607 1614 221 14 16 chr11 3000013 3002238 -118841618 - GSAT_MM Satellite Satellite -9 2219 1 1 607 1529 226 29 23 chr11 3002257 3004752 -118839104 - GSAT_MM Satellite Satellite -139 2508 1 1 607 2413 86 0 12 chr11 3004762 3005103 -118838753 + IAPLTR4 LTR ERVK 1 337 -8 2 607 920 230 86 8 chr11 3005110 3005466 -118838390 + IAPLTR3-int LTR ERVK 1 474 -6347 2 607 1907 255 35 4 chr11 3005599 3006087 -118837769 + IAPLTR3-int LTR ERVK 441 943 -5878 2 607 23530 238 16 14 chr11 3006127 3011514 -118832342 + IAPLTR3-int LTR ERVK 898 5745 -1076 2 607 288 316 11 38 chr11 3011773 3011957 -118831899 + IAPLTR3-int LTR ERVK 5941 6119 -423 2 607 228 200 0 22 chr11 3011990 3012036 -118831820 + B1_Mur1 SINE Alu 100 144 -5 3 607 590 95 0 10 chr11 3012062 3012158 -118831698 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 4 607 365 292 151 6 chr11 3012182 3012354 -118831502 + ORR1A1 LTR MaLR 150 346 0 5 607 286 250 0 15 chr11 3012354 3012411 -118831445 + B1F1 SINE Alu 90 145 -4 6 607 640 39 0 46 chr11 3012431 3012540 -118831316 + (TTTC)n Simple_repeat Simple_repeat 1 104 0 7 607 390 124 23 150 chr11 3012541 3012666 -118831190 - B1_Mus1 SINE Alu -29 120 8 8 607 332 221 151 32 chr11 3012603 3012729 -118831127 + ORR1A1 LTR MaLR 199 339 -7 9 607 264 222 0 18 chr11 3012738 3012793 -118831063 + B1F SINE Alu 92 145 -4 1 607 345 24 0 0 chr11 3012813 3012855 -118831001 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1 607 411 105 6 166 chr11 3012855 3012993 -118830863 - B1_Mus1 SINE Alu 0 120 8 1 607 323 197 53 0 chr11 3012983 3013059 -118830797 + ORR1A1 LTR MaLR 267 346 0 1 607 293 250 0 15 chr11 3013059 3013116 -118830740 + B1F1 SINE Alu 90 145 -4 1 607 1064 34 0 65 chr11 3013136 3013611 -118830245 + (TTTC)n Simple_repeat Simple_repeat 1 444 0 1 607 410 211 46 123 chr11 3013614 3013744 -118830112 - B1_Mus1 SINE Alu -21 127 8 1 607 290 231 12 25 chr11 3013726 3013806 -118830050 + ORR1A1 LTR MaLR 261 339 -7 1 607 267 222 0 18 chr11 3013815 3013870 -118829986 + B1F1 SINE Alu 92 145 -4 1 607 378 120 0 0 chr11 3013888 3013963 -118829893 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 1 607 397 101 19 142 chr11 3013998 3014103 -118829753 - B1_Mus1 SINE Alu -42 107 8 2 607 341 192 26 0 chr11 3014093 3014171 -118829685 + ORR1A2 LTR MaLR 248 327 0 2 607 247 281 0 15 chr11 3014171 3014228 -118829628 + B1F1 SINE Alu 90 145 -4 2 607 744 51 0 83 chr11 3014258 3014450 -118829406 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2 607 235 250 88 150 chr11 3014450 3014468 -118829388 - ID_B1 SINE B4 0 224 156 2 607 375 135 24 142 chr11 3014468 3014592 -118829264 - B1_Mus1 SINE Alu -29 120 8 2 607 387 152 76 0 chr11 3014576 3014655 -118829201 + ORR1A1 LTR MaLR 255 339 -7 2 607 235 250 88 150 chr11 3014592 3014610 -118829246 - ID_B1 SINE B4 0 155 75 2 608 267 232 0 67 chr11 3014664 3014724 -118829132 + B1F SINE Alu 92 147 -2 2 608 300 102 0 0 chr11 3014737 3014786 -118829070 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 2 608 386 184 45 149 chr11 3014787 3014921 -118828935 - B1_Mus1 SINE Alu -21 127 8 2 608 323 178 27 14 chr11 3014910 3014984 -118828872 + ORR1A1 LTR MaLR 265 339 -7 3 608 258 250 0 18 chr11 3014993 3015050 -118828806 + B1F1 SINE Alu 92 147 -2 3 608 278 98 20 0 chr11 3015068 3015119 -118828737 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 3 608 411 58 0 148 chr11 3015164 3015245 -118828611 - B1_Mus1 SINE Alu -72 76 8 3 608 294 233 0 0 chr11 3015235 3015308 -118828548 + ORR1A1 LTR MaLR 267 339 -7 3 608 474 18 0 0 chr11 3015394 3015449 -118828407 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 3 608 397 73 0 150 chr11 3015495 3015575 -118828281 - B1_Mus1 SINE Alu -73 75 8 3 608 343 192 0 0 chr11 3015565 3015638 -118828218 + ORR1A1 LTR MaLR 267 339 -7 3 608 938 83 0 43 chr11 3015727 3015915 -118827941 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 608 333 218 45 173 chr11 3015915 3016048 -118827808 - B1_Mm SINE Alu -22 125 10 3 608 332 203 14 0 chr11 3016040 3016114 -118827742 + ORR1A1 LTR MaLR 265 339 -7 4 608 290 185 74 0 chr11 3016123 3016177 -118827679 + B1F1 SINE Alu 92 149 0 4 608 13957 15 0 0 chr11 3016203 3017778 -118826078 + L1Md_A LINE L1 4012 5586 -297 4 608 8627 31 0 0 chr11 3017779 3018773 -118825083 + L1Md_A LINE L1 5588 6581 -1 4 608 488 92 0 22 chr11 3018789 3018878 -118824978 + (TTTC)n Simple_repeat Simple_repeat 1 87 0 4 608 405 167 45 149 chr11 3018878 3019012 -118824844 - B1_Mus1 SINE Alu -21 127 8 4 608 343 192 0 0 chr11 3019002 3019075 -118824781 + ORR1A1 LTR MaLR 267 339 -7 4 608 234 62 0 0 chr11 3019156 3019188 -118824668 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 4 608 378 176 45 149 chr11 3019188 3019322 -118824534 - B1_Mus1 SINE Alu -21 127 8 4 608 335 194 0 0 chr11 3019318 3019385 -118824471 + ORR1A1 LTR MaLR 273 339 -7 4 608 271 222 0 18 chr11 3019394 3019449 -118824407 + B1F SINE Alu 92 145 -4 4 608 817 72 0 67 chr11 3019469 3019662 -118824194 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 608 210 37 0 0 chr11 3019684 3019711 -118824145 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 608 369 123 26 151 chr11 3019713 3019837 -118824019 - B1_Mus1 SINE Alu -29 120 8 5 608 315 208 0 0 chr11 3019828 3019900 -118823956 + ORR1A1 LTR MaLR 268 339 -7 5 608 298 204 0 18 chr11 3019909 3019964 -118823892 + B1F1 SINE Alu 92 145 -4 5 608 951 63 0 47 chr11 3019984 3020030 -118823826 + (TTTC)n Simple_repeat Simple_repeat 1 44 -184 5 608 951 63 0 47 chr11 3020037 3020224 -118823632 + (TTTC)n Simple_repeat Simple_repeat 45 228 0 5 608 361 177 53 150 chr11 3020224 3020349 -118823507 - B1_Mus1 SINE Alu -28 120 8 5 608 367 149 0 0 chr11 3020345 3020412 -118823444 + ORR1A1 LTR MaLR 273 339 -7 5 608 210 315 0 0 chr11 3020421 3020475 -118823381 + B1F SINE Alu 92 145 -4 5 608 489 76 0 0 chr11 3020495 3020561 -118823295 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 5 608 345 144 18 141 chr11 3020580 3020685 -118823171 - B1_Mus1 SINE Alu -42 107 8 6 608 325 203 14 0 chr11 3020674 3020748 -118823108 + ORR1A1 LTR MaLR 265 339 -7 6 608 210 37 0 0 chr11 3020829 3020856 -118823000 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 608 931 51 5 54 chr11 3020871 3021057 -118822799 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 6 608 390 119 16 146 chr11 3021057 3021183 -118822673 - B1_Mus1 SINE Alu -29 120 8 6 608 367 178 0 0 chr11 3021173 3021246 -118822610 + ORR1A1 LTR MaLR 267 339 -7 6 608 212 278 0 18 chr11 3021255 3021310 -118822546 + B1F SINE Alu 92 145 -4 6 608 921 44 0 0 chr11 3021330 3021444 -118822412 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 6 608 344 163 46 134 chr11 3021447 3021572 -118822284 - B1_Mus1 SINE Alu -19 130 4 6 608 308 164 0 0 chr11 3021572 3021631 -118822225 + ORR1A1 LTR MaLR 281 339 -7 6 608 269 218 0 18 chr11 3021639 3021695 -118822161 + B1F1 SINE Alu 91 145 -4 6 608 486 33 0 0 chr11 3021715 3021775 -118822081 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 7 608 345 103 0 150 chr11 3021820 3021900 -118821956 - B1_Mus1 SINE Alu -73 75 8 7 608 362 181 0 0 chr11 3021891 3021963 -118821893 + ORR1A1 LTR MaLR 268 339 -7 7 608 216 245 0 19 chr11 3021973 3022027 -118821829 + B1_Mur4 SINE Alu 94 146 -4 7 608 554 82 0 12 chr11 3022048 3022134 -118821722 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 7 608 385 112 18 141 chr11 3022156 3022261 -118821595 - B1_Mus1 SINE Alu -42 107 8 7 608 411 188 0 0 chr11 3022251 3022331 -118821525 + ORR1A1 LTR MaLR 267 346 0 7 608 345 109 0 0 chr11 3022412 3022476 -118821380 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 7 608 381 221 47 124 chr11 3022476 3022605 -118821251 - B1_Mus1 SINE Alu -22 126 8 7 608 341 179 0 0 chr11 3022601 3022668 -118821188 + ORR1A1 LTR MaLR 273 339 -7 7 608 419 73 15 0 chr11 3022752 3022820 -118821036 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 8 608 408 198 47 133 chr11 3022823 3022951 -118820905 - B1_Mm SINE Alu -22 125 9 8 608 461 150 0 0 chr11 3022943 3023023 -118820833 + ORR1A1 LTR MaLR 267 346 0 8 608 256 246 0 17 chr11 3023023 3023080 -118820776 + B1F1 SINE Alu 90 145 -4 8 608 690 55 0 0 chr11 3023106 3023197 -118820659 + (TC)n Simple_repeat Simple_repeat 2 92 0 8 608 31 26 0 0 chr11 3024264 3024302 -118819554 + AT_rich Low_complexity Low_complexity 1 38 0 8 608 276 30 0 0 chr11 3024318 3024351 -118819505 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 8 608 215 175 0 100 chr11 3024470 3024540 -118819316 + T-rich Low_complexity Low_complexity 1 63 0 8 608 252 59 0 0 chr11 3024552 3024586 -118819270 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 8 608 413 212 45 127 chr11 3024718 3024855 -118819001 - B4A SINE B4 -67 225 94 8 608 3549 31 51 0 chr11 3024855 3025270 -118818586 + RLTR10C LTR ERVK 1 436 0 9 608 413 212 45 127 chr11 3025270 3025289 -118818567 - B4A SINE B4 -199 93 82 8 608 689 84 244 0 chr11 3025402 3025521 -118818335 - B1_Mus1 SINE Alu 0 148 1 9 608 189 74 0 0 chr11 3025932 3025959 -118817897 + (CAAG)n Simple_repeat Simple_repeat 4 30 0 9 608 182 333 19 0 chr11 3026174 3026228 -118817628 + L2 LINE L2 29 83 -3336 9 608 455 255 20 0 chr11 3033432 3033530 -118810326 - PB1D10 SINE Alu -6 111 12 9 608 341 22 22 0 chr11 3033885 3033931 -118809925 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 608 549 0 0 0 chr11 3035568 3035629 -118808227 + (CCCTG)n Simple_repeat Simple_repeat 4 64 0 9 608 2078 219 72 9 chr11 3037678 3038168 -118805688 + Lx9 LINE L1 6954 7456 -188 9 608 702 0 0 0 chr11 3038174 3038252 -118805604 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 9 608 302 238 48 0 chr11 3038268 3038352 -118805504 - PB1 SINE Alu -25 102 15 9 608 321 248 0 129 chr11 3038423 3038539 -118805317 + MT2B LTR ERVL 157 257 -344 1 608 789 150 15 8 chr11 3038449 3038583 -118805273 + B1_Mur4 SINE Alu 16 150 0 1 608 1150 76 7 0 chr11 3038715 3038860 -118804996 + B1_Mm SINE Alu 2 147 0 1 608 1236 98 27 11 chr11 3038902 3039088 -118804768 + B2_Mm2 SINE B2 2 190 -5 1 608 3372 35 5 12 chr11 3039116 3039515 -118804341 + MTA_Mm LTR MaLR 1 396 0 1 608 336 48 0 0 chr11 3039821 3039863 -118803993 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 608 1055 102 7 26 chr11 3040483 3040634 -118803222 - B1_Mur4 SINE Alu 0 150 3 1 608 805 211 7 27 chr11 3040685 3040831 -118803025 + B1_Mur1 SINE Alu 7 149 0 1 608 534 282 88 28 chr11 3040861 3041043 -118802813 - B4A SINE B4 0 292 100 1 608 1928 150 96 6 chr11 3041075 3041418 -118802438 + RMER4A LTR ERVK 93 466 0 1 608 305 179 96 82 chr11 3041434 3041507 -118802349 - B4A SINE B4 -208 84 11 1 608 681 180 70 20 chr11 3045391 3045537 -118798319 - B1_Mus1 SINE Alu 0 150 2 1 608 1098 144 109 47 chr11 3045580 3045791 -118798065 - URR1B DNA MER1_type 0 225 2 1 608 1208 133 37 0 chr11 3046433 3046621 -118797235 + B2_Mm2 SINE B2 1 195 0 1 608 527 262 38 15 chr11 3046742 3046874 -118796982 + B1_Mur1 SINE Alu 1 135 -14 1 608 357 333 18 147 chr11 3046874 3046901 -118796955 + B4 SINE B4 86 213 -79 1 608 297 128 0 0 chr11 3046901 3046948 -118796908 + (CAGG)n Simple_repeat Simple_repeat 1 47 0 1 608 357 333 18 147 chr11 3046948 3047005 -118796851 + B4 SINE B4 214 274 -18 1 608 502 261 13 11 chr11 3046964 3047104 -118796752 + B3 SINE B2 38 174 -24 1 608 261 252 256 16 chr11 3047075 3047196 -118796660 + B3 SINE B2 65 214 -2 1 608 192 40 0 0 chr11 3047209 3047234 -118796622 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 608 1153 89 19 12 chr11 3047234 3047394 -118796462 - B2_Mm2 SINE B2 -34 161 1 1 608 25 0 0 0 chr11 3047395 3047420 -118796436 + AT_rich Low_complexity Low_complexity 1 25 0 1 608 518 194 202 0 chr11 3047429 3047558 -118796298 + RMER4B LTR ERVK 17 171 -414 1 608 539 242 41 218 chr11 3047546 3047863 -118795993 + RMER4B LTR ERVK 342 611 0 1 608 717 242 31 26 chr11 3047883 3048074 -118795782 + B3A SINE B2 1 192 -6 1 608 546 143 0 0 chr11 3048162 3048246 -118795610 - B1_Mur4 SINE Alu -1 149 66 1 608 455 236 46 18 chr11 3048212 3048325 -118795531 - B1F SINE Alu -22 127 12 1 608 946 133 28 0 chr11 3048350 3048493 -118795363 - B1_Mus2 SINE Alu 0 147 1 1 608 252 86 0 0 chr11 3048783 3048818 -118795038 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 608 237 228 196 56 chr11 3048910 3049017 -118794839 + RLTR6_Mm LTR ERV1 1 122 -532 1 608 2375 102 233 45 chr11 3049019 3049483 -118794373 + RLTR6_Mm LTR ERV1 37 587 -67 1 608 185 65 32 0 chr11 3050540 3050571 -118793285 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 608 517 258 16 39 chr11 3051024 3051153 -118792703 - ID_B1 SINE B4 -1 223 98 1 608 279 0 0 0 chr11 3051176 3051207 -118792649 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 608 653 259 8 0 chr11 3051208 3051339 -118792517 - ID_B1 SINE B4 -11 213 82 1 608 606 248 51 0 chr11 3051341 3051478 -118792378 - B1F SINE Alu -5 144 1 1 608 292 254 50 164 chr11 3051582 3052181 -118791675 + L1M3e LINE L1 400 930 -6100 1 608 686 126 155 16 chr11 3052218 3052347 -118791509 + B1_Mus1 SINE Alu 1 147 -1 1 608 427 287 204 13 chr11 3052836 3052988 -118790868 + B3A SINE B2 1 181 -17 1 608 323 44 22 0 chr11 3053750 3053795 -118790061 + (TTGG)n Simple_repeat Simple_repeat 1 46 0 1 608 813 220 93 16 chr11 3054069 3054263 -118789593 - B3 SINE B2 -5 211 3 1 608 242 254 90 0 chr11 3054305 3054372 -118789484 + ID4 SINE ID 1 73 -10 1 608 1266 35 0 0 chr11 3054400 3054545 -118789311 + B1_Mm SINE Alu 3 147 0 1 608 246 286 48 0 chr11 3054875 3054938 -118788918 - ID4 SINE ID -15 68 3 1 608 293 239 12 57 chr11 3055207 3055339 -118788517 - B1_Mur2 SINE Alu -23 126 3 1 608 484 162 19 86 chr11 3055701 3055910 -118787946 - RMER17C LTR ERVK -137 273 79 1 608 251 277 120 65 chr11 3056641 3056749 -118787107 + ID_B1 SINE B4 98 211 -13 1 608 243 200 22 0 chr11 3057125 3057170 -118786686 + PB1D9 SINE Alu 2 47 -73 1 608 396 311 0 0 chr11 3057243 3057362 -118786494 + MTE2a LTR MaLR 1 119 -260 1 608 598 210 76 0 chr11 3058444 3058563 -118785293 - RSINE1 SINE B4 -4 161 34 1 608 792 170 21 0 chr11 3058744 3058885 -118784971 - B1_Mur1 SINE Alu 0 149 6 1 608 676 167 314 0 chr11 3058917 3059073 -118784783 - B3 SINE B2 -10 206 2 1 608 217 122 0 75 chr11 3059240 3059293 -118784563 + (CTGGGG)n Simple_repeat Simple_repeat 3 51 0 1 608 1537 202 133 5 chr11 3059476 3059844 -118784012 + MTD LTR MaLR 1 415 -4 1 608 241 261 30 30 chr11 3060286 3060353 -118783503 + ID4_ SINE ID 12 78 -5 1 608 1117 259 115 27 chr11 3060443 3060816 -118783040 + MTD LTR MaLR 2 407 -12 1 608 1048 122 7 0 chr11 3060856 3061004 -118782852 + B1_Mur4 SINE Alu 2 150 0 1 608 301 196 0 0 chr11 3061772 3061823 -118782033 - B1_Mur4 SINE Alu -98 52 2 1 608 1287 90 39 0 chr11 3061909 3062087 -118781769 - B2_Mm2 SINE B2 -8 187 3 1 608 624 230 42 28 chr11 3062650 3062793 -118781063 + B1_Mur1 SINE Alu 4 148 -1 1 608 1189 54 0 7 chr11 3063453 3063602 -118780254 - B1_Mus1 SINE Alu 0 148 1 1 608 22 35 0 0 chr11 3063652 3063681 -118780175 + AT_rich Low_complexity Low_complexity 1 29 0 1 608 1080 122 35 6 chr11 3064136 3064309 -118779547 + B2_Mm2 SINE B2 1 178 -17 1 608 503 29 29 0 chr11 3064309 3064377 -118779479 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 1 608 339 250 0 0 chr11 3064756 3064832 -118779024 + ID_B1 SINE B4 149 224 0 1 608 1238 41 0 0 chr11 3065002 3065149 -118778707 + B1_Mus1 SINE Alu 1 147 -1 1 608 21 57 0 0 chr11 3065192 3065227 -118778629 + AT_rich Low_complexity Low_complexity 1 35 0 1 608 478 238 62 47 chr11 3065857 3065985 -118777871 + RSINE1 SINE B4 3 132 -33 1 608 921 180 0 20 chr11 3066041 3066194 -118777662 + B1_Mur4 SINE Alu 1 150 0 1 608 378 0 0 0 chr11 3066226 3066268 -118777588 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 1 608 335 228 51 0 chr11 3066336 3066415 -118777441 - ID4_ SINE ID 0 83 1 1 608 1069 197 0 5 chr11 3066674 3066883 -118776973 + B3 SINE B2 9 216 0 1 608 323 206 0 0 chr11 3067249 3067312 -118776544 + B4A SINE B4 3 65 -227 1 608 2794 146 66 27 chr11 3067510 3068443 -118775413 + RLTR21 LTR ERVK 1 1201 -203 1 608 246 62 0 0 chr11 3068443 3068475 -118775381 + (TATG)n Simple_repeat Simple_repeat 3 34 0 1 608 635 281 58 102 chr11 3068475 3068534 -118775322 + RLTR21 LTR ERVK 1202 1253 -151 1 608 369 0 0 0 chr11 3068534 3068575 -118775281 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 608 635 281 58 102 chr11 3068575 3068735 -118775121 + RLTR21 LTR ERVK 1254 1404 0 1 608 716 114 21 84 chr11 3069164 3069307 -118774549 + B1_Mus1 SINE Alu 15 148 0 1 608 400 196 61 46 chr11 3069428 3069550 -118774306 + B1_Mur3 SINE Alu 3 125 -24 1 608 1680 200 37 0 chr11 3069599 3069924 -118773932 - MTC LTR MaLR -2 419 83 1 608 183 80 0 0 chr11 3069924 3069949 -118773907 + (T)n Simple_repeat Simple_repeat 1 25 0 1 608 633 51 61 0 chr11 3069995 3070093 -118773763 - L1Md_F3 LINE L1 -1 6583 6480 1 608 477 160 10 41 chr11 3070093 3070191 -118773665 - MTC LTR MaLR -326 95 1 1 608 1129 75 0 20 chr11 3070226 3070376 -118773480 - B1_Mus1 SINE Alu 0 148 2 1 608 744 224 25 40 chr11 3070749 3070949 -118772907 + B3A SINE B2 2 198 0 1 608 575 261 26 19 chr11 3070978 3071134 -118772722 + RSINE1 SINE B4 3 159 -6 1 608 676 194 26 46 chr11 3071381 3071532 -118772324 - B1_Mur1 SINE Alu 0 149 2 1 608 888 189 65 25 chr11 3071532 3071731 -118772125 - B4A SINE B4 -67 225 19 1 608 873 132 14 7 chr11 3071897 3072042 -118771814 + B1_Mur4 SINE Alu 5 150 0 1 608 1340 61 44 22 chr11 3072090 3072273 -118771583 + B2_Mm2 SINE B2 1 187 -8 1 608 249 200 16 16 chr11 3072276 3072337 -118771519 + L1M5 LINE L1 2760 2820 -3326 1 608 934 252 10 0 chr11 3072373 3072571 -118771285 + B3 SINE B2 10 209 -7 1 608 1157 81 0 0 chr11 3072577 3072725 -118771131 + B1_Mus1 SINE Alu 1 148 0 1 608 30 0 0 0 chr11 3072725 3072755 -118771101 + AT_rich Low_complexity Low_complexity 1 30 0 1 608 502 229 0 0 chr11 3072822 3072927 -118770929 - B1_Mus1 SINE Alu -20 128 24 1 608 460 308 50 19 chr11 3072940 3073099 -118770757 + B3A SINE B2 30 193 -5 1 608 332 276 0 0 chr11 3073122 3073198 -118770658 + B1_Mus2 SINE Alu 6 81 -66 1 608 35 24 0 0 chr11 3073198 3073240 -118770616 + AT_rich Low_complexity Low_complexity 1 42 0 1 608 269 196 0 35 chr11 3073284 3073342 -118770514 + B1_Mur2 SINE Alu 94 149 0 1 608 266 239 121 26 chr11 3073486 3073602 -118770254 - MTD LTR MaLR 0 419 293 1 608 280 169 17 0 chr11 3073580 3073639 -118770217 + MTD LTR MaLR 215 274 -145 1 608 190 176 19 19 chr11 3073788 3073801 -118770055 + polypurine Low_complexity Low_complexity 3 16 0 1 608 1174 54 0 0 chr11 3073801 3073948 -118769908 + B1_Mus2 SINE Alu 1 147 0 1 608 190 176 19 19 chr11 3073948 3073986 -118769870 + GA-rich Low_complexity Low_complexity 17 54 0 2 608 245 269 91 18 chr11 3074192 3074302 -118769554 + L1M5 LINE L1 3454 3571 -2575 1 608 329 202 122 11 chr11 3074302 3074392 -118769464 + PB1 SINE Alu 26 125 -2 2 608 431 316 22 0 chr11 3074407 3074543 -118769313 + B4A SINE B4 6 144 -148 2 608 780 200 73 87 chr11 3074578 3074649 -118769207 + B3 SINE B2 1 71 -145 2 608 4660 58 23 0 chr11 3074649 3075223 -118768633 + LTRIS_Mus LTR ERV1 1 587 0 2 608 780 200 73 87 chr11 3075223 3075370 -118768486 + B3 SINE B2 72 216 0 2 608 345 152 0 0 chr11 3075375 3075434 -118768422 + RLTR31A_Mm LTR ERVK 157 215 -369 2 608 209 30 61 0 chr11 3075440 3075473 -118768383 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 608 1142 55 7 7 chr11 3075473 3075620 -118768236 - B1_Mus1 SINE Alu 0 148 2 2 608 1117 89 137 0 chr11 3075621 3075789 -118768067 - B2_Mm1t SINE B2 -2 191 1 2 608 983 68 0 7 chr11 3075790 3075937 -118767919 + RLTR31A_Mm LTR ERVK 201 346 -238 2 608 284 190 101 0 chr11 3076055 3076134 -118767722 + L1M5 LINE L1 4233 4319 -1827 1 608 321 244 43 32 chr11 3076385 3076478 -118767378 - PB1 SINE Alu -8 119 26 2 608 494 233 30 30 chr11 3076592 3076725 -118767131 + B3 SINE B2 2 134 -82 2 608 228 67 0 0 chr11 3076758 3076788 -118767068 + (T)n Simple_repeat Simple_repeat 1 30 0 2 608 1250 40 0 0 chr11 3076788 3076936 -118766920 - B1_Mus1 SINE Alu 0 148 1 2 608 368 239 32 11 chr11 3076938 3077031 -118766825 + B3 SINE B2 122 216 0 2 608 1017 180 71 20 chr11 3077757 3077955 -118765901 + B3 SINE B2 1 208 -8 2 608 1469 63 0 5 chr11 3078376 3078566 -118765290 + B2_Mm2 SINE B2 4 192 -3 2 608 699 130 9 0 chr11 3078587 3078695 -118765161 + B1_Mur4 SINE Alu 10 118 -32 2 608 279 320 69 57 chr11 3078704 3078863 -118764993 - RSINE1 SINE B4 -2 163 3 2 608 462 193 9 18 chr11 3080095 3080206 -118763650 - B1_Mur4 SINE Alu 0 150 41 2 608 798 150 0 0 chr11 3080212 3080379 -118763477 + (TCCC)n Simple_repeat Simple_repeat 4 170 0 2 608 331 195 13 42 chr11 3080414 3080680 -118763176 + CT-rich Low_complexity Low_complexity 1 258 0 2 608 217 232 0 35 chr11 3080691 3080749 -118763107 - B1_Mur4 SINE Alu -90 60 5 2 608 383 246 9 7 chr11 3080795 3080904 -118762952 - PB1D10 SINE Alu -25 102 3 2 608 1258 21 0 0 chr11 3080955 3081098 -118762758 - B1_Mus1 SINE Alu -5 143 1 2 608 189 0 0 0 chr11 3081648 3081669 -118762187 + (TTCC)n Simple_repeat Simple_repeat 2 22 0 2 608 306 218 118 10 chr11 3081677 3081779 -118762077 - MTD LTR MaLR 0 419 307 2 608 271 214 155 0 chr11 3081797 3081881 -118761975 - RMER10A LTR ERVL -28 414 318 2 608 1235 252 13 16 chr11 3082343 3082646 -118761210 - MTD LTR MaLR -112 307 6 2 608 1066 234 9 0 chr11 3082646 3082860 -118760996 + B3 SINE B2 1 216 0 2 608 1205 54 7 0 chr11 3083046 3083193 -118760663 - B1_Mus1 SINE Alu 0 148 1 2 608 439 270 26 0 chr11 3083295 3083410 -118760446 - B3 SINE B2 -1 215 98 2 608 257 151 0 185 chr11 3083411 3083476 -118760380 - B1_Mus2 SINE Alu -77 70 18 2 608 29 0 0 45 chr11 3083539 3083555 -118760301 + AT_rich Low_complexity Low_complexity 1 15 0 2 608 820 70 147 8 chr11 3083555 3083684 -118760172 + B1_Mus2 SINE Alu 1 147 0 2 608 29 0 0 45 chr11 3083684 3083711 -118760145 + AT_rich Low_complexity Low_complexity 1 27 0 2 608 1550 41 0 5 chr11 3084101 3084295 -118759561 - L1_Mus1 LINE L1 0 6567 6375 2 608 214 228 17 17 chr11 3084315 3084373 -118759483 - L2 LINE L2 -834 2585 2528 2 608 711 190 29 0 chr11 3084450 3084587 -118759269 + B1_Mus2 SINE Alu 1 141 -6 2 608 421 278 99 33 chr11 3085373 3085555 -118758301 + B3A SINE B2 1 194 -4 2 608 367 250 220 17 chr11 3085558 3085676 -118758180 + B1_Mur1 SINE Alu 2 143 -6 2 608 952 81 200 7 chr11 3085691 3085841 -118758015 + B2_Mm2 SINE B2 3 181 -14 2 608 884 171 14 0 chr11 3085841 3085981 -118757875 - B1_Mur4 SINE Alu -6 144 3 2 608 1203 27 0 26 chr11 3086275 3086426 -118757430 + B1_Mus2 SINE Alu 1 147 0 2 608 386 181 267 33 chr11 3086519 3086639 -118757217 + B1_Mus1 SINE Alu 1 148 0 2 608 359 248 52 52 chr11 3086680 3086795 -118757061 - PB1D9 SINE Alu -5 115 1 2 608 780 201 0 28 chr11 3087645 3087788 -118756068 - B1_Mus1 SINE Alu -8 140 2 2 608 672 195 43 12 chr11 3087869 3088030 -118755826 + B3 SINE B2 47 212 -4 2 608 909 178 14 0 chr11 3088034 3088180 -118755676 + B1_Mus1 SINE Alu 1 148 0 2 608 378 287 65 8 chr11 3088228 3088351 -118755505 + B3A SINE B2 20 149 -49 2 608 236 289 83 12 chr11 3088475 3088559 -118755297 - PB1D10 SINE Alu 0 117 28 2 608 189 0 0 0 chr11 3088650 3088671 -118755185 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2 608 793 168 21 0 chr11 3088671 3088814 -118755042 - B1_Mur4 SINE Alu -2 148 3 2 608 1185 55 0 0 chr11 3089181 3089326 -118754530 - B1_Mus2 SINE Alu -1 146 2 2 608 486 217 8 8 chr11 3089375 3089494 -118754362 - MTC LTR MaLR 0 421 257 2 608 4683 97 40 11 chr11 3089646 3090305 -118753551 + RLTR33 LTR ERVK 1 678 0 2 608 1562 168 77 6 chr11 3090305 3090617 -118753239 - MTC LTR MaLR -87 334 1 2 608 1194 61 0 0 chr11 3090677 3090824 -118753032 + B1_Mm SINE Alu 1 147 0 2 608 240 100 0 0 chr11 3090826 3090866 -118752990 + (A)n Simple_repeat Simple_repeat 1 40 0 2 608 1058 75 7 39 chr11 3090904 3091057 -118752799 + B1_Mus1 SINE Alu 1 148 0 2 608 331 134 25 0 chr11 3091085 3091148 -118752708 + B1F2 SINE Alu 1 70 -47 2 608 342 280 186 0 chr11 3091286 3091357 -118752499 + ID_B1 SINE B4 3 95 -129 2 608 212 193 246 0 chr11 3091357 3091414 -118752442 + B1F2 SINE Alu 1 71 -78 2 608 1243 102 50 11 chr11 3091443 3091622 -118752234 + B2_Mm2 SINE B2 1 186 -9 2 608 291 259 184 18 chr11 3091747 3091861 -118751995 - RCHARR1 DNA MER1_type -839 135 3 2 608 459 279 0 24 chr11 3091867 3091992 -118751864 + B3A SINE B2 2 123 -75 2 608 757 197 9 113 chr11 3092143 3092372 -118751484 + B3 SINE B2 1 205 -11 2 608 380 274 0 17 chr11 3092514 3092629 -118751227 - B3A SINE B2 -85 113 1 2 608 31 0 0 0 chr11 3092647 3092678 -118751178 + AT_rich Low_complexity Low_complexity 1 31 0 2 608 282 235 12 12 chr11 3094040 3094126 -118749730 + B1_Mus1 SINE Alu 40 125 -23 2 608 300 365 26 9 chr11 3094179 3094295 -118749561 + RSINE1 SINE B4 38 155 -10 2 608 989 70 8 0 chr11 3094325 3094454 -118749402 + B1_Mus1 SINE Alu 2 131 -17 2 608 489 34 0 0 chr11 3094456 3094515 -118749341 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2 608 297 301 105 9 chr11 3094519 3094633 -118749223 + PB1 SINE Alu 1 125 -2 2 608 564 154 0 46 chr11 3094669 3094778 -118749078 + B1_Mur4 SINE Alu 46 149 -1 2 608 451 319 28 0 chr11 3094814 3094955 -118748901 + B1_Mur1 SINE Alu 4 148 -1 2 608 801 110 24 0 chr11 3094956 3095083 -118748773 + B2_Mm1t SINE B2 50 179 -14 2 608 333 121 353 29 chr11 3095115 3095217 -118748639 + B2_Mm2 SINE B2 47 181 -14 2 608 1146 70 0 0 chr11 3095226 3095369 -118748487 - B1_Mus2 SINE Alu -3 144 2 2 608 355 236 269 60 chr11 3095592 3095741 -118748115 - B3A SINE B2 -16 182 3 2 608 1293 191 123 7 chr11 3095992 3096302 -118747554 - ORR1D1 LTR MaLR -28 346 1 2 608 298 192 0 151 chr11 3096854 3096940 -118746916 + MT2B LTR ERVL 168 240 -361 2 608 587 164 143 25 chr11 3096866 3096985 -118746871 + B1_Mur2 SINE Alu 12 144 -5 2 608 321 135 0 0 chr11 3096985 3097037 -118746819 + (GGA)n Simple_repeat Simple_repeat 1 52 0 2 608 1039 72 50 0 chr11 3097130 3097269 -118746587 + B1_Mus2 SINE Alu 2 147 0 2 608 243 125 0 0 chr11 3097269 3097309 -118746547 + (A)n Simple_repeat Simple_repeat 1 40 0 2 608 1464 73 5 20 chr11 3097314 3097510 -118746346 + B2_Mm1t SINE B2 1 193 0 2 608 1059 109 121 0 chr11 3097529 3097703 -118746153 + B2_Mm2 SINE B2 1 195 0 2 608 1355 99 0 25 chr11 3097825 3098021 -118745835 - B2_Mm2 SINE B2 -3 192 2 2 608 253 243 28 28 chr11 3098211 3098283 -118745573 + ID4_ SINE ID 2 73 -10 2 608 2491 142 33 33 chr11 3098395 3098554 -118745302 - RMER6B LTR ERVK -1 460 294 2 608 272 48 24 0 chr11 3098554 3098596 -118745260 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 608 2491 142 33 33 chr11 3098596 3098650 -118745206 - RMER6B LTR ERVK -168 293 241 2 608 591 53 0 0 chr11 3098650 3098725 -118745131 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 608 2491 142 33 33 chr11 3098725 3098970 -118744886 - RMER6B LTR ERVK -221 240 2 2 608 979 161 18 12 chr11 3098971 3099141 -118744715 + B3 SINE B2 6 176 -40 2 608 416 203 43 128 chr11 3099130 3099157 -118744699 + B4A SINE B4 72 93 -199 2 608 561 214 151 26 chr11 3099157 3099349 -118744507 + B3 SINE B2 1 216 0 2 608 416 203 43 128 chr11 3099349 3099485 -118744371 + B4A SINE B4 94 221 -71 2 608 989 93 0 0 chr11 3099351 3099491 -118744365 + B1_Mus1 SINE Alu 9 148 0 2 608 22 0 0 0 chr11 3099494 3099516 -118744340 + AT_rich Low_complexity Low_complexity 1 22 0 2 608 252 260 81 14 chr11 3099729 3099803 -118744053 - ID4_ SINE ID 0 83 5 2 608 23 33 0 0 chr11 3099807 3099837 -118744019 + AT_rich Low_complexity Low_complexity 1 30 0 2 608 674 215 92 20 chr11 3099839 3100034 -118743822 - B3 SINE B2 -6 210 2 2 608 437 211 37 28 chr11 3100038 3100145 -118743711 - B1_Mur1 SINE Alu 0 149 42 2 608 202 132 0 73 chr11 3100522 3100537 -118743319 + A-rich Low_complexity Low_complexity 4 16 0 2 608 1271 27 0 0 chr11 3100537 3100683 -118743173 + B1_Mm SINE Alu 2 147 0 2 608 202 132 0 73 chr11 3100683 3100708 -118743148 + A-rich Low_complexity Low_complexity 17 41 0 3 608 892 128 0 0 chr11 3100709 3100840 -118743016 + B2_Mm2 SINE B2 2 132 -63 3 608 256 77 0 0 chr11 3100840 3100879 -118742977 + B2_Mm2 SINE B2 2 40 -155 3 608 1216 62 0 0 chr11 3100882 3101028 -118742828 + B1_Mus2 SINE Alu 2 147 0 3 608 327 104 0 0 chr11 3101028 3101076 -118742780 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 3 608 912 121 57 0 chr11 3101076 3101233 -118742623 + B2_Mm2 SINE B2 27 192 -3 3 608 33 56 0 0 chr11 3102735 3102789 -118741067 + GC_rich Low_complexity Low_complexity 1 54 0 3 608 225 215 25 12 chr11 3102850 3102930 -118740926 + (CGGG)n Simple_repeat Simple_repeat 1 81 0 3 608 538 202 0 9 chr11 3104832 3104942 -118738914 - B1_Mur4 SINE Alu -16 134 26 3 608 213 170 106 0 chr11 3105143 3105190 -118738666 - PB1D10 SINE Alu -1 116 65 3 608 330 223 53 152 chr11 3105148 3105280 -118738576 - ID_B1 SINE B4 -6 218 100 3 608 488 134 12 0 chr11 3105351 3105433 -118738423 + B1_Mur2 SINE Alu 54 136 -13 3 608 283 23 45 0 chr11 3105674 3105718 -118738138 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 3 608 1230 41 0 0 chr11 3105718 3105865 -118737991 - B1_Mus2 SINE Alu 0 147 1 3 608 488 157 193 9 chr11 3106370 3106479 -118737377 - B1_Mus1 SINE Alu -5 143 15 3 608 206 289 77 69 chr11 3106482 3106612 -118737244 + MIRb SINE MIR 106 236 -32 3 608 297 309 39 8 chr11 3107262 3107389 -118736467 - B4A SINE B4 -58 234 104 3 608 1251 97 34 6 chr11 3107823 3107999 -118735857 + B2_Mm2 SINE B2 1 181 -14 3 608 1083 44 73 0 chr11 3108011 3108148 -118735708 - B1_Mm SINE Alu 0 147 1 3 608 1127 85 95 11 chr11 3108208 3108387 -118735469 - B2_Mm2 SINE B2 0 195 2 3 608 651 217 0 8 chr11 3108388 3108518 -118735338 + B1_Mur1 SINE Alu 16 144 -5 3 608 270 0 0 0 chr11 3108787 3108817 -118735039 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 608 1198 75 116 0 chr11 3109153 3109326 -118734530 - B2_Mm1t SINE B2 0 193 1 3 608 425 209 10 52 chr11 3109337 3109433 -118734423 + PB1D9 SINE Alu 24 115 -5 3 608 316 297 10 10 chr11 3109551 3109653 -118734203 + L1MB7 LINE L1 5905 6006 -178 3 608 493 163 174 0 chr11 3109829 3109927 -118733929 - B1_Mur4 SINE Alu -2 148 34 3 608 1292 89 17 6 chr11 3109995 3110175 -118733681 - B2_Mm2 SINE B2 -13 182 1 3 608 213 234 302 21 chr11 3110312 3110408 -118733448 - RSINE1 SINE B4 -35 130 8 3 608 21 0 0 0 chr11 3110481 3110502 -118733354 + AT_rich Low_complexity Low_complexity 1 21 0 3 608 680 209 0 8 chr11 3110543 3110673 -118733183 - B3 SINE B2 -87 129 1 3 608 273 57 0 0 chr11 3110781 3110816 -118733040 + (TGG)n Simple_repeat Simple_repeat 3 37 0 3 608 254 301 85 11 chr11 3110816 3110910 -118732946 - PB1D10 SINE Alu -7 110 10 3 608 196 72 0 67 chr11 3111014 3111059 -118732797 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 608 292 257 29 0 chr11 3111246 3111316 -118732540 - ID4 SINE ID -10 73 2 3 608 617 213 33 0 chr11 3111373 3111495 -118732361 + B1_Mur4 SINE Alu 5 130 -20 3 608 788 178 7 14 chr11 3111534 3111682 -118732174 + B1_Mur2 SINE Alu 3 149 0 3 608 300 244 90 34 chr11 3111823 3111912 -118731944 - PB1D10 SINE Alu -8 109 16 3 608 271 194 0 162 chr11 3111868 3111942 -118731914 - ID_B1 SINE B4 -84 140 79 3 608 1110 75 7 0 chr11 3112021 3112167 -118731689 + B1_Mus2 SINE Alu 1 147 0 3 608 372 350 67 19 chr11 3112466 3112676 -118731180 + L1MC4 LINE L1 6661 6880 -1162 3 608 289 266 117 0 chr11 3112694 3112788 -118731068 - PB1D10 SINE Alu -1 116 12 3 608 374 183 61 0 chr11 3112828 3112910 -118730946 + L1MC4 LINE L1 6939 7025 -1017 3 608 317 236 146 0 chr11 3113043 3113132 -118730724 + PB1D10 SINE Alu 7 108 -9 3 608 545 266 55 37 chr11 3113368 3113532 -118730324 + B3A SINE B2 1 167 -31 3 608 1364 81 43 0 chr11 3113966 3114152 -118729704 - B2_Mm2 SINE B2 0 195 2 3 608 599 197 118 22 chr11 3114225 3114360 -118729496 - B1_Mur3 SINE Alu 0 149 2 3 608 770 211 0 26 chr11 3115028 3115179 -118728677 + B1_Mur1 SINE Alu 1 147 -2 3 608 243 0 0 0 chr11 3115248 3115275 -118728581 + (A)n Simple_repeat Simple_repeat 1 27 0 3 608 1227 218 80 13 chr11 3116039 3116341 -118727515 + MTE2a LTR MaLR 58 379 0 3 608 1599 127 30 89 chr11 3116383 3116631 -118727225 - ORR1A3 LTR MaLR -8 318 78 3 608 1110 95 0 0 chr11 3116631 3116779 -118727077 + B1_Mus1 SINE Alu 1 148 0 3 608 1599 127 30 89 chr11 3116779 3116868 -118726988 - ORR1A3 LTR MaLR -249 77 1 3 608 336 189 95 0 chr11 3116949 3117023 -118726833 + ID_B1 SINE B4 133 213 -11 3 608 358 174 14 14 chr11 3117048 3117118 -118726738 + PB1D9 SINE Alu 5 74 -46 3 608 22 0 0 0 chr11 3117166 3117188 -118726668 + AT_rich Low_complexity Low_complexity 1 22 0 3 608 390 169 0 0 chr11 3117249 3117311 -118726545 + T-rich Low_complexity Low_complexity 16 77 0 3 608 1191 47 14 0 chr11 3117311 3117459 -118726397 - B1_Mur4 SINE Alu 0 150 1 3 608 390 169 0 0 chr11 3117459 3117473 -118726383 + T-rich Low_complexity Low_complexity 2 15 0 3 608 261 211 0 0 chr11 3117491 3117548 -118726308 + (CATA)n Simple_repeat Simple_repeat 3 59 0 3 608 1664 183 103 14 chr11 3117551 3117900 -118725956 - Lx5 LINE L1 -38 7012 6633 3 608 211 271 100 0 chr11 3118167 3118237 -118725619 - PB1D7 SINE Alu -7 113 37 3 608 426 269 169 13 chr11 3118248 3118485 -118725371 - L1ME1 LINE L1 -324 5855 5582 3 608 335 67 250 0 chr11 3118488 3118548 -118725308 + B2_Mm2 SINE B2 2 76 -119 3 608 371 244 83 8 chr11 3118561 3118693 -118725163 - L1ME1 LINE L1 -605 5574 5433 3 608 310 257 113 9 chr11 3118741 3118847 -118725009 - PB1D10 SINE Alu 0 117 1 3 608 832 203 0 0 chr11 3118877 3119020 -118724836 + B1_Mus1 SINE Alu 1 143 -5 3 608 603 201 212 6 chr11 3119031 3119201 -118724655 - B3 SINE B2 -9 207 3 3 608 749 201 206 6 chr11 3119263 3119438 -118724418 - B3 SINE B2 -6 210 1 3 608 235 164 164 0 chr11 3119725 3119780 -118724076 - B1F SINE Alu -67 82 19 3 608 28 48 0 0 chr11 3119972 3120014 -118723842 + AT_rich Low_complexity Low_complexity 1 42 0 3 608 377 274 17 42 chr11 3120022 3120140 -118723716 + RSINE1 SINE B4 18 132 -33 3 608 954 96 122 29 chr11 3120571 3120743 -118723113 - B2_Mm2 SINE B2 -7 188 1 3 608 1099 147 5 20 chr11 3121504 3121699 -118722157 + B2_Mm2 SINE B2 2 193 -2 3 608 747 188 56 0 chr11 3121718 3121880 -118721976 + B2_Mm2 SINE B2 1 202 -14 3 608 423 0 0 0 chr11 3121880 3121927 -118721929 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 608 879 188 222 0 chr11 3121954 3122130 -118721726 + B3 SINE B2 2 216 0 3 608 746 200 0 33 chr11 3122452 3122602 -118721254 - B1_Mus1 SINE Alu -1 147 3 3 608 406 262 59 138 chr11 3122768 3123007 -118720849 - ID_B1 SINE B4 -3 221 2 3 608 294 289 13 0 chr11 3123039 3123115 -118720741 - ID2 SINE ID -5 78 2 3 608 1064 130 5 5 chr11 3123167 3123352 -118720504 - B2_Mm2 SINE B2 0 195 11 3 608 314 316 25 42 chr11 3123371 3123490 -118720366 - PB1D10 SINE Alu 0 117 1 3 608 528 258 23 8 chr11 3123490 3123533 -118720323 - ID SINE ID -140 84 40 3 608 335 261 22 11 chr11 3123627 3123716 -118720140 - B3A SINE B2 -96 102 13 3 608 300 213 16 129 chr11 3124194 3124318 -118719538 + B3A SINE B2 73 182 -16 3 608 22 35 0 0 chr11 3124330 3124359 -118719497 + AT_rich Low_complexity Low_complexity 1 29 0 3 608 389 300 114 41 chr11 3124845 3125116 -118718740 + B4A SINE B4 1 291 -1 3 608 344 296 144 0 chr11 3125224 3125323 -118718533 + B1F1 SINE Alu 3 104 -45 3 608 198 0 0 0 chr11 3125323 3125345 -118718511 + (CCTG)n Simple_repeat Simple_repeat 4 25 0 3 608 344 296 144 0 chr11 3125345 3125370 -118718486 + B1F1 SINE Alu 105 143 -6 3 608 324 146 0 18 chr11 3125454 3125510 -118718346 - B1F1 SINE Alu 0 149 95 3 608 811 178 0 0 chr11 3125767 3125902 -118717954 + B1_Mur4 SINE Alu 10 144 -6 3 608 183 80 0 0 chr11 3126011 3126036 -118717820 + (T)n Simple_repeat Simple_repeat 1 25 0 3 608 337 221 0 116 chr11 3126036 3126093 -118717763 - RMER17C LTR ERVK -135 275 220 3 608 1248 48 0 0 chr11 3126093 3126240 -118717616 + B1_Mus2 SINE Alu 1 147 0 3 608 337 221 0 116 chr11 3126240 3126397 -118717459 - RMER17C LTR ERVK -191 219 86 3 608 754 242 33 11 chr11 3126455 3126639 -118717217 + B3 SINE B2 2 189 -27 3 608 917 144 0 7 chr11 3126683 3126830 -118717026 + B1_Mus1 SINE Alu 3 148 0 3 608 329 211 111 26 chr11 3127047 3127164 -118716692 - RSINE1 SINE B4 -37 128 2 3 608 1211 54 0 0 chr11 3127965 3128112 -118715744 + B1_Mm SINE Alu 1 147 0 3 608 3237 49 0 17 chr11 3128196 3128611 -118715245 - L1Md_F2 LINE L1 0 6582 6175 3 608 502 196 39 0 chr11 3128647 3128749 -118715107 - B1_Mur1 SINE Alu -32 117 12 3 608 278 333 97 0 chr11 3128649 3128763 -118715093 - B4 SINE B4 -88 204 80 3 608 1134 89 0 0 chr11 3128987 3129133 -118714723 - B1_Mm SINE Alu 0 147 2 3 608 306 172 0 0 chr11 3129168 3129226 -118714630 - B1_Mur4 SINE Alu -6 144 87 3 608 874 145 38 156 chr11 3129322 3129534 -118714322 - B2_Mm2 SINE B2 -4 191 5 3 608 312 193 281 0 chr11 3129570 3129684 -118714172 - B1_Mm SINE Alu 0 147 2 3 608 722 208 14 20 chr11 3130652 3130799 -118713057 - B1_Mus1 SINE Alu -1 147 2 4 608 180 0 0 0 chr11 3130829 3130849 -118713007 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 608 810 241 20 5 chr11 3130850 3131046 -118712810 - B3 SINE B2 -17 199 1 4 608 674 115 8 50 chr11 3131320 3131439 -118712417 - B1_Mur4 SINE Alu -1 149 36 4 608 496 219 77 15 chr11 3132593 3132723 -118711133 - B1_Mur2 SINE Alu 0 149 12 4 608 292 255 34 102 chr11 3132624 3132742 -118711114 - MT2B LTR ERVL -336 265 156 4 608 953 195 38 19 chr11 3132987 3133196 -118710660 - B3 SINE B2 -3 213 1 4 608 1075 97 7 0 chr11 3133248 3133393 -118710463 - B1_Mus1 SINE Alu -1 147 2 4 608 1186 65 113 0 chr11 3133638 3133806 -118710050 + B2_Mm2 SINE B2 1 187 -8 4 608 492 86 0 0 chr11 3133918 3133988 -118709868 + (T)n Simple_repeat Simple_repeat 1 70 0 4 608 240 342 13 0 chr11 3134659 3134735 -118709121 - ID4_ SINE ID -3 80 4 4 608 269 242 137 0 chr11 3134959 3135054 -118708802 + B1F1 SINE Alu 32 139 -10 4 608 910 240 10 20 chr11 3135835 3136039 -118707817 - B3 SINE B2 -7 209 8 4 608 1082 72 0 0 chr11 3136648 3136786 -118707070 - B1_Mus2 SINE Alu -9 138 1 4 608 856 27 0 17 chr11 3136894 3137009 -118706847 - B1_Mus1 SINE Alu 0 148 36 4 608 628 267 35 25 chr11 3136896 3137096 -118706760 - ID_B1 SINE B4 0 224 23 4 608 847 193 14 0 chr11 3137134 3137279 -118706577 - B1_Mus1 SINE Alu 0 148 2 4 608 229 239 237 9 chr11 3137423 3137537 -118706319 - B1F1 SINE Alu -9 140 1 4 608 486 88 0 0 chr11 3137682 3137750 -118706106 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 608 554 285 69 11 chr11 3137770 3137958 -118705898 - B3 SINE B2 -14 202 4 4 608 213 329 24 0 chr11 3138074 3138156 -118705700 + L2a LINE L2 3305 3388 -38 4 608 626 190 10 16 chr11 3138476 3138611 -118705245 + B1_Mus1 SINE Alu 13 148 -1 4 608 243 125 0 0 chr11 3138886 3138926 -118704930 + (T)n Simple_repeat Simple_repeat 1 40 0 4 608 622 189 65 7 chr11 3138928 3139067 -118704789 - B1_Mus1 SINE Alu -1 147 1 4 608 1180 51 0 0 chr11 3139757 3139895 -118703961 - B1_Mus1 SINE Alu -9 139 2 4 608 32 43 0 0 chr11 3140308 3140354 -118703502 + AT_rich Low_complexity Low_complexity 1 46 0 4 608 248 319 14 0 chr11 3140763 3140832 -118703024 + ID4_ SINE ID 14 83 0 4 608 525 173 199 7 chr11 3141215 3141366 -118702490 - B3 SINE B2 -3 213 34 4 608 569 198 17 33 chr11 3141415 3141535 -118702321 - PB1D9 SINE Alu -1 119 2 4 608 238 211 15 149 chr11 3141595 3141662 -118702194 + ID4_ SINE ID 5 62 -21 4 608 882 199 62 38 chr11 3141740 3141949 -118701907 + B3 SINE B2 2 215 -1 4 608 1170 62 7 0 chr11 3142116 3142262 -118701594 + B1_Mm SINE Alu 1 147 0 4 608 540 173 19 19 chr11 3142903 3143009 -118700847 + PB1D9 SINE Alu 2 107 -13 4 608 615 203 7 48 chr11 3145542 3145687 -118698169 + B2_Mm2 SINE B2 4 142 -53 4 9 271 237 52 13 chr11 3145707 3145784 -118698072 + ID_B1 SINE B4 142 221 -3 4 609 486 259 46 0 chr11 3146022 3146153 -118697703 + B3 SINE B2 70 206 -10 4 609 216 0 0 0 chr11 3146781 3146805 -118697051 + (T)n Simple_repeat Simple_repeat 1 24 0 4 609 1136 70 7 0 chr11 3146807 3146950 -118696906 - B1_Mus1 SINE Alu -4 144 1 4 609 640 221 29 0 chr11 3147062 3147202 -118696654 - B1_Mur4 SINE Alu -1 149 6 4 609 401 210 175 16 chr11 3147589 3147715 -118696141 + B1_Mur1 SINE Alu 1 146 -3 4 609 249 286 56 14 chr11 3148105 3148176 -118695680 - ID_B1 SINE B4 -58 166 93 4 609 963 101 136 0 chr11 3148426 3148595 -118695261 - B2_Mm1a SINE B2 0 193 2 4 609 1174 68 0 7 chr11 3148935 3149084 -118694772 + B1_Mus1 SINE Alu 1 148 0 4 609 216 0 0 0 chr11 3149084 3149108 -118694748 + (A)n Simple_repeat Simple_repeat 1 24 0 4 609 213 65 0 0 chr11 3149273 3149304 -118694552 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 4 609 198 0 0 0 chr11 3149333 3149355 -118694501 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 609 1433 121 103 4 chr11 3149409 3149641 -118694215 + L1_Mus1 LINE L1 6304 6558 -9 4 609 437 250 39 24 chr11 3150003 3150130 -118693726 + ID_B1 SINE B4 95 223 -1 4 609 547 183 42 25 chr11 3150608 3150726 -118693130 + PB1D9 SINE Alu 1 120 0 4 609 1140 126 0 22 chr11 3150784 3150963 -118692893 + B2_Mm2 SINE B2 2 176 -19 4 609 402 267 53 127 chr11 3150970 3151093 -118692763 - B4A SINE B4 -117 175 50 4 609 947 95 0 154 chr11 3151093 3151212 -118692644 - B1_Mus1 SINE Alu 0 148 44 4 609 1138 62 0 27 chr11 3151212 3151362 -118692494 + B1_Mus2 SINE Alu 2 147 0 4 609 947 95 0 154 chr11 3151362 3151417 -118692439 - B1_Mus1 SINE Alu -105 43 1 4 609 402 267 53 127 chr11 3151417 3151482 -118692374 - B4A SINE B4 -243 49 1 4 609 298 318 69 8 chr11 3151612 3151742 -118692114 + B4 SINE B4 70 207 -85 4 609 659 185 8 0 chr11 3151632 3151751 -118692105 + B1_Mus2 SINE Alu 5 124 -23 4 609 420 138 25 12 chr11 3151755 3151836 -118692020 + B3A SINE B2 4 85 -113 4 609 459 0 0 0 chr11 3151839 3151890 -118691966 + (CATA)n Simple_repeat Simple_repeat 1 51 0 4 609 224 299 39 177 chr11 3151890 3151917 -118691939 + B4 SINE B4 80 87 -205 4 609 373 238 143 62 chr11 3151917 3152029 -118691827 + B1_Mur1 SINE Alu 4 124 -25 4 609 901 85 132 0 chr11 3152506 3152635 -118691221 + B1_Mus1 SINE Alu 3 148 0 4 609 281 296 87 8 chr11 3152926 3153052 -118690804 + RSINE1 SINE B4 20 155 -10 4 609 393 293 69 58 chr11 3153125 3153299 -118690557 + B3A SINE B2 1 176 -22 4 609 346 138 202 22 chr11 3153349 3153438 -118690418 - B1_Mur4 SINE Alu -31 119 15 4 609 25 24 0 23 chr11 3153438 3153464 -118690392 + AT_rich Low_complexity Low_complexity 1 26 0 4 609 1284 107 32 5 chr11 3153464 3153652 -118690204 - B2_Mm2 SINE B2 -1 194 2 4 609 25 24 0 23 chr11 3153652 3153668 -118690188 + AT_rich Low_complexity Low_complexity 1 16 0 4 609 1341 73 11 16 chr11 3154147 3154329 -118689527 + B2_Mm1a SINE B2 4 184 -9 4 609 423 266 35 9 chr11 3154698 3154812 -118689044 - PB1D9 SINE Alu -2 118 2 4 609 590 296 80 0 chr11 3154862 3155038 -118688818 - ID_B1 SINE B4 -33 191 2 4 609 228 208 11 182 chr11 3155165 3155253 -118688603 + MLT1B LTR MaLR 1 73 -317 4 609 576 162 9 18 chr11 3155352 3155465 -118688391 + PB1D9 SINE Alu 1 112 -8 4 609 377 330 0 0 chr11 3155439 3155539 -118688317 + ID_B1 SINE B4 99 198 -26 4 609 22 35 0 0 chr11 3156962 3156991 -118686865 + AT_rich Low_complexity Low_complexity 1 29 0 4 609 482 226 19 19 chr11 3157077 3157185 -118686671 - B3 SINE B2 -107 109 2 4 609 222 250 300 0 chr11 3157306 3157406 -118686450 + ID_B1 SINE B4 91 220 -4 4 609 894 154 85 12 chr11 3157413 3157577 -118686279 + B2_Mm2 SINE B2 1 176 -19 4 609 483 33 0 0 chr11 3157582 3157643 -118686213 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 609 599 64 336 9 chr11 3157833 3157943 -118685913 - B1_Mus1 SINE Alu 0 148 3 4 609 417 285 90 67 chr11 3158051 3158318 -118685538 - L1M5 LINE L1 -459 5705 5433 4 609 261 215 31 0 chr11 3158394 3158459 -118685397 + MTEa LTR MaLR 299 365 -14 4 609 1219 34 0 7 chr11 3158490 3158637 -118685219 + B1_Mus1 SINE Alu 3 148 0 4 609 416 254 147 45 chr11 3158666 3158843 -118685013 + B3A SINE B2 3 197 -1 4 609 330 197 117 13 chr11 3158885 3158962 -118684894 + B4 SINE B4 3 87 -205 4 609 345 243 39 10 chr11 3159015 3159119 -118684737 + B3 SINE B2 98 204 -12 4 609 687 249 11 16 chr11 3159512 3159696 -118684160 + RLTR18B LTR ERVK 1 183 -329 4 609 230 250 49 16 chr11 3159784 3159845 -118684011 + RLTR18B LTR ERVK 119 181 -331 4 609 360 74 0 0 chr11 3159845 3159899 -118683957 + B1_Mus2 SINE Alu 94 147 0 4 609 1166 68 0 0 chr11 3159938 3160085 -118683771 - B1_Mus1 SINE Alu 0 148 2 4 609 276 206 265 7 chr11 3160096 3160243 -118683613 + L1MC4a LINE L1 6941 7125 -757 4 609 606 222 137 26 chr11 3160360 3160550 -118683306 + B3 SINE B2 6 216 0 4 609 248 217 17 0 chr11 3160712 3160772 -118683084 + PB1D10 SINE Alu 56 116 -1 4 609 1167 55 7 0 chr11 3160891 3161037 -118682819 + B1_Mus1 SINE Alu 1 147 -1 4 609 1370 29 109 0 chr11 3161061 3161236 -118682620 + B2_Mm2 SINE B2 2 195 0 4 609 582 144 293 0 chr11 3161288 3161462 -118682394 + MTC LTR MaLR 1 225 -196 4 609 333 191 0 0 chr11 3161484 3161547 -118682309 + B3 SINE B2 68 130 -86 4 609 24 0 0 0 chr11 3161577 3161601 -118682255 + AT_rich Low_complexity Low_complexity 1 24 0 4 609 455 214 35 33 chr11 3161601 3161772 -118682084 + MTC LTR MaLR 194 421 0 4 609 297 304 0 38 chr11 3161798 3161904 -118681952 + PB1D10 SINE Alu 3 104 -13 4 609 346 130 0 18 chr11 3161905 3161960 -118681896 + B3 SINE B2 2 55 -161 4 609 21 57 0 0 chr11 3162005 3162040 -118681816 + AT_rich Low_complexity Low_complexity 1 35 0 4 609 1136 62 14 0 chr11 3162204 3162348 -118681508 - B1_Mus2 SINE Alu 0 147 2 4 609 383 191 132 9 chr11 3162902 3163008 -118680848 + PB1D9 SINE Alu 2 120 0 5 609 203 170 21 0 chr11 3163008 3163055 -118680801 + A-rich Low_complexity Low_complexity 2 49 0 5 609 346 276 65 19 chr11 3163077 3163184 -118680672 + PB1D10 SINE Alu 6 117 0 5 609 546 254 62 51 chr11 3163195 3163373 -118680483 + B3 SINE B2 29 208 -8 5 609 255 61 0 0 chr11 3163519 3163552 -118680304 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 609 241 224 341 0 chr11 3163558 3163643 -118680213 - PB1D9 SINE Alu -5 115 2 5 609 21 57 0 0 chr11 3163649 3163684 -118680172 + AT_rich Low_complexity Low_complexity 1 35 0 5 609 461 254 17 8 chr11 3163684 3163803 -118680053 + PB1D9 SINE Alu 1 120 0 5 609 969 44 22 0 chr11 3164110 3164246 -118679610 + B1_Mus1 SINE Alu 10 148 0 5 609 625 288 52 24 chr11 3164262 3164472 -118679384 + B4A SINE B4 2 217 -75 5 609 378 280 83 17 chr11 3164536 3164656 -118679200 + B1_Mur3 SINE Alu 1 128 -21 5 609 451 269 0 9 chr11 3165009 3165118 -118678738 - B1_Mur2 SINE Alu -5 144 37 5 609 506 219 32 16 chr11 3165293 3165418 -118678438 + B1_Mur2 SINE Alu 18 144 -5 5 609 438 257 79 79 chr11 3167113 3167265 -118676591 + B4 SINE B4 72 223 -69 5 609 969 83 45 0 chr11 3167135 3167268 -118676588 + B1_Mus1 SINE Alu 10 148 0 5 609 761 181 43 21 chr11 3167386 3167527 -118676329 + B1_Mur4 SINE Alu 1 144 -6 5 609 206 265 0 0 chr11 3167532 3167581 -118676275 + A-rich Low_complexity Low_complexity 1 49 0 5 609 459 274 88 0 chr11 3167770 3167883 -118675973 - B1_Mur1 SINE Alu -21 128 6 5 609 709 121 34 17 chr11 3167906 3168024 -118675832 - B1_Mus2 SINE Alu 0 147 28 5 609 22 35 0 0 chr11 3168158 3168187 -118675669 + AT_rich Low_complexity Low_complexity 1 29 0 5 609 606 163 0 30 chr11 3168200 3168301 -118675555 - B3 SINE B2 -118 98 1 5 609 376 269 0 0 chr11 3168355 3168433 -118675423 - RSINE1 SINE B4 -85 80 3 5 609 928 124 53 63 chr11 3168518 3168679 -118675177 + B2_Mm2 SINE B2 2 168 -27 5 609 216 0 0 0 chr11 3168679 3168703 -118675153 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 609 1165 65 0 0 chr11 3168703 3168841 -118675015 - B1_Mus1 SINE Alu -8 140 3 5 609 928 124 53 63 chr11 3168841 3168867 -118674989 + B2_Mm2 SINE B2 169 187 -8 5 609 324 274 86 86 chr11 3169529 3169645 -118674211 + B1F SINE Alu 2 117 -3 5 609 216 281 194 20 chr11 3169650 3169748 -118674108 + PB1D10 SINE Alu 2 116 -1 5 609 1226 68 0 0 chr11 3169750 3169897 -118673959 + B1_Mus1 SINE Alu 1 147 -1 5 609 637 127 0 38 chr11 3169984 3170090 -118673766 - B1_Mus2 SINE Alu -37 110 9 5 609 329 259 72 27 chr11 3169991 3170102 -118673754 - B4 SINE B4 -98 194 79 5 609 233 192 19 19 chr11 3170241 3170294 -118673562 - PB1D10 SINE Alu -2 115 63 5 609 198 0 0 0 chr11 3170417 3170439 -118673417 + (TTG)n Simple_repeat Simple_repeat 2 23 0 5 609 784 261 18 46 chr11 3170470 3170687 -118673169 + B3 SINE B2 6 216 0 5 609 207 125 0 0 chr11 3170698 3170738 -118673118 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 609 306 0 0 0 chr11 3170738 3170772 -118673084 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 609 377 220 158 10 chr11 3170779 3170880 -118672976 - RSINE1 SINE B4 -38 127 12 5 609 236 263 66 22 chr11 3170946 3170977 -118672879 + ORR1B1-int LTR MaLR 613 649 -860 5 609 911 89 0 0 chr11 3170977 3171101 -118672755 + B1_Mus2 SINE Alu 3 126 -21 5 609 1697 149 18 76 chr11 3171259 3171600 -118672256 + RMER6A LTR ERVK 1 321 -435 5 609 402 264 22 11 chr11 3171686 3171778 -118672078 + B3 SINE B2 27 119 -97 5 609 248 342 36 95 chr11 3171690 3171826 -118672030 - B4 SINE B4 -91 201 76 5 609 518 207 77 8 chr11 3171826 3171943 -118671913 + B3A SINE B2 1 125 -73 5 609 371 290 135 20 chr11 3171928 3172076 -118671780 + B3 SINE B2 44 208 -8 5 609 334 235 223 10 chr11 3172120 3172223 -118671633 - B1F2 SINE Alu 0 149 25 5 609 6982 63 24 48 chr11 3172528 3172723 -118671133 - L1Md_F2 LINE L1 0 6582 6396 5 609 441 0 0 0 chr11 3172731 3172780 -118671076 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 609 1173 49 0 7 chr11 3172780 3172916 -118670940 - B1_Mus1 SINE Alu -8 140 5 5 609 11511 63 16 19 chr11 3172916 3174976 -118668880 - L1Md_F2 LINE L1 -187 6395 4345 5 609 5837 47 6 0 chr11 3174976 3175680 -118668176 + L1Md_F2 LINE L1 5875 6582 0 5 609 10637 157 6 174 chr11 3175680 3175908 -118667948 - L1_Mur2 LINE L1 -1524 4353 4175 5 609 1141 140 290 20 chr11 3175908 3176156 -118667700 + ORR1B2 LTR MaLR 1 315 -52 5 609 10637 157 6 174 chr11 3176156 3177081 -118666775 - L1_Mur2 LINE L1 -1524 4174 3445 5 609 321 239 14 0 chr11 3177093 3177164 -118666692 + B1_Mur1 SINE Alu 76 147 -2 5 609 232 308 39 0 chr11 3177506 3177584 -118666272 - PB1D7 SINE Alu -9 111 31 5 609 315 0 0 0 chr11 3177616 3177651 -118666205 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 609 1174 44 0 0 chr11 3177651 3177788 -118666068 - B1_Mus2 SINE Alu -9 138 2 5 609 300 273 0 15 chr11 3177843 3177910 -118665946 - HAL1-3A_ME LINE L1 -817 2041 1976 5 609 431 188 0 8 chr11 3177910 3178028 -118665828 + (TG)n Simple_repeat Simple_repeat 1 117 0 5 609 217 320 26 39 chr11 3178051 3178129 -118665727 - RSINE1 SINE B4 -17 148 72 5 609 505 281 82 22 chr11 3178184 3178366 -118665490 + B3 SINE B2 1 193 -23 5 609 1218 55 0 7 chr11 3178683 3178831 -118665025 + B1_Mus1 SINE Alu 1 147 -1 5 609 256 386 23 8 chr11 3178835 3178968 -118664888 + B4 SINE B4 70 204 -88 5 609 765 197 0 36 chr11 3178862 3178999 -118664857 + B1_Mus1 SINE Alu 14 145 -3 5 609 1126 70 0 7 chr11 3179035 3179179 -118664677 + B1_Mm SINE Alu 5 147 0 5 609 330 45 0 0 chr11 3179179 3179223 -118664633 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 5 609 1098 73 131 24 chr11 3179342 3179510 -118664346 + B2_Mm2 SINE B2 1 186 -9 5 609 264 200 182 0 chr11 3179540 3179595 -118664261 - ID4_ SINE ID -10 73 9 5 609 1102 59 7 0 chr11 3179619 3179755 -118664101 + B1_Mus1 SINE Alu 1 137 -11 5 609 182 37 0 36 chr11 3180160 3180188 -118663668 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5 609 699 217 28 7 chr11 3180188 3180321 -118663535 - B1_Mus1 SINE Alu -10 138 3 5 609 234 91 0 0 chr11 3180365 3180398 -118663458 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 609 340 135 0 0 chr11 3180399 3180451 -118663405 + ORR1A3 LTR MaLR 275 326 0 5 609 752 222 42 74 chr11 3180839 3181030 -118662826 - B3A SINE B2 0 216 27 5 609 3925 98 35 4 chr11 3181030 3181575 -118662281 + LTRIS2 LTR ERV1 3 564 0 5 609 752 220 38 70 chr11 3181575 3181603 -118662253 - B3A SINE B2 -172 26 3 5 609 532 257 96 78 chr11 3181631 3181901 -118661955 - RLTR12B LTR ERVK -12 516 242 5 609 357 159 0 0 chr11 3181901 3181964 -118661892 + CT-rich Low_complexity Low_complexity 2 64 0 5 609 642 297 22 53 chr11 3181964 3182245 -118661611 - RLTR12B LTR ERVK -253 315 62 5 609 2886 63 139 137 chr11 3182245 3182756 -118661100 + RLTR1B LTR ERV1 1 512 0 5 609 642 293 23 43 chr11 3182756 3182773 -118661083 - RLTR12B LTR ERVK -467 61 47 5 609 767 105 123 46 chr11 3182874 3183004 -118660852 + B1_Mus1 SINE Alu 1 140 -8 5 609 282 56 0 0 chr11 3183004 3183040 -118660816 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 5 609 625 300 0 0 chr11 3183210 3183350 -118660506 - ID_B1 SINE B4 -1 223 84 5 609 419 115 0 0 chr11 3183408 3183469 -118660387 - B2_Mm2 SINE B2 -53 142 82 5 609 404 20 0 0 chr11 3183467 3183517 -118660339 + B1_Mus1 SINE Alu 35 84 -64 5 609 408 260 187 38 chr11 3183512 3183674 -118660182 + B3 SINE B2 46 210 -6 5 609 240 163 116 0 chr11 3183765 3183798 -118660058 + B1F1 SINE Alu 9 46 -103 5 609 3039 208 103 51 chr11 3183798 3184639 -118659217 + RMER19B LTR ERVK 1 886 -16 5 609 1248 54 0 0 chr11 3184639 3184786 -118659070 + B1_Mm SINE Alu 1 147 0 5 609 484 137 0 136 chr11 3184826 3184944 -118658912 + B1_Mur3 SINE Alu 46 147 0 5 609 256 316 50 12 chr11 3185448 3185528 -118658328 - ID4_ SINE ID 0 83 1 5 609 241 282 14 1 chr11 3185542 3185619 -118658237 - L2a LINE L2 -1 3425 3298 5 609 238 248 248 0 chr11 3185641 3185742 -118658114 + B4 SINE B4 2 127 -165 5 609 513 281 9 0 chr11 3186237 3186351 -118657505 + RSINE1 SINE B4 3 117 -48 5 609 495 82 0 0 chr11 3186351 3186424 -118657432 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 609 34 42 0 0 chr11 3186440 3186488 -118657368 + AT_rich Low_complexity Low_complexity 1 48 0 5 609 284 70 23 0 chr11 3186522 3186565 -118657291 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 609 1266 47 0 0 chr11 3186663 3186811 -118657045 - B1_Mus1 SINE Alu 0 148 1 5 609 249 217 57 178 chr11 3187024 3187181 -118656675 + L2a LINE L2 3271 3408 -18 5 609 189 0 0 0 chr11 3187188 3187209 -118656647 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 5 609 247 284 66 38 chr11 3188456 3188562 -118655294 - MIRc SINE MIR -133 143 35 5 609 22 0 0 0 chr11 3189523 3189545 -118654311 + GC_rich Low_complexity Low_complexity 1 22 0 5 609 26 19 0 71 chr11 3190219 3190275 -118653581 + GC_rich Low_complexity Low_complexity 1 52 0 5 609 216 0 0 0 chr11 3193838 3193862 -118649994 + (CAAGG)n Simple_repeat Simple_repeat 4 27 0 5 609 802 140 7 117 chr11 3196786 3196940 -118646916 + B1_Mur2 SINE Alu 11 147 -2 6 609 294 284 6 185 chr11 3196940 3196958 -118646898 + MT2B LTR ERVL 175 315 -286 6 609 241 356 88 10 chr11 3197955 3198057 -118645799 + MamGypLTR1b LTR Gypsy 526 635 -147 6 609 484 232 113 2 chr11 3198620 3198748 -118645108 + ID_B1 SINE B4 90 233 -59 6 609 1239 41 7 0 chr11 3200666 3200812 -118643044 + B1_Mus1 SINE Alu 2 148 0 6 609 270 243 0 0 chr11 3200826 3200900 -118642956 + A-rich Low_complexity Low_complexity 1 74 0 6 609 228 319 43 0 chr11 3201334 3201403 -118642453 + ID4_ SINE ID 2 73 -10 6 609 828 206 106 0 chr11 3201518 3201678 -118642178 - B3A SINE B2 -19 179 3 6 609 236 385 11 11 chr11 3201716 3201808 -118642048 + PB1D9 SINE Alu 20 111 -9 6 609 26 0 0 0 chr11 3201864 3201890 -118641966 + AT_rich Low_complexity Low_complexity 1 26 0 6 609 1160 68 0 20 chr11 3201890 3202040 -118641816 - B1_Mus1 SINE Alu 0 148 2 6 609 249 287 89 33 chr11 3202042 3202132 -118641724 + B1_Mur1 SINE Alu 53 147 -2 6 609 1435 215 159 89 chr11 3203362 3203858 -118639998 - MT2A LTR ERVL -2 531 1 6 609 405 162 74 83 chr11 3204372 3204480 -118639376 + B1_Mur4 SINE Alu 44 150 0 6 609 24 0 0 0 chr11 3204491 3204515 -118639341 + AT_rich Low_complexity Low_complexity 1 24 0 6 609 505 115 229 0 chr11 3204692 3204788 -118639068 - B1_Mus1 SINE Alu -1 147 30 6 609 692 210 24 0 chr11 3204908 3205032 -118638824 + RSINE1 SINE B4 2 128 -37 6 609 1131 52 0 0 chr11 3205138 3205272 -118638584 + B1_Mus2 SINE Alu 1 134 -13 6 609 183 42 0 0 chr11 3205274 3205298 -118638558 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 609 207 100 0 0 chr11 3209656 3209686 -118634170 + (T)n Simple_repeat Simple_repeat 1 30 0 6 609 860 71 0 0 chr11 3209686 3209798 -118634058 - B1_Mus1 SINE Alu 0 148 37 6 609 297 51 0 0 chr11 3209904 3209943 -118633913 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 609 605 230 33 9 chr11 3210046 3210225 -118633631 - B3 SINE B2 0 195 1 6 609 785 259 71 55 chr11 3210225 3210452 -118633404 - B4 SINE B4 -61 231 1 6 609 1231 55 0 0 chr11 3211568 3211714 -118632142 - B1_Mus2 SINE Alu 0 147 2 6 609 529 164 70 35 chr11 3212716 3212830 -118631026 + ID_B1 SINE B4 107 224 0 6 609 489 228 79 157 chr11 3213071 3213083 -118630773 - B4 SINE B4 -58 234 210 6 609 887 96 66 7 chr11 3213083 3213219 -118630637 - B1_Mus2 SINE Alu -3 144 1 6 609 489 228 79 157 chr11 3213219 3213300 -118630556 - B4 SINE B4 -58 209 24 6 609 595 234 153 54 chr11 3214428 3214631 -118629225 + ID_B1 SINE B4 1 223 -1 6 609 1271 28 0 0 chr11 3214645 3214788 -118629068 + B1_Mus2 SINE Alu 1 143 -4 6 609 1117 97 0 7 chr11 3215002 3215147 -118628709 + B1_Mus1 SINE Alu 5 148 0 6 609 769 242 128 5 chr11 3215176 3215363 -118628493 + B3 SINE B2 7 216 0 6 609 625 265 60 0 chr11 3215379 3215530 -118628326 + B3A SINE B2 1 160 -38 6 609 297 0 0 0 chr11 3215541 3215574 -118628282 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 609 1185 75 0 0 chr11 3215618 3215765 -118628091 + B1_Mm SINE Alu 1 147 0 6 609 227 55 0 53 chr11 3215766 3215804 -118628052 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 6 609 1025 198 45 0 chr11 3216127 3216329 -118627527 + B3 SINE B2 1 211 -5 6 609 216 356 0 0 chr11 3216367 3216426 -118627430 - ID4_ SINE ID -23 60 2 6 609 1174 75 0 0 chr11 3216439 3216585 -118627271 - B1_Mus2 SINE Alu 0 147 2 6 609 277 286 22 77 chr11 3216652 3216743 -118627113 + ORR1E LTR MaLR 1 86 -273 6 609 541 221 0 9 chr11 3216743 3216857 -118626999 - L1MC LINE L1 -617 5716 5604 6 609 204 40 0 0 chr11 3216871 3216896 -118626960 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 609 225 264 57 0 chr11 3216972 3217025 -118626831 - B4A SINE B4 -165 127 72 6 609 201 138 0 0 chr11 3217047 3217076 -118626780 + (TCC)n Simple_repeat Simple_repeat 1 29 0 6 609 252 315 177 0 chr11 3217077 3217207 -118626649 - ID_B1 SINE B4 -46 246 94 6 609 251 289 195 16 chr11 3217092 3217215 -118626641 - B1F1 SINE Alu -4 145 1 6 609 418 212 9 147 chr11 3217219 3217335 -118626521 - PB1D9 SINE Alu 0 120 21 6 609 198 0 0 0 chr11 3217393 3217415 -118626441 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 6 609 3046 160 15 164 chr11 3217452 3217869 -118625987 + RMER6A LTR ERVK 1 322 -434 6 609 1209 54 0 20 chr11 3217869 3218019 -118625837 + B1_Mm SINE Alu 1 147 0 6 609 3046 160 15 164 chr11 3218019 3218030 -118625826 + RMER6A LTR ERVK 323 329 -427 6 609 333 0 0 0 chr11 3218030 3218067 -118625789 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 609 3046 160 15 164 chr11 3218067 3218208 -118625648 + RMER6A LTR ERVK 330 443 -313 6 609 1369 52 17 17 chr11 3218208 3218384 -118625472 + B2_Mm2 SINE B2 1 176 -19 6 609 3046 160 15 164 chr11 3218384 3218701 -118625155 + RMER6A LTR ERVK 444 756 0 6 609 327 274 109 36 chr11 3218768 3218878 -118624978 + PB1D7 SINE Alu 3 120 0 6 609 1001 174 71 31 chr11 3218965 3219161 -118624695 + B3 SINE B2 1 204 -12 6 609 585 0 0 0 chr11 3219173 3219238 -118624618 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 6 609 674 179 95 22 chr11 3219240 3219377 -118624479 + B1_Mur1 SINE Alu 2 148 -1 6 609 774 171 6 64 chr11 3219452 3219608 -118624248 + B1_Mus1 SINE Alu 2 148 0 6 609 477 241 28 33 chr11 3219608 3219788 -118624068 - L1MC LINE L1 -868 5278 5100 6 609 234 0 0 0 chr11 3219799 3219825 -118624031 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 6 609 285 303 0 0 chr11 3219828 3219894 -118623962 - B1F1 SINE Alu -57 92 27 6 609 449 303 84 7 chr11 3219964 3220107 -118623749 - RSINE1 SINE B4 -10 155 2 6 609 254 169 324 0 chr11 3220143 3220279 -118623577 - L1MC LINE L1 -1117 5029 4850 6 609 356 287 119 9 chr11 3220282 3220391 -118623465 + PB1 SINE Alu 3 123 -4 6 609 692 220 26 26 chr11 3220526 3220680 -118623176 - RSINE1 SINE B4 -10 155 2 6 609 722 194 81 27 chr11 3220742 3220964 -118622892 - L1MC LINE L1 -1451 4695 4462 6 609 3984 157 111 138 chr11 3221049 3221567 -118622289 + RLTR25B LTR ERVK 7 535 -493 6 609 1007 60 90 0 chr11 3221567 3221701 -118622155 + B1_Mm SINE Alu 1 146 -1 6 609 3984 157 111 138 chr11 3221701 3222232 -118621624 + RLTR25B LTR ERVK 536 1028 0 6 609 1136 89 0 0 chr11 3222294 3222440 -118621416 + B1_Mus1 SINE Alu 3 148 0 6 609 532 291 156 34 chr11 3222468 3222763 -118621093 - L1MC LINE L1 -1884 4262 3932 6 609 348 266 30 60 chr11 3222785 3222885 -118620971 - RSINE1 SINE B4 -13 152 56 6 609 234 290 29 0 chr11 3223155 3223224 -118620632 + ID4 SINE ID 2 72 -11 6 609 658 246 0 8 chr11 3223227 3223707 -118620149 + (CA)n Simple_repeat Simple_repeat 1 475 0 6 609 417 262 41 62 chr11 3223848 3224043 -118619813 + RMER15 LTR ERVL 30 220 -355 6 609 463 216 226 0 chr11 3224046 3224245 -118619611 + RMER15 LTR ERVL 332 575 0 6 609 247 188 31 15 chr11 3224294 3224359 -118619497 + ID2 SINE ID 1 66 -17 6 609 1162 48 7 0 chr11 3224478 3224624 -118619232 + B1_Mus2 SINE Alu 1 147 0 6 609 687 254 70 15 chr11 3224649 3224849 -118619007 + B3 SINE B2 2 212 -4 6 609 773 196 0 0 chr11 3224854 3224987 -118618869 + B1_Mur1 SINE Alu 7 139 -10 6 609 259 288 0 0 chr11 3225043 3225102 -118618754 + ID4 SINE ID 14 72 -11 6 609 1218 111 21 5 chr11 3225197 3225388 -118618468 + B2_Mm2 SINE B2 1 194 -1 6 609 1151 55 0 0 chr11 3225517 3225663 -118618193 + B1_Mus1 SINE Alu 1 146 -2 6 609 359 300 112 13 chr11 3226030 3226182 -118617674 + L1M4 LINE L1 4744 4910 -1236 6 609 1137 62 0 0 chr11 3226229 3226375 -118617481 + B1_Mus2 SINE Alu 2 147 0 6 609 291 113 0 0 chr11 3226375 3226428 -118617428 + (A)n Simple_repeat Simple_repeat 1 53 0 6 609 330 284 73 9 chr11 3226863 3226973 -118616883 - PB1D10 SINE Alu 0 117 1 6 609 606 209 39 8 chr11 3227149 3227279 -118616577 - B1F2 SINE Alu -6 143 10 6 609 270 256 37 49 chr11 3227807 3227889 -118615967 + B1F2 SINE Alu 3 83 -66 6 609 1393 70 37 0 chr11 3227890 3228077 -118615779 + B2_Mm2 SINE B2 2 195 0 6 609 284 300 0 0 chr11 3228231 3228311 -118615545 - ID4 SINE ID -3 80 1 6 609 303 241 35 0 chr11 3228330 3228417 -118615439 - B3A SINE B2 0 198 109 6 609 187 352 48 35 chr11 3228669 3228896 -118614960 + L2a LINE L2 3196 3425 -1 6 609 577 280 34 22 chr11 3228922 3229101 -118614755 - ID_B1 SINE B4 -5 219 39 6 609 462 284 115 72 chr11 3229136 3229371 -118614485 + B4A SINE B4 47 291 -1 6 609 190 136 45 0 chr11 3229387 3229431 -118614425 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 609 475 259 94 24 chr11 3229494 3229664 -118614192 - B3A SINE B2 -15 183 2 6 609 429 278 109 43 chr11 3229693 3229877 -118613979 + B3A SINE B2 2 197 -1 6 609 598 74 0 40 chr11 3231692 3231791 -118612065 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 6 609 264 253 67 42 chr11 3233867 3233979 -118609877 + B1F SINE Alu 1 120 0 6 609 280 250 37 24 chr11 3234645 3234727 -118609129 - ID_B1 SINE B4 -2 222 140 6 609 565 236 14 27 chr11 3234752 3234900 -118608956 - B1_Mur2 SINE Alu -3 146 1 6 609 970 111 21 0 chr11 3235313 3235457 -118608399 - B1_Mus2 SINE Alu 0 147 1 6 609 1014 65 7 0 chr11 3236441 3236579 -118607277 - B1_Mus2 SINE Alu 0 147 9 6 609 546 79 0 0 chr11 3236614 3236690 -118607166 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 609 695 220 118 6 chr11 3236693 3236862 -118606994 - B3 SINE B2 -28 188 1 6 609 425 218 29 12 chr11 3236947 3237119 -118606737 + CT-rich Low_complexity Low_complexity 1 175 0 6 609 207 300 0 0 chr11 3237128 3237178 -118606678 + C-rich Low_complexity Low_complexity 1 50 0 7 609 259 250 58 179 chr11 3238327 3238380 -118605476 - MT2B LTR ERVL -263 338 174 7 609 713 122 39 1 chr11 3238380 3238515 -118605341 - B1_Mur4 SINE Alu -3 145 9 7 609 1149 55 0 0 chr11 3238772 3238918 -118604938 + B1_Mus2 SINE Alu 2 147 0 7 609 290 219 31 0 chr11 3239085 3239149 -118604707 - MIR3 SINE MIR -34 174 109 7 609 197 239 83 6 chr11 3239318 3239398 -118604458 - MIR SINE MIR -119 149 65 7 609 198 0 0 0 chr11 3239563 3239585 -118604271 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 609 216 296 102 0 chr11 3240167 3240275 -118603581 + MIRb SINE MIR 3 121 -147 7 609 1016 96 108 6 chr11 3240357 3240524 -118603332 - B2_Mm2 SINE B2 -10 185 2 7 609 261 0 0 0 chr11 3240580 3240609 -118603247 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 609 264 30 0 0 chr11 3240609 3240641 -118603215 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 609 220 49 48 24 chr11 3240837 3240879 -118602977 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 7 609 1205 27 0 7 chr11 3240884 3241031 -118602825 - B1_Mus2 SINE Alu -1 146 1 7 609 409 248 127 8 chr11 3241082 3241216 -118602640 - RSINE1 SINE B4 -13 152 3 7 609 242 164 278 40 chr11 3243404 3243490 -118600366 - PB1D9 SINE Alu -40 110 7 7 609 333 320 38 30 chr11 3243600 3243732 -118600124 - B1_Mus2 SINE Alu -13 134 2 7 609 516 213 32 8 chr11 3244064 3244187 -118599669 - B3 SINE B2 -39 177 52 7 609 324 241 92 0 chr11 3251171 3251258 -118592598 - B1_Mus2 SINE Alu -44 103 9 7 609 229 303 89 20 chr11 3251258 3251272 -118592584 - ID_B1 SINE B4 -41 183 76 7 609 642 139 276 46 chr11 3251295 3251469 -118592387 + B3 SINE B2 2 215 -1 7 609 1452 43 27 0 chr11 3251513 3251700 -118592156 - B2_Mm1t SINE B2 0 193 2 7 609 180 0 0 0 chr11 3251716 3251736 -118592120 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 7 609 342 0 0 0 chr11 3251783 3251821 -118592035 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 7 609 657 256 77 5 chr11 3251823 3252019 -118591837 - B3 SINE B2 -6 210 1 7 609 373 216 62 94 chr11 3252033 3252161 -118591695 - PB1 SINE Alu -2 125 2 7 609 267 298 36 0 chr11 3252179 3252263 -118591593 - PB1D7 SINE Alu -2 118 32 7 609 202 328 0 15 chr11 3252351 3252416 -118591440 - L2 LINE L2 -619 2800 2737 7 609 312 274 0 0 chr11 3252450 3252523 -118591333 + ID4 SINE ID 2 74 -9 7 609 249 333 23 0 chr11 3253133 3253220 -118590636 + RSINE1 SINE B4 32 120 -45 7 609 236 315 27 0 chr11 3253626 3253699 -118590157 + ID4_ SINE ID 1 75 -8 7 609 688 94 239 0 chr11 3254038 3254155 -118589701 - B1_Mus1 SINE Alu -2 146 2 7 609 622 245 134 34 chr11 3254368 3254630 -118589226 - B4A SINE B4 -2 290 3 7 609 283 238 74 12 chr11 3254642 3254723 -118589133 - PB1D7 SINE Alu -8 112 27 7 609 1107 44 0 0 chr11 3254735 3254870 -118588986 + B1_Mus2 SINE Alu 1 135 -12 7 609 318 80 0 0 chr11 3254871 3254921 -118588935 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 7 609 354 283 71 0 chr11 3254955 3255054 -118588802 - PB1D10 SINE Alu -6 111 6 7 609 242 301 108 34 chr11 3256175 3256323 -118587533 + L2 LINE L2 2651 2809 -610 7 609 1471 38 32 0 chr11 3256554 3256740 -118587116 - B2_Mm1t SINE B2 0 193 2 7 609 1028 93 0 0 chr11 3257023 3257162 -118586694 + B1_Mus2 SINE Alu 2 140 -7 7 609 181 0 33 33 chr11 3257164 3257194 -118586662 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 609 1791 171 24 86 chr11 3257298 3257345 -118586511 - ORR1B2 LTR MaLR -8 359 328 7 609 1481 52 5 0 chr11 3257345 3257536 -118586320 - B2_Mm1a SINE B2 0 193 2 7 609 1791 171 24 86 chr11 3257536 3257871 -118585985 - ORR1B2 LTR MaLR -40 327 1 7 609 933 103 13 27 chr11 3258428 3258577 -118585279 - B1_Mus2 SINE Alu 0 147 1 7 609 189 230 159 11 chr11 3258725 3258813 -118585043 + MIR3 SINE MIR 106 206 -2 7 609 432 307 40 30 chr11 3259600 3259798 -118584058 + RLTR42-int LTR ERVK 1168 1367 -4155 7 609 301 275 0 12 chr11 3261134 3261215 -118582641 - RMER10A LTR ERVL -19 423 344 7 609 633 76 160 9 chr11 3261314 3261420 -118582436 + B2_Mm2 SINE B2 2 123 -72 7 609 298 107 18 18 chr11 3261420 3261477 -118582379 + (TCC)n Simple_repeat Simple_repeat 1 57 0 7 609 329 117 355 0 chr11 3261477 3261587 -118582269 - B2_Mm2 SINE B2 0 195 47 7 609 1258 65 47 0 chr11 3261638 3261808 -118582048 - B2_Mm1t SINE B2 -14 179 2 7 609 731 149 67 27 chr11 3261860 3262036 -118581820 - B3A SINE B2 -8 187 1 7 609 24 0 0 0 chr11 3262050 3262074 -118581782 + AT_rich Low_complexity Low_complexity 1 24 0 7 609 1092 52 0 0 chr11 3262106 3262241 -118581615 + B1_Mm SINE Alu 5 139 -8 7 609 374 51 0 48 chr11 3262241 3262303 -118581553 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 7 609 1045 189 38 28 chr11 3262303 3262515 -118581341 + ORR1C2 LTR MaLR 16 229 -155 7 609 261 142 144 0 chr11 3262675 3262739 -118581117 + B1_Mur4 SINE Alu 47 123 -26 7 609 305 318 114 21 chr11 3262888 3263081 -118580775 - B3 SINE B2 -5 211 1 7 609 415 91 91 0 chr11 3263376 3263442 -118580414 - B1_Mm SINE Alu -5 142 71 7 609 270 246 87 63 chr11 3263498 3263624 -118580232 + MT2B LTR ERVL 136 264 -337 7 609 778 75 12 27 chr11 3263516 3263657 -118580199 + B1_Mm SINE Alu 39 145 -2 7 609 245 203 130 0 chr11 3263843 3263912 -118579944 - PB1 SINE Alu -3 124 47 7 609 520 155 39 10 chr11 3264267 3264371 -118579485 - PB1D9 SINE Alu -1 119 13 7 609 357 212 23 23 chr11 3264301 3264388 -118579468 - B4A SINE B4 -123 169 83 7 609 306 241 12 71 chr11 3264393 3264478 -118579378 - PB1D7 SINE Alu -1 119 40 7 609 258 182 36 0 chr11 3264533 3264588 -118579268 - PB1D9 SINE Alu -5 115 59 7 609 2064 174 190 27 chr11 3264685 3265233 -118578623 + Lx9 LINE L1 7007 7643 -1 7 609 267 31 0 0 chr11 3265262 3265294 -118578562 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 609 810 113 8 0 chr11 3265327 3265451 -118578405 + B1_Mur4 SINE Alu 23 147 -3 7 609 292 346 24 15 chr11 3266215 3266383 -118577473 + L2c LINE L2 3198 3370 -5 7 609 415 103 324 1 chr11 3271892 3271999 -118571857 + MTD LTR MaLR 273 405 -14 7 609 647 299 89 24 chr11 3272623 3272870 -118570986 - MER58B DNA MER1_type 0 341 79 7 609 746 103 0 0 chr11 3272872 3272979 -118570877 + B2_Mm2 SINE B2 1 107 -88 7 609 1445 53 16 0 chr11 3273063 3273250 -118570606 + B2_Mm2 SINE B2 2 191 -4 7 609 493 157 28 47 chr11 3273280 3273387 -118570469 + B1_Mur1 SINE Alu 45 149 0 7 609 393 265 43 43 chr11 3273587 3273725 -118570131 - MIR SINE MIR -123 139 2 7 609 194 111 0 0 chr11 3273742 3273769 -118570087 + MIR SINE MIR 33 59 -203 7 609 231 272 24 12 chr11 3273760 3273842 -118570014 + MIRb SINE MIR 185 267 -1 7 609 319 202 126 63 chr11 3275180 3275275 -118568581 - PB1D10 SINE Alu -8 109 9 7 609 1349 162 133 148 chr11 3275404 3275487 -118568369 + MTC LTR MaLR 2 67 -354 7 609 676 159 91 0 chr11 3275487 3275619 -118568237 + B1_Mus2 SINE Alu 4 147 0 7 609 1349 162 133 148 chr11 3275619 3275948 -118567908 + MTC LTR MaLR 68 408 -13 7 609 201 356 38 9 chr11 3276517 3276622 -118567234 - MIRc SINE MIR -146 122 15 7 610 719 84 42 0 chr11 3276947 3277066 -118566790 + BC1_Mm scRNA scRNA 1 124 -28 7 610 858 170 7 7 chr11 3277599 3277741 -118566115 - B1_Mus1 SINE Alu -1 147 6 7 610 189 281 171 19 chr11 3277741 3277846 -118566010 - MIRm SINE MIR -122 154 34 7 610 427 215 90 36 chr11 3278030 3278141 -118565715 - PB1D9 SINE Alu -2 118 2 7 610 286 280 13 0 chr11 3278512 3278587 -118565269 + ID4 SINE ID 2 77 -6 7 610 720 171 78 0 chr11 3278840 3278969 -118564887 + B1F2 SINE Alu 2 140 -9 7 610 969 103 7 40 chr11 3279109 3279261 -118564595 - B1_Mus1 SINE Alu -1 147 1 7 610 544 214 206 0 chr11 3280139 3280265 -118563591 + B3 SINE B2 51 202 -14 7 610 338 184 184 48 chr11 3280278 3280381 -118563475 - B3A SINE B2 -81 117 1 7 610 284 245 149 9 chr11 3280520 3280627 -118563229 + MIRm SINE MIR 45 166 -110 7 610 410 282 8 71 chr11 3280909 3281035 -118562821 + PB1 SINE Alu 7 124 -3 7 610 246 62 0 0 chr11 3281141 3281173 -118562683 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 7 610 255 208 0 54 chr11 3281824 3281880 -118561976 - ID_B1 SINE B4 -32 192 140 7 610 1539 212 97 3 chr11 3281903 3282253 -118561603 + MTD LTR MaLR 13 395 -24 7 610 1530 53 21 0 chr11 3282312 3282502 -118561354 - B2_Mm2 SINE B2 -1 194 1 7 610 249 242 53 132 chr11 3283197 3283311 -118560545 - BC1_Mm scRNA scRNA -42 110 6 7 610 211 146 122 0 chr11 3283275 3283316 -118560540 - ID SINE ID -178 46 1 7 610 610 195 81 0 chr11 3283368 3283491 -118560365 - B3 SINE B2 -36 180 48 7 610 361 121 154 53 chr11 3283497 3283605 -118560251 - B2_Mm2 SINE B2 -8 185 47 7 610 1269 107 11 0 chr11 3283642 3283819 -118560037 - B2_Mm1t SINE B2 -14 179 1 7 610 498 300 80 55 chr11 3283890 3283913 -118559943 - B3 SINE B2 -4 212 187 8 610 889 89 88 7 chr11 3283913 3284049 -118559807 - B1_Mur3 SINE Alu 0 149 3 8 610 712 279 80 0 chr11 3284049 3284226 -118559630 - B3A SINE B2 -2 196 7 8 610 495 286 24 68 chr11 3284365 3284571 -118559285 + B3A SINE B2 2 198 0 8 610 801 196 21 0 chr11 3284582 3284725 -118559131 + B1_Mur3 SINE Alu 4 149 0 8 610 615 178 0 0 chr11 3284776 3284911 -118558945 + GA-rich Low_complexity Low_complexity 3 137 0 8 610 352 324 125 9 chr11 3285117 3285229 -118558627 + PB1 SINE Alu 1 125 -2 8 610 3050 32 0 3 chr11 3285613 3285960 -118557896 + ORR1A0 LTR MaLR 1 346 0 8 610 467 236 37 9 chr11 3286730 3286837 -118557019 - PB1D9 SINE Alu 0 120 11 8 610 337 269 26 0 chr11 3286889 3286967 -118556889 + PB1D9 SINE Alu 2 81 -39 8 610 252 276 182 10 chr11 3287537 3287636 -118556220 - PB1D10 SINE Alu -1 116 1 8 610 432 247 21 11 chr11 3287647 3287741 -118556115 - PB1D10 SINE Alu -3 114 20 8 610 206 361 10 10 chr11 3287761 3287859 -118555997 + MIRb SINE MIR 135 232 -36 8 610 1021 75 95 0 chr11 3288317 3288431 -118555425 + B2_Mm2 SINE B2 27 140 -55 8 610 357 24 0 0 chr11 3288431 3288473 -118555383 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 610 1021 75 95 0 chr11 3288473 3288505 -118555351 + B2_Mm2 SINE B2 141 186 -9 8 610 332 94 19 0 chr11 3288505 3288558 -118555298 + (GGA)n Simple_repeat Simple_repeat 1 54 0 8 610 234 312 108 67 chr11 3288588 3288708 -118555148 + PB1 SINE Alu 1 125 -2 8 610 344 182 28 70 chr11 3288729 3288800 -118555056 + ID4 SINE ID 15 82 -1 8 610 840 216 51 28 chr11 3288925 3289139 -118554717 + ID_B1 SINE B4 2 220 -4 8 610 1551 42 15 20 chr11 3289146 3289341 -118554515 + B2_Mm2 SINE B2 2 195 0 8 610 996 116 7 27 chr11 3289565 3289715 -118554141 + B1_Mus1 SINE Alu 1 147 -1 8 610 570 220 11 6 chr11 3289719 3289897 -118553959 + GA-rich Low_complexity Low_complexity 2 180 0 8 610 324 103 0 33 chr11 3290553 3290613 -118553243 - B1_Mm SINE Alu -43 104 47 8 610 588 86 229 0 chr11 3290724 3290829 -118553027 - B1_Mus1 SINE Alu 0 148 20 8 610 195 42 0 0 chr11 3290829 3290853 -118553003 + (CAG)n Simple_repeat Simple_repeat 3 26 0 8 610 414 291 27 0 chr11 3290869 3290979 -118552877 - PB1D10 SINE Alu 0 117 5 8 610 293 157 0 0 chr11 3291194 3291245 -118552611 + B1_Mur3 SINE Alu 81 131 -18 8 610 942 89 0 15 chr11 3291566 3291702 -118552154 + B1_Mus2 SINE Alu 14 147 0 8 610 453 271 53 30 chr11 3292181 3292314 -118551542 - RSINE1 SINE B4 -1 164 29 8 610 896 129 7 7 chr11 3292318 3292459 -118551397 + B1_Mur3 SINE Alu 2 142 -7 8 610 408 254 159 0 chr11 3293249 3293375 -118550481 + RSINE1 SINE B4 2 147 -18 8 610 201 121 0 0 chr11 3294280 3294313 -118549543 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 610 243 304 45 53 chr11 3294943 3295075 -118548781 - B1_Mur1 SINE Alu -6 143 13 8 610 707 230 0 0 chr11 3295137 3295272 -118548584 - B1_Mur1 SINE Alu -2 147 13 8 610 21 0 0 0 chr11 3295278 3295299 -118548557 + AT_rich Low_complexity Low_complexity 1 21 0 8 610 320 111 0 18 chr11 3295480 3295535 -118548321 + (TATG)n Simple_repeat Simple_repeat 1 54 0 8 610 297 260 27 27 chr11 3295539 3295614 -118548242 - ID4 SINE ID -3 80 6 8 610 460 188 35 0 chr11 3295699 3295784 -118548072 - RSINE1 SINE B4 -14 151 64 8 610 492 158 0 0 chr11 3295841 3295923 -118547933 + B3A SINE B2 65 146 -52 8 610 469 247 0 0 chr11 3296028 3296117 -118547739 - ID_B1 SINE B4 -8 216 128 8 610 180 303 154 26 chr11 3296436 3296514 -118547342 + L2 LINE L2 2854 2941 -478 8 610 342 345 35 75 chr11 3297214 3297314 -118546542 + ID_B1 SINE B4 1 102 -122 8 610 345 82 0 0 chr11 3297314 3297363 -118546493 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 610 342 345 35 75 chr11 3297363 3297488 -118546368 + ID_B1 SINE B4 103 217 -7 8 610 240 200 18 0 chr11 3298140 3298195 -118545661 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 610 651 219 138 5 chr11 3298693 3298881 -118544975 - B3 SINE B2 -3 213 1 8 610 548 119 12 0 chr11 3298898 3298982 -118544874 + B3 SINE B2 1 85 -131 8 610 248 232 54 0 chr11 3299003 3299059 -118544797 - B1_Mus2 SINE Alu -42 105 47 8 610 222 91 18 35 chr11 3299196 3299253 -118544603 + (TTTTTG)n Simple_repeat Simple_repeat 4 59 0 8 610 1227 20 0 39 chr11 3299254 3299407 -118544449 - B1_Mus1 SINE Alu -1 147 1 8 610 1276 86 42 31 chr11 3299412 3299605 -118544251 - B2_Mm2 SINE B2 0 195 1 8 610 419 252 9 55 chr11 3299722 3299831 -118544025 - PB1D10 SINE Alu -1 116 13 8 610 246 232 55 136 chr11 3299743 3299853 -118544003 - MT2B2 LTR ERVL -328 256 156 8 610 1017 130 0 0 chr11 3300262 3300424 -118543432 + (GAA)n Simple_repeat Simple_repeat 1 162 0 8 610 584 244 102 18 chr11 3300959 3301126 -118542730 + B3A SINE B2 2 182 -16 8 610 259 114 0 83 chr11 3301152 3301200 -118542656 - B3 SINE B2 -6 210 167 8 610 433 238 159 57 chr11 3301213 3301446 -118542410 + RLTR12B LTR ERVK 1 261 -267 8 610 339 257 50 110 chr11 3301457 3301606 -118542250 + RLTR12B LTR ERVK 359 500 -27 8 610 716 226 8 0 chr11 3301656 3301789 -118542067 - B3 SINE B2 -81 135 2 8 610 664 252 6 58 chr11 3301811 3301967 -118541889 + RSINE1 SINE B4 3 150 -15 8 610 538 206 235 8 chr11 3302017 3302149 -118541707 + B3 SINE B2 2 163 -53 8 610 185 0 40 0 chr11 3302151 3302176 -118541680 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 610 227 279 100 12 chr11 3302191 3302271 -118541585 + MIRc SINE MIR 47 133 -135 8 610 260 202 230 35 chr11 3302299 3302386 -118541470 - PB1D10 SINE Alu -1 116 13 8 610 891 236 28 14 chr11 3302427 3302638 -118541218 - B3 SINE B2 0 216 3 8 610 662 134 124 16 chr11 3302655 3302784 -118541072 - B1_Mur2 SINE Alu 0 149 7 8 610 235 238 133 119 chr11 3302657 3302800 -118541056 - B4 SINE B4 -69 223 79 8 610 894 130 65 0 chr11 3303416 3303554 -118540302 - B1_Mur3 SINE Alu -2 147 1 8 610 570 258 38 84 chr11 3304119 3304199 -118539657 - CYRA11_Mm Unknown Y-chromosome -231 386 192 8 610 930 144 7 0 chr11 3304199 3304345 -118539511 + URR1A DNA MER1_type 80 226 0 8 610 570 258 38 84 chr11 3304345 3304356 -118539500 - CYRA11_Mm Unknown Y-chromosome -231 191 161 8 610 216 0 0 0 chr11 3304844 3304868 -118538988 + (T)n Simple_repeat Simple_repeat 1 24 0 8 610 529 239 35 42 chr11 3304969 3305113 -118538743 - B1_Mur3 SINE Alu 0 149 7 8 610 287 306 0 0 chr11 3305058 3305120 -118538736 - B4A SINE B4 -146 146 85 8 610 810 40 0 0 chr11 3305141 3305242 -118538614 - B1_Mus2 SINE Alu 0 147 47 8 610 315 194 72 29 chr11 3305184 3305253 -118538603 - RLTR25B LTR ERVK -519 509 438 8 610 1596 31 0 45 chr11 3305254 3305455 -118538401 - B2_Mm1a SINE B2 0 193 2 8 610 219 308 118 55 chr11 3305746 3305856 -118538000 - B1_Mus2 SINE Alu -30 117 1 8 610 646 241 151 0 chr11 3305856 3305925 -118537931 - B4A SINE B4 -196 96 3 8 610 336 302 8 58 chr11 3305989 3306207 -118537649 + MIR3 SINE MIR 50 252 -10 8 610 353 267 70 0 chr11 3306495 3306581 -118537275 + BC1_Mm scRNA scRNA 2 93 -59 8 610 219 333 70 70 chr11 3306581 3306595 -118537261 + B4 SINE B4 2 101 -191 8 610 256 260 85 61 chr11 3306618 3306700 -118537156 + PB1 SINE Alu 40 123 -4 8 610 261 119 0 0 chr11 3306702 3306744 -118537112 + (TAA)n Simple_repeat Simple_repeat 3 44 0 8 610 1366 88 39 0 chr11 3306753 3306935 -118536921 + B2_Mm2 SINE B2 2 190 -5 8 610 530 253 69 57 chr11 3306954 3307113 -118536743 + B3 SINE B2 39 199 -17 8 610 384 208 14 0 chr11 3307169 3307241 -118536615 + ID2 SINE ID 5 77 -6 8 610 405 221 115 0 chr11 3307337 3307441 -118536415 + PB1D9 SINE Alu 2 117 -3 8 610 433 212 172 53 chr11 3307524 3307693 -118536163 - B3A SINE B2 -9 189 1 8 610 645 195 194 6 chr11 3307722 3307887 -118535969 - ID_B1 SINE B4 -21 203 8 8 610 328 205 39 132 chr11 3307909 3308038 -118535818 - PB1D7 SINE Alu -2 118 2 8 610 195 174 41 61 chr11 3309456 3309505 -118534351 - MIR SINE MIR -137 71 24 8 610 395 254 48 16 chr11 3309602 3309726 -118534130 - MER2 DNA MER2_type -8 337 210 8 610 418 214 11 22 chr11 3309728 3309819 -118534037 - PB1D10 SINE Alu 0 117 28 8 610 1103 75 14 0 chr11 3309921 3310067 -118533789 + B1_Mus1 SINE Alu 1 148 0 8 610 1172 152 0 0 chr11 3310077 3310261 -118533595 + ORR1B1 LTR MaLR 211 394 0 8 610 1338 94 6 6 chr11 3310868 3311050 -118532806 - B2_Mm2 SINE B2 -9 186 5 8 610 236 316 50 58 chr11 3311083 3311204 -118532652 - PB1D9 SINE Alu 0 120 1 8 610 750 332 53 40 chr11 3311230 3311534 -118532322 + MLT1A LTR MaLR 4 311 -63 8 610 302 316 9 95 chr11 3311840 3311945 -118531911 + AluG_3 SINE Alu 146 221 -90 8 610 393 201 12 101 chr11 3312793 3312937 -118530919 + B3A SINE B2 3 198 0 8 610 408 261 68 55 chr11 3312953 3313099 -118530757 - MER3 DNA MER1_type -50 159 12 8 610 417 39 0 0 chr11 3313254 3313305 -118530551 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 8 610 342 0 0 0 chr11 3313310 3313348 -118530508 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 8 610 304 86 414 0 chr11 3313349 3313407 -118530449 - B2_Mm2 SINE B2 -35 160 79 9 610 1009 105 138 17 chr11 3313427 3313456 -118530400 - B2_Mm2 SINE B2 0 195 168 9 610 324 0 0 0 chr11 3313456 3313492 -118530364 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 610 1009 105 138 17 chr11 3313492 3313636 -118530220 - B2_Mm2 SINE B2 -28 167 1 9 610 776 182 15 0 chr11 3313781 3313918 -118529938 - B1_Mm SINE Alu -6 141 3 9 610 523 202 9 55 chr11 3314076 3314172 -118529684 + B3 SINE B2 108 202 -14 9 610 1908 167 55 19 chr11 3314172 3314533 -118529323 + ORR1D1 LTR MaLR 1 374 0 9 610 523 202 9 55 chr11 3314533 3314546 -118529310 + B3 SINE B2 203 212 -4 9 610 736 233 145 0 chr11 3314605 3314777 -118529079 + B3 SINE B2 1 197 -19 9 610 503 216 178 7 chr11 3315043 3315178 -118528678 - B4A SINE B4 -134 158 1 9 610 494 309 115 5 chr11 3315384 3315576 -118528280 - B3 SINE B2 -3 213 1 9 610 476 277 34 0 chr11 3315626 3315745 -118528111 - RSINE1 SINE B4 -17 148 26 9 610 1135 75 7 0 chr11 3318429 3318575 -118525281 - B1_Mus2 SINE Alu 0 147 1 9 610 198 0 0 0 chr11 3319533 3319555 -118524301 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 610 1104 68 0 7 chr11 3320579 3320726 -118523130 + B1_Mus2 SINE Alu 2 147 0 9 610 201 128 51 0 chr11 3320924 3320963 -118522893 + A-rich Low_complexity Low_complexity 1 41 0 9 610 207 195 0 24 chr11 3321071 3321113 -118522743 + GA-rich Low_complexity Low_complexity 1 41 0 9 610 1372 72 56 0 chr11 3321145 3321305 -118522551 + B2_Mm1t SINE B2 1 160 -33 9 610 279 0 0 0 chr11 3321305 3321336 -118522520 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 9 610 1372 72 56 0 chr11 3321336 3321355 -118522501 + B2_Mm1t SINE B2 161 189 -4 9 610 482 210 0 0 chr11 3321538 3321619 -118522237 - PB1D10 SINE Alu -14 103 23 9 610 220 365 65 0 chr11 3321542 3321649 -118522207 - B4A SINE B4 -101 191 78 9 610 484 308 32 6 chr11 3321751 3321908 -118521948 - RSINE1 SINE B4 -4 161 1 9 610 260 158 0 0 chr11 3322023 3322061 -118521795 + B1_Mus2 SINE Alu 1 38 -109 9 610 557 14 14 0 chr11 3322235 3322305 -118521551 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 9 610 936 151 14 7 chr11 3322646 3322793 -118521063 - B1_Mur4 SINE Alu -1 149 2 9 610 262 258 196 49 chr11 3322933 3323035 -118520821 + PB1D10 SINE Alu 1 117 0 9 610 639 224 108 11 chr11 3323039 3323215 -118520641 + B3A SINE B2 2 194 -4 9 610 458 279 20 64 chr11 3323376 3323579 -118520277 + B3A SINE B2 4 197 -1 9 610 28 48 0 0 chr11 3323649 3323691 -118520165 + AT_rich Low_complexity Low_complexity 1 42 0 9 610 1324 150 12 64 chr11 3323733 3323762 -118520094 + ORR1D1 LTR MaLR 2 30 -344 9 610 1461 59 27 0 chr11 3323762 3323949 -118519907 + B2_Mm1t SINE B2 2 193 0 9 610 1324 161 23 80 chr11 3323949 3324210 -118519646 + ORR1D1 LTR MaLR 31 237 -137 9 610 256 138 138 0 chr11 3324245 3324303 -118519553 + L1M5 LINE L1 5601 5666 -458 9 610 447 232 0 174 chr11 3324649 3324821 -118519035 + B1F SINE Alu 1 142 -7 9 610 339 283 50 0 chr11 3324855 3324954 -118518902 + RSINE1 SINE B4 27 130 -35 9 610 22 35 0 0 chr11 3324978 3325007 -118518849 + AT_rich Low_complexity Low_complexity 1 29 0 9 610 314 275 25 107 chr11 3325029 3325188 -118518668 + L1ME4a LINE L1 5931 6076 -48 9 610 369 275 147 11 chr11 3327104 3327247 -118516609 - B3A SINE B2 -27 171 1 9 610 256 360 26 9 chr11 3327404 3327519 -118516337 - PB1D10 SINE Alu 0 117 1 9 610 237 33 0 0 chr11 3328216 3328246 -118515610 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 610 806 265 94 10 chr11 3328410 3328612 -118515244 + ID_B1 SINE B4 6 224 0 9 610 189 291 73 0 chr11 3328658 3328713 -118515143 - MIRc SINE MIR -158 110 52 9 610 653 248 7 13 chr11 3329061 3329212 -118514644 + ID_B1 SINE B4 75 224 0 9 610 360 0 0 0 chr11 3329305 3329345 -118514511 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 9 610 366 274 23 150 chr11 3329736 3329823 -118514033 - PB1D10 SINE Alu -1 116 46 9 610 954 210 64 15 chr11 3329823 3330026 -118513830 - B3 SINE B2 0 216 4 9 610 366 274 23 150 chr11 3330026 3330071 -118513785 - PB1D10 SINE Alu -72 45 1 9 610 1068 90 21 0 chr11 3330345 3330490 -118513366 + B1_Mus1 SINE Alu 1 148 0 9 610 215 94 15 59 chr11 3330492 3330560 -118513296 + A-rich Low_complexity Low_complexity 2 66 0 9 610 321 135 0 0 chr11 3330638 3330690 -118513166 + (T)n Simple_repeat Simple_repeat 1 52 0 9 610 865 48 0 0 chr11 3330692 3330797 -118513059 - B1_Mus2 SINE Alu -1 146 42 9 610 257 188 112 56 chr11 3330734 3330841 -118513015 - RLTR25B LTR ERVK -519 509 397 9 610 393 119 0 33 chr11 3330837 3330898 -118512958 - B1_Mur4 SINE Alu -90 60 2 9 610 330 214 118 12 chr11 3330898 3330920 -118512936 - ID_B1 SINE B4 -77 145 54 9 610 376 181 22 67 chr11 3331079 3331168 -118512688 + PB1D10 SINE Alu 32 116 -1 9 610 336 242 31 31 chr11 3331994 3332092 -118511764 - MIR SINE MIR -163 99 2 9 610 229 294 95 32 chr11 3332167 3332262 -118511594 - MIR SINE MIR -73 135 35 9 610 1228 21 14 7 chr11 3332981 3333127 -118510729 - B1_Mus1 SINE Alu 0 148 2 9 610 306 0 0 0 chr11 3334144 3334178 -118509678 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 610 232 301 144 41 chr11 3334386 3334483 -118509373 + B4 SINE B4 186 292 0 9 610 413 308 0 21 chr11 3334547 3334640 -118509216 + B4A SINE B4 3 93 -199 9 610 459 241 44 18 chr11 3334597 3334711 -118509145 - B1_Mur2 SINE Alu -28 121 5 9 610 665 279 23 124 chr11 3334863 3334988 -118508868 + ID_B1 SINE B4 7 122 -102 9 610 1114 95 0 0 chr11 3334988 3335135 -118508721 + B1_Mus1 SINE Alu 2 148 0 9 610 665 279 23 124 chr11 3335135 3335226 -118508630 + ID_B1 SINE B4 123 201 -23 9 610 258 303 53 105 chr11 3335945 3335991 -118507865 - B4A SINE B4 -80 212 87 9 610 401 253 23 0 chr11 3335991 3336078 -118507778 - PB1 SINE Alu -37 90 2 9 610 1350 95 11 0 chr11 3336083 3336273 -118507583 - B2_Mm1t SINE B2 0 193 2 9 610 287 240 57 37 chr11 3336334 3336428 -118507428 - MIRc SINE MIR -54 154 65 9 610 587 211 9 13 chr11 3336429 3336565 -118507291 - B3 SINE B2 -57 138 1 9 610 715 154 287 6 chr11 3336585 3336742 -118507114 - B3 SINE B2 -5 211 11 9 610 204 118 29 0 chr11 3337090 3337124 -118506732 + (CAA)n Simple_repeat Simple_repeat 1 35 0 9 610 704 180 39 8 chr11 3337162 3337291 -118506565 + MTC LTR MaLR 3 135 -286 9 610 551 186 55 24 chr11 3337282 3337409 -118506447 + MTC LTR MaLR 289 419 -2 9 610 1101 85 152 0 chr11 3337468 3337632 -118506224 + B2_Mm2 SINE B2 2 190 -5 9 610 422 227 8 120 chr11 3338574 3338656 -118505200 - PB1D9 SINE Alu 0 120 48 9 610 216 0 0 0 chr11 3338656 3338680 -118505176 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 610 1142 29 22 0 chr11 3338680 3338816 -118505040 - B1_Mus1 SINE Alu -9 139 1 9 610 422 227 8 120 chr11 3338816 3338857 -118504999 - PB1D9 SINE Alu -73 47 11 9 610 1132 295 25 18 chr11 3338904 3339187 -118504669 + B4 SINE B4 5 289 -3 9 610 228 276 68 136 chr11 3339250 3339338 -118504518 - ID4 SINE ID 0 83 2 9 610 791 177 234 0 chr11 3339470 3339645 -118504211 + B3 SINE B2 1 216 0 9 610 222 333 138 9 chr11 3339675 3339784 -118504072 + B1_Mm SINE Alu 6 128 -19 9 610 484 268 74 47 chr11 3339764 3339913 -118503943 + ID_B1 SINE B4 69 221 -3 9 610 602 230 168 38 chr11 3340046 3340231 -118503625 + B3 SINE B2 4 212 -4 9 610 589 218 0 10 chr11 3340244 3340346 -118503510 - PB1D9 SINE Alu -12 108 8 9 610 623 315 0 0 chr11 3340387 3340549 -118503307 - RSINE1 SINE B4 0 165 4 9 610 462 277 154 14 chr11 3340643 3340786 -118503070 - RSINE1 SINE B4 0 165 3 9 610 1396 96 37 0 chr11 3340835 3341022 -118502834 - B2_Mm2 SINE B2 -1 194 1 9 610 1368 95 5 0 chr11 3341120 3341310 -118502546 - B2_Mm1a SINE B2 -2 191 1 9 610 480 153 222 51 chr11 3341316 3341433 -118502423 - B1_Mur1 SINE Alu -1 148 12 9 610 234 0 0 0 chr11 3341462 3341488 -118502368 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 610 354 55 88 35 chr11 3341515 3341572 -118502284 + MTD LTR MaLR 3 62 -357 9 610 1655 87 118 4 chr11 3341562 3341816 -118502040 - ORR1A2 LTR MaLR -44 283 1 9 610 1512 157 163 3 chr11 3341816 3342102 -118501754 + MTD LTR MaLR 87 419 0 9 610 1107 220 14 0 chr11 3342119 3342328 -118501528 - B3 SINE B2 -4 212 1 9 610 1309 93 22 0 chr11 3342445 3342628 -118501228 - B2_Mm2 SINE B2 -7 188 2 9 610 227 266 228 0 chr11 3342674 3342753 -118501103 + MIR SINE MIR 48 144 -118 9 610 309 250 54 109 chr11 3343060 3343244 -118500612 - MIRb SINE MIR -43 225 52 9 610 257 243 56 14 chr11 3343541 3343612 -118500244 - ID4_ SINE ID -9 74 1 9 610 1175 102 0 6 chr11 3344001 3344179 -118499677 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 9 610 538 271 58 6 chr11 3344624 3344780 -118499076 + B4 SINE B4 123 286 -6 9 610 191 358 62 21 chr11 3344915 3345012 -118498844 - L2c LINE L2 -7 3380 3280 9 610 315 313 36 12 chr11 3345556 3345640 -118498216 + ID_B1 SINE B4 38 123 -101 9 610 1087 108 0 7 chr11 3345839 3345988 -118497868 + B1_Mus1 SINE Alu 1 148 0 9 610 206 61 82 0 chr11 3346078 3346127 -118497729 + (TA)n Simple_repeat Simple_repeat 1 53 0 9 610 373 264 172 59 chr11 3346166 3346292 -118497564 + B3A SINE B2 2 148 -45 9 610 423 0 0 0 chr11 3346292 3346339 -118497517 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 610 249 264 172 59 chr11 3346339 3346381 -118497475 + B2_Mm1a SINE B2 149 189 -4 9 610 498 179 84 9 chr11 3346384 3346491 -118497365 + PB1D10 SINE Alu 2 116 -1 1 610 535 269 0 0 chr11 3346687 3346795 -118497061 + PB1 SINE Alu 13 120 -7 1 610 227 309 145 61 chr11 3346795 3346815 -118497041 + B4A SINE B4 98 236 -56 1 610 388 326 12 93 chr11 3346856 3347018 -118496838 + B4A SINE B4 2 150 -142 1 610 282 281 18 0 chr11 3347028 3347085 -118496771 + ID_B1 SINE B4 66 123 -101 1 610 339 169 85 0 chr11 3347235 3347294 -118496562 + RSINE1 SINE B4 87 150 -15 1 610 207 114 0 0 chr11 3347303 3347338 -118496518 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 610 876 130 0 55 chr11 3347516 3347662 -118496194 + B1_Mur4 SINE Alu 1 138 -12 1 610 580 276 32 6 chr11 3348192 3348349 -118495507 + RSINE1 SINE B4 1 161 -4 1 610 268 203 101 23 chr11 3348379 3348477 -118495379 + L1M4 LINE L1 5357 5459 -900 1 610 805 157 67 0 chr11 3348514 3348648 -118495208 - B1_Mus1 SINE Alu 0 148 6 1 610 250 228 55 132 chr11 3348575 3348666 -118495190 - MT2B LTR ERVL -362 239 156 1 610 766 269 94 38 chr11 3348699 3348966 -118494890 + B4A SINE B4 3 284 -8 1 610 257 352 22 33 chr11 3348978 3348992 -118494864 + MT2B2 LTR ERVL 151 163 -421 1 610 298 308 116 13 chr11 3348992 3349082 -118494774 + B1F1 SINE Alu 1 99 -21 1 610 294 262 0 15 chr11 3349128 3349194 -118494662 - MER58C DNA MER1_type -139 76 12 1 610 578 273 15 22 chr11 3349237 3349363 -118494493 + B1_Mur4 SINE Alu 16 140 -10 1 610 342 0 0 0 chr11 3349363 3349401 -118494455 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 610 337 188 75 94 chr11 3349450 3349556 -118494300 + PB1D10 SINE Alu 14 117 0 1 610 1176 42 7 14 chr11 3349692 3349837 -118494019 + B1_Mus2 SINE Alu 2 145 -2 1 610 418 203 40 0 chr11 3350547 3350621 -118493235 + PB1D10 SINE Alu 25 101 -16 1 610 306 235 0 23 chr11 3350623 3350710 -118493146 + GA-rich Low_complexity Low_complexity 2 86 0 1 610 22 35 0 0 chr11 3350819 3350848 -118493008 + AT_rich Low_complexity Low_complexity 1 29 0 1 610 301 266 118 52 chr11 3351049 3351184 -118492672 + B1F1 SINE Alu 6 149 0 1 610 360 259 61 26 chr11 3351072 3351187 -118492669 + ID_B1 SINE B4 106 224 0 1 610 196 361 12 55 chr11 3351296 3351460 -118492396 - L3 LINE CR1 -151 4338 4182 1 610 309 246 51 121 chr11 3351793 3351950 -118491906 - MIRc SINE MIR -119 149 4 1 610 765 185 169 22 chr11 3352723 3353032 -118490824 - RMER17C LTR ERVK -475 483 1 1 610 259 162 95 0 chr11 3353034 3353108 -118490748 + L1MC4 LINE L1 6954 7034 -1008 1 610 579 263 43 7 chr11 3353108 3353246 -118490610 + RSINE1 SINE B4 2 144 -21 1 610 21 0 0 0 chr11 3353334 3353355 -118490501 + AT_rich Low_complexity Low_complexity 1 21 0 1 610 379 248 20 78 chr11 3353991 3354144 -118489712 + B4A SINE B4 78 221 -71 1 610 941 101 14 0 chr11 3354012 3354150 -118489706 + B1_Mur3 SINE Alu 10 149 0 1 610 239 173 19 0 chr11 3354167 3354219 -118489637 + GA-rich Low_complexity Low_complexity 2 54 0 1 610 789 229 68 19 chr11 3354226 3354431 -118489425 + B3 SINE B2 2 216 0 1 610 955 67 82 0 chr11 3354979 3355113 -118488743 - B2_Mm1a SINE B2 -1 192 48 1 610 292 333 40 24 chr11 3355883 3356009 -118487847 + RLTR33 LTR ERVK 516 643 -35 1 610 624 27 0 0 chr11 3356154 3356228 -118487628 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 610 862 169 0 0 chr11 3356288 3356424 -118487432 + B1_Mus1 SINE Alu 13 148 0 1 610 738 226 48 16 chr11 3356481 3356670 -118487186 - B3 SINE B2 -18 198 4 1 610 280 232 14 14 chr11 3356901 3356971 -118486885 + B4 SINE B4 97 166 -126 1 610 437 302 17 8 chr11 3357002 3357119 -118486737 + RSINE1 SINE B4 3 120 -45 1 610 988 104 0 27 chr11 3357119 3357267 -118486589 + B1_Mur4 SINE Alu 1 144 -6 1 610 418 203 86 0 chr11 3357394 3357490 -118486366 + PB1D10 SINE Alu 1 109 -8 1 610 1129 224 9 0 chr11 3357483 3357693 -118486163 + B3 SINE B2 5 216 0 1 610 356 260 57 29 chr11 3357798 3358009 -118485847 + L1MC4 LINE L1 7229 7467 -575 1 610 431 227 42 77 chr11 3358544 3358650 -118485206 + RLTR14 LTR ERV1 6 111 -271 1 610 982 178 103 10 chr11 3358650 3358854 -118485002 + URR1B DNA MER1_type 3 225 0 1 610 431 227 42 77 chr11 3358854 3358890 -118484966 + RLTR14 LTR ERV1 112 143 -239 1 610 229 283 0 0 chr11 3358892 3358945 -118484911 + Lx8 LINE L1 6729 6781 -692 1 610 207 100 0 0 chr11 3358962 3358992 -118484864 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 610 477 0 0 0 chr11 3359013 3359066 -118484790 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 610 2777 111 68 57 chr11 3359066 3359562 -118484294 + RLTR14-int LTR ERV1 422 923 -4394 1 610 268 188 91 30 chr11 3359616 3359682 -118484174 + RLTR14-int LTR ERV1 930 999 -4318 1 610 1030 108 0 39 chr11 3359716 3359870 -118483986 - B1_Mus1 SINE Alu 0 148 1 1 610 312 27 0 0 chr11 3359879 3359916 -118483940 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 1 610 1100 79 0 0 chr11 3359916 3360055 -118483801 - B1_Mus1 SINE Alu -8 140 2 1 610 3248 139 69 61 chr11 3360056 3360677 -118483179 + RLTR14-int LTR ERV1 989 1614 -3703 1 610 427 121 0 0 chr11 3360690 3360748 -118483108 - B1_Mus2 SINE Alu -25 122 65 1 610 695 130 0 0 chr11 3360764 3360864 -118482992 + B1_Mus1 SINE Alu 29 128 -20 1 610 14258 144 98 66 chr11 3360869 3362929 -118480927 + RLTR14-int LTR ERV1 2211 4398 -919 1 610 255 277 37 56 chr11 3362929 3362947 -118480909 + ID_B1 SINE B4 119 223 -1 1 610 407 111 14 23 chr11 3362947 3363036 -118480820 + B1_Mur4 SINE Alu 34 149 -1 1 610 14258 144 98 66 chr11 3363036 3363288 -118480568 + RLTR14-int LTR ERV1 4399 4667 -650 1 610 378 0 0 0 chr11 3363288 3363330 -118480526 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 610 14258 144 98 66 chr11 3363330 3363922 -118479934 + RLTR14-int LTR ERV1 4668 5317 0 1 610 1445 136 149 79 chr11 3363922 3364033 -118479823 + RLTR14 LTR ERV1 1 134 -248 1 610 246 32 0 0 chr11 3364033 3364064 -118479792 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 610 1042 97 0 14 chr11 3364064 3364211 -118479645 - B1_Mus1 SINE Alu -2 146 2 1 610 1445 136 149 79 chr11 3364211 3364426 -118479430 + RLTR14 LTR ERV1 135 350 -32 1 610 239 273 15 0 chr11 3364431 3364497 -118479359 + Lx8 LINE L1 6808 6874 -599 1 610 247 304 112 56 chr11 3364502 3364528 -118479328 - ID_B1 SINE B4 -73 151 1 1 610 846 137 0 0 chr11 3364528 3364645 -118479211 - B3 SINE B2 -99 117 1 1 610 297 0 0 0 chr11 3364710 3364743 -118479113 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 610 268 233 0 4 chr11 3364770 3364828 -118479028 - ID4_ SINE ID -87 65 10 1 610 2569 20 23 7 chr11 3364844 3365152 -118478704 + L1Md_F3 LINE L1 6272 6584 0 1 610 800 200 0 0 chr11 3365166 3365306 -118478550 + B1_Mur2 SINE Alu 5 144 -5 1 610 556 226 247 19 chr11 3365501 3365659 -118478197 + B3A SINE B2 4 197 -1 1 610 198 0 0 0 chr11 3365971 3365993 -118477863 + (T)n Simple_repeat Simple_repeat 1 22 0 1 610 411 21 0 0 chr11 3366932 3366980 -118476876 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 610 609 159 127 0 chr11 3367480 3367606 -118476250 + RLTR14-int LTR ERV1 1036 1177 -4140 1 610 315 282 136 52 chr11 3367696 3368047 -118475809 + RLTR14-int LTR ERV1 1812 2335 -5443 1 610 1210 68 0 0 chr11 3368066 3368212 -118475644 - B1_Mus1 SINE Alu 0 148 3 1 610 535 205 0 93 chr11 3368222 3368351 -118475505 + RLTR14-int LTR ERV1 1169 1285 -4032 1 610 1110 222 0 38 chr11 3368442 3368759 -118475097 + RLTR14-int LTR ERV1 1295 1514 -3803 1 610 267 54 0 0 chr11 3368862 3368899 -118474957 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 1 610 1870 249 56 61 chr11 3369293 3369920 -118473936 + RLTR14-int LTR ERV1 1602 2124 -3193 1 610 3248 48 5 8 chr11 3369920 3370317 -118473539 + MTA_Mm LTR MaLR 1 396 0 1 610 1299 217 31 71 chr11 3370317 3370550 -118473306 + RLTR14-int LTR ERV1 2125 2345 -2972 1 610 593 207 28 46 chr11 3370550 3370779 -118473077 - ORR1C1-int LTR MaLR -673 907 572 1 610 195 42 0 0 chr11 3370798 3370822 -118473034 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 610 476 232 30 0 chr11 3371527 3371626 -118472230 - ORR1C1-int LTR MaLR -1261 109 8 1 610 730 151 42 0 chr11 3371630 3371749 -118472107 - ORR1C1 LTR MaLR 0 378 255 1 610 482 234 70 35 chr11 3371749 3371832 -118472024 + RMER17C LTR ERVK 1 82 -328 1 610 1194 7 0 0 chr11 3371832 3371967 -118471889 + (TCTCCC)n Simple_repeat Simple_repeat 5 139 0 1 610 482 234 70 35 chr11 3371967 3372082 -118471774 + RMER17C LTR ERVK 83 206 -204 1 610 420 216 166 20 chr11 3372315 3372466 -118471390 - MER53 DNA hAT -1 192 20 1 610 328 247 80 34 chr11 3372463 3372551 -118471305 - PB1 SINE Alu -4 123 32 1 610 415 313 44 15 chr11 3372979 3373115 -118470741 + ID_B1 SINE B4 84 223 -1 1 610 224 114 0 43 chr11 3373135 3373181 -118470675 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 1 610 382 234 0 0 chr11 3373344 3373421 -118470435 - ID_B1 SINE B4 0 224 148 1 610 305 273 55 55 chr11 3373421 3373471 -118470385 - B1_Mur2 SINE Alu -1 147 21 1 610 512 252 75 33 chr11 3373457 3373670 -118470186 + Charlie5 DNA MER1_type 2403 2624 0 1 610 261 159 214 14 chr11 3373682 3373752 -118470104 - PB1D7 SINE Alu 0 120 37 1 610 195 69 0 0 chr11 3374036 3374065 -118469791 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1 610 1163 196 0 0 chr11 3374068 3374262 -118469594 - B3 SINE B2 -21 195 2 1 610 1698 26 0 0 chr11 3374433 3374625 -118469231 - B2_Mm1t SINE B2 0 193 2 1 610 213 220 51 0 chr11 3374723 3374782 -118469074 - B1F2 SINE Alu -79 70 9 1 610 25 75 0 0 chr11 3374796 3374849 -118469007 + AT_rich Low_complexity Low_complexity 1 53 0 1 610 643 243 45 34 chr11 3374859 3375038 -118468818 - B3A SINE B2 -16 182 2 1 610 696 237 38 25 chr11 3375061 3375221 -118468635 + RSINE1 SINE B4 3 164 -1 1 610 2020 253 64 4 chr11 3375725 3376241 -118467615 - RMER15 LTR ERVL 0 575 29 1 610 258 141 227 53 chr11 3376411 3376486 -118467370 + MTEa LTR MaLR 271 358 -21 1 610 192 143 0 0 chr11 3376759 3376801 -118467055 + (T)n Simple_repeat Simple_repeat 1 42 0 1 610 1216 48 0 20 chr11 3376801 3376951 -118466905 - B1_Mus2 SINE Alu 0 147 1 1 610 351 263 168 81 chr11 3377094 3377243 -118466613 + RSINE1 SINE B4 4 165 0 1 610 213 159 0 0 chr11 3377823 3377867 -118465989 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 610 918 245 34 96 chr11 3377898 3377974 -118465882 - B4A SINE B4 -10 282 225 1 610 858 216 37 51 chr11 3377974 3378189 -118465667 - B3 SINE B2 -4 212 1 1 610 918 245 34 96 chr11 3378189 3378405 -118465451 - B4A SINE B4 -68 224 8 1 610 21 36 0 0 chr11 3378549 3378577 -118465279 + AT_rich Low_complexity Low_complexity 1 28 0 1 610 1035 158 18 0 chr11 3378609 3378780 -118465076 - B3 SINE B2 -13 203 30 1 610 860 111 7 0 chr11 3378781 3378916 -118464940 + (TCTCC)n Simple_repeat Simple_repeat 5 140 0 1 610 723 104 0 0 chr11 3378916 3379022 -118464834 + (TTCC)n Simple_repeat Simple_repeat 2 107 0 1 610 764 96 17 25 chr11 3379022 3379140 -118464716 - B1_Mur3 SINE Alu 0 149 33 1 610 482 228 16 39 chr11 3379027 3379155 -118464701 - ID_B1 SINE B4 -2 222 98 1 610 224 205 0 0 chr11 3379145 3379184 -118464672 - B3 SINE B2 -176 40 2 1 610 759 181 36 0 chr11 3379853 3379991 -118463865 + B1_Mus2 SINE Alu 3 145 -2 1 610 216 0 0 0 chr11 3379991 3380015 -118463841 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 610 453 36 0 0 chr11 3380115 3380170 -118463686 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 610 210 333 35 0 chr11 3380173 3380230 -118463626 + ID4 SINE ID 18 76 -7 1 610 342 0 0 0 chr11 3380252 3380290 -118463566 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 610 328 268 42 0 chr11 3380312 3380383 -118463473 - MLT1F1 LTR MaLR -83 465 392 1 610 701 265 142 27 chr11 3380397 3380633 -118463223 + L1MB8 LINE L1 5343 5643 -801 1 610 2053 115 105 0 chr11 3380633 3380929 -118462927 - ORR1A2 LTR MaLR 0 327 1 1 610 701 258 185 22 chr11 3380929 3381105 -118462751 + L1MB8 LINE L1 5644 5828 -350 1 610 1204 182 24 0 chr11 3381105 3381314 -118462542 + B3 SINE B2 1 214 -2 1 610 321 251 97 66 chr11 3381314 3381334 -118462522 + Lx5 LINE L1 5794 5813 -1237 1 610 1670 37 0 0 chr11 3381367 3381558 -118462298 - B2_Mm1a SINE B2 -1 192 2 1 610 996 90 0 0 chr11 3381558 3381691 -118462165 + B1_Mus1 SINE Alu 15 147 -1 1 610 230 0 0 32 chr11 3381691 3381722 -118462134 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1 610 397 202 61 0 chr11 3381724 3381823 -118462033 + L1MB8 LINE L1 5816 5920 -258 1 610 469 326 52 37 chr11 3381897 3382088 -118461768 + B3A SINE B2 1 194 -4 1 610 316 340 103 0 chr11 3382564 3382720 -118461136 + L1MB8 LINE L1 5938 6109 -75 1 610 28 29 0 0 chr11 3382720 3382755 -118461101 + AT_rich Low_complexity Low_complexity 1 35 0 1 610 474 216 58 19 chr11 3382756 3382860 -118460996 - PB1D10 SINE Alu -1 116 9 1 610 233 311 79 63 chr11 3382764 3382891 -118460965 - MT2B2 LTR ERVL -321 263 135 1 610 411 21 0 0 chr11 3382931 3382979 -118460877 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 610 1004 95 6 0 chr11 3382990 3383158 -118460698 + (GA)n Simple_repeat Simple_repeat 2 170 0 1 610 680 240 153 23 chr11 3383178 3383481 -118460375 - MLT1F1 LTR MaLR -209 339 1 1 610 547 266 45 26 chr11 3383540 3383731 -118460125 - ID_B1 SINE B4 -3 221 38 1 610 326 333 94 6 chr11 3383933 3384093 -118459763 + LTR16B1 LTR ERVL 56 229 -251 1 610 615 256 30 18 chr11 3384138 3384305 -118459551 + LTR16B1 LTR ERVL 311 479 -1 1 610 255 250 30 45 chr11 3384426 3384493 -118459363 + MIRm SINE MIR 209 274 -2 1 610 445 259 31 46 chr11 3384703 3384834 -118459022 + B1F SINE Alu 20 149 0 1 610 658 136 188 23 chr11 3385287 3385415 -118458441 + B1_Mur3 SINE Alu 1 149 0 1 610 666 25 0 0 chr11 3385419 3385499 -118458357 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 610 1092 61 61 0 chr11 3385571 3385719 -118458137 + B2_Mm2 SINE B2 1 157 -38 1 610 366 42 0 0 chr11 3385722 3385770 -118458086 + (CATA)n Simple_repeat Simple_repeat 2 49 0 1 610 352 281 48 19 chr11 3385836 3385941 -118457915 + PB1D10 SINE Alu 9 116 -1 1 610 222 118 0 0 chr11 3387166 3387200 -118456656 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 610 763 187 65 0 chr11 3387206 3387345 -118456511 - B1_Mur2 SINE Alu -1 148 1 1 610 330 283 0 102 chr11 3387244 3387362 -118456494 - MT2B LTR ERVL -344 257 152 1 610 276 267 138 13 chr11 3388910 3389062 -118454794 + MIRc SINE MIR 53 223 -45 1 610 1290 99 55 0 chr11 3390471 3390653 -118453203 + B2_Mm2 SINE B2 2 193 -2 1 610 352 92 46 0 chr11 3390653 3390718 -118453138 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 1 610 227 263 79 0 chr11 3391442 3391518 -118452338 + ID4 SINE ID 2 83 0 1 610 396 0 0 0 chr11 3391683 3391727 -118452129 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 610 325 260 155 16 chr11 3392550 3392679 -118451177 + B1F1 SINE Alu 1 147 -2 1 610 890 239 31 40 chr11 3393841 3394063 -118449793 - ID_B1 SINE B4 -1 223 4 1 610 204 237 33 17 chr11 3394066 3394126 -118449730 + MIR SINE MIR 137 197 -65 1 610 227 329 161 19 chr11 3394186 3394340 -118449516 + MIR SINE MIR 80 268 0 1 610 182 313 34 0 chr11 3395238 3395318 -118448538 - MIRb SINE MIR -141 127 41 1 610 382 342 0 68 chr11 3395970 3396001 -118447855 + ID_B1 SINE B4 66 217 -7 1 610 437 305 23 8 chr11 3396001 3396133 -118447723 + B1F SINE Alu 9 142 -7 1 610 28 29 0 0 chr11 3396286 3396321 -118447535 + AT_rich Low_complexity Low_complexity 1 35 0 1 610 733 103 0 25 chr11 3396321 3396440 -118447416 + B1_Mur4 SINE Alu 35 150 0 1 610 249 167 0 48 chr11 3396449 3396512 -118447344 - B3 SINE B2 -7 209 150 1 610 249 333 15 89 chr11 3396659 3396794 -118447062 + MIR SINE MIR 43 170 -98 1 610 280 306 25 83 chr11 3397122 3397243 -118446613 + PB1D7 SINE Alu 6 119 -1 1 610 252 0 0 0 chr11 3397437 3397465 -118446391 + (A)n Simple_repeat Simple_repeat 1 28 0 1 610 1466 75 27 0 chr11 3397488 3397676 -118446180 + B2_Mm2 SINE B2 1 193 -2 1 610 447 235 226 15 chr11 3397683 3397840 -118446016 + B3 SINE B2 48 216 0 1 610 523 268 49 0 chr11 3397918 3398060 -118445796 - B1F SINE Alu 0 149 1 1 610 300 275 0 42 chr11 3398071 3398166 -118445690 - PB1D10 SINE Alu 0 117 27 1 610 180 0 0 0 chr11 3398202 3398222 -118445634 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 610 356 256 12 0 chr11 3398231 3398313 -118445543 - ID4_ SINE ID 0 83 1 1 610 264 297 0 15 chr11 3398395 3398460 -118445396 + B4A SINE B4 83 146 -146 1 610 429 248 38 9 chr11 3398405 3398511 -118445345 + PB1D10 SINE Alu 7 115 -2 1 610 775 281 61 20 chr11 3398851 3399098 -118444758 - MER2 DNA MER2_type -2 343 87 1 610 615 285 35 24 chr11 3399123 3399292 -118444564 - B3A SINE B2 -1 197 27 1 610 273 319 81 8 chr11 3399348 3399497 -118444359 + MIRb SINE MIR 17 174 -94 1 610 302 170 257 48 chr11 3404328 3404433 -118439423 - MIR SINE MIR -57 151 25 1 610 439 248 27 62 chr11 3405622 3405768 -118438088 + B1F1 SINE Alu 9 149 0 1 610 622 175 83 0 chr11 3405824 3405944 -118437912 + B3 SINE B2 1 130 -86 1 610 932 88 0 7 chr11 3405981 3406118 -118437738 + (GGA)n Simple_repeat Simple_repeat 1 136 0 1 610 300 27 0 0 chr11 3406154 3406191 -118437665 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1 610 228 306 0 125 chr11 3406209 3406266 -118437590 + B1F SINE Alu 21 66 -83 1 610 832 264 25 15 chr11 3406266 3406462 -118437394 + B3A SINE B2 1 198 0 1 610 228 306 0 125 chr11 3406462 3406516 -118437340 + B1F SINE Alu 67 117 -32 1 610 543 56 0 0 chr11 3406733 3406804 -118437052 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1 610 279 0 0 0 chr11 3406806 3406837 -118437019 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 610 982 251 55 44 chr11 3406886 3407157 -118436699 - B4A SINE B4 -17 275 2 1 611 267 288 211 19 chr11 3408040 3408196 -118435660 + MIR SINE MIR 57 242 -26 1 611 198 259 56 0 chr11 3408209 3408263 -118435593 - MIR3 SINE MIR -45 163 107 1 611 260 228 143 38 chr11 3409171 3409319 -118434537 - MIRb SINE MIR -100 168 1 1 611 285 258 30 0 chr11 3410128 3410194 -118433662 - PB1D10 SINE Alu -9 108 41 1 611 271 270 0 0 chr11 3410144 3410207 -118433649 - 4.5SRNA scRNA scRNA -6 88 26 1 611 359 284 103 34 chr11 3410720 3410866 -118432990 - L1ME4a LINE L1 -49 6075 5920 1 611 486 246 18 18 chr11 3411145 3411257 -118432599 - PB1D9 SINE Alu -8 112 1 1 611 613 247 87 0 chr11 3411300 3411450 -118432406 - RSINE1 SINE B4 0 165 3 1 611 312 271 189 41 chr11 3411456 3411652 -118432204 - B4A SINE B4 -66 226 2 1 611 312 120 0 0 chr11 3411671 3411721 -118432135 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 611 1186 68 0 7 chr11 3411722 3411869 -118431987 - B1_Mus1 SINE Alu -2 146 1 1 611 410 226 108 0 chr11 3411914 3412007 -118431849 - PB1D7 SINE Alu -17 103 1 1 611 218 160 20 0 chr11 3412020 3412070 -118431786 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 611 713 198 111 77 chr11 3412075 3412283 -118431573 - B3 SINE B2 0 216 2 1 611 306 0 0 0 chr11 3412283 3412317 -118431539 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 611 3355 33 8 20 chr11 3412412 3412813 -118431043 + MTA_Mm LTR MaLR 1 396 0 1 611 1050 248 0 10 chr11 3412813 3413017 -118430839 - B3 SINE B2 -14 202 1 1 611 443 327 22 10 chr11 3413018 3413178 -118430678 - B4A SINE B4 -60 164 6 1 611 557 309 13 0 chr11 3413217 3413369 -118430487 - RSINE1 SINE B4 0 165 12 1 611 1050 229 54 27 chr11 3413517 3413813 -118430043 - MER2 DNA MER2_type -9 336 33 1 611 232 218 0 35 chr11 3414065 3414122 -118429734 + B1F SINE Alu 26 80 -69 1 611 27 0 0 0 chr11 3414238 3414265 -118429591 + AT_rich Low_complexity Low_complexity 1 27 0 1 611 480 279 6 105 chr11 3414280 3414452 -118429404 - RSINE1 SINE B4 -1 164 10 1 611 27 0 0 0 chr11 3415652 3415679 -118428177 + AT_rich Low_complexity Low_complexity 1 27 0 1 611 261 313 13 45 chr11 3418773 3418792 -118425064 - B4 SINE B4 -194 98 31 1 611 331 250 0 14 chr11 3418792 3418865 -118424991 - ID2 SINE ID -3 80 9 1 611 381 261 26 18 chr11 3418876 3418989 -118424867 - B1F1 SINE Alu -7 142 29 1 611 353 287 39 10 chr11 3420121 3420223 -118423633 - PB1D10 SINE Alu -1 116 12 1 611 226 291 12 25 chr11 3420921 3421002 -118422854 + G-rich Low_complexity Low_complexity 1 80 0 1 611 280 305 9 19 chr11 3421258 3421365 -118422491 + G-rich Low_complexity Low_complexity 1 106 0 1 611 231 338 66 7 chr11 3423338 3423475 -118420381 + B1F SINE Alu 3 147 -2 1 611 397 211 58 0 chr11 3423439 3423543 -118420313 + BC1_Mm scRNA scRNA 14 123 -29 1 611 272 295 26 0 chr11 3423592 3423670 -118420186 - ID4 SINE ID -1 82 3 1 611 377 261 23 0 chr11 3423713 3423801 -118420055 + PB1D10 SINE Alu 10 99 -18 1 611 243 315 0 14 chr11 3424002 3424076 -118419780 + ID4_ SINE ID 11 83 0 1 611 226 224 43 29 chr11 3426761 3426830 -118417026 - MIRc SINE MIR -108 160 91 1 611 577 263 0 7 chr11 3429074 3429212 -118414644 + ID_B1 SINE B4 84 220 -4 1 611 186 259 224 0 chr11 3429293 3429378 -118414478 + MIRc SINE MIR 61 164 -104 1 611 306 148 0 0 chr11 3432075 3432129 -118411727 + (TGGGGG)n Simple_repeat Simple_repeat 2 55 0 1 611 684 149 0 17 chr11 3433019 3433196 -118410660 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 1 611 779 152 13 27 chr11 3434196 3434345 -118409511 - B1_Mur3 SINE Alu -2 147 1 1 611 332 229 295 19 chr11 3434366 3434522 -118409334 - B3 SINE B2 0 216 18 1 611 217 0 61 0 chr11 3440140 3440173 -118403683 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 611 180 0 0 0 chr11 3440741 3440761 -118403095 + (T)n Simple_repeat Simple_repeat 1 20 0 1 611 222 227 0 0 chr11 3441664 3441708 -118402148 + MIRm SINE MIR 114 157 -119 1 611 351 281 124 38 chr11 3442787 3442972 -118400884 - MIRb SINE MIR -18 250 50 1 611 240 194 91 16 chr11 3443662 3443761 -118400095 - MIR SINE MIR -87 121 13 1 611 305 140 18 0 chr11 3443939 3443996 -118399860 + CT-rich Low_complexity Low_complexity 1 58 0 1 611 1129 162 23 37 chr11 3444525 3444743 -118399113 - B3 SINE B2 -1 215 1 1 611 859 163 13 13 chr11 3445044 3445193 -118398663 - B1_Mur4 SINE Alu -1 149 1 1 611 234 0 0 0 chr11 3445366 3445392 -118398464 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 611 2523 148 17 7 chr11 3446213 3446622 -118397234 + MTC LTR MaLR 1 413 -8 1 611 415 343 113 7 chr11 3446774 3446915 -118396941 + RSINE1 SINE B4 3 158 -7 1 611 244 257 71 0 chr11 3446924 3446994 -118396862 - MER45R DNA Tip100 -1447 134 60 1 611 645 116 42 2 chr11 3446991 3447104 -118396752 + B1_Mur4 SINE Alu 21 138 -12 1 611 207 0 0 0 chr11 3447104 3447127 -118396729 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 611 589 138 35 52 chr11 3447127 3447142 -118396714 + B1_Mus2 SINE Alu 136 147 0 1 611 210 171 0 0 chr11 3447728 3447763 -118396093 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 611 1199 54 0 13 chr11 3447821 3447970 -118395886 + B1_Mus1 SINE Alu 2 148 0 1 611 725 144 235 28 chr11 3448358 3448537 -118395319 + B3 SINE B2 1 216 0 1 611 396 203 26 139 chr11 3448608 3448766 -118395090 - ORR1C2 LTR MaLR -155 219 84 1 611 572 201 293 11 chr11 3448860 3449051 -118394805 - RMER21B LTR ERV1 -275 567 323 1 611 482 88 22 0 chr11 3449083 3449159 -118394697 - ORR1C2 LTR MaLR -312 82 1 1 611 839 116 0 15 chr11 3449394 3449525 -118394331 + B1_Mus1 SINE Alu 2 130 -18 1 611 546 143 93 28 chr11 3449678 3449786 -118394070 - B1_Mur2 SINE Alu 0 149 35 1 611 288 228 53 49 chr11 3449876 3449898 -118393958 + ID SINE ID 72 89 -135 1 611 281 200 135 45 chr11 3449898 3449987 -118393869 + PB1 SINE Alu 1 97 -30 1 611 426 47 58 11 chr11 3450545 3450632 -118393224 + (CAAAA)n Simple_repeat Simple_repeat 5 95 0 1 611 551 253 97 124 chr11 3450659 3450705 -118393151 + B3 SINE B2 2 40 -176 1 611 990 148 0 0 chr11 3450705 3450854 -118393002 - B1_Mur4 SINE Alu 0 150 2 1 611 551 253 97 124 chr11 3450854 3450974 -118392882 + B3 SINE B2 41 165 -51 1 611 432 0 0 0 chr11 3450974 3451022 -118392834 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 611 551 253 97 124 chr11 3451022 3451071 -118392785 + B3 SINE B2 166 211 -5 1 611 314 231 31 0 chr11 3451065 3451130 -118392726 + B3A SINE B2 6 72 -126 1 611 1214 192 5 4 chr11 3451128 3451340 -118392516 + ORR1B1 LTR MaLR 99 349 -45 1 611 1173 75 0 0 chr11 3451340 3451487 -118392369 + B1_Mus1 SINE Alu 2 148 0 1 611 834 203 14 198 chr11 3451487 3451581 -118392275 + ORR1B1 LTR MaLR 284 329 0 1 611 486 0 0 0 chr11 3451973 3452027 -118391829 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 611 411 210 200 8 chr11 3452028 3452148 -118391708 - B1_Mur3 SINE Alu -6 143 1 1 611 393 312 116 5 chr11 3452245 3452435 -118391421 + MER44B DNA MER2_type 78 288 -262 1 611 730 258 135 12 chr11 3452491 3452750 -118391106 - B4 SINE B4 0 292 2 1 611 781 137 16 16 chr11 3452780 3452906 -118390950 - B1_Mur1 SINE Alu 0 149 24 1 611 417 233 17 34 chr11 3452891 3453046 -118390810 + MER44B DNA MER2_type 282 431 -119 1 611 1261 84 84 0 chr11 3453208 3453368 -118390488 + B2_Mm2 SINE B2 2 161 -34 1 611 387 0 0 0 chr11 3453368 3453411 -118390445 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 611 1261 84 84 0 chr11 3453411 3453428 -118390428 + B2_Mm2 SINE B2 162 193 -2 1 611 1220 36 0 0 chr11 3453447 3453586 -118390270 + B1_Mus1 SINE Alu 1 139 -9 1 611 321 26 0 0 chr11 3453586 3453624 -118390232 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 611 315 0 0 0 chr11 3453751 3453786 -118390070 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 611 382 302 31 0 chr11 3453792 3453888 -118389968 - B1_Mur2 SINE Alu -27 122 24 1 611 26 0 0 0 chr11 3454482 3454508 -118389348 + AT_rich Low_complexity Low_complexity 1 26 0 1 611 377 267 86 0 chr11 3454582 3454698 -118389158 - RSINE1 SINE B4 -37 128 3 1 611 492 254 79 0 chr11 3454724 3454850 -118389006 + ID_B1 SINE B4 85 220 -4 1 611 495 0 0 0 chr11 3455466 3455521 -118388335 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 1 611 1155 93 0 0 chr11 3455521 3455672 -118388184 - B2_Mm2 SINE B2 -43 152 2 1 611 1024 219 172 60 chr11 3455679 3455984 -118387872 - ORR1D2 LTR MaLR 0 370 29 1 611 2445 113 55 89 chr11 3455984 3456420 -118387436 - MTC LTR MaLR 0 421 1 1 611 1024 219 172 60 chr11 3456420 3456445 -118387411 - ORR1D2 LTR MaLR -342 28 3 1 611 689 252 66 15 chr11 3456627 3456871 -118386985 + L1MC4a LINE L1 7247 7502 -540 1 611 236 242 110 0 chr11 3456901 3456992 -118386864 + L1MC4a LINE L1 7544 7644 -238 1 611 259 302 10 50 chr11 3457021 3457122 -118386734 + MT2B LTR ERVL 155 251 -350 1 611 547 208 73 0 chr11 3457039 3457135 -118386721 + PB1D7 SINE Alu 9 111 -9 1 611 521 278 41 16 chr11 3457145 3457321 -118386535 + RSINE1 SINE B4 1 185 -107 1 611 257 245 58 87 chr11 3457326 3457429 -118386427 - PB1D10 SINE Alu -13 104 5 1 611 645 262 14 7 chr11 3457474 3457620 -118386236 - B1F SINE Alu -2 147 1 1 611 182 91 0 29 chr11 3457977 3458011 -118385845 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 611 405 305 0 0 chr11 3458031 3458126 -118385730 - RSINE1 SINE B4 -68 97 3 1 611 267 54 0 0 chr11 3458394 3458431 -118385425 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 611 207 0 0 0 chr11 3458533 3458556 -118385300 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1 611 21 0 0 0 chr11 3458574 3458595 -118385261 + AT_rich Low_complexity Low_complexity 1 21 0 1 611 375 212 101 0 chr11 3458611 3458710 -118385146 - PB1D10 SINE Alu -8 109 1 1 611 219 247 23 126 chr11 3459383 3459479 -118384377 - BC1_Mm scRNA scRNA -64 88 4 1 611 431 275 0 0 chr11 3459772 3459863 -118383993 - B4A SINE B4 -201 91 1 1 611 218 32 0 31 chr11 3459864 3459896 -118383960 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 611 779 214 62 19 chr11 3459899 3460061 -118383795 - B3 SINE B2 -46 170 2 1 611 441 0 0 0 chr11 3460064 3460113 -118383743 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 611 216 0 0 0 chr11 3460113 3460136 -118383720 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 611 275 313 32 0 chr11 3460136 3460225 -118383631 - PB1D10 SINE Alu -16 104 8 1 611 366 291 58 0 chr11 3460241 3460344 -118383512 - PB1D10 SINE Alu -8 109 1 1 611 810 137 57 0 chr11 3460498 3460622 -118383234 + B1_Mus2 SINE Alu 4 134 -13 1 611 972 105 0 0 chr11 3460623 3460766 -118383090 + (GGAA)n Simple_repeat Simple_repeat 1 143 0 1 611 580 196 28 18 chr11 3460797 3460906 -118382950 + B1_Mur1 SINE Alu 18 127 -22 1 611 495 33 0 0 chr11 3461094 3461155 -118382701 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 611 656 237 0 0 chr11 3461275 3461393 -118382463 + ID_B1 SINE B4 102 219 -5 1 611 242 342 0 0 chr11 3461407 3461480 -118382376 + ID4_ SINE ID 1 73 -10 1 611 282 311 83 97 chr11 3461489 3461706 -118382150 + B4 SINE B4 8 221 -71 1 611 564 236 55 8 chr11 3461581 3461709 -118382147 + B1_Mur1 SINE Alu 14 147 -2 1 611 644 260 6 99 chr11 3462731 3462902 -118380954 - RSINE1 SINE B4 -1 164 10 1 611 476 272 34 26 chr11 3462903 3463020 -118380836 - ID_B1 SINE B4 -8 216 99 1 611 519 271 24 16 chr11 3463158 3463282 -118380574 - B1_Mur4 SINE Alu -21 129 5 1 611 188 229 14 129 chr11 3463772 3463842 -118380014 + MIR SINE MIR 121 182 -80 1 611 515 301 17 64 chr11 3464216 3464450 -118379406 + ID_B1 SINE B4 2 224 0 1 611 293 196 0 18 chr11 3465141 3465198 -118378658 + PB1D10 SINE Alu 60 115 -2 1 611 287 232 0 138 chr11 3465266 3465346 -118378510 + RSINE1 SINE B4 95 163 -2 1 611 188 79 0 50 chr11 3465451 3465491 -118378365 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 1 611 405 246 27 18 chr11 3465491 3465603 -118378253 - PB1D10 SINE Alu 0 117 5 1 611 1287 20 0 7 chr11 3465730 3465878 -118377978 + B1_Mus2 SINE Alu 1 147 0 1 611 770 258 27 45 chr11 3466909 3467132 -118376724 - ID_B1 SINE B4 -3 221 3 1 611 283 195 126 24 chr11 3467132 3467217 -118376639 - ID4_ SINE ID -50 102 16 1 611 625 276 45 17 chr11 3467511 3467688 -118376168 + B3A SINE B2 1 182 -16 1 611 432 0 0 0 chr11 3467693 3467741 -118376115 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 611 282 200 172 32 chr11 3468007 3468100 -118375756 + MLT1F1 LTR MaLR 3 108 -461 1 611 240 342 220 8 chr11 3468197 3468315 -118375541 + MLT1F1 LTR MaLR 251 393 -155 1 611 712 181 8 24 chr11 3468355 3468608 -118375248 + CT-rich Low_complexity Low_complexity 1 248 0 1 611 356 371 21 64 chr11 3468663 3468804 -118375052 - B1F SINE Alu 0 149 15 1 611 845 123 0 7 chr11 3468925 3469064 -118374792 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 1 611 256 287 167 65 chr11 3469064 3469202 -118374654 - B4A SINE B4 -46 246 95 1 611 562 259 0 0 chr11 3469099 3469207 -118374649 - PB1D7 SINE Alu -8 112 5 1 611 297 311 89 42 chr11 3469324 3469515 -118374341 + MER74A LTR ERVL 250 449 -109 1 611 1901 182 32 32 chr11 3469871 3470313 -118373543 - RMER10A LTR ERVL 0 442 1 1 611 454 281 141 0 chr11 3470708 3470836 -118373020 + ID_B1 SINE B4 1 146 -78 1 611 434 229 196 21 chr11 3470834 3470977 -118372879 + B4 SINE B4 63 230 -62 1 611 844 252 38 71 chr11 3471002 3471421 -118372435 - RLTR11A2 LTR ERVK -29 412 1 1 611 756 191 88 19 chr11 3471421 3471581 -118372275 + B3A SINE B2 46 216 0 1 611 362 262 68 0 chr11 3471623 3471726 -118372130 + RSINE1 SINE B4 44 153 -12 1 611 251 209 0 0 chr11 3471722 3471765 -118372091 + ID_B1 SINE B4 142 184 -40 1 611 800 152 27 27 chr11 3471912 3472061 -118371795 + B1_Mur3 SINE Alu 1 149 0 1 611 517 28 28 0 chr11 3473600 3473671 -118370185 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 611 269 250 145 0 chr11 3473845 3473969 -118369887 - B1F1 SINE Alu -6 143 2 1 611 194 209 23 0 chr11 3474130 3474173 -118369683 + L2a LINE L2 3377 3420 -6 1 611 571 222 0 41 chr11 3474213 3474335 -118369521 + PB1D10 SINE Alu 1 117 0 1 611 582 254 30 0 chr11 3474339 3474473 -118369383 + B1F SINE Alu 11 148 -1 1 611 387 0 0 0 chr11 3475097 3475140 -118368716 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 611 189 0 0 0 chr11 3475631 3475652 -118368204 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 1 611 282 288 14 14 chr11 3475652 3475726 -118368130 + MIR3 SINE MIR 116 189 -19 1 611 291 277 90 49 chr11 3475793 3475937 -118367919 + RSINE1 SINE B4 2 151 -14 1 611 1072 43 64 14 chr11 3476085 3476225 -118367631 + B1_Mus2 SINE Alu 1 147 0 1 611 243 0 0 0 chr11 3476225 3476252 -118367604 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1 611 23 0 0 0 chr11 3476342 3476365 -118367491 + AT_rich Low_complexity Low_complexity 1 23 0 1 611 421 237 20 40 chr11 3476512 3476613 -118367243 - PB1D7 SINE Alu -1 119 21 1 611 351 275 32 32 chr11 3477845 3477969 -118365887 - MIRc SINE MIR -96 172 49 1 611 243 250 89 0 chr11 3477993 3478049 -118365807 - ID4_ SINE ID -12 71 11 1 611 289 247 96 11 chr11 3478076 3478170 -118365686 + ORR1E LTR MaLR 7 108 -251 1 611 2750 165 43 63 chr11 3478174 3478838 -118365018 + RMER1B Other Other 84 1061 -5 1 611 1235 48 0 0 chr11 3478897 3479044 -118364812 + B1_Mus2 SINE Alu 1 147 0 1 611 796 249 266 44 chr11 3479084 3479305 -118364551 - MTE2a LTR MaLR -6 373 106 1 611 1208 48 0 0 chr11 3479305 3479450 -118364406 - B1_Mm SINE Alu -1 146 2 1 611 796 274 5 61 chr11 3479450 3479500 -118364356 - MTE2a LTR MaLR -274 105 56 1 611 217 80 120 0 chr11 3479620 3479670 -118364186 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 1 611 771 158 29 22 chr11 3479670 3479806 -118364050 - B1_Mur3 SINE Alu -8 141 5 1 611 269 318 104 15 chr11 3479975 3480109 -118363747 - MIR3 SINE MIR -9 199 54 1 611 1267 51 0 0 chr11 3480968 3481125 -118362731 + B2_Mm2 SINE B2 2 158 -37 1 611 724 289 64 34 chr11 3481258 3481491 -118362365 - MER2 DNA MER2_type -2 343 104 1 611 767 157 16 0 chr11 3481840 3481961 -118361895 + B1_Mur4 SINE Alu 26 148 -2 1 611 273 256 0 49 chr11 3481966 3482048 -118361808 + (TATG)n Simple_repeat Simple_repeat 2 79 0 1 611 189 0 0 0 chr11 3482048 3482069 -118361787 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 611 603 264 7 46 chr11 3482254 3482405 -118361451 - B1_Mur2 SINE Alu -3 146 2 1 611 241 344 11 32 chr11 3482405 3482490 -118361366 - MER81 DNA AcHobo -31 83 1 1 611 652 307 30 34 chr11 3482495 3482731 -118361125 - MIR SINE MIR -21 241 7 1 611 522 0 0 0 chr11 3482875 3482933 -118360923 + (TAAAAA)n Simple_repeat Simple_repeat 2 59 0 1 611 26 0 0 0 chr11 3482965 3482991 -118360865 + AT_rich Low_complexity Low_complexity 1 26 0 1 611 484 296 51 32 chr11 3483310 3483467 -118360389 - MER20 DNA MER1_type -59 160 1 1 611 375 226 171 45 chr11 3483641 3483752 -118360104 + B1_Mus1 SINE Alu 11 135 -13 1 611 654 13 0 0 chr11 3483753 3483828 -118360028 + (TAAA)n Simple_repeat Simple_repeat 3 77 0 1 611 6265 227 84 30 chr11 3484207 3484269 -118359587 - Lx7 LINE L1 -282 7414 7356 1 611 558 89 0 0 chr11 3484269 3484359 -118359497 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 611 6265 227 84 30 chr11 3484359 3485962 -118357894 - Lx7 LINE L1 -341 7355 5659 1 611 732 230 122 30 chr11 3485963 3486160 -118357696 - B4A SINE B4 -76 216 2 1 611 276 219 0 47 chr11 3486654 3486735 -118357121 + GA-rich Low_complexity Low_complexity 1 77 0 1 611 1356 75 37 0 chr11 3486735 3486923 -118356933 + B2_Mm2 SINE B2 1 195 0 1 611 276 219 0 47 chr11 3486923 3486970 -118356886 + polypurine Low_complexity Low_complexity 78 123 0 1 611 357 24 0 0 chr11 3486971 3487013 -118356843 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 611 466 56 28 0 chr11 3487080 3487093 -118356763 + (GAAAA)n Simple_repeat Simple_repeat 4 16 0 1 611 1136 76 7 0 chr11 3487093 3487238 -118356618 + B1_Mus2 SINE Alu 2 147 0 1 611 466 56 28 0 chr11 3487238 3487296 -118356560 + (GAAAA)n Simple_repeat Simple_repeat 2 61 0 1 611 306 254 14 0 chr11 3487598 3487669 -118356187 + B4 SINE B4 1 72 -220 1 611 236 200 0 16 chr11 3487791 3487852 -118356004 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 611 326 246 38 0 chr11 3487852 3487932 -118355924 + B4 SINE B4 229 292 0 1 611 875 162 212 21 chr11 3488162 3488351 -118355505 - URR1A DNA MER1_type 0 226 2 1 611 763 288 22 22 chr11 3488508 3488732 -118355124 - ID_B1 SINE B4 0 224 1 1 611 394 245 107 10 chr11 3488737 3488840 -118355016 - PB1D9 SINE Alu -5 115 3 1 611 316 281 88 14 chr11 3488841 3488989 -118354867 + L1MD2 LINE L1 1054 1212 -5197 1 611 580 111 0 0 chr11 3488999 3489080 -118354776 + B3 SINE B2 2 82 -134 1 611 505 303 0 103 chr11 3489078 3489178 -118354678 + RSINE1 SINE B4 25 123 -42 1 611 1301 103 54 0 chr11 3489178 3489363 -118354493 - B2_Mm2 SINE B2 0 195 1 1 611 505 303 0 103 chr11 3489363 3489398 -118354458 + RSINE1 SINE B4 124 146 -19 1 611 23 33 0 0 chr11 3489430 3489460 -118354396 + AT_rich Low_complexity Low_complexity 1 30 0 1 611 1276 150 28 0 chr11 3489568 3489773 -118354083 - MTC LTR MaLR -8 413 203 1 611 956 123 7 0 chr11 3489773 3489928 -118353928 + (TC)n Simple_repeat Simple_repeat 2 157 0 1 611 453 209 56 19 chr11 3489935 3490035 -118353821 - PB1D9 SINE Alu -6 114 4 1 611 1231 129 40 0 chr11 3490035 3490229 -118353627 - MTC LTR MaLR -219 202 1 1 611 650 243 0 27 chr11 3490253 3490401 -118353455 + B1_Mur1 SINE Alu 1 144 -5 1 611 486 49 0 0 chr11 3490488 3490549 -118353307 + (CAAT)n Simple_repeat Simple_repeat 4 64 0 1 611 1063 90 14 0 chr11 3490663 3490807 -118353049 - B1_Mus2 SINE Alu 0 147 2 1 611 339 25 0 0 chr11 3490946 3490986 -118352870 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 611 359 306 109 0 chr11 3490986 3491179 -118352677 + L1MD2 LINE L1 4667 4880 -1526 1 611 507 33 0 0 chr11 3491483 3491544 -118352312 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 611 338 326 125 23 chr11 3491715 3492108 -118351748 + L1MD2 LINE L1 5113 5545 -861 1 611 1512 173 19 83 chr11 3492135 3492457 -118351399 - ORR1B1 LTR MaLR -9 385 31 1 611 642 112 75 23 chr11 3492462 3492635 -118351221 + RMER17A2 LTR ERVK 332 513 -393 1 611 292 148 19 0 chr11 3492648 3492702 -118351154 - ORR1B1 LTR MaLR -319 75 21 1 611 590 263 125 50 chr11 3492719 3492959 -118350897 + B4 SINE B4 27 284 -8 1 611 617 240 14 94 chr11 3493015 3493227 -118350629 + B3A SINE B2 4 198 0 1 611 991 286 81 96 chr11 3493252 3493723 -118350133 + L1MD2 LINE L1 5609 6052 -567 1 611 1181 68 0 13 chr11 3493723 3493872 -118349984 + B1_Mus2 SINE Alu 1 147 0 1 611 991 283 82 102 chr11 3493872 3494224 -118349632 + L1MD2 LINE L1 6053 6412 -207 1 611 692 195 0 8 chr11 3494361 3494480 -118349376 - PB1D9 SINE Alu -1 119 2 1 611 531 270 142 35 chr11 3494516 3494685 -118349171 + B3 SINE B2 6 192 -24 1 611 254 317 90 63 chr11 3494742 3494843 -118349013 - B4A SINE B4 -1 291 188 1 611 327 259 51 109 chr11 3494843 3494943 -118348913 - ORR1D2 LTR MaLR 0 370 273 1 611 429 190 450 26 chr11 3494943 3495094 -118348762 - B3 SINE B2 0 216 2 1 611 327 259 51 109 chr11 3495094 3495149 -118348707 - ORR1D2 LTR MaLR -98 272 224 1 611 332 270 16 73 chr11 3495451 3495564 -118348292 + B1F1 SINE Alu 33 138 -11 1 611 180 0 0 0 chr11 3495564 3495584 -118348272 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 611 1148 44 0 0 chr11 3495700 3495835 -118348021 + B1_Mus1 SINE Alu 2 136 -12 1 611 243 0 0 0 chr11 3495835 3495862 -118347994 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 611 1269 97 11 0 chr11 3495903 3496079 -118347777 + B2_Mm1t SINE B2 2 179 -14 1 611 403 64 330 9 chr11 3496107 3496216 -118347640 + B2_Mm2 SINE B2 47 190 -5 1 611 252 0 0 0 chr11 3496226 3496254 -118347602 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 611 801 106 327 6 chr11 3496255 3496417 -118347439 - B3 SINE B2 -1 215 2 1 611 614 282 0 0 chr11 3496576 3496693 -118347163 + B3 SINE B2 87 203 -13 1 611 345 47 0 0 chr11 3496693 3496736 -118347120 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 611 1032 174 30 2 chr11 3497075 3497269 -118346587 + B3 SINE B2 1 197 -1 1 611 268 266 62 25 chr11 3497702 3497783 -118346073 + RSINE1 SINE B4 3 86 -79 1 611 810 102 0 0 chr11 3497866 3497984 -118345872 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 1 611 949 304 28 11 chr11 3497997 3498283 -118345573 + B4 SINE B4 2 292 0 1 611 238 296 57 51 chr11 3498382 3498516 -118345340 + MIRc SINE MIR 27 161 -107 1 611 186 43 0 0 chr11 3498644 3498667 -118345189 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 611 381 127 0 0 chr11 3498672 3498708 -118345148 + (T)n Simple_repeat Simple_repeat 1 36 0 1 611 1238 61 0 0 chr11 3498708 3498856 -118345000 - B1_Mus1 SINE Alu 0 148 1 1 611 381 127 0 0 chr11 3498856 3498882 -118344974 + (T)n Simple_repeat Simple_repeat 1 26 0 1 611 286 370 64 9 chr11 3498912 3499021 -118344835 - B1F2 SINE Alu -20 129 15 1 611 256 294 10 61 chr11 3498933 3499031 -118344825 - ID_B1 SINE B4 -45 179 87 1 611 408 306 22 27 chr11 3499278 3499463 -118344393 - L1MC3 LINE L1 -162 7623 7440 1 611 271 229 0 67 chr11 3499468 3499543 -118344313 - ID_B1 SINE B4 -5 219 150 1 611 469 250 8 51 chr11 3499576 3499694 -118344162 - B3 SINE B2 -1 215 103 1 611 290 253 109 11 chr11 3499696 3499788 -118344068 - B3 SINE B2 -44 172 72 1 611 269 290 14 0 chr11 3499765 3499834 -118344022 - B3 SINE B2 -44 172 103 1 611 276 275 14 0 chr11 3499836 3499905 -118343951 - B3 SINE B2 -44 172 103 1 611 276 275 14 0 chr11 3499907 3499976 -118343880 - B3 SINE B2 -44 172 103 1 611 547 263 7 7 chr11 3500011 3500149 -118343707 - B3 SINE B2 -77 139 2 1 611 205 152 0 0 chr11 3500291 3500324 -118343532 + CT-rich Low_complexity Low_complexity 2 34 0 2 611 450 0 0 0 chr11 3500324 3500374 -118343482 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 611 423 0 0 0 chr11 3500374 3500420 -118343436 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 611 397 356 82 41 chr11 3500547 3500840 -118343016 - ORR1E LTR MaLR 0 359 55 5 611 349 331 41 12 chr11 3500893 3501064 -118342792 - L1MC3 LINE L1 -538 7247 7072 6 611 412 227 53 60 chr11 3501082 3501232 -118342624 - MLT1C LTR MaLR -29 438 290 7 611 257 281 31 0 chr11 3501482 3501546 -118342310 - ID4 SINE ID -13 70 5 8 611 309 236 10 101 chr11 3501688 3501787 -118342069 - B1F1 SINE Alu -55 94 5 9 611 221 184 79 0 chr11 3501826 3501902 -118341954 + (TTTA)n Simple_repeat Simple_repeat 4 85 0 1 611 750 195 127 0 chr11 3501907 3502112 -118341744 + RMER4B LTR ERVK 17 247 -338 1 611 630 171 21 2 chr11 3502122 3502607 -118341249 + (CTG)n Simple_repeat Simple_repeat 1 494 0 1 611 552 158 5 43 chr11 3502654 3502839 -118341017 + (CTG)n Simple_repeat Simple_repeat 2 179 0 1 611 353 171 11 0 chr11 3502850 3502938 -118340918 + (CTG)n Simple_repeat Simple_repeat 1 89 0 1 611 1006 240 9 14 chr11 3503069 3503273 -118340583 - B3 SINE B2 -5 211 8 1 611 848 163 14 7 chr11 3503273 3503415 -118340441 - B1_Mur2 SINE Alu -5 144 2 1 611 1623 259 144 76 chr11 3503447 3503621 -118340235 - L1MC3 LINE L1 -931 6854 6695 6 611 931 157 14 7 chr11 3503621 3503769 -118340087 - B1_Mur4 SINE Alu -1 149 1 1 611 1623 259 144 76 chr11 3503769 3503865 -118339991 - L1MC3 LINE L1 -1091 6694 6605 6 611 2358 11 0 0 chr11 3503865 3504127 -118339729 - L1Md_A LINE L1 0 6582 6321 1 611 1623 259 144 76 chr11 3504127 3504500 -118339356 - L1MC3 LINE L1 -1181 6604 6218 6 611 1437 53 15 31 chr11 3504500 3504695 -118339161 - B2_Mm1a SINE B2 0 193 2 1 611 1623 259 144 76 chr11 3504695 3504956 -118338900 - L1MC3 LINE L1 -1568 6217 5929 6 611 294 29 0 0 chr11 3504956 3504991 -118338865 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1 611 1623 259 144 76 chr11 3504991 3505186 -118338670 - L1MC3 LINE L1 -1857 5928 5678 6 611 269 200 50 0 chr11 3505330 3505390 -118338466 - B1F2 SINE Alu -86 63 1 1 611 645 257 121 22 chr11 3505451 3505674 -118338182 + MTD LTR MaLR 1 245 -174 2 611 778 142 8 0 chr11 3505647 3505774 -118338082 + B1_Mus2 SINE Alu 12 139 -8 2 611 457 331 0 0 chr11 3505780 3505919 -118337937 - B3A SINE B2 -54 144 6 2 611 270 0 0 0 chr11 3506340 3506370 -118337486 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 2 611 371 263 21 0 chr11 3506376 3506471 -118337385 - ID_B1 SINE B4 -18 206 110 2 611 242 277 59 0 chr11 3506384 3506485 -118337371 - B1F1 SINE Alu -29 120 14 2 611 242 191 29 29 chr11 3506490 3506560 -118337296 + MER5A1 DNA MER1_type 95 164 -2 2 611 386 244 0 254 chr11 3506871 3507052 -118336804 - B1_Mur3 SINE Alu -12 137 3 2 611 189 0 0 0 chr11 3507063 3507084 -118336772 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 611 273 268 115 0 chr11 3507085 3507168 -118336688 - PB1D10 SINE Alu -48 101 10 2 611 1163 76 0 7 chr11 3507207 3507344 -118336512 + B1_Mus1 SINE Alu 2 138 -10 3 611 209 33 33 0 chr11 3507344 3507374 -118336482 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 611 21 0 0 0 chr11 3507608 3507629 -118336227 + AT_rich Low_complexity Low_complexity 1 21 0 3 611 386 255 43 0 chr11 3507756 3507850 -118336006 - B3A SINE B2 -51 147 50 3 611 24 0 0 0 chr11 3507856 3507880 -118335976 + AT_rich Low_complexity Low_complexity 1 24 0 3 611 1724 169 58 83 chr11 3508041 3508436 -118335420 + RLTR41 LTR ERV1 62 446 0 3 611 365 253 11 54 chr11 3508475 3508567 -118335289 + B1_Mur3 SINE Alu 1 88 -61 3 611 480 224 52 0 chr11 3508618 3508734 -118335122 - RMER15 LTR ERVL 0 575 454 3 611 1154 56 28 0 chr11 3508736 3508880 -118334976 - B1_Mus1 SINE Alu 0 148 1 3 611 741 288 314 46 chr11 3508883 3509278 -118334578 - RMER15-int LTR ERVL -4231 768 268 3 611 1309 143 34 169 chr11 3509278 3509750 -118334106 - RMER17C LTR ERVK -2 408 1 3 611 741 306 104 69 chr11 3509750 3510001 -118333855 - RMER15-int LTR ERVL -4732 267 7 3 611 2590 60 42 3 chr11 3510001 3510334 -118333522 - ORR1A1 LTR MaLR 0 346 1 4 611 776 193 45 28 chr11 3510360 3510536 -118333320 - RMER15 LTR ERVL -44 531 353 3 611 2204 67 22 0 chr11 3510538 3510850 -118333006 - ORR1A2 LTR MaLR -8 319 1 4 611 947 214 161 22 chr11 3510850 3511149 -118332707 - RMER15 LTR ERVL -212 363 22 3 611 240 103 0 49 chr11 3511618 3511659 -118332197 + ORR1B2 LTR MaLR 1 39 -345 4 611 2329 43 0 0 chr11 3511660 3511937 -118331919 + L1_Mus1 LINE L1 6291 6567 0 4 611 25 0 0 0 chr11 3511944 3511969 -118331887 + AT_rich Low_complexity Low_complexity 1 25 0 4 611 1443 141 113 93 chr11 3511969 3512313 -118331543 + ORR1B2 LTR MaLR 17 367 0 4 611 3808 172 92 27 chr11 3512313 3512551 -118331305 + ORR1B2-int LTR MaLR 1 219 -1290 4 611 180 0 0 0 chr11 3512551 3512571 -118331285 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 4 611 3808 172 92 27 chr11 3512571 3513222 -118330634 + ORR1B2-int LTR MaLR 220 947 -562 4 611 351 229 89 41 chr11 3513172 3513295 -118330561 - B3 SINE B2 -82 134 6 4 611 565 298 19 33 chr11 3513379 3513591 -118330265 + ID_B1 SINE B4 15 223 -1 4 611 1042 48 0 45 chr11 3513693 3513798 -118330058 + B1_Mus1 SINE Alu 2 106 -42 4 611 2196 23 114 0 chr11 3513798 3514060 -118329796 - RLTR10B LTR ERVK 0 292 1 4 611 1042 48 0 45 chr11 3514060 3514108 -118329748 + B1_Mus1 SINE Alu 107 148 0 4 611 279 0 0 0 chr11 3514125 3514156 -118329700 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 611 283 203 31 15 chr11 3514542 3514607 -118329249 + ID4_ SINE ID 16 81 -2 5 611 21 0 0 0 chr11 3514777 3514798 -118329058 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 216 0 0 0 chr11 3514952 3514976 -118328880 + (T)n Simple_repeat Simple_repeat 1 24 0 5 611 1072 52 73 0 chr11 3514976 3515112 -118328744 - B1_Mus2 SINE Alu 0 147 2 5 611 303 233 0 0 chr11 3515598 3515658 -118328198 - PB1 SINE Alu -1 126 67 5 611 477 0 0 0 chr11 3516095 3516148 -118327708 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 611 422 100 691 0 chr11 3516148 3516258 -118327598 + B2_Mm2 SINE B2 5 190 -5 5 611 414 340 28 7 chr11 3516269 3516411 -118327445 + MLT1F1 LTR MaLR 14 158 -411 5 611 622 114 18 196 chr11 3516428 3516505 -118327351 + MTC LTR MaLR 3 80 -341 5 611 1610 52 0 5 chr11 3516505 3516699 -118327157 + B2_Mm1a SINE B2 1 193 0 6 611 622 114 18 196 chr11 3516699 3516784 -118327072 + MTC LTR MaLR 81 136 -285 5 611 2298 82 111 3 chr11 3516787 3517166 -118326690 + RMER16 LTR ERVK 114 533 0 6 611 561 118 0 0 chr11 3517166 3517243 -118326613 + MTC LTR MaLR 126 202 -219 5 611 1192 47 0 7 chr11 3517244 3517393 -118326463 + B1_Mus1 SINE Alu 1 148 0 6 611 205 100 0 39 chr11 3517393 3517445 -118326411 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 6 611 1322 122 22 35 chr11 3517448 3517478 -118326378 + MTC LTR MaLR 196 224 -197 5 611 3107 23 0 0 chr11 3517478 3517824 -118326032 - ORR1A0 LTR MaLR 0 346 1 6 611 14408 48 6 7 chr11 3517824 3519618 -118324238 - ORR1A0-int LTR MaLR 0 1792 1 6 611 3153 17 0 0 chr11 3519618 3519964 -118323892 - ORR1A0 LTR MaLR 0 346 1 6 611 1322 122 22 35 chr11 3519964 3520160 -118323696 + MTC LTR MaLR 225 419 -2 5 611 4772 161 62 113 chr11 3520159 3521184 -118322672 + MTC-int LTR MaLR 2 985 -273 5 611 3115 23 0 0 chr11 3521184 3521530 -118322326 + ORR1A0 LTR MaLR 1 346 0 6 611 4772 161 62 113 chr11 3521530 3521642 -118322214 + MTC-int LTR MaLR 986 1083 -175 5 611 914 139 34 14 chr11 3521642 3521788 -118322068 + B1_Mur4 SINE Alu 2 150 0 6 611 4772 161 62 113 chr11 3521788 3521848 -118322008 + MTC-int LTR MaLR 1084 1116 -142 5 611 477 118 0 0 chr11 3521848 3521933 -118321923 + L1Md_F2 LINE L1 6497 6581 -1 6 611 4772 161 62 113 chr11 3521933 3522058 -118321798 + MTC-int LTR MaLR 1117 1257 -1 5 611 2409 132 76 15 chr11 3522062 3522455 -118321401 + MTC LTR MaLR 5 421 0 5 611 180 0 0 0 chr11 3522566 3522586 -118321270 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 611 529 283 51 32 chr11 3522606 3522763 -118321093 - B3A SINE B2 -38 160 1 6 611 241 26 53 0 chr11 3523250 3523288 -118320568 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 611 21 0 0 0 chr11 3523609 3523630 -118320226 + AT_rich Low_complexity Low_complexity 1 21 0 7 611 219 161 0 0 chr11 3523755 3523811 -118320045 + CT-rich Low_complexity Low_complexity 1 56 0 7 611 246 143 82 0 chr11 3523832 3523881 -118319975 - PB1D7 SINE Alu -67 53 1 7 611 362 250 133 48 chr11 3524508 3524718 -118319138 + L1ME4a LINE L1 5880 6107 -17 7 611 1199 55 0 7 chr11 3524953 3525101 -118318755 + B1_Mus2 SINE Alu 1 147 0 7 611 316 257 40 0 chr11 3525144 3525218 -118318638 - MLT1E1 LTR MaLR -105 549 473 7 611 1755 131 45 188 chr11 3525946 3526387 -118317469 + ORR1C1 LTR MaLR 1 378 0 7 611 1318 86 32 5 chr11 3526388 3526547 -118317309 + B2_Mm1a SINE B2 1 160 -33 7 611 315 0 0 0 chr11 3526547 3526582 -118317274 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 7 611 1318 86 32 5 chr11 3526582 3526610 -118317246 + B2_Mm1a SINE B2 161 193 0 7 611 5526 206 54 28 chr11 3526622 3526726 -118317130 + ORR1C1-int LTR MaLR 1 118 -1252 7 611 222 37 0 0 chr11 3526736 3526763 -118317093 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 611 1086 83 14 7 chr11 3526763 3526897 -118316959 - B1_Mus2 SINE Alu -13 134 1 8 611 5526 206 54 28 chr11 3526897 3528127 -118315729 + ORR1C1-int LTR MaLR 119 1369 -1 7 611 2107 107 46 41 chr11 3528127 3528496 -118315360 + ORR1C1 LTR MaLR 1 371 -7 7 611 364 367 22 11 chr11 3528515 3528697 -118315159 + MLT1A1 LTR MaLR 19 202 -172 8 611 542 204 0 9 chr11 3528714 3528828 -118315028 + MLT1A1 LTR MaLR 294 406 -2 8 611 262 367 52 26 chr11 3530553 3530707 -118313149 - MLT1E1 LTR MaLR -204 420 263 7 611 496 299 44 81 chr11 3530877 3531250 -118312606 + MLT1A LTR MaLR 1 448 -19 8 611 374 123 24 24 chr11 3531444 3531527 -118312329 - Lx5 LINE L1 0 7050 6968 8 611 527 265 30 0 chr11 3531717 3531849 -118312007 + B1_Mur1 SINE Alu 1 136 -13 8 611 186 118 0 0 chr11 3532313 3532347 -118311509 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 611 554 317 41 46 chr11 3532349 3532643 -118311213 - B4 SINE B4 -14 278 11 8 611 351 225 35 26 chr11 3533976 3534090 -118309766 - PB1D7 SINE Alu -5 115 1 8 611 225 222 135 53 chr11 3534656 3534789 -118309067 + MamRep4096 DNA hAT? 102 245 -181 8 611 1142 74 0 0 chr11 3535077 3535225 -118308631 - B1_Mus1 SINE Alu 0 148 1 9 611 359 259 0 0 chr11 3535408 3535489 -118308367 - B3 SINE B2 -134 82 2 9 611 224 243 141 14 chr11 3535489 3535544 -118308312 - PB1D10 SINE Alu -41 76 13 9 611 1959 39 0 0 chr11 3535798 3536030 -118307826 + L1Md_A LINE L1 6351 6582 0 9 611 886 207 61 25 chr11 3536052 3536250 -118307606 + B3 SINE B2 1 205 -11 9 611 188 273 0 0 chr11 3536324 3536368 -118307488 - MIR SINE MIR -3 259 216 9 611 523 197 62 49 chr11 3537353 3537497 -118306359 - URR1A DNA MER1_type 0 226 81 9 611 396 139 128 0 chr11 3537834 3537920 -118305936 + ORR1B1-int LTR MaLR 23 119 -1390 9 611 1157 62 14 0 chr11 3537928 3538074 -118305782 - B1_Mus1 SINE Alu 0 148 1 9 611 493 179 314 0 chr11 3538130 3538286 -118305570 - B3 SINE B2 -11 205 1 9 612 35 24 0 0 chr11 3539318 3539360 -118304496 + AT_rich Low_complexity Low_complexity 1 42 0 1 612 1183 300 75 76 chr11 3539751 3540328 -118303528 - MLT1K LTR MaLR -2 593 18 1 612 271 210 366 25 chr11 3543365 3543526 -118300330 + Lx8 LINE L1 7258 7473 0 1 612 237 95 24 0 chr11 3544721 3544763 -118299093 + MIRc SINE MIR 206 248 -20 1 612 22 0 0 0 chr11 3546113 3546135 -118297721 + AT_rich Low_complexity Low_complexity 1 22 0 1 612 279 0 0 0 chr11 3547510 3547541 -118296315 + (A)n Simple_repeat Simple_repeat 1 31 0 1 612 451 178 10 29 chr11 3548350 3548454 -118295402 - MIRc SINE MIR -129 139 38 1 612 28 29 0 0 chr11 3548789 3548824 -118295032 + GC_rich Low_complexity Low_complexity 1 35 0 1 612 255 103 0 0 chr11 3549425 3549464 -118294392 + (CGG)n Simple_repeat Simple_repeat 2 40 0 1 612 624 182 87 0 chr11 3551142 3551268 -118292588 - B1F2 SINE Alu -8 141 5 1 612 285 241 35 0 chr11 3551291 3551349 -118292507 - ID_B1 SINE B4 -79 145 86 1 612 199 309 18 0 chr11 3552091 3552146 -118291710 - MIRc SINE MIR -114 154 99 1 612 339 211 110 11 chr11 3552625 3552716 -118291140 - PB1D10 SINE Alu -5 112 13 1 612 269 82 20 0 chr11 3552723 3552772 -118291084 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 1 612 804 21 0 0 chr11 3553157 3553251 -118290605 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 1 612 984 48 81 0 chr11 3553251 3553375 -118290481 - B1_Mm SINE Alu -12 135 2 1 612 804 241 24 76 chr11 3553530 3553741 -118290115 - B3 SINE B2 -4 212 13 1 612 238 33 0 0 chr11 3553740 3553770 -118290086 + U6 snRNA snRNA 2 31 -76 1 612 1169 76 12 6 chr11 3554174 3554346 -118289510 - B2_Mm2 SINE B2 -9 186 14 1 612 451 211 17 52 chr11 3554619 3554734 -118289122 - PB1D9 SINE Alu 0 120 10 1 612 252 304 165 16 chr11 3554621 3554748 -118289108 - B4A SINE B4 -67 225 80 1 612 207 135 18 55 chr11 3555043 3555098 -118288758 + T-rich Low_complexity Low_complexity 2 54 0 1 612 630 205 49 0 chr11 3555101 3555223 -118288633 - B1_Mus2 SINE Alu -1 146 19 1 612 396 289 80 22 chr11 3555223 3555239 -118288617 - ID_B1 SINE B4 -1 223 78 1 612 242 96 19 0 chr11 3555413 3555465 -118288391 - B2_Mm2 SINE B2 -6 189 137 1 612 1108 132 23 0 chr11 3555546 3555720 -118288136 - B2_Mm1t SINE B2 -14 179 2 1 612 675 234 181 26 chr11 3556152 3556345 -118287511 - ID_B1 SINE B4 0 224 2 1 612 572 221 92 0 chr11 3556663 3556794 -118287062 - U4 snRNA snRNA -2 143 1 1 612 250 305 65 28 chr11 3556812 3556920 -118286936 - PB1D10 SINE Alu -5 112 1 1 612 204 67 0 0 chr11 3557371 3557401 -118286455 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 612 1250 41 0 0 chr11 3557404 3557551 -118286305 - B1_Mus1 SINE Alu 0 148 2 1 612 1235 81 81 0 chr11 3557875 3558049 -118285807 + B2_Mm1t SINE B2 2 189 -4 1 612 21 36 0 0 chr11 3558456 3558484 -118285372 + AT_rich Low_complexity Low_complexity 1 28 0 1 612 408 226 140 59 chr11 3559179 3559315 -118284541 - B1F2 SINE Alu 0 149 3 1 612 213 119 0 0 chr11 3559543 3559585 -118284271 + (T)n Simple_repeat Simple_repeat 1 42 0 1 612 879 25 8 8 chr11 3559585 3559705 -118284151 - B1_Mus1 SINE Alu 0 148 29 1 612 288 283 196 0 chr11 3559825 3559917 -118283939 - PB1D10 SINE Alu -1 116 7 1 612 232 283 0 138 chr11 3560130 3560253 -118283603 - PB1D10 SINE Alu -7 110 5 1 612 428 339 96 51 chr11 3560144 3560321 -118283535 - ID_B1 SINE B4 -39 185 1 1 612 338 222 56 0 chr11 3560401 3560473 -118283383 - ID4_ SINE ID -3 80 5 1 612 207 189 0 0 chr11 3560840 3560877 -118282979 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 612 425 302 160 17 chr11 3560892 3561067 -118282789 + B4A SINE B4 35 234 -58 1 612 425 254 124 22 chr11 3561060 3561197 -118282659 + RSINE1 SINE B4 12 162 -3 1 612 244 254 0 16 chr11 3561273 3561337 -118282519 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 1 612 588 330 25 0 chr11 3561395 3561595 -118282261 + ID_B1 SINE B4 3 207 -17 1 612 962 226 85 110 chr11 3562277 3562794 -118281062 - MT2B LTR ERVL -85 516 1 1 612 7578 167 48 62 chr11 3562794 3564302 -118279554 - MERVL_2A-int LTR ERVL 0 5761 4275 1 612 1034 148 18 0 chr11 3564304 3564473 -118279383 - MERVL_2A-int LTR ERVL -1683 4078 3907 1 612 3593 195 38 6 chr11 3564473 3565274 -118278582 - MERVL_2A-int LTR ERVL -5019 742 2 1 612 334 216 88 26 chr11 3565281 3565395 -118278461 - MT2B LTR ERVL -246 355 274 1 612 233 281 66 22 chr11 3565419 3565510 -118278346 - MT2B LTR ERVL -401 132 38 1 612 1187 55 0 7 chr11 3566116 3566264 -118277592 - B1_Mus2 SINE Alu 0 147 1 1 612 475 232 50 0 chr11 3566809 3566930 -118276926 + ID_B1 SINE B4 78 200 -24 1 612 318 272 105 39 chr11 3570228 3570381 -118273475 - MIRb SINE MIR -18 250 88 1 612 279 269 0 0 chr11 3571520 3571587 -118272269 - ID4 SINE ID -13 70 4 1 612 1265 190 0 9 chr11 3573045 3573263 -118270593 + B3 SINE B2 1 216 0 1 612 664 243 7 0 chr11 3573329 3573465 -118270391 - B1_Mur1 SINE Alu -1 148 12 1 612 192 158 0 0 chr11 3574325 3574363 -118269493 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 1 612 329 319 0 43 chr11 3575462 3575603 -118268253 - L1M5 LINE L1 -544 5696 5562 1 612 675 179 18 0 chr11 3579236 3579348 -118264508 + PB1D9 SINE Alu 1 114 -6 1 612 474 251 131 134 chr11 3580947 3581031 -118262825 - MTD LTR MaLR -14 405 296 1 612 801 93 17 17 chr11 3581031 3581151 -118262705 + PB1D9 SINE Alu 1 120 0 1 612 474 251 131 134 chr11 3581151 3581402 -118262454 - MTD LTR MaLR -124 295 71 1 612 216 200 0 0 chr11 3582110 3582155 -118261701 + C-rich Low_complexity Low_complexity 2 46 0 1 612 252 254 45 60 chr11 3582178 3582245 -118261611 - ID4_ SINE ID -16 67 2 1 612 466 196 103 0 chr11 3582534 3582631 -118261225 + PB1D9 SINE Alu 1 107 -13 1 612 180 77 0 0 chr11 3582636 3582662 -118261194 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 612 769 168 29 21 chr11 3582765 3582905 -118260951 - B1_Mur4 SINE Alu 0 150 10 1 612 412 278 80 74 chr11 3582770 3582945 -118260911 - B4 SINE B4 -71 221 46 1 612 273 206 228 40 chr11 3583060 3583161 -118260695 - B3A SINE B2 -75 120 1 1 612 24 32 0 0 chr11 3583319 3583350 -118260506 + AT_rich Low_complexity Low_complexity 1 31 0 1 612 411 214 58 0 chr11 3585068 3585171 -118258685 - PB1D10 SINE Alu -8 109 1 1 612 325 316 184 0 chr11 3586702 3586854 -118257002 - MER58A DNA MER1_type -26 198 19 1 612 1152 98 63 6 chr11 3587144 3587319 -118256537 + B2_Mm1t SINE B2 1 185 -8 1 612 21 0 0 0 chr11 3589265 3589286 -118254570 + AT_rich Low_complexity Low_complexity 1 21 0 1 612 1068 87 0 0 chr11 3592397 3592535 -118251321 - B1_Mus1 SINE Alu -6 142 5 1 612 524 231 210 17 chr11 3592813 3592989 -118250867 - B3 SINE B2 -6 210 1 1 612 267 271 193 18 chr11 3593226 3593335 -118250521 - B1_Mus2 SINE Alu -19 128 1 1 612 432 221 134 0 chr11 3593653 3593780 -118250076 + B3A SINE B2 1 144 -54 1 612 222 191 24 0 chr11 3594052 3594094 -118249762 - ID4 SINE ID -17 66 24 1 612 1167 118 73 6 chr11 3594094 3594273 -118249583 - B2_Mm2 SINE B2 -4 191 1 1 612 180 111 0 0 chr11 3594391 3594418 -118249438 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 612 717 216 73 34 chr11 3594603 3594780 -118249076 + B3 SINE B2 29 212 -4 1 612 791 163 14 28 chr11 3595297 3595442 -118248414 - B1_Mur4 SINE Alu 0 150 8 1 612 218 278 126 70 chr11 3595561 3595584 -118248272 - B4A SINE B4 -141 151 1 1 612 573 208 17 0 chr11 3595584 3595704 -118248152 - B3A SINE B2 -76 122 1 1 612 1083 88 6 40 chr11 3596300 3596477 -118247379 + B2_Mm2 SINE B2 2 172 -23 1 612 634 121 0 0 chr11 3596624 3596723 -118247133 + B1_Mur4 SINE Alu 52 150 0 1 612 1369 63 17 0 chr11 3596773 3596948 -118246908 + B2_Mm1t SINE B2 2 179 -14 1 612 338 63 345 26 chr11 3596999 3597112 -118246744 + B2_Mm2 SINE B2 47 195 0 1 612 732 183 53 12 chr11 3597587 3597758 -118246098 - B2_Mm2 SINE B2 -14 181 4 1 612 1478 269 100 35 chr11 3598439 3598936 -118244920 - L1_Rod LINE L1 -2884 2963 2423 1 612 1390 58 23 0 chr11 3598936 3599108 -118244748 + B2_Mm2 SINE B2 2 177 -18 1 612 1478 276 102 36 chr11 3599108 3599535 -118244321 - L1_Rod LINE L1 -3425 2422 1953 1 612 1011 97 26 0 chr11 3599737 3599891 -118243965 - B2_Mm1t SINE B2 -22 171 14 1 612 794 273 105 18 chr11 3599958 3600234 -118243622 - RMER15 LTR ERVL 0 575 276 1 612 291 251 33 55 chr11 3600978 3601108 -118242748 - L1_Rod LINE L1 -4181 1666 1528 1 612 225 262 8 86 chr11 3601331 3601448 -118242408 - L1M2 LINE L1 -5027 1822 1715 1 612 779 176 30 0 chr11 3601542 3601673 -118242183 - B1_Mur4 SINE Alu -15 135 1 1 612 26 0 0 0 chr11 3601702 3601728 -118242128 + AT_rich Low_complexity Low_complexity 1 26 0 1 612 512 115 10 0 chr11 3601832 3601936 -118241920 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 612 221 233 0 0 chr11 3602719 3602762 -118241094 - B4A SINE B4 -220 72 30 1 612 26 30 0 0 chr11 3604184 3604217 -118239639 + AT_rich Low_complexity Low_complexity 1 33 0 1 612 200 227 0 0 chr11 3606247 3606291 -118237565 + T-rich Low_complexity Low_complexity 1 44 0 1 612 891 205 43 43 chr11 3606772 3606981 -118236875 - B3 SINE B2 -7 209 1 1 612 889 134 7 14 chr11 3607528 3607672 -118236184 - B1_Mur2 SINE Alu -5 144 2 1 612 394 306 159 0 chr11 3607923 3608080 -118235776 - B3A SINE B2 -16 182 1 1 612 266 272 111 46 chr11 3608083 3608191 -118235665 - PB1D7 SINE Alu -1 119 5 2 612 271 250 37 62 chr11 3608225 3608306 -118235550 - ID4_ SINE ID -3 80 2 2 612 678 133 0 0 chr11 3608406 3608519 -118235337 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 2 612 1277 179 51 63 chr11 3608589 3608922 -118234934 + ORR1D1 LTR MaLR 1 329 -45 2 612 318 242 113 32 chr11 3609002 3609126 -118234730 - B1_Mur1 SINE Alu -15 134 1 2 612 446 252 29 0 chr11 3609214 3609317 -118234539 - ID_B1 SINE B4 -2 222 117 2 612 423 0 0 0 chr11 3609397 3609444 -118234412 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 612 243 0 0 0 chr11 3609565 3609592 -118234264 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 612 843 213 44 19 chr11 3609936 3610142 -118233714 + B3 SINE B2 1 211 -5 2 612 287 175 95 0 chr11 3610178 3610241 -118233615 - PB1D10 SINE Alu 0 117 49 2 612 465 241 95 0 chr11 3610702 3610818 -118233038 + B1F SINE Alu 2 128 -21 2 612 242 196 125 0 chr11 3611071 3611127 -118232729 - B1_Mur2 SINE Alu 0 149 87 2 612 370 216 23 133 chr11 3611107 3611235 -118232621 - B1F SINE Alu -16 133 20 2 612 1089 195 205 62 chr11 3612879 3613201 -118230655 + ORR1D1 LTR MaLR 4 371 -3 2 612 188 327 26 35 chr11 3614835 3614949 -118228907 + L2a LINE L2 3214 3326 -100 2 612 797 196 8 0 chr11 3616239 3616372 -118227484 - B1_Mur1 SINE Alu -13 136 3 2 612 565 229 50 7 chr11 3618279 3618420 -118225436 + B1F SINE Alu 1 147 -2 2 612 500 290 23 8 chr11 3618570 3618702 -118225154 - B1F SINE Alu -11 138 5 2 612 1083 257 56 104 chr11 3618741 3619136 -118224720 - MTE2a LTR MaLR 0 379 4 2 612 218 295 12 17 chr11 3620513 3620592 -118223264 - MIRm SINE MIR -167 101 21 2 612 192 143 0 0 chr11 3624362 3624404 -118219452 + (T)n Simple_repeat Simple_repeat 1 42 0 2 612 715 108 8 8 chr11 3625699 3625820 -118218036 + (TC)n Simple_repeat Simple_repeat 1 121 0 2 612 231 88 0 0 chr11 3625966 3626000 -118217856 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 612 312 270 0 13 chr11 3626020 3626095 -118217761 + BC1_Mm scRNA scRNA 2 75 -77 2 612 315 0 0 0 chr11 3626099 3626134 -118217722 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 612 236 228 53 0 chr11 3628342 3628399 -118215457 + L1M1 LINE L1 5836 5895 -405 2 612 977 79 7 7 chr11 3628507 3628648 -118215208 + LTRIS2 LTR ERV1 345 485 -79 2 612 259 246 0 84 chr11 3628933 3629004 -118214852 + B4 SINE B4 149 213 -79 2 612 233 283 83 0 chr11 3629042 3629102 -118214754 + B4 SINE B4 225 289 -3 2 612 345 350 79 40 chr11 3629140 3629393 -118214463 - MER2 DNA MER2_type -82 263 1 2 612 628 289 44 0 chr11 3631766 3631925 -118211931 - ID_B1 SINE B4 -58 166 1 2 612 399 21 0 0 chr11 3632412 3632460 -118211396 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 612 578 51 13 0 chr11 3632462 3632540 -118211316 + (GGA)n Simple_repeat Simple_repeat 2 80 0 2 612 1313 104 49 0 chr11 3632552 3632735 -118211121 + B2_Mm2 SINE B2 2 193 -2 2 612 412 307 107 45 chr11 3632739 3632968 -118210888 + MLT1C LTR MaLR 220 386 -4 2 612 378 287 228 0 chr11 3633116 3633283 -118210573 - MLT1D LTR MaLR -299 206 2 2 612 651 26 0 0 chr11 3633666 3633743 -118210113 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 612 421 169 56 0 chr11 3633811 3633900 -118209956 - L1MA4 LINE L1 -405 5895 5802 2 612 660 198 5 33 chr11 3634889 3635077 -118208779 + HAL1-2a_MD LINE L1 2345 2505 -519 2 612 400 208 41 20 chr11 3635456 3635554 -118208302 + PB1D10 SINE Alu 18 117 0 2 612 180 111 0 0 chr11 3636250 3636277 -118207579 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 2 612 188 257 25 86 chr11 3636457 3636538 -118207318 + L3 LINE CR1 4397 4472 -17 2 612 692 158 63 0 chr11 3637120 3637247 -118206609 - B1_Mur1 SINE Alu -6 143 9 2 612 183 42 0 0 chr11 3638807 3638831 -118205025 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 612 310 256 77 39 chr11 3639089 3639219 -118204637 + MLT1A1 LTR MaLR 268 402 -6 2 612 300 301 32 21 chr11 3639458 3639553 -118204303 + L1MEf LINE L1 2475 2570 -4517 2 612 687 37 0 0 chr11 3639553 3639635 -118204221 + L1Md_F3 LINE L1 5505 5586 -297 2 612 8376 34 4 9 chr11 3639635 3640633 -118203223 + L1Md_F3 LINE L1 5587 6579 -5 2 612 429 345 70 55 chr11 3640640 3641038 -118202818 + L1MEf LINE L1 2577 2996 -4091 2 612 321 291 78 0 chr11 3641385 3641602 -118202254 + L1MEf LINE L1 3480 3619 -3715 2 612 244 248 71 35 chr11 3642673 3642786 -118201070 + L1MEf LINE L1 4499 4615 -2391 2 612 291 276 189 19 chr11 3643431 3643744 -118200112 + L1M4 LINE L1 5447 5822 -358 2 612 581 272 21 7 chr11 3643802 3643977 -118199879 + MTE2b LTR MaLR 201 379 0 2 612 360 0 0 0 chr11 3644428 3644468 -118199388 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 612 293 326 92 65 chr11 3645001 3645293 -118198563 + L1MB7 LINE L1 4809 5108 -1038 2 612 510 264 113 27 chr11 3645296 3645648 -118198208 + L1MB7 LINE L1 5213 5589 -585 2 612 225 0 0 0 chr11 3645747 3645772 -118198084 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 612 180 0 0 0 chr11 3646933 3646953 -118196903 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 612 1205 55 0 7 chr11 3646980 3647127 -118196729 - B1_Mus2 SINE Alu 0 147 2 2 612 247 299 24 15 chr11 3648311 3648412 -118195444 + RMER4A LTR ERVK 8 108 -358 2 612 756 303 36 14 chr11 3648656 3648827 -118195029 + L1MB7 LINE L1 5738 5925 -259 2 612 732 207 55 105 chr11 3648827 3648949 -118194907 - URR1A DNA MER1_type 0 226 103 2 612 1220 68 0 0 chr11 3648949 3649096 -118194760 - B1_Mus1 SINE Alu 0 148 2 2 612 732 207 55 105 chr11 3649096 3649211 -118194645 - URR1A DNA MER1_type -124 102 1 2 612 756 343 73 28 chr11 3649211 3649457 -118194399 + L1MB7 LINE L1 5926 6175 -9 2 612 807 221 30 107 chr11 3650213 3650446 -118193410 + ID_B1 SINE B4 10 224 0 2 612 399 263 5 63 chr11 3650561 3650752 -118193104 + G-rich Low_complexity Low_complexity 1 180 0 2 612 236 238 24 24 chr11 3650775 3650857 -118192999 + GA-rich Low_complexity Low_complexity 4 85 0 2 612 243 331 8 52 chr11 3650901 3651035 -118192821 + L1ME2z LINE L1 6313 6440 -4 2 612 497 230 164 7 chr11 3651289 3651429 -118192427 - RSINE1 SINE B4 0 165 4 2 612 470 240 77 0 chr11 3651623 3651727 -118192129 + PB1D7 SINE Alu 1 112 -8 2 612 617 250 222 48 chr11 3651832 3652080 -118191776 - B4A SINE B4 0 292 2 2 612 360 0 0 0 chr11 3652165 3652205 -118191651 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 612 1167 56 0 14 chr11 3652209 3652354 -118191502 - B1_Mus1 SINE Alu -5 143 1 2 612 303 298 97 0 chr11 3653229 3653353 -118190503 + MER45A DNA Tip100 38 173 -5 2 612 262 269 51 0 chr11 3653569 3653647 -118190209 - ID4 SINE ID 0 83 2 2 612 459 224 10 0 chr11 3653699 3653797 -118190059 + PB1D9 SINE Alu 15 113 -7 2 612 614 255 24 48 chr11 3653805 3654015 -118189841 + B4A SINE B4 1 205 -87 2 612 264 300 47 62 chr11 3655201 3655329 -118188527 + MER91B DNA Tip100 1 126 -64 2 612 370 261 43 0 chr11 3656484 3656576 -118187280 + MIRb SINE MIR 88 183 -85 2 612 460 185 100 18 chr11 3657979 3658089 -118185767 + PB1D7 SINE Alu 2 120 0 2 612 345 213 0 0 chr11 3658672 3658780 -118185076 + (CA)n Simple_repeat Simple_repeat 2 109 0 2 612 524 349 10 25 chr11 3658832 3659035 -118184821 - RMER30 DNA MER1_type -1 201 2 2 612 591 259 112 0 chr11 3659439 3659461 -118184395 - RSINE1 SINE B4 -6 159 138 2 612 396 0 0 0 chr11 3659461 3659505 -118184351 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 612 591 259 112 0 chr11 3659505 3659625 -118184231 - RSINE1 SINE B4 -28 137 3 2 612 260 288 120 73 chr11 3662681 3662831 -118181025 + L2 LINE L2 2418 2574 -845 2 612 219 296 0 53 chr11 3663477 3663552 -118180304 + (CATG)n Simple_repeat Simple_repeat 2 72 0 2 612 297 0 0 0 chr11 3663822 3663855 -118180001 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 612 315 328 52 7 chr11 3665523 3665658 -118178198 + L1M5 LINE L1 5618 5758 -366 2 612 676 312 116 14 chr11 3666315 3666591 -118177265 + MLT1B LTR MaLR 87 390 0 2 612 309 191 0 78 chr11 3666961 3667036 -118176820 + PB1D10 SINE Alu 59 149 0 2 612 516 231 198 36 chr11 3667342 3667383 -118176473 - B4A SINE B4 -1 291 231 2 612 713 289 0 0 chr11 3667383 3667542 -118176314 - RSINE1 SINE B4 -4 161 3 2 612 516 231 198 36 chr11 3667542 3667747 -118176109 - B4A SINE B4 -62 230 5 2 612 1628 165 109 21 chr11 3669128 3669468 -118174388 + ORR1D1 LTR MaLR 5 374 0 2 613 545 263 112 92 chr11 3670050 3670301 -118173555 - MLT1C LTR MaLR -27 440 185 2 613 339 332 8 30 chr11 3670307 3670574 -118173282 + (TG)n Simple_repeat Simple_repeat 1 260 0 2 613 296 169 47 94 chr11 3670595 3670680 -118173176 - MLT1C LTR MaLR -343 124 44 2 613 209 250 0 0 chr11 3672123 3672171 -118171685 + (CCCCAG)n Simple_repeat Simple_repeat 5 52 0 2 613 360 0 0 0 chr11 3673993 3674033 -118169823 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 613 22 0 0 0 chr11 3674622 3674644 -118169212 + GC_rich Low_complexity Low_complexity 1 22 0 2 613 682 244 59 81 chr11 3675851 3676123 -118167733 + Lx6 LINE L1 7194 7459 -1 2 613 182 324 26 26 chr11 3677497 3677573 -118166283 + MIR3 SINE MIR 110 185 -23 2 613 529 277 216 10 chr11 3677606 3677814 -118166042 + B4 SINE B4 17 267 -25 2 613 405 0 0 0 chr11 3677815 3677860 -118165996 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 613 1551 159 118 36 chr11 3677950 3678256 -118165600 - RMER4B LTR ERVK 0 585 255 2 613 330 185 95 36 chr11 3678261 3678492 -118165364 + (CAGC)n Simple_repeat Simple_repeat 1 244 0 2 613 1680 138 13 51 chr11 3678495 3678809 -118165047 - RMER4B LTR ERVK -283 302 1 2 613 1687 134 219 3 chr11 3679064 3679379 -118164477 + ORR1C2 LTR MaLR 1 383 -1 2 613 5364 213 39 44 chr11 3679380 3680757 -118163099 + ORR1C2-int LTR MaLR 2 1370 0 2 613 793 173 7 0 chr11 3680757 3680896 -118162960 + ORR1C2 LTR MaLR 1 140 -238 2 613 383 102 85 0 chr11 3680894 3680953 -118162903 + ORR1C2 LTR MaLR 315 378 0 2 613 538 252 6 123 chr11 3680955 3681118 -118162738 + RSINE1 SINE B4 22 165 0 2 613 470 254 122 11 chr11 3681122 3681361 -118162495 + L1MB3 LINE L1 5299 5567 -612 2 613 633 187 57 114 chr11 3681407 3681592 -118162264 + MT2B LTR ERVL 83 259 -325 2 613 472 231 83 25 chr11 3681592 3681712 -118162144 + B1_Mur3 SINE Alu 3 129 -20 3 613 1041 230 76 6 chr11 3681724 3682052 -118161804 + L1MB3 LINE L1 5794 6144 -39 2 613 404 196 442 42 chr11 3682050 3682248 -118161608 + Lx8 LINE L1 7194 7469 -4 3 613 412 299 79 96 chr11 3682353 3682572 -118161284 - B4A SINE B4 -2 290 76 3 613 332 43 0 80 chr11 3682572 3682622 -118161234 + RMER6D LTR ERVK 1 46 -674 3 613 454 194 34 134 chr11 3682639 3682731 -118161125 + MT2B LTR ERVL 181 260 -341 3 613 368 173 11 90 chr11 3682731 3682820 -118161036 + PB1 SINE Alu 4 85 -42 3 613 1860 139 45 37 chr11 3682773 3683125 -118160731 + RMER6C LTR ERVK 334 688 -2 3 613 273 200 0 0 chr11 3683125 3683172 -118160684 - B4A SINE B4 -245 47 1 3 613 592 248 0 9 chr11 3683250 3683364 -118160492 + B1_Mus2 SINE Alu 1 113 -34 3 613 244 316 62 40 chr11 3683436 3683660 -118160196 + L1MEg LINE L1 1386 1614 -4470 3 613 303 289 77 97 chr11 3683790 3683922 -118159934 + L1MEg LINE L1 1683 1813 -4271 3 613 1497 68 16 0 chr11 3683922 3684112 -118159744 + B2_Mm2 SINE B2 2 194 -1 3 613 303 289 77 97 chr11 3684112 3684186 -118159670 + L1MEg LINE L1 1814 1885 -4199 3 613 949 153 165 21 chr11 3684276 3684470 -118159386 - URR1B DNA MER1_type -3 222 1 3 613 229 306 23 23 chr11 3684560 3684647 -118159209 + MIRc SINE MIR 20 106 -162 3 613 581 212 199 6 chr11 3685074 3685245 -118158611 + B3 SINE B2 2 205 -11 3 613 36 0 0 0 chr11 3686529 3686565 -118157291 + AT_rich Low_complexity Low_complexity 1 36 0 3 613 239 320 0 25 chr11 3686952 3687032 -118156824 + PB1 SINE Alu 24 101 -26 3 613 574 257 79 0 chr11 3687081 3687221 -118156635 - B3 SINE B2 -8 208 58 3 613 919 94 65 7 chr11 3688383 3688406 -118155450 - B1_Mus1 SINE Alu -1 147 126 3 613 387 0 0 0 chr11 3688406 3688449 -118155407 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 613 919 94 65 7 chr11 3688449 3688564 -118155292 - B1_Mus1 SINE Alu -23 125 2 3 613 485 174 168 34 chr11 3688966 3689115 -118154741 + RMER1B Other Other 247 415 -651 3 613 550 182 76 0 chr11 3689101 3689233 -118154623 + RMER1A Other Other 17 158 -872 3 613 2105 109 51 0 chr11 3689875 3690186 -118153670 - ORR1A2 LTR MaLR 0 327 1 3 613 3129 206 93 16 chr11 3690768 3691887 -118151969 + RMER1B Other Other 81 1062 -4 3 613 3774 112 181 9 chr11 3692135 3692780 -118151076 + RMER6A LTR ERVK 1 756 0 3 613 225 246 15 15 chr11 3692938 3693004 -118150852 - PB1D10 SINE Alu -20 97 32 3 613 2333 181 96 9 chr11 3693678 3694145 -118149711 + RMER15 LTR ERVL 52 559 -16 3 613 225 211 16 114 chr11 3694161 3694284 -118149572 + (CA)n Simple_repeat Simple_repeat 2 112 0 3 613 368 40 0 20 chr11 3694330 3694381 -118149475 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 613 1268 284 31 37 chr11 3694452 3694941 -118148915 - L1_Mur3 LINE L1 -21 5859 5374 3 613 1250 54 0 0 chr11 3694957 3695104 -118148752 - B1_Mus2 SINE Alu 0 147 1 3 613 597 274 44 44 chr11 3695109 3695357 -118148499 - L1M2 LINE L1 -1554 4589 4342 3 613 1015 185 54 0 chr11 3695367 3695551 -118148305 - B3 SINE B2 -1 215 22 3 613 284 102 20 0 chr11 3695836 3695885 -118147971 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 613 2387 172 109 8 chr11 3696538 3697303 -118146553 - RMER19B LTR ERVK -16 886 1 3 613 591 275 196 15 chr11 3697343 3697745 -118146111 - L1_Mur3 LINE L1 -1571 4309 3835 3 613 2333 152 33 21 chr11 3698691 3699080 -118144776 + ORR1B1 LTR MaLR 1 394 0 3 613 464 282 15 146 chr11 3699296 3699495 -118144361 + B4A SINE B4 2 174 -118 3 613 342 0 0 0 chr11 3699553 3699591 -118144265 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 613 677 306 112 3 chr11 3699688 3700056 -118143800 + L1ME1 LINE L1 5527 5935 -244 3 613 643 233 54 0 chr11 3700056 3700185 -118143671 + RSINE1 SINE B4 3 138 -27 3 613 350 338 100 50 chr11 3700244 3700484 -118143372 + L1ME1 LINE L1 5928 6179 0 3 613 210 167 23 23 chr11 3701135 3701178 -118142678 + GA-rich Low_complexity Low_complexity 3 45 0 3 613 1146 237 145 16 chr11 3701526 3701843 -118142013 + MTD LTR MaLR 1 358 -61 3 613 510 17 0 0 chr11 3702648 3702707 -118141149 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 613 186 360 25 58 chr11 3702926 3703047 -118140809 - MIRb SINE MIR -82 186 70 3 613 345 217 181 21 chr11 3704076 3704170 -118139686 + PB1D10 SINE Alu 1 109 -8 3 613 248 200 0 0 chr11 3704186 3704226 -118139630 + ID4_ SINE ID 31 70 -13 3 613 533 183 54 43 chr11 3704579 3704707 -118139149 + B1F SINE Alu 13 144 -5 3 613 1194 181 28 5 chr11 3704713 3704924 -118138932 + B3 SINE B2 1 216 0 3 613 389 271 66 22 chr11 3705870 3706006 -118137850 - B1F1 SINE Alu -7 142 1 3 613 219 125 0 0 chr11 3706150 3706190 -118137666 + (TTCCC)n Simple_repeat Simple_repeat 4 43 0 3 613 702 303 69 10 chr11 3706428 3706731 -118137125 - L1M5 LINE L1 -2302 3844 3524 3 613 557 216 18 0 chr11 3706774 3706885 -118136971 - PB1D10 SINE Alu -3 114 2 3 613 621 100 0 0 chr11 3706935 3707025 -118136831 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 613 617 93 0 20 chr11 3707128 3707227 -118136629 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 3 613 875 132 7 14 chr11 3707736 3707874 -118135982 + B1_Mus2 SINE Alu 2 138 -9 3 613 219 69 0 0 chr11 3707875 3707904 -118135952 + (CAAAG)n Simple_repeat Simple_repeat 2 30 0 3 613 280 288 0 0 chr11 3708734 3708800 -118135056 - RMER30 DNA MER1_type 0 202 137 3 613 239 351 26 0 chr11 3708735 3708812 -118135044 + Charlie12 DNA MER1_type 1 79 -2794 3 613 235 253 11 141 chr11 3709096 3709188 -118134668 + B1F2 SINE Alu 1 80 -69 3 613 560 261 14 48 chr11 3710575 3710720 -118133136 + ID_B1 SINE B4 85 224 0 3 613 519 284 151 69 chr11 3711326 3711644 -118132212 + ORR1E LTR MaLR 8 351 -8 3 613 2159 171 166 16 chr11 3712148 3712648 -118131208 + RMER15 LTR ERVL 1 575 0 3 613 613 190 17 63 chr11 3713887 3714061 -118129795 + RNLTR23 LTR ERVK 477 642 0 3 613 362 295 70 21 chr11 3714296 3714438 -118129418 - ORR1E LTR MaLR -210 149 1 3 613 239 313 50 0 chr11 3714700 3714799 -118129057 - MIR3 SINE MIR -23 185 82 3 613 247 312 53 13 chr11 3715128 3715233 -118128623 - PB1D10 SINE Alu -1 119 2 3 613 1047 194 6 0 chr11 3715378 3715553 -118128303 - B3 SINE B2 -32 184 9 3 613 653 275 217 11 chr11 3715556 3716100 -118127756 - L1M4 LINE L1 -2185 3961 3306 3 613 277 160 0 0 chr11 3716417 3716467 -118127389 - L1M4 LINE L1 -3187 2959 2910 3 613 1640 138 84 158 chr11 3716467 3716871 -118126985 + ORR1D1 LTR MaLR 1 374 0 3 613 5561 167 138 48 chr11 3716871 3718129 -118125727 + ORR1D1-int LTR MaLR 1 1370 0 3 613 231 204 36 18 chr11 3718129 3718184 -118125672 + ORR1D1 LTR MaLR 1 56 -311 3 613 342 0 0 0 chr11 3718271 3718309 -118125547 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 613 1325 159 49 0 chr11 3718533 3718759 -118125097 + RLTR42 LTR ERVK 1 237 -2 3 613 401 54 18 0 chr11 3718999 3719055 -118124801 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 613 283 257 0 0 chr11 3719089 3719163 -118124693 + L1MC LINE L1 5730 5803 -2079 3 613 1480 55 39 0 chr11 3720743 3720924 -118122932 + B2_Mm2 SINE B2 2 189 -6 3 613 315 0 0 0 chr11 3720938 3720973 -118122883 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 613 670 201 19 195 chr11 3721068 3721278 -118122578 + MT2A LTR ERVL 6 178 -355 3 613 267 210 158 12 chr11 3721278 3721360 -118122496 + RLTR13D3 LTR ERVK 1 94 -1020 3 613 363 221 135 104 chr11 3721920 3722112 -118121744 + RLTR13D3 LTR ERVK 942 1083 -31 3 613 1047 249 277 58 chr11 3722145 3722675 -118121181 - MTE2b-int LTR MaLR -395 1185 540 3 613 1348 255 81 6 chr11 3722657 3723016 -118120840 - MTE2b-int LTR MaLR -1179 401 16 3 613 704 229 187 37 chr11 3723032 3723358 -118120498 - MTE2b LTR MaLR -4 375 1 3 613 450 0 0 0 chr11 3723984 3724034 -118119822 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 613 462 286 109 124 chr11 3724183 3724522 -118119334 + MT2A LTR ERVL 19 352 -181 3 613 529 212 76 35 chr11 3725270 3725441 -118118415 + MT2A LTR ERVL 356 533 0 3 613 275 325 87 0 chr11 3725453 3725579 -118118277 + L1MC4a LINE L1 7619 7755 -127 3 613 1215 207 154 36 chr11 3725801 3726191 -118117665 + RMER10A LTR ERVL 1 436 -6 3 613 28 29 0 0 chr11 3726214 3726249 -118117607 + AT_rich Low_complexity Low_complexity 1 35 0 3 613 615 191 26 0 chr11 3726705 3726820 -118117036 + RSINE1 SINE B4 12 129 -36 3 613 432 55 0 0 chr11 3726833 3726888 -118116968 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 613 186 103 0 0 chr11 3726889 3726918 -118116938 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 613 1647 42 0 0 chr11 3726952 3727145 -118116711 + B2_Mm1a SINE B2 1 193 0 3 613 470 305 15 30 chr11 3727160 3727295 -118116561 + ID_B1 SINE B4 80 212 -12 3 613 23 33 0 0 chr11 3727315 3727345 -118116511 + AT_rich Low_complexity Low_complexity 1 30 0 3 613 5271 112 53 19 chr11 3727724 3728588 -118115268 - RMER17A2 LTR ERVK -12 894 1 3 613 272 335 93 60 chr11 3728700 3728948 -118114908 - ORR1E LTR MaLR -8 371 104 3 613 1350 298 201 33 chr11 3729007 3729697 -118114159 - MTE-int LTR MaLR -39 1541 736 3 613 1378 313 87 41 chr11 3729709 3730363 -118113493 - MTE-int LTR MaLR -882 698 15 3 613 535 286 61 47 chr11 3730492 3730705 -118113151 - ORR1E LTR MaLR -135 224 9 3 613 1127 250 152 3 chr11 3730848 3731177 -118112679 + MTE2b LTR MaLR 1 378 -1 3 613 268 307 136 7 chr11 3731211 3731365 -118112491 + ERVL-E-int LTR ERVL 4775 4948 -719 3 613 287 327 131 0 chr11 3731900 3732007 -118111849 + LTR16D1 LTR ERVL 345 465 -210 3 613 1275 56 0 6 chr11 3732008 3732169 -118111687 + B2_Mm1a SINE B2 1 160 -33 3 613 1137 72 0 0 chr11 3732169 3732321 -118111535 + (GAAA)n Simple_repeat Simple_repeat 3 154 0 3 613 612 246 71 60 chr11 3732321 3732341 -118111515 + B3A SINE B2 166 184 -14 3 613 855 214 15 20 chr11 3732428 3732624 -118111232 + B2_Mm2 SINE B2 1 195 0 3 613 925 226 20 0 chr11 3732969 3733164 -118110692 + B3 SINE B2 2 200 -16 3 613 420 260 0 0 chr11 3733241 3733318 -118110538 + ID4 SINE ID 6 82 -1 3 613 1415 255 61 22 chr11 3733788 3734630 -118109226 + RMER1B Other Other 1 568 -498 3 613 1484 209 73 23 chr11 3734631 3735184 -118108672 + RMER1A Other Other 2 530 -500 3 613 1936 98 40 120 chr11 3735188 3735537 -118108319 - ORR1A4 LTR MaLR -8 321 1 3 613 2942 171 39 4 chr11 3735537 3736070 -118107786 + RMER1A Other Other 469 1020 -10 3 613 3307 60 5 5 chr11 3736096 3736517 -118107339 - BGLII LTR ERVK 0 421 1 4 613 2534 193 95 7 chr11 3736517 3737190 -118106666 - MYSERV16_I-int LTR ERVK 0 2326 1595 4 613 484 226 123 19 chr11 3737197 3737219 -118106637 + RMER1A Other Other 848 869 -161 4 613 189 0 0 0 chr11 3737219 3737240 -118106616 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 613 484 226 123 19 chr11 3737240 3737379 -118106477 + RMER1A Other Other 870 1025 -5 4 613 1178 241 109 20 chr11 3737429 3737776 -118106080 - MTE2b LTR MaLR 0 379 2 4 613 2226 279 103 55 chr11 3737778 3737833 -118106023 - MTE2b-int LTR MaLR -1 1579 1525 4 613 1407 90 27 0 chr11 3737833 3738021 -118105835 + B2_Mm2 SINE B2 2 194 -1 4 613 2226 279 103 55 chr11 3738021 3738696 -118105160 - MTE2b-int LTR MaLR -56 1524 814 4 613 811 135 17 12 chr11 3738906 3739078 -118104778 + G-rich Low_complexity Low_complexity 3 175 0 4 613 1226 178 0 78 chr11 3739157 3739388 -118104468 - B3 SINE B2 -1 215 3 4 613 1203 268 146 16 chr11 3739414 3739922 -118103934 - L1MB1 LINE L1 -19 6149 5576 4 613 306 250 170 35 chr11 3739958 3740099 -118103757 + RSINE1 SINE B4 5 164 -1 4 613 624 220 8 2 chr11 3740104 3740707 -118103149 + (CA)n Simple_repeat Simple_repeat 1 607 0 4 613 276 329 163 83 chr11 3741483 3741735 -118102121 + MTEa LTR MaLR 108 379 0 4 613 1025 184 130 0 chr11 3743057 3743242 -118100614 + B3 SINE B2 6 214 -2 4 613 2841 161 60 39 chr11 3743559 3744235 -118099621 + RMER13A LTR ERVK 1 860 0 4 613 494 298 64 23 chr11 3744235 3744407 -118099449 + B3A SINE B2 20 198 0 4 613 668 313 20 23 chr11 3744432 3744736 -118099120 + L1MC4 LINE L1 7288 7590 -452 4 613 404 261 57 0 chr11 3744935 3745023 -118098833 + PB1D10 SINE Alu 12 104 -13 4 613 522 0 0 0 chr11 3745023 3745081 -118098775 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 4 613 350 311 159 12 chr11 3745085 3745248 -118098608 + L1MC4 LINE L1 7847 8033 -9 4 613 998 133 188 32 chr11 3745268 3745454 -118098402 + B3 SINE B2 1 215 -1 4 613 665 230 22 6 chr11 3745483 3745662 -118098194 + Lx7 LINE L1 7511 7692 -4 4 613 33 25 0 0 chr11 3745718 3745758 -118098098 + AT_rich Low_complexity Low_complexity 1 40 0 4 613 337 305 290 30 chr11 3745759 3745991 -118097865 + B4A SINE B4 1 292 0 4 613 338 300 42 74 chr11 3746046 3746262 -118097594 + L1MEb LINE L1 680 888 -5182 4 613 183 42 0 0 chr11 3746929 3746953 -118096903 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 613 801 261 209 20 chr11 3747710 3748011 -118095845 + MLT1F LTR MaLR 162 519 -29 4 613 965 205 39 0 chr11 3748578 3748783 -118095073 + B3 SINE B2 2 214 -2 4 613 1483 268 76 24 chr11 3748804 3749304 -118094552 + Lx8 LINE L1 6258 6783 -690 4 613 1169 250 30 21 chr11 3749316 3749651 -118094205 + Lx8 LINE L1 6881 7218 -255 4 613 291 85 0 0 chr11 3750584 3750631 -118093225 + (A)n Simple_repeat Simple_repeat 1 47 0 4 613 488 281 79 0 chr11 3750773 3750912 -118092944 + B4A SINE B4 140 289 -3 4 613 251 93 0 23 chr11 3750931 3750975 -118092881 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 4 613 405 276 211 5 chr11 3751283 3751501 -118092355 + L1M3 LINE L1 4979 5241 -899 4 613 273 301 0 24 chr11 3751546 3751563 -118092293 + B4 SINE B4 70 84 -208 4 613 393 238 0 0 chr11 3751563 3751643 -118092213 + B1_Mus1 SINE Alu 1 80 -68 4 613 264 41 82 0 chr11 3752254 3752303 -118091553 + (CCCCCT)n Simple_repeat Simple_repeat 5 57 0 4 613 3069 65 0 0 chr11 3752607 3752991 -118090865 + L1Md_A LINE L1 6199 6582 0 4 613 1146 77 0 0 chr11 3753346 3753489 -118090367 + B1_Mm SINE Alu 5 147 0 4 613 240 111 0 0 chr11 3753490 3753526 -118090330 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 4 613 225 254 76 45 chr11 3753928 3753994 -118089862 + MER67A LTR ERV1 122 189 -354 4 613 1007 271 88 35 chr11 3754214 3754555 -118089301 + ORR1E LTR MaLR 1 359 0 4 613 538 285 111 87 chr11 3754713 3754827 -118089029 + MER68 LTR ERVL 1 99 -464 4 613 4880 131 78 42 chr11 3754827 3755698 -118088158 + RMER19B LTR ERVK 1 902 0 4 613 538 285 111 87 chr11 3755698 3755871 -118087985 + MER68 LTR ERVL 100 295 -268 4 613 3501 25 2 0 chr11 3756605 3757000 -118086856 + MTA_Mm LTR MaLR 1 396 0 4 613 1414 61 17 6 chr11 3757109 3757290 -118086566 - B2_Mm2 SINE B2 -12 183 1 4 613 930 131 229 0 chr11 3757347 3757530 -118086326 - URR1B DNA MER1_type 0 225 1 4 613 660 302 6 44 chr11 3760231 3760411 -118083445 + B3 SINE B2 19 191 -25 4 613 565 252 20 47 chr11 3760461 3760611 -118083245 + RSINE1 SINE B4 1 146 -19 4 613 1233 54 0 13 chr11 3760757 3760907 -118082949 + B1_Mus1 SINE Alu 1 148 0 4 613 855 208 7 0 chr11 3761165 3761309 -118082547 - B1_Mur1 SINE Alu 0 149 5 4 613 271 291 0 25 chr11 3761684 3761764 -118082092 + B1F1 SINE Alu 3 75 -74 4 613 193 272 103 37 chr11 3762784 3762891 -118080965 + L2b LINE L2 3261 3374 -1 4 613 286 240 19 37 chr11 3763890 3763998 -118079858 + (CGGGG)n Simple_repeat Simple_repeat 2 107 0 4 613 193 293 53 13 chr11 3764135 3764211 -118079645 - L2b LINE L2 -48 3327 3249 4 613 309 285 175 19 chr11 3764243 3764397 -118079459 + MIRb SINE MIR 47 224 -44 4 613 1306 70 12 0 chr11 3764920 3765091 -118078765 + B2_Mm1t SINE B2 7 179 -14 4 613 397 102 313 61 chr11 3765104 3765219 -118078637 + B2_Mm2 SINE B2 47 190 -5 4 613 365 295 9 0 chr11 3765224 3765329 -118078527 - PB1D10 SINE Alu -10 107 2 4 613 248 119 24 0 chr11 3765398 3765440 -118078416 + L1MC5 LINE L1 6749 6791 -1170 4 613 726 226 47 47 chr11 3765459 3765649 -118078207 + B3 SINE B2 27 216 0 4 613 247 206 70 180 chr11 3765662 3765777 -118078079 + L1MC5 LINE L1 6788 6882 -1079 4 613 922 224 84 137 chr11 3765777 3766192 -118077664 - RLTR9C LTR ERVK 0 393 1 4 613 247 206 70 180 chr11 3766192 3766348 -118077508 + L1MC5 LINE L1 6883 7029 -932 4 613 713 160 215 17 chr11 3766660 3766832 -118077024 - B3 SINE B2 0 216 11 4 613 554 253 95 7 chr11 3766922 3767069 -118076787 + RSINE1 SINE B4 2 161 -4 4 613 554 259 73 15 chr11 3767400 3767537 -118076319 - B1F1 SINE Alu -2 147 3 4 613 252 273 26 35 chr11 3767556 3767670 -118076186 + L1MC5 LINE L1 7518 7630 -331 4 613 329 285 100 29 chr11 3767697 3767831 -118076025 + MLT1A LTR MaLR 40 194 -273 4 613 519 223 26 9 chr11 3767831 3767944 -118075912 + PB1D9 SINE Alu 3 117 -3 4 613 1222 28 14 7 chr11 3767952 3768096 -118075760 + B1_Mus1 SINE Alu 4 148 0 4 613 395 227 108 43 chr11 3768096 3768315 -118075541 + MLT1A LTR MaLR 177 408 -59 4 613 1784 164 105 8 chr11 3768316 3768679 -118075177 - RMER1B Other Other 0 1066 669 4 613 568 43 0 0 chr11 3768679 3768749 -118075107 + B1_Mur4 SINE Alu 73 142 -8 4 613 180 0 0 0 chr11 3768954 3768974 -118074882 + (A)n Simple_repeat Simple_repeat 1 20 0 4 613 286 220 0 0 chr11 3769021 3769071 -118074785 + ID2 SINE ID 6 55 -28 4 613 346 292 18 0 chr11 3769077 3769190 -118074666 + L1M3 LINE L1 5617 5731 -449 4 613 593 234 103 23 chr11 3769195 3769409 -118074447 - RMER1B Other Other -398 668 438 4 613 1375 95 16 16 chr11 3769415 3769607 -118074249 - B2_Mm2 SINE B2 -3 192 1 4 613 364 156 16 0 chr11 3769608 3769672 -118074184 + MLT1B LTR MaLR 324 388 -2 4 613 386 229 60 0 chr11 3770002 3770093 -118073763 + B1F2 SINE Alu 3 97 -50 4 613 669 149 61 42 chr11 3770135 3770289 -118073567 - ORR1C2 LTR MaLR -223 147 1 4 613 198 0 0 0 chr11 3770423 3770445 -118073411 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 4 613 467 308 104 40 chr11 3770447 3770697 -118073159 - B4 SINE B4 -25 267 2 4 613 349 307 100 65 chr11 3770828 3771058 -118072798 - B4 SINE B4 -10 282 45 4 613 1078 262 91 11 chr11 3771060 3771323 -118072533 - B4 SINE B4 -3 289 6 4 613 755 185 105 7 chr11 3771354 3771506 -118072350 + B3 SINE B2 1 167 -49 4 613 553 95 0 0 chr11 3771504 3771578 -118072278 - B1_Mus1 SINE Alu -72 76 3 4 613 2390 186 203 44 chr11 3771578 3772214 -118071642 - RMER19A LTR ERVK 0 737 1 4 613 284 250 6 18 chr11 3772223 3772386 -118071470 + (TA)n Simple_repeat Simple_repeat 1 161 0 4 613 541 286 7 20 chr11 3772789 3772939 -118070917 + B1F SINE Alu 2 149 0 4 613 219 257 14 14 chr11 3773261 3773332 -118070524 + GA-rich Low_complexity Low_complexity 1 71 0 4 613 198 0 0 0 chr11 3773530 3773552 -118070304 + (T)n Simple_repeat Simple_repeat 1 22 0 4 613 216 319 0 113 chr11 3774028 3774134 -118069722 + ID_B1 SINE B4 82 175 -49 4 613 359 312 18 9 chr11 3774041 3774151 -118069705 + PB1 SINE Alu 12 122 -5 4 613 1266 27 7 0 chr11 3774313 3774459 -118069397 - B1_Mus1 SINE Alu -1 147 1 4 613 240 35 0 0 chr11 3774614 3774643 -118069213 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 613 373 343 35 53 chr11 3775169 3775397 -118068459 - ORR1E LTR MaLR -8 351 128 4 613 207 0 0 0 chr11 3775426 3775449 -118068407 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 4 613 1458 68 10 10 chr11 3775477 3775671 -118068185 + B2_Mm2 SINE B2 2 195 0 4 613 617 239 0 6 chr11 3775946 3776127 -118067729 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 613 629 101 10 20 chr11 3776138 3776239 -118067617 - B1_Mus2 SINE Alu -46 101 2 4 613 261 296 9 67 chr11 3776715 3776820 -118067036 + L2a LINE L2 3294 3392 -34 4 613 700 246 29 64 chr11 3776835 3777039 -118066817 - B3A SINE B2 -1 197 1 4 613 243 298 106 62 chr11 3777334 3777495 -118066361 + ORR1E LTR MaLR 27 194 -165 4 613 325 280 131 0 chr11 3777711 3777818 -118066038 - B1_Mur1 SINE Alu -22 127 7 4 613 238 290 40 70 chr11 3777767 3777867 -118065989 - B4 SINE B4 -149 143 47 4 613 285 259 37 0 chr11 3777946 3778027 -118065829 + B1F SINE Alu 27 110 -39 4 613 198 0 0 0 chr11 3778044 3778066 -118065790 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 613 270 0 0 0 chr11 3778066 3778095 -118065761 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 613 257 221 291 0 chr11 3778356 3778442 -118065414 + B1F2 SINE Alu 1 111 -38 5 613 798 298 23 0 chr11 3779500 3779715 -118064141 + ID_B1 SINE B4 1 220 -4 5 613 539 208 97 30 chr11 3779729 3779863 -118063993 + RSINE1 SINE B4 9 151 -14 5 613 338 154 15 15 chr11 3780323 3780389 -118063467 - PB1D9 SINE Alu -54 66 1 5 613 685 79 402 0 chr11 3780392 3780556 -118063300 - MTB_Mm LTR MaLR -166 230 1 5 613 496 204 0 34 chr11 3780599 3780727 -118063129 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 5 613 3201 38 5 2 chr11 3780727 3781122 -118062734 - MTA_Mm LTR MaLR 0 396 1 5 613 496 204 0 34 chr11 3781122 3781140 -118062716 + (TGGA)n Simple_repeat Simple_repeat 4 20 0 5 613 1059 87 37 6 chr11 3781140 3781302 -118062554 - RMER16 LTR ERVK 0 533 367 5 613 586 39 0 0 chr11 3781297 3781375 -118062481 - RMER16 LTR ERVK -324 209 132 5 613 227 311 103 49 chr11 3782062 3782285 -118061571 + MIR SINE MIR 18 252 -10 5 613 309 256 0 60 chr11 3782293 3782376 -118061480 - ID2 SINE ID -4 79 2 5 613 452 317 84 16 chr11 3782738 3782984 -118060872 + ORR1D1 LTR MaLR 111 369 -1 5 613 663 255 19 6 chr11 3782995 3783157 -118060699 - RSINE1 SINE B4 0 165 2 5 613 198 103 0 0 chr11 3784024 3784053 -118059803 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 613 269 303 59 29 chr11 3784054 3784258 -118059598 + L1_Mur1 LINE L1 2074 2283 -3603 5 613 658 311 95 6 chr11 3784702 3785019 -118058837 + Lx8 LINE L1 2662 3006 -2874 5 613 673 265 10 42 chr11 3785026 3785061 -118058795 + B3 SINE B2 17 49 -167 5 613 1856 138 73 31 chr11 3785061 3785443 -118058413 - RMER10B LTR ERVL 0 398 1 5 613 673 265 10 42 chr11 3785443 3785600 -118058256 + B3 SINE B2 50 203 -13 5 613 1255 81 0 41 chr11 3785650 3785844 -118058012 + B2_Mm2 SINE B2 2 187 -8 5 613 548 294 111 66 chr11 3785850 3786285 -118057571 + Lx8 LINE L1 5350 5841 -1632 5 613 573 236 31 0 chr11 3786356 3786483 -118057373 + ID_B1 SINE B4 86 216 -8 5 613 528 68 0 0 chr11 3786483 3786556 -118057300 + (CCA)n Simple_repeat Simple_repeat 1 73 0 5 613 788 254 32 5 chr11 3786559 3786745 -118057111 + B3 SINE B2 2 192 -24 5 613 256 324 82 69 chr11 3786750 3786909 -118056947 + Lx8 LINE L1 7025 7185 -459 5 613 445 217 0 0 chr11 3788591 3788674 -118055182 + ID4_ SINE ID 1 83 0 5 613 419 155 35 35 chr11 3788755 3788842 -118055014 - B1_Mur4 SINE Alu -1 149 63 5 613 392 183 0 0 chr11 3788842 3788913 -118054943 - RLTR28B LTR ERVL -283 198 128 5 613 276 30 0 0 chr11 3789948 3789981 -118053875 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 5 613 732 228 0 27 chr11 3790252 3790317 -118053539 - B1_Mur1 SINE Alu -2 147 86 5 613 2925 83 2 0 chr11 3790317 3790716 -118053140 + MTB LTR MaLR 1 400 0 5 613 732 228 0 27 chr11 3790716 3790799 -118053057 - B1_Mur1 SINE Alu -64 85 3 5 613 3293 104 19 4 chr11 3790980 3791492 -118052364 + RLTR28 LTR ERVL 1 520 -4 5 613 855 133 146 0 chr11 3791640 3791805 -118052051 + B2_Mm1a SINE B2 1 189 -4 5 613 363 187 66 13 chr11 3791964 3792040 -118051816 + B1F SINE Alu 15 94 -55 5 613 547 89 0 32 chr11 3792051 3792144 -118051712 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 5 613 304 200 154 0 chr11 3792287 3792352 -118051504 + RMER30 DNA MER1_type 8 82 -120 5 613 515 204 305 0 chr11 3792482 3792649 -118051207 + ID_B1 SINE B4 4 221 -3 5 613 1397 78 16 0 chr11 3792678 3792870 -118050986 - B2_Mm2 SINE B2 0 195 1 5 613 1561 241 54 0 chr11 3793163 3793553 -118050303 - MTD LTR MaLR -8 411 1 5 613 203 0 37 0 chr11 3793874 3793901 -118049955 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 613 652 203 15 0 chr11 3793949 3794082 -118049774 - ID_B1 SINE B4 -8 216 82 5 613 228 67 0 0 chr11 3795839 3795869 -118047987 + (CCCCCT)n Simple_repeat Simple_repeat 6 35 0 5 613 495 168 89 45 chr11 3797714 3797826 -118046030 + PB1D10 SINE Alu 1 117 0 5 613 256 315 0 43 chr11 3798590 3798683 -118045173 - B1F1 SINE Alu -59 90 2 5 613 326 171 231 19 chr11 3798688 3798872 -118044984 - MTD LTR MaLR -3 416 130 5 613 923 254 5 5 chr11 3799136 3799338 -118044518 + B3 SINE B2 15 216 0 5 613 235 277 28 57 chr11 3799397 3799411 -118044445 - ZP3AR Satellite Satellite -96 100 73 5 613 265 196 18 18 chr11 3799411 3799468 -118044388 - ID4 SINE ID -25 58 2 5 613 235 277 28 57 chr11 3799468 3799500 -118044356 - ZP3AR Satellite Satellite -96 72 1 5 613 420 202 53 0 chr11 3799484 3799578 -118044278 - B1_Mur2 SINE Alu -8 141 43 5 613 458 247 71 61 chr11 3799827 3800025 -118043831 - L1MD LINE L1 -481 5761 5562 5 613 527 286 72 19 chr11 3800315 3800522 -118043334 - Lx8 LINE L1 -70 7403 7186 5 613 31 44 0 0 chr11 3800806 3800851 -118043005 + AT_rich Low_complexity Low_complexity 1 45 0 5 613 567 81 0 0 chr11 3800969 3801055 -118042801 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 76 285 75 58 29 chr11 3801057 3801126 -118042730 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 5 614 423 297 0 41 chr11 3801823 3801946 -118041910 - B1F SINE Alu -20 129 12 5 614 432 0 0 0 chr11 3802135 3802183 -118041673 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 614 742 81 66 3 chr11 3802503 3802630 -118041226 - B1_Mus2 SINE Alu -1 148 8 5 614 531 189 21 0 chr11 3802913 3803008 -118040848 - ID_B1 SINE B4 -21 203 107 5 614 238 256 73 49 chr11 3802941 3803023 -118040833 - PB1D7 SINE Alu -23 97 14 5 614 195 247 141 33 chr11 3803549 3803641 -118040215 - MIRc SINE MIR -165 103 2 5 614 1057 268 28 97 chr11 3803695 3803780 -118040076 + MTE2b LTR MaLR 10 85 -294 5 614 1147 49 14 0 chr11 3803780 3803924 -118039932 - B1_Mus2 SINE Alu 0 147 2 5 614 1057 268 28 97 chr11 3803924 3804230 -118039626 + MTE2b LTR MaLR 86 374 -5 5 614 1382 296 78 37 chr11 3804238 3804803 -118039053 + Tigger7 DNA MER2_type 54 641 -1850 5 614 187 281 0 119 chr11 3805055 3805164 -118038692 - MIR SINE MIR -81 127 32 5 614 360 119 0 0 chr11 3805324 3805383 -118038473 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 614 505 274 4 186 chr11 3805904 3806178 -118037678 + ID_B1 SINE B4 1 224 0 5 614 464 274 6 104 chr11 3808592 3808755 -118035101 - ID_B1 SINE B4 -1 223 77 5 614 234 0 0 0 chr11 3808779 3808805 -118035051 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 614 376 246 252 8 chr11 3809695 3809826 -118034030 - RSINE1 SINE B4 0 165 3 5 614 425 265 14 35 chr11 3809826 3809967 -118033889 - B1F1 SINE Alu -11 138 1 5 614 329 221 119 46 chr11 3809976 3810085 -118033771 - PB1D10 SINE Alu 0 117 1 5 614 1248 27 0 0 chr11 3811722 3811869 -118031987 + B1_Mus2 SINE Alu 1 147 0 5 614 201 108 0 0 chr11 3811871 3811908 -118031948 + (A)n Simple_repeat Simple_repeat 1 37 0 5 614 335 212 0 15 chr11 3811917 3811984 -118031872 + PB1D10 SINE Alu 32 97 -20 5 614 351 0 0 0 chr11 3815051 3815090 -118028766 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 614 913 172 102 0 chr11 3815294 3815480 -118028376 - B3 SINE B2 -11 205 1 5 614 836 230 18 105 chr11 3815501 3815690 -118028166 - B3 SINE B2 -8 208 34 5 614 1082 74 109 18 chr11 3815690 3815855 -118028001 - B2_Mm2 SINE B2 -14 181 2 5 614 836 230 18 105 chr11 3815855 3815893 -118027963 - B3 SINE B2 -183 33 1 5 614 743 279 51 51 chr11 3816376 3816507 -118027349 - ID_B1 SINE B4 -8 216 92 5 614 1238 103 38 0 chr11 3816507 3816692 -118027164 - B2_Mm2 SINE B2 -2 193 2 5 614 743 279 51 51 chr11 3816692 3816775 -118027081 - ID_B1 SINE B4 -133 91 2 5 614 293 261 14 0 chr11 3816807 3816876 -118026980 - ID4 SINE ID -13 70 1 5 614 25 0 0 0 chr11 3818210 3818235 -118025621 + AT_rich Low_complexity Low_complexity 1 25 0 5 614 1019 23 8 0 chr11 3818309 3818439 -118025417 + B1_Mus1 SINE Alu 17 147 -1 5 614 314 176 217 11 chr11 3818477 3818569 -118025287 + PB1D10 SINE Alu 2 112 -5 5 614 362 239 16 49 chr11 3818593 3818716 -118025140 + Charlie5 DNA MER1_type 2423 2541 -83 5 614 635 153 150 24 chr11 3818863 3819030 -118024826 + B2_Mm2 SINE B2 7 194 -1 5 614 423 0 0 0 chr11 3819816 3819863 -118023993 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 614 448 199 44 12 chr11 3819863 3819989 -118023867 - B3A SINE B2 -53 163 33 5 614 827 176 7 0 chr11 3820017 3820165 -118023691 - B1_Mur4 SINE Alu 0 150 2 5 614 423 56 0 0 chr11 3820478 3820532 -118023324 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 5 614 568 286 132 26 chr11 3820652 3820993 -118022863 + MTEb LTR MaLR 3 379 0 5 614 878 86 0 15 chr11 3821142 3821272 -118022584 + B1_Mur4 SINE Alu 22 149 -1 5 614 1463 234 145 11 chr11 3822690 3823160 -118020696 + MT2A LTR ERVL 1 533 0 5 614 268 309 96 0 chr11 3823954 3824048 -118019808 + MER81 DNA AcHobo 8 110 -4 5 614 258 293 67 0 chr11 3824190 3824265 -118019591 - ID4_ SINE ID -3 80 1 5 614 270 291 0 85 chr11 3824297 3824391 -118019465 - MER5B DNA MER1_type -70 108 23 5 614 254 270 0 0 chr11 3825498 3825572 -118018284 + G-rich Low_complexity Low_complexity 1 74 0 5 614 872 171 7 0 chr11 3826518 3826664 -118017192 - B1_Mur3 SINE Alu 0 149 3 5 614 1044 133 0 106 chr11 3827110 3827328 -118016528 + B2_Mm2 SINE B2 1 195 0 5 614 244 302 57 23 chr11 3827904 3827992 -118015864 - MIRc SINE MIR -63 205 115 5 614 277 231 0 0 chr11 3828716 3828768 -118015088 + B1F1 SINE Alu 1 52 -97 5 614 790 277 43 5 chr11 3828921 3829128 -118014728 - ID_B1 SINE B4 -2 222 8 5 614 1996 198 49 14 chr11 3829336 3829766 -118014090 + MT2A LTR ERVL 4 448 -85 6 614 949 161 166 0 chr11 3829810 3830003 -118013853 + URR1B DNA MER1_type 1 225 0 6 614 333 0 0 0 chr11 3830036 3830073 -118013783 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 614 298 248 18 18 chr11 3831825 3831936 -118011920 + C-rich Low_complexity Low_complexity 3 113 0 6 614 252 0 0 0 chr11 3832371 3832399 -118011457 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 614 351 0 0 0 chr11 3832399 3832438 -118011418 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 614 260 226 224 12 chr11 3832767 3832852 -118011004 + PB1 SINE Alu 14 116 -11 6 614 232 343 0 47 chr11 3832857 3832893 -118010963 + polypurine Low_complexity Low_complexity 4 39 0 6 614 412 255 55 36 chr11 3832893 3833003 -118010853 + PB1D7 SINE Alu 1 112 -8 6 614 232 343 0 47 chr11 3833003 3833073 -118010783 + polypurine Low_complexity Low_complexity 40 105 0 6 614 233 286 0 0 chr11 3833016 3833072 -118010784 + GA-rich Low_complexity Low_complexity 4 59 0 6 614 2516 111 17 0 chr11 3833142 3833503 -118010353 - RLTR14 LTR ERV1 0 382 16 6 614 869 271 116 36 chr11 3833480 3833843 -118010013 + LTR65 LTR ERV1 54 445 -224 6 614 1135 83 0 0 chr11 3834198 3834342 -118009514 + B1_Mus1 SINE Alu 2 145 -3 6 614 261 0 0 0 chr11 3834342 3834371 -118009485 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 614 1372 87 11 0 chr11 3834380 3834563 -118009293 + B2_Mm1t SINE B2 1 185 -8 6 614 652 259 109 66 chr11 3834597 3834944 -118008912 - RMER10A LTR ERVL -16 426 65 6 614 587 248 7 28 chr11 3835364 3835509 -118008347 + B1F SINE Alu 1 142 -7 6 614 318 311 66 0 chr11 3835561 3835667 -118008189 - PB1D7 SINE Alu -7 113 1 6 614 324 0 0 0 chr11 3835762 3835798 -118008058 + (CACG)n Simple_repeat Simple_repeat 3 38 0 6 614 254 270 44 22 chr11 3835863 3835954 -118007902 - L1MA9 LINE L1 -2 6310 6218 6 614 195 139 0 0 chr11 3836429 3836465 -118007391 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 614 1349 78 39 0 chr11 3836783 3836962 -118006894 + B2_Mm2 SINE B2 2 187 -8 6 614 274 268 90 45 chr11 3838486 3838619 -118005237 + MTD LTR MaLR 3 141 -278 6 614 345 276 69 0 chr11 3838651 3838767 -118005089 + L1MC3 LINE L1 6638 6761 -1024 6 614 1102 189 29 15 chr11 3838771 3838975 -118004881 + B3 SINE B2 5 211 -5 6 614 365 277 0 19 chr11 3839013 3839116 -118004740 + PB1D10 SINE Alu 1 101 -16 6 614 293 308 34 40 chr11 3839216 3839392 -118004464 - L1MC3 LINE L1 -705 7080 6906 6 614 457 190 99 10 chr11 3839529 3839630 -118004226 - PB1D10 SINE Alu -7 110 1 6 614 361 244 65 29 chr11 3839636 3839775 -118004081 - L1M5 LINE L1 -1383 4760 4617 6 614 282 167 0 0 chr11 3839800 3839848 -118004008 - ID_B1 SINE B4 -3 221 174 6 614 241 238 85 0 chr11 3839802 3839881 -118003975 - PB1D10 SINE Alu -5 115 25 6 614 441 0 0 0 chr11 3839889 3839938 -118003918 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 614 1313 111 5 5 chr11 3840092 3840283 -118003573 - B2_Mm1t SINE B2 -1 192 2 6 614 225 318 16 0 chr11 3840325 3840388 -118003468 + MER33 DNA MER1_type 1 64 -260 6 614 1203 55 7 0 chr11 3840388 3840534 -118003322 + B1_Mm SINE Alu 1 147 0 6 614 577 229 8 8 chr11 3840645 3840764 -118003092 + PB1D9 SINE Alu 1 119 -1 6 614 308 250 14 42 chr11 3840764 3840835 -118003021 + B4A SINE B4 222 290 -2 6 614 492 200 0 0 chr11 3840837 3840942 -118002914 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 614 959 251 92 7 chr11 3840944 3841225 -118002631 - LTR68 LTR ERV1 -43 697 393 6 614 1191 278 87 24 chr11 3841312 3841394 -118002462 - RLTR16 LTR ERVK -16 489 411 6 614 342 0 0 0 chr11 3841394 3841432 -118002424 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 614 1191 278 87 24 chr11 3841432 3841809 -118002047 - RLTR16 LTR ERVK -95 410 2 6 614 361 213 75 0 chr11 3842215 3842301 -118001555 - L1MA4 LINE L1 -376 5936 5847 6 614 2590 151 10 0 chr11 3842304 3842694 -118001162 + ORR1B1 LTR MaLR 1 394 0 6 614 2051 173 22 8 chr11 3842694 3843062 -118000794 + ORR1B1-int LTR MaLR 1 373 -1590 6 614 207 88 0 0 chr11 3843065 3843099 -118000757 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6 614 1369 31 0 0 chr11 3843099 3843259 -118000597 - B2_Mm1t SINE B2 -33 160 1 6 614 869 129 0 160 chr11 3843263 3843331 -118000525 + ORR1B1-int LTR MaLR 397 455 -1508 6 614 1505 82 0 5 chr11 3843331 3843526 -118000330 + B2_Mm2 SINE B2 1 194 -1 6 614 869 157 17 131 chr11 3843526 3843681 -118000175 + ORR1B1-int LTR MaLR 456 689 -891 6 614 331 200 139 12 chr11 3843686 3843772 -118000084 + ORR1A3-int LTR MaLR 544 640 -1323 6 614 244 231 215 0 chr11 3843781 3843814 -118000042 + ORR1A3-int LTR MaLR 559 617 -1346 6 614 807 143 51 120 chr11 3843814 3843989 -117999867 + MT2B LTR ERVL 1 163 -438 6 614 9190 97 52 5 chr11 3844005 3845305 -117998551 + Lx3B LINE L1 5605 6965 -8 6 614 293 47 23 0 chr11 3845305 3845348 -117998508 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 6 614 326 229 75 14 chr11 3845351 3845373 -117998483 + ORR1A3-int LTR MaLR 696 808 -1155 6 614 539 162 50 0 chr11 3845373 3845386 -117998470 + MT2B LTR ERVL 154 171 -430 6 614 514 200 133 0 chr11 3845386 3845491 -117998365 + B1_Mus2 SINE Alu 3 121 -26 6 614 2160 116 15 142 chr11 3845491 3845954 -117997902 + RLTR9F LTR ERVK 1 404 -11 6 614 877 211 137 62 chr11 3845963 3846321 -117997535 + ETnERV2-int LTR ERVK 2 386 -2928 6 614 5312 122 65 35 chr11 3846337 3847240 -117996616 + ETnERV2-int LTR ERVK 1071 2012 -5394 6 614 1110 71 0 7 chr11 3847240 3847381 -117996475 + B1_Mus2 SINE Alu 1 140 -7 6 614 5312 122 65 35 chr11 3847381 3847418 -117996438 + ETnERV2-int LTR ERVK 2013 2039 -5367 6 614 2416 85 8 26 chr11 3847418 3847775 -117996081 + RLTR13D1 LTR ERVK 381 892 -66 6 614 871 121 0 0 chr11 3847775 3847899 -117995957 + ETnERV2-int LTR ERVK 2121 2244 -5162 6 614 6998 137 34 23 chr11 3847890 3849149 -117994707 + ETnERV2-int LTR ERVK 2494 3766 -3640 6 614 8343 43 7 5 chr11 3849149 3850362 -117993494 - L1Md_F2 LINE L1 0 6582 5370 6 614 10001 60 0 0 chr11 3850362 3851610 -117992246 + L1Md_F2 LINE L1 4109 5356 -527 6 614 279 0 0 0 chr11 3852929 3852960 -117990896 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 614 7300 131 13 0 chr11 3852962 3854013 -117989843 + ETnERV2-int LTR ERVK 3758 4822 -2584 6 614 2685 190 85 96 chr11 3854001 3855238 -117988618 + ETnERV2-int LTR ERVK 2356 3137 -1707 6 614 421 125 27 14 chr11 3855457 3855530 -117988326 + ETnERV2-int LTR ERVK 7331 7404 -2 6 614 1096 205 39 117 chr11 3855531 3856017 -117987839 + RLTR9F LTR ERVK 1 434 -3 6 614 5607 107 60 18 chr11 3856030 3856953 -117986903 + ORR1A3-int LTR MaLR 846 1757 -206 6 614 245 53 53 0 chr11 3856953 3856991 -117986865 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 6 614 1177 68 0 0 chr11 3856992 3857139 -117986717 - B1_Mus2 SINE Alu 0 147 1 6 614 621 144 126 0 chr11 3857142 3857253 -117986603 + RMER4B LTR ERVK 459 583 -2 6 614 270 154 0 0 chr11 3857313 3857352 -117986504 - B1_Mus1 SINE Alu -109 39 1 6 614 2082 188 9 42 chr11 3857555 3858011 -117985845 - BGLII_B LTR ERVK 0 441 1 6 614 212 317 75 98 chr11 3858103 3858236 -117985620 + MIR SINE MIR 14 143 -65 6 614 3351 32 25 0 chr11 3858257 3858658 -117985198 + RLTR10A LTR ERVK 1 411 0 6 614 210 71 0 0 chr11 3859077 3859105 -117984751 + (T)n Simple_repeat Simple_repeat 1 28 0 6 614 770 238 105 11 chr11 3859504 3859695 -117984161 + B3 SINE B2 1 209 -7 6 614 744 125 33 8 chr11 3859715 3859836 -117984020 - B1_Mur3 SINE Alu 0 149 26 6 614 191 188 0 20 chr11 3860186 3860235 -117983621 + (TATG)n Simple_repeat Simple_repeat 3 50 0 6 614 332 314 111 52 chr11 3860562 3860852 -117983004 - RSINE1 SINE B4 -11 281 1 6 614 207 0 0 0 chr11 3860950 3860973 -117982883 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 614 300 27 0 0 chr11 3860973 3861009 -117982847 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 614 396 294 112 79 chr11 3861092 3861262 -117982594 + RMER21B LTR ERV1 347 524 -318 6 614 1129 88 0 0 chr11 3861262 3861409 -117982447 - B1_Mus2 SINE Alu 0 147 1 6 614 396 294 112 79 chr11 3861409 3861452 -117982404 + RMER21B LTR ERV1 525 567 -275 6 614 315 297 91 106 chr11 3861538 3861802 -117982054 - RMER2 LTR ERV1 0 567 308 6 614 720 217 14 0 chr11 3862095 3862238 -117981618 - B1_Mus2 SINE Alu -2 145 1 6 614 238 278 6 63 chr11 3862249 3862346 -117981510 - B4A SINE B4 -72 220 133 6 614 689 159 9 0 chr11 3862415 3862528 -117981328 - B1_Mus2 SINE Alu 0 147 34 6 614 380 262 0 12 chr11 3862944 3863029 -117980827 - B4A SINE B4 -207 85 2 6 614 460 231 67 0 chr11 3863045 3863149 -117980707 - PB1D10 SINE Alu 0 117 7 6 614 334 169 214 0 chr11 3863180 3863269 -117980587 - B1_Mur2 SINE Alu 0 149 42 6 614 556 191 43 43 chr11 3863564 3863679 -117980177 + B1_Mus2 SINE Alu 1 115 -32 6 614 189 319 29 0 chr11 3864303 3864372 -117979484 - L2b LINE L2 -38 3337 3267 6 614 1106 128 5 31 chr11 3865368 3865561 -117978295 - B2_Mm2 SINE B2 -7 188 1 6 614 4733 159 140 8 chr11 3865570 3865730 -117978126 - Lx9 LINE L1 -6 7638 7438 6 614 306 0 0 0 chr11 3865730 3865764 -117978092 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 614 4733 159 140 8 chr11 3865764 3866629 -117977227 - Lx9 LINE L1 -207 7437 6477 6 614 455 260 19 0 chr11 3866639 3866743 -117977113 - PB1D10 SINE Alu -11 106 1 6 614 538 267 123 0 chr11 3866801 3866947 -117976909 - RSINE1 SINE B4 0 165 2 6 614 314 312 154 13 chr11 3867425 3867581 -117976275 + MER106A DNA MER1_type 1 178 -58 6 614 485 245 174 13 chr11 3867722 3867871 -117975985 - B3 SINE B2 0 195 23 6 614 226 281 152 30 chr11 3867881 3868013 -117975843 + MIR SINE MIR 79 230 -38 6 614 273 197 0 0 chr11 3868657 3868728 -117975128 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 614 333 238 12 24 chr11 3868790 3868872 -117974984 - ID4_ SINE ID 0 83 3 6 614 341 276 63 87 chr11 3868884 3868930 -117974926 - PB1 SINE Alu -3 124 81 6 614 1490 58 21 0 chr11 3868930 3869121 -117974735 - B2_Mm2 SINE B2 0 195 1 6 614 398 262 0 0 chr11 3869121 3869201 -117974655 - PB1D10 SINE Alu -37 80 1 6 614 182 239 153 61 chr11 3870095 3870193 -117973663 + L4 LINE RTE 975 1081 -948 6 614 194 0 39 0 chr11 3870249 3870275 -117973581 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 614 511 149 193 18 chr11 3871906 3872015 -117971841 - B1_Mus1 SINE Alu -2 146 19 6 614 394 143 112 212 chr11 3872017 3872177 -117971679 - B1_Mur2 SINE Alu -3 146 3 6 614 602 243 0 0 chr11 3872330 3872437 -117971419 - PB1D10 SINE Alu -7 110 4 7 614 800 162 43 0 chr11 3873791 3873951 -117969905 - URR1B DNA MER1_type 0 225 59 7 614 214 312 0 0 chr11 3877635 3877715 -117966141 + GA-rich Low_complexity Low_complexity 1 80 0 7 614 207 0 0 0 chr11 3877722 3877745 -117966111 + (GGA)n Simple_repeat Simple_repeat 1 23 0 7 614 462 190 22 22 chr11 3879543 3879642 -117964214 - MTB_Mm LTR MaLR -2 419 307 7 614 1992 152 45 0 chr11 3879984 3880314 -117963542 - MTB_Mm LTR MaLR -62 345 1 7 614 1542 235 156 124 chr11 3880314 3880866 -117962990 - MTB_Mm-int LTR MaLR 0 1258 694 7 614 1235 61 0 0 chr11 3880866 3881014 -117962842 + B1_Mus1 SINE Alu 1 148 0 7 614 1542 235 156 124 chr11 3881014 3881313 -117962543 - MTB_Mm-int LTR MaLR -565 693 380 7 614 866 135 49 14 chr11 3881306 3881449 -117962407 - B1_Mus1 SINE Alu 0 148 1 7 614 1382 214 94 28 chr11 3881449 3881807 -117962049 - MTB_Mm-int LTR MaLR -873 385 4 7 614 1788 195 42 83 chr11 3881812 3882157 -117961699 - MTB_Mm LTR MaLR -8 413 97 7 614 717 150 18 0 chr11 3882157 3882270 -117961586 - PB1D9 SINE Alu -5 115 1 7 614 1788 195 42 83 chr11 3882270 3882355 -117961501 - MTB_Mm LTR MaLR -325 96 1 7 614 208 211 0 0 chr11 3883572 3883610 -117960246 + G-rich Low_complexity Low_complexity 1 38 0 7 614 24 0 0 0 chr11 3883781 3883805 -117960051 + GC_rich Low_complexity Low_complexity 1 24 0 7 614 303 203 31 0 chr11 3884686 3884750 -117959106 - MIRc SINE MIR -134 134 69 7 614 302 0 26 0 chr11 3884774 3884812 -117959044 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 614 245 283 33 0 chr11 3885511 3885571 -117958285 - MER67A LTR ERV1 -283 260 199 7 614 594 39 0 0 chr11 3885804 3885881 -117957975 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 614 351 0 0 0 chr11 3886121 3886160 -117957696 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 614 396 277 61 0 chr11 3886195 3886306 -117957550 + B1F1 SINE Alu 2 116 -1 7 614 225 108 0 0 chr11 3886306 3886343 -117957513 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 614 219 325 7 109 chr11 3886343 3886369 -117957487 + B1_Mm SINE Alu 99 124 -23 7 614 1368 60 33 0 chr11 3886477 3886659 -117957197 + B2_Mm2 SINE B2 8 195 0 7 614 635 241 21 21 chr11 3887025 3887169 -117956687 - RSINE1 SINE B4 -19 146 3 7 614 710 238 104 0 chr11 3887544 3887708 -117956148 - MTD-int LTR MaLR -764 494 314 7 614 1259 112 17 0 chr11 3887726 3887904 -117955952 - B2_Mm2 SINE B2 -11 184 4 7 614 216 0 0 0 chr11 3887921 3887945 -117955911 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 614 1015 53 15 0 chr11 3887948 3888079 -117955777 - B1_Mus1 SINE Alu -7 141 9 7 614 519 237 97 152 chr11 3888082 3888351 -117955505 - MTD-int LTR MaLR -1004 254 1 7 614 561 294 72 23 chr11 3888354 3888655 -117955201 - MTD LTR MaLR -4 415 73 7 614 189 0 0 0 chr11 3888741 3888762 -117955094 + (A)n Simple_repeat Simple_repeat 1 21 0 7 614 216 299 11 54 chr11 3890325 3890417 -117953439 + MIRm SINE MIR 60 147 -129 7 614 381 196 262 47 chr11 3890737 3890844 -117953012 - RSINE1 SINE B4 -28 137 8 7 614 368 169 0 17 chr11 3890892 3890952 -117952904 - B1F2 SINE Alu -90 59 1 7 614 333 299 65 9 chr11 3890952 3891000 -117952856 - ID_B1 SINE B4 -84 140 27 7 614 411 73 0 0 chr11 3891228 3891283 -117952573 + (CCA)n Simple_repeat Simple_repeat 2 56 0 7 614 222 283 67 0 chr11 3891291 3891351 -117952505 - ID4_ SINE ID -11 72 9 7 614 320 283 47 9 chr11 3892130 3892237 -117951619 + MIRb SINE MIR 42 152 -116 7 614 794 122 83 8 chr11 3892979 3893111 -117950745 + B1_Mur2 SINE Alu 1 142 -7 7 614 256 244 137 53 chr11 3893219 3893314 -117950542 - PB1D10 SINE Alu 0 117 15 7 614 685 295 33 73 chr11 3893766 3893837 -117950019 - B4A SINE B4 0 292 230 7 614 944 116 0 76 chr11 3893837 3893995 -117949861 - B1_Mus2 SINE Alu -1 146 1 7 614 685 295 33 73 chr11 3893995 3894223 -117949633 - B4A SINE B4 -63 229 5 7 614 221 0 0 33 chr11 3894837 3894867 -117948989 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 614 724 239 0 0 chr11 3894867 3895005 -117948851 - B1_Mur2 SINE Alu -11 138 1 7 614 408 67 0 0 chr11 3895035 3895095 -117948761 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 614 225 0 0 0 chr11 3895095 3895120 -117948736 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 614 600 126 0 0 chr11 3895133 3895220 -117948636 - B2_Mm2 SINE B2 -108 87 1 7 614 747 62 0 0 chr11 3895220 3895317 -117948539 + (TTTC)n Simple_repeat Simple_repeat 1 97 0 7 614 1002 141 0 20 chr11 3896062 3896214 -117947642 - B1_Mur4 SINE Alu -1 149 1 7 614 210 111 22 22 chr11 3896224 3896270 -117947586 + T-rich Low_complexity Low_complexity 2 47 0 7 614 1251 48 0 13 chr11 3896272 3896421 -117947435 - B1_Mus2 SINE Alu 0 147 1 7 614 216 97 0 0 chr11 3896472 3896503 -117947353 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 614 663 222 263 0 chr11 3897526 3897697 -117946159 + B3 SINE B2 1 216 0 7 614 255 306 69 39 chr11 3897742 3897844 -117946012 + ID_B1 SINE B4 2 106 -118 7 614 301 286 39 39 chr11 3899236 3899389 -117944467 - L1M4b LINE L1 -4962 2372 2220 7 614 183 286 54 0 chr11 3899877 3899933 -117943923 - MIR SINE MIR -84 178 120 7 614 218 318 118 0 chr11 3900443 3900528 -117943328 - MIR SINE MIR -56 152 58 7 614 556 191 38 9 chr11 3900680 3900786 -117943070 - PB1D9 SINE Alu -4 116 8 7 614 225 308 135 34 chr11 3900991 3901139 -117942717 + B2_Mm2 SINE B2 1 163 -32 7 614 3214 42 39 0 chr11 3901904 3902285 -117941571 - MTA_Mm LTR MaLR 0 396 1 7 614 901 32 31 8 chr11 3902285 3902412 -117941444 - MTA_Mm-int LTR MaLR 0 1098 969 7 614 6912 90 30 20 chr11 3902936 3903976 -117939880 - MTA_Mm-int LTR MaLR -48 1050 1 7 614 3177 39 39 3 chr11 3903976 3904358 -117939498 - MTA_Mm LTR MaLR 0 396 1 7 614 306 229 0 16 chr11 3904549 3904602 -117939254 + B1F SINE Alu 1 53 -96 7 614 742 220 158 11 chr11 3904602 3904786 -117939070 + B3 SINE B2 1 211 -5 7 614 281 255 144 58 chr11 3904828 3904932 -117938924 + ID_B1 SINE B4 8 120 -104 7 614 227 411 0 0 chr11 3904993 3905168 -117938688 + (CA)n Simple_repeat Simple_repeat 1 175 0 7 614 422 325 0 8 chr11 3905235 3905362 -117938494 + ID_B1 SINE B4 99 224 0 7 614 338 311 16 21 chr11 3905927 3906031 -117937825 - B1F1 SINE Alu -16 111 6 7 614 591 116 455 23 chr11 3906038 3906170 -117937686 - B2_Mm2 SINE B2 -6 189 1 7 614 311 0 0 25 chr11 3906189 3906229 -117937627 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 614 1138 107 0 0 chr11 3906230 3906389 -117937467 - B2_Mm2 SINE B2 -33 162 4 7 614 363 241 239 6 chr11 3906398 3906557 -117937299 - B3A SINE B2 -1 197 2 7 614 631 212 98 102 chr11 3906589 3906804 -117937052 - B3 SINE B2 0 216 3 7 614 324 0 0 0 chr11 3907939 3907975 -117935881 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 614 1473 41 0 0 chr11 3908096 3908315 -117935541 + (CCA)n Simple_repeat Simple_repeat 1 219 0 7 614 327 348 103 28 chr11 3908341 3908486 -117935370 - MER2B DNA MER2_type -5 331 176 7 614 851 236 18 0 chr11 3908579 3908744 -117935112 - B3 SINE B2 -1 215 48 7 614 373 328 94 91 chr11 3908906 3908963 -117934893 + MTEa LTR MaLR 3 51 -328 7 614 402 21 0 0 chr11 3908963 3909010 -117934846 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 614 373 328 94 91 chr11 3909010 3909223 -117934633 + MTEa LTR MaLR 52 266 -113 7 614 432 0 0 0 chr11 3909223 3909271 -117934585 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 614 373 328 94 91 chr11 3909271 3909328 -117934528 + MTEa LTR MaLR 267 331 -48 7 614 624 235 0 0 chr11 3909359 3909474 -117934382 - RSINE1 SINE B4 -21 144 30 7 614 289 219 39 52 chr11 3909621 3909698 -117934158 - ORR1E LTR MaLR -283 76 1 7 614 696 272 193 0 chr11 3909832 3910075 -117933781 - B4A SINE B4 -2 290 1 7 614 2943 124 11 22 chr11 3910151 3910598 -117933258 - Lx4A LINE L1 -14 7044 6603 7 614 2014 179 24 40 chr11 3910915 3911287 -117932569 - ORR1D1 LTR MaLR -8 366 1 7 614 6635 179 44 41 chr11 3911288 3912198 -117931658 - ORR1D1-int LTR MaLR -1 1369 458 7 614 1333 91 29 0 chr11 3912198 3912373 -117931483 - B2_Mm2 SINE B2 -14 181 2 7 614 6635 179 44 41 chr11 3912373 3912827 -117931029 - ORR1D1-int LTR MaLR -913 457 1 7 614 703 273 88 0 chr11 3912827 3913021 -117930835 - ORR1D1 LTR MaLR 0 374 164 7 614 437 262 54 31 chr11 3913303 3913433 -117930423 + B1F2 SINE Alu 17 149 0 7 614 1086 130 0 0 chr11 3913435 3913612 -117930244 + (CAT)n Simple_repeat Simple_repeat 2 178 0 7 614 498 221 0 46 chr11 3913771 3913880 -117929976 - PB1D10 SINE Alu -13 104 1 7 614 531 273 49 8 chr11 3914421 3914543 -117929313 - B1F2 SINE Alu -6 143 17 7 614 712 218 0 31 chr11 3914582 3914710 -117929146 - RSINE1 SINE B4 -2 163 40 7 614 567 219 101 0 chr11 3914738 3914857 -117928999 - ID_B1 SINE B4 -1 223 93 7 614 1093 220 140 0 chr11 3914923 3915173 -117928683 + B4A SINE B4 2 286 -6 7 614 413 208 13 0 chr11 3915203 3915280 -117928576 - ORR1D1 LTR MaLR -290 89 12 7 614 313 246 0 42 chr11 3915412 3915484 -117928372 - PB1D10 SINE Alu 0 117 49 7 614 637 190 8 25 chr11 3915518 3915637 -117928219 + MTC LTR MaLR 3 119 -302 7 614 485 184 0 0 chr11 3915625 3915701 -117928155 + MTC LTR MaLR 290 365 -56 7 614 292 102 102 0 chr11 3915707 3915756 -117928100 - MTC LTR MaLR -136 285 232 7 614 3961 38 21 4 chr11 3915756 3916230 -117927626 + RLTR45 LTR ERVK 1 482 0 7 614 15189 30 39 5 chr11 3916230 3919338 -117924518 + RLTR45-int LTR ERVK 1 3211 -4033 7 614 4411 50 7 24 chr11 3919311 3919929 -117923927 + RLTR45-int LTR ERVK 3380 3986 -3258 7 614 17910 34 6 1 chr11 3919921 3922091 -117921765 + RLTR45-int LTR ERVK 5064 7244 0 7 614 3885 39 32 2 chr11 3922091 3922559 -117921297 + RLTR45 LTR ERVK 1 482 0 7 614 1457 149 8 4 chr11 3922560 3922795 -117921061 - MTC LTR MaLR -185 236 1 7 614 1367 203 79 146 chr11 3924584 3924920 -117918936 - MTD LTR MaLR 0 419 110 7 614 981 0 0 0 chr11 3924920 3925029 -117918827 + (GGGAA)n Simple_repeat Simple_repeat 5 113 0 7 614 1367 203 79 146 chr11 3925029 3925136 -117918720 - MTD LTR MaLR -310 109 6 7 614 180 0 0 0 chr11 3925142 3925162 -117918694 + (A)n Simple_repeat Simple_repeat 1 20 0 7 614 196 178 178 0 chr11 3925347 3925392 -117918464 + MIRc SINE MIR 50 102 -166 7 614 592 250 208 0 chr11 3925512 3925704 -117918152 - MLT1C LTR MaLR -12 455 224 7 614 758 137 8 39 chr11 3926257 3926386 -117917470 - B1_Mur4 SINE Alu -2 148 24 7 614 556 293 108 62 chr11 3926416 3926722 -117917134 - RMER13A LTR ERVK -4 856 537 7 614 2436 231 51 41 chr11 3926692 3927354 -117916502 - RMER13A LTR ERVK -191 669 1 7 614 23 0 0 0 chr11 3927430 3927453 -117916403 + GC_rich Low_complexity Low_complexity 1 23 0 7 614 255 170 0 0 chr11 3927969 3928016 -117915840 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 614 519 260 65 26 chr11 3928016 3928170 -117915686 - RSINE1 SINE B4 0 165 6 7 614 910 142 191 23 chr11 3928325 3928484 -117915372 + B3 SINE B2 2 190 -26 7 614 300 53 0 0 chr11 3928484 3928522 -117915334 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 614 910 142 191 23 chr11 3928522 3928535 -117915321 + B3 SINE B2 191 203 -13 7 614 487 227 82 0 chr11 3928865 3928975 -117914881 - ID_B1 SINE B4 -5 219 101 7 614 297 273 0 15 chr11 3929012 3929079 -117914777 + BC1_Mm scRNA scRNA 2 67 -85 8 614 1045 222 24 5 chr11 3929090 3929298 -117914558 - B3 SINE B2 0 216 5 8 614 231 211 0 0 chr11 3929309 3929366 -117914490 - B3 SINE B2 0 216 160 8 614 341 210 108 24 chr11 3929362 3929445 -117914411 - PB1D10 SINE Alu -27 90 1 8 614 747 216 45 20 chr11 3929468 3929666 -117914190 - B3 SINE B2 -13 203 1 8 614 264 308 39 0 chr11 3929684 3929788 -117914068 + L1MC1 LINE L1 5994 6101 -232 8 614 799 168 15 0 chr11 3929834 3929965 -117913891 + B1F2 SINE Alu 17 149 0 8 614 2309 142 37 65 chr11 3930086 3930394 -117913462 - MTC LTR MaLR 0 421 110 8 614 1183 69 7 0 chr11 3930394 3930539 -117913317 + B1_Mus2 SINE Alu 2 147 0 8 614 2309 142 37 65 chr11 3930539 3930659 -117913197 - MTC LTR MaLR -312 109 5 8 614 390 283 55 8 chr11 3930663 3930791 -117913065 + B1F SINE Alu 3 136 -13 8 614 347 326 48 37 chr11 3930793 3930981 -117912875 - MER33 DNA MER1_type -98 226 37 8 614 255 125 0 0 chr11 3932061 3932101 -117911755 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 615 356 273 56 5 chr11 3932426 3932537 -117911319 + PB1D10 SINE Alu 4 117 0 8 615 1115 111 78 0 chr11 3933306 3933486 -117910370 - B2_Mm2 SINE B2 0 195 2 8 615 629 212 0 0 chr11 3933876 3933994 -117909862 + PB1D9 SINE Alu 1 118 -2 8 615 310 238 16 0 chr11 3934024 3934087 -117909769 - PB1D9 SINE Alu -27 93 30 8 615 297 0 0 0 chr11 3934102 3934135 -117909721 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 615 1026 217 0 10 chr11 3934139 3934339 -117909517 - B3 SINE B2 -17 199 2 8 615 495 246 18 18 chr11 3934358 3934470 -117909386 - PB1D10 SINE Alu -5 112 1 8 615 200 268 79 7 chr11 3934506 3934572 -117909284 - MIRc SINE MIR -103 165 93 8 615 1149 225 123 31 chr11 3935411 3935801 -117908055 - RMER10A LTR ERVL 0 442 17 8 615 771 240 121 55 chr11 3935865 3936138 -117907718 - B4A SINE B4 0 292 2 8 615 1473 64 11 0 chr11 3937121 3937309 -117906547 - B2_Mm1t SINE B2 -2 191 2 8 615 402 284 121 0 chr11 3937464 3937605 -117906251 - MER3 DNA MER1_type -8 201 44 8 615 316 192 0 0 chr11 3938037 3938089 -117905767 + PB1 SINE Alu 17 68 -59 8 615 707 132 0 66 chr11 3938180 3938302 -117905554 + B1_Mus2 SINE Alu 11 124 -23 8 615 783 210 0 0 chr11 3938307 3938483 -117905373 + (TA)n Simple_repeat Simple_repeat 2 177 0 8 615 241 306 78 61 chr11 3938487 3938602 -117905254 + B4A SINE B4 2 118 -174 8 615 211 320 67 103 chr11 3938602 3938682 -117905174 + B3A SINE B2 2 189 -9 8 615 366 320 48 0 chr11 3938824 3938927 -117904929 - RSINE1 SINE B4 -20 145 38 8 615 441 54 0 0 chr11 3938936 3938992 -117904864 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 615 357 24 0 0 chr11 3938986 3939028 -117904828 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 8 615 1382 181 167 33 chr11 3939028 3939417 -117904439 - RMER10A LTR ERVL -1 441 1 8 615 450 0 0 0 chr11 3940278 3940328 -117903528 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 615 189 107 0 0 chr11 3940331 3940359 -117903497 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 615 411 218 26 0 chr11 3940401 3940479 -117903377 + B4A SINE B4 14 93 -199 8 615 328 250 35 23 chr11 3940664 3940836 -117903020 + (TA)n Simple_repeat Simple_repeat 2 175 0 8 615 905 230 0 0 chr11 3940847 3941008 -117902848 + RSINE1 SINE B4 5 165 0 8 615 505 156 141 30 chr11 3941085 3941184 -117902672 + PB1D9 SINE Alu 10 119 -1 8 615 613 229 122 0 chr11 3941354 3941485 -117902371 - RSINE1 SINE B4 -17 148 2 8 615 558 79 0 0 chr11 3941980 3942056 -117901800 + (GGA)n Simple_repeat Simple_repeat 1 76 0 8 615 1254 84 33 11 chr11 3942351 3942531 -117901325 - B2_Mm2 SINE B2 -1 194 11 8 615 279 360 6 57 chr11 3942774 3942933 -117900923 + MIRb SINE MIR 67 217 -51 8 615 224 321 25 19 chr11 3945350 3945512 -117898344 + (TCCTG)n Simple_repeat Simple_repeat 2 164 0 8 615 229 241 35 53 chr11 3945505 3945676 -117898180 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 8 615 218 262 28 55 chr11 3945832 3946014 -117897842 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 8 615 218 234 0 0 chr11 3947032 3947079 -117896777 - PB1D7 SINE Alu -6 114 68 8 615 261 0 0 0 chr11 3948010 3948039 -117895817 + (A)n Simple_repeat Simple_repeat 1 29 0 8 615 568 299 5 65 chr11 3948669 3948869 -117894987 + RMER30 DNA MER1_type 8 195 -7 8 615 180 176 0 0 chr11 3948897 3948931 -117894925 + CT-rich Low_complexity Low_complexity 3 36 0 8 615 3041 19 0 13 chr11 3948952 3949324 -117894532 + IAPLTR1_Mm LTR ERVK 1 367 0 8 615 922 101 31 0 chr11 3949393 3949552 -117894304 + RLTR10 LTR ERVK 227 390 0 8 615 16814 19 0 0 chr11 3949562 3951506 -117892350 + RLTR10-int LTR ERVK 41 1984 -3 8 615 2395 31 2 261 chr11 3951508 3952029 -117891827 + RLTR10 LTR ERVK 1 386 -4 8 615 202 123 29 58 chr11 3952037 3952106 -117891750 + CT-rich Low_complexity Low_complexity 1 67 0 8 615 215 211 83 14 chr11 3953340 3953412 -117890444 - MIRc SINE MIR -126 142 66 8 615 473 152 137 29 chr11 3953413 3953515 -117890341 + B1_Mur4 SINE Alu 37 149 -1 8 615 240 372 13 0 chr11 3953550 3953628 -117890228 + ID4_ SINE ID 2 80 -3 8 615 2538 154 90 16 chr11 3954027 3954536 -117889320 - RMER19B LTR ERVK 0 902 356 8 615 1000 153 0 199 chr11 3954579 3954840 -117889016 - RMER19B LTR ERVK -693 209 1 8 615 663 276 52 5 chr11 3955235 3955446 -117888410 + B4 SINE B4 32 252 -40 8 615 504 214 20 0 chr11 3955646 3955744 -117888112 + ID_B1 SINE B4 116 215 -9 8 615 186 103 0 0 chr11 3955745 3955774 -117888082 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 8 615 25 31 0 0 chr11 3955836 3955868 -117887988 + AT_rich Low_complexity Low_complexity 1 32 0 8 615 219 288 12 48 chr11 3955950 3956034 -117887822 + B3A SINE B2 41 121 -77 8 615 3419 168 36 31 chr11 3956102 3956773 -117887083 + RMER1A Other Other 352 1025 -5 8 615 697 77 67 0 chr11 3957301 3957405 -117886451 + BC1_Mm scRNA scRNA 1 111 -41 8 615 360 298 30 25 chr11 3957470 3957626 -117886230 + L1MB7 LINE L1 5609 5766 -418 8 615 1336 71 16 0 chr11 3957667 3957843 -117886013 + B2_Mm2 SINE B2 2 180 -15 8 615 333 0 0 0 chr11 3957843 3957880 -117885976 + (GAA)n Simple_repeat Simple_repeat 3 39 0 8 615 663 182 43 43 chr11 3957887 3958025 -117885831 + B1_Mur1 SINE Alu 1 138 -11 8 615 898 67 15 0 chr11 3958041 3958176 -117885680 + (GGA)n Simple_repeat Simple_repeat 3 139 0 8 615 349 286 68 44 chr11 3958416 3958621 -117885235 + L1MB7 LINE L1 5861 6070 -108 8 615 653 250 224 21 chr11 3958688 3958925 -117884931 + B4A SINE B4 1 285 -7 8 615 231 36 0 0 chr11 3958963 3958991 -117884865 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 615 510 271 31 0 chr11 3959120 3959249 -117884607 + ID_B1 SINE B4 84 216 -8 8 615 317 344 38 8 chr11 3959488 3959620 -117884236 - B3A SINE B2 -13 185 50 8 615 234 0 0 0 chr11 3959809 3959835 -117884021 + (T)n Simple_repeat Simple_repeat 1 26 0 8 615 3658 160 77 14 chr11 3959863 3960574 -117883282 - RMER1A Other Other 0 1030 275 8 615 286 294 0 0 chr11 3960751 3960819 -117883037 + ID4 SINE ID 15 82 -1 8 615 228 335 90 39 chr11 3962178 3962333 -117881523 + MIR SINE MIR 88 243 -25 8 615 424 259 44 7 chr11 3962382 3962518 -117881338 + B1F1 SINE Alu 2 142 -7 8 615 400 270 36 0 chr11 3962698 3962809 -117881047 + PB1D10 SINE Alu 1 115 -2 8 615 587 184 10 21 chr11 3963531 3963659 -117880197 - PB1D10 SINE Alu -4 145 15 8 615 252 240 94 94 chr11 3963573 3963679 -117880177 - MT2B2 LTR ERVL -329 255 150 8 615 549 0 0 0 chr11 3965475 3965536 -117878320 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 8 615 486 49 0 0 chr11 3965538 3965599 -117878257 + (TC)n Simple_repeat Simple_repeat 1 61 0 8 615 776 247 11 11 chr11 3965676 3965946 -117877910 + (TCCA)n Simple_repeat Simple_repeat 1 270 0 8 615 1185 40 0 20 chr11 3966877 3967028 -117876828 + B1_Mus1 SINE Alu 1 148 0 8 615 823 186 7 0 chr11 3967053 3967198 -117876658 + B1_Mus1 SINE Alu 2 147 -1 8 615 263 333 143 28 chr11 3967214 3967396 -117876460 - MIRb SINE MIR -64 204 2 8 615 239 253 98 11 chr11 3968241 3968333 -117875523 + MIRm SINE MIR 44 143 -133 8 615 617 274 18 18 chr11 3968368 3968535 -117875321 - Tigger5 DNA MER2_type -1 2405 2239 8 615 433 241 28 49 chr11 3968533 3968677 -117875179 - Tigger5 DNA MER2_type -2252 154 14 8 615 233 185 45 30 chr11 3968681 3968748 -117875108 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 8 615 739 110 59 12 chr11 3968748 3969087 -117874769 + (TGGG)n Simple_repeat Simple_repeat 1 355 0 8 615 625 208 12 0 chr11 3969373 3969541 -117874315 + (CA)n Simple_repeat Simple_repeat 2 171 0 8 615 370 247 31 10 chr11 3970369 3970467 -117873389 - B1F SINE Alu -26 123 24 8 615 327 291 9 19 chr11 3970376 3970481 -117873375 - ID_B1 SINE B4 -30 194 91 8 615 754 204 7 20 chr11 3970540 3970690 -117873166 - B1_Mur1 SINE Alu -1 148 1 8 615 297 353 12 6 chr11 3970834 3971002 -117872854 + (GCTG)n Simple_repeat Simple_repeat 2 170 0 8 615 234 307 78 101 chr11 3971773 3972171 -117871685 + L1M3e LINE L1 467 855 -6175 8 615 234 298 158 51 chr11 3972409 3972720 -117871136 + L1M3e LINE L1 467 810 -6220 8 615 423 267 29 10 chr11 3973135 3973237 -117870619 + RSINE1 SINE B4 37 140 -25 8 615 24 67 0 0 chr11 3973259 3973304 -117870552 + AT_rich Low_complexity Low_complexity 1 45 0 8 615 275 213 10 10 chr11 3973452 3973519 -117870337 - PB1D10 SINE Alu -70 79 13 9 615 342 152 0 0 chr11 3973631 3973690 -117870166 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 9 615 483 18 0 0 chr11 3973714 3973770 -117870086 + (TC)n Simple_repeat Simple_repeat 1 56 0 9 615 1044 75 0 0 chr11 3973770 3973904 -117869952 - B1_Mus2 SINE Alu -12 135 2 9 615 480 145 156 31 chr11 3977054 3977182 -117866674 + B2_Mm2 SINE B2 48 191 -4 9 615 283 326 148 6 chr11 3977225 3977407 -117866449 - MIRb SINE MIR 0 268 61 9 615 405 233 36 12 chr11 3977595 3977656 -117866200 + B4 SINE B4 13 149 -143 9 615 456 78 0 0 chr11 3977656 3977720 -117866136 + PB1D9 SINE Alu 1 64 -56 9 615 441 0 0 0 chr11 3977720 3977769 -117866087 + (GAA)n Simple_repeat Simple_repeat 1 49 0 9 615 483 202 36 16 chr11 3978204 3978326 -117865530 - MTC LTR MaLR -8 413 276 9 615 1317 173 109 7 chr11 3978419 3978693 -117865163 - MTC LTR MaLR -106 315 14 9 615 2899 275 114 38 chr11 3979026 3980238 -117863618 - Lx8 LINE L1 -51 7422 6119 9 615 440 267 151 0 chr11 3980321 3980467 -117863389 + B3A SINE B2 1 168 -30 9 615 556 275 8 8 chr11 3980943 3981075 -117862781 + ID_B1 SINE B4 70 201 -23 9 615 255 204 20 0 chr11 3981354 3981403 -117862453 - MIRc SINE MIR -136 132 83 9 615 1016 183 77 0 chr11 3981524 3981732 -117862124 - URR1B DNA MER1_type 0 225 2 9 615 417 195 0 35 chr11 3981854 3981939 -117861917 - B1_Mur2 SINE Alu 0 149 68 9 615 3790 48 126 0 chr11 3981974 3982475 -117861381 - LTRIS2 LTR ERV1 0 564 1 9 615 355 240 0 0 chr11 3982602 3982677 -117861179 - PB1D10 SINE Alu -20 97 23 9 615 297 0 0 0 chr11 3982943 3982976 -117860880 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 615 349 281 0 10 chr11 3983019 3983123 -117860733 - PB1D10 SINE Alu -14 103 1 9 615 256 262 16 0 chr11 3983335 3983396 -117860460 - MIRc SINE MIR -123 145 84 9 615 369 0 0 0 chr11 3984757 3984798 -117859058 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 615 2254 153 16 41 chr11 3984978 3985420 -117858436 + RLTR1D LTR ERV1 175 605 0 9 615 804 170 42 14 chr11 3985783 3985926 -117857930 - B1_Mur1 SINE Alu 0 149 3 9 615 249 337 52 21 chr11 3986163 3986260 -117857596 + Tigger7 DNA MER2_type 22 121 -2370 9 615 1382 246 58 81 chr11 3986336 3986892 -117856964 - RLTR31_Mur LTR ERVK 0 553 11 9 615 366 289 78 13 chr11 3987170 3987324 -117856532 + RMER15 LTR ERVL 347 510 -65 9 615 265 344 115 0 chr11 3987504 3987626 -117856230 + MER63B DNA AcHobo 293 428 -8 9 615 969 278 80 15 chr11 3987779 3988115 -117855741 - L1_Mur3 LINE L1 -61 5819 5462 9 615 1781 118 121 25 chr11 3988210 3988533 -117855323 + ORR1B1 LTR MaLR 41 394 0 9 615 9512 126 32 148 chr11 3988533 3989267 -117854589 + ORR1B1-int LTR MaLR 11 698 -1265 9 615 1170 48 7 0 chr11 3989267 3989413 -117854443 - B1_Mus1 SINE Alu 0 148 2 9 615 9512 126 32 148 chr11 3989413 3990886 -117852970 + ORR1B1-int LTR MaLR 699 1963 0 9 615 1764 127 96 25 chr11 3990893 3991216 -117852640 + ORR1B1 LTR MaLR 41 386 -8 9 615 789 244 66 5 chr11 3991781 3991979 -117851877 + B3 SINE B2 1 210 -6 9 615 203 282 49 37 chr11 3992458 3992539 -117851317 - MIRm SINE MIR -94 182 101 9 615 980 96 13 46 chr11 3992648 3992801 -117851055 + B1_Mus1 SINE Alu 1 148 0 9 615 1331 62 23 0 chr11 3992803 3992980 -117850876 + B2_Mm2 SINE B2 1 181 -14 9 615 512 219 244 0 chr11 3992998 3993162 -117850694 - B3 SINE B2 -10 206 3 9 615 196 194 0 0 chr11 3994865 3994901 -117848955 - MIRc SINE MIR -120 148 113 9 615 186 188 20 20 chr11 3995036 3995085 -117848771 + MIRm SINE MIR 87 135 -141 9 615 198 0 0 0 chr11 3995971 3995993 -117847863 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 615 752 200 56 1 chr11 3996058 3996257 -117847599 + B3A SINE B2 6 216 0 9 615 491 260 8 16 chr11 3996288 3996413 -117847443 + B1_Mur1 SINE Alu 1 124 -25 9 615 344 218 116 18 chr11 3999157 3999269 -117844587 + ID_B1 SINE B4 82 204 -20 9 615 232 267 0 32 chr11 4000171 4000233 -117843623 + ID SINE ID 22 81 -143 1 615 447 227 115 60 chr11 4000232 4000308 -117843548 + MER20B DNA MER1_type 590 674 -109 2 615 1433 70 37 16 chr11 4000308 4000498 -117843358 + B2_Mm2 SINE B2 1 194 -1 3 615 447 227 115 60 chr11 4000498 4000604 -117843252 + MER20B DNA MER1_type 675 782 -1 2 615 840 167 143 0 chr11 4001495 4001663 -117842193 - B2_Mm2 SINE B2 -1 194 3 4 615 255 296 93 20 chr11 4002079 4002231 -117841625 - MIRb SINE MIR -88 188 29 5 615 524 89 13 0 chr11 4002339 4002418 -117841438 + (CATAC)n Simple_repeat Simple_repeat 3 82 0 6 615 418 209 50 4 chr11 4003000 4003109 -117840747 - PB1D10 SINE Alu -35 114 1 7 615 249 278 0 27 chr11 4003054 4003128 -117840728 - B4 SINE B4 -152 140 69 8 615 1039 61 0 77 chr11 4004117 4004312 -117839544 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 615 1079 79 0 78 chr11 4004332 4004718 -117839138 + (TG)n Simple_repeat Simple_repeat 1 355 0 9 615 326 215 40 79 chr11 4005873 4005974 -117837882 - PB1D9 SINE Alu -5 115 19 1 615 401 297 49 43 chr11 4006009 4006171 -117837685 - RSINE1 SINE B4 0 165 3 1 615 486 238 79 0 chr11 4006175 4006301 -117837555 - B1F1 SINE Alu -3 146 11 1 615 402 164 8 133 chr11 4006333 4006453 -117837403 + MT2B LTR ERVL 160 264 -337 1 615 959 16 16 0 chr11 4006363 4006486 -117837370 + B1_Mus2 SINE Alu 23 147 0 1 615 201 250 0 0 chr11 4009416 4009468 -117834388 + MIR3 SINE MIR 127 178 -30 1 615 369 0 0 0 chr11 4009805 4009846 -117834010 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 615 735 90 0 0 chr11 4009846 4009967 -117833889 + (TG)n Simple_repeat Simple_repeat 1 122 0 1 615 276 316 0 0 chr11 4010290 4010369 -117833487 - ID2 SINE ID -1 82 4 1 615 388 238 9 28 chr11 4010391 4010499 -117833357 - PB1D10 SINE Alu 0 117 12 1 615 347 307 50 83 chr11 4010415 4010596 -117833260 - ID_B1 SINE B4 -48 176 2 2 615 270 216 47 129 chr11 4010748 4010833 -117833023 + ID4 SINE ID 6 83 0 2 615 180 152 0 0 chr11 4010835 4010868 -117832988 + GA-rich Low_complexity Low_complexity 1 33 0 2 615 234 330 58 0 chr11 4012798 4012901 -117830955 - L3 LINE CR1 -603 3886 3778 2 615 291 316 41 0 chr11 4013239 4013337 -117830519 + B1F1 SINE Alu 40 141 -8 2 615 363 301 59 65 chr11 4013375 4013528 -117830328 + RSINE1 SINE B4 4 155 -10 2 615 1672 42 0 0 chr11 4013853 4014046 -117829810 + B2_Mm1a SINE B2 1 193 0 2 615 242 48 0 67 chr11 4014613 4014658 -117829198 + (T)n Simple_repeat Simple_repeat 1 42 0 2 615 259 272 0 182 chr11 4014781 4014821 -117829035 + ID4 SINE ID 1 28 -55 2 615 1190 56 0 0 chr11 4014821 4014964 -117828892 + B1_Mus1 SINE Alu 2 144 -4 2 615 252 59 0 0 chr11 4014964 4014998 -117828858 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 615 259 272 0 182 chr11 4014998 4015055 -117828801 + ID4 SINE ID 29 80 -3 2 615 250 225 90 3 chr11 4015128 4015219 -117828637 + MIRb SINE MIR 70 166 -102 3 615 438 20 0 0 chr11 4015380 4015431 -117828425 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 615 297 0 0 0 chr11 4015431 4015463 -117828393 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 615 180 289 161 32 chr11 4016337 4016430 -117827426 + MIR SINE MIR 29 133 -75 3 615 201 217 0 21 chr11 4016521 4016568 -117827288 + MIR SINE MIR 96 141 -67 3 615 286 298 43 86 chr11 4017032 4017219 -117826637 - MIRb SINE MIR -23 245 67 3 615 421 282 122 79 chr11 4019156 4019345 -117824511 + ID_B1 SINE B4 2 198 -26 3 615 228 290 43 0 chr11 4020434 4020503 -117823353 + B1F1 SINE Alu 5 76 -73 3 615 204 125 0 0 chr11 4022713 4022745 -117821111 + (TTG)n Simple_repeat Simple_repeat 3 34 0 3 615 631 143 13 0 chr11 4024748 4024866 -117818990 - ORR1D1 LTR MaLR -252 126 4 4 615 5896 184 69 25 chr11 4024866 4026169 -117817687 - ORR1D1-int LTR MaLR -10 1360 1 4 615 1225 228 112 18 chr11 4026169 4026509 -117817347 - ORR1D1 LTR MaLR 0 374 3 4 615 236 241 0 17 chr11 4026514 4026573 -117817283 - B4A SINE B4 -50 242 185 4 615 26 30 0 0 chr11 4026575 4026608 -117817248 + AT_rich Low_complexity Low_complexity 1 33 0 4 615 420 70 0 5 chr11 4026621 4026686 -117817170 - B2_Mm2 SINE B2 -107 109 47 4 615 400 236 70 35 chr11 4026749 4026863 -117816993 - B4A SINE B4 -172 120 3 4 615 682 256 78 6 chr11 4027149 4027337 -117816519 + B3 SINE B2 8 191 -4 4 615 517 309 42 5 chr11 4027461 4027650 -117816206 - B3A SINE B2 -2 196 1 4 615 672 341 50 8 chr11 4027721 4027912 -117815944 - L1M3 LINE L1 -1444 4696 4490 4 615 204 40 0 0 chr11 4027912 4027937 -117815919 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 4 615 672 346 50 11 chr11 4027937 4028164 -117815692 - L1M3 LINE L1 -1652 4494 4270 4 615 1335 110 0 30 chr11 4028177 4028374 -117815482 + B2_Mm2 SINE B2 2 192 -3 4 615 204 83 56 0 chr11 4030181 4030217 -117813639 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 615 461 239 51 0 chr11 4030534 4030651 -117813205 - PB1 SINE Alu -4 123 1 5 615 336 224 11 46 chr11 4030654 4030770 -117813086 - PB1D10 SINE Alu -2 118 10 5 615 24 53 0 0 chr11 4030788 4030826 -117813030 + AT_rich Low_complexity Low_complexity 1 38 0 5 615 5943 110 62 3 chr11 4030851 4031756 -117812100 + RMER17B LTR ERVK 1 958 0 5 615 801 160 53 0 chr11 4031986 4032117 -117811739 + B1_Mus1 SINE Alu 2 139 -9 5 615 255 31 0 0 chr11 4032423 4032455 -117811401 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 615 265 304 192 5 chr11 4032466 4032674 -117811182 - B4A SINE B4 -44 248 2 5 615 28 29 0 0 chr11 4032717 4032752 -117811104 + AT_rich Low_complexity Low_complexity 1 35 0 5 615 1997 145 64 54 chr11 4032764 4033090 -117810766 - MTC LTR MaLR -9 412 82 5 615 824 161 7 62 chr11 4033090 4033236 -117810620 - B1_Mus1 SINE Alu -10 138 1 5 615 1997 145 64 54 chr11 4033236 4033317 -117810539 - MTC LTR MaLR -340 81 1 5 615 498 293 73 0 chr11 4033388 4033538 -117810318 - RSINE1 SINE B4 -2 163 3 6 615 847 209 52 52 chr11 4033560 4033772 -117810084 - B3 SINE B2 0 216 5 6 615 419 198 125 0 chr11 4033796 4033892 -117809964 - PB1D10 SINE Alu 0 117 10 6 615 227 254 17 17 chr11 4033845 4033905 -117809951 - B4A SINE B4 -150 142 83 6 615 1145 95 0 0 chr11 4033924 4034071 -117809785 + B1_Mus2 SINE Alu 1 147 0 6 615 244 102 33 17 chr11 4034071 4034125 -117809731 + A-rich Low_complexity Low_complexity 9 63 0 6 615 235 244 0 35 chr11 4035129 4035214 -117808642 + (CCCCG)n Simple_repeat Simple_repeat 2 83 0 6 615 286 290 0 0 chr11 4035304 4035373 -117808483 + (CCG)n Simple_repeat Simple_repeat 2 70 0 6 615 313 136 30 0 chr11 4038142 4038208 -117805648 + CT-rich Low_complexity Low_complexity 1 68 0 6 615 281 291 7 25 chr11 4041223 4041303 -117802553 + ID_B1 SINE B4 83 156 -68 6 615 954 164 0 0 chr11 4041303 4041449 -117802407 + B1_Mur3 SINE Alu 1 146 -3 7 615 281 303 61 0 chr11 4041449 4041480 -117802376 + ID_B1 SINE B4 157 193 -31 6 615 213 321 164 9 chr11 4041493 4041512 -117802344 + B1_Mur1 SINE Alu 22 148 -1 7 615 378 220 132 0 chr11 4041512 4041603 -117802253 + ID_B1 SINE B4 121 223 -1 7 615 306 229 42 14 chr11 4041786 4041857 -117801999 + ID SINE ID 2 74 -150 7 615 253 330 0 44 chr11 4041805 4041919 -117801937 + BC1_Mm scRNA scRNA 22 130 -22 7 615 742 175 51 0 chr11 4041991 4042128 -117801728 - B1_Mur3 SINE Alu -1 148 5 7 615 335 272 189 39 chr11 4042133 4042366 -117801490 + MLT1E2 LTR MaLR 270 537 -90 7 615 313 280 0 0 chr11 4042409 4042484 -117801372 - PB1D10 SINE Alu -6 111 37 7 615 965 118 29 0 chr11 4042696 4042832 -117801024 + B1_Mur3 SINE Alu 2 141 -8 7 615 1141 151 10 15 chr11 4044865 4045060 -117798796 + B2_Mm2 SINE B2 1 194 -1 7 615 769 212 122 6 chr11 4045244 4045424 -117798432 + B3 SINE B2 3 203 -13 8 615 25 31 0 0 chr11 4045446 4045478 -117798378 + AT_rich Low_complexity Low_complexity 1 32 0 8 615 471 281 57 70 chr11 4045481 4045638 -117798218 + RSINE1 SINE B4 3 157 -8 8 615 245 364 44 39 chr11 4046990 4047170 -117796686 + MIRb SINE MIR 67 247 -21 8 615 1178 69 0 0 chr11 4049487 4049631 -117794225 + B1_Mus1 SINE Alu 4 147 -1 8 615 270 274 124 0 chr11 4049685 4049798 -117794058 - MIRb SINE MIR -125 143 17 8 615 180 0 0 0 chr11 4050417 4050437 -117793419 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 8 615 279 0 0 0 chr11 4053374 4053405 -117790451 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 615 243 0 0 0 chr11 4053405 4053431 -117790425 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 8 615 337 349 94 20 chr11 4053643 4053792 -117790064 + RSINE1 SINE B4 2 161 -4 8 615 1485 22 79 0 chr11 4054308 4054468 -117789388 + B2_Mm1a SINE B2 1 160 -33 9 615 243 0 0 0 chr11 4054468 4054495 -117789361 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 615 1485 22 79 0 chr11 4054495 4054512 -117789344 + B2_Mm1a SINE B2 161 190 -3 9 615 37 0 0 0 chr11 4054573 4054610 -117789246 + AT_rich Low_complexity Low_complexity 1 37 0 9 615 1187 55 7 7 chr11 4054640 4054786 -117789070 - B1_Mm SINE Alu 0 147 2 9 615 1677 156 163 33 chr11 4054790 4055121 -117788735 + ORR1D1 LTR MaLR 1 374 0 9 615 623 222 193 0 chr11 4055144 4055320 -117788536 - B3 SINE B2 -5 211 2 9 615 246 32 0 0 chr11 4055347 4055378 -117788478 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 9 615 180 0 0 0 chr11 4055405 4055425 -117788431 + (GA)n Simple_repeat Simple_repeat 1 20 0 9 615 322 192 103 75 chr11 4055425 4055446 -117788410 - B1F SINE Alu -22 127 105 9 615 351 0 0 0 chr11 4055446 4055485 -117788371 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 615 441 148 43 91 chr11 4055485 4055586 -117788270 - B1_Mus1 SINE Alu -45 104 6 9 615 293 100 0 20 chr11 4055586 4055637 -117788219 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 1 615 496 281 94 0 chr11 4055762 4055922 -117787934 + B3 SINE B2 41 215 -1 1 615 1005 155 0 0 chr11 4056059 4056201 -117787655 - B1_Mur1 SINE Alu -7 142 1 1 615 22 0 0 0 chr11 4056205 4056227 -117787629 + AT_rich Low_complexity Low_complexity 1 22 0 1 615 511 298 98 27 chr11 4056227 4056410 -117787446 - B3A SINE B2 0 198 3 1 615 390 182 444 0 chr11 4056439 4056538 -117787318 + B1_Mm SINE Alu 5 147 0 1 615 581 228 91 81 chr11 4056557 4056743 -117787113 - ID_B1 SINE B4 -35 189 2 1 615 849 179 21 0 chr11 4056864 4057009 -117786847 - B1_Mur2 SINE Alu 0 149 2 1 615 532 212 10 0 chr11 4057128 4057227 -117786629 + PB1D10 SINE Alu 2 101 -16 1 615 242 323 46 0 chr11 4057622 4057687 -117786169 + ID2 SINE ID 12 79 -4 1 615 1846 146 8 80 chr11 4058075 4058426 -117785430 - ORR1A3 LTR MaLR 0 326 1 1 615 7298 115 33 50 chr11 4058426 4058573 -117785283 - ORR1A3-int LTR MaLR 0 1963 1813 1 615 1371 47 35 12 chr11 4058573 4058745 -117785111 + B2_Mm2 SINE B2 1 176 -19 1 615 7298 115 33 50 chr11 4058745 4059864 -117783992 - ORR1A3-int LTR MaLR -151 1812 719 1 615 646 125 22 130 chr11 4059824 4059962 -117783894 - MT2B LTR ERVL -314 287 165 1 615 280 261 103 43 chr11 4061730 4061846 -117782010 + MER102b DNA MER1_type 33 155 -186 1 615 1227 48 0 20 chr11 4062533 4062544 -117781312 - B1_Mus2 SINE Alu 0 147 139 1 615 230 0 0 32 chr11 4062544 4062575 -117781281 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 615 1227 48 0 20 chr11 4062575 4062713 -117781143 - B1_Mus2 SINE Alu -9 138 1 1 615 239 229 129 16 chr11 4062778 4062840 -117781016 + B4A SINE B4 1 69 -223 1 615 225 250 0 138 chr11 4062939 4063004 -117780852 + B4A SINE B4 176 231 -61 1 615 415 267 76 0 chr11 4063017 4063122 -117780734 + B1_Mur1 SINE Alu 34 146 -3 1 616 243 0 0 0 chr11 4063278 4063305 -117780551 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 616 557 218 7 2 chr11 4063462 4063570 -117780286 + B3A SINE B2 1 112 -83 1 616 549 0 0 0 chr11 4063607 4063668 -117780188 + (TTTCC)n Simple_repeat Simple_repeat 5 65 0 1 616 464 295 32 8 chr11 4063692 4063815 -117780041 + B1_Mur4 SINE Alu 4 129 -21 1 616 704 293 65 102 chr11 4063975 4064096 -117779760 + B4A SINE B4 10 113 -179 1 616 198 91 0 0 chr11 4064096 4064129 -117779727 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 1 616 704 293 65 102 chr11 4064129 4064300 -117779556 + B4A SINE B4 114 290 -2 1 616 382 291 41 112 chr11 4065646 4065816 -117778040 - RSINE1 SINE B4 -1 164 7 1 616 233 341 32 32 chr11 4065950 4066044 -117777812 - ID4_ SINE ID -56 96 3 1 616 879 53 0 0 chr11 4066339 4066452 -117777404 - B1_Mus1 SINE Alu 0 148 36 1 616 221 263 0 34 chr11 4068118 4068177 -117775679 - RSINE1 SINE B4 -106 59 3 1 616 252 0 0 0 chr11 4068184 4068212 -117775644 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 616 646 186 8 33 chr11 4068212 4068334 -117775522 - B1_Mus2 SINE Alu -12 135 17 1 616 447 78 0 0 chr11 4068356 4068420 -117775436 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 616 457 227 111 56 chr11 4068421 4068547 -117775309 - B1_Mus2 SINE Alu -14 133 1 1 616 187 329 12 60 chr11 4068665 4068749 -117775107 + MIRm SINE MIR 71 150 -126 1 616 276 268 82 10 chr11 4068798 4068896 -117774960 + BC1_Mm scRNA scRNA 1 105 -47 1 616 212 291 55 55 chr11 4069090 4069181 -117774675 - MIR3 SINE MIR -108 100 10 1 616 260 260 0 0 chr11 4069184 4069196 -117774660 + B4A SINE B4 74 85 -207 1 616 275 154 0 0 chr11 4069196 4069235 -117774621 + B1_Mus2 SINE Alu 1 39 -108 1 616 427 200 92 76 chr11 4069245 4069364 -117774492 - B1_Mur4 SINE Alu -1 149 29 1 616 445 223 115 9 chr11 4069357 4069470 -117774386 + B1F SINE Alu 23 147 -2 1 616 288 357 71 0 chr11 4069507 4069619 -117774237 + PB1D7 SINE Alu 1 120 0 1 616 1234 41 0 20 chr11 4069811 4069959 -117773897 + B1_Mus2 SINE Alu 2 146 -1 1 616 715 197 143 5 chr11 4070092 4070281 -117773575 - B3 SINE B2 0 216 2 1 616 284 212 0 23 chr11 4071852 4071928 -117771928 + PB1D7 SINE Alu 64 149 0 1 616 443 284 147 123 chr11 4071972 4072373 -117771483 - Lx8 LINE L1 -17 7456 7008 1 616 1420 80 0 31 chr11 4072373 4072567 -117771289 - B2_Mm1t SINE B2 -5 188 1 1 616 443 284 147 123 chr11 4072567 4072920 -117770936 - Lx8 LINE L1 -466 7007 6684 1 616 305 171 158 0 chr11 4073512 4073594 -117770262 - MT2A LTR ERVL -13 520 426 1 616 1164 176 120 14 chr11 4073596 4073864 -117769992 - MT2A LTR ERVL -154 447 1 1 616 547 237 17 17 chr11 4073864 4073979 -117769877 - B1_Mur2 SINE Alu -16 133 19 1 616 651 156 98 8 chr11 4075896 4076019 -117767837 + B1_Mur3 SINE Alu 3 136 -13 1 616 1024 78 0 0 chr11 4076888 4077017 -117766839 + B1_Mus1 SINE Alu 3 131 -17 1 616 229 284 216 0 chr11 4078878 4078952 -117764904 + ID_B1 SINE B4 78 167 -57 1 616 234 253 171 95 chr11 4078886 4078991 -117764865 + B1F2 SINE Alu 7 119 -1 1 616 350 309 88 16 chr11 4080424 4080549 -117763307 + B1F SINE Alu 1 134 -15 1 616 213 115 38 19 chr11 4080549 4080602 -117763254 + T-rich Low_complexity Low_complexity 2 55 0 1 616 211 209 0 0 chr11 4080860 4080903 -117762953 + B4A SINE B4 3 45 -247 1 616 557 259 96 0 chr11 4081333 4081468 -117762388 - B1_Mur2 SINE Alu 0 149 2 1 616 265 330 92 16 chr11 4082669 4082854 -117761002 - Lx8 LINE L1 -217 7256 7058 1 616 289 167 130 0 chr11 4082888 4082942 -117760914 + B3A SINE B2 35 95 -103 1 616 426 290 172 12 chr11 4083024 4083267 -117760589 + B4A SINE B4 6 287 -5 1 616 294 300 88 20 chr11 4083639 4083741 -117760115 + PB1 SINE Alu 17 125 -2 1 616 583 240 38 38 chr11 4083817 4083977 -117759879 + MTEa LTR MaLR 1 160 -219 1 616 201 147 0 0 chr11 4084677 4084711 -117759145 + (T)n Simple_repeat Simple_repeat 1 34 0 1 616 1110 81 129 34 chr11 4084711 4084889 -117758967 - B2_Mm2 SINE B2 0 195 1 1 616 289 309 10 49 chr11 4084930 4085032 -117758824 + MIRc SINE MIR 62 159 -109 1 616 310 271 83 101 chr11 4085054 4085390 -117758466 - L1MB7 LINE L1 -130 6054 5725 1 616 1104 64 50 0 chr11 4085526 4085666 -117758190 - B1_Mus2 SINE Alu 0 147 1 1 616 250 317 122 28 chr11 4085682 4085789 -117758067 - PB1D10 SINE Alu 0 117 1 1 616 329 189 319 18 chr11 4085926 4086039 -117757817 + B1F1 SINE Alu 1 147 -2 1 616 390 205 0 0 chr11 4086097 4086180 -117757676 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1 616 1121 61 7 33 chr11 4086194 4086346 -117757510 - B1_Mus1 SINE Alu 0 148 1 1 616 287 302 171 27 chr11 4088746 4088933 -117754923 + MIRb SINE MIR 40 253 -15 1 616 314 244 75 42 chr11 4089573 4089693 -117754163 - MIR3 SINE MIR -10 198 75 1 616 537 129 38 66 chr11 4089715 4089898 -117753958 + (CATAA)n Simple_repeat Simple_repeat 2 179 0 1 616 367 202 39 67 chr11 4089823 4090003 -117753853 + (CATAG)n Simple_repeat Simple_repeat 1 175 0 1 616 406 299 33 20 chr11 4091513 4091663 -117752193 + MIRb SINE MIR 72 223 -45 1 616 338 265 83 78 chr11 4092234 4092414 -117751442 - L2c LINE L2 -24 3363 3183 1 616 200 377 64 28 chr11 4093475 4093584 -117750272 - L2c LINE L2 -27 3360 3248 1 616 387 319 0 0 chr11 4093666 4093760 -117750096 + MIR SINE MIR 36 129 -79 1 616 358 116 136 23 chr11 4094035 4094123 -117749733 - Lx9 LINE L1 -1 7643 7546 1 616 198 0 0 0 chr11 4094133 4094155 -117749701 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 616 1137 178 49 19 chr11 4094155 4094419 -117749437 - Lx9 LINE L1 -168 7476 7205 1 616 715 213 7 14 chr11 4094420 4094563 -117749293 - B1_Mur1 SINE Alu -1 148 7 1 616 306 0 0 0 chr11 4094843 4094877 -117748979 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 616 853 185 0 7 chr11 4095350 4095486 -117748370 - B1_Mus2 SINE Alu -7 140 6 1 616 344 187 39 0 chr11 4095489 4095559 -117748297 + PB1D9 SINE Alu 47 122 -27 1 616 182 311 0 0 chr11 4096179 4096240 -117747616 - MIR SINE MIR -80 128 68 1 616 252 308 28 82 chr11 4096326 4096543 -117747313 + MIR SINE MIR 43 240 -22 1 616 181 232 53 92 chr11 4096641 4096717 -117747139 + L3 LINE CR1 29 101 -4388 1 616 335 347 54 0 chr11 4096928 4097075 -117746781 + L2c LINE L2 2988 3142 -245 1 616 198 143 82 0 chr11 4098119 4098168 -117745688 + MIRc SINE MIR 64 116 -152 1 616 216 0 0 0 chr11 4098209 4098233 -117745623 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 616 922 142 0 14 chr11 4098233 4098376 -117745480 - B1_Mur4 SINE Alu -9 141 1 1 616 241 260 28 83 chr11 4099031 4099140 -117744716 - MIRc SINE MIR -103 165 63 1 616 220 314 14 0 chr11 4099143 4099213 -117744643 + MIR SINE MIR 77 147 -61 1 616 315 0 0 0 chr11 4100643 4100678 -117743178 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 616 441 287 120 0 chr11 4100682 4100790 -117743066 - RSINE1 SINE B4 -30 135 15 1 616 227 280 99 10 chr11 4100833 4100934 -117742922 + MurSatRep1 Unknown Unknown 187 296 -1841 1 616 794 61 261 0 chr11 4101308 4101423 -117742433 - B1_Mus1 SINE Alu -1 147 3 1 616 516 78 277 25 chr11 4101438 4101557 -117742299 - B2_Mm2 SINE B2 0 195 47 1 616 1162 100 47 0 chr11 4101570 4101740 -117742116 - B2_Mm1t SINE B2 -14 179 2 1 616 236 308 92 17 chr11 4102000 4102119 -117741737 + L3 LINE CR1 4187 4314 -175 1 616 940 179 133 31 chr11 4102424 4102620 -117741236 - B3 SINE B2 0 216 1 1 616 586 88 0 0 chr11 4102859 4102939 -117740917 + B1_Mus2 SINE Alu 68 147 0 1 616 189 200 75 167 chr11 4104074 4104194 -117739662 + MIRb SINE MIR 35 143 -125 2 616 216 191 0 0 chr11 4104202 4104244 -117739612 + CT-rich Low_complexity Low_complexity 2 43 0 2 616 762 171 249 17 chr11 4104343 4104516 -117739340 - B3 SINE B2 -1 215 3 2 616 267 336 21 86 chr11 4104558 4104624 -117739232 - ID_B1 SINE B4 -86 138 8 2 616 293 270 27 0 chr11 4104624 4104698 -117739158 - ID2 SINE ID 0 83 8 2 616 204 384 35 11 chr11 4105183 4105357 -117738499 - L2c LINE L2 -246 3141 2964 2 616 369 198 0 0 chr11 4106965 4107056 -117736800 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 616 343 262 119 0 chr11 4107056 4107140 -117736716 - B1_Mus2 SINE Alu -52 95 2 2 616 192 330 74 65 chr11 4108371 4108588 -117735268 - MIRm SINE MIR -55 221 3 2 616 229 268 38 112 chr11 4109003 4109163 -117734693 - B1F SINE Alu 0 149 2 2 616 332 182 0 0 chr11 4109064 4109119 -117734737 + B1_Mur1 SINE Alu 57 111 -38 2 616 490 282 83 105 chr11 4109159 4109579 -117734277 - RMER10A LTR ERVL -31 411 1 2 616 247 316 89 0 chr11 4109598 4109677 -117734179 + MER2 DNA MER2_type 259 344 -1 2 616 807 141 59 0 chr11 4111290 4111425 -117732431 - B1_Mus1 SINE Alu 0 148 6 2 616 200 385 32 55 chr11 4111592 4111756 -117732100 + MIRc SINE MIR 12 172 -90 2 616 308 235 36 73 chr11 4114340 4114450 -117729406 - MIRc SINE MIR -119 149 44 2 616 1199 86 75 0 chr11 4117238 4117412 -117726444 + B2_Mm1t SINE B2 2 188 -5 2 616 979 124 0 7 chr11 4117790 4117928 -117725928 - B1_Mur4 SINE Alu -13 137 1 2 616 357 247 0 49 chr11 4119744 4119846 -117724010 + PB1D10 SINE Alu 21 117 0 2 616 1230 41 0 20 chr11 4122825 4122975 -117720881 - B1_Mus2 SINE Alu 0 147 1 2 616 1206 68 0 0 chr11 4123013 4123159 -117720697 - B1_Mm SINE Alu 0 147 2 2 616 1168 62 0 7 chr11 4123178 4123323 -117720533 - B1_Mus1 SINE Alu 0 148 5 2 616 189 0 0 0 chr11 4123554 4123575 -117720281 + (G)n Simple_repeat Simple_repeat 1 21 0 2 616 270 230 114 7 chr11 4124086 4124181 -117719675 - MIRc SINE MIR -113 163 60 2 616 507 73 0 0 chr11 4124205 4124273 -117719583 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 616 200 250 19 0 chr11 4124273 4124325 -117719531 - L2b LINE L2 -236 3139 3087 2 616 699 171 0 0 chr11 4124589 4124829 -117719027 + (TG)n Simple_repeat Simple_repeat 1 240 0 2 616 460 326 9 0 chr11 4125396 4125724 -117718132 + (TG)n Simple_repeat Simple_repeat 1 331 0 2 616 236 337 0 51 chr11 4125614 4125792 -117718064 + (TATG)n Simple_repeat Simple_repeat 1 169 0 2 616 869 289 30 4 chr11 4125828 4126095 -117717761 - B4A SINE B4 -18 274 1 2 616 1135 69 0 20 chr11 4126137 4126285 -117717571 - B1_Mm SINE Alu 0 147 3 2 616 814 221 53 43 chr11 4126285 4126493 -117717363 - B3 SINE B2 -6 210 1 2 616 461 182 10 39 chr11 4126542 4126645 -117717211 - PB1D10 SINE Alu 0 117 18 2 616 354 284 83 22 chr11 4126703 4126883 -117716973 - L1MB7 LINE L1 -133 6051 5861 2 616 773 101 3 4 chr11 4126927 4127048 -117716808 - B3 SINE B2 -73 120 1 2 616 474 118 0 0 chr11 4127464 4127557 -117716299 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 616 378 102 68 0 chr11 4127558 4127617 -117716239 - B1_Mus2 SINE Alu -13 134 72 2 616 309 51 0 0 chr11 4127618 4127657 -117716199 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 616 1008 139 0 0 chr11 4127657 4127801 -117716055 - B1_Mus2 SINE Alu -2 145 2 2 616 834 296 62 0 chr11 4127856 4128045 -117715811 + B4A SINE B4 20 223 -69 2 616 473 32 16 0 chr11 4128045 4128108 -117715748 + (CATA)n Simple_repeat Simple_repeat 2 65 0 2 616 834 296 62 0 chr11 4128108 4128158 -117715698 + B4A SINE B4 224 273 -19 2 616 441 0 0 0 chr11 4128158 4128207 -117715649 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 616 207 100 0 0 chr11 4128422 4128452 -117715404 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2 616 254 352 105 0 chr11 4129062 4129167 -117714689 + MIRb SINE MIR 119 234 -34 2 616 566 243 195 0 chr11 4129263 4129448 -117714408 + ID_B1 SINE B4 2 222 -2 2 616 246 32 0 0 chr11 4129451 4129482 -117714374 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 616 356 204 0 30 chr11 4130475 4130510 -117713346 + T-rich Low_complexity Low_complexity 66 98 0 2 616 1001 152 0 0 chr11 4130510 4130655 -117713201 - B1_Mur4 SINE Alu -4 146 2 2 616 356 204 0 30 chr11 4130655 4130720 -117713136 + T-rich Low_complexity Low_complexity 1 65 0 2 616 440 257 72 18 chr11 4131344 4131455 -117712401 + B1F SINE Alu 2 118 -31 2 616 785 215 0 0 chr11 4131724 4131873 -117711983 - B1_Mur4 SINE Alu -1 149 1 2 616 425 189 11 0 chr11 4131915 4132010 -117711846 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 616 1344 92 49 0 chr11 4132142 4132326 -117711530 - B2_Mm1t SINE B2 0 193 1 2 616 460 289 49 7 chr11 4132329 4132472 -117711384 - ID_B1 SINE B4 0 224 76 2 616 754 289 75 43 chr11 4133169 4133447 -117710409 + B4A SINE B4 1 287 -5 2 616 230 204 32 11 chr11 4133472 4133566 -117710290 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 616 354 274 44 13 chr11 4133621 4133780 -117710076 + (CA)n Simple_repeat Simple_repeat 2 165 0 2 616 398 94 16 0 chr11 4133793 4133857 -117709999 + (CATA)n Simple_repeat Simple_repeat 1 65 0 2 616 366 280 35 123 chr11 4133992 4134014 -117709842 + B4 SINE B4 70 182 -110 2 616 785 203 0 0 chr11 4134014 4134157 -117709699 + B1_Mus1 SINE Alu 6 148 0 2 616 338 322 28 7 chr11 4134262 4134406 -117709450 + B1F SINE Alu 1 147 -2 2 616 296 303 11 0 chr11 4134678 4134767 -117709089 + MER2B DNA MER2_type 205 294 -42 2 616 191 32 0 61 chr11 4135043 4135076 -117708780 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 616 343 234 72 36 chr11 4135099 4135210 -117708646 - PB1D7 SINE Alu -5 115 1 2 616 225 284 73 26 chr11 4136110 4136206 -117707650 - MIRm SINE MIR -147 129 35 2 616 201 147 0 0 chr11 4136739 4136773 -117707083 + (CCCCCT)n Simple_repeat Simple_repeat 6 39 0 2 616 948 46 0 30 chr11 4138682 4138816 -117705040 - B1_Mus2 SINE Alu -2 145 16 2 616 186 43 0 0 chr11 4138816 4138839 -117705017 + (CCA)n Simple_repeat Simple_repeat 2 24 0 2 616 191 95 0 45 chr11 4139107 4139151 -117704705 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 2 616 1216 48 0 7 chr11 4139153 4139301 -117704555 - B1_Mus2 SINE Alu 0 147 1 2 616 296 355 22 7 chr11 4140495 4140631 -117703225 + MIR3 SINE MIR 3 140 -68 2 616 858 66 0 0 chr11 4141163 4141285 -117702571 + (TG)n Simple_repeat Simple_repeat 1 122 0 2 616 746 253 113 12 chr11 4141288 4141536 -117702320 - RMER15 LTR ERVL -5 570 298 2 616 293 368 60 0 chr11 4141676 4141842 -117702014 - B4A SINE B4 -21 271 96 2 616 567 279 75 21 chr11 4141861 4142048 -117701808 - B3A SINE B2 0 198 2 2 616 832 208 10 55 chr11 4142080 4142279 -117701577 - B2_Mm2 SINE B2 -5 190 1 2 616 261 121 24 72 chr11 4142380 4142505 -117701351 + T-rich Low_complexity Low_complexity 1 119 0 2 616 981 61 0 15 chr11 4142507 4142640 -117701216 - B1_Mus1 SINE Alu 0 148 18 2 616 246 174 0 0 chr11 4142962 4143008 -117700848 + CT-rich Low_complexity Low_complexity 1 46 0 2 616 716 214 0 27 chr11 4143012 4143161 -117700695 - B1_Mus1 SINE Alu -1 147 3 2 616 410 240 96 0 chr11 4143199 4143303 -117700553 - B1_Mur1 SINE Alu -26 123 10 2 616 269 235 65 47 chr11 4143215 4143322 -117700534 - MT2B LTR ERVL -341 260 152 2 616 33 25 0 0 chr11 4143390 4143430 -117700426 + AT_rich Low_complexity Low_complexity 1 40 0 2 616 705 210 29 0 chr11 4143520 4143658 -117700198 - B1F2 SINE Alu -2 147 6 2 616 328 321 0 84 chr11 4143557 4143676 -117700180 - MT2B LTR ERVL -341 260 152 2 616 995 152 6 0 chr11 4144014 4144192 -117699664 + CT-rich Low_complexity Low_complexity 2 180 0 2 616 860 157 0 36 chr11 4144192 4144331 -117699525 - B1_Mus1 SINE Alu -13 135 2 2 616 1515 78 16 0 chr11 4144595 4144786 -117699070 + B2_Mm2 SINE B2 2 195 0 2 616 706 168 56 49 chr11 4144799 4144943 -117698913 + B1_Mur3 SINE Alu 5 149 0 2 616 327 243 14 0 chr11 4144962 4145032 -117698824 + B1_Mur4 SINE Alu 2 72 -78 2 616 297 0 0 0 chr11 4145113 4145146 -117698710 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 616 22 56 0 0 chr11 4145209 4145245 -117698611 + AT_rich Low_complexity Low_complexity 1 36 0 2 616 871 159 34 25 chr11 4145327 4145516 -117698340 - B3 SINE B2 0 216 22 2 616 725 128 168 0 chr11 4145543 4145668 -117698188 - B1_Mm SINE Alu 0 147 2 2 616 241 152 85 0 chr11 4145923 4145982 -117697874 + B3 SINE B2 2 65 -151 2 616 228 170 18 36 chr11 4146217 4146272 -117697584 - RLTR11A LTR ERVK -352 176 123 2 616 748 213 220 51 chr11 4146484 4146834 -117697022 + MTD LTR MaLR 11 419 0 2 616 291 250 0 0 chr11 4146971 4147055 -117696801 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 616 1053 74 0 139 chr11 4147891 4147963 -117695893 + B1_Mus1 SINE Alu 1 65 -83 2 616 279 0 0 0 chr11 4147963 4147994 -117695862 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 616 1236 55 0 0 chr11 4147994 4148139 -117695717 - B1_Mus2 SINE Alu -2 145 1 2 616 1053 74 0 139 chr11 4148139 4148237 -117695619 + B1_Mus1 SINE Alu 66 147 -1 2 616 657 257 30 110 chr11 4148638 4148813 -117695043 - RMER5 LTR ERV1 -1 533 361 3 616 1201 93 48 32 chr11 4148813 4149001 -117694855 + B2_Mm2 SINE B2 3 193 -2 3 616 657 257 30 110 chr11 4149001 4149061 -117694795 - RMER5 LTR ERV1 -174 360 317 3 616 324 0 0 0 chr11 4149062 4149098 -117694758 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 616 180 111 0 0 chr11 4149794 4149821 -117694035 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3 616 1253 54 0 0 chr11 4149821 4149969 -117693887 - B1_Mus1 SINE Alu 0 148 1 3 616 343 317 0 0 chr11 4150073 4150155 -117693701 + ID4 SINE ID 1 82 -1 3 616 598 250 37 37 chr11 4150925 4151116 -117692740 + B3A SINE B2 2 192 -6 3 616 1289 167 169 74 chr11 4152273 4152289 -117691567 - ORR1C2 LTR MaLR -1 383 374 3 616 3343 97 21 35 chr11 4152289 4152771 -117691085 + MT2C_Mm LTR ERVL 1 475 0 3 616 1289 167 169 74 chr11 4152771 4152935 -117690921 - ORR1C2 LTR MaLR -11 373 173 3 616 414 0 0 0 chr11 4152935 4152981 -117690875 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 616 1289 167 169 74 chr11 4152981 4153149 -117690707 - ORR1C2 LTR MaLR -212 172 2 3 616 234 186 35 98 chr11 4153428 4153601 -117690255 + (CCCTG)n Simple_repeat Simple_repeat 4 165 0 3 616 561 300 31 0 chr11 4154389 4154573 -117689283 + B3 SINE B2 1 195 -3 3 616 262 263 26 0 chr11 4154742 4154818 -117689038 - ID4 SINE ID -1 82 5 3 616 245 277 0 30 chr11 4154834 4154901 -117688955 - PB1D10 SINE Alu 0 117 53 3 616 240 132 0 0 chr11 4154945 4154960 -117688896 + (A)n Simple_repeat Simple_repeat 1 15 0 3 616 1190 68 0 0 chr11 4154960 4155107 -117688749 + B1_Mus2 SINE Alu 1 147 0 3 616 240 132 0 0 chr11 4155107 4155144 -117688712 + (A)n Simple_repeat Simple_repeat 1 37 0 3 616 214 100 60 0 chr11 4155212 4155262 -117688594 + T-rich Low_complexity Low_complexity 2 54 0 3 616 1407 78 10 10 chr11 4155276 4155470 -117688386 + B2_Mm2 SINE B2 1 194 -1 3 616 680 130 51 16 chr11 4155478 4155623 -117688233 + B1_Mur3 SINE Alu 13 146 -2 3 616 515 318 68 7 chr11 4155624 4155802 -117688054 - B3A SINE B2 0 195 1 3 616 694 230 169 0 chr11 4155831 4156009 -117687847 - B3 SINE B2 -6 210 3 3 616 611 255 144 15 chr11 4156012 4156207 -117687649 - B4A SINE B4 -62 230 11 3 616 825 71 69 30 chr11 4156246 4156377 -117687479 - B1_Mur4 SINE Alu -6 144 9 3 616 390 182 27 116 chr11 4156278 4156390 -117687466 - MT2B LTR ERVL -344 257 156 3 616 349 200 0 28 chr11 4156711 4156819 -117687037 + CT-rich Low_complexity Low_complexity 4 108 0 3 616 220 316 45 45 chr11 4158493 4158657 -117685199 + MIRb SINE MIR 34 197 -71 3 616 215 325 15 47 chr11 4159218 4159355 -117684501 + MIRc SINE MIR 71 206 -2 3 616 265 336 44 44 chr11 4159349 4159486 -117684370 - MIRb SINE MIR -110 158 22 3 616 217 271 107 45 chr11 4159962 4160074 -117683782 + MIR3 SINE MIR 86 204 -4 3 616 232 245 0 0 chr11 4160967 4161016 -117682840 + (CATG)n Simple_repeat Simple_repeat 4 52 0 3 616 456 19 0 0 chr11 4161098 4161151 -117682705 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 616 209 203 85 0 chr11 4162492 4162551 -117681305 - MIRc SINE MIR -125 143 80 3 616 225 0 0 0 chr11 4162936 4162961 -117680895 + (G)n Simple_repeat Simple_repeat 1 25 0 3 616 504 0 0 0 chr11 4163373 4163429 -117680427 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 616 201 298 0 17 chr11 4166351 4166409 -117677447 + C-rich Low_complexity Low_complexity 2 58 0 3 616 395 0 40 0 chr11 4169606 4169656 -117674200 + (CTCA)n Simple_repeat Simple_repeat 1 52 0 3 616 369 0 0 0 chr11 4169843 4169884 -117673972 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 3 616 419 128 0 21 chr11 4170739 4170835 -117673021 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 3 616 27 62 0 0 chr11 4172407 4172455 -117671401 + AT_rich Low_complexity Low_complexity 1 48 0 3 616 391 352 83 30 chr11 4174934 4175198 -117668658 - L4 LINE RTE -9 2020 1743 3 616 1003 126 0 7 chr11 4175628 4175772 -117668084 - B1_Mus1 SINE Alu -5 143 1 3 616 798 282 12 100 chr11 4175817 4176136 -117667720 - B4A SINE B4 0 292 2 3 616 820 244 119 0 chr11 4177404 4177597 -117666259 + B3 SINE B2 1 216 0 3 616 239 275 163 11 chr11 4177723 4177815 -117666041 + MLT1A1 LTR MaLR 299 404 -4 3 616 509 224 36 29 chr11 4178707 4178845 -117665011 + B1F SINE Alu 2 140 -9 3 616 261 0 0 0 chr11 4178918 4178947 -117664909 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 616 972 120 0 0 chr11 4179217 4179350 -117664506 - B1_Mus1 SINE Alu -14 134 2 3 616 344 284 56 84 chr11 4180920 4181135 -117662721 + L1MC4 LINE L1 2036 2244 -3971 3 616 370 336 86 18 chr11 4181483 4181704 -117662152 + MIRb SINE MIR 30 265 -3 3 616 233 125 35 18 chr11 4181850 4181907 -117661949 + T-rich Low_complexity Low_complexity 4 61 0 3 616 463 317 61 6 chr11 4181907 4182072 -117661784 + MER58A DNA MER1_type 50 223 -1 3 616 585 0 0 0 chr11 4183471 4183536 -117660320 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 616 289 186 102 0 chr11 4184174 4184233 -117659623 + RSINE1 SINE B4 3 67 -98 3 616 250 289 31 62 chr11 4184909 4185005 -117658851 + MLT1D LTR MaLR 64 156 -349 3 616 289 286 46 28 chr11 4185025 4185133 -117658723 + MLT1D LTR MaLR 393 502 -3 3 616 303 28 0 0 chr11 4185193 4185229 -117658627 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 616 488 295 216 4 chr11 4187643 4187898 -117655958 + MER21B LTR ERV1 274 582 -281 3 616 316 45 0 43 chr11 4188266 4188313 -117655543 - HAL1-3A_ME LINE L1 -840 2018 1974 3 616 243 213 0 0 chr11 4188313 4188388 -117655468 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 616 744 169 0 0 chr11 4188403 4188581 -117655275 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 616 492 171 0 0 chr11 4188598 4188709 -117655147 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 616 247 182 23 0 chr11 4188709 4188753 -117655103 - ID SINE ID -162 62 18 3 616 333 286 48 43 chr11 4189898 4190036 -117653820 - PB1D7 SINE Alu -24 125 1 3 616 342 285 41 14 chr11 4190047 4190193 -117653663 - L1MB8 LINE L1 0 6178 6029 3 616 882 108 0 48 chr11 4190382 4190395 -117653461 - B1_Mus2 SINE Alu 0 147 136 3 616 207 0 0 0 chr11 4190395 4190418 -117653438 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 616 882 113 1 47 chr11 4190418 4190561 -117653295 - B1_Mus2 SINE Alu -12 135 1 3 616 468 176 0 112 chr11 4190445 4190579 -117653277 - MT2B LTR ERVL -336 265 147 3 616 714 273 75 5 chr11 4190640 4190828 -117653028 - ID_B1 SINE B4 0 224 24 3 616 314 290 11 0 chr11 4190847 4190940 -117652916 - L1MB8 LINE L1 -450 5728 5635 3 616 290 28 0 0 chr11 4191522 4191558 -117652298 + U2 snRNA snRNA 1 36 -152 3 616 303 304 63 35 chr11 4192040 4192196 -117651660 - MIRc SINE MIR -81 195 34 3 616 239 349 56 9 chr11 4193149 4193256 -117650600 + PB1D7 SINE Alu 4 115 -5 3 617 195 231 0 0 chr11 4194638 4194677 -117649179 + MIR SINE MIR 79 117 -145 3 617 188 321 47 60 chr11 4195246 4195395 -117648461 + MIR SINE MIR 51 197 -65 3 617 220 111 44 0 chr11 4195854 4195899 -117647957 + CT-rich Low_complexity Low_complexity 2 48 0 3 617 584 267 73 17 chr11 4195975 4196154 -117647702 - B3A SINE B2 -7 191 3 3 617 566 221 179 30 chr11 4196154 4196345 -117647511 - B4A SINE B4 -69 223 3 3 617 394 321 240 0 chr11 4196351 4196626 -117647230 - L1MB2 LINE L1 -46 6137 5797 3 617 340 379 35 6 chr11 4197932 4198102 -117645754 + MIR3 SINE MIR 23 197 -11 3 617 405 0 0 0 chr11 4198262 4198307 -117645549 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 617 854 125 281 18 chr11 4198330 4198501 -117645355 - B3 SINE B2 0 216 1 3 617 220 195 0 24 chr11 4200715 4200757 -117643099 - MIRm SINE MIR -123 153 113 3 617 1328 82 37 37 chr11 4201411 4201601 -117642255 - B2_Mm2 SINE B2 -3 192 3 3 617 231 36 0 0 chr11 4201899 4201927 -117641929 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 617 440 302 84 42 chr11 4201961 4202127 -117641729 - ID_B1 SINE B4 -14 210 38 3 617 741 157 49 14 chr11 4202190 4202332 -117641524 - B1_Mur2 SINE Alu -1 148 2 3 617 197 329 28 21 chr11 4203161 4203274 -117640582 + L2c LINE L2 3264 3386 -1 3 617 198 103 0 0 chr11 4203960 4203989 -117639867 + (A)n Simple_repeat Simple_repeat 1 29 0 3 617 517 301 113 9 chr11 4204300 4204531 -117639325 + MLT1C LTR MaLR 158 412 -55 3 617 347 250 48 0 chr11 4204540 4204644 -117639212 - PB1D10 SINE Alu 0 117 9 3 617 255 259 0 0 chr11 4204665 4204719 -117639137 + MLT1C LTR MaLR 413 466 -1 3 617 364 184 13 26 chr11 4204966 4205044 -117638812 + Lx6 LINE L1 7378 7454 -6 3 617 22 35 0 0 chr11 4205139 4205168 -117638688 + AT_rich Low_complexity Low_complexity 1 29 0 3 617 257 0 0 29 chr11 4206043 4206077 -117637779 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 617 904 209 56 20 chr11 4206181 4206376 -117637480 + B3 SINE B2 2 203 -13 3 617 231 36 0 0 chr11 4206379 4206407 -117637449 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 617 462 311 41 35 chr11 4206803 4206973 -117636883 - ID_B1 SINE B4 -17 207 37 3 617 682 214 25 17 chr11 4207196 4207379 -117636477 - B3 SINE B2 -10 185 1 3 617 315 0 0 0 chr11 4207720 4207755 -117636101 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 617 255 157 0 0 chr11 4207807 4207858 -117635998 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 3 617 552 191 85 9 chr11 4207860 4207966 -117635890 - PB1D9 SINE Alu -6 114 1 3 617 595 226 0 55 chr11 4209560 4209705 -117634151 - B1_Mur1 SINE Alu 0 149 13 3 617 219 240 133 0 chr11 4209788 4209863 -117633993 + MIR SINE MIR 62 146 -62 3 617 372 94 0 0 chr11 4210313 4210366 -117633490 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 617 1004 220 5 10 chr11 4210452 4210654 -117633202 - B3 SINE B2 -15 201 1 4 617 291 340 97 36 chr11 4210664 4210694 -117633162 - B3 SINE B2 0 216 10 4 617 570 243 18 79 chr11 4210694 4210859 -117632997 - RSINE1 SINE B4 0 165 11 4 617 302 332 62 58 chr11 4212054 4212297 -117631559 - MERVK26-int LTR ERVK -160 6759 6516 4 617 295 333 9 0 chr11 4212208 4212319 -117631537 - RodERV21-int LTR ERV1 -463 4528 4417 4 617 309 200 46 0 chr11 4212355 4212420 -117631436 - RLTR42-int LTR ERVK -2029 4108 4041 4 617 257 213 49 0 chr11 4212980 4213041 -117630815 - RLTR42-int LTR ERVK -2897 3240 3177 4 617 2226 62 109 13 chr11 4213366 4213678 -117630178 - L1Md_F2 LINE L1 0 6582 6241 4 617 1192 42 0 0 chr11 4213678 4213822 -117630034 + L1Md_F2 LINE L1 6113 6256 -326 4 617 1049 15 0 0 chr11 4214721 4214851 -117629005 - B1_Mus2 SINE Alu -9 138 9 4 617 236 152 15 0 chr11 4215651 4215717 -117628139 + CT-rich Low_complexity Low_complexity 1 67 0 4 617 575 208 90 30 chr11 4215717 4215851 -117628005 - B1_Mur2 SINE Alu -6 143 2 4 617 536 167 9 0 chr11 4215863 4215971 -117627885 - RLTR42-int LTR ERVK -3210 2312 2204 4 617 2132 176 103 36 chr11 4215972 4216416 -117627440 + RLTR20B2 LTR ERVK 1 469 -91 4 617 342 121 0 0 chr11 4216416 4216482 -117627374 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 4 617 2132 176 103 36 chr11 4216482 4216562 -117627294 + RLTR20B2 LTR ERVK 470 560 0 4 617 1247 174 35 146 chr11 4216562 4216939 -117626917 - RLTR42-int LTR ERVK -3314 2208 1874 4 617 351 154 0 15 chr11 4217234 4217300 -117626556 - RLTR42-int LTR ERVK -3922 1600 1536 4 617 759 241 4 52 chr11 4217375 4217607 -117626249 - RLTR42-int LTR ERVK -3988 1534 1314 4 617 502 182 62 18 chr11 4217640 4217752 -117626104 - RLTR42-int LTR ERVK -4204 1318 1202 4 617 576 0 0 0 chr11 4218422 4218486 -117625370 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 617 282 197 61 0 chr11 4219685 4219751 -117624105 + RSINE1 SINE B4 87 156 -9 4 617 1014 224 5 14 chr11 4219857 4220074 -117623782 - B3 SINE B2 0 216 2 4 617 647 138 190 0 chr11 4220077 4220193 -117623663 - B1_Mur3 SINE Alu -11 138 1 4 617 5643 35 0 9 chr11 4220219 4220881 -117622975 - L1Md_F2 LINE L1 0 6582 5927 4 617 310 260 42 118 chr11 4220976 4221120 -117622736 - RSINE1 SINE B4 -30 135 3 4 617 468 182 0 32 chr11 4221188 4221313 -117622543 + CT-rich Low_complexity Low_complexity 4 124 0 4 617 459 0 0 0 chr11 4222141 4222192 -117621664 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 617 225 326 0 75 chr11 4222206 4222299 -117621557 - MTEa LTR MaLR -291 88 3 4 617 869 144 0 22 chr11 4222495 4222679 -117621177 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 617 211 257 28 14 chr11 4223849 4223920 -117619936 + PB1D7 SINE Alu 41 112 -8 4 617 1640 21 0 15 chr11 4223954 4224149 -117619707 - B2_Mm1a SINE B2 0 193 2 4 617 1009 0 0 0 chr11 4224151 4224258 -117619598 - U6 snRNA snRNA 0 107 1 4 617 556 86 0 31 chr11 4224420 4224516 -117619340 - Lx2A LINE L1 -6 7002 6910 4 617 387 0 0 0 chr11 4224650 4224693 -117619163 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 617 789 260 95 29 chr11 4224700 4225048 -117618808 - L1MB3 LINE L1 -48 6135 5765 4 617 599 261 80 0 chr11 4225312 4225500 -117618356 - B3 SINE B2 -9 207 5 4 617 877 222 82 0 chr11 4225520 4225714 -117618142 - B3 SINE B2 -6 210 1 4 617 27 29 0 0 chr11 4225815 4225849 -117618007 + AT_rich Low_complexity Low_complexity 1 34 0 4 617 1307 63 8 4 chr11 4225976 4226214 -117617642 + (TTTC)n Simple_repeat Simple_repeat 1 238 0 4 617 2557 55 29 145 chr11 4226225 4226407 -117617449 - L1_Mus3 LINE L1 0 6638 6478 4 617 1463 74 5 0 chr11 4226407 4226596 -117617260 + B2_Mm1a SINE B2 3 192 -1 4 617 2557 55 29 145 chr11 4226596 4226862 -117616994 - L1_Mus3 LINE L1 -161 6477 6242 4 617 903 119 0 0 chr11 4226863 4226997 -117616859 + L1_Mus3 LINE L1 6006 6139 -499 4 617 200 35 35 0 chr11 4226997 4227026 -117616830 + (CATATA)n Simple_repeat Simple_repeat 1 30 0 4 617 24 0 0 0 chr11 4227026 4227050 -117616806 + AT_rich Low_complexity Low_complexity 1 24 0 4 617 1115 109 0 0 chr11 4227050 4227197 -117616659 - B1_Mus1 SINE Alu 0 148 2 4 617 888 159 50 28 chr11 4227203 4227329 -117616527 - RMER1C Other Other -13 1329 1200 4 617 1041 118 11 6 chr11 4227329 4227508 -117616348 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 617 888 159 50 28 chr11 4227508 4227562 -117616294 - RMER1C Other Other -143 1199 1145 4 617 705 248 6 0 chr11 4227674 4227831 -117616025 - RSINE1 SINE B4 -4 161 4 4 617 1633 37 0 0 chr11 4227934 4228124 -117615732 - B2_Mm1a SINE B2 -2 191 2 4 617 784 266 236 17 chr11 4228280 4228306 -117615550 + MTD LTR MaLR 1 26 -393 4 617 1932 125 62 73 chr11 4228306 4228677 -117615179 + ORR1B2 LTR MaLR 1 367 0 4 617 784 266 236 17 chr11 4228677 4228994 -117614862 + MTD LTR MaLR 27 419 0 4 617 399 255 151 0 chr11 4229016 4229122 -117614734 + RSINE1 SINE B4 28 149 -16 4 617 233 111 0 0 chr11 4230269 4230305 -117613551 + B2_Mm2 SINE B2 5 40 -155 4 617 3468 79 0 0 chr11 4230305 4230762 -117613094 - L1Md_F2 LINE L1 -457 5426 4970 4 617 1556 73 0 0 chr11 4230760 4230951 -117612905 + L1Md_F2 LINE L1 5396 5586 -297 4 617 7857 65 3 1 chr11 4230952 4231930 -117611926 + L1Md_F2 LINE L1 5588 6567 -15 4 617 925 60 127 7 chr11 4231940 4232090 -117611766 + B2_Mm2 SINE B2 27 194 -1 4 617 1157 72 12 0 chr11 4232111 4232277 -117611579 + B2_Mm2 SINE B2 6 173 -22 4 617 225 94 0 0 chr11 4232279 4232311 -117611545 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 617 712 252 65 25 chr11 4232320 4232484 -117611372 + B3 SINE B2 6 167 -49 4 617 195 129 0 0 chr11 4232484 4232515 -117611341 + (CATA)n Simple_repeat Simple_repeat 4 34 0 4 617 712 252 65 25 chr11 4232515 4232549 -117611307 + B3 SINE B2 168 212 -4 4 617 270 310 59 20 chr11 4234200 4234302 -117609554 + PB1D10 SINE Alu 1 106 -11 4 617 658 286 90 22 chr11 4234900 4235109 -117608747 + B4A SINE B4 1 224 -68 4 617 216 0 0 0 chr11 4235109 4235133 -117608723 + (CAGGA)n Simple_repeat Simple_repeat 5 28 0 4 617 658 286 90 22 chr11 4235133 4235191 -117608665 + B4A SINE B4 225 285 -7 4 617 234 0 0 0 chr11 4235205 4235231 -117608625 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 617 261 0 0 0 chr11 4235231 4235259 -117608597 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 617 586 250 80 0 chr11 4235260 4235436 -117608420 + MIR SINE MIR 15 204 -58 4 617 1098 102 57 6 chr11 4236903 4237080 -117606776 - URR1A DNA MER1_type -1 225 40 4 617 353 250 7 32 chr11 4237300 4237399 -117606457 - PB1D10 SINE Alu 0 117 22 4 617 233 268 23 23 chr11 4237925 4238013 -117605843 + B4A SINE B4 1 88 -204 4 617 250 261 99 33 chr11 4238038 4238129 -117605727 + B4A SINE B4 189 285 -7 4 617 254 235 0 0 chr11 4238135 4238203 -117605653 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 4 617 1669 31 5 0 chr11 4238781 4238973 -117604883 - B2_Mm1t SINE B2 0 193 1 4 617 542 228 89 0 chr11 4239020 4239143 -117604713 - B1F2 SINE Alu -10 139 6 4 617 209 224 0 39 chr11 4240548 4240599 -117603257 - L2c LINE L2 -4 3383 3335 4 617 1334 90 21 0 chr11 4240667 4240855 -117603001 + B2_Mm2 SINE B2 1 192 -3 4 617 2335 208 37 18 chr11 4240977 4241517 -117602339 + Lx5 LINE L1 6501 7054 -4 4 617 340 306 66 54 chr11 4241685 4241851 -117602005 - MIR SINE MIR -5 257 90 4 617 742 256 31 58 chr11 4242622 4242879 -117600977 + B4A SINE B4 42 291 -1 4 617 249 33 0 0 chr11 4242880 4242910 -117600946 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 617 213 336 76 28 chr11 4242920 4243064 -117600792 - MIRb SINE MIR -14 254 104 4 617 345 201 0 0 chr11 4243158 4243226 -117600630 - B1F1 SINE Alu -47 70 3 4 617 198 0 0 0 chr11 4243406 4243428 -117600428 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4 617 529 117 74 46 chr11 4243706 4243814 -117600042 + B1_Mur4 SINE Alu 6 116 -34 4 617 243 259 17 0 chr11 4244353 4244411 -117599445 + CT-rich Low_complexity Low_complexity 1 59 0 4 617 294 293 87 36 chr11 4244884 4245079 -117598777 - L3 LINE CR1 -107 4382 4178 4 617 557 231 47 40 chr11 4245590 4245739 -117598117 + RSINE1 SINE B4 16 165 0 4 617 1231 27 0 20 chr11 4247427 4247576 -117596280 + B1_Mus2 SINE Alu 1 146 -1 4 617 253 203 174 0 chr11 4248308 4248377 -117595479 - B3 SINE B2 0 216 136 4 617 377 248 114 0 chr11 4248436 4248541 -117595315 + B3A SINE B2 5 121 -77 4 617 396 243 122 0 chr11 4248637 4248744 -117595112 + PB1D7 SINE Alu 1 120 0 4 617 8211 48 4 5 chr11 4248775 4249833 -117594023 - L1Md_F2 LINE L1 -1 6581 5525 4 617 220 261 16 16 chr11 4250180 4250257 -117593599 + CT-rich Low_complexity Low_complexity 1 77 0 4 617 1307 149 21 13 chr11 4250518 4250756 -117593100 + Lx9 LINE L1 7286 7525 -119 4 617 762 284 189 39 chr11 4251447 4251827 -117592029 + MER21B LTR ERV1 377 813 -50 4 617 227 257 71 0 chr11 4251827 4251897 -117591959 + B4A SINE B4 1 75 -217 4 617 465 287 34 20 chr11 4251936 4252082 -117591774 + B4A SINE B4 143 290 -2 4 617 465 66 0 0 chr11 4252105 4252166 -117591690 + (CATA)n Simple_repeat Simple_repeat 4 64 0 4 617 271 305 70 57 chr11 4252733 4253049 -117590807 - L2 LINE L2 -1041 2378 2059 4 617 731 193 21 0 chr11 4254246 4254386 -117589470 + B1_Mur1 SINE Alu 1 143 -6 4 617 978 63 43 19 chr11 4254689 4254851 -117589005 + MusHAL1 LINE L1 1921 2086 -626 4 617 276 27 0 0 chr11 4255106 4255143 -117588713 + B2_Mm2 SINE B2 2 38 -157 4 617 1262 69 0 7 chr11 4256162 4256452 -117587404 + (TCC)n Simple_repeat Simple_repeat 1 288 0 4 617 341 190 139 0 chr11 4256459 4256538 -117587318 - B1_Mur2 SINE Alu -20 129 40 4 617 300 349 106 0 chr11 4256544 4256743 -117587113 - MER47B DNA MER2_type -3 415 140 4 617 14710 255 93 78 chr11 4256858 4257640 -117586216 + Lx7 LINE L1 716 1531 -4349 4 617 384 40 0 0 chr11 4257640 4257690 -117586166 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 4 617 14710 199 73 88 chr11 4257690 4258817 -117585039 + Lx7 LINE L1 1532 2687 -3193 4 617 236 83 0 0 chr11 4258817 4258853 -117585003 - U2 snRNA snRNA -152 36 1 4 617 14710 199 73 88 chr11 4258853 4259290 -117584566 + Lx7 LINE L1 2688 3137 -2743 4 617 1331 96 37 11 chr11 4259290 4259480 -117584376 + B2_Mm2 SINE B2 1 195 0 4 617 14710 199 73 88 chr11 4259480 4260135 -117583721 + Lx7 LINE L1 3138 3812 -2068 4 617 850 150 50 6 chr11 4260135 4260296 -117583560 - URR1A DNA MER1_type 0 226 59 4 617 14710 199 73 88 chr11 4260296 4261989 -117581867 + Lx7 LINE L1 3813 5559 -321 4 617 877 179 0 7 chr11 4261989 4262135 -117581721 + B1_Mus1 SINE Alu 2 146 -2 4 617 14710 221 60 62 chr11 4262135 4262720 -117581136 + Lx7 LINE L1 5560 6255 -1441 4 617 2336 273 150 65 chr11 4262831 4263873 -117579983 - Lx8 LINE L1 -29 7444 6242 4 617 3284 43 8 2 chr11 4263873 4264267 -117579589 + MTA_Mm LTR MaLR 1 396 0 5 617 2336 264 147 70 chr11 4264267 4264736 -117579120 - Lx8 LINE L1 -1227 6246 5753 4 617 1668 27 0 0 chr11 4264747 4264934 -117578922 + B2_Mm1a SINE B2 2 188 -5 5 617 393 260 10 10 chr11 4264934 4265035 -117578821 + Lx7 LINE L1 7127 7227 -469 5 617 277 255 31 41 chr11 4265286 4265384 -117578472 - Lx8 LINE L1 -1277 6196 6100 5 617 1119 194 40 0 chr11 4265396 4265618 -117578238 - Lx8 LINE L1 -179 5701 5471 5 617 577 302 18 55 chr11 4265625 4265842 -117578014 + MTD LTR MaLR 1 209 -210 5 617 1044 147 46 16 chr11 4265844 4266038 -117577818 + B3 SINE B2 15 214 -2 5 617 786 209 122 11 chr11 4266042 4266231 -117577625 + MTD LTR MaLR 196 405 -14 5 617 449 306 57 73 chr11 4266696 4266943 -117576913 + MLT1D LTR MaLR 1 243 -262 5 617 747 0 0 0 chr11 4267570 4267653 -117576203 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 5 617 609 226 0 88 chr11 4267653 4267802 -117576054 - B1_Mur1 SINE Alu -11 138 3 5 617 431 285 87 7 chr11 4267937 4268075 -117575781 + RSINE1 SINE B4 4 152 -13 5 617 642 204 17 40 chr11 4268274 4268448 -117575408 - MTC LTR MaLR -6 415 246 5 617 610 178 85 0 chr11 4268468 4268586 -117575270 - B3 SINE B2 -86 130 3 5 617 1288 136 68 53 chr11 4268586 4268785 -117575071 - MTC LTR MaLR -218 203 1 5 617 324 265 86 26 chr11 4268865 4269016 -117574840 + L1MB3 LINE L1 5971 6130 -53 5 617 328 277 58 8 chr11 4269034 4269154 -117574702 + B1F1 SINE Alu 15 140 -9 5 617 21 36 0 0 chr11 4269465 4269493 -117574363 + AT_rich Low_complexity Low_complexity 1 28 0 5 617 384 279 48 48 chr11 4269538 4269685 -117574171 - RSINE1 SINE B4 -16 149 3 5 617 238 324 14 0 chr11 4269908 4269979 -117573877 - B4A SINE B4 -214 78 7 5 617 504 0 0 0 chr11 4269999 4270055 -117573801 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 617 452 257 20 41 chr11 4270124 4270270 -117573586 + B3 SINE B2 2 144 -72 5 617 704 94 0 9 chr11 4270455 4270562 -117573294 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 5 617 648 0 0 0 chr11 4270563 4270635 -117573221 + (GAGAA)n Simple_repeat Simple_repeat 2 73 0 5 617 671 225 14 0 chr11 4270757 4270895 -117572961 + B1_Mur2 SINE Alu 5 144 -5 5 617 27 0 0 0 chr11 4270945 4270972 -117572884 + AT_rich Low_complexity Low_complexity 1 27 0 5 617 416 271 180 0 chr11 4270990 4271112 -117572744 - RSINE1 SINE B4 -19 146 3 5 617 775 183 178 0 chr11 4271141 4271321 -117572535 - B3 SINE B2 0 216 5 5 617 483 18 0 0 chr11 4271453 4271509 -117572347 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 617 308 259 68 34 chr11 4271509 4271597 -117572259 + PB1D9 SINE Alu 30 120 0 5 617 1494 73 16 0 chr11 4271657 4271848 -117572008 + B2_Mm2 SINE B2 2 195 0 5 617 25 31 0 0 chr11 4274600 4274632 -117569224 + AT_rich Low_complexity Low_complexity 1 32 0 5 617 461 290 167 0 chr11 4274632 4274770 -117569086 - RSINE1 SINE B4 -4 161 1 5 617 1483 33 49 0 chr11 4275209 4275393 -117568463 + B2_Mm1a SINE B2 1 193 0 5 617 201 156 0 0 chr11 4275594 4275626 -117568230 + A-rich Low_complexity Low_complexity 3 34 0 5 617 1206 136 21 71 chr11 4275995 4276233 -117567623 - URR1A DNA MER1_type 0 226 1 5 617 510 277 137 50 chr11 4277396 4277762 -117566094 + L1MC4a LINE L1 6457 6930 -1112 5 617 382 289 151 38 chr11 4277856 4278226 -117565630 + L1MC4a LINE L1 7232 7643 -399 5 617 354 354 45 6 chr11 4278432 4278608 -117565248 + L1MC4a LINE L1 7685 7867 -175 5 617 679 100 0 18 chr11 4278928 4279040 -117564816 + (TCC)n Simple_repeat Simple_repeat 3 112 0 5 617 1144 61 0 0 chr11 4279044 4279191 -117564665 - B1_Mus1 SINE Alu 0 148 2 5 617 241 293 87 31 chr11 4279289 4279416 -117564440 - L2 LINE L2 -734 2685 2552 5 617 656 101 30 0 chr11 4279426 4279525 -117564331 - B1_Mur4 SINE Alu 0 150 49 5 617 313 214 29 0 chr11 4279593 4279663 -117564193 + MTE2a LTR MaLR 1 72 -307 5 617 342 157 29 22 chr11 4279655 4279751 -117564105 + MTE2a LTR MaLR 280 377 -2 5 617 709 215 37 0 chr11 4281102 4281237 -117562619 + B3A SINE B2 2 141 -57 5 617 414 0 0 0 chr11 4281237 4281283 -117562573 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 617 228 261 0 0 chr11 4281555 4281601 -117562255 + B1F2 SINE Alu 1 46 -103 5 617 305 111 32 0 chr11 4281653 4281716 -117562140 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 5 617 623 313 75 36 chr11 4281751 4282414 -117561442 + HAL1 LINE L1 968 1656 -851 5 617 264 297 54 0 chr11 4282527 4282601 -117561255 + MER3 DNA MER1_type 1 78 -131 5 617 760 246 22 49 chr11 4282750 4282934 -117560922 + B3A SINE B2 13 191 -7 5 617 232 231 94 82 chr11 4282957 4283042 -117560814 + MT2B LTR ERVL 178 263 -338 5 617 489 222 22 0 chr11 4282983 4283073 -117560783 + B1F2 SINE Alu 49 140 -9 5 617 718 150 33 0 chr11 4283217 4283337 -117560519 - B1_Mur2 SINE Alu -20 129 6 5 617 301 329 91 32 chr11 4283231 4283385 -117560471 - B4 SINE B4 -88 204 42 5 617 299 268 188 14 chr11 4283419 4283627 -117560229 - L1M5 LINE L1 -337 5842 5599 5 617 716 124 136 23 chr11 4283851 4283983 -117559873 + B1_Mus1 SINE Alu 1 147 -1 5 617 393 133 5 21 chr11 4284268 4284350 -117559506 + B1_Mm SINE Alu 31 135 -12 5 617 762 11 0 0 chr11 4284350 4284437 -117559419 + (GAA)n Simple_repeat Simple_repeat 2 88 0 5 617 427 301 18 0 chr11 4284444 4284557 -117559299 + PB1D10 SINE Alu 1 115 -2 5 617 370 309 57 85 chr11 4284558 4284770 -117559086 + L1M4b LINE L1 108 313 -7021 5 617 231 247 161 0 chr11 4285012 4285093 -117558763 + ORR1E LTR MaLR 2 95 -264 5 617 572 234 57 0 chr11 4285637 4285761 -117558095 + B1_Mur1 SINE Alu 19 149 0 5 617 733 261 190 26 chr11 4285792 4286335 -117557521 + L1M4b LINE L1 1156 1787 -5547 5 617 697 118 0 0 chr11 4286860 4286962 -117556894 - B1_Mur4 SINE Alu -1 149 48 5 617 38 18 0 18 chr11 4287000 4287013 -117556843 + AT_rich Low_complexity Low_complexity 1 13 0 5 617 1277 117 11 0 chr11 4287013 4287201 -117556655 - B2_Mm1t SINE B2 -3 190 1 5 617 38 18 0 18 chr11 4287201 4287243 -117556613 + AT_rich Low_complexity Low_complexity 1 42 0 5 617 360 243 114 0 chr11 4287938 4288078 -117555778 + L1M4b LINE L1 2553 2708 -4626 5 617 454 293 90 42 chr11 4288343 4288532 -117555324 + B4A SINE B4 1 198 -94 5 617 429 36 0 0 chr11 4288595 4288650 -117555206 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 617 500 301 49 87 chr11 4288759 4289148 -117554708 + L1M4b LINE L1 2957 3330 -4004 5 617 358 262 263 8 chr11 4289175 4289567 -117554289 + L1M4b LINE L1 3235 3726 -3280 5 617 239 402 17 25 chr11 4289576 4289696 -117554160 + B1_Mm SINE Alu 5 123 -24 5 617 876 135 28 7 chr11 4289735 4289877 -117553979 + B1_Mur4 SINE Alu 6 150 0 5 617 222 150 0 0 chr11 4289877 4289917 -117553939 + (A)n Simple_repeat Simple_repeat 1 40 0 5 617 485 248 60 0 chr11 4289923 4290040 -117553816 + RSINE1 SINE B4 4 127 -38 5 617 378 0 0 0 chr11 4290043 4290085 -117553771 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 617 252 303 15 0 chr11 4290121 4290187 -117553669 + B4 SINE B4 3 69 -223 5 617 369 62 0 0 chr11 4290194 4290242 -117553614 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 5 617 290 230 100 0 chr11 4290434 4290534 -117553322 + L1M4b LINE L1 3771 3880 -3126 5 617 792 270 61 21 chr11 4291727 4292007 -117551849 + B4A SINE B4 2 292 0 5 617 1994 156 93 8 chr11 4292017 4292393 -117551463 + MTC LTR MaLR 3 410 -11 5 617 765 182 24 0 chr11 4292675 4292801 -117551055 - B1_Mur1 SINE Alu -1 148 20 5 617 1798 171 28 76 chr11 4293548 4293941 -117549915 + ORR1D1 LTR MaLR 1 374 0 5 617 751 248 0 27 chr11 4294119 4294268 -117549588 - B1_Mus2 SINE Alu 0 147 3 5 617 390 290 29 29 chr11 4294482 4294497 -117549359 - ID_B1 SINE B4 -41 183 84 5 617 423 259 35 0 chr11 4294497 4294582 -117549274 - PB1D10 SINE Alu -27 90 3 5 617 218 267 0 0 chr11 4295391 4295436 -117548420 + polypyrimidine Low_complexity Low_complexity 2 46 0 5 617 509 62 0 36 chr11 4295439 4295522 -117548334 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 617 203 152 0 0 chr11 4295522 4295555 -117548301 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 617 505 236 62 39 chr11 4295555 4295683 -117548173 - B1F2 SINE Alu -12 137 7 5 617 217 328 75 0 chr11 4295633 4295700 -117548156 - B4A SINE B4 -151 141 70 5 617 395 119 35 35 chr11 4296750 4296837 -117547019 - Lx2 LINE L1 -1 6996 6910 5 617 185 0 40 0 chr11 4296860 4296885 -117546971 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 617 800 18 168 0 chr11 4296886 4296999 -117546857 - B1_Mus1 SINE Alu -6 142 11 5 617 23 0 0 0 chr11 4297446 4297469 -117546387 + AT_rich Low_complexity Low_complexity 1 23 0 5 617 1156 42 14 0 chr11 4297958 4298102 -117545754 + B1_Mm SINE Alu 2 147 0 5 617 613 0 13 13 chr11 4298747 4298825 -117545031 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 617 924 234 43 10 chr11 4299140 4299347 -117544509 + B3 SINE B2 1 214 -2 5 617 231 288 32 63 chr11 4299390 4299453 -117544403 + ID4_ SINE ID 20 80 -3 5 617 345 184 50 50 chr11 4299476 4299556 -117544300 + B1F SINE Alu 41 120 -29 5 617 274 272 38 28 chr11 4299556 4299582 -117544274 + MT2B LTR ERVL 198 304 -297 5 617 585 252 16 0 chr11 4299602 4299729 -117544127 + B1_Mur2 SINE Alu 2 130 -19 5 617 706 245 0 7 chr11 4299878 4300026 -117543830 - B1_Mus1 SINE Alu 0 148 2 5 617 181 182 0 120 chr11 4300096 4300146 -117543710 - MIR3 SINE MIR -21 187 144 5 617 251 172 30 45 chr11 4300208 4300275 -117543581 + (TATG)n Simple_repeat Simple_repeat 3 68 0 5 617 289 309 174 24 chr11 4300647 4300859 -117542997 - ORR1E LTR MaLR -105 254 11 5 617 21 89 0 0 chr11 4300973 4301029 -117542827 + AT_rich Low_complexity Low_complexity 1 56 0 5 617 275 260 41 0 chr11 4301163 4301236 -117542620 + ID4 SINE ID 3 78 -5 5 617 1860 129 124 17 chr11 4301717 4302064 -117541792 + ORR1C2 LTR MaLR 1 384 0 5 617 237 196 0 0 chr11 4302419 4302470 -117541386 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 6 617 357 349 82 67 chr11 4303205 4303607 -117540249 + L1M5 LINE L1 5392 5799 -374 6 617 266 227 30 0 chr11 4303722 4303788 -117540068 - MER96 DNA hAT 0 175 108 6 617 291 28 0 0 chr11 4303957 4303993 -117539863 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 617 218 194 0 0 chr11 4304025 4304061 -117539795 + (TATG)n Simple_repeat Simple_repeat 2 37 0 6 617 2460 146 81 65 chr11 4304346 4304888 -117538968 - RMER17B LTR ERVK -94 864 314 6 617 372 312 51 11 chr11 4304938 4305067 -117538789 + L1M5 LINE L1 5137 5271 -875 6 617 618 243 43 87 chr11 4305067 4305274 -117538582 - B3A SINE B2 0 198 1 6 617 383 300 299 17 chr11 4305274 4305542 -117538314 + L1M5 LINE L1 5272 5615 -625 6 617 1903 157 54 64 chr11 4305542 4305930 -117537926 + ORR1C2 LTR MaLR 1 384 0 6 617 240 220 20 0 chr11 4305997 4306047 -117537809 + PB1D9 SINE Alu 41 91 -29 6 617 297 326 37 112 chr11 4306067 4306174 -117537682 + PB1 SINE Alu 29 127 0 6 617 613 195 16 31 chr11 4306198 4306325 -117537531 + B1_Mur1 SINE Alu 25 149 0 6 617 237 277 61 122 chr11 4306199 4306347 -117537509 + B4 SINE B4 111 249 -43 6 617 337 350 58 7 chr11 4306743 4306881 -117536975 - ID_B1 SINE B4 0 224 80 6 617 336 48 0 0 chr11 4306921 4306963 -117536893 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 617 750 246 39 33 chr11 4306975 4307156 -117536700 - B3A SINE B2 -16 182 1 6 617 704 179 66 22 chr11 4307190 4307327 -117536529 - B1_Mur4 SINE Alu -1 149 7 6 617 1145 160 91 0 chr11 4307679 4307866 -117535990 - B3 SINE B2 -12 204 1 6 617 207 0 0 0 chr11 4307896 4307919 -117535937 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 617 293 283 157 26 chr11 4309399 4309527 -117534329 + MIR SINE MIR 7 151 -125 6 617 266 292 15 0 chr11 4310691 4310756 -117533100 + ID_B1 SINE B4 156 221 -3 6 617 1199 41 0 26 chr11 4310761 4310912 -117532944 + B1_Mus1 SINE Alu 2 148 0 6 617 715 190 35 0 chr11 4311357 4311499 -117532357 + B1_Mus1 SINE Alu 2 148 0 6 617 611 174 201 6 chr11 4311802 4311981 -117531875 - B3 SINE B2 -1 215 2 6 617 180 355 90 51 chr11 4312698 4312789 -117531067 - L2c LINE L2 -170 3217 3122 6 617 4891 82 28 4 chr11 4312789 4313465 -117530391 + Lx3A LINE L1 6274 6965 -16 6 617 270 0 0 0 chr11 4313466 4313496 -117530360 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 6 617 180 355 90 51 chr11 4313496 4313580 -117530276 - L2c LINE L2 -266 3121 3033 6 617 1156 55 7 0 chr11 4313684 4313830 -117530026 - B1_Mm SINE Alu 0 147 1 6 617 1468 44 0 11 chr11 4313938 4314123 -117529733 + B2_Mm2 SINE B2 2 184 -11 6 617 185 35 69 0 chr11 4314123 4314152 -117529704 + (CATA)n Simple_repeat Simple_repeat 4 34 0 6 617 1892 174 61 37 chr11 4314207 4314582 -117529274 + ORR1C2 LTR MaLR 1 384 0 6 617 495 218 45 0 chr11 4314595 4314705 -117529151 + PB1D9 SINE Alu 4 118 -2 6 617 632 13 13 0 chr11 4314713 4314790 -117529066 + (GGGAA)n Simple_repeat Simple_repeat 3 80 0 6 617 292 178 14 14 chr11 4314795 4314869 -117528987 + GA-rich Low_complexity Low_complexity 2 75 0 6 617 490 239 28 134 chr11 4315069 4315248 -117528608 + RSINE1 SINE B4 4 163 -2 6 617 561 250 186 0 chr11 4315920 4316076 -117527780 + B3 SINE B2 2 186 -30 6 617 230 323 82 21 chr11 4316905 4317050 -117526806 + L2a LINE L2 3226 3342 -84 6 617 341 273 61 0 chr11 4317108 4317207 -117526649 - PB1D10 SINE Alu -10 107 3 6 617 641 149 104 9 chr11 4317253 4317368 -117526488 + B1_Mur4 SINE Alu 25 150 0 6 617 201 114 57 0 chr11 4317368 4317403 -117526453 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 6 617 846 160 8 3 chr11 4317548 4317695 -117526161 - B1_Mus2 SINE Alu 0 148 5 6 617 1461 186 80 37 chr11 4318306 4318657 -117525199 + ORR1D2 LTR MaLR 5 370 0 6 617 1323 77 33 0 chr11 4318859 4319040 -117524816 - B2_Mm1t SINE B2 -6 187 1 6 617 26 30 0 0 chr11 4319152 4319185 -117524671 + AT_rich Low_complexity Low_complexity 1 33 0 6 617 21 0 0 0 chr11 4319289 4319310 -117524546 + AT_rich Low_complexity Low_complexity 1 21 0 6 617 454 264 31 117 chr11 4319352 4319515 -117524341 + ID_B1 SINE B4 45 193 -31 6 617 1105 82 7 0 chr11 4320327 4320473 -117523383 - B1_Mus1 SINE Alu 0 148 2 6 617 315 0 0 0 chr11 4321001 4321036 -117522820 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 617 1210 22 0 0 chr11 4321036 4321173 -117522683 - B1_Mus1 SINE Alu -11 137 1 6 617 23 0 0 0 chr11 4321202 4321225 -117522631 + AT_rich Low_complexity Low_complexity 1 23 0 6 617 735 190 28 7 chr11 4322809 4322952 -117520904 - B1_Mur4 SINE Alu -4 146 1 6 617 205 250 0 0 chr11 4322959 4322999 -117520857 + polypyrimidine Low_complexity Low_complexity 3 42 0 6 617 978 151 0 0 chr11 4324902 4325048 -117518808 - B1_Mus1 SINE Alu -1 147 2 6 618 389 256 160 46 chr11 4325462 4325593 -117518263 - RSINE1 SINE B4 -17 148 3 6 618 1678 235 81 32 chr11 4325860 4326353 -117517503 + RMER5 LTR ERV1 10 526 -8 6 618 302 311 0 22 chr11 4327842 4327934 -117515922 - BC1_Mm scRNA scRNA -51 101 12 6 618 266 122 163 0 chr11 4328031 4328080 -117515776 - B1_Mur3 SINE Alu -87 62 6 6 618 375 286 292 15 chr11 4328527 4328576 -117515280 - B4 SINE B4 -4 288 219 6 618 822 73 0 0 chr11 4328576 4328686 -117515170 + (TCTCCC)n Simple_repeat Simple_repeat 3 112 0 6 618 375 286 292 15 chr11 4328686 4328831 -117515025 - B4 SINE B4 -74 218 41 6 618 337 264 96 43 chr11 4329145 4329260 -117514596 + MIRb SINE MIR 114 234 -34 6 618 365 241 22 33 chr11 4329331 4329421 -117514435 + B1_Mur3 SINE Alu 61 149 0 6 618 279 0 0 0 chr11 4329876 4329907 -117513949 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 618 396 281 103 58 chr11 4330183 4330308 -117513548 + RSINE1 SINE B4 4 134 -31 6 618 2477 147 27 5 chr11 4330308 4330718 -117513138 - MTC LTR MaLR -2 419 1 6 618 396 281 103 58 chr11 4330718 4330747 -117513109 + RSINE1 SINE B4 135 164 -1 6 618 1206 42 0 0 chr11 4330800 4330944 -117512912 + B1_Mus2 SINE Alu 2 145 -2 6 618 1711 198 54 3 chr11 4330994 4331167 -117512689 + ORR1D1 LTR MaLR 3 183 -191 6 618 315 49 0 0 chr11 4331167 4331208 -117512648 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 6 618 1711 198 54 3 chr11 4331208 4331388 -117512468 + ORR1D1 LTR MaLR 184 373 -1 6 618 405 70 0 0 chr11 4331689 4331746 -117512110 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 618 255 320 18 126 chr11 4331910 4332021 -117511835 + PB1D10 SINE Alu 3 101 -16 6 618 707 170 35 43 chr11 4332436 4332577 -117511279 - B1_Mus1 SINE Alu -8 140 1 6 618 266 272 10 52 chr11 4332583 4332680 -117511176 + MIRb SINE MIR 176 268 0 6 618 1896 157 40 47 chr11 4332682 4333083 -117510773 - RMER10B LTR ERVL 0 398 1 6 618 323 256 13 13 chr11 4333795 4333874 -117509982 - B1F SINE Alu -28 121 43 6 618 1506 64 16 0 chr11 4333921 4334109 -117509747 - B2_Mm2 SINE B2 -4 191 1 6 618 356 297 97 55 chr11 4334306 4334648 -117509208 + MTEb LTR MaLR 2 379 0 6 618 976 256 80 121 chr11 4335677 4335969 -117507887 + L1MB4 LINE L1 5479 5756 -424 6 618 290 250 115 9 chr11 4335969 4336082 -117507774 + PB1 SINE Alu 1 125 -2 6 618 976 256 80 121 chr11 4336082 4336399 -117507457 + L1MB4 LINE L1 5757 6063 -117 6 618 21 0 0 0 chr11 4337285 4337306 -117506550 + AT_rich Low_complexity Low_complexity 1 21 0 6 618 265 369 57 16 chr11 4337364 4337488 -117506368 + MIRb SINE MIR 17 145 -123 6 618 384 314 167 9 chr11 4337541 4337756 -117506100 + MIR SINE MIR 3 251 -11 6 618 203 360 139 35 chr11 4337880 4337988 -117505868 + L2 LINE L2 2148 2260 -1159 6 618 881 166 28 0 chr11 4337988 4338133 -117505723 - B1_Mur4 SINE Alu -1 149 1 6 618 203 360 139 35 chr11 4338133 4338419 -117505437 + L2 LINE L2 2261 2582 -837 6 618 434 316 58 0 chr11 4338527 4338666 -117505190 - B1F SINE Alu 0 149 3 6 618 1360 89 21 0 chr11 4338975 4339165 -117504691 - B2_Mm2 SINE B2 0 195 2 6 618 186 71 0 0 chr11 4339447 4339475 -117504381 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 618 874 206 74 15 chr11 4339531 4339733 -117504123 + B3 SINE B2 1 214 -2 6 618 261 160 154 47 chr11 4339861 4339967 -117503889 + PB1D9 SINE Alu 3 141 -9 6 618 399 184 237 34 chr11 4339964 4339980 -117503876 + ID_B1 SINE B4 81 222 -2 6 618 677 29 245 0 chr11 4339980 4340082 -117503774 + B1_Mm SINE Alu 19 145 -2 6 618 235 181 13 40 chr11 4340082 4340157 -117503699 + A-rich Low_complexity Low_complexity 1 73 0 6 618 241 315 71 44 chr11 4340402 4340515 -117503341 - L2c LINE L2 0 3387 3272 6 618 364 210 25 0 chr11 4340654 4340735 -117503121 - L1MA4 LINE L1 -366 5934 5852 6 618 378 0 0 0 chr11 4341621 4341663 -117502193 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 618 1631 140 96 23 chr11 4341675 4342018 -117501838 - RMER10A LTR ERVL -74 368 1 6 618 1609 174 121 19 chr11 4342262 4342626 -117501230 - MTD LTR MaLR 0 419 19 6 618 220 377 0 14 chr11 4342892 4342962 -117500894 + MIRm SINE MIR 197 265 -11 6 618 222 318 0 31 chr11 4342964 4343029 -117500827 + B4A SINE B4 87 149 -143 6 618 198 71 0 0 chr11 4343059 4343087 -117500769 + (CATA)n Simple_repeat Simple_repeat 2 29 0 6 618 3439 28 5 0 chr11 4343087 4343480 -117500376 + MTA_Mm LTR MaLR 1 395 -1 6 618 495 0 0 0 chr11 4343480 4343535 -117500321 + (CATA)n Simple_repeat Simple_repeat 4 58 0 6 618 228 315 40 14 chr11 4343552 4343626 -117500230 + ID2 SINE ID 6 81 -2 7 618 874 262 163 45 chr11 4343776 4344175 -117499681 + RMER13A LTR ERVK 21 466 -394 7 618 267 157 0 0 chr11 4344228 4344279 -117499577 + CT-rich Low_complexity Low_complexity 1 51 0 7 618 1214 71 0 0 chr11 4344453 4344607 -117499249 + B2_Mm2 SINE B2 1 154 -41 7 618 387 0 0 0 chr11 4344609 4344652 -117499204 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 618 336 231 121 0 chr11 4345857 4345948 -117497908 + ORR1E LTR MaLR 2 103 -256 7 618 450 0 0 0 chr11 4345959 4346009 -117497847 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 7 618 357 24 0 0 chr11 4346299 4346341 -117497515 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 618 992 254 30 71 chr11 4347416 4347712 -117496144 - B4 SINE B4 -8 284 1 7 618 854 275 103 15 chr11 4348151 4348413 -117495443 - B4A SINE B4 -4 288 4 7 618 500 277 23 8 chr11 4348425 4348556 -117495300 - B1F1 SINE Alu -7 142 10 7 618 448 315 0 33 chr11 4348556 4348570 -117495286 - ID_B1 SINE B4 -1 188 78 7 618 334 308 14 37 chr11 4348683 4348838 -117495018 - L1MB7 LINE L1 -32 6148 5997 7 618 249 271 169 35 chr11 4348870 4349042 -117494814 - L1MB7 LINE L1 -256 5918 5724 7 618 1106 44 0 28 chr11 4349073 4349214 -117494642 - B1_Mus2 SINE Alu -10 137 1 7 618 994 121 7 26 chr11 4349214 4349367 -117494489 - B2_Mm2 SINE B2 -37 158 9 7 618 1078 103 0 0 chr11 4349395 4349541 -117494315 + B1_Mus1 SINE Alu 3 148 0 7 618 379 193 68 34 chr11 4349554 4349672 -117494184 - L1MB7 LINE L1 -873 5273 5152 7 618 345 204 30 31 chr11 4349798 4349923 -117493933 - L1M4c LINE L1 -4886 2122 2036 7 618 555 271 7 34 chr11 4349930 4350079 -117493777 - RSINE1 SINE B4 -17 148 4 7 618 422 36 18 0 chr11 4350094 4350150 -117493706 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 618 397 327 82 50 chr11 4350166 4350385 -117493471 - L1M4c LINE L1 -4982 2026 1801 7 618 498 294 173 84 chr11 4350389 4350430 -117493426 + MTEa LTR MaLR 13 53 -326 7 618 531 263 43 14 chr11 4350430 4350569 -117493287 + B1F2 SINE Alu 1 143 -6 7 618 498 294 173 84 chr11 4350569 4350850 -117493006 + MTEa LTR MaLR 54 364 -15 7 618 366 314 154 19 chr11 4350902 4351110 -117492746 - L1M4c LINE L1 -5262 1746 1511 7 618 290 277 63 11 chr11 4351752 4351847 -117492009 - Charlie4z DNA MER1_type -7 160 61 7 618 599 272 6 4 chr11 4351845 4351980 -117491876 + ID_B1 SINE B4 81 221 -71 7 618 518 0 0 16 chr11 4351980 4352043 -117491813 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 618 321 312 62 49 chr11 4352043 4352069 -117491787 + B4A SINE B4 222 247 -45 7 618 214 106 43 0 chr11 4352076 4352123 -117491733 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 7 618 393 294 130 7 chr11 4352171 4352325 -117491531 + MER77 LTR ERVL 1 173 -434 7 618 767 259 161 8 chr11 4352401 4352662 -117491194 + MER77 LTR ERVL 306 606 -1 7 618 1439 195 30 51 chr11 4353090 4353549 -117490307 - RLTR9D LTR ERVK -12 425 1 7 618 389 229 180 33 chr11 4353826 4353948 -117489908 - B1F SINE Alu -8 141 1 7 618 248 293 37 0 chr11 4353948 4354030 -117489826 - L1MC LINE L1 -911 5235 5151 7 618 1238 285 83 26 chr11 4354045 4354657 -117489199 - L1M5 LINE L1 -1201 4945 4299 7 618 265 325 126 20 chr11 4354802 4354990 -117488866 - MIR SINE MIR -65 203 1 7 618 226 324 26 51 chr11 4355163 4355241 -117488615 - Tigger7 DNA MER2_type -5 2486 2411 7 618 455 306 16 8 chr11 4355240 4355365 -117488491 + Tigger5 DNA MER2_type 76 201 -2205 7 618 326 244 84 12 chr11 4355424 4355507 -117488349 + Tigger5 DNA MER2_type 2318 2406 0 7 618 245 223 135 21 chr11 4355507 4355599 -117488257 - Tigger7 DNA MER2_type -1433 1058 956 7 618 328 289 0 0 chr11 4355662 4355745 -117488111 + ID4 SINE ID 1 83 0 7 618 398 335 42 30 chr11 4355760 4355926 -117487930 - Tigger7 DNA MER2_type -2323 168 1 7 618 270 277 74 74 chr11 4355928 4356131 -117487725 + L1ME2 LINE L1 4960 5162 -984 7 618 324 262 25 0 chr11 4356147 4356227 -117487629 + RSINE1 SINE B4 84 165 0 7 618 710 248 10 44 chr11 4356275 4356478 -117487378 - B3A SINE B2 -2 196 1 7 618 863 259 14 45 chr11 4356519 4356741 -117487115 + B3 SINE B2 2 216 0 7 618 500 164 125 0 chr11 4356752 4356856 -117487000 + PB1D9 SINE Alu 4 120 0 7 618 294 87 0 0 chr11 4356872 4356918 -117486938 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 7 618 254 167 0 0 chr11 4356931 4356991 -117486865 + L1ME2 LINE L1 5243 5302 -844 7 618 504 261 93 10 chr11 4357003 4357208 -117486648 + L1ME2 LINE L1 5673 5894 -270 7 618 411 269 65 0 chr11 4357332 4357425 -117486431 + PB1D10 SINE Alu 13 111 -6 7 618 813 194 6 25 chr11 4357574 4357626 -117486230 - RMER1A Other Other -848 182 133 7 618 306 0 0 0 chr11 4357626 4357660 -117486196 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 618 2075 226 43 62 chr11 4357660 4358349 -117485507 - RMER1B Other Other -532 534 12 7 618 397 277 35 17 chr11 4358491 4358615 -117485241 + PB1D10 SINE Alu 15 145 -4 7 618 919 260 39 0 chr11 4358632 4358863 -117484993 - Charlie1b DNA MER1_type -240 283 44 7 618 304 258 40 30 chr11 4359488 4359588 -117484268 - B3A SINE B2 -97 101 1 7 618 1177 224 191 48 chr11 4360447 4360865 -117482991 - RMER21B LTR ERV1 -277 565 88 7 618 2191 199 118 18 chr11 4360869 4361569 -117482287 - RMER21A LTR ERV1 -64 883 2 7 618 344 153 203 27 chr11 4361580 4361654 -117482202 - RMER21B LTR ERV1 -751 91 5 7 618 399 294 115 26 chr11 4362014 4362206 -117481650 - MLT1D LTR MaLR -285 220 12 7 618 233 265 0 0 chr11 4362503 4362552 -117481304 - Tigger5 DNA MER2_type -1 2405 2357 7 618 316 289 129 24 chr11 4362619 4362743 -117481113 - Tigger5 DNA MER2_type -2260 146 10 7 618 943 206 163 37 chr11 4362819 4362996 -117480860 + RMER21B LTR ERV1 272 531 -416 7 618 195 42 0 0 chr11 4362996 4363020 -117480836 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 7 618 943 193 167 38 chr11 4363020 4363156 -117480700 + RMER21B LTR ERV1 398 566 -276 7 618 236 215 106 15 chr11 4363291 4363357 -117480499 + 4.5SRNA scRNA scRNA 15 86 -8 7 618 525 188 0 0 chr11 4363298 4363383 -117480473 + B1_Mus2 SINE Alu 31 115 -32 7 618 396 0 0 0 chr11 4363390 4363434 -117480422 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 7 618 467 272 97 0 chr11 4363517 4363631 -117480225 + PB1 SINE Alu 1 125 -2 7 618 320 179 0 0 chr11 4363647 4363703 -117480153 + ID4 SINE ID 4 59 -24 7 618 2265 119 13 40 chr11 4364095 4364472 -117479384 - ORR1B2 LTR MaLR 0 367 1 7 618 332 275 58 8 chr11 4364636 4364757 -117479099 + L1MC3 LINE L1 6962 7088 -697 7 618 402 311 8 0 chr11 4364776 4364895 -117478961 + ID_B1 SINE B4 86 205 -19 7 618 1151 79 0 0 chr11 4365513 4365652 -117478204 + B1_Mus1 SINE Alu 2 140 -8 7 618 667 242 0 32 chr11 4365730 4365884 -117477972 - B1_Mur2 SINE Alu 0 149 1 7 618 268 326 75 75 chr11 4365972 4366158 -117477698 + MLT1E3 LTR MaLR 164 349 -275 7 618 382 182 140 54 chr11 4366838 4366931 -117476925 + PB1D10 SINE Alu 27 127 0 7 618 1191 34 7 7 chr11 4367192 4367339 -117476517 - B1_Mm SINE Alu 0 147 1 7 618 973 50 0 0 chr11 4367367 4367486 -117476370 + B1_Mus1 SINE Alu 30 148 0 7 618 21 71 0 0 chr11 4367847 4367889 -117475967 + AT_rich Low_complexity Low_complexity 1 42 0 7 618 763 246 6 16 chr11 4368016 4368244 -117475612 + (TG)n Simple_repeat Simple_repeat 1 225 0 7 618 4394 132 57 10 chr11 4368244 4368965 -117474891 + RMER6A LTR ERVK 1 755 -1 7 618 763 157 5 33 chr11 4368965 4369069 -117474787 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 618 763 249 153 21 chr11 4369069 4369311 -117474545 - Lx8 LINE L1 -151 7322 7049 7 618 3252 140 98 76 chr11 4369824 4370092 -117473764 - RMER13B LTR ERVK -191 717 488 7 618 1629 47 0 0 chr11 4370092 4370285 -117473571 - B2_Mm1t SINE B2 0 193 1 7 618 3252 140 98 76 chr11 4370285 4370717 -117473139 - RMER13B LTR ERVK -421 487 1 7 618 513 0 0 0 chr11 4371552 4371609 -117472247 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 618 309 275 0 0 chr11 4372267 4372336 -117471520 - ID4_ SINE ID -12 71 3 7 618 521 276 276 0 chr11 4373175 4373472 -117470384 - MTEa LTR MaLR 0 379 1 7 618 1259 41 0 0 chr11 4373735 4373882 -117469974 + B1_Mus2 SINE Alu 1 147 0 7 618 189 0 0 0 chr11 4373882 4373903 -117469953 + (A)n Simple_repeat Simple_repeat 1 21 0 7 618 689 130 39 3 chr11 4373948 4374063 -117469793 - B3 SINE B2 -76 117 1 7 618 247 297 195 0 chr11 4374229 4374357 -117469499 + MIRb SINE MIR 30 182 -86 7 618 451 242 136 48 chr11 4374643 4374684 -117469172 + ID_B1 SINE B4 51 162 -130 7 618 591 167 172 16 chr11 4374684 4374806 -117469050 + B1F SINE Alu 5 145 -4 7 618 451 242 136 48 chr11 4374806 4374838 -117469018 + ID_B1 SINE B4 163 256 -36 7 618 2547 146 22 5 chr11 4374979 4375393 -117468463 + MTC LTR MaLR 1 421 0 7 618 241 250 79 0 chr11 4378323 4378399 -117465457 + ID4 SINE ID 2 83 0 7 618 679 293 54 16 chr11 4378458 4378642 -117465214 + B3 SINE B2 1 191 -25 7 618 1021 241 9 9 chr11 4378651 4378865 -117464991 + B3 SINE B2 1 214 -2 7 618 803 230 39 22 chr11 4378875 4379053 -117464803 - B3 SINE B2 -34 182 2 7 618 531 267 45 105 chr11 4379077 4379391 -117464465 - Lx8 LINE L1 0 7473 7179 7 618 380 301 110 14 chr11 4379448 4379593 -117464263 - RSINE1 SINE B4 -6 159 1 7 618 409 294 82 7 chr11 4380125 4380272 -117463584 + RSINE1 SINE B4 3 160 -5 7 618 369 43 0 0 chr11 4383706 4383753 -117460103 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 618 632 200 62 0 chr11 4386819 4386949 -117456907 - B1F SINE Alu -11 138 1 7 618 716 235 16 16 chr11 4388897 4389079 -117454777 - ID_B1 SINE B4 0 224 43 7 618 699 173 75 0 chr11 4393218 4393351 -117450505 - B3A SINE B2 -55 143 1 7 618 302 217 27 55 chr11 4393394 4393467 -117450389 - ID2 SINE ID -11 72 2 7 618 390 167 38 13 chr11 4393519 4393598 -117450258 - PB1D10 SINE Alu -9 108 28 7 618 199 104 0 40 chr11 4394597 4394647 -117449209 + (TGGGGG)n Simple_repeat Simple_repeat 1 48 0 7 618 405 0 0 0 chr11 4394890 4394935 -117448921 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 618 225 0 0 0 chr11 4394935 4394959 -117448897 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 618 1455 179 56 40 chr11 4395165 4395486 -117448370 + ORR1C2 LTR MaLR 1 326 -58 7 618 542 216 176 0 chr11 4395487 4395612 -117448244 + B1_Mur3 SINE Alu 1 147 -2 8 618 646 222 15 0 chr11 4395612 4395747 -117448109 + B1_Mur1 SINE Alu 13 149 0 8 618 988 53 0 0 chr11 4395751 4395884 -117447972 + B1_Mus1 SINE Alu 16 148 0 8 618 182 118 0 29 chr11 4395885 4395913 -117447943 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 8 618 986 72 13 13 chr11 4395913 4396068 -117447788 + (GGGAGA)n Simple_repeat Simple_repeat 4 158 0 8 618 182 118 0 29 chr11 4396068 4396074 -117447782 + (GAAAA)n Simple_repeat Simple_repeat 5 10 0 8 618 1082 136 23 0 chr11 4396093 4396270 -117447586 - B2_Mm2 SINE B2 0 195 15 8 618 251 150 0 0 chr11 4396272 4396312 -117447544 + ORR1C2 LTR MaLR 343 382 -2 7 618 501 200 182 6 chr11 4396493 4396674 -117447182 + Lx9 LINE L1 7306 7518 -126 8 618 281 260 56 61 chr11 4396726 4396906 -117446950 + RLTR15 LTR ERVK 45 223 -136 8 618 268 130 19 0 chr11 4397040 4397094 -117446762 + Lx9 LINE L1 7588 7642 -2 8 618 363 128 42 8 chr11 4398525 4398622 -117445234 + B2_Mm2 SINE B2 2 175 -20 8 618 279 0 0 0 chr11 4398622 4398653 -117445203 + (CATA)n Simple_repeat Simple_repeat 2 32 0 8 618 363 127 62 12 chr11 4398653 4398667 -117445189 + B2_Mm2 SINE B2 176 191 -4 8 618 542 186 69 0 chr11 4398679 4398781 -117445075 + B1_Mur2 SINE Alu 1 109 -40 8 618 24 32 0 0 chr11 4399372 4399403 -117444453 + AT_rich Low_complexity Low_complexity 1 31 0 8 618 491 310 61 42 chr11 4399844 4400157 -117443699 + L1MB8 LINE L1 5800 6118 -60 8 618 234 0 0 0 chr11 4400316 4400342 -117443514 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 618 33 25 0 0 chr11 4400347 4400387 -117443469 + AT_rich Low_complexity Low_complexity 1 40 0 8 618 342 0 0 0 chr11 4400391 4400429 -117443427 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 618 265 263 0 0 chr11 4400467 4400543 -117443313 - B3 SINE B2 -140 76 1 8 618 1382 188 60 62 chr11 4401569 4401921 -117441935 + ORR1C2 LTR MaLR 1 351 -33 8 618 347 343 18 50 chr11 4403209 4403427 -117440429 + RMER15 LTR ERVL 343 553 -22 8 618 607 257 0 63 chr11 4403666 4403824 -117440032 - B1_Mur2 SINE Alu 0 149 2 8 618 228 318 0 0 chr11 4404282 4404345 -117439511 + ID4_ SINE ID 21 83 0 8 618 1412 70 16 16 chr11 4404706 4404895 -117438961 - B2_Mm2 SINE B2 -2 193 5 8 618 1514 197 141 8 chr11 4405213 4405581 -117438275 + MTD LTR MaLR 1 417 -2 8 618 216 0 0 0 chr11 4405788 4405812 -117438044 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 618 1006 67 22 0 chr11 4405812 4405947 -117437909 - B1_Mus1 SINE Alu -10 138 1 8 618 1481 33 67 0 chr11 4406253 4406273 -117437583 - B2_Mm1a SINE B2 0 193 174 8 618 342 0 0 0 chr11 4406273 4406311 -117437545 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 8 618 1481 33 67 0 chr11 4406311 4406470 -117437386 - B2_Mm1a SINE B2 -20 173 3 8 618 994 242 13 13 chr11 4406885 4407111 -117436745 + B4A SINE B4 1 226 -66 8 618 471 35 0 0 chr11 4407173 4407230 -117436626 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 618 677 193 17 0 chr11 4407912 4408031 -117435825 + B1_Mur1 SINE Alu 19 139 -10 8 618 261 319 42 11 chr11 4408258 4408353 -117435503 - MER46C DNA MER2_type -1 337 240 8 618 749 212 35 17 chr11 4409255 4409428 -117434428 + B2_Mm2 SINE B2 7 182 -13 8 618 691 225 40 11 chr11 4409421 4409601 -117434255 - B3 SINE B2 -2 193 1 8 618 268 301 29 0 chr11 4409737 4409840 -117434016 - PB1D10 SINE Alu -7 110 5 8 618 404 290 136 14 chr11 4409912 4410052 -117433804 - RSINE1 SINE B4 -6 159 3 8 618 24 77 0 0 chr11 4410052 4410104 -117433752 + AT_rich Low_complexity Low_complexity 1 52 0 8 618 1880 205 37 179 chr11 4410162 4410864 -117432992 + RMER19C LTR ERVK 3 604 -7 8 618 746 234 7 0 chr11 4410891 4411045 -117432811 - B3 SINE B2 -61 155 1 8 618 1241 103 32 5 chr11 4411164 4411182 -117432674 - B2_Mm1a SINE B2 -1 192 170 8 618 189 0 0 0 chr11 4411182 4411203 -117432653 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 8 618 1241 103 32 5 chr11 4411203 4411369 -117432487 - B2_Mm1a SINE B2 -24 169 3 8 618 639 203 33 98 chr11 4412102 4412255 -117431601 + B1_Mur2 SINE Alu 1 143 -6 8 618 198 0 0 0 chr11 4412258 4412280 -117431576 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 618 314 256 236 11 chr11 4412352 4412530 -117431326 + B4A SINE B4 3 220 -72 8 618 1170 296 96 85 chr11 4412599 4414042 -117429814 + L1M2 LINE L1 1550 2979 -3164 8 618 516 311 106 0 chr11 4414120 4414252 -117429604 - RSINE1 SINE B4 -17 148 3 8 618 400 277 77 65 chr11 4414290 4414460 -117429396 + B4A SINE B4 3 174 -118 8 618 256 187 64 39 chr11 4414538 4414616 -117429240 + L1M2 LINE L1 5719 5798 -499 8 618 658 259 7 7 chr11 4414669 4414813 -117429043 - RSINE1 SINE B4 -17 148 5 8 618 384 197 26 0 chr11 4414944 4415020 -117428836 + B3 SINE B2 132 209 -7 8 618 396 59 0 0 chr11 4415041 4415092 -117428764 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 618 881 208 5 15 chr11 4415092 4415287 -117428569 + ORR1C2 LTR MaLR 192 384 0 8 618 402 245 59 0 chr11 4415293 4415395 -117428461 + MTEa LTR MaLR 265 372 -7 8 618 270 364 42 21 chr11 4416152 4416343 -117427513 - MIRc SINE MIR -60 208 14 8 618 1113 101 0 0 chr11 4416551 4416699 -117427157 + B1_Mus1 SINE Alu 1 148 0 8 618 861 171 7 27 chr11 4416729 4416879 -117426977 - B1_Mur1 SINE Alu -1 148 2 8 618 761 306 95 4 chr11 4416916 4417169 -117426687 + B4A SINE B4 1 276 -16 8 618 423 38 0 0 chr11 4417179 4417232 -117426624 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 618 1161 75 7 0 chr11 4418265 4418412 -117425444 - B1_Mus1 SINE Alu 0 148 1 8 618 1625 37 0 5 chr11 4418441 4418633 -117425223 + B2_Mm1a SINE B2 2 192 -1 8 618 332 323 0 0 chr11 4419005 4419104 -117424752 + B1F SINE Alu 7 105 -44 8 618 1202 41 0 27 chr11 4419284 4419434 -117424422 + B1_Mm SINE Alu 1 146 -1 8 618 406 219 52 17 chr11 4419487 4419603 -117424253 + L1MC4 LINE L1 7168 7287 -755 8 618 438 20 0 0 chr11 4419701 4419752 -117424104 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 618 1289 245 94 70 chr11 4419975 4420476 -117423380 + RLTR20D LTR ERVK 1 513 -55 8 618 261 226 0 0 chr11 4420491 4420575 -117423281 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 618 847 136 19 52 chr11 4421760 4421915 -117421941 - B1_Mur4 SINE Alu 0 150 1 8 618 405 71 43 0 chr11 4421924 4421994 -117421862 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 8 618 706 265 32 5 chr11 4421998 4422188 -117421668 - ID_B1 SINE B4 -21 203 9 8 618 237 167 0 0 chr11 4422893 4422929 -117420927 + RSINE1 SINE B4 30 65 -100 8 618 431 299 31 85 chr11 4423132 4423337 -117420519 - B3A SINE B2 0 216 13 8 618 231 167 0 0 chr11 4423372 4423414 -117420442 + GA-rich Low_complexity Low_complexity 2 43 0 8 618 570 204 239 0 chr11 4423461 4423628 -117420228 - B3 SINE B2 0 216 10 8 618 436 288 63 28 chr11 4423997 4424140 -117419716 - RSINE1 SINE B4 -6 159 12 8 618 647 159 75 62 chr11 4424148 4424309 -117419547 - B2_Mm2 SINE B2 -12 183 21 8 618 1141 84 43 48 chr11 4425499 4425686 -117418170 + B2_Mm2 SINE B2 1 186 -9 8 618 246 382 0 0 chr11 4425901 4425990 -117417866 - L2c LINE L2 -224 3163 3075 8 618 669 216 92 12 chr11 4426449 4426613 -117417243 + MTD LTR MaLR 1 177 -242 8 618 280 211 29 143 chr11 4426616 4426682 -117417174 + MTD LTR MaLR 287 343 -76 8 618 750 187 29 0 chr11 4426682 4426821 -117417035 - B1_Mus2 SINE Alu -2 145 3 8 618 280 211 29 143 chr11 4426821 4426859 -117416997 + MTD LTR MaLR 344 379 -40 8 618 1223 41 0 0 chr11 4428869 4429016 -117414840 + B1_Mm SINE Alu 1 147 0 8 618 784 166 16 52 chr11 4429131 4429352 -117414504 + ORR1C2 LTR MaLR 105 384 0 8 618 597 164 190 0 chr11 4429644 4429760 -117414096 + B1_Mur4 SINE Alu 1 138 -12 8 618 225 0 0 0 chr11 4429785 4429810 -117414046 + (A)n Simple_repeat Simple_repeat 1 25 0 8 618 299 93 380 9 chr11 4430039 4430147 -117413709 - B2_Mm2 SINE B2 -1 194 47 8 618 1172 142 11 0 chr11 4430160 4430336 -117413520 - B2_Mm1t SINE B2 -14 179 2 8 618 345 100 0 0 chr11 4430402 4430452 -117413404 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 618 237 245 0 19 chr11 4430912 4430966 -117412890 - tRNA-Ala-GCA tRNA tRNA -21 54 2 8 618 672 267 61 22 chr11 4432580 4432810 -117411046 + B4 SINE B4 1 239 -53 8 618 333 222 81 49 chr11 4432933 4433056 -117410800 + L1MB7 LINE L1 5566 5692 -492 8 618 488 309 22 22 chr11 4433190 4433329 -117410527 + B1_Mur3 SINE Alu 2 140 -9 8 618 984 245 138 20 chr11 4433344 4433785 -117410071 + L1MB7 LINE L1 5680 6172 -12 8 618 283 262 139 80 chr11 4434108 4434295 -117409561 + B3A SINE B2 1 198 0 8 618 1015 213 69 5 chr11 4434299 4434502 -117409354 + B3 SINE B2 1 216 0 8 618 35 0 0 0 chr11 4434605 4434640 -117409216 + AT_rich Low_complexity Low_complexity 1 35 0 8 618 2977 74 3 9 chr11 4434829 4435266 -117408590 + LTRIS_Mus LTR ERV1 167 595 -59 8 618 237 33 0 0 chr11 4435327 4435357 -117408499 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8 618 1098 65 0 35 chr11 4435370 4435514 -117408342 - B1_Mus2 SINE Alu -7 140 2 8 618 423 268 199 46 chr11 4435862 4436273 -117407583 + L1MB8 LINE L1 5525 5998 -180 8 618 302 304 78 0 chr11 4436800 4436902 -117406954 - PB1D10 SINE Alu -6 111 2 8 618 662 304 23 5 chr11 4437068 4437283 -117406573 + ID_B1 SINE B4 6 224 0 8 618 418 265 68 10 chr11 4437378 4437481 -117406375 - PB1D10 SINE Alu -8 109 1 9 618 909 263 0 0 chr11 4437555 4437745 -117406111 - B3 SINE B2 -7 209 20 9 618 341 266 119 16 chr11 4437756 4437882 -117405974 - B1F SINE Alu 0 149 11 9 618 1918 261 118 17 chr11 4438813 4439526 -117404330 + Lx8 LINE L1 6288 7072 -401 9 618 354 210 25 0 chr11 4439798 4439879 -117403977 - B4A SINE B4 -207 85 3 9 618 291 297 176 11 chr11 4439974 4440161 -117403695 + Lx8 LINE L1 7160 7377 -96 9 618 536 143 101 37 chr11 4440319 4440428 -117403428 + PB1D9 SINE Alu 5 120 0 9 618 522 213 220 0 chr11 4440434 4440584 -117403272 + ID_B1 SINE B4 4 186 -38 9 618 606 260 78 26 chr11 4440749 4440903 -117402953 + B3A SINE B2 4 165 -33 9 618 180 0 0 0 chr11 4440918 4440938 -117402918 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 618 880 259 16 33 chr11 4441523 4441766 -117402090 + B4A SINE B4 53 291 -1 9 618 21 0 0 0 chr11 4442023 4442044 -117401812 + AT_rich Low_complexity Low_complexity 1 21 0 9 618 211 295 24 89 chr11 4442344 4442467 -117401389 + ID_B1 SINE B4 3 117 -107 9 618 552 247 6 72 chr11 4442532 4442698 -117401158 + ID_B1 SINE B4 66 220 -4 9 618 195 222 0 0 chr11 4442732 4442777 -117401079 + GA-rich Low_complexity Low_complexity 2 46 0 9 618 521 208 9 0 chr11 4444136 4444242 -117399614 + B1_Mm SINE Alu 41 147 0 9 618 21 36 0 0 chr11 4444310 4444338 -117399518 + AT_rich Low_complexity Low_complexity 1 28 0 9 618 311 141 12 165 chr11 4444548 4444633 -117399223 + B2_Mm2 SINE B2 2 73 -122 9 618 557 65 226 0 chr11 4444586 4444679 -117399177 + B1_Mm SINE Alu 34 147 0 9 618 351 0 0 0 chr11 4444679 4444718 -117399138 + (A)n Simple_repeat Simple_repeat 1 39 0 9 618 499 66 0 0 chr11 4444721 4444782 -117399074 + B2_Mm2 SINE B2 27 87 -108 9 618 1321 76 60 0 chr11 4444974 4445158 -117398698 + B2_Mm2 SINE B2 1 195 0 9 618 277 298 143 0 chr11 4445198 4445369 -117398487 + B4A SINE B4 48 285 -7 9 618 263 248 96 42 chr11 4445494 4445650 -117398206 + B3 SINE B2 1 165 -33 9 618 871 246 14 28 chr11 4445682 4445895 -117397961 - B3 SINE B2 -6 210 1 9 618 262 306 0 14 chr11 4447101 4447174 -117396682 + ID4_ SINE ID 9 80 -3 9 618 22 0 0 0 chr11 4447227 4447249 -117396607 + AT_rich Low_complexity Low_complexity 1 22 0 9 618 708 181 80 0 chr11 4447254 4447392 -117396464 + B1_Mur4 SINE Alu 1 149 -1 9 618 707 265 59 0 chr11 4447451 4447655 -117396201 + B3 SINE B2 1 216 0 9 618 1068 65 7 0 chr11 4448261 4448400 -117395456 - B1_Mus1 SINE Alu 0 148 9 9 618 219 167 0 0 chr11 4448826 4448868 -117394988 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 618 229 222 111 0 chr11 4449260 4449314 -117394542 + MT2B LTR ERVL 162 221 -380 9 618 301 274 181 53 chr11 4449395 4449638 -117394218 + B4 SINE B4 1 274 -18 9 618 185 240 115 39 chr11 4450070 4450148 -117393708 + L4 LINE RTE 148 231 -1798 9 618 811 233 57 0 chr11 4450188 4450364 -117393492 - B3 SINE B2 -11 205 20 9 618 569 196 101 36 chr11 4450800 4450938 -117392918 - B1_Mus2 SINE Alu 0 147 1 9 618 701 224 39 71 chr11 4451064 4451347 -117392509 + L1M5 LINE L1 5546 5819 -360 9 618 244 338 14 0 chr11 4451347 4451421 -117392435 + B4 SINE B4 1 75 -217 9 618 180 97 0 0 chr11 4451469 4451500 -117392356 + (A)n Simple_repeat Simple_repeat 1 31 0 9 618 350 188 16 0 chr11 4451584 4451648 -117392208 - B4 SINE B4 -225 67 3 9 618 1320 91 11 0 chr11 4451885 4452071 -117391785 - B2_Mm1t SINE B2 -4 189 2 9 618 27 49 0 0 chr11 4452155 4452196 -117391660 + AT_rich Low_complexity Low_complexity 1 41 0 9 618 341 303 172 0 chr11 4452249 4452348 -117391508 + MER45B DNA Tip100 1 116 -924 9 618 774 163 48 28 chr11 4452765 4452910 -117390946 + B1_Mus1 SINE Alu 1 148 0 9 618 1184 183 60 23 chr11 4452924 4453142 -117390714 + URR1A DNA MER1_type 1 226 0 9 618 1944 196 164 17 chr11 4453916 4454497 -117389359 - RCHARR1 DNA MER1_type 0 974 309 9 618 309 288 178 22 chr11 4454590 4454620 -117389236 + B4 SINE B4 70 220 -67 9 618 451 252 0 10 chr11 4454620 4454720 -117389136 + PB1D9 SINE Alu 15 113 -7 9 618 229 226 55 77 chr11 4454752 4454843 -117389013 + L1MC4 LINE L1 7816 7904 -138 9 618 240 35 0 0 chr11 4455245 4455274 -117388582 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 618 1129 54 0 33 chr11 4455441 4455594 -117388262 + B1_Mus1 SINE Alu 1 148 0 9 618 890 179 177 64 chr11 4455612 4455774 -117388082 - URR1A DNA MER1_type 0 226 41 9 618 1690 99 188 11 chr11 4455774 4456050 -117387806 + ORR1A2 LTR MaLR 3 327 0 9 618 890 180 23 64 chr11 4456050 4456090 -117387766 - URR1A DNA MER1_type -186 40 1 9 618 472 180 39 29 chr11 4456090 4456184 -117387672 + PB1D10 SINE Alu 23 117 0 9 618 216 0 0 0 chr11 4456291 4456315 -117387541 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 9 618 23 33 0 0 chr11 4456391 4456421 -117387435 + AT_rich Low_complexity Low_complexity 1 30 0 9 619 565 220 40 17 chr11 4456471 4456647 -117387209 + L1MA8 LINE L1 5760 5939 -352 9 619 315 206 73 0 chr11 4456647 4456715 -117387141 + B1F SINE Alu 74 146 -3 9 619 311 284 12 0 chr11 4456743 4456824 -117387032 + B4 SINE B4 1 82 -210 9 619 360 0 0 0 chr11 4456884 4456924 -117386932 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 619 819 158 0 0 chr11 4456926 4457059 -117386797 + B1_Mur3 SINE Alu 17 149 0 9 619 519 265 130 86 chr11 4457059 4457339 -117386517 + B4 SINE B4 27 290 -2 9 619 405 221 102 7 chr11 4457464 4457601 -117386255 + L1MB7 LINE L1 6030 6179 -5 9 619 1040 320 14 3 chr11 4457633 4457918 -117385938 - B4A SINE B4 -4 288 1 9 619 306 0 0 0 chr11 4457977 4458011 -117385845 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 619 649 223 29 7 chr11 4458039 4458179 -117385677 + B1_Mur2 SINE Alu 1 143 -6 9 619 250 347 49 41 chr11 4458530 4458653 -117385203 + B4 SINE B4 79 202 -90 9 619 516 250 40 16 chr11 4458545 4458671 -117385185 + B1F SINE Alu 7 135 -14 9 619 412 286 64 7 chr11 4458990 4459131 -117384725 + B1F2 SINE Alu 1 149 0 9 619 390 103 12 25 chr11 4459139 4459219 -117384637 + Lx4A LINE L1 6980 7058 0 9 619 591 307 92 57 chr11 4459331 4459539 -117384317 + Tigger7 DNA MER2_type 15 224 -2267 9 619 330 67 0 0 chr11 4459539 4459584 -117384272 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 619 591 307 92 57 chr11 4459584 4459658 -117384198 + Tigger7 DNA MER2_type 225 307 -2184 9 619 442 170 319 0 chr11 4459662 4459803 -117384053 + Tigger7 DNA MER2_type 2135 2320 -171 9 619 902 46 83 23 chr11 4459823 4459956 -117383900 + B1_Mur4 SINE Alu 10 150 0 9 619 1280 65 0 5 chr11 4460018 4460242 -117383614 + (CA)n Simple_repeat Simple_repeat 1 222 0 9 619 543 112 0 0 chr11 4460280 4460369 -117383487 + (CA)n Simple_repeat Simple_repeat 2 90 0 9 619 270 81 0 0 chr11 4460409 4460446 -117383410 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 619 549 88 0 0 chr11 4460484 4460564 -117383292 + (CA)n Simple_repeat Simple_repeat 2 81 0 9 619 285 75 0 0 chr11 4460603 4460643 -117383213 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 619 320 125 45 45 chr11 4460649 4460716 -117383140 + HAL1-3A_ME LINE L1 1976 2042 -816 9 619 521 321 93 53 chr11 4460768 4461241 -117382615 + L1MB4 LINE L1 4839 5330 -810 9 619 245 248 57 9 chr11 4461464 4461570 -117382286 + L1MB4 LINE L1 5332 5442 -738 9 619 617 313 9 24 chr11 4461580 4461755 -117382101 - ID_B1 SINE B4 -46 246 82 9 619 1035 113 90 0 chr11 4461770 4461947 -117381909 - B2_Mm2 SINE B2 -2 193 1 9 619 924 269 100 40 chr11 4462024 4462473 -117381383 + L1MB4 LINE L1 5556 6031 -149 9 619 425 56 0 0 chr11 4462540 4462594 -117381262 + L1Md_F2 LINE L1 5532 5585 -298 9 619 7627 59 14 2 chr11 4462595 4463566 -117380290 + L1Md_F2 LINE L1 5587 6569 -13 9 619 846 159 0 0 chr11 4465158 4465290 -117378566 - B1_Mus2 SINE Alu -3 144 13 9 619 383 241 60 81 chr11 4465161 4465310 -117378546 - B4A SINE B4 -71 221 76 9 619 633 261 80 67 chr11 4465485 4465790 -117378066 - RLTR12B LTR ERVK -253 315 2 9 619 363 290 9 0 chr11 4465810 4465917 -117377939 + PB1D10 SINE Alu 3 110 -7 9 619 394 285 64 21 chr11 4465959 4466099 -117377757 + RSINE1 SINE B4 16 161 -4 9 619 21 57 0 0 chr11 4466099 4466134 -117377722 + AT_rich Low_complexity Low_complexity 1 35 0 9 619 180 111 0 0 chr11 4466166 4466193 -117377663 + (A)n Simple_repeat Simple_repeat 1 27 0 9 619 368 69 0 33 chr11 4466343 4466403 -117377453 - B1_Mur4 SINE Alu 0 150 93 9 619 319 270 221 8 chr11 4466473 4466600 -117377256 - RSINE1 SINE B4 -9 156 3 9 619 192 77 0 0 chr11 4466601 4466627 -117377229 + (T)n Simple_repeat Simple_repeat 1 26 0 9 619 1045 48 6 115 chr11 4466627 4466792 -117377064 - B1_Mus1 SINE Alu 0 148 2 9 619 427 271 81 36 chr11 4466880 4466991 -117376865 - RSINE1 SINE B4 -6 159 44 9 619 737 137 0 33 chr11 4467000 4467121 -117376735 + B1_Mur1 SINE Alu 27 143 -6 9 619 286 218 0 18 chr11 4467146 4467202 -117376654 - RSINE1 SINE B4 -105 60 6 9 619 851 181 0 20 chr11 4467343 4467495 -117376361 + B1_Mur3 SINE Alu 1 149 0 9 619 1171 65 5 101 chr11 4467526 4467566 -117376290 + B2_Mm1t SINE B2 1 37 -156 9 619 1007 50 221 25 chr11 4467566 4467729 -117376127 + B2_Mm2 SINE B2 1 195 0 9 619 1171 65 5 101 chr11 4467729 4467877 -117375979 + B2_Mm1t SINE B2 38 171 -22 9 619 762 43 0 0 chr11 4467884 4467978 -117375878 + (GGAGA)n Simple_repeat Simple_repeat 2 95 0 9 619 240 256 64 0 chr11 4468073 4468151 -117375705 + BC1_Mm scRNA scRNA 1 83 -69 9 619 23 0 0 0 chr11 4468407 4468430 -117375426 + AT_rich Low_complexity Low_complexity 1 23 0 9 619 1219 109 16 11 chr11 4468764 4468949 -117374907 + B2_Mm2 SINE B2 2 187 -8 9 619 836 196 105 5 chr11 4468989 4469179 -117374677 + B3 SINE B2 1 209 -7 9 619 271 176 0 38 chr11 4469316 4469369 -117374487 + PB1 SINE Alu 57 107 -20 9 619 463 345 54 15 chr11 4469718 4469921 -117373935 + ID_B1 SINE B4 1 211 -13 9 619 210 300 20 20 chr11 4469964 4470015 -117373841 + PB1D9 SINE Alu 1 51 -69 9 619 202 0 91 0 chr11 4470366 4470399 -117373457 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 619 1184 227 81 56 chr11 4470408 4470762 -117373094 - MTD LTR MaLR -1 418 2 1 619 224 319 43 32 chr11 4470925 4471019 -117372837 - B1F1 SINE Alu -54 95 1 1 619 262 358 27 18 chr11 4471869 4471980 -117371876 + MER87 LTR ERV1 408 519 -22 1 619 741 249 90 20 chr11 4472267 4472468 -117371388 - B3 SINE B2 0 216 2 1 619 872 213 47 37 chr11 4472475 4472690 -117371166 - RMER1C Other Other -9 1333 1117 1 619 492 309 121 12 chr11 4474069 4474413 -117369443 - RMER1C Other Other -504 838 467 1 619 225 198 62 10 chr11 4475189 4475286 -117368570 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 619 846 219 98 0 chr11 4475516 4475699 -117368157 - B3 SINE B2 -15 201 1 1 619 2544 46 65 0 chr11 4476442 4476767 -117367089 + ORR1A1 LTR MaLR 1 346 0 1 619 301 294 109 9 chr11 4476875 4476985 -117366871 - MIR SINE MIR -37 225 105 1 619 925 221 44 10 chr11 4477199 4477405 -117366451 - B3 SINE B2 0 216 4 1 619 1606 32 5 0 chr11 4477410 4477598 -117366258 - B2_Mm1a SINE B2 -3 190 2 1 619 462 91 0 0 chr11 4477792 4477869 -117365987 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 1 619 3500 84 61 8 chr11 4479111 4479547 -117364309 + L1Md_F2 LINE L1 6038 6479 -103 1 619 189 74 0 0 chr11 4479547 4479574 -117364282 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 1 619 3500 84 61 8 chr11 4479574 4479642 -117364214 + L1Md_F2 LINE L1 6480 6567 -15 1 619 485 0 0 32 chr11 4479895 4479957 -117363899 + (GAAA)n Simple_repeat Simple_repeat 4 63 0 1 619 1115 76 18 159 chr11 4479990 4480210 -117363646 + B2_Mm1a SINE B2 2 190 -3 1 619 527 88 125 0 chr11 4480243 4480323 -117363533 + B1_Mm SINE Alu 58 147 0 1 619 605 151 67 2 chr11 4480325 4480434 -117363422 + B1_Mus2 SINE Alu 33 141 -6 1 619 590 296 7 14 chr11 4480445 4480589 -117363267 + B1_Mur3 SINE Alu 7 149 0 1 619 21 0 0 0 chr11 4480691 4480712 -117363144 + AT_rich Low_complexity Low_complexity 1 21 0 1 619 183 114 0 0 chr11 4480857 4480892 -117362964 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 619 226 214 79 79 chr11 4481281 4481357 -117362499 - MIRc SINE MIR -110 166 88 1 619 392 311 32 32 chr11 4481517 4481640 -117362216 + RSINE1 SINE B4 2 124 -41 1 619 523 252 79 33 chr11 4481705 4481857 -117361999 - B3 SINE B2 -13 203 45 1 619 1000 128 7 33 chr11 4482139 4482292 -117361564 + B1_Mur4 SINE Alu 1 149 -1 1 619 1100 85 43 49 chr11 4482297 4482482 -117361374 + B2_Mm2 SINE B2 2 185 -10 1 619 422 0 0 48 chr11 4482484 4482547 -117361309 + L1Md_T LINE L1 6523 6582 0 1 619 707 268 141 23 chr11 4482596 4482852 -117361004 - B4A SINE B4 -4 288 3 1 619 298 249 126 12 chr11 4482917 4483084 -117360772 + L1ME2z LINE L1 5702 5887 -557 1 619 384 253 37 21 chr11 4483090 4483196 -117360660 + B1_Mur2 SINE Alu 27 138 -11 1 619 1307 78 45 0 chr11 4483390 4483569 -117360287 + B2_Mm2 SINE B2 1 187 -8 1 619 920 241 34 5 chr11 4483750 4483954 -117359902 + B3 SINE B2 1 210 -6 1 619 676 264 0 0 chr11 4484000 4484125 -117359731 - RSINE1 SINE B4 -39 126 2 1 619 616 299 35 7 chr11 4484149 4484294 -117359562 - RSINE1 SINE B4 -12 153 5 1 619 380 297 59 39 chr11 4484258 4484461 -117359395 - CYRA11_Mm Unknown Y-chromosome -239 378 172 1 619 849 94 58 0 chr11 4484324 4484462 -117359394 + URR1A DNA MER1_type 81 226 0 1 619 448 143 0 0 chr11 4484581 4484644 -117359212 + B1_Mur4 SINE Alu 7 69 -81 1 619 247 282 0 82 chr11 4484586 4484671 -117359185 + MT2B LTR ERVL 175 252 -349 1 619 333 316 49 25 chr11 4485312 4485474 -117358382 - L1ME4a LINE L1 0 6124 5959 1 619 1198 28 14 0 chr11 4485671 4485815 -117358041 + B1_Mm SINE Alu 1 146 -1 1 619 322 301 169 8 chr11 4485999 4486123 -117357733 + RSINE1 SINE B4 3 146 -19 1 619 396 270 108 23 chr11 4486215 4486344 -117357512 + B1F SINE Alu 2 141 -8 1 619 778 187 29 7 chr11 4486533 4486673 -117357183 - B1_Mur4 SINE Alu -6 144 2 1 619 953 88 169 0 chr11 4486979 4487139 -117356717 + B2_Mm2 SINE B2 2 188 -7 1 619 507 258 76 23 chr11 4487204 4487335 -117356521 + ID_B1 SINE B4 85 222 -2 1 619 337 227 67 0 chr11 4487345 4487420 -117356436 + ID4_ SINE ID 3 82 -1 1 619 492 173 37 37 chr11 4487795 4487903 -117355953 + B1_Mur1 SINE Alu 42 149 0 1 619 1562 32 11 5 chr11 4487933 4488124 -117355732 + B2_Mm1a SINE B2 2 193 0 1 619 509 289 47 0 chr11 4489042 4489170 -117354686 - ID_B1 SINE B4 -7 217 84 1 619 375 23 0 0 chr11 4489388 4489432 -117354424 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 619 448 333 26 0 chr11 4489574 4489727 -117354129 + RSINE1 SINE B4 5 161 -4 1 619 1135 88 0 0 chr11 4489755 4489903 -117353953 + B1_Mus1 SINE Alu 1 148 0 1 619 198 103 0 0 chr11 4489910 4489939 -117353917 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 619 467 307 24 15 chr11 4489962 4490122 -117353734 + B4 SINE B4 8 169 -55 1 619 276 30 0 0 chr11 4490220 4490253 -117353603 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1 619 245 320 19 93 chr11 4490253 4490360 -117353496 - MT2B LTR ERVL -327 274 176 1 619 393 191 132 22 chr11 4490275 4490366 -117353490 - B1_Mus2 SINE Alu -44 103 3 1 619 708 212 25 62 chr11 4490534 4490695 -117353161 + B3A SINE B2 44 198 0 1 619 957 117 15 0 chr11 4491058 4491195 -117352661 - B1_Mur4 SINE Alu -11 139 1 1 619 558 282 84 0 chr11 4491684 4491826 -117352030 + RSINE1 SINE B4 11 164 -1 1 619 315 71 0 0 chr11 4492189 4492231 -117351625 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 619 609 225 46 8 chr11 4492235 4492365 -117351491 - RSINE1 SINE B4 -29 136 2 1 619 301 224 61 133 chr11 4492374 4492472 -117351384 - B1F2 SINE Alu -7 142 52 1 619 23 33 0 0 chr11 4492496 4492526 -117351330 + AT_rich Low_complexity Low_complexity 1 30 0 1 619 267 31 0 0 chr11 4494725 4494757 -117349099 + (CCG)n Simple_repeat Simple_repeat 2 33 0 1 619 725 158 112 0 chr11 4495397 4495549 -117348307 + URR1A DNA MER1_type 58 226 0 1 619 296 327 84 42 chr11 4495549 4495614 -117348242 - CYRA11_Mm Unknown Y-chromosome -434 183 110 1 619 205 362 37 24 chr11 4495712 4495794 -117348062 + L2b LINE L2 3238 3320 -55 1 619 221 304 188 0 chr11 4496080 4496192 -117347664 + L4 LINE RTE 1725 1857 -172 1 619 711 333 41 0 chr11 4497279 4497549 -117346307 + Charlie1a DNA MER1_type 1 281 -1174 1 619 1173 48 7 0 chr11 4497555 4497700 -117346156 + B1_Mm SINE Alu 2 147 0 1 619 208 139 0 0 chr11 4497700 4497736 -117346120 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 619 431 316 106 9 chr11 4498248 4498475 -117345381 + Charlie1a DNA MER1_type 474 722 -733 1 619 502 244 101 0 chr11 4498469 4498588 -117345268 + B1_Mur3 SINE Alu 11 141 -8 1 619 561 274 118 0 chr11 4498580 4498792 -117345064 + Charlie1a DNA MER1_type 689 925 -530 1 619 213 94 36 54 chr11 4499140 4499156 -117344700 + (TAAA)n Simple_repeat Simple_repeat 3 19 0 1 619 1210 40 0 20 chr11 4499156 4499307 -117344549 + B1_Mus1 SINE Alu 1 148 0 1 619 213 94 36 54 chr11 4499307 4499346 -117344510 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 619 499 267 88 44 chr11 4499389 4499421 -117344435 + L1M2 LINE L1 5051 5081 -1059 1 619 770 193 13 27 chr11 4499421 4499570 -117344286 - B1_Mur2 SINE Alu -1 148 2 1 619 552 248 72 6 chr11 4499570 4499831 -117344025 + L1M2 LINE L1 5082 5360 -783 1 619 842 211 0 13 chr11 4499832 4499981 -117343875 + B1_Mur1 SINE Alu 2 148 -1 1 619 336 178 0 40 chr11 4500000 4500076 -117343780 + L1MA8 LINE L1 5360 5432 -868 1 619 926 237 118 4 chr11 4500091 4500328 -117343528 + B4A SINE B4 7 270 -22 2 619 416 104 15 0 chr11 4500328 4500395 -117343461 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 619 214 301 25 99 chr11 4500406 4500487 -117343369 + ID4_ SINE ID 2 76 -7 4 619 1128 89 0 0 chr11 4500529 4500675 -117343181 + B1_Mus2 SINE Alu 2 147 0 5 619 387 60 0 0 chr11 4500675 4500725 -117343131 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 6 619 493 255 59 0 chr11 4500728 4500881 -117342975 + L1MA8 LINE L1 5451 5612 -700 1 619 937 228 23 37 chr11 4500885 4501099 -117342757 + ID_B1 SINE B4 12 222 -2 7 619 1427 262 72 46 chr11 4501116 4501765 -117342091 + L1MA8 LINE L1 5624 6289 -2 1 619 549 211 57 8 chr11 4501793 4501917 -117341939 + ID_B1 SINE B4 90 219 -5 8 619 259 340 44 19 chr11 4501804 4501963 -117341893 - YREP_Mm Unknown Unknown -1519 293 131 9 619 256 299 45 0 chr11 4501967 4502034 -117341822 + ID_B1 SINE B4 81 150 -74 1 619 315 0 0 0 chr11 4502050 4502085 -117341771 + (A)n Simple_repeat Simple_repeat 1 35 0 1 619 186 234 0 78 chr11 4502461 4502512 -117341344 + MIR SINE MIR 107 153 -55 1 619 251 341 91 18 chr11 4502592 4502734 -117341122 - MIRm SINE MIR -3 205 66 1 619 900 152 7 0 chr11 4503435 4503580 -117340276 + B1_Mur4 SINE Alu 5 150 0 1 619 696 24 0 0 chr11 4503612 4503694 -117340162 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 1 619 186 169 197 15 chr11 4503720 4503786 -117340070 - MIR SINE MIR -89 119 42 1 619 216 319 57 83 chr11 4504245 4504402 -117339454 - MIR3 SINE MIR -97 171 17 1 619 252 122 0 0 chr11 4504455 4504496 -117339360 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 1 619 852 266 127 11 chr11 4505282 4505501 -117338355 - ID_B1 SINE B4 -46 246 6 1 619 183 333 28 0 chr11 4505756 4505828 -117338028 - L2a LINE L2 -67 3359 3286 2 619 410 174 15 154 chr11 4505960 4506016 -117337840 + PB1D10 SINE Alu 1 50 -67 2 619 964 119 0 53 chr11 4506016 4506160 -117337696 + B1_Mur4 SINE Alu 2 138 -12 2 619 948 18 0 0 chr11 4506160 4506270 -117337586 + (GGGAGA)n Simple_repeat Simple_repeat 6 115 0 2 619 410 174 15 154 chr11 4506276 4506355 -117337501 + PB1D10 SINE Alu 51 117 0 2 619 542 211 18 10 chr11 4507080 4507201 -117336655 + B1_Mur2 SINE Alu 6 132 -17 2 619 497 248 43 14 chr11 4507280 4507419 -117336437 + B1F SINE Alu 1 143 -6 2 619 723 195 15 15 chr11 4507636 4507766 -117336090 - B1_Mur1 SINE Alu -19 130 1 2 619 405 306 25 111 chr11 4507804 4508039 -117335817 - MER58C DNA MER1_type 0 215 1 2 619 389 19 38 0 chr11 4508254 4508307 -117335549 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2 619 1152 72 0 0 chr11 4508307 4508446 -117335410 - B1_Mm SINE Alu -8 139 1 2 619 414 0 0 0 chr11 4508656 4508702 -117335154 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 619 948 201 16 26 chr11 4508831 4509025 -117334831 + B3 SINE B2 24 215 -1 3 619 209 303 49 62 chr11 4509154 4509235 -117334621 - MIRc SINE MIR -156 112 33 3 619 218 32 32 0 chr11 4509285 4509316 -117334540 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 619 1233 254 147 7 chr11 4509505 4509926 -117333930 + L1MD2 LINE L1 4821 5300 -846 3 619 533 268 54 0 chr11 4509944 4510056 -117333800 + B1F SINE Alu 32 149 0 3 619 1302 275 94 11 chr11 4510063 4510597 -117333259 + L1MD2 LINE L1 5307 5884 -475 3 619 502 281 9 0 chr11 4510606 4510720 -117333136 + RSINE1 SINE B4 4 118 -47 3 619 504 0 0 0 chr11 4510735 4510791 -117333065 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 619 407 276 99 30 chr11 4510831 4510962 -117332894 + MTEa LTR MaLR 240 379 0 3 619 709 229 139 79 chr11 4510962 4511242 -117332614 + L1MD2 LINE L1 5907 6203 -156 3 619 1036 97 7 7 chr11 4511298 4511444 -117332412 - B1_Mus1 SINE Alu 0 148 3 3 619 198 103 0 0 chr11 4511461 4511490 -117332366 + (TCC)n Simple_repeat Simple_repeat 2 30 0 4 619 482 256 53 72 chr11 4511494 4511716 -117332140 - ORR1D2 LTR MaLR -61 358 154 4 619 182 318 56 11 chr11 4512774 4512863 -117330993 - MIRc SINE MIR -87 181 89 4 619 430 259 104 0 chr11 4512909 4513044 -117330812 + B1F SINE Alu 1 149 0 4 619 273 190 0 0 chr11 4513205 4513218 -117330638 + A-rich Low_complexity Low_complexity 1 13 0 4 619 1177 75 0 0 chr11 4513218 4513365 -117330491 + B1_Mus1 SINE Alu 1 147 -1 4 619 273 190 0 0 chr11 4513365 4513409 -117330447 + A-rich Low_complexity Low_complexity 14 57 0 4 619 628 329 9 24 chr11 4513448 4513678 -117330178 + Lx7 LINE L1 6949 7194 -279 4 619 904 228 11 0 chr11 4514350 4514530 -117329326 + B3 SINE B2 1 182 -34 4 619 5084 69 2 0 chr11 4514580 4515221 -117328635 + L1Md_F2 LINE L1 4945 5586 -297 4 619 7914 57 10 7 chr11 4515221 4516214 -117327642 + L1Md_F2 LINE L1 5587 6582 0 4 619 1413 77 6 0 chr11 4516230 4516413 -117327443 - B2_Mm1a SINE B2 -8 185 2 5 619 1015 89 22 78 chr11 4516419 4516590 -117327266 - ORR1A2 LTR MaLR -49 329 122 5 619 1280 111 5 35 chr11 4516606 4516803 -117327053 - B2_Mm1t SINE B2 -2 191 1 5 619 727 169 24 0 chr11 4516868 4516992 -117326864 - RSINE1 SINE B4 -35 130 4 5 619 623 218 30 8 chr11 4517384 4517518 -117326338 + B1_Mur2 SINE Alu 6 142 -7 5 619 312 288 0 0 chr11 4517637 4517717 -117326139 - ID2 SINE ID 0 83 4 5 619 738 182 181 6 chr11 4517907 4518084 -117325772 - B3 SINE B2 -6 210 3 5 619 207 0 0 0 chr11 4518128 4518151 -117325705 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 619 319 290 35 42 chr11 4518187 4518331 -117325525 - L1M5 LINE L1 -368 5794 5652 5 619 479 267 37 37 chr11 4518365 4518501 -117325355 - RSINE1 SINE B4 -19 146 11 5 619 571 131 29 39 chr11 4518544 4518647 -117325209 - B1_Mur4 SINE Alu -43 107 6 6 619 180 0 0 0 chr11 4518666 4518686 -117325170 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 619 1143 57 0 0 chr11 4518689 4518830 -117325026 - B1_Mus1 SINE Alu -6 142 2 6 619 302 349 54 18 chr11 4519116 4519227 -117324629 + MIR3 SINE MIR 88 202 -6 6 619 287 234 292 18 chr11 4519601 4519714 -117324142 - B1F2 SINE Alu -2 147 4 6 619 198 0 0 0 chr11 4519800 4519822 -117324034 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 6 619 486 90 0 0 chr11 4519822 4519889 -117323967 - B1_Mur4 SINE Alu -6 144 78 6 619 416 301 34 76 chr11 4519889 4520046 -117323810 - RSINE1 SINE B4 -72 220 10 6 619 238 254 73 0 chr11 4521225 4521280 -117322576 - ID4_ SINE ID -18 65 7 6 619 610 256 8 16 chr11 4521328 4521455 -117322401 + RSINE1 SINE B4 4 129 -36 6 619 405 0 0 0 chr11 4521456 4521501 -117322355 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 619 1162 63 0 0 chr11 4521571 4521714 -117322142 - B1_Mm SINE Alu 0 147 5 7 619 250 309 40 25 chr11 4521847 4521947 -117321909 + B1_Mur2 SINE Alu 47 149 0 7 619 498 224 152 86 chr11 4521950 4522032 -117321824 + ID_B1 SINE B4 1 213 -11 7 619 527 155 24 87 chr11 4522032 4522144 -117321712 + B1F1 SINE Alu 31 138 -11 7 619 245 29 0 29 chr11 4522144 4522179 -117321677 + (AATAG)n Simple_repeat Simple_repeat 4 37 0 7 619 527 155 24 87 chr11 4522179 4522193 -117321663 + B1F1 SINE Alu 139 149 0 7 619 1069 259 69 8 chr11 4522287 4522548 -117321308 + B4 SINE B4 1 277 -15 7 619 240 86 0 0 chr11 4522554 4522589 -117321267 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 619 544 332 183 32 chr11 4522630 4522876 -117320980 - LTR16E2 LTR ERVL -179 389 107 7 619 477 324 33 106 chr11 4522988 4523233 -117320623 + MLT1K LTR MaLR 1 227 -368 8 619 262 326 0 92 chr11 4523786 4523884 -117319972 + PB1D10 SINE Alu 1 89 -28 8 619 280 260 202 83 chr11 4523920 4524099 -117319757 + B3 SINE B2 1 206 -10 8 619 944 157 0 7 chr11 4524099 4524247 -117319609 + B1_Mur2 SINE Alu 1 147 -2 8 619 280 260 202 83 chr11 4524247 4524260 -117319596 + B3 SINE B2 207 216 0 8 619 970 111 35 0 chr11 4524434 4524578 -117319278 + B1_Mur4 SINE Alu 2 150 0 8 619 265 278 154 11 chr11 4524623 4524714 -117319142 + PB1D10 SINE Alu 1 104 -13 8 619 240 35 0 0 chr11 4524731 4524760 -117319096 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 619 1191 41 7 7 chr11 4524799 4524945 -117318911 - B1_Mm SINE Alu 0 147 2 8 619 595 256 111 18 chr11 4524946 4525117 -117318739 + B3 SINE B2 30 216 0 8 619 401 285 12 106 chr11 4525174 4525335 -117318521 + MER20 DNA MER1_type 7 152 -67 8 619 998 225 9 40 chr11 4525361 4525583 -117318273 + B3 SINE B2 2 216 0 9 619 341 294 55 0 chr11 4526545 4526654 -117317202 - PB1D10 SINE Alu 0 117 3 9 619 789 204 0 0 chr11 4526806 4526948 -117316908 + B1_Mus2 SINE Alu 1 142 -5 9 619 378 198 46 11 chr11 4527015 4527102 -117316754 + MLT1A1 LTR MaLR 108 197 -211 9 619 890 284 10 66 chr11 4527227 4527529 -117316327 + B4A SINE B4 2 286 -6 9 619 209 329 51 0 chr11 4527730 4527809 -117316047 + MIR3 SINE MIR 81 163 -45 9 619 504 280 0 8 chr11 4527815 4527934 -117315922 + BC1_Mm scRNA scRNA 1 118 -34 9 619 1126 88 0 0 chr11 4528084 4528232 -117315624 + B1_Mus1 SINE Alu 1 148 0 9 619 395 187 13 0 chr11 4528233 4528308 -117315548 - ID4 SINE ID -6 77 2 9 619 559 200 91 8 chr11 4528899 4529020 -117314836 + ID_B1 SINE B4 84 214 -10 9 619 201 39 0 0 chr11 4529020 4529046 -117314810 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 619 395 329 31 63 chr11 4529057 4529320 -117314536 + B4A SINE B4 4 265 -27 1 619 189 0 0 0 chr11 4529332 4529353 -117314503 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 619 411 21 0 0 chr11 4529353 4529400 -117314456 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 619 295 357 71 0 chr11 4529747 4529873 -117313983 + MIR3 SINE MIR 42 176 -32 1 619 431 247 21 11 chr11 4530540 4530632 -117313224 + B4A SINE B4 3 95 -197 1 619 451 264 11 0 chr11 4530632 4530723 -117313133 + RSINE1 SINE B4 2 93 -72 1 619 405 0 0 0 chr11 4530760 4530805 -117313051 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 619 659 254 0 0 chr11 4530805 4530943 -117312913 - B1F2 SINE Alu -11 138 1 1 619 334 288 35 26 chr11 4530944 4531058 -117312798 + MLT1F LTR MaLR 140 254 -341 1 619 423 271 106 57 chr11 4531049 4531341 -117312515 + ORR1D2 LTR MaLR 6 320 -39 1 619 691 284 82 0 chr11 4531560 4531754 -117312102 + B3 SINE B2 1 210 -6 1 619 400 234 58 82 chr11 4531833 4532126 -117311730 - RMER17D LTR ERVK -413 476 191 1 619 299 291 36 18 chr11 4532026 4532138 -117311718 + MTEb LTR MaLR 21 134 -240 1 619 357 229 47 24 chr11 4532180 4532265 -117311591 + MTEb LTR MaLR 293 379 0 1 619 333 0 0 0 chr11 4532360 4532397 -117311459 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 619 1640 215 113 8 chr11 4532490 4532869 -117310987 + MTD LTR MaLR 1 419 0 1 619 495 296 136 0 chr11 4532869 4533038 -117310818 + MLT1F LTR MaLR 357 548 0 1 619 373 362 78 36 chr11 4533080 4533361 -117310495 - ORR1E LTR MaLR -42 317 25 1 619 1359 70 0 0 chr11 4533803 4533974 -117309882 + B2_Mm1t SINE B2 1 171 -22 1 619 447 19 0 0 chr11 4533979 4534031 -117309825 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 1 619 695 134 8 0 chr11 4534283 4534402 -117309454 + (TCC)n Simple_repeat Simple_repeat 3 122 0 1 619 252 200 18 18 chr11 4534402 4534458 -117309398 + CT-rich Low_complexity Low_complexity 4 59 0 1 619 253 281 0 15 chr11 4534643 4534708 -117309148 + GA-rich Low_complexity Low_complexity 4 67 0 1 619 27 49 0 0 chr11 4534954 4534995 -117308861 + AT_rich Low_complexity Low_complexity 1 41 0 1 619 381 286 90 52 chr11 4534995 4535150 -117308706 - RSINE1 SINE B4 -3 162 2 1 619 311 232 0 115 chr11 4535212 4535290 -117308566 + RSINE1 SINE B4 97 165 0 1 619 336 316 0 78 chr11 4535350 4535453 -117308403 + PB1D10 SINE Alu 1 95 -22 1 619 884 81 20 7 chr11 4535473 4535622 -117308234 + (GAAA)n Simple_repeat Simple_repeat 4 154 0 1 619 1639 31 0 15 chr11 4535622 4535817 -117308039 + B2_Mm1a SINE B2 1 192 -1 1 619 188 243 29 0 chr11 4535843 4535886 -117307970 + GA-rich Low_complexity Low_complexity 2 44 0 1 619 1086 101 6 16 chr11 4535886 4536068 -117307788 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 619 188 243 29 0 chr11 4536068 4536094 -117307762 + polypurine Low_complexity Low_complexity 45 72 0 1 619 578 174 12 210 chr11 4536098 4536265 -117307591 + B1_Mus1 SINE Alu 1 134 -14 1 619 507 142 0 0 chr11 4536265 4536371 -117307485 + (CAGA)n Simple_repeat Simple_repeat 2 107 0 1 619 428 312 50 33 chr11 4536381 4536519 -117307337 + MLT1F2 LTR MaLR 341 481 -88 1 619 939 141 0 7 chr11 4536519 4536662 -117307194 - B1_Mur4 SINE Alu -6 144 3 1 619 293 345 57 106 chr11 4536662 4536756 -117307100 + MLT1F2 LTR MaLR 482 566 -3 1 619 332 255 37 47 chr11 4536845 4536952 -117306904 - PB1D10 SINE Alu -2 115 10 1 619 219 279 83 58 chr11 4536884 4537040 -117306816 - B4A SINE B4 -123 169 10 1 619 474 283 0 0 chr11 4537103 4537202 -117306654 + B1F1 SINE Alu 12 110 -39 1 619 517 279 34 39 chr11 4538077 4538282 -117305574 - L2a LINE L2 0 3426 3171 1 619 486 243 54 9 chr11 4538501 4538613 -117305243 + PB1D10 SINE Alu 1 117 0 1 619 213 39 0 0 chr11 4538632 4538658 -117305198 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 619 308 240 60 111 chr11 4538682 4538799 -117305057 + PB1D10 SINE Alu 7 117 0 1 619 574 283 177 25 chr11 4539215 4539458 -117304398 - B4 SINE B4 -10 282 3 1 619 269 298 19 23 chr11 4539471 4539507 -117304349 - ID2 SINE ID -53 99 32 1 619 295 254 0 0 chr11 4539507 4539562 -117304294 - tRNA-Ala-GCY_ tRNA tRNA -18 57 3 1 619 269 298 19 23 chr11 4539562 4539576 -117304280 - ID2 SINE ID -53 31 1 1 619 237 229 111 28 chr11 4539769 4539841 -117304015 + ID4_ SINE ID 5 82 -1 1 619 776 112 102 22 chr11 4540029 4540166 -117303690 - B1_Mur3 SINE Alu 0 149 2 1 619 225 0 0 0 chr11 4540848 4540873 -117302983 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 619 225 0 0 0 chr11 4540912 4540937 -117302919 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 619 297 0 0 0 chr11 4540976 4541009 -117302847 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1 619 1169 127 6 0 chr11 4541009 4541172 -117302684 - B2_Mm1t SINE B2 -27 166 3 1 619 248 295 22 11 chr11 4541744 4541833 -117302023 - RMER1C Other Other -146 1196 1107 1 619 257 324 0 0 chr11 4541784 4541858 -117301998 - Lx8 LINE L1 -207 7266 7193 1 619 235 330 11 32 chr11 4541946 4542040 -117301816 - MIR SINE MIR -166 96 5 1 619 245 282 51 13 chr11 4542206 4542285 -117301571 - MER3 DNA MER1_type -127 82 1 1 619 326 311 31 14 chr11 4543626 4543824 -117300032 - L1MA10 LINE L1 -10 6324 5966 1 619 603 138 178 17 chr11 4544311 4544429 -117299427 + B1_Mur4 SINE Alu 1 137 -13 1 619 274 256 84 60 chr11 4544461 4544544 -117299312 + MT2B LTR ERVL 176 260 -341 1 619 468 248 0 29 chr11 4544483 4544587 -117299269 + B1_Mur1 SINE Alu 48 148 -1 1 619 21 0 0 0 chr11 4545408 4545429 -117298427 + AT_rich Low_complexity Low_complexity 1 21 0 1 619 1466 23 81 0 chr11 4545431 4545590 -117298266 + B2_Mm1a SINE B2 2 160 -33 1 619 207 0 0 0 chr11 4545590 4545613 -117298243 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 619 1466 23 81 0 chr11 4545613 4545626 -117298230 + B2_Mm1a SINE B2 161 186 -7 1 619 21 36 0 0 chr11 4545657 4545685 -117298171 + AT_rich Low_complexity Low_complexity 1 28 0 1 619 325 237 0 0 chr11 4545869 4545928 -117297928 - tRNA-Ala-GCG tRNA tRNA -8 67 9 1 619 319 296 0 0 chr11 4545870 4545941 -117297915 - ID4_ SINE ID -11 72 2 1 619 23 0 0 0 chr11 4545977 4546000 -117297856 + AT_rich Low_complexity Low_complexity 1 23 0 1 619 582 167 16 11 chr11 4546035 4546161 -117297695 + B1_Mus2 SINE Alu 2 126 -21 1 619 22 70 0 0 chr11 4547540 4547583 -117296273 + AT_rich Low_complexity Low_complexity 1 43 0 1 619 537 93 0 0 chr11 4547704 4547779 -117296077 + B1_Mus2 SINE Alu 72 146 -1 1 619 225 0 0 0 chr11 4547779 4547804 -117296052 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 619 298 331 137 34 chr11 4547811 4547839 -117296017 - B3A SINE B2 -2 196 4 1 619 706 238 82 0 chr11 4547839 4547986 -117295870 - RSINE1 SINE B4 -2 163 5 1 619 724 259 20 0 chr11 4548043 4548190 -117295666 - RSINE1 SINE B4 -6 159 10 1 619 588 189 8 59 chr11 4548283 4548401 -117295455 + PB1D9 SINE Alu 6 117 -3 1 619 1229 94 16 37 chr11 4548388 4548576 -117295280 - B2_Mm2 SINE B2 -10 185 2 1 619 866 239 5 44 chr11 4548628 4548834 -117295022 - B3A SINE B2 0 198 1 1 619 368 259 12 36 chr11 4548889 4548973 -117294883 + ID4 SINE ID 1 82 -1 1 619 211 296 0 0 chr11 4548996 4549050 -117294806 - B1F SINE Alu -5 144 91 1 619 912 232 50 0 chr11 4549083 4549264 -117294592 - B3A SINE B2 -8 190 1 1 619 216 209 0 23 chr11 4549696 4549740 -117294116 + CT-rich Low_complexity Low_complexity 3 45 0 1 619 264 230 17 17 chr11 4549989 4550104 -117293752 + (CATA)n Simple_repeat Simple_repeat 2 116 0 1 619 575 157 119 18 chr11 4550194 4550323 -117293533 + B1F SINE Alu 10 149 0 1 619 273 298 105 15 chr11 4550466 4550599 -117293257 - MIRc SINE MIR -63 205 61 1 619 210 71 0 0 chr11 4551042 4551070 -117292786 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 619 304 280 20 7 chr11 4551086 4551237 -117292619 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 619 562 119 12 0 chr11 4551263 4551347 -117292509 - B1_Mus2 SINE Alu 0 147 63 1 619 24 32 0 0 chr11 4551433 4551464 -117292392 + AT_rich Low_complexity Low_complexity 1 31 0 1 619 183 80 0 0 chr11 4552181 4552206 -117291650 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 1 619 21 57 0 0 chr11 4552432 4552467 -117291389 + AT_rich Low_complexity Low_complexity 1 35 0 1 619 260 337 130 0 chr11 4552482 4552574 -117291282 - RSINE1 SINE B4 -57 108 5 1 619 987 189 385 11 chr11 4552574 4552857 -117290999 - MTD LTR MaLR 0 419 31 1 619 276 194 10 31 chr11 4552915 4553011 -117290845 + CT-rich Low_complexity Low_complexity 2 95 0 1 619 329 226 103 35 chr11 4553016 4553103 -117290753 - PB1D10 SINE Alu -24 93 1 1 619 300 245 75 84 chr11 4553019 4553126 -117290730 - ID_B1 SINE B4 -53 171 66 1 619 425 303 48 21 chr11 4553135 4553280 -117290576 - B1F2 SINE Alu 0 149 1 1 619 834 34 254 0 chr11 4553841 4553959 -117289897 - B1_Mus1 SINE Alu 0 148 1 1 619 678 204 138 16 chr11 4554016 4554205 -117289651 - B3 SINE B2 0 216 5 1 619 274 93 0 0 chr11 4554223 4554266 -117289590 - RMER1B Other Other -4 1062 1020 1 619 734 263 7 0 chr11 4554272 4554424 -117289432 - B3 SINE B2 -36 180 28 1 619 290 307 80 102 chr11 4554475 4554538 -117289318 + B4 SINE B4 43 183 -109 1 619 867 135 0 23 chr11 4554538 4554667 -117289189 + B1_Mur3 SINE Alu 23 148 -1 1 619 290 307 80 102 chr11 4554667 4554700 -117289156 + B4 SINE B4 184 262 -30 1 619 237 323 15 0 chr11 4556448 4556513 -117287343 + ID2 SINE ID 5 70 -13 1 619 197 132 26 0 chr11 4556514 4556552 -117287304 + GA-rich Low_complexity Low_complexity 1 39 0 1 619 648 188 0 25 chr11 4556828 4556948 -117286908 + PB1D10 SINE Alu 1 117 0 2 619 228 35 0 0 chr11 4556969 4556998 -117286858 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 619 788 206 20 0 chr11 4557026 4557172 -117286684 - B1_Mur3 SINE Alu 0 149 1 2 619 493 252 156 0 chr11 4557214 4557349 -117286507 + RSINE1 SINE B4 6 161 -4 2 619 588 300 11 25 chr11 4557457 4557611 -117286245 + ID_B1 SINE B4 69 220 -72 2 619 359 68 0 17 chr11 4557612 4557672 -117286184 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 619 201 182 0 0 chr11 4557672 4557705 -117286151 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 619 715 172 103 15 chr11 4557864 4558000 -117285856 - B1_Mur1 SINE Alu 0 149 2 2 619 246 238 95 0 chr11 4558000 4558063 -117285793 - ID4_ SINE ID -13 70 2 2 619 271 267 12 62 chr11 4558615 4558695 -117285161 - L2b LINE L2 -22 3353 3278 2 619 223 283 89 0 chr11 4558833 4558921 -117284935 + MIRm SINE MIR 84 177 -91 2 619 695 282 34 17 chr11 4559484 4559661 -117284195 + B3 SINE B2 24 203 -13 2 619 218 156 22 0 chr11 4559662 4559707 -117284149 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 2 619 414 0 0 0 chr11 4559710 4559756 -117284100 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 2 619 234 192 0 0 chr11 4559749 4559801 -117284055 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 2 619 426 274 25 41 chr11 4560064 4560186 -117283670 + PB1 SINE Alu 1 120 -7 2 619 612 220 28 28 chr11 4560293 4560438 -117283418 + B1_Mus2 SINE Alu 2 146 -1 2 619 310 242 297 0 chr11 4561627 4561744 -117282112 + B3 SINE B2 8 162 -54 2 619 297 125 0 0 chr11 4561744 4561800 -117282056 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 619 259 315 11 63 chr11 4561935 4562030 -117281826 - ID4_ SINE ID -62 90 1 2 619 367 268 131 0 chr11 4562148 4562301 -117281555 - L1MC LINE L1 -2143 5739 5567 2 619 235 247 136 0 chr11 4562715 4562796 -117281060 - PB1 SINE Alu -28 99 8 2 619 1007 199 39 10 chr11 4562844 4563047 -117280809 - B3 SINE B2 -6 210 2 2 619 579 244 0 25 chr11 4563070 4563188 -117280668 - PB1D10 SINE Alu -2 115 1 2 619 210 37 0 0 chr11 4563220 4563247 -117280609 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 2 619 923 111 15 0 chr11 4563247 4563382 -117280474 + B1_Mur2 SINE Alu 13 149 0 2 619 285 234 163 52 chr11 4563873 4564008 -117279848 + B4 SINE B4 2 151 -141 2 619 3420 21 8 0 chr11 4564360 4564747 -117279109 - RLTR10 LTR ERVK 0 390 1 2 619 14904 27 43 41 chr11 4564749 4566726 -117277130 - RLTR10-int LTR ERVK -3 1984 3 2 619 3384 26 8 0 chr11 4566728 4567115 -117276741 - RLTR10 LTR ERVK 0 390 1 2 619 385 239 0 0 chr11 4567246 4567313 -117276543 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 2 619 22 0 0 0 chr11 4567324 4567346 -117276510 + AT_rich Low_complexity Low_complexity 1 22 0 2 619 1012 277 120 30 chr11 4567391 4567900 -117275956 - Lx8 LINE L1 -29 7444 6890 2 619 1206 49 21 0 chr11 4569697 4569841 -117274015 + B1_Mus1 SINE Alu 2 148 0 2 619 189 0 0 0 chr11 4569841 4569862 -117273994 + (A)n Simple_repeat Simple_repeat 1 21 0 2 619 400 264 46 19 chr11 4570625 4570733 -117273123 - PB1D7 SINE Alu -8 112 2 2 619 1218 68 0 0 chr11 4571066 4571214 -117272642 + B1_Mus1 SINE Alu 1 148 0 2 619 472 134 102 102 chr11 4571575 4571683 -117272173 + MT2B LTR ERVL 150 257 -344 2 619 916 38 0 181 chr11 4571597 4571757 -117272099 + B1_Mus1 SINE Alu 18 148 0 2 619 245 353 45 60 chr11 4571931 4572130 -117271726 - MIR SINE MIR -4 258 63 2 619 820 184 187 16 chr11 4573570 4573752 -117270104 - B3 SINE B2 0 216 4 2 619 273 302 79 0 chr11 4573970 4574096 -117269760 + Charlie18a DNA MER1_type 64 199 -143 2 619 213 357 70 18 chr11 4574099 4574213 -117269643 - L2a LINE L2 0 3426 3307 2 619 203 336 93 31 chr11 4574281 4574410 -117269446 - L2a LINE L2 -268 3158 3022 2 619 257 179 138 35 chr11 4574512 4574570 -117269286 + B1F SINE Alu 85 148 -1 2 619 329 297 62 42 chr11 4575257 4575401 -117268455 - L2b LINE L2 0 3375 3229 2 619 411 232 0 0 chr11 4575797 4575879 -117267977 - ID4 SINE ID 0 83 2 2 619 342 228 165 0 chr11 4576023 4576102 -117267754 + PB1D10 SINE Alu 21 112 -5 2 619 380 321 20 54 chr11 4576453 4576601 -117267255 - ID_B1 SINE B4 0 224 82 2 619 509 183 0 0 chr11 4576700 4576782 -117267074 - PB1D9 SINE Alu -9 111 30 2 619 285 301 147 118 chr11 4576782 4576818 -117267038 - B4A SINE B4 -74 218 2 2 619 526 172 86 0 chr11 4576818 4576911 -117266945 - B3 SINE B2 -114 102 2 2 619 387 0 0 0 chr11 4577099 4577142 -117266714 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 619 1604 37 21 0 chr11 4577778 4577966 -117265890 + B2_Mm1t SINE B2 2 193 0 2 619 515 248 45 53 chr11 4577966 4578098 -117265758 - ID_B1 SINE B4 -14 210 80 2 619 458 287 43 0 chr11 4578101 4578216 -117265640 - PB1D7 SINE Alu 0 120 1 2 619 229 290 48 97 chr11 4578434 4578537 -117265319 + MIRm SINE MIR 165 262 -14 2 619 319 80 0 96 chr11 4579612 4579695 -117264161 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 619 183 167 0 0 chr11 4580135 4580177 -117263679 + GA-rich Low_complexity Low_complexity 3 44 0 2 619 308 277 10 41 chr11 4580555 4580621 -117263235 - Charlie15a DNA MER1_type -21 203 137 2 619 1206 49 14 0 chr11 4580621 4580765 -117263091 + B1_Mus2 SINE Alu 1 146 -1 2 619 308 277 10 41 chr11 4580765 4580796 -117263060 - Charlie15a DNA MER1_type -88 136 109 2 619 236 266 126 11 chr11 4581797 4581892 -117261964 + PB1D9 SINE Alu 15 120 0 2 619 211 28 0 53 chr11 4582152 4582190 -117261666 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 2 619 1193 62 0 7 chr11 4582190 4582337 -117261519 - B1_Mus2 SINE Alu 0 147 2 2 619 183 279 108 54 chr11 4583614 4583762 -117260094 - MIR SINE MIR -91 171 16 2 619 647 90 208 24 chr11 4584982 4585107 -117258749 - B1_Mur3 SINE Alu 0 149 2 2 619 282 204 241 26 chr11 4585764 4585880 -117257976 - MIRb SINE MIR -126 142 2 2 619 612 40 0 0 chr11 4585974 4586049 -117257807 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 619 736 263 66 6 chr11 4586126 4586336 -117257520 - B3A SINE B2 -9 207 1 2 619 277 245 9 0 chr11 4586359 4586428 -117257428 - PB1D10 SINE Alu -75 74 3 2 619 958 129 119 28 chr11 4586441 4586584 -117257272 + B2_Mm1t SINE B2 1 164 -29 2 619 377 65 65 0 chr11 4586584 4586646 -117257210 + L1_Mus1 LINE L1 6502 6567 0 2 619 958 129 119 28 chr11 4586646 4586678 -117257178 + B2_Mm1t SINE B2 165 192 -1 2 619 446 81 22 3 chr11 4586824 4586933 -117256923 + B2_Mm2 SINE B2 48 195 0 2 620 734 230 62 31 chr11 4587619 4587812 -117256044 + B3 SINE B2 1 199 -17 2 620 511 215 31 55 chr11 4588532 4588579 -117255277 + B4A SINE B4 43 86 -206 2 620 517 250 8 33 chr11 4588579 4588699 -117255157 + B1_Mur2 SINE Alu 1 117 -32 2 620 681 231 132 29 chr11 4589453 4589627 -117254229 - B3 SINE B2 -19 197 6 2 620 360 0 0 0 chr11 4589872 4589912 -117253944 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 620 3148 126 35 94 chr11 4589944 4590230 -117253626 - RLTR12A LTR ERVK 0 568 287 2 620 1087 43 65 0 chr11 4590230 4590368 -117253488 - B1_Mus2 SINE Alu 0 147 1 2 620 3148 126 35 94 chr11 4590368 4590685 -117253171 - RLTR12A LTR ERVK -282 286 1 2 620 866 230 13 58 chr11 4590840 4591066 -117252790 - B3 SINE B2 0 216 1 2 620 970 155 0 7 chr11 4591579 4591728 -117252128 + B1_Mus1 SINE Alu 1 148 0 2 620 457 214 16 16 chr11 4591728 4591856 -117252000 + GA-rich Low_complexity Low_complexity 1 128 0 2 620 417 239 0 0 chr11 4592073 4592190 -117251666 + (TG)n Simple_repeat Simple_repeat 1 117 0 2 620 1454 74 11 5 chr11 4592760 4592950 -117250906 - B2_Mm2 SINE B2 -4 191 1 2 620 233 311 59 0 chr11 4592950 4593069 -117250787 - L1M5 LINE L1 -379 5745 5620 2 620 288 259 0 0 chr11 4593076 4593134 -117250722 + B1F SINE Alu 2 59 -90 2 620 943 249 29 19 chr11 4593259 4593468 -117250388 - B3 SINE B2 -5 211 1 2 620 510 274 89 22 chr11 4593475 4593654 -117250202 - B3A SINE B2 0 198 8 2 620 480 18 0 0 chr11 4593726 4593783 -117250073 + (TTTC)n Simple_repeat Simple_repeat 1 57 0 2 620 921 69 0 0 chr11 4593783 4593899 -117249957 - B1_Mus2 SINE Alu -14 133 18 2 620 1186 60 7 0 chr11 4593907 4594058 -117249798 + MURVY-LTR LTR ERV1 12 163 -356 2 620 343 229 162 54 chr11 4594319 4594430 -117249426 - PB1D7 SINE Alu -26 123 1 2 620 796 181 15 0 chr11 4594451 4594584 -117249272 + B1_Mur2 SINE Alu 3 137 -12 2 620 243 0 0 0 chr11 4594585 4594612 -117249244 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 620 21 0 0 0 chr11 4594628 4594649 -117249207 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 291 268 110 0 chr11 4594672 4594754 -117249102 + L2a LINE L2 3316 3406 -20 2 620 314 221 70 0 chr11 4594768 4594854 -117249002 + B4A SINE B4 2 93 -199 2 620 3435 109 200 29 chr11 4594864 4595476 -117248380 + RMER19A LTR ERVK 1 717 -20 2 620 1277 88 0 0 chr11 4595476 4595636 -117248220 + B2_Mm1a SINE B2 1 160 -33 2 620 315 0 0 0 chr11 4595636 4595671 -117248185 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 620 786 173 0 8 chr11 4595709 4595824 -117248032 + B1_Mur4 SINE Alu 24 138 -12 2 620 1255 34 0 0 chr11 4595824 4595971 -117247885 + B1_Mm SINE Alu 1 147 0 2 620 786 173 0 8 chr11 4595971 4595983 -117247873 + B1_Mur4 SINE Alu 139 150 0 2 620 272 258 76 0 chr11 4596048 4596114 -117247742 + B4A SINE B4 212 282 -10 2 620 239 318 0 0 chr11 4596121 4596187 -117247669 + (CATA)n Simple_repeat Simple_repeat 3 68 0 3 620 353 268 14 0 chr11 4596241 4596312 -117247544 - ID4 SINE ID -10 73 2 3 620 507 202 33 16 chr11 4596372 4596493 -117247363 - PB1 SINE Alu 0 127 5 3 620 273 171 0 0 chr11 4596622 4596663 -117247193 - PB1 SINE Alu -53 74 34 3 620 549 44 0 0 chr11 4596670 4596738 -117247118 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 620 334 273 102 0 chr11 4596748 4596836 -117247020 - PB1D10 SINE Alu -20 97 1 3 620 431 140 29 50 chr11 4596850 4597095 -117246761 + (TG)n Simple_repeat Simple_repeat 1 239 0 3 620 411 136 53 26 chr11 4597156 4597307 -117246549 + (TG)n Simple_repeat Simple_repeat 1 155 0 3 620 717 268 56 20 chr11 4597313 4597511 -117246345 - B4A SINE B4 -1 291 87 3 620 434 272 43 111 chr11 4598284 4598491 -117245365 + MTD LTR MaLR 3 195 -224 3 620 1187 61 0 7 chr11 4598526 4598675 -117245181 + B1_Mus1 SINE Alu 1 148 0 3 620 201 139 0 0 chr11 4598675 4598699 -117245157 + (A)n Simple_repeat Simple_repeat 1 24 0 3 620 1659 21 5 10 chr11 4598699 4598893 -117244963 + B2_Mm1a SINE B2 1 193 0 3 620 201 139 0 0 chr11 4598893 4598904 -117244952 + (A)n Simple_repeat Simple_repeat 1 11 0 3 620 542 256 0 0 chr11 4598925 4599042 -117244814 + B1_Mur1 SINE Alu 33 149 0 3 620 269 287 45 11 chr11 4599036 4599124 -117244732 + MTD LTR MaLR 181 271 -136 3 620 225 146 0 0 chr11 4599183 4599206 -117244650 + (T)n Simple_repeat Simple_repeat 1 23 0 3 620 1664 31 0 0 chr11 4599206 4599398 -117244458 - B2_Mm1a SINE B2 0 193 2 3 620 225 146 0 0 chr11 4599398 4599415 -117244441 + (T)n Simple_repeat Simple_repeat 1 17 0 3 620 838 267 47 28 chr11 4599422 4599634 -117244222 - B3 SINE B2 0 216 1 3 620 249 260 49 61 chr11 4599723 4599805 -117244051 - ID SINE ID -142 82 2 3 620 667 100 0 0 chr11 4599848 4599938 -117243918 + B2_Mm2 SINE B2 1 90 -105 3 620 2754 136 72 19 chr11 4599941 4600501 -117243355 - RMER17D LTR ERVK -2 887 252 3 620 475 63 16 0 chr11 4600445 4600508 -117243348 - B2_Mm1a SINE B2 -69 124 61 3 620 597 196 40 74 chr11 4600591 4600740 -117243116 - B1_Mur4 SINE Alu -5 145 2 3 620 223 287 91 51 chr11 4600924 4601088 -117242768 - B3A SINE B2 -26 169 2 3 620 1130 76 14 0 chr11 4601101 4601246 -117242610 - B1_Mus2 SINE Alu 0 147 1 3 620 233 286 39 85 chr11 4601263 4601393 -117242463 - MIRb SINE MIR -84 184 61 3 620 186 226 45 61 chr11 4601434 4601500 -117242356 - MIR SINE MIR -78 130 66 3 620 801 188 11 8 chr11 4601621 4601769 -117242087 + B3 SINE B2 1 153 -45 3 620 869 168 35 0 chr11 4602342 4602485 -117241371 + B1_Mus1 SINE Alu 1 148 0 3 620 1528 68 5 0 chr11 4602809 4603001 -117240855 + B2_Mm1a SINE B2 1 193 0 3 620 437 176 0 26 chr11 4603111 4603187 -117240669 + B3 SINE B2 1 74 -142 3 620 216 167 0 0 chr11 4603254 4603290 -117240566 + GA-rich Low_complexity Low_complexity 3 38 0 3 620 671 189 49 7 chr11 4603304 4603448 -117240408 + B1_Mur4 SINE Alu 1 150 0 3 620 248 348 40 60 chr11 4605409 4605660 -117238196 - L2 LINE L2 -526 2893 2648 3 620 728 176 84 0 chr11 4605667 4605798 -117238058 + B1_Mus2 SINE Alu 5 146 -1 3 620 488 296 13 27 chr11 4605875 4606024 -117237832 - B1F2 SINE Alu -1 148 2 3 620 670 268 32 14 chr11 4606057 4606243 -117237613 - B3A SINE B2 -1 215 24 3 620 232 347 31 0 chr11 4606266 4606364 -117237492 - L2 LINE L2 -971 2448 2348 3 620 615 228 39 16 chr11 4606372 4606501 -117237355 + ID_B1 SINE B4 81 212 -12 3 620 22 35 0 0 chr11 4606688 4606717 -117237139 + AT_rich Low_complexity Low_complexity 1 29 0 3 620 1249 48 0 0 chr11 4606722 4606869 -117236987 + B1_Mus2 SINE Alu 1 147 0 3 620 731 237 147 21 chr11 4606890 4607080 -117236776 - B3 SINE B2 -2 214 1 3 620 1330 96 37 0 chr11 4607090 4607277 -117236579 - B2_Mm2 SINE B2 -1 194 1 3 620 235 269 145 63 chr11 4607283 4607442 -117236414 + YREP_Mm Unknown Unknown 123 294 -1518 3 620 942 138 0 7 chr11 4607318 4607457 -117236399 - B1_Mus1 SINE Alu -2 146 9 3 620 1160 103 0 60 chr11 4607467 4607489 -117236367 - B2_Mm2 SINE B2 -20 175 159 3 620 243 0 0 0 chr11 4607489 4607516 -117236340 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 620 1160 103 0 60 chr11 4607516 4607678 -117236178 - B2_Mm2 SINE B2 -37 158 2 3 620 501 280 13 65 chr11 4607682 4607835 -117236021 - B1_Mur1 SINE Alu -2 147 3 3 620 845 84 8 16 chr11 4607907 4608028 -117235828 + PB1D9 SINE Alu 1 120 0 3 620 1154 168 15 5 chr11 4608043 4608241 -117235615 + URR1B DNA MER1_type 26 225 0 3 620 792 125 31 8 chr11 4608244 4608373 -117235483 - B1_Mur1 SINE Alu -17 132 1 3 620 1189 35 35 0 chr11 4608404 4608546 -117235310 - B1_Mm SINE Alu 0 147 1 3 620 697 177 348 0 chr11 4608600 4608758 -117235098 + B3 SINE B2 1 213 -3 3 620 717 224 8 0 chr11 4608795 4608929 -117234927 + B1_Mur1 SINE Alu 5 139 -10 3 620 953 150 7 7 chr11 4608939 4609087 -117234769 + B1_Mus1 SINE Alu 1 148 0 3 620 406 238 37 28 chr11 4609111 4609219 -117234637 + PB1D7 SINE Alu 1 109 -11 3 620 850 282 58 19 chr11 4609718 4610130 -117233726 - L1MA5 LINE L1 -388 5912 5485 3 620 553 199 29 214 chr11 4610182 4610355 -117233501 - B1_Mur3 SINE Alu -8 141 1 3 620 1313 90 0 31 chr11 4610360 4610555 -117233301 - B2_Mm2 SINE B2 -5 190 2 3 620 476 105 34 34 chr11 4610608 4610697 -117233159 - B1_Mur4 SINE Alu 0 150 62 3 620 675 251 140 31 chr11 4610857 4611050 -117232806 + ID_B1 SINE B4 1 214 -10 3 620 1066 52 8 0 chr11 4611305 4611439 -117232417 + B1_Mm SINE Alu 13 147 0 3 620 343 258 3 21 chr11 4611539 4611644 -117232212 - PB1D10 SINE Alu -1 119 14 3 620 197 351 14 0 chr11 4611907 4611981 -117231875 + MER5B DNA MER1_type 52 126 -52 3 620 380 304 30 65 chr11 4612063 4612232 -117231624 - RSINE1 SINE B4 0 165 3 3 620 329 200 0 0 chr11 4612729 4612784 -117231072 - ID4_ SINE ID -21 62 8 3 620 948 207 0 40 chr11 4612815 4613016 -117230840 - B3 SINE B2 -21 195 3 3 620 612 197 39 0 chr11 4613017 4613144 -117230712 - B1_Mur1 SINE Alu 0 149 18 3 620 248 293 24 65 chr11 4613051 4613175 -117230681 - MT2B LTR ERVL -333 268 150 3 620 479 62 49 0 chr11 4613338 4613419 -117230437 - L1Md_F2 LINE L1 -1 6581 6497 3 620 884 176 202 17 chr11 4613435 4613608 -117230248 - B3 SINE B2 -9 207 3 3 620 556 258 26 26 chr11 4613724 4613879 -117229977 - ID_B1 SINE B4 0 224 70 3 620 377 232 19 30 chr11 4613870 4613988 -117229868 - PB1 SINE Alu -91 220 33 3 620 1631 26 21 0 chr11 4614201 4614390 -117229466 + B2_Mm1a SINE B2 1 193 0 3 620 258 260 67 48 chr11 4614421 4614526 -117229330 + MT2B LTR ERVL 149 255 -346 3 620 463 156 124 10 chr11 4614447 4614544 -117229312 + PB1D9 SINE Alu 12 119 -1 3 620 1099 78 0 7 chr11 4615027 4615169 -117228687 - B1_Mm SINE Alu -5 142 2 3 620 739 235 0 13 chr11 4615223 4615237 -117228619 - B1_Mur2 SINE Alu 0 149 137 3 620 261 0 0 0 chr11 4615237 4615266 -117228590 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 3 620 739 235 0 13 chr11 4615266 4615402 -117228454 - B1_Mur2 SINE Alu -13 136 1 3 620 462 214 64 0 chr11 4615494 4615624 -117228232 - B1_Mur1 SINE Alu -3 146 7 3 620 380 296 198 16 chr11 4615608 4615790 -117228066 - MLT1F1 LTR MaLR -47 522 308 3 620 303 254 0 29 chr11 4617207 4617276 -117226580 + ID4_ SINE ID 2 68 -15 3 620 934 225 33 29 chr11 4617291 4617501 -117226355 + B3 SINE B2 5 215 -1 3 620 204 351 106 18 chr11 4617841 4617954 -117225902 - L2a LINE L2 -29 3397 3275 3 620 858 166 7 40 chr11 4618019 4618170 -117225686 + B1_Mus2 SINE Alu 1 146 -1 3 620 689 273 79 0 chr11 4618170 4618397 -117225459 + MER2 DNA MER2_type 94 338 -7 3 620 300 324 129 14 chr11 4619313 4619523 -117224333 - MIR SINE MIR -13 249 16 3 620 250 280 59 20 chr11 4619630 4619732 -117224124 - MIR3 SINE MIR -17 191 86 3 620 237 323 141 39 chr11 4620080 4620286 -117223570 + MIRb SINE MIR 1 227 -41 3 620 386 238 12 0 chr11 4620357 4620437 -117223419 - ID4_ SINE ID 0 83 3 3 620 193 278 12 77 chr11 4620489 4620581 -117223275 - MIR3 SINE MIR -109 167 76 3 620 223 367 77 39 chr11 4621484 4621640 -117222216 + MIRc SINE MIR 7 168 -100 3 620 702 308 70 32 chr11 4621625 4622033 -117221823 - L2a LINE L2 0 3387 2991 3 620 692 225 181 0 chr11 4622624 4622806 -117221050 - B3 SINE B2 0 216 2 3 620 549 212 79 50 chr11 4622841 4622980 -117220876 + B1_Mur1 SINE Alu 7 149 0 3 620 1063 95 0 13 chr11 4623005 4623143 -117220713 + B1_Mus1 SINE Alu 1 137 -11 3 620 198 0 0 0 chr11 4623143 4623165 -117220691 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 620 381 276 0 0 chr11 4623175 4623251 -117220605 + ID4 SINE ID 3 78 -5 3 620 538 187 18 18 chr11 4624060 4624169 -117219687 - B1F SINE Alu -40 109 1 3 620 316 248 12 135 chr11 4624169 4624222 -117219634 - MT2B LTR ERVL -337 263 122 3 620 248 200 55 0 chr11 4624175 4624230 -117219626 + PB1 SINE Alu 70 127 0 3 620 268 270 9 107 chr11 4624295 4624407 -117219449 - B1_Mur3 SINE Alu -1 148 48 4 620 456 270 175 0 chr11 4625374 4625511 -117218345 - RSINE1 SINE B4 -4 161 1 4 620 362 329 7 47 chr11 4626087 4626237 -117217619 + ID_B1 SINE B4 79 222 -2 4 620 432 246 39 31 chr11 4626109 4626239 -117217617 + B1F1 SINE Alu 16 146 -3 4 620 234 301 42 21 chr11 4626248 4626264 -117217592 + ID_B1 SINE B4 76 172 -52 4 620 283 244 51 13 chr11 4626264 4626343 -117217513 + PB1D10 SINE Alu 10 91 -26 4 620 345 47 0 0 chr11 4627141 4627184 -117216672 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 620 512 194 39 0 chr11 4627202 4627305 -117216551 + PB1D9 SINE Alu 14 120 0 4 620 987 165 4 8 chr11 4627320 4627562 -117216294 + GA-rich Low_complexity Low_complexity 1 241 0 4 620 443 298 9 17 chr11 4627562 4627678 -117216178 - PB1 SINE Alu -11 116 2 4 620 1235 54 0 0 chr11 4627712 4627859 -117215997 - B1_Mus2 SINE Alu 0 147 1 4 620 1176 56 7 0 chr11 4629115 4629259 -117214597 + B1_Mus2 SINE Alu 3 147 0 4 620 455 223 69 69 chr11 4630645 4630775 -117213081 + ID_B1 SINE B4 83 212 -12 4 620 1084 153 0 6 chr11 4631385 4631563 -117212293 + B2_Mm2 SINE B2 2 178 -17 4 620 422 266 125 7 chr11 4632846 4632990 -117210866 - RSINE1 SINE B4 -3 162 2 4 620 849 216 23 6 chr11 4633043 4633220 -117210636 - B3 SINE B2 -6 210 31 4 620 1152 78 6 0 chr11 4633228 4633395 -117210461 + B2_Mm1a SINE B2 24 191 -2 4 620 1289 34 0 0 chr11 4633412 4633559 -117210297 + B1_Mus2 SINE Alu 1 147 0 4 620 226 217 0 0 chr11 4633572 4633618 -117210238 - B3 SINE B2 -169 47 2 4 620 919 134 101 24 chr11 4633675 4633843 -117210013 + B2_Mm2 SINE B2 2 182 -13 4 620 258 32 0 0 chr11 4633851 4633882 -117209974 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 620 336 48 0 0 chr11 4633884 4633926 -117209930 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 620 572 291 85 20 chr11 4636831 4637136 -117206720 - L1ME4a LINE L1 -66 6058 5734 4 620 204 40 0 0 chr11 4639456 4639481 -117204375 + (TCCC)n Simple_repeat Simple_repeat 3 27 0 4 620 261 0 0 0 chr11 4641243 4641272 -117202584 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 620 236 175 35 17 chr11 4641896 4641954 -117201902 + CT-rich Low_complexity Low_complexity 2 60 0 4 620 203 236 55 0 chr11 4642183 4642238 -117201618 + L2b LINE L2 3275 3332 -43 4 620 293 320 41 39 chr11 4643059 4643213 -117200643 + MIRc SINE MIR 14 173 -103 4 620 252 306 57 70 chr11 4644232 4644390 -117199466 - MIRb SINE MIR -79 197 42 4 620 23 68 0 0 chr11 4646454 4646498 -117197358 + GC_rich Low_complexity Low_complexity 1 44 0 4 620 21 0 0 0 chr11 4646740 4646761 -117197095 + GC_rich Low_complexity Low_complexity 1 21 0 4 620 29 70 0 0 chr11 4646783 4646840 -117197016 + GC_rich Low_complexity Low_complexity 1 57 0 4 620 287 179 32 57 chr11 4646993 4647086 -117196770 + (CTCG)n Simple_repeat Simple_repeat 2 90 0 4 620 501 62 0 0 chr11 4647086 4647151 -117196705 + (CCG)n Simple_repeat Simple_repeat 2 66 0 4 620 263 267 26 32 chr11 4647151 4647253 -117196603 + (CCCG)n Simple_repeat Simple_repeat 3 105 0 4 620 210 222 114 57 chr11 4647557 4647662 -117196194 - MIRm SINE MIR -135 141 31 4 620 236 357 67 21 chr11 4648652 4648819 -117195037 + MIRc SINE MIR 6 176 -92 4 620 189 264 0 54 chr11 4649771 4649827 -117194029 + MIRc SINE MIR 96 148 -120 4 620 190 258 142 47 chr11 4651042 4651148 -117192708 + MIRb SINE MIR 29 151 -117 4 620 1224 48 0 14 chr11 4651468 4651615 -117192241 + B1_Mus2 SINE Alu 1 145 -2 4 620 576 0 0 0 chr11 4651617 4651681 -117192175 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 620 704 195 127 23 chr11 4654171 4654344 -117189512 - B3A SINE B2 -3 195 5 4 620 717 196 122 6 chr11 4656338 4656502 -117187354 + B3 SINE B2 2 184 -32 4 620 258 283 101 54 chr11 4657042 4657210 -117186646 + MIR3 SINE MIR 3 178 -30 4 620 209 160 6 62 chr11 4657379 4657438 -117186418 + L2b LINE L2 3330 3426 0 4 620 279 0 0 0 chr11 4658134 4658165 -117185691 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 4 620 1117 96 14 0 chr11 4658165 4658311 -117185545 - B1_Mus1 SINE Alu 0 148 1 4 620 677 208 8 0 chr11 4659213 4659343 -117184513 + B1_Mur4 SINE Alu 9 139 -11 4 620 293 318 0 19 chr11 4659348 4659437 -117184419 + RSINE1 SINE B4 1 85 -207 4 620 648 0 0 0 chr11 4659437 4659509 -117184347 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 620 405 0 0 0 chr11 4659509 4659553 -117184303 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 620 274 318 61 35 chr11 4659583 4659697 -117184159 + PB1D9 SINE Alu 3 119 -1 4 620 272 358 67 0 chr11 4659703 4659837 -117184019 + B1_Mur1 SINE Alu 2 144 -5 4 620 408 293 17 0 chr11 4659723 4659839 -117184017 + ID_B1 SINE B4 104 221 -3 4 620 1612 41 0 5 chr11 4659856 4660050 -117183806 + B2_Mm1a SINE B2 1 193 0 4 620 429 76 30 0 chr11 4660058 4660124 -117183732 + L1Md_F2 LINE L1 6503 6570 -12 4 620 1143 66 0 0 chr11 4660137 4660274 -117183582 + B1_Mus2 SINE Alu 1 137 -10 4 620 627 14 0 0 chr11 4660274 4660346 -117183510 + (CAAAA)n Simple_repeat Simple_repeat 2 73 0 4 620 966 169 0 0 chr11 4661375 4661523 -117182333 + B1_Mur4 SINE Alu 2 149 -1 4 620 194 306 194 0 chr11 4662225 4662333 -117181523 + L3 LINE CR1 832 960 -3529 4 620 220 321 88 47 chr11 4662673 4662843 -117181013 - MIR3 SINE MIR -31 177 1 4 620 1052 142 0 0 chr11 4663983 4664131 -117179725 + B1_Mus1 SINE Alu 1 148 0 4 620 355 292 154 24 chr11 4664198 4664321 -117179535 - RSINE1 SINE B4 -17 148 10 4 620 1222 54 7 0 chr11 4665475 4665622 -117178234 + B1_Mus1 SINE Alu 1 148 0 4 620 206 121 0 0 chr11 4665622 4665655 -117178201 + (A)n Simple_repeat Simple_repeat 1 33 0 4 620 254 276 65 28 chr11 4665729 4665837 -117178019 + B3 SINE B2 104 215 -1 4 620 303 122 0 0 chr11 4666511 4666560 -117177296 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 620 438 110 146 0 chr11 4667644 4667726 -117176130 - BC1_Mm scRNA scRNA -58 94 1 4 620 609 52 0 0 chr11 4667956 4668033 -117175823 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 620 225 244 27 142 chr11 4668134 4668282 -117175574 - MLT1M LTR MaLR -475 197 67 4 620 1092 92 0 0 chr11 4671201 4671342 -117172514 + B1_Mus2 SINE Alu 5 145 -2 4 620 500 246 46 31 chr11 4672393 4672523 -117171333 + B1_Mur1 SINE Alu 17 148 -1 4 620 369 248 59 10 chr11 4672553 4672655 -117171201 + PB1D9 SINE Alu 14 120 0 4 620 265 230 120 13 chr11 4672656 4672731 -117171125 + ID4 SINE ID 1 83 0 4 620 251 298 32 29 chr11 4672765 4672888 -117170968 + B1_Mus2 SINE Alu 9 133 -14 4 620 1086 233 0 0 chr11 4674810 4675020 -117168836 - B3 SINE B2 -5 211 2 4 620 723 110 164 8 chr11 4675029 4675157 -117168699 + B1_Mur3 SINE Alu 2 149 0 4 620 3144 30 0 0 chr11 4675424 4675792 -117168064 - MT2_Mm LTR ERVL -125 368 1 4 620 256 242 21 133 chr11 4675792 4675835 -117168021 - ORR1A3-int LTR MaLR -1357 606 580 4 620 355 173 39 39 chr11 4675839 4675917 -117167939 - ORR1A3-int LTR MaLR -1333 630 553 4 620 1641 44 5 0 chr11 4675917 4676122 -117167734 - MERVL-int LTR ERVL -125 5360 5155 4 620 605 215 99 11 chr11 4676609 4676787 -117167069 + B3 SINE B2 2 191 -7 4 620 220 242 31 31 chr11 4677336 4677400 -117166456 - MIRb SINE MIR -43 225 162 4 620 280 180 0 39 chr11 4677434 4677486 -117166370 - B1_Mur2 SINE Alu -10 139 90 4 620 250 167 21 0 chr11 4677531 4677579 -117166277 - ID4 SINE ID -16 67 19 4 620 275 284 91 0 chr11 4677592 4677680 -117166176 - PB1D10 SINE Alu -21 96 1 4 620 396 211 0 0 chr11 4677739 4677810 -117166046 - B1_Mur4 SINE Alu -79 71 1 4 620 698 164 0 153 chr11 4677846 4677887 -117165969 + B3 SINE B2 3 40 -176 4 620 1177 55 0 0 chr11 4677887 4678033 -117165823 + B1_Mm SINE Alu 2 147 0 4 620 225 0 0 0 chr11 4678043 4678068 -117165788 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 4 620 698 164 0 153 chr11 4678068 4678159 -117165697 + B3 SINE B2 41 124 -92 4 620 1388 133 116 48 chr11 4678133 4678425 -117165431 + ORR1C1 LTR MaLR 65 376 -2 4 620 720 88 20 0 chr11 4678755 4678857 -117164999 - PB1D9 SINE Alu -16 104 1 4 620 508 217 158 0 chr11 4680924 4681044 -117162812 - ID_B1 SINE B4 -7 217 79 4 620 824 101 17 0 chr11 4681276 4681395 -117162461 - B1_Mm SINE Alu 0 147 27 4 620 530 210 0 0 chr11 4681461 4681561 -117162295 - PB1D10 SINE Alu -12 105 6 4 620 253 273 0 0 chr11 4681506 4681572 -117162284 - B4A SINE B4 -147 145 80 4 620 375 273 116 56 chr11 4682440 4682638 -117161218 + MIRc SINE MIR 40 249 -19 4 620 670 257 88 0 chr11 4683054 4683225 -117160631 + MLT1A0 LTR MaLR 180 365 0 4 620 230 335 114 26 chr11 4683390 4683538 -117160318 + MIRb SINE MIR 1 152 -116 4 620 708 299 89 5 chr11 4683538 4683740 -117160116 - ID_B1 SINE B4 -5 219 1 4 620 200 346 53 53 chr11 4683740 4683753 -117160103 + MIRc SINE MIR 153 165 -103 4 620 186 338 108 33 chr11 4684744 4684958 -117158898 - L2c LINE L2 -6 3381 3152 4 620 201 195 0 47 chr11 4685303 4685346 -117158510 + polypyrimidine Low_complexity Low_complexity 4 44 0 4 620 306 355 0 35 chr11 4685350 4685464 -117158392 - PB1D10 SINE Alu -6 111 2 5 620 1234 48 7 0 chr11 4685921 4686068 -117157788 + B1_Mus1 SINE Alu 1 148 0 5 620 491 245 1 9 chr11 4687821 4687937 -117155919 + PB1 SINE Alu 13 123 -4 5 620 831 156 21 7 chr11 4687941 4688083 -117155773 + B1_Mur2 SINE Alu 4 147 -2 5 620 486 0 0 0 chr11 4688719 4688773 -117155083 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 620 770 292 42 87 chr11 4688804 4689093 -117154763 - B4A SINE B4 -10 282 7 5 620 1175 184 19 19 chr11 4689105 4689316 -117154540 - B3 SINE B2 -5 211 1 5 620 210 239 22 0 chr11 4690002 4690048 -117153808 + B4A SINE B4 50 96 -196 5 620 1006 198 28 28 chr11 4690061 4690274 -117153582 - B3 SINE B2 -3 213 1 5 620 481 281 8 45 chr11 4690580 4690714 -117153142 + ID_B1 SINE B4 84 212 -12 5 620 231 227 75 83 chr11 4692291 4692411 -117151445 - MIRb SINE MIR -83 193 75 5 620 180 0 0 0 chr11 4692495 4692515 -117151341 + (CTG)n Simple_repeat Simple_repeat 2 21 0 5 620 949 99 149 36 chr11 4692515 4692683 -117151173 - B2_Mm2 SINE B2 -8 187 1 5 620 714 243 72 0 chr11 4693444 4693596 -117150260 - RSINE1 SINE B4 0 165 3 5 620 333 286 35 26 chr11 4693813 4693928 -117149928 - RSINE1 SINE B4 -7 158 43 5 620 460 277 71 21 chr11 4693957 4694097 -117149759 + B1F1 SINE Alu 1 147 -2 5 620 971 252 104 44 chr11 4694113 4694383 -117149473 + B4 SINE B4 7 292 0 5 620 204 315 21 32 chr11 4695153 4695248 -117148608 - L2a LINE L2 -89 3337 3244 5 620 464 248 90 0 chr11 4695791 4695924 -117147932 + B1F2 SINE Alu 5 149 0 5 620 2178 83 32 6 chr11 4696474 4696788 -117147068 - L1_Mus4 LINE L1 0 6636 6315 5 620 547 292 7 0 chr11 4697236 4697380 -117146476 + RSINE1 SINE B4 4 148 -17 5 620 249 299 45 0 chr11 4697402 4697469 -117146387 + PB1D10 SINE Alu 6 75 -42 5 620 191 36 0 35 chr11 4697488 4697517 -117146339 + (GGA)n Simple_repeat Simple_repeat 2 29 0 5 620 849 154 7 29 chr11 4698237 4698377 -117145479 + B1_Mur3 SINE Alu 1 137 -12 5 620 203 0 0 36 chr11 4698379 4698407 -117145449 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 620 507 234 10 2 chr11 4698573 4698693 -117145163 + B1F SINE Alu 3 122 -27 5 620 1536 251 138 8 chr11 4698777 4699247 -117144609 + MT2A LTR ERVL 3 533 0 5 620 447 244 168 30 chr11 4699270 4699401 -117144455 + B1_Mur1 SINE Alu 1 149 0 5 620 278 252 69 20 chr11 4700529 4700630 -117143226 + L1ME2z LINE L1 6339 6444 0 5 620 23 0 0 0 chr11 4700630 4700653 -117143203 + AT_rich Low_complexity Low_complexity 1 23 0 5 620 397 252 94 17 chr11 4701475 4701592 -117142264 + RSINE1 SINE B4 3 128 -37 5 620 837 151 19 82 chr11 4701683 4701842 -117142014 - B1_Mur4 SINE Alu 0 150 2 5 620 533 249 11 85 chr11 4702007 4702183 -117141673 - RSINE1 SINE B4 0 165 3 5 620 552 265 25 50 chr11 4702247 4702406 -117141450 - B3A SINE B2 -1 197 43 5 620 206 32 32 0 chr11 4702460 4702491 -117141365 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 620 1167 81 63 11 chr11 4702502 4702677 -117141179 - B2_Mm1t SINE B2 -7 186 3 5 620 1241 41 0 20 chr11 4702677 4702827 -117141029 - B1_Mus2 SINE Alu 0 147 1 5 620 216 0 0 0 chr11 4702847 4702871 -117140985 + (A)n Simple_repeat Simple_repeat 1 24 0 5 620 375 265 0 12 chr11 4704036 4704120 -117139736 + ID4 SINE ID 1 83 0 5 620 421 269 61 12 chr11 4704481 4704619 -117139237 + L1ME3B LINE L1 5462 5603 -741 5 620 536 230 75 48 chr11 4704596 4704824 -117139032 + L1ME3B LINE L1 5705 5938 -302 5 620 349 264 0 53 chr11 4704842 4704918 -117138938 + ID4_ SINE ID 9 80 -3 5 620 391 207 58 83 chr11 4704994 4705115 -117138741 + PB1D9 SINE Alu 2 119 -1 5 620 215 329 153 0 chr11 4705115 4705131 -117138725 + B4A SINE B4 87 244 -48 5 620 894 186 117 0 chr11 4705244 4705432 -117138424 + B3 SINE B2 1 210 -6 5 620 989 123 14 7 chr11 4705553 4705700 -117138156 - B1_Mur4 SINE Alu 0 150 3 5 620 377 161 0 0 chr11 4706008 4706070 -117137786 - ID4_ SINE ID -17 66 5 5 620 473 287 9 0 chr11 4706976 4707091 -117136765 - PB1D10 SINE Alu 0 117 2 5 620 423 218 35 0 chr11 4707093 4707180 -117136676 + PB1D10 SINE Alu 26 115 -2 5 620 308 276 11 54 chr11 4707182 4707274 -117136582 + B4 SINE B4 1 88 -204 5 620 1217 55 0 0 chr11 4707534 4707680 -117136176 + B1_Mus2 SINE Alu 2 147 0 5 620 31 0 0 0 chr11 4707680 4707711 -117136145 + AT_rich Low_complexity Low_complexity 1 31 0 5 620 373 285 62 62 chr11 4707777 4707938 -117135918 + B4A SINE B4 82 242 -50 5 620 251 28 0 27 chr11 4708009 4708046 -117135810 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 620 531 0 0 0 chr11 4708046 4708104 -117135752 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 620 558 282 34 74 chr11 4709041 4709127 -117134729 + ID SINE ID 8 86 -138 5 620 619 171 70 26 chr11 4709127 4709241 -117134615 + PB1D9 SINE Alu 2 120 0 5 620 590 208 0 0 chr11 4709373 4709474 -117134382 - RSINE1 SINE B4 -61 104 4 5 620 512 237 47 17 chr11 4709521 4709693 -117134163 - B3A SINE B2 -10 185 9 5 620 189 0 0 0 chr11 4709705 4709726 -117134130 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 5 620 562 165 31 10 chr11 4709726 4709824 -117134032 - B3 SINE B2 -16 200 101 5 620 462 196 383 0 chr11 4709822 4709937 -117133919 - B3 SINE B2 -6 210 52 5 620 293 189 27 13 chr11 4710132 4710207 -117133649 + B3 SINE B2 140 215 -1 5 620 989 97 15 0 chr11 4710226 4710360 -117133496 + B1_Mus1 SINE Alu 1 136 -12 5 620 477 0 0 0 chr11 4710360 4710413 -117133443 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 5 620 184 312 0 0 chr11 4710453 4710501 -117133355 + L3 LINE CR1 3495 3542 -947 5 620 799 158 262 0 chr11 4711255 4711419 -117132437 + B3 SINE B2 4 210 -6 5 620 1088 30 68 0 chr11 4711435 4711567 -117132289 + B1_Mm SINE Alu 2 142 -5 5 620 318 26 0 0 chr11 4711571 4711610 -117132246 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 620 1330 71 47 32 chr11 4711685 4711875 -117131981 + B2_Mm2 SINE B2 2 194 -1 5 620 1221 177 9 19 chr11 4711959 4712172 -117131684 + B3 SINE B2 3 213 -3 5 620 464 286 18 9 chr11 4712176 4712289 -117131567 + RSINE1 SINE B4 4 117 -48 5 620 1182 81 0 0 chr11 4712290 4712438 -117131418 + B1_Mus1 SINE Alu 1 148 0 5 620 684 254 0 0 chr11 4712593 4712719 -117131137 - B1_Mur1 SINE Alu -22 127 2 5 620 608 243 0 26 chr11 4712939 4713091 -117130765 - B1_Mur3 SINE Alu 0 149 2 5 620 442 292 98 39 chr11 4713099 4713302 -117130554 - B3 SINE B2 0 216 2 5 620 1219 62 0 0 chr11 4713786 4713932 -117129924 + B1_Mus2 SINE Alu 2 147 0 5 620 229 292 55 14 chr11 4714174 4714247 -117129609 + ID4_ SINE ID 8 83 0 5 620 643 133 168 0 chr11 4716401 4716514 -117127342 + B1_Mus1 SINE Alu 14 145 -3 5 620 419 310 148 43 chr11 4717096 4717258 -117126598 - ID_B1 SINE B4 -5 219 41 5 620 534 233 0 25 chr11 4717491 4717610 -117126246 + PB1D10 SINE Alu 2 117 0 5 621 243 0 0 0 chr11 4720065 4720092 -117123764 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 621 252 0 0 0 chr11 4720293 4720321 -117123535 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 621 1195 68 0 0 chr11 4720950 4721096 -117122760 + B1_Mus2 SINE Alu 1 146 -1 5 621 1845 52 4 9 chr11 4721296 4721529 -117122327 + L1_Mus2 LINE L1 6334 6565 -1 5 621 329 240 310 0 chr11 4721932 4722032 -117121824 + B4 SINE B4 5 135 -157 5 621 433 224 111 69 chr11 4722141 4722285 -117121571 + RSINE1 SINE B4 2 151 -14 5 621 235 161 36 0 chr11 4722308 4722364 -117121492 + GA-rich Low_complexity Low_complexity 1 58 0 5 621 334 329 52 46 chr11 4722425 4722554 -117121302 - RSINE1 SINE B4 -10 155 25 5 621 1119 87 125 23 chr11 4722554 4722730 -117121126 - B2_Mm2 SINE B2 -1 194 1 5 621 334 329 52 46 chr11 4722730 4722753 -117121103 - RSINE1 SINE B4 -141 24 2 5 621 880 81 15 3 chr11 4722763 4722890 -117120966 + B1_Mus2 SINE Alu 15 147 0 5 621 1272 34 0 0 chr11 4723498 4723644 -117120212 - B1_Mus2 SINE Alu 0 147 2 5 621 3698 36 7 0 chr11 4724297 4724735 -117119121 + L1Md_F2 LINE L1 6138 6578 -4 5 621 405 319 78 36 chr11 4724914 4725080 -117118776 + B4 SINE B4 47 219 -73 5 621 595 218 113 0 chr11 4724961 4725085 -117118771 + B1_Mus1 SINE Alu 11 148 0 5 621 324 304 121 21 chr11 4725151 4725226 -117118630 + RSINE1 SINE B4 3 87 -78 5 621 1912 94 99 20 chr11 4725226 4725529 -117118327 + ORR1A2 LTR MaLR 1 327 0 5 621 324 304 121 21 chr11 4725529 4725594 -117118262 + RSINE1 SINE B4 88 157 -8 5 621 34 0 0 22 chr11 4725597 4725627 -117118229 + AT_rich Low_complexity Low_complexity 1 30 0 5 621 1156 88 0 0 chr11 4725627 4725775 -117118081 + B1_Mus1 SINE Alu 1 148 0 5 621 34 0 0 22 chr11 4725775 4725789 -117118067 + AT_rich Low_complexity Low_complexity 1 14 0 5 621 355 308 0 0 chr11 4725821 4725899 -117117957 + PB1 SINE Alu 48 125 -2 5 621 189 0 0 0 chr11 4725937 4725958 -117117898 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 621 271 263 0 0 chr11 4725959 4726016 -117117840 + PB1D7 SINE Alu 2 58 -62 6 621 296 265 43 14 chr11 4727000 4727069 -117116787 + RSINE1 SINE B4 6 76 -89 6 621 333 0 0 0 chr11 4727234 4727271 -117116585 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 621 353 261 32 64 chr11 4727299 4727393 -117116463 + PB1D10 SINE Alu 1 91 -26 6 621 256 313 0 0 chr11 4727403 4727470 -117116386 - MER105 DNA DNA -109 95 29 6 621 492 299 93 29 chr11 4727535 4727707 -117116149 + MIR SINE MIR 80 262 0 6 621 440 257 263 70 chr11 4727840 4728125 -117115731 - L2b LINE L2 -2 3424 3046 6 621 274 291 115 11 chr11 4728410 4728497 -117115359 + PB1D10 SINE Alu 1 96 -21 6 621 440 289 44 50 chr11 4728592 4728752 -117115104 - RSINE1 SINE B4 -2 163 5 6 621 499 205 0 0 chr11 4728825 4728908 -117114948 - RSINE1 SINE B4 -36 129 47 6 621 958 56 8 0 chr11 4728920 4729045 -117114811 + B1_Mus2 SINE Alu 13 138 -9 6 621 724 257 10 36 chr11 4729067 4729261 -117114595 + B3 SINE B2 27 215 -1 6 621 180 0 0 0 chr11 4729784 4729804 -117114052 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6 621 1513 48 37 0 chr11 4730681 4730869 -117112987 + B2_Mm2 SINE B2 1 195 0 6 621 1193 55 7 0 chr11 4730872 4731018 -117112838 + B1_Mus2 SINE Alu 1 147 0 6 621 21 0 0 0 chr11 4731160 4731181 -117112675 + AT_rich Low_complexity Low_complexity 1 21 0 6 621 369 262 12 23 chr11 4731541 4731627 -117112229 + B1_Mur3 SINE Alu 4 88 -61 6 621 261 0 0 0 chr11 4731632 4731661 -117112195 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 621 189 0 0 0 chr11 4731670 4731691 -117112165 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 621 459 0 0 0 chr11 4731691 4731741 -117112115 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 621 437 280 53 8 chr11 4731779 4731912 -117111944 + B1F2 SINE Alu 11 149 0 6 621 243 203 194 42 chr11 4731941 4732013 -117111843 + ID4_ SINE ID 1 83 0 6 621 406 296 35 101 chr11 4732358 4732379 -117111477 + B4 SINE B4 64 73 -219 6 621 866 156 7 26 chr11 4732379 4732530 -117111326 + B1_Mur4 SINE Alu 1 148 -2 6 621 435 119 0 0 chr11 4732929 4732996 -117110860 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 621 198 0 0 0 chr11 4733689 4733711 -117110145 + (A)n Simple_repeat Simple_repeat 1 22 0 6 621 215 274 99 59 chr11 4733838 4733939 -117109917 + MIRm SINE MIR 78 182 -94 6 621 855 134 16 0 chr11 4734208 4734335 -117109521 + B3 SINE B2 2 130 -86 6 621 357 259 12 0 chr11 4734399 4734480 -117109376 + ID_B1 SINE B4 143 224 0 6 621 406 225 59 59 chr11 4734695 4734813 -117109043 + PB1D7 SINE Alu 1 118 -2 6 621 602 206 59 78 chr11 4734815 4734968 -117108888 + B4 SINE B4 72 221 -71 6 621 1128 58 0 0 chr11 4734834 4734973 -117108883 + B1_Mus2 SINE Alu 9 147 0 6 621 719 252 53 7 chr11 4735074 4735226 -117108630 - B3 SINE B2 -57 159 1 6 621 248 373 0 13 chr11 4735361 4735437 -117108419 + PB1D10 SINE Alu 13 87 -30 6 621 226 296 95 40 chr11 4735461 4735535 -117108321 + ID4 SINE ID 6 83 0 6 621 2382 207 53 23 chr11 4735547 4736124 -117107732 + RMER1B Other Other 56 1066 0 6 621 1516 58 11 5 chr11 4736316 4736506 -117107350 - B2_Mm2 SINE B2 -4 191 1 6 621 1180 75 0 0 chr11 4737029 4737175 -117106681 + B1_Mus1 SINE Alu 3 148 0 6 621 263 292 15 0 chr11 4737320 4737385 -117106471 + B4A SINE B4 82 147 -145 6 621 469 260 19 0 chr11 4737334 4737438 -117106418 + PB1D10 SINE Alu 12 117 0 6 621 186 43 0 0 chr11 4737749 4737772 -117106084 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 621 484 200 10 69 chr11 4737773 4737875 -117105981 - PB1 SINE Alu 0 127 32 6 621 255 260 80 11 chr11 4738277 4738366 -117105490 + ID4 SINE ID 4 98 -54 6 621 253 307 39 10 chr11 4739323 4739425 -117104431 + ID_B1 SINE B4 112 216 -8 6 621 306 259 24 12 chr11 4739403 4739485 -117104371 + RSINE1 SINE B4 53 135 -30 6 621 26 30 0 0 chr11 4739511 4739544 -117104312 + AT_rich Low_complexity Low_complexity 1 33 0 6 621 1313 14 0 0 chr11 4739549 4739695 -117104161 + B1_Mm SINE Alu 1 146 -1 6 621 1172 87 51 51 chr11 4739728 4739923 -117103933 + B2_Mm2 SINE B2 1 195 0 6 621 936 129 20 20 chr11 4739937 4740087 -117103769 + B1_Mur4 SINE Alu 1 150 0 6 621 387 333 37 12 chr11 4741425 4741589 -117102267 - MIRc SINE MIR -84 184 17 6 621 357 215 25 12 chr11 4741593 4741673 -117102183 + MER5A1 DNA MER1_type 1 81 -85 6 621 392 245 151 0 chr11 4741667 4741773 -117102083 + B1_Mur4 SINE Alu 19 140 -10 6 621 1397 64 21 11 chr11 4741817 4742006 -117101850 + B2_Mm2 SINE B2 2 192 -3 6 621 1210 55 7 0 chr11 4742010 4742156 -117101700 + B1_Mus2 SINE Alu 1 147 0 6 621 396 125 0 0 chr11 4742294 4742358 -117101498 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 6 621 349 325 108 38 chr11 4742384 4742414 -117101442 + ID_B1 SINE B4 57 213 -11 6 621 469 262 139 23 chr11 4742414 4742529 -117101327 + B1F1 SINE Alu 6 138 -11 6 621 1219 55 0 0 chr11 4742529 4742675 -117101181 + B1_Mus1 SINE Alu 3 148 0 6 621 349 325 108 38 chr11 4742675 4742686 -117101170 + ID_B1 SINE B4 214 224 0 6 621 770 164 7 0 chr11 4742691 4742837 -117101019 + GA-rich Low_complexity Low_complexity 2 148 0 6 621 241 341 24 0 chr11 4742860 4742942 -117100914 + MER20 DNA MER1_type 133 216 -3 6 621 597 253 30 96 chr11 4743000 4743166 -117100690 - B3A SINE B2 -1 197 43 6 621 503 192 89 111 chr11 4743179 4743190 -117100666 - B1_Mur2 SINE Alu -2 147 137 6 621 234 0 0 0 chr11 4743190 4743216 -117100640 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 6 621 503 192 89 111 chr11 4743216 4743339 -117100517 - B1_Mur2 SINE Alu -13 136 16 6 621 215 100 0 111 chr11 4743348 4743393 -117100463 - B3 SINE B2 -173 43 4 6 621 528 289 6 90 chr11 4743393 4743546 -117100310 + ID_B1 SINE B4 85 224 0 6 621 724 223 83 0 chr11 4743609 4743766 -117100090 - B3 SINE B2 -44 172 3 6 621 326 184 128 0 chr11 4743768 4743877 -117099979 - L1M4b LINE L1 -4193 3141 3019 6 621 617 198 303 44 chr11 4743916 4744329 -117099527 - L1M4b LINE L1 -4581 2753 2234 6 621 650 192 112 0 chr11 4744330 4744455 -117099401 - B1_Mus2 SINE Alu 0 147 9 6 621 1356 89 21 16 chr11 4744491 4744684 -117099172 - B2_Mm2 SINE B2 0 195 2 6 621 618 233 61 15 chr11 4744686 4744882 -117098974 - L1M4b LINE L1 -5629 1705 1501 6 621 255 31 0 0 chr11 4744899 4744931 -117098925 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 621 634 286 29 0 chr11 4744983 4745123 -117098733 - B4A SINE B4 -11 281 138 6 621 387 223 0 64 chr11 4745279 4745352 -117098504 - L1M4b LINE L1 -5899 1435 1369 6 621 1373 89 16 10 chr11 4745352 4745375 -117098481 - B2_Mm2 SINE B2 -2 193 172 6 621 1542 48 16 5 chr11 4745375 4745564 -117098292 + B2_Mm1a SINE B2 1 191 -2 6 621 1373 89 16 10 chr11 4745564 4745732 -117098124 - B2_Mm2 SINE B2 -24 171 1 6 621 387 223 0 64 chr11 4745732 4745768 -117098088 - L1M4b LINE L1 -5966 1368 1333 6 621 283 262 27 13 chr11 4745788 4745885 -117097971 - PB1D10 SINE Alu -6 114 10 6 621 235 273 32 74 chr11 4745904 4745999 -117097857 - L1M4b LINE L1 -6044 1290 1200 6 621 333 258 54 0 chr11 4746269 4746362 -117097494 - L1M4b LINE L1 -6516 818 721 6 621 1079 49 7 27 chr11 4746809 4746955 -117096901 - B1_Mus2 SINE Alu 0 147 5 6 621 238 287 55 44 chr11 4747114 4747205 -117096651 + MER58B DNA MER1_type 250 341 0 6 621 1285 287 157 43 chr11 4747402 4747604 -117096252 - MER21B LTR ERV1 -207 656 441 6 621 1208 56 0 0 chr11 4747604 4747747 -117096109 - B1_Mus1 SINE Alu -5 143 1 6 621 1285 287 157 43 chr11 4747747 4748119 -117095737 - MER21B LTR ERV1 -423 440 17 6 621 310 236 0 0 chr11 4748230 4748285 -117095571 + ID4_ SINE ID 2 56 -27 6 621 330 80 0 0 chr11 4748288 4748338 -117095518 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 621 183 290 16 31 chr11 4750014 4750078 -117093778 + MIR SINE MIR 149 211 -51 6 621 204 67 0 0 chr11 4750080 4750110 -117093746 + (T)n Simple_repeat Simple_repeat 1 30 0 6 621 1115 68 0 13 chr11 4750110 4750259 -117093597 - B1_Mus1 SINE Alu 0 148 2 6 621 191 32 65 0 chr11 4750286 4750317 -117093539 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 621 2115 142 44 28 chr11 4750446 4750808 -117093048 - ORR1C2 LTR MaLR -16 368 1 6 621 612 305 70 0 chr11 4750818 4751018 -117092838 - B3 SINE B2 0 216 3 6 621 300 235 74 0 chr11 4751032 4751113 -117092743 - PB1 SINE Alu 0 127 41 6 621 1174 68 0 0 chr11 4751131 4751278 -117092578 + B1_Mm SINE Alu 1 147 0 6 621 512 132 272 0 chr11 4751309 4751423 -117092433 + B1_Mur3 SINE Alu 5 149 0 6 621 1523 53 21 0 chr11 4751443 4751632 -117092224 + B2_Mm1t SINE B2 1 193 0 6 621 504 264 20 20 chr11 4751764 4751911 -117091945 - B1_Mm SINE Alu 0 147 1 6 621 225 111 0 0 chr11 4752819 4752855 -117091001 + B3A SINE B2 1 36 -162 6 621 524 84 0 27 chr11 4752861 4752934 -117090922 + tRNA-Asp-GAY tRNA tRNA 1 71 -4 6 621 1165 82 0 0 chr11 4752947 4753093 -117090763 + B1_Mus2 SINE Alu 2 147 0 6 621 557 217 43 128 chr11 4753127 4753274 -117090582 + B3A SINE B2 27 165 -33 6 621 321 26 0 0 chr11 4753274 4753312 -117090544 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 621 325 217 43 128 chr11 4753312 4753328 -117090528 + B2_Mm2 SINE B2 163 176 -19 6 621 213 39 0 0 chr11 4753377 4753403 -117090453 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 621 1248 41 0 0 chr11 4753426 4753572 -117090284 + B1_Mus1 SINE Alu 3 148 0 6 621 216 0 0 0 chr11 4753572 4753596 -117090260 + (A)n Simple_repeat Simple_repeat 1 24 0 6 621 913 96 7 56 chr11 4753603 4753747 -117090109 + B2_Mm2 SINE B2 5 141 -54 6 621 468 0 0 0 chr11 4753747 4753799 -117090057 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 7 621 690 199 72 60 chr11 4753799 4753820 -117090036 + B3 SINE B2 151 172 -44 7 621 371 164 0 16 chr11 4753820 4753861 -117089995 + B1_Mur3 SINE Alu 74 134 -15 7 621 732 73 8 0 chr11 4753902 4754008 -117089848 - B1_Mm SINE Alu -1 119 6 7 621 296 266 14 41 chr11 4753914 4754059 -117089797 - ORR1B1-int LTR MaLR -763 746 606 7 621 1453 58 26 5 chr11 4754064 4754253 -117089603 - B2_Mm1t SINE B2 0 193 1 7 621 515 249 249 0 chr11 4754285 4754450 -117089406 + ID_B1 SINE B4 16 221 -3 7 621 312 70 0 0 chr11 4754668 4754711 -117089145 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 621 1079 80 0 0 chr11 4754742 4754879 -117088977 + B1_Mus1 SINE Alu 3 139 -9 7 621 270 73 0 0 chr11 4754882 4754923 -117088933 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 621 553 282 27 0 chr11 4754945 4755094 -117088762 - B3 SINE B2 -61 155 3 7 621 1152 88 0 0 chr11 4755118 4755265 -117088591 - B1_Mus1 SINE Alu 0 148 2 7 621 205 175 0 0 chr11 4755281 4755321 -117088535 + (TTG)n Simple_repeat Simple_repeat 3 42 0 7 621 759 325 73 43 chr11 4755340 4755736 -117088120 + MLT1E1A LTR MaLR 270 677 -3 7 621 186 374 0 46 chr11 4755990 4756077 -117087779 + L4 LINE RTE 1740 1822 -207 7 621 449 190 280 0 chr11 4756202 4756302 -117087554 + B1_Mus1 SINE Alu 5 132 -16 7 621 321 320 98 8 chr11 4756304 4756427 -117087429 - B1_Mus2 SINE Alu -13 134 1 7 621 795 226 66 18 chr11 4756427 4756491 -117087365 - ID_B1 SINE B4 -132 92 21 7 621 194 0 0 37 chr11 4756557 4756584 -117087272 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 621 1232 48 0 0 chr11 4756584 4756722 -117087134 - B1_Mm SINE Alu -8 139 2 7 621 195 69 0 0 chr11 4756725 4756754 -117087102 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 621 1037 69 0 0 chr11 4756754 4756884 -117086972 - B1_Mus1 SINE Alu -9 139 10 7 621 968 82 215 0 chr11 4756944 4757102 -117086754 + B2_Mm1t SINE B2 2 193 0 7 621 1328 61 0 0 chr11 4757112 4757276 -117086580 + B2_Mm2 SINE B2 1 164 -31 7 621 234 0 0 0 chr11 4757276 4757302 -117086554 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 7 621 245 272 118 11 chr11 4757368 4757461 -117086395 - L1MC4a LINE L1 -48 7834 7732 7 621 253 333 18 0 chr11 4757465 4757576 -117086280 + PB1 SINE Alu 1 113 -14 7 621 987 322 26 24 chr11 4757676 4758093 -117085763 - BGLII_B LTR ERVK -17 424 7 7 621 306 0 0 0 chr11 4758106 4758140 -117085716 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 7 621 1415 205 169 26 chr11 4758191 4758541 -117085315 + MTD LTR MaLR 6 405 -14 7 621 421 235 42 55 chr11 4758570 4758739 -117085117 + 7SLRNA srpRNA srpRNA 149 311 0 7 621 217 154 75 19 chr11 4758744 4758797 -117085059 + PB1D10 SINE Alu 42 97 -20 7 621 221 209 0 15 chr11 4758801 4758869 -117084987 + GA-rich Low_complexity Low_complexity 3 69 0 7 621 260 282 26 0 chr11 4759424 4759502 -117084354 + BC1_Mm scRNA scRNA 18 97 -55 7 621 231 114 0 0 chr11 4759545 4759589 -117084267 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 7 621 1215 61 0 0 chr11 4759589 4759736 -117084120 - B1_Mus2 SINE Alu 0 147 1 7 621 277 279 41 8 chr11 4759771 4759894 -117083962 - L1MC4a LINE L1 -201 7681 7555 7 621 298 231 101 92 chr11 4760300 4760419 -117083437 - PB1D9 SINE Alu 0 120 1 7 621 2389 80 41 0 chr11 4760481 4760795 -117083061 + ORR1A2 LTR MaLR 1 327 0 7 621 1038 103 0 40 chr11 4760831 4760983 -117082873 + B1_Mus1 SINE Alu 2 147 -1 7 621 384 22 0 0 chr11 4760995 4761040 -117082816 + (A)n Simple_repeat Simple_repeat 1 45 0 7 621 298 283 71 0 chr11 4761045 4761144 -117082712 + Tigger7 DNA MER2_type 42 147 -2344 7 621 213 121 0 0 chr11 4761144 4761177 -117082679 + (TCCTG)n Simple_repeat Simple_repeat 3 35 0 7 621 218 234 250 0 chr11 4761365 4761429 -117082427 - PB1D10 SINE Alu -19 98 19 7 621 422 259 28 90 chr11 4761527 4761671 -117082185 + B4A SINE B4 16 150 -142 7 621 2355 164 52 0 chr11 4761728 4762167 -117081689 - RMER4A LTR ERVK -4 462 1 7 621 666 0 0 0 chr11 4762197 4762271 -117081585 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 621 308 285 107 76 chr11 4762290 4762514 -117081342 - MLT1C LTR MaLR -68 399 169 7 621 607 180 211 131 chr11 4762522 4762704 -117081152 - ORR1D1 LTR MaLR -16 358 150 7 621 1170 105 58 52 chr11 4762704 4762895 -117080961 - B2_Mm2 SINE B2 -3 192 1 7 621 607 204 195 118 chr11 4762895 4762980 -117080876 - ORR1D1 LTR MaLR -218 152 68 7 621 1133 214 38 29 chr11 4762989 4763337 -117080519 - RMER10A LTR ERVL -10 388 3 7 621 770 185 0 0 chr11 4763339 4763469 -117080387 - B1_Mur4 SINE Alu -19 131 2 7 621 576 156 10 0 chr11 4763469 4763565 -117080291 - ORR1D1 LTR MaLR -273 101 5 7 621 406 287 16 32 chr11 4763764 4763890 -117079966 - B1F SINE Alu 0 149 26 7 621 425 103 0 0 chr11 4763949 4764007 -117079849 + B1_Mur4 SINE Alu 46 103 -47 7 621 445 277 9 9 chr11 4764046 4764159 -117079697 + PB1D10 SINE Alu 1 113 -4 7 621 586 139 25 42 chr11 4764167 4764287 -117079569 + PB1D9 SINE Alu 1 118 -2 7 621 447 271 12 107 chr11 4764326 4764495 -117079361 + RSINE1 SINE B4 13 165 0 7 621 477 0 0 0 chr11 4764500 4764553 -117079303 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 621 1707 21 0 0 chr11 4764590 4764780 -117079076 + B2_Mm1a SINE B2 3 192 -1 7 621 257 163 23 0 chr11 4764786 4764829 -117079027 - MLT1C LTR MaLR -379 88 45 7 621 258 30 0 0 chr11 4765588 4765604 -117078252 + (T)n Simple_repeat Simple_repeat 1 16 0 7 621 1214 27 0 26 chr11 4765604 4765755 -117078101 - B1_Mm SINE Alu 0 147 1 7 621 258 30 0 0 chr11 4765755 4765771 -117078085 + (T)n Simple_repeat Simple_repeat 1 16 0 7 621 282 193 0 0 chr11 4766688 4766745 -117077111 + GA-rich Low_complexity Low_complexity 3 59 0 7 621 210 37 0 0 chr11 4766790 4766817 -117077039 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 621 227 297 15 15 chr11 4767129 4767194 -117076662 - ID4_ SINE ID -9 74 10 7 621 4999 43 3 0 chr11 4767194 4767779 -117076077 - LTRIS_Mus LTR ERV1 0 587 1 7 621 410 244 40 16 chr11 4767800 4767925 -117075931 - B1F SINE Alu -1 148 21 7 621 2444 79 3 0 chr11 4767925 4768242 -117075614 + ORR1A3 LTR MaLR 1 318 -8 7 621 654 314 165 28 chr11 4768255 4768582 -117075274 + MLT1F LTR MaLR 45 416 -132 7 621 535 129 20 61 chr11 4768569 4768649 -117075207 + B1_Mus2 SINE Alu 53 134 -13 7 621 934 84 7 7 chr11 4768649 4768792 -117075064 + (GGAGA)n Simple_repeat Simple_repeat 1 143 0 7 621 535 129 20 61 chr11 4768792 4768810 -117075046 + B1_Mus2 SINE Alu 135 147 0 7 621 607 219 13 70 chr11 4768909 4769066 -117074790 + B1F SINE Alu 2 149 0 7 621 580 86 0 52 chr11 4769115 4769228 -117074628 - MT-int LTR MaLR -366 732 659 7 621 231 61 0 0 chr11 4769362 4769395 -117074461 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 7 621 1393 75 16 0 chr11 4769494 4769681 -117074175 - B2_Mm1t SINE B2 -3 190 1 7 621 207 125 0 0 chr11 4769715 4769755 -117074101 + (T)n Simple_repeat Simple_repeat 1 40 0 7 621 506 161 21 28 chr11 4769755 4769896 -117073960 - RMER17C LTR ERVK -135 275 136 7 621 217 157 57 0 chr11 4769935 4770005 -117073851 + (CAGAGA)n Simple_repeat Simple_repeat 4 77 0 7 621 545 222 126 105 chr11 4770010 4770201 -117073655 - B3A SINE B2 -3 195 1 7 621 942 148 0 20 chr11 4770208 4770360 -117073496 - B1_Mur4 SINE Alu -1 149 1 7 621 1467 74 26 0 chr11 4770379 4770569 -117073287 - B2_Mm2 SINE B2 0 195 1 7 621 886 129 14 28 chr11 4770595 4770738 -117073118 - B2_Mm1t SINE B2 -26 167 27 7 621 1261 41 0 0 chr11 4770754 4770900 -117072956 - B1_Mm SINE Alu 0 147 2 7 621 290 269 98 15 chr11 4771014 4771146 -117072710 + MER113 DNA MER1_type 302 444 -77 7 621 262 314 0 0 chr11 4771154 4771256 -117072600 + (CAG)n Simple_repeat Simple_repeat 3 104 0 7 621 384 77 0 0 chr11 4771256 4771308 -117072548 + 4.5SRNA scRNA scRNA 40 91 -3 7 621 1101 77 0 0 chr11 4771308 4771451 -117072405 + B1_Mus1 SINE Alu 2 144 -4 7 621 285 51 0 0 chr11 4771453 4771492 -117072364 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 621 868 206 54 0 chr11 4771503 4771707 -117072149 + B3 SINE B2 2 216 0 7 621 1591 195 70 28 chr11 4771731 4772090 -117071766 - ORR1D1 LTR MaLR 0 374 1 7 621 526 208 157 26 chr11 4772106 4772132 -117071724 + B4 SINE B4 3 30 -262 7 621 2253 81 57 70 chr11 4772132 4772471 -117071385 + RLTR8 LTR ERVK 1 335 -30 7 621 699 12 0 0 chr11 4772471 4772551 -117071305 + (TC)n Simple_repeat Simple_repeat 1 80 0 7 621 2253 81 57 70 chr11 4772551 4772581 -117071275 + RLTR8 LTR ERVK 336 365 0 7 621 526 208 157 26 chr11 4772581 4772707 -117071149 + B4 SINE B4 31 175 -117 7 621 245 29 0 29 chr11 4773124 4773159 -117070697 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 621 1037 46 45 8 chr11 4773159 4773291 -117070565 - B1_Mm SINE Alu -10 137 1 7 621 426 265 107 29 chr11 4773379 4773519 -117070337 + B3A SINE B2 3 153 -45 7 621 245 356 33 33 chr11 4774221 4774372 -117069484 - MT2B LTR ERVL -284 317 167 7 621 272 283 210 10 chr11 4774274 4774374 -117069482 - PB1D9 SINE Alu 0 120 1 7 621 267 256 20 122 chr11 4775223 4775321 -117068535 - ID SINE ID -135 89 2 7 621 408 240 38 48 chr11 4775422 4775527 -117068329 + MT2B LTR ERVL 161 264 -337 7 621 782 141 70 0 chr11 4775433 4775561 -117068295 + B1_Mus2 SINE Alu 11 147 0 7 621 586 232 72 7 chr11 4775581 4775720 -117068136 + B1_Mur2 SINE Alu 2 149 0 8 621 447 188 170 64 chr11 4775730 4775918 -117067938 + B3 SINE B2 2 209 -7 8 621 386 258 125 29 chr11 4775956 4776092 -117067764 - RSINE1 SINE B4 -2 163 15 8 621 1214 62 0 0 chr11 4776136 4776282 -117067574 - B1_Mus2 SINE Alu 0 147 2 8 621 581 193 171 83 chr11 4776287 4776468 -117067388 - B3A SINE B2 0 198 2 8 621 221 229 0 0 chr11 4776478 4776526 -117067330 - MIR SINE MIR -107 155 108 8 621 287 233 58 38 chr11 4776609 4776726 -117067130 + MIRc SINE MIR 118 238 -30 8 621 1486 38 43 0 chr11 4776990 4777174 -117066682 + B2_Mm1a SINE B2 2 193 0 8 621 360 278 72 0 chr11 4777229 4777326 -117066530 + PB1D10 SINE Alu 1 104 -13 8 621 1348 68 20 25 chr11 4777355 4777375 -117066481 - B2_Mm2 SINE B2 0 195 172 8 621 1182 68 0 20 chr11 4777375 4777526 -117066330 - B1_Mus1 SINE Alu 0 148 1 8 621 1352 68 20 25 chr11 4777526 4777701 -117066155 - B2_Mm2 SINE B2 -24 171 2 8 621 403 217 0 28 chr11 4777820 4777891 -117065965 - ID4 SINE ID -14 69 1 8 621 1183 116 16 11 chr11 4778345 4778536 -117065320 - B2_Mm1t SINE B2 0 193 2 8 621 622 244 119 6 chr11 4778570 4778747 -117065109 - B3A SINE B2 0 198 2 8 621 492 107 131 0 chr11 4778765 4778849 -117065007 - B2_Mm2 SINE B2 -9 186 92 8 621 414 223 214 0 chr11 4778862 4778974 -117064882 - B1_Mur1 SINE Alu -12 137 2 8 621 560 227 108 18 chr11 4779002 4779168 -117064688 - B3A SINE B2 -17 181 1 8 621 455 242 203 24 chr11 4779179 4779302 -117064554 - B1_Mur2 SINE Alu -1 148 4 8 621 365 129 177 0 chr11 4779335 4779397 -117064459 - ID_B1 SINE B4 -6 218 146 8 621 217 237 240 31 chr11 4779397 4779425 -117064431 - PB1D10 SINE Alu 0 100 2 8 621 562 297 27 46 chr11 4779459 4779678 -117064178 + B4A SINE B4 20 234 -58 8 621 279 0 0 0 chr11 4779715 4779746 -117064110 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 621 748 132 6 44 chr11 4779746 4779928 -117063928 + CT-rich Low_complexity Low_complexity 2 176 0 8 621 180 0 0 0 chr11 4779933 4779953 -117063903 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 621 337 266 161 0 chr11 4779977 4780101 -117063755 + B1F SINE Alu 1 144 -5 8 621 398 259 72 27 chr11 4780105 4780216 -117063640 - MER5A DNA MER1_type -57 132 17 8 621 945 165 220 0 chr11 4780321 4780503 -117063353 - URR1A DNA MER1_type 0 226 5 8 621 634 289 89 19 chr11 4780536 4780807 -117063049 + B4A SINE B4 3 292 0 8 621 510 190 0 0 chr11 4780847 4780963 -117062893 + (CA)n Simple_repeat Simple_repeat 1 116 0 8 621 296 288 14 0 chr11 4780987 4781060 -117062796 + ID4_ SINE ID 9 82 -1 8 621 191 152 22 0 chr11 4781374 4781420 -117062436 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 8 621 898 225 248 77 chr11 4781529 4781595 -117062261 - ORR1C1 LTR MaLR 0 378 325 8 621 1034 141 0 13 chr11 4781595 4781746 -117062110 - B1_Mur3 SINE Alu 0 149 1 8 621 898 225 248 77 chr11 4781746 4782002 -117061854 - ORR1C1 LTR MaLR -54 324 1 8 621 290 320 48 0 chr11 4782059 4782162 -117061694 - BC1_Mm scRNA scRNA -37 115 8 8 621 372 174 402 0 chr11 4782279 4782381 -117061475 + B3A SINE B2 2 144 -72 8 621 1068 230 10 0 chr11 4782545 4782745 -117061111 + B3 SINE B2 14 215 -1 8 621 264 122 0 0 chr11 4783639 4783680 -117060176 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 621 450 191 36 0 chr11 4784427 4784511 -117059345 - PB1D7 SINE Alu -6 114 28 8 621 773 154 0 0 chr11 4784534 4784657 -117059199 - B1_Mus2 SINE Alu -2 145 23 8 621 800 142 14 47 chr11 4784657 4784805 -117059051 - URR1A DNA MER1_type 0 226 84 8 621 353 325 24 16 chr11 4785062 4785187 -117058669 - B4A SINE B4 -165 127 2 8 621 222 267 118 13 chr11 4785330 4785406 -117058450 + L2c LINE L2 3248 3331 -56 8 621 922 222 71 0 chr11 4785458 4785656 -117058200 + B3 SINE B2 1 212 -4 8 621 768 265 14 83 chr11 4785697 4785915 -117057941 + B3 SINE B2 14 216 0 8 621 886 146 58 0 chr11 4785925 4786062 -117057794 - B1_Mur4 SINE Alu -5 145 1 8 621 699 189 76 0 chr11 4786088 4786220 -117057636 + B1F SINE Alu 8 149 0 8 621 1181 34 0 52 chr11 4786223 4786378 -117057478 + B1_Mm SINE Alu 1 147 0 8 621 182 105 26 0 chr11 4786379 4786417 -117057439 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 621 545 219 117 0 chr11 4786656 4786784 -117057072 + B1_Mur3 SINE Alu 1 143 -6 8 621 1298 20 0 20 chr11 4786815 4786966 -117056890 + B1_Mus1 SINE Alu 1 148 0 8 621 647 319 103 37 chr11 4787099 4787447 -117056409 - MLT1C LTR MaLR -47 420 50 8 621 520 165 398 19 chr11 4787752 4787913 -117055943 - ID_B1 SINE B4 0 224 3 8 621 314 272 141 0 chr11 4787920 4788012 -117055844 - PB1 SINE Alu -2 125 21 8 621 1579 57 0 0 chr11 4788049 4788242 -117055614 - B2_Mm1a SINE B2 0 193 1 8 621 234 247 77 13 chr11 4788318 4788396 -117055460 - ID2 SINE ID 0 83 1 8 621 604 195 98 0 chr11 4790718 4790841 -117053015 + RSINE1 SINE B4 3 137 -28 8 621 215 292 146 81 chr11 4790853 4790976 -117052880 - L2 LINE L2 -965 2454 2324 8 621 324 0 0 0 chr11 4791173 4791209 -117052647 + (T)n Simple_repeat Simple_repeat 1 36 0 8 621 372 226 53 11 chr11 4791667 4791761 -117052095 - PB1D10 SINE Alu -8 109 12 8 621 244 219 61 30 chr11 4792154 4792220 -117051636 + MER5A1 DNA MER1_type 1 68 -98 8 621 730 257 40 23 chr11 4792321 4792496 -117051360 + B3A SINE B2 3 180 -18 8 621 228 316 38 38 chr11 4792686 4792765 -117051091 - ID4 SINE ID -3 80 2 8 621 243 361 0 0 chr11 4792841 4792913 -117050943 - ID4 SINE ID -2 81 10 8 621 23 0 0 0 chr11 4793617 4793640 -117050216 + AT_rich Low_complexity Low_complexity 1 23 0 8 621 1168 56 7 0 chr11 4794591 4794734 -117049122 + B1_Mus1 SINE Alu 5 148 0 8 621 1635 26 11 0 chr11 4794738 4794927 -117048929 + B2_Mm1a SINE B2 2 192 -1 8 621 378 200 154 17 chr11 4794943 4795060 -117048796 + B1_Mur1 SINE Alu 1 133 -16 8 621 332 311 58 8 chr11 4796058 4796178 -117047678 - B1F1 SINE Alu -23 126 1 8 621 675 298 18 22 chr11 4796202 4796425 -117047431 - ID_B1 SINE B4 -2 222 1 8 621 614 208 257 18 chr11 4796629 4796800 -117047056 - B3 SINE B2 -1 215 4 8 621 532 186 0 67 chr11 4796897 4797001 -117046855 - B1_Mur2 SINE Alu -51 98 2 8 621 315 292 42 0 chr11 4797024 4797120 -117046736 + B1F SINE Alu 12 113 -4 8 621 375 279 121 48 chr11 4797443 4797458 -117046398 - B4A SINE B4 -56 236 180 8 621 626 178 16 41 chr11 4797458 4797581 -117046275 - PB1D9 SINE Alu 0 120 1 8 621 375 279 121 48 chr11 4797581 4797609 -117046247 - B4A SINE B4 -56 179 59 8 621 272 306 78 31 chr11 4797689 4797817 -117046039 + MIR SINE MIR 70 203 -59 8 621 3752 20 121 0 chr11 4797818 4798258 -117045598 + MT2_Mm LTR ERVL 1 493 0 8 621 819 218 0 13 chr11 4798421 4798570 -117045286 - B1_Mur3 SINE Alu -2 147 1 8 621 516 232 11 0 chr11 4798613 4798708 -117045148 - B3A SINE B2 -102 96 1 8 621 312 27 0 0 chr11 4798750 4798787 -117045069 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 8 621 1228 47 0 7 chr11 4798787 4798926 -117044930 - B1_Mus1 SINE Alu -9 139 1 8 621 360 264 108 15 chr11 4798934 4799122 -117044734 - L1_Rod LINE L1 -2509 3338 3135 8 621 984 156 190 22 chr11 4799122 4799306 -117044550 - B3 SINE B2 0 216 2 8 621 360 264 108 15 chr11 4799306 4799321 -117044535 - L1_Rod LINE L1 -2713 3134 3117 8 621 1184 55 7 0 chr11 4799386 4799532 -117044324 - B1_Mus2 SINE Alu 0 147 1 8 621 655 258 126 0 chr11 4799566 4799756 -117044100 - B3 SINE B2 -2 214 1 8 621 543 196 10 0 chr11 4800297 4800394 -117043462 - ID_B1 SINE B4 -2 222 125 8 621 224 232 14 55 chr11 4800605 4800678 -117043178 - B3A SINE B2 -38 160 91 8 621 313 232 253 0 chr11 4800853 4800948 -117042908 - PB1D10 SINE Alu -1 119 1 8 621 221 269 90 0 chr11 4800992 4801059 -117042797 - B1F SINE Alu -17 132 60 8 621 189 107 0 0 chr11 4801771 4801799 -117042057 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 8 621 371 221 174 46 chr11 4801825 4801934 -117041922 - B1_Mur1 SINE Alu -25 124 2 8 621 395 194 0 150 chr11 4802980 4803107 -117040749 + MT2B LTR ERVL 157 264 -337 8 621 992 101 14 0 chr11 4803002 4803141 -117040715 + B1_Mur4 SINE Alu 10 150 0 8 621 21 36 0 0 chr11 4803201 4803229 -117040627 + AT_rich Low_complexity Low_complexity 1 28 0 8 621 1411 84 21 0 chr11 4803498 4803688 -117040168 - B2_Mm2 SINE B2 -1 194 1 8 621 339 254 0 0 chr11 4804430 4804501 -117039355 + ID4_ SINE ID 8 78 -5 8 621 512 274 183 19 chr11 4804501 4804709 -117039147 + B4A SINE B4 7 248 -44 8 621 345 100 0 0 chr11 4804761 4804811 -117039045 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 621 237 86 0 0 chr11 4804929 4804964 -117038892 - MTEb LTR MaLR 0 379 345 8 621 268 289 10 82 chr11 4804965 4805063 -117038793 - RSINE1 SINE B4 -68 97 7 8 621 244 186 0 0 chr11 4805071 4805114 -117038742 - ID SINE ID -181 43 1 8 621 1008 184 70 25 chr11 4805131 4805332 -117038524 - MTD LTR MaLR 0 419 210 9 621 472 221 65 37 chr11 4805325 4805433 -117038423 + RSINE1 SINE B4 34 144 -21 9 621 190 351 0 0 chr11 4805507 4805581 -117038275 + MIRb SINE MIR 172 245 -23 9 621 336 267 13 0 chr11 4806197 4806272 -117037584 + B1F1 SINE Alu 71 146 -3 9 621 1203 62 0 0 chr11 4806539 4806685 -117037171 - B1_Mus2 SINE Alu 0 147 2 9 621 23 54 0 0 chr11 4806772 4806809 -117037047 + AT_rich Low_complexity Low_complexity 1 37 0 9 621 1286 73 0 6 chr11 4806828 4807008 -117036848 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 9 621 1596 17 22 0 chr11 4807008 4807188 -117036668 - B2_Mm1a SINE B2 -8 185 2 9 621 966 143 7 0 chr11 4807190 4807337 -117036519 - B1_Mur3 SINE Alu -1 148 1 9 621 668 221 254 38 chr11 4807482 4807722 -117036134 - B4A SINE B4 0 292 1 9 621 391 263 101 0 chr11 4807778 4807877 -117035979 + PB1 SINE Alu 17 125 -2 9 621 717 245 163 0 chr11 4807889 4808073 -117035783 + B3 SINE B2 1 214 -2 9 621 390 245 174 0 chr11 4808133 4808231 -117035625 - PB1D9 SINE Alu -5 115 1 9 621 287 293 26 124 chr11 4808247 4808269 -117035587 - L1ME3A LINE L1 -3 6170 6153 9 621 268 211 75 50 chr11 4808269 4808349 -117035507 + ID4_ SINE ID 1 82 -1 9 621 287 293 26 124 chr11 4808349 4808408 -117035448 - L1ME3A LINE L1 -21 6152 6099 9 621 1380 72 11 16 chr11 4808408 4808592 -117035264 - B2_Mm1t SINE B2 -9 184 2 9 621 287 293 26 124 chr11 4808592 4808669 -117035187 - L1ME3A LINE L1 -75 6098 6026 9 621 688 193 129 27 chr11 4808669 4808855 -117035001 - B3 SINE B2 -9 207 3 9 621 287 293 26 124 chr11 4808855 4808959 -117034897 - L1ME3A LINE L1 -148 6025 5932 9 621 332 239 57 0 chr11 4808983 4809071 -117034785 - L1ME3A LINE L1 -208 5965 5873 9 621 180 0 0 0 chr11 4809076 4809096 -117034760 + (T)n Simple_repeat Simple_repeat 1 20 0 9 621 1111 68 0 58 chr11 4809096 4809252 -117034604 - B1_Mus2 SINE Alu 0 147 1 9 621 271 315 71 9 chr11 4809348 4809460 -117034396 - L1ME3A LINE L1 -437 5736 5618 9 621 489 250 142 27 chr11 4809643 4809791 -117034065 - RSINE1 SINE B4 0 165 1 9 621 1463 63 26 0 chr11 4809934 4810124 -117033732 - B2_Mm2 SINE B2 0 195 1 9 621 1329 66 72 0 chr11 4810202 4810383 -117033473 - B2_Mm2 SINE B2 -1 194 1 9 621 340 275 0 12 chr11 4810482 4810563 -117033293 + ID4_ SINE ID 4 83 0 9 621 209 314 60 60 chr11 4812263 4812412 -117031444 - MIRb SINE MIR -115 153 5 9 621 313 333 111 0 chr11 4813127 4813235 -117030621 + B1F2 SINE Alu 19 138 -11 9 621 207 69 0 0 chr11 4813371 4813400 -117030456 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 9 621 1227 63 0 6 chr11 4813402 4813561 -117030295 - B2_Mm2 SINE B2 -36 159 2 9 621 684 212 72 123 chr11 4813640 4813876 -117029980 + B4A SINE B4 1 224 -68 9 621 705 128 46 0 chr11 4813890 4813999 -117029857 + B1_Mus2 SINE Alu 34 147 0 9 621 180 111 0 0 chr11 4814748 4814775 -117029081 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 621 276 253 161 0 chr11 4814779 4814866 -117028990 - RSINE1 SINE B4 -24 141 41 9 621 232 65 0 61 chr11 4814925 4814949 -117028907 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 9 621 1431 84 5 10 chr11 4814949 4815142 -117028714 - B2_Mm1a SINE B2 0 193 2 9 621 232 65 0 61 chr11 4815142 4815166 -117028690 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 9 621 1168 54 0 13 chr11 4815171 4815320 -117028536 - B1_Mus2 SINE Alu 0 147 1 9 621 424 191 75 0 chr11 4815329 4815423 -117028433 - B1_Mur2 SINE Alu -2 147 47 9 621 453 110 0 0 chr11 4816382 4816464 -117027392 + (TC)n Simple_repeat Simple_repeat 2 83 0 9 621 433 189 147 0 chr11 4816464 4816559 -117027297 - B1_Mur1 SINE Alu -18 131 23 9 621 297 273 64 13 chr11 4816549 4816627 -117027229 + B1F1 SINE Alu 66 147 -2 9 621 1096 58 58 0 chr11 4816660 4816798 -117027058 + B1_Mus2 SINE Alu 2 147 0 9 621 916 241 79 25 chr11 4817064 4817341 -117026515 - B4A SINE B4 0 292 1 9 621 282 270 32 44 chr11 4817415 4817540 -117026316 + B3A SINE B2 3 136 -59 9 621 890 145 8 0 chr11 4817841 4817972 -117025884 + B1_Mus2 SINE Alu 1 132 -15 9 621 1257 48 0 0 chr11 4819078 4819225 -117024631 + B1_Mus1 SINE Alu 2 148 0 9 621 346 309 0 0 chr11 4819435 4819610 -117024246 + GA-rich Low_complexity Low_complexity 4 178 0 9 621 971 135 0 13 chr11 4821124 4821274 -117022582 + B1_Mur3 SINE Alu 2 149 0 9 621 196 244 60 60 chr11 4822398 4822481 -117021375 - MIRb SINE MIR -68 200 118 9 621 442 228 25 0 chr11 4822800 4822879 -117020977 + ID4 SINE ID 2 82 -1 9 621 24 0 0 0 chr11 4822962 4822986 -117020870 + AT_rich Low_complexity Low_complexity 1 24 0 9 621 477 300 17 81 chr11 4822986 4823160 -117020696 - RSINE1 SINE B4 0 165 3 9 621 398 203 40 0 chr11 4823178 4823252 -117020604 - PB1D9 SINE Alu -1 119 43 9 621 313 288 103 69 chr11 4823254 4823271 -117020585 - B4 SINE B4 -66 226 179 9 621 533 239 35 17 chr11 4823271 4823386 -117020470 - B1F SINE Alu -32 117 1 9 621 313 288 103 69 chr11 4823386 4823429 -117020427 - B4 SINE B4 -66 178 46 9 621 385 270 30 53 chr11 4823736 4823869 -117019987 + B4 SINE B4 9 138 -154 9 621 447 274 39 0 chr11 4824052 4824154 -117019702 + ID_B1 SINE B4 102 207 -17 9 621 350 254 122 9 chr11 4824154 4824166 -117019690 + B1F SINE Alu 21 147 -2 9 621 317 143 35 23 chr11 4824190 4824276 -117019580 + GA-rich Low_complexity Low_complexity 4 90 0 9 621 928 201 36 5 chr11 4824278 4824473 -117019383 + B3 SINE B2 1 201 -15 9 621 664 209 67 0 chr11 4825522 4825656 -117018200 + B1_Mur1 SINE Alu 1 143 -6 9 621 189 0 0 0 chr11 4826970 4826991 -117016865 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 9 621 382 301 19 60 chr11 4827053 4827090 -117016766 + ID_B1 SINE B4 49 154 -70 9 621 477 271 0 0 chr11 4827090 4827186 -117016670 + B1F SINE Alu 2 97 -52 9 621 752 173 202 22 chr11 4827901 4828084 -117015772 - MTD LTR MaLR -13 406 191 9 621 243 250 0 0 chr11 4828073 4828125 -117015731 - MTD LTR MaLR -361 58 7 9 621 509 99 0 0 chr11 4828983 4829054 -117014802 - ORR1A2-int LTR MaLR -1892 71 1 9 621 2422 72 28 3 chr11 4829054 4829373 -117014483 - ORR1A2 LTR MaLR 0 327 1 9 621 279 194 92 46 chr11 4829440 4829505 -117014351 + B1_Mur4 SINE Alu 6 73 -77 9 621 885 159 0 0 chr11 4829727 4829865 -117013991 + B1_Mur2 SINE Alu 5 142 -7 9 621 780 279 27 0 chr11 4829896 4830079 -117013777 + ID_B1 SINE B4 3 190 -34 9 621 284 304 35 97 chr11 4829983 4830096 -117013760 + PB1D10 SINE Alu 10 115 -2 9 621 1502 145 213 12 chr11 4830218 4830546 -117013310 + ORR1B1 LTR MaLR 1 394 0 9 621 290 280 73 18 chr11 4830689 4830798 -117013058 + B3A SINE B2 68 182 -16 9 621 246 234 65 0 chr11 4831779 4831856 -117012000 - ID2 SINE ID -1 82 1 9 621 1844 172 95 44 chr11 4831863 4832034 -117011822 - MTC LTR MaLR -8 413 247 9 621 422 61 0 15 chr11 4832034 4832101 -117011755 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 621 1844 172 95 44 chr11 4832101 4832319 -117011537 - MTC LTR MaLR -175 246 6 9 621 349 301 104 15 chr11 4832332 4832467 -117011389 - PB1D10 SINE Alu -2 147 1 9 621 303 224 128 69 chr11 4832755 4832884 -117010972 - PB1D9 SINE Alu -22 127 1 9 621 267 247 50 40 chr11 4833299 4833400 -117010456 + RSINE1 SINE B4 64 165 0 9 621 471 315 40 14 chr11 4833402 4833550 -117010306 + RSINE1 SINE B4 8 159 -6 9 621 288 0 0 0 chr11 4833553 4833585 -117010271 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 621 2066 104 87 9 chr11 4833594 4833952 -117009904 + ORR1B1 LTR MaLR 1 372 -22 9 621 224 143 61 0 chr11 4833952 4834001 -117009855 - B1_Mur1 SINE Alu -1 148 97 9 621 1475 42 26 0 chr11 4834078 4834268 -117009588 - B2_Mm2 SINE B2 0 195 1 9 621 35 41 0 0 chr11 4834362 4834411 -117009445 + AT_rich Low_complexity Low_complexity 1 49 0 9 621 806 133 119 0 chr11 4834450 4834593 -117009263 - Lx5 LINE L1 -225 6825 6666 9 621 376 252 36 9 chr11 4834593 4834705 -117009151 - RSINE1 SINE B4 -47 118 4 9 621 377 246 104 7 chr11 4834778 4834913 -117008943 + ID_B1 SINE B4 76 223 -1 9 621 218 158 83 50 chr11 4834997 4835057 -117008799 - B1_Mur4 SINE Alu -43 107 46 9 621 772 192 14 0 chr11 4835110 4835256 -117008600 + B1_Mur1 SINE Alu 1 148 -1 9 621 614 262 88 12 chr11 4835458 4835628 -117008228 - B3 SINE B2 -5 211 29 9 621 1325 80 26 5 chr11 4835628 4835817 -117008039 - B2_Mm2 SINE B2 -1 194 2 9 621 474 217 18 36 chr11 4835818 4835928 -117007928 - ID_B1 SINE B4 -43 181 74 9 621 1142 62 0 0 chr11 4835975 4836121 -117007735 - B1_Mm SINE Alu 0 147 2 9 621 354 213 137 11 chr11 4836198 4836293 -117007563 + RLTR40 LTR ERVK 1 107 -710 9 621 324 302 0 79 chr11 4836283 4836409 -117007447 + RLTR40 LTR ERVK 696 811 -6 9 621 553 292 93 15 chr11 4836470 4836675 -117007181 + ID_B1 SINE B4 2 222 -2 9 621 357 191 0 0 chr11 4836804 4836867 -117006989 + B1F SINE Alu 1 63 -86 9 621 262 295 22 65 chr11 4837019 4837157 -117006699 + ID_B1 SINE B4 84 215 -9 9 621 656 194 35 0 chr11 4837334 4837478 -117006378 - B1_Mur4 SINE Alu 0 150 2 9 621 357 257 34 42 chr11 4838003 4838121 -117005735 + PB1D10 SINE Alu 1 117 0 9 621 788 118 140 45 chr11 4838446 4838624 -117005232 - B2_Mm2 SINE B2 0 195 1 9 621 282 143 0 0 chr11 4841134 4841183 -117002673 + (TTC)n Simple_repeat Simple_repeat 1 49 0 1 621 784 190 7 0 chr11 4841877 4842019 -117001837 + B1_Mur3 SINE Alu 1 143 -6 1 621 256 312 20 30 chr11 4842312 4842411 -117001445 + MIR SINE MIR 96 193 -69 1 621 567 28 0 0 chr11 4843097 4843169 -117000687 - B1_Mus2 SINE Alu -8 139 68 1 621 384 302 40 20 chr11 4843256 4843408 -117000448 - RSINE1 SINE B4 -7 158 4 1 621 362 264 35 43 chr11 4843495 4843610 -117000246 + RSINE1 SINE B4 3 116 -49 1 621 406 308 75 0 chr11 4843625 4843758 -117000098 + B1_Mur4 SINE Alu 1 143 -7 1 621 704 220 47 18 chr11 4844443 4844614 -116999242 + URR1A DNA MER1_type 51 226 0 1 621 283 211 82 27 chr11 4845441 4845514 -116998342 - MIR SINE MIR -154 108 32 1 622 685 158 0 48 chr11 4850445 4850571 -116993285 + B1_Mur4 SINE Alu 2 121 -29 1 622 450 240 15 81 chr11 4850453 4850589 -116993267 + ID_B1 SINE B4 90 216 -8 1 622 183 42 0 0 chr11 4850662 4850686 -116993170 + (TCCA)n Simple_repeat Simple_repeat 2 25 0 1 622 278 246 0 42 chr11 4851023 4851167 -116992689 + CT-rich Low_complexity Low_complexity 3 140 0 1 622 797 201 0 4 chr11 4851197 4851427 -116992429 + CT-rich Low_complexity Low_complexity 1 229 0 1 622 1533 113 264 15 chr11 4851450 4851783 -116992073 - MTC LTR MaLR 0 421 6 1 622 278 278 93 0 chr11 4851896 4851993 -116991863 - PB1D10 SINE Alu -10 107 2 1 622 565 252 43 0 chr11 4852239 4852354 -116991502 + B1F SINE Alu 1 120 -29 1 622 484 258 90 20 chr11 4853229 4853408 -116990448 - RSINE1 SINE B4 -21 203 2 1 622 274 333 55 16 chr11 4853436 4853564 -116990292 + L2a LINE L2 3287 3419 -7 1 622 269 311 0 11 chr11 4853802 4853893 -116989963 + C-rich Low_complexity Low_complexity 5 94 0 1 622 240 295 37 37 chr11 4854531 4854612 -116989244 - ID2 SINE ID -1 82 2 1 622 789 251 35 10 chr11 4854644 4854845 -116989011 - B3 SINE B2 0 216 11 1 622 410 284 104 0 chr11 4854842 4854976 -116988880 - B1F SINE Alu 0 149 2 1 622 1196 41 0 0 chr11 4855003 4855149 -116988707 - B1_Mus2 SINE Alu 0 147 2 1 622 365 274 136 0 chr11 4855179 4855304 -116988552 - MIR SINE MIR -84 178 38 1 622 21 82 0 0 chr11 4855949 4855998 -116987858 + AT_rich Low_complexity Low_complexity 1 49 0 1 622 312 150 325 0 chr11 4856024 4856104 -116987752 + B1_Mus1 SINE Alu 5 110 -38 1 622 195 42 0 0 chr11 4856106 4856130 -116987726 + (TCG)n Simple_repeat Simple_repeat 2 25 0 1 622 183 80 0 0 chr11 4856130 4856155 -116987701 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 622 1204 108 0 6 chr11 4856157 4856334 -116987522 - B2_Mm2 SINE B2 -19 176 1 1 622 469 258 76 0 chr11 4856479 4856611 -116987245 + ID_B1 SINE B4 82 223 -1 1 622 314 270 110 0 chr11 4857076 4857176 -116986680 - PB1D7 SINE Alu -9 111 1 1 622 221 304 72 0 chr11 4857805 4857874 -116985982 + ID2 SINE ID 7 80 -3 1 622 1300 218 87 28 chr11 4858177 4858498 -116985358 + MTD LTR MaLR 70 409 -10 1 622 317 308 91 27 chr11 4858504 4858544 -116985312 - ID_B1 SINE B4 -105 119 82 1 622 405 0 0 0 chr11 4858544 4858589 -116985267 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 622 317 308 91 27 chr11 4858589 4858658 -116985198 - ID SINE ID -143 81 3 1 622 243 229 0 0 chr11 4858731 4858779 -116985077 + C-rich Low_complexity Low_complexity 5 52 0 1 622 223 224 20 0 chr11 4858801 4858850 -116985006 - ID4 SINE ID -11 72 23 1 622 432 0 0 0 chr11 4859746 4859794 -116984062 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 622 738 294 70 19 chr11 4859820 4860035 -116983821 - B4A SINE B4 0 292 67 1 622 300 260 143 0 chr11 4860053 4860130 -116983726 - PB1D10 SINE Alu -6 121 34 1 622 969 161 120 0 chr11 4860355 4860547 -116983309 - B3 SINE B2 0 216 2 1 622 241 297 14 0 chr11 4861104 4861178 -116982678 + ID4 SINE ID 2 76 -7 1 622 1188 58 103 0 chr11 4861363 4861537 -116982319 + B2_Mm2 SINE B2 1 192 -3 1 622 908 161 7 0 chr11 4861665 4861808 -116982048 + B1_Mur3 SINE Alu 1 144 -5 1 622 697 182 27 20 chr11 4861904 4862050 -116981806 - B1_Mus1 SINE Alu 0 148 2 1 622 564 270 37 60 chr11 4862056 4862108 -116981748 - B3 SINE B2 0 216 173 1 622 342 80 0 0 chr11 4862108 4862158 -116981698 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 622 564 270 37 60 chr11 4862158 4862322 -116981534 - B3 SINE B2 -44 172 5 1 622 1161 41 0 7 chr11 4862357 4862505 -116981351 - B1_Mus1 SINE Alu 0 148 2 1 622 1063 103 0 0 chr11 4864524 4864669 -116979187 - B1_Mus2 SINE Alu -1 146 2 1 622 267 118 59 0 chr11 4864981 4865032 -116978824 + PB1D9 SINE Alu 67 120 0 1 622 677 206 0 0 chr11 4865042 4865168 -116978688 + B1_Mur1 SINE Alu 11 136 -13 1 622 302 0 26 0 chr11 4865362 4865400 -116978456 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 1 622 646 189 74 0 chr11 4865400 4865522 -116978334 - B1_Mus1 SINE Alu -13 135 5 1 622 482 208 65 65 chr11 4865598 4865737 -116978119 - Lx9 LINE L1 -161 7483 7345 1 622 285 279 0 12 chr11 4866090 4866170 -116977686 - ID4_ SINE ID -2 81 3 1 622 599 174 9 18 chr11 4866255 4866366 -116977490 - B1_Mus1 SINE Alu -2 146 37 1 622 402 21 0 0 chr11 4866429 4866476 -116977380 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 622 269 236 0 0 chr11 4866744 4866799 -116977057 + PB1D10 SINE Alu 36 90 -27 1 622 438 261 108 0 chr11 4867509 4867639 -116976217 - B1F2 SINE Alu -5 144 1 1 622 198 0 0 0 chr11 4869133 4869155 -116974701 + (C)n Simple_repeat Simple_repeat 1 22 0 1 622 694 303 21 5 chr11 4869295 4869481 -116974375 - ID_B1 SINE B4 -33 191 3 1 622 933 206 336 3 chr11 4869744 4870056 -116973800 - MTD LTR MaLR -3 416 1 1 622 236 250 45 107 chr11 4870226 4870338 -116973518 + ORR1A2 LTR MaLR 6 110 -249 1 622 207 0 0 0 chr11 4870345 4870368 -116973488 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 1 622 766 110 39 0 chr11 4870369 4870496 -116973360 + B1_Mur3 SINE Alu 17 148 -1 1 622 847 104 0 9 chr11 4870748 4870891 -116972965 + ORR1A2 LTR MaLR 180 314 -15 1 622 263 295 86 11 chr11 4870963 4871138 -116972718 - L1MB7 LINE L1 -16 6168 5981 1 622 844 55 158 0 chr11 4871257 4871384 -116972472 + B1_Mus1 SINE Alu 2 148 0 1 622 1182 160 229 0 chr11 4871580 4871873 -116971983 - ORR1D1 LTR MaLR -14 360 1 1 622 864 158 7 0 chr11 4871905 4872051 -116971805 - B1_Mus1 SINE Alu 0 148 2 1 622 555 249 63 11 chr11 4872152 4872327 -116971529 - L1MB8 LINE L1 -167 6011 5828 1 622 1412 49 5 5 chr11 4872327 4872512 -116971344 - B2_Mm2 SINE B2 -8 187 3 1 622 221 149 0 41 chr11 4872832 4872881 -116970975 + GA-rich Low_complexity Low_complexity 1 47 0 1 622 402 246 118 40 chr11 4873075 4873227 -116970629 + ID_B1 SINE B4 3 166 -58 1 622 521 30 15 0 chr11 4873246 4873313 -116970543 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 622 288 211 28 0 chr11 4873455 4873526 -116970330 - MIR SINE MIR -62 146 74 1 622 302 256 11 0 chr11 4873709 4873804 -116970052 + ID4 SINE ID 6 104 -48 1 622 754 242 131 65 chr11 4873859 4874278 -116969578 - RMER4A LTR ERVK -9 576 58 1 622 186 43 0 0 chr11 4874301 4874324 -116969532 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 622 1136 54 0 33 chr11 4874328 4874480 -116969376 - B1_Mus2 SINE Alu 0 147 1 1 622 191 245 37 19 chr11 4874894 4874948 -116968908 - MIR SINE MIR -145 117 63 1 622 776 121 305 6 chr11 4875131 4875305 -116968551 + URR1A DNA MER1_type 1 226 0 1 622 261 0 0 0 chr11 4875681 4875710 -116968146 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 1 622 552 262 34 0 chr11 4876203 4876351 -116967505 - ID_B1 SINE B4 -4 220 72 1 622 448 328 79 10 chr11 4876396 4876599 -116967257 - MLT2F LTR ERVL -19 644 428 1 622 260 302 198 16 chr11 4876771 4876892 -116966964 - MLT2F LTR ERVL -517 146 4 1 622 642 247 20 0 chr11 4876897 4877043 -116966813 + B1_Mur2 SINE Alu 1 149 0 1 622 180 0 0 0 chr11 4877057 4877077 -116966779 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 622 227 312 104 0 chr11 4877114 4877191 -116966665 + B4A SINE B4 1 85 -207 1 622 302 241 47 71 chr11 4877309 4877394 -116966462 - RSINE1 SINE B4 -78 87 5 1 622 242 224 13 38 chr11 4877412 4877491 -116966365 - ID4 SINE ID -5 78 2 1 622 306 125 0 0 chr11 4877612 4877660 -116966196 + (T)n Simple_repeat Simple_repeat 1 48 0 1 622 189 0 0 0 chr11 4877666 4877687 -116966169 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 622 1063 95 0 0 chr11 4877701 4877848 -116966008 - B1_Mus1 SINE Alu 0 148 2 1 622 913 178 81 0 chr11 4878016 4878213 -116965643 + B3 SINE B2 1 213 -3 1 622 483 130 0 0 chr11 4878478 4878555 -116965301 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 622 644 231 49 0 chr11 4878567 4878710 -116965146 - B3A SINE B2 -48 150 1 1 622 281 26 26 0 chr11 4878714 4878752 -116965104 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 622 414 0 0 0 chr11 4878853 4878899 -116964957 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 622 1173 49 0 0 chr11 4878900 4879044 -116964812 - B1_Mm SINE Alu -3 144 1 1 622 252 169 0 174 chr11 4879050 4879064 -116964792 - RMER19C LTR ERVK -12 599 586 1 622 1111 92 81 0 chr11 4879064 4879238 -116964618 - B2_Mm2 SINE B2 -6 189 2 1 622 409 183 0 0 chr11 4879238 4879309 -116964547 - RMER19B LTR ERVK -16 886 816 1 622 605 168 65 7 chr11 4879291 4879429 -116964427 - RMER19B LTR ERVK -756 146 1 1 622 305 297 28 28 chr11 4879486 4879628 -116964228 - B4 SINE B4 -148 144 3 1 622 1283 5 15 27 chr11 4879650 4880056 -116963800 + (CA)n Simple_repeat Simple_repeat 1 400 0 1 622 574 175 19 0 chr11 4880099 4880191 -116963665 - B1_Mur2 SINE Alu -19 130 26 1 622 704 302 130 37 chr11 4880191 4880202 -116963654 + MLT1E3 LTR MaLR 132 141 -486 1 622 513 47 0 0 chr11 4880202 4880266 -116963590 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 622 795 302 130 37 chr11 4880266 4880708 -116963148 + MLT1E3 LTR MaLR 142 627 0 1 622 194 264 80 94 chr11 4880733 4880871 -116962985 - MIRc SINE MIR -103 165 30 1 622 437 249 134 26 chr11 4881157 4881351 -116962505 + L1MC4a LINE L1 6684 6898 -984 1 622 297 244 211 0 chr11 4881372 4881462 -116962394 + PB1D10 SINE Alu 2 110 -7 1 622 733 172 42 13 chr11 4881478 4881651 -116962205 + B3 SINE B2 9 198 0 1 622 537 135 39 32 chr11 4881697 4881817 -116962039 + PB1D9 SINE Alu 10 128 -21 1 622 390 184 0 0 chr11 4881895 4881971 -116961885 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 622 419 312 0 16 chr11 4882004 4882131 -116961725 + RSINE1 SINE B4 3 127 -38 1 622 315 0 0 0 chr11 4882149 4882184 -116961672 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 622 504 193 42 50 chr11 4882202 4882322 -116961534 + PB1D9 SINE Alu 1 119 -1 1 622 265 289 24 0 chr11 4882341 4882424 -116961432 + BC1_Mm scRNA scRNA 1 85 -67 1 622 456 355 11 28 chr11 4882427 4882517 -116961339 + L1MB3 LINE L1 5827 5911 -272 1 622 1311 176 166 75 chr11 4882517 4882758 -116961098 - MTC LTR MaLR 0 421 125 1 622 1181 41 0 0 chr11 4882758 4882904 -116960952 + B1_Mus2 SINE Alu 2 147 0 1 622 1311 176 166 75 chr11 4882904 4883048 -116960808 - MTC LTR MaLR -297 124 1 1 622 456 355 11 28 chr11 4883048 4883241 -116960615 + L1MB3 LINE L1 5912 6105 -78 1 622 319 266 172 31 chr11 4883366 4883494 -116960362 - B1F1 SINE Alu -1 148 3 1 622 281 251 57 1 chr11 4883543 4883666 -116960190 - MIRc SINE MIR -68 200 71 1 622 462 36 0 0 chr11 4883846 4883902 -116959954 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 622 297 246 0 28 chr11 4883902 4883973 -116959883 - ID4_ SINE ID -10 73 5 1 622 403 321 90 21 chr11 4884505 4884693 -116959163 - MER2 DNA MER2_type -1 344 144 1 622 273 220 145 0 chr11 4885037 4885146 -116958710 + L1MD2 LINE L1 6194 6304 -55 1 622 597 237 55 48 chr11 4885148 4885294 -116958562 - B1_Mur2 SINE Alu -1 148 2 1 622 413 213 213 0 chr11 4885298 4885392 -116958464 - B1_Mus1 SINE Alu -33 115 2 1 622 627 156 179 109 chr11 4885400 4885601 -116958255 - B3 SINE B2 0 216 2 1 622 375 200 180 0 chr11 4885702 4885802 -116958054 + B1_Mus2 SINE Alu 1 118 -29 1 622 392 272 29 0 chr11 4885807 4885910 -116957946 + ID_B1 SINE B4 18 123 -101 1 622 279 267 10 100 chr11 4885852 4885952 -116957904 + PB1D7 SINE Alu 28 118 -2 1 622 1236 104 15 25 chr11 4886072 4886269 -116957587 - B2_Mm2 SINE B2 0 195 1 1 622 416 303 73 34 chr11 4887521 4887726 -116956130 - MIRb SINE MIR -23 245 33 1 622 426 227 152 30 chr11 4888336 4888468 -116955388 - B1F SINE Alu -1 148 1 1 622 234 0 0 0 chr11 4888474 4888500 -116955356 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 1 622 209 287 19 9 chr11 4888740 4888851 -116955005 + MIRc SINE MIR 3 109 -159 1 622 460 283 92 92 chr11 4888875 4889081 -116954775 + ID_B1 SINE B4 11 216 -8 1 622 276 133 0 0 chr11 4889559 4889619 -116954237 + (CTG)n Simple_repeat Simple_repeat 3 62 0 1 622 360 111 0 0 chr11 4889621 4889675 -116954181 + (TCC)n Simple_repeat Simple_repeat 3 56 0 1 622 751 181 0 73 chr11 4889746 4889883 -116953973 + B1_Mus2 SINE Alu 3 129 -18 1 622 227 235 176 0 chr11 4890249 4890334 -116953522 + MLT-int LTR MaLR 345 444 -1291 1 622 463 309 19 32 chr11 4890872 4891029 -116952827 - RSINE1 SINE B4 -10 155 1 1 622 770 253 88 0 chr11 4891137 4891307 -116952549 - B3 SINE B2 -12 204 20 1 622 422 270 115 31 chr11 4891369 4891499 -116952357 - RSINE1 SINE B4 -22 143 3 1 622 293 251 120 61 chr11 4891760 4891979 -116951877 - L2b LINE L2 0 3426 3175 1 622 214 296 0 0 chr11 4892162 4892216 -116951640 - ID2 SINE ID -29 54 1 1 622 419 65 0 31 chr11 4892354 4892418 -116951438 + (TTCTC)n Simple_repeat Simple_repeat 2 63 0 1 622 359 316 96 15 chr11 4892538 4892761 -116951095 - L2b LINE L2 -145 3242 3003 1 622 1366 154 248 29 chr11 4892878 4893024 -116950832 - ORR1D1 LTR MaLR 0 374 216 1 622 354 23 0 0 chr11 4893024 4893067 -116950789 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 622 1366 154 248 29 chr11 4893067 4893227 -116950629 - ORR1D1 LTR MaLR -159 215 1 1 622 279 256 12 49 chr11 4893248 4893330 -116950526 - ID4 SINE ID -3 80 2 1 622 207 330 149 65 chr11 4893530 4893744 -116950112 - L2a LINE L2 -36 3390 3159 1 622 557 209 132 0 chr11 4893744 4893873 -116949983 + B1F1 SINE Alu 1 146 -3 1 622 650 191 79 64 chr11 4893888 4894028 -116949828 + B1_Mur1 SINE Alu 7 148 -1 1 622 676 248 0 68 chr11 4894047 4894194 -116949662 + RSINE1 SINE B4 3 139 -26 1 622 263 356 33 46 chr11 4894202 4894268 -116949588 - L2a LINE L2 -224 3202 3139 1 622 694 174 129 0 chr11 4894268 4894400 -116949456 + B1_Mur2 SINE Alu 1 149 0 1 622 263 356 33 46 chr11 4894400 4894486 -116949370 - L2a LINE L2 -288 3138 3052 1 622 275 172 90 45 chr11 4894509 4894576 -116949280 + B3 SINE B2 2 71 -145 1 622 1554 155 89 19 chr11 4894611 4895167 -116948689 - RMER6C LTR ERVK -22 668 1 1 622 460 287 150 39 chr11 4895167 4895628 -116948228 - L2a LINE L2 -846 2573 2062 1 622 237 289 167 12 chr11 4895751 4895835 -116948021 - PB1D10 SINE Alu -20 97 1 1 622 620 167 35 17 chr11 4896441 4896557 -116947299 - PB1D9 SINE Alu 0 120 3 1 622 440 285 16 31 chr11 4897054 4897181 -116946675 + MIRb SINE MIR 69 193 -75 1 622 399 115 333 0 chr11 4897266 4897344 -116946512 - B2_Mm1t SINE B2 -85 108 5 1 622 1191 75 0 0 chr11 4897358 4897505 -116946351 - B1_Mus2 SINE Alu 0 147 1 1 622 180 97 0 0 chr11 4897512 4897543 -116946313 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 1 622 1247 34 7 0 chr11 4897543 4897690 -116946166 - B1_Mus1 SINE Alu 0 148 1 1 622 516 178 97 35 chr11 4897726 4897842 -116946014 - RSINE1 SINE B4 -33 132 6 1 622 653 252 29 7 chr11 4898473 4898613 -116945243 - B4 SINE B4 -13 279 137 1 622 371 208 52 0 chr11 4898631 4898708 -116945148 - B4 SINE B4 -201 91 11 1 622 531 272 0 0 chr11 4898764 4898878 -116944978 - PB1D10 SINE Alu 0 117 4 1 622 229 298 33 67 chr11 4899278 4899293 -116944563 + MT2B2 LTR ERVL 153 164 -420 1 622 397 274 73 10 chr11 4899293 4899389 -116944467 + B1F SINE Alu 3 104 -45 1 622 1442 88 0 10 chr11 4899408 4899604 -116944252 - B2_Mm2 SINE B2 0 195 2 1 622 857 179 290 36 chr11 4899605 4899917 -116943939 - MTD LTR MaLR -14 405 24 1 622 482 258 117 0 chr11 4899925 4900045 -116943811 + RSINE1 SINE B4 1 134 -31 1 622 1438 73 5 5 chr11 4900610 4900802 -116943054 - B2_Mm1a SINE B2 0 193 2 1 622 211 346 12 0 chr11 4900818 4900899 -116942957 - L2c LINE L2 0 3387 3306 1 622 637 195 317 30 chr11 4901322 4901486 -116942370 + B3 SINE B2 2 212 -4 1 622 302 304 19 6 chr11 4901494 4901594 -116942262 + B1_Mus2 SINE Alu 1 104 -45 1 622 360 390 59 5 chr11 4901600 4901791 -116942065 - L1MC LINE L1 -2327 5555 5358 1 622 376 211 123 19 chr11 4901823 4901929 -116941927 - PB1D10 SINE Alu 0 117 1 1 622 216 0 0 0 chr11 4902173 4902197 -116941659 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 622 451 113 58 24 chr11 4902209 4902313 -116941543 - B1_Mus2 SINE Alu -1 146 1 1 622 324 339 62 9 chr11 4902352 4902465 -116941391 - RSINE1 SINE B4 -38 127 9 1 622 180 0 0 0 chr11 4902523 4902543 -116941313 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 1 622 647 180 85 57 chr11 4902548 4902689 -116941167 - B1_Mur3 SINE Alu 0 149 5 1 622 681 281 12 6 chr11 4902969 4903130 -116940726 + RSINE1 SINE B4 2 163 -2 1 622 923 213 120 16 chr11 4903217 4903408 -116940448 + B3 SINE B2 1 211 -5 1 622 526 330 158 17 chr11 4903433 4903673 -116940183 + B4A SINE B4 3 276 -16 1 622 21 36 0 0 chr11 4903718 4903746 -116940110 + AT_rich Low_complexity Low_complexity 1 28 0 1 622 1039 187 84 20 chr11 4903746 4903948 -116939908 + B3 SINE B2 2 216 0 1 622 259 289 200 0 chr11 4903977 4904067 -116939789 + PB1D9 SINE Alu 1 108 -12 1 622 342 134 0 0 chr11 4904067 4904134 -116939722 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 622 351 0 0 0 chr11 4904134 4904173 -116939683 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 622 271 206 0 14 chr11 4904312 4904386 -116939470 + B2_Mm2 SINE B2 123 195 0 1 622 333 0 0 0 chr11 4904512 4904549 -116939307 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 622 192 111 0 0 chr11 4904656 4904692 -116939164 + (T)n Simple_repeat Simple_repeat 1 36 0 1 622 1267 21 14 0 chr11 4904693 4904838 -116939018 - B1_Mus1 SINE Alu 0 148 2 1 622 267 365 12 0 chr11 4905030 4905115 -116938741 + RSINE1 SINE B4 11 96 -69 1 622 352 269 102 37 chr11 4905369 4905477 -116938379 - PB1D7 SINE Alu -1 119 5 1 622 270 231 77 0 chr11 4906106 4906171 -116937685 - PB1 SINE Alu -35 92 23 1 622 182 118 29 0 chr11 4906192 4906226 -116937630 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1 622 1492 50 15 5 chr11 4906948 4907148 -116936708 - L1_Mus3 LINE L1 -6 6632 6431 1 622 1359 64 13 1 chr11 4907148 4907352 -116936504 + L1_Mus3 LINE L1 6241 6447 -189 1 622 865 144 14 0 chr11 4907642 4907781 -116936075 - URR1B DNA MER1_type 0 225 85 1 622 575 247 226 17 chr11 4907785 4907962 -116935894 - B4A SINE B4 -74 218 5 1 622 247 258 106 11 chr11 4907979 4908073 -116935783 - MIRc SINE MIR -144 124 22 1 622 212 189 0 0 chr11 4908216 4908253 -116935603 + L2b LINE L2 3333 3369 -6 1 622 21 0 0 0 chr11 4908324 4908345 -116935511 + AT_rich Low_complexity Low_complexity 1 21 0 1 622 1184 176 14 56 chr11 4908490 4908706 -116935150 + B3 SINE B2 1 207 -9 1 622 724 224 37 29 chr11 4908706 4908905 -116934951 - B3 SINE B2 -11 184 1 1 622 643 62 0 0 chr11 4909246 4909343 -116934513 + L1Md_F2 LINE L1 6474 6570 -12 1 622 498 232 250 0 chr11 4910181 4910349 -116933507 - B3 SINE B2 -2 214 5 1 622 482 266 26 9 chr11 4910454 4910568 -116933288 + ID_B1 SINE B4 94 209 -15 1 622 676 153 130 0 chr11 4910669 4910800 -116933056 - B1_Mus1 SINE Alu 0 148 1 1 622 4156 36 0 0 chr11 4910812 4911289 -116932567 - L1Md_T LINE L1 0 6582 6106 1 622 207 0 0 0 chr11 4911784 4911807 -116932049 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 622 222 37 0 0 chr11 4913442 4913469 -116930387 + (T)n Simple_repeat Simple_repeat 1 27 0 1 622 1613 43 0 0 chr11 4913486 4913674 -116930182 - B2_Mm1a SINE B2 -4 189 2 1 622 191 336 76 50 chr11 4913778 4913897 -116929959 - MIRb SINE MIR -136 132 11 1 622 393 207 243 0 chr11 4914077 4914188 -116929668 + RSINE1 SINE B4 2 139 -26 1 622 279 0 0 0 chr11 4914192 4914223 -116929633 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 622 617 184 46 0 chr11 4914700 4914809 -116929047 - B1_Mus1 SINE Alu -9 139 26 1 622 270 0 0 0 chr11 4914828 4914858 -116928998 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1 622 249 279 0 8 chr11 4914921 4915001 -116928855 + MIRb SINE MIR 184 260 -2 1 622 365 268 0 0 chr11 4915196 4915267 -116928589 - ID4 SINE ID -10 73 3 1 622 1286 102 27 0 chr11 4915311 4915498 -116928358 + B2_Mm2 SINE B2 1 192 -3 1 622 260 350 43 73 chr11 4916099 4916165 -116927691 + B4 SINE B4 43 175 -117 1 622 370 231 53 68 chr11 4916165 4916289 -116927567 + PB1 SINE Alu 9 149 0 1 622 260 350 43 73 chr11 4916289 4916333 -116927523 + B4 SINE B4 176 269 -23 1 622 367 244 12 0 chr11 4917339 4917425 -116926431 + PB1D10 SINE Alu 23 109 -8 1 622 224 230 53 75 chr11 4918703 4918797 -116925059 - MIRb SINE MIR -56 212 121 1 622 656 273 27 0 chr11 4918870 4918947 -116924909 + ID SINE ID 4 84 -140 1 622 219 308 161 21 chr11 4918947 4919040 -116924816 + PB1D10 SINE Alu 1 106 -11 1 622 530 242 69 63 chr11 4919582 4919741 -116924115 + MER20 DNA MER1_type 2 161 -58 1 622 250 243 79 26 chr11 4919810 4919886 -116923970 + Charlie4z DNA MER1_type 53 132 -35 1 622 204 135 0 0 chr11 4920304 4920341 -116923515 + (T)n Simple_repeat Simple_repeat 1 37 0 1 622 1152 82 0 0 chr11 4920341 4920488 -116923368 - B1_Mus1 SINE Alu 0 148 2 1 622 1159 74 0 7 chr11 4920523 4920672 -116923184 + B1_Mus1 SINE Alu 1 148 0 1 622 397 327 184 10 chr11 4922583 4922784 -116921072 - MER68 LTR ERVL -239 324 89 1 622 366 268 31 0 chr11 4923441 4923538 -116920318 + PB1 SINE Alu 1 100 -27 1 622 689 272 7 0 chr11 4923697 4923844 -116920012 + B3A SINE B2 1 148 -50 1 622 249 33 0 0 chr11 4923844 4923874 -116919982 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 622 374 292 90 51 chr11 4923874 4923903 -116919953 + B2_Mm1a SINE B2 160 184 -9 1 622 697 248 15 0 chr11 4923898 4924031 -116919825 + B4 SINE B4 83 217 -75 1 622 210 269 147 15 chr11 4924050 4924118 -116919738 + ID4_ SINE ID 1 77 -6 1 622 381 235 35 0 chr11 4924556 4924641 -116919215 + PB1 SINE Alu 13 100 -27 1 622 800 119 103 15 chr11 4925889 4926025 -116917831 + B1_Mur4 SINE Alu 3 150 0 1 622 230 255 0 62 chr11 4926031 4926065 -116917791 + polypyrimidine Low_complexity Low_complexity 75 107 0 1 622 387 0 0 0 chr11 4926065 4926108 -116917748 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 622 230 255 0 62 chr11 4926108 4926186 -116917670 + CT-rich Low_complexity Low_complexity 2 74 0 1 622 505 285 256 34 chr11 4926628 4926944 -116916912 + MER82 DNA MER2_type 200 585 -68 1 622 370 305 59 8 chr11 4926971 4927090 -116916766 + ID_B1 SINE B4 80 204 -20 1 622 267 286 155 0 chr11 4927103 4927187 -116916669 + RSINE1 SINE B4 1 97 -68 1 622 1260 34 0 0 chr11 4927625 4927772 -116916084 - B1_Mus2 SINE Alu 0 147 1 1 622 204 40 0 0 chr11 4928496 4928521 -116915335 + (CCCG)n Simple_repeat Simple_repeat 3 27 0 1 622 221 264 55 14 chr11 4928821 4928894 -116914962 - MIRm SINE MIR -96 180 105 1 622 1230 62 0 0 chr11 4929057 4929201 -116914655 - B1_Mm SINE Alu 0 147 4 1 622 183 42 0 0 chr11 4929204 4929228 -116914628 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 622 737 252 7 14 chr11 4929246 4929391 -116914465 - RSINE1 SINE B4 -19 146 3 1 622 232 264 67 117 chr11 4929461 4929641 -116914215 + RMER17A2 LTR ERVK 207 377 -529 1 622 866 137 50 0 chr11 4929630 4929769 -116914087 - B1_Mus1 SINE Alu 0 148 3 1 622 544 226 35 55 chr11 4929811 4929956 -116913900 + B1F SINE Alu 6 147 -2 1 622 183 323 50 30 chr11 4930266 4930365 -116913491 - L2b LINE L2 -19 3356 3256 1 622 408 221 144 0 chr11 4930365 4930469 -116913387 + PB1D9 SINE Alu 1 119 -1 1 622 682 177 153 0 chr11 4931411 4931535 -116912321 + B1_Mus2 SINE Alu 5 147 0 1 622 344 259 0 24 chr11 4934385 4934459 -116909397 + PB1D10 SINE Alu 3 76 -41 1 622 560 241 9 0 chr11 4934459 4934567 -116909289 + PB1D9 SINE Alu 3 111 -9 1 622 835 193 0 21 chr11 4934584 4934727 -116909129 + B1_Mur2 SINE Alu 10 149 0 1 622 286 273 200 32 chr11 4935668 4935823 -116908033 - MIR SINE MIR -80 182 2 1 622 444 260 0 10 chr11 4935850 4935947 -116907909 - PB1D7 SINE Alu -8 112 17 1 622 255 263 48 95 chr11 4936035 4936119 -116907737 + ID_B1 SINE B4 109 188 -36 1 622 714 279 6 12 chr11 4936145 4936308 -116907548 + RSINE1 SINE B4 2 163 -2 1 622 197 263 0 70 chr11 4938481 4938569 -116905287 - MIRm SINE MIR -159 117 33 1 622 296 351 56 25 chr11 4943146 4943342 -116900514 - Lx8 LINE L1 -282 7191 6990 1 622 785 306 183 16 chr11 4943372 4943448 -116900408 - Lx8 LINE L1 -551 6922 6842 1 622 1223 43 0 0 chr11 4943448 4943587 -116900269 + B1_Mus2 SINE Alu 1 139 -8 1 622 785 306 183 16 chr11 4943587 4944085 -116899771 - Lx8 LINE L1 -632 6841 6253 1 622 358 265 71 0 chr11 4944145 4944243 -116899613 - RMER15-int LTR ERVL -2444 2555 2451 1 622 349 104 75 0 chr11 4944360 4944427 -116899429 - Lx7 LINE L1 -10 7686 7615 1 622 439 288 0 39 chr11 4944861 4944991 -116898865 - RMER15-int LTR ERVL -3814 1185 1061 1 622 1201 77 76 22 chr11 4944991 4945176 -116898680 - B2_Mm2 SINE B2 0 195 1 1 622 192 77 0 0 chr11 4945263 4945289 -116898567 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1 622 1357 44 0 16 chr11 4945291 4945474 -116898382 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 622 751 82 0 0 chr11 4945479 4945571 -116898285 - B1_Mus2 SINE Alu -5 142 51 1 622 635 154 36 102 chr11 4945571 4945612 -116898244 + B1_Mur1 SINE Alu 1 28 -121 1 622 1626 42 5 0 chr11 4945612 4945803 -116898053 + B2_Mm1t SINE B2 1 192 -1 1 622 635 154 36 102 chr11 4945803 4945898 -116897958 + B1_Mur1 SINE Alu 29 128 -21 1 622 250 169 56 0 chr11 4945898 4945987 -116897869 + GA-rich Low_complexity Low_complexity 3 96 0 1 622 1859 241 139 5 chr11 4946089 4946657 -116897199 + Lx8 LINE L1 6388 7031 -442 1 622 1651 179 45 10 chr11 4946688 4946998 -116896858 + MTC LTR MaLR 34 354 -67 1 622 907 43 0 9 chr11 4946997 4947113 -116896743 + B1_Mm SINE Alu 33 147 0 1 622 392 139 68 14 chr11 4947144 4947217 -116896639 + MTC LTR MaLR 331 407 0 1 622 472 277 85 30 chr11 4947217 4947370 -116896486 + B3A SINE B2 33 194 -4 1 622 446 332 70 29 chr11 4947413 4947655 -116896201 + Lx8 LINE L1 7041 7292 -181 1 622 1371 59 65 0 chr11 4947757 4947927 -116895929 + B2_Mm2 SINE B2 1 181 -14 1 622 721 238 42 28 chr11 4947967 4948179 -116895677 + B3 SINE B2 1 215 -1 1 622 331 171 0 26 chr11 4948204 4948282 -116895574 + GA-rich Low_complexity Low_complexity 2 77 0 1 622 390 185 306 0 chr11 4948489 4948597 -116895259 - B1F1 SINE Alu -6 143 3 1 622 863 106 20 7 chr11 4949209 4949326 -116894530 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 622 1205 96 0 6 chr11 4949326 4949505 -116894351 + (TCTCC)n Simple_repeat Simple_repeat 2 179 0 1 622 863 106 20 7 chr11 4949505 4949539 -116894317 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 622 805 191 21 0 chr11 4949541 4949682 -116894174 - B1_Mur2 SINE Alu -5 144 1 1 622 755 200 7 7 chr11 4949685 4949826 -116894030 - B1_Mur1 SINE Alu 0 149 9 1 622 255 226 170 70 chr11 4950473 4950485 -116893371 + MT2B LTR ERVL 155 176 -425 1 622 469 135 292 0 chr11 4950485 4950574 -116893282 + B1_Mur2 SINE Alu 1 115 -34 1 622 912 183 206 0 chr11 4950584 4950759 -116893097 + B3 SINE B2 1 211 -5 1 622 955 203 83 0 chr11 4950800 4950992 -116892864 + B3 SINE B2 2 209 -7 1 622 938 289 64 33 chr11 4950992 4951312 -116892544 - MT2A LTR ERVL -181 352 20 1 622 581 266 21 7 chr11 4951191 4951331 -116892525 - MTE2b LTR MaLR -236 143 2 1 622 27 29 0 0 chr11 4951440 4951474 -116892382 + AT_rich Low_complexity Low_complexity 1 34 0 1 622 362 293 50 10 chr11 4951589 4951689 -116892167 - PB1D10 SINE Alu -12 105 2 1 622 776 246 81 15 chr11 4951724 4951922 -116891934 - B3 SINE B2 -5 211 1 1 622 371 86 52 0 chr11 4951960 4952018 -116891838 - PB1D9 SINE Alu -59 61 1 1 622 326 224 66 19 chr11 4952018 4952072 -116891784 - B4 SINE B4 -78 142 27 1 622 595 265 41 12 chr11 4952187 4952200 -116891656 - B3A SINE B2 0 198 186 1 622 1099 75 7 14 chr11 4952200 4952348 -116891508 - B1_Mus2 SINE Alu 0 147 1 1 622 595 265 41 12 chr11 4952348 4952506 -116891350 - B3A SINE B2 -13 185 22 1 622 759 118 50 0 chr11 4952781 4952900 -116890956 + B1_Mus2 SINE Alu 23 147 0 1 622 269 254 34 0 chr11 4953073 4953132 -116890724 + ID4 SINE ID 16 76 -7 1 622 279 0 0 0 chr11 4953136 4953167 -116890689 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 622 552 198 34 8 chr11 4953170 4953287 -116890569 - PB1D9 SINE Alu 0 120 1 1 622 1242 35 7 0 chr11 4953317 4953461 -116890395 - B1_Mus2 SINE Alu -1 146 2 1 622 35 24 0 0 chr11 4953466 4953508 -116890348 + AT_rich Low_complexity Low_complexity 1 42 0 1 622 635 215 77 0 chr11 4953680 4953810 -116890046 + B1F2 SINE Alu 2 141 -8 1 622 271 311 77 10 chr11 4953832 4953936 -116889920 + PB1D10 SINE Alu 6 116 -1 1 622 1209 41 0 20 chr11 4953963 4954111 -116889745 + B1_Mus1 SINE Alu 2 146 -2 1 622 212 59 29 0 chr11 4954111 4954145 -116889711 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 622 329 213 41 41 chr11 4954234 4954332 -116889524 - B1F2 SINE Alu -51 98 1 1 622 253 252 98 45 chr11 4954332 4954346 -116889510 - B4 SINE B4 -105 187 70 1 622 237 65 0 0 chr11 4954505 4954536 -116889320 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 622 315 280 71 53 chr11 4954587 4954700 -116889156 - PB1D10 SINE Alu -2 115 1 1 622 397 264 96 15 chr11 4955077 4955257 -116888599 - L1MD3 LINE L1 -1039 6843 6652 1 622 256 192 19 0 chr11 4955346 4955398 -116888458 - MIR SINE MIR -62 200 148 1 622 223 290 109 31 chr11 4955491 4955619 -116888237 - MIRb SINE MIR -109 159 22 1 622 271 321 57 0 chr11 4956332 4956438 -116887418 + PB1D7 SINE Alu 1 112 -8 1 622 193 287 159 11 chr11 4957757 4957845 -116886011 - MIRb SINE MIR -160 108 8 1 622 576 0 0 0 chr11 4958682 4958746 -116885110 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 622 1190 61 0 7 chr11 4958757 4958905 -116884951 - B1_Mus2 SINE Alu 0 147 1 1 622 204 40 0 0 chr11 4963776 4963801 -116880055 + (CGGGA)n Simple_repeat Simple_repeat 2 26 0 1 622 406 226 57 0 chr11 4964909 4965015 -116878841 - MIR SINE MIR -116 146 35 1 622 29 28 0 0 chr11 4965246 4965282 -116878574 + GC_rich Low_complexity Low_complexity 1 36 0 1 622 205 182 0 0 chr11 4965905 4965938 -116877918 + polypurine Low_complexity Low_complexity 2 34 0 1 622 1444 64 27 0 chr11 4966024 4966211 -116877645 - B2_Mm1a SINE B2 -1 192 1 1 622 24 32 0 0 chr11 4966214 4966245 -116877611 + AT_rich Low_complexity Low_complexity 1 31 0 1 622 911 148 0 7 chr11 4966256 4966399 -116877457 - B1_Mur1 SINE Alu -2 147 6 1 622 604 243 0 57 chr11 4966262 4966419 -116877437 - ID_B1 SINE B4 -8 216 69 1 622 282 214 171 0 chr11 4966408 4966478 -116877378 - PB1D10 SINE Alu -15 102 21 1 622 263 237 191 9 chr11 4966925 4967040 -116876816 - RSINE1 SINE B4 -7 158 23 1 622 278 231 122 49 chr11 4967181 4967206 -116876650 + MIRb SINE MIR 63 87 -181 1 622 1828 158 107 196 chr11 4967206 4967835 -116876021 - RMER15 LTR ERVL 0 575 3 1 622 278 243 130 45 chr11 4967835 4967917 -116875939 + MIRb SINE MIR 81 175 -87 1 622 216 299 100 33 chr11 4968532 4968622 -116875234 - PB1D9 SINE Alu -21 99 4 1 622 271 273 77 13 chr11 4968552 4968630 -116875226 - ID_B1 SINE B4 -67 157 75 1 622 397 202 86 57 chr11 4969101 4969206 -116874650 + B1_Mur3 SINE Alu 42 149 0 1 622 1109 88 7 0 chr11 4969210 4969357 -116874499 + B1_Mus1 SINE Alu 1 148 0 1 622 22 0 0 0 chr11 4969710 4969732 -116874124 + AT_rich Low_complexity Low_complexity 1 22 0 1 622 236 196 0 0 chr11 4969838 4969889 -116873967 + A-rich Low_complexity Low_complexity 1 51 0 1 622 297 0 0 0 chr11 4970910 4970943 -116872913 + (TCCCG)n Simple_repeat Simple_repeat 2 34 0 1 622 793 243 17 68 chr11 4971796 4972030 -116871826 + ID_B1 SINE B4 3 224 0 1 622 1030 59 89 0 chr11 4972170 4972305 -116871551 + B1_Mus2 SINE Alu 1 147 0 1 622 220 100 39 20 chr11 4972306 4972357 -116871499 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1 622 228 286 32 0 chr11 4972367 4972430 -116871426 + ID2 SINE ID 2 66 -17 1 622 665 35 0 0 chr11 4973871 4973958 -116869898 + L1Md_T LINE L1 6496 6582 0 1 622 216 219 0 0 chr11 4973999 4974040 -116869816 - B3A SINE B2 -153 45 5 1 622 229 304 33 82 chr11 4974058 4974180 -116869676 + PB1D7 SINE Alu 1 116 -4 1 622 411 130 0 0 chr11 4974189 4974266 -116869590 + L1_Mus3 LINE L1 6559 6635 -3 1 622 490 257 184 32 chr11 4974386 4974571 -116869285 - B3 SINE B2 -3 213 1 1 622 755 76 244 8 chr11 4974606 4974725 -116869131 + B1_Mus1 SINE Alu 2 148 0 1 622 793 111 0 0 chr11 4974751 4974859 -116868997 + B2_Mm1t SINE B2 64 171 -22 1 622 811 192 32 6 chr11 4974813 4974970 -116868886 - B2_Mm2 SINE B2 -34 161 1 1 622 234 0 0 0 chr11 4974989 4975015 -116868841 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 622 438 252 211 32 chr11 4975026 4975182 -116868674 - B3 SINE B2 -32 184 1 1 622 526 261 206 22 chr11 4975207 4975387 -116868469 - B3 SINE B2 -3 213 1 1 622 1170 88 0 0 chr11 4975590 4975738 -116868118 - B1_Mus1 SINE Alu 0 148 1 1 622 296 289 6 0 chr11 4975738 4975842 -116868014 + B1_Mus2 SINE Alu 13 148 -1 1 622 868 174 58 0 chr11 4975845 4976017 -116867839 + B2_Mm2 SINE B2 2 183 -12 1 622 254 316 0 38 chr11 4976065 4976144 -116867712 + PB1D10 SINE Alu 1 76 -41 1 622 429 241 188 0 chr11 4976213 4976325 -116867531 + RSINE1 SINE B4 2 134 -31 1 622 1206 41 14 0 chr11 4976355 4976500 -116867356 + B1_Mus2 SINE Alu 1 147 0 1 622 22 56 0 0 chr11 4976500 4976536 -116867320 + AT_rich Low_complexity Low_complexity 1 36 0 1 622 1587 42 21 0 chr11 4976544 4976733 -116867123 + B2_Mm1a SINE B2 1 193 0 1 622 726 175 31 23 chr11 4976737 4976866 -116866990 - B1_Mur3 SINE Alu -17 132 3 1 622 507 331 24 42 chr11 4977003 4977170 -116866686 + B3A SINE B2 30 193 -5 1 622 219 284 44 22 chr11 4977319 4977409 -116866447 + RSINE1 SINE B4 72 163 -2 1 622 1427 83 5 10 chr11 4977571 4977765 -116866091 + B2_Mm1t SINE B2 1 193 0 1 622 377 218 0 37 chr11 4977806 4977887 -116865969 + PB1D9 SINE Alu 31 108 -12 1 622 195 42 0 0 chr11 4977887 4977911 -116865945 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 622 246 342 43 26 chr11 4978198 4978250 -116865606 + PB1D9 SINE Alu 1 119 -1 1 622 265 231 92 0 chr11 4978250 4978315 -116865541 + ID_B1 SINE B4 153 223 -1 1 623 180 152 0 0 chr11 4981559 4981592 -116862264 + G-rich Low_complexity Low_complexity 5 37 0 1 623 396 0 0 0 chr11 4982793 4982837 -116861019 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 623 417 216 42 59 chr11 4983670 4983788 -116860068 - PB1D10 SINE Alu 0 117 2 1 623 284 246 35 0 chr11 4984037 4984094 -116859762 - ID4 SINE ID 0 83 25 1 623 556 226 0 81 chr11 4984404 4984553 -116859303 + B1_Mus2 SINE Alu 1 137 -10 1 623 735 101 318 0 chr11 4984648 4984796 -116859060 + B2_Mm2 SINE B2 1 195 0 1 623 2185 70 90 0 chr11 4984796 4985108 -116858748 + MTB_Mm LTR MaLR 60 399 -8 1 623 216 320 40 13 chr11 4985293 4985369 -116858487 + ID4_ SINE ID 2 79 -4 1 623 1236 48 7 0 chr11 4985649 4985796 -116858060 + B1_Mus1 SINE Alu 1 148 0 1 623 598 265 109 5 chr11 4988513 4988714 -116855142 - ID_B1 SINE B4 -2 222 1 1 623 188 34 0 33 chr11 4988852 4988882 -116854974 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1 623 774 212 20 0 chr11 4989308 4989454 -116854402 - B1_Mur1 SINE Alu 0 149 1 1 623 401 232 0 24 chr11 4989641 4989725 -116854131 - ID4_ SINE ID 0 83 2 1 623 769 121 48 0 chr11 4990504 4990628 -116853228 - B1_Mur4 SINE Alu -9 141 12 1 623 376 244 64 99 chr11 4990540 4990681 -116853175 - MT2B LTR ERVL -344 257 122 1 623 454 224 106 50 chr11 4992593 4992734 -116851122 - B1_Mur3 SINE Alu 0 149 1 1 623 525 264 46 46 chr11 4992972 4993123 -116850733 - RSINE1 SINE B4 -13 152 2 1 623 415 99 269 21 chr11 4993496 4993589 -116850267 + PB1D9 SINE Alu 5 120 0 1 623 259 264 205 8 chr11 4994295 4994417 -116849439 - B1_Mm SINE Alu 0 147 2 1 623 1521 62 16 0 chr11 4994556 4994748 -116849108 + B2_Mm2 SINE B2 1 195 0 1 623 1311 93 66 0 chr11 4994873 4995055 -116848801 + B2_Mm2 SINE B2 2 195 0 1 623 823 145 43 7 chr11 4995387 4995526 -116848330 + B1_Mur2 SINE Alu 1 144 -5 1 623 1251 54 0 0 chr11 4995544 4995691 -116848165 + B1_Mus2 SINE Alu 1 147 0 1 623 663 155 145 15 chr11 4996059 4996190 -116847666 - B1_Mur4 SINE Alu -1 149 2 1 623 516 265 30 22 chr11 4996396 4996531 -116847325 - B1F2 SINE Alu -8 141 6 1 623 219 69 0 0 chr11 4996565 4996594 -116847262 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1 623 307 129 9 0 chr11 4996594 4996645 -116847211 - PB1D9 SINE Alu -13 107 55 1 623 342 0 0 0 chr11 4997006 4997044 -116846812 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 623 417 186 113 0 chr11 4997344 4997441 -116846415 - PB1D9 SINE Alu -2 118 11 1 623 286 246 0 15 chr11 5001774 5001840 -116842016 - ID_B1 SINE B4 -2 222 158 1 623 182 263 17 50 chr11 5002086 5002146 -116841710 + MIRc SINE MIR 92 149 -119 2 623 645 13 0 0 chr11 5002153 5002231 -116841625 + B2_Mm2 SINE B2 1 78 -117 3 623 908 71 8 0 chr11 5002778 5002904 -116840952 - B2_Mm2 SINE B2 -68 127 1 4 623 597 105 70 9 chr11 5002974 5003089 -116840767 + B2_Mm2 SINE B2 70 191 -4 3 623 222 330 32 19 chr11 5003616 5003763 -116840093 - MIRc SINE MIR -103 173 15 5 623 646 213 48 34 chr11 5007232 5007378 -116836478 - B1_Mur3 SINE Alu 0 149 2 6 623 465 254 26 9 chr11 5008300 5008415 -116835441 - PB1D10 SINE Alu 0 117 1 7 623 229 348 0 0 chr11 5009160 5009229 -116834627 - ID4 SINE ID -11 72 4 8 623 417 20 0 0 chr11 5010210 5010260 -116833596 + (TC)n Simple_repeat Simple_repeat 2 51 0 9 623 750 97 198 16 chr11 5010278 5010404 -116833452 - B1_Mur3 SINE Alu 0 149 1 1 623 321 26 0 0 chr11 5011844 5011882 -116831974 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 623 703 311 49 4 chr11 5011903 5012129 -116831727 - B4A SINE B4 -56 236 1 1 623 426 53 0 0 chr11 5012130 5012187 -116831669 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 623 264 273 128 13 chr11 5012207 5012285 -116831571 - B4A SINE B4 -20 272 186 1 623 212 220 60 0 chr11 5012388 5012438 -116831418 - B1F SINE Alu -70 79 27 1 623 633 275 13 72 chr11 5012719 5012816 -116831040 + ID_B1 SINE B4 2 217 -7 1 623 778 132 36 7 chr11 5012816 5012945 -116830911 + B1_Mus1 SINE Alu 8 141 -7 1 623 339 44 0 0 chr11 5012945 5012990 -116830866 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 623 266 268 175 18 chr11 5013005 5013119 -116830737 + B4A SINE B4 104 235 -57 1 623 213 205 0 0 chr11 5013121 5013160 -116830696 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 623 590 39 13 0 chr11 5013169 5013246 -116830610 + (GGGGA)n Simple_repeat Simple_repeat 4 81 0 2 623 518 247 210 30 chr11 5013257 5013424 -116830432 + B3A SINE B2 2 198 0 2 623 597 253 112 56 chr11 5013693 5013890 -116829966 - B3 SINE B2 0 216 9 2 623 389 257 109 0 chr11 5014021 5014122 -116829734 - PB1 SINE Alu -13 114 3 2 623 21 0 0 0 chr11 5014352 5014373 -116829483 + AT_rich Low_complexity Low_complexity 1 21 0 2 623 455 276 0 41 chr11 5014374 5014495 -116829361 - PB1D7 SINE Alu -1 119 4 2 623 201 74 0 0 chr11 5016654 5016681 -116827175 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 2 623 182 105 26 0 chr11 5016806 5016844 -116827012 + (CAGGG)n Simple_repeat Simple_repeat 1 39 0 2 623 879 37 0 0 chr11 5016953 5017060 -116826796 + (GGGAA)n Simple_repeat Simple_repeat 2 108 0 2 623 1385 146 0 19 chr11 5017632 5017842 -116826014 + B3 SINE B2 1 206 -10 3 623 617 240 27 14 chr11 5018030 5018213 -116825643 - B3A SINE B2 -8 187 1 3 623 1148 158 5 16 chr11 5018250 5018437 -116825419 + B2_Mm2 SINE B2 1 185 -10 3 623 550 261 7 48 chr11 5018462 5018607 -116825249 + B1F SINE Alu 10 148 -1 3 623 1213 61 0 7 chr11 5018702 5018850 -116825006 + B1_Mus2 SINE Alu 1 147 0 3 623 508 342 13 0 chr11 5018909 5019067 -116824789 + RSINE1 SINE B4 2 161 -4 3 623 564 247 227 130 chr11 5019211 5019458 -116824398 + B4A SINE B4 22 292 0 3 623 887 207 57 29 chr11 5019475 5019684 -116824172 + B3 SINE B2 2 216 0 3 623 210 304 0 14 chr11 5019695 5019765 -116824091 + PB1D10 SINE Alu 12 80 -37 3 623 636 290 84 40 chr11 5019797 5020177 -116823679 + L1MC LINE L1 2733 3129 -3017 3 623 252 268 182 23 chr11 5020244 5020332 -116823524 + ID_B1 SINE B4 116 217 -7 4 623 347 257 64 102 chr11 5020439 5020570 -116823286 + L1MC LINE L1 3204 3334 -2812 3 623 1445 70 11 16 chr11 5020570 5020758 -116823098 + B2_Mm2 SINE B2 2 188 -7 4 623 347 257 64 102 chr11 5020758 5020826 -116823030 + L1MC LINE L1 3335 3391 -2755 3 623 486 0 0 0 chr11 5020826 5020880 -116822976 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 623 267 31 0 0 chr11 5020881 5020913 -116822943 + (GTTTG)n Simple_repeat Simple_repeat 1 32 0 4 623 920 131 0 42 chr11 5020913 5021056 -116822800 - B1_Mur4 SINE Alu -13 137 1 4 623 347 257 64 102 chr11 5021056 5021116 -116822740 + L1MC LINE L1 3392 3456 -2690 3 623 242 273 12 94 chr11 5021117 5021202 -116822654 + ID4 SINE ID 3 80 -3 4 623 436 217 27 36 chr11 5021260 5021370 -116822486 + PB1D10 SINE Alu 1 109 -8 4 623 1001 102 29 0 chr11 5021440 5021577 -116822279 + B1_Mur4 SINE Alu 1 141 -9 4 623 289 278 29 183 chr11 5021680 5021953 -116821903 + RLTR15 LTR ERVK 1 231 -128 4 623 234 341 40 40 chr11 5021939 5022116 -116821740 - LTR33C LTR ERVL -134 495 319 4 623 243 116 0 104 chr11 5022090 5022138 -116821718 - PB1D9 SINE Alu -55 65 23 5 623 496 196 10 10 chr11 5022150 5022248 -116821608 + B1_Mur3 SINE Alu 52 149 0 5 623 254 125 21 0 chr11 5022249 5022297 -116821559 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 623 543 69 0 0 chr11 5022301 5022373 -116821483 + (GGA)n Simple_repeat Simple_repeat 2 73 0 5 623 412 227 77 89 chr11 5022378 5022470 -116821386 + L1MC LINE L1 4074 4155 -1991 3 623 1460 69 27 0 chr11 5022470 5022658 -116821198 + B2_Mm1t SINE B2 1 193 0 5 623 412 227 77 89 chr11 5022658 5022734 -116821122 + L1MC LINE L1 4156 4240 -1906 3 623 1244 47 0 0 chr11 5022763 5022911 -116820945 - B1_Mus1 SINE Alu 0 148 1 5 623 262 243 112 56 chr11 5023252 5023386 -116820470 + L1MC LINE L1 4247 4392 -1754 3 623 511 261 50 14 chr11 5023386 5023526 -116820330 + B1_Mur2 SINE Alu 2 146 -3 5 623 262 243 112 56 chr11 5023526 5023552 -116820304 + L1MC LINE L1 4393 4416 -1730 3 623 217 137 274 0 chr11 5023675 5023726 -116820130 + B1F1 SINE Alu 25 89 -60 5 623 353 237 61 20 chr11 5023758 5023857 -116819999 + L1M5 LINE L1 5435 5537 -642 5 623 1584 172 86 37 chr11 5023870 5024220 -116819636 + ORR1C2 LTR MaLR 6 372 -12 5 623 245 213 0 0 chr11 5024225 5024272 -116819584 + L1MD LINE L1 5545 5591 -2404 6 623 463 196 60 35 chr11 5024276 5024392 -116819464 - ID_B1 SINE B4 -6 218 100 6 623 486 61 0 0 chr11 5024400 5024466 -116819390 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 623 574 301 57 30 chr11 5024578 5024879 -116818977 + L1MEf LINE L1 1231 1539 -4703 6 623 924 142 0 7 chr11 5024885 5025020 -116818836 + B1_Mur2 SINE Alu 1 134 -15 6 623 243 218 0 35 chr11 5025161 5025218 -116818638 - PB1D10 SINE Alu -34 83 29 6 623 289 311 81 16 chr11 5025168 5025236 -116818620 - ID_B1 SINE B4 -67 157 87 6 623 965 121 23 0 chr11 5025236 5025410 -116818446 + (CTTG)n Simple_repeat Simple_repeat 1 178 0 6 623 289 311 81 16 chr11 5025410 5025465 -116818391 - ID SINE ID -138 86 27 6 623 233 346 0 0 chr11 5025411 5025489 -116818367 - ID4 SINE ID -5 78 1 6 623 388 279 36 58 chr11 5025514 5025578 -116818278 + L1MEf LINE L1 1582 1645 -4597 6 623 1049 250 150 55 chr11 5025578 5025959 -116817897 + MTD LTR MaLR 1 417 -2 6 623 388 279 36 58 chr11 5025959 5026031 -116817825 + L1MEf LINE L1 1646 1715 -4527 6 623 383 311 109 16 chr11 5026031 5026214 -116817642 - MER2 DNA MER2_type 0 345 146 7 623 498 237 37 37 chr11 5026339 5026475 -116817381 - B1F SINE Alu -8 141 6 7 623 348 307 25 51 chr11 5026475 5026490 -116817366 - ID_B1 SINE B4 -1 182 70 7 623 807 110 43 14 chr11 5026522 5026660 -116817196 + B1_Mur4 SINE Alu 8 149 -1 7 623 221 276 0 17 chr11 5026683 5026742 -116817114 + B1F1 SINE Alu 3 60 -89 7 623 422 222 0 24 chr11 5026949 5027032 -116816824 + ID4 SINE ID 3 83 0 7 623 207 69 0 0 chr11 5027081 5027110 -116816746 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 623 1662 36 5 0 chr11 5027156 5027348 -116816508 - B2_Mm1a SINE B2 0 193 1 7 623 423 147 32 0 chr11 5027348 5027437 -116816419 + CT-rich Low_complexity Low_complexity 3 94 0 7 623 826 114 0 15 chr11 5027437 5027570 -116816286 - B1_Mus2 SINE Alu 0 147 17 7 623 370 246 8 99 chr11 5027474 5027605 -116816251 - MT2B LTR ERVL -337 264 146 8 623 288 130 0 0 chr11 5027681 5027727 -116816129 + (TGG)n Simple_repeat Simple_repeat 1 46 0 8 623 313 231 0 60 chr11 5027733 5027816 -116816040 + ID4 SINE ID 5 82 -1 8 623 1107 80 0 0 chr11 5028037 5028174 -116815682 + B1_Mus2 SINE Alu 3 139 -8 8 623 300 346 12 41 chr11 5028476 5028645 -116815211 + L1MEf LINE L1 2380 2543 -3603 6 623 31 0 0 0 chr11 5030083 5030114 -116813742 + AT_rich Low_complexity Low_complexity 1 31 0 8 623 739 184 35 0 chr11 5031296 5031437 -116812419 + B1_Mur1 SINE Alu 4 149 0 8 623 412 205 7 7 chr11 5032371 5032523 -116811333 + (TG)n Simple_repeat Simple_repeat 2 153 0 8 623 851 156 0 22 chr11 5032535 5032719 -116811137 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 623 388 309 71 13 chr11 5033119 5033273 -116810583 + RSINE1 SINE B4 3 165 0 8 623 257 214 84 14 chr11 5033290 5033361 -116810495 + B4A SINE B4 81 156 -136 8 623 364 288 0 9 chr11 5033299 5033404 -116810452 + PB1D10 SINE Alu 9 112 -5 8 623 784 225 105 0 chr11 5033426 5033617 -116810239 + ID_B1 SINE B4 12 222 -2 9 623 440 189 55 11 chr11 5033724 5033815 -116810041 + B1_Mur1 SINE Alu 47 141 -8 9 623 217 332 152 67 chr11 5035669 5035879 -116807977 + MIRb SINE MIR 24 251 -17 9 623 420 130 0 0 chr11 5036574 5036643 -116807213 + (CA)n Simple_repeat Simple_repeat 1 69 0 9 623 290 263 0 0 chr11 5036832 5036889 -116806967 - ID_B1 SINE B4 -90 134 78 9 623 490 266 9 0 chr11 5036896 5037005 -116806851 - PB1D10 SINE Alu -7 110 1 9 623 773 262 87 23 chr11 5037426 5037691 -116806165 + B4A SINE B4 2 283 -9 9 623 252 318 7 90 chr11 5037728 5037873 -116805983 - RMER12 LTR ERVK -448 874 742 9 623 347 286 12 0 chr11 5037917 5038001 -116805855 + PB1D10 SINE Alu 1 85 -32 9 623 449 261 9 26 chr11 5038001 5038115 -116805741 + B3A SINE B2 10 121 -77 9 623 411 21 0 0 chr11 5038132 5038180 -116805676 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 623 423 0 0 0 chr11 5038180 5038226 -116805630 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 623 640 152 0 167 chr11 5038234 5038286 -116805570 + B3 SINE B2 1 35 -181 1 623 806 158 7 67 chr11 5038286 5038435 -116805421 - B1_Mus1 SINE Alu -8 140 1 1 623 640 152 0 167 chr11 5038435 5038532 -116805324 + B3 SINE B2 36 125 -91 1 623 357 24 0 0 chr11 5038532 5038574 -116805282 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 623 467 225 129 129 chr11 5038574 5038617 -116805239 + B2_Mm2 SINE B2 144 193 -2 1 623 312 184 25 38 chr11 5038626 5038705 -116805151 + ID4 SINE ID 2 79 -4 1 623 205 262 137 16 chr11 5041016 5041161 -116802695 + MIR SINE MIR 36 192 -84 1 623 985 162 0 13 chr11 5041817 5041967 -116801889 - B1_Mur2 SINE Alu 0 149 2 1 623 202 200 0 0 chr11 5041980 5042020 -116801836 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 623 238 339 15 0 chr11 5042626 5042691 -116801165 - ID SINE ID -151 73 8 1 623 184 254 29 29 chr11 5042701 5042770 -116801086 + MIR3 SINE MIR 88 156 -52 1 623 715 260 166 0 chr11 5043322 5043503 -116800353 + ID_B1 SINE B4 2 212 -12 1 623 328 280 52 67 chr11 5043521 5043655 -116800201 + MTEa LTR MaLR 248 379 0 1 623 198 0 0 0 chr11 5043661 5043683 -116800173 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 623 1195 41 7 7 chr11 5045145 5045292 -116798564 + B1_Mus1 SINE Alu 2 148 0 1 623 200 59 71 29 chr11 5045292 5045362 -116798494 + (CAAA)n Simple_repeat Simple_repeat 3 75 0 1 623 335 247 71 0 chr11 5045363 5045448 -116798408 - PB1D10 SINE Alu -14 103 13 1 623 192 270 126 29 chr11 5046014 5046117 -116797739 + MIRb SINE MIR 40 152 -116 1 623 267 236 84 76 chr11 5046531 5046650 -116797206 + RSINE1 SINE B4 46 165 0 1 623 273 179 0 0 chr11 5046655 5046739 -116797117 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 623 943 122 0 38 chr11 5046756 5047131 -116796725 + (CA)n Simple_repeat Simple_repeat 1 360 0 1 623 255 202 0 0 chr11 5047157 5047241 -116796615 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 623 647 223 0 37 chr11 5047248 5047383 -116796473 - B1_Mur2 SINE Alu -2 147 18 1 623 216 0 0 0 chr11 5047419 5047443 -116796413 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 623 387 0 0 0 chr11 5047908 5047951 -116795905 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 623 349 227 0 25 chr11 5048453 5048575 -116795281 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 1 623 765 233 12 30 chr11 5048579 5048743 -116795113 - RSINE1 SINE B4 -2 163 3 1 623 190 268 18 18 chr11 5048933 5048990 -116794866 + L2b LINE L2 3075 3131 -244 1 623 276 149 0 0 chr11 5051526 5051573 -116792283 + (A)n Simple_repeat Simple_repeat 1 47 0 1 623 22 35 0 0 chr11 5052297 5052326 -116791530 + GC_rich Low_complexity Low_complexity 1 29 0 1 623 375 312 8 16 chr11 5053086 5053213 -116790643 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 623 354 233 0 0 chr11 5053216 5053302 -116790554 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 1 623 494 0 33 0 chr11 5053322 5053383 -116790473 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 623 343 284 18 18 chr11 5053391 5053425 -116790431 - B1_Mur1 SINE Alu -22 127 94 1 623 387 0 0 0 chr11 5053425 5053468 -116790388 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 623 343 284 18 18 chr11 5053468 5053544 -116790312 - B1_Mur1 SINE Alu -56 93 17 1 623 233 273 14 43 chr11 5055841 5055910 -116787946 + MIR SINE MIR 108 174 -88 1 623 317 300 38 0 chr11 5056645 5056725 -116787131 + PB1D10 SINE Alu 24 106 -11 1 623 24 0 0 0 chr11 5057609 5057633 -116786223 + AT_rich Low_complexity Low_complexity 1 24 0 1 623 309 278 92 10 chr11 5057898 5057996 -116785860 + PB1D10 SINE Alu 7 112 -5 1 623 279 370 4 29 chr11 5058001 5058136 -116785720 + PB1D10 SINE Alu 1 133 -16 1 623 392 0 0 20 chr11 5058984 5059033 -116784823 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 623 24 0 0 0 chr11 5059124 5059148 -116784708 + AT_rich Low_complexity Low_complexity 1 24 0 1 623 351 0 0 0 chr11 5059399 5059438 -116784418 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 623 243 0 0 0 chr11 5059438 5059464 -116784392 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 623 224 324 0 27 chr11 5059726 5059837 -116784019 + GA-rich Low_complexity Low_complexity 5 112 0 1 623 192 298 0 0 chr11 5060282 5060339 -116783517 + MIRc SINE MIR 84 140 -128 1 623 1685 31 0 0 chr11 5060476 5060668 -116783188 + B2_Mm1a SINE B2 2 193 0 1 623 301 233 70 0 chr11 5060772 5060858 -116782998 - B1F SINE Alu -49 100 9 1 623 923 203 49 15 chr11 5061221 5061426 -116782430 + B3 SINE B2 1 212 -4 1 623 240 59 0 0 chr11 5061428 5061462 -116782394 + (T)n Simple_repeat Simple_repeat 1 34 0 1 623 1235 34 7 0 chr11 5061462 5061608 -116782248 - B1_Mus2 SINE Alu 0 147 1 1 623 383 189 22 16 chr11 5061795 5061916 -116781940 - B1_Mur1 SINE Alu 0 149 2 1 623 25 51 0 0 chr11 5062661 5062700 -116781156 + AT_rich Low_complexity Low_complexity 1 39 0 1 623 1393 89 21 16 chr11 5062700 5062894 -116780962 + B2_Mm2 SINE B2 1 195 0 1 623 826 190 7 0 chr11 5063020 5063162 -116780694 + B1_Mus2 SINE Alu 4 146 -1 1 623 265 320 10 20 chr11 5063524 5063623 -116780233 + PB1D10 SINE Alu 1 98 -19 1 623 527 273 0 0 chr11 5063805 5063926 -116779930 - ID_B1 SINE B4 0 224 104 1 623 248 295 39 0 chr11 5064561 5064639 -116779217 + L1M2 LINE L1 5567 5647 -644 1 623 783 141 84 49 chr11 5065025 5065167 -116778689 + B1_Mus1 SINE Alu 2 148 0 1 623 971 176 117 15 chr11 5065191 5065356 -116778500 + B3 SINE B2 1 186 -30 1 623 669 25 0 0 chr11 5065356 5065435 -116778421 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 623 971 176 117 15 chr11 5065435 5065465 -116778391 + B3 SINE B2 187 216 0 1 623 441 0 0 0 chr11 5065547 5065596 -116778260 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 623 255 273 114 16 chr11 5065866 5065996 -116777860 + MIR SINE MIR 23 154 -122 1 623 656 264 95 5 chr11 5066051 5066272 -116777584 - L1MB3 LINE L1 -264 5919 5679 1 623 228 277 0 0 chr11 5070495 5070542 -116773314 + tRNA-Ala-GCY_ tRNA tRNA 29 75 0 1 623 231 264 13 53 chr11 5070549 5070625 -116773231 + B4A SINE B4 220 292 0 1 623 228 242 32 0 chr11 5070675 5070737 -116773119 - MLT1D LTR MaLR -3 502 439 1 623 333 47 0 0 chr11 5070782 5070825 -116773031 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 623 286 327 30 0 chr11 5071061 5071162 -116772694 + MLT1A1 LTR MaLR 247 350 -58 1 623 219 273 108 29 chr11 5071116 5071218 -116772638 - PB1 SINE Alu -17 110 1 1 623 409 310 17 0 chr11 5071350 5071524 -116772332 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 623 217 297 95 0 chr11 5071554 5071628 -116772228 - B4A SINE B4 -210 82 2 1 623 297 211 19 87 chr11 5071630 5071734 -116772122 - B3A SINE B2 -101 97 1 1 623 752 111 87 8 chr11 5071830 5071957 -116771899 - B1_Mur1 SINE Alu -6 143 7 1 623 293 275 74 80 chr11 5072507 5072669 -116771187 + L1M4b LINE L1 28 188 -7146 1 623 1088 298 158 110 chr11 5072737 5073270 -116770586 + L1M4b LINE L1 333 895 -6439 1 623 1016 194 17 0 chr11 5073270 5073450 -116770406 + B3A SINE B2 1 183 -15 1 623 1088 298 158 110 chr11 5073450 5073907 -116769949 + L1M4b LINE L1 896 1371 -5963 1 623 522 165 20 20 chr11 5073986 5074085 -116769771 - B1_Mur4 SINE Alu -51 99 1 1 623 443 204 23 0 chr11 5074189 5074313 -116769543 + B1F SINE Alu 5 133 -16 1 623 236 234 31 15 chr11 5074700 5074765 -116769091 - ID4 SINE ID -15 68 3 1 623 508 156 29 11 chr11 5076147 5076322 -116767534 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 1 623 1008 202 115 24 chr11 5076350 5076370 -116767486 - B4A SINE B4 -2 290 272 1 623 204 40 0 0 chr11 5076370 5076395 -116767461 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 1 623 1008 202 115 24 chr11 5076395 5076627 -116767229 - B4A SINE B4 -21 271 15 1 623 243 0 0 0 chr11 5077156 5077183 -116766673 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1 623 256 329 85 46 chr11 5077259 5077412 -116766444 + LTR84b LTR ERVL 542 700 -61 1 623 873 139 251 17 chr11 5077746 5077921 -116765935 + B3 SINE B2 1 216 0 1 623 417 214 32 49 chr11 5078090 5078213 -116765643 - MER45A DNA Tip100 0 178 58 1 623 736 27 261 17 chr11 5078345 5078460 -116765396 - B1_Mm SINE Alu 0 147 5 1 623 290 87 0 21 chr11 5078614 5078661 -116765195 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 1 623 333 0 0 0 chr11 5079327 5079364 -116764492 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 623 342 0 0 0 chr11 5080621 5080659 -116763197 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 623 656 254 80 20 chr11 5080676 5080877 -116762979 + B3 SINE B2 1 213 -3 1 623 257 333 105 0 chr11 5081113 5081218 -116762638 + MTEb LTR MaLR 250 365 -14 1 623 2031 126 41 121 chr11 5081265 5081380 -116762476 + RLTR14 LTR ERV1 1 111 -271 1 623 882 115 7 67 chr11 5081380 5081529 -116762327 + B1_Mur4 SINE Alu 1 140 -10 1 623 243 0 0 0 chr11 5081530 5081557 -116762299 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 623 2031 126 41 121 chr11 5081557 5081854 -116762002 + RLTR14 LTR ERV1 112 382 0 1 623 1050 133 191 5 chr11 5082219 5082408 -116761448 + URR1B DNA MER1_type 2 225 0 1 623 579 223 63 13 chr11 5082509 5082668 -116761188 + B4A SINE B4 1 167 -125 1 623 610 229 37 25 chr11 5082684 5082845 -116761011 + RSINE1 SINE B4 3 165 0 1 623 396 100 12 24 chr11 5082865 5082947 -116760909 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 623 623 223 14 21 chr11 5083169 5083311 -116760545 + ID_B1 SINE B4 84 224 0 1 623 492 180 271 111 chr11 5083433 5083614 -116760242 + B3 SINE B2 2 211 -5 2 623 880 153 7 46 chr11 5083616 5083751 -116760105 + B1_Mus2 SINE Alu 3 134 -13 2 623 324 0 0 0 chr11 5083751 5083787 -116760069 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 623 880 153 7 46 chr11 5083787 5083802 -116760054 + B1_Mus2 SINE Alu 135 147 0 2 623 238 204 109 0 chr11 5083868 5083936 -116759920 - PB1D10 SINE Alu -40 80 1 2 623 1023 90 0 0 chr11 5084665 5084809 -116759047 + (TG)n Simple_repeat Simple_repeat 2 145 0 2 623 261 359 39 0 chr11 5084942 5085045 -116758811 + MIR SINE MIR 92 198 -64 2 623 471 35 0 0 chr11 5085233 5085290 -116758566 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 623 340 236 180 9 chr11 5085319 5085430 -116758426 - RSINE1 SINE B4 -30 135 6 2 623 308 301 110 31 chr11 5085492 5085619 -116758237 - RSINE1 SINE B4 -11 154 18 2 623 803 135 0 22 chr11 5085618 5085754 -116758102 + B1_Mur4 SINE Alu 15 147 -3 2 623 216 311 0 0 chr11 5086840 5086901 -116756955 + B4 SINE B4 27 87 -205 2 623 182 62 31 0 chr11 5087240 5087272 -116756584 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 623 466 207 371 7 chr11 5087293 5087444 -116756412 - B3 SINE B2 -9 207 2 2 623 312 268 14 0 chr11 5093992 5094063 -116749793 - ID4 SINE ID -10 73 2 2 623 276 223 167 50 chr11 5094067 5094265 -116749591 + L1M3e LINE L1 393 613 -6417 2 623 762 174 23 8 chr11 5095263 5095396 -116748460 + B1_Mur2 SINE Alu 2 136 -13 2 623 477 0 0 0 chr11 5095397 5095450 -116748406 + (CCAA)n Simple_repeat Simple_repeat 2 54 0 2 623 180 0 0 0 chr11 5096197 5096217 -116747639 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 2 623 349 295 108 8 chr11 5096660 5096790 -116747066 + Lx8 LINE L1 7136 7278 -195 2 623 352 272 126 0 chr11 5096870 5096973 -116746883 - PB1 SINE Alu -11 116 1 2 623 952 295 144 31 chr11 5097223 5097758 -116746098 + Lx8 LINE L1 6876 7471 -2 2 623 881 123 43 21 chr11 5097847 5097988 -116745868 + B1_Mur4 SINE Alu 2 145 -5 2 623 453 36 0 0 chr11 5097990 5098045 -116745811 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 623 243 261 151 52 chr11 5098550 5098676 -116745180 + MIRm SINE MIR 25 165 -111 2 623 249 219 45 143 chr11 5099878 5099894 -116743962 - BC1_Mm scRNA scRNA -50 102 2 2 623 320 298 0 21 chr11 5099894 5099909 -116743947 - RSINE1 SINE B4 -69 96 3 2 623 615 62 0 0 chr11 5099909 5099990 -116743866 - B2_Mm2 SINE B2 -113 82 2 2 623 301 326 58 29 chr11 5100051 5100190 -116743666 - B4A SINE B4 -134 158 16 2 623 539 255 35 14 chr11 5100679 5100822 -116743034 - ID_B1 SINE B4 0 224 79 2 623 476 244 143 63 chr11 5101248 5101423 -116742433 + B3A SINE B2 5 193 -5 2 623 29 0 0 0 chr11 5101425 5101454 -116742402 + AT_rich Low_complexity Low_complexity 1 29 0 2 623 332 221 39 0 chr11 5102807 5102884 -116740972 - ID2 SINE ID 0 83 4 2 623 281 267 13 0 chr11 5102941 5103016 -116740840 + PB1D10 SINE Alu 2 77 -40 2 623 407 255 56 9 chr11 5104455 5104562 -116739294 + ID_B1 SINE B4 85 196 -28 2 623 275 226 94 12 chr11 5104585 5104670 -116739186 + B3A SINE B2 1 92 -106 2 623 432 0 0 0 chr11 5104730 5104778 -116739078 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 623 539 331 131 30 chr11 5104778 5105140 -116738716 + L1MEc LINE L1 996 1395 -5005 2 623 973 131 14 0 chr11 5105140 5105285 -116738571 + B1_Mus2 SINE Alu 1 147 0 2 623 199 211 88 0 chr11 5105704 5105761 -116738095 + MIRc SINE MIR 33 94 -174 2 623 248 305 23 99 chr11 5105942 5106113 -116737743 + MLT1C LTR MaLR 88 245 -145 2 623 523 344 70 64 chr11 5106138 5106483 -116737373 + ORR1E LTR MaLR 8 354 -5 2 623 1288 321 131 28 chr11 5106526 5107344 -116736512 + ORR1E-int LTR MaLR 21 922 -658 2 623 751 200 97 0 chr11 5107345 5107510 -116736346 - B4 SINE B4 -6 286 106 2 623 1171 295 116 7 chr11 5107542 5107999 -116735857 + ORR1E-int LTR MaLR 905 1411 -169 2 623 765 213 102 17 chr11 5107997 5108174 -116735682 + B3 SINE B2 25 216 0 2 623 1291 40 0 0 chr11 5108206 5108354 -116735502 + B1_Mus1 SINE Alu 1 148 0 2 623 201 108 0 0 chr11 5108363 5108400 -116735456 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 623 1816 129 0 7 chr11 5108421 5108702 -116735154 - MTC LTR MaLR 0 421 143 2 623 407 310 46 8 chr11 5108723 5108853 -116735003 + MLT1C LTR MaLR 330 464 -3 2 623 946 209 31 118 chr11 5109361 5109671 -116734185 + RLTR18B LTR ERVK 36 426 -190 2 623 26 0 0 0 chr11 5110440 5110466 -116733390 + AT_rich Low_complexity Low_complexity 1 26 0 2 623 1036 202 67 0 chr11 5110471 5110664 -116733192 - B3 SINE B2 -10 206 1 2 623 651 256 138 26 chr11 5110688 5110877 -116732979 - B3 SINE B2 -6 210 1 2 623 499 267 53 59 chr11 5110955 5111142 -116732714 - B3 SINE B2 -15 201 16 2 623 330 308 0 0 chr11 5111192 5111283 -116732573 - B3A SINE B2 -107 91 1 2 77 394 322 121 45 chr11 5111642 5112088 -116731768 - L1M4 LINE L1 -441 5738 5259 2 624 493 261 56 0 chr11 5112095 5112237 -116731619 + MTEa LTR MaLR 117 266 -113 2 624 319 333 39 25 chr11 5112312 5112515 -116731341 - L1M4 LINE L1 -1196 4950 4745 2 624 663 280 62 48 chr11 5112715 5112925 -116730931 - MER58A DNA MER1_type -6 218 6 2 624 394 264 38 23 chr11 5113547 5113679 -116730177 - L1M4 LINE L1 -1792 4354 4221 2 624 386 287 30 0 chr11 5113865 5113966 -116729890 + PB1D10 SINE Alu 1 104 -13 2 624 234 116 0 0 chr11 5113966 5114009 -116729847 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 624 751 136 0 132 chr11 5114011 5114163 -116729693 - B1_Mur1 SINE Alu -1 148 17 2 624 236 258 212 31 chr11 5114409 5114569 -116729287 - L1MC4 LINE L1 -995 7047 6859 2 624 552 30 0 0 chr11 5115060 5115126 -116728730 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 624 303 85 0 0 chr11 5116313 5116360 -116727496 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 624 445 285 115 0 chr11 5116371 5116501 -116727355 + RSINE1 SINE B4 4 148 -17 2 624 695 218 135 26 chr11 5116703 5116870 -116726986 + B3 SINE B2 1 165 -51 2 624 384 22 0 0 chr11 5116870 5116915 -116726941 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 624 695 218 135 26 chr11 5116915 5116940 -116726916 + B3 SINE B2 166 214 -2 2 624 1203 61 0 13 chr11 5117117 5117267 -116726589 + B1_Mus1 SINE Alu 1 148 0 2 624 1009 156 6 0 chr11 5117289 5117449 -116726407 + B2_Mm2 SINE B2 1 161 -34 2 624 243 0 0 0 chr11 5117449 5117476 -116726380 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 624 735 208 27 40 chr11 5117506 5117656 -116726200 + B1_Mur2 SINE Alu 1 148 -1 2 624 638 342 61 6 chr11 5117682 5118011 -116725845 + Lx8 LINE L1 7072 7418 -55 2 624 289 272 61 9 chr11 5118048 5118163 -116725693 + L1MA6 LINE L1 5814 5934 -366 2 624 967 128 0 7 chr11 5118169 5118311 -116725545 - B1_Mur4 SINE Alu -8 142 2 2 624 435 209 102 8 chr11 5118311 5118444 -116725412 - B4 SINE B4 -65 227 81 2 624 527 317 53 18 chr11 5118463 5118633 -116725223 - B3A SINE B2 -22 176 1 2 624 228 366 34 27 chr11 5118952 5119098 -116724758 - MLT1D LTR MaLR -18 487 341 2 624 475 239 130 34 chr11 5119138 5119346 -116724510 - MLT1D LTR MaLR -277 228 1 2 624 936 324 154 19 chr11 5119582 5120101 -116723755 + MER21B LTR ERV1 102 690 -173 2 624 357 307 122 15 chr11 5120227 5120432 -116723424 + MLT1F2 LTR MaLR 34 260 -114 2 624 420 290 45 15 chr11 5120501 5120524 -116723332 + ID_B1 SINE B4 76 212 -12 2 624 640 173 45 0 chr11 5120524 5120634 -116723222 + B1_Mur2 SINE Alu 23 137 -12 2 624 274 188 0 0 chr11 5120731 5120779 -116723077 - B1F SINE Alu -5 144 97 2 624 447 366 76 31 chr11 5120813 5121101 -116722755 + MLT1F2 LTR MaLR 260 560 0 2 624 728 142 72 11 chr11 5121194 5121336 -116722520 - B3 SINE B2 -56 139 1 2 624 291 188 0 81 chr11 5122385 5122472 -116721384 - RCHARR1 DNA MER1_type -6 968 889 2 624 404 212 38 0 chr11 5122473 5122553 -116721303 + B4 SINE B4 2 84 -208 2 624 417 199 15 2 chr11 5122578 5122658 -116721198 + B4 SINE B4 144 224 -68 2 624 922 168 0 7 chr11 5122658 5122802 -116721054 + B1_Mur4 SINE Alu 2 144 -6 2 624 358 224 49 39 chr11 5122802 5122823 -116721033 + B4A SINE B4 225 246 -46 2 624 530 98 0 12 chr11 5122825 5122908 -116720948 + (GGA)n Simple_repeat Simple_repeat 3 84 0 2 624 385 294 55 0 chr11 5122913 5123022 -116720834 - B4A SINE B4 -115 177 63 2 624 1278 261 28 159 chr11 5123075 5123249 -116720607 - RCHARR1 DNA MER1_type -451 523 352 2 624 1076 141 183 0 chr11 5123249 5123440 -116720416 + URR1A DNA MER1_type 1 226 0 2 624 1278 261 28 159 chr11 5123440 5123536 -116720320 - RCHARR1 DNA MER1_type -623 351 293 2 624 213 65 0 0 chr11 5123536 5123567 -116720289 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 624 1278 261 28 159 chr11 5123567 5123897 -116719959 - RCHARR1 DNA MER1_type -682 292 1 2 624 496 311 72 7 chr11 5123902 5124054 -116719802 + RSINE1 SINE B4 3 164 -1 2 624 723 174 80 0 chr11 5124932 5125070 -116718786 - B1_Mur3 SINE Alu 0 149 1 2 624 327 245 63 45 chr11 5126503 5126614 -116717242 - PB1D10 SINE Alu 0 117 5 2 624 831 48 0 0 chr11 5126948 5127052 -116716804 + B2_Mm1t SINE B2 1 104 -89 2 624 770 40 10 19 chr11 5127051 5127142 -116716714 + B2_Mm1a SINE B2 70 160 -33 2 624 221 0 0 33 chr11 5127142 5127172 -116716684 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2 624 770 40 10 19 chr11 5127172 5127183 -116716673 + B2_Mm1a SINE B2 161 171 -22 2 624 566 233 275 34 chr11 5127230 5127491 -116716365 - MER44C DNA MER2_type 0 733 410 2 624 1476 277 76 30 chr11 5127491 5127990 -116715866 + RMER5 LTR ERV1 1 522 -12 2 624 195 317 9 65 chr11 5128229 5128337 -116715519 - MIRm SINE MIR -126 150 49 2 624 279 0 0 0 chr11 5128411 5128442 -116715414 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 624 1889 151 73 19 chr11 5128470 5128834 -116715022 + ORR1A1 LTR MaLR 1 348 -46 2 624 1239 55 0 0 chr11 5128835 5128981 -116714875 + B1_Mus2 SINE Alu 2 147 0 2 624 228 67 0 0 chr11 5128981 5129011 -116714845 + (A)n Simple_repeat Simple_repeat 1 30 0 2 624 2147 113 8 62 chr11 5129030 5129157 -116714699 + ORR1A1 LTR MaLR 1 121 -225 2 624 853 57 184 8 chr11 5129157 5129282 -116714574 + B1_Mus1 SINE Alu 1 147 -1 3 624 2147 113 8 62 chr11 5129282 5129511 -116714345 + ORR1A1 LTR MaLR 122 338 -8 2 624 798 98 0 0 chr11 5129606 5129728 -116714128 + (TG)n Simple_repeat Simple_repeat 2 123 0 3 624 279 245 186 0 chr11 5129729 5129831 -116714025 - RSINE1 SINE B4 -44 121 1 3 624 256 275 12 48 chr11 5129937 5130021 -116713835 - ID4 SINE ID -1 82 2 3 624 243 335 63 80 chr11 5130097 5130137 -116713719 + B4 SINE B4 53 223 -68 3 624 571 231 30 30 chr11 5130137 5130271 -116713585 + B1_Mur1 SINE Alu 11 144 -5 3 624 432 0 0 0 chr11 5131588 5131636 -116712220 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 624 2444 174 46 2 chr11 5132160 5132591 -116711265 + MT2A LTR ERVL 2 451 -82 3 624 341 97 0 53 chr11 5132591 5132667 -116711189 + (TCTCC)n Simple_repeat Simple_repeat 3 74 0 3 624 568 214 69 31 chr11 5132667 5132797 -116711059 - B1_Mur1 SINE Alu -5 144 10 3 624 504 0 0 0 chr11 5132858 5132914 -116710942 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3 624 1075 221 5 0 chr11 5132914 5133113 -116710743 - B3 SINE B2 -9 207 8 3 624 1318 149 14 0 chr11 5133130 5133352 -116710504 - URR1B DNA MER1_type 0 225 1 3 624 294 250 17 0 chr11 5133804 5133864 -116709992 - RSINE1 SINE B4 -103 62 2 3 624 23 33 0 0 chr11 5133876 5133906 -116709950 + AT_rich Low_complexity Low_complexity 1 30 0 3 624 281 225 54 40 chr11 5134195 5134269 -116709587 + RSINE1 SINE B4 49 123 -42 3 624 21 0 0 0 chr11 5134386 5134407 -116709449 + AT_rich Low_complexity Low_complexity 1 21 0 3 624 25 0 0 0 chr11 5134471 5134496 -116709360 + AT_rich Low_complexity Low_complexity 1 25 0 3 624 544 316 26 16 chr11 5134581 5134771 -116709085 + B3A SINE B2 2 193 -5 3 624 216 297 13 13 chr11 5134807 5134882 -116708974 - RSINE1 SINE B4 -38 127 53 3 624 445 302 0 19 chr11 5135080 5135188 -116708668 + PB1D10 SINE Alu 12 117 0 3 624 324 191 0 0 chr11 5136639 5136733 -116707123 + (CAGG)n Simple_repeat Simple_repeat 2 95 0 3 624 608 165 9 44 chr11 5136780 5136885 -116706971 + B1_Mur2 SINE Alu 40 141 -8 3 624 837 0 0 0 chr11 5136885 5136978 -116706878 + (CAAAG)n Simple_repeat Simple_repeat 2 94 0 3 624 923 163 0 0 chr11 5137077 5137218 -116706638 - B1_Mur4 SINE Alu -8 142 2 3 624 695 207 26 7 chr11 5137222 5137373 -116706483 - B3A SINE B2 -25 173 20 3 624 404 260 58 0 chr11 5137381 5137485 -116706371 - PB1D10 SINE Alu -2 115 6 3 624 1122 246 46 28 chr11 5137643 5137928 -116705928 + B4 SINE B4 1 290 -2 3 624 1071 102 7 0 chr11 5138169 5138316 -116705540 - B1_Mur4 SINE Alu -2 148 1 3 624 593 252 0 0 chr11 5138643 5138762 -116705094 + PB1D7 SINE Alu 1 119 -1 3 624 483 103 174 10 chr11 5138861 5138958 -116704898 - B1_Mur4 SINE Alu 0 150 38 3 624 380 244 93 16 chr11 5138958 5139087 -116704769 + RLTR15 LTR ERVK 1 139 -220 3 624 200 276 11 33 chr11 5139089 5139179 -116704677 + GA-rich Low_complexity Low_complexity 2 89 0 3 624 199 355 43 43 chr11 5139597 5139712 -116704144 + L3 LINE CR1 4349 4463 -26 3 624 881 244 88 20 chr11 5140849 5141100 -116702756 - B4 SINE B4 -2 290 23 3 624 450 306 31 25 chr11 5141108 5141269 -116702587 - RSINE1 SINE B4 0 165 4 3 624 1214 29 0 0 chr11 5141299 5141438 -116702418 - B1_Mus1 SINE Alu -8 140 2 3 624 629 309 10 72 chr11 5141541 5141750 -116702106 + B3A SINE B2 1 196 -2 3 624 407 336 38 8 chr11 5141883 5142015 -116701841 - ID_B1 SINE B4 -8 216 81 3 624 576 292 72 18 chr11 5142557 5142780 -116701076 - B4A SINE B4 0 292 58 3 624 318 258 45 0 chr11 5142941 5143030 -116700826 + PB1 SINE Alu 10 102 -25 3 624 987 179 69 10 chr11 5143232 5143435 -116700421 - B3 SINE B2 0 216 2 3 624 1196 48 7 0 chr11 5143463 5143609 -116700247 + B1_Mus1 SINE Alu 2 148 0 3 624 352 18 73 0 chr11 5143612 5143667 -116700189 + (CAAA)n Simple_repeat Simple_repeat 1 59 0 3 624 292 296 70 31 chr11 5145890 5146019 -116697837 + MER2 DNA MER2_type 96 229 -116 3 624 421 239 34 189 chr11 5146201 5146376 -116697480 + B1_Mur1 SINE Alu 1 148 -1 3 624 545 220 58 93 chr11 5146444 5146486 -116697370 + B3A SINE B2 1 47 -151 3 624 1211 42 14 0 chr11 5146486 5146629 -116697227 + B1_Mus1 SINE Alu 4 148 0 3 624 545 220 58 93 chr11 5146629 5146791 -116697065 + B3A SINE B2 48 198 0 3 624 610 235 6 107 chr11 5146865 5147040 -116696816 + ID_B1 SINE B4 86 247 -45 3 624 5830 58 101 12 chr11 5147162 5147961 -116695895 + L1_Mus3 LINE L1 5769 6638 0 3 624 403 289 0 129 chr11 5148061 5148200 -116695656 - ID_B1 SINE B4 0 224 104 3 624 279 133 0 0 chr11 5148264 5148309 -116695547 + (T)n Simple_repeat Simple_repeat 1 45 0 3 624 586 195 18 9 chr11 5149082 5149196 -116694660 + B1F1 SINE Alu 35 149 0 3 624 321 237 204 0 chr11 5149399 5149492 -116694364 - PB1D7 SINE Alu -1 119 8 3 624 585 150 77 19 chr11 5150106 5150233 -116693623 - B1F1 SINE Alu 0 149 15 3 624 240 130 0 0 chr11 5150318 5150364 -116693492 + (A)n Simple_repeat Simple_repeat 1 46 0 3 624 699 133 148 0 chr11 5150449 5150577 -116693279 + B1_Mus2 SINE Alu 1 147 0 3 624 192 40 0 0 chr11 5150583 5150608 -116693248 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 3 624 246 302 3 7 chr11 5150613 5150676 -116693180 + RSINE1 SINE B4 2 62 -103 3 624 351 0 0 0 chr11 5150676 5150715 -116693141 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 624 241 348 54 151 chr11 5150715 5150752 -116693104 + B4A SINE B4 50 86 -206 3 624 219 351 13 13 chr11 5150752 5150830 -116693026 + B1F2 SINE Alu 2 79 -70 3 624 1222 107 28 0 chr11 5151075 5151252 -116692604 - URR1A DNA MER1_type 0 226 45 3 624 198 67 0 0 chr11 5151841 5151852 -116692004 + (CAAAA)n Simple_repeat Simple_repeat 2 12 0 3 624 897 57 0 0 chr11 5151852 5151957 -116691899 + U6 snRNA snRNA 1 105 -2 3 624 198 67 0 0 chr11 5151957 5151975 -116691881 + (CAAAA)n Simple_repeat Simple_repeat 3 20 0 3 624 318 291 56 37 chr11 5152164 5152271 -116691585 + Lx8 LINE L1 7034 7142 -331 3 624 297 242 175 0 chr11 5152418 5152538 -116691318 + RMER15 LTR ERVL 422 562 -13 3 624 269 260 8 13 chr11 5152568 5152646 -116691210 + PB1D7 SINE Alu 30 113 -7 3 624 402 257 147 0 chr11 5152651 5152760 -116691096 + ID_B1 SINE B4 91 215 -9 3 624 288 244 62 72 chr11 5153185 5153282 -116690574 + PB1D7 SINE Alu 22 117 -32 3 624 396 270 19 39 chr11 5153362 5153466 -116690390 + PB1D10 SINE Alu 1 102 -15 3 624 594 333 61 0 chr11 5153528 5153726 -116690130 - ID_B1 SINE B4 -1 223 14 3 624 272 192 133 27 chr11 5153840 5153915 -116689941 - ID2 SINE ID 0 83 1 3 624 265 329 0 0 chr11 5154671 5154741 -116689115 + ID4 SINE ID 1 70 -13 3 624 317 283 84 30 chr11 5155010 5155141 -116688715 - ID_B1 SINE B4 0 224 87 3 624 461 131 69 35 chr11 5155169 5155256 -116688600 - B1_Mur4 SINE Alu 0 150 61 3 624 550 301 103 39 chr11 5155286 5155490 -116688366 - MER20 DNA MER1_type -2 217 1 3 624 1261 48 0 0 chr11 5157865 5158012 -116685844 + B1_Mus2 SINE Alu 1 147 0 3 624 180 0 0 0 chr11 5158030 5158050 -116685806 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 624 272 314 36 24 chr11 5158108 5158197 -116685659 - FLAM_A SINE Alu -31 96 1 3 624 269 216 78 22 chr11 5158391 5158481 -116685375 + MER58B DNA MER1_type 104 198 -143 3 624 535 215 56 0 chr11 5158480 5158587 -116685269 + B1_Mur2 SINE Alu 32 144 -5 3 624 323 289 60 17 chr11 5158617 5158733 -116685123 + MER58B DNA MER1_type 195 315 -26 3 624 1263 157 13 36 chr11 5158754 5158978 -116684878 + URR1B DNA MER1_type 7 225 0 3 624 463 119 0 0 chr11 5159408 5159475 -116684381 + B1_Mur4 SINE Alu 28 94 -56 3 624 23 0 0 0 chr11 5159972 5159995 -116683861 + AT_rich Low_complexity Low_complexity 1 23 0 3 624 269 290 90 85 chr11 5160712 5160889 -116682967 - MIRb SINE MIR -17 251 74 3 624 25 51 0 0 chr11 5161436 5161475 -116682381 + GC_rich Low_complexity Low_complexity 1 39 0 3 624 21 0 0 0 chr11 5161545 5161566 -116682290 + GC_rich Low_complexity Low_complexity 1 21 0 3 624 301 153 0 34 chr11 5161623 5161711 -116682145 + (CCCCG)n Simple_repeat Simple_repeat 4 88 0 3 624 207 289 187 11 chr11 5162175 5162266 -116681590 + MIRb SINE MIR 156 262 -6 3 624 761 172 16 8 chr11 5162380 5162509 -116681347 + B1_Mur4 SINE Alu 1 130 -20 3 624 207 225 0 0 chr11 5162519 5162559 -116681297 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 624 520 233 113 0 chr11 5162566 5162699 -116681157 - RSINE1 SINE B4 -12 153 6 3 624 550 189 50 3 chr11 5162715 5162829 -116681027 - B1_Mur2 SINE Alu -2 118 1 3 624 195 186 0 0 chr11 5162865 5162908 -116680948 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 624 222 118 0 0 chr11 5163698 5163732 -116680124 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 3 624 622 195 124 30 chr11 5164279 5164480 -116679376 + ID_B1 SINE B4 3 222 -2 3 624 381 70 0 0 chr11 5164517 5164574 -116679282 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 624 216 267 0 16 chr11 5164696 5164757 -116679099 + ID4 SINE ID 22 81 -2 3 624 188 67 33 0 chr11 5164838 5164868 -116678988 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 624 786 59 246 0 chr11 5164870 5164988 -116678868 - B1_Mus2 SINE Alu 0 147 1 4 624 696 178 101 0 chr11 5164990 5165119 -116678737 - B1_Mus2 SINE Alu 0 147 6 4 624 828 161 44 0 chr11 5165406 5165543 -116678313 + B1_Mur3 SINE Alu 1 143 -6 4 624 240 204 20 0 chr11 5165565 5165612 -116678244 - MER45A DNA Tip100 -33 145 98 4 624 241 257 129 0 chr11 5165612 5165682 -116678174 + PB1D7 SINE Alu 1 79 -41 4 624 311 318 53 15 chr11 5165680 5165811 -116678045 - MER45R DNA Tip100 -1445 136 1 4 624 311 284 69 76 chr11 5166294 5166312 -116677544 + ID_B1 SINE B4 59 120 -104 4 624 322 297 0 47 chr11 5166312 5166418 -116677438 + MT2B LTR ERVL 156 256 -345 4 624 523 238 68 15 chr11 5166329 5166461 -116677395 + B1_Mur1 SINE Alu 6 144 -5 4 624 311 284 69 76 chr11 5166418 5166439 -116677417 + ID_B1 SINE B4 121 202 -22 4 624 519 320 13 0 chr11 5166529 5166685 -116677171 + RSINE1 SINE B4 3 160 -5 4 624 517 249 260 0 chr11 5166741 5166910 -116676946 + ID_B1 SINE B4 1 213 -11 4 624 246 62 0 0 chr11 5166917 5166949 -116676907 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 4 624 260 287 74 11 chr11 5166996 5167091 -116676765 + MER96B DNA hAT 150 250 -167 4 624 286 92 21 65 chr11 5167783 5167828 -116676028 + A-rich Low_complexity Low_complexity 2 44 0 4 624 2364 80 21 0 chr11 5167828 5168200 -116675656 + L1_Mus3 LINE L1 6303 6638 0 4 624 1560 33 16 0 chr11 5168741 5168923 -116674933 + B2_Mm2 SINE B2 2 186 -9 4 624 562 331 45 0 chr11 5168964 5169118 -116674738 - RSINE1 SINE B4 -4 161 1 4 624 472 303 6 101 chr11 5169150 5169319 -116674537 - RSINE1 SINE B4 -10 155 3 4 624 551 246 154 16 chr11 5169319 5169355 -116674501 - B3 SINE B2 -1 215 177 4 624 810 163 0 22 chr11 5169355 5169493 -116674363 + B1_Mur2 SINE Alu 1 135 -14 4 624 551 246 154 16 chr11 5169493 5169514 -116674342 - B3 SINE B2 -40 176 152 4 624 396 0 0 0 chr11 5169514 5169558 -116674298 + (TATG)n Simple_repeat Simple_repeat 4 47 0 4 624 556 203 171 0 chr11 5169558 5169681 -116674175 - B3A SINE B2 -46 152 9 4 624 1171 82 0 0 chr11 5169766 5169913 -116673943 - B1_Mus1 SINE Alu 0 148 2 4 624 279 350 86 18 chr11 5170263 5170426 -116673430 + MIR SINE MIR 76 249 -13 4 624 565 294 37 32 chr11 5170564 5170754 -116673102 + B3A SINE B2 2 192 -6 4 624 241 257 28 14 chr11 5170775 5170846 -116673010 + ID4_ SINE ID 1 72 -11 4 624 454 190 27 107 chr11 5171033 5171145 -116672711 + PB1D10 SINE Alu 2 104 -16 4 624 183 254 0 73 chr11 5171187 5171255 -116672601 + L2 LINE L2 2844 2906 -513 4 624 192 40 0 0 chr11 5171986 5172011 -116671845 + L2 LINE L2 1572 1596 -1823 4 624 27 0 0 0 chr11 5172417 5172444 -116671412 + AT_rich Low_complexity Low_complexity 1 27 0 4 624 3598 130 157 81 chr11 5172469 5173124 -116670732 + RMER21B LTR ERV1 6 768 -74 4 624 1262 34 0 0 chr11 5173124 5173271 -116670585 + B1_Mm SINE Alu 1 147 0 4 624 3598 130 157 81 chr11 5173271 5173392 -116670464 + RMER21B LTR ERV1 769 841 -1 4 624 239 192 115 0 chr11 5173442 5173494 -116670362 - B3 SINE B2 -158 58 1 4 624 251 326 33 11 chr11 5174942 5175032 -116668824 + MIR SINE MIR 146 237 -25 4 624 496 239 154 0 chr11 5175839 5175956 -116667900 - B1_Mus1 SINE Alu -12 136 1 4 624 425 279 31 7 chr11 5176052 5176180 -116667676 - B1F1 SINE Alu 0 149 22 4 624 22 0 0 0 chr11 5176724 5176746 -116667110 + AT_rich Low_complexity Low_complexity 1 22 0 4 624 282 56 0 0 chr11 5177569 5177605 -116666251 + (A)n Simple_repeat Simple_repeat 1 36 0 4 624 29 70 0 0 chr11 5179336 5179393 -116664463 + AT_rich Low_complexity Low_complexity 1 57 0 4 624 459 0 0 0 chr11 5179599 5179650 -116664206 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 624 551 183 33 57 chr11 5180299 5180421 -116663435 + PB1D9 SINE Alu 2 120 0 4 624 192 346 0 36 chr11 5182762 5182846 -116661010 - MIRc SINE MIR -82 186 106 4 624 465 246 102 16 chr11 5182879 5183007 -116660849 - ID_B1 SINE B4 0 224 86 4 624 286 232 0 51 chr11 5183084 5183143 -116660713 - ID4 SINE ID -15 68 13 4 624 180 0 0 0 chr11 5183779 5183799 -116660057 + (TTAAG)n Simple_repeat Simple_repeat 1 20 0 4 624 414 200 0 0 chr11 5184032 5184107 -116659749 - B3A SINE B2 -122 76 2 4 624 996 131 47 47 chr11 5184198 5184391 -116659465 + B2_Mm2 SINE B2 3 195 0 4 624 1012 153 180 0 chr11 5184726 5184915 -116658941 + URR1B DNA MER1_type 3 225 0 4 624 734 147 189 6 chr11 5185137 5185301 -116658555 + B2_Mm2 SINE B2 2 195 0 4 624 883 163 0 21 chr11 5187175 5187319 -116656537 - B1_Mus2 SINE Alu -6 141 1 4 624 597 322 44 6 chr11 5188031 5188212 -116655644 - ID_B1 SINE B4 -28 196 9 4 624 396 59 0 0 chr11 5189262 5189313 -116654543 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 624 255 350 0 12 chr11 5189849 5189930 -116653926 + MIRb SINE MIR 91 170 -98 4 624 246 315 59 24 chr11 5190308 5190477 -116653379 + MER5B DNA MER1_type 1 175 -3 4 624 186 269 39 0 chr11 5191191 5191243 -116652613 - MIRc SINE MIR -207 61 8 4 624 257 186 34 0 chr11 5191741 5191800 -116652056 - tRNA-Ala-GCA tRNA tRNA -10 65 5 4 624 24 0 0 0 chr11 5191957 5191981 -116651875 + AT_rich Low_complexity Low_complexity 1 24 0 4 624 826 233 50 55 chr11 5191981 5192199 -116651657 + ID_B1 SINE B4 1 217 -7 4 624 834 142 64 0 chr11 5192209 5192350 -116651506 + B1_Mur4 SINE Alu 1 150 0 4 624 484 180 331 62 chr11 5193022 5193182 -116650674 - B3 SINE B2 -12 204 2 4 624 532 238 0 0 chr11 5193205 5193310 -116650546 - PB1D10 SINE Alu -1 116 12 4 624 227 202 90 56 chr11 5193252 5193341 -116650515 + YREP_Mm Unknown Unknown 250 341 -1471 4 624 785 142 14 36 chr11 5193320 5193459 -116650397 - B1_Mur2 SINE Alu -1 148 13 4 624 257 304 102 56 chr11 5194001 5194109 -116649747 - L2a LINE L2 0 3426 3314 4 624 444 289 102 0 chr11 5195046 5195174 -116648682 + B1F1 SINE Alu 9 149 0 4 624 203 176 0 0 chr11 5197535 5197569 -116646287 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 4 624 282 318 16 0 chr11 5198356 5198419 -116645437 + RSINE1 SINE B4 6 69 -96 4 624 1413 13 16 37 chr11 5199083 5199635 -116644221 + (CATCC)n Simple_repeat Simple_repeat 1 540 0 4 624 781 216 22 0 chr11 5199787 5199921 -116643935 - B3A SINE B2 -57 141 5 4 624 557 234 80 0 chr11 5200280 5200417 -116643439 - B1_Mur2 SINE Alu -1 148 1 4 624 990 78 0 0 chr11 5200429 5200570 -116643286 + (TC)n Simple_repeat Simple_repeat 1 141 0 4 624 365 259 118 7 chr11 5201436 5201572 -116642284 + B2_Mm2 SINE B2 1 151 -44 4 624 270 0 0 0 chr11 5201579 5201609 -116642247 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 624 315 0 0 0 chr11 5203323 5203358 -116640498 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 624 4990 54 5 2 chr11 5203620 5204231 -116639625 + L1Md_F2 LINE L1 5966 6578 -4 4 624 441 0 0 0 chr11 5204449 5204498 -116639358 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 624 347 324 28 19 chr11 5204514 5204621 -116639235 - RSINE1 SINE B4 -43 122 15 4 624 597 208 25 83 chr11 5204638 5204700 -116639156 - B1_Mur1 SINE Alu 0 149 92 4 624 1067 93 226 16 chr11 5204700 5204886 -116638970 + URR1B DNA MER1_type 1 225 0 4 624 597 208 25 83 chr11 5204886 5204980 -116638876 - B1_Mur1 SINE Alu -58 91 2 4 624 340 316 8 64 chr11 5205021 5205146 -116638710 - RSINE1 SINE B4 -4 161 44 4 624 829 137 16 0 chr11 5205554 5205678 -116638178 - B1_Mur4 SINE Alu -22 128 3 4 624 425 241 40 107 chr11 5205678 5205708 -116638148 - MT2B LTR ERVL -442 159 140 4 624 739 193 56 21 chr11 5205776 5205919 -116637937 - B1_Mur2 SINE Alu 0 149 2 4 624 360 0 0 0 chr11 5206359 5206399 -116637457 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 624 522 0 0 0 chr11 5206399 5206456 -116637400 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 624 261 318 15 0 chr11 5206544 5206603 -116637253 + RSINE1 SINE B4 3 62 -103 4 624 504 0 0 0 chr11 5206603 5206659 -116637197 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 624 662 257 0 35 chr11 5206803 5206944 -116636912 - RSINE1 SINE B4 -28 137 2 4 624 768 103 167 0 chr11 5207287 5207413 -116636443 - B1_Mus1 SINE Alu 0 148 2 4 624 225 257 0 65 chr11 5207445 5207489 -116636367 + ORR1B1-int LTR MaLR 611 711 -798 4 624 495 62 0 0 chr11 5207489 5207553 -116636303 + B1_Mus2 SINE Alu 1 64 -83 4 624 434 17 0 49 chr11 5207753 5207802 -116636054 + B1_Mus2 SINE Alu 90 138 -9 4 624 243 0 0 0 chr11 5207802 5207829 -116636027 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 624 434 17 0 49 chr11 5207829 5207840 -116636016 + B1_Mus2 SINE Alu 139 147 0 4 624 475 186 10 67 chr11 5207859 5207963 -116635893 + B1_Mm SINE Alu 49 146 -1 4 624 1548 221 33 6 chr11 5207973 5208306 -116635550 + Lx8 LINE L1 6773 7114 -359 4 624 285 29 0 0 chr11 5208527 5208561 -116635295 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 624 291 286 0 0 chr11 5208628 5208691 -116635165 + B1F1 SINE Alu 6 68 -81 4 624 233 338 13 26 chr11 5208691 5208703 -116635153 + B4A SINE B4 91 164 -128 4 624 252 309 43 80 chr11 5208703 5208865 -116634991 + MIRb SINE MIR 105 260 -8 4 624 475 333 44 7 chr11 5209015 5209151 -116634705 - RSINE1 SINE B4 0 165 25 4 624 332 187 181 38 chr11 5209160 5209263 -116634593 - B1F SINE Alu 0 149 2 4 624 1178 83 6 0 chr11 5209532 5209700 -116634156 + (TC)n Simple_repeat Simple_repeat 2 170 0 4 624 228 214 335 80 chr11 5209772 5209960 -116633896 + MLT1H LTR MaLR 313 548 -1 5 624 267 111 56 0 chr11 5210182 5210236 -116633620 + B2_Mm2 SINE B2 134 190 -5 5 624 180 77 0 0 chr11 5210240 5210266 -116633590 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 5 624 342 262 78 0 chr11 5210833 5210935 -116632921 - B1F1 SINE Alu 0 120 1 5 624 256 309 94 52 chr11 5212073 5212285 -116631571 + L2a LINE L2 3206 3426 0 5 624 523 218 0 43 chr11 5213143 5213258 -116630598 - B3 SINE B2 -14 202 93 5 624 22 0 0 0 chr11 5214823 5214845 -116629011 + AT_rich Low_complexity Low_complexity 1 22 0 5 624 267 286 0 0 chr11 5215263 5215368 -116628488 + A-rich Low_complexity Low_complexity 1 105 0 5 624 796 262 35 25 chr11 5215370 5215689 -116628167 + L1M4 LINE L1 5100 5423 -751 5 624 1125 55 7 40 chr11 5215835 5215986 -116627870 - B1_Mus1 SINE Alu -1 147 2 5 624 868 303 15 33 chr11 5215992 5216265 -116627591 + L1M4 LINE L1 5523 5790 -381 5 624 271 215 18 113 chr11 5217260 5217428 -116626428 + ORR1B1-int LTR MaLR 603 754 -755 5 624 950 122 0 61 chr11 5217324 5217472 -116626384 + B1_Mur3 SINE Alu 6 144 -5 5 624 189 175 0 0 chr11 5219718 5219758 -116624098 + (TTA)n Simple_repeat Simple_repeat 1 40 0 5 624 291 242 53 0 chr11 5220902 5220997 -116622859 + L1M4 LINE L1 5106 5205 -941 5 624 181 0 0 65 chr11 5220997 5221028 -116622828 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 624 768 204 0 21 chr11 5221065 5221194 -116622662 + B1F2 SINE Alu 13 140 -9 5 624 474 33 0 0 chr11 5221194 5221254 -116622602 + (CCA)n Simple_repeat Simple_repeat 3 62 0 5 624 324 276 234 22 chr11 5221264 5221401 -116622455 + L1M4 LINE L1 5365 5530 -654 5 624 360 0 0 0 chr11 5221428 5221468 -116622388 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 624 319 296 176 79 chr11 5221599 5221640 -116622216 + B4 SINE B4 43 99 -193 5 624 630 137 182 16 chr11 5221640 5221766 -116622090 + B1_Mus2 SINE Alu 1 147 0 5 624 252 143 0 20 chr11 5221886 5221936 -116621920 + B3A SINE B2 1 49 -149 5 624 576 287 20 7 chr11 5222712 5222863 -116620993 - RSINE1 SINE B4 -1 164 12 5 624 455 17 34 0 chr11 5223192 5223251 -116620605 + (CATA)n Simple_repeat Simple_repeat 3 63 0 5 624 560 228 41 81 chr11 5223912 5224084 -116619772 + RSINE1 SINE B4 1 165 0 5 624 600 111 0 0 chr11 5224126 5224216 -116619640 + (GA)n Simple_repeat Simple_repeat 2 91 0 5 624 557 154 0 37 chr11 5224576 5224684 -116619172 + B1_Mur4 SINE Alu 46 149 -1 5 624 334 150 33 0 chr11 5224774 5224834 -116619022 + B1_Mm SINE Alu 49 110 -37 5 624 426 246 58 51 chr11 5225536 5225673 -116618183 + B3 SINE B2 79 216 0 5 624 1156 63 0 0 chr11 5225690 5225832 -116618024 - B1_Mm SINE Alu -4 143 2 5 624 919 67 93 36 chr11 5225864 5225989 -116617867 + B1_Mm SINE Alu 1 138 -9 5 624 207 0 0 0 chr11 5225989 5226012 -116617844 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 624 919 67 93 36 chr11 5226012 5226025 -116617831 + B1_Mm SINE Alu 139 147 0 5 624 798 178 75 37 chr11 5226105 5226292 -116617564 + B2_Mm2 SINE B2 2 195 0 5 624 21 0 0 0 chr11 5226368 5226389 -116617467 + AT_rich Low_complexity Low_complexity 1 21 0 5 624 1009 103 0 0 chr11 5226705 5226850 -116617006 - B1_Mus1 SINE Alu 0 148 4 5 624 249 33 0 0 chr11 5227020 5227050 -116616806 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 624 431 263 78 17 chr11 5227050 5227166 -116616690 - RSINE1 SINE B4 -41 124 2 5 624 333 0 0 0 chr11 5227435 5227472 -116616384 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 624 198 71 0 0 chr11 5228017 5228045 -116615811 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 624 825 216 54 29 chr11 5228045 5228419 -116615437 + RMER6B LTR ERVK 9 461 0 5 624 1102 128 6 0 chr11 5228444 5228616 -116615240 - B2_Mm1t SINE B2 -19 174 2 5 624 330 275 153 18 chr11 5228995 5229106 -116614750 - RSINE1 SINE B4 -37 128 3 5 624 1023 243 19 9 chr11 5229464 5229676 -116614180 - B3 SINE B2 -1 215 2 5 624 526 301 85 0 chr11 5229870 5230046 -116613810 + B3A SINE B2 2 192 -6 5 624 693 173 29 22 chr11 5230317 5230453 -116613403 + B1_Mur4 SINE Alu 9 145 -5 5 624 992 63 7 0 chr11 5230787 5230929 -116612927 + B2_Mm2 SINE B2 47 189 -6 5 624 246 241 0 0 chr11 5231083 5231137 -116612719 + Lx8 LINE L1 6338 6391 -1082 5 624 467 103 7 7 chr11 5231137 5231235 -116612621 - B1_Mus2 SINE Alu -3 117 20 5 624 279 0 0 0 chr11 5231235 5231266 -116612590 + (CTG)n Simple_repeat Simple_repeat 2 32 0 5 624 2140 202 53 71 chr11 5231266 5231799 -116612057 - RMER1B Other Other -14 1052 94 5 624 1275 290 119 24 chr11 5231800 5232083 -116611773 + Lx8 LINE L1 6842 7160 -313 5 624 2935 68 32 18 chr11 5232083 5232484 -116611372 - MTB_Mm LTR MaLR 0 407 1 5 624 1275 290 119 24 chr11 5232484 5232773 -116611083 + Lx8 LINE L1 7161 7468 -5 5 624 502 243 46 18 chr11 5233047 5233156 -116610700 - B1F SINE Alu -29 120 9 5 624 435 251 88 84 chr11 5233231 5233470 -116610386 - L1MB3 LINE L1 -4 6179 5940 5 624 268 161 63 16 chr11 5233933 5233996 -116609860 + MTE2a LTR MaLR 313 378 -1 5 624 213 254 75 51 chr11 5235070 5235156 -116608700 + MIRc SINE MIR 77 161 -47 5 624 27 0 0 0 chr11 5235830 5235857 -116607999 + GC_rich Low_complexity Low_complexity 1 27 0 5 624 373 213 27 0 chr11 5236288 5236363 -116607493 - ID4 SINE ID -5 78 2 5 624 575 256 75 110 chr11 5238028 5238374 -116605482 + MER46C DNA MER2_type 1 334 -4 5 624 242 227 88 29 chr11 5238387 5238455 -116605401 - MIRm SINE MIR -125 151 80 5 624 1046 216 9 32 chr11 5238977 5239197 -116604659 + B3 SINE B2 2 216 0 5 624 1091 262 44 4 chr11 5239228 5239500 -116604356 - B4A SINE B4 -8 284 2 5 624 818 239 70 0 chr11 5240064 5240265 -116603591 + B3 SINE B2 2 216 0 5 624 1200 282 30 16 chr11 5240363 5240727 -116603129 + RMER15 LTR ERVL 190 558 -17 5 624 1091 211 9 5 chr11 5240845 5241055 -116602801 - B3 SINE B2 -4 212 2 5 624 685 154 0 0 chr11 5241116 5241220 -116602636 + PB1D9 SINE Alu 3 106 -14 5 624 468 0 0 0 chr11 5241225 5241277 -116602579 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 5 624 308 254 158 0 chr11 5241309 5241423 -116602433 + MLT1D LTR MaLR 23 154 -351 5 624 271 270 111 19 chr11 5242701 5242863 -116600993 + L1MB7 LINE L1 5875 6051 -133 5 625 207 0 0 0 chr11 5242892 5242915 -116600941 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 625 656 160 101 0 chr11 5242925 5243044 -116600812 - B1_Mur2 SINE Alu -17 132 2 5 625 288 0 0 0 chr11 5243345 5243377 -116600479 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 625 234 0 0 0 chr11 5243464 5243490 -116600366 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 625 241 282 167 14 chr11 5243514 5243586 -116600270 - PB1D10 SINE Alu -34 83 1 5 625 289 232 0 16 chr11 5244306 5244380 -116599476 + B1_Mur4 SINE Alu 47 115 -5 5 625 750 117 125 0 chr11 5244672 5244792 -116599064 - B1_Mur4 SINE Alu -15 135 1 5 625 297 236 27 27 chr11 5245429 5245503 -116598353 - Lx7 LINE L1 -982 6714 6641 5 625 553 282 32 73 chr11 5245874 5246092 -116597764 - B4A SINE B4 -60 232 24 5 625 183 244 24 0 chr11 5246897 5246938 -116596918 + L2b LINE L2 3329 3370 -5 5 625 313 302 113 14 chr11 5247297 5247438 -116596418 + HAL1 LINE L1 1685 1839 -668 5 625 841 119 7 56 chr11 5247693 5247835 -116596021 + B1_Mur3 SINE Alu 1 135 -14 5 625 312 172 0 0 chr11 5247835 5247893 -116595963 + GA-rich Low_complexity Low_complexity 4 61 0 5 625 16605 161 56 116 chr11 5248371 5248620 -116595236 + Lx5 LINE L1 1792 2163 -3717 5 625 315 0 0 0 chr11 5248620 5248655 -116595201 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 625 16605 161 56 116 chr11 5248655 5249215 -116594641 + Lx5 LINE L1 2164 2747 -3133 5 625 207 0 0 0 chr11 5249215 5249238 -116594618 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 625 16605 161 56 116 chr11 5249238 5249443 -116594413 + Lx5 LINE L1 2748 2942 -2938 5 625 462 209 35 56 chr11 5249443 5249641 -116594215 - RMER17C LTR ERVK -136 274 81 5 625 16605 161 56 116 chr11 5249641 5251918 -116591938 + Lx5 LINE L1 2943 5114 -766 5 625 953 158 20 56 chr11 5251918 5252113 -116591743 + B2_Mm2 SINE B2 2 189 -6 5 625 16605 161 56 116 chr11 5252113 5252305 -116591551 + Lx5 LINE L1 5115 5292 -588 5 625 948 104 41 14 chr11 5252305 5252451 -116591405 + B1_Mur4 SINE Alu 1 150 0 5 625 16605 161 56 116 chr11 5252451 5252552 -116591304 + Lx5 LINE L1 5293 5317 -563 5 625 3248 25 0 3 chr11 5252552 5252918 -116590938 + RLTR10B2 LTR ERVK 1 365 0 5 625 16605 228 86 75 chr11 5252918 5254492 -116589364 + Lx5 LINE L1 5318 6962 -88 5 625 1024 39 0 0 chr11 5254494 5254623 -116589233 + B1_Mus1 SINE Alu 20 148 0 5 625 488 231 0 85 chr11 5254737 5254855 -116589001 + B1_Mur2 SINE Alu 2 109 -40 5 625 262 306 0 160 chr11 5254738 5254882 -116588974 + ID_B1 SINE B4 84 204 -20 5 625 372 312 149 57 chr11 5255984 5256232 -116587624 - B4A SINE B4 -11 281 11 5 625 1147 73 85 0 chr11 5256851 5257016 -116586840 - B2_Mm2 SINE B2 -14 181 3 5 625 412 280 65 43 chr11 5258187 5258325 -116585531 + B1F SINE Alu 4 144 -5 5 625 510 114 0 0 chr11 5258500 5258579 -116585277 + (TTTTC)n Simple_repeat Simple_repeat 4 82 0 5 625 273 268 51 109 chr11 5258816 5258954 -116584902 - MT2B LTR ERVL -305 296 167 5 625 420 225 57 29 chr11 5258850 5258955 -116584901 - B1_Mur3 SINE Alu -40 109 2 5 625 544 175 144 4 chr11 5259126 5259333 -116584523 + L1MB8 LINE L1 5238 5489 -689 5 625 744 172 0 36 chr11 5259334 5259473 -116584383 + B1_Mur4 SINE Alu 16 149 -1 5 625 832 220 115 0 chr11 5259530 5259721 -116584135 + B3 SINE B2 1 213 -3 5 625 795 213 64 73 chr11 5259822 5260040 -116583816 + B3 SINE B2 1 216 0 5 625 286 242 0 0 chr11 5260178 5260240 -116583616 - B1_Mur2 SINE Alu -13 136 75 6 625 740 271 83 111 chr11 5260262 5260623 -116583233 + L1MB8 LINE L1 5673 6026 -152 5 625 439 202 158 68 chr11 5260623 5260756 -116583100 - B1_Mur2 SINE Alu -1 148 4 6 625 740 271 83 111 chr11 5260756 5260909 -116582947 + L1MB8 LINE L1 6027 6173 -5 5 625 233 322 11 33 chr11 5261038 5261128 -116582728 + Lx8 LINE L1 7056 7143 -330 6 625 330 179 90 0 chr11 5261143 5261221 -116582635 + ORR1B1 LTR MaLR 1 85 -282 6 625 2570 36 6 247 chr11 5261221 5261735 -116582121 + RLTR10 LTR ERVK 1 390 0 6 625 1539 21 126 0 chr11 5261736 5261927 -116581929 + IAPEz-int LTR ERVK 9 223 -6258 6 625 5800 30 1 20 chr11 5261925 5262616 -116581240 + IAPEz-int LTR ERVK 5804 6481 0 6 625 2944 30 0 0 chr11 5262616 5262953 -116580903 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 625 16384 27 27 1 chr11 5262963 5264851 -116579005 + RLTR10-int LTR ERVK 41 1978 -9 6 625 2570 36 6 247 chr11 5264859 5265373 -116578483 + RLTR10 LTR ERVK 1 390 0 6 625 1535 152 26 7 chr11 5265373 5265635 -116578221 + ORR1B1 LTR MaLR 122 389 -5 6 625 482 238 50 65 chr11 5266114 5266253 -116577603 + RSINE1 SINE B4 3 139 -26 6 625 22 35 0 0 chr11 5266271 5266300 -116577556 + AT_rich Low_complexity Low_complexity 1 29 0 6 625 512 135 145 38 chr11 5266305 5266436 -116577420 + B1_Mur3 SINE Alu 4 148 -1 6 625 692 302 45 23 chr11 5266974 5267238 -116576618 + LTR75 LTR ERVL 227 496 -66 6 625 1176 75 0 0 chr11 5267238 5267385 -116576471 + B1_Mus2 SINE Alu 1 147 0 6 625 183 323 32 0 chr11 5267660 5267722 -116576134 + MIR SINE MIR 167 230 -32 6 625 232 299 218 15 chr11 5267756 5267953 -116575903 - MIR SINE MIR -11 251 15 6 625 219 333 0 0 chr11 5268504 5268567 -116575289 + ID4_ SINE ID 2 64 -19 6 625 447 152 0 0 chr11 5268910 5268989 -116574867 + CT-rich Low_complexity Low_complexity 3 81 0 6 625 252 125 0 0 chr11 5269644 5269684 -116574172 + URR1B DNA MER1_type 186 225 0 6 625 254 290 204 0 chr11 5269910 5270003 -116573853 + PB1D7 SINE Alu 1 112 -8 6 625 234 253 96 48 chr11 5270055 5270138 -116573718 - PB1D7 SINE Alu -11 109 23 6 625 236 363 11 11 chr11 5270276 5270368 -116573488 - PB1D10 SINE Alu -8 109 18 6 625 3273 51 2 5 chr11 5270819 5271216 -116572640 - MTA_Mm LTR MaLR 0 396 1 6 625 660 173 110 22 chr11 5273153 5273289 -116570567 - B1_Mur4 SINE Alu 0 150 3 6 625 184 357 23 45 chr11 5273623 5273843 -116570013 - L2 LINE L2 -554 2865 2651 6 625 296 260 24 61 chr11 5274015 5274097 -116569759 - ID4_ SINE ID 0 83 5 6 625 877 169 48 26 chr11 5274205 5274248 -116569608 - B2_Mm1t SINE B2 0 193 147 6 625 671 0 13 0 chr11 5274248 5274327 -116569529 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 625 1070 83 0 0 chr11 5274327 5274472 -116569384 - B2_Mm2 SINE B2 -50 145 1 6 625 622 263 0 22 chr11 5274472 5274608 -116569248 - B1_Mur3 SINE Alu -16 133 1 6 625 27 29 0 0 chr11 5274666 5274700 -116569156 + AT_rich Low_complexity Low_complexity 1 34 0 6 625 385 211 105 75 chr11 5274702 5274835 -116569021 + B1F SINE Alu 5 141 -8 6 625 703 153 38 8 chr11 5274845 5274977 -116568879 + B1_Mur3 SINE Alu 14 149 0 6 625 223 246 16 0 chr11 5274994 5275055 -116568801 + (CAA)n Simple_repeat Simple_repeat 2 63 0 6 625 537 265 78 52 chr11 5275172 5275403 -116568453 + L1ME1 LINE L1 5372 5608 -571 6 625 198 299 0 0 chr11 5275516 5275593 -116568263 + GA-rich Low_complexity Low_complexity 1 77 0 6 625 1033 128 6 11 chr11 5275598 5275779 -116568077 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 6 625 504 259 42 116 chr11 5275794 5276078 -116567778 + L1ME1 LINE L1 5759 6021 -158 6 625 288 208 19 0 chr11 5276742 5276795 -116567061 + PB1D7 SINE Alu 56 109 -11 6 625 826 171 193 6 chr11 5277676 5277847 -116566009 + B3 SINE B2 2 204 -12 6 625 234 0 0 0 chr11 5277848 5277874 -116565982 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 6 625 315 250 45 71 chr11 5277890 5277992 -116565864 + PB1D10 SINE Alu 5 106 -11 6 625 204 40 0 0 chr11 5277992 5278017 -116565839 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 625 627 270 109 62 chr11 5278174 5278450 -116565406 - B4 SINE B4 -1 291 3 6 625 420 165 100 9 chr11 5278479 5278589 -116565267 + PB1D9 SINE Alu 1 120 0 6 625 232 154 0 25 chr11 5278696 5278736 -116565120 - B1_Mur1 SINE Alu -32 117 79 6 625 1435 94 0 5 chr11 5278866 5279058 -116564798 - B2_Mm2 SINE B2 0 195 5 6 625 21 0 0 0 chr11 5279096 5279117 -116564739 + AT_rich Low_complexity Low_complexity 1 21 0 6 625 234 262 80 6 chr11 5279122 5279212 -116564644 - B1_Mur1 SINE Alu -24 125 1 6 625 557 359 46 33 chr11 5279237 5279603 -116564253 + MLT1A LTR MaLR 3 373 -1 6 625 821 292 127 19 chr11 5281967 5282344 -116561512 - MLT1C LTR MaLR -8 459 42 6 625 909 131 149 0 chr11 5282349 5282517 -116561339 - B2_Mm2 SINE B2 -1 194 2 6 625 567 291 149 21 chr11 5283636 5283878 -116559978 - B4A SINE B4 -19 273 1 6 625 331 268 102 121 chr11 5283881 5284024 -116559832 + Charlie1a DNA MER1_type 339 499 -956 6 625 1652 26 11 0 chr11 5284024 5284214 -116559642 + B2_Mm1a SINE B2 2 193 0 6 625 331 268 102 121 chr11 5284214 5284384 -116559472 + Charlie1a DNA MER1_type 500 646 -809 6 625 1098 75 7 27 chr11 5284391 5284541 -116559315 + B1_Mus2 SINE Alu 1 147 0 6 625 341 162 15 0 chr11 5284541 5284609 -116559247 + A-rich Low_complexity Low_complexity 2 70 0 6 625 851 166 234 0 chr11 5284763 5284938 -116558918 + B3 SINE B2 1 216 0 6 625 3772 121 69 8 chr11 5284946 5285511 -116558345 + L1Md_F LINE L1 575 1176 -5440 6 625 1485 78 5 0 chr11 5285511 5285703 -116558153 + B2_Mm1t SINE B2 1 193 0 6 625 11854 99 29 19 chr11 5285703 5287572 -116556284 + L1Md_F LINE L1 1177 3064 -2819 6 625 466 182 158 8 chr11 5287699 5287826 -116556030 - B1_Mus2 SINE Alu 0 147 2 6 625 458 276 0 25 chr11 5287857 5287976 -116555880 + B3 SINE B2 1 116 -100 6 625 1180 75 0 0 chr11 5288438 5288585 -116555271 - B1_Mus2 SINE Alu 0 147 1 6 625 383 301 96 0 chr11 5288589 5288735 -116555121 - ID_B1 SINE B4 -1 223 64 6 625 1190 35 21 0 chr11 5288910 5289055 -116554801 - B1_Mus1 SINE Alu 0 148 1 6 625 1001 252 59 22 chr11 5289143 5289415 -116554441 + B4A SINE B4 10 291 -1 6 625 671 257 67 52 chr11 5290057 5290250 -116553606 + ID_B1 SINE B4 2 197 -27 6 625 216 0 0 0 chr11 5290922 5290946 -116552910 + (A)n Simple_repeat Simple_repeat 1 24 0 6 625 607 179 154 0 chr11 5292218 5292341 -116551515 + B1_Mus1 SINE Alu 1 142 -6 6 625 1180 104 68 23 chr11 5292369 5292546 -116551310 + B2_Mm2 SINE B2 1 185 -10 6 625 1224 101 89 0 chr11 5292881 5293060 -116550796 + B2_Mm2 SINE B2 1 195 0 6 625 222 62 0 0 chr11 5293176 5293208 -116550648 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 625 358 116 5 37 chr11 5293208 5293277 -116550579 - B1_Mm SINE Alu -11 136 48 6 625 599 195 0 41 chr11 5293432 5293555 -116550301 + PB1D9 SINE Alu 2 119 -1 6 625 318 67 0 0 chr11 5294435 5294480 -116549376 + (A)n Simple_repeat Simple_repeat 1 45 0 6 625 670 306 0 42 chr11 5295583 5295774 -116548082 - B3A SINE B2 -14 184 2 6 625 319 176 162 0 chr11 5295805 5295879 -116547977 + PB1D10 SINE Alu 5 90 -27 6 625 519 272 8 0 chr11 5295980 5296105 -116547751 + B4 SINE B4 83 208 -84 6 625 351 214 163 0 chr11 5296126 5296224 -116547632 + B1_Mus2 SINE Alu 1 114 -33 6 625 800 42 227 0 chr11 5296356 5296475 -116547381 + B1_Mus2 SINE Alu 2 147 0 6 625 194 0 39 0 chr11 5296487 5296513 -116547343 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 625 1133 28 28 0 chr11 5296622 5296764 -116547092 - B1_Mus1 SINE Alu -1 147 2 6 625 278 336 29 79 chr11 5296908 5297047 -116546809 + Tigger5 DNA MER2_type 43 174 -2232 6 625 274 274 119 8 chr11 5297545 5297663 -116546193 + MIRb SINE MIR 111 241 -27 6 625 362 204 29 106 chr11 5298005 5298109 -116545747 + MT2B LTR ERVL 162 257 -344 6 625 858 115 31 0 chr11 5298021 5298151 -116545705 + B1_Mur4 SINE Alu 16 149 -1 6 625 478 161 67 8 chr11 5298453 5298579 -116545277 + MER5A DNA MER1_type 24 160 -6 6 625 580 101 184 0 chr11 5300149 5300258 -116543598 + B1_Mus1 SINE Alu 19 147 -1 6 625 200 191 0 0 chr11 5300259 5300301 -116543555 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 625 466 226 90 8 chr11 5300754 5300888 -116542968 + B1_Mur2 SINE Alu 1 145 -4 6 625 201 147 0 0 chr11 5301221 5301255 -116542601 + (A)n Simple_repeat Simple_repeat 1 34 0 6 625 1386 99 5 0 chr11 5301271 5301462 -116542394 + B2_Mm1a SINE B2 2 193 0 6 625 1466 88 0 5 chr11 5301506 5301701 -116542155 - B2_Mm2 SINE B2 0 195 2 6 625 254 265 73 0 chr11 5301966 5302034 -116541822 + ID4 SINE ID 2 74 -9 6 625 1612 206 71 24 chr11 5303361 5303739 -116540117 + MTD LTR MaLR 10 405 -14 6 625 2787 231 153 45 chr11 5303752 5304884 -116538972 + MTD-int LTR MaLR 1 1254 -4 6 625 380 252 71 0 chr11 5304896 5304995 -116538861 + MTD LTR MaLR 15 120 -299 6 625 642 101 49 32 chr11 5305024 5305147 -116538709 - B1_Mur2 SINE Alu 0 149 25 6 625 405 199 26 39 chr11 5305155 5305262 -116538594 + ORR1A3-int LTR MaLR 1197 1291 -672 6 625 1141 215 63 4 chr11 5305270 5305522 -116538334 + MTD LTR MaLR 99 365 -54 6 625 488 281 0 9 chr11 5305538 5305653 -116538203 + ID_B1 SINE B4 93 206 -18 6 625 216 67 0 0 chr11 5305660 5305690 -116538166 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 6 625 233 200 0 35 chr11 5307414 5307471 -116536385 - B1F2 SINE Alu -91 58 4 6 625 688 191 30 22 chr11 5308057 5308191 -116535665 + B1_Mus2 SINE Alu 1 135 -12 6 625 726 116 0 43 chr11 5308364 5308481 -116535375 + B1_Mur4 SINE Alu 37 148 -2 6 625 363 279 26 43 chr11 5308510 5308626 -116535230 + PB1D9 SINE Alu 6 119 -1 7 625 240 319 16 65 chr11 5308680 5308804 -116535052 - PB1 SINE Alu -7 120 3 7 625 461 238 86 0 chr11 5308854 5308959 -116534897 - PB1D10 SINE Alu 0 117 4 7 625 394 258 40 90 chr11 5308991 5309006 -116534850 - B2_Mm2 SINE B2 0 195 181 7 625 1128 69 0 27 chr11 5309006 5309155 -116534701 - B1_Mus2 SINE Alu -2 145 1 7 625 394 258 40 90 chr11 5309155 5309172 -116534684 - B2_Mm2 SINE B2 -15 180 162 7 625 297 0 0 0 chr11 5309172 5309205 -116534651 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 625 666 258 40 90 chr11 5309205 5309371 -116534485 - B3 SINE B2 -46 170 6 7 625 599 265 68 6 chr11 5309468 5309631 -116534225 + B3 SINE B2 10 182 -34 7 625 303 175 0 0 chr11 5309633 5309690 -116534166 + (TATG)n Simple_repeat Simple_repeat 4 60 0 7 625 234 156 0 0 chr11 5309746 5309791 -116534065 + A-rich Low_complexity Low_complexity 1 45 0 7 625 641 205 0 8 chr11 5309812 5309935 -116533921 + B1_Mur2 SINE Alu 20 141 -8 7 625 605 165 19 10 chr11 5309946 5310050 -116533806 + PB1D9 SINE Alu 2 106 -14 7 625 580 221 48 32 chr11 5310382 5310508 -116533348 + B1_Mus2 SINE Alu 9 136 -11 7 625 234 0 0 0 chr11 5311610 5311636 -116532220 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 625 23 0 0 0 chr11 5311696 5311719 -116532137 + AT_rich Low_complexity Low_complexity 1 23 0 7 625 315 288 0 43 chr11 5312331 5312447 -116531409 - PB1D7 SINE Alu -5 115 5 7 625 248 339 23 19 chr11 5312867 5312972 -116530884 + MIRc SINE MIR 63 170 -98 7 625 309 186 230 11 chr11 5314363 5314450 -116529406 + PB1D10 SINE Alu 12 117 0 7 625 1091 72 0 7 chr11 5314520 5314660 -116529196 + B1_Mus2 SINE Alu 1 139 -8 7 625 381 235 74 56 chr11 5314693 5314855 -116529001 + MIRb SINE MIR 95 259 -9 7 625 602 207 154 65 chr11 5316485 5316686 -116527170 - ID_B1 SINE B4 -3 221 3 7 625 192 77 0 0 chr11 5316767 5316793 -116527063 + (T)n Simple_repeat Simple_repeat 1 26 0 7 625 369 0 0 0 chr11 5317287 5317328 -116526528 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 625 222 239 73 15 chr11 5317362 5317430 -116526426 + ID4 SINE ID 1 72 -11 7 625 733 117 23 0 chr11 5317697 5317825 -116526031 + L1Md_F3 LINE L1 6454 6584 0 7 625 958 124 89 11 chr11 5317987 5318166 -116525690 - B2_Mm2 SINE B2 -1 194 2 7 625 613 214 13 52 chr11 5318753 5318906 -116524950 + B1_Mur2 SINE Alu 1 147 -2 7 625 402 216 195 43 chr11 5319006 5319170 -116524686 - B2_Mm2 SINE B2 -3 192 4 7 625 797 273 96 77 chr11 5319246 5319611 -116524245 + MTEa LTR MaLR 6 377 -2 7 625 637 205 7 24 chr11 5319618 5319786 -116524070 + MLT1B LTR MaLR 211 377 -13 7 625 462 224 134 25 chr11 5319993 5320112 -116523744 + B1_Mur1 SINE Alu 13 144 -5 7 625 542 195 163 0 chr11 5321119 5321242 -116522614 + B1_Mm SINE Alu 4 146 -1 7 625 720 259 10 16 chr11 5321327 5321519 -116522337 + B3A SINE B2 8 198 0 7 625 225 0 0 0 chr11 5321568 5321593 -116522263 + (A)n Simple_repeat Simple_repeat 1 25 0 7 625 225 233 66 40 chr11 5322071 5322147 -116521709 + L1_Mur1 LINE L1 659 736 -6246 7 625 207 100 0 0 chr11 5322308 5322338 -116521518 + (A)n Simple_repeat Simple_repeat 1 30 0 7 625 300 307 134 47 chr11 5324484 5324655 -116519201 + B3A SINE B2 1 186 -12 7 625 783 206 0 0 chr11 5324664 5324800 -116519056 + B1_Mus2 SINE Alu 1 136 -11 7 625 396 0 0 0 chr11 5324800 5324844 -116519012 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 625 332 258 145 0 chr11 5325931 5326090 -116517766 - MIR SINE MIR -62 200 19 7 625 234 0 0 0 chr11 5326657 5326683 -116517173 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 625 581 171 102 8 chr11 5329021 5329139 -116514717 + ID_B1 SINE B4 88 216 -8 7 625 297 0 0 0 chr11 5329619 5329652 -116514204 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 625 465 276 94 39 chr11 5330113 5330294 -116513562 + RMER15 LTR ERVL 371 561 -14 7 625 876 124 0 116 chr11 5330591 5330755 -116513101 + B1_Mus2 SINE Alu 3 147 0 7 625 339 244 73 0 chr11 5330784 5330866 -116512990 + PB1D9 SINE Alu 1 88 -32 7 625 515 216 57 7 chr11 5331628 5331768 -116512088 + B1F1 SINE Alu 1 147 -2 7 625 1168 170 5 24 chr11 5332156 5332367 -116511489 + B3 SINE B2 2 208 -8 7 625 199 106 64 0 chr11 5333552 5333599 -116510257 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 7 625 486 263 87 103 chr11 5334252 5334447 -116509409 + B3A SINE B2 2 196 -2 7 625 653 261 22 0 chr11 5335061 5335195 -116508661 + B1F SINE Alu 3 139 -10 7 625 189 0 0 0 chr11 5335195 5335216 -116508640 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 625 668 260 29 34 chr11 5335216 5335391 -116508465 + B3 SINE B2 2 175 -41 7 625 525 16 0 0 chr11 5335391 5335453 -116508403 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 625 1150 56 28 0 chr11 5335873 5336015 -116507841 + B1_Mus1 SINE Alu 3 148 0 7 625 301 326 95 50 chr11 5336370 5336570 -116507286 + L1MC LINE L1 5544 5752 -2130 7 625 756 273 126 20 chr11 5336624 5336878 -116506978 - B4 SINE B4 -11 281 1 7 625 421 283 9 62 chr11 5338382 5338495 -116505361 - PB1 SINE Alu -20 107 1 7 625 1030 258 109 0 chr11 5338529 5338785 -116505071 - B4A SINE B4 -8 284 1 7 625 693 191 86 22 chr11 5338803 5338942 -116504914 - B1_Mus1 SINE Alu 0 148 1 7 625 375 198 12 24 chr11 5339278 5339361 -116504495 - ID4 SINE ID 0 83 2 7 625 339 271 106 37 chr11 5339574 5339735 -116504121 - MER105 DNA DNA -32 172 1 7 625 517 324 58 0 chr11 5339935 5340074 -116503782 - RSINE1 SINE B4 -15 150 4 7 625 394 267 93 38 chr11 5340311 5340494 -116503362 + MIRb SINE MIR 42 234 -34 7 625 829 0 20 0 chr11 5340495 5340596 -116503260 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 625 384 22 0 0 chr11 5341820 5341865 -116501991 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 625 200 111 0 27 chr11 5344285 5344322 -116499534 + (CCCG)n Simple_repeat Simple_repeat 4 39 0 7 625 31 0 0 0 chr11 5344525 5344556 -116499300 + GC_rich Low_complexity Low_complexity 1 31 0 7 625 383 113 0 14 chr11 5344572 5344644 -116499212 + (CGG)n Simple_repeat Simple_repeat 3 73 0 7 625 22 56 0 0 chr11 5344687 5344723 -116499133 + GC_rich Low_complexity Low_complexity 1 36 0 7 625 195 69 0 0 chr11 5346163 5346192 -116497664 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 625 1187 62 0 0 chr11 5346198 5346343 -116497513 - B1_Mus2 SINE Alu -1 146 2 7 625 255 180 20 0 chr11 5346419 5346469 -116497387 + L1M5 LINE L1 5750 5800 -379 7 625 1393 84 5 30 chr11 5346498 5346695 -116497161 + B2_Mm1t SINE B2 1 192 -1 7 625 503 264 118 31 chr11 5346798 5346993 -116496863 + L1MB7 LINE L1 5915 6126 -58 7 625 192 77 0 0 chr11 5346993 5347019 -116496837 + (TTTC)n Simple_repeat Simple_repeat 4 29 0 7 625 1150 75 0 33 chr11 5347019 5347171 -116496685 - B1_Mus1 SINE Alu 0 148 2 7 625 269 258 0 0 chr11 5347172 5347234 -116496622 + L1MB7 LINE L1 6114 6175 -9 7 625 684 207 30 0 chr11 5347257 5347392 -116496464 + B1_Mur1 SINE Alu 6 144 -5 7 625 379 210 111 0 chr11 5347411 5347492 -116496364 + B3A SINE B2 48 137 -61 7 625 183 139 0 0 chr11 5347534 5347570 -116496286 + (CAGAGA)n Simple_repeat Simple_repeat 5 40 0 7 625 833 208 97 16 chr11 5347576 5347762 -116496094 + B3 SINE B2 11 211 -5 7 625 196 259 0 53 chr11 5347832 5347889 -116495967 + L2a LINE L2 3367 3420 -6 7 625 604 280 0 8 chr11 5348080 5348213 -116495643 + RSINE1 SINE B4 2 133 -32 7 625 516 269 0 32 chr11 5348271 5348394 -116495462 - PB1D7 SINE Alu -1 119 1 7 625 255 266 43 128 chr11 5348394 5348452 -116495404 - MT2B2 LTR ERVL -435 149 106 7 625 284 147 27 93 chr11 5348570 5348645 -116495211 + ID4 SINE ID 6 75 -8 7 625 778 265 0 56 chr11 5348665 5348861 -116494995 + B3A SINE B2 14 198 0 7 625 606 243 142 11 chr11 5349446 5349629 -116494227 + B3 SINE B2 1 207 -9 7 625 1315 96 10 31 chr11 5349635 5349666 -116494190 - B2_Mm2 SINE B2 -5 190 163 7 625 324 0 0 0 chr11 5349666 5349702 -116494154 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 625 1315 96 10 31 chr11 5349702 5349863 -116493993 - B2_Mm2 SINE B2 -33 162 2 7 625 470 286 40 6 chr11 5349919 5350095 -116493761 - B3A SINE B2 -16 182 1 7 625 377 141 11 105 chr11 5350934 5351029 -116492827 - MER102c DNA MER1_type 0 331 246 7 625 680 92 34 21 chr11 5351134 5351268 -116492588 - B1_Mm SINE Alu 0 150 9 7 625 286 221 28 42 chr11 5351258 5351329 -116492527 - MER102c DNA MER1_type -147 184 115 7 625 293 289 22 11 chr11 5351329 5351404 -116492452 + polypurine Low_complexity Low_complexity 2 78 0 7 625 973 134 36 46 chr11 5351404 5351599 -116492257 + B2_Mm1a SINE B2 1 193 0 7 625 293 289 22 11 chr11 5351599 5351614 -116492242 + polypurine Low_complexity Low_complexity 79 93 0 7 625 291 264 93 42 chr11 5351680 5351823 -116492033 + MIRb SINE MIR 42 196 -72 7 625 203 304 0 0 chr11 5352708 5352764 -116491092 + CT-rich Low_complexity Low_complexity 1 56 0 7 625 316 250 125 0 chr11 5352764 5352868 -116490988 - PB1D9 SINE Alu -3 117 1 7 625 371 291 200 44 chr11 5352876 5353196 -116490660 - MLT1D LTR MaLR -5 500 131 7 625 3361 257 87 63 chr11 5353315 5354254 -116489602 + MTC-int LTR MaLR 43 1011 -247 7 625 648 45 152 9 chr11 5354254 5354366 -116489490 - L1Md_F2 LINE L1 0 6582 6455 8 625 3361 257 87 63 chr11 5354366 5354422 -116489434 + MTC-int LTR MaLR 1012 1039 -219 7 625 1121 56 21 0 chr11 5354422 5354566 -116489290 - B1_Mus2 SINE Alu 0 147 1 8 625 3361 257 87 63 chr11 5354566 5354757 -116489099 + MTC-int LTR MaLR 1040 1258 0 7 625 1121 235 103 92 chr11 5354781 5355083 -116488773 + MTD LTR MaLR 46 351 -68 8 625 1169 84 6 0 chr11 5355083 5355250 -116488606 + (TCTCC)n Simple_repeat Simple_repeat 5 172 0 8 625 1121 235 103 92 chr11 5355250 5355317 -116488539 + MTD LTR MaLR 352 419 0 8 625 447 255 20 0 chr11 5355399 5355501 -116488355 + PB1D10 SINE Alu 3 106 -11 8 625 894 108 220 6 chr11 5355733 5355892 -116487964 + B2_Mm2 SINE B2 3 195 0 8 625 998 88 73 0 chr11 5355975 5356112 -116487744 - B1_Mus1 SINE Alu 0 148 2 8 625 406 260 23 123 chr11 5356113 5356137 -116487719 + B4 SINE B4 70 216 -76 8 625 688 142 54 54 chr11 5356137 5356273 -116487583 + B1_Mur4 SINE Alu 2 140 -10 8 625 189 74 0 0 chr11 5356273 5356300 -116487556 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 625 207 0 0 0 chr11 5356343 5356366 -116487490 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 625 716 77 10 0 chr11 5356381 5356485 -116487371 + (TG)n Simple_repeat Simple_repeat 2 106 0 8 625 1115 96 6 0 chr11 5356571 5356738 -116487118 + (TG)n Simple_repeat Simple_repeat 2 169 0 8 625 1129 124 9 9 chr11 5356808 5357160 -116486696 + (TG)n Simple_repeat Simple_repeat 1 352 0 8 625 2061 145 10 0 chr11 5357160 5357464 -116486392 + RLTR27 LTR ERVK 3 309 0 8 625 266 191 0 0 chr11 5357502 5357544 -116486312 + MMERVK10C-int LTR ERVK 226 267 -7314 8 625 1917 41 23 176 chr11 5357540 5357893 -116485963 + MMERVK10C-int LTR ERVK 554 852 -1135 8 625 259 338 35 14 chr11 5358187 5358331 -116485525 + MMERVK10C-int LTR ERVK 1127 1273 -6308 8 625 7550 311 31 42 chr11 5358558 5362711 -116481145 + MMERVK10C-int LTR ERVK 1492 5599 -1982 8 625 857 330 29 35 chr11 5362953 5363547 -116480309 + MMERVK10C-int LTR ERVK 6480 7069 -512 8 625 1671 138 0 22 chr11 5363681 5363948 -116479908 + MMERVK10C-int LTR ERVK 7321 7581 0 8 625 1826 160 48 0 chr11 5363948 5364241 -116479615 + RLTR27 LTR ERVK 1 307 -2 8 625 480 48 0 0 chr11 5364241 5364304 -116479552 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 625 922 107 7 7 chr11 5364374 5364525 -116479331 + (TG)n Simple_repeat Simple_repeat 2 152 0 8 625 461 115 0 13 chr11 5364590 5364669 -116479187 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 625 999 258 18 3 chr11 5364710 5364994 -116478862 - B4 SINE B4 -4 288 1 8 625 680 166 157 51 chr11 5365048 5365226 -116478630 + B3A SINE B2 2 198 0 8 625 319 365 76 25 chr11 5365234 5365470 -116478386 + L1M5 LINE L1 5156 5403 -743 8 625 766 119 93 36 chr11 5365551 5365690 -116478166 + B1_Mus1 SINE Alu 1 147 -1 8 625 806 0 11 0 chr11 5365970 5366064 -116477792 + (TTC)n Simple_repeat Simple_repeat 1 95 0 8 625 414 57 0 0 chr11 5366121 5366174 -116477682 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 625 700 252 13 6 chr11 5366185 5366341 -116477515 - B3 SINE B2 -59 157 1 8 625 521 273 64 14 chr11 5366343 5366484 -116477372 - B4A SINE B4 -60 232 85 8 625 244 24 71 0 chr11 5366496 5366514 -116477342 + (TTCTC)n Simple_repeat Simple_repeat 3 20 0 8 625 1266 90 0 0 chr11 5366514 5366692 -116477164 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 8 625 244 24 71 0 chr11 5366692 5366715 -116477141 + (TTCTC)n Simple_repeat Simple_repeat 2 27 0 8 625 720 0 0 0 chr11 5366891 5366971 -116476885 + (TTC)n Simple_repeat Simple_repeat 1 80 0 8 625 387 0 0 0 chr11 5366971 5367014 -116476842 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 8 625 560 14 14 0 chr11 5367014 5367082 -116476774 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 8 625 728 174 17 0 chr11 5367091 5367206 -116476650 - B1_Mur2 SINE Alu -31 118 2 8 625 392 246 37 103 chr11 5367206 5367218 -116476638 - MT2B LTR ERVL -321 233 154 8 625 922 167 43 0 chr11 5367214 5367376 -116476480 - B3 SINE B2 0 216 48 8 625 891 274 19 14 chr11 5367502 5367713 -116476143 - ID_B1 SINE B4 0 224 13 8 625 260 289 37 37 chr11 5368260 5368368 -116475488 - B1F2 SINE Alu -34 115 8 8 625 1152 190 20 0 chr11 5368410 5368610 -116475246 - B3 SINE B2 -11 205 2 8 625 488 230 58 52 chr11 5368821 5368963 -116474893 - PB1D9 SINE Alu -6 143 7 8 625 1310 74 16 26 chr11 5368998 5369191 -116474665 - B2_Mm2 SINE B2 -1 194 4 8 625 373 247 28 19 chr11 5369192 5369328 -116474528 - B3A SINE B2 0 216 81 8 625 357 363 64 0 chr11 5369372 5369529 -116474327 - L1ME3A LINE L1 -273 5900 5734 8 625 453 282 0 35 chr11 5369538 5369652 -116474204 - PB1D10 SINE Alu -7 110 1 8 625 254 304 24 97 chr11 5369550 5369674 -116474182 - MT2B2 LTR ERVL -327 257 143 8 625 475 240 19 0 chr11 5369694 5369798 -116474058 + B1F1 SINE Alu 39 144 -5 8 625 563 151 32 48 chr11 5369801 5369926 -116473930 - URR1A DNA MER1_type -21 205 83 8 625 588 149 93 0 chr11 5370101 5370208 -116473648 + B1F SINE Alu 32 148 -1 8 625 296 291 0 29 chr11 5370216 5370328 -116473528 + ID4_ SINE ID 10 115 -37 8 625 553 258 46 159 chr11 5370456 5370662 -116473194 + B4A SINE B4 3 201 -91 8 625 369 86 0 0 chr11 5370662 5370720 -116473136 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 625 525 258 46 159 chr11 5370720 5370775 -116473081 + B4 SINE B4 202 241 -51 8 625 198 71 0 0 chr11 5370775 5370803 -116473053 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 625 525 258 46 159 chr11 5370803 5370867 -116472989 + B4 SINE B4 242 291 -1 8 625 555 145 0 63 chr11 5370870 5371061 -116472795 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 625 523 61 0 151 chr11 5371127 5371339 -116472517 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 625 234 116 0 0 chr11 5371374 5371417 -116472439 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 625 366 127 0 0 chr11 5371452 5371523 -116472333 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 625 189 94 0 0 chr11 5371568 5371600 -116472256 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 625 406 248 105 0 chr11 5371635 5371740 -116472116 + PB1 SINE Alu 9 124 -3 8 625 538 215 22 9 chr11 5371850 5371976 -116471880 - B1_Mur1 SINE Alu -5 144 14 8 625 3264 51 2 5 chr11 5372247 5372644 -116471212 + MTA_Mm LTR MaLR 1 396 0 8 625 7842 75 7 52 chr11 5372644 5373794 -116470062 + MTA_Mm-int LTR MaLR 1 1098 0 8 78 2460 48 199 3 chr11 5373794 5374125 -116469731 + MTA_Mm LTR MaLR 1 396 0 8 626 387 336 29 0 chr11 5374626 5374730 -116469126 - ID_B1 SINE B4 -38 186 80 8 626 314 298 100 23 chr11 5374789 5374948 -116468908 + MLT1B LTR MaLR 7 167 -207 8 626 1299 113 11 0 chr11 5374949 5375135 -116468721 + B2_Mm1t SINE B2 1 188 -5 8 626 272 279 17 51 chr11 5375351 5375468 -116468388 + MLT1B LTR MaLR 189 333 -75 8 626 694 144 170 14 chr11 5375468 5375609 -116468247 - URR1B DNA MER1_type -17 208 46 8 626 234 0 0 0 chr11 5375609 5375635 -116468221 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 626 341 327 111 26 chr11 5375635 5375861 -116467995 - B4A SINE B4 -46 246 2 8 626 1616 42 0 20 chr11 5375939 5376135 -116467721 + B2_Mm1a SINE B2 2 193 0 8 626 351 0 0 0 chr11 5376253 5376292 -116467564 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 626 1221 62 0 0 chr11 5376292 5376438 -116467418 - B1_Mus1 SINE Alu -2 146 1 8 626 277 261 82 52 chr11 5376582 5376679 -116467177 - PB1D9 SINE Alu -20 100 1 8 626 423 254 53 0 chr11 5376846 5376960 -116466896 + PB1D7 SINE Alu 1 120 0 8 626 198 0 0 0 chr11 5377117 5377139 -116466717 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 626 381 333 24 8 chr11 5377207 5377331 -116466525 + ID_B1 SINE B4 64 189 -35 8 626 262 291 12 12 chr11 5377808 5377888 -116465968 - MLT1J LTR MaLR -203 309 230 8 626 2269 163 28 41 chr11 5378070 5378538 -116465318 - RLTR16 LTR ERVK -43 462 1 8 626 1076 96 82 33 chr11 5378684 5378867 -116464989 + B2_Mm2 SINE B2 4 195 0 8 626 339 270 143 9 chr11 5378894 5379006 -116464850 + RSINE1 SINE B4 3 129 -36 8 626 492 260 148 42 chr11 5378974 5379163 -116464693 - ID_B1 SINE B4 -15 209 1 8 626 629 261 108 65 chr11 5379484 5379763 -116464093 - B4A SINE B4 0 292 2 8 626 248 232 0 0 chr11 5379854 5379923 -116463933 + (TAA)n Simple_repeat Simple_repeat 1 69 0 8 626 1389 81 27 0 chr11 5380079 5380265 -116463591 - B2_Mm2 SINE B2 -4 191 1 8 626 262 169 169 0 chr11 5380560 5380625 -116463231 + ID_B1 SINE B4 15 90 -134 8 626 1063 204 9 19 chr11 5380629 5380839 -116463017 + B3 SINE B2 4 211 -5 8 626 192 77 0 0 chr11 5380847 5380873 -116462983 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 626 826 150 0 22 chr11 5380951 5381087 -116462769 + B1_Mus2 SINE Alu 14 146 -1 8 626 223 100 0 74 chr11 5381118 5381172 -116462684 + (CGGGG)n Simple_repeat Simple_repeat 5 54 0 8 626 577 285 8 0 chr11 5381449 5381579 -116462277 - ID_B1 SINE B4 -20 204 74 8 626 269 338 0 0 chr11 5381593 5381664 -116462192 + MLT1A1 LTR MaLR 55 125 -283 8 626 530 338 102 54 chr11 5381852 5381873 -116461983 - MT2A LTR ERVL -3 530 511 8 626 912 177 154 15 chr11 5381873 5382068 -116461788 - URR1A DNA MER1_type 0 226 5 8 626 530 338 102 54 chr11 5382068 5382320 -116461536 - MT2A LTR ERVL -23 510 247 8 626 1325 210 278 50 chr11 5382320 5382781 -116461075 + RMER2 LTR ERV1 2 567 0 8 626 530 338 102 54 chr11 5382781 5382947 -116460909 - MT2A LTR ERVL -287 246 69 8 626 226 263 116 25 chr11 5382880 5383001 -116460855 - MTE2a LTR MaLR -242 137 6 8 626 511 223 50 57 chr11 5383175 5383318 -116460538 + B1_Mur2 SINE Alu 10 148 -1 8 626 214 310 35 0 chr11 5383635 5383722 -116460134 + PB1D7 SINE Alu 29 118 -2 8 626 252 86 0 0 chr11 5383776 5383811 -116460045 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 8 626 623 252 0 0 chr11 5383830 5383945 -116459911 + ID_B1 SINE B4 106 220 -4 8 626 509 246 0 9 chr11 5384114 5384229 -116459627 - PB1D9 SINE Alu -4 116 3 8 626 447 289 20 17 chr11 5384303 5384470 -116459386 - RSINE1 SINE B4 -122 170 3 8 626 360 0 0 0 chr11 5385102 5385142 -116458714 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 8 626 711 245 29 83 chr11 5385161 5385366 -116458490 + B3A SINE B2 2 195 -3 8 626 225 0 0 0 chr11 5385553 5385578 -116458278 + (A)n Simple_repeat Simple_repeat 1 25 0 8 626 205 88 29 0 chr11 5385591 5385625 -116458231 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 626 282 56 0 0 chr11 5386376 5386412 -116457444 + (TA)n Simple_repeat Simple_repeat 1 36 0 8 626 406 0 18 18 chr11 5386577 5386632 -116457224 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 8 626 764 216 56 31 chr11 5386633 5386829 -116457027 - B3 SINE B2 -15 201 1 9 626 974 86 48 41 chr11 5386952 5387098 -116456758 - B1_Mus1 SINE Alu 0 148 2 9 626 407 260 39 20 chr11 5387140 5387242 -116456614 - PB1D7 SINE Alu -16 104 1 9 626 647 65 0 11 chr11 5387370 5387464 -116456392 + (TG)n Simple_repeat Simple_repeat 1 93 0 9 626 574 250 18 0 chr11 5387464 5387576 -116456280 - RSINE1 SINE B4 -24 141 28 9 626 214 109 65 0 chr11 5387679 5387725 -116456131 + C-rich Low_complexity Low_complexity 3 51 0 9 626 520 248 38 0 chr11 5387731 5387836 -116456020 - B1_Mur1 SINE Alu -40 109 1 9 626 320 323 128 0 chr11 5387836 5387858 -116455998 - B4 SINE B4 -88 178 55 9 626 271 294 0 0 chr11 5387877 5387945 -116455911 - ID4_ SINE ID -11 72 5 9 626 1239 175 10 0 chr11 5388129 5388335 -116455521 + B3 SINE B2 1 208 -8 9 626 618 202 165 22 chr11 5388351 5388533 -116455323 - B3 SINE B2 -6 210 3 9 626 323 249 89 47 chr11 5388560 5388729 -116455127 - L1MB8 LINE L1 -6 6172 5997 9 626 665 276 9 58 chr11 5388931 5389154 -116454702 - ID_B1 SINE B4 -11 213 2 9 626 252 0 0 0 chr11 5389252 5389280 -116454576 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 626 447 227 10 20 chr11 5389283 5389382 -116454474 - RSINE1 SINE B4 0 165 68 9 626 435 292 149 61 chr11 5389405 5389733 -116454123 - RLTR15 LTR ERVK -51 477 48 9 626 278 217 0 0 chr11 5389807 5389853 -116454003 - RSINE1 SINE B4 -83 82 37 9 626 329 305 88 44 chr11 5389931 5390068 -116453788 - B4A SINE B4 -148 144 2 9 626 213 276 0 17 chr11 5390084 5390143 -116453713 + B4A SINE B4 85 142 -150 9 626 457 248 26 34 chr11 5390090 5390207 -116453649 + PB1D9 SINE Alu 5 120 0 9 626 396 236 26 35 chr11 5390345 5390366 -116453490 - ID_B1 SINE B4 0 224 207 9 626 479 259 55 74 chr11 5390366 5390583 -116453273 + B3 SINE B2 2 214 -2 9 626 396 236 26 35 chr11 5390583 5390675 -116453181 - ID_B1 SINE B4 -18 206 112 9 626 425 212 15 48 chr11 5390614 5390748 -116453108 - PB1 SINE Alu -23 126 10 9 626 216 67 0 0 chr11 5390756 5390786 -116453070 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 9 626 1438 235 30 30 chr11 5390786 5391159 -116452697 - ORR1D1 LTR MaLR -1 373 1 9 626 299 245 67 83 chr11 5391428 5391548 -116452308 + PB1D7 SINE Alu 1 118 -2 9 626 322 147 127 42 chr11 5391548 5391619 -116452237 + ID2 SINE ID 2 78 -5 9 626 1159 59 66 0 chr11 5391657 5391809 -116452047 + B2_Mm2 SINE B2 1 162 -33 9 626 718 286 42 21 chr11 5392326 5392519 -116451337 - ID_B1 SINE B4 -12 212 16 9 626 1135 109 172 0 chr11 5392536 5392728 -116451128 - URR1A DNA MER1_type 0 226 2 9 626 570 171 11 22 chr11 5393001 5393181 -116450675 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 626 399 165 28 0 chr11 5393211 5393320 -116450536 + (TG)n Simple_repeat Simple_repeat 1 112 0 9 626 210 281 9 160 chr11 5393370 5393476 -116450380 - B4A SINE B4 -153 139 50 9 626 1650 31 11 0 chr11 5393490 5393681 -116450175 - B2_Mm1a SINE B2 0 193 1 9 626 23 33 0 0 chr11 5393735 5393765 -116450091 + AT_rich Low_complexity Low_complexity 1 30 0 9 626 957 195 41 0 chr11 5393768 5393963 -116449893 - B3 SINE B2 -11 205 3 9 626 312 313 61 0 chr11 5394017 5394132 -116449724 - RSINE1 SINE B4 -29 136 15 9 626 271 324 141 38 chr11 5394203 5394466 -116449390 + B4 SINE B4 2 291 -1 9 626 24 0 0 0 chr11 5394494 5394518 -116449338 + AT_rich Low_complexity Low_complexity 1 24 0 9 626 1493 60 5 0 chr11 5394654 5394838 -116449018 + B2_Mm1t SINE B2 1 185 -8 9 626 198 0 0 0 chr11 5394878 5394900 -116448956 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 626 299 247 161 0 chr11 5395097 5395178 -116448678 + PB1D7 SINE Alu 27 120 0 9 626 1244 136 74 59 chr11 5395492 5395601 -116448255 - MT2B2 LTR ERVL -77 398 264 9 626 2386 116 18 102 chr11 5395601 5396041 -116447815 + RLTR9D LTR ERVK 1 403 0 9 626 1244 130 49 40 chr11 5396041 5396187 -116447669 - MT2B2 LTR ERVL -264 320 172 9 626 360 318 86 79 chr11 5396506 5396810 -116447046 - MLT2C1 LTR ERVL -27 370 65 9 626 616 196 111 47 chr11 5397011 5397182 -116446674 - B3 SINE B2 -33 183 2 9 626 1239 122 16 5 chr11 5397273 5397462 -116446394 - B2_Mm2 SINE B2 -4 191 1 9 626 512 248 0 52 chr11 5397666 5397781 -116446075 - ID_B1 SINE B4 -36 188 80 9 626 450 265 29 10 chr11 5397778 5397881 -116445975 - B1F1 SINE Alu -8 141 37 9 626 882 204 44 24 chr11 5398249 5398455 -116445401 + ID_B1 SINE B4 2 211 -13 9 626 305 308 85 0 chr11 5399942 5400072 -116443784 - ID_B1 SINE B4 -2 222 82 9 626 320 219 68 75 chr11 5400108 5400241 -116443615 + B1F SINE Alu 1 132 -17 9 626 235 250 33 16 chr11 5400550 5400611 -116443245 + L2c LINE L2 3098 3159 -228 9 626 482 233 34 78 chr11 5400675 5400826 -116443030 + B1F SINE Alu 1 143 -6 9 626 182 204 43 0 chr11 5400842 5400935 -116442921 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 626 273 193 24 24 chr11 5400962 5401047 -116442809 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 626 376 225 0 0 chr11 5401056 5401127 -116442729 + ID2 SINE ID 13 83 0 9 626 337 262 11 56 chr11 5401127 5401145 -116442711 + ID_B1 SINE B4 13 97 -127 9 626 375 273 17 68 chr11 5401491 5401609 -116442247 + B3A SINE B2 87 198 0 9 626 568 207 95 0 chr11 5401688 5401804 -116442052 + ID_B1 SINE B4 90 216 -8 9 626 803 224 0 13 chr11 5401850 5402008 -116441848 + B4 SINE B4 70 225 -67 9 626 832 196 184 0 chr11 5402019 5402198 -116441658 + B3 SINE B2 5 216 0 9 626 260 256 57 45 chr11 5402533 5402689 -116441167 - MIRc SINE MIR -107 155 4 9 626 684 205 8 8 chr11 5403108 5403231 -116440625 + B1_Mur2 SINE Alu 15 137 -12 9 626 213 39 0 0 chr11 5403231 5403257 -116440599 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 9 626 879 134 30 7 chr11 5403281 5403416 -116440440 + B1_Mur4 SINE Alu 2 139 -11 9 626 186 43 0 0 chr11 5403416 5403439 -116440417 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 626 1184 55 14 0 chr11 5403467 5403613 -116440243 - B1_Mus1 SINE Alu 0 148 1 9 626 1157 204 8 57 chr11 5403690 5403934 -116439922 + ORR1D1 LTR MaLR 1 232 -142 9 626 3315 101 90 0 chr11 5403938 5404636 -116439220 - L1VL1 LINE L1 -4114 1769 1071 9 626 705 229 7 0 chr11 5404636 5404928 -116438928 + (TATG)n Simple_repeat Simple_repeat 1 293 0 9 626 284 268 22 115 chr11 5404929 5405068 -116438788 - RSINE1 SINE B4 0 165 40 9 626 270 0 0 0 chr11 5405142 5405172 -116438684 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 626 634 277 11 50 chr11 5405218 5405400 -116438456 - B3 SINE B2 -40 176 2 9 626 664 118 0 29 chr11 5405641 5405759 -116438097 + B1_Mur3 SINE Alu 42 147 0 9 626 216 0 0 0 chr11 5405780 5405804 -116438052 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 626 356 252 14 17 chr11 5406122 5406250 -116437606 + ID4 SINE ID 3 129 -23 9 626 1621 32 0 21 chr11 5406567 5406760 -116437096 + B2_Mm1a SINE B2 1 189 -4 9 626 221 57 0 28 chr11 5406772 5406808 -116437048 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 626 256 307 152 55 chr11 5406833 5406978 -116436878 + RSINE1 SINE B4 3 161 -4 9 626 926 143 7 7 chr11 5407062 5407210 -116436646 - B1_Mus1 SINE Alu 0 148 1 9 626 445 215 13 0 chr11 5407515 5407594 -116436262 - PB1D7 SINE Alu -17 103 24 9 626 198 0 0 0 chr11 5407604 5407626 -116436230 + (T)n Simple_repeat Simple_repeat 1 22 0 9 626 509 34 135 0 chr11 5408314 5408403 -116435453 - L1Md_F3 LINE L1 0 6584 6484 9 626 488 236 61 27 chr11 5408424 5408572 -116435284 + RSINE1 SINE B4 2 154 -11 9 626 310 254 58 5 chr11 5408666 5408755 -116435101 - PB1D10 SINE Alu -22 127 35 9 626 209 108 0 26 chr11 5408826 5408864 -116434992 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 9 626 384 274 25 74 chr11 5409130 5409252 -116434604 + MER20 DNA MER1_type 100 215 -4 9 626 511 255 69 186 chr11 5409305 5409623 -116434233 + B4A SINE B4 1 281 -11 9 626 248 264 108 108 chr11 5410048 5410214 -116433642 - MLT1J LTR MaLR -112 400 235 9 626 242 323 48 48 chr11 5410271 5410375 -116433481 - MLT1J LTR MaLR -309 203 100 9 626 885 100 0 0 chr11 5410692 5410822 -116433034 + (GGGA)n Simple_repeat Simple_repeat 1 130 0 9 626 2172 118 36 251 chr11 5410895 5411508 -116432348 + RLTR28B LTR ERVL 1 481 0 9 626 577 239 74 7 chr11 5411660 5411795 -116432061 - ID_B1 SINE B4 0 224 81 9 626 1036 233 0 0 chr11 5411821 5412027 -116431829 - B3 SINE B2 -5 211 6 9 626 649 281 111 32 chr11 5412397 5412801 -116431055 + MER31B LTR ERV1 1 466 0 9 626 21 0 0 0 chr11 5412847 5412868 -116430988 + AT_rich Low_complexity Low_complexity 1 21 0 9 626 674 248 56 79 chr11 5413049 5413264 -116430592 - ID_B1 SINE B4 0 224 15 9 626 436 179 11 45 chr11 5413778 5413866 -116429990 - B1_Mur4 SINE Alu -64 86 2 9 626 698 227 5 113 chr11 5414019 5414253 -116429603 + B4A SINE B4 86 292 0 9 626 597 141 0 0 chr11 5414462 5414561 -116429295 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 9 626 598 275 93 22 chr11 5414620 5414802 -116429054 + B3A SINE B2 1 195 -3 9 626 247 111 0 0 chr11 5414871 5414907 -116428949 + B1_Mur2 SINE Alu 104 139 -10 9 626 342 300 69 43 chr11 5414924 5415112 -116428744 + L1MC4 LINE L1 6566 6758 -1284 9 626 279 250 28 0 chr11 5415146 5415218 -116428638 + L1MC4 LINE L1 6732 6805 -1237 9 626 741 217 14 0 chr11 5415360 5415503 -116428353 + B1F1 SINE Alu 5 149 0 9 626 571 213 233 11 chr11 5415506 5415682 -116428174 + B3 SINE B2 1 215 -1 1 626 232 269 25 25 chr11 5415732 5415812 -116428044 + ID4 SINE ID 2 81 -2 1 626 897 215 67 0 chr11 5415848 5416043 -116427813 + B3 SINE B2 8 215 -1 1 626 246 309 70 96 chr11 5416130 5416247 -116427609 + ID_B1 SINE B4 2 109 -115 1 626 758 234 113 5 chr11 5416247 5416432 -116427424 + B3 SINE B2 2 206 -10 1 626 246 309 70 96 chr11 5416432 5416450 -116427406 + ID_B1 SINE B4 110 224 0 1 626 382 204 97 0 chr11 5416450 5416543 -116427313 + B1F2 SINE Alu 48 149 0 1 626 26 74 0 0 chr11 5416548 5416602 -116427254 + AT_rich Low_complexity Low_complexity 1 54 0 1 626 324 227 56 11 chr11 5417077 5417166 -116426690 - PB1 SINE Alu -1 126 34 1 626 382 209 0 0 chr11 5417273 5417340 -116426516 - B1_Mus1 SINE Alu -81 67 1 1 626 307 203 0 30 chr11 5417284 5417350 -116426506 - ID_B1 SINE B4 -88 136 73 1 626 266 256 93 0 chr11 5417350 5417436 -116426420 - L1MB3 LINE L1 -2 6181 6088 1 626 360 94 0 0 chr11 5417968 5418021 -116425835 + URR1B DNA MER1_type 173 225 0 1 626 411 225 0 0 chr11 5418406 5418486 -116425370 + Lx6 LINE L1 6672 6751 -709 1 626 1316 86 48 0 chr11 5418634 5418820 -116425036 + B2_Mm2 SINE B2 1 195 0 1 626 4258 191 75 12 chr11 5418878 5419757 -116424099 + Lx5 LINE L1 6117 7050 0 1 626 395 325 89 0 chr11 5419820 5419989 -116423867 + B4A SINE B4 68 251 -41 1 626 413 242 177 32 chr11 5420332 5420456 -116423400 - B1F1 SINE Alu -1 148 7 1 626 207 286 11 21 chr11 5420945 5421038 -116422818 + (CGG)n Simple_repeat Simple_repeat 3 94 0 1 626 22 0 0 0 chr11 5422280 5422302 -116421554 + GC_rich Low_complexity Low_complexity 1 22 0 1 626 260 304 72 52 chr11 5422465 5422659 -116421197 - L1_Rod LINE L1 -1 5846 5649 1 626 299 220 206 11 chr11 5422720 5422812 -116421044 - PB1D7 SINE Alu -5 115 6 1 626 577 273 130 6 chr11 5423017 5423194 -116420662 - ID_B1 SINE B4 -6 218 20 1 626 284 376 62 27 chr11 5423548 5423660 -116420196 - PB1D10 SINE Alu -1 116 1 1 626 323 226 0 0 chr11 5423693 5423746 -116420110 - PB1D10 SINE Alu -47 70 18 1 626 210 250 89 38 chr11 5423702 5423781 -116420075 - B4 SINE B4 -146 146 64 1 626 433 212 202 0 chr11 5423768 5423867 -116419989 - ID_B1 SINE B4 -4 220 102 1 626 425 278 67 17 chr11 5423936 5424154 -116419702 - B4A SINE B4 -14 278 1 1 626 244 312 61 89 chr11 5425363 5425609 -116418247 + YREP_Mm Unknown Unknown 52 290 -1522 1 626 466 209 37 19 chr11 5425527 5425634 -116418222 - ID_B1 SINE B4 -31 193 85 1 626 875 271 28 9 chr11 5427423 5427639 -116416217 - B4A SINE B4 -71 221 2 1 626 392 236 63 45 chr11 5427640 5427751 -116416105 - ID_B1 SINE B4 -9 215 103 1 626 234 208 48 232 chr11 5427751 5427765 -116416091 - PB1D7 SINE Alu -9 111 10 1 626 430 234 80 5 chr11 5428185 5428310 -116415546 - B1F1 SINE Alu -22 127 1 1 626 245 311 44 87 chr11 5428310 5428375 -116415481 - MT2B LTR ERVL -443 158 102 1 626 731 133 147 8 chr11 5431811 5431940 -116411916 + B1_Mur3 SINE Alu 2 148 -1 1 626 237 192 96 0 chr11 5431951 5432003 -116411853 + U6 snRNA snRNA 1 57 -50 1 626 299 53 0 0 chr11 5432144 5432182 -116411674 + ORR1B2 LTR MaLR 329 366 -1 1 626 230 250 67 0 chr11 5432233 5432293 -116411563 - tRNA-Ala-GCG tRNA tRNA -8 67 4 1 626 755 201 7 7 chr11 5432392 5432537 -116411319 + B1_Mur2 SINE Alu 1 145 -4 1 626 239 234 39 96 chr11 5432913 5433017 -116410839 - YREP_Mm Unknown Unknown -1486 326 229 1 626 408 206 41 61 chr11 5432949 5433047 -116410809 + PB1D10 SINE Alu 22 117 0 1 626 234 0 0 0 chr11 5433425 5433451 -116410405 + (CACAG)n Simple_repeat Simple_repeat 2 27 0 1 626 239 253 38 12 chr11 5433599 5433679 -116410177 - ID2 SINE ID 0 83 2 1 626 395 244 121 9 chr11 5433822 5433938 -116409918 - B1F2 SINE Alu -20 129 1 1 626 400 208 65 9 chr11 5435090 5435197 -116408659 - PB1D9 SINE Alu -7 113 1 1 626 632 209 127 12 chr11 5435224 5435389 -116408467 - B3 SINE B2 -6 210 27 1 626 682 57 0 0 chr11 5435389 5435477 -116408379 + B2_Mm2 SINE B2 1 88 -107 1 626 2428 125 58 43 chr11 5435478 5435946 -116407910 + IAPLTR2_Mm LTR ERVK 1 475 0 1 626 732 41 82 0 chr11 5435946 5436043 -116407813 + B2_Mm2 SINE B2 84 188 -7 1 626 26 30 0 0 chr11 5436075 5436108 -116407748 + AT_rich Low_complexity Low_complexity 1 33 0 1 626 534 201 277 7 chr11 5436323 5436478 -116407378 + B3 SINE B2 16 212 -4 1 626 187 305 0 87 chr11 5436713 5436817 -116407039 - MIR3 SINE MIR -10 198 104 1 626 288 308 43 21 chr11 5437306 5437399 -116406457 + ID_B1 SINE B4 123 217 -7 1 626 1614 21 32 0 chr11 5437430 5437617 -116406239 + B2_Mm1a SINE B2 1 193 0 1 626 1149 43 43 0 chr11 5437853 5437994 -116405862 + B1_Mm SINE Alu 1 147 0 1 626 727 266 43 11 chr11 5438009 5438195 -116405661 + B3A SINE B2 1 192 -6 1 626 771 154 390 122 chr11 5438297 5438659 -116405197 - RMER6B LTR ERVK -2 459 1 1 626 746 160 50 0 chr11 5438713 5438832 -116405024 - B1_Mus1 SINE Alu -5 143 19 1 626 463 250 60 0 chr11 5438864 5438964 -116404892 - PB1D9 SINE Alu -13 107 2 1 626 494 250 70 21 chr11 5439131 5439274 -116404582 + B4 SINE B4 2 151 -141 1 626 414 289 145 60 chr11 5439309 5439578 -116404278 + B4A SINE B4 1 292 0 1 626 345 265 204 10 chr11 5439617 5439720 -116404136 + B1_Mur2 SINE Alu 17 139 -10 1 626 194 0 39 0 chr11 5439720 5439746 -116404110 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 626 217 180 0 107 chr11 5439756 5439812 -116404044 + B1_Mur4 SINE Alu 35 84 -66 1 626 205 65 42 42 chr11 5439814 5439862 -116403994 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 626 373 258 41 0 chr11 5439981 5440078 -116403778 - PB1D9 SINE Alu -11 109 9 1 626 37 0 0 0 chr11 5440085 5440122 -116403734 + AT_rich Low_complexity Low_complexity 1 37 0 1 626 1279 27 0 7 chr11 5440160 5440308 -116403548 - B1_Mus2 SINE Alu 0 147 1 1 626 400 202 32 11 chr11 5440357 5440452 -116403404 - ID_B1 SINE B4 -7 217 121 1 626 556 282 40 0 chr11 5440682 5440806 -116403050 + RSINE1 SINE B4 9 137 -28 1 626 247 289 10 58 chr11 5440858 5440961 -116402895 + MT2B LTR ERVL 169 266 -335 1 626 466 240 91 23 chr11 5442392 5442524 -116401332 + ID_B1 SINE B4 82 222 -2 1 626 304 282 8 113 chr11 5442602 5442620 -116401236 + MT2B LTR ERVL 153 157 -444 1 626 602 243 57 0 chr11 5442620 5442760 -116401096 + B1_Mur1 SINE Alu 2 149 0 1 626 255 262 91 50 chr11 5443025 5443140 -116400716 + PB1D10 SINE Alu 1 130 -17 1 626 183 217 65 0 chr11 5443247 5443293 -116400563 - L2 LINE L2 -923 2496 2448 1 626 261 258 0 31 chr11 5443436 5443500 -116400356 - MER90a LTR ERV1 0 614 553 1 626 380 207 7 153 chr11 5443589 5443726 -116400130 + PB1D10 SINE Alu 1 117 0 1 626 232 293 40 0 chr11 5444011 5444086 -116399770 - MER90a LTR ERV1 -389 225 148 1 626 449 136 192 10 chr11 5444242 5444346 -116399510 - RMER19B LTR ERVK -475 427 305 1 626 3687 167 85 23 chr11 5444505 5444599 -116399257 - RMER19B LTR ERVK 0 902 810 1 626 7366 60 3 0 chr11 5444599 5445489 -116398367 - RLTR13B1 LTR ERVK 0 893 1 1 626 3687 167 85 23 chr11 5445489 5446146 -116397710 - RMER19B LTR ERVK -93 809 104 1 626 371 244 22 11 chr11 5446149 5446240 -116397616 - RLTR20B1 LTR ERVK -4 556 465 1 626 447 35 0 0 chr11 5446240 5446297 -116397559 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 626 1810 167 68 12 chr11 5446304 5446704 -116397152 - RLTR20B1 LTR ERVK -141 422 1 1 626 619 136 45 0 chr11 5446704 5446809 -116397047 - RMER19B LTR ERVK -792 110 1 1 626 1238 41 0 0 chr11 5447397 5447544 -116396312 - B1_Mm SINE Alu 0 147 1 1 626 1432 157 204 90 chr11 5447549 5447961 -116395895 - RMER6B LTR ERVK 0 461 3 1 626 232 343 0 21 chr11 5448018 5448161 -116395695 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 626 4675 67 7 0 chr11 5448646 5449228 -116394628 + LTRIS_Mus LTR ERV1 1 586 -1 1 626 1089 127 0 12 chr11 5449228 5449388 -116394468 + MuRRS-int LTR ERV1 1 158 -4532 1 626 6651 125 11 38 chr11 5449382 5450910 -116392946 + MuRRS-int LTR ERV1 3279 4690 0 1 626 4702 49 28 0 chr11 5450910 5451481 -116392375 + LTRIS_Mus LTR ERV1 1 587 0 1 626 3737 142 51 14 chr11 5451484 5452186 -116391670 - RMER6A LTR ERVK -28 728 1 1 626 245 151 19 0 chr11 5452314 5452367 -116391489 + CT-rich Low_complexity Low_complexity 2 55 0 1 626 468 252 12 158 chr11 5452368 5452418 -116391438 - B1_Mur2 SINE Alu -8 141 106 1 626 276 30 0 0 chr11 5452418 5452451 -116391405 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 626 1152 83 0 0 chr11 5452452 5452596 -116391260 - B1_Mus1 SINE Alu -3 145 2 1 626 477 252 12 158 chr11 5452596 5452708 -116391148 - B1_Mur1 SINE Alu -37 112 1 1 626 3154 107 40 70 chr11 5452744 5453346 -116390510 - RLTR6_Mm LTR ERV1 -70 584 1 1 626 15765 29 33 6 chr11 5453346 5456198 -116387658 - MMVL30-int LTR ERV1 0 3698 772 1 626 388 179 118 40 chr11 5456547 5456699 -116387157 - MMVL30-int LTR ERV1 -7023 533 280 1 626 6650 24 46 17 chr11 5456693 5457499 -116386357 - RLTR6-int LTR ERV1 -6949 829 1 1 626 3290 107 39 68 chr11 5457500 5458122 -116385734 - RLTR6_Mm LTR ERV1 -50 604 1 1 626 24 32 0 0 chr11 5458283 5458314 -116385542 + AT_rich Low_complexity Low_complexity 1 31 0 1 626 1319 72 22 0 chr11 5458323 5458503 -116385353 - ORR1A1 LTR MaLR -8 338 155 1 626 1883 245 68 71 chr11 5458511 5460059 -116383797 - RMER1A Other Other -357 709 1 1 626 1243 115 15 25 chr11 5460403 5460599 -116383257 - B2_Mm2 SINE B2 -1 194 1 1 626 855 168 0 0 chr11 5460764 5460907 -116382949 - B1_Mus2 SINE Alu -2 145 3 1 626 350 250 0 88 chr11 5460806 5460920 -116382936 - MT2B LTR ERVL -343 258 155 1 626 3202 19 65 0 chr11 5461215 5461587 -116382269 + MTA_Mm LTR MaLR 1 396 0 1 626 1964 163 39 3 chr11 5461588 5461944 -116381912 - RLTR14 LTR ERV1 -6 376 8 1 626 828 201 86 169 chr11 5462532 5462945 -116380911 + MTC LTR MaLR 5 403 -16 1 626 396 292 157 25 chr11 5462969 5463243 -116380613 - MTE2b LTR MaLR -24 355 46 1 626 322 296 61 56 chr11 5464900 5465097 -116378759 - B3A SINE B2 0 198 1 1 626 412 309 7 0 chr11 5465124 5465260 -116378596 - B1_Mur2 SINE Alu -12 137 1 1 626 701 181 87 0 chr11 5465275 5465413 -116378443 - B1_Mur4 SINE Alu 0 150 1 1 626 1143 263 85 20 chr11 5465420 5465773 -116378083 - Lx8 LINE L1 -329 7144 6769 1 626 635 289 26 20 chr11 5465852 5466138 -116377718 - L1MA4A LINE L1 -382 5921 5633 1 626 681 168 35 35 chr11 5466848 5466990 -116376866 + B1_Mur2 SINE Alu 2 143 -6 1 626 1824 155 80 30 chr11 5467796 5468161 -116375695 + ORR1C2 LTR MaLR 1 383 -1 1 626 180 111 0 0 chr11 5468921 5468948 -116374908 + (AGGGGG)n Simple_repeat Simple_repeat 1 27 0 1 626 25 0 0 0 chr11 5471694 5471719 -116372137 + AT_rich Low_complexity Low_complexity 1 25 0 1 626 564 200 25 25 chr11 5471779 5471897 -116371959 + PB1D7 SINE Alu 2 119 -1 1 626 271 23 22 44 chr11 5472378 5472423 -116371433 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 626 382 280 41 87 chr11 5472437 5472609 -116371247 + B3A SINE B2 31 194 -4 1 626 21 0 0 0 chr11 5472623 5472644 -116371212 + AT_rich Low_complexity Low_complexity 1 21 0 1 626 335 113 0 0 chr11 5472725 5472778 -116371078 + ORR1B2 LTR MaLR 1 53 -341 1 626 793 181 0 7 chr11 5472761 5472906 -116370950 + ORR1B2 LTR MaLR 216 359 -8 1 626 495 0 0 0 chr11 5473242 5473297 -116370559 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 626 1275 95 28 0 chr11 5473496 5473675 -116370181 - B2_Mm2 SINE B2 -10 185 2 1 626 22 35 0 0 chr11 5474667 5474696 -116369160 + AT_rich Low_complexity Low_complexity 1 29 0 1 626 238 294 0 0 chr11 5474717 5474785 -116369071 + T-rich Low_complexity Low_complexity 1 68 0 1 626 940 86 21 0 chr11 5474787 5474927 -116368929 - B1_Mus1 SINE Alu 0 148 6 1 626 400 220 8 99 chr11 5474820 5474941 -116368915 - MT2B LTR ERVL -337 264 155 1 626 227 309 31 21 chr11 5475128 5475224 -116368632 - MTE2b LTR MaLR -34 345 249 1 626 371 143 50 0 chr11 5475447 5475539 -116368317 + B1_Mur1 SINE Alu 52 149 0 1 626 234 0 0 0 chr11 5475543 5475569 -116368287 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 626 1327 90 11 0 chr11 5476104 5476282 -116367574 - B2_Mm2 SINE B2 -14 181 2 1 626 471 222 147 7 chr11 5476436 5476572 -116367284 - B3 SINE B2 -61 155 1 1 626 1645 152 36 13 chr11 5476680 5476981 -116366875 + RMER12 LTR ERVK 1 308 -1014 1 626 2735 176 149 33 chr11 5477104 5477829 -116366027 + RMER12 LTR ERVK 513 1321 -1 1 626 602 168 47 87 chr11 5478108 5478258 -116365598 + B1_Mur1 SINE Alu 5 148 -1 1 626 180 97 0 0 chr11 5478276 5478307 -116365549 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 626 385 289 30 66 chr11 5478334 5478501 -116365355 + B3A SINE B2 38 198 0 1 626 342 203 13 13 chr11 5478694 5478769 -116365087 + BC1_Mm scRNA scRNA 1 75 -77 1 626 1140 183 179 40 chr11 5479008 5479333 -116364523 + MTD LTR MaLR 42 411 -8 1 626 905 173 46 0 chr11 5479934 5480107 -116363749 + URR1A DNA MER1_type 41 221 -5 1 626 819 142 222 11 chr11 5484959 5485144 -116358712 - ORR1A3 LTR MaLR -102 224 1 1 626 2026 160 43 23 chr11 5485146 5485543 -116358313 + Lx9 LINE L1 3891 4295 -1585 1 626 2056 171 56 8 chr11 5485544 5485938 -116357918 - MTC LTR MaLR -8 413 1 1 626 5920 207 103 39 chr11 5485938 5488290 -116355566 + Lx9 LINE L1 4305 6992 -652 1 626 1619 32 16 0 chr11 5488290 5488479 -116355377 + B2_Mm1a SINE B2 2 193 0 1 626 5250 217 73 74 chr11 5488479 5489199 -116354657 + Lx9 LINE L1 6993 7644 0 1 626 509 176 28 91 chr11 5489216 5489375 -116354481 + ORR1D1 LTR MaLR 195 366 -8 1 626 516 226 26 0 chr11 5489784 5489899 -116353957 + PB1D9 SINE Alu 2 119 -1 1 626 1451 72 0 20 chr11 5490148 5490347 -116353509 - B2_Mm2 SINE B2 0 195 1 1 626 22 0 0 0 chr11 5490781 5490803 -116353053 + AT_rich Low_complexity Low_complexity 1 22 0 1 626 1031 82 7 39 chr11 5490956 5491109 -116352747 + B1_Mus1 SINE Alu 1 148 0 1 626 418 32 0 0 chr11 5491142 5491204 -116352652 + L1Md_F2 LINE L1 6521 6582 0 1 626 450 65 0 0 chr11 5491269 5491331 -116352525 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 626 929 229 94 132 chr11 5491474 5491867 -116351989 - MTE2a LTR MaLR 0 379 2 1 626 940 239 30 0 chr11 5491908 5492109 -116351747 - B3 SINE B2 -9 207 1 1 626 697 87 19 0 chr11 5493028 5493131 -116350725 + B1_Mur4 SINE Alu 35 139 -11 1 626 3108 26 0 0 chr11 5493501 5493847 -116350009 - ORR1A0 LTR MaLR 0 346 1 1 626 315 0 0 0 chr11 5494281 5494316 -116349540 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 1 626 1154 56 0 0 chr11 5494325 5494468 -116349388 - B1_Mus2 SINE Alu 0 147 5 1 626 226 159 97 54 chr11 5494780 5494873 -116348983 + Lx5 LINE L1 6954 7050 0 1 626 2476 231 108 18 chr11 5495217 5495950 -116347906 - RLTR40 LTR ERVK -16 801 3 1 626 29 28 0 0 chr11 5496135 5496171 -116347685 + AT_rich Low_complexity Low_complexity 1 36 0 1 626 180 0 0 0 chr11 5496390 5496410 -116347446 + (T)n Simple_repeat Simple_repeat 1 20 0 1 626 884 206 34 10 chr11 5497119 5497325 -116346531 + B3 SINE B2 1 211 -5 1 626 1423 239 10 10 chr11 5497455 5497767 -116346089 + Lx6 LINE L1 7140 7451 -9 1 626 486 0 0 0 chr11 5499022 5499076 -116344780 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 626 1125 37 0 42 chr11 5499347 5499489 -116344367 + B1_Mm SINE Alu 2 137 -10 1 626 428 242 137 0 chr11 5499630 5499754 -116344102 + B3 SINE B2 65 205 -11 1 626 408 40 0 0 chr11 5501415 5501465 -116342391 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 626 618 14 0 0 chr11 5501608 5501679 -116342177 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 626 21 0 0 0 chr11 5501792 5501813 -116342043 + AT_rich Low_complexity Low_complexity 1 21 0 3 626 662 223 167 11 chr11 5501880 5502143 -116341713 - ORR1E LTR MaLR -45 314 11 4 626 474 110 11 32 chr11 5502525 5502619 -116341237 + CT-rich Low_complexity Low_complexity 1 92 0 5 626 350 233 222 0 chr11 5502619 5502709 -116341147 - PB1D9 SINE Alu -9 111 2 6 626 295 184 132 44 chr11 5502819 5502910 -116340946 - B4A SINE B4 -192 100 2 7 626 516 297 87 30 chr11 5502964 5503228 -116340628 - B4A SINE B4 -13 279 1 8 626 724 231 121 103 chr11 5503972 5504472 -116339384 - MYSERV6-int LTR ERVK -1455 7504 7248 9 78 223 121 35 0 chr11 5504967 5505025 -116338831 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 627 247 197 55 27 chr11 5505642 5505715 -116338141 - RLTR28B LTR ERVL -14 510 436 1 627 635 233 169 4 chr11 5505772 5506026 -116337830 - RLTR28B LTR ERVL -154 327 32 1 627 3346 40 0 8 chr11 5506045 5506444 -116337412 + MTA_Mm LTR MaLR 1 396 0 1 627 831 238 6 0 chr11 5506444 5506625 -116337231 + B3 SINE B2 30 210 -6 1 627 23 33 0 0 chr11 5506670 5506700 -116337156 + AT_rich Low_complexity Low_complexity 1 30 0 1 627 314 231 176 0 chr11 5507682 5507773 -116336083 + PB1D10 SINE Alu 4 110 -7 1 627 251 161 0 18 chr11 5507852 5507909 -116335947 + GA-rich Low_complexity Low_complexity 4 59 0 1 627 950 148 34 6 chr11 5508653 5508830 -116335026 - MTC LTR MaLR 0 421 240 1 627 330 43 0 0 chr11 5508828 5508875 -116334981 - MTC LTR MaLR -135 286 240 1 627 1123 130 27 0 chr11 5508874 5509059 -116334797 - MTC LTR MaLR -136 285 96 1 627 777 170 0 81 chr11 5509615 5509649 -116334207 - B1_Mur3 SINE Alu -2 147 125 1 627 1416 135 18 9 chr11 5509649 5509873 -116333983 + URR1A DNA MER1_type 1 226 0 1 627 777 170 0 81 chr11 5509873 5509998 -116333858 - B1_Mur3 SINE Alu -25 124 1 1 627 26 0 0 0 chr11 5510003 5510029 -116333827 + AT_rich Low_complexity Low_complexity 1 26 0 2 627 1959 143 51 0 chr11 5510112 5510448 -116333408 - ORR1D1 LTR MaLR -19 355 3 2 627 22 0 0 0 chr11 5510512 5510534 -116333322 + AT_rich Low_complexity Low_complexity 1 22 0 2 627 1826 279 140 11 chr11 5510814 5511456 -116332400 + Lx8 LINE L1 6568 7292 -181 2 627 1337 285 63 124 chr11 5511520 5511834 -116332022 - L1M2 LINE L1 -748 5395 5114 2 627 4617 105 52 48 chr11 5511834 5512638 -116331218 + RMER17D2 LTR ERVK 1 807 -2 2 627 1337 285 63 124 chr11 5512638 5512966 -116330890 - L1M2 LINE L1 -1030 5113 4779 2 627 623 267 104 5 chr11 5512966 5513158 -116330698 - B3 SINE B2 -5 211 1 2 627 1337 285 63 124 chr11 5513158 5513739 -116330117 - L1M2 LINE L1 -1365 4778 4246 2 627 1291 34 0 0 chr11 5515661 5515808 -116328048 + B1_Mus1 SINE Alu 2 148 0 2 627 224 354 13 0 chr11 5515986 5516065 -116327791 - ID4_ SINE ID -3 80 1 2 627 1847 153 26 14 chr11 5516185 5516530 -116327326 - ORR1D1 LTR MaLR 0 374 26 2 627 900 86 0 0 chr11 5516530 5516670 -116327186 + (TG)n Simple_repeat Simple_repeat 2 141 0 3 627 2454 144 29 19 chr11 5517091 5517508 -116326348 - MTC LTR MaLR 0 421 1 3 627 837 282 19 0 chr11 5517660 5517866 -116325990 + B3 SINE B2 7 216 0 3 627 22 0 0 0 chr11 5517872 5517894 -116325962 + AT_rich Low_complexity Low_complexity 1 22 0 3 627 315 0 0 0 chr11 5518233 5518268 -116325588 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 627 1032 104 0 7 chr11 5518276 5518421 -116325435 - B1_Mur4 SINE Alu -6 144 1 3 627 1021 246 5 5 chr11 5520538 5520746 -116323110 + B3 SINE B2 3 210 -6 3 627 513 219 35 101 chr11 5520885 5521083 -116322773 - B3A SINE B2 -12 186 2 3 627 397 247 30 65 chr11 5522285 5522484 -116321372 + Lx7 LINE L1 873 1064 -6664 3 627 704 159 0 0 chr11 5522508 5522615 -116321241 + Lx7 LINE L1 1736 1842 -4038 3 627 5407 186 70 29 chr11 5522622 5523541 -116320315 + Lx7 LINE L1 2010 2982 -2898 3 627 243 88 0 0 chr11 5523541 5523575 -116320281 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 627 5407 186 70 29 chr11 5523575 5523974 -116319882 + Lx7 LINE L1 2983 3381 -2499 3 627 1735 183 25 23 chr11 5523982 5524335 -116319521 - ORR1D1 LTR MaLR 0 374 21 4 627 1096 207 140 14 chr11 5524335 5524756 -116319100 + Lx7 LINE L1 3392 3719 -2161 3 627 924 146 30 12 chr11 5524756 5524922 -116318934 + URR1B DNA MER1_type 57 225 0 4 627 3667 240 136 15 chr11 5524922 5526782 -116317074 + Lx7 LINE L1 5225 7417 -279 3 627 33 25 0 0 chr11 5526866 5526906 -116316950 + AT_rich Low_complexity Low_complexity 1 40 0 4 627 262 247 107 70 chr11 5528018 5528044 -116315812 - B2_Mm2 SINE B2 0 195 2 4 627 456 297 50 37 chr11 5528044 5528205 -116315651 - RSINE1 SINE B4 0 165 3 4 627 487 138 0 0 chr11 5529804 5529884 -116313972 - B3 SINE B2 -102 114 35 4 627 863 50 0 48 chr11 5530991 5531116 -116312740 + B1_Mus1 SINE Alu 22 140 -8 4 627 534 268 46 76 chr11 5531180 5531418 -116312438 - B4A SINE B4 -61 231 1 4 627 285 183 0 0 chr11 5531872 5531932 -116311924 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 627 21 0 0 0 chr11 5531964 5531985 -116311871 + AT_rich Low_complexity Low_complexity 1 21 0 4 627 231 280 9 74 chr11 5532664 5532693 -116311163 - MT2B LTR ERVL -334 267 167 5 627 281 228 127 0 chr11 5532693 5532772 -116311084 - PB1D9 SINE Alu -29 91 3 5 627 3729 151 86 3 chr11 5532822 5533448 -116310408 - RLTR33 LTR ERVK 0 678 1 5 627 366 347 134 5 chr11 5533550 5533744 -116310112 - Lx8 LINE L1 -468 7005 6787 5 627 21 71 0 0 chr11 5534015 5534057 -116309799 + AT_rich Low_complexity Low_complexity 1 42 0 5 627 227 196 0 0 chr11 5534729 5534775 -116309081 + A-rich Low_complexity Low_complexity 3 48 0 5 627 21 36 0 0 chr11 5534898 5534926 -116308930 + AT_rich Low_complexity Low_complexity 1 28 0 5 627 879 236 40 5 chr11 5535836 5536036 -116307820 + B3 SINE B2 3 209 -7 5 627 466 204 50 50 chr11 5536261 5536276 -116307580 + PB1D9 SINE Alu 2 14 -106 5 627 3397 38 2 2 chr11 5536276 5536672 -116307184 + MTA_Mm LTR MaLR 1 396 0 5 627 466 204 50 50 chr11 5536672 5536775 -116307081 + PB1D9 SINE Alu 15 120 0 5 627 271 230 62 103 chr11 5536858 5536955 -116306901 + MT2B LTR ERVL 147 239 -362 6 627 691 223 0 7 chr11 5536880 5537020 -116306836 + B1_Mur3 SINE Alu 10 148 -1 6 627 661 219 95 40 chr11 5538794 5538994 -116304862 - B3 SINE B2 -4 212 2 6 627 1189 54 7 0 chr11 5539261 5539408 -116304448 - B1_Mus1 SINE Alu 0 148 1 6 627 930 182 96 0 chr11 5540002 5540189 -116303667 + B3 SINE B2 2 206 -10 6 627 898 284 139 11 chr11 5540244 5540696 -116303160 - L1M2 LINE L1 -1756 4387 3878 6 627 2484 122 10 8 chr11 5540747 5541136 -116302720 + ORR1B1 LTR MaLR 5 394 0 6 627 459 256 13 20 chr11 5541136 5541337 -116302519 - L1M2 LINE L1 -2308 3832 3643 6 627 274 296 163 7 chr11 5541841 5542147 -116301709 - L1M2 LINE L1 -2706 3437 3084 6 627 333 0 0 0 chr11 5542160 5542197 -116301659 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 627 347 338 31 25 chr11 5542823 5542984 -116300872 + RSINE1 SINE B4 4 165 0 6 627 191 61 30 0 chr11 5543031 5543064 -116300792 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 6 627 841 74 0 39 chr11 5543065 5543192 -116300664 - B1_Mus1 SINE Alu 0 148 27 7 627 798 216 103 0 chr11 5543209 5543394 -116300462 - B3 SINE B2 -5 211 8 7 627 549 0 0 0 chr11 5544394 5544455 -116299401 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 627 393 261 28 128 chr11 5544462 5544642 -116299214 - MTE2a LTR MaLR -217 162 1 7 627 992 135 0 0 chr11 5546050 5546198 -116297658 + B1_Mur3 SINE Alu 1 148 -1 7 627 258 263 37 75 chr11 5546242 5546349 -116297507 + RSINE1 SINE B4 2 104 -61 7 627 24 0 0 0 chr11 5546388 5546412 -116297444 + AT_rich Low_complexity Low_complexity 1 24 0 7 627 524 170 248 9 chr11 5546592 5546705 -116297151 + B1_Mur1 SINE Alu 2 141 -8 7 627 225 348 35 56 chr11 5547597 5547740 -116296116 - L1M5 LINE L1 -571 5591 5452 7 627 2853 279 83 18 chr11 5547922 5548905 -116294951 - Lx8 LINE L1 -186 7287 6241 7 627 333 0 0 0 chr11 5548927 5548964 -116294892 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 627 296 266 14 82 chr11 5549035 5549136 -116294720 - PB1 SINE Alu -31 118 7 8 627 483 270 106 55 chr11 5549726 5549981 -116293875 - MTD LTR MaLR -151 268 1 8 627 278 295 63 0 chr11 5550335 5550430 -116293426 - Lx8 LINE L1 -322 7151 7051 8 627 484 189 8 132 chr11 5550440 5550570 -116293286 - B3 SINE B2 -8 187 74 8 627 214 139 63 35 chr11 5551012 5551154 -116292702 + (TA)n Simple_repeat Simple_repeat 2 147 0 8 627 3425 33 2 2 chr11 5551155 5551551 -116292305 + MTA_Mm LTR MaLR 1 396 0 8 627 7388 76 36 70 chr11 5551551 5552688 -116291168 + MTA_Mm-int LTR MaLR 1 1098 0 8 627 3210 51 2 20 chr11 5552688 5553091 -116290765 + MTA_Mm LTR MaLR 1 396 0 8 627 19844 123 16 52 chr11 5553109 5556151 -116287705 + L1_Mus2 LINE L1 242 3163 -2720 8 627 1375 66 44 0 chr11 5556151 5556310 -116287546 + B2_Mm1a SINE B2 2 160 -33 8 627 207 0 0 0 chr11 5556310 5556333 -116287523 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 8 627 1375 66 44 0 chr11 5556333 5556356 -116287500 + B2_Mm1a SINE B2 161 191 -2 8 627 24828 91 9 17 chr11 5556356 5557817 -116286039 + L1_Mus2 LINE L1 3164 4638 -1245 8 627 225 0 0 0 chr11 5557817 5557842 -116286014 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 627 24828 70 5 12 chr11 5557842 5559777 -116284079 + L1_Mus2 LINE L1 4639 6566 0 8 627 23 33 0 0 chr11 5559781 5559811 -116284045 + AT_rich Low_complexity Low_complexity 1 30 0 9 627 1322 179 255 152 chr11 5559998 5560480 -116283376 - MT2A LTR ERVL 0 533 2 9 627 829 245 35 0 chr11 5560868 5561068 -116282788 - B3 SINE B2 -5 211 5 9 627 1246 97 54 5 chr11 5561411 5561597 -116282259 - B2_Mm2 SINE B2 0 195 1 9 627 2037 263 126 78 chr11 5564001 5564928 -116278928 - Lx8 LINE L1 -1 7472 6501 9 627 394 200 47 12 chr11 5564934 5565020 -116278836 - B3 SINE B2 -127 89 1 9 627 4173 284 166 100 chr11 5565029 5566698 -116277158 - L1M2 LINE L1 -433 6149 4114 9 627 1646 27 0 0 chr11 5566698 5566884 -116276972 - B2_Mm1a SINE B2 -6 187 2 9 627 4173 284 166 100 chr11 5566884 5567488 -116276368 - L1M2 LINE L1 -2469 4113 3517 9 627 644 113 57 0 chr11 5567488 5567594 -116276262 - B1_Mus2 SINE Alu 0 147 36 9 627 4173 284 166 100 chr11 5567594 5568329 -116275527 - L1M2 LINE L1 -2469 3516 2789 9 627 462 36 0 0 chr11 5568329 5568385 -116275471 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 627 4173 295 146 89 chr11 5568385 5569479 -116274377 - L1M2 LINE L1 -3794 2788 1633 9 627 1920 173 16 54 chr11 5569504 5569931 -116273925 - RLTR19A LTR ERVK -64 432 22 1 627 190 321 61 44 chr11 5570276 5570390 -116273466 - MIR SINE MIR -96 166 51 1 627 1717 21 0 0 chr11 5570418 5570610 -116273246 - B2_Mm1t SINE B2 0 193 2 1 627 204 255 29 10 chr11 5570620 5570723 -116273133 + T-rich Low_complexity Low_complexity 1 105 0 1 627 1176 68 0 0 chr11 5570745 5570893 -116272963 + B1_Mus1 SINE Alu 1 148 0 1 627 221 83 0 27 chr11 5570894 5570931 -116272925 + (GAA)n Simple_repeat Simple_repeat 2 37 0 1 627 1219 68 0 0 chr11 5571055 5571203 -116272653 + B1_Mus1 SINE Alu 1 148 0 1 627 189 0 0 0 chr11 5571203 5571224 -116272632 + (A)n Simple_repeat Simple_repeat 1 21 0 1 627 1703 99 82 0 chr11 5571302 5571584 -116272272 - ORR1A4 LTR MaLR 0 329 25 1 627 22 0 0 0 chr11 5572400 5572422 -116271434 + AT_rich Low_complexity Low_complexity 1 22 0 1 627 422 261 23 0 chr11 5572710 5572798 -116271058 + PB1D9 SINE Alu 3 92 -28 1 627 375 41 0 0 chr11 5572822 5572871 -116270985 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 627 1124 65 0 0 chr11 5572945 5573083 -116270773 + B1_Mus2 SINE Alu 1 138 -9 1 627 270 0 0 0 chr11 5573083 5573113 -116270743 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 627 542 242 181 6 chr11 5573200 5573366 -116270490 + B3A SINE B2 4 198 0 1 627 972 121 0 14 chr11 5573389 5573531 -116270325 + B1_Mus2 SINE Alu 3 142 -5 1 627 873 202 134 16 chr11 5573852 5574038 -116269818 + B3 SINE B2 1 208 -8 1 627 599 175 42 35 chr11 5574895 5575037 -116268819 + B3 SINE B2 74 216 0 1 627 796 191 138 41 chr11 5575372 5575568 -116268288 + B3 SINE B2 1 215 -1 1 627 327 263 196 5 chr11 5575928 5576142 -116267714 - Lx9 LINE L1 -1 7643 7389 1 627 685 199 123 46 chr11 5576155 5576350 -116267506 - B3 SINE B2 -4 212 3 1 627 3404 38 2 0 chr11 5576839 5577234 -116266622 + MTA_Mm LTR MaLR 1 396 0 1 627 1592 27 27 0 chr11 5578027 5578215 -116265641 + B2_Mm1t SINE B2 1 193 0 1 627 246 182 55 0 chr11 5578742 5578797 -116265059 + L1M3 LINE L1 2786 2843 -3297 1 627 21 0 0 0 chr11 5579078 5579099 -116264757 + AT_rich Low_complexity Low_complexity 1 21 0 1 627 4192 203 122 24 chr11 5579135 5580193 -116263663 + Lx9 LINE L1 6321 7482 -162 1 627 3417 30 5 0 chr11 5580193 5580587 -116263269 - MTA_Mm LTR MaLR 0 396 1 1 627 405 0 0 0 chr11 5580587 5580632 -116263224 + (TATG)n Simple_repeat Simple_repeat 1 45 0 1 627 737 141 8 30 chr11 5580632 5580764 -116263092 + B1_Mur4 SINE Alu 10 138 -12 1 627 189 0 0 0 chr11 5580764 5580785 -116263071 + (CAA)n Simple_repeat Simple_repeat 3 23 0 1 627 350 229 57 0 chr11 5580793 5580915 -116262941 + Lx9 LINE L1 7516 7644 0 1 627 1062 199 15 0 chr11 5580934 5581130 -116262726 + B3 SINE B2 3 201 -15 1 627 348 111 0 0 chr11 5581480 5581534 -116262322 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 627 1264 27 7 0 chr11 5581612 5581758 -116262098 + B1_Mm SINE Alu 1 147 0 1 627 440 139 13 0 chr11 5581846 5581925 -116261931 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 627 890 236 10 10 chr11 5581933 5582130 -116261726 - B3 SINE B2 -16 200 4 1 627 290 335 41 60 chr11 5582439 5582891 -116260965 - L1MB7 LINE L1 -246 5938 5491 1 627 549 205 0 9 chr11 5582913 5583026 -116260830 - PB1D9 SINE Alu -8 112 1 1 627 237 279 55 93 chr11 5583298 5583417 -116260439 - L1MB7 LINE L1 -1028 5118 5000 1 627 1675 26 0 20 chr11 5583417 5583613 -116260243 + B2_Mm1t SINE B2 1 192 -1 1 627 237 279 55 93 chr11 5583613 5583730 -116260126 - L1MB7 LINE L1 -1147 4999 4891 1 627 1105 99 0 0 chr11 5583746 5583887 -116259969 + B1_Mus2 SINE Alu 3 143 -4 1 627 441 36 0 0 chr11 5583887 5583942 -116259914 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 627 216 0 0 0 chr11 5583942 5583966 -116259890 + (T)n Simple_repeat Simple_repeat 1 24 0 1 627 450 0 0 0 chr11 5584323 5584373 -116259483 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 627 813 201 0 20 chr11 5585289 5585436 -116258420 + B1_Mur2 SINE Alu 1 144 -5 1 627 286 281 51 26 chr11 5585516 5585633 -116258223 - RMER15 LTR ERVL -181 394 275 1 627 574 184 25 34 chr11 5586068 5586186 -116257670 + B1_Mur1 SINE Alu 20 136 -13 1 627 207 0 0 0 chr11 5586186 5586209 -116257647 + (T)n Simple_repeat Simple_repeat 1 23 0 1 627 3318 52 0 0 chr11 5586236 5586639 -116257217 - L1Md_A LINE L1 0 6582 6180 1 627 1194 55 0 7 chr11 5586639 5586785 -116257071 + B1_Mm SINE Alu 1 145 -2 1 627 1313 176 210 6 chr11 5587765 5588108 -116255748 + MTC LTR MaLR 1 413 -8 1 627 537 211 275 55 chr11 5588112 5588403 -116255453 - MTD LTR MaLR -57 362 8 1 627 1439 71 25 5 chr11 5588670 5588868 -116254988 - L1_Mus1 LINE L1 0 6567 6366 1 627 308 228 0 0 chr11 5588899 5588956 -116254900 - B1_Mur2 SINE Alu -52 97 41 1 627 941 249 130 49 chr11 5590066 5590451 -116253405 - RMER2 LTR ERV1 -151 416 1 1 627 1983 235 181 22 chr11 5590490 5591125 -116252731 - RMER19A LTR ERVK -1 736 1 1 627 234 0 0 0 chr11 5591376 5591402 -116252454 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 627 552 224 172 38 chr11 5591653 5591839 -116252017 - B3 SINE B2 -5 211 1 1 627 2933 156 77 23 chr11 5591984 5592593 -116251263 - RLTR26 LTR ERVK 0 642 1 1 627 221 222 165 11 chr11 5592822 5592913 -116250943 + B3A SINE B2 94 198 0 1 627 520 261 48 106 chr11 5593269 5593496 -116250360 + Lx8 LINE L1 6768 6981 -492 1 627 260 372 54 8 chr11 5593590 5593720 -116250136 + Lx8 LINE L1 7142 7277 -196 1 627 762 256 0 6 chr11 5593730 5593895 -116249961 + B3 SINE B2 5 168 -48 1 627 387 186 128 0 chr11 5593888 5593974 -116249882 + BGLII_B LTR ERVK 335 431 -10 1 627 247 122 0 20 chr11 5593980 5594030 -116249826 + B3 SINE B2 164 212 -4 1 627 892 65 69 46 chr11 5594044 5594174 -116249682 + B1_Mus1 SINE Alu 1 133 -15 1 627 1405 67 96 0 chr11 5594174 5594383 -116249473 + ORR1A1 LTR MaLR 2 230 -116 1 627 2657 112 5 41 chr11 5594383 5594801 -116249055 - RLTR9D LTR ERVK 0 403 1 1 627 441 111 27 14 chr11 5594802 5594875 -116248981 - ETnERV2-int LTR ERVK -2 7404 7331 1 627 8369 198 88 90 chr11 5595089 5596411 -116247445 - ETnERV2-int LTR ERVK -1801 5443 4742 1 627 1129 71 0 7 chr11 5596411 5596553 -116247303 - B1_Mus2 SINE Alu -6 141 1 1 627 14251 133 62 49 chr11 5596553 5596717 -116247139 - ETnERV2-int LTR ERVK -3714 3692 3564 1 627 1659 21 21 0 chr11 5596717 5596905 -116246951 - B2_Mm1a SINE B2 0 193 2 1 627 14251 129 59 46 chr11 5596905 5599007 -116244849 - ETnERV2-int LTR ERVK -3843 3563 1437 1 627 954 39 158 0 chr11 5599007 5599134 -116244722 - B1_Mus2 SINE Alu 0 147 1 1 627 14251 129 59 46 chr11 5599134 5599465 -116244391 - ETnERV2-int LTR ERVK -5970 1436 1071 1 627 861 173 136 98 chr11 5599497 5599792 -116244064 - ETnERV2-int LTR ERVK -2982 332 27 1 627 1877 92 7 48 chr11 5599855 5600164 -116243692 - RLTR9D LTR ERVK -107 296 1 1 627 871 43 17 0 chr11 5600167 5600284 -116243572 + ORR1A1 LTR MaLR 228 346 0 1 627 207 0 0 0 chr11 5600297 5600320 -116243536 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 627 1137 225 117 129 chr11 5600695 5601216 -116242640 - MT2A LTR ERVL -2 531 17 1 627 380 127 0 40 chr11 5601326 5601428 -116242428 + L1_Mus2 LINE L1 6490 6566 0 1 627 1712 143 52 24 chr11 5601650 5601979 -116241877 - ORR1B1 LTR MaLR -8 386 49 1 627 353 196 86 11 chr11 5601983 5602076 -116241780 + MT2A LTR ERVL 222 321 -212 1 627 4288 121 198 64 chr11 5602250 5603152 -116240704 + RLTR13D2 LTR ERVK 1 1023 0 1 627 804 228 38 5 chr11 5603238 5603423 -116240433 - B3 SINE B2 -24 192 2 1 627 222 256 167 24 chr11 5603447 5603531 -116240325 - B1F SINE Alu 0 149 54 1 627 1429 65 49 0 chr11 5603589 5603773 -116240083 - B2_Mm2 SINE B2 -2 193 1 1 627 1174 88 0 0 chr11 5603788 5603935 -116239921 - B1_Mus1 SINE Alu -1 147 1 1 627 225 218 88 44 chr11 5604018 5604063 -116239793 + B3A SINE B2 99 148 -50 1 627 303 28 0 0 chr11 5604063 5604099 -116239757 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 627 225 218 88 44 chr11 5604099 5604144 -116239712 + B3A SINE B2 149 193 -5 1 627 960 86 64 0 chr11 5604166 5604306 -116239550 + B1_Mur4 SINE Alu 2 150 0 1 627 235 244 22 65 chr11 5605148 5605240 -116238616 + RSINE1 SINE B4 78 165 0 1 627 228 301 0 27 chr11 5605182 5605257 -116238599 + B3A SINE B2 126 198 0 1 627 409 284 105 45 chr11 5605272 5605406 -116238450 + MER82 DNA MER2_type 119 246 -407 1 627 1401 70 21 5 chr11 5605406 5605594 -116238262 + B2_Mm2 SINE B2 2 192 -3 1 627 409 284 105 45 chr11 5605594 5605772 -116238084 + MER82 DNA MER2_type 247 450 -203 1 627 224 317 106 93 chr11 5605886 5606112 -116237744 + B4 SINE B4 1 229 -63 1 627 247 298 32 0 chr11 5606249 5606343 -116237513 + PB1D10 SINE Alu 14 110 -7 1 627 312 296 77 66 chr11 5606564 5606745 -116237111 + LTR37A LTR ERV1 13 195 -231 1 627 247 183 317 0 chr11 5607126 5607208 -116236648 - PB1D9 SINE Alu -11 109 2 1 627 1722 21 0 0 chr11 5607895 5608088 -116235768 + B2_Mm1a SINE B2 1 193 0 1 627 757 171 13 27 chr11 5608118 5608268 -116235588 + B1_Mur3 SINE Alu 1 148 -1 1 627 207 109 41 61 chr11 5608755 5608804 -116235052 + T-rich Low_complexity Low_complexity 3 50 0 1 627 668 188 80 0 chr11 5608806 5608944 -116234912 - B1_Mur3 SINE Alu 0 149 1 1 627 462 227 91 30 chr11 5608967 5609099 -116234757 + B1_Mur1 SINE Alu 5 144 -5 1 627 239 289 79 0 chr11 5609262 5609338 -116234518 - ID_B1 SINE B4 -7 217 136 1 627 362 253 20 40 chr11 5609511 5609610 -116234246 + RSINE1 SINE B4 1 97 -68 1 627 354 23 0 0 chr11 5609681 5609724 -116234132 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 627 716 169 48 21 chr11 5609774 5609919 -116233937 + B1F SINE Alu 1 149 0 2 627 304 244 89 9 chr11 5610405 5610539 -116233317 + MIR SINE MIR 18 157 -111 2 627 380 261 40 48 chr11 5610921 5611046 -116232810 - B4A SINE B4 -41 251 128 2 627 378 202 103 31 chr11 5611055 5611152 -116232704 - PB1D9 SINE Alu 0 120 17 2 627 228 269 65 152 chr11 5611082 5611266 -116232590 - B4A SINE B4 -123 169 2 2 627 235 212 58 81 chr11 5611325 5611412 -116232444 - B3A SINE B2 -113 85 1 2 627 317 271 248 12 chr11 5611921 5612082 -116231774 - B3 SINE B2 -15 201 3 2 627 298 175 52 77 chr11 5613150 5613240 -116230616 - B1_Mur1 SINE Alu 0 117 35 2 627 434 240 42 0 chr11 5613254 5613350 -116230506 - PB1D10 SINE Alu -13 104 5 2 627 279 287 77 29 chr11 5613492 5613596 -116230260 - PB1D10 SINE Alu -6 111 3 2 627 595 174 124 36 chr11 5614055 5614192 -116229664 - B1_Mur2 SINE Alu 0 149 1 2 627 629 222 117 31 chr11 5614980 5615203 -116228653 - L2c LINE L2 0 3387 3146 2 627 212 31 62 0 chr11 5618274 5618306 -116225550 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 627 1142 61 0 26 chr11 5618505 5618656 -116225200 + B1_Mus2 SINE Alu 1 147 0 2 627 370 286 67 8 chr11 5618683 5618817 -116225039 + B3A SINE B2 57 198 0 2 627 424 283 24 24 chr11 5618815 5618938 -116224918 + B1_Mur1 SINE Alu 27 149 0 2 627 260 284 105 0 chr11 5619163 5619258 -116224598 + PB1D10 SINE Alu 5 109 -8 2 627 226 288 82 0 chr11 5619449 5619522 -116224334 - ID4 SINE ID -2 81 3 2 627 26 62 0 15 chr11 5619522 5619561 -116224295 + AT_rich Low_complexity Low_complexity 1 39 0 2 627 1367 90 16 5 chr11 5619561 5619750 -116224106 - B2_Mm2 SINE B2 -3 192 2 2 627 26 62 0 15 chr11 5619750 5619775 -116224081 + AT_rich Low_complexity Low_complexity 1 25 0 2 627 1176 55 0 14 chr11 5619775 5619923 -116223933 - B1_Mm SINE Alu 0 147 2 2 627 1667 21 11 0 chr11 5619931 5620121 -116223735 - B2_Mm1a SINE B2 0 193 2 2 627 1310 85 11 16 chr11 5620122 5620313 -116223543 - B2_Mm1t SINE B2 0 193 4 2 627 345 214 39 8 chr11 5620316 5620440 -116223416 - B1_Mur4 SINE Alu 0 150 48 2 627 1302 73 56 6 chr11 5620476 5620654 -116223202 - B2_Mm2 SINE B2 -6 189 3 2 627 759 221 160 84 chr11 5620769 5621234 -116222622 + MT2B LTR ERVL 1 493 0 2 627 180 0 0 0 chr11 5621487 5621507 -116222349 + (T)n Simple_repeat Simple_repeat 1 20 0 2 627 265 278 14 0 chr11 5621721 5621793 -116222063 - RSINE1 SINE B4 -88 77 5 2 627 292 319 0 0 chr11 5621878 5621947 -116221909 + RSINE1 SINE B4 3 71 -94 2 627 522 278 95 17 chr11 5622014 5622040 -116221816 - B3A SINE B2 -5 193 166 2 627 471 35 0 0 chr11 5622040 5622097 -116221759 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 627 522 278 95 17 chr11 5622097 5622249 -116221607 - B3A SINE B2 -33 165 1 2 627 573 156 147 0 chr11 5623402 5623511 -116220345 - B1_Mur1 SINE Alu 0 149 25 2 627 1122 75 0 7 chr11 5623537 5623685 -116220171 + B1_Mus1 SINE Alu 2 148 0 2 627 23 0 0 0 chr11 5623685 5623708 -116220148 + AT_rich Low_complexity Low_complexity 1 23 0 2 627 231 61 0 0 chr11 5623708 5623741 -116220115 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 627 1148 86 0 0 chr11 5623901 5624053 -116219803 + B2_Mm2 SINE B2 2 153 -42 2 627 477 0 0 0 chr11 5624053 5624106 -116219750 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 627 755 216 77 48 chr11 5624106 5624125 -116219731 + B3 SINE B2 170 182 -34 2 627 1137 56 14 0 chr11 5624125 5624268 -116219588 + B1_Mur4 SINE Alu 1 145 -5 2 627 755 216 77 48 chr11 5624268 5624304 -116219552 + B3 SINE B2 183 215 -1 2 627 475 261 137 38 chr11 5624485 5624668 -116219188 + B3 SINE B2 1 201 -15 2 627 478 268 71 0 chr11 5624680 5624807 -116219049 - B1_Mur2 SINE Alu -2 147 12 2 627 230 275 131 16 chr11 5624843 5624965 -116218891 + B1F1 SINE Alu 14 149 0 2 627 1217 41 7 0 chr11 5625226 5625372 -116218484 + B1_Mus1 SINE Alu 2 148 0 2 627 216 0 0 0 chr11 5625372 5625396 -116218460 + (A)n Simple_repeat Simple_repeat 1 24 0 2 627 616 222 151 9 chr11 5625419 5625637 -116218219 + L1M4 LINE L1 4952 5200 -946 2 627 438 233 34 25 chr11 5625638 5625757 -116218099 + PB1D9 SINE Alu 1 120 0 2 627 237 33 0 0 chr11 5625856 5625886 -116217970 + (CCA)n Simple_repeat Simple_repeat 3 32 0 2 627 781 117 0 43 chr11 5625883 5626071 -116217785 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 627 365 205 0 25 chr11 5626540 5626620 -116217236 + B2_Mm2 SINE B2 3 80 -115 2 627 336 191 174 0 chr11 5626811 5626926 -116216930 + L1M4 LINE L1 5596 5730 -394 2 627 1184 48 7 0 chr11 5627135 5627281 -116216575 + B1_Mm SINE Alu 1 147 0 2 627 338 210 35 174 chr11 5627294 5627438 -116216418 + MT2B LTR ERVL 155 278 -323 2 627 1003 72 0 67 chr11 5627316 5627465 -116216391 + B1_Mus1 SINE Alu 10 148 0 2 627 1300 102 21 5 chr11 5627573 5627761 -116216095 + B2_Mm2 SINE B2 2 192 -3 2 627 321 265 58 19 chr11 5627782 5627886 -116215970 + PB1D10 SINE Alu 7 114 -3 2 627 254 288 61 0 chr11 5627932 5627998 -116215858 - ID4 SINE ID -6 77 8 2 627 444 19 0 0 chr11 5628417 5628470 -116215386 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 627 1154 43 0 0 chr11 5628506 5628645 -116215211 + B1_Mus2 SINE Alu 1 139 -8 2 627 387 303 110 18 chr11 5628838 5629120 -116214736 + L1MC4 LINE L1 6715 7022 -1020 2 627 644 199 142 18 chr11 5629125 5629294 -116214562 + B3 SINE B2 4 193 -23 2 627 999 140 0 0 chr11 5629542 5629685 -116214171 + B1_Mus2 SINE Alu 2 144 -3 2 627 262 185 15 15 chr11 5630043 5630109 -116213747 + L1MC4 LINE L1 7789 7854 -188 2 627 422 252 185 0 chr11 5630402 5630537 -116213319 + RSINE1 SINE B4 4 163 -2 2 627 418 292 238 28 chr11 5631056 5631338 -116212518 + MLT1A LTR MaLR 19 359 -15 2 627 359 302 114 90 chr11 5631817 5631879 -116211977 + MLT1C LTR MaLR 68 123 -344 2 627 496 245 13 26 chr11 5631879 5632030 -116211826 + B1F SINE Alu 1 149 0 2 627 359 305 116 96 chr11 5632030 5632227 -116211629 + MLT1C LTR MaLR 124 329 -61 2 627 314 181 0 111 chr11 5632246 5632327 -116211529 + RMER15 LTR ERVL 1 72 -503 2 627 2192 194 93 25 chr11 5632355 5632869 -116210987 + RMER15 LTR ERVL 27 575 0 2 627 320 331 86 51 chr11 5632960 5633135 -116210721 - MLT1B LTR MaLR -209 181 1 2 627 506 285 45 133 chr11 5633302 5633540 -116210316 + B4A SINE B4 11 229 -63 2 627 561 236 59 84 chr11 5633540 5633743 -116210113 + B3A SINE B2 1 198 0 2 627 506 285 45 133 chr11 5633743 5633812 -116210044 + B4A SINE B4 230 291 -1 2 627 579 272 12 58 chr11 5633859 5634031 -116209825 + RSINE1 SINE B4 2 165 0 2 627 261 0 0 0 chr11 5635881 5635910 -116207946 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 627 1116 77 0 27 chr11 5635913 5636059 -116207797 - B1_Mus1 SINE Alu -6 142 1 2 628 1086 83 58 23 chr11 5636120 5636293 -116207563 + B2_Mm2 SINE B2 14 192 -3 2 628 379 191 269 34 chr11 5636546 5636665 -116207191 + B1_Mus2 SINE Alu 1 147 0 2 628 407 262 18 18 chr11 5636829 5636938 -116206918 + PB1D10 SINE Alu 4 112 -5 2 628 1115 288 112 29 chr11 5637161 5637572 -116206284 + MER44B DNA MER2_type 18 462 -88 2 628 996 198 39 5 chr11 5637584 5637787 -116206069 + B3 SINE B2 1 210 -6 2 628 1229 48 0 0 chr11 5637805 5637952 -116205904 + B1_Mus2 SINE Alu 1 147 0 2 628 324 0 0 0 chr11 5637952 5637988 -116205868 + (A)n Simple_repeat Simple_repeat 1 36 0 2 628 411 244 98 45 chr11 5638008 5638028 -116205828 + B1F SINE Alu 1 140 -9 2 628 542 181 18 71 chr11 5638028 5638141 -116205715 + ID_B1 SINE B4 109 215 -9 2 628 362 322 25 25 chr11 5638264 5638385 -116205471 + RSINE1 SINE B4 28 148 -17 2 628 416 264 0 0 chr11 5638456 5638543 -116205313 + PB1D10 SINE Alu 21 107 -10 2 628 436 239 92 0 chr11 5638876 5638985 -116204871 - ID_B1 SINE B4 -2 222 104 2 628 315 0 0 0 chr11 5639371 5639406 -116204450 + (A)n Simple_repeat Simple_repeat 1 35 0 2 628 681 184 40 54 chr11 5642048 5642197 -116201659 - B1_Mur3 SINE Alu -1 148 2 2 628 1347 95 11 0 chr11 5642249 5642438 -116201418 + B2_Mm2 SINE B2 2 192 -3 2 628 206 204 0 22 chr11 5642498 5642543 -116201313 + MIR SINE MIR 39 82 -180 2 628 276 169 54 40 chr11 5642894 5642907 -116200949 + B4 SINE B4 70 144 -148 2 628 352 85 16 33 chr11 5642907 5642968 -116200888 + B1_Mur4 SINE Alu 1 60 -90 2 628 271 167 97 97 chr11 5642988 5643101 -116200755 + RLTR25B LTR ERVK 397 509 -519 2 628 785 52 0 0 chr11 5643038 5643135 -116200721 + B1_Mus2 SINE Alu 42 138 -9 2 628 237 33 0 0 chr11 5643147 5643177 -116200679 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 628 1828 209 51 38 chr11 5643267 5643758 -116200098 + RLTR20B3 LTR ERVK 75 568 0 2 628 383 138 0 0 chr11 5643829 5643887 -116199969 + B1_Mur4 SINE Alu 87 144 -6 2 628 519 272 54 152 chr11 5644041 5644245 -116199611 - B3A SINE B2 0 198 7 2 628 988 229 14 28 chr11 5644273 5644489 -116199367 - B3 SINE B2 -3 213 1 2 628 1547 48 21 0 chr11 5644845 5645034 -116198822 + B2_Mm1a SINE B2 1 193 0 2 628 352 274 88 22 chr11 5645079 5645307 -116198549 - L1MB4 LINE L1 -74 6106 5864 2 628 391 265 73 7 chr11 5645602 5645739 -116198117 - B3 SINE B2 -5 211 66 3 628 2317 175 55 95 chr11 5645788 5646101 -116197755 - ORR1D1-int LTR MaLR -772 598 282 3 628 3243 46 18 0 chr11 5646101 5646494 -116197362 + MTB LTR MaLR 1 400 0 3 628 2317 193 54 100 chr11 5646494 5646818 -116197038 - ORR1D1-int LTR MaLR -1089 281 1 3 628 1473 162 168 6 chr11 5646818 5647140 -116196716 - ORR1D1 LTR MaLR 0 374 1 3 628 213 125 24 24 chr11 5647140 5647181 -116196675 - B3 SINE B2 -174 42 2 3 628 368 236 22 11 chr11 5647181 5647267 -116196589 - MLT1B LTR MaLR -212 178 92 3 628 183 167 0 0 chr11 5647335 5647377 -116196479 + T-rich Low_complexity Low_complexity 1 42 0 3 628 670 165 6 147 chr11 5647391 5647547 -116196309 + B1_Mm SINE Alu 2 135 -12 3 628 1026 129 0 0 chr11 5647548 5647711 -116196145 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 3 628 636 14 0 0 chr11 5647711 5647783 -116196073 + (GGGAA)n Simple_repeat Simple_repeat 1 73 0 3 628 328 232 42 42 chr11 5647783 5647855 -116196001 - PB1D10 SINE Alu -12 105 34 3 628 286 179 50 67 chr11 5647913 5647973 -116195883 - B1F2 SINE Alu -87 62 4 3 628 378 250 0 38 chr11 5648052 5648131 -116195725 + ID_B1 SINE B4 103 178 -46 3 628 236 271 109 50 chr11 5648131 5648153 -116195703 + B1_Mus1 SINE Alu 23 129 -19 3 628 1968 139 111 47 chr11 5648153 5648575 -116195281 + Lx5 LINE L1 5955 6403 -647 3 628 1336 143 67 0 chr11 5648565 5648788 -116195068 + Lx4B LINE L1 6462 6699 -359 3 628 1020 208 102 24 chr11 5648783 5649029 -116194827 + Lx5 LINE L1 6786 7050 0 3 628 520 292 15 0 chr11 5649036 5649173 -116194683 + RSINE1 SINE B4 5 143 -22 3 628 285 303 63 68 chr11 5649173 5649227 -116194629 + B2_Mm1a SINE B2 4 193 0 3 628 22 35 0 0 chr11 5649255 5649284 -116194572 + AT_rich Low_complexity Low_complexity 1 29 0 3 628 323 263 15 0 chr11 5649293 5649372 -116194484 - ID4 SINE ID -60 92 13 3 628 1037 231 30 0 chr11 5649427 5649630 -116194226 - B3 SINE B2 -7 209 1 3 628 743 251 44 16 chr11 5649661 5649843 -116194013 - ID_B1 SINE B4 -37 187 1 3 628 452 260 50 44 chr11 5649857 5650038 -116193818 + B3A SINE B2 1 182 -16 3 628 319 260 178 0 chr11 5650105 5650251 -116193605 + L1M4 LINE L1 3241 3412 -2734 3 628 1673 26 5 0 chr11 5650289 5650481 -116193375 - B2_Mm1t SINE B2 0 193 1 3 628 792 317 116 25 chr11 5650481 5650808 -116193048 - ORR1E LTR MaLR -2 357 1 3 628 1016 39 0 8 chr11 5650824 5650954 -116192902 + (GGAGA)n Simple_repeat Simple_repeat 2 130 0 3 628 226 306 0 0 chr11 5650958 5651019 -116192837 + RSINE1 SINE B4 3 63 -102 3 628 2720 129 249 7 chr11 5651019 5651277 -116192579 + RMER6C LTR ERVK 2 326 -364 3 628 2774 79 164 0 chr11 5651277 5651734 -116192122 + RLTR47_MM LTR ERV1 1 532 0 3 628 2720 129 249 7 chr11 5651734 5652030 -116191826 + RMER6C LTR ERVK 327 690 0 3 628 508 139 198 132 chr11 5652030 5652212 -116191644 + B2_Mm2 SINE B2 2 195 0 3 628 342 269 113 0 chr11 5652324 5652465 -116191391 + L1M4 LINE L1 3450 3606 -2540 3 628 679 172 26 0 chr11 5652545 5652661 -116191195 + B1_Mur2 SINE Alu 31 149 0 3 628 1825 70 8 0 chr11 5652685 5652926 -116190930 + RMER16 LTR ERVK 107 349 -184 3 628 266 81 0 0 chr11 5652926 5652963 -116190893 + RMER16 LTR ERVK 323 359 -174 3 628 220 161 0 51 chr11 5652965 5653024 -116190832 + GA-rich Low_complexity Low_complexity 1 56 0 3 628 350 225 56 0 chr11 5653151 5653222 -116190634 + ID_B1 SINE B4 103 177 -47 3 628 242 275 40 99 chr11 5653222 5653252 -116190604 + PB1D10 SINE Alu 22 116 -1 3 628 3181 186 70 37 chr11 5653425 5654125 -116189731 + RMER13A LTR ERVK 1 723 -137 3 628 532 259 17 0 chr11 5654156 5654272 -116189584 + RMER13A LTR ERVK 683 800 -60 3 628 441 310 91 39 chr11 5654315 5654523 -116189333 - B4A SINE B4 -68 224 6 3 628 1965 173 122 21 chr11 5654524 5654943 -116188913 + RMER4A LTR ERVK 1 461 -5 3 628 265 235 118 0 chr11 5654998 5655071 -116188785 - PB1D10 SINE Alu 0 117 35 3 628 185 94 0 30 chr11 5655071 5655104 -116188752 + (CATA)n Simple_repeat Simple_repeat 4 35 0 3 628 265 235 118 0 chr11 5655104 5655115 -116188741 - PB1D10 SINE Alu -83 34 24 3 628 1055 75 220 0 chr11 5655127 5655286 -116188570 + B2_Mm2 SINE B2 2 195 0 3 628 1543 198 89 25 chr11 5655370 5655697 -116188159 + ORR1C1 LTR MaLR 1 348 -30 3 628 526 278 6 80 chr11 5656433 5656609 -116187247 - RSINE1 SINE B4 0 165 3 3 628 316 280 72 36 chr11 5656836 5656947 -116186909 - PB1D9 SINE Alu 0 120 6 3 628 275 274 76 25 chr11 5657009 5657145 -116186711 - B3A SINE B2 -9 189 3 3 628 625 290 69 142 chr11 5657414 5657731 -116186125 - MTD LTR MaLR -13 406 113 3 628 371 262 0 12 chr11 5657721 5657806 -116186050 + B3 SINE B2 45 128 -88 3 628 2072 205 92 32 chr11 5657817 5658251 -116185605 + RMER16 LTR ERVK 1 465 -68 3 628 1530 58 5 0 chr11 5658251 5658442 -116185414 - B2_Mm1a SINE B2 0 193 2 3 628 2072 205 92 32 chr11 5658442 5658510 -116185346 + RMER16 LTR ERVK 466 533 0 3 628 402 224 19 44 chr11 5658738 5658855 -116185001 - PB1D9 SINE Alu -17 132 15 3 628 1027 262 102 52 chr11 5658879 5659392 -116184464 - Lx7 LINE L1 -2 7471 6890 3 628 308 273 190 25 chr11 5659396 5659444 -116184412 - B4A SINE B4 -14 278 226 3 628 590 237 99 0 chr11 5659444 5659575 -116184281 - B1_Mur1 SINE Alu -5 144 1 3 628 308 273 190 25 chr11 5659575 5659684 -116184172 - B4A SINE B4 -67 225 95 3 628 573 239 17 0 chr11 5659576 5659693 -116184163 - PB1D7 SINE Alu -1 119 1 3 628 326 231 70 61 chr11 5659700 5659815 -116184041 - PB1D10 SINE Alu -1 116 1 3 628 681 199 142 38 chr11 5659958 5660141 -116183715 + B3 SINE B2 2 203 -13 3 628 224 186 23 0 chr11 5660141 5660184 -116183672 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 628 1286 96 17 0 chr11 5660241 5660419 -116183437 + B2_Mm2 SINE B2 1 181 -14 3 628 505 167 30 40 chr11 5660438 5660538 -116183318 + B1_Mur4 SINE Alu 46 144 -6 3 628 394 152 0 0 chr11 5660533 5660592 -116183264 - B1_Mur4 SINE Alu -85 65 7 3 628 720 280 84 56 chr11 5660856 5661140 -116182716 - B4A SINE B4 0 292 1 3 628 435 38 0 0 chr11 5661166 5661219 -116182637 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 3 628 1151 64 0 0 chr11 5661221 5661362 -116182494 - B1_Mm SINE Alu -6 141 1 3 628 463 188 0 0 chr11 5661364 5661444 -116182412 - B1F SINE Alu 0 149 70 3 628 412 207 0 65 chr11 5661444 5661457 -116182399 - ID_B1 SINE B4 0 224 138 3 628 303 330 10 30 chr11 5661544 5661644 -116182212 - Charlie9 DNA MER1_type -2628 129 32 3 628 548 168 180 23 chr11 5662688 5662699 -116181157 - B1_Mur1 SINE Alu 0 149 141 3 628 207 0 0 0 chr11 5662699 5662722 -116181134 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 628 548 168 180 23 chr11 5662722 5662838 -116181018 - B1_Mur1 SINE Alu -9 140 2 3 628 315 0 0 0 chr11 5662900 5662935 -116180921 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 628 1360 25 0 0 chr11 5662935 5663094 -116180762 - B2_Mm1a SINE B2 -33 160 2 3 628 848 93 132 0 chr11 5663154 5663283 -116180573 + B1_Mus2 SINE Alu 2 147 0 3 628 520 218 0 19 chr11 5663304 5663407 -116180449 - B2_Mm2 SINE B2 -93 102 2 3 628 1025 249 66 24 chr11 5663465 5663779 -116180077 - MTD LTR MaLR 0 419 43 3 628 475 231 49 8 chr11 5663779 5663901 -116179955 - MTC-int LTR MaLR 0 1258 1132 3 628 591 266 43 25 chr11 5663913 5664094 -116179762 - B3 SINE B2 -1 215 9 3 628 463 200 0 53 chr11 5664163 5664258 -116179598 + B3 SINE B2 6 95 -121 3 628 1830 144 241 64 chr11 5664468 5664716 -116179140 - MT2A LTR ERVL 0 533 211 3 628 626 68 230 71 chr11 5664716 5664842 -116179014 + B1_Mm SINE Alu 2 147 0 3 628 1830 144 241 64 chr11 5664842 5665046 -116178810 - MT2A LTR ERVL -323 210 1 3 628 405 0 0 0 chr11 5665133 5665178 -116178678 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 628 708 219 58 0 chr11 5665185 5665340 -116178516 - B3A SINE B2 -32 166 3 3 628 499 266 43 0 chr11 5665712 5665851 -116178005 - B1F1 SINE Alu 0 149 5 3 628 279 0 0 0 chr11 5665914 5665945 -116177911 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 628 23 0 0 0 chr11 5666406 5666429 -116177427 + AT_rich Low_complexity Low_complexity 1 23 0 3 628 1152 186 50 10 chr11 5666429 5666630 -116177226 - B3 SINE B2 -7 209 1 3 628 495 309 84 71 chr11 5666630 5666856 -116177000 - B4A SINE B4 -62 230 2 3 628 22 80 0 0 chr11 5666916 5666966 -116176890 + AT_rich Low_complexity Low_complexity 1 50 0 3 628 441 353 26 26 chr11 5667039 5667193 -116176663 + RSINE1 SINE B4 6 159 -6 3 628 567 132 0 0 chr11 5667205 5667296 -116176560 + (TA)n Simple_repeat Simple_repeat 1 91 0 3 628 240 319 0 27 chr11 5667368 5667442 -116176414 + B3A SINE B2 4 75 -123 3 628 1340 99 0 11 chr11 5667457 5667482 -116176374 - B2_Mm2 SINE B2 -13 182 159 3 628 252 0 0 0 chr11 5667482 5667510 -116176346 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 628 1340 99 0 11 chr11 5667510 5667667 -116176189 - B2_Mm2 SINE B2 -37 158 2 3 628 1230 48 0 0 chr11 5668178 5668324 -116175532 - B1_Mm SINE Alu 0 147 2 3 628 384 294 58 8 chr11 5668574 5668694 -116175162 + B3 SINE B2 27 152 -64 3 628 1811 199 37 6 chr11 5669446 5669769 -116174087 - MTD LTR MaLR -85 334 2 3 628 441 200 30 185 chr11 5669895 5670014 -116173842 + PB1D9 SINE Alu 1 100 -20 3 628 3328 58 0 2 chr11 5670014 5670411 -116173445 - MTA_Mm LTR MaLR 0 396 1 3 628 441 200 30 185 chr11 5670411 5670426 -116173430 + PB1D9 SINE Alu 101 114 -6 3 628 251 250 141 103 chr11 5670426 5670444 -116173412 + B4A SINE B4 206 243 -49 3 628 2715 113 85 148 chr11 5670959 5671190 -116172666 + RMER4B LTR ERVK 1 236 -349 3 628 1107 88 7 0 chr11 5671190 5671337 -116172519 + B1_Mus1 SINE Alu 1 148 0 3 628 2715 113 85 148 chr11 5671337 5671727 -116172129 + RMER4B LTR ERVK 237 583 -2 3 628 891 251 84 115 chr11 5671734 5671916 -116171940 - MTE2a LTR MaLR 0 379 196 4 628 853 248 14 28 chr11 5671916 5672132 -116171724 - B3 SINE B2 0 216 4 4 628 891 251 84 115 chr11 5672132 5672340 -116171516 - MTE2a LTR MaLR -184 195 1 4 628 2997 177 6 12 chr11 5672435 5672949 -116170907 - RLTR20B1 LTR ERVK -52 511 1 4 628 6753 131 44 14 chr11 5672949 5673119 -116170737 - MYSERV16_I-int LTR ERVK 0 2326 2153 4 628 213 65 0 0 chr11 5673119 5673150 -116170706 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 628 1161 72 0 0 chr11 5673150 5673288 -116170568 - B1_Mus2 SINE Alu -9 138 1 4 628 6753 131 44 14 chr11 5673288 5674344 -116169512 - MYSERV16_I-int LTR ERVK -174 2152 1063 4 628 3105 153 109 50 chr11 5674341 5674494 -116169362 - MYSERV16_I-int LTR ERVK -1393 933 799 4 628 311 88 0 0 chr11 5674494 5674551 -116169305 - L1Md_F3 LINE L1 0 6584 6528 4 628 3105 153 109 50 chr11 5674551 5674831 -116169025 - MYSERV16_I-int LTR ERVK -1528 798 481 4 628 1428 81 11 5 chr11 5674831 5675018 -116168838 - B2_Mm2 SINE B2 -7 188 1 4 628 3105 153 109 50 chr11 5675018 5675269 -116168587 - MYSERV16_I-int LTR ERVK -1846 480 207 4 628 371 132 0 29 chr11 5675263 5675333 -116168523 + MYSERV16_I-int LTR ERVK 1362 1429 -897 4 628 2460 172 73 76 chr11 5675968 5676477 -116167379 - RLTR20B1 LTR ERVK 0 563 57 4 628 3175 66 0 10 chr11 5676477 5676877 -116166979 + MTA_Mm LTR MaLR 1 396 0 4 628 2460 172 73 76 chr11 5676877 5676932 -116166924 - RLTR20B1 LTR ERVK -507 56 1 4 628 191 36 0 35 chr11 5677346 5677375 -116166481 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4 628 484 224 37 18 chr11 5677388 5677497 -116166359 + PB1D10 SINE Alu 7 117 0 4 628 429 272 9 6 chr11 5677501 5677608 -116166248 + PB1D10 SINE Alu 13 118 -31 4 628 1214 68 0 0 chr11 5677853 5678000 -116165856 - B1_Mus1 SINE Alu 0 148 2 4 628 856 176 176 0 chr11 5678574 5678756 -116165100 + B3 SINE B2 3 216 0 4 628 1136 149 37 16 chr11 5678780 5678971 -116164885 + B2_Mm2 SINE B2 1 195 0 4 628 239 300 157 8 chr11 5679231 5679352 -116164504 + B1F SINE Alu 1 139 -10 4 628 281 221 148 49 chr11 5679389 5679470 -116164386 - 5S rRNA rRNA -32 89 1 4 628 1003 164 0 0 chr11 5679617 5679763 -116164093 + B1_Mur2 SINE Alu 3 148 -1 4 628 181 289 22 0 chr11 5679839 5679884 -116163972 - L4 LINE RTE -412 1617 1572 4 628 284 48 24 0 chr11 5680813 5680855 -116163001 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 4 628 186 43 0 0 chr11 5681024 5681047 -116162809 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 628 1106 35 7 65 chr11 5681907 5682061 -116161795 - B1_Mus1 SINE Alu 0 148 4 4 628 1259 146 73 0 chr11 5682939 5683131 -116160725 - B3 SINE B2 -10 206 1 4 628 327 221 165 21 chr11 5683363 5683460 -116160396 - PB1D9 SINE Alu -9 111 1 4 628 298 82 0 76 chr11 5684779 5684806 -116159050 - B2_Mm2 SINE B2 0 195 173 4 628 1667 26 0 0 chr11 5684806 5684995 -116158861 + B2_Mm1a SINE B2 2 190 -3 4 628 298 82 0 76 chr11 5684995 5685033 -116158823 - B2_Mm2 SINE B2 -23 172 135 4 628 216 233 189 14 chr11 5685192 5685266 -116158590 - PB1D10 SINE Alu -2 115 29 4 628 321 256 94 35 chr11 5685608 5685693 -116158163 + ID_B1 SINE B4 82 171 -53 4 628 291 299 78 70 chr11 5685693 5685723 -116158133 + B1F2 SINE Alu 1 116 -33 4 628 516 230 109 33 chr11 5686555 5686739 -116157117 - CYRA11_Mm Unknown Y-chromosome -248 369 172 4 628 913 130 43 6 chr11 5686578 5686740 -116157116 + URR1A DNA MER1_type 59 226 0 4 628 961 228 79 23 chr11 5686773 5687038 -116156818 + B4A SINE B4 1 280 -12 4 628 1107 95 0 20 chr11 5687138 5687288 -116156568 - B1_Mus1 SINE Alu 0 148 2 4 628 626 191 103 0 chr11 5687309 5687435 -116156421 - B1_Mur2 SINE Alu -6 143 5 4 628 937 189 162 0 chr11 5687438 5687623 -116156233 - B3 SINE B2 -1 215 1 4 628 267 194 265 51 chr11 5687632 5687730 -116156126 - PB1D9 SINE Alu 0 120 2 4 628 471 291 46 7 chr11 5687770 5687915 -116155941 - MTE2a LTR MaLR 0 419 255 4 628 336 278 73 9 chr11 5687961 5688070 -116155786 - PB1D10 SINE Alu 0 117 2 4 628 371 208 377 0 chr11 5688101 5688207 -116155649 - B1_Mus2 SINE Alu -1 146 1 4 628 203 0 0 36 chr11 5689604 5689632 -116154224 + (CTTG)n Simple_repeat Simple_repeat 2 28 0 4 628 453 148 123 0 chr11 5689637 5689718 -116154138 - B1_Mur1 SINE Alu -25 124 34 4 628 183 276 76 38 chr11 5690000 5690079 -116153777 + L4 LINE RTE 1486 1567 -462 4 628 246 305 146 55 chr11 5690017 5690317 -116153539 + L2b LINE L2 2829 3164 -211 4 628 236 295 115 0 chr11 5690325 5690386 -116153470 - B3 SINE B2 -52 164 97 4 628 561 15 0 0 chr11 5690460 5690526 -116153330 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 628 222 91 0 0 chr11 5691464 5691497 -116152359 + (T)n Simple_repeat Simple_repeat 1 33 0 4 628 1270 41 7 0 chr11 5691498 5691645 -116152211 - B1_Mus1 SINE Alu 0 148 1 4 628 660 176 104 0 chr11 5693062 5693187 -116150669 + B1_Mur2 SINE Alu 4 141 -8 4 628 302 310 83 45 chr11 5693207 5693339 -116150517 + L1M4 LINE L1 153 289 -6253 4 628 612 202 9 17 chr11 5694565 5694681 -116149175 + PB1D9 SINE Alu 6 120 0 4 628 345 197 13 38 chr11 5695081 5695160 -116148696 - ID2 SINE ID -2 81 5 4 628 1106 189 44 0 chr11 5696127 5696333 -116147523 - B3 SINE B2 0 216 2 4 628 428 195 0 35 chr11 5696342 5696427 -116147429 - PB1D10 SINE Alu 0 117 36 4 628 683 45 0 74 chr11 5696412 5696507 -116147349 + B1_Mus2 SINE Alu 54 141 -6 4 628 294 167 11 161 chr11 5696424 5696517 -116147339 + ID_B1 SINE B4 146 224 0 4 628 989 220 80 0 chr11 5698429 5698629 -116145227 - B3 SINE B2 0 216 1 4 628 219 69 0 0 chr11 5698637 5698666 -116145190 + (T)n Simple_repeat Simple_repeat 1 29 0 4 628 1300 20 0 0 chr11 5698666 5698813 -116145043 - B1_Mm SINE Alu 0 147 1 4 628 493 176 42 92 chr11 5700835 5700954 -116142902 + B1_Mus2 SINE Alu 4 116 -31 4 628 592 256 124 6 chr11 5704557 5704734 -116139122 + B3A SINE B2 1 198 0 4 628 215 235 98 0 chr11 5704765 5704816 -116139040 - ID_B1 SINE B4 -76 148 93 4 628 239 240 40 0 chr11 5704774 5704824 -116139032 - B1_Mur4 SINE Alu -94 56 5 4 628 216 0 0 0 chr11 5704835 5704859 -116138997 + (T)n Simple_repeat Simple_repeat 1 24 0 4 628 1129 52 0 7 chr11 5704874 5705011 -116138845 - B1_Mm SINE Alu -10 137 2 4 628 491 178 41 11 chr11 5705017 5705123 -116138733 - B1_Mur1 SINE Alu -3 146 39 4 628 1123 88 0 0 chr11 5705170 5705318 -116138538 + B1_Mus1 SINE Alu 1 148 0 4 628 689 293 29 0 chr11 5705323 5705497 -116138359 + B3A SINE B2 1 179 -19 4 628 276 236 51 2 chr11 5705583 5705681 -116138175 + L1M4 LINE L1 3881 3982 -2164 4 628 594 248 159 13 chr11 5705800 5706127 -116137729 + L1M4 LINE L1 3992 4387 -1759 4 628 536 316 19 19 chr11 5706281 5706442 -116137414 + RSINE1 SINE B4 3 163 -2 4 628 261 75 0 0 chr11 5706449 5706489 -116137367 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 628 1109 220 0 9 chr11 5706522 5706738 -116137118 + B3 SINE B2 3 216 0 4 628 236 180 197 0 chr11 5706742 5706803 -116137053 + L1M4 LINE L1 4465 4537 -1609 4 628 2824 58 27 14 chr11 5706977 5707346 -116136510 - MTB_Mm LTR MaLR -33 374 1 4 628 261 288 115 39 chr11 5707392 5707652 -116136204 + L1M4 LINE L1 4723 5002 -1144 4 628 321 173 0 19 chr11 5707658 5707711 -116136145 + B4 SINE B4 26 77 -215 4 628 3004 148 24 18 chr11 5707726 5708219 -116135637 + RMER19B LTR ERVK 147 642 -260 4 628 4421 147 73 33 chr11 5708219 5708691 -116135165 + RLTR13B1 LTR ERVK 1 509 -384 4 628 7017 80 16 6 chr11 5708691 5709640 -116134216 - RLTR13A2 LTR ERVK 0 958 1 4 628 4421 147 73 33 chr11 5709640 5710025 -116133831 + RLTR13B1 LTR ERVK 510 893 0 4 628 1772 106 27 8 chr11 5710027 5710284 -116133572 + RMER19B LTR ERVK 641 902 0 4 628 2557 128 13 30 chr11 5710284 5710703 -116133153 + L1_Mur3 LINE L1 3827 4244 -1636 4 628 3029 166 78 17 chr11 5710703 5711284 -116132572 + RLTR18 LTR ERVK 1 616 0 4 628 2557 128 13 30 chr11 5711284 5711339 -116132517 + L1_Mur3 LINE L1 4245 4293 -1587 4 628 1512 22 33 6 chr11 5711343 5711524 -116132332 + B2_Mm2 SINE B2 2 187 -8 4 628 424 264 62 28 chr11 5711588 5711767 -116132089 + L1MD LINE L1 2762 2946 -3200 4 628 228 292 31 82 chr11 5711767 5711779 -116132077 + MT2B LTR ERVL 155 161 -440 4 628 293 313 92 50 chr11 5711779 5711920 -116131936 + PB1D10 SINE Alu 3 149 0 4 628 949 178 37 69 chr11 5711931 5712148 -116131708 + B3 SINE B2 1 210 -6 4 628 25 0 0 0 chr11 5712152 5712177 -116131679 + AT_rich Low_complexity Low_complexity 1 25 0 4 628 658 204 35 28 chr11 5712629 5712770 -116131086 + B1_Mur1 SINE Alu 2 143 -6 4 628 1335 74 0 28 chr11 5712781 5712942 -116130914 + B2_Mm2 SINE B2 1 161 -34 4 628 441 0 0 0 chr11 5712942 5712991 -116130865 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 628 1335 74 0 28 chr11 5712991 5713010 -116130846 + B2_Mm2 SINE B2 162 176 -19 4 628 606 223 9 0 chr11 5713114 5713226 -116130630 + B3 SINE B2 99 211 -5 4 628 289 306 146 17 chr11 5713285 5713518 -116130338 + L1MC LINE L1 3695 3957 -2189 4 628 340 293 48 91 chr11 5713522 5713687 -116130169 + RSINE1 SINE B4 4 161 -4 4 628 314 212 104 15 chr11 5713710 5713777 -116130079 + L1MD LINE L1 3946 4018 -2128 4 628 1030 177 28 37 chr11 5713790 5714007 -116129849 + B3 SINE B2 2 216 0 4 628 797 141 96 7 chr11 5714012 5714148 -116129708 + B1_Mus1 SINE Alu 1 148 0 4 628 1229 55 0 0 chr11 5714154 5714300 -116129556 + B1_Mus2 SINE Alu 2 147 0 4 628 672 120 0 10 chr11 5714361 5714462 -116129394 + BC1_Mm scRNA scRNA 1 100 -52 4 628 660 263 97 33 chr11 5714467 5714766 -116129090 + L1MD LINE L1 4031 4348 -1798 4 628 1200 83 6 20 chr11 5715161 5715512 -116128344 + (TTTC)n Simple_repeat Simple_repeat 1 345 0 4 628 975 130 0 22 chr11 5715512 5715693 -116128163 + CT-rich Low_complexity Low_complexity 2 178 0 4 628 240 238 0 0 chr11 5715682 5715745 -116128111 + T-rich Low_complexity Low_complexity 1 63 0 4 628 567 263 9 0 chr11 5715748 5715862 -116127994 + B3 SINE B2 90 204 -12 4 628 635 244 104 13 chr11 5715918 5716072 -116127784 + ID_B1 SINE B4 44 211 -13 4 628 2105 130 22 50 chr11 5716478 5716842 -116127014 - ORR1B1 LTR MaLR 0 394 41 5 628 476 158 119 10 chr11 5717350 5717481 -116126375 - RMER1B Other Other -11 1055 934 5 628 1351 225 144 7 chr11 5717643 5718025 -116125831 - RMER1B Other Other -177 889 482 5 628 1657 222 75 42 chr11 5718094 5718602 -116125254 - RLTR19 LTR ERVK 0 715 182 5 628 1121 36 66 0 chr11 5718602 5718739 -116125117 - B1_Mm SINE Alu 0 147 2 5 628 1350 89 10 16 chr11 5718739 5718932 -116124924 - RLTR19 LTR ERVK -306 193 2 5 628 753 270 33 0 chr11 5718932 5719173 -116124683 - RMER1B Other Other -832 234 61 5 628 180 0 0 0 chr11 5719192 5719212 -116124644 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 5 628 1150 212 104 86 chr11 5719212 5719344 -116124512 + MT2B LTR ERVL 274 342 -259 5 628 2796 157 28 14 chr11 5719344 5719842 -116124014 + RLTR16 LTR ERVK 1 505 0 5 628 1150 263 15 67 chr11 5719842 5720077 -116123779 + MT2B LTR ERVL 343 561 -40 5 628 488 16 16 0 chr11 5720077 5720138 -116123718 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 5 628 1150 263 15 67 chr11 5720138 5720174 -116123682 + MT2B LTR ERVL 562 597 -4 5 628 1175 135 200 0 chr11 5720177 5720485 -116123371 + MERVL_2A-int LTR ERVL 1 370 -5391 5 628 758 151 0 0 chr11 5720498 5720617 -116123239 + RLTR19A LTR ERVK 350 468 -28 5 628 447 161 22 22 chr11 5720608 5720697 -116123159 + ORR1C1 LTR MaLR 34 122 -256 5 628 2399 132 167 16 chr11 5720698 5721129 -116122727 + RLTR19A LTR ERVK 1 496 0 5 628 1954 205 93 42 chr11 5721139 5721676 -116122180 - RMER4B LTR ERVK -60 525 1 5 628 1264 132 122 42 chr11 5721676 5721903 -116121953 + ORR1C1 LTR MaLR 125 370 -8 5 628 4520 173 60 47 chr11 5721907 5722138 -116121718 + MERVL_2A-int LTR ERVL 366 610 -5151 5 628 2521 83 3 9 chr11 5722138 5722467 -116121389 - ORR1A2 LTR MaLR 0 327 1 5 628 12790 161 79 32 chr11 5722467 5722503 -116121353 + MERVL_2A-int LTR ERVL 611 638 -5123 5 628 1147 55 7 33 chr11 5722503 5722654 -116121202 + B1_Mus2 SINE Alu 1 147 0 5 628 12790 161 79 32 chr11 5722654 5724202 -116119654 + MERVL_2A-int LTR ERVL 639 2258 -3503 5 628 1200 50 0 0 chr11 5724202 5724342 -116119514 + B1_Mm SINE Alu 2 141 -6 5 628 240 111 0 0 chr11 5724343 5724388 -116119468 + (CTAA)n Simple_repeat Simple_repeat 4 48 0 5 628 1194 63 0 0 chr11 5724395 5724537 -116119319 + B1_Mus2 SINE Alu 2 143 -4 5 628 338 0 24 0 chr11 5724539 5724581 -116119275 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 628 1152 59 0 0 chr11 5724587 5724723 -116119133 + B1_Mm SINE Alu 2 137 -10 5 628 330 26 0 0 chr11 5724723 5724762 -116119094 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 628 12790 151 110 28 chr11 5724762 5725615 -116118241 + MERVL_2A-int LTR ERVL 2259 3212 -2549 5 628 6974 164 96 42 chr11 5725614 5726303 -116117553 + MERVL_2A-int LTR ERVL 3444 4187 -1574 5 628 1710 133 118 115 chr11 5726303 5726587 -116117269 + ORR1B2 LTR MaLR 1 324 -43 5 628 1288 34 0 0 chr11 5726587 5726734 -116117122 + B1_Mus2 SINE Alu 1 147 0 5 628 1710 133 118 115 chr11 5726734 5726815 -116117041 + ORR1B2 LTR MaLR 325 367 0 5 628 6974 164 96 42 chr11 5726815 5727571 -116116285 + MERVL_2A-int LTR ERVL 4188 4966 -795 5 628 819 84 8 16 chr11 5727571 5727692 -116116164 + B2_Mm1a SINE B2 3 122 -71 5 628 378 20 20 0 chr11 5727678 5727727 -116116129 + MTB LTR MaLR 344 393 -7 5 628 1152 95 0 0 chr11 5730381 5730528 -116113328 - B1_Mus2 SINE Alu 0 147 1 5 628 300 194 148 0 chr11 5730528 5730636 -116113220 - L1MD1 LINE L1 -4 6238 6115 5 628 362 138 0 0 chr11 5730638 5730696 -116113160 + B1_Mur1 SINE Alu 65 122 -27 5 628 271 338 39 25 chr11 5731196 5731341 -116112515 - MIRc SINE MIR -38 170 28 5 628 403 272 9 17 chr11 5732374 5732490 -116111366 + PB1D10 SINE Alu 3 117 0 5 628 740 88 119 8 chr11 5732630 5732756 -116111100 + B1_Mus1 SINE Alu 9 148 0 5 628 418 301 49 41 chr11 5732778 5732970 -116110886 + B3A SINE B2 2 189 -6 5 628 306 288 117 17 chr11 5732985 5733105 -116110751 + ID_B1 SINE B4 91 222 -2 5 628 1506 51 17 0 chr11 5733262 5733439 -116110417 + B2_Mm2 SINE B2 2 181 -14 5 628 308 247 56 11 chr11 5733476 5733566 -116110290 + PB1D7 SINE Alu 17 110 -10 5 628 1008 94 7 20 chr11 5734329 5734481 -116109375 - B1_Mur4 SINE Alu 0 150 1 5 628 246 326 61 23 chr11 5734553 5734685 -116109171 + L2b LINE L2 3052 3188 -187 5 628 234 227 0 0 chr11 5736630 5736674 -116107182 - B1_Mur3 SINE Alu -39 110 67 5 628 1262 34 0 13 chr11 5736920 5737069 -116106787 + B1_Mus2 SINE Alu 1 147 0 5 628 2203 56 4 4 chr11 5738287 5738558 -116105298 + L1_Mus1 LINE L1 6297 6567 0 5 628 30 0 0 0 chr11 5738939 5738969 -116104887 + AT_rich Low_complexity Low_complexity 1 30 0 5 628 898 227 43 19 chr11 5738975 5739186 -116104670 - B3 SINE B2 0 216 1 5 628 739 168 249 0 chr11 5739195 5739368 -116104488 - B3 SINE B2 0 216 1 5 628 4547 60 9 2 chr11 5740704 5741260 -116102596 + LTRIS2 LTR ERV1 5 564 0 5 628 270 304 33 0 chr11 5741262 5741354 -116102502 - MLT1D LTR MaLR -8 497 403 5 628 401 232 93 21 chr11 5741755 5741852 -116102004 - PB1D10 SINE Alu -11 106 3 5 628 3730 97 31 59 chr11 5742248 5742278 -116101578 + LTRIS2 LTR ERV1 1 23 -541 5 628 1503 58 16 5 chr11 5742278 5742467 -116101389 + B2_Mm2 SINE B2 2 192 -3 5 628 3730 97 31 59 chr11 5742467 5742742 -116101114 + LTRIS2 LTR ERV1 24 291 -273 5 628 1282 27 0 0 chr11 5742742 5742889 -116100967 - B1_Mus2 SINE Alu 0 147 1 5 628 3730 97 31 59 chr11 5742889 5743162 -116100694 + LTRIS2 LTR ERV1 292 564 0 5 628 2170 112 162 3 chr11 5743211 5743551 -116100305 + ORR1B1 LTR MaLR 1 394 0 5 628 451 243 103 0 chr11 5743551 5743658 -116100198 + PB1D9 SINE Alu 3 120 0 5 628 1192 68 7 0 chr11 5743843 5743989 -116099867 - B1_Mus1 SINE Alu 0 148 2 5 628 262 373 16 23 chr11 5744301 5744430 -116099426 - Tigger5 DNA MER2_type -1 2405 2278 5 628 4496 64 46 4 chr11 5744502 5745065 -116098791 - LTRIS_Mus LTR ERV1 0 587 1 5 628 648 26 0 0 chr11 5745179 5745257 -116098599 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 5 628 720 204 0 21 chr11 5745257 5745390 -116098466 - B1_Mus2 SINE Alu -6 141 11 5 628 725 191 173 42 chr11 5745405 5745596 -116098260 - B3 SINE B2 0 216 1 5 628 258 303 79 0 chr11 5745606 5745695 -116098161 - PB1D7 SINE Alu -20 100 5 5 628 459 209 11 0 chr11 5746250 5746341 -116097515 - RSINE1 SINE B4 -72 93 2 5 628 258 102 57 75 chr11 5746341 5746386 -116097470 + MLT1H LTR MaLR 137 180 -369 5 628 240 111 0 0 chr11 5746475 5746520 -116097336 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 628 283 260 125 0 chr11 5746760 5746856 -116097000 - L2 LINE L2 -480 2939 2832 5 628 2127 125 3 55 chr11 5747125 5747472 -116096384 + ORR1A4 LTR MaLR 1 329 0 5 628 1491 78 5 0 chr11 5748226 5748418 -116095438 + B2_Mm1t SINE B2 1 193 0 5 628 1176 69 7 0 chr11 5748544 5748689 -116095167 + B1_Mus1 SINE Alu 2 147 -1 5 628 351 0 0 0 chr11 5749744 5749783 -116094073 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 628 426 187 278 11 chr11 5750146 5750326 -116093530 - RMER4B LTR ERVK 0 585 357 5 628 353 283 31 132 chr11 5750298 5750360 -116093496 - RMER19B LTR ERVK -304 307 257 5 628 1223 35 0 0 chr11 5750360 5750501 -116093355 + B1_Mus2 SINE Alu 1 141 -6 5 628 207 0 0 0 chr11 5750504 5750527 -116093329 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 628 2137 134 103 56 chr11 5750527 5750973 -116092883 - RMER19B LTR ERVK -436 466 1 5 628 528 81 0 0 chr11 5751014 5751088 -116092768 + (GGA)n Simple_repeat Simple_repeat 3 76 0 5 628 1110 175 69 9 chr11 5751110 5751341 -116092515 - RMER4B LTR ERVK -324 261 17 5 628 215 278 0 18 chr11 5752065 5752120 -116091736 + ID4_ SINE ID 22 75 -8 5 628 228 250 0 0 chr11 5752121 5752165 -116091691 + polypurine Low_complexity Low_complexity 4 47 0 5 628 243 0 0 0 chr11 5752563 5752590 -116091266 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 5 628 719 220 11 0 chr11 5752944 5753121 -116090735 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 5 628 768 209 0 4 chr11 5753134 5753367 -116090489 + (TA)n Simple_repeat Simple_repeat 1 231 0 5 628 633 181 118 22 chr11 5753380 5753516 -116090340 - B1_Mur3 SINE Alu 0 149 1 5 628 342 0 0 0 chr11 5753523 5753561 -116090295 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 628 1109 108 0 0 chr11 5753561 5753720 -116090136 - B2_Mm2 SINE B2 -32 161 1 5 628 1026 123 206 6 chr11 5753742 5753922 -116089934 - B3 SINE B2 0 216 1 5 628 851 224 64 15 chr11 5753930 5754134 -116089722 - B3 SINE B2 0 216 3 5 628 1036 135 39 22 chr11 5754147 5754329 -116089527 - B2_Mm2 SINE B2 -6 189 5 5 628 234 224 104 0 chr11 5754359 5754426 -116089430 - L1M LINE L1 -723 5401 5328 5 628 189 0 0 0 chr11 5754453 5754474 -116089382 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 628 426 309 79 0 chr11 5754477 5754616 -116089240 - B3 SINE B2 -19 197 48 5 628 250 299 0 0 chr11 5754671 5754738 -116089118 - ID4 SINE ID -3 80 14 5 628 195 69 0 0 chr11 5754844 5754873 -116088983 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 628 607 99 11 0 chr11 5754873 5754964 -116088892 - B1_Mus1 SINE Alu -8 140 49 5 628 307 101 13 115 chr11 5754900 5754978 -116088878 - MT2B LTR ERVL -337 264 195 5 628 1197 68 0 0 chr11 5755226 5755372 -116088484 + B1_Mus1 SINE Alu 2 147 -1 5 628 30 0 0 0 chr11 5755373 5755403 -116088453 + AT_rich Low_complexity Low_complexity 1 30 0 5 628 255 274 13 159 chr11 5755439 5755605 -116088251 + MT2B2 LTR ERVL 123 265 -319 5 628 551 179 24 0 chr11 5755506 5755612 -116088244 + PB1D10 SINE Alu 9 116 -1 5 628 183 267 48 32 chr11 5756942 5757004 -116086852 + MIRb SINE MIR 112 174 -94 5 628 520 260 74 30 chr11 5757313 5757448 -116086408 - RSINE1 SINE B4 -22 143 3 5 628 259 31 0 0 chr11 5757770 5757802 -116086054 - ORR1B2 LTR MaLR -23 355 324 5 628 1274 27 0 7 chr11 5757829 5757976 -116085880 - B1_Mus2 SINE Alu 0 147 2 5 628 1615 157 36 63 chr11 5757976 5758309 -116085547 - ORR1B2 LTR MaLR -43 324 1 5 628 369 0 0 0 chr11 5758659 5758700 -116085156 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 628 642 237 43 22 chr11 5758702 5758840 -116085016 - B1_Mus1 SINE Alu -7 141 1 6 628 1014 196 53 10 chr11 5758851 5759057 -116084799 - B3 SINE B2 0 216 2 6 628 514 270 27 0 chr11 5759062 5759173 -116084683 - PB1D7 SINE Alu -5 115 2 6 628 1170 77 0 0 chr11 5760559 5760702 -116083154 + B1_Mus1 SINE Alu 1 143 -5 6 628 219 36 0 0 chr11 5760816 5760844 -116083012 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 628 180 97 0 0 chr11 5763357 5763388 -116080468 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 6 628 631 200 40 2 chr11 5765868 5766081 -116077775 + L1_Mur2 LINE L1 888 1103 -6609 6 629 467 252 179 0 chr11 5770888 5771011 -116072845 - B1_Mur1 SINE Alu -4 145 1 6 629 201 235 0 0 chr11 5771672 5771723 -116072133 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 6 629 255 133 0 0 chr11 5771738 5771783 -116072073 + (GGA)n Simple_repeat Simple_repeat 2 46 0 6 629 435 19 0 0 chr11 5773190 5773242 -116070614 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 629 471 273 34 57 chr11 5775298 5775360 -116068496 + MLT1B LTR MaLR 196 254 -136 6 629 1422 154 18 0 chr11 5775360 5775581 -116068275 + URR1A DNA MER1_type 2 226 0 6 629 471 273 34 57 chr11 5775581 5775693 -116068163 + MLT1B LTR MaLR 255 365 -25 6 629 740 181 16 0 chr11 5775785 5775912 -116067944 - B1_Mur2 SINE Alu 0 149 21 6 629 218 302 147 67 chr11 5777322 5777560 -116066296 + L2 LINE L2 2806 3062 -357 6 629 186 143 0 0 chr11 5777843 5777878 -116065978 + (T)n Simple_repeat Simple_repeat 1 35 0 6 629 470 245 101 34 chr11 5778807 5778955 -116064901 - B3 SINE B2 0 216 59 6 629 1017 52 0 42 chr11 5779056 5779198 -116064658 - B1_Mm SINE Alu -11 136 1 6 629 233 319 53 0 chr11 5779439 5779552 -116064304 - L1M4c LINE L1 -4612 1772 1654 6 629 814 222 103 5 chr11 5779554 5779749 -116064107 - ID_B1 SINE B4 -3 221 8 6 629 245 216 112 11 chr11 5779768 5779854 -116064002 - PB1D10 SINE Alu -1 116 22 6 629 404 128 90 0 chr11 5779854 5779932 -116063924 - MTD LTR MaLR 0 419 335 6 629 644 306 36 130 chr11 5779951 5780042 -116063814 - L1M4c LINE L1 -5128 1256 1184 6 629 659 235 57 57 chr11 5780042 5780254 -116063602 - B3 SINE B2 -4 212 1 6 629 644 306 36 130 chr11 5780254 5780572 -116063284 - L1M4c LINE L1 -5201 1183 875 6 629 198 0 0 0 chr11 5780572 5780594 -116063262 + (TCC)n Simple_repeat Simple_repeat 2 23 0 6 629 644 306 36 130 chr11 5780594 5780682 -116063174 - L1M4c LINE L1 -5510 874 805 6 629 22 70 0 0 chr11 5780725 5780768 -116063088 + AT_rich Low_complexity Low_complexity 1 43 0 6 629 533 165 149 0 chr11 5780827 5780948 -116062908 - B1_Mur4 SINE Alu -1 149 11 6 629 517 227 0 0 chr11 5781185 5781282 -116062574 + B3 SINE B2 2 98 -118 6 629 333 339 0 0 chr11 5781621 5781733 -116062123 - PB1 SINE Alu -15 112 1 6 629 405 0 0 0 chr11 5781864 5781909 -116061947 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 6 629 1099 30 0 0 chr11 5781909 5782042 -116061814 - B1_Mus2 SINE Alu -13 134 2 6 629 1581 152 94 31 chr11 5782051 5782403 -116061453 - ORR1D1 LTR MaLR 0 374 1 6 629 336 220 111 68 chr11 5783152 5783269 -116060587 - MER74B LTR ERVL -415 207 86 6 629 447 264 25 63 chr11 5783301 5783459 -116060397 + RSINE1 SINE B4 12 163 -2 6 629 237 227 50 62 chr11 5783656 5783736 -116060120 - ID4 SINE ID -3 80 2 6 629 1719 140 67 49 chr11 5783761 5784152 -116059704 - RMER10B LTR ERVL 0 398 1 6 629 719 278 63 50 chr11 5784171 5784410 -116059446 - B4 SINE B4 -2 290 49 6 629 1034 210 4 74 chr11 5784453 5784684 -116059172 - B3 SINE B2 0 216 2 6 629 451 267 8 22 chr11 5784704 5784838 -116059018 + L1MCa LINE L1 6 137 -6371 6 629 601 229 20 46 chr11 5785413 5785564 -116058292 + B1_Mur2 SINE Alu 3 149 0 6 629 276 30 0 0 chr11 5785589 5785622 -116058234 + (TCC)n Simple_repeat Simple_repeat 2 34 0 6 629 293 232 85 0 chr11 5785623 5785705 -116058151 - Lx8 LINE L1 -248 7225 7137 6 629 499 244 188 11 chr11 5785880 5786066 -116057790 - RMER21B LTR ERV1 -275 567 349 6 629 688 214 97 38 chr11 5786508 5786693 -116057163 - B3 SINE B2 -17 199 4 6 629 717 247 44 0 chr11 5787056 5787238 -116056618 - B3A SINE B2 -7 191 2 6 629 200 34 0 33 chr11 5787789 5787819 -116056037 + (TTA)n Simple_repeat Simple_repeat 2 30 0 6 629 889 251 15 0 chr11 5787825 5788028 -116055828 - B3 SINE B2 -10 206 1 6 629 734 100 1 189 chr11 5788338 5788510 -116055346 + B1_Mus1 SINE Alu 6 142 -6 6 629 1556 27 0 0 chr11 5788554 5788740 -116055116 - B2_Mm1a SINE B2 -6 187 2 6 629 486 0 0 0 chr11 5789461 5789515 -116054341 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 629 845 282 109 7 chr11 5789936 5790239 -116053617 + MER31A LTR ERV1 148 481 -4 6 629 344 145 130 0 chr11 5790231 5790300 -116053556 - PB1D10 SINE Alu 0 117 40 6 629 546 16 0 0 chr11 5790313 5790376 -116053480 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 629 705 206 14 34 chr11 5790967 5791113 -116052743 - B1_Mur1 SINE Alu -1 148 6 6 629 264 314 68 97 chr11 5791013 5791189 -116052667 - MT2B LTR ERVL -341 260 90 6 629 954 0 0 0 chr11 5791605 5791711 -116052145 + (CTCTG)n Simple_repeat Simple_repeat 1 106 0 6 629 433 213 199 11 chr11 5791806 5791982 -116051874 + RMER5 LTR ERV1 72 280 -254 6 629 185 342 0 40 chr11 5792226 5792302 -116051554 - L2 LINE L2 -3332 87 15 6 629 230 211 18 0 chr11 5792834 5792891 -116050965 - MER67C LTR ERV1 -9 702 645 6 629 1119 271 86 17 chr11 5792999 5793407 -116050449 - MER67C LTR ERV1 -258 453 15 6 629 896 209 23 45 chr11 5793407 5793435 -116050421 - B3 SINE B2 0 216 188 6 629 360 0 0 0 chr11 5793435 5793475 -116050381 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 629 896 209 23 45 chr11 5793475 5793666 -116050190 - B3 SINE B2 -29 187 3 6 629 885 200 72 68 chr11 5794590 5794826 -116049030 - B4 SINE B4 -10 282 46 6 629 380 348 47 9 chr11 5794851 5795063 -116048793 - LTR37A LTR ERV1 -22 404 185 6 629 395 262 10 0 chr11 5795165 5795268 -116048588 - PB1D10 SINE Alu -2 115 12 6 629 1169 102 11 0 chr11 5795450 5795627 -116048229 - B2_Mm1t SINE B2 -3 190 12 6 629 224 260 0 0 chr11 5795759 5795809 -116048047 + C-rich Low_complexity Low_complexity 1 50 0 6 629 222 224 17 17 chr11 5796207 5796266 -116047590 - ID4 SINE ID -11 72 14 6 629 404 198 94 0 chr11 5799809 5799905 -116043951 - PB1D10 SINE Alu -1 116 12 6 629 21 0 0 0 chr11 5800831 5800852 -116043004 + AT_rich Low_complexity Low_complexity 1 21 0 6 629 1635 163 66 38 chr11 5802536 5802932 -116040924 + RMER17C LTR ERVK 1 407 -3 6 629 229 369 69 21 chr11 5803811 5803843 -116040013 - B4 SINE B4 -55 237 87 6 629 503 241 18 0 chr11 5803843 5803955 -116039901 - PB1D9 SINE Alu -5 115 2 6 629 885 222 48 19 chr11 5804813 5805020 -116038836 - B3 SINE B2 -3 213 1 6 629 720 184 0 125 chr11 5805429 5805597 -116038259 + B1_Mur2 SINE Alu 1 147 -2 6 629 239 95 48 0 chr11 5805607 5805649 -116038207 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 6 629 787 58 0 0 chr11 5805704 5805808 -116038048 + B1_Mm SINE Alu 1 104 -43 6 629 441 0 0 0 chr11 5806934 5806983 -116036873 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 629 224 182 18 18 chr11 5807074 5807130 -116036726 + (CAGAG)n Simple_repeat Simple_repeat 1 56 0 6 629 764 242 22 16 chr11 5807370 5807555 -116036301 + MTE2a LTR MaLR 194 379 0 6 629 206 231 0 0 chr11 5807567 5807606 -116036250 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 629 234 0 0 0 chr11 5807615 5807641 -116036215 + (T)n Simple_repeat Simple_repeat 1 26 0 6 629 1150 62 0 0 chr11 5807641 5807787 -116036069 - B1_Mus2 SINE Alu 0 147 2 6 629 4361 112 28 24 chr11 5807788 5808529 -116035327 + RMER6A LTR ERVK 9 752 -4 6 629 606 171 0 0 chr11 5808532 5808684 -116035172 + (TG)n Simple_repeat Simple_repeat 2 153 0 6 629 319 151 0 0 chr11 5811717 5811770 -116032086 + PB1D9 SINE Alu 3 55 -65 6 629 432 0 0 0 chr11 5811784 5811832 -116032024 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 6 629 22 0 0 0 chr11 5812732 5812754 -116031102 + AT_rich Low_complexity Low_complexity 1 22 0 6 629 291 54 0 0 chr11 5813714 5813751 -116030105 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 6 629 311 65 0 21 chr11 5816199 5816246 -116027610 + (GGA)n Simple_repeat Simple_repeat 2 47 0 6 629 480 35 0 0 chr11 5816814 5816872 -116026984 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 629 607 294 87 24 chr11 5816916 5817170 -116026686 - B4A SINE B4 -22 270 1 6 629 304 284 12 0 chr11 5817355 5817436 -116026420 + B4 SINE B4 4 85 -207 6 629 916 205 79 15 chr11 5817446 5817649 -116026207 + B3 SINE B2 1 216 0 6 629 27 29 0 0 chr11 5817760 5817794 -116026062 + AT_rich Low_complexity Low_complexity 1 34 0 6 629 21 0 0 0 chr11 5817829 5817850 -116026006 + AT_rich Low_complexity Low_complexity 1 21 0 6 629 524 180 0 67 chr11 5817944 5818063 -116025793 + MTEa LTR MaLR 55 165 -194 6 629 256 203 81 0 chr11 5818089 5818163 -116025693 + RLTR19C LTR ERVK 18 97 -409 6 629 256 204 0 0 chr11 5818255 5818304 -116025552 + RLTR19C LTR ERVK 47 95 -411 6 629 319 286 89 40 chr11 5818318 5818442 -116025414 + RLTR33 LTR ERVK 469 598 -80 6 629 682 195 77 24 chr11 5818535 5818703 -116025153 + MTEa LTR MaLR 203 379 0 6 629 384 271 163 11 chr11 5819003 5819193 -116024663 + MLT1F1 LTR MaLR 345 563 -6 6 629 375 23 0 0 chr11 5819351 5819395 -116024461 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 629 451 209 33 0 chr11 5819402 5819493 -116024363 - B1_Mur2 SINE Alu -49 100 7 7 629 25 31 0 0 chr11 5819501 5819533 -116024323 + AT_rich Low_complexity Low_complexity 1 32 0 7 629 276 269 15 0 chr11 5820168 5820235 -116023621 - ID_B1 SINE B4 -48 176 109 7 629 254 345 14 7 chr11 5820449 5820589 -116023267 + G-rich Low_complexity Low_complexity 3 143 0 7 629 554 278 115 10 chr11 5820675 5820875 -116022981 + MT2A LTR ERVL 305 525 -8 7 629 328 303 70 75 chr11 5820942 5821142 -116022714 + L1MB4 LINE L1 1540 1738 -5270 7 629 822 203 116 35 chr11 5821151 5821350 -116022506 - B3 SINE B2 0 216 2 7 629 741 303 135 4 chr11 5821362 5821831 -116022025 + L1MB4 LINE L1 1853 2426 -4767 7 629 466 253 82 6 chr11 5821953 5822112 -116021744 + L1MB4 LINE L1 4870 5040 -1960 7 629 427 248 106 7 chr11 5822121 5822263 -116021593 + MLT1A0 LTR MaLR 10 165 -200 7 629 296 278 30 40 chr11 5822328 5822429 -116021427 + MLT1A0 LTR MaLR 259 358 -7 7 629 765 293 153 63 chr11 5822433 5823176 -116020680 + L1MB4 LINE L1 5056 5865 -1141 7 629 1094 69 7 0 chr11 5823257 5823401 -116020455 + B1_Mm SINE Alu 2 146 -1 7 629 205 100 20 20 chr11 5823414 5823465 -116020391 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 7 629 366 195 52 0 chr11 5823562 5823639 -116020217 - ID4 SINE ID -1 82 2 7 629 464 309 0 16 chr11 5823708 5823833 -116020023 + PB1 SINE Alu 1 123 -4 7 629 1442 275 78 75 chr11 5823888 5824815 -116019041 + L1MB4 LINE L1 6072 7002 -38 7 629 509 246 26 0 chr11 5824818 5824932 -116018924 + B3A SINE B2 5 121 -77 7 629 237 362 62 8 chr11 5825041 5825169 -116018687 + MLT1J-int LTR MaLR 442 576 -811 7 629 319 292 20 40 chr11 5825221 5825321 -116018535 + MLT1J-int LTR MaLR 745 842 -545 7 629 192 125 0 0 chr11 5826524 5826556 -116017300 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 7 629 1047 63 0 0 chr11 5827238 5827381 -116016475 + B1_Mus1 SINE Alu 6 148 0 7 629 227 298 72 58 chr11 5827256 5827395 -116016461 - YREP_Mm Unknown Unknown -1518 294 154 7 629 976 51 0 69 chr11 5827395 5827584 -116016272 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 7 629 709 129 34 8 chr11 5827677 5827794 -116016062 - B1_Mur2 SINE Alu -1 148 29 7 629 234 0 0 0 chr11 5827815 5827841 -116016015 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 629 22 0 0 0 chr11 5827890 5827912 -116015944 + AT_rich Low_complexity Low_complexity 1 22 0 7 629 13675 65 23 13 chr11 5827912 5830389 -116013467 - L1VL2 LINE L1 -627 2988 487 7 629 291 297 90 0 chr11 5830529 5830640 -116013216 + ORR1E LTR MaLR 8 128 -231 7 629 4047 50 0 32 chr11 5830992 5831528 -116012328 + MURVY-LTR LTR ERV1 1 519 0 7 629 5386 285 48 48 chr11 5831528 5833652 -116010204 + MuRRS4-int LTR ERV1 3 2268 -5288 7 629 183 42 0 0 chr11 5833652 5833676 -116010180 + (CAA)n Simple_repeat Simple_repeat 2 25 0 7 629 5023 312 60 29 chr11 5833676 5834207 -116009649 + MuRRS4-int LTR ERV1 2269 2816 -4740 7 629 3762 276 1 13 chr11 5834202 5835119 -116008737 + MuRRS4-int LTR ERV1 2146 3051 -2012 7 629 2760 54 5 134 chr11 5835119 5835565 -116008291 + RLTR10 LTR ERVK 1 388 -2 7 629 3851 46 7 19 chr11 5835577 5836469 -116007387 + RLTR10-int LTR ERVK 41 992 -995 7 629 690 338 28 28 chr11 5836494 5836917 -116006939 + RLTR10-int LTR ERVK 1172 1594 -5987 7 629 8362 29 1 5 chr11 5836998 5837999 -116005857 + RLTR10-int LTR ERVK 990 1986 -1 7 629 2399 62 2 159 chr11 5837999 5838459 -116005397 + RLTR10 LTR ERVK 1 388 -2 7 629 623 279 7 141 chr11 5838460 5838744 -116005112 + MuRRS4-int LTR ERV1 3045 3290 -1773 7 629 3259 265 3 14 chr11 5838890 5839663 -116004193 + MuRRS4-int LTR ERV1 3515 4278 -785 7 629 254 96 18 55 chr11 5839857 5839912 -116003944 + RLTR6-int LTR ERV1 7726 7778 0 7 629 299 53 0 0 chr11 5839912 5839950 -116003906 + MURVY-LTR LTR ERV1 1 38 -481 7 629 488 91 159 0 chr11 5839996 5840084 -116003772 + B1_Mur4 SINE Alu 49 150 0 7 629 324 336 95 50 chr11 5840556 5840935 -116002921 + L1ME1 LINE L1 5352 5747 -697 7 629 319 338 118 13 chr11 5840958 5841118 -116002738 + L1ME1 LINE L1 5878 6053 -126 7 629 937 119 35 0 chr11 5841118 5841261 -116002595 - B1_Mus1 SINE Alu 0 148 1 7 629 319 338 118 13 chr11 5841261 5841337 -116002519 + L1ME1 LINE L1 6054 6139 -40 7 629 377 325 0 33 chr11 5841344 5841465 -116002391 - PB1D10 SINE Alu 0 117 1 7 629 1268 196 102 36 chr11 5843360 5843693 -116000163 - ORR1E LTR MaLR -4 355 1 7 629 1035 109 20 0 chr11 5844017 5844164 -115999692 + B1_Mur4 SINE Alu 1 150 0 7 629 1082 39 26 0 chr11 5844164 5844320 -115999536 + (TG)n Simple_repeat Simple_repeat 2 161 0 7 629 615 284 28 0 chr11 5844323 5844464 -115999392 - RSINE1 SINE B4 -20 145 1 7 629 949 288 4 4 chr11 5844464 5844692 -115999164 - B4A SINE B4 -64 228 1 7 629 385 274 69 0 chr11 5845117 5845219 -115998637 - MER53 DNA hAT -83 110 2 7 629 1090 73 0 0 chr11 5845943 5846080 -115997776 + B1_Mus1 SINE Alu 5 141 -7 7 629 1057 239 107 10 chr11 5846138 5846447 -115997409 - Tigger7 DNA MER2_type -19 2472 2134 7 629 297 20 39 20 chr11 5846476 5846527 -115997329 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 7 629 1253 41 0 0 chr11 5846529 5846676 -115997180 - B1_Mus2 SINE Alu 0 147 1 7 629 379 294 65 218 chr11 5846676 5846881 -115996975 - Tigger7 DNA MER2_type -2196 295 107 7 629 745 203 109 11 chr11 5846881 5847055 -115996801 + B3A SINE B2 1 191 -7 7 629 379 294 65 218 chr11 5847055 5847188 -115996668 - Tigger7 DNA MER2_type -2385 106 9 7 629 846 282 172 14 chr11 5847335 5847760 -115996096 + MLT1D LTR MaLR 1 492 -13 7 629 247 123 17 34 chr11 5849146 5849205 -115994651 + G-rich Low_complexity Low_complexity 3 60 0 7 629 963 88 199 12 chr11 5850510 5850671 -115993185 - B2_Mm2 SINE B2 -4 191 1 7 629 317 350 86 83 chr11 5850829 5851168 -115992688 - L1M5 LINE L1 -778 5368 5029 7 629 1710 26 0 0 chr11 5851169 5851361 -115992495 - B2_Mm1a SINE B2 0 193 2 7 629 1137 275 102 24 chr11 5851363 5851814 -115992042 - Lx9 LINE L1 0 7644 7159 7 629 939 159 0 0 chr11 5851919 5852089 -115991767 + CT-rich Low_complexity Low_complexity 3 172 0 7 629 714 235 69 39 chr11 5853216 5853420 -115990436 + B3 SINE B2 5 214 -2 7 629 564 189 9 0 chr11 5853523 5853629 -115990227 - RSINE1 SINE B4 -58 107 1 7 629 1892 238 89 16 chr11 5853867 5854363 -115989493 + MT2A LTR ERVL 2 533 0 7 629 311 290 10 0 chr11 5854363 5854463 -115989393 + (TA)n Simple_repeat Simple_repeat 2 102 0 7 629 274 309 46 64 chr11 5854464 5854637 -115989219 - L1MC4 LINE L1 -153 7889 7720 7 629 459 0 0 0 chr11 5854707 5854758 -115989098 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 7 629 23 54 0 0 chr11 5855653 5855690 -115988166 + GC_rich Low_complexity Low_complexity 1 37 0 7 629 854 125 211 52 chr11 5856315 5856509 -115987347 - URR1B DNA MER1_type 0 225 1 7 629 652 291 25 7 chr11 5856821 5857087 -115986769 - L1MB3 LINE L1 -204 5970 5706 7 629 320 269 60 151 chr11 5857114 5857280 -115986576 + B4 SINE B4 6 156 -136 7 629 243 294 0 29 chr11 5858129 5858199 -115985657 - MIR SINE MIR -27 235 168 7 629 683 156 164 0 chr11 5858300 5858422 -115985434 + B1_Mur2 SINE Alu 2 143 -6 7 629 832 244 0 12 chr11 5858881 5859047 -115984809 - RSINE1 SINE B4 0 165 2 7 629 788 152 14 0 chr11 5859759 5859904 -115983952 + CT-rich Low_complexity Low_complexity 2 148 0 7 629 713 201 14 14 chr11 5861620 5861761 -115982095 - B1_Mur1 SINE Alu -1 148 8 7 629 469 307 5 43 chr11 5861621 5861808 -115982048 - ID_B1 SINE B4 0 224 45 7 629 708 115 9 0 chr11 5861897 5862010 -115981846 - B1_Mus2 SINE Alu 0 147 34 7 629 331 258 105 98 chr11 5863303 5863459 -115980397 - MER33 DNA MER1_type -35 289 132 7 629 1016 206 33 29 chr11 5863459 5863669 -115980187 - B3 SINE B2 -4 212 2 7 629 331 258 105 98 chr11 5863669 5863778 -115980078 - MER33 DNA MER1_type -193 131 22 7 629 428 343 68 38 chr11 5863801 5864181 -115979675 - MLT1C LTR MaLR 0 467 40 7 629 288 0 0 0 chr11 5864524 5864556 -115979300 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 629 1061 169 11 0 chr11 5865119 5865302 -115978554 - B3 SINE B2 -5 211 27 7 629 216 0 0 0 chr11 5865310 5865334 -115978522 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 7 629 1202 61 0 0 chr11 5865336 5865483 -115978373 - B1_Mus1 SINE Alu 0 148 2 7 629 225 154 0 0 chr11 5865485 5865524 -115978332 - B3 SINE B2 -177 39 1 7 629 228 35 0 0 chr11 5869645 5869674 -115974182 + (T)n Simple_repeat Simple_repeat 1 29 0 7 629 219 358 17 0 chr11 5873915 5874035 -115969821 + (TG)n Simple_repeat Simple_repeat 1 122 0 7 629 204 40 0 0 chr11 5874787 5874812 -115969044 + (CAA)n Simple_repeat Simple_repeat 2 26 0 7 629 211 257 22 15 chr11 5881121 5881206 -115962650 + GA-rich Low_complexity Low_complexity 1 85 0 7 629 248 231 0 19 chr11 5883675 5883728 -115960128 + GA-rich Low_complexity Low_complexity 5 56 0 7 629 814 205 178 5 chr11 5888353 5888544 -115955312 - URR1A DNA MER1_type -1 225 2 7 629 486 280 38 0 chr11 5892208 5892340 -115951516 - ID_B1 SINE B4 0 224 88 7 629 279 0 0 0 chr11 5896377 5896408 -115947448 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 629 335 262 12 12 chr11 5898004 5898089 -115945767 + (CCA)n Simple_repeat Simple_repeat 3 87 0 7 78 333 338 0 31 chr11 5898092 5898254 -115945602 + HAL1-2a_MD LINE L1 2350 2506 -518 7 630 363 292 0 64 chr11 5898273 5898430 -115945426 + HAL1-2a_MD LINE L1 2345 2491 -533 7 630 230 297 0 8 chr11 5898446 5898575 -115945281 + (CCA)n Simple_repeat Simple_repeat 1 128 0 7 630 600 189 0 48 chr11 5898570 5898759 -115945097 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 7 630 254 278 18 12 chr11 5898827 5898991 -115944865 + (CACCAT)n Simple_repeat Simple_repeat 5 169 0 7 630 552 111 0 0 chr11 5900760 5900850 -115943006 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 630 211 292 123 14 chr11 5902684 5902830 -115941026 + MIRb SINE MIR 76 237 -31 7 630 233 317 154 27 chr11 5903596 5903784 -115940072 + MER113A DNA MER1_type 49 260 -54 7 630 690 188 193 19 chr11 5904928 5905140 -115938716 + L1MB4 LINE L1 5582 5830 -350 7 630 539 171 35 71 chr11 5905140 5905308 -115938548 + B1_Mm SINE Alu 1 147 0 7 630 581 124 0 10 chr11 5905326 5905424 -115938432 + (GGA)n Simple_repeat Simple_repeat 1 97 0 7 630 357 238 80 108 chr11 5905428 5905640 -115938216 + L1MB4 LINE L1 5852 6057 -126 7 630 6103 45 9 28 chr11 5905654 5906410 -115937446 + RLTR4_Mm LTR ERV1 1 742 0 7 630 7676 28 0 11 chr11 5906410 5907346 -115936510 + RLTR4_MM-int LTR ERV1 1 926 -6675 7 630 10993 29 32 3 chr11 5907431 5908780 -115935076 + RLTR4_MM-int LTR ERV1 912 2299 -5302 7 630 13797 82 4 10 chr11 5908756 5910619 -115933237 + RLTR4_MM-int LTR ERV1 3996 5847 -1754 7 630 1178 48 0 0 chr11 5910616 5910762 -115933094 + RLTR4_MM-int LTR ERV1 7456 7601 0 7 630 6103 45 9 28 chr11 5910762 5911518 -115932338 + RLTR4_Mm LTR ERV1 1 742 0 7 630 229 344 103 8 chr11 5911674 5911800 -115932056 + ORR1E LTR MaLR 1 138 -221 7 630 817 232 104 54 chr11 5911956 5912234 -115931622 - B4A SINE B4 0 292 1 7 630 218 106 0 21 chr11 5912311 5912359 -115931497 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 630 375 23 0 0 chr11 5912359 5912403 -115931453 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 630 22 35 0 0 chr11 5912993 5913022 -115930834 + AT_rich Low_complexity Low_complexity 1 29 0 8 630 698 245 62 26 chr11 5913035 5913228 -115930628 - B3 SINE B2 -15 201 2 8 630 283 246 29 0 chr11 5913233 5913302 -115930554 + MER45A DNA Tip100 98 168 -10 8 630 758 238 7 0 chr11 5914394 5914541 -115929315 + B1_Mur1 SINE Alu 2 149 0 8 630 22 0 0 0 chr11 5916149 5916171 -115927685 + AT_rich Low_complexity Low_complexity 1 22 0 8 630 225 108 0 0 chr11 5916352 5916389 -115927467 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 630 348 24 0 0 chr11 5916407 5916448 -115927408 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 630 543 16 0 0 chr11 5916449 5916513 -115927343 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 630 21 0 0 0 chr11 5917853 5917874 -115925982 + GC_rich Low_complexity Low_complexity 1 21 0 8 630 254 283 28 102 chr11 5919981 5920158 -115923698 - MLT2B4 LTR ERVL -85 471 308 8 630 317 304 61 55 chr11 5921251 5921432 -115922424 + LTR53 LTR ERVL 2 183 -336 8 630 388 302 112 12 chr11 5921452 5921703 -115922153 + LTR53 LTR ERVL 241 516 -3 8 630 942 193 43 38 chr11 5922898 5923108 -115920748 - B3 SINE B2 0 216 6 8 630 861 120 0 0 chr11 5923148 5923281 -115920575 + (TTTC)n Simple_repeat Simple_repeat 3 135 0 8 630 1156 50 0 7 chr11 5923281 5923416 -115920440 - B1_Mus2 SINE Alu -8 139 5 8 630 188 243 75 75 chr11 5923629 5923709 -115920147 - MIR3 SINE MIR -16 192 113 8 630 308 254 100 17 chr11 5924270 5924390 -115919466 - MER53 DNA hAT -4 189 60 8 630 22 35 0 0 chr11 5925677 5925706 -115918150 + AT_rich Low_complexity Low_complexity 1 29 0 8 630 629 47 0 12 chr11 5928053 5928139 -115915717 + (GGA)n Simple_repeat Simple_repeat 1 85 0 8 630 191 103 26 0 chr11 5929742 5929781 -115914075 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 8 630 229 111 0 0 chr11 5929781 5929817 -115914039 + B1_Mm SINE Alu 109 144 -3 8 630 243 152 0 0 chr11 5929819 5929865 -115913991 + A-rich Low_complexity Low_complexity 1 46 0 8 630 308 284 17 25 chr11 5931730 5931849 -115912007 - Lx8 LINE L1 -2 7471 7354 8 630 253 276 33 44 chr11 5933454 5933545 -115910311 + ETnERV2-int LTR ERVK 4626 4715 -2691 8 630 334 294 9 0 chr11 5934704 5934813 -115909043 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 8 630 304 298 125 0 chr11 5934817 5934921 -115908935 - PB1 SINE Alu -8 119 3 8 630 912 170 14 0 chr11 5936172 5936319 -115907537 - B1_Mur3 SINE Alu 0 149 1 8 630 261 0 0 0 chr11 5936406 5936435 -115907421 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 630 357 254 66 70 chr11 5938373 5938529 -115905327 + L1MC1 LINE L1 253 387 -6364 8 630 1368 288 167 14 chr11 5938611 5939276 -115904580 + L1MC1 LINE L1 582 1348 -5403 8 630 209 33 0 32 chr11 5939368 5939399 -115904457 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 8 630 371 250 85 15 chr11 5939490 5939620 -115904236 - L1MCa LINE L1 -4207 2301 2163 8 630 435 252 122 17 chr11 5939693 5939923 -115903933 - L1MCa LINE L1 -4619 1889 1636 8 630 382 256 102 77 chr11 5940002 5940315 -115903541 + L1MC1 LINE L1 2281 2601 -4150 8 630 750 171 43 0 chr11 5940322 5940462 -115903394 + B1_Mur4 SINE Alu 5 150 0 8 630 370 222 26 0 chr11 5940484 5940601 -115903255 + L1MC1 LINE L1 2586 2705 -3859 8 630 1283 278 114 19 chr11 5940600 5941124 -115902732 + L1MB3 LINE L1 4552 5125 -1015 8 630 329 291 78 37 chr11 5941239 5941320 -115902536 + L1MB3 LINE L1 5176 5257 -889 8 630 234 0 0 0 chr11 5941320 5941346 -115902510 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 8 630 1207 68 0 7 chr11 5941355 5941503 -115902353 - B1_Mus1 SINE Alu -1 147 1 8 630 928 317 107 41 chr11 5941503 5942253 -115901603 + L1MB3 LINE L1 5264 6058 -125 8 630 458 322 111 4 chr11 5942688 5942931 -115900925 + L1MC1 LINE L1 2724 2992 -3572 8 630 621 38 0 0 chr11 5942990 5943070 -115900786 + (CA)n Simple_repeat Simple_repeat 2 81 0 8 630 495 0 0 0 chr11 5943236 5943291 -115900565 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 630 1581 258 115 55 chr11 5943327 5943805 -115900051 + L1MC1 LINE L1 2967 3506 -3058 8 630 1023 211 14 54 chr11 5943805 5944026 -115899830 + B3 SINE B2 5 216 0 8 630 1477 258 115 55 chr11 5944026 5944366 -115899490 + L1MC1 LINE L1 3507 3834 -2730 8 630 353 297 0 11 chr11 5944377 5944469 -115899387 + PB1D10 SINE Alu 9 99 -18 8 630 320 322 9 0 chr11 5944487 5944602 -115899254 + L1MC1 LINE L1 3870 3985 -2579 8 630 791 179 7 22 chr11 5944622 5944759 -115899097 + B1_Mur1 SINE Alu 13 147 -2 8 630 249 284 92 0 chr11 5944894 5945003 -115898853 + L1MC1 LINE L1 4216 4334 -2230 8 630 188 34 0 33 chr11 5945013 5945043 -115898813 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 630 1204 35 21 0 chr11 5945049 5945193 -115898663 + B1_Mus2 SINE Alu 1 147 0 8 630 475 209 0 10 chr11 5945233 5945326 -115898530 - B1_Mur4 SINE Alu -50 99 13 8 630 369 266 53 11 chr11 5945247 5945342 -115898514 - B4 SINE B4 -112 180 82 8 630 888 311 122 13 chr11 5945378 5946066 -115897790 + L1MC1 LINE L1 4374 5136 -1428 8 630 783 138 0 0 chr11 5946180 5946289 -115897567 - B1_Mur1 SINE Alu -30 119 11 8 630 828 282 96 78 chr11 5946315 5947524 -115896332 + L1MC1 LINE L1 5380 6588 -174 8 630 725 275 43 19 chr11 5947524 5947735 -115896121 + B3 SINE B2 1 216 0 8 630 818 228 88 14 chr11 5948217 5948542 -115895314 + MTEa LTR MaLR 1 379 0 8 630 216 0 0 0 chr11 5948632 5948656 -115895200 + (CAA)n Simple_repeat Simple_repeat 1 24 0 8 630 318 216 72 0 chr11 5948697 5948767 -115895089 + PB1D10 SINE Alu 40 125 -2 8 630 634 229 0 0 chr11 5949292 5949414 -115894442 + (GCCTAA)n Simple_repeat Simple_repeat 3 124 0 8 630 522 46 0 0 chr11 5949852 5949917 -115893939 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 630 302 341 164 14 chr11 5951662 5952010 -115891846 + L1MB7 LINE L1 5623 6022 -162 8 630 1147 144 107 0 chr11 5952167 5952354 -115891502 + B3 SINE B2 5 211 -5 8 630 260 226 19 0 chr11 5952372 5952425 -115891431 - tRNA-Ala-GCA tRNA tRNA -21 54 1 8 630 258 270 144 7 chr11 5953793 5953946 -115889910 - L1MB7 LINE L1 -20 6164 5991 8 630 774 260 141 49 chr11 5954045 5954308 -115889548 - B4 SINE B4 -4 288 2 8 630 688 277 73 4 chr11 5954309 5954581 -115889275 - L1MB7 LINE L1 -815 5331 5041 8 630 317 226 158 21 chr11 5954648 5954743 -115889113 - PB1D10 SINE Alu -1 116 9 8 630 300 171 86 62 chr11 5954747 5954828 -115889028 - L1MB7 LINE L1 -1215 4931 4849 8 630 239 308 25 13 chr11 5954830 5954909 -115888947 + ID4_ SINE ID 2 81 -2 8 630 299 287 137 6 chr11 5954942 5955124 -115888732 - L1MB7 LINE L1 -1313 4833 4628 8 630 549 245 7 52 chr11 5955159 5955170 -115888686 + ID_B1 SINE B4 73 215 -9 8 630 900 159 7 0 chr11 5955170 5955308 -115888548 + B1_Mur2 SINE Alu 2 140 -9 8 630 195 129 0 0 chr11 5955308 5955339 -115888517 + (CAG)n Simple_repeat Simple_repeat 2 32 0 8 630 258 320 39 0 chr11 5955742 5955870 -115887986 - L1MB7 LINE L1 -1594 4552 4420 8 630 639 236 260 53 chr11 5955928 5956356 -115887500 - L1MB7 LINE L1 -1708 4438 3922 8 630 390 318 127 43 chr11 5956366 5956688 -115887168 + ORR1D2 LTR MaLR 7 377 -2 8 630 846 262 55 44 chr11 5956690 5956961 -115886895 + B4A SINE B4 2 275 -17 8 630 456 264 17 0 chr11 5957001 5957175 -115886681 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 630 484 291 104 14 chr11 5957192 5957471 -115886385 - L1MB7 LINE L1 -2221 3925 3622 8 630 599 233 89 5 chr11 5957508 5957711 -115886145 - L1MB7 LINE L1 -2684 3462 3243 8 630 293 321 133 7 chr11 5958053 5958188 -115885668 + L2a LINE L2 3274 3425 -1 8 630 459 273 121 6 chr11 5958299 5958465 -115885391 + MER33 DNA MER1_type 49 233 -91 8 630 1411 162 0 0 chr11 5958532 5958754 -115885102 + URR1B DNA MER1_type 1 222 -3 8 630 438 223 214 0 chr11 5959825 5959937 -115883919 + ID_B1 SINE B4 84 219 -5 8 630 252 289 57 92 chr11 5959937 5959965 -115883891 + B1_Mur3 SINE Alu 3 137 -12 8 630 279 241 124 22 chr11 5960624 5960713 -115883143 + B4A SINE B4 189 286 -6 8 630 22 70 0 0 chr11 5965377 5965420 -115878436 + GC_rich Low_complexity Low_complexity 1 43 0 8 630 29 47 0 0 chr11 5965655 5965698 -115878158 + GC_rich Low_complexity Low_complexity 1 43 0 8 630 201 290 12 31 chr11 5965772 5965932 -115877924 + C-rich Low_complexity Low_complexity 3 159 0 8 630 999 217 80 91 chr11 5967468 5967732 -115876124 + B4A SINE B4 32 292 0 8 630 255 319 17 8 chr11 5967815 5967836 -115876020 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 630 779 118 109 15 chr11 5967836 5967973 -115875883 + B1_Mur4 SINE Alu 1 150 0 8 630 255 319 17 8 chr11 5967973 5968071 -115875785 + (CA)n Simple_repeat Simple_repeat 2 101 0 8 630 187 140 0 39 chr11 5968576 5968628 -115875228 + C-rich Low_complexity Low_complexity 3 52 0 8 630 317 294 12 0 chr11 5969025 5969110 -115874746 + (TGG)n Simple_repeat Simple_repeat 2 87 0 8 630 295 356 43 24 chr11 5969368 5969532 -115874324 + Tigger7 DNA MER2_type 1 167 -2324 8 630 432 0 0 0 chr11 5969639 5969687 -115874169 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 630 255 351 55 44 chr11 5969754 5969936 -115873920 - L2b LINE L2 -203 3172 2989 8 630 461 119 40 0 chr11 5970673 5970774 -115873082 + (CTGGGG)n Simple_repeat Simple_repeat 4 108 0 8 630 240 331 6 23 chr11 5970974 5971147 -115872709 + GA-rich Low_complexity Low_complexity 2 171 0 8 630 270 310 8 29 chr11 5971260 5971763 -115872093 + GA-rich Low_complexity Low_complexity 1 492 0 8 630 217 230 73 24 chr11 5971738 5971966 -115871890 + (CAGGA)n Simple_repeat Simple_repeat 1 239 0 8 630 250 333 0 27 chr11 5971974 5972159 -115871697 + GA-rich Low_complexity Low_complexity 1 180 0 8 630 403 301 30 71 chr11 5972264 5972461 -115871395 + L1M5 LINE L1 5559 5747 -697 8 630 850 82 0 0 chr11 5972899 5973009 -115870847 - B1_Mus1 SINE Alu -37 111 2 8 630 458 254 43 78 chr11 5973009 5973043 -115870813 - B4 SINE B4 -201 91 63 8 630 843 64 0 0 chr11 5973150 5973260 -115870596 + (GAAA)n Simple_repeat Simple_repeat 1 110 0 8 630 646 78 115 57 chr11 5973463 5973585 -115870271 + B1_Mur4 SINE Alu 22 150 0 8 630 225 0 0 0 chr11 5973620 5973645 -115870211 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 8 630 1240 73 6 6 chr11 5973645 5973823 -115870033 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 8 630 186 171 0 0 chr11 5973824 5973865 -115869991 + GA-rich Low_complexity Low_complexity 2 42 0 8 630 1361 76 21 5 chr11 5973942 5974128 -115869728 + B2_Mm2 SINE B2 1 189 -6 8 630 363 269 63 57 chr11 5974140 5974298 -115869558 + MER2 DNA MER2_type 87 245 -100 8 630 765 252 35 97 chr11 5974271 5974349 -115869507 + B4 SINE B4 8 80 -212 8 630 234 0 0 0 chr11 5974349 5974375 -115869481 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 630 765 252 35 97 chr11 5974375 5974524 -115869332 + B4 SINE B4 81 221 -71 8 630 1020 112 0 14 chr11 5974384 5974529 -115869327 + B1_Mus1 SINE Alu 6 148 0 8 630 268 281 118 89 chr11 5974551 5974754 -115869102 + B4A SINE B4 84 292 0 8 630 575 267 7 0 chr11 5974776 5974911 -115868945 + MER2 DNA MER2_type 210 345 0 8 630 310 288 80 9 chr11 5975114 5975226 -115868630 + B2_Mm1a SINE B2 2 121 -72 9 630 327 211 0 0 chr11 5975226 5975316 -115868540 + CT-rich Low_complexity Low_complexity 2 91 0 9 630 459 0 0 0 chr11 5975316 5975367 -115868489 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 630 233 260 38 38 chr11 5975682 5975762 -115868094 + L1M5 LINE L1 5683 5762 -682 9 630 255 283 95 32 chr11 5976327 5976422 -115867434 - PB1 SINE Alu -4 123 23 9 630 848 264 72 39 chr11 5977164 5977520 -115866336 - MTD LTR MaLR 0 396 8 9 630 378 303 20 0 chr11 5978573 5978672 -115865184 + Tigger7 DNA MER2_type 2391 2491 0 8 630 386 178 141 10 chr11 5978702 5978812 -115865044 - L1MEg LINE L1 -2057 4089 3967 9 630 806 308 103 15 chr11 5978811 5979220 -115864636 - L1MEg LINE L1 -3356 2790 2346 9 630 811 258 167 0 chr11 5979426 5979725 -115864131 + MLT1B LTR MaLR 40 388 -2 9 630 334 325 61 37 chr11 5979815 5979978 -115863878 - L1MEg LINE L1 -3869 2277 2111 9 630 236 146 109 0 chr11 5980258 5980313 -115863543 - L1MEg LINE L1 -4714 1528 1468 9 630 417 306 148 16 chr11 5980365 5980554 -115863302 - L1MEg LINE L1 -4928 1314 1101 9 630 2182 262 40 40 chr11 5980556 5981323 -115862533 - RMER1C Other Other -1 1341 575 9 630 342 287 45 18 chr11 5981332 5981442 -115862414 - L1MEg LINE L1 -5081 1161 1049 9 630 222 72 52 35 chr11 5982002 5982060 -115861796 + (TCTCTG)n Simple_repeat Simple_repeat 4 62 0 9 630 226 169 39 78 chr11 5982095 5982172 -115861684 - Lx9 LINE L1 -30 7614 7541 9 630 711 230 110 0 chr11 5982185 5982385 -115861471 - Lx9 LINE L1 -167 7477 7256 9 630 431 257 115 0 chr11 5982591 5982704 -115861152 - B3 SINE B2 -11 205 80 9 630 213 39 0 0 chr11 5982706 5982732 -115861124 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 630 720 97 0 0 chr11 5982732 5982855 -115861001 + (GA)n Simple_repeat Simple_repeat 1 124 0 9 630 576 162 105 0 chr11 5982855 5982960 -115860896 - B1_Mur2 SINE Alu -16 133 18 9 630 859 216 102 5 chr11 5982987 5983173 -115860683 - B3 SINE B2 -12 204 1 9 630 276 373 39 19 chr11 5983251 5983407 -115860449 - MIRb SINE MIR -17 251 93 9 630 311 253 83 10 chr11 5983446 5983542 -115860314 - PB1D7 SINE Alu 0 120 18 9 630 1202 106 0 4 chr11 5983881 5984122 -115859734 + (TCC)n Simple_repeat Simple_repeat 1 239 0 9 630 814 246 38 5 chr11 5984135 5984319 -115859537 - ID_B1 SINE B4 -34 190 1 9 630 681 298 69 6 chr11 5984323 5984640 -115859216 - L1M4 LINE L1 -361 5819 5483 9 630 499 280 139 64 chr11 5984657 5984714 -115859142 - L1M4 LINE L1 -816 5330 5267 9 630 922 144 22 0 chr11 5984714 5984853 -115859003 - B1_Mus2 SINE Alu -5 142 1 9 630 499 280 139 64 chr11 5984853 5985154 -115858702 - L1M4 LINE L1 -880 5266 4945 9 630 620 262 57 18 chr11 5985160 5985389 -115858467 + L1MB7 LINE L1 5940 6177 -7 9 630 520 332 47 14 chr11 5988271 5988546 -115855310 + L1MDb LINE L1 996 1279 -5261 9 630 661 213 56 7 chr11 5988580 5988722 -115855134 - B1_Mur2 SINE Alu 0 149 1 9 630 357 296 51 87 chr11 5988730 5988772 -115855084 - B2_Mm1t SINE B2 -4 189 155 9 630 231 88 0 0 chr11 5988772 5988806 -115855050 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 630 683 226 131 1 chr11 5988806 5988959 -115854897 - B3A SINE B2 -27 171 1 9 630 2625 51 0 0 chr11 5988983 5989297 -115854559 - L1_Mus1 LINE L1 0 6567 6254 9 630 4350 53 3 2 chr11 5989304 5989868 -115853988 + L1_Mus1 LINE L1 5610 6174 -393 9 630 373 333 142 35 chr11 5990002 5990565 -115853291 + L1MDb LINE L1 1430 2047 -4586 9 630 624 288 15 25 chr11 5990565 5990761 -115853095 + B3A SINE B2 1 194 -4 9 630 373 333 142 35 chr11 5990761 5991036 -115852820 + L1MDb LINE L1 2048 2358 -4275 9 630 604 286 56 0 chr11 5991043 5991204 -115852652 + B3A SINE B2 28 197 -1 9 630 305 123 62 0 chr11 5991221 5991286 -115852570 - Lx3A LINE L1 -7 6974 6906 9 630 303 122 0 0 chr11 5991306 5991355 -115852501 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 630 215 267 11 32 chr11 5991520 5991588 -115852268 + GA-rich Low_complexity Low_complexity 3 68 0 9 630 1229 61 0 0 chr11 5991588 5991735 -115852121 + B1_Mus2 SINE Alu 1 147 0 9 630 215 267 11 32 chr11 5991735 5991759 -115852097 + polypurine Low_complexity Low_complexity 69 92 0 9 630 686 171 81 87 chr11 5991806 5991979 -115851877 + B2_Mm2 SINE B2 15 186 -9 9 630 551 116 0 35 chr11 5991991 5992107 -115851749 + (TA)n Simple_repeat Simple_repeat 2 113 0 9 630 546 86 0 0 chr11 5992221 5992302 -115851554 + ORR1A1 LTR MaLR 1 81 -265 9 630 488 104 0 0 chr11 5992297 5992364 -115851492 + ORR1A1 LTR MaLR 260 326 0 9 630 423 277 30 48 chr11 5992710 5992877 -115850979 + RNLTR23 LTR ERVK 479 642 0 9 630 410 187 7 25 chr11 5993085 5993173 -115850683 + MT2A LTR ERVL 227 296 -237 9 630 295 320 17 19 chr11 5993450 5993570 -115850286 - PB1 SINE Alu -93 218 21 9 630 715 184 28 56 chr11 5993866 5994010 -115849846 - B1_Mur2 SINE Alu 0 149 10 9 630 644 276 26 26 chr11 5994179 5994335 -115849521 - RSINE1 SINE B4 0 165 10 9 630 705 244 118 20 chr11 5994346 5994643 -115849213 + L1MD LINE L1 4864 5189 -957 9 630 545 256 65 13 chr11 5994663 5994817 -115849039 + MER21B LTR ERV1 1 162 -701 9 630 1142 275 149 5 chr11 5994872 5995248 -115848608 + MER21B LTR ERV1 318 747 -116 9 630 335 255 113 90 chr11 5995327 5995425 -115848431 + L1MD LINE L1 5218 5310 -836 9 630 729 45 250 52 chr11 5995425 5995541 -115848315 + B1_Mus1 SINE Alu 1 139 -9 9 630 182 62 0 30 chr11 5995541 5995574 -115848282 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 9 630 335 255 113 90 chr11 5995574 5995651 -115848205 + L1MD LINE L1 5311 5397 -749 9 630 417 220 89 27 chr11 5995727 5995825 -115848031 + PB1D9 SINE Alu 2 109 -11 9 630 243 0 0 0 chr11 5995825 5995852 -115848004 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 630 417 220 89 27 chr11 5995852 5995865 -115847991 + PB1D9 SINE Alu 110 120 0 9 630 281 239 76 0 chr11 5995883 5995975 -115847881 - MLT1D LTR MaLR 0 505 407 9 630 840 255 13 26 chr11 5996209 5996472 -115847384 + L1MD LINE L1 5486 5742 -2253 9 630 855 241 0 57 chr11 5996738 5996914 -115846942 - B3 SINE B2 -24 192 27 9 630 288 0 0 0 chr11 5996914 5996946 -115846910 + (T)n Simple_repeat Simple_repeat 1 32 0 9 630 1255 55 0 0 chr11 5996946 5997092 -115846764 - B1_Mm SINE Alu 0 147 2 9 630 257 175 0 0 chr11 5997092 5997132 -115846724 - B3 SINE B2 -174 42 3 9 630 869 273 24 40 chr11 5997132 5997369 -115846487 - B4A SINE B4 -59 233 1 9 630 724 197 31 0 chr11 5997585 5997712 -115846144 - B1_Mur1 SINE Alu -17 132 2 9 630 551 228 125 8 chr11 5997826 5997954 -115845902 + B1_Mur4 SINE Alu 4 146 -4 9 630 22 35 0 0 chr11 5998556 5998585 -115845271 + AT_rich Low_complexity Low_complexity 1 29 0 9 630 386 214 95 0 chr11 5998644 5998728 -115845128 + RSINE1 SINE B4 2 93 -72 9 630 431 274 53 69 chr11 6000021 6000055 -115843801 + CYRA11_Mm Unknown Y-chromosome 138 168 -449 1 630 843 172 24 41 chr11 6000055 6000225 -115843631 - URR1A DNA MER1_type 0 226 60 2 630 297 221 0 0 chr11 6001512 6001580 -115842276 + G-rich Low_complexity Low_complexity 3 70 0 3 630 728 275 80 25 chr11 6002367 6002606 -115841250 - B4A SINE B4 -40 252 1 4 630 231 209 236 79 chr11 6004182 6004226 -115839630 + MT2B LTR ERVL 96 161 -440 5 630 596 157 81 24 chr11 6004226 6004350 -115839506 + B1_Mur4 SINE Alu 1 131 -19 6 630 691 221 0 14 chr11 6004357 6004495 -115839361 + B1_Mur4 SINE Alu 2 137 -13 7 630 180 0 0 0 chr11 6004498 6004518 -115839338 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 630 1846 202 76 16 chr11 6005367 6005750 -115838106 + MTC LTR MaLR 8 413 -8 9 630 234 0 0 0 chr11 6007715 6007741 -115836115 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 630 549 0 0 0 chr11 6009110 6009171 -115834685 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 1 630 1457 65 16 5 chr11 6014626 6014813 -115829043 - B2_Mm2 SINE B2 -6 189 1 1 630 795 267 72 0 chr11 6014870 6015065 -115828791 + B3 SINE B2 1 209 -7 1 630 292 243 364 29 chr11 6016120 6016274 -115827582 - B4A SINE B4 -3 289 84 1 630 267 104 0 0 chr11 6016290 6016338 -115827518 + (CCAA)n Simple_repeat Simple_repeat 2 49 0 1 630 234 241 0 18 chr11 6016354 6016409 -115827447 - B4 SINE B4 -237 55 2 1 630 320 223 22 84 chr11 6016436 6016537 -115827319 - B1_Mm SINE Alu -55 92 1 1 630 1232 257 158 46 chr11 6016734 6017431 -115826425 - L1MB5 LINE L1 -14 6160 5387 1 630 278 215 152 45 chr11 6018516 6018628 -115825228 - L1P5 LINE L1 -720 5469 5346 1 630 524 257 155 12 chr11 6021141 6021335 -115822521 - MLT1D LTR MaLR -50 455 156 1 630 254 319 131 28 chr11 6021334 6021479 -115822377 - MLT1D LTR MaLR -292 213 54 1 630 227 31 31 0 chr11 6021986 6022018 -115821838 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 630 602 283 0 81 chr11 6022712 6022885 -115820971 - RSINE1 SINE B4 -4 161 3 2 630 201 154 0 0 chr11 6022887 6022926 -115820930 + T-rich Low_complexity Low_complexity 1 39 0 2 630 855 270 102 52 chr11 6023775 6024139 -115819717 - MLT2B5 LTR ERVL -208 509 128 2 630 3346 38 5 5 chr11 6025672 6026068 -115817788 - MTA_Mm LTR MaLR 0 396 1 2 630 753 226 14 0 chr11 6026552 6026698 -115817158 - B1F2 SINE Alu 0 149 2 2 630 191 57 86 0 chr11 6026871 6026906 -115816950 + (CCCTAA)n Simple_repeat Simple_repeat 5 42 0 2 630 954 102 22 7 chr11 6026974 6027112 -115816744 + B1_Mus1 SINE Alu 1 140 -8 2 630 677 321 21 5 chr11 6027139 6027327 -115816529 - B3A SINE B2 -2 196 6 2 630 1265 232 10 56 chr11 6027655 6027961 -115815895 - B4 SINE B4 0 292 1 2 630 716 221 47 65 chr11 6028027 6028196 -115815660 + B3 SINE B2 50 215 -1 3 78 1363 101 0 0 chr11 6029256 6029444 -115814412 + B2_Mm1a SINE B2 6 193 0 3 631 1173 109 6 0 chr11 6029601 6029766 -115814090 + B2_Mm1t SINE B2 2 167 -26 3 631 347 120 8 34 chr11 6029844 6029910 -115813946 + B2_Mm2 SINE B2 47 114 -102 3 631 21 36 0 0 chr11 6029919 6029947 -115813909 + AT_rich Low_complexity Low_complexity 1 28 0 3 631 340 255 63 9 chr11 6030313 6030424 -115813432 + RSINE1 SINE B4 35 151 -14 3 631 591 155 0 0 chr11 6030425 6030528 -115813328 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 3 631 243 0 0 0 chr11 6030641 6030668 -115813188 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3 631 237 270 16 16 chr11 6031340 6031404 -115812452 + L1M4 LINE L1 913 976 -5928 3 631 579 270 42 26 chr11 6031435 6031625 -115812231 + L1M4 LINE L1 1172 1364 -5540 3 631 552 206 59 0 chr11 6031684 6031786 -115812070 - B1_Mur4 SINE Alu -41 109 2 3 631 443 243 230 51 chr11 6031846 6032024 -115811832 - B3 SINE B2 -6 210 1 4 631 387 274 62 47 chr11 6032064 6032275 -115811581 + L1M4 LINE L1 1444 1657 -5247 3 631 1230 94 72 0 chr11 6032322 6032481 -115811375 + B2_Mm1a SINE B2 1 160 -33 4 631 183 80 0 0 chr11 6032481 6032506 -115811350 + (TAAG)n Simple_repeat Simple_repeat 3 27 0 4 631 1230 94 72 0 chr11 6032506 6032526 -115811330 + B2_Mm1a SINE B2 161 191 -2 4 631 357 318 43 70 chr11 6032555 6032741 -115811115 + B3 SINE B2 11 191 -25 4 631 468 200 146 6 chr11 6032864 6033035 -115810821 + L1M4 LINE L1 1857 2051 -5283 3 631 505 259 109 29 chr11 6033647 6033822 -115810034 + RMER15 LTR ERVL 336 524 -51 4 631 238 323 90 10 chr11 6033791 6033891 -115809965 + B3A SINE B2 89 196 -2 3 631 589 284 64 21 chr11 6033891 6034078 -115809778 - B3A SINE B2 -2 196 2 4 631 256 214 38 114 chr11 6034166 6034245 -115809611 + MT2B LTR ERVL 164 236 -365 4 631 470 229 72 10 chr11 6034176 6034295 -115809561 + PB1D9 SINE Alu 13 127 -22 4 631 819 203 7 7 chr11 6034452 6034601 -115809255 - B1_Mur3 SINE Alu 0 149 1 4 631 26 0 0 0 chr11 6034603 6034629 -115809227 + AT_rich Low_complexity Low_complexity 1 26 0 4 631 1969 249 126 65 chr11 6034728 6035563 -115808293 + Tigger7 DNA MER2_type 519 1403 -1088 5 631 639 223 59 11 chr11 6035587 6035773 -115808083 + Tigger7 DNA MER2_type 2259 2453 -38 5 631 342 0 0 0 chr11 6035786 6035824 -115808032 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 631 461 154 10 81 chr11 6036823 6036922 -115806934 - PB1D9 SINE Alu 0 120 29 5 631 23 0 0 0 chr11 6038461 6038484 -115805372 + GC_rich Low_complexity Low_complexity 1 23 0 5 631 336 281 68 31 chr11 6038522 6038713 -115805143 - L1M2 LINE L1 -679 5624 5427 5 631 406 257 48 0 chr11 6038714 6038819 -115805037 - PB1D9 SINE Alu 0 120 11 5 631 704 282 103 30 chr11 6038821 6039237 -115804619 - L1M2 LINE L1 -472 5408 4996 5 631 494 303 40 47 chr11 6039917 6040046 -115803810 + B3A SINE B2 40 169 -47 5 631 2081 154 85 8 chr11 6040046 6040412 -115803444 + ORR1B1 LTR MaLR 1 394 0 5 631 494 308 40 47 chr11 6040412 6040455 -115803401 + B3A SINE B2 168 211 -5 5 631 866 266 60 15 chr11 6040473 6040740 -115803116 - B4A SINE B4 -12 280 2 5 631 676 176 94 29 chr11 6041154 6041324 -115802532 - B2_Mm2 SINE B2 -14 181 1 5 631 2097 114 12 12 chr11 6041514 6041851 -115802005 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 631 56382 28 6 4 chr11 6041853 6048286 -115795570 - IAPEz-int LTR ERVK -2 6479 34 6 631 2097 114 12 12 chr11 6048296 6048633 -115795223 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 631 392 293 84 84 chr11 6048898 6049077 -115794779 - B4A SINE B4 0 292 114 6 631 1049 84 0 7 chr11 6049828 6049971 -115793885 + B1_Mm SINE Alu 6 147 0 6 631 1088 70 0 0 chr11 6050032 6050175 -115793681 + B1_Mus1 SINE Alu 6 148 0 6 631 217 27 53 26 chr11 6050942 6050980 -115792876 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 631 3418 33 5 2 chr11 6051186 6051581 -115792275 - MTA_Mm LTR MaLR 0 396 1 6 631 908 152 200 17 chr11 6051994 6052174 -115791682 + B3 SINE B2 1 213 -3 6 631 1436 68 10 5 chr11 6052203 6052395 -115791461 + B2_Mm1a SINE B2 1 193 0 6 631 321 234 115 79 chr11 6052540 6052679 -115791177 + MLT1B LTR MaLR 104 247 -220 6 631 467 240 149 0 chr11 6053637 6053758 -115790098 + B3 SINE B2 75 213 -3 7 631 685 270 153 34 chr11 6055310 6055636 -115788220 + MLT1A0 LTR MaLR 1 365 0 7 631 677 225 106 0 chr11 6056074 6056234 -115787622 + B3 SINE B2 38 214 -2 7 631 201 74 0 0 chr11 6056385 6056412 -115787444 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 7 631 318 50 0 0 chr11 6057557 6057597 -115786259 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 7 631 272 178 27 14 chr11 6057967 6058041 -115785815 + (TATAA)n Simple_repeat Simple_repeat 3 77 0 7 631 24 0 0 0 chr11 6058418 6058442 -115785414 + AT_rich Low_complexity Low_complexity 1 24 0 7 631 349 238 6 58 chr11 6058757 6058886 -115784970 + RSINE1 SINE B4 5 126 -39 7 631 671 188 58 29 chr11 6058945 6059082 -115784774 + B3 SINE B2 1 141 -75 7 631 254 196 18 0 chr11 6059176 6059232 -115784624 + B3 SINE B2 151 207 -9 7 631 255 321 41 12 chr11 6060341 6060451 -115783405 + MIR SINE MIR 45 161 -107 7 631 543 175 51 34 chr11 6061209 6061327 -115782529 + B1_Mur4 SINE Alu 1 120 -30 8 631 742 296 112 6 chr11 6061929 6062269 -115781587 + MLT1A1 LTR MaLR 1 376 -32 8 631 3028 44 24 62 chr11 6062363 6062562 -115781294 + MTB LTR MaLR 1 196 -204 8 631 1131 74 0 13 chr11 6062562 6062712 -115781144 + B1_Mus1 SINE Alu 1 148 0 8 631 3028 44 24 62 chr11 6062712 6062928 -115780928 + MTB LTR MaLR 197 400 0 8 631 303 269 0 0 chr11 6064024 6064091 -115779765 + B4A SINE B4 3 69 -223 8 631 519 17 0 0 chr11 6064177 6064237 -115779619 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 631 22 0 0 0 chr11 6064688 6064710 -115779146 + AT_rich Low_complexity Low_complexity 1 22 0 8 631 1067 171 0 15 chr11 6064813 6065015 -115778841 + B3 SINE B2 14 212 -4 8 631 566 248 121 22 chr11 6065132 6065441 -115778415 + L1MC LINE L1 5186 5534 -645 8 631 311 307 98 81 chr11 6065627 6065861 -115777995 - ORR1E LTR MaLR -43 316 79 8 631 226 310 0 99 chr11 6065899 6066010 -115777846 - ORR1E LTR MaLR -279 100 1 8 631 3728 143 131 3 chr11 6066124 6066826 -115777030 + RMER13B LTR ERVK 117 908 0 9 631 537 243 145 27 chr11 6066839 6067025 -115776831 + B3 SINE B2 9 216 0 9 631 474 65 0 0 chr11 6067174 6067236 -115776620 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 631 743 44 293 17 chr11 6067280 6067396 -115776460 + B1_Mus1 SINE Alu 1 148 0 9 631 442 234 87 24 chr11 6067420 6067547 -115776309 + ID_B1 SINE B4 12 146 -78 9 631 497 237 98 8 chr11 6067547 6067679 -115776177 + ID_B1 SINE B4 73 216 -8 9 631 746 264 178 8 chr11 6067762 6068128 -115775728 + L1MB2 LINE L1 5707 6134 -37 9 631 578 233 139 22 chr11 6068128 6068308 -115775548 - B3 SINE B2 -14 202 2 9 631 231 254 18 0 chr11 6068373 6068428 -115775428 - B1F SINE Alu -92 57 2 9 631 405 287 39 8 chr11 6068634 6068764 -115775092 + ID_B1 SINE B4 87 220 -4 9 631 1071 96 7 7 chr11 6069951 6070098 -115773758 + B1_Mus1 SINE Alu 2 148 0 1 631 236 177 32 0 chr11 6070489 6070551 -115773305 + (CATG)n Simple_repeat Simple_repeat 1 64 0 1 631 25 0 0 0 chr11 6070562 6070587 -115773269 + AT_rich Low_complexity Low_complexity 1 25 0 1 631 793 200 16 76 chr11 6070589 6070773 -115773083 + B3A SINE B2 11 183 -15 1 631 231 259 118 62 chr11 6070812 6070956 -115772900 + RSINE1 SINE B4 2 153 -12 1 631 537 183 0 0 chr11 6071639 6071743 -115772113 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 631 1320 91 11 0 chr11 6071765 6071941 -115771915 + B2_Mm1t SINE B2 2 179 -14 1 631 333 146 0 0 chr11 6071992 6072047 -115771809 + B2_Mm2 SINE B2 47 101 -94 1 631 351 0 0 0 chr11 6072071 6072110 -115771746 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 631 998 193 48 2 chr11 6073078 6073272 -115770584 - B3 SINE B2 -4 212 9 1 631 1222 55 0 0 chr11 6073401 6073547 -115770309 + B1_Mm SINE Alu 2 147 0 1 631 734 170 23 6 chr11 6074219 6074399 -115769457 + B3 SINE B2 3 190 -3 1 631 672 138 8 27 chr11 6074401 6074555 -115769301 + RMER17B LTR ERVK 316 498 -391 1 631 396 0 0 0 chr11 6074555 6074599 -115769257 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 631 324 288 41 29 chr11 6074599 6074621 -115769235 + RMER17B LTR ERVK 499 519 -370 1 631 291 302 8 25 chr11 6075462 6075581 -115768275 + PB1D10 SINE Alu 1 117 0 1 631 373 149 67 13 chr11 6076757 6076832 -115767024 - B1_Mus1 SINE Alu -36 112 34 1 631 300 310 40 134 chr11 6076865 6077014 -115766842 - ID_B1 SINE B4 -8 216 82 1 631 244 311 139 22 chr11 6077106 6077336 -115766520 + L1MC LINE L1 5511 5767 -2115 1 631 614 141 116 8 chr11 6077600 6077729 -115766127 + Lx4A LINE L1 6916 7058 0 1 631 194 0 39 0 chr11 6079337 6079363 -115764493 + (CACAG)n Simple_repeat Simple_repeat 5 31 0 1 631 777 122 12 2 chr11 6080661 6080807 -115763049 - B1_Mus1 SINE Alu -1 149 1 1 631 470 256 55 23 chr11 6080838 6080966 -115762890 - RSINE1 SINE B4 -29 136 5 1 631 730 238 156 48 chr11 6081081 6081395 -115762461 - Lx8 LINE L1 -247 7226 6879 1 631 215 93 0 23 chr11 6081471 6081515 -115762341 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 1 631 683 59 234 48 chr11 6081517 6081641 -115762215 - B1_Mus1 SINE Alu 0 148 2 1 631 207 69 0 0 chr11 6081675 6081704 -115762152 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 631 597 216 8 8 chr11 6081708 6081825 -115762031 - B3 SINE B2 -98 118 2 1 631 592 129 10 0 chr11 6082003 6082104 -115761752 + B2_Mm1a SINE B2 83 184 -9 1 631 22 0 0 0 chr11 6082534 6082556 -115761300 + AT_rich Low_complexity Low_complexity 1 22 0 1 631 536 307 54 44 chr11 6084129 6084446 -115759410 + L1MC LINE L1 5501 5820 -2062 1 631 532 149 19 9 chr11 6085111 6085219 -115758637 + CT-rich Low_complexity Low_complexity 6 114 0 1 631 1190 35 0 0 chr11 6086257 6086398 -115757458 + B1_Mm SINE Alu 1 141 -6 1 631 180 111 0 0 chr11 6086401 6086428 -115757428 + (A)n Simple_repeat Simple_repeat 1 27 0 1 631 259 331 24 30 chr11 6086934 6087099 -115756757 + MLT1A0 LTR MaLR 1 164 -201 1 631 315 227 59 49 chr11 6087165 6087267 -115756589 + ID_B1 SINE B4 122 224 0 1 631 505 207 8 57 chr11 6088669 6088792 -115755064 + PB1D10 SINE Alu 1 117 0 1 631 222 318 45 0 chr11 6088834 6088900 -115754956 + B4A SINE B4 11 79 -213 1 631 662 185 32 0 chr11 6089213 6089356 -115754500 + B1_Mur1 SINE Alu 1 148 -1 1 631 343 196 136 10 chr11 6089626 6089729 -115754127 + PB1D10 SINE Alu 1 116 -1 1 631 1140 121 17 0 chr11 6090367 6090541 -115753315 + Lx2 LINE L1 6468 6644 -353 1 631 1452 134 0 9 chr11 6090540 6090765 -115753091 + Lx2 LINE L1 6775 6997 0 1 631 1323 77 61 0 chr11 6090831 6091012 -115752844 + B2_Mm2 SINE B2 2 193 -2 1 631 235 50 0 111 chr11 6091067 6091112 -115752744 + B4 SINE B4 1 40 -252 1 631 583 191 8 1 chr11 6091124 6091234 -115752622 + B1_Mur1 SINE Alu 26 134 -15 1 631 348 43 0 0 chr11 6091237 6091283 -115752573 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 631 417 313 84 96 chr11 6091292 6091543 -115752313 + B4 SINE B4 43 290 -2 1 631 418 336 0 0 chr11 6091769 6091888 -115751968 + RSINE1 SINE B4 46 164 -1 1 631 452 194 250 0 chr11 6091911 6092019 -115751837 + B1_Mur2 SINE Alu 4 138 -11 1 631 611 204 23 0 chr11 6092399 6092531 -115751325 - B1F2 SINE Alu 0 149 15 1 631 383 179 19 104 chr11 6092598 6092704 -115751152 + MT2B LTR ERVL 162 258 -343 1 631 791 160 15 0 chr11 6092612 6092743 -115751113 + B1_Mus2 SINE Alu 10 142 -5 1 631 587 240 69 12 chr11 6092873 6093046 -115750810 + MLT1B LTR MaLR 163 345 -45 1 631 1129 65 0 0 chr11 6093513 6093651 -115750205 + B1_Mus1 SINE Alu 1 138 -10 1 631 432 0 0 0 chr11 6093651 6093699 -115750157 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 631 707 95 95 0 chr11 6093973 6094089 -115749767 - B1_Mur3 SINE Alu -13 136 10 1 631 555 183 126 30 chr11 6095057 6095192 -115748664 + B1_Mur1 SINE Alu 2 149 0 1 631 971 90 71 0 chr11 6095200 6095355 -115748501 + B2_Mm1t SINE B2 2 167 -26 1 631 431 88 274 7 chr11 6095401 6095514 -115748342 + B2_Mm2 SINE B2 46 193 -2 1 631 206 200 0 0 chr11 6095515 6095550 -115748306 + (CGA)n Simple_repeat Simple_repeat 2 36 0 1 631 998 64 0 108 chr11 6096103 6096261 -115747595 + B1_Mus2 SINE Alu 1 141 -6 1 631 228 35 0 0 chr11 6096264 6096293 -115747563 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 631 995 171 169 12 chr11 6096407 6096656 -115747200 - MTD LTR MaLR -14 405 118 1 631 1608 41 0 20 chr11 6096679 6096876 -115746980 - B2_Mm1a SINE B2 0 193 1 1 631 24 0 0 0 chr11 6097179 6097203 -115746653 + AT_rich Low_complexity Low_complexity 1 24 0 1 631 937 176 0 0 chr11 6097284 6097432 -115746424 + B1_Mur1 SINE Alu 2 149 0 1 631 894 153 0 28 chr11 6097537 6097678 -115746178 + B1_Mur4 SINE Alu 1 137 -13 1 631 329 226 324 0 chr11 6098774 6098876 -115744980 + B1_Mus1 SINE Alu 1 135 -13 1 631 504 196 53 9 chr11 6099212 6099325 -115744531 + B1F2 SINE Alu 27 144 -5 1 631 221 227 373 0 chr11 6100839 6100914 -115742942 + PB1D7 SINE Alu 12 114 -6 1 631 1561 183 60 76 chr11 6100954 6101403 -115742453 + RMER10A LTR ERVL 1 442 0 1 631 405 297 80 20 chr11 6101488 6101639 -115742217 + ID_B1 SINE B4 65 224 0 1 631 675 228 7 14 chr11 6101706 6101844 -115742012 - B1_Mur2 SINE Alu -6 143 7 1 631 778 83 0 0 chr11 6102048 6102157 -115741699 + B1_Mus1 SINE Alu 35 143 -5 1 631 761 146 95 0 chr11 6102225 6102362 -115741494 + B1_Mur4 SINE Alu 1 150 0 1 631 771 225 44 11 chr11 6102365 6102545 -115741311 + B3 SINE B2 27 212 -4 1 631 3666 80 10 23 chr11 6102658 6102844 -115741012 - RLTR19C LTR ERVK 0 506 329 1 631 1375 87 16 0 chr11 6102844 6103028 -115740828 + B2_Mm2 SINE B2 1 187 -8 1 631 3666 80 10 23 chr11 6103028 6103354 -115740502 - RLTR19C LTR ERVK -178 328 1 1 631 210 91 0 0 chr11 6103389 6103422 -115740434 + (A)n Simple_repeat Simple_repeat 1 33 0 1 631 437 311 135 25 chr11 6103682 6103926 -115739930 - B4A SINE B4 -19 273 3 1 631 311 268 74 68 chr11 6103977 6104125 -115739731 + B1F2 SINE Alu 1 149 0 1 631 858 48 186 0 chr11 6104260 6104384 -115739472 + B1_Mus1 SINE Alu 2 148 0 1 631 631 242 0 26 chr11 6104411 6104564 -115739292 + B1_Mur1 SINE Alu 1 149 0 1 631 396 242 84 0 chr11 6104602 6104697 -115739159 + B1F SINE Alu 1 103 -46 1 631 531 112 0 0 chr11 6104706 6104786 -115739070 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 1 631 520 248 162 9 chr11 6104801 6105017 -115738839 + L1MC3 LINE L1 5596 5844 -1941 1 631 240 35 0 0 chr11 6105043 6105072 -115738784 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 631 871 233 48 122 chr11 6105114 6105160 -115738696 - B4A SINE B4 -20 272 226 1 631 492 18 0 0 chr11 6105160 6105217 -115738639 + (TTGG)n Simple_repeat Simple_repeat 2 58 0 1 631 1082 86 0 0 chr11 6105220 6105360 -115738496 - B1_Mus1 SINE Alu -8 140 1 1 631 871 233 48 122 chr11 6105360 6105603 -115738253 - B4A SINE B4 -67 225 1 1 631 3848 110 75 12 chr11 6105810 6106523 -115737333 + RMER17A LTR ERVK 2 744 -7 1 631 2309 283 48 41 chr11 6106600 6106842 -115737014 - Lx8 LINE L1 -2 7471 7247 1 631 1958 159 116 6 chr11 6106842 6107195 -115736661 - ORR1B1 LTR MaLR -2 392 1 1 631 2309 283 48 41 chr11 6107195 6107788 -115736068 - Lx8 LINE L1 -227 7246 6630 1 631 588 264 100 90 chr11 6107790 6107831 -115736025 + B3 SINE B2 1 36 -180 1 631 1644 21 21 0 chr11 6107831 6108019 -115735837 + B2_Mm1t SINE B2 2 193 0 1 631 588 264 100 90 chr11 6108019 6108177 -115735679 + B3 SINE B2 37 202 -14 1 631 348 248 208 0 chr11 6108217 6108342 -115735514 - Lx8 LINE L1 -826 6647 6497 1 631 441 0 0 0 chr11 6108633 6108682 -115735174 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 631 297 0 0 0 chr11 6108682 6108714 -115735142 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 631 1915 92 18 0 chr11 6109160 6109441 -115734415 + ORR1A2 LTR MaLR 42 327 0 1 631 398 71 0 0 chr11 6109442 6109498 -115734358 + ORR1A3 LTR MaLR 271 326 0 1 631 398 71 0 0 chr11 6109499 6109555 -115734301 + ORR1A3 LTR MaLR 271 326 0 1 631 355 125 0 0 chr11 6109556 6109612 -115734244 + ORR1A3 LTR MaLR 271 326 0 1 631 364 107 0 0 chr11 6109613 6109669 -115734187 + ORR1A3 LTR MaLR 271 326 0 1 631 373 107 0 0 chr11 6109670 6109726 -115734130 + ORR1A3 LTR MaLR 271 326 0 1 631 373 107 0 0 chr11 6109727 6109783 -115734073 + ORR1A3 LTR MaLR 271 326 0 1 631 373 107 0 0 chr11 6109784 6109840 -115734016 + ORR1A3 LTR MaLR 271 326 0 1 631 320 161 0 0 chr11 6109841 6109897 -115733959 + ORR1A3 LTR MaLR 271 326 0 1 631 510 254 59 15 chr11 6110524 6110660 -115733196 - RSINE1 SINE B4 -21 144 3 1 631 599 242 159 0 chr11 6110698 6110855 -115733001 - B3 SINE B2 -6 210 29 1 631 1656 105 119 13 chr11 6110952 6111270 -115732586 - RLTR15 LTR ERVK -7 352 1 1 631 186 133 0 0 chr11 6112246 6112276 -115731580 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2 631 332 242 15 0 chr11 6113053 6113119 -115730737 + ID4_ SINE ID 4 70 -13 2 631 683 173 6 0 chr11 6113123 6113291 -115730565 + (TG)n Simple_repeat Simple_repeat 1 169 0 2 631 1294 83 22 27 chr11 6113291 6113476 -115730380 - B2_Mm2 SINE B2 -11 184 1 2 631 204 212 0 0 chr11 6113488 6113554 -115730302 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 631 564 214 0 0 chr11 6113568 6113746 -115730110 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 631 968 193 125 0 chr11 6115309 6115501 -115728355 - B3 SINE B2 0 216 1 2 631 412 274 20 32 chr11 6115596 6115710 -115728146 + PB1D7 SINE Alu 13 120 0 2 631 927 39 150 0 chr11 6115722 6115849 -115728007 + B1_Mus1 SINE Alu 3 148 0 2 631 509 227 126 0 chr11 6115971 6116090 -115727766 + ID_B1 SINE B4 86 219 -5 2 631 1286 34 0 0 chr11 6116489 6116636 -115727220 + B1_Mus1 SINE Alu 2 148 0 2 631 414 0 0 0 chr11 6117349 6117395 -115726461 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 631 1153 49 35 0 chr11 6119185 6119327 -115724529 + B1_Mm SINE Alu 1 147 0 2 631 347 335 118 18 chr11 6119347 6119687 -115724169 + L1M4c LINE L1 1272 1645 -4739 2 631 628 261 96 29 chr11 6119692 6119756 -115724100 + ID_B1 SINE B4 2 224 0 2 631 821 179 14 0 chr11 6119756 6119901 -115723955 + B1_Mur1 SINE Alu 3 149 0 2 631 669 311 91 33 chr11 6119928 6120357 -115723499 + L1M4c LINE L1 4708 5161 -1215 2 631 435 250 22 82 chr11 6120390 6120525 -115723331 + MT2B LTR ERVL 152 278 -323 2 631 911 125 15 0 chr11 6120414 6120550 -115723306 + B1_Mus1 SINE Alu 10 147 -1 2 631 434 281 89 24 chr11 6120562 6120970 -115722886 + L1M4c LINE L1 5229 5662 -754 2 631 1451 88 16 0 chr11 6120974 6121166 -115722690 + B2_Mm2 SINE B2 1 195 0 2 631 255 79 0 0 chr11 6121270 6121308 -115722548 + (A)n Simple_repeat Simple_repeat 1 38 0 2 631 965 176 129 31 chr11 6121319 6121513 -115722343 + B3 SINE B2 1 213 -3 2 631 288 0 0 0 chr11 6121732 6121764 -115722092 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2 631 903 116 62 31 chr11 6122357 6122517 -115721339 - B2_Mm2 SINE B2 -30 165 1 2 631 315 0 0 0 chr11 6122558 6122593 -115721263 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 631 1053 103 0 0 chr11 6122593 6122729 -115721127 - B1_Mus2 SINE Alu -11 136 1 2 631 1262 86 0 0 chr11 6123487 6123650 -115720206 - B2_Mm2 SINE B2 -31 164 2 2 631 247 276 73 37 chr11 6126290 6126399 -115717457 + MIRb SINE MIR 88 200 -68 2 631 363 291 64 0 chr11 6126409 6126519 -115717337 + PB1D10 SINE Alu 1 117 0 2 631 1355 83 11 6 chr11 6126548 6126730 -115717126 + B2_Mm2 SINE B2 3 185 -10 2 631 261 313 12 12 chr11 6126919 6127003 -115716853 + Charlie1b DNA MER1_type 57 140 -383 2 631 543 322 43 24 chr11 6127359 6127569 -115716287 + B3 SINE B2 2 215 -1 2 631 317 268 28 85 chr11 6131186 6131292 -115712564 - LTR16C LTR ERVL -12 477 378 2 631 484 124 134 5 chr11 6131456 6131549 -115712307 + B1_Mus2 SINE Alu 10 116 -4 2 631 256 161 0 31 chr11 6131999 6132063 -115711793 + CT-rich Low_complexity Low_complexity 2 63 0 2 631 223 366 14 0 chr11 6132417 6132488 -115711368 - ID4_ SINE ID -9 74 3 2 631 415 264 76 49 chr11 6132975 6133198 -115710658 + L1MB4 LINE L1 7 235 -6372 2 631 983 108 0 7 chr11 6133267 6133407 -115710449 + B1_Mur4 SINE Alu 6 144 -6 2 631 324 0 0 0 chr11 6133410 6133446 -115710410 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 631 600 247 24 29 chr11 6133765 6133912 -115709944 - B1F SINE Alu -16 133 2 2 631 457 262 23 53 chr11 6133795 6133928 -115709928 - ID_B1 SINE B4 -26 198 70 2 631 388 268 49 67 chr11 6134038 6134202 -115709654 + L1MC LINE L1 2880 3040 -3106 2 631 1373 208 63 16 chr11 6134316 6134633 -115709223 - RMER20A LTR ERVK -54 462 131 2 631 1451 123 78 51 chr11 6134638 6134895 -115708961 + MT2B2 LTR ERVL 1 264 -320 2 631 1056 31 0 0 chr11 6134803 6134930 -115708926 + B1_Mus1 SINE Alu 22 148 0 2 631 180 0 0 0 chr11 6134950 6134970 -115708886 + (CAAAG)n Simple_repeat Simple_repeat 2 21 0 2 631 3088 91 5 21 chr11 6134970 6135391 -115708465 + MT2B2 LTR ERVL 160 573 -11 2 631 1747 186 152 15 chr11 6135401 6135862 -115707994 - RMER16-int LTR ERVK -4627 779 256 2 631 368 254 59 15 chr11 6136072 6136208 -115707648 - RMER16-int LTR ERVK -6934 310 169 2 631 621 252 15 0 chr11 6136748 6136879 -115706977 - ETnERV2-int LTR ERVK -204 7202 7070 2 631 3454 138 9 9 chr11 6136898 6137459 -115706397 + MERVL_2A-int LTR ERVL 4959 5519 -242 2 631 405 223 104 35 chr11 6137467 6137611 -115706245 + ORR1A3-int LTR MaLR 487 640 -1323 2 631 1261 47 0 0 chr11 6137647 6137795 -115706061 + B1_Mus1 SINE Alu 1 148 0 2 631 201 39 0 0 chr11 6137811 6137837 -115706019 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 631 1709 74 0 0 chr11 6137851 6138068 -115705788 + MT2B2 LTR ERVL 1 217 -367 2 631 367 275 44 0 chr11 6138096 6138187 -115705669 - RMER20A LTR ERVK -411 105 11 2 631 746 189 0 39 chr11 6138281 6138435 -115705421 - B1_Mur1 SINE Alu 0 149 2 2 631 209 200 0 0 chr11 6138550 6138585 -115705271 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 631 240 170 0 0 chr11 6138591 6138638 -115705218 + B1_Mus2 SINE Alu 100 146 -1 2 631 547 212 20 0 chr11 6138656 6138755 -115705101 + B3 SINE B2 3 103 -113 2 631 2655 44 6 226 chr11 6138755 6139255 -115704601 + RLTR10 LTR ERVK 1 390 0 2 631 7839 24 7 4 chr11 6139265 6140210 -115703646 + RLTR10-int LTR ERVK 41 988 -999 2 631 8666 13 0 0 chr11 6140289 6141284 -115702572 + RLTR10-int LTR ERVK 990 1984 -3 2 631 2655 44 6 226 chr11 6141286 6141786 -115702070 + RLTR10 LTR ERVK 1 390 0 2 631 586 131 93 9 chr11 6141786 6141843 -115702013 + B3 SINE B2 98 162 -54 2 631 447 19 0 0 chr11 6141843 6141895 -115701961 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 631 586 131 93 9 chr11 6141895 6141945 -115701911 + B3 SINE B2 163 214 -2 2 631 230 164 18 0 chr11 6141952 6142007 -115701849 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 631 24 53 0 0 chr11 6142035 6142073 -115701783 + AT_rich Low_complexity Low_complexity 1 38 0 2 631 255 204 0 0 chr11 6142079 6142128 -115701728 + Lx9 LINE L1 6985 7033 -611 2 631 1299 120 10 5 chr11 6142130 6142323 -115701533 + B2_Mm2 SINE B2 2 195 0 2 631 888 111 0 0 chr11 6142785 6142920 -115700936 + (GGAA)n Simple_repeat Simple_repeat 3 137 0 2 631 875 221 47 55 chr11 6142920 6143169 -115700687 + Lx9 LINE L1 7024 7271 -373 2 631 1743 132 136 52 chr11 6143170 6143216 -115700640 - RMER10B LTR ERVL 0 398 356 2 631 180 0 0 0 chr11 6143216 6143236 -115700620 + (ATTAG)n Simple_repeat Simple_repeat 3 22 0 2 631 1743 132 136 52 chr11 6143236 6143556 -115700300 - RMER10B LTR ERVL -43 355 3 2 631 1137 200 111 18 chr11 6143556 6143897 -115699959 + Lx9 LINE L1 7272 7644 0 2 631 310 49 0 0 chr11 6143942 6143983 -115699873 + B2_Mm2 SINE B2 1 41 -154 2 631 917 90 138 0 chr11 6143977 6144122 -115699734 + RLTR1B LTR ERV1 348 512 0 2 631 20378 47 49 32 chr11 6144122 6147288 -115696568 + RLTR1B-int LTR ERV1 1 3299 0 2 631 2284 113 112 12 chr11 6147288 6147757 -115696099 + RLTR1B LTR ERV1 1 552 -72 2 631 1088 98 26 0 chr11 6147775 6147928 -115695928 + B2_Mm2 SINE B2 27 183 -12 2 631 313 150 319 9 chr11 6147977 6148090 -115695766 + B2_Mm2 SINE B2 47 194 -1 2 631 606 158 149 52 chr11 6148117 6148251 -115695605 - B1_Mm SINE Alu 0 147 1 2 631 618 269 73 12 chr11 6148266 6148511 -115695345 + L1M3 LINE L1 3359 3618 -2522 2 631 1222 42 0 0 chr11 6148707 6148849 -115695007 + B1_Mus1 SINE Alu 1 142 -6 2 631 405 0 0 0 chr11 6148851 6148896 -115694960 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 631 503 218 77 31 chr11 6148964 6149145 -115694711 + RMER1B Other Other 353 523 -543 2 631 774 181 30 0 chr11 6149244 6149377 -115694479 + B1_Mur2 SINE Alu 7 143 -6 2 631 531 0 0 0 chr11 6149396 6149455 -115694401 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 631 381 194 108 39 chr11 6149467 6149569 -115694287 + B1_Mur4 SINE Alu 42 150 0 2 631 27 0 0 0 chr11 6149583 6149610 -115694246 + AT_rich Low_complexity Low_complexity 1 27 0 2 631 356 254 230 0 chr11 6149685 6149894 -115693962 + L1M3 LINE L1 4421 4677 -1463 2 631 893 132 80 128 chr11 6149897 6150037 -115693819 + URR1B DNA MER1_type 11 157 -68 2 631 1024 108 258 0 chr11 6150037 6150204 -115693652 + B3 SINE B2 1 210 -6 2 631 893 132 80 128 chr11 6150204 6150289 -115693567 + URR1B DNA MER1_type 158 225 0 2 631 282 299 18 143 chr11 6150401 6150569 -115693287 - RSINE1 SINE B4 -8 157 11 2 631 444 211 27 63 chr11 6150696 6150807 -115693049 - PB1D7 SINE Alu -13 107 1 2 631 293 195 85 0 chr11 6150807 6150889 -115692967 + L1MB4 LINE L1 6092 6180 0 2 631 1158 95 0 0 chr11 6150898 6151045 -115692811 + B1_Mm SINE Alu 1 147 0 2 631 240 59 0 0 chr11 6151054 6151088 -115692768 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 631 250 281 130 9 chr11 6151375 6151490 -115692366 - MER20 DNA MER1_type -84 135 7 2 631 180 269 25 148 chr11 6151490 6151612 -115692244 + L2b LINE L2 3128 3234 -141 2 631 678 167 0 40 chr11 6153915 6154040 -115689816 + MTC LTR MaLR 1 120 -301 2 631 5303 79 100 18 chr11 6154044 6154709 -115689147 - L1_Mus3 LINE L1 0 6638 5910 2 631 2563 74 30 3 chr11 6154709 6155046 -115688810 + ORR1A1 LTR MaLR 1 346 0 2 631 5303 79 100 18 chr11 6155046 6155151 -115688705 - L1_Mus3 LINE L1 -729 5909 5805 2 631 5784 68 26 31 chr11 6155152 6156004 -115687852 + MusHAL1 LINE L1 1195 2057 -655 2 631 2137 55 0 0 chr11 6156004 6156261 -115687595 + L1Md_T LINE L1 6326 6582 0 2 631 5784 68 26 31 chr11 6156261 6156304 -115687552 + MusHAL1 LINE L1 2058 2085 -627 2 631 1396 181 94 4 chr11 6156308 6156585 -115687271 + MTC LTR MaLR 108 409 -12 2 631 2040 189 260 20 chr11 6156608 6157309 -115686547 + RMER1A Other Other 46 1019 -11 2 631 439 324 51 7 chr11 6157562 6157699 -115686157 - RSINE1 SINE B4 -7 158 16 2 631 689 282 66 39 chr11 6157909 6158167 -115685689 - B4A SINE B4 -27 265 1 2 631 951 137 14 0 chr11 6159765 6159911 -115683945 + B1_Mus1 SINE Alu 1 148 0 2 631 1135 95 42 0 chr11 6159913 6160081 -115683775 + B2_Mm1t SINE B2 14 188 -5 2 632 919 158 20 20 chr11 6160775 6160924 -115682932 - B1_Mur4 SINE Alu 0 150 2 2 632 501 194 87 0 chr11 6163185 6163288 -115680568 - B1F SINE Alu -9 140 29 2 632 711 236 121 0 chr11 6163341 6163505 -115680351 - B3 SINE B2 0 216 33 2 632 1104 62 48 0 chr11 6163505 6163651 -115680205 + B2_Mm2 SINE B2 1 153 -42 3 632 252 0 0 0 chr11 6163651 6163679 -115680177 + (CATA)n Simple_repeat Simple_repeat 4 31 0 3 632 268 337 21 10 chr11 6163773 6163869 -115679987 - B1F1 SINE Alu -51 98 2 3 632 766 228 36 15 chr11 6164917 6165113 -115678743 + B3 SINE B2 5 204 -12 3 632 249 33 0 0 chr11 6165115 6165145 -115678711 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 3 632 368 273 0 0 chr11 6165230 6165307 -115678549 + ID4_ SINE ID 5 81 -2 3 632 303 330 73 36 chr11 6165331 6165441 -115678415 + PB1D7 SINE Alu 1 114 -6 3 632 234 143 0 0 chr11 6168324 6168373 -115675483 + (T)n Simple_repeat Simple_repeat 1 49 0 3 632 1182 69 0 7 chr11 6168374 6168520 -115675336 - B1_Mus1 SINE Alu -1 147 3 3 632 610 138 207 0 chr11 6168534 6168650 -115675206 - B1_Mur1 SINE Alu -1 148 9 3 632 241 208 0 226 chr11 6168568 6168661 -115675195 - MT2B LTR ERVL -364 237 166 3 632 224 222 18 36 chr11 6168896 6168952 -115674904 + ID4 SINE ID 18 72 -11 3 632 1263 173 23 0 chr11 6169057 6169277 -115674579 - URR1B DNA MER1_type 0 225 1 3 632 1083 51 65 0 chr11 6169666 6169804 -115674052 + B1_Mus1 SINE Alu 2 148 0 3 632 751 123 140 44 chr11 6169964 6170100 -115673756 + B1_Mur3 SINE Alu 1 149 0 3 632 32 57 0 0 chr11 6170391 6170444 -115673412 + AT_rich Low_complexity Low_complexity 1 53 0 3 632 228 327 50 58 chr11 6170754 6170797 -115673059 + B4A SINE B4 45 86 -206 3 632 333 224 109 34 chr11 6170797 6170902 -115672954 + B1_Mur2 SINE Alu 4 116 -1 3 632 275 197 66 0 chr11 6172118 6172179 -115671677 + L1MB3 LINE L1 5768 5832 -348 3 632 847 168 15 0 chr11 6172179 6172316 -115671540 + B1_Mur3 SINE Alu 1 139 -10 3 632 814 250 0 0 chr11 6172345 6172525 -115671331 + B3A SINE B2 3 182 -16 3 632 414 163 0 0 chr11 6172525 6172623 -115671233 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 632 284 286 0 0 chr11 6172671 6172727 -115671129 + ID4_ SINE ID 26 81 -2 3 632 298 229 36 0 chr11 6172738 6172821 -115671035 + L1MB3 LINE L1 5815 5900 -283 3 632 1268 34 0 7 chr11 6172858 6173006 -115670850 + B1_Mus2 SINE Alu 1 147 0 3 632 374 227 114 18 chr11 6173128 6173294 -115670562 + L1MB3 LINE L1 5998 6179 -4 3 632 654 190 43 0 chr11 6173313 6173429 -115670427 + 5S rRNA rRNA 1 121 0 3 632 239 247 43 0 chr11 6173436 6173529 -115670327 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 632 241 195 0 0 chr11 6173529 6173570 -115670286 + ID4 SINE ID 3 43 -40 3 632 320 281 85 0 chr11 6175346 6175428 -115668428 - ID_B1 SINE B4 -123 101 13 3 632 1792 190 70 24 chr11 6175529 6175912 -115667944 + MTD LTR MaLR 18 418 -1 3 632 441 0 0 0 chr11 6175912 6175961 -115667895 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 632 712 146 0 39 chr11 6176393 6176521 -115667335 - B1_Mur3 SINE Alu 0 149 27 3 632 317 293 86 39 chr11 6176431 6176559 -115667297 - B4 SINE B4 -87 205 72 3 632 1197 61 0 13 chr11 6177292 6177441 -115666415 + B1_Mus2 SINE Alu 1 147 0 3 632 264 43 0 21 chr11 6177498 6177546 -115666310 - B2_Mm2 SINE B2 -7 188 142 3 632 1425 96 0 0 chr11 6177546 6177733 -115666123 - B2_Mm2 SINE B2 -8 187 1 3 632 664 238 27 20 chr11 6177846 6177992 -115665864 + B1_Mur2 SINE Alu 2 148 -1 3 632 331 305 62 10 chr11 6178049 6178145 -115665711 + RSINE1 SINE B4 29 129 -36 3 632 298 143 0 0 chr11 6178146 6178188 -115665668 - B3 SINE B2 -163 53 12 3 632 48 81 0 0 chr11 6178200 6178311 -115665545 + AT_rich Low_complexity Low_complexity 1 111 0 3 632 240 275 217 11 chr11 6178366 6178458 -115665398 + B3 SINE B2 106 216 0 3 632 769 150 7 41 chr11 6178463 6178609 -115665247 + B1_Mus2 SINE Alu 1 141 -6 3 632 183 80 0 0 chr11 6178611 6178636 -115665220 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3 632 630 227 109 13 chr11 6178710 6178866 -115664990 + B3 SINE B2 2 172 -44 3 632 987 75 0 0 chr11 6178878 6179011 -115664845 + (GAA)n Simple_repeat Simple_repeat 3 135 0 3 632 530 329 28 0 chr11 6179022 6179161 -115664695 + B4A SINE B4 86 228 -64 3 632 505 308 63 0 chr11 6179161 6179304 -115664552 + RSINE1 SINE B4 2 153 -12 3 632 1180 107 11 11 chr11 6179365 6179545 -115664311 + B2_Mm2 SINE B2 1 180 -15 3 632 1063 103 7 0 chr11 6179545 6179691 -115664165 + B1_Mus2 SINE Alu 1 147 0 3 632 387 162 0 0 chr11 6179694 6179774 -115664082 + A-rich Low_complexity Low_complexity 1 80 0 3 632 1806 182 32 27 chr11 6179789 6180161 -115663695 + ORR1D1 LTR MaLR 1 374 0 3 632 705 151 39 31 chr11 6180339 6180469 -115663387 - B1_Mur4 SINE Alu 0 150 20 3 632 2823 139 41 43 chr11 6180469 6180957 -115662899 + RLTR1C LTR ERV1 1 487 -16 3 632 330 51 63 13 chr11 6180995 6181074 -115662782 + (TTTTG)n Simple_repeat Simple_repeat 3 85 0 3 632 1139 75 7 0 chr11 6181074 6181220 -115662636 - B1_Mus2 SINE Alu 0 147 1 3 632 1102 191 258 6 chr11 6181247 6181569 -115662287 - Lx9 LINE L1 -34 7610 7208 3 632 416 289 14 89 chr11 6181585 6181742 -115662114 - B3A SINE B2 -28 188 46 3 632 310 198 188 0 chr11 6181742 6181814 -115662042 - RLTR20A LTR ERVK 0 578 467 3 632 258 250 0 53 chr11 6181797 6181873 -115661983 + RMER16 LTR ERVK 462 533 0 3 632 894 193 9 96 chr11 6181876 6182105 -115661751 - RLTR20A LTR ERVK -332 209 1 3 632 539 273 119 0 chr11 6182386 6182580 -115661276 + L1M3 LINE L1 3992 4208 -1932 3 632 783 87 104 0 chr11 6182580 6182695 -115661161 + B1_Mus1 SINE Alu 11 137 -11 3 632 373 19 0 36 chr11 6182696 6182752 -115661104 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 632 768 61 0 0 chr11 6182826 6182924 -115660932 - B1_Mus1 SINE Alu -49 99 2 3 632 360 0 0 0 chr11 6182925 6182965 -115660891 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 632 318 50 0 0 chr11 6183440 6183480 -115660376 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 3 632 1348 76 16 11 chr11 6183489 6183676 -115660180 - B2_Mm1t SINE B2 -5 188 1 3 632 1128 75 0 7 chr11 6183695 6183843 -115660013 - B1_Mm SINE Alu 0 147 1 3 632 317 24 0 23 chr11 6183847 6183890 -115659966 + (CCCCCT)n Simple_repeat Simple_repeat 3 44 0 3 632 768 22 0 0 chr11 6183890 6183980 -115659876 + (TTC)n Simple_repeat Simple_repeat 2 91 0 3 632 1205 48 0 14 chr11 6184029 6184176 -115659680 + B1_Mus2 SINE Alu 2 146 -1 3 632 1269 207 96 4 chr11 6184591 6184862 -115658994 + MTD LTR MaLR 1 296 -123 3 632 1164 49 14 0 chr11 6184885 6185027 -115658829 + B1_Mus1 SINE Alu 5 148 0 3 632 288 0 0 0 chr11 6185028 6185060 -115658796 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 3 632 356 322 59 0 chr11 6185118 6185236 -115658620 + PB1 SINE Alu 1 125 -2 3 632 1135 145 0 22 chr11 6185248 6185431 -115658425 + B2_Mm2 SINE B2 3 181 -14 3 632 294 275 0 55 chr11 6185452 6185525 -115658331 + PB1D10 SINE Alu 48 116 -1 3 632 517 213 30 71 chr11 6185565 6185753 -115658103 + L1M3 LINE L1 5164 5340 -803 3 632 1178 280 10 30 chr11 6185888 6186183 -115657673 - B4A SINE B4 0 292 4 3 632 3183 51 5 10 chr11 6186650 6187048 -115656808 - MTA_Mm LTR MaLR 0 396 1 3 632 237 33 0 0 chr11 6187053 6187083 -115656773 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 632 2309 101 3 44 chr11 6187090 6187347 -115656509 + ORR1A4 LTR MaLR 1 252 -77 3 632 3492 23 5 2 chr11 6187347 6187742 -115656114 - MTA_Mm LTR MaLR 0 396 1 3 632 8800 47 10 3 chr11 6187742 6188832 -115655024 - MTA_Mm-int LTR MaLR 0 1098 1 3 632 3348 43 5 2 chr11 6188832 6189227 -115654629 - MTA_Mm LTR MaLR 0 396 1 3 632 2309 101 3 44 chr11 6189227 6189310 -115654546 + ORR1A4 LTR MaLR 253 327 -2 3 632 742 183 30 0 chr11 6189310 6189437 -115654419 - B1_Mus1 SINE Alu -16 132 2 3 632 32 0 0 0 chr11 6189473 6189505 -115654351 + AT_rich Low_complexity Low_complexity 1 32 0 3 632 997 80 51 0 chr11 6189505 6189643 -115654213 - B1_Mm SINE Alu -1 146 2 3 632 634 75 274 0 chr11 6189782 6189888 -115653968 + B1_Mus1 SINE Alu 1 135 -13 3 632 186 71 0 0 chr11 6189888 6189916 -115653940 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 632 1292 51 73 11 chr11 6189956 6190135 -115653721 - B2_Mm2 SINE B2 -5 190 1 3 632 426 292 87 7 chr11 6190543 6190681 -115653175 + ID_B1 SINE B4 76 224 0 3 632 320 294 125 16 chr11 6190714 6190842 -115653014 - B1F1 SINE Alu -7 142 1 3 632 642 176 80 7 chr11 6190864 6191001 -115652855 - B1_Mus2 SINE Alu 0 147 1 3 632 569 305 85 5 chr11 6192483 6192694 -115651162 - LTR31 LTR ERV1 -180 439 212 3 632 22 0 0 0 chr11 6193057 6193079 -115650777 + AT_rich Low_complexity Low_complexity 1 22 0 3 632 372 303 73 0 chr11 6193106 6193215 -115650641 - RSINE1 SINE B4 -12 153 37 3 632 453 282 84 4 chr11 6193238 6193501 -115650355 - L1MD LINE L1 -3676 2470 2187 3 632 21 36 0 0 chr11 6193906 6193934 -115649922 + AT_rich Low_complexity Low_complexity 1 28 0 3 632 1120 75 7 0 chr11 6193997 6194144 -115649712 + B1_Mus1 SINE Alu 1 148 0 3 632 940 290 7 51 chr11 6194714 6194990 -115648866 + B4 SINE B4 15 278 -14 3 632 233 128 77 0 chr11 6195109 6195148 -115648708 - PB1D7 SINE Alu -60 60 19 3 632 229 286 0 0 chr11 6195353 6195402 -115648454 - ID4_ SINE ID -20 63 15 3 632 652 252 112 24 chr11 6195442 6195628 -115648228 - B3 SINE B2 -6 189 1 3 632 306 185 57 129 chr11 6195716 6195840 -115648016 - PB1D9 SINE Alu -1 119 5 3 632 216 0 0 0 chr11 6195859 6195883 -115647973 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 632 882 53 35 0 chr11 6195883 6195996 -115647860 - B1_Mus1 SINE Alu -13 135 19 4 632 887 219 30 15 chr11 6196022 6196221 -115647635 - B3 SINE B2 -14 202 1 4 632 213 154 0 0 chr11 6198201 6198240 -115645616 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 632 228 308 96 70 chr11 6198348 6198384 -115645472 - MT2B LTR ERVL -279 322 191 4 632 362 327 9 17 chr11 6198384 6198499 -115645357 - ID_B1 SINE B4 -24 200 87 4 632 233 366 11 11 chr11 6199055 6199149 -115644707 + Charlie4z DNA MER1_type 51 144 -23 4 632 491 301 129 65 chr11 6199205 6199468 -115644388 + B4A SINE B4 1 280 -12 4 632 545 299 42 31 chr11 6199511 6199704 -115644152 + ID_B1 SINE B4 30 224 0 4 632 564 191 146 0 chr11 6199700 6199810 -115644046 + B3 SINE B2 1 126 -90 4 632 207 69 0 0 chr11 6199810 6199839 -115644017 + (A)n Simple_repeat Simple_repeat 1 29 0 4 632 216 0 0 0 chr11 6199874 6199898 -115643958 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 632 714 222 7 14 chr11 6199908 6200054 -115643802 - B1_Mus2 SINE Alu -1 146 2 4 632 412 283 58 70 chr11 6200826 6200846 -115643010 - B4A SINE B4 -47 245 163 4 632 1026 75 8 0 chr11 6200846 6200979 -115642877 - B1_Mus2 SINE Alu -2 145 12 4 632 412 283 58 70 chr11 6200979 6200997 -115642859 - B4A SINE B4 -47 162 77 4 632 25 31 0 0 chr11 6201499 6201531 -115642325 + AT_rich Low_complexity Low_complexity 1 32 0 4 632 675 217 65 0 chr11 6201531 6201669 -115642187 - B1_Mur1 SINE Alu 0 149 3 4 632 663 296 48 67 chr11 6201747 6201957 -115641899 - B4A SINE B4 0 292 87 4 632 1373 96 11 0 chr11 6201957 6202145 -115641711 - B2_Mm1t SINE B2 -3 190 1 4 632 230 324 0 26 chr11 6202163 6202239 -115641617 - ID2 SINE ID -9 74 1 4 632 285 295 13 0 chr11 6202337 6202415 -115641441 - ID2 SINE ID -4 79 1 4 632 486 303 145 104 chr11 6202485 6202706 -115641150 - B4 SINE B4 -18 274 45 4 632 3885 37 0 0 chr11 6203261 6203716 -115640140 - L1Md_T LINE L1 0 6582 6128 4 632 212 180 0 57 chr11 6203939 6203992 -115639864 + A-rich Low_complexity Low_complexity 3 52 0 4 632 1148 113 39 6 chr11 6204639 6204817 -115639039 - B2_Mm2 SINE B2 -11 184 1 4 632 626 206 23 38 chr11 6206891 6207022 -115636834 - RSINE1 SINE B4 -21 144 16 4 632 603 211 44 0 chr11 6207059 6207173 -115636683 + PB1D9 SINE Alu 2 120 0 4 632 214 270 0 100 chr11 6207312 6207382 -115636474 + B1F2 SINE Alu 9 71 -78 4 632 490 308 54 7 chr11 6207827 6207974 -115635882 + B4A SINE B4 137 290 -2 4 632 1137 61 0 26 chr11 6209536 6209687 -115634169 - B1_Mus1 SINE Alu 0 148 2 4 632 1639 37 0 0 chr11 6209934 6210124 -115633732 + B2_Mm1a SINE B2 1 190 -3 4 632 382 250 0 12 chr11 6210139 6210220 -115633636 - B4A SINE B4 -184 108 29 4 632 596 259 217 0 chr11 6210229 6210395 -115633461 - B4 SINE B4 -51 241 40 4 632 661 217 29 14 chr11 6210448 6210588 -115633268 + ID_B1 SINE B4 81 222 -2 4 632 263 301 0 14 chr11 6210600 6210674 -115633182 + ID4 SINE ID 4 76 -7 4 632 1212 54 7 0 chr11 6211671 6211818 -115632038 + B1_Mus1 SINE Alu 1 148 0 4 632 630 243 22 7 chr11 6211957 6212094 -115631762 - B1_Mur4 SINE Alu -10 140 2 4 632 264 30 0 0 chr11 6212110 6212143 -115631713 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 632 890 138 36 24 chr11 6212145 6212327 -115631529 - B3 SINE B2 -9 186 1 4 632 252 361 0 0 chr11 6212591 6212674 -115631182 + ID4 SINE ID 1 83 0 4 632 561 278 107 15 chr11 6213128 6213325 -115630531 + B3 SINE B2 1 215 -1 4 632 28 99 0 0 chr11 6213326 6213417 -115630439 + AT_rich Low_complexity Low_complexity 1 91 0 4 632 1191 137 11 0 chr11 6213473 6213655 -115630201 + B2_Mm1t SINE B2 1 184 -9 4 632 787 193 22 0 chr11 6214969 6215104 -115628752 + B1_Mur1 SINE Alu 3 140 -9 4 632 2570 164 60 4 chr11 6215161 6215657 -115628199 - RLTR11A2 LTR ERVK 0 527 4 4 632 502 207 69 0 chr11 6215657 6215773 -115628083 - RLTR11B LTR ERVK -329 124 1 4 632 218 288 11 101 chr11 6215790 6215879 -115627977 - ID4_ SINE ID -2 81 1 4 632 870 232 67 5 chr11 6215903 6216098 -115627758 - B3 SINE B2 -9 207 1 4 632 210 71 0 0 chr11 6216201 6216229 -115627627 + (ATG)n Simple_repeat Simple_repeat 1 28 0 4 632 1109 80 42 36 chr11 6216459 6216627 -115627229 + B2_Mm2 SINE B2 27 195 0 4 632 558 274 132 35 chr11 6218226 6218423 -115625433 + B4A SINE B4 17 232 -60 4 632 475 270 108 0 chr11 6218728 6218876 -115624980 + RSINE1 SINE B4 2 165 0 4 632 250 180 66 2 chr11 6218959 6219022 -115624834 - B1_Mus1 SINE Alu -48 69 6 4 632 681 80 295 0 chr11 6219118 6219230 -115624626 + B1_Mm SINE Alu 1 145 -2 4 632 629 247 7 33 chr11 6220587 6220738 -115623118 - ID_B1 SINE B4 0 224 78 4 632 308 211 0 0 chr11 6220893 6220950 -115622906 - ID4 SINE ID -19 64 8 4 632 1434 49 32 5 chr11 6221824 6222010 -115621846 + B2_Mm1t SINE B2 3 193 0 4 632 1847 150 168 39 chr11 6222140 6222528 -115621328 - RMER16 LTR ERVK 0 533 96 4 632 1199 42 14 0 chr11 6222844 6222988 -115620868 - B1_Mm SINE Alu -1 146 1 4 632 403 309 8 0 chr11 6223203 6223326 -115620530 - PB1 SINE Alu -3 124 1 4 632 405 0 0 0 chr11 6224677 6224722 -115619134 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 632 22 35 0 0 chr11 6225044 6225073 -115618783 + AT_rich Low_complexity Low_complexity 1 29 0 4 632 353 226 29 0 chr11 6225715 6225817 -115618039 - L1MD1 LINE L1 -254 6379 6275 4 632 240 306 66 8 chr11 6225917 6226039 -115617817 - L1MD1 LINE L1 -975 5562 5434 4 632 355 266 138 0 chr11 6226043 6226137 -115617719 + PB1D7 SINE Alu 6 112 -8 4 632 369 283 135 68 chr11 6226138 6226301 -115617555 - L1MD1 LINE L1 -1134 5403 5230 4 632 459 181 0 46 chr11 6226301 6226388 -115617468 + RSINE1 SINE B4 22 104 -61 4 632 530 266 175 51 chr11 6226719 6227390 -115616466 - L1MD1 LINE L1 -2781 3756 2975 4 632 1356 91 11 0 chr11 6227390 6227577 -115616279 - B2_Mm1t SINE B2 -4 189 1 4 632 530 266 175 51 chr11 6227577 6227703 -115616153 - L1MD1 LINE L1 -3563 2974 2860 4 632 440 232 29 107 chr11 6227703 6227843 -115616013 - B1F SINE Alu 0 149 21 4 632 460 251 102 37 chr11 6227869 6228113 -115615743 - L1MD1 LINE L1 -3684 2853 2594 4 632 1674 37 0 0 chr11 6228115 6228306 -115615550 - B2_Mm1t SINE B2 -2 191 1 4 632 323 246 123 50 chr11 6228336 6228467 -115615389 - L1MD1 LINE L1 -3940 2617 2469 4 632 1468 84 16 0 chr11 6228913 6229104 -115614752 + B2_Mm2 SINE B2 2 195 0 4 632 532 246 8 34 chr11 6229186 6229304 -115614552 - RSINE1 SINE B4 -36 129 15 4 632 637 278 182 58 chr11 6229327 6230080 -115613776 - L1MD1 LINE L1 -4214 2419 1574 4 632 549 258 70 44 chr11 6230291 6230449 -115613407 - RSINE1 SINE B4 0 165 4 4 632 239 240 144 0 chr11 6230471 6230575 -115613281 - L1MD1 LINE L1 -5356 1277 1159 4 632 377 273 35 43 chr11 6230631 6230644 -115613212 - PB1D10 SINE Alu 0 117 107 4 632 242 0 0 57 chr11 6230644 6230679 -115613177 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 632 379 266 42 3 chr11 6230679 6230780 -115613076 - B1_Mur2 SINE Alu -11 106 4 4 632 376 153 140 18 chr11 6230903 6231022 -115612834 - B2_Mm2 SINE B2 0 193 47 4 632 1255 91 17 0 chr11 6231089 6231264 -115612592 - B2_Mm1t SINE B2 -15 178 1 4 632 409 190 160 0 chr11 6231306 6231406 -115612450 - ID_B1 SINE B4 0 224 109 4 632 325 205 208 24 chr11 6231406 6231431 -115612425 - B1F SINE Alu -1 148 1 4 632 511 260 16 8 chr11 6231450 6231578 -115612278 - RSINE1 SINE B4 -36 129 1 4 632 420 271 181 32 chr11 6231813 6232095 -115611761 - L1MD1 LINE L1 -6264 369 46 4 632 290 340 87 0 chr11 6232397 6232432 -115611424 - PB1D10 SINE Alu -4 113 39 4 632 318 189 0 0 chr11 6232432 6232485 -115611371 - ID_B1 SINE B4 -67 157 105 4 632 290 340 87 0 chr11 6232485 6232500 -115611356 - PB1D10 SINE Alu -4 38 2 4 632 362 324 64 9 chr11 6232554 6232663 -115611193 + PB1D10 SINE Alu 1 115 -2 4 632 306 110 36 12 chr11 6232884 6232967 -115610889 + T-rich Low_complexity Low_complexity 2 86 0 4 632 634 184 28 0 chr11 6233044 6233153 -115610703 + PB1D9 SINE Alu 1 112 -8 4 632 356 0 23 0 chr11 6233153 6233197 -115610659 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 632 308 266 159 30 chr11 6233279 6233411 -115610445 + B1_Mur2 SINE Alu 1 149 0 4 632 213 121 0 0 chr11 6234418 6234451 -115609405 + (T)n Simple_repeat Simple_repeat 1 33 0 4 632 1498 52 0 20 chr11 6234742 6234938 -115608918 - B2_Mm1t SINE B2 0 193 2 4 632 28 71 0 0 chr11 6235002 6235058 -115608798 + AT_rich Low_complexity Low_complexity 1 56 0 4 632 557 204 11 0 chr11 6235855 6235948 -115607908 + B1_Mur4 SINE Alu 1 94 -56 4 632 237 181 255 0 chr11 6235959 6236053 -115607803 + MER33 DNA MER1_type 135 252 -72 4 632 411 165 179 34 chr11 6237072 6237185 -115606671 + B1F2 SINE Alu 26 149 0 4 632 264 111 0 0 chr11 6237835 6237880 -115605976 + (TGG)n Simple_repeat Simple_repeat 3 47 0 4 632 524 227 10 0 chr11 6237881 6237978 -115605878 + B1_Mur1 SINE Alu 10 107 -42 4 632 689 34 11 11 chr11 6238434 6238523 -115605333 + ORR1A1 LTR MaLR 258 346 0 4 632 932 76 196 31 chr11 6238736 6238899 -115604957 + B2_Mm2 SINE B2 1 190 -5 4 632 340 343 28 14 chr11 6239428 6239570 -115604286 + B1F SINE Alu 5 148 -1 4 632 665 216 43 0 chr11 6240280 6240419 -115603437 - B1_Mus1 SINE Alu 0 148 4 4 632 534 200 107 8 chr11 6241267 6241398 -115602458 + B3A SINE B2 2 145 -53 4 632 340 98 0 19 chr11 6241387 6241439 -115602417 + ORR1A1 LTR MaLR 296 346 0 4 632 1977 102 53 0 chr11 6241439 6241714 -115602142 - ORR1A2 LTR MaLR -37 290 1 4 632 553 132 8 136 chr11 6241737 6241869 -115601987 + ORR1A1 LTR MaLR 1 115 -231 5 632 655 209 93 55 chr11 6242726 6242908 -115600948 + B2_Mm2 SINE B2 1 189 -6 5 632 210 71 0 0 chr11 6243284 6243312 -115600544 + (CATATA)n Simple_repeat Simple_repeat 1 28 0 5 632 893 192 77 15 chr11 6243727 6243923 -115599933 + B3 SINE B2 2 209 -7 5 632 470 214 53 18 chr11 6243988 6244102 -115599754 + B4 SINE B4 171 288 -4 5 632 213 39 0 0 chr11 6244313 6244339 -115599517 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 5 632 628 214 8 0 chr11 6244373 6244504 -115599352 - B1_Mur1 SINE Alu -16 133 2 5 632 545 278 50 7 chr11 6244784 6244987 -115598869 + B3A SINE B2 1 216 0 5 632 408 294 55 11 chr11 6245055 6245237 -115598619 - L1M3 LINE L1 -369 5814 5625 5 632 241 282 118 0 chr11 6245327 6245412 -115598444 - B1_Mm SINE Alu -23 124 30 5 632 885 158 29 0 chr11 6245462 6245601 -115598255 + B1_Mur1 SINE Alu 1 143 -6 5 632 308 256 503 0 chr11 6245626 6245763 -115598093 + B4A SINE B4 1 206 -86 5 632 198 0 0 0 chr11 6245865 6245887 -115597969 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 5 632 318 26 0 0 chr11 6245894 6245933 -115597923 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 632 1166 65 0 0 chr11 6245933 6246071 -115597785 - B1_Mus1 SINE Alu -9 139 2 5 632 292 243 129 0 chr11 6246097 6246167 -115597689 - ID_B1 SINE B4 -123 101 23 5 632 252 0 0 0 chr11 6250122 6250150 -115593706 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 632 1190 74 92 6 chr11 6250151 6250315 -115593541 - B2_Mm2 SINE B2 -15 180 3 5 632 1159 68 0 0 chr11 6251208 6251355 -115592501 + B1_Mus2 SINE Alu 1 147 0 5 632 830 63 8 0 chr11 6251356 6251482 -115592374 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 5 632 860 164 20 0 chr11 6252356 6252502 -115591354 + B1_Mur1 SINE Alu 1 149 0 5 632 1729 26 0 0 chr11 6252809 6253002 -115590854 - B2_Mm1a SINE B2 0 193 1 5 632 1098 84 7 0 chr11 6253055 6253197 -115590659 + B1_Mus1 SINE Alu 1 143 -5 5 632 36 23 0 0 chr11 6253199 6253242 -115590614 + AT_rich Low_complexity Low_complexity 1 43 0 5 632 379 316 109 36 chr11 6253713 6253933 -115589923 - L1MB2 LINE L1 -270 5901 5666 5 632 1222 41 7 0 chr11 6253939 6254085 -115589771 + B1_Mus2 SINE Alu 1 147 0 5 632 634 207 169 22 chr11 6254121 6254304 -115589552 - B3 SINE B2 -5 211 2 5 632 719 178 197 75 chr11 6254341 6254529 -115589327 - B3 SINE B2 -5 211 1 5 632 618 231 20 20 chr11 6254615 6254761 -115589095 - B1_Mur1 SINE Alu 0 149 4 5 632 335 235 84 92 chr11 6254645 6254776 -115589080 - MT2B LTR ERVL -323 278 149 5 632 275 326 137 44 chr11 6257522 6257792 -115586064 - Lx8 LINE L1 -336 7137 6843 5 632 789 110 17 8 chr11 6257792 6257911 -115585945 + PB1D9 SINE Alu 1 120 0 5 632 227 283 91 82 chr11 6257916 6257997 -115585859 - Lx8 LINE L1 -616 6857 6781 5 632 1335 35 95 28 chr11 6257997 6258176 -115585680 + B2_Mm1t SINE B2 2 192 -1 5 632 227 283 91 82 chr11 6258176 6258302 -115585554 - Lx8 LINE L1 -693 6780 6648 5 632 1710 16 0 5 chr11 6258499 6258692 -115585164 + B2_Mm1a SINE B2 2 193 0 5 632 230 188 42 0 chr11 6258765 6258813 -115585043 - Lx6 LINE L1 -1569 5891 5842 5 632 236 236 0 102 chr11 6258796 6258914 -115584942 + Lx4B LINE L1 6949 7054 -4 5 632 972 120 127 0 chr11 6258931 6259089 -115584767 + B2_Mm1t SINE B2 2 179 -14 5 632 281 108 537 21 chr11 6259139 6259234 -115584622 + B2_Mm2 SINE B2 47 190 -5 5 632 1184 75 0 0 chr11 6259236 6259383 -115584473 + B1_Mm SINE Alu 1 147 0 5 632 380 245 23 94 chr11 6259385 6259556 -115584300 + B2_Mm2 SINE B2 33 191 -4 5 632 623 247 79 18 chr11 6259545 6259710 -115584146 - MTD LTR MaLR -155 264 90 5 632 1690 168 156 6 chr11 6259714 6260073 -115583783 - MTC LTR MaLR -8 413 1 5 632 283 338 75 0 chr11 6260144 6260277 -115583579 - Lx7 LINE L1 -1924 5772 5630 5 632 877 209 22 11 chr11 6260307 6260486 -115583370 - B2_Mm2 SINE B2 -14 181 1 5 632 980 257 65 143 chr11 6260623 6261132 -115582724 + RLTR12B LTR ERVK 17 485 -43 5 632 293 274 80 13 chr11 6261222 6261253 -115582603 - L1M3 LINE L1 -683 5497 5461 5 632 994 116 7 26 chr11 6261253 6261404 -115582452 - B1_Mus1 SINE Alu 0 148 1 5 632 964 162 82 16 chr11 6261410 6261604 -115582252 - B3 SINE B2 -9 207 1 5 632 647 232 51 6 chr11 6261604 6261829 -115582027 - Lx6 LINE L1 -464 5416 5141 5 632 332 335 112 0 chr11 6261841 6261993 -115581863 - B4 SINE B4 -123 169 1 5 632 378 0 0 0 chr11 6262049 6262091 -115581765 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 5 632 1256 28 0 0 chr11 6262091 6262235 -115581621 - B1_Mus2 SINE Alu -3 144 1 5 632 2083 202 74 45 chr11 6262238 6262958 -115580898 - RMER19B LTR ERVK -20 882 1 5 632 857 157 36 0 chr11 6263001 6263141 -115580715 - ORR1C2 LTR MaLR -3 381 237 5 632 1555 146 162 38 chr11 6263150 6263521 -115580335 + RMER10A LTR ERVL 1 417 -25 5 632 324 0 0 0 chr11 6264245 6264281 -115579575 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 5 632 283 224 11 56 chr11 6264289 6264379 -115579477 + RLTR19-int LTR ERVK 883 968 -5169 5 632 1603 27 11 0 chr11 6264380 6264565 -115579291 + B2_Mm1a SINE B2 2 188 -5 5 632 821 143 162 0 chr11 6264658 6264812 -115579044 - ORR1C2 LTR MaLR -204 180 2 5 632 1830 119 178 13 chr11 6264892 6265207 -115578649 - ORR1B2 LTR MaLR 0 367 1 5 632 1111 136 131 0 chr11 6265566 6265757 -115578099 + B3 SINE B2 1 216 0 5 632 1080 95 0 20 chr11 6265793 6265943 -115577913 + B1_Mus1 SINE Alu 2 148 0 5 632 307 302 105 66 chr11 6266342 6266523 -115577333 + B3 SINE B2 2 189 -6 5 632 1785 134 54 169 chr11 6266785 6267270 -115576586 - RLTR23 LTR ERV1 -1 429 1 5 632 229 292 69 0 chr11 6267396 6267468 -115576388 + Charlie1 DNA MER1_type 37 113 -2668 5 632 568 181 108 16 chr11 6267790 6267919 -115575937 + B1_Mus1 SINE Alu 2 142 -6 5 632 188 163 0 23 chr11 6267919 6267955 -115575901 + GA-rich Low_complexity Low_complexity 1 36 0 5 632 2681 82 46 10 chr11 6267955 6268350 -115575506 - RLTR9E LTR ERVK 0 409 1 5 632 237 258 79 0 chr11 6268359 6268448 -115575408 + Charlie1 DNA MER1_type 1894 1989 -792 5 632 1140 69 14 0 chr11 6268449 6268593 -115575263 + B1_Mur4 SINE Alu 5 150 0 5 632 1653 26 11 0 chr11 6268695 6268886 -115574970 - B2_Mm1a SINE B2 0 193 1 5 632 630 202 18 0 chr11 6268990 6269104 -115574752 + B3 SINE B2 2 117 -99 5 632 642 267 7 7 chr11 6269113 6269260 -115574596 + B1_Mur2 SINE Alu 3 149 0 5 632 360 200 121 11 chr11 6269411 6269502 -115574354 - PB1D9 SINE Alu 0 120 20 5 632 326 296 53 101 chr11 6269433 6269621 -115574235 - MT2B LTR ERVL -350 251 73 5 632 519 262 167 0 chr11 6269586 6269712 -115574144 - MTE2b LTR MaLR -65 314 168 5 632 640 239 23 0 chr11 6269712 6269842 -115574014 - B1_Mur1 SINE Alu -16 133 1 5 632 216 0 0 0 chr11 6269899 6269923 -115573933 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 632 452 294 62 26 chr11 6269924 6270116 -115573740 - B4A SINE B4 -18 274 76 5 632 240 262 50 69 chr11 6270417 6270561 -115573295 - B4 SINE B4 -146 146 2 5 632 239 183 16 62 chr11 6270831 6270895 -115572961 + RLTR20B1 LTR ERVK 109 169 -394 5 632 317 290 13 6 chr11 6271135 6271227 -115572629 - MTE2b LTR MaLR -289 90 1 5 632 233 186 11 214 chr11 6271380 6271469 -115572387 - RSINE1 SINE B4 -1 164 94 5 632 186 43 0 0 chr11 6271542 6271565 -115572291 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 632 378 283 55 8 chr11 6271575 6271703 -115572153 - L1MD LINE L1 -1141 5005 4872 5 632 253 288 98 33 chr11 6271841 6271963 -115571893 + RLTR12B LTR ERVK 121 250 -278 5 632 270 321 25 13 chr11 6272247 6272326 -115571530 + PB1D7 SINE Alu 3 82 -38 5 632 342 70 0 0 chr11 6272324 6272367 -115571489 - PB1D9 SINE Alu -77 43 1 5 632 306 167 19 0 chr11 6272367 6272378 -115571478 - B4A SINE B4 -164 128 74 5 632 386 296 23 53 chr11 6272443 6272575 -115571281 + MLT1A1 LTR MaLR 1 128 -280 5 632 447 311 18 0 chr11 6272931 6273098 -115570758 + L1MC LINE L1 5431 5600 -733 5 632 371 308 16 41 chr11 6273098 6273220 -115570636 - RLTR18 LTR ERVK 0 616 498 5 632 1353 205 24 0 chr11 6273218 6273467 -115570389 - RLTR18 LTR ERVK -359 257 3 5 632 1103 73 0 0 chr11 6273479 6273615 -115570241 + B1_Mus1 SINE Alu 1 136 -12 5 632 522 0 0 0 chr11 6273615 6273673 -115570183 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 5 632 474 238 57 16 chr11 6273873 6273995 -115569861 - RSINE1 SINE B4 -17 148 22 5 632 1946 94 68 29 chr11 6273995 6274258 -115569598 + ORR1A2 LTR MaLR 1 284 -43 5 632 1208 145 0 5 chr11 6274258 6274452 -115569404 + B2_Mm2 SINE B2 2 194 -1 5 632 1946 94 68 29 chr11 6274452 6274495 -115569361 + ORR1A2 LTR MaLR 285 319 -8 5 632 23 0 0 0 chr11 6274548 6274571 -115569285 + AT_rich Low_complexity Low_complexity 1 23 0 5 632 665 182 103 0 chr11 6274586 6274712 -115569144 - B1_Mm SINE Alu -1 146 8 5 632 566 150 58 91 chr11 6274723 6274877 -115568979 - B1_Mur2 SINE Alu 0 149 1 5 632 443 261 75 92 chr11 6274877 6275050 -115568806 - B3A SINE B2 -3 195 26 5 632 1157 68 7 0 chr11 6275082 6275228 -115568628 - B1_Mus1 SINE Alu 0 148 2 5 632 423 150 100 0 chr11 6275244 6275324 -115568532 - B3 SINE B2 -3 213 126 5 632 396 0 0 0 chr11 6275336 6275380 -115568476 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 632 249 33 0 0 chr11 6275380 6275409 -115568447 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 632 814 108 8 8 chr11 6275558 6275679 -115568177 + B1_Mur4 SINE Alu 28 148 -2 6 632 974 121 5 94 chr11 6275679 6275852 -115568004 + B2_Mm1t SINE B2 2 159 -34 6 632 1132 95 0 22 chr11 6275852 6276035 -115567821 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 6 632 974 121 5 94 chr11 6276035 6276053 -115567803 + B2_Mm1t SINE B2 160 176 -17 6 632 1073 82 0 0 chr11 6276155 6276290 -115567566 + B1_Mus2 SINE Alu 1 135 -12 6 632 261 0 0 0 chr11 6276293 6276322 -115567534 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 632 225 308 99 116 chr11 6277330 6277572 -115566284 - RMER21B LTR ERV1 -65 777 540 6 632 263 252 86 31 chr11 6277519 6277602 -115566254 - PB1 SINE Alu -8 119 40 6 632 5194 55 23 9 chr11 6277602 6278267 -115565589 - L1Md_F2 LINE L1 -1 6581 5908 6 632 402 228 0 61 chr11 6278305 6278403 -115565453 - PB1D10 SINE Alu 0 117 26 6 632 1050 61 0 0 chr11 6278461 6278593 -115565263 - B1_Mus1 SINE Alu -15 133 2 6 632 1229 91 23 0 chr11 6278784 6278960 -115564896 + B2_Mm2 SINE B2 2 181 -14 6 632 365 0 22 0 chr11 6278960 6279005 -115564851 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 632 378 296 6 56 chr11 6279226 6279241 -115564615 + ID SINE ID 72 86 -138 6 632 210 37 0 0 chr11 6279241 6279268 -115564588 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 632 737 164 0 36 chr11 6279274 6279413 -115564443 + B1_Mus2 SINE Alu 12 145 -2 6 632 945 62 101 0 chr11 6279461 6279590 -115564266 + B1_Mus1 SINE Alu 2 143 -5 6 632 253 189 0 86 chr11 6279610 6279668 -115564188 - PB1D10 SINE Alu -17 100 48 6 632 341 265 15 0 chr11 6279669 6279737 -115564119 - L1MEg LINE L1 -4134 1950 1882 6 632 1183 48 0 0 chr11 6279737 6279884 -115563972 - B1_Mus2 SINE Alu 0 147 1 6 632 764 126 14 62 chr11 6279888 6280032 -115563824 - B1_Mur2 SINE Alu -2 147 11 6 632 825 179 34 17 chr11 6280234 6280410 -115563446 + B3 SINE B2 35 213 -3 6 632 373 326 104 0 chr11 6280428 6280563 -115563293 + RSINE1 SINE B4 4 152 -13 6 632 1307 60 11 32 chr11 6280626 6280814 -115563042 - B2_Mm1t SINE B2 -8 185 2 6 632 689 227 15 0 chr11 6281307 6281439 -115562417 - B1_Mur2 SINE Alu -15 134 1 6 632 630 231 115 62 chr11 6281602 6281810 -115562046 + ID_B1 SINE B4 2 220 -4 6 632 180 0 0 0 chr11 6281823 6281843 -115562013 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 632 231 159 0 0 chr11 6281842 6281860 -115561996 + polypurine Low_complexity Low_complexity 2 19 0 6 632 1134 75 0 0 chr11 6281860 6282006 -115561850 + B1_Mus2 SINE Alu 2 147 0 6 632 231 159 0 0 chr11 6282006 6282031 -115561825 + polypurine Low_complexity Low_complexity 20 44 0 6 632 534 48 0 0 chr11 6282323 6282407 -115561449 - L1Md_F3 LINE L1 0 6584 6501 6 632 31224 40 25 9 chr11 6282614 6285053 -115558803 + MERVL-int LTR ERVL 984 3447 -2038 6 632 1605 31 0 0 chr11 6285053 6285244 -115558612 - B2_Mm1a SINE B2 -2 191 1 6 632 31224 40 25 9 chr11 6285244 6286716 -115557140 + MERVL-int LTR ERVL 3448 4959 -526 6 632 1989 64 0 0 chr11 6286709 6286973 -115556883 + MERVL-int LTR ERVL 5111 5374 -111 6 632 953 97 0 7 chr11 6286988 6287134 -115556722 + MT2C_Mm LTR ERVL 331 475 0 6 632 290 250 0 0 chr11 6287213 6287285 -115556571 + L1MB3 LINE L1 5764 5835 -348 6 632 355 240 20 50 chr11 6287290 6287391 -115556465 + PB1D10 SINE Alu 10 107 -10 6 632 300 235 139 0 chr11 6287404 6287519 -115556337 + L1MB3 LINE L1 5821 5951 -232 6 632 874 157 84 26 chr11 6287573 6287763 -115556093 + URR1A DNA MER1_type 17 217 -9 6 632 465 262 101 62 chr11 6287987 6288166 -115555690 - RMER30 DNA MER1_type -7 195 10 6 632 31 26 0 0 chr11 6288415 6288453 -115555403 + AT_rich Low_complexity Low_complexity 1 38 0 6 632 277 77 0 0 chr11 6288512 6288551 -115555305 - B2_Mm2 SINE B2 -155 40 2 6 632 321 174 0 0 chr11 6288569 6288638 -115555218 + T-rich Low_complexity Low_complexity 1 69 0 6 632 1140 62 0 0 chr11 6288645 6288790 -115555066 - B1_Mus2 SINE Alu -2 145 1 6 632 203 205 49 37 chr11 6289011 6289092 -115554764 + (CCCCAG)n Simple_repeat Simple_repeat 3 84 0 6 632 215 194 14 43 chr11 6289204 6289274 -115554582 + (CCCGG)n Simple_repeat Simple_repeat 2 69 0 6 632 26 0 0 0 chr11 6289314 6289340 -115554516 + GC_rich Low_complexity Low_complexity 1 26 0 6 632 265 250 11 54 chr11 6289389 6289492 -115554364 + (CGG)n Simple_repeat Simple_repeat 3 102 0 6 632 180 0 0 0 chr11 6289492 6289512 -115554344 + (CCGGG)n Simple_repeat Simple_repeat 2 21 0 6 632 265 250 11 54 chr11 6289512 6289594 -115554262 + (CGG)n Simple_repeat Simple_repeat 1 77 0 6 632 336 253 9 26 chr11 6290842 6290940 -115552916 - PB1 SINE Alu -51 98 5 6 632 227 152 22 0 chr11 6290979 6291025 -115552831 + CT-rich Low_complexity Low_complexity 2 48 0 6 632 884 93 79 0 chr11 6291025 6291164 -115552692 - B1_Mur4 SINE Alu 0 150 1 6 633 397 261 8 17 chr11 6292143 6292260 -115551596 - PB1D10 SINE Alu -1 116 1 6 633 458 260 0 9 chr11 6292261 6292366 -115551490 - ID_B1 SINE B4 -40 184 81 6 633 1753 249 162 50 chr11 6292369 6293221 -115550635 - L1MD1 LINE L1 -9 6233 5295 6 633 824 153 44 0 chr11 6293221 6293358 -115550498 + B1_Mur4 SINE Alu 1 143 -7 6 633 582 255 123 68 chr11 6293358 6293660 -115550196 - L1MD1 LINE L1 -852 5294 4967 6 633 261 278 0 100 chr11 6293671 6293751 -115550105 - ID2 SINE ID -2 81 10 6 633 241 234 153 23 chr11 6293790 6293921 -115549935 - L1MD1 LINE L1 -1199 4947 4800 6 633 222 37 0 0 chr11 6294944 6294971 -115548885 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 633 393 149 0 0 chr11 6294985 6295052 -115548804 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 633 21 0 0 0 chr11 6296575 6296596 -115547260 + AT_rich Low_complexity Low_complexity 1 21 0 6 633 1426 77 0 5 chr11 6298888 6299084 -115544772 + B2_Mm2 SINE B2 1 195 0 6 633 875 65 48 0 chr11 6300103 6300227 -115543629 + B1_Mm SINE Alu 18 147 0 6 633 216 158 0 0 chr11 6300227 6300265 -115543591 + A-rich Low_complexity Low_complexity 1 38 0 6 633 254 286 191 0 chr11 6301591 6301675 -115542181 + PB1D10 SINE Alu 7 106 -11 6 633 407 307 58 0 chr11 6301682 6301819 -115542037 - ID_B1 SINE B4 0 224 80 6 633 483 250 22 16 chr11 6301963 6302105 -115541751 - B1_Mur2 SINE Alu -5 142 2 6 633 334 75 19 0 chr11 6302194 6302247 -115541609 + B1_Mus1 SINE Alu 2 55 -93 6 633 279 117 66 16 chr11 6302195 6302256 -115541600 + ID_B1 SINE B4 84 147 -77 6 633 205 156 0 0 chr11 6302256 6302288 -115541568 + GA-rich Low_complexity Low_complexity 2 33 0 6 633 261 156 197 46 chr11 6307301 6307391 -115536465 - PB1D7 SINE Alu -8 112 11 6 633 586 225 54 0 chr11 6307489 6307618 -115536238 - B1_Mur2 SINE Alu -8 141 6 6 633 1038 97 0 0 chr11 6307662 6307807 -115536049 - B1_Mus1 SINE Alu -2 146 2 6 633 556 248 89 25 chr11 6307823 6307980 -115535876 + B3 SINE B2 50 216 0 6 633 250 172 118 59 chr11 6307972 6308040 -115535816 + B1_Mur4 SINE Alu 68 139 -11 6 633 387 250 45 0 chr11 6308152 6308240 -115535616 + B3A SINE B2 1 92 -106 6 633 801 120 59 15 chr11 6308253 6308388 -115535468 - B1_Mur3 SINE Alu 0 149 9 6 633 1120 68 7 0 chr11 6308701 6308848 -115535008 + B1_Mus1 SINE Alu 1 148 0 6 633 337 279 122 37 chr11 6308867 6309031 -115534825 + L1M4 LINE L1 3355 3532 -2614 6 633 399 307 115 16 chr11 6309339 6309531 -115534325 - RLTR12B LTR ERVK -270 258 48 6 633 793 131 0 0 chr11 6309978 6310100 -115533756 - B1_Mur4 SINE Alu -7 143 22 6 633 230 273 0 0 chr11 6310294 6310349 -115533507 + G-rich Low_complexity Low_complexity 1 55 0 6 633 344 40 100 0 chr11 6310557 6310607 -115533249 + ORR1A3 LTR MaLR 272 326 0 6 633 262 200 0 104 chr11 6310614 6310681 -115533175 + MTD LTR MaLR 326 385 -34 6 633 333 0 0 0 chr11 6310687 6310724 -115533132 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 633 1096 55 0 40 chr11 6310724 6310738 -115533118 - B1_Mus2 SINE Alu 0 147 139 6 633 198 0 0 0 chr11 6310738 6310760 -115533096 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 6 633 1096 55 0 40 chr11 6310760 6310896 -115532960 - B1_Mus2 SINE Alu -9 138 3 6 633 232 154 0 0 chr11 6310896 6310935 -115532921 + ORR1D2 LTR MaLR 327 365 -5 6 633 279 0 0 0 chr11 6311093 6311124 -115532732 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 633 1131 62 0 0 chr11 6311126 6311272 -115532584 - B1_Mus1 SINE Alu -1 147 2 6 633 551 181 181 0 chr11 6311399 6311515 -115532341 + B1_Mur3 SINE Alu 2 138 -11 6 633 261 275 37 12 chr11 6311921 6312002 -115531854 + MER45A DNA Tip100 49 131 -47 6 633 237 250 43 29 chr11 6312175 6312245 -115531611 - MLT1K LTR MaLR -280 315 245 6 633 1188 41 7 0 chr11 6312258 6312404 -115531452 - B1_Mus2 SINE Alu 0 147 1 6 633 404 243 99 0 chr11 6312590 6312701 -115531155 + B1F1 SINE Alu 9 130 -19 6 633 244 292 0 30 chr11 6312718 6312817 -115531039 - L1MCc LINE L1 -5132 1291 1196 6 633 319 179 97 18 chr11 6313127 6313292 -115530564 + (GCTG)n Simple_repeat Simple_repeat 1 178 0 6 633 235 212 85 24 chr11 6313305 6313469 -115530387 + (GCTG)n Simple_repeat Simple_repeat 1 174 0 6 633 407 273 45 0 chr11 6313663 6313773 -115530083 + ID_B1 SINE B4 1 115 -109 6 633 1268 90 6 6 chr11 6313833 6314012 -115529844 - B2_Mm1t SINE B2 -14 179 1 6 633 321 89 0 0 chr11 6314110 6314155 -115529701 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 633 390 237 0 0 chr11 6314155 6314231 -115529625 - RSINE1 SINE B4 -40 125 50 6 633 216 340 10 40 chr11 6314261 6314362 -115529494 - PB1D7 SINE Alu -21 99 2 6 633 216 328 169 16 chr11 6314362 6314427 -115529429 - B4A SINE B4 -207 85 2 7 633 357 300 9 18 chr11 6314441 6314553 -115529303 + L1M4 LINE L1 5219 5329 -817 7 633 355 218 26 52 chr11 6314643 6314759 -115529097 - B4A SINE B4 -155 137 25 7 633 347 235 30 20 chr11 6315009 6315109 -115528747 - PB1D10 SINE Alu -1 116 16 7 633 28 48 0 0 chr11 6315704 6315746 -115528110 + GC_rich Low_complexity Low_complexity 1 42 0 7 633 1157 34 0 7 chr11 6316892 6317040 -115526816 + B1_Mus2 SINE Alu 1 147 0 7 633 1105 119 48 5 chr11 6318349 6318535 -115525321 - B2_Mm2 SINE B2 0 195 2 7 633 272 274 41 0 chr11 6318711 6318784 -115525072 - PB1D10 SINE Alu -24 93 18 7 633 227 310 83 94 chr11 6318837 6318933 -115524923 + B4A SINE B4 26 120 -172 7 633 281 200 310 0 chr11 6320278 6320378 -115523478 + B3 SINE B2 65 195 -21 7 633 224 303 61 0 chr11 6320439 6320505 -115523351 - B3A SINE B2 -89 109 40 7 633 556 249 118 53 chr11 6320757 6321020 -115522836 + MTD LTR MaLR 8 287 -132 7 633 566 239 67 47 chr11 6321057 6321250 -115522606 - B3A SINE B2 -1 197 1 7 633 371 198 80 74 chr11 6321290 6321410 -115522446 + PB1D9 SINE Alu 1 117 -3 7 633 234 0 0 0 chr11 6321542 6321568 -115522288 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 633 1306 49 60 5 chr11 6321568 6321746 -115522110 - B2_Mm2 SINE B2 -5 190 2 7 633 768 103 119 0 chr11 6321774 6321900 -115521956 - B1_Mus1 SINE Alu -6 142 2 7 633 244 280 67 0 chr11 6322380 6322455 -115521401 - B3A SINE B2 -118 80 1 7 633 609 223 233 6 chr11 6323566 6323742 -115520114 + B3 SINE B2 1 216 0 7 633 822 142 6 51 chr11 6323830 6323986 -115519870 - B1_Mur2 SINE Alu 0 149 1 7 633 1000 124 47 42 chr11 6324239 6324269 -115519587 - B2_Mm2 SINE B2 0 195 169 7 633 1323 96 5 0 chr11 6324269 6324457 -115519399 + B2_Mm1a SINE B2 2 190 -3 7 633 1000 124 47 42 chr11 6324457 6324619 -115519237 - B2_Mm2 SINE B2 -27 168 2 7 633 207 0 0 0 chr11 6324622 6324645 -115519211 + (T)n Simple_repeat Simple_repeat 1 23 0 7 633 1137 61 0 0 chr11 6324645 6324792 -115519064 - B1_Mus2 SINE Alu 0 147 1 7 633 626 193 56 14 chr11 6324796 6324938 -115518918 - B1_Mur1 SINE Alu 0 149 2 7 633 511 287 49 0 chr11 6324969 6325112 -115518744 - B3A SINE B2 -22 176 27 7 633 491 219 131 15 chr11 6325114 6325244 -115518612 - B1_Mur3 SINE Alu -2 147 3 7 633 589 224 137 16 chr11 6325276 6325458 -115518398 - B3 SINE B2 -10 206 3 7 633 380 267 23 0 chr11 6325522 6325608 -115518248 + B4A SINE B4 1 88 -204 7 633 391 310 32 6 chr11 6325614 6325770 -115518086 + RSINE1 SINE B4 1 160 -5 7 633 1631 26 0 0 chr11 6325799 6325991 -115517865 + B2_Mm1a SINE B2 1 192 -1 7 633 23 0 0 0 chr11 6325991 6326014 -115517842 + AT_rich Low_complexity Low_complexity 1 23 0 7 633 368 351 9 17 chr11 6326014 6326130 -115517726 + B4 SINE B4 80 194 -98 7 633 676 215 150 6 chr11 6326299 6326472 -115517384 + B3 SINE B2 2 199 -17 7 633 1003 79 36 0 chr11 6326473 6326605 -115517251 + B1_Mm SINE Alu 2 138 -9 7 633 207 0 0 0 chr11 6326605 6326628 -115517228 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 7 633 966 73 14 0 chr11 6326643 6326790 -115517066 - B2_Mm2 SINE B2 -52 164 2 7 633 1089 128 23 0 chr11 6326863 6327035 -115516821 + B2_Mm2 SINE B2 2 177 -18 7 633 306 0 0 0 chr11 6327036 6327070 -115516786 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 7 633 687 199 81 12 chr11 6327689 6327862 -115515994 + B2_Mm2 SINE B2 2 186 -9 7 633 408 252 0 48 chr11 6329396 6329500 -115514356 - PB1D10 SINE Alu -16 101 3 7 633 992 90 116 35 chr11 6329636 6329808 -115514048 - B2_Mm2 SINE B2 -9 186 1 7 633 351 60 328 0 chr11 6329819 6329886 -115513970 - BC1_Mm scRNA scRNA -62 90 2 7 633 659 250 82 39 chr11 6330022 6330230 -115513626 - ID_B1 SINE B4 0 224 8 7 633 503 155 25 11 chr11 6330756 6330869 -115512987 - B1_Mus1 SINE Alu 0 120 7 7 633 180 77 0 0 chr11 6330906 6330932 -115512924 + (T)n Simple_repeat Simple_repeat 1 26 0 7 633 1077 62 7 20 chr11 6330932 6331080 -115512776 - B1_Mus2 SINE Alu 0 147 2 7 633 1091 88 0 0 chr11 6331392 6331539 -115512317 + B1_Mus2 SINE Alu 1 147 0 7 633 184 0 30 61 chr11 6331539 6331572 -115512284 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 7 633 341 281 56 40 chr11 6331699 6331825 -115512031 + B3 SINE B2 65 192 -24 7 633 250 286 65 0 chr11 6331846 6331923 -115511933 + ID4_ SINE ID 2 83 0 7 633 718 177 6 104 chr11 6332380 6332544 -115511312 + B1_Mus1 SINE Alu 1 148 0 7 633 445 255 45 9 chr11 6332663 6332774 -115511082 - PB1D10 SINE Alu -1 116 2 7 633 456 279 208 0 chr11 6332853 6333036 -115510820 - ID_B1 SINE B4 -2 222 2 7 633 351 286 86 16 chr11 6333338 6333466 -115510390 + ID_B1 SINE B4 88 224 0 7 633 1214 54 14 0 chr11 6333470 6333617 -115510239 + B1_Mur4 SINE Alu 2 150 0 7 633 313 144 124 72 chr11 6334459 6334556 -115509300 - B1_Mur4 SINE Alu 0 150 49 7 633 248 286 35 35 chr11 6335381 6335468 -115508388 - PB1D7 SINE Alu -19 98 12 7 633 608 172 13 50 chr11 6335502 6335524 -115508332 + ID_B1 SINE B4 70 222 -2 7 633 1092 22 0 0 chr11 6335524 6335661 -115508195 + B1_Mus2 SINE Alu 9 145 -2 7 633 726 60 0 0 chr11 6335671 6335771 -115508085 + (GAAA)n Simple_repeat Simple_repeat 4 103 0 7 633 349 244 49 0 chr11 6335784 6335866 -115507990 - B1F SINE Alu -33 116 31 7 633 918 44 110 0 chr11 6335878 6336014 -115507842 - B2_Mm2 SINE B2 -43 152 2 7 633 651 226 179 16 chr11 6336014 6336198 -115507658 - B3 SINE B2 -2 214 1 7 633 605 206 12 121 chr11 6336222 6336249 -115507607 - B1_Mus1 SINE Alu 0 148 124 7 633 1245 106 16 21 chr11 6336249 6336441 -115507415 - B2_Mm2 SINE B2 0 195 5 7 633 605 206 12 121 chr11 6336441 6336579 -115507277 - B1_Mus1 SINE Alu -25 123 1 7 633 252 289 44 11 chr11 6336579 6336667 -115507189 - B3A SINE B2 -35 181 93 7 633 395 231 37 97 chr11 6336718 6336852 -115507004 + B1_Mm SINE Alu 15 140 -7 7 633 240 219 38 76 chr11 6336882 6336961 -115506895 - B3A SINE B2 -121 77 2 7 633 268 246 0 0 chr11 6336976 6337033 -115506823 - RSINE1 SINE B4 -43 122 66 7 633 570 246 189 6 chr11 6337229 6337409 -115506447 + B3 SINE B2 3 215 -1 7 633 1194 48 0 0 chr11 6337530 6337677 -115506179 + B1_Mus2 SINE Alu 1 147 0 7 633 432 51 0 0 chr11 6337726 6337785 -115506071 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 633 993 207 59 0 chr11 6337891 6338094 -115505762 + B3 SINE B2 1 215 -1 7 633 207 100 0 0 chr11 6338119 6338149 -115505707 + (A)n Simple_repeat Simple_repeat 1 30 0 7 633 949 241 15 0 chr11 6338153 6338356 -115505500 - B3 SINE B2 -10 206 1 7 633 615 98 0 0 chr11 6338372 6338464 -115505392 - L1Md_A LINE L1 -1 6581 6490 7 633 364 290 128 8 chr11 6338793 6338918 -115504938 - B3A SINE B2 -23 175 36 7 633 21 36 0 0 chr11 6338921 6338949 -115504907 + AT_rich Low_complexity Low_complexity 1 28 0 7 633 646 118 25 9 chr11 6338972 6339093 -115504763 - B1_Mur3 SINE Alu -13 137 3 7 633 905 89 0 0 chr11 6339710 6339834 -115504022 - B1_Mur4 SINE Alu -3 147 24 7 633 725 50 20 0 chr11 6339834 6339934 -115503922 + L1Md_A LINE L1 6481 6582 0 7 633 582 39 0 0 chr11 6339976 6340054 -115503802 - L1Md_T LINE L1 0 6582 6505 7 633 388 238 112 10 chr11 6340176 6340315 -115503541 + L1M3 LINE L1 5600 5748 -423 7 633 284 277 60 0 chr11 6340530 6340613 -115503243 + MTEa LTR MaLR 290 377 -2 7 633 1151 68 0 13 chr11 6340625 6340774 -115503082 + B1_Mus2 SINE Alu 1 147 0 7 633 270 81 0 0 chr11 6340774 6340811 -115503045 + (A)n Simple_repeat Simple_repeat 1 37 0 7 633 866 300 49 63 chr11 6340811 6341241 -115502615 + MTE-int LTR MaLR 1 424 -1156 7 633 30 0 0 0 chr11 6341272 6341302 -115502554 + AT_rich Low_complexity Low_complexity 1 30 0 7 633 601 238 174 0 chr11 6341314 6341486 -115502370 - B3 SINE B2 -10 206 5 7 633 21 0 0 0 chr11 6341539 6341560 -115502296 + AT_rich Low_complexity Low_complexity 1 21 0 7 633 253 255 181 0 chr11 6341626 6341720 -115502136 + B1F SINE Alu 3 113 -36 7 633 431 303 69 0 chr11 6341970 6342115 -115501741 + RSINE1 SINE B4 11 165 0 7 633 982 40 0 0 chr11 6342316 6342441 -115501415 - B1_Mus1 SINE Alu 0 148 24 7 633 1125 29 49 14 chr11 6342885 6343027 -115500829 + B1_Mm SINE Alu 1 147 0 7 633 312 91 0 0 chr11 6343031 6343075 -115500781 + (A)n Simple_repeat Simple_repeat 1 44 0 7 633 202 189 0 54 chr11 6344361 6344417 -115499439 + (CCG)n Simple_repeat Simple_repeat 2 54 0 7 633 180 0 0 0 chr11 6345502 6345522 -115498334 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 7 633 812 125 0 15 chr11 6345522 6345652 -115498204 + B1_Mus2 SINE Alu 19 146 -1 7 633 985 122 110 6 chr11 6345655 6345828 -115498028 + B2_Mm2 SINE B2 1 191 -4 7 633 275 219 26 52 chr11 6346650 6346727 -115497129 + PB1D10 SINE Alu 43 117 0 7 633 184 342 53 0 chr11 6346933 6347009 -115496847 + MIRc SINE MIR 45 124 -144 7 633 416 309 7 35 chr11 6347109 6347253 -115496603 - B4A SINE B4 -17 275 136 8 633 231 291 24 48 chr11 6347810 6347893 -115495963 - B1F SINE Alu -11 138 58 8 633 662 269 64 15 chr11 6347945 6348209 -115495647 + L1M4 LINE L1 4615 4891 -1255 8 633 362 265 19 10 chr11 6348277 6348376 -115495480 + B3 SINE B2 63 162 -54 8 633 319 47 0 0 chr11 6348376 6348419 -115495437 + RLTR10B LTR ERVK 1 43 -249 8 633 2054 25 0 118 chr11 6348440 6348762 -115495094 + RLTR10B LTR ERVK 9 292 0 8 633 2127 57 11 4 chr11 6348762 6349027 -115494829 + MMERVK10C-int LTR ERVK 1 267 -7314 8 633 248 103 56 42 chr11 6349103 6349174 -115494682 + GA-rich Low_complexity Low_complexity 3 74 0 8 633 351 45 0 43 chr11 6349174 6349221 -115494635 + MMERVK10C-int LTR ERVK 93 137 -6405 8 633 2178 31 4 0 chr11 6349224 6349483 -115494373 + MMERVK10C-int LTR ERVK 652 911 -1076 8 633 432 294 41 41 chr11 6349483 6349703 -115494153 + MMERVK10C-int LTR ERVK 1347 1566 -6015 8 633 2763 107 7 19 chr11 6349703 6350124 -115493732 + MMERVK10C-int LTR ERVK 5001 5810 -1771 8 633 7641 45 0 51 chr11 6350115 6351063 -115492793 + MMERVK10C-int LTR ERVK 6651 7560 -21 8 633 1598 52 0 0 chr11 6351063 6351255 -115492601 - B2_Mm1t SINE B2 0 193 2 8 633 7641 45 0 51 chr11 6351255 6351287 -115492569 + MMERVK10C-int LTR ERVK 7561 7581 0 8 633 307 24 0 0 chr11 6351287 6351329 -115492527 + RLTR10B2 LTR ERVK 1 42 -250 8 633 1312 59 121 52 chr11 6351351 6351582 -115492274 + RLTR10B2 LTR ERVK 18 264 -101 8 633 3509 38 33 5 chr11 6351641 6352061 -115491795 - RLTR10C LTR ERVK 0 436 5 8 633 189 0 0 0 chr11 6352061 6352082 -115491774 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 633 27 62 0 0 chr11 6352106 6352154 -115491702 + AT_rich Low_complexity Low_complexity 1 48 0 8 633 585 299 34 6 chr11 6352288 6352466 -115491390 + B4A SINE B4 41 223 -69 8 633 357 216 113 56 chr11 6352467 6352609 -115491247 + Lx9 LINE L1 7495 7644 0 8 633 184 232 13 104 chr11 6352655 6352732 -115491124 + L2a LINE L2 3256 3325 -101 8 633 411 21 0 0 chr11 6352780 6352828 -115491028 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 633 486 141 0 12 chr11 6352929 6353015 -115490841 - RLTR12B LTR ERVK 0 528 444 8 633 399 115 0 0 chr11 6353015 6353076 -115490780 + L1_Mus1 LINE L1 6498 6558 -9 8 633 183 156 0 0 chr11 6354044 6354076 -115489780 + A-rich Low_complexity Low_complexity 4 35 0 8 633 687 213 68 16 chr11 6354087 6354271 -115489585 - RLTR12B LTR ERVK -51 477 284 8 633 1874 88 84 39 chr11 6354271 6354604 -115489252 - RLTR10B2 LTR ERVK 0 365 18 8 633 1176 184 82 25 chr11 6354699 6354944 -115488912 - RLTR12B LTR ERVK -230 298 40 8 633 1354 108 27 0 chr11 6355094 6355280 -115488576 + B2_Mm2 SINE B2 2 192 -3 8 633 1209 55 0 0 chr11 6355357 6355503 -115488353 + B1_Mus2 SINE Alu 2 147 0 8 633 225 0 0 0 chr11 6355503 6355528 -115488328 + (A)n Simple_repeat Simple_repeat 1 25 0 8 633 2609 171 170 80 chr11 6355938 6356739 -115487117 - RMER19B LTR ERVK -29 873 1 8 633 1066 117 76 0 chr11 6356752 6356923 -115486933 + B2_Mm1a SINE B2 2 185 -8 8 633 619 249 42 87 chr11 6357006 6357331 -115486525 + MYSERV-int LTR ERVK 4896 5032 -1518 8 633 327 250 15 0 chr11 6357298 6357366 -115486490 + MYSERV-int LTR ERVK 5287 5355 -425 8 633 1139 44 0 0 chr11 6357366 6357501 -115486355 + B1_Mm SINE Alu 1 135 -12 8 633 191 61 0 29 chr11 6357504 6357538 -115486318 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 8 633 309 26 0 0 chr11 6357545 6357583 -115486273 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 8 633 322 226 72 86 chr11 6357631 6357808 -115486048 + RMER4A LTR ERVK 255 536 -49 8 633 3381 213 31 104 chr11 6357820 6357958 -115485898 + MYSERV6-int LTR ERVK 7768 7901 -1058 8 633 1110 109 115 0 chr11 6357958 6358132 -115485724 - B2_Mm2 SINE B2 0 195 2 8 633 3381 213 31 104 chr11 6358132 6358511 -115485345 + MYSERV6-int LTR ERVK 7902 8257 -702 8 633 1328 83 38 27 chr11 6358511 6358688 -115485168 + B2_Mm2 SINE B2 2 181 -14 8 633 1154 75 0 0 chr11 6358688 6358835 -115485021 - B1_Mus2 SINE Alu 0 147 1 8 633 216 0 0 0 chr11 6358852 6358876 -115484980 + (TA)n Simple_repeat Simple_repeat 1 24 0 8 633 234 0 0 0 chr11 6358876 6358901 -115484955 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 633 3381 213 31 104 chr11 6358901 6359461 -115484395 + MYSERV6-int LTR ERVK 8261 8778 -181 8 633 187 54 26 26 chr11 6359518 6359556 -115484300 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 8 633 1124 55 0 64 chr11 6359556 6359712 -115484144 - B1_Mm SINE Alu 0 147 2 8 633 1105 72 0 0 chr11 6359825 6359963 -115483893 + B1_Mus2 SINE Alu 2 139 -8 8 633 532 205 5 170 chr11 6359984 6360051 -115483805 + MYSERV-int LTR ERVK 6389 6446 -104 8 633 1376 77 5 16 chr11 6360051 6360236 -115483620 - B2_Mm1t SINE B2 -9 184 2 8 633 532 205 5 170 chr11 6360236 6360362 -115483494 + MYSERV-int LTR ERVK 6447 6550 0 8 633 861 257 54 31 chr11 6360450 6360816 -115483040 + RLTR11A2 LTR ERVK 119 505 -23 8 633 681 233 57 0 chr11 6360872 6361031 -115482825 + B3 SINE B2 13 180 -36 8 633 1189 61 0 7 chr11 6361139 6361288 -115482568 - B1_Mus1 SINE Alu 0 148 1 8 633 724 262 7 0 chr11 6361288 6361433 -115482423 - ID_B1 SINE B4 -68 156 11 8 633 370 53 35 0 chr11 6361442 6361499 -115482357 + (TATG)n Simple_repeat Simple_repeat 2 60 0 8 633 433 298 23 8 chr11 6361522 6361654 -115482202 - B4A SINE B4 -4 288 155 8 633 334 332 156 10 chr11 6361784 6362091 -115481765 - BLACKJACK DNA AcHobo -483 2461 2110 8 633 269 273 80 0 chr11 6362099 6362187 -115481669 + PB1D7 SINE Alu 7 101 -19 8 633 454 229 46 37 chr11 6362246 6362355 -115481501 + B1_Mur2 SINE Alu 23 132 -17 8 633 692 140 0 0 chr11 6362388 6362495 -115481361 + B1_Mur4 SINE Alu 44 150 0 8 633 1122 92 104 0 chr11 6363070 6363243 -115480613 + B2_Mm2 SINE B2 2 192 -3 8 633 995 138 63 6 chr11 6363258 6363433 -115480423 + B2_Mm2 SINE B2 4 188 -7 8 633 1122 69 14 0 chr11 6363438 6363583 -115480273 + B1_Mus2 SINE Alu 1 147 0 8 633 430 211 82 21 chr11 6363591 6363688 -115480168 - B3 SINE B2 -113 103 1 8 633 822 102 0 45 chr11 6363984 6364117 -115479739 - B1_Mur2 SINE Alu 0 149 23 8 633 278 172 156 0 chr11 6364196 6364260 -115479596 - B3A SINE B2 -123 75 2 8 633 709 176 30 0 chr11 6364289 6364420 -115479436 + B1_Mus1 SINE Alu 1 135 -13 8 633 276 30 0 0 chr11 6364420 6364453 -115479403 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 8 633 1014 52 0 0 chr11 6364736 6364871 -115478985 - B1_Mm SINE Alu -2 145 11 8 633 412 178 27 82 chr11 6364779 6364889 -115478967 - MT2B LTR ERVL -344 257 154 8 633 998 85 65 0 chr11 6365119 6365272 -115478584 + B2_Mm2 SINE B2 1 163 -32 8 633 528 191 44 37 chr11 6365438 6365574 -115478282 - B1F2 SINE Alu 0 149 13 8 633 263 267 0 0 chr11 6365596 6365612 -115478244 + ORR1B1-int LTR MaLR 632 647 -862 8 633 779 27 3 4 chr11 6365612 6365733 -115478123 + B1_Mm SINE Alu 1 120 0 8 633 576 246 205 0 chr11 6365750 6365921 -115477935 - B3 SINE B2 -10 206 1 8 633 409 231 37 9 chr11 6365934 6366043 -115477813 - PB1D7 SINE Alu -8 112 1 8 633 634 238 26 52 chr11 6366062 6366217 -115477639 - RSINE1 SINE B4 -2 163 13 8 633 497 205 173 0 chr11 6366813 6366940 -115476916 - B1_Mur1 SINE Alu 0 149 1 8 633 23 0 0 0 chr11 6374763 6374786 -115469070 + AT_rich Low_complexity Low_complexity 1 23 0 8 633 37 23 0 0 chr11 6375210 6375254 -115468602 + GC_rich Low_complexity Low_complexity 1 44 0 8 633 30 45 0 0 chr11 6375357 6375401 -115468455 + GC_rich Low_complexity Low_complexity 1 44 0 8 633 27 49 0 0 chr11 6375498 6375539 -115468317 + GC_rich Low_complexity Low_complexity 1 41 0 8 633 352 162 7 51 chr11 6375782 6375919 -115467937 + (CCG)n Simple_repeat Simple_repeat 2 132 0 8 633 279 211 0 82 chr11 6375924 6376058 -115467798 + C-rich Low_complexity Low_complexity 6 128 0 8 633 204 250 8 53 chr11 6376002 6376133 -115467723 + (CCG)n Simple_repeat Simple_repeat 2 126 0 8 633 254 271 67 45 chr11 6376410 6376499 -115467357 - ORR1E LTR MaLR -169 190 100 8 633 1496 28 50 0 chr11 6376796 6376978 -115466878 - B2_Mm1t SINE B2 -1 192 2 8 633 647 277 159 4 chr11 6377008 6377240 -115466616 - B4A SINE B4 -2 290 23 8 633 1368 86 11 5 chr11 6377717 6377904 -115465952 - B2_Mm1t SINE B2 -5 188 1 8 633 900 171 79 56 chr11 6378895 6379111 -115464745 - URR1A DNA MER1_type 0 226 6 8 633 477 343 53 10 chr11 6379714 6379920 -115463936 + B4A SINE B4 58 272 -20 8 633 200 322 0 11 chr11 6380052 6380146 -115463710 + CT-rich Low_complexity Low_complexity 2 94 0 8 633 225 328 88 0 chr11 6380155 6380280 -115463576 - L1MC4 LINE L1 -142 7900 7765 8 633 341 289 148 11 chr11 6382371 6382553 -115461303 - L1MB2 LINE L1 -299 5872 5666 8 633 401 176 20 71 chr11 6382628 6382726 -115461130 - L1MB2 LINE L1 -519 5649 5557 8 633 3304 242 118 37 chr11 6382766 6383820 -115460036 + Lx8 LINE L1 6307 7445 -28 8 633 1142 82 0 13 chr11 6383859 6384008 -115459848 + B1_Mus2 SINE Alu 1 147 0 8 633 216 295 60 50 chr11 6384058 6384158 -115459698 - B1F2 SINE Alu -48 101 1 8 633 1765 232 83 20 chr11 6384667 6385160 -115458696 - RLTR28 LTR ERVL 0 524 1 8 633 928 65 0 0 chr11 6386266 6386390 -115457466 - B2_Mm2 SINE B2 -71 124 1 8 633 385 261 19 115 chr11 6386460 6386525 -115457331 - B3A SINE B2 -1 194 131 8 633 243 0 0 0 chr11 6386525 6386552 -115457304 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 633 385 324 34 27 chr11 6386552 6386649 -115457207 - B3A SINE B2 -56 142 46 8 633 350 296 9 28 chr11 6386789 6386925 -115456931 - B1F SINE Alu -2 147 15 8 633 246 234 0 0 chr11 6386921 6386968 -115456888 + RMER30 DNA MER1_type 5 51 -151 8 633 1080 212 155 52 chr11 6387454 6387916 -115455940 - RMER4B LTR ERVK 0 466 33 8 633 916 77 131 0 chr11 6387927 6388057 -115455799 - B1_Mus1 SINE Alu 0 148 2 8 633 769 214 0 28 chr11 6388235 6388379 -115455477 + B1_Mur2 SINE Alu 9 148 -1 8 633 948 169 206 0 chr11 6388411 6388630 -115455226 + RMER10B LTR ERVL 22 285 -113 8 633 1484 47 10 25 chr11 6388671 6388867 -115454989 - B2_Mm1t SINE B2 0 193 1 8 633 1423 53 26 21 chr11 6389103 6389134 -115454722 - B2_Mm1t SINE B2 0 193 161 8 633 207 0 0 0 chr11 6389134 6389157 -115454699 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 633 1423 53 26 21 chr11 6389157 6389316 -115454540 - B2_Mm1t SINE B2 -33 160 2 8 633 946 181 23 115 chr11 6390598 6390631 -115453225 + B3 SINE B2 9 40 -176 9 633 1221 69 0 0 chr11 6390631 6390776 -115453080 + B1_Mus2 SINE Alu 3 147 0 9 633 946 181 23 115 chr11 6390776 6390960 -115452896 + B3 SINE B2 41 206 -10 9 633 187 29 0 79 chr11 6390983 6391021 -115452835 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 9 633 691 176 80 7 chr11 6391023 6391160 -115452696 - B1_Mur3 SINE Alu 0 149 3 9 633 181 0 69 0 chr11 6391170 6391199 -115452657 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 9 633 344 143 40 54 chr11 6391228 6391302 -115452554 + B1_Mm SINE Alu 75 147 0 9 633 369 317 34 67 chr11 6391286 6391400 -115452456 + Charlie5 DNA MER1_type 2406 2516 -108 9 633 1667 16 0 16 chr11 6391400 6391591 -115452265 + B2_Mm1a SINE B2 2 189 -4 9 633 369 317 34 67 chr11 6391591 6391655 -115452201 + Charlie5 DNA MER1_type 2517 2578 -46 9 633 285 271 117 17 chr11 6391781 6391898 -115451958 + ID_B1 SINE B4 70 198 -26 9 633 3043 56 23 40 chr11 6391898 6391965 -115451891 - RMER16 LTR ERVK 0 533 475 9 633 1218 56 7 0 chr11 6391965 6392109 -115451747 + B1_Mus2 SINE Alu 2 146 -1 9 633 3043 62 23 37 chr11 6392109 6392492 -115451364 - RMER16 LTR ERVK -59 474 2 9 633 264 217 133 0 chr11 6392537 6392597 -115451259 + ID4_ SINE ID 3 70 -13 9 633 1181 76 0 0 chr11 6392605 6392750 -115451106 + B1_Mus1 SINE Alu 2 146 -2 9 633 1047 147 0 0 chr11 6392750 6392927 -115450929 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 9 633 580 191 102 8 chr11 6393583 6393710 -115450146 - B3 SINE B2 -77 139 1 9 633 1174 74 0 0 chr11 6393794 6393942 -115449914 - B1_Mus1 SINE Alu 0 148 1 9 633 560 237 8 0 chr11 6393945 6394063 -115449793 - PB1D9 SINE Alu 0 120 2 9 633 759 273 31 10 chr11 6394075 6394271 -115449585 + RCHARR1 DNA MER1_type 67 266 -708 9 633 1362 197 93 3 chr11 6394721 6395012 -115448844 + RCHARR1 DNA MER1_type 290 606 -368 9 633 947 77 131 0 chr11 6395054 6395184 -115448672 + B1_Mm SINE Alu 1 147 0 9 633 1788 130 18 127 chr11 6395203 6395450 -115448406 - RMER17C LTR ERVK -11 399 181 9 633 771 11 0 0 chr11 6395450 6395538 -115448318 + (GAA)n Simple_repeat Simple_repeat 3 90 0 9 633 1788 130 18 127 chr11 6395538 6395738 -115448118 - RMER17C LTR ERVK -230 180 1 9 633 242 330 11 42 chr11 6395738 6395813 -115448043 + RCHARR1 DNA MER1_type 638 709 -265 9 633 24 0 0 0 chr11 6395818 6395842 -115448014 + GC_rich Low_complexity Low_complexity 1 24 0 9 633 507 233 133 15 chr11 6396175 6396310 -115447546 - RSINE1 SINE B4 -11 154 4 9 633 1209 194 5 9 chr11 6396323 6396536 -115447320 - B3 SINE B2 -4 212 1 9 633 241 333 35 95 chr11 6396554 6396670 -115447186 - PB1D10 SINE Alu 0 117 9 9 633 286 312 83 0 chr11 6396585 6396681 -115447175 - ID_B1 SINE B4 -43 181 78 9 633 189 0 0 0 chr11 6397083 6397104 -115446752 + (T)n Simple_repeat Simple_repeat 1 21 0 9 633 1142 71 0 0 chr11 6397107 6397248 -115446608 - B1_Mus1 SINE Alu -6 142 2 9 633 653 65 0 0 chr11 6397261 6397353 -115446503 - B2_Mm1t SINE B2 0 193 102 9 633 720 109 27 0 chr11 6398386 6398496 -115445360 - ORR1C1 LTR MaLR 0 378 266 9 633 329 105 313 17 chr11 6398499 6398614 -115445242 - B2_Mm2 SINE B2 0 195 47 9 633 865 148 7 14 chr11 6398680 6398824 -115445032 - B2_Mm1t SINE B2 -14 179 37 9 633 990 208 130 73 chr11 6398776 6399077 -115444779 - ORR1C2 LTR MaLR -66 318 1 9 633 824 97 8 0 chr11 6399713 6399837 -115444019 + (GAAA)n Simple_repeat Simple_repeat 1 125 0 9 633 1147 76 7 0 chr11 6399837 6399981 -115443875 + B1_Mus2 SINE Alu 3 147 0 9 633 183 184 0 0 chr11 6399981 6400019 -115443837 + A-rich Low_complexity Low_complexity 1 38 0 9 633 276 287 11 11 chr11 6400523 6400611 -115443245 + BC1_Mm scRNA scRNA 14 101 -51 9 633 307 229 196 10 chr11 6400618 6400715 -115443141 + PB1 SINE Alu 11 125 -2 9 633 298 291 25 0 chr11 6400735 6400814 -115443042 + ID4_ SINE ID 3 83 0 9 633 480 292 0 71 chr11 6400878 6400913 -115442943 + B1F1 SINE Alu 20 54 -95 9 633 3040 29 3 0 chr11 6400913 6401258 -115442598 + ORR1A0 LTR MaLR 1 346 0 9 633 480 292 0 71 chr11 6401258 6401362 -115442494 + B1F1 SINE Alu 55 149 0 9 633 665 220 243 0 chr11 6401388 6401561 -115442295 + B3 SINE B2 2 216 0 9 633 767 288 68 0 chr11 6401623 6401904 -115441952 + L1M4 LINE L1 5488 5787 -397 9 633 397 331 6 142 chr11 6401907 6402010 -115441846 + RSINE1 SINE B4 14 98 -67 9 633 1150 65 0 0 chr11 6402010 6402149 -115441707 + B1_Mus1 SINE Alu 2 140 -8 9 633 266 0 29 0 chr11 6402149 6402183 -115441673 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 633 397 331 6 142 chr11 6402183 6402247 -115441609 + RSINE1 SINE B4 99 158 -7 9 633 243 61 0 0 chr11 6402248 6402281 -115441575 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 633 317 145 97 0 chr11 6402362 6402424 -115441432 - URR1B DNA MER1_type 0 225 158 9 633 2233 114 6 0 chr11 6402428 6402745 -115441111 - ORR1A2 LTR MaLR -8 319 1 9 633 1480 70 0 5 chr11 6402771 6402959 -115440897 + B2_Mm2 SINE B2 3 189 -6 9 633 1195 63 0 0 chr11 6402960 6403103 -115440753 - B1_Mus1 SINE Alu -5 143 1 9 633 649 148 133 0 chr11 6403105 6403174 -115440682 - URR1B DNA MER1_type -72 153 83 9 633 1371 55 21 27 chr11 6403174 6403361 -115440495 + B2_Mm2 SINE B2 3 188 -7 9 633 649 148 133 0 chr11 6403361 6403426 -115440430 - URR1B DNA MER1_type -143 82 2 9 633 728 267 43 14 chr11 6403583 6403792 -115440064 + ID_B1 SINE B4 6 220 -4 9 633 741 254 29 6 chr11 6403797 6403995 -115439861 + B3A SINE B2 1 202 -14 9 633 21 0 0 0 chr11 6404051 6404072 -115439784 + AT_rich Low_complexity Low_complexity 1 21 0 9 633 708 203 23 0 chr11 6404078 6404211 -115439645 + B1_Mur1 SINE Alu 9 144 -5 9 633 341 250 0 0 chr11 6404528 6404604 -115439252 + PB1D10 SINE Alu 36 111 -6 9 633 325 285 82 93 chr11 6404549 6404609 -115439247 + B4 SINE B4 31 134 -158 9 633 425 225 12 0 chr11 6404609 6404689 -115439167 + B1_Mur4 SINE Alu 5 85 -65 9 633 325 285 82 93 chr11 6404689 6404731 -115439125 + B4 SINE B4 135 210 -82 9 633 390 125 0 36 chr11 6405128 6405211 -115438645 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 633 244 281 31 155 chr11 6405392 6405489 -115438367 + RSINE1 SINE B4 81 165 0 9 633 288 129 78 19 chr11 6405573 6405676 -115438180 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 9 633 1040 51 7 21 chr11 6405682 6405822 -115438034 - B1_Mus1 SINE Alu -1 147 10 9 633 451 246 47 101 chr11 6405689 6405838 -115438018 - B4A SINE B4 -71 221 81 9 633 1911 103 27 0 chr11 6405844 6406107 -115437749 + RLTR19A LTR ERVK 227 496 0 9 633 1367 127 109 0 chr11 6406108 6406337 -115437519 - RLTR25B LTR ERVK -774 254 1 9 633 1521 248 90 0 chr11 6408635 6408990 -115434866 + MTD LTR MaLR 18 404 -15 9 633 216 255 0 0 chr11 6409062 6409113 -115434743 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 633 181 57 57 0 chr11 6409550 6409585 -115434271 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 9 633 1246 62 0 0 chr11 6409585 6409731 -115434125 - B1_Mus1 SINE Alu 0 148 3 9 633 207 419 9 0 chr11 6412739 6412844 -115431012 + MIR SINE MIR 16 121 -141 9 633 1343 198 93 98 chr11 6413207 6413353 -115430503 + MTD LTR MaLR 1 126 -293 9 633 795 186 162 11 chr11 6413353 6413538 -115430318 - B3 SINE B2 -2 214 2 9 633 1343 198 93 98 chr11 6413538 6413810 -115430046 + MTD LTR MaLR 127 417 -2 9 633 282 293 85 0 chr11 6413876 6413958 -115429898 + PB1D10 SINE Alu 14 102 -15 9 633 256 309 0 24 chr11 6413972 6414055 -115429801 + ID4 SINE ID 3 83 0 9 633 235 262 15 15 chr11 6414055 6414121 -115429735 + GA-rich Low_complexity Low_complexity 2 67 0 9 633 707 197 83 8 chr11 6414224 6414357 -115429499 - B1_Mur2 SINE Alu -2 147 5 9 633 805 179 20 33 chr11 6415385 6415535 -115428321 + B1_Mur3 SINE Alu 2 149 0 9 633 203 79 0 26 chr11 6415535 6415574 -115428282 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 9 633 480 163 0 0 chr11 6415573 6415659 -115428197 + GA-rich Low_complexity Low_complexity 2 87 0 9 633 201 213 0 0 chr11 6418628 6418675 -115425181 + CT-rich Low_complexity Low_complexity 2 48 0 9 633 542 183 0 8 chr11 6421187 6421308 -115422548 + CT-rich Low_complexity Low_complexity 3 122 0 9 633 537 16 0 0 chr11 6421384 6421446 -115422410 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 9 633 1002 85 77 0 chr11 6421448 6421578 -115422278 - B1_Mus2 SINE Alu -6 141 2 9 633 393 201 23 12 chr11 6421607 6421759 -115422097 - B2_Mm2 SINE B2 -6 210 2 9 633 22 56 0 0 chr11 6421771 6421807 -115422049 + AT_rich Low_complexity Low_complexity 1 36 0 9 633 1022 30 0 51 chr11 6421807 6421945 -115421911 - B1_Mm SINE Alu 0 147 17 9 633 182 37 0 36 chr11 6422485 6422513 -115421343 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 9 79 751 231 0 0 chr11 6422514 6422657 -115421199 - B1_Mus1 SINE Alu -2 146 4 9 634 244 333 23 0 chr11 6423074 6423161 -115420695 - MER58B DNA MER1_type -195 146 58 9 634 724 191 52 31 chr11 6423648 6423817 -115420039 - B2_Mm2 SINE B2 -16 182 9 9 634 1113 103 6 12 chr11 6423833 6424000 -115419856 - B2_Mm1a SINE B2 -27 166 1 9 634 1114 102 6 46 chr11 6424331 6424505 -115419351 - B2_Mm2 SINE B2 -19 176 10 9 634 1024 101 0 0 chr11 6424549 6424687 -115419169 - B1_Mus1 SINE Alu -5 143 6 9 634 574 245 0 65 chr11 6424687 6424715 -115419141 - ID_B1 SINE B4 -1 219 65 9 634 365 211 50 59 chr11 6424688 6424789 -115419067 - B3 SINE B2 -52 164 65 9 634 475 240 57 9 chr11 6424798 6424903 -115418953 - B1_Mur4 SINE Alu -30 120 11 9 634 239 319 96 45 chr11 6424903 6424975 -115418881 - ID_B1 SINE B4 -27 197 12 9 634 246 184 282 26 chr11 6425321 6425399 -115418457 - PB1D7 SINE Alu -5 115 18 9 634 1255 115 0 11 chr11 6425603 6425788 -115418068 - B2_Mm2 SINE B2 -5 190 8 1 634 443 274 9 0 chr11 6426212 6426318 -115417538 + ID_B1 SINE B4 84 190 -34 1 634 331 320 46 23 chr11 6426318 6426343 -115417513 + B1F SINE Alu 3 136 -13 1 634 239 304 0 112 chr11 6426619 6426708 -115417148 + RSINE1 SINE B4 87 165 0 1 634 1023 111 80 23 chr11 6426737 6426895 -115416961 + B2_Mm2 SINE B2 1 165 -30 1 634 2719 61 255 12 chr11 6426895 6427307 -115416549 - RLTR1B LTR ERV1 0 512 1 1 634 1023 111 80 23 chr11 6427307 6427323 -115416533 + B2_Mm2 SINE B2 166 185 -10 1 634 243 238 0 0 chr11 6427328 6427370 -115416486 + B1_Mus2 SINE Alu 2 43 -104 1 634 1171 82 0 0 chr11 6427467 6427613 -115416243 + B1_Mus2 SINE Alu 2 147 0 1 634 529 226 43 9 chr11 6427784 6427900 -115415956 + PB1D9 SINE Alu 1 120 0 1 634 839 110 59 0 chr11 6429167 6429303 -115414553 - B1_Mus1 SINE Alu 0 148 5 1 634 216 196 196 0 chr11 6429471 6429522 -115414334 - ID2 SINE ID -21 62 2 1 634 289 316 67 73 chr11 6429651 6429815 -115414041 + RSINE1 SINE B4 3 165 0 1 634 646 208 17 0 chr11 6429854 6429974 -115413882 + B3 SINE B2 1 122 -94 1 634 590 237 29 37 chr11 6430131 6430267 -115413589 + RSINE1 SINE B4 2 136 -29 1 634 21 24 0 47 chr11 6430271 6430298 -115413558 + AT_rich Low_complexity Low_complexity 1 27 0 1 634 1620 37 21 0 chr11 6430298 6430487 -115413369 + B2_Mm1a SINE B2 1 193 0 1 634 21 24 0 47 chr11 6430487 6430502 -115413354 + AT_rich Low_complexity Low_complexity 1 14 0 1 634 1609 37 0 21 chr11 6430502 6430693 -115413163 + B2_Mm1a SINE B2 1 187 -6 1 634 21 36 0 0 chr11 6430709 6430737 -115413119 + AT_rich Low_complexity Low_complexity 1 28 0 1 634 2072 190 0 64 chr11 6430748 6431089 -115412767 - MTC LTR MaLR -8 413 98 1 634 1227 61 0 0 chr11 6431089 6431236 -115412620 - B1_Mm SINE Alu 0 147 1 1 634 2072 190 0 64 chr11 6431236 6431315 -115412541 - MTC LTR MaLR -324 97 20 1 634 626 119 30 0 chr11 6431341 6431475 -115412381 + (TG)n Simple_repeat Simple_repeat 1 138 0 1 634 2376 134 56 67 chr11 6431475 6431955 -115411901 + IAPLTR2_Mm LTR ERVK 1 475 0 1 634 4663 67 4 33 chr11 6431957 6432644 -115411212 + IAPEz-int LTR ERVK 3 662 -5819 1 634 434 66 0 32 chr11 6432644 6432707 -115411149 + IAPEz-int LTR ERVK 1359 1419 -5062 1 634 1765 102 0 0 chr11 6432712 6432958 -115410898 + IAPEz-int LTR ERVK 2252 2497 -5183 1 634 890 88 24 0 chr11 6432953 6433078 -115410778 + IAPEz-int LTR ERVK 4783 4910 -2770 1 634 20268 16 2 3 chr11 6433080 6435442 -115408414 + IAPEz-int LTR ERVK 4123 6481 0 1 634 2376 134 56 67 chr11 6435442 6435922 -115407934 + IAPLTR2_Mm LTR ERVK 1 475 0 1 634 470 58 46 0 chr11 6435923 6436010 -115407846 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 634 331 202 309 0 chr11 6436013 6436097 -115407759 - B3 SINE B2 -77 139 30 1 634 252 86 0 0 chr11 6436097 6436132 -115407724 + (TCC)n Simple_repeat Simple_repeat 2 36 0 1 634 204 277 0 0 chr11 6436164 6436211 -115407645 + C-rich Low_complexity Low_complexity 3 49 0 1 634 230 350 0 29 chr11 6436215 6436243 -115407613 - BC1_Mm scRNA scRNA -45 107 8 1 634 375 253 0 0 chr11 6436243 6436318 -115407538 - ID SINE ID -142 82 8 1 634 280 226 0 0 chr11 6436341 6436394 -115407462 + B3 SINE B2 1 53 -163 1 634 545 239 119 51 chr11 6436402 6436578 -115407278 + B3A SINE B2 7 194 -4 1 634 1707 11 0 5 chr11 6436581 6436773 -115407083 + B2_Mm1a SINE B2 2 192 -1 1 634 552 68 0 0 chr11 6436777 6436851 -115407005 + B1_Mus2 SINE Alu 65 138 -9 1 634 345 47 0 0 chr11 6436851 6436894 -115406962 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 634 416 38 0 0 chr11 6436905 6436958 -115406898 + B1_Mus2 SINE Alu 89 141 -6 1 634 249 33 0 0 chr11 6436960 6436990 -115406866 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 634 1507 49 32 0 chr11 6437114 6437299 -115406557 + B2_Mm1a SINE B2 2 192 -1 1 634 1529 48 37 0 chr11 6437538 6437725 -115406131 + B2_Mm2 SINE B2 2 195 0 1 634 1278 34 0 0 chr11 6437730 6437876 -115405980 + B1_Mm SINE Alu 2 147 0 1 634 289 217 14 14 chr11 6437938 6438008 -115405848 - ID_B1 SINE B4 0 224 155 1 634 743 252 88 110 chr11 6438005 6438081 -115405775 + ORR1D2 LTR MaLR 135 203 -167 1 634 935 124 204 6 chr11 6438081 6438243 -115405613 + B2_Mm2 SINE B2 2 195 0 1 634 743 252 88 110 chr11 6438243 6438393 -115405463 + ORR1D2 LTR MaLR 204 356 -14 1 634 411 278 111 102 chr11 6438446 6438662 -115405194 - ID_B1 SINE B4 -5 219 2 1 634 1186 115 11 11 chr11 6439013 6439031 -115404825 - B2_Mm2 SINE B2 -19 176 159 1 634 315 0 0 0 chr11 6439031 6439066 -115404790 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 634 1186 115 11 11 chr11 6439066 6439223 -115404633 - B2_Mm2 SINE B2 -37 158 1 1 634 263 239 10 120 chr11 6439228 6439328 -115404528 - B1_Mur2 SINE Alu -1 148 60 1 634 509 76 11 32 chr11 6439381 6439476 -115404380 + (GAGAA)n Simple_repeat Simple_repeat 4 96 0 1 634 1009 252 59 24 chr11 6439590 6439879 -115403977 + MER89 LTR ERV1 24 322 -237 1 634 214 247 100 38 chr11 6440149 6440229 -115403627 - PB1 SINE Alu -3 124 40 1 634 810 244 28 11 chr11 6440260 6440438 -115403418 + RLTR18B LTR ERVK 9 189 -323 1 634 1357 31 0 0 chr11 6440466 6440625 -115403231 + B2_Mm1a SINE B2 2 160 -33 1 634 330 26 0 0 chr11 6440626 6440665 -115403191 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1 634 491 83 324 27 chr11 6440749 6440860 -115402996 - B2_Mm2 SINE B2 -5 190 47 1 634 1158 90 5 145 chr11 6440926 6441133 -115402723 - B2_Mm1t SINE B2 -14 179 2 1 634 688 280 119 61 chr11 6441212 6441524 -115402332 + RLTR18B LTR ERVK 287 616 0 1 634 594 240 39 0 chr11 6441561 6441690 -115402166 - ID_B1 SINE B4 -7 217 84 1 634 461 242 85 106 chr11 6441617 6441853 -115402003 + MER89 LTR ERV1 329 559 0 1 634 733 249 70 30 chr11 6441952 6442151 -115401705 + ID_B1 SINE B4 13 219 -5 1 634 1153 58 0 7 chr11 6442530 6442668 -115401188 + B1_Mus2 SINE Alu 1 137 -10 1 634 266 0 0 29 chr11 6442668 6442703 -115401153 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 634 1153 208 109 124 chr11 6442727 6442872 -115400984 - MTD LTR MaLR -14 405 220 1 634 225 0 0 0 chr11 6442872 6442897 -115400959 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 634 1153 208 109 124 chr11 6442897 6442908 -115400948 - MTD LTR MaLR -200 219 212 1 634 679 208 243 23 chr11 6442908 6443085 -115400771 - B3 SINE B2 0 216 1 1 634 1153 208 109 124 chr11 6443085 6443195 -115400661 - MTD LTR MaLR -208 211 120 1 634 937 220 29 39 chr11 6443195 6443346 -115400510 + B3 SINE B2 1 156 -60 1 634 324 0 0 0 chr11 6443346 6443382 -115400474 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 634 937 220 29 39 chr11 6443382 6443438 -115400418 + B3 SINE B2 157 206 -10 1 634 1153 208 109 124 chr11 6443438 6443580 -115400276 - MTD LTR MaLR -300 119 1 1 634 566 174 17 17 chr11 6444390 6444507 -115399349 + Lx8 LINE L1 6906 7022 -451 1 634 518 252 9 0 chr11 6444513 6444620 -115399236 + B1_Mus1 SINE Alu 10 117 -31 1 634 373 272 34 87 chr11 6444657 6444727 -115399129 + ID_B1 SINE B4 84 224 0 1 634 638 38 0 0 chr11 6444727 6444806 -115399050 + B1_Mm SINE Alu 69 147 0 1 634 416 233 192 0 chr11 6444834 6444954 -115398902 + Lx8 LINE L1 7110 7252 -221 1 634 948 150 0 7 chr11 6445044 6445192 -115398664 - B1_Mus1 SINE Alu -1 147 1 1 634 994 167 194 0 chr11 6445349 6445529 -115398327 + B3 SINE B2 1 215 -1 1 634 933 62 148 0 chr11 6446016 6446144 -115397712 - B1_Mus1 SINE Alu 0 148 2 1 634 305 256 35 47 chr11 6446261 6446347 -115397509 - PB1D10 SINE Alu -31 86 2 1 634 24 91 0 0 chr11 6446867 6446933 -115396923 + GC_rich Low_complexity Low_complexity 1 66 0 1 634 25 31 0 0 chr11 6446968 6447000 -115396856 + GC_rich Low_complexity Low_complexity 1 32 0 1 634 198 143 0 0 chr11 6447090 6447125 -115396731 + (CGGG)n Simple_repeat Simple_repeat 2 36 0 1 634 1198 62 7 0 chr11 6448358 6448504 -115395352 - B1_Mus2 SINE Alu 0 147 1 1 634 541 179 101 29 chr11 6448773 6448911 -115394945 - B1_Mur3 SINE Alu -1 148 1 1 634 991 113 142 6 chr11 6448917 6449086 -115394770 - B2_Mm1t SINE B2 -1 192 1 1 634 1182 98 69 0 chr11 6449094 6449267 -115394589 - B2_Mm2 SINE B2 -9 186 2 1 634 1281 124 27 0 chr11 6449347 6449533 -115394323 - B2_Mm1t SINE B2 -2 191 1 1 634 466 205 114 8 chr11 6449611 6449734 -115394122 - B1_Mur3 SINE Alu -13 136 1 1 634 683 266 42 46 chr11 6449828 6450045 -115393811 + ID_B1 SINE B4 1 216 -8 1 634 695 216 103 3 chr11 6450516 6450698 -115393158 - B3A SINE B2 0 216 27 1 634 500 211 14 36 chr11 6450716 6450854 -115393002 - Lx4B LINE L1 -7 7051 6917 1 634 284 158 0 0 chr11 6450854 6450904 -115392952 - B3 SINE B2 -148 50 1 1 634 683 261 26 52 chr11 6450904 6451098 -115392758 - B3A SINE B2 -4 194 6 1 634 626 260 153 47 chr11 6451198 6451388 -115392468 - ID_B1 SINE B4 -6 218 9 1 634 1154 83 0 0 chr11 6451405 6451549 -115392307 - B1_Mus2 SINE Alu 0 147 4 1 634 1314 103 5 5 chr11 6451560 6451745 -115392111 - B2_Mm1a SINE B2 -8 185 1 1 634 788 277 14 32 chr11 6451756 6451976 -115391880 - ID_B1 SINE B4 -7 217 2 1 634 287 65 22 0 chr11 6452043 6452089 -115391767 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 634 337 239 0 15 chr11 6452090 6452158 -115391698 - ID SINE ID -157 67 1 1 634 277 286 28 75 chr11 6452163 6452269 -115391587 - PB1D9 SINE Alu -19 101 1 1 634 1306 93 11 21 chr11 6452278 6452464 -115391392 - B2_Mm1t SINE B2 -8 185 2 1 634 761 204 22 39 chr11 6452491 6452670 -115391186 - B3 SINE B2 0 216 41 1 634 378 231 0 90 chr11 6452759 6452859 -115390997 + B3A SINE B2 102 192 -6 1 634 385 280 95 92 chr11 6453286 6453412 -115390444 + MLT1B LTR MaLR 4 114 -276 1 634 366 283 109 8 chr11 6453412 6453540 -115390316 - B1F SINE Alu -7 142 2 1 634 385 280 95 92 chr11 6453540 6453739 -115390117 + MLT1B LTR MaLR 115 330 -60 1 634 1270 41 0 0 chr11 6453771 6453917 -115389939 - B1_Mus2 SINE Alu 0 147 2 1 634 846 38 0 0 chr11 6453971 6454077 -115389779 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 1 634 796 150 0 8 chr11 6454087 6454215 -115389641 - B1_Mus2 SINE Alu -12 135 9 1 634 371 244 39 85 chr11 6454102 6454232 -115389624 - MT2B LTR ERVL -323 278 155 1 634 599 261 98 83 chr11 6454339 6454615 -115389241 - B4A SINE B4 -12 280 1 1 634 435 246 62 62 chr11 6454762 6454892 -115388964 - B1F1 SINE Alu -10 139 10 1 634 706 139 57 8 chr11 6455078 6455201 -115388655 - B1_Mur1 SINE Alu 0 149 21 1 634 375 248 47 62 chr11 6455102 6455231 -115388625 - MT2B LTR ERVL -323 278 152 1 634 435 272 0 28 chr11 6455297 6455403 -115388453 - BC1_Mm scRNA scRNA -48 104 2 1 634 719 172 85 15 chr11 6455949 6456079 -115387777 + B1_Mur1 SINE Alu 2 140 -9 1 634 585 259 85 85 chr11 6456079 6456290 -115387566 + B3 SINE B2 2 212 -4 1 634 985 135 13 20 chr11 6456528 6456679 -115387177 - B1_Mur4 SINE Alu 0 150 1 1 634 1021 190 56 0 chr11 6456737 6456932 -115386924 - B3 SINE B2 0 216 11 1 634 863 226 56 63 chr11 6457072 6457293 -115386563 - Lx8 LINE L1 -398 7075 6851 1 634 1386 94 16 0 chr11 6457293 6457485 -115386371 + B2_Mm2 SINE B2 1 195 0 1 634 863 226 56 63 chr11 6457485 6457532 -115386324 - Lx8 LINE L1 -623 6850 6809 1 634 606 213 63 0 chr11 6457579 6457706 -115386150 + B3 SINE B2 76 210 -6 1 634 400 237 143 36 chr11 6457765 6457905 -115385951 - Lx8 LINE L1 -681 6792 6638 1 634 353 269 133 8 chr11 6457907 6458027 -115385829 - B1F SINE Alu -13 136 2 1 634 270 244 89 44 chr11 6458240 6458330 -115385526 - Lx8 LINE L1 -132 7341 7248 1 634 261 261 0 0 chr11 6458444 6458490 -115385366 - B1F2 SINE Alu -101 48 3 1 634 345 247 13 25 chr11 6458703 6458782 -115385074 + ID4_ SINE ID 6 83 0 1 634 434 289 236 12 chr11 6460131 6460383 -115383473 + Tigger5 DNA MER2_type 2111 2406 0 1 634 220 327 73 55 chr11 6460515 6460625 -115383231 - MIR SINE MIR -60 148 37 1 634 582 209 154 7 chr11 6461915 6462064 -115381792 - ID_B1 SINE B4 -52 172 2 1 634 581 200 35 7 chr11 6462188 6462308 -115381548 - PB1D9 SINE Alu -21 126 12 1 634 1378 80 32 16 chr11 6463157 6463347 -115380509 + B2_Mm2 SINE B2 2 194 -1 1 634 612 125 0 0 chr11 6464522 6464618 -115379238 + (TCCC)n Simple_repeat Simple_repeat 1 96 0 1 634 537 172 126 0 chr11 6464618 6464740 -115379116 - B1F2 SINE Alu -6 143 2 1 634 266 350 65 7 chr11 6464740 6464792 -115379064 - MT2B LTR ERVL -427 174 115 1 634 371 286 27 54 chr11 6464791 6464902 -115378954 + PB1D7 SINE Alu 7 114 -6 1 634 1648 26 0 15 chr11 6464912 6465107 -115378749 + B2_Mm1t SINE B2 2 193 0 1 634 227 288 17 0 chr11 6465244 6465303 -115378553 - PB1D10 SINE Alu -16 101 42 1 634 286 322 65 48 chr11 6465584 6465708 -115378148 - Tigger7 DNA MER2_type 0 2491 2366 1 634 403 233 67 19 chr11 6465778 6465883 -115377973 - Tigger7 DNA MER2_type -2373 118 9 1 634 1193 68 0 0 chr11 6467508 6467655 -115376201 + B1_Mm SINE Alu 1 147 0 1 634 305 24 0 23 chr11 6467736 6467779 -115376077 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1 634 1065 39 0 0 chr11 6467779 6467908 -115375948 - B1_Mus2 SINE Alu -13 134 6 1 634 502 263 67 82 chr11 6467888 6468083 -115375773 + ID_B1 SINE B4 27 218 -6 1 634 201 195 0 0 chr11 6468210 6468251 -115375605 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 634 1072 103 7 0 chr11 6471391 6471537 -115372319 - B1_Mus1 SINE Alu 0 148 2 1 634 348 281 78 11 chr11 6471537 6471616 -115372240 - B3 SINE B2 -13 203 118 1 634 386 295 18 0 chr11 6471695 6471807 -115372049 - PB1D10 SINE Alu -1 116 3 1 634 384 294 133 40 chr11 6471883 6472206 -115371650 - MTEa LTR MaLR 0 379 3 1 634 25 0 0 0 chr11 6472518 6472543 -115371313 + AT_rich Low_complexity Low_complexity 1 25 0 1 634 267 93 0 0 chr11 6472548 6472591 -115371265 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 634 385 202 110 22 chr11 6472678 6472769 -115371087 + B4 SINE B4 189 287 -5 1 634 706 143 31 0 chr11 6472776 6472937 -115370919 + (CA)n Simple_repeat Simple_repeat 2 167 0 1 634 261 206 33 0 chr11 6472961 6473053 -115370803 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 634 301 234 0 25 chr11 6473206 6473285 -115370571 + L1MD LINE L1 3394 3470 -2676 1 634 368 316 71 82 chr11 6473463 6474052 -115369804 + L1MD LINE L1 4818 5400 -746 1 634 261 0 0 0 chr11 6474234 6474263 -115369593 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 634 474 65 0 0 chr11 6474263 6474325 -115369531 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 634 1227 62 0 0 chr11 6474350 6474496 -115369360 + B1_Mus2 SINE Alu 2 147 0 1 634 219 69 0 0 chr11 6474496 6474525 -115369331 + (A)n Simple_repeat Simple_repeat 1 29 0 1 634 204 111 0 0 chr11 6474525 6474561 -115369295 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 1 634 439 219 10 188 chr11 6474568 6474685 -115369171 + PB1 SINE Alu 1 107 -20 1 634 783 113 14 83 chr11 6474752 6474897 -115368959 + B1_Mus1 SINE Alu 14 148 0 1 634 225 94 0 0 chr11 6474897 6474929 -115368927 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 1 634 933 101 14 0 chr11 6475089 6475227 -115368629 - B1_Mus1 SINE Alu -7 141 2 1 634 298 260 8 0 chr11 6475121 6475244 -115368612 - ORR1B1-int LTR MaLR -755 754 631 1 634 1131 12 198 30 chr11 6475345 6475512 -115368344 + B2_Mm2 SINE B2 1 195 0 1 634 737 202 23 0 chr11 6475531 6475660 -115368196 + B1_Mur4 SINE Alu 1 132 -18 1 634 414 0 0 0 chr11 6475660 6475706 -115368150 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 634 283 301 12 0 chr11 6476038 6476121 -115367735 - ERVL-int LTR ERVL -3477 2280 2197 1 634 510 237 184 0 chr11 6476455 6476569 -115367287 + B1F SINE Alu 7 141 -8 1 634 295 282 144 25 chr11 6476622 6476782 -115367074 + B2_Mm2 SINE B2 5 183 -12 1 634 496 145 0 26 chr11 6476782 6476860 -115366996 - B1_Mur3 SINE Alu 0 149 74 1 634 366 279 6 226 chr11 6476790 6476882 -115366974 - B4 SINE B4 -72 220 164 1 634 1167 58 0 0 chr11 6476882 6477020 -115366836 - B1_Mus1 SINE Alu -9 139 2 1 634 517 158 0 13 chr11 6477020 6477097 -115366759 - B1_Mus2 SINE Alu -66 81 6 1 634 378 233 0 51 chr11 6477097 6477108 -115366748 - ID_B1 SINE B4 -129 163 80 1 634 1241 22 0 0 chr11 6477138 6477276 -115366580 + B1_Mm SINE Alu 1 138 -9 1 634 215 31 31 0 chr11 6477276 6477308 -115366548 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 634 1778 175 94 80 chr11 6477526 6477750 -115366106 - MTC LTR MaLR 0 421 210 1 634 1156 54 0 39 chr11 6477750 6477904 -115365952 - B1_Mus1 SINE Alu 0 148 1 1 634 1778 175 94 80 chr11 6477904 6478094 -115365762 - MTC LTR MaLR -212 209 1 1 634 46 45 0 0 chr11 6478106 6478173 -115365683 + AT_rich Low_complexity Low_complexity 1 67 0 1 634 562 333 108 55 chr11 6478204 6478751 -115365105 - Lx8 LINE L1 -2 7471 6896 1 634 427 321 50 36 chr11 6478858 6478997 -115364859 + RSINE1 SINE B4 3 143 -22 1 634 794 137 0 17 chr11 6479060 6479179 -115364677 - PB1D9 SINE Alu -1 119 3 1 634 258 329 140 34 chr11 6479232 6479496 -115364360 - B4 SINE B4 0 292 1 1 634 286 289 36 0 chr11 6479497 6479580 -115364276 - PB1D10 SINE Alu -31 86 1 1 634 305 268 31 0 chr11 6479597 6479694 -115364162 - L1MCa LINE L1 -2572 3749 3650 1 634 25 0 0 28 chr11 6479702 6479724 -115364132 + AT_rich Low_complexity Low_complexity 1 22 0 1 634 1213 54 0 13 chr11 6479724 6479873 -115363983 + B1_Mus2 SINE Alu 1 147 0 1 634 25 0 0 28 chr11 6479873 6479886 -115363970 + AT_rich Low_complexity Low_complexity 1 13 0 1 634 1261 54 71 6 chr11 6479886 6480054 -115363802 - B2_Mm2 SINE B2 -14 181 3 1 634 232 164 48 16 chr11 6480054 6480116 -115363740 - L1MC LINE L1 -2657 3489 3426 1 634 329 184 150 16 chr11 6480127 6480254 -115363602 - L1MC LINE L1 -3341 2805 2662 1 634 938 215 142 12 chr11 6480351 6480605 -115363251 - B4A SINE B4 -2 290 4 1 634 413 198 172 30 chr11 6480682 6480781 -115363075 + PB1D9 SINE Alu 6 118 -2 1 634 278 311 16 0 chr11 6480839 6480900 -115362956 - ID4 SINE ID -6 77 16 1 634 1174 134 38 0 chr11 6481037 6481223 -115362633 - B2_Mm2 SINE B2 -2 193 1 1 634 343 323 60 48 chr11 6481223 6481389 -115362467 - L1MCa LINE L1 -3784 2537 2370 1 634 384 190 198 0 chr11 6481389 6481502 -115362354 + B1_Mur2 SINE Alu 3 140 -9 1 634 780 302 89 20 chr11 6481601 6481848 -115362008 - B4A SINE B4 -22 270 7 1 634 286 292 25 66 chr11 6482081 6482323 -115361533 - L1MCa LINE L1 -4239 2269 2038 1 634 401 109 0 0 chr11 6482486 6482541 -115361315 - ORR1B1 LTR MaLR 0 394 340 1 634 1122 50 0 54 chr11 6482563 6482710 -115361146 - B1_Mus1 SINE Alu -9 139 1 1 634 254 170 200 0 chr11 6482710 6482810 -115361046 - L1MCa LINE L1 -4623 1885 1766 1 634 809 205 6 13 chr11 6482840 6482998 -115360858 - B3 SINE B2 0 216 60 1 634 414 252 58 0 chr11 6482967 6483070 -115360786 + B1F1 SINE Alu 41 149 0 1 634 603 257 0 0 chr11 6483088 6483201 -115360655 + B3 SINE B2 30 142 -74 1 634 2208 85 14 0 chr11 6483213 6483508 -115360348 - ORR1A2 LTR MaLR -28 299 1 1 634 739 230 73 26 chr11 6483558 6483750 -115360106 + B3 SINE B2 16 216 0 1 634 24 0 0 0 chr11 6483935 6483959 -115359897 + AT_rich Low_complexity Low_complexity 1 24 0 1 634 334 121 17 0 chr11 6484134 6484192 -115359664 + B3 SINE B2 1 59 -157 1 634 198 0 0 0 chr11 6484232 6484254 -115359602 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 634 245 233 17 142 chr11 6484268 6484316 -115359540 + ID_B1 SINE B4 119 223 -1 1 634 383 157 14 28 chr11 6484316 6484388 -115359468 + B1_Mus2 SINE Alu 76 146 -1 1 634 344 177 36 127 chr11 6485442 6485459 -115358397 + ID_B1 SINE B4 118 217 -7 1 634 689 75 43 0 chr11 6485459 6485552 -115358304 + B1_Mur2 SINE Alu 46 142 -7 1 634 508 221 35 9 chr11 6485722 6485836 -115358020 - PB1D9 SINE Alu -1 119 3 1 634 491 296 40 0 chr11 6486545 6486670 -115357186 - B1F1 SINE Alu -5 144 15 1 634 203 0 0 36 chr11 6488029 6488057 -115355799 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 634 1063 45 83 0 chr11 6488061 6488194 -115355662 - B1_Mus1 SINE Alu 0 148 5 1 634 383 237 163 30 chr11 6488219 6488354 -115355502 - ID_B1 SINE B4 0 224 72 1 634 221 177 16 31 chr11 6489094 6489158 -115354698 + T-rich Low_complexity Low_complexity 3 65 0 1 634 560 260 13 25 chr11 6489192 6489350 -115354506 - RSINE1 SINE B4 -9 156 1 1 634 523 248 19 0 chr11 6491193 6491298 -115352558 + PB1D7 SINE Alu 3 109 -11 1 634 659 271 129 58 chr11 6491319 6491641 -115352215 - ORR1E LTR MaLR -6 373 6 1 634 2057 254 122 51 chr11 6491632 6492324 -115351532 - ORR1E-int LTR MaLR -27 1936 782 1 634 1301 230 189 3 chr11 6492384 6492755 -115351101 - ORR1E-int LTR MaLR -1134 446 7 1 634 397 288 130 7 chr11 6492761 6492915 -115350941 - MT2A LTR ERVL -7 526 354 1 634 188 180 27 164 chr11 6493000 6493073 -115350783 - L3 LINE CR1 -2249 2240 2178 1 634 406 269 36 18 chr11 6495117 6495227 -115348629 + PB1D10 SINE Alu 1 112 -5 1 634 419 250 73 0 chr11 6495344 6495440 -115348416 - ID_B1 SINE B4 -15 209 107 1 634 261 57 0 0 chr11 6501936 6501971 -115341885 + (CAG)n Simple_repeat Simple_repeat 3 37 0 1 634 231 88 0 0 chr11 6504564 6504598 -115339258 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 634 665 133 13 112 chr11 6506764 6506916 -115336940 - B1_Mur4 SINE Alu -5 145 9 3 634 1792 211 56 77 chr11 6506985 6507256 -115336600 + MTC-int LTR MaLR 3 287 -971 4 634 1023 36 56 21 chr11 6507256 6507398 -115336458 - B1_Mm SINE Alu 0 147 1 5 634 1792 211 56 77 chr11 6507398 6507701 -115336155 + MTC-int LTR MaLR 288 565 -693 4 634 450 176 150 29 chr11 6507852 6507946 -115335910 + MTC-int LTR MaLR 958 1048 -210 4 634 1375 29 80 0 chr11 6507946 6507961 -115335895 - B2_Mm1a SINE B2 -3 190 176 6 634 234 0 0 0 chr11 6507961 6507987 -115335869 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7 634 1375 29 80 0 chr11 6507987 6508146 -115335710 - B2_Mm1a SINE B2 -18 175 3 6 634 450 176 150 29 chr11 6508146 6508191 -115335665 + MTC-int LTR MaLR 1049 1113 -145 4 634 802 138 57 14 chr11 6508214 6508354 -115335502 - B1_Mm SINE Alu 0 147 2 8 634 499 259 119 0 chr11 6508358 6508501 -115335355 - RSINE1 SINE B4 -4 161 2 9 634 1183 49 0 0 chr11 6508528 6508671 -115335185 + B1_Mus1 SINE Alu 3 145 -3 1 634 198 0 0 0 chr11 6508671 6508693 -115335163 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 634 341 182 0 0 chr11 6508759 6508825 -115335031 + B1F1 SINE Alu 84 149 0 1 634 729 132 124 0 chr11 6508829 6508958 -115334898 + B1_Mus1 SINE Alu 3 147 -1 1 634 240 59 0 0 chr11 6508964 6508998 -115334858 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 634 340 349 20 20 chr11 6509017 6509034 -115334822 + ID_B1 SINE B4 76 224 0 1 634 468 267 38 8 chr11 6509034 6509166 -115334690 + B1F2 SINE Alu 14 149 0 1 634 1516 47 5 0 chr11 6509583 6509775 -115334081 + B2_Mm1t SINE B2 1 193 0 1 634 1151 43 0 0 chr11 6509828 6509969 -115333887 + B1_Mus1 SINE Alu 1 141 -7 1 634 477 0 0 0 chr11 6509972 6510025 -115333831 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 634 329 223 122 37 chr11 6510030 6510137 -115333719 + ORR1D1 LTR MaLR 107 222 -152 2 634 492 265 8 0 chr11 6510140 6510257 -115333599 + MERVL_2A-int LTR ERVL 2828 2945 -2816 2 634 1541 249 129 92 chr11 6510253 6510562 -115333294 + MERVL_2A-int LTR ERVL 4750 5086 -675 2 634 744 170 49 7 chr11 6510562 6510704 -115333152 + B1_Mur2 SINE Alu 1 148 -1 2 634 1541 249 129 92 chr11 6510704 6511061 -115332795 + MERVL_2A-int LTR ERVL 5087 5441 -320 2 634 289 244 73 0 chr11 6511108 6511190 -115332666 + MT2A LTR ERVL 3 90 -443 2 634 277 308 150 0 chr11 6511190 6511228 -115332628 + MTE2b LTR MaLR 3 140 -239 2 634 312 382 67 29 chr11 6511634 6511844 -115332012 + MT2A LTR ERVL 191 408 -125 2 634 363 192 0 60 chr11 6511887 6511970 -115331886 + ID_B1 SINE B4 94 171 -53 2 634 708 171 20 33 chr11 6512005 6512156 -115331700 + B1_Mur4 SINE Alu 1 149 -1 2 634 203 161 0 0 chr11 6512293 6512324 -115331532 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 2 634 329 216 0 111 chr11 6512337 6512436 -115331420 + MT2B LTR ERVL 169 256 -345 2 634 739 130 24 0 chr11 6512347 6512470 -115331386 + B1_Mur2 SINE Alu 14 139 -10 2 634 707 189 20 27 chr11 6512766 6512913 -115330943 - B1_Mus2 SINE Alu -1 146 1 3 634 212 300 16 16 chr11 6512954 6513015 -115330841 - B4 SINE B4 -147 145 85 3 634 247 259 90 35 chr11 6513084 6513228 -115330628 + L1MD LINE L1 4820 4971 -1175 3 634 1242 97 11 0 chr11 6513259 6513435 -115330421 + B2_Mm1t SINE B2 2 179 -14 3 634 264 117 322 59 chr11 6513497 6513588 -115330268 + B2_Mm2 SINE B2 47 174 -21 3 634 1168 34 0 20 chr11 6513588 6513738 -115330118 + B1_Mm SINE Alu 1 147 0 3 634 264 117 322 59 chr11 6513738 6513764 -115330092 + B2_Mm2 SINE B2 175 195 0 3 634 435 292 38 71 chr11 6513798 6513900 -115329956 + B4 SINE B4 109 214 -78 3 634 255 103 0 0 chr11 6513900 6513939 -115329917 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 3 634 435 292 38 71 chr11 6513939 6514020 -115329836 + B4 SINE B4 215 286 -6 3 634 578 152 141 64 chr11 6514086 6514226 -115329630 + B3 SINE B2 2 139 -56 3 634 242 222 36 36 chr11 6514297 6514381 -115329475 + L1MD LINE L1 5055 5138 -1008 3 634 1270 87 6 0 chr11 6514449 6514622 -115329234 + B2_Mm1a SINE B2 2 175 -18 3 634 1104 72 0 0 chr11 6514678 6514817 -115329039 + B1_Mus1 SINE Alu 1 139 -9 4 634 409 246 9 17 chr11 6514836 6514952 -115328904 + L1MD LINE L1 5174 5288 -858 3 634 279 280 27 0 chr11 6514953 6515028 -115328828 + ID4 SINE ID 3 79 -4 4 634 406 256 232 24 chr11 6515161 6515325 -115328531 + B3A SINE B2 1 198 0 4 634 1274 65 0 0 chr11 6517752 6517920 -115325936 + B2_Mm2 SINE B2 1 168 -27 4 634 184 271 42 0 chr11 6521589 6521637 -115322219 + L2 LINE L2 449 498 -2921 4 634 197 273 41 93 chr11 6522145 6522242 -115321614 + L3b LINE CR1 382 473 -9 4 634 1191 60 71 0 chr11 6522357 6522525 -115321331 + B2_Mm2 SINE B2 2 181 -14 4 634 399 109 0 5 chr11 6522553 6522618 -115321238 + B2_Mm2 SINE B2 47 109 -107 4 634 1143 75 0 0 chr11 6522705 6522852 -115321004 + B1_Mus1 SINE Alu 2 148 0 4 634 364 251 49 47 chr11 6523539 6523597 -115320259 + B1_Mus2 SINE Alu 5 61 -89 4 634 351 0 0 0 chr11 6523597 6523636 -115320220 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 634 364 246 47 47 chr11 6523636 6523720 -115320136 + B1_Mus2 SINE Alu 61 144 -3 4 634 452 342 20 0 chr11 6524608 6524760 -115319096 + B3A SINE B2 42 196 -2 5 634 610 256 43 18 chr11 6524769 6524932 -115318924 - ID_B1 SINE B4 -53 171 5 5 634 1205 41 0 0 chr11 6525476 6525623 -115318233 + B1_Mus2 SINE Alu 1 147 0 5 634 225 0 0 0 chr11 6525623 6525648 -115318208 + (A)n Simple_repeat Simple_repeat 1 25 0 5 634 478 208 61 15 chr11 6526614 6526746 -115317110 + B1_Mur2 SINE Alu 1 138 -11 5 634 325 307 52 59 chr11 6526865 6526968 -115316888 - RSINE1 SINE B4 -29 136 30 5 634 731 182 14 0 chr11 6526968 6527111 -115316745 - B1_Mur4 SINE Alu -1 149 5 5 634 325 307 52 59 chr11 6527111 6527142 -115316714 - RSINE1 SINE B4 -136 29 3 5 634 317 257 144 7 chr11 6527368 6527521 -115316335 + L1M4 LINE L1 4966 5139 -1007 5 634 3394 120 123 36 chr11 6527613 6528287 -115315569 - RMER6A LTR ERVK -23 733 1 5 634 490 172 216 0 chr11 6528895 6529029 -115314827 - MTC LTR MaLR 0 421 259 6 634 1476 53 16 0 chr11 6529139 6529327 -115314529 - B2_Mm2 SINE B2 -4 191 1 6 634 656 135 10 0 chr11 6529342 6529446 -115314410 + Lx5 LINE L1 6794 6898 -152 6 634 272 211 0 17 chr11 6529599 6529657 -115314199 - MTC LTR MaLR -156 223 167 6 634 462 202 127 9 chr11 6529680 6529790 -115314066 - B1_Mus2 SINE Alu -9 138 16 6 634 760 88 18 0 chr11 6529791 6529905 -115313951 + B2_Mm2 SINE B2 10 125 -70 6 634 261 0 0 0 chr11 6529945 6529974 -115313882 + (TAA)n Simple_repeat Simple_repeat 1 29 0 6 634 255 304 16 111 chr11 6529986 6530112 -115313744 - MTC LTR MaLR -189 190 77 6 634 1350 65 32 5 chr11 6530249 6530436 -115313420 - B2_Mm2 SINE B2 -2 193 2 6 634 3436 72 10 8 chr11 6530443 6530930 -115312926 - L1_Mus3 LINE L1 -3 6635 6148 6 634 307 111 111 0 chr11 6530946 6531000 -115312856 - B1_Mus1 SINE Alu -86 62 3 6 634 1333 95 21 0 chr11 6531002 6531192 -115312664 - B2_Mm2 SINE B2 -1 194 1 6 634 234 211 0 0 chr11 6531192 6531244 -115312612 - MTC LTR MaLR -327 52 1 6 634 1721 231 135 29 chr11 6531312 6531444 -115312412 - RMER15 LTR ERVL -23 552 422 7 634 1833 156 76 20 chr11 6531444 6531798 -115312058 - ORR1D1 LTR MaLR 0 374 1 7 634 1721 231 135 29 chr11 6531798 6532147 -115311709 - RMER15 LTR ERVL -154 421 20 7 634 674 290 128 55 chr11 6532670 6532981 -115310875 + MER21B LTR ERV1 104 441 -422 7 634 1672 193 56 48 chr11 6532981 6533356 -115310500 + ORR1C1 LTR MaLR 1 378 0 7 634 674 290 128 55 chr11 6533356 6533427 -115310429 + MER21B LTR ERV1 442 514 -349 7 634 1419 179 129 49 chr11 6533783 6534148 -115309708 - MTD LTR MaLR -13 406 13 7 634 1984 162 58 41 chr11 6534584 6534678 -115309178 + MTC LTR MaLR 3 96 -325 7 634 1246 67 78 0 chr11 6534678 6534858 -115308998 + B2_Mm2 SINE B2 1 194 -1 7 634 1984 162 58 41 chr11 6534858 6535175 -115308681 + MTC LTR MaLR 97 421 0 7 634 198 0 0 0 chr11 6535458 6535480 -115308376 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 7 634 331 111 360 27 chr11 6535760 6535871 -115307985 - B2_Mm2 SINE B2 0 195 48 7 634 1195 115 16 0 chr11 6535952 6535973 -115307883 - B2_Mm2 SINE B2 0 195 172 7 634 1100 68 7 0 chr11 6535973 6536119 -115307737 - B1_Mus1 SINE Alu 0 148 2 8 634 1195 115 16 0 chr11 6536119 6536288 -115307568 - B2_Mm2 SINE B2 -24 171 3 7 634 369 75 0 0 chr11 6537457 6537510 -115306346 + (CAAAC)n Simple_repeat Simple_repeat 1 53 0 8 634 249 203 62 0 chr11 6539528 6539592 -115304264 - L1MB5 LINE L1 -182 5992 5925 8 634 696 83 0 0 chr11 6540232 6540328 -115303528 + (TC)n Simple_repeat Simple_repeat 2 97 0 8 634 1354 67 17 0 chr11 6540328 6540506 -115303350 - B2_Mm2 SINE B2 -14 181 1 8 634 246 62 0 0 chr11 6540662 6540694 -115303162 + (A)n Simple_repeat Simple_repeat 1 32 0 8 634 1122 68 0 7 chr11 6540827 6540976 -115302880 - B1_Mus1 SINE Alu 0 148 1 8 634 321 289 0 0 chr11 6541164 6541323 -115302533 + (TG)n Simple_repeat Simple_repeat 2 160 0 8 634 207 0 0 0 chr11 6541523 6541546 -115302310 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 8 634 876 222 14 55 chr11 6541774 6541993 -115301863 - B3 SINE B2 0 216 7 8 634 594 164 0 0 chr11 6542355 6542477 -115301379 + (TG)n Simple_repeat Simple_repeat 2 123 0 9 634 451 295 44 13 chr11 6542478 6542636 -115301220 - RSINE1 SINE B4 0 165 3 9 634 846 150 187 11 chr11 6542652 6542834 -115301022 - B3 SINE B2 -2 214 1 9 634 278 43 0 61 chr11 6542880 6542929 -115300927 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 9 634 381 155 104 14 chr11 6543446 6543546 -115300310 + B1_Mus2 SINE Alu 2 128 -21 9 634 183 184 0 0 chr11 6543555 6543593 -115300263 + (TATG)n Simple_repeat Simple_repeat 2 39 0 9 634 267 238 0 87 chr11 6543595 6543664 -115300192 + ID4 SINE ID 3 65 -18 9 634 351 0 0 0 chr11 6543670 6543709 -115300147 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 634 261 91 45 0 chr11 6543709 6543753 -115300103 - B2_Mm2 SINE B2 -148 47 2 9 634 590 188 27 0 chr11 6543812 6543924 -115299932 + B1_Mur1 SINE Alu 7 121 -28 9 634 607 285 140 0 chr11 6545571 6545750 -115298106 + B3 SINE B2 13 216 0 1 634 580 283 31 0 chr11 6545803 6545962 -115297894 + B3A SINE B2 1 164 -34 1 634 240 111 0 0 chr11 6545970 6546006 -115297850 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 634 32 43 0 0 chr11 6546085 6546131 -115297725 + AT_rich Low_complexity Low_complexity 1 46 0 1 634 645 205 0 23 chr11 6546318 6546448 -115297408 + B3 SINE B2 14 140 -76 1 634 439 259 152 0 chr11 6546549 6546707 -115297149 + B3 SINE B2 35 216 0 1 634 243 271 248 0 chr11 6547334 6547467 -115296389 - MER89 LTR ERV1 -257 302 137 1 634 468 0 0 0 chr11 6547902 6547954 -115295902 + (CAACC)n Simple_repeat Simple_repeat 3 54 0 1 634 279 0 0 0 chr11 6548246 6548277 -115295579 + (T)n Simple_repeat Simple_repeat 1 31 0 1 634 840 190 3 0 chr11 6548617 6548935 -115294921 + (TG)n Simple_repeat Simple_repeat 1 319 0 1 634 830 162 6 0 chr11 6548972 6549151 -115294705 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 634 713 191 0 11 chr11 6549164 6549344 -115294512 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 634 818 168 0 11 chr11 6549367 6549548 -115294308 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 634 969 165 0 0 chr11 6549569 6549892 -115293964 + (TG)n Simple_repeat Simple_repeat 1 323 0 1 634 398 285 125 0 chr11 6549899 6550043 -115293813 - RSINE1 SINE B4 0 165 4 1 634 311 269 21 4 chr11 6550043 6550143 -115293713 - PB1D10 SINE Alu -17 100 1 1 634 210 200 20 0 chr11 6550145 6550195 -115293661 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1 634 356 245 152 6 chr11 6550893 6550914 -115292942 + Charlie5 DNA MER1_type 2297 2317 -307 1 634 246 32 0 0 chr11 6550914 6550945 -115292911 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 634 356 245 152 6 chr11 6550945 6551087 -115292769 + Charlie5 DNA MER1_type 2318 2483 -141 1 634 1248 207 292 7 chr11 6551435 6551859 -115291997 - RMER15 LTR ERVL 0 575 31 1 634 745 136 0 0 chr11 6551878 6551996 -115291860 - URR1B DNA MER1_type 0 225 108 1 634 299 292 81 34 chr11 6551996 6552024 -115291832 + CYRA11_Mm Unknown Y-chromosome 171 323 -294 1 634 226 355 47 24 chr11 6552265 6552392 -115291464 - L1M2a LINE L1 -5096 2072 1943 1 634 279 203 16 33 chr11 6552395 6552456 -115291400 - B1_Mus2 SINE Alu -85 62 3 1 634 218 179 16 82 chr11 6552406 6552467 -115291389 - B4 SINE B4 -157 135 79 1 634 300 290 0 55 chr11 6552683 6552847 -115291009 + L1M2 LINE L1 1910 2064 -4785 1 634 459 238 48 90 chr11 6552884 6552899 -115290957 - B4 SINE B4 -75 217 205 1 634 536 42 14 0 chr11 6552899 6552970 -115290886 + (TCC)n Simple_repeat Simple_repeat 3 74 0 1 634 773 58 0 0 chr11 6552976 6553080 -115290776 - B1_Mus1 SINE Alu -43 105 2 1 634 667 258 12 12 chr11 6553080 6553242 -115290614 + B3 SINE B2 55 216 0 1 634 459 238 48 90 chr11 6553080 6553143 -115290713 - B4 SINE B4 -88 191 37 1 634 1540 57 0 0 chr11 6553248 6553440 -115290416 + B2_Mm1t SINE B2 2 193 0 1 79 413 306 163 7 chr11 6553467 6553743 -115290113 + L1M2 LINE L1 2129 2447 -4402 1 635 852 159 0 0 chr11 6553767 6553943 -115289913 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 1 635 315 0 0 0 chr11 6553945 6553980 -115289876 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 1 635 1064 234 137 66 chr11 6554135 6554514 -115289342 - MTD LTR MaLR -4 415 10 1 635 851 135 229 0 chr11 6554568 6554738 -115289118 - B3 SINE B2 -7 209 1 1 635 614 275 70 9 chr11 6554743 6554956 -115288900 + L1MA5 LINE L1 6069 6294 -6 1 635 380 195 12 30 chr11 6555176 6555340 -115288516 + (TG)n Simple_repeat Simple_repeat 1 161 0 1 635 539 241 91 20 chr11 6557281 6557480 -115286376 - B3 SINE B2 -2 214 2 1 635 201 74 0 0 chr11 6557497 6557524 -115286332 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 635 180 0 0 0 chr11 6558726 6558746 -115285110 + (C)n Simple_repeat Simple_repeat 1 20 0 1 635 320 256 16 55 chr11 6559075 6559203 -115284653 + Lx8 LINE L1 7351 7473 0 1 635 186 133 0 0 chr11 6559248 6559278 -115284578 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 1 635 221 351 0 0 chr11 6559280 6559374 -115284482 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 635 523 133 0 77 chr11 6562303 6562498 -115281358 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 635 599 130 0 40 chr11 6562525 6562701 -115281155 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 635 182 37 0 36 chr11 6562831 6562859 -115280997 + (AGGGGG)n Simple_repeat Simple_repeat 2 28 0 1 635 226 180 19 74 chr11 6563984 6564038 -115279818 + MT2B LTR ERVL 13 63 -538 1 635 705 212 281 19 chr11 6563991 6564309 -115279547 + MTD LTR MaLR 18 419 0 1 635 754 149 62 21 chr11 6564526 6564670 -115279186 - B1_Mur4 SINE Alu 0 150 1 1 635 388 294 72 48 chr11 6564758 6564965 -115278891 + B3 SINE B2 1 212 -4 1 635 435 239 98 25 chr11 6565119 6565282 -115278574 - MTE2b LTR MaLR 0 419 245 1 635 267 164 18 0 chr11 6565335 6565390 -115278466 - MTD LTR MaLR -119 300 245 1 635 1320 185 78 27 chr11 6565450 6565745 -115278111 - MTD LTR MaLR -104 315 6 1 635 632 235 0 0 chr11 6565813 6565932 -115277924 - B3 SINE B2 -96 120 2 1 635 510 288 48 7 chr11 6565932 6566069 -115277787 - B4A SINE B4 -59 233 91 1 635 651 185 96 0 chr11 6566099 6566234 -115277622 - B1_Mur2 SINE Alu -1 148 1 1 635 409 263 11 0 chr11 6566236 6566331 -115277525 - B4A SINE B4 -195 97 2 1 635 240 341 34 0 chr11 6566430 6566518 -115277338 - B4A SINE B4 -121 171 81 1 635 538 221 14 64 chr11 6566567 6566707 -115277149 - B3A SINE B2 -63 135 3 1 635 201 154 0 0 chr11 6566715 6566754 -115277102 + A-rich Low_complexity Low_complexity 1 39 0 1 635 419 272 10 0 chr11 6566862 6566965 -115276891 - ID_B1 SINE B4 -35 189 86 1 635 245 281 24 0 chr11 6566979 6567061 -115276795 - L1M4 LINE L1 -1495 4651 4568 1 635 956 296 68 52 chr11 6567071 6567567 -115276289 - MT2A LTR ERVL -8 525 22 1 635 507 290 80 0 chr11 6567425 6567587 -115276269 - MTE2b LTR MaLR -204 175 1 1 635 1260 296 146 34 chr11 6567589 6567695 -115276161 - L1M4b LINE L1 -1584 5422 5297 1 635 2116 86 27 60 chr11 6567695 6568031 -115275825 - ORR1A2 LTR MaLR 0 327 3 1 635 1260 296 146 34 chr11 6568031 6568135 -115275721 - L1M4b LINE L1 -1710 5296 5190 1 635 966 181 18 37 chr11 6568135 6568353 -115275503 - B3 SINE B2 -1 215 2 1 635 1260 296 146 34 chr11 6568353 6569178 -115274678 - L1M4b LINE L1 -1817 5189 4271 1 635 373 294 20 97 chr11 6569337 6569533 -115274323 - MLT1B LTR MaLR -127 263 83 1 635 635 259 0 29 chr11 6569582 6569721 -115274135 - RSINE1 SINE B4 -28 137 3 1 635 442 367 118 18 chr11 6569837 6570337 -115273519 - L1M4b LINE L1 -6601 733 184 1 635 387 41 0 0 chr11 6570345 6570394 -115273462 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 635 233 314 0 0 chr11 6570405 6570475 -115273381 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 635 524 266 158 36 chr11 6570489 6570742 -115273114 - B4A SINE B4 -6 286 3 1 635 527 300 60 5 chr11 6571741 6571942 -115271914 + B3 SINE B2 1 212 -4 1 635 223 214 51 45 chr11 6572831 6573007 -115270849 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 1 635 223 211 46 46 chr11 6573114 6573288 -115270568 + (TCTCTG)n Simple_repeat Simple_repeat 5 178 0 1 635 293 263 0 0 chr11 6573943 6574019 -115269837 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 635 192 402 16 0 chr11 6575833 6575955 -115267901 - L3 LINE CR1 -111 4378 4255 1 635 422 301 115 77 chr11 6578125 6578543 -115265313 - RMER13A LTR ERVK -406 454 21 1 635 662 105 0 9 chr11 6578935 6579041 -115264815 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 1 635 266 320 51 10 chr11 6579217 6579315 -115264541 - ORR1E LTR MaLR -223 136 35 1 635 600 40 0 0 chr11 6579696 6579771 -115264085 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 635 318 148 0 0 chr11 6579995 6580049 -115263807 + (CAA)n Simple_repeat Simple_repeat 1 54 0 1 635 220 254 44 15 chr11 6580189 6580257 -115263599 + RSINE1 SINE B4 42 111 -54 1 635 441 0 0 0 chr11 6580267 6580316 -115263540 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 635 582 143 0 0 chr11 6580934 6581039 -115262817 + (TC)n Simple_repeat Simple_repeat 1 105 0 1 635 945 169 141 5 chr11 6581686 6581963 -115261893 + ORR1D1 LTR MaLR 6 384 0 1 635 2513 218 29 79 chr11 6581963 6582326 -115261530 + ORR1D1-int LTR MaLR 1 367 -1003 1 635 1537 170 144 12 chr11 6582326 6582672 -115261184 + ORR1B1 LTR MaLR 3 394 0 1 635 2513 218 29 79 chr11 6582672 6582992 -115260864 + ORR1D1-int LTR MaLR 368 650 -720 1 635 892 255 60 36 chr11 6583154 6583208 -115260648 - ORR1E LTR MaLR 0 379 297 1 635 1243 250 38 30 chr11 6583208 6583575 -115260281 + ORR1D2 LTR MaLR 1 370 0 1 635 892 292 75 37 chr11 6583575 6583857 -115259999 - ORR1E LTR MaLR -63 296 1 1 635 290 264 45 18 chr11 6583868 6583980 -115259876 - L1MC4 LINE L1 -4668 1547 1433 1 635 679 309 52 12 chr11 6584372 6584700 -115259156 - L1MC4 LINE L1 -4954 1261 921 1 635 243 0 0 0 chr11 6585145 6585172 -115258684 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 635 269 298 12 23 chr11 6585223 6585309 -115258547 - PB1D10 SINE Alu -1 116 32 1 635 25 31 0 0 chr11 6585695 6585727 -115258129 + AT_rich Low_complexity Low_complexity 1 32 0 1 635 354 340 0 0 chr11 6587407 6587513 -115256343 - RSINE1 SINE B4 -56 109 4 1 635 824 185 7 0 chr11 6587545 6587691 -115256165 - B1_Mus2 SINE Alu 0 147 1 1 635 1215 192 89 12 chr11 6587908 6588317 -115255539 + RMER15 LTR ERVL 62 568 -7 1 635 354 284 23 0 chr11 6588429 6588517 -115255339 + PB1D10 SINE Alu 1 90 -27 1 635 405 0 0 0 chr11 6588529 6588574 -115255282 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 635 603 161 67 0 chr11 6588576 6588725 -115255131 + L1M2 LINE L1 5329 5487 -804 1 635 827 148 0 15 chr11 6588725 6588862 -115254994 + B3 SINE B2 1 135 -81 1 635 268 336 52 0 chr11 6589061 6589177 -115254679 - ORR1E LTR MaLR -232 127 6 1 635 246 269 51 0 chr11 6589187 6589265 -115254591 + L1M5 LINE L1 3393 3474 -2672 1 635 528 16 0 0 chr11 6589438 6589499 -115254357 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 635 2348 84 16 0 chr11 6590185 6590507 -115253349 - ORR1A2 LTR MaLR 0 327 1 1 635 360 138 0 0 chr11 6590682 6590747 -115253109 + (CAT)n Simple_repeat Simple_repeat 2 66 0 1 635 1466 48 5 0 chr11 6590773 6590960 -115252896 + B2_Mm1t SINE B2 2 189 -4 1 635 450 302 20 20 chr11 6590960 6591112 -115252744 - RSINE1 SINE B4 -12 153 2 1 635 513 0 0 0 chr11 6591633 6591690 -115252166 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 635 464 72 14 0 chr11 6591976 6592045 -115251811 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 635 236 239 0 0 chr11 6592071 6592117 -115251739 + PB1D10 SINE Alu 55 100 -17 2 635 414 0 0 0 chr11 6593489 6593535 -115250321 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 635 364 292 94 0 chr11 6593575 6593681 -115250175 - RSINE1 SINE B4 -47 118 3 2 635 1417 53 27 0 chr11 6593696 6593884 -115249972 - B2_Mm1a SINE B2 0 193 1 2 635 425 254 60 16 chr11 6593890 6594074 -115249782 - L1M4b LINE L1 -4186 3148 2957 2 635 513 296 7 0 chr11 6594132 6594284 -115249572 - RMER1B Other Other -913 153 1 2 635 2531 129 124 39 chr11 6594620 6595135 -115248721 + RMER1A Other Other 459 1017 -13 2 635 301 267 183 54 chr11 6595136 6595322 -115248534 - L1M4b LINE L1 -4453 2881 2672 2 635 518 350 56 20 chr11 6595322 6595573 -115248283 + Tigger7 DNA MER2_type 18 277 -2214 2 635 252 122 0 0 chr11 6595693 6595734 -115248122 + (AGGGGG)n Simple_repeat Simple_repeat 6 46 0 2 635 476 270 61 36 chr11 6595735 6595931 -115247925 + Tigger7 DNA MER2_type 2255 2454 -37 2 635 204 40 0 0 chr11 6596018 6596043 -115247813 + (A)n Simple_repeat Simple_repeat 1 25 0 2 635 492 315 14 14 chr11 6596133 6596278 -115247578 + B3A SINE B2 24 168 -30 2 635 605 229 179 0 chr11 6596412 6596591 -115247265 - B3 SINE B2 -5 211 1 2 635 343 252 63 139 chr11 6596668 6596961 -115246895 - L1M4b LINE L1 -4732 2276 2013 2 635 600 269 21 0 chr11 6596961 6597106 -115246750 - B1_Mur1 SINE Alu -1 148 1 2 635 343 238 69 144 chr11 6597106 6597192 -115246664 - L1M4b LINE L1 -5321 2013 1920 2 635 346 162 0 91 chr11 6597363 6597416 -115246440 + RMER1C Other Other 1142 1190 -152 2 635 1499 57 0 10 chr11 6597416 6597611 -115246245 + B2_Mm1t SINE B2 1 193 0 2 635 538 206 30 176 chr11 6597611 6597789 -115246067 + RMER1C Other Other 1191 1342 0 2 635 256 263 73 73 chr11 6598690 6598813 -115245043 - LTR16A1 LTR ERVL -213 243 121 2 635 387 202 0 27 chr11 6598887 6598999 -115244857 + CT-rich Low_complexity Low_complexity 3 111 0 2 635 1345 195 162 6 chr11 6599003 6599343 -115244513 + MTD LTR MaLR 13 405 -14 2 635 779 108 0 45 chr11 6599662 6600263 -115243593 + (TG)n Simple_repeat Simple_repeat 1 573 0 2 635 285 286 23 45 chr11 6600891 6601067 -115242789 - Lx9 LINE L1 -7 7637 7466 2 635 180 219 0 0 chr11 6601073 6601114 -115242742 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 635 261 0 0 0 chr11 6601113 6601142 -115242714 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 635 396 59 0 0 chr11 6601141 6601192 -115242664 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 635 254 262 134 27 chr11 6601352 6601501 -115242355 - L1M4b LINE L1 -5471 1863 1699 2 635 900 238 29 88 chr11 6602174 6602482 -115241374 - B4A SINE B4 0 292 3 2 635 538 283 103 56 chr11 6602492 6602870 -115240986 - L1M4b LINE L1 -5821 1513 1118 2 635 206 93 93 0 chr11 6602899 6602942 -115240914 + A-rich Low_complexity Low_complexity 2 48 0 2 635 22 0 0 0 chr11 6603961 6603983 -115239873 + GC_rich Low_complexity Low_complexity 1 22 0 2 635 944 278 107 12 chr11 6604316 6604644 -115239212 + ORR1D2 LTR MaLR 1 359 -11 2 635 855 133 0 0 chr11 6606164 6606299 -115237557 + B1_Mus1 SINE Alu 8 142 -6 2 635 477 0 0 0 chr11 6606300 6606353 -115237503 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 635 276 274 68 10 chr11 6606712 6606815 -115237041 + L2 LINE L2 2548 2656 -763 2 635 313 195 50 25 chr11 6607163 6607284 -115236572 - RMER17B LTR ERVK -499 459 336 2 635 868 136 216 22 chr11 6607293 6607474 -115236382 - B3 SINE B2 0 216 1 2 635 1923 304 88 47 chr11 6608120 6609193 -115234663 - MuRRS4-int LTR ERV1 -3944 1119 3 2 635 2726 109 108 29 chr11 6609193 6609674 -115234182 - MURVY-LTR LTR ERV1 0 519 1 2 635 534 293 70 3 chr11 6612422 6612651 -115231205 - MTEa LTR MaLR -124 255 1 2 635 1946 118 57 103 chr11 6612813 6613182 -115230674 - ORR1B1 LTR MaLR -2 392 41 2 635 312 239 0 6 chr11 6615644 6615713 -115228143 - PB1D7 SINE Alu -80 67 1 2 635 724 292 47 30 chr11 6615714 6616011 -115227845 + L1MA9 LINE L1 5808 6109 -203 2 635 328 308 143 31 chr11 6616142 6616303 -115227553 + B3 SINE B2 2 180 -36 2 635 225 0 0 0 chr11 6616303 6616328 -115227528 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 635 261 0 0 0 chr11 6616328 6616356 -115227500 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 635 1033 169 6 11 chr11 6617993 6618167 -115225689 + RLTR24 LTR ERV1 357 529 0 2 635 223 206 9 89 chr11 6618255 6618367 -115225489 + T-rich Low_complexity Low_complexity 2 104 0 2 635 305 197 13 0 chr11 6618369 6618445 -115225411 + CT-rich Low_complexity Low_complexity 1 77 0 2 635 382 227 0 51 chr11 6618649 6618728 -115225128 + PB1D9 SINE Alu 40 114 -6 2 635 1157 178 92 11 chr11 6619005 6619278 -115224578 - Lx LINE L1 -12 6642 6359 2 635 1777 204 39 45 chr11 6619877 6620319 -115223537 + RMER17B LTR ERVK 1 439 -519 2 635 3035 183 19 40 chr11 6620323 6620968 -115222888 + RMER13B LTR ERVK 274 904 -4 2 635 270 0 0 0 chr11 6622188 6622218 -115221638 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 635 459 52 0 0 chr11 6622814 6622872 -115220984 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 2 635 630 254 20 27 chr11 6622924 6623074 -115220782 - B1F2 SINE Alu 0 149 1 2 635 245 175 0 0 chr11 6623102 6623142 -115220714 - ID4 SINE ID -16 67 28 2 635 907 262 23 18 chr11 6623194 6623402 -115220454 + ID_B1 SINE B4 1 210 -14 2 635 279 79 0 0 chr11 6623402 6623440 -115220416 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 2 635 825 190 66 70 chr11 6623462 6623543 -115220313 - Lx7 LINE L1 -70 7626 7546 2 635 356 0 0 22 chr11 6623543 6623588 -115220268 + (TATAA)n Simple_repeat Simple_repeat 1 44 0 2 635 825 190 66 70 chr11 6623588 6623778 -115220078 - Lx7 LINE L1 -151 7545 7357 2 635 3463 189 23 13 chr11 6623809 6624516 -115219340 - Lx7 LINE L1 -328 7368 6655 2 635 1432 223 75 3 chr11 6624556 6624862 -115218994 + RLTR14 LTR ERV1 3 330 -52 2 635 429 89 0 0 chr11 6624863 6624919 -115218937 + B2_Mm2 SINE B2 1 56 -139 2 635 398 197 0 0 chr11 6625162 6625238 -115218618 + RLTR14-int LTR ERV1 177 252 -5065 2 635 270 0 0 0 chr11 6625914 6625944 -115217912 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 635 2108 98 12 34 chr11 6625944 6626271 -115217585 - RLTR8 LTR ERVK -45 320 1 2 635 902 227 352 7 chr11 6626398 6626708 -115217148 + MTD LTR MaLR 1 417 -2 2 635 4040 215 132 42 chr11 6626708 6627861 -115215995 + MTD-int LTR MaLR 1 1258 0 2 635 2063 204 52 15 chr11 6627861 6628007 -115215849 + MTD LTR MaLR 1 155 -264 2 635 2236 101 0 121 chr11 6628007 6628069 -115215787 - ORR1A3 LTR MaLR 0 326 277 2 635 490 129 184 19 chr11 6628069 6628172 -115215684 - PB1D9 SINE Alu 0 120 1 2 635 2236 101 0 121 chr11 6628172 6628480 -115215376 - ORR1A3 LTR MaLR -50 276 1 2 635 2063 204 52 15 chr11 6628480 6628737 -115215119 + MTD LTR MaLR 156 419 0 2 635 548 205 65 16 chr11 6629652 6629776 -115214080 - MTD LTR MaLR -8 411 282 2 635 555 151 11 0 chr11 6629759 6629852 -115214004 - MTD LTR MaLR -325 94 1 2 635 348 24 0 0 chr11 6629990 6630031 -115213825 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 635 1066 225 85 8 chr11 6630031 6630277 -115213579 - B4 SINE B4 -23 269 5 2 635 878 222 45 70 chr11 6630652 6630894 -115212962 - B4A SINE B4 -55 237 2 2 635 262 280 27 0 chr11 6630937 6631012 -115212844 + ID2 SINE ID 5 81 -2 2 635 635 258 184 6 chr11 6631051 6631230 -115212626 + B3 SINE B2 1 211 -5 2 635 1172 271 80 39 chr11 6632725 6633089 -115210767 + MTE2b LTR MaLR 1 379 0 2 635 1625 278 12 14 chr11 6633090 6633506 -115210350 + MTE2b-int LTR MaLR 3 417 -1163 2 635 635 267 102 32 chr11 6633498 6633684 -115210172 + MTE2b-int LTR MaLR 553 751 -829 2 635 948 131 14 7 chr11 6633685 6633831 -115210025 - B1_Mur3 SINE Alu 0 149 3 2 635 1805 265 130 8 chr11 6633841 6634358 -115209498 + MTE2b-int LTR MaLR 862 1441 -139 2 635 929 122 7 33 chr11 6634359 6634511 -115209345 + B1_Mur4 SINE Alu 2 149 -1 2 635 247 198 17 43 chr11 6634512 6634579 -115209277 + A-rich Low_complexity Low_complexity 3 69 0 2 635 212 0 36 0 chr11 6634579 6634607 -115209249 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 2 635 247 198 17 43 chr11 6634607 6634655 -115209201 + A-rich Low_complexity Low_complexity 70 115 0 2 635 4134 170 129 26 chr11 6634992 6635915 -115207941 + RMER1A Other Other 7 1024 -6 2 635 1266 232 47 22 chr11 6635959 6636281 -115207575 - Lx6 LINE L1 -26 7434 7105 2 635 544 236 151 38 chr11 6636404 6636642 -115207214 + RLTR10A LTR ERVK 147 411 0 2 635 514 238 0 0 chr11 6636642 6636747 -115207109 + MTE2b-int LTR MaLR 1469 1573 -7 2 635 1791 197 97 31 chr11 6636754 6637120 -115206736 - MTD LTR MaLR -12 407 12 2 635 1044 146 0 0 chr11 6637120 6637298 -115206558 + (CAAGC)n Simple_repeat Simple_repeat 1 178 0 2 635 1791 197 97 31 chr11 6637298 6637313 -115206543 - MTD LTR MaLR -408 11 1 2 635 732 288 52 52 chr11 6637315 6637546 -115206310 + MTE2b LTR MaLR 145 375 -4 2 635 396 0 0 0 chr11 6637750 6637794 -115206062 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 635 405 335 32 19 chr11 6637937 6638153 -115205703 - L1M4 LINE L1 -578 5596 5378 2 635 1165 290 72 76 chr11 6638275 6638885 -115204971 + L1MD LINE L1 3320 3919 -2227 2 635 1516 189 105 17 chr11 6638885 6639229 -115204627 + ORR1D1 LTR MaLR 1 374 0 2 635 1165 290 72 76 chr11 6639229 6639313 -115204543 + L1MD LINE L1 3920 4011 -2135 2 635 849 62 0 0 chr11 6639325 6639437 -115204419 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 635 1040 128 139 30 chr11 6639642 6639843 -115204013 + URR1A DNA MER1_type 4 226 0 2 635 212 161 67 67 chr11 6641145 6641205 -115202651 - PB1D9 SINE Alu 0 120 61 2 635 234 0 0 0 chr11 6641272 6641298 -115202558 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 635 350 182 0 15 chr11 6641340 6641407 -115202449 - B1_Mur4 SINE Alu -84 66 1 2 635 325 211 289 0 chr11 6641439 6641529 -115202327 - PB1D9 SINE Alu -2 118 3 2 635 635 206 217 49 chr11 6641541 6641725 -115202131 - B3 SINE B2 0 216 2 2 635 309 226 137 119 chr11 6641726 6641844 -115202012 - ORR1E LTR MaLR -252 122 3 2 635 816 324 64 6 chr11 6641890 6642235 -115201621 + Lx8 LINE L1 6855 7219 -254 2 635 186 43 0 0 chr11 6642676 6642699 -115201157 + (A)n Simple_repeat Simple_repeat 1 23 0 2 635 233 311 0 0 chr11 6642801 6642862 -115200994 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2 635 180 0 0 0 chr11 6642945 6642965 -115200891 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 635 432 350 121 20 chr11 6642986 6643392 -115200464 + L1M4 LINE L1 1178 1638 -5008 2 635 601 281 17 70 chr11 6643392 6643564 -115200292 + RSINE1 SINE B4 1 163 -2 3 635 323 348 64 35 chr11 6643564 6643673 -115200183 + L1M4 LINE L1 1639 1736 -4910 2 635 807 276 58 27 chr11 6643693 6643950 -115199906 + Lx5 LINE L1 6778 7042 -8 3 635 246 178 0 0 chr11 6644046 6644091 -115199765 - MTE2b LTR MaLR 0 379 335 3 635 5838 75 3 0 chr11 6644122 6644905 -115198951 + L1_Mus4 LINE L1 5587 6371 -265 3 635 2938 12 0 0 chr11 6644905 6645227 -115198629 - RLTRETN_Mm LTR ERVK 0 322 1 3 635 35083 16 8 4 chr11 6645227 6649424 -115194432 - MMETn-int LTR ERVK 0 4844 631 3 635 5727 46 65 0 chr11 6649424 6650121 -115193735 - RLTR4_Mm LTR ERV1 0 742 1 3 635 65920 10 3 0 chr11 6650121 6657697 -115186159 - RLTR4_MM-int LTR ERV1 0 7601 1 3 635 5727 46 65 0 chr11 6657697 6658394 -115185462 - RLTR4_Mm LTR ERV1 0 742 1 3 635 5474 13 0 2 chr11 6658394 6659029 -115184827 - MMETn-int LTR ERVK -4210 634 1 3 635 2947 12 0 0 chr11 6659029 6659351 -115184505 - RLTRETN_Mm LTR ERVK 0 322 1 3 635 1807 114 7 41 chr11 6659351 6659643 -115184213 + Lx LINE L1 6366 6647 -7 3 635 727 237 68 134 chr11 6659674 6659966 -115183890 - MTE2b LTR MaLR -106 273 1 3 635 380 237 0 0 chr11 6660168 6660253 -115183603 + B1F SINE Alu 45 129 -20 3 635 315 0 0 0 chr11 6660265 6660300 -115183556 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 635 412 175 0 111 chr11 6660369 6660459 -115183397 - ID4_ SINE ID -3 80 1 3 635 309 219 148 35 chr11 6660572 6660714 -115183142 + L1M4 LINE L1 4033 4190 -1950 3 635 245 231 27 0 chr11 6660770 6660917 -115182939 + (CA)n Simple_repeat Simple_repeat 2 152 0 3 635 715 251 171 52 chr11 6661021 6661290 -115182566 - MTEa LTR MaLR -8 371 71 3 635 374 285 57 0 chr11 6661347 6661505 -115182351 + L1M4 LINE L1 4303 4469 -1677 3 635 362 300 10 52 chr11 6661604 6661821 -115182035 + L1M4 LINE L1 5021 5228 -918 3 635 659 286 145 5 chr11 6662611 6663055 -115180801 - L1MA4 LINE L1 -372 5928 5353 3 635 377 341 100 26 chr11 6663540 6663769 -115180087 - MLT1A LTR MaLR 0 374 129 3 635 218 162 24 36 chr11 6663895 6663916 -115179940 + polypurine Low_complexity Low_complexity 2 21 0 3 635 2769 109 176 33 chr11 6663916 6664427 -115179429 - RLTR31A_Mm LTR ERVK 0 584 1 3 635 802 161 14 22 chr11 6664427 6664676 -115179180 + GA-rich Low_complexity Low_complexity 1 247 0 3 635 279 228 0 0 chr11 6665613 6665670 -115178186 - ERVL-int LTR ERVL -4725 1032 976 3 635 444 289 105 20 chr11 6665680 6665832 -115178024 - MLT2D LTR ERVL -249 165 1 3 635 197 206 20 20 chr11 6666419 6666518 -115177338 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 635 372 193 68 3 chr11 6667175 6667273 -115176583 - B1F SINE Alu 0 120 18 3 635 1024 224 103 52 chr11 6669134 6669482 -115174374 - MTD LTR MaLR -7 412 1 3 635 189 0 0 0 chr11 6671459 6671480 -115172376 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 3 635 1397 201 141 0 chr11 6671746 6672080 -115171776 - MTD LTR MaLR -38 381 1 3 635 1002 251 161 51 chr11 6672086 6672577 -115171279 + MT2B LTR ERVL 1 545 -56 3 635 459 0 0 0 chr11 6672577 6672628 -115171228 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 635 511 212 7 7 chr11 6672691 6672843 -115171013 + (TA)n Simple_repeat Simple_repeat 2 153 0 3 635 336 308 25 8 chr11 6673138 6673256 -115170600 - MLT1C LTR MaLR -347 120 1 3 635 1129 219 71 28 chr11 6673512 6673766 -115170090 + RLTR18B LTR ERVK 1 265 -247 3 635 226 135 0 0 chr11 6673764 6673801 -115170055 + RLTR18B LTR ERVK 222 258 -254 3 635 1898 123 58 23 chr11 6673801 6674143 -115169713 - ORR1B1 LTR MaLR 0 394 41 3 635 875 199 40 117 chr11 6674228 6674501 -115169355 + RLTR18B LTR ERVK 255 506 -6 3 635 351 95 95 0 chr11 6675541 6675604 -115168252 - B3 SINE B2 -23 193 125 3 635 247 222 74 0 chr11 6676084 6676138 -115167718 + ID4 SINE ID 21 78 -5 3 635 186 133 0 0 chr11 6676140 6676170 -115167686 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 635 1518 164 93 75 chr11 6676235 6676413 -115167443 - MTD LTR MaLR -30 389 204 3 635 1213 41 0 0 chr11 6676413 6676560 -115167296 - B1_Mm SINE Alu 0 147 1 3 635 1518 164 93 75 chr11 6676560 6676756 -115167100 - MTD LTR MaLR -216 203 8 3 635 362 200 43 0 chr11 6676782 6676852 -115167004 - ID4_ SINE ID -9 74 2 3 635 21 0 0 0 chr11 6677459 6677480 -115166376 + AT_rich Low_complexity Low_complexity 1 21 0 3 635 2532 108 17 52 chr11 6677614 6678022 -115165834 + ORR1B1 LTR MaLR 1 394 0 3 635 922 178 21 5 chr11 6678031 6678217 -115165639 - MTD LTR MaLR -8 411 223 3 635 583 183 0 9 chr11 6678208 6678313 -115165543 - MTD LTR MaLR -315 104 1 3 635 387 0 0 0 chr11 6678423 6678466 -115165390 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 635 267 361 69 6 chr11 6679039 6679198 -115164658 + L1MDb LINE L1 2 170 -6239 3 635 552 315 60 33 chr11 6679214 6679390 -115164466 - RMER5 LTR ERV1 -72 462 286 3 635 279 0 0 0 chr11 6679390 6679421 -115164435 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 635 552 315 60 33 chr11 6679421 6679546 -115164310 - RMER5 LTR ERV1 -249 285 154 3 635 22 56 0 0 chr11 6679546 6679582 -115164274 + AT_rich Low_complexity Low_complexity 1 36 0 3 635 1122 185 229 0 chr11 6679831 6680123 -115163733 - MTD LTR MaLR -58 361 3 3 635 315 0 0 0 chr11 6680187 6680222 -115163634 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 635 1547 40 0 52 chr11 6680356 6680569 -115163287 - L1Md_F2 LINE L1 -4 6578 6377 3 635 300 364 14 0 chr11 6683462 6683605 -115160251 + (TATATG)n Simple_repeat Simple_repeat 3 147 0 3 635 348 277 0 78 chr11 6683621 6683813 -115160043 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 3 635 1067 209 24 0 chr11 6683896 6684102 -115159754 - B3 SINE B2 -3 213 3 3 635 301 220 17 0 chr11 6684104 6684163 -115159693 - B4A SINE B4 -62 230 171 3 635 427 117 39 0 chr11 6684530 6684607 -115159249 + B3 SINE B2 1 80 -136 3 636 2640 159 84 12 chr11 6685075 6685565 -115158291 - RLTR11A2 LTR ERVK 0 527 3 3 636 2684 132 42 34 chr11 6687049 6687527 -115156329 + RLTR45 LTR ERVK 1 482 0 3 636 3096 42 158 0 chr11 6687976 6688386 -115155470 - IAPLTR2_Mm LTR ERVK 0 475 1 3 636 438 69 0 0 chr11 6688428 6688486 -115155370 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 636 387 0 0 0 chr11 6688486 6688528 -115155328 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 636 393 75 0 0 chr11 6688971 6689024 -115154832 + (A)n Simple_repeat Simple_repeat 1 53 0 3 636 378 0 0 0 chr11 6689711 6689753 -115154103 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 636 279 261 65 43 chr11 6689800 6689984 -115153872 + L1_Mur3 LINE L1 1446 1633 -4247 3 636 1647 141 32 98 chr11 6690041 6690419 -115153437 - RLTR26 LTR ERVK -8 634 282 3 636 1028 155 0 0 chr11 6690419 6690593 -115153263 - RLTR26 LTR ERVK -468 174 1 3 636 579 198 9 0 chr11 6690647 6690753 -115153103 + B1_Mur1 SINE Alu 35 141 -8 3 636 243 61 0 0 chr11 6690757 6690790 -115153066 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 3 636 897 171 154 5 chr11 6690790 6690978 -115152878 + B3 SINE B2 1 216 0 3 636 1899 122 102 90 chr11 6691023 6691492 -115152364 + IAPLTR2_Mm LTR ERVK 1 475 0 3 636 458 146 67 86 chr11 6691493 6691598 -115152258 + IAPEz-int LTR ERVK 9 111 -6370 3 636 352 48 0 0 chr11 6691591 6691633 -115152223 + IAPEz-int LTR ERVK 217 258 -7323 3 636 251 222 0 0 chr11 6691635 6691680 -115152176 + RLTR27 LTR ERVK 231 275 -34 3 636 1144 115 0 0 chr11 6691680 6691836 -115152020 + IAPEz-int LTR ERVK 168 323 -6158 3 636 38888 42 1 3 chr11 6691837 6698062 -115145794 - L1Md_F2 LINE L1 0 6585 281 3 636 3355 70 0 20 chr11 6698179 6698619 -115145237 + IAPEz-int LTR ERVK 232 662 -5819 3 636 2719 67 0 3 chr11 6698619 6698962 -115144894 + IAPEz-int LTR ERVK 1359 1700 -4781 3 636 6488 62 11 17 chr11 6698957 6699791 -115144065 + IAPEz-int LTR ERVK 5653 6481 0 3 636 1860 110 102 111 chr11 6699791 6700270 -115143586 + IAPLTR2_Mm LTR ERVK 1 475 0 3 636 430 266 155 60 chr11 6700341 6700717 -115143139 + L1MD2 LINE L1 5816 6224 -135 3 636 2195 118 80 6 chr11 6700717 6701067 -115142789 + ORR1C1 LTR MaLR 1 376 -2 3 636 430 270 139 99 chr11 6701067 6701179 -115142677 + L1MD2 LINE L1 6225 6326 -33 3 636 1336 73 45 0 chr11 6701206 6701383 -115142473 + B2_Mm2 SINE B2 1 185 -10 3 636 2392 151 20 15 chr11 6702997 6703395 -115140461 + RLTR9D LTR ERVK 1 400 -3 3 636 5951 232 21 21 chr11 6703403 6704939 -115138917 + ETnERV-int LTR ERVK 3 1604 -1710 3 636 5390 251 29 21 chr11 6704952 6707191 -115136665 + ETnERV-int LTR ERVK 1845 4886 -2520 3 636 4519 127 12 9 chr11 6707191 6707643 -115136213 + ETnERV-int LTR ERVK 5553 6002 -1404 3 636 414 0 0 0 chr11 6707643 6707689 -115136167 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 636 4519 196 22 41 chr11 6707689 6708158 -115135698 + ETnERV-int LTR ERVK 6003 6226 -1180 3 636 2442 132 33 23 chr11 6708452 6708848 -115135008 + RLTR9D LTR ERVK 1 400 -3 3 636 1568 194 126 0 chr11 6709131 6709485 -115134371 - MTD LTR MaLR 0 419 21 3 636 405 0 0 0 chr11 6709485 6709530 -115134326 + (CAAAC)n Simple_repeat Simple_repeat 4 48 0 3 636 1568 194 126 0 chr11 6709530 6709541 -115134315 - MTD LTR MaLR -399 20 9 3 636 306 321 57 0 chr11 6709687 6709827 -115134029 - L1MC3 LINE L1 -1263 6522 6375 3 636 299 299 0 0 chr11 6709861 6709938 -115133918 - RMER5 LTR ERV1 -15 519 443 3 636 398 20 0 19 chr11 6709981 6710033 -115133823 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 636 309 262 0 0 chr11 6710037 6710098 -115133758 - ID4 SINE ID -13 70 10 3 636 768 42 0 0 chr11 6710181 6710277 -115133579 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 3 636 1630 271 29 5 chr11 6710292 6710678 -115133178 - Lx6 LINE L1 -20 7440 7046 3 636 687 297 68 21 chr11 6710682 6711019 -115132837 - RMER5 LTR ERV1 -149 385 33 3 636 508 206 29 0 chr11 6711474 6711576 -115132280 - B3 SINE B2 -2 214 110 3 636 578 296 12 0 chr11 6711610 6711782 -115132074 + B4A SINE B4 2 175 -117 3 636 363 103 86 29 chr11 6711795 6711865 -115131991 + ORR1D2 LTR MaLR 26 99 -271 3 636 624 231 0 43 chr11 6712632 6712738 -115131118 - B3 SINE B2 -82 134 34 3 636 1719 178 86 20 chr11 6712738 6713133 -115130723 - MTC LTR MaLR 0 421 1 3 636 624 231 0 43 chr11 6713133 6713166 -115130690 - B3 SINE B2 -183 33 1 3 636 483 226 53 35 chr11 6713182 6713352 -115130504 - Lx7 LINE L1 0 7696 7524 3 636 369 0 0 0 chr11 6713354 6713395 -115130461 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 636 3256 189 93 2 chr11 6713464 6714079 -115129777 + Lx7 LINE L1 6001 6671 -1025 3 636 1164 145 50 5 chr11 6714076 6714277 -115129579 - Lx7 LINE L1 -807 6889 6680 3 636 1117 250 120 18 chr11 6714275 6714609 -115129247 - RMER1B Other Other -668 398 31 3 636 255 191 0 0 chr11 6714926 6714968 -115128888 - Lx8 LINE L1 -755 6718 6677 3 636 1524 152 113 62 chr11 6715100 6715437 -115128419 - ORR1B1 LTR MaLR 0 394 41 3 636 1123 206 296 18 chr11 6715606 6715930 -115127926 + MTD LTR MaLR 3 416 -3 3 636 278 287 34 6 chr11 6715943 6716118 -115127738 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 636 188 200 0 16 chr11 6716129 6716190 -115127666 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 636 2820 116 33 39 chr11 6716346 6716831 -115127025 - RLTR45 LTR ERVK 0 482 1 3 636 510 61 0 0 chr11 6716857 6716923 -115126933 + (TTTC)n Simple_repeat Simple_repeat 1 66 0 3 636 781 74 186 16 chr11 6716923 6717036 -115126820 - B1_Mus1 SINE Alu -12 136 1 3 636 351 246 172 40 chr11 6717037 6717213 -115126643 - L1MA5A LINE L1 -470 5827 5558 3 636 1984 188 24 95 chr11 6717214 6717692 -115126164 - RMER15 LTR ERVL -1 574 129 3 636 1862 194 111 0 chr11 6717692 6718069 -115125787 + MTD LTR MaLR 1 419 0 3 636 1984 188 24 95 chr11 6718069 6718138 -115125718 - RMER15 LTR ERVL -447 128 66 3 636 8106 56 4 7 chr11 6718146 6719555 -115124301 - L1Md_F2 LINE L1 0 6582 5178 4 636 18242 70 4 8 chr11 6719552 6722646 -115121210 - L1Md_F2 LINE L1 -2322 3561 480 4 636 373 70 0 17 chr11 6722646 6722704 -115121152 - L1VL1 LINE L1 -6348 74 18 4 636 299 233 0 0 chr11 6722804 6722864 -115120992 - RMER15 LTR ERVL -515 60 1 3 636 646 277 46 3 chr11 6722899 6723118 -115120738 - L1MA5A LINE L1 -745 5555 5333 3 636 281 110 38 65 chr11 6723327 6723512 -115120344 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 636 233 57 0 28 chr11 6723930 6723966 -115119890 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 4 636 244 64 0 41 chr11 6725122 6725171 -115118685 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 636 1004 23 0 8 chr11 6725175 6725308 -115118548 - B1_Mm SINE Alu 0 147 16 4 636 709 168 28 12 chr11 6725310 6725474 -115118382 - B2_Mm2 SINE B2 -26 167 2 4 636 207 246 18 0 chr11 6727611 6727668 -115116188 - L2 LINE L2 -1156 2263 2206 4 636 26 0 0 0 chr11 6728266 6728292 -115115564 + AT_rich Low_complexity Low_complexity 1 26 0 4 636 1215 67 0 0 chr11 6728608 6728787 -115115069 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 636 7948 71 27 17 chr11 6728896 6730220 -115113636 - L1_Mus3 LINE L1 -1 6637 5313 4 636 199 0 65 0 chr11 6730223 6730254 -115113602 + (TTC)n Simple_repeat Simple_repeat 1 33 0 4 636 1078 120 48 21 chr11 6730254 6730441 -115113415 - B2_Mm2 SINE B2 0 195 4 4 636 883 182 0 0 chr11 6730446 6730594 -115113262 - B1_Mur4 SINE Alu -2 148 1 4 636 401 324 92 8 chr11 6730623 6730863 -115112993 - Tigger7 DNA MER2_type -2162 329 70 4 636 21 0 0 0 chr11 6732327 6732348 -115111508 + GC_rich Low_complexity Low_complexity 1 21 0 4 636 225 293 13 13 chr11 6732767 6732843 -115111013 - MTEb LTR MaLR -6 373 298 4 636 268 152 15 15 chr11 6734569 6734636 -115109220 + GA-rich Low_complexity Low_complexity 2 68 0 4 636 240 35 0 0 chr11 6735583 6735612 -115108244 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 636 264 331 0 34 chr11 6736830 6736977 -115106879 + CT-rich Low_complexity Low_complexity 6 147 0 4 636 191 255 0 38 chr11 6737490 6737543 -115106313 - L3 LINE CR1 -3548 941 891 4 636 3290 182 54 25 chr11 6737925 6738680 -115105176 + RMER19C LTR ERVK 1 900 -2 4 636 940 195 102 10 chr11 6739162 6739359 -115104497 + B3 SINE B2 1 215 -1 4 636 378 0 0 0 chr11 6739468 6739510 -115104346 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 4 636 585 105 0 0 chr11 6739524 6739610 -115104246 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 636 884 96 0 0 chr11 6739621 6739746 -115104110 - B2_Mm2 SINE B2 -70 125 1 4 636 398 215 0 0 chr11 6740134 6740213 -115103643 + B4A SINE B4 8 86 -206 4 636 306 209 18 37 chr11 6740213 6740243 -115103613 + BC1_Mm scRNA scRNA 8 114 -38 4 636 262 203 24 71 chr11 6740248 6740375 -115103481 + Lx6 LINE L1 7314 7434 -26 4 636 551 305 73 10 chr11 6740383 6740575 -115103281 + B4A SINE B4 83 286 -6 4 636 548 125 10 0 chr11 6740617 6740713 -115103143 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 636 221 0 0 33 chr11 6741146 6741176 -115102680 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 4 636 1205 55 0 0 chr11 6741176 6741321 -115102535 - B1_Mus2 SINE Alu -1 146 2 4 636 21 36 0 0 chr11 6742899 6742927 -115100929 + AT_rich Low_complexity Low_complexity 1 28 0 4 636 21 36 0 0 chr11 6743077 6743105 -115100751 + AT_rich Low_complexity Low_complexity 1 28 0 4 636 21 36 0 0 chr11 6743120 6743148 -115100708 + AT_rich Low_complexity Low_complexity 1 28 0 4 636 386 245 261 0 chr11 6743370 6743639 -115100217 - MTE2b LTR MaLR -7 372 5 4 636 451 323 122 28 chr11 6743813 6744068 -115099788 + RMER5 LTR ERV1 256 534 0 4 636 263 306 162 0 chr11 6744460 6744620 -115099236 + L1M4b LINE L1 2332 2517 -4817 4 636 667 295 82 39 chr11 6744867 6745146 -115098710 + B4A SINE B4 2 292 0 4 636 240 307 118 10 chr11 6745255 6745357 -115098499 - MER54A LTR ERVL -513 388 276 4 636 252 186 0 33 chr11 6745352 6745413 -115098443 - MER54A LTR ERVL -835 66 8 4 636 4263 55 2 8 chr11 6745413 6745928 -115097928 + LTRIS3 LTR ERV1 1 512 0 4 636 907 320 24 17 chr11 6745935 6746354 -115097502 + L1M4b LINE L1 3163 3584 -3422 4 636 1019 193 10 5 chr11 6746383 6746576 -115097280 - URR1B DNA MER1_type -24 201 8 4 636 2864 91 33 5 chr11 6747016 6747414 -115096442 + RLTR9E LTR ERVK 1 409 0 4 636 18003 199 39 31 chr11 6747415 6753152 -115090704 + ETnERV2-int LTR ERVK 2 6429 -977 4 636 544 66 0 38 chr11 6753362 6753441 -115090415 + ETnERV2-int LTR ERVK 7331 7406 0 4 636 2747 83 24 29 chr11 6753441 6753852 -115090004 + RLTR9E LTR ERVK 1 409 0 4 636 670 240 134 46 chr11 6753852 6754150 -115089706 + L1M4b LINE L1 4394 4692 -2314 4 636 290 280 171 57 chr11 6754320 6754388 -115089468 + L1M4b LINE L1 5148 5230 -1776 4 636 2045 70 0 0 chr11 6754388 6754646 -115089210 + L1_Mus1 LINE L1 6310 6567 0 4 636 290 280 171 57 chr11 6754646 6754876 -115088980 + L1M4b LINE L1 5231 5480 -1526 4 636 498 111 12 12 chr11 6755285 6755367 -115088489 + ORR1C2 LTR MaLR 303 384 0 4 636 330 296 28 43 chr11 6755367 6755508 -115088348 - ID_B1 SINE B4 -60 164 26 4 636 935 299 37 50 chr11 6755615 6756017 -115087839 - MT2A LTR ERVL -134 399 3 4 636 274 269 15 15 chr11 6756022 6756090 -115087766 + L1MA7 LINE L1 5585 5652 -531 4 636 670 241 145 38 chr11 6756481 6756835 -115087021 + L1MA7 LINE L1 5659 6056 -133 4 636 7807 63 7 8 chr11 6756898 6757915 -115085941 - L1_Mus1 LINE L1 -1 6566 5551 4 636 1006 183 320 18 chr11 6758096 6758380 -115085476 - ORR1D1 LTR MaLR 0 374 5 4 636 424 267 8 8 chr11 6758784 6758901 -115084955 + PB1D10 SINE Alu 1 117 0 4 636 236 30 0 29 chr11 6759772 6759806 -115084050 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 4 636 677 287 50 0 chr11 6760725 6760927 -115082929 + ORR1E LTR MaLR 4 215 -144 4 636 593 252 66 18 chr11 6760998 6761251 -115082605 + ORR1E-int LTR MaLR 49 349 -1231 4 636 597 236 0 8 chr11 6761251 6761379 -115082477 + RSINE1 SINE B4 3 129 -36 4 636 216 0 0 0 chr11 6761391 6761415 -115082441 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 636 180 0 0 0 chr11 6761819 6761839 -115082017 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 4 636 378 235 19 10 chr11 6762351 6762454 -115081402 - MTD LTR MaLR -94 325 222 4 636 22 0 0 0 chr11 6762504 6762526 -115081330 + AT_rich Low_complexity Low_complexity 1 22 0 4 636 1386 128 13 0 chr11 6762529 6762755 -115081101 - Lx2 LINE L1 -6 6991 6763 4 636 5315 101 17 9 chr11 6762755 6763533 -115080323 - Lx2 LINE L1 -365 6632 5849 4 636 633 287 18 0 chr11 6763533 6763700 -115080156 - MTD LTR MaLR -208 211 42 4 636 1655 202 31 49 chr11 6763710 6764100 -115079756 + MTD LTR MaLR 37 419 0 4 636 223 306 16 0 chr11 6764136 6764198 -115079658 + B3A SINE B2 97 159 -39 4 636 450 0 0 0 chr11 6764214 6764264 -115079592 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 636 333 0 0 0 chr11 6764279 6764316 -115079540 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 636 1241 266 80 28 chr11 6764359 6764757 -115079099 + ORR1E-int LTR MaLR 615 1033 -547 4 636 2136 125 29 21 chr11 6765214 6765284 -115078572 - ORR1C1 LTR MaLR 0 378 310 4 636 2936 6 0 0 chr11 6765284 6765606 -115078250 - RLTRETN_Mm LTR ERVK 0 322 1 4 636 2136 125 29 21 chr11 6765606 6765910 -115077946 - ORR1C1 LTR MaLR -69 309 1 4 636 751 220 0 7 chr11 6766561 6766703 -115077153 - B1_Mur1 SINE Alu -6 143 3 4 636 520 237 37 31 chr11 6767873 6768034 -115075822 + MLT2C2 LTR ERVL 18 179 -285 4 636 1806 223 172 28 chr11 6769165 6769701 -115074155 - RMER20B LTR ERVK -14 613 1 4 636 1547 179 62 23 chr11 6771177 6771485 -115072371 + L1_Rod LINE L1 5396 5715 -132 4 636 830 197 33 11 chr11 6771499 6771679 -115072177 + Lx9 LINE L1 7340 7523 -121 4 636 2360 207 39 93 chr11 6771752 6772443 -115071413 - Lx7 LINE L1 -4 7692 7039 4 636 479 118 85 0 chr11 6772505 6772658 -115071198 + GA-rich Low_complexity Low_complexity 1 166 0 4 636 5130 192 65 4 chr11 6773003 6774021 -115069835 - Lx7 LINE L1 -676 7020 5941 4 636 405 0 0 0 chr11 6775843 6775888 -115067968 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 636 1108 56 7 7 chr11 6775888 6776024 -115067832 - B1_Mus2 SINE Alu -10 137 1 4 636 836 283 92 36 chr11 6776068 6776457 -115067399 - L1MC3 LINE L1 -489 7296 6886 4 636 505 299 29 45 chr11 6776512 6776782 -115067074 - L1MC3 LINE L1 -2037 5958 5693 4 636 266 300 58 39 chr11 6776842 6776998 -115066858 - Lx8 LINE L1 -26 7447 7289 4 636 1585 220 97 3 chr11 6777037 6777420 -115066436 - MTD LTR MaLR 0 419 1 4 636 2796 221 146 112 chr11 6777420 6778636 -115065220 - MTD-int LTR MaLR 0 1258 2 4 636 437 156 76 11 chr11 6778637 6778743 -115065113 - MTD LTR MaLR -14 405 257 4 636 2001 112 62 87 chr11 6778743 6779083 -115064773 + ORR1B1 LTR MaLR 3 338 -56 4 636 3152 56 26 3 chr11 6779083 6779474 -115064382 - MTB LTR MaLR 0 400 1 4 636 2001 112 62 87 chr11 6779474 6779535 -115064321 + ORR1B1 LTR MaLR 339 394 0 4 636 556 198 483 0 chr11 6779535 6779746 -115064110 - MTD LTR MaLR -106 313 1 4 636 388 309 72 66 chr11 6779991 6780310 -115063546 - RLTR12B LTR ERVK -189 339 19 4 636 286 315 0 0 chr11 6780317 6780406 -115063450 - Lx8 LINE L1 -359 7114 7026 4 636 507 219 58 64 chr11 6780429 6780585 -115063271 - Lx8 LINE L1 -735 6738 6584 4 636 425 291 136 45 chr11 6780580 6781195 -115062661 - L1MC3 LINE L1 -2087 5698 5024 4 636 1636 211 34 6 chr11 6781204 6781556 -115062300 - MTD LTR MaLR -37 382 21 4 636 1343 234 11 3 chr11 6781743 6782030 -115061826 + ORR1D2 LTR MaLR 1 289 -81 4 636 265 273 108 0 chr11 6782083 6782197 -115061659 - Lx7 LINE L1 -83 5764 5625 4 636 328 262 28 37 chr11 6782248 6782355 -115061501 - L1MC3 LINE L1 -1359 4787 4682 4 636 373 221 126 11 chr11 6782361 6782448 -115061408 + PB1D9 SINE Alu 24 120 0 4 636 227 54 27 0 chr11 6782449 6782486 -115061370 + (CAAAC)n Simple_repeat Simple_repeat 1 38 0 4 636 1409 134 13 5 chr11 6782618 6782842 -115061014 - URR1A DNA MER1_type 0 226 1 4 636 394 307 83 19 chr11 6782882 6783098 -115060758 + RMER15 LTR ERVL 278 507 -68 4 636 2460 136 12 15 chr11 6783143 6783553 -115060303 + RLTR9E LTR ERVK 1 409 0 4 636 677 153 97 0 chr11 6783594 6783718 -115060138 - B1_Mus2 SINE Alu -11 136 1 4 636 955 270 75 21 chr11 6783756 6784131 -115059725 - L1MC3 LINE L1 -2714 3432 3038 4 636 792 49 60 25 chr11 6784335 6784650 -115059206 + (TG)n Simple_repeat Simple_repeat 1 326 0 4 636 664 42 70 29 chr11 6784667 6784839 -115059017 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 636 1109 294 93 51 chr11 6785429 6785999 -115057857 + L1MD2 LINE L1 5509 6102 -257 4 636 471 63 0 0 chr11 6786647 6786710 -115057146 + (TATG)n Simple_repeat Simple_repeat 2 64 0 4 636 1436 119 32 9 chr11 6786734 6786954 -115056902 - URR1B DNA MER1_type 0 225 1 4 636 1153 82 0 6 chr11 6787067 6787217 -115056639 + B2_Mm2 SINE B2 3 152 -43 4 636 450 0 0 0 chr11 6787217 6787267 -115056589 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 636 211 302 0 0 chr11 6787708 6787761 -115056095 + RSINE1 SINE B4 34 86 -79 4 636 509 185 98 23 chr11 6787725 6787858 -115055998 + B2_Mm2 SINE B2 50 192 -3 4 636 440 248 58 0 chr11 6787905 6788042 -115055814 + RMER15-int LTR ERVL 1464 1608 -3391 4 636 304 287 53 11 chr11 6788246 6788341 -115055515 + ORR1D2 LTR MaLR 107 205 -165 4 636 573 15 0 0 chr11 6788341 6788407 -115055449 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 5 636 374 292 94 38 chr11 6788466 6788626 -115055230 + RMER15 LTR ERVL 359 527 -48 4 636 260 238 74 8 chr11 6788646 6788758 -115055098 + ORR1D2 LTR MaLR 45 152 -226 5 636 639 11 0 75 chr11 6789521 6789615 -115054241 + L1_Mus2 LINE L1 6480 6566 0 5 636 272 234 77 13 chr11 6790520 6790598 -115053258 - BGLII_B LTR ERVK -27 414 332 5 636 786 248 25 113 chr11 6790656 6791029 -115052827 - RLTR11B LTR ERVK -181 347 4 5 636 443 295 20 5 chr11 6791884 6792054 -115051802 + MLT2D LTR ERVL 8 181 -373 5 636 1384 235 51 113 chr11 6792073 6792272 -115051584 + MTD LTR MaLR 1 209 -210 5 636 1238 54 0 0 chr11 6792272 6792419 -115051437 + B1_Mm SINE Alu 1 147 0 5 636 1384 235 51 113 chr11 6792419 6792458 -115051398 + MTD LTR MaLR 210 210 -209 5 636 441 0 0 0 chr11 6792458 6792507 -115051349 + (CAAG)n Simple_repeat Simple_repeat 2 50 0 5 636 1384 235 51 113 chr11 6792507 6792699 -115051157 + MTD LTR MaLR 210 405 -14 5 636 251 325 68 12 chr11 6792746 6792908 -115050948 + MLT2D LTR ERVL 381 551 -5 5 636 1167 250 39 45 chr11 6793025 6793406 -115050450 - MTE2b LTR MaLR 0 379 1 5 636 284 268 0 27 chr11 6794083 6794156 -115049700 + MER57A-int LTR ERV1 5823 5893 -294 5 636 579 29 0 0 chr11 6796297 6796366 -115047490 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 636 418 211 367 0 chr11 6796370 6796498 -115047358 + B3A SINE B2 5 179 -19 5 636 1639 292 125 47 chr11 6797030 6798047 -115045809 + L1MC3 LINE L1 6483 7578 -207 5 636 1186 100 0 7 chr11 6802013 6802286 -115041570 + (GGA)n Simple_repeat Simple_repeat 1 271 0 5 636 389 20 20 0 chr11 6802616 6802666 -115041190 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 636 7969 50 5 12 chr11 6803672 6804244 -115039612 - L1_Mus2 LINE L1 0 6566 6001 5 636 3411 30 8 0 chr11 6804244 6804637 -115039219 - MTA_Mm LTR MaLR 0 396 1 5 636 7969 65 4 8 chr11 6804637 6805253 -115038603 - L1_Mus2 LINE L1 -566 6000 5385 5 636 473 280 16 8 chr11 6806355 6806481 -115037375 - ID_B1 SINE B4 -7 217 91 5 636 326 272 206 28 chr11 6806533 6806892 -115036964 - L1MA7 LINE L1 -1 6290 5868 5 636 468 0 0 0 chr11 6807170 6807222 -115036634 + (CAA)n Simple_repeat Simple_repeat 1 52 0 5 636 357 298 246 0 chr11 6807223 6807337 -115036519 + RSINE1 SINE B4 3 144 -21 5 636 243 0 0 0 chr11 6807344 6807371 -115036485 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 636 503 286 19 6 chr11 6807378 6807540 -115036316 + L1M2 LINE L1 5484 5647 -644 5 636 1428 231 7 86 chr11 6807565 6808019 -115035837 - Lx LINE L1 0 7696 7279 5 636 1690 181 40 0 chr11 6808017 6808338 -115035518 - Lx LINE L1 -96 6558 6225 5 636 2736 138 7 2 chr11 6808341 6808756 -115035100 + MTC LTR MaLR 3 419 -2 5 636 10961 166 25 40 chr11 6808774 6809064 -115034792 - L1_Mur3 LINE L1 -57 5823 5533 5 636 274 116 0 0 chr11 6809064 6809107 -115034749 - MTB_Mm LTR MaLR -364 43 1 5 636 10961 166 25 40 chr11 6809107 6810935 -115032921 - L1_Mur3 LINE L1 -57 5532 3695 5 636 1132 189 134 0 chr11 6810935 6811173 -115032683 + MTD LTR MaLR 102 371 -48 5 636 1865 225 26 22 chr11 6811276 6811413 -115032443 - Lx LINE L1 -198 5966 5807 5 636 1338 147 65 8 chr11 6811413 6811526 -115032330 - Lx LINE L1 -7 6647 6536 5 636 342 67 0 0 chr11 6811526 6811571 -115032285 + (CCCA)n Simple_repeat Simple_repeat 1 45 0 5 636 1338 147 65 8 chr11 6811571 6811704 -115032152 - Lx LINE L1 -119 6535 6388 5 636 23336 160 9 13 chr11 6811704 6815470 -115028386 - Lx LINE L1 -77 5806 2055 5 79 3265 53 5 2 chr11 6815470 6815865 -115027991 + MTA_Mm LTR MaLR 1 396 0 5 637 23336 160 9 13 chr11 6815865 6816283 -115027573 - Lx LINE L1 -3829 2054 1639 5 637 310 175 0 0 chr11 6816283 6816346 -115027510 + RMER6C LTR ERVK 554 616 -74 5 637 1090 115 249 0 chr11 6816343 6816552 -115027304 - RMER6C LTR ERVK -423 267 7 5 637 1152 225 143 25 chr11 6816725 6817040 -115026816 - ORR1D2 LTR MaLR -7 363 12 5 637 976 120 107 25 chr11 6817039 6817236 -115026620 - ORR1D2-int LTR MaLR -15 1355 1143 5 637 346 264 16 40 chr11 6818309 6818435 -115025421 + L1M5 LINE L1 2793 2915 -3231 5 637 586 234 60 76 chr11 6818615 6818800 -115025056 + B3A SINE B2 1 182 -16 5 637 459 133 0 0 chr11 6818807 6818882 -115024974 - MTD LTR MaLR -333 86 12 5 637 239 50 0 48 chr11 6818907 6818949 -115024907 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 637 925 166 11 6 chr11 6819456 6819632 -115024224 - URR1A DNA MER1_type 0 226 50 5 637 255 42 83 0 chr11 6819939 6819987 -115023869 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 5 637 501 231 182 0 chr11 6820453 6820596 -115023260 - B3 SINE B2 -47 169 1 5 637 317 353 25 0 chr11 6820651 6820770 -115023086 + RSINE1 SINE B4 3 124 -41 5 637 26 0 0 0 chr11 6820828 6820854 -115023002 + AT_rich Low_complexity Low_complexity 1 26 0 5 637 1445 256 42 71 chr11 6820952 6821470 -115022386 - RMER5 LTR ERV1 -31 503 1 5 637 888 316 102 58 chr11 6821626 6822107 -115021749 + MER21B LTR ERV1 3 506 -357 5 637 3266 61 0 0 chr11 6822107 6822503 -115021353 + MTA_Mm LTR MaLR 1 396 0 5 637 888 316 102 58 chr11 6822503 6822519 -115021337 + MER21B LTR ERV1 507 522 -341 5 637 1297 219 70 37 chr11 6822662 6822748 -115021108 + ORR1D2 LTR MaLR 3 103 -267 5 637 2152 153 13 53 chr11 6822748 6823141 -115020715 + ORR1C1 LTR MaLR 2 378 0 5 637 1297 219 70 37 chr11 6823141 6823409 -115020447 + ORR1D2 LTR MaLR 104 369 -1 5 637 1177 236 57 12 chr11 6825083 6825417 -115018439 + ORR1D2 LTR MaLR 18 366 -4 5 637 414 0 0 0 chr11 6826471 6826517 -115017339 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 5 637 682 164 27 41 chr11 6827264 6827403 -115016453 + B1_Mus2 SINE Alu 2 140 -7 5 637 180 111 0 0 chr11 6827403 6827430 -115016426 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 5 637 730 268 36 135 chr11 6827714 6828128 -115015728 - MTD LTR MaLR -42 377 5 5 637 249 250 67 93 chr11 6828169 6828319 -115015537 + Lx8 LINE L1 7318 7463 -10 5 637 309 82 0 0 chr11 6829718 6829767 -115014089 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 637 227 292 14 0 chr11 6830184 6830256 -115013600 - MLT1F LTR MaLR -9 539 467 5 637 450 0 0 0 chr11 6830305 6830355 -115013501 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 637 342 0 0 0 chr11 6830387 6830425 -115013431 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 637 2659 257 88 66 chr11 6831251 6832095 -115011761 + Lx9 LINE L1 6565 7402 -242 5 637 1173 88 48 37 chr11 6832095 6832283 -115011573 - B2_Mm2 SINE B2 -5 190 1 5 637 2659 257 88 66 chr11 6832283 6832361 -115011495 + Lx9 LINE L1 7403 7497 -147 5 637 183 42 0 0 chr11 6832361 6832385 -115011471 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 637 2659 257 88 66 chr11 6832385 6832512 -115011344 + Lx9 LINE L1 7498 7639 -5 5 637 1665 279 44 107 chr11 6832511 6832979 -115010877 + L1M2 LINE L1 4445 4838 -1305 5 637 472 242 80 57 chr11 6832979 6833154 -115010702 - B3A SINE B2 -16 182 4 5 637 1065 299 61 36 chr11 6833154 6833675 -115010181 + L1M2 LINE L1 4838 5371 -772 5 637 351 0 0 0 chr11 6833711 6833750 -115010106 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 637 852 226 84 57 chr11 6833752 6834101 -115009755 - MT2A LTR ERVL -99 502 1 5 637 3749 262 85 29 chr11 6834102 6835541 -115008315 + Lx8 LINE L1 5338 6865 -608 5 637 212 293 49 0 chr11 6835675 6835757 -115008099 - L2a LINE L2 -4 3422 3337 5 637 35 24 0 0 chr11 6836004 6836046 -115007810 + AT_rich Low_complexity Low_complexity 1 42 0 5 637 670 279 129 19 chr11 6836096 6836352 -115007504 - B4A SINE B4 -8 284 1 5 637 393 22 0 0 chr11 6836404 6836450 -115007406 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 5 637 211 210 14 151 chr11 6836541 6836600 -115007256 + B1F SINE Alu 28 78 -71 5 637 1918 188 55 177 chr11 6836600 6837181 -115006675 + RLTR18B LTR ERVK 1 510 -2 5 637 211 210 14 151 chr11 6837181 6837194 -115006662 + B1F SINE Alu 79 90 -59 5 637 1031 244 127 12 chr11 6837360 6837700 -115006156 + MTEb LTR MaLR 1 379 0 5 637 616 225 6 6 chr11 6838369 6838484 -115005372 + polypurine Low_complexity Low_complexity 1 116 0 5 637 1371 62 0 0 chr11 6838484 6838662 -115005194 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 637 616 225 6 6 chr11 6838662 6838725 -115005131 + polypurine Low_complexity Low_complexity 117 178 0 5 637 885 0 0 46 chr11 6840237 6840368 -115003488 + (CCAA)n Simple_repeat Simple_repeat 2 126 0 5 637 219 36 0 0 chr11 6840381 6840409 -115003447 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 5 637 316 213 20 39 chr11 6840738 6840836 -115003020 - ID4_ SINE ID -47 105 14 5 637 380 329 42 24 chr11 6841841 6842053 -115001803 - L1MC4 LINE L1 -965 7077 6862 5 637 477 0 0 0 chr11 6842883 6842936 -115000920 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 637 629 226 84 0 chr11 6842948 6843026 -115000830 - B3A SINE B2 -29 169 91 5 637 1659 162 115 6 chr11 6843026 6843208 -115000648 - RMER17C LTR ERVK 0 410 214 5 637 351 0 0 0 chr11 6843208 6843247 -115000609 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 637 1659 162 115 6 chr11 6843247 6843430 -115000426 - RMER17C LTR ERVK -197 213 5 5 637 629 226 84 0 chr11 6843430 6843506 -115000350 - B3A SINE B2 -108 90 3 5 637 274 283 19 39 chr11 6843599 6843702 -115000154 - L1MD3 LINE L1 -14 7981 7881 5 637 1001 271 136 34 chr11 6843896 6844545 -114999311 + L1M3 LINE L1 2684 3398 -2742 5 637 926 65 0 0 chr11 6844545 6844668 -114999188 + B1_Mus1 SINE Alu 14 136 -12 5 637 243 61 0 0 chr11 6844669 6844702 -114999154 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 637 846 271 32 42 chr11 6844702 6844987 -114998869 + L1M3 LINE L1 3411 3692 -2448 5 637 622 334 71 39 chr11 6845039 6845403 -114998453 + MER70A LTR ERVL 56 431 -41 5 637 448 277 98 50 chr11 6845550 6845888 -114997968 + L1M3 LINE L1 3698 4051 -2089 5 637 282 336 0 9 chr11 6845889 6845997 -114997859 - MER82 DNA MER2_type -324 329 223 5 637 5491 68 31 16 chr11 6846425 6847162 -114996694 - L1_Mus4 LINE L1 0 6636 5889 5 637 918 146 21 0 chr11 6847169 6847313 -114996543 - B1_Mur1 SINE Alu -1 148 2 5 637 1096 194 10 15 chr11 6847334 6847538 -114996318 - B3 SINE B2 -13 203 1 5 637 335 278 0 65 chr11 6848218 6848341 -114995515 - MER82 DNA MER2_type -512 141 27 5 637 518 171 102 28 chr11 6848541 6848649 -114995207 - PB1D9 SINE Alu -3 117 2 5 637 1853 166 64 67 chr11 6850415 6850612 -114993244 - ORR1D1 LTR MaLR 0 374 180 5 637 732 103 0 0 chr11 6850612 6850719 -114993137 + (GGGA)n Simple_repeat Simple_repeat 3 109 0 5 637 1853 166 64 67 chr11 6850719 6850896 -114992960 - ORR1D1 LTR MaLR -195 179 1 5 637 570 114 0 0 chr11 6850904 6850992 -114992864 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 5 637 1144 62 20 0 chr11 6850992 6851138 -114992718 - B1_Mur4 SINE Alu 0 150 2 5 637 519 17 0 0 chr11 6851138 6851198 -114992658 + (TTTTC)n Simple_repeat Simple_repeat 3 62 0 6 637 231 36 0 0 chr11 6851228 6851256 -114992600 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 637 836 10 10 0 chr11 6851795 6851896 -114991960 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 6 637 729 150 0 0 chr11 6852258 6852391 -114991465 + CT-rich Low_complexity Low_complexity 2 134 0 6 637 249 33 0 0 chr11 6853258 6853288 -114990568 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 637 765 0 0 0 chr11 6853597 6853682 -114990174 + (CAG)n Simple_repeat Simple_repeat 1 85 0 6 637 337 264 14 0 chr11 6853932 6854004 -114989852 - B1F SINE Alu -21 128 56 6 637 3351 25 8 20 chr11 6854248 6854649 -114989207 - MTA_Mm LTR MaLR 0 396 1 6 637 7868 65 16 70 chr11 6854649 6855810 -114988046 - MTA_Mm-int LTR MaLR 0 1098 1 6 637 3140 45 42 0 chr11 6855810 6856190 -114987666 - MTA_Mm LTR MaLR 0 396 1 6 637 377 301 0 37 chr11 6856278 6856385 -114987471 - PB1D10 SINE Alu -13 104 2 6 637 24 77 0 0 chr11 6856424 6856476 -114987380 + AT_rich Low_complexity Low_complexity 1 52 0 6 637 14354 80 12 12 chr11 6857682 6859805 -114984051 - L1VL2 LINE L1 -626 2989 867 6 637 333 0 0 0 chr11 6859805 6859842 -114984014 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 637 4367 90 88 56 chr11 6859842 6860377 -114983479 - L1VL2 LINE L1 -5469 866 310 6 637 324 216 92 33 chr11 6860382 6860472 -114983384 - Lx9 LINE L1 -4 7640 7545 6 637 4415 44 74 0 chr11 6860472 6860997 -114982859 + LTRIS2 LTR ERV1 1 564 0 6 637 324 216 92 33 chr11 6860997 6861059 -114982797 - Lx9 LINE L1 -100 7544 7479 6 637 2473 160 5 5 chr11 6861057 6861441 -114982415 - RMER1B Other Other -302 764 381 6 637 4372 175 92 7 chr11 6861441 6862385 -114981471 - RLTR25B LTR ERVK 0 1028 5 6 637 888 272 97 0 chr11 6862389 6862646 -114981210 - RMER1A Other Other -706 324 43 6 637 26 0 0 0 chr11 6862764 6862790 -114981066 + AT_rich Low_complexity Low_complexity 1 26 0 6 637 823 122 13 13 chr11 6863135 6863284 -114980572 + (GGGA)n Simple_repeat Simple_repeat 1 149 0 6 637 241 333 79 38 chr11 6863314 6863604 -114980252 + L1MA9 LINE L1 5972 6273 -39 6 637 621 252 40 13 chr11 6863943 6864092 -114979764 + B3A SINE B2 1 153 -45 6 637 402 57 0 0 chr11 6864104 6864157 -114979699 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 637 415 249 67 14 chr11 6864343 6864473 -114979383 + MLT1A0 LTR MaLR 241 373 -17 6 637 553 284 40 6 chr11 6865091 6865268 -114978588 - MLT1B LTR MaLR -138 252 70 6 637 389 350 43 24 chr11 6865269 6865480 -114978376 + ORR1E LTR MaLR 1 215 -144 6 637 404 19 19 0 chr11 6865582 6865635 -114978221 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 637 936 249 77 77 chr11 6865640 6866019 -114977837 + MTEa LTR MaLR 1 379 0 6 637 4805 275 37 11 chr11 6866577 6867923 -114975933 + ERVL-B4-int LTR ERVL 3812 5192 -522 6 637 574 278 80 1 chr11 6867972 6868200 -114975656 + MLT2C2 LTR ERVL 3 253 -211 6 637 965 261 26 142 chr11 6868200 6868287 -114975569 + MTE2a LTR MaLR 1 75 -304 6 637 345 62 0 0 chr11 6868287 6868335 -114975521 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 637 965 261 26 142 chr11 6868335 6868676 -114975180 + MTE2a LTR MaLR 76 379 0 6 637 441 265 7 68 chr11 6868677 6868823 -114975033 + MTE2a-int LTR MaLR 3 139 -1441 6 637 242 312 19 96 chr11 6868980 6869136 -114974720 + MTE2a-int LTR MaLR 152 295 -1285 6 637 649 244 46 164 chr11 6869148 6869472 -114974384 + MTE2a-int LTR MaLR 360 645 -613 6 637 636 253 146 40 chr11 6869469 6869716 -114974140 + MTE2a-int LTR MaLR 1094 1366 -214 6 637 257 307 30 125 chr11 6870156 6870420 -114973436 + B4 SINE B4 6 248 -44 6 637 33787 73 12 1 chr11 6870423 6875528 -114968328 + L1Md_F2 LINE L1 423 5586 -297 6 637 7616 65 14 7 chr11 6875528 6876505 -114967351 + L1Md_F2 LINE L1 5587 6570 -12 6 637 1877 234 94 12 chr11 6876726 6876976 -114966880 + Lx5 LINE L1 6361 6643 -407 6 637 207 0 0 0 chr11 6876976 6876999 -114966857 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 6 637 297 0 0 0 chr11 6876999 6877032 -114966824 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 637 1877 234 94 12 chr11 6877032 6877290 -114966566 + Lx5 LINE L1 6644 6911 -139 6 637 4936 64 11 0 chr11 6877301 6877924 -114965932 - L1_Mus2 LINE L1 -1 6565 5936 6 637 9841 124 20 19 chr11 6877931 6880060 -114963796 - L1VL4 LINE L1 -1300 2259 131 6 637 676 203 22 7 chr11 6880126 6880265 -114963591 - B1_Mur1 SINE Alu -1 148 8 6 637 1946 167 14 101 chr11 6880517 6880931 -114962925 - ORR1C1 LTR MaLR 0 378 1 6 637 414 321 76 10 chr11 6881045 6881243 -114962613 + LTR73 LTR ERV1 137 347 -225 6 637 283 254 0 85 chr11 6881457 6881586 -114962270 + MER21B LTR ERV1 490 607 -256 6 637 1073 66 0 7 chr11 6881586 6881724 -114962132 - L1_Mus1 LINE L1 -343 6224 6088 6 637 3073 60 8 0 chr11 6881724 6882107 -114961749 + L1_Mus1 LINE L1 6178 6563 -4 6 637 292 279 29 79 chr11 6882649 6882789 -114961067 - LTR45 LTR ERV1 0 525 393 6 637 459 0 0 0 chr11 6883398 6883449 -114960407 + (TTA)n Simple_repeat Simple_repeat 2 52 0 6 637 5125 66 10 24 chr11 6883450 6884131 -114959725 - L1_Mus4 LINE L1 -16 6620 5949 6 637 22 0 0 0 chr11 6885116 6885138 -114958718 + AT_rich Low_complexity Low_complexity 1 22 0 6 637 831 266 0 54 chr11 6885264 6885467 -114958389 + B3A SINE B2 1 192 -6 6 637 1250 248 76 70 chr11 6885480 6885561 -114958295 + Lx9 LINE L1 6957 7047 -597 6 637 255 103 0 0 chr11 6885561 6885600 -114958256 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 637 1250 248 76 70 chr11 6885600 6885907 -114957949 + Lx9 LINE L1 7048 7339 -305 6 637 1062 45 0 0 chr11 6885907 6886039 -114957817 + (GGGAGA)n Simple_repeat Simple_repeat 5 136 0 6 637 1250 248 76 70 chr11 6886039 6886122 -114957734 + Lx9 LINE L1 7340 7431 -213 6 637 316 269 36 27 chr11 6886145 6886256 -114957600 + MLT1A LTR MaLR 263 374 0 6 637 228 268 71 71 chr11 6886700 6886869 -114956987 - Lx8 LINE L1 -1 7472 7304 6 637 1776 255 178 32 chr11 6886881 6887165 -114956691 - Lx8 LINE L1 -326 7147 6818 6 637 300 27 0 0 chr11 6887165 6887202 -114956654 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 637 1776 255 178 32 chr11 6887202 6887340 -114956516 - Lx8 LINE L1 -656 6817 6645 6 637 3152 147 33 21 chr11 6887340 6887588 -114956268 + RLTR12B LTR ERVK 1 244 -284 6 637 844 98 15 0 chr11 6887588 6887721 -114956135 + (GA)n Simple_repeat Simple_repeat 1 135 0 6 637 3152 147 33 21 chr11 6887721 6887994 -114955862 + RLTR12B LTR ERVK 245 528 0 6 637 1776 255 178 32 chr11 6887994 6888262 -114955594 - Lx8 LINE L1 -829 6644 6355 6 637 2692 44 99 3 chr11 6888402 6888765 -114955091 + MTB LTR MaLR 1 398 -2 6 637 843 10 0 0 chr11 6889788 6889884 -114953972 + (TTC)n Simple_repeat Simple_repeat 2 97 0 6 637 875 205 0 89 chr11 6892255 6892469 -114951387 + B3 SINE B2 16 210 -6 6 637 420 67 0 0 chr11 6892693 6892753 -114951103 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 637 1025 139 0 16 chr11 6892851 6893034 -114950822 + CT-rich Low_complexity Low_complexity 1 180 0 6 637 209 279 0 0 chr11 6894121 6894182 -114949674 + (CTAA)n Simple_repeat Simple_repeat 3 63 0 6 637 209 281 35 0 chr11 6894200 6894257 -114949599 + (CACG)n Simple_repeat Simple_repeat 3 61 0 6 637 862 229 123 4 chr11 6895645 6895994 -114947862 - L1MC1 LINE L1 -198 6146 5738 6 637 718 279 89 0 chr11 6896165 6896423 -114947433 - L1MC1 LINE L1 -606 5727 5447 6 637 263 309 164 85 chr11 6898406 6898583 -114945273 + Tigger5 DNA MER2_type 49 239 -2167 6 637 1648 220 70 5 chr11 6898937 6899325 -114944531 + MTD LTR MaLR 1 413 -6 6 637 918 67 0 0 chr11 6899804 6899939 -114943917 + (CA)n Simple_repeat Simple_repeat 2 136 0 6 637 540 95 0 0 chr11 6899939 6900023 -114943833 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 637 312 247 75 0 chr11 6900127 6900220 -114943636 + MER31B LTR ERV1 12 111 -355 6 637 1945 192 22 12 chr11 6900226 6900626 -114943230 + MTD LTR MaLR 14 417 -2 6 637 1007 213 121 77 chr11 6900627 6900967 -114942889 - ORR1E LTR MaLR -4 355 1 6 637 376 311 71 10 chr11 6900967 6901165 -114942691 + MER31B LTR ERV1 109 318 -148 6 637 657 180 66 0 chr11 6902059 6902181 -114941675 - B3 SINE B2 -86 130 1 6 637 724 248 80 46 chr11 6902181 6902308 -114941548 - B4A SINE B4 -60 232 104 6 637 1875 206 57 18 chr11 6902308 6902709 -114941147 + MTC LTR MaLR 5 421 0 6 637 724 248 80 46 chr11 6902709 6902805 -114941051 - B4A SINE B4 -189 103 1 6 637 854 262 10 5 chr11 6902882 6903089 -114940767 + B3 SINE B2 2 209 -7 6 637 213 39 0 0 chr11 6903266 6903292 -114940564 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 6 637 1915 157 70 3 chr11 6903311 6903656 -114940200 + ORR1B1 LTR MaLR 1 368 -26 6 637 318 337 110 20 chr11 6903684 6903938 -114939918 + L1MDa LINE L1 1432 1708 -4925 6 637 21 71 0 0 chr11 6904045 6904087 -114939769 + AT_rich Low_complexity Low_complexity 1 42 0 6 637 981 186 61 37 chr11 6904287 6904338 -114939518 - Lx7 LINE L1 -289 7407 7352 6 637 270 0 0 0 chr11 6904338 6904368 -114939488 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 637 981 186 61 37 chr11 6904368 6904561 -114939295 - Lx7 LINE L1 -345 7351 7157 6 637 449 220 36 57 chr11 6905024 6905164 -114938692 + RNERVK23-int LTR ERVK 6195 6331 -1886 6 637 930 275 72 114 chr11 6905866 6906522 -114937334 + RLTR6-int LTR ERV1 6731 7666 -112 6 637 1266 296 0 0 chr11 6906184 6906528 -114937328 + RNERVK23-int LTR ERVK 7411 7754 -463 6 637 4378 166 23 4 chr11 6906632 6907327 -114936529 + ETnERV2-int LTR ERVK 6495 7202 -204 6 637 807 186 119 0 chr11 6907713 6907906 -114935950 - Lx7 LINE L1 -594 7102 6887 6 637 282 272 65 69 chr11 6907916 6908133 -114935723 + L1MEf LINE L1 1468 1683 -4559 6 637 471 18 0 0 chr11 6908249 6908305 -114935551 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 637 216 86 0 0 chr11 6908394 6908429 -114935427 + (T)n Simple_repeat Simple_repeat 1 35 0 6 637 279 202 7 191 chr11 6908452 6908463 -114935393 - PB1D9 SINE Alu 0 120 79 6 637 510 214 9 18 chr11 6908463 6908577 -114935279 - B4 SINE B4 -74 218 106 6 637 279 202 7 191 chr11 6908577 6908593 -114935263 - PB1D9 SINE Alu 0 78 6 6 637 1159 90 0 17 chr11 6908603 6908784 -114935072 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 637 941 104 0 7 chr11 6908784 6908929 -114934927 + (TTTC)n Simple_repeat Simple_repeat 3 146 0 6 637 278 190 52 0 chr11 6908930 6908988 -114934868 - B4 SINE B4 -231 61 1 6 637 275 295 32 0 chr11 6909040 6909135 -114934721 + L1MEf LINE L1 1872 1969 -4273 6 637 201 39 0 0 chr11 6909199 6909225 -114934631 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 637 319 296 17 0 chr11 6909474 6909589 -114934267 - L1MA4 LINE L1 -367 5933 5817 6 637 235 278 0 27 chr11 6909849 6909923 -114933933 + GA-rich Low_complexity Low_complexity 1 72 0 6 637 479 69 14 0 chr11 6909923 6909995 -114933861 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 6 637 1792 188 66 8 chr11 6910020 6910400 -114933456 - MT2A LTR ERVL -127 406 5 6 637 216 184 0 0 chr11 6910525 6910563 -114933293 - PB1D10 SINE Alu -14 103 66 6 637 624 289 54 18 chr11 6910618 6910896 -114932960 - L1MA4 LINE L1 -778 5365 5078 6 637 1005 308 93 42 chr11 6910900 6911714 -114932142 + L1MEf LINE L1 2162 3038 -3108 6 637 847 203 83 5 chr11 6911714 6911907 -114931949 + B3 SINE B2 2 209 -7 6 637 1005 308 93 42 chr11 6911907 6911983 -114931873 + L1MEf LINE L1 3039 3098 -3048 6 637 537 58 0 0 chr11 6912493 6912562 -114931294 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 6 637 12620 78 10 7 chr11 6912597 6915002 -114928854 - L1_Mus2 LINE L1 0 6566 4153 6 637 313 304 119 42 chr11 6915494 6915662 -114928194 - MLT1A LTR MaLR -94 280 100 7 637 426 303 73 5 chr11 6919534 6919753 -114924103 - L1MD2 LINE L1 -415 5944 5711 7 637 652 238 131 31 chr11 6920099 6920359 -114923497 - L1MD2 LINE L1 -807 5339 5054 7 637 220 278 19 0 chr11 6920388 6920442 -114923414 - ID4_ SINE ID -6 77 23 7 637 458 263 165 21 chr11 6920606 6920897 -114922959 - L1MD2 LINE L1 -1310 4836 4504 7 637 515 310 20 29 chr11 6920920 6921166 -114922690 - L1ME2z LINE L1 -121 6323 6080 7 637 19917 83 14 35 chr11 6921317 6922529 -114921327 - L1_Mus2 LINE L1 0 6566 5370 7 637 938 57 0 0 chr11 6922529 6922651 -114921205 + B1_Mm SINE Alu 1 122 -25 7 637 243 0 0 0 chr11 6922651 6922678 -114921178 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 637 19917 106 21 53 chr11 6922678 6922797 -114921059 - L1_Mus2 LINE L1 -514 5369 5248 7 637 771 11 0 0 chr11 6922797 6922885 -114920971 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 7 637 19917 106 21 53 chr11 6922885 6924638 -114919218 - L1_Mus2 LINE L1 -636 5247 3490 7 637 450 0 0 0 chr11 6924638 6924688 -114919168 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 7 637 19917 106 21 53 chr11 6924688 6925438 -114918418 - L1_Mus2 LINE L1 -2394 3489 2732 7 637 26 64 0 0 chr11 6925507 6925554 -114918302 + AT_rich Low_complexity Low_complexity 1 47 0 7 637 225 267 320 0 chr11 6925586 6925758 -114918098 - Lx9 LINE L1 -31 7613 7387 7 637 443 244 141 0 chr11 6925920 6926076 -114917780 + RCHARR1 DNA MER1_type 715 892 -82 7 637 372 22 0 0 chr11 6926081 6926126 -114917730 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 637 785 286 166 19 chr11 6926160 6926835 -114917021 - L1MD2 LINE L1 -2218 3928 3155 7 637 362 248 0 0 chr11 6926835 6926948 -114916908 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 7 637 518 242 121 0 chr11 6927017 6927149 -114916707 - RSINE1 SINE B4 -13 152 5 7 637 282 238 117 39 chr11 6927149 6927463 -114916393 - L1MD2 LINE L1 -2970 3176 2831 7 637 189 107 0 0 chr11 6927907 6927935 -114915921 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 7 637 848 280 47 72 chr11 6929455 6929889 -114913967 + MLT1C LTR MaLR 1 389 -1 7 637 570 254 77 61 chr11 6930229 6930526 -114913330 + L1M4 LINE L1 2654 2955 -3191 7 637 180 135 0 0 chr11 6930535 6930572 -114913284 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 7 637 712 48 29 0 chr11 6930623 6930727 -114913129 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 7 637 292 276 9 28 chr11 6930731 6930839 -114913017 - MLT2C1 LTR ERVL -287 110 5 7 637 291 113 111 16 chr11 6930843 6930906 -114912950 + L1M4 LINE L1 3058 3126 -3020 7 637 357 82 0 0 chr11 6930906 6930955 -114912901 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 7 637 225 293 89 15 chr11 6930955 6931090 -114912766 + L1M4 LINE L1 3116 3260 -2886 7 637 445 277 36 0 chr11 6931130 6931267 -114912589 + B1F2 SINE Alu 8 149 0 7 637 824 309 32 14 chr11 6931366 6931624 -114912232 + B4 SINE B4 9 271 -21 7 637 606 99 0 0 chr11 6931624 6931715 -114912141 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 637 824 309 32 14 chr11 6931715 6931735 -114912121 + B4 SINE B4 272 291 -1 7 637 970 291 88 35 chr11 6931735 6932248 -114911608 + L1M4 LINE L1 3327 3866 -2280 7 637 958 288 76 44 chr11 6932421 6932963 -114910893 + L1M4 LINE L1 4644 5202 -944 7 637 306 302 0 9 chr11 6932964 6933057 -114910799 + B3 SINE B2 1 88 -107 7 637 766 52 71 0 chr11 6933662 6933816 -114910040 + (TC)n Simple_repeat Simple_repeat 2 166 0 7 637 2876 99 31 84 chr11 6933980 6934489 -114909367 + RLTR45 LTR ERVK 1 482 0 7 637 1263 57 0 17 chr11 6935270 6935450 -114908406 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 7 637 558 0 0 0 chr11 6935459 6935521 -114908335 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 7 637 1055 239 10 5 chr11 6935540 6935742 -114908114 - B3 SINE B2 -13 203 1 7 637 226 358 58 7 chr11 6935878 6936016 -114907840 + MER5A DNA MER1_type 44 188 -1 7 637 431 302 18 12 chr11 6936085 6936256 -114907600 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 7 637 208 212 33 27 chr11 6936285 6936435 -114907421 + (CATATA)n Simple_repeat Simple_repeat 6 156 0 7 637 556 300 138 11 chr11 6937437 6937697 -114906159 - MER2 DNA MER2_type -48 297 5 7 637 280 286 0 0 chr11 6938083 6938146 -114905710 + C-rich Low_complexity Low_complexity 5 67 0 7 637 3099 210 52 95 chr11 6938162 6939097 -114904759 - Lx7 LINE L1 -1 7695 6801 7 637 261 75 0 0 chr11 6939650 6939690 -114904166 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 7 637 303 284 0 22 chr11 6940522 6940612 -114903244 - PB1D10 SINE Alu -29 88 1 7 637 403 219 57 9 chr11 6940931 6941037 -114902819 - PB1D7 SINE Alu -8 112 2 7 637 332 342 32 21 chr11 6941037 6941225 -114902631 + L1MA9 LINE L1 6093 6282 -30 7 637 24 32 0 0 chr11 6941236 6941267 -114902589 + AT_rich Low_complexity Low_complexity 1 31 0 7 637 396 0 0 0 chr11 6941429 6941473 -114902383 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 637 650 274 100 15 chr11 6942309 6942579 -114901277 + RMER5 LTR ERV1 15 307 -227 7 637 468 348 62 33 chr11 6942848 6943059 -114900797 - B4A SINE B4 -75 217 1 7 637 1351 221 104 43 chr11 6943280 6943459 -114900397 - MTD LTR MaLR -14 405 203 7 637 306 0 0 0 chr11 6943459 6943493 -114900363 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 637 1507 221 104 43 chr11 6943493 6943687 -114900169 - MTD LTR MaLR -217 202 9 7 637 286 262 64 100 chr11 6944859 6944999 -114898857 + RMER15 LTR ERVL 5 139 -436 7 637 729 299 53 9 chr11 6945075 6945301 -114898555 + RMER15 LTR ERVL 336 571 -4 7 637 1630 334 42 47 chr11 6945303 6946113 -114897743 + RMER15-int LTR ERVL 2 807 -4192 7 637 1005 279 22 40 chr11 6946118 6946439 -114897417 - ORR1D2 LTR MaLR -6 364 50 7 79 2897 273 57 20 chr11 6946468 6947332 -114896524 + RMER15-int LTR ERVL 802 1697 -3302 7 638 495 0 0 0 chr11 6947719 6947774 -114896082 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 638 848 296 64 7 chr11 6947928 6948210 -114895646 + Lx8 LINE L1 6198 6495 -978 7 638 1002 243 151 46 chr11 6948210 6948581 -114895275 + RMER15-int LTR ERVL 4451 4860 -139 7 638 368 307 38 49 chr11 6948652 6948837 -114895019 + RMER15 LTR ERVL 3 185 -390 7 638 2820 25 0 6 chr11 6948845 6949169 -114894687 - RLTRETN_Mm LTR ERVK 0 322 1 7 638 2266 69 36 3 chr11 6950582 6950889 -114892967 - IAPLTR2b LTR ERVK -10 317 1 7 638 519 335 99 59 chr11 6951102 6951524 -114892332 + L1M5 LINE L1 2305 2743 -3403 7 638 308 339 144 61 chr11 6951621 6951982 -114891874 + MER34A LTR ERV1 108 498 -73 7 638 252 337 10 10 chr11 6952044 6952140 -114891716 - MLT1C LTR MaLR -191 276 181 7 638 693 278 80 10 chr11 6952447 6952647 -114891209 - B3 SINE B2 0 216 3 7 638 462 115 77 0 chr11 6953220 6953298 -114890558 - MTD LTR MaLR 0 419 336 7 638 792 244 57 19 chr11 6953294 6953503 -114890353 - MTD-int LTR MaLR -1041 217 1 7 638 1501 151 253 35 chr11 6953503 6953847 -114890009 - MTD LTR MaLR 0 419 1 7 638 1171 359 111 37 chr11 6954236 6955002 -114888854 + MER21B LTR ERV1 15 837 -26 7 638 431 341 82 0 chr11 6957042 6957224 -114886632 + MLT2D LTR ERVL 187 383 -31 7 638 186 224 0 0 chr11 6957234 6957283 -114886573 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 638 268 157 20 0 chr11 6957283 6957334 -114886522 + Ricksha_c DNA MuDR 854 905 -1143 7 638 279 242 92 92 chr11 6958732 6958873 -114884983 + RMER15 LTR ERVL 422 562 -13 7 638 279 79 0 0 chr11 6959154 6959192 -114884664 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 7 638 462 312 87 93 chr11 6959609 6959976 -114883880 - MLT1A0 LTR MaLR 0 365 1 7 638 191 267 145 13 chr11 6960461 6960537 -114883319 - MIRb SINE MIR -103 165 80 7 638 263 314 22 44 chr11 6961251 6961341 -114882515 - MLT1C LTR MaLR -249 218 131 7 638 294 29 0 0 chr11 6961722 6961757 -114882099 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 7 638 237 191 45 60 chr11 6963207 6963274 -114880582 - MIRc SINE MIR -119 149 84 7 638 106 69 0 0 chr11 6963384 6963588 -114880268 + GC_rich Low_complexity Low_complexity 1 204 0 7 638 238 202 0 77 chr11 6963604 6963695 -114880161 + G-rich Low_complexity Low_complexity 5 88 0 7 638 197 230 81 94 chr11 6964283 6964432 -114879424 - MIRc SINE MIR -81 187 41 7 638 194 0 0 37 chr11 6964474 6964501 -114879355 + (TGG)n Simple_repeat Simple_repeat 1 26 0 7 638 187 233 23 0 chr11 6967122 6967165 -114876691 + MIR SINE MIR 110 153 -109 7 638 320 259 83 55 chr11 6972675 6972892 -114870964 - L1MC3 LINE L1 -805 6980 6758 7 638 378 255 94 0 chr11 6972892 6972998 -114870858 - PB1D10 SINE Alu 0 117 2 7 638 272 311 10 0 chr11 6973096 6973199 -114870657 - L1MC3 LINE L1 -1167 6618 6515 7 638 1364 94 0 10 chr11 6974644 6974838 -114869018 + B2_Mm2 SINE B2 1 192 -3 7 638 3478 23 10 0 chr11 6975571 6975963 -114867893 + MTA_Mm LTR MaLR 1 396 0 7 638 1050 268 14 21 chr11 6976073 6976363 -114867493 + Lx5 LINE L1 6745 7032 -18 7 638 378 61 0 0 chr11 6976363 6976412 -114867444 + (GGA)n Simple_repeat Simple_repeat 2 50 0 7 638 914 317 61 11 chr11 6976975 6977354 -114866502 - MER57F LTR ERV1 -34 402 5 7 638 388 257 30 162 chr11 6978294 6978461 -114865395 - MLT1B LTR MaLR 0 390 246 7 638 447 274 0 104 chr11 6978478 6978641 -114865215 - MLT1B LTR MaLR -237 153 8 7 638 206 360 6 34 chr11 6979974 6980152 -114863704 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 7 638 420 229 51 68 chr11 6980258 6980375 -114863481 - PB1D10 SINE Alu 0 117 3 7 638 261 283 107 56 chr11 6980906 6981180 -114862676 - L1MA6 LINE L1 -205 6095 5791 7 638 1209 68 0 0 chr11 6981373 6981519 -114862337 - B1_Mm SINE Alu 0 147 2 7 638 3463 121 113 0 chr11 6981636 6982165 -114861691 - Lx4A LINE L1 0 7058 6470 7 638 889 280 88 48 chr11 6983673 6984149 -114859707 - RMER5 LTR ERV1 -19 515 21 7 638 297 0 0 0 chr11 6984218 6984251 -114859605 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 638 369 0 0 0 chr11 6984251 6984291 -114859565 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 638 297 0 0 0 chr11 6984344 6984377 -114859479 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 638 271 269 30 0 chr11 6985173 6985240 -114858616 - ID4 SINE ID -14 69 1 7 638 678 82 0 0 chr11 6985776 6985874 -114857982 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 7 638 775 228 179 5 chr11 6986057 6986269 -114857587 + RLTR28B LTR ERVL 17 265 -216 7 638 466 305 93 51 chr11 6987113 6987327 -114856529 - MLT1B LTR MaLR -77 313 91 7 638 858 276 52 0 chr11 6987535 6987807 -114856049 - Lx9 LINE L1 -162 7482 7197 7 638 231 222 18 18 chr11 6987869 6987924 -114855932 - MLT1B LTR MaLR -408 59 5 7 638 757 300 5 14 chr11 6989513 6989726 -114854130 - ID_B1 SINE B4 0 224 14 7 638 593 300 26 46 chr11 6990017 6990321 -114853535 - L1MB8 LINE L1 -109 6069 5772 7 638 717 77 219 17 chr11 6990383 6990502 -114853354 + B1_Mus1 SINE Alu 1 143 -5 7 638 426 298 29 0 chr11 6990503 6990607 -114853249 - PB1D10 SINE Alu -10 107 1 8 638 495 292 60 45 chr11 6990608 6990873 -114852983 - L1MB8 LINE L1 -408 5776 5508 7 638 752 215 31 12 chr11 6990883 6991043 -114852813 - B3 SINE B2 0 216 54 8 638 231 61 0 0 chr11 6991054 6991087 -114852769 + (T)n Simple_repeat Simple_repeat 1 33 0 8 638 203 157 20 0 chr11 6991119 6991170 -114852686 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 8 638 331 294 89 89 chr11 6991176 6991400 -114852456 - L1MD1 LINE L1 -14 6619 6396 8 638 961 261 50 19 chr11 6991465 6991785 -114852071 - L1MD1 LINE L1 -358 6275 5946 8 638 1562 295 110 60 chr11 6991847 6993324 -114850532 - L1MD1 LINE L1 -879 5658 4108 8 638 255 250 91 30 chr11 6993371 6993437 -114850419 - B4A SINE B4 -6 286 217 8 638 3873 281 72 18 chr11 6993465 6995890 -114847966 - Lx8 LINE L1 -60 7413 4832 8 638 671 284 38 34 chr11 6995897 6996134 -114847722 - B4A SINE B4 -54 238 1 8 638 512 312 145 31 chr11 6996147 6996849 -114847007 - L1MD1 LINE L1 -5430 1203 22 8 638 937 264 46 32 chr11 6996878 6997160 -114846696 + B4A SINE B4 1 286 -6 8 638 21 36 0 0 chr11 7001284 7001312 -114842544 + AT_rich Low_complexity Low_complexity 1 28 0 1 638 2296 149 81 13 chr11 7002286 7002680 -114841176 - MTC LTR MaLR 0 421 1 2 638 409 327 132 48 chr11 7003130 7003818 -114840038 + L1M2 LINE L1 1456 2592 -4257 3 638 569 156 18 0 chr11 7003909 7004018 -114839838 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 4 638 411 240 18 46 chr11 7004082 7004191 -114839665 + RSINE1 SINE B4 4 109 -56 5 638 310 340 37 6 chr11 7004630 7004793 -114839063 + L1M2 LINE L1 2917 3084 -3758 3 638 402 74 0 0 chr11 7004939 7004993 -114838863 + (GGA)n Simple_repeat Simple_repeat 2 55 0 6 638 339 216 226 13 chr11 7005025 7005180 -114838676 + L1M2 LINE L1 3319 3506 -3336 3 638 768 304 96 0 chr11 7005178 7005523 -114838333 + L1M2 LINE L1 5410 5787 -1055 3 638 273 293 41 48 chr11 7005861 7006008 -114837848 + L1M4 LINE L1 847 992 -5912 7 638 1293 84 0 0 chr11 7006032 7006448 -114837408 + (CAGT)n Simple_repeat Simple_repeat 1 416 0 8 638 1123 305 87 38 chr11 7006488 7007307 -114836549 + L1M4 LINE L1 1366 2228 -5106 7 638 478 236 49 14 chr11 7007651 7007793 -114836063 + Lx7 LINE L1 7011 7157 -539 9 638 24 32 0 0 chr11 7008001 7008032 -114835824 + AT_rich Low_complexity Low_complexity 1 31 0 1 638 380 37 0 18 chr11 7009458 7009513 -114834343 + (CTG)n Simple_repeat Simple_repeat 1 54 0 1 638 2488 148 33 3 chr11 7010329 7010721 -114833135 - MTC LTR MaLR -8 413 10 1 638 396 0 0 0 chr11 7010962 7011006 -114832850 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 638 405 0 0 0 chr11 7011006 7011050 -114832806 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 638 305 316 10 20 chr11 7011710 7011810 -114832046 - L1MC LINE L1 -1024 5122 5024 1 638 515 322 123 30 chr11 7014367 7014837 -114829019 - L1MD LINE L1 -363 5816 5303 1 638 295 317 46 8 chr11 7015727 7015842 -114828014 - PB1D9 SINE Alu 0 120 5 1 638 362 173 0 13 chr11 7016318 7016394 -114827462 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 638 186 43 0 0 chr11 7017119 7017142 -114826714 + (A)n Simple_repeat Simple_repeat 1 23 0 1 638 424 315 90 76 chr11 7017380 7018755 -114825101 - L1MD LINE L1 -1139 5007 3594 1 638 261 141 22 45 chr11 7018970 7019059 -114824797 + CT-rich Low_complexity Low_complexity 2 88 0 2 638 348 280 119 19 chr11 7019068 7019337 -114824519 - L1MD LINE L1 -2909 3237 2942 1 638 363 60 0 0 chr11 7019340 7019390 -114824466 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 638 522 194 0 72 chr11 7019390 7019501 -114824355 - PB1D9 SINE Alu -16 104 2 2 638 384 347 53 105 chr11 7019502 7020082 -114823774 - L1MEc LINE L1 -3188 3131 2582 2 638 2177 35 4 0 chr11 7020092 7020350 -114823506 - L1_Mus1 LINE L1 0 6567 6309 2 638 1390 66 0 0 chr11 7020352 7020534 -114823322 + L1_Mus1 LINE L1 6121 6302 -264 2 638 279 177 0 0 chr11 7020726 7020788 -114823068 + CT-rich Low_complexity Low_complexity 3 64 0 2 638 328 294 9 27 chr11 7020922 7021034 -114822822 - L1MEc LINE L1 -4213 2187 2078 2 638 444 82 0 0 chr11 7021088 7021149 -114822707 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 638 276 337 120 4 chr11 7021158 7021408 -114822448 - L1MEc LINE L1 -4419 1981 1703 2 638 238 263 77 60 chr11 7021568 7021750 -114822106 - L1MEc LINE L1 -4921 1479 1295 2 638 255 266 11 112 chr11 7023002 7023021 -114820835 + ORR1D2 LTR MaLR 16 29 -341 2 638 1216 151 92 5 chr11 7023021 7023228 -114820628 - URR1B DNA MER1_type 0 225 1 2 638 255 266 11 112 chr11 7023228 7023297 -114820559 + ORR1D2 LTR MaLR 30 95 -275 2 638 448 238 0 37 chr11 7025345 7025454 -114818402 + MLT1A1 LTR MaLR 302 406 -2 2 638 378 0 0 0 chr11 7025838 7025880 -114817976 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 638 405 0 0 0 chr11 7025880 7025924 -114817932 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 638 1069 187 5 19 chr11 7026254 7026466 -114817390 - B3 SINE B2 -5 211 4 3 638 744 12 0 0 chr11 7026799 7026884 -114816972 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 638 237 132 56 19 chr11 7027128 7027182 -114816674 + CT-rich Low_complexity Low_complexity 3 58 0 3 638 225 297 82 44 chr11 7027636 7027759 -114816097 + Charlie1b DNA MER1_type 331 461 -62 3 638 297 0 0 0 chr11 7027759 7027792 -114816064 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 638 225 297 82 44 chr11 7027792 7027851 -114816005 + Charlie1b DNA MER1_type 462 519 -4 3 638 3145 283 69 59 chr11 7027869 7029161 -114814695 - Lx8 LINE L1 0 7473 6169 3 638 432 0 0 0 chr11 7029377 7029425 -114814431 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 638 271 241 0 49 chr11 7029427 7029488 -114814368 - RSINE1 SINE B4 -44 121 64 3 638 1038 197 69 20 chr11 7031121 7031323 -114812533 + B3 SINE B2 4 215 -1 4 638 415 285 79 42 chr11 7031575 7031740 -114812116 - MER87 LTR ERV1 0 541 371 4 638 1231 57 6 17 chr11 7032096 7032274 -114811582 + (TCTA)n Simple_repeat Simple_repeat 4 179 0 4 638 807 214 6 51 chr11 7039528 7039705 -114804151 - ID_B1 SINE B4 -21 203 35 4 638 751 250 7 0 chr11 7039780 7039928 -114803928 - RSINE1 SINE B4 -14 151 3 4 638 590 302 104 61 chr11 7039955 7039973 -114803883 - B4A SINE B4 0 292 274 4 638 408 20 0 0 chr11 7039973 7040022 -114803834 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 638 590 302 104 61 chr11 7040022 7040282 -114803574 - B4A SINE B4 -19 273 2 4 638 366 23 0 0 chr11 7041203 7041246 -114802610 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 638 586 309 88 8 chr11 7041280 7041604 -114802252 + MER31A LTR ERV1 106 466 0 4 638 594 0 0 0 chr11 7042392 7042458 -114801398 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 638 1271 34 0 0 chr11 7043293 7043440 -114800416 - B1_Mm SINE Alu 0 147 1 5 638 301 290 142 80 chr11 7043737 7043913 -114799943 - L1MDa LINE L1 -6239 394 208 5 638 338 61 20 0 chr11 7044941 7044990 -114798866 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 638 676 312 65 36 chr11 7045213 7045519 -114798337 - ORR1E LTR MaLR -6 353 39 5 638 272 290 0 0 chr11 7048724 7048786 -114795070 + polypurine Low_complexity Low_complexity 3 64 0 5 638 333 0 0 0 chr11 7048904 7048941 -114794915 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 638 1301 168 5 9 chr11 7049047 7049269 -114794587 - URR1B DNA MER1_type 0 225 5 5 638 286 303 0 0 chr11 7049404 7049480 -114794376 - ID4_ SINE ID -6 77 2 5 638 810 85 0 0 chr11 7050387 7050516 -114793340 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 638 942 121 43 0 chr11 7053419 7053559 -114790297 - B1_Mus1 SINE Alu -1 147 2 5 638 480 228 127 52 chr11 7054056 7054190 -114789666 - RSINE1 SINE B4 -19 146 3 6 638 374 331 131 7 chr11 7054794 7055018 -114788838 - L1M4 LINE L1 -3191 2955 2707 6 638 300 335 93 13 chr11 7055227 7055378 -114788478 - MLT1I LTR MaLR -12 399 237 6 638 437 0 0 19 chr11 7055954 7056008 -114787848 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 638 1326 120 96 0 chr11 7056008 7056217 -114787639 - MTC LTR MaLR -187 234 6 6 638 287 221 160 19 chr11 7056853 7056959 -114786897 + Charlie7 DNA MER1_type 1927 2047 -565 6 638 977 155 0 20 chr11 7057228 7057379 -114786477 + B1_Mur2 SINE Alu 2 149 0 6 638 321 298 143 62 chr11 7057666 7057974 -114785882 + Charlie7 DNA MER1_type 2277 2609 -3 6 638 1026 117 7 14 chr11 7058777 7058925 -114784931 - B1_Mus1 SINE Alu 0 148 2 6 638 1566 281 140 106 chr11 7062260 7062798 -114781058 + L1MC1 LINE L1 3546 4137 -2196 6 638 383 353 37 8 chr11 7062798 7062932 -114780924 - B1F SINE Alu -11 138 1 6 638 1566 281 140 106 chr11 7062932 7064455 -114779401 + L1MC1 LINE L1 4138 5817 -516 6 638 704 280 75 12 chr11 7064496 7064749 -114779107 + L1MC1 LINE L1 5932 6200 -133 6 638 204 317 72 12 chr11 7067224 7067307 -114776549 - MIRc SINE MIR -120 148 61 7 638 912 167 0 7 chr11 7067517 7067662 -114776194 + B1_Mus2 SINE Alu 3 146 -1 7 638 368 275 158 37 chr11 7072212 7072573 -114771283 + MLT1E2 LTR MaLR 144 521 -106 7 639 228 67 0 0 chr11 7078046 7078076 -114765780 + (A)n Simple_repeat Simple_repeat 1 30 0 7 639 504 120 0 0 chr11 7079117 7079217 -114764639 + (GA)n Simple_repeat Simple_repeat 2 101 0 7 639 604 114 42 14 chr11 7079242 7079384 -114764472 + (TG)n Simple_repeat Simple_repeat 2 147 0 7 639 391 290 110 29 chr11 7079402 7079684 -114764172 - MLT2C2 LTR ERVL -63 351 3 7 639 5087 84 79 54 chr11 7080201 7080984 -114762872 + RLTR13B4 LTR ERVK 1 803 0 7 639 393 314 94 31 chr11 7081088 7081279 -114762577 + MLT1E2 LTR MaLR 191 393 -234 7 639 522 0 0 0 chr11 7082429 7082487 -114761369 + (CAG)n Simple_repeat Simple_repeat 1 58 0 7 639 632 221 0 76 chr11 7082737 7082869 -114760987 - RSINE1 SINE B4 -41 124 3 8 639 185 264 146 39 chr11 7084639 7084769 -114759087 - L2 LINE L2 -3249 170 27 8 639 269 218 163 0 chr11 7085250 7085328 -114758528 - B1F2 SINE Alu -29 91 2 8 639 1327 143 28 28 chr11 7086953 7087113 -114756743 + URR1B DNA MER1_type 1 154 -71 8 639 270 0 0 0 chr11 7087113 7087143 -114756713 + (TGG)n Simple_repeat Simple_repeat 1 30 0 8 639 1327 143 28 28 chr11 7087143 7087198 -114756658 + URR1B DNA MER1_type 155 214 -11 8 639 257 331 114 84 chr11 7087334 7087631 -114756225 + MER2B DNA MER2_type 9 314 -22 8 639 28 29 0 0 chr11 7088005 7088040 -114755816 + AT_rich Low_complexity Low_complexity 1 35 0 8 639 318 260 88 20 chr11 7089390 7089492 -114754364 - PB1 SINE Alu -18 109 1 8 639 273 211 0 0 chr11 7089562 7089573 -114754283 - B1F1 SINE Alu -6 143 133 8 639 297 0 0 0 chr11 7089573 7089606 -114754250 + (TTA)n Simple_repeat Simple_repeat 3 35 0 8 639 273 211 0 0 chr11 7089606 7089646 -114754210 - B1F1 SINE Alu -17 132 93 8 639 215 189 0 0 chr11 7089639 7089676 -114754180 - B1_Mus1 SINE Alu -103 45 9 9 639 285 29 0 0 chr11 7090719 7090753 -114753103 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 9 639 185 0 0 39 chr11 7091434 7091460 -114752396 + (TA)n Simple_repeat Simple_repeat 2 26 0 9 639 235 333 54 9 chr11 7091489 7091601 -114752255 - MIRc SINE MIR -106 162 46 9 639 551 269 8 24 chr11 7093550 7093699 -114750157 + ID_B1 SINE B4 71 211 -81 9 639 291 28 0 0 chr11 7093699 7093735 -114750121 + (CAAAC)n Simple_repeat Simple_repeat 4 39 0 9 639 712 232 0 72 chr11 7095047 7095214 -114748642 + B3A SINE B2 38 192 -6 9 639 329 238 0 0 chr11 7095303 7095366 -114748490 + PB1D7 SINE Alu 45 107 -13 9 639 183 42 0 0 chr11 7095366 7095390 -114748466 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 639 374 290 0 18 chr11 7095580 7095689 -114748167 - BC1_Mm scRNA scRNA -44 108 2 9 639 453 241 52 35 chr11 7102839 7102955 -114740901 - PB1D7 SINE Alu -2 118 1 1 639 348 155 35 0 chr11 7103572 7103630 -114740226 - MLT2B4 LTR ERVL -465 91 32 1 639 730 232 95 0 chr11 7103647 7103858 -114739998 - ERVL-B4-int LTR ERVL -32 5682 5452 1 639 419 275 47 40 chr11 7103862 7104010 -114739846 - B4A SINE B4 -142 150 2 1 639 473 337 80 6 chr11 7104274 7104588 -114739268 - ERVL-B4-int LTR ERVL -583 5131 4795 1 639 22 70 0 0 chr11 7106088 7106131 -114737725 + AT_rich Low_complexity Low_complexity 1 43 0 1 639 27 0 0 0 chr11 7107405 7107432 -114736424 + AT_rich Low_complexity Low_complexity 1 27 0 1 639 1359 189 214 20 chr11 7108551 7108902 -114734954 + MTD LTR MaLR 1 419 0 1 639 21 36 0 0 chr11 7113684 7113712 -114730144 + GC_rich Low_complexity Low_complexity 1 28 0 1 639 454 191 117 0 chr11 7117059 7117153 -114726703 - B3 SINE B2 -111 105 1 1 639 1320 224 20 41 chr11 7117155 7117448 -114726408 + Lx5 LINE L1 6753 7039 -11 1 639 1704 164 20 0 chr11 7117479 7117778 -114726078 + ORR1B2 LTR MaLR 63 367 0 1 639 324 0 0 0 chr11 7118459 7118495 -114725361 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 639 3627 146 91 24 chr11 7118519 7119257 -114724599 - RMER12 LTR ERVK -195 1127 341 1 639 279 0 0 0 chr11 7119404 7119435 -114724421 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 639 595 187 109 29 chr11 7119442 7119580 -114724276 - B1_Mur3 SINE Alu 0 149 1 1 639 406 291 85 62 chr11 7119953 7120213 -114723643 - L1M5 LINE L1 -2764 3382 3117 1 639 242 303 138 12 chr11 7120399 7120646 -114723210 - L1M5 LINE L1 -3093 3053 2776 1 639 338 362 63 21 chr11 7120874 7121111 -114722745 - L1M5 LINE L1 -3607 2539 2293 1 639 1022 152 104 5 chr11 7121195 7121387 -114722469 - ORR1C2 LTR MaLR 0 384 174 1 639 221 30 0 57 chr11 7121410 7121445 -114722411 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 1 639 234 0 0 0 chr11 7121495 7121521 -114722335 + (T)n Simple_repeat Simple_repeat 1 26 0 1 639 25 90 0 0 chr11 7121530 7121597 -114722259 + AT_rich Low_complexity Low_complexity 1 67 0 1 639 235 195 0 0 chr11 7121646 7121687 -114722169 - PB1D7 SINE Alu -1 119 79 1 639 2484 69 0 24 chr11 7121696 7122036 -114721820 - L1Md_F2 LINE L1 -2 6580 6249 1 639 837 326 76 34 chr11 7122717 7123269 -114720587 - Lx8 LINE L1 -2 7471 6897 1 639 754 291 24 77 chr11 7123269 7123556 -114720300 - B4A SINE B4 -20 272 1 1 639 625 287 240 5 chr11 7124532 7124939 -114718917 + Tigger1 DNA MER2_type 2 504 -1914 1 639 1900 226 77 62 chr11 7124933 7125542 -114718314 - MTC-int LTR MaLR -393 865 248 1 639 192 125 0 0 chr11 7125543 7125575 -114718281 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1 639 1628 140 44 11 chr11 7125575 7125850 -114718006 - Lx4A LINE L1 -16 7042 6759 1 639 257 330 18 18 chr11 7127298 7127412 -114716444 + PB1D10 SINE Alu 1 114 -3 1 639 292 287 11 22 chr11 7127423 7127447 -114716409 + ID SINE ID 2 67 -157 1 639 333 203 0 0 chr11 7127447 7127506 -114716350 + ID4_ SINE ID 23 81 -2 1 639 455 262 37 24 chr11 7127793 7127957 -114715899 + L1_Rod LINE L1 5532 5697 -150 1 639 2273 156 74 11 chr11 7127957 7128404 -114715452 - RMER19B LTR ERVK 0 902 428 1 639 611 303 62 12 chr11 7128405 7128649 -114715207 + Lx8 LINE L1 7218 7473 0 1 639 292 286 0 0 chr11 7128642 7128719 -114715137 - Lx8 LINE L1 -665 6808 6732 1 639 331 211 48 0 chr11 7128863 7129029 -114714827 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 639 246 306 32 8 chr11 7129029 7129154 -114714702 + (TATATG)n Simple_repeat Simple_repeat 6 133 0 1 639 446 217 0 8 chr11 7129154 7129275 -114714581 + (TA)n Simple_repeat Simple_repeat 1 120 0 1 639 324 206 25 28 chr11 7129285 7129517 -114714339 + (TATATG)n Simple_repeat Simple_repeat 1 231 0 1 639 378 0 0 0 chr11 7130510 7130552 -114713304 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 639 437 246 16 63 chr11 7130613 7130739 -114713117 - B4A SINE B4 -22 270 151 1 639 3427 257 82 35 chr11 7131010 7132061 -114711795 - Lx8 LINE L1 -89 7384 6285 1 639 1303 251 88 8 chr11 7132901 7133275 -114710581 + MTD LTR MaLR 6 409 -10 1 639 384 283 209 17 chr11 7133310 7133540 -114710316 - RMER15 LTR ERVL 0 575 302 1 639 803 145 23 19 chr11 7137289 7137537 -114706319 + CT-rich Low_complexity Low_complexity 1 248 0 1 639 4184 198 16 32 chr11 7140141 7140945 -114702911 + Lx4B LINE L1 5235 6035 -1023 1 639 1927 141 52 6 chr11 7140945 7141288 -114702568 - RLTR15 LTR ERVK 0 359 1 1 639 4184 259 53 78 chr11 7141288 7142312 -114701544 + Lx4B LINE L1 6036 7026 -32 1 639 872 208 82 114 chr11 7142351 7142756 -114701100 + MT2A LTR ERVL 19 546 -55 1 639 561 15 0 0 chr11 7142756 7142822 -114701034 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 639 862 244 55 83 chr11 7142822 7142872 -114700984 + MT2A LTR ERVL 547 601 0 1 639 839 322 26 16 chr11 7142888 7143197 -114700659 - Tigger7 DNA MER2_type -2113 378 67 1 639 180 0 0 0 chr11 7143437 7143457 -114700399 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 639 402 21 0 0 chr11 7143911 7143958 -114699898 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 639 1000 256 77 70 chr11 7143966 7144275 -114699581 - RLTR12B LTR ERVK -21 547 243 1 639 437 68 27 0 chr11 7144275 7144348 -114699508 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 1 639 1000 256 71 68 chr11 7144348 7144557 -114699299 - RLTR12B LTR ERVK -283 245 11 1 639 252 86 0 0 chr11 7144589 7144624 -114699232 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 639 219 36 0 0 chr11 7145476 7145504 -114698352 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 1 639 751 179 0 58 chr11 7145620 7145774 -114698082 + B3 SINE B2 1 145 -71 1 639 1203 171 115 0 chr11 7146507 7146759 -114697097 + MTD LTR MaLR 139 419 0 1 639 235 312 152 6 chr11 7147197 7147355 -114696501 - L2 LINE L2 -817 2602 2422 1 639 294 304 10 19 chr11 7147576 7147680 -114696176 - L1MB8 LINE L1 -75 6103 6001 1 639 21 0 0 0 chr11 7147782 7147803 -114696053 + AT_rich Low_complexity Low_complexity 1 21 0 1 639 429 95 0 0 chr11 7149269 7149332 -114694524 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 639 1883 116 20 3 chr11 7149670 7149965 -114693891 - L1_Mus4 LINE L1 -2 6634 6335 1 639 1132 259 76 13 chr11 7150457 7150837 -114693019 + MTD LTR MaLR 1 404 -15 1 639 358 272 44 3 chr11 7150837 7150987 -114692869 + L1M4c LINE L1 2352 2507 -3872 1 639 31225 121 24 18 chr11 7151000 7154066 -114689790 + L1_Mus1 LINE L1 380 3476 -2407 1 639 216 0 0 0 chr11 7154066 7154090 -114689766 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 639 31225 109 8 19 chr11 7154090 7155480 -114688376 + L1_Mus1 LINE L1 3477 4871 -1012 1 639 624 27 0 0 chr11 7155480 7155554 -114688302 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 1 639 31225 82 5 8 chr11 7155554 7157288 -114686568 + L1_Mus1 LINE L1 4872 6567 0 1 639 619 278 225 33 chr11 7157358 7158363 -114685493 + L1M4c LINE L1 2535 3775 -2601 1 639 9108 71 2 0 chr11 7158395 7159554 -114684302 - L1Md_F2 LINE L1 -275 5608 4448 1 639 7431 67 3 15 chr11 7159555 7160516 -114683340 + L1Md_F2 LINE L1 5621 6570 -12 1 639 428 246 305 8 chr11 7160521 7160783 -114683073 + L1M4c LINE L1 3803 4142 -2234 1 639 1460 107 0 48 chr11 7162306 7162524 -114681332 - L1Md_F2 LINE L1 -201 6381 6174 1 639 998 86 66 0 chr11 7162524 7162675 -114681181 + L1_Mus1 LINE L1 6395 6555 -12 1 639 189 0 0 0 chr11 7162684 7162705 -114681151 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 639 299 326 21 0 chr11 7162745 7162840 -114681016 + MLT1A LTR MaLR 206 302 -72 1 639 414 57 0 0 chr11 7164907 7164960 -114678896 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 639 1536 194 46 27 chr11 7164980 7165346 -114678510 - ORR1D1 LTR MaLR -1 373 1 1 639 1909 140 33 27 chr11 7165525 7165830 -114678026 + Lx3B LINE L1 6635 6945 -28 1 639 4158 124 21 43 chr11 7165830 7166598 -114677258 + RMER17A LTR ERVK 1 751 0 1 639 1909 140 33 27 chr11 7166598 7166629 -114677227 + Lx3B LINE L1 6946 6973 0 1 639 499 309 176 0 chr11 7167711 7167973 -114675883 - Lx8 LINE L1 -325 7148 6841 1 639 301 271 0 0 chr11 7167972 7168042 -114675814 - Lx8 LINE L1 -762 6711 6642 1 639 2316 291 187 19 chr11 7168061 7169462 -114674394 - L1M2 LINE L1 -1418 4725 3036 1 639 294 29 0 0 chr11 7169462 7169497 -114674359 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 639 2316 301 181 30 chr11 7169497 7170360 -114673496 - L1M2 LINE L1 -3108 3035 2114 1 639 771 186 14 7 chr11 7170758 7170899 -114672957 + B3 SINE B2 2 143 -73 1 639 2023 171 91 71 chr11 7170899 7171417 -114672439 + RLTR12B LTR ERVK 1 528 0 1 639 204 211 12 50 chr11 7171587 7171667 -114672189 + A-rich Low_complexity Low_complexity 3 79 0 1 639 204 255 20 0 chr11 7172362 7172413 -114671443 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 639 674 183 7 36 chr11 7172888 7173166 -114670690 + CT-rich Low_complexity Low_complexity 1 269 0 1 639 230 121 0 0 chr11 7173168 7173201 -114670655 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 1 639 818 211 121 11 chr11 7173292 7173474 -114670382 - B3 SINE B2 -14 202 1 1 639 192 200 0 0 chr11 7174249 7174294 -114669562 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 1 639 1152 185 34 4 chr11 7174415 7174649 -114669207 - Lx2 LINE L1 0 7008 6768 1 639 3574 149 35 13 chr11 7174650 7175556 -114668300 - Lx2 LINE L1 -802 6195 5268 1 639 403 229 12 0 chr11 7175561 7175644 -114668212 + PB1D10 SINE Alu 23 106 -11 1 639 796 242 31 5 chr11 7175828 7176019 -114667837 + B3 SINE B2 8 203 -13 1 639 816 128 0 32 chr11 7176021 7176207 -114667649 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 639 237 250 38 94 chr11 7176543 7176649 -114667207 - MLT1F1 LTR MaLR -466 103 4 1 639 671 295 106 64 chr11 7176920 7177437 -114666419 - L1MC4a LINE L1 -901 6981 6443 1 639 1329 325 119 24 chr11 7177622 7178378 -114665478 - Lx8 LINE L1 -133 7340 6513 1 639 1641 155 231 6 chr11 7178382 7178720 -114665136 - Lx5 LINE L1 0 7050 6637 1 639 916 281 17 4 chr11 7178741 7178973 -114664883 - Lx8 LINE L1 -949 6524 6290 1 639 505 222 99 38 chr11 7179636 7179767 -114664089 - B1_Mur2 SINE Alu -10 139 1 1 639 253 253 158 37 chr11 7179813 7179977 -114663879 - L1M4 LINE L1 -2990 3156 2973 1 639 1578 195 98 12 chr11 7182517 7182855 -114661001 + ORR1B2 LTR MaLR 1 367 0 1 639 239 333 24 24 chr11 7183248 7183374 -114660482 - MER5A DNA MER1_type -59 130 5 1 639 994 156 115 43 chr11 7183722 7183930 -114659926 + URR1A DNA MER1_type 3 225 -1 1 639 357 280 36 27 chr11 7184288 7184398 -114659458 - B1F SINE Alu -1 148 38 1 639 195 272 35 69 chr11 7185554 7185641 -114658215 - MIRc SINE MIR -139 129 46 2 639 489 156 10 0 chr11 7185712 7185808 -114658048 + L1_Mur2 LINE L1 4979 5075 -802 2 639 3651 186 146 6 chr11 7185803 7186614 -114657242 + Lx4B LINE L1 6135 7058 0 2 639 1146 90 6 11 chr11 7186636 7186816 -114657040 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 639 359 236 64 11 chr11 7187095 7187189 -114656667 - MLT1C LTR MaLR -361 106 8 2 639 194 0 39 0 chr11 7187471 7187497 -114656359 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 639 22 70 0 0 chr11 7187568 7187611 -114656245 + AT_rich Low_complexity Low_complexity 1 43 0 2 639 423 0 0 0 chr11 7187855 7187902 -114655954 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 639 324 0 0 0 chr11 7187902 7187938 -114655918 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 639 1560 148 19 0 chr11 7188278 7188542 -114655314 + Lx3B LINE L1 6701 6969 -4 2 639 22 0 0 0 chr11 7188552 7188574 -114655282 + AT_rich Low_complexity Low_complexity 1 22 0 2 639 378 296 62 46 chr11 7188574 7188833 -114655023 - L1MA6 LINE L1 -394 5906 5644 2 639 548 281 116 32 chr11 7189101 7189351 -114654505 + B4A SINE B4 1 271 -21 2 639 351 0 0 0 chr11 7189413 7189452 -114654404 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2 639 24 0 0 0 chr11 7189545 7189569 -114654287 + AT_rich Low_complexity Low_complexity 1 24 0 2 639 576 296 169 44 chr11 7190691 7190963 -114652893 + MER2 DNA MER2_type 9 314 -31 2 639 501 71 0 0 chr11 7190977 7191047 -114652809 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 639 291 224 0 0 chr11 7191985 7192043 -114651813 + RMER15 LTR ERVL 2 59 -516 2 639 1433 257 80 73 chr11 7192060 7192610 -114651246 + RMER15 LTR ERVL 22 575 0 2 639 306 0 0 0 chr11 7193238 7193272 -114650584 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 639 186 43 0 0 chr11 7194851 7194874 -114648982 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 2 639 290 368 0 8 chr11 7194876 7195002 -114648854 - Lx8 LINE L1 -141 7332 7208 2 639 1824 118 21 60 chr11 7195011 7195343 -114648513 + ORR1A2 LTR MaLR 1 319 -8 2 639 2621 286 49 17 chr11 7195347 7196186 -114647670 - Lx8 LINE L1 -280 7193 6328 2 639 207 0 0 0 chr11 7196420 7196443 -114647413 + (T)n Simple_repeat Simple_repeat 1 23 0 2 639 823 87 0 16 chr11 7197696 7197824 -114646032 + (TCC)n Simple_repeat Simple_repeat 3 128 0 2 639 1158 230 29 11 chr11 7198049 7198322 -114645534 - MTD LTR MaLR -138 281 4 2 639 835 182 113 6 chr11 7198463 7198640 -114645216 + MTC LTR MaLR 16 211 -210 2 639 1085 42 0 0 chr11 7198647 7198790 -114645066 + B1_Mus1 SINE Alu 6 148 0 2 639 225 94 0 0 chr11 7198790 7198822 -114645034 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 2 639 1246 168 0 9 chr11 7198822 7199050 -114644806 + MTC LTR MaLR 196 421 0 2 639 242 179 0 18 chr11 7199831 7199888 -114643968 + CT-rich Low_complexity Low_complexity 4 59 0 2 639 356 211 178 0 chr11 7199966 7200056 -114643800 - PB1D10 SINE Alu -8 109 4 2 639 1038 268 87 28 chr11 7201138 7201610 -114642246 + RMER5 LTR ERV1 35 534 0 2 639 564 252 95 0 chr11 7202247 7202394 -114641462 - RSINE1 SINE B4 -2 163 3 2 639 651 217 0 0 chr11 7202570 7202727 -114641129 + (TA)n Simple_repeat Simple_repeat 1 157 0 2 639 668 289 89 94 chr11 7203030 7203751 -114640105 - L1M4 LINE L1 -3226 3418 2706 2 639 4932 65 11 2 chr11 7203751 7204381 -114639475 + L1_Mus1 LINE L1 5930 6565 -2 2 639 668 289 89 94 chr11 7204381 7204464 -114639392 - L1M4 LINE L1 -3939 2705 2618 2 639 4431 110 4 27 chr11 7204806 7205693 -114638163 + L1Md_F3 LINE L1 607 1468 -4415 2 639 9311 51 2 1 chr11 7205689 7206855 -114637001 + L1Md_F3 LINE L1 2075 3241 -2642 2 639 2076 53 0 0 chr11 7206849 7207095 -114636761 + L1Md_F3 LINE L1 5341 5586 -297 2 639 8405 34 5 0 chr11 7207095 7208074 -114635782 + L1Md_F3 LINE L1 5587 6570 -14 2 639 2802 224 91 8 chr11 7208079 7208737 -114635119 - Lx7 LINE L1 -947 6749 6037 2 79 28927 127 26 10 chr11 7208767 7214806 -114629050 - L1_Mus3 LINE L1 -1 6637 503 2 640 1805 189 13 0 chr11 7214914 7215226 -114628630 - Lx5 LINE L1 -377 6673 6358 2 640 1157 128 10 0 chr11 7215210 7215405 -114628451 - L1_Mur3 LINE L1 -3144 2733 2537 2 640 2045 223 53 32 chr11 7215406 7215934 -114627922 - L1_Mur3 LINE L1 -6912 816 278 2 640 241 294 29 80 chr11 7215948 7216085 -114627771 - L1M4 LINE L1 -4687 2053 1924 2 640 264 310 57 9 chr11 7216304 7216532 -114627324 - L1M4 LINE L1 -5055 1487 1249 2 640 349 264 122 9 chr11 7216583 7216690 -114627166 - PB1 SINE Alu -8 119 1 2 640 325 312 0 0 chr11 7217775 7217855 -114626001 + B4A SINE B4 5 84 -208 2 640 286 326 49 21 chr11 7217902 7218046 -114625810 + MER21B LTR ERV1 507 654 -209 2 640 43 35 0 0 chr11 7219282 7219339 -114624517 + AT_rich Low_complexity Low_complexity 1 57 0 2 640 909 298 93 20 chr11 7219918 7220271 -114623585 + MTE2b LTR MaLR 1 379 0 2 640 1486 73 16 0 chr11 7220279 7220470 -114623386 - B2_Mm2 SINE B2 0 195 2 2 640 441 54 0 0 chr11 7221652 7221708 -114622148 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 640 26 0 0 0 chr11 7221802 7221828 -114622028 + AT_rich Low_complexity Low_complexity 1 26 0 2 640 185 132 26 0 chr11 7221929 7221967 -114621889 + CT-rich Low_complexity Low_complexity 2 40 0 2 640 10692 61 5 0 chr11 7222042 7224142 -114619714 - L1Md_F2 LINE L1 -9 6573 4464 2 640 1222 146 57 19 chr11 7224268 7224478 -114619378 - RMER19B LTR ERVK -13 889 672 2 640 2695 49 3 28 chr11 7224478 7224833 -114619023 - ORR1A1 LTR MaLR 0 346 1 2 640 3118 176 71 83 chr11 7224833 7225515 -114618341 - RMER19B LTR ERVK -226 676 3 2 640 499 339 96 0 chr11 7225952 7226129 -114617727 + MER63A DNA AcHobo 1 194 -16 2 640 324 0 0 0 chr11 7226168 7226204 -114617652 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 640 635 236 7 14 chr11 7226205 7226347 -114617509 - B3A SINE B2 -56 142 2 2 640 379 283 180 26 chr11 7226543 7226732 -114617124 + MER99 DNA hAT? 350 567 -264 2 640 374 274 124 39 chr11 7226773 7226902 -114616954 + MER99 DNA hAT? 692 831 0 2 640 192 125 0 0 chr11 7227021 7227053 -114616803 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 2 640 396 0 0 0 chr11 7227053 7227097 -114616759 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 640 684 245 0 0 chr11 7227347 7227486 -114616370 - B1_Mur2 SINE Alu -2 147 9 2 640 553 47 12 12 chr11 7228145 7228231 -114615625 + (TATG)n Simple_repeat Simple_repeat 1 86 0 2 640 422 192 0 0 chr11 7228776 7228854 -114615002 - B1_Mur3 SINE Alu -6 143 66 2 640 249 313 50 34 chr11 7228990 7229109 -114614747 - Lx8 LINE L1 -221 7252 7132 2 640 459 288 126 19 chr11 7229301 7229570 -114614286 + L1M2 LINE L1 2575 2872 -3271 2 640 2388 310 77 10 chr11 7229569 7230299 -114613557 - Lx8 LINE L1 -149 7324 6536 2 640 1718 150 40 22 chr11 7230299 7230620 -114613236 + ORR1A2 LTR MaLR 1 327 0 2 640 2388 310 77 10 chr11 7230620 7230778 -114613078 - Lx8 LINE L1 -938 6535 6377 2 640 266 225 12 0 chr11 7231169 7231249 -114612607 + CT-rich Low_complexity Low_complexity 1 81 0 2 640 2015 158 78 7 chr11 7231249 7231657 -114612199 - BGLII_B LTR ERVK -2 439 3 2 640 7658 204 61 48 chr11 7231661 7231847 -114612009 - MYSERV16_I-int LTR ERVK -3 2323 2134 2 640 1593 41 0 15 chr11 7231847 7232043 -114611813 - B2_Mm1a SINE B2 0 193 1 2 640 7658 204 61 48 chr11 7232043 7232237 -114611619 - MYSERV16_I-int LTR ERVK -193 2133 1945 2 640 3001 78 2 2 chr11 7232237 7232634 -114611222 + MTB LTR MaLR 1 397 -3 2 640 7658 220 66 54 chr11 7232634 7235045 -114608811 - MYSERV16_I-int LTR ERVK -382 1944 4 2 640 2235 216 5 49 chr11 7235045 7235608 -114608248 - MYSERV6-int LTR ERVK -6138 2821 2284 2 640 1818 311 61 38 chr11 7235608 7236068 -114607788 - MYSERV6-int LTR ERVK -6900 2059 1598 2 640 468 0 0 0 chr11 7236068 7236120 -114607736 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 2 640 1818 311 61 38 chr11 7236120 7236645 -114607211 - MYSERV6-int LTR ERVK -7362 1597 1051 2 640 652 308 0 7 chr11 7236671 7236946 -114606910 - MYSERV6-int LTR ERVK -8235 724 452 2 640 198 0 0 0 chr11 7237454 7237476 -114606380 + (T)n Simple_repeat Simple_repeat 1 22 0 2 640 188 137 0 19 chr11 7237928 7237980 -114605876 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 640 1717 173 149 16 chr11 7238596 7238787 -114605069 - BGLII_B LTR ERVK -1 440 211 2 640 465 19 0 0 chr11 7238787 7238841 -114605015 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 640 1717 173 149 16 chr11 7238841 7239037 -114604819 - BGLII_B LTR ERVK -231 210 1 2 640 333 155 0 0 chr11 7239037 7239095 -114604761 + CT-rich Low_complexity Low_complexity 3 60 0 2 640 275 295 10 31 chr11 7239110 7239208 -114604648 + CT-rich Low_complexity Low_complexity 5 100 0 2 640 2649 217 24 29 chr11 7239354 7240156 -114603700 + L1_Rod LINE L1 2550 3347 -2500 2 640 484 262 43 95 chr11 7240225 7240457 -114603399 + BGLII_B LTR ERVK 6 225 -216 2 640 311 226 141 51 chr11 7240506 7240683 -114603173 + RLTR12A LTR ERVK 376 568 0 2 640 226 213 49 118 chr11 7240966 7240997 -114602859 + Charlie10 DNA MER1_type 334 362 -2460 2 640 400 161 0 0 chr11 7240997 7241078 -114602778 - L1Md_F2 LINE L1 0 6582 6502 2 640 226 213 49 118 chr11 7241078 7241190 -114602666 + Charlie10 DNA MER1_type 363 467 -2355 2 640 5671 64 48 8 chr11 7241219 7241964 -114601892 - L1_Mus1 LINE L1 -2 6565 5791 2 640 1090 184 21 4 chr11 7241964 7242199 -114601657 + L1Md_F LINE L1 314 552 -5967 2 640 3944 121 2 0 chr11 7242196 7242840 -114601016 - L1Md_F LINE L1 -2029 3854 3210 2 640 1058 97 0 0 chr11 7242848 7242993 -114600863 + L1_Mus1 LINE L1 6156 6300 -267 2 640 6223 115 2 2 chr11 7243001 7244026 -114599830 + MusHAL1 LINE L1 1092 2116 -596 2 640 848 228 53 114 chr11 7244019 7244431 -114599425 - L1Md_F LINE L1 -6046 570 184 2 640 266 0 29 0 chr11 7244447 7244481 -114599375 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 640 612 164 0 0 chr11 7244485 7244595 -114599261 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 640 1443 64 0 0 chr11 7244595 7244783 -114599073 - L1_Mus1 LINE L1 -8 6559 6372 2 640 2962 216 44 48 chr11 7244988 7245933 -114597923 + L1_Rod LINE L1 3343 4284 -1563 2 640 1305 252 76 55 chr11 7245938 7246195 -114597661 + MERVL_2A-int LTR ERVL 969 1231 -4530 2 640 1763 224 41 29 chr11 7246195 7246608 -114597248 - MTD LTR MaLR 0 419 2 2 640 745 121 25 17 chr11 7246611 7246722 -114597134 + PB1D9 SINE Alu 1 113 -7 2 640 405 0 0 0 chr11 7246722 7246767 -114597089 + (CCAA)n Simple_repeat Simple_repeat 4 48 0 2 640 1305 252 76 55 chr11 7246773 7246998 -114596858 + MERVL_2A-int LTR ERVL 1232 1465 -4296 2 640 512 308 96 23 chr11 7247258 7247477 -114596379 - MLT1H LTR MaLR -258 291 57 2 640 381 32 31 16 chr11 7247516 7247580 -114596276 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 2 640 1163 126 136 0 chr11 7248065 7248264 -114595592 - URR1A DNA MER1_type 0 226 1 2 640 1898 345 89 36 chr11 7248307 7249219 -114594637 - MTE-int LTR MaLR -78 1502 543 2 640 276 252 78 134 chr11 7249222 7249401 -114594455 - ORR1E LTR MaLR -1 378 210 2 640 2291 188 128 2 chr11 7249477 7249977 -114593879 - RMER1B Other Other 0 1066 504 2 640 332 336 37 0 chr11 7249978 7250085 -114593771 - ORR1E LTR MaLR -248 111 1 2 640 1101 214 29 114 chr11 7250279 7250740 -114593116 + RLTR20D LTR ERVK 3 568 0 2 640 611 283 108 8 chr11 7250751 7251000 -114592856 - MTE-int LTR MaLR -1306 274 1 2 640 313 276 49 71 chr11 7251208 7251516 -114592340 + L1MEc LINE L1 2181 2481 -3919 3 640 1147 237 9 0 chr11 7251567 7251791 -114592065 + URR1A DNA MER1_type 1 226 0 3 640 1579 108 0 0 chr11 7252681 7252895 -114590961 - L1_Mus2 LINE L1 0 6566 6353 3 640 4602 37 0 0 chr11 7253276 7253818 -114590038 + L1Md_T LINE L1 6039 6580 -2 3 640 323 313 91 38 chr11 7254049 7254258 -114589598 + L1M4b LINE L1 1282 1501 -5833 3 640 225 303 54 14 chr11 7254344 7254491 -114589365 + L1M4b LINE L1 1641 1793 -5541 3 640 233 324 75 36 chr11 7254530 7254837 -114589019 + L1M4b LINE L1 1988 2306 -4702 3 640 396 304 52 7 chr11 7255101 7255237 -114588619 - B1F1 SINE Alu -7 142 1 3 640 22 70 0 0 chr11 7255254 7255297 -114588559 + AT_rich Low_complexity Low_complexity 1 43 0 3 640 351 313 0 124 chr11 7255304 7255457 -114588399 - B1F SINE Alu -4 145 12 3 640 596 254 305 12 chr11 7255481 7255847 -114588009 + L1MB7 LINE L1 5688 6164 -20 3 640 411 193 36 0 chr11 7255850 7255933 -114587923 - Tigger5 DNA MER2_type 0 2406 2321 3 640 286 306 69 23 chr11 7255987 7256074 -114587782 - MER47C DNA MER2_type 0 97 7 3 640 293 333 22 72 chr11 7256177 7256363 -114587493 - L1M4 LINE L1 -3604 3402 3237 3 640 3659 79 62 13 chr11 7256363 7256899 -114586957 - L1Md_F2 LINE L1 0 6582 6021 3 640 293 333 22 72 chr11 7256899 7257168 -114586688 - L1M4 LINE L1 -3770 3236 2971 3 640 663 130 0 0 chr11 7257266 7257389 -114586467 + (CCTG)n Simple_repeat Simple_repeat 4 126 0 3 640 448 324 7 13 chr11 7257405 7257555 -114586301 - B1F SINE Alu 0 149 1 3 640 378 356 93 41 chr11 7257868 7258255 -114585601 - L1M4 LINE L1 -4573 2435 2029 3 640 259 131 290 10 chr11 7258379 7258479 -114585377 - Lx4A LINE L1 -3 7055 6928 3 640 340 253 157 46 chr11 7258509 7258669 -114585187 - L1M4 LINE L1 -5338 1996 1828 3 640 373 302 109 94 chr11 7258697 7258953 -114584903 - B4A SINE B4 0 292 33 3 640 395 233 185 25 chr11 7259309 7259428 -114584428 + B1F1 SINE Alu 11 148 -1 3 640 506 335 140 38 chr11 7259447 7259919 -114583937 - L1M4 LINE L1 -5363 1541 1022 3 640 231 242 0 0 chr11 7259941 7260003 -114583853 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 640 553 225 77 48 chr11 7260003 7260179 -114583677 - B3A SINE B2 -13 203 27 3 640 317 306 63 32 chr11 7260209 7260398 -114583458 - L1M4 LINE L1 -5885 1019 825 3 640 311 309 105 18 chr11 7260990 7261161 -114582695 + L1M4 LINE L1 2798 2983 -3163 3 640 356 253 0 33 chr11 7261222 7261312 -114582544 + RSINE1 SINE B4 79 165 0 3 640 210 281 21 36 chr11 7261325 7261465 -114582391 + (CA)n Simple_repeat Simple_repeat 2 139 0 3 640 314 102 43 14 chr11 7261501 7261571 -114582285 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 640 332 0 0 0 chr11 7261634 7261671 -114582185 + HAL1-3A_ME LINE L1 1976 2012 -846 3 640 266 299 43 0 chr11 7262079 7262196 -114581660 + L1M4 LINE L1 3368 3489 -2657 3 640 405 0 0 0 chr11 7262199 7262244 -114581612 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 640 247 309 63 0 chr11 7262588 7262714 -114581142 + L1M4 LINE L1 3943 4076 -2070 3 640 22 35 0 0 chr11 7262772 7262801 -114581055 + AT_rich Low_complexity Low_complexity 1 29 0 3 640 186 43 0 0 chr11 7262917 7262940 -114580916 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 3 640 382 287 0 27 chr11 7263172 7263283 -114580573 + MTEa LTR MaLR 272 379 0 3 640 406 333 8 8 chr11 7263283 7263416 -114580440 + MTEa-int LTR MaLR 1 133 -1447 3 640 1231 181 14 0 chr11 7263438 7263654 -114580202 + URR1A DNA MER1_type 8 226 0 3 640 1733 299 172 50 chr11 7263654 7264651 -114579205 + MTEa-int LTR MaLR 125 1244 -336 3 640 234 143 0 0 chr11 7264895 7264944 -114578912 + (A)n Simple_repeat Simple_repeat 1 49 0 3 640 801 296 62 42 chr11 7265011 7265417 -114578439 + BGLII_B LTR ERVK 1 414 -27 3 640 316 296 111 23 chr11 7266339 7266383 -114577473 - B3 SINE B2 -5 190 145 3 640 180 111 0 0 chr11 7266383 7266410 -114577446 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 640 316 289 174 30 chr11 7266410 7266525 -114577331 - B3 SINE B2 -65 151 22 3 640 201 147 0 0 chr11 7266991 7267025 -114576831 + (CAT)n Simple_repeat Simple_repeat 3 36 0 3 640 1336 156 0 22 chr11 7268011 7268241 -114575615 - URR1A DNA MER1_type 0 226 2 3 640 182 245 40 20 chr11 7268489 7268539 -114575317 + MIRc SINE MIR 9 59 -209 3 640 249 344 51 20 chr11 7269029 7269127 -114574729 + ID_B1 SINE B4 75 175 -49 3 640 370 324 20 0 chr11 7269045 7269147 -114574709 + PB1D10 SINE Alu 13 116 -1 3 640 459 226 151 73 chr11 7269140 7269357 -114574499 - ORR1E-int LTR MaLR -314 1266 1123 3 640 246 269 19 0 chr11 7269563 7269615 -114574241 - ID4 SINE ID -29 54 2 3 640 2310 99 3 0 chr11 7269776 7270120 -114573736 + L1_Mm LINE L1 4737 5081 -802 3 640 239 270 50 10 chr11 7270196 7270297 -114573559 - L1_Rod LINE L1 -3616 2231 2127 3 640 476 292 23 15 chr11 7270307 7270439 -114573417 + RSINE1 SINE B4 2 134 -31 3 640 1138 316 114 31 chr11 7270449 7270648 -114573208 + L1M2 LINE L1 2386 2606 -3537 3 640 228 35 0 0 chr11 7270648 7270677 -114573179 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 640 1138 316 114 31 chr11 7270677 7271841 -114572015 + L1M2 LINE L1 2607 3863 -2280 3 640 22 56 0 0 chr11 7273153 7273189 -114570667 + AT_rich Low_complexity Low_complexity 1 36 0 3 640 1282 184 9 103 chr11 7273756 7274096 -114569760 - Lx7 LINE L1 -2 7694 7387 3 640 3931 234 70 105 chr11 7274164 7275650 -114568206 + Lx5 LINE L1 5617 7050 0 3 640 2357 199 51 31 chr11 7275662 7276138 -114567718 - Lx7 LINE L1 -394 7302 6822 3 640 2495 127 18 5 chr11 7276138 7276527 -114567329 + ORR1B1 LTR MaLR 1 394 0 3 640 2357 199 51 31 chr11 7276527 7276599 -114567257 - Lx7 LINE L1 -875 6821 6743 3 640 558 307 0 119 chr11 7277558 7277699 -114566157 - RMER30 DNA MER1_type -10 192 76 3 640 659 229 174 5 chr11 7277699 7277883 -114565973 - B3 SINE B2 -1 215 1 3 640 545 307 0 119 chr11 7277883 7277959 -114565897 - RMER30 DNA MER1_type -127 75 1 3 640 291 114 0 0 chr11 7280879 7280923 -114562933 + (CCA)n Simple_repeat Simple_repeat 1 44 0 3 640 486 0 0 0 chr11 7281821 7281875 -114561981 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 640 1797 303 104 19 chr11 7282717 7283448 -114560408 - Lx8 LINE L1 -129 7344 6552 3 640 419 304 104 0 chr11 7283542 7283677 -114560179 - B1_Mur3 SINE Alu 0 149 1 3 640 1070 309 8 39 chr11 7283677 7284037 -114559819 - Lx8 LINE L1 -929 6544 6196 3 640 1262 273 31 60 chr11 7284140 7284725 -114559131 - L1_Rod LINE L1 -2840 3007 2440 3 640 227 247 55 0 chr11 7284721 7284794 -114559062 - L1_Mm LINE L1 -4264 1619 1543 3 640 477 0 0 0 chr11 7286175 7286228 -114557628 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 640 639 0 0 0 chr11 7286892 7286963 -114556893 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 640 249 307 114 56 chr11 7286993 7287334 -114556522 + L1MDa LINE L1 1612 1972 -4661 3 640 675 296 15 10 chr11 7288113 7288318 -114555538 - L1MC3 LINE L1 -1200 6585 6380 3 640 750 319 168 0 chr11 7288794 7289032 -114554824 + B4A SINE B4 1 278 -14 3 640 417 0 0 0 chr11 7289281 7289328 -114554528 - ORR1A3 LTR MaLR -8 318 272 3 640 18419 82 14 5 chr11 7289340 7291957 -114551899 - L1VL4 LINE L1 -148 3669 1020 3 640 490 0 0 0 chr11 7291957 7292013 -114551843 + MTA_Mm LTR MaLR 1 56 -340 3 640 9850 34 3 0 chr11 7292013 7293104 -114550752 + MTA_Mm-int LTR MaLR 5 1098 0 3 640 3705 15 5 0 chr11 7293104 7293498 -114550358 + MTA_Mm LTR MaLR 1 396 0 3 640 1938 76 0 4 chr11 7293498 7293763 -114550093 - L1VL4 LINE L1 -5536 1024 761 3 640 1626 155 29 7 chr11 7293763 7294042 -114549814 - ORR1A3 LTR MaLR -41 285 1 3 640 397 208 83 0 chr11 7294495 7294567 -114549289 + ID4 SINE ID 4 81 -2 3 640 238 340 20 0 chr11 7294783 7294883 -114548973 - L1ME1 LINE L1 -59 6120 6019 3 640 210 154 50 25 chr11 7295623 7295635 -114548221 + (TA)n Simple_repeat Simple_repeat 1 13 0 3 640 936 77 23 12 chr11 7295635 7295806 -114548050 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 3 640 210 154 50 25 chr11 7295806 7295873 -114547983 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 640 198 143 0 0 chr11 7295889 7295924 -114547932 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 3 640 36163 73 7 8 chr11 7295924 7302038 -114541818 - L1Md_F2 LINE L1 -1 6581 481 3 640 1793 231 62 18 chr11 7302722 7303123 -114540733 - MTD LTR MaLR 0 419 1 3 640 522 252 174 29 chr11 7303209 7303464 -114540392 + MTE2a LTR MaLR 19 344 -35 3 640 234 62 0 0 chr11 7303918 7303950 -114539906 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 3 640 3365 198 115 12 chr11 7303950 7304691 -114539165 - Lx5 LINE L1 -14 7036 6220 3 640 219 320 26 0 chr11 7304983 7305061 -114538795 + AmnSINE1 SINE SINE 15 94 -481 3 640 3547 36 8 0 chr11 7305741 7306134 -114537722 - MTA_Mm LTR MaLR 0 396 1 3 640 21 0 0 0 chr11 7306734 7306755 -114537101 + AT_rich Low_complexity Low_complexity 1 21 0 3 640 2704 62 20 6 chr11 7306777 7307120 -114536736 - L1_Mus2 LINE L1 0 6566 6219 3 640 1916 60 0 0 chr11 7307121 7307356 -114536500 + L1_Mus2 LINE L1 5875 6109 -457 3 640 322 280 10 0 chr11 7307514 7307614 -114536242 - L1MA5 LINE L1 -1 6299 6199 3 640 800 270 6 23 chr11 7307840 7308054 -114535802 + B3 SINE B2 1 193 -2 3 640 291 54 0 0 chr11 7308468 7308505 -114535351 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 640 234 337 10 0 chr11 7308516 7308614 -114535242 + (TG)n Simple_repeat Simple_repeat 2 100 0 3 640 3608 105 14 2 chr11 7309712 7310218 -114533638 - Lx LINE L1 -511 6143 5632 3 640 2974 172 19 4 chr11 7310223 7310738 -114533118 + Lx LINE L1 6130 6652 -2 3 640 268 272 71 16 chr11 7311588 7311715 -114532141 + L1MA8 LINE L1 5738 5871 -420 3 640 588 284 77 62 chr11 7311744 7312097 -114531759 + L1MA8 LINE L1 5923 6280 -11 3 640 1835 270 79 24 chr11 7312149 7312734 -114531122 + Lx8 LINE L1 6158 6774 -699 3 640 1369 266 60 44 chr11 7312734 7313166 -114530690 + BGLII_B LTR ERVK 1 439 -2 3 640 1860 259 50 30 chr11 7313175 7313532 -114530324 + Lx8 LINE L1 6779 7153 -320 3 640 435 38 0 0 chr11 7313532 7313585 -114530271 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 640 2032 196 43 178 chr11 7313586 7314289 -114529567 - RMER19C LTR ERVK -3 608 1 3 640 1860 259 50 30 chr11 7314289 7314471 -114529385 + Lx8 LINE L1 7154 7328 -145 3 640 297 51 0 0 chr11 7314471 7314510 -114529346 + (TAA)n Simple_repeat Simple_repeat 1 39 0 3 640 204 262 157 46 chr11 7314934 7315042 -114528814 + L2b LINE L2 3025 3144 -231 3 640 226 73 49 0 chr11 7316493 7316534 -114527322 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 640 599 283 65 19 chr11 7316600 7316755 -114527101 - RSINE1 SINE B4 -1 164 3 3 640 238 279 0 0 chr11 7316817 7316885 -114526971 - L1MA8 LINE L1 -166 6125 6058 3 640 221 301 0 14 chr11 7317306 7317380 -114526476 + CT-rich Low_complexity Low_complexity 3 75 0 3 640 402 21 0 0 chr11 7318001 7318048 -114525808 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 3 640 349 342 35 0 chr11 7318414 7318528 -114525328 + MER5A DNA MER1_type 1 118 -71 3 640 341 0 0 43 chr11 7319075 7319121 -114524735 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 640 216 67 0 0 chr11 7320224 7320254 -114523602 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 640 834 268 124 77 chr11 7320508 7321015 -114522841 - RMER4B LTR ERVK 0 466 15 4 640 476 262 182 6 chr11 7321523 7321688 -114522168 - B3A SINE B2 -3 195 2 4 640 486 258 7 77 chr11 7321765 7321908 -114521948 - RSINE1 SINE B4 -26 139 7 4 640 547 263 119 76 chr11 7322047 7322232 -114521624 + B3A SINE B2 4 196 -2 4 640 180 0 0 0 chr11 7322465 7322485 -114521371 + (T)n Simple_repeat Simple_repeat 1 20 0 4 640 543 265 45 0 chr11 7322524 7322656 -114521200 + B1F1 SINE Alu 12 149 0 4 640 306 0 0 0 chr11 7323154 7323188 -114520668 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 640 428 378 34 30 chr11 7325423 7325660 -114518196 + MER21B LTR ERV1 510 747 -116 4 640 396 0 0 0 chr11 7325757 7325801 -114518055 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 4 640 480 330 113 19 chr11 7325801 7326233 -114517623 + L1MA5 LINE L1 5828 6300 0 4 640 200 184 0 0 chr11 7326826 7326864 -114516992 + CT-rich Low_complexity Low_complexity 1 38 0 4 640 282 87 0 0 chr11 7327268 7327314 -114516542 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 4 640 348 24 0 0 chr11 7327465 7327506 -114516350 + (TTA)n Simple_repeat Simple_repeat 3 43 0 4 640 508 295 105 45 chr11 7327518 7327784 -114516072 - B4A SINE B4 -1 291 10 4 640 237 65 0 0 chr11 7329686 7329717 -114514139 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 640 1218 158 108 0 chr11 7330046 7330249 -114513607 + URR1A DNA MER1_type 1 225 -1 4 640 2447 171 64 6 chr11 7330623 7331086 -114512770 + RMER19C LTR ERVK 102 592 -19 4 640 3203 71 18 0 chr11 7331086 7331482 -114512374 + L1_Mus1 LINE L1 6165 6567 0 4 640 249 243 0 28 chr11 7331855 7331927 -114511929 + (TATG)n Simple_repeat Simple_repeat 4 73 0 4 640 366 260 90 0 chr11 7336347 7336447 -114507409 + PB1D10 SINE Alu 2 110 -7 4 640 297 135 0 0 chr11 7336455 7336507 -114507349 + (CCAA)n Simple_repeat Simple_repeat 3 54 0 4 640 783 98 0 0 chr11 7336520 7336643 -114507213 + (TCCA)n Simple_repeat Simple_repeat 1 123 0 4 640 234 296 151 32 chr11 7337018 7337097 -114506759 - L1MCb LINE L1 -5600 445 361 4 640 2628 156 171 8 chr11 7337097 7337600 -114506256 - RMER4B LTR ERVK 0 585 1 4 640 234 296 151 32 chr11 7337600 7337799 -114506057 - L1MCb LINE L1 -5685 360 134 4 640 185 244 12 0 chr11 7337808 7337894 -114505962 + CT-rich Low_complexity Low_complexity 1 87 0 4 640 436 309 8 8 chr11 7338157 7338284 -114505572 + B3A SINE B2 57 183 -15 4 640 1711 191 60 42 chr11 7338718 7339118 -114504738 + MTC LTR MaLR 15 421 0 4 640 482 135 16 1 chr11 7339753 7339848 -114504008 + B1_Mus2 SINE Alu 51 149 0 4 9 2054 186 42 81 chr11 7339877 7340540 -114503316 + RLTR31_Mm LTR ERVK 1 561 0 4 641 192 179 0 0 chr11 7341306 7341345 -114502511 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 641 4963 31 10 2 chr11 7342968 7343550 -114500306 + LTRIS_Mus LTR ERV1 1 587 0 4 641 1065 209 25 0 chr11 7344572 7344773 -114499083 + B3 SINE B2 2 207 -9 4 641 366 80 0 0 chr11 7344781 7344831 -114499025 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 641 309 275 0 0 chr11 7344874 7344943 -114498913 - ID4_ SINE ID -11 72 4 4 641 430 252 8 16 chr11 7344996 7345117 -114498739 - L1MA9 LINE L1 0 6312 6193 4 641 1328 264 56 21 chr11 7345583 7345632 -114498224 - MTD LTR MaLR -13 406 359 4 641 1456 166 211 60 chr11 7345632 7345997 -114497859 - MTC LTR MaLR 0 421 2 4 641 1328 264 56 21 chr11 7345997 7346323 -114497533 - MTD LTR MaLR -61 358 18 4 641 341 235 9 89 chr11 7346763 7346875 -114496981 + ORR1D2 LTR MaLR 24 126 -244 4 641 241 235 19 156 chr11 7346876 7347032 -114496824 + ORR1D2 LTR MaLR 251 384 -35 4 641 683 236 62 24 chr11 7347032 7347240 -114496616 - B3 SINE B2 0 216 1 4 641 240 248 32 212 chr11 7347240 7347272 -114496584 + ORR1D2 LTR MaLR 385 405 -14 4 641 242 83 0 0 chr11 7347241 7347277 -114496579 + ORR1D1 LTR MaLR 331 366 -8 4 641 1186 286 60 23 chr11 7347369 7347755 -114496101 - MTD LTR MaLR -16 403 4 4 641 208 239 0 0 chr11 7348080 7348126 -114495730 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 641 294 280 28 57 chr11 7348249 7348355 -114495501 + RMER15 LTR ERVL 63 165 -410 4 641 1196 224 23 16 chr11 7348367 7348676 -114495180 + RMER15 LTR ERVL 264 574 -1 4 641 369 333 51 0 chr11 7348699 7348837 -114495019 - MLT1A0 LTR MaLR -220 145 1 4 641 254 269 36 113 chr11 7349590 7349758 -114494098 + Lx8 LINE L1 7318 7472 -1 4 641 294 29 0 0 chr11 7350184 7350219 -114493637 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 641 362 309 136 0 chr11 7350352 7350514 -114493342 - MER2 DNA MER2_type -1 344 161 4 641 1487 94 73 22 chr11 7350537 7350809 -114493047 + RMER4B LTR ERVK 1 286 -299 4 641 534 281 107 75 chr11 7351361 7351678 -114492178 + MLT2B4 LTR ERVL 8 345 -69 4 641 663 268 111 0 chr11 7352822 7353020 -114490836 - ID_B1 SINE B4 -3 221 2 4 641 582 51 0 0 chr11 7353739 7353817 -114490039 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 641 658 280 123 38 chr11 7355279 7355621 -114488235 + MER57E1 LTR ERV1 1 371 -1 4 641 1105 139 115 29 chr11 7355921 7356129 -114487727 - URR1A DNA MER1_type 0 226 1 4 641 276 341 116 33 chr11 7358433 7358830 -114485026 + RMER5 LTR ERV1 37 466 -68 4 641 390 21 0 0 chr11 7359857 7359904 -114483952 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 641 302 115 0 19 chr11 7359904 7359957 -114483899 + (TCCCC)n Simple_repeat Simple_repeat 3 54 0 4 641 237 382 28 17 chr11 7360210 7360391 -114483465 + ORR1E LTR MaLR 9 191 -168 4 641 3865 186 65 47 chr11 7360468 7361049 -114482807 - RMER19B LTR ERVK -6 896 264 4 641 198 0 0 0 chr11 7361049 7361071 -114482785 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 4 641 3865 186 65 47 chr11 7361071 7361369 -114482487 - RMER19B LTR ERVK -639 263 2 4 641 2080 119 22 3 chr11 7363733 7364054 -114479802 + ORR1A2 LTR MaLR 1 327 0 4 641 1308 233 77 20 chr11 7364281 7364631 -114479225 - ORR1D2 LTR MaLR 0 370 1 4 641 211 286 83 74 chr11 7366797 7366918 -114476938 - MIRb SINE MIR -108 160 39 4 641 235 218 0 0 chr11 7368727 7368782 -114475074 + CT-rich Low_complexity Low_complexity 2 56 0 4 641 237 213 0 21 chr11 7369579 7369659 -114474197 + C-rich Low_complexity Low_complexity 1 78 0 4 641 216 67 0 0 chr11 7370606 7370636 -114473220 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 641 285 200 0 48 chr11 7370688 7370772 -114473084 + L1M5 LINE L1 3324 3403 -2743 4 641 743 97 9 0 chr11 7370776 7370890 -114472966 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 4 641 207 0 0 0 chr11 7370900 7370923 -114472933 + (ATG)n Simple_repeat Simple_repeat 1 23 0 4 641 289 268 0 27 chr11 7370926 7370999 -114472857 - PB1D7 SINE Alu -21 99 29 4 641 868 140 69 37 chr11 7372615 7372820 -114471036 + B2_Mm2 SINE B2 1 184 -9 4 641 495 350 71 16 chr11 7372978 7373289 -114470567 - MER2 DNA MER2_type -2 343 16 4 641 24 0 0 0 chr11 7373296 7373320 -114470536 + AT_rich Low_complexity Low_complexity 1 24 0 4 641 376 269 43 86 chr11 7374591 7374725 -114469131 + L1MD3 LINE L1 7423 7561 -434 4 641 1407 222 24 60 chr11 7374725 7375094 -114468762 + ORR1E LTR MaLR 4 359 0 4 641 376 269 43 86 chr11 7375094 7375122 -114468734 + L1MD3 LINE L1 7562 7578 -417 4 641 294 299 0 0 chr11 7375135 7375212 -114468644 + B4 SINE B4 215 291 -1 4 641 310 292 37 30 chr11 7375342 7375476 -114468380 + L1MC4a LINE L1 7468 7602 -280 4 641 767 298 49 35 chr11 7375712 7375997 -114467859 - MLT2C1 LTR ERVL -11 386 98 4 641 227 306 34 13 chr11 7376921 7377070 -114466786 - L2 LINE L2 -1619 1800 1649 4 641 35 24 0 0 chr11 7377699 7377741 -114466115 + AT_rich Low_complexity Low_complexity 1 42 0 4 641 966 289 106 38 chr11 7377800 7377834 -114466022 - L1MA6 LINE L1 -24 6276 6232 4 641 303 28 0 0 chr11 7377834 7377870 -114465986 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 641 966 289 106 38 chr11 7377870 7378385 -114465471 - L1MA6 LINE L1 -69 6231 5691 4 641 315 0 0 0 chr11 7378468 7378503 -114465353 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 641 205 178 0 0 chr11 7378692 7378737 -114465119 + A-rich Low_complexity Low_complexity 2 46 0 4 641 239 281 16 0 chr11 7378884 7378948 -114464908 + RSINE1 SINE B4 80 144 -21 4 641 454 43 14 14 chr11 7378959 7379029 -114464827 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 641 392 130 14 0 chr11 7380190 7380259 -114463597 + (TAG)n Simple_repeat Simple_repeat 1 70 0 4 641 359 327 387 4 chr11 7380371 7380633 -114463223 + MTD LTR MaLR 18 379 0 4 641 392 357 54 34 chr11 7380838 7381226 -114462630 + L1MCb LINE L1 615 1010 -5035 4 641 19709 164 31 25 chr11 7382104 7386859 -114456997 + Lx5 LINE L1 2252 7042 -8 4 641 2622 159 51 4 chr11 7386885 7387378 -114456478 - Lx5 LINE L1 -823 6227 5712 4 641 560 150 130 0 chr11 7387362 7387462 -114456394 + Lx4B LINE L1 6433 6545 -513 4 641 7342 39 1 22 chr11 7387452 7389144 -114454712 + L1Md_T LINE L1 430 2080 -3803 4 641 19687 19 0 0 chr11 7389140 7391375 -114452481 + L1Md_T LINE L1 3351 5586 -297 4 641 9052 30 0 0 chr11 7391376 7392371 -114451485 + L1Md_T LINE L1 5588 6582 0 4 641 2541 221 48 11 chr11 7392373 7392898 -114450958 + Lx5 LINE L1 6507 7050 0 4 641 277 261 192 5 chr11 7392894 7392978 -114450878 + L1MCb LINE L1 1369 1466 -5285 4 641 495 33 0 0 chr11 7392978 7393039 -114450817 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 641 277 261 192 5 chr11 7393039 7393162 -114450694 + L1MCb LINE L1 1467 1615 -5136 4 641 346 194 125 38 chr11 7393168 7393311 -114450545 + L1MCb LINE L1 1783 1989 -4671 4 641 976 339 50 5 chr11 7393511 7394108 -114449748 + L1MCb LINE L1 2531 3163 -3401 4 641 1507 241 22 19 chr11 7394179 7394538 -114449318 + MTE2b LTR MaLR 20 379 0 4 641 428 255 286 10 chr11 7394544 7394750 -114449106 + L1MC3 LINE L1 7053 7315 -470 4 641 446 279 117 48 chr11 7394754 7395070 -114448786 + L1MC3 LINE L1 7426 7763 -22 4 641 476 295 24 60 chr11 7395340 7395506 -114448350 + L1MDa LINE L1 127 286 -6347 4 641 476 268 58 29 chr11 7396990 7397195 -114446661 + L1MA4 LINE L1 5486 5683 -617 4 641 332 280 50 0 chr11 7397189 7397289 -114446567 + L1MA4 LINE L1 5803 5907 -393 4 641 219 103 0 0 chr11 7397324 7397363 -114446493 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 641 891 284 61 20 chr11 7397595 7398055 -114445801 + L1MDa LINE L1 1562 2040 -4593 4 641 245 287 117 51 chr11 7398108 7398460 -114445396 + L1MDa LINE L1 2153 2527 -4106 4 641 498 308 124 35 chr11 7398525 7398788 -114445068 + L1MDa LINE L1 2596 2872 -3665 4 641 378 0 0 0 chr11 7398788 7398830 -114445026 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 641 498 308 124 35 chr11 7398830 7399219 -114444637 + L1MDa LINE L1 2873 3305 -3232 4 641 990 183 21 26 chr11 7399221 7399412 -114444444 + ORR1D1 LTR MaLR 1 190 -184 5 641 462 157 0 0 chr11 7399414 7399535 -114444321 + (TG)n Simple_repeat Simple_repeat 2 122 0 5 641 946 158 156 11 chr11 7399550 7399736 -114444120 + ORR1D1 LTR MaLR 172 384 0 5 641 314 323 63 0 chr11 7399748 7399875 -114443981 + L1MDa LINE L1 3311 3445 -3092 4 641 744 308 79 77 chr11 7399886 7400411 -114443445 + L1MDa LINE L1 3569 4070 -2467 4 641 411 21 0 0 chr11 7400411 7400459 -114443397 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 641 744 308 79 77 chr11 7400459 7400917 -114442939 + L1MDa LINE L1 4071 4553 -1984 4 641 684 307 78 28 chr11 7401252 7401647 -114442209 + L1_Rod LINE L1 478 892 -6280 5 641 827 259 25 13 chr11 7401616 7401851 -114442005 + L1M2 LINE L1 2556 2793 -3350 5 641 344 204 22 11 chr11 7401883 7401972 -114441884 + B3 SINE B2 122 211 -5 5 641 252 270 81 0 chr11 7402009 7402083 -114441773 + MTD LTR MaLR 210 289 -130 5 641 1081 248 124 25 chr11 7402099 7402413 -114441443 + Lx8 LINE L1 7069 7413 -60 5 641 441 328 11 28 chr11 7402417 7402593 -114441263 + Lx9 LINE L1 6878 7050 -594 5 641 28 0 0 0 chr11 7402619 7402647 -114441209 + AT_rich Low_complexity Low_complexity 1 28 0 5 641 597 118 27 8 chr11 7402907 7403036 -114440820 + ORR1B1 LTR MaLR 1 155 -239 5 641 390 176 0 2 chr11 7403036 7403105 -114440751 + ORR1B1 LTR MaLR 259 367 0 5 641 250 257 138 0 chr11 7403133 7403242 -114440614 + L1MD LINE L1 2581 2704 -3442 5 641 502 288 86 0 chr11 7403797 7403960 -114439896 + Lx8 LINE L1 7122 7298 -175 5 641 252 226 24 12 chr11 7404031 7404116 -114439740 + L1MA4A LINE L1 6216 6301 -2 5 641 380 279 134 15 chr11 7405750 7405952 -114437904 - L1MEe LINE L1 -4548 1576 1319 5 641 482 103 0 25 chr11 7405952 7406032 -114437824 - L1Md_F2 LINE L1 -12 6570 6493 5 641 365 303 81 47 chr11 7406032 7406127 -114437729 - L1MEe LINE L1 -4882 1318 1225 5 641 493 279 131 5 chr11 7407324 7407515 -114436341 + MER31A LTR ERV1 17 231 -254 5 641 3604 159 39 69 chr11 7407546 7407866 -114435990 - RMER6D LTR ERVK 0 720 380 5 641 399 41 0 0 chr11 7407866 7407915 -114435941 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 641 3604 159 39 69 chr11 7407915 7408331 -114435525 - RMER6D LTR ERVK -341 379 6 5 641 472 286 54 69 chr11 7408294 7408497 -114435359 + MER31A LTR ERV1 232 431 -54 5 641 250 351 142 69 chr11 7409740 7410058 -114433798 + LTR33B LTR ERVL 163 503 0 5 641 23 0 0 0 chr11 7410631 7410654 -114433202 + AT_rich Low_complexity Low_complexity 1 23 0 5 641 304 276 137 116 chr11 7411437 7411773 -114432083 + ORR1E LTR MaLR 1 343 -16 5 641 1060 211 49 5 chr11 7412097 7412302 -114431554 + B3 SINE B2 3 216 0 5 641 377 303 156 13 chr11 7413533 7413687 -114430169 + B3A SINE B2 1 176 -22 5 641 486 61 0 0 chr11 7413699 7413765 -114430091 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 641 53 17 0 0 chr11 7413779 7413839 -114430017 + AT_rich Low_complexity Low_complexity 1 60 0 5 641 491 279 96 27 chr11 7414215 7414403 -114429453 - Tigger7 DNA MER2_type -3 2488 2288 5 641 363 329 6 64 chr11 7414544 7414700 -114429156 + MER2B DNA MER2_type 190 336 0 5 641 360 0 0 0 chr11 7416371 7416411 -114427445 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 641 1171 120 6 0 chr11 7416878 7417045 -114426811 + RLTR20A2 LTR ERVK 1 168 -410 5 641 2129 123 10 7 chr11 7417046 7417349 -114426507 + Lx3_Mus LINE L1 6706 7009 0 5 641 197 167 0 18 chr11 7417440 7417495 -114426361 + (TCTCTG)n Simple_repeat Simple_repeat 3 56 0 5 641 1812 170 31 89 chr11 7417607 7417988 -114425868 - ORR1C1 LTR MaLR -19 359 1 5 641 299 271 65 41 chr11 7417988 7418111 -114425745 + MLT1A0 LTR MaLR 226 351 -14 5 641 277 299 0 0 chr11 7420321 7420388 -114423468 + PB1 SINE Alu 1 67 -60 5 641 255 338 29 43 chr11 7420388 7420460 -114423396 + B4A SINE B4 86 222 -70 5 641 200 327 119 19 chr11 7420580 7420739 -114423117 - MIRb SINE MIR -79 189 15 5 641 244 344 0 0 chr11 7420913 7421003 -114422853 + CT-rich Low_complexity Low_complexity 1 90 0 5 641 240 349 35 11 chr11 7421007 7421094 -114422762 - ID4_ SINE ID -58 94 6 5 641 389 257 24 81 chr11 7421105 7421228 -114422628 - PB1D7 SINE Alu -2 118 3 5 641 312 83 0 0 chr11 7421730 7421778 -114422078 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 641 399 41 0 0 chr11 7421778 7421827 -114422029 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 641 391 259 12 0 chr11 7421829 7421914 -114421942 - B4A SINE B4 -7 285 200 5 641 678 291 114 11 chr11 7421923 7422187 -114421669 - Lx8 LINE L1 -12 7461 7171 5 641 1130 252 4 8 chr11 7422187 7422443 -114421413 + Lx7 LINE L1 5608 5862 -1834 5 641 399 304 17 102 chr11 7422747 7422923 -114420933 - Arthur1C DNA Tip100 0 363 203 5 641 486 0 0 0 chr11 7423157 7423211 -114420645 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 641 446 248 17 26 chr11 7423783 7423899 -114419957 - RLTR18 LTR ERVK -501 115 1 5 641 315 250 117 66 chr11 7423905 7424042 -114419814 - Lx7 LINE L1 -1145 6551 6408 5 641 297 0 0 0 chr11 7424141 7424174 -114419682 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 641 478 333 8 8 chr11 7424191 7424324 -114419532 - RSINE1 SINE B4 -30 135 3 5 641 268 280 190 37 chr11 7425413 7425576 -114418280 - RMER15 LTR ERVL -42 533 346 5 641 378 219 94 9 chr11 7425679 7425781 -114418075 - MTD LTR MaLR -31 388 278 5 641 2470 88 3 3 chr11 7425781 7426090 -114417766 + RLTR27 LTR ERVK 1 309 0 5 641 467 241 101 86 chr11 7426145 7426345 -114417511 - MTD LTR MaLR -120 287 88 5 641 252 250 86 29 chr11 7426406 7426476 -114417380 - MTD LTR MaLR -343 78 5 5 641 231 337 0 10 chr11 7426613 7426709 -114417147 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 641 447 342 80 60 chr11 7426882 7427268 -114416588 + MER47B DNA MER2_type 19 412 -6 5 641 1465 238 73 18 chr11 7427361 7427746 -114416110 + MTD LTR MaLR 12 417 -2 5 641 315 179 15 0 chr11 7428132 7428199 -114415657 - Lx6 LINE L1 -220 7240 7173 5 641 270 0 0 0 chr11 7428342 7428372 -114415484 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 641 274 274 8 136 chr11 7428675 7428793 -114415063 - L1M4 LINE L1 -1031 5115 5013 5 641 235 261 101 71 chr11 7430166 7430265 -114413591 + PB1D10 SINE Alu 4 105 -12 5 641 567 260 41 0 chr11 7430273 7430396 -114413460 + RSINE1 SINE B4 6 133 -32 5 641 423 0 0 0 chr11 7430397 7430444 -114413412 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 641 534 31 0 0 chr11 7430750 7430814 -114413042 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 641 415 327 18 12 chr11 7431255 7431422 -114412434 - MER97c DNA MER1_type? -877 213 46 5 641 549 0 0 0 chr11 7433235 7433296 -114410560 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 641 360 284 92 0 chr11 7433635 7433776 -114410080 - L1_Mur3 LINE L1 -1752 4128 3975 5 641 5946 41 3 3 chr11 7433794 7434482 -114409374 - L1Md_F2 LINE L1 0 6582 5895 5 641 394 270 65 14 chr11 7434506 7434613 -114409243 - RMER10A LTR ERVL -24 418 305 5 641 339 25 0 0 chr11 7434613 7434653 -114409203 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 641 537 252 296 55 chr11 7434653 7434898 -114408958 - RMER10A LTR ERVL -138 304 1 5 641 246 154 77 0 chr11 7435334 7435386 -114408470 - L1M2 LINE L1 -2202 3941 3886 5 641 427 288 174 35 chr11 7435386 7435703 -114408153 + L1M3 LINE L1 4584 4944 -1196 5 641 2228 123 3 0 chr11 7435705 7436022 -114407834 - ORR1A3 LTR MaLR -8 318 1 5 641 372 347 65 29 chr11 7436025 7436334 -114407522 + L1M3 LINE L1 4945 5264 -879 5 641 296 288 0 0 chr11 7436358 7436431 -114407425 + MTE2b LTR MaLR 199 271 -108 5 641 2332 141 123 27 chr11 7436458 7436865 -114406991 + RLTR41 LTR ERV1 1 446 0 5 641 256 239 15 15 chr11 7437448 7437516 -114406340 + MMERGLN-int LTR ERV1 587 654 -6902 5 641 1460 293 94 87 chr11 7437928 7438166 -114405690 + MMERGLN-int LTR ERV1 1070 1327 -6229 5 641 2908 36 45 0 chr11 7438166 7438497 -114405359 - ORR1A0 LTR MaLR 0 346 1 5 641 1460 293 94 87 chr11 7438497 7439606 -114404250 + MMERGLN-int LTR ERV1 1328 2427 -5129 5 641 256 264 14 27 chr11 7439952 7440026 -114403830 + (CATA)n Simple_repeat Simple_repeat 1 73 0 5 641 1267 275 41 17 chr11 7440302 7440664 -114403192 - MTEb LTR MaLR -8 371 1 5 641 1835 321 66 81 chr11 7440666 7441921 -114401935 - MTEb-int LTR MaLR -2 1578 343 5 641 611 236 144 74 chr11 7441942 7442076 -114401780 - Lx7 LINE L1 -1 7695 7577 5 641 309 26 0 0 chr11 7442076 7442114 -114401742 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 641 611 236 144 74 chr11 7442114 7442318 -114401538 - Lx7 LINE L1 -120 7576 7333 5 641 335 346 10 0 chr11 7442318 7442422 -114401434 - RSINE1 SINE B4 -59 106 2 5 641 304 301 89 26 chr11 7443138 7443407 -114400449 + L1MD2 LINE L1 5672 5962 -397 5 641 327 353 32 42 chr11 7443434 7443650 -114400206 + L1MD2 LINE L1 6037 6250 -109 5 641 660 257 23 59 chr11 7444235 7444247 -114399609 - B3 SINE B2 -5 211 200 5 641 513 0 0 0 chr11 7444247 7444304 -114399552 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 641 660 257 23 59 chr11 7444304 7444510 -114399346 - B3 SINE B2 -17 199 2 5 641 783 340 30 27 chr11 7444874 7445207 -114398649 + MT2A LTR ERVL 85 418 -115 5 641 243 291 99 19 chr11 7445228 7445389 -114398467 + MT2A LTR ERVL 358 531 -2 5 641 340 167 48 0 chr11 7445498 7445582 -114398274 + A-rich Low_complexity Low_complexity 2 89 0 5 641 201 164 32 27 chr11 7446460 7446520 -114397336 + MIR SINE MIR 201 265 -3 5 641 1821 169 118 6 chr11 7446672 7447011 -114396845 - ORR1C1 LTR MaLR -1 377 1 5 641 238 359 127 0 chr11 7448762 7448982 -114394874 - MER2B DNA MER2_type -23 313 66 5 641 185 0 40 0 chr11 7449169 7449194 -114394662 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 641 523 235 26 26 chr11 7449479 7449632 -114394224 - RLTR16 LTR ERVK -43 462 310 5 641 820 162 7 13 chr11 7449630 7449780 -114394076 - RLTR16 LTR ERVK -353 152 4 5 641 360 0 0 0 chr11 7449780 7449820 -114394036 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 641 493 313 7 7 chr11 7449837 7449988 -114393868 - RSINE1 SINE B4 -13 152 2 5 641 186 43 0 0 chr11 7450107 7450130 -114393726 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 5 641 255 246 16 0 chr11 7450135 7450196 -114393660 - ID4 SINE ID -13 70 9 5 641 916 106 13 7 chr11 7451284 7451436 -114392420 + (GGAAA)n Simple_repeat Simple_repeat 2 154 0 5 641 1155 227 0 0 chr11 7451700 7451916 -114391940 - B3 SINE B2 0 216 1 5 641 246 345 0 26 chr11 7453108 7453224 -114390632 + (TATG)n Simple_repeat Simple_repeat 3 115 0 6 641 276 313 0 0 chr11 7453140 7453223 -114390633 + (TG)n Simple_repeat Simple_repeat 2 84 0 6 641 367 304 74 106 chr11 7454077 7454360 -114389496 + MLT1J LTR MaLR 190 463 -49 6 641 309 100 0 0 chr11 7454951 7455001 -114388855 + (CAGA)n Simple_repeat Simple_repeat 4 53 0 6 641 379 163 55 28 chr11 7455535 7455680 -114388176 + RMER17B LTR ERVK 299 447 -511 6 641 272 200 0 13 chr11 7456111 7456187 -114387669 + CT-rich Low_complexity Low_complexity 3 77 0 6 641 208 264 52 43 chr11 7456285 7456400 -114387456 + MIRc SINE MIR 124 239 -29 6 641 668 276 73 0 chr11 7456766 7456958 -114386898 - B3 SINE B2 0 216 11 6 641 339 301 41 0 chr11 7457177 7457348 -114386508 - L1M2 LINE L1 -607 5684 5508 6 641 414 57 0 0 chr11 7457602 7457655 -114386201 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 641 315 0 0 0 chr11 7457655 7457689 -114386167 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 641 1077 279 78 21 chr11 7458366 7458729 -114385127 + MTD LTR MaLR 4 396 -23 6 641 216 0 0 0 chr11 7459441 7459465 -114384391 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 641 433 313 128 44 chr11 7459465 7460000 -114383856 + L1ME1 LINE L1 5559 6146 -1639 6 641 257 207 19 0 chr11 7460086 7460148 -114383708 - MTD LTR MaLR -14 405 297 6 641 740 83 18 0 chr11 7461118 7461227 -114382629 + Lx2 LINE L1 6886 6996 -1 6 641 214 178 0 0 chr11 7461888 7461933 -114381923 + T-rich Low_complexity Low_complexity 1 45 0 6 641 801 233 72 131 chr11 7462093 7462469 -114381387 + ORR1D2 LTR MaLR 12 370 0 6 641 240 35 0 0 chr11 7462647 7462676 -114381180 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6 641 1227 56 0 0 chr11 7462676 7462836 -114381020 - B2_Mm1t SINE B2 -33 160 1 6 641 1406 290 56 30 chr11 7464164 7464237 -114379619 - L1ME3B LINE L1 -309 5931 5860 6 641 4460 158 38 53 chr11 7464237 7465101 -114378755 - Lx4A LINE L1 -1 7057 6207 6 641 5033 112 25 3 chr11 7465101 7465835 -114378021 - L1_Mur2 LINE L1 -56 5821 5072 6 641 186 43 0 0 chr11 7466099 7466122 -114377734 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 641 550 253 6 71 chr11 7466127 7466310 -114377546 - B3A SINE B2 0 198 28 6 641 458 261 26 13 chr11 7466591 7466818 -114377038 + Lx9 LINE L1 7082 7347 -297 6 641 392 299 0 45 chr11 7468202 7468335 -114375521 + GA-rich Low_complexity Low_complexity 4 130 0 6 641 253 349 6 104 chr11 7469099 7469262 -114374594 + RSINE1 SINE B4 4 150 -15 6 641 827 214 88 5 chr11 7469474 7469698 -114374158 + RMER1C Other Other 934 1304 -38 6 641 291 212 121 0 chr11 7469782 7469848 -114374008 + PB1D10 SINE Alu 13 86 -63 6 642 3081 164 28 63 chr11 7472558 7473196 -114370660 - RLTR18 LTR ERVK 0 616 1 6 642 317 307 99 41 chr11 7473516 7473718 -114370138 - L1M5 LINE L1 -589 5584 5368 6 642 3130 65 5 2 chr11 7473718 7474117 -114369739 - MTB LTR MaLR 0 400 1 6 642 317 307 99 41 chr11 7474117 7474135 -114369721 - L1M5 LINE L1 -806 5367 5351 6 642 396 59 0 0 chr11 7474373 7474424 -114369432 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 6 642 270 207 190 0 chr11 7475200 7475258 -114368598 + PB1D7 SINE Alu 18 86 -34 6 642 1952 95 3 69 chr11 7475705 7476054 -114367802 - IAPLTR1a_Mm LTR ERVK -11 326 1 6 642 58900 11 5 9 chr11 7476054 7482567 -114361289 - IAPEz-int LTR ERVK 0 6481 1 6 642 1942 98 3 69 chr11 7482568 7482917 -114360939 - IAPLTR1a_Mm LTR ERVK -11 326 1 6 642 4493 12 2 0 chr11 7484055 7484547 -114359309 + MT2_Mm LTR ERVL 1 493 0 6 642 8875 45 9 5 chr11 7484549 7485642 -114358214 + MTA_Mm-int LTR MaLR 1 1098 0 6 642 3454 25 5 0 chr11 7485642 7486036 -114357820 + MTA_Mm LTR MaLR 1 396 0 6 642 48399 15 6 0 chr11 7486036 7491360 -114352496 + MERVL-int LTR ERVL 3 5360 -125 6 642 344 179 46 35 chr11 7491360 7491447 -114352409 + ORR1A3-int LTR MaLR 553 640 -1323 6 642 321 0 0 0 chr11 7491447 7491485 -114352371 + MERVL-int LTR ERVL 5448 5485 0 6 642 3944 12 2 0 chr11 7491485 7491967 -114351889 + MT2_Mm LTR ERVL 1 483 -10 6 642 894 124 36 0 chr11 7493253 7493390 -114350466 + B1_Mur4 SINE Alu 1 142 -8 6 642 230 0 33 0 chr11 7493394 7493424 -114350432 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 642 637 249 0 18 chr11 7494957 7495292 -114348564 + GA-rich Low_complexity Low_complexity 1 328 0 6 642 426 336 0 0 chr11 7495215 7495364 -114348492 + A-rich Low_complexity Low_complexity 1 149 0 6 642 274 261 115 98 chr11 7495598 7495832 -114348024 - L1M2 LINE L1 -617 5683 5446 6 642 1157 325 52 34 chr11 7495858 7496749 -114347107 - L1M2 LINE L1 -1820 4323 3417 6 642 1230 65 0 0 chr11 7496751 7497073 -114346783 + (TG)n Simple_repeat Simple_repeat 1 322 0 6 642 687 196 39 0 chr11 7497074 7497227 -114346629 - Lx9 LINE L1 -162 7482 7324 6 642 2232 240 34 16 chr11 7497227 7497786 -114346070 + Lx9 LINE L1 6759 7327 -317 6 642 578 229 96 14 chr11 7497781 7497989 -114345867 - L1_Mur3 LINE L1 -2543 3337 3113 6 642 466 97 14 0 chr11 7498087 7498159 -114345697 + L1_Mus2 LINE L1 6494 6566 0 6 642 276 46 278 97 chr11 7498174 7498246 -114345610 + B2_Mm2 SINE B2 70 154 -41 6 642 1124 316 67 94 chr11 7498274 7500000 -114343856 - L1_Rod LINE L1 -2904 2943 1265 6 642 180 0 0 0 chr11 7500300 7500320 -114343536 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 642 642 153 0 0 chr11 7501071 7501182 -114342674 + CT-rich Low_complexity Low_complexity 2 112 0 2 642 2145 207 37 2 chr11 7502949 7503351 -114340505 + MTD LTR MaLR 2 417 -2 3 642 236 204 40 20 chr11 7503356 7503406 -114340450 - tRNA-Leu-TTA tRNA tRNA 0 86 36 4 642 911 223 26 11 chr11 7504414 7504604 -114339252 - B3 SINE B2 -15 201 9 5 642 916 286 96 21 chr11 7505606 7505981 -114337875 + MLT1C LTR MaLR 59 461 -6 6 642 1536 246 18 12 chr11 7506329 7506670 -114337186 + MERVL_2A-int LTR ERVL 2310 2652 -3109 7 642 444 277 61 0 chr11 7507361 7507491 -114336365 + MERVL_2A-int LTR ERVL 2551 2767 -2994 7 642 754 146 44 0 chr11 7507496 7507633 -114336223 - URR1A DNA MER1_type -3 223 81 8 642 3432 250 57 9 chr11 7507677 7508526 -114335330 + MERVL_2A-int LTR ERVL 2796 3684 -2077 7 642 421 211 0 0 chr11 7508546 7508622 -114335234 - ORR1D2 LTR MaLR -8 362 287 9 642 848 37 9 0 chr11 7508699 7508807 -114335049 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 1 642 234 182 0 0 chr11 7508939 7509005 -114334851 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 1 642 207 0 319 0 chr11 7509005 7509152 -114334704 + (CCTA)n Simple_repeat Simple_repeat 1 193 0 1 642 730 294 59 56 chr11 7509273 7509561 -114334295 + MLT1A0 LTR MaLR 4 292 -73 1 642 207 100 0 0 chr11 7509649 7509679 -114334177 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 642 198 0 0 0 chr11 7509958 7509980 -114333876 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1 642 272 286 199 21 chr11 7510751 7510937 -114332919 + MLT1A LTR MaLR 33 251 -123 1 642 1079 283 115 25 chr11 7511054 7511450 -114332406 - L1MD3 LINE L1 -2098 5897 5464 1 642 1508 202 221 6 chr11 7511450 7511794 -114332062 + MTD LTR MaLR 2 419 0 1 642 1079 283 83 51 chr11 7511794 7512261 -114331595 - L1MD3 LINE L1 -2532 5463 4975 1 642 334 284 0 44 chr11 7512280 7512394 -114331462 + CT-rich Low_complexity Low_complexity 1 109 0 1 642 4277 149 12 26 chr11 7512613 7513303 -114330553 - Lx4A LINE L1 -1 7057 6378 2 642 402 314 0 44 chr11 7513305 7513488 -114330368 - L1MC4a LINE L1 -171 7711 7537 2 642 678 312 102 75 chr11 7513552 7513874 -114329982 - MTEa LTR MaLR -31 348 18 2 642 430 339 112 30 chr11 7513956 7514174 -114329682 - L1MC4a LINE L1 -452 7430 7207 2 642 495 0 0 0 chr11 7514174 7514229 -114329627 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 642 430 339 112 30 chr11 7514229 7514240 -114329616 - L1MC4a LINE L1 -676 7206 7185 2 642 946 222 38 29 chr11 7514240 7514449 -114329407 - B3 SINE B2 -2 214 4 2 642 423 0 0 0 chr11 7514454 7514501 -114329355 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 642 430 339 112 30 chr11 7514501 7514727 -114329129 - L1MC4a LINE L1 -721 7161 6934 2 642 605 312 55 128 chr11 7515434 7515981 -114327875 - Lx8 LINE L1 -52 7421 6915 2 642 461 288 109 64 chr11 7516334 7516601 -114327255 - Tigger6a DNA MER2_type -24 1059 781 2 642 430 345 60 7 chr11 7517331 7517480 -114326376 + B3A SINE B2 24 180 -18 2 642 28 0 0 0 chr11 7517761 7517789 -114326067 + AT_rich Low_complexity Low_complexity 1 28 0 2 642 10235 3 0 0 chr11 7517802 7519614 -114324242 - L1Md_A LINE L1 0 6582 4771 3 642 204 179 0 0 chr11 7521497 7521536 -114322320 + T-rich Low_complexity Low_complexity 1 39 0 3 642 4394 175 47 23 chr11 7522884 7523762 -114320094 - RMER13B LTR ERVK -9 899 1 3 642 812 295 64 9 chr11 7524610 7524938 -114318918 + L1MB3 LINE L1 5718 6063 -120 3 642 339 159 44 9 chr11 7525974 7526088 -114317768 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 642 753 320 65 53 chr11 7526107 7526493 -114317363 - MTE2a LTR MaLR -33 386 20 3 642 362 134 15 0 chr11 7526840 7526907 -114316949 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 3 642 463 237 32 0 chr11 7526928 7527021 -114316835 - B1_Mur2 SINE Alu -8 141 46 3 642 288 0 0 0 chr11 7527889 7527921 -114315935 + (T)n Simple_repeat Simple_repeat 1 32 0 3 642 1216 68 0 7 chr11 7527921 7528068 -114315788 - B1_Mus2 SINE Alu 0 147 2 3 642 669 226 0 0 chr11 7528259 7528383 -114315473 - RSINE1 SINE B4 -38 127 4 4 642 182 37 0 36 chr11 7528523 7528551 -114315305 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 642 359 304 54 0 chr11 7528684 7528796 -114315060 - RSINE1 SINE B4 -28 137 20 4 642 259 371 23 0 chr11 7529105 7529237 -114314619 - L1MC4 LINE L1 -1070 6972 6838 4 642 503 213 145 14 chr11 7529601 7529739 -114314117 + B3A SINE B2 1 156 -42 4 642 1365 163 18 5 chr11 7530988 7531210 -114312646 - URR1B DNA MER1_type 0 225 1 4 642 188 320 25 62 chr11 7532387 7532467 -114311389 - L2c LINE L2 -17 3370 3294 4 642 23 0 0 0 chr11 7533036 7533059 -114310797 + AT_rich Low_complexity Low_complexity 1 23 0 4 642 329 260 292 0 chr11 7533124 7533220 -114310636 - RSINE1 SINE B4 -29 136 13 4 642 267 293 0 0 chr11 7534254 7534329 -114309527 - RLTR19-int LTR ERVK -2030 4107 4033 4 642 604 208 0 74 chr11 7534343 7534478 -114309378 + ORR1B2 LTR MaLR 1 125 -242 5 642 3714 99 59 16 chr11 7534479 7534817 -114309039 + L1VL4 LINE L1 390 728 -5574 5 642 534 31 0 0 chr11 7534817 7534881 -114308975 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 5 642 9270 85 9 2 chr11 7534881 7536271 -114307585 + L1VL4 LINE L1 729 2147 -1412 5 642 3633 130 18 1 chr11 7536262 7536996 -114306860 + Lx2 LINE L1 5248 6003 -994 5 642 1676 37 60 9 chr11 7536996 7537213 -114306643 + MT2_Mm LTR ERVL 266 493 0 5 642 4278 121 6 6 chr11 7537222 7537854 -114306002 + Lx2 LINE L1 6016 6647 -350 5 642 1178 141 82 0 chr11 7537850 7537942 -114305914 + Lx2 LINE L1 6775 6866 -131 5 642 189 0 0 0 chr11 7537942 7537963 -114305893 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 5 642 1178 141 82 0 chr11 7537963 7538076 -114305780 + Lx2 LINE L1 6867 6995 -2 5 642 306 170 0 0 chr11 7538136 7538189 -114305667 + L1MB8 LINE L1 6120 6172 -6 5 642 555 16 0 0 chr11 7538203 7538267 -114305589 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 642 348 24 0 0 chr11 7538392 7538433 -114305423 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 642 1257 165 63 37 chr11 7538434 7538704 -114305152 - RLTR46 LTR ERVK -2 318 42 5 642 768 71 0 0 chr11 7538712 7538824 -114305032 + (GA)n Simple_repeat Simple_repeat 1 112 0 6 642 1104 106 37 13 chr11 7539468 7539676 -114304180 - ORR1B1 LTR MaLR 0 394 146 6 642 414 225 226 6 chr11 7539849 7540030 -114303826 - RLTR42-int LTR ERVK -3179 2343 2123 6 642 347 180 0 0 chr11 7540099 7540160 -114303696 - RLTR42-int LTR ERVK -3540 1982 1922 6 642 3042 37 8 3 chr11 7540345 7540696 -114303160 - L1_Mus1 LINE L1 0 6567 6215 6 642 546 121 37 22 chr11 7540714 7540849 -114303007 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 6 642 246 210 0 0 chr11 7540864 7540983 -114302873 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 6 642 428 324 60 33 chr11 7542107 7542289 -114301567 - RMER15 LTR ERVL -40 535 349 6 642 225 0 0 0 chr11 7542383 7542408 -114301448 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 642 1106 71 0 0 chr11 7542421 7542562 -114301294 - B1_Mus1 SINE Alu 0 148 8 6 642 11308 133 65 2 chr11 7542761 7545525 -114298331 - L1_Mus4 LINE L1 -2 6634 3667 6 642 6984 100 14 16 chr11 7545524 7546605 -114297251 - L1VL4 LINE L1 -1440 2119 1041 7 642 606 28 0 0 chr11 7546605 7546677 -114297179 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 7 642 6984 201 107 19 chr11 7546677 7547057 -114296799 - L1VL4 LINE L1 -2519 1040 346 7 642 247 250 12 12 chr11 7547108 7547189 -114296667 - L1MC3 LINE L1 -2 7783 7703 7 642 448 257 67 98 chr11 7547224 7547448 -114296408 + RMER5 LTR ERV1 22 238 -296 7 642 1315 41 0 7 chr11 7547849 7547997 -114295859 - B1_Mm SINE Alu 0 147 1 7 642 2022 224 12 12 chr11 7548272 7548688 -114295168 + MTD LTR MaLR 4 419 0 7 642 228 270 30 119 chr11 7550529 7550697 -114293159 - YREP_Mm Unknown Unknown -1480 332 180 7 642 878 174 0 0 chr11 7550562 7550700 -114293156 + B1_Mus1 SINE Alu 11 148 0 7 642 208 115 37 37 chr11 7550713 7550767 -114293089 + A-rich Low_complexity Low_complexity 3 56 0 7 642 324 0 0 0 chr11 7551090 7551126 -114292730 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 642 255 383 19 68 chr11 7551166 7551373 -114292483 + L1MDa LINE L1 593 789 -5844 8 642 2899 166 30 30 chr11 7551456 7551983 -114291873 + RLTR11A2 LTR ERVK 1 527 0 8 642 451 257 55 16 chr11 7552300 7552482 -114291374 + L1MA6 LINE L1 6112 6300 0 8 642 407 323 46 0 chr11 7552478 7552695 -114291161 + L1MDa LINE L1 1589 1815 -4818 8 642 471 322 54 14 chr11 7552823 7553100 -114290756 + L1MDa LINE L1 2023 2310 -4323 8 642 29646 58 2 6 chr11 7553880 7559489 -114284367 + L1Md_F2 LINE L1 557 6091 -491 8 642 3671 62 20 6 chr11 7559504 7559993 -114283863 + LTRIS2 LTR ERV1 69 564 0 8 642 3769 65 6 2 chr11 7559993 7560485 -114283371 + L1Md_F2 LINE L1 6089 6582 0 8 642 1975 164 80 13 chr11 7561034 7561423 -114282433 + MTD LTR MaLR 1 415 -4 8 642 1706 180 106 19 chr11 7561464 7561832 -114282024 - MTB_Mm LTR MaLR -7 400 1 8 642 1490 285 85 28 chr11 7561832 7562853 -114281003 + Lx8 LINE L1 5107 6187 -1286 8 642 313 275 96 27 chr11 7563014 7563160 -114280696 - L1M5 LINE L1 -2847 3299 3144 8 642 320 266 155 66 chr11 7563300 7563481 -114280375 - B3A SINE B2 0 198 2 8 642 938 211 104 18 chr11 7563601 7563809 -114280047 - B3 SINE B2 -6 210 6 9 642 263 181 19 0 chr11 7563904 7564009 -114279847 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 9 642 300 292 118 16 chr11 7564029 7564310 -114279546 - L1M5 LINE L1 -3187 2959 2651 8 642 733 203 8 0 chr11 7565613 7565746 -114278110 + B1_Mur3 SINE Alu 1 134 -15 9 642 302 143 39 13 chr11 7568477 7568555 -114275301 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 9 642 279 0 0 0 chr11 7569418 7569449 -114274407 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 642 438 282 130 0 chr11 7569791 7569922 -114273934 + B1F SINE Alu 1 148 -1 9 642 188 341 124 45 chr11 7571838 7572016 -114271840 + L2 LINE L2 2222 2413 -1006 9 642 406 326 148 61 chr11 7572083 7572361 -114271495 - RMER15 LTR ERVL 0 575 274 9 642 242 252 7 207 chr11 7572409 7572544 -114271312 - RMER15 LTR ERVL -467 108 1 9 642 1556 267 53 43 chr11 7572629 7573138 -114270718 - RMER15-int LTR ERVL -110 4889 4376 9 642 368 333 17 8 chr11 7573210 7573328 -114270528 - Lx8 LINE L1 -1157 6316 6198 9 642 1877 213 40 11 chr11 7573399 7573778 -114270078 + MTD LTR MaLR 12 401 -18 9 642 717 310 123 61 chr11 7573890 7574450 -114269406 - RMER15-int LTR ERVL -2778 2221 1627 9 642 288 0 0 0 chr11 7574450 7574482 -114269374 + (T)n Simple_repeat Simple_repeat 1 32 0 1 642 912 336 47 31 chr11 7574869 7575221 -114268635 - RMER15-int LTR ERVL -3866 1133 791 9 642 2062 169 27 3 chr11 7575221 7575589 -114268267 - ORR1C1 LTR MaLR 0 378 2 1 642 912 336 47 31 chr11 7575589 7575724 -114268132 - RMER15-int LTR ERVL -4209 790 638 9 642 4392 32 2 6 chr11 7575724 7576251 -114267605 + L1Md_F2 LINE L1 6055 6579 -3 1 642 555 338 39 16 chr11 7576391 7576701 -114267155 - RMER15-int LTR ERVL -4682 317 1 9 642 685 372 21 21 chr11 7576730 7577010 -114266846 - RMER15 LTR ERVL -21 554 275 9 642 445 314 25 25 chr11 7577009 7577166 -114266690 - RMER15 LTR ERVL -416 159 3 9 642 245 321 44 18 chr11 7577196 7577310 -114266546 + L2 LINE L2 2519 2635 -784 9 642 4601 210 73 48 chr11 7577310 7578593 -114265263 + RLTR21 LTR ERVK 10 1404 0 1 642 327 25 0 0 chr11 7579130 7579170 -114264686 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 642 3112 45 3 0 chr11 7580585 7580964 -114262892 - L1Md_F2 LINE L1 -2 6580 6201 1 642 5103 95 4 0 chr11 7580964 7581698 -114262158 - L1Md_F LINE L1 -5514 1005 269 1 642 918 216 62 0 chr11 7581814 7582008 -114261848 - B3 SINE B2 -7 209 4 1 642 1344 111 0 23 chr11 7582066 7582287 -114261569 - L1Md_F2 LINE L1 -1 6581 6366 1 642 2656 222 5 24 chr11 7582314 7582895 -114260961 - Lx5 LINE L1 -1 7049 6480 1 642 1708 164 73 3 chr11 7582895 7583066 -114260790 - ORR1A1 LTR MaLR -7 339 154 1 642 1012 122 0 39 chr11 7583066 7583219 -114260637 + B1_Mus1 SINE Alu 2 148 0 1 642 1708 164 73 3 chr11 7583219 7583235 -114260621 - ORR1A1 LTR MaLR -193 153 130 1 642 384 40 0 0 chr11 7583235 7583285 -114260571 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 642 1708 164 73 3 chr11 7583285 7583413 -114260443 - ORR1A1 LTR MaLR -217 129 3 1 642 3747 201 51 14 chr11 7583413 7583670 -114260186 - Lx5 LINE L1 -563 6487 6232 1 642 971 128 67 6 chr11 7583670 7583850 -114260006 + Lx3_Mus LINE L1 6814 7004 -5 1 642 3747 201 51 14 chr11 7583850 7584324 -114259532 - Lx5 LINE L1 -819 6231 5746 1 642 237 65 0 0 chr11 7584324 7584355 -114259501 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 642 3747 169 57 61 chr11 7584355 7584666 -114259190 - Lx5 LINE L1 -1305 5745 5421 1 642 195 42 0 0 chr11 7584666 7584690 -114259166 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 642 2173 169 57 61 chr11 7584690 7584767 -114259089 - Lx5 LINE L1 -457 5420 5352 1 642 4507 85 2 2 chr11 7584793 7585392 -114258464 - L1_Mus1 LINE L1 -1 6566 5968 1 642 5784 262 61 32 chr11 7585392 7589596 -114254260 - ETnERV2-int LTR ERVK -2402 5004 2 1 642 2328 146 23 25 chr11 7589602 7589997 -114253859 - RLTR9D LTR ERVK -9 394 1 1 642 22758 109 5 44 chr11 7589997 7591632 -114252224 - L1Md_F LINE L1 -899 4984 3347 1 642 744 94 0 0 chr11 7591632 7591738 -114252118 + (TC)n Simple_repeat Simple_repeat 2 107 0 1 642 1010 47 8 0 chr11 7591738 7591867 -114251989 - B1_Mm SINE Alu -9 138 9 1 642 22758 146 32 80 chr11 7591867 7595056 -114248800 - L1Md_F LINE L1 -2537 3346 261 1 642 192 143 0 0 chr11 7595065 7595107 -114248749 + (G)n Simple_repeat Simple_repeat 1 42 0 1 642 2738 167 13 7 chr11 7595129 7595671 -114248185 - L1_Mur2 LINE L1 -515 5362 4818 1 642 836 305 68 29 chr11 7595839 7596036 -114247820 - MTEa LTR MaLR 0 379 177 1 642 303 28 0 0 chr11 7596036 7596072 -114247784 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 642 836 308 64 41 chr11 7596072 7596237 -114247619 - MTEa LTR MaLR -203 176 21 1 642 561 297 10 59 chr11 7596223 7596371 -114247485 - MTE2b-int LTR MaLR -10 1570 1429 1 642 1117 141 22 0 chr11 7596371 7596556 -114247300 + B2_Mm2 SINE B2 1 189 -6 1 642 561 297 10 59 chr11 7596556 7596611 -114247245 - MTE2b-int LTR MaLR -152 1428 1377 1 642 1577 209 22 0 chr11 7596653 7596930 -114246926 + MTC LTR MaLR 87 369 -52 1 642 1343 297 103 13 chr11 7596929 7597386 -114246470 - MTE2b-int LTR MaLR -721 859 362 1 642 1897 172 86 6 chr11 7597392 7597742 -114246114 - ORR1B1 LTR MaLR -8 386 9 1 642 1099 315 34 0 chr11 7597752 7598101 -114245755 - MTE2b-int LTR MaLR -1218 362 2 1 642 227 55 18 53 chr11 7598122 7598179 -114245677 + (TTTG)n Simple_repeat Simple_repeat 3 57 0 1 642 622 298 26 10 chr11 7598181 7598374 -114245482 - MTE2b LTR MaLR 0 379 184 1 642 1909 178 19 75 chr11 7598374 7598745 -114245111 + ORR1B1 LTR MaLR 1 350 -44 1 642 474 314 43 7 chr11 7598755 7598893 -114244963 - MTE2b LTR MaLR -199 180 38 1 642 2270 237 66 7 chr11 7599001 7599091 -114244765 - RLTR20B3 LTR ERVK 0 577 483 1 642 387 0 0 0 chr11 7599091 7599134 -114244722 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 642 2270 237 66 7 chr11 7599134 7599588 -114244268 - RLTR20B3 LTR ERVK -95 482 3 1 642 485 250 97 9 chr11 7599588 7599701 -114244155 - B3A SINE B2 -75 123 1 1 642 776 318 35 35 chr11 7600395 7600679 -114243177 + MLT2C1 LTR ERVL 20 303 -94 1 642 381 277 87 7 chr11 7600846 7600984 -114242872 + Lx9 LINE L1 7181 7329 -315 1 80 6064 99 5 19 chr11 7601019 7602221 -114241635 + L1VL4 LINE L1 51 1232 -2327 1 643 9366 150 13 8 chr11 7602216 7603930 -114239926 + Lx LINE L1 4136 5858 -25 1 643 306 0 0 0 chr11 7603930 7603964 -114239892 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 643 5986 179 43 33 chr11 7603964 7605064 -114238792 + Lx LINE L1 5859 7644 0 1 643 707 345 81 51 chr11 7606713 7607181 -114236675 + MER74A LTR ERVL 47 528 -30 1 643 386 330 0 0 chr11 7607394 7607494 -114236362 + MTEb LTR MaLR 28 127 -252 1 643 1553 187 72 10 chr11 7607495 7607787 -114236069 - MTC LTR MaLR -8 413 104 1 643 1798 196 80 14 chr11 7607793 7608217 -114235639 - RMER1B Other Other -5 1061 610 1 643 539 209 41 97 chr11 7608217 7608449 -114235407 - MTC LTR MaLR -195 201 1 1 643 719 285 68 11 chr11 7608449 7608649 -114235207 + MTEa LTR MaLR 123 332 -47 1 643 495 0 0 0 chr11 7608695 7608750 -114235106 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 643 293 346 9 71 chr11 7608970 7609082 -114234774 - B4A SINE B4 -167 125 21 1 643 473 287 64 14 chr11 7609237 7609456 -114234400 - L1_Rod LINE L1 -11 5836 5607 1 643 342 308 31 52 chr11 7609513 7609684 -114234172 - Lx8 LINE L1 -986 6710 6553 1 643 2740 34 0 0 chr11 7609714 7610040 -114233816 - IAPEY2_LTR LTR ERVK 0 357 32 1 643 1058 276 57 22 chr11 7610054 7610461 -114233395 + Lx8 LINE L1 6769 7189 -284 1 643 1041 301 29 38 chr11 7610469 7610918 -114232938 - Lx8 LINE L1 -929 6544 6100 1 643 2182 191 17 14 chr11 7610918 7611338 -114232518 - MTC LTR MaLR 0 421 1 1 643 229 0 0 0 chr11 7611338 7611366 -114232490 - MTC-int LTR MaLR 0 1258 1231 1 643 1339 170 0 0 chr11 7611436 7611659 -114232197 - Lx2 LINE L1 0 6997 6775 1 643 6593 135 18 1 chr11 7611662 7613011 -114230845 - Lx2 LINE L1 -357 6640 5259 1 643 3795 93 2 12 chr11 7613013 7613613 -114230243 - MusHAL1 LINE L1 -1412 1300 707 1 643 613 147 0 0 chr11 7613602 7613711 -114230145 - L1_Mur3 LINE L1 -488 5392 5284 1 643 679 159 32 0 chr11 7613719 7613876 -114229980 - L1_Mm LINE L1 -3693 2190 2029 1 643 1111 106 0 22 chr11 7613879 7614063 -114229793 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 643 1196 54 0 13 chr11 7614065 7614214 -114229642 - B1_Mus2 SINE Alu 0 147 1 1 643 3597 85 21 3 chr11 7614214 7614795 -114229061 - L1VL4 LINE L1 -1870 1689 1099 1 643 37829 28 2 6 chr11 7614798 7620996 -114222860 - L1Md_T LINE L1 0 6582 413 1 643 3252 115 37 7 chr11 7620997 7621675 -114222181 - L1VL4 LINE L1 -2449 1110 411 1 643 921 224 66 0 chr11 7621675 7621858 -114221998 - MTC-int LTR MaLR -728 530 336 1 643 861 244 0 0 chr11 7621921 7622101 -114221755 - ORR1C2 LTR MaLR -32 387 208 1 643 226 337 0 0 chr11 7622103 7622198 -114221658 + GA-rich Low_complexity Low_complexity 2 96 0 1 643 835 267 107 5 chr11 7622211 7622407 -114221449 - 7SLRNA srpRNA srpRNA -94 220 5 1 643 946 192 0 6 chr11 7622408 7622576 -114221280 - ORR1C2 LTR MaLR -217 167 1 1 643 454 336 122 5 chr11 7623667 7623888 -114219968 - MER74A LTR ERVL -116 442 196 1 643 325 319 0 0 chr11 7624058 7624130 -114219726 - tRNA-Ala-GCY_ tRNA tRNA -2 73 2 1 643 6724 86 2 6 chr11 7624491 7625467 -114218389 - L1_Mus4 LINE L1 -1 6635 5664 1 643 252 262 295 0 chr11 7625774 7625923 -114217933 - L1MC3 LINE L1 -278 7507 7315 1 643 2713 181 5 117 chr11 7626104 7626812 -114217044 + L1_Mur2 LINE L1 4191 4836 -1041 1 643 1700 16 0 0 chr11 7626812 7627004 -114216852 - B2_Mm1a SINE B2 0 193 2 1 643 2713 181 5 117 chr11 7627004 7627075 -114216781 + L1_Mur2 LINE L1 4837 4883 -994 1 643 237 219 42 50 chr11 7627084 7627204 -114216652 - L1_Rod LINE L1 -2673 3174 3056 1 643 336 326 54 0 chr11 7628416 7628563 -114215293 - L1MD LINE L1 -1259 4887 4733 1 643 2300 164 58 32 chr11 7628573 7628641 -114215215 - L1_Mur2 LINE L1 -820 5057 4994 1 643 2497 147 11 46 chr11 7628641 7629076 -114214780 - RLTR9B2 LTR ERVK 0 420 1 1 643 2300 164 58 32 chr11 7629076 7629537 -114214319 - L1_Mur2 LINE L1 -884 4993 4514 1 643 1874 312 9 14 chr11 7629553 7630118 -114213738 + Lx5 LINE L1 6455 7016 -34 1 643 312 231 229 26 chr11 7630219 7630486 -114213370 - L1MD LINE L1 -1437 4709 4389 1 643 333 0 0 0 chr11 7630545 7630582 -114213274 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 643 351 263 53 77 chr11 7630583 7630752 -114213104 - L1MD LINE L1 -1868 4278 4114 1 643 519 274 90 57 chr11 7631003 7631282 -114212574 - L1MD LINE L1 -2011 4135 3848 1 643 465 325 103 7 chr11 7631380 7631523 -114212333 - L1MD LINE L1 -2352 3794 3641 1 643 1061 73 73 0 chr11 7631523 7631687 -114212169 + L1Md_F2 LINE L1 6407 6582 0 1 643 465 325 103 7 chr11 7631687 7631816 -114212040 - L1MD LINE L1 -2506 3640 3497 1 643 479 17 17 0 chr11 7632165 7632225 -114211631 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 643 1430 235 88 9 chr11 7633933 7634272 -114209584 + ORR1D1 LTR MaLR 4 369 -5 1 643 196 349 15 0 chr11 7634279 7634345 -114209511 - MER5A DNA MER1_type -95 94 28 1 643 1127 249 162 5 chr11 7634957 7635299 -114208557 + MTD LTR MaLR 20 404 -15 1 643 566 126 52 0 chr11 7635412 7635547 -114208309 + CT-rich Low_complexity Low_complexity 1 142 0 1 643 663 196 0 0 chr11 7636641 7636779 -114207077 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 643 21 36 0 0 chr11 7637018 7637046 -114206810 + AT_rich Low_complexity Low_complexity 1 28 0 1 643 218 179 0 0 chr11 7638200 7638239 -114205617 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 643 525 211 57 57 chr11 7638937 7639022 -114204834 + B3 SINE B2 76 155 -61 1 643 405 0 0 0 chr11 7639022 7639067 -114204789 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 643 525 211 57 57 chr11 7639067 7639122 -114204734 + B3 SINE B2 156 216 0 1 643 25 0 0 0 chr11 7639178 7639203 -114204653 + AT_rich Low_complexity Low_complexity 1 25 0 1 643 476 314 68 11 chr11 7639630 7639807 -114204049 + MER58A DNA MER1_type 38 224 0 1 643 261 180 0 0 chr11 7640241 7640291 -114203565 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 1 643 560 256 51 13 chr11 7640741 7640899 -114202957 - RSINE1 SINE B4 0 165 2 1 643 918 356 39 28 chr11 7641221 7641585 -114202271 + Tigger7 DNA MER2_type 3 370 -2121 1 643 1057 169 48 0 chr11 7641590 7641779 -114202077 + URR1A DNA MER1_type 17 214 -12 1 643 516 290 34 118 chr11 7641788 7642050 -114201806 + Tigger7 DNA MER2_type 361 600 -1891 1 643 542 242 133 0 chr11 7642474 7642594 -114201262 - RMER13B LTR ERVK 0 908 773 1 643 3564 88 2 0 chr11 7642594 7643108 -114200748 - L1_Mm LINE L1 -840 5043 4529 1 643 2296 38 0 73 chr11 7643108 7643424 -114200432 + L1_Mus1 LINE L1 6275 6567 0 1 643 4165 174 60 9 chr11 7643425 7644175 -114199681 - RMER13B LTR ERVK -120 788 1 1 643 695 205 0 53 chr11 7644175 7644331 -114199525 - URR1B DNA MER1_type -20 205 59 1 643 919 225 29 34 chr11 7644879 7645073 -114198783 + B3 SINE B2 1 196 -20 1 643 979 166 44 0 chr11 7645073 7645254 -114198602 + B2_Mm2 SINE B2 2 190 -5 1 643 919 225 29 34 chr11 7645254 7645266 -114198590 + B3 SINE B2 197 206 -10 1 643 544 285 59 108 chr11 7645295 7645684 -114198172 + L1M4 LINE L1 4578 4947 -1199 1 643 277 355 0 0 chr11 7646213 7646323 -114197533 - PB1D10 SINE Alu -7 110 1 1 643 485 295 130 11 chr11 7647216 7647401 -114196455 + B3 SINE B2 4 210 -6 2 643 291 28 0 0 chr11 7647533 7647569 -114196287 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 643 3262 36 13 3 chr11 7647669 7648061 -114195795 - MTA_Mm LTR MaLR 0 396 1 2 643 567 0 0 0 chr11 7648242 7648305 -114195551 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 643 627 342 152 0 chr11 7648591 7648921 -114194935 - MLT1E3 LTR MaLR -9 615 236 2 643 252 308 0 0 chr11 7648963 7649041 -114194815 - MLT1E3 LTR MaLR -467 157 80 2 643 22 0 0 0 chr11 7649856 7649878 -114193978 + AT_rich Low_complexity Low_complexity 1 22 0 2 643 243 309 0 0 chr11 7650000 7650055 -114193801 + polypyrimidine Low_complexity Low_complexity 1 55 0 2 643 915 131 28 0 chr11 7650055 7650276 -114193580 + CT-rich Low_complexity Low_complexity 1 227 0 2 643 434 248 43 34 chr11 7650385 7650502 -114193354 - B1F SINE Alu -5 144 27 2 643 3916 82 15 9 chr11 7650528 7651097 -114192759 - RLTR13D1 LTR ERVK 0 893 227 2 643 3101 137 26 21 chr11 7651078 7651608 -114192248 - RLTR13D1 LTR ERVK -369 533 1 2 643 783 110 0 0 chr11 7651610 7651737 -114192119 + Lx2B LINE L1 6348 6474 -526 2 643 1082 191 60 32 chr11 7651717 7651998 -114191858 + Lx2B LINE L1 6701 6989 -11 2 643 405 291 194 26 chr11 7652657 7653161 -114190695 + L1MC3 LINE L1 5838 6426 -1359 2 643 316 324 9 37 chr11 7653731 7653840 -114190016 - ID_B1 SINE B4 -15 209 104 2 643 365 279 37 37 chr11 7653743 7653851 -114190005 - B1F SINE Alu -31 118 11 2 643 351 105 0 0 chr11 7654997 7655054 -114188802 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 2 643 1241 28 0 0 chr11 7656226 7656368 -114187488 + B1_Mm SINE Alu 1 142 -5 2 643 444 37 0 0 chr11 7656373 7656427 -114187429 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 2 643 488 343 105 0 chr11 7656968 7657207 -114186649 + MLT1C LTR MaLR 174 437 -30 2 643 1140 268 29 48 chr11 7659123 7659499 -114184357 + ORR1D2 LTR MaLR 2 370 0 2 643 461 310 90 39 chr11 7660339 7660517 -114183339 - B3A SINE B2 -4 194 8 2 643 21 0 0 0 chr11 7660548 7660569 -114183287 + AT_rich Low_complexity Low_complexity 1 21 0 2 643 1296 291 17 22 chr11 7660970 7661332 -114182524 + ORR1D2 LTR MaLR 5 364 -6 2 643 1732 166 30 3 chr11 7661484 7661786 -114182070 - ORR1B1 LTR MaLR 0 394 85 2 643 4794 274 78 25 chr11 7661782 7661981 -114181875 - MTEa-int LTR MaLR -63 1517 1313 2 643 3464 23 2 2 chr11 7661981 7662377 -114181479 + MTA_Mm LTR MaLR 1 396 0 2 643 4794 274 78 25 chr11 7662377 7663616 -114180240 - MTEa-int LTR MaLR -268 1312 3 2 643 958 297 59 6 chr11 7663618 7663974 -114179882 - MTEa LTR MaLR 0 379 5 2 643 798 210 0 0 chr11 7664296 7664434 -114179422 - B1_Mur1 SINE Alu -9 140 3 2 643 200 279 29 14 chr11 7666237 7666306 -114177550 - MIRc SINE MIR -117 151 82 2 643 4098 125 102 5 chr11 7666786 7667542 -114176314 - L1_Mm LINE L1 -2041 3842 3014 2 643 5400 101 73 67 chr11 7667538 7668507 -114175349 + L1_Mus2 LINE L1 5592 6566 0 2 643 23 86 0 0 chr11 7669149 7669207 -114174649 + AT_rich Low_complexity Low_complexity 1 58 0 2 643 616 325 34 9 chr11 7669227 7669460 -114174396 - Lx7 LINE L1 -839 6857 6619 2 643 488 343 105 0 chr11 7669570 7669809 -114174047 - MLT1C LTR MaLR -30 437 174 2 643 444 37 0 0 chr11 7670350 7670404 -114173452 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 2 643 1241 28 0 0 chr11 7670409 7670551 -114173305 - B1_Mm SINE Alu -5 142 1 2 643 351 105 0 0 chr11 7671723 7671780 -114172076 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 2 643 365 279 37 37 chr11 7672926 7673034 -114170822 + B1F SINE Alu 11 118 -31 2 643 316 324 9 37 chr11 7672937 7673046 -114170810 + ID_B1 SINE B4 104 209 -15 2 643 405 291 194 26 chr11 7673616 7674120 -114169736 - L1MC3 LINE L1 -1359 6426 5838 2 643 1082 191 60 32 chr11 7674779 7675060 -114168796 - Lx2B LINE L1 -11 6989 6701 2 643 783 110 0 0 chr11 7675040 7675167 -114168689 - Lx2B LINE L1 -526 6474 6348 2 643 3947 144 48 54 chr11 7675169 7676237 -114167619 + RLTR13D1 LTR ERVK 1 1023 0 2 643 3930 149 35 4 chr11 7676237 7676951 -114166905 - Lx2B LINE L1 -649 6351 5616 2 643 2545 147 15 21 chr11 7676950 7677429 -114166427 + Lx2B LINE L1 5124 5599 -278 2 643 282 116 0 0 chr11 7677695 7677738 -114166118 + (T)n Simple_repeat Simple_repeat 1 43 0 2 643 223 254 0 15 chr11 7677938 7678006 -114165850 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 643 26 30 0 0 chr11 7678123 7678156 -114165700 + AT_rich Low_complexity Low_complexity 1 33 0 2 643 2265 177 97 15 chr11 7678794 7679269 -114164587 + RLTR12B LTR ERVK 1 514 -14 2 643 26 82 0 0 chr11 7679601 7679662 -114164194 + AT_rich Low_complexity Low_complexity 1 61 0 2 643 202 341 7 36 chr11 7680008 7680027 -114163829 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 2 643 189 107 0 0 chr11 7680027 7680055 -114163801 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 643 263 330 10 0 chr11 7680055 7680172 -114163684 + (TATG)n Simple_repeat Simple_repeat 1 118 0 2 643 2595 68 39 0 chr11 7681866 7682202 -114161654 - L1_Mus1 LINE L1 0 6567 6219 2 643 208 269 15 0 chr11 7682263 7682330 -114161526 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 643 458 203 8 0 chr11 7683030 7683148 -114160708 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 643 404 261 92 28 chr11 7683995 7684137 -114159719 + L1MC LINE L1 3023 3173 -2973 2 643 550 301 73 101 chr11 7684187 7684682 -114159174 + L1M5 LINE L1 3157 3637 -2509 2 643 2569 181 20 21 chr11 7685160 7685851 -114158005 + Lx4B LINE L1 6265 6970 -6 2 643 261 0 0 0 chr11 7687367 7687396 -114156460 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 643 4087 229 86 35 chr11 7688093 7690079 -114153777 + Lx9 LINE L1 5411 7643 -1 2 643 1236 313 64 76 chr11 7690211 7690660 -114153196 + Lx8 LINE L1 6036 6478 -995 2 643 1213 54 0 0 chr11 7690660 7690807 -114153049 - B1_Mus1 SINE Alu 0 148 2 2 643 1236 313 64 76 chr11 7690807 7691149 -114152707 + Lx8 LINE L1 6479 6818 -655 2 643 2968 68 10 0 chr11 7691165 7691549 -114152307 - RLTR10 LTR ERVK -2 388 1 2 643 7956 37 5 3 chr11 7691549 7692544 -114151312 - RLTR10-int LTR ERVK -1 1986 990 2 643 506 309 81 13 chr11 7692626 7692934 -114150922 - IAP-d-int LTR ERVK -5392 1150 822 2 643 309 23 0 0 chr11 7693023 7693066 -114150790 - RLTR10 LTR ERVK -347 43 1 2 643 374 286 25 0 chr11 7693067 7693186 -114150670 + Lx8 LINE L1 6818 6939 -534 2 643 4476 58 9 11 chr11 7693701 7694262 -114149594 - LTRIS2 LTR ERV1 0 564 5 2 643 1904 168 164 34 chr11 7695081 7695549 -114148307 + RLTR24 LTR ERV1 1 529 0 2 643 1552 269 80 12 chr11 7695553 7696042 -114147814 - RMER5 LTR ERV1 -8 526 5 2 643 200 345 9 37 chr11 7697093 7697188 -114146668 + L2c LINE L2 3230 3337 -50 2 643 210 71 0 0 chr11 7697330 7697358 -114146498 + (CACAA)n Simple_repeat Simple_repeat 2 29 0 2 643 343 248 9 18 chr11 7697393 7697504 -114146352 + CT-rich Low_complexity Low_complexity 2 111 0 2 643 186 293 51 39 chr11 7697645 7697723 -114146133 + L2 LINE L2 2517 2595 -824 2 643 1548 173 73 52 chr11 7698110 7698495 -114145361 + RMER10A LTR ERVL 50 442 0 2 643 1473 219 52 17 chr11 7699062 7699467 -114144389 + MTD LTR MaLR 1 419 0 2 643 351 343 216 19 chr11 7699745 7700060 -114143796 - L1MEc LINE L1 -5809 591 215 2 643 522 31 0 0 chr11 7700655 7700719 -114143137 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 643 1852 168 63 9 chr11 7701095 7701443 -114142413 - ORR1B1 LTR MaLR 0 394 28 2 643 1302 191 312 71 chr11 7701457 7701648 -114142208 + RLTR11A2 LTR ERVK 7 258 -269 2 643 800 92 0 8 chr11 7701648 7701768 -114142088 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 2 643 1302 212 105 90 chr11 7701768 7702047 -114141809 + RLTR11A2 LTR ERVK 259 526 -1 2 643 288 0 0 0 chr11 7702236 7702268 -114141588 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 643 1987 168 53 43 chr11 7702746 7703183 -114140673 + BGLII_B LTR ERVK 1 441 0 2 643 230 103 0 49 chr11 7704140 7704181 -114139675 - RLTR31_Mur LTR ERVK 0 553 515 2 643 3596 166 15 13 chr11 7704178 7704796 -114139060 - RLTR17 LTR ERVK -73 619 1 2 643 685 225 148 9 chr11 7705088 7705285 -114138571 - MT2A LTR ERVL -160 333 100 2 643 579 236 0 16 chr11 7705289 7705414 -114138442 - MT2A LTR ERVL -405 128 6 2 643 601 222 23 16 chr11 7705507 7705635 -114138221 + MT2A LTR ERVL 1 129 -404 2 643 767 228 0 0 chr11 7706413 7706540 -114137316 + B1_Mur1 SINE Alu 2 128 -21 2 643 242 135 0 37 chr11 7706558 7706612 -114137244 + GA-rich Low_complexity Low_complexity 2 53 0 2 643 298 94 0 70 chr11 7708042 7708099 -114135757 + 4.5SRNA scRNA scRNA 34 86 -8 2 643 562 12 250 0 chr11 7708052 7708136 -114135720 + B1_Mm SINE Alu 43 147 0 2 643 245 96 0 55 chr11 7708139 7708194 -114135662 + A-rich Low_complexity Low_complexity 1 52 0 2 643 289 315 32 21 chr11 7708202 7708288 -114135568 + B3A SINE B2 59 145 -53 2 643 675 99 0 0 chr11 7708288 7708389 -114135467 + (CAAAG)n Simple_repeat Simple_repeat 3 103 0 2 643 346 289 123 19 chr11 7708748 7708910 -114134946 + MER5A DNA MER1_type 1 179 -10 2 643 303 294 261 31 chr11 7709347 7709477 -114134379 + B3A SINE B2 1 160 -38 2 643 264 59 0 0 chr11 7709493 7709527 -114134329 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 643 325 259 119 101 chr11 7710963 7711122 -114132734 - MLT1C LTR MaLR -305 162 1 2 643 1438 34 78 0 chr11 7711416 7711576 -114132280 + B2_Mm1t SINE B2 1 160 -33 2 643 387 0 0 0 chr11 7711576 7711619 -114132237 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 643 1438 34 78 0 chr11 7711619 7711637 -114132219 + B2_Mm1t SINE B2 161 191 -2 2 643 1205 173 114 165 chr11 7712292 7712686 -114131170 - ORR1D1 LTR MaLR 0 374 1 2 643 338 402 60 46 chr11 7713013 7713383 -114130473 + MLT1I LTR MaLR 35 409 -2 2 643 217 326 43 43 chr11 7714875 7715013 -114128843 - MIR SINE MIR -47 215 78 2 643 230 320 128 7 chr11 7715292 7715440 -114128416 - MER5A DNA MER1_type -21 168 3 2 643 308 286 30 45 chr11 7715978 7716110 -114127746 + L2c LINE L2 3254 3383 -4 2 643 223 115 98 0 chr11 7717400 7717461 -114126395 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 643 1557 268 62 18 chr11 7717467 7717979 -114125877 - Lx8 LINE L1 -35 7438 6904 3 643 180 0 0 0 chr11 7718008 7718028 -114125828 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 643 414 0 0 0 chr11 7718028 7718073 -114125783 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 643 22 35 0 0 chr11 7718509 7718538 -114125318 + AT_rich Low_complexity Low_complexity 1 29 0 3 643 682 232 14 7 chr11 7718575 7718718 -114125138 - B1_Mur1 SINE Alu -1 148 5 3 643 435 342 70 79 chr11 7718879 7719234 -114124622 + ORR1E LTR MaLR 8 359 0 3 643 208 221 20 75 chr11 7719284 7719431 -114124425 + (CATATA)n Simple_repeat Simple_repeat 6 144 0 3 643 3054 171 29 49 chr11 7719690 7720319 -114123537 - RLTR18 LTR ERVK 0 616 1 3 643 222 62 0 0 chr11 7721556 7721588 -114122268 + (TTG)n Simple_repeat Simple_repeat 3 34 0 3 643 9631 90 2 25 chr11 7721614 7723766 -114120090 - L1_Mus2 LINE L1 -1 6565 4475 3 643 3363 94 55 0 chr11 7723764 7724254 -114119602 + L1_Mus2 LINE L1 3939 4455 -1428 3 643 255 362 44 50 chr11 7724633 7724793 -114119063 - MIRb SINE MIR -63 205 47 3 643 228 137 78 0 chr11 7724990 7725041 -114118815 + MIRc SINE MIR 214 268 0 3 643 426 226 27 45 chr11 7726794 7726905 -114116951 + MER121 Unknown Unknown 132 240 -172 3 643 405 0 0 0 chr11 7726918 7726963 -114116893 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 643 258 343 37 0 chr11 7728524 7728632 -114115224 - L1MC LINE L1 -2238 5644 5533 3 643 220 317 12 0 chr11 7728712 7728794 -114115062 + (CATA)n Simple_repeat Simple_repeat 3 85 0 3 643 1538 207 55 3 chr11 7728860 7729190 -114114666 - RLTR14 LTR ERV1 -35 347 1 3 643 1134 240 198 3 chr11 7729499 7729833 -114114023 - MTD LTR MaLR -13 406 8 3 643 1463 187 65 3 chr11 7730758 7731096 -114112760 - Lx9 LINE L1 -1 7643 7285 3 643 949 264 19 5 chr11 7731479 7731692 -114112164 + B3 SINE B2 1 216 0 3 643 466 276 138 64 chr11 7732694 7732992 -114110864 + LTR65 LTR ERV1 277 596 -73 3 80 713 295 129 16 chr11 7733197 7733562 -114110294 - MLT1A1 LTR MaLR -2 406 1 3 644 458 113 61 34 chr11 7734138 7734285 -114109571 + C-rich Low_complexity Low_complexity 1 151 0 3 644 1237 62 7 0 chr11 7734779 7734925 -114108931 + B1_Mus1 SINE Alu 2 148 0 3 644 26 30 0 0 chr11 7735405 7735438 -114108418 + AT_rich Low_complexity Low_complexity 1 33 0 3 644 468 311 97 42 chr11 7736000 7736382 -114107474 - L1MEe LINE L1 -3963 891 489 3 644 839 179 54 32 chr11 7736433 7736618 -114107238 + Lx9 LINE L1 7084 7272 -372 3 644 1752 182 23 96 chr11 7736618 7737013 -114106843 - ORR1B1 LTR MaLR 0 394 29 3 644 1110 187 165 35 chr11 7737044 7737360 -114106496 + Lx9 LINE L1 7284 7640 -4 3 644 287 216 38 63 chr11 7737557 7737636 -114106220 - ID4 SINE ID 0 83 7 3 644 381 65 0 46 chr11 7739674 7739739 -114104117 - L1Md_F2 LINE L1 -2 6580 6519 3 644 322 67 17 0 chr11 7739739 7739801 -114104055 + L1Md_F2 LINE L1 6470 6540 -42 3 644 351 63 31 16 chr11 7739871 7739935 -114103921 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 644 639 122 0 0 chr11 7740719 7740809 -114103047 + L1_Mur2 LINE L1 5540 5629 -248 3 644 2792 63 33 39 chr11 7740810 7741171 -114102685 + RLTR10D LTR ERVK 1 359 0 3 644 2596 56 80 0 chr11 7741171 7741510 -114102346 + IAP-d-int LTR ERVK 1 366 -6176 3 644 3429 50 25 0 chr11 7741510 7741911 -114101945 - RLTR10A LTR ERVK 0 411 1 3 644 5268 144 64 52 chr11 7741911 7743419 -114100437 - RLTR10-int LTR ERVK -1 1986 1283 3 644 366 140 0 0 chr11 7743419 7743476 -114100380 - RLTR10-int LTR ERVK -6039 503 447 3 644 483 291 37 32 chr11 7743493 7743749 -114100107 - IAP-d-int LTR ERVK -5479 1063 847 3 644 4547 97 24 60 chr11 7743912 7744627 -114099229 - RLTR10-int LTR ERVK -995 992 304 3 644 3438 42 28 0 chr11 7744629 7745029 -114098827 - RLTR10A LTR ERVK 0 411 1 3 644 49086 66 9 12 chr11 7745029 7751229 -114092627 + IAP-d-int LTR ERVK 361 6542 0 3 644 2803 70 43 14 chr11 7751229 7751578 -114092278 + RLTR10D LTR ERVK 1 359 0 3 644 7020 104 12 6 chr11 7751578 7752567 -114091289 + L1_Mus4 LINE L1 5631 6625 -11 3 644 468 344 80 19 chr11 7753549 7753860 -114089996 - MLT2C1 LTR ERVL -65 332 3 3 644 1894 153 53 53 chr11 7754296 7754670 -114089186 - ORR1B1 LTR MaLR -20 374 1 3 644 861 295 25 96 chr11 7756231 7756639 -114087217 + MTE2a LTR MaLR 1 379 0 3 644 604 301 38 110 chr11 7756639 7757033 -114086823 + MTE2a-int LTR MaLR 2 342 -916 3 644 378 0 0 0 chr11 7757873 7757915 -114085941 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 644 3663 30 2 0 chr11 7758773 7759168 -114084688 - MTA_Mm LTR MaLR 0 396 1 3 644 29 28 0 0 chr11 7760354 7760390 -114083466 + AT_rich Low_complexity Low_complexity 1 36 0 3 644 9195 2 0 2 chr11 7760610 7761910 -114081946 - L1Md_A LINE L1 -1 6581 5287 3 644 351 0 0 0 chr11 7762037 7762076 -114081780 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 644 477 0 0 0 chr11 7762076 7762128 -114081728 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 644 545 318 153 19 chr11 7763137 7763479 -114080377 - MER74A LTR ERVL -128 494 90 3 644 198 71 0 0 chr11 7764799 7764827 -114079029 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 644 1931 149 18 53 chr11 7765049 7765389 -114078467 - ORR1A4 LTR MaLR 0 329 2 3 644 1113 136 127 61 chr11 7765899 7766111 -114077745 - URR1A DNA MER1_type 0 226 1 3 644 1296 75 55 5 chr11 7766603 7766804 -114077052 - MusHAL1 LINE L1 -2157 555 345 3 644 415 202 51 0 chr11 7766805 7766884 -114076972 - ERVL-B4-int LTR ERVL -3287 2470 2388 3 644 552 271 13 7 chr11 7766876 7767028 -114076828 - ERVL-B4-int LTR ERVL -3743 1971 1819 3 644 592 303 90 67 chr11 7767050 7767226 -114076630 - ERVL-B4-int LTR ERVL -4355 1359 1176 3 644 954 71 0 0 chr11 7767226 7767353 -114076503 + (GGAA)n Simple_repeat Simple_repeat 2 128 0 3 644 592 303 90 67 chr11 7767353 7767622 -114076234 - ERVL-B4-int LTR ERVL -4539 1175 904 3 644 204 67 0 118 chr11 7767852 7767903 -114075953 + A-rich Low_complexity Low_complexity 2 46 0 3 644 718 261 31 20 chr11 7768094 7768348 -114075508 - ERVL-B4-int LTR ERVL -5249 465 209 3 644 289 239 101 17 chr11 7768378 7768497 -114075359 - ERVL-B4-int LTR ERVL -5567 147 19 3 644 321 109 0 0 chr11 7768731 7768786 -114075070 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 644 1323 258 93 26 chr11 7768864 7769485 -114074371 - L1_Rod LINE L1 -31 5816 5174 3 644 813 263 177 11 chr11 7769497 7769762 -114074094 + ORR1E LTR MaLR 49 357 -2 3 644 676 0 0 0 chr11 7769779 7769851 -114074005 + tRNA-Asp-GAY tRNA tRNA 1 72 -3 3 644 38804 18 1 0 chr11 7769866 7775062 -114068794 + L1Md_A LINE L1 439 5592 -291 3 644 9100 19 0 0 chr11 7775062 7776038 -114067818 + L1Md_A LINE L1 5607 6582 0 3 644 549 0 0 0 chr11 7776093 7776154 -114067702 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 3 644 1333 306 142 65 chr11 7776155 7776876 -114066980 - L1M2 LINE L1 -754 5123 4436 3 644 501 17 0 0 chr11 7776876 7776934 -114066922 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 644 315 0 0 0 chr11 7776934 7776968 -114066888 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 644 1333 303 153 64 chr11 7776968 7777638 -114066218 - L1M2 LINE L1 -1696 4447 3647 3 644 281 369 8 23 chr11 7777661 7777676 -114066180 - MT2A LTR ERVL -400 133 3 3 644 530 271 8 0 chr11 7777676 7777794 -114066062 - MTE2b LTR MaLR -258 121 3 3 644 1721 292 157 27 chr11 7777804 7779596 -114064260 + L1M2 LINE L1 3704 5791 -500 3 644 306 0 0 0 chr11 7779623 7779657 -114064199 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 644 1889 92 74 64 chr11 7779661 7779973 -114063883 - ORR1A2 LTR MaLR -8 319 5 3 644 420 97 0 0 chr11 7779974 7780036 -114063820 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 644 263 96 0 47 chr11 7780070 7780121 -114063735 + L1M2 LINE L1 5851 5898 -402 3 644 929 146 21 7 chr11 7780336 7780481 -114063375 - B1_Mus1 SINE Alu 0 148 2 3 644 6447 118 18 39 chr11 7781740 7782718 -114061138 - RMER17B LTR ERVK 0 958 1 3 644 1680 150 95 16 chr11 7782994 7783299 -114060557 - ORR1A4 LTR MaLR 0 329 1 3 644 458 267 65 65 chr11 7783829 7784045 -114059811 - L1MA6 LINE L1 -8 6292 6077 3 644 255 89 29 43 chr11 7784183 7784253 -114059603 + A-rich Low_complexity Low_complexity 1 69 0 3 644 288 277 0 0 chr11 7785057 7785122 -114058734 - ID4_ SINE ID -6 77 13 3 644 1217 39 7 0 chr11 7785573 7785728 -114058128 + (TCTCCC)n Simple_repeat Simple_repeat 1 156 0 3 644 2387 242 75 86 chr11 7786315 7787297 -114056559 - RLTR25B LTR ERVK 0 1028 57 3 644 3361 128 39 0 chr11 7787302 7787810 -114056046 - Lx3A LINE L1 -213 6768 6241 3 644 3149 70 23 3 chr11 7788614 7789002 -114054854 - MTA_Mm LTR MaLR 0 396 1 3 644 506 198 42 0 chr11 7789467 7789563 -114054293 + MTE2b LTR MaLR 1 100 -279 3 644 489 62 0 0 chr11 7789712 7789777 -114054079 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 644 975 101 12 6 chr11 7789876 7790036 -114053820 + (GGA)n Simple_repeat Simple_repeat 3 163 0 3 644 217 184 20 20 chr11 7790169 7790219 -114053637 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 644 635 354 70 8 chr11 7790606 7790862 -114052994 + B4A SINE B4 3 274 -18 3 644 232 294 105 12 chr11 7790844 7790930 -114052926 - ORR1D2 LTR MaLR -276 94 1 3 644 23 33 0 0 chr11 7792053 7792083 -114051773 + AT_rich Low_complexity Low_complexity 1 30 0 3 644 268 345 9 0 chr11 7792765 7792878 -114050978 - Charlie13b DNA Charlie -214 298 185 3 644 1258 137 16 0 chr11 7793014 7793197 -114050659 + B2_Mm2 SINE B2 2 187 -8 3 644 1837 181 0 63 chr11 7794297 7794645 -114049211 - ORR1A3 LTR MaLR 0 326 1 3 644 8353 161 51 16 chr11 7794645 7796225 -114047631 - ORR1A3-int LTR MaLR 0 1963 328 3 644 1408 111 93 182 chr11 7796225 7796675 -114047181 - RMER17C LTR ERVK 0 410 1 3 644 1895 172 125 15 chr11 7796675 7797275 -114046581 - RMER17C-int LTR ERVK 0 3238 2573 3 644 542 105 152 0 chr11 7797286 7797391 -114046465 - RMER17C-int LTR ERVK -879 2359 2239 3 644 971 228 160 45 chr11 7797425 7797913 -114045943 - RMER17C-int LTR ERVK -1222 2016 1473 3 644 848 130 25 0 chr11 7798521 7798682 -114045174 + GA-rich Low_complexity Low_complexity 6 170 0 3 644 1568 205 164 43 chr11 7798996 7799527 -114044329 - RMER17C-int LTR ERVK -2642 596 2 3 644 638 196 70 57 chr11 7799607 7799834 -114044022 - RMER17C LTR ERVK -129 281 52 3 644 1650 241 76 64 chr11 7801002 7801516 -114042340 - RLTR11A LTR ERVK -8 520 1 3 644 373 263 184 38 chr11 7801518 7801676 -114042180 - B3A SINE B2 -16 182 2 3 644 374 53 18 0 chr11 7802118 7802175 -114041681 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 644 392 296 52 17 chr11 7802542 7802714 -114041142 - RLTR42-int LTR ERVK -1088 4434 4257 3 644 7500 88 36 0 chr11 7802814 7803889 -114039967 - L1_Mus3 LINE L1 -3 6635 5522 3 644 465 19 0 0 chr11 7803889 7803943 -114039913 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 644 1122 199 135 43 chr11 7804428 7804732 -114039124 + IAPEY3_LTR LTR ERVK 1 332 0 3 644 1463 128 19 5 chr11 7804732 7805073 -114038783 + MMERVK10C-int LTR ERVK 1 426 -7155 3 644 837 106 0 0 chr11 7805176 7805299 -114038557 + MMERVK10C-int LTR ERVK 713 835 -6746 3 644 739 198 136 0 chr11 7805311 7805473 -114038383 + IAPEz-int LTR ERVK 320 503 -4903 3 644 653 232 230 8 chr11 7805441 7805676 -114038180 + RLTR19-int LTR ERVK 376 662 -5475 4 644 266 211 58 0 chr11 7805671 7805723 -114038133 + RLTR19-int LTR ERVK 950 1004 -983 4 644 278 270 49 20 chr11 7805786 7805888 -114037968 + RLTR19-int LTR ERVK 1462 1566 -6015 4 644 366 158 0 0 chr11 7805905 7805962 -114037894 + IAPEz-int LTR ERVK 447 503 -6039 3 644 1398 129 107 0 chr11 7805962 7806187 -114037669 + IAPEz-int LTR ERVK 5007 5255 -1287 3 644 1718 105 65 32 chr11 7806187 7806511 -114037345 + IAPEY3-int LTR ERVK 6965 7338 -342 4 644 1402 189 59 12 chr11 7806534 7806871 -114036985 + IAPEz-int LTR ERVK 6129 6481 0 3 644 1178 208 128 36 chr11 7806871 7807175 -114036681 + IAPEY3_LTR LTR ERVK 1 332 0 3 644 2075 110 31 89 chr11 7807377 7807726 -114036130 - ORR1A4 LTR MaLR 0 329 1 4 644 700 132 349 12 chr11 7808193 7808362 -114035494 + URR1A DNA MER1_type 1 226 0 4 644 434 18 0 18 chr11 7808420 7808477 -114035379 + L1_Mus2 LINE L1 6510 6565 -1 4 644 8862 93 32 13 chr11 7809275 7810962 -114032894 + Lx3A LINE L1 5259 6981 0 4 644 180 0 0 0 chr11 7810984 7811004 -114032852 + (GGGGA)n Simple_repeat Simple_repeat 3 22 0 4 644 1065 96 0 0 chr11 7811005 7811183 -114032673 + (GAGAA)n Simple_repeat Simple_repeat 3 180 0 4 644 6904 58 24 3 chr11 7813365 7814229 -114029627 - L1_Mus2 LINE L1 0 6566 5685 4 644 450 0 0 0 chr11 7815167 7815217 -114028639 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 644 6028 173 84 4 chr11 7816652 7817779 -114026077 + Lx4A LINE L1 5842 7058 0 4 644 434 119 32 41 chr11 7817788 7817911 -114025945 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 4 644 186 133 0 0 chr11 7818637 7818667 -114025189 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 644 22 80 0 0 chr11 7819505 7819555 -114024301 + AT_rich Low_complexity Low_complexity 1 50 0 4 644 297 0 0 0 chr11 7820282 7820315 -114023541 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 644 398 267 175 31 chr11 7820420 7820745 -114023111 - L1M4 LINE L1 -1729 4417 4046 4 644 38839 31 1 1 chr11 7820758 7827610 -114016246 - L1Md_T LINE L1 0 6585 1 4 644 31 26 0 0 chr11 7828218 7828256 -114015600 + AT_rich Low_complexity Low_complexity 1 38 0 4 644 1165 311 54 43 chr11 7828721 7829276 -114014580 + MYSERV-int LTR ERVK 3774 4334 -2216 4 644 486 182 17 33 chr11 7829269 7829471 -114014385 + MYSERV16_I-int LTR ERVK 1169 1265 -1061 4 644 775 148 22 0 chr11 7829471 7829606 -114014250 + MYSERV16_I-int LTR ERVK 1754 1891 -435 4 644 1053 99 0 0 chr11 7830331 7830492 -114013364 + (TC)n Simple_repeat Simple_repeat 1 161 0 4 644 2812 46 0 0 chr11 7831657 7831980 -114011876 + L1Md_T LINE L1 6258 6580 -2 4 644 246 62 0 0 chr11 7834302 7834334 -114009522 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 644 807 240 101 15 chr11 7834703 7835041 -114008815 - L1MA9 LINE L1 -11 6301 5935 4 644 4089 112 114 22 chr11 7835050 7835742 -114008114 - RMER6A LTR ERVK 0 756 1 4 644 812 289 161 31 chr11 7836042 7836535 -114007321 + Lx9 LINE L1 6931 7502 -142 4 644 297 0 0 0 chr11 7836535 7836568 -114007288 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 644 812 289 161 31 chr11 7836568 7836691 -114007165 + Lx9 LINE L1 7503 7627 -17 4 644 33 0 0 0 chr11 7836691 7836724 -114007132 + AT_rich Low_complexity Low_complexity 1 33 0 4 644 516 232 68 49 chr11 7837783 7837897 -114005959 + MT2A LTR ERVL 137 252 -281 4 644 3777 70 4 16 chr11 7837897 7838403 -114005453 + L1_Mus2 LINE L1 6063 6562 -4 4 644 516 220 200 53 chr11 7838403 7838566 -114005290 + MT2A LTR ERVL 253 489 -44 4 644 649 129 17 0 chr11 7838574 7838690 -114005166 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 644 201 158 26 0 chr11 7839720 7839758 -114004098 + CT-rich Low_complexity Low_complexity 2 40 0 4 644 230 266 18 27 chr11 7841238 7841350 -114002506 - Lx9 LINE L1 -5 7639 7529 4 644 411 21 0 0 chr11 7841354 7841402 -114002454 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 644 1157 245 22 49 chr11 7841424 7841793 -114002063 - Lx9 LINE L1 -272 7372 7014 4 644 22 0 0 0 chr11 7841842 7841864 -114001992 + AT_rich Low_complexity Low_complexity 1 22 0 4 644 2194 196 36 21 chr11 7843251 7843724 -114000132 - RLTR20B3 LTR ERVK -14 563 84 4 644 2969 53 3 5 chr11 7847357 7847736 -113996120 - L1Md_F2 LINE L1 -12 6570 6193 4 644 348 327 20 13 chr11 7849765 7849917 -113993939 + CT-rich Low_complexity Low_complexity 1 153 0 4 644 207 175 0 0 chr11 7849966 7850023 -113993833 + CT-rich Low_complexity Low_complexity 2 58 0 4 644 359 275 46 0 chr11 7850035 7850144 -113993712 + MER89 LTR ERV1 1 114 -445 4 644 609 267 194 0 chr11 7850223 7850403 -113993453 + B3 SINE B2 2 216 0 4 644 548 219 38 0 chr11 7850414 7850519 -113993337 + B1_Mur3 SINE Alu 1 109 -40 4 644 1212 48 0 0 chr11 7851715 7851862 -113991994 + B1_Mus2 SINE Alu 1 147 0 4 644 850 218 128 54 chr11 7851905 7852201 -113991655 - MTD LTR MaLR -14 405 88 4 644 289 300 0 12 chr11 7852187 7852268 -113991588 + RLTR17 LTR ERVK 613 692 0 4 644 395 282 52 11 chr11 7854159 7854276 -113989580 + PB1 SINE Alu 1 126 -1 4 644 448 287 182 29 chr11 7854281 7854802 -113989054 - L1MC3 LINE L1 -1 7784 7184 4 644 288 130 0 0 chr11 7854867 7854913 -113988943 + (CTG)n Simple_repeat Simple_repeat 2 47 0 4 644 1079 56 0 7 chr11 7854913 7855056 -113988800 + (TTC)n Simple_repeat Simple_repeat 1 143 0 4 644 3594 39 0 2 chr11 7855092 7855551 -113988305 + L1Md_F2 LINE L1 5129 5586 -297 4 644 7940 49 2 11 chr11 7855552 7856556 -113987300 + L1Md_F2 LINE L1 5588 6582 0 4 644 294 155 148 45 chr11 7856735 7856823 -113987033 - URR1B DNA MER1_type -16 209 113 4 644 29110 73 10 5 chr11 7856823 7861704 -113982152 - L1Md_F2 LINE L1 -23 6559 1649 4 644 1933 119 9 51 chr11 7861704 7862040 -113981816 + RLTRETN_Mm LTR ERVK 1 322 0 4 80 22203 62 3 31 chr11 7862041 7865271 -113978585 + MMETn-int LTR ERVK 2 3141 -1703 4 645 999 155 62 22 chr11 7865306 7865455 -113978401 + ETnERV-int LTR ERVK 2038 2190 -1124 4 645 267 31 0 0 chr11 7865455 7865487 -113978369 + (C)n Simple_repeat Simple_repeat 1 32 0 4 645 999 155 62 22 chr11 7865487 7865561 -113978295 + ETnERV-int LTR ERVK 2191 2269 -1045 4 645 1323 51 1 1 chr11 7865562 7865739 -113978117 + L1Md_T LINE L1 5378 5586 -297 4 645 8389 37 0 0 chr11 7865739 7866734 -113977122 + L1Md_T LINE L1 5587 6581 -1 4 645 6848 110 10 21 chr11 7866735 7867869 -113975987 + MMETn-int LTR ERVK 3724 4844 0 4 645 1953 113 12 51 chr11 7867869 7868204 -113975652 + RLTRETN_Mm LTR ERVK 1 322 0 4 645 4960 106 21 1 chr11 7868205 7869427 -113974429 - L1Md_F LINE L1 -4230 1653 375 4 645 426 250 70 31 chr11 7869427 7869555 -113974301 - URR1B DNA MER1_type -86 139 7 4 645 388 281 50 29 chr11 7869650 7869789 -113974067 - ORR1E LTR MaLR -212 147 6 4 645 487 285 179 42 chr11 7869804 7870324 -113973532 - L1MC3 LINE L1 -748 7037 6447 4 645 21 0 0 0 chr11 7870459 7870480 -113973376 + AT_rich Low_complexity Low_complexity 1 21 0 4 645 468 51 0 0 chr11 7870480 7870539 -113973317 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 645 638 287 15 0 chr11 7870544 7870680 -113973176 - RSINE1 SINE B4 -25 140 3 4 645 396 201 41 1 chr11 7870798 7870920 -113972936 - L1MC LINE L1 -2632 3514 3387 4 645 501 282 97 30 chr11 7871115 7871547 -113972309 - L1MC LINE L1 -2979 3167 2707 4 645 26 74 0 0 chr11 7871722 7871776 -113972080 + AT_rich Low_complexity Low_complexity 1 54 0 4 645 213 39 0 0 chr11 7871778 7871804 -113972052 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 645 363 203 12 30 chr11 7872050 7872151 -113971705 - ORR1A4 LTR MaLR -17 310 217 4 645 2135 202 122 26 chr11 7872273 7872806 -113971050 - RLTR31A_Mm LTR ERVK 0 584 1 4 645 1742 180 22 12 chr11 7873015 7873336 -113970520 - ORR1A4 LTR MaLR 0 329 6 4 645 2014 186 16 5 chr11 7873360 7873727 -113970129 - Lx4A LINE L1 0 7058 6688 4 645 1624 167 48 13 chr11 7873740 7874049 -113969807 - Lx4A LINE L1 -556 6502 6183 4 645 6085 94 60 0 chr11 7874051 7875033 -113968823 - L1_Mur2 LINE L1 -515 5362 4322 4 645 267 93 0 0 chr11 7875122 7875165 -113968691 + (A)n Simple_repeat Simple_repeat 1 43 0 4 645 21 0 0 0 chr11 7875740 7875761 -113968095 + AT_rich Low_complexity Low_complexity 1 21 0 4 645 564 353 18 37 chr11 7875899 7876281 -113967575 + L1ME3 LINE L1 5543 5917 -245 4 645 404 343 98 42 chr11 7876756 7877091 -113966765 + MER70A LTR ERVL 97 450 -22 4 645 191 132 0 36 chr11 7877493 7877548 -113966308 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 4 645 1166 48 7 7 chr11 7877548 7877696 -113966160 - B1_Mus1 SINE Alu 0 148 1 4 645 21 36 0 0 chr11 7877698 7877726 -113966130 + AT_rich Low_complexity Low_complexity 1 28 0 4 645 334 220 111 20 chr11 7877956 7878109 -113965747 - L1MA5 LINE L1 -317 5983 5817 4 645 2425 83 28 17 chr11 7878113 7878467 -113965389 - L1Md_F2 LINE L1 0 6582 6225 4 645 2967 64 5 0 chr11 7878467 7878859 -113964997 + L1Md_F2 LINE L1 5837 6230 -352 4 645 225 300 118 34 chr11 7878861 7879099 -113964757 - L1MA5 LINE L1 -475 5825 5568 4 645 226 373 58 39 chr11 7879173 7879195 -113964661 - RSINE1 SINE B4 -2 163 5 4 645 595 248 0 67 chr11 7879195 7879329 -113964527 - B3A SINE B2 -70 128 4 4 645 266 296 35 44 chr11 7879329 7879418 -113964438 + RMER12 LTR ERVK 763 850 -472 4 645 860 298 5 5 chr11 7879441 7879630 -113964226 - B3A SINE B2 -9 189 1 4 645 2050 96 28 40 chr11 7879674 7880052 -113963804 + RLTR10A LTR ERVK 1 359 0 4 645 243 175 111 0 chr11 7880229 7880292 -113963564 - Lx7 LINE L1 -420 7276 7207 4 645 428 219 13 9 chr11 7880584 7880819 -113963037 + (TG)n Simple_repeat Simple_repeat 1 236 0 4 645 5279 160 102 20 chr11 7882803 7883822 -113960034 + RLTR25A LTR ERVK 1 1103 0 4 645 22 0 0 0 chr11 7884753 7884775 -113959081 + AT_rich Low_complexity Low_complexity 1 22 0 4 645 21 57 0 0 chr11 7884944 7884979 -113958877 + AT_rich Low_complexity Low_complexity 1 35 0 4 645 1404 89 0 5 chr11 7885279 7885471 -113958385 + B2_Mm2 SINE B2 1 191 -4 4 645 195 42 0 0 chr11 7885620 7885644 -113958212 + (A)n Simple_repeat Simple_repeat 1 24 0 4 645 3149 72 2 27 chr11 7886788 7887231 -113956625 + L1Md_F2 LINE L1 6151 6582 0 4 645 502 340 115 11 chr11 7887288 7887695 -113956161 + L1MC4 LINE L1 6605 7087 -955 4 645 319 298 183 27 chr11 7887758 7888020 -113955836 + L1MC4 LINE L1 7285 7587 -455 4 645 280 253 84 73 chr11 7888352 7888531 -113955325 + L1ME2z LINE L1 5874 6055 -389 4 645 23 0 0 0 chr11 7888616 7888639 -113955217 + AT_rich Low_complexity Low_complexity 1 23 0 4 645 1115 199 24 9 chr11 7888730 7888943 -113954913 + B3 SINE B2 1 216 0 4 645 432 316 72 60 chr11 7889017 7889489 -113954367 + L1M5 LINE L1 2372 2849 -3297 4 645 210 224 34 17 chr11 7889692 7889751 -113954105 + L3 LINE CR1 2797 2856 -1633 4 645 327 25 0 0 chr11 7890147 7890187 -113953669 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 4 645 1058 91 0 77 chr11 7891141 7891296 -113952560 + B1_Mus1 SINE Alu 1 143 -5 4 645 758 192 6 0 chr11 7891298 7891459 -113952397 + GA-rich Low_complexity Low_complexity 1 162 0 5 645 965 96 0 14 chr11 7891461 7891609 -113952247 + (GGAAA)n Simple_repeat Simple_repeat 4 149 0 5 645 336 293 68 36 chr11 7891764 7892012 -113951844 - L1M5 LINE L1 -557 5607 5352 5 645 4713 226 28 39 chr11 7892221 7892818 -113951038 - RMER1B Other Other -4 1062 488 5 645 3044 58 61 3 chr11 7892818 7893196 -113950660 - MTB LTR MaLR 0 400 1 5 645 4713 226 28 39 chr11 7893196 7893672 -113950184 - RMER1B Other Other -579 487 1 5 645 372 324 0 29 chr11 7894387 7894492 -113949364 - PB1D10 SINE Alu -5 112 11 5 645 242 298 220 34 chr11 7894492 7894503 -113949353 - ID_B1 SINE B4 -3 219 82 5 645 524 264 206 11 chr11 7895159 7895339 -113948517 + B3 SINE B2 2 216 0 5 645 280 282 68 8 chr11 7895645 7895777 -113948079 + L1MA8 LINE L1 6019 6159 -153 5 645 495 122 0 0 chr11 7896252 7896342 -113947514 + (TC)n Simple_repeat Simple_repeat 2 91 0 5 645 387 56 0 0 chr11 7896342 7896396 -113947460 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 645 395 293 30 13 chr11 7896412 7896563 -113947293 + Lx7 LINE L1 5297 5485 -679 5 645 641 302 99 31 chr11 7896570 7896864 -113946992 + Lx7 LINE L1 5593 5906 -1790 5 645 227 204 0 0 chr11 7897723 7897767 -113946089 + (TATG)n Simple_repeat Simple_repeat 1 44 0 5 645 737 293 67 59 chr11 7897826 7898287 -113945569 - L1MC3 LINE L1 -593 7192 6728 5 645 286 301 0 105 chr11 7898452 7898604 -113945252 - L1MC3 LINE L1 -1502 6283 6148 5 645 463 331 84 28 chr11 7898673 7899075 -113944781 - L1MC3 LINE L1 -357 5987 5561 5 645 311 303 146 35 chr11 7899267 7899527 -113944329 - L1MC3 LINE L1 -1288 4858 4570 5 645 58 60 0 0 chr11 7900475 7900575 -113943281 + AT_rich Low_complexity Low_complexity 1 100 0 5 645 766 168 16 0 chr11 7900577 7900702 -113943154 - B1_Mur4 SINE Alu -8 142 16 5 645 231 286 15 31 chr11 7901200 7901265 -113942591 - MER74B LTR ERVL -449 173 110 5 645 1070 101 19 0 chr11 7901838 7901997 -113941859 - L1_Mus3 LINE L1 -6 6632 6471 5 645 183 80 0 0 chr11 7903236 7903261 -113940595 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5 645 22 0 0 0 chr11 7903435 7903457 -113940399 + AT_rich Low_complexity Low_complexity 1 22 0 5 645 267 274 12 12 chr11 7904074 7904159 -113939697 + CT-rich Low_complexity Low_complexity 2 86 0 5 645 546 171 34 59 chr11 7905955 7906073 -113937783 + RMER13B LTR ERVK 794 908 0 5 645 411 191 25 13 chr11 7906655 7906814 -113937042 + (TA)n Simple_repeat Simple_repeat 2 162 0 5 645 209 130 43 0 chr11 7906920 7906966 -113936890 + (CATA)n Simple_repeat Simple_repeat 4 51 0 5 645 777 260 34 43 chr11 7907061 7907270 -113936586 + ID_B1 SINE B4 4 210 -14 5 645 252 59 0 0 chr11 7908390 7908424 -113935432 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 645 250 267 55 11 chr11 7908432 7908523 -113935333 + L1MD LINE L1 2199 2293 -3853 5 645 614 204 330 7 chr11 7908742 7909018 -113934838 - ORR1C1 LTR MaLR -9 369 5 5 645 288 0 0 0 chr11 7909379 7909411 -113934445 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 645 455 282 93 69 chr11 7909571 7909751 -113934105 + L1MC3 LINE L1 4963 5163 -983 5 645 289 363 0 9 chr11 7909751 7909865 -113933991 + PB1D10 SINE Alu 4 116 -1 5 645 518 301 70 30 chr11 7909865 7910444 -113933412 + L1MC3 LINE L1 5164 5763 -2022 5 645 408 311 108 19 chr11 7910550 7910809 -113933047 + L1MC3 LINE L1 5786 6067 -1718 5 645 316 353 139 42 chr11 7911095 7911542 -113932314 + MER21B LTR ERV1 210 699 -164 5 645 837 284 136 10 chr11 7911575 7911973 -113931883 + L1MC3 LINE L1 7317 7764 -21 5 645 510 223 9 0 chr11 7911979 7912091 -113931765 + L1MD LINE L1 5197 5309 -837 5 645 2965 64 143 139 chr11 7912127 7912637 -113931219 + RLTR1B LTR ERV1 1 512 0 5 645 1717 39 0 0 chr11 7913217 7913423 -113930433 + ORR1A1 LTR MaLR 141 346 0 5 645 14737 58 4 8 chr11 7913423 7915222 -113928634 + ORR1A1-int LTR MaLR 1 1792 0 5 645 2273 65 14 0 chr11 7915222 7915515 -113928341 + ORR1A1 LTR MaLR 1 297 -49 5 645 459 0 0 0 chr11 7915995 7916046 -113927810 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 645 324 119 0 0 chr11 7916046 7916104 -113927752 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 645 269 279 58 14 chr11 7916139 7916277 -113927579 + L1MC4 LINE L1 6933 7076 -966 5 645 195 246 0 0 chr11 7916911 7916968 -113926888 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 645 614 261 251 66 chr11 7916978 7917285 -113926571 + MTEb LTR MaLR 14 377 -2 5 645 468 282 144 36 chr11 7917432 7917627 -113926229 + B3 SINE B2 1 216 0 5 645 372 264 76 15 chr11 7917650 7917781 -113926075 - L1MA4 LINE L1 -378 5922 5784 5 645 703 314 75 15 chr11 7918243 7918508 -113925348 + B4A SINE B4 8 288 -4 5 645 317 24 24 0 chr11 7918528 7918570 -113925286 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 645 651 196 0 0 chr11 7920400 7920573 -113923283 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 5 645 267 31 0 0 chr11 7921441 7921473 -113922383 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 645 2454 163 39 12 chr11 7922947 7923357 -113920499 - MTC LTR MaLR 0 421 1 5 645 1283 298 118 27 chr11 7923672 7924644 -113919212 - L1MB3 LINE L1 -33 6150 5087 5 645 3044 56 0 0 chr11 7924650 7925027 -113918829 - L1_Mm LINE L1 -1600 4283 3907 5 645 7048 68 8 5 chr11 7925027 7925893 -113917963 + L1Md_F2 LINE L1 5714 6582 0 5 645 426 309 54 0 chr11 7925913 7926081 -113917775 - L1MB3 LINE L1 -1058 5082 4906 5 645 334 260 140 0 chr11 7926986 7927086 -113916770 - PB1D10 SINE Alu -1 116 3 5 645 1106 280 155 38 chr11 7927298 7928324 -113915532 - ERVL-B4-int LTR ERVL -164 5593 4436 5 645 1133 288 56 6 chr11 7928343 7928665 -113915191 - ERVL-B4-int LTR ERVL -1367 4347 4010 5 645 775 250 49 117 chr11 7930275 7930660 -113913196 + RMER17C LTR ERVK 1 359 -51 5 645 878 223 105 67 chr11 7930669 7931058 -113912798 - RMER10A LTR ERVL -10 432 29 5 645 332 358 75 34 chr11 7931353 7931619 -113912237 - MLT1A LTR MaLR -17 357 81 5 645 241 286 14 0 chr11 7932311 7932381 -113911475 - L1MB1 LINE L1 -1 6167 6097 5 645 378 309 88 28 chr11 7932485 7932735 -113911121 - L1MB1 LINE L1 -492 5676 5412 5 645 375 233 160 50 chr11 7932737 7932918 -113910938 + L1M3 LINE L1 4571 4771 -1369 5 645 183 124 59 49 chr11 7932926 7933028 -113910828 + CT-rich Low_complexity Low_complexity 2 104 0 5 645 596 315 62 34 chr11 7933052 7933364 -113910492 + L1M3 LINE L1 4795 5115 -1025 5 645 1180 76 14 0 chr11 7933364 7933509 -113910347 + B1_Mus2 SINE Alu 1 147 0 5 645 596 301 122 1316 chr11 7933509 7933582 -113910274 + L1M3 LINE L1 5116 5218 -925 5 645 262 299 11 0 chr11 7933651 7933738 -113910118 - L1MB1 LINE L1 -1362 4778 4691 5 645 3191 94 43 32 chr11 7933739 7934209 -113909647 - IAPLTR2_Mm LTR ERVK 0 475 1 5 645 15029 42 3 3 chr11 7934211 7935983 -113907873 - IAPEz-int LTR ERVK -2 6479 4708 5 645 1890 98 0 0 chr11 7936010 7936256 -113907600 - IAPEz-int LTR ERVK -5183 2497 2252 5 645 950 59 0 0 chr11 7936257 7936376 -113907480 - IAPEz-int LTR ERVK -5004 1477 1359 5 645 3581 80 25 39 chr11 7936376 7937026 -113906830 - IAPEz-int LTR ERVK -5819 662 168 5 645 237 321 0 0 chr11 7937026 7937082 -113906774 - RLTR27 LTR ERVK -34 275 220 5 645 372 101 163 33 chr11 7937082 7937174 -113906682 - IAPEz-int LTR ERVK -6369 112 9 5 645 3195 90 40 44 chr11 7937175 7937652 -113906204 - IAPLTR2_Mm LTR ERVK 0 475 1 5 645 612 180 16 0 chr11 7937661 7937783 -113906073 - URR1B DNA MER1_type 0 225 102 5 645 555 314 58 58 chr11 7939909 7940268 -113903588 - ORR1E LTR MaLR 0 359 1 5 645 571 291 83 29 chr11 7940543 7940748 -113903108 + B3 SINE B2 1 216 0 5 645 441 36 0 0 chr11 7940782 7940837 -113903019 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 645 728 354 153 25 chr11 7940866 7942087 -113901769 + L1MDa LINE L1 147 1523 -5110 5 645 964 197 66 19 chr11 7942184 7942208 -113901648 + URR1B DNA MER1_type 2 25 -200 5 645 3433 45 25 0 chr11 7942208 7942609 -113901247 + RLTR10A LTR ERVK 1 411 0 5 645 964 197 66 19 chr11 7942609 7942796 -113901060 + URR1B DNA MER1_type 26 222 -3 5 645 473 291 29 29 chr11 7942883 7943088 -113900768 - L1MC LINE L1 -1274 4872 4668 5 645 25 0 0 0 chr11 7943232 7943257 -113900599 + AT_rich Low_complexity Low_complexity 1 25 0 5 645 589 272 35 175 chr11 7944917 7945345 -113898511 + RMER20B LTR ERVK 235 602 -25 5 645 180 0 0 0 chr11 7945468 7945488 -113898368 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 5 645 2208 78 52 7 chr11 7945655 7945963 -113897893 + RLTRETN_Mm LTR ERVK 1 322 0 5 645 369 377 33 5 chr11 7946245 7946429 -113897427 - MLT1D LTR MaLR -107 398 210 5 645 261 0 0 0 chr11 7947412 7947441 -113896415 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 645 794 140 20 27 chr11 7947741 7947888 -113895968 - L1Md_F2 LINE L1 -1 6581 6436 5 645 1600 120 82 20 chr11 7948131 7948436 -113895420 + IAPLTR4 LTR ERVK 1 324 -21 5 645 702 215 37 6 chr11 7948692 7948901 -113894955 - MTD LTR MaLR -14 405 162 5 645 2698 31 0 12 chr11 7948934 7949260 -113894596 + RLTRETN_Mm LTR ERVK 1 322 0 5 645 225 212 112 45 chr11 7949282 7949371 -113894485 - L1M4 LINE L1 -290 5888 5794 5 645 1368 253 9 113 chr11 7949410 7949575 -113894281 + MTD LTR MaLR 10 161 -258 5 645 1052 23 75 0 chr11 7949575 7949708 -113894148 + B1_Mm SINE Alu 5 147 0 5 645 1368 253 9 113 chr11 7949708 7949984 -113893872 + MTD LTR MaLR 162 405 -14 5 645 461 254 246 0 chr11 7950075 7950209 -113893647 - B3 SINE B2 -48 168 2 5 645 180 0 0 0 chr11 7950535 7950555 -113893301 + (TAGA)n Simple_repeat Simple_repeat 3 22 0 5 645 550 315 59 0 chr11 7950831 7951050 -113892806 - MLT2D LTR ERVL -182 232 1 5 645 207 0 0 0 chr11 7951198 7951221 -113892635 + (T)n Simple_repeat Simple_repeat 1 23 0 5 645 2270 288 96 96 chr11 7951993 7953144 -113890712 + Lx8 LINE L1 6320 7470 -3 5 645 535 272 109 77 chr11 7953238 7953707 -113890149 + L1MA8 LINE L1 5787 6270 -21 5 645 390 74 0 0 chr11 7954183 7954237 -113889619 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 645 498 270 36 0 chr11 7954243 7954380 -113889476 - B3A SINE B2 -56 142 1 5 645 21 0 0 0 chr11 7954810 7954831 -113889025 + AT_rich Low_complexity Low_complexity 1 21 0 5 645 33709 75 11 6 chr11 7954896 7960090 -113883766 + L1Md_F2 LINE L1 368 5586 -297 5 645 8489 37 1 1 chr11 7960090 7961084 -113882772 + L1Md_F2 LINE L1 5587 6580 -2 5 645 625 307 47 47 chr11 7962422 7962802 -113881054 + L1MA5A LINE L1 5521 5900 -397 5 645 254 317 79 0 chr11 7963679 7963780 -113880076 - RSINE1 SINE B4 -7 158 50 5 645 251 228 49 73 chr11 7963784 7963907 -113879949 - L1M4 LINE L1 -5540 1002 883 5 645 730 309 54 20 chr11 7964110 7964407 -113879449 + MLT1A0 LTR MaLR 21 327 -38 5 645 253 287 82 18 chr11 7965658 7965768 -113878088 - PB1D9 SINE Alu -1 119 3 5 645 1370 251 132 75 chr11 7965805 7966732 -113877124 - RMER17A2 LTR ERVK -9 899 11 5 645 295 243 29 0 chr11 7967007 7967077 -113876779 - MER21B LTR ERV1 -113 750 679 5 645 1380 299 180 16 chr11 7967445 7968221 -113875635 + RCHARR1 DNA MER1_type 26 928 -46 6 645 311 318 130 83 chr11 7968353 7968692 -113875164 + MER21B LTR ERV1 307 661 -202 6 645 322 290 43 7 chr11 7969007 7969146 -113874710 - LTR33A LTR ERVL -48 472 329 6 645 252 300 38 84 chr11 7970677 7970809 -113873047 + MIR SINE MIR 115 248 -20 6 645 1805 187 68 49 chr11 7970927 7971337 -113872519 + MTD LTR MaLR 1 418 -1 6 645 216 0 0 0 chr11 7971345 7971369 -113872487 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 645 375 60 0 0 chr11 7972078 7972128 -113871728 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 645 760 328 84 43 chr11 7973168 7973748 -113870108 + MLT1E2 LTR MaLR 13 616 -11 6 645 26 0 0 0 chr11 7974924 7974950 -113868906 + AT_rich Low_complexity Low_complexity 1 26 0 6 645 729 118 0 0 chr11 7974958 7975077 -113868779 + (TC)n Simple_repeat Simple_repeat 1 119 0 6 645 357 125 0 0 chr11 7975076 7975132 -113868724 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 645 537 294 27 14 chr11 7975132 7975280 -113868576 - RSINE1 SINE B4 -12 153 4 6 645 472 326 36 13 chr11 7975564 7975788 -113868068 + B4A SINE B4 50 278 -14 6 645 204 284 30 0 chr11 7975797 7975864 -113867992 + (CATA)n Simple_repeat Simple_repeat 2 70 0 6 645 584 289 20 40 chr11 7975884 7976136 -113867720 - Tigger5 DNA MER2_type -56 2350 2104 6 645 4443 12 2 12 chr11 7976481 7976979 -113866877 + MT2_Mm LTR ERVL 1 493 0 6 645 48414 15 6 0 chr11 7976979 7982305 -113861551 + MERVL-int LTR ERVL 1 5360 -125 6 645 362 167 46 35 chr11 7982305 7982392 -113861464 + ORR1A3-int LTR MaLR 553 640 -1323 6 645 321 0 0 0 chr11 7982392 7982430 -113861426 + MERVL-int LTR ERVL 5448 5485 0 6 645 4443 12 2 12 chr11 7982430 7982928 -113860928 + MT2_Mm LTR ERVL 1 493 0 6 645 22 0 0 0 chr11 7983543 7983565 -113860291 + AT_rich Low_complexity Low_complexity 1 22 0 6 645 1274 266 70 94 chr11 7984713 7985280 -113858576 + L1M4 LINE L1 3746 4296 -1850 6 645 180 77 0 0 chr11 7985280 7985306 -113858550 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 645 1274 266 70 94 chr11 7985306 7985494 -113858362 + L1M4 LINE L1 4297 4483 -1663 6 645 351 232 120 10 chr11 7985503 7985603 -113858253 + PB1D7 SINE Alu 3 113 -7 6 645 194 208 19 0 chr11 7985607 7985660 -113858196 + GA-rich Low_complexity Low_complexity 3 56 0 6 645 352 308 102 12 chr11 7985879 7986141 -113857715 + L1M4 LINE L1 5337 5633 -711 6 645 486 33 0 0 chr11 7986284 7986344 -113857512 + (GTTTG)n Simple_repeat Simple_repeat 2 61 0 6 645 205 152 43 21 chr11 7989134 7989181 -113854675 + L2 LINE L2 2814 2861 -558 6 645 241 324 135 20 chr11 7990121 7990269 -113853587 - L1MC3 LINE L1 -319 7466 7302 6 645 910 259 211 10 chr11 7990271 7990575 -113853281 - ORR1D2 LTR MaLR -5 365 1 6 645 314 294 120 70 chr11 7990617 7990917 -113852939 + L1MCa LINE L1 1494 1808 -4700 6 645 215 324 0 53 chr11 7991251 7991326 -113852530 - RSINE1 SINE B4 -87 78 8 6 645 345 244 91 55 chr11 7991370 7991609 -113852247 + L1MCa LINE L1 2202 2449 -3872 6 645 245 186 28 14 chr11 7991786 7991857 -113851999 + A-rich Low_complexity Low_complexity 5 76 0 6 645 270 0 0 0 chr11 7991858 7991888 -113851968 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 645 670 304 35 5 chr11 7991888 7992090 -113851766 - Lx7 LINE L1 -403 7293 7086 6 645 321 247 0 83 chr11 7992095 7992179 -113851677 - Lx7 LINE L1 -1031 6665 6589 6 645 254 226 0 0 chr11 7992586 7992648 -113851208 + B3A SINE B2 1 62 -136 6 645 21 57 0 0 chr11 7992672 7992707 -113851149 + AT_rich Low_complexity Low_complexity 1 35 0 6 645 518 279 108 46 chr11 7993001 7993241 -113850615 - Lx7 LINE L1 -406 7290 7036 6 645 455 239 3 46 chr11 7993325 7993485 -113850371 - L1_Mur3 LINE L1 -902 4984 4842 6 645 318 304 161 59 chr11 7993513 7993601 -113850255 - L1M5 LINE L1 -2006 4140 4055 6 645 1718 38 5 0 chr11 7993601 7993810 -113850046 - L1Md_T LINE L1 -1 6581 6372 6 645 318 308 159 59 chr11 7993810 7994133 -113849723 - L1M5 LINE L1 -2092 4054 3691 6 645 260 266 109 39 chr11 7994719 7994850 -113849006 - MLT1A1 LTR MaLR -18 390 226 6 645 418 273 85 34 chr11 7995047 7995282 -113848574 - L1M5 LINE L1 -2985 3161 2915 6 80 1155 54 0 0 chr11 7995316 7995463 -113848393 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 6 646 1025 336 115 48 chr11 7996384 7997113 -113846743 - MER21B LTR ERV1 -54 809 32 6 646 1042 255 52 17 chr11 7998945 7999232 -113844624 - MTD LTR MaLR -113 306 10 6 646 264 307 53 73 chr11 8002979 8003130 -113840726 + B1_Mur1 SINE Alu 1 148 -1 1 646 311 177 10 0 chr11 8003936 8004032 -113839824 + GA-rich Low_complexity Low_complexity 1 97 0 2 646 2286 151 45 5 chr11 8004706 8005086 -113838770 + MTC LTR MaLR 27 421 0 3 646 261 0 0 0 chr11 8005320 8005349 -113838507 + (TATG)n Simple_repeat Simple_repeat 4 32 0 4 646 228 281 119 38 chr11 8006339 8006498 -113837358 - Lx8 LINE L1 -21 7452 7281 5 646 1460 228 56 73 chr11 8006512 8006848 -113837008 + MTD LTR MaLR 1 336 -83 6 646 240 111 0 0 chr11 8006848 8006884 -113836972 + (TATG)n Simple_repeat Simple_repeat 2 37 0 7 646 1460 228 56 73 chr11 8006884 8006958 -113836898 + MTD LTR MaLR 337 404 -15 6 646 692 266 19 0 chr11 8006981 8007139 -113836717 - Lx8 LINE L1 -228 7245 7085 5 646 308 294 34 68 chr11 8007205 8007322 -113836534 - PB1D10 SINE Alu 0 117 5 8 646 207 0 0 0 chr11 8009088 8009111 -113834745 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 646 234 0 0 0 chr11 8009943 8009969 -113833887 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 646 1335 264 104 16 chr11 8010659 8011033 -113832823 - MTD LTR MaLR -12 407 1 1 646 1064 229 161 89 chr11 8011262 8011910 -113831946 + L1MC1 LINE L1 5312 6005 -339 1 646 2280 226 84 30 chr11 8013101 8013569 -113830287 - Lx6 LINE L1 -208 7252 6755 1 646 276 30 0 0 chr11 8013569 8013602 -113830254 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 1 646 2280 226 84 30 chr11 8013602 8013727 -113830129 - Lx6 LINE L1 -706 6754 6628 1 646 876 314 49 13 chr11 8014336 8014727 -113829129 + Lx8 LINE L1 6837 7241 -232 1 646 1143 82 7 0 chr11 8014737 8014883 -113828973 + B1_Mus1 SINE Alu 2 148 0 1 646 920 95 7 0 chr11 8014923 8015060 -113828796 + (GGAAA)n Simple_repeat Simple_repeat 4 141 0 1 646 343 285 45 19 chr11 8015644 8015798 -113828058 - L1M5 LINE L1 -1032 5114 4957 1 646 22 0 0 0 chr11 8016940 8016962 -113826894 + AT_rich Low_complexity Low_complexity 1 22 0 1 646 360 0 0 0 chr11 8017613 8017653 -113826203 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 646 268 298 60 92 chr11 8017788 8017973 -113825883 + B4A SINE B4 8 186 -106 2 646 762 134 0 0 chr11 8018115 8018242 -113825614 + (GAAA)n Simple_repeat Simple_repeat 4 130 0 2 646 212 290 178 49 chr11 8019669 8019854 -113824002 - L2 LINE L2 -408 3011 2803 2 646 455 242 148 34 chr11 8019873 8020134 -113823722 + Lx7 LINE L1 464 699 -7029 2 646 291 191 0 0 chr11 8020147 8020210 -113823646 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 646 11989 220 64 43 chr11 8020236 8021285 -113822571 + Lx7 LINE L1 689 1763 -4117 2 646 1111 50 0 14 chr11 8021285 8021426 -113822430 + B1_Mus1 SINE Alu 1 139 -9 2 646 11989 212 93 68 chr11 8021426 8023897 -113819959 + Lx7 LINE L1 1764 4260 -1620 2 646 250 26 51 0 chr11 8023897 8023936 -113819920 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 646 11989 212 93 68 chr11 8023936 8024005 -113819851 + Lx7 LINE L1 4261 4328 -1552 2 646 189 0 0 0 chr11 8024005 8024026 -113819830 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 646 11989 212 80 43 chr11 8024026 8026684 -113817172 + Lx7 LINE L1 4329 7128 -568 2 646 3566 15 0 0 chr11 8026684 8027080 -113816776 - MTA_Mm LTR MaLR 0 396 1 2 646 7022 211 69 23 chr11 8027080 8027307 -113816549 + Lx7 LINE L1 7129 7367 -329 2 646 464 160 21 0 chr11 8027309 8027403 -113816453 + CT-rich Low_complexity Low_complexity 3 98 0 3 646 400 282 86 35 chr11 8027417 8027707 -113816149 + Lx7 LINE L1 7366 7670 -26 2 646 221 0 35 0 chr11 8027709 8027738 -113816118 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 646 189 256 179 49 chr11 8027749 8027872 -113815984 + L2 LINE L2 1993 2131 -1288 3 646 307 149 0 0 chr11 8027900 8027947 -113815909 - URR1B DNA MER1_type 0 225 179 3 646 266 268 85 0 chr11 8028039 8028121 -113815735 + MLT1F2 LTR MaLR 44 132 -428 3 646 378 242 0 31 chr11 8028377 8028475 -113815381 - MLT1A1 LTR MaLR -16 392 298 3 646 254 333 22 29 chr11 8029050 8029189 -113814667 - Lx8 LINE L1 -375 7098 6961 3 646 473 279 150 38 chr11 8029316 8029476 -113814380 - B3A SINE B2 -20 178 1 3 646 342 347 39 25 chr11 8029753 8029957 -113813899 + L1M4 LINE L1 8 214 -6328 3 646 232 206 28 38 chr11 8029987 8030093 -113813763 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 646 232 189 19 19 chr11 8030238 8030292 -113813564 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 646 208 87 64 21 chr11 8030484 8030531 -113813325 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 4 646 932 266 67 82 chr11 8030736 8031167 -113812689 - RLTR26 LTR ERVK -187 455 2 4 646 551 112 0 10 chr11 8031175 8031274 -113812582 + (TATG)n Simple_repeat Simple_repeat 2 99 0 4 646 249 253 68 68 chr11 8032503 8032639 -113811217 - MIR SINE MIR -38 230 88 4 646 471 79 0 0 chr11 8033857 8033920 -113809936 - L1_Mus1 LINE L1 -685 5882 5820 4 646 5542 55 4 7 chr11 8033921 8034620 -113809236 + L1_Mus1 LINE L1 5870 6566 -1 4 646 227 267 26 13 chr11 8035298 8035374 -113808482 - ID4 SINE ID -6 77 1 4 646 526 292 97 73 chr11 8035618 8035988 -113807868 + MTE2a LTR MaLR 1 379 0 4 646 2708 83 5 3 chr11 8035999 8036374 -113807482 + L1_Mus3 LINE L1 6260 6635 -3 4 646 222 62 0 0 chr11 8036704 8036736 -113807120 + (A)n Simple_repeat Simple_repeat 1 32 0 4 646 2597 181 74 14 chr11 8039553 8040040 -113803816 - RMER20A LTR ERVK 0 516 1 5 646 466 101 0 43 chr11 8041239 8041332 -113802524 + (GGGAGA)n Simple_repeat Simple_repeat 2 90 0 5 646 243 0 0 0 chr11 8041751 8041778 -113802078 + (A)n Simple_repeat Simple_repeat 1 27 0 5 646 1456 201 122 122 chr11 8042518 8043050 -113800806 + MT2A LTR ERVL 2 533 0 5 646 485 291 28 21 chr11 8043804 8043948 -113799908 + ID_B1 SINE B4 80 224 0 5 646 185 375 0 11 chr11 8045308 8045397 -113798459 + MIRb SINE MIR 166 253 -15 5 646 386 306 13 40 chr11 8045792 8045942 -113797914 + RSINE1 SINE B4 4 149 -16 5 646 470 17 0 17 chr11 8045947 8046007 -113797849 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 646 613 278 19 56 chr11 8046336 8046496 -113797360 + RSINE1 SINE B4 12 165 0 5 646 408 254 126 55 chr11 8046633 8046816 -113797040 - MLT1E1A LTR MaLR -9 671 476 5 646 564 15 0 0 chr11 8047310 8047375 -113796481 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 646 1192 270 170 10 chr11 8047708 8048209 -113795647 - MLT1E1A-int LTR MaLR -562 927 347 5 646 354 345 32 43 chr11 8048268 8048456 -113795400 - MLT1E1A-int LTR MaLR -1258 231 46 5 646 236 286 154 82 chr11 8048466 8048670 -113795186 - MLT1E1A LTR MaLR -379 274 73 5 646 262 190 110 47 chr11 8048759 8048886 -113794970 + L1MC4 LINE L1 926 1060 -5155 6 646 327 104 0 0 chr11 8048886 8048934 -113794922 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 6 646 711 35 0 0 chr11 8048934 8049020 -113794836 + (GAGAA)n Simple_repeat Simple_repeat 4 89 0 6 646 241 155 86 0 chr11 8049112 8049170 -113794686 + Lx9 LINE L1 7575 7637 -7 6 646 33870 35 1 0 chr11 8049362 8055002 -113788854 + L1Md_T LINE L1 1 5589 -297 6 646 9056 4 0 0 chr11 8055002 8055998 -113787858 + L1Md_T LINE L1 5590 6585 0 6 646 306 253 67 0 chr11 8057052 8057127 -113786729 + ID4_ SINE ID 2 81 -2 6 646 270 294 218 31 chr11 8057127 8057245 -113786611 + B4 SINE B4 2 230 -62 6 646 595 260 51 76 chr11 8058002 8058160 -113785696 - RSINE1 SINE B4 0 165 12 6 646 2732 112 21 62 chr11 8058796 8059281 -113784575 - Lx LINE L1 -1 6653 6189 6 646 939 43 0 0 chr11 8059637 8059753 -113784103 + (GGAAA)n Simple_repeat Simple_repeat 3 118 0 7 646 1173 108 0 0 chr11 8059754 8059930 -113783926 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 7 646 640 242 74 88 chr11 8060129 8060346 -113783510 + B3 SINE B2 2 215 -1 7 646 1077 332 53 29 chr11 8060702 8061687 -113782169 + L1M2 LINE L1 2166 3171 -2972 7 646 1222 101 10 50 chr11 8061687 8061885 -113781971 + B2_Mm1t SINE B2 1 190 -3 7 646 1077 332 53 29 chr11 8061885 8062021 -113781835 + L1M2 LINE L1 3172 3314 -2829 7 646 1669 325 96 22 chr11 8062048 8063396 -113780460 + L1_Mur3 LINE L1 4078 5547 -333 7 646 4043 123 27 113 chr11 8063396 8064278 -113779578 - RLTR13D1 LTR ERVK 0 806 1 7 646 1669 325 96 22 chr11 8064278 8064597 -113779259 + L1_Mur3 LINE L1 5548 5869 -11 7 646 488 294 119 5 chr11 8064856 8065058 -113778798 + MER2 DNA MER2_type 74 298 -47 7 646 992 162 122 61 chr11 8065192 8065487 -113778369 - Lx7 LINE L1 0 7696 7384 7 646 1937 228 53 61 chr11 8065519 8066145 -113777711 - Lx6 LINE L1 -26 7434 6814 7 646 224 315 129 11 chr11 8066146 8066239 -113777617 + MIRm SINE MIR 87 190 -86 8 646 698 284 84 89 chr11 8066259 8066618 -113777238 - ORR1E LTR MaLR -2 357 1 8 646 513 333 25 6 chr11 8066618 8066761 -113777095 - MTE-int LTR MaLR -53 1527 1382 8 646 3155 190 42 77 chr11 8066761 8067895 -113775961 + RMER12 LTR ERVK 1 1550 -22 8 646 22 0 0 0 chr11 8067937 8067959 -113775897 + AT_rich Low_complexity Low_complexity 1 22 0 8 646 180 275 0 38 chr11 8069833 8069886 -113773970 + L2c LINE L2 3260 3310 -77 8 646 305 215 11 0 chr11 8070179 8070272 -113773584 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 8 646 2980 137 27 27 chr11 8072531 8073043 -113770813 + RLTR28 LTR ERVL 3 514 -10 8 646 459 126 0 0 chr11 8073248 8073343 -113770513 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 8 646 380 371 124 30 chr11 8073349 8073721 -113770135 + L1MC1 LINE L1 390 796 -5249 8 646 244 259 60 35 chr11 8074085 8074201 -113769655 - ORR1E LTR MaLR 0 370 252 9 646 399 251 124 81 chr11 8074222 8074408 -113769448 - ORR1E LTR MaLR -165 194 1 9 646 457 281 80 15 chr11 8074413 8074612 -113769244 + L1MC1 LINE L1 1367 1578 -5173 8 646 226 333 42 25 chr11 8074662 8074782 -113769074 - MTEa LTR MaLR -9 370 249 9 646 329 231 75 21 chr11 8075417 8075510 -113768346 + RLTR23 LTR ERV1 333 430 0 9 646 731 266 91 101 chr11 8075556 8075994 -113767862 - RLTR12B LTR ERVK -43 485 52 9 646 7768 38 8 2 chr11 8075996 8077296 -113766560 - L1Md_F2 LINE L1 0 6582 5276 9 646 9824 65 0 0 chr11 8077293 8078621 -113765235 + L1Md_F2 LINE L1 3944 5271 -612 9 646 1469 283 134 24 chr11 8078662 8079462 -113764394 - L1M2 LINE L1 -888 5255 4365 9 646 531 0 0 0 chr11 8079462 8079521 -113764335 + (TTC)n Simple_repeat Simple_repeat 2 60 0 9 646 1469 283 134 24 chr11 8079521 8079765 -113764091 - L1M2 LINE L1 -1779 4364 4097 9 646 305 222 0 0 chr11 8079792 8079864 -113763992 + L1MC1 LINE L1 1963 2034 -4717 8 646 227 222 0 16 chr11 8080263 8080327 -113763529 + (TAAA)n Simple_repeat Simple_repeat 1 63 0 9 646 23356 153 22 8 chr11 8080423 8086640 -113757216 + Lx LINE L1 356 6653 -1 9 646 339 267 44 0 chr11 8086657 8086792 -113757064 + L1MC1 LINE L1 2594 2734 -3830 8 646 445 321 96 53 chr11 8086798 8087489 -113756367 + L1MC1 LINE L1 3078 3797 -2767 8 646 240 59 0 0 chr11 8087500 8087534 -113756322 + (A)n Simple_repeat Simple_repeat 1 34 0 9 646 330 298 27 76 chr11 8087696 8087921 -113755935 + L1MC1 LINE L1 4838 5051 -1513 8 646 250 290 29 47 chr11 8088189 8088359 -113755497 + L1MC1 LINE L1 5419 5585 -979 8 646 561 146 24 16 chr11 8088457 8088582 -113755274 + Lx9 LINE L1 7360 7485 -159 1 646 723 302 43 46 chr11 8088568 8088761 -113755095 + L1MC1 LINE L1 5960 6154 -597 8 646 842 278 75 64 chr11 8088761 8089134 -113754722 - MTEa LTR MaLR -2 377 1 1 646 723 302 43 46 chr11 8089134 8089287 -113754569 + L1MC1 LINE L1 6155 6305 -446 8 646 2895 189 56 11 chr11 8090575 8091127 -113752729 - RLTR20B3 LTR ERVK 0 577 1 1 646 4964 166 39 9 chr11 8091127 8092202 -113751654 - MYSERV16_I-int LTR ERVK -1 2325 1219 1 646 310 179 0 0 chr11 8092203 8092259 -113751597 - RLTR20B3 LTR ERVK -521 56 1 1 646 1688 171 209 8 chr11 8092706 8093141 -113750715 + MT2B LTR ERVL 3 475 0 1 646 393 234 84 30 chr11 8093632 8093835 -113750021 + L1M5 LINE L1 5066 5279 -867 1 646 391 341 64 23 chr11 8093885 8094104 -113749752 + L1M5 LINE L1 5349 5576 -586 1 646 231 264 55 14 chr11 8094357 8094430 -113749426 + MurSatRep1 Unknown Unknown 170 245 -1892 1 646 421 182 0 0 chr11 8094459 8094547 -113749309 + CT-rich Low_complexity Low_complexity 5 92 0 1 646 2226 159 13 3 chr11 8095283 8095655 -113748201 - ORR1C1 LTR MaLR 0 378 3 1 646 673 280 109 58 chr11 8095990 8096320 -113747536 + LTR52 LTR ERVL 59 405 -16 1 646 381 93 0 0 chr11 8097509 8097563 -113746293 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1 646 243 224 0 0 chr11 8097594 8097643 -113746213 + B3 SINE B2 159 207 -9 1 646 25 31 0 0 chr11 8097911 8097943 -113745913 + AT_rich Low_complexity Low_complexity 1 32 0 1 646 752 293 15 5 chr11 8098589 8098788 -113745068 + B3 SINE B2 5 205 -11 1 646 861 251 53 14 chr11 8100870 8101273 -113742583 + Lx7 LINE L1 7159 7680 -16 1 646 210 226 16 16 chr11 8101273 8101336 -113742520 + A-rich Low_complexity Low_complexity 4 66 0 1 646 268 277 47 56 chr11 8101641 8101748 -113742108 - MIR SINE MIR -77 185 80 1 646 648 36 0 0 chr11 8102791 8102874 -113740982 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 646 353 350 60 18 chr11 8104386 8104604 -113739252 - MER74A LTR ERVL -1 557 331 1 646 558 301 18 32 chr11 8105830 8106050 -113737806 + MLT1B LTR MaLR 144 360 -30 1 646 1654 208 118 51 chr11 8106506 8106995 -113736861 + RMER19C LTR ERVK 80 611 0 1 646 469 193 105 40 chr11 8107731 8107759 -113736097 + RLTR16 LTR ERVK 374 401 -104 1 646 513 0 0 0 chr11 8107759 8107816 -113736040 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 646 469 193 105 40 chr11 8107816 8107911 -113735945 + RLTR16 LTR ERVK 402 503 -2 1 646 4018 81 24 36 chr11 8108081 8108667 -113735189 - L1_Mus2 LINE L1 0 6566 5988 1 646 1154 170 207 17 chr11 8110318 8110664 -113733192 - MTD LTR MaLR -7 412 1 1 646 3180 60 5 0 chr11 8112212 8112614 -113731242 + L1_Mus1 LINE L1 6164 6567 0 1 646 255 326 71 0 chr11 8112640 8112738 -113731118 + MIRb SINE MIR 72 176 -92 1 646 477 47 0 0 chr11 8113362 8113426 -113730430 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 646 205 113 94 0 chr11 8113920 8113973 -113729883 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 646 243 284 15 15 chr11 8114043 8114111 -113729745 + L2b LINE L2 3308 3375 0 1 646 441 0 0 0 chr11 8114864 8114913 -113728943 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 646 801 73 0 0 chr11 8114997 8115106 -113728750 + (TCCCC)n Simple_repeat Simple_repeat 3 111 0 1 646 213 121 0 0 chr11 8115436 8115469 -113728387 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 1 646 213 196 0 0 chr11 8118832 8118883 -113724973 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 646 365 123 0 15 chr11 8119560 8119626 -113724230 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1 646 209 260 118 31 chr11 8120178 8120305 -113723551 + MIR SINE MIR 22 159 -103 1 646 428 136 11 0 chr11 8121162 8121250 -113722606 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 646 187 340 40 0 chr11 8123512 8123612 -113720244 - MIR SINE MIR -125 137 34 1 646 1342 45 11 6 chr11 8124146 8124323 -113719533 + L1Md_F3 LINE L1 6407 6584 0 1 646 309 136 0 0 chr11 8124348 8124414 -113719442 + (A)n Simple_repeat Simple_repeat 1 66 0 1 646 236 30 0 29 chr11 8125157 8125191 -113718665 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 646 580 265 8 0 chr11 8125199 8125331 -113718525 - RSINE1 SINE B4 -29 136 4 1 80 235 330 0 19 chr11 8126463 8126568 -113717288 + L2 LINE L2 1946 2048 -1371 1 647 520 299 102 36 chr11 8127424 8127698 -113716158 + B4A SINE B4 1 292 0 1 647 260 188 16 0 chr11 8127698 8127762 -113716094 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 647 397 308 58 53 chr11 8128624 8128984 -113714872 + MLT1A0 LTR MaLR 2 363 -2 1 647 405 290 56 37 chr11 8129091 8129252 -113714604 + Lx8 LINE L1 7032 7195 -278 1 647 275 0 29 0 chr11 8130425 8130460 -113713396 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1 647 888 249 5 19 chr11 8130616 8130825 -113713031 + B3 SINE B2 1 206 -10 1 647 2419 66 9 12 chr11 8131734 8132055 -113711801 - L1_Mus3 LINE L1 -15 6623 6304 1 647 326 295 0 0 chr11 8133802 8133880 -113709976 - ID4 SINE ID -3 80 3 1 647 2968 72 42 5 chr11 8134532 8134738 -113709118 + BGLII LTR ERVK 1 220 -201 1 647 909 28 0 0 chr11 8134738 8134846 -113709010 + (GGGAGA)n Simple_repeat Simple_repeat 3 110 0 1 647 2968 72 42 5 chr11 8134846 8135045 -113708811 + BGLII LTR ERVK 221 421 0 1 647 469 253 103 9 chr11 8135092 8135315 -113708541 + L1MD LINE L1 4432 4675 -1471 1 647 22 56 0 0 chr11 8135420 8135456 -113708400 + AT_rich Low_complexity Low_complexity 1 36 0 1 647 1017 261 134 9 chr11 8135481 8135810 -113708046 - ORR1D2 LTR MaLR 0 370 1 1 647 345 290 93 7 chr11 8135845 8135984 -113707872 + L1M4 LINE L1 5396 5546 -632 1 647 2102 287 102 65 chr11 8138000 8138850 -113705006 - Lx8 LINE L1 -142 7331 6450 1 647 492 18 0 0 chr11 8139035 8139092 -113704764 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 647 318 298 3 1 chr11 8139649 8139753 -113704103 + B1_Mus2 SINE Alu 14 118 -2 1 647 384 297 88 10 chr11 8140063 8140137 -113703719 + MLT1A1 LTR MaLR 188 271 -137 1 647 3156 156 73 43 chr11 8140137 8140457 -113703399 - RMER6C LTR ERVK 0 690 357 1 647 306 0 0 0 chr11 8140457 8140491 -113703365 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 647 3156 156 73 43 chr11 8140491 8140840 -113703016 - RMER6C LTR ERVK -334 356 1 1 647 384 297 88 10 chr11 8140840 8140959 -113702897 + MLT1A1 LTR MaLR 272 395 -13 1 647 382 277 75 8 chr11 8141024 8141144 -113702712 + B1F SINE Alu 14 141 -8 1 647 378 214 0 0 chr11 8141256 8141340 -113702516 + GA-rich Low_complexity Low_complexity 2 85 0 1 647 488 299 68 38 chr11 8142793 8143029 -113700827 + MLT1A0 LTR MaLR 123 365 0 1 647 238 347 42 0 chr11 8143201 8143221 -113700635 + ID SINE ID 61 83 -141 1 647 274 241 184 0 chr11 8143221 8143308 -113700548 + PB1D9 SINE Alu 3 105 -15 1 647 5471 105 7 7 chr11 8144358 8145243 -113698613 + L1VL4 LINE L1 194 1081 -2478 1 647 944 103 157 17 chr11 8145233 8145411 -113698445 + Lx LINE L1 6452 6654 0 1 647 37 62 0 0 chr11 8145896 8145961 -113697895 + AT_rich Low_complexity Low_complexity 1 65 0 1 647 552 208 3 1 chr11 8147436 8147554 -113696302 + B1_Mm SINE Alu 1 120 0 1 647 180 0 0 0 chr11 8147554 8147574 -113696282 + (A)n Simple_repeat Simple_repeat 1 20 0 1 647 210 344 11 11 chr11 8148809 8148903 -113694953 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 647 1235 73 85 0 chr11 8150160 8150325 -113693531 + B2_Mm2 SINE B2 3 181 -14 1 647 483 156 55 0 chr11 8150744 8150853 -113693003 + Lx2A1 LINE L1 6889 7003 -5 1 647 227 210 0 16 chr11 8150859 8150889 -113692967 + polypurine Low_complexity Low_complexity 4 33 0 1 647 806 78 9 0 chr11 8150889 8151004 -113692852 + (GAA)n Simple_repeat Simple_repeat 3 118 0 1 647 227 210 0 16 chr11 8151004 8151036 -113692820 + polypurine Low_complexity Low_complexity 34 64 0 1 647 723 91 33 0 chr11 8151034 8151155 -113692701 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 1 647 298 264 32 72 chr11 8153011 8153122 -113690734 + B3 SINE B2 2 109 -86 1 647 796 209 139 0 chr11 8153173 8153360 -113690496 + B3 SINE B2 1 213 -3 1 647 614 335 30 15 chr11 8154385 8154655 -113689201 - MER2 DNA MER2_type -63 282 9 1 647 220 155 26 66 chr11 8154856 8154932 -113688924 + A-rich Low_complexity Low_complexity 3 75 0 1 647 2052 183 37 5 chr11 8155408 8155788 -113688068 + MTC LTR MaLR 30 421 0 1 647 1335 223 121 16 chr11 8155806 8156193 -113687663 - Lx9 LINE L1 -5 7639 7212 1 647 271 151 38 0 chr11 8156295 8156348 -113687508 - B3A SINE B2 -143 55 1 1 647 585 309 74 31 chr11 8156775 8157032 -113686824 + MTE2a LTR MaLR 101 368 -11 1 647 414 269 61 43 chr11 8157776 8157939 -113685917 - MTEa LTR MaLR -14 365 200 1 647 7261 100 4 4 chr11 8158081 8159542 -113684314 - L1_Mus1 LINE L1 0 6567 5106 1 647 6044 136 9 35 chr11 8159541 8161099 -113682757 - L1_Mus1 LINE L1 -3770 2113 589 1 647 674 125 0 9 chr11 8161148 8161261 -113682595 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 1 647 823 59 41 3 chr11 8161263 8161378 -113682478 - B1_Mm SINE Alu -3 144 29 1 647 244 118 0 0 chr11 8161378 8161412 -113682444 + PB1D9 SINE Alu 1 34 -86 1 647 22 0 0 0 chr11 8162225 8162247 -113681609 + AT_rich Low_complexity Low_complexity 1 22 0 1 647 904 136 7 7 chr11 8162367 8162508 -113681348 + B1_Mus1 SINE Alu 3 143 -5 1 647 420 276 118 27 chr11 8165197 8165383 -113678473 - MER44B DNA MER2_type 0 550 348 1 647 285 319 11 0 chr11 8165393 8165487 -113678369 - MER44B DNA MER2_type -433 117 23 1 647 596 249 25 0 chr11 8165632 8165774 -113678082 + B1_Mur1 SINE Alu 3 149 0 1 647 423 151 0 0 chr11 8167040 8167133 -113676723 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 647 331 289 156 31 chr11 8167133 8167358 -113676498 - MLT1A0 LTR MaLR -7 358 106 1 647 425 340 42 65 chr11 8168230 8168447 -113675409 + MER20 DNA MER1_type 3 214 -5 1 647 659 205 122 5 chr11 8169897 8170093 -113673763 - ORR1D1 LTR MaLR -8 366 148 2 647 410 224 20 0 chr11 8170192 8170290 -113673566 - MTE2a LTR MaLR -2 377 278 2 647 288 182 76 0 chr11 8170286 8170352 -113673504 - MTE2a LTR MaLR -308 71 1 2 647 3302 146 12 14 chr11 8170586 8171163 -113672693 + IAPEy-int LTR ERVK 483 1058 -6455 2 647 22330 45 4 6 chr11 8171163 8173879 -113669977 + IAPEy-int LTR ERVK 4804 7513 0 2 647 3379 29 3 0 chr11 8173879 8174263 -113669593 + IAPEY_LTR LTR ERVK 1 385 0 2 647 328 296 0 58 chr11 8174670 8174824 -113669032 + B1F2 SINE Alu 5 149 0 2 647 657 38 0 0 chr11 8176331 8176411 -113667445 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 647 267 361 0 0 chr11 8176419 8176538 -113667318 + CT-rich Low_complexity Low_complexity 2 120 0 2 647 1097 146 32 55 chr11 8176683 8176900 -113666956 + L1_Mm LINE L1 5176 5387 -496 2 647 2268 46 0 44 chr11 8176897 8177195 -113666661 - L1_Mus3 LINE L1 -620 6018 5734 2 647 486 277 0 60 chr11 8177478 8177628 -113666228 - RSINE1 SINE B4 0 165 25 2 647 352 307 76 0 chr11 8177937 8178120 -113665736 - L1M2 LINE L1 -878 6121 5909 2 647 1459 68 0 0 chr11 8178349 8178540 -113665316 - L1_Mus1 LINE L1 0 6567 6377 2 647 842 288 89 69 chr11 8178543 8178833 -113665023 - L1M2 LINE L1 -977 5868 5595 2 647 648 254 133 0 chr11 8178833 8179014 -113664842 - B3 SINE B2 -7 209 5 2 647 842 291 92 75 chr11 8179014 8179566 -113664290 - L1M2 LINE L1 -1251 5594 4972 2 647 487 293 141 65 chr11 8180111 8180359 -113663497 - MLT2B3 LTR ERVL -50 504 238 2 647 254 323 69 69 chr11 8180396 8180599 -113663257 - MLT1I LTR MaLR -136 275 73 2 647 596 300 43 10 chr11 8180797 8181006 -113662850 + ORR1E LTR MaLR 2 217 -142 2 647 3454 21 5 2 chr11 8181421 8181858 -113661998 + ORR1A0-int LTR MaLR 1355 1792 0 2 647 3096 26 0 0 chr11 8181858 8182204 -113661652 + ORR1A0 LTR MaLR 1 346 0 2 647 255 292 10 20 chr11 8182213 8182311 -113661545 - L1M2 LINE L1 -4265 2584 2488 2 647 207 117 65 32 chr11 8182502 8182564 -113661292 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 2 647 805 238 39 39 chr11 8182564 8182857 -113660999 + RMER5 LTR ERV1 80 437 -97 2 647 551 122 61 0 chr11 8182869 8182967 -113660889 - RMER5 LTR ERV1 -430 104 1 2 647 1746 163 71 3 chr11 8183039 8183365 -113660491 - MTC LTR MaLR -44 377 30 2 647 231 36 0 0 chr11 8183814 8183842 -113660014 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 647 209 160 77 39 chr11 8184466 8184570 -113659286 + CT-rich Low_complexity Low_complexity 3 110 0 2 647 1405 258 40 20 chr11 8184640 8185058 -113658798 - MTD LTR MaLR -20 399 2 2 647 204 125 0 0 chr11 8185153 8185185 -113658671 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 647 204 111 0 0 chr11 8186520 8186556 -113657300 + (TTGG)n Simple_repeat Simple_repeat 1 36 0 2 647 2913 48 58 8 chr11 8187298 8187675 -113656181 - MTA_Mm LTR MaLR 0 396 1 2 647 3484 23 5 0 chr11 8187781 8188175 -113655681 + MTA_Mm LTR MaLR 1 396 0 2 647 226 327 53 26 chr11 8188572 8188685 -113655171 - MLT1H LTR MaLR -432 117 2 2 647 315 0 0 0 chr11 8189618 8189653 -113654203 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 647 217 235 0 0 chr11 8189809 8189860 -113653996 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 647 198 0 0 0 chr11 8190192 8190214 -113653642 + (A)n Simple_repeat Simple_repeat 1 22 0 2 647 213 178 0 0 chr11 8190227 8190272 -113653584 + GA-rich Low_complexity Low_complexity 2 46 0 2 647 203 0 37 0 chr11 8190931 8190958 -113652898 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 647 29 47 0 0 chr11 8191325 8191368 -113652488 + AT_rich Low_complexity Low_complexity 1 43 0 2 647 711 332 91 0 chr11 8191566 8191840 -113652016 + Lx8 LINE L1 6925 7223 -250 2 647 252 235 0 0 chr11 8191944 8192012 -113651844 + RMER15 LTR ERVL 403 470 -105 2 647 316 340 33 4 chr11 8192704 8192946 -113650910 + L1M2c LINE L1 1632 1880 -4909 2 647 560 267 87 0 chr11 8193066 8193216 -113650640 - RSINE1 SINE B4 0 165 3 2 647 411 330 45 5 chr11 8194226 8194481 -113649375 + L1MB5 LINE L1 5711 5973 -211 2 647 4399 82 0 0 chr11 8194882 8195444 -113648412 + L1_Mus1 LINE L1 6000 6561 -6 2 647 189 0 0 0 chr11 8195462 8195483 -113648373 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 647 583 286 21 49 chr11 8195710 8195928 -113647928 - B3A SINE B2 -13 203 2 2 647 417 198 0 0 chr11 8196366 8196457 -113647399 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 647 1014 223 79 28 chr11 8196571 8196861 -113646995 - RMER15 LTR ERVL -40 535 231 2 647 474 257 138 11 chr11 8196988 8197177 -113646679 + MER2 DNA MER2_type 86 298 -47 2 647 817 298 132 44 chr11 8198025 8198815 -113645041 + L1MCa LINE L1 744 1602 -4906 2 647 537 231 0 0 chr11 8198871 8198979 -113644877 + PB1D10 SINE Alu 3 110 -7 2 647 536 220 103 68 chr11 8199213 8199447 -113644409 + MTD-int LTR MaLR 1015 1256 -2 2 647 606 202 171 17 chr11 8199449 8199625 -113644231 + MTD LTR MaLR 1 203 -216 2 647 932 47 0 30 chr11 8199627 8199745 -113644111 + B1_Mus1 SINE Alu 20 137 -11 2 647 695 71 0 10 chr11 8199745 8199844 -113644012 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 2 647 932 47 0 30 chr11 8199844 8199858 -113643998 + B1_Mus1 SINE Alu 138 148 0 2 647 862 201 56 0 chr11 8199864 8200043 -113643813 + MTD LTR MaLR 223 411 -8 2 647 222 37 0 0 chr11 8200079 8200106 -113643750 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 2 647 351 0 0 0 chr11 8200107 8200146 -113643710 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 647 347 281 66 0 chr11 8200146 8200267 -113643589 - L1M2 LINE L1 -1922 4221 4093 2 647 629 241 176 8 chr11 8200262 8200500 -113643356 + L1M2 LINE L1 2514 2791 -3352 2 647 226 246 16 16 chr11 8200627 8200689 -113643167 + L1M2 LINE L1 4282 4343 -1800 2 647 335 339 256 3 chr11 8201148 8201451 -113642405 - MLT2B1 LTR ERVL -70 450 72 2 647 285 358 24 0 chr11 8203191 8203314 -113640542 - MIR SINE MIR -116 146 21 2 647 231 303 26 0 chr11 8203891 8203967 -113639889 + MER2B DNA MER2_type 4 81 -255 2 647 592 288 79 114 chr11 8203996 8204364 -113639492 - MTEa LTR MaLR -24 355 1 2 647 340 306 87 38 chr11 8204441 8204749 -113639107 + L1MA6 LINE L1 5979 6297 0 2 647 574 287 59 80 chr11 8204756 8205044 -113638812 + B4 SINE B4 11 292 0 2 647 630 213 8 0 chr11 8205058 8205316 -113638540 + (CA)n Simple_repeat Simple_repeat 1 260 0 2 647 297 0 0 0 chr11 8206426 8206459 -113637397 + (A)n Simple_repeat Simple_repeat 1 33 0 2 647 334 286 0 0 chr11 8208708 8208799 -113635057 - L1MC LINE L1 -2527 3619 3529 2 647 853 251 105 133 chr11 8208799 8209025 -113634831 + MTE2a LTR MaLR 1 191 -188 2 647 3079 64 10 0 chr11 8209025 8209417 -113634439 - MTA_Mm LTR MaLR 0 396 1 2 647 853 251 105 133 chr11 8209417 8209580 -113634276 + MTE2a LTR MaLR 192 379 0 2 647 971 238 74 18 chr11 8209603 8209993 -113633863 - L1MC LINE L1 -2669 3477 3066 2 647 229 268 146 0 chr11 8210076 8210158 -113633698 - RMER10A LTR ERVL -31 411 318 2 647 252 253 156 10 chr11 8210652 8210748 -113633108 - PB1D10 SINE Alu -7 110 1 2 647 7091 170 83 18 chr11 8211193 8212520 -113631336 - Lx5 LINE L1 0 7050 5616 2 647 4135 187 99 20 chr11 8212520 8213362 -113630494 + RMER13B LTR ERVK 1 908 0 2 647 7091 131 27 8 chr11 8213362 8214154 -113629702 - Lx5 LINE L1 -262 5615 4799 2 647 243 0 0 0 chr11 8214154 8214181 -113629675 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 647 7091 131 27 8 chr11 8214181 8214301 -113629555 - Lx5 LINE L1 -1079 4798 4679 2 647 237 65 0 0 chr11 8214301 8214332 -113629524 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 647 29 47 0 0 chr11 8214839 8214882 -113628974 + AT_rich Low_complexity Low_complexity 1 43 0 2 647 690 251 69 35 chr11 8214892 8215094 -113628762 + B3 SINE B2 2 210 -6 2 647 2914 141 34 29 chr11 8215492 8216017 -113627839 + RMER17C-int LTR ERVK 1898 2425 -813 2 647 3526 137 24 4 chr11 8216019 8216562 -113627294 + L1VL4 LINE L1 215 768 -5534 2 647 3183 82 39 2 chr11 8216531 8217042 -113626814 + MusHAL1 LINE L1 357 886 -1826 2 647 526 284 151 0 chr11 8217437 8217655 -113626201 + Lx6 LINE L1 7184 7434 -26 2 647 4504 75 35 9 chr11 8217658 8218317 -113625539 + MusHAL1 LINE L1 475 1150 -1562 2 647 31201 89 4 2 chr11 8218318 8220667 -113623189 + L1Md_F3 LINE L1 481 2776 -3107 2 647 2024 16 177 0 chr11 8220667 8220915 -113622941 - RLTR10B LTR ERVK 0 292 1 2 647 31201 52 2 0 chr11 8220915 8223722 -113620134 + L1Md_F3 LINE L1 2777 5586 -297 2 647 8826 39 1 1 chr11 8223722 8224719 -113619137 + L1Md_F3 LINE L1 5587 6583 -1 2 647 393 78 0 0 chr11 8224728 8224779 -113619077 + MusHAL1 LINE L1 1154 1204 -1508 2 647 7517 58 7 0 chr11 8224756 8225684 -113618172 + L1Md_F2 LINE L1 4653 5586 -297 2 647 8754 43 1 4 chr11 8225684 8226683 -113617173 + L1Md_F2 LINE L1 5587 6582 0 2 647 12125 151 29 16 chr11 8226687 8228877 -113614979 + L1_Mur1 LINE L1 2400 4619 -1267 2 647 14933 84 19 62 chr11 8228877 8231957 -113611899 + L1Md_F LINE L1 418 3365 -2518 2 647 1951 134 18 18 chr11 8231963 8232296 -113611560 + RMER17C-int LTR ERVK 2411 2743 -495 2 647 431 254 0 32 chr11 8232296 8232422 -113611434 - L1VL2 LINE L1 -6100 235 114 2 647 245 213 98 45 chr11 8232471 8232604 -113611252 - Lx8 LINE L1 0 7473 7334 2 647 529 281 73 46 chr11 8232598 8232667 -113611189 - Lx8 LINE L1 -50 7423 7348 2 647 644 257 35 0 chr11 8232667 8232811 -113611045 - B1_Mur3 SINE Alu 0 149 1 2 647 529 281 73 46 chr11 8232811 8233002 -113610854 - Lx8 LINE L1 -126 7347 7156 2 647 2783 269 48 28 chr11 8233018 8233812 -113610044 - Lx8 LINE L1 -475 6998 6189 2 647 3283 68 13 0 chr11 8235952 8236347 -113607509 + MTB LTR MaLR 1 400 0 2 647 525 300 78 67 chr11 8236451 8236719 -113607137 + Lx8 LINE L1 7116 7386 -87 2 647 22 0 0 0 chr11 8236775 8236797 -113607059 + AT_rich Low_complexity Low_complexity 1 22 0 2 647 1252 285 82 18 chr11 8237610 8238060 -113605796 + Lx9 LINE L1 6344 6822 -822 2 647 243 0 0 0 chr11 8238060 8238087 -113605769 + (T)n Simple_repeat Simple_repeat 1 27 0 2 647 26 0 0 0 chr11 8238221 8238247 -113605609 + AT_rich Low_complexity Low_complexity 1 26 0 2 647 570 15 0 0 chr11 8238763 8238830 -113605026 + (GAAA)n Simple_repeat Simple_repeat 1 67 0 2 647 195 42 0 0 chr11 8239243 8239267 -113604589 + (A)n Simple_repeat Simple_repeat 1 24 0 2 647 325 305 152 0 chr11 8239687 8239805 -113604051 + Lx9 LINE L1 6808 6943 -701 2 647 694 268 209 16 chr11 8239807 8240056 -113603800 - ORR1D1 LTR MaLR -61 313 17 2 647 895 321 58 14 chr11 8240311 8240671 -113603185 + Lx9 LINE L1 7078 7453 -191 2 647 610 258 107 40 chr11 8241788 8242087 -113601769 - L1M5 LINE L1 -561 5618 5300 2 647 2479 133 53 45 chr11 8242207 8242625 -113601231 - MTC LTR MaLR 0 421 1 2 647 476 232 194 102 chr11 8242884 8242918 -113600938 + MTD LTR MaLR 1 20 -387 3 647 333 0 0 0 chr11 8242918 8242955 -113600901 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 647 500 224 84 47 chr11 8242955 8243126 -113600730 + MTD LTR MaLR 21 240 -181 3 647 4025 149 24 3 chr11 8243292 8243951 -113599905 + RLTR33 LTR ERVK 2 674 -4 3 647 921 171 33 33 chr11 8243958 8244139 -113599717 + MTD LTR MaLR 239 419 0 3 647 319 333 89 84 chr11 8244752 8244965 -113598891 - MLT2C2 LTR ERVL -249 215 2 3 647 264 336 64 0 chr11 8245640 8245750 -113598106 + ORR1E LTR MaLR 22 138 -221 3 647 1017 327 141 76 chr11 8246024 8246330 -113597526 + MTE-int LTR MaLR 72 364 -1216 3 647 1292 181 18 5 chr11 8246330 8246552 -113597304 + URR1B DNA MER1_type 1 225 0 3 647 1017 327 141 76 chr11 8246552 8247021 -113596835 + MTE-int LTR MaLR 365 901 -679 3 647 971 237 23 23 chr11 8247021 8247237 -113596619 + B3 SINE B2 1 216 0 3 647 1017 327 141 76 chr11 8247237 8247836 -113596020 + MTE-int LTR MaLR 902 1536 -44 3 647 263 346 100 73 chr11 8247843 8248173 -113595683 + ORR1E LTR MaLR 21 359 0 3 647 810 276 211 3 chr11 8249331 8249653 -113594203 - MLT1B LTR MaLR 0 390 2 3 647 1111 233 27 46 chr11 8250580 8250914 -113592942 + RMER19C LTR ERVK 45 349 -388 3 647 33056 80 14 2 chr11 8250918 8256110 -113587746 + L1Md_F2 LINE L1 330 5586 -297 3 647 8276 57 16 1 chr11 8256111 8257091 -113586765 + L1Md_F2 LINE L1 5588 6582 0 3 647 1462 184 11 115 chr11 8257152 8257501 -113586355 + RMER19C LTR ERVK 299 611 0 3 648 295 321 0 0 chr11 8258091 8258175 -113585681 - ID_B1 SINE B4 -29 195 112 3 648 318 26 0 0 chr11 8259482 8259521 -113584335 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 648 349 314 18 37 chr11 8259604 8259713 -113584143 + PB1D10 SINE Alu 4 110 -7 3 648 220 327 0 0 chr11 8259723 8259775 -113584081 + RSINE1 SINE B4 3 54 -111 3 648 23 0 0 0 chr11 8259832 8259855 -113584001 + AT_rich Low_complexity Low_complexity 1 23 0 3 648 474 285 9 138 chr11 8259858 8260049 -113583807 + B3A SINE B2 2 167 -31 3 648 411 21 0 0 chr11 8260049 8260097 -113583759 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 648 474 285 9 138 chr11 8260097 8260129 -113583727 + B3A SINE B2 168 196 -2 3 648 1577 38 5 26 chr11 8260235 8260424 -113583432 - B2_Mm2 SINE B2 -9 186 2 3 648 2224 47 0 0 chr11 8260435 8260691 -113583165 - L1Md_A LINE L1 -2 6580 6325 3 648 1994 197 35 14 chr11 8261604 8261970 -113581886 - ORR1D1 LTR MaLR 0 374 1 3 648 699 169 104 37 chr11 8261979 8262114 -113581742 + B1_Mur3 SINE Alu 1 144 -5 3 648 1275 233 8 8 chr11 8262136 8262400 -113581456 + Lx5 LINE L1 6787 7050 0 3 648 258 32 0 0 chr11 8262474 8262505 -113581351 + (TTAAA)n Simple_repeat Simple_repeat 5 35 0 3 648 276 153 243 27 chr11 8262936 8263010 -113580846 - B3A SINE B2 -107 91 2 3 648 245 244 89 13 chr11 8263067 8263146 -113580710 - L1M4 LINE L1 -1127 5013 4929 3 648 292 258 152 8 chr11 8263213 8263338 -113580518 - L1M4 LINE L1 -1303 4843 4701 3 648 356 366 53 49 chr11 8263440 8263687 -113580169 - L1M2 LINE L1 -1739 4404 4157 3 648 754 204 130 6 chr11 8264575 8264752 -113579104 + B3 SINE B2 1 199 -17 3 648 573 184 23 26 chr11 8265894 8266028 -113577828 - B1_Mur1 SINE Alu -17 132 1 3 648 599 261 160 43 chr11 8266585 8266841 -113577015 - B4A SINE B4 -6 286 1 3 648 3430 122 33 21 chr11 8266943 8267460 -113576396 - Lx LINE L1 -18 6636 6114 3 648 883 164 15 0 chr11 8267461 8267595 -113576261 + B1_Mur2 SINE Alu 13 148 -1 3 648 7239 90 10 4 chr11 8267597 8268577 -113575279 + L1_Mus3 LINE L1 5651 6636 -2 3 648 1530 55 16 11 chr11 8268586 8268769 -113575087 + B2_Mm2 SINE B2 5 188 -7 3 648 369 266 13 0 chr11 8268778 8268857 -113574999 + ID4_ SINE ID 2 81 -2 3 648 1165 192 20 5 chr11 8269035 8269234 -113574622 - B3 SINE B2 -14 202 1 3 648 225 252 117 71 chr11 8269258 8269412 -113574444 + L1MD LINE L1 4175 4335 -1811 3 648 8451 50 1 2 chr11 8269777 8270754 -113573102 + L1Md_F2 LINE L1 5607 6582 0 3 648 1440 207 155 60 chr11 8271270 8271472 -113572384 - Lx7 LINE L1 0 7696 7420 3 648 411 0 16 33 chr11 8271472 8271533 -113572323 + (CACAC)n Simple_repeat Simple_repeat 1 60 0 3 648 1440 179 59 62 chr11 8271533 8271821 -113572035 - Lx7 LINE L1 -277 7419 7144 3 648 8364 184 33 16 chr11 8271940 8272865 -113570991 + Lx6 LINE L1 5961 6882 -578 3 648 612 40 0 0 chr11 8272865 8272940 -113570916 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 648 8364 184 33 16 chr11 8272940 8273485 -113570371 + Lx6 LINE L1 6883 7455 -5 3 648 2793 219 102 58 chr11 8273547 8274411 -113569445 - RMER19B LTR ERVK 0 902 1 3 648 2440 84 19 12 chr11 8275004 8275329 -113568527 + L1_Mus3 LINE L1 6300 6626 -12 3 648 223 244 94 82 chr11 8275724 8275809 -113568047 - BC1_Mm scRNA scRNA -66 86 1 3 648 527 305 51 119 chr11 8275967 8276261 -113567595 + B4A SINE B4 1 274 -18 3 648 216 313 0 24 chr11 8276307 8276392 -113567464 + GA-rich Low_complexity Low_complexity 2 84 0 3 648 229 344 21 10 chr11 8276425 8276522 -113567334 - MLT1A LTR MaLR -276 98 1 3 648 212 321 58 23 chr11 8276529 8276615 -113567241 + L2b LINE L2 3287 3375 0 3 648 21 0 0 0 chr11 8277157 8277178 -113566678 + AT_rich Low_complexity Low_complexity 1 21 0 3 648 517 334 65 30 chr11 8278001 8278340 -113565516 - ORR1E LTR MaLR -6 353 3 3 648 243 222 0 0 chr11 8278560 8278614 -113565242 - MER57E1 LTR ERV1 0 372 319 3 648 264 222 139 0 chr11 8278676 8278748 -113565108 - B3A SINE B2 -78 120 39 3 648 1459 162 11 19 chr11 8278749 8279014 -113564842 - ORR1C1 LTR MaLR 0 378 116 3 648 629 145 43 0 chr11 8279017 8279134 -113564722 + ORR1D2 LTR MaLR 249 370 0 3 648 288 0 0 0 chr11 8279409 8279441 -113564415 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 648 436 214 143 0 chr11 8279552 8279678 -113564178 - ORR1D2 LTR MaLR -132 238 95 3 648 1726 258 19 42 chr11 8279725 8280206 -113563650 + RMER19C LTR ERVK 142 611 0 3 648 364 228 59 0 chr11 8280206 8280301 -113563555 - ORR1D2 LTR MaLR -269 101 1 3 648 1430 132 18 5 chr11 8280951 8281171 -113562685 - URR1B DNA MER1_type 0 225 3 3 648 1555 259 13 0 chr11 8281318 8281708 -113562148 + MT2A LTR ERVL 29 423 -110 3 648 737 252 175 42 chr11 8281939 8282390 -113561466 + L1MEf LINE L1 530 1040 -5202 3 648 547 336 84 17 chr11 8282508 8282865 -113560991 + L1MEf LINE L1 1194 1574 -4668 3 648 358 227 0 0 chr11 8282898 8282964 -113560892 + B3 SINE B2 1 66 -150 3 648 255 31 0 0 chr11 8283110 8283142 -113560714 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 648 459 92 0 0 chr11 8284049 8284114 -113559742 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 648 30 69 0 0 chr11 8284441 8284499 -113559357 + AT_rich Low_complexity Low_complexity 1 58 0 3 648 6227 32 4 4 chr11 8284552 8285276 -113558580 + L1Md_F2 LINE L1 5857 6580 -2 3 648 2753 210 77 24 chr11 8285296 8286019 -113557837 + Lx6 LINE L1 5511 6273 -1187 3 648 1391 291 69 43 chr11 8286019 8286588 -113557268 + Lx6 LINE L1 6455 7000 -50 3 648 1317 91 238 0 chr11 8286657 8286926 -113556930 - L1_Mus3 LINE L1 -596 5988 5657 3 648 4146 68 26 45 chr11 8286927 8287531 -113556325 + L1_Mus3 LINE L1 6046 6638 0 3 648 405 146 104 0 chr11 8287547 8287643 -113556213 + Lx2B LINE L1 6895 7000 0 3 648 429 293 46 36 chr11 8287661 8287856 -113556000 + L1MD3 LINE L1 7583 7779 -216 3 648 356 318 45 37 chr11 8287939 8288211 -113555645 + L1MEf LINE L1 2320 2600 -3546 3 648 192 77 0 0 chr11 8288277 8288303 -113555553 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 3 648 623 235 101 5 chr11 8288358 8288546 -113555310 + L1MC LINE L1 2800 3005 -3141 3 648 301 298 0 43 chr11 8288653 8288771 -113555085 + ID4 SINE ID 3 113 -39 3 648 262 200 185 7 chr11 8288797 8288943 -113554913 + L1MEf LINE L1 3056 3227 -2919 3 648 316 347 25 0 chr11 8289321 8289442 -113554414 + L1M5 LINE L1 4547 4670 -1476 3 648 198 0 0 0 chr11 8289948 8289970 -113553886 + (A)n Simple_repeat Simple_repeat 1 22 0 3 648 318 26 0 0 chr11 8290566 8290605 -113553251 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 648 255 103 0 0 chr11 8290648 8290687 -113553169 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 648 301 130 25 25 chr11 8290718 8290797 -113553059 + (CAGAGA)n Simple_repeat Simple_repeat 6 84 0 3 648 256 196 18 0 chr11 8290827 8290883 -113552973 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 3 648 23 0 0 0 chr11 8291235 8291258 -113552598 + AT_rich Low_complexity Low_complexity 1 23 0 3 648 3533 173 71 9 chr11 8292252 8292889 -113550967 + RLTR33 LTR ERVK 1 676 -2 3 648 1853 218 172 42 chr11 8294705 8295253 -113548603 + Lx7 LINE L1 6839 7457 -239 3 648 369 0 0 0 chr11 8295263 8295304 -113548552 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 648 332 184 13 0 chr11 8295316 8295392 -113548464 + Lx7 LINE L1 7610 7686 -10 3 648 513 321 12 30 chr11 8296940 8297107 -113546749 + RSINE1 SINE B4 2 165 0 3 648 520 289 34 11 chr11 8297128 8297303 -113546553 + B3A SINE B2 2 180 -18 3 648 3576 143 159 72 chr11 8298362 8299181 -113544675 - RMER19B LTR ERVK -12 890 1 3 648 1961 211 15 81 chr11 8299350 8299881 -113543975 + RLTR18B LTR ERVK 1 496 -16 3 648 297 128 0 0 chr11 8299884 8299931 -113543925 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 648 408 40 0 0 chr11 8300817 8300867 -113542989 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 648 844 280 28 91 chr11 8300973 8301056 -113542800 - RMER5 LTR ERV1 -96 438 366 3 648 611 211 6 101 chr11 8301056 8301235 -113542621 + RSINE1 SINE B4 4 165 0 3 648 844 280 28 91 chr11 8301235 8301548 -113542308 - RMER5 LTR ERV1 -169 365 67 3 648 240 35 0 0 chr11 8301869 8301898 -113541958 + (ATG)n Simple_repeat Simple_repeat 2 30 0 3 648 189 0 0 0 chr11 8301898 8301919 -113541937 + (CAT)n Simple_repeat Simple_repeat 1 21 0 3 648 513 236 56 46 chr11 8305875 8306022 -113537834 - RMER5 LTR ERV1 0 534 386 3 648 450 0 0 0 chr11 8306022 8306072 -113537784 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 648 513 236 56 46 chr11 8306072 8306119 -113537737 - RMER5 LTR ERV1 -149 385 338 3 648 531 205 17 26 chr11 8306181 8306296 -113537560 + ID_B1 SINE B4 108 221 -3 3 648 21 36 0 0 chr11 8306296 8306324 -113537532 + AT_rich Low_complexity Low_complexity 1 28 0 3 648 618 244 161 31 chr11 8306440 8306694 -113537162 + RMER15 LTR ERVL 39 325 -250 3 648 2053 181 45 101 chr11 8306695 8307210 -113536646 - RLTR18B LTR ERVK -3 509 24 3 648 1058 204 63 5 chr11 8307219 8307441 -113536415 + RMER15 LTR ERVL 327 561 -14 3 648 251 218 124 38 chr11 8309099 8309204 -113534652 + RMER5 LTR ERV1 41 154 -380 4 648 4579 125 25 55 chr11 8309205 8309992 -113533864 + L1VL2 LINE L1 425 1188 -5446 4 648 31783 84 21 11 chr11 8309992 8315135 -113528721 + L1Md_F2 LINE L1 392 5586 -297 4 648 7676 68 3 9 chr11 8315136 8316137 -113527719 + L1Md_F2 LINE L1 5588 6582 0 4 648 24837 136 11 14 chr11 8316137 8317180 -113526676 + L1VL2 LINE L1 1175 2212 -3671 4 648 2518 97 38 67 chr11 8317180 8317601 -113526255 + RLTR9E LTR ERVK 1 409 0 4 648 24837 147 12 17 chr11 8317601 8320927 -113522929 + L1VL2 LINE L1 2213 5522 -361 4 648 5386 112 38 15 chr11 8320938 8321747 -113522109 + Lx LINE L1 5821 6648 -6 4 648 338 326 37 7 chr11 8321748 8321884 -113521972 + RMER5 LTR ERV1 143 282 -252 4 648 513 230 148 30 chr11 8321951 8322188 -113521668 + RLTR10A LTR ERVK 147 411 0 4 648 3515 76 2 14 chr11 8322265 8322747 -113521109 + L1Md_F2 LINE L1 6106 6581 -1 4 648 381 327 42 0 chr11 8322782 8322950 -113520906 + RMER5 LTR ERV1 360 534 0 4 648 510 17 0 0 chr11 8323368 8323427 -113520429 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 648 410 103 29 0 chr11 8323498 8323566 -113520290 + (CATA)n Simple_repeat Simple_repeat 2 71 0 4 648 1208 146 91 19 chr11 8324091 8324301 -113519555 - URR1A DNA MER1_type 0 226 2 4 648 413 319 69 44 chr11 8325787 8326239 -113517617 - L1MDb LINE L1 -3111 3895 3433 4 648 313 270 124 35 chr11 8326318 8326663 -113517193 - L1MDb LINE L1 -3828 3178 2808 4 648 327 244 23 0 chr11 8326722 8326829 -113517027 + B3 SINE B2 1 113 -85 4 648 263 93 23 0 chr11 8327160 8327203 -113516653 + (TCC)n Simple_repeat Simple_repeat 3 46 0 4 648 240 220 118 21 chr11 8327245 8327338 -113516518 - L1MA9 LINE L1 -319 5972 5871 4 648 442 252 120 29 chr11 8327344 8327630 -113516226 - L1MDb LINE L1 -4981 2121 1840 4 648 426 127 0 0 chr11 8327671 8327742 -113516114 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 648 853 295 42 11 chr11 8327750 8328011 -113515845 - B4 SINE B4 -23 269 1 4 648 735 213 189 30 chr11 8328063 8328402 -113515454 - L1MDb LINE L1 -5253 1756 1364 4 648 1719 77 14 0 chr11 8328846 8329068 -113514788 + IAPEY3-int LTR ERVK 6951 7175 -505 4 648 927 67 15 7 chr11 8329070 8329205 -113514651 - IAPEY2_LTR LTR ERVK -221 136 1 4 648 1396 67 39 0 chr11 8330197 8330377 -113513479 - B2_Mm2 SINE B2 -7 188 2 4 648 233 278 137 17 chr11 8330394 8330511 -113513345 - RSINE1 SINE B4 -29 136 6 4 648 928 179 194 6 chr11 8330677 8330857 -113512999 - B3 SINE B2 -1 215 2 4 648 347 267 0 33 chr11 8330895 8331015 -113512841 - PB1D10 SINE Alu -1 116 1 4 648 462 36 0 0 chr11 8331199 8331255 -113512601 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 648 396 317 93 70 chr11 8331303 8331561 -113512295 + B4 SINE B4 13 276 -16 4 648 378 0 0 0 chr11 8332848 8332890 -113510966 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 648 22 0 0 0 chr11 8333779 8333801 -113510055 + AT_rich Low_complexity Low_complexity 1 22 0 4 648 199 289 58 72 chr11 8336331 8336469 -113507387 - MIRb SINE MIR -94 174 39 4 648 830 263 78 41 chr11 8336818 8337088 -113506768 + B4A SINE B4 1 280 -12 4 648 315 0 0 0 chr11 8338579 8338614 -113505242 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 648 1123 269 166 13 chr11 8340202 8340672 -113503184 + Lx8 LINE L1 6930 7471 -2 4 648 509 110 12 0 chr11 8341035 8341117 -113502739 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 648 1246 67 0 22 chr11 8341117 8341301 -113502555 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 648 1451 283 30 74 chr11 8342021 8342381 -113501475 + L1MC1 LINE L1 5433 5780 -553 4 648 851 268 60 32 chr11 8342381 8342662 -113501194 + B4A SINE B4 2 290 -2 4 648 1451 283 30 74 chr11 8342662 8343029 -113500827 + L1MC1 LINE L1 5781 6128 -205 4 648 409 318 0 19 chr11 8343058 8343212 -113500644 + Lx9 LINE L1 7317 7467 -177 4 648 184 59 29 29 chr11 8343250 8343285 -113500571 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 4 648 21 0 0 0 chr11 8343309 8343330 -113500526 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 24 0 0 0 chr11 8344305 8344329 -113499527 + AT_rich Low_complexity Low_complexity 1 24 0 4 648 796 233 79 12 chr11 8344510 8344675 -113499181 - B3 SINE B2 -40 176 1 4 648 23 33 0 0 chr11 8345754 8345784 -113498072 + AT_rich Low_complexity Low_complexity 1 30 0 4 648 225 0 0 0 chr11 8345841 8345866 -113497990 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 648 737 201 24 36 chr11 8346740 8346905 -113496951 + B3 SINE B2 54 216 0 4 648 648 312 169 29 chr11 8351662 8351900 -113491956 + MER44B DNA MER2_type 38 297 -253 4 648 836 226 85 0 chr11 8351900 8352099 -113491757 + B3 SINE B2 1 216 0 4 648 648 312 169 29 chr11 8352099 8352309 -113491547 + MER44B DNA MER2_type 298 549 -1 4 648 745 191 7 47 chr11 8352529 8352677 -113491179 - B1_Mur3 SINE Alu -7 142 1 4 648 499 311 154 56 chr11 8354089 8354447 -113489409 + L1MEg LINE L1 568 960 -5124 4 648 344 333 94 17 chr11 8354490 8354670 -113489186 + L1MEg LINE L1 1046 1239 -4845 4 648 898 113 7 13 chr11 8354689 8354841 -113489015 + (GGAAA)n Simple_repeat Simple_repeat 5 155 0 4 648 284 444 0 0 chr11 8354843 8354951 -113488905 + G-rich Low_complexity Low_complexity 2 109 0 4 648 764 74 0 9 chr11 8354952 8355061 -113488795 + (GGAAA)n Simple_repeat Simple_repeat 3 110 0 4 648 21 0 0 0 chr11 8355309 8355330 -113488526 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 725 268 103 35 chr11 8355732 8355964 -113487892 - ORR1E LTR MaLR -110 249 2 4 648 254 247 11 0 chr11 8356135 8356228 -113487628 + (TGGA)n Simple_repeat Simple_repeat 4 97 0 4 648 392 219 8 0 chr11 8358345 8358468 -113485388 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 4 648 388 321 45 0 chr11 8359106 8359240 -113484616 - B1F SINE Alu -9 140 1 4 648 640 286 50 17 chr11 8359900 8360202 -113483654 - L1MB3 LINE L1 -69 6114 5803 4 648 207 0 0 0 chr11 8361069 8361092 -113482764 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 648 621 243 33 50 chr11 8361864 8362046 -113481810 - MLT1B LTR MaLR -188 202 24 4 648 1143 181 17 39 chr11 8362170 8362400 -113481456 - URR1B DNA MER1_type 0 225 1 4 648 315 49 0 0 chr11 8365265 8365306 -113478550 + (T)n Simple_repeat Simple_repeat 1 41 0 4 648 1209 75 0 0 chr11 8365306 8365453 -113478403 - B1_Mus2 SINE Alu 0 147 1 4 648 201 74 0 0 chr11 8365985 8366012 -113477844 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 4 648 308 136 0 33 chr11 8366012 8366073 -113477783 + CT-rich Low_complexity Low_complexity 2 60 0 4 648 255 320 38 38 chr11 8366859 8366992 -113476864 - MIRb SINE MIR -20 248 116 4 648 239 257 100 0 chr11 8371235 8371305 -113472551 + MER2 DNA MER2_type 74 150 -195 4 648 186 43 0 0 chr11 8373087 8373110 -113470746 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 4 648 344 148 0 0 chr11 8373111 8373172 -113470684 - Lx9 LINE L1 -9 7635 7575 4 648 1074 159 70 0 chr11 8373182 8373383 -113470473 - B3 SINE B2 0 216 2 4 648 314 246 110 0 chr11 8373832 8373950 -113469906 + L1MB5 LINE L1 6044 6174 0 4 648 597 243 15 7 chr11 8374554 8374691 -113469165 - B3 SINE B2 -78 138 1 4 648 4901 47 0 2 chr11 8374722 8375347 -113468509 + L1Md_F2 LINE L1 4962 5585 -298 4 648 8583 30 0 5 chr11 8375348 8376337 -113467519 + L1Md_F2 LINE L1 5587 6570 -12 4 648 2216 212 11 14 chr11 8376659 8377099 -113466757 + Lx5 LINE L1 6612 7050 0 4 648 190 318 70 12 chr11 8379177 8379263 -113464593 - MIRb SINE MIR -78 190 100 4 648 257 323 11 21 chr11 8380436 8380531 -113463325 + B4A SINE B4 1 94 -198 4 648 1659 213 104 17 chr11 8381013 8381482 -113462374 - Lx9 LINE L1 -1 7643 7134 4 648 237 260 63 25 chr11 8384672 8384751 -113459105 - Charlie1 DNA MER1_type -2596 185 104 4 648 582 289 162 6 chr11 8385609 8385954 -113457902 + L1MB5 LINE L1 5582 5980 -194 4 648 349 281 16 107 chr11 8387512 8387699 -113456157 + HAL1-2a_MD LINE L1 2333 2502 -522 4 649 1000 219 4 49 chr11 8389040 8389266 -113454590 + B3 SINE B2 1 216 0 4 649 31 26 0 0 chr11 8389266 8389304 -113454552 + AT_rich Low_complexity Low_complexity 1 38 0 4 649 320 288 55 45 chr11 8391664 8391815 -113452041 - MIRc SINE MIR -96 166 19 4 649 322 282 20 0 chr11 8393561 8393662 -113450194 - ID4_ SINE ID -48 104 1 4 649 369 0 0 0 chr11 8393690 8393731 -113450125 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 649 297 0 0 0 chr11 8395949 8395982 -113447874 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 649 311 44 22 0 chr11 8396312 8396357 -113447499 + (TTG)n Simple_repeat Simple_repeat 2 47 0 4 649 782 150 70 8 chr11 8396357 8396485 -113447371 - B1_Mus1 SINE Alu -9 139 4 4 649 244 311 27 0 chr11 8399203 8399277 -113444579 - ID4_ SINE ID -6 77 2 4 649 340 266 130 23 chr11 8399284 8399415 -113444441 - B1F SINE Alu -3 146 2 4 649 500 218 135 60 chr11 8399527 8399727 -113444129 + B3 SINE B2 1 215 -1 4 649 375 23 0 0 chr11 8400113 8400157 -113443699 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 649 467 269 7 56 chr11 8400608 8400750 -113443106 + B3 SINE B2 72 206 -10 4 649 213 154 0 0 chr11 8400750 8400789 -113443067 + G-rich Low_complexity Low_complexity 5 43 0 4 649 220 280 13 13 chr11 8401699 8401775 -113442081 + CT-rich Low_complexity Low_complexity 3 78 0 4 649 258 278 28 0 chr11 8401840 8401912 -113441944 + MIR SINE MIR 65 138 -124 4 649 186 43 0 0 chr11 8404725 8404748 -113439108 + (A)n Simple_repeat Simple_repeat 1 23 0 4 649 408 293 197 9 chr11 8405572 8405892 -113437964 + L1MB5 LINE L1 5693 6072 -102 4 649 240 35 0 0 chr11 8407411 8407440 -113436416 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 4 649 458 308 52 71 chr11 8410908 8410939 -113432917 + ORR1E LTR MaLR 95 120 -239 4 649 739 53 9 18 chr11 8410939 8411053 -113432803 + (TGGA)n Simple_repeat Simple_repeat 2 114 0 4 649 458 308 52 71 chr11 8411053 8411290 -113432566 + ORR1E LTR MaLR 121 358 -1 4 649 611 288 131 39 chr11 8412494 8412776 -113431080 + MER2B DNA MER2_type 3 310 -26 4 649 201 74 0 0 chr11 8413883 8413910 -113429946 + (T)n Simple_repeat Simple_repeat 1 27 0 4 649 710 261 156 32 chr11 8415577 8415884 -113427972 + MLT1A0 LTR MaLR 1 390 0 5 649 267 312 26 0 chr11 8417368 8417445 -113426411 + RSINE1 SINE B4 49 127 -38 5 649 360 0 0 0 chr11 8417445 8417485 -113426371 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 649 231 36 0 0 chr11 8417539 8417567 -113426289 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 649 421 200 24 0 chr11 8417567 8417652 -113426204 - B1_Mus2 SINE Alu -1 146 60 5 649 217 286 79 0 chr11 8418467 8418530 -113425326 + PB1D10 SINE Alu 27 94 -23 5 649 453 110 0 0 chr11 8418962 8419035 -113424821 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 649 384 22 0 0 chr11 8421715 8421760 -113422096 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 649 243 0 0 0 chr11 8422358 8422385 -113421471 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 649 642 318 40 14 chr11 8422501 8422724 -113421132 + MER2 DNA MER2_type 99 327 -18 5 649 206 32 32 0 chr11 8423411 8423442 -113420414 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 5 649 509 311 65 65 chr11 8425150 8425273 -113418583 + MLT1B LTR MaLR 49 180 -210 5 649 1230 49 0 0 chr11 8425273 8425416 -113418440 + B1_Mus1 SINE Alu 2 144 -4 5 649 509 311 65 65 chr11 8425416 8425601 -113418255 + MLT1B LTR MaLR 181 356 -34 5 649 491 329 90 0 chr11 8426594 8426816 -113417040 + MLT1A0 LTR MaLR 48 289 -76 5 649 3095 200 100 5 chr11 8427541 8428319 -113415537 + MYSERV-int LTR ERVK 5385 6236 -314 5 649 1425 174 25 0 chr11 8428323 8428598 -113415258 + RLTR11A2 LTR ERVK 246 527 0 5 649 243 301 8 34 chr11 8429844 8429961 -113413895 + GA-rich Low_complexity Low_complexity 2 115 0 5 649 204 67 0 0 chr11 8432731 8432761 -113411095 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 649 934 18 0 9 chr11 8432761 8432874 -113410982 - B1_Mm SINE Alu -8 139 28 5 649 496 12 62 0 chr11 8433045 8433126 -113410730 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 649 1111 58 0 42 chr11 8434476 8434620 -113409236 - B1_Mus1 SINE Alu -10 138 1 5 649 357 290 65 0 chr11 8434788 8434895 -113408961 + PB1D10 SINE Alu 3 116 -1 5 649 705 43 0 0 chr11 8435181 8435274 -113408582 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 649 703 149 154 14 chr11 8435404 8435547 -113408309 + B4 SINE B4 110 272 -20 5 649 350 324 85 9 chr11 8436259 8436365 -113407491 + MER2B DNA MER2_type 207 320 -16 5 649 617 190 26 0 chr11 8438726 8438842 -113405014 + PB1D9 SINE Alu 1 119 -1 5 649 492 18 0 0 chr11 8439307 8439364 -113404492 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 649 257 351 50 50 chr11 8441900 8442059 -113401797 + Cheshire DNA MER1_type 1 159 -2261 5 649 1440 249 164 42 chr11 8442689 8443041 -113400815 + L1M2 LINE L1 2558 2927 -3216 5 649 1410 81 5 0 chr11 8443041 8443226 -113400630 + B2_Mm1a SINE B2 1 186 -7 5 649 1440 249 164 42 chr11 8443226 8443243 -113400613 + L1M2 LINE L1 2928 2936 -3207 5 649 1329 177 0 0 chr11 8443243 8443452 -113400404 + B3 SINE B2 2 210 -6 5 649 1440 249 164 42 chr11 8443452 8443708 -113400148 + L1M2 LINE L1 2937 3206 -2937 5 649 474 65 0 0 chr11 8443708 8443770 -113400086 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 5 649 1440 249 164 42 chr11 8443770 8444112 -113399744 + L1M2 LINE L1 3207 3644 -2499 5 649 201 147 0 0 chr11 8445661 8445695 -113398161 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 649 230 0 0 32 chr11 8446208 8446239 -113397617 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 649 626 286 30 18 chr11 8446825 8446989 -113396867 - B3A SINE B2 -28 170 5 5 649 369 0 0 0 chr11 8447459 8447500 -113396356 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 5 649 191 167 62 0 chr11 8448354 8448402 -113395454 + L3 LINE CR1 2288 2338 -2151 5 649 279 0 0 0 chr11 8451022 8451053 -113392803 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 649 547 299 33 22 chr11 8451470 8451651 -113392205 + B3A SINE B2 1 183 -15 5 649 186 71 0 0 chr11 8451769 8451797 -113392059 + (CAGAG)n Simple_repeat Simple_repeat 4 31 0 5 649 330 250 147 0 chr11 8451816 8451932 -113391924 - Tigger5 DNA MER2_type -2261 145 13 5 649 209 108 0 26 chr11 8452052 8452090 -113391766 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 5 649 913 163 88 39 chr11 8453542 8453746 -113390110 + B3 SINE B2 3 216 0 5 649 222 62 0 0 chr11 8453948 8453980 -113389876 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 649 300 246 123 0 chr11 8454085 8454199 -113389657 + B1_Mus2 SINE Alu 1 128 -19 5 649 225 294 0 2 chr11 8455517 8455582 -113388274 + MIR SINE MIR 87 157 -119 5 649 215 320 70 63 chr11 8456035 8456278 -113387578 + L2a LINE L2 3003 3239 -136 5 649 393 22 0 0 chr11 8456295 8456341 -113387515 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 5 649 241 207 30 121 chr11 8456403 8456469 -113387387 - tRNA-Ala-GCA tRNA tRNA -11 64 5 5 649 278 304 109 86 chr11 8457400 8457620 -113386236 + MIRb SINE MIR 33 257 -11 5 649 899 268 92 0 chr11 8459803 8460064 -113383792 + B4A SINE B4 2 286 -6 5 649 255 253 84 48 chr11 8460693 8460776 -113383080 - ORR1E LTR MaLR -226 133 48 5 649 252 0 0 0 chr11 8462392 8462420 -113381436 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 649 472 264 167 6 chr11 8462569 8462725 -113381131 - B3A SINE B2 -16 182 2 5 649 368 194 45 0 chr11 8462730 8462797 -113381059 - B1F SINE Alu -1 148 79 5 649 358 274 52 92 chr11 8463360 8463533 -113380323 + MT2B2 LTR ERVL 99 264 -320 5 649 488 238 70 16 chr11 8463429 8463536 -113380320 + ID_B1 SINE B4 90 195 -29 5 649 396 0 0 0 chr11 8463536 8463580 -113380276 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 649 488 238 70 16 chr11 8463580 8463600 -113380256 + ID_B1 SINE B4 196 223 -1 5 649 204 320 0 0 chr11 8465475 8465550 -113378306 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 649 933 258 35 50 chr11 8465596 8465878 -113377978 - B4 SINE B4 -13 279 2 5 649 908 194 15 17 chr11 8466317 8466499 -113377357 + B3 SINE B2 2 186 -9 5 649 1438 273 172 62 chr11 8467807 8468636 -113375220 + Lx8 LINE L1 6382 7301 -172 5 649 305 240 10 0 chr11 8468645 8468741 -113375115 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 5 649 333 328 17 8 chr11 8470364 8470481 -113373375 - MLT1C LTR MaLR -1 466 349 5 649 221 301 39 10 chr11 8472576 8472680 -113371176 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 649 565 232 0 39 chr11 8473728 8473858 -113369998 - B1_Mm SINE Alu 0 147 23 5 649 422 219 191 0 chr11 8474402 8474507 -113369349 + PB1 SINE Alu 1 125 -2 5 649 261 296 0 0 chr11 8474539 8474593 -113369263 + ID4_ SINE ID 12 65 -18 5 649 363 60 0 0 chr11 8474610 8474660 -113369196 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 649 229 183 48 32 chr11 8477076 8477138 -113366718 + (CAGAGA)n Simple_repeat Simple_repeat 6 68 0 5 649 1077 203 11 0 chr11 8477479 8477666 -113366190 - B3 SINE B2 -27 189 1 5 649 655 144 62 31 chr11 8478814 8478947 -113364909 - B1_Mm SINE Alu 0 149 16 5 649 780 295 48 40 chr11 8480506 8480902 -113362954 + L1MC2 LINE L1 5786 6184 -160 5 649 494 226 81 0 chr11 8481079 8481203 -113362653 + B1_Mur1 SINE Alu 6 139 -10 5 649 426 20 0 0 chr11 8481206 8481257 -113362599 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 649 212 280 0 0 chr11 8483104 8483154 -113360702 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 5 649 557 326 94 9 chr11 8484655 8484878 -113358978 - MLT1B LTR MaLR -131 259 18 5 649 632 265 0 13 chr11 8486323 8486472 -113357384 + B1_Mur1 SINE Alu 3 149 0 5 649 968 222 66 0 chr11 8486619 8486817 -113357039 + B3 SINE B2 6 216 0 5 649 220 196 0 21 chr11 8486926 8486973 -113356883 + CT-rich Low_complexity Low_complexity 2 47 0 5 649 323 250 62 42 chr11 8486993 8487089 -113356767 - B1F1 SINE Alu -49 100 3 5 649 694 239 49 29 chr11 8488352 8488547 -113355309 + B3A SINE B2 12 211 -5 5 649 1048 66 73 7 chr11 8488573 8488710 -113355146 + B1_Mus2 SINE Alu 2 147 0 5 649 1217 85 0 133 chr11 8488722 8488940 -113354916 + B2_Mm2 SINE B2 2 190 -5 5 649 291 85 0 0 chr11 8489846 8489893 -113353963 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 649 1365 72 0 22 chr11 8490205 8490390 -113353466 + B2_Mm2 SINE B2 1 181 -14 5 649 1316 94 38 16 chr11 8490809 8490993 -113352863 + B2_Mm2 SINE B2 1 188 -7 5 649 463 297 43 21 chr11 8493648 8493789 -113350067 + B1F1 SINE Alu 1 144 -5 5 649 510 300 71 39 chr11 8494208 8494539 -113349317 + L1MC1 LINE L1 5753 6108 -1677 5 649 281 307 38 38 chr11 8494544 8494649 -113349207 + MTEa LTR MaLR 2 106 -253 5 649 1125 159 11 0 chr11 8494661 8494850 -113349006 + URR1A DNA MER1_type 36 226 0 5 649 402 297 42 112 chr11 8494850 8495135 -113348721 + MTEa LTR MaLR 98 372 -7 5 649 381 222 70 10 chr11 8495144 8495244 -113348612 + L1MC1 LINE L1 6110 6215 -118 5 649 963 53 122 0 chr11 8496588 8496719 -113347137 + B1_Mm SINE Alu 1 147 0 5 649 559 297 102 49 chr11 8497483 8497788 -113346068 - MLT1A0 LTR MaLR -44 321 1 5 649 450 36 0 0 chr11 8498289 8498345 -113345511 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 649 312 76 14 43 chr11 8498553 8498567 -113345289 + (TAAAAA)n Simple_repeat Simple_repeat 1 15 0 5 649 1197 55 0 7 chr11 8498567 8498714 -113345142 + B1_Mus2 SINE Alu 2 147 0 5 649 312 76 14 43 chr11 8498714 8498768 -113345088 + (TAAAAA)n Simple_repeat Simple_repeat 4 54 0 5 649 276 30 0 0 chr11 8498777 8498810 -113345046 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 649 408 125 0 0 chr11 8498812 8498876 -113344980 + (CAGG)n Simple_repeat Simple_repeat 4 67 0 5 649 707 157 6 25 chr11 8500830 8500993 -113342863 + GA-rich Low_complexity Low_complexity 3 162 0 1 649 412 237 7 15 chr11 8501182 8501319 -113342537 + G-rich Low_complexity Low_complexity 6 141 0 2 649 697 212 165 21 chr11 8502343 8502531 -113341325 + B3 SINE B2 1 215 -1 3 649 467 343 119 32 chr11 8502741 8503018 -113340838 + MLT1F LTR MaLR 206 506 -42 4 649 25 0 0 0 chr11 8503772 8503797 -113340059 + AT_rich Low_complexity Low_complexity 1 25 0 5 649 1087 209 16 0 chr11 8503916 8504103 -113339753 + B3 SINE B2 2 191 -25 6 649 486 246 21 45 chr11 8504143 8504302 -113339554 - PB1D7 SINE Alu -2 147 1 7 649 283 266 238 60 chr11 8504302 8504357 -113339499 - ID_B1 SINE B4 -121 103 19 8 649 25 0 0 0 chr11 8504737 8504762 -113339094 + AT_rich Low_complexity Low_complexity 1 25 0 9 649 1846 216 58 48 chr11 8505319 8505753 -113338103 + RLTR11A2 LTR ERVK 2 448 -79 1 649 1231 61 0 0 chr11 8505753 8505900 -113337956 + B1_Mus2 SINE Alu 1 147 0 1 649 1846 216 58 48 chr11 8505900 8505985 -113337871 + RLTR11A2 LTR ERVK 449 526 -1 1 649 685 317 122 45 chr11 8506272 8506327 -113337529 + Charlie1a DNA MER1_type 228 287 -1168 1 649 734 226 213 0 chr11 8506327 8506491 -113337365 + B3 SINE B2 2 200 -16 1 649 360 0 0 0 chr11 8506491 8506531 -113337325 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 649 685 317 122 45 chr11 8506531 8506943 -113336913 + Charlie1a DNA MER1_type 288 731 -724 1 649 207 133 0 0 chr11 8506976 8507021 -113336835 + (A)n Simple_repeat Simple_repeat 1 45 0 1 649 26 0 0 0 chr11 8507146 8507172 -113336684 + AT_rich Low_complexity Low_complexity 1 26 0 1 649 389 304 51 22 chr11 8508077 8508215 -113335641 + B1F1 SINE Alu 6 147 -2 1 649 493 110 20 0 chr11 8508457 8508557 -113335299 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 1 649 381 43 0 0 chr11 8508995 8509042 -113334814 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 649 30 0 0 0 chr11 8511698 8511728 -113332128 + AT_rich Low_complexity Low_complexity 1 30 0 2 649 1146 85 0 0 chr11 8511728 8511869 -113331987 + B1_Mus2 SINE Alu 1 141 -6 2 649 180 0 0 0 chr11 8511871 8511891 -113331965 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 2 649 1120 82 0 26 chr11 8511898 8512049 -113331807 + B1_Mus1 SINE Alu 1 147 -1 2 649 302 0 26 0 chr11 8512053 8512091 -113331765 + (TTAAA)n Simple_repeat Simple_repeat 2 40 0 2 649 446 224 132 122 chr11 8512212 8512416 -113331440 - MLT1A0 LTR MaLR 0 365 160 2 649 953 102 0 0 chr11 8512672 8512800 -113331056 + B2_Mm2 SINE B2 2 129 -66 2 649 3019 53 45 0 chr11 8513298 8513677 -113330179 + MTA_Mm LTR MaLR 1 396 0 2 649 228 293 40 0 chr11 8513950 8514025 -113329831 + PB1D10 SINE Alu 3 80 -37 2 649 4215 169 79 25 chr11 8514301 8515183 -113328673 + Lx5 LINE L1 6118 7047 -3 2 649 762 200 0 23 chr11 8515302 8515435 -113328421 + B3 SINE B2 1 130 -86 3 649 396 40 0 0 chr11 8516356 8516406 -113327450 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 649 396 0 0 0 chr11 8516600 8516644 -113327212 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 649 1165 50 0 0 chr11 8516884 8517024 -113326832 - B1_Mus1 SINE Alu -7 141 2 3 649 364 305 31 148 chr11 8517043 8517069 -113326787 + B4 SINE B4 76 164 -128 3 649 880 203 0 0 chr11 8517069 8517217 -113326639 + B1_Mur4 SINE Alu 2 149 -1 3 649 364 305 31 148 chr11 8517217 8517239 -113326617 + B4 SINE B4 165 248 -44 3 649 206 95 0 23 chr11 8517245 8517288 -113326568 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 3 649 769 331 117 67 chr11 8518029 8518396 -113325460 + L1MEc LINE L1 281 653 -5747 3 649 1248 148 81 5 chr11 8518396 8518606 -113325250 - URR1A DNA MER1_type 0 226 1 3 649 769 331 117 67 chr11 8518606 8519006 -113324850 + L1MEc LINE L1 654 1078 -5322 3 649 414 0 0 0 chr11 8519006 8519052 -113324804 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 649 769 331 117 67 chr11 8519052 8519209 -113324647 + L1MEc LINE L1 1079 1252 -5148 3 649 556 83 95 0 chr11 8519217 8519301 -113324555 + B2_Mm2 SINE B2 1 92 -103 4 649 306 0 0 0 chr11 8519342 8519376 -113324480 + (T)n Simple_repeat Simple_repeat 1 34 0 4 649 1234 48 0 0 chr11 8519376 8519523 -113324333 - B1_Mus2 SINE Alu 0 147 1 4 649 315 0 0 0 chr11 8519631 8519666 -113324190 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 650 189 245 0 0 chr11 8519698 8519747 -113324109 + GA-rich Low_complexity Low_complexity 2 50 0 4 650 260 271 188 0 chr11 8519765 8519946 -113323910 + L1MEc LINE L1 1294 1508 -4892 3 650 301 192 200 0 chr11 8519934 8520054 -113323802 + Lx7 LINE L1 5754 5897 -1799 4 650 22 35 0 0 chr11 8520327 8520356 -113323500 + AT_rich Low_complexity Low_complexity 1 29 0 4 650 739 100 174 8 chr11 8520360 8520481 -113323375 + B1_Mus1 SINE Alu 2 142 -6 4 650 552 283 72 0 chr11 8520521 8520673 -113323183 + Lx8 LINE L1 6191 6353 -1120 4 650 612 246 53 18 chr11 8520694 8520864 -113322992 + MLT1B LTR MaLR 192 367 -23 4 650 280 330 107 29 chr11 8520870 8521179 -113322677 + L1MEc LINE L1 2728 3060 -3259 3 650 346 317 106 31 chr11 8521344 8521796 -113322060 + L1MC LINE L1 3901 4386 -1760 5 650 325 314 18 71 chr11 8522065 8522233 -113321623 + MER5B DNA MER1_type 19 177 -1 5 650 657 25 0 0 chr11 8523242 8523321 -113320535 + (TTCTC)n Simple_repeat Simple_repeat 4 82 0 5 650 361 260 122 85 chr11 8523554 8523573 -113320283 - CYRA11_Mm Unknown Y-chromosome -210 407 382 5 650 853 186 99 0 chr11 8523573 8523745 -113320111 + URR1A DNA MER1_type 3 191 -35 5 650 275 177 0 16 chr11 8524220 8524283 -113319573 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 650 22 0 0 0 chr11 8524654 8524676 -113319180 + GC_rich Low_complexity Low_complexity 1 22 0 5 650 191 265 69 46 chr11 8526096 8526183 -113317673 + L2c LINE L2 3268 3356 -31 5 650 255 260 0 0 chr11 8526382 8526432 -113317424 + B1F SINE Alu 3 52 -97 5 650 442 0 0 33 chr11 8526478 8526538 -113317318 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 5 650 1066 44 0 81 chr11 8526538 8526687 -113317169 - B1_Mm SINE Alu -9 138 2 6 650 1144 67 170 0 chr11 8527639 8527804 -113316052 - B2_Mm2 SINE B2 0 195 3 6 650 972 162 0 0 chr11 8527919 8528067 -113315789 + B1_Mur4 SINE Alu 3 150 0 6 650 532 178 96 56 chr11 8530315 8530440 -113313416 + B1_Mur2 SINE Alu 14 143 -6 6 650 543 69 0 0 chr11 8530444 8530516 -113313340 + (GGGA)n Simple_repeat Simple_repeat 2 73 0 6 650 847 240 49 5 chr11 8530834 8531039 -113312817 - B3 SINE B2 0 216 3 6 650 1102 216 169 3 chr11 8531434 8531718 -113312138 - RCHARR1 DNA MER1_type -3 971 641 6 650 670 169 8 41 chr11 8531760 8531883 -113311973 - PB1D9 SINE Alu 0 120 2 6 650 280 214 57 0 chr11 8531884 8531954 -113311902 - RCHARR1 DNA MER1_type -436 538 465 6 650 682 259 68 31 chr11 8531963 8532126 -113311730 + B3 SINE B2 19 187 -29 6 650 1373 269 91 24 chr11 8532112 8532576 -113311280 - RCHARR1 DNA MER1_type -475 499 5 6 650 1017 85 43 0 chr11 8532585 8532726 -113311130 + B1_Mus2 SINE Alu 1 147 0 6 650 818 136 161 7 chr11 8532781 8532936 -113310920 + B2_Mm1t SINE B2 1 179 -14 7 650 523 62 310 26 chr11 8532983 8533099 -113310757 + B2_Mm2 SINE B2 47 195 0 7 650 341 224 26 0 chr11 8533105 8533181 -113310675 + B1F1 SINE Alu 67 144 -5 7 650 248 198 442 18 chr11 8533222 8533235 -113310621 + B3 SINE B2 52 203 -13 7 650 287 282 17 99 chr11 8533235 8533324 -113310532 - RMER17A LTR ERVK -251 500 418 7 650 321 26 0 0 chr11 8533324 8533362 -113310494 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 7 650 287 282 17 99 chr11 8533372 8533453 -113310403 - RMER17A LTR ERVK -334 417 335 7 650 838 247 99 75 chr11 8533488 8533688 -113310168 + L1MA6 LINE L1 5726 5945 -355 7 650 1302 102 23 0 chr11 8533688 8533865 -113309991 + B2_Mm2 SINE B2 1 181 -14 7 650 222 37 0 0 chr11 8533865 8533892 -113309964 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 7 650 838 249 97 83 chr11 8533892 8534264 -113309592 + L1MA6 LINE L1 5946 6284 -13 7 650 1013 81 66 0 chr11 8535417 8535553 -113308303 + B1_Mus2 SINE Alu 1 145 -2 7 650 406 169 11 11 chr11 8535632 8535722 -113308134 + GA-rich Low_complexity Low_complexity 2 91 0 8 650 1348 82 60 0 chr11 8536485 8536669 -113307187 + B2_Mm2 SINE B2 1 195 0 8 650 286 252 35 0 chr11 8537843 8537938 -113305918 + L2c LINE L2 3080 3179 -247 8 650 227 250 0 111 chr11 8538511 8538574 -113305282 + ZP3AR Satellite Satellite 38 93 -119 8 650 207 156 0 0 chr11 8540057 8540089 -113303767 + (CG)n Simple_repeat Simple_repeat 1 32 0 8 650 333 115 159 32 chr11 8540089 8540152 -113303704 + HAL1-3A_ME LINE L1 1977 2047 -811 8 650 216 246 116 0 chr11 8540617 8540686 -113303170 - ID4 SINE ID -6 77 1 8 650 442 258 10 0 chr11 8540691 8540788 -113303068 - PB1D10 SINE Alu -7 110 13 8 650 479 232 27 0 chr11 8541250 8541362 -113302494 - B1_Mur2 SINE Alu -2 147 33 8 650 684 118 8 16 chr11 8542772 8542901 -113300955 + (GGGA)n Simple_repeat Simple_repeat 3 130 0 8 650 519 239 92 43 chr11 8543093 8543277 -113300579 + MLT1A1 LTR MaLR 214 406 -2 9 650 621 322 87 46 chr11 8543838 8544180 -113299676 + MLT1A0 LTR MaLR 3 407 -1 9 650 315 0 0 0 chr11 8544866 8544901 -113298955 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 650 402 188 0 0 chr11 8544958 8545022 -113298834 - PB1D9 SINE Alu -12 108 45 9 650 786 236 6 29 chr11 8545238 8545408 -113298448 - MTD LTR MaLR -252 167 2 9 650 3002 226 184 62 chr11 8545409 8546216 -113297640 - MTD-int LTR MaLR 0 1258 385 9 650 1304 101 11 0 chr11 8546216 8546404 -113297452 - B2_Mm1t SINE B2 -2 191 2 9 650 3002 226 184 62 chr11 8546404 8546716 -113297140 - MTD-int LTR MaLR -874 384 2 9 650 2189 202 22 7 chr11 8546717 8547130 -113296726 - MTD LTR MaLR 0 419 1 9 650 499 316 106 34 chr11 8548364 8548593 -113295263 + MLT2D LTR ERVL 26 273 -141 9 650 374 287 35 9 chr11 8548593 8548709 -113295147 + PB1D7 SINE Alu 1 119 -1 9 650 499 316 106 34 chr11 8548709 8548771 -113295085 + MLT2D LTR ERVL 274 338 -76 9 650 485 364 63 14 chr11 8548808 8549031 -113294825 + Tigger5 DNA MER2_type 3 236 -2170 9 650 377 272 39 10 chr11 8549029 8549133 -113294723 + Tigger5 DNA MER2_type 2300 2406 0 9 650 666 304 56 9 chr11 8549996 8550212 -113293644 + B4 SINE B4 1 226 -66 9 650 909 221 79 20 chr11 8550212 8550415 -113293441 + B3 SINE B2 1 215 -1 1 650 578 314 39 66 chr11 8550419 8550598 -113293258 - B3A SINE B2 -6 189 16 1 650 1154 141 48 39 chr11 8550598 8550805 -113293051 - URR1A DNA MER1_type 0 226 18 1 650 336 298 29 9 chr11 8550880 8550985 -113292871 + B1_Mur1 SINE Alu 22 128 -21 1 650 423 0 0 0 chr11 8550987 8551034 -113292822 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 650 303 28 0 0 chr11 8551034 8551069 -113292787 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 650 1238 107 6 0 chr11 8554916 8555074 -113288782 + B2_Mm1a SINE B2 2 160 -33 1 650 378 0 0 0 chr11 8555074 8555116 -113288740 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 650 1238 107 6 0 chr11 8555116 8555134 -113288722 + B2_Mm1a SINE B2 161 178 -15 1 650 1196 123 0 0 chr11 8556260 8556418 -113287438 + B2_Mm2 SINE B2 2 159 -36 1 650 324 0 0 0 chr11 8556418 8556454 -113287402 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 650 1196 123 0 0 chr11 8556454 8556465 -113287391 + B2_Mm2 SINE B2 160 170 -25 1 650 207 0 0 0 chr11 8557078 8557101 -113286755 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 650 441 224 257 38 chr11 8557515 8557752 -113286104 + L1MB3 LINE L1 5815 6103 -80 1 650 296 319 71 105 chr11 8558141 8558379 -113285477 + ORR1E LTR MaLR 77 306 -53 1 650 465 213 60 30 chr11 8559528 8559697 -113284159 + B3 SINE B2 2 172 -23 1 650 463 335 59 0 chr11 8560549 8560701 -113283155 + RSINE1 SINE B4 3 163 -2 1 650 23 33 0 0 chr11 8560754 8560784 -113283072 + AT_rich Low_complexity Low_complexity 1 30 0 1 650 436 261 8 59 chr11 8560975 8561093 -113282763 + B1F SINE Alu 1 112 -37 1 650 1141 83 7 0 chr11 8561404 8561548 -113282308 - B1_Mus1 SINE Alu -2 146 2 1 650 236 275 58 0 chr11 8561614 8561683 -113282173 - ID SINE ID -143 81 9 1 650 312 70 0 0 chr11 8563159 8563202 -113280654 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 650 21 36 0 0 chr11 8564571 8564599 -113279257 + GC_rich Low_complexity Low_complexity 1 28 0 1 650 295 204 75 54 chr11 8567268 8567361 -113276495 - PB1D10 SINE Alu -2 115 21 1 650 988 271 151 81 chr11 8567407 8567504 -113276352 + MLT2B2 LTR ERVL 5 86 -429 1 650 1127 92 0 0 chr11 8567504 8567645 -113276211 - B1_Mus2 SINE Alu -6 141 1 1 650 988 271 151 81 chr11 8567645 8568017 -113275839 + MLT2B2 LTR ERVL 87 507 -8 1 650 783 89 3 29 chr11 8568803 8568935 -113274921 - B1_Mus1 SINE Alu 0 120 1 1 650 421 209 0 110 chr11 8568829 8568947 -113274909 - MT2B LTR ERVL -342 259 155 1 650 258 250 0 106 chr11 8568833 8568994 -113274862 - ORR1B1-int LTR MaLR -762 747 604 1 650 314 302 98 28 chr11 8570859 8571002 -113272854 - RSINE1 SINE B4 -8 157 5 1 650 477 0 0 0 chr11 8571458 8571511 -113272345 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 650 1881 170 112 5 chr11 8571746 8572130 -113271726 + RMER10A LTR ERVL 18 442 0 1 650 1512 73 5 0 chr11 8572684 8572876 -113270980 - B2_Mm1a SINE B2 0 193 1 1 650 269 336 8 23 chr11 8573181 8573309 -113270547 + GA-rich Low_complexity Low_complexity 3 128 0 1 650 287 65 22 0 chr11 8573311 8573357 -113270499 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 650 273 29 0 0 chr11 8573365 8573399 -113270457 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 650 1741 194 84 18 chr11 8573525 8573918 -113269938 + MTD LTR MaLR 1 419 0 1 650 534 269 12 94 chr11 8574341 8574501 -113269355 + B1_Mur1 SINE Alu 2 148 -1 1 650 297 0 0 0 chr11 8575245 8575278 -113268578 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 650 319 267 58 0 chr11 8575518 8575604 -113268252 + PB1D10 SINE Alu 21 111 -6 1 650 354 205 21 147 chr11 8576091 8576184 -113267672 + MLT1B LTR MaLR 8 82 -308 1 650 350 186 246 33 chr11 8576184 8576306 -113267550 - B1F SINE Alu -1 148 1 1 650 354 205 21 147 chr11 8576306 8576355 -113267501 + MLT1B LTR MaLR 83 132 -258 1 650 237 376 45 45 chr11 8576356 8576534 -113267322 - MTD LTR MaLR -2 417 240 1 650 838 289 90 142 chr11 8576498 8576985 -113266871 + MTEa-int LTR MaLR 1095 1556 -24 1 650 357 297 89 0 chr11 8577080 8577181 -113266675 - ID_B1 SINE B4 -112 112 3 1 650 282 304 14 86 chr11 8577181 8577335 -113266521 + MTEa LTR MaLR 1 150 -229 1 650 204 40 0 0 chr11 8577391 8577416 -113266440 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 650 385 248 173 6 chr11 8577583 8577745 -113266111 + MLT1B LTR MaLR 187 375 -15 1 650 181 231 77 0 chr11 8577988 8578040 -113265816 + L3 LINE CR1 3460 3515 -974 1 650 1256 223 74 40 chr11 8579331 8579711 -113264145 - MTD LTR MaLR 0 379 5 1 650 392 248 40 0 chr11 8579721 8579822 -113264034 - BC1_Mm scRNA scRNA -46 106 2 1 650 249 236 18 191 chr11 8580200 8580310 -113263546 - FAM SINE Alu -74 237 147 1 650 302 389 101 0 chr11 8580416 8580555 -113263301 - HAL1-3A_ME LINE L1 -414 2444 2292 1 650 218 292 198 8 chr11 8581630 8581751 -113262105 + MIRc SINE MIR 8 151 -117 1 650 256 226 128 11 chr11 8582295 8582389 -113261467 - Lx9 LINE L1 0 7644 7540 1 650 390 42 0 0 chr11 8582389 8582437 -113261419 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 1 650 760 269 19 5 chr11 8582468 8582681 -113261175 - Lx9 LINE L1 -203 7441 7226 1 650 356 223 83 55 chr11 8583112 8583221 -113260635 - B3A SINE B2 -83 115 4 1 650 258 32 0 0 chr11 8584160 8584191 -113259665 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 650 1140 66 0 0 chr11 8584191 8584328 -113259528 - B1_Mus2 SINE Alu -10 137 1 1 650 1169 157 25 15 chr11 8585055 8585255 -113258601 + URR1A DNA MER1_type 3 204 -22 1 650 508 281 0 48 chr11 8585448 8585594 -113258262 + B1F1 SINE Alu 1 139 -10 1 650 1496 206 47 14 chr11 8585757 8586053 -113257803 + RMER15 LTR ERVL 2 307 -268 1 650 785 313 106 66 chr11 8586760 8587087 -113256769 - MLT2B3 LTR ERVL -6 548 222 1 650 240 86 0 0 chr11 8587087 8587122 -113256734 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 1 650 785 313 106 66 chr11 8587122 8587321 -113256535 - MLT2B3 LTR ERVL -333 221 2 1 650 555 308 111 43 chr11 8587973 8588343 -113255513 + MLT1F1 LTR MaLR 33 427 -142 1 650 376 215 13 0 chr11 8589398 8589477 -113254379 - B1F1 SINE Alu -64 85 6 1 650 1464 201 101 84 chr11 8589854 8590162 -113253694 - MTC LTR MaLR 0 421 109 1 650 1254 54 0 0 chr11 8590162 8590309 -113253547 + B1_Mus1 SINE Alu 2 148 0 1 650 1464 201 101 84 chr11 8590309 8590414 -113253442 - MTC LTR MaLR -313 108 1 1 650 21 0 0 0 chr11 8592235 8592256 -113251600 + AT_rich Low_complexity Low_complexity 1 21 0 1 650 507 281 116 0 chr11 8592277 8592423 -113251433 - RSINE1 SINE B4 0 165 3 1 650 260 203 71 14 chr11 8593323 8593393 -113250463 - L2b LINE L2 -10 3365 3292 1 650 334 242 102 35 chr11 8593759 8593882 -113249974 - B1F SINE Alu -1 148 1 1 650 859 201 6 40 chr11 8594036 8594212 -113249644 - RMER15 LTR ERVL -2 573 404 1 650 2098 117 59 31 chr11 8594198 8594552 -113249304 + RLTR23 LTR ERV1 67 430 0 1 650 1915 158 98 84 chr11 8594552 8594974 -113248882 - RMER15 LTR ERVL -141 434 7 1 650 602 285 77 8 chr11 8595016 8595220 -113248636 + ID_B1 SINE B4 1 214 -78 1 650 589 299 161 17 chr11 8595234 8595656 -113248200 + L1M2 LINE L1 4131 4613 -1530 1 650 642 259 54 99 chr11 8595661 8595884 -113247972 - B4 SINE B4 0 292 80 1 650 417 86 0 0 chr11 8596055 8596113 -113247743 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 650 1084 189 303 35 chr11 8596191 8596616 -113247240 - RLTR20C LTR ERVK -9 542 4 1 650 608 319 41 18 chr11 8596677 8597015 -113246841 + L1M2 LINE L1 4744 5089 -1054 1 650 809 145 8 22 chr11 8597030 8597164 -113246692 - B1_Mur3 SINE Alu 0 149 18 1 650 595 201 25 94 chr11 8597249 8597341 -113246515 + B1_Mur3 SINE Alu 1 93 -56 1 650 1299 157 32 5 chr11 8597341 8597559 -113246297 - URR1B DNA MER1_type 0 225 2 1 650 595 201 25 94 chr11 8597559 8597619 -113246237 + B1_Mur3 SINE Alu 94 143 -6 1 650 192 97 0 0 chr11 8597619 8597650 -113246206 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 1 650 224 138 0 0 chr11 8597764 8597802 -113246054 - B3 SINE B2 -159 39 2 1 650 460 200 103 7 chr11 8597811 8597947 -113245909 - L1M4c LINE L1 -1020 5727 5579 1 650 306 267 147 12 chr11 8597942 8598105 -113245751 - L1M4c LINE L1 -3364 3383 3199 1 650 225 288 0 0 chr11 8598106 8598165 -113245691 + CT-rich Low_complexity Low_complexity 1 59 0 1 650 353 378 67 38 chr11 8598165 8598189 -113245667 - L1M4c LINE L1 -3537 3210 3188 1 650 734 197 21 7 chr11 8598189 8598332 -113245524 - B1F SINE Alu 0 149 5 1 650 353 378 67 38 chr11 8598332 8598653 -113245203 - L1M4c LINE L1 -3560 3187 2855 1 650 270 0 0 0 chr11 8598665 8598695 -113245161 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 650 477 317 8 38 chr11 8598695 8598826 -113245030 - B3A SINE B2 -68 127 1 1 650 799 206 0 14 chr11 8598829 8598977 -113244879 - B1_Mur1 SINE Alu -1 148 3 1 650 1063 263 56 77 chr11 8599061 8599489 -113244367 - MTD LTR MaLR 0 419 1 1 650 308 298 56 53 chr11 8599500 8599822 -113244034 - L1M4c LINE L1 -3976 2773 2451 1 650 359 290 56 0 chr11 8599915 8600022 -113243834 - PB1D10 SINE Alu -1 116 4 1 650 193 75 24 24 chr11 8600121 8600162 -113243694 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 1 650 285 303 38 75 chr11 8600190 8600429 -113243427 - L1M4c LINE L1 -5142 1465 1236 1 650 527 78 13 0 chr11 8600516 8600593 -113243263 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 1 650 1014 58 68 61 chr11 8600618 8600765 -113243091 - B1_Mus1 SINE Alu 0 148 1 1 650 183 80 0 0 chr11 8602767 8602792 -113241064 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 650 4280 48 4 4 chr11 8602931 8603449 -113240407 - L1Md_F2 LINE L1 -1 6581 6064 1 650 679 269 84 5 chr11 8603476 8603678 -113240178 + ID_B1 SINE B4 1 218 -6 1 650 373 260 75 19 chr11 8605600 8605706 -113238150 - PB1D10 SINE Alu -5 112 1 1 650 35 0 0 0 chr11 8606111 8606146 -113237710 + AT_rich Low_complexity Low_complexity 1 35 0 1 650 24 53 0 0 chr11 8607269 8607307 -113236549 + AT_rich Low_complexity Low_complexity 1 38 0 1 650 1321 72 66 11 chr11 8607314 8607497 -113236359 + B2_Mm2 SINE B2 2 194 -1 1 650 819 163 0 43 chr11 8607504 8607645 -113236211 + B1_Mur4 SINE Alu 3 137 -13 1 650 306 0 0 0 chr11 8607660 8607694 -113236162 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 1 650 517 197 123 14 chr11 8607708 8607871 -113235985 + B3 SINE B2 1 187 -6 2 650 258 319 14 0 chr11 8607876 8607948 -113235908 + ID4 SINE ID 2 74 -9 2 650 31 76 0 0 chr11 8607962 8608028 -113235828 + AT_rich Low_complexity Low_complexity 1 66 0 2 650 222 37 0 0 chr11 8608639 8608666 -113235190 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 650 24 0 0 0 chr11 8608666 8608690 -113235166 + AT_rich Low_complexity Low_complexity 1 24 0 2 650 725 280 12 0 chr11 8609364 8609532 -113234324 - B3 SINE B2 -7 209 40 2 650 284 79 0 0 chr11 8609527 8609565 -113234291 - B1_Mus2 SINE Alu -109 38 1 2 650 230 239 45 0 chr11 8609709 8609776 -113234080 + L1MD1 LINE L1 5925 5994 -248 2 650 495 95 0 0 chr11 8610695 8610769 -113233087 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 650 279 0 0 0 chr11 8611059 8611090 -113232766 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 650 315 0 0 0 chr11 8611098 8611133 -113232723 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 650 208 115 37 37 chr11 8611136 8611190 -113232666 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2 650 333 307 101 32 chr11 8611305 8611463 -113232393 - B4A SINE B4 -117 175 7 2 650 563 99 163 11 chr11 8611492 8611584 -113232272 - PB1D9 SINE Alu -11 109 4 2 650 287 306 49 98 chr11 8611598 8611717 -113232139 - B1F SINE Alu -9 140 28 2 650 2139 173 47 8 chr11 8611717 8612118 -113231738 + MTC LTR MaLR 1 417 -4 2 650 4929 180 96 25 chr11 8612123 8613289 -113230567 + MTC-int LTR MaLR 6 1254 -4 2 650 329 127 48 0 chr11 8613852 8613915 -113229941 + C-rich Low_complexity Low_complexity 1 66 0 2 650 273 192 70 10 chr11 8613920 8614020 -113229836 - Lx4B LINE L1 -16 7042 6937 2 650 270 0 0 0 chr11 8614224 8614254 -113229602 + (T)n Simple_repeat Simple_repeat 1 30 0 2 650 784 170 50 0 chr11 8615489 8615630 -113228226 + B1_Mur2 SINE Alu 1 148 -1 2 650 405 0 0 0 chr11 8615848 8615893 -113227963 + (CAAG)n Simple_repeat Simple_repeat 1 45 0 2 650 25 0 0 0 chr11 8616587 8616612 -113227244 + AT_rich Low_complexity Low_complexity 1 25 0 2 650 706 192 8 0 chr11 8618393 8618518 -113225338 - B1_Mm SINE Alu -18 129 4 2 650 1200 76 0 23 chr11 8618674 8618849 -113225007 + B2_Mm2 SINE B2 1 171 -24 2 650 827 214 74 46 chr11 8619040 8619365 -113224491 - BGLII_B LTR ERVK -55 506 189 2 650 2442 146 131 63 chr11 8619363 8619857 -113223999 + RLTR17 LTR ERVK 99 632 -60 2 650 195 69 0 0 chr11 8619857 8619886 -113223970 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 650 222 37 0 0 chr11 8619887 8619914 -113223942 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 2 650 2442 146 131 63 chr11 8619914 8619973 -113223883 + RLTR17 LTR ERVK 633 689 -3 2 650 953 147 65 23 chr11 8619973 8620189 -113223667 - BGLII_B LTR ERVK -137 304 80 2 650 501 178 29 10 chr11 8620296 8620398 -113223458 + RLTR20C LTR ERVK 220 323 -211 2 650 180 0 0 0 chr11 8620398 8620418 -113223438 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 650 554 129 0 47 chr11 8620426 8620532 -113223324 - B1_Mus1 SINE Alu -47 101 1 2 650 924 163 12 41 chr11 8620532 8620735 -113223121 + RLTR20C LTR ERVK 315 574 -4 2 650 569 73 0 0 chr11 8620753 8620835 -113223021 + L1_Mus2 LINE L1 6485 6566 0 2 650 1004 247 16 16 chr11 8620846 8621093 -113222763 - MTD LTR MaLR -172 247 1 2 650 222 105 0 0 chr11 8621384 8621422 -113222434 + (T)n Simple_repeat Simple_repeat 1 38 0 2 650 1119 215 5 0 chr11 8624812 8625017 -113218839 - B3 SINE B2 -10 206 1 2 650 594 290 57 12 chr11 8625034 8625282 -113218574 + Charlie1a DNA MER1_type 920 1178 -277 2 650 1566 269 56 25 chr11 8625364 8625886 -113217970 + Lx8 LINE L1 6935 7472 -1 2 650 217 258 61 0 chr11 8625974 8626040 -113217816 + B3 SINE B2 5 74 -142 2 650 309 276 84 7 chr11 8626349 8626491 -113217365 - RMER20B LTR ERVK 0 516 364 2 650 3599 8 2 2 chr11 8626615 8627011 -113216845 - MTA_Mm LTR MaLR 0 396 1 2 650 371 256 22 94 chr11 8627100 8627238 -113216618 - RMER20B LTR ERVK -499 128 1 2 650 1450 188 4 22 chr11 8627308 8627585 -113216271 - MTD LTR MaLR -132 287 16 2 650 441 54 0 0 chr11 8627594 8627650 -113216206 + (GAAA)n Simple_repeat Simple_repeat 4 59 0 2 650 720 244 5 71 chr11 8628623 8628681 -113215175 - B3 SINE B2 -18 198 152 2 650 447 92 0 0 chr11 8628681 8628746 -113215110 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 650 720 244 5 71 chr11 8628746 8628899 -113214957 - B3 SINE B2 -65 151 1 2 650 29487 87 39 6 chr11 8628938 8631158 -113212698 - L1_Mus1 LINE L1 0 6567 4279 2 650 1133 89 0 0 chr11 8631158 8631304 -113212552 - B1_Mm SINE Alu -1 146 1 2 650 29487 105 5 10 chr11 8631304 8633279 -113210577 - L1_Mus1 LINE L1 -1605 4278 2311 2 650 1725 21 0 0 chr11 8633279 8633471 -113210385 + B2_Mm1a SINE B2 2 193 0 2 650 29487 105 5 10 chr11 8633471 8634168 -113209688 - L1_Mus1 LINE L1 -3573 2310 1616 2 650 2010 116 12 51 chr11 8634168 8634503 -113209353 - RLTRETN_Mm LTR ERVK 0 322 1 2 650 35215 74 13 32 chr11 8634503 8634785 -113209071 - MMETn-int LTR ERVK 0 4844 4588 2 650 1414 45 51 0 chr11 8634785 8634961 -113208895 - B2_Mm1a SINE B2 -8 185 1 2 650 35215 74 13 32 chr11 8634961 8639612 -113204244 - MMETn-int LTR ERVK -257 4587 2 2 650 2032 110 9 51 chr11 8639613 8639949 -113203907 - RLTRETN_Mm LTR ERVK 0 322 1 2 650 2767 179 26 128 chr11 8639949 8641441 -113202415 - L1_Mus1 LINE L1 -2293 1621 261 2 650 10981 53 1 0 chr11 8641492 8642828 -113201028 + L1Md_F2 LINE L1 4250 5586 -297 2 650 8343 43 1 7 chr11 8642828 8643830 -113200026 + L1Md_F2 LINE L1 5587 6582 0 2 650 242 362 0 0 chr11 8643851 8643920 -113199936 - ID4_ SINE ID -3 80 12 2 650 306 0 0 0 chr11 8644511 8644545 -113199311 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 650 450 0 0 0 chr11 8644545 8644594 -113199262 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 650 579 122 0 0 chr11 8646048 8646138 -113197718 + (TCCCC)n Simple_repeat Simple_repeat 4 93 0 2 650 511 197 6 6 chr11 8646463 8646642 -113197214 + (CCAA)n Simple_repeat Simple_repeat 2 180 0 2 650 227 192 19 0 chr11 8646654 8646706 -113197150 + (CCCA)n Simple_repeat Simple_repeat 2 54 0 2 650 23 54 0 0 chr11 8646844 8646881 -113196975 + AT_rich Low_complexity Low_complexity 1 37 0 2 650 315 344 78 0 chr11 8647257 8647385 -113196471 - RSINE1 SINE B4 -24 141 4 2 650 471 211 37 0 chr11 8647459 8647568 -113196288 + B1_Mur2 SINE Alu 37 149 0 2 650 1209 62 0 0 chr11 8647645 8647791 -113196065 + B1_Mus2 SINE Alu 2 147 0 2 650 364 116 17 35 chr11 8647793 8647909 -113195947 + A-rich Low_complexity Low_complexity 3 116 0 2 650 180 158 0 0 chr11 8648252 8648290 -113195566 + CT-rich Low_complexity Low_complexity 2 39 0 2 650 546 246 9 17 chr11 8648327 8648443 -113195413 - PB1D7 SINE Alu -5 115 1 2 650 443 75 0 29 chr11 8648670 8648683 -113195173 + (TTCC)n Simple_repeat Simple_repeat 1 13 0 2 650 207 0 0 0 chr11 8648683 8648706 -113195150 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2 650 443 75 0 29 chr11 8648706 8648761 -113195095 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2 650 721 199 7 0 chr11 8648772 8648913 -113194943 - B1_Mus1 SINE Alu -1 147 6 2 650 443 0 0 56 chr11 8648944 8649015 -113194841 + (TTCTC)n Simple_repeat Simple_repeat 5 71 0 2 650 306 0 0 0 chr11 8649033 8649067 -113194789 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2 650 1234 50 0 0 chr11 8649067 8649228 -113194628 - B2_Mm2 SINE B2 -34 161 1 2 650 1279 53 4 4 chr11 8649694 8649924 -113193932 + (TTTC)n Simple_repeat Simple_repeat 1 230 0 2 650 2140 66 0 0 chr11 8649965 8650251 -113193605 - ORR1A1 LTR MaLR 0 346 61 2 81 601 248 21 7 chr11 8650744 8650886 -113192970 + B1_Mur1 SINE Alu 6 149 0 2 651 729 34 0 0 chr11 8650923 8651011 -113192845 + (GAA)n Simple_repeat Simple_repeat 2 89 0 2 651 306 216 0 0 chr11 8651034 8651159 -113192697 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 651 244 261 0 0 chr11 8651189 8651254 -113192602 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 2 651 420 67 0 0 chr11 8651264 8651324 -113192532 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 651 368 348 66 27 chr11 8651610 8651793 -113192063 + MTE-int LTR MaLR 1 190 -1390 2 651 565 192 146 0 chr11 8651925 8652055 -113191801 + B1F SINE Alu 1 149 0 2 651 8329 64 11 3 chr11 8652439 8653865 -113189991 + L1_Mus1 LINE L1 5127 6565 -2 2 651 950 151 63 138 chr11 8653899 8654153 -113189703 - RLTR9C LTR ERVK 0 393 159 2 651 432 86 0 67 chr11 8654191 8654266 -113189590 - ETnERV2-int LTR ERVK -6 7400 7331 2 651 1152 189 32 27 chr11 8654483 8654840 -113189016 - ETnERV2-int LTR ERVK -984 6422 6127 2 651 1295 124 84 4 chr11 8654865 8655091 -113188765 - RLTR9C LTR ERVK -149 244 1 2 651 363 89 0 0 chr11 8655091 8655147 -113188709 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 651 243 270 60 0 chr11 8655153 8655253 -113188603 + L1MA5A LINE L1 5290 5395 -785 2 651 255 83 0 77 chr11 8655271 8655308 -113188548 + polypyrimidine Low_complexity Low_complexity 29 63 0 2 651 1201 68 0 0 chr11 8655308 8655455 -113188401 - B1_Mm SINE Alu 0 147 1 2 651 7056 20 2 0 chr11 8655455 8656277 -113187579 - L1Md_F2 LINE L1 0 6582 5786 2 651 3221 189 34 17 chr11 8656425 8656881 -113186975 - Lx4B LINE L1 -1 7057 6601 2 651 1610 231 41 62 chr11 8656881 8657397 -113186459 + RLTR16 LTR ERVK 1 505 0 2 651 3221 189 34 17 chr11 8657397 8657590 -113186266 - Lx4B LINE L1 -458 6600 6397 2 651 2729 150 80 8 chr11 8657590 8658093 -113185763 + Lx4B LINE L1 5874 6412 -646 2 651 867 266 103 59 chr11 8658067 8658474 -113185382 + L1MA5A LINE L1 5364 5788 -503 2 651 4190 155 61 21 chr11 8658474 8659341 -113184515 + RLTR13D6 LTR ERVK 1 902 0 2 651 231 114 0 0 chr11 8659341 8659376 -113184480 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 651 234 239 73 83 chr11 8659445 8659541 -113184315 + L1MA5A LINE L1 5848 5942 -355 2 651 1225 215 160 30 chr11 8659544 8659875 -113183981 + ORR1D1 LTR MaLR 1 374 0 2 651 379 228 238 12 chr11 8659952 8660112 -113183744 + ORR1D2 LTR MaLR 173 368 -2 2 651 279 0 0 0 chr11 8660227 8660258 -113183598 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 651 1192 56 0 0 chr11 8660260 8660402 -113183454 - B1_Mus2 SINE Alu -4 143 2 2 651 3260 61 2 14 chr11 8660414 8660832 -113183024 - L1_Mus2 LINE L1 0 6566 6154 2 651 1034 53 0 8 chr11 8660832 8660964 -113182892 - L1_Mus2 LINE L1 -747 5891 5761 2 651 929 269 60 131 chr11 8661024 8661405 -113182451 - MTE2b LTR MaLR 0 379 26 2 651 411 288 8 8 chr11 8662827 8662946 -113180910 + GA-rich Low_complexity Low_complexity 3 121 0 2 651 334 330 59 48 chr11 8664951 8665222 -113178634 + L2 LINE L2 2618 2891 -528 2 651 1347 72 0 0 chr11 8665995 8666175 -113177681 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 651 1412 44 0 6 chr11 8666187 8666368 -113177488 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 651 667 327 10 15 chr11 8666719 8666924 -113176932 + ID_B1 SINE B4 1 204 -20 3 651 339 44 0 0 chr11 8666935 8666980 -113176876 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 651 277 344 130 6 chr11 8667136 8667297 -113176559 + MLT1I LTR MaLR 33 213 -198 3 651 252 185 0 0 chr11 8667330 8667384 -113176472 + (CACCAT)n Simple_repeat Simple_repeat 3 56 0 3 651 240 331 25 38 chr11 8667468 8667628 -113176228 + (CACCAT)n Simple_repeat Simple_repeat 3 160 0 3 651 203 152 22 0 chr11 8667639 8667685 -113176171 + (CAT)n Simple_repeat Simple_repeat 2 48 0 3 651 226 322 0 22 chr11 8667694 8667786 -113176070 + (CACCAT)n Simple_repeat Simple_repeat 5 94 0 3 651 365 164 15 0 chr11 8668140 8668207 -113175649 + MT2A LTR ERVL 1 68 -465 3 651 25 95 0 0 chr11 8668431 8668505 -113175351 + AT_rich Low_complexity Low_complexity 1 74 0 3 651 26 0 0 0 chr11 8668571 8668597 -113175259 + AT_rich Low_complexity Low_complexity 1 26 0 3 651 1336 150 14 9 chr11 8668647 8668869 -113174987 - Lx2 LINE L1 0 6997 6775 3 651 5772 110 6 0 chr11 8668867 8669683 -113174173 - Lx2 LINE L1 -352 6645 5825 3 651 7011 77 36 10 chr11 8669673 8671342 -113172514 - L1VL4 LINE L1 -1653 1906 188 3 651 208 213 16 16 chr11 8671376 8671438 -113172418 + T-rich Low_complexity Low_complexity 2 63 0 3 651 270 0 0 0 chr11 8672305 8672335 -113171521 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 651 262 294 149 6 chr11 8672881 8673042 -113170814 + L1MA5A LINE L1 6019 6202 -95 3 651 534 248 71 12 chr11 8673418 8673606 -113170250 + B3A SINE B2 23 216 0 3 651 282 404 0 0 chr11 8677847 8677956 -113165900 + PB1 SINE Alu 14 122 -5 3 651 4370 180 106 41 chr11 8678005 8678934 -113164922 + Lx9 LINE L1 6550 7531 -113 3 651 243 0 0 0 chr11 8678934 8678961 -113164895 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 651 4370 180 106 41 chr11 8678961 8679053 -113164803 + Lx9 LINE L1 7532 7637 -7 3 651 550 337 12 0 chr11 8679106 8679275 -113164581 - B3A SINE B2 -27 171 1 3 651 492 328 32 11 chr11 8679556 8679744 -113164112 + MER58A DNA MER1_type 4 195 -29 3 651 418 301 143 0 chr11 8680046 8680262 -113163594 + L1MB7 LINE L1 5813 6059 -125 3 651 788 120 17 0 chr11 8680266 8680383 -113163473 + PB1D9 SINE Alu 1 119 -1 3 651 428 279 0 39 chr11 8681036 8681163 -113162693 + L1MB3 LINE L1 6033 6154 -29 3 651 360 0 0 0 chr11 8684111 8684151 -113159705 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 651 255 286 94 26 chr11 8685618 8685842 -113158014 - L1MDa LINE L1 -5190 1443 1189 3 651 22 35 0 0 chr11 8686291 8686320 -113157536 + AT_rich Low_complexity Low_complexity 1 29 0 3 651 1742 297 84 56 chr11 8686403 8687203 -113156653 - Lx9 LINE L1 -220 7424 6603 3 651 405 320 75 40 chr11 8687479 8687801 -113156055 - L1MDa LINE L1 -6274 359 27 3 651 21 36 0 0 chr11 8688764 8688792 -113155064 + AT_rich Low_complexity Low_complexity 1 28 0 3 651 509 233 120 0 chr11 8689067 8689200 -113154656 + B1F SINE Alu 1 149 0 3 651 909 302 41 26 chr11 8689820 8690211 -113153645 + L1MA5 LINE L1 5504 5900 -400 3 651 502 77 44 0 chr11 8690214 8690305 -113153551 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 3 651 386 223 99 21 chr11 8692208 8692350 -113151506 + MLT1C LTR MaLR 42 194 -273 3 651 1428 92 0 5 chr11 8696319 8696526 -113147330 + L1_Mus4 LINE L1 6431 6636 0 3 651 24 0 0 0 chr11 8696562 8696586 -113147270 + AT_rich Low_complexity Low_complexity 1 24 0 3 651 336 281 80 25 chr11 8696887 8697110 -113146746 + L1MA6 LINE L1 5429 5663 -628 3 651 291 261 22 22 chr11 8697092 8697182 -113146674 + L1MA6 LINE L1 5868 5957 -343 3 651 293 168 162 16 chr11 8698365 8698531 -113145325 - Lx8 LINE L1 -3 7470 7256 3 651 577 297 42 0 chr11 8698535 8698700 -113145156 - Lx8 LINE L1 -488 6985 6814 3 651 471 294 141 8 chr11 8698728 8699054 -113144802 - L1MD1 LINE L1 -1676 6109 5736 3 651 251 301 154 23 chr11 8701772 8701993 -113141863 - L1MC4 LINE L1 -224 7818 7569 3 651 1078 101 184 5 chr11 8704706 8704896 -113138960 + URR1B DNA MER1_type 1 224 -1 3 651 267 304 0 0 chr11 8706149 8706241 -113137615 + CT-rich Low_complexity Low_complexity 1 92 0 3 651 246 62 0 0 chr11 8706915 8706947 -113136909 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 651 7926 75 21 6 chr11 8707307 8708407 -113135449 + L1_Mus4 LINE L1 5523 6636 0 3 651 420 192 280 13 chr11 8708652 8708809 -113135047 + B3 SINE B2 14 212 -4 3 651 26 0 0 0 chr11 8708812 8708838 -113135018 + AT_rich Low_complexity Low_complexity 1 26 0 3 651 513 275 140 48 chr11 8708923 8709194 -113134662 + MLT1B LTR MaLR 71 366 -24 3 651 759 116 0 0 chr11 8709893 8710014 -113133842 + (TC)n Simple_repeat Simple_repeat 2 122 0 3 651 864 97 0 0 chr11 8710099 8710223 -113133633 + (TCC)n Simple_repeat Simple_repeat 3 126 0 3 651 1222 35 0 0 chr11 8710225 8710366 -113133490 - B1_Mus1 SINE Alu -7 141 1 3 651 396 0 0 0 chr11 8710418 8710462 -113133394 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 651 263 247 11 116 chr11 8710498 8710585 -113133271 - RSINE1 SINE B4 -86 79 1 3 651 344 233 209 10 chr11 8710587 8710777 -113133079 - B4A SINE B4 -64 228 1 3 651 1550 10 5 0 chr11 8712219 8712426 -113131430 + (TTC)n Simple_repeat Simple_repeat 1 207 0 3 651 1058 135 0 6 chr11 8712426 8712605 -113131251 + (TTCTCC)n Simple_repeat Simple_repeat 2 179 0 3 651 277 188 12 12 chr11 8712614 8712695 -113131161 + CT-rich Low_complexity Low_complexity 2 82 0 3 651 200 182 0 0 chr11 8712713 8712746 -113131110 + (CTA)n Simple_repeat Simple_repeat 1 33 0 3 651 300 53 0 0 chr11 8712898 8712936 -113130920 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 651 365 300 18 0 chr11 8713069 8713179 -113130677 - LTR40a LTR ERVL -17 502 391 3 651 1415 271 51 24 chr11 8713193 8713301 -113130555 - RMER5 LTR ERV1 -16 518 407 3 651 1811 163 86 149 chr11 8713301 8713777 -113130079 - RLTR41 LTR ERV1 0 446 1 3 651 1415 271 51 24 chr11 8713777 8714159 -113129697 - RMER5 LTR ERV1 -128 406 15 3 651 1107 256 95 60 chr11 8714888 8715340 -113128516 - Lx9 LINE L1 -296 7348 6881 3 651 21 36 0 0 chr11 8715340 8715368 -113128488 + AT_rich Low_complexity Low_complexity 1 28 0 3 651 222 128 0 25 chr11 8715368 8715408 -113128448 + T-rich Low_complexity Low_complexity 2 40 0 3 651 491 112 0 12 chr11 8715408 8715489 -113128367 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 651 667 168 22 37 chr11 8715490 8715626 -113128230 - B1_Mur3 SINE Alu -15 134 1 3 651 504 292 110 58 chr11 8719088 8719397 -113124459 + ORR1E LTR MaLR 33 357 -2 3 651 270 0 0 0 chr11 8719656 8719686 -113124170 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 651 201 133 0 0 chr11 8720006 8720036 -113123820 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 3 651 207 0 0 0 chr11 8720591 8720614 -113123242 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 3 651 1051 90 21 0 chr11 8720871 8721015 -113122841 - B1_Mus1 SINE Alu -1 147 1 3 651 214 273 14 77 chr11 8722028 8722171 -113121685 + CT-rich Low_complexity Low_complexity 2 135 0 3 651 396 349 72 16 chr11 8722895 8723393 -113120463 + L1M2 LINE L1 2139 2674 -3908 3 651 3053 308 69 35 chr11 8723989 8725243 -113118613 + MTE-int LTR MaLR 67 1363 -217 3 651 186 43 0 0 chr11 8725509 8725532 -113118324 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 651 553 198 65 16 chr11 8726544 8726667 -113117189 + B3 SINE B2 58 186 -30 3 651 297 176 0 0 chr11 8726679 8726730 -113117126 - L1MD LINE L1 -1351 4795 4745 3 651 189 196 0 0 chr11 8727678 8727724 -113116132 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 651 569 275 24 36 chr11 8727742 8727908 -113115948 - RSINE1 SINE B4 0 165 2 3 651 485 246 42 59 chr11 8732332 8732501 -113111355 + B3A SINE B2 41 203 -13 3 651 378 0 0 0 chr11 8732512 8732554 -113111302 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 651 220 154 39 0 chr11 8732554 8732606 -113111250 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 3 651 933 79 39 0 chr11 8732842 8732969 -113110887 - B1_Mus1 SINE Alu -13 135 4 3 651 192 40 0 0 chr11 8735065 8735090 -113108766 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 3 651 490 333 117 0 chr11 8735091 8735271 -113108585 + B4 SINE B4 90 290 -2 3 651 505 281 23 0 chr11 8736913 8737041 -113106815 + ID_B1 SINE B4 86 216 -8 3 651 297 287 104 21 chr11 8737473 8737569 -113106287 + RSINE1 SINE B4 34 137 -28 3 651 2888 19 0 0 chr11 8737869 8738191 -113105665 + RLTRETN_Mm LTR ERVK 1 322 0 3 651 42942 20 2 3 chr11 8738191 8743041 -113100815 + MMETn-int LTR ERVK 1 4844 0 3 651 2923 9 0 0 chr11 8743041 8743363 -113100493 + RLTRETN_Mm LTR ERVK 1 322 0 3 651 290 307 164 42 chr11 8745482 8745696 -113098160 - MER33 DNA MER1_type -83 241 2 3 651 255 324 52 0 chr11 8746257 8746393 -113097463 - MER33 DNA MER1_type 0 324 182 3 651 631 328 72 27 chr11 8747281 8747613 -113096243 + MER70B LTR ERVL 188 534 -44 3 651 605 312 6 17 chr11 8749191 8749364 -113094492 + B4 SINE B4 101 271 -21 3 651 468 91 0 0 chr11 8749392 8749458 -113094398 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 651 180 0 0 0 chr11 8749458 8749478 -113094378 + (CCA)n Simple_repeat Simple_repeat 1 20 0 3 651 340 346 15 0 chr11 8751044 8751177 -113092679 + MLT1B LTR MaLR 217 351 -39 3 651 557 257 16 27 chr11 8751205 8751393 -113092463 - Tigger7 DNA MER2_type -21 2470 2285 3 651 273 308 0 0 chr11 8751418 8751496 -113092360 - Tigger7 DNA MER2_type -2374 117 40 3 651 9351 120 26 3 chr11 8751498 8753539 -113090317 + L1Md_F LINE L1 508 2596 -3287 3 651 3102 80 13 60 chr11 8753539 8753991 -113089865 + L1_Mus2 LINE L1 6136 6566 0 3 651 301 216 182 0 chr11 8757350 8757438 -113086418 - L2a LINE L2 0 3426 3272 3 651 370 246 103 0 chr11 8757548 8757674 -113086182 + Tigger5 DNA MER2_type 2154 2292 -114 4 651 519 17 0 0 chr11 8758041 8758101 -113085755 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 4 651 450 0 0 0 chr11 8758122 8758172 -113085684 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 651 637 283 18 25 chr11 8758173 8758336 -113085520 - B3A SINE B2 -36 162 1 4 651 1029 237 0 0 chr11 8758783 8758994 -113084862 - B3 SINE B2 0 216 6 4 651 210 139 0 0 chr11 8758994 8759030 -113084826 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 651 230 254 14 56 chr11 8759039 8759110 -113084746 - tRNA-Ala-GCA tRNA tRNA -5 70 3 4 651 784 240 113 28 chr11 8761488 8761771 -113082085 - Lx8 LINE L1 0 7473 7167 4 651 390 256 37 22 chr11 8761818 8761954 -113081902 - L1MD LINE L1 -1225 4921 4784 4 651 297 0 0 0 chr11 8762834 8762867 -113080989 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 651 33 25 0 0 chr11 8765021 8765061 -113078795 + AT_rich Low_complexity Low_complexity 1 40 0 4 651 733 211 199 6 chr11 8765075 8765251 -113078605 - B3 SINE B2 -2 214 5 4 651 378 0 0 0 chr11 8765344 8765386 -113078470 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 651 213 303 0 108 chr11 8766436 8766547 -113077309 - MIRm SINE MIR -62 214 116 4 651 466 265 15 0 chr11 8767341 8767477 -113076379 + MLT2B4 LTR ERVL 20 157 -399 4 651 2339 121 55 3 chr11 8769066 8769414 -113074442 + ORR1B2 LTR MaLR 1 366 -1 4 651 272 288 155 16 chr11 8770938 8771125 -113072731 + B3 SINE B2 3 215 -1 4 651 1197 149 19 0 chr11 8771348 8771556 -113072300 + ORR1B2 LTR MaLR 1 212 -155 4 651 699 256 0 0 chr11 8772851 8772988 -113070868 + RSINE1 SINE B4 4 140 -25 4 651 405 0 0 0 chr11 8772988 8773033 -113070823 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 651 252 287 20 41 chr11 8773400 8773498 -113070358 + RMER15 LTR ERVL 299 394 -181 4 651 251 297 17 43 chr11 8773820 8773936 -113069920 + RMER15 LTR ERVL 299 411 -164 4 651 1221 55 0 0 chr11 8774822 8774967 -113068889 - B1_Mus2 SINE Alu 0 147 3 4 651 681 227 0 0 chr11 8775373 8775505 -113068351 + B1F2 SINE Alu 18 149 0 4 651 2781 52 14 11 chr11 8776144 8776493 -113067363 + L1_Mus3 LINE L1 6037 6386 -252 4 651 4440 41 6 2 chr11 8776493 8777028 -113066828 + L1Md_F3 LINE L1 6048 6584 0 4 651 1635 71 97 0 chr11 8777033 8777271 -113066585 + L1_Mus3 LINE L1 6374 6634 -4 4 651 641 211 27 27 chr11 8777790 8777936 -113065920 + B1F2 SINE Alu 3 148 -1 4 651 195 42 0 0 chr11 8779551 8779575 -113064281 + (TGGGGG)n Simple_repeat Simple_repeat 4 27 0 4 651 362 243 29 0 chr11 8779648 8779718 -113064138 + ID4_ SINE ID 1 72 -11 4 651 201 195 0 24 chr11 8779720 8779762 -113064094 + A-rich Low_complexity Low_complexity 3 43 0 4 651 1975 137 109 3 chr11 8780504 8780834 -113063022 + ORR1B2 LTR MaLR 1 365 -2 4 652 1138 66 0 0 chr11 8781922 8782059 -113061797 + B1_Mm SINE Alu 1 137 -10 4 652 261 83 0 0 chr11 8782219 8782255 -113061601 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 4 652 3478 278 102 44 chr11 8782291 8784102 -113059754 + Lx8 LINE L1 5781 7691 -5 4 652 438 20 0 0 chr11 8784102 8784153 -113059703 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 652 417 325 0 0 chr11 8784885 8785036 -113058820 + (TGG)n Simple_repeat Simple_repeat 1 151 0 4 652 4110 84 5 24 chr11 8785085 8785680 -113058176 + RLTR19-int LTR ERVK 1429 2012 -4125 4 652 204 40 0 0 chr11 8785683 8785708 -113058148 + (A)n Simple_repeat Simple_repeat 1 25 0 4 652 775 283 66 16 chr11 8787314 8787558 -113056298 + B4A SINE B4 29 284 -8 4 652 223 195 0 0 chr11 8787628 8787669 -113056187 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 652 1491 255 86 85 chr11 8787825 8788056 -113055800 + Lx9 LINE L1 6979 7193 -451 4 652 1911 95 32 3 chr11 8788056 8788340 -113055516 + Lx2 LINE L1 6702 6993 -4 4 652 1491 255 86 85 chr11 8788340 8788595 -113055261 + Lx9 LINE L1 7194 7417 -227 4 652 261 0 0 0 chr11 8788595 8788624 -113055232 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 652 459 0 0 0 chr11 8788624 8788674 -113055182 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 652 1491 255 86 85 chr11 8788674 8788835 -113055021 + Lx9 LINE L1 7418 7628 -16 4 652 183 42 0 0 chr11 8790231 8790255 -113053601 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 652 687 137 0 0 chr11 8790784 8790908 -113052948 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 4 652 23619 135 75 5 chr11 8790912 8796339 -113047517 + L1_Mus4 LINE L1 356 6195 -441 4 652 16726 178 21 52 chr11 8796332 8799010 -113044846 + Lx5 LINE L1 2394 5061 -825 4 652 796 73 0 0 chr11 8799010 8799120 -113044736 + B1_Mus2 SINE Alu 38 147 0 4 652 16726 178 21 52 chr11 8799120 8799163 -113044693 + Lx5 LINE L1 5062 5105 -781 4 652 204 67 0 0 chr11 8799163 8799193 -113044663 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 4 652 16726 160 30 31 chr11 8799193 8801113 -113042743 + Lx5 LINE L1 5106 7047 -3 4 652 225 0 0 0 chr11 8801932 8801957 -113041899 + (T)n Simple_repeat Simple_repeat 1 25 0 4 652 203 207 0 33 chr11 8802245 8802305 -113041551 + (TATATG)n Simple_repeat Simple_repeat 4 61 0 4 652 280 274 0 0 chr11 8802306 8802368 -113041488 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 4 652 5148 120 65 5 chr11 8803099 8803977 -113039879 - RMER17B LTR ERVK 0 958 28 4 652 25 0 0 0 chr11 8804119 8804144 -113039712 + AT_rich Low_complexity Low_complexity 1 25 0 4 652 242 286 12 23 chr11 8804144 8804230 -113039626 - Lx8 LINE L1 -2 7471 7387 4 652 765 198 72 0 chr11 8804249 8804416 -113039440 - Lx8 LINE L1 -147 7326 7148 4 652 269 175 34 34 chr11 8804839 8804898 -113038958 + RMER17B LTR ERVK 783 841 -117 4 652 491 0 0 17 chr11 8804977 8805037 -113038819 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 652 315 71 0 0 chr11 8805953 8805995 -113037861 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 4 652 1177 90 54 0 chr11 8805999 8806166 -113037690 + B2_Mm1t SINE B2 4 179 -14 4 652 228 115 82 0 chr11 8806243 8806304 -113037552 + B2_Mm2 SINE B2 130 195 0 4 652 229 200 0 0 chr11 8806316 8806366 -113037490 + GA-rich Low_complexity Low_complexity 4 53 0 4 652 216 0 0 0 chr11 8806366 8806390 -113037466 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 4 652 3219 81 4 7 chr11 8806985 8807421 -113036435 + L1Md_F2 LINE L1 5174 5586 -297 4 652 7879 54 10 19 chr11 8807421 8808426 -113035430 + L1Md_F2 LINE L1 5587 6582 0 4 652 361 161 37 0 chr11 8808758 8808839 -113035017 + GA-rich Low_complexity Low_complexity 3 86 0 4 652 1039 216 28 14 chr11 8809251 8809462 -113034394 + B3 SINE B2 3 216 0 4 652 675 243 138 47 chr11 8810753 8811237 -113032619 + L1M4b LINE L1 1304 1803 -5531 4 652 511 267 161 32 chr11 8811288 8811541 -113032315 + L1M4b LINE L1 2614 2906 -4428 4 652 1171 234 151 9 chr11 8811541 8811873 -113031983 - MTE2b LTR MaLR 0 379 1 4 652 511 267 161 32 chr11 8811873 8812142 -113031714 + L1M4b LINE L1 2907 3202 -4132 4 652 308 251 85 40 chr11 8812286 8812485 -113031371 + L1M4b LINE L1 3106 3313 -3693 4 652 1003 244 82 12 chr11 8812476 8812733 -113031123 + Lx8 LINE L1 6881 7155 -318 4 652 838 285 116 0 chr11 8812948 8813352 -113030504 + L1M4b LINE L1 4253 4703 -2303 4 652 588 318 55 3 chr11 8813373 8813663 -113030193 - MLT1A1 LTR MaLR 0 408 104 4 652 1366 260 78 76 chr11 8813763 8814343 -113029513 + L1M4b LINE L1 4722 5273 -1733 4 652 388 315 46 0 chr11 8814343 8814473 -113029383 + B1F SINE Alu 1 136 -13 4 652 1366 260 78 76 chr11 8814473 8814640 -113029216 + L1M4b LINE L1 5274 5470 -1536 4 652 228 286 29 0 chr11 8814878 8814948 -113028908 + ID4_ SINE ID 1 72 -11 4 652 1827 193 39 24 chr11 8815074 8815456 -113028400 - MTD LTR MaLR 0 419 32 4 652 1214 127 72 14 chr11 8815668 8815891 -113027965 + ORR1A4 LTR MaLR 94 329 0 4 652 279 133 0 0 chr11 8816595 8816640 -113027216 + (T)n Simple_repeat Simple_repeat 1 45 0 4 652 517 223 86 49 chr11 8816651 8816876 -113026980 - Lx7 LINE L1 0 7696 7462 4 652 966 46 120 15 chr11 8816876 8817009 -113026847 + B1_Mus2 SINE Alu 1 147 0 4 652 517 223 86 49 chr11 8817009 8817028 -113026828 - Lx7 LINE L1 -235 7461 7443 4 652 604 164 23 0 chr11 8817148 8817276 -113026580 + GA-rich Low_complexity Low_complexity 2 132 0 4 652 2725 166 57 25 chr11 8817296 8817827 -113026029 + Lx7 LINE L1 6793 7340 -356 4 652 774 246 34 55 chr11 8817831 8818040 -113025816 - B3A SINE B2 -12 204 1 4 652 705 139 368 6 chr11 8818552 8818718 -113025138 + URR1B DNA MER1_type 1 225 0 4 652 972 160 0 7 chr11 8819975 8820126 -113023730 + B1_Mur4 SINE Alu 1 150 0 4 652 225 0 0 0 chr11 8820130 8820155 -113023701 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 652 5663 47 65 0 chr11 8820300 8820997 -113022859 + RLTR4_Mm LTR ERV1 1 742 0 4 652 69246 9 2 0 chr11 8820997 8828583 -113015273 + RLTR4_MM-int LTR ERV1 1 7601 0 4 652 5663 47 65 0 chr11 8828583 8829280 -113014576 + RLTR4_Mm LTR ERV1 1 742 0 4 652 534 152 0 0 chr11 8829493 8829585 -113014271 + GA-rich Low_complexity Low_complexity 1 92 0 4 652 5168 80 12 25 chr11 8829821 8830636 -113013220 + RLTR13C2 LTR ERVK 1 1023 0 4 652 579 150 20 0 chr11 8830657 8830757 -113013099 + URR1B DNA MER1_type 6 107 -118 4 652 453 110 14 0 chr11 8830752 8830825 -113013031 + URR1B DNA MER1_type 151 224 -1 4 652 623 78 11 0 chr11 8831752 8831842 -113012014 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 652 22 35 0 0 chr11 8831989 8832018 -113011838 + AT_rich Low_complexity Low_complexity 1 29 0 4 652 264 330 21 0 chr11 8832996 8833090 -113010766 - PB1D10 SINE Alu -21 96 1 4 652 1392 226 70 65 chr11 8833819 8834431 -113009425 + RMER12 LTR ERVK 1 629 -1219 4 652 4550 46 2 0 chr11 8834443 8834989 -113008867 - L1Md_F3 LINE L1 -284 6300 5754 4 652 1874 74 37 4 chr11 8834989 8835259 -113008597 + L1Md_F3 LINE L1 6306 6584 0 4 652 409 282 78 57 chr11 8835264 8835656 -113008200 + RLTR22_Mur LTR ERVK 587 1285 -119 4 652 1400 141 38 66 chr11 8835645 8835933 -113007923 + RMER12 LTR ERVK 988 1267 -55 4 652 200 300 0 16 chr11 8837216 8837277 -113006579 + CT-rich Low_complexity Low_complexity 2 61 0 4 652 233 222 60 60 chr11 8837600 8837667 -113006189 - RLTR8 LTR ERVK -153 212 146 4 652 2447 118 95 23 chr11 8837895 8838338 -113005518 + IAPLTR2_Mm LTR ERVK 1 475 0 4 652 471 0 0 0 chr11 8838344 8838395 -113005461 - RLTR10-int LTR ERVK -1635 352 302 4 652 2298 78 122 11 chr11 8838395 8838746 -113005110 - RLTR10 LTR ERVK 0 390 1 4 652 600 307 50 74 chr11 8838852 8839151 -113004705 + ORR1E LTR MaLR 3 294 -65 4 652 240 340 60 94 chr11 8839310 8839544 -113004312 + MER74A LTR ERVL 168 393 -165 4 652 2978 102 18 45 chr11 8839912 8840406 -113003450 - RLTR28 LTR ERVL -43 481 1 5 652 726 304 146 13 chr11 8841209 8841599 -113002257 + RMER5 LTR ERV1 53 494 -40 5 652 434 314 0 9 chr11 8841599 8841705 -113002151 + ID_B1 SINE B4 81 185 -39 5 652 389 317 11 55 chr11 8841600 8841739 -113002117 + PB1D10 SINE Alu 1 138 -11 5 652 234 0 0 0 chr11 8842294 8842320 -113001536 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 652 324 0 0 0 chr11 8842376 8842412 -113001444 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 652 378 280 203 57 chr11 8842683 8842895 -113000961 + RMER15 LTR ERVL 319 561 -14 5 652 235 290 130 0 chr11 8843227 8843296 -113000560 + MER21B LTR ERV1 449 526 -337 5 652 308 83 0 20 chr11 8843674 8843723 -113000133 + (TAA)n Simple_repeat Simple_repeat 2 49 0 5 652 576 0 0 0 chr11 8843848 8843912 -112999944 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 5 652 213 195 0 0 chr11 8843923 8843964 -112999892 + CT-rich Low_complexity Low_complexity 1 41 0 5 652 309 246 107 38 chr11 8844366 8844497 -112999359 - MER21B LTR ERV1 -51 812 673 5 652 562 298 26 0 chr11 8844770 8844921 -112998935 - MER21B LTR ERV1 -694 169 15 5 652 492 244 35 0 chr11 8846266 8846381 -112997475 + Tigger7 DNA MER2_type 38 156 -2335 5 652 1380 0 15 22 chr11 8848365 8848636 -112995220 + (TG)n Simple_repeat Simple_repeat 1 268 0 5 652 245 272 282 14 chr11 8848910 8849197 -112994659 - L2 LINE L2 -527 2892 2529 5 652 1197 249 161 61 chr11 8849205 8849726 -112994130 + Lx7 LINE L1 7122 7694 -2 5 652 1903 221 63 2 chr11 8850722 8851117 -112992739 + MTD LTR MaLR 1 419 0 5 652 663 241 176 53 chr11 8851316 8851561 -112992295 + MTEb LTR MaLR 102 376 -3 5 652 1115 160 58 62 chr11 8852249 8852475 -112991381 - URR1B DNA MER1_type 0 225 1 5 652 1234 63 6 0 chr11 8853246 8853404 -112990452 + B2_Mm1a SINE B2 2 160 -33 5 652 180 0 0 0 chr11 8853404 8853424 -112990432 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 652 1208 117 0 37 chr11 8853424 8853452 -112990404 + B2_Mm2 SINE B2 160 181 -14 5 652 363 44 0 0 chr11 8853504 8853549 -112990307 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 652 7755 59 36 0 chr11 8854170 8855153 -112988703 + L1_Mus3 LINE L1 5617 6634 -4 5 652 237 97 0 0 chr11 8855265 8855296 -112988560 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 652 822 211 0 0 chr11 8855296 8855476 -112988380 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 652 318 260 67 59 chr11 8855507 8855642 -112988214 - L1MCa LINE L1 -4550 1958 1823 5 652 292 234 123 34 chr11 8856049 8856195 -112987661 + Lx7 LINE L1 7254 7412 -284 5 652 510 276 9 117 chr11 8857078 8857300 -112986556 + B3A SINE B2 1 198 0 5 652 374 295 47 19 chr11 8857579 8857686 -112986170 + B1F SINE Alu 21 130 -19 5 652 450 0 0 0 chr11 8857693 8857743 -112986113 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 5 652 1173 112 176 0 chr11 8857748 8857953 -112985903 + Lx2 LINE L1 6756 6996 -1 5 652 213 108 0 0 chr11 8857959 8857996 -112985860 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 5 652 225 0 0 0 chr11 8858565 8858590 -112985266 + (A)n Simple_repeat Simple_repeat 1 25 0 5 652 315 233 58 11 chr11 8859057 8859144 -112984712 + ORR1D2 LTR MaLR 279 369 -1 5 652 1815 154 40 15 chr11 8859564 8859893 -112983963 + ORR1A1 LTR MaLR 2 338 -8 5 652 1315 123 10 0 chr11 8859897 8860100 -112983756 + ORR1A1-int LTR MaLR 1 205 -1758 5 652 1636 100 4 75 chr11 8860061 8860342 -112983514 - ORR1A4 LTR MaLR -68 261 1 5 652 180 0 0 0 chr11 8860835 8860855 -112983001 + (TCTCCC)n Simple_repeat Simple_repeat 1 20 0 5 652 204 125 0 0 chr11 8862160 8862192 -112981664 + (CCG)n Simple_repeat Simple_repeat 2 33 0 5 652 387 0 0 0 chr11 8862786 8862829 -112981027 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 652 216 241 19 0 chr11 8863169 8863223 -112980633 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 652 1849 253 84 17 chr11 8863334 8863797 -112980059 + Lx6 LINE L1 6912 7405 -55 5 652 386 279 188 13 chr11 8865363 8865512 -112978344 + MER45A DNA Tip100 1 175 -3 5 652 327 49 0 0 chr11 8865536 8865577 -112978279 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 652 5683 180 65 2 chr11 8866782 8867900 -112975956 + Lx3C LINE L1 5747 6974 -2 5 652 345 100 0 0 chr11 8867913 8867963 -112975893 + (GGGAA)n Simple_repeat Simple_repeat 4 53 0 5 652 1220 86 6 0 chr11 8867965 8868140 -112975716 + (AGGGGG)n Simple_repeat Simple_repeat 3 178 0 5 652 667 238 34 62 chr11 8868267 8868446 -112975410 + B3A SINE B2 2 175 -23 5 652 324 0 0 0 chr11 8868446 8868482 -112975374 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 652 3588 211 48 10 chr11 8868650 8869438 -112974418 + Lx5 LINE L1 5849 6666 -384 5 652 321 221 52 35 chr11 8869438 8869555 -112974301 + MTB_Mm LTR MaLR 258 407 0 5 652 243 0 0 0 chr11 8869737 8869764 -112974092 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 652 300 351 43 29 chr11 8871030 8871168 -112972688 + L1MD LINE L1 4559 4698 -1448 5 652 303 333 36 9 chr11 8871440 8871552 -112972304 + L1M5 LINE L1 4992 5106 -1040 5 652 324 221 29 0 chr11 8871571 8871639 -112972217 + tRNA-Ala-GCY_ tRNA tRNA 3 72 -3 5 652 181 156 19 151 chr11 8875170 8875223 -112968633 + MIR SINE MIR 25 70 -138 5 652 262 264 8 0 chr11 8876313 8876416 -112967440 + GA-rich Low_complexity Low_complexity 1 103 0 5 652 245 297 137 9 chr11 8876470 8876681 -112967175 - L1MB2 LINE L1 -78 6093 5856 5 652 375 323 23 81 chr11 8877007 8877179 -112966677 + B4 SINE B4 13 174 -118 5 652 324 0 0 0 chr11 8877448 8877484 -112966372 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 652 192 294 29 29 chr11 8878752 8878822 -112965034 - L2b LINE L2 -35 3340 3271 5 652 354 23 0 0 chr11 8879383 8879426 -112964430 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 652 696 259 108 31 chr11 8880157 8880352 -112963504 + ID_B1 SINE B4 9 218 -6 5 652 451 234 185 7 chr11 8880681 8880827 -112963029 + MER34 LTR ERV1 133 304 -238 5 652 378 42 0 0 chr11 8880881 8880929 -112962927 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 652 362 312 52 59 chr11 8880929 8881082 -112962774 + MER34 LTR ERV1 391 542 0 5 652 3178 49 29 3 chr11 8881519 8881905 -112961951 - MTA_Mm LTR MaLR 0 396 1 5 652 275 113 19 0 chr11 8882466 8882519 -112961337 + (TGG)n Simple_repeat Simple_repeat 2 55 0 5 652 238 194 14 14 chr11 8882965 8883038 -112960818 + C-rich Low_complexity Low_complexity 3 75 0 5 652 325 263 26 13 chr11 8885029 8885106 -112958750 - ORR1E LTR MaLR -224 135 58 5 652 874 216 51 10 chr11 8885149 8885345 -112958511 + B3 SINE B2 3 206 -10 5 652 180 0 0 0 chr11 8886444 8886464 -112957392 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 652 701 132 8 0 chr11 8886979 8887100 -112956756 + (TC)n Simple_repeat Simple_repeat 2 123 0 5 652 201 154 0 0 chr11 8889074 8889113 -112954743 + GA-rich Low_complexity Low_complexity 3 41 0 5 652 2774 194 169 20 chr11 8889477 8889572 -112954284 - Lx9 LINE L1 0 7644 7542 5 652 806 162 13 45 chr11 8889572 8889727 -112954129 - B1_Mur4 SINE Alu 0 150 1 5 652 2774 194 169 20 chr11 8889727 8889756 -112954100 - Lx9 LINE L1 -103 7541 7478 5 652 363 60 0 0 chr11 8889756 8889806 -112954050 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 652 2774 194 169 20 chr11 8889806 8890386 -112953470 - Lx9 LINE L1 -167 7477 6835 5 652 294 179 0 0 chr11 8890450 8890506 -112953350 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 5 652 2383 159 136 26 chr11 8891653 8892418 -112951438 + RMER6C LTR ERVK 1 720 0 5 652 237 33 0 0 chr11 8892677 8892707 -112951149 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 652 570 271 40 27 chr11 8892711 8892859 -112950997 - RSINE1 SINE B4 -14 151 2 5 652 24 53 0 0 chr11 8893145 8893183 -112950673 + AT_rich Low_complexity Low_complexity 1 38 0 5 652 25 65 0 0 chr11 8895384 8895430 -112948426 + AT_rich Low_complexity Low_complexity 1 46 0 5 652 236 365 86 14 chr11 8895437 8895576 -112948280 + B1F SINE Alu 1 149 0 5 652 218 351 26 0 chr11 8895970 8896047 -112947809 + ID4_ SINE ID 2 80 -3 5 652 358 212 25 0 chr11 8896516 8896596 -112947260 + ID4_ SINE ID 2 83 0 5 652 1144 34 0 64 chr11 8897354 8897510 -112946346 - B1_Mus2 SINE Alu 0 147 2 5 652 2018 160 141 3 chr11 8897526 8897896 -112945960 + MTC LTR MaLR 1 421 0 5 652 1309 144 4 0 chr11 8898917 8899146 -112944710 - Lx2 LINE L1 0 6997 6768 5 652 290 191 16 0 chr11 8899204 8899267 -112944589 + ID4 SINE ID 1 64 -19 5 652 4107 131 2 11 chr11 8900233 8900939 -112942917 + L1VL4 LINE L1 381 1077 -2482 5 652 3579 20 2 0 chr11 8900939 8901334 -112942522 - MTA_Mm LTR MaLR 0 396 1 5 652 4107 82 2 10 chr11 8901334 8901691 -112942165 + L1VL4 LINE L1 1078 1433 -2126 5 652 5138 98 7 9 chr11 8901695 8902451 -112941405 - MusHAL1 LINE L1 -1380 1332 579 5 652 4785 217 36 53 chr11 8904507 8905628 -112938228 + Lx5 LINE L1 5936 7037 -13 5 652 26 30 0 0 chr11 8905650 8905683 -112938173 + AT_rich Low_complexity Low_complexity 1 33 0 5 652 21 0 0 0 chr11 8906176 8906197 -112937659 + AT_rich Low_complexity Low_complexity 1 21 0 5 652 967 169 0 0 chr11 8908159 8908307 -112935549 + B1_Mur2 SINE Alu 2 149 0 5 652 534 262 12 42 chr11 8908365 8908394 -112935462 + ID_B1 SINE B4 61 222 -2 5 652 793 159 7 0 chr11 8908394 8908532 -112935324 + B1_Mus1 SINE Alu 9 147 -1 5 652 294 209 102 0 chr11 8910022 8910108 -112933748 - PB1D9 SINE Alu -52 95 1 5 652 239 257 38 63 chr11 8910039 8910118 -112933738 - ID_B1 SINE B4 -70 154 78 5 652 382 50 0 48 chr11 8911623 8911686 -112932170 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 6 652 255 369 172 8 chr11 8911988 8912122 -112931734 + RSINE1 SINE B4 10 165 0 6 652 388 306 67 99 chr11 8912426 8912654 -112931202 - B4 SINE B4 -18 274 51 6 81 3233 62 54 67 chr11 8912654 8913135 -112930721 - IAPLTR2_Mm LTR ERVK 0 475 1 6 653 388 306 67 99 chr11 8913135 8913189 -112930667 - B4 SINE B4 -242 50 1 6 653 900 62 141 0 chr11 8913390 8913518 -112930338 + B1_Mm SINE Alu 2 147 0 6 653 1175 75 0 0 chr11 8916686 8916832 -112927024 + B1_Mm SINE Alu 2 147 0 6 653 255 12 0 125 chr11 8916837 8916933 -112926923 + (CAAAC)n Simple_repeat Simple_repeat 2 85 0 6 653 290 254 0 27 chr11 8916952 8917025 -112926831 + PB1D10 SINE Alu 41 111 -6 6 653 728 281 121 4 chr11 8917145 8917402 -112926454 - MER2 DNA MER2_type 0 345 59 6 653 700 345 4 8 chr11 8918349 8918586 -112925270 + B4A SINE B4 1 236 -56 6 653 1185 37 0 0 chr11 8919686 8919822 -112924034 + B1_Mm SINE Alu 2 137 -10 6 653 504 0 0 0 chr11 8919822 8919878 -112923978 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 6 653 851 309 101 13 chr11 8920136 8920673 -112923183 + L1MB8 LINE L1 5589 6172 -6 6 653 1390 223 150 15 chr11 8920889 8921286 -112922570 + RLTR20B1 LTR ERVK 10 458 -105 6 653 342 0 0 0 chr11 8921286 8921324 -112922532 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 653 1390 223 150 15 chr11 8921324 8921399 -112922457 + RLTR20B1 LTR ERVK 459 545 -18 6 653 309 250 0 14 chr11 8921601 8921670 -112922186 + ID4_ SINE ID 2 69 -14 6 653 564 219 46 34 chr11 8922179 8922354 -112921502 - HAL1-2a_MD LINE L1 -503 2521 2345 6 653 206 136 0 22 chr11 8922360 8922405 -112921451 + (ATGGTG)n Simple_repeat Simple_repeat 6 49 0 6 653 207 0 0 0 chr11 8923089 8923112 -112920744 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 653 1168 51 13 0 chr11 8923113 8923271 -112920585 - B2_Mm2 SINE B2 -34 161 2 6 653 410 264 37 9 chr11 8923601 8923708 -112920148 - PB1D9 SINE Alu -8 112 3 6 653 471 313 27 7 chr11 8924296 8924444 -112919412 + B3A SINE B2 1 151 -47 6 653 327 104 0 0 chr11 8924446 8924494 -112919362 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 653 490 313 108 56 chr11 8925123 8925188 -112918668 - L1M4 LINE L1 -415 5758 5688 6 653 270 273 13 13 chr11 8925188 8925266 -112918590 - ID4_ SINE ID -2 81 4 6 653 578 314 107 54 chr11 8925266 8925681 -112918175 - L1M4 LINE L1 -486 5687 5254 6 653 256 213 24 2 chr11 8925836 8925932 -112917924 + PB1D10 SINE Alu 43 141 -8 6 653 349 269 0 0 chr11 8925951 8926029 -112917827 + ID4_ SINE ID 6 83 0 6 653 342 0 0 0 chr11 8926318 8926356 -112917500 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 653 356 294 128 46 chr11 8926374 8926702 -112917154 - L1M4 LINE L1 -1877 4269 3915 6 653 1002 148 0 20 chr11 8926878 8927030 -112916826 + B1_Mur2 SINE Alu 1 149 0 6 653 726 153 0 0 chr11 8927171 8927334 -112916522 + (TATG)n Simple_repeat Simple_repeat 2 164 0 6 653 268 238 127 6 chr11 8927399 8927537 -112916319 - L1M4 LINE L1 -2600 3546 3396 6 653 252 149 0 0 chr11 8929908 8929955 -112913901 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 653 1678 191 71 0 chr11 8930733 8931073 -112912783 + MTD LTR MaLR 1 364 -55 6 653 456 307 102 38 chr11 8931734 8931998 -112911858 + B4A SINE B4 4 284 -8 6 653 272 211 14 0 chr11 8932002 8932073 -112911783 + (CATA)n Simple_repeat Simple_repeat 3 74 0 6 653 1356 44 0 0 chr11 8932187 8932367 -112911489 + (TGG)n Simple_repeat Simple_repeat 1 180 0 6 653 210 231 19 0 chr11 8932377 8932429 -112911427 + GA-rich Low_complexity Low_complexity 2 54 0 6 653 775 260 76 71 chr11 8932503 8932884 -112910972 + L1MB5 LINE L1 1189 1571 -4813 6 653 211 159 63 0 chr11 8932958 8933021 -112910835 + GA-rich Low_complexity Low_complexity 4 70 0 6 653 390 314 116 99 chr11 8933179 8933532 -112910324 - ORR1E LTR MaLR 0 359 1 6 653 641 74 11 0 chr11 8933676 8933771 -112910085 - L1Md_F LINE L1 -5418 1101 1006 6 653 2249 55 0 0 chr11 8933771 8934044 -112909812 + L1_Mus2 LINE L1 6293 6565 -1 6 653 512 244 108 22 chr11 8934062 8934284 -112909572 + L1MB5 LINE L1 2176 2416 -3968 6 653 703 178 0 0 chr11 8934351 8934469 -112909387 + B3 SINE B2 2 119 -97 6 653 285 29 0 0 chr11 8934543 8934577 -112909279 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 653 468 0 0 0 chr11 8934649 8934701 -112909155 + (TTA)n Simple_repeat Simple_repeat 3 54 0 6 653 360 299 171 52 chr11 8934747 8935174 -112908682 + L1MB5 LINE L1 5011 5488 -894 6 653 745 330 121 46 chr11 8935185 8935931 -112907925 + L1MB5 LINE L1 5555 6356 -54 6 653 2349 271 63 43 chr11 8936248 8937062 -112906794 + Lx8 LINE L1 6565 7394 -79 6 653 21 0 0 0 chr11 8937093 8937114 -112906742 + AT_rich Low_complexity Low_complexity 1 21 0 6 653 529 292 12 55 chr11 8937332 8937495 -112906361 - RSINE1 SINE B4 -8 157 2 6 653 866 201 0 0 chr11 8937522 8937671 -112906185 - B1_Mur4 SINE Alu -1 149 1 6 653 964 209 92 43 chr11 8937712 8937850 -112906006 + Lx7 LINE L1 7373 7525 -171 6 653 267 31 0 0 chr11 8937850 8937882 -112905974 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 6 653 964 209 92 43 chr11 8937882 8938048 -112905808 + Lx7 LINE L1 7526 7691 -5 6 653 452 318 59 39 chr11 8938627 8938882 -112904974 + MLT1A LTR MaLR 88 347 -27 6 653 308 94 19 0 chr11 8939934 8939987 -112903869 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 653 242 323 94 0 chr11 8940721 8940817 -112903039 + PB1D10 SINE Alu 1 105 -12 6 653 1373 87 38 0 chr11 8941156 8941339 -112902517 + B2_Mm2 SINE B2 2 191 -4 6 653 23 33 0 0 chr11 8941675 8941705 -112902151 + AT_rich Low_complexity Low_complexity 1 30 0 6 653 347 321 65 40 chr11 8942048 8942295 -112901561 + L1Md_F2 LINE L1 123 375 -5692 6 653 1997 130 15 5 chr11 8942561 8942995 -112900861 + L1Md_F2 LINE L1 5300 5615 -559 6 653 8609 29 0 1 chr11 8942995 8943991 -112899865 + L1Md_F2 LINE L1 5587 6581 -1 6 653 24 0 0 0 chr11 8943992 8944016 -112899840 + AT_rich Low_complexity Low_complexity 1 24 0 6 653 507 325 0 12 chr11 8944170 8944335 -112899521 + RSINE1 SINE B4 3 165 0 6 653 515 225 167 0 chr11 8944822 8944942 -112898914 + B3A SINE B2 1 140 -58 6 653 1081 126 116 5 chr11 8944948 8945147 -112898709 + URR1A DNA MER1_type 6 226 0 6 653 346 235 11 34 chr11 8945147 8945232 -112898624 + B3 SINE B2 131 213 -3 6 653 318 115 0 0 chr11 8945711 8945772 -112898084 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 653 638 283 166 39 chr11 8945791 8946232 -112897624 + L1MA9 LINE L1 5815 6311 -1 6 653 1222 76 99 0 chr11 8946465 8946637 -112897219 + B2_Mm1t SINE B2 1 189 -4 6 653 279 175 0 0 chr11 8947449 8947506 -112896350 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 653 359 245 64 0 chr11 8948191 8948285 -112895571 - B1F2 SINE Alu -45 104 5 6 653 372 22 0 0 chr11 8948286 8948331 -112895525 + (TTG)n Simple_repeat Simple_repeat 2 46 0 6 653 189 0 0 0 chr11 8948333 8948354 -112895502 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 653 261 0 0 0 chr11 8950092 8950121 -112893735 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 653 692 299 126 3 chr11 8950837 8951162 -112892694 - MLT2D LTR ERVL -49 365 1 6 653 458 75 15 0 chr11 8951419 8951486 -112892370 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 653 618 14 0 0 chr11 8951486 8951556 -112892300 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 653 180 245 0 0 chr11 8952298 8952351 -112891505 + GA-rich Low_complexity Low_complexity 1 53 0 6 653 443 273 42 28 chr11 8954449 8954592 -112889264 + RSINE1 SINE B4 5 149 -16 6 653 291 226 8 172 chr11 8955422 8955550 -112888306 + MT2B LTR ERVL 152 258 -343 6 653 651 180 0 76 chr11 8955446 8955578 -112888278 + B1_Mur1 SINE Alu 12 133 -16 6 653 326 117 0 32 chr11 8955578 8955640 -112888216 + (TTTTTG)n Simple_repeat Simple_repeat 2 61 0 6 653 263 170 0 0 chr11 8955684 8955731 -112888125 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 653 573 166 0 0 chr11 8955734 8955879 -112887977 + GA-rich Low_complexity Low_complexity 2 146 0 6 653 247 288 14 43 chr11 8956241 8956379 -112887477 + GA-rich Low_complexity Low_complexity 4 137 0 6 653 256 345 59 5 chr11 8958370 8958574 -112885282 - L1ME1 LINE L1 -10 6169 5955 6 653 1469 221 6 6 chr11 8958591 8958909 -112884947 + MTD LTR MaLR 12 329 -90 6 653 223 228 0 34 chr11 8959004 8959063 -112884793 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 6 653 694 153 179 32 chr11 8959365 8959596 -112884260 - BGLII_B LTR ERVK -437 255 1 6 653 201 39 0 0 chr11 8960167 8960193 -112883663 + (CAGCC)n Simple_repeat Simple_repeat 2 27 0 6 653 24 0 0 0 chr11 8960899 8960923 -112882933 + AT_rich Low_complexity Low_complexity 1 24 0 6 653 1020 204 23 27 chr11 8961394 8961656 -112882200 + RMER10B LTR ERVL 5 265 -133 6 653 861 159 34 67 chr11 8961647 8961856 -112882000 + RMER10B LTR ERVL 197 398 0 6 653 22 70 0 0 chr11 8962737 8962780 -112881076 + AT_rich Low_complexity Low_complexity 1 43 0 6 653 351 0 0 0 chr11 8962787 8962826 -112881030 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 653 393 39 0 0 chr11 8962828 8962879 -112880977 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 6 653 546 274 137 102 chr11 8962885 8963130 -112880726 - L1M2 LINE L1 -530 5770 5485 6 653 225 0 0 0 chr11 8963130 8963155 -112880701 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 653 546 274 137 102 chr11 8963155 8963167 -112880689 - L1M2 LINE L1 -816 5484 5484 6 653 710 230 118 0 chr11 8963167 8963354 -112880502 - B3 SINE B2 -3 213 5 6 653 546 274 137 102 chr11 8963354 8963534 -112880322 - L1M2 LINE L1 -816 5484 5317 6 653 395 274 10 19 chr11 8963544 8963648 -112880208 - B1F SINE Alu 0 149 47 6 653 257 312 17 52 chr11 8963546 8963661 -112880195 - ID_B1 SINE B4 0 224 114 6 653 565 259 5 30 chr11 8963673 8963876 -112879980 - L1M2 LINE L1 -842 5301 5104 6 653 315 0 0 0 chr11 8963880 8963915 -112879941 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 653 1006 121 18 12 chr11 8963946 8964113 -112879743 - L1Md_F2 LINE L1 0 6582 6415 6 653 892 198 122 0 chr11 8964113 8964310 -112879546 - URR1A DNA MER1_type -4 222 2 6 653 430 293 66 70 chr11 8964296 8964509 -112879347 + B3A SINE B2 3 214 -2 6 653 617 266 36 31 chr11 8965942 8966167 -112877689 - L1M2 LINE L1 -1364 4776 4551 6 653 1316 276 158 16 chr11 8966238 8966339 -112877517 - L1M2 LINE L1 -2206 3937 3830 6 653 330 26 0 0 chr11 8966339 8966378 -112877478 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 653 1316 276 158 16 chr11 8966378 8967024 -112876832 - L1M2 LINE L1 -2314 3829 3084 6 653 321 26 0 0 chr11 8967373 8967411 -112876445 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 653 1179 61 0 20 chr11 8968049 8968199 -112875657 - B1_Mus1 SINE Alu 0 148 2 7 653 27 29 0 0 chr11 8968271 8968305 -112875551 + AT_rich Low_complexity Low_complexity 1 34 0 7 653 222 163 0 23 chr11 8968924 8968968 -112874888 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 653 36 23 0 0 chr11 8969066 8969109 -112874747 + AT_rich Low_complexity Low_complexity 1 43 0 7 653 319 326 0 46 chr11 8969643 8969794 -112874062 + ORR1E LTR MaLR 7 150 -209 7 653 475 286 29 96 chr11 8969964 8970173 -112873683 + B4 SINE B4 2 196 -96 7 653 565 217 0 80 chr11 8970065 8970215 -112873641 + B1_Mur1 SINE Alu 12 149 0 7 653 348 299 64 21 chr11 8970216 8970356 -112873500 + B4 SINE B4 81 226 -66 7 653 579 274 100 67 chr11 8970367 8970533 -112873323 + B3A SINE B2 1 176 -19 7 653 4609 41 0 0 chr11 8970533 8971071 -112872785 + L1Md_F2 LINE L1 6030 6567 -15 7 653 376 274 100 67 chr11 8971071 8971084 -112872772 + B2_Mm2 SINE B2 177 186 -9 7 653 280 191 0 60 chr11 8971200 8971267 -112872589 + ORR1E LTR MaLR 308 370 -9 7 653 1091 249 83 21 chr11 8971442 8971779 -112872077 - ORR1D2 LTR MaLR -8 362 5 7 653 276 276 0 87 chr11 8972015 8972130 -112871726 + MT2A LTR ERVL 106 210 -323 7 653 342 0 0 0 chr11 8972417 8972455 -112871401 + (CATA)n Simple_repeat Simple_repeat 4 41 0 7 653 1062 270 157 25 chr11 8972748 8973353 -112870503 + L1MC3 LINE L1 4761 5445 -899 7 653 361 300 125 18 chr11 8973459 8973683 -112870173 + L1MC3 LINE L1 5714 5961 -1824 7 653 244 348 79 6 chr11 8973791 8973956 -112869900 + L1MC3 LINE L1 6132 6308 -25 7 653 1153 75 0 0 chr11 8973983 8974129 -112869727 + B1_Mus2 SINE Alu 2 147 0 7 653 401 278 15 31 chr11 8974652 8974782 -112869074 + B4A SINE B4 8 135 -157 7 653 461 248 44 52 chr11 8974812 8974948 -112868908 + B4A SINE B4 135 269 -23 7 653 348 24 0 0 chr11 8974948 8974989 -112868867 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 653 3381 36 10 0 chr11 8975425 8975817 -112868039 + MTA_Mm LTR MaLR 1 396 0 7 653 279 218 145 79 chr11 8976828 8977127 -112866729 + L1MC4 LINE L1 1025 1387 -4828 7 653 539 312 44 56 chr11 8977260 8977288 -112866568 + B3A SINE B2 1 28 -170 7 653 1243 184 73 118 chr11 8977288 8977302 -112866554 - RMER17C LTR ERVK 0 410 397 7 653 804 50 0 0 chr11 8977302 8977403 -112866453 + (GGA)n Simple_repeat Simple_repeat 3 103 0 7 653 1243 184 73 118 chr11 8977403 8977813 -112866043 - RMER17C LTR ERVK -14 396 6 7 653 539 316 48 57 chr11 8977813 8977987 -112865869 + B3A SINE B2 22 204 -12 7 653 491 248 149 0 chr11 8978039 8978160 -112865696 + B1_Mur2 SINE Alu 3 141 -8 7 653 360 111 0 0 chr11 8978160 8978214 -112865642 + (CAG)n Simple_repeat Simple_repeat 1 54 0 7 653 269 161 36 0 chr11 8978233 8978289 -112865567 + B4A SINE B4 1 58 -234 7 653 37050 34 3 1 chr11 8978360 8983538 -112860318 + L1Md_T LINE L1 396 5586 -297 7 653 8523 33 2 0 chr11 8983538 8984531 -112859325 + L1Md_T LINE L1 5587 6581 -1 7 653 226 305 200 0 chr11 8984580 8984675 -112859181 + B4 SINE B4 117 230 -62 7 653 731 33 11 0 chr11 8984675 8984765 -112859091 + L1_Mus2 LINE L1 5677 5767 -869 7 653 2928 39 71 25 chr11 8984765 8985158 -112858698 - IAPLTR2_Mm LTR ERVK 0 411 1 7 653 6451 66 12 11 chr11 8985160 8985988 -112857868 - IAPEz-int LTR ERVK -2 6479 5651 7 653 2826 53 0 3 chr11 8985981 8986324 -112857532 - IAPEz-int LTR ERVK -4781 1700 1359 7 653 5012 66 5 28 chr11 8986324 8986994 -112856862 - IAPEz-int LTR ERVK -5819 662 9 7 653 2994 35 179 0 chr11 8986995 8987398 -112856458 - IAPLTR2_Mm LTR ERVK 0 475 1 7 653 6035 70 20 33 chr11 8987398 8988214 -112855642 + L1_Mus2 LINE L1 5762 6566 0 7 653 460 190 224 0 chr11 8988225 8988341 -112855515 + B1_Mus1 SINE Alu 1 142 -6 7 653 324 273 0 13 chr11 8988352 8988430 -112855426 + B4 SINE B4 214 290 -2 7 653 980 206 7 19 chr11 8988861 8989085 -112854771 - ORR1D1 LTR MaLR -149 221 3 7 653 230 269 27 18 chr11 8989491 8989601 -112854255 + L1M2 LINE L1 1840 1950 -4899 7 653 4341 30 0 2 chr11 8989686 8990180 -112853676 - MT2_Mm LTR ERVL 0 493 1 7 653 1008 302 102 86 chr11 8990210 8992202 -112851654 + L1M2 LINE L1 2153 4206 -2639 7 653 845 138 7 0 chr11 8992554 8992699 -112851157 + (TA)n Simple_repeat Simple_repeat 2 147 0 7 653 351 0 0 0 chr11 8992734 8992773 -112851083 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 653 790 212 109 0 chr11 8992785 8992978 -112850878 - B3 SINE B2 0 216 3 7 653 287 244 73 0 chr11 8993523 8993605 -112850251 + RLTR42-int LTR ERVK 1694 1781 -3741 7 653 796 174 0 46 chr11 8993626 8993777 -112850079 + B1_Mus2 SINE Alu 3 146 -1 7 653 1996 160 35 16 chr11 8996653 8997024 -112846832 - ORR1B1 LTR MaLR -8 386 9 7 653 6917 180 48 8 chr11 8997024 8997345 -112846511 - ORR1B1-int LTR MaLR -2 1507 1194 7 653 2455 171 82 34 chr11 8997345 8997848 -112846008 - RLTR11A2 LTR ERVK 0 527 1 7 653 6917 180 48 8 chr11 8997848 8998975 -112844881 - ORR1B1-int LTR MaLR -316 1193 2 7 653 1656 180 91 8 chr11 8998976 8999329 -112844527 - ORR1B1 LTR MaLR 0 394 13 7 653 613 36 24 0 chr11 8999331 8999415 -112844441 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 7 653 2472 87 16 0 chr11 8999499 8999821 -112844035 + ORR1A2 LTR MaLR 1 327 0 7 653 995 56 7 20 chr11 8999854 9000000 -112843856 - L1Md_F3 LINE L1 -2 6582 6439 7 653 38908 42 1 7 chr11 9000000 9006044 -112837812 - L1Md_F3 LINE L1 -146 6438 434 1 653 17933 138 15 29 chr11 9006036 9006912 -112836944 - L1VL2 LINE L1 -1595 4288 3456 2 653 1117 89 7 0 chr11 9006912 9007058 -112836798 - B1_Mus2 SINE Alu 0 147 1 3 653 17933 139 12 26 chr11 9007058 9009938 -112833918 - L1VL2 LINE L1 -2428 3455 584 2 653 1920 174 38 29 chr11 9009938 9010284 -112833572 + BGLII_B LTR ERVK 17 366 -75 4 653 2806 87 50 0 chr11 9010284 9010663 -112833193 + MTB LTR MaLR 3 400 0 5 653 1920 174 38 29 chr11 9010663 9010737 -112833119 + BGLII_B LTR ERVK 367 441 0 4 653 751 189 8 0 chr11 9010803 9010930 -112832926 + B1_Mur3 SINE Alu 1 128 -21 6 653 435 38 0 0 chr11 9010936 9010989 -112832867 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 653 265 312 69 11 chr11 9011040 9011228 -112832628 + L1MD2 LINE L1 2947 3145 -3001 8 653 1244 81 0 0 chr11 9011379 9011552 -112832304 + B2_Mm2 SINE B2 1 173 -22 9 653 384 101 361 0 chr11 9011584 9011692 -112832164 + B2_Mm2 SINE B2 47 193 -2 1 653 267 237 0 38 chr11 9011693 9011772 -112832084 + L1M5 LINE L1 3200 3275 -2871 1 653 376 266 60 42 chr11 9011950 9012166 -112831690 + L1MD2 LINE L1 4341 4560 -1586 8 653 518 287 199 16 chr11 9012169 9012481 -112831375 - MER31A LTR ERV1 -8 477 109 1 653 235 227 87 43 chr11 9012988 9013103 -112830753 + L1MD2 LINE L1 4581 4700 -1446 8 653 842 309 95 57 chr11 9013733 9014564 -112829292 + L1MD2 LINE L1 4835 5704 -655 8 653 661 199 7 40 chr11 9014564 9014716 -112829140 - B1_Mur2 SINE Alu -2 147 1 1 653 549 330 108 70 chr11 9014716 9015118 -112828738 + L1MD2 LINE L1 5705 6128 -231 8 653 789 11 0 0 chr11 9015274 9015364 -112828492 + (GAA)n Simple_repeat Simple_repeat 2 91 0 1 653 1465 138 96 49 chr11 9015601 9015966 -112827890 - RMER10B LTR ERVL -15 383 2 1 653 45 0 0 0 chr11 9016589 9016634 -112827222 + AT_rich Low_complexity Low_complexity 1 45 0 1 653 253 170 0 0 chr11 9016696 9016743 -112827113 + RMER10B LTR ERVL 60 106 -336 1 653 786 134 0 0 chr11 9016797 9016924 -112826932 + (TCCC)n Simple_repeat Simple_repeat 3 129 0 1 653 484 268 33 44 chr11 9016926 9017106 -112826750 + RMER10B LTR ERVL 194 371 -27 1 653 261 0 0 0 chr11 9020031 9020060 -112823796 + (T)n Simple_repeat Simple_repeat 1 29 0 1 653 900 175 169 5 chr11 9020363 9020547 -112823309 - B3 SINE B2 -2 214 1 2 653 545 246 61 71 chr11 9020980 9021177 -112822679 - B3A SINE B2 -3 195 1 2 653 201 108 0 0 chr11 9021773 9021810 -112822046 + (T)n Simple_repeat Simple_repeat 1 37 0 2 653 1153 68 0 7 chr11 9021812 9021960 -112821896 - B1_Mus1 SINE Alu 0 148 2 2 653 253 273 12 49 chr11 9022536 9022617 -112821239 - PB1 SINE Alu -21 106 29 2 653 339 332 91 88 chr11 9022782 9023135 -112820721 - ORR1E LTR MaLR 0 359 6 2 653 429 218 36 18 chr11 9024335 9024447 -112819409 + RSINE1 SINE B4 16 129 -36 2 653 225 65 0 0 chr11 9024618 9024649 -112819207 + (CCCCCA)n Simple_repeat Simple_repeat 4 34 0 2 653 232 291 0 0 chr11 9024736 9024791 -112819065 + ID4 SINE ID 6 60 -23 2 653 355 62 0 58 chr11 9025385 9025454 -112818402 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 653 237 254 48 0 chr11 9026669 9026732 -112817124 + ID_B1 SINE B4 91 156 -68 3 653 201 154 0 0 chr11 9027279 9027318 -112816538 + (TCTCTG)n Simple_repeat Simple_repeat 6 44 0 3 653 283 308 66 0 chr11 9027410 9027501 -112816355 + B1F SINE Alu 1 97 -52 3 653 452 273 93 7 chr11 9027562 9027713 -112816143 + ID_B1 SINE B4 57 220 -4 3 653 243 322 176 7 chr11 9028244 9028397 -112815459 + MER58A DNA MER1_type 44 222 -2 3 653 1148 150 153 8 chr11 9028530 9028779 -112815077 - Lx3C LINE L1 -1 6975 6691 3 653 735 168 184 6 chr11 9028815 9028989 -112814867 - B3 SINE B2 -6 210 6 3 653 298 260 0 37 chr11 9030236 9030344 -112813512 - L1MA6 LINE L1 -125 6175 6072 3 653 4254 25 16 0 chr11 9030516 9031001 -112812855 - MT2_Mm LTR ERVL 0 493 1 3 653 183 259 93 0 chr11 9031518 9031572 -112812284 - MER5A DNA MER1_type -103 86 28 3 653 297 0 0 0 chr11 9032513 9032546 -112811310 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 653 393 296 111 10 chr11 9032897 9033105 -112810751 - Tigger7 DNA MER2_type -7 2484 2256 4 653 249 33 0 0 chr11 9036298 9036328 -112807528 + (GGGTG)n Simple_repeat Simple_repeat 2 31 0 4 653 28 0 0 0 chr11 9038024 9038052 -112805804 + AT_rich Low_complexity Low_complexity 1 28 0 4 653 5332 15 0 0 chr11 9038055 9038647 -112805209 - L1Md_A LINE L1 -2 6580 5989 4 653 1553 186 136 0 chr11 9039607 9039930 -112803926 + MTC LTR MaLR 1 367 -54 4 653 2004 149 61 66 chr11 9039930 9040326 -112803530 + ORR1B1 LTR MaLR 1 394 0 4 653 242 200 186 12 chr11 9041441 9041527 -112802329 - MLT1B LTR MaLR -71 319 219 4 653 233 397 0 8 chr11 9041750 9041872 -112801984 + RMER1C Other Other 17 137 -1205 4 653 1108 234 11 65 chr11 9041933 9042208 -112801648 + RMER1C Other Other 731 990 -352 4 653 1321 212 23 75 chr11 9042231 9042618 -112801238 + RMER1C Other Other 974 1340 -2 4 653 689 303 16 5 chr11 9042790 9042979 -112800877 + ID_B1 SINE B4 10 200 -24 5 653 499 29 29 0 chr11 9042984 9043053 -112800803 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 5 653 306 0 0 0 chr11 9043055 9043089 -112800767 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 5 653 963 214 55 0 chr11 9043206 9043407 -112800449 - B3 SINE B2 -1 215 4 5 653 450 0 0 0 chr11 9043785 9043835 -112800021 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 654 425 273 53 63 chr11 9044296 9044503 -112799353 + MER31-int LTR ERV1 1721 1925 -3011 5 654 2271 123 9 0 chr11 9044659 9044985 -112798871 - ORR1A4 LTR MaLR 0 329 1 5 654 1088 97 7 0 chr11 9045024 9045169 -112798687 + B1_Mus2 SINE Alu 2 147 0 5 654 1929 136 17 69 chr11 9045218 9045565 -112798291 + ORR1A4 LTR MaLR 1 329 0 5 654 1744 229 102 107 chr11 9045906 9046249 -112797607 + RMER20B LTR ERVK 10 398 -229 5 654 2203 128 20 41 chr11 9046249 9046640 -112797216 + RLTR9A2 LTR ERVK 1 383 0 6 654 1744 229 102 107 chr11 9046640 9046893 -112796963 + RMER20B LTR ERVK 399 603 -24 5 654 3272 80 37 16 chr11 9047085 9047571 -112796285 + LTRIS4 LTR ERV1 1 496 -11 6 654 22 0 0 0 chr11 9047571 9047593 -112796263 + AT_rich Low_complexity Low_complexity 1 22 0 6 654 309 272 137 26 chr11 9048312 9048429 -112795427 - MTE2b LTR MaLR 0 379 250 6 654 702 216 61 61 chr11 9048527 9048724 -112795132 + B3A SINE B2 2 198 0 6 654 558 242 76 6 chr11 9049211 9049369 -112794487 - MTE2b LTR MaLR -148 231 63 6 654 216 0 0 0 chr11 9049447 9049471 -112794385 + (T)n Simple_repeat Simple_repeat 1 24 0 6 654 579 322 40 7 chr11 9050988 9051260 -112792596 + MER31-int LTR ERV1 2796 3076 -1860 6 654 1594 277 105 72 chr11 9051500 9052302 -112791554 + Lx8 LINE L1 6644 7471 -2 6 654 21 36 0 0 chr11 9052302 9052330 -112791526 + AT_rich Low_complexity Low_complexity 1 28 0 6 654 7451 50 1 5 chr11 9053891 9054789 -112789067 + L1_Mus2 LINE L1 5672 6566 0 6 654 3017 163 89 8 chr11 9054798 9055391 -112788465 + L1Md_F LINE L1 491 1108 -5411 7 654 2966 138 45 6 chr11 9055388 9056201 -112787655 - L1Md_F LINE L1 -2443 1374 494 7 654 1891 283 82 38 chr11 9056212 9056917 -112786939 - Lx8 LINE L1 0 7473 6738 7 654 279 333 5 63 chr11 9056999 9057188 -112786668 + RMER4A LTR ERVK 8 185 -281 7 654 313 346 0 0 chr11 9059413 9059517 -112784339 - Lx8 LINE L1 -1159 6314 6211 7 654 258 56 0 0 chr11 9059781 9059817 -112784039 + (A)n Simple_repeat Simple_repeat 1 36 0 7 654 228 242 0 0 chr11 9059833 9059895 -112783961 + A-rich Low_complexity Low_complexity 1 62 0 7 654 313 253 161 33 chr11 9059975 9060155 -112783701 + LTR37B LTR ERV1 8 210 -258 7 654 1054 281 47 29 chr11 9060949 9061290 -112782566 + MTEa LTR MaLR 9 355 -24 7 654 239 252 101 55 chr11 9061290 9061399 -112782457 - RLTR9A LTR ERVK 0 368 255 7 654 227 313 50 50 chr11 9062323 9062464 -112781392 - Charlie2b DNA MER1_type 0 2782 2642 7 654 369 248 25 22 chr11 9062989 9063167 -112780689 + L1_Rod LINE L1 5128 5352 -794 8 654 590 262 110 53 chr11 9063151 9063469 -112780387 + L1MA4 LINE L1 5675 6010 -173 8 654 24 0 0 0 chr11 9063594 9063618 -112780238 + AT_rich Low_complexity Low_complexity 1 24 0 8 654 282 304 67 34 chr11 9063623 9063639 -112780217 + B4 SINE B4 76 95 -197 8 654 630 203 43 7 chr11 9063639 9063778 -112780078 + B1F SINE Alu 3 146 -3 8 654 202 302 16 16 chr11 9065294 9065358 -112778498 + MER5A DNA MER1_type 19 82 -107 8 654 910 257 12 112 chr11 9065400 9065738 -112778118 + MTEb LTR MaLR 58 361 -18 8 654 250 169 85 0 chr11 9066122 9066181 -112777675 + MLT1A1 LTR MaLR 345 408 0 8 654 252 0 0 0 chr11 9066711 9066739 -112777117 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 654 579 342 211 7 chr11 9066888 9067425 -112776431 - L1MD2 LINE L1 -185 6057 5406 8 654 464 280 80 5 chr11 9067798 9067985 -112775871 - L1MD2 LINE L1 -800 5346 5146 8 654 1511 193 83 12 chr11 9068172 9068508 -112775348 - ORR1D1 LTR MaLR -14 360 1 9 654 457 236 64 0 chr11 9068511 9068621 -112775235 - B1F2 SINE Alu -24 125 9 9 654 381 363 73 48 chr11 9068685 9069041 -112774815 - L1MEf LINE L1 -5245 955 591 9 654 13891 77 16 23 chr11 9069051 9071779 -112772077 - L1_Mus2 LINE L1 0 6566 3857 9 654 29 28 0 0 chr11 9072360 9072396 -112771460 + AT_rich Low_complexity Low_complexity 1 36 0 9 654 778 319 70 14 chr11 9073616 9073972 -112769884 + MTEb LTR MaLR 4 379 0 9 654 274 61 41 0 chr11 9074897 9074946 -112768910 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 9 654 1133 43 57 0 chr11 9074947 9075087 -112768769 - B1_Mus1 SINE Alu 0 148 1 9 654 742 196 0 0 chr11 9075471 9075609 -112768247 - B1_Mur1 SINE Alu 0 149 12 9 654 806 239 53 14 chr11 9075764 9075972 -112767884 + MTD LTR MaLR 18 233 -186 9 654 1347 171 50 30 chr11 9076554 9076856 -112767000 - RMER13B LTR ERVK 0 908 601 1 654 2811 142 19 0 chr11 9076845 9077308 -112766548 - RMER13B LTR ERVK -436 472 1 1 654 234 209 0 0 chr11 9079157 9079200 -112764656 + MTC-int LTR MaLR 955 997 -261 1 654 1495 72 0 10 chr11 9079790 9079985 -112763871 - B2_Mm2 SINE B2 0 195 3 1 654 577 141 156 43 chr11 9080731 9080872 -112762984 + MTD LTR MaLR 221 377 -42 1 654 306 336 53 57 chr11 9080921 9081148 -112762708 - MLT1B LTR MaLR -10 380 155 1 654 2050 160 56 5 chr11 9081158 9081548 -112762308 - MTC LTR MaLR -9 412 3 1 654 265 300 98 16 chr11 9081562 9081684 -112762172 - MLT1B LTR MaLR -239 135 4 1 654 2048 185 52 3 chr11 9082962 9083326 -112760530 + RLTR14 LTR ERV1 1 382 0 1 654 854 297 64 8 chr11 9083731 9084088 -112759768 - L1MB7 LINE L1 -22 6162 5786 1 654 1001 290 37 30 chr11 9084298 9084745 -112759111 + MLT2B4 LTR ERVL 3 495 -61 1 654 436 192 18 71 chr11 9084791 9084897 -112758959 - MTE2a LTR MaLR -2 377 278 1 654 990 248 69 48 chr11 9084897 9085231 -112758625 + RLTR14 LTR ERV1 1 341 -41 1 654 693 294 41 142 chr11 9085272 9085589 -112758267 - MTE2a LTR MaLR -93 286 2 1 654 434 18 18 0 chr11 9085593 9085648 -112758208 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1 654 1515 313 104 12 chr11 9085851 9086572 -112757284 + ERVL-B4-int LTR ERVL 4 790 -4924 1 654 630 286 70 27 chr11 9086623 9086882 -112756974 + ERVL-B4-int LTR ERVL 937 1206 -4508 1 654 2998 37 3 0 chr11 9086908 9087261 -112756595 + L1Md_F2 LINE L1 5233 5586 -297 1 654 7415 52 53 13 chr11 9087261 9088214 -112755642 + L1Md_F2 LINE L1 5587 6578 -4 1 654 315 0 0 0 chr11 9088220 9088255 -112755601 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 654 1055 289 77 21 chr11 9088259 9088595 -112755261 + ERVL-B4-int LTR ERVL 1197 1551 -4163 1 654 491 250 38 8 chr11 9088593 9088726 -112755130 + ERVL-B4-int LTR ERVL 5035 5171 -543 1 654 515 335 106 7 chr11 9089114 9089397 -112754459 + MLT2B4 LTR ERVL 6 316 -240 1 654 550 191 0 18 chr11 9089414 9089463 -112754393 + polypyrimidine Low_complexity Low_complexity 115 163 0 1 654 902 128 0 11 chr11 9089463 9089645 -112754211 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 654 550 191 0 18 chr11 9089645 9089701 -112754155 + polypyrimidine Low_complexity Low_complexity 61 114 0 1 654 994 106 0 16 chr11 9089701 9089884 -112753972 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 654 550 191 0 18 chr11 9089884 9089942 -112753914 + polypyrimidine Low_complexity Low_complexity 3 60 0 1 654 207 264 0 0 chr11 9089962 9090053 -112753803 + CT-rich Low_complexity Low_complexity 3 93 0 1 654 26 0 0 0 chr11 9090114 9090140 -112753716 + AT_rich Low_complexity Low_complexity 1 26 0 1 654 324 330 26 17 chr11 9090150 9090267 -112753589 - PB1D7 SINE Alu -1 119 2 1 654 245 325 32 40 chr11 9090272 9090397 -112753459 + MLT2B4 LTR ERVL 359 482 -74 1 654 486 253 204 11 chr11 9091038 9091214 -112752642 + B4 SINE B4 36 245 -47 1 654 477 0 0 0 chr11 9091215 9091268 -112752588 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 654 555 273 0 8 chr11 9093448 9093581 -112750275 + ID_B1 SINE B4 87 218 -6 1 654 207 0 0 0 chr11 9094506 9094529 -112749327 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 654 627 177 9 9 chr11 9094544 9094658 -112749198 - B1_Mur2 SINE Alu -19 130 17 1 654 541 303 51 36 chr11 9094666 9094861 -112748995 - B3A SINE B2 0 198 1 1 654 299 96 19 0 chr11 9095285 9095337 -112748519 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 654 972 108 0 0 chr11 9095337 9095552 -112748304 + (GA)n Simple_repeat Simple_repeat 1 215 0 1 654 784 284 48 35 chr11 9095564 9095794 -112748062 - B4A SINE B4 -55 237 5 1 654 1251 251 55 16 chr11 9096081 9096446 -112747410 + MTEb LTR MaLR 1 379 0 1 654 217 220 0 20 chr11 9096473 9096524 -112747332 + CT-rich Low_complexity Low_complexity 2 51 0 1 654 216 0 0 0 chr11 9097784 9097808 -112746048 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 654 243 235 56 56 chr11 9098935 9098949 -112744907 + B1F2 SINE Alu 60 149 0 1 654 284 171 13 79 chr11 9098949 9099025 -112744831 + ID_B1 SINE B4 154 224 0 1 654 303 265 23 35 chr11 9100751 9100837 -112743019 - PB1D10 SINE Alu 0 117 33 1 654 3437 170 70 8 chr11 9101641 9102286 -112741570 - RLTR17 LTR ERVK -4 688 4 1 654 192 303 105 0 chr11 9103686 9103762 -112740094 + L2a LINE L2 3316 3399 -27 1 654 285 128 0 0 chr11 9104079 9104126 -112739730 + (TCC)n Simple_repeat Simple_repeat 3 49 0 1 654 398 197 12 25 chr11 9104684 9104796 -112739060 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 654 314 23 23 0 chr11 9104796 9104839 -112739017 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 654 398 197 12 25 chr11 9104839 9104887 -112738969 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 654 1876 199 48 18 chr11 9104895 9105288 -112738568 - MTD LTR MaLR -2 417 13 1 654 242 266 12 12 chr11 9105310 9105390 -112738466 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 654 611 302 7 0 chr11 9105854 9106003 -112737853 + RSINE1 SINE B4 3 152 -13 1 654 357 24 0 0 chr11 9106007 9106049 -112737807 + (CAAT)n Simple_repeat Simple_repeat 1 42 0 1 654 4347 57 45 22 chr11 9106150 9106763 -112737093 - L1_Mus2 LINE L1 0 6566 5966 1 654 9110 118 15 31 chr11 9106763 9108839 -112735017 - L1Md_F LINE L1 -3392 2491 442 1 654 622 236 0 11 chr11 9109079 9109202 -112734654 + polypyrimidine Low_complexity Low_complexity 59 180 0 1 654 645 14 0 0 chr11 9109202 9109276 -112734580 + (TTCTC)n Simple_repeat Simple_repeat 2 75 0 1 654 771 69 0 0 chr11 9109280 9109382 -112734474 + (TTTC)n Simple_repeat Simple_repeat 4 105 0 1 654 622 236 0 11 chr11 9109382 9109433 -112734423 + polypyrimidine Low_complexity Low_complexity 8 58 0 1 654 1026 73 81 0 chr11 9109447 9109583 -112734273 - B1_Mus1 SINE Alu 0 148 2 1 654 28 0 0 0 chr11 9109875 9109903 -112733953 + AT_rich Low_complexity Low_complexity 1 28 0 1 654 218 56 0 27 chr11 9110092 9110129 -112733727 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 654 984 166 126 0 chr11 9110168 9110367 -112733489 - URR1A DNA MER1_type 0 226 3 1 654 453 299 36 0 chr11 9111462 9111599 -112732257 + ID_B1 SINE B4 80 221 -3 1 654 213 173 55 55 chr11 9111550 9111605 -112732251 + PB1D7 SINE Alu 66 120 0 1 654 419 241 0 0 chr11 9111805 9111888 -112731968 + ID4 SINE ID 1 83 0 1 654 834 11 0 0 chr11 9112252 9112347 -112731509 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 654 2355 206 78 56 chr11 9112593 9113234 -112730622 + RMER1B Other Other 213 1062 -4 1 654 590 133 34 34 chr11 9113298 9113415 -112730441 + RMER1C Other Other 1224 1340 -2 1 654 309 276 26 0 chr11 9114374 9114450 -112729406 + ID4 SINE ID 2 79 -4 1 654 4016 168 78 3 chr11 9116280 9117008 -112726848 - Lx3C LINE L1 -2 6974 6192 1 654 21 0 0 0 chr11 9117756 9117777 -112726079 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 198 338 27 0 chr11 9118145 9118219 -112725637 - L2b LINE L2 0 3375 3300 1 654 278 262 0 6 chr11 9118458 9118623 -112725233 + CT-rich Low_complexity Low_complexity 1 164 0 1 654 766 218 14 0 chr11 9118623 9118770 -112725086 - B1_Mur3 SINE Alu 0 149 1 1 654 1573 63 16 0 chr11 9119683 9119872 -112723984 - B2_Mm2 SINE B2 -3 192 1 1 654 1034 240 35 0 chr11 9121719 9121919 -112721937 - B3 SINE B2 -9 207 1 1 654 674 262 155 65 chr11 9121985 9122307 -112721549 - MLT1A0 LTR MaLR -14 351 1 1 654 258 194 0 0 chr11 9122816 9122888 -112720968 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 654 229 296 54 40 chr11 9122943 9123017 -112720839 - B3 SINE B2 -131 85 11 1 654 361 312 26 9 chr11 9123029 9123142 -112720714 - PB1D10 SINE Alu 0 117 3 1 654 707 277 34 36 chr11 9123345 9123725 -112720131 - Lx7 LINE L1 -1478 5995 5657 1 654 1285 291 91 81 chr11 9123775 9124691 -112719165 - Lx7 LINE L1 -406 5441 4518 1 654 251 223 0 16 chr11 9124698 9124768 -112719088 - L1_Mur3 LINE L1 -1604 4276 4210 1 654 1008 198 110 87 chr11 9124786 9125167 -112718689 - RMER17C LTR ERVK -20 390 1 1 654 529 209 27 0 chr11 9125169 9125279 -112718577 - L1_Mur3 LINE L1 -1695 4185 4073 1 654 1175 184 95 26 chr11 9125299 9125572 -112718284 - RLTR20B3 LTR ERVK -143 434 143 1 654 1031 258 75 22 chr11 9125577 9125977 -112717879 - Lx7 LINE L1 -2156 3987 3567 1 654 195 69 0 0 chr11 9126736 9126765 -112717091 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1 654 758 262 12 23 chr11 9127013 9127176 -112716680 + B3A SINE B2 2 162 -36 1 654 234 91 0 0 chr11 9127176 9127209 -112716647 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 654 275 213 160 0 chr11 9127483 9127558 -112716298 + MTD LTR MaLR 330 416 -3 1 654 274 186 51 0 chr11 9127561 9127620 -112716236 + MTD-int LTR MaLR 1 62 -1196 1 654 3452 62 0 12 chr11 9127620 9128030 -112715826 + MTB_Mm LTR MaLR 1 405 -2 1 654 3404 149 16 38 chr11 9128035 9128671 -112715185 + MTB_Mm-int LTR MaLR 4 625 -473 1 654 612 63 52 10 chr11 9128673 9128769 -112715087 - MT-int LTR MaLR -169 929 830 1 654 3499 231 99 73 chr11 9128768 9129984 -112713872 + MTD-int LTR MaLR 40 1253 -5 1 654 1151 232 104 81 chr11 9129993 9130178 -112713678 + MTD LTR MaLR 5 207 -212 1 654 2430 53 0 3 chr11 9130178 9130463 -112713393 + L1_Mus1 LINE L1 6283 6566 -1 1 654 1151 232 104 81 chr11 9130463 9130671 -112713185 + MTD LTR MaLR 208 407 -12 1 654 782 361 49 7 chr11 9130915 9131373 -112712483 + MLT-int LTR MaLR 882 1721 -14 1 654 6499 90 1 0 chr11 9131487 9132654 -112711202 + L1_Mus1 LINE L1 4979 6146 -421 1 654 1088 189 58 88 chr11 9132654 9133039 -112710817 - RLTRETN_Mm LTR ERVK 0 409 1 1 654 474 93 25 62 chr11 9133039 9133119 -112710737 - ETnERV2-int LTR ERVK -1 7405 7329 1 654 713 221 139 24 chr11 9133119 9133469 -112710387 - RLTR13D6 LTR ERVK -365 537 118 1 654 8072 199 84 53 chr11 9133484 9135948 -112707908 - MMETn-int LTR ERVK -1801 5443 2356 1 654 748 152 42 60 chr11 9136093 9136325 -112707531 - MMETn-int LTR ERVK -2664 2180 2038 1 654 1512 167 92 0 chr11 9136330 9136623 -112707233 - IAPEY3_LTR LTR ERVK -12 320 1 1 654 3658 172 73 21 chr11 9136623 9137389 -112706467 - MMETn-int LTR ERVK -4105 3301 2496 1 654 545 191 125 16 chr11 9137410 9137538 -112706318 - MMETn-int LTR ERVK -5316 2090 1949 1 654 3557 157 50 121 chr11 9137527 9138484 -112705372 - MMETn-int LTR ERVK -3953 891 3 1 654 1068 179 27 150 chr11 9138487 9138854 -112705002 - RLTRETN_Mm LTR ERVK 0 322 1 1 654 3504 78 0 0 chr11 9138854 9139278 -112704578 + L1_Mus1 LINE L1 6141 6564 -3 1 654 315 296 73 18 chr11 9139803 9139968 -112703888 - L1M5 LINE L1 -1382 4764 4591 1 654 304 253 51 102 chr11 9139996 9140172 -112703684 - L1MB8 LINE L1 -15 6163 5997 1 654 224 175 0 16 chr11 9140261 9140325 -112703531 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 654 200 103 0 49 chr11 9140331 9140372 -112703484 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 1 654 186 156 0 0 chr11 9140473 9140518 -112703338 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 654 1292 247 138 96 chr11 9141294 9142207 -112701649 + RMER12 LTR ERVK 1 1224 -180 2 654 762 123 0 33 chr11 9142215 9142366 -112701490 + CT-rich Low_complexity Low_complexity 4 149 0 2 654 660 294 50 36 chr11 9142367 9142586 -112701270 + RMER12 LTR ERVK 995 1216 -106 2 654 6990 66 26 3 chr11 9142759 9143672 -112700184 - L1_Mus3 LINE L1 -3 6635 5702 2 654 5072 128 39 12 chr11 9143670 9144485 -112699371 + L1_Mus3 LINE L1 4829 5665 -218 2 654 542 286 194 16 chr11 9144485 9144794 -112699062 - RMER5 LTR ERV1 -138 396 33 2 654 1581 6 0 0 chr11 9145294 9145472 -112698384 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 2 654 593 115 16 24 chr11 9145472 9145597 -112698259 + C-rich Low_complexity Low_complexity 4 127 0 2 654 235 141 31 0 chr11 9146144 9146208 -112697648 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 654 425 245 0 12 chr11 9146266 9146427 -112697429 + (CATA)n Simple_repeat Simple_repeat 4 162 0 2 654 339 167 0 0 chr11 9146527 9146593 -112697263 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 654 335 270 22 11 chr11 9147454 9147544 -112696312 - MER74A LTR ERVL -444 114 24 2 654 2187 138 9 40 chr11 9147544 9147891 -112695965 + Lx4A LINE L1 6723 7058 0 2 654 32 0 0 0 chr11 9147891 9147923 -112695933 + AT_rich Low_complexity Low_complexity 1 32 0 2 654 21 0 0 0 chr11 9148182 9148203 -112695653 + AT_rich Low_complexity Low_complexity 1 21 0 2 654 542 245 88 126 chr11 9148217 9148300 -112695556 - B3 SINE B2 -8 208 150 2 654 486 0 0 0 chr11 9148300 9148354 -112695502 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 654 542 245 88 126 chr11 9148354 9148485 -112695371 - B3 SINE B2 -67 149 2 2 654 384 309 108 27 chr11 9148488 9148784 -112695072 - L1MC LINE L1 -1953 4193 3874 2 654 534 204 0 0 chr11 9149297 9149410 -112694446 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 2 654 270 273 91 0 chr11 9150471 9150548 -112693308 + B1F SINE Alu 14 97 -52 2 654 929 141 42 68 chr11 9150619 9150809 -112693047 - B2_Mm2 SINE B2 -9 186 2 2 654 616 248 35 0 chr11 9150947 9151088 -112692768 - B1F2 SINE Alu -1 148 3 2 654 242 320 91 34 chr11 9151730 9151905 -112691951 + MER20 DNA MER1_type 35 219 0 2 654 2292 162 0 0 chr11 9152186 9152544 -112691312 - RMER4A LTR ERVK 0 466 109 2 654 3201 156 63 18 chr11 9152544 9153113 -112690743 - RLTR17 LTR ERVK 0 692 98 2 654 485 132 138 8 chr11 9153114 9153237 -112690619 - RMER4A LTR ERVK -326 140 1 2 654 754 181 12 12 chr11 9153763 9153931 -112689925 + CT-rich Low_complexity Low_complexity 1 168 0 2 654 298 159 0 0 chr11 9153931 9153975 -112689881 + C-rich Low_complexity Low_complexity 4 47 0 2 654 529 295 0 13 chr11 9153975 9154126 -112689730 - ID_B1 SINE B4 0 224 76 2 654 297 332 138 70 chr11 9154126 9154712 -112689144 - L2 LINE L2 -535 2884 2259 2 654 2209 132 28 3 chr11 9154908 9155227 -112688629 - ORR1A2 LTR MaLR 0 327 1 2 654 231 308 54 36 chr11 9155414 9155525 -112688331 + LTR16E1 LTR ERVL 42 154 -384 2 654 21 0 0 0 chr11 9156835 9156856 -112687000 + AT_rich Low_complexity Low_complexity 1 21 0 2 654 3168 49 2 68 chr11 9157987 9158401 -112685455 + RLTR10 LTR ERVK 1 387 -3 2 654 210 37 0 0 chr11 9159355 9159382 -112684474 + (C)n Simple_repeat Simple_repeat 1 27 0 2 654 605 254 39 111 chr11 9159454 9159662 -112684194 - B3A SINE B2 0 198 6 2 654 352 295 105 0 chr11 9159796 9159891 -112683965 - PB1 SINE Alu 0 127 23 2 654 1013 332 35 31 chr11 9161195 9161617 -112682239 + MER44B DNA MER2_type 127 550 0 2 654 621 307 34 6 chr11 9161692 9161869 -112681987 - B3A SINE B2 -14 184 3 2 654 661 342 16 12 chr11 9162263 9162509 -112681347 + MER2 DNA MER2_type 99 345 0 2 654 2453 117 141 0 chr11 9162996 9163364 -112680492 - RLTR9B2 LTR ERVK 0 420 1 2 654 319 294 74 113 chr11 9163657 9163887 -112679969 + MLT1A0 LTR MaLR 64 284 -81 2 654 245 211 18 0 chr11 9164222 9164279 -112679577 + MURVY-LTR LTR ERV1 67 124 -395 2 654 1333 113 55 67 chr11 9164514 9164769 -112679087 + LTRIS2 LTR ERV1 313 564 0 2 654 323 283 54 45 chr11 9164879 9164990 -112678866 - MLT1D LTR MaLR -88 417 306 2 654 498 312 22 0 chr11 9165280 9165418 -112678438 - MER34A LTR ERV1 -420 151 11 2 654 400 319 125 51 chr11 9165434 9165745 -112678111 - MLT1D LTR MaLR -170 335 2 2 654 534 345 38 61 chr11 9166251 9166544 -112677312 - MLT1A LTR MaLR 0 374 89 2 654 201 147 0 0 chr11 9168130 9168164 -112675692 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2 654 1225 75 0 0 chr11 9168164 9168311 -112675545 - B1_Mus2 SINE Alu 0 147 1 2 654 338 200 171 48 chr11 9169566 9169671 -112674185 + PB1 SINE Alu 3 120 -7 2 654 205 261 6 31 chr11 9170155 9170317 -112673539 + (TATG)n Simple_repeat Simple_repeat 1 158 0 2 654 297 167 0 0 chr11 9170417 9170471 -112673385 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 654 348 226 17 47 chr11 9171602 9171774 -112672082 + CT-rich Low_complexity Low_complexity 2 168 0 2 654 425 281 0 0 chr11 9173534 9173623 -112670233 - PB1D10 SINE Alu -27 90 2 2 655 283 288 69 22 chr11 9176208 9176356 -112667500 - MLT1H2 LTR MaLR -23 526 364 2 655 2063 84 0 21 chr11 9178338 9178368 -112665488 - L1_Mus2 LINE L1 -694 5872 5848 2 655 4910 62 10 15 chr11 9178368 9178961 -112664895 - L1_Mus2 LINE L1 0 6566 5977 2 655 25296 147 49 11 chr11 9178961 9182269 -112661587 - L1_Mus2 LINE L1 -36 5847 2416 2 655 180 77 0 0 chr11 9182269 9182295 -112661561 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 655 1171 72 7 0 chr11 9182295 9182434 -112661422 - B1_Mus1 SINE Alu -7 141 2 2 655 25296 129 40 11 chr11 9182434 9184032 -112659824 - L1_Mus2 LINE L1 -3468 2415 770 2 655 1426 147 37 0 chr11 9184459 9184677 -112659179 + URR1A DNA MER1_type 1 226 0 2 655 448 282 50 19 chr11 9185164 9185323 -112658533 + MER5A1 DNA MER1_type 1 164 -2 2 655 487 318 38 74 chr11 9186158 9186687 -112657169 - L1MEc LINE L1 -3242 3077 2568 2 655 225 94 0 0 chr11 9186850 9186882 -112656974 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 655 25 0 0 0 chr11 9187016 9187041 -112656815 + AT_rich Low_complexity Low_complexity 1 25 0 2 655 253 260 0 0 chr11 9187515 9187565 -112656291 - RMER30 DNA MER1_type -151 51 2 2 655 709 236 182 5 chr11 9187992 9188184 -112655672 + URR1A DNA MER1_type 1 226 0 2 655 236 294 15 0 chr11 9188193 9188261 -112655595 - L1MEc LINE L1 -6166 234 166 2 655 360 0 0 0 chr11 9189284 9189324 -112654532 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 655 521 233 22 141 chr11 9189743 9189928 -112653928 - MTEa LTR MaLR 0 379 217 2 655 25 31 0 0 chr11 9195261 9195293 -112648563 + AT_rich Low_complexity Low_complexity 1 32 0 2 655 367 284 14 56 chr11 9195746 9195888 -112647968 - MLT1E3 LTR MaLR -435 189 54 2 655 387 0 0 0 chr11 9196600 9196643 -112647213 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 655 232 241 0 78 chr11 9199188 9199278 -112644578 + L1MA5A LINE L1 6214 6296 -1 2 655 1168 98 0 14 chr11 9200143 9200366 -112643490 + (TCCC)n Simple_repeat Simple_repeat 1 219 0 2 655 256 206 15 31 chr11 9200371 9200436 -112643420 + CT-rich Low_complexity Low_complexity 4 67 0 2 655 248 294 141 0 chr11 9200437 9200529 -112643327 - PB1D7 SINE Alu -1 119 15 2 655 722 255 139 4 chr11 9200652 9200904 -112642952 - L1MA6 LINE L1 -145 6155 5870 2 655 396 0 0 0 chr11 9202411 9202455 -112641401 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 655 186 333 174 30 chr11 9203203 9203370 -112640486 + MIRb SINE MIR 7 197 -71 2 655 711 24 0 0 chr11 9204339 9204424 -112639432 + (GGA)n Simple_repeat Simple_repeat 3 87 0 2 655 7985 58 2 1 chr11 9204445 9205421 -112638435 + L1_Mus2 LINE L1 5589 6565 -1 2 655 342 115 0 0 chr11 9205437 9205489 -112638367 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2 655 923 287 17 81 chr11 9205627 9205923 -112637933 + B4A SINE B4 16 292 0 2 655 333 208 0 0 chr11 9205923 9206000 -112637856 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 655 540 0 0 0 chr11 9206000 9206060 -112637796 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 655 373 145 0 26 chr11 9206498 9206517 -112637339 + polypyrimidine Low_complexity Low_complexity 61 79 0 2 655 1356 67 0 0 chr11 9206517 9206697 -112637159 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 655 373 145 0 26 chr11 9206697 9206755 -112637101 + polypyrimidine Low_complexity Low_complexity 4 60 0 2 655 459 259 0 0 chr11 9206793 9206878 -112636978 - PB1D10 SINE Alu -13 104 20 2 655 646 285 82 68 chr11 9207842 9208271 -112635585 + L1MA4 LINE L1 5762 6196 -104 2 655 1781 219 57 0 chr11 9208281 9208632 -112635224 - ORR1D1 LTR MaLR -1 373 3 2 655 297 75 0 0 chr11 9208690 9208730 -112635126 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 655 564 116 109 25 chr11 9208740 9208856 -112635000 - B1_Mus2 SINE Alu 0 147 13 2 655 628 331 75 20 chr11 9209286 9209634 -112634222 + MER63D DNA AcHobo 5 371 -690 2 655 355 231 14 27 chr11 9209647 9209794 -112634062 + (TCTA)n Simple_repeat Simple_repeat 4 148 0 2 655 2233 113 3 3 chr11 9209832 9210151 -112633705 + ORR1A2 LTR MaLR 1 319 -8 2 655 181 125 35 59 chr11 9210439 9210524 -112633332 + A-rich Low_complexity Low_complexity 3 85 0 2 655 705 316 9 14 chr11 9210535 9210750 -112633106 - Lx7 LINE L1 -463 7233 7020 2 655 603 304 77 8 chr11 9211475 9211795 -112632061 - MTD LTR MaLR -1 418 52 2 655 614 270 79 109 chr11 9213120 9213609 -112630247 - RLTR12B LTR ERVK -61 507 42 2 655 678 293 138 16 chr11 9213663 9214208 -112629648 - L1MA7 LINE L1 -387 5904 5294 2 655 257 162 64 51 chr11 9215634 9215712 -112628144 + Lx5 LINE L1 6970 7048 -2 2 655 183 42 0 0 chr11 9219716 9219740 -112624116 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 655 423 0 0 0 chr11 9219745 9219792 -112624064 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 655 554 309 48 28 chr11 9220347 9220597 -112623259 + MLT2D LTR ERVL 88 342 -72 3 655 333 47 0 0 chr11 9220642 9220685 -112623171 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 655 740 342 64 4 chr11 9220688 9220952 -112622904 - B4A SINE B4 -12 280 1 3 655 201 121 0 0 chr11 9220984 9221017 -112622839 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 3 655 32926 73 5 10 chr11 9221882 9227475 -112616381 - L1Md_F2 LINE L1 0 6582 1033 3 655 1384 127 9 9 chr11 9227466 9227697 -112616159 - L1VL1 LINE L1 -6191 231 1 3 655 329 291 97 107 chr11 9227719 9227915 -112615941 + MTEa LTR MaLR 176 369 -10 3 655 411 309 56 56 chr11 9228335 9228411 -112615445 - MER2 DNA MER2_type -43 302 224 3 655 1729 198 85 10 chr11 9228411 9228799 -112615057 - MTD LTR MaLR -2 417 1 3 655 411 309 56 56 chr11 9228799 9228938 -112614918 - MER2 DNA MER2_type -122 223 87 3 655 200 320 110 0 chr11 9230959 9231059 -112612797 - L2a LINE L2 -69 3357 3247 3 655 600 278 50 6 chr11 9231928 9232109 -112611747 + MamRep434 DNA TcMar 57 245 -181 3 655 351 44 0 0 chr11 9232431 9232476 -112611380 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 655 189 107 0 0 chr11 9232486 9232514 -112611342 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 655 458 331 0 0 chr11 9232525 9232782 -112611074 + (TG)n Simple_repeat Simple_repeat 1 257 0 3 655 824 163 20 0 chr11 9232995 9233142 -112610714 - B1_Mur4 SINE Alu 0 150 1 3 655 641 150 8 0 chr11 9233814 9233947 -112609909 + (TCCA)n Simple_repeat Simple_repeat 3 136 0 3 655 29 70 0 0 chr11 9234312 9234369 -112609487 + AT_rich Low_complexity Low_complexity 1 57 0 3 655 25 31 0 0 chr11 9234570 9234602 -112609254 + AT_rich Low_complexity Low_complexity 1 32 0 3 655 1160 70 0 0 chr11 9236409 9236551 -112607305 + B1_Mus1 SINE Alu 1 142 -6 3 655 198 0 0 0 chr11 9236554 9236576 -112607280 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 655 25 51 0 0 chr11 9236664 9236703 -112607153 + AT_rich Low_complexity Low_complexity 1 39 0 3 655 203 258 89 82 chr11 9237860 9237995 -112605861 + MIR3 SINE MIR 39 174 -34 3 655 288 349 26 0 chr11 9238218 9238370 -112605486 - L5 LINE RTE -1514 751 596 3 655 293 291 39 13 chr11 9238749 9238902 -112604954 - LTR41 LTR ERVL -1 767 611 3 655 882 269 102 93 chr11 9240998 9241613 -112602243 - RLTR18 LTR ERVK -4 508 2 3 655 304 308 0 21 chr11 9241613 9241706 -112602150 + (TCCA)n Simple_repeat Simple_repeat 4 94 0 3 655 563 74 12 0 chr11 9241770 9241851 -112602005 + (TC)n Simple_repeat Simple_repeat 2 83 0 3 655 234 361 12 29 chr11 9241854 9242025 -112601831 + CT-rich Low_complexity Low_complexity 4 171 0 3 655 243 317 113 15 chr11 9242170 9242546 -112601310 - L1MD2 LINE L1 -164 6195 5790 3 655 1678 289 63 70 chr11 9242635 9243332 -112600524 - Lx8 LINE L1 -372 7101 6410 3 655 803 318 27 14 chr11 9243332 9243555 -112600301 - B4A SINE B4 -66 226 1 3 655 1399 250 125 8 chr11 9243857 9244224 -112599632 + MTD LTR MaLR 8 417 -2 3 655 260 139 110 14 chr11 9244450 9244523 -112599333 - Lx9 LINE L1 -2 7642 7563 3 655 1109 36 49 21 chr11 9246645 9246788 -112597068 + B1_Mm SINE Alu 1 147 0 3 655 575 266 75 26 chr11 9247146 9247374 -112596482 + Lx8 LINE L1 7235 7473 0 3 655 203 333 52 41 chr11 9247913 9248085 -112595771 + MIRb SINE MIR 64 237 -31 3 655 490 212 0 0 chr11 9248377 9248462 -112595394 - RSINE1 SINE B4 -73 92 8 3 655 1522 209 127 36 chr11 9248997 9249241 -112594615 - MTD LTR MaLR -8 411 126 3 655 3014 70 2 48 chr11 9249241 9249661 -112594195 + L1_Mus2 LINE L1 6166 6566 0 3 655 1522 209 127 36 chr11 9249661 9249778 -112594078 - MTD LTR MaLR -294 125 17 3 655 5089 72 18 0 chr11 9249847 9250524 -112593332 - L1_Mus1 LINE L1 0 6567 5879 3 655 14765 92 9 7 chr11 9250524 9254738 -112589118 - L1VL1 LINE L1 -607 5276 409 3 655 535 288 99 54 chr11 9255464 9255798 -112588058 - L1MEg LINE L1 -5253 831 483 3 655 27 0 0 0 chr11 9255920 9255947 -112587909 + AT_rich Low_complexity Low_complexity 1 27 0 3 655 746 296 69 41 chr11 9255956 9256319 -112587537 + Lx8 LINE L1 6810 7182 -291 3 655 7062 69 13 8 chr11 9256587 9257696 -112586160 - L1_Mus2 LINE L1 -3 6563 5447 3 655 7106 75 6 13 chr11 9257691 9258830 -112585026 - L1Md_F2 LINE L1 -2 6580 5449 3 655 38856 17 3 6 chr11 9258832 9265484 -112578372 - L1Md_A LINE L1 0 6582 1 3 655 20834 111 17 17 chr11 9265473 9268946 -112574910 - L1Md_F2 LINE L1 -411 5472 1999 3 655 1231 200 0 4 chr11 9268945 9269206 -112574650 - L1VL4 LINE L1 -5532 770 511 3 655 29 0 0 0 chr11 9269246 9269275 -112574581 + AT_rich Low_complexity Low_complexity 1 29 0 3 655 4864 98 10 1 chr11 9269286 9269980 -112573876 - L1_Mus1 LINE L1 -4 6563 5864 3 655 1620 115 0 138 chr11 9269980 9270082 -112573774 + L1_Mm LINE L1 4835 4934 -949 3 655 1262 40 0 0 chr11 9270082 9270230 -112573626 + B1_Mus1 SINE Alu 1 148 0 3 655 1620 115 0 138 chr11 9270230 9270481 -112573375 + L1_Mm LINE L1 4935 5139 -744 3 655 825 89 7 0 chr11 9270475 9270610 -112573246 - MusHAL1 LINE L1 -1930 782 647 3 655 2162 31 0 0 chr11 9270613 9270872 -112572984 + MTA_Mm LTR MaLR 138 396 0 3 655 6687 85 16 7 chr11 9270874 9271853 -112572003 - L1_Mus3 LINE L1 -16 6622 5635 3 655 4190 141 0 10 chr11 9271837 9272556 -112571300 + L1_Mm LINE L1 4068 4779 -1104 3 655 246 156 0 0 chr11 9273048 9273093 -112570763 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 655 493 332 51 100 chr11 9274000 9274311 -112569545 - MLT1B LTR MaLR -3 387 92 3 655 564 358 68 39 chr11 9274324 9274418 -112569438 + B4A SINE B4 3 93 -199 3 655 2516 82 76 13 chr11 9274418 9274800 -112569056 - RLTR9E LTR ERVK 0 409 4 3 655 342 45 0 0 chr11 9274800 9274844 -112569012 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 3 655 564 358 68 39 chr11 9274844 9275027 -112568829 + B4A SINE B4 94 288 -4 3 655 396 0 0 0 chr11 9275028 9275072 -112568784 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 655 232 308 58 8 chr11 9275072 9275193 -112568663 - RMER12 LTR ERVK -474 848 722 3 655 11954 42 1 3 chr11 9275227 9277481 -112566375 - L1Md_F3 LINE L1 -20 6564 4311 3 655 713 117 0 8 chr11 9277568 9277697 -112566159 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 655 263 260 195 0 chr11 9277698 9277775 -112566081 - MLT1B LTR MaLR -298 92 1 3 655 235 338 62 48 chr11 9278766 9278912 -112564944 + MER2B DNA MER2_type 67 214 -122 3 655 189 0 0 0 chr11 9279175 9279196 -112564660 + (A)n Simple_repeat Simple_repeat 1 21 0 3 655 309 51 0 0 chr11 9280125 9280164 -112563692 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 655 2583 64 52 3 chr11 9280643 9280973 -112562883 + ORR1A0 LTR MaLR 1 346 0 3 655 13854 51 12 4 chr11 9280973 9282750 -112561106 + ORR1A0-int LTR MaLR 1 1792 0 3 655 2915 49 0 0 chr11 9282750 9283096 -112560760 + ORR1A0 LTR MaLR 1 346 0 3 655 930 43 0 0 chr11 9288346 9288461 -112555395 + (TATATG)n Simple_repeat Simple_repeat 5 119 0 3 655 22 56 0 0 chr11 9289412 9289448 -112554408 + AT_rich Low_complexity Low_complexity 1 36 0 3 655 234 0 0 0 chr11 9289571 9289597 -112554259 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 655 216 135 0 0 chr11 9289639 9289676 -112554180 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 3 655 882 43 0 0 chr11 9289678 9289793 -112554063 + (CAAAA)n Simple_repeat Simple_repeat 1 115 0 3 655 4325 257 92 36 chr11 9289799 9291042 -112552814 - Lx7 LINE L1 -348 7348 6021 3 655 2539 66 9 0 chr11 9291042 9291377 -112552479 - L1_Mus2 LINE L1 0 6566 6229 3 655 4325 215 24 14 chr11 9291377 9292089 -112551767 - Lx7 LINE L1 -1676 6020 5295 3 655 3741 216 86 40 chr11 9292086 9292235 -112551621 - Lx7 LINE L1 -3376 2504 2322 3 655 673 58 10 10 chr11 9292235 9292339 -112551517 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 3 655 3741 216 86 40 chr11 9292339 9293383 -112550473 - Lx7 LINE L1 -3559 2321 1258 3 655 1031 311 105 88 chr11 9293685 9294287 -112549569 - RLTR18 LTR ERVK 0 616 5 3 655 397 294 42 8 chr11 9294502 9294622 -112549234 - MTE-int LTR MaLR -1 1579 1456 3 655 250 295 101 72 chr11 9294626 9294765 -112549091 - MTE-int LTR MaLR -259 1321 1200 3 655 510 17 0 0 chr11 9294784 9294843 -112549013 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 655 855 132 88 0 chr11 9296184 9296320 -112547536 - B1_Mur4 SINE Alu -1 149 2 3 655 189 0 0 0 chr11 9298110 9298131 -112545725 + (T)n Simple_repeat Simple_repeat 1 21 0 3 655 919 274 112 30 chr11 9300268 9300768 -112543088 + Lx9 LINE L1 7076 7616 -28 3 655 216 0 0 0 chr11 9300795 9300819 -112543037 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 3 655 363 296 14 43 chr11 9301097 9301238 -112542618 - ID_B1 SINE B4 -2 222 86 3 655 742 300 23 5 chr11 9302696 9302914 -112540942 - ID_B1 SINE B4 -2 222 1 3 655 389 232 29 29 chr11 9304980 9305138 -112538718 + B3A SINE B2 1 210 -6 3 655 343 238 50 0 chr11 9305189 9305269 -112538587 + PB1D10 SINE Alu 25 108 -9 3 655 270 56 0 0 chr11 9305280 9305316 -112538540 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 81 1355 214 94 38 chr11 9305720 9306113 -112537743 - MTD LTR MaLR 0 419 5 3 656 910 218 7 93 chr11 9306123 9306401 -112537455 - MTD-int LTR MaLR -2 1256 1003 3 656 753 114 0 0 chr11 9306406 9306520 -112537336 + (TCTA)n Simple_repeat Simple_repeat 3 116 0 3 656 13621 197 40 13 chr11 9306520 9309553 -112534303 - Lx6 LINE L1 -49 7411 4287 3 656 216 67 0 0 chr11 9309553 9309583 -112534273 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 656 13621 170 16 11 chr11 9309583 9310750 -112533106 - Lx6 LINE L1 -1594 4286 3100 3 656 6821 158 140 35 chr11 9310759 9311065 -112532791 - RLTR21 LTR ERVK 0 1572 1304 3 656 441 0 0 0 chr11 9311065 9311114 -112532742 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 656 6821 158 140 35 chr11 9311114 9312229 -112531627 - RLTR21 LTR ERVK -269 1303 1 3 656 7340 216 84 36 chr11 9312229 9315767 -112528089 - Lx6 LINE L1 -2777 3103 17 3 656 1798 176 30 33 chr11 9315776 9316175 -112527681 - MTD-int LTR MaLR -859 399 2 3 656 1920 215 24 19 chr11 9316177 9316594 -112527262 - MTD LTR MaLR 0 419 1 3 656 5342 61 1 0 chr11 9317277 9317949 -112525907 + L1Md_F2 LINE L1 5909 6581 -1 3 656 407 237 186 0 chr11 9318750 9318868 -112524988 + B3A SINE B2 1 140 -58 3 656 516 81 0 0 chr11 9318876 9318950 -112524906 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 656 247 320 13 13 chr11 9319255 9319331 -112524525 + ID SINE ID 8 83 -141 4 656 515 248 55 0 chr11 9319687 9319796 -112524060 + B1_Mur2 SINE Alu 19 133 -16 4 656 402 21 0 0 chr11 9319796 9319843 -112524013 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 4 656 569 158 12 41 chr11 9319903 9320074 -112523782 + Lx9 LINE L1 7479 7644 0 4 656 3245 29 34 0 chr11 9320859 9321242 -112522614 - MTA_Mm LTR MaLR 0 396 1 4 656 7094 40 21 3 chr11 9321370 9322302 -112521554 - L1Md_F3 LINE L1 0 6584 5636 4 656 1126 284 19 44 chr11 9322302 9322666 -112521190 + ORR1D2 LTR MaLR 15 369 -1 4 656 660 327 68 16 chr11 9322743 9322995 -112520861 + MER74A LTR ERVL 239 503 -55 4 656 296 237 9 110 chr11 9324163 9324272 -112519584 + MER53 DNA hAT 96 193 0 4 656 298 222 14 14 chr11 9324200 9324273 -112519583 - MER53 DNA hAT -112 81 9 4 656 1049 84 0 8 chr11 9324908 9325152 -112518704 + (TC)n Simple_repeat Simple_repeat 1 241 0 4 656 369 293 120 0 chr11 9326347 9326497 -112517359 - MLT1B LTR MaLR -27 363 196 4 656 5342 113 30 1 chr11 9326520 9327323 -112516533 - Lx LINE L1 0 6654 5829 4 656 1589 298 49 52 chr11 9327362 9328176 -112515680 - Lx9 LINE L1 -679 6965 6154 4 656 604 234 72 27 chr11 9328258 9328541 -112515315 - Lx9 LINE L1 -1673 5971 5628 4 656 315 355 0 16 chr11 9328543 9328726 -112515130 + Lx9 LINE L1 6949 7128 -516 4 656 236 269 146 17 chr11 9328840 9329018 -112514838 + Lx9 LINE L1 7314 7514 -130 4 656 2081 69 34 34 chr11 9329196 9329494 -112514362 + L1_Mus1 LINE L1 6269 6566 -1 4 656 262 267 37 37 chr11 9329608 9329717 -112514139 - MLT1B LTR MaLR -254 136 28 4 656 232 239 10 71 chr11 9329921 9330020 -112513836 - MER50 LTR ERV1 -363 371 279 4 656 184 271 83 28 chr11 9331041 9331113 -112512743 - L3 LINE CR1 -106 4383 4308 4 656 2284 65 0 0 chr11 9332211 9332501 -112511355 + L1_Mus1 LINE L1 6277 6566 -1 4 656 229 229 0 0 chr11 9332501 9332549 -112511307 + T-rich Low_complexity Low_complexity 1 48 0 4 656 189 107 0 0 chr11 9332868 9332896 -112510960 + (A)n Simple_repeat Simple_repeat 1 28 0 4 656 316 321 89 14 chr11 9333264 9333536 -112510320 + MER2 DNA MER2_type 1 344 -1 4 656 267 306 126 16 chr11 9333651 9333834 -112510022 - L1ME1 LINE L1 -66 6113 5911 4 656 216 0 0 0 chr11 9336581 9336605 -112507251 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 656 320 274 70 49 chr11 9337827 9337969 -112505887 + B1F SINE Alu 2 146 -3 4 656 3560 273 107 16 chr11 9338011 9339047 -112504809 + Lx8 LINE L1 6197 7326 -147 4 656 305 133 48 58 chr11 9339051 9339155 -112504701 + (CAAA)n Simple_repeat Simple_repeat 2 104 0 4 656 191 261 108 11 chr11 9339283 9339376 -112504480 - L2 LINE L2 -2247 1172 1071 4 656 331 358 144 21 chr11 9339836 9340175 -112503681 + L2b LINE L2 2995 3375 0 4 656 207 0 0 0 chr11 9340297 9340320 -112503536 + (T)n Simple_repeat Simple_repeat 1 23 0 4 656 261 0 0 0 chr11 9340864 9340893 -112502963 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 656 1554 266 21 14 chr11 9341686 9342105 -112501751 - Lx7 LINE L1 -396 7300 6879 4 656 249 178 100 0 chr11 9342130 9342220 -112501636 + T-rich Low_complexity Low_complexity 4 102 0 4 656 3134 61 199 12 chr11 9342595 9343026 -112500830 - RLTR1B LTR ERV1 0 512 1 4 656 67901 19 0 0 chr11 9343026 9350581 -112493275 - MMERGLN-int LTR ERV1 0 7556 1 4 656 3152 59 199 12 chr11 9350581 9351012 -112492844 - RLTR1B LTR ERV1 0 512 1 4 656 1073 299 45 40 chr11 9351985 9352361 -112491495 - MTD LTR MaLR -41 378 1 4 656 32923 86 8 11 chr11 9352923 9355135 -112488721 + L1Md_F3 LINE L1 609 2806 -3077 4 656 348 24 0 0 chr11 9355135 9355176 -112488680 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 656 32923 74 6 4 chr11 9355176 9357962 -112485894 + L1Md_F3 LINE L1 2807 5585 -298 4 656 8518 51 3 1 chr11 9357963 9358959 -112484897 + L1Md_F3 LINE L1 5587 6584 0 4 656 3627 66 9 0 chr11 9358959 9359415 -112484441 + L1Md_F2 LINE L1 5126 5585 -298 4 656 8049 73 4 1 chr11 9359416 9360409 -112483447 + L1Md_F2 LINE L1 5587 6582 0 4 656 34 42 0 0 chr11 9361567 9361615 -112482241 + AT_rich Low_complexity Low_complexity 1 48 0 4 656 795 75 0 0 chr11 9361628 9361735 -112482121 + (TA)n Simple_repeat Simple_repeat 1 107 0 4 656 437 339 27 38 chr11 9361762 9361946 -112481910 - Lx8 LINE L1 -84 7389 7208 4 656 472 302 348 12 chr11 9361994 9362346 -112481510 - Lx8 LINE L1 -1 7472 7003 4 656 275 123 35 0 chr11 9363007 9363064 -112480792 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 656 942 101 991 25 chr11 9363105 9363214 -112480642 - RMER1C Other Other -4 1338 1121 4 656 207 69 0 0 chr11 9363214 9363243 -112480613 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 656 942 228 42 34 chr11 9363243 9363471 -112480385 - RMER1C Other Other -222 1120 891 4 656 378 0 0 0 chr11 9363765 9363807 -112480049 + (CTTA)n Simple_repeat Simple_repeat 4 45 0 4 656 456 267 102 78 chr11 9363808 9364052 -112479804 - L1MA9 LINE L1 -1 6311 6062 4 656 419 312 62 0 chr11 9364438 9364550 -112479306 + B1F SINE Alu 1 119 -30 4 656 1446 112 37 21 chr11 9364550 9364816 -112479040 + L1_Mus4 LINE L1 6282 6629 -7 4 656 583 326 86 0 chr11 9365926 9366101 -112477755 + B4 SINE B4 3 192 -100 4 656 1409 281 3 19 chr11 9366756 9367115 -112476741 - MTE2a LTR MaLR -6 373 21 4 656 825 84 0 0 chr11 9367760 9367879 -112475977 + (TCCCC)n Simple_repeat Simple_repeat 3 121 0 4 656 413 200 19 0 chr11 9367917 9368022 -112475834 + CT-rich Low_complexity Low_complexity 3 109 0 4 656 412 229 126 46 chr11 9368326 9368477 -112475379 + Tigger7 DNA MER2_type 2260 2422 -69 4 656 594 346 87 17 chr11 9368469 9368769 -112475087 + MER2 DNA MER2_type 24 344 -1 4 656 180 385 22 0 chr11 9368990 9369081 -112474775 - MIRb SINE MIR -103 165 73 4 656 3498 87 4 69 chr11 9369648 9370168 -112473688 + Lx LINE L1 6167 6652 -2 4 656 3120 72 2 0 chr11 9370202 9370675 -112473181 + L1_Mus2 LINE L1 5466 5939 -627 4 656 341 286 40 12 chr11 9370686 9370846 -112473010 + L1MA4A LINE L1 5770 5938 -362 4 656 1120 194 29 67 chr11 9372872 9373187 -112470669 - Lx7 LINE L1 0 7696 7394 4 656 3005 232 96 8 chr11 9373190 9373562 -112470294 - Lx7 LINE L1 -1270 6426 6021 4 656 558 99 0 0 chr11 9373562 9373653 -112470203 + (TCCA)n Simple_repeat Simple_repeat 1 91 0 4 656 8330 202 71 98 chr11 9373653 9373876 -112469980 - Lx7 LINE L1 -1676 6020 5794 4 656 828 114 0 0 chr11 9373876 9374025 -112469831 + (TC)n Simple_repeat Simple_repeat 1 149 0 4 656 8330 156 31 237 chr11 9374025 9374782 -112469074 - Lx7 LINE L1 -87 5793 5173 4 656 207 0 0 0 chr11 9374782 9374805 -112469051 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 4 656 8330 156 31 237 chr11 9374805 9375448 -112468408 - Lx7 LINE L1 -708 5172 4580 4 656 2259 180 40 2 chr11 9375448 9375843 -112468013 + MTC LTR MaLR 3 412 -9 4 656 8330 156 31 237 chr11 9375843 9376163 -112467693 - Lx7 LINE L1 -708 4579 4284 4 656 441 0 0 0 chr11 9376163 9376212 -112467644 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 656 8330 156 31 237 chr11 9376212 9377031 -112466825 - Lx7 LINE L1 -1597 4283 3480 4 656 561 0 11 53 chr11 9378987 9379081 -112464775 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 4 656 204 308 11 32 chr11 9379196 9379290 -112464566 + CT-rich Low_complexity Low_complexity 1 92 0 4 656 274 306 0 0 chr11 9379727 9379789 -112464067 + MLT1D LTR MaLR 2 63 -442 4 656 235 396 40 0 chr11 9382307 9382456 -112461400 - MIR SINE MIR -19 243 89 4 656 328 298 96 46 chr11 9384815 9385054 -112458802 - L1MB8 LINE L1 -13 6165 5915 4 656 348 267 211 19 chr11 9385076 9385370 -112458486 - L1_Rod LINE L1 -356 5822 5496 4 656 786 286 73 44 chr11 9385466 9385806 -112458050 - Lx8 LINE L1 -2 7471 7122 4 656 1267 300 68 17 chr11 9385781 9386191 -112457665 - Lx8 LINE L1 -827 6646 6216 4 656 4925 100 3 57 chr11 9386196 9386963 -112456893 + L1_Mm LINE L1 4521 5245 -638 4 656 285 304 26 90 chr11 9387117 9387461 -112456395 - L1M4c LINE L1 -3462 2920 2599 4 656 5194 176 61 13 chr11 9387454 9388578 -112455278 - Lx4B LINE L1 -15 6982 5799 4 656 5452 181 31 34 chr11 9388562 9389898 -112453958 - L1_Mur1 LINE L1 -3127 2759 1429 4 656 923 192 39 10 chr11 9389894 9390099 -112453757 - L1VL4 LINE L1 -5559 743 533 4 656 333 79 0 45 chr11 9390304 9390370 -112453486 - L1Md_F2 LINE L1 0 6582 6520 4 656 7621 95 16 8 chr11 9390375 9392279 -112451577 - L1Md_F LINE L1 -3566 2317 399 4 656 561 320 84 69 chr11 9392283 9392789 -112451067 - L1M4c LINE L1 -3815 2567 2055 4 656 1101 93 0 0 chr11 9392789 9392929 -112450927 - B1_Mus2 SINE Alu -7 140 1 4 656 561 321 121 67 chr11 9392929 9393506 -112450350 - L1M4c LINE L1 -4330 2054 1444 4 656 396 0 0 0 chr11 9393539 9393583 -112450273 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 656 21 0 0 0 chr11 9393626 9393647 -112450209 + AT_rich Low_complexity Low_complexity 1 21 0 4 656 215 125 25 0 chr11 9393777 9393817 -112450039 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 4 656 381 164 0 0 chr11 9394242 9394315 -112449541 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 656 2057 250 85 106 chr11 9394720 9395746 -112448110 + RMER17B LTR ERVK 1 895 -13 4 656 182 170 167 19 chr11 9396221 9396275 -112447581 - L3 LINE CR1 -3410 1079 1018 4 656 22 0 0 0 chr11 9396627 9396649 -112447207 + AT_rich Low_complexity Low_complexity 1 22 0 4 656 407 100 14 0 chr11 9397049 9397119 -112446737 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 4 656 222 196 36 0 chr11 9397127 9397183 -112446673 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 656 263 182 14 70 chr11 9397271 9397342 -112446514 - MER5A1 DNA MER1_type -63 103 37 4 656 496 315 60 89 chr11 9397492 9397794 -112446062 + MLT1B LTR MaLR 79 363 -11 4 656 904 192 113 5 chr11 9398196 9398400 -112445456 + URR1A DNA MER1_type 1 226 0 4 656 433 219 34 0 chr11 9399163 9399309 -112444547 + GA-rich Low_complexity Low_complexity 4 154 0 4 656 918 135 0 0 chr11 9399310 9399488 -112444368 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 656 522 0 0 0 chr11 9399489 9399547 -112444309 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 656 406 275 9 18 chr11 9399814 9399925 -112443931 - PB1D10 SINE Alu -3 114 5 4 656 186 133 0 0 chr11 9400102 9400132 -112443724 + (TTC)n Simple_repeat Simple_repeat 2 31 0 4 656 29 0 0 0 chr11 9402523 9402552 -112441304 + AT_rich Low_complexity Low_complexity 1 29 0 4 656 34 24 0 0 chr11 9402859 9402900 -112440956 + AT_rich Low_complexity Low_complexity 1 41 0 4 656 7233 55 22 3 chr11 9403570 9404653 -112439203 - L1Md_F2 LINE L1 -4 6578 5475 4 656 514 231 231 55 chr11 9404698 9405009 -112438847 - RLTR9A LTR ERVK 0 368 3 5 656 34 72 0 0 chr11 9405611 9405680 -112438176 + AT_rich Low_complexity Low_complexity 1 69 0 5 656 238 284 70 56 chr11 9405710 9405781 -112438075 - ID2 SINE ID -10 73 2 5 656 336 240 115 0 chr11 9405792 9405888 -112437968 - PB1D10 SINE Alu -10 107 1 5 656 287 314 9 37 chr11 9405888 9405921 -112437935 - ID SINE ID -142 82 53 5 656 228 260 154 13 chr11 9407923 9408001 -112435855 - MIRc SINE MIR -133 135 47 5 656 201 291 26 52 chr11 9408740 9408837 -112435019 - MER5A1 DNA MER1_type -61 105 1 4 656 734 240 136 0 chr11 9411985 9412264 -112431592 - Lx9 LINE L1 -33 7611 7295 5 656 1345 323 70 33 chr11 9412269 9412589 -112431267 - L1M4c LINE L1 -314 5802 5460 5 656 235 71 48 0 chr11 9412589 9412631 -112431225 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 656 1345 323 70 33 chr11 9412631 9413472 -112430384 - L1M4c LINE L1 -657 5459 4599 5 656 1144 289 21 75 chr11 9413653 9413882 -112429974 - L1M4c LINE L1 -1527 4589 4364 5 656 3126 42 37 0 chr11 9413882 9414262 -112429594 - MTA_Mm LTR MaLR 0 396 3 5 656 1144 289 21 75 chr11 9414262 9414687 -112429169 - L1M4c LINE L1 -1753 4363 3970 5 656 222 354 11 68 chr11 9414729 9414786 -112429070 - RSINE1 SINE B4 0 165 108 5 656 2114 215 83 122 chr11 9414786 9415724 -112428132 - RLTR13D6 LTR ERVK 0 902 1 5 656 258 339 109 98 chr11 9415724 9415960 -112427896 - B4 SINE B4 -34 258 13 5 656 1114 306 91 68 chr11 9415961 9417576 -112426280 - L1M4c LINE L1 -2388 3991 2309 5 656 186 71 0 0 chr11 9417579 9417607 -112426249 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 656 1121 85 16 28 chr11 9417715 9417897 -112425959 - L1_Mus3 LINE L1 0 6638 6459 5 656 308 325 43 24 chr11 9417905 9418069 -112425787 - L1M4c LINE L1 -4650 1734 1568 5 656 257 254 0 0 chr11 9419111 9419174 -112424682 + A-rich Low_complexity Low_complexity 1 63 0 5 656 545 319 0 8 chr11 9419637 9419757 -112424099 + RSINE1 SINE B4 1 119 -46 5 656 26 30 0 0 chr11 9419780 9419813 -112424043 + AT_rich Low_complexity Low_complexity 1 33 0 5 656 3625 55 13 2 chr11 9420121 9420673 -112423183 - L1Md_F2 LINE L1 -508 6074 5517 5 656 3598 83 4 0 chr11 9420673 9421154 -112422702 + L1_Mus1 LINE L1 6083 6565 -2 5 656 275 0 29 0 chr11 9421359 9421394 -112422462 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 5 656 1194 68 0 0 chr11 9421394 9421540 -112422316 - B1_Mm SINE Alu 0 147 2 5 656 246 32 0 0 chr11 9422681 9422712 -112421144 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 656 491 269 222 63 chr11 9422781 9423265 -112420591 - RMER4B LTR ERVK -9 576 17 5 656 249 235 157 15 chr11 9423302 9423436 -112420420 - L1M1 LINE L1 -389 5914 5762 5 656 513 307 13 32 chr11 9423675 9423833 -112420023 - ID_B1 SINE B4 -2 222 68 5 656 869 57 112 16 chr11 9423873 9423998 -112419858 + B1_Mm SINE Alu 2 138 -9 5 656 330 26 0 0 chr11 9423998 9424037 -112419819 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 656 258 279 103 51 chr11 9424164 9424281 -112419575 - MIRc SINE MIR -85 183 61 5 656 493 245 0 0 chr11 9424428 9424571 -112419285 - Lx9 LINE L1 -8 7636 7494 5 656 967 191 0 0 chr11 9424618 9424796 -112419060 - Lx9 LINE L1 -261 7383 7206 5 656 342 311 55 6 chr11 9424804 9424969 -112418887 + Looper DNA PiggyBac 1229 1401 -157 5 656 258 32 0 0 chr11 9425013 9425044 -112418812 + (CAA)n Simple_repeat Simple_repeat 3 33 0 5 656 206 0 69 0 chr11 9426194 9426223 -112417633 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 656 21 36 0 0 chr11 9426899 9426927 -112416929 + AT_rich Low_complexity Low_complexity 1 28 0 5 656 310 280 0 0 chr11 9427086 9427161 -112416695 - RLTR24 LTR ERV1 -454 75 1 5 656 520 281 14 88 chr11 9428239 9428328 -112415528 + RSINE1 SINE B4 5 94 -71 5 656 228 111 0 0 chr11 9428328 9428364 -112415492 + (CTAA)n Simple_repeat Simple_repeat 3 38 0 5 656 520 281 14 88 chr11 9428364 9428422 -112415434 + RSINE1 SINE B4 95 141 -24 5 656 450 0 0 0 chr11 9428422 9428472 -112415384 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 656 189 0 0 0 chr11 9428917 9428938 -112414918 + (T)n Simple_repeat Simple_repeat 1 21 0 5 656 422 36 0 18 chr11 9429094 9429151 -112414705 + (TAA)n Simple_repeat Simple_repeat 2 57 0 5 656 448 341 38 0 chr11 9429755 9429887 -112413969 + ID_B1 SINE B4 3 139 -85 5 656 250 330 21 0 chr11 9430604 9430698 -112413158 + CT-rich Low_complexity Low_complexity 6 101 0 5 656 903 51 0 0 chr11 9430704 9430821 -112413035 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 5 656 608 219 0 40 chr11 9431151 9431275 -112412581 - B1_Mur3 SINE Alu -26 123 5 5 656 272 271 62 12 chr11 9431362 9431560 -112412296 - L1MA8 LINE L1 -185 6127 5923 5 656 619 316 132 50 chr11 9432532 9432849 -112411007 - MER2 DNA MER2_type 0 345 3 5 656 233 351 0 13 chr11 9433570 9433645 -112410211 + L2a LINE L2 3353 3426 0 5 656 21 36 0 0 chr11 9436685 9436713 -112407143 + AT_rich Low_complexity Low_complexity 1 28 0 5 656 22 0 0 0 chr11 9436741 9436763 -112407093 + AT_rich Low_complexity Low_complexity 1 22 0 5 657 272 342 63 34 chr11 9437425 9437631 -112406225 - MLT1H-int LTR MaLR -1118 291 80 5 657 194 91 73 0 chr11 9438115 9438170 -112405686 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 657 582 345 65 39 chr11 9438175 9438404 -112405452 - MER54A LTR ERVL -567 334 100 5 657 194 91 30 0 chr11 9438873 9438906 -112404950 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 657 222 348 0 0 chr11 9438940 9439052 -112404804 + T-rich Low_complexity Low_complexity 1 112 0 5 657 7077 97 14 7 chr11 9439063 9440277 -112403579 - L1_Mus4 LINE L1 -7 6629 5408 5 657 1726 134 3 3 chr11 9440275 9440567 -112403289 + MusHAL1 LINE L1 952 1243 -1469 5 657 333 114 229 0 chr11 9440566 9440636 -112403220 + L1_Mm LINE L1 5314 5399 -484 5 657 195 184 0 0 chr11 9440759 9440797 -112403059 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 657 35 78 0 0 chr11 9442225 9442302 -112401554 + AT_rich Low_complexity Low_complexity 1 77 0 5 657 234 0 0 0 chr11 9442788 9442814 -112401042 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 657 984 270 0 23 chr11 9442971 9443187 -112400669 - B3 SINE B2 -5 211 1 5 657 601 155 0 18 chr11 9443510 9443622 -112400234 - Lx9 LINE L1 -556 7088 6979 5 657 1157 249 64 20 chr11 9443630 9444039 -112399817 + Lx9 LINE L1 7210 7636 -8 5 657 183 202 89 0 chr11 9444055 9444101 -112399755 - MIR SINE MIR -100 168 120 5 657 533 268 127 44 chr11 9446320 9446636 -112397220 - MER74A LTR ERVL -2 556 215 5 657 334 286 65 11 chr11 9448046 9448138 -112395718 - PB1D10 SINE Alu -2 115 19 5 657 24 0 0 0 chr11 9448178 9448202 -112395654 + AT_rich Low_complexity Low_complexity 1 24 0 5 657 547 232 20 98 chr11 9448202 9448355 -112395501 - ID_B1 SINE B4 0 224 84 5 657 1035 264 88 30 chr11 9449367 9450086 -112393770 - L1MA4 LINE L1 -399 5898 5108 5 657 2930 87 1 1 chr11 9450142 9450656 -112393200 - L1_Mus1 LINE L1 -677 5959 5447 5 657 5436 55 1 0 chr11 9450656 9451325 -112392531 + L1_Mus1 LINE L1 5898 6567 0 5 657 702 245 63 0 chr11 9451517 9451660 -112392196 - RSINE1 SINE B4 -10 155 4 5 657 441 0 0 0 chr11 9451684 9451733 -112392123 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 657 302 294 2 9 chr11 9451734 9451850 -112392006 - L1MA4 LINE L1 -1401 4739 4626 5 657 300 111 0 0 chr11 9453098 9453143 -112390713 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 657 1124 96 7 0 chr11 9453144 9453290 -112390566 - B1_Mus1 SINE Alu -1 147 1 5 657 2378 236 29 5 chr11 9453783 9454401 -112389455 - RCHARR1 DNA MER1_type -30 944 312 5 657 203 200 0 0 chr11 9454403 9454438 -112389418 + T-rich Low_complexity Low_complexity 1 35 0 5 657 27 62 0 0 chr11 9454827 9454875 -112388981 + AT_rich Low_complexity Low_complexity 1 48 0 5 657 514 259 25 17 chr11 9454875 9454993 -112388863 - RCHARR1 DNA MER1_type -669 305 187 5 657 942 293 102 51 chr11 9454999 9455351 -112388505 + MTE2a LTR MaLR 3 372 -7 5 657 421 301 33 46 chr11 9455368 9455521 -112388335 - RCHARR1 DNA MER1_type -823 151 1 5 657 207 0 0 0 chr11 9457240 9457263 -112386593 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 5 657 4578 133 99 32 chr11 9457263 9457758 -112386098 - Lx4A LINE L1 0 7058 6506 5 657 3980 153 36 10 chr11 9457758 9458431 -112385425 - RLTR17 LTR ERVK 0 692 3 5 657 4578 133 99 32 chr11 9458431 9458833 -112385023 - Lx4A LINE L1 -553 6505 6100 5 657 442 105 113 9 chr11 9458834 9458940 -112384916 + Lx LINE L1 5977 6093 -965 5 657 1033 139 10 34 chr11 9458957 9459166 -112384690 - Lx LINE L1 -4 6650 6447 5 657 593 107 0 0 chr11 9459166 9459250 -112384606 + Lx LINE L1 6185 6268 -386 5 657 364 245 79 7 chr11 9459380 9459520 -112384336 - L1MA6 LINE L1 -21 6279 6130 5 657 423 0 0 0 chr11 9460472 9460519 -112383337 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 657 815 345 37 22 chr11 9460909 9461232 -112382624 - MER2 DNA MER2_type -8 337 10 5 657 2158 174 38 2 chr11 9461470 9462007 -112381849 - Lx4B LINE L1 -11 7047 6440 5 657 222 242 0 0 chr11 9462133 9462199 -112381657 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 657 900 121 0 0 chr11 9462292 9462416 -112381440 + B1_Mus2 SINE Alu 1 124 -23 5 657 7101 56 8 0 chr11 9462416 9463346 -112380510 + L1_Mus1 LINE L1 5631 6567 0 5 657 438 20 0 0 chr11 9463361 9463412 -112380444 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 657 328 250 37 44 chr11 9463412 9463599 -112380257 - L1M2 LINE L1 -578 5713 5526 5 657 292 211 10 62 chr11 9463597 9463693 -112380163 + L1MA9 LINE L1 6178 6268 -44 5 657 238 333 0 0 chr11 9463703 9463784 -112380072 - Tigger5 DNA MER2_type -24 2382 2302 5 657 500 302 57 26 chr11 9463818 9464012 -112379844 - Tigger5 DNA MER2_type -2205 201 2 5 657 545 222 0 7 chr11 9464320 9464456 -112379400 + CT-rich Low_complexity Low_complexity 2 136 0 5 657 1013 226 231 18 chr11 9464902 9465240 -112378616 - MTD LTR MaLR -4 415 6 5 657 1068 350 25 8 chr11 9469277 9469632 -112374224 + MLT1A0 LTR MaLR 1 361 -4 5 657 546 55 95 7 chr11 9470022 9470169 -112373687 + (TG)n Simple_repeat Simple_repeat 1 160 0 5 657 189 0 0 0 chr11 9470169 9470190 -112373666 + (TGG)n Simple_repeat Simple_repeat 3 23 0 5 657 288 0 0 0 chr11 9470190 9470222 -112373634 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 657 261 247 82 0 chr11 9470331 9470404 -112373452 - MLT1B LTR MaLR -311 79 1 5 657 297 100 0 0 chr11 9471237 9471287 -112372569 + (A)n Simple_repeat Simple_repeat 1 50 0 6 657 319 116 43 0 chr11 9472121 9472181 -112371675 - ORR1C2 LTR MaLR -2 392 318 6 657 358 259 287 0 chr11 9472184 9472292 -112371564 + B1_Mm SINE Alu 2 140 -7 6 657 1046 250 50 60 chr11 9472340 9472483 -112371373 - ORR1C2 LTR MaLR -58 326 176 6 657 375 41 0 0 chr11 9472483 9472532 -112371324 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 657 1046 250 50 60 chr11 9472532 9472677 -112371179 - ORR1C2 LTR MaLR -209 175 42 6 657 2351 179 154 4 chr11 9472677 9473183 -112370673 - RLTR25A LTR ERVK -2 1101 520 6 657 280 244 0 25 chr11 9473429 9473547 -112370309 + CT-rich Low_complexity Low_complexity 1 115 0 6 657 444 139 27 65 chr11 9473926 9474110 -112369746 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 6 657 183 139 0 0 chr11 9474184 9474220 -112369636 + (CAGAGA)n Simple_repeat Simple_repeat 6 41 0 6 657 204 258 200 21 chr11 9474823 9474918 -112368938 + L3 LINE CR1 3434 3545 -944 6 657 534 114 0 0 chr11 9475420 9475508 -112368348 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 657 365 238 37 24 chr11 9475654 9475736 -112368120 - PB1D10 SINE Alu -31 86 4 6 657 336 258 50 20 chr11 9475736 9475753 -112368103 - ID_B1 SINE B4 -57 167 66 6 657 262 381 0 9 chr11 9477522 9477628 -112366228 - ORR1E LTR MaLR -210 149 45 6 657 4499 30 20 0 chr11 9480086 9480623 -112363233 - L1Md_F3 LINE L1 -14 6570 6023 6 657 3523 31 2 0 chr11 9480623 9481093 -112362763 + L1Md_F3 LINE L1 5550 6020 -564 6 657 511 251 181 18 chr11 9481093 9481345 -112362511 - MLT-int LTR MaLR -128 1607 1160 6 657 315 0 0 0 chr11 9482229 9482264 -112361592 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 657 935 258 5 10 chr11 9482316 9482516 -112361340 + B3 SINE B2 18 216 0 6 657 1156 60 0 26 chr11 9483199 9483353 -112360503 + B2_Mm2 SINE B2 1 150 -45 6 657 954 170 129 35 chr11 9485915 9486116 -112357740 - URR1A DNA MER1_type -1 225 6 6 657 198 0 0 0 chr11 9486653 9486675 -112357181 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 657 542 195 38 4 chr11 9488957 9489100 -112354756 - B1_Mus1 SINE Alu -10 139 1 6 657 2052 265 75 7 chr11 9489588 9490255 -112353601 - Lx6 LINE L1 -11 7449 6732 6 657 506 216 8 0 chr11 9490541 9490666 -112353190 + CT-rich Low_complexity Low_complexity 2 127 0 6 657 623 48 0 12 chr11 9490688 9490772 -112353084 + (TCCC)n Simple_repeat Simple_repeat 1 83 0 6 657 22 0 0 0 chr11 9491129 9491151 -112352705 + AT_rich Low_complexity Low_complexity 1 22 0 6 657 24 53 0 0 chr11 9491429 9491467 -112352389 + AT_rich Low_complexity Low_complexity 1 38 0 6 657 766 38 0 28 chr11 9492252 9492360 -112351496 + (TTTTC)n Simple_repeat Simple_repeat 2 106 0 6 657 471 307 40 57 chr11 9492604 9492780 -112351076 - ID_B1 SINE B4 -15 209 37 6 657 273 402 19 18 chr11 9492907 9493110 -112350746 - MIRb SINE MIR 0 268 65 6 657 1860 292 38 34 chr11 9493350 9494058 -112349798 - Lx9 LINE L1 -219 7425 6715 6 657 755 302 43 0 chr11 9494055 9494287 -112349569 + Lx9 LINE L1 6458 6699 -945 6 657 27 0 0 0 chr11 9495527 9495554 -112348302 + AT_rich Low_complexity Low_complexity 1 27 0 6 657 579 301 21 21 chr11 9495698 9495891 -112347965 + B3A SINE B2 2 194 -4 6 657 1180 68 0 0 chr11 9495971 9496117 -112347739 + B1_Mus2 SINE Alu 2 147 0 6 657 419 232 0 44 chr11 9497424 9497514 -112346342 + PB1D7 SINE Alu 1 86 -34 6 657 333 329 13 71 chr11 9497541 9497695 -112346161 + L1MEd LINE L1 1094 1238 -4881 6 657 228 259 0 18 chr11 9498608 9498663 -112345193 + MamGypLTR2c LTR Gypsy 139 192 -876 6 657 198 71 0 0 chr11 9500068 9500096 -112343760 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 657 786 117 0 0 chr11 9500147 9500267 -112343589 + (TA)n Simple_repeat Simple_repeat 1 120 0 2 657 354 45 0 0 chr11 9501079 9501123 -112342733 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 657 360 298 122 17 chr11 9502311 9502492 -112341364 + RMER15 LTR ERVL 337 536 -39 4 657 277 231 15 15 chr11 9503822 9503888 -112339968 - ID4_ SINE ID -16 67 2 5 657 720 253 71 0 chr11 9505765 9505935 -112337921 - B3A SINE B2 -16 182 1 6 657 24 0 0 0 chr11 9505957 9505981 -112337875 + AT_rich Low_complexity Low_complexity 1 24 0 7 657 226 339 67 83 chr11 9506145 9506325 -112337531 + B3A SINE B2 6 182 -16 8 657 195 139 0 0 chr11 9506325 9506361 -112337495 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 657 870 294 118 30 chr11 9506761 9507066 -112336790 + ORR1E LTR MaLR 6 337 -22 1 657 1164 68 0 0 chr11 9507261 9507407 -112336449 - B1_Mm SINE Alu -1 146 1 1 657 908 268 14 0 chr11 9508645 9508858 -112334998 + B3 SINE B2 1 216 0 1 657 365 306 25 70 chr11 9509863 9510021 -112333835 - L1ME3A LINE L1 -213 5960 5810 1 657 426 299 114 13 chr11 9510144 9510381 -112333475 - L1MB7 LINE L1 -17 6167 5907 1 657 227 239 85 8 chr11 9510434 9510552 -112333304 - L1M4 LINE L1 -2210 3936 3810 1 657 217 203 58 0 chr11 9510569 9510638 -112333218 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 1 657 22 0 0 0 chr11 9510689 9510711 -112333145 + AT_rich Low_complexity Low_complexity 1 22 0 1 657 690 214 188 64 chr11 9510711 9510961 -112332895 - Lx5 LINE L1 0 7050 6770 1 657 381 316 64 26 chr11 9510974 9511130 -112332726 + Tigger5 DNA MER2_type 1 162 -2244 1 657 229 297 31 0 chr11 9511117 9511181 -112332675 + Tigger5 DNA MER2_type 2239 2304 -102 1 657 198 0 0 0 chr11 9511181 9511203 -112332653 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 2 657 253 378 93 36 chr11 9511233 9511373 -112332483 - B1F2 SINE Alu 0 149 2 2 657 24 32 0 0 chr11 9511381 9511412 -112332444 + AT_rich Low_complexity Low_complexity 1 31 0 2 657 307 309 86 13 chr11 9511437 9511670 -112332186 - L1M4 LINE L1 -2398 3748 3499 1 657 350 91 18 0 chr11 9512876 9512931 -112330925 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 657 358 330 225 11 chr11 9513474 9513652 -112330204 - MLT2B3 LTR ERVL -116 438 223 2 657 210 233 0 43 chr11 9513657 9513751 -112330105 + GA-rich Low_complexity Low_complexity 2 91 0 2 657 245 339 164 35 chr11 9513774 9513945 -112329911 - MLT2B3 LTR ERVL -281 234 42 2 657 261 0 0 0 chr11 9513945 9513974 -112329882 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2 657 377 125 0 0 chr11 9514018 9514090 -112329766 - Lx9 LINE L1 -47 7597 7526 2 657 452 283 0 8 chr11 9514133 9514254 -112329602 - MLT1A0 LTR MaLR -236 129 10 2 657 333 330 109 32 chr11 9514255 9514540 -112329316 + L1MC1 LINE L1 5842 6148 -185 2 657 387 60 0 0 chr11 9514865 9514915 -112328941 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 657 189 0 0 0 chr11 9515023 9515044 -112328812 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 657 300 293 29 149 chr11 9515279 9515520 -112328336 - MER34A LTR ERV1 -359 212 1 3 657 215 74 0 0 chr11 9520760 9520787 -112323069 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 657 783 201 0 0 chr11 9520787 9520966 -112322890 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 657 264 127 0 0 chr11 9520969 9521024 -112322832 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 657 914 176 119 0 chr11 9522333 9522577 -112321279 - Lx9 LINE L1 -2 7642 7370 3 657 803 195 129 10 chr11 9522795 9522997 -112320859 - URR1A DNA MER1_type 0 226 1 3 657 242 365 41 29 chr11 9524434 9524606 -112319250 + Tigger15a DNA TcMar 497 670 -45 3 657 306 0 0 0 chr11 9524793 9524827 -112319029 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 657 234 0 0 0 chr11 9524827 9524852 -112319004 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 657 486 313 106 17 chr11 9524885 9525187 -112318669 - Lx9 LINE L1 -206 7438 7110 4 657 1457 184 123 19 chr11 9525329 9525767 -112318089 + RMER4B LTR ERVK 1 457 -9 4 657 562 319 88 62 chr11 9525778 9526200 -112317656 - Lx9 LINE L1 -698 6946 6357 4 657 234 264 41 14 chr11 9526196 9526269 -112317587 - Lx9 LINE L1 -1207 6437 6363 4 657 4164 80 2 3 chr11 9526508 9527088 -112316768 - L1_Mus2 LINE L1 -178 6388 5810 4 657 21 0 0 0 chr11 9527637 9527658 -112316198 + AT_rich Low_complexity Low_complexity 1 21 0 4 657 1543 55 5 10 chr11 9529393 9529596 -112314260 - L1_Mus1 LINE L1 0 6567 6366 4 657 385 303 71 19 chr11 9529656 9529811 -112314045 + RSINE1 SINE B4 3 165 0 4 657 1406 274 91 7 chr11 9529904 9530490 -112313366 - L1MC1 LINE L1 -114 6219 5585 4 657 310 293 39 26 chr11 9530493 9530570 -112313286 - ID4 SINE ID 0 83 6 4 657 228 380 19 0 chr11 9530583 9530691 -112313165 - B1F SINE Alu -3 146 37 5 657 271 236 0 18 chr11 9530701 9530757 -112313099 - B1F1 SINE Alu -90 59 5 5 657 284 292 144 14 chr11 9530861 9531208 -112312648 - L1MC1 LINE L1 -876 5270 4879 4 657 237 33 0 0 chr11 9532113 9532143 -112311713 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 657 4499 166 40 9 chr11 9532541 9532664 -112311192 - Lx2B LINE L1 -1 6999 6864 5 657 183 80 0 0 chr11 9532664 9532689 -112311167 + (CTCA)n Simple_repeat Simple_repeat 2 26 0 5 657 4499 166 40 9 chr11 9532689 9533405 -112310451 - Lx2B LINE L1 -137 6863 6134 5 657 246 143 0 0 chr11 9533432 9533481 -112310375 + (T)n Simple_repeat Simple_repeat 1 49 0 5 657 1156 68 0 0 chr11 9533482 9533628 -112310228 - B1_Mm SINE Alu 0 147 2 5 657 541 320 67 20 chr11 9535020 9535275 -112308581 - Lx8 LINE L1 -291 7182 6916 5 657 48 85 0 0 chr11 9535677 9535795 -112308061 + AT_rich Low_complexity Low_complexity 1 118 0 5 657 575 207 7 0 chr11 9537281 9537416 -112306440 + CT-rich Low_complexity Low_complexity 1 136 0 5 657 618 14 0 0 chr11 9537426 9537497 -112306359 + (TTTCC)n Simple_repeat Simple_repeat 3 73 0 6 657 225 0 0 0 chr11 9537498 9537523 -112306333 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 657 282 293 0 0 chr11 9537523 9537598 -112306258 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 657 275 330 29 20 chr11 9537661 9537763 -112306093 - B3A SINE B2 -85 113 11 6 657 304 194 50 61 chr11 9537836 9537935 -112305921 - Lx7 LINE L1 0 7696 7611 6 657 21 0 0 0 chr11 9538556 9538577 -112305279 + AT_rich Low_complexity Low_complexity 1 21 0 6 657 346 335 130 89 chr11 9539214 9539341 -112304515 - MER74A LTR ERVL -39 519 416 6 657 1161 74 0 0 chr11 9539341 9539489 -112304367 + B1_Mus1 SINE Alu 1 148 0 6 657 346 335 130 89 chr11 9539489 9539846 -112304010 - MER74A LTR ERVL -143 415 15 6 657 276 30 0 0 chr11 9540837 9540870 -112302986 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 657 1648 134 99 0 chr11 9541906 9542198 -112301658 - Lx2 LINE L1 -2 6995 6675 6 657 1129 242 90 20 chr11 9542283 9542629 -112301227 + ORR1D2 LTR MaLR 1 370 0 7 657 1299 170 19 26 chr11 9542905 9543171 -112300685 + Lx3C LINE L1 6711 6974 -2 7 657 231 36 0 0 chr11 9543489 9543517 -112300339 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 7 657 202 200 0 0 chr11 9543541 9543576 -112300280 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 657 260 197 30 15 chr11 9546094 9546161 -112297695 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 7 657 183 114 0 0 chr11 9546295 9546330 -112297526 + (A)n Simple_repeat Simple_repeat 1 35 0 7 657 30 27 0 0 chr11 9546418 9546455 -112297401 + AT_rich Low_complexity Low_complexity 1 37 0 7 657 270 136 0 0 chr11 9546614 9546658 -112297198 + (T)n Simple_repeat Simple_repeat 1 44 0 7 657 206 160 20 0 chr11 9547167 9547217 -112296639 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 7 657 304 274 24 151 chr11 9548369 9548423 -112295433 - B2_Mm2 SINE B2 -5 190 151 7 657 243 88 0 0 chr11 9548423 9548457 -112295399 + (TATG)n Simple_repeat Simple_repeat 1 34 0 8 657 557 265 131 11 chr11 9548457 9548608 -112295248 - B3 SINE B2 -34 182 12 7 657 255 272 10 5 chr11 9548608 9548746 -112295110 - L1MB8 LINE L1 -21 6163 6025 8 657 1429 310 129 48 chr11 9548936 9549004 -112294852 - Lx8 LINE L1 -215 7258 7200 8 657 4833 99 127 25 chr11 9549004 9549809 -112294047 - RMER17D LTR ERVK -2 887 1 8 657 1429 310 129 48 chr11 9549809 9551265 -112292591 - Lx8 LINE L1 -274 7199 5611 8 657 1748 284 2 22 chr11 9551269 9551672 -112292184 - MTD LTR MaLR -8 411 17 8 657 389 243 78 7 chr11 9551702 9551855 -112292001 - L1_Mur3 LINE L1 -664 5639 5476 8 657 5770 148 58 7 chr11 9551847 9553712 -112290144 - Lx LINE L1 0 6654 4700 8 657 2736 139 0 0 chr11 9553710 9554163 -112289693 + L1_Mur2 LINE L1 4248 4700 -1177 8 657 489 27 13 26 chr11 9554169 9554246 -112289610 + (TTTTG)n Simple_repeat Simple_repeat 5 80 0 8 657 7252 63 7 0 chr11 9554352 9555320 -112288536 - L1_Mus1 LINE L1 0 6567 5593 8 657 591 266 112 28 chr11 9555321 9555708 -112288148 - L1_Mur3 LINE L1 -773 5370 4947 8 657 728 178 6 8 chr11 9555727 9556070 -112287786 + CT-rich Low_complexity Low_complexity 1 342 0 9 657 417 227 25 8 chr11 9556072 9556192 -112287664 + (CCTG)n Simple_repeat Simple_repeat 2 123 0 9 657 2378 278 49 29 chr11 9556192 9557406 -112286450 - L1_Mur3 LINE L1 -966 4914 3677 8 657 534 197 0 0 chr11 9557422 9557539 -112286317 + (TG)n Simple_repeat Simple_repeat 1 117 0 9 657 471 202 0 0 chr11 9557593 9557702 -112286154 + (TG)n Simple_repeat Simple_repeat 2 110 0 9 657 237 299 82 0 chr11 9557710 9557857 -112285999 - L1M4 LINE L1 -2471 3675 3517 9 657 329 280 119 5 chr11 9557955 9558149 -112285707 - L1_Mur3 LINE L1 -2471 3409 3194 8 657 22 35 0 0 chr11 9558218 9558247 -112285609 + AT_rich Low_complexity Low_complexity 1 29 0 9 657 4140 75 0 0 chr11 9558269 9558840 -112285016 - L1_Mm LINE L1 -604 5279 4709 9 657 2077 67 0 0 chr11 9558840 9559122 -112284734 + L1_Mm LINE L1 4420 4701 -1182 9 657 2199 40 0 0 chr11 9559121 9559396 -112284460 + L1Md_F2 LINE L1 5312 5586 -297 9 657 7503 56 29 2 chr11 9559397 9560364 -112283492 + L1Md_F2 LINE L1 5588 6580 -2 9 657 24 0 0 0 chr11 9560576 9560600 -112283256 + AT_rich Low_complexity Low_complexity 1 24 0 9 657 830 38 9 0 chr11 9561829 9561935 -112281921 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 9 657 3365 63 76 0 chr11 9562017 9562228 -112281628 - L1_Mus2 LINE L1 0 6566 6347 9 657 354 23 0 0 chr11 9562228 9562271 -112281585 + (TGG)n Simple_repeat Simple_repeat 1 43 0 9 657 3365 63 76 0 chr11 9562271 9562532 -112281324 - L1_Mus2 LINE L1 -220 6346 6060 9 657 536 332 54 74 chr11 9562544 9562695 -112281161 - RMER15 LTR ERVL -12 563 416 1 657 294 29 0 0 chr11 9562695 9562730 -112281126 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 657 1163 68 7 0 chr11 9562732 9562878 -112280978 - B1_Mus2 SINE Alu 0 147 1 1 657 536 332 54 74 chr11 9562878 9563019 -112280837 - RMER15 LTR ERVL -160 415 274 1 657 285 258 43 0 chr11 9563196 9563289 -112280567 - L1MB7 LINE L1 -297 5887 5791 1 657 441 0 0 0 chr11 9563294 9563343 -112280513 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 657 507 256 0 58 chr11 9563657 9563794 -112280062 - B3A SINE B2 -5 193 65 1 657 705 284 92 16 chr11 9563845 9564224 -112279632 - L1M4b LINE L1 -6252 1082 675 1 657 4282 83 38 0 chr11 9564634 9565236 -112278620 - L1_Mus3 LINE L1 0 6638 6014 1 657 5566 115 18 11 chr11 9565236 9566188 -112277668 + MusHAL1 LINE L1 662 1620 -1092 1 82 3299 70 30 34 chr11 9567989 9568461 -112275395 + L1Md_F2 LINE L1 6109 6578 -4 1 658 245 303 13 26 chr11 9569247 9569325 -112274531 - ID4 SINE ID -5 78 2 1 658 24 67 0 0 chr11 9569334 9569379 -112274477 + AT_rich Low_complexity Low_complexity 1 45 0 1 658 356 280 68 26 chr11 9569416 9569607 -112274249 - Lx8 LINE L1 -29 7444 7246 1 658 1163 302 26 47 chr11 9569619 9569931 -112273925 - Lx7 LINE L1 -587 7109 6805 1 658 2959 88 2 2 chr11 9569931 9570331 -112273525 - MTB LTR MaLR 0 400 1 1 658 1163 302 26 47 chr11 9570331 9570525 -112273331 - Lx7 LINE L1 -892 6804 6614 1 658 631 306 53 48 chr11 9570682 9571010 -112272846 + ORR1E LTR MaLR 1 349 -30 1 658 252 311 84 9 chr11 9571088 9571195 -112272661 - LTR85a LTR Gypsy? -575 127 13 1 658 1534 182 81 16 chr11 9571849 9572172 -112271684 - ORR1D1 LTR MaLR -30 344 1 1 658 558 0 0 0 chr11 9572251 9572313 -112271543 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 658 183 129 0 0 chr11 9572687 9572718 -112271138 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 658 252 368 36 12 chr11 9574263 9574428 -112269428 - MIR SINE MIR -33 229 61 1 658 615 314 85 56 chr11 9575845 9576294 -112267562 + RLTR12B LTR ERVK 48 509 -19 1 658 6420 69 0 1 chr11 9576520 9577376 -112266480 - L1_Mus1 LINE L1 0 6567 5713 1 658 2036 105 3 0 chr11 9577376 9577672 -112266184 + L1_Mus1 LINE L1 5411 5707 -176 1 658 335 299 49 42 chr11 9577801 9577944 -112265912 + RSINE1 SINE B4 4 147 -18 1 658 2070 294 129 30 chr11 9578111 9578219 -112265637 + Lx8 LINE L1 6326 6439 -1034 1 658 180 0 0 0 chr11 9578219 9578239 -112265617 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 658 2070 294 129 30 chr11 9578239 9579145 -112264711 + Lx8 LINE L1 6440 7441 -32 1 658 435 325 151 30 chr11 9579960 9580192 -112263664 - RMER15 LTR ERVL -41 534 275 1 658 389 313 46 26 chr11 9580799 9580950 -112262906 + MER5A1 DNA MER1_type 13 166 0 1 658 340 329 36 28 chr11 9580972 9581113 -112262743 - B1_Mus1 SINE Alu -1 147 4 1 658 822 252 19 28 chr11 9581132 9581348 -112262508 - B3 SINE B2 0 216 3 1 658 447 19 0 0 chr11 9582556 9582608 -112261248 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 658 799 312 47 26 chr11 9582658 9582780 -112261076 - Lx9 LINE L1 -2 7642 7512 1 658 342 45 0 0 chr11 9582780 9582824 -112261032 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 658 799 312 47 26 chr11 9582824 9583191 -112260665 - Lx9 LINE L1 -133 7511 7143 1 658 5988 35 18 1 chr11 9585427 9586144 -112257712 - L1Md_F2 LINE L1 -1 6581 5853 1 658 231 36 0 0 chr11 9586497 9586525 -112257331 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 658 232 344 0 0 chr11 9586937 9587001 -112256855 + polypurine Low_complexity Low_complexity 1 64 0 1 658 727 263 3 21 chr11 9587650 9587892 -112255964 + L1MA4 LINE L1 5656 5902 -398 1 658 2503 176 67 51 chr11 9587913 9588421 -112255435 + RMER20A LTR ERVK 1 516 0 1 658 227 323 73 91 chr11 9589864 9590205 -112253651 + ORR1D1 LTR MaLR 18 352 -22 1 658 495 0 0 0 chr11 9590452 9590507 -112253349 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 658 297 0 0 0 chr11 9590507 9590539 -112253317 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 658 226 344 77 26 chr11 9593280 9593435 -112250421 - RSINE1 SINE B4 0 165 3 1 658 759 292 114 54 chr11 9593587 9593938 -112249918 + MLT1D LTR MaLR 45 416 -89 1 658 845 241 0 48 chr11 9595379 9595606 -112248250 - B3 SINE B2 0 216 1 1 658 376 283 127 36 chr11 9595868 9595978 -112247878 + PB1D10 SINE Alu 7 126 -1 1 658 678 175 0 0 chr11 9597335 9597512 -112246344 + GA-rich Low_complexity Low_complexity 2 178 0 1 658 221 174 0 21 chr11 9597523 9597570 -112246286 + GA-rich Low_complexity Low_complexity 2 47 0 1 658 21 0 0 0 chr11 9597649 9597670 -112246186 + AT_rich Low_complexity Low_complexity 1 21 0 1 658 1015 280 45 16 chr11 9598374 9598621 -112245235 - B4 SINE B4 -17 275 22 1 658 474 75 0 0 chr11 9598714 9598781 -112245075 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 658 223 294 0 0 chr11 9598782 9598833 -112245023 - PB1 SINE Alu -2 125 75 1 658 204 232 18 0 chr11 9600557 9600613 -112243243 + GA-rich Low_complexity Low_complexity 4 60 0 1 658 2088 120 12 58 chr11 9601879 9602224 -112241632 - ORR1A4 LTR MaLR 0 329 1 1 658 847 169 168 36 chr11 9603167 9603256 -112240600 - URR1B DNA MER1_type -3 222 138 1 658 4518 64 11 0 chr11 9603256 9603818 -112240038 - L1_Mus1 LINE L1 0 6567 6000 1 658 847 169 168 36 chr11 9603818 9603924 -112239932 - URR1B DNA MER1_type -88 137 1 1 658 231 114 0 0 chr11 9604065 9604100 -112239756 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 658 339 63 48 0 chr11 9606134 9606197 -112237659 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 658 241 452 30 20 chr11 9606559 9606762 -112237094 - LTR33A_ LTR ERVL -311 220 16 1 658 1066 204 211 13 chr11 9607411 9607723 -112236133 + ORR1D1 LTR MaLR 1 374 0 1 658 257 348 68 26 chr11 9607773 9607965 -112235891 + MIRc SINE MIR 7 206 -62 1 658 3082 11 43 0 chr11 9607988 9608340 -112235516 - IAPLTR1_Mm LTR ERVK 0 367 1 1 658 36985 17 9 2 chr11 9608340 9614719 -112229137 - IAPEz-int LTR ERVK 0 6481 8 1 658 3072 14 43 0 chr11 9614719 9615071 -112228785 - IAPLTR1_Mm LTR ERVK 0 367 1 1 658 487 304 153 25 chr11 9615380 9615700 -112228156 - MLT1A LTR MaLR -13 361 1 1 658 446 323 94 15 chr11 9615781 9616048 -112227808 + B4A SINE B4 1 288 -4 1 658 277 353 67 0 chr11 9616292 9616442 -112227414 + L3 LINE CR1 4183 4342 -147 1 658 1333 268 79 33 chr11 9617081 9617475 -112226381 - MTD LTR MaLR -3 416 5 1 658 245 307 55 36 chr11 9618768 9619021 -112224835 - L1ME1 LINE L1 -108 6071 5814 1 658 334 327 87 48 chr11 9619041 9619272 -112224584 - L1ME1 LINE L1 -540 5639 5394 1 658 194 0 39 0 chr11 9619272 9619298 -112224558 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 658 334 327 87 48 chr11 9619298 9619355 -112224501 - L1ME1 LINE L1 -786 5393 5341 1 658 496 133 8 81 chr11 9619467 9619590 -112224266 - Lx9 LINE L1 0 7644 7531 1 658 426 204 39 39 chr11 9619744 9619846 -112224010 - B1F SINE Alu -1 148 47 1 658 274 298 142 102 chr11 9620037 9620164 -112223692 - B4A SINE B4 -1 291 160 1 658 943 251 67 31 chr11 9620325 9620659 -112223197 - MTD LTR MaLR -14 405 69 1 658 629 237 15 15 chr11 9620905 9621042 -112222814 - B1_Mus2 SINE Alu -2 145 9 1 658 750 175 0 0 chr11 9621094 9621237 -112222619 + (TA)n Simple_repeat Simple_repeat 1 143 0 1 658 509 326 127 35 chr11 9621275 9621764 -112222092 - L1MEc LINE L1 -5318 1082 549 1 658 397 274 161 41 chr11 9621847 9622189 -112221667 - L1MEc LINE L1 -5969 431 49 1 658 471 325 74 34 chr11 9622985 9623160 -112220696 - B3A SINE B2 -6 192 11 1 658 193 224 52 0 chr11 9623692 9623750 -112220106 - MIRb SINE MIR -72 196 136 1 658 202 365 87 89 chr11 9624067 9624482 -112219374 + L2a LINE L2 2981 3394 -32 1 658 952 229 5 15 chr11 9625346 9625550 -112218306 - B3 SINE B2 -10 206 5 1 658 29 47 0 0 chr11 9626007 9626050 -112217806 + AT_rich Low_complexity Low_complexity 1 43 0 1 658 24 91 0 0 chr11 9627474 9627540 -112216316 + AT_rich Low_complexity Low_complexity 1 66 0 1 658 353 292 28 43 chr11 9627797 9628008 -112215848 + MURVY-int LTR ERV1 7136 7343 -109 1 658 2111 82 180 0 chr11 9628163 9628540 -112215316 + RLTR47_MM LTR ERV1 1 445 -87 1 658 281 39 101 25 chr11 9628545 9628624 -112215232 + A-rich Low_complexity Low_complexity 3 87 0 1 658 461 282 0 0 chr11 9628878 9628981 -112214875 - B3 SINE B2 -112 104 2 1 658 247 0 25 50 chr11 9629003 9629043 -112214813 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 0 1 658 369 0 0 0 chr11 9629473 9629514 -112214342 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 658 1096 156 101 0 chr11 9629887 9630086 -112213770 + URR1A DNA MER1_type 6 224 -2 1 658 386 322 44 110 chr11 9630481 9630617 -112213239 - PB1D10 SINE Alu -20 127 1 1 658 243 0 0 0 chr11 9631139 9631166 -112212690 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 658 717 12 0 0 chr11 9631166 9631247 -112212609 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 658 26 0 0 0 chr11 9631990 9632016 -112211840 + AT_rich Low_complexity Low_complexity 1 26 0 1 658 188 216 0 0 chr11 9632347 9632384 -112211472 + L4 LINE RTE 1985 2021 -8 1 658 340 342 174 9 chr11 9632584 9632839 -112211017 + RSINE1 SINE B4 2 274 -18 1 658 254 29 29 0 chr11 9632842 9632877 -112210979 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 658 255 191 0 60 chr11 9632947 9632997 -112210859 - ID4 SINE ID -11 72 26 1 658 1606 249 66 132 chr11 9634567 9635535 -112208321 + RMER13B LTR ERVK 1 904 -4 1 658 189 74 0 0 chr11 9635705 9635732 -112208124 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 1 658 366 91 0 0 chr11 9636754 9636809 -112207047 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 658 542 140 40 0 chr11 9637757 9637857 -112205999 - B1_Mur3 SINE Alu 0 149 46 1 658 564 126 41 23 chr11 9637984 9638155 -112205701 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1 658 364 244 0 0 chr11 9641142 9641228 -112202628 + MER53 DNA hAT 9 94 -99 1 658 361 232 83 10 chr11 9642151 9642247 -112201609 - MTD LTR MaLR 0 419 317 2 658 608 279 71 50 chr11 9642804 9643241 -112200615 - L1MEg LINE L1 -4614 1470 1025 2 658 315 0 0 0 chr11 9643898 9643933 -112199923 + (A)n Simple_repeat Simple_repeat 1 35 0 2 658 38900 14 1 6 chr11 9644087 9650473 -112193383 - L1Md_A LINE L1 0 6582 232 2 658 241 380 51 23 chr11 9651122 9651297 -112192559 - MIR SINE MIR -39 223 44 2 658 318 264 69 0 chr11 9651658 9651730 -112192126 - MER77 LTR ERVL -479 128 52 2 658 292 225 63 0 chr11 9652681 9652792 -112191064 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 2 658 530 280 46 92 chr11 9652792 9652830 -112191026 - MLT2B2 LTR ERVL -24 531 497 2 658 405 0 0 0 chr11 9652830 9652875 -112190981 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 658 640 319 56 75 chr11 9652875 9653364 -112190492 - MLT2B2 LTR ERVL -59 496 1 2 658 505 293 7 60 chr11 9653418 9653567 -112190289 + RSINE1 SINE B4 9 149 -16 2 658 26 0 0 0 chr11 9653869 9653895 -112189961 + AT_rich Low_complexity Low_complexity 1 26 0 2 658 328 308 22 67 chr11 9655101 9655369 -112188487 + L1_Rod LINE L1 1625 1880 -3967 2 658 469 299 11 67 chr11 9655644 9655913 -112187943 + L1_Mur3 LINE L1 2172 2425 -3455 2 658 512 321 49 26 chr11 9655896 9656245 -112187611 + L1_Mur3 LINE L1 1669 2025 -3855 2 658 590 235 10 82 chr11 9656284 9656479 -112187377 + Lx9 LINE L1 7101 7281 -363 2 658 5049 181 25 47 chr11 9656497 9657448 -112186408 + RLTR21 LTR ERVK 33 951 -621 2 658 204 40 0 0 chr11 9657448 9657473 -112186383 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 658 5049 181 25 47 chr11 9657473 9657639 -112186217 + RLTR21 LTR ERVK 952 1125 -447 2 658 1157 185 80 9 chr11 9657742 9658069 -112185787 + Lx9 LINE L1 7294 7643 -1 2 658 1447 124 52 0 chr11 9658129 9658362 -112185494 - L1_Mus3 LINE L1 -7 6631 6387 2 658 3883 122 12 2 chr11 9658361 9658934 -112184922 + L1_Mus4 LINE L1 6056 6634 -2 2 658 1183 274 70 45 chr11 9658999 9659397 -112184459 - MTD LTR MaLR 0 419 12 2 658 237 218 0 0 chr11 9659397 9659452 -112184404 + (CCCTAA)n Simple_repeat Simple_repeat 2 56 0 2 658 1267 73 38 38 chr11 9659542 9659728 -112184128 + B2_Mm2 SINE B2 2 187 -8 2 658 279 335 68 18 chr11 9659855 9660074 -112183782 + ERVL-B4-int LTR ERVL 2435 2664 -3050 2 658 657 309 103 14 chr11 9660145 9660581 -112183275 + ERVL-int LTR ERVL 4896 5370 -387 2 658 632 297 67 45 chr11 9660883 9661151 -112182705 - MLT1E LTR MaLR -373 280 7 2 658 230 0 33 0 chr11 9663000 9663030 -112180826 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 2 658 360 0 0 0 chr11 9664183 9664223 -112179633 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 658 369 0 0 0 chr11 9664223 9664263 -112179593 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 658 4288 147 35 78 chr11 9664265 9665212 -112178644 - RMER17A2 LTR ERVK 0 906 1 2 658 1646 166 29 75 chr11 9665518 9665763 -112178093 - ORR1A2 LTR MaLR 0 329 81 2 658 3137 52 9 29 chr11 9665763 9666182 -112177674 - RLTR10A LTR ERVK 0 411 1 2 658 1646 166 29 75 chr11 9666182 9666281 -112177575 - ORR1A2 LTR MaLR -249 80 1 2 658 398 85 34 0 chr11 9666281 9666340 -112177516 - ORR1A2-int LTR MaLR 0 1963 1903 2 658 794 175 0 42 chr11 9666330 9666473 -112177383 + ORR1A4 LTR MaLR 177 313 -16 2 658 1229 162 124 0 chr11 9666484 9666743 -112177113 + ORR1A4-int LTR MaLR 1 291 -1672 2 658 4867 149 48 5 chr11 9666740 9667568 -112176288 - ORR1A2-int LTR MaLR -70 1893 1030 2 658 241 140 17 17 chr11 9667570 9667628 -112176228 + CT-rich Low_complexity Low_complexity 3 60 0 2 658 372 156 11 22 chr11 9667615 9667678 -112176178 + T-rich Low_complexity Low_complexity 29 92 0 2 658 1030 115 0 0 chr11 9667678 9667826 -112176030 - B1_Mus1 SINE Alu 0 148 1 2 658 372 156 11 22 chr11 9667826 9667854 -112176002 + T-rich Low_complexity Low_complexity 2 28 0 2 658 26688 24 2 0 chr11 9667860 9671850 -112172006 - L1Md_A LINE L1 0 6582 2583 2 658 1416 191 32 6 chr11 9671850 9672186 -112171670 - ORR1A2-int LTR MaLR -920 1043 718 2 658 561 203 311 57 chr11 9672147 9672356 -112171500 - MT2B LTR ERVL -315 286 25 2 658 3755 201 22 9 chr11 9672247 9672981 -112170875 - ORR1A2-int LTR MaLR -1220 743 1 2 658 1686 194 6 66 chr11 9672981 9673103 -112170753 - ORR1A2 LTR MaLR 0 327 204 2 658 3425 23 5 0 chr11 9673103 9673497 -112170359 + MTA_Mm LTR MaLR 1 396 0 2 658 1686 194 6 66 chr11 9673497 9673722 -112170134 - ORR1A2 LTR MaLR -124 203 2 2 658 222 196 0 0 chr11 9673722 9673768 -112170088 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 658 690 305 127 8 chr11 9674637 9675188 -112168668 - L1_Mur3 LINE L1 -54 5826 5217 2 658 21 0 0 0 chr11 9675246 9675267 -112168589 + AT_rich Low_complexity Low_complexity 1 21 0 2 658 584 314 71 20 chr11 9675664 9676074 -112167782 - L1_Mur3 LINE L1 -1761 4382 3961 2 658 353 143 29 0 chr11 9676163 9676233 -112167623 + (CATA)n Simple_repeat Simple_repeat 3 74 0 2 658 3211 39 0 3 chr11 9676329 9676717 -112167139 - L1Md_F3 LINE L1 -8 6576 6190 2 658 4804 59 2 2 chr11 9676718 9677362 -112166494 + L1_Mm LINE L1 4679 5322 -561 2 658 417 335 46 34 chr11 9677353 9677767 -112166089 - L1_Mur3 LINE L1 -3098 3045 2627 2 658 271 308 210 0 chr11 9677784 9677927 -112165929 + Lx8 LINE L1 6643 6815 -658 2 658 5014 70 5 0 chr11 9677950 9678588 -112165268 - L1_Mus1 LINE L1 0 6567 5927 2 658 1308 46 0 17 chr11 9678588 9678764 -112165092 + L1_Mus1 LINE L1 5588 5760 -807 2 658 1657 250 99 27 chr11 9678780 9679367 -112164489 + Lx8 LINE L1 6840 7468 -5 2 658 195 338 14 0 chr11 9680133 9680204 -112163652 - L2a LINE L2 0 3426 3355 2 658 210 229 21 10 chr11 9680650 9680747 -112163109 + (TG)n Simple_repeat Simple_repeat 1 98 0 2 658 348 287 128 63 chr11 9681664 9681797 -112162059 - PB1 SINE Alu -5 144 6 2 658 1875 185 26 17 chr11 9682204 9682556 -112161300 + MTC LTR MaLR 1 355 -66 2 658 6953 168 57 8 chr11 9682566 9684010 -112159846 - Lx3B LINE L1 -49 5828 4314 2 658 7224 121 27 19 chr11 9684010 9685135 -112158721 + Lx3B LINE L1 5838 6971 -2 2 658 205 237 0 0 chr11 9685139 9685177 -112158679 + (CAG)n Simple_repeat Simple_repeat 1 38 0 2 658 766 215 20 0 chr11 9685189 9685338 -112158518 - Lx5 LINE L1 -388 6662 6511 2 658 324 64 0 0 chr11 9685541 9685588 -112158268 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 658 21 0 0 0 chr11 9685644 9685665 -112158191 + AT_rich Low_complexity Low_complexity 1 21 0 2 658 450 0 0 0 chr11 9685672 9685722 -112158134 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 658 363 44 0 0 chr11 9685722 9685767 -112158089 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 658 978 306 48 45 chr11 9685780 9686158 -112157698 - L1M2 LINE L1 -1092 5051 4655 2 658 390 57 0 0 chr11 9686158 9686211 -112157645 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 658 978 308 52 44 chr11 9686211 9686752 -112157104 - L1M2 LINE L1 -1489 4654 4082 2 658 560 27 14 0 chr11 9686780 9686854 -112157002 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 658 333 0 0 0 chr11 9686854 9686890 -112156966 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 658 304 258 24 24 chr11 9687030 9687157 -112156699 + (TA)n Simple_repeat Simple_repeat 1 127 0 2 658 683 331 5 12 chr11 9687171 9687459 -112156397 - Lx9 LINE L1 -311 7333 6954 2 658 549 303 29 57 chr11 9687577 9687752 -112156104 - B3A SINE B2 0 198 29 2 658 389 323 43 8 chr11 9687804 9688038 -112155818 - L1M2 LINE L1 -3100 3043 2802 2 658 1147 128 11 16 chr11 9688056 9688083 -112155773 - B2_Mm2 SINE B2 -13 182 157 2 658 347 0 0 23 chr11 9688083 9688127 -112155729 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 2 658 1147 128 11 16 chr11 9688127 9688281 -112155575 - B2_Mm2 SINE B2 -39 156 3 2 658 383 286 57 57 chr11 9688532 9688577 -112155279 + CYRA11_Mm Unknown Y-chromosome 127 171 -446 2 658 800 178 7 7 chr11 9688577 9688730 -112155126 - URR1A DNA MER1_type 0 226 74 2 658 4125 242 45 86 chr11 9688800 9690976 -112152880 + Lx7 LINE L1 843 2926 -2954 2 658 5415 72 10 1 chr11 9690972 9691752 -112152104 - L1_Mus1 LINE L1 -239 6328 5543 2 658 1905 69 8 0 chr11 9691752 9691999 -112151857 + L1_Mus1 LINE L1 6319 6567 0 2 658 1449 250 39 66 chr11 9692057 9692758 -112151098 + Lx7 LINE L1 2904 3585 -2295 2 658 476 132 12 0 chr11 9692788 9692871 -112150985 + (TC)n Simple_repeat Simple_repeat 2 85 0 2 658 1613 268 52 36 chr11 9692890 9694156 -112149700 - Lx6 LINE L1 0 7460 5885 2 658 632 82 297 9 chr11 9694156 9694261 -112149595 + B1_Mus1 SINE Alu 2 139 -9 2 658 492 0 0 42 chr11 9694261 9694332 -112149524 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 2 658 1462 263 72 56 chr11 9694337 9694433 -112149423 - Lx6 LINE L1 -1166 5884 5794 2 658 3951 48 2 0 chr11 9694433 9694907 -112148949 - MT2C_Mm LTR ERVL 0 475 1 2 658 1462 263 72 56 chr11 9694907 9694994 -112148862 - Lx6 LINE L1 -1257 5793 5708 2 658 4323 94 0 17 chr11 9694999 9695596 -112148260 + LTRIS_Mus LTR ERV1 1 587 0 2 658 1871 175 75 90 chr11 9695597 9696025 -112147831 - Lx6 LINE L1 -399 5481 5049 2 658 1051 100 0 0 chr11 9696025 9696165 -112147691 - B1_Mm SINE Alu -7 140 1 2 658 1871 175 75 90 chr11 9696165 9696270 -112147586 - Lx6 LINE L1 -832 5048 4956 2 658 2020 223 66 4 chr11 9696335 9696883 -112146973 + Lx7 LINE L1 3617 4198 -1682 2 658 227 171 0 0 chr11 9696935 9696970 -112146886 + U2 snRNA snRNA 1 35 -153 2 658 3024 265 26 16 chr11 9696994 9698005 -112145851 + Lx7 LINE L1 4863 5891 -1805 2 658 1370 202 103 26 chr11 9698005 9698356 -112145500 + ORR1C1 LTR MaLR 1 378 0 2 658 1195 260 17 28 chr11 9698356 9698410 -112145446 + Lx7 LINE L1 5892 5942 -1754 2 658 1175 283 16 11 chr11 9698406 9698774 -112145082 + Lx7 LINE L1 6665 7034 -662 2 658 400 372 72 62 chr11 9698844 9699234 -112144622 - MT2A LTR ERVL -7 526 133 2 658 308 254 47 47 chr11 9699256 9699290 -112144566 - Ricksha_c DNA MuDR -1672 376 343 2 82 986 314 61 12 chr11 9699290 9699799 -112144057 - ERVL-int LTR ERVL -1 5756 5223 2 659 542 277 39 0 chr11 9699808 9699963 -112143893 + ERVL-B4-int LTR ERVL 3996 4156 -1558 2 659 643 302 62 21 chr11 9699963 9700254 -112143602 - ERVL-int LTR ERVL -489 5272 4970 2 659 334 297 16 33 chr11 9700424 9700546 -112143310 + L1_Rod LINE L1 513 632 -6976 2 659 3013 214 51 20 chr11 9700596 9701820 -112142036 + L1_Rod LINE L1 724 2002 -3845 2 659 891 229 11 34 chr11 9701822 9702089 -112141767 - L1_Rod LINE L1 -3289 2558 2298 2 659 231 208 0 19 chr11 9702072 9702126 -112141730 - RMER1B Other Other -64 1002 950 2 659 2074 230 183 34 chr11 9702147 9702845 -112141011 - RMER1B Other Other -216 850 49 2 659 21 0 0 0 chr11 9703052 9703073 -112140783 + AT_rich Low_complexity Low_complexity 1 21 0 2 659 4577 243 71 42 chr11 9703200 9703608 -112140248 - Lx5 LINE L1 -7 7043 6643 2 659 369 0 0 0 chr11 9703608 9703649 -112140207 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 659 15786 185 32 24 chr11 9703649 9707707 -112136149 - Lx5 LINE L1 -408 6642 2514 2 659 4424 12 2 0 chr11 9707707 9708199 -112135657 + MT2_Mm LTR ERVL 1 493 0 2 659 45291 14 6 0 chr11 9708204 9713525 -112130331 + MERVL-int LTR ERVL 6 5360 -125 2 659 383 167 46 35 chr11 9713525 9713612 -112130244 + ORR1A3-int LTR MaLR 553 640 -1323 2 659 3370 207 26 108 chr11 9713627 9713650 -112130206 - Lx5 LINE L1 -3340 2537 2519 2 659 4424 12 2 0 chr11 9713650 9714142 -112129714 + MT2_Mm LTR ERVL 1 493 0 2 659 3370 207 26 108 chr11 9714142 9715050 -112128806 - Lx5 LINE L1 -3359 2518 1696 2 659 2590 73 6 17 chr11 9715050 9715412 -112128444 + L1Md_F2 LINE L1 6216 6573 -9 2 659 3370 207 26 108 chr11 9715412 9715598 -112128258 - Lx5 LINE L1 -4182 1695 1511 2 659 655 296 75 40 chr11 9715675 9716104 -112127752 + L1MA6 LINE L1 5797 6240 -60 2 659 983 114 4 0 chr11 9716105 9716334 -112127522 + (TCTA)n Simple_repeat Simple_repeat 1 229 0 2 659 218 384 29 43 chr11 9716716 9716855 -112127001 - L2 LINE L2 -1876 1543 1407 2 659 886 312 43 43 chr11 9717220 9717639 -112126217 + MTD LTR MaLR 1 419 0 2 659 1057 132 0 8 chr11 9717891 9718128 -112125728 + (GA)n Simple_repeat Simple_repeat 1 234 0 2 659 1035 155 0 17 chr11 9719033 9719210 -112124646 - B2_Mm2 SINE B2 -20 175 2 2 659 5127 2 0 0 chr11 9719405 9719968 -112123888 + L1Md_A LINE L1 6020 6582 0 3 659 265 287 70 0 chr11 9720419 9720576 -112123280 - L1_Mur3 LINE L1 -995 4885 4718 3 659 652 180 9 0 chr11 9721274 9721385 -112122471 - RLTR26 LTR ERVK 0 642 531 3 659 1914 185 37 44 chr11 9721432 9721840 -112122016 - RLTR26 LTR ERVK -237 405 1 3 659 302 262 7 103 chr11 9722840 9722976 -112120880 + Lx2B LINE L1 6868 6990 -10 3 659 303 219 40 14 chr11 9723263 9723337 -112120519 - URR1B DNA MER1_type 0 225 150 3 659 482 340 38 0 chr11 9724033 9724192 -112119664 - B3A SINE B2 -29 169 5 3 659 6480 206 30 23 chr11 9724288 9725187 -112118669 - Lx5 LINE L1 0 7050 6140 3 659 450 0 0 0 chr11 9725187 9725237 -112118619 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 659 405 0 0 0 chr11 9725237 9725281 -112118575 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 659 6480 206 30 23 chr11 9725281 9725733 -112118123 - Lx5 LINE L1 -911 6139 5690 3 659 3780 95 46 0 chr11 9726551 9727076 -112116780 + L1_Mus1 LINE L1 6018 6566 -1 3 659 299 202 71 73 chr11 9727629 9727732 -112116124 + MLT2B2 LTR ERVL 6 112 -442 3 659 924 76 15 0 chr11 9728456 9728588 -112115268 + L1_Mus2 LINE L1 6433 6566 0 3 659 651 312 171 55 chr11 9729182 9729545 -112114311 + MLT2B1 LTR ERVL 1 405 -115 3 659 361 51 17 0 chr11 9729778 9729837 -112114019 - L1Md_F2 LINE L1 0 6582 6523 3 659 3748 62 11 0 chr11 9729988 9730458 -112113398 + MT2C_Mm LTR ERVL 1 475 0 3 659 531 31 0 0 chr11 9730528 9730593 -112113263 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 3 659 222 37 0 0 chr11 9731159 9731186 -112112670 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 659 238 281 68 48 chr11 9731272 9731478 -112112378 - L1ME3B LINE L1 -178 6062 5853 3 659 1480 265 79 15 chr11 9732171 9732565 -112111291 - MTC LTR MaLR -2 419 1 3 659 478 335 65 19 chr11 9732619 9732835 -112111021 - MLT2D LTR ERVL -50 364 139 3 659 552 252 24 4 chr11 9732841 9733019 -112110837 + MTE2b LTR MaLR 3 190 -189 3 659 29277 125 5 22 chr11 9733196 9739297 -112104559 + L1_Mus2 LINE L1 149 6565 -1 3 659 1110 147 45 0 chr11 9740335 9740512 -112103344 - MERVK26-int LTR ERVK -3228 3691 3507 3 659 1818 129 33 16 chr11 9740512 9740819 -112103037 + Lx2A1 LINE L1 6697 7008 0 3 659 1507 297 49 46 chr11 9741134 9741805 -112102051 + Lx9 LINE L1 6900 7572 -72 3 659 539 15 15 0 chr11 9742273 9742341 -112101515 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 659 358 318 135 16 chr11 9742472 9742805 -112101051 - L1MD LINE L1 -824 5322 4940 3 659 234 0 0 0 chr11 9742931 9742957 -112100899 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 659 209 175 32 0 chr11 9743259 9743322 -112100534 + (CACAC)n Simple_repeat Simple_repeat 3 67 0 3 659 389 20 0 20 chr11 9743331 9743382 -112100474 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 3 659 1037 89 0 0 chr11 9743382 9743517 -112100339 - B1_Mm SINE Alu -12 135 1 3 659 605 278 143 66 chr11 9743583 9743918 -112099938 - RLTR9A LTR ERVK 0 368 8 3 659 1774 214 58 38 chr11 9744589 9745085 -112098771 - RLTR19C LTR ERVK 0 506 1 3 659 21 0 0 0 chr11 9745976 9745997 -112097859 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 523 40 27 0 chr11 9746628 9746702 -112097154 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 659 337 292 0 0 chr11 9746815 9746904 -112096952 + MLT1D LTR MaLR 408 496 -9 3 659 369 167 0 0 chr11 9746947 9747007 -112096849 + URR1B DNA MER1_type 165 224 -1 3 659 414 0 0 0 chr11 9749186 9749232 -112094624 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 659 4975 68 1 1 chr11 9749302 9749951 -112093905 + L1_Mus1 LINE L1 5918 6566 -1 3 659 270 0 0 0 chr11 9751797 9751827 -112092029 + (A)n Simple_repeat Simple_repeat 1 30 0 3 659 645 287 96 38 chr11 9751934 9752195 -112091661 + MTD LTR MaLR 23 298 -121 3 659 5235 133 40 1 chr11 9752195 9753177 -112090679 + L1_Mur2 LINE L1 477 1500 -4377 3 659 19474 159 27 13 chr11 9753175 9757934 -112085922 - L1VL2 LINE L1 -353 5530 375 3 659 263 355 25 25 chr11 9759076 9759219 -112084637 - MER5A1 DNA MER1_type -8 158 16 3 659 801 281 20 0 chr11 9760047 9760250 -112083606 + B3 SINE B2 1 207 -9 3 659 649 218 17 23 chr11 9760505 9760679 -112083177 - B2_Mm2 SINE B2 -18 177 5 3 659 397 247 0 0 chr11 9760710 9760791 -112083065 - MTC LTR MaLR -105 316 236 3 659 2447 298 39 14 chr11 9761095 9761872 -112081984 + Lx7 LINE L1 6534 7329 -367 3 659 210 91 0 0 chr11 9761927 9761960 -112081896 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 3 659 4035 98 32 3 chr11 9762173 9762758 -112081098 - Lx LINE L1 0 6654 6053 3 659 592 139 0 25 chr11 9762824 9762942 -112080914 + GA-rich Low_complexity Low_complexity 2 116 0 3 659 244 289 108 50 chr11 9762947 9763187 -112080669 + L1MCa LINE L1 1101 1354 -5154 3 659 691 320 83 30 chr11 9763401 9763904 -112079952 - L1MCa LINE L1 -5825 683 154 3 659 285 100 0 0 chr11 9763949 9763999 -112079857 + (TTG)n Simple_repeat Simple_repeat 2 51 0 3 659 306 0 0 0 chr11 9764447 9764481 -112079375 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 659 235 309 0 0 chr11 9764606 9764674 -112079182 - ID2 SINE ID -13 70 3 3 659 342 314 90 14 chr11 9766545 9766741 -112077115 + MLT2D LTR ERVL 15 225 -189 3 659 366 80 0 0 chr11 9767050 9767100 -112076756 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 659 27 108 0 0 chr11 9767677 9767788 -112076068 + AT_rich Low_complexity Low_complexity 1 111 0 3 659 378 0 0 0 chr11 9768201 9768243 -112075613 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 659 23 0 0 0 chr11 9768317 9768340 -112075516 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 294 179 0 0 chr11 9769099 9769155 -112074701 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 659 573 296 15 7 chr11 9770612 9770748 -112073108 + RSINE1 SINE B4 6 142 -23 3 659 13715 132 19 34 chr11 9770866 9773610 -112070246 + L1VL4 LINE L1 196 2950 -609 3 659 216 0 0 0 chr11 9773610 9773634 -112070222 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 659 13715 111 19 38 chr11 9773634 9773945 -112069911 + L1VL4 LINE L1 2951 3203 -356 3 659 2731 175 112 35 chr11 9773945 9774888 -112068968 + RLTR13D1 LTR ERVK 1 1023 0 3 659 1000 141 20 25 chr11 9774888 9775008 -112068848 + L1_Mur1 LINE L1 3552 3668 -2218 3 659 459 0 0 0 chr11 9775008 9775059 -112068797 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 659 1000 141 20 25 chr11 9775059 9775135 -112068721 + L1_Mur1 LINE L1 3669 3747 -2139 3 659 3081 147 15 9 chr11 9775135 9775206 -112068650 + L1_Mm LINE L1 3588 3665 -2218 3 659 423 0 0 0 chr11 9775206 9775253 -112068603 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 659 3081 147 15 9 chr11 9775253 9775723 -112068133 + L1_Mm LINE L1 3666 4132 -1751 3 659 6457 103 13 22 chr11 9775718 9776695 -112067161 + L1_Mus3 LINE L1 5671 6638 0 3 659 456 314 138 98 chr11 9777379 9777434 -112066422 + MER2 DNA MER2_type 2 83 -262 3 659 573 15 0 0 chr11 9777434 9777500 -112066356 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 3 659 456 314 138 98 chr11 9777500 9777675 -112066181 + MER2 DNA MER2_type 84 253 -92 3 659 5275 124 58 12 chr11 9777675 9778530 -112065326 + Lx3C LINE L1 6076 6970 -6 3 659 448 314 138 98 chr11 9778530 9778623 -112065233 + MER2 DNA MER2_type 254 339 -6 3 659 532 269 120 40 chr11 9778664 9778889 -112064967 - MER31B LTR ERV1 -2 464 222 3 659 1443 167 52 59 chr11 9779593 9780093 -112063763 - IAPLTR2a LTR ERVK 0 475 1 3 659 210 102 19 58 chr11 9780094 9780146 -112063710 + A-rich Low_complexity Low_complexity 4 53 0 3 659 532 330 149 16 chr11 9780150 9780473 -112063383 + L1MCa LINE L1 924 1289 -5219 3 659 1503 260 62 0 chr11 9780664 9780857 -112062999 - MTD LTR MaLR -15 404 202 3 659 423 0 0 0 chr11 9780857 9780904 -112062952 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 659 1503 260 62 0 chr11 9780904 9781083 -112062773 - MTD LTR MaLR -218 201 10 3 659 378 85 0 0 chr11 9781236 9781295 -112062561 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 3 659 307 273 147 29 chr11 9781340 9781442 -112062414 - PB1D10 SINE Alu -6 114 1 3 659 243 283 54 0 chr11 9781442 9781534 -112062322 - L1MA9 LINE L1 -188 6124 6028 3 659 981 252 86 60 chr11 9781832 9782297 -112061559 + RMER3D-int LTR ERVK 1 477 -2365 3 659 512 264 45 60 chr11 9782298 9782578 -112061278 - LTRIS5 LTR ERV1 -6 513 233 3 659 19188 274 35 40 chr11 9782688 9790172 -112053684 - RLTR6-int LTR ERV1 0 7778 29 3 659 517 228 64 61 chr11 9790172 9790443 -112053413 - LTRIS5 LTR ERV1 -43 611 243 3 659 452 222 25 8 chr11 9790718 9790836 -112053020 + RMER3D-int LTR ERVK 489 608 -2234 3 659 6094 193 59 51 chr11 9790873 9792682 -112051174 + RMER3D-int LTR ERVK 1015 2837 -5 3 659 3087 177 89 5 chr11 9792687 9793306 -112050550 + RLTR17 LTR ERVK 1 671 -21 3 659 451 167 0 38 chr11 9793307 9793413 -112050443 + (TTA)n Simple_repeat Simple_repeat 2 103 0 3 659 1559 86 69 4 chr11 9793414 9793659 -112050197 - L1Md_F2 LINE L1 -2 6580 6320 3 659 216 176 0 0 chr11 9793660 9793694 -112050162 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 3 659 747 55 0 45 chr11 9793694 9793826 -112050030 + (GAGAA)n Simple_repeat Simple_repeat 5 130 0 3 659 414 277 111 39 chr11 9793875 9794333 -112049523 - L1M3 LINE L1 -1263 4877 4387 3 659 380 276 94 0 chr11 9794333 9794514 -112049342 - Tigger7 DNA MER2_type -26 2465 2268 3 659 633 229 14 0 chr11 9794516 9794660 -112049196 + B1_Mus1 SINE Alu 3 148 0 3 659 1523 333 52 2 chr11 9794827 9795351 -112048505 - Tigger7 DNA MER2_type -1910 581 32 3 659 705 294 86 26 chr11 9795997 9796579 -112047277 - L1M2 LINE L1 -487 5813 5208 3 659 288 0 0 0 chr11 9796582 9796614 -112047242 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 659 366 293 24 22 chr11 9796899 9797100 -112046756 + L1MB7 LINE L1 5706 5908 -270 3 659 369 0 0 0 chr11 9797688 9797729 -112046127 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 659 848 281 52 42 chr11 9797899 9798496 -112045360 + L1MC LINE L1 3404 4006 -2140 3 659 356 326 16 86 chr11 9798611 9798856 -112045000 + L1MC LINE L1 4163 4390 -1756 3 659 1017 270 94 41 chr11 9800154 9800517 -112043339 + RLTR14 LTR ERV1 1 382 0 3 659 1634 211 53 0 chr11 9801277 9801595 -112042261 + ORR1C1 LTR MaLR 1 335 -43 3 659 2193 204 93 10 chr11 9801600 9802076 -112041780 + Lx5 LINE L1 6516 7031 -19 4 659 201 39 0 0 chr11 9802076 9802102 -112041754 + (TAAG)n Simple_repeat Simple_repeat 2 27 0 4 659 2193 204 93 10 chr11 9802102 9802119 -112041737 + Lx5 LINE L1 7032 7049 -1 4 659 268 192 58 0 chr11 9802134 9802186 -112041670 + ORR1C1 LTR MaLR 324 378 0 3 659 180 96 77 0 chr11 9802686 9802738 -112041118 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 4 659 243 283 88 20 chr11 9802895 9803201 -112040655 + L1MB7 LINE L1 4982 5308 -838 4 659 1935 86 109 29 chr11 9803270 9803619 -112040237 - Lx3_Mus LINE L1 -682 6327 5951 4 659 262 293 52 0 chr11 9803854 9803970 -112039886 + L1MB7 LINE L1 5793 5914 -270 4 659 1372 232 34 102 chr11 9806353 9806861 -112036995 + RLTR14-int LTR ERV1 4017 4489 -828 4 659 1747 185 26 0 chr11 9807058 9807398 -112036458 + RLTR14-int LTR ERV1 4485 4833 -484 4 659 1122 201 70 119 chr11 9807596 9808110 -112035746 + RLTR14-int LTR ERV1 4829 5317 0 4 659 534 43 0 0 chr11 9808555 9808624 -112035232 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 659 315 121 0 0 chr11 9808631 9808689 -112035167 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 659 336 48 0 0 chr11 9809534 9809576 -112034280 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 659 270 0 0 0 chr11 9809576 9809605 -112034251 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 659 26 30 0 0 chr11 9809964 9809997 -112033859 + AT_rich Low_complexity Low_complexity 1 33 0 4 659 260 329 41 41 chr11 9812295 9812466 -112031390 + L2a LINE L2 3246 3416 -10 4 659 1080 253 118 45 chr11 9813339 9813824 -112030032 + Lx9 LINE L1 6947 7466 -178 4 659 293 139 48 19 chr11 9813861 9813902 -112029954 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 4 659 3201 51 5 10 chr11 9813902 9814300 -112029556 + MTA_Mm LTR MaLR 1 396 0 4 659 467 104 30 9 chr11 9814300 9814428 -112029428 + (TCTA)n Simple_repeat Simple_repeat 1 130 0 4 659 22 56 0 0 chr11 9814473 9814509 -112029347 + AT_rich Low_complexity Low_complexity 1 36 0 4 659 23 0 0 0 chr11 9814967 9814990 -112028866 + AT_rich Low_complexity Low_complexity 1 23 0 4 659 189 74 0 0 chr11 9815069 9815096 -112028760 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 4 659 1167 62 7 0 chr11 9815099 9815244 -112028612 - B1_Mm SINE Alu -1 146 1 4 659 296 235 0 0 chr11 9815287 9815338 -112028518 - B4A SINE B4 -240 52 2 4 659 7205 79 5 2 chr11 9815570 9816764 -112027092 - L1_Mus1 LINE L1 0 6567 5370 4 659 10716 124 4 1 chr11 9816759 9818537 -112025319 - L1_Mus1 LINE L1 -2125 3758 1975 4 659 4911 131 47 4 chr11 9818537 9819697 -112024159 - L1_Mus1 LINE L1 -4435 1448 184 4 659 538 318 78 71 chr11 9820182 9820646 -112023210 + RLTR11A2 LTR ERVK 1 467 -60 4 659 1162 308 33 11 chr11 9821504 9821865 -112021991 + MTEb LTR MaLR 3 371 -8 4 659 21 0 0 0 chr11 9821872 9821893 -112021963 + AT_rich Low_complexity Low_complexity 1 21 0 4 659 1373 153 82 6 chr11 9821897 9822212 -112021644 - L1_Mur3 LINE L1 -2547 3333 2995 4 659 447 68 0 0 chr11 9822212 9822271 -112021585 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 4 659 882 166 74 0 chr11 9822272 9822435 -112021421 - B2_Mm2 SINE B2 -18 177 3 4 659 651 350 53 11 chr11 9822455 9822816 -112021040 - Lx6 LINE L1 -26 7434 7059 4 659 1274 187 9 46 chr11 9822860 9823185 -112020671 - L1_Mur3 LINE L1 -2875 3005 2693 4 659 227 222 19 0 chr11 9823327 9823381 -112020475 + L1MEg LINE L1 1070 1124 -4960 4 659 6158 92 10 3 chr11 9823782 9824670 -112019186 + L1Md_F2 LINE L1 5689 6582 0 4 659 2517 41 0 6 chr11 9824683 9825001 -112018855 - L1Md_F2 LINE L1 -133 6449 6134 4 659 678 46 127 9 chr11 9825001 9825111 -112018745 + L1Md_F2 LINE L1 6452 6574 -8 4 659 24 0 0 0 chr11 9825555 9825579 -112018277 + AT_rich Low_complexity Low_complexity 1 24 0 4 659 451 78 13 13 chr11 9825688 9825766 -112018090 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 659 2123 154 23 21 chr11 9826474 9826891 -112016965 + Lx5 LINE L1 906 1320 -5766 4 659 3116 59 10 0 chr11 9826891 9827283 -112016573 + MTA_Mm LTR MaLR 1 396 0 4 659 2123 139 42 13 chr11 9827283 9827614 -112016242 + Lx5 LINE L1 1321 1667 -4210 4 659 15176 166 64 31 chr11 9827611 9828351 -112015505 + Lx5 LINE L1 2383 3133 -2744 4 659 3186 68 12 5 chr11 9828351 9828782 -112015074 + L1_Mus3 LINE L1 6200 6633 -5 4 82 15176 166 64 31 chr11 9828782 9831309 -112012547 + Lx5 LINE L1 3134 5798 -79 4 660 1220 41 7 0 chr11 9831309 9831455 -112012401 + B1_Mus1 SINE Alu 1 147 -1 4 660 15176 177 69 41 chr11 9831455 9831795 -112012061 + Lx5 LINE L1 5799 6127 -923 4 660 423 0 0 0 chr11 9831795 9831842 -112012014 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 660 6085 182 72 46 chr11 9831842 9832596 -112011260 + Lx5 LINE L1 6128 6913 -137 4 660 426 65 0 0 chr11 9832596 9832658 -112011198 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 660 512 30 15 0 chr11 9832658 9832723 -112011133 + (GA)n Simple_repeat Simple_repeat 1 67 0 4 660 6085 182 72 46 chr11 9832723 9832827 -112011029 + Lx5 LINE L1 6914 7045 -5 4 660 2228 123 10 17 chr11 9833474 9833753 -112010103 - L1_Mm LINE L1 -353 5530 5253 4 660 470 17 17 0 chr11 9833753 9833812 -112010044 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 660 2228 123 10 17 chr11 9833812 9833936 -112009920 - L1_Mm LINE L1 -631 5252 5131 4 660 22 0 0 0 chr11 9833936 9833958 -112009898 + AT_rich Low_complexity Low_complexity 1 22 0 4 660 8087 23 1 0 chr11 9833958 9835193 -112008663 - L1Md_T LINE L1 0 6582 5346 4 660 5489 12 0 0 chr11 9835193 9835849 -112008007 + L1Md_T LINE L1 4700 5355 -528 4 660 7354 63 4 7 chr11 9835848 9836835 -112007021 - L1Md_F2 LINE L1 -12 6570 5587 4 660 11899 69 5 1 chr11 9836846 9838563 -112005293 - L1Md_F LINE L1 -2546 3337 1615 4 660 357 226 48 0 chr11 9838557 9838641 -112005215 - L1Md_F LINE L1 -6049 567 480 4 660 1204 149 31 5 chr11 9838641 9838864 -112004992 - L1VL1 LINE L1 -6156 266 38 4 660 420 285 26 33 chr11 9839508 9839656 -112004200 + RLTR16 LTR ERVK 31 220 -321 4 660 414 39 0 0 chr11 9839780 9839832 -112004024 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 660 1253 229 118 22 chr11 9839841 9840289 -112003567 - RMER4B LTR ERVK -11 574 51 4 660 393 22 0 0 chr11 9840300 9840346 -112003510 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 660 621 164 0 0 chr11 9840346 9840505 -112003351 + GA-rich Low_complexity Low_complexity 2 160 0 4 660 1732 182 40 74 chr11 9840658 9841062 -112002794 - ORR1B1 LTR MaLR 0 394 5 4 660 2969 71 10 0 chr11 9841063 9841455 -112002401 - MTA_Mm LTR MaLR 0 396 1 4 660 186 43 0 0 chr11 9842577 9842600 -112001256 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 660 381 58 0 0 chr11 9842804 9842856 -112001000 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 660 217 315 119 30 chr11 9845351 9845485 -111998371 - MIRc SINE MIR -105 163 18 4 660 8129 28 0 0 chr11 9845521 9846719 -111997137 - L1Md_A LINE L1 -1 6581 5384 4 660 303 26 0 0 chr11 9846719 9846757 -111997099 + tRNA-Ile-ATA tRNA tRNA 1 38 -39 4 660 21 0 0 0 chr11 9847291 9847312 -111996544 + AT_rich Low_complexity Low_complexity 1 21 0 4 660 210 71 0 0 chr11 9847550 9847578 -111996278 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 660 316 146 0 68 chr11 9847580 9847628 -111996228 - HAL1-3A_ME LINE L1 -840 2018 1974 4 660 438 20 0 0 chr11 9847628 9847679 -111996177 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 660 351 0 0 0 chr11 9847769 9847808 -111996048 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 660 642 235 22 7 chr11 9847950 9848087 -111995769 - B1_Mur2 SINE Alu -4 145 7 4 660 259 327 44 35 chr11 9849142 9849256 -111994600 + MLT1A LTR MaLR 196 310 -64 4 660 329 328 139 96 chr11 9849286 9849421 -111994435 - MLT1A0 LTR MaLR -46 319 166 4 660 938 18 11 61 chr11 9849421 9849601 -111994255 + (GGGAGA)n Simple_repeat Simple_repeat 1 171 0 4 660 329 328 139 96 chr11 9849601 9849768 -111994088 - MLT1A0 LTR MaLR -200 165 4 4 660 405 0 0 0 chr11 9851404 9851449 -111992407 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 660 243 240 43 79 chr11 9852535 9852675 -111991181 - Lx9 LINE L1 -7 7637 7503 4 660 1192 251 180 54 chr11 9852832 9853417 -111990439 - Lx9 LINE L1 -127 7517 6859 4 660 576 245 28 0 chr11 9853443 9853586 -111990270 + B1_Mus2 SINE Alu 1 147 0 4 660 846 166 11 6 chr11 9853600 9853776 -111990080 + GA-rich Low_complexity Low_complexity 2 178 0 4 660 602 336 80 7 chr11 9853921 9854197 -111989659 + MLT1F2 LTR MaLR 265 560 0 4 660 509 0 16 0 chr11 9856032 9856093 -111987763 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 660 1036 245 57 161 chr11 9856125 9856567 -111987289 - RMER10B LTR ERVL -2 396 1 4 660 371 183 12 35 chr11 9856927 9857012 -111986844 - RMER17C-int LTR ERVK -889 2349 2267 4 660 254 173 0 0 chr11 9856988 9857040 -111986816 - RLTR19-int LTR ERVK -2569 3568 3517 4 660 414 0 0 0 chr11 9857246 9857292 -111986564 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 660 28 29 0 0 chr11 9857539 9857574 -111986282 + AT_rich Low_complexity Low_complexity 1 35 0 4 660 1439 178 99 118 chr11 9858660 9859093 -111984763 - RLTR23 LTR ERV1 -5 425 1 4 660 304 265 45 6 chr11 9859952 9860120 -111983736 + L1MA4A LINE L1 5746 5926 -377 4 660 451 299 93 103 chr11 9860250 9860444 -111983412 + B3A SINE B2 4 195 -3 4 660 557 253 62 66 chr11 9860482 9860750 -111983106 + Lx6 LINE L1 7195 7433 -27 4 660 256 108 0 0 chr11 9860762 9860799 -111983057 + URR1B DNA MER1_type 188 224 -1 4 660 844 327 108 16 chr11 9860970 9861228 -111982628 + B4A SINE B4 9 290 -2 4 660 480 165 0 0 chr11 9861268 9861383 -111982473 + GA-rich Low_complexity Low_complexity 2 116 0 4 660 1657 166 57 38 chr11 9861457 9861771 -111982085 - RLTR13D6 LTR ERVK -582 320 1 4 660 320 0 25 0 chr11 9861789 9861829 -111982027 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 660 189 74 0 0 chr11 9861836 9861863 -111981993 + (T)n Simple_repeat Simple_repeat 1 27 0 4 660 624 89 0 0 chr11 9862129 9862230 -111981626 + (GGAA)n Simple_repeat Simple_repeat 2 102 0 4 660 346 286 124 106 chr11 9862840 9863293 -111980563 + MER65D LTR ERV1 3 463 -10 4 660 786 175 7 42 chr11 9863867 9864010 -111979846 + B1_Mur4 SINE Alu 12 149 -1 4 660 724 256 99 27 chr11 9864198 9864571 -111979285 - L1MA4 LINE L1 -370 5930 5531 4 660 234 241 33 78 chr11 9864576 9864666 -111979190 - RMER4A LTR ERVK -36 430 345 4 660 242 95 24 0 chr11 9865312 9865354 -111978502 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 660 1328 288 62 21 chr11 9865372 9865990 -111977866 + L1_Mur3 LINE L1 3472 4114 -1766 4 660 1463 91 0 39 chr11 9866002 9866231 -111977625 + Lx3B LINE L1 5786 6005 -971 4 660 315 0 0 0 chr11 9866624 9866659 -111977197 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 660 1468 115 22 41 chr11 9866746 9867017 -111976839 + Lx3B LINE L1 5986 6251 -722 4 660 659 180 0 26 chr11 9867017 9867181 -111976675 - MTC LTR MaLR -259 160 8 5 660 216 67 0 0 chr11 9867181 9867211 -111976645 + (CAGTA)n Simple_repeat Simple_repeat 1 30 0 5 660 615 167 68 0 chr11 9867216 9867348 -111976508 - MTC-int LTR MaLR -9 1249 1109 5 660 1286 249 63 18 chr11 9867349 9867680 -111976176 + ORR1D1 LTR MaLR 21 366 -8 5 660 1267 191 28 63 chr11 9867684 9867773 -111976083 + ORR1D1-int LTR MaLR 1 76 -1294 5 660 1843 151 129 67 chr11 9867773 9868193 -111975663 + RLTR41 LTR ERV1 1 446 0 5 660 1267 191 28 63 chr11 9868193 9868388 -111975468 + ORR1D1-int LTR MaLR 77 275 -1095 5 660 1758 225 53 19 chr11 9868401 9868818 -111975038 + RMER10A LTR ERVL 4 434 -8 5 660 733 255 75 28 chr11 9868809 9869023 -111974833 + ORR1D1-int LTR MaLR 270 493 -877 5 660 1080 63 21 0 chr11 9869023 9869165 -111974691 + B1_Mus1 SINE Alu 2 146 -2 5 660 658 292 220 14 chr11 9869551 9869983 -111973873 + ORR1D1-int LTR MaLR 498 1017 -353 5 660 2018 83 31 16 chr11 9870772 9871089 -111972767 - RLTRETN_Mm LTR ERVK 0 322 1 5 660 24170 33 11 10 chr11 9871089 9875667 -111968189 - MMETn-int LTR ERVK 0 4844 180 5 660 2820 37 0 0 chr11 9875638 9875992 -111967864 - ETnERV-int LTR ERVK -2960 354 1 5 660 2030 80 31 16 chr11 9875992 9876309 -111967547 - RLTRETN_Mm LTR ERVK 0 322 1 5 660 2262 186 85 9 chr11 9876759 9877220 -111966636 + RLTR1 LTR ERV1 129 624 0 5 660 2109 203 10 63 chr11 9877361 9877945 -111965911 - RLTR31_Mur LTR ERVK 0 553 1 5 660 268 240 0 0 chr11 9878277 9878327 -111965529 - RMER21B LTR ERV1 -8 834 785 5 660 4081 156 57 39 chr11 9879421 9879975 -111963881 - RMER17A2 LTR ERVK -13 893 328 5 660 291 28 0 0 chr11 9879975 9880011 -111963845 + (GGAGA)n Simple_repeat Simple_repeat 1 36 0 5 660 4081 156 57 39 chr11 9880011 9880305 -111963551 - RMER17A2 LTR ERVK -579 327 30 5 660 6882 68 21 6 chr11 9880750 9881438 -111962418 - L1_Mus2 LINE L1 -6 6560 5873 5 660 182 62 31 0 chr11 9881438 9881470 -111962386 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 660 6882 92 14 6 chr11 9881470 9882148 -111961708 - L1_Mus2 LINE L1 -694 5872 5182 5 660 279 291 23 0 chr11 9882463 9882549 -111961307 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 5 660 640 222 171 86 chr11 9883078 9883417 -111960439 + RLTR9A LTR ERVK 1 368 0 5 660 3314 43 10 0 chr11 9883886 9884278 -111959578 - MTA_Mm LTR MaLR 0 396 1 5 660 222 62 0 0 chr11 9884671 9884703 -111959153 + (T)n Simple_repeat Simple_repeat 1 32 0 5 660 21 0 0 0 chr11 9884885 9884906 -111958950 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 1554 194 113 0 chr11 9886722 9887067 -111956789 - ORR1C2 LTR MaLR 0 384 1 5 660 516 170 32 0 chr11 9887068 9887162 -111956694 - ORR1C2-int LTR MaLR -1 1369 1273 5 660 468 0 0 0 chr11 9887565 9887617 -111956239 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 660 426 297 70 81 chr11 9887889 9888209 -111955647 + L1MCa LINE L1 1385 1789 -5404 5 660 183 274 47 23 chr11 9888274 9888360 -111955496 + L3 LINE CR1 1207 1294 -3195 5 660 4092 86 0 42 chr11 9888660 9889256 -111954600 + L1_Mus2 LINE L1 5995 6565 -1 5 660 370 210 155 42 chr11 9889392 9889631 -111954225 - RMER17A2 LTR ERVK -425 481 216 5 660 259 244 23 23 chr11 9890056 9890144 -111953712 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 660 443 264 55 5 chr11 9890145 9890344 -111953512 + L1MCa LINE L1 2087 2273 -4920 5 660 979 144 0 0 chr11 9890526 9890686 -111953170 + Lx4A LINE L1 6317 6476 -582 5 660 718 78 9 19 chr11 9890697 9890802 -111953054 - B1_Mus2 SINE Alu -1 146 43 5 660 3574 148 14 8 chr11 9890802 9891387 -111952469 + Lx4A LINE L1 6462 7049 -9 5 660 183 225 0 0 chr11 9892140 9892180 -111951676 + MIRc SINE MIR 93 132 -136 5 660 644 228 7 7 chr11 9895937 9896087 -111947769 - Lx9 LINE L1 -503 7141 6992 5 660 731 263 28 32 chr11 9896084 9896300 -111947556 + Lx9 LINE L1 7108 7322 -322 5 660 446 152 86 0 chr11 9896300 9896405 -111947451 + Lx9 LINE L1 7531 7644 0 5 660 3519 75 30 2 chr11 9896537 9897006 -111946850 + RLTR45 LTR ERVK 1 482 0 5 660 579 51 0 0 chr11 9897128 9897207 -111946649 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 660 1765 145 102 0 chr11 9898718 9899022 -111944834 + ORR1B1 LTR MaLR 5 339 -55 5 660 667 92 16 8 chr11 9899022 9899143 -111944713 + L1_Mus3 LINE L1 6515 6636 -2 5 660 263 191 0 0 chr11 9899205 9899252 -111944604 + ORR1B1 LTR MaLR 340 386 -8 5 660 299 313 53 23 chr11 9900123 9900241 -111943615 + ORR1D2 LTR MaLR 2 131 -239 5 660 1245 249 91 130 chr11 9900241 9900410 -111943446 - RMER19C LTR ERVK 0 611 469 5 660 180 0 0 0 chr11 9900410 9900430 -111943426 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 660 1245 249 91 130 chr11 9900430 9900799 -111943057 - RMER19C LTR ERVK -143 468 94 5 660 388 361 27 14 chr11 9900801 9901023 -111942833 + ORR1D2 LTR MaLR 124 348 -22 5 660 273 57 0 0 chr11 9901481 9901516 -111942340 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 660 4273 119 85 77 chr11 9902709 9903566 -111940290 - L1_Mus2 LINE L1 0 6566 5703 5 660 684 223 0 0 chr11 9903566 9903687 -111940169 - B1_Mur2 SINE Alu -16 133 13 5 660 885 230 65 0 chr11 9904501 9904535 -111939321 - B3 SINE B2 -2 214 181 5 660 402 21 0 0 chr11 9904535 9904582 -111939274 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 660 885 230 65 0 chr11 9904582 9904747 -111939109 - B3 SINE B2 -36 180 3 5 660 476 68 14 0 chr11 9904809 9904882 -111938974 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 660 797 322 85 10 chr11 9905043 9905454 -111938402 + Lx8 LINE L1 6776 7217 -256 5 660 354 45 0 0 chr11 9905848 9905892 -111937964 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5 660 28 79 0 0 chr11 9907196 9907259 -111936597 + AT_rich Low_complexity Low_complexity 1 63 0 5 660 629 236 62 76 chr11 9908282 9908507 -111935349 - Lx8 LINE L1 -201 7272 7051 5 660 2251 211 58 10 chr11 9908534 9909052 -111934804 - RMER1B Other Other 0 1066 524 5 660 281 333 0 81 chr11 9909326 9909450 -111934406 + RLTR8 LTR ERVK 252 365 0 5 660 1512 166 28 121 chr11 9910132 9910495 -111933361 - ORR1A4 LTR MaLR 0 329 1 5 660 939 181 204 0 chr11 9910574 9910888 -111932968 + ORR1C2 LTR MaLR 7 384 0 5 660 517 324 0 20 chr11 9910903 9911051 -111932805 + MTEa LTR MaLR 32 176 -203 5 660 3850 218 44 65 chr11 9911059 9911982 -111931874 - RMER13B LTR ERVK 0 908 5 5 660 375 313 87 76 chr11 9911822 9912157 -111931699 + MTEa LTR MaLR 33 370 -9 5 660 185 108 27 0 chr11 9912305 9912342 -111931514 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 660 243 0 0 0 chr11 9912586 9912613 -111931243 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 5 660 1106 89 7 0 chr11 9912613 9912759 -111931097 - B1_Mus2 SINE Alu 0 147 1 5 660 3388 113 30 37 chr11 9913247 9913809 -111930047 + Lx LINE L1 6094 6651 -3 5 660 628 283 7 0 chr11 9914023 9914161 -111929695 + ID_B1 SINE B4 86 224 0 5 660 219 254 0 56 chr11 9914164 9914235 -111929621 + GA-rich Low_complexity Low_complexity 3 69 0 5 660 492 375 65 0 chr11 9914287 9914516 -111929340 - MER47B DNA MER2_type -174 244 1 5 660 1155 199 198 3 chr11 9915660 9915973 -111927883 - ORR1D1 LTR MaLR 0 374 1 5 660 303 28 0 0 chr11 9916296 9916332 -111927524 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 5 660 300 329 70 6 chr11 9918866 9919037 -111924819 - L1ME4a LINE L1 -230 5894 5713 5 660 248 111 0 22 chr11 9919796 9919842 -111924014 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 5 660 243 0 0 0 chr11 9920376 9920403 -111923453 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 660 482 351 6 32 chr11 9920406 9920562 -111923294 - RSINE1 SINE B4 -2 163 12 5 660 800 315 34 4 chr11 9921186 9921419 -111922437 - MTE2a LTR MaLR -67 312 73 5 660 416 76 31 61 chr11 9921427 9921525 -111922331 - L1_Mus3 LINE L1 -25 6613 6519 5 660 303 340 91 43 chr11 9921529 9921858 -111921998 - MER74A LTR ERVL -176 382 39 5 660 2033 55 0 8 chr11 9922533 9922790 -111921066 - L1_Mus1 LINE L1 0 6567 6313 5 660 3156 149 71 46 chr11 9923339 9923391 -111920465 + Lx4B LINE L1 4570 4621 -1256 5 660 279 0 0 0 chr11 9923391 9923422 -111920434 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 660 3156 149 71 46 chr11 9923422 9924043 -111919813 + Lx4B LINE L1 4622 5259 -618 5 660 1079 106 0 0 chr11 9924047 9924198 -111919658 + L1_Mus3 LINE L1 6077 6227 -411 5 660 250 0 0 0 chr11 9924202 9924241 -111919615 + L1_Mus4 LINE L1 6592 6630 -6 5 660 4306 160 38 2 chr11 9924236 9925369 -111918487 + Lx4B LINE L1 5246 6426 -632 5 660 490 72 0 0 chr11 9925370 9925439 -111918417 + L1_Mus2 LINE L1 6488 6556 -10 5 660 690 0 0 32 chr11 9925441 9925534 -111918322 + (GAA)n Simple_repeat Simple_repeat 2 91 0 5 660 761 152 15 0 chr11 9925534 9925666 -111918190 + Lx LINE L1 6003 6136 -518 5 660 825 184 96 4 chr11 9925664 9925907 -111917949 + Lx4B LINE L1 6504 6654 0 5 660 284 307 79 0 chr11 9926189 9926290 -111917566 + PB1D10 SINE Alu 2 110 -7 5 660 26 30 0 0 chr11 9926367 9926400 -111917456 + AT_rich Low_complexity Low_complexity 1 33 0 5 660 27 0 0 0 chr11 9926528 9926555 -111917301 + AT_rich Low_complexity Low_complexity 1 27 0 5 660 738 332 44 27 chr11 9927000 9927015 -111916841 + MTE-int LTR MaLR 1257 1271 -309 5 660 3865 149 117 6 chr11 9927015 9927379 -111916477 + RMER17D2 LTR ERVK 1 378 -431 5 660 1145 28 0 7 chr11 9927379 9927521 -111916335 + (TCTCC)n Simple_repeat Simple_repeat 5 145 0 5 660 3865 149 117 6 chr11 9927521 9927884 -111915972 + RMER17D2 LTR ERVK 379 809 0 5 660 738 332 44 27 chr11 9927884 9928165 -111915691 + MTE-int LTR MaLR 1272 1558 -22 5 660 2009 151 46 89 chr11 9928193 9928608 -111915248 + RLTR23 LTR ERV1 1 397 -33 5 660 313 285 44 88 chr11 9928616 9928904 -111914952 + MTEa LTR MaLR 88 379 0 5 660 5114 89 43 21 chr11 9929310 9930078 -111913778 - RLTR13D1 LTR ERVK -21 785 1 5 660 766 271 32 77 chr11 9930835 9931083 -111912773 - RMER20B LTR ERVK -28 599 363 5 660 207 0 0 0 chr11 9931095 9931118 -111912738 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 660 567 43 0 0 chr11 9931118 9931188 -111912668 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 660 270 207 0 0 chr11 9931366 9931424 -111912432 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 660 563 268 120 5 chr11 9931437 9931628 -111912228 + B3 SINE B2 3 215 -1 5 660 1415 321 49 28 chr11 9931874 9932582 -111911274 - Lx8 LINE L1 -5 7468 6746 5 660 801 316 8 4 chr11 9932596 9932860 -111910996 - Lx8 LINE L1 -808 6665 6401 5 660 345 24 0 0 chr11 9932980 9933022 -111910834 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 660 939 93 0 0 chr11 9933022 9933161 -111910695 + (GA)n Simple_repeat Simple_repeat 1 140 0 5 660 2164 174 35 0 chr11 9934059 9934432 -111909424 + ORR1B1 LTR MaLR 1 386 -8 5 660 302 336 19 89 chr11 9934596 9934753 -111909103 - B1F SINE Alu -3 146 1 5 660 773 302 0 39 chr11 9934753 9934825 -111909031 - ID SINE ID -151 73 10 5 660 387 0 0 0 chr11 9936430 9936473 -111907383 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 660 5329 88 10 1 chr11 9936473 9937205 -111906651 - Lx3A LINE L1 -13 6968 6231 6 660 272 172 17 0 chr11 9937207 9937265 -111906591 - L1_Mur1 LINE L1 -6910 72 14 6 660 1367 62 73 0 chr11 9937606 9937785 -111906071 - MTB LTR MaLR 0 400 209 6 660 1091 56 0 7 chr11 9937771 9937914 -111905942 + MTB LTR MaLR 259 400 0 6 660 2623 40 0 0 chr11 9938268 9938591 -111905265 + IAPEY2_LTR LTR ERVK 32 354 -3 6 660 1851 160 22 6 chr11 9939005 9939319 -111904537 - ORR1A4 LTR MaLR -8 321 3 6 660 295 139 58 19 chr11 9939751 9939905 -111903951 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 6 660 23 54 0 0 chr11 9940152 9940189 -111903667 + AT_rich Low_complexity Low_complexity 1 37 0 6 660 8933 66 0 2 chr11 9940194 9942114 -111901742 - L1Md_F2 LINE L1 0 6582 4666 6 660 1599 257 95 3 chr11 9942719 9943098 -111900758 + MTD LTR MaLR 1 414 -5 6 660 353 237 52 0 chr11 9943103 9943200 -111900656 + MTD-int LTR MaLR 1 102 -1156 6 660 261 138 119 30 chr11 9943218 9943285 -111900571 - MTC-int LTR MaLR -81 1177 1105 6 660 1119 225 43 22 chr11 9943341 9943618 -111900238 + RMER1B Other Other 541 823 -243 6 660 1077 214 168 14 chr11 9943879 9944244 -111899612 - RMER15 LTR ERVL -154 421 1 6 660 563 320 88 64 chr11 9944694 9944910 -111898946 - MLT1A0 LTR MaLR -22 343 113 6 660 2095 142 14 33 chr11 9944910 9945274 -111898582 + RLTR15 LTR ERVK 3 359 0 6 660 563 320 88 64 chr11 9945274 9945387 -111898469 - MLT1A0 LTR MaLR -253 112 6 6 660 233 89 22 0 chr11 9946002 9946047 -111897809 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 660 263 96 19 0 chr11 9946154 9946206 -111897650 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 6 660 767 185 226 14 chr11 9949392 9949603 -111894253 - Lx4B LINE L1 -326 6732 6477 6 660 382 239 23 0 chr11 9949611 9949699 -111894157 + Lx4B LINE L1 6152 6241 -817 6 660 349 258 73 55 chr11 9949831 9949852 -111894004 + CYRA11_Mm Unknown Y-chromosome 154 320 -297 6 660 774 162 49 7 chr11 9949852 9949995 -111893861 - URR1A DNA MER1_type 0 226 78 6 660 2891 73 56 60 chr11 9950001 9950450 -111893406 - L1_Mus3 LINE L1 -4 6634 6188 6 660 390 319 28 35 chr11 9950537 9950680 -111893176 - B1F2 SINE Alu -1 148 7 6 660 212 0 36 0 chr11 9950782 9950810 -111893046 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 660 370 321 137 35 chr11 9951020 9951217 -111892639 + ID_B1 SINE B4 1 217 -7 6 660 233 57 29 0 chr11 9951218 9951253 -111892603 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 660 339 25 0 0 chr11 9951330 9951370 -111892486 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 660 991 299 56 27 chr11 9951379 9951892 -111891964 - MER67C LTR ERV1 -138 573 42 6 660 468 0 0 0 chr11 9952394 9952446 -111891410 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 660 2407 136 41 55 chr11 9952487 9952923 -111890933 + RLTR23 LTR ERV1 1 430 0 6 660 216 97 0 0 chr11 9952933 9952964 -111890892 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 660 302 265 69 0 chr11 9953322 9953424 -111890432 - Lx7 LINE L1 -780 6916 6808 6 660 453 36 0 0 chr11 9953424 9953479 -111890377 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 660 948 234 152 35 chr11 9953480 9953790 -111890066 + Lx7 LINE L1 6479 6824 -872 6 660 1518 170 25 12 chr11 9953797 9954086 -111889770 + RMER6C LTR ERVK 431 753 -3 6 660 960 57 0 0 chr11 9954223 9954346 -111889510 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 6 660 357 387 0 8 chr11 9954747 9954872 -111888984 + B4A SINE B4 169 292 0 6 660 881 217 31 70 chr11 9956517 9956745 -111887111 + URR1A DNA MER1_type 5 223 -3 6 660 525 332 112 18 chr11 9956776 9957052 -111886804 - ORR1E LTR MaLR -55 304 3 6 660 576 314 65 65 chr11 9957808 9958131 -111885725 + ORR1E LTR MaLR 1 323 -36 6 660 479 332 96 92 chr11 9959427 9959961 -111883895 - RLTR18 LTR ERVK -48 568 33 6 660 370 337 86 91 chr11 9960213 9960575 -111883281 + L1MD2 LINE L1 212 571 -5976 6 660 455 180 96 35 chr11 9960683 9960798 -111883058 + ID_B1 SINE B4 95 216 -8 6 660 786 289 11 0 chr11 9960878 9961065 -111882791 + B3 SINE B2 1 189 -27 6 660 238 315 0 0 chr11 9961088 9961180 -111882676 + A-rich Low_complexity Low_complexity 1 92 0 6 82 469 352 45 60 chr11 9961358 9961627 -111882229 + B4A SINE B4 26 290 -2 6 661 467 242 21 0 chr11 9961826 9961921 -111881935 + PB1D9 SINE Alu 14 110 -10 6 661 450 0 0 0 chr11 9961927 9961977 -111881879 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 661 191 180 33 0 chr11 9961991 9962052 -111881804 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 6 661 560 305 92 34 chr11 9962081 9962634 -111881222 + L1ME1 LINE L1 5381 5965 -214 6 661 28 61 0 0 chr11 9963691 9963740 -111880116 + AT_rich Low_complexity Low_complexity 1 49 0 6 661 444 118 0 0 chr11 9964137 9964205 -111879651 + (T)n Simple_repeat Simple_repeat 1 68 0 6 661 1353 144 0 13 chr11 9964243 9964468 -111879388 - Lx2 LINE L1 -1 6996 6775 6 661 3816 156 91 1 chr11 9964471 9965152 -111878704 - Lx2 LINE L1 -357 6640 5899 6 661 9754 98 3 30 chr11 9965152 9967382 -111876474 - L1VL4 LINE L1 -1234 2325 154 6 661 218 238 206 0 chr11 9967705 9967768 -111876088 - B1F1 SINE Alu -6 143 68 6 661 244 339 0 0 chr11 9969150 9969215 -111874641 - ID4 SINE ID -16 67 3 6 661 233 342 86 99 chr11 9970411 9970703 -111873153 + ORR1E LTR MaLR 22 309 -50 6 661 24 0 0 0 chr11 9971809 9971833 -111872023 + AT_rich Low_complexity Low_complexity 1 24 0 6 661 198 0 0 0 chr11 9974195 9974217 -111869639 + (T)n Simple_repeat Simple_repeat 1 22 0 6 661 459 0 0 0 chr11 9974405 9974456 -111869400 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 661 21879 121 103 34 chr11 9974521 9978931 -111864925 + L1VL4 LINE L1 758 5466 -417 6 661 4044 85 3 7 chr11 9978917 9979642 -111864214 - L1_Mus2 LINE L1 -399 6167 5446 6 661 431 355 57 85 chr11 9979773 9980161 -111863695 + MT2A LTR ERVL 5 381 -152 6 661 579 116 0 0 chr11 9980171 9980283 -111863573 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 6 661 231 139 0 0 chr11 9980283 9980319 -111863537 + MLT2B1 LTR ERVL 532 567 0 6 661 2101 320 83 30 chr11 9980737 9981442 -111862414 - Lx8 LINE L1 -12 7461 6715 6 661 3390 33 2 0 chr11 9981442 9981837 -111862019 + MTA_Mm LTR MaLR 1 396 0 6 661 2101 320 83 30 chr11 9981837 9982186 -111861670 - Lx8 LINE L1 -759 6714 6351 6 661 251 242 15 0 chr11 9982183 9982249 -111861607 - Lx8 LINE L1 -3 5844 5778 6 661 287 295 30 18 chr11 9982257 9982426 -111861430 - L1M2 LINE L1 -2994 3149 2979 6 661 966 235 11 58 chr11 9982622 9982900 -111860956 + L1VL4 LINE L1 240 518 -5784 6 661 1122 140 10 15 chr11 9982903 9983106 -111860750 - MusHAL1 LINE L1 -1934 778 577 6 661 828 155 0 7 chr11 9983160 9983303 -111860553 + L1_Mm LINE L1 5515 5656 -227 6 661 1075 150 0 22 chr11 9983301 9983485 -111860371 - L1_Mur1 LINE L1 -795 5091 4912 6 661 24 0 0 0 chr11 9983547 9983571 -111860285 + AT_rich Low_complexity Low_complexity 1 24 0 6 661 728 231 41 102 chr11 9983585 9983928 -111859928 + RLTRETN_Mm LTR ERVK 1 322 0 6 661 286 135 38 19 chr11 9983939 9983992 -111859864 + L1_Mus4 LINE L1 6196 6249 -387 6 661 1595 210 9 15 chr11 9984002 9984335 -111859521 + Lx LINE L1 6322 6652 -2 6 661 7216 142 54 16 chr11 9984360 9985577 -111858279 + Lx2 LINE L1 5642 6904 -93 6 661 1089 309 68 54 chr11 9985586 9985733 -111858123 - L1_Mur3 LINE L1 -3071 2809 2644 6 661 216 0 0 0 chr11 9985733 9985757 -111858099 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 661 1089 309 68 54 chr11 9985757 9986102 -111857754 - L1_Mur3 LINE L1 -3237 2643 2307 6 661 420 20 0 0 chr11 9986102 9986151 -111857705 + (TAA)n Simple_repeat Simple_repeat 3 51 0 6 661 1089 309 68 54 chr11 9986151 9986457 -111857399 - L1_Mur3 LINE L1 -3574 2306 1999 6 661 387 248 72 36 chr11 9986457 9986595 -111857261 + MT2A LTR ERVL 181 323 -210 6 661 232 294 130 0 chr11 9986616 9986708 -111857148 + MLT2B1 LTR ERVL 439 542 -25 6 661 252 282 47 66 chr11 9986859 9986999 -111856857 + MLT1A0 LTR MaLR 261 408 0 6 661 183 42 0 0 chr11 9987943 9987967 -111855889 + (TTA)n Simple_repeat Simple_repeat 2 25 0 6 661 2619 107 23 8 chr11 9988010 9988407 -111855449 + RLTR9D LTR ERVK 1 403 0 6 661 213 276 12 73 chr11 9988416 9988498 -111855358 - B1F SINE Alu -47 102 26 6 661 21 36 0 0 chr11 9988596 9988624 -111855232 + AT_rich Low_complexity Low_complexity 1 28 0 6 661 260 239 88 15 chr11 9988630 9988698 -111855158 - MTE-int LTR MaLR -1289 291 219 6 661 38963 34 1 6 chr11 9988701 9994871 -111848985 - L1Md_T LINE L1 0 6582 452 6 661 333 339 62 47 chr11 9994972 9995164 -111848692 - LTR16A1 LTR ERVL -15 441 247 6 661 340 348 43 8 chr11 9995677 9995893 -111847963 + Lx8 LINE L1 6715 6951 -522 6 661 291 288 43 67 chr11 9996318 9996482 -111847374 + MER89 LTR ERV1 331 490 -69 6 661 403 290 43 14 chr11 9996993 9997133 -111846723 - B1F SINE Alu 0 149 6 6 661 938 271 80 23 chr11 9997795 9998094 -111845762 + RMER15 LTR ERVL 255 570 -5 6 661 209 122 24 0 chr11 9999705 9999746 -111844110 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 661 659 158 98 0 chr11 9999810 9999974 -111843882 + MYSERV16_I-int LTR ERVK 2146 2325 -1 6 661 1489 212 100 96 chr11 10000000 10000501 -111843355 + RLTR11A LTR ERVK 26 528 0 1 661 4192 51 2 4 chr11 10002183 10002696 -111841160 - RLTR1B LTR ERV1 0 512 1 2 661 46 83 0 0 chr11 10002725 10002834 -111841022 + AT_rich Low_complexity Low_complexity 1 109 0 3 661 6426 119 13 9 chr11 10002987 10003966 -111839890 + RLTR13C1 LTR ERVK 1 983 0 4 661 1019 268 59 16 chr11 10004147 10004454 -111839402 + MTE2b LTR MaLR 60 379 0 5 661 33 0 0 0 chr11 10004769 10004802 -111839054 + AT_rich Low_complexity Low_complexity 1 33 0 6 661 276 309 62 26 chr11 10005248 10005361 -111838495 + LTR41 LTR ERVL 115 231 -537 7 661 2139 171 46 5 chr11 10006571 10006981 -111836875 + Lx3B LINE L1 6543 6969 -4 8 661 6656 83 3 16 chr11 10007000 10008229 -111835627 + L1Md_F LINE L1 311 1523 -4360 9 661 29638 114 12 3 chr11 10008229 10009005 -111834851 + L1_Mus2 LINE L1 1296 2070 -3813 1 661 207 69 0 0 chr11 10009005 10009034 -111834822 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 661 29638 113 11 2 chr11 10009034 10013487 -111830369 + L1_Mus2 LINE L1 2071 6566 0 1 661 950 243 143 27 chr11 10013505 10014017 -111829839 + Lx9 LINE L1 2919 3489 -2358 1 661 4123 224 60 62 chr11 10013987 10014149 -111829707 + Lx9 LINE L1 4489 4618 -1229 1 661 215 31 0 30 chr11 10014149 10014182 -111829674 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1 661 4123 236 95 49 chr11 10014182 10016159 -111827697 + Lx9 LINE L1 4619 6803 -841 1 661 26239 136 21 9 chr11 10018106 10023288 -111820568 - L1_Mus3 LINE L1 -2 6636 1392 1 661 3716 74 4 4 chr11 10023288 10023796 -111820060 - L1Md_F2 LINE L1 0 6582 6076 1 661 26239 182 47 19 chr11 10023796 10024797 -111819059 - L1_Mus3 LINE L1 -4492 1391 361 1 661 3304 252 52 40 chr11 10026691 10027988 -111815868 + RMER1A Other Other 7 878 -152 1 661 246 81 0 0 chr11 10027988 10028025 -111815831 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 1 661 258 32 0 0 chr11 10028028 10028059 -111815797 + (CAGT)n Simple_repeat Simple_repeat 4 34 0 1 661 3304 224 66 6 chr11 10028059 10028205 -111815651 + RMER1A Other Other 879 1025 -5 1 661 680 78 0 37 chr11 10028638 10028745 -111815111 + BC1_Mm scRNA scRNA 1 103 -49 1 661 1407 241 69 21 chr11 10029187 10029564 -111814292 - MTD LTR MaLR -14 405 11 2 661 186 133 0 0 chr11 10029587 10029617 -111814239 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 661 323 339 62 9 chr11 10029668 10029781 -111814075 - RSINE1 SINE B4 -43 122 4 2 661 256 303 0 0 chr11 10030246 10030312 -111813544 - B3 SINE B2 -148 68 3 2 661 5103 170 36 6 chr11 10030953 10031864 -111811992 - Lx4B LINE L1 -327 6731 5793 2 661 541 141 0 12 chr11 10031861 10031947 -111811909 + L1_Mur1 LINE L1 4892 4976 -910 2 661 4002 105 2 7 chr11 10031943 10032539 -111811317 + Lx3_Mus LINE L1 5834 6426 -583 2 661 1055 154 12 239 chr11 10032538 10032956 -111810900 - L1_Mur2 LINE L1 -2619 3258 2936 2 661 216 0 0 0 chr11 10033113 10033137 -111810719 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2 661 433 372 49 24 chr11 10033364 10033692 -111810164 + Lx8 LINE L1 6973 7308 -165 2 661 1017 60 13 7 chr11 10035639 10035791 -111808065 + L1Md_F2 LINE L1 6418 6570 -12 3 661 1208 54 0 0 chr11 10035807 10035954 -111807902 + B1_Mus2 SINE Alu 1 147 0 3 661 25 31 0 0 chr11 10036272 10036304 -111807552 + AT_rich Low_complexity Low_complexity 1 32 0 3 661 510 165 73 0 chr11 10036353 10036365 -111807491 - B2_Mm2 SINE B2 -2 193 182 3 661 1159 62 0 0 chr11 10036365 10036511 -111807345 - B1_Mm SINE Alu 0 147 2 3 661 510 165 73 0 chr11 10036511 10036607 -111807249 - B2_Mm2 SINE B2 -14 181 78 3 661 710 41 10 0 chr11 10036625 10036723 -111807133 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 661 1133 83 0 0 chr11 10037005 10037150 -111806706 + B1_Mus2 SINE Alu 2 146 -1 3 661 409 235 0 58 chr11 10037260 10037364 -111806492 - B3 SINE B2 -117 99 2 3 661 224 323 35 76 chr11 10037651 10037795 -111806061 - MIR3 SINE MIR -38 170 33 3 661 289 374 98 0 chr11 10037900 10038074 -111805782 + MIRc SINE MIR 17 207 -61 3 661 23 33 0 0 chr11 10038422 10038452 -111805404 + AT_rich Low_complexity Low_complexity 1 30 0 4 661 229 234 15 59 chr11 10039322 10039390 -111804466 - MER21B LTR ERV1 -289 574 510 4 661 240 325 62 34 chr11 10039571 10039928 -111803928 - L1MD LINE L1 -1774 4372 4006 4 661 316 290 29 51 chr11 10040047 10040185 -111803671 - L1MC LINE L1 -2473 3673 3539 4 661 280 311 162 25 chr11 10040185 10040434 -111803422 + L1MB2 LINE L1 2586 2867 -3276 4 661 29 47 0 0 chr11 10040491 10040534 -111803322 + AT_rich Low_complexity Low_complexity 1 43 0 4 661 533 307 108 74 chr11 10040800 10041659 -111802197 + L1MB2 LINE L1 5266 6147 -24 4 661 244 293 52 22 chr11 10041693 10041829 -111802027 - L1M5 LINE L1 -2601 3545 3406 4 661 676 361 49 41 chr11 10042091 10042458 -111801398 - MLT1F1 LTR MaLR -130 439 70 4 661 22 0 0 0 chr11 10042476 10042498 -111801358 + AT_rich Low_complexity Low_complexity 1 22 0 4 661 669 25 0 0 chr11 10042971 10043050 -111800806 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 661 378 0 0 0 chr11 10043414 10043456 -111800400 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 661 1900 165 108 154 chr11 10043516 10044138 -111799718 + RMER6C LTR ERVK 98 690 0 5 661 363 286 169 37 chr11 10044723 10044912 -111798944 - B3 SINE B2 -2 214 1 5 661 1603 218 19 65 chr11 10044971 10045402 -111798454 - Lx4B LINE L1 -4 7054 6644 5 661 217 176 70 12 chr11 10045669 10045755 -111798101 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 661 32 67 0 0 chr11 10045806 10045866 -111797990 + AT_rich Low_complexity Low_complexity 1 60 0 5 661 32 86 0 0 chr11 10045936 10046017 -111797839 + AT_rich Low_complexity Low_complexity 1 81 0 5 661 3627 120 34 5 chr11 10046283 10046843 -111797013 + Lx3_Mus LINE L1 6433 7008 -1 5 661 205 311 165 18 chr11 10047392 10047556 -111796300 + MER5A DNA MER1_type 2 189 0 5 661 27 29 0 0 chr11 10047725 10047759 -111796097 + AT_rich Low_complexity Low_complexity 1 34 0 5 661 667 226 0 8 chr11 10048169 10048303 -111795553 + B1_Mus1 SINE Alu 1 133 -15 6 661 215 369 51 29 chr11 10048684 10048821 -111795035 - MIRm SINE MIR -114 162 23 6 661 192 320 59 15 chr11 10049946 10050070 -111793786 - MIRm SINE MIR -136 140 5 6 661 568 306 2 41 chr11 10050875 10051020 -111792836 - B3A SINE B2 -57 159 21 6 661 1611 59 0 0 chr11 10051847 10052050 -111791806 - L1_Mus1 LINE L1 -621 5946 5744 6 661 4702 62 5 0 chr11 10052050 10052647 -111791209 + L1_Mus1 LINE L1 5966 6565 -2 6 661 324 316 56 50 chr11 10053219 10053379 -111790477 - MLT1D LTR MaLR -344 161 1 6 661 2144 79 7 7 chr11 10054272 10054565 -111789291 + L1_Mus1 LINE L1 6270 6562 -5 6 661 408 179 0 0 chr11 10054753 10054831 -111789025 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 661 246 246 0 17 chr11 10054844 10054902 -111788954 + (TATG)n Simple_repeat Simple_repeat 3 59 0 6 661 760 235 21 48 chr11 10055063 10055251 -111788605 + B3 SINE B2 34 216 0 6 661 288 53 0 0 chr11 10055287 10055325 -111788531 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 661 3269 56 2 0 chr11 10056740 10057135 -111786721 + MTA_Mm LTR MaLR 1 396 0 7 661 1767 104 11 4 chr11 10057135 10057584 -111786272 + L1_Mus3 LINE L1 6367 6638 0 7 661 20672 179 14 11 chr11 10058060 10059625 -111784231 + Lx2B LINE L1 742 2304 -3582 7 661 2915 72 13 3 chr11 10059625 10060017 -111783839 + MTA_Mm LTR MaLR 1 396 0 7 661 20672 188 16 15 chr11 10060017 10062949 -111780907 + Lx2B LINE L1 2305 5225 -661 7 661 3986 121 23 60 chr11 10062949 10063729 -111780127 + RMER17A LTR ERVK 1 751 0 7 661 20672 167 27 6 chr11 10063729 10065077 -111778779 + Lx2B LINE L1 5226 6598 -402 7 661 2683 84 80 21 chr11 10065077 10065404 -111778452 + L1Md_F2 LINE L1 6166 6515 -67 7 661 195 42 0 0 chr11 10065404 10065428 -111778428 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 7 661 2683 84 80 21 chr11 10065428 10065487 -111778369 + L1Md_F2 LINE L1 6516 6574 -8 7 661 21 0 0 0 chr11 10065576 10065597 -111778259 + AT_rich Low_complexity Low_complexity 1 21 0 7 661 486 0 0 0 chr11 10065653 10065707 -111778149 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 661 2136 159 25 3 chr11 10065712 10066077 -111777779 + Lx2B LINE L1 6624 6996 -4 7 661 2863 260 63 37 chr11 10066105 10067076 -111776780 + L1_Mur3 LINE L1 278 1273 -6455 8 661 1075 213 13 24 chr11 10067078 10067376 -111776480 + L1VL1 LINE L1 1 295 -6127 8 661 32154 78 5 2 chr11 10067364 10073002 -111770854 + L1Md_F LINE L1 98 5751 -132 8 661 5739 47 4 7 chr11 10073002 10073716 -111770140 + L1Md_F2 LINE L1 5871 6582 0 8 661 3661 207 31 60 chr11 10073716 10074912 -111768944 + L1_Mur3 LINE L1 1260 2420 -3460 8 661 2165 43 75 3 chr11 10074960 10075265 -111768591 + MTA_Mm-int LTR MaLR 772 1098 0 8 661 3468 15 5 5 chr11 10075265 10075661 -111768195 + MTA_Mm LTR MaLR 1 396 0 8 661 10211 129 16 33 chr11 10075759 10077420 -111766436 - L1_Mus3 LINE L1 -3 6635 4927 8 661 1051 88 0 45 chr11 10077420 10077533 -111766323 + B1_Mus1 SINE Alu 2 114 -34 8 661 4442 14 0 0 chr11 10077533 10078026 -111765830 - MT2_Mm LTR ERVL 0 493 1 8 661 1051 88 0 45 chr11 10078026 10078066 -111765790 + B1_Mus1 SINE Alu 115 148 0 8 661 10211 174 22 72 chr11 10078066 10079423 -111764433 - L1_Mus3 LINE L1 -960 4926 3578 8 661 1386 257 176 32 chr11 10079426 10079973 -111763883 + Lx9 LINE L1 6857 7479 -165 8 661 315 122 0 0 chr11 10079973 10080022 -111763834 + (TATG)n Simple_repeat Simple_repeat 2 50 0 9 661 1386 257 176 32 chr11 10080022 10080162 -111763694 + Lx9 LINE L1 7480 7643 -1 8 661 6720 122 26 23 chr11 10080488 10082091 -111761765 + L1_Mus3 LINE L1 5010 6638 0 9 661 1487 237 43 20 chr11 10082254 10082603 -111761253 - ORR1B2 LTR MaLR -8 359 3 9 661 298 307 63 63 chr11 10082763 10082937 -111760919 + RMER15 LTR ERVL 399 572 -3 9 661 239 236 47 16 chr11 10084423 10084552 -111759304 + (TA)n Simple_repeat Simple_repeat 2 134 0 9 661 954 302 33 44 chr11 10085108 10085682 -111758174 + L1MA4 LINE L1 5350 5917 -383 9 661 2756 45 0 0 chr11 10085941 10086276 -111757580 - L1_Mus1 LINE L1 0 6567 6233 9 661 345 330 107 76 chr11 10086472 10086669 -111757187 - B3 SINE B2 -6 210 8 9 661 2021 195 10 10 chr11 10086812 10087195 -111756661 + RLTR12B LTR ERVK 143 525 -3 9 661 4202 268 120 93 chr11 10087238 10089863 -111753993 + MYSERV-int LTR ERVK 3856 6550 0 9 661 2671 158 73 4 chr11 10089866 10090360 -111753496 + RLTR12B LTR ERVK 1 528 0 1 661 1313 168 9 0 chr11 10090360 10090592 -111753264 - Lx5 LINE L1 -471 6579 6346 1 661 992 220 105 11 chr11 10090931 10091198 -111752658 + Lx5 LINE L1 6759 7050 0 1 661 343 258 25 0 chr11 10091361 10091481 -111752375 + L1MA8 LINE L1 6139 6261 -30 1 661 203 184 0 0 chr11 10091551 10091589 -111752267 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 661 261 409 17 9 chr11 10091796 10091912 -111751944 - MamRep38 DNA hAT -100 195 79 1 661 252 250 40 0 chr11 10091914 10091990 -111751866 + ID4 SINE ID 4 82 -1 1 661 346 263 18 12 chr11 10092342 10092450 -111751406 - B1F SINE Alu -1 148 13 1 662 379 324 77 24 chr11 10092629 10092838 -111751018 - B4A SINE B4 -4 288 69 1 662 1066 132 26 5 chr11 10093635 10093825 -111750031 + Lx LINE L1 6395 6588 -66 1 662 338 145 0 0 chr11 10094174 10094243 -111749613 + Lx LINE L1 6586 6654 0 1 662 629 280 21 14 chr11 10094565 10094710 -111749146 + B1_Mus1 SINE Alu 1 146 -2 1 662 384 320 75 35 chr11 10094856 10095057 -111748799 + MER74A LTR ERVL 305 513 -45 1 662 210 175 25 0 chr11 10095069 10095109 -111748747 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 662 527 290 75 11 chr11 10095256 10095444 -111748412 - B3 SINE B2 -15 201 2 1 662 333 299 7 21 chr11 10097825 10097965 -111745891 + Lx6 LINE L1 7296 7433 -27 1 662 2811 36 2 166 chr11 10098091 10098555 -111745301 + RLTR10 LTR ERVK 1 388 -2 1 662 16469 22 4 2 chr11 10098560 10100539 -111743317 + RLTR10-int LTR ERVK 3 1984 -3 1 662 2811 36 2 166 chr11 10100541 10101005 -111742851 + RLTR10 LTR ERVK 1 388 -2 1 662 2980 48 5 3 chr11 10101460 10101832 -111742024 - L1Md_F2 LINE L1 -12 6570 6198 1 662 897 65 0 0 chr11 10101832 10101955 -111741901 + L1Md_F2 LINE L1 6089 6211 -371 1 662 322 341 50 23 chr11 10102768 10103058 -111740798 - L1MB7 LINE L1 -193 5991 5695 1 662 2937 222 62 114 chr11 10103061 10104071 -111739785 - RMER17B LTR ERVK 0 958 1 1 662 691 346 63 0 chr11 10104163 10104466 -111739390 + MLT2C1 LTR ERVL 36 357 -40 1 662 281 222 11 43 chr11 10104758 10104852 -111739004 - L1MB7 LINE L1 -747 5437 5347 1 662 185 0 40 0 chr11 10104960 10104985 -111738871 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 662 1208 328 59 28 chr11 10104985 10105081 -111738775 - Lx3A LINE L1 -46 6954 6846 1 662 1089 79 0 0 chr11 10105081 10105221 -111738635 - B1_Mus1 SINE Alu -5 143 4 1 662 4935 151 47 12 chr11 10105221 10106211 -111737645 - Lx3A LINE L1 -155 6845 5834 1 662 22427 117 42 21 chr11 10106207 10111031 -111732825 - L1_Mur1 LINE L1 -910 4976 48 1 662 36419 68 4 3 chr11 10111141 10117227 -111726629 - L1Md_F3 LINE L1 -13 6569 481 1 662 441 228 113 6 chr11 10117780 10117939 -111725917 + L1MA4 LINE L1 5801 5976 -324 1 662 21 71 0 0 chr11 10118190 10118232 -111725624 + AT_rich Low_complexity Low_complexity 1 42 0 1 662 225 322 55 44 chr11 10118524 10118615 -111725241 + Tigger5 DNA MER2_type 1 92 -2314 1 662 3211 126 31 2 chr11 10118639 10119125 -111724731 - L1VL4 LINE L1 -5610 692 193 1 662 186 71 0 0 chr11 10119261 10119289 -111724567 + (T)n Simple_repeat Simple_repeat 1 28 0 1 662 477 0 0 0 chr11 10120328 10120381 -111723475 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 662 1442 122 130 4 chr11 10122154 10122408 -111721448 - RLTR9A2 LTR ERVK -97 286 1 1 662 437 267 99 7 chr11 10122408 10122656 -111721200 - L1MCa LINE L1 -3928 2094 1606 1 662 820 278 32 0 chr11 10122661 10122832 -111721024 + ORR1D2 LTR MaLR 1 177 -193 1 662 542 92 13 0 chr11 10122832 10122908 -111720948 - ORR1A4 LTR MaLR 0 329 253 1 662 634 268 25 35 chr11 10122906 10123065 -111720791 + ORR1D2 LTR MaLR 176 339 -31 1 662 2675 58 9 0 chr11 10123065 10123408 -111720448 - ORR1A1 LTR MaLR 0 346 1 1 662 634 268 25 35 chr11 10123408 10123445 -111720411 + ORR1D2 LTR MaLR 340 370 0 1 662 16940 52 0 1 chr11 10123491 10126331 -111717525 - L1Md_F2 LINE L1 0 6582 3747 1 662 336 294 21 21 chr11 10126351 10126445 -111717411 + RSINE1 SINE B4 8 101 -64 1 662 474 119 0 0 chr11 10126456 10126540 -111717316 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 662 259 149 25 63 chr11 10126541 10126620 -111717236 + (TAAA)n Simple_repeat Simple_repeat 2 77 0 1 662 1026 308 112 14 chr11 10126683 10127048 -111716808 + MTD LTR MaLR 5 405 -14 1 662 213 0 53 26 chr11 10128372 10128410 -111715446 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 662 47 44 0 0 chr11 10129368 10129436 -111714420 + AT_rich Low_complexity Low_complexity 1 68 0 1 662 955 288 60 30 chr11 10129603 10129968 -111713888 - RCHARR1 DNA MER1_type -480 494 119 1 662 1334 273 48 17 chr11 10129995 10130408 -111713448 + Lx9 LINE L1 7010 7435 -209 1 662 670 105 18 0 chr11 10130411 10130525 -111713331 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 662 349 184 45 9 chr11 10130525 10130635 -111713221 + Lx9 LINE L1 7515 7628 -16 1 662 656 326 73 29 chr11 10130674 10130920 -111712936 + B4A SINE B4 10 266 -26 1 662 347 167 14 14 chr11 10131025 10131098 -111712758 - RMER19B LTR ERVK 0 902 830 1 662 385 254 49 7 chr11 10131130 10131273 -111712583 - Lx9 LINE L1 -140 7504 7356 1 662 1849 189 25 118 chr11 10131320 10131769 -111712087 - RMER19B LTR ERVK -493 409 3 1 662 959 182 13 82 chr11 10131848 10132081 -111711775 - RMER1B Other Other -9 1057 841 1 662 730 311 117 52 chr11 10132165 10132551 -111711305 - RMER1A Other Other -575 455 45 1 662 573 287 48 99 chr11 10132627 10132999 -111710857 - L1M2 LINE L1 -526 5774 5422 1 662 28 29 0 0 chr11 10133050 10133085 -111710771 + AT_rich Low_complexity Low_complexity 1 35 0 1 662 192 97 0 0 chr11 10133215 10133246 -111710610 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 662 382 346 12 49 chr11 10133246 10133410 -111710446 - B3 SINE B2 -51 165 8 1 662 1061 308 107 43 chr11 10133437 10133539 -111710317 - L1M2 LINE L1 -872 5271 5170 1 662 4002 58 0 13 chr11 10133539 10134060 -111709796 - L1Md_F2 LINE L1 -12 6570 6057 1 662 1061 308 107 43 chr11 10134060 10135036 -111708820 - L1M2 LINE L1 -974 5169 4102 1 662 1966 94 0 0 chr11 10135036 10135303 -111708553 + L1_Mus2 LINE L1 6300 6566 0 1 662 1061 308 107 43 chr11 10135303 10135444 -111708412 - L1M2 LINE L1 -2042 4101 3956 1 662 2349 63 119 11 chr11 10135444 10135796 -111708060 - RLTR10 LTR ERVK 0 390 1 1 662 1061 308 107 43 chr11 10135796 10136010 -111707846 - L1M2 LINE L1 -2188 3955 3745 1 662 342 218 257 0 chr11 10136395 10136496 -111707360 + B1F SINE Alu 23 149 0 1 662 26 30 0 0 chr11 10136577 10136610 -111707246 + AT_rich Low_complexity Low_complexity 1 33 0 1 662 1155 88 0 0 chr11 10137318 10137465 -111706391 + B1_Mus2 SINE Alu 1 147 0 1 662 260 123 0 50 chr11 10137467 10137527 -111706329 + A-rich Low_complexity Low_complexity 1 57 0 1 662 277 303 67 11 chr11 10140465 10140555 -111703301 - HERV16-int LTR ERVL -3072 1924 1830 1 662 386 437 58 33 chr11 10141800 10142228 -111701628 - LTR16D LTR ERVL -42 609 171 1 662 358 314 71 47 chr11 10142324 10142535 -111701321 - MER45B DNA Tip100 -31 1009 794 1 662 351 141 0 0 chr11 10142901 10142965 -111700891 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 662 395 281 149 21 chr11 10143529 10143917 -111699939 - L1ME1 LINE L1 -65 6097 5673 1 662 418 271 56 77 chr11 10144294 10144490 -111699366 - B3A SINE B2 -5 193 2 1 662 4178 159 37 16 chr11 10144752 10146223 -111697633 + L1_Mus2 LINE L1 395 1896 -3987 1 662 8334 110 13 12 chr11 10146221 10148158 -111695698 + L1_Mus2 LINE L1 4584 6518 -48 1 662 351 0 0 0 chr11 10148665 10148704 -111695152 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 1 662 1186 246 87 38 chr11 10148795 10149141 -111694715 - MTD LTR MaLR 0 419 57 1 662 240 323 62 0 chr11 10149425 10149490 -111694366 + ID4 SINE ID 1 69 -14 1 662 239 351 65 0 chr11 10149490 10149502 -111694354 + ID SINE ID 1 82 -142 1 662 542 41 14 0 chr11 10149505 10149578 -111694278 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 662 221 146 109 0 chr11 10149582 10149637 -111694219 + T-rich Low_complexity Low_complexity 1 61 0 1 662 279 0 0 0 chr11 10149698 10149729 -111694127 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 662 348 275 0 0 chr11 10149730 10149810 -111694046 - ID_B1 SINE B4 -9 215 136 1 662 22 0 0 0 chr11 10150418 10150440 -111693416 + AT_rich Low_complexity Low_complexity 1 22 0 1 662 36493 24 12 8 chr11 10150756 10155913 -111687943 + L1Md_A LINE L1 416 5586 -297 1 662 8415 34 0 0 chr11 10155913 10156908 -111686948 + L1Md_A LINE L1 5587 6581 -1 1 662 654 104 0 0 chr11 10156974 10157070 -111686786 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 662 324 0 0 0 chr11 10157796 10157832 -111686024 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 1 662 306 283 77 65 chr11 10158515 10158685 -111685171 - MER57C2 LTR ERV1 -211 223 52 1 662 241 240 139 10 chr11 10158887 10158988 -111684868 - Lx5 LINE L1 -1180 5870 5757 1 662 1187 54 7 0 chr11 10159399 10159546 -111684310 + B1_Mus1 SINE Alu 1 148 0 1 662 257 0 30 0 chr11 10159551 10159584 -111684272 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 662 333 123 0 0 chr11 10159820 10159885 -111683971 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 662 431 362 51 20 chr11 10159908 10160415 -111683441 - L1M2 LINE L1 -816 5327 4805 1 662 250 81 0 0 chr11 10160655 10160692 -111683164 - L1M1 LINE L1 -465 5835 5799 1 662 257 266 84 11 chr11 10160829 10160952 -111682904 - L1M2 LINE L1 -580 5711 5569 1 662 297 0 0 0 chr11 10161203 10161236 -111682620 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 662 6223 141 123 13 chr11 10161272 10162914 -111680942 - Lx LINE L1 0 6654 4774 1 662 1884 124 42 3 chr11 10162914 10163221 -111680635 - L1_Mus3 LINE L1 -7 6631 6313 1 662 3843 181 199 16 chr11 10163221 10163359 -111680497 - Lx LINE L1 -1113 4773 4640 1 662 212 167 29 29 chr11 10163360 10163418 -111680438 + T-rich Low_complexity Low_complexity 14 71 0 1 662 918 117 13 33 chr11 10163418 10163569 -111680287 - B1_Mus1 SINE Alu 0 148 1 1 662 32 0 0 0 chr11 10163649 10163681 -111680175 + AT_rich Low_complexity Low_complexity 1 32 0 1 662 27601 66 3 0 chr11 10163685 10169756 -111674100 - L1Md_F2 LINE L1 -11 6571 487 1 662 387 273 59 41 chr11 10169812 10169855 -111674001 - L1M2 LINE L1 -1074 5069 5021 1 662 320 23 45 0 chr11 10169855 10169899 -111673957 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 662 387 273 59 41 chr11 10169899 10170126 -111673730 - L1M2 LINE L1 -1123 5020 4795 1 662 642 307 121 23 chr11 10170154 10170767 -111673089 - L1M2 LINE L1 -1397 4746 4074 1 662 443 254 65 24 chr11 10170782 10171072 -111672784 - L1M2 LINE L1 -2859 3284 2983 1 662 420 276 82 82 chr11 10171414 10171793 -111672063 + L1M2 LINE L1 3668 4046 -2097 1 662 239 104 0 20 chr11 10171809 10171858 -111671998 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 662 489 257 0 0 chr11 10171997 10172102 -111671754 + RMER1B Other Other 600 704 -362 1 662 381 43 0 0 chr11 10172175 10172222 -111671634 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 662 305 265 0 0 chr11 10172375 10172443 -111671413 + Lx9 LINE L1 6715 6782 -862 2 662 786 281 175 3 chr11 10172481 10172784 -111671072 - ORR1D1 LTR MaLR -17 357 3 2 662 1760 273 32 67 chr11 10172789 10173477 -111670379 + Lx9 LINE L1 6802 7465 -179 2 662 267 31 0 0 chr11 10173477 10173509 -111670347 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 662 420 118 0 0 chr11 10173523 10173591 -111670265 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 662 563 316 39 0 chr11 10173661 10173892 -111669964 + L1M2 LINE L1 5504 5743 -557 1 662 22 0 0 0 chr11 10174104 10174126 -111669730 + AT_rich Low_complexity Low_complexity 1 22 0 2 662 216 67 0 0 chr11 10175054 10175084 -111668772 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2 662 298 20 60 20 chr11 10175627 10175677 -111668179 + (CAAAAA)n Simple_repeat Simple_repeat 4 55 0 2 662 330 310 86 29 chr11 10176391 10176600 -111667256 - L1M5 LINE L1 -698 5475 5255 2 662 363 265 506 16 chr11 10176927 10177171 -111666685 - MTD LTR MaLR -55 364 2 2 662 7337 114 6 3 chr11 10177479 10178729 -111665127 - L1_Mus3 LINE L1 -2 6636 5381 2 662 6773 133 1 0 chr11 10178730 10179766 -111664090 + L1_Mm LINE L1 4647 5683 -200 2 662 409 317 16 8 chr11 10179793 10179917 -111663939 - B1F SINE Alu 0 149 25 2 662 387 0 0 0 chr11 10179994 10180037 -111663819 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 662 542 109 0 11 chr11 10180037 10180130 -111663726 + (GA)n Simple_repeat Simple_repeat 1 92 0 2 662 426 65 0 0 chr11 10180997 10181059 -111662797 + (TTTTG)n Simple_repeat Simple_repeat 1 62 0 2 662 389 302 128 32 chr11 10181462 10181622 -111662234 + MT2A LTR ERVL 1 178 -355 2 662 742 283 60 32 chr11 10181622 10181870 -111661986 + MTE2b LTR MaLR 1 255 -124 2 662 737 224 66 12 chr11 10181951 10182118 -111661738 + MTE2b LTR MaLR 204 379 0 2 662 204 64 64 0 chr11 10182368 10182415 -111661441 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 2 662 1076 89 0 0 chr11 10182420 10182566 -111661290 - B1_Mus1 SINE Alu 0 148 3 2 662 255 61 0 0 chr11 10182566 10182599 -111661257 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 662 396 0 0 0 chr11 10186256 10186300 -111657556 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 662 25 51 0 0 chr11 10186445 10186484 -111657372 + AT_rich Low_complexity Low_complexity 1 39 0 2 662 790 316 103 22 chr11 10187164 10187523 -111656333 - MTD LTR MaLR -14 405 18 2 662 275 65 22 0 chr11 10188048 10188094 -111655762 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2 662 233 300 21 43 chr11 10189508 10189602 -111654254 + MER57C2 LTR ERV1 219 310 -124 2 662 651 271 14 72 chr11 10191093 10191300 -111652556 - B3A SINE B2 -2 196 2 2 662 476 327 92 54 chr11 10191686 10191925 -111651931 - ORR1E LTR MaLR -12 347 100 2 662 1380 261 84 3 chr11 10192591 10192972 -111650884 - Lx9 LINE L1 -156 7488 7077 2 662 609 100 0 0 chr11 10192972 10193062 -111650794 + (TC)n Simple_repeat Simple_repeat 2 91 0 2 662 1138 192 65 3 chr11 10193701 10193994 -111649862 + Lx9 LINE L1 7333 7643 -1 2 662 386 53 18 0 chr11 10195182 10195239 -111648617 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 662 513 0 0 0 chr11 10195239 10195295 -111648561 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 662 252 230 55 44 chr11 10195971 10196062 -111647794 + MT2A LTR ERVL 4 95 -438 2 662 995 291 113 47 chr11 10195987 10196351 -111647505 + MTD LTR MaLR 18 405 -14 2 662 263 312 21 142 chr11 10196721 10196960 -111646896 + RMER2 LTR ERV1 330 539 -28 2 662 249 33 0 0 chr11 10198319 10198349 -111645507 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 662 244 246 16 66 chr11 10198435 10198496 -111645360 - tRNA-Ala-GCY_ tRNA tRNA -14 61 4 2 662 3303 76 44 8 chr11 10199017 10199495 -111644361 - RLTR44C LTR ERVK -7 495 1 2 662 9280 53 8 0 chr11 10199495 10200643 -111643213 - RLTR44-int LTR ERVK 0 2812 1656 2 662 4021 88 56 7 chr11 10200642 10201211 -111642645 - RLTR44-int LTR ERVK -1400 1412 816 2 662 425 149 14 0 chr11 10201231 10201305 -111642551 - RLTR44-int LTR ERVK -2666 146 72 2 662 1479 154 11 34 chr11 10201306 10201575 -111642281 - RLTR44-int LTR ERVK -2549 263 1 2 662 3150 69 57 9 chr11 10201586 10202041 -111641815 - RLTR44C LTR ERVK -25 477 1 2 662 1963 237 7 14 chr11 10202330 10202753 -111641103 - MTC LTR MaLR -1 420 1 2 662 270 246 0 0 chr11 10202935 10202996 -111640860 - PB1D10 SINE Alu -36 81 21 2 662 307 356 119 50 chr11 10203042 10203379 -111640477 + LTR52 LTR ERVL 9 368 -53 2 662 948 237 121 53 chr11 10203523 10203821 -111640035 + ORR1C2 LTR MaLR 3 325 -59 2 662 210 71 0 0 chr11 10203821 10203849 -111640007 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2 662 948 237 121 53 chr11 10203849 10203906 -111639950 + ORR1C2 LTR MaLR 326 382 -2 2 662 252 0 0 0 chr11 10205133 10205161 -111638695 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 662 787 290 18 53 chr11 10205464 10205838 -111638018 - MTD LTR MaLR 0 419 2 2 662 2221 202 54 23 chr11 10206659 10207139 -111636717 - RLTR11A2 LTR ERVK -32 495 1 2 662 234 0 0 0 chr11 10207387 10207413 -111636443 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 662 2573 122 10 2 chr11 10207501 10207903 -111635953 + L1_Mus4 LINE L1 6232 6636 0 2 662 23 33 0 0 chr11 10208737 10208767 -111635089 + AT_rich Low_complexity Low_complexity 1 30 0 2 662 2170 142 22 27 chr11 10210000 10210411 -111633445 + RLTR9E LTR ERVK 1 409 0 2 662 260 382 41 7 chr11 10210465 10210610 -111633246 + Tigger5 DNA MER2_type 95 244 -2162 2 662 327 219 15 15 chr11 10210656 10210721 -111633135 + Tigger5 DNA MER2_type 2342 2406 0 2 662 516 267 72 31 chr11 10210750 10211071 -111632785 + L1MD LINE L1 4367 4700 -1446 2 662 308 318 175 39 chr11 10211755 10212040 -111631816 - L1MC4 LINE L1 -111 7931 7608 2 662 306 305 38 30 chr11 10212319 10212451 -111631405 - L1MC4 LINE L1 -765 7277 7145 2 662 1768 312 155 22 chr11 10212614 10213735 -111630121 - Lx8 LINE L1 -6 7467 6198 2 662 555 307 35 0 chr11 10214162 10214364 -111629492 - L1MA4A LINE L1 -385 5918 5710 2 662 459 0 0 0 chr11 10214632 10214683 -111629173 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 662 405 0 0 0 chr11 10214683 10214727 -111629129 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 662 207 188 0 0 chr11 10215306 10215354 -111628502 + (TCTCTG)n Simple_repeat Simple_repeat 4 51 0 2 662 648 70 0 0 chr11 10215362 10215448 -111628408 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 662 219 339 47 62 chr11 10216818 10216947 -111626909 + MIR SINE MIR 38 164 -98 2 662 34 0 0 0 chr11 10217174 10217208 -111626648 + AT_rich Low_complexity Low_complexity 1 34 0 2 662 1002 160 19 39 chr11 10217729 10218015 -111625841 + ORR1A4 LTR MaLR 1 242 -152 2 662 292 351 53 0 chr11 10218238 10218332 -111625524 - MER77 LTR ERVL -448 159 61 2 662 22 35 0 0 chr11 10218756 10218785 -111625071 + AT_rich Low_complexity Low_complexity 1 29 0 2 662 487 285 27 38 chr11 10219676 10219862 -111623994 + Lx6 LINE L1 7222 7405 -55 2 662 400 269 9 18 chr11 10220279 10220389 -111623467 + RSINE1 SINE B4 11 119 -46 2 662 24 0 0 0 chr11 10222970 10222994 -111620862 + AT_rich Low_complexity Low_complexity 1 24 0 2 662 606 249 96 0 chr11 10222997 10223174 -111620682 - B3A SINE B2 0 198 5 2 663 726 258 5 33 chr11 10223644 10223828 -111620028 + MTEb LTR MaLR 186 364 -15 2 663 261 336 40 31 chr11 10223992 10224136 -111619720 + B3A SINE B2 5 146 -52 2 663 429 54 0 0 chr11 10224149 10224205 -111619651 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 663 432 0 0 0 chr11 10225237 10225285 -111618571 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 663 8112 160 35 8 chr11 10227474 10228869 -111614987 + Lx2 LINE L1 4871 6288 -709 2 663 3499 42 28 0 chr11 10228869 10229293 -111614563 - RLTR10C LTR ERVK 0 436 1 2 663 8112 147 44 15 chr11 10229293 10229985 -111613871 + Lx2 LINE L1 6289 6996 -1 2 663 2123 113 102 8 chr11 10230327 10230701 -111613155 + RLTR9E LTR ERVK 1 409 0 2 663 455 267 191 44 chr11 10230787 10230991 -111612865 + RLTR20B3 LTR ERVK 15 248 -329 2 663 1137 85 11 6 chr11 10230991 10231168 -111612688 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 2 663 930 283 57 11 chr11 10231190 10231544 -111612312 + RLTR20B3 LTR ERVK 194 563 -14 2 663 22 0 0 0 chr11 10231700 10231722 -111612134 + AT_rich Low_complexity Low_complexity 1 22 0 2 663 21 0 0 0 chr11 10231766 10231787 -111612069 + AT_rich Low_complexity Low_complexity 1 21 0 2 663 4226 149 30 6 chr11 10231789 10232486 -111611370 - Lx4A LINE L1 -33 7025 6312 2 663 673 206 2 1 chr11 10232615 10232753 -111611103 - L1_Rod LINE L1 -613 5270 5095 2 663 4589 246 76 17 chr11 10232749 10234136 -111609720 + Lx9 LINE L1 6177 7644 0 2 663 207 191 0 0 chr11 10234180 10234222 -111609634 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 663 207 352 0 42 chr11 10234292 10234387 -111609469 - MIR SINE MIR -53 209 119 2 663 232 56 0 123 chr11 10235481 10235562 -111608294 + T-rich Low_complexity Low_complexity 2 72 0 2 663 418 290 94 31 chr11 10236111 10236239 -111607617 - Tigger12c DNA MER2_type -597 137 2 2 663 21 0 0 0 chr11 10237284 10237305 -111606551 + AT_rich Low_complexity Low_complexity 1 21 0 2 663 975 301 93 47 chr11 10237305 10237800 -111606056 - RMER5 LTR ERV1 -16 518 1 2 663 362 177 25 0 chr11 10238085 10238164 -111605692 + GA-rich Low_complexity Low_complexity 5 85 0 2 663 240 111 0 0 chr11 10238420 10238456 -111605400 + (T)n Simple_repeat Simple_repeat 1 36 0 2 663 185 0 40 0 chr11 10240193 10240218 -111603638 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 663 3242 70 36 7 chr11 10240218 10240667 -111603189 + L1Md_F2 LINE L1 6121 6582 0 2 663 657 0 0 0 chr11 10240760 10240833 -111603023 + (GAAA)n Simple_repeat Simple_repeat 4 76 0 2 663 518 54 14 0 chr11 10241028 10241102 -111602754 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2 663 310 143 111 28 chr11 10241148 10241220 -111602636 + Lx7 LINE L1 7615 7692 -4 2 663 357 321 96 6 chr11 10242481 10242647 -111601209 + LTR87 LTR ERVL? 444 624 0 2 663 4965 147 48 113 chr11 10244824 10245849 -111598007 + RMER17B LTR ERVK 1 958 0 3 663 272 188 0 15 chr11 10246105 10246170 -111597686 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 3 663 26 50 0 0 chr11 10246615 10246655 -111597201 + AT_rich Low_complexity Low_complexity 1 40 0 3 663 393 302 30 48 chr11 10247333 10247500 -111596356 - RNLTR23 LTR ERVK 0 642 479 3 663 808 323 18 58 chr11 10248455 10248853 -111595003 + Lx9 LINE L1 7076 7457 -187 3 663 663 78 0 0 chr11 10248859 10248949 -111594907 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 663 315 320 70 20 chr11 10249145 10249346 -111594510 - L1M4 LINE L1 -3476 2670 2460 3 663 485 347 122 16 chr11 10250240 10250486 -111593370 - B4 SINE B4 -3 289 18 3 663 331 271 81 30 chr11 10250579 10250678 -111593178 - RLTR18B LTR ERVK -10 502 399 3 663 3360 174 45 28 chr11 10250683 10251218 -111592638 + L1VL4 LINE L1 618 1158 -5499 3 663 366 23 0 0 chr11 10251218 10251261 -111592595 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 663 16471 150 63 16 chr11 10251261 10251986 -111591870 + L1VL4 LINE L1 1159 2016 -3867 3 663 2646 136 37 37 chr11 10251986 10252468 -111591388 - RLTR45 LTR ERVK 0 482 1 3 663 16471 148 64 15 chr11 10252468 10253267 -111590589 + L1VL4 LINE L1 2017 2810 -3073 3 663 1435 164 177 13 chr11 10253267 10253583 -111590273 + RLTR9A LTR ERVK 1 368 0 3 663 16471 148 64 15 chr11 10253583 10253650 -111590206 + L1VL4 LINE L1 2811 2894 -2989 3 663 629 25 0 12 chr11 10253650 10253730 -111590126 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 3 663 16471 148 64 15 chr11 10253730 10254143 -111589713 + L1VL4 LINE L1 2895 3300 -2583 3 663 180 0 0 0 chr11 10254143 10254163 -111589693 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 663 16471 148 64 15 chr11 10254163 10255362 -111588494 + L1VL4 LINE L1 3301 4526 -1357 3 663 2209 119 87 0 chr11 10255361 10255696 -111588160 + L1VL4 LINE L1 5474 5837 -46 3 663 1695 125 74 92 chr11 10255676 10256056 -111587800 + L1_Mus3 LINE L1 6261 6633 -5 3 663 1016 306 31 109 chr11 10256061 10256600 -111587256 - RLTR18 LTR ERVK -105 511 15 3 663 495 0 0 0 chr11 10256653 10256708 -111587148 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 663 237 98 0 0 chr11 10256708 10256748 -111587108 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 663 445 311 100 70 chr11 10256769 10257039 -111586817 - B4 SINE B4 -10 282 5 3 663 225 121 0 0 chr11 10257042 10257075 -111586781 + RLTR23 LTR ERV1 1 33 -397 3 663 295 341 33 0 chr11 10257080 10257171 -111586685 + MLT1H LTR MaLR 106 199 -350 3 663 22653 83 46 12 chr11 10257364 10260783 -111583073 - L1Md_F2 LINE L1 -10 6572 2791 3 663 654 174 25 8 chr11 10260783 10260905 -111582951 + RLTR23 LTR ERV1 18 141 -289 3 663 22653 83 46 12 chr11 10260905 10262314 -111581542 - L1Md_F2 LINE L1 -10 2790 1230 3 663 20992 81 4 2 chr11 10262321 10265192 -111578664 + L1Md_F2 LINE L1 2710 5585 -298 3 663 7511 74 1 4 chr11 10265194 10266180 -111577676 + L1Md_F2 LINE L1 5588 6570 -12 3 663 1582 163 11 113 chr11 10266180 10266533 -111577323 + RLTR23 LTR ERV1 112 428 -2 3 663 202 261 8 48 chr11 10266604 10266729 -111577127 + T-rich Low_complexity Low_complexity 3 122 0 3 663 33 43 0 0 chr11 10267021 10267068 -111576788 + AT_rich Low_complexity Low_complexity 1 47 0 3 663 1084 172 4 97 chr11 10267070 10267328 -111576528 - Lx3B LINE L1 -3 6970 6737 3 663 377 186 0 0 chr11 10267326 10267385 -111576471 + Lx3B LINE L1 6401 6459 -514 3 663 198 103 0 0 chr11 10267644 10267673 -111576183 + (T)n Simple_repeat Simple_repeat 1 29 0 3 663 997 254 25 25 chr11 10268599 10268918 -111574938 - Lx9 LINE L1 -1 7643 7325 3 663 197 355 49 26 chr11 10270696 10270809 -111573047 - MIR3 SINE MIR -88 180 62 3 663 360 275 124 44 chr11 10272433 10272570 -111571286 + ORR1E LTR MaLR 1 148 -211 3 663 2458 281 66 70 chr11 10272704 10273726 -111570130 - Charlie12 DNA MER1_type -4 2869 1852 3 663 26 0 0 0 chr11 10273785 10273811 -111570045 + AT_rich Low_complexity Low_complexity 1 26 0 3 663 204 133 43 22 chr11 10274143 10274189 -111569667 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 663 2846 72 28 8 chr11 10274243 10274633 -111569223 + MTB LTR MaLR 3 400 0 3 663 7131 104 18 1 chr11 10275186 10276678 -111567178 - L1_Mus3 LINE L1 0 6638 5154 3 663 525 32 0 0 chr11 10276678 10276741 -111567115 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 3 663 18404 133 18 14 chr11 10277123 10277980 -111565876 - L1_Mus3 LINE L1 -719 5164 4332 3 663 1684 51 5 0 chr11 10277980 10278194 -111565662 - L1Md_F2 LINE L1 -12 6570 6356 3 663 18404 133 18 14 chr11 10278194 10280463 -111563393 - L1_Mus3 LINE L1 -1552 4331 2024 3 663 1471 94 45 76 chr11 10280463 10280727 -111563129 + L1_Mus2 LINE L1 6311 6566 0 3 663 248 200 244 12 chr11 10280728 10280814 -111563042 - Charlie12 DNA MER1_type -2259 614 509 3 663 329 269 40 48 chr11 10280887 10281012 -111562844 + RMER30 DNA MER1_type 56 179 -23 3 663 279 321 9 62 chr11 10281007 10281120 -111562736 + ORR1E LTR MaLR 273 379 0 3 663 31 0 0 0 chr11 10281941 10281972 -111561884 + AT_rich Low_complexity Low_complexity 1 31 0 3 663 6306 135 5 3 chr11 10282088 10283612 -111560244 + L1Md_F LINE L1 675 2201 -3682 3 663 1626 89 16 20 chr11 10283637 10283890 -111559966 + L1_Mus2 LINE L1 6313 6564 -2 3 663 468 285 49 93 chr11 10283900 10284057 -111559799 + B3A SINE B2 3 157 -41 3 663 582 15 0 0 chr11 10284057 10284124 -111559732 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 663 468 285 49 93 chr11 10284124 10284171 -111559685 + B3A SINE B2 158 198 0 3 663 1018 106 0 0 chr11 10284392 10284534 -111559322 + B1_Mus1 SINE Alu 5 146 -2 3 663 892 310 44 8 chr11 10284719 10285083 -111558773 - MTE2b LTR MaLR 0 379 3 3 663 5144 66 5 0 chr11 10285614 10286268 -111557588 + L1_Mus1 LINE L1 5658 6314 -253 3 663 1709 124 29 45 chr11 10286268 10286580 -111557276 + IAPLTR2b LTR ERVK 1 307 -20 3 663 1970 73 0 0 chr11 10286602 10286861 -111556995 + L1_Mus1 LINE L1 6309 6567 0 3 663 224 386 16 49 chr11 10286996 10287181 -111556675 - L2 LINE L2 -685 2734 2556 3 663 8059 41 4 2 chr11 10287308 10288290 -111555566 - L1Md_F2 LINE L1 -2 6580 5597 3 663 189 0 0 0 chr11 10288601 10288622 -111555234 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 663 420 71 0 0 chr11 10288622 10288677 -111555179 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 663 490 239 31 124 chr11 10288769 10288898 -111554958 - B1_Mur4 SINE Alu 0 120 4 3 663 265 328 78 78 chr11 10288898 10288929 -111554927 - MT2B LTR ERVL -442 159 129 3 663 327 198 115 0 chr11 10289235 10289331 -111554525 - Lx7 LINE L1 -25 7671 7565 3 663 301 291 140 52 chr11 10289358 10289608 -111554248 + L1MEe LINE L1 169 440 -4414 3 663 3520 20 0 0 chr11 10289932 10290328 -111553528 - MTA_Mm LTR MaLR 0 396 1 3 663 9161 34 2 1 chr11 10290328 10291425 -111552431 - MTA_Mm-int LTR MaLR 0 1098 1 3 663 3384 26 15 0 chr11 10291425 10291815 -111552041 - MTA_Mm LTR MaLR 0 396 1 3 663 1242 254 70 25 chr11 10291950 10292306 -111551550 - ORR1D1 LTR MaLR 0 374 3 3 663 522 0 0 0 chr11 10292451 10292509 -111551347 + (CTA)n Simple_repeat Simple_repeat 2 59 0 3 663 1094 103 11 0 chr11 10292680 10292855 -111551001 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 3 663 421 314 82 56 chr11 10292863 10292974 -111550882 - L1MA4 LINE L1 -1598 6098 5990 3 663 1124 63 0 7 chr11 10292974 10293118 -111550738 - B1_Mus1 SINE Alu -5 143 1 3 663 574 295 83 21 chr11 10293118 10293466 -111550390 - L1MA4 LINE L1 -1707 5989 5638 3 663 218 267 33 0 chr11 10293679 10293739 -111550117 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 3 663 588 300 90 34 chr11 10293754 10294020 -111549836 - RMER15 LTR ERVL -49 526 246 3 663 443 74 0 14 chr11 10294492 10294561 -111549295 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 663 312 27 0 0 chr11 10294561 10294597 -111549259 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 663 303 316 114 32 chr11 10294864 10295172 -111548684 - L1M2 LINE L1 -4222 2627 2295 3 663 9131 74 15 2 chr11 10295915 10297846 -111546010 - L1Md_F2 LINE L1 -12 6570 4611 3 663 226 315 18 26 chr11 10297954 10298068 -111545788 - L1_Mur2 LINE L1 -316 5561 5449 3 663 457 318 70 110 chr11 10298207 10298479 -111545377 - B4 SINE B4 -5 287 27 3 663 5696 102 35 56 chr11 10299195 10300121 -111543735 + RMER17A2 LTR ERVK 1 906 0 3 663 1234 196 34 4 chr11 10300127 10300362 -111543494 - ORR1B1 LTR MaLR -8 386 145 3 663 345 122 0 0 chr11 10300364 10300413 -111543443 - RMER17C LTR ERVK -359 51 3 3 663 265 274 179 0 chr11 10300424 10300530 -111543326 - Lx8 LINE L1 -418 7055 6931 3 663 937 301 128 0 chr11 10300540 10300875 -111542981 + Lx8 LINE L1 6392 6769 -704 3 663 424 343 30 0 chr11 10301050 10301184 -111542672 + B1F1 SINE Alu 10 147 -2 3 663 217 328 0 33 chr11 10301212 10301272 -111542584 + ID4_ SINE ID 25 82 -1 3 663 4132 119 242 14 chr11 10302120 10303476 -111540380 - Lx3C LINE L1 -697 6279 4523 3 663 4215 138 18 3 chr11 10303476 10304152 -111539704 + Lx3C LINE L1 6283 6968 -8 3 663 477 361 8 0 chr11 10304210 10304340 -111539516 + B3A SINE B2 44 174 -24 3 663 425 84 14 0 chr11 10304340 10304411 -111539445 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 663 347 331 43 18 chr11 10304459 10304622 -111539234 + L1MD2 LINE L1 4713 4879 -1267 3 663 578 320 70 11 chr11 10305232 10305605 -111538251 + L1MD2 LINE L1 5593 5987 -372 3 663 290 59 3 0 chr11 10306278 10306318 -111537538 - L1Md_F2 LINE L1 -244 6338 6298 3 663 1334 93 92 14 chr11 10306353 10306571 -111537285 + L1Md_F2 LINE L1 6348 6582 0 3 663 1060 83 7 7 chr11 10306991 10307136 -111536720 - B1_Mus1 SINE Alu -2 146 2 3 663 252 77 0 0 chr11 10308459 10308498 -111535358 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 663 20594 178 53 39 chr11 10308500 10314514 -111529342 - Lx5 LINE L1 -16 7034 915 3 663 31386 85 1 3 chr11 10315506 10320734 -111523122 + L1Md_F2 LINE L1 366 5584 -299 3 663 7623 71 5 3 chr11 10320736 10321728 -111522128 + L1Md_F2 LINE L1 5587 6580 -2 3 663 272 276 0 22 chr11 10321758 10321847 -111522009 - L1_Mur3 LINE L1 -484 5396 5310 3 663 6773 29 1 0 chr11 10321847 10322672 -111521184 - L1_Mm LINE L1 -3047 2836 2011 3 663 272 309 20 47 chr11 10322767 10322896 -111520960 + L1MC LINE L1 5472 5597 -597 3 663 1131 305 49 37 chr11 10323029 10323519 -111520337 + Lx8 LINE L1 6132 6627 -846 3 663 288 278 171 27 chr11 10323547 10323658 -111520198 + RLTR20D LTR ERVK 60 186 -382 3 663 1786 137 47 0 chr11 10323805 10324105 -111519751 - Lx LINE L1 0 6654 6341 3 663 2440 111 0 0 chr11 10324115 10324457 -111519399 + Lx LINE L1 5982 6323 -331 3 663 270 218 18 0 chr11 10324856 10324911 -111518945 + Lx8 LINE L1 6623 6678 -795 3 663 299 224 0 0 chr11 10324946 10325004 -111518852 + Lx8 LINE L1 6791 6848 -625 3 663 1036 101 128 35 chr11 10325082 10325306 -111518550 + L1_Mus4 LINE L1 6276 6630 -6 3 663 288 120 0 0 chr11 10325316 10325366 -111518490 + (TATG)n Simple_repeat Simple_repeat 3 52 0 3 663 430 285 76 50 chr11 10326146 10326427 -111517429 + L1M3c LINE L1 1156 1447 -4694 3 663 258 56 0 0 chr11 10326427 10326463 -111517393 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 663 430 285 76 50 chr11 10326463 10326639 -111517217 + L1M3c LINE L1 1448 1625 -4516 3 663 305 239 58 33 chr11 10326664 10326820 -111517036 + L1M2 LINE L1 2556 2712 -4295 3 663 353 283 123 24 chr11 10327535 10327828 -111516028 + L1M2 LINE L1 3350 3671 -3329 3 663 3375 70 5 2 chr11 10328387 10328832 -111515024 + L1_Mus1 LINE L1 6122 6567 0 4 663 20914 124 3 22 chr11 10329396 10335903 -111507953 + L1_Mus1 LINE L1 387 6441 -126 4 663 2302 114 239 26 chr11 10335903 10336355 -111507501 - RLTR6_Mm LTR ERV1 -70 584 37 4 663 235 218 196 56 chr11 10336357 10336464 -111507392 - RLTR6_Mm LTR ERV1 -532 122 1 4 663 63798 19 12 0 chr11 10336464 10344150 -111499706 - RLTR6-int LTR ERV1 0 7778 1 4 663 2425 113 228 27 chr11 10344150 10344624 -111499232 - RLTR6_Mm LTR ERV1 -49 605 37 4 663 235 218 196 56 chr11 10344626 10344733 -111499123 - RLTR6_Mm LTR ERV1 -532 122 1 4 663 821 132 0 0 chr11 10344733 10344862 -111498994 + L1_Mus2 LINE L1 6437 6565 -1 4 663 315 0 0 0 chr11 10345044 10345079 -111498777 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 663 3582 102 6 4 chr11 10345385 10345886 -111497970 + L1_Mus1 LINE L1 6066 6567 0 4 663 582 250 66 9 chr11 10345911 10346171 -111497685 + L1MC2 LINE L1 5793 6063 -270 4 663 21 0 0 0 chr11 10346177 10346198 -111497658 + AT_rich Low_complexity Low_complexity 1 21 0 4 663 961 338 42 64 chr11 10346198 10346924 -111496932 + Lx7 LINE L1 6613 7347 -126 4 663 1065 8 0 0 chr11 10346924 10347046 -111496810 + (GGAGA)n Simple_repeat Simple_repeat 4 125 0 4 663 882 338 42 64 chr11 10347046 10347160 -111496696 + Lx7 LINE L1 7348 7444 -29 4 663 207 0 0 0 chr11 10347538 10347561 -111496295 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 663 7401 58 2 14 chr11 10347574 10348705 -111495151 - L1Md_F2 LINE L1 -1 6581 5462 4 663 36205 18 3 7 chr11 10348746 10354145 -111489711 + L1Md_A LINE L1 215 5586 -297 4 82 8824 15 0 0 chr11 10354146 10355141 -111488715 + L1Md_A LINE L1 5588 6582 0 4 664 417 319 86 55 chr11 10356942 10357632 -111486224 + L1MA5A LINE L1 2526 3236 -2907 4 664 2502 171 174 52 chr11 10357747 10358056 -111485800 + RMER17B LTR ERVK 16 335 -623 4 664 2236 62 10 3 chr11 10358056 10358345 -111485511 - L1_Mus1 LINE L1 -3 6564 6274 4 664 2502 171 174 52 chr11 10358345 10358683 -111485173 + RMER17B LTR ERVK 336 742 -216 4 664 7119 92 13 3 chr11 10358695 10360024 -111483832 - L1_Mus3 LINE L1 0 6638 5301 4 664 421 188 8 4 chr11 10360020 10360135 -111483721 + L1_Mm LINE L1 5195 5307 -573 4 664 1098 330 75 27 chr11 10360162 10360525 -111483331 + L1MA5A LINE L1 3463 3859 -2284 4 664 630 328 27 60 chr11 10360525 10360892 -111482964 + ORR1E LTR MaLR 3 357 -2 4 664 1098 330 75 27 chr11 10360892 10361992 -111481864 + L1MA5A LINE L1 3860 4996 -1147 4 664 657 290 58 29 chr11 10362146 10362323 -111481533 + L1MA5A LINE L1 5462 5656 -641 4 664 453 19 0 0 chr11 10362323 10362377 -111481479 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 664 657 296 55 29 chr11 10362377 10362642 -111481214 + L1MA5A LINE L1 5634 5885 -1588 4 664 222 37 0 0 chr11 10362657 10362684 -111481172 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 664 324 322 75 47 chr11 10363112 10363324 -111480532 - L1MC4a LINE L1 -1427 6455 6238 4 664 435 302 160 7 chr11 10363369 10363676 -111480180 + Charlie10 DNA MER1_type 643 996 -1826 4 664 999 25 0 0 chr11 10363788 10363906 -111479950 + (CTGGGG)n Simple_repeat Simple_repeat 4 121 0 4 664 2603 207 31 44 chr11 10365301 10366044 -111477812 + RLTR25A LTR ERVK 1 783 -245 4 664 27 0 0 0 chr11 10366296 10366323 -111477533 + AT_rich Low_complexity Low_complexity 1 27 0 4 664 722 240 181 38 chr11 10366353 10366591 -111477265 + RLTR25A LTR ERVK 757 1028 0 4 664 279 0 0 0 chr11 10366652 10366683 -111477173 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 664 634 194 5 25 chr11 10366946 10367093 -111476763 - B1_Mus2 SINE Alu -1 148 2 4 664 810 223 46 5 chr11 10367097 10367291 -111476565 - RMER1C Other Other -129 1213 1012 4 664 1476 0 0 0 chr11 10367302 10367466 -111476390 + (TCTCCC)n Simple_repeat Simple_repeat 3 166 0 4 664 614 90 80 0 chr11 10367475 10367575 -111476281 - MTC LTR MaLR -132 289 182 4 664 184 30 0 57 chr11 10368922 10368957 -111474899 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 4 664 25 0 0 0 chr11 10369410 10369435 -111474421 + AT_rich Low_complexity Low_complexity 1 25 0 4 664 1582 187 73 41 chr11 10369445 10369785 -111474071 - ORR1C2 LTR MaLR 0 384 34 4 664 1036 259 119 15 chr11 10369811 10370148 -111473708 + ORR1C2 LTR MaLR 13 384 0 4 664 1320 230 35 19 chr11 10370148 10370467 -111473389 + ORR1C2-int LTR MaLR 1 324 -1046 4 664 598 232 138 18 chr11 10370446 10370613 -111473243 + ORR1C2 LTR MaLR 143 329 -55 4 664 34434 68 2 13 chr11 10370621 10376769 -111467087 - L1Md_F2 LINE L1 0 6582 511 4 664 744 233 196 51 chr11 10376843 10376944 -111466912 + Lx9 LINE L1 7186 7289 -355 4 664 261 0 0 0 chr11 10376944 10376973 -111466883 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 664 744 233 196 51 chr11 10376973 10377142 -111466714 + Lx9 LINE L1 7290 7477 -167 4 664 344 77 19 0 chr11 10377142 10377194 -111466662 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 664 744 233 196 51 chr11 10377194 10377315 -111466541 + Lx9 LINE L1 7478 7633 -11 4 664 971 255 164 81 chr11 10377315 10377689 -111466167 + MT-int LTR MaLR 299 698 -400 4 664 549 0 0 0 chr11 10377689 10377750 -111466106 + (GAGTG)n Simple_repeat Simple_repeat 3 63 0 4 664 971 255 164 81 chr11 10377750 10377866 -111465990 + MT-int LTR MaLR 699 832 -266 4 664 288 53 0 0 chr11 10377866 10377904 -111465952 + (CTCTG)n Simple_repeat Simple_repeat 3 40 0 4 664 971 255 164 81 chr11 10377904 10377932 -111465924 + MT-int LTR MaLR 833 861 -237 4 664 417 95 0 0 chr11 10377949 10378012 -111465844 + (CTTA)n Simple_repeat Simple_repeat 1 63 0 4 664 492 265 47 1 chr11 10378058 10378219 -111465637 - Lx4B LINE L1 -60 6998 6744 4 664 342 0 0 0 chr11 10379075 10379113 -111464743 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 664 21 0 0 0 chr11 10380336 10380357 -111463499 + AT_rich Low_complexity Low_complexity 1 21 0 4 664 225 0 0 0 chr11 10382298 10382323 -111461533 + (TAA)n Simple_repeat Simple_repeat 2 26 0 4 664 678 251 101 15 chr11 10382653 10382851 -111461005 - MTD LTR MaLR -2 417 203 4 664 635 266 0 53 chr11 10382852 10383039 -111460817 - L1_Mur3 LINE L1 -7117 595 419 4 664 360 211 26 0 chr11 10383039 10383115 -111460741 + L1_Mur3 LINE L1 777 854 -6874 4 664 180 0 0 0 chr11 10383139 10383159 -111460697 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 664 453 15 0 43 chr11 10383162 10383231 -111460625 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 664 1006 275 110 23 chr11 10383232 10383586 -111460270 + RMER4B LTR ERVK 67 451 -134 4 664 567 167 39 8 chr11 10383694 10383821 -111460035 + L1_Mur3 LINE L1 885 1015 -6713 4 664 2252 186 78 22 chr11 10383818 10384117 -111459739 + L1_Mur3 LINE L1 1325 1649 -4231 4 664 2266 156 99 47 chr11 10384117 10384650 -111459206 - RLTR31_Mm LTR ERVK 0 561 1 4 664 2252 186 78 22 chr11 10384650 10384988 -111458868 + L1_Mur3 LINE L1 1650 1998 -3882 4 664 8972 180 76 44 chr11 10385011 10385253 -111458603 + L1_Mur3 LINE L1 2759 3004 -2876 4 664 1006 89 12 17 chr11 10385253 10385425 -111458431 + (GGAGA)n Simple_repeat Simple_repeat 2 172 0 4 664 393 22 0 0 chr11 10385429 10385475 -111458381 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 4 664 8972 180 76 44 chr11 10385475 10385834 -111458022 + L1_Mur3 LINE L1 3005 3316 -2564 4 664 3139 47 5 0 chr11 10385834 10386219 -111457637 + L1Md_F3 LINE L1 6198 6584 0 4 664 8972 180 76 44 chr11 10386219 10387922 -111455934 + L1_Mur3 LINE L1 3317 5140 -740 4 664 230 0 33 0 chr11 10387922 10387952 -111455904 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 4 664 8972 180 76 44 chr11 10387952 10388071 -111455785 + L1_Mur3 LINE L1 5141 5262 -618 4 664 19283 138 106 20 chr11 10390528 10393168 -111450688 + L1_Mus3 LINE L1 218 2818 -3065 4 664 3319 41 5 0 chr11 10393168 10393562 -111450294 + MTA_Mm LTR MaLR 1 396 0 4 664 19283 124 149 6 chr11 10393562 10396659 -111447197 + L1_Mus3 LINE L1 2819 6624 -14 4 664 180 0 0 0 chr11 10396659 10396679 -111447177 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 664 21 0 0 0 chr11 10396959 10396980 -111446876 + AT_rich Low_complexity Low_complexity 1 21 0 4 664 259 259 0 0 chr11 10398927 10398981 -111444875 + L1_Rod LINE L1 5388 5441 -406 4 664 300 351 14 51 chr11 10398998 10399136 -111444720 + Lx9 LINE L1 6536 6668 -976 4 664 206 259 0 11 chr11 10399374 10399464 -111444392 + (CACCAT)n Simple_repeat Simple_repeat 1 89 0 4 664 183 100 0 0 chr11 10401395 10401425 -111442431 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 664 699 302 157 18 chr11 10401607 10401944 -111441912 + RCHARR1 DNA MER1_type 39 422 -552 4 664 9403 162 11 12 chr11 10402039 10402965 -111440891 + L1VL4 LINE L1 1 929 -5373 4 664 2921 75 18 3 chr11 10402965 10403353 -111440503 - MTA_Mm LTR MaLR 0 396 3 4 664 9403 108 29 7 chr11 10403353 10404810 -111439046 + L1VL4 LINE L1 930 2422 -1137 4 664 15845 178 77 77 chr11 10404810 10409454 -111434402 - MMETn-int LTR ERVK -200 4644 2 4 664 1508 150 27 66 chr11 10409455 10409790 -111434066 - RLTRETN_Mm LTR ERVK 0 322 1 4 664 13449 171 97 22 chr11 10409790 10411366 -111432490 + L1_Mus4 LINE L1 2815 4627 -1256 4 664 1954 197 28 28 chr11 10411366 10411800 -111432056 + RLTR9B LTR ERVK 1 434 -3 4 664 13449 145 47 17 chr11 10411800 10413814 -111430042 + L1_Mus4 LINE L1 4628 6618 -18 4 664 684 228 45 34 chr11 10413814 10413991 -111429865 + RCHARR1 DNA MER1_type 796 974 0 4 664 767 234 107 1 chr11 10414664 10414870 -111428986 + L1_Mur2 LINE L1 5383 5590 -287 4 664 1628 295 39 22 chr11 10414922 10415415 -111428441 + Lx6 LINE L1 6934 7434 -26 4 664 1405 249 87 55 chr11 10419088 10419492 -111424364 + MTD LTR MaLR 1 417 -2 4 664 1366 206 36 16 chr11 10419673 10419979 -111423877 + RLTR12B LTR ERVK 1 314 -254 4 664 213 94 0 0 chr11 10419985 10420017 -111423839 + (GGGAGA)n Simple_repeat Simple_repeat 5 36 0 4 664 1016 233 93 20 chr11 10420021 10420323 -111423533 + RLTR12B LTR ERVK 201 524 -4 4 664 1099 294 161 23 chr11 10420426 10420941 -111422915 - Lx8 LINE L1 -188 7285 6700 4 664 261 57 0 0 chr11 10421010 10421045 -111422811 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 664 327 404 0 27 chr11 10421060 10421172 -111422684 - PB1 SINE Alu -18 109 1 4 664 259 324 54 54 chr11 10422607 10422754 -111421102 + L1ME2 LINE L1 5897 6043 -121 4 664 202 378 73 7 chr11 10423295 10423431 -111420425 - MIR SINE MIR -101 161 17 4 664 260 253 0 51 chr11 10423563 10423642 -111420214 + G-rich Low_complexity Low_complexity 6 80 0 4 664 641 253 55 54 chr11 10423642 10423889 -111419967 - LTRIS4 LTR ERV1 0 512 271 4 664 738 143 0 0 chr11 10424116 10424249 -111419607 + (GA)n Simple_repeat Simple_repeat 2 134 0 4 664 260 155 14 0 chr11 10424392 10424463 -111419393 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 664 195 42 0 0 chr11 10424463 10424487 -111419369 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 664 252 374 9 9 chr11 10425142 10425258 -111418598 + L2c LINE L2 3103 3218 -169 4 664 221 83 28 0 chr11 10425569 10425605 -111418251 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 4 664 5524 200 39 21 chr11 10426747 10427906 -111415950 + MTC-int LTR MaLR 79 1258 0 4 664 312 224 26 0 chr11 10428217 10428293 -111415563 + MTC LTR MaLR 1 78 -343 4 664 1699 192 91 7 chr11 10428737 10429314 -111414542 + Lx3C LINE L1 880 1502 -4384 4 664 38451 5 0 0 chr11 10429313 10434858 -111408998 + L1Md_A LINE L1 42 5586 -297 4 664 9017 2 0 0 chr11 10434858 10435854 -111408002 + L1Md_A LINE L1 5587 6582 0 4 664 16162 184 62 101 chr11 10435855 10437600 -111406256 + Lx3C LINE L1 1485 3303 -3673 4 664 2501 143 64 11 chr11 10437600 10438062 -111405794 - RLTR31A_Mm LTR ERVK 0 557 1 4 664 16162 184 62 101 chr11 10438062 10441579 -111402277 + Lx3C LINE L1 3304 6972 -4 4 664 526 304 4 63 chr11 10441589 10441828 -111402028 + L1MA4 LINE L1 5773 5997 -303 4 664 279 79 0 0 chr11 10442675 10442713 -111401143 + (GGGAA)n Simple_repeat Simple_repeat 4 41 0 4 664 1475 226 25 19 chr11 10442724 10442844 -111401012 + MTC LTR MaLR 105 232 -189 4 664 2850 78 2 79 chr11 10442844 10443289 -111400567 + RLTR10A LTR ERVK 1 411 0 5 664 1475 226 25 19 chr11 10443289 10443483 -111400373 + MTC LTR MaLR 233 421 0 4 664 466 304 136 17 chr11 10443559 10443970 -111399886 + L1MB8 LINE L1 5511 5970 -208 5 664 1419 262 83 3 chr11 10445453 10445828 -111398028 + MTD LTR MaLR 1 405 -14 5 664 185 94 0 30 chr11 10445920 10445953 -111397903 + (TTCCC)n Simple_repeat Simple_repeat 5 36 0 5 664 304 318 115 33 chr11 10446521 10446703 -111397153 + LTR40a LTR ERVL 14 210 -309 5 664 11314 93 15 93 chr11 10446711 10448671 -111395185 - RLTR22_Mus LTR ERVK 0 1808 1 5 664 3943 95 0 2 chr11 10449147 10449698 -111394158 - L1_Mus4 LINE L1 -4 6632 6083 5 664 206 160 20 0 chr11 10450136 10450186 -111393670 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 5 664 22 70 0 0 chr11 10451702 10451745 -111392111 + AT_rich Low_complexity Low_complexity 1 43 0 5 664 240 186 70 0 chr11 10451932 10451975 -111391881 + B3A SINE B2 8 53 -145 5 664 36 0 0 0 chr11 10452050 10452086 -111391770 + AT_rich Low_complexity Low_complexity 1 36 0 5 664 324 0 0 0 chr11 10453026 10453062 -111390794 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 664 7592 68 7 1 chr11 10454421 10455462 -111388394 - L1_Mus1 LINE L1 0 6654 5531 5 664 1080 38 0 0 chr11 10458083 10458216 -111385640 + (TG)n Simple_repeat Simple_repeat 2 134 0 5 664 286 352 72 24 chr11 10459058 10459224 -111384632 - MLT1C LTR MaLR -278 189 16 5 664 397 304 105 88 chr11 10459240 10459536 -111384320 - MLT1C-int LTR MaLR -1 1734 1434 5 664 195 129 0 0 chr11 10459563 10459594 -111384262 + (A)n Simple_repeat Simple_repeat 1 31 0 5 664 1561 322 81 33 chr11 10459597 10460506 -111383350 - MLT1-int LTR MaLR -279 1092 5 5 664 394 278 80 6 chr11 10461134 10461300 -111382556 + B3 SINE B2 2 192 -24 5 664 422 49 0 16 chr11 10461300 10461362 -111382494 + (TAAAA)n Simple_repeat Simple_repeat 5 65 0 5 664 323 322 111 22 chr11 10461362 10461376 -111382480 + B3A SINE B2 186 198 0 5 664 300 102 0 0 chr11 10461750 10461799 -111382057 + (CATA)n Simple_repeat Simple_repeat 1 49 0 5 664 28 0 0 0 chr11 10462038 10462066 -111381790 + AT_rich Low_complexity Low_complexity 1 28 0 5 664 629 193 7 0 chr11 10462189 10462324 -111381532 + CT-rich Low_complexity Low_complexity 2 137 0 5 664 493 319 152 26 chr11 10462326 10462360 -111381496 - Lx8 LINE L1 -93 7380 7345 5 664 1134 68 7 0 chr11 10462360 10462506 -111381350 - B1_Mus1 SINE Alu 0 148 2 5 664 493 319 152 26 chr11 10462506 10462735 -111381121 - Lx8 LINE L1 -129 7344 7084 5 664 353 308 58 49 chr11 10463063 10463268 -111380588 - L1M4 LINE L1 -6332 210 4 5 664 23 0 0 0 chr11 10463680 10463703 -111380153 + AT_rich Low_complexity Low_complexity 1 23 0 5 664 5411 133 15 3 chr11 10464063 10465224 -111378632 - Lx2 LINE L1 -542 6455 5274 5 664 1254 157 34 0 chr11 10465225 10465429 -111378427 + Lx2 LINE L1 6430 6640 -357 5 664 1275 113 18 23 chr11 10465429 10465647 -111378209 + Lx2 LINE L1 6770 6986 -11 5 664 243 0 0 0 chr11 10465845 10465872 -111377984 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 664 270 0 0 0 chr11 10465872 10465902 -111377954 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 664 228 333 112 14 chr11 10466935 10467078 -111376778 - L1M4 LINE L1 -2007 4139 3983 5 664 238 238 149 19 chr11 10467716 10467823 -111376033 - LTR81B LTR ERV1? -1237 156 36 5 664 369 306 60 101 chr11 10467795 10467944 -111375912 - B3 SINE B2 -69 147 5 5 664 385 329 88 20 chr11 10468086 10468597 -111375259 - L1M3 LINE L1 -839 5301 4756 5 664 306 0 0 0 chr11 10468751 10468785 -111375071 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 664 888 317 54 34 chr11 10469171 10469853 -111374003 + L1M2 LINE L1 3796 4491 -1652 5 664 616 306 207 11 chr11 10470739 10471208 -111372648 + L1M2 LINE L1 4552 5112 -1031 5 664 387 0 0 0 chr11 10471347 10471390 -111372466 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 664 3896 126 65 9 chr11 10471407 10472064 -111371792 + Lx2B LINE L1 6307 7000 0 5 664 338 268 104 67 chr11 10472171 10472199 -111371657 + L1MD LINE L1 4795 4828 -1318 5 664 2819 65 41 15 chr11 10472199 10472593 -111371263 + L1Md_F2 LINE L1 6174 6577 -5 5 664 338 268 104 67 chr11 10472593 10472728 -111371128 + L1MD LINE L1 4829 4964 -1182 5 664 532 302 73 5 chr11 10472741 10472947 -111370909 + ID_B1 SINE B4 2 221 -3 5 664 27 0 0 0 chr11 10473169 10473196 -111370660 + AT_rich Low_complexity Low_complexity 1 27 0 5 664 235 335 100 38 chr11 10473262 10473603 -111370253 + L1MD LINE L1 5550 5911 -448 5 664 25 0 0 0 chr11 10473607 10473632 -111370224 + AT_rich Low_complexity Low_complexity 1 25 0 5 664 654 153 24 12 chr11 10473761 10473926 -111369930 + (TA)n Simple_repeat Simple_repeat 2 168 0 5 664 198 106 20 41 chr11 10473956 10474005 -111369851 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 664 2553 70 41 0 chr11 10474485 10474826 -111369030 + L1_Mus1 LINE L1 6213 6567 0 5 664 916 277 137 0 chr11 10475140 10475454 -111368402 - ORR1D2 LTR MaLR -13 357 1 5 664 185 358 25 84 chr11 10476518 10476637 -111367219 - L2b LINE L2 -43 3332 3221 5 664 250 290 30 30 chr11 10477884 10478019 -111365837 + L1MDa LINE L1 3 137 -6496 5 664 274 249 142 73 chr11 10478207 10478454 -111365402 + Lx9 LINE L1 7254 7517 -127 5 664 330 87 0 0 chr11 10478470 10478516 -111365340 + (TTA)n Simple_repeat Simple_repeat 2 47 0 5 664 264 182 52 0 chr11 10478620 10478697 -111365159 + (TTATA)n Simple_repeat Simple_repeat 2 82 0 5 664 510 31 0 0 chr11 10478705 10478769 -111365087 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 5 664 2741 66 3 0 chr11 10478943 10479293 -111364563 + L1_Mus1 LINE L1 6217 6567 0 5 664 267 325 69 51 chr11 10479299 10479474 -111364382 + L1MDa LINE L1 761 938 -5695 5 664 275 248 100 9 chr11 10479631 10479741 -111364115 + L1MDa LINE L1 1207 1326 -5307 5 664 461 328 169 25 chr11 10479746 10480184 -111363672 + L1MDa LINE L1 1537 2037 -4596 5 664 401 81 0 16 chr11 10480451 10480514 -111363342 + (CATA)n Simple_repeat Simple_repeat 2 63 0 5 664 249 217 0 28 chr11 10480543 10480614 -111363242 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 5 664 933 315 63 27 chr11 10480682 10481093 -111362763 + Lx8 LINE L1 6260 6685 -788 5 664 7273 75 10 4 chr11 10481096 10482067 -111361789 - L1_Mus3 LINE L1 0 6638 5662 5 664 598 314 18 55 chr11 10482084 10482357 -111361499 + Lx8 LINE L1 6802 7064 -409 5 664 243 359 0 0 chr11 10482351 10482429 -111361427 + Lx8 LINE L1 7202 7279 -194 5 664 1261 291 32 33 chr11 10482646 10483311 -111360545 - Lx7 LINE L1 -1643 6053 5394 5 664 913 203 410 24 chr11 10483311 10483581 -111360275 + RLTR21 LTR ERVK 1 374 -1198 5 664 15405 103 42 4 chr11 10483582 10485571 -111358285 + L1VL4 LINE L1 206 2255 -1304 5 664 531 0 0 0 chr11 10485571 10485630 -111358226 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 664 252 0 0 0 chr11 10485630 10485657 -111358199 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 10 15405 97 51 5 chr11 10485657 10486746 -111357110 + L1VL4 LINE L1 2256 3406 -153 5 665 2590 249 30 26 chr11 10486852 10487745 -111356111 - Lx6 LINE L1 -685 6775 5648 5 665 4774 152 33 36 chr11 10487746 10488434 -111355422 + RLTR21 LTR ERVK 361 1049 -523 5 665 3781 127 102 154 chr11 10488434 10489414 -111354442 - RLTR13B3 LTR ERVK 0 929 1 5 665 4774 156 36 43 chr11 10489414 10489711 -111354145 + RLTR21 LTR ERVK 1050 1306 -266 5 665 276 77 0 0 chr11 10489711 10489750 -111354106 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 665 2132 181 58 92 chr11 10489750 10489793 -111354063 + RLTR21 LTR ERVK 1232 1297 -275 5 665 360 0 0 0 chr11 10489793 10489833 -111354023 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 665 2132 181 58 92 chr11 10489833 10490109 -111353747 + RLTR21 LTR ERVK 1298 1570 -2 5 665 310 255 83 28 chr11 10490109 10490218 -111353638 - L1_Mur3 LINE L1 -481 5399 5285 5 665 30 0 0 0 chr11 10490233 10490263 -111353593 + AT_rich Low_complexity Low_complexity 1 30 0 5 665 647 301 45 5 chr11 10490320 10490544 -111353312 + Lx9 LINE L1 6693 6925 -719 5 665 696 247 61 25 chr11 10490541 10490819 -111353037 - L1_Mur3 LINE L1 -589 5291 5004 5 665 4396 160 31 1 chr11 10490898 10491662 -111352194 - Lx2 LINE L1 -1 6996 6210 5 665 404 269 68 6 chr11 10491673 10491834 -111352022 - L1_Mur3 LINE L1 -897 4983 4813 5 665 5808 157 69 11 chr11 10491842 10493811 -111350045 + L1Md_F LINE L1 571 2763 -3114 5 665 12171 101 2 14 chr11 10493817 10496346 -111347510 + L1_Mus2 LINE L1 4067 6564 -2 5 665 374 290 0 0 chr11 10496629 10496736 -111347120 - L1_Mur2 LINE L1 -853 5024 4918 5 665 426 299 95 30 chr11 10496742 10497217 -111346639 - L1MEa LINE L1 -2290 3856 3351 5 665 192 237 82 33 chr11 10497637 10497698 -111346158 - L3b LINE CR1 -227 255 192 5 665 363 276 31 32 chr11 10497710 10497824 -111346032 + MLT1A1 LTR MaLR 245 396 -12 5 665 255 333 51 36 chr11 10497865 10498002 -111345854 + MLT1A1-int LTR MaLR 30 168 -1567 5 665 612 333 126 54 chr11 10498015 10498336 -111345520 - L1MEa LINE L1 -5313 929 578 5 665 563 71 0 12 chr11 10498336 10498422 -111345434 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 665 612 333 130 52 chr11 10498422 10498879 -111344977 - L1MEa LINE L1 -5559 577 86 5 665 4154 159 10 40 chr11 10498895 10499536 -111344320 + L1VL4 LINE L1 203 829 -5473 5 665 210 37 0 0 chr11 10499536 10499563 -111344293 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 665 4154 90 1 6 chr11 10499563 10499755 -111344101 + L1VL4 LINE L1 830 1012 -2547 5 665 1761 102 16 0 chr11 10499754 10500000 -111343856 - Lx3_Mus LINE L1 -1114 5895 5646 5 665 9090 91 18 21 chr11 10500000 10501356 -111342500 - L1_Mur1 LINE L1 -238 5648 4297 1 665 5541 107 71 3 chr11 10501362 10502303 -111341553 + Lx3_Mus LINE L1 5908 6959 -50 2 665 1089 53 5 163 chr11 10502309 10502512 -111341344 + L1Md_F3 LINE L1 6404 6574 -10 3 665 21 82 0 0 chr11 10502825 10502874 -111340982 + AT_rich Low_complexity Low_complexity 1 49 0 4 665 1997 224 52 97 chr11 10503139 10503778 -111340078 + RMER19C LTR ERVK 1 610 -1 5 665 357 306 67 51 chr11 10504152 10504586 -111339270 - L1MC1 LINE L1 -28 6316 5865 6 665 321 322 118 59 chr11 10504576 10504949 -111338907 + L1MB1 LINE L1 5771 6165 -3 7 665 792 224 96 14 chr11 10505091 10505299 -111338557 + URR1B DNA MER1_type 1 225 0 8 665 224 169 45 15 chr11 10505452 10505518 -111338338 + (TA)n Simple_repeat Simple_repeat 1 68 0 9 665 243 125 0 0 chr11 10505522 10505562 -111338294 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 665 256 268 10 49 chr11 10505704 10505806 -111338050 + CT-rich Low_complexity Low_complexity 3 100 0 1 665 390 381 33 23 chr11 10507205 10507420 -111336436 + Helitron3Na_Mam RC Helitron 242 458 -28 1 665 27 29 0 0 chr11 10508133 10508167 -111335689 + AT_rich Low_complexity Low_complexity 1 34 0 1 665 485 388 43 54 chr11 10508198 10508547 -111335309 - MLT2B1 LTR ERVL -64 456 112 1 665 1952 209 37 7 chr11 10508883 10509288 -111334568 + MTC LTR MaLR 5 421 0 1 665 186 43 0 0 chr11 10509949 10509972 -111333884 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1 665 841 196 51 23 chr11 10509972 10510149 -111333707 - B2_Mm2 SINE B2 -11 184 3 1 665 10221 145 12 11 chr11 10510358 10512068 -111331788 + L1_Mm LINE L1 3630 5345 -538 1 665 4325 143 95 26 chr11 10512068 10512912 -111330944 - RLTR13D6 LTR ERVK 0 902 1 1 665 10221 145 12 11 chr11 10512912 10512981 -111330875 + L1_Mm LINE L1 5346 5410 -473 1 665 4576 126 13 25 chr11 10512981 10513801 -111330055 + L1_Mus3 LINE L1 5865 6638 0 2 665 450 0 0 0 chr11 10514614 10514664 -111329192 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 2 665 441 360 35 6 chr11 10514669 10514842 -111329014 + B3A SINE B2 3 180 -18 2 665 267 54 0 0 chr11 10514888 10514925 -111328931 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 665 314 277 80 28 chr11 10515450 10515655 -111328201 - L1MA4 LINE L1 -9 6282 6074 2 665 22 0 0 0 chr11 10515655 10515677 -111328179 + AT_rich Low_complexity Low_complexity 1 22 0 2 665 189 0 0 0 chr11 10515935 10515956 -111327900 + (A)n Simple_repeat Simple_repeat 1 21 0 2 665 384 371 48 5 chr11 10516701 10516907 -111326949 - L2 LINE L2 -605 2814 2600 2 665 22 0 0 0 chr11 10516941 10516963 -111326893 + AT_rich Low_complexity Low_complexity 1 22 0 2 665 262 269 67 8 chr11 10517087 10517207 -111326649 - L1MB4 LINE L1 -3081 3663 3537 2 665 241 416 19 25 chr11 10517209 10517367 -111326489 - L1MB4 LINE L1 -5557 1111 955 2 665 447 19 0 0 chr11 10517846 10517898 -111325958 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 665 455 299 109 42 chr11 10517964 10518156 -111325700 - B3 SINE B2 0 216 12 3 665 737 336 91 29 chr11 10518178 10518892 -111324964 - L1MB4 LINE L1 -5757 850 93 2 665 310 177 150 40 chr11 10519891 10519991 -111323865 - Lx7 LINE L1 -52 7644 7534 3 665 306 210 16 0 chr11 10520389 10520451 -111323405 + L1Md_F LINE L1 662 724 -5795 3 665 18461 139 9 3 chr11 10520513 10524032 -111319824 + L1Md_F LINE L1 675 4447 -1436 3 665 1872 125 37 19 chr11 10524032 10524357 -111319499 + IAPEY_LTR LTR ERVK 55 385 0 3 665 4153 150 35 16 chr11 10524357 10525185 -111318671 + IAPEY3-int LTR ERVK 1 952 -6629 3 665 1708 175 103 45 chr11 10525297 10525778 -111318078 + RMER16-int LTR ERVK 251 819 -4587 3 665 467 230 88 0 chr11 10525783 10525896 -111317960 + RMER16-int LTR ERVK 938 1060 -5077 3 665 279 279 0 55 chr11 10525909 10526000 -111317856 + IAPEy-int LTR ERVK 2454 2539 -4867 3 665 671 193 0 0 chr11 10526012 10526131 -111317725 + IAPEy-int LTR ERVK 2635 2753 -4653 3 665 3380 139 152 0 chr11 10526157 10526769 -111317087 + IAPEy-int LTR ERVK 3567 4271 -3135 3 665 536 170 9 35 chr11 10526773 10526889 -111316967 + MMETn-int LTR ERVK 2356 2468 -2376 3 665 855 73 35 49 chr11 10526911 10527054 -111316802 + IAPEy-int LTR ERVK 4530 4670 -2911 3 665 3343 89 0 16 chr11 10527311 10527758 -111316098 + IAPEy-int LTR ERVK 5203 5642 -1939 3 665 3525 77 0 2 chr11 10527749 10528204 -111315652 + IAPEy-int LTR ERVK 5761 6214 -1367 3 665 5444 99 5 8 chr11 10528194 10528975 -111314881 + IAPEy-int LTR ERVK 6735 7513 0 3 665 1890 114 43 25 chr11 10528975 10529300 -111314556 + IAPEY_LTR LTR ERVK 55 385 0 3 665 8262 115 33 11 chr11 10529300 10531364 -111312492 + L1_Mus2 LINE L1 4442 6566 0 4 665 306 0 0 0 chr11 10532007 10532041 -111311815 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4 665 2915 167 18 78 chr11 10532067 10532111 -111311745 + RLTR12A LTR ERVK 1 44 -524 4 665 3275 42 5 5 chr11 10532111 10532513 -111311343 + L1Md_F2 LINE L1 6168 6569 -13 4 665 2915 167 18 78 chr11 10532513 10532639 -111311217 + RLTR12A LTR ERVK 45 150 -418 4 665 3953 63 0 0 chr11 10532639 10533132 -111310724 - L1_Mus1 LINE L1 -2 6565 6073 4 665 2915 167 18 78 chr11 10533132 10533564 -111310292 + RLTR12A LTR ERVK 151 568 0 4 665 864 275 26 0 chr11 10534429 10534622 -111309234 + B3 SINE B2 14 211 -5 4 665 24 32 0 0 chr11 10535342 10535373 -111308483 + AT_rich Low_complexity Low_complexity 1 31 0 4 665 6563 204 46 33 chr11 10536686 10537697 -111306159 - Lx5 LINE L1 -3 7047 6029 4 665 788 71 47 12 chr11 10537697 10537867 -111305989 + (TA)n Simple_repeat Simple_repeat 2 177 0 4 665 6563 167 13 8 chr11 10537867 10538395 -111305461 - Lx5 LINE L1 -1022 6028 5482 4 665 1120 183 24 16 chr11 10538406 10538656 -111305200 - Lx5 LINE L1 -1650 4227 3976 4 665 2783 221 99 17 chr11 10538747 10539399 -111304457 - RMER13B LTR ERVK 0 908 203 4 665 4326 136 18 45 chr11 10539399 10540092 -111303764 + RMER17D2 LTR ERVK 1 677 -132 5 665 3521 18 0 0 chr11 10540092 10540488 -111303368 - MTA_Mm LTR MaLR 0 396 1 5 665 4326 136 18 45 chr11 10540488 10540625 -111303231 + RMER17D2 LTR ERVK 678 809 0 5 665 943 217 28 9 chr11 10540650 10540864 -111302992 - RMER13B LTR ERVK -686 222 5 4 665 230 313 106 48 chr11 10541058 10541162 -111302694 - RMER15 LTR ERVL -14 561 452 5 665 1058 301 104 24 chr11 10541705 10542341 -111301515 - L1MB8 LINE L1 -173 6005 5319 5 665 237 226 24 12 chr11 10542337 10542422 -111301434 - L1MB8 LINE L1 -2 6176 6091 5 665 530 268 121 25 chr11 10542461 10542783 -111301073 - L1MB3 LINE L1 -17 6166 5814 5 665 683 277 14 71 chr11 10542930 10543140 -111300716 + B3A SINE B2 1 198 0 5 665 24384 14 0 0 chr11 10543231 10546733 -111297123 - L1Md_A LINE L1 0 6582 3080 5 665 391 221 6 80 chr11 10546736 10546888 -111296968 - Lx9 LINE L1 -5 7639 7500 5 665 402 21 0 0 chr11 10546888 10546935 -111296921 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 665 839 191 119 0 chr11 10547014 10547182 -111296674 - ORR1C1 LTR MaLR -8 370 183 6 665 2634 202 22 7 chr11 10547182 10547721 -111296135 - ORR1C1-int LTR MaLR -888 621 75 6 665 1179 255 78 40 chr11 10547724 10548149 -111295707 - Lx9 LINE L1 -175 7469 7029 5 665 2302 263 68 8 chr11 10548209 10548841 -111295015 + Lx9 LINE L1 6355 7024 -620 6 665 220 173 77 0 chr11 10548967 10549019 -111294837 - B1F SINE Alu -1 148 93 6 665 205 234 0 21 chr11 10549130 10549178 -111294678 + GA-rich Low_complexity Low_complexity 2 48 0 6 665 225 328 0 43 chr11 10549204 10549274 -111294582 - PB1D10 SINE Alu -40 77 11 6 665 374 270 80 32 chr11 10549401 10549650 -111294206 - L1M3 LINE L1 -2450 3696 3436 6 665 204 40 0 0 chr11 10549705 10549730 -111294126 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 6 665 902 227 106 5 chr11 10549733 10549941 -111293915 - Lx5 LINE L1 -19 7031 6803 6 665 270 0 0 0 chr11 10550083 10550113 -111293743 + (T)n Simple_repeat Simple_repeat 1 30 0 6 665 1155 75 0 0 chr11 10550130 10550277 -111293579 + B1_Mus2 SINE Alu 1 147 0 6 665 231 36 0 0 chr11 10550277 10550305 -111293551 + (A)n Simple_repeat Simple_repeat 1 28 0 7 665 225 0 0 0 chr11 10550415 10550440 -111293416 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 7 665 626 283 134 41 chr11 10550492 10551222 -111292634 - L1M3 LINE L1 -3113 3027 2230 6 665 267 324 40 47 chr11 10551348 10551497 -111292359 + Lx7 LINE L1 5595 5742 -1954 7 665 305 267 31 108 chr11 10552408 10552538 -111291318 + PB1D7 SINE Alu 1 120 0 7 665 7688 196 14 4 chr11 10553640 10556134 -111287722 + Lx3C LINE L1 4454 6975 -1 7 665 1211 234 66 22 chr11 10556169 10556769 -111287087 - L1_Mur3 LINE L1 -4450 1427 807 7 665 25 51 0 0 chr11 10558017 10558056 -111285800 + AT_rich Low_complexity Low_complexity 1 39 0 7 665 257 133 22 0 chr11 10558283 10558328 -111285528 + ORR1B2 LTR MaLR 144 189 -178 7 665 2705 191 8 16 chr11 10558685 10559181 -111284675 - RLTR25B LTR ERVK -536 492 1 7 665 235 143 71 0 chr11 10559181 10559222 -111284634 + ORR1B2 LTR MaLR 316 359 -8 7 665 348 265 62 62 chr11 10559594 10559755 -111284101 - RLTR42-int LTR ERVK -4140 1382 1222 7 665 4099 258 45 22 chr11 10560055 10561111 -111282745 - Lx5 LINE L1 -6 7044 5965 8 665 3800 214 63 25 chr11 10561111 10561980 -111281876 - RMER19B LTR ERVK 0 902 1 8 665 866 170 64 6 chr11 10561981 10562153 -111281703 - Lx5 LINE L1 -1081 5969 5788 8 665 2705 206 69 7 chr11 10562156 10562761 -111281095 - Lx2B LINE L1 -2 6998 6356 8 665 1651 59 6 21 chr11 10562773 10563031 -111280825 + ORR1A1 LTR MaLR 75 344 -2 8 665 3293 145 30 0 chr11 10563031 10563570 -111280286 + Lx2A1 LINE L1 6454 7008 0 8 665 2408 205 86 0 chr11 10563570 10563749 -111280107 + Lx4B LINE L1 5285 5465 -412 8 665 1437 65 5 5 chr11 10563749 10563936 -111279920 + B2_Mm1a SINE B2 2 188 -5 8 665 5082 215 120 9 chr11 10563936 10565302 -111278554 + Lx4B LINE L1 5466 7002 -56 8 665 440 246 17 0 chr11 10565615 10565733 -111278123 - Lx9 LINE L1 -7 7637 7518 8 665 531 229 0 0 chr11 10565745 10565850 -111278006 + Lx9 LINE L1 7298 7402 -242 8 665 1148 82 0 0 chr11 10566548 10566694 -111277162 - B1_Mus1 SINE Alu -1 147 2 8 665 843 277 62 7 chr11 10566701 10566977 -111276879 - RCHARR1 DNA MER1_type -3 971 681 8 665 940 79 71 0 chr11 10567007 10567134 -111276722 - L1Md_F2 LINE L1 -214 5669 5534 9 665 7303 58 0 3 chr11 10567134 10568066 -111275790 + L1Md_F2 LINE L1 5654 6582 0 9 665 326 284 83 48 chr11 10568995 10569213 -111274643 + L1MC LINE L1 3893 4118 -2028 9 665 32545 31 24 8 chr11 10569765 10574553 -111269303 - L1Md_A LINE L1 -576 5307 450 9 665 12592 102 10 3 chr11 10574549 10577294 -111266562 - L1VL1 LINE L1 -2708 3175 409 9 665 2745 184 78 75 chr11 10577407 10578007 -111265849 - RMER19C LTR ERVK -9 602 1 9 665 2387 280 32 55 chr11 10578037 10579140 -111264716 - L1_Mur3 LINE L1 -860 5020 3947 9 665 423 0 0 0 chr11 10579140 10579187 -111264669 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 665 2387 280 32 55 chr11 10579187 10579310 -111264546 - L1_Mur3 LINE L1 -1934 3946 3823 9 665 624 299 33 111 chr11 10581029 10581086 -111262770 + MTEa LTR MaLR 130 176 -203 9 665 3737 199 16 19 chr11 10581086 10581835 -111262021 + Lx4B LINE L1 6304 7050 -8 9 665 625 293 40 23 chr11 10581835 10582048 -111261808 + MTEa LTR MaLR 177 379 0 9 665 246 294 29 0 chr11 10582049 10582117 -111261739 + MTEa-int LTR MaLR 3 72 -1508 9 665 680 299 38 34 chr11 10582097 10582336 -111261520 + MTEa-int LTR MaLR 1324 1563 -17 9 665 1353 79 5 15 chr11 10582359 10582565 -111261291 - Lx3_Mus LINE L1 0 7009 6806 9 665 4263 92 0 0 chr11 10582565 10583130 -111260726 + Lx3_Mus LINE L1 6238 6802 -207 9 665 542 61 12 0 chr11 10583289 10583371 -111260485 - L1Md_F2 LINE L1 0 6582 6500 1 665 525 340 166 6 chr11 10583440 10583760 -111260096 + MTEa LTR MaLR 7 377 -2 1 665 3035 132 1 0 chr11 10584441 10585052 -111258804 - Lx LINE L1 -682 5972 5360 1 665 1888 165 3 0 chr11 10585044 10585372 -111258484 + L1_Mur2 LINE L1 4647 4975 -902 1 665 1721 320 113 25 chr11 10585973 10586073 -111257783 - Lx9 LINE L1 -25 7619 7513 1 665 246 62 0 0 chr11 10586073 10586105 -111257751 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1 665 1721 320 113 25 chr11 10586105 10586495 -111257361 - Lx9 LINE L1 -132 7512 7044 1 665 2219 88 82 0 chr11 10586495 10586823 -111257033 + IAPEY2_LTR LTR ERVK 1 355 -2 1 665 1721 320 113 25 chr11 10586823 10587439 -111256417 - Lx9 LINE L1 -601 7043 6416 1 665 3789 55 28 2 chr11 10587448 10587942 -111255914 + L1_Mus2 LINE L1 6058 6564 -2 1 665 774 335 63 50 chr11 10588159 10588558 -111255298 - MTD LTR MaLR -15 404 1 1 665 414 0 0 0 chr11 10588918 10588964 -111254892 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 665 253 267 106 57 chr11 10590552 10590675 -111253181 - Charlie4z DNA MER1_type -35 132 4 1 665 762 285 96 5 chr11 10592314 10592522 -111251334 + B4A SINE B4 10 236 -56 1 665 552 311 159 30 chr11 10593326 10593697 -111250159 + Lx9 LINE L1 7020 7438 -206 1 665 28 29 0 0 chr11 10593941 10593976 -111249880 + AT_rich Low_complexity Low_complexity 1 35 0 1 665 368 118 15 0 chr11 10594324 10594392 -111249464 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 665 1902 9 0 0 chr11 10594883 10595102 -111248754 - L1Md_A LINE L1 0 6582 6364 1 665 693 0 0 0 chr11 10595516 10595593 -111248263 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 1 665 2493 152 107 30 chr11 10595604 10596079 -111247777 - Lx4A LINE L1 -4 7054 6543 1 665 231 36 0 0 chr11 10596988 10597016 -111246840 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 665 285 333 33 0 chr11 10597020 10597110 -111246746 - MER2B DNA MER2_type -32 304 212 1 665 324 327 88 63 chr11 10597176 10597414 -111246442 + L1MC4 LINE L1 6730 6973 -1069 1 665 21 36 0 0 chr11 10597494 10597522 -111246334 + AT_rich Low_complexity Low_complexity 1 28 0 1 665 909 74 0 0 chr11 10597575 10597697 -111246159 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 1 665 562 344 114 54 chr11 10597727 10597835 -111246021 + MLT1F1 LTR MaLR 3 112 -457 1 665 3188 165 31 3 chr11 10597835 10598413 -111245443 - Lx2 LINE L1 -1 6996 6403 1 665 562 344 114 54 chr11 10598413 10598673 -111245183 + MLT1F1 LTR MaLR 113 393 -176 1 665 21500 102 11 5 chr11 10598734 10602696 -111241160 - Lx3A LINE L1 0 6981 3007 1 665 630 39 0 0 chr11 10602696 10602773 -111241083 + (TTG)n Simple_repeat Simple_repeat 2 78 0 1 665 21500 92 10 6 chr11 10602773 10603019 -111240837 - Lx3A LINE L1 -2880 3006 2756 1 665 225 330 121 0 chr11 10603473 10603564 -111240292 + LTR69 LTR ERVL 458 559 -29 1 665 2721 0 0 0 chr11 10603673 10603974 -111239882 - L1Md_T LINE L1 -695 5887 5587 1 665 5988 7 0 5 chr11 10603979 10604653 -111239203 + L1Md_T LINE L1 5912 6582 0 1 665 219 328 0 0 chr11 10604814 10604872 -111238984 + ID4_ SINE ID 26 83 0 1 665 340 281 76 23 chr11 10604903 10605034 -111238822 - MER57C2 LTR ERV1 -11 423 286 1 665 486 296 20 7 chr11 10605048 10605201 -111238655 - MER57C2 LTR ERV1 -273 161 7 1 665 1098 96 0 0 chr11 10605941 10606087 -111237769 + B1_Mus2 SINE Alu 2 147 0 1 665 205 242 0 0 chr11 10606087 10606108 -111237748 + A-rich Low_complexity Low_complexity 1 21 0 1 665 1058 95 0 26 chr11 10606108 10606259 -111237597 + B1_Mm SINE Alu 1 147 0 1 665 205 242 0 0 chr11 10606259 10606299 -111237557 + A-rich Low_complexity Low_complexity 22 61 0 1 665 1510 229 82 5 chr11 10606637 10606771 -111237085 - Lx9 LINE L1 -2 7642 7482 1 665 378 0 0 0 chr11 10606771 10606813 -111237043 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 665 1510 229 82 5 chr11 10606813 10606826 -111237030 - Lx9 LINE L1 -163 7481 7468 1 665 433 58 29 0 chr11 10606826 10606895 -111236961 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 665 1510 229 82 5 chr11 10606895 10607159 -111236697 - Lx9 LINE L1 -177 7467 7199 1 665 254 161 47 31 chr11 10607734 10607798 -111236058 + L1MB7 LINE L1 6110 6174 -10 1 665 395 340 159 35 chr11 10607879 10608281 -111235575 + L1MC3 LINE L1 56 507 -5538 1 665 452 315 116 53 chr11 10608388 10608673 -111235183 - MER44B DNA MER2_type -32 518 216 1 665 22 0 0 0 chr11 10609071 10609093 -111234763 + AT_rich Low_complexity Low_complexity 1 22 0 1 665 1039 246 93 59 chr11 10609586 10609717 -111234139 - ORR1D1 LTR MaLR 0 374 229 1 665 315 0 0 0 chr11 10609717 10609752 -111234104 + (CAGG)n Simple_repeat Simple_repeat 4 38 0 1 665 1039 246 93 59 chr11 10609752 10609974 -111233882 - ORR1D1 LTR MaLR -146 228 9 1 665 322 354 82 30 chr11 10610005 10610308 -111233548 + L1MC3 LINE L1 1493 1811 -4940 1 665 261 0 0 0 chr11 10611105 10611134 -111232722 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 665 411 21 0 0 chr11 10611134 10611182 -111232674 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 665 455 273 141 27 chr11 10611561 10611996 -111231860 + L1MC3 LINE L1 4741 5234 -1330 1 665 417 384 75 40 chr11 10612149 10612350 -111231506 - B4A SINE B4 -84 208 1 1 665 709 331 55 40 chr11 10612773 10613100 -111230756 + MTEa LTR MaLR 34 365 -14 1 665 236 167 0 0 chr11 10613132 10613174 -111230682 + L1MC3 LINE L1 5866 5907 -844 1 665 1164 259 171 40 chr11 10613349 10613823 -111230033 + RMER2 LTR ERV1 1 536 -31 1 665 353 372 41 41 chr11 10613834 10614196 -111229660 + L1MC3 LINE L1 6185 6546 -216 1 665 640 261 25 49 chr11 10614231 10614410 -111229446 + L1MC3 LINE L1 6621 6796 -1407 1 665 2129 145 72 3 chr11 10614410 10614784 -111229072 - RLTR9D LTR ERVK -3 400 1 1 665 640 261 25 49 chr11 10614784 10614890 -111228966 + L1MC3 LINE L1 6797 6899 -1304 1 665 294 290 63 60 chr11 10614980 10615301 -111228555 + L1MC3 LINE L1 7113 7448 -965 1 665 471 276 61 52 chr11 10615424 10615768 -111228088 + L1MC3 LINE L1 7838 8184 -19 1 665 21 0 0 0 chr11 10615988 10616009 -111227847 + AT_rich Low_complexity Low_complexity 1 21 0 1 83 1095 67 16 99 chr11 10616793 10616975 -111226881 - URR1A DNA MER1_type -1 225 59 1 666 225 350 16 55 chr11 10617764 10617891 -111225965 - MIR3 SINE MIR -9 199 78 1 666 637 326 25 10 chr11 10618872 10619070 -111224786 + ID_B1 SINE B4 1 201 -23 1 666 347 290 80 90 chr11 10619233 10619445 -111224411 - B3 SINE B2 -5 211 2 1 666 892 317 118 24 chr11 10619480 10619861 -111223995 - MTD LTR MaLR -2 417 1 1 666 831 289 0 10 chr11 10620867 10621048 -111222808 + MTD LTR MaLR 5 183 -236 1 666 1747 242 133 20 chr11 10621048 10621137 -111222719 - RLTR20D LTR ERVK 0 568 479 1 666 420 20 0 0 chr11 10621137 10621186 -111222670 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 666 1747 242 133 20 chr11 10621186 10621606 -111222250 - RLTR20D LTR ERVK -90 478 2 1 666 521 313 48 57 chr11 10621606 10621798 -111222058 + MTD LTR MaLR 178 367 -52 1 666 1254 306 78 37 chr11 10622435 10622634 -111221222 - Lx9 LINE L1 -451 7193 6969 1 666 1346 66 11 21 chr11 10622634 10622820 -111221036 + B2_Mm1a SINE B2 1 184 -9 1 666 1254 306 78 37 chr11 10622820 10623136 -111220720 - Lx9 LINE L1 -676 6968 6657 1 666 561 237 162 56 chr11 10623197 10623394 -111220462 - Lx9 LINE L1 -451 7193 6976 1 666 1893 96 31 22 chr11 10623679 10623998 -111219858 - RLTRETN_Mm LTR ERVK 0 322 1 1 666 598 291 112 0 chr11 10624191 10624370 -111219486 + ID_B1 SINE B4 6 204 -20 1 666 181 277 65 56 chr11 10625052 10625159 -111218697 + L3 LINE CR1 2160 2267 -2222 1 666 180 264 127 89 chr11 10626314 10626393 -111217463 - MIRb SINE MIR -74 194 113 1 666 189 0 0 0 chr11 10626553 10626574 -111217282 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 666 468 93 0 0 chr11 10626574 10626649 -111217207 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 666 374 204 172 0 chr11 10626655 10626748 -111217108 - RSINE1 SINE B4 -46 119 11 1 666 1382 75 5 21 chr11 10626789 10626980 -111216876 + B2_Mm1t SINE B2 2 189 -4 1 666 5684 184 92 23 chr11 10627156 10627521 -111216335 + RMER12 LTR ERVK 4 369 -953 1 666 3042 63 189 9 chr11 10627521 10627955 -111215901 - RLTR1B LTR ERV1 0 512 1 1 666 5684 184 92 23 chr11 10627955 10628477 -111215379 + RMER12 LTR ERVK 370 890 -432 1 666 270 115 0 0 chr11 10628477 10628529 -111215327 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 666 5684 184 92 23 chr11 10628529 10628840 -111215016 + RMER12 LTR ERVK 891 1284 -38 1 666 234 0 0 0 chr11 10628917 10628943 -111214913 + (A)n Simple_repeat Simple_repeat 1 26 0 1 666 5792 80 9 16 chr11 10629399 10630213 -111213643 + RLTR13C2 LTR ERVK 1 808 0 1 666 572 261 105 11 chr11 10631323 10631368 -111212488 - B3 SINE B2 -7 209 154 1 666 384 22 0 0 chr11 10631368 10631413 -111212443 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 666 572 261 105 11 chr11 10631413 10631557 -111212299 - B3 SINE B2 -63 153 2 1 666 341 109 0 0 chr11 10631939 10631985 -111211871 - tRNA-Met_ tRNA tRNA -30 46 1 1 666 1859 120 37 46 chr11 10631992 10632341 -111211515 + Lx2 LINE L1 6426 6771 -226 1 666 279 0 0 0 chr11 10632405 10632436 -111211420 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 666 1204 49 0 0 chr11 10632933 10633077 -111210779 + B1_Mm SINE Alu 3 146 -1 1 666 441 131 10 111 chr11 10633081 10633279 -111210577 + A-rich Low_complexity Low_complexity 2 179 0 1 666 3441 28 0 0 chr11 10633330 10633726 -111210130 - MTA_Mm LTR MaLR 0 396 1 1 666 247 306 135 95 chr11 10633747 10633895 -111209961 - B3A SINE B2 -3 195 42 1 666 1107 286 93 0 chr11 10633898 10634199 -111209657 + MTD LTR MaLR 1 329 -90 1 666 23 33 0 0 chr11 10634199 10634229 -111209627 + AT_rich Low_complexity Low_complexity 1 30 0 1 666 23 0 0 0 chr11 10636155 10636178 -111207678 + AT_rich Low_complexity Low_complexity 1 23 0 1 666 23402 172 21 18 chr11 10636878 10638625 -111205231 + Lx LINE L1 587 2308 -3575 1 666 1567 58 5 0 chr11 10638625 10638830 -111205026 - L1_Mus1 LINE L1 0 6567 6362 1 666 23402 160 15 10 chr11 10638830 10643108 -111200748 + Lx LINE L1 2309 6642 -12 1 666 249 57 0 0 chr11 10643110 10643145 -111200711 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 666 3219 23 10 8 chr11 10643855 10644245 -111199611 + L1Md_F3 LINE L1 6194 6584 0 1 666 1898 103 14 0 chr11 10644411 10644692 -111199164 - L1_Mus4 LINE L1 -2 6634 6350 1 666 262 208 0 0 chr11 10645518 10645571 -111198285 + L1MA6 LINE L1 5944 5996 -304 1 666 315 0 0 0 chr11 10646187 10646222 -111197634 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 666 468 303 63 9 chr11 10646968 10647171 -111196685 - L1M4 LINE L1 -1460 4686 4471 1 666 302 190 0 0 chr11 10647171 10647229 -111196627 - Lx8 LINE L1 -2 7471 7414 1 666 468 303 63 9 chr11 10647229 10647342 -111196514 - L1M4 LINE L1 -1676 4470 4354 1 666 478 298 25 50 chr11 10647367 10647565 -111196291 - B3A SINE B2 -3 195 3 1 666 309 161 18 0 chr11 10647742 10647798 -111196058 - HAL1-3A_ME LINE L1 -824 2034 1978 1 666 252 257 29 0 chr11 10647853 10647923 -111195933 - L1MD LINE L1 -2057 4089 4018 1 666 239 133 22 0 chr11 10647959 10648004 -111195852 + CT-rich Low_complexity Low_complexity 1 46 0 1 666 226 273 76 108 chr11 10648244 10648429 -111195427 - RMER1C Other Other -23 1319 1141 2 666 2293 269 92 99 chr11 10648523 10649639 -111194217 + Lx7 LINE L1 6253 7361 -335 2 666 558 321 77 30 chr11 10650102 10650572 -111193284 + L1_Rod LINE L1 2011 2521 -4186 2 666 1946 146 11 36 chr11 10650584 10650940 -111192916 - Lx2 LINE L1 0 6997 6651 2 666 2138 165 26 0 chr11 10650940 10651292 -111192564 + ORR1B1 LTR MaLR 11 371 -23 2 666 1030 170 127 4 chr11 10651295 10651531 -111192325 + Lx2A1 LINE L1 6741 7005 -3 2 666 216 0 0 0 chr11 10651861 10651885 -111191971 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 666 949 241 140 24 chr11 10651988 10652273 -111191583 + L1_Rod LINE L1 3125 3656 -3678 2 666 324 0 0 0 chr11 10652273 10652309 -111191547 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 666 949 279 132 31 chr11 10652309 10652707 -111191149 + L1_Rod LINE L1 3447 3857 -2850 2 666 351 0 0 0 chr11 10652754 10652793 -111191063 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 666 7581 85 2 0 chr11 10653116 10654470 -111189386 - L1_Mus2 LINE L1 0 6566 5209 2 666 654 322 73 31 chr11 10655304 10655835 -111188021 + L1M3 LINE L1 3780 4340 -1803 2 666 211 224 69 0 chr11 10656437 10656495 -111187361 + CT-rich Low_complexity Low_complexity 5 66 0 2 666 564 15 0 0 chr11 10656504 10656569 -111187287 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 666 290 255 58 10 chr11 10656865 10656968 -111186888 - MTE2b LTR MaLR -271 108 1 2 666 408 372 78 40 chr11 10657562 10658035 -111185821 + L1ME4a LINE L1 5474 5964 -160 2 666 1510 43 0 0 chr11 10658091 10658278 -111185578 + L1_Mus1 LINE L1 6380 6566 -1 2 666 26 0 0 0 chr11 10658278 10658304 -111185552 + AT_rich Low_complexity Low_complexity 1 26 0 2 666 229 293 13 13 chr11 10660069 10660145 -111183711 + LTR80B LTR ERVL 268 343 -241 2 666 2969 21 0 0 chr11 10660316 10660653 -111183203 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 666 55272 22 15 8 chr11 10660653 10667083 -111176773 + IAPEz-int LTR ERVK 8 6481 0 2 666 2953 15 3 0 chr11 10667083 10667419 -111176437 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 666 202 321 0 0 chr11 10667741 10667797 -111176059 + CT-rich Low_complexity Low_complexity 1 56 0 2 666 471 275 87 59 chr11 10669231 10669517 -111174339 - L1MB3 LINE L1 -11 6172 5879 2 666 1100 219 9 22 chr11 10669524 10669569 -111174287 - MTC LTR MaLR 0 421 377 2 666 416 79 0 0 chr11 10669569 10669632 -111174224 + L1_Mus2 LINE L1 6504 6566 0 2 666 1100 219 9 22 chr11 10669632 10669815 -111174041 - MTC LTR MaLR -45 376 197 2 666 554 50 0 29 chr11 10669826 10669929 -111173927 - L1Md_F3 LINE L1 -12 6572 6473 2 666 1767 38 14 0 chr11 10669929 10670140 -111173716 + L1_Mm LINE L1 5486 5699 -184 2 666 1061 234 36 65 chr11 10670140 10670419 -111173437 - MTC LTR MaLR -134 287 17 2 666 2195 191 50 11 chr11 10670420 10670881 -111172975 - RLTR20B3 LTR ERVK -6 571 93 2 666 257 240 74 44 chr11 10671049 10671184 -111172672 - Lx8 LINE L1 -19 7454 7316 2 666 245 247 124 0 chr11 10671249 10671338 -111172518 - Lx9 LINE L1 -158 7486 7387 2 666 22 0 0 0 chr11 10672127 10672149 -111171707 + AT_rich Low_complexity Low_complexity 1 22 0 2 666 248 264 68 48 chr11 10672762 10672969 -111170887 - L1M2 LINE L1 -2946 3197 2987 2 666 31 44 0 0 chr11 10672994 10673039 -111170817 + AT_rich Low_complexity Low_complexity 1 45 0 2 666 831 265 97 116 chr11 10673116 10673539 -111170317 - RLTR28B LTR ERVL -38 443 29 2 666 449 338 109 25 chr11 10673609 10673976 -111169880 - L1M2 LINE L1 -3394 2749 2352 2 666 1984 231 96 8 chr11 10673978 10674468 -111169388 + MT2A LTR ERVL 1 533 0 2 666 1107 71 0 0 chr11 10674865 10675006 -111168850 + B1_Mus1 SINE Alu 2 142 -6 2 666 450 0 0 0 chr11 10675007 10675057 -111168799 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 666 225 307 34 42 chr11 10676134 10676253 -111167603 - Lx7 LINE L1 0 7696 7579 2 666 189 132 0 0 chr11 10676260 10676298 -111167558 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 666 524 260 47 4 chr11 10676309 10676520 -111167336 - Lx7 LINE L1 -328 7368 7042 2 666 622 77 0 57 chr11 10677028 10677139 -111166717 - MusHAL1 LINE L1 0 2712 2608 2 666 3455 13 8 0 chr11 10677139 10677532 -111166324 - MTA_Mm LTR MaLR 0 396 1 2 666 622 77 0 57 chr11 10677532 10677544 -111166312 - MusHAL1 LINE L1 -105 2607 2596 2 666 2993 227 20 110 chr11 10677564 10677983 -111165873 + L1VL4 LINE L1 131 540 -5762 2 666 5249 62 10 3 chr11 10677983 10678660 -111165196 + L1Md_F2 LINE L1 5886 6567 -15 2 666 4028 141 16 45 chr11 10678660 10679653 -111164203 + L1VL4 LINE L1 541 1463 -2096 2 666 1711 107 11 21 chr11 10679642 10679928 -111163928 + L1VL4 LINE L1 1601 1883 -1676 2 666 9049 113 18 8 chr11 10679925 10682136 -111161720 - L1VL4 LINE L1 -1309 2250 17 2 666 246 231 58 0 chr11 10682136 10682188 -111161668 - L1VL4 LINE L1 -6067 235 181 2 666 5892 18 0 0 chr11 10682497 10683170 -111160686 + L1Md_A LINE L1 5910 6582 0 2 666 654 191 0 0 chr11 10683336 10683467 -111160389 + (CTA)n Simple_repeat Simple_repeat 1 131 0 2 666 4610 67 0 0 chr11 10683882 10684466 -111159390 - L1_Mus1 LINE L1 0 6567 5984 2 666 3045 75 19 2 chr11 10684493 10684717 -111159139 - BGLII_Mus LTR ERVK 0 422 192 2 666 600 53 0 0 chr11 10684717 10684793 -111159063 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 666 3045 75 19 2 chr11 10684793 10684983 -111158873 - BGLII_Mus LTR ERVK -231 191 2 2 666 1539 215 61 77 chr11 10685222 10685516 -111158340 - MTC LTR MaLR 0 421 129 2 666 324 0 0 0 chr11 10685516 10685552 -111158304 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2 666 1539 215 61 77 chr11 10685552 10685685 -111158171 - MTC LTR MaLR -293 128 2 2 666 273 195 132 85 chr11 10685733 10685862 -111157994 - MTEb LTR MaLR -102 277 143 2 666 1104 78 0 0 chr11 10686185 10686326 -111157530 + B1_Mus1 SINE Alu 2 142 -6 2 666 180 0 0 0 chr11 10686329 10686349 -111157507 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 666 3005 171 34 25 chr11 10687258 10687724 -111156132 + RLTR20D LTR ERVK 1 463 -105 2 666 423 0 0 0 chr11 10687724 10687771 -111156085 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 666 3005 171 34 25 chr11 10687771 10687867 -111155989 + RLTR20D LTR ERVK 464 567 -1 2 666 3590 195 42 22 chr11 10688843 10689898 -111153958 - RLTR13D2 LTR ERVK 0 1023 164 2 666 18902 138 18 11 chr11 10689898 10693865 -111149991 - L1VL1 LINE L1 -1455 4428 437 2 666 6057 194 26 9 chr11 10693868 10695234 -111148622 + L1_Mur2 LINE L1 2574 3962 -1915 2 666 515 184 25 42 chr11 10695236 10695355 -111148501 + Lx5 LINE L1 6928 7044 -6 2 666 22 56 0 0 chr11 10695448 10695484 -111148372 + AT_rich Low_complexity Low_complexity 1 36 0 2 666 232 292 0 0 chr11 10695602 10695691 -111148165 + T-rich Low_complexity Low_complexity 1 89 0 2 666 1366 108 5 9 chr11 10695704 10695919 -111147937 - L1Md_F2 LINE L1 -2 6580 6367 2 666 405 0 0 0 chr11 10696816 10696861 -111146995 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 666 938 294 108 25 chr11 10697705 10698061 -111145795 + MTD LTR MaLR 20 399 -20 2 666 320 333 52 52 chr11 10699052 10699188 -111144668 - RSINE1 SINE B4 -29 136 1 2 666 27 29 0 0 chr11 10699366 10699400 -111144456 + AT_rich Low_complexity Low_complexity 1 34 0 2 666 253 291 22 65 chr11 10699473 10699565 -111144291 - RLTR25B LTR ERVK -500 528 441 2 666 530 235 49 0 chr11 10699497 10699599 -111144257 - B1_Mus2 SINE Alu -40 107 1 2 666 351 315 0 0 chr11 10700730 10700822 -111143034 + MER2B DNA MER2_type 76 167 -169 2 666 189 109 43 21 chr11 10700847 10700894 -111142962 + (CATA)n Simple_repeat Simple_repeat 3 50 0 2 666 371 276 0 31 chr11 10701751 10701848 -111142008 + MER34A LTR ERV1 25 118 -453 2 666 227 31 0 30 chr11 10701852 10701885 -111141971 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 666 24 0 0 0 chr11 10702124 10702148 -111141708 + AT_rich Low_complexity Low_complexity 1 24 0 2 666 575 108 33 0 chr11 10702382 10702502 -111141354 + (TA)n Simple_repeat Simple_repeat 2 125 0 2 666 2008 210 60 5 chr11 10702528 10702964 -111140892 + MERVL_2A-int LTR ERVL 1 460 -5301 2 666 22 0 0 0 chr11 10703120 10703142 -111140714 + AT_rich Low_complexity Low_complexity 1 22 0 2 666 312 310 129 5 chr11 10703544 10703745 -111140111 - Charlie2a DNA MER1_type -863 1998 1773 2 666 7163 122 11 6 chr11 10704229 10705318 -111138538 - Lx2 LINE L1 -242 6755 5662 2 666 1544 148 31 0 chr11 10705318 10705575 -111138281 + Lx2 LINE L1 6733 6997 0 2 666 32530 74 2 2 chr11 10705643 10710988 -111132868 + L1Md_F2 LINE L1 244 5585 -298 2 666 8166 46 0 1 chr11 10710989 10711986 -111131870 + L1Md_F2 LINE L1 5587 6582 0 2 666 180 0 0 0 chr11 10712084 10712104 -111131752 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 666 387 0 0 0 chr11 10712289 10712332 -111131524 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 666 367 147 15 0 chr11 10712807 10712875 -111130981 + L1_Rod LINE L1 5755 5823 -24 2 666 235 250 59 12 chr11 10713260 10713345 -111130511 - MER90a LTR ERV1 -357 257 169 2 666 247 340 32 13 chr11 10713392 10713547 -111130309 - Charlie2a DNA MER1_type -1217 1644 1487 2 666 251 303 11 11 chr11 10713982 10714072 -111129784 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 666 953 53 8 0 chr11 10714268 10714400 -111129456 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 2 666 1178 215 24 0 chr11 10714442 10714651 -111129205 + Lx9 LINE L1 6318 6531 -1113 2 666 3767 222 37 53 chr11 10714646 10715670 -111128186 + Lx9 LINE L1 6637 7644 0 2 666 320 370 122 7 chr11 10717402 10717541 -111126315 + RSINE1 SINE B4 1 155 -10 2 666 23 68 0 0 chr11 10717636 10717680 -111126176 + AT_rich Low_complexity Low_complexity 1 44 0 2 666 320 261 149 31 chr11 10719875 10720097 -111123759 + L1ME4a LINE L1 5630 5877 -247 2 666 295 284 14 0 chr11 10720520 10720594 -111123262 - B1_Mur2 SINE Alu -1 148 74 2 666 5118 112 0 9 chr11 10720997 10721134 -111122722 - L1_Mm LINE L1 -1923 3960 3829 2 666 2538 90 79 3 chr11 10721134 10721502 -111122354 + MTA_Mm LTR MaLR 1 396 0 2 666 5118 112 0 9 chr11 10721502 10722148 -111121708 - L1_Mm LINE L1 -2055 3828 3184 2 666 2581 111 0 8 chr11 10722143 10722543 -111121313 - MusHAL1 LINE L1 -942 1770 1374 2 666 207 162 0 0 chr11 10722829 10722866 -111120990 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2 666 1025 84 0 27 chr11 10722947 10723093 -111120763 - B1_Mm SINE Alu 0 147 6 2 666 324 0 0 0 chr11 10723516 10723552 -111120304 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 666 420 411 0 19 chr11 10723555 10723709 -111120147 - RSINE1 SINE B4 -11 154 4 2 666 232 340 8 102 chr11 10723678 10723721 -111120135 - ID_B1 SINE B4 -1 223 117 2 666 286 347 0 0 chr11 10723721 10723796 -111120060 - PB1D10 SINE Alu -7 110 36 2 666 1131 112 0 0 chr11 10724697 10724867 -111118989 + (CA)n Simple_repeat Simple_repeat 1 170 0 3 666 23 0 0 0 chr11 10724951 10724974 -111118882 + AT_rich Low_complexity Low_complexity 1 23 0 3 666 1543 258 61 74 chr11 10725164 10726045 -111117811 - L1MD1 LINE L1 -267 6092 5211 3 666 270 0 0 0 chr11 10726054 10726084 -111117772 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 3 666 235 337 19 38 chr11 10726085 10726190 -111117666 - B1F SINE Alu -10 139 37 3 666 249 206 73 0 chr11 10726214 10726282 -111117574 - L1MD1 LINE L1 -928 5218 5146 3 666 551 62 12 0 chr11 10726303 10726383 -111117473 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 666 21 0 0 0 chr11 10726607 10726628 -111117228 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 455 251 61 42 chr11 10726672 10726941 -111116915 + Lx9 LINE L1 5452 5688 -476 3 666 2150 38 0 0 chr11 10726940 10727204 -111116652 - L1Md_F2 LINE L1 -1327 4556 4293 3 666 8519 60 0 0 chr11 10727199 10728273 -111115583 + L1Md_F2 LINE L1 4513 5586 -297 3 666 7991 46 4 10 chr11 10728273 10729275 -111114581 + L1Md_F2 LINE L1 5587 6582 0 3 666 292 291 92 50 chr11 10729295 10729555 -111114301 + L1MB8 LINE L1 5711 5981 -197 3 666 4687 135 29 7 chr11 10729719 10730472 -111113384 + Lx2 LINE L1 6227 6996 -1 3 666 376 250 49 24 chr11 10731428 10731551 -111112305 + L1M4c LINE L1 2222 2347 -4037 3 666 379 332 77 53 chr11 10731570 10731869 -111111987 + L1M4c LINE L1 2370 2675 -3707 3 666 22 35 0 0 chr11 10731908 10731937 -111111919 + AT_rich Low_complexity Low_complexity 1 29 0 3 666 249 309 11 90 chr11 10732695 10732784 -111111072 - ID SINE ID -141 83 2 3 666 483 60 0 0 chr11 10733091 10733158 -111110698 + (ATTG)n Simple_repeat Simple_repeat 1 67 0 3 666 210 326 64 21 chr11 10734325 10734419 -111109437 - MIRb SINE MIR -74 194 97 3 666 390 349 72 74 chr11 10735636 10736041 -111107815 + L1MB8 LINE L1 5760 6163 -15 3 666 252 154 21 62 chr11 10737062 10737159 -111106697 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 666 195 42 0 0 chr11 10737193 10737217 -111106639 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 666 291 325 78 23 chr11 10737322 10737451 -111106405 - RMER15-int LTR ERVL -2775 2224 2089 3 666 402 100 0 0 chr11 10737593 10737653 -111106203 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 666 968 239 247 77 chr11 10737665 10738119 -111105737 - MT2B LTR ERVL -70 531 1 3 666 367 217 58 0 chr11 10738339 10738459 -111105397 - Lx9 LINE L1 0 7644 7518 3 666 405 0 0 0 chr11 10738463 10738508 -111105348 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 666 2192 264 42 31 chr11 10738518 10739948 -111103908 - Lx9 LINE L1 -197 7447 5796 3 666 302 345 35 9 chr11 10739961 10740075 -111103781 - B1F SINE Alu 0 149 33 3 666 185 284 88 15 chr11 10740410 10740478 -111103378 - MIRb SINE MIR -183 85 13 3 666 1074 288 12 8 chr11 10742402 10742654 -111101202 + B4 SINE B4 5 257 -35 3 666 220 279 0 44 chr11 10742686 10742776 -111101080 + (CATA)n Simple_repeat Simple_repeat 2 87 0 3 666 23 33 0 0 chr11 10743091 10743121 -111100735 + AT_rich Low_complexity Low_complexity 1 30 0 3 666 549 0 0 0 chr11 10744439 10744500 -111099356 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 666 256 330 0 0 chr11 10744811 10744911 -111098945 + (TATG)n Simple_repeat Simple_repeat 1 100 0 3 666 297 0 0 0 chr11 10744931 10744964 -111098892 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 666 462 297 86 56 chr11 10745031 10745338 -111098518 - ORR1E LTR MaLR -3 376 8 3 666 287 280 212 61 chr11 10745486 10745962 -111097894 + L1MEc LINE L1 104 651 -5749 3 666 290 246 8 106 chr11 10746034 10746166 -111097690 + MLT1C LTR MaLR 334 452 -15 3 666 204 40 0 0 chr11 10746362 10746387 -111097469 + (A)n Simple_repeat Simple_repeat 1 25 0 3 666 321 315 105 33 chr11 10746727 10746937 -111096919 - L1M4 LINE L1 -2122 4024 3800 3 666 242 225 55 27 chr11 10747062 10747135 -111096721 - L1MC LINE L1 -2451 3695 3621 3 666 21 0 0 0 chr11 10747316 10747337 -111096519 + AT_rich Low_complexity Low_complexity 1 21 0 3 83 4083 224 53 14 chr11 10747352 10748570 -111095286 + Lx5 LINE L1 5542 6885 -173 3 667 790 278 6 0 chr11 10750135 10750308 -111093548 + B3A SINE B2 1 174 -24 3 667 264 418 26 19 chr11 10750681 10750837 -111093019 + LTR40a LTR ERVL 112 268 -251 3 667 342 322 53 45 chr11 10750964 10751208 -111092648 + L1M4 LINE L1 4448 4693 -1453 3 667 41 87 0 0 chr11 10751224 10751328 -111092528 + AT_rich Low_complexity Low_complexity 1 104 0 3 667 255 103 0 0 chr11 10751381 10751420 -111092436 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 667 40719 13 0 6 chr11 10751459 10757664 -111086192 - L1Md_A LINE L1 0 6582 422 3 667 549 0 0 0 chr11 10757931 10757992 -111085864 + (TTTC)n Simple_repeat Simple_repeat 3 63 0 3 667 712 333 14 18 chr11 10758613 10758830 -111085026 + B4A SINE B4 71 286 -6 3 667 352 299 133 57 chr11 10758874 10758899 -111084957 + L1M5 LINE L1 2997 3024 -3122 3 667 3127 86 9 7 chr11 10758899 10759335 -111084521 - RLTR9B LTR ERVK 0 437 1 3 667 352 299 133 57 chr11 10759335 10759557 -111084299 + L1M5 LINE L1 3025 3263 -2883 3 667 392 307 38 38 chr11 10759637 10759796 -111084060 - RLTR14 LTR ERV1 0 382 224 3 667 382 136 0 15 chr11 10760456 10760523 -111083333 + ORR1A2 LTR MaLR 1 66 -263 3 667 2346 135 14 43 chr11 10760518 10760936 -111082920 - RMER13B LTR ERVK -502 406 1 3 667 1545 132 32 0 chr11 10760938 10761187 -111082669 + ORR1A2 LTR MaLR 71 327 0 3 667 781 261 37 31 chr11 10761432 10761717 -111082139 - MTE2b LTR MaLR 0 379 96 3 667 315 308 29 0 chr11 10762237 10762341 -111081515 - MTE-int LTR MaLR -3 1577 1471 3 667 593 294 59 22 chr11 10762417 10762760 -111081096 + Lx8 LINE L1 5580 5970 -1503 3 667 2138 307 96 10 chr11 10762943 10763711 -111080145 + Lx8 LINE L1 6202 7035 -438 3 667 351 262 65 75 chr11 10765529 10765715 -111078141 - MTEb LTR MaLR -2 377 194 3 667 268 150 0 16 chr11 10765953 10766014 -111077842 - Lx9 LINE L1 -1 7643 7584 3 667 3866 256 102 35 chr11 10766234 10766686 -111077170 + Lx9 LINE L1 5838 6431 -1213 3 667 1117 75 0 39 chr11 10766686 10766839 -111077017 + B1_Mus2 SINE Alu 1 147 0 3 667 627 81 0 0 chr11 10766843 10766929 -111076927 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 3 667 3866 253 111 34 chr11 10766929 10767610 -111076246 + Lx9 LINE L1 6432 7185 -459 3 667 2425 224 47 91 chr11 10767610 10768504 -111075352 - RLTR13A LTR ERVK 0 855 1 3 667 3866 253 111 34 chr11 10768504 10768923 -111074933 + Lx9 LINE L1 7186 7623 -21 3 667 23 0 0 0 chr11 10768938 10768961 -111074895 + AT_rich Low_complexity Low_complexity 1 23 0 3 667 435 100 0 0 chr11 10769058 10769128 -111074728 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 3 667 477 0 0 0 chr11 10769128 10769181 -111074675 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 667 3586 254 69 19 chr11 10769184 10769410 -111074446 - Lx6 LINE L1 -16 7444 7216 3 667 4563 158 66 1 chr11 10769410 10770208 -111073648 + Lx LINE L1 5805 6654 0 3 667 3586 254 69 19 chr11 10770208 10770617 -111073239 - Lx6 LINE L1 -245 7215 6761 3 667 1086 23 0 0 chr11 10770617 10770746 -111073110 + (TCC)n Simple_repeat Simple_repeat 2 130 0 3 667 3586 254 69 19 chr11 10770746 10771080 -111072776 - Lx6 LINE L1 -700 6760 6426 3 667 513 329 109 23 chr11 10771082 10771607 -111072249 - Arthur1 DNA Tip100 -651 3296 2727 3 667 804 309 128 61 chr11 10771687 10771824 -111072032 - L1MA9 LINE L1 0 6312 6152 3 667 297 0 0 0 chr11 10771824 10771857 -111071999 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 667 804 309 128 61 chr11 10771857 10772470 -111071386 - L1MA9 LINE L1 -161 6151 5512 3 667 374 296 26 17 chr11 10772510 10772627 -111071229 - Arthur1 DNA Tip100 -3553 394 277 3 667 348 189 0 0 chr11 10772771 10772845 -111071011 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 667 344 115 0 0 chr11 10772845 10772897 -111070959 + HAL1-3A_ME LINE L1 1976 2027 -831 3 667 304 287 23 11 chr11 10773711 10773799 -111070057 + MLT1C LTR MaLR 379 467 0 3 667 23 33 0 0 chr11 10774182 10774212 -111069644 + AT_rich Low_complexity Low_complexity 1 30 0 3 667 240 320 90 34 chr11 10774582 10774760 -111069096 + L1M3 LINE L1 5509 5696 -493 3 667 547 224 21 63 chr11 10774760 10774903 -111068953 + ORR1D1 LTR MaLR 1 137 -237 3 667 903 99 0 0 chr11 10774905 10775046 -111068810 + (TC)n Simple_repeat Simple_repeat 2 142 0 3 667 853 242 20 28 chr11 10775295 10775580 -111068276 - Lx8 LINE L1 -121 7352 6997 3 667 28 61 0 0 chr11 10775732 10775781 -111068075 + AT_rich Low_complexity Low_complexity 1 49 0 3 667 351 0 0 0 chr11 10776303 10776342 -111067514 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 667 1561 261 30 70 chr11 10776423 10776930 -111066926 - RMER19C LTR ERVK -166 736 1 3 667 1059 276 4 8 chr11 10776949 10777194 -111066662 - Lx8 LINE L1 -258 7215 6972 3 667 368 322 29 0 chr11 10777456 10777627 -111066229 + L1MC LINE L1 5622 5797 -2085 3 667 423 0 0 0 chr11 10777909 10777956 -111065900 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 667 288 0 0 0 chr11 10777956 10777987 -111065869 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 667 2613 102 21 26 chr11 10778859 10779282 -111064574 - BGLII LTR ERVK 0 421 1 3 667 36190 31 0 0 chr11 10779286 10785525 -111058331 - L1Md_T LINE L1 0 6585 250 3 667 190 29 28 56 chr11 10787116 10787152 -111056704 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 667 231 385 77 0 chr11 10787514 10787605 -111056251 - ID_B1 SINE B4 -50 174 77 3 667 231 241 0 0 chr11 10788108 10788166 -111055690 + L1MEf LINE L1 1433 1490 -4710 3 667 423 0 0 0 chr11 10788221 10788268 -111055588 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 667 29 0 0 0 chr11 10788698 10788727 -111055129 + AT_rich Low_complexity Low_complexity 1 29 0 3 667 468 0 0 0 chr11 10789248 10789300 -111054556 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 667 273 308 73 57 chr11 10789355 10789479 -111054377 + MER20 DNA MER1_type 94 219 0 3 667 8343 17 1 0 chr11 10789498 10790493 -111053363 - L1Md_A LINE L1 0 6582 5587 3 667 24 0 0 0 chr11 10790517 10790541 -111053315 + AT_rich Low_complexity Low_complexity 1 24 0 3 667 1214 235 68 46 chr11 10791329 10791695 -111052161 - ORR1D1 LTR MaLR 0 374 1 3 667 909 260 5 0 chr11 10793993 10794189 -111049667 + B3 SINE B2 11 207 -9 3 667 504 0 0 0 chr11 10794795 10794851 -111049005 + (TAAAA)n Simple_repeat Simple_repeat 2 57 0 3 667 275 321 0 0 chr11 10795523 10795604 -111048252 + BC1_Mm scRNA scRNA 14 94 -58 4 667 903 156 287 0 chr11 10795856 10796179 -111047677 - Lx3C LINE L1 -2 6974 6559 4 667 948 311 110 59 chr11 10796277 10797732 -111046124 - L1MC3 LINE L1 -775 7010 5483 4 667 439 332 160 28 chr11 10797991 10798424 -111045432 - L1MC3 LINE L1 -941 5205 4693 4 667 266 0 0 29 chr11 10798424 10798459 -111045397 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 667 439 329 59 65 chr11 10798459 10798854 -111045002 - L1MC3 LINE L1 -1454 4692 4299 4 667 826 292 171 19 chr11 10798896 10799980 -111043876 - L1MC3 LINE L1 -1957 4189 2941 4 667 255 344 22 0 chr11 10800139 10800229 -111043627 - RMER15 LTR ERVL -113 462 371 4 667 300 83 0 0 chr11 10800326 10800374 -111043482 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 4 667 442 286 43 94 chr11 10800375 10800630 -111043226 - L1MCb LINE L1 -3295 3269 3028 4 667 304 280 171 6 chr11 10800782 10800940 -111042916 - L1MCb LINE L1 -4892 1153 970 4 667 320 333 71 6 chr11 10801057 10801226 -111042630 + L1ME3B LINE L1 5258 5437 -725 4 667 947 137 6 0 chr11 10801335 10801496 -111042360 + (GAAA)n Simple_repeat Simple_repeat 1 162 0 4 667 645 337 109 48 chr11 10801496 10801854 -111042002 - MLT2B3 LTR ERVL -19 535 156 4 667 386 200 20 31 chr11 10802034 10802132 -111041724 - MLT1A1 LTR MaLR -12 396 300 4 667 21 57 0 0 chr11 10802395 10802430 -111041426 + AT_rich Low_complexity Low_complexity 1 35 0 4 667 629 298 36 25 chr11 10802521 10802879 -111040977 + L1ME3B LINE L1 5670 6031 -209 4 667 273 321 103 5 chr11 10804064 10804258 -111039598 + L1M3 LINE L1 5676 5888 -301 4 667 1341 64 0 0 chr11 10804660 10804832 -111039024 - L1_Mus2 LINE L1 -1 6565 6394 4 667 717 253 34 6 chr11 10804874 10805049 -111038807 - B3A SINE B2 -18 180 1 4 667 503 276 39 0 chr11 10805325 10805452 -111038404 - B3A SINE B2 -13 185 54 4 667 464 377 123 39 chr11 10805564 10806102 -111037754 + L1M4b LINE L1 88 670 -6664 4 667 1889 155 9 58 chr11 10806110 10806453 -111037403 - ORR1A3 LTR MaLR 0 326 1 4 667 452 266 212 4 chr11 10806463 10806708 -111037148 + L1M4b LINE L1 990 1285 -6049 4 667 375 183 0 0 chr11 10806735 10806817 -111037039 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 667 250 59 38 38 chr11 10806817 10806870 -111036986 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 4 667 304 269 133 27 chr11 10807242 10807536 -111036320 + L1M4b LINE L1 1382 1706 -5628 4 667 246 277 139 35 chr11 10807976 10808062 -111035794 + PB1D10 SINE Alu 25 119 -1 4 667 340 311 37 9 chr11 10808250 10808357 -111035499 - MLT1B LTR MaLR -267 123 14 4 667 261 0 0 0 chr11 10808580 10808609 -111035247 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 667 21 36 0 0 chr11 10808786 10808814 -111035042 + AT_rich Low_complexity Low_complexity 1 28 0 4 667 1627 181 72 20 chr11 10809275 10809624 -111034232 - ORR1B2 LTR MaLR 0 367 1 4 667 1473 183 49 21 chr11 10809796 10810081 -111033775 - MTC LTR MaLR -23 398 106 4 667 3379 38 2 0 chr11 10810184 10810579 -111033277 - MTA_Mm LTR MaLR 0 396 1 4 667 929 291 172 49 chr11 10810773 10811261 -111032595 + RMER1B Other Other 7 534 -532 4 667 396 0 0 0 chr11 10811261 10811305 -111032551 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 667 405 0 0 0 chr11 10811305 10811349 -111032507 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 667 2785 246 115 20 chr11 10811358 10812938 -111030918 + RMER1A Other Other 1 1018 -12 4 667 879 10 0 0 chr11 10812945 10813045 -111030811 + (GAAA)n Simple_repeat Simple_repeat 3 102 0 4 667 192 97 0 0 chr11 10813045 10813075 -111030781 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 667 624 163 0 0 chr11 10813084 10813213 -111030643 + GA-rich Low_complexity Low_complexity 1 129 0 4 667 1528 51 10 0 chr11 10813302 10813498 -111030358 - L1Md_F2 LINE L1 -283 5600 5403 4 667 7541 64 1 13 chr11 10813498 10814489 -111029367 + L1Md_F2 LINE L1 5601 6579 -3 4 667 491 332 47 32 chr11 10814639 10814829 -111029027 - B3A SINE B2 0 198 6 4 667 2253 175 24 31 chr11 10815027 10815526 -111028330 + ORR1C1-int LTR MaLR 944 1368 -141 4 667 2289 181 43 45 chr11 10815531 10816023 -111027833 - RLTR19 LTR ERVK 0 499 9 4 667 649 118 150 8 chr11 10816051 10816171 -111027685 + ORR1C1-int LTR MaLR 1233 1369 -1 4 667 1472 187 112 29 chr11 10816174 10816521 -111027335 + ORR1C1 LTR MaLR 3 378 0 4 667 845 262 56 95 chr11 10817160 10817794 -111026062 - MTD-int LTR MaLR -405 965 1 4 667 806 277 269 9 chr11 10817799 10818127 -111025729 - MTD LTR MaLR -5 414 1 4 667 5209 70 8 1 chr11 10818420 10819358 -111024498 + L1_Mus1 LINE L1 5352 6294 -273 4 667 522 0 0 0 chr11 10819370 10819428 -111024428 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 4 667 988 81 17 39 chr11 10819429 10819609 -111024247 + (GAAAA)n Simple_repeat Simple_repeat 3 178 0 4 667 3287 137 16 37 chr11 10819696 10820252 -111023604 + RLTR31B_Mm LTR ERVK 1 539 -18 4 667 319 23 0 0 chr11 10820252 10820295 -111023561 - L1Md_T LINE L1 -12 6570 6528 4 667 3287 137 16 37 chr11 10820295 10820307 -111023549 + RLTR31B_Mm LTR ERVK 540 555 -2 4 667 195 238 76 16 chr11 10820847 10820911 -111022945 - MIR SINE MIR -20 248 177 4 667 24 53 0 0 chr11 10820946 10820984 -111022872 + AT_rich Low_complexity Low_complexity 1 38 0 4 667 466 338 28 28 chr11 10821267 10821490 -111022366 + B4A SINE B4 2 233 -59 4 667 201 250 0 0 chr11 10821552 10821612 -111022244 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 667 203 0 0 36 chr11 10821614 10821642 -111022214 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 667 316 303 0 0 chr11 10821642 10821718 -111022138 + ID_B1 SINE B4 145 220 -4 4 667 246 211 54 32 chr11 10822172 10822265 -111021591 + (TATATG)n Simple_repeat Simple_repeat 6 100 0 4 667 320 318 135 0 chr11 10823065 10823191 -111020665 - HAL1-3A_ME LINE L1 -431 2427 2285 4 667 625 190 0 19 chr11 10823193 10823354 -111020502 + C-rich Low_complexity Low_complexity 2 159 0 4 667 357 165 0 0 chr11 10823365 10823462 -111020394 + C-rich Low_complexity Low_complexity 1 97 0 4 667 1125 0 0 0 chr11 10823464 10823589 -111020267 + (TCTCCC)n Simple_repeat Simple_repeat 5 129 0 4 667 862 260 51 89 chr11 10823988 10824359 -111019497 + ORR1E LTR MaLR 3 359 0 4 667 2166 242 71 60 chr11 10824533 10825159 -111018697 - RCHARR1 DNA MER1_type 0 974 315 4 667 593 260 203 17 chr11 10825159 10825460 -111018396 - ORR1E LTR MaLR -2 357 1 4 667 2166 242 71 60 chr11 10825460 10825562 -111018294 - RCHARR1 DNA MER1_type -660 314 238 4 667 716 323 60 24 chr11 10825608 10825944 -111017912 - MLT1B LTR MaLR -31 359 12 4 667 1710 239 56 48 chr11 10826657 10827049 -111016807 + MTD LTR MaLR 17 411 -8 4 667 3692 260 105 35 chr11 10827053 10828224 -111015632 + MTD-int LTR MaLR 1 1253 -5 4 667 420 182 93 0 chr11 10828229 10828325 -111015531 + MTD LTR MaLR 1 104 -317 4 667 1529 228 35 153 chr11 10828853 10829455 -111014401 + MT2A LTR ERVL 3 533 0 4 667 1283 244 87 69 chr11 10829630 10830149 -111013707 - RLTR11A LTR ERVK 0 528 1 4 667 258 135 19 0 chr11 10830420 10830472 -111013384 + L1M4b LINE L1 1469 1521 -5813 4 667 1681 232 59 41 chr11 10830587 10830909 -111012947 + L1_Mur3 LINE L1 1244 1572 -4308 4 667 1045 60 8 8 chr11 10830909 10831043 -111012813 + B1_Mm SINE Alu 1 134 -13 4 667 242 29 29 0 chr11 10831043 10831078 -111012778 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 667 1681 232 59 41 chr11 10831078 10831365 -111012491 + L1_Mur3 LINE L1 1573 1864 -4016 4 667 461 284 64 11 chr11 10831717 10831984 -111011872 + L1_Mur3 LINE L1 1861 2141 -3739 4 667 2731 207 84 137 chr11 10831998 10832703 -111011153 + L1_Mur3 LINE L1 3152 3736 -2144 4 667 2026 177 16 16 chr11 10832703 10833081 -111010775 - ORR1C1 LTR MaLR 0 378 1 4 667 2731 207 84 137 chr11 10833081 10833708 -111010148 + L1_Mur3 LINE L1 3737 4413 -1467 4 667 33367 79 3 5 chr11 10833715 10839770 -111004086 + L1Md_F2 LINE L1 218 6483 -99 4 667 3862 270 70 19 chr11 10839772 10841622 -111002234 + Lx7 LINE L1 5368 7303 -393 4 667 753 215 5 20 chr11 10841875 10842084 -111001772 + MTD LTR MaLR 117 421 0 4 667 300 53 0 0 chr11 10842089 10842127 -111001729 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 667 2263 87 20 25 chr11 10842129 10842529 -111001327 + MusHAL1 LINE L1 100 497 -2215 4 667 21 36 0 0 chr11 10844355 10844383 -110999473 + AT_rich Low_complexity Low_complexity 1 28 0 4 667 232 305 169 7 chr11 10844435 10844577 -110999279 + MIRb SINE MIR 20 184 -84 4 667 784 316 9 9 chr11 10845657 10845868 -110997988 + B4A SINE B4 11 221 -71 4 667 476 312 130 58 chr11 10845894 10846170 -110997686 + MLT1A LTR MaLR 31 326 -48 4 667 200 222 16 16 chr11 10846737 10846801 -110997055 + GA-rich Low_complexity Low_complexity 3 66 0 4 667 203 133 22 0 chr11 10847175 10847220 -110996636 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 4 667 822 60 0 0 chr11 10849725 10849842 -110994014 + (TC)n Simple_repeat Simple_repeat 2 118 0 4 667 516 16 0 0 chr11 10849842 10849902 -110993954 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 667 21 0 0 0 chr11 10850237 10850258 -110993598 + GC_rich Low_complexity Low_complexity 1 21 0 4 667 359 266 80 47 chr11 10851060 10851273 -110992583 - L1MC1 LINE L1 -129 6215 5996 4 667 457 260 200 7 chr11 10851315 10851590 -110992266 - L1MC1 LINE L1 -452 5881 5554 4 667 242 263 91 13 chr11 10851900 10851977 -110991879 - ID2 SINE ID 0 83 1 4 667 419 271 59 44 chr11 10852182 10852317 -110991539 - B1F SINE Alu -1 148 12 4 667 349 217 162 13 chr11 10852328 10852482 -110991374 - L1MC1 LINE L1 -948 5198 5022 4 667 1527 22 0 0 chr11 10852507 10852686 -110991170 + (CTTG)n Simple_repeat Simple_repeat 1 179 0 4 667 2418 105 8 45 chr11 10853197 10853526 -110990330 - MERVL-int LTR ERVL -5100 385 62 4 667 1140 48 7 0 chr11 10853526 10853672 -110990184 - B1_Mus2 SINE Alu 0 147 1 4 667 2418 105 8 45 chr11 10853672 10853742 -110990114 - MERVL-int LTR ERVL -5424 61 1 4 667 3705 62 15 2 chr11 10853742 10854211 -110989645 - MT2C_Mm LTR ERVL 0 475 1 4 667 302 0 0 0 chr11 10854211 10854249 -110989607 - MERVL-int LTR ERVL 0 5485 5448 4 667 334 178 13 40 chr11 10854249 10854325 -110989531 - ORR1A3-int LTR MaLR -1323 640 567 4 667 1970 98 147 8 chr11 10854330 10854691 -110989165 - MERVL_2A-int LTR ERVL -138 5623 5213 4 667 29 60 0 0 chr11 10855776 10855826 -110988030 + AT_rich Low_complexity Low_complexity 1 50 0 4 667 395 349 47 5 chr11 10856319 10856509 -110987347 + Tigger6a DNA MER2_type 30 227 -856 4 667 358 332 122 54 chr11 10856683 10856887 -110986969 - MER76 LTR ERVL -199 492 275 4 667 731 283 44 133 chr11 10856903 10857310 -110986546 - ORR1D1 LTR MaLR 0 374 4 4 667 243 0 0 0 chr11 10857506 10857533 -110986323 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 4 667 425 308 63 93 chr11 10857656 10857989 -110985867 + ORR1E LTR MaLR 3 325 -34 4 667 834 300 114 101 chr11 10858014 10858311 -110985545 + Tigger6a DNA MER2_type 345 654 -429 4 667 1881 29 86 8 chr11 10858311 10858554 -110985302 + L1_Mus1 LINE L1 6306 6567 0 4 667 834 300 114 101 chr11 10858554 10858986 -110984870 + Tigger6a DNA MER2_type 655 1083 0 4 667 512 232 65 7 chr11 10859454 10859593 -110984263 + HAL1-2a_MD LINE L1 2345 2491 -533 4 667 436 327 0 0 chr11 10859595 10859696 -110984160 - PB1D10 SINE Alu -15 102 2 4 667 296 245 57 90 chr11 10860130 10860279 -110983577 - MIR SINE MIR -102 166 23 4 667 23 33 0 0 chr11 10861553 10861583 -110982273 + AT_rich Low_complexity Low_complexity 1 30 0 4 667 3743 152 68 43 chr11 10861883 10862502 -110981354 - RMER6A LTR ERVK 0 756 99 4 667 204 40 0 0 chr11 10862502 10862527 -110981329 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 667 3743 152 68 43 chr11 10862527 10862645 -110981211 - RMER6A LTR ERVK -658 98 1 4 667 1197 48 0 13 chr11 10864194 10864343 -110979513 - B1_Mus2 SINE Alu 0 147 1 5 667 21 36 0 0 chr11 10864609 10864637 -110979219 + AT_rich Low_complexity Low_complexity 1 28 0 5 667 293 324 23 50 chr11 10864683 10864901 -110978955 - L1MA4A LINE L1 -386 5917 5706 5 667 185 316 38 38 chr11 10864902 10864981 -110978875 - MIR SINE MIR -73 189 111 5 667 198 364 143 35 chr11 10865850 10866109 -110977747 - L2c LINE L2 -180 3207 2921 5 667 405 39 0 0 chr11 10866751 10866802 -110977054 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 667 964 328 90 19 chr11 10866960 10867427 -110976429 - Lx9 LINE L1 -788 6856 6357 5 667 202 222 63 0 chr11 10867451 10867514 -110976342 + (CAGAGA)n Simple_repeat Simple_repeat 4 70 0 5 667 250 282 25 25 chr11 10867665 10867785 -110976071 - Lx9 LINE L1 -1622 6022 5903 5 667 6127 67 21 22 chr11 10867845 10868668 -110975188 - RLTR13B2 LTR ERVK 0 822 1 5 667 387 222 23 1 chr11 10868763 10868880 -110974976 - Lx9 LINE L1 -1635 5838 5684 5 667 274 246 0 14 chr11 10868944 10869018 -110974838 - Lx9 LINE L1 -648 6996 6924 5 667 1862 263 90 31 chr11 10869048 10869926 -110973930 - Lx9 LINE L1 -181 5666 4737 5 667 1060 331 57 14 chr11 10869924 10870482 -110973374 + Lx9 LINE L1 6839 7420 -224 5 667 327 119 45 0 chr11 10870627 10870684 -110973172 + Lx3A LINE L1 6912 6971 -10 5 667 198 0 0 0 chr11 10870684 10870706 -110973150 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 5 667 216 264 118 0 chr11 10871338 10871398 -110972458 - L2c LINE L2 -70 3317 3238 5 667 23 0 0 0 chr11 10871514 10871537 -110972319 + AT_rich Low_complexity Low_complexity 1 23 0 5 667 843 105 0 0 chr11 10872532 10872656 -110971200 + (TC)n Simple_repeat Simple_repeat 1 124 0 5 667 231 310 132 9 chr11 10874430 10874544 -110969312 + MER54B LTR ERVL 642 769 -132 5 667 349 291 167 29 chr11 10874511 10874649 -110969207 + MER54B LTR ERVL 637 793 0 5 667 299 338 92 7 chr11 10874751 10874903 -110968953 + MLT1D LTR MaLR 288 452 -53 5 667 1117 189 151 8 chr11 10875004 10875382 -110968474 - RMER4B LTR ERVK -152 433 2 5 667 226 298 157 0 chr11 10875961 10876082 -110967774 + ORR1E LTR MaLR 114 253 -106 5 667 228 135 0 0 chr11 10876171 10876208 -110967648 + (TATG)n Simple_repeat Simple_repeat 2 38 0 5 667 479 48 24 24 chr11 10876495 10876580 -110967276 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 5 667 22 0 0 0 chr11 10876925 10876947 -110966909 + AT_rich Low_complexity Low_complexity 1 22 0 5 668 23 0 0 0 chr11 10879135 10879158 -110964698 + AT_rich Low_complexity Low_complexity 1 23 0 5 668 624 273 35 111 chr11 10880255 10880453 -110963403 - B3A SINE B2 -10 185 3 5 668 825 289 128 0 chr11 10881359 10881601 -110962255 - ORR1D2 LTR MaLR -14 356 84 5 668 594 28 0 0 chr11 10881761 10881833 -110962023 + (TGGA)n Simple_repeat Simple_repeat 2 73 0 5 668 293 310 187 40 chr11 10881850 10882149 -110961707 - ORR1E LTR MaLR -16 343 1 5 668 192 77 0 0 chr11 10883951 10883977 -110959879 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 5 668 34 24 0 0 chr11 10883981 10884022 -110959834 + AT_rich Low_complexity Low_complexity 1 41 0 5 668 203 295 0 0 chr11 10884165 10884226 -110959630 + CT-rich Low_complexity Low_complexity 3 63 0 5 668 369 0 0 0 chr11 10884256 10884297 -110959559 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 668 285 265 13 13 chr11 10884301 10884415 -110959441 - L1MA5 LINE L1 -367 5936 5823 5 668 315 118 14 14 chr11 10884473 10884542 -110959314 - Lx9 LINE L1 -1 7643 7575 5 668 546 320 23 8 chr11 10884612 10884906 -110958950 - L1MA5 LINE L1 -524 5776 5476 5 668 357 109 0 0 chr11 10884915 10884970 -110958886 + (T)n Simple_repeat Simple_repeat 1 55 0 5 668 620 283 137 28 chr11 10885385 10885778 -110958078 - L1MA5 LINE L1 -1098 5045 4610 5 668 3373 83 0 0 chr11 10886692 10887207 -110956649 - L1_Mus2 LINE L1 -510 6056 5541 5 668 724 253 108 50 chr11 10887211 10887676 -110956180 - L1Md_F LINE L1 -5738 781 290 5 668 813 248 14 32 chr11 10887998 10888215 -110955641 + B3 SINE B2 2 214 -2 5 668 264 277 48 30 chr11 10888307 10888385 -110955471 - B1F2 SINE Alu -21 96 17 5 668 480 250 133 15 chr11 10888373 10888637 -110955219 + Charlie1a DNA MER1_type 1060 1354 -101 5 668 872 205 116 0 chr11 10888814 10889004 -110954852 + B3 SINE B2 5 216 0 5 668 3642 232 66 2 chr11 10889008 10889876 -110953980 + Lx6 LINE L1 6487 7409 -51 5 668 2605 124 104 5 chr11 10889899 10890330 -110953526 - Lx LINE L1 -6 6648 6175 5 668 3412 101 11 1 chr11 10890330 10890849 -110953007 + Lx LINE L1 5657 6526 -474 5 668 375 252 53 61 chr11 10891704 10891818 -110952038 + B3 SINE B2 1 113 -103 5 668 459 315 25 78 chr11 10892857 10893040 -110950816 - B3A SINE B2 -17 176 1 5 668 234 0 0 0 chr11 10893133 10893159 -110950697 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 668 349 315 52 37 chr11 10893658 10893849 -110950007 + L1ME4a LINE L1 5886 6079 -45 5 668 28 0 0 0 chr11 10893877 10893905 -110949951 + AT_rich Low_complexity Low_complexity 1 28 0 5 668 25 0 0 0 chr11 10893923 10893948 -110949908 + AT_rich Low_complexity Low_complexity 1 25 0 5 668 243 136 62 18 chr11 10894519 10894631 -110949225 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 5 668 341 106 0 0 chr11 10894841 10894888 -110948968 - HAL1-3A_ME LINE L1 -836 2022 1976 5 668 243 215 0 0 chr11 10894898 10894963 -110948893 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 668 1855 191 42 6 chr11 10896058 10896411 -110947445 - ORR1B2 LTR MaLR 0 367 2 5 668 435 19 0 0 chr11 10896876 10896928 -110946928 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 668 1586 196 69 10 chr11 10897080 10897472 -110946384 - RLTR9F LTR ERVK 0 415 1 5 668 325 155 41 27 chr11 10897473 10897546 -110946310 - ETnERV2-int LTR ERVK -2 7404 7331 5 668 279 0 0 0 chr11 10897629 10897660 -110946196 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 668 12984 138 21 28 chr11 10897790 10899975 -110943881 - ETnERV2-int LTR ERVK -981 6425 4255 5 668 180 242 62 46 chr11 10899975 10900040 -110943816 + L4 LINE RTE 733 798 -1231 5 668 631 144 19 0 chr11 10900040 10900144 -110943712 - ETnERV2-int LTR ERVK -3218 4188 4083 5 668 550 232 50 84 chr11 10900136 10900315 -110943541 - ETnERV2-int LTR ERVK -2858 3309 3137 5 668 694 225 0 0 chr11 10900294 10900436 -110943420 - ETnERV-int LTR ERVK -2845 469 328 5 668 507 212 38 71 chr11 10900496 10900679 -110943177 - ETnERV-int LTR ERVK -3135 179 3 5 668 1472 172 108 44 chr11 10900681 10901071 -110942785 - RLTR9F LTR ERVK 0 415 1 5 668 473 231 30 142 chr11 10901368 10901635 -110942221 + L1MA8 LINE L1 5730 5966 -325 5 668 357 24 0 0 chr11 10901806 10901848 -110942008 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 668 295 241 22 188 chr11 10902323 10902461 -110941395 + RMER15 LTR ERVL 4 118 -457 5 668 566 289 120 19 chr11 10902522 10902730 -110941126 + RMER15 LTR ERVL 303 531 -44 5 668 323 254 115 7 chr11 10904538 10904677 -110939179 + L1MA8 LINE L1 6103 6256 -44 5 668 256 351 15 22 chr11 10905420 10905554 -110938302 + MIRb SINE MIR 117 249 -19 5 668 429 20 0 0 chr11 10906387 10906437 -110937419 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 668 5043 174 57 17 chr11 10906439 10907545 -110936311 + Lx7 LINE L1 4641 5790 -90 5 668 431 78 16 0 chr11 10907554 10907618 -110936238 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 668 4226 239 51 2 chr11 10907627 10908692 -110935164 + Lx7 LINE L1 5781 6897 -799 5 668 297 0 0 0 chr11 10908693 10908726 -110935130 + (TAA)n Simple_repeat Simple_repeat 1 33 0 5 668 289 164 60 0 chr11 10908739 10908806 -110935050 + L1_Mus3 LINE L1 5730 5800 -838 5 668 369 190 0 0 chr11 10908801 10908880 -110934976 + Lx6 LINE L1 6673 6751 -709 5 668 1020 270 39 59 chr11 10908923 10909332 -110934524 + Lx6 LINE L1 5803 6203 -1257 5 668 1102 224 15 19 chr11 10909345 10909609 -110934247 + Lx6 LINE L1 6531 6793 -667 5 668 246 284 0 0 chr11 10909603 10909677 -110934179 + Lx6 LINE L1 7207 7280 -180 5 668 194 0 0 37 chr11 10909709 10909736 -110934120 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 668 378 0 0 0 chr11 10910027 10910069 -110933787 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 5 668 1093 95 0 0 chr11 10910088 10910235 -110933621 + B1_Mus2 SINE Alu 1 147 0 5 668 306 0 0 0 chr11 10910238 10910272 -110933584 + (A)n Simple_repeat Simple_repeat 1 34 0 5 668 2604 107 5 5 chr11 10910615 10911020 -110932836 - L1_Mus3 LINE L1 -30 6608 6204 5 668 1963 50 4 0 chr11 10910999 10911259 -110932597 - L1_Mus3 LINE L1 -761 5875 5615 5 668 354 327 56 56 chr11 10912422 10912600 -110931256 + RMER15 LTR ERVL 380 557 -18 5 668 180 191 127 42 chr11 10913440 10913511 -110930345 + MIRc SINE MIR 25 101 -167 5 668 180 372 21 31 chr11 10914315 10914412 -110929444 + MIR SINE MIR 33 128 -134 5 668 264 77 0 0 chr11 10915018 10915057 -110928799 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 668 402 21 0 0 chr11 10915057 10915103 -110928753 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 668 777 288 111 69 chr11 10916420 10916782 -110927074 + MTEa LTR MaLR 1 377 -2 5 668 21 0 0 0 chr11 10916969 10916990 -110926866 + AT_rich Low_complexity Low_complexity 1 21 0 5 668 531 259 74 14 chr11 10916990 10917297 -110926559 + L1M4 LINE L1 5223 5541 -633 5 668 2611 74 6 3 chr11 10917319 10917672 -110926184 + L1_Mus4 LINE L1 6283 6636 0 5 668 505 243 122 56 chr11 10918148 10918344 -110925512 - ORR1E LTR MaLR -25 334 126 5 668 626 0 14 0 chr11 10919936 10920010 -110923846 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 668 324 48 0 0 chr11 10920661 10920703 -110923153 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 668 525 71 0 0 chr11 10920701 10920771 -110923085 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 5 668 305 256 61 0 chr11 10920771 10920853 -110923003 + L1MEg LINE L1 1883 1969 -4115 5 668 679 306 44 0 chr11 10922174 10922380 -110921476 + B3 SINE B2 2 216 0 5 668 227 376 47 0 chr11 10922752 10922837 -110921019 + ID SINE ID 1 89 -135 5 668 230 382 39 32 chr11 10924876 10925030 -110918826 + LTR33A LTR ERVL 294 448 -72 5 668 235 323 118 90 chr11 10926242 10926497 -110917359 - MLT1A0 LTR MaLR -8 357 96 5 668 212 122 0 47 chr11 10926880 10926923 -110916933 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 668 270 0 0 0 chr11 10926933 10926963 -110916893 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 668 1536 303 92 61 chr11 10927519 10929365 -110914491 - L1MC3 LINE L1 -738 7047 5138 5 668 403 284 88 6 chr11 10930035 10930205 -110913651 - L1MB1 LINE L1 -335 5854 5671 5 668 895 239 105 29 chr11 10930465 10930821 -110913035 - MT2A LTR ERVL 0 601 71 5 668 2181 267 44 15 chr11 10930821 10931429 -110912427 + Lx6 LINE L1 6827 7452 -8 5 668 1726 291 91 37 chr11 10931419 10932126 -110911730 + Lx8 LINE L1 5437 6223 -1250 6 668 1659 135 92 63 chr11 10932126 10932443 -110911413 - ORR1A3 LTR MaLR 0 326 1 6 668 1726 314 95 45 chr11 10932443 10933049 -110910807 + Lx8 LINE L1 6224 6814 -659 6 668 704 271 125 78 chr11 10933049 10933085 -110910771 + ORR1E LTR MaLR 1 36 -334 6 668 3066 61 193 2 chr11 10933085 10933515 -110910341 - RLTR1B LTR ERV1 0 512 1 6 668 704 261 228 55 chr11 10933515 10933797 -110910059 + ORR1E LTR MaLR 37 370 0 6 668 229 245 0 0 chr11 10933799 10933852 -110910004 + Lx8 LINE L1 6812 6864 -609 6 668 3803 123 67 39 chr11 10933881 10934105 -110909751 + RMER17D LTR ERVK 104 332 -557 6 668 1053 99 0 0 chr11 10934105 10934257 -110909599 + (TCCCC)n Simple_repeat Simple_repeat 4 155 0 6 668 3803 123 67 39 chr11 10934257 10934750 -110909106 + RMER17D LTR ERVK 333 841 -48 6 668 227 172 322 0 chr11 10934750 10934837 -110909019 + Lx3B LINE L1 6859 6973 0 6 668 321 303 23 2 chr11 10934810 10934997 -110908859 + L1M3 LINE L1 4419 4632 -1508 6 668 215 29 88 0 chr11 10934997 10935031 -110908825 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 6 668 429 272 67 21 chr11 10935031 10935179 -110908677 - B1_Mur2 SINE Alu 0 149 3 6 668 351 0 0 0 chr11 10935194 10935233 -110908623 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 668 1473 147 148 18 chr11 10935269 10935553 -110908303 + ORR1A4 LTR MaLR 1 321 -8 6 668 521 189 13 83 chr11 10936757 10936913 -110906943 - RLTR19-int LTR ERVK -2394 3743 3599 6 668 3082 71 5 2 chr11 10937773 10938168 -110905688 + MTA_Mm LTR MaLR 1 396 0 6 668 4047 67 77 0 chr11 10939183 10939703 -110904153 - LTRIS2 LTR ERV1 0 564 5 6 668 899 216 31 0 chr11 10939706 10939933 -110903923 - RLTR1B-int LTR ERV1 -42 5021 4788 6 668 754 353 17 10 chr11 10939924 10940336 -110903520 - RLTR1B-int LTR ERV1 -792 4271 3857 6 668 2887 70 40 1 chr11 10940334 10941125 -110902731 - RLTR1B-int LTR ERV1 -1560 3503 2037 6 668 4016 148 77 27 chr11 10941125 10942577 -110901279 - RLTR1B-int LTR ERV1 -3216 1847 760 6 668 1278 168 23 38 chr11 10942568 10942834 -110901022 - RMER16-int LTR ERVK -3962 1444 1183 6 668 36448 42 0 3 chr11 10942836 10949230 -110894626 - L1Md_T LINE L1 0 6585 112 6 668 3107 117 59 2 chr11 10949230 10949718 -110894138 - RMER16-int LTR ERVK -4213 1193 678 6 668 1006 114 62 17 chr11 10949703 10949881 -110893975 - RMER16-int LTR ERVK -5080 326 141 6 668 271 216 25 75 chr11 10950394 10950514 -110893342 - RLTR1B-int LTR ERV1 -3584 114 1 6 668 4176 48 79 0 chr11 10950514 10951033 -110892823 - LTRIS2 LTR ERV1 0 564 5 6 668 216 62 0 0 chr11 10952111 10952120 -110891736 + (T)n Simple_repeat Simple_repeat 1 9 0 6 668 294 50 0 0 chr11 10952120 10952160 -110891696 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 6 668 216 62 0 0 chr11 10952160 10952182 -110891674 + (T)n Simple_repeat Simple_repeat 1 22 0 6 668 2079 210 93 35 chr11 10954508 10955069 -110888787 - RLTR1 LTR ERV1 0 624 1 6 668 4958 106 25 16 chr11 10955602 10956402 -110887454 + RMER17D2 LTR ERVK 1 807 -2 6 668 375 78 0 0 chr11 10957007 10957058 -110886798 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 668 257 315 13 64 chr11 10957592 10957748 -110886108 - MER52-int LTR ERV1 -3186 3905 3758 6 668 483 177 21 10 chr11 10957983 10958080 -110885776 + Lx4B LINE L1 6832 6929 -129 6 668 1973 144 7 3 chr11 10958081 10958387 -110885469 + ORR1A2 LTR MaLR 13 319 -8 6 668 3035 170 85 14 chr11 10958417 10958983 -110884873 - RMER19C LTR ERVK -5 606 1 6 668 281 206 0 14 chr11 10958983 10959057 -110884799 + Lx4B LINE L1 6948 7020 -38 6 668 1712 144 9 132 chr11 10959057 10959497 -110884359 + RMER17C LTR ERVK 1 386 -24 6 668 510 194 0 58 chr11 10959933 10960070 -110883786 - RLTR42-int LTR ERVK -3524 1998 1870 6 668 1100 210 47 12 chr11 10960535 10960790 -110883066 - RLTR42-int LTR ERVK -4154 1368 1105 6 668 397 311 52 62 chr11 10961086 10961394 -110882462 + L1M2 LINE L1 4638 4942 -1201 6 668 3899 63 0 4 chr11 10961445 10961936 -110881920 + L1Md_F2 LINE L1 6091 6579 -3 6 668 696 238 62 167 chr11 10962175 10962655 -110881201 + RLTR23 LTR ERV1 1 430 0 6 668 2302 168 36 93 chr11 10962809 10963388 -110880468 - RMER6A LTR ERVK -77 679 134 6 668 330 212 41 81 chr11 10963789 10963959 -110879897 + L1M2 LINE L1 4871 5062 -1081 6 668 449 229 64 69 chr11 10964005 10964251 -110879605 + RMER19C LTR ERVK 1 280 -331 6 668 1148 88 0 0 chr11 10964278 10964425 -110879431 - B1_Mus1 SINE Alu -1 147 1 6 668 1464 262 17 86 chr11 10964481 10964902 -110878954 + RMER19C LTR ERVK 220 611 0 6 668 297 246 78 33 chr11 10964902 10965078 -110878778 + L1M2 LINE L1 5105 5320 -823 6 668 3172 172 90 6 chr11 10965096 10965721 -110878135 - RLTR33 LTR ERVK -1 677 1 6 668 329 265 25 14 chr11 10965904 10966051 -110877805 + L1M2 LINE L1 5289 5462 -418 6 668 1248 168 15 8 chr11 10966045 10966309 -110877547 + Lx6 LINE L1 4330 4595 -1285 6 668 15380 94 2 10 chr11 10966316 10968271 -110875585 - L1_Mus1 LINE L1 0 6567 4633 6 668 3770 32 5 0 chr11 10968271 10968705 -110875151 + RLTR10C LTR ERVK 1 436 0 6 668 15380 117 4 18 chr11 10968705 10969958 -110873898 - L1_Mus1 LINE L1 -1251 4632 3396 6 668 7122 132 25 29 chr11 10969950 10971780 -110872076 - L1_Mus1 LINE L1 -3538 2345 524 6 668 4965 200 29 65 chr11 10971782 10971825 -110872031 + Lx6 LINE L1 4586 4625 -1255 6 668 180 0 0 0 chr11 10971825 10971845 -110872011 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 668 4965 210 36 47 chr11 10971845 10973971 -110869885 + Lx6 LINE L1 4626 6727 -733 6 668 23 33 0 0 chr11 10974220 10974250 -110869606 + AT_rich Low_complexity Low_complexity 1 30 0 6 668 442 322 190 45 chr11 10974415 10974636 -110869220 - MTE2a LTR MaLR -66 313 61 6 668 247 256 75 25 chr11 10974645 10974725 -110869131 - MTE2a LTR MaLR -286 93 10 6 668 4279 195 36 11 chr11 10974975 10976812 -110867044 - Lx5 LINE L1 -39 7011 5011 6 668 225 0 0 0 chr11 10976890 10976915 -110866941 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 668 534 263 52 89 chr11 10976982 10977420 -110866436 + RMER17C LTR ERVK 1 362 -48 6 668 213 125 33 82 chr11 10977462 10977523 -110866333 + T-rich Low_complexity Low_complexity 4 61 0 6 668 8838 169 56 8 chr11 10977527 10978655 -110865201 - Lx5 LINE L1 -1593 4284 3085 6 668 4422 16 0 0 chr11 10978655 10979148 -110864708 - MT2_Mm LTR ERVL 0 493 1 6 668 8838 169 56 8 chr11 10979148 10979930 -110863926 - Lx5 LINE L1 -2793 3084 2283 6 668 241 185 0 53 chr11 10979930 10979987 -110863869 + RMER6B LTR ERVK 408 461 0 6 668 5815 154 122 24 chr11 10980011 10981189 -110862667 + MYSERV6-int LTR ERVK 33 1317 -7642 6 668 216 0 0 0 chr11 10981189 10981213 -110862643 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 6 668 6360 138 91 22 chr11 10981213 10983207 -110860649 + MYSERV6-int LTR ERVK 1318 3458 -5501 6 668 315 102 0 0 chr11 10983203 10983252 -110860604 + MYSERV6-int LTR ERVK 6401 6449 -2510 6 668 573 115 0 0 chr11 10983262 10983349 -110860507 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 668 4882 143 25 19 chr11 10983368 10984289 -110859567 + MYSERV6-int LTR ERVK 6427 7352 -1607 6 668 978 208 25 56 chr11 10984296 10984704 -110859152 - Lx5 LINE L1 -6442 1286 892 6 668 433 314 187 45 chr11 10985247 10985557 -110858299 - ORR1E LTR MaLR -5 354 1 6 668 515 342 97 68 chr11 10986432 10986812 -110857044 + L1ME2 LINE L1 5716 6106 -58 6 668 770 279 52 40 chr11 10986942 10987176 -110856680 + L1M4 LINE L1 4372 4615 -1531 6 668 1044 66 0 0 chr11 10987176 10987313 -110856543 + (GA)n Simple_repeat Simple_repeat 1 137 0 6 668 770 304 78 33 chr11 10987313 10988051 -110855805 + L1M4 LINE L1 4616 5393 -753 6 668 601 259 109 2 chr11 10989443 10989627 -110854229 - B3A SINE B2 -9 207 2 6 668 642 270 19 38 chr11 10989772 10989930 -110853926 - RSINE1 SINE B4 -1 164 10 6 668 309 270 0 13 chr11 10990489 10990564 -110853292 + B4 SINE B4 13 86 -206 6 668 650 235 104 71 chr11 10990577 10990815 -110853041 + B4 SINE B4 69 292 0 6 668 1970 180 29 21 chr11 10990937 10991311 -110852545 + MTB_Mm LTR MaLR 1 377 -30 6 668 29 0 0 0 chr11 10991326 10991355 -110852501 + AT_rich Low_complexity Low_complexity 1 29 0 6 668 841 53 44 0 chr11 10992146 10992260 -110851596 + L1_Mus1 LINE L1 5804 5922 -645 6 668 580 253 6 71 chr11 10992260 10992297 -110851559 + ID_B1 SINE B4 53 215 -9 6 668 1017 78 7 28 chr11 10992297 10992434 -110851422 + B1_Mus2 SINE Alu 6 139 -8 6 668 243 0 0 0 chr11 10992434 10992461 -110851395 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 668 4887 62 5 16 chr11 10992469 10993132 -110850724 + L1_Mus1 LINE L1 5947 6567 0 6 668 2702 233 139 30 chr11 10993219 10993994 -110849862 + RMER13A LTR ERVK 1 860 0 6 668 1622 168 135 19 chr11 10994543 10994913 -110848943 + MTD LTR MaLR 5 417 -2 6 668 198 103 0 0 chr11 10995617 10995646 -110848210 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 668 388 91 30 0 chr11 10996131 10996197 -110847659 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 668 477 0 0 0 chr11 10996760 10996813 -110847043 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 668 529 202 0 31 chr11 10996826 10996923 -110846933 - B1_Mur3 SINE Alu -55 94 1 6 668 305 287 202 0 chr11 10997756 10997885 -110845971 + B3A SINE B2 1 155 -43 6 668 249 83 0 0 chr11 10997896 10997932 -110845924 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 668 1133 241 115 47 chr11 10998415 10998860 -110844996 + RLTR12B LTR ERVK 11 485 -43 6 668 647 223 63 13 chr11 10999052 10999211 -110844645 - MTE2a LTR MaLR -9 370 204 6 668 471 290 135 81 chr11 10999213 10999472 -110844384 - MTE2b LTR MaLR -106 273 1 6 668 817 202 100 82 chr11 10999588 10999858 -110843998 + RLTR20C LTR ERVK 1 275 -259 6 668 495 228 22 52 chr11 10999862 10999996 -110843860 + RLTR20C LTR ERVK 411 540 -38 6 668 314 196 80 45 chr11 11000376 11000488 -110843368 + L1ME2 LINE L1 4471 4586 -1560 1 668 507 291 36 26 chr11 11000851 11001045 -110842811 + B3A SINE B2 2 197 -1 2 668 424 311 124 36 chr11 11001372 11001873 -110841983 + L1ME2 LINE L1 5348 5892 -272 1 668 430 238 43 9 chr11 11003159 11003447 -110840409 + GA-rich Low_complexity Low_complexity 1 297 0 3 668 363 246 61 8 chr11 11003643 11003774 -110840082 + L1MCa LINE L1 900 1037 -5471 4 668 191 61 0 29 chr11 11003788 11003822 -110840034 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 668 214 171 0 0 chr11 11003929 11003970 -110839886 + A-rich Low_complexity Low_complexity 4 44 0 6 668 2639 78 3 6 chr11 11003991 11004341 -110839515 + L1_Mus1 LINE L1 6213 6561 -6 7 668 216 273 0 0 chr11 11004347 11004413 -110839443 + A-rich Low_complexity Low_complexity 1 66 0 8 668 7708 77 9 23 chr11 11004646 11006324 -110837532 + L1_Mus2 LINE L1 4895 6565 -1 9 668 334 225 34 0 chr11 11006429 11006518 -110837338 + L1MCa LINE L1 1620 1711 -4797 4 668 539 298 51 43 chr11 11007346 11007556 -110836300 + B3A SINE B2 2 216 0 1 668 621 284 57 9 chr11 11007597 11007807 -110836049 + MER2 DNA MER2_type 119 338 -7 1 669 230 313 12 24 chr11 11010953 11011038 -110832818 + GA-rich Low_complexity Low_complexity 2 85 0 1 669 2835 234 152 11 chr11 11011156 11011958 -110831898 + MTC-int LTR MaLR 24 938 -320 1 669 3042 57 28 7 chr11 11011958 11012385 -110831471 - RLTR10C LTR ERVK 0 436 1 1 669 961 184 26 173 chr11 11012385 11012668 -110831188 + MTC-int LTR MaLR 933 1167 -91 1 669 528 211 39 72 chr11 11012668 11012821 -110831035 - B1_Mur4 SINE Alu -1 149 2 1 669 961 184 26 173 chr11 11012821 11012919 -110830937 + MTC-int LTR MaLR 1168 1258 0 1 669 933 205 66 9 chr11 11012932 11013144 -110830712 + MTC LTR MaLR 13 236 -185 1 669 22 0 0 0 chr11 11015882 11015904 -110827952 + GC_rich Low_complexity Low_complexity 1 22 0 1 669 196 304 112 35 chr11 11017266 11017409 -110826447 - MIR SINE MIR -93 169 16 1 669 234 196 22 0 chr11 11018604 11018650 -110825206 + CT-rich Low_complexity Low_complexity 3 49 0 1 669 180 0 0 0 chr11 11018651 11018671 -110825185 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 669 482 245 167 53 chr11 11018671 11018917 -110824939 - B4A SINE B4 -16 276 3 2 669 399 345 58 63 chr11 11019985 11020208 -110823648 - MLT1B LTR MaLR -2 388 167 2 669 451 274 34 7 chr11 11020304 11020451 -110823405 - MLT1B LTR MaLR -210 180 30 2 669 389 335 84 15 chr11 11020837 11021098 -110822758 + Charlie19a DNA Charlie 2 280 -106 2 669 590 26 0 13 chr11 11021207 11021284 -110822572 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 669 2675 36 2 233 chr11 11023895 11024402 -110819454 - RLTR10 LTR ERVK 0 390 1 2 669 17441 23 7 3 chr11 11024402 11026366 -110817490 - RLTR10-int LTR ERVK -1 1986 16 2 669 2688 33 2 233 chr11 11026400 11026907 -110816949 - RLTR10 LTR ERVK 0 390 1 2 669 762 283 81 28 chr11 11027468 11027828 -110816028 + MTEa LTR MaLR 1 379 0 2 669 453 122 0 0 chr11 11029869 11029943 -110813913 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 669 240 111 0 0 chr11 11031544 11031580 -110812276 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 669 426 277 0 19 chr11 11034093 11034196 -110809660 - PB1D10 SINE Alu -3 114 14 2 669 211 380 43 11 chr11 11034113 11034206 -110809650 - ID_B1 SINE B4 -48 176 81 2 669 30349 71 6 4 chr11 11034507 11039187 -110804669 - L1Md_F2 LINE L1 0 6582 1887 3 669 390 162 138 0 chr11 11040516 11040596 -110803260 + 5S rRNA rRNA 1 91 -30 3 669 366 23 0 0 chr11 11040872 11040915 -110802941 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 3 669 251 162 43 14 chr11 11041359 11041428 -110802428 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 669 870 89 66 54 chr11 11041450 11041617 -110802239 - B2_Mm2 SINE B2 0 195 27 3 669 39021 42 0 3 chr11 11041626 11048079 -110795777 - L1Md_T LINE L1 0 6585 56 3 669 285 49 0 0 chr11 11048080 11048121 -110795735 - B2_Mm2 SINE B2 -154 41 1 3 669 629 121 101 0 chr11 11048288 11048387 -110795469 - L1_Mus3 LINE L1 -156 6482 6374 3 669 2920 127 96 48 chr11 11048387 11048613 -110795243 - RLTR17 LTR ERVK -103 589 329 3 669 1088 84 0 0 chr11 11048613 11048755 -110795101 - B1_Mus1 SINE Alu -6 142 1 3 669 2920 127 96 48 chr11 11048755 11049090 -110794766 - RLTR17 LTR ERVK -364 328 1 3 669 237 108 0 0 chr11 11049584 11049621 -110794235 + (TCC)n Simple_repeat Simple_repeat 1 37 0 3 669 669 226 45 0 chr11 11049794 11049927 -110793929 + B1_Mur2 SINE Alu 11 149 0 4 669 2591 172 31 23 chr11 11050701 11051219 -110792637 - RLTR11A2 LTR ERVK -2 525 4 4 669 1634 19 14 55 chr11 11051829 11052047 -110791809 + L1Md_F3 LINE L1 6374 6582 -2 4 669 544 111 20 0 chr11 11053232 11053331 -110790525 + (TC)n Simple_repeat Simple_repeat 2 102 0 4 669 210 176 0 0 chr11 11053364 11053415 -110790441 + GA-rich Low_complexity Low_complexity 2 52 0 4 669 189 333 0 0 chr11 11053575 11053626 -110790230 + MIR SINE MIR 94 144 -118 4 669 796 219 90 20 chr11 11055500 11055532 -110788324 - B3 SINE B2 -2 214 177 4 669 324 48 0 0 chr11 11055532 11055574 -110788282 + (TATG)n Simple_repeat Simple_repeat 1 42 0 4 669 796 219 90 20 chr11 11055574 11055741 -110788115 - B3 SINE B2 -40 176 2 4 669 314 286 22 141 chr11 11055774 11056144 -110787712 + Lx9 LINE L1 7317 7642 -2 4 669 457 328 93 16 chr11 11057002 11057185 -110786671 + B3A SINE B2 2 198 0 4 669 1913 149 24 50 chr11 11057499 11057837 -110786019 + ORR1A4 LTR MaLR 1 329 0 5 669 22 0 0 0 chr11 11058523 11058545 -110785311 + AT_rich Low_complexity Low_complexity 1 22 0 5 669 259 316 17 17 chr11 11059349 11059465 -110784391 + PB1D10 SINE Alu 2 117 0 5 669 34 0 0 0 chr11 11059810 11059844 -110784012 + AT_rich Low_complexity Low_complexity 1 34 0 5 669 274 306 52 36 chr11 11060181 11060432 -110783424 + L1M5 LINE L1 4995 5249 -897 5 669 4031 150 64 21 chr11 11060772 11061479 -110782377 - Lx4B LINE L1 0 7058 6322 5 669 4020 123 82 11 chr11 11061480 11062438 -110781418 + Lx4B LINE L1 5292 6335 -723 5 669 664 338 142 33 chr11 11062641 11063558 -110780298 + L1M4 LINE L1 2406 3422 -2724 5 669 286 219 0 68 chr11 11063570 11063658 -110780198 - RLTR24 LTR ERV1 -4 525 444 5 669 1271 103 19 29 chr11 11063640 11063850 -110780006 - RLTR24 LTR ERV1 -293 236 29 5 669 513 277 84 36 chr11 11063885 11064301 -110779555 + L1M4 LINE L1 3503 3938 -2208 5 669 1609 187 13 0 chr11 11064882 11065192 -110778664 - Lx2B LINE L1 -327 6673 6360 5 669 1050 250 109 7 chr11 11065187 11065481 -110778375 + Lx2B LINE L1 6658 6981 -19 5 669 224 324 14 0 chr11 11065904 11065975 -110777881 + PB1D10 SINE Alu 41 112 -5 5 669 359 272 65 86 chr11 11065979 11066269 -110777587 + L1M4 LINE L1 4369 4652 -1494 5 669 474 264 46 73 chr11 11066387 11066538 -110777318 - B1F SINE Alu -1 148 2 6 669 258 81 0 0 chr11 11066604 11066641 -110777215 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 6 669 354 326 105 75 chr11 11066760 11067065 -110776791 + L1M4 LINE L1 4771 5084 -1062 5 669 324 277 112 25 chr11 11067087 11067615 -110776241 + L1M4 LINE L1 5139 5714 -450 5 669 364 270 11 0 chr11 11067637 11067726 -110776130 - ID_B1 SINE B4 -53 171 82 6 669 262 275 36 9 chr11 11067744 11067854 -110776002 + L1M4 LINE L1 5734 5846 -332 5 669 1078 237 164 17 chr11 11068051 11068343 -110775513 - ORR1E LTR MaLR -14 345 11 6 669 368 178 0 118 chr11 11068547 11068649 -110775207 - MER57D LTR ERV1 -22 389 300 6 669 251 339 29 86 chr11 11069083 11069222 -110774634 - MER5A DNA MER1_type -58 131 1 6 669 24 0 0 0 chr11 11069655 11069679 -110774177 + AT_rich Low_complexity Low_complexity 1 24 0 6 669 5665 58 14 1 chr11 11070097 11070817 -110773039 + L1_Mus1 LINE L1 5839 6567 0 6 669 405 0 0 0 chr11 11071387 11071432 -110772424 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 669 213 300 12 24 chr11 11071480 11071562 -110772294 - L2c LINE L2 -49 3338 3258 6 669 579 244 75 52 chr11 11072217 11072390 -110771466 + MTD LTR MaLR 1 177 -242 7 669 385 254 106 128 chr11 11072385 11072532 -110771324 - RMER21A LTR ERV1 -265 682 527 7 669 3986 224 46 31 chr11 11072532 11073423 -110770433 - RMER13B LTR ERVK 0 908 5 7 669 385 262 101 130 chr11 11073423 11073542 -110770314 - RMER21A LTR ERV1 -421 526 312 7 669 402 21 0 0 chr11 11073669 11073716 -110770140 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 669 813 330 49 28 chr11 11073800 11074124 -110769732 - MT2A LTR ERVL -103 430 100 7 669 223 277 0 30 chr11 11074388 11074455 -110769401 + MIR SINE MIR 131 195 -67 7 669 714 313 127 26 chr11 11076334 11076642 -110767214 - MER34A1 LTR ERV1 -190 397 59 7 669 1138 81 0 13 chr11 11077141 11077291 -110766565 - B1_Mus1 SINE Alu 0 148 1 7 669 262 270 229 18 chr11 11077789 11077955 -110765901 - MER2 DNA MER2_type 0 345 145 7 669 393 218 22 44 chr11 11078005 11078096 -110765760 - ID_B1 SINE B4 -4 220 132 7 669 437 248 16 47 chr11 11078154 11078281 -110765575 - ORR1D1 LTR MaLR 0 374 252 8 669 559 143 0 0 chr11 11078282 11078366 -110765490 - ORR1D1 LTR MaLR -289 85 2 8 669 5256 182 14 137 chr11 11078463 11080189 -110763667 - L1_Mm LINE L1 -27 5856 4342 8 669 332 24 0 0 chr11 11080189 11080231 -110763625 + RLTR10B2 LTR ERVK 1 42 -250 8 669 2101 66 85 40 chr11 11080257 11080586 -110763270 + RLTR10B2 LTR ERVK 22 365 0 8 669 5650 139 53 22 chr11 11080586 11081407 -110762449 - L1_Mur2 LINE L1 -1536 4341 3477 8 669 189 0 0 0 chr11 11081407 11081428 -110762428 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 669 2021 75 91 3 chr11 11081434 11081741 -110762115 - Lx LINE L1 -7 6647 6314 8 669 5650 139 53 22 chr11 11081741 11082019 -110761837 - L1_Mur2 LINE L1 -2401 3476 3200 8 669 400 328 85 30 chr11 11082034 11082304 -110761552 + BLACKJACK DNA AcHobo 1316 1600 -1344 8 669 296 255 31 0 chr11 11082350 11082448 -110761408 + (TA)n Simple_repeat Simple_repeat 1 101 0 8 669 246 276 50 50 chr11 11082536 11082677 -110761179 + BLACKJACK DNA AcHobo 1809 1949 -995 8 669 400 355 42 5 chr11 11082970 11083182 -110760674 - L1M4b LINE L1 -624 6595 6376 8 669 268 306 231 0 chr11 11083199 11083333 -110760523 - MER74C LTR ERVL 0 460 296 8 669 339 328 151 10 chr11 11083591 11083797 -110760059 - L1M5 LINE L1 -655 5518 5284 9 669 726 109 0 0 chr11 11083823 11083951 -110759905 + (TC)n Simple_repeat Simple_repeat 1 128 0 9 669 195 42 0 0 chr11 11083951 11083975 -110759881 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 669 255 314 141 19 chr11 11083978 11084390 -110759466 - L1M5 LINE L1 -918 5228 4767 9 669 304 264 53 35 chr11 11084454 11084568 -110759288 - L1MC LINE L1 -1479 4667 4552 9 669 1288 252 110 15 chr11 11084569 11084946 -110758910 - MTD LTR MaLR 0 419 1 9 669 297 268 0 0 chr11 11084947 11085039 -110758817 - L1M4b LINE L1 -1592 5414 5323 8 669 683 268 25 50 chr11 11085364 11085564 -110758292 - B3A SINE B2 -1 197 3 9 669 218 213 0 0 chr11 11085622 11085669 -110758187 + T-rich Low_complexity Low_complexity 2 48 0 9 669 2943 109 9 5 chr11 11085694 11086136 -110757720 - L1_Mus4 LINE L1 -2 6634 6191 9 669 2467 65 38 142 chr11 11086136 11086214 -110757642 + L1_Mus4 LINE L1 5681 5760 -876 9 669 306 254 0 0 chr11 11086214 11086277 -110757579 - B4 SINE B4 -158 134 72 9 669 2467 65 38 142 chr11 11086277 11086611 -110757245 + L1_Mus4 LINE L1 5761 6106 -530 9 669 304 368 60 32 chr11 11086735 11086985 -110756871 - L1M4b LINE L1 -5792 1542 1286 8 669 791 327 0 0 chr11 11087327 11087532 -110756324 + B4 SINE B4 2 206 -86 9 669 23 0 0 0 chr11 11087609 11087632 -110756224 + AT_rich Low_complexity Low_complexity 1 23 0 1 669 304 250 136 51 chr11 11087828 11087957 -110755899 + B2_Mm2 SINE B2 1 143 -52 1 669 453 66 0 0 chr11 11087957 11088018 -110755838 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 669 304 250 136 51 chr11 11088018 11088065 -110755791 + B2_Mm2 SINE B2 144 192 -3 1 669 5857 84 11 8 chr11 11089119 11090474 -110753382 + L1VL4 LINE L1 420 1778 -1781 1 669 6613 127 30 18 chr11 11090459 11090769 -110753087 + Lx2 LINE L1 5441 5767 -116 1 669 2100 206 89 31 chr11 11090769 11091321 -110752535 - RLTR31A_Mm LTR ERVK 0 584 1 1 669 6613 107 23 19 chr11 11091321 11092209 -110751647 + Lx2 LINE L1 5768 6646 -351 1 669 1203 153 4 31 chr11 11092206 11092435 -110751421 + Lx2 LINE L1 6775 6997 0 1 669 353 152 0 17 chr11 11092637 11092697 -110751159 - HAL1-3A_ME LINE L1 -824 2034 1976 1 669 270 0 0 0 chr11 11092697 11092727 -110751129 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 669 845 297 39 32 chr11 11092751 11093033 -110750823 - B4 SINE B4 -6 286 3 1 669 467 282 85 15 chr11 11093717 11093976 -110749880 + L1ME3 LINE L1 5692 5968 -194 1 669 207 0 0 0 chr11 11094072 11094095 -110749761 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 669 1032 221 14 5 chr11 11094178 11094387 -110749469 + B3 SINE B2 1 211 -5 1 669 734 278 60 37 chr11 11094436 11094653 -110749203 - B4A SINE B4 -68 224 3 1 669 300 280 73 27 chr11 11094658 11094768 -110749088 - L1M5 LINE L1 -617 5562 5448 1 669 803 348 70 31 chr11 11094850 11095304 -110748552 + MER74A LTR ERVL 57 528 -30 1 669 21 0 0 0 chr11 11095314 11095335 -110748521 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 3547 150 23 54 chr11 11096594 11097257 -110746599 - RLTR26 LTR ERVK 0 642 1 1 669 496 323 37 16 chr11 11097834 11098023 -110745833 + MER2 DNA MER2_type 150 342 -3 1 669 243 241 0 17 chr11 11098735 11098794 -110745062 + B2_Mm2 SINE B2 2 59 -136 1 669 535 274 44 33 chr11 11099064 11099245 -110744611 - MER92B LTR ERV1 -395 241 59 1 669 301 259 71 6 chr11 11099556 11099655 -110744201 - B1F2 SINE Alu -17 132 25 1 669 275 360 74 19 chr11 11099936 11100151 -110743705 - L2 LINE L2 -835 2584 2358 1 669 23 0 0 0 chr11 11102572 11102595 -110741261 + AT_rich Low_complexity Low_complexity 1 23 0 1 669 285 309 8 8 chr11 11103950 11104074 -110739782 - L1_Rod LINE L1 -2524 3323 3200 1 669 300 316 41 0 chr11 11104241 11104339 -110739517 - Lx8 LINE L1 -169 7304 7203 1 669 2294 286 77 33 chr11 11104403 11105424 -110738432 + Lx8 LINE L1 6067 7132 -341 1 669 24 0 0 0 chr11 11105438 11105462 -110738394 + AT_rich Low_complexity Low_complexity 1 24 0 1 669 6212 68 0 1 chr11 11105520 11106354 -110737502 + L1_Mus2 LINE L1 5732 6564 -2 1 669 186 189 0 0 chr11 11106421 11106458 -110737398 + CT-rich Low_complexity Low_complexity 3 39 0 1 669 1251 271 112 34 chr11 11106530 11107246 -110736610 - L1_Mur3 LINE L1 -3143 3003 2197 1 669 260 121 54 21 chr11 11107306 11107399 -110736457 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 669 1458 163 118 68 chr11 11107619 11107974 -110735882 - ORR1C1 LTR MaLR -5 373 1 1 669 802 290 60 24 chr11 11107977 11108524 -110735332 - L1_Mur3 LINE L1 -4066 1814 1248 1 669 363 296 36 26 chr11 11108630 11108824 -110735032 - L1_Rod LINE L1 -6487 685 490 1 669 1430 82 55 0 chr11 11109544 11109763 -110734093 - Lx3_Mus LINE L1 0 7009 6779 1 669 529 200 262 0 chr11 11111532 11111692 -110732164 + B3 SINE B2 1 202 -14 1 669 377 327 0 9 chr11 11111770 11111875 -110731981 - PB1D7 SINE Alu -1 119 16 1 669 387 285 87 7 chr11 11112129 11112267 -110731589 - B1F1 SINE Alu 0 149 1 1 669 2881 86 5 24 chr11 11113863 11114282 -110729574 - Lx3_Mus LINE L1 0 7009 6599 1 669 909 167 38 49 chr11 11115192 11115375 -110728481 + URR1A DNA MER1_type 46 226 0 1 669 1240 170 9 18 chr11 11116382 11116609 -110727247 + URR1B DNA MER1_type 1 225 0 1 669 1659 198 76 25 chr11 11116789 11117146 -110726710 - MTC LTR MaLR -46 375 1 1 669 433 289 211 34 chr11 11117146 11117406 -110726450 - MER74A LTR ERVL -231 327 21 1 669 183 219 121 99 chr11 11117546 11117637 -110726219 - L3 LINE CR1 -3643 846 754 1 669 1121 254 63 13 chr11 11117996 11118299 -110725557 + MER2 DNA MER2_type 10 327 -18 1 669 602 291 56 82 chr11 11118540 11118735 -110725121 + B3A SINE B2 6 195 -3 1 669 217 211 0 0 chr11 11119980 11120018 -110723838 + (CCA)n Simple_repeat Simple_repeat 1 38 0 1 669 258 357 118 35 chr11 11120317 11120520 -110723336 - MLT1C LTR MaLR -20 447 228 1 669 1320 250 45 34 chr11 11120686 11121038 -110722818 + MTEb LTR MaLR 3 358 -21 1 669 1309 229 142 11 chr11 11121164 11121517 -110722339 - MTD LTR MaLR -20 399 1 1 669 651 257 136 48 chr11 11122321 11122620 -110721236 - MT2A LTR ERVL 0 475 128 1 669 3632 79 0 0 chr11 11122620 11123088 -110720768 + L1_Mus1 LINE L1 6099 6566 -1 1 669 651 283 71 97 chr11 11123088 11123218 -110720638 - MT2A LTR ERVL -406 127 3 1 669 399 326 38 13 chr11 11124682 11124918 -110718938 - L1MB4 LINE L1 -2335 4406 4165 1 669 1207 322 80 39 chr11 11124919 11125619 -110718237 + Lx8 LINE L1 6384 7124 -349 1 669 3298 86 32 0 chr11 11125619 11126062 -110717794 + L1_Mus1 LINE L1 6111 6567 0 1 669 1207 322 80 39 chr11 11126062 11126229 -110717627 + Lx8 LINE L1 7125 7286 -187 1 669 180 0 0 0 chr11 11126461 11126481 -110717375 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 669 256 214 71 0 chr11 11126792 11126890 -110716966 - L1MB4 LINE L1 -2919 3828 3724 1 669 291 263 132 0 chr11 11127011 11127087 -110716769 - B1F SINE Alu -63 86 1 1 669 333 265 30 22 chr11 11127087 11127222 -110716634 - L1MB4 LINE L1 -6436 171 36 1 669 21 0 0 0 chr11 11127529 11127550 -110716306 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 633 314 124 25 chr11 11127914 11128270 -110715586 - MLT1H-int LTR MaLR -907 502 112 1 669 374 287 139 0 chr11 11129215 11129344 -110714512 + Tigger5 DNA MER2_type 2259 2405 -1 1 669 696 83 0 0 chr11 11129658 11129754 -110714102 + (GGA)n Simple_repeat Simple_repeat 1 96 0 1 669 315 0 0 0 chr11 11129811 11129846 -110714010 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 669 399 224 33 123 chr11 11130671 11130793 -110713063 + B1F SINE Alu 38 148 -1 1 669 320 255 18 9 chr11 11130964 11131075 -110712781 + L1M5 LINE L1 5652 5763 -399 1 669 3386 81 7 4 chr11 11131383 11131843 -110712013 - L1_Mus3 LINE L1 -6 6632 6172 1 669 503 356 67 75 chr11 11132150 11132687 -110711169 - MT2A LTR ERVL 0 533 1 1 669 1051 280 56 42 chr11 11132851 11133209 -110710647 + MTD LTR MaLR 52 414 -5 1 669 3136 52 7 2 chr11 11133413 11133816 -110710040 - L1Md_F2 LINE L1 -3 6579 6175 1 669 2818 292 65 23 chr11 11133985 11135069 -110708787 - Lx8 LINE L1 -123 7350 6221 1 669 21 0 0 0 chr11 11135101 11135122 -110708734 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 210 236 0 0 chr11 11135382 11135437 -110708419 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 669 435 280 14 52 chr11 11135502 11135713 -110708143 - L1M2 LINE L1 -542 5770 5568 1 669 294 294 158 12 chr11 11135722 11135883 -110707973 - L1M2 LINE L1 -476 5404 5216 1 669 432 55 0 0 chr11 11135883 11135938 -110707918 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 669 294 287 162 14 chr11 11135938 11136189 -110707667 - L1M2 LINE L1 -895 5248 4966 1 669 1043 243 110 12 chr11 11136189 11136534 -110707322 + MTE2a LTR MaLR 1 379 0 1 669 543 263 80 0 chr11 11136542 11136679 -110707177 + MTE2a-int LTR MaLR 10 157 -1423 1 669 443 60 15 0 chr11 11136720 11136787 -110707069 + (CAAAA)n Simple_repeat Simple_repeat 5 72 0 1 669 255 278 10 62 chr11 11136787 11136884 -110706972 + MTE2a-int LTR MaLR 149 263 -1317 1 669 337 338 45 24 chr11 11138694 11138940 -110704916 + L1M5 LINE L1 4903 5153 -993 1 669 476 310 13 33 chr11 11139380 11139530 -110704326 - MLT1A0 LTR MaLR -4 361 215 1 669 225 346 25 0 chr11 11140097 11140178 -110703678 - MLT1A0 LTR MaLR -303 105 23 1 669 495 60 0 0 chr11 11140269 11140336 -110703520 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 669 351 287 113 32 chr11 11140447 11140668 -110703188 - RMER20B LTR ERVK -167 349 109 1 670 201 333 104 0 chr11 11141988 11142084 -110701772 + L2b LINE L2 3240 3345 -30 1 670 283 303 24 32 chr11 11142159 11142285 -110701571 + L1M5 LINE L1 5565 5689 -435 1 670 270 314 18 64 chr11 11142484 11142593 -110701263 + MIRb SINE MIR 69 172 -96 1 670 567 132 33 8 chr11 11143968 11144090 -110699766 + CT-rich Low_complexity Low_complexity 4 128 0 1 670 245 271 58 23 chr11 11144299 11144386 -110699470 + MER58A DNA MER1_type 16 105 -119 1 670 417 39 0 0 chr11 11146399 11146450 -110697406 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 1 670 252 259 15 8 chr11 11146454 11146606 -110697250 + GA-rich Low_complexity Low_complexity 1 153 0 1 670 2704 48 33 3 chr11 11148324 11148660 -110695196 - ORR1A0 LTR MaLR 0 346 1 1 670 309 68 0 0 chr11 11148730 11148774 -110695082 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 1 670 414 273 103 29 chr11 11149091 11149227 -110694629 + B3A SINE B2 53 198 0 1 670 485 331 63 66 chr11 11149233 11149369 -110694487 - MLT1A0 LTR MaLR -28 337 196 1 670 336 24 0 0 chr11 11149369 11149410 -110694446 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 670 485 331 63 66 chr11 11149410 11149606 -110694250 - MLT1A0 LTR MaLR -170 195 6 1 670 21 0 0 0 chr11 11149948 11149969 -110693887 + AT_rich Low_complexity Low_complexity 1 21 0 1 670 22 56 0 0 chr11 11150243 11150279 -110693577 + AT_rich Low_complexity Low_complexity 1 36 0 1 670 1623 264 64 18 chr11 11150396 11150962 -110692894 - Lx9 LINE L1 -594 7050 6459 1 670 441 0 0 0 chr11 11151022 11151071 -110692785 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 670 472 241 17 0 chr11 11151122 11151238 -110692618 + Lx9 LINE L1 7057 7174 -470 1 670 306 228 176 95 chr11 11151236 11151532 -110692324 + Lx9 LINE L1 7325 7644 0 1 670 213 39 0 0 chr11 11151596 11151622 -110692234 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 670 959 283 26 13 chr11 11151726 11152034 -110691822 - Lx7 LINE L1 -462 7234 6923 1 670 546 243 137 4 chr11 11152027 11152304 -110691552 - L1MCa LINE L1 -4108 2400 2087 1 670 616 306 77 34 chr11 11152308 11152920 -110690936 + L1MC LINE L1 2399 3036 -3110 1 670 1045 155 40 0 chr11 11152953 11153127 -110690729 + B2_Mm2 SINE B2 1 181 -14 1 670 1502 59 16 0 chr11 11153177 11153364 -110690492 + B2_Mm2 SINE B2 1 190 -5 1 670 308 272 108 31 chr11 11153366 11153495 -110690361 + L1MD LINE L1 4912 5050 -1096 2 670 703 294 5 9 chr11 11153976 11154192 -110689664 - Lx8 LINE L1 -1038 6435 6221 2 670 2214 280 133 16 chr11 11154219 11154399 -110689457 + Lx8 LINE L1 6464 6688 -785 2 670 462 36 0 0 chr11 11154399 11154455 -110689401 + (TAA)n Simple_repeat Simple_repeat 3 58 0 2 670 2214 280 133 16 chr11 11154455 11155176 -110688680 + Lx8 LINE L1 6689 7470 -3 2 670 416 224 46 26 chr11 11155254 11155405 -110688451 + L1MD LINE L1 5580 5733 -509 2 670 3110 144 127 2 chr11 11155414 11155948 -110687908 - MT2B LTR ERVL 0 601 1 2 670 7391 164 64 6 chr11 11155949 11157323 -110686533 - MERVL_2A-int LTR ERVL -2 5759 4306 2 670 4756 178 60 78 chr11 11157324 11158467 -110685389 - ORR1A4-int LTR MaLR -828 1135 13 2 670 1297 164 18 9 chr11 11158461 11158688 -110685168 - ORR1A4 LTR MaLR -13 316 88 2 670 282 283 112 46 chr11 11159397 11159549 -110684307 - RSINE1 SINE B4 -2 163 2 2 670 3812 204 58 8 chr11 11159580 11160458 -110683398 - Lx9 LINE L1 -9 7635 6714 2 670 520 234 48 8 chr11 11160495 11160620 -110683236 + Lx9 LINE L1 6489 6618 -1026 2 670 249 270 192 31 chr11 11160857 11160987 -110682869 + MER5A DNA MER1_type 34 184 -5 2 670 28 0 0 0 chr11 11164372 11164400 -110679456 + AT_rich Low_complexity Low_complexity 1 28 0 2 670 252 279 0 47 chr11 11165917 11165981 -110677875 + ID4 SINE ID 16 76 -7 2 670 24 32 0 0 chr11 11167161 11167192 -110676664 + AT_rich Low_complexity Low_complexity 1 31 0 2 670 321 303 45 96 chr11 11167980 11168137 -110675719 - ORR1E LTR MaLR -204 155 7 2 670 54 49 0 0 chr11 11168146 11168228 -110675628 + AT_rich Low_complexity Low_complexity 1 82 0 2 670 435 306 0 55 chr11 11170529 11170657 -110673199 + ID_B1 SINE B4 84 204 -20 2 670 432 0 0 0 chr11 11170659 11170707 -110673149 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 670 279 0 0 0 chr11 11170707 11170738 -110673118 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2 670 783 278 14 19 chr11 11172003 11172216 -110671640 - B3 SINE B2 -4 212 1 2 670 342 328 22 66 chr11 11172253 11172390 -110671466 - RSINE1 SINE B4 -32 133 3 2 670 689 299 148 35 chr11 11173250 11173710 -110670146 + Tigger5 DNA MER2_type 617 1128 -1278 2 670 455 294 80 7 chr11 11173705 11173842 -110670014 - B1F SINE Alu 0 149 3 2 670 1037 293 49 23 chr11 11173900 11174059 -110669797 + MTEb LTR MaLR 21 177 -202 2 670 207 0 0 0 chr11 11174059 11174082 -110669774 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 670 1037 293 49 23 chr11 11174082 11174271 -110669585 + MTEb LTR MaLR 178 378 -1 2 670 1302 261 78 6 chr11 11174272 11174603 -110669253 + MTEb-int LTR MaLR 1 355 -1225 2 670 450 342 54 14 chr11 11174603 11174751 -110669105 + RSINE1 SINE B4 3 156 -9 2 670 554 60 12 0 chr11 11174754 11174837 -110669019 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 670 558 0 0 0 chr11 11174837 11174898 -110668958 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 670 477 257 29 0 chr11 11174926 11175031 -110668825 + MTEb-int LTR MaLR 346 453 -1127 2 670 863 289 46 4 chr11 11175047 11175287 -110668569 + Lx8 LINE L1 6876 7125 -348 2 670 259 305 167 28 chr11 11175324 11175540 -110668316 + Lx8 LINE L1 7226 7471 -2 2 670 2762 301 101 39 chr11 11175552 11176590 -110667266 + MTEb-int LTR MaLR 478 1580 0 2 670 1291 234 54 35 chr11 11176590 11176962 -110666894 + MTEb LTR MaLR 1 379 0 2 670 268 286 43 0 chr11 11176962 11177032 -110666824 + Tigger5 DNA MER2_type 1154 1226 -1180 2 670 255 254 16 0 chr11 11177077 11177140 -110666716 + RLTR19C LTR ERVK 34 97 -409 2 670 1687 142 80 102 chr11 11177334 11177735 -110666121 + RLTR9C LTR ERVK 2 393 0 2 670 370 251 363 0 chr11 11178117 11178288 -110665568 + Tigger5 DNA MER2_type 1755 1987 -419 2 670 238 282 129 47 chr11 11180993 11181164 -110662692 - MLT1L LTR MaLR -2 608 424 2 670 294 311 37 9 chr11 11181981 11182088 -110661768 - PB1D10 SINE Alu -7 110 1 2 670 333 269 204 0 chr11 11182794 11182887 -110660969 - PB1D10 SINE Alu -2 115 4 2 670 526 266 112 5 chr11 11182901 11183159 -110660697 - L1MB2 LINE L1 0 6180 5881 2 670 23 86 0 0 chr11 11184507 11184565 -110659291 + AT_rich Low_complexity Low_complexity 1 58 0 2 670 2092 112 8 29 chr11 11184831 11185182 -110658674 - Lx3A LINE L1 -782 6199 5856 2 670 4475 123 60 29 chr11 11185183 11185946 -110657910 + Lx3A LINE L1 6186 6972 -9 2 670 219 139 0 0 chr11 11185963 11185999 -110657857 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 2 670 296 349 40 6 chr11 11186005 11186181 -110657675 + L1MB4 LINE L1 45 226 -6381 2 670 246 234 75 45 chr11 11186543 11186677 -110657179 + L1MC LINE L1 5377 5514 -2528 2 670 653 317 75 108 chr11 11186756 11187127 -110656729 - MTEa LTR MaLR -18 361 3 2 670 35384 36 1 0 chr11 11187227 11193503 -110650353 + L1Md_T LINE L1 1 5589 -297 2 670 8993 5 0 0 chr11 11193503 11194531 -110649325 + L1Md_T LINE L1 5590 6585 0 2 670 4868 72 6 0 chr11 11194538 11195333 -110648523 - L1_Mus2 LINE L1 -568 5998 5200 2 670 4133 78 9 31 chr11 11195333 11195915 -110647941 + L1_Mus2 LINE L1 5998 6566 0 2 670 796 270 62 66 chr11 11195979 11196485 -110647371 + L1M3 LINE L1 4343 4849 -1291 2 670 3134 70 2 9 chr11 11196485 11196904 -110646952 + L1_Mus2 LINE L1 6151 6566 0 2 670 796 270 62 66 chr11 11196904 11197064 -110646792 + L1M3 LINE L1 4850 5006 -1134 2 670 880 215 46 23 chr11 11197074 11197379 -110646477 + L1_Mur3 LINE L1 1278 1589 -4291 2 670 6185 189 23 26 chr11 11197385 11198821 -110645035 + L1_Mur3 LINE L1 2199 3630 -2250 2 670 389 209 276 0 chr11 11198837 11198942 -110644914 + L1_Mur3 LINE L1 3757 3890 -1990 2 670 3953 223 87 20 chr11 11198937 11199924 -110643932 + Lx7 LINE L1 6245 7297 -399 2 670 261 194 104 28 chr11 11199985 11200091 -110643765 + Lx7 LINE L1 7562 7675 -21 2 670 1360 276 19 53 chr11 11200296 11200591 -110643265 - Lx8 LINE L1 -784 6689 6407 2 670 2078 141 32 0 chr11 11200591 11200904 -110642952 + ORR1A2 LTR MaLR 3 325 -2 2 670 1360 276 19 53 chr11 11200904 11201025 -110642831 - Lx8 LINE L1 -1067 6406 6287 2 670 1035 290 85 21 chr11 11201077 11201464 -110642392 + Lx8 LINE L1 6931 7342 -131 2 670 319 203 159 22 chr11 11201642 11201786 -110642070 + L1M2 LINE L1 3086 3249 -2894 2 670 609 40 0 0 chr11 11201786 11201862 -110641994 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 670 319 203 159 22 chr11 11201862 11201944 -110641912 + L1M2 LINE L1 3250 3343 -2800 2 670 526 279 54 17 chr11 11201911 11202147 -110641709 + L1M4 LINE L1 3375 3649 -2497 2 670 914 297 81 86 chr11 11202319 11203021 -110640835 - ORR1E-int LTR MaLR -145 1435 615 2 670 5230 118 10 10 chr11 11203038 11203835 -110640021 - L1_Mus4 LINE L1 -5 6631 5835 2 670 337 297 53 18 chr11 11204007 11204120 -110639736 - ORR1E LTR MaLR -242 117 1 2 670 1004 302 29 11 chr11 11204256 11204534 -110639322 + MTE-int LTR MaLR 72 354 -1226 2 670 477 254 59 0 chr11 11204529 11204647 -110639209 + MTE2a LTR MaLR 247 371 -8 2 670 248 246 99 23 chr11 11204865 11205036 -110638820 + L1M4 LINE L1 3838 4021 -2119 2 670 339 282 138 5 chr11 11205040 11205229 -110638627 + L1MC LINE L1 2990 3203 -2943 2 670 7352 86 4 0 chr11 11205446 11207003 -110636853 - L1_Mus2 LINE L1 -3 6563 5000 2 670 17353 123 8 27 chr11 11207007 11210429 -110633427 - L1_Mus2 LINE L1 -1918 3965 598 2 670 1026 188 164 15 chr11 11210439 11210829 -110633027 + L1_Rod LINE L1 2238 2685 -3162 2 670 225 204 0 0 chr11 11210984 11211028 -110632828 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 670 2357 164 99 5 chr11 11211668 11212435 -110631421 + L1VL4 LINE L1 509 1369 -2190 2 670 945 214 209 34 chr11 11213324 11213765 -110630091 + L1MD2 LINE L1 4677 5194 -952 2 670 929 279 161 24 chr11 11213854 11214357 -110629499 + L1MD2 LINE L1 5420 5991 -368 2 670 24 32 0 0 chr11 11214436 11214467 -110629389 + AT_rich Low_complexity Low_complexity 1 31 0 2 670 342 310 198 0 chr11 11214584 11214700 -110629156 + ID_B1 SINE B4 82 220 -4 2 670 185 360 114 6 chr11 11214844 11215020 -110628836 + L2 LINE L2 2321 2515 -904 2 670 354 287 183 13 chr11 11215345 11215645 -110628211 + L1MC4 LINE L1 6460 6810 -1232 2 670 826 231 39 13 chr11 11215646 11215878 -110627978 + L1M4 LINE L1 4806 5043 -1103 2 670 7483 185 241 14 chr11 11215863 11217007 -110626849 + Lx5 LINE L1 1669 3076 -2807 2 670 630 0 0 0 chr11 11217007 11217077 -110626779 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 670 8797 187 133 10 chr11 11217077 11220039 -110623817 + Lx5 LINE L1 3077 6801 -249 2 670 388 229 0 0 chr11 11220045 11220128 -110623728 + Lx9 LINE L1 5123 5205 -642 2 670 10970 103 16 1 chr11 11220185 11221376 -110622480 + L1VL4 LINE L1 88 1285 -2274 2 670 366 42 0 0 chr11 11221376 11221424 -110622432 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 670 10970 82 26 0 chr11 11221424 11222589 -110621267 + L1VL4 LINE L1 1286 2490 -1069 2 670 7061 96 11 5 chr11 11222589 11223600 -110620256 + RLTR13D2 LTR ERVK 1 1017 -6 2 670 7099 62 32 2 chr11 11223600 11224630 -110619226 + L1VL4 LINE L1 2494 3554 -5 2 670 2125 221 31 29 chr11 11224641 11225436 -110618420 + Lx9 LINE L1 5294 6127 -1517 2 670 1887 244 35 8 chr11 11225499 11225978 -110617878 - Lx6 LINE L1 -2 7458 6967 2 670 455 216 284 0 chr11 11225971 11226172 -110617684 + Lx9 LINE L1 6431 6687 -957 2 670 863 233 62 12 chr11 11226350 11226606 -110617250 + L1_Mur3 LINE L1 5313 5581 -299 2 670 392 279 107 18 chr11 11226602 11226770 -110617086 - Lx8 LINE L1 -1185 6288 6106 2 670 334 355 61 40 chr11 11227020 11227267 -110616589 - L1M5 LINE L1 -3651 2495 2244 2 670 237 204 69 88 chr11 11227273 11227375 -110616481 + L1VL2 LINE L1 300 399 -5936 2 670 2144 154 52 34 chr11 11227579 11228136 -110615720 + L1VL4 LINE L1 499 1071 -2488 2 670 30312 90 9 8 chr11 11228138 11233520 -110610336 + L1Md_F2 LINE L1 207 5586 -297 2 670 7639 59 16 1 chr11 11233520 11234501 -110609355 + L1Md_F2 LINE L1 5587 6582 0 2 670 10817 178 36 3 chr11 11234504 11236515 -110607341 + L1_Mur1 LINE L1 1412 3485 -2401 2 670 279 0 0 0 chr11 11236515 11236546 -110607310 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 670 10817 178 36 3 chr11 11236546 11236893 -110606963 + L1_Mur1 LINE L1 3486 3846 -2040 2 670 2249 161 7 144 chr11 11236893 11237482 -110606374 + RMER17B LTR ERVK 1 508 -450 2 670 3807 82 25 0 chr11 11237482 11238032 -110605824 + L1_Mus4 LINE L1 6053 6616 -20 2 670 2034 208 27 14 chr11 11238147 11238561 -110605295 - MTD LTR MaLR 0 419 1 2 670 961 280 111 50 chr11 11238572 11239780 -110604076 + L1_Mur3 LINE L1 1685 2965 -2915 2 670 644 321 30 30 chr11 11240377 11240471 -110603385 + B3 SINE B2 1 99 -117 2 670 1721 162 38 13 chr11 11240471 11240789 -110603067 + ORR1A3 LTR MaLR 1 326 0 2 670 644 321 30 30 chr11 11240789 11240896 -110602960 + B3 SINE B2 100 202 -14 2 670 545 279 8 0 chr11 11241155 11241277 -110602579 + B1_Mur1 SINE Alu 17 139 -10 2 670 345 265 139 0 chr11 11241286 11241467 -110602389 + Lx9 LINE L1 2192 2406 -3441 2 670 3512 214 35 44 chr11 11241589 11242450 -110601406 - RMER13B LTR ERVK -55 853 1 2 670 656 264 0 57 chr11 11242454 11242735 -110601121 + Lx9 LINE L1 3105 3369 -2478 2 670 34720 36 4 7 chr11 11242738 11248143 -110595713 + L1Md_T LINE L1 205 5586 -297 2 670 8437 31 0 3 chr11 11248144 11249141 -110594715 + L1Md_T LINE L1 5588 6581 -1 2 670 693 244 52 42 chr11 11249250 11249558 -110594298 + Lx9 LINE L1 3496 3806 -2041 2 670 558 232 104 50 chr11 11249563 11249803 -110594053 + Lx9 LINE L1 4695 4947 -900 2 670 1308 203 80 26 chr11 11249804 11250129 -110593727 + RLTR20B1 LTR ERVK 1 470 -93 2 670 441 0 0 0 chr11 11250129 11250178 -110593678 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 670 829 181 73 45 chr11 11250178 11250272 -110593584 + RLTR20B1 LTR ERVK 471 562 -1 2 670 595 266 121 30 chr11 11250272 11250678 -110593178 + Lx9 LINE L1 4944 5386 -461 2 670 1587 202 147 92 chr11 11250681 11251116 -110592740 + MT2A LTR ERVL 1 459 -74 2 670 1239 221 23 15 chr11 11251133 11251486 -110592370 + Lx9 LINE L1 5564 5957 -1687 2 670 474 289 140 13 chr11 11251670 11251905 -110591951 + Lx9 LINE L1 6313 6577 -1067 2 670 435 222 2 12 chr11 11251889 11251999 -110591857 + Lx9 LINE L1 6878 6959 -685 2 670 252 77 0 0 chr11 11251999 11252038 -110591818 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 670 419 319 5 69 chr11 11252038 11252240 -110591616 + Lx9 LINE L1 6972 7160 -484 2 670 21 36 0 0 chr11 11252329 11252357 -110591499 + AT_rich Low_complexity Low_complexity 1 28 0 2 670 807 207 78 0 chr11 11253639 11253832 -110590024 + B3 SINE B2 1 208 -8 2 670 6981 61 1 0 chr11 11254171 11255104 -110588752 - L1_Mm LINE L1 -240 5643 4710 2 670 642 302 68 43 chr11 11255109 11255389 -110588467 + Lx6 LINE L1 7148 7434 -26 2 670 955 278 166 23 chr11 11256205 11256779 -110587077 + Lx8 LINE L1 6129 6784 -689 3 670 217 225 0 0 chr11 11257024 11257064 -110586792 + B1_Mur2 SINE Alu 89 128 -21 3 670 1236 293 94 28 chr11 11257212 11258607 -110585249 + L1_Rod LINE L1 1389 2825 -3055 3 670 733 239 75 57 chr11 11258654 11258933 -110584923 + RLTR15 LTR ERVK 1 284 -75 3 670 5598 70 1 47 chr11 11258940 11259730 -110584126 - L1_Mus2 LINE L1 0 6566 5813 3 670 8046 83 5 1 chr11 11259730 11260860 -110582996 + L1_Mus2 LINE L1 4675 5809 -74 3 670 1287 223 102 11 chr11 11260915 11261269 -110582587 + Lx7 LINE L1 7026 7411 -285 3 670 251 309 31 36 chr11 11261285 11261480 -110582376 + Lx7 LINE L1 7481 7674 -22 3 670 24712 114 93 40 chr11 11261484 11264075 -110579781 + Lx3_Mus LINE L1 3 3145 -2741 3 670 396 0 0 0 chr11 11264075 11264119 -110579737 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 670 24712 91 87 47 chr11 11264119 11264436 -110579420 + Lx3_Mus LINE L1 3146 3476 -2410 3 670 4762 56 0 8 chr11 11264436 11265031 -110578825 + L1Md_F2 LINE L1 5981 6570 -12 3 670 24712 96 67 35 chr11 11265031 11268576 -110575280 + Lx3_Mus LINE L1 3477 7009 0 3 670 809 215 97 34 chr11 11268673 11269054 -110574802 + L1_Mur3 LINE L1 2879 3283 -2597 3 670 1003 187 114 27 chr11 11269054 11269274 -110574582 - MTD LTR MaLR -5 414 176 3 670 1738 280 113 26 chr11 11269345 11270296 -110573560 + L1_Mur3 LINE L1 3602 4636 -1244 3 670 1463 28 5 5 chr11 11270296 11270511 -110573345 + (CA)n Simple_repeat Simple_repeat 1 215 0 3 670 1738 280 113 26 chr11 11270511 11270612 -110573244 + L1_Mur3 LINE L1 4637 4746 -1134 3 670 360 202 236 42 chr11 11270674 11270839 -110573017 + B3A SINE B2 2 198 0 3 670 301 317 65 30 chr11 11270981 11271150 -110572706 + L1M5 LINE L1 4457 4631 -1515 3 670 337 277 77 43 chr11 11271541 11271658 -110572198 + B1F SINE Alu 18 138 -11 3 670 314 23 0 23 chr11 11271658 11271702 -110572154 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 670 544 107 0 0 chr11 11271752 11271836 -110572020 + L1_Mm LINE L1 5220 5303 -580 3 83 13904 58 2 0 chr11 11271831 11273670 -110570186 - L1_Mus1 LINE L1 -181 5702 3860 3 671 6056 74 0 1 chr11 11273671 11274458 -110569398 + L1_Mus1 LINE L1 5782 6567 0 3 671 430 88 0 0 chr11 11274896 11274964 -110568892 - L1Md_F2 LINE L1 -12 6570 6503 3 671 6759 77 1 1 chr11 11274967 11275913 -110567943 - L1_Mm LINE L1 -331 5552 4607 3 671 2593 220 67 8 chr11 11276053 11276795 -110567061 + L1_Mur3 LINE L1 4762 5547 -333 3 671 2195 188 8 8 chr11 11277366 11277849 -110566007 + L1_Mur1 LINE L1 862 1344 -5640 3 671 36385 12 1 7 chr11 11277855 11283095 -110560761 + L1Md_A LINE L1 381 5585 -298 3 671 8776 17 0 0 chr11 11283096 11284091 -110559765 + L1Md_A LINE L1 5587 6581 -1 3 671 1896 146 3 0 chr11 11284091 11284460 -110559396 + L1_Mur1 LINE L1 1340 1709 -4177 3 671 285 290 138 45 chr11 11284613 11285100 -110558756 + L1M3 LINE L1 3894 4425 -1715 3 671 1083 219 153 21 chr11 11285901 11286228 -110557628 - Lx8 LINE L1 -1 7472 7103 3 671 444 313 36 12 chr11 11286236 11286404 -110557452 + Lx8 LINE L1 6528 6699 -774 3 671 309 131 0 0 chr11 11287096 11287157 -110556699 + (A)n Simple_repeat Simple_repeat 1 61 0 3 671 1264 27 0 0 chr11 11287556 11287703 -110556153 + B1_Mus2 SINE Alu 1 147 0 3 671 451 276 124 5 chr11 11287844 11288030 -110555826 + B3 SINE B2 3 210 -6 3 671 299 219 14 0 chr11 11288505 11288578 -110555278 - L1_Mur3 LINE L1 -1354 4526 4453 3 671 373 231 143 54 chr11 11288575 11288799 -110555057 + Lx8 LINE L1 6638 6881 -592 3 671 257 319 51 80 chr11 11288971 11289204 -110554652 + LTRIS_Mus LTR ERV1 191 532 -55 3 671 216 185 0 0 chr11 11289339 11289393 -110554463 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 3 671 1628 45 0 0 chr11 11289466 11289664 -110554192 + IAPEY2_LTR LTR ERVK 32 229 -128 3 671 657 118 35 35 chr11 11289665 11289779 -110554077 + IAPLTR4_I LTR ERVK 67 180 -1290 3 671 8458 124 26 37 chr11 11289778 11291254 -110552602 + IAPEY3-int LTR ERVK 524 1982 -5698 3 671 3311 68 11 0 chr11 11291234 11291677 -110552179 + IAPEY3-int LTR ERVK 2242 2689 -4991 3 671 203 368 44 0 chr11 11291692 11291806 -110552050 + L3b LINE CR1 335 453 -29 3 671 2812 108 15 31 chr11 11291806 11292462 -110551394 + IAPEY3-int LTR ERVK 6984 7581 0 3 671 3130 28 0 0 chr11 11292462 11292816 -110551040 + IAPEY2_LTR LTR ERVK 1 354 -3 3 671 587 209 0 152 chr11 11293157 11293400 -110550456 + MMVL30-int LTR ERV1 844 1049 -2649 3 671 504 230 108 18 chr11 11293560 11293784 -110550072 + MMVL30-int LTR ERV1 1292 1538 -6063 3 671 474 132 0 0 chr11 11293859 11293935 -110549921 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 3 671 235 288 0 0 chr11 11294166 11294225 -110549631 + B1F2 SINE Alu 1 59 -90 3 671 1331 166 7 19 chr11 11294275 11294546 -110549310 + MMVL30-int LTR ERV1 1516 1783 -1915 3 671 2005 297 61 64 chr11 11294521 11294716 -110549140 + MMVL30-int LTR ERV1 3802 4006 -3772 3 671 342 0 0 0 chr11 11294716 11294754 -110549102 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 671 3454 240 59 48 chr11 11294754 11296392 -110547464 + MMVL30-int LTR ERV1 2875 5392 -2386 3 671 279 270 193 21 chr11 11296378 11296518 -110547338 + MMVL30-int LTR ERV1 7613 7776 -2 3 671 252 309 52 105 chr11 11296685 11296863 -110546993 + RLTR41 LTR ERV1 191 360 -86 3 671 180 0 0 0 chr11 11296863 11296883 -110546973 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 671 252 309 52 105 chr11 11296883 11296914 -110546942 + RLTR41 LTR ERV1 361 388 -58 3 671 342 250 42 0 chr11 11296953 11297049 -110546807 + Lx8 LINE L1 6883 6982 -491 3 671 2533 146 21 0 chr11 11297070 11297588 -110546268 - MusHAL1 LINE L1 -2205 1148 621 3 671 2630 120 72 7 chr11 11297588 11298017 -110545839 - L1_Mus4 LINE L1 0 6636 6180 3 671 927 62 70 0 chr11 11298018 11298147 -110545709 + L1_Mus4 LINE L1 6045 6182 -454 3 671 895 78 82 31 chr11 11298142 11298301 -110545555 - L1_Mur1 LINE L1 -5797 1185 1019 3 671 2737 75 40 8 chr11 11298302 11298680 -110545176 + MTA_Mm LTR MaLR 7 396 0 3 671 3771 155 85 188 chr11 11298679 11299208 -110544648 + MTA_Mm-int LTR MaLR 2 505 -753 3 671 8040 47 5 2 chr11 11299208 11300201 -110543655 + L1Md_F2 LINE L1 5587 6582 0 3 671 3771 155 85 188 chr11 11300201 11300213 -110543643 + MTA_Mm-int LTR MaLR 506 514 -744 3 671 1071 83 0 7 chr11 11300213 11300349 -110543507 + B1_Mm SINE Alu 3 138 -9 3 671 343 16 45 30 chr11 11300349 11300415 -110543441 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 3 671 4863 85 53 41 chr11 11300424 11301282 -110542574 + MTA_Mm-int LTR MaLR 377 1258 0 3 671 675 94 0 0 chr11 11301282 11301378 -110542478 + MTA_Mm LTR MaLR 1 96 -311 3 671 1116 34 2 2 chr11 11301357 11301509 -110542347 + MTA_Mm LTR MaLR 255 407 0 3 671 635 252 40 50 chr11 11301511 11301821 -110542035 - L1_Mur1 LINE L1 -5638 1017 719 3 671 1072 238 153 8 chr11 11301957 11302355 -110541501 + Lx8 LINE L1 7015 7470 -3 3 671 1285 86 6 0 chr11 11302381 11302555 -110541301 + B2_Mm2 SINE B2 2 176 -19 3 671 344 342 0 13 chr11 11302578 11302699 -110541157 + PB1D7 SINE Alu 1 120 0 3 671 26 0 0 0 chr11 11304065 11304091 -110539765 + AT_rich Low_complexity Low_complexity 1 26 0 3 671 441 115 0 0 chr11 11304932 11305010 -110538846 + (A)n Simple_repeat Simple_repeat 1 78 0 3 671 303 237 78 21 chr11 11305302 11305538 -110538318 + L1M4 LINE L1 1285 1527 -5118 3 671 1118 128 50 0 chr11 11305571 11305751 -110538105 + B2_Mm2 SINE B2 3 191 -4 3 671 230 116 0 23 chr11 11305752 11305796 -110538060 + (GGAGAA)n Simple_repeat Simple_repeat 6 48 0 3 671 348 282 33 97 chr11 11306101 11306333 -110537523 + L1M4 LINE L1 2854 3071 -3676 3 671 508 314 66 62 chr11 11306357 11306601 -110537255 + B4A SINE B4 48 292 0 3 671 496 254 82 89 chr11 11306714 11306861 -110536995 + L1MC LINE L1 2597 2751 -3395 3 671 998 67 7 0 chr11 11306861 11306996 -110536860 + L1_Mus2 LINE L1 6430 6565 -1 3 671 496 254 82 89 chr11 11306996 11307288 -110536568 + L1MC LINE L1 2752 3033 -3113 3 671 442 200 70 84 chr11 11307289 11307319 -110536537 + MT2B LTR ERVL 125 152 -449 3 671 881 90 0 16 chr11 11307319 11307443 -110536413 + B1_Mm SINE Alu 1 122 -25 3 671 2551 62 3 3 chr11 11307612 11307951 -110535905 - L1_Mus1 LINE L1 -124 6443 6105 3 671 421 118 66 38 chr11 11307951 11308057 -110535799 + L1Md_F3 LINE L1 6475 6583 -1 3 671 26 50 0 0 chr11 11308674 11308714 -110535142 + AT_rich Low_complexity Low_complexity 1 40 0 3 671 27 29 0 0 chr11 11309067 11309101 -110534755 + AT_rich Low_complexity Low_complexity 1 34 0 3 671 30 0 0 0 chr11 11309546 11309576 -110534280 + AT_rich Low_complexity Low_complexity 1 30 0 3 671 294 325 0 36 chr11 11309643 11309726 -110534130 + B1F1 SINE Alu 1 80 -69 3 671 435 281 44 17 chr11 11310027 11310208 -110533648 - L1_Rod LINE L1 -3672 2175 1990 3 671 297 75 0 0 chr11 11310306 11310346 -110533510 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 671 24 0 0 0 chr11 11310506 11310530 -110533326 + AT_rich Low_complexity Low_complexity 1 24 0 3 671 574 258 123 16 chr11 11310917 11311169 -110532687 - Lx7 LINE L1 -1825 5871 5593 3 671 648 270 114 79 chr11 11311636 11311910 -110531946 - MLT1D LTR MaLR -32 473 166 3 671 406 225 54 9 chr11 11311910 11312022 -110531834 + PB1D7 SINE Alu 1 117 -3 3 671 648 270 114 79 chr11 11312022 11312065 -110531791 - MLT1D LTR MaLR -340 165 144 3 671 864 253 118 82 chr11 11312065 11312431 -110531425 + MTEa LTR MaLR 1 379 0 3 671 277 297 83 30 chr11 11312431 11312555 -110531301 - MLT1D LTR MaLR -374 131 1 3 671 5718 227 75 17 chr11 11312968 11314028 -110529828 + Lx6 LINE L1 5660 6743 -717 3 671 675 0 0 0 chr11 11314028 11314103 -110529753 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 671 5718 223 75 17 chr11 11314103 11314610 -110529246 + Lx6 LINE L1 6744 7284 -176 3 671 309 100 0 0 chr11 11314620 11314670 -110529186 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 3 671 39 22 0 0 chr11 11315072 11315118 -110528738 + AT_rich Low_complexity Low_complexity 1 46 0 3 671 232 253 25 12 chr11 11315630 11315710 -110528146 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 671 815 98 0 39 chr11 11315715 11315843 -110528013 - B1_Mus2 SINE Alu -23 124 2 3 671 279 209 18 9 chr11 11315998 11316109 -110527747 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 671 1653 269 7 7 chr11 11316613 11317077 -110526779 + Lx7 LINE L1 6725 7188 -508 3 671 353 343 135 42 chr11 11317078 11317486 -110526370 + Charlie8 DNA MER1_type 1981 2426 -2 3 671 24 0 0 0 chr11 11317760 11317784 -110526072 + AT_rich Low_complexity Low_complexity 1 24 0 3 671 423 0 0 0 chr11 11318459 11318506 -110525350 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 671 22 70 0 0 chr11 11319581 11319624 -110524232 + AT_rich Low_complexity Low_complexity 1 43 0 3 671 28026 120 30 2 chr11 11319850 11323195 -110520661 - L1_Mus4 LINE L1 -2 6634 3180 3 671 212 0 36 0 chr11 11323195 11323223 -110520633 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 671 28026 115 13 1 chr11 11323223 11324151 -110519705 - L1_Mus4 LINE L1 -2704 3179 2233 3 671 2741 122 16 2 chr11 11324151 11324579 -110519277 - L1_Mus3 LINE L1 -13 6625 6192 3 671 28026 98 34 12 chr11 11324579 11326388 -110517468 - L1_Mus4 LINE L1 -3651 2232 396 3 671 465 34 0 0 chr11 11327075 11327134 -110516722 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 671 7448 195 58 29 chr11 11327726 11328056 -110515800 + Lx7 LINE L1 5587 5926 -1770 3 671 432 0 0 0 chr11 11328056 11328104 -110515752 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 671 7448 195 58 29 chr11 11328104 11329466 -110514390 + Lx7 LINE L1 5927 7328 -368 3 671 245 81 31 31 chr11 11329497 11329561 -110514295 + (TTTTG)n Simple_repeat Simple_repeat 3 66 0 3 671 865 28 0 0 chr11 11329571 11329677 -110514179 - B1_Mm SINE Alu 0 147 42 3 671 317 224 211 61 chr11 11329677 11329990 -110513866 + Lx7 LINE L1 7337 7696 0 3 671 333 0 0 0 chr11 11330846 11330883 -110512973 + (TAA)n Simple_repeat Simple_repeat 1 37 0 3 671 31 76 0 0 chr11 11331749 11331815 -110512041 + AT_rich Low_complexity Low_complexity 1 66 0 3 671 211 306 6 39 chr11 11331915 11332095 -110511761 + T-rich Low_complexity Low_complexity 1 174 0 3 671 3662 78 2 0 chr11 11332535 11333011 -110510845 - L1_Mus1 LINE L1 0 6567 6091 3 671 838 97 8 0 chr11 11333011 11333135 -110510721 + L1_Mus1 LINE L1 5956 6080 -487 3 671 234 281 24 12 chr11 11333537 11333620 -110510236 + L1M4c LINE L1 1575 1658 -4726 4 671 266 318 81 40 chr11 11333886 11334349 -110509507 + L1M4c LINE L1 2415 2891 -3192 4 671 22 70 0 0 chr11 11334986 11335029 -110508827 + AT_rich Low_complexity Low_complexity 1 43 0 4 671 336 291 51 32 chr11 11335310 11335527 -110508329 + L1M4c LINE L1 3126 3346 -3033 4 671 1279 240 58 42 chr11 11335587 11336014 -110507842 + L1_Mur3 LINE L1 125 558 -7170 4 671 1423 203 57 8 chr11 11336007 11336422 -110507434 + L1_Mur3 LINE L1 890 1259 -5827 4 671 1140 88 0 0 chr11 11336428 11336575 -110507281 + B1_Mm SINE Alu 1 147 0 4 671 749 185 0 13 chr11 11336580 11336739 -110507117 + GA-rich Low_complexity Low_complexity 1 157 0 4 671 589 221 0 0 chr11 11336749 11336880 -110506976 + L1_Mur3 LINE L1 1264 1394 -4486 4 671 1165 134 50 8 chr11 11337957 11338197 -110505659 + L1_Mur3 LINE L1 1408 1657 -4223 4 671 1000 111 21 0 chr11 11338197 11338341 -110505515 + B1_Mus1 SINE Alu 2 148 0 4 671 6526 144 16 30 chr11 11338346 11339560 -110504296 + L1_Mur3 LINE L1 2656 3852 -2025 4 671 24077 127 19 5 chr11 11339570 11343921 -110499935 + L1VL4 LINE L1 889 5302 -581 4 671 6212 75 13 219 chr11 11343921 11344704 -110499152 + L1_Mus1 LINE L1 4806 5584 -299 4 671 7841 58 0 4 chr11 11344704 11345690 -110498166 + L1Md_F2 LINE L1 5589 6570 -12 4 671 7386 68 16 60 chr11 11345690 11346958 -110496898 + L1_Mus1 LINE L1 5585 6567 0 4 671 30 0 0 0 chr11 11346958 11346988 -110496868 + AT_rich Low_complexity Low_complexity 1 30 0 4 671 3314 184 25 20 chr11 11346988 11347682 -110496174 + L1_Mm LINE L1 4602 5298 -585 4 671 5190 106 54 5 chr11 11347682 11348472 -110495384 + L1_Mus4 LINE L1 5808 6636 0 4 671 234 267 0 0 chr11 11348472 11348484 -110495372 + L1M LINE L1 5327 5338 -965 4 671 10798 158 45 64 chr11 11348487 11349211 -110494645 + L1_Mur3 LINE L1 3444 4128 -1752 4 671 1556 126 28 59 chr11 11349211 11349497 -110494359 + Lx3A LINE L1 6698 6974 -7 4 671 10798 158 45 64 chr11 11349497 11351195 -110492661 + L1_Mur3 LINE L1 4129 5820 -60 4 671 270 0 0 0 chr11 11351208 11351238 -110492618 + (A)n Simple_repeat Simple_repeat 1 30 0 4 671 1146 316 114 31 chr11 11351334 11351744 -110492112 + L1MA8 LINE L1 4178 4611 -1532 4 671 1782 80 16 0 chr11 11351744 11351994 -110491862 + L1_Mus4 LINE L1 6383 6636 0 4 671 1146 316 114 31 chr11 11351994 11352682 -110491174 + L1MA8 LINE L1 4612 5366 -777 4 671 1693 217 48 0 chr11 11352680 11353035 -110490821 - Lx7 LINE L1 -447 7249 6878 4 671 1419 182 29 52 chr11 11353062 11353409 -110490447 + Lx7 LINE L1 7358 7696 0 4 671 1215 180 120 13 chr11 11353509 11353783 -110490073 + Lx9 LINE L1 7298 7597 -47 4 671 769 92 17 0 chr11 11353783 11353903 -110489953 + (GAA)n Simple_repeat Simple_repeat 3 124 0 4 671 1215 180 120 13 chr11 11353903 11353937 -110489919 + Lx9 LINE L1 7598 7639 -5 4 671 511 266 186 21 chr11 11353944 11354369 -110489487 + L1MA8 LINE L1 5469 5938 -374 4 671 267 254 0 0 chr11 11354599 11354654 -110489202 - B4A SINE B4 -236 56 2 4 671 538 304 74 90 chr11 11354804 11355115 -110488741 + MLT1B LTR MaLR 85 390 0 4 671 232 222 0 0 chr11 11355197 11355242 -110488614 + LTR82A LTR ERVL 384 428 -444 4 671 340 278 152 29 chr11 11355775 11356123 -110487733 + L1M4 LINE L1 1005 1395 -5147 4 671 271 280 147 56 chr11 11356403 11356634 -110487222 + L1M4 LINE L1 1528 1779 -4867 4 671 216 123 52 17 chr11 11356660 11356718 -110487138 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 4 671 226 285 113 0 chr11 11356718 11356869 -110486987 + L1M4 LINE L1 3941 4108 -2536 4 671 400 349 68 7 chr11 11356998 11357145 -110486711 + RSINE1 SINE B4 3 158 -7 4 671 788 289 141 22 chr11 11357208 11358214 -110485642 + L1M4 LINE L1 4312 5502 -1142 4 671 517 205 162 0 chr11 11358290 11358407 -110485449 + B1_Mus1 SINE Alu 1 136 -12 4 671 587 51 13 0 chr11 11358408 11358487 -110485369 + (GAGAA)n Simple_repeat Simple_repeat 4 83 0 4 671 619 277 70 21 chr11 11358511 11358784 -110485072 + L1M4 LINE L1 5686 5971 -705 4 671 288 0 0 0 chr11 11358784 11358816 -110485040 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 4 671 619 283 65 22 chr11 11358816 11358887 -110484969 + L1M4 LINE L1 5972 6045 -631 4 671 225 125 0 0 chr11 11358965 11359005 -110484851 + L1M4 LINE L1 5788 5827 -347 4 671 375 154 0 0 chr11 11359301 11359366 -110484490 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 671 230 309 196 29 chr11 11360318 11360491 -110483365 + MIRb SINE MIR 8 209 -59 4 671 1192 65 0 6 chr11 11360886 11361055 -110482801 - L1Md_F2 LINE L1 -7 6575 6408 4 671 1139 248 19 44 chr11 11361060 11361377 -110482479 - MTD LTR MaLR -108 311 3 4 671 36 23 0 0 chr11 11362139 11362182 -110481674 + GC_rich Low_complexity Low_complexity 1 43 0 4 671 21 36 0 0 chr11 11362979 11363007 -110480849 + AT_rich Low_complexity Low_complexity 1 28 0 4 671 249 57 0 0 chr11 11363672 11363707 -110480149 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 671 225 0 0 0 chr11 11363709 11363734 -110480122 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 671 183 80 0 0 chr11 11363845 11363870 -110479986 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 671 21 0 0 0 chr11 11364026 11364047 -110479809 + AT_rich Low_complexity Low_complexity 1 21 0 4 671 219 36 0 0 chr11 11364202 11364230 -110479626 + (A)n Simple_repeat Simple_repeat 1 28 0 4 671 26 30 0 0 chr11 11365045 11365078 -110478778 + AT_rich Low_complexity Low_complexity 1 33 0 4 671 515 209 61 188 chr11 11365966 11366167 -110477689 + B3 SINE B2 3 193 0 4 671 187 319 113 31 chr11 11366456 11366553 -110477303 + MIR SINE MIR 49 153 -109 4 671 196 346 115 23 chr11 11366656 11366786 -110477070 + MIRb SINE MIR 127 268 0 4 671 3017 235 77 4 chr11 11367006 11367742 -110476114 - Lx2B LINE L1 0 7000 6211 4 671 1026 166 0 0 chr11 11367732 11367901 -110475955 + L1_Mur1 LINE L1 5410 5578 -308 4 671 374 275 26 42 chr11 11367901 11368072 -110475784 - MLT1A0 LTR MaLR -28 362 167 4 671 743 164 0 23 chr11 11368277 11368452 -110475404 + GA-rich Low_complexity Low_complexity 2 172 0 4 671 358 315 45 90 chr11 11368992 11369215 -110474641 + L2c LINE L2 3043 3255 -132 4 671 273 95 31 16 chr11 11369403 11369467 -110474389 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 671 582 288 42 33 chr11 11370320 11370532 -110473324 - RLTR42-int LTR ERVK -116 5406 5193 4 671 1220 205 113 10 chr11 11370891 11371302 -110472554 - L1_Mur2 LINE L1 -5856 856 328 4 671 3798 164 38 33 chr11 11371424 11372248 -110471608 + Lx5 LINE L1 1695 2522 -3355 4 671 8169 161 79 13 chr11 11372246 11374865 -110468991 + Lx5 LINE L1 4266 7050 0 4 671 2792 206 42 92 chr11 11375061 11375915 -110467941 - RLTR42-int LTR ERVK -346 5176 4366 4 671 304 176 0 0 chr11 11376040 11376091 -110467765 + RLTR42-int LTR ERVK 1280 1330 -4192 4 671 248 217 50 0 chr11 11377641 11377701 -110466155 + L1MA4 LINE L1 5863 5925 -375 4 671 270 0 0 0 chr11 11377701 11377731 -110466125 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 671 360 0 0 0 chr11 11377731 11377770 -110466086 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 671 192 40 0 0 chr11 11377977 11378002 -110465854 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 4 671 25 31 0 0 chr11 11378009 11378041 -110465815 + AT_rich Low_complexity Low_complexity 1 32 0 4 671 1966 160 56 43 chr11 11378318 11378428 -110465428 - RLTR20B2 LTR ERVK 0 560 465 4 671 207 0 0 0 chr11 11378428 11378451 -110465405 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 671 1966 189 88 50 chr11 11378451 11378859 -110464997 - RLTR20B2 LTR ERVK -96 464 1 4 671 4799 167 51 45 chr11 11378859 11380859 -110462997 - MYSERV16_I-int LTR ERVK 0 2326 123 4 671 213 39 0 0 chr11 11380859 11380885 -110462971 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 671 4245 169 64 65 chr11 11380885 11381013 -110462843 - MYSERV16_I-int LTR ERVK -2204 122 5 4 671 282 204 101 55 chr11 11381094 11381203 -110462653 - RMER3D-int LTR ERVK -1618 1224 1111 4 671 23 0 0 0 chr11 11382304 11382327 -110461529 + AT_rich Low_complexity Low_complexity 1 23 0 4 671 635 261 45 62 chr11 11382686 11382862 -110460994 - B3A SINE B2 -5 193 21 4 671 278 200 118 34 chr11 11383268 11383387 -110460469 + L1MEg LINE L1 1686 1814 -4428 4 671 310 283 183 39 chr11 11384097 11384277 -110459579 + L1MEg LINE L1 3010 3215 -2931 4 671 1169 281 106 12 chr11 11384334 11384748 -110459108 + Lx8 LINE L1 6830 7282 -191 4 671 846 158 43 6 chr11 11384835 11384997 -110458859 - L1_Mur3 LINE L1 -579 5594 5392 4 671 350 307 66 38 chr11 11385123 11385306 -110458550 + L1MEa LINE L1 824 1011 -5125 4 671 25 51 0 0 chr11 11385341 11385380 -110458476 + AT_rich Low_complexity Low_complexity 1 39 0 4 671 312 266 64 9 chr11 11386211 11386321 -110457535 + L1MEa LINE L1 2164 2279 -3867 4 671 269 271 101 29 chr11 11386560 11386769 -110457087 + L1MEa LINE L1 2817 3040 -3106 4 671 24 0 0 0 chr11 11386879 11386903 -110456953 + AT_rich Low_complexity Low_complexity 1 24 0 4 671 521 286 38 0 chr11 11386914 11387047 -110456809 - ID_B1 SINE B4 -6 218 81 4 671 737 311 67 26 chr11 11387080 11387585 -110456271 + L1MA9 LINE L1 5739 6264 -48 4 671 898 211 88 10 chr11 11387977 11388323 -110455533 - Lx7 LINE L1 -397 7299 6906 4 671 319 188 125 0 chr11 11388313 11388393 -110455463 - L1_Mur3 LINE L1 -7091 621 532 4 671 229 310 80 11 chr11 11391321 11391409 -110452447 - L1MC LINE L1 -2259 5623 5530 4 671 6458 110 36 7 chr11 11391514 11392441 -110451415 - RMER17B LTR ERVK -4 954 1 4 671 352 363 8 75 chr11 11392621 11392755 -110451101 + RSINE1 SINE B4 5 129 -36 4 671 303 71 0 0 chr11 11392783 11392825 -110451031 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 671 28 0 0 0 chr11 11392868 11392896 -110450960 + AT_rich Low_complexity Low_complexity 1 28 0 4 671 383 154 31 0 chr11 11393124 11393189 -110450667 + L1Md_F LINE L1 56 122 -6397 4 671 7423 62 17 14 chr11 11393189 11394111 -110449745 + L1Md_F2 LINE L1 5656 6580 -2 4 671 502 242 48 0 chr11 11394519 11394643 -110449213 + Lx9 LINE L1 7346 7475 -169 4 671 395 159 44 61 chr11 11394665 11394779 -110449077 + Lx9 LINE L1 7532 7643 -1 4 671 44 70 0 0 chr11 11394825 11394911 -110448945 + AT_rich Low_complexity Low_complexity 1 86 0 4 671 210 239 22 0 chr11 11396684 11396730 -110447126 + MIR SINE MIR 90 136 -72 4 671 1546 274 79 40 chr11 11396814 11397012 -110446844 - RCHARR1 DNA MER1_type -303 671 485 4 671 767 246 36 16 chr11 11397012 11397206 -110446650 + B3A SINE B2 1 198 0 4 671 1546 274 79 40 chr11 11397206 11397653 -110446203 - RCHARR1 DNA MER1_type -490 484 1 4 671 523 342 44 19 chr11 11397722 11397928 -110445928 - MER47B DNA MER2_type -171 247 37 4 671 719 271 234 12 chr11 11398231 11398355 -110445501 - ORR1D2 LTR MaLR -4 380 191 4 671 213 65 0 0 chr11 11398355 11398386 -110445470 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 671 719 234 111 10 chr11 11398386 11398563 -110445293 - ORR1D2 LTR MaLR -180 190 2 4 671 1959 43 4 13 chr11 11398579 11398816 -110445040 + L1Md_F2 LINE L1 6345 6579 -3 4 671 541 261 124 11 chr11 11398862 11399048 -110444808 - MER2 DNA MER2_type -22 323 117 4 671 396 0 0 0 chr11 11399596 11399640 -110444216 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 671 186 43 0 0 chr11 11400596 11400619 -110443237 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 671 205 108 26 26 chr11 11400809 11400847 -110443009 + C-rich Low_complexity Low_complexity 1 38 0 4 671 497 92 13 0 chr11 11400881 11400957 -110442899 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 4 671 206 295 79 59 chr11 11402240 11402341 -110441515 + MIRc SINE MIR 100 202 -66 5 83 238 322 65 48 chr11 11403234 11403358 -110440498 - MIRc SINE MIR -43 225 100 5 672 941 240 16 10 chr11 11404011 11404205 -110439651 + B3A SINE B2 1 195 -3 5 672 180 0 0 0 chr11 11404222 11404242 -110439614 + (TGGA)n Simple_repeat Simple_repeat 4 23 0 5 672 1578 132 37 8 chr11 11404276 11404544 -110439312 - RMER12 LTR ERVK -585 737 462 5 672 308 274 125 0 chr11 11404622 11404719 -110439137 + B1F SINE Alu 13 117 0 5 672 295 347 0 0 chr11 11404864 11404939 -110438917 + ID4_ SINE ID 3 77 -6 5 672 219 247 0 13 chr11 11405326 11405404 -110438452 + T-rich Low_complexity Low_complexity 4 80 0 5 672 21 0 0 0 chr11 11405530 11405551 -110438305 + AT_rich Low_complexity Low_complexity 1 21 0 5 672 22 0 0 0 chr11 11406817 11406839 -110437017 + AT_rich Low_complexity Low_complexity 1 22 0 5 672 789 172 0 0 chr11 11407538 11407689 -110436167 + (TA)n Simple_repeat Simple_repeat 1 151 0 5 672 273 29 0 0 chr11 11408963 11408997 -110434859 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 672 2523 167 78 26 chr11 11410009 11410100 -110433756 - RLTR20B3 LTR ERVK -9 568 471 5 672 333 0 0 0 chr11 11410100 11410137 -110433719 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 672 450 0 0 0 chr11 11410137 11410186 -110433670 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 672 2523 167 78 26 chr11 11410186 11410633 -110433223 - RLTR20B3 LTR ERVK -107 470 2 5 672 677 181 15 45 chr11 11410778 11410911 -110432945 + B1F2 SINE Alu 2 130 -19 5 672 758 175 11 11 chr11 11410932 11411111 -110432745 + GA-rich Low_complexity Low_complexity 2 180 0 5 672 1020 276 73 56 chr11 11411122 11411983 -110431873 - L1MA9 LINE L1 -391 5921 5041 5 672 1340 105 11 5 chr11 11413313 11413504 -110430352 - B2_Mm1a SINE B2 -1 192 1 5 672 251 106 43 0 chr11 11414063 11414110 -110429746 + (CATA)n Simple_repeat Simple_repeat 3 51 0 5 672 381 248 73 9 chr11 11416145 11416255 -110427601 + MTEa LTR MaLR 1 117 -242 5 672 1870 183 73 6 chr11 11416303 11416660 -110427196 - MTD LTR MaLR -14 405 25 5 672 420 267 89 45 chr11 11416675 11416832 -110427024 + MTEa LTR MaLR 195 367 -12 5 672 412 312 0 35 chr11 11417439 11417552 -110426304 + PB1D10 SINE Alu 2 110 -7 5 672 828 247 49 0 chr11 11417818 11418041 -110425815 - Lx9 LINE L1 -752 6892 6659 5 672 579 75 21 11 chr11 11418774 11418869 -110424987 + (TC)n Simple_repeat Simple_repeat 1 96 0 5 672 822 68 0 0 chr11 11418883 11419001 -110424855 + (TG)n Simple_repeat Simple_repeat 2 119 0 5 672 561 282 8 0 chr11 11420750 11420881 -110422975 + RSINE1 SINE B4 4 135 -30 5 672 245 120 40 0 chr11 11420886 11420936 -110422920 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 5 672 397 302 78 33 chr11 11421514 11421757 -110422099 + MER2 DNA MER2_type 83 336 -9 5 672 638 304 89 14 chr11 11422648 11422928 -110420928 - MER2 DNA MER2_type -9 336 36 5 672 207 0 0 0 chr11 11423768 11423791 -110420065 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 672 651 99 0 0 chr11 11423791 11423891 -110419965 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 672 433 286 0 10 chr11 11425578 11425677 -110418179 + B1F SINE Alu 16 113 -36 5 672 255 327 119 0 chr11 11425878 11425979 -110417877 + Tigger5 DNA MER2_type 60 172 -2234 5 672 367 298 35 58 chr11 11426170 11426341 -110417515 + MTEa LTR MaLR 142 308 -71 5 672 338 306 52 0 chr11 11426345 11426479 -110417377 - L1M4 LINE L1 -1061 5085 4945 5 672 582 331 0 0 chr11 11427056 11427198 -110416658 - RSINE1 SINE B4 -19 146 5 5 672 306 0 0 0 chr11 11429003 11429037 -110414819 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 672 276 218 47 56 chr11 11429842 11429949 -110413907 - Lx8 LINE L1 -2 7471 7366 5 672 5158 135 19 11 chr11 11431636 11432386 -110411470 + Lx4A LINE L1 6303 7058 0 5 672 28 0 0 0 chr11 11432386 11432414 -110411442 + AT_rich Low_complexity Low_complexity 1 28 0 5 672 12602 62 5 4 chr11 11433617 11435220 -110408636 + L1Md_F2 LINE L1 3983 5586 -297 5 672 8285 59 0 9 chr11 11435220 11436213 -110407643 + L1Md_F2 LINE L1 5587 6570 -12 5 672 480 18 0 0 chr11 11436905 11436962 -110406894 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 672 489 14 43 0 chr11 11436962 11437031 -110406825 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 672 226 216 0 0 chr11 11437769 11437806 -110406050 + ID2 SINE ID 34 70 -13 5 672 668 288 7 0 chr11 11438418 11438557 -110405299 + RSINE1 SINE B4 4 143 -22 5 672 783 21 0 0 chr11 11438559 11438652 -110405204 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 672 2603 261 98 18 chr11 11438971 11439326 -110404530 + Lx8 LINE L1 6585 6968 -505 5 672 236 30 30 0 chr11 11439326 11439359 -110404497 + (CCA)n Simple_repeat Simple_repeat 1 34 0 5 672 2603 261 98 18 chr11 11439359 11439826 -110404030 + Lx8 LINE L1 6969 7472 -1 5 672 1008 313 25 0 chr11 11439998 11440279 -110403577 - B4A SINE B4 0 292 5 5 672 212 288 30 0 chr11 11440573 11440639 -110403217 + MIRc SINE MIR 168 235 -33 5 672 1094 48 28 0 chr11 11441052 11441197 -110402659 - L1Md_F2 LINE L1 0 6582 6434 5 672 296 267 83 83 chr11 11441197 11441401 -110402455 + LTR48B LTR ERV1 440 643 -1 5 672 588 286 66 22 chr11 11443606 11443788 -110400068 + MTEa LTR MaLR 6 195 -184 5 672 232 292 21 10 chr11 11443881 11443978 -110399878 - MLT2C2 LTR ERVL -3 556 459 5 672 926 271 92 27 chr11 11444000 11444338 -110399518 + MTEa LTR MaLR 19 378 -1 5 672 928 215 20 10 chr11 11444939 11445136 -110398720 - B3 SINE B2 -14 202 4 5 672 231 114 0 0 chr11 11447220 11447255 -110396601 + (A)n Simple_repeat Simple_repeat 1 35 0 5 672 306 239 98 0 chr11 11448437 11448529 -110395327 + L1MB3 LINE L1 5457 5557 -614 5 672 272 315 135 49 chr11 11448543 11448847 -110395009 + L1MB3 LINE L1 5849 6178 -5 5 672 213 277 0 0 chr11 11448906 11448953 -110394903 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 672 207 214 0 0 chr11 11449466 11449508 -110394348 + T-rich Low_complexity Low_complexity 1 42 0 5 672 7695 77 12 9 chr11 11449517 11450574 -110393282 - Lx3_Mus LINE L1 0 7009 5950 5 672 470 295 0 0 chr11 11451094 11451199 -110392657 + MTE2b LTR MaLR 177 281 -98 5 672 387 0 0 0 chr11 11451292 11451335 -110392521 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 672 483 33 0 0 chr11 11451335 11451396 -110392460 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 672 493 297 18 66 chr11 11451726 11451869 -110391987 - RSINE1 SINE B4 -5 160 25 5 672 1229 171 42 5 chr11 11451869 11452086 -110391770 + URR1B DNA MER1_type 1 225 0 5 672 493 297 18 66 chr11 11452086 11452108 -110391748 - RSINE1 SINE B4 -141 24 4 5 672 747 137 0 0 chr11 11452195 11452319 -110391537 + (TC)n Simple_repeat Simple_repeat 2 125 0 5 672 970 327 58 15 chr11 11452604 11453004 -110390852 - Lx8 LINE L1 -146 7327 6911 5 672 443 261 54 0 chr11 11453046 11453157 -110390699 + B3 SINE B2 70 186 -30 5 672 429 20 0 0 chr11 11453162 11453212 -110390644 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 5 672 260 315 27 36 chr11 11453464 11453576 -110390280 + MIRb SINE MIR 112 222 -46 5 672 299 322 60 52 chr11 11453765 11454017 -110389839 - MLT1H LTR MaLR -239 310 57 5 672 945 116 0 0 chr11 11454917 11455063 -110388793 + (GGAA)n Simple_repeat Simple_repeat 2 147 0 5 672 240 238 0 0 chr11 11455065 11455128 -110388728 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 5 672 23 0 0 0 chr11 11455324 11455347 -110388509 + AT_rich Low_complexity Low_complexity 1 23 0 5 672 393 22 0 0 chr11 11455348 11455394 -110388462 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 672 392 290 20 0 chr11 11455426 11455526 -110388330 - RSINE1 SINE B4 -60 105 4 5 672 243 0 0 0 chr11 11456153 11456180 -110387676 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 5 672 5038 125 31 1 chr11 11456181 11456944 -110386912 - Lx4A LINE L1 -2 7056 6271 5 672 278 246 0 0 chr11 11459685 11459742 -110384114 + ID4_ SINE ID 1 57 -26 5 672 295 312 0 0 chr11 11459802 11459882 -110383974 + ID4_ SINE ID 3 82 -1 5 672 279 0 0 0 chr11 11461255 11461286 -110382570 + (A)n Simple_repeat Simple_repeat 1 31 0 5 672 245 340 21 0 chr11 11462351 11462448 -110381408 - ORR1D1 LTR MaLR -7 367 269 5 672 240 341 11 0 chr11 11463562 11463653 -110380203 - ORR1D1 LTR MaLR -285 94 3 5 672 209 250 0 0 chr11 11463853 11463897 -110379959 + CT-rich Low_complexity Low_complexity 1 44 0 5 672 405 0 0 0 chr11 11465420 11465465 -110378391 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 672 767 241 34 67 chr11 11466160 11466271 -110377585 + B3 SINE B2 2 116 -100 5 672 2098 197 24 7 chr11 11466271 11466685 -110377171 - MTC LTR MaLR 0 421 1 5 672 767 241 34 67 chr11 11466685 11466782 -110377074 + B3 SINE B2 117 203 -13 5 672 441 0 0 0 chr11 11468235 11468284 -110375572 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 672 1050 211 15 5 chr11 11469855 11470060 -110373796 + B3 SINE B2 1 207 -9 5 672 230 298 74 37 chr11 11470167 11470275 -110373581 + PB1D10 SINE Alu 1 112 -5 5 672 260 349 19 9 chr11 11470733 11470840 -110373016 - MIRb SINE MIR -120 148 41 5 672 331 250 74 12 chr11 11470878 11470959 -110372897 + MER5A1 DNA MER1_type 46 131 -35 5 672 556 293 116 30 chr11 11471409 11471676 -110372180 + MTD LTR MaLR 1 290 -129 5 672 198 0 0 0 chr11 11471865 11471887 -110371969 + (CATG)n Simple_repeat Simple_repeat 2 23 0 5 672 1237 214 38 24 chr11 11472372 11472786 -110371070 + RLTR11A2 LTR ERVK 7 527 0 5 672 680 87 0 19 chr11 11472874 11472980 -110370876 + (TTTTC)n Simple_repeat Simple_repeat 2 105 0 5 672 243 0 0 0 chr11 11472986 11473013 -110370843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 672 1112 90 7 0 chr11 11473013 11473158 -110370698 - B1_Mus1 SINE Alu -2 146 1 5 672 670 238 62 14 chr11 11473526 11473671 -110370185 - B3A SINE B2 -46 152 1 5 672 234 0 0 0 chr11 11474855 11474881 -110368975 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 672 446 327 86 26 chr11 11474888 11475227 -110368629 + L1MB5 LINE L1 3669 4027 -2119 6 672 289 273 0 0 chr11 11475288 11475354 -110368502 - PB1 SINE Alu -30 97 32 6 672 576 213 8 0 chr11 11475382 11475504 -110368352 + L1MB5 LINE L1 4092 4214 -1932 6 672 551 284 160 43 chr11 11476396 11476537 -110367319 + B4A SINE B4 2 163 -129 6 672 1874 71 12 8 chr11 11476537 11476793 -110367063 + L1_Mus2 LINE L1 6309 6565 -1 6 672 551 332 33 66 chr11 11476793 11476912 -110366944 + B4A SINE B4 164 270 -22 6 672 207 139 0 0 chr11 11476934 11476970 -110366886 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 672 244 229 62 0 chr11 11476976 11477072 -110366784 + L1MB5 LINE L1 4358 4459 -1687 6 672 3755 201 181 13 chr11 11477087 11478228 -110365628 - L1_Mur3 LINE L1 -1700 4180 2848 6 672 2479 265 82 37 chr11 11478257 11478981 -110364875 + Lx7 LINE L1 6327 7082 -614 6 672 1227 142 376 14 chr11 11479002 11479265 -110364591 - RMER6C LTR ERVK -70 686 387 6 672 189 121 0 0 chr11 11479265 11479298 -110364558 + (AACTG)n Simple_repeat Simple_repeat 2 34 0 6 672 1227 133 497 5 chr11 11479298 11479538 -110364318 - RMER6C LTR ERVK -304 386 1 6 672 1357 239 31 80 chr11 11479575 11479961 -110363895 + RMER1B Other Other 44 410 -656 6 672 2006 312 127 34 chr11 11479959 11480107 -110363749 + Lx9 LINE L1 6035 6204 -1269 6 672 234 0 0 0 chr11 11480107 11480133 -110363723 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 672 441 0 0 0 chr11 11480133 11480181 -110363675 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 672 2035 332 94 26 chr11 11480181 11480894 -110362962 + Lx9 LINE L1 6346 7130 -514 6 672 2056 140 0 7 chr11 11480894 11481204 -110362652 - RLTR10E LTR ERVK -3 308 1 6 672 2035 332 94 26 chr11 11481204 11481676 -110362180 + Lx9 LINE L1 7131 7617 -27 6 672 258 260 143 9 chr11 11481719 11481824 -110362032 - L1M4 LINE L1 -278 5896 5778 6 672 191 61 0 29 chr11 11481828 11481862 -110361994 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 672 419 297 159 0 chr11 11481889 11482121 -110361735 + L1MB5 LINE L1 5326 5594 -586 6 672 387 276 51 0 chr11 11482151 11482249 -110361607 - PB1D10 SINE Alu -7 110 8 6 672 264 277 110 55 chr11 11482256 11482416 -110361440 + L1MB5 LINE L1 5599 5763 -411 6 672 520 262 150 31 chr11 11482416 11482609 -110361247 + ID_B1 SINE B4 1 216 -8 6 672 264 277 110 55 chr11 11482609 11482757 -110361099 + L1MB5 LINE L1 5764 5923 -251 6 672 21 36 0 0 chr11 11483161 11483189 -110360667 + AT_rich Low_complexity Low_complexity 1 28 0 6 672 3730 82 20 0 chr11 11483718 11484209 -110359647 + L1_Mus1 LINE L1 6066 6566 -1 6 672 1076 55 0 0 chr11 11484436 11484564 -110359292 + B1_Mm SINE Alu 1 128 -19 6 672 495 0 0 0 chr11 11484566 11484621 -110359235 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 6 672 407 250 64 9 chr11 11484828 11484937 -110358919 + PB1D10 SINE Alu 1 115 -2 6 672 1445 147 5 0 chr11 11485077 11485301 -110358555 + URR1B DNA MER1_type 1 225 0 6 672 2482 166 35 13 chr11 11485911 11486416 -110357440 + Lx4B LINE L1 6522 7020 -38 6 672 249 108 0 0 chr11 11486416 11486453 -110357403 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 6 672 194 0 39 0 chr11 11487185 11487211 -110356645 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 672 430 54 0 0 chr11 11487211 11487267 -110356589 - B1_Mus2 SINE Alu -8 139 84 6 672 532 157 98 0 chr11 11487344 11487446 -110356410 - Lx4A LINE L1 0 7058 6947 6 672 733 136 11 33 chr11 11488015 11488198 -110355658 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 672 1157 81 0 0 chr11 11488686 11488834 -110355022 + B1_Mus1 SINE Alu 1 148 0 6 672 482 247 116 0 chr11 11488852 11488998 -110354858 + RSINE1 SINE B4 3 165 0 6 672 356 257 143 27 chr11 11489019 11489131 -110354725 + B1_Mur1 SINE Alu 4 128 -21 6 672 186 43 0 0 chr11 11489131 11489154 -110354702 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 672 216 0 0 0 chr11 11490580 11490604 -110353252 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 672 1442 190 268 91 chr11 11490606 11491057 -110352799 - MT2A LTR ERVL 0 533 3 6 672 655 355 45 19 chr11 11491069 11491379 -110352477 - MER2B DNA MER2_type -11 325 8 6 672 34 55 0 0 chr11 11491432 11491487 -110352369 + AT_rich Low_complexity Low_complexity 1 55 0 6 672 713 276 64 11 chr11 11491532 11491719 -110352137 + B3 SINE B2 5 201 -15 6 672 27 29 0 0 chr11 11491751 11491785 -110352071 + AT_rich Low_complexity Low_complexity 1 34 0 6 672 11622 46 85 0 chr11 11492338 11494638 -110349218 - L1Md_F2 LINE L1 0 6582 4072 6 672 823 284 79 84 chr11 11494645 11494829 -110349027 - MTE2b LTR MaLR 0 379 178 6 672 832 104 7 7 chr11 11494829 11494964 -110348892 + (TTCC)n Simple_repeat Simple_repeat 3 137 0 6 672 823 284 79 84 chr11 11494964 11495160 -110348696 - MTE2b LTR MaLR -202 177 1 6 672 725 232 194 48 chr11 11495368 11495525 -110348331 + L1_Rod LINE L1 3329 3489 -2358 6 672 366 23 0 0 chr11 11495525 11495568 -110348288 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 672 725 232 194 48 chr11 11495568 11495868 -110347988 + L1_Rod LINE L1 3490 3853 -1994 6 672 3321 41 0 0 chr11 11496181 11496573 -110347283 - L1Md_F2 LINE L1 -8 6574 6183 6 672 44 35 0 0 chr11 11496748 11496806 -110347050 + AT_rich Low_complexity Low_complexity 1 58 0 6 672 404 251 58 97 chr11 11496871 11496934 -110346922 + L1MD3 LINE L1 5693 5748 -2247 6 672 1780 56 0 13 chr11 11496934 11497168 -110346688 - L1Md_F2 LINE L1 -2 6580 6350 6 672 5248 46 2 0 chr11 11497168 11497793 -110346063 + L1Md_F2 LINE L1 5716 6341 -241 6 672 31 0 0 0 chr11 11498077 11498108 -110345748 + AT_rich Low_complexity Low_complexity 1 31 0 6 672 540 30 0 0 chr11 11498449 11498515 -110345341 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 672 207 0 0 0 chr11 11498515 11498537 -110345319 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 672 395 228 11 11 chr11 11498897 11498996 -110344860 + L1_Rod LINE L1 3883 4009 -2134 6 672 4454 149 55 29 chr11 11498996 11499997 -110343859 + L1Md_F LINE L1 214 1226 -5390 6 672 31847 68 31 1 chr11 11500000 11503421 -110340435 + L1Md_F2 LINE L1 1230 4677 -1206 1 672 3268 22 65 11 chr11 11503421 11503793 -110340063 + L1Md_F3 LINE L1 6179 6570 -14 2 672 31847 68 31 1 chr11 11503793 11504601 -110339255 + L1Md_F2 LINE L1 4678 5585 -298 1 672 7132 96 40 8 chr11 11504601 11505555 -110338301 + L1Md_F2 LINE L1 5587 6570 -12 1 672 1224 242 98 32 chr11 11505557 11505965 -110337891 - L1MA8 LINE L1 -47 6244 5806 3 672 411 38 0 0 chr11 11505965 11506018 -110337838 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 672 1224 242 98 32 chr11 11506018 11506048 -110337808 - L1MA8 LINE L1 -486 5805 5777 3 672 201 74 0 0 chr11 11506054 11506081 -110337775 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 672 215 180 48 16 chr11 11506083 11506145 -110337711 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 672 380 191 54 33 chr11 11506145 11506237 -110337619 - L1MA8 LINE L1 -498 5793 5700 3 672 432 0 0 0 chr11 11506250 11506298 -110337558 + (TAA)n Simple_repeat Simple_repeat 2 49 0 7 672 2111 186 11 19 chr11 11506303 11506680 -110337176 + ORR1D1 LTR MaLR 1 374 0 8 672 241 300 40 10 chr11 11506757 11506858 -110336998 - L1MA8 LINE L1 -598 5702 5599 3 672 557 214 0 8 chr11 11507211 11507329 -110336527 + L1_Rod LINE L1 3973 4089 -1758 9 672 2996 79 48 0 chr11 11507354 11507746 -110336110 - RLTR10A LTR ERVK 0 411 1 1 672 931 225 20 10 chr11 11507746 11507940 -110335916 - MTC LTR MaLR -12 409 224 1 672 1523 110 224 7 chr11 11507942 11508339 -110335517 + RLTR47_MM LTR ERV1 1 524 -8 1 672 404 308 47 62 chr11 11508736 11509142 -110334714 + MuRRS4-int LTR ERV1 317 788 -6813 1 672 1346 324 45 39 chr11 11509422 11510253 -110333603 + MuRRS4-int LTR ERV1 990 1825 -3238 1 672 498 264 70 61 chr11 11510476 11510690 -110333166 - B3 SINE B2 0 216 1 1 672 1019 252 149 32 chr11 11510813 11511182 -110332674 + Lx8 LINE L1 7056 7467 -6 1 672 39468 5 0 0 chr11 11511543 11517102 -110326754 + L1Md_A LINE L1 28 5586 -297 1 672 9583 3 0 4 chr11 11517102 11518102 -110325754 + L1Md_A LINE L1 5587 6582 0 1 672 201 74 0 0 chr11 11518134 11518161 -110325695 + (A)n Simple_repeat Simple_repeat 1 27 0 1 672 22 35 0 0 chr11 11518477 11518506 -110325350 + AT_rich Low_complexity Low_complexity 1 29 0 1 672 6326 99 107 6 chr11 11518508 11519565 -110324291 - L1_Mus4 LINE L1 0 6636 5475 1 672 198 0 0 0 chr11 11519857 11519879 -110323977 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 672 411 354 71 38 chr11 11519954 11520350 -110323506 + L1M5 LINE L1 2311 2719 -3427 2 672 1507 289 81 21 chr11 11520363 11520883 -110322973 + Lx8 LINE L1 6921 7471 -2 2 672 26 30 0 0 chr11 11520883 11520916 -110322940 + AT_rich Low_complexity Low_complexity 1 33 0 2 672 1279 61 0 0 chr11 11520924 11521071 -110322785 + B1_Mm SINE Alu 1 147 0 2 672 201 154 0 0 chr11 11521071 11521110 -110322746 + A-rich Low_complexity Low_complexity 1 39 0 2 672 22 0 0 0 chr11 11521170 11521192 -110322664 + AT_rich Low_complexity Low_complexity 1 22 0 2 672 742 315 77 4 chr11 11521377 11521610 -110322246 + B4A SINE B4 39 288 -4 2 672 237 169 0 0 chr11 11521611 11521670 -110322186 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 2 672 2950 83 0 0 chr11 11521826 11522212 -110321644 + L1_Mus1 LINE L1 5732 6117 -450 2 672 2414 84 81 8 chr11 11522204 11522564 -110321292 + L1_Mus1 LINE L1 6252 6637 -1 2 672 282 308 0 11 chr11 11522585 11522677 -110321179 + Lx8 LINE L1 7374 7464 -9 3 672 1112 194 34 10 chr11 11523432 11523640 -110320216 + B3 SINE B2 4 216 0 3 672 353 267 25 110 chr11 11524824 11524960 -110318896 + B3 SINE B2 93 214 -2 3 672 1240 68 0 0 chr11 11525008 11525154 -110318702 + B1_Mus1 SINE Alu 3 148 0 3 672 250 210 103 56 chr11 11525154 11525280 -110318576 + L1MA8 LINE L1 6155 6286 -5 3 672 568 282 136 28 chr11 11525383 11525705 -110318151 - MTEa LTR MaLR 0 370 9 3 672 3264 204 7 61 chr11 11525993 11526696 -110317160 - Lx2B LINE L1 0 7000 6336 3 672 32562 77 2 29 chr11 11526693 11531497 -110312359 + L1Md_F2 LINE L1 276 4999 -884 3 672 3445 29 0 3 chr11 11531497 11531881 -110311975 + L1Md_A LINE L1 6200 6582 0 3 672 32562 69 2 36 chr11 11531881 11532605 -110311251 + L1Md_F2 LINE L1 5000 5586 -297 3 672 8708 41 1 4 chr11 11532605 11533593 -110310263 + L1Md_F2 LINE L1 5587 6571 -11 3 672 3942 161 14 55 chr11 11533597 11533993 -110309863 - Lx2B LINE L1 -663 6337 5958 3 672 2780 55 0 0 chr11 11533993 11534319 -110309537 - L1Md_T LINE L1 0 6582 6257 3 10 10583 130 4 15 chr11 11534319 11536072 -110307784 - Lx2B LINE L1 -1043 5957 4217 3 673 227 108 0 0 chr11 11536065 11536102 -110307754 - Lx2B LINE L1 -2229 3657 3621 3 673 2947 160 177 83 chr11 11536163 11536228 -110307628 - RMER19A LTR ERVK 0 737 677 4 673 1908 160 87 28 chr11 11536228 11536620 -110307236 + RLTR9F LTR ERVK 1 415 0 4 673 2947 160 177 83 chr11 11536620 11537228 -110306628 - RMER19A LTR ERVK -61 676 1 4 673 9180 142 33 37 chr11 11537228 11538975 -110304881 - L1_Mur1 LINE L1 -1714 4172 2434 4 673 1880 194 42 51 chr11 11538971 11539421 -110304435 - L1_Mur1 LINE L1 -5737 1247 802 4 673 233 293 24 0 chr11 11540371 11540453 -110303403 - L1MC4a LINE L1 -452 7590 7507 4 673 1010 284 67 38 chr11 11540461 11540802 -110303054 - ORR1E LTR MaLR -5 354 4 4 673 839 226 121 57 chr11 11540860 11541108 -110302748 - ORR1E LTR MaLR -78 281 18 4 673 510 299 41 18 chr11 11541492 11541710 -110302146 - L1MC4a LINE L1 -997 6885 6663 4 673 5055 154 60 73 chr11 11542313 11543224 -110300632 + RMER19B LTR ERVK 4 902 0 4 673 290 332 116 0 chr11 11543228 11543427 -110300429 - L1MEg LINE L1 -2256 3890 3669 4 673 225 0 0 0 chr11 11543702 11543727 -110300129 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 673 345 24 0 0 chr11 11543975 11544017 -110299839 + (TTG)n Simple_repeat Simple_repeat 2 43 0 4 673 891 221 42 0 chr11 11544079 11544269 -110299587 + MTD LTR MaLR 208 405 -14 5 673 320 251 211 29 chr11 11544845 11545054 -110298802 - L1MEg LINE L1 -4059 2183 1937 4 673 402 253 13 0 chr11 11545064 11545143 -110298713 - ID4 SINE ID -1 82 3 5 673 284 306 64 9 chr11 11545153 11545262 -110298594 - ID_B1 SINE B4 -1 223 109 5 673 304 316 37 25 chr11 11545407 11545569 -110298287 - L1MD1 LINE L1 -1 6241 6078 5 673 633 185 0 0 chr11 11545576 11545684 -110298172 + MTC LTR MaLR 4 111 -310 5 673 25 0 0 0 chr11 11546357 11546382 -110297474 + AT_rich Low_complexity Low_complexity 1 25 0 5 673 333 0 0 0 chr11 11547554 11547591 -110296265 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 673 388 350 25 25 chr11 11547606 11547726 -110296130 - RSINE1 SINE B4 -44 121 2 5 673 210 143 0 0 chr11 11547749 11547784 -110296072 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 673 7347 151 76 28 chr11 11547792 11549418 -110294438 - Lx5 LINE L1 0 7050 5383 5 673 675 118 9 43 chr11 11549414 11549529 -110294327 - Lx5 LINE L1 -775 5102 4992 5 673 243 310 99 10 chr11 11549933 11550034 -110293822 - MIRc SINE MIR -138 130 21 6 673 2951 232 44 132 chr11 11550064 11550491 -110293365 - RMER17B LTR ERVK -116 842 491 6 673 299 73 59 0 chr11 11550491 11550559 -110293297 + (GCTTG)n Simple_repeat Simple_repeat 4 75 0 6 673 2951 213 49 90 chr11 11550559 11551166 -110292690 - RMER17B LTR ERVK -362 596 2 6 673 378 231 181 128 chr11 11551278 11551427 -110292429 - B3A SINE B2 -38 157 1 6 673 700 232 62 24 chr11 11551587 11551795 -110292061 + B3 SINE B2 1 216 0 6 673 348 224 0 0 chr11 11555019 11555153 -110288703 + (TG)n Simple_repeat Simple_repeat 2 135 0 6 673 187 274 80 62 chr11 11555604 11555717 -110288139 - L4 LINE RTE -204 1825 1711 6 673 379 256 0 12 chr11 11555774 11555857 -110287999 - ID2 SINE ID 0 83 2 6 673 219 320 15 46 chr11 11555873 11556004 -110287852 - ID_B1 SINE B4 -10 214 88 6 673 441 205 66 0 chr11 11556096 11556218 -110287638 + L1MA4 LINE L1 6164 6293 -7 6 673 450 0 0 0 chr11 11556907 11556957 -110286899 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 673 276 281 90 0 chr11 11558174 11558263 -110285593 + MER45C DNA Tip100 80 176 -777 7 673 408 71 0 0 chr11 11558386 11558442 -110285414 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 673 317 86 17 0 chr11 11560021 11560079 -110283777 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 673 182 344 15 81 chr11 11562471 11562607 -110281249 - MIR SINE MIR -47 215 89 7 673 231 88 0 0 chr11 11564566 11564600 -110279256 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 7 673 369 215 103 16 chr11 11565734 11565895 -110277961 - L1M5 LINE L1 -761 5479 5293 7 673 227 281 85 57 chr11 11566181 11566358 -110277498 - L1M5 LINE L1 -1463 4683 4502 7 673 3031 43 51 3 chr11 11566802 11567194 -110276662 - RLTR10A LTR ERVK 0 411 1 7 673 306 0 0 0 chr11 11567243 11567277 -110276579 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 673 280 238 93 28 chr11 11567681 11567789 -110276067 - MIR SINE MIR -64 144 30 7 673 28 29 0 0 chr11 11569542 11569577 -110274279 + AT_rich Low_complexity Low_complexity 1 35 0 8 673 218 217 28 28 chr11 11569802 11569873 -110273983 + GA-rich Low_complexity Low_complexity 4 74 0 8 673 313 282 92 76 chr11 11570381 11570565 -110273291 + MER5A DNA MER1_type 2 188 -1 8 673 320 245 17 0 chr11 11570811 11570896 -110272960 + MTEa LTR MaLR 268 365 -14 8 673 268 206 75 2 chr11 11570898 11570974 -110272882 - L1M5 LINE L1 -713 5467 5388 8 673 631 274 145 31 chr11 11571483 11571773 -110272083 + MLT2B1 LTR ERVL 9 331 -189 8 673 21 36 0 0 chr11 11572459 11572487 -110271369 + AT_rich Low_complexity Low_complexity 1 28 0 8 673 210 192 19 0 chr11 11572665 11572717 -110271139 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 673 7111 73 59 6 chr11 11573535 11574757 -110269099 + L1_Mus2 LINE L1 5333 6654 0 8 673 399 343 36 78 chr11 11574758 11575090 -110268766 - ORR1E LTR MaLR -52 318 1 8 673 351 0 0 0 chr11 11575223 11575262 -110268594 + (A)n Simple_repeat Simple_repeat 1 39 0 9 673 196 276 17 33 chr11 11577116 11577176 -110266680 + MIRc SINE MIR 113 171 -91 9 673 219 103 0 0 chr11 11578246 11578285 -110265571 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 9 673 423 0 0 0 chr11 11578901 11578948 -110264908 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 673 261 0 0 0 chr11 11578948 11578976 -110264880 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 673 275 309 96 59 chr11 11579600 11579820 -110264036 - L2 LINE L2 -896 2523 2296 9 673 5793 45 14 0 chr11 11580417 11581112 -110262744 + L1Md_F3 LINE L1 5872 6576 -8 9 673 23 0 0 0 chr11 11581299 11581322 -110262534 + AT_rich Low_complexity Low_complexity 1 23 0 9 673 939 162 0 0 chr11 11581324 11581472 -110262384 - B1_Mus1 SINE Alu 0 148 1 9 673 210 128 0 0 chr11 11581747 11581786 -110262070 + (GTTTG)n Simple_repeat Simple_repeat 1 39 0 9 673 21 0 0 0 chr11 11582084 11582105 -110261751 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 409 273 41 8 chr11 11583138 11583260 -110260596 + ID_B1 SINE B4 94 219 -5 1 673 194 254 58 5 chr11 11583949 11584028 -110259828 - MIR SINE MIR -70 198 117 1 673 45 69 0 0 chr11 11585661 11585748 -110258108 + GC_rich Low_complexity Low_complexity 1 87 0 1 673 23 0 0 0 chr11 11586289 11586312 -110257544 + GC_rich Low_complexity Low_complexity 1 23 0 1 673 381 43 0 0 chr11 11587382 11587429 -110256427 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 673 468 35 0 0 chr11 11588475 11588533 -110255323 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1 673 25 51 0 0 chr11 11588710 11588749 -110255107 + AT_rich Low_complexity Low_complexity 1 39 0 1 673 23 33 0 0 chr11 11589881 11589911 -110253945 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 25 65 0 0 chr11 11592416 11592462 -110251394 + AT_rich Low_complexity Low_complexity 1 46 0 1 673 243 0 0 0 chr11 11593193 11593220 -110250636 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 673 207 0 0 0 chr11 11593220 11593242 -110250614 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 673 244 233 9 110 chr11 11593797 11593923 -110249933 - B1F SINE Alu 0 149 1 1 673 484 291 170 0 chr11 11594052 11594299 -110249557 - B4A SINE B4 -3 289 1 1 673 276 255 17 109 chr11 11595202 11595321 -110248535 + MIR SINE MIR 45 152 -110 1 673 260 250 0 61 chr11 11596285 11596400 -110247456 + GA-rich Low_complexity Low_complexity 2 109 0 1 673 294 29 0 0 chr11 11596869 11596904 -110246952 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 673 690 242 65 0 chr11 11596945 11597098 -110246758 - RSINE1 SINE B4 0 165 3 1 673 285 29 0 0 chr11 11598057 11598091 -110245765 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1 673 696 56 0 0 chr11 11598091 11598179 -110245677 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 1 673 27 62 0 0 chr11 11598772 11598820 -110245036 + AT_rich Low_complexity Low_complexity 1 48 0 1 673 208 272 12 12 chr11 11598840 11598922 -110244934 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 673 665 82 10 0 chr11 11600061 11600158 -110243698 + (TC)n Simple_repeat Simple_repeat 1 98 0 1 673 402 305 66 22 chr11 11602047 11602228 -110241628 + L1MA6 LINE L1 5716 5904 -396 1 673 344 261 66 66 chr11 11602249 11602401 -110241455 + L1MA6 LINE L1 6145 6296 -4 1 673 188 103 0 49 chr11 11602923 11602964 -110240892 + T-rich Low_complexity Low_complexity 5 43 0 1 673 262 284 95 0 chr11 11602964 11603038 -110240818 - ID4_ SINE ID 0 83 3 1 673 185 302 158 33 chr11 11603843 11603963 -110239893 - MIRb SINE MIR -14 254 120 1 673 23 33 0 0 chr11 11605742 11605772 -110238084 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 287 377 31 25 chr11 11610111 11610307 -110233549 + L3b LINE CR1 197 393 -89 1 673 914 167 0 6 chr11 11611220 11611401 -110232455 + CT-rich Low_complexity Low_complexity 1 180 0 1 673 337 283 22 34 chr11 11612637 11612816 -110231040 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 673 205 167 28 47 chr11 11612846 11612953 -110230903 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 1 673 194 193 74 6 chr11 11613130 11613292 -110230564 + (TATG)n Simple_repeat Simple_repeat 4 176 0 1 673 525 318 7 13 chr11 11613504 11613657 -110230199 - RSINE1 SINE B4 -11 154 3 1 673 712 124 132 0 chr11 11615545 11615674 -110228182 + B1_Mus2 SINE Alu 2 147 0 1 673 453 36 0 0 chr11 11617091 11617146 -110226710 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 673 341 173 36 24 chr11 11617246 11617329 -110226527 + MER63D DNA AcHobo 318 401 -660 1 673 297 251 88 68 chr11 11618891 11619083 -110224773 - MER33 DNA MER1_type -71 253 58 1 673 442 294 11 45 chr11 11620034 11620212 -110223644 + CT-rich Low_complexity Low_complexity 2 173 0 1 673 273 224 37 9 chr11 11620244 11620352 -110223504 + CT-rich Low_complexity Low_complexity 2 112 0 1 673 186 263 0 0 chr11 11622489 11622527 -110221329 - L2c LINE L2 -65 3322 3285 1 673 411 156 46 20 chr11 11624660 11624769 -110219087 + PB1D10 SINE Alu 1 110 -7 1 673 378 279 0 0 chr11 11624826 11624905 -110218951 + ID4_ SINE ID 3 81 -2 1 673 327 25 0 0 chr11 11626735 11626775 -110217081 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 673 1380 78 21 16 chr11 11627536 11627730 -110216126 + B2_Mm2 SINE B2 1 195 0 1 673 23 33 0 0 chr11 11629630 11629660 -110214196 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 226 281 24 0 chr11 11630088 11630170 -110213686 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 673 245 324 89 31 chr11 11631252 11631443 -110212413 + MIRb SINE MIR 22 223 -45 1 673 322 284 10 0 chr11 11631721 11631823 -110212033 - LTR90A LTR LTR -7 969 867 1 673 1301 148 9 26 chr11 11632407 11632636 -110211220 - URR1B DNA MER1_type 0 225 1 1 673 245 303 11 33 chr11 11634852 11634944 -110208912 + ID_B1 SINE B4 2 91 -133 1 673 189 286 18 0 chr11 11635411 11635467 -110208389 - MIRc SINE MIR -99 169 113 1 673 513 0 0 0 chr11 11637500 11637557 -110206299 + (TATAA)n Simple_repeat Simple_repeat 5 61 0 1 673 571 238 0 144 chr11 11638009 11638063 -110205793 + B1_Mur2 SINE Alu 1 54 -95 1 673 1039 94 14 0 chr11 11638063 11638201 -110205655 + B1_Mus2 SINE Alu 1 140 -7 1 673 1065 145 0 0 chr11 11638203 11638382 -110205474 + (GAA)n Simple_repeat Simple_repeat 1 179 0 1 673 571 238 0 144 chr11 11638382 11638491 -110205365 + B1_Mur2 SINE Alu 55 143 -6 1 673 480 294 7 34 chr11 11639629 11639774 -110204082 + B4A SINE B4 88 228 -64 1 673 1056 100 6 6 chr11 11639774 11639935 -110203921 + B2_Mm2 SINE B2 1 161 -34 1 673 468 0 0 0 chr11 11639937 11639989 -110203867 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1 673 335 290 9 27 chr11 11641229 11641339 -110202517 - B1F1 SINE Alu 0 149 42 1 673 264 213 0 16 chr11 11641341 11641403 -110202453 + C-rich Low_complexity Low_complexity 5 65 0 1 673 455 61 0 15 chr11 11641420 11641487 -110202369 + L1_Mus2 LINE L1 6501 6566 0 1 673 850 57 16 16 chr11 11641491 11641616 -110202240 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 1 673 279 277 60 12 chr11 11642881 11642965 -110200891 - MamRep1161 DNA TcMar -98 859 772 1 673 256 327 0 71 chr11 11643261 11643373 -110200483 - ID_B1 SINE B4 -9 215 112 1 673 234 116 0 0 chr11 11644751 11644794 -110199062 + (CTCG)n Simple_repeat Simple_repeat 2 44 0 1 673 705 43 0 0 chr11 11645624 11645717 -110198139 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 673 286 242 10 52 chr11 11645769 11645865 -110197991 - MLT1A0 LTR MaLR -5 360 269 1 673 215 276 128 27 chr11 11646699 11646848 -110197008 + MIRb SINE MIR 81 244 -24 1 673 281 170 38 0 chr11 11646971 11647024 -110196832 - MIRm SINE MIR -130 146 92 1 673 259 348 51 13 chr11 11647187 11647344 -110196512 - MER5A DNA MER1_type -26 163 1 1 673 505 237 9 9 chr11 11647375 11647490 -110196366 + B3A SINE B2 1 115 -83 1 673 262 246 16 32 chr11 11648648 11648711 -110195145 + ID4_ SINE ID 2 63 -20 1 673 210 234 0 45 chr11 11653348 11653415 -110190441 + CT-rich Low_complexity Low_complexity 1 64 0 1 673 181 299 29 29 chr11 11654709 11654778 -110189078 + L4 LINE RTE 1047 1115 -914 1 673 1052 181 9 37 chr11 11656737 11656955 -110186901 + B3 SINE B2 5 216 0 1 673 266 288 143 8 chr11 11657298 11657424 -110186432 - MER3 DNA MER1_type -19 190 48 1 673 361 250 0 13 chr11 11658635 11658712 -110185144 + ID4 SINE ID 3 78 -5 1 673 21 0 0 0 chr11 11660381 11660402 -110183454 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 1731 26 0 0 chr11 11662673 11662866 -110180990 + B2_Mm1t SINE B2 1 193 0 1 673 232 243 40 0 chr11 11663861 11663935 -110179921 - HAL1b LINE L1 -84 1925 1849 1 673 328 333 166 7 chr11 11664796 11665074 -110178782 - HAL1b LINE L1 -1184 825 504 1 674 234 0 0 0 chr11 11665871 11665897 -110177959 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 1 674 881 136 11 11 chr11 11665905 11666084 -110177772 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 1 674 294 29 0 0 chr11 11666472 11666507 -110177349 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 674 32 106 0 0 chr11 11668406 11668529 -110175327 + AT_rich Low_complexity Low_complexity 1 123 0 1 674 28 0 0 0 chr11 11668593 11668621 -110175235 + AT_rich Low_complexity Low_complexity 1 28 0 1 674 332 291 94 0 chr11 11671120 11671237 -110172619 - MER20 DNA MER1_type -2 217 90 1 674 560 229 139 10 chr11 11673856 11674050 -110169806 + ID_B1 SINE B4 5 223 -1 1 674 252 302 39 23 chr11 11675332 11675461 -110168395 + MIR SINE MIR 3 133 -129 1 674 288 0 0 0 chr11 11677815 11677847 -110166009 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 674 216 0 0 0 chr11 11678155 11678179 -110165677 + (T)n Simple_repeat Simple_repeat 1 24 0 1 674 1247 27 0 20 chr11 11678179 11678329 -110165527 - B1_Mm SINE Alu 0 147 1 1 674 402 296 38 24 chr11 11679426 11679637 -110164219 + L1MCa LINE L1 2164 2377 -4131 1 674 1798 296 122 31 chr11 11679660 11680519 -110163337 + Lx8 LINE L1 6503 7439 -34 1 674 606 296 8 6 chr11 11680733 11680941 -110162915 + L1MCa LINE L1 2465 2680 -3641 1 674 438 69 0 0 chr11 11681089 11681147 -110162709 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 674 387 0 0 0 chr11 11681149 11681192 -110162664 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 674 456 51 0 0 chr11 11681283 11681342 -110162514 + (TTCTC)n Simple_repeat Simple_repeat 2 60 0 1 674 715 230 0 0 chr11 11681342 11681481 -110162375 - B1_Mus1 SINE Alu -9 139 1 1 674 1486 229 49 52 chr11 11683216 11683622 -110160234 + MTD LTR MaLR 1 405 -14 1 674 293 289 189 7 chr11 11683953 11684096 -110159760 + L1MA4A LINE L1 6124 6292 -11 1 674 329 297 58 122 chr11 11685008 11685196 -110158660 - MER3 DNA MER1_type -33 176 1 2 674 453 245 11 0 chr11 11686744 11686838 -110157018 + B1_Mur2 SINE Alu 1 95 -54 2 674 511 198 0 0 chr11 11686839 11686930 -110156926 + B1_Mur2 SINE Alu 52 142 -7 2 674 214 120 80 0 chr11 11686931 11686981 -110156875 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 674 242 273 0 13 chr11 11687186 11687264 -110156592 + L1_Mur3 LINE L1 1936 2012 -3865 2 674 664 215 0 0 chr11 11687269 11687404 -110156452 + B1_Mus2 SINE Alu 1 135 -12 2 674 535 206 39 46 chr11 11687452 11687605 -110156251 + L1_Mur3 LINE L1 2258 2409 -3471 2 674 930 301 56 20 chr11 11687648 11688004 -110155852 + Lx8 LINE L1 6853 7221 -252 2 674 379 240 107 39 chr11 11688017 11688195 -110155661 + Lx8 LINE L1 7283 7472 -1 2 674 1092 63 35 0 chr11 11688218 11688360 -110155496 + B1_Mus2 SINE Alu 1 147 0 2 674 207 0 0 0 chr11 11688369 11688392 -110155464 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 674 232 271 114 87 chr11 11689489 11689743 -110154113 + L1ME1 LINE L1 5727 5987 -192 2 674 522 292 148 53 chr11 11689829 11690147 -110153709 + MTEa LTR MaLR 18 365 -14 2 674 405 0 0 0 chr11 11690152 11690197 -110153659 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 674 786 241 139 66 chr11 11690234 11690670 -110153186 + RMER5 LTR ERV1 32 499 -35 2 674 1184 92 62 17 chr11 11690729 11690906 -110152950 + B2_Mm2 SINE B2 2 186 -9 2 674 1184 115 0 35 chr11 11690914 11690955 -110152901 + B2_Mm2 SINE B2 2 42 -153 2 674 3239 51 8 0 chr11 11690955 11691348 -110152508 - MTA_Mm LTR MaLR 0 396 1 2 674 1184 115 0 35 chr11 11691348 11691505 -110152351 + B2_Mm2 SINE B2 43 193 -2 2 674 255 61 0 0 chr11 11692288 11692321 -110151535 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 674 186 43 0 0 chr11 11692334 11692357 -110151499 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 674 448 343 75 0 chr11 11692367 11692501 -110151355 + RSINE1 SINE B4 3 146 -19 2 674 282 236 76 68 chr11 11694136 11694254 -110149602 - PB1D7 SINE Alu -1 119 1 2 674 1464 78 5 10 chr11 11694439 11694633 -110149223 + B2_Mm1t SINE B2 1 193 0 2 674 566 247 101 6 chr11 11694710 11694869 -110148987 - B3 SINE B2 -42 174 1 2 674 468 91 0 0 chr11 11695271 11695337 -110148519 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 674 1284 206 123 9 chr11 11695425 11695743 -110148113 - ORR1D2 LTR MaLR -12 358 5 2 674 426 292 69 0 chr11 11695980 11696124 -110147732 - MLT1E2 LTR MaLR -406 221 68 2 674 431 234 104 45 chr11 11696202 11696336 -110147520 - B1_Mur1 SINE Alu -6 143 2 2 674 1359 62 50 11 chr11 11696684 11696865 -110146991 + B2_Mm2 SINE B2 3 190 -5 2 674 400 277 197 24 chr11 11697291 11697580 -110146276 - L1_Rod LINE L1 -695 5152 4814 2 674 1210 62 0 0 chr11 11697683 11697829 -110146027 + B1_Mus2 SINE Alu 2 147 0 2 674 22 35 0 0 chr11 11697880 11697909 -110145947 + AT_rich Low_complexity Low_complexity 1 29 0 2 674 1044 88 7 20 chr11 11697934 11698073 -110145783 + B1_Mus1 SINE Alu 1 140 -8 2 674 186 43 0 0 chr11 11698073 11698096 -110145760 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 674 1263 34 0 0 chr11 11698204 11698351 -110145505 + B1_Mus2 SINE Alu 1 147 0 2 674 922 224 71 0 chr11 11698781 11698977 -110144879 + B3 SINE B2 7 216 0 2 674 668 117 89 9 chr11 11698987 11699099 -110144757 + B1_Mus1 SINE Alu 23 143 -5 2 674 21 36 0 0 chr11 11699099 11699127 -110144729 + AT_rich Low_complexity Low_complexity 1 28 0 2 674 324 320 48 0 chr11 11699303 11699406 -110144450 - B3 SINE B2 -27 189 82 2 674 1068 88 7 0 chr11 11699450 11699597 -110144259 + B1_Mus1 SINE Alu 1 148 0 2 674 189 0 0 0 chr11 11699603 11699624 -110144232 + (A)n Simple_repeat Simple_repeat 1 21 0 2 674 803 185 6 18 chr11 11699640 11699805 -110144051 + B2_Mm2 SINE B2 2 164 -31 2 674 993 76 115 0 chr11 11699811 11699968 -110143888 - B2_Mm2 SINE B2 -20 175 1 2 674 772 252 42 33 chr11 11703378 11703591 -110140265 + ID_B1 SINE B4 2 216 -8 2 674 1040 87 90 23 chr11 11703704 11703881 -110139975 + B2_Mm2 SINE B2 1 189 -6 2 674 410 299 88 23 chr11 11703916 11704132 -110139724 + L1M2 LINE L1 2545 2774 -3369 2 674 883 240 36 68 chr11 11704158 11704316 -110139540 - B4 SINE B4 -49 243 86 2 674 261 0 0 0 chr11 11704322 11704351 -110139505 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 674 1060 84 0 7 chr11 11704351 11704487 -110139369 - B1_Mus1 SINE Alu -11 137 2 2 674 883 240 36 68 chr11 11704487 11704578 -110139278 - B4 SINE B4 -207 85 2 2 674 775 186 118 0 chr11 11704608 11704769 -110139087 + B3A SINE B2 3 182 -16 2 674 975 285 157 8 chr11 11704777 11705262 -110138594 + L1_Mur3 LINE L1 5231 5787 -93 2 674 1244 14 0 0 chr11 11705262 11705402 -110138454 + B1_Mm SINE Alu 1 140 -7 2 674 816 310 108 46 chr11 11705402 11705497 -110138359 + L1MA4 LINE L1 5810 5888 -412 2 674 239 0 32 0 chr11 11705660 11705691 -110138165 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 674 210 203 45 30 chr11 11705996 11706062 -110137794 + MIRc SINE MIR 185 251 -17 2 674 699 175 35 49 chr11 11706816 11706960 -110136896 - B1_Mur3 SINE Alu -7 142 1 2 674 1159 48 0 40 chr11 11707186 11707338 -110136518 + B1_Mus2 SINE Alu 1 146 -1 2 674 407 246 92 17 chr11 11707976 11708096 -110135760 - RSINE1 SINE B4 -36 129 1 2 674 180 0 0 0 chr11 11709503 11709523 -110134333 + (T)n Simple_repeat Simple_repeat 1 20 0 2 674 328 320 38 70 chr11 11710574 11710732 -110133124 + RSINE1 SINE B4 5 157 -8 2 674 961 45 88 22 chr11 11710760 11710897 -110132959 + B1_Mm SINE Alu 2 147 0 2 674 24 32 0 0 chr11 11711713 11711744 -110132112 + AT_rich Low_complexity Low_complexity 1 31 0 2 674 663 230 7 45 chr11 11712249 11712404 -110131452 - B1_Mur3 SINE Alu 0 149 1 2 674 225 108 0 0 chr11 11712554 11712591 -110131265 + (T)n Simple_repeat Simple_repeat 1 37 0 2 674 1296 7 7 0 chr11 11712594 11712740 -110131116 - B1_Mm SINE Alu 0 147 1 2 674 1412 188 210 6 chr11 11712917 11713265 -110130591 + MTD LTR MaLR 1 419 0 2 674 530 241 25 137 chr11 11713383 11713580 -110130276 - MTE2b LTR MaLR -204 175 1 2 674 776 260 31 10 chr11 11713659 11713853 -110130003 + B3A SINE B2 1 198 0 2 674 273 282 26 0 chr11 11714572 11714650 -110129206 + ID4 SINE ID 2 81 -2 2 674 22 0 0 0 chr11 11714651 11714673 -110129183 + AT_rich Low_complexity Low_complexity 1 22 0 2 674 279 0 0 0 chr11 11716452 11716483 -110127373 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 674 819 105 0 0 chr11 11716652 11716766 -110127090 + B2_Mm2 SINE B2 2 115 -80 2 674 1324 81 0 42 chr11 11716767 11716960 -110126896 - B2_Mm2 SINE B2 -9 186 2 2 674 1183 68 0 0 chr11 11716973 11717120 -110126736 - B1_Mm SINE Alu 0 147 1 2 674 495 303 21 126 chr11 11717241 11717479 -110126377 + ID_B1 SINE B4 2 214 -10 2 674 223 300 70 5 chr11 11718469 11718546 -110125310 + Alu_5 SINE Alu 1 89 -28 2 674 216 0 0 0 chr11 11719592 11719616 -110124240 + (A)n Simple_repeat Simple_repeat 1 24 0 2 674 21 36 0 0 chr11 11719661 11719689 -110124167 + AT_rich Low_complexity Low_complexity 1 28 0 2 674 392 248 0 60 chr11 11719964 11720152 -110123704 + B1_Mur1 SINE Alu 6 149 0 2 674 252 0 0 0 chr11 11721574 11721602 -110122254 + (A)n Simple_repeat Simple_repeat 1 28 0 2 674 960 146 89 86 chr11 11721638 11721677 -110122179 + RMER10B LTR ERVL 106 146 -252 2 674 288 0 0 0 chr11 11721677 11721709 -110122147 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 2 674 960 146 89 86 chr11 11721709 11721961 -110121895 + RMER10B LTR ERVL 147 397 -1 2 674 485 224 80 0 chr11 11723317 11723442 -110120414 - B1_Mur1 SINE Alu -5 144 10 2 674 183 42 0 0 chr11 11723588 11723612 -110120244 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 674 22 0 0 0 chr11 11724482 11724504 -110119352 + AT_rich Low_complexity Low_complexity 1 22 0 2 674 340 294 71 28 chr11 11725953 11726135 -110117721 - MER3 DNA MER1_type 0 209 20 2 674 1485 209 51 34 chr11 11726518 11726869 -110116987 + ORR1E LTR MaLR 3 359 0 2 674 690 269 18 18 chr11 11727049 11727126 -110116730 + ID SINE ID 3 79 -145 2 674 323 272 27 72 chr11 11727126 11727237 -110116619 + PB1D7 SINE Alu 1 106 -14 2 674 423 0 0 0 chr11 11727353 11727400 -110116456 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 674 544 191 165 0 chr11 11727562 11727677 -110116179 + B1_Mur4 SINE Alu 1 134 -16 2 674 836 0 98 0 chr11 11727686 11727850 -110116006 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 674 670 62 48 36 chr11 11727853 11728019 -110115837 + (GGAGA)n Simple_repeat Simple_repeat 2 169 0 2 674 188 67 33 0 chr11 11730054 11730084 -110113772 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2 674 670 179 26 0 chr11 11730205 11730356 -110113500 + CT-rich Low_complexity Low_complexity 2 156 0 2 674 330 246 58 17 chr11 11730359 11730533 -110113323 - RMER17C LTR ERVK -138 272 92 2 674 455 294 26 68 chr11 11732504 11732621 -110111235 - PB1 SINE Alu -1 119 8 2 674 214 288 27 0 chr11 11733288 11733361 -110110495 + L2a LINE L2 3095 3169 -257 2 674 1250 34 0 0 chr11 11733810 11733958 -110109898 - B1_Mus1 SINE Alu 0 148 1 2 674 608 279 93 5 chr11 11733994 11734199 -110109657 + MLT1A0 LTR MaLR 139 361 -4 2 674 240 257 53 13 chr11 11734455 11734530 -110109326 + ORR1E LTR MaLR 271 348 -11 2 674 458 131 32 24 chr11 11734674 11734799 -110109057 + (CA)n Simple_repeat Simple_repeat 2 127 0 2 674 36 0 0 0 chr11 11735821 11735857 -110107999 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 22 56 0 0 chr11 11738977 11739013 -110104843 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 259 279 0 0 chr11 11739102 11739163 -110104693 - B3A SINE B2 -120 78 18 3 674 581 255 25 32 chr11 11739896 11740054 -110103802 + MTEa LTR MaLR 3 159 -220 3 674 547 326 98 54 chr11 11740054 11740395 -110103461 + MT2A LTR ERVL 3 523 -10 3 674 1104 243 60 112 chr11 11740511 11740896 -110102960 - MTE2b LTR MaLR -11 368 4 3 674 725 152 16 23 chr11 11741132 11741260 -110102596 + B1_Mur3 SINE Alu 14 140 -9 3 674 252 0 0 0 chr11 11741260 11741288 -110102568 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 674 740 287 36 18 chr11 11741483 11741763 -110102093 + RMER15 LTR ERVL 275 559 -16 3 674 302 326 164 38 chr11 11743130 11743582 -110100274 + MER77 LTR ERVL 92 600 -7 3 674 816 157 96 7 chr11 11745825 11745960 -110097896 - B1_Mus1 SINE Alu -1 147 1 3 674 276 123 0 0 chr11 11746382 11746414 -110097442 + (T)n Simple_repeat Simple_repeat 1 32 0 3 674 1254 34 0 0 chr11 11746414 11746562 -110097294 - B1_Mus1 SINE Alu 0 148 1 3 674 276 123 0 0 chr11 11746562 11746586 -110097270 + (T)n Simple_repeat Simple_repeat 1 24 0 3 674 905 250 9 5 chr11 11746892 11747113 -110096743 + B4A SINE B4 2 223 -69 3 674 978 238 5 0 chr11 11747119 11747321 -110096535 + B3 SINE B2 2 204 -12 3 674 213 65 0 0 chr11 11747321 11747352 -110096504 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 674 414 0 0 0 chr11 11747414 11747460 -110096396 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 674 307 182 14 43 chr11 11747462 11747531 -110096325 + RMER15 LTR ERVL 1 67 -508 3 674 1532 194 188 22 chr11 11747546 11748004 -110095852 + RMER15 LTR ERVL 29 562 -13 3 674 311 260 13 0 chr11 11749272 11749349 -110094507 + RSINE1 SINE B4 1 78 -87 3 674 426 20 0 0 chr11 11749410 11749461 -110094395 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 674 438 20 0 0 chr11 11749461 11749511 -110094345 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 674 3867 175 37 60 chr11 11751920 11752682 -110091174 + Lx7 LINE L1 6652 7401 -295 3 674 222 62 0 0 chr11 11752682 11752714 -110091142 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 674 717 109 227 0 chr11 11752715 11752834 -110091022 - B1_Mus2 SINE Alu -1 146 1 3 674 3867 175 37 60 chr11 11752834 11752852 -110091004 + Lx7 LINE L1 7402 7416 -280 3 674 262 125 49 12 chr11 11752857 11752938 -110090918 + (TG)n Simple_repeat Simple_repeat 2 85 0 3 674 185 146 21 0 chr11 11752953 11753001 -110090855 + CT-rich Low_complexity Low_complexity 2 50 0 3 674 490 223 217 42 chr11 11753019 11753124 -110090732 + Lx7 LINE L1 7324 7433 -263 3 674 204 83 62 0 chr11 11753124 11753172 -110090684 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 674 490 223 217 42 chr11 11753172 11753375 -110090481 + Lx7 LINE L1 7434 7685 -11 3 674 560 269 151 30 chr11 11753375 11753640 -110090216 + MER2B DNA MER2_type 40 336 0 3 674 255 115 127 32 chr11 11753693 11753756 -110090100 + L1M4c LINE L1 2238 2306 -4078 3 674 1546 181 23 3 chr11 11753757 11754061 -110089795 + MTD LTR MaLR 2 311 -108 3 674 514 244 204 12 chr11 11754102 11754264 -110089592 - B3A SINE B2 -4 194 2 3 674 306 149 29 15 chr11 11754264 11754332 -110089524 + MTD LTR MaLR 297 365 -54 3 674 834 53 26 0 chr11 11754328 11754442 -110089414 + B2_Mm1t SINE B2 68 184 -9 3 674 430 319 30 80 chr11 11754549 11754597 -110089259 + L1MC LINE L1 4745 4793 -1353 3 674 1428 84 16 0 chr11 11754597 11754787 -110089069 + B2_Mm2 SINE B2 2 194 -1 3 674 430 319 30 80 chr11 11754787 11755075 -110088781 + L1MC LINE L1 4794 5064 -1082 3 674 274 263 39 13 chr11 11755744 11755821 -110088035 + L1MC LINE L1 5079 5157 -989 3 674 216 0 0 0 chr11 11756684 11756708 -110087148 + (TTGTG)n Simple_repeat Simple_repeat 5 28 0 3 674 343 329 30 54 chr11 11756761 11756928 -110086928 + L1MC LINE L1 5079 5241 -905 3 674 963 261 49 49 chr11 11756977 11757323 -110086533 + ORR1E LTR MaLR 4 349 -10 3 674 243 0 0 0 chr11 11757349 11757376 -110086480 + (A)n Simple_repeat Simple_repeat 1 27 0 3 674 667 295 58 17 chr11 11757387 11757526 -110086330 + Lx8 LINE L1 7195 7335 -138 3 674 230 0 33 0 chr11 11757526 11757556 -110086300 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 674 667 295 58 17 chr11 11757556 11757657 -110086199 + Lx8 LINE L1 7336 7444 -29 3 674 30 27 0 0 chr11 11757674 11757711 -110086145 + AT_rich Low_complexity Low_complexity 1 37 0 3 674 729 254 10 41 chr11 11757722 11757919 -110085937 + B3A SINE B2 1 191 -7 3 674 381 271 52 22 chr11 11757923 11758059 -110085797 + L1MD LINE L1 5343 5482 -877 3 674 268 356 15 0 chr11 11758117 11758249 -110085607 + L1M5 LINE L1 5647 5780 -399 3 674 22 35 0 0 chr11 11758669 11758698 -110085158 + AT_rich Low_complexity Low_complexity 1 29 0 3 674 772 263 53 0 chr11 11758709 11758880 -110084976 - B3A SINE B2 -18 180 1 3 674 28 0 0 0 chr11 11758921 11758949 -110084907 + AT_rich Low_complexity Low_complexity 1 28 0 3 674 330 321 82 57 chr11 11759073 11759246 -110084610 + L1MEg LINE L1 984 1171 -4913 3 674 1149 58 0 0 chr11 11759246 11759384 -110084472 + B1_Mm SINE Alu 1 138 -9 3 674 304 82 33 0 chr11 11759384 11759445 -110084411 + (CAA)n Simple_repeat Simple_repeat 2 64 0 3 674 330 321 82 57 chr11 11759445 11759587 -110084269 + L1MEg LINE L1 1172 1307 -4777 3 674 579 217 108 0 chr11 11759635 11759764 -110084092 + MTE2b LTR MaLR 1 143 -236 3 674 468 225 169 6 chr11 11759881 11760064 -110083792 + B3 SINE B2 1 213 -3 3 674 225 65 0 0 chr11 11760069 11760100 -110083756 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 674 250 245 84 11 chr11 11760124 11760219 -110083637 + L1MEg LINE L1 1394 1495 -4513 3 674 297 0 0 0 chr11 11760245 11760278 -110083578 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 674 323 303 57 25 chr11 11760422 11760581 -110083275 + L1MEg LINE L1 1839 2002 -4082 3 674 349 230 0 75 chr11 11760746 11760840 -110083016 - L1_Rod LINE L1 -973 4874 4788 3 674 1593 233 85 20 chr11 11760970 11761516 -110082340 + Lx7 LINE L1 5031 5644 -2052 3 674 523 155 32 0 chr11 11761527 11761682 -110082174 + (TA)n Simple_repeat Simple_repeat 1 160 0 3 674 678 259 154 16 chr11 11761725 11762131 -110081725 + Lx7 LINE L1 5608 6079 -1381 3 674 271 0 25 25 chr11 11762194 11762234 -110081622 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 674 550 28 0 0 chr11 11762237 11762308 -110081548 - B1_Mur4 SINE Alu 0 150 80 3 674 489 62 0 0 chr11 11762357 11762422 -110081434 + (CTA)n Simple_repeat Simple_repeat 1 65 0 3 674 1092 232 115 32 chr11 11763202 11763540 -110080316 - ORR1D2 LTR MaLR -4 366 1 3 674 781 159 45 0 chr11 11764123 11764255 -110079601 + B1_Mur4 SINE Alu 3 140 -10 3 674 276 143 0 0 chr11 11764277 11764333 -110079523 + (A)n Simple_repeat Simple_repeat 1 56 0 3 674 279 255 9 125 chr11 11765492 11765604 -110078252 + MLT1B LTR MaLR 1 99 -291 3 674 316 274 179 0 chr11 11765623 11765729 -110078127 + B1F1 SINE Alu 17 141 -8 3 674 615 266 96 44 chr11 11765804 11766075 -110077781 + MLT1B LTR MaLR 106 390 0 3 674 1642 37 11 0 chr11 11766298 11766489 -110077367 + B2_Mm1a SINE B2 1 193 0 3 674 1208 56 0 0 chr11 11767101 11767245 -110076611 + B1_Mm SINE Alu 2 145 -2 3 674 252 0 0 0 chr11 11767245 11767273 -110076583 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 674 650 120 6 179 chr11 11767304 11767466 -110076390 + B1_Mur3 SINE Alu 6 139 -10 3 674 270 0 0 0 chr11 11767466 11767496 -110076360 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 674 734 169 15 23 chr11 11767505 11767638 -110076218 + B1_Mur2 SINE Alu 5 136 -13 3 674 450 0 0 0 chr11 11767749 11767799 -110076057 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 674 630 122 0 0 chr11 11767799 11767897 -110075959 + (GA)n Simple_repeat Simple_repeat 2 99 0 3 674 242 292 66 54 chr11 11768734 11768895 -110074961 + MIRb SINE MIR 102 253 -9 3 674 237 208 69 0 chr11 11769581 11769597 -110074259 + ORR1B1-int LTR MaLR 626 648 -861 3 674 666 45 16 2 chr11 11769597 11769704 -110074152 + B1_Mm SINE Alu 2 117 0 3 674 311 22 0 61 chr11 11770048 11770097 -110073759 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 674 438 103 0 0 chr11 11770826 11770904 -110072952 + (TTTA)n Simple_repeat Simple_repeat 1 78 0 3 674 222 37 0 0 chr11 11770918 11770945 -110072911 + (CCCTAA)n Simple_repeat Simple_repeat 2 28 0 3 674 294 234 0 0 chr11 11771098 11771162 -110072694 - ID_B1 SINE B4 -60 164 101 3 674 968 281 98 22 chr11 11771456 11771864 -110071992 + MLT1D LTR MaLR 28 466 -39 3 674 315 0 0 0 chr11 11772094 11772129 -110071727 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 674 792 159 51 0 chr11 11772274 11772412 -110071444 + B1_Mur2 SINE Alu 5 149 0 3 674 288 193 76 17 chr11 11773439 11773551 -110070305 + MLT1A0 LTR MaLR 7 126 -282 3 674 233 135 19 37 chr11 11775626 11775680 -110068176 + A-rich Low_complexity Low_complexity 2 54 0 3 674 1010 95 6 0 chr11 11775702 11775881 -110067975 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 3 674 631 187 23 6 chr11 11775881 11776053 -110067803 + CT-rich Low_complexity Low_complexity 1 175 0 3 674 25 31 0 0 chr11 11776775 11776807 -110067049 + AT_rich Low_complexity Low_complexity 1 32 0 3 674 295 317 23 38 chr11 11777100 11777231 -110066625 + MLT1A0 LTR MaLR 23 151 -214 3 674 26 0 0 0 chr11 11777723 11777749 -110066107 + AT_rich Low_complexity Low_complexity 1 26 0 3 674 240 100 0 0 chr11 11778296 11778336 -110065520 + (C)n Simple_repeat Simple_repeat 1 40 0 3 674 257 27 54 0 chr11 11778794 11778831 -110065025 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 3 674 537 316 36 59 chr11 11781324 11781630 -110062226 + MER82 DNA MER2_type 252 550 -103 3 674 302 219 172 39 chr11 11782040 11782168 -110061688 - MER31B LTR ERV1 -10 456 312 3 674 542 323 99 78 chr11 11782170 11782684 -110061172 - MLT2B3 LTR ERVL -3 551 27 3 674 741 289 48 26 chr11 11783535 11783766 -110060090 + Tigger7 DNA MER2_type 2 237 -2254 3 674 594 51 0 0 chr11 11786287 11786365 -110057491 + (TCCCC)n Simple_repeat Simple_repeat 5 82 0 3 674 252 0 0 0 chr11 11786564 11786592 -110057264 + (T)n Simple_repeat Simple_repeat 1 28 0 3 674 183 80 0 0 chr11 11787983 11788008 -110055848 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 4 674 282 56 0 0 chr11 11789681 11789717 -110054139 + (A)n Simple_repeat Simple_repeat 1 36 0 4 674 272 310 0 65 chr11 11791226 11791495 -110052361 + (CA)n Simple_repeat Simple_repeat 1 251 0 4 674 297 296 14 21 chr11 11791536 11791681 -110052175 + (CA)n Simple_repeat Simple_repeat 1 144 0 4 674 297 333 17 28 chr11 11791660 11791836 -110052020 + (CATA)n Simple_repeat Simple_repeat 2 175 0 4 674 483 18 0 0 chr11 11792143 11792199 -110051657 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 674 247 286 0 8 chr11 11792296 11792379 -110051477 - MIRc SINE MIR -115 161 82 4 674 1237 106 10 41 chr11 11792481 11792677 -110051179 - B2_Mm1t SINE B2 -1 192 3 4 674 22 0 0 0 chr11 11793761 11793783 -110050073 + AT_rich Low_complexity Low_complexity 1 22 0 4 674 625 152 19 0 chr11 11793789 11793894 -110049962 + B1_Mus1 SINE Alu 1 107 -41 4 674 397 258 23 46 chr11 11793894 11793917 -110049939 + ID_B1 SINE B4 82 206 -18 4 674 2157 201 54 10 chr11 11795054 11795556 -110048300 - RLTR11A2 LTR ERVK -3 524 1 4 674 2415 162 136 8 chr11 11795563 11796079 -110047777 + RMER4B LTR ERVK 3 584 -1 4 674 275 97 0 61 chr11 11796196 11796241 -110047615 + T-rich Low_complexity Low_complexity 19 62 0 4 674 900 70 148 0 chr11 11796241 11796369 -110047487 - B1_Mm SINE Alu 0 147 1 4 674 275 97 0 61 chr11 11796369 11796389 -110047467 + T-rich Low_complexity Low_complexity 1 18 0 4 84 1146 50 7 0 chr11 11796407 11796547 -110047309 + B1_Mus1 SINE Alu 2 142 -6 4 675 282 56 0 0 chr11 11796547 11796583 -110047273 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 675 870 145 0 7 chr11 11796610 11796756 -110047100 - B2_Mm2 SINE B2 -48 147 3 4 675 1406 203 79 22 chr11 11796981 11797194 -110046662 - RMER1C Other Other -8 1334 1097 4 675 267 31 0 0 chr11 11797194 11797226 -110046630 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 675 336 24 0 0 chr11 11797226 11797266 -110046590 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 675 387 0 0 0 chr11 11797266 11797308 -110046548 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 675 1406 203 79 22 chr11 11797308 11797409 -110046447 - RMER1C Other Other -246 1096 1002 4 675 248 244 77 55 chr11 11797600 11797691 -110046165 - MIRb SINE MIR -75 193 101 4 675 708 163 0 0 chr11 11799188 11799317 -110044539 + (CA)n Simple_repeat Simple_repeat 1 129 0 4 675 214 357 30 23 chr11 11799439 11799571 -110044285 - L2 LINE L2 -939 2480 2348 4 675 257 316 36 29 chr11 11799839 11799979 -110043877 - MLT2B2 LTR ERVL -299 255 115 4 675 1937 348 89 20 chr11 11799979 11801189 -110042667 - Lx8 LINE L1 -9 7464 6171 4 675 514 257 14 7 chr11 11801373 11801514 -110042342 - MLT2B2 LTR ERVL -364 151 10 4 675 356 264 113 24 chr11 11801545 11801669 -110042187 - MER20 DNA MER1_type -52 167 33 4 675 296 268 78 71 chr11 11801938 11802122 -110041734 - B4 SINE B4 -16 276 82 4 675 685 284 42 60 chr11 11802179 11802513 -110041343 - L1MC LINE L1 -987 5159 4832 4 675 200 111 28 0 chr11 11802750 11802786 -110041070 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 4 675 348 291 99 9 chr11 11802794 11802905 -110040951 - ID_B1 SINE B4 -20 204 84 4 675 1083 86 7 0 chr11 11802988 11803127 -110040729 + B1_Mus2 SINE Alu 1 140 -7 4 675 192 77 0 0 chr11 11803127 11803153 -110040703 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 4 675 3605 190 67 57 chr11 11803449 11803694 -110040162 + ORR1A2-int LTR MaLR 168 404 -1559 4 675 1174 34 0 27 chr11 11803694 11803844 -110040012 - B1_Mm SINE Alu 0 147 2 4 675 3605 190 67 57 chr11 11803844 11803984 -110039872 + ORR1A2-int LTR MaLR 405 581 -1382 4 675 1150 68 0 26 chr11 11803984 11804135 -110039721 + B1_Mm SINE Alu 1 147 0 4 675 3605 190 67 57 chr11 11804135 11804472 -110039384 + ORR1A2-int LTR MaLR 582 887 -1076 4 675 375 78 0 0 chr11 11804472 11804523 -110039333 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 675 3605 190 67 57 chr11 11804523 11804879 -110038977 + ORR1A2-int LTR MaLR 888 1257 -706 4 675 264 285 105 41 chr11 11804879 11805051 -110038805 - RLTR41 LTR ERV1 0 446 264 4 675 4235 106 31 45 chr11 11805402 11806121 -110037735 + ORR1A2-int LTR MaLR 1255 1963 0 4 675 2108 88 6 59 chr11 11806121 11806458 -110037398 + ORR1A2 LTR MaLR 1 319 -8 4 675 757 86 103 8 chr11 11806462 11806579 -110037277 - L1_Mur2 LINE L1 -903 4974 4847 4 675 300 27 0 0 chr11 11806630 11806667 -110037189 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 675 1194 56 0 0 chr11 11806667 11806811 -110037045 - B1_Mus2 SINE Alu -3 144 1 4 675 599 296 12 6 chr11 11806915 11807078 -110036778 - Lx8 LINE L1 -947 6526 6363 4 675 981 184 165 16 chr11 11807082 11807330 -110036526 + MTC LTR MaLR 8 292 -129 4 675 337 284 35 97 chr11 11807444 11807670 -110036186 - Lx8 LINE L1 -1142 6331 6120 4 675 423 0 0 0 chr11 11808095 11808142 -110035714 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 675 1627 32 11 0 chr11 11808373 11808563 -110035293 + B2_Mm1a SINE B2 2 193 0 4 675 1456 211 32 18 chr11 11808591 11808929 -110034927 - Lx8 LINE L1 0 5847 5505 4 675 288 0 0 0 chr11 11808941 11808973 -110034883 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 675 937 85 16 0 chr11 11808973 11809102 -110034754 - B1_Mus1 SINE Alu -12 136 6 4 675 241 70 85 10 chr11 11809209 11809259 -110034597 - B1_Mm SINE Alu 0 150 100 4 675 2003 269 30 129 chr11 11809259 11809497 -110034359 - Lx8 LINE L1 -448 5399 5225 4 675 1166 75 0 0 chr11 11809497 11809644 -110034212 - B1_Mm SINE Alu 0 147 1 4 675 2003 269 30 129 chr11 11809644 11810556 -110033300 - Lx8 LINE L1 -623 5224 4363 4 675 396 298 66 36 chr11 11810591 11810758 -110033098 - B3 SINE B2 -39 177 6 4 675 197 211 0 19 chr11 11810764 11810817 -110033039 + CT-rich Low_complexity Low_complexity 2 53 0 4 675 4045 78 17 2 chr11 11810881 11811419 -110032437 - L1_Mus1 LINE L1 0 6567 6022 4 675 425 197 115 47 chr11 11811419 11811603 -110032253 - L1M3 LINE L1 -1778 4362 4165 4 675 971 78 35 0 chr11 11811622 11811763 -110032093 + B1_Mus2 SINE Alu 2 147 0 4 675 494 222 0 10 chr11 11812114 11812214 -110031642 - Lx8 LINE L1 -1706 4141 4043 4 675 294 306 67 75 chr11 11812231 11812471 -110031385 - MER34A LTR ERV1 -88 483 246 4 675 251 91 0 98 chr11 11812471 11812499 -110031357 + T-rich Low_complexity Low_complexity 28 55 0 4 675 1207 68 0 0 chr11 11812499 11812646 -110031210 - B1_Mus2 SINE Alu 0 147 1 4 675 251 91 0 98 chr11 11812646 11812678 -110031178 + T-rich Low_complexity Low_complexity 1 27 0 4 675 1028 60 97 0 chr11 11812764 11812898 -110030958 - B1_Mus2 SINE Alu 0 147 1 4 675 593 268 85 49 chr11 11812970 11813194 -110030662 - Lx8 LINE L1 -9 7464 7233 4 675 576 271 84 14 chr11 11813211 11813424 -110030432 - Lx8 LINE L1 -1816 4031 3804 4 675 1083 102 0 0 chr11 11813445 11813592 -110030264 - B1_Mus1 SINE Alu 0 148 2 4 675 8031 71 11 9 chr11 11813755 11813831 -110030025 - L1_Mus4 LINE L1 0 6636 6565 4 675 8094 35 5 0 chr11 11813831 11814755 -110029101 - RLTR13B3 LTR ERVK 0 929 1 4 675 16942 91 13 20 chr11 11814755 11816089 -110027767 - L1_Mus4 LINE L1 -72 6564 5248 4 675 234 0 0 0 chr11 11816089 11816115 -110027741 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 675 1181 42 14 0 chr11 11816115 11816258 -110027598 - B1_Mus1 SINE Alu -2 146 2 4 675 16942 144 16 49 chr11 11816258 11818041 -110025815 - L1_Mus4 LINE L1 -636 5247 3483 4 675 1208 54 0 0 chr11 11818041 11818188 -110025668 - B1_Mus2 SINE Alu 0 147 1 4 675 16942 144 16 49 chr11 11818188 11818441 -110025415 - L1_Mus4 LINE L1 -2401 3482 3281 4 675 1254 34 0 0 chr11 11818441 11818587 -110025269 - B1_Mm SINE Alu 0 147 2 4 675 16942 144 16 49 chr11 11818587 11818980 -110024876 - L1_Mus4 LINE L1 -2603 3280 2904 4 675 4858 101 109 13 chr11 11818968 11820204 -110023652 - L1VL4 LINE L1 -1949 1610 237 4 675 349 301 0 0 chr11 11820202 11820314 -110023542 - L1_Mur3 LINE L1 -2068 3812 3700 4 675 2817 74 77 3 chr11 11820474 11820853 -110023003 - MTB_Mm LTR MaLR 0 407 1 4 675 495 321 0 91 chr11 11821015 11821224 -110022632 - ID_B1 SINE B4 0 224 35 4 675 231 283 50 0 chr11 11821185 11821245 -110022611 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 4 675 306 164 0 0 chr11 11821353 11821408 -110022448 + CT-rich Low_complexity Low_complexity 2 56 0 4 675 659 176 56 42 chr11 11821535 11821677 -110022179 - B1_Mur4 SINE Alu -1 149 6 4 675 38 0 0 0 chr11 11822080 11822118 -110021738 + AT_rich Low_complexity Low_complexity 1 38 0 4 675 710 200 229 0 chr11 11822118 11822293 -110021563 - B3 SINE B2 0 216 2 4 675 226 291 81 11 chr11 11823173 11823260 -110020596 - B4 SINE B4 0 292 200 4 675 488 200 140 35 chr11 11823407 11823521 -110020335 + RMER20B LTR ERVK 1 126 -501 4 675 414 281 244 14 chr11 11823662 11823682 -110020174 + RMER20B LTR ERVK 131 148 -479 4 675 426 53 0 0 chr11 11823682 11823739 -110020117 + (CAAT)n Simple_repeat Simple_repeat 3 59 0 4 675 414 285 229 14 chr11 11823739 11823953 -110019903 + RMER20B LTR ERVK 149 413 -103 4 675 714 200 0 8 chr11 11824068 11824199 -110019657 - B1_Mus1 SINE Alu -18 130 1 4 675 351 0 0 0 chr11 11824528 11824567 -110019289 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 675 1233 48 0 0 chr11 11825131 11825278 -110018578 + B1_Mus2 SINE Alu 1 147 0 4 675 269 282 0 82 chr11 11825283 11825419 -110018437 + ID4_ SINE ID 7 127 -25 4 675 291 198 140 70 chr11 11825692 11825709 -110018147 + MTD LTR MaLR 26 38 -383 4 675 216 111 0 0 chr11 11825709 11825745 -110018111 + (TTAG)n Simple_repeat Simple_repeat 2 37 0 4 675 349 189 104 15 chr11 11825745 11825841 -110018015 + MTD LTR MaLR 39 147 -274 4 675 246 232 0 0 chr11 11826149 11826205 -110017651 + MTD LTR MaLR 152 207 -212 4 675 281 178 48 131 chr11 11826218 11826302 -110017554 + PB1D9 SINE Alu 9 85 -35 4 675 485 176 255 50 chr11 11826295 11826456 -110017400 + MTD LTR MaLR 214 407 -12 4 675 726 254 24 85 chr11 11826501 11826807 -110017049 + MTD-int LTR MaLR 63 333 -925 4 675 1226 146 31 22 chr11 11826807 11827031 -110016825 - URR1A DNA MER1_type 0 226 1 4 675 1380 190 20 67 chr11 11827031 11827364 -110016492 + MTD-int LTR MaLR 326 642 -616 4 675 632 158 50 0 chr11 11827361 11827500 -110016356 + MTD-int LTR MaLR 919 1064 -194 4 675 569 238 13 22 chr11 11827484 11827670 -110016186 - B3 SINE B2 -9 184 1 4 675 429 222 138 28 chr11 11827679 11827860 -110015996 + MTD-int LTR MaLR 1058 1258 0 4 675 1079 216 202 26 chr11 11827860 11828212 -110015644 + MTD LTR MaLR 6 419 0 4 675 1365 76 21 11 chr11 11828254 11828441 -110015415 - B2_Mm1t SINE B2 -3 190 2 4 675 382 284 36 9 chr11 11828540 11828650 -110015206 - ID_B1 SINE B4 -9 215 103 4 675 690 300 57 21 chr11 11828956 11829235 -110014621 - B4A SINE B4 -1 291 3 4 675 742 261 79 5 chr11 11829405 11829594 -110014262 - B3 SINE B2 -5 211 9 4 675 650 241 93 10 chr11 11829802 11829995 -110013861 - B4 SINE B4 -16 276 68 4 675 226 263 21 169 chr11 11829952 11830005 -110013851 - MT2B LTR ERVL -314 287 239 4 675 1033 56 14 7 chr11 11830005 11830150 -110013706 + (TTTC)n Simple_repeat Simple_repeat 4 149 0 4 675 226 263 21 169 chr11 11830150 11830238 -110013618 - MT2B LTR ERVL -363 238 167 4 675 444 176 0 0 chr11 11830166 11830240 -110013616 - B1_Mus1 SINE Alu -74 74 1 4 675 411 236 171 16 chr11 11830240 11830303 -110013553 - B4A SINE B4 -208 84 2 4 675 29 0 0 0 chr11 11832840 11832869 -110010987 + AT_rich Low_complexity Low_complexity 1 29 0 4 675 433 228 52 64 chr11 11834493 11834666 -110009190 + L1MC4 LINE L1 6768 6938 -1104 5 675 361 317 86 29 chr11 11834758 11835003 -110008853 + L1MC4 LINE L1 7224 7500 -542 5 675 236 259 0 0 chr11 11835181 11835235 -110008621 + L1MC4 LINE L1 7754 7807 -235 5 675 187 308 47 70 chr11 11838823 11838952 -110004904 - MIR SINE MIR -106 156 31 5 675 454 319 188 19 chr11 11839772 11840028 -110003828 + MER77 LTR ERVL 95 393 -214 5 675 180 0 0 0 chr11 11840030 11840050 -110003806 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 675 198 0 0 0 chr11 11840183 11840205 -110003651 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 5 675 552 183 108 0 chr11 11841252 11841372 -110002484 + RSINE1 SINE B4 3 135 -30 5 675 316 267 93 28 chr11 11843327 11843435 -110000421 - PB1D10 SINE Alu 0 117 3 5 675 274 234 209 105 chr11 11843532 11843723 -110000133 + MER20 DNA MER1_type 6 216 -3 5 675 227 31 31 0 chr11 11844638 11844670 -109999186 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 675 811 265 97 80 chr11 11850145 11850444 -109993412 + MTEa LTR MaLR 1 304 -75 5 675 213 143 0 23 chr11 11852337 11852380 -109991476 + (CAA)n Simple_repeat Simple_repeat 2 43 0 5 675 262 211 0 0 chr11 11854733 11854785 -109989071 + MIRc SINE MIR 100 151 -117 5 675 23 33 0 0 chr11 11856177 11856207 -109987649 + AT_rich Low_complexity Low_complexity 1 30 0 5 675 377 284 73 91 chr11 11856766 11856998 -109986858 - Tigger7 DNA MER2_type -37 2454 2227 5 675 478 301 21 0 chr11 11856991 11857134 -109986722 - Tigger7 DNA MER2_type -2084 407 262 5 675 266 330 17 0 chr11 11857360 11857478 -109986378 - L1ME4a LINE L1 -173 5951 5832 5 675 315 105 0 0 chr11 11858414 11858471 -109985385 + (T)n Simple_repeat Simple_repeat 1 57 0 5 675 21 0 0 0 chr11 11859593 11859614 -109984242 + AT_rich Low_complexity Low_complexity 1 21 0 5 675 236 295 62 0 chr11 11859623 11859735 -109984121 - L1MC4 LINE L1 -1 8041 7923 5 675 458 215 49 8 chr11 11861911 11862033 -109981823 - MTD LTR MaLR -14 405 279 5 675 511 267 70 25 chr11 11862049 11862249 -109981607 - MTD LTR MaLR -210 209 1 5 675 24 91 0 0 chr11 11862969 11863035 -109980821 + AT_rich Low_complexity Low_complexity 1 66 0 5 675 268 254 0 0 chr11 11863174 11863233 -109980623 - ID2 SINE ID -23 60 2 5 675 250 115 19 19 chr11 11866858 11866911 -109976945 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 675 428 235 19 19 chr11 11866955 11867059 -109976797 + RSINE1 SINE B4 21 124 -41 5 675 1190 55 7 0 chr11 11867067 11867213 -109976643 - B1_Mus2 SINE Alu 0 147 1 5 675 243 0 0 0 chr11 11867260 11867287 -109976569 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 675 249 57 0 0 chr11 11867329 11867364 -109976492 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 675 659 284 187 8 chr11 11867719 11868099 -109975757 + L1MB2 LINE L1 5621 6068 -103 5 675 500 276 199 20 chr11 11869992 11870284 -109973572 + Tigger7 DNA MER2_type 2111 2454 -37 5 675 2907 243 108 23 chr11 11870793 11871609 -109972247 + Lx9 LINE L1 6312 7196 -448 5 675 34 42 0 0 chr11 11874197 11874245 -109969611 + AT_rich Low_complexity Low_complexity 1 48 0 5 675 445 295 56 28 chr11 11874256 11874399 -109969457 - RSINE1 SINE B4 -17 148 2 5 675 438 296 95 20 chr11 11875945 11876197 -109967659 + MER2 DNA MER2_type 23 293 -52 5 675 359 41 20 0 chr11 11877263 11877312 -109966544 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 675 201 275 45 81 chr11 11878169 11878280 -109965576 - L2a LINE L2 -6 3420 3314 5 675 444 209 122 0 chr11 11878289 11878428 -109965428 + L1MA6 LINE L1 6145 6300 0 5 675 229 167 0 0 chr11 11879206 11879254 -109964602 + MLT1A0 LTR MaLR 64 111 -254 5 675 373 310 8 0 chr11 11879329 11879458 -109964398 + MLT1A0 LTR MaLR 236 365 0 5 675 1141 68 0 13 chr11 11879539 11879688 -109964168 - B1_Mus1 SINE Alu 0 148 2 5 675 872 236 48 100 chr11 11880079 11880390 -109963466 + ORR1D2 LTR MaLR 49 343 -27 5 675 280 295 102 39 chr11 11880498 11880625 -109963231 + L2b LINE L2 3240 3374 -1 5 675 330 244 81 31 chr11 11882098 11882259 -109961597 + MIR SINE MIR 34 202 -60 5 675 631 260 25 20 chr11 11882749 11882949 -109960907 + L1MB4 LINE L1 5979 6179 -1 5 675 310 184 18 31 chr11 11884144 11884221 -109959635 + ID4 SINE ID 1 77 -6 5 675 315 0 0 0 chr11 11885066 11885101 -109958755 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 675 255 214 143 22 chr11 11885537 11885628 -109958228 - L1MEe LINE L1 -4567 287 186 5 675 22 35 0 0 chr11 11886217 11886246 -109957610 + AT_rich Low_complexity Low_complexity 1 29 0 5 675 976 172 21 11 chr11 11886958 11887146 -109956710 + B2_Mm2 SINE B2 2 191 -4 5 675 431 335 107 22 chr11 11887241 11887558 -109956298 + MER2 DNA MER2_type 1 344 -1 5 675 34 0 0 0 chr11 11887762 11887796 -109956060 + AT_rich Low_complexity Low_complexity 1 34 0 5 675 568 343 37 5 chr11 11888539 11888753 -109955103 - Tigger5 DNA MER2_type -2177 229 9 5 675 348 252 124 13 chr11 11890767 11890920 -109952936 + MER53 DNA hAT 23 192 -1 5 675 383 272 10 0 chr11 11893951 11894054 -109949802 - L1MB7 LINE L1 -61 6123 6020 5 675 1037 260 82 35 chr11 11895767 11896110 -109947746 + ORR1E LTR MaLR 1 359 0 5 675 434 287 28 0 chr11 11896510 11896618 -109947238 + PB1D10 SINE Alu 1 111 -6 5 675 198 91 0 0 chr11 11897029 11897062 -109946794 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 5 675 378 0 0 0 chr11 11897423 11897465 -109946391 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 675 249 278 73 18 chr11 11900961 11901071 -109942785 - MamSINE1 SINE tRNA -154 136 21 5 675 327 281 41 20 chr11 11902310 11902408 -109941448 + PB1D7 SINE Alu 21 120 0 5 675 987 279 143 30 chr11 11902467 11903173 -109940683 + L1M4 LINE L1 4316 5101 -1045 5 675 522 289 30 22 chr11 11903239 11903454 -109940402 + L1M4 LINE L1 5349 5569 -611 5 675 722 319 139 31 chr11 11903580 11904198 -109939658 - Charlie9 DNA MER1_type -1800 957 273 5 675 189 0 0 0 chr11 11904206 11904227 -109939629 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 5 675 215 241 0 0 chr11 11904962 11905016 -109938840 + T-rich Low_complexity Low_complexity 1 54 0 5 675 341 316 17 0 chr11 11905017 11905134 -109938722 - ID_B1 SINE B4 -27 197 79 5 675 929 218 24 5 chr11 11905764 11905971 -109937885 + B3 SINE B2 6 216 0 5 675 627 254 28 7 chr11 11906014 11906157 -109937699 + B1_Mur1 SINE Alu 2 147 -2 5 675 255 31 0 0 chr11 11906212 11906244 -109937612 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 5 675 207 0 0 0 chr11 11907091 11907114 -109936742 + (CAA)n Simple_repeat Simple_repeat 1 23 0 5 675 26 64 0 0 chr11 11907182 11907229 -109936627 + AT_rich Low_complexity Low_complexity 1 47 0 5 675 264 260 13 25 chr11 11908825 11908904 -109934952 - MTE-int LTR MaLR -1339 241 164 5 675 1702 294 114 42 chr11 11908974 11909737 -109934119 + MTE-int LTR MaLR 286 1103 -477 5 675 279 309 134 6 chr11 11910614 11910793 -109933063 + L1MDa LINE L1 1055 1256 -5377 5 675 230 276 79 0 chr11 11911278 11911354 -109932502 - ORR1E LTR MaLR -274 85 4 5 675 295 297 42 67 chr11 11912065 11912184 -109931672 + PB1D10 SINE Alu 1 116 -1 5 675 218 366 9 82 chr11 11912330 11912440 -109931416 + ID_B1 SINE B4 21 122 -102 5 675 920 275 60 39 chr11 11914524 11914619 -109929237 - B4A SINE B4 0 292 207 5 675 985 263 73 39 chr11 11914619 11914975 -109928881 + ORR1D2 LTR MaLR 1 368 -2 5 675 920 275 60 39 chr11 11914975 11915163 -109928693 - B4A SINE B4 -86 206 3 5 675 22 35 0 0 chr11 11915163 11915192 -109928664 + AT_rich Low_complexity Low_complexity 1 29 0 5 675 439 278 54 54 chr11 11916185 11916507 -109927349 - MLT1A1 LTR MaLR -9 399 43 5 675 613 287 10 99 chr11 11917622 11917823 -109926033 + ID_B1 SINE B4 5 187 -37 5 675 458 262 64 74 chr11 11919281 11919483 -109924373 + L1M3 LINE L1 4003 4202 -1938 5 675 292 234 39 13 chr11 11919484 11919562 -109924294 + L1M3 LINE L1 5033 5112 -1034 5 675 256 250 18 0 chr11 11919601 11919657 -109924199 + ID4_ SINE ID 13 69 -14 5 675 324 286 55 0 chr11 11920993 11921084 -109922772 + Tigger7 DNA MER2_type 7 102 -2389 5 675 235 371 48 0 chr11 11921139 11921244 -109922612 + ORR1E LTR MaLR 1 110 -249 5 675 742 208 73 147 chr11 11921630 11921980 -109921876 - ORR1E LTR MaLR -4 375 14 5 675 477 259 94 31 chr11 11922689 11922880 -109920976 - Tigger5 DNA MER2_type -2166 240 38 5 675 23 0 0 0 chr11 11922933 11922956 -109920900 + AT_rich Low_complexity Low_complexity 1 23 0 5 675 497 305 61 0 chr11 11923390 11923521 -109920335 + RSINE1 SINE B4 2 140 -25 5 675 28 29 0 0 chr11 11923535 11923570 -109920286 + AT_rich Low_complexity Low_complexity 1 35 0 5 675 317 152 0 71 chr11 11924368 11924552 -109919304 + (CATCC)n Simple_repeat Simple_repeat 4 174 0 5 675 255 57 27 67 chr11 11924709 11924784 -109919072 + A-rich Low_complexity Low_complexity 1 72 0 5 675 204 111 0 0 chr11 11927341 11927377 -109916479 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 5 675 360 0 0 0 chr11 11927435 11927475 -109916381 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 84 951 276 62 31 chr11 11927481 11927803 -109916053 - MER2 DNA MER2_type -10 335 4 5 676 197 83 28 0 chr11 11927812 11927848 -109916008 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 676 272 269 0 0 chr11 11930224 11930297 -109913559 + ID SINE ID 15 87 -205 5 676 22 0 0 0 chr11 11930555 11930577 -109913279 + AT_rich Low_complexity Low_complexity 1 22 0 5 676 219 36 0 0 chr11 11930904 11930932 -109912924 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 676 219 382 15 0 chr11 11932559 11932627 -109911229 + ID4 SINE ID 5 73 -10 5 676 405 258 22 36 chr11 11933911 11934048 -109909808 + L1M5 LINE L1 2928 3062 -3084 5 676 342 152 0 0 chr11 11934260 11934319 -109909537 + A-rich Low_complexity Low_complexity 1 59 0 5 676 28 29 0 0 chr11 11934735 11934770 -109909086 + AT_rich Low_complexity Low_complexity 1 35 0 5 676 344 310 131 6 chr11 11935455 11935630 -109908226 + MIRc SINE MIR 64 260 -8 6 676 42 71 0 0 chr11 11936938 11937022 -109906834 + GC_rich Low_complexity Low_complexity 1 84 0 6 676 22 35 0 0 chr11 11937045 11937074 -109906782 + GC_rich Low_complexity Low_complexity 1 29 0 6 676 29 47 0 0 chr11 11937109 11937152 -109906704 + GC_rich Low_complexity Low_complexity 1 43 0 6 676 308 238 24 12 chr11 11937442 11937527 -109906329 + C-rich Low_complexity Low_complexity 4 89 0 6 676 23 97 0 0 chr11 11937535 11937607 -109906249 + GC_rich Low_complexity Low_complexity 1 72 0 6 676 27 73 0 0 chr11 11937662 11937717 -109906139 + GC_rich Low_complexity Low_complexity 1 55 0 6 676 228 273 51 25 chr11 11939551 11939630 -109904226 + L3 LINE CR1 2076 2156 -2333 6 676 392 288 141 92 chr11 11940080 11940363 -109903493 + ORR1E LTR MaLR 1 297 -62 6 676 246 62 0 0 chr11 11940365 11940397 -109903459 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 676 219 36 0 0 chr11 11940448 11940476 -109903380 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 6 676 1288 279 119 44 chr11 11941433 11942234 -109901622 - L1ME1 LINE L1 -15 6164 5304 6 676 560 14 14 0 chr11 11942285 11942354 -109901502 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 676 326 279 41 35 chr11 11942369 11942566 -109901290 - L1ME1 LINE L1 -969 5177 4980 6 676 190 373 67 17 chr11 11944759 11944879 -109898977 - MIRb SINE MIR -58 210 85 6 676 329 336 46 23 chr11 11946206 11946337 -109897519 + MIRb SINE MIR 5 138 -130 6 676 311 221 133 31 chr11 11946417 11946515 -109897341 - MLT1G3 LTR MaLR -22 573 466 6 676 372 261 87 45 chr11 11946519 11946832 -109897024 - MTEa LTR MaLR 0 379 18 6 676 683 192 114 8 chr11 11947038 11947169 -109896687 + RSINE1 SINE B4 2 146 -19 6 676 424 269 91 61 chr11 11947630 11947828 -109896028 + MTEa LTR MaLR 176 379 0 6 676 227 300 123 57 chr11 11947980 11948086 -109895770 + MLT1A1 LTR MaLR 255 367 -41 6 676 23 0 0 0 chr11 11948538 11948561 -109895295 + AT_rich Low_complexity Low_complexity 1 23 0 6 676 254 292 0 0 chr11 11948781 11948846 -109895010 - L1M5 LINE L1 -419 5754 5690 6 676 563 305 110 72 chr11 11949372 11949718 -109894138 + ORR1E LTR MaLR 1 359 0 6 676 314 292 52 44 chr11 11950238 11950374 -109893482 - ORR1E LTR MaLR -221 138 2 6 676 839 313 71 12 chr11 11950878 11951217 -109892639 - MLT1B LTR MaLR -24 366 8 6 676 1421 115 0 5 chr11 11951399 11951591 -109892265 - B2_Mm2 SINE B2 -3 192 2 6 676 252 0 0 0 chr11 11951603 11951631 -109892225 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 6 676 745 295 72 10 chr11 11951631 11951826 -109892030 - Lx5 LINE L1 -16 7034 6828 6 676 393 75 0 0 chr11 11951846 11951899 -109891957 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 676 198 0 0 0 chr11 11951942 11951964 -109891892 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 676 1758 255 89 29 chr11 11951964 11952583 -109891273 - Lx9 LINE L1 -128 7516 6861 6 676 584 319 122 73 chr11 11952753 11953179 -109890677 - MLT2B3 LTR ERVL -107 447 1 6 676 208 0 62 0 chr11 11953216 11953248 -109890608 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 676 342 0 0 0 chr11 11953756 11953794 -109890062 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 676 293 140 0 17 chr11 11953794 11953852 -109890004 + GA-rich Low_complexity Low_complexity 2 58 0 6 676 811 223 31 13 chr11 11954147 11954306 -109889550 - U1 snRNA snRNA -3 162 1 6 676 207 364 45 9 chr11 11954306 11954417 -109889439 + MER5A DNA MER1_type 35 149 -40 6 676 213 303 39 26 chr11 11956089 11956167 -109887689 + MER5A DNA MER1_type 1 79 -110 6 676 278 305 72 1 chr11 11957178 11957285 -109886571 + B1F SINE Alu 2 114 -35 6 676 903 181 227 6 chr11 11957287 11957459 -109886397 + B3 SINE B2 1 210 -6 6 676 340 250 128 20 chr11 11957842 11957944 -109885912 + MER5A DNA MER1_type 1 113 -76 6 676 598 354 48 51 chr11 11958015 11958390 -109885466 - MT2A LTR ERVL -156 377 4 6 676 1563 237 31 59 chr11 11958398 11958788 -109885068 + MTE2a LTR MaLR 1 379 0 6 676 327 306 201 23 chr11 11958800 11959014 -109884842 + MLT1A0 LTR MaLR 95 346 -19 6 676 248 338 38 24 chr11 11959243 11959455 -109884401 - L1MEc LINE L1 -4374 2026 1812 6 676 875 260 101 90 chr11 11959935 11960281 -109883575 + ORR1E LTR MaLR 8 357 -2 6 676 243 254 0 35 chr11 11961228 11961285 -109882571 - B1F SINE Alu -8 141 87 6 676 503 287 131 11 chr11 11961796 11961972 -109881884 + B3A SINE B2 2 198 0 6 676 186 279 103 0 chr11 11962015 11962083 -109881773 + MIRb SINE MIR 125 199 -69 6 676 450 320 75 42 chr11 11962372 11962584 -109881272 - MIR SINE MIR -23 239 21 6 676 498 282 124 82 chr11 11963131 11963478 -109880378 + MLT1A0 LTR MaLR 1 404 -4 6 676 257 344 32 11 chr11 11965048 11965142 -109878714 - BC1_Mm scRNA scRNA -55 97 2 6 676 326 23 23 0 chr11 11965368 11965411 -109878445 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 676 743 259 83 4 chr11 11965603 11965832 -109878024 + MER2 DNA MER2_type 93 339 -6 6 676 464 293 56 30 chr11 11965937 11966148 -109877708 - MLT1C LTR MaLR -153 314 91 6 676 479 197 99 60 chr11 11967541 11967692 -109876164 + MLT1A1 LTR MaLR 252 408 0 6 676 273 307 0 0 chr11 11967692 11967767 -109876089 - MER58B DNA MER1_type -1 340 266 6 676 370 339 75 0 chr11 11967790 11967976 -109875880 - MER58B DNA MER1_type -122 219 20 6 676 1878 116 0 18 chr11 11968709 11968990 -109874866 + ORR1A4 LTR MaLR 54 329 0 6 676 631 272 91 30 chr11 11970164 11970361 -109873495 + MER3 DNA MER1_type 1 209 0 6 676 269 236 0 0 chr11 11970318 11970373 -109873483 - MER3 DNA MER1_type -119 90 36 6 676 1156 259 101 23 chr11 11970511 11970779 -109873077 + Lx9 LINE L1 7198 7484 -160 6 676 378 61 0 0 chr11 11970779 11970828 -109873028 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 676 1156 259 101 23 chr11 11970828 11970954 -109872902 + Lx9 LINE L1 7485 7623 -21 6 676 387 305 61 0 chr11 11971376 11971507 -109872349 - MLT1C LTR MaLR -8 459 321 6 676 378 154 0 30 chr11 11971751 11971818 -109872038 + MTD LTR MaLR 14 78 -343 6 676 889 175 17 17 chr11 11971842 11972016 -109871840 + MTD LTR MaLR 232 405 -14 6 676 396 0 0 0 chr11 11972189 11972233 -109871623 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 676 234 0 0 0 chr11 11974100 11974126 -109869730 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 676 584 273 85 28 chr11 11974802 11975013 -109868843 - MLT1B LTR MaLR -165 225 3 6 676 340 215 142 47 chr11 11976648 11976775 -109867081 - L1MA4 LINE L1 -362 5938 5789 6 676 294 374 63 19 chr11 11977907 11978114 -109865742 + MIR SINE MIR 32 247 -15 6 676 917 137 25 12 chr11 11978398 11978561 -109865295 - URR1A DNA MER1_type -1 225 61 6 676 191 336 14 71 chr11 11978792 11978933 -109864923 + L3 LINE CR1 2554 2686 -1803 6 676 266 191 86 0 chr11 11979346 11979422 -109864434 + MER102b DNA MER1_type 252 340 -1 6 676 221 182 71 18 chr11 11979722 11979778 -109864078 + L3 LINE CR1 3565 3623 -866 6 676 3408 173 38 11 chr11 11979994 11980619 -109863237 - RLTR26 LTR ERVK 0 642 1 6 676 4013 105 2 13 chr11 11980622 11980637 -109863219 - MERVK26-int LTR ERVK -1 6918 6904 6 676 873 29 0 0 chr11 11980637 11980741 -109863115 + (TTCCC)n Simple_repeat Simple_repeat 3 106 0 6 676 501 17 0 0 chr11 11980741 11980799 -109863057 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 6 676 4013 105 2 13 chr11 11980799 11981330 -109862526 - MERVK26-int LTR ERVK -16 6903 6378 6 676 1246 75 73 17 chr11 11981323 11981500 -109862356 - MERVK26-int LTR ERVK -1547 5372 5186 6 676 313 239 84 0 chr11 11981559 11981630 -109862226 + ID4 SINE ID 2 78 -5 6 676 21 0 0 0 chr11 11981696 11981717 -109862139 + AT_rich Low_complexity Low_complexity 1 21 0 6 676 2259 284 82 50 chr11 11982599 11983428 -109860428 + Lx8 LINE L1 6449 7304 -169 6 676 2898 276 113 96 chr11 11983519 11984382 -109859474 - L1M2 LINE L1 -1097 5046 4109 6 676 398 116 308 43 chr11 11984382 11984499 -109859357 - B2_Mm2 SINE B2 -1 194 47 6 676 2898 276 113 96 chr11 11984499 11984569 -109859287 - L1M2 LINE L1 -1097 4108 4031 6 676 1367 91 11 0 chr11 11984569 11984744 -109859112 - B2_Mm1t SINE B2 -14 179 3 6 676 2898 276 113 96 chr11 11984744 11986162 -109857694 - L1M2 LINE L1 -2113 4030 2538 6 676 485 235 0 48 chr11 11986330 11986433 -109857423 - PB1 SINE Alu -1 126 29 6 676 24 32 0 0 chr11 11986825 11986856 -109857000 + AT_rich Low_complexity Low_complexity 1 31 0 6 676 207 167 0 45 chr11 11987840 11987884 -109855972 + A-rich Low_complexity Low_complexity 4 45 0 6 676 406 314 78 0 chr11 11988169 11988322 -109855534 + LTR33C LTR ERVL 11 175 -454 6 676 1526 241 90 71 chr11 11988655 11988983 -109854873 + MT2A LTR ERVL 1 329 -204 6 676 1508 75 11 0 chr11 11988983 11989170 -109854686 - B2_Mm1t SINE B2 -3 190 2 6 676 1526 241 90 71 chr11 11989170 11989364 -109854492 + MT2A LTR ERVL 330 533 0 6 676 298 285 15 0 chr11 11990560 11990636 -109853220 + ID4_ SINE ID 16 92 -60 6 676 270 0 0 0 chr11 11992024 11992054 -109851802 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 676 370 323 125 31 chr11 11992109 11992365 -109851491 - MLT1H1 LTR MaLR -1 554 275 6 676 456 304 202 19 chr11 11992374 11992582 -109851274 + ORR1E LTR MaLR 2 247 -112 6 676 226 293 124 57 chr11 11992698 11992803 -109851053 - MLT1H1 LTR MaLR -460 119 8 6 676 1607 225 81 12 chr11 11992951 11993297 -109850559 + ORR1D2 LTR MaLR 1 370 0 6 676 333 241 136 29 chr11 11993394 11993501 -109850355 + MTE2b LTR MaLR 2 105 -274 6 676 9771 48 2 2 chr11 11993502 11995423 -109848433 - L1Md_F2 LINE L1 0 6582 4664 6 676 8084 42 7 18 chr11 11995413 11996414 -109847442 - L1Md_F2 LINE L1 -1 6581 5592 6 676 27398 68 3 0 chr11 11996408 12000000 -109843856 - L1_Mm LINE L1 -1028 4855 1254 6 676 7638 99 3 24 chr11 12000000 12001179 -109842677 - L1Md_F LINE L1 -5471 1253 99 1 676 8646 139 85 56 chr11 12001188 12003719 -109840137 - L1_Mur2 LINE L1 -2605 3272 668 2 676 560 254 28 0 chr11 12003769 12003911 -109839945 - Lx9 LINE L1 -260 7384 7239 3 676 1492 252 39 6 chr11 12003986 12004477 -109839379 + L1_Mur3 LINE L1 4150 4656 -1224 4 676 3657 282 59 80 chr11 12004477 12006004 -109837852 + L1_Mur3 LINE L1 1278 2839 -3041 5 676 1237 241 134 11 chr11 12006004 12006377 -109837479 - MTD LTR MaLR 0 419 1 6 676 3657 282 59 80 chr11 12006377 12006516 -109837340 + L1_Mur3 LINE L1 2840 2984 -2896 5 676 409 321 107 0 chr11 12006516 12006647 -109837209 - B1_Mur1 SINE Alu -4 145 1 7 676 3657 282 59 80 chr11 12006647 12007445 -109836411 + L1_Mur3 LINE L1 2985 3819 -2061 5 676 407 277 46 93 chr11 12007439 12007698 -109836158 + L1_Mur3 LINE L1 4120 4366 -1514 5 676 1110 314 70 27 chr11 12008366 12009416 -109834440 + L1_Mur3 LINE L1 1238 2332 -3548 8 676 1909 288 92 68 chr11 12009532 12009998 -109833858 + Lx8 LINE L1 6372 6812 -661 9 676 1758 142 23 70 chr11 12009998 12010340 -109833516 + ORR1A3 LTR MaLR 1 326 0 1 676 1909 288 92 68 chr11 12010340 12010378 -109833478 + Lx8 LINE L1 6813 6850 -623 9 676 189 0 0 0 chr11 12010378 12010399 -109833457 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 676 1909 288 92 68 chr11 12010399 12010944 -109832912 + Lx8 LINE L1 6851 7446 -27 9 676 268 286 49 61 chr11 12010944 12011026 -109832830 + B4A SINE B4 198 278 -14 1 676 576 0 0 0 chr11 12011121 12011185 -109832671 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 676 352 333 0 9 chr11 12011264 12011373 -109832483 + MER21B LTR ERV1 1 108 -755 1 676 842 343 70 16 chr11 12011663 12012048 -109831808 + MER21B LTR ERV1 430 835 -28 1 676 1257 257 35 7 chr11 12012123 12012413 -109831443 + MTEb LTR MaLR 82 379 0 1 676 279 0 0 0 chr11 12012534 12012565 -109831291 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 676 605 262 89 106 chr11 12013674 12013956 -109829900 - MER5C DNA MER1_type 0 313 37 1 676 352 326 57 28 chr11 12014053 12014230 -109829626 - MER89 LTR ERV1 -249 310 129 1 676 249 324 36 9 chr11 12015629 12015741 -109828115 + MIR SINE MIR 117 231 -31 1 676 299 349 94 25 chr11 12016199 12016443 -109827413 + MamRep434 DNA TcMar 2 262 -164 2 676 228 204 20 20 chr11 12016882 12016932 -109826924 - MTEb LTR MaLR -62 317 268 2 676 623 264 8 8 chr11 12017099 12017131 -109826725 + ID SINE ID 49 80 -144 2 676 410 307 70 16 chr11 12017131 12017260 -109826596 + B1F1 SINE Alu 1 136 -13 2 676 6038 73 6 0 chr11 12017260 12018107 -109825749 - L1_Mm LINE L1 -1020 4863 4012 2 676 478 255 0 0 chr11 12018107 12018205 -109825651 - Lx6 LINE L1 -263 7197 7100 2 676 3114 209 42 50 chr11 12018199 12018939 -109824917 - Lx6 LINE L1 -585 6875 6142 2 676 6517 66 6 0 chr11 12018939 12019778 -109824078 - L1Md_F2 LINE L1 -1 6581 5738 2 676 14388 82 11 15 chr11 12019778 12021936 -109821920 - L1Md_F2 LINE L1 -772 5111 2964 2 676 5170 87 20 13 chr11 12021926 12023303 -109820553 - L1Md_F2 LINE L1 -3913 1970 584 2 676 402 233 50 57 chr11 12023316 12023457 -109820399 - Lx6 LINE L1 -1308 6152 6013 2 676 856 302 53 3 chr11 12023530 12024042 -109819814 + L1M2 LINE L1 3485 4080 -2063 2 676 282 363 64 23 chr11 12024070 12024335 -109819521 + Lx8 LINE L1 7023 7298 -175 2 676 501 17 0 0 chr11 12024386 12024444 -109819412 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 676 244 170 0 0 chr11 12024576 12024623 -109819233 + Lx8 LINE L1 7417 7463 -10 3 676 184 255 0 41 chr11 12024993 12025091 -109818765 + CT-rich Low_complexity Low_complexity 4 97 0 3 676 1618 281 63 26 chr11 12025718 12026321 -109817535 - Lx8 LINE L1 -6 7467 6843 3 676 771 125 7 0 chr11 12026321 12026457 -109817399 + L1_Mus2 LINE L1 6430 6566 0 3 676 1256 286 43 58 chr11 12026454 12026890 -109816966 - Lx8 LINE L1 -616 6857 6416 3 676 2389 205 169 5 chr11 12026890 12027523 -109816333 - RMER19A LTR ERVK 0 737 1 3 676 1256 286 43 58 chr11 12027523 12027620 -109816236 - Lx8 LINE L1 -1058 6415 6332 3 676 189 0 0 0 chr11 12027625 12027646 -109816210 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 676 1184 240 98 19 chr11 12028395 12028713 -109815143 + ORR1D2 LTR MaLR 4 346 -24 3 676 378 0 0 0 chr11 12028995 12029037 -109814819 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 676 33782 36 1 0 chr11 12029196 12034989 -109808867 + L1Md_T LINE L1 1 5589 -297 3 676 8952 9 0 0 chr11 12034989 12035985 -109807871 + L1Md_T LINE L1 5590 6585 0 3 676 351 0 0 0 chr11 12036278 12036317 -109807539 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 3 676 459 270 113 0 chr11 12036406 12036565 -109807291 + Lx8 LINE L1 6830 7006 -467 4 676 259 271 255 7 chr11 12036588 12036729 -109807127 + Lx8 LINE L1 7063 7238 -235 4 676 2338 60 3 0 chr11 12036742 12037044 -109806812 - L1Md_F2 LINE L1 -3 6579 6277 4 676 2265 65 3 10 chr11 12037044 12037352 -109806504 - L1Md_F2 LINE L1 0 6582 6277 4 676 11881 28 1 0 chr11 12037357 12039512 -109804344 - L1Md_A LINE L1 0 6582 4427 4 676 39401 6 0 0 chr11 12039514 12046094 -109797762 - L1Md_A LINE L1 0 6582 1 4 676 5418 48 1 16 chr11 12046083 12047134 -109796722 - L1Md_A LINE L1 -5972 752 1 4 676 25466 34 0 14 chr11 12047137 12051203 -109792653 - L1Md_A LINE L1 -1441 4442 440 4 676 479 257 99 24 chr11 12051198 12051409 -109792447 + Lx8 LINE L1 7224 7450 -23 4 676 7532 133 53 14 chr11 12051736 12053618 -109790238 + Lx2B LINE L1 5031 6987 -13 4 676 216 200 0 0 chr11 12054335 12054380 -109789476 + T-rich Low_complexity Low_complexity 1 45 0 4 676 6755 72 14 21 chr11 12054393 12055563 -109788293 - L1_Mus2 LINE L1 -7 6559 5398 4 676 1321 106 10 0 chr11 12055554 12055762 -109788094 - L1_Mus2 LINE L1 -1206 4677 4468 4 676 1127 96 6 22 chr11 12055762 12055944 -109787912 - B2_Mm2 SINE B2 -16 179 1 5 84 8348 97 37 3 chr11 12055944 12058652 -109785204 - L1Md_F LINE L1 -455 3459 487 5 677 2304 218 25 13 chr11 12058650 12059270 -109784586 - L1Md_F LINE L1 -5411 1108 95 5 677 2311 246 43 37 chr11 12059305 12059590 -109784266 - L1_Rod LINE L1 -2358 3489 3198 5 677 556 133 9 0 chr11 12059590 12059695 -109784161 - Lx9 LINE L1 -7 7637 7532 5 677 2311 246 43 37 chr11 12059695 12060271 -109783585 - L1_Rod LINE L1 -2650 3197 2623 5 677 452 260 291 46 chr11 12060736 12061152 -109782704 + Charlie12 DNA MER1_type 624 1141 -1732 5 677 478 270 27 9 chr11 12061172 12061284 -109782572 - PB1D10 SINE Alu 0 117 4 5 677 8593 38 1 2 chr11 12061426 12063091 -109780765 - L1Md_F3 LINE L1 0 6584 4920 5 677 1257 276 90 11 chr11 12063273 12063819 -109780037 - L1MC1 LINE L1 -366 5967 5379 5 677 354 217 0 42 chr11 12063914 12063986 -109779870 - B4 SINE B4 -10 282 214 5 677 258 325 0 8 chr11 12064065 12064189 -109779667 - Lx8 LINE L1 -2 7471 7349 6 677 2318 299 59 9 chr11 12064242 12065006 -109778850 - Lx8 LINE L1 -333 7140 6339 6 677 660 111 0 0 chr11 12065118 12065217 -109778639 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 677 534 30 0 0 chr11 12065639 12065705 -109778151 + MTB LTR MaLR 335 400 0 6 677 234 282 201 35 chr11 12065706 12065875 -109777981 + MLT1B LTR MaLR 1 197 -193 6 677 1328 121 71 0 chr11 12067031 12067271 -109776585 - MusHAL1 LINE L1 -1793 919 663 6 677 540 242 18 63 chr11 12067271 12067384 -109776472 - RSINE1 SINE B4 -56 109 1 5 677 232 310 58 33 chr11 12069204 12069324 -109774532 - MLT1A0 LTR MaLR -240 125 3 6 677 552 95 41 21 chr11 12069693 12069790 -109774066 - L1_Mus3 LINE L1 -7 6631 6533 6 677 806 330 8 12 chr11 12069988 12070233 -109773623 - B4A SINE B4 -47 245 2 6 677 1294 292 29 13 chr11 12070347 12070722 -109773134 + Tigger7 DNA MER2_type 30 410 -2081 6 677 527 96 12 0 chr11 12072971 12073054 -109770802 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 6 677 522 193 22 29 chr11 12073069 12073208 -109770648 + Lx8 LINE L1 7334 7471 -2 7 677 3033 56 42 3 chr11 12074305 12074683 -109769173 + L1_Mus3 LINE L1 6239 6631 -7 7 677 3708 52 32 4 chr11 12074736 12075198 -109768658 - Lx3_Mus LINE L1 -7 7002 6528 7 677 226 47 22 44 chr11 12075567 12075612 -109768244 + (TTTTTG)n Simple_repeat Simple_repeat 6 49 0 7 677 279 368 0 0 chr11 12075733 12075828 -109768028 + ID_B1 SINE B4 115 209 -15 7 677 322 303 53 63 chr11 12076017 12076329 -109767527 - L1MEg LINE L1 -4700 1500 1205 7 677 5930 77 66 12 chr11 12076337 12077180 -109766676 - RMER17D LTR ERVK 0 889 1 7 677 1999 173 121 19 chr11 12077185 12077614 -109766242 - Lx5 LINE L1 0 7050 6578 7 677 183 42 0 0 chr11 12077752 12077776 -109766080 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 7 677 1807 249 23 32 chr11 12077776 12078299 -109765557 - Lx3C LINE L1 -10 6966 6449 7 677 2682 153 30 17 chr11 12078309 12078773 -109765083 + L1_Mur2 LINE L1 4776 5245 -632 8 677 231 94 0 0 chr11 12078747 12078779 -109765077 + L1M LINE L1 5255 5286 -908 8 677 258 281 16 0 chr11 12079058 12079122 -109764734 + B4A SINE B4 81 145 -147 8 677 485 247 11 0 chr11 12079072 12079165 -109764691 + PB1D10 SINE Alu 11 104 -13 8 677 1885 193 28 3 chr11 12079567 12079921 -109763935 + Lx7 LINE L1 6752 7114 -582 8 677 255 31 0 0 chr11 12079953 12079985 -109763871 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 677 553 188 76 23 chr11 12080020 12080151 -109763705 + Lx7 LINE L1 7559 7696 0 8 677 530 305 55 35 chr11 12080424 12080679 -109763177 - Lx8 LINE L1 -83 7390 7131 8 677 23 0 0 0 chr11 12080963 12080986 -109762870 + AT_rich Low_complexity Low_complexity 1 23 0 8 677 678 85 0 0 chr11 12081023 12081117 -109762739 + (CATAC)n Simple_repeat Simple_repeat 2 95 0 8 677 261 259 12 24 chr11 12081119 12081202 -109762654 - L1MEc LINE L1 -3570 2749 2668 8 677 1347 42 0 0 chr11 12081211 12081377 -109762479 + (CA)n Simple_repeat Simple_repeat 2 167 0 9 677 249 163 0 0 chr11 12082038 12082087 -109761769 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 677 360 43 0 0 chr11 12082087 12082133 -109761723 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 677 335 303 11 11 chr11 12082167 12082257 -109761599 - PB1D10 SINE Alu -2 115 26 9 677 182 269 69 88 chr11 12082324 12082426 -109761430 + L2a LINE L2 3265 3364 -62 9 677 880 237 79 87 chr11 12082504 12082883 -109760973 - MTE2a LTR MaLR -3 376 1 9 677 382 301 80 21 chr11 12083001 12083188 -109760668 - MLT2C1 LTR ERVL -83 314 117 9 677 511 289 73 104 chr11 12083254 12083706 -109760150 - L1MEc LINE L1 -5033 1367 930 8 677 220 245 0 31 chr11 12083724 12083821 -109760035 + (TATG)n Simple_repeat Simple_repeat 4 97 0 9 677 474 206 17 34 chr11 12083856 12084032 -109759824 + (TATG)n Simple_repeat Simple_repeat 2 174 0 9 677 251 241 0 54 chr11 12084051 12084200 -109759656 + (TATG)n Simple_repeat Simple_repeat 4 144 0 9 677 288 327 173 9 chr11 12084203 12084428 -109759428 + RMER12 LTR ERVK 737 998 -324 9 677 385 367 122 13 chr11 12085095 12085407 -109758449 - L1MEc LINE L1 -5975 425 80 8 677 809 315 64 24 chr11 12085665 12086015 -109757841 - ORR1E LTR MaLR -2 377 1 9 677 198 229 42 0 chr11 12086525 12086573 -109757283 + L2a LINE L2 3117 3166 -260 1 677 239 321 91 21 chr11 12086800 12086943 -109756913 + MIRb SINE MIR 76 228 -40 1 677 248 208 38 0 chr11 12088237 12088290 -109755566 + CT-rich Low_complexity Low_complexity 2 56 0 1 677 3733 65 2 0 chr11 12089424 12089867 -109753989 - L1_Mus1 LINE L1 -2 6565 6122 1 677 898 212 0 0 chr11 12090041 12090187 -109753669 - B1_Mus2 SINE Alu -1 146 1 1 677 466 267 79 0 chr11 12090406 12090571 -109753285 - L1MA5 LINE L1 -74 6226 6049 1 677 213 342 107 70 chr11 12091714 12091956 -109751900 - L2c LINE L2 0 3387 3137 1 677 430 278 52 0 chr11 12092273 12092370 -109751486 - PB1D10 SINE Alu -47 102 1 1 677 21 0 0 0 chr11 12093002 12093023 -109750833 + AT_rich Low_complexity Low_complexity 1 21 0 1 677 796 238 90 0 chr11 12093065 12093254 -109750602 + B3 SINE B2 11 216 0 1 677 237 286 25 64 chr11 12093463 12093620 -109750236 + L1MD LINE L1 2697 2847 -3299 1 677 415 319 43 16 chr11 12094365 12094553 -109749303 - MER58B DNA MER1_type 0 341 149 1 677 495 328 129 43 chr11 12095189 12095575 -109748281 - MLT1E1A LTR MaLR -42 638 187 1 677 3823 68 34 8 chr11 12095818 12096296 -109747560 - L1Md_F2 LINE L1 -2 6580 6091 1 677 384 330 69 52 chr11 12096362 12096653 -109747203 - L1MEf LINE L1 -5230 970 675 1 677 22 35 0 0 chr11 12097264 12097293 -109746563 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 21 0 0 0 chr11 12097481 12097502 -109746354 + AT_rich Low_complexity Low_complexity 1 21 0 1 677 324 0 0 0 chr11 12097502 12097538 -109746318 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 677 202 211 0 0 chr11 12097544 12097582 -109746274 + GA-rich Low_complexity Low_complexity 5 42 0 1 677 258 32 0 0 chr11 12101934 12101965 -109741891 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 677 797 280 72 54 chr11 12102004 12102283 -109741573 - B4 SINE B4 -4 288 5 1 677 257 359 49 59 chr11 12103164 12103368 -109740488 + ORR1E LTR MaLR 4 205 -154 1 677 243 235 0 42 chr11 12104907 12104978 -109738878 - MLT1A1 LTR MaLR -12 396 329 1 677 666 249 55 45 chr11 12104998 12105269 -109738587 + L1M2 LINE L1 5125 5398 -791 1 677 990 170 0 4 chr11 12106044 12106280 -109737576 + CT-rich Low_complexity Low_complexity 1 235 0 1 677 3199 194 104 47 chr11 12106871 12107811 -109736045 - Lx4B LINE L1 -5 6995 6020 1 677 679 226 58 17 chr11 12108063 12108347 -109735509 + L1_Mur3 LINE L1 1481 1781 -4066 1 677 724 222 0 0 chr11 12108349 12108475 -109735381 - B1_Mur3 SINE Alu -21 128 3 1 677 1785 304 55 43 chr11 12108481 12108580 -109735276 + L1_Mur3 LINE L1 1766 1859 -4021 1 677 315 0 0 0 chr11 12108580 12108615 -109735241 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1 677 1785 304 55 43 chr11 12108615 12109483 -109734373 + L1_Mur3 LINE L1 1860 2744 -3136 1 677 1900 212 51 4 chr11 12109484 12109934 -109733922 + Lx7 LINE L1 5718 6188 -1508 1 677 1456 87 87 5 chr11 12109934 12110142 -109733714 + L1Md_F2 LINE L1 6353 6577 -5 1 677 2163 79 0 0 chr11 12110176 12110443 -109733413 - L1_Mus1 LINE L1 0 6567 6301 1 677 230 57 0 54 chr11 12110443 12110480 -109733376 + L1_Mus1 LINE L1 6269 6303 -335 1 677 762 93 0 0 chr11 12110617 12110725 -109733131 + (TTCC)n Simple_repeat Simple_repeat 3 110 0 1 677 296 271 28 28 chr11 12110778 12110850 -109733006 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 1 677 369 0 0 0 chr11 12111262 12111303 -109732553 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 677 466 246 135 32 chr11 12111304 12111430 -109732426 - RSINE1 SINE B4 -24 141 3 1 677 225 271 100 79 chr11 12111635 12111775 -109732081 - L1MC4 LINE L1 -1022 7020 6878 1 677 432 172 0 0 chr11 12112478 12112565 -109731291 + CT-rich Low_complexity Low_complexity 5 91 0 1 677 725 231 37 24 chr11 12112565 12112729 -109731127 - B3A SINE B2 -28 170 5 1 677 759 146 193 25 chr11 12112849 12112920 -109730936 + Lx9 LINE L1 7404 7502 -142 1 677 228 35 0 0 chr11 12112920 12112949 -109730907 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 677 759 146 193 25 chr11 12112949 12113074 -109730782 + Lx9 LINE L1 7503 7632 -12 1 677 3283 48 2 8 chr11 12113677 12114075 -109729781 + MTA_Mm LTR MaLR 1 396 0 1 677 510 235 171 5 chr11 12114591 12114796 -109729060 - MER2 DNA MER2_type 0 345 107 1 677 195 281 0 30 chr11 12114872 12114938 -109728918 - MIR SINE MIR -65 197 134 1 677 243 300 14 0 chr11 12115089 12115159 -109728697 + MLT1B LTR MaLR 14 84 -306 1 677 235 229 0 22 chr11 12115265 12115345 -109728511 + A-rich Low_complexity Low_complexity 1 78 0 1 677 264 309 57 0 chr11 12115356 12115499 -109728357 + MLT1B LTR MaLR 235 465 -2 1 677 243 281 67 10 chr11 12115601 12115705 -109728151 + MamRep1879 DNA hAT? 58 167 -49 1 677 465 280 99 41 chr11 12116113 12116355 -109727501 - MLT1F-int LTR MaLR -33 1456 1201 1 677 262 268 103 55 chr11 12116360 12116506 -109727350 + MLT1C LTR MaLR 2 154 -313 1 677 265 368 52 17 chr11 12116557 12116731 -109727125 + MLT1C LTR MaLR 285 464 -3 1 677 225 192 139 13 chr11 12116769 12116848 -109727008 + MTE2b LTR MaLR 1 89 -290 1 677 225 314 150 23 chr11 12116848 12116942 -109726914 + MLT2B3 LTR ERVL 1 195 -359 1 677 259 306 16 0 chr11 12117093 12117155 -109726701 - Charlie12 DNA MER1_type -2804 69 7 1 677 5388 64 1 3 chr11 12117800 12118485 -109725371 + L1Md_F2 LINE L1 4903 5586 -297 1 677 6655 79 77 6 chr11 12118486 12119403 -109724453 + L1Md_F2 LINE L1 5588 6570 -12 1 677 405 262 19 84 chr11 12119972 12120126 -109723730 + MER5A DNA MER1_type 46 189 0 1 677 256 366 0 0 chr11 12120478 12120491 -109723365 - RSINE1 SINE B4 -69 96 4 1 677 563 100 0 0 chr11 12120491 12120571 -109723285 - B2_Mm2 SINE B2 -113 82 3 1 677 2328 127 83 0 chr11 12121448 12121811 -109722045 - ORR1B1 LTR MaLR 0 394 2 1 677 394 340 84 25 chr11 12121989 12122191 -109721665 + LTR16C LTR ERVL 62 275 -214 1 677 622 295 86 14 chr11 12123180 12123400 -109720456 + B4 SINE B4 46 281 -11 1 677 354 253 0 12 chr11 12123711 12123791 -109720065 - ID4 SINE ID -2 81 3 1 677 254 283 70 10 chr11 12124092 12124192 -109719664 + PB1D7 SINE Alu 5 110 -10 1 677 214 268 0 0 chr11 12124228 12124284 -109719572 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 1 677 1305 110 130 0 chr11 12126907 12127107 -109716749 + URR1A DNA MER1_type 1 226 0 1 677 509 256 295 7 chr11 12128142 12128437 -109715419 + L1MA4 LINE L1 5399 5778 -534 1 677 360 0 0 0 chr11 12128437 12128477 -109715379 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 677 384 108 57 16 chr11 12128477 12128600 -109715256 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 677 716 268 42 113 chr11 12128601 12129096 -109714760 + L1MA4 LINE L1 5785 6277 -23 1 677 471 234 86 21 chr11 12129109 12129249 -109714607 + B1_Mur1 SINE Alu 1 149 0 1 677 298 310 62 0 chr11 12129252 12129365 -109714491 + PB1 SINE Alu 1 120 -7 1 677 4214 35 0 0 chr11 12130350 12130838 -109713018 - L1Md_T LINE L1 0 6582 6095 1 677 456 262 33 7 chr11 12133036 12133186 -109710670 + GA-rich Low_complexity Low_complexity 2 155 0 1 677 222 37 0 0 chr11 12133453 12133480 -109710376 + (A)n Simple_repeat Simple_repeat 1 27 0 1 677 275 298 94 97 chr11 12136295 12136578 -109707278 + MTEa LTR MaLR 57 364 -15 1 677 285 167 0 0 chr11 12139282 12139336 -109704520 + (CAGA)n Simple_repeat Simple_repeat 2 55 0 1 677 384 267 77 30 chr11 12139637 12139814 -109704042 - L1ME2 LINE L1 -291 5873 5683 1 677 314 172 40 0 chr11 12140122 12140221 -109703635 + (TG)n Simple_repeat Simple_repeat 1 103 0 1 677 481 277 175 39 chr11 12140250 12140458 -109703398 - L1MEc LINE L1 -2653 3666 3452 1 677 513 32 0 0 chr11 12140458 12140521 -109703335 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 1 677 481 277 175 39 chr11 12140521 12140928 -109702928 - L1MEc LINE L1 -2868 3451 2969 1 677 339 306 178 24 chr11 12141072 12141537 -109702319 - L1MEc LINE L1 -5580 820 275 1 677 1902 144 185 6 chr11 12141537 12141894 -109701962 + MTC LTR MaLR 1 421 0 1 677 339 306 178 24 chr11 12141894 12141934 -109701922 - L1MEc LINE L1 -6126 274 237 1 677 264 59 0 0 chr11 12142065 12142099 -109701757 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 677 2595 57 48 5 chr11 12142099 12142471 -109701385 + MTB LTR MaLR 13 400 0 1 677 291 312 40 77 chr11 12142848 12142993 -109700863 + L1ME2z LINE L1 6119 6268 -176 1 677 377 224 120 20 chr11 12142993 12143093 -109700763 + PB1D10 SINE Alu 2 111 -6 1 677 291 312 40 77 chr11 12143093 12143273 -109700583 + L1ME2z LINE L1 6269 6432 -12 1 677 369 235 65 81 chr11 12147779 12147964 -109695892 - Tigger7 DNA MER2_type -32 2459 2278 1 677 814 276 51 7 chr11 12149995 12150269 -109693587 + MLT1A0 LTR MaLR 73 358 -7 1 677 563 265 64 60 chr11 12151295 12151560 -109692296 + Tigger5 DNA MER2_type 2140 2405 -1 1 677 196 224 17 30 chr11 12151690 12151766 -109692090 + MIR SINE MIR 82 152 -124 1 677 301 257 64 12 chr11 12152695 12152790 -109691066 + MTEb LTR MaLR 255 365 -14 1 677 222 312 58 33 chr11 12157274 12157398 -109686458 - MIRb SINE MIR -56 206 82 1 677 615 285 42 28 chr11 12158923 12159136 -109684720 - B4 SINE B4 -74 218 3 1 677 22 35 0 0 chr11 12159144 12159173 -109684683 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 246 235 99 0 chr11 12161033 12161114 -109682742 - MER33 DNA MER1_type -16 308 220 1 677 230 293 24 12 chr11 12161167 12161250 -109682606 - MER33 DNA MER1_type -235 89 6 1 677 1261 287 30 59 chr11 12161863 12162355 -109681501 - Lx8 LINE L1 -6 7467 6990 1 677 222 270 0 0 chr11 12164262 12164336 -109679520 + CT-rich Low_complexity Low_complexity 1 74 0 1 677 252 0 0 0 chr11 12164354 12164382 -109679474 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 677 2939 86 8 0 chr11 12164669 12165054 -109678802 - L1_Mus1 LINE L1 -6 6561 6174 1 677 616 235 130 11 chr11 12165069 12165111 -109678745 - B3 SINE B2 -9 207 159 1 677 414 0 0 0 chr11 12165111 12165157 -109678699 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 677 616 235 130 11 chr11 12165157 12165299 -109678557 - B3 SINE B2 -58 158 1 1 677 233 250 159 0 chr11 12165737 12165825 -109678031 + Charlie8 DNA MER1_type 26 127 -2301 1 677 3578 64 2 4 chr11 12165909 12166367 -109677489 + L1_Mus2 LINE L1 6110 6566 0 1 677 271 295 13 0 chr11 12167393 12167471 -109676385 - ID4 SINE ID -4 79 1 1 677 507 173 9 0 chr11 12167583 12167693 -109676163 + Lx9 LINE L1 7491 7601 -43 2 677 288 244 25 13 chr11 12168611 12168690 -109675166 - PB1D10 SINE Alu -37 80 1 2 677 1097 251 102 28 chr11 12168733 12169086 -109674770 + MTEa LTR MaLR 1 379 0 2 677 1540 225 43 14 chr11 12169692 12170061 -109673795 + ORR1C2 LTR MaLR 1 380 -4 2 677 1200 58 0 0 chr11 12171635 12171789 -109672067 + B2_Mm2 SINE B2 1 154 -41 2 677 297 0 0 0 chr11 12171790 12171823 -109672033 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 677 471 18 0 0 chr11 12171859 12171915 -109671941 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 677 324 0 0 0 chr11 12171915 12171950 -109671906 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 677 1129 291 64 78 chr11 12173048 12174041 -109669815 - Charlie2b DNA MER1_type -59 2723 1776 2 677 235 317 105 37 chr11 12174047 12174237 -109669619 - Charlie2b DNA MER1_type -2464 318 116 2 677 23 68 0 0 chr11 12176082 12176126 -109667730 + AT_rich Low_complexity Low_complexity 1 44 0 2 677 690 293 91 53 chr11 12176497 12176969 -109666887 - L1_Rod LINE L1 -12 5835 5346 2 677 2454 67 3 9 chr11 12176987 12177318 -109666538 + L1Md_F2 LINE L1 6241 6569 -13 2 677 740 104 0 0 chr11 12177353 12177468 -109666388 - Lx LINE L1 -432 5451 5337 2 677 6510 102 37 5 chr11 12177462 12178473 -109665383 + Lx LINE L1 5604 6646 -8 2 677 449 303 24 15 chr11 12178509 12178774 -109665082 - L1M2 LINE L1 -792 5351 5053 2 677 540 246 76 0 chr11 12179019 12179137 -109664719 + B1_Mur1 SINE Alu 2 128 -21 2 677 1031 76 0 33 chr11 12179358 12179508 -109664348 + B1_Mus1 SINE Alu 3 147 -1 2 677 1364 219 174 3 chr11 12179717 12180056 -109663800 + MTD LTR MaLR 23 419 0 2 677 187 299 29 43 chr11 12180238 12180308 -109663548 - MIRb SINE MIR -62 206 138 2 677 474 359 37 25 chr11 12180321 12180484 -109663372 + RSINE1 SINE B4 1 165 0 2 677 281 345 86 77 chr11 12180692 12181018 -109662838 + L4 LINE RTE 997 1325 -704 2 677 477 143 47 16 chr11 12181483 12181812 -109662044 + (TCTA)n Simple_repeat Simple_repeat 1 339 0 2 677 484 292 57 25 chr11 12181813 12181971 -109661885 - RSINE1 SINE B4 0 165 3 2 677 209 250 74 62 chr11 12183954 12184035 -109659821 + MER5A DNA MER1_type 18 99 -90 2 677 1386 242 89 7 chr11 12184738 12185142 -109658714 + ERVL-int LTR ERVL 4806 5242 -515 2 677 343 274 0 0 chr11 12185443 12185545 -109658311 + ERVL-int LTR ERVL 5631 5732 -25 2 677 283 323 31 80 chr11 12185789 12185980 -109657876 + MLT2B1 LTR ERVL 375 526 -29 2 677 720 256 103 14 chr11 12185993 12186207 -109657649 + MER2 DNA MER2_type 86 318 -27 2 677 387 0 0 0 chr11 12187341 12187384 -109656472 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 677 1115 305 48 12 chr11 12187898 12188415 -109655441 + L1MB2 LINE L1 5631 6166 -5 2 677 628 298 92 36 chr11 12189389 12189692 -109654164 + MLT1B LTR MaLR 62 381 -9 2 678 344 242 154 13 chr11 12190094 12190216 -109653640 + MIR SINE MIR 79 206 -56 2 678 1023 241 83 6 chr11 12190553 12190863 -109652993 + ORR1E LTR MaLR 5 360 -19 2 678 203 293 40 0 chr11 12191138 12191237 -109652619 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 2 678 306 0 0 0 chr11 12191258 12191292 -109652564 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 678 180 337 108 0 chr11 12191379 12191462 -109652394 + MIR3 SINE MIR 79 170 -38 2 678 234 0 0 0 chr11 12191961 12191987 -109651869 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 678 234 222 0 0 chr11 12192833 12192887 -109650969 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 678 990 41 0 0 chr11 12194873 12194995 -109648861 + B1_Mus1 SINE Alu 27 148 0 2 678 296 119 17 0 chr11 12195237 12195296 -109648560 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 678 554 286 91 38 chr11 12196894 12197181 -109646675 - Lx8 LINE L1 -1 7472 7171 2 678 490 239 30 23 chr11 12197951 12198084 -109645772 - MER63C DNA AcHobo -102 828 695 2 678 1980 298 74 18 chr11 12198105 12198932 -109644924 - Lx8 LINE L1 -585 6888 6016 2 678 1020 296 108 10 chr11 12198970 12199468 -109644388 + Lx8 LINE L1 6927 7473 0 2 678 278 363 0 11 chr11 12199490 12199582 -109644274 - MER63C DNA AcHobo -828 102 12 2 678 279 281 113 9 chr11 12200426 12200541 -109643315 - U2 snRNA snRNA -61 127 1 2 678 24 0 0 0 chr11 12200717 12200741 -109643115 + AT_rich Low_complexity Low_complexity 1 24 0 2 678 752 314 95 14 chr11 12201777 12202061 -109641795 - Tigger7 DNA MER2_type -2126 365 59 2 678 795 340 144 19 chr11 12202815 12203301 -109640555 - MLT1F2 LTR MaLR -1 559 13 2 678 1831 27 0 9 chr11 12203556 12203780 -109640076 + L1Md_F3 LINE L1 6361 6582 -2 2 678 760 182 175 11 chr11 12205736 12205919 -109637937 - B3 SINE B2 0 216 4 2 678 295 231 38 19 chr11 12208061 12208167 -109635689 + (TTTA)n Simple_repeat Simple_repeat 1 108 0 2 678 519 252 94 81 chr11 12208167 12208327 -109635529 - RSINE1 SINE B4 -1 164 3 2 678 234 214 36 0 chr11 12208964 12209020 -109634836 - MER46C DNA MER2_type -17 321 264 2 678 23 33 0 0 chr11 12209066 12209096 -109634760 + AT_rich Low_complexity Low_complexity 1 30 0 2 678 21 36 0 0 chr11 12209111 12209139 -109634717 + AT_rich Low_complexity Low_complexity 1 28 0 2 678 21 71 0 0 chr11 12210759 12210801 -109633055 + AT_rich Low_complexity Low_complexity 1 42 0 2 678 1085 97 0 7 chr11 12211023 12211169 -109632687 + B1_Mus2 SINE Alu 1 145 -2 2 678 234 91 0 0 chr11 12211170 12211203 -109632653 + (A)n Simple_repeat Simple_repeat 1 33 0 2 678 26 0 0 0 chr11 12212319 12212345 -109631511 + AT_rich Low_complexity Low_complexity 1 26 0 2 678 1498 104 5 5 chr11 12212464 12212687 -109631169 - L1Md_F2 LINE L1 -12 6570 6348 2 678 579 73 0 17 chr11 12212690 12212787 -109631069 + L1Md_F2 LINE L1 5913 6000 -636 2 678 45 0 0 0 chr11 12213307 12213352 -109630504 + AT_rich Low_complexity Low_complexity 1 45 0 2 678 267 310 26 0 chr11 12213424 12213540 -109630316 - L1MA7 LINE L1 -9 6282 6164 2 678 229 128 64 0 chr11 12215077 12215124 -109628732 + T-rich Low_complexity Low_complexity 2 51 0 2 678 723 344 115 28 chr11 12215321 12215937 -109627919 + L1MA7 LINE L1 982 1651 -4733 2 678 1134 301 75 46 chr11 12215937 12216595 -109627261 - L1M3 LINE L1 -1049 5091 4415 2 678 393 296 62 92 chr11 12216595 12216676 -109627180 + L1MA7 LINE L1 5353 5424 -955 2 678 702 35 0 0 chr11 12216676 12216761 -109627095 + (GA)n Simple_repeat Simple_repeat 2 86 0 2 678 393 296 62 92 chr11 12216761 12216951 -109626905 + L1MA7 LINE L1 5425 5616 -763 2 678 2458 85 50 5 chr11 12217184 12217562 -109626294 + L1_Mus3 LINE L1 6224 6618 -20 2 678 323 290 96 32 chr11 12217747 12218028 -109625828 + L1MA7 LINE L1 6228 6526 -1 2 678 294 152 51 0 chr11 12218067 12218126 -109625730 + MTD LTR MaLR 351 412 -7 2 678 3303 253 102 45 chr11 12218518 12218672 -109625184 + Lx8 LINE L1 6194 6382 -1091 2 678 396 0 0 0 chr11 12218672 12218716 -109625140 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 678 3303 253 102 45 chr11 12218716 12219765 -109624091 + Lx8 LINE L1 6383 7465 -8 2 678 406 298 104 47 chr11 12219775 12220198 -109623658 + L1MB3 LINE L1 5546 5992 -191 2 678 471 243 115 0 chr11 12220282 12220430 -109623426 - B3 SINE B2 0 216 52 2 678 248 269 33 107 chr11 12220936 12221057 -109622799 - PB1D7 SINE Alu -8 112 1 2 678 207 312 93 10 chr11 12221982 12222001 -109621855 - MIRc SINE MIR -90 178 157 2 678 391 308 20 34 chr11 12222001 12222149 -109621707 - RSINE1 SINE B4 -16 149 4 2 678 234 312 93 10 chr11 12222149 12222226 -109621630 - MIR SINE MIR -112 156 71 2 678 783 277 51 63 chr11 12222572 12222888 -109620968 + MLT1A0 LTR MaLR 1 312 -53 2 678 234 329 158 0 chr11 12223431 12223589 -109620267 + MIR SINE MIR 37 219 -43 2 678 1171 224 19 4 chr11 12223835 12224091 -109619765 - Lx9 LINE L1 -616 7028 6769 2 678 308 193 0 17 chr11 12224129 12224187 -109619669 + HAL1-3A_ME LINE L1 1976 2032 -826 2 678 598 237 282 21 chr11 12224282 12224587 -109619269 + Lx9 LINE L1 7062 7464 -180 2 678 2139 67 30 16 chr11 12224587 12224892 -109618964 + L1Md_F2 LINE L1 6273 6581 -1 2 678 598 237 282 21 chr11 12224892 12225008 -109618848 + Lx9 LINE L1 7465 7593 -51 2 678 324 265 50 20 chr11 12225129 12225229 -109618627 + MIR SINE MIR 90 192 -70 2 678 295 314 5 104 chr11 12225426 12225618 -109618238 - MIRb SINE MIR 0 268 96 2 678 240 314 91 23 chr11 12225997 12226085 -109617771 + L2b LINE L2 3277 3370 -5 2 678 756 298 38 65 chr11 12227258 12227520 -109616336 + RMER15 LTR ERVL 292 546 -29 2 678 465 158 0 0 chr11 12227520 12227602 -109616254 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 678 493 163 12 0 chr11 12227977 12228063 -109615793 - Lx5 LINE L1 -231 6819 6733 2 678 5189 137 44 11 chr11 12228062 12228795 -109615061 + L1_Mur2 LINE L1 4529 5287 -590 2 678 1808 56 0 13 chr11 12228795 12229032 -109614824 + L1Md_F2 LINE L1 6347 6580 -2 2 678 5189 137 44 11 chr11 12229032 12229279 -109614577 + L1_Mur2 LINE L1 5288 5541 -336 2 678 186 71 0 0 chr11 12229300 12229328 -109614528 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 678 1016 82 0 0 chr11 12229925 12230059 -109613797 + B1_Mus1 SINE Alu 2 135 -13 2 678 288 0 0 0 chr11 12230059 12230091 -109613765 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 678 796 53 18 9 chr11 12230211 12230325 -109613531 + (TTCCC)n Simple_repeat Simple_repeat 5 119 0 2 678 680 99 9 0 chr11 12230325 12230436 -109613420 + (TC)n Simple_repeat Simple_repeat 2 113 0 2 678 351 128 17 68 chr11 12230455 12230572 -109613284 + CT-rich Low_complexity Low_complexity 2 112 0 2 678 3157 124 49 16 chr11 12230670 12231184 -109612672 + Lx LINE L1 6122 6652 -2 2 678 635 240 46 23 chr11 12231214 12231389 -109612467 - MTE2a LTR MaLR -4 375 197 2 678 293 310 9 0 chr11 12231389 12231502 -109612354 + Lx8 LINE L1 7002 7115 -358 2 678 1260 232 106 6 chr11 12231505 12231834 -109612022 + ORR1D1 LTR MaLR 1 362 -12 2 678 184 247 36 83 chr11 12232195 12232279 -109611577 + L3 LINE CR1 2163 2242 -2247 2 678 190 179 23 45 chr11 12233069 12233157 -109610699 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 2 678 359 348 49 70 chr11 12233175 12233459 -109610397 - B4 SINE B4 -14 278 1 2 678 402 21 0 0 chr11 12233553 12233600 -109610256 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 678 741 41 0 0 chr11 12233600 12233696 -109610160 + (GA)n Simple_repeat Simple_repeat 2 98 0 3 678 743 287 112 36 chr11 12234072 12234403 -109609453 - L1MB3 LINE L1 -245 5938 5568 3 678 904 122 200 11 chr11 12234403 12234593 -109609263 - URR1A DNA MER1_type 0 226 1 3 678 743 293 102 30 chr11 12234593 12234964 -109608892 - L1MB3 LINE L1 -616 5567 5182 3 678 1191 111 10 16 chr11 12235300 12235493 -109608363 - Lx2 LINE L1 -11 6986 6795 3 678 565 309 50 50 chr11 12235705 12235903 -109607953 + B3A SINE B2 1 198 0 3 678 26 0 0 0 chr11 12237118 12237144 -109606712 + AT_rich Low_complexity Low_complexity 1 26 0 3 678 188 247 195 0 chr11 12237793 12237870 -109605986 + MIRc SINE MIR 65 156 -112 3 678 843 292 84 28 chr11 12238245 12238405 -109605451 - MTE2b LTR MaLR -3 376 205 3 678 3222 43 13 0 chr11 12238405 12238796 -109605060 - MTA_Mm LTR MaLR 0 396 1 3 678 843 292 84 28 chr11 12238796 12238991 -109604865 - MTE2b LTR MaLR -175 204 1 3 678 578 208 200 62 chr11 12239340 12239535 -109604321 + ID_B1 SINE B4 2 223 -1 3 678 267 54 0 0 chr11 12241454 12241491 -109602365 + (A)n Simple_repeat Simple_repeat 1 37 0 3 678 309 186 0 0 chr11 12241633 12241703 -109602153 + (CAGA)n Simple_repeat Simple_repeat 3 72 0 3 678 945 272 74 3 chr11 12241716 12242066 -109601790 + MTEb LTR MaLR 1 375 -4 3 678 981 318 96 11 chr11 12242706 12243069 -109600787 - Tigger7 DNA MER2_type -2074 417 24 3 678 738 105 0 0 chr11 12244209 12244323 -109599533 + (CA)n Simple_repeat Simple_repeat 2 115 0 3 678 337 269 20 48 chr11 12244447 12244606 -109599250 - Lx9 LINE L1 -332 7312 7074 3 678 663 258 23 32 chr11 12244863 12245079 -109598777 - RMER1B Other Other 0 1066 853 3 678 6625 26 0 0 chr11 12245314 12246075 -109597781 - L1Md_F2 LINE L1 -14 6568 5808 3 678 1704 38 0 0 chr11 12246075 12246284 -109597572 + L1Md_F2 LINE L1 5531 5739 -144 3 678 529 283 61 38 chr11 12246481 12246694 -109597162 + MIR SINE MIR 27 244 -18 3 678 315 327 0 55 chr11 12246705 12246815 -109597041 + L2b LINE L2 3217 3320 -55 3 678 302 255 191 0 chr11 12246958 12247052 -109596804 + PB1D10 SINE Alu 2 113 -4 3 678 1122 191 117 57 chr11 12247200 12247517 -109596339 + ORR1D1 LTR MaLR 3 338 -36 3 678 324 256 0 0 chr11 12248149 12248227 -109595629 - Lx7 LINE L1 -501 7195 7118 3 678 878 256 0 11 chr11 12248234 12248416 -109595440 - B3 SINE B2 -36 180 1 3 678 23 68 0 0 chr11 12248484 12248528 -109595328 + AT_rich Low_complexity Low_complexity 1 44 0 3 678 44 56 0 11 chr11 12248635 12248654 -109595202 + AT_rich Low_complexity Low_complexity 1 19 0 3 678 1197 56 0 0 chr11 12248654 12248796 -109595060 + B1_Mm SINE Alu 1 142 -5 3 678 44 56 0 11 chr11 12248796 12248866 -109594990 + AT_rich Low_complexity Low_complexity 1 70 0 3 678 1930 214 14 5 chr11 12249929 12250347 -109593509 - Lx9 LINE L1 -483 7161 6740 3 678 1240 201 33 4 chr11 12250356 12250630 -109593226 + Lx9 LINE L1 7183 7464 -180 3 678 461 254 6 16 chr11 12252938 12253433 -109590423 + (CA)n Simple_repeat Simple_repeat 1 489 0 3 678 440 246 6 0 chr11 12253449 12253624 -109590232 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 678 2171 57 7 7 chr11 12256115 12256396 -109587460 + L1_Mus1 LINE L1 6286 6566 -1 3 678 205 211 0 40 chr11 12257388 12257462 -109586394 + GA-rich Low_complexity Low_complexity 1 71 0 3 678 610 267 39 39 chr11 12257647 12257803 -109586053 - B4A SINE B4 -136 156 1 3 678 409 234 69 36 chr11 12258191 12258310 -109585546 - RSINE1 SINE B4 -28 137 3 3 678 254 260 41 0 chr11 12258856 12258929 -109584927 - ID4 SINE ID -7 76 1 3 678 28 0 0 0 chr11 12259290 12259318 -109584538 + AT_rich Low_complexity Low_complexity 1 28 0 3 678 335 330 85 44 chr11 12261127 12261584 -109582272 - L1MC4a LINE L1 -2017 5865 5390 3 678 26 30 0 0 chr11 12262225 12262258 -109581598 + AT_rich Low_complexity Low_complexity 1 33 0 3 678 507 33 0 0 chr11 12262462 12262523 -109581333 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 3 678 282 308 112 12 chr11 12263280 12263441 -109580415 + Charlie2a DNA MER1_type 1469 1645 -1216 3 678 450 310 165 31 chr11 12263752 12264082 -109579774 + Charlie2a DNA MER1_type 1980 2358 -503 3 678 828 189 14 0 chr11 12264082 12264230 -109579626 + B1_Mur4 SINE Alu 1 150 0 3 678 450 310 165 31 chr11 12264230 12264379 -109579477 + Charlie2a DNA MER1_type 2359 2523 -338 3 678 643 336 26 17 chr11 12264482 12264712 -109579144 - B4A SINE B4 -16 276 45 3 678 225 331 32 54 chr11 12264718 12264903 -109578953 + Charlie2a DNA MER1_type 2663 2843 -18 3 678 21 0 0 0 chr11 12265872 12265893 -109577963 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 3596 184 10 13 chr11 12266727 12267437 -109576419 + Lx2B LINE L1 6282 6989 -11 3 678 3485 31 2 21 chr11 12268380 12268810 -109575046 - L1Md_F3 LINE L1 -15 6569 6148 3 678 21 0 0 0 chr11 12269056 12269077 -109574779 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 21 0 0 0 chr11 12270453 12270474 -109573382 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 775 245 29 24 chr11 12270476 12270685 -109573171 - B3 SINE B2 -6 210 1 3 678 22 0 0 0 chr11 12272503 12272525 -109571331 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 723 62 0 0 chr11 12272600 12272697 -109571159 + (TA)n Simple_repeat Simple_repeat 2 98 0 3 678 273 305 8 17 chr11 12276473 12276593 -109567263 + (TA)n Simple_repeat Simple_repeat 2 120 0 3 678 422 322 13 13 chr11 12277617 12277768 -109566088 - MER3 DNA MER1_type -54 155 5 3 678 268 290 23 0 chr11 12277992 12278123 -109565733 + (TA)n Simple_repeat Simple_repeat 2 135 0 3 678 830 270 154 23 chr11 12278789 12279376 -109564480 + L1M3 LINE L1 3344 3998 -2145 3 678 519 17 0 0 chr11 12279379 12279439 -109564417 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 678 180 152 0 0 chr11 12279455 12279488 -109564368 + GA-rich Low_complexity Low_complexity 1 33 0 3 678 212 357 85 16 chr11 12281500 12281688 -109562168 + MIR SINE MIR 40 240 -22 3 678 399 323 31 6 chr11 12282761 12282920 -109560936 - MER5A DNA MER1_type -20 169 7 3 678 984 184 60 19 chr11 12283826 12284042 -109559814 - URR1A DNA MER1_type -1 225 1 3 678 186 143 0 0 chr11 12284609 12284644 -109559212 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 3 678 308 330 0 0 chr11 12287525 12287637 -109556219 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 678 1139 42 21 0 chr11 12287750 12287893 -109555963 - B1_Mus1 SINE Alu 0 148 3 3 678 430 261 33 27 chr11 12288821 12288951 -109554905 + B1F1 SINE Alu 1 129 -19 3 678 4723 41 12 0 chr11 12288951 12289515 -109554341 + L1Md_F2 LINE L1 6007 6577 -5 3 678 341 311 35 49 chr11 12289515 12289526 -109554330 + B1_Mus1 SINE Alu 130 140 -8 3 678 384 22 0 0 chr11 12289803 12289848 -109554008 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3 678 423 310 64 0 chr11 12289859 12290046 -109553810 + L1MB3 LINE L1 5969 6167 -16 3 678 210 91 0 0 chr11 12291414 12291447 -109552409 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 678 1114 172 22 18 chr11 12299423 12299648 -109544208 + URR1A DNA MER1_type 1 226 0 3 678 1480 234 58 7 chr11 12300445 12300914 -109542942 + L1_Rod LINE L1 918 1409 -4438 3 678 1232 41 7 0 chr11 12300914 12301060 -109542796 + B1_Mus2 SINE Alu 1 147 0 3 678 745 232 66 3 chr11 12301060 12301144 -109542712 + L1_Rod LINE L1 1410 1505 -4342 3 678 1055 95 0 6 chr11 12301712 12301871 -109541985 + B2_Mm2 SINE B2 1 158 -37 3 678 336 83 0 0 chr11 12301872 12301920 -109541936 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 678 344 294 128 0 chr11 12302031 12302140 -109541716 + RSINE1 SINE B4 25 147 -18 3 678 222 37 0 0 chr11 12302161 12302188 -109541668 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 678 698 283 18 27 chr11 12302232 12302457 -109541399 + Lx7 LINE L1 6873 7095 -601 3 678 270 328 92 8 chr11 12302433 12302553 -109541303 + Lx8 LINE L1 7107 7236 -237 3 678 206 211 0 37 chr11 12302646 12302700 -109541156 + GA-rich Low_complexity Low_complexity 4 55 0 3 678 22 70 0 0 chr11 12302800 12302843 -109541013 + AT_rich Low_complexity Low_complexity 1 43 0 3 678 235 310 50 25 chr11 12303428 12303547 -109540309 - ORR1E LTR MaLR -234 125 4 3 678 361 311 141 22 chr11 12303929 12304199 -109539657 + MER63C DNA AcHobo 82 383 -547 3 678 237 275 185 11 chr11 12304264 12304356 -109539500 - Cheshire DNA MER1_type -2150 270 163 3 678 884 107 14 35 chr11 12305140 12305285 -109538571 + L1_Mus2 LINE L1 6424 6565 -1 3 678 957 195 46 0 chr11 12305790 12305985 -109537871 - MTD LTR MaLR -215 204 1 3 678 1508 76 0 0 chr11 12306611 12306808 -109537048 - L1_Mus1 LINE L1 -4 6563 6367 3 678 755 291 11 0 chr11 12306984 12307166 -109536690 + B3 SINE B2 4 187 -29 3 678 653 301 81 22 chr11 12308220 12308298 -109535558 + MER2 DNA MER2_type 2 85 -260 3 678 338 234 99 36 chr11 12308298 12308409 -109535447 + PB1D9 SINE Alu 1 118 -2 3 678 653 301 81 22 chr11 12308409 12308652 -109535204 + MER2 DNA MER2_type 86 342 -3 3 678 757 175 152 42 chr11 12308873 12309064 -109534792 + B3 SINE B2 1 212 -4 3 678 225 0 0 0 chr11 12310550 12310575 -109533281 + (TGG)n Simple_repeat Simple_repeat 2 26 0 3 678 203 314 9 38 chr11 12310609 12310715 -109533141 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 3 678 226 290 0 0 chr11 12311830 12311899 -109531957 + Tigger13a DNA MER2_type 216 284 -487 3 678 1417 198 120 25 chr11 12311956 12312323 -109531533 - MTD LTR MaLR 0 419 18 3 678 23 0 0 0 chr11 12312713 12312736 -109531120 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 240 279 21 31 chr11 12313234 12313330 -109530526 + MLT1A1 LTR MaLR 314 408 0 3 678 236 300 155 14 chr11 12313330 12313455 -109530401 + Tigger13a DNA MER2_type 601 745 -26 3 678 1525 295 89 32 chr11 12314123 12315225 -109528631 - L1MB8 LINE L1 0 6178 5011 3 678 417 209 0 42 chr11 12315228 12315323 -109528533 + RSINE1 SINE B4 14 104 -61 3 678 250 263 0 0 chr11 12315453 12315510 -109528346 - L1MB8 LINE L1 -1185 4961 4905 3 679 360 273 76 105 chr11 12321537 12321730 -109522126 - MIRb SINE MIR -51 225 39 3 679 24 32 0 0 chr11 12322949 12322980 -109520876 + AT_rich Low_complexity Low_complexity 1 31 0 3 679 201 39 0 0 chr11 12323071 12323097 -109520759 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 3 679 1607 52 0 0 chr11 12323887 12324079 -109519777 + B2_Mm1a SINE B2 1 192 -1 4 679 182 262 0 0 chr11 12325271 12325313 -109518543 - MIR SINE MIR -11 251 210 4 679 962 235 49 23 chr11 12325736 12326002 -109517854 + B4 SINE B4 6 278 -14 4 679 363 324 99 21 chr11 12326496 12326638 -109517218 + RSINE1 SINE B4 13 165 0 4 679 570 283 72 15 chr11 12326730 12326992 -109516864 + MER58B DNA MER1_type 65 341 0 4 679 21 71 0 0 chr11 12327351 12327393 -109516463 + AT_rich Low_complexity Low_complexity 1 42 0 4 679 257 292 52 10 chr11 12327454 12327551 -109516305 - B4A SINE B4 -2 290 190 4 679 242 66 31 47 chr11 12327551 12327615 -109516241 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 4 679 314 43 0 0 chr11 12327616 12327663 -109516193 - B1_Mus2 SINE Alu 0 147 101 4 679 278 325 36 0 chr11 12327713 12327796 -109516060 - B4A SINE B4 -112 180 95 4 679 1488 237 58 24 chr11 12329401 12329782 -109514074 + MTD LTR MaLR 26 419 0 4 679 760 113 0 15 chr11 12331023 12331133 -109512723 + (TTCC)n Simple_repeat Simple_repeat 2 110 0 4 679 1038 143 0 0 chr11 12331133 12331308 -109512548 + (TC)n Simple_repeat Simple_repeat 1 175 0 4 679 760 113 0 15 chr11 12331308 12331332 -109512524 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 4 679 1158 236 7 61 chr11 12334115 12334408 -109509448 + Lx7 LINE L1 7128 7404 -292 4 679 316 277 88 29 chr11 12334417 12334588 -109509268 + Lx7 LINE L1 7516 7696 0 4 679 277 59 39 19 chr11 12334973 12335025 -109508831 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 4 679 1272 289 59 17 chr11 12335650 12336179 -109507677 - L1MC1 LINE L1 0 6333 5783 4 679 1207 54 0 0 chr11 12336690 12336837 -109507019 + B1_Mus2 SINE Alu 1 147 0 4 679 252 143 0 0 chr11 12336837 12336872 -109506984 + (A)n Simple_repeat Simple_repeat 1 35 0 4 679 1213 41 7 0 chr11 12336872 12337018 -109506838 + B1_Mus2 SINE Alu 1 147 0 4 679 252 143 0 0 chr11 12337018 12337031 -109506825 + (A)n Simple_repeat Simple_repeat 1 13 0 4 679 510 292 45 9 chr11 12337040 12337276 -109506580 + L1MEf LINE L1 1540 1795 -4838 4 679 462 298 134 80 chr11 12337342 12337641 -109506215 + ORR1E LTR MaLR 2 316 -43 4 679 262 245 189 19 chr11 12338568 12338772 -109505084 + L1MD LINE L1 5674 5909 -2086 4 679 354 23 0 0 chr11 12338787 12338830 -109505026 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 4 679 1141 72 0 0 chr11 12338830 12338969 -109504887 - B1_Mus2 SINE Alu -8 139 1 4 679 2384 142 32 2 chr11 12338971 12339375 -109504481 + MTC LTR MaLR 6 421 0 4 679 24 53 0 0 chr11 12339533 12339571 -109504285 + AT_rich Low_complexity Low_complexity 1 38 0 4 679 28 0 0 0 chr11 12339599 12339627 -109504229 + AT_rich Low_complexity Low_complexity 1 28 0 4 679 417 294 138 35 chr11 12339752 12340013 -109503843 - MER2 DNA MER2_type -43 302 15 4 679 1173 275 106 24 chr11 12340019 12340530 -109503326 + Lx8 LINE L1 6807 7359 -114 4 679 242 287 81 65 chr11 12341011 12341197 -109502659 + MLT1A1 LTR MaLR 167 355 -53 4 679 252 0 0 0 chr11 12341222 12341250 -109502606 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 679 240 100 0 0 chr11 12341252 12341292 -109502564 - B1_Mur4 SINE Alu -5 145 106 4 679 455 48 16 0 chr11 12341292 12341354 -109502502 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 4 679 1153 57 0 0 chr11 12341356 12341497 -109502359 - B1_Mm SINE Alu -6 141 1 4 679 247 232 284 20 chr11 12341560 12341700 -109502156 + MER53 DNA hAT 17 193 0 4 679 418 180 20 0 chr11 12341707 12341807 -109502049 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 679 645 299 104 40 chr11 12341849 12342100 -109501756 - B4A SINE B4 -22 270 4 4 679 241 344 48 8 chr11 12343302 12343428 -109500428 + L4 LINE RTE 1700 1830 -199 4 679 475 276 158 48 chr11 12344833 12345252 -109498604 + L1ME2 LINE L1 5447 5911 -253 4 679 753 224 187 6 chr11 12345832 12346180 -109497676 - MTD LTR MaLR -8 411 1 4 679 183 80 0 0 chr11 12346338 12346363 -109497493 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 679 243 0 0 0 chr11 12346769 12346796 -109497060 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 679 248 317 73 0 chr11 12347041 12347164 -109496692 - MER94 DNA AcHobo -2 132 1 4 679 377 325 72 60 chr11 12347503 12347670 -109496186 + MLT1F LTR MaLR 129 297 -251 4 679 573 245 50 14 chr11 12347975 12348116 -109495740 - B1F SINE Alu -3 146 1 4 679 198 0 0 0 chr11 12348662 12348684 -109495172 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 679 1306 74 28 6 chr11 12348718 12348894 -109494962 + B2_Mm2 SINE B2 2 181 -14 4 679 854 302 65 36 chr11 12349059 12349444 -109494412 + Lx7 LINE L1 7023 7418 -278 4 679 26 0 0 0 chr11 12349562 12349588 -109494268 + AT_rich Low_complexity Low_complexity 1 26 0 4 679 292 231 97 30 chr11 12350656 12350790 -109493066 + MIR SINE MIR 86 228 -34 4 679 2545 88 8 3 chr11 12351180 12351531 -109492325 - L1_Mus3 LINE L1 -5 6633 6281 4 679 344 314 132 35 chr11 12352274 12352614 -109491242 - MLT1A LTR MaLR 0 374 2 4 679 405 0 0 0 chr11 12353267 12353312 -109490544 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 4 679 444 314 57 6 chr11 12354241 12354398 -109489458 + RSINE1 SINE B4 1 165 0 4 679 333 0 0 0 chr11 12354399 12354436 -109489420 + (TAA)n Simple_repeat Simple_repeat 3 39 0 4 679 582 114 0 0 chr11 12355223 12355311 -109488545 + (GGA)n Simple_repeat Simple_repeat 3 90 0 4 679 324 213 56 97 chr11 12355594 12355792 -109488064 + MTEb LTR MaLR 202 379 0 4 679 186 133 0 0 chr11 12356993 12357023 -109486833 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 679 285 109 0 0 chr11 12357047 12357093 -109486763 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 679 462 266 93 19 chr11 12357106 12357267 -109486589 - B4A SINE B4 -119 173 1 4 679 217 260 50 38 chr11 12360010 12360090 -109483766 - B1_Mur4 SINE Alu 0 150 70 4 679 412 297 23 8 chr11 12360056 12360185 -109483671 - B1F SINE Alu -18 131 1 4 679 768 50 33 16 chr11 12361616 12361737 -109482119 + (ATATG)n Simple_repeat Simple_repeat 3 125 0 4 679 259 364 97 35 chr11 12362173 12362318 -109481538 + RSINE1 SINE B4 4 157 -8 4 679 401 0 20 0 chr11 12362323 12362372 -109481484 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 679 26 0 0 0 chr11 12363332 12363358 -109480498 + AT_rich Low_complexity Low_complexity 1 26 0 4 679 204 237 58 22 chr11 12364937 12365075 -109478781 + (CCGCG)n Simple_repeat Simple_repeat 3 145 0 4 679 184 300 59 20 chr11 12365985 12366087 -109477769 + L2a LINE L2 3111 3216 -210 4 679 270 0 0 0 chr11 12366161 12366191 -109477665 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 679 25 0 0 0 chr11 12367094 12367119 -109476737 + AT_rich Low_complexity Low_complexity 1 25 0 4 679 233 244 91 23 chr11 12367388 12367476 -109476380 - MER5A1 DNA MER1_type -53 113 20 4 679 314 310 124 0 chr11 12367591 12367704 -109476152 - Arthur1A DNA Tip100 -3 174 48 4 679 22 0 0 0 chr11 12367778 12367800 -109476056 + AT_rich Low_complexity Low_complexity 1 22 0 4 679 459 320 60 43 chr11 12367842 12368217 -109475639 + MLT1A LTR MaLR 4 390 0 4 679 1075 30 76 0 chr11 12368253 12368384 -109475472 + B1_Mus2 SINE Alu 2 142 -5 4 679 504 32 0 0 chr11 12368402 12368464 -109475392 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 679 289 53 0 0 chr11 12368469 12368507 -109475349 + B1_Mm SINE Alu 104 141 -6 4 679 243 0 0 0 chr11 12368509 12368536 -109475320 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 679 229 366 11 0 chr11 12368616 12368709 -109475147 + MIRb SINE MIR 155 248 -20 4 679 275 192 0 0 chr11 12369230 12369282 -109474574 + MTEa LTR MaLR 5 56 -323 4 679 4305 189 34 48 chr11 12369293 12370055 -109473801 + RLTR25B LTR ERVK 28 807 -221 4 679 459 63 0 0 chr11 12370055 12370118 -109473738 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 679 4305 189 34 48 chr11 12370118 12370371 -109473485 + RLTR25B LTR ERVK 808 1028 0 4 679 299 347 115 58 chr11 12370371 12370526 -109473330 + MTEa LTR MaLR 59 222 -157 4 679 291 223 37 55 chr11 12370675 12370784 -109473072 - MLT1A1 LTR MaLR 0 408 302 4 679 545 272 151 11 chr11 12371314 12371500 -109472356 + B4 SINE B4 81 292 0 4 679 330 26 0 0 chr11 12371503 12371542 -109472314 + (CATA)n Simple_repeat Simple_repeat 4 42 0 4 679 1328 266 136 38 chr11 12371555 12372520 -109471336 - L1MB7 LINE L1 -57 6127 5078 4 679 251 38 18 71 chr11 12375215 12375271 -109468585 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 679 1189 49 0 0 chr11 12376616 12376759 -109467097 + B1_Mus1 SINE Alu 1 143 -5 4 679 458 203 75 8 chr11 12377293 12377427 -109466429 - L1MB3 LINE L1 -256 5927 5785 4 679 504 305 28 7 chr11 12377516 12377658 -109466198 + RSINE1 SINE B4 3 147 -18 4 679 416 336 36 7 chr11 12377739 12377877 -109465979 + B3A SINE B2 27 168 -30 4 679 222 91 0 0 chr11 12377879 12377912 -109465944 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 679 923 276 20 32 chr11 12377998 12378339 -109465517 - ERVL-int LTR ERVL -1 5756 5420 4 679 7933 71 12 0 chr11 12378339 12379665 -109464191 + L1_Mus1 LINE L1 5251 6565 -2 4 679 6055 282 83 55 chr11 12379683 12381012 -109462844 - ERVL-int LTR ERVL -375 5382 4007 4 679 967 52 29 0 chr11 12381012 12381148 -109462708 + (TTTC)n Simple_repeat Simple_repeat 1 140 0 4 679 6055 282 83 55 chr11 12381148 12381238 -109462618 - ERVL-int LTR ERVL -1751 4006 3964 4 679 1201 55 0 0 chr11 12381238 12381383 -109462473 - B1_Mm SINE Alu -1 146 2 4 679 6055 282 83 55 chr11 12381383 12382592 -109461264 - ERVL-int LTR ERVL -1794 3963 2680 4 679 361 202 95 0 chr11 12382656 12382740 -109461116 - ERVL-int LTR ERVL -3179 2535 2444 4 679 1074 103 7 0 chr11 12382924 12383070 -109460786 - B1_Mus1 SINE Alu -1 147 1 4 679 198 0 0 0 chr11 12383255 12383277 -109460579 + (A)n Simple_repeat Simple_repeat 1 22 0 4 679 378 0 0 0 chr11 12383296 12383338 -109460518 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 679 269 220 0 0 chr11 12383340 12383399 -109460457 + L1M LINE L1 5307 5365 -1079 4 679 5550 68 19 6 chr11 12383402 12384125 -109459731 - L1Md_F2 LINE L1 0 6582 5850 5 679 290 235 0 42 chr11 12384310 12384381 -109459475 + MTD LTR MaLR 1 68 -351 5 679 2173 191 60 19 chr11 12384388 12384828 -109459028 + RLTR20B2 LTR ERVK 1 457 -103 5 679 507 17 0 0 chr11 12384828 12384888 -109458968 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 679 2173 191 60 19 chr11 12384888 12384981 -109458875 + RLTR20B2 LTR ERVK 458 555 -5 5 679 909 245 138 15 chr11 12384989 12385258 -109458598 + MTD LTR MaLR 74 375 -44 5 679 241 267 148 20 chr11 12385383 12385532 -109458324 + L1M LINE L1 5605 5772 -2223 4 679 764 263 6 192 chr11 12385671 12386156 -109457700 - RLTR11B LTR ERVK -58 395 1 5 679 1170 68 0 0 chr11 12386172 12386318 -109457538 + B1_Mus2 SINE Alu 2 147 0 5 679 1377 54 0 0 chr11 12386332 12386499 -109457357 - Lx3_Mus LINE L1 -164 6845 6679 5 679 273 98 0 0 chr11 12386500 12386541 -109457315 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 679 5661 65 0 0 chr11 12386892 12387594 -109456262 - L1_Mus1 LINE L1 -1 6566 5865 5 679 225 319 51 89 chr11 12387785 12387943 -109455913 + CYRA11_Mm Unknown Y-chromosome 165 316 -301 5 679 870 159 136 50 chr11 12387802 12388001 -109455855 - URR1A DNA MER1_type -10 216 1 5 679 1419 59 11 21 chr11 12388311 12388502 -109455354 - B2_Mm1t SINE B2 -3 190 2 5 679 2223 239 42 2 chr11 12388526 12389024 -109454832 - Lx5 LINE L1 -3 7047 6530 5 679 1348 148 105 8 chr11 12389025 12389264 -109454592 + Lx5 LINE L1 6275 6536 -514 5 679 225 315 64 9 chr11 12389741 12389850 -109454006 + L2 LINE L2 1271 1385 -2034 5 679 216 0 0 0 chr11 12389997 12390021 -109453835 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 679 663 284 14 41 chr11 12390069 12390289 -109453567 - B3 SINE B2 -1 215 2 5 679 1135 82 0 0 chr11 12390316 12390463 -109453393 - B1_Mus2 SINE Alu 0 147 1 5 679 750 187 120 100 chr11 12390538 12390825 -109453031 + RLTR9C LTR ERVK 1 293 -116 5 679 318 47 0 0 chr11 12390825 12390868 -109452988 - L1_Mm LINE L1 -2038 3845 3803 5 679 441 173 34 60 chr11 12390869 12390986 -109452870 + RLTRETN_Mm LTR ERVK 209 322 0 5 679 276 290 37 18 chr11 12391094 12391203 -109452653 - Tigger5 DNA MER2_type -6 2400 2290 5 679 388 354 44 0 chr11 12391246 12391404 -109452452 - Tigger5 DNA MER2_type -2216 190 26 5 679 264 59 0 0 chr11 12391617 12391651 -109452205 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 5 679 2456 268 138 17 chr11 12391693 12392043 -109451813 - Lx6 LINE L1 -82 7378 7023 5 679 207 0 0 0 chr11 12392043 12392066 -109451790 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 679 2456 268 138 17 chr11 12392066 12392486 -109451370 - Lx6 LINE L1 -438 7022 6515 5 679 1424 221 89 26 chr11 12392495 12392876 -109450980 + Lx5 LINE L1 5873 6277 -773 5 679 392 293 48 18 chr11 12393235 12393402 -109450454 - L1MC4a LINE L1 -20 7862 7691 5 679 272 260 150 0 chr11 12393514 12393614 -109450242 - B1F2 SINE Alu -21 128 14 5 679 434 99 14 0 chr11 12394507 12394532 -109449324 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 679 1184 101 0 6 chr11 12394532 12394711 -109449145 + (TTC)n Simple_repeat Simple_repeat 2 179 0 5 679 434 99 14 0 chr11 12394711 12394756 -109449100 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 679 352 264 75 32 chr11 12395524 12395712 -109448144 + L1_Mur3 LINE L1 1647 1842 -4005 5 679 954 254 187 3 chr11 12395719 12396035 -109447821 + ORR1D1 LTR MaLR 1 374 0 5 679 542 251 30 138 chr11 12396094 12396152 -109447704 + ORR1D1-int LTR MaLR 504 567 -803 5 679 1175 55 0 27 chr11 12396152 12396302 -109447554 + B1_Mus1 SINE Alu 1 146 -2 5 679 542 251 30 138 chr11 12396302 12396474 -109447382 + ORR1D1-int LTR MaLR 568 709 -661 5 679 559 314 0 0 chr11 12396599 12396739 -109447117 + RSINE1 SINE B4 4 143 -22 5 679 1144 272 55 9 chr11 12396883 12397228 -109446628 + MTE2b LTR MaLR 1 361 -18 5 679 578 257 20 0 chr11 12397241 12397407 -109446449 + L1_Mur3 LINE L1 2233 2396 -3451 5 679 1566 284 38 40 chr11 12397498 12397915 -109445941 + L1_Mur3 LINE L1 3461 3894 -1986 5 679 2416 162 92 38 chr11 12397915 12398415 -109445441 - RLTR11A LTR ERVK -1 527 1 5 679 1566 284 38 40 chr11 12398415 12398436 -109445420 + L1_Mur3 LINE L1 3895 3908 -1972 5 679 429 20 0 0 chr11 12398436 12398486 -109445370 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 679 1218 55 7 0 chr11 12398490 12398636 -109445220 - B1_Mm SINE Alu 0 147 1 5 679 1566 284 38 40 chr11 12398636 12398894 -109444962 + L1_Mur3 LINE L1 3909 4155 -1725 5 679 568 303 37 12 chr11 12398987 12399228 -109444628 + RMER5 LTR ERV1 160 406 -128 5 679 273 231 54 116 chr11 12399248 12399395 -109444461 + RMER17B LTR ERVK 323 460 -498 5 679 990 48 0 0 chr11 12399396 12399520 -109444336 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 5 679 494 259 0 36 chr11 12399521 12399661 -109444195 + RMER5 LTR ERV1 392 526 -8 5 679 372 155 0 0 chr11 12399662 12399733 -109444123 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 679 1789 279 102 25 chr11 12399735 12400412 -109443444 + Lx8 LINE L1 6529 7257 -216 5 679 995 59 0 0 chr11 12400526 12400661 -109443195 - B1_Mm SINE Alu -9 138 4 5 679 1181 65 107 6 chr11 12400745 12400914 -109442942 - B2_Mm2 SINE B2 -9 186 1 5 679 626 274 52 26 chr11 12401082 12401273 -109442583 + B3A SINE B2 2 197 -1 5 679 243 143 18 18 chr11 12401381 12401438 -109442418 + T-rich Low_complexity Low_complexity 4 60 0 5 679 964 88 73 0 chr11 12401443 12401579 -109442277 - B1_Mus1 SINE Alu -1 147 2 5 679 187 304 9 97 chr11 12401989 12402102 -109441754 + L3 LINE CR1 3535 3637 -852 5 679 2951 84 0 24 chr11 12402459 12402874 -109440982 - L1Md_F2 LINE L1 -1 6581 6177 5 679 1620 42 0 5 chr11 12403235 12403426 -109440430 + B2_Mm2 SINE B2 2 191 -4 5 679 420 132 21 21 chr11 12403440 12403533 -109440323 + CT-rich Low_complexity Low_complexity 6 98 0 5 679 230 295 0 0 chr11 12403560 12403621 -109440235 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 679 2784 74 0 16 chr11 12404113 12404486 -109439370 - L1Md_F2 LINE L1 0 6582 6216 5 679 565 111 0 29 chr11 12404989 12405091 -109438765 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5 679 601 121 20 0 chr11 12405096 12405195 -109438661 + PB1D9 SINE Alu 20 120 0 5 679 231 302 0 16 chr11 12406041 12406105 -109437751 - BC1_Mm scRNA scRNA -70 82 20 5 679 2805 12 95 6 chr11 12407311 12407648 -109436208 - IAPLTR1_Mm LTR ERVK 0 367 1 5 679 29407 22 1 1 chr11 12407648 12410920 -109432936 - IAPEz-int LTR ERVK 0 6481 3209 5 679 7974 74 96 12 chr11 12410918 12412119 -109431737 - IAPEz-int LTR ERVK -5168 1313 67 5 679 1044 119 74 0 chr11 12412090 12412266 -109431590 - IAPEz-int LTR ERVK -6285 196 8 5 679 2779 15 95 6 chr11 12412266 12412603 -109431253 - IAPLTR1_Mm LTR ERVK 0 367 1 5 679 341 313 57 23 chr11 12414831 12415096 -109428760 - L1M5 LINE L1 -361 5812 5539 5 679 342 115 0 0 chr11 12416110 12416162 -109427694 + (T)n Simple_repeat Simple_repeat 1 52 0 5 679 1140 82 0 0 chr11 12416162 12416309 -109427547 - B1_Mus2 SINE Alu 0 147 1 5 679 21 0 0 0 chr11 12416953 12416974 -109426882 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 6714 89 93 23 chr11 12416985 12418036 -109425820 - Lx3_Mus LINE L1 -1 7008 5884 5 679 8979 75 13 5 chr11 12418036 12418624 -109425232 + Lx8 LINE L1 4677 5269 -617 5 679 254 0 83 0 chr11 12418624 12418660 -109425196 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 679 8979 88 16 5 chr11 12418660 12419289 -109424567 + Lx8 LINE L1 5270 5918 -1555 5 679 665 323 47 61 chr11 12419399 12419676 -109424180 - B4 SINE B4 -18 274 2 5 679 1181 88 70 6 chr11 12420111 12420282 -109423574 - B2_Mm2 SINE B2 -11 184 3 5 679 254 253 158 0 chr11 12420323 12420418 -109423438 + Tigger7 DNA MER2_type 12 121 -2370 5 679 287 172 97 0 chr11 12420425 12420518 -109423338 + Tigger7 DNA MER2_type 2293 2390 -101 5 679 1029 273 75 22 chr11 12420527 12420845 -109423011 + MER2 DNA MER2_type 10 344 -1 5 679 6711 75 19 0 chr11 12421848 12422724 -109421132 - RLTR13B1 LTR ERVK 0 893 1 5 679 1151 146 34 30 chr11 12422736 12422969 -109420887 + ORR1A3 LTR MaLR 1 234 -92 5 679 8099 46 0 0 chr11 12423138 12424097 -109419759 - L1Md_F2 LINE L1 -7 6575 5617 5 679 601 323 120 9 chr11 12424294 12424519 -109419337 + MLT1A0 LTR MaLR 114 363 -2 5 679 2204 148 13 21 chr11 12425418 12425799 -109418057 + ORR1B1 LTR MaLR 3 380 -14 5 679 341 93 0 18 chr11 12426387 12426442 -109417414 + (CAT)n Simple_repeat Simple_repeat 2 55 0 5 679 417 39 0 0 chr11 12426969 12427020 -109416836 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 5 679 204 97 0 0 chr11 12427258 12427289 -109416567 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 679 23 54 0 0 chr11 12427647 12427684 -109416172 + AT_rich Low_complexity Low_complexity 1 37 0 5 679 265 303 11 0 chr11 12428159 12428248 -109415608 + (CCA)n Simple_repeat Simple_repeat 2 91 0 5 679 228 301 21 11 chr11 12428569 12428663 -109415193 + (CTA)n Simple_repeat Simple_repeat 1 95 0 5 679 1303 265 70 8 chr11 12429729 12430113 -109413743 - MTD LTR MaLR -2 417 10 5 679 207 200 0 22 chr11 12430360 12430406 -109413450 + GA-rich Low_complexity Low_complexity 2 46 0 5 679 403 329 44 0 chr11 12430779 12430916 -109412940 + U1 snRNA snRNA 1 143 -22 5 679 408 20 0 0 chr11 12431861 12431910 -109411946 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 679 312 27 0 0 chr11 12431910 12431946 -109411910 + (GGGAGA)n Simple_repeat Simple_repeat 4 40 0 5 679 2546 58 0 33 chr11 12433475 12433812 -109410044 + IAPLTR3 LTR ERVK 1 326 0 5 679 461 71 14 0 chr11 12434662 12434732 -109409124 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 679 237 152 22 0 chr11 12434732 12434778 -109409078 + (CCA)n Simple_repeat Simple_repeat 1 47 0 5 679 214 82 40 20 chr11 12434846 12434896 -109408960 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 5 679 856 123 14 0 chr11 12434901 12435047 -109408809 + (GA)n Simple_repeat Simple_repeat 2 149 0 5 679 21 0 0 0 chr11 12435673 12435694 -109408162 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 2235 26 85 0 chr11 12435836 12436107 -109407749 + L1_Mus1 LINE L1 6272 6565 -2 5 679 867 250 21 8 chr11 12436486 12436724 -109407132 - MLT1E1A LTR MaLR 0 680 440 5 679 215 324 82 22 chr11 12437419 12437602 -109406254 - L2 LINE L2 -2412 1007 814 5 679 777 219 72 14 chr11 12437706 12437914 -109405942 + RMER15 LTR ERVL 1 220 -355 5 679 527 328 56 71 chr11 12437977 12438037 -109405819 + MTE2b LTR MaLR 3 63 -316 5 679 1701 71 0 17 chr11 12438037 12438267 -109405589 - L1_Mus1 LINE L1 0 6567 6342 5 679 536 267 132 41 chr11 12438267 12438416 -109405440 + MTE2b LTR MaLR 52 200 -179 5 679 435 38 0 0 chr11 12438416 12438469 -109405387 + (CATA)n Simple_repeat Simple_repeat 4 56 0 5 679 536 254 148 35 chr11 12438469 12438636 -109405220 + MTE2b LTR MaLR 200 374 -5 5 679 646 278 110 27 chr11 12438862 12439260 -109404596 + MLT2B4 LTR ERVL 1 412 -2 5 679 623 294 71 57 chr11 12439261 12439379 -109404477 - L1MB3 LINE L1 -41 6142 6028 5 679 1075 283 72 11 chr11 12439379 12439726 -109404130 + ORR1D2 LTR MaLR 1 368 -2 6 679 623 294 71 57 chr11 12439726 12440043 -109403813 - L1MB3 LINE L1 -156 6027 5701 5 679 267 283 212 68 chr11 12440084 12440306 -109403550 - L1MB3 LINE L1 -474 5697 5444 5 679 477 90 0 0 chr11 12440911 12440978 -109402878 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 6 679 1008 71 21 0 chr11 12440985 12441126 -109402730 - B1_Mus1 SINE Alu -3 145 2 6 679 6106 78 83 1 chr11 12441472 12442331 -109401525 + RLTR13B3 LTR ERVK 1 929 0 6 679 1060 191 287 19 chr11 12443963 12444284 -109399572 - RMER17C LTR ERVK -3 407 1 6 679 5342 116 42 33 chr11 12444284 12444640 -109399216 - RMER17C-int LTR ERVK 0 3238 2879 6 679 474 88 0 0 chr11 12444640 12444708 -109399148 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 679 5342 135 45 33 chr11 12444708 12445623 -109398233 - RMER17C-int LTR ERVK -360 2878 2056 6 679 614 176 30 22 chr11 12445628 12445762 -109398094 - RMER17C-int LTR ERVK -1570 1668 1534 6 679 5673 189 77 114 chr11 12445765 12446445 -109397411 - RMER17C-int LTR ERVK -1195 2043 1368 6 679 985 97 21 7 chr11 12446445 12446590 -109397266 - B1_Mus1 SINE Alu 0 148 2 6 679 5673 189 77 114 chr11 12446590 12447740 -109396116 - RMER17C-int LTR ERVK -1871 1367 282 6 679 945 184 82 28 chr11 12447974 12448293 -109395563 - RMER17C LTR ERVK 0 410 75 6 679 281 26 26 0 chr11 12448352 12448390 -109395466 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 679 6837 90 1 1 chr11 12448415 12449806 -109394050 + L1Md_F2 LINE L1 742 2132 -3751 6 679 13281 78 1 0 chr11 12449803 12451538 -109392318 + L1Md_F2 LINE L1 3851 5586 -297 6 84 7833 65 1 8 chr11 12451538 12452534 -109391322 + L1Md_F2 LINE L1 5587 6575 -7 6 680 414 264 93 31 chr11 12452570 12452699 -109391157 - Lx9 LINE L1 -1625 6019 5883 6 680 1281 281 87 75 chr11 12452699 12453421 -109390435 + Lx9 LINE L1 6912 7642 -2 6 680 659 241 206 3 chr11 12453422 12453714 -109390142 - Lx9 LINE L1 -22 7622 7272 6 680 996 264 79 53 chr11 12455327 12455783 -109388073 + Lx9 LINE L1 7162 7629 -15 6 680 210 162 0 0 chr11 12456067 12456104 -109387752 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 680 551 312 55 10 chr11 12456104 12456305 -109387551 - ID_B1 SINE B4 -14 210 1 6 680 24 0 0 0 chr11 12456613 12456637 -109387219 + AT_rich Low_complexity Low_complexity 1 24 0 6 680 327 49 0 0 chr11 12456737 12456778 -109387078 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 680 259 330 0 17 chr11 12457303 12457420 -109386436 + CT-rich Low_complexity Low_complexity 2 116 0 6 680 907 34 0 16 chr11 12457485 12457606 -109386250 + (TTC)n Simple_repeat Simple_repeat 2 120 0 6 680 578 298 65 48 chr11 12458407 12458688 -109385168 + MTD LTR MaLR 6 288 -119 6 680 261 197 0 0 chr11 12459955 12460031 -109383825 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 680 301 143 0 60 chr11 12460277 12460344 -109383512 - Lx4B LINE L1 0 7058 6996 6 680 447 208 18 65 chr11 12460344 12460514 -109383342 - RNLTR23 LTR ERVK -1 641 480 6 680 251 98 0 38 chr11 12461041 12461094 -109382762 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 6 680 2184 253 58 10 chr11 12461292 12461891 -109381965 - RNERVK23-int LTR ERVK -404 7813 7186 6 680 2908 36 0 3 chr11 12461911 12462249 -109381607 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 680 57247 21 11 6 chr11 12462249 12468694 -109375162 + IAPEz-int LTR ERVK 8 6481 0 6 680 2919 33 0 3 chr11 12468694 12469032 -109374824 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 680 943 299 44 28 chr11 12469033 12469463 -109374393 - RNERVK23-int LTR ERVK -1039 7178 6742 6 680 2903 85 4 39 chr11 12469463 12469929 -109373927 + IAPLTR2_Mm LTR ERVK 26 475 0 6 680 10997 274 31 24 chr11 12470047 12472840 -109371016 - RNERVK23-int LTR ERVK -1601 6616 3802 6 680 3302 66 5 0 chr11 12472840 12473251 -109370605 - L1_Mus1 LINE L1 -2 6565 6153 6 680 10997 274 31 24 chr11 12473251 12473707 -109370149 - RNERVK23-int LTR ERVK -4416 3801 3345 6 680 461 17 17 0 chr11 12473712 12473761 -109370095 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 6 680 765 85 0 0 chr11 12473761 12473867 -109369989 + (TCCC)n Simple_repeat Simple_repeat 4 109 0 6 680 461 17 17 0 chr11 12473867 12473877 -109369979 + (TTTC)n Simple_repeat Simple_repeat 3 13 0 6 680 1764 74 0 34 chr11 12473901 12474172 -109369684 - L1_Mus1 LINE L1 0 6567 6331 6 680 4413 284 31 16 chr11 12474172 12475605 -109368251 - RNERVK23-int LTR ERVK -4863 3354 1901 6 680 1485 196 184 51 chr11 12475605 12475659 -109368197 - RMER19C LTR ERVK -57 554 502 6 680 1136 76 7 0 chr11 12475659 12475804 -109368052 + B1_Mm SINE Alu 2 147 0 6 680 321 26 0 0 chr11 12475814 12475852 -109368004 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 680 1485 196 184 51 chr11 12475852 12476275 -109367581 - RMER19C LTR ERVK -110 501 1 6 680 388 325 8 0 chr11 12476505 12476622 -109367234 + RSINE1 SINE B4 3 120 -45 6 680 396 0 0 0 chr11 12476675 12476719 -109367137 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 680 6323 36 1 0 chr11 12476810 12477550 -109366306 - L1Md_A LINE L1 0 6582 5842 6 680 690 13 0 0 chr11 12477550 12477627 -109366229 + L1Md_A LINE L1 5756 5832 -51 6 680 403 233 20 40 chr11 12477636 12477788 -109366068 + BGLII_B LTR ERVK 119 267 -174 6 680 456 67 0 0 chr11 12477806 12477866 -109365990 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 680 1170 211 109 84 chr11 12477866 12478317 -109365539 + RLTR31_Mur LTR ERVK 87 548 -5 6 680 306 0 0 0 chr11 12478777 12478811 -109365045 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 680 368 221 95 0 chr11 12480683 12480778 -109363078 - PB1D10 SINE Alu -1 116 13 6 680 267 244 151 0 chr11 12480704 12480790 -109363066 - ID_B1 SINE B4 -48 176 78 6 680 223 279 136 25 chr11 12481762 12481843 -109362013 + B4A SINE B4 85 174 -118 6 680 505 175 30 20 chr11 12481776 12481875 -109361981 + PB1D10 SINE Alu 18 117 0 6 680 512 71 0 12 chr11 12482444 12482452 -109361404 + (GA)n Simple_repeat Simple_repeat 1 8 0 6 680 360 0 0 0 chr11 12482452 12482492 -109361364 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 680 512 71 0 12 chr11 12482492 12482568 -109361288 + (GA)n Simple_repeat Simple_repeat 1 75 0 6 680 282 160 0 0 chr11 12482574 12482624 -109361232 + (ATG)n Simple_repeat Simple_repeat 2 51 0 6 680 218 287 123 47 chr11 12482694 12482800 -109361056 - MER5A DNA MER1_type -72 117 4 6 680 288 302 53 30 chr11 12483469 12483602 -109360254 - MIRb SINE MIR -59 209 74 6 680 3145 53 13 0 chr11 12483958 12484351 -109359505 + L1Md_F2 LINE L1 6185 6582 0 6 680 231 242 52 52 chr11 12484712 12484808 -109359048 - MLT1A1 LTR MaLR -312 96 1 6 680 577 233 53 40 chr11 12484960 12485070 -109358786 + MTD LTR MaLR 6 112 -307 6 680 279 0 0 0 chr11 12485070 12485101 -109358755 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 680 577 233 53 40 chr11 12485101 12485142 -109358714 + MTD LTR MaLR 113 159 -260 6 680 1190 255 31 14 chr11 12485143 12485233 -109358623 + MTD LTR MaLR 24 112 -307 6 680 279 0 0 0 chr11 12485233 12485264 -109358592 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 680 1190 255 31 14 chr11 12485264 12485463 -109358393 + MTD LTR MaLR 113 318 -101 6 680 469 277 8 0 chr11 12485613 12485732 -109358124 + ID_B1 SINE B4 71 190 -34 6 680 634 203 141 16 chr11 12486157 12486342 -109357514 + ORR1B1 LTR MaLR 1 208 -186 6 680 769 46 18 9 chr11 12486359 12486469 -109357387 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 6 680 4594 75 0 29 chr11 12486472 12487089 -109356767 - L1Md_F2 LINE L1 -19 6563 5965 6 680 3136 46 0 3 chr11 12487112 12487486 -109356370 + L1Md_F2 LINE L1 5587 5959 -623 6 680 1159 163 5 0 chr11 12487486 12487682 -109356174 + ORR1A4 LTR MaLR 129 325 -4 6 680 1916 80 0 0 chr11 12487682 12487932 -109355924 - L1_Mus3 LINE L1 -483 6155 5906 6 680 1643 104 135 0 chr11 12487928 12488187 -109355669 - L1_Mus3 LINE L1 -223 5660 5367 6 680 2221 124 68 68 chr11 12488182 12488748 -109355108 + L1_Mus3 LINE L1 6128 6997 0 6 680 205 50 71 48 chr11 12490404 12490446 -109353410 + T-rich Low_complexity Low_complexity 2 44 0 6 680 243 0 0 0 chr11 12490505 12490532 -109353324 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 6 680 459 286 51 34 chr11 12490686 12490863 -109352993 - Ricksha_c DNA MuDR -1153 895 716 6 680 1308 114 26 43 chr11 12490874 12491104 -109352752 - Lx3_Mus LINE L1 0 7009 6784 6 680 621 291 35 6 chr11 12491477 12491650 -109352206 - B3 SINE B2 0 216 39 6 680 8772 23 0 0 chr11 12491669 12492909 -109350947 - L1Md_A LINE L1 0 6582 5343 6 680 7237 61 0 0 chr11 12492980 12493870 -109349986 - L1Md_T LINE L1 0 6582 5693 6 680 578 285 26 46 chr11 12494088 12494283 -109349573 + B3A SINE B2 2 192 -6 6 680 22 35 0 0 chr11 12494730 12494759 -109349097 + AT_rich Low_complexity Low_complexity 1 29 0 6 680 3323 280 52 18 chr11 12494816 12495787 -109348069 - Lx8 LINE L1 -113 7360 6357 6 680 1186 75 0 0 chr11 12495812 12495959 -109347897 - B1_Mus1 SINE Alu 0 148 2 6 680 2010 212 81 110 chr11 12496175 12496570 -109347286 + RMER15 LTR ERVL 1 428 -147 6 680 387 0 0 0 chr11 12496570 12496613 -109347243 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 6 680 2010 212 81 110 chr11 12496613 12496629 -109347227 + RMER15 LTR ERVL 429 429 -146 6 680 951 83 98 0 chr11 12496629 12496762 -109347094 - B1_Mus2 SINE Alu 0 147 2 6 680 2010 212 81 110 chr11 12496762 12496941 -109346915 + RMER15 LTR ERVL 429 575 0 6 680 223 311 103 63 chr11 12497313 12497488 -109346368 + MIRc SINE MIR 9 190 -78 6 680 447 312 67 22 chr11 12498570 12498750 -109345106 - MER20 DNA MER1_type -19 200 13 6 680 433 314 89 66 chr11 12498909 12499212 -109344644 - MER2 DNA MER2_type -33 312 3 6 680 196 339 0 0 chr11 12499574 12499636 -109344220 + L2 LINE L2 2702 2763 -656 6 680 1532 221 57 3 chr11 12500019 12500210 -109343646 - ORR1C2 LTR MaLR -15 369 168 1 680 801 31 0 0 chr11 12500210 12500306 -109343550 + (GGAGA)n Simple_repeat Simple_repeat 3 98 0 2 680 1532 221 57 3 chr11 12500306 12500464 -109343392 - ORR1C2 LTR MaLR -217 167 2 1 680 3320 230 163 19 chr11 12500464 12501482 -109342374 - ORR1C2-int LTR MaLR 0 1370 171 1 680 618 0 37 0 chr11 12501482 12501564 -109342292 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 680 459 0 0 0 chr11 12501564 12501614 -109342242 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 680 1055 221 52 22 chr11 12501614 12501768 -109342088 - ORR1C2 LTR MaLR -204 170 7 1 680 3223 202 118 27 chr11 12501804 12502704 -109341152 - Lx2B LINE L1 -8 6992 6011 5 680 11537 62 4 7 chr11 12502712 12504981 -109338875 - L1Md_F2 LINE L1 -10 6572 4315 6 680 239 100 100 0 chr11 12504978 12505018 -109338838 - Lx2 LINE L1 -973 6024 5981 7 680 2075 160 37 0 chr11 12505021 12505396 -109338460 + Lx3C LINE L1 5587 5975 -1001 8 680 635 342 73 27 chr11 12505660 12505921 -109337935 - MLT1A0 LTR MaLR 0 365 93 9 680 496 227 185 6 chr11 12507094 12507267 -109336589 - MER2 DNA MER2_type -121 224 21 1 680 368 284 131 23 chr11 12507476 12507666 -109336190 - MTEa LTR MaLR 0 379 143 1 680 2441 118 27 27 chr11 12507669 12507995 -109335861 + Lx2 LINE L1 6597 6927 -70 1 680 2770 64 0 0 chr11 12507995 12508341 -109335515 - ORR1A1 LTR MaLR 0 346 1 1 680 2441 118 27 27 chr11 12508341 12508415 -109335441 + Lx2 LINE L1 6928 6997 0 1 680 22 35 0 0 chr11 12508497 12508526 -109335330 + AT_rich Low_complexity Low_complexity 1 29 0 1 680 733 78 0 65 chr11 12508539 12508663 -109335193 - L1_Mus1 LINE L1 -6 6561 6446 1 680 5262 98 35 113 chr11 12508665 12508951 -109334905 - L1_Mm LINE L1 -669 5214 4897 1 680 1074 16 0 0 chr11 12508951 12509075 -109334781 + (TTC)n Simple_repeat Simple_repeat 3 126 0 1 680 472 178 47 56 chr11 12509075 12509182 -109334674 - B1_Mm SINE Alu -11 136 31 1 680 5262 98 35 113 chr11 12509182 12509828 -109334028 - L1_Mm LINE L1 -987 4896 4257 1 680 1253 165 24 0 chr11 12510015 12510227 -109333629 + RMER6D LTR ERVK 1 217 -503 1 680 2594 203 20 4 chr11 12510822 12510963 -109332893 + RMER6D LTR ERVK 214 360 -360 1 680 423 0 0 0 chr11 12510963 12511010 -109332846 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 680 2594 203 20 4 chr11 12511010 12511367 -109332489 + RMER6D LTR ERVK 361 719 -1 1 680 909 293 112 21 chr11 12511375 12511636 -109332220 + Tigger7 DNA MER2_type 35 323 -2168 2 680 578 307 128 11 chr11 12511636 12512011 -109331845 - MTD LTR MaLR 0 419 1 2 680 909 293 112 21 chr11 12512011 12512080 -109331776 + Tigger7 DNA MER2_type 324 395 -2096 2 680 420 246 28 42 chr11 12512081 12512225 -109331631 + Tigger7 DNA MER2_type 2201 2342 -149 2 680 444 294 57 70 chr11 12512390 12512547 -109331309 - MTEa LTR MaLR -224 155 1 1 680 278 81 0 0 chr11 12512648 12512685 -109331171 - RMER6A LTR ERVK -62 694 658 2 680 523 108 24 0 chr11 12512678 12512761 -109331095 - B2_Mm2 SINE B2 -108 87 3 2 680 1417 339 51 47 chr11 12512761 12513330 -109330526 - MTE-int LTR MaLR -80 1500 930 2 680 620 365 58 17 chr11 12513430 12513840 -109330016 - MTE-int LTR MaLR -1083 497 71 2 680 684 334 63 25 chr11 12513896 12514261 -109329595 - MTEb LTR MaLR 0 379 1 2 680 472 290 58 0 chr11 12514324 12514479 -109329377 + Tigger7 DNA MER2_type 2327 2490 -1 2 680 862 158 13 27 chr11 12515448 12515598 -109328258 - B1_Mur4 SINE Alu -2 148 1 2 680 411 59 0 10 chr11 12515874 12515935 -109327921 + ORR1D2 LTR MaLR 1 57 -321 2 680 264 59 0 0 chr11 12516256 12516290 -109327566 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2 680 541 182 0 43 chr11 12516348 12516463 -109327393 - Lx7 LINE L1 -351 7345 7236 3 680 421 288 88 0 chr11 12516578 12516703 -109327153 + MTE-int LTR MaLR 1387 1522 -58 3 680 372 266 90 68 chr11 12516779 12516912 -109326944 + MTEa LTR MaLR 236 371 -8 3 680 377 309 9 26 chr11 12517209 12517322 -109326534 + PB1D10 SINE Alu 7 117 0 3 680 296 292 11 0 chr11 12518476 12518565 -109325291 + (TA)n Simple_repeat Simple_repeat 1 90 0 3 680 5515 225 40 5 chr11 12519139 12520432 -109323424 + Lx9 LINE L1 6306 7643 -1 3 680 327 263 65 0 chr11 12520630 12520733 -109323123 - MTE-int LTR MaLR -273 1307 1213 3 680 1413 255 5 93 chr11 12520733 12521143 -109322713 + MTE2a LTR MaLR 1 374 -5 3 680 950 329 81 32 chr11 12521144 12521744 -109322112 - MTE-int LTR MaLR -358 1222 387 3 680 2656 68 8 19 chr11 12521745 12522117 -109321739 + MTA_Mm LTR MaLR 1 368 -28 3 680 15961 128 7 74 chr11 12522118 12525287 -109318569 - L1_Mm LINE L1 -470 5413 2459 3 680 1981 88 7 7 chr11 12525288 12525595 -109318261 - L1Md_F2 LINE L1 0 6582 6291 4 680 806 83 80 36 chr11 12525595 12525733 -109318123 + MTA_Mm LTR MaLR 253 396 0 4 680 987 306 63 12 chr11 12525733 12526087 -109317769 - MTE-int LTR MaLR -1193 387 1 3 680 325 310 70 76 chr11 12526091 12526262 -109317594 - MTEa LTR MaLR -3 376 207 4 680 275 315 214 9 chr11 12526771 12526883 -109316973 + MER31B LTR ERV1 113 247 -219 4 680 559 320 39 10 chr11 12526898 12527103 -109316753 - MLT1B LTR MaLR -48 342 132 4 680 19197 118 8 51 chr11 12527132 12531505 -109312351 - L1_Mus3 LINE L1 -7 6631 2463 4 680 6600 63 11 5 chr11 12531505 12532421 -109311435 - L1Md_F2 LINE L1 0 6582 5669 4 680 2380 108 3 0 chr11 12532420 12532969 -109310887 + L1Md_A LINE L1 1029 1580 -4303 4 680 5273 120 145 5 chr11 12532964 12533972 -109309884 - L1_Mus3 LINE L1 -3415 2468 1320 4 680 2763 155 14 35 chr11 12534058 12534566 -109309290 + RLTR25B LTR ERVK 532 1028 0 4 680 3077 204 47 32 chr11 12534568 12535277 -109308579 - Lx6 LINE L1 -359 7101 6383 4 680 38 22 0 0 chr11 12535356 12535401 -109308455 + AT_rich Low_complexity Low_complexity 1 45 0 5 680 1950 207 183 19 chr11 12535703 12536293 -109307563 - Lx7 LINE L1 0 7696 7010 5 680 712 144 8 0 chr11 12536295 12536413 -109307443 - Lx4A LINE L1 -306 6752 6634 5 680 1805 147 7 0 chr11 12536860 12537152 -109306704 - Lx4A LINE L1 -424 6634 6341 5 680 232 331 63 110 chr11 12537605 12537904 -109305952 + RLTR12B LTR ERVK 29 313 -215 5 680 34657 48 19 0 chr11 12537949 12543169 -109300687 + L1Md_T LINE L1 263 5585 -298 5 680 8130 52 0 0 chr11 12543170 12544200 -109299656 + L1Md_T LINE L1 5587 6582 0 5 680 228 376 64 0 chr11 12544294 12544403 -109299453 - MTEa LTR MaLR -261 118 3 4 680 228 320 26 0 chr11 12545721 12545799 -109298057 - ID4 SINE ID -2 81 2 5 680 229 308 70 34 chr11 12546722 12546909 -109296947 - MIR SINE MIR -66 202 15 5 680 315 0 0 0 chr11 12547238 12547273 -109296583 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 680 2103 148 25 11 chr11 12547503 12547855 -109296001 + ORR1B1 LTR MaLR 1 357 -37 5 680 1173 57 22 54 chr11 12547855 12547882 -109295974 + MTB LTR MaLR 1 23 -377 5 680 216 0 0 0 chr11 12547882 12547906 -109295950 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 680 1173 57 22 54 chr11 12547906 12548063 -109295793 + MTB LTR MaLR 24 179 -221 5 680 1541 105 0 5 chr11 12548461 12548681 -109295175 + MTB LTR MaLR 182 400 0 5 680 236 88 0 0 chr11 12548681 12548715 -109295141 + ORR1B1 LTR MaLR 353 386 -8 6 680 4278 111 18 6 chr11 12549227 12549855 -109294001 - Lx2 LINE L1 0 6997 6363 6 680 547 211 0 0 chr11 12549864 12549968 -109293888 - RLTR24 LTR ERV1 -423 106 3 6 680 4762 41 0 0 chr11 12549995 12550562 -109293294 - L1Md_T LINE L1 0 6582 6016 6 680 1939 228 80 121 chr11 12550714 12551732 -109292124 - RLTR19-int LTR ERVK -1761 4376 3401 6 680 280 237 77 117 chr11 12551958 12552154 -109291702 - RLTR19-int LTR ERVK -3100 3037 2850 6 680 353 294 52 20 chr11 12552178 12552401 -109291455 - RLTR19-int LTR ERVK -1468 7491 7378 6 680 1799 187 49 9 chr11 12552405 12552750 -109291106 - ORR1B2 LTR MaLR -8 359 1 6 680 641 238 129 49 chr11 12552811 12553246 -109290610 - RLTR19-int LTR ERVK -3268 2254 1870 6 680 1478 188 11 4 chr11 12553404 12553666 -109290190 - RLTR14 LTR ERV1 -72 310 47 6 680 276 196 30 40 chr11 12553676 12553777 -109290079 - RLTR19-int LTR ERVK -4261 1145 1046 6 680 299 151 291 0 chr11 12553930 12554016 -109289840 - RLTR42-int LTR ERVK -4307 1215 1105 6 680 3232 45 25 0 chr11 12554421 12554822 -109289034 - RLTR10A LTR ERVK 0 411 1 6 680 1189 188 147 7 chr11 12555623 12555896 -109287960 - RLTR24 LTR ERV1 0 529 219 7 680 239 279 126 95 chr11 12555902 12556124 -109287732 - RLTR17 LTR ERVK 0 692 464 7 680 195 42 0 0 chr11 12556152 12556176 -109287680 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 680 3461 147 21 59 chr11 12556178 12556842 -109287014 + RLTR26 LTR ERVK 4 642 0 7 680 2145 165 40 26 chr11 12556855 12557309 -109286547 - RLTR31_Mm LTR ERVK -101 460 1 7 680 1197 162 10 0 chr11 12557310 12557508 -109286348 - RLTR24 LTR ERV1 -324 205 6 7 680 849 258 120 11 chr11 12558028 12558295 -109285561 + RMER5 LTR ERV1 13 308 -226 7 680 1388 212 118 54 chr11 12558298 12558687 -109285169 - MTD LTR MaLR -5 414 1 7 680 270 56 0 0 chr11 12558723 12558759 -109285097 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 7 680 426 151 0 0 chr11 12558788 12558861 -109284995 + (TATG)n Simple_repeat Simple_repeat 3 75 0 7 680 594 234 76 19 chr11 12558862 12559019 -109284837 + RMER5 LTR ERV1 369 534 0 7 680 1449 160 4 57 chr11 12560503 12560782 -109283074 + RLTR24 LTR ERV1 1 264 -265 7 680 1526 193 35 60 chr11 12560752 12561099 -109282757 + RLTR24 LTR ERV1 166 503 -26 7 680 306 277 9 26 chr11 12562125 12562240 -109281616 - MER57A-int LTR ERV1 -271 5916 5804 8 680 3105 34 2 79 chr11 12562439 12562859 -109280997 - RLTR10 LTR ERVK -2 388 1 8 680 16111 29 7 4 chr11 12562861 12564855 -109279001 - RLTR10-int LTR ERVK -3 1984 8 8 680 3125 33 2 78 chr11 12564855 12565277 -109278579 - RLTR10 LTR ERVK 0 390 1 8 680 1761 145 58 85 chr11 12565909 12566274 -109277582 - ORR1B1 LTR MaLR -8 386 1 8 680 2292 203 19 15 chr11 12566571 12567050 -109276806 + RLTR16 LTR ERVK 25 505 0 8 680 576 309 43 12 chr11 12567318 12567482 -109276374 - MTEa LTR MaLR -10 369 201 8 680 255 61 0 0 chr11 12567485 12567518 -109276338 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 680 267 56 0 0 chr11 12567568 12567604 -109276252 - RMER19C LTR ERVK -575 36 1 8 680 342 376 16 8 chr11 12570360 12570486 -109273370 - MIRb SINE MIR -139 129 3 8 680 248 322 74 8 chr11 12570897 12571019 -109272837 - MIR SINE MIR -63 199 70 8 680 320 382 40 26 chr11 12571447 12571673 -109272183 + HAL1 LINE L1 1539 1767 -740 9 680 22 35 0 0 chr11 12571784 12571813 -109272043 + AT_rich Low_complexity Low_complexity 1 29 0 9 680 258 273 119 20 chr11 12571843 12571944 -109271912 - MLT1A LTR MaLR -28 346 236 9 680 936 351 122 93 chr11 12572702 12573723 -109270133 - MLT1A0-int LTR MaLR -3 1732 699 9 680 333 0 0 0 chr11 12573723 12573760 -109270096 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 680 1079 293 118 36 chr11 12573760 12574367 -109269489 - MLT1A0-int LTR MaLR -1037 698 57 9 680 4578 125 25 1 chr11 12574398 12575080 -109268776 - Lx LINE L1 -6 6648 5951 9 680 239 289 138 72 chr11 12575114 12575252 -109268604 - MLT1A0 LTR MaLR -15 350 204 9 680 1984 194 32 32 chr11 12575318 12575760 -109268096 + RMER10A LTR ERVL 1 442 0 9 680 230 326 11 23 chr11 12575922 12576010 -109267846 - RMER12 LTR ERVK -486 836 750 9 680 1978 84 45 17 chr11 12576476 12576768 -109267088 - L1Md_F2 LINE L1 0 6582 6283 9 680 657 126 0 0 chr11 12577349 12577460 -109266396 + (TA)n Simple_repeat Simple_repeat 2 112 0 9 680 1439 257 16 5 chr11 12577461 12577841 -109266015 - Lx7 LINE L1 -379 7317 6934 1 680 253 289 36 12 chr11 12578021 12578105 -109265751 - RMER15 LTR ERVL -36 539 454 1 680 301 224 79 0 chr11 12578534 12578610 -109265246 - L1M4 LINE L1 -705 5419 5338 1 680 355 309 32 51 chr11 12578809 12578966 -109264890 - RSINE1 SINE B4 -11 154 1 1 680 467 33 16 0 chr11 12579010 12579071 -109264785 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1 680 668 267 47 40 chr11 12579338 12579630 -109264226 + MLT1A1 LTR MaLR 1 397 -11 1 680 337 333 45 62 chr11 12579641 12579884 -109263972 - L1M4 LINE L1 -1413 4733 4495 1 680 510 197 14 7 chr11 12580282 12580430 -109263426 + (TG)n Simple_repeat Simple_repeat 2 150 0 1 680 487 331 152 49 chr11 12580431 12580695 -109263161 - B4A SINE B4 0 292 2 1 680 601 315 9 31 chr11 12580725 12580948 -109262908 - ID_B1 SINE B4 -5 219 2 1 680 1251 107 5 21 chr11 12580954 12580991 -109262865 - B2_Mm2 SINE B2 -7 188 155 1 680 264 30 0 0 chr11 12580991 12581024 -109262832 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 680 1251 107 5 21 chr11 12581024 12581177 -109262679 - B2_Mm2 SINE B2 -41 154 1 1 680 369 365 111 25 chr11 12581212 12581527 -109262329 - L1M4 LINE L1 -2008 4138 3797 1 680 1276 26 0 0 chr11 12581853 12582008 -109261848 - L1Md_A LINE L1 -351 5532 5378 1 680 357 100 0 0 chr11 12581998 12582048 -109261808 + L1Md_A LINE L1 5537 5586 -297 1 10 8162 30 24 0 chr11 12582048 12583019 -109260837 + L1Md_A LINE L1 5587 6580 -2 1 681 2695 63 3 3 chr11 12583336 12583687 -109260169 + L1_Mus2 LINE L1 6216 6566 0 1 681 231 304 25 0 chr11 12584635 12584714 -109259142 + L2c LINE L2 3238 3318 -69 1 681 933 276 51 62 chr11 12586412 12586802 -109257054 + MLT1B LTR MaLR 1 386 -4 1 681 336 303 196 13 chr11 12586942 12587166 -109256690 - MLT1F1 LTR MaLR 0 569 305 1 681 372 343 165 40 chr11 12587603 12587852 -109256004 + B4A SINE B4 2 281 -11 1 681 324 0 0 0 chr11 12587885 12587921 -109255935 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 681 999 150 0 0 chr11 12589242 12589389 -109254467 + B1_Mus1 SINE Alu 1 147 -1 1 681 236 327 37 18 chr11 12589745 12589854 -109254002 + PB1D9 SINE Alu 1 111 -9 1 681 832 216 103 0 chr11 12590208 12590402 -109253454 - URR1A DNA MER1_type -6 220 7 1 681 193 268 18 0 chr11 12591451 12591507 -109252349 - MIRc SINE MIR -104 164 108 1 681 266 73 24 0 chr11 12591842 12591883 -109251973 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 681 2690 108 5 2 chr11 12592055 12592463 -109251393 + L1_Mus4 LINE L1 6227 6635 -1 1 681 460 333 53 0 chr11 12592616 12592748 -109251108 + RSINE1 SINE B4 3 141 -24 1 681 405 0 0 0 chr11 12592749 12592794 -109251062 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 681 502 209 0 0 chr11 12593211 12593321 -109250535 + RMER1B Other Other 45 154 -912 1 681 414 39 0 0 chr11 12594682 12594734 -109249122 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 681 591 277 95 0 chr11 12594735 12594872 -109248984 - B3 SINE B2 -65 151 2 1 681 387 0 0 0 chr11 12594968 12595011 -109248845 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 681 429 294 9 0 chr11 12595486 12595595 -109248261 - PB1D10 SINE Alu 0 117 8 1 681 218 312 25 12 chr11 12595745 12595826 -109248030 + L4 LINE RTE 1774 1855 -174 1 681 1096 193 192 57 chr11 12596222 12596591 -109247265 + MTD LTR MaLR 1 419 0 1 681 315 0 0 0 chr11 12596765 12596800 -109247056 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 1 681 1224 315 181 34 chr11 12596829 12598046 -109245810 - L1_Rod LINE L1 -634 5246 3937 1 681 472 342 28 31 chr11 12598046 12598336 -109245520 - B4A SINE B4 -2 290 2 1 681 1264 315 181 34 chr11 12598336 12599888 -109243968 - L1_Rod LINE L1 -1944 3936 2072 1 681 21 57 0 0 chr11 12600037 12600072 -109243784 + AT_rich Low_complexity Low_complexity 1 35 0 1 681 4042 91 16 2 chr11 12600180 12600797 -109243059 - MusHAL1 LINE L1 -902 1810 1185 1 681 642 101 0 0 chr11 12603006 12603115 -109240741 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 681 351 0 0 0 chr11 12603115 12603154 -109240702 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 681 269 222 27 18 chr11 12603421 12603531 -109240325 + (TTATA)n Simple_repeat Simple_repeat 5 115 0 1 681 24 0 0 0 chr11 12605100 12605124 -109238732 + AT_rich Low_complexity Low_complexity 1 24 0 1 681 1057 131 94 20 chr11 12605124 12605326 -109238530 - Lx2 LINE L1 -6 6991 6775 1 681 8494 150 35 6 chr11 12605326 12607783 -109236073 - Lx2 LINE L1 -354 6643 4120 1 681 207 0 0 0 chr11 12607790 12607813 -109236043 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 681 10689 107 68 33 chr11 12607824 12610436 -109233420 - L1VL4 LINE L1 -847 2712 1 1 681 552 68 0 0 chr11 12610443 12610516 -109233340 + (TTTCC)n Simple_repeat Simple_repeat 3 75 0 1 681 3579 47 28 18 chr11 12610539 12610997 -109232859 - L1Md_F3 LINE L1 0 6584 6122 1 681 1344 134 4 78 chr11 12611340 12611583 -109232273 - L1_Mus2 LINE L1 -1 6565 6341 1 681 2750 146 16 64 chr11 12611631 12612584 -109231272 - L1Md_F LINE L1 -2473 1344 431 1 681 1162 218 24 14 chr11 12612587 12612880 -109230976 - Lx5 LINE L1 0 7050 6755 1 681 1167 187 98 0 chr11 12612879 12613125 -109230731 + Lx5 LINE L1 6302 6571 -479 1 681 336 300 75 72 chr11 12613125 12613378 -109230478 + MTEb LTR MaLR 103 379 0 1 681 939 234 143 71 chr11 12613412 12613889 -109229967 + RMER2 LTR ERV1 1 562 -5 1 681 1011 284 168 13 chr11 12613976 12614527 -109229329 - Lx8 LINE L1 -259 7214 6578 1 681 198 0 0 0 chr11 12614536 12614558 -109229298 + (T)n Simple_repeat Simple_repeat 1 22 0 1 681 229 263 175 81 chr11 12614796 12615007 -109228849 + MT2A LTR ERVL 303 533 0 1 681 390 57 0 0 chr11 12615468 12615521 -109228335 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 681 316 234 61 41 chr11 12615875 12615973 -109227883 + MTEa LTR MaLR 278 377 -2 1 681 192 125 0 0 chr11 12616532 12616564 -109227292 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 681 1848 283 57 94 chr11 12616979 12618250 -109225606 + L1_Mur3 LINE L1 3638 4860 -1020 1 681 351 98 0 0 chr11 12618777 12618838 -109225018 + (CCAA)n Simple_repeat Simple_repeat 2 62 0 1 681 835 240 101 119 chr11 12618923 12619145 -109224711 - Lx8 LINE L1 -5 7468 7219 1 681 1151 58 0 0 chr11 12619145 12619283 -109224573 + B1_Mm SINE Alu 1 138 -9 1 681 257 0 30 0 chr11 12619283 12619316 -109224540 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 681 835 240 101 119 chr11 12619316 12619528 -109224328 - Lx8 LINE L1 -255 7218 7042 1 681 822 76 41 0 chr11 12619553 12619698 -109224158 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 1 681 1267 278 103 28 chr11 12619861 12620694 -109223162 - Lx8 LINE L1 -1625 6019 5080 1 681 180 0 0 0 chr11 12622035 12622055 -109221801 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 681 29 28 0 0 chr11 12622093 12622129 -109221727 + AT_rich Low_complexity Low_complexity 1 36 0 1 681 605 216 0 9 chr11 12622175 12622287 -109221569 - B3 SINE B2 -101 115 5 1 681 252 0 0 0 chr11 12624303 12624331 -109219525 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 681 226 160 20 0 chr11 12624597 12624647 -109219209 + A-rich Low_complexity Low_complexity 6 56 0 1 681 598 274 51 56 chr11 12625993 12626171 -109217685 - B3 SINE B2 -37 179 3 1 681 331 179 51 0 chr11 12626318 12626396 -109217460 + Lx3C LINE L1 6886 6967 -9 1 681 339 25 0 0 chr11 12626401 12626441 -109217415 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1 681 205 211 0 0 chr11 12626583 12626621 -109217235 + A-rich Low_complexity Low_complexity 1 38 0 1 681 251 379 35 0 chr11 12626915 12627002 -109216854 - MTEa LTR MaLR -271 108 19 1 681 912 356 56 27 chr11 12627096 12627249 -109216607 + MER74A LTR ERVL 1 150 -408 1 681 589 298 80 28 chr11 12627249 12627601 -109216255 + MLT1A LTR MaLR 5 374 0 1 681 912 356 56 27 chr11 12627601 12627860 -109215996 + MER74A LTR ERVL 151 425 -133 1 681 25 65 0 0 chr11 12627861 12627907 -109215949 + AT_rich Low_complexity Low_complexity 1 46 0 1 681 7144 70 0 3 chr11 12627907 12629521 -109214335 - L1Md_F2 LINE L1 -17 6565 4959 1 681 467 322 22 28 chr11 12630983 12631165 -109212691 + B3A SINE B2 2 182 -16 1 681 505 308 46 36 chr11 12631235 12631454 -109212402 + Lx8 LINE L1 6799 7019 -454 1 681 1455 273 51 3 chr11 12631504 12631878 -109211978 - MTD LTR MaLR -14 405 14 1 681 806 265 80 59 chr11 12631928 12632265 -109211591 + Lx8 LINE L1 7101 7444 -29 1 681 1135 203 18 18 chr11 12632269 12632469 -109211387 - URR1B DNA MER1_type -4 221 21 1 681 3298 38 10 0 chr11 12632469 12632860 -109210996 + MTA_Mm LTR MaLR 1 395 -1 1 681 1135 203 18 18 chr11 12632860 12632880 -109210976 - URR1B DNA MER1_type -205 20 1 1 681 6569 229 77 21 chr11 12632940 12633827 -109210029 - Lx6 LINE L1 -5 7455 6503 1 681 1326 73 0 0 chr11 12633827 12634032 -109209824 + (TTCTC)n Simple_repeat Simple_repeat 1 205 0 1 681 11437 189 116 20 chr11 12634032 12637600 -109206256 - Lx6 LINE L1 -958 6502 2588 1 681 717 162 12 12 chr11 12637599 12637768 -109206088 - Lx6 LINE L1 -4163 1717 1549 1 681 1247 316 27 22 chr11 12637827 12638517 -109205339 - Lx6 LINE L1 -7042 686 17 1 681 186 209 0 0 chr11 12638521 12638564 -109205292 + GA-rich Low_complexity Low_complexity 1 43 0 1 681 201 196 0 0 chr11 12638739 12638790 -109205066 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 681 22 35 0 0 chr11 12639670 12639699 -109204157 + AT_rich Low_complexity Low_complexity 1 29 0 1 681 3742 171 48 5 chr11 12639807 12640470 -109203386 - RLTR17 LTR ERVK 0 692 1 1 681 2885 83 2 24 chr11 12640501 12640910 -109202946 - L1_Mus2 LINE L1 0 6566 6167 1 681 184 357 105 49 chr11 12641857 12642019 -109201837 - MIR3 SINE MIR -6 202 32 1 681 312 351 9 0 chr11 12643371 12643485 -109200371 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 681 613 240 32 52 chr11 12643577 12643602 -109200254 - RSINE1 SINE B4 -3 162 140 1 681 333 47 0 0 chr11 12643602 12643645 -109200211 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 681 613 242 34 49 chr11 12643645 12643783 -109200073 - RSINE1 SINE B4 -26 139 1 1 681 255 140 0 0 chr11 12643838 12643888 -109199968 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 1 681 403 311 19 0 chr11 12643889 12643992 -109199864 - B4 SINE B4 -108 184 80 1 681 359 151 35 0 chr11 12644006 12644092 -109199764 - Lx9 LINE L1 0 7644 7556 1 681 25 31 0 0 chr11 12644094 12644126 -109199730 + AT_rich Low_complexity Low_complexity 1 32 0 1 681 808 238 61 10 chr11 12644136 12644429 -109199427 + L1_Rod LINE L1 3254 3561 -2286 1 681 361 238 0 45 chr11 12644460 12644548 -109199308 - B4 SINE B4 -206 86 3 1 681 1642 42 4 53 chr11 12645384 12645612 -109198244 - L1Md_T LINE L1 0 6582 6366 2 681 23 68 0 0 chr11 12646566 12646610 -109197246 + AT_rich Low_complexity Low_complexity 1 44 0 2 681 698 88 120 42 chr11 12647041 12647183 -109196673 - L1Md_F2 LINE L1 -2 6580 6428 2 681 6157 74 5 19 chr11 12647169 12648500 -109195356 + L1Md_F2 LINE L1 5130 6453 -129 2 681 193 340 39 67 chr11 12648702 12648806 -109195050 - MER5B DNA MER1_type -73 105 5 2 681 1395 46 0 0 chr11 12649156 12649330 -109194526 - L1Md_T LINE L1 -2 6580 6407 2 681 333 293 126 7 chr11 12649703 12649854 -109194002 - MIR SINE MIR -53 209 41 2 681 24 0 0 0 chr11 12650417 12650441 -109193415 + AT_rich Low_complexity Low_complexity 1 24 0 2 681 34768 42 15 12 chr11 12650441 12652085 -109191771 - L1Md_T LINE L1 -5 6577 4910 2 681 228 183 46 77 chr11 12652085 12652150 -109191706 + RMER20A LTR ERVK 186 248 -268 2 681 34768 42 15 12 chr11 12652150 12655801 -109188055 - L1Md_T LINE L1 -5 4909 1203 2 681 7523 74 0 16 chr11 12655767 12656855 -109187001 - L1Md_Gf LINE L1 -5380 1142 73 2 681 2189 99 3 58 chr11 12659478 12659820 -109184036 + L1_Mus2 LINE L1 6244 6566 0 2 681 186 174 0 0 chr11 12660810 12660856 -109183000 + T-rich Low_complexity Low_complexity 1 46 0 2 681 1125 76 0 14 chr11 12660857 12661004 -109182852 - B1_Mm SINE Alu -1 146 2 2 681 1257 191 88 0 chr11 12661009 12661282 -109182574 - ORR1D1 LTR MaLR -8 366 70 2 681 2618 163 66 0 chr11 12661290 12661792 -109182064 - Lx4A LINE L1 -493 6565 6031 2 681 1961 186 31 3 chr11 12661792 12662147 -109181709 + Lx4A LINE L1 6694 7058 0 2 681 25 51 0 0 chr11 12662192 12662231 -109181625 + AT_rich Low_complexity Low_complexity 1 39 0 2 681 240 182 0 0 chr11 12662270 12662314 -109181542 - ORR1D1 LTR MaLR -340 44 1 2 681 1362 301 73 14 chr11 12662326 12663337 -109180519 + L1MA5A LINE L1 4406 5495 -802 2 681 425 331 7 40 chr11 12663340 12663491 -109180365 + B3A SINE B2 5 150 -48 2 681 363 23 0 0 chr11 12663496 12663540 -109180316 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 681 557 319 16 49 chr11 12663608 12663974 -109179882 + L1MA5A LINE L1 5571 5924 -373 2 681 21 36 0 0 chr11 12664157 12664185 -109179671 + AT_rich Low_complexity Low_complexity 1 28 0 2 681 416 19 19 0 chr11 12664558 12664611 -109179245 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 681 1236 34 7 0 chr11 12664940 12665086 -109178770 + B1_Mm SINE Alu 1 147 0 2 681 195 23 62 83 chr11 12665092 12665140 -109178716 + A-rich Low_complexity Low_complexity 2 48 0 2 681 709 257 192 26 chr11 12665144 12665612 -109178244 - L1MA5 LINE L1 -437 5863 5318 2 681 512 285 96 10 chr11 12665659 12665950 -109177906 - L1M3 LINE L1 -895 5245 4930 2 681 290 269 0 115 chr11 12666183 12666305 -109177551 + L1MA5A LINE L1 6113 6220 -71 2 681 234 0 0 0 chr11 12666504 12666530 -109177326 + (T)n Simple_repeat Simple_repeat 1 26 0 2 681 504 274 28 49 chr11 12668214 12668347 -109175509 + MTEa LTR MaLR 1 130 -249 2 681 1282 288 12 19 chr11 12668347 12668666 -109175190 - MTE2b LTR MaLR 0 379 63 2 681 293 295 0 93 chr11 12668586 12668683 -109175173 - MT2A LTR ERVL -393 140 53 2 681 1254 239 74 35 chr11 12668701 12669134 -109174722 + Lx7 LINE L1 545 994 -6734 2 681 546 93 0 0 chr11 12669141 12669227 -109174629 + (CA)n Simple_repeat Simple_repeat 2 87 0 2 681 583 184 70 7 chr11 12669228 12669370 -109174486 + Lx7 LINE L1 1028 1178 -6550 2 681 3084 149 19 3 chr11 12669365 12669937 -109173919 + Lx2 LINE L1 4830 5410 -467 2 681 4948 197 12 23 chr11 12669937 12670855 -109173001 - RMER13B LTR ERVK 0 908 1 2 681 5884 151 84 1 chr11 12670856 12672319 -109171537 + Lx2 LINE L1 5411 6997 0 2 681 320 188 50 0 chr11 12672317 12672397 -109171459 + Lx7 LINE L1 1174 1257 -6471 2 681 330 115 58 0 chr11 12672399 12672451 -109171405 - ORR1A3 LTR MaLR 0 326 272 2 681 33613 72 5 10 chr11 12672480 12678606 -109165250 - L1Md_F2 LINE L1 0 6582 491 2 681 1632 147 0 84 chr11 12678606 12678917 -109164939 - ORR1A3 LTR MaLR -41 285 1 2 681 9323 200 55 72 chr11 12678921 12679611 -109164245 + Lx7 LINE L1 1259 1967 -3913 2 681 504 48 0 0 chr11 12679611 12679674 -109164182 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 2 681 9323 200 55 72 chr11 12679674 12681033 -109162823 + Lx7 LINE L1 1968 3314 -2566 2 681 285 139 0 9 chr11 12681033 12681088 -109162768 + MTD LTR MaLR 312 416 -3 2 681 9323 200 55 72 chr11 12681088 12682101 -109161755 + Lx7 LINE L1 3315 4320 -1560 2 681 878 172 0 6 chr11 12682157 12682321 -109161535 - L1_Mur3 LINE L1 -1285 4595 4433 2 681 1295 135 65 31 chr11 12682321 12682550 -109161306 - ORR1A4 LTR MaLR -92 237 1 2 681 9297 152 39 132 chr11 12682550 12682956 -109160900 - ORR1A4-int LTR MaLR 0 1963 1678 2 681 1130 82 0 0 chr11 12682956 12683103 -109160753 - B1_Mus1 SINE Alu 0 148 2 2 681 9297 152 39 132 chr11 12683103 12684860 -109158996 - ORR1A4-int LTR MaLR -286 1677 1 2 681 1149 184 8 46 chr11 12684860 12685099 -109158757 - ORR1A4 LTR MaLR 0 329 100 2 681 5366 201 13 10 chr11 12685099 12686316 -109157540 + Lx7 LINE L1 4603 6985 -711 2 681 774 169 0 0 chr11 12686333 12686475 -109157381 + (TA)n Simple_repeat Simple_repeat 1 142 0 2 681 590 229 119 13 chr11 12686530 12686756 -109157100 + Lx7 LINE L1 7447 7696 0 2 681 212 158 0 0 chr11 12687706 12687744 -109156112 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 681 266 153 0 34 chr11 12687784 12687872 -109155984 + T-rich Low_complexity Low_complexity 1 85 0 2 681 1095 69 7 0 chr11 12687872 12688016 -109155840 - B1_Mus1 SINE Alu 0 148 4 2 681 1417 58 0 10 chr11 12688129 12688322 -109155534 - L1Md_F2 LINE L1 -646 5936 5746 2 681 3931 87 86 35 chr11 12688322 12688930 -109154926 + L1Md_F2 LINE L1 5931 6569 -13 2 681 186 43 0 0 chr11 12688939 12688962 -109154894 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 2 681 16135 40 30 22 chr11 12689126 12690789 -109153067 - L1Md_F3 LINE L1 0 6584 4890 2 681 229 183 46 77 chr11 12690789 12690854 -109153002 + RMER20A LTR ERVK 186 248 -268 2 681 16135 40 30 22 chr11 12690854 12692064 -109151792 - L1Md_F3 LINE L1 0 4889 3655 2 681 21 57 0 0 chr11 12692645 12692680 -109151176 + AT_rich Low_complexity Low_complexity 1 35 0 2 681 1186 55 7 0 chr11 12692716 12692861 -109150995 + B1_Mm SINE Alu 2 147 0 2 681 3131 115 106 0 chr11 12692939 12693503 -109150353 - L1VL2 LINE L1 -5404 931 308 2 681 273 353 13 20 chr11 12693962 12694115 -109149741 + GA-rich Low_complexity Low_complexity 2 153 0 2 681 324 83 0 0 chr11 12694340 12694388 -109149468 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 681 25 51 0 0 chr11 12694656 12694695 -109149161 + AT_rich Low_complexity Low_complexity 1 39 0 2 681 1328 218 39 39 chr11 12694922 12694952 -109148904 - MTD LTR MaLR 0 419 391 2 681 198 0 0 0 chr11 12694952 12694974 -109148882 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 681 1328 218 39 39 chr11 12694974 12695249 -109148607 - MTD LTR MaLR -29 390 114 2 681 521 252 0 0 chr11 12695285 12695384 -109148472 - MTD LTR MaLR -299 120 22 2 681 183 80 0 0 chr11 12695384 12695409 -109148447 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 681 2321 97 3 6 chr11 12695539 12695872 -109147984 + IAPLTR1a_Mm LTR ERVK 1 332 -5 2 681 51996 23 15 18 chr11 12695872 12702366 -109141490 + IAPEz-int LTR ERVK 6 6479 -2 2 681 2320 102 3 6 chr11 12702368 12702704 -109141152 + IAPLTR1a_Mm LTR ERVK 1 335 -2 2 681 462 232 0 0 chr11 12702932 12703070 -109140786 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 681 261 0 0 0 chr11 12703589 12703618 -109140238 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 681 591 15 0 0 chr11 12703618 12703685 -109140171 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 681 239 313 69 75 chr11 12705983 12706142 -109137714 - MER5B DNA MER1_type -3 175 18 2 681 236 296 24 12 chr11 12706154 12706236 -109137620 + MER5A DNA MER1_type 4 86 -103 2 681 1076 216 0 5 chr11 12706441 12706646 -109137210 - B3 SINE B2 -10 206 3 2 681 325 331 64 89 chr11 12710446 12710648 -109133208 + MLT1G3 LTR MaLR 223 419 -176 2 681 1487 154 0 0 chr11 12713412 12713652 -109130204 - L1_Mus3 LINE L1 -183 6455 6216 2 681 1096 118 11 6 chr11 12713652 12713831 -109130025 + L1_Mus3 LINE L1 6459 6638 0 2 682 1224 272 40 19 chr11 12714194 12714565 -109129291 + MTE2a LTR MaLR 1 379 0 2 682 210 37 0 0 chr11 12715688 12715715 -109128141 + (T)n Simple_repeat Simple_repeat 1 27 0 2 682 225 0 0 0 chr11 12716558 12716583 -109127273 + (T)n Simple_repeat Simple_repeat 1 25 0 2 682 216 0 0 0 chr11 12717541 12717565 -109126291 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 2 682 1739 240 20 44 chr11 12717565 12717974 -109125882 - Lx5 LINE L1 -19 7031 6633 2 682 1027 186 29 29 chr11 12717974 12718184 -109125672 - ORR1A4 LTR MaLR -119 210 1 2 682 1037 167 11 0 chr11 12718185 12718371 -109125485 - Lx5 LINE L1 -574 6476 6289 2 682 1244 173 13 31 chr11 12718356 12718651 -109125205 - Lx5 LINE L1 -962 6088 5796 2 682 23 0 0 0 chr11 12719171 12719194 -109124662 + AT_rich Low_complexity Low_complexity 1 23 0 2 682 2551 197 33 4 chr11 12720804 12721349 -109122507 + Lx9 LINE L1 6905 7465 -179 2 682 374 193 48 56 chr11 12721363 12721489 -109122367 + Lx9 LINE L1 7514 7638 -6 2 682 21 57 0 0 chr11 12721558 12721593 -109122263 + AT_rich Low_complexity Low_complexity 1 35 0 2 682 190 338 28 14 chr11 12721918 12721990 -109121866 - MER5A DNA MER1_type 0 189 117 2 682 202 261 22 0 chr11 12721960 12722006 -109121850 + MER5A DNA MER1_type 55 101 -88 2 682 468 0 0 0 chr11 12723070 12723122 -109120734 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 682 7047 113 91 5 chr11 12727285 12728464 -109115392 + Lx2A LINE L1 5727 7006 -2 2 682 1604 84 9 0 chr11 12728475 12728701 -109115155 + L1Md_F2 LINE L1 5359 5586 -297 2 682 7415 76 7 5 chr11 12728702 12729683 -109114173 + L1Md_F2 LINE L1 5588 6570 -12 2 682 249 169 0 0 chr11 12729965 12730024 -109113832 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 682 378 0 0 0 chr11 12730024 12730066 -109113790 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 682 396 0 0 0 chr11 12730066 12730109 -109113747 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 682 781 325 78 67 chr11 12730110 12730496 -109113360 - MLT1C LTR MaLR -77 390 1 2 682 360 346 26 0 chr11 12730582 12730735 -109113121 - MER5A1 DNA MER1_type -7 159 3 2 682 591 341 98 48 chr11 12731051 12731448 -109112408 - RLTR26 LTR ERVK -225 417 1 2 682 277 301 118 59 chr11 12732325 12732477 -109111379 + MER20 DNA MER1_type 2 162 -57 2 682 682 321 54 35 chr11 12732480 12732726 -109111130 - ORR1E LTR MaLR -2 357 105 2 682 3770 173 23 27 chr11 12732726 12733421 -109110435 - RLTR17 LTR ERVK 0 692 1 2 682 682 321 54 35 chr11 12733421 12733435 -109110421 - ORR1E LTR MaLR -255 104 92 2 682 26 0 0 0 chr11 12733720 12733746 -109110110 + AT_rich Low_complexity Low_complexity 1 26 0 2 682 1128 58 0 0 chr11 12734185 12734324 -109109532 - B1_Mm SINE Alu -8 139 1 2 682 219 36 0 0 chr11 12734449 12734477 -109109379 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 682 478 279 143 17 chr11 12735234 12735409 -109108447 + B3A SINE B2 1 197 -1 2 682 309 366 22 4 chr11 12735918 12736143 -109107713 - Lx9 LINE L1 -156 7488 7260 2 682 893 115 0 7 chr11 12738841 12738990 -109104866 + Lx LINE L1 6507 6654 0 2 682 652 215 0 83 chr11 12739038 12739170 -109104686 + B1_Mur2 SINE Alu 2 122 -27 2 682 186 43 0 0 chr11 12739170 12739193 -109104663 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 2 682 242 29 29 0 chr11 12739349 12739384 -109104472 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 2 682 378 297 77 11 chr11 12739504 12739615 -109104241 + L1M3 LINE L1 3301 3424 -2716 2 682 666 133 8 45 chr11 12739615 12739749 -109104107 + Lx2 LINE L1 6869 6997 0 2 682 378 297 77 11 chr11 12739749 12739909 -109103947 + L1M3 LINE L1 3425 3590 -2550 2 682 259 304 59 118 chr11 12740059 12740450 -109103406 + L1M3 LINE L1 3868 4235 -1905 2 682 5861 123 54 4 chr11 12740493 12741406 -109102450 - RMER17B LTR ERVK 0 958 1 3 682 579 380 104 12 chr11 12741586 12741914 -109101942 + Tigger7 DNA MER2_type 20 377 -2114 3 682 434 309 95 0 chr11 12742647 12742773 -109101083 - B1F SINE Alu -10 139 2 3 682 370 219 98 32 chr11 12742775 12742898 -109100958 - RMER13B LTR ERVK -771 137 7 3 682 435 19 0 0 chr11 12743204 12743256 -109100600 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 682 740 222 116 43 chr11 12745181 12745388 -109098468 - URR1A DNA MER1_type 0 226 5 3 682 208 344 130 0 chr11 12746231 12746423 -109097433 + L2 LINE L2 2367 2583 -836 3 682 1004 82 0 0 chr11 12746423 12746557 -109097299 - B1_Mus1 SINE Alu 0 148 15 3 682 319 283 105 70 chr11 12746458 12746629 -109097227 - MT2B2 LTR ERVL -320 264 88 3 682 444 19 0 0 chr11 12747802 12747855 -109096001 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 682 604 314 129 50 chr11 12748063 12748565 -109095291 - L1M5 LINE L1 -3442 2704 2163 3 682 576 293 59 55 chr11 12749654 12749943 -109093913 + B4 SINE B4 3 292 0 3 682 878 261 32 18 chr11 12750389 12750670 -109093186 - L1M5 LINE L1 -328 5796 5512 3 682 21 0 0 0 chr11 12752404 12752425 -109091431 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 438 36 0 0 chr11 12752604 12752660 -109091196 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 682 3299 186 47 57 chr11 12753095 12753803 -109090053 + RLTR25B LTR ERVK 1 701 -327 3 682 6307 122 14 30 chr11 12753803 12755753 -109088103 + L1_Mus3 LINE L1 4782 6638 0 3 682 417 204 11 0 chr11 12755754 12755842 -109088014 + RLTR25B LTR ERVK 688 776 -252 3 682 433 215 168 0 chr11 12755849 12755956 -109087900 + RLTR25B LTR ERVK 904 1028 0 3 682 1397 35 0 0 chr11 12756314 12756483 -109087373 + L1Md_F2 LINE L1 5418 5586 -297 3 682 8326 32 4 1 chr11 12756483 12757476 -109086380 + L1Md_F2 LINE L1 5587 6582 0 3 682 498 265 41 49 chr11 12759036 12759233 -109084623 - MTD LTR MaLR -53 366 97 3 682 273 22 65 0 chr11 12759257 12759303 -109084553 + (CAA)n Simple_repeat Simple_repeat 2 50 0 3 682 1280 231 6 29 chr11 12759601 12759913 -109083943 - Lx4B LINE L1 -124 6934 6630 3 682 2939 196 226 22 chr11 12759946 12760505 -109083351 - L1_Mur2 LINE L1 -3076 2801 2052 3 682 243 0 0 0 chr11 12760505 12760532 -109083324 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 682 2939 196 226 22 chr11 12760532 12761003 -109082853 - L1_Mur2 LINE L1 -3826 2051 1561 3 682 8960 71 0 0 chr11 12760998 12762240 -109081616 - L1Md_F2 LINE L1 -826 5057 3816 3 682 4355 68 2 2 chr11 12762239 12762830 -109081026 + L1Md_F2 LINE L1 4994 5584 -299 3 682 7319 86 0 12 chr11 12762832 12763828 -109080028 + L1Md_F2 LINE L1 5587 6570 -12 3 682 323 57 0 0 chr11 12763829 12763882 -109079974 + Lx LINE L1 6597 6649 -5 3 682 1269 190 32 37 chr11 12763898 12763982 -109079874 - L1_Mur2 LINE L1 -4300 1577 1501 3 682 4039 97 2 24 chr11 12763982 12764576 -109079280 - L1_Mus4 LINE L1 0 6636 6056 3 682 1269 198 93 27 chr11 12764576 12765152 -109078704 - L1_Mur2 LINE L1 -4377 1500 871 3 682 430 271 71 0 chr11 12766062 12766217 -109077639 + Lx8 LINE L1 6627 6792 -681 3 682 2771 190 56 4 chr11 12766219 12766705 -109077151 + RMER13B LTR ERVK 3 513 -395 3 682 369 304 46 73 chr11 12766801 12767118 -109076738 + L1MCa LINE L1 2295 2620 -3701 3 682 1597 176 58 90 chr11 12767172 12767516 -109076340 + ORR1B1 LTR MaLR 41 373 -21 3 682 261 320 14 7 chr11 12767559 12767707 -109076149 + L1MCa LINE L1 3875 4023 -2298 3 682 989 249 96 30 chr11 12767753 12768055 -109075801 + Lx6 LINE L1 6557 6878 -582 3 682 1688 213 209 8 chr11 12768111 12768599 -109075257 + RMER19B LTR ERVK 316 901 -1 3 682 1956 262 17 15 chr11 12768602 12769141 -109074715 + Lx6 LINE L1 6921 7460 0 3 682 356 40 0 20 chr11 12769269 12769320 -109074536 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 682 224 358 80 40 chr11 12769326 12769451 -109074405 - RSINE1 SINE B4 -33 132 3 3 682 326 337 40 0 chr11 12769620 12769795 -109074061 + L1MD LINE L1 4045 4226 -1920 3 682 378 0 0 0 chr11 12770152 12770194 -109073662 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 682 323 280 93 53 chr11 12770648 12770799 -109073057 + L1ME2 LINE L1 5362 5518 -644 3 682 297 0 0 0 chr11 12770859 12770892 -109072964 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 3 682 417 328 98 6 chr11 12771093 12771418 -109072438 + L1ME2 LINE L1 5794 6148 -16 3 682 206 327 75 0 chr11 12772881 12773032 -109070824 - MIRc SINE MIR -35 233 61 3 682 406 237 237 0 chr11 12773049 12773167 -109070689 + RMER30 DNA MER1_type 30 175 -27 3 682 369 131 0 0 chr11 12773322 12773383 -109070473 + (CATA)n Simple_repeat Simple_repeat 3 63 0 3 682 23 54 0 0 chr11 12775452 12775489 -109068367 + AT_rich Low_complexity Low_complexity 1 37 0 3 682 842 291 41 7 chr11 12775779 12776070 -109067786 - Lx8 LINE L1 -983 6490 6190 3 682 197 33 0 32 chr11 12776135 12776166 -109067690 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 3 682 724 272 84 3 chr11 12776182 12776507 -109067349 - Lx8 LINE L1 -467 5413 5016 3 682 1473 134 11 1 chr11 12777939 12778196 -109065660 - ORR1A2 LTR MaLR 0 346 80 3 682 302 274 16 12 chr11 12778367 12778455 -109065401 + PB1D9 SINE Alu 29 117 -32 3 682 27784 121 17 15 chr11 12778462 12784810 -109059046 + L1_Mus1 LINE L1 201 6565 -2 3 682 224 254 67 53 chr11 12784829 12784904 -109058952 + B1_Mus2 SINE Alu 72 147 0 3 682 180 111 0 0 chr11 12785902 12785929 -109057927 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 682 411 275 17 23 chr11 12786038 12786156 -109057700 + B1F SINE Alu 2 115 -2 3 682 207 0 0 0 chr11 12786368 12786391 -109057465 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 682 270 0 0 0 chr11 12786600 12786630 -109057226 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 682 388 284 86 15 chr11 12787011 12787321 -109056535 - L1MB2 LINE L1 -7 6173 5832 3 682 582 292 102 15 chr11 12787348 12787612 -109056244 + MLT1A1 LTR MaLR 66 352 -56 3 682 1129 234 51 8 chr11 12787658 12787895 -109055961 + RMER19C LTR ERVK 111 357 -254 3 682 583 77 0 0 chr11 12788015 12788093 -109055763 - L1_Mus4 LINE L1 -423 6213 6136 3 682 207 0 0 0 chr11 12788181 12788204 -109055652 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 682 1309 201 63 47 chr11 12788205 12788855 -109055001 + L1_Mus4 LINE L1 6223 7447 -197 3 682 323 113 16 0 chr11 12788858 12788920 -109054936 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 682 21 0 0 0 chr11 12789014 12789035 -109054821 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 2420 80 20 0 chr11 12789039 12789388 -109054468 - Lx3_Mus LINE L1 -981 6028 5673 3 682 6204 102 9 7 chr11 12789390 12790340 -109053516 + Lx3_Mus LINE L1 6035 6986 -23 3 682 180 77 0 0 chr11 12790340 12790366 -109053490 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 3 682 1174 310 56 48 chr11 12790588 12790836 -109053020 - L1M3 LINE L1 -1902 4238 3986 3 682 879 80 0 0 chr11 12790836 12790961 -109052895 + L1_Mus2 LINE L1 6442 6566 0 3 682 1174 310 56 48 chr11 12790961 12791003 -109052853 - L1M3 LINE L1 -2155 3985 3959 3 682 1232 88 16 27 chr11 12791003 12791189 -109052667 - B2_Mm2 SINE B2 -9 186 3 3 682 1174 310 56 48 chr11 12791189 12791768 -109052088 - L1M3 LINE L1 -2182 3958 3361 3 682 424 267 73 27 chr11 12791942 12792092 -109051764 - HAL1-3A_ME LINE L1 -726 2132 1976 3 682 417 95 0 0 chr11 12792093 12792156 -109051700 + (TATG)n Simple_repeat Simple_repeat 4 66 0 3 682 401 329 137 8 chr11 12792171 12792419 -109051437 - B4A SINE B4 -8 284 5 3 682 456 269 121 36 chr11 12792424 12792648 -109051208 - L1M3 LINE L1 -2877 3269 3027 3 682 973 194 44 0 chr11 12792648 12792875 -109050981 - Lx2 LINE L1 0 6997 6761 3 682 5869 55 1 9 chr11 12792879 12793629 -109050227 - L1Md_F2 LINE L1 0 6582 5839 3 682 250 292 42 100 chr11 12793661 12793758 -109050098 - Lx9 LINE L1 -48 7596 7517 3 682 471 18 0 0 chr11 12793758 12793814 -109050042 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 682 250 292 42 100 chr11 12793814 12793975 -109049881 - Lx9 LINE L1 -128 7516 7353 3 682 237 108 0 0 chr11 12794026 12794063 -109049793 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 682 2082 292 23 9 chr11 12794210 12794897 -109048959 - Lx9 LINE L1 -451 7193 6497 3 682 443 267 122 9 chr11 12794945 12795290 -109048566 - L1M3 LINE L1 -3094 3052 2666 3 682 2199 314 80 45 chr11 12795934 12797466 -109046390 - Lx8 LINE L1 -325 7148 5595 3 682 37561 30 0 1 chr11 12797468 12802962 -109040894 - L1Md_T LINE L1 0 6582 1105 3 682 8014 33 0 0 chr11 12802953 12804126 -109039730 - L1Md_T LINE L1 -1 6581 5409 3 682 12561 29 0 0 chr11 12804119 12805679 -109038177 + L1Md_T LINE L1 3857 5416 -467 3 682 5033 74 10 3 chr11 12805665 12806393 -109037463 - L1Md_T LINE L1 -5576 1148 416 3 682 407 287 74 11 chr11 12806395 12806571 -109037285 - Lx8 LINE L1 -310 5570 5384 3 682 279 0 0 0 chr11 12806632 12806663 -109037193 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 3 682 1197 210 22 22 chr11 12806665 12806938 -109036918 - Lx5 LINE L1 -20 7030 6758 3 682 729 212 139 5 chr11 12806936 12807130 -109036726 + Lx5 LINE L1 6549 6768 -282 3 682 651 303 89 68 chr11 12807153 12807603 -109036253 - L1M2 LINE L1 -840 5303 4836 3 682 2946 71 8 8 chr11 12807603 12807999 -109035857 - MTA_Mm LTR MaLR 0 396 1 3 682 651 298 76 58 chr11 12807999 12808638 -109035218 - L1M2 LINE L1 -1308 4835 4160 3 682 384 208 76 87 chr11 12809694 12809849 -109034007 - MLT1H2 LTR MaLR 0 549 373 3 682 4564 135 3 3 chr11 12810309 12810993 -109032863 + Lx2A1 LINE L1 6314 6997 -11 3 682 675 0 0 0 chr11 12810995 12811070 -109032786 + (GAA)n Simple_repeat Simple_repeat 2 76 0 3 682 476 349 13 7 chr11 12812488 12812641 -109031215 - B4 SINE B4 -44 248 95 3 682 941 283 82 85 chr11 12812748 12813053 -109030803 + MTD LTR MaLR 14 317 -83 3 682 2584 139 27 7 chr11 12813124 12813573 -109030283 - ETnERV-int LTR ERVK -815 2499 2042 3 682 442 122 10 82 chr11 12813603 12813701 -109030155 - RLTRETN_Mm LTR ERVK -231 91 1 3 682 265 411 11 56 chr11 12814417 12814595 -109029261 + LTR86B2 LTR ERVL 25 194 -293 3 682 3489 167 165 12 chr11 12817798 12818574 -109025282 - RMER17A2 LTR ERVK -11 895 1 3 682 377 294 49 9 chr11 12818884 12819107 -109024749 + L1MA4 LINE L1 5543 5774 -517 3 682 433 330 117 28 chr11 12819121 12819548 -109024308 + L1MA4 LINE L1 5830 6294 -6 3 682 736 122 0 22 chr11 12819989 12820123 -109023733 + (GAA)n Simple_repeat Simple_repeat 1 131 0 3 682 1259 155 5 5 chr11 12820123 12820324 -109023532 - RLTR10E LTR ERVK -1 310 110 3 682 3043 117 31 31 chr11 12820324 12820935 -109022921 - IAPEY3-int LTR ERVK -74 7606 6965 3 682 1452 93 102 0 chr11 12820935 12821161 -109022695 - IAP-d-int LTR ERVK -1287 5255 5007 3 682 336 158 0 0 chr11 12821161 12821218 -109022638 - IAP-d-int LTR ERVK -6039 503 447 3 682 393 297 35 35 chr11 12821237 12821515 -109022341 - IAPEY3-int LTR ERVK -5530 1012 822 3 682 3318 53 19 5 chr11 12821660 12822107 -109021749 - RLTR10-int LTR ERVK -995 992 553 3 682 650 70 22 44 chr11 12822107 12822242 -109021614 + (TTTCC)n Simple_repeat Simple_repeat 3 134 0 3 682 1300 67 0 6 chr11 12822340 12822519 -109021337 - RLTR10-int LTR ERVK -7403 178 1 3 682 1921 148 3 6 chr11 12822522 12822834 -109021022 - RLTR10E LTR ERVK 0 311 1 3 682 301 281 0 15 chr11 12825928 12825993 -109017863 + B4A SINE B4 1 64 -228 3 682 264 231 190 13 chr11 12825987 12826066 -109017790 + B4A SINE B4 194 286 -6 3 682 256 304 32 8 chr11 12826182 12826308 -109017548 - L1MB8 LINE L1 -2 6176 6048 3 682 3230 44 5 31 chr11 12826678 12827100 -109016756 - IAPLTR2a LTR ERVK 0 411 1 3 682 441 0 0 0 chr11 12827307 12827356 -109016500 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 682 405 0 0 0 chr11 12827899 12827944 -109015912 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 682 4747 141 4 11 chr11 12828470 12829230 -109014626 + Lx LINE L1 5900 6654 0 4 682 317 80 29 0 chr11 12829445 12829499 -109014357 + RLTR20A2 LTR ERVK 2 62 -489 4 682 3044 169 37 9 chr11 12829554 12829994 -109013862 + RLTR20A1 LTR ERVK 1 444 -107 4 682 378 0 0 0 chr11 12829994 12830036 -109013820 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 682 3044 169 37 9 chr11 12830036 12830131 -109013725 + RLTR20A1 LTR ERVK 445 551 0 4 682 753 201 0 0 chr11 12831445 12831595 -109012261 + CT-rich Low_complexity Low_complexity 17 166 0 4 682 1060 89 5 27 chr11 12831595 12831779 -109012077 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 682 753 201 0 0 chr11 12831779 12831792 -109012064 + polypyrimidine Low_complexity Low_complexity 4 16 0 4 682 297 283 28 9 chr11 12832640 12832747 -109011109 + L1MB1 LINE L1 5800 5908 -281 4 682 216 0 0 0 chr11 12832829 12832853 -109011003 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 682 235 301 165 30 chr11 12832998 12833176 -109010680 + MTEb LTR MaLR 166 365 -14 4 682 244 246 0 0 chr11 12833991 12834048 -109009808 + T-rich Low_complexity Low_complexity 1 57 0 4 682 1030 88 7 0 chr11 12838170 12838317 -109005539 - B2_Mm1t SINE B2 -6 187 40 4 682 517 269 47 97 chr11 12838725 12839129 -109004727 - L1MA6 LINE L1 -6 6294 5911 4 682 182 412 8 16 chr11 12839417 12839538 -109004318 + L2 LINE L2 1675 1794 -1625 4 682 270 338 42 42 chr11 12839661 12839874 -109003982 + L2 LINE L2 2025 2237 -1182 4 682 6987 88 20 8 chr11 12840194 12841157 -109002699 - L1_Mus3 LINE L1 -8 6630 5654 4 682 3471 38 30 7 chr11 12841157 12841583 -109002273 + RLTR10C LTR ERVK 1 436 0 4 682 6987 123 14 13 chr11 12841583 12841793 -109002063 - L1_Mus3 LINE L1 -230 5653 5439 4 682 10333 137 26 35 chr11 12841788 12842084 -109001772 + L1_Mm LINE L1 3208 3491 -2392 4 682 282 29 0 0 chr11 12842084 12842119 -109001737 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 682 10333 137 26 35 chr11 12842119 12843786 -109000070 + L1_Mm LINE L1 3492 5153 -730 4 683 291 54 0 0 chr11 12845272 12845309 -108998547 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 683 1861 191 87 15 chr11 12845773 12846166 -108997690 + MTC LTR MaLR 1 421 0 4 683 23 54 0 0 chr11 12848347 12848384 -108995472 + AT_rich Low_complexity Low_complexity 1 37 0 4 683 1010 261 11 0 chr11 12849127 12849388 -108994468 - Lx9 LINE L1 -169 7475 7212 4 683 405 0 0 0 chr11 12849388 12849433 -108994423 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 683 377 187 47 0 chr11 12849447 12849554 -108994302 + Lx9 LINE L1 7523 7634 -10 4 683 928 215 29 5 chr11 12850440 12850650 -108993206 - Lx9 LINE L1 -239 7405 7191 4 683 472 216 141 20 chr11 12850632 12850830 -108993026 + Lx9 LINE L1 7423 7644 0 4 683 921 127 63 0 chr11 12851713 12851871 -108991985 - Lx2 LINE L1 -1 6996 6829 4 683 324 331 0 0 chr11 12852661 12852800 -108991056 + (TG)n Simple_repeat Simple_repeat 2 140 0 4 683 596 14 14 0 chr11 12852872 12852945 -108990911 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 683 462 356 51 43 chr11 12853298 12853668 -108990188 - L1M5 LINE L1 -458 5666 5294 4 683 245 225 83 48 chr11 12853931 12854015 -108989841 + Lx8 LINE L1 6934 7020 -453 4 683 3016 11 49 0 chr11 12854025 12854375 -108989481 - IAPLTR1_Mm LTR ERVK 0 367 1 4 683 27334 25 1 1 chr11 12854375 12857646 -108986210 - IAPEz-int LTR ERVK 0 6481 3210 4 683 7053 99 93 20 chr11 12857645 12858862 -108984994 - IAPEz-int LTR ERVK -5168 1313 8 4 683 3016 11 49 0 chr11 12858862 12859212 -108984644 - IAPLTR1_Mm LTR ERVK 0 367 1 4 683 342 357 42 0 chr11 12859343 12859486 -108984370 + Lx8 LINE L1 7190 7338 -135 4 683 2467 23 0 7 chr11 12859478 12859781 -108984075 + L1Md_A LINE L1 5286 5586 -297 4 683 8412 34 0 0 chr11 12859781 12860776 -108983080 + L1Md_A LINE L1 5587 6581 -1 4 683 612 292 92 20 chr11 12860913 12861109 -108982747 + B3 SINE B2 2 211 -5 4 683 255 161 0 61 chr11 12861149 12861215 -108982641 - Lx9 LINE L1 -1 7643 7582 4 683 2826 77 8 0 chr11 12861308 12861685 -108982171 + L1_Mus1 LINE L1 6186 6565 -2 4 683 491 326 57 49 chr11 12861716 12862057 -108981799 + RMER20A LTR ERVK 35 379 -137 4 683 2439 56 3 0 chr11 12862092 12862412 -108981444 + L1Md_F2 LINE L1 5266 5586 -297 4 683 7877 55 3 9 chr11 12862413 12863412 -108980444 + L1Md_F2 LINE L1 5588 6580 -2 4 683 250 323 69 114 chr11 12863422 12863597 -108980259 + RMER20A LTR ERVK 445 611 -16 4 683 32393 73 3 1 chr11 12863836 12870011 -108973845 - L1Md_F2 LINE L1 0 6582 398 4 683 281 100 20 0 chr11 12870217 12870267 -108973589 + (TTA)n Simple_repeat Simple_repeat 2 52 0 4 683 435 38 0 0 chr11 12871167 12871220 -108972636 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 683 6906 153 16 23 chr11 12871712 12872697 -108971159 - L1_Mm LINE L1 -153 5730 4731 4 683 299 44 22 0 chr11 12872697 12872742 -108971114 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 4 683 6906 153 16 23 chr11 12872742 12873056 -108970800 - L1_Mm LINE L1 -1153 4730 4441 4 683 5731 133 16 1 chr11 12873054 12873984 -108969872 + Lx LINE L1 5711 6654 0 4 683 29311 89 42 17 chr11 12874324 12875929 -108967927 - L1Md_F2 LINE L1 -12 6570 4939 4 683 2870 70 3 3 chr11 12875929 12876317 -108967539 + L1Md_F2 LINE L1 6195 6582 0 4 683 29311 90 42 16 chr11 12876317 12880710 -108963146 - L1Md_F2 LINE L1 -945 4938 403 4 683 1550 188 51 65 chr11 12880710 12880840 -108963016 - ORR1C1 LTR MaLR -45 333 203 4 683 1314 79 10 21 chr11 12880840 12881034 -108962822 - L1_Mus2 LINE L1 0 6566 6375 4 683 1550 188 51 65 chr11 12881034 12881239 -108962617 - ORR1C1 LTR MaLR -176 202 3 4 683 400 33 32 16 chr11 12881258 12881320 -108962536 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 4 683 21 36 0 0 chr11 12881359 12881387 -108962469 + AT_rich Low_complexity Low_complexity 1 28 0 4 683 618 303 67 19 chr11 12881520 12881893 -108961963 - L1MDa LINE L1 -4335 2298 1908 4 683 438 322 60 130 chr11 12882191 12882391 -108961465 - B3 SINE B2 -27 189 4 4 683 446 49 16 0 chr11 12882435 12882496 -108961360 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 683 610 342 48 49 chr11 12882520 12882799 -108961057 - B4A SINE B4 0 292 2 4 683 1082 112 0 0 chr11 12882869 12883012 -108960844 - B1_Mus1 SINE Alu -5 143 1 4 683 364 359 132 8 chr11 12883016 12883274 -108960582 - L1MDa LINE L1 -5469 1164 875 4 683 1037 88 0 75 chr11 12883678 12883837 -108960019 + B1_Mus1 SINE Alu 2 148 0 4 683 504 86 0 0 chr11 12883837 12883907 -108959949 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 4 683 331 291 101 69 chr11 12884339 12884527 -108959329 + L1MC5 LINE L1 7246 7439 -522 4 683 209 239 0 21 chr11 12884726 12884773 -108959083 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4 683 1618 251 63 9 chr11 12884907 12885305 -108958551 - MTD LTR MaLR -14 405 1 4 683 1232 278 41 103 chr11 12885333 12885918 -108957938 - MTC-int LTR MaLR -79 1179 631 4 683 748 291 24 5 chr11 12886552 12886759 -108957097 - B3 SINE B2 -5 211 1 4 683 225 128 0 0 chr11 12887033 12887080 -108956776 + (A)n Simple_repeat Simple_repeat 1 47 0 4 683 851 258 100 12 chr11 12887890 12888141 -108955715 - MER2 DNA MER2_type -48 297 25 4 683 21 36 0 0 chr11 12888566 12888594 -108955262 + AT_rich Low_complexity Low_complexity 1 28 0 4 683 190 317 146 19 chr11 12888611 12888714 -108955142 - MIR SINE MIR -27 235 120 4 683 201 333 33 44 chr11 12889023 12889114 -108954742 - MIR SINE MIR -60 202 113 4 683 26 50 0 0 chr11 12889166 12889206 -108954650 + AT_rich Low_complexity Low_complexity 1 40 0 4 683 186 43 0 0 chr11 12891939 12891962 -108951894 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4 683 495 262 10 0 chr11 12891964 12892067 -108951789 - B1F2 SINE Alu -40 109 6 4 683 334 365 31 21 chr11 12892073 12892266 -108951590 + L1_Rod LINE L1 2866 3060 -3083 4 683 2320 200 5 7 chr11 12892271 12892689 -108951167 - MTC LTR MaLR -4 417 1 4 683 881 313 164 29 chr11 12892710 12893818 -108950038 + L1_Rod LINE L1 3048 4315 -1828 4 683 2340 39 0 0 chr11 12893838 12894117 -108949739 - L1_Mus2 LINE L1 -202 6364 6086 4 683 11401 98 13 9 chr11 12894114 12895995 -108947861 + L1_Mus2 LINE L1 4195 6075 -491 4 683 39 22 0 0 chr11 12896789 12896835 -108947021 + AT_rich Low_complexity Low_complexity 1 46 0 4 683 24 0 0 0 chr11 12897372 12897396 -108946460 + AT_rich Low_complexity Low_complexity 1 24 0 4 683 2762 200 59 7 chr11 12899062 12899622 -108944234 + RMER13B LTR ERVK 318 906 -2 4 683 1027 226 9 5 chr11 12899634 12899856 -108944000 - Lx9 LINE L1 -546 7098 6876 4 683 1364 232 50 25 chr11 12900400 12900718 -108943138 + ORR1B2 LTR MaLR 1 326 -41 4 683 1878 196 56 78 chr11 12900718 12901811 -108942045 + RMER17A2 LTR ERVK 1 905 -1 4 683 320 93 0 0 chr11 12901811 12901851 -108942005 + ORR1B2 LTR MaLR 321 360 -7 4 683 186 369 62 34 chr11 12903034 12903180 -108940676 + L2 LINE L2 1457 1606 -1813 4 683 4277 205 55 10 chr11 12903726 12904750 -108939106 - Lx4B LINE L1 -3 7055 5868 4 683 275 0 29 0 chr11 12905038 12905073 -108938783 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 683 567 40 0 0 chr11 12905073 12905146 -108938710 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 683 2423 121 51 13 chr11 12905146 12905540 -108938316 - RLTR9E LTR ERVK 0 409 1 4 683 513 92 0 26 chr11 12905540 12905618 -108938238 - ETnERV2-int LTR ERVK 0 7406 7331 4 683 2230 171 122 4 chr11 12905618 12906100 -108937756 - RLTR13D6 LTR ERVK -363 539 1 4 683 1535 134 20 8 chr11 12906111 12906360 -108937496 - ETnERV3-int LTR ERVK -28 5780 5529 4 683 360 92 0 84 chr11 12906373 12906444 -108937412 - RLTR45-int LTR ERVK -1172 6072 6008 4 683 1826 126 11 147 chr11 12906537 12906918 -108936938 - ETnERV2-int LTR ERVK -977 6429 6101 4 683 1877 224 80 27 chr11 12906931 12907445 -108936411 - RMER16-int LTR ERVK -1233 4173 3633 4 683 2971 103 22 7 chr11 12907448 12907898 -108935958 - ETnERV2-int LTR ERVK -3509 3897 3441 4 683 4759 181 82 36 chr11 12908132 12909649 -108934207 - ETnERV2-int LTR ERVK -3959 3447 929 4 683 578 287 64 5 chr11 12909629 12909832 -108934024 - ETnERV-int LTR ERVK -2907 407 193 4 683 1181 98 24 134 chr11 12909841 12910088 -108933768 + RLTR9C LTR ERVK 174 393 0 4 683 235 65 21 21 chr11 12910109 12910156 -108933700 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 4 683 478 297 254 40 chr11 12910240 12910492 -108933364 + ORR1E LTR MaLR 2 307 -72 4 683 306 0 0 0 chr11 12910691 12910725 -108933131 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 683 514 353 66 52 chr11 12910739 12911026 -108932830 - B4A SINE B4 0 292 2 4 683 29 70 0 0 chr11 12911585 12911642 -108932214 + AT_rich Low_complexity Low_complexity 1 57 0 4 683 22 35 0 0 chr11 12912018 12912047 -108931809 + AT_rich Low_complexity Low_complexity 1 29 0 4 683 14759 108 7 19 chr11 12912047 12915231 -108928625 - L1Md_F LINE L1 -2531 3352 209 4 683 2554 276 76 48 chr11 12915277 12916618 -108927238 - L1_Rod LINE L1 -395 5452 4074 4 683 937 267 94 29 chr11 12916825 12917280 -108926576 - L1_Mur3 LINE L1 -1117 4763 4279 4 683 352 104 0 0 chr11 12917295 12917343 -108926513 - HAL1-3A_ME LINE L1 -835 2023 1976 4 683 345 159 0 0 chr11 12917343 12917406 -108926450 + (TATG)n Simple_repeat Simple_repeat 3 65 0 4 683 2204 190 68 18 chr11 12917440 12917944 -108925912 + L1_Mur2 LINE L1 4290 4818 -1059 5 683 7425 186 47 19 chr11 12917947 12919861 -108923995 - L1_Mur3 LINE L1 -2825 3055 1087 4 683 332 54 18 0 chr11 12919873 12919929 -108923927 - L1Md_F2 LINE L1 -3 6579 6523 5 683 1209 317 35 72 chr11 12920020 12920118 -108923738 + Lx8 LINE L1 6753 6844 -629 5 683 2565 32 9 16 chr11 12920118 12920436 -108923420 - L1Md_F2 LINE L1 -12 6570 6255 5 683 1209 317 35 72 chr11 12920436 12920938 -108922918 + Lx8 LINE L1 6845 7331 -142 5 683 255 103 0 0 chr11 12920938 12920977 -108922879 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5 683 565 312 31 12 chr11 12922203 12922365 -108921491 - RSINE1 SINE B4 0 165 1 5 683 256 271 79 123 chr11 12923722 12923832 -108920024 + MER33 DNA MER1_type 31 134 -190 5 683 495 0 0 0 chr11 12923832 12923887 -108919969 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 5 683 1078 87 0 0 chr11 12923893 12924031 -108919825 - B1_Mus1 SINE Alu -9 139 2 5 683 256 271 79 123 chr11 12924031 12924165 -108919691 + MER33 DNA MER1_type 138 271 -53 5 683 21833 166 65 12 chr11 12925884 12931791 -108912065 - L1_Mus3 LINE L1 -1 6637 404 5 683 225 313 120 38 chr11 12932974 12933107 -108910749 + MLT1H LTR MaLR 123 266 -283 5 683 21 36 0 0 chr11 12933234 12933262 -108910594 + AT_rich Low_complexity Low_complexity 1 28 0 5 683 288 0 0 0 chr11 12933410 12933442 -108910414 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 683 633 132 0 0 chr11 12933442 12933563 -108910293 + (GA)n Simple_repeat Simple_repeat 2 122 0 5 683 938 310 34 72 chr11 12933563 12933883 -108909973 + MTD LTR MaLR 75 382 -37 5 683 469 312 51 31 chr11 12934255 12934450 -108909406 - RMER15 LTR ERVL 0 575 377 5 683 348 24 0 0 chr11 12934566 12934607 -108909249 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 683 340 275 12 12 chr11 12934864 12934945 -108908911 + B4A SINE B4 1 81 -211 5 683 1205 309 68 13 chr11 12934946 12935473 -108908383 + Lx8 LINE L1 6925 7467 -6 5 683 509 354 19 43 chr11 12935504 12935711 -108908145 + B4A SINE B4 91 292 0 5 683 550 182 6 6 chr11 12935740 12935900 -108907956 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 683 628 164 52 7 chr11 12936736 12936871 -108906985 + Lx4A LINE L1 6916 7056 -2 5 683 501 170 142 0 chr11 12940914 12941020 -108902836 - B1_Mus2 SINE Alu -17 130 10 5 683 6999 65 8 0 chr11 12941598 12942503 -108901353 - L1_Mus1 LINE L1 0 6567 5679 5 683 2292 65 0 13 chr11 12944485 12944796 -108899060 - L1Md_F2 LINE L1 -2 6580 6274 5 683 356 103 17 0 chr11 12945228 12945286 -108898570 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 683 322 188 48 64 chr11 12945560 12945685 -108898171 - Lx2B LINE L1 -5 6995 6873 5 683 6613 107 14 10 chr11 12945725 12946703 -108897153 + Lx3_Mus LINE L1 6020 7001 -8 5 683 884 171 72 12 chr11 12946710 12946876 -108896980 + ORR1B1 LTR MaLR 211 386 -8 5 683 5339 214 65 24 chr11 12946882 12948228 -108895628 + ORR1B1-int LTR MaLR 3 1404 -105 5 683 1444 214 25 7 chr11 12948227 12948509 -108895347 + ORR1B1 LTR MaLR 102 388 -6 5 683 342 0 0 0 chr11 12948893 12948931 -108894925 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 683 11883 124 19 3 chr11 12951349 12954039 -108889817 + L1_Mus3 LINE L1 3908 6638 0 5 683 714 370 106 18 chr11 12954957 12955629 -108888227 - Lx8 LINE L1 -181 7292 6562 5 683 477 251 152 8 chr11 12956010 12956247 -108887609 + Lx9 LINE L1 7359 7629 -15 5 683 879 193 117 15 chr11 12956928 12957133 -108886723 + URR1A DNA MER1_type 1 226 0 5 683 1898 32 11 46 chr11 12957155 12957415 -108886441 + L1Md_F3 LINE L1 6333 6583 -1 5 683 25 31 0 0 chr11 12957584 12957616 -108886240 + AT_rich Low_complexity Low_complexity 1 32 0 5 683 3214 46 8 0 chr11 12957697 12958090 -108885766 + MTA_Mm LTR MaLR 1 396 0 5 683 8509 53 12 2 chr11 12958090 12959177 -108884679 + MTA_Mm-int LTR MaLR 1 1098 0 5 683 3048 45 48 0 chr11 12959177 12959555 -108884301 + MTA_Mm LTR MaLR 1 396 0 5 683 5115 142 43 75 chr11 12960096 12960566 -108883290 + Lx2B LINE L1 4835 5309 -577 5 683 195 26 49 49 chr11 12960566 12960607 -108883249 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 683 5115 142 43 75 chr11 12960607 12960619 -108883237 + Lx2B LINE L1 5310 5310 -576 5 683 1083 89 7 0 chr11 12960619 12960765 -108883091 - B1_Mm SINE Alu 0 147 1 5 683 6127 180 42 50 chr11 12960765 12962431 -108881425 + Lx2B LINE L1 5310 6991 -9 5 683 29 28 0 0 chr11 12962620 12962656 -108881200 + AT_rich Low_complexity Low_complexity 1 36 0 5 683 5210 154 25 0 chr11 12962943 12963865 -108879991 - L1_Mur2 LINE L1 -1767 4110 3166 5 683 7193 152 43 21 chr11 12963860 12965445 -108878411 + Lx LINE L1 4425 6016 -638 5 683 2242 119 0 0 chr11 12965443 12965761 -108878095 - Lx2 LINE L1 -473 6524 6207 5 683 365 221 164 20 chr11 12965942 12966094 -108877762 - Lx9 LINE L1 -35 7609 7436 5 683 23 33 0 0 chr11 12966220 12966250 -108877606 + AT_rich Low_complexity Low_complexity 1 30 0 5 683 366 340 155 23 chr11 12966996 12967261 -108876595 + RMER15 LTR ERVL 275 574 -1 5 683 266 346 93 42 chr11 12967261 12967475 -108876381 + RMER15-int LTR ERVL 5 229 -4770 5 683 229 370 83 0 chr11 12967525 12967633 -108876223 + Charlie12 DNA MER1_type 1 117 -2756 5 683 420 362 18 59 chr11 12967673 12967843 -108876013 - RSINE1 SINE B4 0 165 3 5 683 501 351 82 52 chr11 12967950 12968317 -108875539 + RMER15-int LTR ERVL 4377 4754 -245 5 683 2058 320 57 26 chr11 12968333 12969286 -108874570 - Lx8 LINE L1 -303 7170 6189 5 683 316 248 83 0 chr11 12969735 12969868 -108873988 - L1MA4 LINE L1 -6 6285 6142 5 683 630 255 29 79 chr11 12970137 12970446 -108873410 - L1MA4 LINE L1 -385 5906 5601 5 683 957 218 112 35 chr11 12970454 12970873 -108872983 + L1MA4 LINE L1 5155 5602 -689 5 683 24 0 0 0 chr11 12970893 12970917 -108872939 + AT_rich Low_complexity Low_complexity 1 24 0 5 683 37 0 0 0 chr11 12971028 12971065 -108872791 + AT_rich Low_complexity Low_complexity 1 37 0 5 683 1338 124 76 12 chr11 12971079 12971451 -108872405 + Lx3_Mus LINE L1 5850 6302 -707 5 683 7021 49 12 1 chr11 12971475 12972361 -108871495 + L1Md_F2 LINE L1 5686 6581 -1 5 683 2890 109 25 0 chr11 12972367 12972815 -108871041 + Lx3_Mus LINE L1 6551 7009 0 5 683 888 75 34 17 chr11 12972850 12973026 -108870830 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 5 683 28 29 0 0 chr11 12973079 12973114 -108870742 + AT_rich Low_complexity Low_complexity 1 35 0 5 683 332 308 55 0 chr11 12973119 12973210 -108870646 + PB1D9 SINE Alu 1 96 -24 5 683 216 0 0 0 chr11 12973914 12973938 -108869918 + (CAT)n Simple_repeat Simple_repeat 1 24 0 5 683 243 0 0 0 chr11 12973938 12973965 -108869891 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 683 1054 310 119 40 chr11 12975290 12975828 -108868028 + Lx9 LINE L1 6856 7440 -204 5 683 1433 179 18 14 chr11 12975828 12976106 -108867750 + Lx2B LINE L1 6715 6993 -7 5 85 1054 310 119 40 chr11 12976106 12976162 -108867694 + Lx9 LINE L1 7441 7496 -148 5 684 323 228 0 12 chr11 12977623 12977703 -108866153 - MTEb LTR MaLR -4 375 297 5 684 362 268 117 8 chr11 12977699 12977827 -108866029 - MTEa-int LTR MaLR -1425 155 14 5 684 1108 321 47 19 chr11 12977841 12978200 -108865656 - MTEa LTR MaLR -2 377 9 5 684 396 0 0 0 chr11 12978216 12978260 -108865596 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 684 321 26 0 0 chr11 12979903 12979941 -108863915 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 684 681 353 81 52 chr11 12981602 12981987 -108861869 - MLT1A1 LTR MaLR -12 396 1 5 684 19158 156 154 9 chr11 12982649 12986158 -108857698 + L1_Mus3 LINE L1 437 4630 -1253 5 684 288 0 0 0 chr11 12986158 12986190 -108857666 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5 684 19158 132 92 10 chr11 12986190 12988165 -108855691 + L1_Mus3 LINE L1 4631 6627 -11 5 684 190 353 56 48 chr11 12988838 12988963 -108854893 + L4 LINE RTE 991 1116 -913 5 684 277 313 20 10 chr11 12989657 12989757 -108854099 + MLT1C LTR MaLR 337 437 -30 5 684 222 37 0 0 chr11 12991419 12991446 -108852410 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 684 802 182 52 9 chr11 12992405 12992584 -108851272 + Lx5 LINE L1 6191 6403 -655 5 684 5986 199 47 17 chr11 12993117 12994378 -108849478 + Lx5 LINE L1 5659 6903 -147 5 684 43 35 0 0 chr11 12994396 12994453 -108849403 + AT_rich Low_complexity Low_complexity 1 57 0 5 684 271 289 181 19 chr11 12994795 12994950 -108848906 - MTD LTR MaLR -4 375 196 5 684 292 348 42 14 chr11 12995079 12995222 -108848634 - MTD LTR MaLR -272 147 1 5 684 1887 163 0 55 chr11 12995314 12995659 -108848197 + ORR1A3 LTR MaLR 1 326 0 5 684 856 296 53 48 chr11 12995912 12996291 -108847565 + Lx9 LINE L1 6916 7296 -348 5 684 382 344 219 15 chr11 12996708 12996982 -108846874 - LTR16A LTR ERVL -113 338 9 5 684 310 239 35 0 chr11 12997570 12997683 -108846173 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 684 455 344 53 21 chr11 12997683 12997740 -108846116 + B3A SINE B2 3 69 -129 5 684 3213 113 11 4 chr11 12997740 12998212 -108845644 - MT2C_Mm LTR ERVL 0 475 1 5 684 455 306 86 62 chr11 12998212 12998363 -108845493 + B3A SINE B2 70 215 -1 5 684 22 35 0 0 chr11 12998570 12998599 -108845257 + AT_rich Low_complexity Low_complexity 1 29 0 5 684 315 105 0 0 chr11 12999139 12999196 -108844660 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 684 22 80 0 0 chr11 12999252 12999302 -108844554 + AT_rich Low_complexity Low_complexity 1 50 0 5 684 246 255 0 56 chr11 12999537 12999591 -108844265 + ORR1E LTR MaLR 1 51 -308 5 684 1215 307 18 53 chr11 13000634 13001033 -108842823 + MTD LTR MaLR 3 387 -32 1 684 216 0 0 0 chr11 13001034 13001058 -108842798 + (A)n Simple_repeat Simple_repeat 1 24 0 2 684 291 114 0 0 chr11 13002306 13002350 -108841506 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 684 375 41 0 0 chr11 13002350 13002398 -108841458 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 684 1968 98 0 0 chr11 13003202 13003478 -108840378 - L1_Mus1 LINE L1 -535 5348 5073 5 684 7508 74 5 3 chr11 13003477 13004694 -108839162 + L1_Mus1 LINE L1 5347 6566 -1 5 684 2990 186 30 2 chr11 13004727 13005288 -108838568 - Lx2B LINE L1 0 7000 6424 6 684 704 114 9 9 chr11 13005288 13005403 -108838453 + Lx2B LINE L1 5813 5927 -1073 7 684 220 27 0 51 chr11 13005515 13005554 -108838302 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 684 1140 48 0 33 chr11 13005556 13005707 -108838149 - B1_Mm SINE Alu 0 147 2 9 684 6759 204 82 44 chr11 13006616 13008306 -108835550 + MERVL_2A-int LTR ERVL 4002 5755 -6 1 684 1042 224 173 126 chr11 13008312 13008710 -108835146 + MT2A LTR ERVL 1 417 -116 1 684 272 91 23 0 chr11 13008710 13008754 -108835102 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 684 1635 151 4 18 chr11 13009946 13010223 -108833633 - Lx LINE L1 -11 6643 6371 1 684 492 121 7 57 chr11 13010493 13010633 -108833223 + GA-rich Low_complexity Low_complexity 6 138 0 1 684 356 292 9 9 chr11 13010798 13010912 -108832944 + Tigger5 DNA MER2_type 2291 2404 -2 1 684 262 210 48 0 chr11 13011893 13011955 -108831901 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1 684 234 0 0 0 chr11 13012179 13012205 -108831651 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 684 280 63 182 45 chr11 13013378 13013434 -108830422 + L1Md_F2 LINE L1 6494 6559 -23 1 684 224 59 29 0 chr11 13013434 13013468 -108830388 + (TAA)n Simple_repeat Simple_repeat 1 35 0 1 684 263 294 202 0 chr11 13014412 13014521 -108829335 - B3A SINE B2 -11 187 57 1 684 26 30 0 0 chr11 13016262 13016295 -108827561 + AT_rich Low_complexity Low_complexity 1 33 0 2 684 3239 141 78 4 chr11 13017749 13018310 -108825546 - Lx2 LINE L1 -1 6996 6394 2 684 27 29 0 0 chr11 13020248 13020282 -108823574 + AT_rich Low_complexity Low_complexity 1 34 0 2 684 951 111 15 0 chr11 13020818 13020953 -108822903 + Lx4A LINE L1 6212 6348 -710 2 684 1822 134 85 16 chr11 13020953 13021272 -108822584 - Lx LINE L1 -6 6648 6308 2 684 4163 160 29 3 chr11 13021266 13021961 -108821895 + Lx4A LINE L1 6344 7056 -2 2 684 504 209 59 44 chr11 13021968 13022018 -108821838 - B1_Mur1 SINE Alu -8 141 93 2 684 375 23 0 0 chr11 13022018 13022062 -108821794 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 684 504 209 59 44 chr11 13022062 13022146 -108821710 - B1_Mur1 SINE Alu -57 92 5 2 684 672 67 0 0 chr11 13023104 13023194 -108820662 + (TGG)n Simple_repeat Simple_repeat 2 91 0 2 684 230 348 21 21 chr11 13023448 13023542 -108820314 - MLT1B LTR MaLR -16 374 281 2 684 236 306 42 0 chr11 13024604 13024676 -108819180 + MER44B DNA MER2_type 1 75 -475 2 684 801 248 121 38 chr11 13024676 13024965 -108818891 + MER44B DNA MER2_type 203 515 -35 2 684 402 358 75 29 chr11 13025508 13025836 -108818020 + MLT1E1A LTR MaLR 281 671 -9 3 684 336 298 158 34 chr11 13026364 13026541 -108817315 - MLT1E1A LTR MaLR -50 630 432 3 684 5252 96 12 36 chr11 13028487 13029339 -108814517 - L1_Mus3 LINE L1 0 6638 5838 3 684 252 314 35 11 chr11 13029425 13029512 -108814344 + RSINE1 SINE B4 56 144 -21 3 684 1818 289 37 27 chr11 13031061 13031660 -108812196 - Lx6 LINE L1 -40 7420 6497 3 684 1365 122 0 9 chr11 13031891 13032106 -108811750 - L1Md_F2 LINE L1 -15 6567 6355 3 684 301 278 244 30 chr11 13034461 13034691 -108809165 - MLT1A0 LTR MaLR -76 289 11 3 684 7524 147 17 7 chr11 13034982 13036247 -108807609 - Lx LINE L1 -57 5826 4549 3 684 4868 132 20 18 chr11 13036247 13037062 -108806794 + Lx LINE L1 5838 6653 -1 3 684 22 80 0 0 chr11 13037072 13037122 -108806734 + AT_rich Low_complexity Low_complexity 1 50 0 3 684 231 308 96 44 chr11 13037391 13037527 -108806329 - ORR1E LTR MaLR -211 148 6 3 684 216 283 0 0 chr11 13037800 13037853 -108806003 + L4 LINE RTE 1546 1598 -431 4 684 26 0 0 0 chr11 13038871 13038897 -108804959 + AT_rich Low_complexity Low_complexity 1 26 0 4 684 478 321 7 54 chr11 13039643 13039791 -108804065 + RSINE1 SINE B4 25 165 0 4 684 342 0 0 0 chr11 13039851 13039889 -108803967 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 684 193 315 96 35 chr11 13040086 13040201 -108803655 - L2 LINE L2 -1096 2323 2202 4 684 399 301 39 0 chr11 13040300 13040403 -108803453 - PB1D10 SINE Alu -5 112 6 4 684 3163 89 4 54 chr11 13040812 13041311 -108802545 + IAPLTR2_Mm LTR ERVK 1 474 -1 4 684 300 277 0 24 chr11 13042454 13042539 -108801317 - B4 SINE B4 -208 84 2 4 684 26069 138 13 16 chr11 13042620 13047686 -108796170 + L1VL4 LINE L1 394 5504 -379 4 684 3678 97 21 11 chr11 13047686 13048218 -108795638 + L1_Mus2 LINE L1 6027 6563 -3 4 684 569 350 80 47 chr11 13048387 13048900 -108794956 - MT2A LTR ERVL -3 530 1 5 684 242 162 14 42 chr11 13049111 13049182 -108794674 + A-rich Low_complexity Low_complexity 3 71 0 5 684 490 303 92 28 chr11 13049359 13049610 -108794246 + MER90a LTR ERV1 333 599 -15 5 684 750 23 0 0 chr11 13051182 13051270 -108792586 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 684 227 303 20 96 chr11 13051945 13052077 -108791779 + MIRc SINE MIR 33 161 -107 5 684 199 258 136 0 chr11 13052190 13052256 -108791600 - MIRb SINE MIR -76 192 114 5 684 200 94 0 30 chr11 13052298 13052331 -108791525 + (TATG)n Simple_repeat Simple_repeat 4 35 0 5 684 180 196 0 42 chr11 13052339 13052387 -108791469 + L4 LINE RTE 1980 2025 -4 5 684 2518 241 23 21 chr11 13052428 13052987 -108790869 - RLTR20B1 LTR ERVK 0 563 4 5 684 479 184 191 0 chr11 13052999 13053135 -108790721 + Lx9 LINE L1 7282 7443 -201 5 684 209 95 23 45 chr11 13053965 13054009 -108789847 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 684 1213 41 0 7 chr11 13054010 13054158 -108789698 - B1_Mm SINE Alu 0 147 1 6 684 30 45 0 0 chr11 13054165 13054209 -108789647 + AT_rich Low_complexity Low_complexity 1 44 0 6 684 6479 204 21 128 chr11 13054395 13056276 -108787580 + Lx5 LINE L1 4070 5738 -139 6 684 210 37 0 0 chr11 13056276 13056303 -108787553 + (CAA)n Simple_repeat Simple_repeat 2 28 0 6 684 6479 204 23 127 chr11 13056303 13056434 -108787422 + Lx5 LINE L1 5739 5892 -1158 6 684 459 0 0 0 chr11 13056434 13056485 -108787371 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 684 3338 209 80 86 chr11 13056485 13057000 -108786856 + Lx5 LINE L1 5893 6426 -624 6 684 693 36 0 0 chr11 13057000 13057084 -108786772 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 684 3338 209 80 86 chr11 13057084 13057223 -108786633 + Lx5 LINE L1 6427 6569 -481 6 684 16059 191 75 37 chr11 13057215 13058940 -108784916 + Lx4B LINE L1 1040 3336 -2550 6 684 315 0 0 0 chr11 13058940 13058975 -108784881 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 684 16059 196 26 35 chr11 13058975 13062438 -108781418 + Lx4B LINE L1 3328 6747 -311 6 684 330 294 43 14 chr11 13062440 13062578 -108781278 + Lx4B LINE L1 6857 6998 -2 6 684 2652 23 191 0 chr11 13063111 13063456 -108780400 + IAPLTR2a LTR ERVK 1 411 0 6 684 3002 29 45 8 chr11 13063935 13064315 -108779541 + MTA_Mm LTR MaLR 2 395 -1 7 684 648 157 0 40 chr11 13066381 13066507 -108777349 - Lx4A LINE L1 -358 6700 6580 7 684 5557 164 54 11 chr11 13066490 13067471 -108776385 + Lx4A LINE L1 5587 6609 -449 7 684 307 253 0 13 chr11 13068165 13068241 -108775615 + L1MA5 LINE L1 5859 5933 -367 7 684 1138 62 0 0 chr11 13068884 13069030 -108774826 + B1_Mus2 SINE Alu 2 147 0 7 684 231 36 0 0 chr11 13069030 13069058 -108774798 + (A)n Simple_repeat Simple_repeat 1 28 0 7 684 398 284 123 25 chr11 13069110 13069367 -108774489 + L1MA4 LINE L1 5588 5904 -396 7 684 453 312 34 61 chr11 13071099 13071246 -108772610 - RSINE1 SINE B4 0 165 23 7 684 760 61 0 0 chr11 13071419 13071517 -108772339 + B1_Mm SINE Alu 7 104 -43 7 684 410 244 11 32 chr11 13071561 13071654 -108772202 + B1F SINE Alu 1 91 -58 7 684 387 0 0 0 chr11 13071706 13071749 -108772107 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 684 748 288 89 67 chr11 13071946 13072813 -108771043 - L1MA7 LINE L1 -292 5999 5090 8 684 22 80 0 0 chr11 13072818 13072868 -108770988 + AT_rich Low_complexity Low_complexity 1 50 0 8 684 1357 277 43 11 chr11 13072939 13073286 -108770570 - MTE2b LTR MaLR 0 379 22 8 684 623 301 72 36 chr11 13073731 13074007 -108769849 + RMER15 LTR ERVL 277 562 -13 8 684 1031 257 141 7 chr11 13074605 13074911 -108768945 + MTD LTR MaLR 59 405 -14 8 684 487 311 28 28 chr11 13075115 13075297 -108768559 - MER2 DNA MER2_type -6 339 158 8 684 316 178 0 52 chr11 13075312 13075389 -108768467 - Lx6 LINE L1 -5 7455 7383 8 684 1321 231 112 3 chr11 13075415 13075745 -108768111 - ORR1B2 LTR MaLR 0 367 2 8 684 4881 226 101 15 chr11 13075746 13077136 -108766720 - ORR1B2-int LTR MaLR 0 1509 1 8 684 1629 205 68 3 chr11 13077140 13077477 -108766379 - ORR1B2 LTR MaLR -8 359 1 8 684 1543 262 16 8 chr11 13077477 13077842 -108766014 - Lx6 LINE L1 -104 7356 6989 8 684 6904 113 20 9 chr11 13079881 13080830 -108763026 - L1_Mus3 LINE L1 0 6638 5675 8 684 3419 28 2 0 chr11 13080830 13081225 -108762631 + MTA_Mm LTR MaLR 1 396 0 8 684 6904 164 8 19 chr11 13081225 13081808 -108762048 - L1_Mus3 LINE L1 -209 5674 5104 8 684 5633 62 6 1 chr11 13081808 13082529 -108761327 - L1_Mus1 LINE L1 0 6567 5844 9 684 6904 164 8 19 chr11 13082529 13082981 -108760875 - L1_Mus3 LINE L1 -780 5103 4649 8 684 32490 81 1 18 chr11 13082977 13088149 -108755707 + L1Md_F2 LINE L1 507 5586 -297 9 684 8127 47 1 1 chr11 13088149 13089144 -108754712 + L1Md_F2 LINE L1 5587 6581 -1 9 684 16117 164 15 24 chr11 13089154 13092365 -108751491 - L1_Mus3 LINE L1 -1228 4655 1475 8 684 422 237 37 49 chr11 13092365 13092529 -108751327 - RLTR43A LTR ERVK -2 362 201 9 684 2329 199 23 5 chr11 13092689 13093118 -108750738 - ETnERV2-int LTR ERVK -324 7082 6646 9 684 469 318 47 26 chr11 13093124 13093360 -108750496 - MERVK26-int LTR ERVK -300 6619 6502 9 684 460 258 8 8 chr11 13093360 13093481 -108750375 - RodERV21-int LTR ERV1 -434 4557 4437 9 684 469 318 47 26 chr11 13093481 13093505 -108750351 - MERVK26-int LTR ERVK -300 6501 6489 9 684 1027 154 455 0 chr11 13093960 13094173 -108749683 - RMER16-int LTR ERVK -1436 3970 3661 9 684 1751 253 36 36 chr11 13094213 13094803 -108749053 - L1VL4 LINE L1 -5574 728 139 9 684 742 256 5 27 chr11 13094950 13095135 -108748721 - ORR1B1 LTR MaLR -14 380 200 9 684 297 0 0 0 chr11 13095135 13095168 -108748688 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 684 456 262 0 0 chr11 13095174 13095277 -108748579 - ORR1B1 LTR MaLR -264 103 1 9 684 267 31 0 0 chr11 13096496 13096528 -108747328 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 684 500 142 333 0 chr11 13096948 13097068 -108746788 - BGLII_B LTR ERVK -281 160 1 1 684 886 307 34 24 chr11 13097069 13097363 -108746493 + MTD LTR MaLR 123 419 0 1 684 249 33 0 0 chr11 13098877 13098907 -108744949 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 684 402 228 0 0 chr11 13099564 13099665 -108744191 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 684 216 0 0 0 chr11 13099734 13099758 -108744098 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 684 6188 208 45 43 chr11 13103753 13104779 -108739077 + L1_Mur2 LINE L1 1117 2063 -3817 1 684 282 56 0 0 chr11 13104779 13104815 -108739041 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 684 6188 202 56 25 chr11 13104815 13105914 -108737942 + L1_Mur2 LINE L1 2059 3175 -2702 1 684 6559 107 73 1 chr11 13105909 13107153 -108736703 - L1_Mus3 LINE L1 -4 6634 5288 1 85 528 300 0 0 chr11 13107172 13107302 -108736554 - ID_B1 SINE B4 -4 220 91 1 685 291 208 250 15 chr11 13107308 13107440 -108736416 - L1MA9 LINE L1 -204 6108 5946 1 685 560 210 13 71 chr11 13107426 13107465 -108736391 - Lx5 LINE L1 -1315 5735 5705 1 685 4807 98 1 9 chr11 13107465 13108161 -108735695 - L1Md_F2 LINE L1 -2 6580 5890 1 685 17740 98 10 9 chr11 13108161 13112474 -108731382 - L1Md_F LINE L1 -179 5704 204 1 685 14748 147 8 44 chr11 13112485 13115293 -108728563 - L1_Mm LINE L1 -587 5296 2657 1 685 2977 85 0 0 chr11 13115293 13115691 -108728165 - L1_Mus1 LINE L1 -1 6566 6169 1 685 6255 280 17 97 chr11 13115691 13116007 -108727849 - L1_Mm LINE L1 -3178 2669 2399 1 685 3458 23 2 0 chr11 13116007 13116402 -108727454 - MTA_Mm LTR MaLR 0 396 1 1 685 6255 280 17 97 chr11 13116402 13116677 -108727179 - L1_Mm LINE L1 -3449 2398 2128 1 685 3240 84 20 12 chr11 13116691 13117185 -108726671 + MusHAL1 LINE L1 2210 2707 -5 1 685 467 17 17 0 chr11 13117256 13117316 -108726540 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1 685 620 289 5 48 chr11 13117318 13117525 -108726331 - B3A SINE B2 0 198 1 1 685 266 290 118 27 chr11 13117858 13117968 -108725888 - B4A SINE B4 -56 236 117 1 685 2430 117 11 0 chr11 13118062 13118439 -108725417 + L1_Mus3 LINE L1 6252 6632 -6 1 685 29 0 0 0 chr11 13118442 13118471 -108725385 + AT_rich Low_complexity Low_complexity 1 29 0 1 685 2366 217 110 11 chr11 13118471 13119119 -108724737 - Lx9 LINE L1 -13 7631 6920 1 685 850 239 76 38 chr11 13119104 13119473 -108724383 + L1_Rod LINE L1 2888 3270 -2577 1 685 270 0 0 0 chr11 13120603 13120633 -108723223 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 685 980 228 26 0 chr11 13120845 13121038 -108722818 + B3 SINE B2 13 210 -6 1 685 497 318 98 35 chr11 13124876 13125163 -108718693 + RMER15-int LTR ERVL 2 306 -4693 1 685 1019 315 99 1 chr11 13125266 13125942 -108717914 + RMER15-int LTR ERVL 450 1191 -3808 1 685 522 0 0 0 chr11 13125943 13126001 -108717855 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 685 17075 98 33 11 chr11 13126668 13129923 -108713933 + MusHAL1 LINE L1 7 3350 -3 1 685 198 91 0 0 chr11 13129941 13129974 -108713882 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 685 568 261 142 4 chr11 13129983 13130256 -108713600 + L1MA6 LINE L1 5971 6282 -18 1 685 430 361 84 50 chr11 13130383 13130532 -108713324 + Lx8 LINE L1 6188 6332 -1141 1 685 180 0 0 0 chr11 13130532 13130552 -108713304 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 685 430 361 84 50 chr11 13130552 13130880 -108712976 + Lx8 LINE L1 6333 6681 -792 1 685 296 143 0 41 chr11 13130875 13130948 -108712908 - Lx6 LINE L1 -4 7456 7387 1 685 255 284 143 25 chr11 13130948 13131067 -108712789 + RMER15-int LTR ERVL 4598 4730 -269 1 685 1115 295 85 41 chr11 13131654 13132897 -108710959 + L1M2 LINE L1 1660 3015 -3534 1 685 1689 180 169 34 chr11 13132898 13133353 -108710503 + RLTR20B2 LTR ERVK 1 499 -64 1 685 641 278 66 36 chr11 13133385 13133546 -108710310 + L1M2 LINE L1 3021 3191 -3358 1 685 2534 203 54 72 chr11 13133546 13134173 -108709683 - RLTR18 LTR ERVK 0 616 1 1 685 641 285 70 39 chr11 13134173 13134461 -108709395 + L1M2 LINE L1 3177 3464 -3118 1 685 1084 325 53 12 chr11 13134476 13135196 -108708660 + L1M2 LINE L1 4532 5280 -863 1 685 4731 49 0 0 chr11 13135218 13135790 -108708066 - L1Md_F2 LINE L1 -386 6196 5625 1 685 1452 124 0 13 chr11 13135790 13136026 -108707830 + L1Md_F2 LINE L1 6350 6582 0 1 685 228 258 0 31 chr11 13136217 13136281 -108707575 + Lx9 LINE L1 7052 7113 -531 1 685 493 302 107 14 chr11 13136305 13136646 -108707210 + Lx7 LINE L1 5512 5914 -1782 1 685 498 308 28 44 chr11 13136780 13136960 -108706896 - MTC-int LTR MaLR -446 812 636 1 685 198 0 0 0 chr11 13136999 13137021 -108706835 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 685 251 348 7 22 chr11 13137098 13137236 -108706620 + GA-rich Low_complexity Low_complexity 4 139 0 1 685 22 99 0 0 chr11 13138792 13138863 -108704993 + AT_rich Low_complexity Low_complexity 1 71 0 1 685 500 259 164 44 chr11 13139045 13139271 -108704585 - Lx7 LINE L1 -388 7308 7056 1 685 744 230 53 0 chr11 13139313 13139465 -108704391 - RMER6D LTR ERVK -4 716 557 1 685 2333 191 73 102 chr11 13139463 13140004 -108703852 - RMER6C LTR ERVK -59 697 192 1 685 946 73 0 49 chr11 13140004 13140147 -108703709 - L1_Mus1 LINE L1 -1 6566 6431 1 685 2333 184 75 99 chr11 13140147 13140344 -108703512 - RMER6C LTR ERVK -496 194 1 1 685 426 230 11 0 chr11 13140353 13140440 -108703416 + Lx7 LINE L1 6826 6913 -783 1 685 278 311 123 0 chr11 13140739 13140845 -108703011 - RSINE1 SINE B4 0 165 47 1 685 842 225 181 39 chr11 13140885 13140990 -108702866 - ORR1C2 LTR MaLR -62 322 191 1 685 486 0 0 0 chr11 13140990 13141044 -108702812 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 685 842 225 181 39 chr11 13141044 13141220 -108702636 - ORR1C2 LTR MaLR -194 190 2 1 685 268 304 22 0 chr11 13141531 13141623 -108702233 + B3 SINE B2 2 95 -121 1 685 758 239 110 0 chr11 13141735 13141953 -108701903 - Lx8 LINE L1 -1510 5963 5722 1 685 2163 91 112 8 chr11 13141959 13142330 -108701526 + BGLII LTR ERVK 12 421 0 1 685 496 248 17 0 chr11 13142340 13142457 -108701399 - Lx7 LINE L1 -1989 5707 5589 1 685 1594 330 112 31 chr11 13142508 13142641 -108701215 + Lx8 LINE L1 6042 6190 -1506 1 685 423 0 0 0 chr11 13142641 13142688 -108701168 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 685 1594 318 146 33 chr11 13142688 13143396 -108700460 + Lx8 LINE L1 6186 6947 -526 1 685 606 39 0 0 chr11 13143396 13143473 -108700383 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 1 685 1594 318 146 33 chr11 13143473 13143890 -108699966 + Lx8 LINE L1 6948 7444 -29 1 685 1243 203 70 0 chr11 13143894 13144135 -108699721 - ORR1B2 LTR MaLR 0 367 110 1 685 770 111 0 8 chr11 13144138 13144256 -108699600 + B1_Mus1 SINE Alu 20 136 -12 1 685 279 0 0 0 chr11 13144257 13144288 -108699568 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 685 231 86 0 0 chr11 13144326 13144361 -108699495 + PB1D9 SINE Alu 5 39 -81 1 685 3380 61 14 0 chr11 13144361 13144801 -108699055 - L1_Mus1 LINE L1 -534 6033 5588 1 685 1475 75 25 5 chr11 13144792 13144992 -108698864 + L1_Mus1 LINE L1 6064 6267 -300 1 685 1606 241 233 7 chr11 13144992 13145367 -108698489 - ORR1B2-int LTR MaLR -576 933 525 1 685 896 123 7 0 chr11 13145367 13145513 -108698343 + (TTCC)n Simple_repeat Simple_repeat 3 149 0 1 685 1606 241 233 7 chr11 13145513 13145628 -108698228 - ORR1B2-int LTR MaLR -985 524 289 1 685 1112 119 6 0 chr11 13145628 13145805 -108698051 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1 685 1606 241 233 7 chr11 13145805 13145995 -108697861 - ORR1B2-int LTR MaLR -1221 288 99 1 685 710 282 65 78 chr11 13146290 13146633 -108697223 - RLTR26 LTR ERVK -226 416 47 1 685 536 151 18 17 chr11 13146661 13146769 -108697087 - ORR1B2-int LTR MaLR -988 110 2 1 685 1415 192 64 0 chr11 13146772 13147038 -108696818 - ORR1B2 LTR MaLR 0 367 85 1 685 24 32 0 0 chr11 13148746 13148777 -108695079 + AT_rich Low_complexity Low_complexity 1 31 0 1 685 283 363 131 30 chr11 13149319 13149518 -108694338 + MIR SINE MIR 10 228 -34 1 685 248 257 75 75 chr11 13150785 13150932 -108692924 + ORR1E LTR MaLR 1 147 -212 1 685 433 397 23 6 chr11 13151414 13151589 -108692267 + B4 SINE B4 41 218 -74 1 685 390 42 0 0 chr11 13151663 13151711 -108692145 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 685 8469 22 2 0 chr11 13151905 13153561 -108690295 - L1Md_A LINE L1 0 6582 4923 1 685 25 31 0 0 chr11 13153678 13153710 -108690146 + AT_rich Low_complexity Low_complexity 1 32 0 1 685 217 167 37 0 chr11 13154094 13154148 -108689708 + C-rich Low_complexity Low_complexity 4 59 0 1 685 3278 65 0 2 chr11 13155250 13155668 -108688188 + L1_Mus2 LINE L1 6149 6565 -1 1 685 330 278 88 42 chr11 13156358 13156621 -108687235 - Charlie7 DNA MER1_type -174 2438 2164 1 685 248 70 0 23 chr11 13156682 13156726 -108687130 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 685 2083 237 39 46 chr11 13157136 13157243 -108686613 - RLTR20B2 LTR ERVK 0 560 466 1 685 771 21 0 0 chr11 13157243 13157336 -108686520 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 685 2083 237 39 46 chr11 13157336 13157790 -108686066 - RLTR20B2 LTR ERVK -95 465 3 1 685 1712 223 160 51 chr11 13157880 13158410 -108685446 + RMER20B LTR ERVK 10 597 -30 1 685 256 330 110 0 chr11 13158413 13158550 -108685306 - B4A SINE B4 -65 159 1 1 685 280 321 41 62 chr11 13158585 13158731 -108685125 + ID_B1 SINE B4 81 223 -1 1 685 1206 225 88 32 chr11 13159597 13160028 -108683828 + Lx9 LINE L1 7124 7578 -66 1 685 23 0 0 0 chr11 13160071 13160094 -108683762 + AT_rich Low_complexity Low_complexity 1 23 0 1 685 486 0 0 0 chr11 13160336 13160390 -108683466 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 685 355 267 46 37 chr11 13162702 13162811 -108681045 + RSINE1 SINE B4 12 121 -44 1 685 420 20 0 0 chr11 13162826 13162875 -108680981 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 685 517 295 80 24 chr11 13164133 13164421 -108679435 - L1_Rod LINE L1 -6310 862 559 1 685 369 0 0 0 chr11 13164454 13164495 -108679361 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1 685 225 0 0 0 chr11 13164530 13164555 -108679301 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 1 685 233 313 0 0 chr11 13164665 13164732 -108679124 - ID4_ SINE ID -15 68 2 1 685 233 348 0 22 chr11 13164917 13165008 -108678848 + L3 LINE CR1 4218 4306 -183 1 685 907 83 8 0 chr11 13165312 13165433 -108678423 - B1_Mm SINE Alu -21 126 5 1 685 458 209 0 106 chr11 13165326 13165449 -108678407 - MT2B LTR ERVL -337 264 155 1 685 195 139 0 0 chr11 13165449 13165485 -108678371 + (T)n Simple_repeat Simple_repeat 1 36 0 1 685 999 178 62 5 chr11 13166299 13166508 -108677348 - Lx3C LINE L1 -2 6974 6754 1 685 1898 164 54 92 chr11 13168019 13168521 -108675335 - RLTR28 LTR ERVL -12 512 30 1 685 401 372 54 0 chr11 13169403 13169607 -108674249 + ID_B1 SINE B4 5 219 -5 2 685 1430 54 0 5 chr11 13170251 13170437 -108673419 + L1Md_F3 LINE L1 6386 6570 -14 2 685 2169 238 96 14 chr11 13173851 13174511 -108669345 - Lx9 LINE L1 -1 7643 6930 2 685 1741 54 5 0 chr11 13175097 13175318 -108668538 - L1_Mus1 LINE L1 0 6567 6346 2 685 420 55 0 0 chr11 13176157 13176212 -108667644 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 685 32 67 0 0 chr11 13176236 13176296 -108667560 + AT_rich Low_complexity Low_complexity 1 60 0 2 685 194 105 0 26 chr11 13176312 13176351 -108667505 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 685 24 53 0 0 chr11 13176665 13176703 -108667153 + AT_rich Low_complexity Low_complexity 1 38 0 2 685 281 329 166 40 chr11 13177160 13177407 -108666449 - MLT1E1A LTR MaLR -213 467 190 2 685 22441 133 48 22 chr11 13177540 13180767 -108663089 - L1_Mus2 LINE L1 0 6566 3183 2 685 459 0 0 0 chr11 13180767 13180818 -108663038 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 2 685 22441 164 56 35 chr11 13180818 13183680 -108660176 - L1_Mus2 LINE L1 -2701 3182 318 2 685 192 235 0 0 chr11 13184485 13184553 -108659303 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 685 352 403 7 39 chr11 13184630 13184785 -108659071 + RSINE1 SINE B4 2 151 -14 2 685 232 285 169 0 chr11 13184770 13184900 -108658956 - RLTR22_Mur LTR ERVK -389 1459 1308 2 685 375 262 0 0 chr11 13185447 13185531 -108658325 + B1F SINE Alu 66 149 0 2 685 370 377 19 7 chr11 13185533 13185688 -108658168 + RSINE1 SINE B4 2 158 -7 2 685 628 152 15 0 chr11 13185716 13185848 -108658008 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 685 216 303 45 0 chr11 13185876 13185965 -108657891 + GA-rich Low_complexity Low_complexity 3 95 0 2 685 240 338 13 53 chr11 13186002 13186077 -108657779 - ID4_ SINE ID -10 73 2 2 685 239 241 12 24 chr11 13187022 13187107 -108656749 + T-rich Low_complexity Low_complexity 3 86 0 2 685 1079 73 0 0 chr11 13187373 13187509 -108656347 + B1_Mus1 SINE Alu 1 136 -12 2 685 290 45 0 22 chr11 13187509 13187554 -108656302 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2 685 35193 44 1 3 chr11 13187630 13192752 -108651104 + L1Md_T LINE L1 383 5589 -297 2 685 8380 37 0 0 chr11 13192752 13193748 -108650108 + L1Md_T LINE L1 5590 6585 0 2 685 414 351 74 33 chr11 13193838 13194109 -108649747 - MER67A LTR ERV1 -160 383 102 2 685 819 351 35 65 chr11 13194789 13195386 -108648470 + Lx8 LINE L1 6895 7473 0 2 685 923 169 6 0 chr11 13195969 13196146 -108647710 + CT-rich Low_complexity Low_complexity 2 179 0 2 685 351 361 109 22 chr11 13196155 13196339 -108647517 - B3 SINE B2 -11 205 6 2 685 380 374 79 11 chr11 13197150 13197176 -108646680 + MTEa LTR MaLR 14 38 -341 2 685 206 32 32 0 chr11 13197176 13197207 -108646649 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 685 380 344 102 15 chr11 13197207 13197484 -108646372 + MTEa LTR MaLR 39 345 -34 2 685 27 0 0 0 chr11 13197565 13197592 -108646264 + AT_rich Low_complexity Low_complexity 1 27 0 2 685 13103 150 16 4 chr11 13197595 13199899 -108643957 + L1_Mm LINE L1 2916 5245 -638 2 685 3495 148 37 57 chr11 13199900 13200602 -108643254 + L1_Mus3 LINE L1 5951 6638 0 2 685 957 132 0 0 chr11 13200640 13200784 -108643072 - B1_Mus1 SINE Alu 0 148 5 2 685 812 157 0 2 chr11 13201162 13201306 -108642550 - L1_Mus4 LINE L1 -179 6459 6337 2 685 3231 159 36 52 chr11 13201302 13202536 -108641320 - L1VL4 LINE L1 -2183 1376 171 2 685 8516 223 18 124 chr11 13202527 13204681 -108639175 - L1_Mus4 LINE L1 -625 6011 4382 2 685 694 68 25 0 chr11 13204681 13204799 -108639057 + L1_Mus3 LINE L1 6508 6628 -10 2 685 12241 199 127 31 chr11 13204799 13208587 -108635269 - L1_Mus4 LINE L1 -949 4928 797 2 685 258 32 0 0 chr11 13209036 13209067 -108634789 + (T)n Simple_repeat Simple_repeat 1 31 0 2 685 37862 30 1 0 chr11 13209182 13216235 -108627621 - L1Md_T LINE L1 0 6585 1 2 685 369 302 79 53 chr11 13216575 13216764 -108627092 + L1M5 LINE L1 3459 3652 -2494 2 685 258 209 60 0 chr11 13217369 13217436 -108626420 + L1MEf LINE L1 827 897 -5303 2 685 362 333 104 37 chr11 13217787 13218055 -108625801 + L1MEf LINE L1 1314 1599 -4601 2 685 2900 36 7 106 chr11 13218211 13218644 -108625212 - RLTR10 LTR ERVK 0 390 1 2 685 779 311 81 7 chr11 13218880 13219224 -108624632 + Lx6 LINE L1 130 682 -7046 2 685 1055 241 37 108 chr11 13219232 13219608 -108624248 + Lx6 LINE L1 859 1210 -6518 2 685 243 0 0 0 chr11 13219608 13219635 -108624221 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 2 685 1055 241 37 108 chr11 13219635 13219750 -108624106 + Lx6 LINE L1 1211 1315 -6413 2 685 2014 223 25 25 chr11 13219763 13219821 -108624035 + Lx6 LINE L1 4003 4059 -1821 2 685 2798 150 85 127 chr11 13219821 13220747 -108623109 + RMER17D LTR ERVK 1 887 -2 2 685 2014 223 25 25 chr11 13220747 13221213 -108622643 + Lx6 LINE L1 4060 4527 -1353 2 685 1264 228 21 36 chr11 13221211 13221548 -108622308 + Lx6 LINE L1 4800 5131 -749 2 685 4211 243 33 19 chr11 13221539 13222773 -108621083 + Lx6 LINE L1 5487 6746 -714 2 685 707 223 91 25 chr11 13222775 13222973 -108620883 + Lx6 LINE L1 7246 7456 -4 2 685 1133 51 0 0 chr11 13223665 13223803 -108620053 - B1_Mus2 SINE Alu -9 138 1 2 685 236 263 30 50 chr11 13223865 13223965 -108619891 - ORR1E LTR MaLR 0 359 262 2 685 2915 191 57 16 chr11 13224330 13224963 -108618893 + RMER6A LTR ERVK 90 748 -8 2 685 747 275 48 51 chr11 13225041 13225435 -108618421 + L1_Mur3 LINE L1 2604 2996 -2884 2 685 25508 121 13 29 chr11 13225466 13228671 -108615185 + L1VL1 LINE L1 365 3423 -2460 2 685 8289 29 6 5 chr11 13228671 13229663 -108614193 + L1Md_F2 LINE L1 5587 6579 -3 2 685 25508 124 14 42 chr11 13229663 13231759 -108612097 + L1VL1 LINE L1 3424 5552 -331 2 685 2556 254 84 33 chr11 13231815 13233012 -108610844 - L1_Mur3 LINE L1 -3364 2516 1259 2 685 1262 111 6 0 chr11 13233025 13233205 -108610651 + B2_Mm1t SINE B2 2 182 -11 2 685 251 284 69 23 chr11 13233205 13233360 -108610496 + L1_Mur3 LINE L1 2969 3131 -2749 2 685 2818 73 0 0 chr11 13233360 13233732 -108610124 + L1Md_A LINE L1 6211 6582 0 2 685 251 284 69 23 chr11 13233732 13233749 -108610107 + L1_Mur3 LINE L1 3132 3149 -2731 2 685 1408 264 77 35 chr11 13233737 13234390 -108609466 + L1_Mur3 LINE L1 3255 3934 -1946 2 685 312 353 55 8 chr11 13234695 13234952 -108608904 + L1M5 LINE L1 4204 4472 -1674 2 685 289 347 107 0 chr11 13235236 13235357 -108608499 + RSINE1 SINE B4 2 135 -30 2 685 399 41 0 0 chr11 13235358 13235407 -108608449 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 685 327 326 99 5 chr11 13236518 13236709 -108607147 + L1M5 LINE L1 4577 4785 -1361 2 685 23 68 0 0 chr11 13236880 13236924 -108606932 + AT_rich Low_complexity Low_complexity 1 44 0 2 85 439 291 72 6 chr11 13238228 13238394 -108605462 - RMER5 LTR ERV1 -9 525 349 2 686 1443 310 119 39 chr11 13238453 13239225 -108604631 + Lx8 LINE L1 6581 7414 -59 2 686 30 59 0 0 chr11 13239244 13239295 -108604561 + AT_rich Low_complexity Low_complexity 1 51 0 2 686 8846 114 27 12 chr11 13239310 13241028 -108602828 - Lx3_Mus LINE L1 -16 6993 5252 2 686 2867 206 71 57 chr11 13241013 13241835 -108602021 - Lx3_Mus LINE L1 -5910 1074 110 2 686 263 308 65 0 chr11 13241886 13241993 -108601863 - L1MA6 LINE L1 -31 6269 6156 2 686 5030 106 48 0 chr11 13242010 13242777 -108601079 - L1_Mus2 LINE L1 0 6566 5783 2 686 193 104 0 40 chr11 13242777 13242807 -108601049 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2 686 906 94 8 0 chr11 13242811 13242939 -108600917 - B1_Mm SINE Alu 0 147 19 2 686 229 111 0 0 chr11 13242939 13242975 -108600881 - L1_Mm LINE L1 -90 5793 5758 2 686 2302 92 0 0 chr11 13242973 13243277 -108600579 + L1_Mm LINE L1 5471 5774 -109 2 686 919 47 16 0 chr11 13243318 13243447 -108600409 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 2 686 210 206 0 0 chr11 13243452 13243515 -108600341 + GA-rich Low_complexity Low_complexity 2 64 0 2 686 266 348 7 74 chr11 13244085 13244234 -108599622 + ORR1D2 LTR MaLR 8 146 -224 2 686 22 0 0 0 chr11 13244234 13244256 -108599600 + AT_rich Low_complexity Low_complexity 1 22 0 2 686 7952 53 2 2 chr11 13244383 13245849 -108598007 - L1Md_F2 LINE L1 -20 6562 5099 2 686 37552 44 1 3 chr11 13245853 13252081 -108591775 - L1Md_T LINE L1 0 6585 271 2 686 28969 84 1 17 chr11 13252082 13256817 -108587039 - L1Md_F2 LINE L1 -769 5114 459 2 686 3559 236 19 61 chr11 13256844 13257795 -108586061 + RMER12B LTR ERVK 1 911 -493 2 686 977 244 81 62 chr11 13257903 13258275 -108585581 - Lx9 LINE L1 -434 7210 6832 2 686 254 209 0 56 chr11 13258375 13258446 -108585410 - Lx5 LINE L1 -3 7047 6981 2 686 2857 60 3 0 chr11 13258452 13258819 -108585037 - IAPEY_LTR LTR ERVK -17 368 1 2 686 289 281 61 0 chr11 13258819 13258901 -108584955 - Lx5 LINE L1 -358 6692 6606 2 686 957 117 14 0 chr11 13258935 13259080 -108584776 + Lx5 LINE L1 5807 5953 -1097 2 686 449 258 61 25 chr11 13259130 13259293 -108584563 - RMER15 LTR ERVL -1 574 406 2 686 24 32 0 0 chr11 13259744 13259775 -108584081 + AT_rich Low_complexity Low_complexity 1 31 0 2 686 248 259 51 17 chr11 13259950 13260068 -108583788 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 2 686 372 335 79 37 chr11 13260450 13260639 -108583217 - B3A SINE B2 0 198 2 2 686 27 29 0 0 chr11 13261094 13261128 -108582728 + AT_rich Low_complexity Low_complexity 1 34 0 2 686 1074 96 0 0 chr11 13261146 13261292 -108582564 - B1_Mm SINE Alu -1 146 1 2 686 5870 145 29 20 chr11 13262136 13263207 -108580649 - Lx3C LINE L1 0 6976 5897 2 686 435 221 19 0 chr11 13263207 13263311 -108580545 - L1_Mur1 LINE L1 -6124 858 753 2 686 231 336 45 13 chr11 13263651 13263805 -108580051 + L1_Rod LINE L1 1224 1382 -4465 2 686 1579 202 114 3 chr11 13263958 13264291 -108579565 + ORR1C1 LTR MaLR 1 370 -8 2 686 559 212 76 0 chr11 13264294 13264412 -108579444 + ORR1C1-int LTR MaLR 1 127 -1243 2 686 6018 60 5 24 chr11 13264412 13265218 -108578638 + L1_Mus2 LINE L1 5776 6566 0 2 686 279 0 0 0 chr11 13265368 13265399 -108578457 + (A)n Simple_repeat Simple_repeat 1 31 0 2 686 468 297 84 37 chr11 13265405 13265951 -108577905 + L1_Mur3 LINE L1 2865 3436 -2444 2 686 698 326 136 5 chr11 13265952 13266334 -108577522 + Lx8 LINE L1 6374 6805 -668 2 686 786 250 60 9 chr11 13266369 13266587 -108577269 + Lx8 LINE L1 6894 7122 -351 2 686 21 0 0 0 chr11 13266833 13266854 -108577002 + AT_rich Low_complexity Low_complexity 1 21 0 2 686 216 143 0 0 chr11 13266902 13266944 -108576912 + (T)n Simple_repeat Simple_repeat 1 42 0 2 686 1127 68 7 7 chr11 13266945 13267092 -108576764 - B1_Mm SINE Alu 0 147 1 2 686 661 359 28 8 chr11 13268155 13268408 -108575448 + ORR1C1-int LTR MaLR 848 1105 -475 2 686 276 313 121 17 chr11 13268775 13269256 -108574600 - L1MEc LINE L1 -4084 2316 1786 2 686 406 302 57 0 chr11 13270948 13271054 -108572802 + PB1D7 SINE Alu 2 113 -7 2 686 183 227 114 0 chr11 13272174 13272218 -108571638 - L3 LINE CR1 -151 4338 4290 2 686 200 86 29 0 chr11 13272360 13272395 -108571461 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 686 1068 109 0 0 chr11 13272395 13272542 -108571314 - B1_Mus1 SINE Alu 0 148 2 2 686 315 0 0 0 chr11 13272542 13272577 -108571279 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 2 686 804 171 7 27 chr11 13272587 13272737 -108571119 - B1_Mur3 SINE Alu 0 149 3 3 686 25 31 0 0 chr11 13272984 13273016 -108570840 + AT_rich Low_complexity Low_complexity 1 32 0 3 686 9831 46 6 0 chr11 13273515 13275176 -108568680 - L1Md_F3 LINE L1 -235 6349 4675 3 686 2372 35 0 7 chr11 13275176 13275466 -108568390 + L1Md_F3 LINE L1 6295 6582 -2 3 686 249 265 24 24 chr11 13276596 13276681 -108567175 - L1MD LINE L1 -592 5650 5566 3 686 389 363 38 12 chr11 13277992 13278232 -108565624 + Lx9 LINE L1 7179 7424 -220 3 686 24 32 0 0 chr11 13278959 13278990 -108564866 + AT_rich Low_complexity Low_complexity 1 31 0 3 686 35260 37 0 0 chr11 13279109 13284750 -108559106 + L1Md_T LINE L1 1 5589 -297 3 686 8954 7 0 0 chr11 13284750 13285746 -108558110 + L1Md_T LINE L1 5590 6585 0 3 686 21 0 0 0 chr11 13286173 13286194 -108557662 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 23 33 0 0 chr11 13286277 13286307 -108557549 + AT_rich Low_complexity Low_complexity 1 30 0 3 686 321 298 11 0 chr11 13286475 13286569 -108557287 + GA-rich Low_complexity Low_complexity 5 99 0 3 686 396 331 62 6 chr11 13286668 13286847 -108557009 + LTR48 LTR ERV1 556 744 -43 3 686 549 0 0 0 chr11 13286964 13287025 -108556831 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 686 23 0 0 0 chr11 13287037 13287060 -108556796 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 418 285 177 0 chr11 13287060 13287190 -108556666 - B3 SINE B2 -63 153 1 3 686 275 229 0 20 chr11 13287482 13287580 -108556276 + GA-rich Low_complexity Low_complexity 1 96 0 3 686 228 35 0 0 chr11 13287582 13287611 -108556245 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 3 686 538 271 0 47 chr11 13287622 13287707 -108556149 - B3A SINE B2 -76 122 40 3 686 1123 236 129 9 chr11 13287707 13288041 -108555815 + ORR1D1 LTR MaLR 1 374 0 3 686 538 271 0 47 chr11 13288041 13288083 -108555773 - B3A SINE B2 -159 39 1 3 686 983 90 7 0 chr11 13288176 13288320 -108555536 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 3 686 226 275 107 8 chr11 13288742 13288863 -108554993 - Lx7 LINE L1 -2 7694 7562 3 686 795 239 65 0 chr11 13288947 13289148 -108554708 - Lx7 LINE L1 -286 7410 7197 3 686 430 150 38 0 chr11 13289150 13289230 -108554626 + B2_Mm2 SINE B2 102 184 -11 3 686 678 226 93 16 chr11 13289232 13289425 -108554431 - Lx7 LINE L1 -498 7198 6991 3 686 304 308 94 50 chr11 13289994 13290175 -108553681 + MLT1E2 LTR MaLR 3 191 -436 3 686 277 304 99 8 chr11 13290194 13290355 -108553501 + MLT1E2 LTR MaLR 614 675 -5 3 686 706 241 15 0 chr11 13290460 13290597 -108553259 - B1_Mur4 SINE Alu -6 144 6 3 686 259 321 92 6 chr11 13291061 13291224 -108552632 + L1MC4 LINE L1 6665 6841 -1201 3 686 7402 83 7 3 chr11 13291340 13292596 -108551260 - L1_Mus2 LINE L1 0 6566 5301 3 686 2601 106 18 5 chr11 13292599 13292979 -108550877 + IAPEY_LTR LTR ERVK 1 385 0 3 686 6670 122 9 27 chr11 13292979 13294056 -108549800 + IAPEy-int LTR ERVK 1 1058 -6455 3 686 20551 72 4 6 chr11 13294056 13296771 -108547085 + IAPEy-int LTR ERVK 4804 7513 0 3 686 2549 119 5 0 chr11 13296775 13297163 -108546693 - L1_Mus2 LINE L1 -582 5301 4912 3 686 8421 117 19 4 chr11 13297153 13298477 -108545379 - L1_Mus2 LINE L1 -3291 2592 1248 3 686 289 58 19 19 chr11 13298477 13298530 -108545326 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 3 686 8421 146 37 86 chr11 13298530 13298640 -108545216 - L1_Mus2 LINE L1 -5409 1248 1150 3 686 3710 67 28 4 chr11 13298640 13299138 -108544718 - L1Md_F2 LINE L1 0 6582 6073 3 686 2560 196 74 63 chr11 13299138 13300064 -108543792 - L1_Mus2 LINE L1 -5411 1205 396 3 686 492 304 162 15 chr11 13300253 13300587 -108543269 + L1M5 LINE L1 3296 3678 -2468 3 686 4391 140 8 4 chr11 13301685 13302416 -108541440 - Lx LINE L1 -4 6650 5917 3 686 1381 43 5 5 chr11 13302579 13302764 -108541092 + L1Md_F2 LINE L1 6398 6582 0 3 686 808 287 40 24 chr11 13303305 13303555 -108540301 + MTEb LTR MaLR 121 374 -5 3 686 1179 223 92 10 chr11 13305113 13305417 -108538439 - Lx9 LINE L1 -247 7397 7069 3 686 412 202 26 82 chr11 13305395 13305589 -108538267 + Lx9 LINE L1 7461 7643 -1 3 686 27 0 0 0 chr11 13305590 13305617 -108538239 + AT_rich Low_complexity Low_complexity 1 27 0 3 686 443 322 158 50 chr11 13305836 13306235 -108537621 + MLT2B1 LTR ERVL 10 451 -69 3 686 258 32 0 0 chr11 13306418 13306449 -108537407 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 3 686 458 202 37 46 chr11 13306508 13306617 -108537239 - ORR1D1 LTR MaLR -256 118 11 3 686 187 307 65 26 chr11 13307041 13307118 -108536738 - L4 LINE RTE -1568 461 382 3 686 515 276 84 19 chr11 13307314 13307469 -108536387 + B4 SINE B4 106 270 -22 3 686 231 146 0 0 chr11 13307884 13307925 -108535931 - HAL1 LINE L1 -919 1588 1548 3 686 312 137 0 0 chr11 13307985 13308036 -108535820 + (TCC)n Simple_repeat Simple_repeat 2 52 0 3 686 348 24 0 0 chr11 13308075 13308116 -108535740 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 686 198 0 0 0 chr11 13308387 13308409 -108535447 + (T)n Simple_repeat Simple_repeat 1 22 0 3 686 627 338 57 14 chr11 13308608 13308887 -108534969 + MER70B LTR ERVL 4 294 -284 3 686 1733 79 8 0 chr11 13310724 13310964 -108532892 + MTA_Mm LTR MaLR 1 242 -154 3 686 704 86 9 0 chr11 13310991 13311096 -108532760 + (GA)n Simple_repeat Simple_repeat 2 107 0 3 686 549 291 44 39 chr11 13312479 13312661 -108531195 + ORR1D1 LTR MaLR 1 183 -191 3 686 544 158 9 9 chr11 13312662 13312777 -108531079 + CT-rich Low_complexity Low_complexity 3 117 0 3 686 395 273 49 16 chr11 13312792 13312915 -108530941 + ORR1D1 LTR MaLR 248 374 0 3 686 25 31 0 0 chr11 13314037 13314069 -108529787 + AT_rich Low_complexity Low_complexity 1 32 0 3 686 195 129 0 0 chr11 13315003 13315034 -108528822 + (A)n Simple_repeat Simple_repeat 1 31 0 3 686 831 305 80 29 chr11 13315040 13315766 -108528090 + L1MA5 LINE L1 5117 5906 -394 3 686 247 179 0 35 chr11 13315884 13315942 -108527914 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 686 1804 143 99 31 chr11 13317780 13318163 -108525693 - RLTR9E LTR ERVK 0 409 1 3 686 760 121 8 8 chr11 13318361 13318486 -108525370 + URR1B DNA MER1_type 101 225 0 3 686 233 285 56 83 chr11 13318486 13318664 -108525192 + B2_Mm2 SINE B2 16 188 -7 3 686 284 296 0 12 chr11 13318682 13318764 -108525092 + ID4_ SINE ID 1 81 -2 3 686 664 294 46 59 chr11 13319716 13320020 -108523836 - RMER15 LTR ERVL 0 575 276 3 686 285 253 81 88 chr11 13320037 13320197 -108523659 - RMER15 LTR ERVL -416 159 1 3 686 450 319 40 63 chr11 13320733 13320907 -108522949 - B3A SINE B2 -28 170 1 3 686 274 343 29 40 chr11 13321073 13321246 -108522610 + MLT1A LTR MaLR 34 204 -170 3 686 1209 157 5 0 chr11 13321278 13321482 -108522374 - L1VL4 LINE L1 -5904 398 194 3 686 29 47 0 0 chr11 13321492 13321535 -108522321 + AT_rich Low_complexity Low_complexity 1 43 0 3 686 1255 234 92 15 chr11 13321659 13321984 -108521872 + ORR1D1 LTR MaLR 9 358 -16 3 686 498 198 0 20 chr11 13322002 13322100 -108521756 + IAPLTR4 LTR ERVK 242 337 -8 3 686 264 111 0 0 chr11 13322209 13322254 -108521602 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 3 686 330 26 0 0 chr11 13322256 13322295 -108521561 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 686 385 329 20 14 chr11 13322770 13322904 -108520952 - PB1D10 SINE Alu -15 132 5 3 686 245 326 20 39 chr11 13322816 13322918 -108520938 - ID_B1 SINE B4 -49 175 76 3 686 288 0 0 0 chr11 13323383 13323415 -108520441 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 3 686 300 338 68 43 chr11 13323519 13323680 -108520176 - MER5A1 DNA MER1_type 0 166 2 3 686 251 28 0 27 chr11 13323826 13323863 -108519993 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 686 328 262 194 52 chr11 13324253 13324660 -108519196 + L1_Mur3 LINE L1 31 272 -7440 3 686 216 97 0 0 chr11 13325604 13325635 -108518221 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 3 686 618 99 0 0 chr11 13325949 13326040 -108517816 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 3 686 459 283 20 0 chr11 13326047 13326146 -108517710 - B1_Mur1 SINE Alu -39 110 10 3 686 189 0 0 0 chr11 13326457 13326478 -108517378 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 686 22 0 0 0 chr11 13326581 13326603 -108517253 + AT_rich Low_complexity Low_complexity 1 22 0 3 686 1593 138 49 64 chr11 13327804 13328130 -108515726 + ORR1A4 LTR MaLR 1 321 -8 3 686 742 333 53 45 chr11 13328608 13329007 -108514849 - RMER5 LTR ERV1 -132 402 1 3 686 1138 338 134 64 chr11 13329038 13329844 -108514012 - MTE-int LTR MaLR -59 1521 617 3 686 857 100 8 0 chr11 13329844 13329974 -108513882 + (TTTC)n Simple_repeat Simple_repeat 3 133 0 3 686 215 31 0 30 chr11 13329982 13330015 -108513841 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 686 1138 338 134 64 chr11 13330015 13330620 -108513236 - MTE-int LTR MaLR -971 609 1 3 686 221 0 35 0 chr11 13330684 13330713 -108513143 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 686 304 40 20 20 chr11 13330892 13330943 -108512913 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 686 3981 218 38 65 chr11 13333212 13334256 -108509600 - RLTR13D2 LTR ERVK -7 1016 1 3 686 234 0 0 0 chr11 13334787 13334813 -108509043 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 686 857 62 0 0 chr11 13334813 13334926 -108508930 - B1_Mus1 SINE Alu -10 138 26 3 686 295 102 14 28 chr11 13334940 13335011 -108508845 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 3 686 282 146 0 0 chr11 13335011 13335052 -108508804 - B1_Mur4 SINE Alu -109 41 1 3 686 228 200 0 22 chr11 13335013 13335059 -108508797 - B4 SINE B4 -169 123 79 3 686 4194 107 121 56 chr11 13335342 13336177 -108507679 - RMER17D LTR ERVK 0 889 1 3 686 221 140 19 57 chr11 13336794 13336847 -108507009 + (TTAA)n Simple_repeat Simple_repeat 2 52 0 3 686 255 200 32 105 chr11 13338532 13338627 -108505229 + MER34A1 LTR ERV1 426 513 -74 3 686 432 97 0 0 chr11 13339116 13339178 -108504678 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 686 522 299 58 53 chr11 13339251 13339459 -108504397 + MER34A1 LTR ERV1 3 211 -376 3 686 542 122 78 0 chr11 13339539 13339629 -108504227 + L1_Mus2 LINE L1 5907 6003 -633 3 686 1679 81 19 71 chr11 13339629 13339896 -108503960 + L1_Mus2 LINE L1 6306 6558 -8 3 686 4213 134 3 3 chr11 13339920 13340570 -108503286 + Lx LINE L1 5998 6647 -7 3 686 871 298 221 5 chr11 13340670 13341324 -108502532 + Lx6 LINE L1 6638 7433 -27 3 686 25 51 0 0 chr11 13341324 13341363 -108502493 + AT_rich Low_complexity Low_complexity 1 39 0 3 686 3336 90 14 4 chr11 13341628 13342118 -108501738 + L1_Mus4 LINE L1 6134 6628 -8 3 686 221 277 24 12 chr11 13342712 13342796 -108501060 + GA-rich Low_complexity Low_complexity 3 87 0 3 686 1960 213 63 0 chr11 13342904 13343299 -108500557 + MTC LTR MaLR 2 421 0 4 686 22 0 0 0 chr11 13343715 13343737 -108500119 + AT_rich Low_complexity Low_complexity 1 22 0 4 686 27 0 0 0 chr11 13343786 13343813 -108500043 + AT_rich Low_complexity Low_complexity 1 27 0 4 686 462 137 0 0 chr11 13344592 13344687 -108499169 + (TATG)n Simple_repeat Simple_repeat 2 96 0 4 686 3439 157 28 46 chr11 13344728 13345382 -108498474 + RLTR26 LTR ERVK 1 642 0 4 686 2787 124 70 2 chr11 13345382 13345810 -108498046 + MERVK26-int LTR ERVK 1 457 -6462 4 686 453 188 10 40 chr11 13345810 13345910 -108497946 - RLTR26 LTR ERVK -545 97 1 4 686 8232 110 48 20 chr11 13345910 13346151 -108497705 + Lx3_Mus LINE L1 5653 5903 -1106 4 686 326 23 23 0 chr11 13346151 13346194 -108497662 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 686 8232 110 48 20 chr11 13346194 13347271 -108496585 + Lx3_Mus LINE L1 5904 7008 -1 4 686 312 268 21 0 chr11 13347401 13347498 -108496358 - Lx9 LINE L1 -648 6996 6898 4 686 328 178 13 64 chr11 13348074 13348152 -108495704 - ORR1A3 LTR MaLR 0 326 253 4 686 575 352 90 42 chr11 13348748 13348840 -108495016 + ERVL-B4-int LTR ERVL 815 914 -4800 4 686 1963 116 9 51 chr11 13348840 13349176 -108494680 - RLTRETN_Mm LTR ERVK 0 322 1 4 686 575 352 90 42 chr11 13349176 13349705 -108494151 + ERVL-B4-int LTR ERVL 915 1466 -4248 4 686 8712 145 13 5 chr11 13350334 13351784 -108492072 - Lx2 LINE L1 -5 6992 5531 4 686 1147 162 0 0 chr11 13351783 13351974 -108491882 + Lx2 LINE L1 5315 5505 -378 4 686 444 51 0 0 chr11 13352506 13352565 -108491291 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 686 3474 54 2 0 chr11 13354833 13355260 -108488596 + L1_Mus1 LINE L1 6140 6567 0 4 686 216 0 0 0 chr11 13355726 13355750 -108488106 + (T)n Simple_repeat Simple_repeat 1 24 0 4 686 1060 109 0 0 chr11 13355750 13355897 -108487959 - B1_Mus2 SINE Alu 0 147 1 4 686 198 260 60 0 chr11 13355932 13355982 -108487874 + MIR SINE MIR 17 69 -193 4 686 26 30 0 0 chr11 13356199 13356232 -108487624 + AT_rich Low_complexity Low_complexity 1 33 0 4 686 243 347 77 6 chr11 13356462 13356630 -108487226 - L2 LINE L2 -696 2723 2544 4 686 194 179 18 0 chr11 13357368 13357424 -108486432 + GA-rich Low_complexity Low_complexity 2 58 0 4 686 1052 0 16 0 chr11 13357912 13358035 -108485821 + (GAAA)n Simple_repeat Simple_repeat 1 125 0 4 686 227 342 13 0 chr11 13358066 13358142 -108485714 + RSINE1 SINE B4 55 131 -34 4 686 333 0 0 0 chr11 13358229 13358266 -108485590 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 686 285 375 76 22 chr11 13358828 13359052 -108484804 + MIR SINE MIR 14 249 -13 4 686 537 97 79 22 chr11 13360416 13360519 -108483337 - RMER17A2 LTR ERVK -194 712 568 4 686 1174 292 76 5 chr11 13360519 13360912 -108482944 - Lx8 LINE L1 -391 7082 6662 4 686 211 217 0 21 chr11 13361570 13361617 -108482239 + CT-rich Low_complexity Low_complexity 3 48 0 4 686 22 80 0 0 chr11 13362817 13362867 -108480989 + AT_rich Low_complexity Low_complexity 1 50 0 4 686 655 322 34 29 chr11 13362882 13363294 -108480562 - L1MA5 LINE L1 -370 5930 5517 4 686 649 79 10 10 chr11 13363810 13363912 -108479944 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 4 686 1009 303 42 29 chr11 13363915 13364442 -108479414 - L1M2 LINE L1 -509 5788 5255 4 686 627 323 55 24 chr11 13364472 13365160 -108478696 - L1_Mur3 LINE L1 -670 5486 4740 4 686 1057 89 7 0 chr11 13365368 13365514 -108478342 + B1_Mus2 SINE Alu 1 147 0 4 686 1004 88 14 0 chr11 13365536 13365684 -108478172 + (GAAA)n Simple_repeat Simple_repeat 2 151 0 4 686 357 274 96 30 chr11 13365883 13366101 -108477755 + L1_Mur3 LINE L1 2069 2290 -3557 4 686 706 112 0 25 chr11 13366241 13366360 -108477496 + Lx LINE L1 5693 5808 -846 4 686 11096 58 10 1 chr11 13366381 13368501 -108475355 - L1Md_F2 LINE L1 0 6582 4444 4 686 4210 122 8 5 chr11 13368501 13369154 -108474702 + Lx LINE L1 5792 6454 -546 4 686 1237 68 17 0 chr11 13369154 13369330 -108474526 + (CAAAA)n Simple_repeat Simple_repeat 1 179 0 4 85 372 94 0 0 chr11 13369331 13369384 -108474472 + (CAAAG)n Simple_repeat Simple_repeat 1 53 0 4 687 3815 227 64 60 chr11 13369384 13369932 -108473924 + Lx LINE L1 6455 7000 0 4 687 306 292 16 23 chr11 13369935 13370083 -108473773 + L1_Mur3 LINE L1 3623 3776 -2367 4 687 414 0 0 0 chr11 13370400 13370446 -108473410 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 687 780 280 77 8 chr11 13370462 13370721 -108473135 - Lx9 LINE L1 -206 7438 7162 4 687 351 44 0 0 chr11 13370791 13370836 -108473020 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 687 285 344 191 31 chr11 13370976 13371594 -108472262 + BLACKJACK DNA AcHobo 1705 2421 -523 4 687 5115 78 10 9 chr11 13374297 13374995 -108468861 + L1Md_F2 LINE L1 5881 6579 -3 4 687 22 35 0 0 chr11 13375583 13375612 -108468244 + AT_rich Low_complexity Low_complexity 1 29 0 4 687 23 0 0 0 chr11 13376099 13376122 -108467734 + AT_rich Low_complexity Low_complexity 1 23 0 4 687 508 226 32 8 chr11 13376253 13376402 -108467454 - Lx7 LINE L1 0 7696 7565 4 687 210 217 0 0 chr11 13376620 13376689 -108467167 + A-rich Low_complexity Low_complexity 1 69 0 4 687 1784 185 67 99 chr11 13376729 13376881 -108466975 - L1_Mur3 LINE L1 -2340 3540 3374 4 687 189 0 0 0 chr11 13376881 13376902 -108466954 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 687 1784 185 67 99 chr11 13376902 13377374 -108466482 - L1_Mur3 LINE L1 -2507 3373 2937 4 687 563 312 29 33 chr11 13377374 13377649 -108466207 + RLTR15 LTR ERVK 1 274 -85 4 687 246 32 0 0 chr11 13377772 13377803 -108466053 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 687 1660 84 44 70 chr11 13377826 13378096 -108465760 + L1_Mus2 LINE L1 6304 6566 0 4 687 485 314 12 0 chr11 13378900 13379072 -108464784 + MYSERV-int LTR ERVK 4852 5025 -1525 4 687 232 333 0 0 chr11 13379073 13379139 -108464717 + RMER4B LTR ERVK 372 437 -148 4 687 454 256 102 53 chr11 13379176 13379364 -108464492 + RMER4A LTR ERVK 251 554 -31 4 687 2314 210 73 16 chr11 13379367 13380040 -108463816 + MYSERV6-int LTR ERVK 7770 8480 -479 4 687 1834 178 45 55 chr11 13380076 13380480 -108463376 + MYSERV6-int LTR ERVK 8560 8959 0 4 687 654 312 24 34 chr11 13380480 13380775 -108463081 + RLTR15 LTR ERVK 1 292 -67 4 687 1283 242 18 61 chr11 13380829 13381274 -108462582 - L1_Mur3 LINE L1 -2934 2946 2521 4 687 1834 212 13 24 chr11 13381284 13381499 -108462357 - ORR1C2 LTR MaLR 0 384 173 4 687 1174 60 12 12 chr11 13381499 13381667 -108462189 + (GGGAGA)n Simple_repeat Simple_repeat 2 169 0 4 687 1834 212 13 24 chr11 13381667 13381828 -108462028 - ORR1C2 LTR MaLR -212 172 12 4 687 4498 228 41 22 chr11 13381839 13383686 -108460170 - L1_Mur3 LINE L1 -3365 2515 629 4 687 21 0 0 0 chr11 13384038 13384059 -108459797 + AT_rich Low_complexity Low_complexity 1 21 0 4 687 303 154 0 0 chr11 13384344 13384409 -108459447 + GA-rich Low_complexity Low_complexity 2 66 0 4 687 2449 235 75 7 chr11 13384485 13385072 -108458784 + Lx9 LINE L1 6604 7230 -414 4 687 467 267 87 0 chr11 13385088 13385238 -108458618 + Lx9 LINE L1 7303 7465 -179 4 687 372 43 0 0 chr11 13385241 13385287 -108458569 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 687 441 0 0 0 chr11 13385287 13385335 -108458521 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 687 297 209 35 11 chr11 13385341 13385428 -108458428 + Lx9 LINE L1 7555 7643 -1 4 687 553 362 69 60 chr11 13385967 13386302 -108457554 - RMER15 LTR ERVL 0 575 238 4 687 243 264 41 14 chr11 13386688 13386761 -108457095 + L1MD LINE L1 5501 5575 -2420 4 687 528 306 53 59 chr11 13386846 13387221 -108456635 + L1MC3 LINE L1 5694 6066 -1719 4 687 270 116 0 0 chr11 13387281 13387324 -108456532 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 687 366 360 186 7 chr11 13387404 13387851 -108456005 + L1MC3 LINE L1 6203 6729 -1056 4 687 9123 38 0 2 chr11 13387853 13389629 -108454227 - L1Md_F2 LINE L1 -2 6580 4807 4 687 195 42 0 0 chr11 13390354 13390378 -108453478 + (A)n Simple_repeat Simple_repeat 1 24 0 4 687 477 279 94 6 chr11 13390468 13390648 -108453208 + L1MC3 LINE L1 7305 7500 -285 4 687 27 81 0 0 chr11 13392812 13392874 -108450982 + AT_rich Low_complexity Low_complexity 1 62 0 4 687 1137 64 23 11 chr11 13393704 13393879 -108449977 + (TTTTC)n Simple_repeat Simple_repeat 3 179 0 4 687 221 83 28 0 chr11 13393890 13393926 -108449930 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 4 687 1383 156 49 2 chr11 13393938 13394196 -108449660 - L1_Mm LINE L1 -420 5820 5529 4 687 3449 166 7 58 chr11 13394209 13394301 -108449555 + Lx LINE L1 5215 5306 -577 4 687 3068 76 2 2 chr11 13394301 13394697 -108449159 - MTA_Mm LTR MaLR 0 396 1 4 687 6849 129 16 24 chr11 13394697 13396074 -108447782 + Lx LINE L1 5307 6652 -2 4 687 225 0 0 0 chr11 13397337 13397362 -108446494 + (CCA)n Simple_repeat Simple_repeat 2 26 0 4 687 327 311 30 0 chr11 13397622 13397754 -108446102 + MER2 DNA MER2_type 115 250 -95 4 687 202 243 13 51 chr11 13397960 13398038 -108445818 + (CAGAGA)n Simple_repeat Simple_repeat 3 77 0 4 687 241 255 106 75 chr11 13399561 13399722 -108444134 + RMER12B LTR ERVK 581 746 -658 4 687 292 225 0 14 chr11 13399908 13399980 -108443876 + CT-rich Low_complexity Low_complexity 2 72 0 4 687 261 0 0 0 chr11 13401024 13401053 -108442803 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 687 270 116 0 0 chr11 13401075 13401118 -108442738 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 4 687 1087 268 62 28 chr11 13401132 13401556 -108442300 - MT2B LTR ERVL -92 509 3 4 687 225 293 83 24 chr11 13402158 13402242 -108441614 - MTE2b LTR MaLR -4 375 287 4 687 345 215 33 8 chr11 13402331 13402453 -108441403 + GA-rich Low_complexity Low_complexity 1 125 0 4 687 823 98 0 0 chr11 13402778 13402890 -108440966 - L1_Mur1 LINE L1 -3338 2548 2437 4 687 870 143 65 0 chr11 13402886 13403040 -108440816 + Lx3_Mus LINE L1 6824 6987 -22 4 687 211 301 41 0 chr11 13403466 13403539 -108440317 + ID_B1 SINE B4 76 151 -73 4 687 299 239 136 0 chr11 13403479 13403567 -108440289 + PB1D10 SINE Alu 10 109 -8 4 687 466 218 93 5 chr11 13403831 13404033 -108439823 - Lx8 LINE L1 -648 6825 6573 4 687 403 303 55 21 chr11 13404242 13404387 -108439469 + RSINE1 SINE B4 2 151 -14 4 687 953 321 81 6 chr11 13404606 13404954 -108438902 + MTE2a LTR MaLR 4 377 -2 4 687 22 0 0 0 chr11 13405191 13405213 -108438643 + AT_rich Low_complexity Low_complexity 1 22 0 4 687 32230 105 24 31 chr11 13405754 13412161 -108431695 - L1Md_F2 LINE L1 0 6582 214 4 687 3299 153 40 4 chr11 13412161 13412718 -108431138 - L1Md_F LINE L1 -5660 859 283 4 687 571 342 43 0 chr11 13412931 13413118 -108430738 - MTD-int LTR MaLR -364 894 700 4 687 1911 233 72 49 chr11 13413116 13413645 -108430211 - MTD-int LTR MaLR -717 541 1 4 687 1191 236 113 0 chr11 13413651 13413944 -108429912 - MTD LTR MaLR -10 409 84 4 687 204 23 0 104 chr11 13413944 13413992 -108429864 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 4 687 1092 83 7 0 chr11 13413992 13414136 -108429720 - B1_Mm SINE Alu 0 147 3 5 687 246 273 53 74 chr11 13414141 13414236 -108429620 - MTD LTR MaLR -327 94 2 4 687 387 0 0 0 chr11 13414976 13415019 -108428837 + (ATTTG)n Simple_repeat Simple_repeat 3 45 0 5 687 671 187 36 29 chr11 13415019 13415148 -108428708 - B1_Mur3 SINE Alu -10 139 7 5 687 240 35 0 0 chr11 13415580 13415609 -108428247 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 687 258 274 39 19 chr11 13416160 13416264 -108427592 - L1M4 LINE L1 -833 5313 5208 5 687 28 86 0 0 chr11 13416275 13416345 -108427511 + AT_rich Low_complexity Low_complexity 1 70 0 5 687 248 304 51 0 chr11 13417649 13417728 -108426128 + L1M4b LINE L1 375 457 -6877 5 687 2585 187 79 7 chr11 13417774 13418329 -108425527 - Lx2B LINE L1 -721 6279 5685 5 687 2735 237 35 11 chr11 13418329 13418900 -108424956 + Lx2B LINE L1 6289 6861 -139 5 687 189 0 0 0 chr11 13418900 13418921 -108424935 + (AGGTG)n Simple_repeat Simple_repeat 2 22 0 5 687 2735 237 35 11 chr11 13418921 13418984 -108424872 + Lx2B LINE L1 6862 6938 -62 5 687 5173 132 8 70 chr11 13419289 13420242 -108423614 + RLTR13D6 LTR ERVK 1 894 -8 5 687 1456 265 71 13 chr11 13420777 13421171 -108422685 - MTD LTR MaLR 0 419 3 5 687 260 83 21 0 chr11 13421176 13421224 -108422632 + (CAAAAA)n Simple_repeat Simple_repeat 5 53 0 5 687 525 16 0 0 chr11 13421775 13421837 -108422019 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 687 1124 122 44 5 chr11 13421910 13422116 -108421740 + L1_Mus4 LINE L1 6421 6634 -2 5 687 255 316 66 13 chr11 13422280 13422431 -108421425 - Charlie1a DNA MER1_type -877 578 420 5 687 1130 253 66 33 chr11 13424738 13425040 -108418816 + ORR1D1 LTR MaLR 3 314 -60 5 687 21 71 0 0 chr11 13425216 13425258 -108418598 + AT_rich Low_complexity Low_complexity 1 42 0 5 687 627 274 106 21 chr11 13425886 13426120 -108417736 + MTD LTR MaLR 119 364 -36 5 687 9312 115 5 0 chr11 13426840 13428270 -108415586 - L1_Mm LINE L1 -1610 4273 2837 5 687 8427 101 8 4 chr11 13428268 13430219 -108413637 + L1_Mus1 LINE L1 4611 6566 -1 5 687 964 140 0 0 chr11 13430785 13430928 -108412928 - Lx2 LINE L1 -1267 5730 5588 5 687 1206 88 29 0 chr11 13430937 13431108 -108412748 + Lx LINE L1 5841 6016 -638 5 687 626 229 158 11 chr11 13431115 13431305 -108412551 + L1VL1 LINE L1 82 299 -6123 5 687 422 245 0 0 chr11 13431296 13431390 -108412466 + L1Md_F3 LINE L1 332 425 -6191 5 687 281 217 0 55 chr11 13431388 13431461 -108412395 + L1Md_F3 LINE L1 587 655 -5961 5 687 34452 48 8 6 chr11 13431429 13436091 -108407765 + L1Md_F3 LINE L1 928 5586 -297 5 687 8124 42 6 0 chr11 13436092 13437082 -108406774 + L1Md_F3 LINE L1 5588 6583 -1 5 687 6070 93 11 5 chr11 13437082 13437950 -108405906 - ORR1A1-int LTR MaLR -224 874 1 5 687 2333 80 64 15 chr11 13437952 13438282 -108405574 - ORR1A1 LTR MaLR 0 346 1 5 687 369 302 62 0 chr11 13438806 13438935 -108404921 + B1F SINE Alu 13 149 0 5 687 956 167 17 40 chr11 13439638 13439699 -108404157 - MTC LTR MaLR 0 421 365 5 687 1802 209 42 3 chr11 13439699 13440078 -108403778 - ORR1B1 LTR MaLR 0 394 1 5 687 956 176 359 52 chr11 13440078 13440351 -108403505 - MTC LTR MaLR -57 364 5 5 687 195 42 0 0 chr11 13440903 13440927 -108402929 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 687 4040 113 8 2 chr11 13440932 13441528 -108402328 - L1_Mus3 LINE L1 -7 6631 6032 5 687 24 53 0 0 chr11 13441910 13441948 -108401908 + AT_rich Low_complexity Low_complexity 1 38 0 5 687 29 0 0 0 chr11 13441975 13442004 -108401852 + AT_rich Low_complexity Low_complexity 1 29 0 5 687 926 141 0 6 chr11 13443408 13443579 -108400277 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 5 687 426 248 138 59 chr11 13443452 13443705 -108400151 + L1MC4 LINE L1 957 1229 -4986 5 687 882 168 14 20 chr11 13443601 13443962 -108399894 + GA-rich Low_complexity Low_complexity 1 358 0 5 687 306 0 0 0 chr11 13443963 13443997 -108399859 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 5 687 900 299 81 18 chr11 13444898 13445376 -108398480 + Lx5 LINE L1 5973 6729 -731 5 687 807 142 0 0 chr11 13445396 13445530 -108398326 + (GAAAA)n Simple_repeat Simple_repeat 2 135 0 5 687 1566 321 20 37 chr11 13445552 13446153 -108397703 + Lx5 LINE L1 6455 7045 -5 5 687 36677 11 3 8 chr11 13446241 13452058 -108391798 + L1Md_A LINE L1 1 5586 -297 5 687 8764 19 0 0 chr11 13452058 13453054 -108390802 + L1Md_A LINE L1 5587 6582 0 5 687 280 317 39 88 chr11 13453371 13453575 -108390281 - MTEa LTR MaLR 0 379 186 5 687 306 0 0 0 chr11 13454325 13454359 -108389497 + (T)n Simple_repeat Simple_repeat 1 34 0 5 687 1138 101 0 0 chr11 13454359 13454507 -108389349 - B1_Mus1 SINE Alu 0 148 1 5 687 444 19 0 0 chr11 13454570 13454623 -108389233 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 687 219 88 0 0 chr11 13454624 13454658 -108389198 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 687 318 357 9 9 chr11 13454680 13454793 -108389063 - MER2 DNA MER2_type -35 310 198 5 687 753 325 5 5 chr11 13454807 13454999 -108388857 + B3 SINE B2 24 215 -1 5 687 399 285 99 35 chr11 13455026 13455197 -108388659 - MER2 DNA MER2_type -157 188 7 5 687 195 195 24 0 chr11 13456763 13456804 -108387052 - L2 LINE L2 -1423 1996 1955 5 687 5593 126 28 2 chr11 13457034 13457954 -108385902 - Lx LINE L1 -1 6653 5710 5 687 4860 175 3 9 chr11 13457955 13458888 -108384968 + Lx LINE L1 4802 5729 -154 5 687 2499 281 99 39 chr11 13459513 13460551 -108383305 - Lx6 LINE L1 -27 7433 6091 5 687 817 189 144 16 chr11 13460631 13460825 -108383031 + URR1A DNA MER1_type 1 219 -7 5 687 474 49 0 0 chr11 13460939 13461000 -108382856 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 687 4604 182 11 26 chr11 13461037 13461743 -108382113 + Lx2B LINE L1 6062 6762 -238 5 687 441 0 0 0 chr11 13461743 13461792 -108382064 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 687 513 0 0 0 chr11 13461795 13461852 -108382004 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 687 4604 182 11 26 chr11 13461852 13462090 -108381766 + Lx2B LINE L1 6763 6992 -8 5 687 396 59 0 0 chr11 13462935 13462986 -108380870 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 687 575 165 100 9 chr11 13463019 13463129 -108380727 + MTC LTR MaLR 1 120 -301 5 687 2334 102 6 3 chr11 13463135 13463478 -108380378 - L1_Mus4 LINE L1 -4 6632 6289 5 687 3118 99 0 2 chr11 13463478 13463918 -108379938 + L1_Mus4 LINE L1 5795 6234 -402 5 687 990 243 179 3 chr11 13463918 13464215 -108379641 + MTD LTR MaLR 63 411 -8 5 687 2666 77 20 0 chr11 13464367 13464716 -108379140 + L1_Mus1 LINE L1 6211 6566 -1 5 687 266 321 26 73 chr11 13465255 13465406 -108378450 + L2a LINE L2 3265 3408 -18 5 687 218 213 0 0 chr11 13466127 13466174 -108377682 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 5 687 233 346 52 44 chr11 13466316 13466452 -108377404 + MLT1F2 LTR MaLR 7 143 -417 5 687 367 149 0 56 chr11 13466568 13466639 -108377217 - URR1B DNA MER1_type -1 224 158 5 687 366 333 101 0 chr11 13466599 13466728 -108377128 - MTC LTR MaLR -82 339 198 5 687 23257 153 27 12 chr11 13466770 13472853 -108371003 - Lx3C LINE L1 -11 6965 794 5 687 21 57 0 0 chr11 13473162 13473197 -108370659 + AT_rich Low_complexity Low_complexity 1 35 0 5 687 382 299 32 41 chr11 13473533 13473753 -108370103 - L1MA9 LINE L1 -451 5861 5644 5 687 1007 149 0 0 chr11 13473805 13473953 -108369903 - B1_Mus1 SINE Alu 0 148 1 5 687 7337 62 6 8 chr11 13475448 13476801 -108367055 - L1Md_F2 LINE L1 -3 6579 5230 5 687 1620 244 95 51 chr11 13476999 13477683 -108366173 + RMER6D LTR ERVK 3 716 -4 5 687 306 253 12 12 chr11 13477971 13478055 -108365801 + RMER15 LTR ERVL 422 505 -70 5 687 1711 159 14 3 chr11 13478075 13478359 -108365497 + ORR1A4 LTR MaLR 1 287 -42 5 687 4429 139 67 22 chr11 13478363 13479356 -108364500 + L1VL2 LINE L1 99 1144 -2471 5 687 9951 185 29 16 chr11 13479350 13480470 -108363386 + L1_Mm LINE L1 3595 4736 -1147 5 687 270 0 0 0 chr11 13480470 13480500 -108363356 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 687 9951 185 29 16 chr11 13480500 13481562 -108362294 + L1_Mm LINE L1 4737 5806 -77 5 687 3437 72 0 30 chr11 13481575 13482047 -108361809 - L1Md_F2 LINE L1 -1 6581 6124 5 687 5004 147 17 8 chr11 13482045 13482882 -108360974 + Lx LINE L1 5804 6647 -7 5 687 5247 145 2 26 chr11 13482876 13483770 -108360086 + Lx LINE L1 5782 6654 0 5 687 322 128 0 0 chr11 13483782 13483829 -108360027 + ORR1A4 LTR MaLR 292 338 -8 5 687 201 147 0 0 chr11 13484381 13484415 -108359441 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 5 687 22 0 0 0 chr11 13485169 13485191 -108358665 + AT_rich Low_complexity Low_complexity 1 22 0 5 687 284 205 34 51 chr11 13485927 13485941 -108357915 + (TA)n Simple_repeat Simple_repeat 1 14 0 5 687 3052 52 18 5 chr11 13485941 13486332 -108357524 - MTA_Mm LTR MaLR 0 396 1 5 687 8216 64 25 0 chr11 13486332 13487403 -108356453 - MTA_Mm-int LTR MaLR 0 1098 1 5 687 3194 56 5 0 chr11 13487403 13487797 -108356059 - MTA_Mm LTR MaLR 0 396 1 5 687 284 205 34 51 chr11 13487797 13487898 -108355958 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 687 1183 281 24 35 chr11 13488674 13489098 -108354758 + MTD LTR MaLR 1 419 0 5 687 302 320 98 39 chr11 13492071 13492224 -108351632 - HAL1-3A_ME LINE L1 -415 2443 2282 5 687 419 216 41 18 chr11 13492245 13492415 -108351441 + CT-rich Low_complexity Low_complexity 2 175 0 5 687 1557 182 40 14 chr11 13492524 13492853 -108351003 - RMER17D2 LTR ERVK 0 809 504 5 687 4558 77 31 1 chr11 13492853 13493502 -108350354 - L1Md_F2 LINE L1 -186 5697 5030 5 687 5880 90 27 12 chr11 13493502 13494354 -108349502 + L1Md_F2 LINE L1 5714 6578 -4 5 687 970 107 0 0 chr11 13494478 13494627 -108349229 - L1_Mm LINE L1 -711 5172 5024 5 687 305 93 0 0 chr11 13494621 13494664 -108349192 + L1_Mm LINE L1 5714 5756 -127 5 687 288 30 59 29 chr11 13494674 13494742 -108349114 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 5 687 1127 137 104 0 chr11 13494745 13494994 -108348862 - RMER17A2 LTR ERVK -331 575 301 5 687 759 131 23 0 chr11 13494969 13495099 -108348757 - RMER17A2 LTR ERVK -676 133 1 5 687 618 176 0 0 chr11 13495435 13495554 -108348302 + T-rich Low_complexity Low_complexity 1 119 0 5 687 840 88 0 0 chr11 13495573 13495709 -108348147 + (TTC)n Simple_repeat Simple_repeat 2 137 0 5 687 1844 139 43 43 chr11 13495711 13496079 -108347777 - Lx LINE L1 -17 6637 6270 5 687 204 40 0 0 chr11 13496970 13496995 -108346861 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 687 227 31 31 0 chr11 13497616 13497648 -108346208 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 687 1103 62 14 0 chr11 13497650 13497794 -108346062 - B1_Mus2 SINE Alu 0 147 2 5 687 325 329 23 52 chr11 13498060 13498233 -108345623 - L2 LINE L2 -673 2746 2579 5 687 278 395 49 22 chr11 13498908 13499175 -108344681 - L2 LINE L2 -1169 2250 1977 5 687 2127 240 80 31 chr11 13499396 13499985 -108343871 + RMER19A LTR ERVK 1 618 -119 6 85 1324 104 10 5 chr11 13500236 13500438 -108343418 - L1_Mus3 LINE L1 -4 6634 6432 1 688 621 177 63 0 chr11 13500441 13500563 -108343293 + RMER19A LTR ERVK 624 852 -50 2 688 233 180 0 90 chr11 13501363 13501430 -108342426 + MTE2a LTR MaLR 275 335 -44 3 688 3285 140 32 14 chr11 13501482 13502074 -108341782 - L1_Mur2 LINE L1 -278 5599 4997 4 688 291 28 0 0 chr11 13502130 13502166 -108341690 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 688 186 43 0 0 chr11 13502166 13502188 -108341668 + (GA)n Simple_repeat Simple_repeat 1 23 0 6 688 318 50 0 0 chr11 13502410 13502450 -108341406 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 688 261 0 0 0 chr11 13503561 13503590 -108340266 + (TC)n Simple_repeat Simple_repeat 1 29 0 8 688 261 0 0 0 chr11 13503590 13503618 -108340238 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 688 255 293 40 79 chr11 13504462 13504588 -108339268 - MIR SINE MIR -31 231 111 1 688 833 256 73 75 chr11 13504657 13505111 -108338745 - RMER2 LTR ERV1 -12 555 1 1 688 895 338 11 21 chr11 13505245 13505532 -108338324 + B4A SINE B4 8 291 -1 1 688 203 61 30 0 chr11 13505547 13505580 -108338276 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 688 745 145 17 23 chr11 13505616 13505792 -108338064 + GA-rich Low_complexity Low_complexity 5 179 0 1 688 245 330 19 25 chr11 13506717 13506869 -108336987 + PB1D10 SINE Alu 1 147 -2 1 688 522 114 0 0 chr11 13507454 13507533 -108336323 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 1 688 654 344 44 13 chr11 13507783 13508101 -108335755 - Lx8 LINE L1 -33 7440 7113 1 688 787 319 77 54 chr11 13508252 13508809 -108335047 - Lx8 LINE L1 -371 7102 6533 1 688 390 295 95 0 chr11 13508813 13508918 -108334938 + Lx8 LINE L1 7041 7155 -318 1 688 24 0 0 0 chr11 13509094 13509118 -108334738 + AT_rich Low_complexity Low_complexity 1 24 0 1 688 250 181 116 35 chr11 13509541 13509627 -108334229 - B3 SINE B2 -1 215 123 1 688 357 43 0 0 chr11 13509744 13509791 -108334065 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2 688 376 355 0 8 chr11 13509833 13509955 -108333901 - B3A SINE B2 -77 121 1 2 688 192 344 61 76 chr11 13510024 13510156 -108333700 - L2a LINE L2 -23 3403 3274 2 688 1727 191 29 37 chr11 13510728 13511076 -108332780 - ORR1B1 LTR MaLR -9 385 41 2 688 333 0 0 0 chr11 13511194 13511231 -108332625 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 688 234 0 0 0 chr11 13512496 13512522 -108331334 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 688 180 0 0 0 chr11 13512568 13512588 -108331268 + (T)n Simple_repeat Simple_repeat 1 20 0 2 688 216 0 0 0 chr11 13513696 13513720 -108330136 + (T)n Simple_repeat Simple_repeat 1 24 0 2 688 2219 124 19 5 chr11 13513730 13514102 -108329754 - L1_Mus3 LINE L1 -1 6637 6261 2 688 724 94 0 0 chr11 13514102 13514198 -108329658 + L1_Mus3 LINE L1 6154 6249 -389 2 688 924 275 22 9 chr11 13514501 13514732 -108329124 - MTD LTR MaLR -80 339 106 2 688 3244 153 2 0 chr11 13514732 13515248 -108328608 + Lx2A1 LINE L1 6492 7008 0 3 688 35301 37 1 1 chr11 13515252 13521729 -108322127 + L1Md_T LINE L1 1 5589 -297 3 688 8993 5 0 0 chr11 13521729 13522749 -108321107 + L1Md_T LINE L1 5590 6585 0 3 688 425 302 8 0 chr11 13522749 13522868 -108320988 - MTD LTR MaLR -299 120 1 2 688 440 77 0 15 chr11 13522945 13523011 -108320845 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 3 688 1395 265 44 33 chr11 13523100 13523467 -108320389 + MTE2b LTR MaLR 9 379 0 3 688 727 303 74 0 chr11 13523883 13524154 -108319702 + RMER15-int LTR ERVL 854 1144 -3855 3 688 337 310 127 0 chr11 13524230 13524372 -108319484 + RMER15-int LTR ERVL 1251 1410 -3589 3 688 1155 285 109 65 chr11 13524952 13525723 -108318133 + RMER15-int LTR ERVL 4188 4992 -7 3 688 269 349 78 106 chr11 13525850 13526162 -108317694 + RMER15 LTR ERVL 273 575 0 3 688 593 27 13 0 chr11 13527496 13527571 -108316285 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 688 24 32 0 0 chr11 13527623 13527654 -108316202 + AT_rich Low_complexity Low_complexity 1 31 0 3 688 22 0 0 0 chr11 13528482 13528504 -108315352 + AT_rich Low_complexity Low_complexity 1 22 0 3 688 234 0 0 0 chr11 13529311 13529337 -108314519 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 688 465 71 0 0 chr11 13529561 13529631 -108314225 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 688 455 314 49 8 chr11 13529678 13529925 -108313931 + L1MA6 LINE L1 6005 6261 -39 4 688 225 0 0 0 chr11 13530489 13530514 -108313342 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 688 353 285 109 27 chr11 13530684 13530868 -108312988 - MER2 DNA MER2_type -46 299 101 4 688 231 179 53 18 chr11 13531012 13531069 -108312787 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 4 688 214 377 39 0 chr11 13531072 13531149 -108312707 - RSINE1 SINE B4 0 165 86 4 688 360 0 0 0 chr11 13531658 13531698 -108312158 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 688 711 275 39 0 chr11 13531700 13531882 -108311974 + Lx9 LINE L1 6341 6529 -1115 4 688 1793 227 93 0 chr11 13531882 13532279 -108311577 + Lx9 LINE L1 7032 7465 -179 4 688 519 17 0 0 chr11 13532323 13532383 -108311473 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 688 357 24 0 0 chr11 13532383 13532424 -108311432 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 688 203 152 0 0 chr11 13532450 13532483 -108311373 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 688 357 258 162 69 chr11 13532696 13532900 -108310956 + ID_B1 SINE B4 2 224 0 5 688 29 0 0 0 chr11 13532951 13532980 -108310876 + AT_rich Low_complexity Low_complexity 1 29 0 5 688 736 332 79 17 chr11 13533226 13533795 -108310061 - MER82 DNA MER2_type -8 645 6 5 688 28 0 0 0 chr11 13534025 13534053 -108309803 + AT_rich Low_complexity Low_complexity 1 28 0 5 688 12143 177 18 17 chr11 13534112 13536860 -108306996 - Lx3C LINE L1 -732 6244 3504 5 688 3079 164 37 7 chr11 13536859 13537459 -108306397 - MusHAL1 LINE L1 -1118 1594 977 5 688 28 48 0 0 chr11 13537526 13537568 -108306288 + AT_rich Low_complexity Low_complexity 1 42 0 5 688 21 0 0 0 chr11 13537956 13537977 -108305879 + AT_rich Low_complexity Low_complexity 1 21 0 5 688 1923 178 20 76 chr11 13538273 13538680 -108305176 - ORR1B1 LTR MaLR -9 385 2 5 688 304 376 5 14 chr11 13539603 13539816 -108304040 - L1M5 LINE L1 -1383 4763 4553 5 688 23 0 0 0 chr11 13540789 13540812 -108303044 + AT_rich Low_complexity Low_complexity 1 23 0 6 688 7737 74 0 1 chr11 13540860 13542038 -108301818 - L1_Mus1 LINE L1 0 6567 5391 6 688 4555 101 30 4 chr11 13542035 13542713 -108301143 + L1_Mus1 LINE L1 4721 5415 -468 6 688 32 67 0 0 chr11 13542764 13542824 -108301032 + AT_rich Low_complexity Low_complexity 1 60 0 6 688 21 82 0 0 chr11 13542889 13542938 -108300918 + AT_rich Low_complexity Low_complexity 1 49 0 6 688 32 0 0 0 chr11 13543142 13543174 -108300682 + AT_rich Low_complexity Low_complexity 1 32 0 6 688 24 32 0 0 chr11 13543231 13543262 -108300594 + AT_rich Low_complexity Low_complexity 1 31 0 6 688 360 349 116 32 chr11 13544493 13544777 -108299079 + L1MD3 LINE L1 7378 7685 -310 6 688 681 202 8 0 chr11 13544880 13544999 -108298857 + B1_Mus2 SINE Alu 4 123 -24 6 688 389 20 20 0 chr11 13545004 13545054 -108298802 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 688 1315 237 81 14 chr11 13545361 13545721 -108298135 - ORR1C2 LTR MaLR 0 384 1 6 688 333 226 45 142 chr11 13546169 13546303 -108297553 + MT2B LTR ERVL 144 264 -337 7 688 853 74 49 0 chr11 13546203 13546325 -108297531 + B1_Mm SINE Alu 7 134 -13 7 688 315 71 0 0 chr11 13546325 13546367 -108297489 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 7 688 25 31 0 0 chr11 13546723 13546755 -108297101 + AT_rich Low_complexity Low_complexity 1 32 0 7 688 261 135 0 0 chr11 13546961 13547013 -108296843 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 688 219 69 0 0 chr11 13547420 13547449 -108296407 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 688 21 57 0 0 chr11 13547455 13547490 -108296366 + AT_rich Low_complexity Low_complexity 1 35 0 7 688 229 83 53 53 chr11 13547529 13547605 -108296251 + A-rich Low_complexity Low_complexity 5 80 0 7 688 258 331 31 62 chr11 13550158 13550287 -108293569 - MER5B DNA MER1_type 0 178 54 7 688 1918 157 0 59 chr11 13550319 13550657 -108293199 - ORR1A3 LTR MaLR -8 318 1 7 688 23 33 0 0 chr11 13551140 13551170 -108292686 + AT_rich Low_complexity Low_complexity 1 30 0 8 688 216 0 0 0 chr11 13551257 13551281 -108292575 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 8 688 218 290 0 0 chr11 13551504 13551566 -108292290 + B1F SINE Alu 86 147 -2 8 688 270 182 0 0 chr11 13551566 13551632 -108292224 + (CAA)n Simple_repeat Simple_repeat 1 66 0 8 688 241 391 0 0 chr11 13551633 13551702 -108292154 + ID4_ SINE ID 11 79 -4 8 688 456 104 0 0 chr11 13551888 13551955 -108291901 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 8 688 356 272 76 12 chr11 13552193 13552364 -108291492 - L1MD2 LINE L1 -4 6355 6174 8 688 205 186 0 0 chr11 13552538 13552581 -108291275 + T-rich Low_complexity Low_complexity 1 43 0 8 688 333 224 32 0 chr11 13553590 13553697 -108290159 - L1MD2 LINE L1 -246 5996 5887 8 688 347 369 26 10 chr11 13553942 13554143 -108289713 - Lx7 LINE L1 -388 7308 7116 8 688 435 306 115 18 chr11 13554141 13554367 -108289489 + Lx7 LINE L1 6824 7071 -625 8 688 702 216 0 25 chr11 13554390 13554547 -108289309 - RLTR26 LTR ERVK 0 642 490 8 688 2408 193 21 57 chr11 13554529 13555095 -108288761 - RLTR26 LTR ERVK -96 546 1 8 688 807 306 114 13 chr11 13555118 13555591 -108288265 - L1_Mur3 LINE L1 -1910 3970 3450 9 688 26 0 0 0 chr11 13555975 13556001 -108287855 + AT_rich Low_complexity Low_complexity 1 26 0 9 688 219 264 19 19 chr11 13558641 13558695 -108285161 + B4A SINE B4 9 62 -230 9 688 333 0 0 0 chr11 13558786 13558823 -108285033 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 688 2900 63 200 9 chr11 13559552 13559982 -108283874 + RLTR1B LTR ERV1 1 512 0 9 688 368 360 62 38 chr11 13560024 13560344 -108283512 - MER89-int LTR ERV1 -3062 3739 3412 9 688 1185 240 213 29 chr11 13562156 13562606 -108281250 - MT2A LTR ERVL 0 533 1 9 688 242 132 19 0 chr11 13563082 13563135 -108280721 + T-rich Low_complexity Low_complexity 4 57 0 9 688 4030 68 60 6 chr11 13564369 13564900 -108278956 - LTRIS2 LTR ERV1 0 564 5 9 688 879 211 59 5 chr11 13564903 13565122 -108278734 - RLTR1B-int LTR ERV1 -42 5021 4791 9 688 4891 148 138 44 chr11 13565169 13566719 -108277137 - RLTR1B-int LTR ERV1 -1284 2015 860 9 688 1373 141 188 7 chr11 13566722 13567014 -108276842 - IAPLTR4 LTR ERVK 0 345 1 1 688 4064 157 56 9 chr11 13567049 13567745 -108276111 - RMER16-int LTR ERVK -3988 1418 690 1 688 934 142 78 17 chr11 13567731 13567910 -108275946 - RMER16-int LTR ERVK -5075 331 142 1 688 678 79 0 0 chr11 13568260 13568349 -108275507 - RLTR1B-int LTR ERV1 -3006 293 205 9 688 3724 75 62 0 chr11 13568355 13568872 -108274984 + LTRIS2 LTR ERV1 16 564 0 1 688 1531 221 27 25 chr11 13568978 13569344 -108274512 - RMER5 LTR ERV1 0 534 168 1 688 308 277 11 11 chr11 13570447 13570464 -108273392 + L1MEf LINE L1 1974 1990 -4210 1 688 1132 35 7 40 chr11 13570464 13570615 -108273241 + B1_Mus2 SINE Alu 2 147 0 1 688 308 277 11 11 chr11 13570615 13570692 -108273164 + L1MEf LINE L1 1991 2067 -4133 1 688 513 314 57 7 chr11 13570840 13570981 -108272875 - RSINE1 SINE B4 -6 159 12 1 688 1515 218 68 87 chr11 13571624 13572107 -108271749 - RLTR1B LTR ERV1 0 512 2 1 688 23 33 0 0 chr11 13573164 13573194 -108270662 + AT_rich Low_complexity Low_complexity 1 30 0 1 688 227 338 13 26 chr11 13573194 13573270 -108270586 - PB1D10 SINE Alu -21 96 22 1 688 239 365 53 40 chr11 13574900 13575052 -108268804 + MIRb SINE MIR 44 200 -8 1 688 387 0 0 0 chr11 13575294 13575337 -108268519 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 688 292 307 44 0 chr11 13576224 13576296 -108267560 + B1F1 SINE Alu 1 73 -54 1 688 796 265 58 13 chr11 13576296 13576522 -108267334 - Lx6 LINE L1 -107 7353 7118 1 688 3389 235 64 42 chr11 13576517 13577615 -108266241 - Lx6 LINE L1 -741 6719 5724 1 688 387 0 0 0 chr11 13577615 13577658 -108266198 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1 688 711 203 83 0 chr11 13577658 13577791 -108266065 - B1_Mur4 SINE Alu -5 145 2 1 688 8119 173 31 44 chr11 13577793 13579504 -108264352 - Lx6 LINE L1 -134 5746 4058 1 688 3426 157 148 9 chr11 13579800 13580442 -108263414 - RMER19A LTR ERVK -3 734 4 1 688 352 294 61 65 chr11 13580448 13580629 -108263227 - L1_Mur3 LINE L1 -1087 5056 4845 1 688 264 77 0 0 chr11 13580629 13580668 -108263188 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 688 352 304 60 24 chr11 13580668 13580763 -108263093 - L1_Mur3 LINE L1 -1036 4844 4750 1 688 316 21 0 59 chr11 13582433 13582484 -108261372 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 688 2680 191 1 2 chr11 13582494 13583055 -108260801 + L1_Mur2 LINE L1 693 1318 -6394 1 688 385 232 12 12 chr11 13583055 13583138 -108260718 + RLTR22_Mur LTR ERVK 1 83 -1765 1 688 520 42 0 0 chr11 13583140 13583212 -108260644 + L1_Mur2 LINE L1 1375 1446 -4431 1 688 1019 230 223 14 chr11 13583232 13583618 -108260238 + RMER19B LTR ERVK 142 664 -238 1 688 5015 130 73 17 chr11 13583618 13584331 -108259525 + L1_Mur2 LINE L1 2105 2851 -3026 1 688 213 39 0 0 chr11 13584331 13584357 -108259499 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 688 5015 130 73 17 chr11 13584357 13584574 -108259282 + L1_Mur2 LINE L1 2852 3086 -2791 1 688 1049 211 83 92 chr11 13584575 13584889 -108258967 + Lx5 LINE L1 6727 7037 -13 1 688 391 327 148 19 chr11 13585738 13586056 -108257800 - L1MD3 LINE L1 -130 7865 7507 1 688 4586 78 11 0 chr11 13586241 13586854 -108257002 - L1_Mus1 LINE L1 -1 6566 5947 1 688 268 206 43 14 chr11 13588755 13588824 -108255032 - MTD LTR MaLR -2 417 347 1 688 354 23 0 0 chr11 13588833 13588876 -108254980 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 688 1161 294 43 9 chr11 13588879 13589202 -108254654 - MTD LTR MaLR -85 334 1 1 688 1733 222 39 21 chr11 13589521 13589765 -108254091 - RLTR33 LTR ERVK -1 677 440 1 688 225 0 0 0 chr11 13589765 13589790 -108254066 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 688 2025 137 66 5 chr11 13589790 13590159 -108253697 - RLTR33 LTR ERVK -239 439 6 1 688 21 0 0 0 chr11 13590938 13590959 -108252897 + AT_rich Low_complexity Low_complexity 1 21 0 1 688 22 35 0 0 chr11 13591674 13591703 -108252153 + AT_rich Low_complexity Low_complexity 1 29 0 1 688 486 0 0 0 chr11 13591819 13591873 -108251983 + (A)n Simple_repeat Simple_repeat 1 54 0 1 688 415 206 9 47 chr11 13592281 13592388 -108251468 - Lx9 LINE L1 -7 7637 7535 1 688 7345 89 1 1 chr11 13592406 13593547 -108250309 + L1_Mus1 LINE L1 5426 6567 0 1 688 225 0 0 0 chr11 13593560 13593585 -108250271 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 688 24 0 0 0 chr11 13593686 13593710 -108250146 + AT_rich Low_complexity Low_complexity 1 24 0 1 688 217 261 0 0 chr11 13594330 13594376 -108249480 - MER5B DNA MER1_type -130 48 3 1 688 655 313 83 11 chr11 13594655 13594933 -108248923 - MER2 DNA MER2_type -6 339 42 1 688 423 38 0 0 chr11 13595441 13595494 -108248362 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 688 27 100 0 0 chr11 13595613 13595703 -108248153 + AT_rich Low_complexity Low_complexity 1 90 0 1 688 6370 83 15 0 chr11 13596802 13597678 -108246178 - L1Md_F2 LINE L1 -639 5244 4356 1 688 2694 77 0 0 chr11 13597677 13598028 -108245828 + L1Md_F2 LINE L1 5235 5585 -298 1 688 7383 70 7 13 chr11 13598029 13599030 -108244826 + L1Md_F2 LINE L1 5587 6581 -1 1 688 21 0 0 0 chr11 13599067 13599088 -108244768 + AT_rich Low_complexity Low_complexity 1 21 0 1 688 5145 70 0 0 chr11 13599120 13599777 -108244079 - L1Md_F2 LINE L1 -80 5803 5147 1 688 5731 62 4 0 chr11 13599777 13600519 -108243337 + L1Md_F2 LINE L1 5838 6582 0 1 688 309 202 78 31 chr11 13601963 13602091 -108241765 + L1MC LINE L1 5334 5467 -2415 1 688 207 0 0 0 chr11 13603320 13603343 -108240513 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 688 3318 126 8 26 chr11 13603343 13603879 -108239977 - Lx3A LINE L1 -12 6969 6444 1 688 763 105 16 0 chr11 13603920 13604044 -108239812 + (TC)n Simple_repeat Simple_repeat 2 127 0 1 688 760 131 8 0 chr11 13604044 13604166 -108239690 - Lx3_Mus LINE L1 -1104 5905 5783 1 688 7351 121 24 3 chr11 13604161 13605671 -108238185 - L1_Mus4 LINE L1 -5 6631 5077 1 688 9338 108 14 52 chr11 13605674 13607223 -108236633 - Lx3_Mus LINE L1 -98 5788 4299 1 688 411 280 153 44 chr11 13607393 13607576 -108236280 + B3A SINE B2 2 204 -12 1 688 278 325 16 0 chr11 13607776 13607899 -108235957 - L1M2 LINE L1 -667 5633 5509 1 688 1648 286 69 60 chr11 13607977 13609063 -108234793 - L1_Mur3 LINE L1 -1275 4605 3510 1 688 244 295 0 13 chr11 13609510 13609589 -108234267 + CT-rich Low_complexity Low_complexity 2 79 0 1 688 1020 90 0 0 chr11 13611366 13611499 -108232357 + B1_Mus1 SINE Alu 2 134 -14 1 688 243 0 0 0 chr11 13611502 13611529 -108232327 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 688 5218 178 51 50 chr11 13611732 13612355 -108231501 + RLTR13D3 LTR ERVK 1 660 -454 1 688 2706 44 0 149 chr11 13612355 13612784 -108231072 - RLTR10B2 LTR ERVK 0 365 1 1 688 5218 178 51 50 chr11 13612784 13613273 -108230583 + RLTR13D3 LTR ERVK 661 1114 0 1 688 1284 181 0 0 chr11 13613275 13613496 -108230360 - Lx2 LINE L1 0 6997 6777 1 688 6468 158 31 16 chr11 13613497 13615525 -108228331 - Lx2 LINE L1 -353 6644 4573 1 688 278 320 68 30 chr11 13615535 13615667 -108228189 - MLT1D LTR MaLR -29 476 340 1 688 32 0 0 0 chr11 13616045 13616077 -108227779 + AT_rich Low_complexity Low_complexity 1 32 0 1 688 27765 128 11 5 chr11 13616077 13621556 -108222300 - L1_Mus2 LINE L1 -2 6564 1062 1 688 552 68 0 0 chr11 13621556 13621629 -108222227 + (TTC)n Simple_repeat Simple_repeat 2 74 0 1 688 5401 124 44 42 chr11 13621629 13622264 -108221592 - L1_Mus2 LINE L1 -5577 1061 410 1 688 348 43 0 0 chr11 13622362 13622408 -108221448 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 688 324 0 0 0 chr11 13623055 13623091 -108220765 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 688 1048 309 61 41 chr11 13623396 13623735 -108220121 - MTE2a LTR MaLR -14 405 38 1 688 1046 204 14 0 chr11 13623735 13623955 -108219901 + URR1A DNA MER1_type 1 223 -3 1 688 624 333 97 44 chr11 13623955 13623998 -108219858 - MTE2a LTR MaLR -369 50 5 1 688 563 92 0 11 chr11 13625215 13625303 -108218553 + (TA)n Simple_repeat Simple_repeat 2 88 0 1 688 1183 279 128 107 chr11 13625737 13626347 -108217509 + RMER20B LTR ERVK 3 625 -2 1 688 237 304 46 20 chr11 13626365 13626516 -108217340 - MER2 DNA MER2_type -104 241 87 1 688 8385 27 0 0 chr11 13627738 13628988 -108214868 - L1Md_T LINE L1 -1 6581 5332 1 688 316 371 12 36 chr11 13629359 13629524 -108214332 - RSINE1 SINE B4 -1 164 4 1 688 380 192 101 13 chr11 13629528 13629607 -108214249 - B4 SINE B4 -200 92 7 1 688 280 406 25 25 chr11 13630476 13630673 -108213183 + LTR16C LTR ERVL 286 482 -7 1 688 364 361 84 50 chr11 13631030 13631292 -108212564 - ORR1E LTR MaLR 0 359 89 1 10 1357 311 65 16 chr11 13631290 13631783 -108212073 + MTE-int LTR MaLR 1035 1551 -29 1 689 11956 154 28 38 chr11 13632087 13632696 -108211160 - L1_Mur1 LINE L1 -1412 4474 3861 1 689 1021 101 7 0 chr11 13632696 13632835 -108211021 - B1_Mus1 SINE Alu 0 148 9 1 689 522 235 46 111 chr11 13632698 13632851 -108211005 - B4 SINE B4 -69 223 81 1 689 11956 154 28 38 chr11 13632851 13633909 -108209947 - L1_Mur1 LINE L1 -1412 3860 2791 1 689 186 43 0 0 chr11 13633909 13633932 -108209924 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 689 11956 114 30 6 chr11 13633932 13635116 -108208740 - L1_Mur1 LINE L1 -1124 2790 1581 1 689 3930 37 0 24 chr11 13635285 13635806 -108208050 - L1Md_F3 LINE L1 0 6584 6090 1 689 26 30 0 0 chr11 13636278 13636311 -108207545 + AT_rich Low_complexity Low_complexity 1 33 0 1 689 241 286 0 0 chr11 13636631 13636694 -108207162 - Lx7 LINE L1 -382 7314 7252 1 689 875 268 91 10 chr11 13636715 13636995 -108206861 + Lx7 LINE L1 6763 7059 -637 1 689 297 0 0 0 chr11 13636995 13637028 -108206828 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 689 875 268 91 10 chr11 13637028 13637056 -108206800 + Lx7 LINE L1 7060 7095 -601 1 689 207 100 0 0 chr11 13637132 13637162 -108206694 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 1 689 380 336 183 0 chr11 13637387 13637649 -108206207 + MLT1A0 LTR MaLR 11 320 -45 1 689 474 18 0 0 chr11 13637810 13637865 -108205991 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 689 333 0 0 0 chr11 13637865 13637901 -108205955 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 689 261 0 0 0 chr11 13637991 13638020 -108205836 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 1 689 291 28 0 0 chr11 13638464 13638500 -108205356 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 689 282 73 0 0 chr11 13638531 13638572 -108205284 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 689 372 311 7 13 chr11 13638584 13638734 -108205122 + GA-rich Low_complexity Low_complexity 2 150 0 1 689 25 0 0 0 chr11 13638853 13638878 -108204978 + AT_rich Low_complexity Low_complexity 1 25 0 1 689 567 43 0 0 chr11 13638975 13639045 -108204811 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 689 1344 260 45 111 chr11 13639054 13639647 -108204209 - RLTR40 LTR ERVK -77 740 187 1 689 504 330 68 37 chr11 13639662 13639986 -108203870 + L1M2 LINE L1 2888 3221 -2922 1 689 1092 112 8 18 chr11 13639986 13640166 -108203690 - ORR1A4 LTR MaLR -1 418 177 2 689 8788 87 25 25 chr11 13640166 13641265 -108202591 + L1Md_F2 LINE L1 4271 5377 -506 2 689 5641 74 21 1 chr11 13641265 13642022 -108201834 - L1Md_F2 LINE L1 0 6582 5811 2 689 8788 87 25 25 chr11 13642022 13642238 -108201618 + L1Md_F2 LINE L1 5378 5586 -297 2 689 7029 97 1 5 chr11 13642239 13643219 -108200637 + L1Md_F2 LINE L1 5588 6563 -19 2 689 282 98 0 0 chr11 13643227 13643268 -108200588 + L1_Mm LINE L1 4973 5013 -870 2 689 713 205 75 0 chr11 13643274 13643435 -108200421 - RLTR40 LTR ERVK -644 173 1 1 689 2996 68 2 5 chr11 13644830 13645227 -108198629 - MTA_Mm LTR MaLR 0 396 1 2 689 27 29 0 0 chr11 13645978 13646012 -108197844 + AT_rich Low_complexity Low_complexity 1 34 0 2 689 385 275 67 7 chr11 13646053 13646203 -108197653 - MLT1B LTR MaLR 0 390 232 2 689 420 341 101 36 chr11 13646917 13647273 -108196583 - MLT1B-int LTR MaLR -639 732 354 2 689 330 299 0 23 chr11 13647298 13647428 -108196428 + CT-rich Low_complexity Low_complexity 1 127 0 2 689 486 0 0 0 chr11 13648373 13648427 -108195429 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 689 440 312 78 0 chr11 13648465 13648593 -108195263 - B4 SINE B4 -127 165 28 2 689 22 35 0 0 chr11 13649193 13649222 -108194634 + AT_rich Low_complexity Low_complexity 1 29 0 2 689 508 346 25 12 chr11 13649223 13649384 -108194472 - B3A SINE B2 -19 179 17 2 689 183 42 0 0 chr11 13649588 13649612 -108194244 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 689 3423 85 4 0 chr11 13649616 13650076 -108193780 - L1_Mus3 LINE L1 -5 6633 6172 2 689 939 207 81 5 chr11 13650368 13650577 -108193279 - URR1B DNA MER1_type 0 225 1 2 689 270 160 0 0 chr11 13650807 13650857 -108192999 + GA-rich Low_complexity Low_complexity 3 52 0 2 689 329 149 0 15 chr11 13653551 13653619 -108190237 + CT-rich Low_complexity Low_complexity 2 68 0 2 689 749 107 18 9 chr11 13653631 13653744 -108190112 - PB1D9 SINE Alu -5 115 2 2 689 7605 91 10 0 chr11 13653758 13654893 -108188963 + L1_Mus3 LINE L1 5488 6633 -5 2 689 4110 127 11 1 chr11 13654902 13655551 -108188305 + L1_Mus3 LINE L1 5983 6637 -1 2 689 604 85 42 0 chr11 13655579 13655697 -108188159 + (TA)n Simple_repeat Simple_repeat 2 124 0 2 689 728 271 39 43 chr11 13655883 13656114 -108187742 - MTC LTR MaLR -189 230 1 2 689 254 260 0 96 chr11 13656117 13656232 -108187624 - MTC-int LTR MaLR -4 1094 991 2 689 271 276 199 40 chr11 13656211 13656362 -108187494 - MTC-int LTR MaLR -203 1055 881 2 689 35579 68 4 14 chr11 13656363 13662524 -108181332 - L1Md_F2 LINE L1 0 6582 484 2 689 1626 264 133 26 chr11 13662561 13662837 -108181019 - MTC-int LTR MaLR -332 766 439 2 689 468 62 0 0 chr11 13662837 13662901 -108180955 + (TTG)n Simple_repeat Simple_repeat 3 66 0 2 689 1626 240 129 25 chr11 13662901 13663301 -108180555 - MTC-int LTR MaLR -820 438 25 2 689 819 256 68 18 chr11 13663317 13663536 -108180320 - MTC LTR MaLR -2 419 190 2 689 4021 157 106 20 chr11 13663544 13664384 -108179472 - RLTR13B3 LTR ERVK -17 912 1 2 689 23 0 0 0 chr11 13665412 13665435 -108178421 + AT_rich Low_complexity Low_complexity 1 23 0 2 689 192 125 0 0 chr11 13666054 13666086 -108177770 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 2 689 5172 188 45 23 chr11 13666696 13667900 -108175956 + Lx5 LINE L1 4284 5550 -333 2 689 1035 93 22 0 chr11 13667900 13668039 -108175817 + B1_Mus2 SINE Alu 1 142 -5 2 689 3057 197 31 31 chr11 13668039 13668617 -108175239 + Lx5 LINE L1 5551 6005 -1045 2 689 255 325 83 8 chr11 13668614 13668735 -108175121 - Lx5 LINE L1 -740 6310 6181 2 689 501 230 40 0 chr11 13668730 13668856 -108175000 - L1_Mur2 LINE L1 -255 5622 5492 2 689 1588 249 40 25 chr11 13668929 13669024 -108174832 - RLTR20A2 LTR ERVK -2 576 477 2 689 495 0 0 0 chr11 13669024 13669079 -108174777 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 689 1588 203 178 83 chr11 13669079 13669478 -108174378 - RLTR20A2 LTR ERVK -102 476 8 2 689 1581 245 101 3 chr11 13669486 13669871 -108173985 + Lx5 LINE L1 6625 7047 -3 2 689 221 284 12 24 chr11 13670000 13670083 -108173773 + (TATG)n Simple_repeat Simple_repeat 1 82 0 2 689 226 219 24 0 chr11 13670166 13670207 -108173649 - B4 SINE B4 -83 209 168 2 689 362 243 72 0 chr11 13670233 13670344 -108173512 + MER57E1 LTR ERV1 99 217 -155 2 689 276 299 83 18 chr11 13670638 13670747 -108173109 + PB1D9 SINE Alu 5 120 0 2 689 538 267 75 25 chr11 13670781 13670981 -108172875 + B3 SINE B2 1 210 -6 2 689 208 186 0 33 chr11 13671350 13671411 -108172445 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 689 596 267 66 43 chr11 13671511 13671722 -108172134 + B3 SINE B2 1 216 0 2 689 1589 208 32 70 chr11 13673398 13673838 -108170018 - Lx4B LINE L1 -6 7052 6630 2 689 1328 230 15 130 chr11 13673851 13674306 -108169550 + RLTR23 LTR ERV1 6 408 -22 2 689 234 139 0 0 chr11 13674580 13674616 -108169240 + RLTR23 LTR ERV1 393 428 -2 2 689 2136 196 29 57 chr11 13674618 13675289 -108168567 - Lx4B LINE L1 -444 6606 5919 2 689 1426 203 112 60 chr11 13675988 13676408 -108167448 + RMER10A LTR ERVL 1 442 0 2 689 432 0 0 0 chr11 13676436 13676484 -108167372 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 689 717 12 0 0 chr11 13676484 13676566 -108167290 + (GA)n Simple_repeat Simple_repeat 1 82 0 2 689 291 71 0 0 chr11 13676873 13676915 -108166941 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 689 925 108 8 0 chr11 13676943 13677072 -108166784 - B1_Mus1 SINE Alu -17 131 2 2 689 235 287 23 0 chr11 13678327 13678414 -108165442 + CT-rich Low_complexity Low_complexity 2 90 0 2 689 430 146 0 10 chr11 13678751 13678855 -108165001 - L1_Mus4 LINE L1 -3 6633 6531 2 689 189 211 50 50 chr11 13679004 13679064 -108164792 + L2 LINE L2 2741 2800 -619 2 689 21 71 0 0 chr11 13679351 13679393 -108164463 + AT_rich Low_complexity Low_complexity 1 42 0 2 689 3081 179 21 3 chr11 13679906 13680574 -108163282 + MusHAL1 LINE L1 1130 1809 -903 2 689 2185 168 2 0 chr11 13680582 13680975 -108162881 - Lx LINE L1 -314 5569 5176 2 689 6189 131 45 5 chr11 13680977 13682048 -108161808 + Lx LINE L1 5534 6646 -8 2 689 4583 227 30 32 chr11 13682056 13683250 -108160606 + Lx3C LINE L1 5783 6974 -2 2 689 354 359 14 0 chr11 13683483 13683628 -108160228 + MLT1A LTR MaLR 195 341 -33 2 689 270 143 0 0 chr11 13684020 13684069 -108159787 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 689 6304 83 8 2 chr11 13685249 13686104 -108157752 - L1_Mus3 LINE L1 -4 6634 5775 2 689 2380 128 0 0 chr11 13686104 13686470 -108157386 + L1_Mm LINE L1 5464 5829 -54 2 689 337 300 42 10 chr11 13687690 13687882 -108155974 - Lx7 LINE L1 0 7696 7499 2 689 622 176 27 38 chr11 13687896 13688079 -108155777 - Lx7 LINE L1 -146 7550 7370 2 689 6803 111 25 18 chr11 13688109 13689242 -108154614 + Lx3A LINE L1 4628 5768 -118 2 689 3430 108 4 6 chr11 13689253 13689755 -108154101 + L1_Mus4 LINE L1 6128 6628 -8 2 689 24 0 0 29 chr11 13689757 13689771 -108154085 + AT_rich Low_complexity Low_complexity 1 14 0 2 689 6791 120 53 12 chr11 13689771 13690912 -108152944 + Lx3A LINE L1 5784 6971 -10 2 689 24 0 0 29 chr11 13690912 13690932 -108152924 + AT_rich Low_complexity Low_complexity 1 20 0 2 689 240 311 0 53 chr11 13691215 13691310 -108152546 + GA-rich Low_complexity Low_complexity 5 94 0 2 689 255 318 122 28 chr11 13692479 13692660 -108151196 + MIR SINE MIR 65 262 0 2 689 1162 123 17 0 chr11 13692855 13693034 -108150822 + B2_Mm1a SINE B2 3 184 -9 2 689 601 159 0 9 chr11 13694776 13694890 -108148966 + Lx3A LINE L1 6869 6981 0 2 689 371 280 11 11 chr11 13695393 13695487 -108148369 - PB1D10 SINE Alu -17 100 7 2 689 14921 164 29 10 chr11 13696159 13697847 -108146009 - Lx LINE L1 -7 6647 4939 2 689 2271 106 6 23 chr11 13697847 13698196 -108145660 + L1_Mus2 LINE L1 6224 6566 0 2 689 14921 189 31 13 chr11 13698196 13700474 -108143382 - Lx LINE L1 -945 4938 2602 2 689 1656 95 39 0 chr11 13700474 13700706 -108143150 - L1_Mus1 LINE L1 -2 6565 6325 2 689 14921 189 31 13 chr11 13700706 13700846 -108143010 - Lx LINE L1 -3282 2601 2464 2 689 2234 99 19 5 chr11 13700842 13701218 -108142638 + MusHAL1 LINE L1 297 677 -2035 2 689 19175 92 14 19 chr11 13701218 13704043 -108139813 + L1_Mus2 LINE L1 643 3459 -2424 2 689 392 0 21 0 chr11 13704043 13704091 -108139765 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 2 689 19175 99 18 7 chr11 13704091 13704919 -108138937 + L1_Mus2 LINE L1 3460 4289 -1594 2 689 6255 114 14 2 chr11 13704932 13706101 -108137755 + L1_Mus2 LINE L1 5384 6566 0 2 689 2160 242 105 29 chr11 13706215 13706864 -108136992 + RMER19A LTR ERVK 1 737 0 2 689 7343 64 7 10 chr11 13707067 13707711 -108136145 - L1Md_F2 LINE L1 -1 6581 5940 2 689 4705 70 2 0 chr11 13707711 13708297 -108135559 - LTRIS_Mus LTR ERV1 0 587 1 2 689 16657 75 2 3 chr11 13708297 13710704 -108133152 - L1Md_F2 LINE L1 -643 5939 3535 2 689 1103 76 14 0 chr11 13710888 13711033 -108132823 + B1_Mm SINE Alu 1 147 0 2 689 414 0 0 0 chr11 13711064 13711110 -108132746 + (CTA)n Simple_repeat Simple_repeat 1 46 0 2 689 27969 53 1 9 chr11 13711153 13715950 -108127906 + L1Md_T LINE L1 73 4927 -959 2 689 36835 7 0 1 chr11 13715951 13721905 -108121951 + L1Md_A LINE L1 1 5586 -297 2 689 8983 7 0 0 chr11 13721905 13722901 -108120955 + L1Md_A LINE L1 5587 6582 0 2 689 5846 18 0 0 chr11 13722947 13723621 -108120235 + L1Md_T LINE L1 4916 5589 -297 2 689 8263 37 0 0 chr11 13723621 13724605 -108119251 + L1Md_T LINE L1 5590 6573 -12 2 689 305 284 0 0 chr11 13724846 13724913 -108118943 + PB1D9 SINE Alu 44 110 -10 2 689 571 204 9 0 chr11 13725723 13725836 -108118020 - URR1A DNA MER1_type -32 194 81 2 689 934 316 83 39 chr11 13725882 13726314 -108117542 - MT2A LTR ERVL -20 513 63 2 689 325 305 41 21 chr11 13726242 13726339 -108117517 - MTE2a LTR MaLR -242 137 39 2 689 252 219 12 24 chr11 13726615 13726699 -108117157 + T-rich Low_complexity Low_complexity 2 84 0 2 689 5073 131 45 11 chr11 13726699 13727525 -108116331 - Lx LINE L1 0 6654 5801 2 689 234 0 0 0 chr11 13727889 13727915 -108115941 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 689 180 0 0 0 chr11 13728069 13728089 -108115767 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2 689 195 42 0 0 chr11 13728336 13728360 -108115496 + (T)n Simple_repeat Simple_repeat 1 24 0 2 689 483 297 8 8 chr11 13728397 13728516 -108115340 - RSINE1 SINE B4 -45 120 2 2 689 815 211 28 32 chr11 13728555 13728771 -108115085 - RMER19C LTR ERVK -2 609 395 2 689 775 232 81 45 chr11 13728767 13728988 -108114868 - RMER19B LTR ERVK -366 536 308 2 689 23 54 0 0 chr11 13729465 13729502 -108114354 + AT_rich Low_complexity Low_complexity 1 37 0 2 689 23 68 0 0 chr11 13729894 13729938 -108113918 + AT_rich Low_complexity Low_complexity 1 44 0 2 689 228 67 0 0 chr11 13730050 13730080 -108113776 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 689 344 288 59 29 chr11 13730383 13730519 -108113337 - MLT1D LTR MaLR -332 173 34 2 689 428 0 19 0 chr11 13730570 13730622 -108113234 + (TTTTG)n Simple_repeat Simple_repeat 4 56 0 2 689 1102 75 7 0 chr11 13731233 13731379 -108112477 + B1_Mus1 SINE Alu 2 148 0 2 689 435 106 0 0 chr11 13732249 13732315 -108111541 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 689 866 146 6 0 chr11 13732333 13732504 -108111352 + (TG)n Simple_repeat Simple_repeat 2 173 0 3 689 2168 242 15 29 chr11 13733205 13733723 -108110133 + RMER5 LTR ERV1 16 526 -8 3 689 262 128 0 0 chr11 13733824 13733863 -108109993 + Lx2 LINE L1 5980 6018 -979 3 689 5119 143 22 8 chr11 13733866 13734710 -108109146 + Lx2 LINE L1 6141 6996 -1 3 689 2710 72 22 61 chr11 13734903 13735315 -108108541 + MTA_Mm LTR MaLR 1 396 0 3 689 7292 79 25 70 chr11 13735315 13736464 -108107392 + MTA_Mm-int LTR MaLR 1 1098 0 3 689 2891 75 18 5 chr11 13736464 13736855 -108107001 + MTA_Mm LTR MaLR 1 396 0 3 689 1813 149 9 40 chr11 13737669 13737997 -108105859 + ORR1A2 LTR MaLR 10 327 0 3 689 1035 95 0 0 chr11 13738104 13738241 -108105615 - B1_Mus1 SINE Alu -10 138 2 3 689 231 246 28 28 chr11 13738353 13738424 -108105432 + CT-rich Low_complexity Low_complexity 2 72 0 3 689 270 308 13 0 chr11 13738444 13738522 -108105334 - ID4_ SINE ID -4 79 1 3 689 236 245 69 30 chr11 13739277 13739378 -108104478 - L1MD3 LINE L1 -303 7482 7378 3 689 348 298 156 27 chr11 13739502 13739778 -108104078 - L1MD3 LINE L1 -608 7177 6884 3 689 606 51 0 0 chr11 13739813 13739891 -108103965 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 689 27 29 0 0 chr11 13740584 13740618 -108103238 + AT_rich Low_complexity Low_complexity 1 34 0 3 689 929 9 9 0 chr11 13741075 13741185 -108102671 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 3 689 392 308 22 54 chr11 13741598 13741821 -108102035 - L1ME3A LINE L1 -203 5970 5755 3 689 2769 214 127 75 chr11 13742178 13743013 -108100843 + RMER19B LTR ERVK 1 878 -24 3 689 1028 96 0 0 chr11 13743020 13743155 -108100701 + B1_Mus1 SINE Alu 1 135 -13 3 689 279 0 0 0 chr11 13743155 13743186 -108100670 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 3 689 237 179 18 0 chr11 13746440 13746496 -108097360 + A-rich Low_complexity Low_complexity 5 61 0 3 689 393 223 18 22 chr11 13747119 13747228 -108096628 + RMER19B LTR ERVK 173 321 -290 3 689 230 250 86 29 chr11 13747221 13747291 -108096565 + PB1D7 SINE Alu 46 119 -1 3 689 5318 65 1 13 chr11 13747590 13748294 -108095562 - L1Md_F2 LINE L1 -5 6577 5882 3 689 459 302 11 48 chr11 13748439 13748627 -108095229 + B3A SINE B2 1 181 -17 3 689 759 116 149 0 chr11 13748745 13748866 -108094990 + B1_Mus1 SINE Alu 1 139 -9 3 689 423 0 0 0 chr11 13748866 13748913 -108094943 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 689 975 291 32 30 chr11 13748928 13749296 -108094560 + Lx5 LINE L1 6159 6742 -718 3 689 537 123 0 0 chr11 13749296 13749402 -108094454 + (CTAA)n Simple_repeat Simple_repeat 3 108 0 3 689 1647 313 16 44 chr11 13749402 13750021 -108093835 + Lx5 LINE L1 6466 7032 -18 3 689 333 0 0 0 chr11 13750710 13750747 -108093109 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 689 717 304 97 49 chr11 13751157 13751506 -108092350 + ORR1D2 LTR MaLR 1 366 -4 3 689 219 351 32 0 chr11 13751937 13752031 -108091825 - MIRb SINE MIR -59 209 113 3 689 203 152 0 0 chr11 13752125 13752158 -108091698 + (ATATG)n Simple_repeat Simple_repeat 2 34 0 3 689 22 35 0 0 chr11 13753092 13753121 -108090735 + AT_rich Low_complexity Low_complexity 1 29 0 3 689 266 260 13 0 chr11 13754630 13754707 -108089149 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 689 231 259 0 0 chr11 13754874 13754928 -108088928 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 689 796 181 0 7 chr11 13756438 13756577 -108087279 - RMER19B LTR ERVK 0 902 765 3 689 302 231 0 0 chr11 13756621 13756673 -108087183 - RMER19B LTR ERVK -597 305 254 3 689 21 36 0 0 chr11 13756694 13756722 -108087134 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 346 169 46 0 chr11 13756974 13757039 -108086817 + RMER17D2 LTR ERVK 742 809 0 3 689 6595 122 7 24 chr11 13757041 13758104 -108085752 + L1_Mm LINE L1 3594 4631 -1252 3 689 450 0 0 0 chr11 13758104 13758154 -108085702 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3 689 6595 122 7 24 chr11 13758154 13758165 -108085691 + L1_Mm LINE L1 4632 4650 -1233 3 689 33740 122 5 3 chr11 13758166 13760448 -108083408 + L1Md_F2 LINE L1 442 2662 -3221 3 689 4291 87 5 12 chr11 13760448 13761039 -108082817 - LTRIS_Mus LTR ERV1 0 587 1 3 86 33740 80 6 3 chr11 13761039 13764916 -108078940 + L1Md_F2 LINE L1 2663 6562 -20 3 690 8008 114 9 2 chr11 13764905 13766822 -108077034 + L1_Mus2 LINE L1 4634 6566 0 3 690 420 331 114 6 chr11 13766849 13767007 -108076849 - B3A SINE B2 -15 183 9 3 690 24 77 0 0 chr11 13767050 13767102 -108076754 + AT_rich Low_complexity Low_complexity 1 52 0 3 690 26 93 0 0 chr11 13767152 13767227 -108076629 + AT_rich Low_complexity Low_complexity 1 75 0 3 690 368 62 0 44 chr11 13767228 13767296 -108076560 - B2_Mm1a SINE B2 -2 191 127 3 690 1095 146 17 0 chr11 13767315 13767493 -108076363 - B2_Mm2 SINE B2 -13 182 2 3 690 238 341 134 6 chr11 13767597 13767933 -108075923 - L1M5 LINE L1 -1131 5015 4637 3 690 654 47 0 0 chr11 13768464 13768550 -108075306 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 3 690 213 39 0 0 chr11 13769025 13769051 -108074805 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 690 292 245 9 9 chr11 13769065 13769172 -108074684 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 690 780 327 27 70 chr11 13769275 13769719 -108074137 + BGLII_B LTR ERVK 7 431 -10 3 690 232 212 0 29 chr11 13770661 13770729 -108073127 + A-rich Low_complexity Low_complexity 2 67 0 3 690 416 51 17 0 chr11 13771840 13771899 -108071957 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 690 342 0 0 0 chr11 13771899 13771936 -108071920 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 690 486 0 0 0 chr11 13772264 13772318 -108071538 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 690 2551 108 45 79 chr11 13772873 13773365 -108070491 + IAPLTR2_Mm LTR ERVK 1 475 0 3 690 565 87 105 97 chr11 13773366 13773480 -108070376 + IAPEz-int LTR ERVK 9 123 -6358 3 690 227 267 0 0 chr11 13773480 13773525 -108070331 + RLTR27 LTR ERVK 231 275 -34 3 690 234 321 0 0 chr11 13773553 13773606 -108070250 + RLTR27 LTR ERVK 223 275 -34 3 690 3576 58 1 16 chr11 13773606 13774184 -108069672 + IAPEz-int LTR ERVK 168 662 -5819 3 690 2724 53 0 6 chr11 13774184 13774528 -108069328 + IAPEz-int LTR ERVK 1359 1700 -4781 3 690 6717 44 2 17 chr11 13774523 13775362 -108068494 + IAPEz-int LTR ERVK 5653 6479 -2 3 690 2534 115 48 54 chr11 13775364 13775842 -108068014 + IAPLTR2_Mm LTR ERVK 1 475 0 3 690 207 0 0 0 chr11 13776111 13776134 -108067722 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 3 690 4874 242 41 5 chr11 13776162 13777207 -108066649 - Lx5 LINE L1 -47 7003 5921 3 690 3057 177 16 9 chr11 13777208 13777893 -108065963 + Lx5 LINE L1 5219 5918 -1132 3 690 1008 307 77 33 chr11 13778960 13779297 -108064559 + MTE2b LTR MaLR 22 373 -6 3 690 281 319 0 58 chr11 13780492 13780612 -108063244 - PB1D10 SINE Alu 0 117 5 3 690 254 191 43 14 chr11 13781698 13781767 -108062089 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 3 690 201 39 0 0 chr11 13782650 13782676 -108061180 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 690 330 45 0 0 chr11 13783130 13783174 -108060682 + (T)n Simple_repeat Simple_repeat 1 44 0 3 690 347 13 24 94 chr11 13783232 13783317 -108060539 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 3 690 247 346 109 29 chr11 13783545 13783682 -108060174 - MTE2a-int LTR MaLR -798 782 635 3 690 1155 314 26 13 chr11 13783746 13784133 -108059723 - MTE2a-int LTR MaLR -1187 393 2 3 690 661 280 77 0 chr11 13784140 13784308 -108059548 - MTE2a LTR MaLR -5 374 194 3 690 270 340 27 27 chr11 13784326 13784438 -108059418 - MTE2a LTR MaLR -248 131 20 3 690 201 74 0 0 chr11 13784488 13784515 -108059341 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 3 690 1231 224 161 16 chr11 13784690 13785130 -108058726 - RLTR28 LTR ERVL -15 509 6 3 690 1093 82 0 7 chr11 13785394 13785541 -108058315 + B1_Mm SINE Alu 2 147 0 3 690 255 61 0 0 chr11 13785541 13785574 -108058282 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 3 690 198 0 51 51 chr11 13785719 13785758 -108058098 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 690 848 272 13 4 chr11 13786941 13787185 -108056671 - Lx6 LINE L1 -725 6735 6273 3 690 913 221 21 191 chr11 13787212 13787692 -108056164 - Lx6 LINE L1 -1290 6170 5757 3 690 2230 236 41 35 chr11 13787729 13788769 -108055087 + L1_Mur2 LINE L1 805 1783 -4094 3 690 10933 49 0 0 chr11 13788904 13790253 -108053603 + L1Md_F3 LINE L1 4238 5586 -297 3 690 8184 39 1 4 chr11 13790253 13791243 -108052613 + L1Md_F3 LINE L1 5587 6573 -11 3 690 791 21 0 10 chr11 13791569 13791667 -108052189 + (TTC)n Simple_repeat Simple_repeat 3 99 0 3 690 776 314 120 7 chr11 13792684 13792992 -108050864 - MTD LTR MaLR -14 405 63 3 690 353 244 23 0 chr11 13793207 13793293 -108050563 - B3 SINE B2 0 216 129 3 690 519 56 0 0 chr11 13793377 13793448 -108050408 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 690 333 236 41 54 chr11 13793450 13793595 -108050261 + Lx5 LINE L1 6931 7054 -4 3 690 5585 52 1 0 chr11 13794967 13795665 -108048191 + L1Md_F2 LINE L1 4888 5586 -297 3 690 7918 42 6 17 chr11 13795665 13796672 -108047184 + L1Md_F2 LINE L1 5587 6582 0 3 690 681 114 94 31 chr11 13796793 13796920 -108046936 + B1_Mus2 SINE Alu 1 135 -12 3 690 1104 114 0 0 chr11 13796920 13797087 -108046769 + (GAAA)n Simple_repeat Simple_repeat 3 169 0 3 690 203 147 0 0 chr11 13797089 13797123 -108046733 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 690 977 263 45 28 chr11 13797737 13798023 -108045833 - MTE2b LTR MaLR -53 326 36 3 690 852 167 91 0 chr11 13798050 13798236 -108045620 + URR1B DNA MER1_type 2 222 -3 3 690 2403 117 128 27 chr11 13799267 13799705 -108044151 - RLTR45 LTR ERVK 0 482 1 3 690 229 175 17 17 chr11 13799921 13799979 -108043877 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 3 690 445 309 49 0 chr11 13799993 13800216 -108043640 - L1MA6 LINE L1 -11 6289 6056 3 690 439 354 175 40 chr11 13800572 13801597 -108042259 + BLACKJACK DNA AcHobo 117 1279 -1665 3 690 323 363 24 16 chr11 13801928 13802054 -108041802 - B4 SINE B4 -30 262 136 3 690 361 294 54 18 chr11 13802777 13802943 -108040913 - L1M5 LINE L1 -389 5790 5619 3 690 3499 175 129 28 chr11 13803383 13804276 -108039580 - RLTR13C1 LTR ERVK 0 983 1 3 690 21 100 0 0 chr11 13804387 13804457 -108039399 + AT_rich Low_complexity Low_complexity 1 70 0 3 690 522 70 0 0 chr11 13804557 13804628 -108039228 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 690 332 150 0 12 chr11 13804800 13804881 -108038975 + CT-rich Low_complexity Low_complexity 1 80 0 3 690 225 0 0 0 chr11 13805339 13805364 -108038492 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 690 431 289 45 126 chr11 13805499 13805697 -108038159 + MER5A DNA MER1_type 1 182 -7 3 690 258 91 36 18 chr11 13805938 13805994 -108037862 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 3 690 226 310 67 22 chr11 13806192 13806281 -108037575 - MLT1A0 LTR MaLR -16 374 282 3 690 1128 173 5 38 chr11 13806298 13806508 -108037348 - ORR1C2 LTR MaLR -10 374 172 3 690 251 169 33 22 chr11 13806526 13806617 -108037239 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 4 690 267 259 0 0 chr11 13806620 13806674 -108037182 - ORR1C2 LTR MaLR -202 176 123 3 690 990 144 15 126 chr11 13806678 13806940 -108036916 - L1_Mus3 LINE L1 -1 6637 6405 4 690 593 263 16 1 chr11 13806940 13807090 -108036766 - ORR1C2 LTR MaLR -219 151 1 3 690 359 346 107 6 chr11 13807141 13807318 -108036538 - MLT1A0 LTR MaLR -164 201 7 3 690 492 18 0 0 chr11 13807804 13807861 -108035995 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 690 30 77 0 0 chr11 13807939 13808004 -108035852 + AT_rich Low_complexity Low_complexity 1 65 0 4 690 619 237 82 50 chr11 13808734 13808916 -108034940 + Lx3C LINE L1 6787 6974 -2 4 690 56 29 0 0 chr11 13808916 13808986 -108034870 + AT_rich Low_complexity Low_complexity 1 70 0 4 690 3127 41 5 18 chr11 13809317 13809718 -108034138 - MTA_Mm LTR MaLR 0 396 1 4 690 7174 87 26 70 chr11 13809718 13810866 -108032990 - MTA_Mm-int LTR MaLR 0 1098 1 4 690 3253 43 5 2 chr11 13810866 13811261 -108032595 - MTA_Mm LTR MaLR 0 396 1 4 690 2702 226 84 12 chr11 13811298 13812127 -108031729 + MYSERV-int LTR ERVK 5658 6546 -4 4 690 259 219 0 59 chr11 13812128 13812196 -108031660 + RLTR12B LTR ERVK 3 66 -502 4 690 6092 85 47 2 chr11 13812196 13812729 -108031127 - L1_Mur1 LINE L1 -42 5844 5295 4 690 210 37 0 0 chr11 13812729 13812756 -108031100 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 690 6092 85 47 2 chr11 13812756 13813087 -108030769 - L1_Mur1 LINE L1 -592 5294 4942 4 690 6781 98 68 62 chr11 13813105 13814109 -108029747 + Lx3_Mus LINE L1 5814 6775 -234 4 690 414 0 0 0 chr11 13814109 13814155 -108029701 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 690 6781 98 68 62 chr11 13814155 13814331 -108029525 + Lx3_Mus LINE L1 6776 7000 -9 4 690 369 218 13 0 chr11 13814341 13814419 -108029437 + RLTR12B LTR ERVK 54 132 -396 4 690 30922 97 19 13 chr11 13814419 13819762 -108024094 + L1Md_F2 LINE L1 220 5585 -298 4 690 7744 62 5 3 chr11 13819763 13820745 -108023111 + L1Md_F2 LINE L1 5587 6570 -12 4 690 1236 263 31 9 chr11 13820746 13821065 -108022791 + RLTR12B LTR ERVK 117 442 -86 4 690 189 94 0 0 chr11 13821377 13821409 -108022447 + (A)n Simple_repeat Simple_repeat 1 32 0 4 690 479 151 16 32 chr11 13821413 13821536 -108022320 - L1_Mus3 LINE L1 -6 6632 6512 4 690 1820 106 31 22 chr11 13822194 13822513 -108021343 - RLTRETN_Mm LTR ERVK 0 322 1 4 690 18565 146 26 18 chr11 13822513 13829336 -108014520 - ETnERV2-int LTR ERVK -172 7234 1 4 690 1786 112 31 22 chr11 13829336 13829655 -108014201 - RLTRETN_Mm LTR ERVK 0 322 1 4 690 230 147 0 0 chr11 13830229 13830263 -108013593 + U2 snRNA snRNA 1 34 -154 4 690 255 353 92 82 chr11 13830317 13830671 -108013185 + ORR1E LTR MaLR 2 379 0 4 690 497 65 65 11 chr11 13831100 13831193 -108012663 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 4 690 998 129 12 0 chr11 13831194 13831365 -108012491 + (TTCC)n Simple_repeat Simple_repeat 3 175 0 4 690 22 0 0 0 chr11 13832265 13832287 -108011569 + AT_rich Low_complexity Low_complexity 1 22 0 4 690 32 26 0 0 chr11 13833004 13833043 -108010813 + AT_rich Low_complexity Low_complexity 1 39 0 4 690 352 321 138 6 chr11 13833310 13833470 -108010386 + MER20 DNA MER1_type 39 219 0 4 690 195 129 0 0 chr11 13833867 13833898 -108009958 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 4 690 638 185 93 27 chr11 13833943 13834093 -108009763 - RLTR22_Mur LTR ERVK -1688 160 1 4 690 1310 247 106 9 chr11 13834249 13834580 -108009276 + MTC LTR MaLR 59 421 0 4 690 1885 276 42 49 chr11 13834580 13835277 -108008579 + Lx7 LINE L1 6853 7544 -152 4 690 414 238 38 47 chr11 13835337 13835443 -108008413 - PB1D9 SINE Alu -7 113 9 4 690 266 333 40 13 chr11 13835386 13835444 -108008412 - B4A SINE B4 -142 150 90 4 690 442 202 25 16 chr11 13835444 13835565 -108008291 + Lx7 LINE L1 7559 7680 -16 4 690 266 333 40 13 chr11 13835565 13835582 -108008274 - B4A SINE B4 -203 89 73 4 690 516 121 0 0 chr11 13836620 13836711 -108007145 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 690 428 0 19 0 chr11 13836738 13836790 -108007066 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 690 534 353 72 13 chr11 13836801 13837036 -108006820 - B4A SINE B4 -43 249 1 4 690 23 0 0 0 chr11 13837040 13837063 -108006793 + AT_rich Low_complexity Low_complexity 1 23 0 4 690 516 150 18 9 chr11 13837323 13837437 -108006419 + (CATATA)n Simple_repeat Simple_repeat 5 119 0 4 690 241 324 92 9 chr11 13837437 13837546 -108006310 - MLT2D LTR ERVL -40 515 398 4 690 897 285 80 11 chr11 13837658 13837921 -108005935 - MLT2D LTR ERVL -133 281 1 4 690 4166 252 66 14 chr11 13839904 13840984 -108002872 - Lx5 LINE L1 -3 7047 5907 4 690 267 93 0 0 chr11 13840995 13841038 -108002818 + (T)n Simple_repeat Simple_repeat 1 43 0 4 690 1778 200 10 3 chr11 13841058 13841464 -108002392 - Lx5 LINE L1 -1099 5951 5537 4 690 2394 217 8 11 chr11 13842009 13842535 -108001321 - Lx5 LINE L1 -358 5519 4996 4 690 221 57 29 0 chr11 13844437 13844472 -107999384 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 690 1215 261 63 61 chr11 13845221 13845900 -107997956 - RMER19B LTR ERVK 0 902 9 4 690 248 200 14 0 chr11 13845905 13845975 -107997881 + CT-rich Low_complexity Low_complexity 2 72 0 4 690 854 67 7 22 chr11 13846011 13846149 -107997707 + (TTCTC)n Simple_repeat Simple_repeat 5 140 0 4 690 261 0 0 0 chr11 13846152 13846181 -107997675 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 690 231 36 0 0 chr11 13846181 13846208 -107997648 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 690 443 400 29 4 chr11 13846230 13846511 -107997345 - B4A SINE B4 0 292 5 4 690 5434 179 20 26 chr11 13846591 13848108 -107995748 + L1Md_T LINE L1 99 1205 -5411 4 690 36154 34 0 0 chr11 13848114 13852530 -107991326 + L1Md_T LINE L1 1170 5586 -297 4 690 7964 56 0 0 chr11 13852530 13853526 -107990330 + L1Md_T LINE L1 5587 6582 0 4 690 239 0 0 31 chr11 13855131 13855163 -107988693 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 4 690 1869 184 21 58 chr11 13855261 13855642 -107988214 - ORR1B2 LTR MaLR 0 367 1 4 690 2267 99 62 110 chr11 13856032 13856531 -107987325 + IAPLTR2_Mm LTR ERVK 1 475 0 4 690 189 0 0 0 chr11 13856574 13856595 -107987261 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 690 407 355 42 32 chr11 13856651 13856840 -107987016 - RLTR18B LTR ERVK 0 512 322 4 690 3201 217 75 47 chr11 13857166 13858223 -107985633 + MYSERV16_I-int LTR ERVK 1 1372 -1470 4 690 6702 129 28 5 chr11 13858241 13859547 -107984309 - L1_Mus3 LINE L1 -3 6635 5312 4 690 10707 140 48 24 chr11 13859546 13862313 -107981543 - L1VL1 LINE L1 -674 3024 191 4 690 6782 163 13 27 chr11 13862318 13863512 -107980344 + Lx3C LINE L1 3493 4676 -1201 4 690 1092 63 0 34 chr11 13863512 13863659 -107980197 + B1_Mus2 SINE Alu 1 142 -5 4 690 6782 190 425 19 chr11 13863659 13863885 -107979971 + Lx3C LINE L1 4677 4988 -898 4 690 3476 181 0 57 chr11 13863883 13864107 -107979749 + Lx3C LINE L1 5538 5750 -136 4 690 1684 21 0 0 chr11 13864107 13864299 -107979557 - B2_Mm1t SINE B2 0 193 2 4 690 3476 201 167 18 chr11 13864299 13865279 -107978577 + Lx3C LINE L1 5748 6898 -78 4 690 443 15 31 0 chr11 13866654 13866719 -107977137 - L1Md_F3 LINE L1 0 6584 6518 4 690 21 0 0 0 chr11 13867280 13867301 -107976555 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 23 0 0 0 chr11 13867440 13867463 -107976393 + AT_rich Low_complexity Low_complexity 1 23 0 4 690 2806 27 0 0 chr11 13868030 13868368 -107975488 + ORR1A0 LTR MaLR 1 338 -8 4 690 13803 50 14 6 chr11 13868372 13870150 -107973706 + ORR1A0-int LTR MaLR 1 1792 0 4 690 2915 26 9 0 chr11 13870150 13870493 -107973363 + ORR1A0 LTR MaLR 1 346 0 4 690 210 37 0 0 chr11 13870859 13870886 -107972970 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 690 28 29 0 0 chr11 13871490 13871525 -107972331 + AT_rich Low_complexity Low_complexity 1 35 0 4 690 198 128 0 0 chr11 13872195 13872234 -107971622 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 690 372 329 27 27 chr11 13872314 13872464 -107971392 - Lx8 LINE L1 -135 7338 7189 4 690 1634 296 52 43 chr11 13872580 13873056 -107970800 + L1_Mur3 LINE L1 3975 4447 -1433 4 690 399 41 0 0 chr11 13873056 13873105 -107970751 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 690 1634 296 52 43 chr11 13873105 13873568 -107970288 + L1_Mur3 LINE L1 4448 4923 -957 4 690 315 0 0 0 chr11 13873568 13873603 -107970253 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 690 299 192 9 18 chr11 13873682 13873795 -107970061 + GA-rich Low_complexity Low_complexity 1 111 0 4 690 477 288 40 5 chr11 13873921 13874088 -107969768 - MLT2D LTR ERVL -355 201 34 4 690 180 358 10 69 chr11 13874404 13874506 -107969350 - MIR SINE MIR -114 148 53 4 690 261 83 0 0 chr11 13874925 13874961 -107968895 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 690 826 272 80 32 chr11 13876034 13876463 -107967393 - MT2B LTR ERVL -75 526 1 4 690 3184 192 15 19 chr11 13877687 13878276 -107965580 + Lx LINE L1 470 1056 -5578 4 690 5017 122 58 38 chr11 13878276 13879161 -107964695 - RLTR13D6 LTR ERVK 0 902 1 4 690 19938 166 56 52 chr11 13879161 13884747 -107959109 + Lx LINE L1 1051 6654 0 4 690 288 53 0 0 chr11 13884793 13884831 -107959025 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 690 628 300 88 36 chr11 13885029 13885592 -107958264 - L1M4 LINE L1 -1461 4685 4083 4 690 1186 318 80 15 chr11 13887218 13887755 -107956101 + RCHARR1 DNA MER1_type 29 600 -374 4 690 1805 320 74 31 chr11 13887857 13888727 -107955129 + Lx7 LINE L1 6096 7002 -694 4 690 501 180 38 38 chr11 13888730 13888863 -107954993 + Lx2A LINE L1 5178 5310 -567 4 690 3365 82 75 0 chr11 13888848 13889312 -107954544 + L1_Mus1 LINE L1 6023 6521 -46 4 690 21 0 0 0 chr11 13889325 13889346 -107954510 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 415 147 0 0 chr11 13889364 13889439 -107954417 + Lx2A LINE L1 5283 5357 -520 4 690 1791 78 0 4 chr11 13889439 13889682 -107954174 + Lx LINE L1 5605 5846 -808 4 690 754 106 0 107 chr11 13889682 13889851 -107954005 + Lx LINE L1 6502 6652 -2 4 690 8802 143 13 11 chr11 13889862 13891491 -107952365 + Lx2A LINE L1 5357 6992 -16 4 690 360 64 0 0 chr11 13891492 13891539 -107952317 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 690 367 252 96 58 chr11 13891637 13891793 -107952063 + RCHARR1 DNA MER1_type 661 822 -152 4 690 1180 262 58 52 chr11 13892597 13892989 -107950867 - MTD LTR MaLR -14 405 18 4 690 391 152 66 9 chr11 13893137 13893243 -107950613 - Lx9 LINE L1 -7 7637 7526 4 691 32 67 0 0 chr11 13893932 13893992 -107949864 + AT_rich Low_complexity Low_complexity 1 60 0 4 691 516 303 68 46 chr11 13894081 13894361 -107949495 + B4 SINE B4 5 290 -2 4 691 711 33 0 0 chr11 13894404 13894494 -107949362 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 691 22 35 0 0 chr11 13895158 13895187 -107948669 + AT_rich Low_complexity Low_complexity 1 29 0 4 691 3876 49 0 0 chr11 13895854 13896321 -107947535 + L1Md_F2 LINE L1 6114 6580 -2 4 691 375 278 32 41 chr11 13897108 13897250 -107946606 + Lx8 LINE L1 6931 7080 -393 4 691 503 340 38 5 chr11 13897292 13897502 -107946354 + Lx8 LINE L1 7043 7259 -214 4 691 314 307 31 16 chr11 13897699 13897828 -107946028 + MLT1B LTR MaLR 160 290 -100 4 691 329 322 58 26 chr11 13898246 13898402 -107945454 - RSINE1 SINE B4 0 165 5 4 691 24 32 0 0 chr11 13900243 13900274 -107943582 + AT_rich Low_complexity Low_complexity 1 31 0 4 691 4829 31 2 10 chr11 13900956 13901551 -107942305 - L1Md_F3 LINE L1 -1367 4516 3927 4 691 8603 52 0 0 chr11 13901533 13902597 -107941259 + L1Md_F3 LINE L1 4523 5586 -297 4 691 7804 51 14 0 chr11 13902597 13903581 -107940275 + L1Md_F3 LINE L1 5587 6584 0 4 691 381 22 0 0 chr11 13904097 13904143 -107939713 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 691 653 288 94 30 chr11 13904324 13904665 -107939191 + RLTR20D LTR ERVK 1 415 -90 4 691 436 32 32 0 chr11 13904665 13904727 -107939129 + (TTG)n Simple_repeat Simple_repeat 2 65 0 4 691 509 292 218 38 chr11 13904727 13904812 -107939044 + RLTR20D LTR ERVK 416 503 -2 4 691 6797 82 32 2 chr11 13904812 13905751 -107938105 + RLTR13D5 LTR ERVK 1 967 -56 4 691 22 56 0 0 chr11 13906434 13906470 -107937386 + AT_rich Low_complexity Low_complexity 1 36 0 5 691 243 0 0 0 chr11 13906610 13906637 -107937219 + (CTA)n Simple_repeat Simple_repeat 1 27 0 5 691 495 78 0 0 chr11 13906637 13906714 -107937142 + (TCC)n Simple_repeat Simple_repeat 3 79 0 5 691 1194 107 0 0 chr11 13906825 13907002 -107936854 + (GA)n Simple_repeat Simple_repeat 2 178 0 5 691 851 147 13 0 chr11 13907003 13907160 -107936696 + GA-rich Low_complexity Low_complexity 2 160 0 5 691 2983 73 13 2 chr11 13907198 13907596 -107936260 - L1_Mus2 LINE L1 -1 6565 6164 5 691 1108 90 0 0 chr11 13907596 13907751 -107936105 + L1_Mus2 LINE L1 6000 6154 -412 5 691 329 202 67 84 chr11 13907751 13907870 -107935986 + RLTR22_Mur LTR ERVK 1105 1221 -627 5 691 818 264 112 91 chr11 13907885 13908053 -107935803 + RLTR22_Mur LTR ERVK 1413 1571 -277 5 691 3027 55 3 0 chr11 13908053 13908433 -107935423 + L1Md_F2 LINE L1 6200 6580 -2 5 691 818 264 112 91 chr11 13908433 13908647 -107935209 + RLTR22_Mur LTR ERVK 1572 1803 -45 5 691 769 260 132 33 chr11 13908714 13909016 -107934840 - Lx8 LINE L1 -438 7035 6704 5 691 262 319 49 42 chr11 13909060 13909204 -107934652 + Lx7 LINE L1 5596 5740 -1956 5 691 336 48 0 0 chr11 13909790 13909832 -107934024 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 691 180 0 0 0 chr11 13909832 13909851 -107934005 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 691 422 36 18 0 chr11 13909851 13909907 -107933949 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 691 252 0 0 0 chr11 13910782 13910810 -107933046 + (A)n Simple_repeat Simple_repeat 1 28 0 5 691 228 337 30 10 chr11 13910894 13910993 -107932863 + PB1D10 SINE Alu 17 117 0 5 691 578 333 8 34 chr11 13911275 13911511 -107932345 - Lx7 LINE L1 -1121 6575 6346 5 691 1106 242 65 7 chr11 13911517 13911796 -107932060 - Lx7 LINE L1 -98 5782 5488 5 691 2359 268 55 129 chr11 13911796 13913212 -107930644 - Lx7 LINE L1 -2734 3146 1859 5 691 600 14 0 0 chr11 13913212 13913281 -107930575 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 691 2359 285 43 82 chr11 13913281 13914437 -107929419 - Lx7 LINE L1 -4022 1858 724 5 691 223 288 75 0 chr11 13914461 13914541 -107929315 + MIRb SINE MIR 177 262 -6 5 691 537 44 0 0 chr11 13915447 13915515 -107928341 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 691 215 276 15 38 chr11 13915593 13915725 -107928131 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 5 691 22 56 0 0 chr11 13916606 13916642 -107927214 + AT_rich Low_complexity Low_complexity 1 36 0 5 691 5598 141 31 43 chr11 13917430 13918733 -107925123 + Lx LINE L1 5345 6652 -2 5 691 1150 192 9 22 chr11 13918834 13919058 -107924798 - RLTR20B3 LTR ERVK 0 577 357 5 691 814 358 105 12 chr11 13919106 13919699 -107924157 + Lx8 LINE L1 6451 7098 -375 5 691 572 176 252 15 chr11 13919718 13919845 -107924011 - Lx9 LINE L1 0 7644 7483 5 691 327 49 0 0 chr11 13919845 13919886 -107923970 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 691 572 176 252 15 chr11 13919886 13919960 -107923896 - Lx9 LINE L1 -162 7482 7397 5 691 969 138 0 0 chr11 13920959 13921118 -107922738 + (GAAA)n Simple_repeat Simple_repeat 4 162 0 5 691 739 317 24 5 chr11 13921238 13921444 -107922412 + B3 SINE B2 1 210 -6 5 691 1080 108 0 0 chr11 13922063 13922211 -107921645 - B1_Mus1 SINE Alu 0 148 1 5 691 306 0 0 0 chr11 13922955 13922989 -107920867 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 691 208 139 28 0 chr11 13923005 13923041 -107920815 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 691 1351 247 48 48 chr11 13923130 13923504 -107920352 - ORR1D1 LTR MaLR 0 374 1 5 691 294 29 0 0 chr11 13923575 13923610 -107920246 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 691 432 156 16 1 chr11 13924206 13924285 -107919571 - RLTR17 LTR ERVK 0 561 490 5 691 667 203 0 0 chr11 13924311 13924429 -107919427 - RLTR17 LTR ERVK -328 364 247 5 691 2447 184 34 31 chr11 13924467 13925023 -107918833 - RLTR31_Mm LTR ERVK -3 558 1 5 691 232 271 80 40 chr11 13925302 13925402 -107918454 - L1MB2 LINE L1 -233 5938 5835 5 691 292 306 85 26 chr11 13925719 13926071 -107917785 - L1M4 LINE L1 -1642 4504 4132 5 691 482 181 12 144 chr11 13926480 13926624 -107917232 - RLTR25A LTR ERVK 0 1103 898 5 691 3705 61 0 15 chr11 13926646 13927127 -107916729 - L1Md_F2 LINE L1 -73 5810 5337 5 691 5653 91 1 4 chr11 13927128 13927902 -107915954 + L1Md_F2 LINE L1 5800 6571 -11 5 691 708 227 98 67 chr11 13928007 13928238 -107915618 - RLTR25A LTR ERVK -214 889 651 5 691 1081 225 53 20 chr11 13928238 13928542 -107915314 - RMER17C LTR ERVK 0 410 97 5 691 909 336 75 10 chr11 13928818 13929341 -107914515 + Lx9 LINE L1 6339 6895 -749 5 691 22 56 0 0 chr11 13929837 13929873 -107913983 + AT_rich Low_complexity Low_complexity 1 36 0 5 691 543 314 33 0 chr11 13929997 13930150 -107913706 + B3A SINE B2 4 161 -37 5 691 483 107 0 0 chr11 13930170 13930245 -107913611 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 691 288 0 0 0 chr11 13930302 13930334 -107913522 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 691 212 155 34 17 chr11 13930769 13930828 -107913028 + A-rich Low_complexity Low_complexity 2 61 0 5 691 209 364 83 25 chr11 13931288 13931409 -107912447 + MIR SINE MIR 37 164 -98 5 691 665 321 93 35 chr11 13931917 13932314 -107911542 - RMER5 LTR ERV1 -20 514 95 5 691 2419 121 12 29 chr11 13932533 13932949 -107910907 + RLTR9E LTR ERVK 1 409 0 5 691 11055 118 137 21 chr11 13935635 13937808 -107906048 - L1VL1 LINE L1 -2353 3530 1076 5 691 236 391 23 0 chr11 13938015 13938189 -107905667 + L1MA6 LINE L1 5828 6005 -295 5 691 255 31 0 0 chr11 13938691 13938723 -107905133 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 691 279 343 9 19 chr11 13939108 13939215 -107904641 + MLT1A LTR MaLR 252 357 -17 5 691 268 305 44 44 chr11 13939248 13939385 -107904471 + MLT-int LTR MaLR 40 176 -1559 5 691 246 23 70 0 chr11 13939385 13939428 -107904428 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 5 691 1144 71 0 0 chr11 13939436 13939577 -107904279 - B1_Mus2 SINE Alu -6 141 1 5 691 450 328 108 44 chr11 13939594 13939910 -107903946 + MLT-int LTR MaLR 188 523 -1212 5 691 5678 75 46 8 chr11 13939940 13940716 -107903140 + RLTR13D1 LTR ERVK 1 806 0 5 691 230 371 44 11 chr11 13940820 13940910 -107902946 + MLT-int LTR MaLR 715 807 -928 5 691 2754 35 6 0 chr11 13941231 13941570 -107902286 + MTA_Mm LTR MaLR 1 341 -55 5 691 2764 50 22 13 chr11 13941570 13941972 -107901884 + ORR1A0 LTR MaLR 1 396 0 5 691 38 22 0 0 chr11 13942491 13942536 -107901320 + AT_rich Low_complexity Low_complexity 1 45 0 5 691 226 222 0 0 chr11 13942551 13942605 -107901251 - L1M2 LINE L1 -412 5888 5835 5 691 318 338 19 5 chr11 13942625 13942749 -107901107 + MTE2b LTR MaLR 9 135 -244 5 691 192 135 0 0 chr11 13942770 13942807 -107901049 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 691 3116 148 16 6 chr11 13942807 13943297 -107900559 + RLTR26 LTR ERVK 4 498 -144 5 691 313 143 0 51 chr11 13943323 13943382 -107900474 + RLTR26 LTR ERVK 587 642 0 5 691 645 14 0 0 chr11 13943406 13943480 -107900376 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 691 608 285 98 5 chr11 13943490 13943684 -107900172 + MTE2b LTR MaLR 167 378 -1 5 691 452 326 112 27 chr11 13943684 13944052 -107899804 - L1M5 LINE L1 -439 5735 5339 5 691 1019 250 41 0 chr11 13944304 13944548 -107899308 - Lx8 LINE L1 -299 7174 6921 5 691 369 314 0 0 chr11 13944541 13944643 -107899213 - Lx8 LINE L1 -911 6562 6461 5 691 359 307 120 27 chr11 13944940 13945124 -107898732 - L1M5 LINE L1 -3717 2429 2229 5 691 729 365 46 12 chr11 13945841 13946187 -107897669 + ORR1E LTR MaLR 1 358 -1 5 691 722 290 126 28 chr11 13946963 13947511 -107896345 - MER45R DNA Tip100 -30 1551 948 5 691 1153 202 253 89 chr11 13947511 13947956 -107895900 + RMER12 LTR ERVK 1 518 -804 5 691 213 245 0 0 chr11 13947962 13948011 -107895845 + T-rich Low_complexity Low_complexity 1 49 0 5 691 36789 61 1 8 chr11 13948013 13954069 -107889787 - L1Md_F3 LINE L1 -14 6570 561 5 691 275 172 87 54 chr11 13954095 13954187 -107889669 + RLTR22_Mus LTR ERVK 496 590 -1218 5 691 280 307 65 54 chr11 13954241 13954271 -107889585 + RLTR22_Mur LTR ERVK 587 621 -1227 5 691 240 35 0 0 chr11 13954271 13954300 -107889556 + (TGG)n Simple_repeat Simple_repeat 2 30 0 5 691 280 307 65 54 chr11 13954300 13954455 -107889401 + RLTR22_Mur LTR ERVK 622 774 -1074 5 691 239 211 19 0 chr11 13954523 13954575 -107889281 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 691 308 306 14 56 chr11 13954575 13954692 -107889164 + RMER12B LTR ERVK 1142 1253 -151 5 691 486 108 0 0 chr11 13954692 13954766 -107889090 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 691 308 306 14 56 chr11 13954766 13954790 -107889066 + RMER12B LTR ERVK 1254 1276 -128 5 691 925 92 0 14 chr11 13954810 13954954 -107888902 + (TTC)n Simple_repeat Simple_repeat 2 143 0 5 691 623 209 58 143 chr11 13954956 13955179 -107888677 + RMER12 LTR ERVK 1013 1216 -106 5 691 225 309 24 0 chr11 13955248 13955330 -107888526 - MER45R DNA Tip100 -635 946 863 5 691 551 330 43 39 chr11 13955330 13955538 -107888318 + B3 SINE B2 1 209 -7 5 691 296 360 57 45 chr11 13956635 13956792 -107887064 - MLT1B LTR MaLR -1 389 231 5 691 4360 83 10 8 chr11 13956950 13957543 -107886313 + L1_Mus1 LINE L1 5974 6567 0 5 691 2829 268 29 22 chr11 13957652 13958376 -107885480 - Lx6 LINE L1 -46 7414 6686 5 691 253 143 0 0 chr11 13958649 13958691 -107885165 - L1_Mur1 LINE L1 -1437 4449 4408 5 691 33 25 0 0 chr11 13958728 13958768 -107885088 + AT_rich Low_complexity Low_complexity 1 40 0 5 691 2654 66 0 17 chr11 13959403 13959755 -107884101 - ORR1A0 LTR MaLR 0 346 1 5 691 18203 137 80 17 chr11 13960706 13961289 -107882567 + Lx3B LINE L1 2312 2893 -2993 5 691 996 97 0 70 chr11 13961289 13961432 -107882424 + B1_Mus2 SINE Alu 2 136 -11 5 691 189 0 0 0 chr11 13961432 13961453 -107882403 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 5 691 996 97 0 70 chr11 13961453 13961465 -107882391 + B1_Mus2 SINE Alu 137 146 -1 5 691 18203 137 80 17 chr11 13961465 13962717 -107881139 + Lx3B LINE L1 2894 4354 -1532 5 691 1224 41 0 0 chr11 13962717 13962864 -107880992 - B1_Mus2 SINE Alu 0 147 1 5 691 18203 142 66 14 chr11 13962864 13965435 -107878421 + Lx3B LINE L1 4355 6973 0 5 691 6374 111 0 0 chr11 13966696 13967594 -107876262 - Lx LINE L1 -6 6648 5751 5 691 26 64 0 0 chr11 13967747 13967794 -107876062 + AT_rich Low_complexity Low_complexity 1 47 0 5 691 375 119 0 0 chr11 13967937 13968004 -107875852 + (TATG)n Simple_repeat Simple_repeat 2 68 0 5 691 1017 110 7 0 chr11 13968004 13968150 -107875706 - B1_Mus1 SINE Alu -1 147 1 5 691 360 0 0 0 chr11 13968556 13968596 -107875260 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 691 265 154 0 0 chr11 13969162 13969214 -107874642 - Lx8 LINE L1 -11 7462 7411 5 691 321 174 0 0 chr11 13969277 13969346 -107874510 + CT-rich Low_complexity Low_complexity 2 70 0 5 691 794 318 180 14 chr11 13969593 13970177 -107873679 - Lx8 LINE L1 -457 7016 6336 5 691 280 247 71 43 chr11 13970715 13970878 -107872978 - Lx8 LINE L1 -1847 5849 5684 5 691 29 60 0 0 chr11 13971932 13971982 -107871874 + AT_rich Low_complexity Low_complexity 1 50 0 5 691 1782 176 37 93 chr11 13972688 13973096 -107870760 + RLTR41 LTR ERV1 62 446 0 6 691 213 143 0 82 chr11 13973934 13973995 -107869861 + T-rich Low_complexity Low_complexity 5 60 0 6 691 484 312 97 0 chr11 13974317 13974461 -107869395 - RSINE1 SINE B4 -4 161 4 6 691 5536 90 19 0 chr11 13974774 13975531 -107868325 - L1_Mus1 LINE L1 -4 6563 5793 6 691 4943 92 1 4 chr11 13975532 13976210 -107867646 + L1_Mus1 LINE L1 5129 5804 -79 6 691 2080 325 93 35 chr11 13976244 13977355 -107866501 - Lx8 LINE L1 -51 7422 6248 6 691 23 68 0 0 chr11 13977429 13977473 -107866383 + AT_rich Low_complexity Low_complexity 1 44 0 6 691 298 276 39 58 chr11 13977644 13977798 -107866058 - Lx9 LINE L1 -1685 5959 5809 6 691 1052 270 59 53 chr11 13977796 13978446 -107865410 + Lx7 LINE L1 5502 6188 -1508 6 691 211 203 0 42 chr11 13978447 13978519 -107865337 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 691 464 344 96 60 chr11 13978575 13978993 -107864863 + Lx7 LINE L1 6234 6666 -807 6 691 459 35 0 0 chr11 13979092 13979149 -107864707 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 691 323 292 106 26 chr11 13979592 13979856 -107864000 + L1M4c LINE L1 1387 1671 -4713 6 691 427 316 31 58 chr11 13979964 13980189 -107863667 - L1M2 LINE L1 -2951 3192 2974 6 691 251 343 52 29 chr11 13980193 13980367 -107863489 + Lx9 LINE L1 6629 6806 -838 6 691 764 300 73 15 chr11 13980371 13980699 -107863157 + Lx9 LINE L1 6925 7271 -373 6 691 2142 91 15 15 chr11 13980704 13981039 -107862817 + RLTR9D LTR ERVK 1 335 -68 6 691 1395 116 21 25 chr11 13981029 13981268 -107862588 + RLTR9D LTR ERVK 166 403 0 6 691 395 316 32 6 chr11 13981271 13981427 -107862429 + Lx9 LINE L1 7274 7433 -211 6 691 21 36 0 0 chr11 13981525 13981553 -107862303 + AT_rich Low_complexity Low_complexity 1 28 0 6 691 258 32 0 0 chr11 13981636 13981667 -107862189 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 691 465 284 96 36 chr11 13981690 13981962 -107861894 + L1MB1 LINE L1 5653 5977 -191 6 691 409 325 11 11 chr11 13982200 13982374 -107861482 + GA-rich Low_complexity Low_complexity 4 177 0 6 691 12785 29 0 0 chr11 13982560 13984729 -107859127 - L1Md_T LINE L1 0 6582 4413 6 691 2269 109 8 62 chr11 13986432 13986802 -107857054 - RLTR10D LTR ERVK -9 350 1 6 691 902 199 119 0 chr11 13986913 13987114 -107856742 - URR1A DNA MER1_type 0 226 2 6 691 296 375 8 0 chr11 13988165 13988285 -107855571 + ID_B1 SINE B4 95 215 -9 6 691 404 294 114 20 chr11 13988296 13988445 -107855411 + RSINE1 SINE B4 3 165 0 6 691 23 33 0 0 chr11 13988467 13988497 -107855359 + AT_rich Low_complexity Low_complexity 1 30 0 6 691 2777 111 64 18 chr11 13989192 13989642 -107854214 - RLTR31B_Mm LTR ERVK -86 471 1 6 691 258 32 0 0 chr11 13989843 13989874 -107853982 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 691 191 61 30 0 chr11 13989917 13989950 -107853906 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 691 546 95 35 0 chr11 13989957 13990073 -107853783 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 6 691 1003 284 74 37 chr11 13990121 13990556 -107853300 + Lx9 LINE L1 6991 7441 -203 6 691 283 63 47 71 chr11 13991246 13991331 -107852525 + T-rich Low_complexity Low_complexity 3 85 0 6 691 575 100 19 48 chr11 13991462 13991567 -107852289 - URR1B DNA MER1_type -6 219 118 6 691 429 247 11 0 chr11 13992051 13992144 -107851712 - ORR1E LTR MaLR -235 124 31 6 691 483 69 0 0 chr11 13992701 13992773 -107851083 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 691 1427 293 30 60 chr11 13992814 13993381 -107850475 + L1_Mur3 LINE L1 276 825 -6903 6 691 286 148 16 0 chr11 13993386 13993447 -107850409 + L1_Mur3 LINE L1 3228 3289 -2591 6 691 4646 196 65 10 chr11 13993450 13994572 -107849284 + L1_Mur3 LINE L1 3446 4629 -1251 6 691 2946 92 0 5 chr11 13994580 13994996 -107848860 + BGLII LTR ERVK 1 414 -7 6 691 329 0 24 0 chr11 13994996 13995037 -107848819 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 691 405 0 0 0 chr11 13995037 13995081 -107848775 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 691 315 0 0 0 chr11 13995101 13995136 -107848720 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 691 216 97 0 0 chr11 13995180 13995211 -107848645 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 691 1864 214 83 35 chr11 13995216 13995727 -107848129 + L1_Mur3 LINE L1 4736 5273 -607 6 691 1042 102 0 20 chr11 13995727 13995865 -107847991 + B1_Mus2 SINE Alu 1 137 -10 6 691 243 0 0 0 chr11 13995865 13995892 -107847964 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 691 1042 102 0 20 chr11 13995892 13995903 -107847953 + B1_Mus2 SINE Alu 138 147 0 6 691 1864 214 83 35 chr11 13995903 13995990 -107847866 + L1_Mur3 LINE L1 5274 5363 -517 6 691 18594 111 17 49 chr11 13995991 13998548 -107845308 + L1Md_F LINE L1 217 2738 -3145 6 691 832 93 0 0 chr11 13998548 13998666 -107845190 - B1_Mm SINE Alu -2 145 28 6 691 18594 111 17 49 chr11 13998666 14000000 -107843856 + L1Md_F LINE L1 2739 4055 -1828 6 691 10494 85 14 1 chr11 14000000 14001516 -107842340 + L1Md_F2 LINE L1 4056 5592 -291 1 691 6689 101 4 4 chr11 14001516 14002465 -107841391 + L1Md_F2 LINE L1 5631 6579 -3 1 691 4216 231 49 21 chr11 14002469 14003223 -107840633 + Lx7 LINE L1 5351 6072 -1624 2 691 1366 83 108 0 chr11 14003223 14003427 -107840429 + L1_Mus2 LINE L1 6341 6566 0 3 691 4216 261 93 40 chr11 14003427 14004432 -107839424 + Lx7 LINE L1 6073 7197 -499 2 691 5194 159 61 4 chr11 14005071 14006070 -107837786 - Lx LINE L1 -24 5859 4804 4 691 1293 113 5 0 chr11 14006070 14006274 -107837582 + Lx LINE L1 5859 6063 -591 4 691 237 139 0 0 chr11 14006274 14006310 -107837546 + U2 snRNA snRNA 1 36 -152 5 691 1444 129 13 21 chr11 14006310 14006547 -107837309 + Lx LINE L1 6053 6287 -367 4 691 625 118 0 40 chr11 14006550 14006674 -107837182 + Lx LINE L1 6536 6654 0 4 691 21 0 0 0 chr11 14007672 14007693 -107836163 + AT_rich Low_complexity Low_complexity 1 21 0 6 691 240 167 0 0 chr11 14007797 14007845 -107836011 + T-rich Low_complexity Low_complexity 1 48 0 7 691 320 317 99 15 chr11 14008137 14008645 -107835211 + L1M5 LINE L1 5275 5829 -411 8 691 327 307 21 35 chr11 14008782 14008924 -107834932 + MLT2B3 LTR ERVL 1 140 -414 9 691 1088 205 235 31 chr11 14009085 14009468 -107834388 + RMER6B LTR ERVK 1 461 0 1 691 243 0 0 0 chr11 14010602 14010629 -107833227 + (T)n Simple_repeat Simple_repeat 1 27 0 1 691 788 27 54 0 chr11 14012006 14012118 -107831738 - L1Md_F3 LINE L1 -14 6570 6453 1 691 1022 309 83 130 chr11 14012148 14012675 -107831181 + MTD-int LTR MaLR 311 780 -478 1 691 342 0 0 0 chr11 14012675 14012713 -107831143 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 691 1022 309 83 130 chr11 14012713 14013176 -107830680 + MTD-int LTR MaLR 781 1254 -4 1 691 1049 289 120 8 chr11 14013184 14013543 -107830313 + MTD LTR MaLR 5 403 -16 1 691 369 349 77 40 chr11 14013594 14013677 -107830179 + L1M2 LINE L1 4963 5051 -1092 1 691 1939 191 48 0 chr11 14013677 14014053 -107829803 - ORR1B1 LTR MaLR 0 394 1 1 691 369 349 77 40 chr11 14014053 14014321 -107829535 + L1M2 LINE L1 5052 5326 -817 1 691 808 264 68 7 chr11 14014334 14014613 -107829243 + Lx7 LINE L1 5781 6076 -1620 1 691 1066 214 60 120 chr11 14014618 14014969 -107828887 - RLTR31_Mur LTR ERVK 0 553 224 1 691 2079 265 72 40 chr11 14014977 14015070 -107828786 + Lx7 LINE L1 6090 6193 -1503 1 691 506 43 14 0 chr11 14015070 14015139 -107828717 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 691 2079 265 72 40 chr11 14015139 14015776 -107828080 + Lx7 LINE L1 6194 6843 -853 1 691 321 311 90 8 chr11 14016603 14016736 -107827120 + MuRRS4-int LTR ERV1 2734 2877 -4729 2 691 428 333 52 67 chr11 14017117 14017173 -107826683 + MuRRS4-int LTR ERV1 3362 3408 -4148 2 691 1615 26 0 30 chr11 14017173 14017370 -107826486 + B2_Mm1a SINE B2 1 191 -2 2 691 547 318 46 53 chr11 14017370 14017915 -107825941 + MuRRS4-int LTR ERV1 2296 2649 -2414 2 691 4939 88 0 6 chr11 14018184 14018850 -107825006 + L1Md_F2 LINE L1 5907 6568 -14 2 691 8304 129 20 16 chr11 14019120 14020097 -107823759 - L1_Mur1 LINE L1 -2647 3239 2262 2 691 449 17 0 17 chr11 14020097 14020156 -107823700 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 2 691 8304 129 20 16 chr11 14020156 14020707 -107823149 - L1_Mur1 LINE L1 -3625 2261 1705 2 691 6922 83 7 2 chr11 14020706 14021835 -107822021 - L1_Mus2 LINE L1 0 6566 5432 2 86 36157 48 0 3 chr11 14021839 14028304 -107815552 - L1Md_T LINE L1 0 6585 44 2 692 23327 151 41 34 chr11 14028305 14033486 -107810370 - L1_Mus2 LINE L1 -437 5446 239 2 692 4720 153 35 5 chr11 14033491 14034799 -107809057 - L1_Mur1 LINE L1 -4169 1717 366 2 692 216 0 0 0 chr11 14034875 14034899 -107808957 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 692 427 188 18 0 chr11 14034899 14035011 -107808845 - RLTR42-int LTR ERVK -1627 3895 3782 2 692 2737 190 29 30 chr11 14035030 14035719 -107808137 - RLTR42-int LTR ERVK -1827 3695 3008 2 692 5985 169 8 55 chr11 14035735 14037028 -107806828 - RLTR42-int LTR ERVK -2494 3028 1797 2 692 1250 240 22 58 chr11 14037072 14037431 -107806425 - RLTR42-int LTR ERVK -3727 1795 1450 2 692 1036 151 12 0 chr11 14037431 14037603 -107806253 + B2_Mm2 SINE B2 3 176 -19 2 692 6535 132 25 9 chr11 14037610 14037709 -107806147 + Lx2 LINE L1 5930 6028 -969 3 692 267 31 0 0 chr11 14037709 14037741 -107806115 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 3 692 6535 132 25 9 chr11 14037741 14038692 -107805164 + Lx2 LINE L1 6029 6996 -1 3 692 2530 176 19 25 chr11 14038699 14039218 -107804638 - RLTR42-int LTR ERVK -4057 1465 950 2 692 23 0 0 0 chr11 14039218 14039241 -107804615 + AT_rich Low_complexity Low_complexity 1 23 0 3 692 1545 181 54 93 chr11 14039241 14039650 -107804206 + RLTR9C LTR ERVK 1 393 0 3 692 357 24 0 0 chr11 14039650 14039692 -107804164 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 3 692 1105 82 0 0 chr11 14039692 14039827 -107804029 - B1_Mm SINE Alu -12 135 1 3 692 6882 74 19 2 chr11 14039832 14040529 -107803327 - L1_Mus1 LINE L1 0 6567 5866 3 692 284 64 21 0 chr11 14040529 14040576 -107803280 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 692 6882 80 29 1 chr11 14040576 14041023 -107802833 - L1_Mus1 LINE L1 -702 5865 5395 3 692 611 232 18 18 chr11 14041042 14041213 -107802643 - RLTR42-int LTR ERVK -4593 929 759 2 692 251 250 0 62 chr11 14041289 14041370 -107802486 + L1M2 LINE L1 5436 5511 -789 3 692 57 0 0 0 chr11 14042237 14042294 -107801562 + AT_rich Low_complexity Low_complexity 1 57 0 3 692 1248 319 6 6 chr11 14043234 14043720 -107800136 - RNERVK23-int LTR ERVK -491 7726 7241 4 692 251 326 28 28 chr11 14044612 14044757 -107799099 - RNERVK23-int LTR ERVK -1880 6337 6193 4 692 3015 77 11 13 chr11 14046433 14046906 -107796950 - ETnERV2-int LTR ERVK -4205 3201 2730 4 692 334 309 23 42 chr11 14047167 14047427 -107796429 - RLTR45-int LTR ERVK -6806 438 184 4 692 883 286 131 18 chr11 14048588 14049030 -107794826 - RMER5 LTR ERV1 0 534 43 4 692 387 372 81 0 chr11 14049229 14049401 -107794455 - MTE-int LTR MaLR -475 1105 920 4 692 534 319 72 29 chr11 14049482 14049881 -107793975 + Lx8 LINE L1 6587 7021 -452 4 692 21 57 0 0 chr11 14051112 14051147 -107792709 + AT_rich Low_complexity Low_complexity 1 35 0 4 692 530 138 0 35 chr11 14053464 14053577 -107790279 + L1_Mus4 LINE L1 6527 6635 -1 4 692 1504 172 56 25 chr11 14053915 14054272 -107789584 - Lx LINE L1 -6 6648 6281 4 692 4277 134 8 63 chr11 14056133 14056944 -107786912 - RMER17A LTR ERVK 0 751 1 4 692 198 317 17 0 chr11 14058674 14058734 -107785122 - MIR SINE MIR -109 153 93 5 692 405 0 0 0 chr11 14058869 14058914 -107784942 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 692 1077 140 0 0 chr11 14058914 14059092 -107784764 + (GGAGA)n Simple_repeat Simple_repeat 2 179 0 5 692 242 264 13 65 chr11 14059530 14059607 -107784249 - ID4_ SINE ID -9 74 2 5 692 396 315 0 0 chr11 14060136 14060244 -107783612 + ORR1E LTR MaLR 10 117 -242 5 692 306 194 0 0 chr11 14060426 14060498 -107783358 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 692 263 236 21 11 chr11 14060629 14060680 -107783176 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 692 243 0 0 0 chr11 14060680 14060707 -107783149 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 5 692 263 236 21 11 chr11 14060707 14060749 -107783107 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 692 328 16 82 0 chr11 14060830 14060891 -107782965 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 692 535 270 139 21 chr11 14061643 14061857 -107781999 - B3A SINE B2 0 216 2 6 692 356 335 105 20 chr11 14062730 14062882 -107780974 - LTR80B LTR ERVL -3 581 417 6 692 25 0 0 0 chr11 14063737 14063762 -107780094 + AT_rich Low_complexity Low_complexity 1 25 0 6 692 241 91 0 0 chr11 14064938 14064971 -107778885 - L1_Mur3 LINE L1 -776 5104 5072 6 692 2697 242 51 29 chr11 14064983 14065745 -107778111 + Lx6 LINE L1 6019 6797 -663 6 692 454 341 11 29 chr11 14066104 14066385 -107777471 + L1MA7 LINE L1 5650 5925 -366 6 692 217 312 15 15 chr11 14066701 14066766 -107777090 + B4 SINE B4 1 65 -227 6 692 449 262 77 14 chr11 14066782 14066925 -107776931 + RLTR18B LTR ERVK 21 172 -340 6 692 851 203 94 5 chr11 14066959 14067172 -107776684 - RLTR10D LTR ERVK -127 232 1 6 692 710 292 100 91 chr11 14067172 14067614 -107776242 + RLTR18B LTR ERVK 144 591 -25 6 692 332 316 69 46 chr11 14068673 14068889 -107774967 + L1M4 LINE L1 2732 2952 -3194 6 692 427 333 97 35 chr11 14068921 14069126 -107774730 + L1M4 LINE L1 2890 3110 -3033 6 692 381 43 0 0 chr11 14069126 14069173 -107774683 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 692 427 331 93 33 chr11 14069173 14069311 -107774545 + L1M4 LINE L1 3108 3260 -2886 6 692 342 0 0 0 chr11 14070751 14070789 -107773067 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 7 692 425 333 24 0 chr11 14070791 14070917 -107772939 - ID_B1 SINE B4 -12 212 84 7 692 817 264 25 15 chr11 14071087 14071287 -107772569 + B3 SINE B2 6 207 -9 7 692 1185 204 132 161 chr11 14071399 14072140 -107771716 + RMER6D LTR ERVK 1 720 0 7 692 348 133 0 0 chr11 14073242 14073302 -107770554 + (TATG)n Simple_repeat Simple_repeat 1 60 0 7 692 30 0 0 0 chr11 14073413 14073443 -107770413 + AT_rich Low_complexity Low_complexity 1 30 0 7 692 4944 121 8 29 chr11 14073555 14074348 -107769508 - Lx LINE L1 -8 6646 5871 7 692 483 313 20 13 chr11 14074673 14074825 -107769031 - RSINE1 SINE B4 -11 154 2 7 692 273 316 0 0 chr11 14074843 14074919 -107768937 + Tigger7 DNA MER2_type 2416 2491 0 7 692 375 279 11 73 chr11 14075776 14075967 -107767889 + ID_B1 SINE B4 1 223 -1 8 692 310 206 41 0 chr11 14076147 14076253 -107767603 - L1M3 LINE L1 -493 5681 5571 8 692 495 45 0 0 chr11 14076599 14076665 -107767191 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 692 377 202 12 0 chr11 14076681 14076765 -107767091 - L1M3 LINE L1 -751 5432 5348 8 692 621 97 0 0 chr11 14077457 14077560 -107766296 + (CA)n Simple_repeat Simple_repeat 2 104 0 8 692 247 231 15 0 chr11 14078177 14078242 -107765614 - L1M2 LINE L1 -389 5908 5843 8 692 821 292 108 69 chr11 14078541 14079034 -107764822 - MT2A LTR ERVL -21 512 1 8 692 201 259 0 18 chr11 14079227 14079282 -107764574 + CT-rich Low_complexity Low_complexity 1 54 0 8 692 1410 199 54 65 chr11 14080383 14080594 -107763262 + RMER17C LTR ERVK 1 212 -198 8 692 339 25 0 0 chr11 14080594 14080634 -107763222 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 692 1410 199 54 65 chr11 14080634 14080809 -107763047 + RMER17C LTR ERVK 213 382 -28 8 692 207 0 0 0 chr11 14081023 14081046 -107762810 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 8 692 236 178 40 27 chr11 14081743 14081818 -107762038 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 9 692 2529 126 8 12 chr11 14083817 14084219 -107759637 + MTB LTR MaLR 1 400 0 9 692 346 267 172 27 chr11 14084705 14085040 -107758816 - L1MC1 LINE L1 -1757 6028 5640 9 692 507 80 27 0 chr11 14085043 14085118 -107758738 - Lx2 LINE L1 -1125 5872 5796 9 692 2691 132 6 50 chr11 14085141 14085618 -107758238 + Lx2 LINE L1 6536 6991 -6 9 692 670 325 102 23 chr11 14087989 14088604 -107755252 - L1_Mur3 LINE L1 -121 5759 5096 9 692 455 257 58 14 chr11 14088604 14088742 -107755114 + MTC LTR MaLR 1 144 -277 9 692 1715 129 66 0 chr11 14088756 14089043 -107754813 - RLTR31A_Mm LTR ERVK -278 306 1 9 692 301 325 63 19 chr11 14089118 14089325 -107754531 - L1M2 LINE L1 -2332 3811 3596 9 692 183 156 0 0 chr11 14089381 14089413 -107754443 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9 692 7420 34 1 1 chr11 14090589 14091480 -107752376 - L1Md_T LINE L1 0 6582 5691 1 692 685 284 67 15 chr11 14092068 14092316 -107751540 - MTD LTR MaLR 0 379 104 1 692 294 250 25 82 chr11 14092409 14092531 -107751325 - L1MDb LINE L1 -6275 134 20 1 692 446 357 44 6 chr11 14092704 14093025 -107750831 - L1MC1 LINE L1 -100 6233 5901 1 692 4543 178 28 48 chr11 14093630 14094539 -107749317 - RMER19B LTR ERVK -12 890 1 1 692 1233 262 16 22 chr11 14094810 14095126 -107748730 + Lx7 LINE L1 6883 7196 -500 1 692 1461 238 131 7 chr11 14095126 14095537 -107748319 + RMER19B LTR ERVK 439 900 -2 1 692 1266 228 93 78 chr11 14095537 14095849 -107748007 + Lx7 LINE L1 7228 7549 -147 1 692 386 20 0 19 chr11 14095849 14095901 -107747955 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 1 692 1266 228 93 78 chr11 14095901 14096050 -107747806 + Lx7 LINE L1 7550 7695 -1 1 692 6345 119 34 64 chr11 14096055 14097191 -107746665 + Lx3_Mus LINE L1 5899 7000 -9 1 692 389 20 20 0 chr11 14099632 14099682 -107744174 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 692 605 280 62 21 chr11 14100141 14100382 -107743474 + RMER15 LTR ERVL 312 562 -13 1 692 224 244 76 13 chr11 14100553 14100632 -107743224 + PB1D9 SINE Alu 36 119 -1 1 692 1076 241 25 0 chr11 14100661 14100897 -107742959 + Lx7 LINE L1 6815 7056 -640 1 692 218 268 0 0 chr11 14100956 14101012 -107742844 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1 692 1044 296 117 32 chr11 14101025 14101614 -107742242 + Lx6 LINE L1 6822 7460 0 1 692 400 219 80 21 chr11 14101716 14101903 -107741953 - Lx9 LINE L1 -3 7641 7444 1 692 230 182 90 13 chr11 14103889 14103967 -107739889 - L1M1 LINE L1 -423 5880 5797 1 692 288 0 0 0 chr11 14103968 14104000 -107739856 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 692 498 17 0 0 chr11 14104000 14104058 -107739798 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 692 27009 162 39 34 chr11 14104153 14105813 -107738043 + L1Md_F LINE L1 387 2070 -3813 1 692 288 0 0 0 chr11 14105813 14105845 -107738011 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 692 27009 136 13 28 chr11 14105845 14109720 -107734136 + L1Md_F LINE L1 2071 5874 -9 1 692 3923 75 4 8 chr11 14109722 14110249 -107733607 + L1Md_F2 LINE L1 6046 6570 -12 1 692 4763 91 6 29 chr11 14110249 14110938 -107732918 + L1_Mus2 LINE L1 5893 6565 -1 1 692 31224 81 10 23 chr11 14111613 14116051 -107727805 + L1Md_F LINE L1 511 4876 -1007 1 692 3764 44 0 2 chr11 14116051 14116511 -107727345 - L1Md_T LINE L1 -2 6580 6122 1 692 31224 75 3 11 chr11 14116511 14117098 -107726758 + L1Md_F LINE L1 4877 5474 -409 1 692 423 0 0 0 chr11 14117101 14117148 -107726708 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 692 500 330 29 11 chr11 14117808 14118087 -107725769 + L1MC LINE L1 2566 2849 -3297 1 692 621 287 21 42 chr11 14118089 14118278 -107725578 - B3 SINE B2 -9 186 2 1 692 678 97 0 0 chr11 14118306 14118419 -107725437 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 1 692 283 286 130 16 chr11 14118422 14118607 -107725249 + L1MC LINE L1 2887 3092 -3054 1 692 382 274 26 0 chr11 14119398 14119511 -107724345 + L1MC3 LINE L1 6758 6873 -912 1 692 608 277 146 0 chr11 14119537 14119743 -107724113 - Lx3C LINE L1 -3 6973 6738 1 692 358 344 139 26 chr11 14119893 14120362 -107723494 + L1MC3 LINE L1 7021 7542 -243 1 692 24 0 0 0 chr11 14120695 14120719 -107723137 + AT_rich Low_complexity Low_complexity 1 24 0 1 692 201 147 0 0 chr11 14122028 14122062 -107721794 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1 692 517 314 22 7 chr11 14122510 14122648 -107721208 + RSINE1 SINE B4 14 153 -12 1 692 485 364 24 12 chr11 14122649 14122816 -107721040 - B4A SINE B4 -123 169 1 1 692 519 312 211 39 chr11 14122820 14123496 -107720360 - L1MCa LINE L1 -4268 2240 1449 1 692 2975 90 2 0 chr11 14123515 14123914 -107719942 - MTB LTR MaLR 0 400 1 1 692 3778 78 4 0 chr11 14124147 14124647 -107719209 - L1_Mus1 LINE L1 -3 6564 6063 1 692 210 216 0 0 chr11 14125373 14125410 -107718446 + polypyrimidine Low_complexity Low_complexity 1 37 0 1 692 393 22 0 0 chr11 14125490 14125536 -107718320 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1 692 453 81 0 0 chr11 14126915 14126977 -107716879 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 1 692 441 66 0 0 chr11 14127875 14127936 -107715920 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 692 387 41 0 0 chr11 14127971 14128020 -107715836 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 692 399 145 0 0 chr11 14128167 14128236 -107715620 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 692 460 315 38 22 chr11 14128372 14128557 -107715299 + RMER30 DNA MER1_type 8 195 -7 1 692 1173 131 0 6 chr11 14128860 14129037 -107714819 - B2_Mm2 SINE B2 -19 176 1 1 692 272 346 146 0 chr11 14129213 14129343 -107714513 + Lx8 LINE L1 7186 7334 -139 1 692 328 198 68 23 chr11 14129871 14129959 -107713897 + B2_Mm2 SINE B2 98 189 -6 1 692 467 335 23 29 chr11 14131190 14131222 -107712634 + B3A SINE B2 7 38 -160 1 692 843 86 0 0 chr11 14131222 14131339 -107712517 + (CTATA)n Simple_repeat Simple_repeat 4 120 0 1 692 467 335 23 29 chr11 14131339 14131478 -107712378 + B3A SINE B2 39 177 -21 1 692 1277 269 44 44 chr11 14132099 14132484 -107711372 - MTD LTR MaLR 0 419 35 1 692 332 300 18 130 chr11 14132426 14132486 -107711370 + CYRA11_Mm Unknown Y-chromosome 125 239 -378 1 692 689 201 26 7 chr11 14132486 14132641 -107711215 - URR1B DNA MER1_type 0 225 68 1 692 332 300 18 130 chr11 14132641 14132710 -107711146 + CYRA11_Mm Unknown Y-chromosome 240 376 -241 1 692 183 235 0 0 chr11 14132862 14132913 -107710943 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 692 1195 138 16 5 chr11 14133587 14133777 -107710079 + B2_Mm2 SINE B2 1 192 -3 1 692 3207 51 10 0 chr11 14134583 14134975 -107708881 + MTA_Mm LTR MaLR 1 396 0 1 692 951 182 91 23 chr11 14135206 14135425 -107708431 + ORR1D1 LTR MaLR 1 234 -140 1 692 240 130 0 0 chr11 14135711 14135757 -107708099 + (T)n Simple_repeat Simple_repeat 1 46 0 1 692 1099 102 0 0 chr11 14135757 14135904 -107707952 - B1_Mus1 SINE Alu 0 148 2 1 692 201 298 43 97 chr11 14135943 14136036 -107707820 + L2 LINE L2 2757 2844 -575 1 692 762 203 60 0 chr11 14136389 14136571 -107707285 - B2_Mm2 SINE B2 -1 194 2 1 692 28 91 0 0 chr11 14136576 14136653 -107707203 + AT_rich Low_complexity Low_complexity 1 77 0 1 692 3177 43 28 2 chr11 14136653 14137048 -107706808 - L1Md_F2 LINE L1 -14 6568 6164 1 692 11504 179 55 104 chr11 14137067 14139891 -107703965 - Lx3A LINE L1 -35 6946 4613 1 692 2776 137 66 24 chr11 14139891 14140393 -107703463 + Lx LINE L1 6127 6649 -5 1 692 16164 116 16 192 chr11 14140393 14142240 -107701616 - Lx3A LINE L1 -1220 4666 2814 1 692 243 0 0 0 chr11 14142240 14142267 -107701589 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 692 16164 122 28 173 chr11 14142267 14144914 -107698942 - Lx3A LINE L1 -3070 2816 906 1 692 365 0 22 0 chr11 14144914 14144959 -107698897 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 692 5263 183 134 5 chr11 14144959 14145725 -107698131 - Lx3A LINE L1 -6079 905 12 1 692 385 338 22 40 chr11 14146238 14146460 -107697396 - Lx9 LINE L1 -297 7347 7130 1 692 439 246 53 53 chr11 14146457 14146607 -107697249 + Lx5 LINE L1 6901 7050 0 1 692 324 155 0 0 chr11 14146687 14146758 -107697098 + CT-rich Low_complexity Low_complexity 2 72 0 1 692 25 0 0 0 chr11 14146844 14146869 -107696987 + AT_rich Low_complexity Low_complexity 1 25 0 1 692 220 234 0 15 chr11 14147710 14147775 -107696081 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 1 692 1272 87 0 21 chr11 14148268 14148457 -107695399 - B2_Mm2 SINE B2 -9 186 2 1 692 183 42 0 0 chr11 14148872 14148896 -107694960 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 692 361 295 94 24 chr11 14149778 14149948 -107693908 - Lx8 LINE L1 -130 7343 7162 1 692 1350 297 3 3 chr11 14149959 14150307 -107693549 + Lx8 LINE L1 6228 6575 -898 1 692 549 314 141 13 chr11 14150660 14151051 -107692805 - Looper DNA PiggyBac -108 1450 1010 1 692 557 314 45 4 chr11 14151074 14151343 -107692513 - L1MC1 LINE L1 -15 6318 6039 1 692 543 337 44 10 chr11 14151620 14152004 -107691852 - L1MC1 LINE L1 -715 5618 5222 1 692 318 292 79 14 chr11 14152166 14152305 -107691551 - Looper DNA PiggyBac -685 873 726 1 692 6091 142 7 6 chr11 14152486 14153443 -107690413 + RMER17B LTR ERVK 1 958 0 1 692 538 330 52 42 chr11 14153597 14153800 -107690056 + L1_Mur3 LINE L1 3227 3446 -2434 1 692 1175 48 0 20 chr11 14153800 14153949 -107689907 - B1_Mus1 SINE Alu -2 146 1 1 692 538 330 52 42 chr11 14153949 14154150 -107689706 + L1_Mur3 LINE L1 3447 3635 -2245 1 692 994 340 38 58 chr11 14154336 14154939 -107688917 + Lx8 LINE L1 6117 6707 -766 1 692 264 253 25 12 chr11 14154980 14155060 -107688796 + Lx8 LINE L1 6703 6783 -690 1 692 1074 188 17 17 chr11 14155093 14155331 -107688525 - Lx2 LINE L1 -1 6996 6759 1 86 5300 151 48 12 chr11 14155326 14155966 -107687890 - Lx2 LINE L1 -432 6565 5897 1 693 663 48 0 0 chr11 14155966 14156049 -107687807 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 693 5300 184 38 12 chr11 14156049 14157083 -107686773 - Lx2 LINE L1 -1101 5896 4840 1 693 237 98 0 0 chr11 14157083 14157124 -107686732 + (T)n Simple_repeat Simple_repeat 1 41 0 1 693 627 316 66 21 chr11 14157140 14157473 -107686383 + Lx8 LINE L1 6782 7129 -344 1 693 534 232 40 104 chr11 14157480 14157682 -107686174 - RLTR16 LTR ERVK -311 194 6 1 693 360 0 0 0 chr11 14157684 14157724 -107686132 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 693 430 184 0 0 chr11 14157826 14157902 -107685954 + L1VL4 LINE L1 39 114 -6188 1 693 427 97 15 5 chr11 14157902 14157988 -107685868 + L1_Mur1 LINE L1 4928 5004 -873 1 693 1952 160 34 4 chr11 14157987 14158433 -107685423 + Lx2A LINE L1 5458 5921 -1087 1 693 337 311 76 35 chr11 14159227 14159518 -107684338 + L1M3 LINE L1 4807 5113 -1033 1 693 252 398 28 0 chr11 14160052 14160160 -107683696 + PB1D10 SINE Alu 6 116 -1 1 693 381 210 40 0 chr11 14160241 14160341 -107683515 + L1MA8 LINE L1 6184 6287 -4 1 693 21 0 0 0 chr11 14160735 14160756 -107683100 + AT_rich Low_complexity Low_complexity 1 21 0 1 693 203 237 0 0 chr11 14161651 14161689 -107682167 + polypyrimidine Low_complexity Low_complexity 1 38 0 1 693 378 0 0 0 chr11 14162634 14162676 -107681180 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 693 2470 218 34 46 chr11 14163501 14164068 -107679788 - RLTR20B2 LTR ERVK 0 560 1 1 693 225 0 0 0 chr11 14164550 14164575 -107679281 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 693 983 188 140 43 chr11 14164575 14164875 -107678981 + IAPEY3_LTR LTR ERVK 4 332 0 1 693 1821 113 115 122 chr11 14164875 14165300 -107678556 + MMERVK10C-int LTR ERVK 1 422 -7159 1 693 855 124 7 0 chr11 14165403 14165540 -107678316 + MMERVK10C-int LTR ERVK 708 845 -6736 1 693 767 217 97 0 chr11 14165517 14165692 -107678164 + IAPEz-int LTR ERVK 312 503 -4903 1 693 610 225 238 17 chr11 14165660 14165895 -107677961 + RLTR19-int LTR ERVK 376 662 -5475 2 693 264 186 0 0 chr11 14165890 14165933 -107677923 + RLTR19-int LTR ERVK 950 992 -995 2 693 373 140 0 0 chr11 14166124 14166181 -107677675 + IAPEz-int LTR ERVK 447 503 -6039 1 693 1397 133 107 0 chr11 14166181 14166406 -107677450 + IAPEz-int LTR ERVK 5007 5255 -1287 1 693 1490 132 97 27 chr11 14166406 14166723 -107677133 + IAPEY3-int LTR ERVK 6965 7338 -342 2 693 1415 189 55 17 chr11 14166740 14167084 -107676772 + IAPEz-int LTR ERVK 6125 6481 0 1 693 1022 218 133 40 chr11 14167084 14167385 -107676471 + IAPEY3_LTR LTR ERVK 1 329 -3 1 693 678 130 0 0 chr11 14167385 14167493 -107676363 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 693 225 65 0 0 chr11 14167505 14167536 -107676320 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 693 697 55 0 27 chr11 14167553 14167665 -107676191 - L1Md_F2 LINE L1 -12 6570 6462 2 693 22 0 0 0 chr11 14167923 14167945 -107675911 + AT_rich Low_complexity Low_complexity 1 22 0 2 693 372 152 0 0 chr11 14168530 14168596 -107675260 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 693 2032 205 114 30 chr11 14169030 14169554 -107674302 + RMER4B LTR ERVK 17 584 -1 2 693 1142 244 84 71 chr11 14170346 14170726 -107673130 + Lx6 LINE L1 6892 7276 -184 2 693 540 244 37 120 chr11 14171423 14171614 -107672242 + L1VL1 LINE L1 221 395 -6027 2 693 391 259 44 24 chr11 14171672 14171841 -107672015 + L1_Mus2 LINE L1 526 818 -5801 2 693 28155 134 15 22 chr11 14171838 14176856 -107667000 + L1_Mus2 LINE L1 728 5711 -175 2 693 245 51 0 25 chr11 14176856 14176896 -107666960 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 693 28155 97 16 8 chr11 14176896 14177743 -107666113 + L1_Mus2 LINE L1 5712 6568 -1 2 693 987 118 14 0 chr11 14179565 14179709 -107664147 + B1_Mus1 SINE Alu 2 147 -1 2 693 189 74 0 0 chr11 14179714 14179741 -107664115 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 2 693 443 344 10 82 chr11 14180008 14180214 -107663642 - MTE2b LTR MaLR -17 362 172 2 693 5759 28 0 0 chr11 14180214 14180891 -107662965 - L1_Mm LINE L1 -860 5023 4347 2 693 434 69 0 0 chr11 14180878 14180936 -107662920 + L1_Mm LINE L1 5024 5081 -802 2 693 4839 18 0 0 chr11 14180936 14181492 -107662364 + L1Md_T LINE L1 5031 5586 -297 2 693 8420 34 0 0 chr11 14181492 14182488 -107661368 + L1Md_T LINE L1 5587 6582 0 2 693 450 351 16 36 chr11 14182496 14182688 -107661168 - MTE2b LTR MaLR -190 189 2 2 693 2320 254 85 14 chr11 14183353 14184049 -107659807 + Lx9 LINE L1 6894 7638 -6 2 693 333 68 0 0 chr11 14184153 14184197 -107659659 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2 693 425 352 33 6 chr11 14184405 14184585 -107659271 + MER70B LTR ERVL 24 208 -370 2 693 320 326 23 0 chr11 14185164 14185250 -107658606 - ID_B1 SINE B4 -55 169 82 2 693 402 21 0 0 chr11 14185707 14185754 -107658102 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 693 2356 119 65 8 chr11 14186391 14186835 -107657021 + L1_Mus3 LINE L1 6215 6638 0 2 693 180 77 0 0 chr11 14188160 14188186 -107655670 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 693 22 35 0 0 chr11 14188400 14188429 -107655427 + AT_rich Low_complexity Low_complexity 1 29 0 2 693 470 250 146 57 chr11 14188441 14188717 -107655139 - L1_Mus3 LINE L1 -38 7020 6605 2 693 7524 100 13 14 chr11 14188755 14190214 -107653642 - L1_Mus3 LINE L1 -1 6637 5189 2 693 15770 192 28 20 chr11 14190218 14193267 -107650589 - Lx4B LINE L1 -484 6574 3485 2 693 1167 117 0 0 chr11 14193267 14193447 -107650409 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 693 15770 184 19 22 chr11 14193447 14194296 -107649560 - Lx4B LINE L1 -2393 3484 2639 2 693 351 0 0 0 chr11 14194296 14194335 -107649521 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 693 15770 184 19 22 chr11 14194335 14194517 -107649339 - Lx4B LINE L1 -3239 2638 2457 2 693 595 87 93 25 chr11 14194517 14194635 -107649221 - L1_Mus4 LINE L1 -2 6634 6509 2 693 4949 87 0 0 chr11 14194635 14195289 -107648567 + L1_Mus4 LINE L1 5860 6513 -125 2 693 198 0 0 0 chr11 14195311 14195333 -107648523 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2 693 234 170 0 0 chr11 14195333 14195380 -107648476 - Lx4B LINE L1 -3420 2466 2420 2 693 1239 252 25 61 chr11 14195416 14195856 -107648000 - Lx4B LINE L1 -5794 1190 767 2 693 303 343 0 0 chr11 14196304 14196412 -107647444 + CT-rich Low_complexity Low_complexity 2 109 0 2 693 1746 232 17 5 chr11 14197223 14197639 -107646217 + MTC LTR MaLR 1 421 0 2 693 41 21 0 0 chr11 14197855 14197903 -107645953 + AT_rich Low_complexity Low_complexity 1 48 0 2 693 2919 199 77 17 chr11 14197935 14198575 -107645281 - RLTR33 LTR ERVK 0 678 1 2 693 3739 61 0 25 chr11 14198853 14199339 -107644517 + L1Md_F2 LINE L1 6097 6570 -12 2 693 21 36 0 0 chr11 14202037 14202065 -107641791 + AT_rich Low_complexity Low_complexity 1 28 0 2 693 432 314 67 20 chr11 14202069 14202368 -107641488 - Lx9 LINE L1 -49 7595 7283 2 693 1123 293 73 24 chr11 14202659 14203068 -107640788 + Lx6 LINE L1 7006 7434 -26 2 693 306 313 93 25 chr11 14203235 14203707 -107640149 + L1MD LINE L1 4793 5296 -850 2 693 261 309 29 29 chr11 14203946 14204116 -107639740 + L1M5 LINE L1 5635 5804 -360 2 693 976 259 80 86 chr11 14204206 14204621 -107639235 + MT2A LTR ERVL 1 530 -71 2 693 2593 51 39 0 chr11 14206373 14206706 -107637150 + ORR1A1 LTR MaLR 1 346 0 2 693 2317 283 110 31 chr11 14206730 14207735 -107636121 - Lx6 LINE L1 -780 6680 5596 2 693 2891 217 43 90 chr11 14207718 14208022 -107635834 - L1_Mur3 LINE L1 -2434 3446 3132 2 693 462 36 0 0 chr11 14208022 14208078 -107635778 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 693 2891 217 43 90 chr11 14208078 14208596 -107635260 - L1_Mur3 LINE L1 -2749 3131 2663 2 693 1920 151 25 0 chr11 14208596 14208915 -107634941 + ORR1A2 LTR MaLR 1 327 0 2 693 2891 217 43 90 chr11 14208915 14209144 -107634712 - L1_Mur3 LINE L1 -3218 2662 2445 2 693 338 250 63 44 chr11 14209347 14209506 -107634350 + L1MA6 LINE L1 5479 5640 -657 2 693 220 274 26 64 chr11 14209782 14209860 -107633996 + B3A SINE B2 8 82 -116 2 693 219 360 52 17 chr11 14209871 14209987 -107633869 + L2 LINE L2 2296 2415 -1004 2 693 5229 45 1 11 chr11 14210011 14210666 -107633190 - L1Md_F2 LINE L1 0 6582 5934 2 693 14687 53 1 0 chr11 14210666 14212615 -107631241 + L1Md_F2 LINE L1 4013 5963 -619 2 693 1411 257 6 0 chr11 14212780 14213095 -107630761 + Lx7 LINE L1 6431 6747 -949 2 693 1364 235 118 20 chr11 14213126 14213474 -107630382 + ORR1C2 LTR MaLR 3 384 0 2 693 1879 240 40 31 chr11 14213477 14213958 -107629898 + Lx7 LINE L1 6872 7356 -340 2 693 251 214 14 0 chr11 14213982 14214052 -107629804 + CT-rich Low_complexity Low_complexity 5 75 0 2 693 368 232 90 21 chr11 14214213 14214358 -107629498 + Lx7 LINE L1 7542 7696 0 2 693 466 363 7 0 chr11 14214417 14214552 -107629304 + RSINE1 SINE B4 2 137 -28 2 693 603 288 98 44 chr11 14214573 14214962 -107628894 + L1MA6 LINE L1 5676 6085 -215 2 693 27 49 0 0 chr11 14215147 14215188 -107628668 + AT_rich Low_complexity Low_complexity 1 41 0 2 693 282 327 48 36 chr11 14215772 14215937 -107627919 - MIRb SINE MIR -64 204 38 2 693 1753 220 39 0 chr11 14217160 14217519 -107626337 + Lx5 LINE L1 6167 6539 -511 2 693 1230 215 43 18 chr11 14217526 14217805 -107626051 + Lx5 LINE L1 6753 7038 -12 2 693 4227 43 49 2 chr11 14218365 14218897 -107624959 - L1Md_F2 LINE L1 -12 6570 6014 2 693 451 270 79 14 chr11 14219109 14219323 -107624533 - L1_Mur3 LINE L1 -3925 1955 1728 2 693 314 212 90 10 chr11 14219570 14219670 -107624186 + L1MEg LINE L1 1845 1952 -4132 2 693 357 186 0 0 chr11 14219670 14219740 -107624116 + A-rich Low_complexity Low_complexity 1 70 0 2 693 1430 258 38 96 chr11 14219880 14220351 -107623505 - Lx6 LINE L1 -27 7433 6990 2 693 816 268 92 12 chr11 14220494 14220743 -107623113 + B4A SINE B4 4 272 -20 2 693 21 82 0 0 chr11 14222417 14222466 -107621390 + AT_rich Low_complexity Low_complexity 1 49 0 2 693 32 0 0 0 chr11 14222682 14222714 -107621142 + AT_rich Low_complexity Low_complexity 1 32 0 2 693 4841 232 56 25 chr11 14223110 14224335 -107619521 - Lx5 LINE L1 -6 7044 5782 2 693 288 20 20 39 chr11 14224354 14224405 -107619451 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2 693 559 125 149 28 chr11 14224405 14224512 -107619344 - PB1D9 SINE Alu 0 120 1 2 693 11699 171 32 21 chr11 14224513 14225157 -107618699 - L1_Mur2 LINE L1 -92 5785 5160 2 693 306 0 0 0 chr11 14225157 14225191 -107618665 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 693 11699 171 32 21 chr11 14225191 14226832 -107617024 - L1_Mur2 LINE L1 -718 5159 3475 2 693 275 67 0 43 chr11 14226832 14226879 -107616977 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2 693 11699 171 32 21 chr11 14226879 14226977 -107616879 - L1_Mur2 LINE L1 -2403 3474 3377 2 693 1025 230 14 0 chr11 14227007 14227216 -107616640 - B3 SINE B2 -3 213 2 2 693 1222 155 0 0 chr11 14227384 14227610 -107616246 - L1_Mur2 LINE L1 -2507 3370 3145 2 693 12967 178 19 19 chr11 14227607 14230599 -107613257 + Lx LINE L1 3202 6199 -455 2 693 1341 179 25 4 chr11 14230598 14230878 -107612978 + Lx LINE L1 6369 6654 0 2 693 822 113 0 0 chr11 14230882 14231006 -107612850 + (GGGAA)n Simple_repeat Simple_repeat 4 127 0 2 693 2971 97 5 2 chr11 14231190 14231614 -107612242 - L1_Mus3 LINE L1 -1 6637 6213 2 693 381 190 0 0 chr11 14232887 14232987 -107610869 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 693 225 0 0 0 chr11 14232987 14233012 -107610844 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 693 237 119 0 0 chr11 14233850 14233892 -107609964 + (T)n Simple_repeat Simple_repeat 1 42 0 2 693 276 194 0 69 chr11 14234432 14234504 -107609352 + Lx7 LINE L1 6487 6553 -1143 2 693 640 322 133 48 chr11 14236031 14236406 -107607450 + MTD LTR MaLR 4 410 -9 2 693 225 0 0 0 chr11 14236982 14237007 -107606849 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 693 22 56 0 0 chr11 14238172 14238208 -107605648 + AT_rich Low_complexity Low_complexity 1 36 0 2 693 242 29 0 28 chr11 14239242 14239278 -107604578 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 693 270 395 56 76 chr11 14239306 14239637 -107604219 - ORR1D2 LTR MaLR -47 327 6 2 693 3216 135 27 2 chr11 14239640 14240195 -107603661 + L1_Mur2 LINE L1 2211 2779 -3098 2 693 17844 202 21 28 chr11 14240185 14241719 -107602137 - MusHAL1 LINE L1 -504 5382 3841 2 693 242 0 0 57 chr11 14241719 14241754 -107602102 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 693 17844 202 21 28 chr11 14241754 14242845 -107601011 - MusHAL1 LINE L1 -2046 3840 2814 2 693 180 77 0 0 chr11 14242845 14242871 -107600985 + (TTG)n Simple_repeat Simple_repeat 1 26 0 2 693 17844 203 21 28 chr11 14242871 14244468 -107599388 - MusHAL1 LINE L1 -3073 2813 1189 2 693 16641 126 7 4 chr11 14244464 14247909 -107595947 + L1_Mus3 LINE L1 3179 6635 -3 2 693 234 0 0 0 chr11 14247909 14247935 -107595921 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 2 693 803 179 12 0 chr11 14247936 14248109 -107595747 + GA-rich Low_complexity Low_complexity 4 178 0 2 693 4696 126 5 22 chr11 14248130 14248900 -107594956 + Lx3_Mus LINE L1 6242 6998 -11 2 693 221 200 24 36 chr11 14248930 14249013 -107594843 + T-rich Low_complexity Low_complexity 2 83 0 2 693 459 0 0 0 chr11 14249084 14249135 -107594721 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 693 1084 37 8 0 chr11 14249136 14249270 -107594586 - B1_Mus1 SINE Alu -12 136 2 2 693 249 295 140 7 chr11 14251585 14251735 -107592121 + Zaphod DNA Tip100 328 497 -3534 2 693 967 195 62 5 chr11 14251845 14252178 -107591678 - RLTR24 LTR ERV1 -108 421 1 2 693 1346 6 23 0 chr11 14252570 14252741 -107591115 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 2 693 1212 95 39 11 chr11 14252816 14252997 -107590859 - B2_Mm2 SINE B2 -9 186 1 2 693 245 346 69 8 chr11 14253272 14253403 -107590453 + Tigger5 DNA MER2_type 96 234 -2172 3 693 371 327 57 19 chr11 14254040 14254358 -107589498 + Zaphod DNA Tip100 3595 3924 -107 2 693 237 358 48 24 chr11 14254551 14254677 -107589179 - MLT1A0 LTR MaLR -169 196 68 3 693 755 320 78 12 chr11 14254856 14255356 -107588500 - L1M3 LINE L1 -1914 4226 3694 3 693 306 0 0 0 chr11 14255364 14255398 -107588458 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 693 906 111 74 0 chr11 14255398 14255533 -107588323 - B1_Mus2 SINE Alu -2 145 1 3 693 230 309 31 10 chr11 14255609 14255707 -107588149 + ORR1E LTR MaLR 260 359 0 3 693 593 314 6 0 chr11 14255953 14256122 -107587734 + Lx6 LINE L1 6563 6732 -728 3 693 24 0 0 0 chr11 14256442 14256466 -107587390 + AT_rich Low_complexity Low_complexity 1 24 0 3 693 185 0 40 0 chr11 14257370 14257395 -107586461 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 693 2765 84 44 8 chr11 14258155 14258541 -107585315 - MTB LTR MaLR 0 400 1 3 693 557 273 14 7 chr11 14259140 14259280 -107584576 - B1_Mur3 SINE Alu -3 146 6 3 693 871 319 64 30 chr11 14259390 14259750 -107584106 + MTE2b LTR MaLR 3 352 -7 3 693 309 118 0 0 chr11 14259750 14259801 -107584055 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 693 751 326 11 19 chr11 14259910 14260187 -107583669 - MTE-int LTR MaLR -1138 442 149 3 693 938 116 0 0 chr11 14260694 14260823 -107583033 + B1_Mus1 SINE Alu 15 143 -5 3 693 459 0 0 0 chr11 14260827 14260878 -107582978 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 3 693 311 250 56 93 chr11 14260878 14261094 -107582762 + L1MEf LINE L1 1102 1309 -5169 3 693 1100 92 40 0 chr11 14261391 14261565 -107582291 - L1_Mus3 LINE L1 -6 6632 6452 3 693 381 296 141 75 chr11 14261619 14261841 -107582015 + MTE2a LTR MaLR 11 213 -206 3 693 334 277 48 41 chr11 14262100 14262247 -107581609 + L1_Rod LINE L1 2269 2416 -3431 3 693 891 167 0 0 chr11 14262417 14262579 -107581277 + GA-rich Low_complexity Low_complexity 3 164 0 3 693 686 301 87 40 chr11 14262579 14263271 -107580585 + L1_Rod LINE L1 2608 3331 -2516 3 693 5908 42 10 1 chr11 14263272 14263993 -107579863 - L1Md_F3 LINE L1 -3 6581 5855 3 693 2955 62 0 30 chr11 14263993 14264389 -107579467 + L1Md_F3 LINE L1 5473 5856 -27 3 693 574 309 55 20 chr11 14264385 14264841 -107579015 + L1_Mur3 LINE L1 3305 3776 -2104 3 693 307 324 83 87 chr11 14264815 14264976 -107578880 + L1_Rod LINE L1 3954 4097 -1750 3 693 985 119 0 0 chr11 14264976 14265119 -107578737 - B1_Mus1 SINE Alu -5 143 1 3 693 660 295 153 32 chr11 14265119 14265872 -107577984 + L1M2 LINE L1 4115 4958 -1185 3 693 1142 320 73 22 chr11 14265874 14266408 -107577448 + Lx8 LINE L1 6549 7109 -364 3 693 239 308 37 37 chr11 14267429 14267537 -107576319 + L1MEf LINE L1 1783 1890 -4588 3 693 27 29 0 0 chr11 14267582 14267616 -107576240 + AT_rich Low_complexity Low_complexity 1 34 0 3 693 23 54 0 0 chr11 14267635 14267672 -107576184 + AT_rich Low_complexity Low_complexity 1 37 0 3 693 21 57 0 0 chr11 14267988 14268023 -107575833 + AT_rich Low_complexity Low_complexity 1 35 0 3 693 516 280 136 46 chr11 14268041 14268842 -107575014 + L1MEf LINE L1 2210 3096 -3280 3 693 288 0 0 0 chr11 14268842 14268874 -107574982 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 693 516 294 157 41 chr11 14268874 14268945 -107574911 + L1MEf LINE L1 3097 3170 -3206 3 693 216 86 0 0 chr11 14269073 14269108 -107574748 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 693 300 302 92 8 chr11 14269110 14269240 -107574616 + L1MEf LINE L1 3180 3320 -3059 3 693 630 0 0 0 chr11 14270515 14270585 -107573271 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 693 884 181 47 0 chr11 14270586 14270757 -107573099 - Lx2 LINE L1 0 6997 6819 3 693 555 16 0 0 chr11 14271853 14271917 -107571939 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 693 387 162 0 0 chr11 14271917 14272016 -107571840 + GA-rich Low_complexity Low_complexity 2 100 0 3 693 256 269 9 154 chr11 14272400 14272510 -107571346 + RSINE1 SINE B4 72 165 0 3 693 26 30 0 0 chr11 14272514 14272547 -107571309 + AT_rich Low_complexity Low_complexity 1 33 0 3 693 25 0 0 0 chr11 14272596 14272621 -107571235 + AT_rich Low_complexity Low_complexity 1 25 0 3 693 216 0 0 0 chr11 14272726 14272750 -107571106 + (T)n Simple_repeat Simple_repeat 1 24 0 3 693 270 0 0 0 chr11 14274593 14274623 -107569233 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 693 3382 43 7 2 chr11 14274769 14275189 -107568667 - L1Md_F3 LINE L1 -2 6582 6161 3 693 377 243 0 0 chr11 14275357 14275427 -107568429 - tRNA-Gly-GGG tRNA tRNA 0 74 5 3 693 3189 59 0 5 chr11 14275811 14276218 -107567638 - L1Md_F2 LINE L1 -3 6579 6175 3 693 1516 67 5 0 chr11 14276247 14276456 -107567400 + L1Md_F2 LINE L1 6372 6581 -1 3 693 270 284 33 22 chr11 14276772 14276862 -107566994 + LTR48B LTR ERV1 131 221 -423 3 693 1673 213 22 70 chr11 14277789 14278203 -107565653 - ORR1B1 LTR MaLR 0 394 1 3 693 309 68 0 0 chr11 14279596 14279640 -107564216 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 693 279 0 0 0 chr11 14280958 14280989 -107562867 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 693 1151 176 14 5 chr11 14281334 14281551 -107562305 - URR1A DNA MER1_type 0 226 8 3 693 452 303 91 63 chr11 14281564 14281776 -107562080 - L1_Rod LINE L1 -398 5449 5234 3 693 1014 113 0 0 chr11 14281776 14281917 -107561939 - B1_Mus1 SINE Alu -5 143 3 3 693 452 303 91 63 chr11 14281917 14282212 -107561644 - L1_Rod LINE L1 -614 5233 4928 3 693 371 340 65 65 chr11 14282281 14282542 -107561314 - Lx8 LINE L1 -103 7370 7110 3 693 2650 197 26 29 chr11 14282656 14283202 -107560654 + RMER19C LTR ERVK 1 611 0 3 693 23 68 0 0 chr11 14283411 14283455 -107560401 + AT_rich Low_complexity Low_complexity 1 44 0 3 693 253 47 23 23 chr11 14283508 14283552 -107560304 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 693 23 0 0 0 chr11 14285160 14285183 -107558673 + AT_rich Low_complexity Low_complexity 1 23 0 3 693 246 62 0 0 chr11 14285300 14285332 -107558524 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 693 4550 178 61 19 chr11 14285332 14286240 -107557616 - Lx4A LINE L1 -6 7052 6104 3 693 222 37 0 0 chr11 14286412 14286439 -107557417 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 694 474 18 0 0 chr11 14288089 14288144 -107555712 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 694 360 0 0 0 chr11 14288144 14288183 -107555673 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 694 757 295 24 14 chr11 14288373 14288583 -107555273 + B3 SINE B2 3 214 -2 3 694 23 0 0 0 chr11 14288702 14288725 -107555131 + AT_rich Low_complexity Low_complexity 1 23 0 3 694 925 285 48 3 chr11 14289662 14289951 -107553905 + Lx9 LINE L1 6672 6973 -671 3 694 32279 29 0 0 chr11 14289956 14294567 -107549289 - L1Md_T LINE L1 0 6582 1972 3 694 1715 252 81 10 chr11 14294568 14295065 -107548791 + Lx9 LINE L1 6959 7490 -154 3 694 195 129 0 0 chr11 14295067 14295098 -107548758 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 694 674 212 20 33 chr11 14295453 14295604 -107548252 - B1_Mur3 SINE Alu 0 149 1 3 694 234 0 0 0 chr11 14295694 14295720 -107548136 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 3 694 2519 81 66 18 chr11 14295784 14296176 -107547680 + RLTR10A LTR ERVK 1 411 0 3 694 406 264 74 19 chr11 14296588 14296696 -107547160 + RSINE1 SINE B4 11 124 -41 3 694 27 0 0 0 chr11 14296720 14296747 -107547109 + AT_rich Low_complexity Low_complexity 1 27 0 3 694 273 175 35 0 chr11 14296755 14296812 -107547044 + Lx9 LINE L1 7385 7443 -201 3 694 1736 296 46 34 chr11 14297058 14297941 -107545915 + Lx6 LINE L1 6242 7434 -26 3 694 225 216 76 25 chr11 14297942 14298061 -107545795 + Lx9 LINE L1 7520 7644 0 3 694 282 225 117 22 chr11 14298075 14298173 -107545683 - B1_Mur1 SINE Alu -8 141 3 3 694 252 0 0 0 chr11 14298300 14298328 -107545528 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 694 6953 139 49 18 chr11 14298496 14300231 -107543625 - Lx3_Mus LINE L1 0 7009 5224 3 694 2103 183 34 10 chr11 14301380 14301793 -107542063 + Lx4B LINE L1 5867 6289 -769 3 694 412 167 0 0 chr11 14301796 14301874 -107541982 + Lx3B LINE L1 6896 6973 0 3 694 316 286 137 105 chr11 14301993 14302337 -107541519 + L1MC LINE L1 3843 4197 -1949 3 694 1396 202 68 80 chr11 14303011 14303410 -107540446 - ORR1B1 LTR MaLR 0 394 1 3 694 2447 276 140 81 chr11 14303410 14304063 -107539793 - ORR1B1-int LTR MaLR 0 1370 723 3 694 3618 127 43 0 chr11 14304063 14304639 -107539217 - MT2B LTR ERVL 0 601 1 3 694 2447 276 140 81 chr11 14304639 14305279 -107538577 - ORR1B1-int LTR MaLR -648 722 2 3 694 1201 207 153 74 chr11 14305279 14305644 -107538212 - ORR1B1 LTR MaLR 0 394 1 3 694 270 0 0 0 chr11 14306005 14306035 -107537821 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 694 1030 90 7 7 chr11 14306683 14306829 -107537027 - B1_Mus1 SINE Alu -1 147 2 3 694 36 62 0 0 chr11 14306832 14306896 -107536960 + AT_rich Low_complexity Low_complexity 1 64 0 3 694 1943 208 18 43 chr11 14306999 14307395 -107536461 - ORR1B1 LTR MaLR -8 386 1 3 694 242 253 84 48 chr11 14307395 14307478 -107536378 - B2_Mm2 SINE B2 -107 88 3 3 694 268 269 162 9 chr11 14308669 14308774 -107535082 + ID_B1 SINE B4 78 198 -26 3 694 420 256 57 79 chr11 14308685 14308825 -107535031 + B1_Mur1 SINE Alu 13 149 0 3 694 243 88 0 0 chr11 14308840 14308874 -107534982 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 3 694 277 333 108 0 chr11 14309020 14309113 -107534743 - ID_B1 SINE B4 -32 192 90 3 694 369 0 0 0 chr11 14309993 14310034 -107533822 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 694 573 361 42 19 chr11 14310036 14310296 -107533560 - B4A SINE B4 -23 269 4 3 694 225 24 0 67 chr11 14311002 14311047 -107532809 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 694 24 32 0 0 chr11 14311448 14311479 -107532377 + AT_rich Low_complexity Low_complexity 1 31 0 3 694 201 158 0 0 chr11 14311535 14311573 -107532283 + T-rich Low_complexity Low_complexity 1 38 0 3 694 294 42 21 0 chr11 14311574 14311622 -107532234 - B1_Mur4 SINE Alu 0 150 102 3 694 631 222 29 35 chr11 14311904 14312049 -107531807 + B1_Mus1 SINE Alu 2 147 -1 3 694 337 15 44 44 chr11 14312049 14312117 -107531739 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 3 694 1588 36 0 5 chr11 14312172 14312370 -107531486 + L1Md_F3 LINE L1 6372 6568 -16 3 694 1317 119 5 0 chr11 14312505 14312699 -107531157 + B2_Mm2 SINE B2 1 195 0 4 694 646 306 17 48 chr11 14312701 14312993 -107530863 + Lx9 LINE L1 6890 7172 -472 4 694 598 199 0 17 chr11 14313210 14313389 -107530467 + CT-rich Low_complexity Low_complexity 3 178 0 4 694 354 183 0 0 chr11 14313410 14313481 -107530375 + CT-rich Low_complexity Low_complexity 3 73 0 4 694 541 358 86 42 chr11 14313619 14314094 -107529762 - Lx8 LINE L1 -873 6600 6105 4 694 21 0 0 0 chr11 14314214 14314235 -107529621 + AT_rich Low_complexity Low_complexity 1 21 0 4 694 227 211 0 55 chr11 14314480 14314535 -107529321 - Lx8 LINE L1 -1580 5893 5842 4 694 543 303 0 35 chr11 14314539 14314741 -107529115 + Lx7 LINE L1 5634 5828 -1868 4 694 509 0 16 0 chr11 14314786 14314847 -107529009 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 4 694 986 111 0 0 chr11 14314847 14314982 -107528874 - B1_Mus1 SINE Alu -11 137 3 4 694 249 33 0 0 chr11 14316804 14316834 -107527022 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 694 241 380 6 12 chr11 14316851 14317024 -107526832 - Lx9 LINE L1 -206 7438 7267 4 694 1711 312 82 11 chr11 14317109 14317930 -107525926 - Lx8 LINE L1 -468 7005 6127 4 694 444 246 50 25 chr11 14319454 14319575 -107524281 + ORR1D2 LTR MaLR 196 319 -51 4 694 690 75 0 0 chr11 14319578 14319671 -107524185 + (GAAA)n Simple_repeat Simple_repeat 3 95 0 4 694 1019 125 0 0 chr11 14319816 14319960 -107523896 - B1_Mus1 SINE Alu 0 148 5 4 694 3120 194 78 16 chr11 14320166 14320848 -107523008 + Lx3A LINE L1 6251 6974 -7 4 694 5364 174 8 3 chr11 14322154 14323120 -107520736 - Lx2B LINE L1 -7 6993 6023 4 694 1081 149 5 24 chr11 14323195 14323401 -107520455 - L1VL1 LINE L1 -359 3339 3138 4 694 16096 127 16 4 chr11 14323655 14326972 -107516884 - L1_Mus3 LINE L1 -1 6637 3278 4 694 5661 127 12 28 chr11 14326966 14328760 -107515096 - L1VL1 LINE L1 -1752 1946 193 4 694 24 53 0 0 chr11 14329184 14329222 -107514634 + AT_rich Low_complexity Low_complexity 1 38 0 4 694 230 283 10 20 chr11 14329443 14329544 -107514312 + L1M4 LINE L1 5399 5498 -686 4 694 1099 109 0 0 chr11 14329569 14329716 -107514140 + B1_Mus1 SINE Alu 1 147 -1 4 694 185 0 0 39 chr11 14329721 14329747 -107514109 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 4 694 325 352 42 35 chr11 14329991 14330135 -107513721 + B3 SINE B2 71 215 -1 4 694 22 0 0 0 chr11 14330219 14330241 -107513615 + AT_rich Low_complexity Low_complexity 1 22 0 4 694 9994 22 1 0 chr11 14331963 14333812 -107510044 - L1Md_T LINE L1 0 6582 4732 4 694 429 337 23 60 chr11 14333913 14334128 -107509728 - RMER15 LTR ERVL -122 453 247 4 694 24 32 0 0 chr11 14334756 14334787 -107509069 + AT_rich Low_complexity Low_complexity 1 31 0 4 694 539 238 6 0 chr11 14335307 14335479 -107508377 + (ATG)n Simple_repeat Simple_repeat 2 174 0 4 694 218 322 0 17 chr11 14335513 14335573 -107508283 - RSINE1 SINE B4 -25 140 82 4 694 447 62 0 0 chr11 14335725 14335741 -107508115 + (TC)n Simple_repeat Simple_repeat 1 16 0 4 694 654 13 0 0 chr11 14335741 14335816 -107508040 + (TTC)n Simple_repeat Simple_repeat 3 77 0 4 694 447 62 0 0 chr11 14335816 14335864 -107507992 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 694 264 221 28 42 chr11 14335875 14335946 -107507910 - B4 SINE B4 -217 75 6 4 694 228 260 12 49 chr11 14336440 14336521 -107507335 + MLT1C LTR MaLR 1 78 -389 4 694 378 0 0 0 chr11 14336596 14336638 -107507218 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 694 762 177 20 13 chr11 14336638 14336787 -107507069 - B2_Mm2 SINE B2 -22 173 24 4 694 3088 161 38 126 chr11 14336782 14337542 -107506314 - RMER6A LTR ERVK -7 749 57 4 694 721 218 0 7 chr11 14340697 14340845 -107503011 - B1_Mm SINE Alu 0 147 1 4 694 252 0 0 0 chr11 14340852 14340880 -107502976 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 4 694 447 73 0 0 chr11 14340880 14340947 -107502909 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 694 440 340 46 10 chr11 14341345 14341541 -107502315 - MER82 DNA MER2_type -25 628 426 4 694 3186 18 68 0 chr11 14341596 14341981 -107501875 - IAPLTR2a LTR ERVK 0 411 1 4 694 5623 56 11 1 chr11 14341981 14342753 -107501103 - RLTR10-int LTR ERVK -269 1718 990 4 694 305 269 31 43 chr11 14342835 14342998 -107500858 - RLTR10-int LTR ERVK -5987 1594 1434 4 694 3521 57 11 2 chr11 14343042 14343501 -107500355 - RLTR10-int LTR ERVK -995 992 530 4 694 2097 65 29 3 chr11 14343623 14343930 -107499926 - RLTR10-int LTR ERVK -1381 606 292 4 694 2189 65 122 6 chr11 14343930 14344273 -107499583 - RLTR10 LTR ERVK -7 383 1 4 694 1799 136 27 0 chr11 14344273 14344567 -107499289 - Lx2A LINE L1 -45 6963 6662 4 694 1419 131 21 39 chr11 14344593 14344916 -107498940 - RMER17D2 LTR ERVK 0 906 556 4 694 2231 130 6 17 chr11 14344911 14344934 -107498922 - RMER17D2 LTR ERVK -462 347 326 4 694 539 29 0 14 chr11 14344934 14345004 -107498852 + (GGAGA)n Simple_repeat Simple_repeat 2 70 0 4 694 2231 130 6 17 chr11 14345004 14345331 -107498525 - RMER17D2 LTR ERVK -484 325 1 4 694 6686 150 21 5 chr11 14345331 14347290 -107496566 + Lx2A LINE L1 4677 6663 -345 4 694 355 356 121 31 chr11 14347291 14347517 -107496339 - MER82 DNA MER2_type -214 439 192 4 694 210 91 0 0 chr11 14347517 14347550 -107496306 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 694 355 356 121 31 chr11 14347550 14347613 -107496243 - MER82 DNA MER2_type -462 191 124 4 694 980 337 42 92 chr11 14348729 14349425 -107494431 - Tigger7 DNA MER2_type 0 705 19 4 694 2015 220 56 24 chr11 14349805 14350303 -107493553 - RMER5 LTR ERV1 -20 514 1 4 694 423 0 0 0 chr11 14350338 14350385 -107493471 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 694 7602 157 18 12 chr11 14350454 14352321 -107491535 + Lx4A LINE L1 5169 7056 -2 4 694 26 0 0 0 chr11 14352329 14352355 -107491501 + AT_rich Low_complexity Low_complexity 1 26 0 4 694 1746 92 4 0 chr11 14353679 14353917 -107489939 - L1_Mus1 LINE L1 -1 6566 6328 4 694 33045 80 3 8 chr11 14353919 14359887 -107483969 - L1Md_F2 LINE L1 -1 6581 652 4 694 27258 110 18 12 chr11 14359885 14365793 -107478063 - L1_Mus2 LINE L1 -224 6342 403 4 694 2425 131 39 2 chr11 14365997 14366403 -107477453 - BGLII LTR ERVK 0 421 1 4 694 229 286 62 78 chr11 14366785 14366914 -107476942 - ORR1D1 LTR MaLR -214 160 34 4 694 472 317 78 51 chr11 14367803 14368289 -107475567 - L1MA4 LINE L1 -455 5845 5347 4 694 303 259 121 18 chr11 14370036 14370201 -107473655 - L1MD LINE L1 -2278 5717 5536 4 694 1043 314 95 20 chr11 14370442 14370872 -107472984 - RLTR20C LTR ERVK 0 534 68 4 694 447 286 101 58 chr11 14370897 14371105 -107472751 - L1MC LINE L1 -888 5258 5042 4 694 744 333 66 63 chr11 14371106 14371455 -107472401 + ORR1E LTR MaLR 1 350 -9 4 694 3180 335 66 37 chr11 14371467 14372976 -107470880 + ORR1E-int LTR MaLR 1 1553 -27 4 694 2695 24 0 0 chr11 14372976 14373308 -107470548 - L1_Mm LINE L1 -636 5247 4916 4 694 7895 36 0 0 chr11 14373309 14374296 -107469560 - L1Md_A LINE L1 0 6582 5596 4 694 3917 29 0 0 chr11 14374294 14374777 -107469079 - L1Md_A LINE L1 -969 4914 4432 4 694 2760 21 0 0 chr11 14374775 14375109 -107468747 + L1Md_A LINE L1 5253 5586 -297 4 694 8212 41 0 1 chr11 14375109 14376106 -107467750 + L1Md_A LINE L1 5587 6582 0 4 694 2093 348 58 37 chr11 14376144 14376354 -107467502 - MTE2b-int LTR MaLR -594 986 769 4 694 898 210 120 0 chr11 14376354 14376554 -107467302 + URR1A DNA MER1_type 3 226 0 4 694 2093 348 58 37 chr11 14376554 14376872 -107466984 - MTE2b-int LTR MaLR -812 768 458 4 694 699 184 91 40 chr11 14376872 14377047 -107466809 - B2_Mm2 SINE B2 -10 185 2 4 694 2093 348 58 37 chr11 14377047 14377483 -107466373 - MTE2b-int LTR MaLR -1123 457 1 4 694 942 305 74 27 chr11 14377489 14377602 -107466254 - MTE2b LTR MaLR -26 353 227 4 694 2359 181 28 28 chr11 14377602 14378107 -107465749 + RLTR16 LTR ERVK 1 505 0 4 694 942 305 74 27 chr11 14378107 14378330 -107465526 - MTE2b LTR MaLR -153 226 1 4 694 311 313 167 23 chr11 14378805 14379021 -107464835 - L1MDb LINE L1 -5190 1219 973 4 694 207 79 0 73 chr11 14379095 14379136 -107464720 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 4 694 1431 216 67 31 chr11 14379516 14379875 -107463981 + ORR1C2 LTR MaLR 1 372 -12 4 694 211 231 65 28 chr11 14380052 14380159 -107463697 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 4 694 426 79 0 0 chr11 14380164 14380227 -107463629 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 694 1757 125 55 249 chr11 14380861 14381459 -107462397 + RLTR45 LTR ERVK 1 482 0 4 694 180 77 0 0 chr11 14383180 14383206 -107460650 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 4 694 308 319 70 9 chr11 14383435 14383549 -107460307 + HAL1-3A_ME LINE L1 2284 2404 -454 4 694 207 100 0 0 chr11 14384071 14384101 -107459755 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 694 192 48 71 0 chr11 14384984 14385026 -107458830 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 4 694 21 0 0 0 chr11 14385279 14385300 -107458556 + AT_rich Low_complexity Low_complexity 1 21 0 4 694 295 306 61 0 chr11 14385309 14385456 -107458400 - L1MB4 LINE L1 -50 6130 5975 4 694 214 148 31 47 chr11 14386791 14386855 -107457001 + T-rich Low_complexity Low_complexity 3 65 0 4 694 694 304 17 42 chr11 14387264 14387501 -107456355 + B4A SINE B4 1 231 -61 4 694 295 23 45 0 chr11 14388337 14388381 -107455475 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 694 520 274 140 73 chr11 14388491 14388833 -107455023 + RLTR9A LTR ERVK 1 365 -3 4 694 293 273 45 11 chr11 14388973 14389062 -107454794 - MER105 DNA DNA -22 182 91 4 694 23 0 0 0 chr11 14389142 14389165 -107454691 + AT_rich Low_complexity Low_complexity 1 23 0 4 694 982 86 7 0 chr11 14389228 14389368 -107454488 + L1_Mus1 LINE L1 6425 6565 -2 4 694 379 271 87 81 chr11 14389427 14389612 -107454244 + B3A SINE B2 3 188 -7 4 694 434 297 25 33 chr11 14389659 14389781 -107454075 + RSINE1 SINE B4 29 149 -16 4 694 267 31 0 0 chr11 14389783 14389815 -107454041 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 694 513 276 87 0 chr11 14389844 14389971 -107453885 - B3A SINE B2 -60 138 1 4 694 429 206 45 81 chr11 14390098 14390209 -107453647 - RLTR22_Mus LTR ERVK 0 1808 1702 4 694 7966 86 11 2 chr11 14390209 14391330 -107452526 - L1_Mm LINE L1 -828 5055 3925 4 694 4896 83 5 1 chr11 14391330 14391993 -107451863 + L1_Mus2 LINE L1 5902 6566 0 4 694 752 196 79 6 chr11 14392017 14392181 -107451675 - RLTR22_Mur LTR ERVK -83 1765 1590 4 694 989 185 33 41 chr11 14392405 14392648 -107451208 - RLTR22_Mur LTR ERVK -1043 805 565 4 694 1338 188 174 30 chr11 14392631 14392994 -107450862 - RLTR22_Mur LTR ERVK -1433 415 1 4 694 21 0 0 0 chr11 14394000 14394021 -107449835 + AT_rich Low_complexity Low_complexity 1 21 0 4 694 324 91 30 15 chr11 14394065 14394132 -107449724 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 694 230 348 37 28 chr11 14394420 14394636 -107449220 + L1ME3A LINE L1 5719 5936 -237 4 694 271 317 13 40 chr11 14394703 14394854 -107449002 - L2a LINE L2 -58 3368 3222 5 694 414 0 0 0 chr11 14394997 14395043 -107448813 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 694 207 88 0 0 chr11 14395305 14395339 -107448517 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 694 690 75 0 0 chr11 14395339 14395432 -107448424 + (TA)n Simple_repeat Simple_repeat 2 94 0 5 694 410 298 153 11 chr11 14395488 14395678 -107448178 + RLTR18B LTR ERVK 111 327 -185 5 694 317 24 24 0 chr11 14395690 14395732 -107448124 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 694 1597 213 133 134 chr11 14395847 14396568 -107447288 - RMER6D LTR ERVK 0 720 1 5 694 245 350 0 20 chr11 14396755 14396854 -107447002 + PB1D7 SINE Alu 23 119 -1 5 694 403 283 120 28 chr11 14397400 14397542 -107446314 - RLTR23 LTR ERV1 0 430 276 5 694 358 294 12 99 chr11 14397598 14397760 -107446096 - RLTR23 LTR ERV1 -275 155 8 5 694 592 356 55 26 chr11 14397852 14398198 -107445658 - Lx8 LINE L1 -157 7316 6961 5 694 1047 265 77 48 chr11 14398256 14398515 -107445341 + L1_Mur3 LINE L1 3616 3876 -2004 5 694 2710 203 40 38 chr11 14398515 14399119 -107444737 + RLTR1D LTR ERV1 1 605 0 5 694 1047 265 77 48 chr11 14399119 14399260 -107444596 + L1_Mur3 LINE L1 3877 4002 -1878 5 694 1347 95 11 0 chr11 14399260 14399449 -107444407 + B2_Mm1t SINE B2 1 191 -2 5 694 1047 265 77 48 chr11 14399449 14399474 -107444382 + L1_Mur3 LINE L1 4003 4036 -1844 5 694 201 74 0 0 chr11 14399474 14399501 -107444355 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 694 1047 265 77 48 chr11 14399501 14399683 -107444173 + L1_Mur3 LINE L1 4037 4243 -1637 5 694 9422 114 8 9 chr11 14400374 14401931 -107441925 - L1VL4 LINE L1 -1192 2367 812 5 694 618 39 0 0 chr11 14401931 14402008 -107441848 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 694 3872 197 11 11 chr11 14402008 14402619 -107441237 - L1VL4 LINE L1 -5491 811 202 5 694 340 314 49 8 chr11 14402808 14402930 -107440926 + B1F1 SINE Alu 22 148 -1 5 694 186 143 0 0 chr11 14402931 14402966 -107440890 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 5 694 25 65 0 0 chr11 14403027 14403073 -107440783 + AT_rich Low_complexity Low_complexity 1 46 0 5 694 24 0 0 0 chr11 14403732 14403756 -107440100 + AT_rich Low_complexity Low_complexity 1 24 0 5 694 565 371 58 18 chr11 14403833 14404231 -107439625 - Lx8 LINE L1 -4 7469 7056 5 694 4062 44 14 4 chr11 14404262 14404768 -107439088 + L1Md_F3 LINE L1 6074 6584 0 5 694 440 348 48 82 chr11 14404827 14405118 -107438738 - ORR1E LTR MaLR -16 343 63 5 694 4454 194 118 29 chr11 14406675 14408059 -107435797 + Lx6 LINE L1 2694 4200 -1680 5 694 745 260 190 125 chr11 14408060 14408491 -107435365 + MT2A LTR ERVL 1 459 -74 5 694 209 103 16 79 chr11 14408497 14408512 -107435344 + (TTATA)n Simple_repeat Simple_repeat 1 14 0 5 694 239 29 0 54 chr11 14408512 14408549 -107435307 + (CATAT)n Simple_repeat Simple_repeat 1 35 0 5 694 201 194 86 0 chr11 14408549 14408626 -107435230 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 694 6415 227 53 17 chr11 14408666 14410602 -107433254 + Lx6 LINE L1 4197 6208 -1252 5 694 729 23 0 0 chr11 14410602 14410689 -107433167 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 5 694 5753 279 45 31 chr11 14410689 14411635 -107432221 + Lx6 LINE L1 6209 7171 -289 5 694 2001 125 18 27 chr11 14411635 14411964 -107431892 - Lx2 LINE L1 -5 6992 6667 5 694 5753 279 45 31 chr11 14411964 14412212 -107431644 + Lx6 LINE L1 7172 7433 -27 5 694 222 80 19 39 chr11 14412364 14412416 -107431440 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 5 694 958 273 45 45 chr11 14412768 14413082 -107430774 + RMER5 LTR ERV1 151 464 -70 5 86 38238 41 1 1 chr11 14413725 14419644 -107424212 - L1Md_A LINE L1 -2 6583 563 5 695 609 107 0 0 chr11 14419637 14419721 -107424135 - L1Md_A LINE L1 -6282 337 254 5 695 891 269 38 125 chr11 14419906 14420275 -107423581 + MTE2a LTR MaLR 5 341 -38 5 695 276 250 15 188 chr11 14421092 14421161 -107422695 + MER31A LTR ERV1 11 75 -410 5 695 4172 27 2 0 chr11 14421161 14421642 -107422214 - LTRIS_Mm LTR ERV1 0 482 1 5 695 276 250 15 188 chr11 14421642 14421699 -107422157 + MER31A LTR ERV1 76 114 -371 5 695 1105 328 33 14 chr11 14421699 14422067 -107421789 + MTE2b LTR MaLR 1 375 -4 5 695 489 323 39 15 chr11 14422090 14422294 -107421562 - RMER5 LTR ERV1 -5 529 321 5 695 1205 350 95 27 chr11 14422572 14423119 -107420737 + MTE-int LTR MaLR 506 1089 -491 5 695 288 0 0 0 chr11 14424392 14424424 -107419432 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 695 2636 106 84 7 chr11 14424501 14424929 -107418927 + Lx3_Mus LINE L1 6541 7001 -8 5 695 560 279 83 48 chr11 14425449 14425784 -107418072 + Lx7 LINE L1 5518 5894 -1802 5 695 3299 35 5 2 chr11 14426011 14426406 -107417450 - MTA_Mm LTR MaLR 0 396 1 5 695 9121 167 98 7 chr11 14426446 14427607 -107416249 + L1_Mus3 LINE L1 3917 5240 -637 5 695 741 93 0 0 chr11 14427607 14427714 -107416142 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 695 9121 125 89 10 chr11 14427714 14429017 -107414839 + L1_Mus3 LINE L1 5241 6623 -15 5 695 7448 91 10 2 chr11 14429927 14431643 -107412213 - L1_Mus1 LINE L1 -1 6566 4840 5 695 855 29 0 0 chr11 14432216 14432318 -107411538 + (TC)n Simple_repeat Simple_repeat 2 103 0 5 695 226 308 99 0 chr11 14433205 14433296 -107410560 + MER34 LTR ERV1 372 471 -71 5 695 496 0 0 30 chr11 14433543 14433609 -107410247 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 695 1092 66 0 7 chr11 14433609 14433746 -107410110 - B1_Mm SINE Alu -10 137 2 5 695 209 235 20 0 chr11 14434101 14434152 -107409704 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 5 695 1123 50 43 0 chr11 14434325 14434465 -107409391 + B1_Mm SINE Alu 2 147 0 5 695 252 0 0 0 chr11 14434483 14434511 -107409345 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 695 436 331 102 40 chr11 14434610 14434884 -107408972 - B4A SINE B4 0 292 2 5 695 216 0 0 0 chr11 14435833 14435857 -107407999 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 695 871 284 0 5 chr11 14436478 14436690 -107407166 + B3 SINE B2 1 211 -5 5 695 1115 62 7 0 chr11 14436844 14436988 -107406868 - B1_Mm SINE Alu 0 147 3 5 695 26 0 0 0 chr11 14437591 14437617 -107406239 + AT_rich Low_complexity Low_complexity 1 26 0 5 695 1013 109 0 7 chr11 14437808 14437956 -107405900 + B1_Mus2 SINE Alu 1 147 0 5 695 2012 321 99 36 chr11 14439061 14440232 -107403624 - Lx8 LINE L1 -28 7445 6201 5 695 381 86 0 0 chr11 14440260 14440318 -107403538 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 695 4289 147 116 13 chr11 14440552 14440775 -107403081 - RMER17A2 LTR ERVK -1 905 676 5 695 621 0 0 0 chr11 14440775 14440844 -107403012 + (GA)n Simple_repeat Simple_repeat 1 69 0 5 695 4289 147 116 13 chr11 14440844 14441441 -107402415 - RMER17A2 LTR ERVK -231 675 3 5 695 285 292 25 0 chr11 14441448 14441568 -107402288 - Lx7 LINE L1 -1793 5903 5781 5 695 653 235 44 5 chr11 14441574 14441779 -107402077 + L1_Mur3 LINE L1 4420 4632 -1248 5 695 629 284 198 23 chr11 14441933 14442049 -107401807 + L1_Mur3 LINE L1 5122 5245 -635 5 695 201 74 0 0 chr11 14442049 14442076 -107401780 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 695 629 284 198 23 chr11 14442076 14442521 -107401335 + L1_Mur3 LINE L1 5246 5780 -100 5 695 200 31 62 0 chr11 14442523 14442555 -107401301 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 695 425 300 12 22 chr11 14443055 14443226 -107400630 + Lx9 LINE L1 6782 7048 -596 5 695 23 54 0 0 chr11 14443992 14444029 -107399827 + AT_rich Low_complexity Low_complexity 1 37 0 5 695 425 322 80 11 chr11 14444181 14444445 -107399411 + L1M5 LINE L1 3812 4093 -2053 5 695 1512 285 88 14 chr11 14444622 14445481 -107398375 + L1MC LINE L1 4109 5031 -1115 5 695 256 45 0 62 chr11 14446170 14446218 -107397638 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 695 313 336 9 27 chr11 14446219 14446329 -107397527 + MTD LTR MaLR 86 193 -226 5 695 238 332 61 10 chr11 14446331 14446529 -107397327 - L1M2 LINE L1 -769 5374 5167 5 695 2297 210 29 4 chr11 14446676 14447561 -107396295 + L1_Mur1 LINE L1 864 1763 -4114 5 695 1556 146 182 6 chr11 14447559 14447877 -107395979 + L1_Mur2 LINE L1 5497 5870 -7 5 695 1239 256 93 7 chr11 14447876 14448300 -107395556 + Lx2B LINE L1 6502 7055 -3 5 695 5487 57 0 13 chr11 14448519 14449229 -107394627 - L1Md_F2 LINE L1 0 6582 5882 5 695 459 0 0 0 chr11 14449432 14449483 -107394373 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 695 200 196 33 67 chr11 14450081 14450141 -107393715 + A-rich Low_complexity Low_complexity 3 60 0 5 695 431 211 22 0 chr11 14450571 14450661 -107393195 - RLTR25A LTR ERVK 0 1103 1012 5 695 2145 70 11 0 chr11 14450663 14450947 -107392909 + L1_Mus1 LINE L1 6281 6567 0 5 695 21 36 0 0 chr11 14451245 14451273 -107392583 + AT_rich Low_complexity Low_complexity 1 28 0 5 695 216 0 0 0 chr11 14451286 14451310 -107392546 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 695 396 268 130 87 chr11 14451341 14451525 -107392331 - RLTR25A LTR ERVK -80 948 757 5 695 243 0 0 0 chr11 14451625 14451652 -107392204 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 695 3069 173 165 31 chr11 14451913 14452477 -107391379 - RLTR25B LTR ERVK -174 854 190 5 695 2223 122 27 3 chr11 14452477 14452813 -107391043 - ORR1A1 LTR MaLR -2 344 1 5 695 3069 173 165 31 chr11 14452813 14452999 -107390857 - RLTR25B LTR ERVK -839 189 3 5 695 24 32 0 0 chr11 14453750 14453781 -107390075 + AT_rich Low_complexity Low_complexity 1 31 0 5 695 556 38 12 12 chr11 14454494 14454574 -107389282 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 695 440 100 12 0 chr11 14455732 14455812 -107388044 + (TC)n Simple_repeat Simple_repeat 2 82 0 5 695 483 18 0 0 chr11 14455812 14455868 -107387988 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 695 239 320 58 10 chr11 14457449 14457553 -107386303 - PB1D10 SINE Alu -6 111 3 5 695 359 302 10 0 chr11 14457906 14458002 -107385854 - RSINE1 SINE B4 -67 98 2 5 695 800 282 97 26 chr11 14458155 14458497 -107385359 + ORR1D2 LTR MaLR 1 366 -4 5 695 1231 346 112 23 chr11 14458513 14459288 -107384568 + Lx8 LINE L1 6434 7277 -196 5 695 3037 217 114 38 chr11 14459422 14460262 -107383594 + RMER13B LTR ERVK 1 904 -4 5 695 1642 299 30 14 chr11 14461070 14461569 -107382287 - Lx6 LINE L1 -8 7452 6946 5 695 331 327 88 41 chr11 14464677 14465151 -107378705 + L1MCb LINE L1 816 1391 -5360 5 695 471 35 0 0 chr11 14465163 14465220 -107378636 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 5 695 30 45 0 0 chr11 14465313 14465357 -107378499 + AT_rich Low_complexity Low_complexity 1 44 0 5 695 11211 166 149 24 chr11 14465529 14466587 -107377269 + L1_Mur1 LINE L1 6 1614 -4272 6 695 2936 86 5 2 chr11 14466587 14466982 -107376874 - MTA_Mm LTR MaLR 0 396 1 6 695 11211 109 3 4 chr11 14466982 14468281 -107375575 + L1_Mur1 LINE L1 1615 2911 -2975 6 695 337 349 52 32 chr11 14468394 14468548 -107375308 + RSINE1 SINE B4 3 159 -6 6 695 317 338 65 30 chr11 14468710 14468942 -107374914 + L1MC LINE L1 5353 5592 -2193 6 695 485 68 14 0 chr11 14468955 14469029 -107374827 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 695 2900 47 7 81 chr11 14469057 14469476 -107374380 + RLTR10 LTR ERVK 1 388 -2 6 695 12656 40 49 35 chr11 14469487 14471191 -107372665 + RLTR10-int LTR ERVK 39 1718 -269 6 695 2179 91 165 3 chr11 14471193 14471545 -107372311 + RLTR10 LTR ERVK 1 409 -2 6 695 807 66 0 0 chr11 14471558 14471664 -107372192 + (TTCC)n Simple_repeat Simple_repeat 4 109 0 6 695 25021 153 33 8 chr11 14471675 14477730 -107366126 - L1_Mus3 LINE L1 -19 6619 394 6 695 24 67 0 0 chr11 14477830 14477875 -107365981 + AT_rich Low_complexity Low_complexity 1 45 0 6 695 831 279 35 25 chr11 14477875 14478077 -107365779 - B3 SINE B2 -8 208 5 6 695 238 252 88 26 chr11 14478309 14478423 -107365433 + L1MC LINE L1 5713 5833 -511 6 695 1729 222 16 3 chr11 14478603 14478987 -107364869 - Lx2B LINE L1 0 7000 6612 6 695 21 0 0 0 chr11 14479779 14479800 -107364056 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 459 53 0 0 chr11 14479951 14480008 -107363848 - L1_Mus1 LINE L1 -188 6379 6323 6 695 824 327 21 4 chr11 14480142 14480421 -107363435 - Lx8 LINE L1 -987 6486 6203 6 695 481 333 7 28 chr11 14480983 14481128 -107362728 + B1F SINE Alu 1 142 -7 6 695 24 0 0 0 chr11 14481538 14481562 -107362294 + AT_rich Low_complexity Low_complexity 1 24 0 6 695 3334 218 11 42 chr11 14483554 14484340 -107359516 + Lx2B LINE L1 6226 6987 -13 6 695 307 342 27 9 chr11 14484755 14484867 -107358989 - B1F SINE Alu -12 137 24 6 695 1399 295 28 32 chr11 14485314 14485749 -107358107 - Lx6 LINE L1 -4 7456 7024 6 695 22 35 0 0 chr11 14485768 14485797 -107358059 + AT_rich Low_complexity Low_complexity 1 29 0 6 695 401 105 18 0 chr11 14485914 14485971 -107357885 - Lx3C LINE L1 -604 6372 6315 6 695 632 214 6 13 chr11 14485968 14486124 -107357732 - Lx3B LINE L1 -795 6178 6024 6 695 4272 134 5 5 chr11 14486106 14486778 -107357078 - Lx3B LINE L1 -652 6321 5650 6 695 393 278 5 21 chr11 14486777 14486941 -107356915 + Lx3A LINE L1 5953 6118 -855 6 695 333 0 0 0 chr11 14486941 14486978 -107356878 + (GGGGA)n Simple_repeat Simple_repeat 2 38 0 6 695 337 226 47 23 chr11 14486979 14487065 -107356791 + polypurine Low_complexity Low_complexity 3 90 0 6 695 2691 179 32 21 chr11 14487066 14487595 -107356261 + Lx3A LINE L1 6390 6924 -57 6 695 1832 134 115 17 chr11 14488284 14488633 -107355223 + RLTR9A2 LTR ERVK 1 383 0 6 695 197 222 111 0 chr11 14488987 14489050 -107354806 + L3 LINE CR1 739 808 -3681 6 695 240 290 78 29 chr11 14489882 14489985 -107353871 + PB1D9 SINE Alu 5 112 -8 6 695 281 250 17 0 chr11 14490309 14490369 -107353487 - RSINE1 SINE B4 -85 80 20 6 695 297 185 0 0 chr11 14490753 14490818 -107353038 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 695 3772 128 6 1 chr11 14491347 14492109 -107351747 - Lx LINE L1 -513 6141 5372 6 695 8114 181 19 6 chr11 14492101 14492684 -107351172 + L1_Mur2 LINE L1 3775 4363 -1514 6 695 450 0 0 0 chr11 14492684 14492734 -107351122 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 695 8114 181 19 6 chr11 14492734 14493710 -107350146 + L1_Mur2 LINE L1 4364 5353 -524 6 695 422 296 69 14 chr11 14493720 14493864 -107349992 - MT2A LTR ERVL -360 173 22 6 695 256 390 101 0 chr11 14493864 14493879 -107349977 - MTE2a LTR MaLR -188 126 6 6 695 396 111 0 0 chr11 14493955 14494027 -107349829 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 695 361 253 25 18 chr11 14494033 14494173 -107349683 + L1M2 LINE L1 5633 5774 -390 6 695 405 70 0 0 chr11 14494541 14494598 -107349258 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 695 555 16 0 0 chr11 14494606 14494670 -107349186 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 695 325 268 78 64 chr11 14494810 14495101 -107348755 + L1MB8 LINE L1 5467 5769 -415 6 695 420 107 26 26 chr11 14495114 14495229 -107348627 + (TA)n Simple_repeat Simple_repeat 2 116 0 6 695 207 235 0 0 chr11 14495255 14495306 -107348550 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 695 350 353 36 25 chr11 14495393 14495672 -107348184 + L1MB8 LINE L1 5876 6157 -21 6 695 22 0 0 0 chr11 14495981 14496003 -107347853 + AT_rich Low_complexity Low_complexity 1 22 0 6 695 485 348 82 17 chr11 14496090 14496321 -107347535 - Lx8 LINE L1 -121 7352 7107 6 695 318 287 62 68 chr11 14496373 14496519 -107347337 - MTD LTR MaLR 0 419 275 6 695 256 30 0 0 chr11 14496875 14496908 -107346948 + U5 snRNA snRNA 9 41 -75 6 695 354 375 21 0 chr11 14496905 14497049 -107346807 - MTD LTR MaLR -208 211 65 6 695 240 332 124 76 chr11 14500764 14501119 -107342737 - L2 LINE L2 -896 2523 2152 1 695 801 256 106 14 chr11 14501439 14501862 -107341994 + L1MA8 LINE L1 5469 5940 -249 2 695 240 172 156 0 chr11 14502042 14502106 -107341750 + L1MA8 LINE L1 6165 6238 -53 2 695 243 0 0 0 chr11 14502641 14502668 -107341188 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 695 822 308 164 6 chr11 14502982 14503305 -107340551 + MTE2b LTR MaLR 1 374 -5 4 695 27 73 0 0 chr11 14503593 14503648 -107340208 + AT_rich Low_complexity Low_complexity 1 55 0 5 695 1536 101 42 0 chr11 14504989 14505022 -107338834 + L1Md_F2 LINE L1 5361 5402 -481 6 695 396 0 0 0 chr11 14505022 14505066 -107338790 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 695 1536 101 42 0 chr11 14505066 14505249 -107338607 + L1Md_F2 LINE L1 5403 5585 -298 6 695 6514 92 0 81 chr11 14505249 14505643 -107338213 + L1Md_F2 LINE L1 5627 6017 -565 6 695 1158 75 0 0 chr11 14505643 14505789 -107338067 + B1_Mm SINE Alu 1 146 -1 8 695 6514 92 0 81 chr11 14505789 14506418 -107337438 + L1Md_F2 LINE L1 6018 6567 -15 6 695 238 211 0 0 chr11 14506428 14506480 -107337376 + A-rich Low_complexity Low_complexity 1 52 0 9 695 788 356 32 18 chr11 14507288 14507571 -107336285 + B4A SINE B4 6 292 0 1 695 32 26 0 0 chr11 14507859 14507898 -107335958 + AT_rich Low_complexity Low_complexity 1 39 0 1 695 1129 340 79 79 chr11 14507929 14508323 -107335533 - MTE-int LTR MaLR -141 1439 1023 1 695 1101 95 0 0 chr11 14508323 14508471 -107335385 - B1_Mus1 SINE Alu 0 148 1 1 695 1129 340 79 79 chr11 14508471 14508770 -107335086 - MTE-int LTR MaLR -558 1022 746 1 695 445 376 50 5 chr11 14508860 14509079 -107334777 - MTE-int LTR MaLR -1134 446 218 1 695 397 333 23 45 chr11 14509107 14509283 -107334573 - MTE-int LTR MaLR -1408 172 1 1 695 241 254 14 0 chr11 14510522 14510603 -107333253 + L1M5 LINE L1 5385 5466 -978 1 695 431 356 34 0 chr11 14510613 14510762 -107333094 + RSINE1 SINE B4 12 165 0 1 695 311 135 21 43 chr11 14510762 14510855 -107333001 + (CA)n Simple_repeat Simple_repeat 1 91 0 1 695 25 51 0 0 chr11 14510862 14510901 -107332955 + AT_rich Low_complexity Low_complexity 1 39 0 1 695 272 313 0 0 chr11 14510909 14510976 -107332880 + B3 SINE B2 1 67 -149 1 695 416 323 25 13 chr11 14510980 14511137 -107332719 - Lx8 LINE L1 -1028 6445 6287 1 695 607 344 23 18 chr11 14511267 14511780 -107332076 + L1_Mur3 LINE L1 4940 5489 -685 2 695 5122 7 0 0 chr11 14512162 14512732 -107331124 + L1Md_T LINE L1 6013 6582 0 2 695 238 98 39 0 chr11 14513417 14513468 -107330388 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 695 487 320 94 50 chr11 14513768 14514067 -107329789 - MTEa LTR MaLR -67 312 1 2 695 1081 232 9 21 chr11 14514274 14514507 -107329349 + Lx4B LINE L1 6815 7044 -14 2 695 470 287 25 13 chr11 14514524 14514683 -107329173 + RMER5 LTR ERV1 358 518 -16 2 695 333 0 0 0 chr11 14514901 14514938 -107328918 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 695 463 118 24 0 chr11 14516239 14516324 -107327532 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 695 248 316 25 0 chr11 14516791 14516870 -107326986 + MLT1A LTR MaLR 276 356 -18 2 695 225 0 0 0 chr11 14517630 14517655 -107326201 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 695 923 0 9 0 chr11 14517655 14517761 -107326095 + (GA)n Simple_repeat Simple_repeat 2 109 0 3 695 1124 294 55 47 chr11 14518242 14518713 -107325143 - RLTR20B3 LTR ERVK -56 521 47 3 695 365 317 69 21 chr11 14518782 14518927 -107324929 - ORR1E LTR MaLR -207 152 1 3 695 1045 276 64 36 chr11 14519226 14519692 -107324164 + Lx9 LINE L1 7166 7644 0 3 695 301 326 0 11 chr11 14519753 14519846 -107324010 - Lx8 LINE L1 -138 7335 7244 3 695 1367 231 98 88 chr11 14519862 14520662 -107323194 - L1_Mur3 LINE L1 -2144 3736 3012 3 695 23 33 0 0 chr11 14520663 14520693 -107323163 + AT_rich Low_complexity Low_complexity 1 30 0 3 695 2697 148 0 5 chr11 14520702 14521150 -107322706 - Lx3A LINE L1 -10 6971 6526 3 695 4027 184 40 86 chr11 14521150 14522095 -107321761 - RLTR13D6 LTR ERVK 0 902 1 3 695 5464 122 87 9 chr11 14522096 14522248 -107321608 - Lx3_Mus LINE L1 -460 6549 6388 3 695 5774 139 39 19 chr11 14522248 14523251 -107320605 - RLTR13D5 LTR ERVK 0 1023 1 4 695 5464 119 37 5 chr11 14523251 14524322 -107319534 - Lx3_Mus LINE L1 -622 6387 5260 3 695 2266 212 49 36 chr11 14524323 14524876 -107318980 + RLTR31_Mm LTR ERVK 2 561 0 4 695 7094 106 3 0 chr11 14524876 14525910 -107317946 - Lx3_Mus LINE L1 -621 5265 4229 3 695 1140 84 0 0 chr11 14525903 14526058 -107317798 - L1_Mus4 LINE L1 -765 5871 5717 4 695 1467 153 4 8 chr11 14526049 14526287 -107317569 + L1_Mus4 LINE L1 5471 5707 -176 4 695 378 0 0 0 chr11 14527516 14527558 -107316298 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 695 268 317 111 35 chr11 14528112 14528256 -107315600 - MER76 LTR ERVL -226 465 311 4 695 24 53 0 0 chr11 14528860 14528898 -107314958 + AT_rich Low_complexity Low_complexity 1 38 0 4 695 303 93 0 0 chr11 14531589 14531632 -107312224 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 695 546 16 0 0 chr11 14531632 14531694 -107312162 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 695 2984 57 18 3 chr11 14532380 14532770 -107311086 - MTA_Mm LTR MaLR 0 396 1 4 695 270 94 15 30 chr11 14532944 14532977 -107310879 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 695 357 24 0 0 chr11 14532977 14533019 -107310837 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 695 270 94 15 30 chr11 14533019 14533044 -107310812 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 695 507 60 0 0 chr11 14533044 14533111 -107310745 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 695 270 94 15 30 chr11 14533111 14533117 -107310739 + (TA)n Simple_repeat Simple_repeat 2 7 0 5 695 194 136 23 0 chr11 14534189 14534233 -107309623 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 5 695 306 0 0 0 chr11 14534282 14534316 -107309540 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 5 695 539 242 16 8 chr11 14534522 14534647 -107309209 - RMER19C LTR ERVK 0 611 486 5 695 1919 70 0 0 chr11 14534900 14535142 -107308714 + L1_Mus1 LINE L1 6325 6566 -1 5 695 1024 344 6 48 chr11 14535572 14535929 -107307927 + MTE2b LTR MaLR 1 342 -37 5 695 590 235 251 6 chr11 14536002 14536173 -107307683 - B3 SINE B2 -2 214 2 5 695 595 323 49 19 chr11 14536193 14536398 -107307458 - B3 SINE B2 -2 214 4 6 695 25 31 0 0 chr11 14536400 14536432 -107307424 + AT_rich Low_complexity Low_complexity 1 32 0 6 695 23 54 0 0 chr11 14536468 14536505 -107307351 + AT_rich Low_complexity Low_complexity 1 37 0 6 695 530 285 11 16 chr11 14536693 14536882 -107306974 - Lx9 LINE L1 -285 7359 7172 6 695 485 16 16 0 chr11 14536919 14536981 -107306875 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 695 189 74 0 0 chr11 14536982 14537009 -107306847 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 695 21 36 0 0 chr11 14537572 14537600 -107306256 + AT_rich Low_complexity Low_complexity 1 28 0 6 695 26 64 0 0 chr11 14537658 14537705 -107306151 + AT_rich Low_complexity Low_complexity 1 47 0 6 695 12801 158 18 19 chr11 14538574 14541712 -107302144 + L1Md_F LINE L1 224 3364 -2519 6 695 31989 85 2 5 chr11 14541718 14546912 -107296944 + L1Md_F2 LINE L1 414 5586 -297 6 695 7837 49 7 7 chr11 14546912 14547906 -107295950 + L1Md_F2 LINE L1 5589 6582 0 6 695 183 80 0 0 chr11 14547919 14547944 -107295912 + (A)n Simple_repeat Simple_repeat 1 25 0 7 695 2986 160 189 0 chr11 14547944 14548606 -107295250 + L1Md_F LINE L1 3350 4136 -1747 6 86 5091 117 25 0 chr11 14548606 14549370 -107294486 + L1_Mus2 LINE L1 5783 6565 -1 7 696 537 55 0 0 chr11 14549626 14549699 -107294157 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 696 216 337 0 0 chr11 14550200 14550295 -107293561 + (CATA)n Simple_repeat Simple_repeat 1 95 0 7 696 1118 167 0 0 chr11 14550337 14550535 -107293321 + Lx2 LINE L1 6799 6996 -1 7 696 263 197 0 0 chr11 14550605 14550676 -107293180 - L1M2 LINE L1 -477 5823 5700 7 696 477 286 48 66 chr11 14550738 14550966 -107292890 + MTD LTR MaLR 182 405 -14 7 696 1562 315 95 21 chr11 14550997 14552670 -107291186 - L1M2 LINE L1 -725 5572 3715 7 696 1014 121 0 0 chr11 14552680 14552837 -107291019 + (TTCC)n Simple_repeat Simple_repeat 3 159 0 7 696 9354 122 10 12 chr11 14552844 14554536 -107289320 - Lx3A LINE L1 -19 6962 5274 7 696 234 0 0 0 chr11 14554536 14554562 -107289294 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 696 9354 121 3 12 chr11 14554562 14555393 -107288463 - Lx3A LINE L1 -613 5273 4451 7 696 9767 178 22 10 chr11 14555821 14558538 -107285318 + Lx LINE L1 3905 6652 -2 8 696 509 302 53 10 chr11 14558668 14558875 -107284981 + B3 SINE B2 1 216 0 8 696 602 128 0 0 chr11 14559954 14560048 -107283808 + L1_Mur2 LINE L1 4355 4448 -1429 8 696 234 258 0 51 chr11 14561493 14561591 -107282265 + CT-rich Low_complexity Low_complexity 2 94 0 8 696 1540 206 67 34 chr11 14561681 14562008 -107281848 - MTC LTR MaLR -6 415 78 8 696 1735 212 25 34 chr11 14562176 14562194 -107281662 - ORR1B1 LTR MaLR 0 394 377 8 696 2187 163 76 111 chr11 14562194 14562746 -107281110 - RMER16 LTR ERVK 0 533 1 8 696 1735 212 25 34 chr11 14562746 14563084 -107280772 - ORR1B1 LTR MaLR -18 376 41 8 696 302 292 127 24 chr11 14563090 14563255 -107280601 - RMER15 LTR ERVL -63 512 331 8 696 731 258 118 38 chr11 14563291 14563605 -107280251 - RLTR15 LTR ERVK -18 341 3 8 696 288 0 0 0 chr11 14564023 14564055 -107279801 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 8 696 498 46 0 0 chr11 14566520 14566585 -107277271 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 696 676 76 0 32 chr11 14566586 14566709 -107277147 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 9 696 22 56 0 0 chr11 14568156 14568192 -107275664 + AT_rich Low_complexity Low_complexity 1 36 0 9 696 27 49 0 0 chr11 14568231 14568272 -107275584 + AT_rich Low_complexity Low_complexity 1 41 0 9 696 235 256 0 32 chr11 14568647 14568740 -107275116 - Lx4B LINE L1 0 7058 6969 9 696 1216 176 41 29 chr11 14568751 14568996 -107274860 - Lx4B LINE L1 -153 6905 6658 9 696 641 260 16 0 chr11 14568998 14569125 -107274731 + ETnERV2-int LTR ERVK 7074 7202 -204 9 696 1723 160 49 32 chr11 14569503 14569851 -107274005 - Lx4B LINE L1 -392 6666 6313 9 696 1124 273 19 53 chr11 14570938 14571317 -107272539 - Lx6 LINE L1 -1007 6453 6088 9 696 2309 242 32 2 chr11 14571487 14571955 -107271901 + Lx6 LINE L1 6891 7372 -88 9 696 24 0 0 0 chr11 14572037 14572061 -107271795 + AT_rich Low_complexity Low_complexity 1 24 0 9 696 1543 202 17 17 chr11 14572978 14573265 -107270591 - MTC LTR MaLR -69 352 66 9 696 1655 303 27 19 chr11 14573270 14573904 -107269952 - Lx6 LINE L1 -26 7434 6450 1 696 290 237 42 21 chr11 14574241 14574336 -107269520 - MTEb LTR MaLR 0 379 283 1 696 382 328 25 0 chr11 14574359 14574478 -107269378 - MTEb LTR MaLR -150 229 108 1 696 1181 193 168 33 chr11 14574598 14574931 -107268925 + ORR1C1 LTR MaLR 1 378 0 1 696 489 191 0 0 chr11 14574935 14575040 -107268816 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 696 473 228 51 14 chr11 14575040 14575178 -107268678 + (TATATG)n Simple_repeat Simple_repeat 1 143 0 1 696 420 289 19 0 chr11 14575178 14575282 -107268574 - B1_Mur1 SINE Alu -3 146 41 1 696 193 70 0 65 chr11 14575287 14575333 -107268523 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1 696 1096 95 0 0 chr11 14575489 14575636 -107268220 + B1_Mm SINE Alu 1 147 0 1 696 543 132 0 0 chr11 14575744 14575835 -107268021 + (CA)n Simple_repeat Simple_repeat 1 91 0 1 696 209 33 33 0 chr11 14576806 14576836 -107267020 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1 696 26 0 0 0 chr11 14576859 14576885 -107266971 + AT_rich Low_complexity Low_complexity 1 26 0 1 696 244 123 54 14 chr11 14577844 14577918 -107265938 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 696 309 310 58 39 chr11 14578194 14578298 -107265558 + PB1D10 SINE Alu 12 117 0 1 696 1476 99 0 5 chr11 14578531 14578753 -107265103 - L1_Mus4 LINE L1 -6 6630 6410 1 696 297 0 0 0 chr11 14578894 14578927 -107264929 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 696 1131 51 0 0 chr11 14579022 14579159 -107264697 + B1_Mus1 SINE Alu 1 137 -11 1 696 567 0 0 0 chr11 14579159 14579222 -107264634 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 1 696 423 106 0 0 chr11 14579396 14579462 -107264394 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 696 8716 72 4 4 chr11 14580262 14582108 -107261748 - L1Md_F2 LINE L1 0 6582 4737 1 696 255 336 0 32 chr11 14582411 14582609 -107261247 + (TATATG)n Simple_repeat Simple_repeat 1 191 0 1 696 343 312 56 12 chr11 14582938 14583100 -107260756 - L1M2 LINE L1 -1660 4483 4315 1 696 292 267 0 0 chr11 14583100 14583160 -107260696 - PB1D7 SINE Alu -55 65 6 1 696 3148 144 47 21 chr11 14583843 14584374 -107259482 + Lx LINE L1 6110 6654 0 1 696 27 0 0 0 chr11 14584597 14584624 -107259232 + AT_rich Low_complexity Low_complexity 1 27 0 1 696 1565 302 72 20 chr11 14584634 14585174 -107258682 - Lx6 LINE L1 -24 7436 6869 1 696 1583 264 37 33 chr11 14585165 14585710 -107258146 - Lx7 LINE L1 -1382 6314 5768 1 696 460 317 97 68 chr11 14585720 14585998 -107257858 - Lx9 LINE L1 -496 7148 6863 1 696 385 279 33 30 chr11 14585998 14586220 -107257636 + RLTR40 LTR ERVK 487 812 -5 1 696 244 208 75 0 chr11 14587172 14587225 -107256631 - B3 SINE B2 -155 61 5 1 696 335 306 90 28 chr11 14587254 14587432 -107256424 + MLT1D LTR MaLR 307 495 -10 1 696 28 0 0 0 chr11 14587726 14587754 -107256102 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 1178 68 0 7 chr11 14587810 14587959 -107255897 + B1_Mus1 SINE Alu 1 148 0 1 696 268 77 0 37 chr11 14587959 14588013 -107255843 + (CAAAAA)n Simple_repeat Simple_repeat 6 57 0 1 696 370 290 132 37 chr11 14589160 14589187 -107254669 - B3 SINE B2 -8 208 183 1 696 441 81 0 0 chr11 14589187 14589249 -107254607 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 696 370 290 132 37 chr11 14589249 14589411 -107254445 - B3 SINE B2 -34 182 1 1 696 28 29 0 0 chr11 14591097 14591132 -107252724 + AT_rich Low_complexity Low_complexity 1 35 0 1 696 300 371 8 25 chr11 14591195 14591314 -107252542 - PB1D10 SINE Alu 0 117 1 1 696 270 56 0 0 chr11 14591756 14591792 -107252064 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 696 526 299 58 31 chr11 14591792 14592085 -107251771 + Lx7 LINE L1 4290 4590 -1290 1 696 446 364 14 23 chr11 14592117 14592463 -107251393 + Lx7 LINE L1 4695 5037 -843 1 696 1850 209 52 114 chr11 14592479 14592997 -107250859 + RMER19C LTR ERVK 1 486 -125 1 696 234 0 0 0 chr11 14593184 14593210 -107250646 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 696 22 0 0 0 chr11 14593304 14593326 -107250530 + AT_rich Low_complexity Low_complexity 1 22 0 1 696 296 296 175 28 chr11 14594258 14594582 -107249274 + MER57D LTR ERV1 24 408 -3 1 696 816 335 95 42 chr11 14594853 14594927 -107248929 + Lx7 LINE L1 6100 6172 -1301 1 696 237 33 0 0 chr11 14594927 14594957 -107248899 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 696 961 341 103 37 chr11 14594957 14595983 -107247873 + Lx7 LINE L1 6173 7306 -167 1 696 651 108 0 0 chr11 14596647 14596758 -107247098 + (CA)n Simple_repeat Simple_repeat 2 112 0 1 696 423 0 0 0 chr11 14596963 14597010 -107246846 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 696 390 21 0 0 chr11 14597851 14597898 -107245958 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 696 408 82 0 0 chr11 14597893 14597954 -107245902 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 696 355 310 0 94 chr11 14598011 14598139 -107245717 - B3A SINE B2 -75 123 8 1 696 524 323 32 5 chr11 14599420 14599641 -107244215 - RLTR4_MM-int LTR ERV1 -3866 3735 3509 1 696 263 355 64 20 chr11 14599649 14599899 -107243957 - RLTR4_MM-int LTR ERV1 -4297 3304 3044 1 696 484 310 67 30 chr11 14600273 14600542 -107243314 - MuRRS4-int LTR ERV1 -3626 1437 1159 1 696 7022 86 23 10 chr11 14601777 14603208 -107240648 - L1_Mus2 LINE L1 -7 6559 5113 1 696 701 276 93 67 chr11 14603967 14604396 -107239460 - RMER2 LTR ERV1 -27 540 1 1 696 1753 276 24 31 chr11 14604429 14605008 -107238848 + RMER15 LTR ERVL 1 575 0 1 696 1321 115 5 0 chr11 14605077 14605268 -107238588 - L1_Mus3 LINE L1 -261 6377 6186 1 696 1588 102 12 4 chr11 14605268 14605513 -107238343 + L1_Mus3 LINE L1 6389 6635 -3 1 696 467 302 139 31 chr11 14605586 14606311 -107237545 + L1MC2 LINE L1 5164 5961 -383 1 696 400 318 77 51 chr11 14606987 14607143 -107236713 + B3A SINE B2 4 163 -30 1 696 285 51 0 0 chr11 14607143 14607182 -107236674 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 696 25 0 0 0 chr11 14607200 14607225 -107236631 + AT_rich Low_complexity Low_complexity 1 25 0 1 696 230 271 17 0 chr11 14607642 14607701 -107236155 + B1F SINE Alu 90 149 0 1 696 401 272 86 23 chr11 14608013 14608141 -107235715 + MTE-int LTR MaLR 722 857 -723 1 696 966 191 364 0 chr11 14608143 14608426 -107235430 - ORR1B1 LTR MaLR -8 386 1 1 696 1100 352 42 21 chr11 14608461 14608893 -107234963 + MTE-int LTR MaLR 924 1364 -216 1 696 4460 242 65 38 chr11 14608927 14610196 -107233660 - ORR1D1-int LTR MaLR -52 1318 34 1 696 2321 75 75 0 chr11 14610196 14610518 -107233338 - ORR1A1 LTR MaLR 0 346 1 1 696 1602 281 72 60 chr11 14610518 14610551 -107233305 - ORR1D1-int LTR MaLR -1476 33 1 1 696 1181 286 78 12 chr11 14610556 14610902 -107232954 - ORR1D1 LTR MaLR -5 369 1 1 696 21 0 0 0 chr11 14612038 14612059 -107231797 + AT_rich Low_complexity Low_complexity 1 21 0 1 696 262 380 0 0 chr11 14612231 14612310 -107231546 + ID4 SINE ID 5 83 0 1 696 261 0 0 0 chr11 14612488 14612517 -107231339 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 696 21 71 0 0 chr11 14612641 14612683 -107231173 + AT_rich Low_complexity Low_complexity 1 42 0 1 696 1179 276 41 22 chr11 14612865 14613184 -107230672 - MTD LTR MaLR -94 325 1 1 696 21 36 0 0 chr11 14613529 14613557 -107230299 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 376 313 15 51 chr11 14613640 14613862 -107229994 + L1_Mus1 LINE L1 5108 5321 -825 1 696 411 128 51 0 chr11 14613862 14613940 -107229916 + L1Md_A LINE L1 6489 6570 -12 1 696 376 313 15 51 chr11 14613940 14613990 -107229866 + L1_Mus1 LINE L1 5322 5370 -776 1 696 471 35 0 0 chr11 14614010 14614067 -107229789 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 696 2521 239 41 27 chr11 14614199 14614783 -107229073 - Lx5 LINE L1 -7 7043 6452 1 696 349 324 36 0 chr11 14614928 14615039 -107228817 - B1F2 SINE Alu -21 128 14 1 696 255 59 0 0 chr11 14615140 14615174 -107228682 - Lx3C LINE L1 -1160 5816 5783 1 696 958 101 58 0 chr11 14615183 14615322 -107228534 - B1_Mus1 SINE Alu 0 148 2 1 696 1605 120 4 0 chr11 14615350 14615583 -107228273 - L1_Mus1 LINE L1 -1 6566 6333 1 696 650 234 32 37 chr11 14615589 14615634 -107228222 + L1_Mus1 LINE L1 5595 5639 -534 1 696 2295 64 132 11 chr11 14615634 14615982 -107227874 + RLTR10 LTR ERVK 1 390 0 1 696 5576 78 4 9 chr11 14615982 14616705 -107227151 + L1_Mus1 LINE L1 5611 6330 -237 1 696 1332 280 57 8 chr11 14616729 14617096 -107226760 - ORR1B1 LTR MaLR -9 385 1 1 696 791 116 33 0 chr11 14617647 14617768 -107226088 + B1_Mus2 SINE Alu 13 137 -10 1 696 261 0 0 0 chr11 14617768 14617797 -107226059 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 696 1180 75 0 0 chr11 14617970 14618116 -107225740 + B1_Mm SINE Alu 2 147 0 1 696 527 305 17 22 chr11 14618616 14618794 -107225062 - B3A SINE B2 -18 180 4 1 696 347 107 0 0 chr11 14618886 14618942 -107224914 + Lx3A LINE L1 6921 6976 -5 1 696 27 62 0 0 chr11 14618974 14619022 -107224834 + AT_rich Low_complexity Low_complexity 1 48 0 1 696 31 44 0 0 chr11 14619210 14619255 -107224601 + AT_rich Low_complexity Low_complexity 1 45 0 1 696 458 291 104 57 chr11 14620199 14620638 -107223218 - L1M4 LINE L1 -719 5455 4987 1 696 417 292 102 29 chr11 14620674 14620988 -107222868 - L1MD LINE L1 -1778 4368 4032 1 696 3077 44 8 0 chr11 14621111 14621494 -107222362 - L1Md_F2 LINE L1 -3 6579 6194 1 696 1886 189 34 12 chr11 14621570 14622115 -107221741 - Lx4B LINE L1 -4 7054 6398 1 696 270 259 113 73 chr11 14622470 14622620 -107221236 - B2_Mm2 SINE B2 -1 194 39 1 696 4455 78 3 37 chr11 14623672 14624321 -107219535 + L1_Mus2 LINE L1 5940 6566 0 1 696 322 246 15 0 chr11 14624336 14624401 -107219455 - B3 SINE B2 -150 66 1 1 696 192 143 0 0 chr11 14624431 14624473 -107219383 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 1 696 468 0 0 0 chr11 14624945 14624997 -107218859 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 696 685 341 48 28 chr11 14625305 14625808 -107218048 + ERVL-int LTR ERVL 253 851 -4910 1 696 958 93 50 0 chr11 14625819 14625958 -107217898 - B1_Mus2 SINE Alu 0 147 2 1 696 922 284 153 68 chr11 14626152 14626518 -107217338 + Lx3C LINE L1 6607 7003 -5 1 696 720 372 3 3 chr11 14626793 14627145 -107216711 + ERVL-int LTR ERVL 1274 1670 -4087 1 696 537 291 114 0 chr11 14627149 14627324 -107216532 + MTD LTR MaLR 3 197 -222 1 696 474 340 18 5 chr11 14627525 14627744 -107216112 + ERVL-int LTR ERVL 2305 2526 -3235 1 696 256 269 0 0 chr11 14627781 14627833 -107216023 + B1F SINE Alu 66 117 -32 2 696 958 153 52 10 chr11 14627874 14628066 -107215790 - L1_Mus4 LINE L1 -7 6629 6430 2 696 273 319 50 114 chr11 14628066 14628109 -107215747 + ERVL-int LTR ERVL 2466 2505 -3252 1 696 3863 151 80 8 chr11 14628109 14628864 -107214992 + RMER17D2 LTR ERVK 1 809 0 2 696 273 319 50 114 chr11 14628864 14628921 -107214935 + ERVL-int LTR ERVL 2506 2537 -3220 1 696 820 78 0 0 chr11 14628921 14629036 -107214820 - L1_Mus1 LINE L1 0 6567 6453 2 696 273 319 50 114 chr11 14629036 14629312 -107214544 + ERVL-int LTR ERVL 2538 2819 -2938 1 696 1290 40 0 0 chr11 14629313 14629465 -107214391 + L1Md_F2 LINE L1 5434 5585 -298 2 696 7455 72 10 2 chr11 14629466 14630442 -107213414 + L1Md_F2 LINE L1 5587 6570 -12 2 696 660 328 119 54 chr11 14630587 14631084 -107212772 - MT2A LTR ERVL -2 531 3 2 696 1077 241 42 62 chr11 14631094 14631528 -107212328 - MERVL_2A-int LTR ERVL -16 5745 5321 2 696 370 346 45 89 chr11 14631559 14631851 -107212005 - MT2A LTR ERVL -154 379 101 2 696 2612 181 53 0 chr11 14632061 14632591 -107211265 - L1_Mur2 LINE L1 -1926 3951 3394 2 696 2769 136 56 19 chr11 14632591 14633381 -107210475 - RMER17B LTR ERVK -61 897 1 2 696 540 0 0 0 chr11 14633410 14633470 -107210386 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 2 696 1243 62 11 11 chr11 14633470 14633648 -107210208 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 696 213 39 0 0 chr11 14633650 14633676 -107210180 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2 696 585 112 16 57 chr11 14633686 14633809 -107210047 - L1_Mus3 LINE L1 -7 6631 6514 2 696 4168 171 57 74 chr11 14633811 14634801 -107209055 - RLTR13C1 LTR ERVK -6 977 5 2 696 20629 160 75 13 chr11 14634801 14639291 -107204565 - L1_Mus3 LINE L1 -430 6208 1417 2 696 194 0 39 0 chr11 14639291 14639317 -107204539 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 696 20629 169 87 13 chr11 14639317 14639522 -107204334 - L1_Mus3 LINE L1 -4467 1416 1203 2 696 324 0 0 0 chr11 14639522 14639558 -107204298 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 696 3777 156 80 6 chr11 14639558 14640141 -107203715 - L1VL2 LINE L1 -5432 903 285 2 696 24 0 0 0 chr11 14640853 14640877 -107202979 + AT_rich Low_complexity Low_complexity 1 24 0 2 696 243 61 0 0 chr11 14640927 14640960 -107202896 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 696 21 0 0 0 chr11 14641517 14641538 -107202318 + AT_rich Low_complexity Low_complexity 1 21 0 2 696 407 108 0 24 chr11 14641772 14641857 -107201999 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 2 696 6806 223 97 20 chr11 14641858 14642027 -107201829 - L1_Mur3 LINE L1 -309 5571 5384 2 696 369 0 0 0 chr11 14642027 14642068 -107201788 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2 696 6806 223 97 20 chr11 14642068 14642146 -107201710 - L1_Mur3 LINE L1 -497 5383 5297 2 696 311 0 26 0 chr11 14642146 14642185 -107201671 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 696 1108 103 0 0 chr11 14642185 14642331 -107201525 - B1_Mus1 SINE Alu -2 146 1 2 696 6806 223 97 20 chr11 14642331 14642377 -107201479 - L1_Mur3 LINE L1 -584 5296 5247 2 696 570 71 0 0 chr11 14642377 14642461 -107201395 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 696 333 0 0 0 chr11 14642461 14642497 -107201359 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 696 6806 223 97 20 chr11 14642497 14644213 -107199643 - L1_Mur3 LINE L1 -634 5246 3407 2 696 5090 135 9 4 chr11 14644800 14645613 -107198243 - L1_Mus3 LINE L1 -77 5806 4990 2 696 5374 117 19 1 chr11 14645613 14646442 -107197414 + L1_Mus3 LINE L1 5795 6638 0 2 696 202 229 0 0 chr11 14646452 14646500 -107197356 + A-rich Low_complexity Low_complexity 1 48 0 2 696 21 0 0 0 chr11 14646526 14646547 -107197309 + AT_rich Low_complexity Low_complexity 1 21 0 2 696 279 306 40 57 chr11 14646580 14646763 -107197093 + MTD LTR MaLR 190 399 -20 2 696 1162 43 0 0 chr11 14647341 14647479 -107196377 - B1_Mus1 SINE Alu -8 140 3 2 696 3938 189 48 7 chr11 14647534 14648422 -107195434 - Lx4A LINE L1 -1 7057 6091 2 696 1754 246 61 119 chr11 14648421 14648652 -107195204 - Lx4A LINE L1 -193 5684 5454 2 696 4207 25 0 0 chr11 14648652 14649134 -107194722 - LTRIS_Mm LTR ERV1 0 482 1 2 696 4575 214 40 62 chr11 14649134 14650299 -107193557 - Lx4A LINE L1 -3643 2234 2057 2 696 300 53 0 0 chr11 14650299 14650337 -107193519 + (TGG)n Simple_repeat Simple_repeat 1 38 0 2 696 4575 165 49 19 chr11 14650337 14650505 -107193351 - Lx4A LINE L1 -3821 2056 1891 2 696 207 0 0 0 chr11 14650505 14650528 -107193328 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 696 4575 167 36 14 chr11 14650528 14651612 -107192244 - Lx4A LINE L1 -3987 1890 768 2 696 279 0 0 0 chr11 14651742 14651773 -107192083 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 696 287 284 14 0 chr11 14652363 14652437 -107191419 + BC1_Mm scRNA scRNA 11 85 -67 2 696 763 281 94 0 chr11 14652935 14653266 -107190590 + Lx9 LINE L1 7274 7635 -9 2 696 2478 284 91 32 chr11 14653978 14655040 -107188816 - Lx7 LINE L1 -2 7694 6560 2 696 1993 212 17 29 chr11 14655061 14655800 -107188056 - L1Md_F LINE L1 -1409 4474 3196 2 696 33013 84 7 5 chr11 14655796 14660377 -107183479 - L1Md_F2 LINE L1 -14 6568 1983 2 696 348 43 0 0 chr11 14660377 14660423 -107183433 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 696 33013 116 36 2 chr11 14660423 14661997 -107181859 - L1Md_F2 LINE L1 -3901 1982 349 2 696 4373 141 7 5 chr11 14661999 14662743 -107181113 - L1Md_F LINE L1 -1600 4283 3539 2 696 592 251 117 40 chr11 14662738 14663012 -107180844 - L1Md_F LINE L1 -5776 840 546 2 696 676 308 40 20 chr11 14663022 14663323 -107180533 - L1VL2 LINE L1 -5933 402 96 2 696 872 203 95 17 chr11 14663357 14663768 -107180088 - L1_Mur3 LINE L1 -4361 1519 1079 2 696 6921 86 5 11 chr11 14663787 14664729 -107179127 - L1_Mus1 LINE L1 -6 6561 5625 2 696 1878 327 50 22 chr11 14664751 14665608 -107178248 - L1_Mur3 LINE L1 -6661 1067 187 2 696 1367 275 88 69 chr11 14665610 14666156 -107177700 + RMER6A LTR ERVK 1 606 -84 2 696 938 67 88 15 chr11 14666156 14666293 -107177563 + B1_Mm SINE Alu 1 147 0 2 696 1367 257 30 129 chr11 14666293 14666526 -107177330 + RMER6A LTR ERVK 577 754 -2 2 696 237 326 20 0 chr11 14666534 14666632 -107177224 - L1_Mur3 LINE L1 -7301 411 312 2 696 6174 185 30 37 chr11 14666739 14668070 -107175786 + RMER12B LTR ERVK 1 1265 -139 2 696 411 98 0 0 chr11 14668070 14668131 -107175725 + (TATG)n Simple_repeat Simple_repeat 4 64 0 2 696 333 286 165 20 chr11 14668131 14668191 -107175665 + RMER12B LTR ERVK 1246 1309 -263 2 696 21 36 0 0 chr11 14668942 14668970 -107174886 + AT_rich Low_complexity Low_complexity 1 28 0 2 696 3362 75 53 30 chr11 14669853 14670360 -107173496 - MURVY-LTR LTR ERV1 0 519 1 2 696 462 332 39 39 chr11 14670430 14670659 -107173197 - MER2 DNA MER2_type -2 343 115 2 696 25 51 0 0 chr11 14671328 14671367 -107172489 + AT_rich Low_complexity Low_complexity 1 39 0 2 696 308 246 129 43 chr11 14671460 14671600 -107172256 - L1MEg LINE L1 -4141 1943 1792 2 696 402 248 19 19 chr11 14671847 14671950 -107171906 + B3 SINE B2 16 118 -98 2 696 241 24 23 47 chr11 14672531 14672574 -107171282 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 696 924 123 0 42 chr11 14672574 14672718 -107171138 - B1_Mur4 SINE Alu -11 139 2 2 696 11572 176 51 34 chr11 14672888 14675781 -107168075 - L1_Mus2 LINE L1 -561 6005 3055 2 696 783 0 0 0 chr11 14675781 14675868 -107167988 + (TTC)n Simple_repeat Simple_repeat 1 87 0 2 696 11572 190 58 40 chr11 14675868 14676044 -107167812 - L1_Mus2 LINE L1 -2829 3054 2879 2 696 7029 52 6 2 chr11 14676041 14676923 -107166933 - L1Md_F2 LINE L1 -2 6580 5696 2 696 7356 88 2 0 chr11 14676919 14678105 -107165751 - L1_Mus1 LINE L1 -9 6558 5371 2 696 4341 128 5 2 chr11 14678109 14678801 -107165055 + L1_Mm LINE L1 4701 5419 -2366 2 696 195 129 0 0 chr11 14679070 14679101 -107164755 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 696 475 274 45 0 chr11 14679383 14679540 -107164316 - Lx9 LINE L1 -1192 6452 6289 2 696 787 227 161 19 chr11 14679592 14680018 -107163838 - Lx9 LINE L1 -1560 6084 5559 2 697 423 0 0 0 chr11 14680954 14681001 -107162855 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 697 1760 104 0 20 chr11 14681067 14681322 -107162534 + L1_Mus4 LINE L1 6235 6484 -152 2 697 23 0 0 0 chr11 14681446 14681469 -107162387 + AT_rich Low_complexity Low_complexity 1 23 0 2 697 429 324 78 29 chr11 14681738 14681939 -107161917 + MTD LTR MaLR 191 399 -22 2 697 812 278 112 81 chr11 14682218 14682871 -107160985 + L1Md_F LINE L1 95 767 -5752 2 697 264 305 23 0 chr11 14682883 14682904 -107160952 + ORR1B1-int LTR MaLR 624 647 -862 2 697 817 133 0 0 chr11 14682904 14683017 -107160839 + B1_Mus2 SINE Alu 1 113 -34 2 697 192 77 0 0 chr11 14683019 14683045 -107160811 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 697 25066 126 6 17 chr11 14683045 14687931 -107155925 + L1_Mus1 LINE L1 1741 6567 0 2 697 512 16 0 0 chr11 14687935 14688033 -107155823 + L1Md_T LINE L1 6498 6582 0 2 697 306 176 0 0 chr11 14688073 14688158 -107155698 + A-rich Low_complexity Low_complexity 1 85 0 2 697 481 266 32 9 chr11 14688327 14688464 -107155392 + MTD LTR MaLR 256 405 -14 2 697 21 0 0 0 chr11 14688822 14688843 -107155013 + AT_rich Low_complexity Low_complexity 1 21 0 2 697 653 247 29 58 chr11 14689522 14689728 -107154128 + Lx8 LINE L1 6968 7167 -306 2 697 4148 181 72 3 chr11 14689728 14690923 -107152933 - ORR1A2-int LTR MaLR -699 1264 18 2 697 219 234 0 0 chr11 14690923 14690970 -107152886 + (CATA)n Simple_repeat Simple_repeat 1 47 0 2 697 385 294 100 0 chr11 14691025 14691195 -107152661 - L1_Mur3 LINE L1 -432 5448 5262 2 697 25159 149 25 48 chr11 14691221 14696547 -107147309 - L1Md_F LINE L1 -304 5579 395 2 697 231 36 0 0 chr11 14696563 14696591 -107147265 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2 697 321 318 8 86 chr11 14696690 14696774 -107147082 - Lx5 LINE L1 -157 6893 6819 2 697 3428 20 5 0 chr11 14696774 14697168 -107146688 - MTA_Mm LTR MaLR 0 396 1 2 697 2158 272 110 7 chr11 14697168 14697778 -107146078 - Lx5 LINE L1 -232 6818 6142 2 697 351 0 0 0 chr11 14699505 14699544 -107144312 + (A)n Simple_repeat Simple_repeat 1 39 0 2 697 211 309 10 41 chr11 14699847 14699945 -107143911 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 2 697 630 39 0 0 chr11 14700188 14700265 -107143591 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 697 569 346 33 51 chr11 14700325 14700660 -107143196 - MLT2B4 LTR ERVL -182 374 46 2 697 294 138 0 0 chr11 14700867 14700925 -107142931 + (A)n Simple_repeat Simple_repeat 1 58 0 2 697 220 330 42 21 chr11 14700927 14701023 -107142833 + B4 SINE B4 94 191 -101 2 697 237 65 0 0 chr11 14701109 14701140 -107142716 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 697 411 113 0 0 chr11 14701140 14701202 -107142654 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 697 189 0 0 0 chr11 14701576 14701597 -107142259 + (CTTTG)n Simple_repeat Simple_repeat 4 24 0 2 697 180 111 0 0 chr11 14701755 14701782 -107142074 + (TCC)n Simple_repeat Simple_repeat 3 29 0 2 697 2847 197 52 21 chr11 14702158 14702473 -107141383 + RMER6C LTR ERVK 2 324 -366 2 697 438 20 0 0 chr11 14702473 14702524 -107141332 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 697 2847 197 52 21 chr11 14702524 14702876 -107140980 + RMER6C LTR ERVK 325 690 0 2 697 575 99 137 0 chr11 14703031 14703162 -107140694 + BGLII LTR ERVK 111 259 -162 2 697 471 113 0 0 chr11 14703164 14703235 -107140621 + (GGGAA)n Simple_repeat Simple_repeat 5 75 0 3 697 513 371 11 6 chr11 14703236 14703492 -107140364 + polypurine Low_complexity Low_complexity 1 257 0 3 697 505 319 5 27 chr11 14703395 14703579 -107140277 + GA-rich Low_complexity Low_complexity 1 180 0 3 697 1762 201 3 18 chr11 14703596 14703981 -107139875 + RMER3D-int LTR ERVK 1155 1533 -1309 3 697 718 155 41 34 chr11 14704013 14704160 -107139696 + RMER3D-int LTR ERVK 1532 1679 -1163 3 697 3267 212 38 42 chr11 14704178 14705100 -107138756 + RMER3D-int LTR ERVK 1925 2842 0 3 697 2959 82 17 0 chr11 14705102 14705514 -107138342 + BGLII LTR ERVK 3 421 0 3 697 301 368 73 31 chr11 14705525 14705786 -107138070 + Lx8 LINE L1 7201 7472 -1 3 697 1872 234 18 0 chr11 14705842 14706223 -107137633 - Lx5 LINE L1 -191 6859 6472 3 697 685 280 32 0 chr11 14706223 14706412 -107137444 - RMER19C LTR ERVK 0 611 417 3 697 3088 187 26 2 chr11 14706432 14706974 -107136882 - RLTR17 LTR ERVK 0 692 138 3 697 1637 238 70 12 chr11 14706974 14707391 -107136465 - Lx5 LINE L1 -586 6464 6024 3 697 702 250 37 32 chr11 14707385 14707575 -107136281 + Lx4B LINE L1 6868 7058 0 3 697 921 91 0 22 chr11 14708775 14708910 -107134946 - B2_Mm2 SINE B2 -7 188 57 3 697 349 197 14 0 chr11 14708910 14708981 -107134875 - RMER17B LTR ERVK 0 958 887 3 697 11025 111 39 11 chr11 14708981 14710593 -107133263 - MERVK26-int LTR ERVK -4120 2799 1143 3 697 5626 112 9 4 chr11 14710595 14711405 -107132451 - MERVK26-int LTR ERVK -6039 880 67 3 697 228 35 0 0 chr11 14711408 14711437 -107132419 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 3 697 2447 157 71 2 chr11 14711443 14711909 -107131947 - RLTR26 LTR ERVK -144 498 1 3 697 545 346 100 34 chr11 14711939 14712259 -107131597 + ORR1E LTR MaLR 2 342 -17 3 697 1007 98 0 20 chr11 14712423 14712569 -107131287 - B1_Mus1 SINE Alu 0 148 6 3 697 356 16 66 0 chr11 14714118 14714179 -107129677 + (TTG)n Simple_repeat Simple_repeat 2 66 0 3 697 1121 62 7 20 chr11 14714214 14714363 -107129493 - B1_Mm SINE Alu 0 147 1 3 697 651 294 13 47 chr11 14715257 14715489 -107128367 - Lx8 LINE L1 -562 6911 6688 3 697 1383 243 48 83 chr11 14716219 14716592 -107127264 - ORR1B1 LTR MaLR 0 394 35 3 697 1088 95 0 0 chr11 14717102 14717249 -107126607 + B1_Mus2 SINE Alu 1 147 0 3 697 710 318 98 36 chr11 14717363 14717699 -107126157 - MTD LTR MaLR -14 405 49 3 697 333 330 25 8 chr11 14718140 14718259 -107125597 - B1F2 SINE Alu -27 122 2 3 697 189 74 0 0 chr11 14718696 14718723 -107125133 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 697 183 162 0 26 chr11 14719362 14719400 -107124456 - L3 LINE CR1 -4282 207 171 3 697 433 328 8 0 chr11 14720221 14720349 -107123507 + ID_B1 SINE B4 96 224 0 3 697 3918 217 31 28 chr11 14721455 14722485 -107121371 + Lx7 LINE L1 3598 4630 -1250 3 697 4362 230 44 29 chr11 14722536 14723853 -107120003 + Lx7 LINE L1 4629 5962 -1734 3 697 684 182 53 0 chr11 14723853 14723985 -107119871 - URR1B DNA MER1_type -1 224 86 3 697 242 389 63 77 chr11 14726180 14726361 -107117495 + ORR1E LTR MaLR 3 197 -162 3 697 189 0 0 0 chr11 14726361 14726382 -107117474 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 697 242 389 63 77 chr11 14726382 14726562 -107117294 + ORR1E LTR MaLR 198 358 -1 3 697 3352 257 40 30 chr11 14727610 14727739 -107116117 - Lx9 LINE L1 0 7644 7520 3 697 360 0 0 0 chr11 14727739 14727779 -107116077 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 697 3352 257 40 30 chr11 14727779 14728720 -107115136 - Lx9 LINE L1 -125 7519 6563 3 697 216 0 0 0 chr11 14728771 14728795 -107115061 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 697 2727 107 0 54 chr11 14728939 14729384 -107114472 - BGLII LTR ERVK 0 421 1 3 697 324 296 46 34 chr11 14729653 14729828 -107114028 + L1MB3 LINE L1 5931 6107 -76 3 697 886 59 8 0 chr11 14729876 14729995 -107113861 - B1_Mus1 SINE Alu 0 148 29 3 697 431 228 132 99 chr11 14729878 14730029 -107113827 - B4 SINE B4 -69 223 68 3 697 216 86 0 0 chr11 14730029 14730064 -107113792 + (T)n Simple_repeat Simple_repeat 1 35 0 3 697 598 309 125 23 chr11 14730095 14730695 -107113161 + L1MC1 LINE L1 4579 5239 -907 3 697 1085 313 94 6 chr11 14730741 14731368 -107112488 + L1MC1 LINE L1 5517 6198 -135 3 697 3870 163 114 6 chr11 14731492 14731593 -107112263 + Lx2B LINE L1 6180 6309 -691 3 697 3411 161 55 20 chr11 14731593 14732233 -107111623 - Lx LINE L1 -7 6647 5986 3 697 3870 163 114 6 chr11 14732233 14732851 -107111005 + Lx2B LINE L1 6310 6977 -23 3 697 25 0 0 0 chr11 14732857 14732882 -107110974 + AT_rich Low_complexity Low_complexity 1 25 0 3 697 22 35 0 0 chr11 14733260 14733289 -107110567 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 207 100 0 0 chr11 14734043 14734073 -107109783 + (A)n Simple_repeat Simple_repeat 1 30 0 3 697 687 135 0 23 chr11 14734252 14734381 -107109475 + Lx LINE L1 6528 6653 -1 3 697 305 347 58 25 chr11 14735189 14735431 -107108425 - L4 LINE RTE -1094 935 686 3 697 29 0 0 0 chr11 14737593 14737622 -107106234 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 617 290 110 25 chr11 14738215 14738718 -107105138 + L1_Mur3 LINE L1 1261 1813 -4034 3 697 4403 88 19 2 chr11 14738718 14739344 -107104512 + L1_Mus3 LINE L1 5990 6626 -12 3 697 500 302 101 83 chr11 14739344 14739566 -107104290 + L1_Mur3 LINE L1 1814 2011 -3836 3 697 479 349 37 52 chr11 14739637 14739906 -107103950 + ORR1E LTR MaLR 14 278 -81 3 697 266 320 8 0 chr11 14740006 14740131 -107103725 + L1_Mur2 LINE L1 2119 2244 -3633 3 697 278 267 108 29 chr11 14740199 14740338 -107103518 + Lx8 LINE L1 6787 6936 -537 3 697 2930 97 5 9 chr11 14740377 14740814 -107103042 - MusHAL1 LINE L1 -1360 1352 918 3 697 637 118 10 0 chr11 14740814 14740916 -107102940 + Lx2A LINE L1 5604 5706 -1302 3 697 1968 94 14 14 chr11 14740916 14741207 -107102649 - RLTR27 LTR ERVK 0 309 19 3 697 1239 146 85 38 chr11 14741210 14741415 -107102441 - MMERVK10C-int LTR ERVK -15 7566 7342 3 697 1306 47 6 0 chr11 14741415 14741585 -107102271 - L1Md_A LINE L1 0 6582 6412 3 697 1239 269 93 32 chr11 14741585 14741912 -107101944 - MMERVK10C-int LTR ERVK -240 7341 6907 3 697 421 240 40 45 chr11 14742015 14742216 -107101640 - MMERVK10C-int LTR ERVK -3256 4325 4126 3 697 4387 320 38 45 chr11 14742259 14745164 -107098692 - MMERVK10C-int LTR ERVK -3570 4011 1127 3 697 273 283 120 19 chr11 14745301 14745409 -107098447 - MMERVK10C-int LTR ERVK -6765 915 797 3 697 498 291 46 23 chr11 14745819 14745949 -107097907 - ETnERV2-int LTR ERVK -204 7202 7070 3 697 642 230 56 51 chr11 14746038 14746235 -107097621 - MMERVK10C-int LTR ERVK -1135 852 655 3 697 310 151 39 4 chr11 14746259 14746320 -107097536 - MMERVK10C-int LTR ERVK -7314 267 163 3 697 2026 112 16 10 chr11 14746345 14746652 -107097204 - RLTR27 LTR ERVK 0 309 1 3 697 2308 80 0 0 chr11 14746653 14746965 -107096891 + Lx LINE L1 5702 6013 -641 3 697 547 156 7 8 chr11 14746965 14747066 -107096790 - MTB_Mm LTR MaLR -319 100 1 3 697 237 158 0 0 chr11 14747066 14747103 -107096753 + ORR1A4 LTR MaLR 221 257 -72 3 697 1018 256 0 84 chr11 14747123 14747396 -107096460 + L1_Mur2 LINE L1 698 947 -6139 3 697 774 156 0 0 chr11 14747381 14747509 -107096347 + L1_Mus3 LINE L1 5061 5188 -695 3 697 6752 108 40 8 chr11 14747500 14748752 -107095104 + L1_Mus3 LINE L1 5334 6621 -17 3 697 1782 162 18 43 chr11 14748757 14748902 -107094954 + L1_Mur2 LINE L1 961 1107 -5979 3 697 1734 173 14 47 chr11 14748902 14749266 -107094590 + Lx3C LINE L1 6624 6975 -1 3 697 2810 143 39 21 chr11 14749266 14749938 -107093918 + L1_Mur2 LINE L1 1108 1784 -4093 3 697 26180 89 9 46 chr11 14749937 14751317 -107092539 - L1Md_F2 LINE L1 0 6582 5289 3 697 2768 63 0 11 chr11 14751317 14751685 -107092171 - L1Md_F2 LINE L1 -12 6570 6207 3 697 26180 92 26 144 chr11 14751685 14753564 -107090292 - L1Md_F2 LINE L1 -595 5288 3462 3 697 186 43 0 0 chr11 14753564 14753587 -107090269 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 697 4941 57 2 6 chr11 14753593 14754228 -107089628 - L1Md_F2 LINE L1 -13 6569 5938 3 697 26180 92 26 144 chr11 14754228 14756876 -107086980 - L1Md_F2 LINE L1 -2422 3461 1291 3 697 1302 118 5 0 chr11 14756885 14757089 -107086767 - Lx LINE L1 -590 6064 5860 3 697 825 189 0 0 chr11 14757090 14757233 -107086623 + L1_Mm LINE L1 4804 4946 -937 3 697 10374 20 0 1 chr11 14757221 14759104 -107084752 - L1Md_T LINE L1 0 6582 4702 3 697 5322 147 45 4 chr11 14759105 14760009 -107083847 + L1_Mm LINE L1 4924 5864 -19 3 697 243 277 24 0 chr11 14760457 14760540 -107083316 - Lx7 LINE L1 -1 7695 7611 3 697 4663 264 90 45 chr11 14760637 14761662 -107082194 - Lx7 LINE L1 -494 7202 6068 3 697 1498 98 4 13 chr11 14761662 14761889 -107081967 - L1_Mus2 LINE L1 0 6566 6342 3 697 4663 242 51 24 chr11 14761889 14762640 -107081216 - Lx7 LINE L1 -1629 6067 5351 3 697 31040 118 39 16 chr11 14762659 14768904 -107074952 - L1Md_F2 LINE L1 -16 6566 217 3 697 11069 160 52 29 chr11 14768905 14769182 -107074674 + L1_Mur2 LINE L1 1770 2049 -3828 3 697 462 88 0 0 chr11 14769182 14769250 -107074606 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 697 11069 160 52 29 chr11 14769250 14771345 -107072511 + L1_Mur2 LINE L1 2050 4197 -1680 3 697 2399 220 70 8 chr11 14771342 14771873 -107071983 + Lx4A LINE L1 6493 7056 -2 3 697 22 0 0 0 chr11 14771883 14771905 -107071951 + AT_rich Low_complexity Low_complexity 1 22 0 3 697 269 115 77 0 chr11 14771905 14771957 -107071899 + ORR1A4 LTR MaLR 274 329 0 3 697 1123 74 0 26 chr11 14772408 14772560 -107071296 + B1_Mus1 SINE Alu 1 148 0 3 697 1523 201 43 28 chr11 14773693 14774020 -107069836 - RLTR11A LTR ERVK 0 528 197 3 697 1390 141 12 24 chr11 14774033 14774288 -107069568 - L1_Mus3 LINE L1 -3 6635 6384 3 697 12133 146 7 7 chr11 14774293 14777156 -107066700 + L1_Mus4 LINE L1 3770 6634 -2 3 697 243 0 0 0 chr11 14777358 14777385 -107066471 + (TAA)n Simple_repeat Simple_repeat 1 27 0 3 697 666 306 46 32 chr11 14777502 14777785 -107066071 - MT2A LTR ERVL -241 292 6 3 697 200 195 0 0 chr11 14779982 14780023 -107063833 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 697 21 0 0 0 chr11 14780657 14780678 -107063178 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 3201 159 55 9 chr11 14781444 14782023 -107061833 - Lx2A1 LINE L1 -1 7007 6402 3 697 264 341 0 23 chr11 14782394 14782432 -107061424 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 697 591 78 0 0 chr11 14782432 14782522 -107061334 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 697 264 341 0 23 chr11 14782522 14782615 -107061241 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 697 519 146 52 11 chr11 14782616 14782739 -107061117 - RMER13B LTR ERVK -390 252 84 3 697 213 333 0 0 chr11 14783846 14783909 -107059947 - B4A SINE B4 -225 67 5 3 697 356 331 48 36 chr11 14784090 14784256 -107059600 + RMER15 LTR ERVL 372 539 -36 3 697 320 325 44 0 chr11 14784287 14784401 -107059455 + RMER15-int LTR ERVL 4 122 -4877 3 697 415 367 71 19 chr11 14786177 14786494 -107057362 + Lx8 LINE L1 6423 6759 -714 3 697 315 0 0 0 chr11 14786494 14786529 -107057327 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 697 415 367 71 19 chr11 14786529 14786589 -107057267 + Lx8 LINE L1 6760 6819 -654 3 697 1091 247 36 24 chr11 14786603 14786935 -107056921 + RLTR15 LTR ERVK 6 341 -18 3 697 284 265 40 89 chr11 14786948 14787072 -107056784 + RMER15-int LTR ERVL 4761 4878 -121 3 697 1366 155 107 12 chr11 14787256 14787582 -107056274 + Lx3_Mus LINE L1 5814 6170 -839 3 697 3620 156 129 22 chr11 14787589 14788349 -107055507 + MTA_Mm-int LTR MaLR 418 1258 0 3 697 2821 99 2 8 chr11 14788349 14788747 -107055109 + MTA_Mm LTR MaLR 1 396 0 3 697 605 189 9 0 chr11 14788747 14788853 -107055003 + Lx3_Mus LINE L1 6260 6366 -615 3 697 1758 102 4 25 chr11 14788851 14789132 -107054724 + L1_Mur1 LINE L1 1331 1605 -4281 3 697 535 153 20 0 chr11 14789129 14789227 -107054629 + L1_Mm LINE L1 5251 5350 -533 4 697 243 230 27 13 chr11 14789308 14789383 -107054473 - Lx8 LINE L1 -1297 6176 6101 4 697 358 322 125 28 chr11 14790803 14790821 -107053035 - B3A SINE B2 -5 193 177 4 697 372 43 0 0 chr11 14790821 14790867 -107052989 + (TATG)n Simple_repeat Simple_repeat 3 48 0 4 697 358 322 125 28 chr11 14790867 14791024 -107052832 - B3A SINE B2 -22 176 2 4 697 241 341 30 8 chr11 14792388 14792521 -107051335 - L1MA6 LINE L1 -22 6278 6143 4 697 227 393 17 8 chr11 14792733 14792851 -107051005 - MLT1E2 LTR MaLR -435 192 74 4 697 921 66 0 0 chr11 14793048 14793169 -107050687 + (GGGAA)n Simple_repeat Simple_repeat 1 121 0 4 697 24 53 0 0 chr11 14793683 14793721 -107050135 + AT_rich Low_complexity Low_complexity 1 38 0 4 697 255 345 11 11 chr11 14794427 14794518 -107049338 - RMER20B LTR ERVK -55 572 482 4 697 453 291 158 0 chr11 14794666 14794869 -107048987 - RMER20B LTR ERVK -159 468 234 4 697 291 54 0 0 chr11 14796488 14796525 -107047331 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 4 697 236 265 28 75 chr11 14796525 14796621 -107047235 - Lx4B LINE L1 -13 7045 6954 4 697 3142 31 51 0 chr11 14796621 14797012 -107046844 - IAPLTR2a LTR ERVK 0 411 1 4 697 6245 60 13 17 chr11 14797021 14797846 -107046010 - IAPEz-int LTR ERVK -9 6472 5651 4 697 10647 73 47 34 chr11 14797839 14799672 -107044184 - IAPEz-int LTR ERVK -4781 1700 9 4 697 3110 31 51 0 chr11 14799673 14800064 -107043792 - IAPLTR2a LTR ERVK 0 411 1 4 697 1182 187 15 0 chr11 14800078 14800281 -107043575 - Lx5 LINE L1 -128 6922 6717 4 697 474 358 27 6 chr11 14800281 14800456 -107043400 - B3A SINE B2 -43 173 1 4 697 24 0 0 0 chr11 14801386 14801410 -107042446 + AT_rich Low_complexity Low_complexity 1 24 0 4 697 767 277 83 21 chr11 14801428 14801668 -107042188 - MTE-int LTR MaLR -130 1450 1196 4 697 1278 223 117 3 chr11 14801871 14802173 -107041683 - Lx9 LINE L1 -161 7483 7146 4 697 995 197 27 9 chr11 14802173 14802393 -107041463 - URR1A DNA MER1_type 0 226 3 4 697 1278 223 117 3 chr11 14802393 14802414 -107041442 - Lx9 LINE L1 -499 7145 7123 4 697 406 276 13 58 chr11 14802466 14802620 -107041236 - Lx9 LINE L1 -487 7157 7011 4 697 978 236 76 125 chr11 14802754 14803187 -107040669 + RMER20B LTR ERVK 1 627 0 4 697 1164 261 76 20 chr11 14803805 14804160 -107039696 - MTD LTR MaLR 0 419 45 4 697 392 276 108 13 chr11 14804149 14804307 -107039549 - MTE-int LTR MaLR -187 1071 899 4 697 22 35 0 0 chr11 14804505 14804534 -107039322 + AT_rich Low_complexity Low_complexity 1 29 0 4 697 186 133 0 0 chr11 14805149 14805179 -107038677 + (T)n Simple_repeat Simple_repeat 1 30 0 4 697 300 27 0 0 chr11 14807023 14807060 -107036796 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 697 994 116 7 0 chr11 14807124 14807270 -107036586 - B1_Mm SINE Alu 0 147 1 4 697 380 364 79 16 chr11 14807270 14807460 -107036396 - B4A SINE B4 -62 230 29 4 697 459 0 0 0 chr11 14807831 14807882 -107035974 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 697 26540 115 14 40 chr11 14808056 14810884 -107032972 - L1_Mus2 LINE L1 -2 6564 3750 4 87 2398 82 9 9 chr11 14810884 14811229 -107032627 - L1Md_F2 LINE L1 0 6582 6238 4 698 26540 127 19 59 chr11 14811229 14812050 -107031806 - L1_Mus2 LINE L1 -2134 3749 3134 4 698 219 36 0 0 chr11 14812050 14812078 -107031778 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 698 26540 127 19 59 chr11 14812078 14812972 -107030884 - L1_Mus2 LINE L1 -2750 3133 2222 4 698 180 0 0 0 chr11 14812972 14812992 -107030864 + (C)n Simple_repeat Simple_repeat 1 20 0 4 698 26540 176 57 78 chr11 14812992 14814944 -107028912 - L1_Mus2 LINE L1 -3662 2221 220 4 698 657 377 126 48 chr11 14814974 14815194 -107028662 + MER21B LTR ERV1 59 304 -559 4 698 207 0 0 0 chr11 14815194 14815217 -107028639 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 698 657 377 126 48 chr11 14815217 14815741 -107028115 + MER21B LTR ERV1 305 860 -3 4 698 35322 36 0 0 chr11 14815876 14821101 -107022755 + L1Md_T LINE L1 268 5589 -297 4 698 8980 5 0 0 chr11 14821101 14822097 -107021759 + L1Md_T LINE L1 5590 6585 0 4 698 192 40 0 0 chr11 14822117 14822142 -107021714 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4 698 516 32 0 0 chr11 14822517 14822579 -107021277 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 698 235 316 14 57 chr11 14822612 14822753 -107021103 + L1_Mur3 LINE L1 162 296 -7432 4 698 823 247 100 4 chr11 14822772 14823052 -107020804 + L1_Mur3 LINE L1 860 1166 -6562 4 698 4270 103 30 0 chr11 14823052 14823674 -107020182 - L1_Mus3 LINE L1 -3 6635 5995 4 698 4306 125 0 2 chr11 14823691 14824326 -107019530 + L1_Mm LINE L1 5231 5864 -19 4 698 6163 218 38 77 chr11 14824367 14826359 -107017497 + L1_Mur3 LINE L1 1162 3060 -2820 4 698 2332 233 43 24 chr11 14826359 14826895 -107016961 - MERVL_2A-int LTR ERVL -454 5307 4762 4 698 1907 53 0 0 chr11 14827027 14827270 -107016586 - L1Md_A LINE L1 0 6582 6340 4 698 4114 231 45 68 chr11 14827277 14828361 -107015495 - MERVL_2A-int LTR ERVL -1048 4713 3655 4 698 1409 300 95 118 chr11 14828365 14829271 -107014585 + Lx6 LINE L1 6576 7460 0 4 698 15250 207 65 25 chr11 14829294 14831364 -107012492 - MERVL_2A-int LTR ERVL -2184 3577 1409 4 698 181 80 0 0 chr11 14831364 14831389 -107012467 + L2 LINE L2 1872 1896 -1523 4 698 15250 207 65 25 chr11 14831389 14832703 -107011153 - MERVL_2A-int LTR ERVL -2184 1408 30 4 698 210 71 0 0 chr11 14834200 14834228 -107009628 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 4 698 23 0 0 0 chr11 14835225 14835248 -107008608 + AT_rich Low_complexity Low_complexity 1 23 0 4 698 299 154 15 0 chr11 14835486 14835551 -107008305 + (TTG)n Simple_repeat Simple_repeat 2 67 0 4 698 201 167 0 0 chr11 14835543 14835597 -107008259 + T-rich Low_complexity Low_complexity 1 54 0 4 698 479 292 78 80 chr11 14835817 14836186 -107007670 + MTD LTR MaLR 7 417 -2 4 698 751 256 70 120 chr11 14836513 14836553 -107007303 - RLTR20B3 LTR ERVK -30 498 459 4 698 342 67 0 0 chr11 14836553 14836598 -107007258 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 698 854 256 70 120 chr11 14836598 14836983 -107006873 - RLTR20B3 LTR ERVK -109 468 95 4 698 21 0 0 0 chr11 14837454 14837475 -107006381 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 967 335 67 8 chr11 14837504 14837880 -107005976 - MTD LTR MaLR 0 419 22 4 698 22 35 0 0 chr11 14838264 14838293 -107005563 + AT_rich Low_complexity Low_complexity 1 29 0 4 698 1033 280 86 47 chr11 14838652 14839038 -107004818 - Lx9 LINE L1 -442 7202 6802 4 698 687 282 117 47 chr11 14839520 14839918 -107003938 - RMER13A LTR ERVK -373 535 100 4 698 1159 287 63 18 chr11 14840143 14840702 -107003154 - Lx6 LINE L1 -54 7406 6455 4 698 198 0 0 0 chr11 14840702 14840724 -107003132 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 4 698 718 310 12 43 chr11 14840724 14840847 -107003009 - Lx6 LINE L1 -705 6755 6638 4 698 273 336 0 70 chr11 14841948 14842063 -107001793 - B1F2 SINE Alu 0 149 43 4 698 35 41 0 0 chr11 14842384 14842433 -107001423 + AT_rich Low_complexity Low_complexity 1 49 0 4 698 482 292 39 29 chr11 14842880 14843088 -107000768 + L1MB2 LINE L1 5658 5867 -304 4 698 200 216 0 0 chr11 14843117 14843154 -107000702 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 4 698 5228 118 130 10 chr11 14843170 14844048 -106999808 + RLTR13C1 LTR ERVK 1 983 0 4 698 269 261 43 96 chr11 14844442 14844605 -106999251 - RMER19C LTR ERVK -134 477 343 4 698 225 362 0 70 chr11 14844638 14844724 -106999132 + RSINE1 SINE B4 85 164 -1 4 698 186 43 0 0 chr11 14844768 14844791 -106999065 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 698 935 264 71 114 chr11 14844836 14845332 -106998524 + RMER4B LTR ERVK 1 580 -31 4 698 447 68 0 0 chr11 14845856 14845915 -106997941 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 698 180 0 0 0 chr11 14845915 14845934 -106997922 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 698 468 0 0 0 chr11 14845934 14845985 -106997871 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 698 471 323 50 80 chr11 14846304 14846543 -106997313 - MTEa LTR MaLR -146 233 2 4 698 321 26 0 0 chr11 14848416 14848454 -106995402 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 698 198 71 0 0 chr11 14848456 14848484 -106995372 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 698 524 304 42 42 chr11 14849551 14849908 -106993948 - L1MA4 LINE L1 -376 5924 5568 4 698 468 0 0 0 chr11 14849927 14849979 -106993877 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 698 333 0 0 0 chr11 14850024 14850061 -106993795 + (T)n Simple_repeat Simple_repeat 1 37 0 4 698 3553 180 14 6 chr11 14850094 14850760 -106993096 + L1_Mur2 LINE L1 5207 5877 0 4 698 374 362 14 0 chr11 14850915 14851053 -106992803 + MER54A LTR ERVL 36 175 -726 4 698 780 42 0 0 chr11 14851285 14851381 -106992475 + (GAA)n Simple_repeat Simple_repeat 3 98 0 4 698 372 167 0 56 chr11 14851381 14851489 -106992367 + G-rich Low_complexity Low_complexity 2 103 0 4 698 889 327 44 21 chr11 14851503 14851843 -106992013 - Lx6 LINE L1 -28 7432 7085 4 698 350 389 67 31 chr11 14851915 14852305 -106991551 + MER54A LTR ERVL 459 862 -39 4 698 597 364 69 9 chr11 14852663 14852996 -106990860 - Lx8 LINE L1 -199 7274 6922 4 698 706 293 161 29 chr11 14853149 14854068 -106989788 + L1_Rod LINE L1 1454 2493 -3354 4 698 628 283 59 23 chr11 14854091 14854395 -106989461 + Lx7 LINE L1 5599 5913 -1783 4 698 4994 114 11 24 chr11 14854624 14855413 -106988443 + L1VL4 LINE L1 194 972 -5330 4 698 739 160 0 45 chr11 14855409 14855566 -106988290 + Lx LINE L1 4260 4409 -1477 4 698 502 185 0 0 chr11 14855543 14855624 -106988232 - Lx LINE L1 -204 6450 6370 4 698 5612 182 40 10 chr11 14855624 14857380 -106986476 + Lx LINE L1 4849 6642 -12 4 698 226 261 0 0 chr11 14857455 14857501 -106986355 + Lx9 LINE L1 7351 7396 -248 4 698 448 213 16 0 chr11 14857954 14858081 -106985775 + Lx9 LINE L1 7510 7638 -6 4 698 446 353 99 28 chr11 14858125 14858408 -106985448 + Lx8 LINE L1 6222 6524 -949 4 698 1264 338 33 11 chr11 14858545 14859084 -106984772 + Lx8 LINE L1 6696 7246 -227 4 698 2875 80 14 2 chr11 14859087 14859503 -106984353 + BGLII LTR ERVK 1 421 0 4 698 22 0 0 0 chr11 14859566 14859588 -106984268 + AT_rich Low_complexity Low_complexity 1 22 0 4 698 2854 15 0 0 chr11 14859706 14860034 -106983822 - L1Md_A LINE L1 -2 6580 6253 4 698 342 332 102 11 chr11 14860257 14860300 -106983556 - L1M2 LINE L1 -1544 4602 4551 4 698 240 111 0 0 chr11 14860300 14860336 -106983520 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 698 363 332 102 11 chr11 14860336 14860478 -106983378 - L1M2 LINE L1 -1596 4550 4397 4 698 611 294 59 10 chr11 14860484 14860687 -106983169 - B3 SINE B2 0 216 4 4 698 26 30 0 0 chr11 14860720 14860753 -106983103 + AT_rich Low_complexity Low_complexity 1 33 0 4 698 602 297 18 28 chr11 14861639 14861857 -106981999 + B3 SINE B2 1 216 0 4 698 223 328 0 0 chr11 14862670 14862731 -106981125 + ID4_ SINE ID 22 82 -1 4 698 225 61 0 0 chr11 14863113 14863123 -106980733 + (TA)n Simple_repeat Simple_repeat 1 10 0 4 698 405 0 0 0 chr11 14863123 14863168 -106980688 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 698 225 61 0 0 chr11 14863168 14863190 -106980666 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 698 1046 122 0 0 chr11 14863191 14863338 -106980518 - B1_Mus2 SINE Alu 0 147 1 5 698 664 295 29 24 chr11 14863773 14863978 -106979878 + B3 SINE B2 1 206 -10 5 698 233 65 0 42 chr11 14864084 14864132 -106979724 - L1_Mus4 LINE L1 -7 6629 6584 5 698 226 226 9 0 chr11 14864331 14864437 -106979419 + CT-rich Low_complexity Low_complexity 1 106 0 5 698 25 0 0 0 chr11 14866893 14866918 -106976938 + AT_rich Low_complexity Low_complexity 1 25 0 5 698 369 0 0 0 chr11 14868991 14869032 -106974824 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 698 483 60 0 0 chr11 14869033 14869100 -106974756 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 698 22 0 0 0 chr11 14869119 14869141 -106974715 + AT_rich Low_complexity Low_complexity 1 22 0 5 698 21 0 0 0 chr11 14869422 14869443 -106974413 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 2001 247 40 17 chr11 14869908 14870435 -106973421 - RLTR20B3 LTR ERVK 0 577 39 5 698 1149 71 12 6 chr11 14870829 14870999 -106972857 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 5 698 205 115 115 0 chr11 14871008 14871060 -106972796 + (TCTCTG)n Simple_repeat Simple_repeat 6 63 0 5 698 270 0 0 0 chr11 14871065 14871095 -106972761 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 698 411 21 0 0 chr11 14871095 14871143 -106972713 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 698 506 393 0 0 chr11 14871532 14871695 -106972161 + RSINE1 SINE B4 3 165 0 5 698 724 275 63 22 chr11 14872021 14872244 -106971612 + Lx5 LINE L1 6055 6286 -764 5 698 986 221 60 9 chr11 14872219 14872452 -106971404 + Lx5 LINE L1 6806 7050 0 5 698 25640 89 16 12 chr11 14872662 14877062 -106966794 - L1Md_F2 LINE L1 0 6582 2146 5 698 11123 3 0 0 chr11 14877060 14879007 -106964849 - L1Md_A LINE L1 0 6582 4636 5 698 6778 75 2 5 chr11 14879005 14879204 -106964652 - L1Md_F2 LINE L1 -3721 2162 1968 5 698 243 0 0 0 chr11 14879204 14879231 -106964625 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 698 6778 140 51 34 chr11 14879231 14880962 -106962894 - L1Md_F2 LINE L1 -3916 1967 217 5 698 723 260 208 26 chr11 14883059 14883221 -106960635 + RMER17C LTR ERVK 1 220 -190 5 698 468 0 0 0 chr11 14883221 14883273 -106960583 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 698 246 32 0 0 chr11 14883273 14883303 -106960553 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 698 723 260 208 26 chr11 14883303 14883486 -106960370 + RMER17C LTR ERVK 221 409 -1 5 698 239 321 72 117 chr11 14883936 14884158 -106959698 + B3 SINE B2 5 216 0 5 698 503 318 61 25 chr11 14884510 14884707 -106959149 - B3 SINE B2 -7 209 6 5 698 207 0 0 0 chr11 14885280 14885303 -106958553 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 698 204 226 0 0 chr11 14885396 14885449 -106958407 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 5 698 329 199 8 10 chr11 14886032 14886161 -106957695 + T-rich Low_complexity Low_complexity 1 128 0 5 698 956 113 35 0 chr11 14886161 14886303 -106957553 - B1_Mus2 SINE Alu 0 147 1 5 698 329 227 0 21 chr11 14886303 14886383 -106957473 + T-rich Low_complexity Low_complexity 2 81 0 5 698 270 273 0 146 chr11 14886383 14886486 -106957370 - PB1D9 SINE Alu 0 120 33 5 698 6827 51 0 0 chr11 14886508 14887347 -106956509 + L1Md_T LINE L1 5744 6582 0 5 698 781 378 30 30 chr11 14887470 14887803 -106956053 + MTEa LTR MaLR 21 353 -26 5 698 763 241 109 10 chr11 14887983 14888184 -106955672 - URR1A DNA MER1_type 0 226 6 5 698 25370 142 40 11 chr11 14888396 14894439 -106949417 + L1_Mus3 LINE L1 411 6633 -5 5 698 253 374 37 0 chr11 14894576 14894669 -106949187 - B1F SINE Alu -11 109 13 5 698 1187 55 7 0 chr11 14895390 14895535 -106948321 + B1_Mm SINE Alu 1 146 -1 5 698 282 79 31 16 chr11 14895535 14895599 -106948257 + (CAAA)n Simple_repeat Simple_repeat 1 65 0 5 698 1149 66 0 0 chr11 14895682 14895833 -106948023 + (CATATA)n Simple_repeat Simple_repeat 5 155 0 5 698 832 247 19 0 chr11 14895843 14896001 -106947855 - B3 SINE B2 -51 165 5 5 698 22 0 0 0 chr11 14896060 14896082 -106947774 + AT_rich Low_complexity Low_complexity 1 22 0 5 698 17609 134 54 38 chr11 14896113 14897360 -106946496 - L1_Mus3 LINE L1 -8 6989 5662 5 698 4661 118 10 10 chr11 14897360 14898081 -106945775 + L1_Mus3 LINE L1 5910 6630 -8 5 698 198 0 0 0 chr11 14898085 14898107 -106945749 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 698 17609 195 88 12 chr11 14898107 14900296 -106943560 - L1_Mus3 LINE L1 -222 5664 3312 5 698 243 0 0 0 chr11 14900296 14900323 -106943533 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 698 17609 195 88 12 chr11 14900323 14900416 -106943440 - L1_Mus3 LINE L1 -2575 3311 3180 5 698 225 0 0 0 chr11 14900416 14900441 -106943415 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 698 17609 194 74 19 chr11 14900441 14902866 -106940990 - L1_Mus3 LINE L1 -2707 3179 616 5 698 398 278 126 21 chr11 14902947 14903138 -106940718 + L1MB1 LINE L1 5847 6057 -132 5 698 216 0 0 0 chr11 14903736 14903760 -106940096 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 5 698 369 0 0 0 chr11 14904141 14904182 -106939674 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 698 327 149 0 0 chr11 14904182 14904256 -106939600 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 698 279 54 0 0 chr11 14904487 14904524 -106939332 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 5 698 567 0 0 0 chr11 14904576 14904639 -106939217 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 698 550 49 12 12 chr11 14905167 14905250 -106938606 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 698 2524 238 32 17 chr11 14905286 14905919 -106937937 - Lx9 LINE L1 -206 7438 6797 5 698 11532 114 12 6 chr11 14906193 14907572 -106936284 - L1_Mus2 LINE L1 -436 6130 4732 5 698 294 29 0 0 chr11 14907572 14907607 -106936249 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 698 11532 129 18 10 chr11 14907607 14908346 -106935510 - L1_Mus2 LINE L1 -1152 4731 3997 5 698 1658 87 94 0 chr11 14908348 14908602 -106935254 + ORR1A1 LTR MaLR 1 278 -68 5 698 6745 95 0 1 chr11 14908602 14909521 -106934335 - L1_Mus1 LINE L1 -47 6520 5603 5 698 188 0 74 0 chr11 14909521 14909548 -106934308 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 698 3566 126 2 2 chr11 14909604 14910153 -106933703 - L1_Mus1 LINE L1 -487 5396 4848 5 698 3169 190 46 6 chr11 14910155 14910786 -106933070 - Lx4A LINE L1 -69 6989 6334 5 698 26 30 0 0 chr11 14910954 14910987 -106932869 + AT_rich Low_complexity Low_complexity 1 33 0 5 698 1246 234 53 29 chr11 14911104 14911385 -106932471 + ORR1C1 LTR MaLR 1 288 -90 5 698 286 337 49 10 chr11 14911376 14911478 -106932378 - PB1D10 SINE Alu -7 110 5 5 698 493 352 61 20 chr11 14912178 14912563 -106931293 - MTD LTR MaLR -2 417 16 5 698 223 368 76 42 chr11 14912672 14912791 -106931065 - MIR3 SINE MIR -45 163 41 5 698 1558 220 40 8 chr11 14912821 14913174 -106930682 + RLTR14 LTR ERV1 19 382 0 5 698 1755 203 99 13 chr11 14913267 14913651 -106930205 - MTC LTR MaLR 0 421 5 5 698 333 0 0 0 chr11 14914253 14914290 -106929566 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 698 276 204 27 27 chr11 14914366 14914477 -106929379 - Lx9 LINE L1 -117 7527 7417 5 698 2047 233 29 40 chr11 14915396 14915976 -106927880 - Lx9 LINE L1 -159 7485 6912 5 698 231 114 0 0 chr11 14916205 14916240 -106927616 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 698 3444 202 35 7 chr11 14916322 14917089 -106926767 + L1_Mur2 LINE L1 4813 5601 -276 5 698 5082 225 45 17 chr11 14917096 14917753 -106926103 + L1_Mur2 LINE L1 4360 5101 -782 5 698 3790 169 11 0 chr11 14917753 14918410 -106925446 + Lx2 LINE L1 6334 6997 0 5 698 5082 185 12 20 chr11 14918410 14919204 -106924652 + L1_Mur2 LINE L1 5096 5877 0 5 698 30 0 0 0 chr11 14919393 14919423 -106924433 + AT_rich Low_complexity Low_complexity 1 30 0 5 698 846 309 79 26 chr11 14919602 14920102 -106923754 - MTD-int LTR MaLR -218 1040 399 5 698 711 256 52 59 chr11 14920099 14920389 -106923467 - MTD-int LTR MaLR -970 288 1 5 698 1418 265 52 26 chr11 14920407 14920791 -106923065 - MTD LTR MaLR -23 396 3 5 698 292 309 21 0 chr11 14921727 14921821 -106922035 + GA-rich Low_complexity Low_complexity 1 96 0 5 698 561 346 80 64 chr11 14923758 14923805 -106920051 - L1M4 LINE L1 -1828 4318 4269 5 698 1564 48 0 0 chr11 14923805 14923992 -106919864 - B2_Mm1t SINE B2 -4 189 3 5 698 561 346 80 64 chr11 14923992 14924706 -106919150 - L1M4 LINE L1 -1878 4268 3545 5 698 262 391 43 9 chr11 14925080 14925196 -106918660 + B4 SINE B4 84 203 -89 5 698 228 247 0 64 chr11 14925196 14925274 -106918582 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 5 698 1500 181 7 0 chr11 14925555 14925825 -106918031 - L1_Mm LINE L1 -925 4958 4687 5 698 689 289 39 24 chr11 14926110 14926316 -106917540 + B3 SINE B2 8 216 0 5 698 418 315 182 44 chr11 14926332 14926651 -106917205 + MTEb LTR MaLR 17 379 0 5 698 21 71 0 0 chr11 14926672 14926714 -106917142 + AT_rich Low_complexity Low_complexity 1 42 0 5 698 540 257 22 7 chr11 14926716 14926853 -106917003 + B1_Mus1 SINE Alu 1 139 -9 5 698 324 0 0 0 chr11 14926856 14926892 -106916964 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 698 392 314 84 30 chr11 14926906 14927161 -106916695 - MER77 LTR ERVL -129 478 198 5 698 3129 152 11 6 chr11 14928091 14928615 -106915241 - Lx2 LINE L1 -1 6996 6470 5 698 4853 166 42 1 chr11 14928615 14929635 -106914221 + Lx2 LINE L1 5454 6495 -502 5 698 2926 23 12 3 chr11 14929745 14930088 -106913768 + ORR1A0 LTR MaLR 1 346 0 5 698 13498 63 9 1 chr11 14930088 14931863 -106911993 + ORR1A0-int LTR MaLR 1 1789 -3 5 698 2980 23 3 3 chr11 14931863 14932207 -106911649 + ORR1A0 LTR MaLR 1 346 0 5 698 662 287 39 15 chr11 14932247 14932452 -106911404 + B3 SINE B2 2 211 -5 5 698 22 35 0 0 chr11 14932531 14932560 -106911296 + AT_rich Low_complexity Low_complexity 1 29 0 5 698 4589 138 12 4 chr11 14932804 14933541 -106910315 + Lx2A1 LINE L1 6261 7003 -5 5 698 280 353 50 16 chr11 14933840 14933961 -106909895 + B1F SINE Alu 15 139 -10 5 698 4981 176 33 10 chr11 14934121 14935051 -106908805 - RMER17B LTR ERVK 0 958 7 5 698 459 0 0 0 chr11 14935052 14935103 -106908753 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 698 423 0 0 0 chr11 14935292 14935339 -106908517 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 698 451 316 56 31 chr11 14935355 14935675 -106908181 - RLTR15 LTR ERVK -26 333 6 5 698 3623 244 52 20 chr11 14935676 14936744 -106907112 - MYSERV-int LTR ERVK 0 6550 5448 5 698 675 25 0 0 chr11 14936763 14936844 -106907012 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 698 390 289 76 38 chr11 14936852 14937010 -106906846 - MYSERV-int LTR ERVK -1318 5232 5069 5 698 1912 260 56 42 chr11 14937025 14937996 -106905860 - MYSERV-int LTR ERVK -1781 4769 4072 5 698 751 186 0 102 chr11 14937999 14938196 -106905660 - MYSERV6-int LTR ERVK -7220 1739 1563 5 698 1148 174 34 13 chr11 14938335 14938574 -106905282 - MYSERV6-int LTR ERVK -268 8691 8448 6 698 1594 68 0 0 chr11 14938579 14938786 -106905070 + L1_Mus1 LINE L1 6361 6567 0 6 698 1422 232 22 8 chr11 14938967 14939324 -106904532 - MYSERV6-int LTR ERVK -7511 1448 1087 5 698 352 245 29 29 chr11 14939317 14939422 -106904434 + MYSERV-int LTR ERVK 334 438 -6112 6 698 993 298 14 14 chr11 14939420 14939787 -106904069 - MYSERV6-int LTR ERVK -7877 1082 716 5 698 506 289 106 33 chr11 14940580 14940925 -106902931 - MTD LTR MaLR -14 405 10 6 698 267 378 30 0 chr11 14941247 14941382 -106902474 - MER20 DNA MER1_type -42 177 39 6 698 31 44 0 0 chr11 14941990 14942035 -106901821 + AT_rich Low_complexity Low_complexity 1 45 0 6 699 337 298 35 9 chr11 14942412 14942527 -106901329 + RMER30 DNA MER1_type 25 142 -60 6 699 439 318 49 15 chr11 14943155 14943359 -106900497 - B3 SINE B2 -1 215 5 6 699 516 348 95 40 chr11 14943933 14944280 -106899576 - MTEa LTR MaLR 0 379 14 6 699 459 362 18 18 chr11 14944485 14944500 -106899356 - RSINE1 SINE B4 0 165 151 6 699 803 102 8 0 chr11 14944500 14944628 -106899228 + (GGGAGA)n Simple_repeat Simple_repeat 5 133 0 6 699 459 362 18 18 chr11 14944628 14944775 -106899081 - RSINE1 SINE B4 -15 150 3 6 699 234 397 127 14 chr11 14944958 14945170 -106898686 - Tigger5 DNA MER2_type -2170 236 1 6 699 1085 115 0 0 chr11 14945460 14945608 -106898248 + B1_Mus1 SINE Alu 1 148 0 6 699 567 0 0 0 chr11 14945612 14945675 -106898181 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 6 699 8420 30 0 0 chr11 14946385 14947373 -106896483 + L1Md_A LINE L1 5593 6580 -2 6 699 5962 161 31 14 chr11 14947481 14949141 -106894715 - Lx LINE L1 -5 6649 4960 6 699 1395 166 33 133 chr11 14950266 14950656 -106893200 - L1_Mur2 LINE L1 -932 4945 4595 6 699 8110 48 3 2 chr11 14950661 14951771 -106892085 - L1Md_F3 LINE L1 0 6584 5474 6 699 2687 136 61 2 chr11 14951766 14952223 -106891633 + L1_Mm LINE L1 5032 5515 -368 6 699 2199 142 3 0 chr11 14952219 14952579 -106891277 - L1_Mur2 LINE L1 -1265 4612 4252 6 699 24 32 0 0 chr11 14953642 14953673 -106890183 + AT_rich Low_complexity Low_complexity 1 31 0 6 699 910 174 0 0 chr11 14954586 14954730 -106889126 - B1_Mus1 SINE Alu -3 145 2 6 699 2159 266 73 42 chr11 14955293 14956050 -106887806 - Lx6 LINE L1 -1 7459 6680 6 699 4029 66 4 6 chr11 14956287 14956820 -106887036 - L1Md_F2 LINE L1 0 6582 6051 6 699 16907 51 2 0 chr11 14956820 14959144 -106884712 + L1Md_F2 LINE L1 3737 6062 -520 6 699 31 26 0 0 chr11 14959836 14959874 -106883982 + AT_rich Low_complexity Low_complexity 1 38 0 6 699 33 0 0 0 chr11 14960186 14960219 -106883637 + AT_rich Low_complexity Low_complexity 1 33 0 6 699 195 62 60 40 chr11 14960318 14960368 -106883488 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 699 1565 349 73 14 chr11 14960426 14961432 -106882424 - Lx9 LINE L1 -180 7464 6400 6 699 1233 205 51 28 chr11 14961446 14961726 -106882130 + ORR1A2 LTR MaLR 43 339 -39 6 699 5564 118 16 11 chr11 14961726 14962563 -106881293 - Lx LINE L1 -104 6550 5710 6 699 389 192 0 39 chr11 14962563 14962666 -106881190 + Lx LINE L1 6550 6648 -6 6 699 986 148 6 0 chr11 14962680 14962856 -106881000 + GA-rich Low_complexity Low_complexity 2 178 0 6 699 391 75 0 0 chr11 14962893 14962946 -106880910 + ORR1A2 LTR MaLR 272 324 -2 6 699 2558 157 70 4 chr11 14962948 14963403 -106880453 + ORR1A2-int LTR MaLR 1 485 -1478 6 699 1290 180 9 4 chr11 14963390 14963619 -106880237 + ORR1A2 LTR MaLR 27 256 -71 6 699 1814 103 0 7 chr11 14963619 14963893 -106879963 - Lx LINE L1 -368 5518 5247 6 699 5958 119 76 1 chr11 14963893 14964856 -106879000 + Lx3_Mus LINE L1 5975 7009 0 6 699 336 85 0 0 chr11 14964868 14964915 -106878941 + ORR1A3 LTR MaLR 272 318 -8 6 699 22 0 0 0 chr11 14964950 14964972 -106878884 + AT_rich Low_complexity Low_complexity 1 22 0 6 699 1205 267 66 24 chr11 14965071 14965676 -106878180 - Lx9 LINE L1 -1673 6023 5359 6 699 1014 122 0 0 chr11 14966109 14966257 -106877599 + B1_Mus1 SINE Alu 1 148 0 6 699 572 0 15 0 chr11 14966371 14966439 -106877417 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 6 699 286 286 168 7 chr11 14966968 14967123 -106876733 + B3A SINE B2 3 182 -16 6 699 675 37 0 0 chr11 14968023 14968105 -106875751 + (TC)n Simple_repeat Simple_repeat 2 83 0 6 699 908 312 56 13 chr11 14968130 14968435 -106875421 + MTEa LTR MaLR 60 377 -2 6 699 25 0 0 0 chr11 14969000 14969025 -106874831 + AT_rich Low_complexity Low_complexity 1 25 0 6 699 351 0 0 0 chr11 14969787 14969826 -106874030 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 699 2738 228 58 24 chr11 14969922 14970293 -106873563 + L1_Mur3 LINE L1 3572 3959 -1921 6 699 225 0 0 0 chr11 14970293 14970318 -106873538 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 699 2738 228 58 24 chr11 14970318 14970781 -106873075 + L1_Mur3 LINE L1 3960 4433 -1447 6 699 5167 227 47 20 chr11 14970786 14972120 -106871736 + Lx2B LINE L1 5587 6998 -60 6 699 22 0 0 0 chr11 14972125 14972147 -106871709 + AT_rich Low_complexity Low_complexity 1 22 0 6 699 576 338 47 17 chr11 14973063 14973424 -106870432 + Lx9 LINE L1 7078 7449 -195 6 699 618 252 45 98 chr11 14973639 14973863 -106869993 - RMER19C LTR ERVK 0 611 400 6 699 31326 69 16 30 chr11 14973863 14978513 -106865343 + L1Md_F LINE L1 293 4932 -951 6 699 227 183 46 77 chr11 14978513 14978578 -106865278 - RMER20A LTR ERVK -268 248 186 6 699 31326 69 16 30 chr11 14978578 14979231 -106864625 + L1Md_F LINE L1 4933 5585 -298 6 699 8689 21 0 0 chr11 14979232 14980228 -106863628 + L1Md_A LINE L1 5587 6582 0 6 699 10601 81 0 10 chr11 14980230 14981686 -106862170 + L1Md_F2 LINE L1 4144 5585 -298 6 699 7348 80 0 18 chr11 14981687 14982701 -106861155 + L1Md_F2 LINE L1 5587 6582 0 6 699 642 293 76 12 chr11 14982710 14982955 -106860901 - RMER19C LTR ERVK -223 514 220 6 699 886 264 10 86 chr11 14982973 14983276 -106860580 - RMER19C LTR ERVK -331 280 1 6 699 269 68 23 0 chr11 14985464 14985508 -106858348 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 699 34 0 0 0 chr11 14985743 14985777 -106858079 + AT_rich Low_complexity Low_complexity 1 34 0 6 699 22 0 0 0 chr11 14986025 14986047 -106857809 + AT_rich Low_complexity Low_complexity 1 22 0 6 699 210 150 0 0 chr11 14986582 14986622 -106857234 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 699 23 0 0 0 chr11 14986943 14986966 -106856890 + AT_rich Low_complexity Low_complexity 1 23 0 6 699 210 312 0 0 chr11 14987397 14987474 -106856382 + T-rich Low_complexity Low_complexity 1 77 0 6 699 1108 83 6 0 chr11 14987480 14987636 -106856220 - L1_Mus1 LINE L1 0 6567 6411 6 699 1746 74 0 0 chr11 14987636 14987866 -106855990 + L1_Mus1 LINE L1 5922 6151 -416 6 699 457 54 0 139 chr11 14988493 14988579 -106855277 - ETnERV2-int LTR ERVK -2 7404 7331 6 699 304 123 103 17 chr11 14988579 14988637 -106855219 - RLTR13B1 LTR ERVK -363 539 477 6 699 872 109 18 60 chr11 14988704 14988868 -106854988 - RLTR13B1 LTR ERVK -690 333 167 6 699 2890 205 90 68 chr11 14988868 14989742 -106854114 + RLTR13D6 LTR ERVK 1 894 -8 6 699 955 184 12 6 chr11 14989743 14989913 -106853943 - RLTR13D6 LTR ERVK -731 171 1 6 699 1388 174 12 12 chr11 14989920 14990176 -106853680 - ETnERV3-int LTR ERVK -24 5784 5529 6 699 336 111 15 60 chr11 14990189 14990256 -106853600 - RLTR45-int LTR ERVK -1172 6072 6009 6 699 693 104 16 57 chr11 14990325 14990447 -106853409 - ETnERV2-int LTR ERVK -955 6451 6335 6 699 27 49 0 0 chr11 14990938 14990979 -106852877 + AT_rich Low_complexity Low_complexity 1 41 0 6 699 804 325 96 31 chr11 14991131 14991484 -106852372 + MTEa LTR MaLR 1 376 -3 6 699 525 327 64 21 chr11 14992405 14992986 -106850870 + L1M2 LINE L1 4678 5283 -860 6 699 302 382 56 46 chr11 14992990 14993185 -106850671 + B4A SINE B4 84 280 -12 6 699 249 57 0 0 chr11 14993192 14993227 -106850629 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 6 699 302 305 111 21 chr11 14993255 14993568 -106850288 + L1M2 LINE L1 5262 5609 -688 6 699 21 82 0 0 chr11 14993711 14993760 -106850096 + AT_rich Low_complexity Low_complexity 1 49 0 6 699 213 388 82 7 chr11 14993809 14993944 -106849912 + ID_B1 SINE B4 80 224 0 6 699 377 39 20 0 chr11 14993963 14994014 -106849842 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 699 387 60 0 0 chr11 14994486 14994536 -106849320 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 699 233 231 45 27 chr11 14994544 14994655 -106849201 + Lx9 LINE L1 7532 7644 0 6 699 255 61 0 0 chr11 14994726 14994759 -106849097 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 699 508 286 134 0 chr11 14994759 14995028 -106848828 - Lx9 LINE L1 -76 7568 7264 6 699 1036 274 39 76 chr11 14996780 14997135 -106846721 + Lx6 LINE L1 7108 7449 -11 6 699 270 0 0 0 chr11 14997384 14997414 -106846442 + (T)n Simple_repeat Simple_repeat 1 30 0 6 699 2084 181 71 2 chr11 14997825 14998247 -106845609 - Lx4B LINE L1 -948 6110 5660 6 699 3741 219 50 29 chr11 14998256 14998509 -106845347 + Lx4B LINE L1 6123 6376 -682 6 699 3608 36 7 5 chr11 14998509 14998953 -106844903 + L1Md_F3 LINE L1 6140 6584 0 6 699 3741 219 50 29 chr11 14998953 14999609 -106844247 + Lx4B LINE L1 6377 7052 -6 6 699 23 33 0 0 chr11 14999842 14999872 -106843984 + AT_rich Low_complexity Low_complexity 1 30 0 6 699 9305 115 26 2 chr11 15000612 15001041 -106842815 + Lx3_Mus LINE L1 5494 5922 -1087 1 699 273 57 0 0 chr11 15001041 15001076 -106842780 + (ATG)n Simple_repeat Simple_repeat 2 36 0 2 699 9305 114 29 1 chr11 15001076 15002129 -106841727 + Lx3_Mus LINE L1 5923 7008 -1 1 699 523 325 81 50 chr11 15002361 15002720 -106841136 - ORR1D2 LTR MaLR 0 370 1 3 699 33 0 0 0 chr11 15002864 15002897 -106840959 + AT_rich Low_complexity Low_complexity 1 33 0 4 699 964 277 95 33 chr11 15002911 15003300 -106840556 + MTD LTR MaLR 3 415 -4 5 699 13522 157 15 83 chr11 15003342 15004920 -106838936 + L1VL4 LINE L1 330 1782 -1833 6 699 279 0 0 0 chr11 15004920 15004951 -106838905 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 699 222 37 0 0 chr11 15004951 15004977 -106838879 + (GA)n Simple_repeat Simple_repeat 2 28 0 8 699 13522 129 22 10 chr11 15004977 15006436 -106837420 + L1VL4 LINE L1 1783 3257 -358 6 699 7202 113 11 3 chr11 15006436 15007908 -106835948 + L1_Mus3 LINE L1 5157 6638 0 9 699 22 0 0 0 chr11 15009864 15009886 -106833970 + AT_rich Low_complexity Low_complexity 1 22 0 1 699 351 96 0 0 chr11 15010255 15010307 -106833549 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 699 7321 106 25 27 chr11 15010308 15011569 -106832287 - Lx3_Mus LINE L1 -231 6778 5528 1 699 313 264 51 13 chr11 15011568 15011725 -106832131 + L1M3 LINE L1 4500 4662 -1478 1 699 2821 77 8 25 chr11 15011898 15012299 -106831557 - MTA_Mm LTR MaLR -2 394 1 1 699 238 261 211 35 chr11 15012395 15012566 -106831290 - L1MCb LINE L1 -5276 769 569 1 699 430 321 75 5 chr11 15012558 15012746 -106831110 - Lx6 LINE L1 -2 7458 7258 1 699 1773 235 99 43 chr11 15012909 15013446 -106830410 - RMER2 LTR ERV1 0 567 1 1 699 774 227 143 0 chr11 15013602 15013818 -106830038 - RMER1C Other Other -26 1316 1070 1 699 273 333 10 0 chr11 15015764 15015860 -106827996 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 699 279 213 38 51 chr11 15015942 15016021 -106827835 - Lx4B LINE L1 -518 6540 6463 2 699 833 210 49 19 chr11 15016015 15016302 -106827554 + Lx4A LINE L1 5817 6041 -940 2 699 209 213 21 0 chr11 15016324 15016371 -106827485 + GA-rich Low_complexity Low_complexity 3 50 0 2 699 3941 120 10 2 chr11 15016430 15017031 -106826825 - Lx3_Mus LINE L1 -8 7001 6396 2 699 2005 83 4 0 chr11 15017031 15017295 -106826561 - Lx3_Mus LINE L1 -1106 5875 5611 2 699 2412 140 16 3 chr11 15017296 15017714 -106826142 + L1_Mur1 LINE L1 5253 5697 -2185 2 699 373 359 0 22 chr11 15019297 15019431 -106824425 - ID_B1 SINE B4 -2 222 92 2 699 423 92 0 0 chr11 15020424 15020489 -106823367 + (CCA)n Simple_repeat Simple_repeat 1 65 0 2 699 303 49 0 0 chr11 15020489 15020530 -106823326 + (CAA)n Simple_repeat Simple_repeat 3 43 0 2 699 22 35 0 0 chr11 15020891 15020920 -106822936 + AT_rich Low_complexity Low_complexity 1 29 0 2 699 926 27 13 33 chr11 15021556 15021707 -106822149 + (TCTA)n Simple_repeat Simple_repeat 1 148 0 2 699 2181 168 146 29 chr11 15021707 15021883 -106821973 - Lx3C LINE L1 -15 6961 6780 3 699 5843 136 9 36 chr11 15021883 15022868 -106820988 - RMER17B LTR ERVK 0 958 1 3 699 2181 168 146 29 chr11 15022868 15023205 -106820651 - Lx3C LINE L1 -197 6779 6388 3 699 983 137 0 0 chr11 15023380 15023526 -106820330 + B1_Mus1 SINE Alu 1 146 -2 3 699 23 0 0 0 chr11 15023539 15023562 -106820294 + AT_rich Low_complexity Low_complexity 1 23 0 3 699 2014 123 3 89 chr11 15023834 15024192 -106819664 - ORR1A2 LTR MaLR 0 327 1 3 699 23 33 0 0 chr11 15024246 15024276 -106819580 + AT_rich Low_complexity Low_complexity 1 30 0 3 699 437 312 93 31 chr11 15024892 15025054 -106818802 + ORR1D2 LTR MaLR 5 176 -194 3 699 468 0 0 0 chr11 15026671 15026723 -106817133 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 699 22 0 0 0 chr11 15026769 15026791 -106817065 + AT_rich Low_complexity Low_complexity 1 22 0 3 699 231 314 76 35 chr11 15027627 15027772 -106816084 + L2a LINE L2 2988 3138 -288 3 699 1324 272 102 51 chr11 15027900 15028282 -106815574 - RLTR20A LTR ERVK -2 539 157 4 699 2943 74 2 12 chr11 15028282 15028692 -106815164 + L1Md_F2 LINE L1 6174 6579 -3 4 699 1324 272 102 51 chr11 15028692 15028821 -106815035 - RLTR20A LTR ERVK -385 156 3 4 699 180 299 70 56 chr11 15028875 15028946 -106814910 + L2a LINE L2 3304 3375 0 3 699 21 57 0 0 chr11 15029968 15030003 -106813853 + AT_rich Low_complexity Low_complexity 1 35 0 4 699 448 307 70 47 chr11 15030047 15030218 -106813638 - B3A SINE B2 -16 182 8 4 699 22 56 0 0 chr11 15030228 15030264 -106813592 + AT_rich Low_complexity Low_complexity 1 36 0 4 699 458 231 85 0 chr11 15030961 15031091 -106812765 + RLTR11A2 LTR ERVK 1 141 -386 4 699 3083 169 37 22 chr11 15031091 15031679 -106812177 + Lx2B LINE L1 6404 7000 0 4 699 1197 62 0 0 chr11 15031684 15031830 -106812026 + B1_Mm SINE Alu 2 147 0 4 699 324 70 0 0 chr11 15031830 15031873 -106811983 + (A)n Simple_repeat Simple_repeat 1 43 0 4 699 31 61 0 35 chr11 15031885 15031970 -106811886 + AT_rich Low_complexity Low_complexity 1 82 0 4 699 929 288 52 18 chr11 15031972 15032298 -106811558 + RLTR11A2 LTR ERVK 136 472 -55 4 699 233 223 202 18 chr11 15032301 15032415 -106811441 - Lx9 LINE L1 -106 7538 7404 5 699 519 179 0 0 chr11 15032499 15032605 -106811251 + T-rich Low_complexity Low_complexity 1 106 0 5 699 1416 249 32 0 chr11 15032605 15032918 -106810938 - ORR1D1 LTR MaLR -51 323 1 5 699 3816 118 17 7 chr11 15033128 15033727 -106810129 - Lx3_Mus LINE L1 -1 7008 6404 5 699 400 315 0 0 chr11 15033741 15033871 -106809985 - Lx9 LINE L1 -803 6841 6712 5 699 749 264 69 16 chr11 15033872 15034061 -106809795 - MTD LTR MaLR -220 199 1 5 699 6159 156 12 3 chr11 15036215 15037674 -106806182 - Lx LINE L1 -2 6652 5176 5 699 284 215 108 46 chr11 15037679 15037805 -106806051 - Lx LINE L1 -909 4977 4858 5 699 1751 120 0 53 chr11 15038000 15038300 -106805556 - L1Md_F2 LINE L1 -10 6572 6289 5 699 23 68 0 0 chr11 15038442 15038486 -106805370 + AT_rich Low_complexity Low_complexity 1 44 0 5 699 270 231 0 0 chr11 15038796 15038861 -106804995 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 699 300 27 0 0 chr11 15039816 15039853 -106804003 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 699 217 85 20 60 chr11 15039994 15040044 -106803812 + (TTATA)n Simple_repeat Simple_repeat 2 49 0 6 699 599 326 109 37 chr11 15040045 15041221 -106802635 - L1_Mur3 LINE L1 -3303 2577 1317 6 699 512 291 90 20 chr11 15041228 15041582 -106802274 - L1_Rod LINE L1 -6303 869 491 6 699 189 0 0 0 chr11 15041612 15041633 -106802223 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 699 11070 174 55 6 chr11 15042280 15043093 -106800763 - L1_Mm LINE L1 -165 5718 4813 6 699 702 34 0 0 chr11 15043093 15043182 -106800674 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 6 699 11070 174 55 6 chr11 15043182 15044595 -106799261 - L1_Mm LINE L1 -1071 4812 3386 6 699 315 307 0 0 chr11 15044595 15044670 -106799186 + B3 SINE B2 132 206 -10 6 699 21 82 0 0 chr11 15044983 15045032 -106798824 + AT_rich Low_complexity Low_complexity 1 49 0 6 699 34 24 0 0 chr11 15045119 15045160 -106798696 + AT_rich Low_complexity Low_complexity 1 41 0 6 699 1592 209 121 154 chr11 15045266 15045978 -106797878 + RMER6C LTR ERVK 1 688 -2 7 699 442 319 63 26 chr11 15046205 15046395 -106797461 - B3A SINE B2 0 198 2 7 699 25 0 0 0 chr11 15046665 15046690 -106797166 + AT_rich Low_complexity Low_complexity 1 25 0 7 699 1023 116 0 0 chr11 15047231 15047378 -106796478 + B1_Mus2 SINE Alu 1 147 0 7 699 6584 143 18 2 chr11 15047829 15049289 -106794567 - Lx LINE L1 -1 6653 5176 7 699 2137 210 2 4 chr11 15049291 15049741 -106794115 + L1_Mur2 LINE L1 4665 5113 -764 7 699 1520 246 45 2 chr11 15050038 15050388 -106793468 + L1_Mur1 LINE L1 900 1263 -5721 7 699 261 57 0 0 chr11 15050388 15050423 -106793433 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 699 1520 217 87 0 chr11 15050423 15050783 -106793073 + L1_Mur1 LINE L1 1256 1651 -4226 7 699 3406 205 68 24 chr11 15050893 15051757 -106792099 + L1_Mur1 LINE L1 2079 2980 -2897 7 699 3924 109 7 0 chr11 15051927 15052479 -106791377 - L1_Mus3 LINE L1 -6 6632 6077 7 699 14508 151 24 11 chr11 15052479 15055764 -106788092 - L1VL4 LINE L1 -2253 3890 529 7 699 555 67 0 0 chr11 15056750 15056825 -106787031 - B1_Mm SINE Alu 0 147 73 8 699 21 36 0 0 chr11 15056890 15056918 -106786938 + AT_rich Low_complexity Low_complexity 1 28 0 8 699 351 250 0 0 chr11 15057404 15057484 -106786372 - Lx8 LINE L1 -214 7259 7180 8 699 3722 224 75 104 chr11 15057484 15057715 -106786141 + Lx4A LINE L1 1813 2048 -3829 8 699 192 40 0 0 chr11 15057715 15057740 -106786116 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 699 3722 224 75 104 chr11 15057740 15058016 -106785840 + Lx4A LINE L1 2049 2349 -3528 8 699 2841 149 2 6 chr11 15058016 15058488 -106785368 + Lx LINE L1 6180 6649 -5 8 699 3722 224 75 104 chr11 15058488 15060058 -106783798 + Lx4A LINE L1 2350 3832 -2045 8 699 5447 155 13 18 chr11 15060057 15060996 -106782860 + Lx LINE L1 5713 6646 -8 8 699 660 149 178 26 chr11 15061001 15061153 -106782703 + Lx4A LINE L1 3836 4010 -1867 8 699 1470 151 20 229 chr11 15061155 15061697 -106782159 + Lx4A LINE L1 4224 4652 -1225 8 699 315 71 0 0 chr11 15061706 15061748 -106782108 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 699 216 86 0 0 chr11 15061761 15061796 -106782060 + (A)n Simple_repeat Simple_repeat 1 35 0 8 699 533 157 65 0 chr11 15061834 15061942 -106781914 + Lx4A LINE L1 5351 5465 -412 8 699 2736 179 116 20 chr11 15061942 15062528 -106781328 - RLTR26 LTR ERVK 0 642 1 8 699 3133 158 12 3 chr11 15062528 15063207 -106780649 + Lx4A LINE L1 5460 6158 -900 8 699 304 342 33 33 chr11 15064626 15064747 -106779109 + PB1 SINE Alu 1 121 -6 9 699 1273 331 12 19 chr11 15064963 15065379 -106778477 + MTD LTR MaLR 7 419 0 9 699 2563 220 45 42 chr11 15066203 15067261 -106776595 + L1Md_F LINE L1 387 1403 -2514 9 699 3101 176 44 9 chr11 15067260 15067922 -106775934 + L1Md_A LINE L1 446 1113 -5611 9 699 2812 9 3 0 chr11 15067922 15068243 -106775613 - RLTRETN_Mm LTR ERVK 0 322 1 9 699 41953 20 0 6 chr11 15068243 15073114 -106770742 - MMETn-int LTR ERVK 0 4844 1 9 87 2812 9 3 0 chr11 15073114 15073435 -106770421 - RLTRETN_Mm LTR ERVK 0 322 1 9 700 33535 78 5 3 chr11 15073435 15078166 -106765690 + L1Md_A LINE L1 1084 5823 -60 9 700 3631 58 0 6 chr11 15078166 15078633 -106765223 + L1Md_F2 LINE L1 6118 6581 -1 9 700 33535 136 1515 7 chr11 15078633 15080414 -106763442 + L1Md_A LINE L1 5824 5829 -54 9 700 251 28 28 0 chr11 15080414 15080450 -106763406 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 9 700 25507 128 28 7 chr11 15080450 15083370 -106760486 + L1_Mus2 LINE L1 3179 6190 -376 9 700 3340 99 34 34 chr11 15083533 15084317 -106759539 - MMETn-int LTR ERVK -4272 3134 1730 9 700 6755 103 9 28 chr11 15084331 15085383 -106758473 - MMETn-int LTR ERVK -3538 1306 274 9 700 1054 180 4 112 chr11 15085432 15085701 -106758155 - MMETn-int LTR ERVK -4595 249 10 9 700 1470 153 27 66 chr11 15085709 15086044 -106757812 - RLTRETN_Mm LTR ERVK 0 322 1 9 700 2374 132 0 71 chr11 15086044 15086451 -106757405 + L1_Mus2 LINE L1 6189 6566 0 9 700 201 138 0 0 chr11 15086460 15086489 -106757367 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 9 700 271 301 26 99 chr11 15086669 15086982 -106756874 + L1M4 LINE L1 3330 3619 -2527 1 700 40297 15 1 6 chr11 15087056 15093258 -106750598 - L1Md_A LINE L1 -1 6581 416 1 700 310 342 67 41 chr11 15093466 15093734 -106750122 + L1MC3 LINE L1 3829 4103 -2043 1 700 322 302 39 31 chr11 15093759 15093889 -106749967 + B1F SINE Alu 1 131 -18 1 700 396 314 61 0 chr11 15093889 15094003 -106749853 + B1F SINE Alu 19 131 -18 1 700 407 339 0 8 chr11 15093998 15094117 -106749739 + B1F SINE Alu 14 131 -18 1 700 392 356 0 8 chr11 15094112 15094231 -106749625 + B1F SINE Alu 14 131 -18 1 700 407 339 0 8 chr11 15094226 15094345 -106749511 + B1F SINE Alu 14 131 -18 1 700 401 347 0 8 chr11 15094340 15094459 -106749397 + B1F SINE Alu 14 131 -18 1 700 417 330 0 8 chr11 15094454 15094573 -106749283 + B1F SINE Alu 14 131 -18 1 700 473 319 0 15 chr11 15094568 15094705 -106749151 + B1F SINE Alu 14 148 -1 1 700 24 67 0 0 chr11 15094807 15094852 -106749004 + AT_rich Low_complexity Low_complexity 1 45 0 1 700 231 324 28 35 chr11 15094920 15095064 -106748792 + L1MC3 LINE L1 4723 4865 -1281 1 700 23 0 0 0 chr11 15095092 15095115 -106748741 + AT_rich Low_complexity Low_complexity 1 23 0 1 700 5268 123 16 16 chr11 15095372 15096203 -106747653 + Lx3_Mus LINE L1 6179 7009 0 1 700 599 313 56 14 chr11 15096482 15096838 -106747018 + L1MC3 LINE L1 5524 5894 -1891 1 700 4140 120 0 5 chr11 15096880 15097509 -106746347 + L1_Mus4 LINE L1 6009 6634 -2 1 700 210 147 0 0 chr11 15097882 15097916 -106745940 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 700 361 314 22 70 chr11 15098084 15098269 -106745587 + L1MC3 LINE L1 7456 7631 -154 1 700 24 32 0 0 chr11 15098278 15098309 -106745547 + AT_rich Low_complexity Low_complexity 1 31 0 1 700 965 321 146 47 chr11 15098522 15099121 -106744735 - Lx8 LINE L1 -326 7147 6450 1 700 1893 97 7 11 chr11 15099121 15099402 -106744454 + L1_Mus2 LINE L1 6287 6566 0 1 700 965 321 146 47 chr11 15099402 15099772 -106744084 - Lx8 LINE L1 -1024 6449 6082 1 700 573 303 92 35 chr11 15099888 15100292 -106743564 - Lx8 LINE L1 -1548 5925 5468 1 700 815 308 52 25 chr11 15102420 15102783 -106741073 - Lx8 LINE L1 -189 7284 6912 1 700 27 0 0 0 chr11 15103290 15103317 -106740539 + AT_rich Low_complexity Low_complexity 1 27 0 1 700 26 50 0 0 chr11 15104113 15104153 -106739703 + AT_rich Low_complexity Low_complexity 1 40 0 1 700 3504 234 38 33 chr11 15104261 15105278 -106738578 + Lx2B LINE L1 5923 7050 -8 1 700 406 364 43 9 chr11 15106043 15106254 -106737602 + ID_B1 SINE B4 4 221 -3 1 700 8822 179 18 147 chr11 15107127 15108568 -106735288 + Lx LINE L1 3778 5217 -666 1 700 609 14 0 0 chr11 15108568 15108638 -106735218 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1 700 8822 179 18 147 chr11 15108638 15108680 -106735176 + Lx LINE L1 5218 5252 -631 1 700 1218 201 125 7 chr11 15108680 15108976 -106734880 - ORR1D1 LTR MaLR -30 344 14 1 700 8822 179 18 147 chr11 15108976 15109024 -106734832 + Lx LINE L1 5253 5293 -590 1 700 497 90 11 0 chr11 15109024 15109113 -106734743 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 700 8822 152 23 43 chr11 15109113 15110460 -106733396 + Lx LINE L1 5294 6653 -1 1 700 541 273 30 15 chr11 15110929 15111063 -106732793 + B1_Mus1 SINE Alu 6 141 -7 1 700 21 36 0 0 chr11 15111072 15111100 -106732756 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 265 274 63 16 chr11 15112111 15112237 -106731619 + L1_Mur2 LINE L1 2339 2470 -3410 1 700 3208 222 74 12 chr11 15112760 15114035 -106729821 + Lx LINE L1 5259 6636 -18 1 700 1661 126 11 0 chr11 15114040 15114301 -106729555 - Lx2A1 LINE L1 -4 7004 6741 1 700 424 137 0 31 chr11 15114303 15114401 -106729455 + Lx2A1 LINE L1 6046 6140 -868 1 700 2527 153 40 13 chr11 15114438 15114889 -106728967 + Lx3A LINE L1 6513 6975 -6 1 700 545 230 33 7 chr11 15114905 15115058 -106728798 + L1_Mur2 LINE L1 3444 3600 -2277 1 700 695 323 103 26 chr11 15115066 15115768 -106728088 + L1M2 LINE L1 4127 4882 -1261 1 700 426 345 77 31 chr11 15116047 15116618 -106727238 + L1_Mur3 LINE L1 5194 5790 -90 1 700 32 81 0 0 chr11 15116697 15116771 -106727085 + AT_rich Low_complexity Low_complexity 1 74 0 1 700 1028 97 13 27 chr11 15116910 15117046 -106726810 + B1_Mus2 SINE Alu 1 138 -9 1 700 207 0 0 0 chr11 15117046 15117069 -106726787 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 700 1028 97 13 27 chr11 15117069 15117081 -106726775 + B1_Mus2 SINE Alu 139 147 0 1 700 199 98 39 19 chr11 15117595 15117647 -106726209 + A-rich Low_complexity Low_complexity 4 56 0 1 700 2394 133 10 13 chr11 15118339 15118735 -106725121 + Lx3A LINE L1 6584 6978 -3 1 700 14836 147 12 18 chr11 15119468 15121898 -106721958 - L1_Mm LINE L1 -294 5589 3171 1 700 2265 139 32 17 chr11 15121898 15122301 -106721555 + RLTR9E LTR ERVK 1 409 0 1 700 14836 147 12 18 chr11 15122301 15122518 -106721338 - L1_Mm LINE L1 -2713 3170 2957 1 700 4917 84 6 0 chr11 15122510 15123174 -106720682 + L1_Mus3 LINE L1 5589 6256 -382 1 700 2020 87 14 11 chr11 15123174 15123469 -106720387 + MTA_Mm LTR MaLR 97 395 -1 1 700 652 273 57 0 chr11 15123579 15123755 -106720101 + B3 SINE B2 2 187 -29 1 700 252 0 0 0 chr11 15123755 15123783 -106720073 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 700 354 350 31 18 chr11 15124404 15124567 -106719289 - MER45C DNA Tip100 -732 221 57 1 700 402 21 0 0 chr11 15125166 15125213 -106718643 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 700 983 214 42 133 chr11 15126269 15126626 -106717230 + L1_Mur2 LINE L1 889 1248 -5838 1 700 686 116 14 48 chr11 15126626 15126771 -106717085 + L1_Mus3 LINE L1 6499 6638 0 1 700 3286 210 18 41 chr11 15126771 15127657 -106716199 + L1_Mur2 LINE L1 1243 2072 -3805 1 700 222 118 0 0 chr11 15127657 15127691 -106716165 + (CCA)n Simple_repeat Simple_repeat 3 36 0 1 700 3098 11 0 76 chr11 15127691 15128088 -106715768 + IAPLTR1_Mm LTR ERVK 1 367 0 1 700 55357 23 17 2 chr11 15128088 15134469 -106709387 + IAPEz-int LTR ERVK 8 6481 0 1 700 3098 11 0 76 chr11 15134469 15134866 -106708990 + IAPLTR1_Mm LTR ERVK 1 367 0 1 700 773 234 21 0 chr11 15134874 15135066 -106708790 + L1_Mur2 LINE L1 2061 2256 -3621 1 700 226 278 28 0 chr11 15135071 15135143 -106708713 + L1_Mur2 LINE L1 5349 5422 -464 1 700 1895 172 23 34 chr11 15135151 15135537 -106708319 + L1_Mur2 LINE L1 5382 5763 -114 1 700 7907 175 15 8 chr11 15135528 15137245 -106706611 + Lx2 LINE L1 5271 6997 0 1 700 4360 239 80 29 chr11 15137252 15138474 -106705382 + Lx5 LINE L1 5756 7040 -10 1 700 214 106 21 21 chr11 15138558 15138606 -106705250 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 700 1127 89 0 0 chr11 15138638 15138784 -106705072 + B1_Mm SINE Alu 2 147 0 1 700 215 304 99 43 chr11 15138865 15139006 -106704850 - L2 LINE L2 -2456 963 815 1 700 2925 79 15 5 chr11 15139282 15139690 -106704166 - BGLII LTR ERVK 0 421 10 1 700 23 33 0 0 chr11 15139747 15139777 -106704079 + AT_rich Low_complexity Low_complexity 1 30 0 1 700 372 43 0 0 chr11 15140052 15140098 -106703758 + (T)n Simple_repeat Simple_repeat 1 46 0 1 700 268 310 68 42 chr11 15140526 15140644 -106703212 - MLT1B LTR MaLR -233 157 37 1 700 199 330 20 71 chr11 15140687 15140785 -106703071 - MIRc SINE MIR -147 121 29 1 700 327 49 0 0 chr11 15141342 15141383 -106702473 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 700 240 35 0 0 chr11 15141706 15141735 -106702121 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 700 590 320 38 38 chr11 15141742 15142031 -106701825 - B4A SINE B4 -2 290 2 1 700 328 321 73 40 chr11 15142577 15142824 -106701032 + Lx8 LINE L1 7209 7463 -10 1 700 31 26 0 0 chr11 15142827 15142865 -106700991 + AT_rich Low_complexity Low_complexity 1 38 0 1 700 4525 138 10 95 chr11 15143481 15144271 -106699585 - RMER17D LTR ERVK 0 889 177 1 700 3247 16 0 0 chr11 15144271 15144646 -106699210 - L1Md_A LINE L1 0 6582 6208 1 700 4525 138 10 95 chr11 15144646 15144826 -106699030 - RMER17D LTR ERVK -713 176 1 1 700 322 370 38 87 chr11 15144905 15145192 -106698664 + B4A SINE B4 14 286 -6 1 700 237 274 32 0 chr11 15145200 15145295 -106698561 + L1MD LINE L1 3597 3694 -2452 1 700 891 307 56 20 chr11 15145308 15145823 -106698033 + L1M2 LINE L1 4094 4631 -1512 1 700 261 57 0 0 chr11 15145823 15145858 -106697998 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 700 891 307 56 20 chr11 15145858 15145931 -106697925 + L1M2 LINE L1 4632 4703 -1440 1 700 461 294 136 31 chr11 15146067 15146457 -106697399 + L1_Mur3 LINE L1 5287 5748 -132 1 700 387 0 0 0 chr11 15146617 15146660 -106697196 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 700 36 0 0 0 chr11 15146797 15146833 -106697023 + AT_rich Low_complexity Low_complexity 1 36 0 1 700 598 329 42 19 chr11 15148742 15149002 -106694854 - Tigger1 DNA MER2_type -1355 1063 798 1 700 327 129 140 0 chr11 15149002 15149095 -106694761 + L1_Mus4 LINE L1 6531 6636 0 1 700 326 213 5 9 chr11 15149180 15149271 -106694585 + MIR SINE MIR 96 192 -76 1 700 752 364 102 17 chr11 15149275 15149915 -106693941 - Tigger1 DNA MER2_type -1613 805 112 1 700 324 0 0 0 chr11 15149915 15149951 -106693905 + (A)n Simple_repeat Simple_repeat 1 36 0 1 700 227 247 0 83 chr11 15150823 15150907 -106692949 - Charlie2b DNA MER1_type -1048 1734 1658 1 700 297 267 58 0 chr11 15151279 15151365 -106692491 + L1MA6 LINE L1 6188 6278 -22 1 700 30 0 0 0 chr11 15151578 15151608 -106692248 + AT_rich Low_complexity Low_complexity 1 30 0 1 700 2866 93 0 7 chr11 15151620 15152032 -106691824 - L1Md_F2 LINE L1 0 6582 6174 1 700 3914 32 0 0 chr11 15152032 15152496 -106691360 + L1Md_F2 LINE L1 5683 6146 -436 1 700 648 0 0 0 chr11 15152784 15152856 -106691000 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 1 700 1078 112 6 6 chr11 15152858 15153037 -106690819 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 700 5600 172 78 3 chr11 15153037 15154085 -106689771 - Lx4A LINE L1 -15 7043 5917 1 700 7422 105 30 3 chr11 15154180 15155293 -106688563 - Lx3_Mus LINE L1 0 7009 5866 1 700 694 282 22 63 chr11 15156250 15156473 -106687383 + ORR1D2 LTR MaLR 1 214 -156 1 700 207 0 0 0 chr11 15156690 15156713 -106687143 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 700 381 308 92 5 chr11 15157068 15157264 -106686592 + Tigger7 DNA MER2_type 2278 2490 -1 1 700 30 87 0 31 chr11 15157408 15157538 -106686318 + AT_rich Low_complexity Low_complexity 1 126 0 1 700 24 32 0 0 chr11 15158537 15158568 -106685288 + AT_rich Low_complexity Low_complexity 1 31 0 1 700 562 358 62 68 chr11 15158626 15158947 -106684909 - ORR1D2 LTR MaLR -40 330 12 1 700 1579 323 14 8 chr11 15158956 15159443 -106684413 - Lx6 LINE L1 -26 7434 6945 1 700 1072 244 47 0 chr11 15159465 15159744 -106684112 + L1_Mur2 LINE L1 5531 5822 -55 1 700 2264 324 41 38 chr11 15159799 15160943 -106682913 - RNERVK23-int LTR ERVK -6254 1963 816 1 700 605 286 132 4 chr11 15161239 15161467 -106682389 - RNERVK23-int LTR ERVK -7728 489 233 1 700 10367 72 26 4 chr11 15161496 15162915 -106680941 - L1Md_F2 LINE L1 -421 5462 4013 2 700 3355 58 6 0 chr11 15162911 15163414 -106680442 + L1Md_F2 LINE L1 5498 6004 -578 2 700 4354 63 2 0 chr11 15163426 15163980 -106679876 - L1Md_F3 LINE L1 -16 6568 6014 2 700 2638 54 6 6 chr11 15163980 15164306 -106679550 + RLTR10C LTR ERVK 109 436 0 2 700 1460 56 0 0 chr11 15164306 15164486 -106679370 + MMERVK10C-int LTR ERVK 1 180 -7401 2 700 233 214 0 0 chr11 15164486 15164528 -106679328 + RLTR27 LTR ERVK 231 272 -37 2 700 410 22 0 0 chr11 15164528 15164574 -106679282 + MMERVK10C-int LTR ERVK 222 267 -7314 2 700 331 189 22 22 chr11 15164656 15164748 -106679108 + A-rich Low_complexity Low_complexity 3 94 0 2 700 346 89 0 0 chr11 15164748 15164793 -106679063 + RLTR10-int LTR ERVK 93 137 -6405 2 700 1881 17 8 29 chr11 15164796 15165035 -106678821 + RLTR10-int LTR ERVK 652 885 -1102 2 700 1809 43 0 4 chr11 15165004 15165237 -106678619 + MMERVK10C-int LTR ERVK 3512 3743 -3838 2 700 8743 37 0 0 chr11 15165230 15166251 -106677605 + MMERVK10C-int LTR ERVK 4790 5810 -1771 2 700 7907 44 0 3 chr11 15166237 15167176 -106676680 + MMERVK10C-int LTR ERVK 6646 7581 0 2 700 3668 42 5 0 chr11 15167176 15167610 -106676246 + RLTR10C LTR ERVK 1 436 0 2 700 31155 86 3 8 chr11 15167630 15173023 -106670833 - L1Md_F2 LINE L1 0 5883 515 2 700 4196 87 18 3 chr11 15173025 15173699 -106670157 + L1Md_F2 LINE L1 5996 6582 0 2 700 529 228 26 100 chr11 15173894 15174084 -106669772 - RNLTR23 LTR ERVK 0 642 467 2 700 300 148 0 32 chr11 15174293 15174356 -106669500 + Lx6 LINE L1 5817 5877 -1583 2 700 1196 205 8 4 chr11 15174569 15174824 -106669032 - Lx5 LINE L1 -614 6436 6181 2 700 746 227 10 10 chr11 15174844 15175049 -106668807 - Lx5 LINE L1 -938 6112 5908 2 700 405 263 73 63 chr11 15175031 15175222 -106668634 + Lx4B LINE L1 6866 7058 0 2 700 414 0 0 0 chr11 15176130 15176176 -106667680 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 700 228 35 0 0 chr11 15176712 15176741 -106667115 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 700 7126 153 37 19 chr11 15176921 15177762 -106666094 - Lx3C LINE L1 -2 6974 6102 2 700 3167 58 5 2 chr11 15177762 15178157 -106665699 - MTA_Mm LTR MaLR 0 396 1 2 700 7126 152 55 79 chr11 15178157 15179240 -106664616 - Lx3C LINE L1 -875 6101 5056 2 700 19534 16 2 9 chr11 15179241 15182451 -106661405 + L1Md_A LINE L1 422 3605 -2278 2 700 2553 99 93 42 chr11 15182451 15182903 -106660953 - IAPLTR2_Mm LTR ERVK 0 475 1 2 700 25221 13 2 0 chr11 15182903 15185853 -106658003 - IAPEz-int LTR ERVK 0 6481 3525 2 700 968 63 0 0 chr11 15185853 15185979 -106657877 - IAPEz-int LTR ERVK -2770 4910 4785 2 700 1734 98 4 0 chr11 15185976 15186221 -106657635 - IAPEz-int LTR ERVK -5183 2497 2252 2 700 10383 37 32 68 chr11 15186222 15187719 -106656137 - IAPEz-int LTR ERVK -5004 1477 35 2 700 2579 93 95 44 chr11 15187729 15188181 -106655675 - IAPLTR2_Mm LTR ERVK 0 475 1 2 700 16627 13 1 0 chr11 15188181 15190167 -106653689 + L1Md_A LINE L1 3600 5586 -297 2 700 8782 15 1 0 chr11 15190167 15191162 -106652694 + L1Md_A LINE L1 5587 6582 0 2 700 204 125 0 0 chr11 15191188 15191220 -106652636 + (A)n Simple_repeat Simple_repeat 1 32 0 2 700 1330 260 16 5 chr11 15191254 15191622 -106652234 - Lx6 LINE L1 -709 6751 6380 2 700 599 28 0 0 chr11 15191679 15191751 -106652105 - ORR1A1 LTR MaLR 0 346 275 2 700 1954 55 73 14 chr11 15191886 15192161 -106651695 - ORR1A1 LTR MaLR -55 291 1 2 700 12731 76 28 4 chr11 15192161 15193911 -106649945 - ORR1A1-int LTR MaLR 0 1792 1 2 700 2557 59 62 0 chr11 15193914 15194238 -106649618 - ORR1A1 LTR MaLR -2 344 1 2 700 227 273 0 0 chr11 15194409 15194464 -106649392 - Lx8 LINE L1 -154 7319 7265 2 700 291 324 43 35 chr11 15195252 15195393 -106648463 + Lx7 LINE L1 6947 7088 -608 2 700 342 0 0 0 chr11 15196269 15196307 -106647549 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 2 700 191 36 0 35 chr11 15196328 15196357 -106647499 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2 700 2315 167 25 0 chr11 15198184 15198628 -106645228 - L1_Mur2 LINE L1 -1676 4201 3747 2 700 2009 163 0 0 chr11 15198627 15198996 -106644860 + Lx LINE L1 4215 4583 -1300 2 700 36789 5 0 0 chr11 15198997 15204167 -106639689 + L1Md_A LINE L1 416 5586 -297 2 87 9049 3 0 0 chr11 15204167 15205163 -106638693 + L1Md_A LINE L1 5587 6582 0 2 701 6271 173 21 23 chr11 15205168 15205251 -106638605 + Lx LINE L1 4580 4658 -1225 2 701 1144 117 22 0 chr11 15205251 15205430 -106638426 - B2_Mm1t SINE B2 -9 184 2 2 701 6354 150 19 13 chr11 15205430 15207404 -106636452 + Lx LINE L1 4659 6649 -5 2 701 225 216 10 111 chr11 15208000 15208099 -106635757 + Tigger5 DNA MER2_type 2128 2216 -190 2 701 536 335 52 69 chr11 15208850 15209431 -106634425 + L1_Rod LINE L1 5277 5847 0 2 701 958 321 50 9 chr11 15209892 15210313 -106633543 + Lx8 LINE L1 6883 7320 -153 2 701 2405 155 41 23 chr11 15210706 15211147 -106632709 + Lx2 LINE L1 6543 6991 -6 2 701 374 300 45 9 chr11 15211240 15211375 -106632481 - B3 SINE B2 -56 139 1 2 701 261 0 0 0 chr11 15211488 15211517 -106632339 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 701 1057 97 0 0 chr11 15211517 15211661 -106632195 - B1_Mus1 SINE Alu -3 145 2 2 701 4382 153 7 0 chr11 15211662 15212399 -106631457 + Lx LINE L1 5756 6497 -157 2 701 276 307 3 14 chr11 15212404 15212485 -106631371 + PB1D10 SINE Alu 34 115 -34 2 701 24 0 0 0 chr11 15212802 15212826 -106631030 + AT_rich Low_complexity Low_complexity 1 24 0 2 701 13045 76 11 5 chr11 15213563 15216025 -106627831 - L1Md_F2 LINE L1 -15 6567 4026 2 701 1188 254 21 27 chr11 15216202 15216574 -106627282 - ORR1D1 LTR MaLR -4 370 1 2 701 3778 188 119 80 chr11 15217480 15218458 -106625398 + RLTR13D2 LTR ERVK 7 1022 -1 2 701 333 0 0 0 chr11 15218458 15218495 -106625361 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 701 324 0 0 0 chr11 15218495 15218530 -106625326 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 701 1741 200 80 0 chr11 15218602 15218967 -106624889 - ORR1B1 LTR MaLR 0 394 1 2 701 1754 294 80 27 chr11 15218991 15219838 -106624018 + Lx8 LINE L1 6203 7094 -379 2 701 21 36 0 0 chr11 15220088 15220116 -106623740 + AT_rich Low_complexity Low_complexity 1 28 0 2 701 422 103 13 0 chr11 15220627 15220705 -106623151 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2 701 313 283 32 7 chr11 15220934 15221097 -106622759 + Lx7 LINE L1 5545 5745 -1951 2 701 711 153 34 0 chr11 15221101 15221340 -106622516 + (TA)n Simple_repeat Simple_repeat 1 247 0 2 701 492 302 53 6 chr11 15221537 15221707 -106622149 + RMER5 LTR ERV1 357 534 0 2 701 3685 126 18 0 chr11 15222576 15223139 -106620717 - L1_Mus3 LINE L1 -2 6636 6064 2 701 3062 102 52 0 chr11 15223139 15223787 -106620069 + L1_Mus3 LINE L1 5383 6054 -584 2 701 366 313 41 52 chr11 15223787 15223959 -106619897 + Tigger7 DNA MER2_type 2253 2422 -69 2 701 360 0 0 0 chr11 15225437 15225477 -106618379 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 701 612 38 0 0 chr11 15226291 15226370 -106617486 + (TC)n Simple_repeat Simple_repeat 2 80 0 2 701 279 54 0 0 chr11 15226370 15226406 -106617450 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 701 253 111 111 0 chr11 15226826 15226871 -106616985 - ORR1B1 LTR MaLR -336 58 9 2 701 29 0 0 0 chr11 15226887 15226916 -106616940 + AT_rich Low_complexity Low_complexity 1 29 0 2 701 1393 168 26 11 chr11 15227733 15228194 -106615662 + L1_Mur2 LINE L1 1055 1524 -4353 2 701 1434 149 68 0 chr11 15228181 15228416 -106615440 + Lx LINE L1 6109 6359 -295 2 701 690 129 0 0 chr11 15228419 15228559 -106615297 + (GA)n Simple_repeat Simple_repeat 2 141 0 2 701 1720 294 73 2 chr11 15228559 15229001 -106614855 + Lx6 LINE L1 6747 7217 -243 2 701 284 0 28 0 chr11 15229001 15229037 -106614819 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2 701 1720 294 73 2 chr11 15229037 15229102 -106614754 + Lx6 LINE L1 7218 7289 -171 2 701 784 153 84 26 chr11 15229344 15229498 -106614358 - Lx LINE L1 -136 6518 6356 2 701 519 312 81 43 chr11 15229498 15229832 -106614024 + RLTR17 LTR ERVK 337 558 -134 2 701 12527 125 27 13 chr11 15229960 15232723 -106611133 + L1VL1 LINE L1 221 3027 -671 2 701 3911 70 6 0 chr11 15232724 15233241 -106610615 + L1_Mus1 LINE L1 5832 6351 -216 2 701 401 341 44 22 chr11 15233246 15233471 -106610385 + MLT2C2 LTR ERVL 44 273 -191 2 701 508 130 0 29 chr11 15233521 15233624 -106610232 + L1_Mus3 LINE L1 6539 6638 0 2 701 770 282 128 56 chr11 15233637 15234028 -106609828 + MTD LTR MaLR 1 419 0 2 701 3150 43 127 9 chr11 15234146 15234571 -106609285 - IAPLTR2_Mm LTR ERVK 0 475 1 2 701 629 148 66 0 chr11 15235312 15235434 -106608422 - Lx2 LINE L1 -1 6996 6867 2 701 2288 174 30 0 chr11 15235442 15235849 -106608007 - Lx2 LINE L1 -435 6562 6144 2 701 1406 271 91 8 chr11 15235921 15236319 -106607537 + Lx6 LINE L1 6776 7206 -254 2 701 228 314 53 76 chr11 15238050 15238181 -106605675 + MLT1C LTR MaLR 232 359 -108 2 701 289 333 10 10 chr11 15238294 15238391 -106605465 - B1F SINE Alu -5 144 48 2 701 22 0 0 0 chr11 15238456 15238478 -106605378 + AT_rich Low_complexity Low_complexity 1 22 0 2 701 24 0 0 0 chr11 15238618 15238642 -106605214 + AT_rich Low_complexity Low_complexity 1 24 0 2 701 5891 129 28 43 chr11 15238643 15239708 -106604148 - Lx3A LINE L1 -7 6974 5926 2 701 417 116 0 0 chr11 15239756 15239825 -106604031 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 701 315 354 25 12 chr11 15239880 15240040 -106603816 - Lx7 LINE L1 -397 7299 7138 2 701 213 233 0 0 chr11 15240140 15240183 -106603673 + (TATG)n Simple_repeat Simple_repeat 1 43 0 2 701 802 329 73 40 chr11 15240236 15240686 -106603170 - Lx7 LINE L1 -982 6714 6250 2 701 220 315 14 0 chr11 15242613 15242686 -106601170 + MIRc SINE MIR 186 259 -9 2 701 207 0 0 0 chr11 15243242 15243265 -106600591 + (T)n Simple_repeat Simple_repeat 1 23 0 2 701 29 0 0 0 chr11 15243576 15243605 -106600251 + AT_rich Low_complexity Low_complexity 1 29 0 2 701 13262 172 36 53 chr11 15244891 15246694 -106597162 - Lx4A LINE L1 -1396 4481 3049 2 701 932 112 6 23 chr11 15246694 15246868 -106596988 + (TTCTCC)n Simple_repeat Simple_repeat 1 171 0 2 701 13262 161 30 60 chr11 15246868 15248390 -106595466 - Lx4A LINE L1 -2829 3048 1636 2 701 248 77 26 0 chr11 15248390 15248429 -106595427 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 701 13262 161 30 60 chr11 15248429 15248456 -106595400 - Lx4A LINE L1 -4242 1635 1608 2 701 2312 244 65 26 chr11 15248454 15248572 -106595284 + L1_Mur3 LINE L1 1903 2014 -3866 2 701 975 79 65 0 chr11 15248572 15248711 -106595145 + B1_Mus1 SINE Alu 1 148 0 2 701 2312 244 65 26 chr11 15248711 15249403 -106594453 + L1_Mur3 LINE L1 2015 2745 -3135 2 701 5126 107 27 5 chr11 15249539 15250319 -106593537 + L1_Mus4 LINE L1 5835 6631 -5 2 701 379 240 46 40 chr11 15250319 15250471 -106593385 + L1_Mur3 LINE L1 3319 3471 -2409 2 701 4292 243 105 20 chr11 15250506 15253025 -106590831 + L1_Mur3 LINE L1 103 2838 -3042 2 701 1985 220 40 22 chr11 15252997 15253503 -106590353 + L1_Mur3 LINE L1 3342 3856 -2024 2 701 3216 234 88 5 chr11 15253493 15253821 -106590035 + L1_Mur3 LINE L1 4280 4631 -1249 2 701 213 121 0 0 chr11 15253821 15253854 -106590002 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 701 3216 234 88 5 chr11 15253854 15254485 -106589371 + L1_Mur3 LINE L1 4632 5317 -563 2 701 2066 300 36 24 chr11 15254504 15255170 -106588686 + Lx7 LINE L1 6217 6890 -806 2 701 1005 86 0 7 chr11 15255217 15255357 -106588499 - B2_Mm2 SINE B2 -54 141 3 2 701 1394 303 50 44 chr11 15255357 15255923 -106587933 + Lx7 LINE L1 6893 7461 -235 2 701 280 270 17 17 chr11 15255970 15256087 -106587769 + Lx7 LINE L1 7561 7677 -19 2 701 274 60 60 0 chr11 15256168 15256208 -106587648 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 701 1026 109 0 20 chr11 15256208 15256345 -106587511 + B1_Mm SINE Alu 1 137 -10 2 701 233 0 62 0 chr11 15256345 15256377 -106587479 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 701 1026 109 0 20 chr11 15256377 15256389 -106587467 + B1_Mm SINE Alu 138 147 0 2 701 274 60 60 0 chr11 15256389 15256398 -106587458 + (CAAAA)n Simple_repeat Simple_repeat 5 13 0 2 701 5377 158 19 4 chr11 15258312 15259873 -106583983 - Lx2 LINE L1 -589 6408 4822 2 701 1697 161 4 4 chr11 15259870 15260144 -106583712 + Lx2 LINE L1 6372 6645 -352 2 701 1023 198 15 0 chr11 15260133 15260335 -106583521 + Lx2 LINE L1 6765 6969 -28 2 701 927 174 11 6 chr11 15260336 15260515 -106583341 - B2_Mm1t SINE B2 -13 180 1 3 701 5799 111 25 0 chr11 15260515 15262168 -106581688 + L1VL2 LINE L1 128 1826 -1789 3 701 297 325 0 0 chr11 15262324 15262401 -106581455 - PB1D10 SINE Alu -14 103 27 3 701 25 51 0 0 chr11 15262821 15262860 -106580996 + AT_rich Low_complexity Low_complexity 1 39 0 3 701 36 0 0 0 chr11 15263000 15263036 -106580820 + AT_rich Low_complexity Low_complexity 1 36 0 3 701 255 204 81 0 chr11 15263154 15263240 -106580616 + L1M2 LINE L1 2745 2836 -3304 3 701 1508 75 26 9 chr11 15263272 15263501 -106580355 + L1_Mus3 LINE L1 6405 6637 -1 3 701 225 0 0 0 chr11 15263567 15263592 -106580264 + (A)n Simple_repeat Simple_repeat 1 25 0 3 701 219 167 0 0 chr11 15263679 15263721 -106580135 + A-rich Low_complexity Low_complexity 1 42 0 3 701 22 56 0 0 chr11 15264547 15264583 -106579273 + AT_rich Low_complexity Low_complexity 1 36 0 3 701 480 86 0 0 chr11 15264809 15264879 -106578977 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 701 22 56 0 0 chr11 15265770 15265806 -106578050 + AT_rich Low_complexity Low_complexity 1 36 0 3 701 318 67 0 0 chr11 15265865 15265910 -106577946 + (ATG)n Simple_repeat Simple_repeat 2 46 0 3 701 365 355 8 68 chr11 15265940 15266073 -106577783 - RSINE1 SINE B4 -13 152 28 3 701 29 0 0 0 chr11 15266650 15266679 -106577177 + AT_rich Low_complexity Low_complexity 1 29 0 3 701 22 70 0 0 chr11 15267113 15267156 -106576700 + AT_rich Low_complexity Low_complexity 1 43 0 3 701 674 172 0 13 chr11 15267565 15267718 -106576138 + (CAGAGA)n Simple_repeat Simple_repeat 4 154 0 3 701 270 0 0 0 chr11 15269441 15269471 -106574385 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 701 223 195 52 0 chr11 15269699 15269776 -106574080 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 701 21 0 0 0 chr11 15270437 15270458 -106573398 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 611 84 0 10 chr11 15271374 15271470 -106572386 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 701 1262 291 101 19 chr11 15272856 15273340 -106570516 - Lx7 LINE L1 -736 6960 6437 3 701 23 33 0 0 chr11 15274670 15274700 -106569156 + AT_rich Low_complexity Low_complexity 1 30 0 3 701 2647 25 85 0 chr11 15274703 15275022 -106568834 + ORR1A0 LTR MaLR 1 346 0 3 701 13376 63 11 11 chr11 15275022 15276813 -106567043 + ORR1A0-int LTR MaLR 1 1792 0 3 701 2777 26 12 0 chr11 15276813 15277155 -106566701 + ORR1A0 LTR MaLR 1 346 0 3 701 430 317 53 18 chr11 15279295 15279465 -106564391 + MT2A LTR ERVL 1 176 -357 3 701 8103 222 111 33 chr11 15279465 15280702 -106563154 + L1_Mus3 LINE L1 2748 3983 -1903 3 701 321 89 0 0 chr11 15280702 15280747 -106563109 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 701 8103 178 87 21 chr11 15280747 15282941 -106560915 + L1_Mus3 LINE L1 3984 6417 -221 3 701 2808 100 18 51 chr11 15282931 15283382 -106560474 + L1_Mus2 LINE L1 6131 6566 0 3 701 225 43 42 42 chr11 15284170 15284218 -106559638 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 3 701 459 52 0 0 chr11 15284381 15284439 -106559417 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 701 2734 95 5 5 chr11 15284736 15285129 -106558727 - L1Md_F2 LINE L1 0 6582 6190 3 701 202 298 88 0 chr11 15285183 15285240 -106558616 + MIRb SINE MIR 207 268 0 3 701 759 107 83 28 chr11 15285482 15285577 -106558279 + Lx3_Mus LINE L1 5809 5905 -1104 3 701 270 0 0 0 chr11 15285577 15285607 -106558249 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 701 759 188 109 31 chr11 15285607 15285758 -106558098 + Lx3_Mus LINE L1 5906 6077 -904 3 701 6136 116 11 22 chr11 15287583 15288580 -106555276 - Lx3_Mus LINE L1 -8 7001 6016 3 701 279 79 0 0 chr11 15289742 15289780 -106554076 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 701 180 0 0 0 chr11 15291452 15291472 -106552384 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3 701 375 352 20 10 chr11 15291712 15291907 -106551949 + Lx9 LINE L1 7138 7334 -310 3 701 622 256 119 140 chr11 15291959 15292342 -106551514 - MT2A LTR ERVL -91 510 13 3 701 1645 184 54 3 chr11 15292347 15292680 -106551176 + Lx2A1 LINE L1 6653 7002 -6 3 701 376 318 15 37 chr11 15293038 15293172 -106550684 - B3A SINE B2 -67 131 1 3 701 636 236 0 0 chr11 15294521 15294699 -106549157 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 701 319 203 8 15 chr11 15294668 15294798 -106549058 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 3 701 218 122 0 24 chr11 15295224 15295266 -106548590 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 3 701 627 52 21 10 chr11 15295869 15295966 -106547890 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 3 701 22 56 0 0 chr11 15296023 15296059 -106547797 + AT_rich Low_complexity Low_complexity 1 36 0 3 701 1924 96 76 0 chr11 15297643 15297944 -106545912 - IAPEY2_LTR LTR ERVK 0 357 34 3 701 214 147 0 0 chr11 15298460 15298494 -106545362 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 701 390 175 0 0 chr11 15298957 15299037 -106544819 + T-rich Low_complexity Low_complexity 1 80 0 3 701 2635 50 0 0 chr11 15299061 15299384 -106544472 - L1_Mus1 LINE L1 -5 6562 6240 3 701 1182 79 0 6 chr11 15299383 15299548 -106544308 - L1_Mus2 LINE L1 0 6566 6403 3 701 977 271 104 31 chr11 15300610 15300899 -106542957 - MTD LTR MaLR -104 315 6 3 701 26 93 0 0 chr11 15301267 15301342 -106542514 + AT_rich Low_complexity Low_complexity 1 75 0 3 701 2175 69 19 13 chr11 15304067 15304374 -106539482 + L1_Mus3 LINE L1 6323 6631 -7 3 701 251 242 89 24 chr11 15305828 15305997 -106537859 - Lx9 LINE L1 -7 7637 7458 3 701 225 154 19 19 chr11 15305998 15306051 -106537805 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 701 434 221 0 0 chr11 15306095 15306181 -106537675 - Lx9 LINE L1 -176 7468 7383 3 701 227 302 57 0 chr11 15306663 15306769 -106537087 + Lx9 LINE L1 7527 7638 -6 3 701 22 35 0 0 chr11 15306922 15306951 -106536905 + AT_rich Low_complexity Low_complexity 1 29 0 3 701 330 181 40 40 chr11 15308142 15308217 -106535639 - Lx2B LINE L1 -483 6517 6443 3 701 435 95 0 0 chr11 15308418 15308492 -106535364 + (TC)n Simple_repeat Simple_repeat 2 75 0 3 701 1979 163 2 80 chr11 15308549 15308937 -106534919 - L1VL4 LINE L1 -2473 1439 1093 3 701 5137 165 13 32 chr11 15308937 15309918 -106533938 - Lx3B LINE L1 -5 6968 6006 3 701 1979 220 25 62 chr11 15309918 15310322 -106533534 - L1VL4 LINE L1 -5890 1092 671 3 701 31 0 0 24 chr11 15310798 15310818 -106533038 + AT_rich Low_complexity Low_complexity 1 20 0 3 701 444 117 0 0 chr11 15310818 15310895 -106532961 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 701 31 0 0 24 chr11 15310895 15310916 -106532940 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 6509 56 4 7 chr11 15310988 15311799 -106532057 - RLTR13C2 LTR ERVK 0 808 1 3 701 850 75 0 0 chr11 15312302 15312409 -106531447 + U6 snRNA snRNA 1 107 0 3 701 379 243 38 50 chr11 15312621 15312762 -106531094 - Lx5 LINE L1 -598 6452 6330 3 701 4607 206 74 15 chr11 15312878 15313916 -106529940 + RLTR25A LTR ERVK 5 1103 0 3 701 33 56 0 0 chr11 15314739 15314793 -106529063 + AT_rich Low_complexity Low_complexity 1 54 0 3 701 228 235 0 0 chr11 15315537 15315605 -106528251 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 3 701 796 76 168 0 chr11 15315699 15315818 -106528038 - B1_Mm SINE Alu -8 139 1 3 701 302 323 57 34 chr11 15315998 15316264 -106527592 + RMER15 LTR ERVL 276 574 -1 3 701 1142 352 33 75 chr11 15316670 15317545 -106526311 + RMER15-int LTR ERVL 1236 2073 -2926 3 701 281 246 52 99 chr11 15317552 15317764 -106526092 - MER63D DNA AcHobo -132 929 728 3 701 406 350 16 16 chr11 15318137 15318323 -106525533 + Lx8 LINE L1 6192 6377 -1096 3 701 400 323 79 6 chr11 15318454 15318619 -106525237 + RMER15-int LTR ERVL 4465 4641 -358 3 701 214 180 50 0 chr11 15318632 15318732 -106525124 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 701 243 356 46 8 chr11 15318798 15318928 -106524928 + MIRc SINE MIR 24 158 -110 3 701 791 75 8 0 chr11 15319106 15319226 -106524630 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 701 796 128 13 0 chr11 15319393 15319542 -106524314 + Lx2 LINE L1 6845 6995 -2 3 701 27 49 0 0 chr11 15319546 15319587 -106524269 + AT_rich Low_complexity Low_complexity 1 41 0 3 701 3145 39 39 0 chr11 15320544 15320925 -106522931 + MTA_Mm LTR MaLR 1 396 0 3 701 1175 54 7 0 chr11 15321870 15322017 -106521839 - B1_Mus1 SINE Alu 0 148 1 3 701 291 165 29 67 chr11 15322353 15322457 -106521399 + A-rich Low_complexity Low_complexity 1 100 0 3 701 342 0 0 0 chr11 15322755 15322793 -106521063 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 701 5179 95 36 11 chr11 15322804 15323562 -106520294 + Lx3_Mus LINE L1 6233 7009 0 3 701 32 0 0 0 chr11 15323597 15323629 -106520227 + AT_rich Low_complexity Low_complexity 1 32 0 3 701 214 131 21 21 chr11 15324038 15324085 -106519771 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 3 701 428 319 106 90 chr11 15324283 15324659 -106519197 + RMER5 LTR ERV1 112 493 -41 3 701 1983 158 23 28 chr11 15325003 15325420 -106518436 - Lx3C LINE L1 -698 6311 5898 3 701 2467 59 6 6 chr11 15325430 15325756 -106518100 + IAPEY2_LTR LTR ERVK 32 357 0 3 701 2403 158 0 0 chr11 15325776 15326163 -106517693 - Lx3C LINE L1 0 5886 5500 3 701 3683 162 46 3 chr11 15326163 15326814 -106517042 + Lx3C LINE L1 6296 6974 -2 3 701 282 331 64 0 chr11 15326920 15327077 -106516779 - Lx9 LINE L1 -281 7363 7197 3 701 1109 196 42 5 chr11 15327087 15327302 -106516554 - URR1B DNA MER1_type -1 224 2 3 701 1070 337 50 35 chr11 15327350 15327956 -106515900 - Lx9 LINE L1 -487 7157 6543 3 701 476 149 11 0 chr11 15328347 15328441 -106515415 + (CA)n Simple_repeat Simple_repeat 2 96 0 3 701 264 299 31 0 chr11 15328506 15328603 -106515253 - Lx9 LINE L1 -219 7425 7326 3 701 581 278 135 38 chr11 15328663 15328981 -106514875 - Lx9 LINE L1 -429 7215 6867 3 701 430 103 26 0 chr11 15329037 15329115 -106514741 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 701 200 246 14 0 chr11 15329248 15329317 -106514539 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 3 701 894 181 0 0 chr11 15329312 15329523 -106514333 + (CA)n Simple_repeat Simple_repeat 1 211 0 3 701 1158 122 0 0 chr11 15329523 15329871 -106513985 + (TA)n Simple_repeat Simple_repeat 1 348 0 3 701 345 156 0 0 chr11 15329884 15329961 -106513895 + GA-rich Low_complexity Low_complexity 2 78 0 3 701 33 94 0 0 chr11 15330210 15330306 -106513550 + AT_rich Low_complexity Low_complexity 1 96 0 4 701 5872 155 52 3 chr11 15330364 15331368 -106512488 - Lx LINE L1 -5 6649 5597 4 701 26 30 0 0 chr11 15332427 15332460 -106511396 + AT_rich Low_complexity Low_complexity 1 33 0 4 701 1209 119 47 0 chr11 15332460 15332653 -106511203 - L1_Mus3 LINE L1 -12 6626 6425 4 701 398 258 115 68 chr11 15333579 15333770 -106510086 - MER31A LTR ERV1 -152 333 134 4 701 264 30 0 0 chr11 15333773 15333806 -106510050 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 4 701 21 0 0 0 chr11 15334342 15334363 -106509493 + AT_rich Low_complexity Low_complexity 1 21 0 4 701 970 96 0 15 chr11 15334565 15334577 -106509279 - B1_Mm SINE Alu -1 146 135 4 701 4363 71 2 12 chr11 15334577 15335151 -106508705 - L1_Mus1 LINE L1 0 6567 6000 4 701 970 96 0 15 chr11 15335151 15335275 -106508581 - B1_Mm SINE Alu -13 134 12 4 87 3405 199 53 3 chr11 15335409 15336068 -106507788 - RLTR17 LTR ERVK 0 692 1 4 702 1169 219 136 7 chr11 15337184 15337517 -106506339 - ORR1B2 LTR MaLR -19 375 1 4 702 21 0 0 0 chr11 15337776 15337797 -106506059 + AT_rich Low_complexity Low_complexity 1 21 0 4 702 786 280 71 84 chr11 15338055 15338449 -106505407 + RMER10B LTR ERVL 10 398 0 4 702 28 29 0 0 chr11 15339307 15339342 -106504514 + AT_rich Low_complexity Low_complexity 1 35 0 4 702 222 174 0 0 chr11 15339424 15339470 -106504386 + T-rich Low_complexity Low_complexity 1 46 0 4 702 38 51 0 0 chr11 15340025 15340084 -106503772 + AT_rich Low_complexity Low_complexity 1 59 0 4 702 25 75 0 0 chr11 15340223 15340276 -106503580 + AT_rich Low_complexity Low_complexity 1 53 0 4 702 590 39 0 13 chr11 15340517 15340595 -106503261 + (CATA)n Simple_repeat Simple_repeat 2 78 0 4 702 2563 81 3 11 chr11 15340853 15341201 -106502655 - L1_Mus1 LINE L1 -33 6534 6190 4 702 195 42 0 0 chr11 15341934 15341958 -106501898 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 4 702 325 325 94 72 chr11 15342024 15342289 -106501567 - MLT1A0 LTR MaLR -17 348 78 4 702 21 0 0 0 chr11 15343161 15343182 -106500674 + AT_rich Low_complexity Low_complexity 1 21 0 4 702 1382 109 0 83 chr11 15343182 15343423 -106500433 - L1_Mus2 LINE L1 -1 6565 6345 4 702 916 258 33 49 chr11 15343597 15343842 -106500014 + Lx6 LINE L1 7202 7442 -18 4 702 3644 131 26 8 chr11 15343878 15344488 -106499368 - L1_Mus2 LINE L1 -376 5507 4887 4 702 5215 119 71 61 chr11 15344478 15345517 -106498339 + L1_Mus2 LINE L1 5516 6565 -1 4 702 759 343 47 12 chr11 15345581 15345923 -106497933 - Lx6 LINE L1 -54 7406 7053 4 702 186 150 0 0 chr11 15345966 15346006 -106497850 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 4 702 323 367 79 33 chr11 15347935 15348149 -106495707 - B4 SINE B4 -66 226 3 4 702 7957 50 2 2 chr11 15348164 15349152 -106494704 - L1Md_F2 LINE L1 -2 6580 5593 4 702 223 182 23 0 chr11 15349479 15349523 -106494333 + GA-rich Low_complexity Low_complexity 2 46 0 4 702 224 297 78 92 chr11 15350662 15350803 -106493053 - B4A SINE B4 -153 139 1 4 702 288 332 17 50 chr11 15350805 15351043 -106492813 - L1M3d LINE L1 -4577 1314 1085 4 702 204 311 0 0 chr11 15351049 15351200 -106492656 + (CA)n Simple_repeat Simple_repeat 2 152 0 4 702 533 303 6 0 chr11 15351232 15351410 -106492446 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 702 1214 271 68 65 chr11 15351493 15352136 -106491720 - Lx7 LINE L1 -1269 6427 5783 4 702 1093 278 3 28 chr11 15352133 15352422 -106491434 - Lx6 LINE L1 0 7460 7179 4 702 1352 280 96 39 chr11 15352999 15354381 -106489475 + RMER1A Other Other 1 1053 -13 4 702 814 150 0 32 chr11 15354384 15354534 -106489322 + GA-rich Low_complexity Low_complexity 1 146 0 4 702 1121 79 11 17 chr11 15354534 15354715 -106489141 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 702 814 153 4 22 chr11 15354715 15354766 -106489090 + polypurine Low_complexity Low_complexity 1 50 0 4 702 1126 100 0 11 chr11 15354766 15354948 -106488908 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 702 661 156 7 15 chr11 15354948 15355038 -106488818 + polypurine Low_complexity Low_complexity 49 137 0 4 702 238 250 41 14 chr11 15355038 15355111 -106488745 - Lx7 LINE L1 -213 7483 7409 4 702 1385 183 121 0 chr11 15355116 15355406 -106488450 + ORR1A3 LTR MaLR 3 327 0 4 702 384 105 0 0 chr11 15355406 15355463 -106488393 + ORR1A3-int LTR MaLR 1 57 -1735 4 702 247 133 0 0 chr11 15355462 15355507 -106488349 + ORR1A3-int LTR MaLR 1238 1282 -681 4 702 2017 142 15 6 chr11 15355501 15355835 -106488021 + ORR1A3-int LTR MaLR 1627 1963 0 4 702 1786 164 3 58 chr11 15355835 15356178 -106487678 + ORR1A3 LTR MaLR 1 324 -2 4 702 393 348 0 0 chr11 15356179 15356297 -106487559 - Lx6 LINE L1 -313 7147 7030 4 702 1814 167 32 9 chr11 15356300 15356599 -106487257 - RLTR15 LTR ERVK -2 357 59 4 702 189 0 0 0 chr11 15356599 15356620 -106487236 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 702 1814 167 32 9 chr11 15356620 15356664 -106487192 - RLTR15 LTR ERVK -301 58 7 4 702 918 257 87 5 chr11 15356669 15356888 -106486968 - Lx6 LINE L1 -452 7008 6772 4 702 7535 232 51 26 chr11 15356889 15357107 -106486749 - L1_Mur3 LINE L1 -105 5775 5568 4 702 183 80 0 0 chr11 15357107 15357132 -106486724 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 4 702 7535 232 51 26 chr11 15357132 15359250 -106484606 - L1_Mur3 LINE L1 -313 5567 3382 4 702 3070 233 32 19 chr11 15359860 15361049 -106482807 + L1_Mur2 LINE L1 847 2055 -3822 4 702 243 0 0 0 chr11 15361049 15361076 -106482780 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 702 3070 235 26 24 chr11 15361076 15361133 -106482723 + L1_Mur2 LINE L1 2056 2108 -3769 4 702 681 217 99 0 chr11 15361160 15361381 -106482475 - L1_Mur3 LINE L1 -3681 2199 1957 4 702 6894 120 20 3 chr11 15361384 15362551 -106481305 + L1_Mus3 LINE L1 5453 6637 -1 4 702 2370 220 27 16 chr11 15362556 15363541 -106480315 - L1_Mur3 LINE L1 -3921 1956 931 4 702 655 281 0 10 chr11 15363539 15363744 -106480112 - L1_Mur3 LINE L1 -6743 985 783 4 702 9686 102 8 12 chr11 15364402 15366760 -106477096 + Lx3_Mus LINE L1 4670 7009 0 4 702 24 0 0 0 chr11 15367067 15367091 -106476765 + AT_rich Low_complexity Low_complexity 1 24 0 4 702 2528 182 36 9 chr11 15367284 15367997 -106475859 - Lx2B LINE L1 -992 6008 5270 4 702 5076 177 42 4 chr11 15367997 15368937 -106474919 + Lx2B LINE L1 6021 6995 -5 4 702 709 263 93 21 chr11 15369348 15369542 -106474314 - B3 SINE B2 -5 211 4 4 702 376 338 18 64 chr11 15369671 15369842 -106474014 + RSINE1 SINE B4 3 165 0 4 702 291 329 83 30 chr11 15370038 15370207 -106473649 + MLT1A0 LTR MaLR 72 249 -116 4 702 322 339 108 32 chr11 15370661 15370975 -106472881 - MER67B LTR ERV1 -221 440 103 4 702 1218 34 0 0 chr11 15371733 15371880 -106471976 + B1_Mus2 SINE Alu 1 147 0 4 702 207 0 0 0 chr11 15371880 15371903 -106471953 + (A)n Simple_repeat Simple_repeat 1 23 0 4 702 246 128 0 0 chr11 15372647 15372686 -106471170 + (A)n Simple_repeat Simple_repeat 1 39 0 4 702 21823 172 21 47 chr11 15372692 15375031 -106468825 + L1VL4 LINE L1 698 2970 -2916 4 702 954 147 79 0 chr11 15375031 15375208 -106468648 + B2_Mm2 SINE B2 2 192 -3 4 702 21823 186 18 17 chr11 15375208 15378076 -106465780 + L1VL4 LINE L1 2971 5815 -71 4 702 2612 167 4 4 chr11 15378073 15378547 -106465309 - L1_Mm LINE L1 -891 4992 4519 4 702 6045 148 16 16 chr11 15378546 15379805 -106464051 + Lx LINE L1 5397 6654 0 4 702 542 294 34 39 chr11 15380042 15380247 -106463609 + B3 SINE B2 6 209 -7 4 702 23 0 0 0 chr11 15380408 15380431 -106463425 + AT_rich Low_complexity Low_complexity 1 23 0 4 702 726 192 0 0 chr11 15380869 15381015 -106462841 + (CATA)n Simple_repeat Simple_repeat 2 147 0 4 702 283 98 58 19 chr11 15381018 15381070 -106462786 - B2_Mm2 SINE B2 -24 171 118 4 702 1314 131 39 0 chr11 15381070 15381288 -106462568 + L1_Mus3 LINE L1 6399 6625 -13 4 702 189 0 0 0 chr11 15381288 15381309 -106462547 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 702 25 0 0 0 chr11 15381331 15381356 -106462500 + AT_rich Low_complexity Low_complexity 1 25 0 4 702 220 280 0 0 chr11 15381356 15381406 -106462450 - B2_Mm2 SINE B2 -143 52 3 4 702 353 328 25 25 chr11 15381900 15382019 -106461837 - B3A SINE B2 -75 123 5 4 702 201 154 0 0 chr11 15382054 15382093 -106461763 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 702 23 0 0 0 chr11 15383313 15383336 -106460520 + AT_rich Low_complexity Low_complexity 1 23 0 4 702 461 177 0 0 chr11 15383353 15383432 -106460424 - B1_Mur4 SINE Alu 0 150 72 4 702 8147 150 16 11 chr11 15383454 15384929 -106458927 - Lx3B LINE L1 -3 6970 5481 4 702 2861 47 6 0 chr11 15384929 15385273 -106458583 + ORR1A0 LTR MaLR 1 346 0 4 702 13726 56 6 12 chr11 15385273 15387077 -106456779 + ORR1A0-int LTR MaLR 1 1792 0 4 702 2920 46 0 0 chr11 15387077 15387423 -106456433 + ORR1A0 LTR MaLR 1 346 0 4 702 2720 128 9 27 chr11 15387423 15387450 -106456406 - Lx3B LINE L1 -406 5480 5456 4 702 234 0 0 0 chr11 15387450 15387476 -106456380 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 702 360 200 69 24 chr11 15387497 15387621 -106456235 + L1MA4A LINE L1 5808 5929 -371 4 702 236 286 0 0 chr11 15387625 15387681 -106456175 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 4 702 3741 66 6 0 chr11 15387931 15388415 -106455441 - L1Md_F2 LINE L1 0 6582 6096 4 702 34 24 0 0 chr11 15389683 15389724 -106454132 + AT_rich Low_complexity Low_complexity 1 41 0 4 702 531 309 84 38 chr11 15390061 15390407 -106453449 - ORR1D2 LTR MaLR -4 366 5 4 702 21 36 0 0 chr11 15390885 15390913 -106452943 + AT_rich Low_complexity Low_complexity 1 28 0 4 702 219 286 38 38 chr11 15392062 15392142 -106451714 - B1_Mur3 SINE Alu -63 86 7 4 702 1251 352 62 42 chr11 15392769 15393629 -106450227 - MTE-int LTR MaLR -677 903 27 4 702 21 36 0 0 chr11 15393845 15393873 -106449983 + AT_rich Low_complexity Low_complexity 1 28 0 4 702 184 377 46 40 chr11 15395174 15395326 -106448530 - L3b LINE CR1 -259 223 71 4 702 386 39 19 0 chr11 15395845 15395897 -106447959 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 702 21 36 0 0 chr11 15396480 15396508 -106447348 + AT_rich Low_complexity Low_complexity 1 28 0 4 702 21 36 0 0 chr11 15397309 15397337 -106446519 + AT_rich Low_complexity Low_complexity 1 28 0 4 702 812 55 9 0 chr11 15398388 15398498 -106445358 + (TCC)n Simple_repeat Simple_repeat 1 111 0 4 702 445 192 0 16 chr11 15398550 15398672 -106445184 + CT-rich Low_complexity Low_complexity 3 122 0 4 702 440 252 0 6 chr11 15398728 15398884 -106444972 + CT-rich Low_complexity Low_complexity 3 157 0 4 702 20803 180 20 76 chr11 15399163 15403268 -106440588 + L1_Mus4 LINE L1 609 4337 -1546 4 702 7942 45 1 5 chr11 15403268 15404255 -106439601 + L1Md_F3 LINE L1 5587 6569 -15 4 702 20803 153 24 48 chr11 15404255 15406478 -106437378 + L1_Mus4 LINE L1 4338 6625 -11 4 702 249 128 0 0 chr11 15406600 15406647 -106437209 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 702 1383 316 87 42 chr11 15406715 15407494 -106436362 - Lx8 LINE L1 -587 6886 6073 4 702 21 36 0 0 chr11 15407538 15407566 -106436290 + AT_rich Low_complexity Low_complexity 1 28 0 4 702 208 188 15 45 chr11 15407831 15407878 -106435978 + T-rich Low_complexity Low_complexity 25 70 0 4 702 373 326 7 33 chr11 15407878 15408030 -106435826 - B1_Mur1 SINE Alu -1 148 1 5 702 208 188 15 45 chr11 15408030 15408049 -106435807 + T-rich Low_complexity Low_complexity 6 24 0 5 702 492 307 0 50 chr11 15408049 15408210 -106435646 - B3 SINE B2 -4 212 60 5 702 429 327 77 64 chr11 15408237 15408704 -106435152 + L1MD1 LINE L1 4856 5328 -818 5 702 561 302 127 28 chr11 15409342 15409908 -106433948 + L1MD1 LINE L1 5600 6221 -21 5 702 21 0 0 0 chr11 15410740 15410761 -106433095 + AT_rich Low_complexity Low_complexity 1 21 0 5 702 671 352 42 15 chr11 15410763 15411028 -106432828 + B4A SINE B4 11 282 -10 5 702 308 317 8 54 chr11 15411174 15411304 -106432552 - L1MDa LINE L1 -1542 4995 4872 5 702 1253 161 18 0 chr11 15411314 15411537 -106432319 + Lx LINE L1 6428 6654 0 5 702 399 177 13 0 chr11 15411537 15411616 -106432240 + Lx5 LINE L1 5282 5361 -516 5 702 455 176 0 0 chr11 15411621 15411695 -106432161 + B2_Mm2 SINE B2 6 79 -116 5 702 923 124 15 0 chr11 15411715 15411852 -106432004 + B1_Mus1 SINE Alu 1 139 -9 5 702 887 202 33 0 chr11 15411879 15412073 -106431783 + Lx5 LINE L1 5350 5584 -760 5 702 226 150 0 0 chr11 15412081 15412121 -106431735 - L1_Mur2 LINE L1 -305 5572 5533 5 702 4033 148 11 7 chr11 15412122 15412817 -106431039 + Lx2 LINE L1 6291 6988 -9 5 702 268 159 0 0 chr11 15412838 15412882 -106430974 + Lx5 LINE L1 5585 5628 -252 5 702 1029 288 37 24 chr11 15412899 15413294 -106430562 + Lx5 LINE L1 5984 6406 -644 5 702 723 311 23 5 chr11 15413291 15413511 -106430345 + Lx5 LINE L1 6822 7045 -5 5 702 1390 251 39 24 chr11 15413879 15414292 -106429564 + MTD LTR MaLR 1 419 0 5 702 383 289 125 21 chr11 15414299 15414539 -106429317 - L1MDa LINE L1 -3513 3024 2760 5 702 30 45 0 0 chr11 15414821 15414865 -106428991 + AT_rich Low_complexity Low_complexity 1 44 0 5 702 203 132 0 36 chr11 15414891 15414946 -106428910 + T-rich Low_complexity Low_complexity 4 56 0 5 702 1083 101 0 0 chr11 15414959 15415098 -106428758 - B1_Mus1 SINE Alu -9 139 1 5 702 571 368 76 12 chr11 15415450 15415950 -106427906 - L1MDa LINE L1 -4510 2123 1592 5 702 615 102 19 0 chr11 15416187 15416295 -106427561 - Lx LINE L1 -3 7005 6896 5 702 3070 174 18 102 chr11 15416341 15417102 -106426754 - RMER17A2 LTR ERVK -1 905 209 5 702 381 68 33 17 chr11 15417103 15417163 -106426693 - RMER17A2 LTR ERVK -845 61 1 5 702 441 0 0 0 chr11 15417281 15417330 -106426526 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 702 1866 111 39 60 chr11 15417334 15417670 -106426186 - Lx LINE L1 -2 6652 6324 5 702 2786 277 55 38 chr11 15417676 15418666 -106425190 + Lx9 LINE L1 6354 7359 -285 5 702 1073 201 62 24 chr11 15418730 15419020 -106424836 + Lx9 LINE L1 7343 7643 -1 5 702 21 36 0 0 chr11 15419038 15419066 -106424790 + AT_rich Low_complexity Low_complexity 1 28 0 5 702 4299 265 40 51 chr11 15419243 15419420 -106424436 + Lx6 LINE L1 5975 6147 -1313 5 702 2098 103 49 40 chr11 15419420 15419744 -106424112 - ORR1A2 LTR MaLR 0 327 1 5 702 4299 265 40 51 chr11 15419744 15420784 -106423072 + Lx6 LINE L1 6148 7179 -281 5 702 768 115 0 0 chr11 15420801 15420923 -106422933 + (GGAA)n Simple_repeat Simple_repeat 4 125 0 5 702 491 340 83 75 chr11 15420924 15421286 -106422570 - MT2A LTR ERVL -85 448 84 5 702 6151 216 57 18 chr11 15421302 15422808 -106421048 + Lx5 LINE L1 5503 7050 0 5 702 204 40 0 0 chr11 15422808 15422833 -106421023 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 702 1083 77 0 7 chr11 15422888 15423032 -106420824 + B1_Mm SINE Alu 2 144 -3 5 702 270 0 0 0 chr11 15423032 15423062 -106420794 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 5 702 374 194 93 41 chr11 15423063 15423160 -106420696 - MT2A LTR ERVL -405 128 27 5 702 798 35 43 0 chr11 15423888 15424004 -106419852 + (TCTCCC)n Simple_repeat Simple_repeat 6 126 0 5 702 259 383 0 73 chr11 15424949 15424970 -106418886 - PB1D10 SINE Alu -2 115 103 5 702 426 88 0 0 chr11 15424970 15425038 -106418818 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 702 259 383 0 73 chr11 15425038 15425140 -106418716 - PB1D10 SINE Alu -15 102 1 5 702 270 381 0 0 chr11 15425045 15425142 -106418714 - ID_B1 SINE B4 -48 176 80 5 702 1202 207 60 8 chr11 15426049 15426283 -106417573 + Lx4A LINE L1 6812 7057 -1 5 702 26 0 0 0 chr11 15426396 15426422 -106417434 + AT_rich Low_complexity Low_complexity 1 26 0 5 702 3399 62 0 0 chr11 15426854 15427277 -106416579 + L1_Mus1 LINE L1 6144 6566 -1 5 702 22 0 0 0 chr11 15427640 15427662 -106416194 + AT_rich Low_complexity Low_complexity 1 22 0 5 702 228 271 147 18 chr11 15428281 15428390 -106415466 - Charlie2b DNA MER1_type -697 2085 1963 5 702 26 30 0 0 chr11 15428939 15428972 -106414884 + AT_rich Low_complexity Low_complexity 1 33 0 5 702 27 0 0 0 chr11 15429001 15429028 -106414828 + AT_rich Low_complexity Low_complexity 1 27 0 5 702 207 0 0 0 chr11 15429289 15429312 -106414544 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 702 273 362 110 0 chr11 15429499 15429626 -106414230 + MTD LTR MaLR 42 182 -239 5 702 380 261 201 75 chr11 15429657 15429831 -106414025 + MTD LTR MaLR 224 419 0 5 702 21 0 0 0 chr11 15430063 15430084 -106413772 + AT_rich Low_complexity Low_complexity 1 21 0 5 702 375 73 0 0 chr11 15430694 15430749 -106413107 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 702 2981 57 0 3 chr11 15430893 15431262 -106412594 - L1_Mus1 LINE L1 -1 6566 6199 5 702 232 49 15 90 chr11 15431308 15431375 -106412481 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 5 702 958 145 7 0 chr11 15431383 15431528 -106412328 - B1_Mus1 SINE Alu 0 148 3 5 702 219 161 17 35 chr11 15431783 15431841 -106412015 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 702 776 330 45 58 chr11 15432127 15432509 -106411347 + MTEa LTR MaLR 3 379 0 5 702 310 264 30 66 chr11 15432548 15432714 -106411142 + L1MEb LINE L1 522 681 -5455 5 702 240 392 90 4 chr11 15433207 15433440 -106410416 + MLT2B1 LTR ERVL 1 253 -267 5 702 2936 100 44 15 chr11 15433616 15434072 -106409784 + Lx3_Mus LINE L1 6540 7008 -1 5 702 6185 166 27 15 chr11 15434603 15435767 -106408089 - Lx2 LINE L1 0 6997 5820 5 702 584 179 67 0 chr11 15435772 15435906 -106407950 - L1_Mur2 LINE L1 -2108 3769 3627 5 702 435 320 70 42 chr11 15435906 15436262 -106407594 + L1MEb LINE L1 2869 3234 -2912 5 702 333 401 40 7 chr11 15436783 15436931 -106406925 + RSINE1 SINE B4 5 157 -8 5 702 228 86 0 0 chr11 15437292 15437327 -106406529 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 702 4734 245 78 43 chr11 15438622 15441136 -106402720 - Lx7 LINE L1 -663 7033 4444 5 702 356 292 91 24 chr11 15441580 15441745 -106402111 - Charlie1a DNA MER1_type -682 773 598 5 702 2106 47 88 0 chr11 15441792 15442066 -106401790 - L1_Mus1 LINE L1 0 6567 6270 5 702 1093 72 0 0 chr11 15442066 15442205 -106401651 + B1_Mus1 SINE Alu 1 139 -9 5 702 457 30 0 29 chr11 15442205 15442274 -106401582 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 5 702 489 271 14 14 chr11 15442294 15442440 -106401416 - Lx7 LINE L1 -1445 4435 4290 5 702 1920 318 135 22 chr11 15442487 15443624 -106400232 - Lx8 LINE L1 -2 7471 6207 5 702 619 287 19 52 chr11 15443707 15443975 -106399881 + RMER3D-int LTR ERVK 1120 1378 -1464 5 702 2319 209 85 49 chr11 15443984 15444438 -106399418 + MYSERV16_I-int LTR ERVK 277 775 -1551 5 702 2493 78 141 0 chr11 15444438 15444808 -106399048 - BGLII_Mus LTR ERVK 0 422 1 5 702 2319 209 85 49 chr11 15444808 15444987 -106398869 + MYSERV16_I-int LTR ERVK 776 933 -1393 5 702 785 135 6 29 chr11 15444984 15445159 -106398697 + MYSERV16_I-int LTR ERVK 1062 1232 -1094 5 702 271 312 0 9 chr11 15445253 15445363 -106398493 - L1_Mur3 LINE L1 -1061 4819 4711 5 702 2779 78 15 5 chr11 15445472 15445873 -106397983 + BGLII LTR ERVK 1 405 -16 5 702 436 278 62 25 chr11 15445874 15446114 -106397742 - L1_Mur3 LINE L1 -1327 4553 4305 5 702 29 0 0 0 chr11 15446367 15446396 -106397460 + AT_rich Low_complexity Low_complexity 1 29 0 5 702 237 357 161 23 chr11 15448372 15448633 -106395223 + MLT2F LTR ERVL 296 592 -71 5 702 310 259 44 11 chr11 15449227 15449317 -106394539 - ORR1D2 LTR MaLR -37 333 241 5 702 690 13 0 0 chr11 15449523 15449602 -106394254 + (TAG)n Simple_repeat Simple_repeat 2 80 0 5 702 431 302 70 38 chr11 15449653 15449866 -106393990 - MLT2B4 LTR ERVL -336 220 1 5 702 297 299 117 0 chr11 15449916 15449993 -106393863 - ID_B1 SINE B4 -54 170 85 5 702 496 132 104 0 chr11 15450165 15450271 -106393585 - Lx3_Mus LINE L1 -10 6999 6883 5 702 23 0 0 0 chr11 15450274 15450297 -106393559 + AT_rich Low_complexity Low_complexity 1 23 0 5 702 22 35 0 0 chr11 15450327 15450356 -106393500 + AT_rich Low_complexity Low_complexity 1 29 0 5 702 279 328 23 15 chr11 15450456 15450589 -106393267 - Lx9 LINE L1 -195 7449 7316 5 702 1000 237 18 9 chr11 15450604 15450821 -106393035 + URR1B DNA MER1_type 7 225 0 5 702 460 327 24 55 chr11 15450823 15451100 -106392756 - Lx9 LINE L1 -330 7314 6915 5 702 936 277 59 14 chr11 15451133 15451422 -106392434 - Lx9 LINE L1 -924 6720 6419 5 702 298 289 50 30 chr11 15451737 15451837 -106392019 - RMER12 LTR ERVK -471 851 750 5 702 7944 173 14 4 chr11 15452111 15453892 -106389964 - Lx2 LINE L1 -5 6992 5195 5 702 958 168 0 0 chr11 15453896 15454063 -106389793 + L1_Mur2 LINE L1 4316 4482 -1395 5 702 437 276 58 19 chr11 15454078 15454233 -106389623 + RLTR16 LTR ERVK 332 492 -13 5 702 189 0 0 0 chr11 15454233 15454254 -106389602 + (A)n Simple_repeat Simple_repeat 1 21 0 5 702 15969 193 10 11 chr11 15454308 15457683 -106386173 + Lx LINE L1 1761 5133 -750 5 702 6284 160 8 4 chr11 15457682 15458720 -106385136 + Lx LINE L1 5613 6654 0 5 702 325 342 27 14 chr11 15458988 15459136 -106384720 + MLT1D LTR MaLR 354 503 -2 5 702 211 228 21 32 chr11 15459217 15459278 -106384578 + A-rich Low_complexity Low_complexity 4 63 0 5 702 773 53 0 0 chr11 15459278 15459424 -106384432 + L1Md_F2 LINE L1 6470 6582 0 5 702 21 82 0 0 chr11 15460328 15460377 -106383479 + AT_rich Low_complexity Low_complexity 1 49 0 5 702 408 345 42 0 chr11 15460445 15460587 -106383269 + B1F SINE Alu 1 148 -1 5 702 300 91 0 0 chr11 15460597 15460641 -106383215 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 702 23 0 0 0 chr11 15461016 15461039 -106382817 + AT_rich Low_complexity Low_complexity 1 23 0 5 702 574 215 26 20 chr11 15461735 15461887 -106381969 + Lx7 LINE L1 7542 7694 -2 5 702 217 337 0 0 chr11 15463516 15463608 -106380248 + L2 LINE L2 1995 2086 -1333 5 702 837 98 0 0 chr11 15463617 15463760 -106380096 + (TC)n Simple_repeat Simple_repeat 2 144 0 5 702 985 131 0 0 chr11 15463848 15463993 -106379863 + B1_Mus1 SINE Alu 2 146 -2 5 702 296 275 11 11 chr11 15464407 15464499 -106379357 - LTR40b LTR ERVL -33 429 338 5 702 601 214 47 8 chr11 15465359 15465486 -106378370 + ETnERV2-int LTR ERVK 7061 7192 -214 5 702 424 351 64 10 chr11 15466251 15466455 -106377401 - Lx8 LINE L1 -1048 6425 6211 5 703 279 0 0 0 chr11 15466500 15466531 -106377325 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 703 809 315 57 28 chr11 15466915 15467478 -106376378 - Lx8 LINE L1 -1677 5967 5350 5 703 733 323 52 10 chr11 15467505 15467912 -106375944 - Lx7 LINE L1 -1644 6052 5629 6 703 396 193 0 0 chr11 15467932 15468046 -106375810 + CT-rich Low_complexity Low_complexity 1 114 0 6 703 1901 258 52 37 chr11 15468064 15468760 -106375096 - Lx7 LINE L1 -283 5597 4892 6 703 2010 327 49 20 chr11 15468772 15469614 -106374242 + Lx7 LINE L1 6159 7024 -672 6 703 411 315 8 0 chr11 15469628 15469755 -106374101 + Lx6 LINE L1 7180 7307 -153 6 703 28 48 0 0 chr11 15469824 15469866 -106373990 + AT_rich Low_complexity Low_complexity 1 42 0 6 703 549 297 53 60 chr11 15469866 15470167 -106373689 + Lx7 LINE L1 7062 7360 -336 6 703 216 97 0 0 chr11 15470170 15470201 -106373655 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 703 404 261 42 60 chr11 15470987 15471154 -106372702 - RNLTR23 LTR ERVK 0 642 479 6 703 191 0 103 0 chr11 15473285 15473324 -106370532 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 703 189 175 0 0 chr11 15473703 15473743 -106370113 + A-rich Low_complexity Low_complexity 1 40 0 6 703 8259 105 9 16 chr11 15473933 15475193 -106368663 - Lx3_Mus LINE L1 -8 7001 5750 6 703 182 196 51 51 chr11 15475267 15475326 -106368530 + L3 LINE CR1 1360 1418 -3071 6 703 21 0 0 0 chr11 15475553 15475574 -106368282 + AT_rich Low_complexity Low_complexity 1 21 0 6 703 240 276 52 13 chr11 15475735 15475812 -106368044 - PB1D9 SINE Alu -32 88 9 6 703 21 36 0 0 chr11 15475936 15475964 -106367892 + AT_rich Low_complexity Low_complexity 1 28 0 6 703 291 241 14 55 chr11 15476140 15476285 -106367571 + (TAAA)n Simple_repeat Simple_repeat 2 140 0 6 703 25 75 0 0 chr11 15476375 15476428 -106367428 + AT_rich Low_complexity Low_complexity 1 53 0 6 703 22 70 0 0 chr11 15476723 15476766 -106367090 + AT_rich Low_complexity Low_complexity 1 43 0 6 703 2452 104 0 3 chr11 15476898 15477253 -106366603 - L1_Mus4 LINE L1 -7 6629 6276 6 703 813 271 49 69 chr11 15477311 15477858 -106365998 - L1_Mur3 LINE L1 -230 5650 5141 6 703 1269 226 93 6 chr11 15477857 15478178 -106365678 + Lx7 LINE L1 6765 7113 -583 6 703 252 259 57 29 chr11 15478172 15478347 -106365509 + Lx7 LINE L1 7369 7548 -148 6 703 1088 274 34 23 chr11 15478350 15478797 -106365059 - L1_Mur3 LINE L1 -743 5137 4726 6 703 29 47 0 0 chr11 15479023 15479066 -106364790 + AT_rich Low_complexity Low_complexity 1 43 0 6 703 226 0 0 56 chr11 15481576 15481612 -106362244 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 6 703 938 260 14 82 chr11 15481617 15481782 -106362074 - Lx7 LINE L1 -184 7512 7363 6 703 214 29 0 54 chr11 15481782 15481819 -106362037 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 703 938 260 14 82 chr11 15481819 15482018 -106361838 - Lx7 LINE L1 -334 7362 7173 6 703 348 278 0 22 chr11 15482013 15482105 -106361751 + Lx7 LINE L1 7083 7172 -524 6 703 2394 131 59 9 chr11 15482119 15482544 -106361312 - Lx3_Mus LINE L1 -684 6325 5880 6 703 4583 93 16 1 chr11 15482553 15483200 -106360656 + Lx3_Mus LINE L1 6346 7001 -8 6 703 332 315 14 91 chr11 15483214 15483357 -106360499 - B1_Mur1 SINE Alu 0 149 18 6 703 22 0 0 0 chr11 15483469 15483491 -106360365 + AT_rich Low_complexity Low_complexity 1 22 0 6 703 801 256 33 172 chr11 15483974 15484487 -106359369 - RLTR20D LTR ERVK 0 568 1 6 703 353 263 37 15 chr11 15484739 15484874 -106358982 + L1Md_F LINE L1 569 706 -5813 6 703 805 131 0 0 chr11 15484872 15485002 -106358854 + MusHAL1 LINE L1 1479 1608 -1104 6 703 2090 133 51 41 chr11 15484996 15485212 -106358644 + L1_Mus3 LINE L1 4286 4509 -1374 6 703 2995 48 0 0 chr11 15485212 15485569 -106358287 + IAPEY2_LTR LTR ERVK 1 357 0 6 703 2090 133 51 41 chr11 15485569 15485744 -106358112 + L1_Mus3 LINE L1 4510 4681 -1202 6 703 6864 98 48 4 chr11 15485748 15486818 -106357038 + L1_Mus3 LINE L1 5515 6631 -7 6 703 797 56 0 9 chr11 15486887 15486995 -106356861 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 6 703 932 134 0 0 chr11 15487000 15487134 -106356722 - B1_Mus2 SINE Alu -13 134 1 6 703 226 286 170 9 chr11 15487411 15487517 -106356339 - ORR1E LTR MaLR -38 321 199 6 703 24 0 0 0 chr11 15487761 15487785 -106356071 + AT_rich Low_complexity Low_complexity 1 24 0 6 703 1899 285 82 31 chr11 15487843 15488125 -106355731 - L1_Mur3 LINE L1 -724 5156 4858 6 703 189 0 0 0 chr11 15488125 15488146 -106355710 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 703 1899 285 82 31 chr11 15488146 15488812 -106355044 - L1_Mur3 LINE L1 -1023 4857 4159 6 703 3172 175 33 14 chr11 15488823 15489467 -106354389 - L1_Mur2 LINE L1 -488 5389 4734 6 703 910 218 62 25 chr11 15489586 15489826 -106354030 - RMER3D-int LTR ERVK -1056 1786 1538 6 703 5539 70 17 25 chr11 15489846 15490607 -106353249 + L1_Mus2 LINE L1 5812 6566 0 6 703 964 314 36 3 chr11 15490609 15490938 -106352918 + Lx8 LINE L1 6268 6607 -866 6 703 630 161 0 0 chr11 15490938 15491050 -106352806 + A-rich Low_complexity Low_complexity 3 114 0 6 703 1747 184 106 25 chr11 15491081 15491561 -106352295 - RMER3D-int LTR ERVK -1309 1533 1015 6 703 566 171 43 0 chr11 15491583 15491700 -106352156 - RMER3D-int LTR ERVK -2232 610 489 6 703 1471 164 0 112 chr11 15491815 15492145 -106351711 - BGLII_Mus LTR ERVK -2 420 128 6 703 3351 110 24 0 chr11 15492173 15492758 -106351098 - MusHAL1 LINE L1 -2146 1207 610 6 703 1800 145 3 3 chr11 15492767 15493061 -106350795 + L1_Mm LINE L1 3709 4003 -1880 6 703 4080 102 3 10 chr11 15493061 15493648 -106350208 + L1_Mus3 LINE L1 6053 6635 -3 6 703 1800 145 3 3 chr11 15493648 15493665 -106350191 + L1_Mm LINE L1 4004 4020 -1863 6 703 1202 202 4 8 chr11 15493666 15493911 -106349945 + RLTR11A LTR ERVK 282 525 -3 6 703 1634 248 17 60 chr11 15493933 15494401 -106349455 + Lx2B LINE L1 6542 6989 -11 6 703 26 0 0 0 chr11 15494797 15494823 -106349033 + AT_rich Low_complexity Low_complexity 1 26 0 6 703 23 0 0 0 chr11 15494980 15495003 -106348853 + AT_rich Low_complexity Low_complexity 1 23 0 6 703 311 341 15 80 chr11 15495114 15495251 -106348605 + B1_Mur1 SINE Alu 22 149 0 6 703 4227 132 34 6 chr11 15495274 15495976 -106347880 - Lx3_Mus LINE L1 -9 7000 6279 6 703 335 136 24 36 chr11 15495988 15496072 -106347784 + L1_Mus3 LINE L1 6512 6594 -44 6 703 4585 8 0 0 chr11 15496072 15496579 -106347277 + RLTR10-int LTR ERVK 1478 1984 -3 6 703 2824 44 2 101 chr11 15496581 15497009 -106346847 + RLTR10 LTR ERVK 1 386 -4 6 703 849 91 30 22 chr11 15497015 15497150 -106346706 - MTB_Mm LTR MaLR -271 136 1 6 703 737 249 11 0 chr11 15497155 15497332 -106346524 + RLTR11A LTR ERVK 345 523 -5 6 703 221 0 0 33 chr11 15497432 15497462 -106346394 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 703 26 30 0 0 chr11 15497583 15497616 -106346240 + AT_rich Low_complexity Low_complexity 1 33 0 6 703 239 172 0 45 chr11 15497882 15497949 -106345907 + A-rich Low_complexity Low_complexity 3 66 0 6 703 2750 119 2 5 chr11 15498069 15498491 -106345365 - BGLII LTR ERVK 0 421 1 6 703 3459 165 61 3 chr11 15498538 15499165 -106344691 + Lx2B LINE L1 6330 6992 -8 6 703 265 235 49 0 chr11 15499715 15499796 -106344060 - Lx9 LINE L1 -13 7631 7547 6 703 309 100 0 0 chr11 15499893 15499943 -106343913 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 703 597 319 11 49 chr11 15501152 15501416 -106342440 - Lx9 LINE L1 -451 7193 6940 1 703 307 302 78 117 chr11 15501420 15501806 -106342050 + RLTR23 LTR ERV1 1 371 -59 2 703 1604 255 61 52 chr11 15501806 15502542 -106341314 - L1_Rod LINE L1 -147 5730 5008 3 703 691 185 280 0 chr11 15502542 15502699 -106341157 - B3 SINE B2 -14 202 2 4 703 2918 290 45 63 chr11 15502699 15504544 -106339312 - L1_Rod LINE L1 -833 5044 3237 3 703 307 204 0 0 chr11 15504533 15504587 -106339269 - Lx4B LINE L1 -140 6918 6865 5 703 2318 231 10 12 chr11 15504587 15505007 -106338849 - Lx4B LINE L1 -295 6763 6343 5 703 441 0 0 0 chr11 15505007 15505056 -106338800 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 703 2318 231 10 12 chr11 15505056 15505151 -106338705 - Lx4B LINE L1 -716 6342 6250 5 703 5522 181 78 12 chr11 15505157 15506383 -106337473 + L1_Mur2 LINE L1 1599 2905 -2972 7 703 1114 348 39 26 chr11 15507058 15507566 -106336290 + Lx9 LINE L1 6341 6855 -789 8 703 1621 189 28 28 chr11 15507573 15507839 -106336017 + ORR1A2 LTR MaLR 1 269 -58 9 703 3416 37 0 128 chr11 15507839 15508339 -106335517 - RLTR10C LTR ERVK 0 436 1 1 703 1621 189 28 28 chr11 15508339 15508399 -106335457 + ORR1A2 LTR MaLR 270 327 0 9 703 8368 170 55 86 chr11 15508399 15510310 -106333546 + ORR1A2-int LTR MaLR 2 1852 -111 9 703 24 53 0 0 chr11 15510740 15510778 -106333078 + AT_rich Low_complexity Low_complexity 1 38 0 1 703 380 291 70 26 chr11 15510895 15511124 -106332732 - L1MEc LINE L1 -5488 912 674 1 703 461 223 345 7 chr11 15511126 15511279 -106332577 + B3 SINE B2 1 205 -11 1 703 2083 143 3 0 chr11 15511670 15511985 -106331871 + ORR1A2 LTR MaLR 10 325 -2 1 703 7443 306 38 30 chr11 15512857 15515008 -106328848 + MERVK26-int LTR ERVK 1224 3376 -3543 1 703 2185 124 12 0 chr11 15515008 15515331 -106328525 + ORR1A2 LTR MaLR 1 327 0 1 703 7443 306 38 30 chr11 15515331 15515866 -106327990 + MERVK26-int LTR ERVK 3377 3930 -2989 1 703 1116 88 0 0 chr11 15516416 15516564 -106327292 - B1_Mus1 SINE Alu 0 148 1 1 703 29 0 0 0 chr11 15516588 15516617 -106327239 + AT_rich Low_complexity Low_complexity 1 29 0 1 703 284 333 0 0 chr11 15516620 15516728 -106327128 - L1M5 LINE L1 -484 5640 5533 1 703 32 81 0 0 chr11 15516763 15516837 -106327019 + AT_rich Low_complexity Low_complexity 1 74 0 2 703 3717 191 12 30 chr11 15517257 15518018 -106325838 - Lx2 LINE L1 0 6997 6251 2 703 524 206 18 59 chr11 15518346 15518516 -106325340 + RNLTR23 LTR ERVK 480 642 0 2 703 1891 146 70 29 chr11 15518517 15518891 -106324965 - Lx2 LINE L1 -743 6254 5866 2 703 3361 120 254 85 chr11 15519504 15519896 -106323960 - RMER17A2 LTR ERVK 0 906 404 2 703 384 22 0 0 chr11 15519896 15519941 -106323915 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 703 576 0 0 0 chr11 15519941 15520004 -106323852 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 703 3361 120 254 85 chr11 15520004 15520385 -106323471 - RMER17A2 LTR ERVK -503 403 2 2 703 780 318 59 23 chr11 15521778 15522084 -106321772 - MER2 DNA MER2_type -16 329 13 2 703 249 304 36 76 chr11 15522577 15522801 -106321055 + B3 SINE B2 2 216 0 2 703 21 0 0 0 chr11 15523108 15523129 -106320727 + AT_rich Low_complexity Low_complexity 1 21 0 2 703 24 32 0 0 chr11 15523511 15523542 -106320314 + AT_rich Low_complexity Low_complexity 1 31 0 2 703 639 0 0 0 chr11 15523632 15523703 -106320153 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 703 960 61 92 0 chr11 15523703 15523834 -106320022 - B1_Mus2 SINE Alu -4 143 1 3 703 786 308 25 11 chr11 15523912 15524191 -106319665 - Lx7 LINE L1 -585 7111 6829 3 703 4724 100 6 10 chr11 15524528 15525203 -106318653 - L1_Mus3 LINE L1 -2 6636 5965 3 703 2964 102 6 4 chr11 15525203 15525751 -106318105 + L1_Mus3 LINE L1 5418 5967 -671 3 703 723 123 0 0 chr11 15526861 15526983 -106316873 + (TCC)n Simple_repeat Simple_repeat 3 124 0 3 703 709 303 85 31 chr11 15526985 15527278 -106316578 - Lx8 LINE L1 -735 6738 6430 3 703 357 291 80 13 chr11 15527288 15527438 -106316418 - Lx8 LINE L1 -1185 6288 6129 3 703 4060 143 71 10 chr11 15528278 15528985 -106314871 + Lx4A LINE L1 5962 6711 -347 3 703 294 29 0 0 chr11 15528985 15529020 -106314836 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 703 1082 218 35 8 chr11 15529021 15529280 -106314576 + Lx4A LINE L1 6769 7034 -24 3 703 6409 206 35 84 chr11 15529282 15531072 -106312784 - Lx8 LINE L1 -114 5766 4065 3 703 5019 295 50 10 chr11 15531076 15532673 -106311183 + Lx6 LINE L1 5793 7452 -8 3 703 10432 56 1 2 chr11 15532664 15533982 -106309874 + L1Md_F2 LINE L1 4270 5586 -297 3 703 7849 60 1 1 chr11 15533982 15534978 -106308878 + L1Md_F2 LINE L1 5587 6582 0 3 703 333 0 0 0 chr11 15535075 15535112 -106308744 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 4 703 298 250 11 0 chr11 15535166 15535258 -106308598 - L1M3 LINE L1 -2190 3950 3858 4 703 609 296 32 37 chr11 15537436 15537811 -106306045 - L1M2 LINE L1 -511 5789 5417 4 703 711 301 38 98 chr11 15538719 15539287 -106304569 + Lx8 LINE L1 5375 5927 -1717 4 703 1720 320 116 23 chr11 15539516 15540502 -106303354 + Lx8 LINE L1 6224 7300 -173 4 703 29 0 0 0 chr11 15540638 15540667 -106303189 + AT_rich Low_complexity Low_complexity 1 29 0 4 703 470 270 104 0 chr11 15540719 15540834 -106303022 - B3 SINE B2 -89 127 1 4 703 24 77 0 0 chr11 15540834 15540886 -106302970 + AT_rich Low_complexity Low_complexity 1 52 0 4 703 33 66 0 0 chr11 15541016 15541077 -106302779 + AT_rich Low_complexity Low_complexity 1 61 0 4 703 29 0 0 0 chr11 15542386 15542415 -106301441 + AT_rich Low_complexity Low_complexity 1 29 0 4 703 399 235 113 0 chr11 15542675 15542790 -106301066 + Lx9 LINE L1 7191 7318 -326 4 703 249 233 32 32 chr11 15542827 15542920 -106300936 + Lx9 LINE L1 7543 7635 -9 4 703 309 109 0 0 chr11 15543638 15543684 -106300172 + (T)n Simple_repeat Simple_repeat 1 46 0 5 703 1141 55 0 7 chr11 15543684 15543830 -106300026 - B1_Mus2 SINE Alu 0 147 3 5 703 297 0 0 0 chr11 15543830 15543863 -106299993 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 703 414 39 0 0 chr11 15543863 15543914 -106299942 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 703 463 331 36 77 chr11 15544263 15544459 -106299397 - B3A SINE B2 -2 196 9 5 703 22 56 0 0 chr11 15544508 15544544 -106299312 + AT_rich Low_complexity Low_complexity 1 36 0 5 703 1072 279 52 50 chr11 15544712 15545134 -106298722 + Lx9 LINE L1 7007 7429 -215 5 703 46 92 0 0 chr11 15545196 15545326 -106298530 + AT_rich Low_complexity Low_complexity 1 130 0 5 703 3919 143 4 2 chr11 15545351 15545999 -106297857 + RLTR22_Mur LTR ERVK 160 806 -1042 5 703 1682 140 4 4 chr11 15546182 15546440 -106297416 + RLTR22_Mur LTR ERVK 1591 1848 0 5 703 684 115 0 0 chr11 15546462 15546566 -106297290 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 703 23 0 0 0 chr11 15547612 15547635 -106296221 + AT_rich Low_complexity Low_complexity 1 23 0 6 703 297 0 0 0 chr11 15547763 15547796 -106296060 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 703 198 128 0 0 chr11 15547806 15547845 -106296011 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 6 703 234 91 0 0 chr11 15551204 15551237 -106292619 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 6 703 4159 113 43 3 chr11 15551843 15552489 -106291367 - L1_Mus3 LINE L1 -2 6636 5965 6 703 983 107 7 0 chr11 15552489 15552629 -106291227 + L1_Mm LINE L1 5418 5558 -325 6 703 11942 173 58 60 chr11 15552627 15555924 -106287932 - L1Md_F LINE L1 -2259 3624 260 6 703 27 73 0 0 chr11 15556121 15556176 -106287680 + AT_rich Low_complexity Low_complexity 1 55 0 6 703 312 365 153 0 chr11 15556258 15556428 -106287428 + B4A SINE B4 11 206 -86 6 703 315 121 0 0 chr11 15556490 15556548 -106287308 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 703 321 135 0 0 chr11 15556744 15556796 -106287060 + (A)n Simple_repeat Simple_repeat 1 52 0 7 703 356 380 28 14 chr11 15557601 15557812 -106286044 + L3 LINE CR1 3432 3645 -844 7 703 921 287 71 30 chr11 15559137 15559542 -106284314 - MTE2a LTR MaLR 0 419 1 7 703 273 250 32 21 chr11 15561967 15562061 -106281795 - MLT1A0 LTR MaLR -54 311 217 7 703 1122 271 44 13 chr11 15562099 15562630 -106281226 - Lx9 LINE L1 -1 7643 6928 7 703 1508 238 78 21 chr11 15562631 15563018 -106280838 + MTC LTR MaLR 9 417 -4 7 703 2129 255 62 25 chr11 15563018 15563618 -106280238 + Lx9 LINE L1 6407 7028 -616 7 703 779 72 9 0 chr11 15563618 15563729 -106280127 + (GAA)n Simple_repeat Simple_repeat 2 113 0 7 703 294 305 0 12 chr11 15563729 15563812 -106280044 + GA-rich Low_complexity Low_complexity 1 82 0 7 703 209 83 28 0 chr11 15564152 15564188 -106279668 + (TATG)n Simple_repeat Simple_repeat 2 38 0 7 703 315 266 144 31 chr11 15564208 15564464 -106279392 - L1MA7 LINE L1 -8 6283 5999 8 703 309 332 31 87 chr11 15564818 15565105 -106278751 - L1MA7 LINE L1 -758 5385 5115 8 703 1581 32 0 16 chr11 15565118 15565311 -106278545 - B2_Mm1a SINE B2 -2 191 2 8 703 527 222 103 0 chr11 15566365 15566491 -106277365 - ORR1C2 LTR MaLR -5 379 241 8 703 288 227 274 40 chr11 15566506 15566630 -106277226 - Lx8 LINE L1 -402 7071 6919 8 703 189 107 0 0 chr11 15567136 15567164 -106276692 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 703 16867 85 104 5 chr11 15567291 15571634 -106272222 + L1Md_A LINE L1 413 5589 -297 8 703 8244 36 7 0 chr11 15571634 15572623 -106271233 + L1Md_T LINE L1 5587 6582 0 8 703 31 58 0 0 chr11 15573104 15573156 -106270700 + AT_rich Low_complexity Low_complexity 1 52 0 8 703 5924 222 94 12 chr11 15574236 15576099 -106267757 + Lx5 LINE L1 5045 7049 -1 8 703 231 164 0 35 chr11 15576492 15576549 -106267307 + Lx4A LINE L1 7004 7058 0 8 703 40 0 0 0 chr11 15576554 15576594 -106267262 + AT_rich Low_complexity Low_complexity 1 40 0 9 703 180 158 0 0 chr11 15576931 15576969 -106266887 + T-rich Low_complexity Low_complexity 4 41 0 9 703 303 317 199 6 chr11 15577098 15577279 -106266577 - L1M5 LINE L1 -365 5814 5599 9 703 27 0 0 0 chr11 15577698 15577725 -106266131 + AT_rich Low_complexity Low_complexity 1 27 0 9 703 437 345 30 59 chr11 15577906 15578109 -106265747 - B3A SINE B2 -1 197 1 9 703 523 245 48 14 chr11 15578314 15578459 -106265397 + MT2B LTR ERVL 391 540 -61 9 703 1035 128 0 0 chr11 15578465 15578629 -106265227 + (TA)n Simple_repeat Simple_repeat 1 164 0 9 703 299 25 25 0 chr11 15578629 15578668 -106265188 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 703 1892 72 0 4 chr11 15578779 15579029 -106264827 - L1_Mus2 LINE L1 -2 6564 6316 9 703 1045 93 7 0 chr11 15579739 15579879 -106263977 + B1_Mus2 SINE Alu 1 141 -6 9 703 28 0 0 0 chr11 15579940 15579968 -106263888 + AT_rich Low_complexity Low_complexity 1 28 0 1 703 1055 276 102 15 chr11 15580159 15580501 -106263355 - ORR1D1 LTR MaLR -2 372 1 1 703 879 198 10 0 chr11 15581253 15581445 -106262411 - Lx LINE L1 0 6654 6461 1 703 186 43 0 0 chr11 15581464 15581487 -106262369 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1 703 9753 165 24 29 chr11 15581495 15584679 -106259177 - Lx2 LINE L1 -4 6993 3819 1 703 494 331 75 30 chr11 15584739 15585289 -106258567 - L1MC LINE L1 -2436 5559 4983 1 703 4457 195 103 32 chr11 15586768 15587784 -106256072 + Lx2 LINE L1 5908 6995 -2 1 703 824 177 160 0 chr11 15587779 15587954 -106255902 + Lx2 LINE L1 6369 6571 -426 1 703 21 36 0 0 chr11 15588986 15589014 -106254842 + AT_rich Low_complexity Low_complexity 1 28 0 1 703 804 272 42 126 chr11 15590189 15590609 -106253247 + L1VL1 LINE L1 26 611 -5807 1 703 357 294 37 0 chr11 15590639 15590775 -106253081 + L1Md_F LINE L1 578 718 -5801 1 703 1149 198 24 0 chr11 15590772 15591025 -106252831 + L1Md_F LINE L1 628 886 -5633 1 703 16948 191 11 121 chr11 15591014 15592324 -106251532 + L1_Mus2 LINE L1 1661 2962 -2924 1 703 1221 55 0 6 chr11 15592324 15592487 -106251369 - L1Md_T LINE L1 0 6582 6421 1 703 17614 130 12 22 chr11 15592487 15596604 -106247252 + L1_Mus2 LINE L1 2950 6566 0 1 703 23 33 0 0 chr11 15596675 15596705 -106247151 + AT_rich Low_complexity Low_complexity 1 30 0 1 703 423 0 0 0 chr11 15597062 15597109 -106246747 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 704 2404 159 55 2 chr11 15598341 15598756 -106245100 + Lx3A LINE L1 6537 6973 -8 1 704 388 299 76 51 chr11 15600057 15600371 -106243485 + L1MC LINE L1 3656 3977 -2169 1 704 729 64 0 0 chr11 15601115 15601209 -106242647 - ORR1A3 LTR MaLR 0 326 233 1 704 2215 254 187 47 chr11 15601205 15601528 -106242328 - ORR1A2-int LTR MaLR -675 1288 963 1 704 6961 39 0 0 chr11 15601528 15602359 -106241497 - L1Md_T LINE L1 0 6582 5752 1 704 2215 254 187 47 chr11 15602359 15603165 -106240691 - ORR1A2-int LTR MaLR -1001 962 1 1 704 1959 138 25 3 chr11 15603165 15603485 -106240371 - ORR1A2 LTR MaLR 0 327 1 1 704 21 36 0 0 chr11 15603588 15603616 -106240240 + AT_rich Low_complexity Low_complexity 1 28 0 1 704 3237 108 10 4 chr11 15603851 15604333 -106239523 - L1_Mus3 LINE L1 -74 6564 6080 1 704 2345 97 170 2 chr11 15604344 15604756 -106239100 + L1_Mus3 LINE L1 5588 6068 -570 1 704 24 0 0 0 chr11 15606207 15606231 -106237625 + AT_rich Low_complexity Low_complexity 1 24 0 1 704 1074 103 0 0 chr11 15607437 15607583 -106236273 - B1_Mus2 SINE Alu 0 147 2 1 704 414 0 0 0 chr11 15608275 15608321 -106235535 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 704 1422 221 53 56 chr11 15608532 15608906 -106234950 - ORR1C1 LTR MaLR -3 375 3 1 704 741 332 34 34 chr11 15609011 15609273 -106234583 - B4A SINE B4 -15 277 16 1 704 936 295 76 27 chr11 15610814 15611612 -106232244 - L1MA6 LINE L1 -384 5916 5076 1 704 3263 113 25 74 chr11 15611637 15612208 -106231648 - Lx3_Mus LINE L1 -8 7001 6459 1 704 3408 87 27 25 chr11 15612208 15612729 -106231127 + Lx3_Mus LINE L1 5952 6473 -536 1 704 463 312 76 10 chr11 15612728 15613042 -106230814 - L1MA6 LINE L1 -1073 5070 4736 1 704 234 160 0 0 chr11 15613247 15613297 -106230559 + T-rich Low_complexity Low_complexity 4 53 0 1 704 288 53 0 0 chr11 15615006 15615044 -106228812 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 704 208 77 25 25 chr11 15615551 15615591 -106228265 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 704 183 207 98 49 chr11 15615742 15615803 -106228053 + L4 LINE RTE 1386 1449 -580 1 704 1998 142 15 0 chr11 15616335 15616667 -106227189 - Lx2 LINE L1 -939 6058 5722 1 704 5227 167 25 12 chr11 15616667 15617313 -106226543 + Lx2 LINE L1 6035 6694 -303 1 704 189 0 0 0 chr11 15617313 15617334 -106226522 + (CCCCCA)n Simple_repeat Simple_repeat 5 25 0 1 704 5227 167 25 12 chr11 15617334 15617631 -106226225 + Lx2 LINE L1 6695 6991 -6 1 704 183 205 0 0 chr11 15617632 15617671 -106226185 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 704 216 149 0 0 chr11 15617925 15617972 -106225884 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 704 664 176 19 12 chr11 15618003 15618164 -106225692 + L1_Mur3 LINE L1 3321 3482 -2395 1 704 5370 60 7 5 chr11 15618174 15618900 -106224956 + ORR1A1-int LTR MaLR 583 1792 0 1 704 2756 64 0 3 chr11 15618900 15619247 -106224609 + ORR1A1 LTR MaLR 1 346 0 1 704 2501 227 22 180 chr11 15619247 15619806 -106224050 + L1_Mur3 LINE L1 4459 4862 -1018 1 704 1118 62 0 14 chr11 15619806 15619954 -106223902 - B1_Mus1 SINE Alu -2 146 1 1 704 2501 227 22 180 chr11 15619954 15620538 -106223318 + L1_Mur3 LINE L1 4863 5421 -459 1 704 10503 216 46 44 chr11 15620568 15621668 -106222188 + L1VL4 LINE L1 280 1337 -2480 1 704 3080 54 8 0 chr11 15621668 15622060 -106221796 - MTA_Mm LTR MaLR 0 396 2 1 704 352 22 0 0 chr11 15622061 15622107 -106221749 - MT-int LTR MaLR 0 1098 1053 1 704 10503 127 26 40 chr11 15622107 15623797 -106220059 + L1VL4 LINE L1 1339 3025 -792 1 704 6168 95 7 9 chr11 15623797 15624678 -106219178 + L1_Mus3 LINE L1 5760 6638 0 1 704 301 274 63 0 chr11 15624724 15624819 -106219037 + L1_Mur1 LINE L1 5420 5520 -366 1 704 5723 222 47 17 chr11 15624808 15626331 -106217525 + Lx5 LINE L1 5462 7033 -17 1 704 2040 197 20 64 chr11 15627137 15628010 -106215846 + Lx3C LINE L1 6214 6963 -10 1 704 25 31 0 0 chr11 15628010 15628042 -106215814 + AT_rich Low_complexity Low_complexity 1 32 0 1 704 423 0 0 0 chr11 15628315 15628362 -106215494 + (A)n Simple_repeat Simple_repeat 1 47 0 1 704 245 264 0 19 chr11 15628696 15628750 -106215106 + MTEa LTR MaLR 280 332 -47 1 704 37039 28 2 7 chr11 15629281 15634669 -106209187 + L1Md_A LINE L1 232 5586 -297 1 704 8022 46 8 0 chr11 15634669 15635655 -106208201 + L1Md_A LINE L1 5587 6580 -2 1 704 922 60 13 19 chr11 15635878 15636032 -106207824 + (GAGAA)n Simple_repeat Simple_repeat 5 157 0 1 704 462 314 98 38 chr11 15636281 15636546 -106207310 - MER89 LTR ERV1 -5 554 274 1 704 23 54 0 0 chr11 15636902 15636939 -106206917 + AT_rich Low_complexity Low_complexity 1 37 0 1 704 324 250 11 20 chr11 15637068 15637166 -106206690 - PB1D10 SINE Alu -13 104 8 1 704 222 318 16 16 chr11 15637115 15637179 -106206677 - ID_B1 SINE B4 -88 136 73 1 704 344 313 59 20 chr11 15637628 15637729 -106206127 + PB1D10 SINE Alu 8 112 -37 1 704 2140 249 33 14 chr11 15637733 15638250 -106205606 - RLTR11A LTR ERVK 0 528 2 1 704 1035 115 0 0 chr11 15638271 15638428 -106205428 + (GGAA)n Simple_repeat Simple_repeat 3 159 0 1 704 664 312 90 101 chr11 15639610 15639966 -106203890 - MTE2a LTR MaLR -13 366 15 1 704 2388 58 0 13 chr11 15640207 15640521 -106203335 - L1Md_F2 LINE L1 -3 6579 6270 1 704 423 316 57 6 chr11 15640561 15640720 -106203136 - Lx9 LINE L1 -1128 6516 6350 1 704 204 40 0 0 chr11 15640722 15640747 -106203109 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 704 263 125 54 0 chr11 15641008 15641064 -106202792 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1 704 189 0 0 0 chr11 15641108 15641129 -106202727 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 704 634 328 91 23 chr11 15641130 15641526 -106202330 + Lx9 LINE L1 6520 6942 -702 1 704 1098 267 26 29 chr11 15641538 15641847 -106202009 - Lx5 LINE L1 -6 7044 6737 1 704 240 268 67 89 chr11 15641871 15641961 -106201895 + Lx8 LINE L1 6828 6915 -558 1 704 226 357 0 14 chr11 15641972 15642043 -106201813 - Helitron3Na_Mam RC Helitron -235 251 182 1 704 339 136 0 0 chr11 15642188 15642247 -106201609 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 704 285 225 0 0 chr11 15642390 15642479 -106201377 + GA-rich Low_complexity Low_complexity 1 89 0 1 704 592 240 89 0 chr11 15642635 15642814 -106201042 + L1_Rod LINE L1 2295 2489 -3358 1 704 375 360 28 21 chr11 15643056 15643198 -106200658 + B3A SINE B2 8 150 -48 1 704 296 200 0 10 chr11 15643270 15643371 -106200485 + CT-rich Low_complexity Low_complexity 1 100 0 1 704 237 210 0 0 chr11 15643501 15643563 -106200293 + T-rich Low_complexity Low_complexity 1 62 0 1 704 1400 65 38 0 chr11 15643927 15644113 -106199743 + B2_Mm2 SINE B2 2 194 -1 1 704 23 33 0 0 chr11 15644608 15644638 -106199218 + AT_rich Low_complexity Low_complexity 1 30 0 1 704 975 139 16 38 chr11 15646137 15646402 -106197454 - RMER17D2 LTR ERVK 0 809 600 1 704 286 343 9 9 chr11 15646903 15647012 -106196844 + MER21B LTR ERV1 222 330 -533 1 704 3802 167 50 11 chr11 15647146 15647922 -106195934 + Lx4B LINE L1 4864 5669 -1389 1 704 435 254 103 0 chr11 15647927 15648053 -106195803 + Lx9 LINE L1 6911 7049 -595 1 704 281 287 50 42 chr11 15648855 15648975 -106194881 + RMER5 LTR ERV1 414 534 0 1 704 189 0 0 0 chr11 15649012 15649033 -106194823 + (T)n Simple_repeat Simple_repeat 1 21 0 1 704 3258 104 2 16 chr11 15649052 15649548 -106194308 - L1Md_F2 LINE L1 -2 6580 6092 1 704 1353 78 0 0 chr11 15649549 15649728 -106194128 + L1Md_F2 LINE L1 5933 6111 -471 1 704 6586 87 22 4 chr11 15649739 15650655 -106193201 - L1Md_F2 LINE L1 0 6582 5651 1 704 4911 89 5 0 chr11 15650638 15651314 -106192542 + Lx6 LINE L1 5006 5682 -1778 1 704 279 0 0 0 chr11 15651929 15651960 -106191896 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 704 813 73 0 9 chr11 15652761 15652872 -106190984 + B1_Mm SINE Alu 1 110 -37 1 704 216 91 0 0 chr11 15652872 15652893 -106190963 + (A)n Simple_repeat Simple_repeat 1 21 0 1 704 285 29 0 0 chr11 15652893 15652927 -106190929 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1 704 216 91 0 0 chr11 15652927 15652938 -106190918 + (A)n Simple_repeat Simple_repeat 1 11 0 1 704 23 33 0 0 chr11 15653213 15653243 -106190613 + AT_rich Low_complexity Low_complexity 1 30 0 1 704 8088 152 22 31 chr11 15653273 15654939 -106188917 + Lx3C LINE L1 5322 6976 0 1 704 391 303 0 27 chr11 15655150 15655296 -106188560 + HAL1-2a_MD LINE L1 2345 2486 -538 1 704 321 89 0 0 chr11 15655447 15655492 -106188364 + (A)n Simple_repeat Simple_repeat 1 45 0 1 704 217 49 47 47 chr11 15655654 15655697 -106188159 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 704 280 257 0 0 chr11 15657991 15658065 -106185791 + GA-rich Low_complexity Low_complexity 2 75 0 1 704 373 303 78 60 chr11 15658658 15659044 -106184812 - L1MCa LINE L1 -5344 1164 772 1 704 302 0 26 0 chr11 15659162 15659200 -106184656 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 704 1904 268 79 88 chr11 15660046 15661606 -106182250 - RMER1B Other Other -3 1063 1 1 704 326 233 176 22 chr11 15661592 15661728 -106182128 - RMER1B Other Other -651 415 259 2 704 448 188 225 25 chr11 15661990 15662110 -106181746 + MT2A LTR ERVL 1 144 -389 2 704 325 309 0 20 chr11 15662112 15662211 -106181645 + MT2A LTR ERVL 99 195 -338 2 704 1142 56 0 7 chr11 15663358 15663503 -106180353 + B1_Mus1 SINE Alu 1 144 -4 2 704 22 35 0 0 chr11 15663575 15663604 -106180252 + AT_rich Low_complexity Low_complexity 1 29 0 2 704 188 196 130 0 chr11 15665615 15665661 -106178195 + L3 LINE CR1 765 816 -3673 2 704 235 266 26 34 chr11 15667304 15667421 -106176435 - L1_Rod LINE L1 -3123 2724 2609 2 704 716 293 31 13 chr11 15667475 15667827 -106176029 + L1M2 LINE L1 3841 4229 -1914 2 704 225 239 22 11 chr11 15667830 15667919 -106175937 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 2 704 288 0 0 0 chr11 15667980 15668012 -106175844 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 704 3812 70 0 0 chr11 15668130 15668618 -106175238 - L1_Mus1 LINE L1 -2 6565 6078 2 704 23 33 0 0 chr11 15669132 15669162 -106174694 + AT_rich Low_complexity Low_complexity 1 30 0 2 704 1354 286 22 88 chr11 15669272 15669805 -106174051 - RMER5 LTR ERV1 -4 530 33 2 704 204 300 14 14 chr11 15669925 15669996 -106173860 + GA-rich Low_complexity Low_complexity 4 74 0 2 704 477 0 0 0 chr11 15670005 15670058 -106173798 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 704 324 70 0 0 chr11 15671025 15671068 -106172788 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 704 320 208 0 0 chr11 15673297 15673350 -106170506 - Lx LINE L1 -604 7092 7040 2 704 987 232 100 12 chr11 15673390 15673748 -106170108 - L1_Rod LINE L1 -4447 1400 1013 2 704 286 70 0 0 chr11 15673789 15673846 -106170010 - L1_Mus4 LINE L1 0 6636 6580 2 704 2206 157 81 30 chr11 15673845 15674251 -106169605 - Lx LINE L1 -226 6428 6002 2 704 1221 85 0 0 chr11 15674400 15674576 -106169280 + (GGGGA)n Simple_repeat Simple_repeat 1 176 0 2 704 309 51 0 0 chr11 15674576 15674615 -106169241 + (GAGAA)n Simple_repeat Simple_repeat 4 42 0 2 704 311 241 50 12 chr11 15674900 15674980 -106168876 - RMER15 LTR ERVL -55 520 438 2 704 8162 43 9 4 chr11 15674980 15676371 -106167485 - L1Md_F3 LINE L1 -3 6581 5181 2 704 4320 49 31 0 chr11 15676363 15676917 -106166939 + L1Md_F3 LINE L1 4619 5189 -694 2 704 308 351 129 24 chr11 15676921 15677131 -106166725 - RMER15 LTR ERVL -119 456 225 2 704 23 0 0 0 chr11 15677356 15677379 -106166477 + AT_rich Low_complexity Low_complexity 1 23 0 2 704 23 33 0 0 chr11 15677598 15677628 -106166228 + AT_rich Low_complexity Low_complexity 1 30 0 2 704 21 0 0 0 chr11 15677697 15677718 -106166138 + AT_rich Low_complexity Low_complexity 1 21 0 2 704 35419 36 0 0 chr11 15678143 15683568 -106160288 + L1Md_T LINE L1 68 5589 -297 2 704 8944 7 0 0 chr11 15683568 15684564 -106159292 + L1Md_T LINE L1 5590 6585 0 2 704 23 0 0 0 chr11 15684564 15684587 -106159269 + AT_rich Low_complexity Low_complexity 1 23 0 2 704 252 289 29 49 chr11 15685136 15685238 -106158618 + L1_Rod LINE L1 5431 5530 -317 2 704 7811 118 3 1 chr11 15685234 15687130 -106156726 - L1_Mus3 LINE L1 -1 6637 4738 2 704 5825 127 9 2 chr11 15687129 15688061 -106155795 + L1_Mus3 LINE L1 3692 4629 -1254 2 704 229 170 21 0 chr11 15688054 15688101 -106155755 + L1M5 LINE L1 5579 5626 -818 2 704 618 265 0 8 chr11 15688164 15688297 -106155559 - B1_Mus1 SINE Alu -1 147 16 2 704 340 260 44 80 chr11 15688208 15688321 -106155535 - MT2B LTR ERVL -343 258 150 2 704 683 226 8 0 chr11 15688528 15688661 -106155195 - B1_Mus1 SINE Alu -1 147 14 2 704 385 331 47 18 chr11 15689845 15690014 -106153842 - RMER15 LTR ERVL -66 509 336 2 704 747 353 46 39 chr11 15690449 15690906 -106152950 + LTR40b LTR ERVL 3 462 0 2 704 32603 93 10 12 chr11 15691107 15697284 -106146572 - L1Md_F2 LINE L1 -12 6570 404 2 704 609 167 23 31 chr11 15698102 15698232 -106145624 - Lx9 LINE L1 -196 7448 7320 2 704 448 183 53 38 chr11 15698226 15698357 -106145499 + Lx9 LINE L1 7510 7642 -2 2 704 285 109 0 0 chr11 15698377 15698423 -106145433 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 704 237 33 0 0 chr11 15698631 15698661 -106145195 + (GGAGAA)n Simple_repeat Simple_repeat 1 30 0 2 704 23 0 0 0 chr11 15698796 15698819 -106145037 + AT_rich Low_complexity Low_complexity 1 23 0 2 704 21 36 0 0 chr11 15699061 15699089 -106144767 + AT_rich Low_complexity Low_complexity 1 28 0 2 704 429 81 0 0 chr11 15699145 15699207 -106144649 + (CACTT)n Simple_repeat Simple_repeat 5 66 0 2 704 26 30 0 0 chr11 15699239 15699272 -106144584 + AT_rich Low_complexity Low_complexity 1 33 0 2 704 3073 182 21 50 chr11 15699318 15699941 -106143915 - RLTR1D LTR ERV1 0 605 1 2 704 6433 154 45 21 chr11 15700249 15702212 -106141644 + L1VL4 LINE L1 298 2229 -1588 2 704 1172 55 0 0 chr11 15702204 15702349 -106141507 + L1Md_F2 LINE L1 5441 5585 -298 2 704 8126 36 4 2 chr11 15702350 15703325 -106140531 + L1Md_F2 LINE L1 5587 6563 -19 2 704 1995 84 0 0 chr11 15703325 15703599 -106140257 - MTA_Mm-int LTR MaLR -824 274 1 2 704 3333 38 2 2 chr11 15703599 15703995 -106139861 - MTA_Mm LTR MaLR 0 396 1 2 704 7571 126 19 6 chr11 15703995 15705267 -106138589 - MusHAL1 LINE L1 -308 2404 1117 2 704 8052 77 133 2 chr11 15705274 15707291 -106136565 - L1_Mus1 LINE L1 -1 6566 4211 2 704 6003 54 9 0 chr11 15707292 15708070 -106135786 + MTA_Mm-int LTR MaLR 314 1098 0 2 704 3047 61 10 5 chr11 15708070 15708464 -106135392 + MTA_Mm LTR MaLR 1 396 0 2 704 14191 119 12 15 chr11 15708464 15711442 -106132414 + L1_Mus2 LINE L1 3597 6565 -1 2 704 22 0 0 0 chr11 15711445 15711467 -106132389 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 186 103 0 0 chr11 15712768 15712797 -106131059 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2 704 357 199 152 8 chr11 15712800 15712932 -106130924 + Lx9 LINE L1 7487 7637 -7 2 704 826 316 72 22 chr11 15713078 15713356 -106130500 - MTE2a LTR MaLR -8 371 80 2 704 229 361 68 20 chr11 15713419 15713566 -106130290 - MTE-int LTR MaLR -8 1572 1419 2 704 315 312 9 52 chr11 15713721 15713836 -106130020 + L1ME3 LINE L1 5828 5937 -225 2 704 306 0 0 0 chr11 15714534 15714568 -106129288 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 704 1373 341 83 14 chr11 15714608 15715345 -106128511 - Lx8 LINE L1 -96 7377 6590 2 704 540 284 74 93 chr11 15715346 15715723 -106128133 + ORR1D2 LTR MaLR 1 370 0 2 704 489 76 0 0 chr11 15715747 15715813 -106128043 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2 704 363 44 0 0 chr11 15715930 15715975 -106127881 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2 704 367 319 103 7 chr11 15715994 15716130 -106127726 - RSINE1 SINE B4 -16 149 1 2 704 214 208 0 20 chr11 15716756 15716805 -106127051 - B1_Mur2 SINE Alu -3 146 99 2 704 24 77 0 0 chr11 15716917 15716969 -106126887 + AT_rich Low_complexity Low_complexity 1 52 0 2 704 1347 292 13 32 chr11 15717301 15717679 -106126177 - MTD LTR MaLR -5 414 44 2 704 442 323 67 0 chr11 15717971 15718166 -106125690 + B3 SINE B2 5 212 -4 2 704 1444 264 85 0 chr11 15718234 15718586 -106125270 - Lx5 LINE L1 -45 7005 6624 2 704 1937 165 69 133 chr11 15718729 15719338 -106124518 - RMER17D2 LTR ERVK 0 809 240 2 704 862 281 9 19 chr11 15719457 15719667 -106124189 + B3 SINE B2 9 216 0 2 704 26 30 0 0 chr11 15720383 15720416 -106123440 + AT_rich Low_complexity Low_complexity 1 33 0 2 704 351 0 0 0 chr11 15720750 15720789 -106123067 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 704 1112 97 0 0 chr11 15721101 15721246 -106122610 - B1_Mus2 SINE Alu 0 147 3 2 704 23957 157 52 52 chr11 15722045 15723649 -106120207 - Lx LINE L1 -2 6652 5362 2 704 8351 38 0 0 chr11 15723649 15724645 -106119211 + L1Md_T LINE L1 5587 6582 0 2 704 23957 148 17 90 chr11 15724645 15726123 -106117733 - Lx LINE L1 -522 5361 3862 2 704 189 0 0 0 chr11 15726123 15726144 -106117712 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 10 23957 150 24 80 chr11 15726144 15729578 -106114278 - Lx LINE L1 -2022 3861 410 2 705 3197 37 0 0 chr11 15729960 15730343 -106113513 - L1Md_T LINE L1 -1 6581 6199 2 705 1433 222 62 0 chr11 15730385 15730673 -106113183 + Lx4A LINE L1 6753 7058 0 2 705 324 70 0 0 chr11 15731176 15731219 -106112637 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 705 269 254 199 55 chr11 15731247 15731393 -106112463 + MER63B DNA AcHobo 270 436 0 2 705 1153 82 0 0 chr11 15732552 15732699 -106111157 + B1_Mus1 SINE Alu 1 147 -1 2 705 534 173 0 0 chr11 15732700 15732804 -106111052 + A-rich Low_complexity Low_complexity 1 104 0 2 705 360 0 0 0 chr11 15733154 15733194 -106110662 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 705 378 0 0 0 chr11 15733225 15733267 -106110589 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 2 705 3534 172 39 15 chr11 15733574 15734301 -106109555 + Lx5 LINE L1 3351 4094 -1783 2 705 9602 128 16 68 chr11 15734301 15734778 -106109078 + RLTR22_Mur LTR ERVK 1 460 -1388 2 705 2248 67 0 0 chr11 15734778 15735063 -106108793 - L1_Mus1 LINE L1 -4 6563 6279 2 705 9602 139 19 67 chr11 15735063 15736409 -106107447 + RLTR22_Mur LTR ERVK 461 1664 -184 2 705 396 0 0 0 chr11 15736409 15736453 -106107403 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 705 569 339 83 59 chr11 15736453 15736520 -106107336 + RLTR22_Mur LTR ERVK 1254 1318 -4 2 705 8666 186 26 5 chr11 15736524 15737594 -106106262 + Lx5 LINE L1 4089 5189 -688 2 705 396 0 0 0 chr11 15737594 15737638 -106106218 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 705 8666 188 35 7 chr11 15737638 15738570 -106105286 + Lx5 LINE L1 5190 6162 -888 2 705 3926 225 27 5 chr11 15739163 15739989 -106103867 + Lx5 LINE L1 6166 7009 -41 2 705 2100 103 24 69 chr11 15739993 15740352 -106103504 + RMER17A LTR ERVK 1 343 -408 2 705 1007 79 24 0 chr11 15740352 15740516 -106103340 + (TC)n Simple_repeat Simple_repeat 2 169 0 2 705 2100 217 50 59 chr11 15740516 15740863 -106102993 + RMER17A LTR ERVK 344 751 0 2 705 357 215 64 4 chr11 15741763 15741866 -106101990 + L1MB1 LINE L1 6052 6159 -132 2 705 390 21 0 0 chr11 15742103 15742150 -106101706 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 705 1818 217 67 67 chr11 15742353 15742759 -106101097 + RLTR16 LTR ERVK 1 400 -105 2 705 441 0 0 0 chr11 15742759 15742808 -106101048 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 705 1818 217 67 67 chr11 15742808 15742894 -106100962 + RLTR16 LTR ERVK 401 493 -12 2 705 10642 165 14 32 chr11 15743823 15744304 -106099552 + L1_Mur1 LINE L1 3756 4224 -1662 2 705 4431 93 26 91 chr11 15744304 15745105 -106098751 + RMER17A LTR ERVK 1 749 -2 2 705 10642 165 14 32 chr11 15745105 15746768 -106097088 + L1_Mur1 LINE L1 4225 5862 -24 2 705 2282 179 64 7 chr11 15746773 15747224 -106096632 + Lx3C LINE L1 6495 6971 -5 2 705 181 0 69 0 chr11 15747229 15747258 -106096598 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 705 561 321 59 16 chr11 15749589 15749912 -106093944 + Lx9 LINE L1 7146 7482 -162 2 705 24 32 0 0 chr11 15750214 15750245 -106093611 + AT_rich Low_complexity Low_complexity 1 31 0 3 705 8398 106 58 13 chr11 15750384 15751700 -106092156 - Lx3_Mus LINE L1 0 7009 5634 3 705 211 258 30 0 chr11 15751921 15751987 -106091869 + GA-rich Low_complexity Low_complexity 1 68 0 3 705 43 47 0 0 chr11 15752936 15753000 -106090856 + AT_rich Low_complexity Low_complexity 1 64 0 3 705 320 298 41 22 chr11 15754639 15754834 -106089022 - L1M4 LINE L1 -1954 4192 3994 3 705 34849 13 0 0 chr11 15755108 15759818 -106084038 - L1Md_A LINE L1 0 6582 1873 3 705 2434 93 66 23 chr11 15759818 15760212 -106083644 + IAPLTR2a LTR ERVK 1 411 0 3 705 310 92 0 85 chr11 15760214 15760273 -106083583 + IAPEz-int LTR ERVK 3 56 -1931 3 705 891 112 32 91 chr11 15760274 15760461 -106083395 + IAPEz-int LTR ERVK 20 195 -6286 3 705 237 302 0 0 chr11 15760461 15760514 -106083342 + RLTR27 LTR ERVK 223 275 -34 3 705 286 81 0 0 chr11 15760514 15760551 -106083305 + IAPEz-int LTR ERVK 145 181 -7400 3 705 227 273 0 0 chr11 15760551 15760595 -106083261 + RLTR27 LTR ERVK 232 275 -34 3 705 673 117 29 10 chr11 15760595 15760699 -106083157 + IAPEz-int LTR ERVK 145 250 -7331 3 705 252 309 0 0 chr11 15760699 15760754 -106083102 + RLTR27 LTR ERVK 221 275 -34 3 705 3367 62 22 16 chr11 15760754 15761320 -106082536 + IAPEz-int LTR ERVK 168 662 -5819 3 705 2226 65 0 0 chr11 15761320 15761598 -106082258 + IAPEz-int LTR ERVK 1359 1636 -4845 3 705 6038 42 5 12 chr11 15761597 15762348 -106081508 + IAPEz-int LTR ERVK 5736 6481 0 3 705 2459 86 68 25 chr11 15762348 15762742 -106081114 + IAPLTR2a LTR ERVK 1 411 0 3 705 7490 17 5 25 chr11 15762742 15764249 -106079607 - L1Md_A LINE L1 -4005 1878 408 3 705 348 284 123 52 chr11 15764322 15764534 -106079322 - L1M4 LINE L1 -2540 3606 3380 3 705 324 0 0 0 chr11 15764811 15764847 -106079009 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 3 705 363 96 0 0 chr11 15765075 15765127 -106078729 + (A)n Simple_repeat Simple_repeat 1 52 0 3 705 195 42 0 0 chr11 15765124 15765148 -106078708 + (CAAAG)n Simple_repeat Simple_repeat 2 25 0 3 705 3317 337 37 26 chr11 15765294 15767647 -106076209 - ETnERV-int LTR ERVK -3552 2615 369 3 705 207 0 0 0 chr11 15767882 15767905 -106075951 + (T)n Simple_repeat Simple_repeat 1 23 0 3 705 724 282 14 97 chr11 15767974 15768264 -106075592 - RLTR9A LTR ERVK 0 368 103 3 705 4565 134 23 1 chr11 15768432 15769178 -106074678 - Lx LINE L1 -10 6644 5883 3 705 241 190 17 0 chr11 15769516 15769599 -106074257 + (TTG)n Simple_repeat Simple_repeat 1 84 0 3 705 423 318 83 34 chr11 15769936 15770219 -106073637 - Lx8 LINE L1 -595 7101 6817 3 705 273 247 188 38 chr11 15770336 15770496 -106073360 - L1M4 LINE L1 -5512 1030 847 3 705 371 341 59 59 chr11 15770964 15771304 -106072552 - L1M4 LINE L1 -6178 364 25 3 705 185 59 59 0 chr11 15771346 15771380 -106072476 + (TTAA)n Simple_repeat Simple_repeat 2 37 0 3 705 234 128 0 0 chr11 15771386 15771425 -106072431 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 3 705 28 71 0 0 chr11 15771724 15771780 -106072076 + AT_rich Low_complexity Low_complexity 1 56 0 3 705 2303 98 3 6 chr11 15772114 15772444 -106071412 + Lx LINE L1 6313 6641 -13 3 705 227 333 51 26 chr11 15772603 15772720 -106071136 - MER31B LTR ERV1 -345 121 2 3 705 352 130 26 13 chr11 15773403 15773481 -106070375 - Lx2A LINE L1 -6 7002 6924 3 705 1664 149 215 14 chr11 15773481 15773848 -106070008 - Lx2A LINE L1 -40 6968 6528 3 705 253 291 35 0 chr11 15774002 15774088 -106069768 - MIR SINE MIR -108 154 66 3 705 189 0 0 0 chr11 15774408 15774429 -106069427 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 705 26 30 0 0 chr11 15775223 15775256 -106068600 + AT_rich Low_complexity Low_complexity 1 33 0 3 705 2001 306 109 32 chr11 15775426 15776518 -106067338 - Lx8 LINE L1 -230 7243 6068 3 705 236 274 16 31 chr11 15776830 15776894 -106066962 + ID SINE ID 24 86 -138 3 705 299 141 0 34 chr11 15778090 15778178 -106065678 + A-rich Low_complexity Low_complexity 1 85 0 3 705 2251 130 22 79 chr11 15778443 15778860 -106064996 - RLTR9C LTR ERVK 0 393 1 3 705 495 97 0 0 chr11 15778865 15778937 -106064919 - ETnERV2-int LTR ERVK -4 7402 7331 3 705 1058 208 25 18 chr11 15779125 15779449 -106064407 - ETnERV2-int LTR ERVK -983 6423 6149 3 705 14308 109 7 7 chr11 15779449 15781611 -106062245 - L1_Mm LINE L1 -366 5517 3355 3 705 234 62 0 0 chr11 15782366 15782398 -106061458 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 705 3095 186 55 13 chr11 15782422 15783036 -106060820 + Lx2B LINE L1 6357 6996 -4 3 705 22 0 0 0 chr11 15783319 15783341 -106060515 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 1293 286 12 9 chr11 15783345 15783680 -106060176 - Lx6 LINE L1 -35 7425 7090 3 705 2990 18 0 0 chr11 15783680 15784017 -106059839 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 705 4469 52 23 0 chr11 15784017 15784588 -106059268 + IAPEz-int LTR ERVK 8 591 -5890 3 705 442 66 0 32 chr11 15784620 15784683 -106059173 + IAPEz-int LTR ERVK 1359 1419 -5062 3 705 1821 119 4 4 chr11 15784672 15784934 -106058922 + IAPEz-int LTR ERVK 2236 2497 -5183 3 705 932 73 24 0 chr11 15784931 15785054 -106058802 + IAPEz-int LTR ERVK 4785 4910 -2770 3 705 467 66 0 0 chr11 15785054 15785115 -106058741 + IAPEz-int LTR ERVK 3525 3585 -2896 3 705 21174 12 2 0 chr11 15785107 15787467 -106056389 + IAPEz-int LTR ERVK 4117 6481 0 3 705 2961 15 3 0 chr11 15787467 15787803 -106056053 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 705 898 253 110 68 chr11 15787803 15788202 -106055654 - Lx6 LINE L1 -365 7095 6680 3 705 23 54 0 0 chr11 15789107 15789144 -106054712 + AT_rich Low_complexity Low_complexity 1 37 0 3 705 22 0 0 0 chr11 15789452 15789474 -106054382 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 26 50 0 0 chr11 15789499 15789539 -106054317 + AT_rich Low_complexity Low_complexity 1 40 0 3 705 27 49 0 0 chr11 15789708 15789749 -106054107 + AT_rich Low_complexity Low_complexity 1 41 0 3 705 192 200 0 0 chr11 15790486 15790526 -106053330 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 3 705 455 355 102 33 chr11 15790736 15791097 -106052759 + MLT1C LTR MaLR 16 401 -66 3 705 225 94 0 0 chr11 15791098 15791130 -106052726 + (A)n Simple_repeat Simple_repeat 1 32 0 3 705 400 296 52 41 chr11 15791977 15792171 -106051685 + B3A SINE B2 1 196 -2 3 705 309 51 0 0 chr11 15793212 15793251 -106050605 + (A)n Simple_repeat Simple_repeat 1 39 0 3 705 523 318 28 6 chr11 15793809 15793986 -106049870 - B3A SINE B2 -13 185 5 3 705 322 333 0 0 chr11 15794761 15794836 -106049020 + ID2 SINE ID 2 76 -7 3 705 686 103 40 0 chr11 15795081 15795207 -106048649 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 3 705 3346 147 89 13 chr11 15795216 15795823 -106048033 + RLTR33 LTR ERVK 26 678 0 3 705 1802 46 8 32 chr11 15796020 15796267 -106047589 - L1Md_F3 LINE L1 0 6584 6344 3 705 3898 36 4 0 chr11 15796267 15796735 -106047121 + L1Md_F3 LINE L1 5856 6325 -257 3 705 337 170 9 19 chr11 15797049 15797157 -106046699 + T-rich Low_complexity Low_complexity 4 110 0 3 705 510 337 19 3 chr11 15797290 15797614 -106046242 + L1M2 LINE L1 2689 3017 -3126 3 705 299 297 14 95 chr11 15797804 15798098 -106045758 + L1M2 LINE L1 3048 3317 -2826 3 705 214 171 0 0 chr11 15798099 15798134 -106045722 + GA-rich Low_complexity Low_complexity 2 36 0 3 705 933 292 103 55 chr11 15798174 15798522 -106045334 + ORR1D2 LTR MaLR 6 370 0 3 705 273 243 81 0 chr11 15798845 15798919 -106044937 + MTEb LTR MaLR 300 379 0 3 705 28 71 0 0 chr11 15799975 15800031 -106043825 + AT_rich Low_complexity Low_complexity 1 56 0 3 705 198 0 0 0 chr11 15800412 15800434 -106043422 + (A)n Simple_repeat Simple_repeat 1 22 0 3 705 1082 82 7 0 chr11 15801108 15801254 -106042602 + B1_Mus1 SINE Alu 2 148 0 3 705 221 0 35 0 chr11 15801254 15801283 -106042573 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 3 705 306 327 42 69 chr11 15801621 15801838 -106042018 + Lx8 LINE L1 7246 7456 -17 3 705 21 0 0 0 chr11 15801853 15801874 -106041982 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 1659 186 29 38 chr11 15802370 15802711 -106041145 + ORR1A1 LTR MaLR 1 338 -8 3 705 201 108 0 0 chr11 15803717 15803754 -106040102 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 705 51 0 0 0 chr11 15803896 15803947 -106039909 + AT_rich Low_complexity Low_complexity 1 51 0 3 705 282 194 0 0 chr11 15804920 15804992 -106038864 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 705 432 0 0 0 chr11 15804992 15805040 -106038816 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 705 2860 35 38 49 chr11 15806490 15806915 -106036941 - RLTR10C LTR ERVK -35 401 1 3 705 201 182 23 0 chr11 15807470 15807514 -106036342 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 3 705 584 33 44 0 chr11 15807829 15807920 -106035936 + L1Md_F3 LINE L1 6489 6583 -1 3 705 1009 96 14 0 chr11 15808023 15808169 -106035687 + B1_Mus1 SINE Alu 1 148 0 3 705 302 43 65 0 chr11 15808169 15808215 -106035641 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 3 705 452 364 20 69 chr11 15808909 15808973 -106034883 - B4A SINE B4 0 292 235 3 705 525 335 9 14 chr11 15808973 15809185 -106034671 - B3 SINE B2 -3 213 3 3 705 452 340 57 85 chr11 15809185 15809403 -106034453 - B4A SINE B4 -58 234 18 3 705 23 0 0 0 chr11 15809413 15809436 -106034420 + AT_rich Low_complexity Low_complexity 1 23 0 3 705 345 125 0 0 chr11 15810653 15810709 -106033147 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 705 3123 78 2 14 chr11 15811036 15811464 -106032392 - L1_Mus2 LINE L1 0 6566 6144 3 705 960 56 0 0 chr11 15811520 15811645 -106032211 + B1_Mus1 SINE Alu 23 147 -1 3 705 243 79 0 0 chr11 15811646 15811684 -106032172 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 3 705 36 53 0 0 chr11 15811942 15811999 -106031857 + AT_rich Low_complexity Low_complexity 1 57 0 3 705 195 42 0 0 chr11 15812088 15812112 -106031744 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 705 588 328 5 47 chr11 15812112 15812304 -106031552 - B3A SINE B2 0 198 15 3 705 2223 301 99 72 chr11 15812313 15812959 -106030897 - Lx8 LINE L1 -1 7472 6797 3 705 450 0 0 0 chr11 15812959 15813009 -106030847 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 3 705 2223 301 99 72 chr11 15813009 15813610 -106030246 - Lx8 LINE L1 -677 6796 6193 3 705 27 0 0 0 chr11 15813786 15813813 -106030043 + AT_rich Low_complexity Low_complexity 1 27 0 3 705 413 349 31 29 chr11 15813861 15814407 -106029449 - Lx8 LINE L1 -540 5616 5035 3 705 248 318 19 45 chr11 15814427 15814582 -106029274 - Lx8 LINE L1 -1336 4544 4394 3 705 351 0 0 0 chr11 15814619 15814658 -106029198 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 705 8248 109 21 31 chr11 15814777 15816084 -106027772 - Lx3_Mus LINE L1 -11 6998 5705 3 705 22 0 0 0 chr11 15816728 15816750 -106027106 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 542 283 55 15 chr11 15817835 15818036 -106025820 - B3 SINE B2 -7 209 1 3 705 6616 144 9 37 chr11 15818819 15819011 -106024845 + Lx3_Mus LINE L1 5877 6068 -941 3 705 6927 116 4 21 chr11 15819011 15820052 -106023804 + RLTR13D2 LTR ERVK 1 1023 0 3 705 6616 144 9 37 chr11 15820052 15821013 -106022843 + Lx3_Mus LINE L1 6069 6997 -12 3 705 1144 107 18 0 chr11 15824570 15824739 -106019117 - B2_Mm1t SINE B2 -12 181 10 3 705 273 306 12 12 chr11 15824663 15824749 -106019107 - RSINE1 SINE B4 -79 86 1 3 705 26 82 0 0 chr11 15824749 15824810 -106019046 + AT_rich Low_complexity Low_complexity 1 61 0 3 705 394 215 41 16 chr11 15824863 15824986 -106018870 - L1M3 LINE L1 -1149 4991 4866 3 705 314 310 69 15 chr11 15825008 15825211 -106018645 - L1M3 LINE L1 -1724 4419 4206 3 705 608 262 6 67 chr11 15825700 15825880 -106017976 + ORR1C2 LTR MaLR 27 195 -189 4 705 523 48 128 0 chr11 15825886 15826011 -106017845 + (TCTCTG)n Simple_repeat Simple_repeat 2 142 0 4 705 238 257 134 62 chr11 15826012 15826124 -106017732 + ORR1C2 LTR MaLR 172 291 -93 4 705 689 293 30 37 chr11 15826167 15826468 -106017388 + Lx9 LINE L1 6906 7343 -301 4 705 281 259 0 0 chr11 15826522 15826576 -106017280 + B3 SINE B2 77 130 -86 4 705 2932 53 0 0 chr11 15826652 15827013 -106016843 + L1Md_F2 LINE L1 5225 5585 -298 4 705 6760 69 68 5 chr11 15827014 15827949 -106015907 + L1Md_F2 LINE L1 5587 6580 -2 4 705 404 280 184 0 chr11 15827971 15828202 -106015654 + Lx9 LINE L1 7352 7624 -20 4 705 15609 126 13 13 chr11 15828204 15829690 -106014166 - L1_Mus4 LINE L1 0 6636 5151 4 705 4205 130 119 81 chr11 15829690 15830558 -106013298 + RMER17A2 LTR ERVK 3 903 -3 4 705 15609 160 8 15 chr11 15830558 15832617 -106011239 - L1_Mus4 LINE L1 -733 5150 3121 4 705 303 240 90 0 chr11 15832622 15832722 -106011134 - RLTR42-int LTR ERVK -1177 4345 4237 4 705 5082 201 48 16 chr11 15832731 15833137 -106010719 + Lx5 LINE L1 1644 2039 -3838 4 705 507 33 0 0 chr11 15833137 15833198 -106010658 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 705 5082 201 48 16 chr11 15833198 15834018 -106009838 + Lx5 LINE L1 2040 2909 -2968 4 705 5095 223 65 6 chr11 15834014 15835259 -106008597 + Lx5 LINE L1 5323 6635 -415 4 705 225 0 0 0 chr11 15835259 15835284 -106008572 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 705 5095 235 58 9 chr11 15835284 15835529 -106008327 + Lx5 LINE L1 6636 6884 -166 4 705 1084 143 148 0 chr11 15835530 15835630 -106008226 + MERVL-int LTR ERVL 1251 1350 -4135 4 705 215 31 31 0 chr11 15835630 15835662 -106008194 + (TTAAA)n Simple_repeat Simple_repeat 4 36 0 4 705 1084 143 148 0 chr11 15835662 15835757 -106008099 + MERVL-int LTR ERVL 1351 1473 -4012 4 705 238 271 0 41 chr11 15835757 15835830 -106008026 - MTA_Mm LTR MaLR -75 321 252 4 705 1401 94 0 0 chr11 15835813 15836005 -106007851 + MTB LTR MaLR 209 400 0 4 705 602 251 11 60 chr11 15836005 15836187 -106007669 + Lx5 LINE L1 6873 7045 -5 4 705 1934 213 12 28 chr11 15836251 15836676 -106007180 - RLTR42-int LTR ERVK -2547 2975 2558 4 705 1842 216 25 30 chr11 15836730 15837170 -106006686 - RLTR42-int LTR ERVK -2963 2559 2122 4 705 28 29 0 0 chr11 15837416 15837451 -106006405 + AT_rich Low_complexity Low_complexity 1 35 0 4 705 732 65 19 0 chr11 15837714 15837821 -106006035 + L1Md_F2 LINE L1 6461 6569 -13 4 705 8618 19 0 0 chr11 15837928 15839269 -106004587 - L1Md_A LINE L1 -1 6581 5241 4 705 40351 14 3 6 chr11 15839270 15845459 -105998397 - L1Md_A LINE L1 0 6582 420 4 705 1268 233 80 76 chr11 15845585 15846058 -105997798 - RLTR42-int LTR ERVK -4123 1399 925 4 705 1088 73 0 0 chr11 15846199 15846335 -105997521 + B1_Mus1 SINE Alu 1 136 -12 4 705 246 218 0 0 chr11 15847344 15847399 -105996457 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 705 186 288 33 17 chr11 15847668 15847728 -105996128 - L3 LINE CR1 -2305 2184 2124 4 705 36 70 0 0 chr11 15847780 15847851 -105996005 + AT_rich Low_complexity Low_complexity 1 71 0 4 705 21 71 0 0 chr11 15848081 15848123 -105995733 + AT_rich Low_complexity Low_complexity 1 42 0 4 705 5667 187 24 24 chr11 15848284 15849552 -105994304 - Lx5 LINE L1 -613 5264 3996 4 705 3188 186 13 2 chr11 15849554 15850390 -105993466 + Lx5 LINE L1 5269 6121 -929 4 705 3757 67 23 16 chr11 15850392 15850907 -105992949 + LTRIS2 LTR ERV1 46 564 0 4 705 4515 199 34 7 chr11 15850907 15851732 -105992124 + Lx5 LINE L1 6121 6967 -83 4 705 220 196 0 35 chr11 15851736 15851794 -105992062 + A-rich Low_complexity Low_complexity 2 57 0 4 705 1479 38 5 16 chr11 15852438 15852624 -105991232 + B2_Mm1t SINE B2 2 185 -8 4 705 531 251 61 79 chr11 15853004 15853346 -105990510 - Charlie1a DNA MER1_type -116 1339 1004 4 705 443 300 99 37 chr11 15853346 15853619 -105990237 - L1MD1 LINE L1 -39 6203 5914 4 705 669 317 116 64 chr11 15853950 15854547 -105989309 - L1MD1 LINE L1 -818 5328 4701 4 705 243 338 72 24 chr11 15854734 15854943 -105988913 - L1_Rod LINE L1 -6494 678 460 4 705 968 292 47 50 chr11 15856311 15856892 -105986964 - L1M2 LINE L1 -3357 2786 2208 4 88 28129 133 17 38 chr11 15857149 15863633 -105980223 + L1_Mus2 LINE L1 272 6566 0 4 706 513 334 98 24 chr11 15863663 15863972 -105979884 - MTEa LTR MaLR -30 349 3 4 706 423 337 126 53 chr11 15864211 15864678 -105979178 - L1M3b LINE L1 -5775 506 6 4 706 453 76 0 0 chr11 15865536 15865602 -105978254 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 4 706 4235 237 77 26 chr11 15865619 15866781 -105977075 - Lx5 LINE L1 -45 7005 5785 4 706 7572 168 66 8 chr11 15866781 15867363 -105976493 - Lx5 LINE L1 -289 5588 4976 4 706 444 37 0 0 chr11 15867363 15867417 -105976439 + (TTG)n Simple_repeat Simple_repeat 1 54 0 4 706 7572 168 66 8 chr11 15867417 15867612 -105976244 - Lx5 LINE L1 -902 4975 4781 4 706 1065 93 0 0 chr11 15867612 15867763 -105976093 + (CTATT)n Simple_repeat Simple_repeat 3 153 0 4 706 7572 168 66 8 chr11 15867763 15868508 -105975348 - Lx5 LINE L1 -1097 4780 3978 4 706 1047 174 43 0 chr11 15868511 15868718 -105975138 - Lx5 LINE L1 -3198 2679 2464 4 706 4543 205 29 9 chr11 15869013 15869400 -105974456 - Lx5 LINE L1 -3416 2461 2061 4 706 455 33 0 16 chr11 15869400 15869462 -105974394 + (TAG)n Simple_repeat Simple_repeat 1 61 0 4 706 4543 205 29 9 chr11 15869462 15870141 -105973715 - Lx5 LINE L1 -3817 2060 1374 4 706 690 174 56 66 chr11 15870137 15870334 -105973522 - Lx LINE L1 -1 6653 6459 4 706 341 118 39 0 chr11 15870326 15870377 -105973479 + L1_Mus4 LINE L1 6391 6443 -193 4 706 939 173 94 27 chr11 15870371 15870486 -105973370 - Lx5 LINE L1 -4490 1387 1263 4 706 285 51 0 0 chr11 15870486 15870525 -105973331 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 706 939 169 75 22 chr11 15870525 15870729 -105973127 - Lx5 LINE L1 -5824 1262 1052 4 706 1124 82 0 0 chr11 15870774 15870921 -105972935 + B1_Mus1 SINE Alu 2 148 0 4 706 459 0 0 0 chr11 15870925 15870976 -105972880 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 706 321 219 43 87 chr11 15871060 15871245 -105972611 - Lx5 LINE L1 -6042 1044 868 4 706 420 97 0 0 chr11 15871755 15871817 -105972039 + (TAA)n Simple_repeat Simple_repeat 2 63 0 4 706 27 29 0 0 chr11 15872163 15872197 -105971659 + AT_rich Low_complexity Low_complexity 1 34 0 4 706 588 355 44 0 chr11 15872229 15872432 -105971424 - ID_B1 SINE B4 -5 219 8 4 706 407 241 66 61 chr11 15872456 15872637 -105971219 - L1MB8 LINE L1 -6 6172 5991 4 706 751 325 45 5 chr11 15873033 15873481 -105970375 - L1M4 LINE L1 -1801 4345 3880 4 706 201 217 0 61 chr11 15873671 15873720 -105970136 + T-rich Low_complexity Low_complexity 2 47 0 4 706 251 213 0 0 chr11 15873850 15873911 -105969945 + A-rich Low_complexity Low_complexity 1 61 0 4 706 315 104 0 0 chr11 15874023 15874071 -105969785 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 706 277 363 92 16 chr11 15874071 15874256 -105969600 - MER74A LTR ERVL -225 333 135 4 706 234 244 30 112 chr11 15874260 15874367 -105969489 + RMER19C LTR ERVK 41 216 -395 4 706 180 264 78 65 chr11 15875263 15875340 -105968516 + L2a LINE L2 3264 3341 -85 4 706 2519 130 52 55 chr11 15877363 15877853 -105966003 - RMER16 LTR ERVK 0 533 1 4 706 445 332 62 33 chr11 15878311 15878551 -105965305 - RLTR16 LTR ERVK -258 247 1 4 706 360 266 88 42 chr11 15879625 15879833 -105964023 + L1M3e LINE L1 1888 2132 -4895 4 706 465 261 58 115 chr11 15880070 15880278 -105963578 - B3A SINE B2 -1 197 2 4 706 207 100 0 0 chr11 15882654 15882684 -105961172 + (CATG)n Simple_repeat Simple_repeat 2 31 0 4 706 3268 31 5 10 chr11 15882765 15883161 -105960695 - MTA_Mm LTR MaLR -2 394 1 4 706 1481 236 56 20 chr11 15883383 15883773 -105960083 - RMER13B LTR ERVK 0 908 505 4 706 344 294 115 22 chr11 15884999 15885138 -105958718 - RSINE1 SINE B4 -10 155 4 4 706 226 26 25 50 chr11 15887038 15887078 -105956778 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 706 180 0 0 0 chr11 15887194 15887214 -105956642 + (T)n Simple_repeat Simple_repeat 1 20 0 4 706 1305 250 42 6 chr11 15887333 15887663 -105956193 + Lx9 LINE L1 7052 7393 -251 4 706 4545 217 41 51 chr11 15887663 15887883 -105955973 - RLTR25A LTR ERVK 0 1103 873 4 706 378 0 0 0 chr11 15887883 15887925 -105955931 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 706 4545 217 41 51 chr11 15887925 15888503 -105955353 - RLTR25A LTR ERVK -231 872 319 4 706 1077 92 0 0 chr11 15888503 15888644 -105955212 - B1_Mus1 SINE Alu -6 142 2 4 706 1099 183 28 0 chr11 15888648 15888861 -105954995 - Lx2A1 LINE L1 -5 7003 6785 4 706 4545 217 41 51 chr11 15888861 15889170 -105954686 - RLTR25A LTR ERVK -785 318 1 4 706 408 294 45 11 chr11 15889647 15889919 -105953937 + L1_Rod LINE L1 5083 5385 -758 4 706 360 133 0 0 chr11 15890200 15890260 -105953596 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 706 27 29 0 0 chr11 15890386 15890420 -105953436 + AT_rich Low_complexity Low_complexity 1 34 0 4 706 457 241 77 42 chr11 15891028 15891171 -105952685 + RSINE1 SINE B4 18 165 0 4 706 33 56 0 0 chr11 15891171 15891225 -105952631 + AT_rich Low_complexity Low_complexity 1 54 0 4 706 431 280 96 108 chr11 15894707 15895143 -105948713 + L1_Mur3 LINE L1 846 1276 -6452 4 706 3748 241 12 20 chr11 15895130 15895977 -105947879 + Lx5 LINE L1 6211 7050 0 4 706 960 258 37 61 chr11 15896001 15896459 -105947397 + L1_Mur3 LINE L1 1256 1702 -4178 4 706 960 173 0 0 chr11 15896489 15896668 -105947188 + GA-rich Low_complexity Low_complexity 1 179 0 4 706 3404 241 92 23 chr11 15896668 15897833 -105946023 + L1_Mur3 LINE L1 1693 2937 -2943 4 706 609 298 24 16 chr11 15897835 15898081 -105945775 + Lx7 LINE L1 5772 6019 -1677 4 706 2019 232 108 25 chr11 15898093 15898385 -105945471 + RMER12 LTR ERVK 1 320 -1002 4 706 1149 81 0 0 chr11 15898385 15898533 -105945323 + B1_Mus1 SINE Alu 1 148 0 4 706 2019 232 108 25 chr11 15898533 15898872 -105944984 + RMER12 LTR ERVK 321 684 -638 4 706 6448 132 31 29 chr11 15898881 15900301 -105943555 - Lx LINE L1 -8 6646 5241 4 706 287 25 25 0 chr11 15900301 15900341 -105943515 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 4 706 4179 163 7 73 chr11 15900341 15900509 -105943347 - Lx LINE L1 -643 5240 5073 4 706 1003 248 211 43 chr11 15900510 15900600 -105943256 + RMER12 LTR ERVK 682 768 -554 4 706 489 34 0 0 chr11 15900600 15900659 -105943197 + (TCCA)n Simple_repeat Simple_repeat 1 59 0 4 706 1003 248 211 43 chr11 15900659 15900792 -105943064 + RMER12 LTR ERVK 769 914 -408 4 706 387 0 0 0 chr11 15900792 15900835 -105943021 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 706 1003 242 119 68 chr11 15900835 15901217 -105942639 + RMER12 LTR ERVK 915 1167 -155 4 706 384 244 109 0 chr11 15901342 15901461 -105942395 + Lx7 LINE L1 6140 6271 -1425 4 706 289 330 11 22 chr11 15901482 15901572 -105942284 - B4A SINE B4 -200 92 4 4 706 1082 99 6 0 chr11 15901754 15901916 -105941940 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 4 706 352 305 186 32 chr11 15902067 15902406 -105941450 - Charlie1a DNA MER1_type -950 505 115 4 706 33659 75 9 6 chr11 15903444 15909569 -105934287 - L1Md_F2 LINE L1 0 6582 438 4 706 46 33 0 0 chr11 15909739 15909799 -105934057 + AT_rich Low_complexity Low_complexity 1 60 0 4 706 352 283 108 41 chr11 15909839 15910108 -105933748 - L1M5 LINE L1 -1695 4451 4165 4 706 325 274 160 43 chr11 15910175 15910431 -105933425 - Charlie2b DNA MER1_type -43 2739 2454 4 706 364 230 70 78 chr11 15910437 15910583 -105933273 - MTE2a LTR MaLR 0 419 267 4 706 22 0 0 0 chr11 15910917 15910939 -105932917 + AT_rich Low_complexity Low_complexity 1 22 0 4 706 3272 182 65 37 chr11 15911106 15911802 -105932054 - RMER6D LTR ERVK -4 716 2 4 706 1614 149 10 30 chr11 15911825 15912123 -105931733 - Lx3C LINE L1 -958 6018 5727 4 706 291 159 109 16 chr11 15912137 15912201 -105931655 - MTC LTR MaLR -31 390 321 4 706 5081 118 32 11 chr11 15912206 15912998 -105930858 + Lx3C LINE L1 6167 6974 -2 4 706 678 80 0 42 chr11 15913011 15913129 -105930727 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 4 706 276 83 0 0 chr11 15913129 15913165 -105930691 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 706 31 0 0 0 chr11 15914279 15914310 -105929546 + AT_rich Low_complexity Low_complexity 1 31 0 5 706 21 0 0 0 chr11 15914383 15914404 -105929452 + AT_rich Low_complexity Low_complexity 1 21 0 5 706 1723 200 72 37 chr11 15914757 15915188 -105928668 + RLTR41 LTR ERV1 1 446 0 5 706 22 0 0 0 chr11 15915199 15915221 -105928635 + AT_rich Low_complexity Low_complexity 1 22 0 5 706 797 294 132 25 chr11 15915796 15916387 -105927469 - L1MA6 LINE L1 -3 6297 5644 5 706 814 308 139 56 chr11 15916383 15916885 -105926971 - Lx8 LINE L1 -697 6776 6233 5 706 534 301 52 4 chr11 15917384 15917634 -105926222 - L1MA6 LINE L1 -695 5605 5344 5 706 271 212 14 175 chr11 15917775 15917918 -105925938 - RMER1C Other Other -116 1226 1107 5 706 518 271 85 7 chr11 15917810 15917951 -105925905 - Lx8 LINE L1 -148 7325 7174 5 706 1214 150 13 45 chr11 15918615 15918839 -105925017 - LTRIS3 LTR ERV1 -3 509 293 5 706 241 203 14 72 chr11 15919082 15919151 -105924705 - MURVY-LTR LTR ERV1 -388 131 67 5 706 473 252 188 73 chr11 15919257 15919587 -105924269 - RLTR9A LTR ERVK 0 368 1 5 706 1593 342 33 7 chr11 15919610 15920220 -105923636 - Lx8 LINE L1 -680 6793 6168 5 706 573 105 146 4 chr11 15920273 15920409 -105923447 + ORR1A1 LTR MaLR 1 137 -190 5 706 34473 74 3 3 chr11 15920417 15925969 -105917887 - L1Md_Gf LINE L1 0 5886 242 5 706 2247 246 56 26 chr11 15925969 15926816 -105917040 - L1Md_F LINE L1 -5411 1108 298 5 706 767 156 70 19 chr11 15926825 15926982 -105916874 - RLTR22_Mur LTR ERVK -15 1833 1669 5 706 2747 136 82 8 chr11 15926987 15927252 -105916604 - Lx5 LINE L1 -1058 5992 5706 5 706 284 0 28 0 chr11 15927252 15927288 -105916568 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 706 2747 178 101 26 chr11 15927288 15927789 -105916067 - Lx5 LINE L1 -172 5705 5174 5 706 3761 34 0 0 chr11 15927799 15928243 -105915613 + L1Md_F2 LINE L1 5142 5585 -298 5 706 8014 54 0 1 chr11 15928244 15929238 -105914618 + L1Md_F2 LINE L1 5587 6579 -3 5 706 756 274 130 34 chr11 15929257 15929418 -105914438 + Lx8 LINE L1 5350 5505 -342 5 706 231 36 0 0 chr11 15929418 15929446 -105914410 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 706 756 274 130 34 chr11 15929446 15929639 -105914217 + Lx8 LINE L1 5506 5738 -109 5 706 263 197 0 0 chr11 15929639 15929700 -105914156 + Lx4A LINE L1 6989 7049 -9 5 706 371 232 33 53 chr11 15929718 15929868 -105913988 + Lx8 LINE L1 5773 5919 -1554 5 706 186 189 0 0 chr11 15929955 15929992 -105913864 + A-rich Low_complexity Low_complexity 2 38 0 5 706 318 98 0 0 chr11 15929987 15930038 -105913818 + (CAGG)n Simple_repeat Simple_repeat 2 52 0 5 706 314 326 45 52 chr11 15930039 15930194 -105913662 + HAL1-3A_ME LINE L1 2284 2437 -421 5 706 315 201 1 0 chr11 15930286 15930359 -105913497 - L1_Rod LINE L1 -429 5451 5353 5 706 294 342 70 54 chr11 15930412 15930857 -105912999 - L1M2 LINE L1 -904 5239 4788 5 706 1689 154 9 59 chr11 15931084 15931423 -105912433 - RLTRETN_Mm LTR ERVK 0 322 1 5 706 3252 110 25 23 chr11 15931423 15931953 -105911903 - MMETn-int LTR ERVK 0 4844 4314 5 706 213 271 51 0 chr11 15932002 15932061 -105911795 + RSINE1 SINE B4 66 127 -38 5 706 261 0 0 0 chr11 15932086 15932115 -105911741 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 706 229 26 26 26 chr11 15933256 15933295 -105910561 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 706 1212 42 0 0 chr11 15933298 15933441 -105910415 - B1_Mus1 SINE Alu -5 143 1 5 706 517 311 114 36 chr11 15933738 15934045 -105909811 - MER44A DNA MER2_type 0 339 9 5 706 233 358 51 22 chr11 15935067 15935204 -105908652 - MER2 DNA MER2_type -204 141 1 5 706 5205 208 65 7 chr11 15935558 15936680 -105907176 + Lx2B LINE L1 5809 6995 -5 5 706 561 243 21 35 chr11 15936786 15936927 -105906929 + Lx8 LINE L1 7189 7327 -146 5 706 515 53 0 13 chr11 15937177 15937253 -105906603 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 706 2257 134 0 0 chr11 15937433 15937792 -105906064 - L1_Mm LINE L1 -1633 4250 3892 5 706 36 40 0 0 chr11 15937913 15937963 -105905893 + AT_rich Low_complexity Low_complexity 1 50 0 5 706 492 128 0 0 chr11 15938541 15938619 -105905237 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 706 6484 93 56 0 chr11 15938708 15939697 -105904159 - L1_Mus2 LINE L1 -2 6564 5528 5 706 4081 31 2 4 chr11 15939697 15940180 -105903676 + LTRIS_Mm LTR ERV1 1 482 0 5 706 6728 76 23 8 chr11 15940180 15940521 -105903335 + MuRRS-int LTR ERV1 1 595 -4095 5 706 458 17 17 0 chr11 15940521 15940580 -105903276 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 706 6728 76 67 11 chr11 15940580 15941383 -105902473 + MuRRS-int LTR ERV1 596 1426 -3264 5 706 2469 44 6 9 chr11 15941377 15941696 -105902160 + MuRRS-int LTR ERV1 1731 2048 -2642 5 706 2437 141 39 2 chr11 15941702 15942191 -105901665 - L1Md_Gf LINE L1 -1642 4241 3667 5 706 3156 114 9 0 chr11 15942202 15942745 -105901111 - MusHAL1 LINE L1 -2180 1173 627 5 706 1029 80 0 0 chr11 15942755 15942892 -105900964 - B1_Mm SINE Alu 0 147 11 5 706 248 211 104 45 chr11 15942795 15942929 -105900927 - ORR1B1-int LTR MaLR -755 754 613 5 706 1131 233 11 0 chr11 15942937 15943225 -105900631 - L1Md_Gf LINE L1 -5519 1208 821 5 706 576 225 26 113 chr11 15943250 15943506 -105900350 - L1VL1 LINE L1 -5981 437 179 5 706 1102 119 34 0 chr11 15943535 15943711 -105900145 - L1_Mus2 LINE L1 -2 6564 6383 5 706 432 87 0 0 chr11 15943867 15943936 -105899920 + MusHAL1 LINE L1 616 684 -2670 5 706 7147 174 7 19 chr11 15943941 15944018 -105899838 + L1_Mus4 LINE L1 4490 4563 -1320 5 706 6330 86 109 9 chr11 15944018 15944948 -105898908 - RLTR13D5 LTR ERVK 0 1023 1 5 706 7147 174 7 19 chr11 15944948 15945133 -105898723 + L1_Mus4 LINE L1 4564 4736 -1147 5 706 258 32 0 0 chr11 15945133 15945164 -105898692 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 706 7147 145 12 9 chr11 15945164 15946884 -105896972 + L1_Mus4 LINE L1 4737 6468 -168 5 706 3171 36 5 3 chr11 15946884 15947274 -105896582 + MTA_Mm LTR MaLR 1 391 -5 5 706 968 131 12 12 chr11 15947276 15947446 -105896410 + L1_Mus3 LINE L1 6463 6632 -6 5 706 24 67 0 0 chr11 15947929 15947974 -105895882 + AT_rich Low_complexity Low_complexity 1 45 0 5 706 3887 143 3 19 chr11 15948102 15948749 -105895107 - Lx2 LINE L1 -1 6996 6360 5 706 2701 33 0 180 chr11 15948749 15949194 -105894662 + RLTR10B2 LTR ERVK 1 365 0 5 706 1241 80 11 6 chr11 15949194 15949371 -105894485 + RLTR10-int LTR ERVK 1 178 -7403 5 706 552 76 44 44 chr11 15949468 15949605 -105894251 + GA-rich Low_complexity Low_complexity 3 139 0 5 706 315 111 0 0 chr11 15949605 15949650 -105894206 + RLTR10-int LTR ERVK 93 137 -6405 5 706 2733 44 0 3 chr11 15949653 15949995 -105893861 + RLTR10-int LTR ERVK 652 992 -995 5 706 454 305 27 27 chr11 15950020 15950413 -105893443 + RLTR10-int LTR ERVK 822 1564 -6017 5 706 1461 100 104 0 chr11 15950425 15950655 -105893201 + RLTR10-int LTR ERVK 5002 5255 -1287 5 706 3935 117 8 10 chr11 15950655 15951346 -105892510 + IAPEY3-int LTR ERVK 6965 7680 0 5 706 3048 44 0 8 chr11 15951346 15951714 -105892142 + RLTR10B2 LTR ERVK 1 365 0 5 706 7926 162 101 3 chr11 15951714 15954026 -105889830 - Lx2 LINE L1 -632 6365 3791 5 706 633 310 53 30 chr11 15954058 15954451 -105889405 - Lx8 LINE L1 -17 7456 7055 5 706 830 311 7 7 chr11 15954604 15954892 -105888964 - Lx8 LINE L1 -623 6850 6563 5 706 1186 266 31 26 chr11 15954948 15955266 -105888590 - Lx9 LINE L1 -616 7028 6627 5 706 3354 190 32 22 chr11 15955266 15955951 -105887905 + RLTR17 LTR ERVK 1 692 0 5 706 1186 249 29 29 chr11 15955951 15956032 -105887824 - Lx9 LINE L1 -883 6761 6681 5 706 584 124 0 9 chr11 15956036 15956142 -105887714 + (TA)n Simple_repeat Simple_repeat 2 106 0 5 706 195 42 0 0 chr11 15956143 15956167 -105887689 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 706 2939 180 23 26 chr11 15956193 15957436 -105886420 + L1Md_F LINE L1 462 1660 -2157 5 706 1768 141 0 0 chr11 15957431 15957730 -105886126 + L1_Mur1 LINE L1 3496 3794 -2092 5 706 6644 107 12 1 chr11 15957701 15958933 -105884923 + L1_Mus2 LINE L1 5307 6566 0 5 706 29 47 0 0 chr11 15959017 15959060 -105884796 + AT_rich Low_complexity Low_complexity 1 43 0 5 706 881 125 44 0 chr11 15959991 15960127 -105883729 - B1_Mus1 SINE Alu -6 142 1 5 706 25 83 0 0 chr11 15960265 15960325 -105883531 + AT_rich Low_complexity Low_complexity 1 60 0 5 706 414 238 78 19 chr11 15960607 15960761 -105883095 + L1_Mur2 LINE L1 138 300 -6412 5 706 1604 169 32 14 chr11 15960815 15961163 -105882693 + L1_Mur2 LINE L1 460 813 -5899 5 706 3165 179 58 4 chr11 15961163 15962145 -105881711 + Lx5 LINE L1 375 1468 -4409 5 706 16201 159 63 35 chr11 15962146 15963608 -105880248 + Lx5 LINE L1 2133 3710 -2167 5 706 1581 32 0 21 chr11 15963608 15963799 -105880057 + B2_Mm1t SINE B2 2 188 -5 5 706 16201 159 63 35 chr11 15963799 15965807 -105878049 + Lx5 LINE L1 3711 5688 -189 5 706 261 0 0 0 chr11 15965807 15965836 -105878020 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 706 16201 208 65 10 chr11 15965836 15967101 -105876755 + Lx5 LINE L1 5689 7038 -12 5 706 4976 200 36 10 chr11 15967866 15968934 -105874922 + Lx4B LINE L1 5959 7054 -4 5 706 22 0 0 0 chr11 15969829 15969851 -105874005 + AT_rich Low_complexity Low_complexity 1 22 0 5 706 486 0 0 0 chr11 15970181 15970235 -105873621 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 5 706 34532 49 0 16 chr11 15971197 15976479 -105867377 + L1Md_A LINE L1 389 5586 -297 5 706 8343 35 2 0 chr11 15976479 15977471 -105866385 + L1Md_A LINE L1 5587 6580 -2 5 706 396 0 0 0 chr11 15977589 15977633 -105866223 + (T)n Simple_repeat Simple_repeat 1 44 0 5 706 2233 245 67 19 chr11 15978372 15978529 -105865327 - Lx9 LINE L1 -6 7638 7466 5 706 1045 81 7 0 chr11 15978529 15978665 -105865191 + B1_Mus1 SINE Alu 3 139 -9 5 706 2233 245 67 19 chr11 15978665 15979210 -105864646 - Lx9 LINE L1 -179 7465 6902 5 706 21 0 0 0 chr11 15979233 15979254 -105864602 + AT_rich Low_complexity Low_complexity 1 21 0 5 706 777 93 0 0 chr11 15979325 15979454 -105864402 + (TC)n Simple_repeat Simple_repeat 1 129 0 5 706 180 0 0 0 chr11 15979454 15979473 -105864383 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 706 1741 296 69 22 chr11 15979706 15980462 -105863394 - Lx9 LINE L1 -497 7147 6357 5 706 1723 197 14 98 chr11 15981785 15981964 -105861892 + ORR1C2 LTR MaLR 3 145 -239 5 706 4005 99 31 15 chr11 15981964 15982280 -105861576 - L1_Mus4 LINE L1 -4 6632 6315 5 706 2870 91 5 22 chr11 15982280 15982687 -105861169 - MTB LTR MaLR 0 400 1 5 706 4005 99 31 15 chr11 15982687 15982983 -105860873 - L1_Mus4 LINE L1 -322 6314 6010 5 706 1723 197 14 98 chr11 15982983 15983220 -105860636 + ORR1C2 LTR MaLR 146 384 0 5 706 2635 140 51 30 chr11 15983334 15983812 -105860044 - RMER16 LTR ERVK 0 533 1 5 706 228 281 23 58 chr11 15984640 15984727 -105859129 - MER5A DNA MER1_type -74 115 32 5 706 5280 161 10 12 chr11 15985706 15986628 -105857228 - Lx2 LINE L1 -13 6984 6065 5 706 24 53 0 0 chr11 15987551 15987589 -105856267 + AT_rich Low_complexity Low_complexity 1 38 0 5 706 21 36 0 0 chr11 15988170 15988198 -105855658 + AT_rich Low_complexity Low_complexity 1 28 0 5 706 1193 62 0 0 chr11 15988287 15988433 -105855423 + B1_Mm SINE Alu 2 147 0 5 706 265 301 84 0 chr11 15990259 15990342 -105853514 - MER92C LTR ERV1 -462 92 3 5 706 21 36 0 0 chr11 15990600 15990628 -105853228 + AT_rich Low_complexity Low_complexity 1 28 0 5 707 1334 62 45 40 chr11 15992055 15992255 -105851601 - L1Md_F2 LINE L1 -9 6573 6373 5 707 2872 191 5 3 chr11 15992395 15992998 -105850858 - Lx2 LINE L1 -407 5470 4867 5 707 6553 120 8 11 chr11 15992996 15993738 -105850118 + Lx2 LINE L1 5476 6216 -781 5 707 3118 56 0 10 chr11 15993738 15994138 -105849718 - MTA_Mm LTR MaLR 0 396 1 6 707 6553 115 9 12 chr11 15994138 15994557 -105849299 + Lx2 LINE L1 6217 6634 -363 5 707 1303 162 5 5 chr11 15994557 15994780 -105849076 + Lx2 LINE L1 6775 6997 0 5 707 544 278 7 50 chr11 15994784 15994924 -105848932 + MTD LTR MaLR 68 201 -218 6 707 5621 66 18 86 chr11 15994927 15995903 -105847953 + L1_Mur1 LINE L1 3833 4742 -1144 6 707 25576 49 1 20 chr11 15995906 16000000 -105843856 + L1Md_F LINE L1 478 4488 -1395 6 707 9433 25 0 0 chr11 16000000 16001098 -105842758 + L1Md_A LINE L1 4489 5586 -297 1 707 8442 31 0 0 chr11 16001098 16002094 -105841762 + L1Md_A LINE L1 5587 6582 0 1 707 1446 129 6 7 chr11 16002094 16002354 -105841502 + L1_Mur1 LINE L1 4740 5015 -1128 2 707 315 211 0 0 chr11 16002544 16002596 -105841260 + Lx6 LINE L1 6929 6980 -480 3 707 1004 104 5 0 chr11 16002617 16002838 -105841018 + (GA)n Simple_repeat Simple_repeat 1 221 0 4 707 210 45 0 64 chr11 16003042 16003089 -105840767 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 5 707 307 283 245 48 chr11 16004097 16004387 -105839469 - L1MC1 LINE L1 -127 6206 5860 6 707 3192 202 32 21 chr11 16004607 16005265 -105838591 + Lx5 LINE L1 5823 6487 -563 7 707 2574 219 64 88 chr11 16005276 16006024 -105837832 + RMER13B LTR ERVK 5 734 -174 8 707 2165 219 65 70 chr11 16006052 16006384 -105837472 + Lx5 LINE L1 6482 6820 -230 7 707 189 0 0 0 chr11 16006384 16006405 -105837451 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 9 707 2165 219 65 70 chr11 16006405 16006641 -105837215 + Lx5 LINE L1 6821 7047 -3 7 707 278 244 54 0 chr11 16006645 16006761 -105837095 - L1MC1 LINE L1 -2377 5618 5495 6 707 360 0 0 0 chr11 16008060 16008100 -105835756 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 707 351 0 0 0 chr11 16008120 16008159 -105835697 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 707 556 294 158 42 chr11 16008159 16008418 -105835438 - MT2A LTR ERVL -102 431 143 1 707 2131 153 7 62 chr11 16008418 16008823 -105835033 + RLTR9A2 LTR ERVK 1 383 0 1 707 227 109 65 0 chr11 16009115 16009161 -105834695 + A-rich Low_complexity Low_complexity 1 49 0 1 707 8656 205 67 87 chr11 16009195 16010039 -105833817 + RMER16-int LTR ERVK 1059 1882 -5524 1 707 592 263 79 70 chr11 16010039 16010395 -105833461 - RLTR10D LTR ERVK 0 359 1 1 707 10760 186 61 67 chr11 16010395 16012487 -105831369 + RMER16-int LTR ERVK 1829 3930 -3476 1 707 750 78 0 0 chr11 16012487 16012589 -105831267 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 707 10760 166 55 46 chr11 16012589 16013886 -105829970 + RMER16-int LTR ERVK 2873 4175 -1231 1 707 743 272 25 99 chr11 16013894 16014249 -105829607 + ETnERV2-int LTR ERVK 6097 6425 -981 1 707 267 163 0 0 chr11 16014460 16014503 -105829353 + ETnERV2-int LTR ERVK 7335 7377 -29 1 707 2267 130 12 60 chr11 16014531 16014933 -105828923 + RLTR9A2 LTR ERVK 1 383 0 1 707 242 300 25 12 chr11 16015517 16015598 -105828258 - MTE-int LTR MaLR -27 1553 1472 1 707 197 0 71 0 chr11 16015601 16015629 -105828227 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2 707 1039 23 0 0 chr11 16015629 16015758 -105828098 - B1_Mm SINE Alu -2 145 17 2 707 643 281 58 81 chr11 16015754 16016098 -105827758 - MTE-int LTR MaLR -108 1472 822 1 707 475 361 29 20 chr11 16016078 16016324 -105827532 - MTE-int LTR MaLR -572 1008 761 1 707 311 346 113 19 chr11 16016489 16016676 -105827180 + B3A SINE B2 4 203 -13 2 707 342 268 12 12 chr11 16016690 16016773 -105827083 + HAL1-3A_ME LINE L1 1976 2058 -800 2 707 33 43 0 0 chr11 16017501 16017548 -105826308 + AT_rich Low_complexity Low_complexity 1 47 0 2 707 4180 212 25 15 chr11 16017572 16018524 -105825332 - Lx3C LINE L1 -98 6878 5917 2 707 1621 173 27 0 chr11 16018524 16018819 -105825037 + RLTR31A_Mm LTR ERVK 1 303 -281 2 707 736 168 30 61 chr11 16018819 16019016 -105824840 - RMER3D-int LTR ERVK -22 2820 2630 2 707 982 214 87 56 chr11 16019090 16019574 -105824282 + RMER3D-int LTR ERVK 13 851 -1991 2 707 987 192 38 30 chr11 16019590 16019890 -105823966 + RMER3D-int LTR ERVK 1008 1264 -1578 2 707 4662 189 101 68 chr11 16019882 16021298 -105822558 + RMER3D-int LTR ERVK 1378 2840 -2 2 707 1901 212 85 43 chr11 16021300 16021792 -105822064 + RLTR31A_Mm LTR ERVK 1 513 -71 2 707 2037 139 3 0 chr11 16021806 16022108 -105821748 - Lx3C LINE L1 -1054 5922 5620 2 707 257 184 50 51 chr11 16022144 16022240 -105821616 - MLT1D LTR MaLR -19 486 413 3 707 215 247 11 43 chr11 16022654 16022747 -105821109 + A-rich Low_complexity Low_complexity 3 92 0 3 707 323 326 101 13 chr11 16022760 16022909 -105820947 - MLT1D LTR MaLR -134 371 210 3 707 246 116 0 0 chr11 16022938 16022981 -105820875 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 707 29 28 0 0 chr11 16024270 16024306 -105819550 + AT_rich Low_complexity Low_complexity 1 36 0 3 707 200 270 0 39 chr11 16025623 16025700 -105818156 + T-rich Low_complexity Low_complexity 5 78 0 3 707 28 48 0 0 chr11 16025915 16025957 -105817899 + AT_rich Low_complexity Low_complexity 1 42 0 3 707 2221 92 24 3 chr11 16026639 16026976 -105816880 - L1_Mur1 LINE L1 -559 5327 4984 3 707 395 177 134 12 chr11 16026974 16027099 -105816757 + Lx3B LINE L1 6858 7009 0 3 707 1188 300 105 43 chr11 16027204 16027929 -105815927 + L1MA9 LINE L1 5465 6234 -78 3 707 241 207 0 17 chr11 16028058 16028117 -105815739 + L1MA9 LINE L1 6238 6295 -17 3 707 30 59 0 0 chr11 16028339 16028390 -105815466 + AT_rich Low_complexity Low_complexity 1 51 0 3 707 473 273 28 35 chr11 16028400 16028544 -105815312 - RSINE1 SINE B4 0 165 23 4 707 37 69 0 0 chr11 16028562 16028634 -105815222 + AT_rich Low_complexity Low_complexity 1 72 0 4 707 2069 256 20 98 chr11 16028636 16029286 -105814570 - RMER19C LTR ERVK 0 611 13 4 707 207 250 62 0 chr11 16029287 16029367 -105814489 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 707 714 280 65 117 chr11 16029397 16029854 -105814002 - MT2B LTR ERVL -24 577 11 4 707 43 20 0 0 chr11 16030923 16030973 -105812883 + AT_rich Low_complexity Low_complexity 1 50 0 4 707 506 340 10 24 chr11 16030990 16031198 -105812658 + Lx8 LINE L1 6230 6434 -1039 4 707 329 71 316 70 chr11 16031200 16031314 -105812542 - B2_Mm2 SINE B2 -7 188 47 4 707 1203 80 12 0 chr11 16031327 16031490 -105812366 - B2_Mm1t SINE B2 -14 179 15 4 707 1866 315 91 29 chr11 16031496 16032231 -105811625 + Lx8 LINE L1 6455 7235 -238 4 707 812 272 14 118 chr11 16032231 16032510 -105811346 + MTE2a LTR MaLR 13 262 -117 4 707 1022 236 162 83 chr11 16032538 16032889 -105810967 - ORR1C2 LTR MaLR 0 384 6 5 707 279 0 0 0 chr11 16032952 16032983 -105810873 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 707 1817 231 74 5 chr11 16032984 16033418 -105810438 - ORR1C2-int LTR MaLR -906 464 1 5 707 825 228 96 20 chr11 16033418 16033615 -105810241 - ORR1C2 LTR MaLR 0 384 173 5 707 299 74 0 36 chr11 16033615 16033671 -105810185 + (CAGAGA)n Simple_repeat Simple_repeat 1 54 0 5 707 556 258 113 4 chr11 16033675 16033918 -105809938 - ORR1C2 LTR MaLR -120 258 1 5 707 335 236 34 0 chr11 16033926 16034015 -105809841 + MTE2a LTR MaLR 288 379 0 4 707 201 229 0 0 chr11 16034676 16034711 -105809145 + polypurine Low_complexity Low_complexity 3 37 0 5 707 552 240 15 70 chr11 16034889 16035103 -105808753 - Lx3C LINE L1 -4 6972 6729 5 707 272 238 32 0 chr11 16035225 16035288 -105808568 + CT-rich Low_complexity Low_complexity 2 66 0 5 707 627 14 0 0 chr11 16035306 16035378 -105808478 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 707 3803 180 31 37 chr11 16035461 16036241 -105807615 + RMER12 LTR ERVK 8 782 -540 5 707 354 23 0 0 chr11 16036268 16036311 -105807545 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 707 2769 197 32 42 chr11 16036344 16036775 -105807081 + RLTR20B2 LTR ERVK 1 441 -119 6 707 759 116 31 0 chr11 16036775 16036904 -105806952 + L1_Mus4 LINE L1 6496 6628 -8 6 707 2769 197 32 42 chr11 16036904 16036939 -105806917 + RLTR20B2 LTR ERVK 442 464 -96 6 707 216 67 0 0 chr11 16036939 16036969 -105806887 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 707 2769 197 32 42 chr11 16036969 16037067 -105806789 + RLTR20B2 LTR ERVK 465 560 0 6 707 447 52 0 0 chr11 16037069 16037127 -105806729 + (TATG)n Simple_repeat Simple_repeat 1 58 0 6 707 615 51 0 0 chr11 16037174 16037253 -105806603 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 707 350 247 56 139 chr11 16037275 16037383 -105806473 + RMER12 LTR ERVK 985 1083 -239 6 707 4770 103 3 3 chr11 16038219 16038891 -105804965 - L1_Mus3 LINE L1 -7 6631 5960 6 707 294 296 120 17 chr11 16041972 16042089 -105801767 - MLT1D LTR MaLR -10 495 367 6 707 243 337 103 65 chr11 16042536 16042720 -105801136 - MLT1D LTR MaLR -295 210 20 6 707 1016 282 50 64 chr11 16043510 16044175 -105799681 - MTD-int LTR MaLR -413 845 5 6 707 998 290 75 39 chr11 16044179 16044538 -105799318 - MTD LTR MaLR 0 419 48 6 707 198 0 0 0 chr11 16044897 16044919 -105798937 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 707 294 282 14 0 chr11 16045522 16045593 -105798263 - ID4_ SINE ID -8 75 4 7 707 181 109 43 0 chr11 16045794 16045840 -105798016 + A-rich Low_complexity Low_complexity 3 50 0 7 707 1040 261 128 49 chr11 16047066 16047803 -105796053 - Lx9 LINE L1 -5 7639 6845 7 707 602 283 204 9 chr11 16048267 16048685 -105795171 + L1MC1 LINE L1 5353 5861 -472 7 707 2312 132 19 3 chr11 16049051 16049416 -105794440 - Lx2A1 LINE L1 -11 6997 6627 7 707 886 145 110 0 chr11 16049417 16049562 -105794294 + Lx2A1 LINE L1 6398 6558 -450 7 707 500 277 108 15 chr11 16049807 16050141 -105793715 + L1MEc LINE L1 843 1207 -5193 7 707 250 236 0 14 chr11 16051436 16051509 -105792347 - Lx7 LINE L1 0 7696 7625 7 707 276 176 0 0 chr11 16051585 16051636 -105792220 + MusHAL1 LINE L1 1279 1329 -1383 7 707 18754 142 18 12 chr11 16051671 16055322 -105788534 + L1_Mus2 LINE L1 823 4490 -1393 7 707 1274 103 0 26 chr11 16055322 16055512 -105788344 + B2_Mm1t SINE B2 4 188 -5 7 707 7214 91 0 13 chr11 16055512 16056641 -105787215 + L1_Mus2 LINE L1 5452 6565 -1 7 707 290 293 56 83 chr11 16057261 16057477 -105786379 + RMER10A LTR ERVL 214 423 -19 8 707 453 19 0 0 chr11 16057915 16057969 -105785887 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 707 360 88 0 0 chr11 16058726 16058783 -105785073 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 707 258 32 0 0 chr11 16058784 16058815 -105785041 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 707 921 86 0 0 chr11 16059669 16059797 -105784059 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 8 707 1201 61 0 0 chr11 16060196 16060344 -105783512 - B1_Mus1 SINE Alu 0 148 1 8 707 405 104 26 13 chr11 16060474 16060552 -105783304 + (TCTCCC)n Simple_repeat Simple_repeat 2 80 0 8 707 800 209 166 19 chr11 16060581 16060812 -105783044 + RLTR20B3 LTR ERVK 281 521 -56 8 707 592 106 26 9 chr11 16061309 16061423 -105782433 + L1_Mus3 LINE L1 6518 6633 -5 8 707 216 402 49 0 chr11 16061547 16061649 -105782207 + MER5B DNA MER1_type 36 142 -36 8 707 636 316 0 38 chr11 16061692 16061850 -105782006 + RSINE1 SINE B4 13 164 -1 9 707 324 0 0 0 chr11 16061852 16061888 -105781968 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 9 707 530 280 120 90 chr11 16061945 16062345 -105781511 - RCHARR1 DNA MER1_type -4 970 559 9 707 693 291 29 0 chr11 16062335 16062510 -105781346 + B3 SINE B2 8 187 -29 9 707 478 220 72 13 chr11 16062492 16062644 -105781212 - RCHARR1 DNA MER1_type -355 619 459 9 707 4970 248 90 28 chr11 16062645 16064531 -105779325 + Lx9 LINE L1 5413 7482 -162 9 707 4783 36 2 3 chr11 16064635 16065214 -105778642 - L1Md_F2 LINE L1 0 6582 6005 9 707 830 42 17 0 chr11 16065214 16065332 -105778524 - L1Md_A LINE L1 -1 6581 6462 9 707 1224 7 87 0 chr11 16065340 16065490 -105778366 - L1Md_F2 LINE L1 -599 5983 5821 9 707 3258 67 2 2 chr11 16065482 16065904 -105777952 + L1_Mm LINE L1 4697 5118 -765 9 707 776 285 5 0 chr11 16065906 16066092 -105777764 - Lx9 LINE L1 -924 6720 6534 9 707 531 0 0 0 chr11 16066348 16066407 -105777449 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 707 396 0 0 0 chr11 16067052 16067096 -105776760 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 707 1166 57 0 0 chr11 16067440 16067581 -105776275 + B1_Mus2 SINE Alu 2 142 -5 1 707 465 19 0 0 chr11 16067584 16067638 -105776218 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 707 7796 227 42 82 chr11 16067649 16071375 -105772481 + Lx6 LINE L1 3860 7444 -16 1 707 575 14 14 0 chr11 16071402 16071474 -105772382 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 707 2498 198 37 12 chr11 16071675 16072192 -105771664 + Lx3C LINE L1 6445 6974 -2 1 707 23 33 0 0 chr11 16072289 16072319 -105771537 + AT_rich Low_complexity Low_complexity 1 30 0 1 707 24 32 0 0 chr11 16073259 16073290 -105770566 + AT_rich Low_complexity Low_complexity 1 31 0 1 707 210 291 176 55 chr11 16074176 16074358 -105769498 - L2a LINE L2 -8 3418 3215 1 707 24 32 0 0 chr11 16074466 16074497 -105769359 + AT_rich Low_complexity Low_complexity 1 31 0 1 707 32 57 0 0 chr11 16074588 16074641 -105769215 + AT_rich Low_complexity Low_complexity 1 53 0 1 707 848 246 40 15 chr11 16075675 16075873 -105767983 - B3 SINE B2 -13 203 1 1 707 1248 306 33 50 chr11 16076259 16076741 -105767115 - Lx8 LINE L1 -304 7169 6696 1 707 23 0 0 0 chr11 16077230 16077253 -105766603 + AT_rich Low_complexity Low_complexity 1 23 0 1 707 261 0 0 0 chr11 16077770 16077799 -105766057 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 707 7698 52 0 4 chr11 16078754 16079944 -105763912 + L1Md_F2 LINE L1 5359 6542 -40 1 707 254 50 0 24 chr11 16079944 16079985 -105763871 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 707 830 276 62 11 chr11 16083505 16083941 -105759915 + L1_Mur3 LINE L1 1286 1743 -4137 1 707 4109 89 21 20 chr11 16083990 16084596 -105759260 + L1_Mus3 LINE L1 6020 6626 -12 1 707 374 0 22 0 chr11 16084599 16084645 -105759211 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 707 1152 76 0 9 chr11 16084812 16085027 -105758829 - L1_Mus1 LINE L1 -468 5823 5632 1 707 260 253 21 21 chr11 16085108 16085201 -105758655 - L1_Rod LINE L1 -3685 2162 2070 1 707 309 335 76 16 chr11 16086183 16086368 -105757488 - MLT1A0 LTR MaLR -3 362 167 1 707 8359 109 10 31 chr11 16086900 16088205 -105755651 + Lx3A LINE L1 5697 6974 -7 1 707 24074 25 1 0 chr11 16088560 16091411 -105752445 + L1Md_T LINE L1 2734 5586 -297 1 707 8476 28 1 0 chr11 16091411 16092406 -105751450 + L1Md_T LINE L1 5587 6582 0 1 707 1387 246 14 12 chr11 16092406 16092475 -105751381 + L1M1 LINE L1 5616 5686 -614 1 707 355 280 123 9 chr11 16092786 16093013 -105750843 - Charlie1 DNA MER1_type -1 2780 2528 1 707 766 262 40 66 chr11 16093355 16093629 -105750227 - Charlie1 DNA MER1_type -258 2523 2257 1 707 1886 163 120 5 chr11 16094380 16094756 -105749100 + MTC LTR MaLR 3 421 0 1 707 562 311 51 113 chr11 16094816 16095230 -105748626 + MTD LTR MaLR 18 405 -14 1 707 1048 249 133 9 chr11 16095710 16096026 -105747830 + Lx9 LINE L1 6309 6663 -981 1 707 322 98 39 0 chr11 16096055 16096106 -105747750 - Lx7 LINE L1 -5 7691 7639 1 707 1079 228 32 181 chr11 16096129 16096296 -105747560 + RLTR14 LTR ERV1 2 107 -275 1 707 563 40 0 13 chr11 16096296 16096371 -105747485 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1 707 1458 33 0 0 chr11 16096371 16096551 -105747305 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 707 1079 228 32 181 chr11 16096551 16096752 -105747104 + RLTR14 LTR ERV1 108 315 -67 1 707 1708 230 79 45 chr11 16096782 16097338 -105746518 - Lx7 LINE L1 -57 7639 7065 1 707 8840 214 48 53 chr11 16097334 16099814 -105744042 - Lx7 LINE L1 -1138 6558 4092 1 707 1012 61 0 44 chr11 16099814 16099951 -105743905 + B1_Mus2 SINE Alu 3 133 -14 1 707 207 0 0 0 chr11 16099954 16099977 -105743879 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 707 8840 198 43 57 chr11 16099977 16100444 -105743412 - Lx7 LINE L1 -1789 4091 3651 1 707 3624 114 59 2 chr11 16100450 16101023 -105742833 - Lx3_Mus LINE L1 -8 7001 6396 1 707 22196 94 11 9 chr11 16101024 16104264 -105739592 - L1_Mur1 LINE L1 -9 5877 2631 1 707 2710 25 15 30 chr11 16104264 16104596 -105739260 - IAPLTR2b LTR ERVK 0 327 1 1 707 6181 69 12 17 chr11 16104598 16105429 -105738427 - IAPEz-int LTR ERVK -2 6479 5653 1 707 2684 67 0 3 chr11 16105424 16105767 -105738089 - IAPEz-int LTR ERVK -4781 1700 1359 1 707 4099 91 24 25 chr11 16105767 16106578 -105737278 - IAPEz-int LTR ERVK -5819 662 9 1 707 2717 34 0 44 chr11 16106579 16106921 -105736935 - IAPLTR2b LTR ERVK 0 327 1 1 707 9589 96 15 0 chr11 16106921 16107527 -105736329 - L1_Mur1 LINE L1 -3250 2636 2027 1 707 372 43 0 0 chr11 16107527 16107573 -105736283 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 707 9589 128 78 3 chr11 16107573 16108994 -105734862 - L1_Mur1 LINE L1 -3860 2026 238 1 707 1371 230 65 15 chr11 16108994 16109395 -105734461 - Lx7 LINE L1 -2214 3666 3246 1 707 4434 111 34 11 chr11 16109410 16110111 -105733745 - L1_Mus2 LINE L1 0 6566 5850 1 707 464 130 0 0 chr11 16110111 16110188 -105733668 - L1_Mus2 LINE L1 -566 5317 5241 1 707 627 14 0 0 chr11 16110190 16110262 -105733594 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 707 4626 137 3 0 chr11 16110262 16110994 -105732862 - L1_Mus2 LINE L1 -812 5071 4338 1 707 591 15 0 0 chr11 16110994 16111062 -105732794 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 707 483 18 0 0 chr11 16111062 16111117 -105732739 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 707 18108 134 12 22 chr11 16111117 16115107 -105728749 - L1_Mus2 LINE L1 -22 6544 598 1 707 866 223 12 4 chr11 16115113 16115361 -105728495 - Lx7 LINE L1 -2636 3244 2995 1 707 331 340 9 55 chr11 16115361 16115470 -105728386 - MTE2b LTR MaLR -52 327 224 1 707 422 273 7 29 chr11 16115488 16115624 -105728232 - Lx8 LINE L1 -526 6947 6815 1 707 386 337 70 75 chr11 16116166 16116352 -105727504 + B4 SINE B4 104 288 -4 1 707 3287 248 41 63 chr11 16116522 16116844 -105727012 - Lx7 LINE L1 -6409 1319 1015 1 707 782 140 0 40 chr11 16116844 16116993 -105726863 - L1Md_F2 LINE L1 0 6582 6440 1 707 3287 248 41 63 chr11 16116993 16117741 -105726115 - Lx7 LINE L1 -6714 1014 272 1 707 294 29 0 0 chr11 16117793 16117828 -105726028 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 707 4676 90 0 2 chr11 16118917 16119551 -105724305 - L1_Mus2 LINE L1 -2 6564 5932 1 707 589 83 0 0 chr11 16119551 16119643 -105724213 + L1_Mus2 LINE L1 5847 5938 -1120 1 707 2861 120 68 18 chr11 16119856 16120357 -105723499 - RLTR11A LTR ERVK -2 526 1 1 707 32 0 0 0 chr11 16120628 16120660 -105723196 + AT_rich Low_complexity Low_complexity 1 32 0 1 707 437 295 117 19 chr11 16120777 16121188 -105722668 - L1M5 LINE L1 -2444 3702 3252 1 707 491 289 182 47 chr11 16121280 16121645 -105722211 - L1M5 LINE L1 -3000 3146 2731 1 88 3198 58 0 0 chr11 16121645 16122040 -105721816 - L1_Mus2 LINE L1 -2 6564 6170 1 708 491 315 124 66 chr11 16122040 16122281 -105721575 - L1M5 LINE L1 -3416 2730 2497 1 708 251 54 27 0 chr11 16122374 16122411 -105721445 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 708 211 163 47 0 chr11 16122414 16122457 -105721399 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 1 708 180 0 0 0 chr11 16122461 16122481 -105721375 + (T)n Simple_repeat Simple_repeat 1 20 0 1 708 436 314 139 51 chr11 16122558 16122911 -105720945 + MER82 DNA MER2_type 2 385 -268 1 708 416 316 118 0 chr11 16122956 16123184 -105720672 - Lx8 LINE L1 -2 7471 7217 1 708 2004 182 70 33 chr11 16123190 16123587 -105720269 - RLTR11A LTR ERVK -101 427 16 1 708 387 304 81 30 chr11 16124539 16124810 -105719046 - L1MC3 LINE L1 -859 6926 6642 1 708 408 293 65 78 chr11 16124858 16125180 -105718676 - L1MC3 LINE L1 -1246 6539 6222 1 708 33 25 0 0 chr11 16125648 16125688 -105718168 + AT_rich Low_complexity Low_complexity 1 40 0 1 708 25 75 0 0 chr11 16125860 16125913 -105717943 + AT_rich Low_complexity Low_complexity 1 53 0 1 708 5063 245 81 15 chr11 16126043 16127445 -105716411 - Lx6 LINE L1 -1 7459 5965 1 708 1754 198 59 5 chr11 16128004 16128395 -105715461 - L1_Mur3 LINE L1 -2 5878 5467 1 708 2500 118 35 60 chr11 16128395 16128882 -105714974 + IAPLTR2_Mm LTR ERVK 1 475 0 1 708 4757 47 30 14 chr11 16128882 16129527 -105714329 + IAPEz-int LTR ERVK 8 662 -5819 1 708 424 38 0 0 chr11 16129527 16129580 -105714276 + IAPEz-int LTR ERVK 1359 1411 -5070 1 708 1739 115 4 4 chr11 16129579 16129841 -105714015 + IAPEz-int LTR ERVK 2236 2497 -5183 1 708 886 73 24 0 chr11 16129838 16129961 -105713895 + IAPEz-int LTR ERVK 4785 4910 -2770 1 708 19698 22 5 0 chr11 16129963 16132311 -105711545 + IAPEz-int LTR ERVK 4123 6481 0 1 708 2488 112 43 68 chr11 16132311 16132798 -105711058 + IAPLTR2_Mm LTR ERVK 1 475 0 1 708 703 194 45 0 chr11 16132799 16132954 -105710902 - L1_Mur3 LINE L1 -409 5471 5310 1 708 366 23 0 0 chr11 16132990 16133033 -105710823 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 708 6852 208 72 34 chr11 16133193 16133713 -105710143 - L1_Mur3 LINE L1 -564 5316 4800 1 708 183 42 0 0 chr11 16133713 16133737 -105710119 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 708 6852 208 72 34 chr11 16133737 16135146 -105708710 - L1_Mur3 LINE L1 -1081 4799 3313 1 708 734 179 49 19 chr11 16135147 16135358 -105708498 - L1_Mur3 LINE L1 -4082 1798 1583 1 708 523 0 30 0 chr11 16135367 16135434 -105708422 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1 708 237 276 158 0 chr11 16136398 16136474 -105707382 - RMER21B LTR ERV1 -275 567 480 1 708 180 171 0 28 chr11 16137945 16137981 -105705875 + L4 LINE RTE 308 342 -1687 1 708 403 244 217 0 chr11 16138147 16138262 -105705594 - B1_Mus2 SINE Alu -7 140 1 1 708 428 325 90 79 chr11 16139052 16139476 -105704380 - L1ME3A LINE L1 -85 6077 5630 1 708 240 263 101 19 chr11 16139775 16139909 -105703947 + RMER21B LTR ERV1 514 684 -263 1 708 767 292 25 158 chr11 16139925 16140279 -105703577 + MTE2a LTR MaLR 29 335 -44 1 708 369 215 140 70 chr11 16140273 16140355 -105703501 + B1_Mur4 SINE Alu 35 130 -20 1 708 5193 87 68 100 chr11 16140355 16141277 -105702579 - RLTR13B1 LTR ERVK 0 893 1 1 708 369 215 140 70 chr11 16141277 16141294 -105702562 + B1_Mur4 SINE Alu 131 141 -9 1 708 495 0 0 0 chr11 16141296 16141351 -105702505 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1 708 586 89 22 0 chr11 16141522 16141612 -105702244 + Lx2 LINE L1 6751 6842 -155 1 708 274 141 47 0 chr11 16141613 16141677 -105702179 - Lx2B LINE L1 -66 6942 6876 1 708 1859 212 44 79 chr11 16141677 16142204 -105701652 + RLTR26 LTR ERVK 1 546 -96 1 708 667 221 26 26 chr11 16142189 16142342 -105701514 + RLTR26 LTR ERVK 490 642 0 1 708 3357 145 92 5 chr11 16142342 16142985 -105700871 - Lx2B LINE L1 -114 6886 6188 1 708 236 307 50 18 chr11 16142995 16143214 -105700642 - L1ME3A LINE L1 -826 5320 5095 1 708 567 0 0 0 chr11 16143439 16143502 -105700354 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 1 708 5744 199 23 17 chr11 16143504 16144948 -105698908 - Lx4B LINE L1 -22 7036 5498 1 708 6140 72 12 10 chr11 16144948 16145752 -105698104 + RLTR13D1 LTR ERVK 1 806 0 1 708 2784 193 12 22 chr11 16145752 16145954 -105697902 - Lx4B LINE L1 -380 5497 5290 1 708 1598 179 46 4 chr11 16145969 16146250 -105697606 - ORR1B1 LTR MaLR -51 343 51 1 708 3171 186 40 3 chr11 16146285 16147286 -105696570 - Lx4B LINE L1 -3939 1938 898 1 708 183 232 0 0 chr11 16148094 16148150 -105695706 + (CATA)n Simple_repeat Simple_repeat 1 56 0 1 708 3332 48 2 0 chr11 16148173 16148568 -105695288 - MTA_Mm LTR MaLR 0 396 1 1 708 22 0 0 0 chr11 16150622 16150644 -105693212 + AT_rich Low_complexity Low_complexity 1 22 0 1 708 270 234 0 0 chr11 16150898 16150975 -105692881 + L1_Rod LINE L1 5141 5217 -630 1 708 198 171 0 0 chr11 16150994 16151035 -105692821 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 708 231 301 13 53 chr11 16151068 16151219 -105692637 + L1M1 LINE L1 5336 5480 -820 1 708 1145 60 0 7 chr11 16151347 16151497 -105692359 + L1Md_F2 LINE L1 5438 5586 -297 1 708 8265 40 2 0 chr11 16151497 16152488 -105691368 + L1Md_F2 LINE L1 5587 6579 -3 1 708 25 0 0 0 chr11 16152488 16152513 -105691343 + AT_rich Low_complexity Low_complexity 1 25 0 1 708 222 91 0 0 chr11 16155572 16155605 -105688251 + (A)n Simple_repeat Simple_repeat 1 33 0 1 708 207 0 0 0 chr11 16156331 16156354 -105687502 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1 708 669 13 0 0 chr11 16156801 16156879 -105686977 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 708 243 0 0 0 chr11 16156879 16156905 -105686951 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 708 423 0 0 0 chr11 16158332 16158379 -105685477 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 708 477 99 0 0 chr11 16160388 16160469 -105683387 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 708 313 274 23 27 chr11 16160469 16160650 -105683206 + GA-rich Low_complexity Low_complexity 1 180 0 2 708 228 233 115 49 chr11 16162365 16162487 -105681369 + MER96B DNA hAT 109 238 -179 2 708 253 333 12 0 chr11 16164341 16164422 -105679434 + ID4 SINE ID 2 83 0 2 708 392 67 17 0 chr11 16165715 16165775 -105678081 + (TAAAA)n Simple_repeat Simple_repeat 3 63 0 2 708 21 0 0 0 chr11 16165778 16165799 -105678057 + AT_rich Low_complexity Low_complexity 1 21 0 2 708 1196 219 5 0 chr11 16165944 16166168 -105677688 - URR1A DNA MER1_type 0 226 2 2 708 23 68 0 0 chr11 16166599 16166643 -105677213 + AT_rich Low_complexity Low_complexity 1 44 0 2 708 243 371 78 14 chr11 16167744 16167886 -105675970 + MLT1H1 LTR MaLR 13 163 -392 2 708 6190 76 19 4 chr11 16169243 16170094 -105673762 - L1Md_F2 LINE L1 0 6582 5731 2 708 181 245 0 102 chr11 16170585 16170644 -105673212 + L2 LINE L2 52 104 -3315 2 708 467 319 102 89 chr11 16170651 16170889 -105672967 - MER44A DNA MER2_type -5 334 82 2 708 934 231 44 5 chr11 16170889 16171093 -105672763 - B3 SINE B2 0 216 5 2 708 467 319 102 89 chr11 16171093 16171178 -105672678 - MER44A DNA MER2_type -258 81 7 2 708 887 139 6 19 chr11 16171916 16172077 -105671779 + Lx3B LINE L1 6812 6970 -3 2 708 324 0 0 0 chr11 16172085 16172121 -105671735 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 2 708 498 222 110 57 chr11 16173208 16173628 -105670228 + RMER17C LTR ERVK 97 439 -519 2 708 1253 193 24 4 chr11 16175166 16175421 -105668435 - Lx2A1 LINE L1 -5 7003 6744 2 708 359 263 15 119 chr11 16176509 16176533 -105667323 - B4A SINE B4 0 292 271 2 708 609 52 0 0 chr11 16176533 16176610 -105667246 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 708 359 263 15 119 chr11 16176610 16176719 -105667137 - B4A SINE B4 -22 270 173 2 708 869 39 0 0 chr11 16177131 16177234 -105666622 + MERVL-int LTR ERVL 3057 3159 -2326 2 708 184 184 163 0 chr11 16177741 16177790 -105666066 - L3 LINE CR1 -3470 1019 963 2 708 188 301 83 66 chr11 16178149 16178270 -105665586 + MIRm SINE MIR 70 192 -84 2 708 258 105 0 0 chr11 16178688 16178726 -105665130 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2 708 222 211 0 0 chr11 16179778 16179835 -105664021 + A-rich Low_complexity Low_complexity 1 57 0 2 708 482 98 17 26 chr11 16180714 16180829 -105663027 + (TTTTTG)n Simple_repeat Simple_repeat 2 115 0 2 708 468 342 97 10 chr11 16184654 16184849 -105659007 + MER2 DNA MER2_type 131 342 -3 2 708 25 0 0 0 chr11 16185105 16185130 -105658726 + AT_rich Low_complexity Low_complexity 1 25 0 2 708 388 303 27 18 chr11 16185196 16185307 -105658549 + PB1D10 SINE Alu 6 117 0 2 708 606 28 0 0 chr11 16186145 16186217 -105657639 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 708 332 213 0 8 chr11 16186238 16186366 -105657490 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 708 384 254 68 22 chr11 16186397 16186550 -105657306 - B4A SINE B4 0 292 128 2 708 516 289 281 3 chr11 16186849 16187144 -105656712 + Tigger7 DNA MER2_type 43 419 -2072 2 708 377 267 19 56 chr11 16187157 16187264 -105656592 + Tigger7 DNA MER2_type 2383 2485 -6 2 708 223 231 302 52 chr11 16187487 16187583 -105656273 + PB1D7 SINE Alu 1 120 0 2 708 289 264 30 44 chr11 16189047 16189182 -105654674 + L1M5 LINE L1 3616 3748 -2398 2 708 246 62 0 0 chr11 16189953 16189985 -105653871 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2 708 622 323 6 77 chr11 16190038 16190350 -105653506 + B4A SINE B4 2 291 -1 2 708 459 0 0 0 chr11 16190350 16190401 -105653455 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 708 260 250 0 0 chr11 16190774 16190834 -105653022 + RLTR14 LTR ERV1 195 254 -128 2 708 728 24 0 0 chr11 16190837 16190920 -105652936 - L1Md_F2 LINE L1 -711 5871 5789 2 708 4879 107 0 19 chr11 16190920 16191644 -105652212 + L1Md_F2 LINE L1 5869 6578 -4 2 708 275 217 68 55 chr11 16191659 16191732 -105652124 + RLTR14 LTR ERV1 260 333 -49 2 708 285 309 70 92 chr11 16192067 16192338 -105651518 + MLT1A LTR MaLR 108 372 -2 2 708 270 0 0 0 chr11 16192627 16192657 -105651199 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 708 333 284 18 27 chr11 16193126 16193238 -105650618 + Lx8 LINE L1 7244 7354 -119 2 708 2904 168 258 10 chr11 16194638 16195129 -105648727 + RMER21B LTR ERV1 1 642 -200 2 708 666 25 0 0 chr11 16195129 16195209 -105648647 + (CAGCT)n Simple_repeat Simple_repeat 1 80 0 2 708 2904 168 258 10 chr11 16195209 16195392 -105648464 + RMER21B LTR ERV1 643 841 -1 2 708 2634 239 41 35 chr11 16195520 16196245 -105647611 + Lx7 LINE L1 6610 7339 -357 2 708 250 200 15 30 chr11 16196537 16196604 -105647252 + Lx7 LINE L1 7613 7678 -18 2 708 532 243 137 14 chr11 16196613 16196759 -105647097 + MTD LTR MaLR 197 360 -59 2 708 532 301 103 24 chr11 16197039 16197619 -105646237 + L1_Mur3 LINE L1 1223 1880 -3967 2 708 240 342 31 12 chr11 16197679 16197839 -105646017 + L1_Mur3 LINE L1 2069 2231 -3616 2 708 877 291 79 60 chr11 16198079 16198121 -105645735 + Lx8 LINE L1 6058 6095 -1378 2 708 705 24 0 0 chr11 16198121 16198204 -105645652 + (GGGA)n Simple_repeat Simple_repeat 4 86 0 2 708 877 291 79 60 chr11 16198204 16198592 -105645264 + Lx8 LINE L1 6096 6495 -978 2 708 387 0 0 0 chr11 16198622 16198665 -105645191 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 708 864 315 45 3 chr11 16198769 16199078 -105644778 - Lx8 LINE L1 -257 7216 6895 2 708 485 282 69 19 chr11 16200255 16200414 -105643442 + MIRc SINE MIR 102 268 0 2 708 235 305 0 24 chr11 16200830 16200914 -105642942 + L1M6 LINE L1 111 192 -6304 2 708 315 340 0 0 chr11 16201334 16201440 -105642416 + B1F2 SINE Alu 39 144 -5 2 708 1457 255 65 107 chr11 16201863 16202339 -105641517 + RLTR20B1 LTR ERVK 1 455 -108 2 708 204 40 0 0 chr11 16202339 16202364 -105641492 + (ATG)n Simple_repeat Simple_repeat 1 25 0 2 708 1457 255 65 107 chr11 16202364 16202379 -105641477 + RLTR20B1 LTR ERVK 456 468 -95 2 708 597 28 0 0 chr11 16202379 16202450 -105641406 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 708 1457 255 65 107 chr11 16202450 16202545 -105641311 + RLTR20B1 LTR ERVK 469 562 -1 2 708 283 338 34 99 chr11 16202809 16203042 -105640814 - Lx8 LINE L1 -202 7271 7054 2 708 4269 17 2 0 chr11 16203630 16204111 -105639745 + LTRIS_Mm LTR ERV1 1 482 0 2 708 1098 289 31 22 chr11 16204188 16204602 -105639254 - L1_Mur3 LINE L1 -179 5701 5284 2 708 3000 152 16 4 chr11 16204602 16205112 -105638744 - Lx2 LINE L1 0 6997 6482 2 708 22 56 0 0 chr11 16205147 16205183 -105638673 + AT_rich Low_complexity Low_complexity 1 36 0 2 708 2051 247 73 15 chr11 16205197 16205644 -105638212 + RLTR20B1 LTR ERVK 1 457 -106 2 708 840 39 0 0 chr11 16205644 16205748 -105638108 + (TG)n Simple_repeat Simple_repeat 2 105 0 2 708 2051 247 73 15 chr11 16205748 16205818 -105638038 + RLTR20B1 LTR ERVK 458 547 -16 2 708 7766 60 1 6 chr11 16206445 16207429 -105636427 - L1Md_F2 LINE L1 -2 6580 5602 2 708 2651 241 69 7 chr11 16207885 16208091 -105635765 + Lx9 LINE L1 6701 6934 -710 2 708 234 0 0 0 chr11 16208091 16208117 -105635739 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 708 2651 241 69 7 chr11 16208117 16208591 -105635265 + Lx9 LINE L1 6935 7422 -222 2 708 297 0 0 0 chr11 16208605 16208638 -105635218 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 708 477 0 0 0 chr11 16208638 16208690 -105635166 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 708 410 215 41 0 chr11 16208692 16208813 -105635043 + Lx9 LINE L1 7518 7643 -1 2 708 280 325 102 8 chr11 16208945 16209063 -105634793 + MER5A1 DNA MER1_type 6 134 -32 2 708 507 290 27 27 chr11 16210519 16210668 -105633188 + B1F2 SINE Alu 1 149 0 2 708 211 36 88 35 chr11 16210668 16210725 -105633131 + A-rich Low_complexity Low_complexity 1 60 0 2 708 597 352 20 20 chr11 16211105 16211145 -105632711 - B3 SINE B2 -9 207 166 2 708 513 0 0 0 chr11 16211145 16211202 -105632654 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 708 552 15 0 0 chr11 16211202 16211266 -105632590 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 708 597 352 20 20 chr11 16211266 16211427 -105632429 - B3 SINE B2 -51 165 6 2 708 325 294 43 0 chr11 16211550 16211672 -105632184 + ID4_ SINE ID 12 138 -14 2 708 367 279 0 10 chr11 16211686 16211783 -105632073 + MTEb LTR MaLR 1 97 -282 2 708 289 216 103 51 chr11 16212080 16212158 -105631698 + ID4_ SINE ID 1 82 -1 2 708 454 293 95 24 chr11 16212158 16212494 -105631362 - L1MA6 LINE L1 -1 6299 5940 2 708 352 351 9 0 chr11 16212724 16212838 -105631018 + RSINE1 SINE B4 46 160 -5 2 708 246 287 48 29 chr11 16213024 16213128 -105630728 + MIRb SINE MIR 107 212 -56 2 708 285 116 0 0 chr11 16213463 16213506 -105630350 + L1MB1 LINE L1 6125 6167 -1 2 708 544 277 81 35 chr11 16213957 16214129 -105629727 - B3A SINE B2 -16 182 3 2 708 1058 52 0 36 chr11 16214248 16214387 -105629469 + B1_Mm SINE Alu 2 135 -12 2 708 183 28 54 27 chr11 16214388 16214425 -105629431 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 708 229 86 0 0 chr11 16214832 16214867 -105628989 - U2 snRNA snRNA -153 35 1 2 708 332 325 68 93 chr11 16215037 16215315 -105628541 + LTR33 LTR ERVL 243 513 -2 2 708 378 358 121 7 chr11 16215565 16215714 -105628142 + MER20 DNA MER1_type 1 166 -53 2 708 777 269 80 116 chr11 16216857 16217144 -105626712 - MTEb LTR MaLR -2 377 107 2 708 671 192 19 64 chr11 16217144 16217300 -105626556 - B1_Mur3 SINE Alu 0 149 1 2 708 777 269 80 116 chr11 16217300 16217399 -105626457 - MTEb LTR MaLR -273 106 5 2 708 320 289 49 88 chr11 16217611 16217816 -105626040 + LTR33 LTR ERVL 317 513 -2 2 708 1646 194 124 66 chr11 16218647 16219084 -105624772 + RLTR33 LTR ERVK 175 636 -42 2 708 388 332 77 45 chr11 16219549 16219861 -105623995 - Lx8 LINE L1 -2 7471 7150 2 708 1171 268 75 27 chr11 16219885 16220144 -105623712 - L1_Mur3 LINE L1 -1486 4394 4114 2 708 1887 118 10 3 chr11 16220144 16220434 -105623422 - L1_Mus3 LINE L1 -2 6636 6345 2 708 1171 268 75 27 chr11 16220434 16220733 -105623123 - L1_Mur3 LINE L1 -1767 4113 3809 2 708 1567 261 20 36 chr11 16220751 16221196 -105622660 - RMER13B LTR ERVK -71 837 400 2 708 1198 291 69 64 chr11 16221205 16221821 -105622035 - L1_Mur3 LINE L1 -2992 2888 2241 2 708 450 0 0 0 chr11 16221821 16221871 -105621985 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2 708 1198 291 69 64 chr11 16221871 16222021 -105621835 - L1_Mur3 LINE L1 -3640 2240 2118 2 708 2890 151 106 11 chr11 16222023 16222571 -105621285 - Lx4A LINE L1 0 7058 6459 2 708 7090 103 10 68 chr11 16222547 16224539 -105619317 + L1_Mus4 LINE L1 4730 6636 0 2 708 2568 150 40 36 chr11 16224537 16224993 -105618863 - Lx4A LINE L1 -579 6479 6040 2 708 315 0 0 0 chr11 16224993 16225028 -105618828 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 708 2568 150 40 36 chr11 16225028 16225076 -105618780 - Lx4A LINE L1 -1019 6039 5975 2 708 5657 133 8 8 chr11 16225075 16225226 -105618630 + L1_Mur2 LINE L1 4934 5080 -797 3 708 3339 33 2 8 chr11 16225226 16225624 -105618232 - MTA_Mm LTR MaLR 0 396 1 3 708 5657 133 8 8 chr11 16225624 16226409 -105617447 + L1_Mur2 LINE L1 5081 5870 -7 3 708 33649 43 0 6 chr11 16226462 16231710 -105612146 + L1Md_A LINE L1 276 5589 -297 3 708 8377 37 0 0 chr11 16231710 16232706 -105611150 + L1Md_A LINE L1 5590 6585 0 3 708 432 0 0 0 chr11 16233117 16233165 -105610691 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 708 424 319 122 61 chr11 16233225 16233472 -105610384 - B4 SINE B4 -29 263 2 3 708 1187 219 5 101 chr11 16235201 16235617 -105608239 + Lx9 LINE L1 7267 7642 -2 3 708 1119 71 0 0 chr11 16236132 16236272 -105607584 + B1_Mus1 SINE Alu 2 141 -7 3 708 939 139 0 0 chr11 16236293 16236459 -105607397 + (GA)n Simple_repeat Simple_repeat 1 166 0 3 708 416 341 8 46 chr11 16236871 16237243 -105606613 + L1M2 LINE L1 4840 5197 -946 3 708 2962 272 139 18 chr11 16237260 16237436 -105606420 + L1_Mur3 LINE L1 4102 4274 -1606 3 708 405 0 0 0 chr11 16237436 16237481 -105606375 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 708 2962 272 139 18 chr11 16237481 16237603 -105606253 + L1_Mur3 LINE L1 4275 4463 -1417 3 708 486 0 0 0 chr11 16237603 16237657 -105606199 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 708 2962 272 139 18 chr11 16237657 16238404 -105605452 + L1_Mur3 LINE L1 4464 5325 -555 3 708 840 42 33 0 chr11 16238404 16238524 -105605332 + (GGAGA)n Simple_repeat Simple_repeat 5 128 0 3 708 2962 272 139 18 chr11 16238524 16238993 -105604863 + L1_Mur3 LINE L1 5326 5800 -80 3 708 2124 257 66 84 chr11 16239571 16240439 -105603417 + RMER13A LTR ERVK 1 852 -8 3 708 558 67 0 0 chr11 16240761 16240836 -105603020 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 708 1083 271 148 3 chr11 16241592 16241958 -105601898 + MTD LTR MaLR 1 419 0 3 708 642 276 0 58 chr11 16243749 16243903 -105599953 - B3 SINE B2 -7 209 65 3 708 22 0 0 0 chr11 16243930 16243952 -105599904 + AT_rich Low_complexity Low_complexity 1 22 0 3 708 299 367 38 6 chr11 16244058 16244217 -105599639 + MER68 LTR ERVL 400 563 0 3 708 207 69 0 0 chr11 16244933 16244962 -105598894 + (A)n Simple_repeat Simple_repeat 1 29 0 3 708 1202 160 201 38 chr11 16245266 16245431 -105598425 + ORR1C1 LTR MaLR 4 183 -195 3 708 2985 73 26 19 chr11 16245431 16245849 -105598007 + BGLII LTR ERVK 1 421 0 3 708 1202 160 201 38 chr11 16245849 16245976 -105597880 + ORR1C1 LTR MaLR 184 344 -34 3 708 374 235 0 0 chr11 16246568 16246666 -105597190 + L1MA4 LINE L1 5801 5898 -399 3 708 486 0 0 0 chr11 16246681 16246735 -105597121 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 708 396 309 65 26 chr11 16247234 16247469 -105596387 - L1MD LINE L1 -804 5438 5188 3 708 1494 123 42 11 chr11 16247604 16247867 -105595989 - Lx3C LINE L1 -101 6875 6605 3 708 36 23 0 0 chr11 16247870 16247913 -105595943 + AT_rich Low_complexity Low_complexity 1 43 0 3 708 304 294 118 55 chr11 16248117 16248225 -105595631 - L1MD LINE L1 -1099 5047 4929 3 708 1674 226 7 216 chr11 16248225 16248993 -105594863 + RMER19C LTR ERVK 1 607 -4 3 708 304 294 118 55 chr11 16248993 16249377 -105594479 - L1MD LINE L1 -1218 4928 4524 3 708 23 54 0 0 chr11 16249746 16249783 -105594073 + AT_rich Low_complexity Low_complexity 1 37 0 3 708 209 33 0 32 chr11 16251742 16251773 -105592083 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 709 28 48 0 0 chr11 16253167 16253209 -105590647 + AT_rich Low_complexity Low_complexity 1 42 0 3 709 1098 0 0 0 chr11 16253592 16253719 -105590137 - L1Md_A LINE L1 -144 5739 5613 3 709 6570 16 0 0 chr11 16253719 16254463 -105589393 + L1Md_A LINE L1 5839 6582 0 3 709 21 0 0 0 chr11 16255143 16255164 -105588692 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 195 122 61 0 chr11 16255275 16255324 -105588532 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 709 11339 63 10 1 chr11 16255484 16257695 -105586161 - L1Md_F2 LINE L1 -10 6572 4343 3 709 862 119 27 40 chr11 16257717 16257866 -105585990 + B1_Mus1 SINE Alu 2 148 0 3 709 355 333 7 75 chr11 16257878 16258186 -105585670 + L1VL1 LINE L1 218 504 -5918 3 709 397 248 18 9 chr11 16258197 16258311 -105585545 + L1Md_F LINE L1 578 692 -5827 3 709 4760 111 18 9 chr11 16258308 16259107 -105584749 + MusHAL1 LINE L1 1460 2265 -447 3 709 2562 25 41 0 chr11 16259107 16259425 -105584431 - IAPEY_LTR LTR ERVK 0 385 55 3 709 3376 97 23 0 chr11 16259426 16259951 -105583905 + L1_Mm LINE L1 3464 4000 -1883 3 709 254 235 102 34 chr11 16260038 16260126 -105583730 - MIRb SINE MIR -167 101 8 3 709 479 339 22 10 chr11 16260202 16260406 -105583450 + MLT2B4 LTR ERVL 3 211 -186 3 709 225 271 93 12 chr11 16260447 16260533 -105583323 + MLT2B4 LTR ERVL 379 471 -85 3 709 285 29 0 0 chr11 16260533 16260567 -105583289 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 709 349 237 9 17 chr11 16263013 16263129 -105580727 - Lx9 LINE L1 -119 7525 7411 3 709 283 203 0 13 chr11 16263126 16263201 -105580655 + Lx9 LINE L1 7564 7637 -7 3 709 1038 292 108 60 chr11 16264489 16265036 -105578820 + RMER13A LTR ERVK 98 670 -190 3 709 1033 194 36 31 chr11 16265619 16265843 -105578013 + URR1B DNA MER1_type 1 225 0 3 709 441 0 0 0 chr11 16266100 16266149 -105577707 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 709 375 23 0 0 chr11 16266149 16266192 -105577664 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 709 30 27 0 0 chr11 16266436 16266473 -105577383 + AT_rich Low_complexity Low_complexity 1 37 0 3 709 476 0 34 0 chr11 16267932 16267991 -105575865 + (TTATA)n Simple_repeat Simple_repeat 3 63 0 3 709 1142 262 15 31 chr11 16268139 16268466 -105575390 - Lx9 LINE L1 -913 6731 6410 3 709 705 82 0 0 chr11 16268588 16268685 -105575171 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 709 207 250 0 0 chr11 16268685 16268729 -105575127 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 709 742 282 11 16 chr11 16268737 16268921 -105574935 - B3A SINE B2 -15 183 1 3 709 472 259 157 12 chr11 16269085 16269327 -105574529 - Lx8 LINE L1 0 7473 7197 3 709 497 313 112 37 chr11 16269306 16269628 -105574228 - Lx8 LINE L1 -432 7041 6696 3 709 1169 332 114 17 chr11 16269633 16270439 -105573417 + Lx8 LINE L1 5787 6670 -803 3 709 21 0 0 0 chr11 16270966 16270987 -105572869 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 423 0 0 0 chr11 16271588 16271635 -105572221 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 709 320 289 29 0 chr11 16271685 16271789 -105572067 - MER20 DNA MER1_type -67 152 46 3 709 1071 71 36 0 chr11 16272021 16272161 -105571695 - B1_Mus1 SINE Alu -2 146 2 3 709 22 56 0 0 chr11 16272493 16272529 -105571327 + AT_rich Low_complexity Low_complexity 1 36 0 3 709 270 0 0 0 chr11 16272925 16272955 -105570901 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 709 552 253 5 6 chr11 16273127 16273250 -105570606 + RSINE1 SINE B4 1 122 -170 3 709 23 0 0 0 chr11 16273261 16273284 -105570572 + AT_rich Low_complexity Low_complexity 1 23 0 3 709 588 276 92 0 chr11 16273439 16273602 -105570254 + B3 SINE B2 34 211 -5 3 709 214 371 0 0 chr11 16274264 16274334 -105569522 + MIR3 SINE MIR 133 202 -6 3 709 898 171 199 0 chr11 16275300 16275476 -105568380 + B3 SINE B2 2 212 -4 3 709 276 56 36 36 chr11 16275539 16275595 -105568261 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 3 709 822 157 168 30 chr11 16275939 16276136 -105567720 + URR1B DNA MER1_type 1 224 -1 3 709 1963 196 22 14 chr11 16276266 16276710 -105567146 - Lx9 LINE L1 -1 7643 7196 3 709 1729 166 3 0 chr11 16276713 16277027 -105566829 + L1_Mur2 LINE L1 5552 5866 -11 3 709 663 225 64 0 chr11 16277029 16277202 -105566654 + Lx4B LINE L1 6853 7036 -22 3 709 593 27 13 0 chr11 16277202 16277277 -105566579 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 3 709 327 127 0 0 chr11 16277284 16277347 -105566509 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 709 444 19 0 0 chr11 16277347 16277400 -105566456 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 709 2749 203 66 17 chr11 16277445 16278078 -105565778 + Lx9 LINE L1 6429 7092 -552 3 709 181 307 65 54 chr11 16279397 16279490 -105564366 + L2 LINE L2 2792 2885 -534 3 709 737 300 29 39 chr11 16279834 16280115 -105563741 + B4A SINE B4 1 278 -14 3 709 378 0 0 0 chr11 16280130 16280172 -105563684 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 709 228 111 0 0 chr11 16280662 16280698 -105563158 + (T)n Simple_repeat Simple_repeat 1 36 0 3 709 218 338 0 0 chr11 16281302 16281370 -105562486 + (TATG)n Simple_repeat Simple_repeat 1 68 0 3 709 297 167 0 0 chr11 16281538 16281592 -105562264 + T-rich Low_complexity Low_complexity 1 54 0 3 709 8409 56 9 2 chr11 16281606 16283438 -105560418 - L1Md_F2 LINE L1 -1 6581 4732 3 709 12067 34 7 0 chr11 16283433 16285706 -105558150 - L1Md_A LINE L1 0 6582 4291 3 709 33779 36 0 0 chr11 16285707 16291346 -105552510 + L1Md_T LINE L1 1 5589 -297 3 709 8995 7 0 0 chr11 16291346 16292342 -105551514 + L1Md_T LINE L1 5590 6585 0 3 709 22542 74 1 22 chr11 16292352 16296270 -105547586 - L1Md_A LINE L1 -1576 4307 479 3 709 433 301 52 28 chr11 16296516 16297246 -105546610 + L1_Rod LINE L1 1013 1752 -4134 3 709 192 69 47 94 chr11 16297269 16297333 -105546523 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 3 709 355 333 22 22 chr11 16297386 16297570 -105546286 + L1_Rod LINE L1 1843 2026 -3821 3 709 1159 269 39 28 chr11 16297579 16298121 -105545735 + L1M2 LINE L1 4082 4629 -1514 3 709 1476 56 4 0 chr11 16298180 16298413 -105545443 + (GAAA)n Simple_repeat Simple_repeat 1 234 0 3 709 358 260 10 10 chr11 16298415 16298516 -105545340 + L1_Mur3 LINE L1 4668 4768 -1112 3 709 7493 166 48 42 chr11 16298513 16300320 -105543536 - L1_Mur3 LINE L1 -2841 3039 1222 3 709 279 0 0 0 chr11 16300320 16300351 -105543505 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 709 2949 224 70 32 chr11 16300351 16301110 -105542746 - L1_Mur3 LINE L1 -6507 1221 429 3 709 311 155 99 0 chr11 16301122 16301193 -105542663 - L1_Mur3 LINE L1 -7099 613 536 3 709 460 244 47 8 chr11 16301264 16301392 -105542464 + Lx6 LINE L1 817 949 -6779 3 709 3406 244 77 47 chr11 16301589 16302144 -105541712 + Lx6 LINE L1 6155 6738 -722 3 709 390 42 0 0 chr11 16302144 16302192 -105541664 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 709 3406 244 77 47 chr11 16302192 16302628 -105541228 + Lx6 LINE L1 6739 7174 -286 3 709 1612 353 47 43 chr11 16302631 16303665 -105540191 - MuLV-int LTR ERV1 -3273 4333 3292 3 709 180 0 0 0 chr11 16303665 16303685 -105540171 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 709 1612 353 47 43 chr11 16303685 16304220 -105539636 - MuLV-int LTR ERV1 -4315 3291 2758 3 709 204 40 0 0 chr11 16304812 16304837 -105539019 + (CTG)n Simple_repeat Simple_repeat 1 25 0 3 709 1015 69 7 7 chr11 16304837 16304983 -105538873 + (TTC)n Simple_repeat Simple_repeat 3 148 0 3 709 323 333 45 33 chr11 16305173 16305570 -105538286 - MuLV-int LTR ERV1 -3352 1711 1310 3 709 252 0 0 0 chr11 16305831 16305859 -105537997 + (A)n Simple_repeat Simple_repeat 1 28 0 4 709 186 43 0 0 chr11 16306414 16306437 -105537419 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 4 709 690 315 102 4 chr11 16306466 16306740 -105537116 + MER2 DNA MER2_type 4 304 -41 4 709 21 0 0 0 chr11 16306760 16306781 -105537075 + AT_rich Low_complexity Low_complexity 1 21 0 4 709 263 398 83 64 chr11 16307202 16307406 -105536450 - LTR41B LTR ERVL -217 541 334 4 709 354 298 66 0 chr11 16307839 16307960 -105535896 - LTR41 LTR ERVL -637 131 3 4 709 324 248 197 0 chr11 16308730 16308847 -105535009 - Lx9 LINE L1 -595 7049 6910 4 709 600 340 14 16 chr11 16308852 16309273 -105534583 + Lx9 LINE L1 6890 7449 -195 4 709 309 51 0 0 chr11 16309274 16309313 -105534543 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 709 26 53 0 17 chr11 16309414 16309452 -105534404 + AT_rich Low_complexity Low_complexity 1 38 0 4 709 1100 109 0 0 chr11 16309452 16309599 -105534257 - B1_Mus1 SINE Alu 0 148 2 4 709 26 53 0 17 chr11 16309599 16309618 -105534238 + AT_rich Low_complexity Low_complexity 1 19 0 4 709 27 0 0 0 chr11 16310267 16310294 -105533562 + AT_rich Low_complexity Low_complexity 1 27 0 4 709 192 97 0 0 chr11 16313172 16313203 -105530653 + (CAGAGA)n Simple_repeat Simple_repeat 5 35 0 4 709 447 19 0 0 chr11 16313210 16313262 -105530594 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 709 252 358 90 0 chr11 16313481 16313615 -105530241 - MLT1J-int LTR MaLR -338 1049 904 4 709 246 407 25 15 chr11 16314021 16314218 -105529638 - MLT1J-int LTR MaLR -1086 301 103 4 709 194 414 0 0 chr11 16314912 16315011 -105528845 - L2 LINE L2 -930 2489 2391 4 709 29 47 0 0 chr11 16315205 16315248 -105528608 + AT_rich Low_complexity Low_complexity 1 43 0 4 709 231 317 105 47 chr11 16315248 16315334 -105528522 + ORR1E LTR MaLR 49 139 -220 4 709 213 39 0 0 chr11 16315366 16315392 -105528464 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 709 595 191 37 0 chr11 16315987 16316123 -105527733 + Lx9 LINE L1 6979 7119 -525 4 709 194 91 30 0 chr11 16316591 16316624 -105527232 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 4 709 282 56 0 0 chr11 16316901 16316937 -105526919 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 709 562 273 127 78 chr11 16317781 16318142 -105525714 - MTEb LTR MaLR 0 379 1 4 709 8026 24 1 0 chr11 16318184 16319611 -105524245 - L1Md_T LINE L1 0 6582 5154 4 709 3593 306 86 49 chr11 16319652 16321079 -105522777 - MTE-int LTR MaLR -95 1485 6 4 709 1081 294 29 81 chr11 16321124 16321468 -105522388 - MTEa LTR MaLR -53 326 1 4 709 544 358 70 38 chr11 16321500 16321927 -105521929 - MER45B DNA Tip100 -314 726 286 4 709 258 317 150 34 chr11 16322121 16322268 -105521588 - MER34 LTR ERV1 -4 538 375 4 709 395 317 71 12 chr11 16322327 16322496 -105521360 - MER34 LTR ERV1 -248 294 116 4 709 1063 318 70 4 chr11 16323733 16324204 -105519652 - Lx8 LINE L1 -560 6913 6412 4 709 714 24 0 0 chr11 16324261 16324345 -105519511 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 709 228 283 0 0 chr11 16324409 16324469 -105519387 + Lx8 LINE L1 7051 7110 -363 4 709 348 355 80 29 chr11 16324498 16324774 -105519082 + Lx8 LINE L1 7176 7465 -8 4 709 780 305 46 1 chr11 16324943 16325271 -105518585 - L1MA4A LINE L1 -1714 5930 5611 4 709 2303 226 28 12 chr11 16325279 16325777 -105518079 - Lx5 LINE L1 0 7050 6545 4 709 281 281 0 0 chr11 16326172 16326229 -105517627 + RSINE1 SINE B4 84 140 -25 4 709 1095 293 17 30 chr11 16326709 16327005 -105516851 + MTE2a LTR MaLR 36 327 -52 4 709 659 200 23 0 chr11 16327185 16327315 -105516541 + B1_Mus1 SINE Alu 4 136 -12 4 709 567 43 0 0 chr11 16327316 16327386 -105516470 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 4 709 462 238 0 0 chr11 16327798 16327899 -105515957 + Lx7 LINE L1 7219 7319 -377 4 709 243 0 0 0 chr11 16327994 16328021 -105515835 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 709 357 289 0 0 chr11 16328049 16328163 -105515693 + Lx7 LINE L1 7561 7674 -22 4 709 25 31 0 0 chr11 16328817 16328849 -105515007 + AT_rich Low_complexity Low_complexity 1 32 0 4 709 2235 155 8 11 chr11 16328952 16329318 -105514538 + ORR1C1 LTR MaLR 3 367 -11 4 709 229 244 60 12 chr11 16329579 16329662 -105514194 + MER63D DNA AcHobo 353 439 -622 4 709 328 326 51 11 chr11 16329737 16329914 -105513942 + MER63D DNA AcHobo 431 614 -447 4 709 1435 302 64 40 chr11 16330170 16330794 -105513062 - Lx8 LINE L1 -8 7465 6827 4 709 1893 282 26 44 chr11 16331272 16331974 -105511882 - Lx8 LINE L1 -656 6817 6129 4 709 21 36 0 0 chr11 16332232 16332260 -105511596 + AT_rich Low_complexity Low_complexity 1 28 0 4 709 2281 283 45 40 chr11 16332492 16333777 -105510079 - L1_Mur3 LINE L1 -2519 3361 2070 4 709 2232 171 71 0 chr11 16333791 16334172 -105509684 + MTC LTR MaLR 1 408 -13 4 709 296 286 59 62 chr11 16334208 16334566 -105509290 - L1_Mur3 LINE L1 -3852 2028 1672 4 709 535 256 15 88 chr11 16334587 16334687 -105509169 - B3 SINE B2 -86 130 40 4 709 1289 57 97 0 chr11 16334687 16334703 -105509153 - B2_Mm1a SINE B2 0 193 178 4 709 324 0 0 0 chr11 16334703 16334739 -105509117 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 4 709 1289 57 97 0 chr11 16334739 16334898 -105508958 - B2_Mm1a SINE B2 -16 177 2 4 709 535 256 15 88 chr11 16334898 16334934 -105508922 - B3 SINE B2 -177 39 4 4 709 9089 75 16 10 chr11 16334973 16336947 -105506909 + Lx3A LINE L1 4989 6972 -9 4 709 275 296 28 43 chr11 16337009 16337260 -105506596 - L1_Rod LINE L1 -4190 1657 1420 4 709 2900 162 105 22 chr11 16337262 16337855 -105506001 - RLTR26 LTR ERVK 0 642 1 4 709 264 59 0 0 chr11 16340453 16340487 -105503369 + (CAGG)n Simple_repeat Simple_repeat 2 35 0 4 709 577 0 27 0 chr11 16340504 16340577 -105503279 + (TTG)n Simple_repeat Simple_repeat 1 75 0 4 709 3990 151 103 44 chr11 16340668 16341570 -105502286 - RMER17B LTR ERVK -3 955 1 4 709 32994 76 1 0 chr11 16342795 16348262 -105495594 - L1Md_F LINE L1 -19 5864 392 4 709 264 280 192 49 chr11 16348262 16348296 -105495560 - MLT2B4 LTR ERVL -324 232 200 4 709 342 0 0 0 chr11 16348296 16348334 -105495522 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 709 264 280 192 49 chr11 16348334 16348502 -105495354 - MLT2B4 LTR ERVL -357 199 1 4 709 560 300 46 41 chr11 16348502 16348719 -105495137 - MLT1C LTR MaLR -249 218 1 4 709 346 250 49 28 chr11 16349004 16349174 -105494682 + L1M5 LINE L1 5533 5705 -457 4 709 611 223 121 9 chr11 16349624 16349855 -105494001 + L1MA4 LINE L1 5357 5613 -687 4 709 1044 225 103 16 chr11 16349859 16350112 -105493744 + RMER15 LTR ERVL 191 465 -110 4 709 488 321 53 7 chr11 16350203 16350504 -105493352 + L1MA4 LINE L1 5606 5920 -380 4 709 243 0 0 0 chr11 16350865 16350892 -105492964 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 709 329 380 40 62 chr11 16351290 16351562 -105492294 + LTR78 LTR ERV1 347 612 -692 4 709 33 43 0 0 chr11 16351926 16351973 -105491883 + AT_rich Low_complexity Low_complexity 1 47 0 4 709 183 100 0 0 chr11 16352290 16352320 -105491536 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 4 709 1115 68 7 20 chr11 16352321 16352471 -105491385 - B1_Mus1 SINE Alu 0 148 1 4 709 856 297 34 64 chr11 16352521 16352816 -105491040 - B4 SINE B4 0 292 7 4 709 33320 46 13 30 chr11 16352861 16357404 -105486452 + L1Md_F LINE L1 415 4934 -949 4 709 228 183 46 77 chr11 16357404 16357469 -105486387 - RMER20A LTR ERVK -268 248 186 4 709 33320 46 13 30 chr11 16357469 16358123 -105485733 + L1Md_F LINE L1 4935 5586 -297 4 709 8120 42 1 4 chr11 16358124 16359121 -105484735 + L1Md_F2 LINE L1 5588 6581 -1 4 709 468 0 0 0 chr11 16360190 16360242 -105483614 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 709 703 309 131 31 chr11 16360342 16360762 -105483094 - Lx9 LINE L1 -312 7332 6871 4 709 532 296 153 9 chr11 16360757 16360985 -105482871 - Lx9 LINE L1 -1026 6618 6358 4 709 423 0 0 0 chr11 16361001 16361048 -105482808 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 709 1225 206 29 0 chr11 16363258 16363574 -105480282 + L1_Mur3 LINE L1 892 1216 -6512 4 709 5246 184 67 126 chr11 16363602 16364381 -105479475 + L1_Mur3 LINE L1 1554 2337 -3543 4 709 1008 95 0 0 chr11 16364381 16364518 -105479338 + B1_Mus2 SINE Alu 9 145 -2 4 709 5246 184 67 126 chr11 16364518 16365333 -105478523 + L1_Mur3 LINE L1 2338 3160 -2720 4 709 396 0 0 0 chr11 16365333 16365377 -105478479 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4 709 5246 184 67 126 chr11 16365377 16365482 -105478374 + L1_Mur3 LINE L1 3161 3281 -2599 4 709 856 239 203 18 chr11 16365498 16366058 -105477798 + Lx6 LINE L1 6455 7434 -26 4 709 2273 154 5 47 chr11 16366206 16366614 -105477242 - MTB_Mm LTR MaLR -12 395 5 4 709 352 253 12 0 chr11 16367355 16367438 -105476418 + MTD LTR MaLR 1 84 -335 4 709 5239 135 8 12 chr11 16367438 16368333 -105475523 - Lx3A LINE L1 -493 6488 5598 4 709 2389 90 0 0 chr11 16368329 16368663 -105475193 + Lx3A LINE L1 6506 6839 -142 4 709 16445 138 5 2 chr11 16368657 16371896 -105471960 - Lx LINE L1 -470 6184 2935 4 709 939 151 0 13 chr11 16371896 16372050 -105471806 - RMER10B LTR ERVL -246 152 1 4 709 2813 195 23 108 chr11 16372066 16372751 -105471105 + RMER20B LTR ERVK 1 627 0 4 709 546 226 40 0 chr11 16372751 16372860 -105470996 - ORR1C1 LTR MaLR -111 267 154 4 709 832 181 189 16 chr11 16372860 16372882 -105470974 + ORR1B1 LTR MaLR 1 22 -372 4 709 501 17 0 0 chr11 16372882 16372940 -105470916 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 709 832 181 189 16 chr11 16372940 16373108 -105470748 + ORR1B1 LTR MaLR 23 224 -170 4 709 3148 37 0 0 chr11 16373108 16373483 -105470373 - L1Md_T LINE L1 -1 6581 6207 4 709 1155 14 0 0 chr11 16373486 16373624 -105470232 + L1_Mm LINE L1 5024 5161 -722 4 709 1230 114 0 0 chr11 16373624 16373800 -105470056 + ORR1B1 LTR MaLR 211 386 -8 4 709 860 148 6 119 chr11 16373807 16373983 -105469873 - ORR1C1 LTR MaLR -222 156 1 4 709 1089 53 0 0 chr11 16374323 16374456 -105469400 + B1_Mus2 SINE Alu 2 134 -13 4 709 180 0 0 0 chr11 16374456 16374476 -105469380 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 709 602 218 263 0 chr11 16374629 16374808 -105469048 + URR1A DNA MER1_type 1 226 0 4 709 223 47 44 44 chr11 16375247 16375292 -105468564 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 4 709 284 196 21 38 chr11 16375821 16375935 -105467921 + L1MA4 LINE L1 6145 6255 -45 4 709 4985 119 36 8 chr11 16376246 16377027 -105466829 + Lx3B LINE L1 6171 6973 0 4 709 300 27 0 0 chr11 16377908 16377945 -105465911 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 709 536 308 44 19 chr11 16378280 16378439 -105465417 + RSINE1 SINE B4 3 165 0 4 709 506 319 14 0 chr11 16378481 16378622 -105465234 - B3A SINE B2 -55 143 1 4 709 284 345 67 89 chr11 16378802 16379117 -105464739 - LTR87 LTR ERVL? 0 624 317 4 88 29491 78 3 13 chr11 16379132 16384016 -105459840 + L1Md_F LINE L1 590 5394 -489 5 710 5540 69 0 8 chr11 16384016 16384735 -105459121 + L1Md_F2 LINE L1 5856 6568 -14 5 710 379 250 31 44 chr11 16384735 16384794 -105459062 + L1MD LINE L1 5424 5480 -2515 5 710 378 269 116 16 chr11 16385413 16385534 -105458322 - MTD LTR MaLR -1 378 246 5 710 419 322 58 66 chr11 16385540 16385938 -105457918 + RLTR12B LTR ERVK 9 289 -239 5 710 472 307 44 99 chr11 16386025 16386316 -105457540 - MTD LTR MaLR -151 268 1 5 710 21 0 0 0 chr11 16386394 16386415 -105457441 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 32 57 0 0 chr11 16386629 16386682 -105457174 + AT_rich Low_complexity Low_complexity 1 53 0 5 710 3332 47 0 21 chr11 16386966 16387397 -105456459 + L1Md_F2 LINE L1 6161 6582 0 5 710 2500 130 8 0 chr11 16388438 16388816 -105455040 + Lx LINE L1 6274 6654 0 5 710 519 240 19 46 chr11 16390252 16390413 -105453443 + Lx8 LINE L1 6878 7023 -450 5 710 360 0 0 0 chr11 16390934 16390974 -105452882 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 710 2801 89 13 5 chr11 16391070 16391467 -105452389 + MTB LTR MaLR 1 400 0 5 710 2126 276 118 30 chr11 16391519 16392979 -105450877 - Lx9 LINE L1 -1598 6046 4363 5 710 2268 89 84 22 chr11 16392979 16392994 -105450862 - L1_Mus3 LINE L1 -18 6620 6612 5 710 473 0 18 0 chr11 16392994 16393051 -105450805 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 710 2268 89 84 22 chr11 16393051 16393391 -105450465 - L1_Mus3 LINE L1 -27 6611 6243 5 710 2126 256 102 43 chr11 16393391 16393728 -105450128 - Lx9 LINE L1 -1485 4362 4014 5 710 1380 122 108 12 chr11 16393782 16394032 -105449824 - ORR1A2 LTR MaLR -3 324 51 5 710 3393 66 26 0 chr11 16394160 16394612 -105449244 - L1_Mus1 LINE L1 -1 6566 6103 5 710 897 215 98 47 chr11 16395370 16395604 -105448252 + MTE2b LTR MaLR 134 379 0 5 710 1465 296 53 39 chr11 16395631 16396123 -105447733 + MTE2b-int LTR MaLR 1 499 -1081 5 710 2584 213 84 20 chr11 16396163 16396820 -105447036 + MERVL_2A-int LTR ERVL 1 699 -5062 5 710 263 222 72 27 chr11 16397184 16397295 -105446561 + L1M2 LINE L1 3668 3783 -2097 5 710 415 191 180 0 chr11 16397311 16397400 -105446456 + B1_Mur2 SINE Alu 2 106 -43 5 710 1960 163 100 0 chr11 16397400 16397749 -105446107 - ORR1C2 LTR MaLR 0 384 1 5 710 307 235 125 125 chr11 16397749 16397771 -105446085 + PB1D7 SINE Alu 96 113 -7 5 710 303 287 112 37 chr11 16397771 16398203 -105445653 + L1M2 LINE L1 3820 4279 -1598 5 710 352 187 80 0 chr11 16398214 16398289 -105445567 + ORR1D1 LTR MaLR 10 90 -284 5 710 1023 235 43 104 chr11 16398288 16398306 -105445550 + ORR1D1-int LTR MaLR 307 324 -1046 5 710 2899 75 24 7 chr11 16398306 16398720 -105445136 - BGLII LTR ERVK 0 421 1 5 710 1023 235 43 104 chr11 16398720 16399048 -105444808 + ORR1D1-int LTR MaLR 325 632 -738 5 710 195 146 0 0 chr11 16399055 16399096 -105444760 + (C)n Simple_repeat Simple_repeat 1 41 0 5 710 894 245 22 31 chr11 16399112 16399335 -105444521 + ORR1D1-int LTR MaLR 637 857 -513 5 710 739 216 226 154 chr11 16399430 16399922 -105443934 + MT2A LTR ERVL 5 531 -2 5 710 210 319 204 16 chr11 16399942 16400133 -105443723 - L2a LINE L2 -1 3425 3199 5 710 327 307 77 39 chr11 16401363 16401519 -105442337 + MLT1A1 LTR MaLR 247 408 0 5 710 192 197 20 7 chr11 16402706 16402760 -105441096 + MIR SINE MIR 96 152 -56 5 710 390 250 175 1 chr11 16402966 16403108 -105440748 + MLT1A1 LTR MaLR 202 408 0 5 710 317 238 62 0 chr11 16404179 16404259 -105439597 + B3A SINE B2 8 92 -106 5 710 208 147 0 0 chr11 16405091 16405125 -105438731 + (A)n Simple_repeat Simple_repeat 1 34 0 5 710 1881 179 86 16 chr11 16405528 16405914 -105437942 + MTC LTR MaLR 1 413 -8 5 710 423 309 49 0 chr11 16409140 16409263 -105434593 + ID_B1 SINE B4 96 224 0 5 710 2902 82 2 15 chr11 16409492 16409887 -105433969 + MTA_Mm LTR MaLR 3 392 -4 5 710 1208 54 0 0 chr11 16409887 16410034 -105433822 + B1_Mm SINE Alu 1 147 0 5 710 374 269 0 9 chr11 16410484 16410589 -105433267 - ID4_ SINE ID -39 113 12 5 710 440 278 108 23 chr11 16410743 16410957 -105432899 - L1MA6 LINE L1 -438 5862 5631 5 710 808 278 125 34 chr11 16410970 16411103 -105432753 + L1MA6 LINE L1 5476 5612 -732 5 710 1569 241 29 33 chr11 16411103 16411524 -105432332 - MTD LTR MaLR 0 419 1 5 710 808 278 125 34 chr11 16411524 16412064 -105431792 + L1MC2 LINE L1 5613 6210 -134 5 710 831 172 7 0 chr11 16412446 16412591 -105431265 + B1_Mur3 SINE Alu 2 147 -2 5 710 7404 55 0 3 chr11 16412714 16414266 -105429590 - L1Md_F2 LINE L1 -33 6549 5001 5 710 189 94 0 0 chr11 16416043 16416075 -105427781 + (A)n Simple_repeat Simple_repeat 1 32 0 5 710 26911 70 1 1 chr11 16417332 16421764 -105422092 - L1Md_F2 LINE L1 -878 5005 575 5 710 783 154 0 0 chr11 16421847 16421983 -105421873 + A-rich Low_complexity Low_complexity 2 137 0 5 710 5224 118 25 2 chr11 16422452 16423156 -105420700 - Lx2 LINE L1 -14 6983 6271 5 710 414 0 0 0 chr11 16423156 16423202 -105420654 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 710 5224 118 25 2 chr11 16423202 16423305 -105420551 - Lx2 LINE L1 -727 6270 6160 5 710 3902 116 91 4 chr11 16423308 16424295 -105419561 + Lx2 LINE L1 5060 6152 -845 5 710 1983 177 78 15 chr11 16424433 16424829 -105419027 - MTC LTR MaLR 0 421 1 5 710 897 10 0 0 chr11 16425685 16425787 -105418069 + (TTTC)n Simple_repeat Simple_repeat 4 105 0 5 710 1930 151 32 75 chr11 16425846 16426248 -105417608 + RLTR41 LTR ERV1 62 446 0 5 710 212 343 50 10 chr11 16426509 16426609 -105417247 + MIRb SINE MIR 118 221 -47 5 710 21 0 0 0 chr11 16427937 16427958 -105415898 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 389 307 18 7 chr11 16428693 16428804 -105415052 - PB1D7 SINE Alu -11 116 1 5 710 797 229 49 31 chr11 16428962 16429187 -105414669 + B4 SINE B4 1 229 -63 5 710 237 135 0 0 chr11 16429256 16429308 -105414548 + (A)n Simple_repeat Simple_repeat 1 52 0 5 710 735 311 87 10 chr11 16429355 16429839 -105414017 - L1M2 LINE L1 -1035 5108 4588 5 710 950 255 5 10 chr11 16429872 16430074 -105413782 - ORR1D2 LTR MaLR 0 370 170 5 710 3729 133 31 122 chr11 16430108 16430938 -105412918 + RMER6A LTR ERVK 2 756 0 5 710 731 265 12 6 chr11 16430938 16431109 -105412747 - ORR1D2 LTR MaLR -198 172 1 5 710 622 314 87 19 chr11 16431116 16431727 -105412129 + Lx7 LINE L1 5231 5903 -1793 5 710 572 310 150 12 chr11 16431849 16432195 -105411661 - MER99 DNA hAT? -436 395 2 5 710 286 250 0 73 chr11 16432358 16432440 -105411416 + B4A SINE B4 217 292 0 5 710 207 259 0 0 chr11 16432440 16432494 -105411362 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 710 21 57 0 0 chr11 16432685 16432720 -105411136 + AT_rich Low_complexity Low_complexity 1 35 0 5 710 425 255 41 171 chr11 16432949 16433195 -105410661 + B3 SINE B2 2 215 -1 5 710 194 0 39 0 chr11 16433338 16433364 -105410492 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 5 710 1972 188 112 26 chr11 16433784 16434275 -105409581 + Lx9 LINE L1 7087 7619 -25 5 710 22 0 0 0 chr11 16434287 16434309 -105409547 + AT_rich Low_complexity Low_complexity 1 22 0 5 710 272 284 115 27 chr11 16434894 16435051 -105408805 - MIR3 SINE MIR -40 168 2 5 710 25 65 0 0 chr11 16436608 16436654 -105407202 + AT_rich Low_complexity Low_complexity 1 46 0 5 710 720 64 0 0 chr11 16437631 16437725 -105406131 + (T)n Simple_repeat Simple_repeat 1 94 0 5 710 1142 42 21 0 chr11 16437725 16437869 -105405987 - B1_Mm SINE Alu 0 147 1 5 710 861 203 31 6 chr11 16438084 16438243 -105405613 + B3 SINE B2 2 164 -52 5 710 414 0 0 0 chr11 16438634 16438680 -105405176 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 710 2320 142 35 2 chr11 16438947 16439349 -105404507 - Lx4B LINE L1 -317 6741 6327 5 710 1220 206 50 32 chr11 16439349 16439690 -105404166 + Lx4B LINE L1 6711 7057 -1 5 710 474 18 0 0 chr11 16442123 16442178 -105401678 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 710 222 116 0 0 chr11 16442178 16442220 -105401636 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 710 824 149 0 6 chr11 16442238 16442413 -105401443 + CT-rich Low_complexity Low_complexity 1 174 0 5 710 183 361 48 20 chr11 16442762 16442909 -105400947 + L2a LINE L2 3221 3371 -55 5 710 401 230 145 14 chr11 16443023 16443230 -105400626 - L1MC2 LINE L1 -405 5939 5706 5 710 9087 49 1 0 chr11 16443377 16445179 -105398677 - L1Md_F2 LINE L1 -8 6574 4771 5 710 955 299 167 4 chr11 16445344 16445843 -105398013 + Lx8 LINE L1 6890 7469 -4 5 710 509 173 0 0 chr11 16448019 16448094 -105395762 + ID4 SINE ID 1 75 -8 5 710 33 0 0 0 chr11 16448345 16448378 -105395478 + AT_rich Low_complexity Low_complexity 1 33 0 5 710 387 0 0 0 chr11 16448497 16448540 -105395316 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 710 860 227 0 63 chr11 16450067 16450274 -105393582 + B3A SINE B2 2 195 -3 5 710 22 80 0 0 chr11 16451734 16451784 -105392072 + AT_rich Low_complexity Low_complexity 1 50 0 5 710 23 0 0 0 chr11 16451993 16452016 -105391840 + AT_rich Low_complexity Low_complexity 1 23 0 5 710 6707 218 31 27 chr11 16453067 16454631 -105389225 + Lx6 LINE L1 5538 7122 -338 5 710 3549 38 5 0 chr11 16454829 16455223 -105388633 - MTA_Mm LTR MaLR 0 396 1 5 710 924 203 147 30 chr11 16455484 16455663 -105388193 + Lx9 LINE L1 7303 7492 -152 5 710 2032 162 36 62 chr11 16455663 16456051 -105387805 - ORR1C1 LTR MaLR 0 378 1 5 710 924 203 147 30 chr11 16456051 16456170 -105387686 + Lx9 LINE L1 7493 7636 -8 5 710 328 266 13 0 chr11 16456286 16456365 -105387491 + ID4 SINE ID 2 81 -2 5 710 378 0 0 0 chr11 16456821 16456863 -105386993 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 710 420 97 0 0 chr11 16456863 16456924 -105386932 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 710 625 302 151 29 chr11 16456938 16457177 -105386679 - B4A SINE B4 -23 269 2 5 710 726 43 0 0 chr11 16457527 16457621 -105386235 + (TG)n Simple_repeat Simple_repeat 2 95 0 5 710 195 42 0 0 chr11 16458345 16458369 -105385487 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 710 525 44 0 0 chr11 16458369 16458437 -105385419 + (TTTTC)n Simple_repeat Simple_repeat 5 72 0 5 710 1312 14 0 36 chr11 16458497 16458857 -105384999 + (TG)n Simple_repeat Simple_repeat 1 347 0 5 710 402 167 0 0 chr11 16461532 16461616 -105382240 + CT-rich Low_complexity Low_complexity 1 84 0 5 710 4049 216 81 25 chr11 16461623 16463385 -105380471 - Lx7 LINE L1 0 7696 4855 5 710 2488 109 112 10 chr11 16463384 16463494 -105380362 + L1_Mus3 LINE L1 5538 5677 -206 5 710 4141 37 0 0 chr11 16463494 16463950 -105379906 - L1Md_T LINE L1 0 6582 6127 6 710 4621 121 34 24 chr11 16463950 16464822 -105379034 + L1_Mus3 LINE L1 5678 6624 -14 5 710 3272 171 78 25 chr11 16464822 16465720 -105378136 + L1Md_F LINE L1 258 1204 -5356 6 710 9591 97 13 1 chr11 16465707 16467024 -105376832 - L1VL1 LINE L1 -163 5720 4389 6 710 4599 18 4 0 chr11 16467024 16467515 -105376341 + MT2_Mm LTR ERVL 1 493 0 6 710 3577 20 0 0 chr11 16467515 16467917 -105375939 + MERVL-int LTR ERVL 1 402 -5083 6 710 40656 15 10 0 chr11 16467895 16472393 -105371463 + MERVL-int LTR ERVL 824 5364 -121 6 710 370 132 12 50 chr11 16472393 16472473 -105371383 + ORR1A3-int LTR MaLR 564 640 -1323 6 710 322 0 0 0 chr11 16472473 16472511 -105371345 + MERVL-int LTR ERVL 5448 5485 0 6 710 4599 18 4 0 chr11 16472511 16473002 -105370854 + MT2_Mm LTR ERVL 1 493 0 6 710 21945 94 11 2 chr11 16473002 16477138 -105366718 - L1VL1 LINE L1 -1490 4393 222 6 710 6421 71 1 36 chr11 16477140 16477972 -105365884 + L1_Mus2 LINE L1 5764 6566 0 6 710 255 79 0 0 chr11 16477998 16478036 -105365820 + (A)n Simple_repeat Simple_repeat 1 38 0 6 710 3406 191 82 22 chr11 16478115 16478240 -105365616 - L1_Mur3 LINE L1 -1026 4854 4728 6 710 243 0 0 0 chr11 16478240 16478267 -105365589 + (ATG)n Simple_repeat Simple_repeat 1 27 0 6 710 3406 191 82 22 chr11 16478267 16478984 -105364872 - L1_Mur3 LINE L1 -1153 4727 3963 6 710 1531 204 58 20 chr11 16478973 16479373 -105364483 - L1_Mur3 LINE L1 -3859 2021 1607 6 710 5259 152 40 10 chr11 16479380 16480429 -105363427 - Lx4B LINE L1 0 7058 5875 6 710 3751 157 33 0 chr11 16480394 16481031 -105362825 + Lx4B LINE L1 5215 5872 -5 6 710 2313 199 27 8 chr11 16481158 16481639 -105362217 - RLTR16 LTR ERVK -12 493 4 6 710 776 222 22 0 chr11 16481655 16481840 -105362016 - L1_Mur3 LINE L1 -4257 1623 1435 6 710 554 167 0 9 chr11 16481847 16481956 -105361900 + CT-rich Low_complexity Low_complexity 3 110 0 6 710 388 236 88 48 chr11 16481965 16482112 -105361744 - L1_Mur3 LINE L1 -4468 1412 1260 6 710 4341 104 43 7 chr11 16482112 16482710 -105361146 - Lx2 LINE L1 0 6997 6378 6 710 547 114 0 0 chr11 16482710 16482789 -105361067 + Lx2 LINE L1 5744 5822 -1175 6 710 3222 148 44 15 chr11 16482803 16483344 -105360512 - Lx2B LINE L1 -122 6878 6322 6 710 1417 226 85 20 chr11 16483866 16484267 -105359589 - RMER5 LTR ERV1 -75 459 33 6 710 5024 145 38 23 chr11 16485173 16486069 -105357787 - Lx2 LINE L1 -142 6855 5947 6 710 407 51 101 0 chr11 16486078 16486157 -105357699 + T-rich Low_complexity Low_complexity 2 88 0 6 710 25 65 0 0 chr11 16486480 16486526 -105357330 + AT_rich Low_complexity Low_complexity 1 46 0 6 710 420 82 0 0 chr11 16486667 16486728 -105357128 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 710 1493 66 6 6 chr11 16486913 16487096 -105356760 - B2_Mm2 SINE B2 -9 186 4 6 710 216 97 0 0 chr11 16487951 16487982 -105355874 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 710 1279 55 0 0 chr11 16487989 16488134 -105355722 - B1_Mm SINE Alu -1 146 2 6 710 29 28 0 0 chr11 16488255 16488291 -105355565 + AT_rich Low_complexity Low_complexity 1 36 0 6 710 222 262 16 0 chr11 16488307 16488368 -105355488 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 710 1037 113 21 7 chr11 16488569 16488712 -105355144 - B1_Mus1 SINE Alu -1 147 3 6 710 32 0 0 0 chr11 16488811 16488843 -105355013 + AT_rich Low_complexity Low_complexity 1 32 0 6 710 971 181 14 0 chr11 16488844 16488988 -105354868 - B1_Mur3 SINE Alu -2 147 2 6 710 240 275 0 31 chr11 16489380 16489509 -105354347 + L1MDa LINE L1 1617 1697 -5247 6 710 364 262 12 17 chr11 16489563 16489688 -105354168 + L1_Mur2 LINE L1 2498 2627 -3259 6 710 243 336 7 40 chr11 16489671 16489820 -105354036 + L1_Rod LINE L1 2765 2908 -2939 6 710 434 282 148 16 chr11 16489882 16490083 -105353773 + L1MB3 LINE L1 5768 5994 -189 6 710 270 0 0 0 chr11 16490083 16490113 -105353743 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 6 710 434 282 148 16 chr11 16490113 16490221 -105353635 + L1MB3 LINE L1 5995 6117 -66 6 710 22 56 0 0 chr11 16490612 16490648 -105353208 + AT_rich Low_complexity Low_complexity 1 36 0 6 710 691 235 18 31 chr11 16490693 16490921 -105352935 + RMER17C LTR ERVK 2 226 -184 6 710 345 47 0 0 chr11 16492340 16492383 -105351473 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 710 606 105 0 0 chr11 16492383 16492488 -105351368 + (GA)n Simple_repeat Simple_repeat 2 106 0 6 710 793 173 141 126 chr11 16492590 16492994 -105350862 - RMER17C LTR ERVK 0 410 1 6 710 860 53 0 0 chr11 16493101 16493214 -105350642 - B1_Mus2 SINE Alu -34 113 1 6 710 310 229 16 24 chr11 16493114 16493239 -105350617 - ORR1B1-int LTR MaLR -762 747 624 6 710 378 0 0 0 chr11 16493539 16493581 -105350275 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 710 207 0 0 0 chr11 16493765 16493788 -105350068 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 710 384 320 122 72 chr11 16493854 16494076 -105349780 - MTEa LTR MaLR 0 379 147 6 710 261 0 0 0 chr11 16494670 16494699 -105349157 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 710 279 0 0 0 chr11 16494699 16494729 -105349127 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 710 279 0 0 0 chr11 16494729 16494759 -105349097 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 710 1247 259 98 19 chr11 16494772 16495182 -105348674 - Lx8 LINE L1 -39 7434 6993 6 710 836 192 29 11 chr11 16495440 16495614 -105348242 + RLTR41 LTR ERV1 1 177 -269 6 710 1436 147 44 70 chr11 16495644 16495914 -105347942 + RLTR41 LTR ERV1 142 404 -42 6 710 656 82 319 52 chr11 16496004 16496019 -105347837 - B1_Mm SINE Alu 0 147 138 6 710 249 57 0 0 chr11 16496019 16496054 -105347802 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 710 656 82 319 52 chr11 16496054 16496154 -105347702 - B1_Mm SINE Alu -10 137 1 6 710 4639 102 142 94 chr11 16497498 16498362 -105345494 + RMER17A2 LTR ERVK 1 906 0 6 710 2197 112 72 0 chr11 16498651 16498956 -105344900 - ORR1A2 LTR MaLR 0 327 1 6 710 7046 112 5 6 chr11 16498960 16500000 -105343856 - ORR1A2-int LTR MaLR -4 1959 921 6 710 3837 150 117 18 chr11 16500000 16500175 -105343681 - ORR1A2-int LTR MaLR -1043 920 743 1 710 7426 82 27 2 chr11 16500175 16501173 -105342683 + RLTR13D5 LTR ERVK 1 1023 0 2 710 3837 150 117 18 chr11 16501173 16501833 -105342023 - ORR1A2-int LTR MaLR -1221 742 2 1 710 873 109 8 0 chr11 16501862 16501990 -105341866 - ORR1A2 LTR MaLR -198 129 1 1 710 226 307 11 74 chr11 16502411 16502506 -105341350 - MLT1A1 LTR MaLR -312 96 8 3 710 249 57 0 0 chr11 16502789 16502824 -105341032 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 710 445 302 31 13 chr11 16503219 16503373 -105340483 - MER5A DNA MER1_type -22 167 9 5 710 30 45 0 0 chr11 16503501 16503545 -105340311 + AT_rich Low_complexity Low_complexity 1 44 0 6 710 497 259 116 18 chr11 16503722 16503858 -105339998 - L1M2 LINE L1 -665 5635 5498 7 710 285 29 0 0 chr11 16503858 16503892 -105339964 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 710 497 267 95 55 chr11 16503892 16504305 -105339551 - L1M2 LINE L1 -800 5497 5027 7 710 35 24 0 0 chr11 16504744 16504786 -105339070 + AT_rich Low_complexity Low_complexity 1 42 0 9 710 237 65 0 0 chr11 16504886 16504917 -105338939 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 710 887 166 28 0 chr11 16505062 16505207 -105338649 + B1_Mur4 SINE Alu 2 150 0 1 710 1760 300 27 37 chr11 16505368 16506177 -105337679 - Lx9 LINE L1 -385 7259 6459 1 710 434 280 0 0 chr11 16506316 16506491 -105337365 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 1 710 6437 80 39 3 chr11 16507691 16508562 -105335294 - RLTR13D6 LTR ERVK 0 902 1 1 710 2413 52 62 0 chr11 16508787 16509093 -105334763 + ORR1A2 LTR MaLR 1 325 -2 1 710 197 325 102 34 chr11 16509598 16509716 -105334140 - MIRb SINE MIR -107 161 36 1 710 187 244 0 0 chr11 16510532 16510573 -105333283 + L2 LINE L2 2772 2812 -607 1 710 197 416 29 0 chr11 16510595 16510732 -105333124 + L2 LINE L2 2882 3022 -397 1 710 290 341 57 16 chr11 16510892 16511051 -105332805 + MIRc SINE MIR 85 241 -21 1 710 280 349 74 34 chr11 16511276 16511451 -105332405 - RLTR17 LTR ERVK -269 423 242 1 710 207 0 0 0 chr11 16511578 16511601 -105332255 + (A)n Simple_repeat Simple_repeat 1 23 0 2 710 317 315 43 20 chr11 16513231 16513369 -105330487 + RSINE1 SINE B4 64 276 -16 2 710 395 208 0 8 chr11 16513369 16513500 -105330356 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 710 308 239 13 90 chr11 16513674 16513713 -105330143 - ID SINE ID -149 75 40 2 710 2316 130 158 19 chr11 16513713 16514136 -105329720 - RLTR45 LTR ERVK 0 482 1 2 710 308 239 13 90 chr11 16514136 16514174 -105329682 - ID SINE ID -185 39 4 2 710 250 381 67 32 chr11 16514284 16514566 -105329290 - LTR16B2 LTR ERVL -45 417 126 2 710 397 258 10 0 chr11 16514815 16514912 -105328944 - L1M2 LINE L1 -2592 4250 4153 2 88 217 236 18 18 chr11 16515041 16515097 -105328759 + CT-rich Low_complexity Low_complexity 4 59 0 2 711 382 325 87 23 chr11 16515183 16515668 -105328188 - L1M2 LINE L1 -3009 3836 3321 2 711 393 302 85 0 chr11 16515838 16516027 -105327829 - L1M2 LINE L1 -4258 2591 2387 2 711 261 0 0 0 chr11 16516055 16516084 -105327772 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 711 707 290 28 33 chr11 16516169 16516383 -105327473 - B4A SINE B4 -74 218 6 2 711 3518 234 74 21 chr11 16516823 16517670 -105326186 + RMER13B LTR ERVK 15 906 -2 3 711 2553 148 42 0 chr11 16519108 16519512 -105324344 - MTC LTR MaLR 0 421 1 3 711 4168 173 74 24 chr11 16519512 16520373 -105323483 - MTC-int LTR MaLR 0 1258 355 3 711 246 342 43 6 chr11 16520498 16520660 -105323196 - L1MA9 LINE L1 -323 5989 5822 3 711 7148 79 9 0 chr11 16520695 16522167 -105321689 - L1_Mus2 LINE L1 0 6566 5082 3 711 4952 108 0 0 chr11 16522165 16522914 -105320942 + L1_Mus2 LINE L1 4340 5088 -795 3 711 802 268 29 14 chr11 16522924 16523132 -105320724 - B3 SINE B2 -5 211 1 3 711 323 273 50 40 chr11 16523318 16523717 -105320139 + L1MCa LINE L1 1340 1829 -5299 3 711 669 284 48 99 chr11 16523824 16524156 -105319700 + ORR1E LTR MaLR 6 320 -39 3 711 6732 102 13 39 chr11 16525219 16526315 -105317541 + Lx LINE L1 5587 6653 -1 3 711 21 0 0 0 chr11 16526394 16526415 -105317441 + AT_rich Low_complexity Low_complexity 1 21 0 3 711 1103 297 49 40 chr11 16526603 16527000 -105316856 + MTD LTR MaLR 1 417 -2 3 711 321 342 37 62 chr11 16527374 16527536 -105316320 - RSINE1 SINE B4 -6 159 2 4 711 1821 194 101 10 chr11 16529352 16529738 -105314118 + MTC LTR MaLR 1 421 0 4 711 718 276 111 19 chr11 16529739 16529878 -105313978 + Lx8 LINE L1 6808 6970 -503 4 711 273 57 0 0 chr11 16529878 16529913 -105313943 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 711 718 276 111 19 chr11 16529913 16530043 -105313813 + Lx8 LINE L1 6971 7102 -371 4 711 8339 57 10 9 chr11 16530239 16532086 -105311770 - L1Md_F2 LINE L1 0 6582 4745 4 711 248 364 0 0 chr11 16533225 16533291 -105310565 + MER2 DNA MER2_type 3 68 -277 4 711 582 276 174 13 chr11 16533342 16533566 -105310290 + MER2 DNA MER2_type 83 342 -3 4 711 1202 47 18 6 chr11 16533613 16533784 -105310072 + (GAGAA)n Simple_repeat Simple_repeat 4 176 0 4 711 597 289 0 0 chr11 16533784 16533905 -105309951 - RSINE1 SINE B4 -44 121 1 4 711 21 57 0 0 chr11 16534084 16534119 -105309737 + AT_rich Low_complexity Low_complexity 1 35 0 4 711 207 0 0 0 chr11 16534945 16534968 -105308888 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 711 1115 92 90 23 chr11 16536261 16536438 -105307418 - B2_Mm1t SINE B2 -4 189 1 5 711 345 200 27 91 chr11 16536647 16536834 -105307022 + T-rich Low_complexity Low_complexity 5 179 0 5 711 301 316 0 40 chr11 16538454 16538553 -105305303 + B4A SINE B4 3 97 -195 5 711 15035 107 15 10 chr11 16538775 16542021 -105301835 + L1VL2 LINE L1 613 3896 -2247 5 711 645 80 0 0 chr11 16542021 16542109 -105301747 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 5 711 255 109 15 59 chr11 16542111 16542179 -105301677 + CT-rich Low_complexity Low_complexity 3 67 0 5 711 3267 143 2 0 chr11 16544023 16544583 -105299273 + L1_Mur2 LINE L1 4400 4960 -917 5 711 2411 103 16 158 chr11 16544584 16544702 -105299154 - MT2C_Mm LTR ERVL -58 417 292 5 711 684 0 0 0 chr11 16544702 16544778 -105299078 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 711 2411 103 16 158 chr11 16544778 16544875 -105298981 - MT2C_Mm LTR ERVL -184 291 202 5 711 1647 127 77 187 chr11 16544875 16545409 -105298447 + IAPLTR2_Mm LTR ERVK 1 475 0 5 711 2411 103 16 158 chr11 16545409 16545678 -105298178 - MT2C_Mm LTR ERVL -274 201 2 5 711 347 204 0 55 chr11 16546109 16546218 -105297638 + Lx9 LINE L1 7535 7637 -7 6 711 26 0 0 0 chr11 16546218 16546244 -105297612 + AT_rich Low_complexity Low_complexity 1 26 0 6 711 365 291 86 26 chr11 16546413 16546565 -105297291 + RSINE1 SINE B4 3 163 -2 6 711 287 348 0 0 chr11 16546926 16546995 -105296861 + tRNA-Ala-GCY_ tRNA tRNA 4 72 -3 6 711 441 0 0 0 chr11 16547293 16547342 -105296514 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 711 21 57 0 0 chr11 16547468 16547503 -105296353 + AT_rich Low_complexity Low_complexity 1 35 0 6 711 426 283 35 0 chr11 16547635 16547748 -105296108 - PB1D10 SINE Alu 0 117 1 6 711 267 259 53 62 chr11 16547899 16548162 -105295694 + L1M4 LINE L1 5062 5389 -757 6 711 713 299 66 35 chr11 16548176 16548462 -105295394 + L1MA5 LINE L1 5495 5788 -512 6 711 423 0 0 0 chr11 16548462 16548509 -105295347 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 711 713 299 66 35 chr11 16548509 16548645 -105295211 + L1MA5 LINE L1 5789 5930 -370 6 711 612 217 8 8 chr11 16550769 16550899 -105292957 + RLTR11A2 LTR ERVK 319 448 -79 7 711 999 200 37 16 chr11 16551152 16551340 -105292516 - B3 SINE B2 0 216 25 7 711 572 344 59 28 chr11 16551344 16551598 -105292258 - B4A SINE B4 -26 266 5 7 711 388 322 118 30 chr11 16551782 16552019 -105291837 + MLT1C LTR MaLR 118 375 -92 7 711 1538 307 43 45 chr11 16552032 16552847 -105291009 - Lx8 LINE L1 -4 7469 6657 7 711 1093 217 176 168 chr11 16552847 16553306 -105290550 + MT2A LTR ERVL 1 463 -70 7 711 773 316 48 12 chr11 16553374 16553730 -105290126 - Lx8 LINE L1 -1024 6672 6316 7 711 261 367 50 0 chr11 16554358 16554478 -105289378 + Lx8 LINE L1 7104 7229 -244 7 711 189 0 0 0 chr11 16555067 16555088 -105288768 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 711 2989 215 45 85 chr11 16556129 16556528 -105287328 - Lx7 LINE L1 0 7696 7344 7 711 1058 135 6 0 chr11 16556528 16556706 -105287150 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 7 711 2989 215 45 85 chr11 16556706 16557215 -105286641 - Lx7 LINE L1 -353 7343 6824 7 711 1136 76 94 50 chr11 16557731 16557912 -105285944 + B2_Mm2 SINE B2 1 189 -6 8 711 28 0 0 0 chr11 16558059 16558087 -105285769 + AT_rich Low_complexity Low_complexity 1 28 0 8 711 382 339 0 0 chr11 16558333 16558454 -105285402 + GA-rich Low_complexity Low_complexity 3 123 0 8 711 258 43 0 0 chr11 16558561 16558607 -105285249 - L1_Mus4 LINE L1 0 6636 6591 8 711 288 0 0 0 chr11 16559290 16559322 -105284534 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 711 2281 179 32 79 chr11 16559322 16559906 -105283950 + RLTR31_Mm LTR ERVK 5 561 0 8 711 590 200 20 17 chr11 16560852 16561212 -105282644 + (TG)n Simple_repeat Simple_repeat 1 361 0 8 711 455 292 88 91 chr11 16561701 16562052 -105281804 + L1M4c LINE L1 1160 1548 -4915 8 711 433 316 55 114 chr11 16562098 16562405 -105281451 + B4A SINE B4 2 290 -2 8 711 533 64 13 0 chr11 16562424 16562502 -105281354 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 711 535 225 23 30 chr11 16562583 16562716 -105281140 - MTD LTR MaLR -287 132 1 9 711 340 329 62 6 chr11 16562719 16562881 -105280975 + L1M4c LINE L1 5455 5625 -757 8 711 621 77 0 78 chr11 16562903 16563044 -105280812 + G-rich Low_complexity Low_complexity 5 134 0 9 711 825 300 92 3 chr11 16563085 16563456 -105280400 + Lx8 LINE L1 6453 6856 -617 9 711 1845 272 66 23 chr11 16563680 16564286 -105279570 - Lx8 LINE L1 -349 7124 6493 9 711 1866 190 63 0 chr11 16564326 16564673 -105279183 + ORR1C1 LTR MaLR 3 371 -7 9 711 232 225 28 14 chr11 16564750 16564822 -105279034 - L1MC LINE L1 -591 5753 5681 9 711 522 272 0 46 chr11 16564876 16565007 -105278849 - B1_Mur4 SINE Alu -15 135 11 9 711 362 349 7 43 chr11 16564893 16565031 -105278825 - ID_B1 SINE B4 -26 198 66 9 711 515 289 74 14 chr11 16565032 16565316 -105278540 - L1MC LINE L1 -757 5576 5276 9 711 390 149 0 0 chr11 16565388 16565475 -105278381 + (TC)n Simple_repeat Simple_repeat 2 88 0 9 711 6871 42 11 3 chr11 16565606 16566518 -105277338 - L1Md_F2 LINE L1 0 6582 5690 9 711 1344 270 61 19 chr11 16566533 16566892 -105276964 + MTD LTR MaLR 7 380 -39 1 711 180 0 0 0 chr11 16566920 16566940 -105276916 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 711 323 203 167 24 chr11 16566989 16567115 -105276741 - L1MC LINE L1 -1197 4949 4806 9 711 1180 244 59 4 chr11 16567126 16567214 -105276642 + MTD LTR MaLR 18 119 -300 1 711 314 23 0 23 chr11 16567214 16567258 -105276598 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 711 1180 244 59 4 chr11 16567258 16567441 -105276415 + MTD LTR MaLR 120 304 -115 1 711 185 0 0 39 chr11 16567472 16567498 -105276358 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 711 570 251 119 28 chr11 16567520 16567914 -105275942 - L1MC LINE L1 -1334 4812 4383 9 711 225 231 0 30 chr11 16567952 16568019 -105275837 - Lx7 LINE L1 -20 7676 7612 1 711 311 269 42 63 chr11 16568391 16568534 -105275322 + HAL1-2a_MD LINE L1 2369 2508 -516 1 711 21 89 0 0 chr11 16568772 16568828 -105275028 + AT_rich Low_complexity Low_complexity 1 56 0 1 711 319 407 74 33 chr11 16570773 16571406 -105272450 + L2a LINE L2 2566 3231 -195 1 711 330 360 24 8 chr11 16571662 16571788 -105272068 - ORR1E LTR MaLR -214 145 18 1 711 1435 258 77 94 chr11 16572354 16572897 -105270959 - RMER19C LTR ERVK -1 610 77 1 711 775 255 71 0 chr11 16572960 16573156 -105270700 + B3 SINE B2 3 212 -4 1 711 418 83 0 0 chr11 16573156 16573216 -105270640 + L1_Mm LINE L1 5172 5231 -652 1 711 23 0 0 0 chr11 16573547 16573570 -105270286 + AT_rich Low_complexity Low_complexity 1 23 0 1 711 14298 162 13 11 chr11 16574194 16574918 -105268938 + Lx LINE L1 3102 3849 -2028 1 711 261 0 0 0 chr11 16574918 16574947 -105268909 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 711 14298 162 13 11 chr11 16574947 16575825 -105268031 + Lx LINE L1 3850 4731 -1146 1 711 2250 169 14 50 chr11 16575825 16576261 -105267595 - RLTR9B2 LTR ERVK 0 420 1 1 711 14298 139 11 10 chr11 16576261 16578192 -105265664 + Lx LINE L1 4732 6654 0 1 711 265 368 0 93 chr11 16578208 16578358 -105265498 + RSINE1 SINE B4 8 143 -22 1 711 557 277 110 22 chr11 16578698 16579015 -105264841 + L1M5 LINE L1 4323 4667 -1479 1 711 589 106 12 0 chr11 16579209 16579294 -105264562 - B2_Mm1t SINE B2 -14 179 94 1 711 609 244 5 174 chr11 16579292 16579343 -105264513 + B4 SINE B4 50 81 -211 1 711 826 194 0 7 chr11 16579343 16579488 -105264368 + B1_Mur2 SINE Alu 5 148 -1 1 711 609 244 5 174 chr11 16579488 16579649 -105264207 + B4 SINE B4 82 226 -66 1 711 237 203 101 0 chr11 16579705 16579774 -105264082 + L1M5 LINE L1 4765 4840 -1306 1 711 243 175 0 0 chr11 16579850 16579907 -105263949 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 711 248 226 0 19 chr11 16579907 16579961 -105263895 + G-rich Low_complexity Low_complexity 4 56 0 1 711 33 0 0 0 chr11 16579986 16580019 -105263837 + AT_rich Low_complexity Low_complexity 1 33 0 1 711 343 216 52 0 chr11 16580019 16580116 -105263740 + L1M5 LINE L1 5081 5182 -964 1 711 210 349 56 9 chr11 16581632 16581739 -105262117 - PB1D10 SINE Alu -3 114 3 1 711 204 313 12 12 chr11 16581960 16582044 -105261812 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 711 316 390 81 6 chr11 16582096 16582269 -105261587 - B4A SINE B4 -104 188 3 1 711 255 320 10 39 chr11 16582735 16582839 -105261017 + MTE2b LTR MaLR 278 378 -1 1 711 291 269 104 25 chr11 16584388 16584590 -105259266 + L1MA8 LINE L1 5989 6206 -85 1 711 2051 144 66 16 chr11 16585355 16585793 -105258063 - Lx2 LINE L1 -712 6285 5826 1 711 4605 111 17 10 chr11 16585793 16586482 -105257374 + Lx2 LINE L1 6299 6992 -5 1 711 1696 246 26 28 chr11 16586775 16587310 -105256546 + L1_Rod LINE L1 3511 4044 -1803 1 711 258 176 53 96 chr11 16587307 16587401 -105256455 + Lx9 LINE L1 7367 7456 -188 1 711 720 91 0 0 chr11 16587402 16587512 -105256344 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 711 24 32 0 0 chr11 16587614 16587645 -105256211 + AT_rich Low_complexity Low_complexity 1 31 0 1 711 24 0 0 0 chr11 16588573 16588597 -105255259 + AT_rich Low_complexity Low_complexity 1 24 0 1 711 351 0 0 0 chr11 16588849 16588888 -105254968 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 711 39509 4 0 0 chr11 16588918 16594707 -105249149 - L1Md_A LINE L1 0 6582 792 1 711 417 250 4 4 chr11 16594804 16594917 -105248939 + Lx7 LINE L1 6578 6690 -783 1 711 192 170 0 0 chr11 16594926 16594979 -105248877 + A-rich Low_complexity Low_complexity 5 57 0 1 711 399 331 52 20 chr11 16595232 16595482 -105248374 + MER89-int LTR ERV1 1318 1575 -5226 1 711 295 281 48 10 chr11 16595679 16595783 -105248073 + MER89-int LTR ERV1 1728 1835 -4966 1 711 360 321 113 8 chr11 16596133 16596381 -105247475 + MER89-int LTR ERV1 2241 2514 -4287 1 711 434 296 0 17 chr11 16597173 16597290 -105246566 - PB1D10 SINE Alu -2 115 1 1 711 252 358 24 24 chr11 16597592 16597758 -105246098 + MER89-int LTR ERV1 3537 3702 -3099 1 711 432 0 0 0 chr11 16598182 16598230 -105245626 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 711 660 331 69 45 chr11 16598399 16598949 -105244907 + MER89-int LTR ERV1 4364 4926 -1875 1 711 254 319 93 36 chr11 16599190 16599437 -105244419 + MER89-int LTR ERV1 5227 5487 -1314 1 711 281 267 69 0 chr11 16599437 16599553 -105244303 + Lx9 LINE L1 4078 4201 -1939 1 711 411 229 97 0 chr11 16599555 16599658 -105244198 + L1_Rod LINE L1 5096 5200 -647 1 711 354 80 0 0 chr11 16599658 16599708 -105244148 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 711 411 229 97 0 chr11 16599708 16599748 -105244108 + L1_Rod LINE L1 5201 5252 -595 1 711 566 272 195 53 chr11 16599873 16600449 -105243407 + Lx9 LINE L1 5274 5917 -1727 1 711 2852 96 5 8 chr11 16600777 16601174 -105242682 - MTA_Mm LTR MaLR 0 396 1 1 711 192 329 61 37 chr11 16601974 16602056 -105241800 - L3 LINE CR1 -59 4430 4347 1 711 962 325 85 43 chr11 16603271 16604562 -105239294 + Lx8 LINE L1 1220 2580 -3267 1 711 1077 136 0 0 chr11 16604562 16604739 -105239117 + (GAAAA)n Simple_repeat Simple_repeat 3 179 0 1 711 962 310 73 44 chr11 16604739 16605388 -105238468 + Lx8 LINE L1 2563 3217 -2663 1 711 216 67 0 0 chr11 16605388 16605418 -105238438 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 711 962 312 75 44 chr11 16605418 16605635 -105238221 + Lx8 LINE L1 3218 3477 -2370 1 711 214 242 152 0 chr11 16605660 16605726 -105238130 + B3A SINE B2 18 93 -105 1 711 690 307 71 54 chr11 16605727 16606538 -105237318 + Lx8 LINE L1 5527 6354 -1119 1 711 1207 259 138 6 chr11 16606538 16606864 -105236992 + ORR1D2 LTR MaLR 1 369 -1 1 711 2020 299 55 8 chr11 16606870 16607601 -105236255 + Lx8 LINE L1 6357 7121 -352 1 711 231 268 0 0 chr11 16607601 16607698 -105236158 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 711 741 257 47 56 chr11 16609006 16609220 -105234636 + B3 SINE B2 1 212 -4 1 711 21 0 0 0 chr11 16609541 16609562 -105234294 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 1703 163 66 10 chr11 16609568 16609872 -105233984 - Lx4A LINE L1 -4 7054 6734 1 711 1190 158 26 10 chr11 16609879 16610071 -105233785 + MTC LTR MaLR 226 420 -1 1 711 297 0 0 0 chr11 16610181 16610214 -105233642 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1 711 255 61 0 0 chr11 16610407 16610440 -105233416 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 711 276 127 0 40 chr11 16610816 16610890 -105232966 + Lx4A LINE L1 6988 7058 0 1 711 634 288 11 63 chr11 16611514 16611703 -105232153 + B3A SINE B2 5 183 -15 1 711 8905 98 5 3 chr11 16612099 16614129 -105229727 + L1_Mus3 LINE L1 4605 6637 -1 1 711 427 330 59 118 chr11 16616773 16617350 -105226506 + L2b LINE L2 1932 2474 -945 1 711 294 29 0 0 chr11 16617470 16617505 -105226351 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 711 190 349 64 28 chr11 16618201 16618310 -105225546 + L2b LINE L2 3227 3339 -36 1 711 24 0 0 0 chr11 16618477 16618501 -105225355 + AT_rich Low_complexity Low_complexity 1 24 0 1 711 834 230 0 0 chr11 16618673 16618821 -105225035 - B1_Mur4 SINE Alu -1 149 2 1 711 701 316 122 72 chr11 16619144 16619550 -105224306 + MLT2B3 LTR ERVL 13 447 -107 1 711 1461 254 23 39 chr11 16619550 16619935 -105223921 + MTEb LTR MaLR 1 379 0 1 711 701 316 122 72 chr11 16619935 16620012 -105223844 + MLT2B3 LTR ERVL 448 520 -34 1 711 189 107 0 0 chr11 16620044 16620072 -105223784 + (CCTA)n Simple_repeat Simple_repeat 4 31 0 1 711 330 293 105 24 chr11 16620395 16620605 -105223251 - MER58B DNA MER1_type -36 305 79 1 711 614 304 103 12 chr11 16621110 16621353 -105222503 + B4A SINE B4 15 279 -13 1 711 498 108 0 0 chr11 16621402 16621476 -105222380 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 1 711 603 108 0 0 chr11 16621865 16621958 -105221898 + (TTCC)n Simple_repeat Simple_repeat 3 95 0 1 711 1652 257 121 25 chr11 16622094 16622621 -105221235 - Lx8 LINE L1 -202 7271 6694 1 711 29590 116 32 3 chr11 16622636 16626032 -105217824 - L1_Mus3 LINE L1 0 6638 3142 1 711 834 45 0 0 chr11 16626032 16626143 -105217713 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 711 29590 129 16 3 chr11 16626143 16628207 -105215649 - L1_Mus3 LINE L1 -2742 3141 1065 1 711 801 0 0 0 chr11 16628207 16628296 -105215560 + (GAA)n Simple_repeat Simple_repeat 3 91 0 1 711 4923 172 65 4 chr11 16628296 16628944 -105214912 - L1_Mus3 LINE L1 -5570 1064 362 1 711 25406 22 0 4 chr11 16628952 16632606 -105211250 - L1Md_T LINE L1 0 6582 2972 1 711 1014 19 0 0 chr11 16632607 16632714 -105211142 - U6 snRNA snRNA 0 107 1 1 711 702 278 16 67 chr11 16632867 16633060 -105210796 + B3A SINE B2 14 196 -2 1 711 866 253 39 20 chr11 16633071 16633325 -105210531 - Charlie12 DNA MER1_type -356 2517 2259 1 711 1081 221 72 94 chr11 16633334 16633793 -105210063 - Charlie12 DNA MER1_type -1788 1085 637 1 711 380 282 77 24 chr11 16633847 16634054 -105209802 - RLTR12B LTR ERVK -29 499 282 1 711 745 242 49 47 chr11 16634113 16634390 -105209466 - RLTR12B LTR ERVK -255 273 42 1 711 400 313 63 45 chr11 16634492 16634713 -105209143 - Charlie12 DNA MER1_type -2247 626 402 1 711 1168 270 73 54 chr11 16634756 16634936 -105208920 - RMER15-int LTR ERVL -3370 1629 1443 1 711 1029 133 198 21 chr11 16634936 16635128 -105208728 + URR1A DNA MER1_type 1 226 0 1 711 1168 270 73 54 chr11 16635128 16635413 -105208443 - RMER15-int LTR ERVL -3557 1442 1155 1 711 414 304 81 7 chr11 16635415 16635564 -105208292 + RMER15 LTR ERVL 329 488 -87 1 711 253 188 0 20 chr11 16635579 16635628 -105208228 - RMER15 LTR ERVL -255 320 273 1 711 352 311 49 33 chr11 16636305 16636488 -105207368 - B3A SINE B2 0 198 13 1 711 237 213 82 0 chr11 16636579 16636640 -105207216 - ID4 SINE ID -16 67 2 1 711 994 290 80 57 chr11 16637531 16637984 -105205872 + L1ME1 LINE L1 5611 6073 -106 1 711 21 57 0 0 chr11 16638401 16638436 -105205420 + AT_rich Low_complexity Low_complexity 1 35 0 1 711 324 345 121 41 chr11 16639467 16639806 -105204050 + L2 LINE L2 2188 2553 -866 1 711 951 263 48 20 chr11 16640269 16640517 -105203339 + Lx6 LINE L1 7180 7434 -26 1 711 663 199 36 22 chr11 16640531 16640670 -105203186 + MTC LTR MaLR 228 368 -53 1 711 574 279 44 111 chr11 16642444 16642742 -105201114 - B4A SINE B4 -13 279 2 1 711 462 263 58 17 chr11 16642985 16643105 -105200751 + RSINE1 SINE B4 27 151 -14 1 711 697 295 47 16 chr11 16643921 16644238 -105199618 - L1MCa LINE L1 -1949 4372 4046 1 711 1286 238 78 98 chr11 16644425 16644812 -105199044 - MTE2b LTR MaLR 0 379 1 1 711 1488 296 82 55 chr11 16644876 16645839 -105198017 - L1M2 LINE L1 -877 5420 4425 1 88 862 281 57 78 chr11 16645992 16646516 -105197340 - L1MCa LINE L1 -5127 1381 869 1 712 750 305 48 48 chr11 16646653 16646709 -105197147 - L1MCa LINE L1 -5645 863 808 1 712 1778 204 61 11 chr11 16646709 16647071 -105196785 + ORR1C2 LTR MaLR 1 380 -4 1 712 750 305 48 48 chr11 16647071 16647345 -105196511 - L1MCa LINE L1 -5701 807 533 1 712 450 306 61 0 chr11 16647372 16647568 -105196288 - L1MCa LINE L1 -6076 432 225 1 712 21 0 0 0 chr11 16647701 16647722 -105196134 + GC_rich Low_complexity Low_complexity 1 21 0 2 712 34 0 0 0 chr11 16648482 16648516 -105195340 + AT_rich Low_complexity Low_complexity 1 34 0 2 712 216 86 0 0 chr11 16649011 16649046 -105194810 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 712 1206 69 0 0 chr11 16649046 16649190 -105194666 - B1_Mus2 SINE Alu -3 144 1 2 712 1729 26 0 10 chr11 16649759 16649952 -105193904 + B2_Mm1a SINE B2 3 193 0 2 712 2685 240 113 22 chr11 16650126 16650961 -105192895 + RCHARR1 DNA MER1_type 64 974 0 2 712 183 239 43 0 chr11 16651573 16651619 -105192237 - L2c LINE L2 -5 3382 3335 2 712 206 250 0 20 chr11 16651878 16651927 -105191929 + GA-rich Low_complexity Low_complexity 1 48 0 2 712 190 204 143 0 chr11 16653965 16654014 -105189842 + MER5B DNA MER1_type 1 56 -122 2 712 212 311 89 0 chr11 16654877 16654967 -105188889 - MIRm SINE MIR -138 138 41 2 712 342 0 0 0 chr11 16655366 16655404 -105188452 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 2 712 702 266 6 36 chr11 16659246 16659414 -105184442 - RSINE1 SINE B4 0 165 3 2 712 360 0 0 0 chr11 16659697 16659737 -105184119 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 712 22 0 0 0 chr11 16659812 16659834 -105184022 + AT_rich Low_complexity Low_complexity 1 22 0 2 712 608 179 76 76 chr11 16659834 16659991 -105183865 - Lx4A LINE L1 -2 7056 6900 2 712 2271 95 10 3 chr11 16662156 16662461 -105181395 + L1_Mus3 LINE L1 6325 6631 -7 2 712 358 284 114 73 chr11 16663303 16663523 -105180333 - ORR1E LTR MaLR -105 254 26 2 712 732 238 6 52 chr11 16663700 16663873 -105179983 + B3 SINE B2 9 173 -43 2 712 981 231 20 5 chr11 16664392 16664596 -105179260 - B3 SINE B2 0 216 10 2 712 350 255 52 31 chr11 16664746 16664843 -105179013 - PB1D10 SINE Alu 0 117 19 2 712 251 277 27 81 chr11 16665384 16665533 -105178323 + L1ME3A LINE L1 6029 6169 -4 2 712 361 320 42 71 chr11 16665583 16665751 -105178105 + RSINE1 SINE B4 1 163 -2 2 712 194 0 39 0 chr11 16666996 16667022 -105176834 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 2 712 399 92 0 0 chr11 16667633 16667698 -105176158 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 712 284 294 73 9 chr11 16669095 16669205 -105174651 + MER20 DNA MER1_type 31 147 -72 2 712 193 273 76 0 chr11 16670276 16670342 -105173514 + L2a LINE L2 3353 3423 -3 2 712 326 264 11 0 chr11 16670877 16670968 -105172888 - 4.5SRNA scRNA scRNA -2 92 1 2 712 958 284 25 7 chr11 16671112 16671389 -105172467 + B4 SINE B4 1 282 -10 2 712 548 280 28 0 chr11 16672195 16672338 -105171518 - B1F2 SINE Alu -1 148 2 2 712 246 289 48 54 chr11 16672341 16672509 -105171347 + MER33 DNA MER1_type 150 316 -8 2 712 217 328 0 0 chr11 16673010 16673068 -105170788 + ID4_ SINE ID 16 73 -10 2 712 390 154 15 0 chr11 16673399 16673464 -105170392 - Lx9 LINE L1 -334 7310 7245 2 712 1178 125 14 24 chr11 16673461 16673606 -105170250 + Lx9 LINE L1 7303 7449 -195 2 712 4207 89 5 19 chr11 16673606 16674200 -105169656 + Lx LINE L1 6062 6647 -7 2 712 1178 125 14 24 chr11 16674200 16674267 -105169589 + Lx9 LINE L1 7450 7513 -131 2 712 217 262 57 0 chr11 16674267 16674408 -105169448 + (TA)n Simple_repeat Simple_repeat 1 149 0 2 712 372 149 14 0 chr11 16674437 16674511 -105169345 + Lx9 LINE L1 7569 7643 -1 2 712 219 378 0 0 chr11 16674535 16674609 -105169247 + ID4 SINE ID 4 77 -6 2 712 207 0 0 0 chr11 16674690 16674713 -105169143 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 712 1182 62 0 7 chr11 16674716 16674863 -105168993 - B1_Mm SINE Alu 0 147 2 2 712 552 217 0 33 chr11 16675017 16675198 -105168658 + (CATA)n Simple_repeat Simple_repeat 4 178 0 2 712 462 249 6 17 chr11 16675224 16675404 -105168452 + (CATA)n Simple_repeat Simple_repeat 1 178 0 2 712 295 189 22 22 chr11 16675421 16675513 -105168343 + (CATA)n Simple_repeat Simple_repeat 1 92 0 2 712 27 0 0 0 chr11 16675517 16675544 -105168312 + AT_rich Low_complexity Low_complexity 1 27 0 2 712 2197 183 4 96 chr11 16677401 16677878 -105165978 + Lx5 LINE L1 6618 7050 0 2 712 238 255 0 0 chr11 16678085 16678136 -105165720 - L1MB3 LINE L1 -65 6118 6068 2 712 352 198 58 0 chr11 16678268 16678354 -105165502 - L1MB3 LINE L1 -279 5904 5814 2 712 333 0 0 0 chr11 16678710 16678747 -105165109 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2 712 536 101 11 0 chr11 16680107 16680196 -105163660 + (TTTTTG)n Simple_repeat Simple_repeat 6 95 0 2 712 562 212 17 26 chr11 16680196 16680312 -105163544 - PB1D9 SINE Alu 0 120 6 2 712 843 260 50 127 chr11 16683192 16683593 -105160263 - MTE2a LTR MaLR 0 379 10 2 712 450 323 129 44 chr11 16684062 16684589 -105159267 + L3 LINE CR1 3814 4385 -104 2 712 311 246 57 71 chr11 16684935 16685004 -105158852 - L1MA6 LINE L1 -4 6296 6230 2 712 1277 176 14 0 chr11 16685004 16685225 -105158631 + URR1B DNA MER1_type 2 225 0 2 712 311 246 57 71 chr11 16685225 16685295 -105158561 - L1MA6 LINE L1 -71 6229 6159 2 712 322 221 146 10 chr11 16686109 16686205 -105157651 - B1_Mur4 SINE Alu -1 149 41 2 712 444 324 14 27 chr11 16687261 16687407 -105156449 + RSINE1 SINE B4 3 146 -19 2 712 2196 127 66 24 chr11 16690647 16691027 -105152829 + Lx LINE L1 6257 6652 -2 2 712 1134 174 0 5 chr11 16695794 16695991 -105147865 - URR1B DNA MER1_type 0 225 30 2 712 357 225 107 84 chr11 16697575 16697706 -105146150 + RSINE1 SINE B4 2 135 -30 2 712 237 257 0 0 chr11 16698995 16699065 -105144791 + Lx3B LINE L1 6900 6969 -4 2 712 238 279 12 25 chr11 16702302 16702383 -105141473 - MLT1A0 LTR MaLR -17 348 269 2 712 1047 258 87 29 chr11 16703268 16703729 -105140127 + L1MA8 LINE L1 5818 6312 0 2 712 225 0 0 0 chr11 16704599 16704624 -105139232 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 712 425 282 192 41 chr11 16704851 16705310 -105138546 - Lx9 LINE L1 -22 7622 7095 2 712 686 333 100 43 chr11 16705294 16705714 -105138142 - Lx8 LINE L1 -542 6931 6488 2 712 661 313 54 71 chr11 16706514 16706906 -105136950 - MLT1C LTR MaLR -8 459 75 2 712 297 327 47 0 chr11 16707331 16707438 -105136418 - MLT1E1 LTR MaLR -160 494 383 2 712 202 280 0 39 chr11 16709216 16709294 -105134562 + GA-rich Low_complexity Low_complexity 3 77 0 2 712 234 33 0 0 chr11 16709866 16709896 -105133960 - L1_Mus4 LINE L1 -703 5933 5904 2 712 927 48 20 20 chr11 16711013 16711162 -105132694 + (TC)n Simple_repeat Simple_repeat 2 150 0 2 712 558 299 44 17 chr11 16712814 16712994 -105130862 - B3A SINE B2 0 198 14 2 712 210 158 0 0 chr11 16713012 16713050 -105130806 + A-rich Low_complexity Low_complexity 1 38 0 2 712 315 0 0 0 chr11 16713863 16713898 -105129958 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 712 931 156 200 0 chr11 16714038 16714218 -105129638 + B3 SINE B2 1 216 0 2 712 1107 142 16 21 chr11 16715841 16716035 -105127821 - B2_Mm2 SINE B2 -2 193 1 2 712 274 247 27 0 chr11 16717778 16717851 -105126005 + GA-rich Low_complexity Low_complexity 4 78 0 2 712 218 286 0 0 chr11 16718397 16718453 -105125403 + MIRb SINE MIR 121 176 -92 2 712 393 22 0 0 chr11 16718504 16718550 -105125306 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 712 514 229 140 6 chr11 16719455 16719626 -105124230 - L1MA6 LINE L1 -1 6299 6106 2 712 415 294 63 38 chr11 16721147 16721306 -105122550 - RSINE1 SINE B4 0 165 3 2 712 450 286 9 0 chr11 16721310 16721422 -105122434 - PB1 SINE Alu -14 113 1 2 712 180 143 0 0 chr11 16722459 16722501 -105121355 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 2 712 22 0 0 0 chr11 16724161 16724183 -105119673 + AT_rich Low_complexity Low_complexity 1 22 0 2 712 498 225 27 68 chr11 16724928 16725076 -105118780 + B1F SINE Alu 1 142 -7 2 712 39 0 0 0 chr11 16725386 16725425 -105118431 + AT_rich Low_complexity Low_complexity 1 39 0 2 712 252 0 0 0 chr11 16725457 16725485 -105118371 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2 712 460 286 38 113 chr11 16725969 16726182 -105117674 + RMER30 DNA MER1_type 2 198 -4 2 712 249 273 0 29 chr11 16727222 16727290 -105116566 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2 712 384 303 86 93 chr11 16727307 16727587 -105116269 - B4 SINE B4 -14 278 1 2 712 651 196 0 0 chr11 16731414 16731552 -105112304 + GA-rich Low_complexity Low_complexity 2 139 0 2 712 712 254 0 0 chr11 16734074 16734212 -105109644 + B1_Mur2 SINE Alu 4 141 -8 2 712 221 162 0 0 chr11 16735158 16735195 -105108661 - MER5B DNA MER1_type -125 53 17 2 712 76 78 0 0 chr11 16735413 16735580 -105108276 + AT_rich Low_complexity Low_complexity 1 167 0 2 712 270 284 77 61 chr11 16737154 16737480 -105106376 - L1ME3B LINE L1 -225 5948 5612 2 712 1927 245 66 32 chr11 16739866 16740079 -105103777 + Lx8 LINE L1 6923 7149 -324 2 712 2243 199 16 29 chr11 16740079 16740525 -105103331 - Lx5 LINE L1 0 7050 6611 2 712 1927 245 66 32 chr11 16740525 16740843 -105103013 + Lx8 LINE L1 7150 7472 -1 2 712 1276 140 17 59 chr11 16741895 16742131 -105101725 - URR1A DNA MER1_type 0 226 1 2 712 288 0 0 0 chr11 16742429 16742461 -105101395 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 712 746 120 335 18 chr11 16743115 16743285 -105100571 + URR1A DNA MER1_type 3 226 0 2 712 405 0 0 0 chr11 16744824 16744869 -105098987 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 712 336 287 0 10 chr11 16745129 16745231 -105098625 - PB1D10 SINE Alu -12 105 5 2 712 944 143 7 0 chr11 16745854 16746001 -105097855 + B1_Mus1 SINE Alu 1 148 0 2 712 258 320 13 0 chr11 16746112 16746187 -105097669 + MER58A DNA MER1_type 5 80 -144 2 712 4358 67 19 7 chr11 16746401 16747014 -105096842 - L1Md_F2 LINE L1 0 6582 6005 2 712 299 109 0 52 chr11 16747014 16747029 -105096827 + T-rich Low_complexity Low_complexity 1 15 0 2 712 3433 40 0 0 chr11 16747031 16747434 -105096422 - L1Md_T LINE L1 0 6582 6180 2 712 6103 50 2 0 chr11 16747420 16748295 -105095561 - L1Md_F2 LINE L1 -575 6007 5130 2 712 198 0 0 0 chr11 16748456 16748478 -105095378 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 3 712 193 349 108 8 chr11 16749183 16749313 -105094543 - MIRb SINE MIR -16 252 110 3 712 481 228 8 10 chr11 16750637 16750756 -105093100 - B3A SINE B2 -71 124 7 3 712 28 0 0 0 chr11 16752802 16752830 -105091026 + AT_rich Low_complexity Low_complexity 1 28 0 3 712 210 322 32 32 chr11 16752929 16753022 -105090834 - B2_Mm1t SINE B2 -100 93 1 3 712 21 0 0 0 chr11 16754755 16754776 -105089080 + AT_rich Low_complexity Low_complexity 1 21 0 3 712 333 297 45 9 chr11 16755630 16755742 -105088114 + B1_Mur1 SINE Alu 34 149 0 3 712 432 0 0 0 chr11 16755864 16755912 -105087944 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 712 25 0 0 0 chr11 16756692 16756717 -105087139 + AT_rich Low_complexity Low_complexity 1 25 0 3 712 1073 271 93 6 chr11 16758268 16758613 -105085243 + MTEb LTR MaLR 5 379 0 3 712 1239 48 0 0 chr11 16759142 16759288 -105084568 + B1_Mus2 SINE Alu 2 147 0 3 712 32 0 0 0 chr11 16759288 16759320 -105084536 + AT_rich Low_complexity Low_complexity 1 32 0 3 712 330 284 92 11 chr11 16760471 16760656 -105083200 - Tigger7 DNA MER2_type -28 2463 2264 3 712 641 267 30 12 chr11 16761861 16762028 -105081828 - B3A SINE B2 -26 172 3 3 712 441 0 0 0 chr11 16762087 16762136 -105081720 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 712 1065 260 118 8 chr11 16763865 16764264 -105079592 - L1MB3 LINE L1 -52 6131 5689 3 712 2204 264 112 7 chr11 16764873 16765650 -105078206 - Lx8 LINE L1 -2 7471 6613 3 712 24 53 0 0 chr11 16766251 16766289 -105077567 + AT_rich Low_complexity Low_complexity 1 38 0 3 712 471 63 51 0 chr11 16770099 16770178 -105073678 + (GGGAGA)n Simple_repeat Simple_repeat 3 85 0 3 712 27 29 0 0 chr11 16771163 16771197 -105072659 + AT_rich Low_complexity Low_complexity 1 34 0 3 712 669 131 0 23 chr11 16772551 16772684 -105071172 + (TA)n Simple_repeat Simple_repeat 2 131 0 3 712 702 309 62 20 chr11 16772989 16773342 -105070514 - L1MC4a LINE L1 -40 7842 7475 3 712 978 272 116 19 chr11 16775367 16775685 -105068171 + ORR1E LTR MaLR 4 352 -7 3 712 3827 268 146 12 chr11 16775690 16776966 -105066890 + ORR1E-int LTR MaLR 1 1446 -134 3 712 490 233 26 8 chr11 16776977 16777094 -105066762 + RSINE1 SINE B4 3 121 -44 3 712 423 0 0 0 chr11 16777095 16777142 -105066714 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 713 279 229 71 0 chr11 16777297 16777367 -105066489 + ORR1E LTR MaLR 1 75 -284 3 713 307 310 124 0 chr11 16782865 16782978 -105060878 + RSINE1 SINE B4 3 129 -36 3 713 255 61 0 0 chr11 16783009 16783042 -105060814 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 3 713 952 182 72 3 chr11 16783156 16783344 -105060512 + B3 SINE B2 2 198 0 3 713 455 245 176 78 chr11 16783928 16784132 -105059724 + ID_B1 SINE B4 1 224 0 3 713 363 23 0 0 chr11 16784204 16784248 -105059608 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 713 32 0 0 0 chr11 16784397 16784429 -105059427 + AT_rich Low_complexity Low_complexity 1 32 0 3 713 192 300 105 61 chr11 16784485 16784666 -105059190 + MIRb SINE MIR 68 256 -12 3 713 412 335 17 12 chr11 16784691 16784863 -105058993 - HAL1-2a_MD LINE L1 -502 2522 2350 3 713 1693 42 0 0 chr11 16788736 16788928 -105054928 + B2_Mm1t SINE B2 2 193 0 3 713 814 320 41 73 chr11 16789085 16789580 -105054276 + Lx9 LINE L1 6959 7473 0 3 713 1638 255 25 0 chr11 16791721 16792082 -105051774 - ORR1D2 LTR MaLR 0 370 1 3 713 414 298 19 0 chr11 16792110 16792214 -105051642 - PB1D10 SINE Alu -2 115 10 3 713 495 0 0 0 chr11 16792376 16792431 -105051425 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3 713 198 0 0 0 chr11 16792434 16792456 -105051400 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 713 366 271 33 33 chr11 16792482 16792604 -105051252 - Lx9 LINE L1 -268 7376 7255 3 713 444 243 298 12 chr11 16792629 16792800 -105051056 - Lx9 LINE L1 -451 7193 6974 3 713 201 39 0 0 chr11 16795084 16795110 -105048746 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 713 347 381 0 73 chr11 16795174 16795324 -105048532 - RSINE1 SINE B4 -24 141 3 3 713 309 278 10 0 chr11 16796134 16796231 -105047625 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 713 371 317 120 46 chr11 16798519 16798803 -105045053 - MLT1C LTR MaLR 0 467 163 3 713 281 258 44 22 chr11 16798838 16798929 -105044927 + L1MA7 LINE L1 6173 6265 -26 3 713 424 220 26 68 chr11 16801880 16801997 -105041859 - PB1D10 SINE Alu 0 117 6 3 713 222 292 18 36 chr11 16802231 16802341 -105041515 + GA-rich Low_complexity Low_complexity 1 108 0 3 713 1889 219 61 0 chr11 16807485 16807877 -105035979 - MTD LTR MaLR -1 418 3 3 713 390 258 21 0 chr11 16807918 16808015 -105035841 - MIR3 SINE MIR -34 174 76 3 713 339 246 18 0 chr11 16808213 16808327 -105035529 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 3 713 291 122 0 0 chr11 16808331 16808380 -105035476 + (ATTG)n Simple_repeat Simple_repeat 3 51 0 3 713 464 196 52 0 chr11 16810425 16810522 -105033334 + MER5A1 DNA MER1_type 9 110 -56 3 713 410 207 168 21 chr11 16810597 16810740 -105033116 - MER3 DNA MER1_type 0 209 46 3 713 194 191 0 21 chr11 16811164 16811212 -105032644 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 713 1260 146 116 0 chr11 16813243 16813442 -105030414 - URR1A DNA MER1_type -4 222 1 3 713 792 159 39 50 chr11 16814049 16814228 -105029628 - URR1B DNA MER1_type 0 225 49 3 713 558 43 0 0 chr11 16814465 16814534 -105029322 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 713 580 103 18 18 chr11 16816490 16816599 -105027257 - L1_Mus4 LINE L1 0 6636 6528 3 713 882 51 0 56 chr11 16816936 16817061 -105026795 + L1_Mus1 LINE L1 6450 6567 0 3 713 266 281 0 6 chr11 16817271 16817436 -105026420 + (CA)n Simple_repeat Simple_repeat 2 165 0 3 713 380 270 23 0 chr11 16818126 16818253 -105025603 - L1MC2 LINE L1 0 6344 6206 3 713 261 0 0 0 chr11 16818432 16818461 -105025395 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 3 713 435 38 0 0 chr11 16820721 16820774 -105023082 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 713 436 319 102 29 chr11 16820782 16821031 -105022825 - B4A SINE B4 -12 280 15 3 713 289 248 39 19 chr11 16821707 16821810 -105022046 + GA-rich Low_complexity Low_complexity 1 105 0 3 713 674 296 57 53 chr11 16821918 16822182 -105021674 - Lx9 LINE L1 -407 7237 6973 3 713 982 338 3 27 chr11 16822183 16822512 -105021344 + Lx9 LINE L1 6499 6819 -825 3 713 982 303 36 32 chr11 16822538 16822950 -105020906 - BGLII_B LTR ERVK -27 414 1 3 713 491 296 13 0 chr11 16822957 16823109 -105020747 + Lx9 LINE L1 6821 6974 -670 3 713 935 232 66 0 chr11 16823162 16823360 -105020496 + B3 SINE B2 1 211 -5 3 713 325 299 133 6 chr11 16823389 16823554 -105020302 + L1M5 LINE L1 4441 4626 -1520 3 713 3333 28 51 0 chr11 16824228 16824619 -105019237 + IAPLTR2a LTR ERVK 1 411 0 3 713 420 277 62 76 chr11 16824666 16824877 -105018979 - L1_Mur3 LINE L1 -3186 2691 2484 3 713 1905 233 44 32 chr11 16824894 16825395 -105018461 - Lx5 LINE L1 -3 7047 6541 3 713 1493 237 7 64 chr11 16825478 16825884 -105017972 + RMER19C LTR ERVK 229 611 0 3 713 4172 191 39 8 chr11 16825884 16826704 -105017152 - Lx5 LINE L1 -502 6548 5704 3 713 576 233 102 17 chr11 16826736 16826913 -105016943 - L1_Mur3 LINE L1 -3369 2478 2263 3 713 6589 117 74 1 chr11 16826921 16827868 -105015988 - Lx2 LINE L1 0 6997 5982 3 713 1382 41 0 0 chr11 16827869 16828039 -105015817 - L1VL4 LINE L1 -1258 2301 2132 3 713 3099 89 106 24 chr11 16828037 16828739 -105015117 - L1VL4 LINE L1 -2383 1176 401 3 713 838 118 0 0 chr11 16828751 16828870 -105014986 - ORR1A2 LTR MaLR -87 240 122 3 713 1035 318 64 28 chr11 16828882 16829804 -105014052 - L1_Mur3 LINE L1 -3600 2280 1326 3 713 3939 171 77 34 chr11 16829819 16830689 -105013167 - RLTR13D3 LTR ERVK 0 1114 1 3 713 378 0 0 0 chr11 16831013 16831055 -105012801 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 713 219 69 0 0 chr11 16831535 16831564 -105012292 + (A)n Simple_repeat Simple_repeat 1 29 0 3 713 240 372 57 28 chr11 16832144 16832321 -105011535 - MLT1A LTR MaLR -72 293 112 3 713 1671 178 57 18 chr11 16832326 16832658 -105011198 + ORR1B1 LTR MaLR 41 385 -9 3 713 349 250 113 26 chr11 16832682 16832797 -105011059 - MLT1A LTR MaLR -245 129 5 3 713 282 120 20 0 chr11 16833164 16833214 -105010642 + RMER4B LTR ERVK 1 51 -560 3 713 391 278 110 65 chr11 16833212 16833621 -105010235 + RMER4B LTR ERVK 193 577 -8 3 713 220 306 16 0 chr11 16833797 16833859 -105009997 - MIRm SINE MIR -3 273 211 3 713 212 400 37 18 chr11 16833989 16834121 -105009735 + L2a LINE L2 3219 3405 -21 3 713 945 98 0 56 chr11 16834468 16834630 -105009226 + B2_Mm2 SINE B2 41 193 -2 3 713 225 94 0 0 chr11 16834651 16834683 -105009173 + (GGA)n Simple_repeat Simple_repeat 2 33 0 3 713 24 0 0 0 chr11 16835225 16835249 -105008607 + AT_rich Low_complexity Low_complexity 1 24 0 3 713 574 302 71 11 chr11 16835396 16835580 -105008276 + B3A SINE B2 4 198 0 3 713 1127 244 98 4 chr11 16836380 16836655 -105007201 + ORR1D2 LTR MaLR 70 370 0 3 713 1400 236 9 36 chr11 16836656 16836990 -105006866 + ORR1D2-int LTR MaLR 2 326 -1044 3 713 237 333 93 56 chr11 16837836 16837998 -105005858 + MIR3 SINE MIR 24 191 -17 3 713 1045 108 6 6 chr11 16838069 16838237 -105005619 + (GAAA)n Simple_repeat Simple_repeat 4 171 0 3 713 1101 246 91 83 chr11 16838455 16838827 -105005029 + MTE2a LTR MaLR 5 379 0 3 713 469 292 8 8 chr11 16839646 16839777 -105004079 + ID_B1 SINE B4 86 216 -8 3 713 246 289 25 62 chr11 16839794 16839875 -105003981 + ID2 SINE ID 3 80 -3 3 713 265 284 20 0 chr11 16840246 16840322 -105003534 - ID4 SINE ID -61 91 14 3 713 480 154 35 17 chr11 16840670 16840728 -105003128 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 3 713 669 114 0 0 chr11 16840728 16840833 -105003023 + (TA)n Simple_repeat Simple_repeat 2 106 0 3 713 480 154 35 17 chr11 16840833 16840946 -105002910 + (TCTCTG)n Simple_repeat Simple_repeat 4 116 0 3 713 1156 188 48 6 chr11 16841124 16841432 -105002424 + MTC LTR MaLR 1 421 0 4 713 264 326 87 22 chr11 16841844 16841982 -105001874 + MIRb SINE MIR 11 157 -111 4 713 314 157 86 0 chr11 16842582 16842652 -105001204 + Lx LINE L1 6569 6644 -10 4 713 372 154 44 5 chr11 16842818 16842913 -105000943 - L1MA7 LINE L1 -360 5940 5844 4 713 1546 230 94 29 chr11 16842919 16843335 -105000521 + RMER15 LTR ERVL 1 443 -132 4 713 1056 255 98 37 chr11 16843415 16843681 -105000175 - L1MA7 LINE L1 -474 5817 5542 4 713 2173 128 131 39 chr11 16843681 16844039 -104999817 + ORR1B1 LTR MaLR 4 394 0 4 713 1056 255 98 37 chr11 16844039 16844179 -104999677 - L1MA7 LINE L1 -750 5541 5386 4 713 251 184 41 0 chr11 16845127 16845176 -104998680 - Tigger7 DNA MER2_type -1456 1035 985 4 713 710 301 90 112 chr11 16845189 16845545 -104998311 - Tigger7 DNA MER2_type -2143 348 1 4 713 405 0 0 0 chr11 16847271 16847316 -104996540 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 713 2305 273 33 21 chr11 16847317 16848014 -104995842 + Lx9 LINE L1 6770 7474 -170 4 713 279 0 0 0 chr11 16848014 16848045 -104995811 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 713 557 264 103 79 chr11 16848520 16848849 -104995007 - Lx8 LINE L1 -62 7411 7075 4 713 216 0 0 0 chr11 16848853 16848877 -104994979 + (TCCTG)n Simple_repeat Simple_repeat 3 26 0 4 713 975 202 117 44 chr11 16849086 16849210 -104994646 - MTD LTR MaLR -125 294 166 4 713 7038 52 4 2 chr11 16849210 16850017 -104993839 + RLTR13C2 LTR ERVK 1 808 0 4 713 975 202 117 44 chr11 16850017 16850166 -104993690 - MTD LTR MaLR -254 165 1 4 713 548 250 102 11 chr11 16851638 16851824 -104992032 + B3 SINE B2 1 203 -13 4 713 21 36 0 0 chr11 16854741 16854769 -104989087 + AT_rich Low_complexity Low_complexity 1 28 0 4 713 1709 26 0 0 chr11 16855066 16855258 -104988598 - L1Md_A LINE L1 0 6582 6391 4 713 1187 265 20 83 chr11 16855485 16855880 -104987976 - ORR1D2 LTR MaLR 0 370 1 4 713 253 312 61 46 chr11 16856158 16856289 -104987567 - L3 LINE CR1 -225 4264 4132 4 713 315 191 0 0 chr11 16858959 16859022 -104984834 + (TATG)n Simple_repeat Simple_repeat 4 66 0 4 713 1948 88 37 0 chr11 16859143 16859416 -104984440 + Lx3A LINE L1 6248 6530 -479 4 713 1203 98 60 0 chr11 16859416 16859599 -104984257 + L1_Mus3 LINE L1 6444 6637 -1 4 713 3116 123 39 2 chr11 16859592 16860049 -104983807 + Lx3A LINE L1 6502 6975 -6 4 713 7981 39 0 0 chr11 16860060 16861020 -104982836 - L1Md_F3 LINE L1 -1313 4570 3611 4 713 8300 52 1 7 chr11 16861017 16861487 -104982369 + L1Md_F3 LINE L1 4575 5044 -839 4 713 2896 116 36 34 chr11 16861487 16861961 -104981895 + IAPLTR2_Mm LTR ERVK 1 475 0 4 713 8300 52 1 7 chr11 16861961 16862508 -104981348 + L1Md_F3 LINE L1 5045 5586 -297 4 713 8789 30 8 2 chr11 16862508 16863499 -104980357 + L1Md_F3 LINE L1 5587 6583 -1 4 713 1071 101 0 0 chr11 16863956 16864115 -104979741 + (TG)n Simple_repeat Simple_repeat 1 159 0 4 713 303 253 228 6 chr11 16864184 16864355 -104979501 - L1MC4 LINE L1 -142 7900 7692 4 713 208 231 0 0 chr11 16864397 16864489 -104979367 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 4 713 528 45 0 0 chr11 16865382 16865449 -104978407 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 713 1384 286 148 13 chr11 16867049 16867666 -104976190 - Lx9 LINE L1 -787 6857 6158 4 713 24 0 0 0 chr11 16867828 16867852 -104976004 + AT_rich Low_complexity Low_complexity 1 24 0 4 713 269 51 26 0 chr11 16868222 16868261 -104975595 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 713 1824 189 35 5 chr11 16868972 16869340 -104974516 - Lx9 LINE L1 -22 7622 7244 4 713 206 279 0 0 chr11 16869462 16869505 -104974351 + C-rich Low_complexity Low_complexity 1 43 0 4 713 513 283 57 28 chr11 16869525 16869781 -104974075 - L1_Mur3 LINE L1 -1514 4366 4092 4 713 386 178 27 0 chr11 16869781 16869854 -104974002 + MTD LTR MaLR 1 75 -344 4 713 348 194 296 0 chr11 16869852 16869950 -104973906 + MTC LTR MaLR 293 419 -2 4 713 615 201 36 72 chr11 16869953 16870119 -104973737 + MTC-int LTR MaLR 2 161 -1097 4 713 2112 255 33 10 chr11 16870116 16870626 -104973230 - MT2A LTR ERVL -11 522 1 4 713 732 266 81 14 chr11 16870634 16870844 -104973012 + MLT1D LTR MaLR 282 505 0 4 713 21 0 0 0 chr11 16870857 16870878 -104972978 + AT_rich Low_complexity Low_complexity 1 21 0 4 713 252 296 191 14 chr11 16871037 16871184 -104972672 - MER21B LTR ERV1 -51 812 640 4 713 331 195 66 44 chr11 16871218 16871309 -104972547 + RLTR25B LTR ERVK 417 509 -519 4 713 818 55 0 9 chr11 16871241 16871352 -104972504 + B1_Mm SINE Alu 37 146 -1 4 713 274 245 61 128 chr11 16871352 16871405 -104972451 + B4A SINE B4 122 274 -18 4 713 880 243 87 47 chr11 16871429 16871727 -104972129 - RMER5 LTR ERV1 -2 532 223 4 713 732 251 61 42 chr11 16871727 16871939 -104971917 - Lx8 LINE L1 -678 6795 6580 4 713 325 280 143 74 chr11 16872066 16872324 -104971532 - ORR1E LTR MaLR -7 352 77 4 713 355 327 23 64 chr11 16873262 16873481 -104970375 - HERV16-int LTR ERVL -1297 3699 3490 4 713 226 336 112 25 chr11 16874044 16874214 -104969642 + MIR SINE MIR 19 209 -59 4 713 651 26 0 0 chr11 16875718 16875795 -104968061 + (GA)n Simple_repeat Simple_repeat 1 77 0 4 713 649 318 86 70 chr11 16876099 16876246 -104967610 - L1ME1 LINE L1 -150 6029 5894 4 713 1273 42 0 0 chr11 16876246 16876388 -104967468 - B1_Mus1 SINE Alu -5 143 2 4 713 649 318 86 70 chr11 16876388 16876859 -104966997 - L1ME1 LINE L1 -286 5893 5401 4 713 302 274 24 11 chr11 16877877 16877971 -104965885 + MTEa LTR MaLR 282 377 -2 4 713 240 35 0 0 chr11 16878527 16878556 -104965300 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 713 251 317 0 0 chr11 16878774 16878834 -104965022 - B1F1 SINE Alu -89 60 1 4 713 999 238 24 5 chr11 16879451 16879662 -104964194 - B3 SINE B2 -1 215 1 4 713 234 0 0 0 chr11 16880028 16880054 -104963802 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 713 1128 45 45 0 chr11 16880054 16880186 -104963670 - B1_Mus2 SINE Alu -9 138 1 4 713 785 267 62 5 chr11 16880274 16880340 -104963516 + B3 SINE B2 4 70 -146 4 713 867 57 0 0 chr11 16880340 16880462 -104963394 + (CA)n Simple_repeat Simple_repeat 2 123 0 4 713 785 267 62 5 chr11 16880462 16880587 -104963269 + B3 SINE B2 71 205 -11 4 713 22 0 0 0 chr11 16880587 16880609 -104963247 + AT_rich Low_complexity Low_complexity 1 22 0 4 713 198 320 86 19 chr11 16881500 16881605 -104962251 - MIR3 SINE MIR -27 181 70 4 713 220 242 16 0 chr11 16882236 16882298 -104961558 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 713 783 275 81 21 chr11 16883431 16883916 -104959940 + L1MA4A LINE L1 5023 5604 -696 4 713 359 279 77 13 chr11 16883954 16883988 -104959868 + L1MA4A LINE L1 5757 5792 -511 4 713 5217 142 68 38 chr11 16883988 16884869 -104958987 + RMER13B LTR ERVK 1 908 0 4 713 359 260 164 31 chr11 16884869 16885060 -104958796 + L1MA4A LINE L1 5793 6011 -289 4 713 360 0 0 0 chr11 16885182 16885222 -104958634 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 713 312 96 0 37 chr11 16886230 16886284 -104957572 + L1Md_F2 LINE L1 6519 6570 -12 4 713 197 98 0 24 chr11 16888566 16888608 -104955248 + (TTAAA)n Simple_repeat Simple_repeat 1 41 0 4 713 1207 183 9 5 chr11 16888624 16888844 -104955012 + URR1B DNA MER1_type 5 225 0 4 713 442 229 106 55 chr11 16889351 16889550 -104954306 - RMER21B LTR ERV1 -332 510 302 4 713 760 160 0 65 chr11 16889612 16889766 -104954090 - RMER21B LTR ERV1 -665 177 34 4 713 437 294 0 68 chr11 16889783 16889900 -104953956 - RSINE1 SINE B4 -52 113 5 4 713 207 139 0 0 chr11 16890446 16890482 -104953374 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 713 279 329 66 12 chr11 16892389 16892555 -104951301 - MIR SINE MIR -84 178 4 4 713 532 284 151 32 chr11 16893400 16893651 -104950205 + B4A SINE B4 12 292 0 4 713 555 271 155 15 chr11 16895778 16895984 -104947872 - MTD LTR MaLR -14 405 171 4 713 327 224 0 13 chr11 16896004 16896081 -104947775 - MTD LTR MaLR -318 101 26 4 713 873 0 0 0 chr11 16896353 16896450 -104947406 + (TCTCCC)n Simple_repeat Simple_repeat 6 102 0 4 713 1952 283 128 13 chr11 16896729 16897487 -104946369 + Lx8 LINE L1 6628 7472 -1 4 713 289 333 83 6 chr11 16897972 16898153 -104945703 + L1M5 LINE L1 5292 5486 -693 4 713 206 191 43 0 chr11 16898706 16898753 -104945103 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 4 713 273 29 0 0 chr11 16898757 16898791 -104945065 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 713 284 293 31 20 chr11 16899253 16899428 -104944428 + L1MA4 LINE L1 5665 5918 -382 4 713 450 0 0 0 chr11 16899436 16899486 -104944370 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 713 201 39 0 0 chr11 16899728 16899754 -104944102 + (A)n Simple_repeat Simple_repeat 1 26 0 4 713 1217 41 0 0 chr11 16899760 16899906 -104943950 + B1_Mm SINE Alu 2 147 0 4 713 292 200 0 0 chr11 16900024 16900079 -104943777 + B2_Mm2 SINE B2 2 56 -139 4 713 3226 139 98 31 chr11 16900855 16901426 -104942430 + RMER19C LTR ERVK 3 611 0 4 713 1940 102 2 11 chr11 16901881 16902171 -104941685 - L1_Mus1 LINE L1 -246 6321 6081 4 713 1931 43 0 0 chr11 16902171 16902401 -104941455 + L1_Mus1 LINE L1 6337 6566 -1 4 713 264 317 60 40 chr11 16903815 16903966 -104939890 + MIR SINE MIR 87 240 -22 4 713 680 54 0 11 chr11 16904110 16904204 -104939652 + (CTCA)n Simple_repeat Simple_repeat 3 95 0 4 713 218 321 123 0 chr11 16904691 16904797 -104939059 + MIRb SINE MIR 6 124 -144 4 713 579 236 8 0 chr11 16905060 16905187 -104938669 + RSINE1 SINE B4 3 130 -35 4 713 291 150 0 0 chr11 16905208 16905268 -104938588 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 713 336 24 0 0 chr11 16905723 16905764 -104938092 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 4 713 221 351 12 38 chr11 16905927 16906007 -104937849 + ID4 SINE ID 6 83 0 4 713 1617 67 0 0 chr11 16906415 16906624 -104937232 - L1Md_T LINE L1 -1 6581 6373 4 713 252 300 240 8 chr11 16906677 16906798 -104937058 + RSINE1 SINE B4 4 152 -13 4 713 1107 89 0 0 chr11 16906812 16906991 -104936865 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 713 311 304 0 111 chr11 16907464 16907590 -104936266 + PB1D7 SINE Alu 1 112 -8 4 714 732 259 53 65 chr11 16909081 16909454 -104934402 + Lx9 LINE L1 5755 6114 -1530 4 714 515 230 0 39 chr11 16909566 16909670 -104934186 + Lx9 LINE L1 6382 6481 -1163 4 714 825 168 0 0 chr11 16909679 16909810 -104934046 + B1_Mur2 SINE Alu 9 139 -10 4 714 2818 293 58 38 chr11 16909828 16910975 -104932881 + Lx9 LINE L1 6476 7644 0 4 714 224 277 105 11 chr11 16911111 16911206 -104932650 - MIRc SINE MIR -102 166 63 4 714 420 248 139 61 chr11 16911391 16911727 -104932129 + MLT1C LTR MaLR 47 386 -4 5 714 1475 246 27 14 chr11 16911822 16912235 -104931621 + RMER5 LTR ERV1 109 526 -8 5 714 259 332 66 75 chr11 16912395 16912623 -104931233 - MIRb SINE MIR -24 244 19 5 714 2191 81 23 0 chr11 16913237 16913546 -104930310 - MusHAL1 LINE L1 -534 2178 1863 5 714 952 70 8 0 chr11 16913543 16913672 -104930184 - L1_Mur1 LINE L1 -3193 2693 2564 5 714 9064 129 9 7 chr11 16913670 16915040 -104928816 + Lx2B LINE L1 5626 6998 -2 5 714 24 32 0 0 chr11 16915040 16915071 -104928785 + AT_rich Low_complexity Low_complexity 1 31 0 5 714 835 132 23 6 chr11 16915830 16916005 -104927851 + CT-rich Low_complexity Low_complexity 1 178 0 5 714 515 327 24 19 chr11 16916275 16916484 -104927372 + L1MC3 LINE L1 6638 6847 -938 5 714 686 242 145 0 chr11 16916507 16916693 -104927163 + B3 SINE B2 1 213 -3 5 714 24 53 0 0 chr11 16916693 16916731 -104927125 + AT_rich Low_complexity Low_complexity 1 38 0 5 714 443 270 9 0 chr11 16916979 16917094 -104926762 + MER2 DNA MER2_type 167 282 -63 5 714 2179 109 12 61 chr11 16917119 16917462 -104926394 - ORR1A3 LTR MaLR 0 326 1 5 714 861 51 8 0 chr11 16917617 16917735 -104926121 - L1_Mus2 LINE L1 -1 6565 6447 5 714 2855 174 161 26 chr11 16918143 16918936 -104924920 + RLTR13D3 LTR ERVK 1 1114 0 5 714 401 217 42 42 chr11 16920441 16920537 -104923319 - PB1D10 SINE Alu -1 116 21 5 714 475 227 19 3 chr11 16920610 16920724 -104923132 + B1_Mur2 SINE Alu 20 132 -17 5 714 559 257 140 0 chr11 16920750 16920921 -104922935 - B3A SINE B2 -2 196 2 5 714 486 276 22 15 chr11 16921078 16921214 -104922642 + B1F SINE Alu 3 139 -10 5 714 634 215 61 20 chr11 16921350 16921497 -104922359 + B3 SINE B2 57 209 -7 5 714 372 323 95 20 chr11 16921581 16921887 -104921969 - L2 LINE L2 -690 2729 2401 5 714 255 61 0 0 chr11 16922671 16922704 -104921152 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 5 714 192 40 0 0 chr11 16923103 16923128 -104920728 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 714 21 0 0 0 chr11 16925530 16925551 -104918305 + AT_rich Low_complexity Low_complexity 1 21 0 5 714 330 200 161 0 chr11 16925563 16925693 -104918163 + L1MC3 LINE L1 7614 7764 -21 5 714 505 296 95 5 chr11 16926326 16926526 -104917330 - MTD LTR MaLR -203 218 1 5 714 1440 277 90 44 chr11 16926532 16927141 -104916715 - MTD-int LTR MaLR -10 1248 612 5 714 273 264 104 44 chr11 16927141 16927358 -104916498 + Lx8 LINE L1 5751 6009 -1635 5 714 3579 266 91 27 chr11 16927532 16928722 -104915134 + Lx8 LINE L1 6208 7473 0 5 714 244 329 42 77 chr11 16929593 16929761 -104914095 - MIRb SINE MIR -70 198 37 5 714 252 0 0 0 chr11 16929935 16929963 -104913893 + (CATA)n Simple_repeat Simple_repeat 2 29 0 5 714 204 40 0 0 chr11 16930506 16930531 -104913325 + (TAA)n Simple_repeat Simple_repeat 1 25 0 5 714 227 103 26 0 chr11 16930833 16930872 -104912984 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 714 940 77 7 7 chr11 16930888 16931032 -104912824 + (TAGA)n Simple_repeat Simple_repeat 2 145 0 5 714 213 121 0 0 chr11 16931076 16931109 -104912747 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 5 714 519 293 43 0 chr11 16931109 16931249 -104912607 - B1_Mus2 SINE Alu 0 147 2 5 714 628 294 154 32 chr11 16931394 16931861 -104911995 - Lx8 LINE L1 -9 7464 6941 5 714 855 300 9 0 chr11 16931890 16932120 -104911736 - Lx8 LINE L1 -676 6797 6566 5 714 294 328 47 31 chr11 16932173 16932302 -104911554 - RSINE1 SINE B4 0 165 35 5 714 4475 4 0 0 chr11 16932302 16932794 -104911062 + L1Md_A LINE L1 5095 5586 -297 5 714 9211 2 0 0 chr11 16932794 16933790 -104910066 + L1Md_A LINE L1 5587 6582 0 5 714 21 0 0 0 chr11 16933790 16933811 -104910045 + AT_rich Low_complexity Low_complexity 1 21 0 5 714 316 297 14 0 chr11 16933811 16933885 -104909971 - RSINE1 SINE B4 -88 77 3 5 714 455 0 0 18 chr11 16933918 16933974 -104909882 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 714 324 0 0 0 chr11 16933974 16934009 -104909847 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 714 3717 171 54 47 chr11 16934009 16934146 -104909710 - RMER1A Other Other -15 1015 860 5 714 2287 132 0 0 chr11 16934146 16934472 -104909384 - ORR1A3 LTR MaLR 0 326 1 5 714 3717 176 54 48 chr11 16934472 16935120 -104908736 - RMER1A Other Other -171 859 267 5 714 463 278 16 16 chr11 16935287 16935415 -104908441 - B1_Mur1 SINE Alu -20 129 2 5 714 420 235 52 0 chr11 16935479 16935594 -104908262 - Lx6 LINE L1 -5 7455 7335 5 714 797 188 70 6 chr11 16935594 16935811 -104908045 - MT2B LTR ERVL -7 594 343 5 714 5203 195 87 39 chr11 16935811 16936898 -104906958 - Lx6 LINE L1 -255 7205 6067 5 714 898 203 30 30 chr11 16936908 16937137 -104906719 + Lx7 LINE L1 5758 5985 -1711 5 714 787 169 73 0 chr11 16937145 16937281 -104906575 - B1_Mus1 SINE Alu 0 148 3 5 714 328 246 136 34 chr11 16937318 16937436 -104906420 + MTE2b LTR MaLR 4 133 -246 5 714 1136 270 63 100 chr11 16937333 16937872 -104905984 + MT2A LTR ERVL 15 533 0 5 714 235 217 14 0 chr11 16938097 16938166 -104905690 + L1MC5 LINE L1 7706 7775 -186 5 714 2358 160 48 46 chr11 16938365 16938383 -104905473 + RMER1A Other Other 541 558 -472 5 714 306 0 0 0 chr11 16938383 16938417 -104905439 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 714 2358 160 48 46 chr11 16938417 16938779 -104905077 + RMER1A Other Other 559 922 -108 5 714 342 0 0 0 chr11 16938779 16938817 -104905039 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 714 2358 160 48 46 chr11 16938817 16938914 -104904942 + RMER1A Other Other 923 1019 -11 5 714 763 287 93 56 chr11 16939389 16940014 -104903842 + L1_Mur3 LINE L1 2558 3191 -2689 5 714 2275 107 3 58 chr11 16940014 16940362 -104903494 - ORR1A4 LTR MaLR 0 329 1 5 714 763 287 93 56 chr11 16940362 16940660 -104903196 + L1_Mur3 LINE L1 3192 3515 -2365 5 714 1183 274 69 48 chr11 16940723 16941228 -104902628 + L1_Mur3 LINE L1 3841 4356 -1524 5 714 607 225 12 48 chr11 16941261 16941429 -104902427 + Lx4A LINE L1 6882 7043 -15 5 714 1538 8 0 4 chr11 16941429 16941668 -104902188 + (GAA)n Simple_repeat Simple_repeat 1 237 0 5 714 566 266 163 67 chr11 16942093 16942627 -104901229 - RMER13A LTR ERVK -12 615 14 5 714 657 304 158 35 chr11 16942730 16943040 -104900816 + Lx8 LINE L1 6091 6438 -1035 5 714 1198 39 0 0 chr11 16943045 16943198 -104900658 + B2_Mm2 SINE B2 1 153 -42 5 714 1257 39 6 22 chr11 16943198 16943380 -104900476 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 714 405 171 0 0 chr11 16943385 16943502 -104900354 + GA-rich Low_complexity Low_complexity 1 117 0 5 714 818 114 0 15 chr11 16943536 16943670 -104900186 + (GGAAA)n Simple_repeat Simple_repeat 4 135 0 5 714 1958 310 101 16 chr11 16943684 16943825 -104900031 + Lx8 LINE L1 6442 6586 -887 5 714 1937 214 16 193 chr11 16943825 16944567 -104899289 - RMER19C LTR ERVK 0 611 1 5 714 1958 310 101 16 chr11 16944567 16945373 -104898483 + Lx8 LINE L1 6587 7470 -3 5 714 905 149 21 0 chr11 16945638 16945779 -104898077 + B1_Mur4 SINE Alu 2 145 -5 5 714 242 295 110 39 chr11 16946277 16946404 -104897452 - MIRb SINE MIR -98 170 35 5 714 607 301 38 43 chr11 16946838 16946852 -104897004 + B3A SINE B2 1 11 -187 5 714 4173 121 71 36 chr11 16946852 16947582 -104896274 + RMER6A LTR ERVK 1 756 0 5 714 607 301 38 43 chr11 16947582 16947751 -104896105 + B3A SINE B2 12 183 -15 5 714 645 132 28 28 chr11 16947951 16948060 -104895796 + RMER15 LTR ERVL 467 575 0 5 714 487 285 0 0 chr11 16948061 16948184 -104895672 + Lx9 LINE L1 7258 7380 -264 5 714 1654 209 95 6 chr11 16948478 16948665 -104895191 - ORR1C1 LTR MaLR 0 378 165 5 714 774 50 0 0 chr11 16948665 16948764 -104895092 + (GA)n Simple_repeat Simple_repeat 2 100 0 5 714 1654 209 95 6 chr11 16948764 16948923 -104894933 - ORR1C1 LTR MaLR -214 164 2 5 714 199 352 14 27 chr11 16950575 16950648 -104893208 - L2a LINE L2 -37 3389 3318 5 714 225 0 0 0 chr11 16953107 16953132 -104890724 + (A)n Simple_repeat Simple_repeat 1 25 0 5 714 916 242 104 98 chr11 16953144 16953510 -104890346 - MTE2a LTR MaLR -1 378 11 5 714 243 0 0 0 chr11 16953730 16953757 -104890099 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 714 250 338 69 35 chr11 16953998 16954142 -104889714 - MER5A DNA MER1_type 0 189 41 5 714 212 179 0 0 chr11 16954988 16955027 -104888829 + A-rich Low_complexity Low_complexity 1 39 0 5 714 591 253 157 8 chr11 16955122 16955383 -104888473 - MER2 DNA MER2_type 0 345 46 5 714 22 70 0 0 chr11 16956729 16956772 -104887084 + AT_rich Low_complexity Low_complexity 1 43 0 5 714 13284 85 16 2 chr11 16957095 16959427 -104884429 - L1VL2 LINE L1 -632 2983 617 5 714 10086 71 26 1 chr11 16959538 16961008 -104882848 - MusHAL1 LINE L1 -5 2707 1202 5 714 335 317 29 0 chr11 16961097 16961201 -104882655 + PB1D10 SINE Alu 1 107 -10 5 714 301 337 118 10 chr11 16961312 16961507 -104882349 + B3 SINE B2 1 216 0 5 714 262 294 0 0 chr11 16961607 16961692 -104882164 - L1M5 LINE L1 -520 5659 5575 5 714 640 322 20 7 chr11 16961695 16961848 -104882008 + B3A SINE B2 9 163 -35 5 714 429 20 0 0 chr11 16961850 16961900 -104881956 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 714 742 270 16 45 chr11 16961920 16962130 -104881726 + B3A SINE B2 1 200 -16 5 714 1205 234 52 3 chr11 16962138 16962429 -104881427 - Lx5 LINE L1 -226 6824 6520 5 714 5535 155 64 66 chr11 16962421 16962937 -104880919 - L1_Mur3 LINE L1 -3312 2565 2062 5 714 225 0 0 0 chr11 16962937 16962962 -104880894 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 714 5535 155 64 66 chr11 16962962 16963013 -104880843 - L1_Mur3 LINE L1 -3816 2061 2052 5 714 207 0 0 0 chr11 16963013 16963036 -104880820 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 714 5535 184 58 75 chr11 16963036 16964248 -104879608 - L1_Mur3 LINE L1 -3826 2051 885 5 714 374 300 137 17 chr11 16964713 16965011 -104878845 - L1MEc LINE L1 -2268 4051 3713 5 714 703 254 9 129 chr11 16965127 16965344 -104878512 - B3A SINE B2 -3 195 1 5 714 400 352 48 0 chr11 16965585 16965730 -104878126 - L1MEc LINE L1 -4953 1447 1296 5 714 488 332 59 52 chr11 16966205 16966494 -104877362 - B4A SINE B4 0 292 2 5 714 207 0 0 0 chr11 16966494 16966517 -104877339 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 5 714 220 312 0 97 chr11 16966517 16966620 -104877236 - RSINE1 SINE B4 -8 157 65 5 714 443 18 0 18 chr11 16967225 16967282 -104876574 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 714 342 284 48 54 chr11 16967287 16967473 -104876383 - L1M5 LINE L1 -2004 4142 3958 5 714 4506 68 2 20 chr11 16967554 16968158 -104875698 - L1Md_F2 LINE L1 0 6582 5990 6 714 403 308 9 71 chr11 16968221 16968333 -104875523 + B3A SINE B2 56 160 -38 6 714 216 67 0 0 chr11 16968340 16968370 -104875486 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 714 351 98 0 0 chr11 16968370 16968431 -104875425 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 714 557 292 158 33 chr11 16969021 16969205 -104874651 - B4A SINE B4 -84 208 2 6 714 477 0 0 0 chr11 16969309 16969362 -104874494 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 714 450 301 0 89 chr11 16969364 16969510 -104874346 - RSINE1 SINE B4 -15 150 18 6 714 657 311 86 38 chr11 16969808 16970179 -104873677 + Lx8 LINE L1 7085 7473 0 6 714 255 31 0 0 chr11 16970390 16970422 -104873434 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 714 752 257 9 78 chr11 16970625 16970857 -104872999 + B3 SINE B2 1 216 0 6 714 251 0 59 0 chr11 16971100 16971134 -104872722 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 714 1100 79 0 0 chr11 16971134 16971273 -104872583 - B1_Mus1 SINE Alu -9 139 1 6 714 499 280 17 8 chr11 16971334 16971453 -104872403 + B1F2 SINE Alu 25 144 -5 6 714 303 253 12 37 chr11 16971651 16971733 -104872123 - ID2 SINE ID -2 81 2 6 714 3228 100 0 67 chr11 16971986 16972275 -104871581 + L1VL2 LINE L1 812 1083 -5551 6 714 1519 79 66 0 chr11 16972275 16972503 -104871353 - Lx3_Mus LINE L1 0 7009 6767 6 714 9335 136 10 77 chr11 16972503 16973004 -104870852 + L1VL2 LINE L1 1084 1558 -4328 6 714 1212 76 0 0 chr11 16973004 16973162 -104870694 + B2_Mm2 SINE B2 2 159 -36 6 714 180 0 0 0 chr11 16973162 16973182 -104870674 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 714 10982 88 22 7 chr11 16973182 16974902 -104868954 + L1VL2 LINE L1 1549 3292 -2594 6 714 1378 71 16 5 chr11 16974995 16975180 -104868676 + B2_Mm2 SINE B2 3 189 -6 6 714 370 303 11 0 chr11 16976120 16976209 -104867647 - PB1D7 SINE Alu -30 90 1 6 714 4229 214 95 48 chr11 16976627 16977765 -104866091 + RMER12 LTR ERVK 1 1191 -131 6 714 428 326 43 68 chr11 16977879 16978086 -104865770 + RMER12 LTR ERVK 1121 1322 0 6 714 2946 172 19 4 chr11 16979556 16980070 -104863786 + RLTR17 LTR ERVK 171 692 0 6 714 552 227 145 55 chr11 16980070 16980559 -104863297 + RMER3D-int LTR ERVK 1 851 -1991 6 714 3844 202 48 56 chr11 16980575 16981775 -104862081 + RMER3D-int LTR ERVK 445 2152 -690 6 714 1647 190 10 35 chr11 16981800 16982203 -104861653 + RMER3D-int LTR ERVK 2450 2842 0 6 714 2105 157 25 6 chr11 16982203 16982563 -104861293 + RLTR17 LTR ERVK 1 367 -325 6 714 536 200 9 0 chr11 16982907 16983017 -104860839 + PB1D10 SINE Alu 5 115 -2 6 714 90 10 0 0 chr11 16983372 16983469 -104860387 + AT_rich Low_complexity Low_complexity 1 97 0 6 714 369 0 0 0 chr11 16983841 16983882 -104859974 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 714 28 0 0 0 chr11 16985125 16985153 -104858703 + AT_rich Low_complexity Low_complexity 1 28 0 6 714 423 0 0 0 chr11 16985340 16985387 -104858469 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 714 571 277 44 17 chr11 16985468 16985648 -104858208 - Tigger7 DNA MER2_type -8 2483 2299 6 714 539 313 0 20 chr11 16985676 16985829 -104858027 - Tigger7 DNA MER2_type -2340 151 2 6 714 414 57 0 0 chr11 16987274 16987327 -104856529 + (TCC)n Simple_repeat Simple_repeat 2 54 0 6 714 23 0 0 0 chr11 16987584 16987607 -104856249 + AT_rich Low_complexity Low_complexity 1 23 0 6 714 496 243 31 14 chr11 16988057 16988189 -104855667 + PB1D10 SINE Alu 1 128 -21 6 714 7257 89 8 1 chr11 16988344 16990157 -104853699 - L1_Mus3 LINE L1 -6 6632 4806 6 714 3850 153 45 31 chr11 16990157 16991176 -104852680 + RLTR13D1 LTR ERVK 1 1023 0 6 714 22240 109 8 9 chr11 16991176 16992668 -104851188 - L1VL1 LINE L1 -1072 4811 3336 6 714 3029 67 0 0 chr11 16992668 16993058 -104850798 - L1Md_T LINE L1 0 6582 6193 6 714 22240 107 7 8 chr11 16993058 16995267 -104848589 - L1VL1 LINE L1 -2548 3335 1115 6 714 614 49 12 0 chr11 16995267 16995349 -104848507 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 6 714 4468 106 5 38 chr11 16995705 16996439 -104847417 - L1VL1 LINE L1 -5864 1120 433 6 714 868 221 25 19 chr11 16996511 16996660 -104847196 + B3A SINE B2 2 154 -44 6 714 186 118 0 0 chr11 16996660 16996694 -104847162 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 6 714 868 230 34 70 chr11 16996694 16996732 -104847124 + B3A SINE B2 144 178 -17 6 714 283 294 62 35 chr11 16996742 16996855 -104847001 - MIRb SINE MIR -133 135 20 6 714 639 261 0 0 chr11 16997312 16997431 -104846425 - B1_Mur2 SINE Alu -25 124 6 6 714 564 282 149 9 chr11 16997419 16997634 -104846222 - B4A SINE B4 -44 248 4 6 714 397 285 87 7 chr11 16997639 16997777 -104846079 - B1F SINE Alu 0 149 1 6 714 369 0 0 0 chr11 16997838 16997879 -104845977 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 714 351 0 0 0 chr11 16997879 16997917 -104845939 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 714 308 60 75 0 chr11 16998246 16998313 -104845543 + (CAAAA)n Simple_repeat Simple_repeat 3 74 0 6 714 286 292 0 14 chr11 16998600 16998673 -104845183 - RMER5 LTR ERV1 -17 517 446 6 714 706 244 68 96 chr11 16998679 16998960 -104844896 - RMER5 LTR ERV1 -261 273 1 6 714 6291 61 1 20 chr11 16998987 17000000 -104843856 + L1Md_Gf LINE L1 286 1379 -4507 6 714 32457 69 2 1 chr11 17000000 17004205 -104839651 + L1Md_F2 LINE L1 1377 5586 -297 1 714 8596 45 4 3 chr11 17004205 17005200 -104838656 + L1Md_F2 LINE L1 5587 6582 0 1 714 1489 241 107 57 chr11 17005777 17006240 -104837616 + Lx8 LINE L1 6847 7332 -141 2 714 378 0 0 0 chr11 17006240 17006282 -104837574 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 714 1489 241 107 57 chr11 17006282 17006377 -104837479 + Lx8 LINE L1 7333 7433 -40 2 714 2047 152 75 23 chr11 17006587 17006936 -104836920 + ORR1B2 LTR MaLR 1 367 0 4 714 5705 89 33 25 chr11 17007721 17008559 -104835297 - L1_Mur2 LINE L1 -218 5659 4815 5 714 3826 134 60 0 chr11 17008559 17009126 -104834730 + Lx4A LINE L1 6458 7058 0 6 714 188 387 18 54 chr11 17009134 17009246 -104834610 + MER5A DNA MER1_type 54 161 -28 7 714 261 314 60 48 chr11 17009464 17009631 -104834225 + RMER5 LTR ERV1 49 217 -317 8 714 699 265 50 18 chr11 17009672 17009891 -104833965 + RMER5 LTR ERV1 281 506 -28 8 714 309 51 0 0 chr11 17009912 17009951 -104833905 + (TTGG)n Simple_repeat Simple_repeat 3 41 0 9 714 799 199 135 0 chr11 17010171 17010327 -104833529 + B3 SINE B2 1 177 -39 1 714 670 285 73 14 chr11 17011123 17011404 -104832452 + L1_Mur3 LINE L1 4615 4899 -981 1 714 23 0 0 0 chr11 17011483 17011506 -104832350 + AT_rich Low_complexity Low_complexity 1 23 0 1 714 10007 122 8 7 chr11 17013381 17015761 -104828095 - Lx LINE L1 0 6654 4275 1 714 6894 65 0 2 chr11 17015768 17016632 -104827224 - L1Md_F2 LINE L1 -2 6580 5719 1 714 389 105 0 0 chr11 17016627 17016684 -104827172 - L1_Mur2 LINE L1 -1597 4280 4224 1 714 2261 124 47 3 chr11 17017106 17017464 -104826392 - Lx4B LINE L1 -876 6182 5808 1 714 4935 149 60 14 chr11 17017464 17018292 -104825564 + Lx4B LINE L1 6191 7056 -2 1 714 1192 69 0 0 chr11 17018299 17018443 -104825413 + B1_Mus1 SINE Alu 3 146 -2 1 714 189 0 0 0 chr11 17018443 17018464 -104825392 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 714 231 36 0 0 chr11 17018680 17018708 -104825148 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 1 714 702 256 63 11 chr11 17019132 17019306 -104824550 - B3 SINE B2 -33 183 1 2 714 243 122 0 0 chr11 17019380 17019429 -104824427 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 714 7191 53 13 1 chr11 17019536 17020430 -104823426 - L1_Mus1 LINE L1 0 6654 5671 2 714 2099 17 0 0 chr11 17020428 17020661 -104823195 + L1_Mus1 LINE L1 5354 5586 -297 2 714 9055 32 0 0 chr11 17020661 17021657 -104822199 + L1Md_T LINE L1 5587 6582 0 2 714 3543 91 0 79 chr11 17021657 17021924 -104821932 - L1_Mm LINE L1 -201 5682 5446 2 714 1148 108 0 7 chr11 17021924 17022073 -104821783 - B1_Mus1 SINE Alu 0 148 1 2 714 3543 91 0 79 chr11 17022073 17022365 -104821491 - L1_Mm LINE L1 -438 5445 5167 2 714 3160 42 3 0 chr11 17022382 17022742 -104821114 + L1_Mus1 LINE L1 6205 6565 -2 2 714 1086 114 72 0 chr11 17023006 17023172 -104820684 + B2_Mm1t SINE B2 2 179 -14 2 714 347 175 0 5 chr11 17023204 17023269 -104820587 + B2_Mm2 SINE B2 47 109 -107 2 714 27 0 0 0 chr11 17023285 17023312 -104820544 + AT_rich Low_complexity Low_complexity 1 27 0 2 714 3389 132 85 40 chr11 17023437 17023623 -104820233 + MT2B LTR ERVL 1 234 -367 2 714 2134 129 12 58 chr11 17023623 17023968 -104819888 + ORR1A4 LTR MaLR 1 329 0 3 714 3389 132 85 40 chr11 17023968 17024356 -104819500 + MT2B LTR ERVL 235 601 0 2 714 265 299 131 39 chr11 17024686 17024839 -104819017 - MIRb SINE MIR -3 265 99 3 714 226 227 0 0 chr11 17025145 17025189 -104818667 - B3 SINE B2 -125 91 48 3 714 587 209 118 26 chr11 17025389 17025541 -104818315 + B3 SINE B2 1 166 -50 3 714 276 91 0 0 chr11 17025541 17025585 -104818271 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 714 433 211 138 122 chr11 17025585 17025621 -104818235 + B2_Mm2 SINE B2 149 192 -3 2 714 234 0 0 0 chr11 17026215 17026241 -104817615 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 714 722 184 0 0 chr11 17026871 17026985 -104816871 - B1_Mur4 SINE Alu -34 116 3 3 714 418 308 38 23 chr11 17026985 17027004 -104816852 - B4 SINE B4 -88 204 70 3 714 230 297 0 51 chr11 17027037 17027115 -104816741 + ID4_ SINE ID 1 74 -9 3 714 207 0 0 0 chr11 17027121 17027144 -104816712 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 714 429 20 0 0 chr11 17027144 17027193 -104816663 + (CATA)n Simple_repeat Simple_repeat 3 52 0 4 714 2202 119 12 12 chr11 17027691 17028022 -104815834 - ORR1B1 LTR MaLR 0 394 64 4 714 1550 167 29 121 chr11 17028124 17028505 -104815351 - ORR1B1 LTR MaLR -8 386 41 4 714 287 302 0 0 chr11 17028512 17028575 -104815281 + ID4_ SINE ID 3 65 -18 4 714 593 200 60 30 chr11 17028594 17028728 -104815128 + B3A SINE B2 3 140 -58 4 714 314 149 0 0 chr11 17029114 17029161 -104814695 + HAL1-3A_ME LINE L1 1972 2018 -840 4 714 887 140 6 0 chr11 17029161 17029318 -104814538 + (TA)n Simple_repeat Simple_repeat 1 158 0 4 714 388 331 117 7 chr11 17029864 17030001 -104813855 - RSINE1 SINE B4 -13 152 1 4 714 347 352 90 0 chr11 17030119 17030264 -104813592 - RSINE1 SINE B4 0 165 8 4 714 3807 196 173 4 chr11 17030548 17031454 -104812402 - RMER1B Other Other -4 1062 4 4 714 449 296 34 20 chr11 17031663 17031811 -104812045 + RSINE1 SINE B4 16 165 0 5 714 286 267 170 9 chr11 17031877 17031983 -104811873 + B2_Mm2 SINE B2 2 124 -71 5 714 487 333 14 0 chr11 17031987 17032125 -104811731 + RSINE1 SINE B4 26 165 0 5 714 25 0 0 0 chr11 17032125 17032150 -104811706 + AT_rich Low_complexity Low_complexity 1 25 0 5 714 1436 227 105 16 chr11 17032421 17032801 -104811055 - MTD LTR MaLR 0 419 6 5 714 2016 242 9 2 chr11 17032807 17033234 -104810622 + Lx8 LINE L1 6195 6624 -849 5 714 2447 227 67 13 chr11 17033522 17034075 -104809781 + Lx8 LINE L1 6639 7221 -252 5 714 1184 258 80 71 chr11 17034115 17034466 -104809390 - ORR1E LTR MaLR -5 354 1 5 714 278 264 80 62 chr11 17035113 17035226 -104808630 - B1F2 SINE Alu 0 149 35 5 714 317 307 123 15 chr11 17036100 17036218 -104807638 + PB1D10 SINE Alu 3 125 -2 5 714 261 0 0 0 chr11 17036231 17036260 -104807596 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 714 310 232 18 0 chr11 17036276 17036340 -104807516 + ID4_ SINE ID 9 73 -79 6 714 366 284 119 17 chr11 17036410 17036528 -104807328 + RSINE1 SINE B4 16 145 -20 6 714 849 190 123 0 chr11 17036780 17036943 -104806913 - B3 SINE B2 -7 209 27 6 714 1381 236 32 64 chr11 17037027 17037104 -104806752 + MTD LTR MaLR 18 93 -326 6 714 932 163 7 20 chr11 17037104 17037254 -104806602 + B1_Mus1 SINE Alu 1 148 0 6 714 1381 236 32 64 chr11 17037254 17037279 -104806577 + MTD LTR MaLR 94 113 -306 6 714 230 0 33 0 chr11 17037279 17037309 -104806547 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 714 1381 236 32 64 chr11 17037309 17037581 -104806275 + MTD LTR MaLR 114 381 -38 6 714 387 255 85 0 chr11 17037618 17037712 -104806144 + RSINE1 SINE B4 64 165 0 6 714 306 221 0 0 chr11 17037712 17037807 -104806049 + (CA)n Simple_repeat Simple_repeat 1 95 0 6 714 573 289 13 26 chr11 17038154 17038307 -104805549 - RSINE1 SINE B4 -6 159 9 6 714 208 269 0 0 chr11 17038573 17038625 -104805231 + T-rich Low_complexity Low_complexity 1 52 0 6 715 917 240 9 9 chr11 17039515 17039725 -104804131 + B3 SINE B2 7 216 0 7 715 24 0 0 0 chr11 17039731 17039755 -104804101 + AT_rich Low_complexity Low_complexity 1 24 0 7 715 263 273 81 24 chr11 17040304 17040428 -104803428 - Lx8 LINE L1 -10 7463 7333 7 715 757 229 7 0 chr11 17040584 17040728 -104803128 + ID_B1 SINE B4 77 221 -3 7 715 618 307 25 21 chr11 17041103 17041346 -104802510 + L1M3 LINE L1 3782 4025 -2115 7 715 1433 189 3 35 chr11 17041346 17041631 -104802225 + RLTR40 LTR ERVK 1 276 -541 7 715 624 91 0 0 chr11 17041703 17041791 -104802065 + (TTCTC)n Simple_repeat Simple_repeat 2 89 0 7 715 3163 274 46 49 chr11 17041841 17042780 -104801076 - Lx8 LINE L1 -326 7147 6212 7 715 2252 110 20 1 chr11 17042787 17043145 -104800711 + ORR1A4 LTR MaLR 1 394 0 7 715 2020 174 69 25 chr11 17043185 17043632 -104800224 - RLTR40 LTR ERVK -262 555 89 7 715 860 288 0 10 chr11 17044312 17044519 -104799337 - ID_B1 SINE B4 -19 205 1 7 715 22 35 0 0 chr11 17044578 17044607 -104799249 + AT_rich Low_complexity Low_complexity 1 29 0 8 715 311 288 16 83 chr11 17044732 17044853 -104799003 - B1F2 SINE Alu -11 138 26 8 715 406 207 57 43 chr11 17045009 17045150 -104798706 + BC1_Mm scRNA scRNA 6 148 -4 8 715 889 268 20 15 chr11 17045263 17045464 -104798392 + B4 SINE B4 85 286 -6 8 715 483 246 103 0 chr11 17045564 17045690 -104798166 + ID_B1 SINE B4 86 224 0 8 715 572 234 20 87 chr11 17045814 17045964 -104797892 + ID_B1 SINE B4 85 224 0 8 715 246 312 0 12 chr11 17046247 17046328 -104797528 + CT-rich Low_complexity Low_complexity 3 82 0 8 715 411 272 39 10 chr11 17046921 17047025 -104796831 + B4 SINE B4 160 266 -26 8 715 378 0 0 0 chr11 17047028 17047070 -104796786 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 715 1174 52 0 0 chr11 17047301 17047436 -104796420 + B1_Mm SINE Alu 1 135 -12 8 715 767 66 9 0 chr11 17047437 17047543 -104796313 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 9 715 879 259 67 20 chr11 17047876 17048218 -104795638 + Lx7 LINE L1 5550 5909 -1787 9 715 567 171 0 0 chr11 17048218 17048323 -104795533 + (CA)n Simple_repeat Simple_repeat 1 105 0 9 715 1226 244 34 73 chr11 17048352 17048710 -104795146 + ORR1E LTR MaLR 7 350 -9 9 715 543 283 91 17 chr11 17048752 17048928 -104794928 - MTE2a LTR MaLR 0 379 191 9 715 217 174 0 21 chr11 17048961 17049008 -104794848 + A-rich Low_complexity Low_complexity 2 47 0 9 715 820 265 37 0 chr11 17049040 17049229 -104794627 - MTE2a LTR MaLR -165 214 19 9 715 25 0 0 0 chr11 17049269 17049294 -104794562 + AT_rich Low_complexity Low_complexity 1 25 0 9 715 311 195 185 49 chr11 17049295 17049376 -104794480 - PB1D9 SINE Alu -1 119 28 9 715 369 0 0 0 chr11 17049394 17049435 -104794421 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 715 434 298 0 0 chr11 17049449 17049543 -104794313 - RSINE1 SINE B4 -69 96 3 9 715 1879 289 65 11 chr11 17049543 17050097 -104793759 - MTE-int LTR MaLR -27 1553 970 1 715 832 302 90 27 chr11 17050110 17050443 -104793413 - MTE-int LTR MaLR -684 896 543 1 715 309 249 36 34 chr11 17050447 17050587 -104793269 + MTEb LTR MaLR 239 379 0 1 715 736 189 98 0 chr11 17050793 17050925 -104792931 - B1_Mur1 SINE Alu -2 147 3 1 715 272 286 46 73 chr11 17050937 17051088 -104792768 + Tigger16a DNA Tigger 717 863 -70 1 715 416 298 10 83 chr11 17051804 17052009 -104791847 - B3A SINE B2 -5 193 4 1 715 441 68 0 39 chr11 17052245 17052322 -104791534 + (GGGGA)n Simple_repeat Simple_repeat 1 74 0 1 715 760 84 66 0 chr11 17052340 17052506 -104791350 + GA-rich Low_complexity Low_complexity 2 178 0 1 715 651 115 5 65 chr11 17052502 17052605 -104791251 + polypurine Low_complexity Low_complexity 2 98 0 1 715 3520 8 0 0 chr11 17052605 17052972 -104790884 - IAPLTR1_Mm LTR ERVK 0 367 1 1 715 651 115 5 65 chr11 17052972 17053054 -104790802 + polypurine Low_complexity Low_complexity 99 176 0 1 715 1378 32 4 13 chr11 17053057 17053282 -104790574 + (GAGAA)n Simple_repeat Simple_repeat 1 222 0 1 715 1592 208 189 9 chr11 17053323 17053967 -104789889 - ORR1C1-int LTR MaLR -590 780 1 1 715 1575 175 123 12 chr11 17054004 17054328 -104789528 - ORR1C1 LTR MaLR -16 362 3 1 715 204 125 0 0 chr11 17055360 17055392 -104788464 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 715 3443 48 5 2 chr11 17055691 17056086 -104787770 - MTA_Mm LTR MaLR 0 396 1 1 715 6019 73 184 80 chr11 17056086 17057081 -104786775 - MTA_Mm-int LTR MaLR 0 1098 1 1 715 3202 53 8 8 chr11 17057081 17057477 -104786379 - MTA_Mm LTR MaLR 0 396 1 1 715 864 142 6 51 chr11 17057759 17057915 -104785941 - B1_Mur4 SINE Alu 0 150 2 1 715 203 88 0 29 chr11 17059265 17059300 -104784556 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 1 715 21 36 0 0 chr11 17059732 17059760 -104784096 + GC_rich Low_complexity Low_complexity 1 28 0 1 715 25 31 0 0 chr11 17061425 17061457 -104782399 + AT_rich Low_complexity Low_complexity 1 32 0 1 715 369 358 44 0 chr11 17061478 17061615 -104782241 - B3A SINE B2 -27 171 29 1 715 402 120 0 0 chr11 17061622 17061697 -104782159 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 715 593 164 104 52 chr11 17061786 17061921 -104781935 - B1_Mur4 SINE Alu 0 150 9 1 715 205 303 26 0 chr11 17062429 17062505 -104781351 + (TATG)n Simple_repeat Simple_repeat 1 78 0 1 715 856 246 73 32 chr11 17062519 17062767 -104781089 - B4A SINE B4 -18 274 17 1 715 531 231 0 0 chr11 17062830 17062934 -104780922 + B1_Mur2 SINE Alu 1 104 -45 1 715 358 344 45 19 chr11 17063117 17063274 -104780582 + RSINE1 SINE B4 3 163 -2 1 715 396 246 195 35 chr11 17064481 17064720 -104779136 + Tigger5 DNA MER2_type 2121 2389 -17 1 715 282 250 0 0 chr11 17064945 17065001 -104778855 + RSINE1 SINE B4 110 165 0 1 715 346 281 14 79 chr11 17065103 17065242 -104778614 + L1MA4 LINE L1 5745 5874 -426 1 715 1001 165 149 0 chr11 17065302 17065496 -104778360 - URR1A DNA MER1_type -3 223 1 1 715 378 0 0 0 chr11 17065519 17065561 -104778295 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 715 1524 178 132 24 chr11 17065733 17066113 -104777743 - MTC LTR MaLR 0 421 1 1 715 455 242 68 1 chr11 17066395 17066531 -104777325 + B1_Mur1 SINE Alu 1 144 -5 1 715 268 280 43 11 chr11 17067374 17067468 -104776388 - MLT-int LTR MaLR -1396 339 243 1 715 229 206 103 0 chr11 17067588 17067656 -104776200 - MLT-int LTR MaLR -1484 251 177 1 715 6346 60 63 0 chr11 17068122 17068966 -104774890 - L1_Mus3 LINE L1 0 6638 5742 1 715 198 0 0 0 chr11 17069166 17069188 -104774668 + (TGG)n Simple_repeat Simple_repeat 1 22 0 1 715 397 211 105 0 chr11 17071436 17071550 -104772306 - MTE2b LTR MaLR -2 377 252 1 715 325 270 113 44 chr11 17071566 17071725 -104772131 - MTE2b LTR MaLR -180 199 30 1 715 310 311 0 28 chr11 17071768 17071877 -104771979 - B4A SINE B4 0 292 187 1 715 356 223 160 28 chr11 17072738 17072844 -104771012 + PB1D7 SINE Alu 1 120 0 1 715 565 225 36 16 chr11 17072954 17073102 -104770754 + L1ME2z LINE L1 5677 5827 -617 1 715 2196 94 28 19 chr11 17073102 17073426 -104770430 - ORR1A2 LTR MaLR 0 327 1 1 715 399 231 44 0 chr11 17073439 17073530 -104770326 - B1F SINE Alu -52 97 3 1 715 303 320 48 0 chr11 17073530 17073542 -104770314 - ID_B1 SINE B4 -49 175 68 1 715 468 266 131 77 chr11 17073720 17073957 -104769899 - L1_Rod LINE L1 -50 5797 5541 1 715 342 0 0 0 chr11 17073957 17073995 -104769861 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 715 1168 68 7 0 chr11 17073998 17074145 -104769711 - B1_Mus1 SINE Alu 0 148 1 1 715 480 215 104 34 chr11 17074145 17074306 -104769550 - L1_Rod LINE L1 -581 5602 5368 1 715 1382 283 101 58 chr11 17074298 17075370 -104768486 - L1_Mur3 LINE L1 -1226 4654 3636 1 715 1201 170 4 22 chr11 17075372 17075600 -104768256 - URR1B DNA MER1_type 0 225 2 1 715 245 341 0 0 chr11 17075602 17075684 -104768172 - L1MD LINE L1 -2471 3675 3594 1 715 252 0 0 0 chr11 17075845 17075873 -104767983 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 715 1185 36 0 0 chr11 17075873 17076010 -104767846 - B1_Mus2 SINE Alu -10 137 1 1 715 377 212 62 0 chr11 17076610 17076690 -104767166 + B3 SINE B2 2 86 -130 1 715 333 151 22 55 chr11 17076686 17076777 -104767079 + PB1D9 SINE Alu 32 119 -1 1 715 287 243 52 78 chr11 17077136 17077252 -104766604 - PB1D10 SINE Alu 0 117 5 1 715 693 217 0 8 chr11 17077390 17077520 -104766336 - B1_Mur2 SINE Alu -5 144 16 1 715 261 250 57 65 chr11 17077538 17077662 -104766194 - PB1 SINE Alu -2 125 3 1 715 470 234 125 0 chr11 17078376 17078504 -104765352 + B1_Mus1 SINE Alu 5 148 0 1 715 5734 116 86 41 chr11 17078558 17078593 -104765263 - L1_Mur2 LINE L1 -542 5335 5296 1 715 4184 64 6 0 chr11 17078593 17079124 -104764732 - L1Md_F2 LINE L1 -12 6570 6037 1 715 5734 116 86 41 chr11 17079124 17080130 -104763726 - L1_Mur2 LINE L1 -582 5295 4248 1 715 557 138 0 0 chr11 17080138 17080225 -104763631 + Lx4A LINE L1 6869 6955 -103 1 715 287 310 142 0 chr11 17080296 17080409 -104763447 - ID_B1 SINE B4 -13 211 83 1 715 24 0 0 0 chr11 17080534 17080558 -104763298 + AT_rich Low_complexity Low_complexity 1 24 0 1 715 298 261 174 0 chr11 17081137 17081252 -104762604 + B1_Mur1 SINE Alu 15 149 0 1 715 272 253 38 0 chr11 17081758 17081837 -104762019 + ID_B1 SINE B4 141 222 -2 1 715 22 56 0 0 chr11 17082311 17082347 -104761509 + AT_rich Low_complexity Low_complexity 1 36 0 1 715 209 119 24 0 chr11 17082423 17082465 -104761391 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1 715 264 30 0 0 chr11 17083007 17083040 -104760816 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 715 473 237 49 62 chr11 17083063 17083194 -104760662 - B1_Mur1 SINE Alu -7 142 13 1 715 1749 136 126 3 chr11 17083194 17083527 -104760329 - ORR1C1 LTR MaLR -4 374 1 1 715 473 237 49 62 chr11 17083527 17083539 -104760317 - B1_Mur1 SINE Alu -137 12 1 1 715 505 281 67 96 chr11 17083591 17083633 -104760223 - B4 SINE B4 -11 281 225 1 715 977 64 0 7 chr11 17083633 17083644 -104760212 - B1_Mus1 SINE Alu -3 145 135 1 715 624 27 0 0 chr11 17083644 17083718 -104760138 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 715 977 64 0 7 chr11 17083718 17083847 -104760009 - B1_Mus1 SINE Alu -14 134 6 1 715 505 276 83 64 chr11 17083847 17083943 -104759913 - B4 SINE B4 -68 224 3 1 715 255 269 0 0 chr11 17084140 17084192 -104759664 + polypyrimidine Low_complexity Low_complexity 4 55 0 1 715 227 300 0 0 chr11 17084203 17084263 -104759593 + PB1D7 SINE Alu 55 114 -6 1 715 507 228 148 28 chr11 17084571 17084747 -104759109 - B3A SINE B2 0 198 2 1 715 384 277 131 62 chr11 17085213 17085533 -104758323 - L1_Mur3 LINE L1 -332 5548 5207 1 715 710 131 84 35 chr11 17085619 17085761 -104758095 - B1_Mur4 SINE Alu 0 150 2 1 715 396 257 239 59 chr11 17087062 17087351 -104756505 - Lx8 LINE L1 -13 7460 7120 1 715 362 280 127 0 chr11 17087712 17087830 -104756026 - RSINE1 SINE B4 -30 135 3 1 715 359 183 0 0 chr11 17088076 17088136 -104755720 - B1_Mur1 SINE Alu -27 122 63 1 715 246 314 221 0 chr11 17088712 17088737 -104755119 + B4 SINE B4 64 178 -114 1 715 462 202 29 9 chr11 17088737 17088842 -104755014 + PB1D9 SINE Alu 13 119 -1 1 715 537 259 7 35 chr11 17088865 17089009 -104754847 + B3A SINE B2 4 143 -55 1 715 273 57 0 0 chr11 17089773 17089808 -104754048 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 715 717 220 30 0 chr11 17091184 17091316 -104752540 + B1_Mur4 SINE Alu 2 137 -13 1 715 787 312 93 16 chr11 17091427 17091867 -104751989 - RMER5 LTR ERV1 -11 523 50 1 715 349 164 164 0 chr11 17091966 17092039 -104751817 + PB1D9 SINE Alu 34 118 -2 1 715 27 29 0 0 chr11 17092120 17092154 -104751702 + AT_rich Low_complexity Low_complexity 1 34 0 1 715 288 335 39 26 chr11 17092723 17092879 -104750977 + Tigger5 DNA MER2_type 2176 2333 -73 1 715 1074 75 56 0 chr11 17093928 17094088 -104749768 + B2_Mm2 SINE B2 1 169 -26 1 715 736 116 71 0 chr11 17094986 17095098 -104748758 + PB1D9 SINE Alu 1 120 0 1 715 594 308 83 8 chr11 17095223 17095488 -104748368 - B4A SINE B4 -2 290 6 1 715 670 185 0 37 chr11 17095677 17095812 -104748044 + B3 SINE B2 1 130 -86 1 715 341 232 129 20 chr11 17096069 17096170 -104747686 + RSINE1 SINE B4 15 126 -39 1 715 738 169 82 25 chr11 17096241 17096399 -104747457 - MTD LTR MaLR -251 168 2 1 715 799 293 82 10 chr11 17096445 17096738 -104747118 - MTE2b LTR MaLR -21 358 45 1 715 250 361 42 0 chr11 17096749 17096868 -104746988 - MTE-int LTR MaLR -1 1579 1456 1 715 716 237 118 53 chr11 17097058 17097303 -104746553 - MTD LTR MaLR 0 419 159 1 715 246 381 8 0 chr11 17097404 17097522 -104746334 - MTB_Mm LTR MaLR -148 259 141 1 715 282 214 29 0 chr11 17097577 17097647 -104746209 + B4A SINE B4 203 274 -18 1 715 1314 193 107 0 chr11 17097907 17098187 -104745669 - MTD LTR MaLR -91 328 19 2 715 180 0 0 0 chr11 17098201 17098221 -104745635 + (A)n Simple_repeat Simple_repeat 1 20 0 2 715 201 159 0 0 chr11 17098609 17098653 -104745203 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 715 277 191 28 56 chr11 17100495 17100567 -104743289 - B1_Mur3 SINE Alu -78 71 2 2 715 447 237 51 15 chr11 17100859 17100996 -104742860 + L1M3 LINE L1 5302 5443 -737 2 715 402 284 63 0 chr11 17102545 17102672 -104741184 + B1F1 SINE Alu 7 141 -8 2 715 464 216 35 0 chr11 17102676 17102792 -104741064 + B3A SINE B2 1 120 -78 2 715 473 240 29 9 chr11 17102867 17102972 -104740884 + PB1D9 SINE Alu 5 111 -9 2 715 789 237 41 15 chr11 17102981 17103178 -104740678 + B3 SINE B2 9 210 -6 2 715 385 246 73 0 chr11 17104816 17104926 -104738930 - PB1D7 SINE Alu 0 120 3 2 715 527 229 8 39 chr11 17104944 17105071 -104738785 + RSINE1 SINE B4 8 130 -35 2 715 1350 304 111 9 chr11 17105421 17106318 -104737538 + Lx8 LINE L1 6140 7179 -294 2 715 2222 195 143 13 chr11 17106485 17107088 -104736768 + Lx9 LINE L1 6959 7639 -5 2 715 315 240 247 0 chr11 17107110 17107256 -104736600 + L1ME2 LINE L1 5696 5877 -287 2 715 363 231 151 19 chr11 17110035 17110141 -104733715 + PB1D9 SINE Alu 1 120 0 2 715 451 16 48 0 chr11 17110141 17110204 -104733652 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 2 715 183 114 0 0 chr11 17110612 17110647 -104733209 + (A)n Simple_repeat Simple_repeat 1 35 0 2 715 180 0 0 0 chr11 17111197 17111217 -104732639 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 715 201 74 0 0 chr11 17111278 17111305 -104732551 + (TCCCG)n Simple_repeat Simple_repeat 3 29 0 2 715 189 0 0 0 chr11 17113150 17113171 -104730685 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 715 210 266 49 25 chr11 17113171 17113252 -104730604 - PB1D10 SINE Alu -23 94 12 2 715 235 301 164 26 chr11 17113563 17113770 -104730086 + L2c LINE L2 3119 3386 -1 2 715 1222 62 14 0 chr11 17114532 17114677 -104729179 + B1_Mus2 SINE Alu 1 147 0 2 715 988 62 8 0 chr11 17114679 17114809 -104729047 + B1_Mus2 SINE Alu 8 138 -9 2 715 763 210 27 27 chr11 17114924 17115059 -104728797 + B1_Mur2 SINE Alu 2 140 -9 2 715 207 88 0 0 chr11 17115059 17115093 -104728763 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 715 763 210 27 27 chr11 17115093 17115104 -104728752 + B1_Mur2 SINE Alu 141 148 -1 2 715 1088 241 0 9 chr11 17115124 17115338 -104728518 + B3 SINE B2 1 212 -4 2 715 657 279 78 39 chr11 17116554 17116785 -104727071 + B4A SINE B4 31 270 -22 2 715 474 33 0 0 chr11 17116806 17116866 -104726990 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 715 417 54 0 0 chr11 17116922 17116978 -104726878 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 715 363 23 0 0 chr11 17117035 17117079 -104726777 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 715 417 54 0 0 chr11 17117135 17117191 -104726665 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 715 363 23 0 0 chr11 17117248 17117292 -104726564 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 715 429 54 0 0 chr11 17117349 17117405 -104726451 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 715 405 86 0 0 chr11 17117462 17117520 -104726336 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 715 360 0 0 0 chr11 17117577 17117617 -104726239 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 715 390 74 0 0 chr11 17117674 17117728 -104726128 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 715 234 62 0 0 chr11 17117785 17117817 -104726039 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 715 210 37 0 0 chr11 17117840 17117867 -104725989 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 715 491 296 0 0 chr11 17118328 17118443 -104725413 - B1F SINE Alu -26 123 9 2 715 641 207 218 0 chr11 17118569 17118743 -104725113 + B3 SINE B2 5 216 0 2 715 296 136 31 78 chr11 17118759 17118823 -104725033 + PB1 SINE Alu 70 147 -2 2 715 350 208 163 26 chr11 17119306 17119459 -104724397 + Lx9 LINE L1 7469 7642 -2 2 715 887 152 0 6 chr11 17119866 17120031 -104723825 + CT-rich Low_complexity Low_complexity 2 165 0 2 715 541 203 27 80 chr11 17120051 17120201 -104723655 - B1_Mur1 SINE Alu -3 146 5 2 715 378 74 0 0 chr11 17120604 17120658 -104723198 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 2 715 641 234 0 0 chr11 17120658 17120786 -104723070 - B1_Mur4 SINE Alu -11 139 12 2 715 208 135 0 0 chr11 17120891 17120928 -104722928 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 715 431 301 20 33 chr11 17120978 17121129 -104722727 - RSINE1 SINE B4 -2 163 15 2 715 186 240 0 0 chr11 17121149 17121199 -104722657 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 715 486 56 0 66 chr11 17121281 17121357 -104722499 + LSU-rRNA_Hsa rRNA rRNA 2769 2839 -2196 2 715 1265 65 0 0 chr11 17121335 17121490 -104722366 + LSU-rRNA_Hsa rRNA rRNA 4332 4486 -549 2 715 271 298 73 16 chr11 17121490 17121527 -104722329 + B4A SINE B4 44 87 -205 2 715 549 144 0 0 chr11 17121527 17121617 -104722239 + B1_Mus1 SINE Alu 3 92 -56 2 715 223 244 42 104 chr11 17121617 17121632 -104722224 - BC1_Mm scRNA scRNA -61 91 2 2 715 617 86 0 0 chr11 17121632 17121713 -104722143 - B2_Mm2 SINE B2 -113 82 2 2 715 215 61 30 0 chr11 17121778 17121811 -104722045 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 2 715 255 205 154 0 chr11 17121839 17121917 -104721939 - L1M2 LINE L1 -462 5838 5749 2 715 281 279 44 0 chr11 17121922 17122058 -104721798 - L1M2 LINE L1 -1027 5116 4975 2 715 1157 131 5 34 chr11 17123188 17123393 -104720463 + Lx LINE L1 6456 6654 0 2 715 234 91 0 0 chr11 17125120 17125153 -104718703 + (T)n Simple_repeat Simple_repeat 1 33 0 2 715 1271 41 0 7 chr11 17125153 17125300 -104718556 - B1_Mus2 SINE Alu 0 147 2 2 715 438 200 24 0 chr11 17125512 17125597 -104718259 - B1_Mur3 SINE Alu -62 87 1 2 715 506 210 48 16 chr11 17125619 17125761 -104718095 - PB1 SINE Alu 0 149 4 2 715 1180 197 9 27 chr11 17127882 17128101 -104715755 + B3 SINE B2 2 216 0 2 715 27 29 0 0 chr11 17128468 17128502 -104715354 + AT_rich Low_complexity Low_complexity 1 34 0 2 715 547 192 67 0 chr11 17129073 17129177 -104714679 - B1_Mus2 SINE Alu -36 111 1 2 715 320 265 18 89 chr11 17129081 17129193 -104714663 - MT2B LTR ERVL -343 258 155 2 715 399 249 20 0 chr11 17129211 17129335 -104714521 - L1_Mur3 LINE L1 -1798 4345 4192 2 715 238 320 102 0 chr11 17129330 17129458 -104714398 + L1_Mur3 LINE L1 1447 1587 -4293 2 715 346 211 156 10 chr11 17130161 17130257 -104713599 + PB1D7 SINE Alu 5 114 -6 2 715 527 76 30 24 chr11 17130581 17130671 -104713185 + B1_Mus2 SINE Alu 16 147 0 2 715 405 0 0 0 chr11 17131030 17131075 -104712781 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 715 231 321 191 9 chr11 17131078 17131188 -104712668 - B4 SINE B4 -18 274 145 2 715 221 263 39 26 chr11 17131244 17131322 -104712534 - B4 SINE B4 -206 86 8 2 715 311 164 0 16 chr11 17131646 17131708 -104712148 - B1_Mur1 SINE Alu 0 149 89 2 715 213 121 0 0 chr11 17132141 17132174 -104711682 + (A)n Simple_repeat Simple_repeat 1 33 0 2 715 500 252 0 0 chr11 17133183 17133282 -104710574 + PB1 SINE Alu 24 122 -5 2 715 468 331 14 14 chr11 17133293 17133437 -104710419 + B3A SINE B2 52 195 -3 2 715 25 0 0 0 chr11 17133765 17133790 -104710066 + AT_rich Low_complexity Low_complexity 1 25 0 2 715 220 228 194 81 chr11 17134036 17134160 -104709696 + RSINE1 SINE B4 24 161 -4 2 715 23 0 0 0 chr11 17134190 17134213 -104709643 + AT_rich Low_complexity Low_complexity 1 23 0 2 715 3750 38 111 30 chr11 17134386 17134926 -104708930 + RLTR6_Mm LTR ERV1 1 584 -70 2 715 224 245 175 87 chr11 17135007 17135110 -104708746 - PB1D10 SINE Alu -5 112 1 2 715 398 188 354 0 chr11 17135116 17135212 -104708644 - B1_Mur3 SINE Alu -19 130 1 2 715 679 212 88 7 chr11 17135380 17135527 -104708329 + B3A SINE B2 1 159 -39 2 715 402 57 0 0 chr11 17135530 17135583 -104708273 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 715 21 36 0 0 chr11 17135593 17135621 -104708235 + AT_rich Low_complexity Low_complexity 1 28 0 2 715 1833 171 86 22 chr11 17135629 17135989 -104707867 + ORR1C2 LTR MaLR 2 384 0 2 715 252 306 183 59 chr11 17136100 17136253 -104707603 - MLT1G1 LTR MaLR -302 277 106 2 715 994 41 139 0 chr11 17137846 17137968 -104705888 + B1_Mus1 SINE Alu 1 139 -9 2 715 243 0 0 0 chr11 17137968 17137995 -104705861 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 715 1458 51 17 0 chr11 17138806 17138981 -104704875 + B2_Mm1t SINE B2 2 179 -14 2 715 251 135 0 0 chr11 17139427 17139464 -104704392 + tRNA-Val-GTG tRNA tRNA 1 37 -39 2 715 2740 165 21 40 chr11 17139465 17140193 -104703663 + L1_Mur3 LINE L1 1057 1771 -4106 2 715 8254 50 0 0 chr11 17140197 17141188 -104702668 - L1Md_T LINE L1 0 6582 5592 2 715 1311 184 16 12 chr11 17141184 17141432 -104702424 + L1_Mur3 LINE L1 1757 2005 -3875 2 715 395 129 0 0 chr11 17141438 17141500 -104702356 + L1_Mur3 LINE L1 3333 3394 -2483 2 715 350 185 0 122 chr11 17141486 17141560 -104702296 + Lx4B LINE L1 6713 6777 -281 2 715 330 67 0 0 chr11 17141569 17141614 -104702242 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 715 513 0 0 0 chr11 17141614 17141670 -104702186 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 715 1358 233 103 8 chr11 17141670 17142038 -104701818 + RCHARR1 DNA MER1_type 365 767 -207 2 715 306 265 44 0 chr11 17142041 17142109 -104701747 + B3A SINE B2 98 168 -30 2 715 641 76 11 0 chr11 17142109 17142201 -104701655 + (TC)n Simple_repeat Simple_repeat 1 93 0 2 715 195 42 0 0 chr11 17142201 17142224 -104701632 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 715 233 309 60 0 chr11 17142365 17142449 -104701407 + L1M5 LINE L1 5522 5610 -630 2 715 864 270 131 32 chr11 17142558 17142902 -104700954 + Lx8 LINE L1 6782 7159 -314 2 715 387 0 0 0 chr11 17143083 17143126 -104700730 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 715 2340 120 9 9 chr11 17143151 17143480 -104700376 - ORR1A4 LTR MaLR 0 329 1 2 715 309 291 374 72 chr11 17144140 17144413 -104699443 - RMER15 LTR ERVL -194 381 26 2 715 3031 177 55 10 chr11 17144455 17145050 -104698806 - ORR1B2-int LTR MaLR -887 622 1 2 715 1826 189 26 10 chr11 17145050 17145409 -104698447 - ORR1B2 LTR MaLR 0 370 24 2 715 1066 127 201 18 chr11 17145409 17145633 -104698223 + ORR1C1 LTR MaLR 106 370 -8 2 715 255 312 63 18 chr11 17145757 17145868 -104697988 - ORR1E LTR MaLR -225 134 19 2 715 463 257 64 9 chr11 17145948 17146058 -104697798 + PB1D10 SINE Alu 1 116 -1 2 715 192 368 17 26 chr11 17146075 17146192 -104697664 - MIR SINE MIR -27 235 120 3 715 3929 143 64 7 chr11 17146210 17146916 -104696940 + RMER6A LTR ERVK 3 748 -8 3 715 613 265 109 0 chr11 17147114 17147261 -104696595 + RSINE1 SINE B4 3 165 0 3 715 215 314 195 11 chr11 17147298 17147385 -104696471 + B3A SINE B2 2 104 -94 3 715 1654 178 92 43 chr11 17147440 17147809 -104696047 + RMER2 LTR ERV1 1 387 -180 3 715 27 0 0 0 chr11 17147812 17147839 -104696017 + AT_rich Low_complexity Low_complexity 1 27 0 3 715 248 85 169 79 chr11 17147839 17147893 -104695963 - L1_Mus3 LINE L1 0 6638 6575 3 715 3882 50 42 0 chr11 17147893 17148349 -104695507 + MT2C_Mm LTR ERVL 1 475 0 3 715 248 85 169 79 chr11 17148349 17148383 -104695473 - L1_Mus3 LINE L1 -64 6574 6542 3 715 231 310 34 11 chr11 17148383 17148471 -104695385 + RMER2 LTR ERV1 356 445 -122 3 715 897 204 193 0 chr11 17148895 17149076 -104694780 + B3 SINE B2 1 216 0 3 715 363 293 20 0 chr11 17149612 17149711 -104694145 + MLT1C LTR MaLR 365 465 -2 3 715 353 341 130 16 chr11 17149940 17150193 -104693663 - MLT1H LTR MaLR -233 316 35 3 715 631 214 0 8 chr11 17150358 17150476 -104693380 + B1_Mur3 SINE Alu 17 133 -16 3 715 204 200 0 0 chr11 17150476 17150521 -104693335 + G-rich Low_complexity Low_complexity 6 50 0 3 715 360 333 60 39 chr11 17150832 17151113 -104692743 - Tigger12A DNA MER2_type -341 450 164 3 715 733 274 71 0 chr11 17151855 17152052 -104691804 - B4A SINE B4 -56 236 26 3 715 226 67 44 0 chr11 17152053 17152098 -104691758 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 715 26 0 0 0 chr11 17152138 17152164 -104691692 + AT_rich Low_complexity Low_complexity 1 26 0 3 715 1259 171 15 0 chr11 17152196 17152401 -104691455 + B3 SINE B2 9 216 0 3 715 703 250 55 55 chr11 17152434 17152688 -104691168 - Lx8 LINE L1 -16 7457 7204 3 715 1187 184 14 5 chr11 17152686 17152899 -104690957 - Lx6 LINE L1 -1037 6423 6209 3 715 3189 120 121 4 chr11 17152899 17153426 -104690430 + MT2B LTR ERVL 1 589 -12 3 715 800 214 69 13 chr11 17153433 17153665 -104690191 - Lx7 LINE L1 -1469 6227 5983 3 715 926 163 0 65 chr11 17153669 17153853 -104690003 - ORR1A4 LTR MaLR -157 172 1 3 715 1831 132 30 1 chr11 17153855 17154184 -104689672 - Lx6 LINE L1 -1508 5952 5598 3 715 658 289 163 65 chr11 17154184 17154273 -104689583 + MT2B LTR ERVL 1 129 -472 3 715 772 156 0 16 chr11 17154273 17154397 -104689459 - B1_Mus1 SINE Alu 0 148 27 3 715 658 289 163 65 chr11 17154397 17154676 -104689180 + MT2B LTR ERVL 130 540 -61 3 715 486 0 0 0 chr11 17154684 17154738 -104689118 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3 715 589 255 27 27 chr11 17154887 17154913 -104688943 + ID_B1 SINE B4 66 214 -10 3 715 896 98 16 0 chr11 17154913 17155036 -104688820 + B1_Mus2 SINE Alu 13 137 -10 3 715 372 279 11 11 chr11 17155240 17155327 -104688529 + RSINE1 SINE B4 2 88 -77 3 715 644 298 15 20 chr11 17155635 17155834 -104688022 + B3A SINE B2 1 198 0 3 715 1308 41 0 0 chr11 17155847 17155993 -104687863 + B1_Mus2 SINE Alu 2 147 0 3 715 180 0 0 0 chr11 17155993 17156013 -104687843 + (A)n Simple_repeat Simple_repeat 1 20 0 3 715 310 55 54 18 chr11 17156051 17156107 -104687749 + (GGAGAA)n Simple_repeat Simple_repeat 3 60 0 3 715 1703 169 162 8 chr11 17156164 17156521 -104687335 - MTC LTR MaLR -8 413 2 3 715 249 274 232 0 chr11 17156521 17156616 -104687240 + PB1D10 SINE Alu 1 117 0 3 715 1925 172 80 49 chr11 17156906 17157365 -104686491 + Lx3C LINE L1 6512 7058 0 3 715 395 227 8 0 chr11 17157371 17157499 -104686357 + GA-rich Low_complexity Low_complexity 2 130 0 3 715 451 277 93 73 chr11 17158052 17158070 -104685786 - ID_B1 SINE B4 -41 251 189 3 715 751 183 28 0 chr11 17158070 17158212 -104685644 - B1_Mus2 SINE Alu 0 147 2 3 715 451 277 93 73 chr11 17158212 17158247 -104685609 - ID_B1 SINE B4 -41 188 53 3 715 790 204 73 5 chr11 17159060 17159245 -104684611 - B3A SINE B2 -24 192 3 3 715 210 325 0 0 chr11 17159284 17159361 -104684495 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 715 429 20 0 0 chr11 17159532 17159582 -104684274 + (TGG)n Simple_repeat Simple_repeat 1 50 0 3 715 588 225 84 35 chr11 17160110 17160253 -104683603 - RSINE1 SINE B4 -7 158 9 3 715 2021 99 50 0 chr11 17160639 17160962 -104682894 - RLTR22_Mur LTR ERVK -1016 832 494 3 715 343 254 14 14 chr11 17161382 17161454 -104682402 + ID4_ SINE ID 1 72 -11 3 715 352 188 15 15 chr11 17161392 17161457 -104682399 + tRNA-Ala-GCY_ tRNA tRNA 5 69 -6 3 715 233 337 66 18 chr11 17161813 17161979 -104681877 - MIR3 SINE MIR -31 177 4 3 715 331 236 71 54 chr11 17166208 17166320 -104677536 - PB1D7 SINE Alu -2 118 5 3 715 192 274 48 16 chr11 17166357 17166420 -104677436 + MIRm SINE MIR 157 221 -55 3 715 23 0 0 0 chr11 17168603 17168626 -104675230 + AT_rich Low_complexity Low_complexity 1 23 0 3 715 1311 87 54 11 chr11 17169213 17169398 -104674458 - B2_Mm2 SINE B2 0 195 3 3 715 213 269 39 0 chr11 17169452 17169504 -104674352 - ID4_ SINE ID -2 81 28 3 715 210 71 0 0 chr11 17169634 17169662 -104674194 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 3 715 302 273 202 8 chr11 17169662 17169715 -104674141 - HAL1-3A_ME LINE L1 -419 2439 2384 3 715 1320 73 0 0 chr11 17169715 17169892 -104673964 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 3 715 302 273 202 8 chr11 17169892 17169967 -104673889 - HAL1-3A_ME LINE L1 -475 2383 2286 3 715 700 246 22 0 chr11 17169976 17170114 -104673742 - B1F2 SINE Alu -5 144 4 3 715 905 224 29 0 chr11 17170137 17170347 -104673509 - B3 SINE B2 0 216 1 3 716 614 182 41 8 chr11 17171515 17171637 -104672219 - RLTR20B1 LTR ERVK 0 563 438 3 716 1158 181 0 24 chr11 17171634 17171844 -104672012 - RLTR20B1 LTR ERVK -358 205 1 3 716 256 296 14 14 chr11 17172174 17172246 -104671610 + MLT1C LTR MaLR 363 434 -33 3 716 219 69 0 0 chr11 17172897 17172926 -104670930 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 716 1296 29 0 0 chr11 17174059 17174199 -104669657 + B1_Mus1 SINE Alu 1 140 -8 3 716 270 0 0 0 chr11 17174199 17174229 -104669627 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 3 716 269 24 0 68 chr11 17174229 17174262 -104669594 + B1_Mm SINE Alu 107 139 -8 3 716 258 32 0 0 chr11 17174262 17174293 -104669563 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 3 716 7748 65 16 3 chr11 17174619 17176108 -104667748 - L1_Mus1 LINE L1 0 6567 5060 3 716 1220 224 94 69 chr11 17176108 17176501 -104667355 + MTD LTR MaLR 3 405 -14 3 716 267 31 0 0 chr11 17176607 17176639 -104667217 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 716 351 197 33 0 chr11 17176670 17176731 -104667125 - B3 SINE B2 -126 90 28 3 716 540 231 34 8 chr11 17177003 17177121 -104666735 + RSINE1 SINE B4 3 123 -42 3 716 633 14 0 0 chr11 17177121 17177195 -104666661 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 716 284 281 12 0 chr11 17177513 17177595 -104666261 - L1MC2 LINE L1 -437 5907 5825 3 716 1558 64 16 0 chr11 17178523 17178711 -104665145 - B2_Mm1t SINE B2 -1 192 2 3 716 446 261 153 94 chr11 17179058 17179333 -104664523 + B4 SINE B4 2 292 0 3 716 309 109 0 0 chr11 17179341 17179387 -104664469 + (CCA)n Simple_repeat Simple_repeat 2 47 0 3 716 423 235 196 0 chr11 17179451 17179553 -104664303 + ID_B1 SINE B4 94 215 -9 3 716 204 97 0 0 chr11 17179934 17179965 -104663891 + (T)n Simple_repeat Simple_repeat 1 31 0 3 716 397 224 83 60 chr11 17180173 17180341 -104663515 + ID_B1 SINE B4 1 216 -8 3 716 1116 246 32 95 chr11 17180778 17181178 -104662678 - MTE2b LTR MaLR -4 375 1 3 716 279 0 0 0 chr11 17181712 17181743 -104662113 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 716 207 0 0 0 chr11 17181798 17181821 -104662035 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 716 1279 56 0 0 chr11 17181825 17181968 -104661888 - B1_Mus1 SINE Alu -5 143 1 3 716 231 329 0 12 chr11 17182037 17182117 -104661739 + (CATA)n Simple_repeat Simple_repeat 4 82 0 3 716 486 274 0 0 chr11 17182123 17182291 -104661565 + (CA)n Simple_repeat Simple_repeat 1 168 0 3 716 949 302 54 27 chr11 17182295 17182778 -104661078 - L1_Rod LINE L1 -138 5709 5214 3 716 8359 37 1 1 chr11 17182759 17184015 -104659841 - L1Md_F2 LINE L1 0 6582 5328 3 716 693 0 0 0 chr11 17184078 17184155 -104659701 + (CAAAC)n Simple_repeat Simple_repeat 4 80 0 3 716 622 256 19 68 chr11 17184338 17184543 -104659313 - B3A SINE B2 0 198 4 3 716 186 323 46 46 chr11 17185467 17185597 -104658259 + MER5B DNA MER1_type 41 170 -8 3 716 419 255 219 36 chr11 17186001 17186225 -104657631 + Lx8 LINE L1 6751 7015 -458 3 716 270 226 0 16 chr11 17186226 17186289 -104657567 - MTE2b LTR MaLR -317 62 1 3 716 1049 264 72 0 chr11 17186447 17186754 -104657102 + Lx8 LINE L1 7048 7376 -97 3 716 289 43 43 0 chr11 17186830 17186877 -104656979 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 716 298 228 28 3 chr11 17188556 17188637 -104655219 - PB1D10 SINE Alu -1 119 34 3 716 395 328 109 58 chr11 17189452 17189938 -104653918 + L1MEg LINE L1 663 1173 -5069 3 716 278 188 0 0 chr11 17189945 17189993 -104653863 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 716 495 263 16 0 chr11 17189994 17190375 -104653481 + (CATA)n Simple_repeat Simple_repeat 1 387 0 3 716 305 173 0 19 chr11 17190400 17190453 -104653403 + HAL1-3A_ME LINE L1 1976 2027 -831 3 716 688 295 72 4 chr11 17190563 17190825 -104653031 + Lx9 LINE L1 7081 7360 -284 3 716 699 236 7 45 chr11 17191027 17191182 -104652674 + B1_Mur2 SINE Alu 1 149 0 3 716 268 299 173 0 chr11 17191382 17191596 -104652260 + L1MEg LINE L1 2550 2800 -3346 3 716 336 24 0 0 chr11 17192009 17192050 -104651806 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 716 316 253 66 0 chr11 17192734 17192825 -104651031 - Lx8 LINE L1 -348 7125 7029 3 716 620 188 67 25 chr11 17192851 17193018 -104650838 - RLTR31_Mur LTR ERVK -186 255 2 4 716 5564 194 50 56 chr11 17193057 17194410 -104649446 - RMER3D-int LTR ERVK -116 2726 1382 4 716 1941 223 62 55 chr11 17194537 17194924 -104648932 - RMER3D-int LTR ERVK -2195 647 472 4 716 3741 63 37 7 chr11 17194924 17195385 -104648471 + MT2C_Mm LTR ERVL 1 475 0 4 716 1941 216 72 47 chr11 17195385 17195835 -104648021 - RMER3D-int LTR ERVK -2371 471 10 4 716 22 0 0 0 chr11 17195852 17195874 -104647982 + AT_rich Low_complexity Low_complexity 1 22 0 4 716 1708 216 80 19 chr11 17195874 17196285 -104647571 - RLTR17 LTR ERVK -77 615 180 4 716 1771 288 99 8 chr11 17196288 17196985 -104646871 - Lx8 LINE L1 -641 7003 6207 3 716 920 173 0 6 chr11 17197048 17197228 -104646628 + CT-rich Low_complexity Low_complexity 2 180 0 4 716 23 54 0 0 chr11 17198481 17198518 -104645338 + AT_rich Low_complexity Low_complexity 1 37 0 4 716 944 244 49 125 chr11 17198556 17199038 -104644818 - Lx8 LINE L1 -1637 6007 5494 3 716 524 182 34 9 chr11 17199053 17199182 -104644674 - Lx8 LINE L1 -2267 3876 3719 3 716 1199 267 151 18 chr11 17199817 17200214 -104643642 + Lx8 LINE L1 6211 6660 -813 4 716 336 234 157 9 chr11 17200417 17200525 -104643331 - L1MA8 LINE L1 -394 5897 5774 4 716 698 69 10 0 chr11 17200526 17200627 -104643229 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 4 716 478 302 79 24 chr11 17200639 17200893 -104642963 - L1MA8 LINE L1 -515 5776 5509 4 716 1433 146 158 4 chr11 17201250 17201504 -104642352 - MTC LTR MaLR -123 298 6 4 716 370 335 56 53 chr11 17201617 17201901 -104641955 + Lx8 LINE L1 7187 7471 -2 4 716 200 213 0 0 chr11 17201995 17202042 -104641814 + T-rich Low_complexity Low_complexity 1 47 0 4 716 1821 166 70 9 chr11 17202194 17202535 -104641321 + MTC LTR MaLR 6 367 -54 4 716 831 182 23 0 chr11 17202681 17202813 -104641043 + B1_Mur4 SINE Alu 1 135 -15 4 716 800 20 10 0 chr11 17202819 17202917 -104640939 + (CAAAC)n Simple_repeat Simple_repeat 2 100 0 4 716 197 211 28 0 chr11 17203691 17203762 -104640094 + CT-rich Low_complexity Low_complexity 2 74 0 4 716 794 233 7 7 chr11 17203833 17203980 -104639876 - B1_Mur1 SINE Alu 0 149 3 4 716 317 270 134 8 chr11 17204001 17204128 -104639728 - L2a LINE L2 -9 3417 3275 4 716 537 244 102 20 chr11 17207371 17207568 -104636288 + L1MD3 LINE L1 7783 7995 0 4 716 264 59 0 0 chr11 17207623 17207657 -104636199 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 4 716 423 0 0 0 chr11 17208017 17208064 -104635792 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 716 264 122 0 0 chr11 17208064 17208105 -104635751 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 716 328 357 61 54 chr11 17208114 17208213 -104635643 - RSINE1 SINE B4 -14 151 48 4 716 1611 179 25 164 chr11 17208213 17208646 -104635210 - ORR1D1 LTR MaLR -1 373 1 4 716 328 357 61 54 chr11 17208646 17208694 -104635162 - RSINE1 SINE B4 -118 47 3 4 716 298 124 77 13 chr11 17208813 17208968 -104634888 + (TA)n Simple_repeat Simple_repeat 2 166 0 4 716 390 85 0 0 chr11 17210094 17210153 -104633703 + (TATG)n Simple_repeat Simple_repeat 4 62 0 4 716 186 258 0 0 chr11 17210164 17210226 -104633630 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 716 23 0 0 0 chr11 17210959 17210982 -104632874 + AT_rich Low_complexity Low_complexity 1 23 0 4 716 214 344 127 44 chr11 17211183 17211411 -104632445 - L2b LINE L2 -5 3370 3124 4 716 4359 154 15 9 chr11 17212166 17212899 -104630957 - Lx LINE L1 0 6654 5918 4 716 1660 154 0 4 chr11 17212899 17213147 -104630709 - L1VL4 LINE L1 -6054 248 1 4 716 963 332 88 44 chr11 17213288 17213797 -104630059 + MLT1G LTR MaLR 18 577 -14 4 716 229 241 33 33 chr11 17213902 17213962 -104629894 - ID4_ SINE ID -11 72 13 4 716 30 27 0 0 chr11 17214289 17214326 -104629530 + AT_rich Low_complexity Low_complexity 1 37 0 4 716 2427 138 61 23 chr11 17214335 17214729 -104629127 - Lx3B LINE L1 -4 6969 6561 4 716 192 48 71 0 chr11 17214738 17214780 -104629076 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 4 716 15854 79 15 16 chr11 17214780 17215378 -104628478 - MusHAL1 LINE L1 -419 2934 2333 4 716 1371 62 0 0 chr11 17215378 17215556 -104628300 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 4 716 15854 79 15 16 chr11 17215556 17215843 -104628013 - MusHAL1 LINE L1 -1021 2332 2035 4 716 309 51 0 0 chr11 17215843 17215882 -104627974 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 716 1140 88 0 0 chr11 17215882 17216019 -104627837 - B1_Mm SINE Alu -10 137 1 4 716 15854 81 14 14 chr11 17216019 17217646 -104626210 - MusHAL1 LINE L1 -1319 2034 423 4 716 366 230 193 50 chr11 17218485 17218604 -104625252 - B1_Mur2 SINE Alu -12 137 2 4 716 1685 218 75 35 chr11 17218780 17219179 -104624677 - MTD LTR MaLR 0 419 5 4 716 241 435 34 17 chr11 17219209 17219326 -104624530 + LTR16E2 LTR ERVL 221 339 -229 4 716 357 278 28 85 chr11 17219388 17219494 -104624362 + B4A SINE B4 1 100 -192 4 716 405 0 0 0 chr11 17219650 17219695 -104624161 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 716 208 167 0 45 chr11 17219735 17219762 -104624094 + polypyrimidine Low_complexity Low_complexity 17 42 0 4 716 1227 94 0 0 chr11 17219762 17219942 -104623914 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 716 208 167 0 45 chr11 17219942 17219958 -104623898 + polypyrimidine Low_complexity Low_complexity 1 16 0 4 716 308 284 108 0 chr11 17219966 17220040 -104623816 - RSINE1 SINE B4 -31 134 53 4 716 254 349 9 19 chr11 17220079 17220187 -104623669 + LTR16E2 LTR ERVL 446 552 -16 4 716 1612 213 97 33 chr11 17220322 17220715 -104623141 + MTD LTR MaLR 1 418 -1 4 716 230 253 13 26 chr11 17220998 17221075 -104622781 + CT-rich Low_complexity Low_complexity 5 80 0 4 716 306 341 111 39 chr11 17221193 17221373 -104622483 - MIR SINE MIR -43 225 33 4 716 216 97 0 0 chr11 17222839 17222870 -104620986 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 4 716 457 295 98 0 chr11 17222898 17223020 -104620836 + B4 SINE B4 24 157 -135 4 716 388 268 52 85 chr11 17223101 17223169 -104620687 - MLT1C LTR MaLR -8 459 394 4 716 240 35 0 0 chr11 17223169 17223198 -104620658 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 716 388 268 52 85 chr11 17223198 17223341 -104620515 - MLT1C LTR MaLR -74 393 255 4 716 901 216 17 6 chr11 17223422 17223594 -104620262 + B3 SINE B2 1 174 -42 4 716 246 196 0 0 chr11 17223607 17223699 -104620157 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 716 360 47 0 0 chr11 17223706 17223749 -104620107 + HAL1-3A_ME LINE L1 1978 2020 -838 4 716 207 125 0 0 chr11 17225512 17225552 -104618304 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 4 716 338 259 130 26 chr11 17226282 17226397 -104617459 + LTR85a LTR Gypsy? 45 171 -531 4 716 582 271 175 41 chr11 17226975 17227341 -104616515 - MTD LTR MaLR 0 419 5 4 716 1189 272 89 46 chr11 17227461 17227917 -104615939 - MTC-int LTR MaLR -98 1160 727 4 716 584 335 121 15 chr11 17227918 17228182 -104615674 - MTB LTR MaLR -48 352 61 4 716 588 182 0 0 chr11 17228225 17228324 -104615532 + B1_Mus2 SINE Alu 49 147 0 4 716 236 268 0 0 chr11 17228324 17228395 -104615461 + A-rich Low_complexity Low_complexity 3 73 0 4 716 378 295 81 0 chr11 17228823 17228972 -104614884 - MLT1F-int LTR MaLR -893 596 436 4 716 267 103 0 0 chr11 17229278 17229317 -104614539 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 716 269 265 54 167 chr11 17229317 17229557 -104614299 - RMER5 LTR ERV1 -29 505 293 4 716 294 253 36 60 chr11 17229644 17229728 -104614128 + MTC LTR MaLR 1 82 -339 4 716 596 291 76 5 chr11 17229734 17229931 -104613925 + Lx6 LINE L1 6937 7147 -313 4 716 795 113 28 28 chr11 17229931 17230076 -104613780 - Lx2 LINE L1 -688 6309 6165 4 716 7911 113 25 12 chr11 17230073 17232020 -104611836 - L1VL2 LINE L1 -1357 2258 284 4 716 667 285 58 41 chr11 17232022 17232366 -104611490 - L1M2 LINE L1 -559 5741 5392 4 716 531 249 54 8 chr11 17232367 17232500 -104611356 - B1_Mur1 SINE Alu -5 144 11 4 716 806 216 107 15 chr11 17232507 17232573 -104611283 + B3 SINE B2 2 84 -132 4 716 297 0 0 0 chr11 17232573 17232606 -104611250 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 716 806 216 107 15 chr11 17232606 17232736 -104611120 + B3 SINE B2 85 216 0 4 716 463 165 0 126 chr11 17232760 17232975 -104610881 - RMER17C LTR ERVK -135 275 88 4 716 267 310 121 21 chr11 17233053 17233343 -104610513 - L1M2 LINE L1 -855 5288 4970 4 716 423 0 0 0 chr11 17234149 17234196 -104609660 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 716 1255 199 188 29 chr11 17234977 17235354 -104608502 - Lx6 LINE L1 0 7460 7024 4 716 576 174 0 65 chr11 17235349 17235444 -104608412 - Lx7 LINE L1 -733 6963 6875 4 716 2260 159 128 0 chr11 17235444 17235835 -104608021 - BGLII_B LTR ERVK 0 441 1 4 716 576 174 0 65 chr11 17235835 17235862 -104607994 - Lx7 LINE L1 -822 6874 6849 4 716 1674 147 28 3 chr11 17235887 17236173 -104607683 + RLTR15 LTR ERVK 1 293 -66 4 716 4403 236 67 93 chr11 17236189 17237119 -104606737 + MYSERV16_I-int LTR ERVK 319 1266 -1060 4 716 1236 126 0 5 chr11 17237119 17237310 -104606546 - B2_Mm2 SINE B2 -5 190 1 4 716 4403 236 67 93 chr11 17237310 17237588 -104606268 + MYSERV16_I-int LTR ERVK 1267 1532 -794 4 716 1142 78 0 0 chr11 17237588 17237730 -104606126 + B1_Mm SINE Alu 1 142 -5 4 716 4403 236 67 93 chr11 17237730 17238376 -104605480 + MYSERV16_I-int LTR ERVK 1533 2125 -201 4 716 5358 32 2 0 chr11 17238376 17239005 -104604851 + L1Md_F2 LINE L1 5951 6580 -2 4 716 4403 236 67 93 chr11 17239005 17239134 -104604722 + MYSERV16_I-int LTR ERVK 2126 2251 -75 4 716 1907 180 8 0 chr11 17239193 17239549 -104604307 + RLTR15 LTR ERVK 1 359 0 4 716 4440 214 63 6 chr11 17239549 17240163 -104603693 - Lx7 LINE L1 -1016 6680 6041 4 716 219 69 0 0 chr11 17240163 17240192 -104603664 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 4 716 4440 173 28 13 chr11 17240192 17240694 -104603162 - Lx7 LINE L1 -1656 6040 5505 4 716 4185 124 22 54 chr11 17241010 17242422 -104601434 + L1VL4 LINE L1 184 1547 -2012 4 716 2889 101 36 4 chr11 17242420 17242886 -104600970 + L1VL4 LINE L1 2118 2598 -961 4 716 7186 74 13 5 chr11 17242884 17244367 -104599489 + L1_Mus1 LINE L1 5077 6567 0 4 716 7948 152 94 83 chr11 17244373 17245782 -104598074 + L1_Mur2 LINE L1 2950 4489 -1388 4 716 226 297 13 92 chr11 17245782 17245934 -104597922 + MLT1E LTR MaLR 219 358 -295 4 716 7948 152 94 83 chr11 17245934 17246385 -104597471 + L1_Mur2 LINE L1 4490 4984 -893 4 716 2265 85 36 14 chr11 17246380 17246737 -104597119 + MusHAL1 LINE L1 2263 2627 -85 4 716 1965 187 20 8 chr11 17246737 17247135 -104596721 - Lx LINE L1 -3 6651 6249 4 716 489 182 0 10 chr11 17247167 17247267 -104596589 - L1_Mur2 LINE L1 -617 5260 5162 4 716 6471 58 40 5 chr11 17247268 17248381 -104595475 - MusHAL1 LINE L1 -1728 1625 477 4 716 387 0 0 0 chr11 17248381 17248424 -104595432 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 716 4778 91 40 7 chr11 17248424 17248872 -104594984 - MusHAL1 LINE L1 -2878 476 8 4 716 233 349 58 11 chr11 17249091 17249178 -104594678 + MIR3 SINE MIR 100 190 -18 4 716 771 50 10 0 chr11 17249293 17249394 -104594462 - B1_Mus2 SINE Alu 0 147 46 4 716 311 156 92 15 chr11 17249337 17249402 -104594454 - RLTR25A LTR ERVK -521 582 513 5 716 302 296 20 10 chr11 17250016 17250115 -104593741 - MTEb LTR MaLR 0 379 280 5 716 495 0 0 0 chr11 17250239 17250294 -104593562 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 716 381 43 0 0 chr11 17250372 17250419 -104593437 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 716 844 193 11 27 chr11 17250726 17250912 -104592944 - RMER10B LTR ERVL 0 398 216 5 716 305 290 116 51 chr11 17250980 17251118 -104592738 + HAL1-3A_ME LINE L1 2292 2438 -420 5 716 852 206 63 82 chr11 17251130 17251399 -104592457 - RMER10B LTR ERVL -134 264 1 5 716 293 173 187 0 chr11 17251626 17251701 -104592155 - MER34A LTR ERV1 -478 93 5 5 716 350 270 161 104 chr11 17252828 17253212 -104590644 - MLT1A1 LTR MaLR 0 408 3 5 716 567 299 66 0 chr11 17253307 17253474 -104590382 - MER3 DNA MER1_type -26 183 6 5 716 425 138 12 0 chr11 17254720 17254800 -104589056 + (CAA)n Simple_repeat Simple_repeat 1 81 0 5 716 1532 224 91 13 chr11 17254815 17255209 -104588647 + Lx5 LINE L1 6622 7046 -4 5 716 533 314 35 74 chr11 17255570 17255800 -104588056 - MER58B DNA MER1_type -5 336 116 5 716 336 299 35 0 chr11 17255893 17255980 -104587876 + Charlie17a DNA MER1_type 9 98 -121 5 716 860 322 129 36 chr11 17256629 17257041 -104586815 + MLT1C LTR MaLR 12 461 -6 5 716 380 206 8 23 chr11 17257052 17257181 -104586675 + (TA)n Simple_repeat Simple_repeat 2 128 0 5 716 966 266 0 0 chr11 17257207 17257421 -104586435 + ID_B1 SINE B4 2 215 -9 5 716 410 263 81 45 chr11 17257437 17257684 -104586172 - L1MB8 LINE L1 0 6178 5923 5 716 267 93 0 0 chr11 17257797 17257840 -104586016 + (CAAAG)n Simple_repeat Simple_repeat 2 44 0 5 716 228 56 28 0 chr11 17257863 17257899 -104585957 - RMER15 LTR ERVL -114 461 425 5 716 227 211 0 55 chr11 17258362 17258417 -104585439 - RMER15 LTR ERVL -166 409 358 5 716 219 299 30 20 chr11 17258533 17258632 -104585224 - PB1D10 SINE Alu 0 117 18 5 716 408 20 0 0 chr11 17259576 17259625 -104584231 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 716 351 0 0 0 chr11 17260234 17260273 -104583583 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 716 432 0 0 0 chr11 17260273 17260320 -104583536 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 716 276 316 79 83 chr11 17260379 17260631 -104583225 + MER31B LTR ERV1 1 251 -215 5 716 594 152 0 54 chr11 17260901 17261012 -104582844 - RLTR11B LTR ERVK -346 107 3 5 716 265 326 22 34 chr11 17261014 17261103 -104582753 - B4A SINE B4 -204 88 1 5 716 21 0 0 0 chr11 17261105 17261126 -104582730 + AT_rich Low_complexity Low_complexity 1 21 0 5 716 1612 129 4 11 chr11 17261920 17262187 -104581669 + RLTR31_Mur LTR ERVK 1 265 -288 5 716 736 257 199 18 chr11 17262201 17262482 -104581374 + MTC LTR MaLR 38 369 -52 5 716 2782 181 73 6 chr11 17262491 17263009 -104580847 + RMER4B LTR ERVK 33 585 0 5 716 637 145 0 0 chr11 17263009 17263134 -104580722 - Lx5 LINE L1 -1291 5767 5643 5 716 679 293 224 65 chr11 17263195 17263451 -104580405 + L1ME1 LINE L1 5498 5798 -381 5 716 467 45 15 0 chr11 17263451 17263517 -104580339 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 716 679 303 77 79 chr11 17263517 17263579 -104580277 + L1ME1 LINE L1 5799 5842 -337 5 716 3766 142 24 19 chr11 17263579 17264203 -104579653 - Lx LINE L1 -5 6649 6023 5 716 679 303 77 79 chr11 17264203 17264300 -104579556 + L1ME1 LINE L1 5843 5944 -235 5 716 279 0 0 0 chr11 17264300 17264331 -104579525 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 716 679 303 77 79 chr11 17264331 17264440 -104579416 + L1ME1 LINE L1 5945 6063 -116 5 716 411 263 211 0 chr11 17264449 17264601 -104579255 + MTD LTR MaLR 236 419 0 5 716 293 231 0 58 chr11 17264601 17264670 -104579186 - Lx8 LINE L1 -146 7327 7263 5 716 1730 244 58 37 chr11 17264690 17265055 -104578801 - L1_Mur3 LINE L1 -1590 4290 3909 5 716 2578 174 24 12 chr11 17265055 17265554 -104578302 - RLTR16 LTR ERVK 0 505 1 5 716 1730 244 58 37 chr11 17265554 17265832 -104578024 - L1_Mur3 LINE L1 -1972 3908 3634 5 716 682 256 26 58 chr11 17266040 17266231 -104577625 - B3A SINE B2 -3 195 11 5 716 840 272 90 0 chr11 17266231 17266621 -104577235 - L1_Mur3 LINE L1 -2419 3461 3037 5 716 293 169 0 0 chr11 17266656 17266715 -104577141 - L1_Mur3 LINE L1 -4294 1586 1528 5 716 462 295 30 44 chr11 17266967 17267102 -104576754 - MTE-int LTR MaLR -1343 237 105 5 716 875 271 13 60 chr11 17267096 17267331 -104576525 - MTE2b LTR MaLR -155 224 1 5 716 4126 140 6 6 chr11 17267476 17268122 -104575734 + Lx2 LINE L1 6347 6992 -5 5 716 312 27 0 0 chr11 17268251 17268288 -104575568 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 716 2611 149 5 5 chr11 17268522 17268939 -104574917 - MTC LTR MaLR 0 421 5 5 716 267 141 47 0 chr11 17269252 17269316 -104574540 + GA-rich Low_complexity Low_complexity 4 70 0 5 716 273 149 0 0 chr11 17269590 17269657 -104574199 + (A)n Simple_repeat Simple_repeat 1 67 0 5 716 252 0 0 0 chr11 17269998 17270026 -104573830 + (T)n Simple_repeat Simple_repeat 1 28 0 5 716 200 274 20 0 chr11 17271353 17271404 -104572452 + CT-rich Low_complexity Low_complexity 3 54 0 5 716 181 244 22 22 chr11 17271521 17271567 -104572289 - MER5A DNA MER1_type -5 184 139 5 716 1181 85 25 55 chr11 17271714 17271914 -104571942 - B2_Mm2 SINE B2 0 195 2 5 716 252 130 0 0 chr11 17273241 17273287 -104570569 + (TAG)n Simple_repeat Simple_repeat 1 46 0 5 716 951 286 55 41 chr11 17273361 17273850 -104570006 - L1MB3 LINE L1 -110 6073 5578 5 716 504 72 0 0 chr11 17273872 17273941 -104569915 + (TCC)n Simple_repeat Simple_repeat 2 70 0 5 716 243 0 0 0 chr11 17274488 17274515 -104569341 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 716 543 31 0 0 chr11 17274515 17274579 -104569277 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 716 727 185 47 11 chr11 17274581 17274756 -104569100 - RMER17C LTR ERVK -257 153 1 5 716 3596 28 28 5 chr11 17274779 17275205 -104568651 + RLTR10C LTR ERVK 1 436 0 5 716 198 143 0 0 chr11 17275227 17275262 -104568594 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 716 375 272 9 55 chr11 17275293 17275402 -104568454 - PB1D10 SINE Alu -11 106 3 5 716 7416 90 4 2 chr11 17275486 17276531 -104567325 + L1_Mus3 LINE L1 5588 6634 -4 5 716 32 0 0 0 chr11 17276531 17276563 -104567293 + AT_rich Low_complexity Low_complexity 1 32 0 5 716 279 0 0 0 chr11 17276842 17276873 -104566983 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 716 432 283 108 0 chr11 17277817 17277983 -104565873 + MER53 DNA hAT 2 185 -8 5 716 525 44 0 0 chr11 17278530 17278598 -104565258 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 716 798 223 77 10 chr11 17280604 17280799 -104563057 - B3 SINE B2 -8 208 1 5 716 2233 151 13 38 chr11 17281244 17281636 -104562220 + ORR1C2 LTR MaLR 3 384 0 5 716 5423 233 45 31 chr11 17281636 17282602 -104561254 + ORR1C2-int LTR MaLR 1 966 -404 5 716 228 67 0 0 chr11 17282602 17282632 -104561224 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 5 716 5423 201 44 48 chr11 17282632 17282985 -104560871 + ORR1C2-int LTR MaLR 967 1319 -51 5 716 341 301 36 50 chr11 17282985 17283125 -104560731 - RLTR14 LTR ERV1 0 382 245 5 716 1207 196 7 18 chr11 17283177 17283398 -104560458 + ORR1C2 LTR MaLR 189 421 0 5 716 511 379 64 4 chr11 17283594 17283830 -104560026 + Charlie10 DNA MER1_type 13 262 -2560 5 716 252 235 0 0 chr11 17284513 17284581 -104559275 + CT-rich Low_complexity Low_complexity 2 69 0 5 716 272 299 23 11 chr11 17285878 17285966 -104557890 + MLT1H2 LTR MaLR 66 154 -335 5 716 529 232 135 11 chr11 17286226 17286394 -104557462 - MTD LTR MaLR -13 406 238 5 716 212 403 0 0 chr11 17288327 17288404 -104555452 + L3b LINE CR1 406 482 0 5 716 394 204 9 9 chr11 17288593 17288707 -104555149 + (TATG)n Simple_repeat Simple_repeat 1 114 0 5 716 752 175 0 6 chr11 17288898 17289059 -104554797 + (TA)n Simple_repeat Simple_repeat 2 161 0 5 716 237 341 109 36 chr11 17289470 17289607 -104554249 - MER63B DNA AcHobo -46 390 244 5 716 570 300 33 114 chr11 17289749 17290020 -104553836 - MLT1B LTR MaLR -3 387 139 5 716 450 0 0 0 chr11 17290521 17290571 -104553285 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 5 716 506 197 0 8 chr11 17292384 17292502 -104551354 + GA-rich Low_complexity Low_complexity 5 121 0 5 716 279 304 138 90 chr11 17293078 17293266 -104550590 - ORR1E LTR MaLR -105 254 58 5 716 337 250 62 0 chr11 17293428 17293524 -104550332 + ORR1D1 LTR MaLR 1 102 -272 5 716 834 175 0 0 chr11 17294792 17294969 -104548887 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 716 312 236 132 28 chr11 17295573 17295717 -104548139 - MER5C DNA MER1_type -12 301 143 5 716 215 73 49 0 chr11 17296257 17296298 -104547558 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 5 716 702 105 0 0 chr11 17296472 17296577 -104547279 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 716 225 0 0 0 chr11 17296728 17296753 -104547103 + (T)n Simple_repeat Simple_repeat 1 25 0 5 716 270 0 0 0 chr11 17297074 17297104 -104546752 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 716 1157 135 0 26 chr11 17297555 17297745 -104546111 - B2_Mm2 SINE B2 -8 187 3 5 716 859 156 0 33 chr11 17298035 17298187 -104545669 + B1_Mur3 SINE Alu 3 149 0 5 716 496 286 179 0 chr11 17298221 17298361 -104545495 - B3A SINE B2 -30 168 4 5 716 215 285 74 30 chr11 17298426 17298538 -104545318 - MIR SINE MIR -107 161 41 5 716 2178 166 5 35 chr11 17300375 17300769 -104543087 - RLTR14 LTR ERV1 0 382 1 5 716 518 160 8 31 chr11 17300828 17300957 -104542899 + CT-rich Low_complexity Low_complexity 2 127 0 5 716 1132 271 96 11 chr11 17300961 17301337 -104542519 - Lx8 LINE L1 -187 7286 6879 5 89 38883 15 2 6 chr11 17301333 17307739 -104536117 - L1Md_A LINE L1 0 6582 206 5 717 793 234 340 18 chr11 17307810 17308198 -104535658 - Lx8 LINE L1 -617 6856 6344 5 717 584 299 14 38 chr11 17308325 17308534 -104535322 - Lx8 LINE L1 -1075 6398 6195 5 717 501 110 0 0 chr11 17308746 17308837 -104535019 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 5 717 281 260 208 23 chr11 17309329 17309459 -104534397 - MER5B DNA MER1_type -4 174 21 5 717 243 88 0 0 chr11 17309951 17309985 -104533871 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 5 717 863 31 16 16 chr11 17309986 17310115 -104533741 + (TCTA)n Simple_repeat Simple_repeat 1 129 0 5 717 462 311 126 49 chr11 17310129 17310376 -104533480 - MER47B DNA MER2_type -152 266 1 6 717 372 296 88 4 chr11 17310411 17310552 -104533304 + MLT1A1 LTR MaLR 202 380 -28 6 717 421 262 29 10 chr11 17310618 17310722 -104533134 + PB1D10 SINE Alu 6 111 -6 6 717 932 87 0 0 chr11 17310849 17310987 -104532869 + L1_Mus2 LINE L1 6429 6566 0 6 717 336 368 39 19 chr11 17311018 17311173 -104532683 - L1M5 LINE L1 -1278 4868 4711 6 717 237 65 0 0 chr11 17311489 17311520 -104532336 + (T)n Simple_repeat Simple_repeat 1 31 0 6 717 1217 203 0 5 chr11 17314155 17314368 -104529488 + B3 SINE B2 2 213 -3 6 717 729 214 0 0 chr11 17314930 17315098 -104528758 + (CAGAGA)n Simple_repeat Simple_repeat 6 173 0 6 717 764 146 0 6 chr11 17315098 17315277 -104528579 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 717 834 186 84 39 chr11 17315919 17316098 -104527758 - MTC LTR MaLR -234 187 1 6 717 294 98 0 0 chr11 17316154 17316205 -104527651 + (T)n Simple_repeat Simple_repeat 1 51 0 6 717 180 0 0 0 chr11 17316336 17316356 -104527500 + (CAG)n Simple_repeat Simple_repeat 1 20 0 6 717 235 312 32 21 chr11 17316642 17316737 -104527119 + MER5A DNA MER1_type 56 160 -29 6 717 213 39 0 0 chr11 17316737 17316763 -104527093 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 717 525 316 11 50 chr11 17316930 17317110 -104526746 + RMER30 DNA MER1_type 9 181 -21 6 717 627 273 12 0 chr11 17317666 17317827 -104526029 - RSINE1 SINE B4 -1 164 2 6 717 216 0 0 0 chr11 17319184 17319208 -104524648 + (T)n Simple_repeat Simple_repeat 1 24 0 6 717 225 0 0 0 chr11 17319208 17319233 -104524623 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 717 230 106 21 0 chr11 17319252 17319299 -104524557 + (TTTTTG)n Simple_repeat Simple_repeat 5 52 0 6 717 1068 62 7 0 chr11 17319301 17319447 -104524409 - L1Md_T LINE L1 0 6582 6436 6 717 223 266 16 0 chr11 17319714 17319778 -104524078 + GA-rich Low_complexity Low_complexity 4 68 0 6 717 409 52 11 3 chr11 17320443 17320502 -104523354 + B1_Mur4 SINE Alu 57 140 -10 6 717 240 35 0 0 chr11 17320502 17320531 -104523325 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 717 4226 162 49 10 chr11 17320755 17321528 -104522328 + RLTR25B LTR ERVK 1 803 -225 6 717 759 22 0 0 chr11 17321721 17321810 -104522046 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 6 717 937 182 146 41 chr11 17321834 17322080 -104521776 + RLTR25B LTR ERVK 757 1028 0 6 717 228 35 0 0 chr11 17322454 17322483 -104521373 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 6 717 361 275 178 4 chr11 17325418 17325659 -104518197 + L1M4 LINE L1 2537 2819 -3327 6 717 12029 90 20 69 chr11 17325766 17326707 -104517149 - L1VL2 LINE L1 -627 2988 2042 6 717 377 120 161 9 chr11 17326707 17326815 -104517041 - B2_Mm2 SINE B2 -7 188 47 6 717 12029 90 20 69 chr11 17326815 17326828 -104517028 - L1VL2 LINE L1 -627 2041 2027 6 717 1146 131 11 6 chr11 17326828 17327005 -104516851 - B2_Mm1t SINE B2 -14 179 2 6 717 12029 90 26 44 chr11 17327005 17328737 -104515119 - L1VL2 LINE L1 -1589 2026 284 6 717 180 0 0 0 chr11 17328835 17328855 -104515001 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 717 451 234 70 11 chr11 17329534 17329672 -104514184 - MIRc SINE MIR -65 203 59 6 717 596 102 0 10 chr11 17329987 17330086 -104513770 + (GA)n Simple_repeat Simple_repeat 1 98 0 6 717 266 182 55 0 chr11 17330546 17330601 -104513255 + B3A SINE B2 1 58 -140 6 717 293 315 65 0 chr11 17330663 17330771 -104513085 + B3A SINE B2 81 195 -3 6 717 30229 83 4 16 chr11 17330771 17337005 -104506851 - L1_Mus1 LINE L1 -2 6565 410 6 717 522 0 0 0 chr11 17337917 17337975 -104505881 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 717 381 195 32 65 chr11 17337976 17338069 -104505787 - B4A SINE B4 -32 260 171 6 717 441 0 0 0 chr11 17338127 17338176 -104505680 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 717 26 64 0 0 chr11 17338444 17338491 -104505365 + AT_rich Low_complexity Low_complexity 1 47 0 6 717 519 17 0 0 chr11 17338498 17338558 -104505298 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 717 502 328 53 0 chr11 17338561 17338692 -104505164 - RSINE1 SINE B4 -20 145 8 6 717 185 0 40 0 chr11 17339714 17339739 -104504117 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 717 411 311 43 32 chr11 17341372 17341558 -104502298 - MER53 DNA hAT -5 188 1 6 717 612 0 0 0 chr11 17343099 17343167 -104500689 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 717 935 194 0 72 chr11 17343646 17343840 -104500016 + URR1A DNA MER1_type 1 180 -46 6 717 406 291 73 42 chr11 17344037 17344202 -104499654 + RMER20B LTR ERVK 234 403 -224 6 717 348 151 0 0 chr11 17344634 17344687 -104499169 + URR1A DNA MER1_type 173 225 -1 6 717 483 284 69 0 chr11 17344799 17344955 -104498901 + ORR1D2 LTR MaLR 1 174 -185 6 717 183 42 0 0 chr11 17344955 17344979 -104498877 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 717 189 0 0 0 chr11 17345367 17345388 -104498468 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 6 717 503 290 74 30 chr11 17345531 17345762 -104498094 + ORR1E LTR MaLR 8 248 -111 6 717 495 275 56 14 chr11 17345823 17345967 -104497889 + B3 SINE B2 67 216 0 6 717 319 299 7 10 chr11 17346003 17346099 -104497757 + ORR1E LTR MaLR 257 361 -18 6 717 264 348 11 0 chr11 17346143 17346232 -104497624 - MER58B DNA MER1_type -14 327 238 6 717 236 100 25 0 chr11 17347329 17347369 -104496487 + (GAAA)n Simple_repeat Simple_repeat 1 41 0 6 717 449 289 60 78 chr11 17347614 17348041 -104495815 + L1_Mur3 LINE L1 1205 1635 -4212 6 717 401 272 0 37 chr11 17348129 17348236 -104495620 + MLT1A0 LTR MaLR 26 128 -237 6 717 183 282 108 86 chr11 17351030 17351123 -104492733 - L2 LINE L2 -3319 100 6 6 717 202 378 0 39 chr11 17351261 17351338 -104492518 + L2b LINE L2 3296 3369 -6 6 717 849 254 84 4 chr11 17351842 17352091 -104491765 + RMER5 LTR ERV1 48 316 -218 6 717 226 246 108 14 chr11 17352094 17352168 -104491688 + RMER5 LTR ERV1 454 534 0 6 717 345 331 8 23 chr11 17352608 17352741 -104491115 - Lx8 LINE L1 -128 7345 7215 6 717 742 244 59 13 chr11 17352776 17353013 -104490843 - RMER5 LTR ERV1 0 534 287 6 717 312 70 0 0 chr11 17353015 17353058 -104490798 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 717 421 184 22 33 chr11 17353058 17353148 -104490708 - RMER5 LTR ERV1 -413 121 33 6 717 396 340 12 44 chr11 17353290 17353450 -104490406 - MIR3 SINE MIR -52 156 2 6 717 609 254 8 0 chr11 17354388 17354514 -104489342 + PB1 SINE Alu 1 127 0 6 717 197 333 115 18 chr11 17354740 17354853 -104489003 + MIRb SINE MIR 30 153 -115 6 717 1643 91 27 5 chr11 17355748 17355968 -104487888 - L1_Mus2 LINE L1 -6 6560 6336 6 717 282 222 14 14 chr11 17358848 17358921 -104484935 + GA-rich Low_complexity Low_complexity 1 73 0 6 717 278 217 159 0 chr11 17359449 17359518 -104484338 + ID4 SINE ID 3 82 -1 6 717 289 164 121 60 chr11 17359605 17359754 -104484102 - MER33 DNA MER1_type -12 312 155 6 717 225 0 0 0 chr11 17360722 17360747 -104483109 + (T)n Simple_repeat Simple_repeat 1 25 0 6 717 234 0 0 0 chr11 17360839 17360865 -104482991 + (T)n Simple_repeat Simple_repeat 1 26 0 6 717 21 95 0 0 chr11 17361556 17361619 -104482237 + AT_rich Low_complexity Low_complexity 1 63 0 6 717 440 106 0 12 chr11 17362608 17362694 -104481162 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 717 2402 185 26 32 chr11 17363253 17363751 -104480105 - RLTR16 LTR ERVK -6 499 5 6 717 292 211 0 36 chr11 17365448 17365705 -104478151 + (CCA)n Simple_repeat Simple_repeat 1 247 0 6 717 219 255 0 0 chr11 17365742 17365891 -104477965 + (CCA)n Simple_repeat Simple_repeat 1 149 0 6 717 240 245 0 0 chr11 17365928 17366071 -104477785 + (CCA)n Simple_repeat Simple_repeat 1 143 0 6 717 316 390 0 30 chr11 17366087 17366251 -104477605 + HAL1-2a_MD LINE L1 2347 2505 -519 6 717 459 229 0 0 chr11 17366258 17366576 -104477280 + (CCA)n Simple_repeat Simple_repeat 1 318 0 6 717 399 230 0 0 chr11 17366594 17366897 -104476959 + (CCA)n Simple_repeat Simple_repeat 1 303 0 6 717 656 336 49 33 chr11 17366963 17367391 -104476465 - Lx8 LINE L1 -3 7470 7036 6 717 298 320 14 79 chr11 17367401 17367540 -104476316 - MT2A LTR ERVL -270 263 134 6 717 1324 211 96 60 chr11 17367786 17368118 -104475738 + ORR1E LTR MaLR 5 348 -11 6 717 198 269 90 0 chr11 17368326 17368393 -104475463 + MIRb SINE MIR 25 97 -171 6 717 287 276 190 0 chr11 17368902 17369018 -104474838 + MLT1H-int LTR MaLR 869 1006 -403 6 717 1150 234 87 59 chr11 17369133 17369537 -104474319 + MTD LTR MaLR 1 415 -4 6 717 27074 157 12 12 chr11 17369547 17374756 -104469100 + L1_Mus3 LINE L1 560 5721 -162 6 717 7841 90 7 8 chr11 17374756 17375778 -104468078 - RLTR13D2 LTR ERVK -2 1021 1 6 717 27074 108 11 9 chr11 17375778 17376688 -104467168 + L1_Mus3 LINE L1 5722 6638 0 6 717 233 356 56 69 chr11 17376738 17376898 -104466958 + MLT1H-int LTR MaLR 1255 1412 -77 6 717 3139 104 116 4 chr11 17376900 17377364 -104466492 + L1_Mus4 LINE L1 6121 6636 0 6 717 1108 280 44 60 chr11 17377981 17378611 -104465245 + Charlie1a DNA MER1_type 774 1393 -62 6 717 661 210 34 0 chr11 17379374 17379493 -104464363 - B3A SINE B2 -73 125 3 6 717 192 77 0 0 chr11 17379493 17379519 -104464337 + (TTC)n Simple_repeat Simple_repeat 2 27 0 6 717 236 140 40 0 chr11 17379708 17379758 -104464098 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 6 717 21 36 0 0 chr11 17379876 17379904 -104463952 + AT_rich Low_complexity Low_complexity 1 28 0 6 717 238 213 134 42 chr11 17379910 17380052 -104463804 + Lx9 LINE L1 7463 7617 -27 6 717 890 252 147 37 chr11 17380209 17380535 -104463321 + MTEb LTR MaLR 1 362 -17 6 717 319 197 301 8 chr11 17380686 17380809 -104463047 + MLT1A LTR MaLR 216 374 0 6 717 405 0 0 0 chr11 17381311 17381356 -104462500 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 717 425 260 40 10 chr11 17381957 17382058 -104461798 - RSINE1 SINE B4 -17 148 45 6 717 198 288 105 9 chr11 17382106 17382211 -104461645 + MIR3 SINE MIR 64 178 -30 6 717 297 302 46 19 chr11 17382941 17383049 -104460807 + RLTR16 LTR ERVK 34 144 -361 6 717 303 263 26 0 chr11 17383648 17383724 -104460132 + MTE2a LTR MaLR 1 78 -301 6 717 500 233 205 18 chr11 17383725 17383891 -104459965 + MTE2a LTR MaLR 183 379 0 6 717 377 229 129 100 chr11 17384088 17384258 -104459598 - MTE-int LTR MaLR -114 1466 1292 6 717 437 290 90 70 chr11 17384310 17384532 -104459324 - L1MEf LINE L1 -640 5712 5479 7 717 932 177 46 51 chr11 17384532 17384728 -104459128 + B2_Mm2 SINE B2 1 195 0 7 717 379 290 90 70 chr11 17384728 17384761 -104459095 - L1MEf LINE L1 -874 5478 5452 7 717 23 0 0 0 chr11 17384919 17384942 -104458914 + AT_rich Low_complexity Low_complexity 1 23 0 7 717 258 311 157 34 chr11 17385034 17385124 -104458732 - L1MEf LINE L1 -1193 5126 5015 7 717 1345 184 191 31 chr11 17385124 17385443 -104458413 - ORR1D1 LTR MaLR 0 374 5 7 717 315 311 157 34 chr11 17385443 17385759 -104458097 - L1MEf LINE L1 -1305 5014 4670 7 717 36 40 0 0 chr11 17385958 17386008 -104457848 + AT_rich Low_complexity Low_complexity 1 50 0 7 717 393 202 28 27 chr11 17386193 17386898 -104456958 + CT-rich Low_complexity Low_complexity 1 705 0 7 717 250 325 71 47 chr11 17386899 17387154 -104456702 - L1MEf LINE L1 -4531 1884 1624 7 717 378 143 0 0 chr11 17387394 17387457 -104456399 + (CCA)n Simple_repeat Simple_repeat 2 64 0 7 717 3430 43 2 15 chr11 17387721 17388122 -104455734 + MTA_Mm LTR MaLR 1 396 0 7 717 250 285 109 20 chr11 17388320 17388567 -104455289 - L1MEf LINE L1 -5001 1399 1131 7 717 482 46 15 0 chr11 17388615 17388680 -104455176 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 7 717 366 23 0 0 chr11 17388757 17388800 -104455056 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 717 619 325 51 12 chr11 17388812 17389067 -104454789 - B4A SINE B4 -18 274 10 7 717 501 115 0 0 chr11 17389855 17389933 -104453923 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 717 2040 239 36 0 chr11 17389958 17390402 -104453454 + Lx7 LINE L1 6889 7348 -348 7 717 341 246 0 0 chr11 17390406 17390467 -104453389 + B3 SINE B2 2 62 -154 7 717 566 122 10 0 chr11 17390467 17390565 -104453291 + (TC)n Simple_repeat Simple_repeat 2 100 0 7 717 325 245 92 0 chr11 17390660 17390758 -104453098 + Lx7 LINE L1 7567 7673 -23 7 717 1123 183 35 0 chr11 17390801 17391003 -104452853 - B3 SINE B2 0 216 8 7 717 2197 152 39 6 chr11 17392237 17392601 -104451255 - RMER6B LTR ERVK -85 376 1 7 717 662 291 53 43 chr11 17393614 17393937 -104449919 - L1ME4a LINE L1 -222 5902 5577 7 717 267 54 0 0 chr11 17395877 17395914 -104447942 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 717 39 38 0 0 chr11 17396688 17396741 -104447115 + AT_rich Low_complexity Low_complexity 1 53 0 7 717 580 286 173 48 chr11 17396748 17397060 -104446796 + Lx9 LINE L1 7065 7415 -229 7 717 198 0 0 0 chr11 17397093 17397115 -104446741 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 717 197 143 0 45 chr11 17397451 17397495 -104446361 + GA-rich Low_complexity Low_complexity 3 44 0 7 717 1092 184 91 5 chr11 17397676 17397884 -104445972 + URR1A DNA MER1_type 1 226 0 7 717 274 196 0 51 chr11 17397885 17397944 -104445912 - MER5A DNA MER1_type -75 114 59 7 717 594 28 0 0 chr11 17397949 17398021 -104445835 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 717 327 85 0 0 chr11 17398134 17398181 -104445675 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 717 635 117 0 18 chr11 17400864 17400977 -104442879 + (TCCC)n Simple_repeat Simple_repeat 3 113 0 7 717 426 20 0 0 chr11 17400977 17401028 -104442828 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 717 204 97 0 0 chr11 17401331 17401362 -104442494 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 717 5413 66 0 8 chr11 17403125 17403783 -104440073 + L1Md_F2 LINE L1 5930 6582 0 7 717 926 235 57 24 chr11 17404670 17404966 -104438890 + Charlie12 DNA MER1_type 1611 1916 -957 7 717 672 229 168 0 chr11 17405064 17405243 -104438613 + B3 SINE B2 2 210 -6 7 717 309 117 0 0 chr11 17405243 17405303 -104438553 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 7 717 2298 279 94 57 chr11 17405470 17406420 -104437436 + Charlie12 DNA MER1_type 1889 2873 0 7 717 195 277 188 0 chr11 17406501 17406613 -104437243 - MIR SINE MIR -123 139 7 7 717 34169 67 3 19 chr11 17406655 17411809 -104432047 + L1Md_F LINE L1 631 5677 -206 7 717 38810 31 0 1 chr11 17411809 17418402 -104425454 - L1Md_T LINE L1 0 6585 1 7 717 7143 57 14 0 chr11 17418395 17419273 -104424583 + L1Md_F2 LINE L1 5672 6561 -21 7 717 282 116 0 0 chr11 17419273 17419316 -104424540 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 717 2005 209 93 69 chr11 17419463 17420043 -104423813 + RMER19B LTR ERVK 309 902 0 7 717 294 224 0 73 chr11 17420493 17420575 -104423281 - Charlie12 DNA MER1_type -465 2408 2333 7 717 313 281 96 70 chr11 17421145 17421302 -104422554 - B4A SINE B4 -131 161 1 7 717 1177 62 21 0 chr11 17421391 17421535 -104422321 + B1_Mm SINE Alu 1 147 0 7 717 414 0 0 0 chr11 17421535 17421581 -104422275 + (CAAAAA)n Simple_repeat Simple_repeat 6 51 0 7 717 302 286 93 19 chr11 17421779 17421886 -104421970 + PB1D10 SINE Alu 3 117 0 7 717 2833 160 19 0 chr11 17423713 17424200 -104419656 + RLTR28 LTR ERVL 2 497 -27 7 717 227 276 91 45 chr11 17425595 17425705 -104418151 + MLT1J LTR MaLR 1 115 -495 7 717 550 311 60 30 chr11 17425788 17426023 -104417833 + MLT1J LTR MaLR 225 466 -46 7 717 230 297 21 42 chr11 17427596 17427691 -104416165 - ID_B1 SINE B4 -3 221 129 7 717 949 183 112 0 chr11 17427985 17428182 -104415674 - RLTR14 LTR ERV1 -157 225 7 7 717 745 204 59 30 chr11 17428205 17428407 -104415449 + RCHARR1 DNA MER1_type 428 635 -339 7 717 367 318 61 0 chr11 17428453 17428585 -104415271 - B1F2 SINE Alu -9 140 1 7 717 247 255 191 46 chr11 17429297 17429449 -104414407 + MIR3 SINE MIR 8 181 -27 7 717 243 125 0 0 chr11 17429975 17430015 -104413841 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 717 543 276 14 7 chr11 17430664 17430810 -104413046 - MTEa LTR MaLR 0 379 233 7 717 720 208 222 27 chr11 17430811 17431159 -104412697 + MTD LTR MaLR 1 405 -2 7 717 386 164 15 0 chr11 17431116 17431183 -104412673 - MTB LTR MaLR -2 398 331 7 717 533 105 12 0 chr11 17431247 17431333 -104412523 + (TG)n Simple_repeat Simple_repeat 1 87 0 7 717 1199 146 20 5 chr11 17432346 17432546 -104411310 - Lx LINE L1 0 6654 6452 7 89 2548 61 6 31 chr11 17432546 17432900 -104410956 - MTB LTR MaLR -55 345 1 7 718 580 309 89 40 chr11 17432907 17433109 -104410747 - MTE2b LTR MaLR -115 264 53 7 718 252 0 0 0 chr11 17433171 17433199 -104410657 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 718 375 41 0 0 chr11 17433199 17433248 -104410608 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 718 588 312 17 6 chr11 17433313 17433487 -104410369 - B4 SINE B4 -115 177 2 7 718 3092 293 69 24 chr11 17433487 17433641 -104410215 - MTE-int LTR MaLR -25 1555 1402 7 718 234 0 0 0 chr11 17433641 17433667 -104410189 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 718 3092 293 69 24 chr11 17433667 17434425 -104409431 - MTE-int LTR MaLR -179 1401 601 7 718 659 246 7 40 chr11 17434424 17434576 -104409280 - MTD LTR MaLR -272 147 1 7 718 1395 254 24 24 chr11 17434576 17434915 -104408941 - MTE2b LTR MaLR -40 339 1 7 718 415 260 0 29 chr11 17435014 17435117 -104408739 + ORR1E LTR MaLR 11 110 -249 7 718 2340 161 89 0 chr11 17436100 17436516 -104407340 - L1_Mm LINE L1 -334 5549 5097 7 718 6178 61 24 0 chr11 17436532 17437314 -104406542 + L1_Mus4 LINE L1 5589 6389 -247 7 718 186 282 128 0 chr11 17437413 17437491 -104406365 + L2c LINE L2 3287 3374 -13 7 718 761 303 97 37 chr11 17438696 17438994 -104404862 - MTEa LTR MaLR -58 321 6 7 718 1712 189 206 94 chr11 17439724 17440274 -104403582 + RMER19C LTR ERVK 1 611 0 7 718 4244 172 0 22 chr11 17440409 17441170 -104402686 - Lx2 LINE L1 -755 5128 4385 7 718 6083 126 31 2 chr11 17441167 17442485 -104401371 + Lx2 LINE L1 5142 6506 -491 7 718 2826 92 18 3 chr11 17442485 17442866 -104400990 + Lx LINE L1 6261 6647 -7 7 718 255 279 40 99 chr11 17444092 17444159 -104399697 - MTD LTR MaLR 0 419 353 7 718 201 39 0 0 chr11 17444159 17444185 -104399671 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 718 255 279 40 99 chr11 17444185 17444268 -104399588 - MTD LTR MaLR -67 352 278 7 718 289 311 97 0 chr11 17444280 17444383 -104399473 - MTD LTR MaLR -195 224 112 7 718 417 268 0 61 chr11 17444437 17444568 -104399288 + PB1 SINE Alu 1 123 -4 7 718 1772 210 19 61 chr11 17445398 17445808 -104398048 + RMER10B LTR ERVL 6 398 0 7 718 24 0 0 0 chr11 17446225 17446249 -104397607 + AT_rich Low_complexity Low_complexity 1 24 0 7 718 859 155 1 41 chr11 17447173 17447322 -104396534 + B3A SINE B2 1 142 -56 7 718 357 24 0 0 chr11 17447322 17447364 -104396492 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 718 562 232 76 102 chr11 17447364 17447411 -104396445 + B2_Mm2 SINE B2 131 192 -3 7 718 575 308 0 0 chr11 17447632 17447765 -104396091 - ID_B1 SINE B4 -7 217 85 7 718 1127 89 0 0 chr11 17447938 17448084 -104395772 + B1_Mm SINE Alu 2 147 0 7 718 189 0 0 0 chr11 17448086 17448107 -104395749 + (A)n Simple_repeat Simple_repeat 1 21 0 7 718 1003 209 82 56 chr11 17448288 17448521 -104395335 + 7SK RNA RNA 1 239 -92 7 718 443 213 7 0 chr11 17449718 17449854 -104394002 + (CA)n Simple_repeat Simple_repeat 2 138 0 7 718 300 200 0 0 chr11 17449886 17449966 -104393890 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 718 330 291 0 0 chr11 17450002 17450174 -104393682 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 718 273 314 0 0 chr11 17450270 17450633 -104393223 + (CA)n Simple_repeat Simple_repeat 1 363 0 7 718 339 252 0 0 chr11 17450654 17450765 -104393091 + (CA)n Simple_repeat Simple_repeat 2 112 0 7 718 183 267 0 0 chr11 17450795 17450881 -104392975 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 718 225 180 0 0 chr11 17451335 17451385 -104392471 + (CCA)n Simple_repeat Simple_repeat 3 52 0 7 718 338 307 79 21 chr11 17451474 17451614 -104392242 - MLT1A0 LTR MaLR -74 291 144 7 718 1447 215 97 36 chr11 17451663 17452054 -104391802 - MTD LTR MaLR -2 417 3 7 718 288 170 0 0 chr11 17452091 17452144 -104391712 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 718 280 344 15 15 chr11 17452155 17452288 -104391568 + (TATG)n Simple_repeat Simple_repeat 2 134 0 7 718 1075 322 69 11 chr11 17452516 17453297 -104390559 - L1MA4 LINE L1 -1548 5925 5056 7 718 290 280 0 17 chr11 17453793 17453913 -104389943 + (TATG)n Simple_repeat Simple_repeat 2 119 0 7 718 281 271 44 125 chr11 17453998 17454136 -104389720 + L2a LINE L2 3268 3398 -28 7 718 1282 262 35 24 chr11 17454136 17454508 -104389348 - MTE2a LTR MaLR -3 376 1 7 718 281 271 44 125 chr11 17454508 17454529 -104389327 + L2a LINE L2 3399 3414 -12 7 718 454 233 67 8 chr11 17454738 17454872 -104388984 - B1F SINE Alu -7 142 1 7 718 270 0 0 0 chr11 17454963 17454993 -104388863 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 718 285 100 0 91 chr11 17456797 17456852 -104387004 - MT2A LTR ERVL 0 584 535 7 718 324 70 0 0 chr11 17456852 17456895 -104386961 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 718 245 98 24 0 chr11 17456895 17456936 -104386920 + (CATA)n Simple_repeat Simple_repeat 1 42 0 7 718 674 215 164 148 chr11 17456945 17457355 -104386501 - MT2A LTR ERVL -105 479 1 7 718 7696 98 18 17 chr11 17458097 17460224 -104383632 + L1VL4 LINE L1 1 2123 -1436 8 718 2893 48 25 3 chr11 17460224 17460581 -104383275 - RLTR10B2 LTR ERVK 0 365 1 8 718 3978 115 14 1 chr11 17460581 17461263 -104382593 - IAPEY3-int LTR ERVK 0 7680 6965 8 718 1399 108 99 4 chr11 17461263 17461495 -104382361 - IAP-d-int LTR ERVK -1287 5255 5002 8 718 415 298 33 33 chr11 17461507 17461785 -104382071 - IAPEY3-int LTR ERVK -5481 1061 822 8 718 2796 32 0 3 chr11 17461925 17462267 -104381589 - RLTR10-int LTR ERVK -995 992 652 8 718 315 111 0 0 chr11 17462270 17462315 -104381541 - RLTR10-int LTR ERVK -6405 137 93 8 718 429 99 48 29 chr11 17462315 17462419 -104381437 + CT-rich Low_complexity Low_complexity 4 109 0 8 718 226 254 0 17 chr11 17462424 17462484 -104381372 + T-rich Low_complexity Low_complexity 2 60 0 8 718 1315 67 0 6 chr11 17462534 17462713 -104381143 - RLTR10-int LTR ERVK -7403 178 1 8 718 2768 58 0 118 chr11 17462713 17463127 -104380729 - RLTR10B2 LTR ERVK 0 365 1 8 718 17102 168 14 12 chr11 17463127 17464517 -104379339 + Lx LINE L1 2478 3850 -2036 8 718 196 28 26 53 chr11 17464517 17464555 -104379301 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 718 17102 162 26 9 chr11 17464555 17467289 -104376567 + Lx LINE L1 3851 6647 -7 8 718 1359 45 0 0 chr11 17467291 17467491 -104376365 + (TCTA)n Simple_repeat Simple_repeat 1 200 0 8 718 1142 14 65 0 chr11 17467642 17467780 -104376076 + B1_Mm SINE Alu 1 147 0 8 718 186 128 0 0 chr11 17467781 17467820 -104376036 + (A)n Simple_repeat Simple_repeat 1 39 0 8 718 190 394 20 114 chr11 17468090 17468239 -104375617 + L2 LINE L2 60 194 -3225 8 718 27 0 0 0 chr11 17468560 17468587 -104375269 + AT_rich Low_complexity Low_complexity 1 27 0 8 718 2499 200 66 10 chr11 17469216 17469674 -104374182 + RLTR20B3 LTR ERVK 1 469 -108 8 718 491 0 17 0 chr11 17469674 17469733 -104374123 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 718 564 15 0 0 chr11 17469733 17469797 -104374059 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 718 2499 200 66 10 chr11 17469797 17469853 -104374003 + RLTR20B3 LTR ERVK 470 542 -35 8 718 1694 118 0 47 chr11 17469921 17470197 -104373659 + Lx LINE L1 6391 6653 -1 8 718 1011 190 28 9 chr11 17471047 17471260 -104372596 + MYSERV16_I-int LTR ERVK 49 265 -2061 8 718 3417 106 4 0 chr11 17471260 17471771 -104372085 + L1_Mus3 LINE L1 5181 5693 -190 8 718 5617 103 16 2 chr11 17471772 17472577 -104371279 + L1_Mus3 LINE L1 5819 6634 -4 8 718 1894 161 61 24 chr11 17472577 17473003 -104370853 + MYSERV16_I-int LTR ERVK 255 696 -1630 8 718 2725 156 68 8 chr11 17473035 17474096 -104369760 + MYSERV16_I-int LTR ERVK 1127 2251 -75 8 718 2530 182 79 24 chr11 17474159 17474604 -104369252 + RLTR20B3 LTR ERVK 4 473 -104 8 718 531 0 0 0 chr11 17474604 17474663 -104369193 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 718 243 0 0 0 chr11 17474663 17474689 -104369167 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 718 2530 182 79 24 chr11 17474689 17474776 -104369080 + RLTR20B3 LTR ERVK 474 565 -12 8 718 673 307 83 3 chr11 17474786 17475032 -104368824 + MTE2a LTR MaLR 111 370 -9 8 718 243 218 0 0 chr11 17475399 17475454 -104368402 + (TTA)n Simple_repeat Simple_repeat 3 57 0 8 718 276 77 0 0 chr11 17475658 17475697 -104368159 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 718 1175 271 69 9 chr11 17477190 17477525 -104366331 + MTE2b-int LTR MaLR 1226 1580 0 8 718 260 224 0 0 chr11 17477525 17477566 -104366290 + MTE2b LTR MaLR 16 56 -323 8 718 418 315 46 0 chr11 17477692 17477822 -104366034 - ID_B1 SINE B4 -2 222 87 8 718 1764 112 214 3 chr11 17478312 17478653 -104365203 + L1_Mm LINE L1 5053 5465 -418 8 718 35131 33 3 11 chr11 17478650 17483889 -104359967 + L1Md_A LINE L1 401 5586 -297 8 718 8846 14 0 0 chr11 17483889 17484885 -104358971 + L1Md_A LINE L1 5587 6582 0 8 718 10811 94 2 76 chr11 17484891 17486321 -104357535 + L1_Mus1 LINE L1 4159 5582 -301 8 718 6904 101 12 3 chr11 17486321 17487307 -104356549 + L1Md_F2 LINE L1 5588 6582 0 8 718 10811 79 0 9 chr11 17487307 17488423 -104355433 + L1_Mus1 LINE L1 5583 6567 0 8 718 402 162 0 0 chr11 17489077 17489151 -104354705 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 718 246 174 0 0 chr11 17489155 17489201 -104354655 + (TATG)n Simple_repeat Simple_repeat 3 48 0 8 718 736 323 39 11 chr11 17489384 17489669 -104354187 + Lx8 LINE L1 6415 6707 -766 8 718 2098 72 10 3 chr11 17489927 17490219 -104353637 - L1_Mus3 LINE L1 -5 6633 6340 8 718 248 128 0 0 chr11 17490219 17490258 -104353598 + L1_Mus3 LINE L1 6299 6337 -301 8 718 656 317 111 62 chr11 17490248 17490782 -104353074 + Lx8 LINE L1 6742 7301 -172 8 718 225 0 0 0 chr11 17490811 17490836 -104353020 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 718 375 304 132 6 chr11 17491115 17491274 -104352582 + MLT1B LTR MaLR 212 390 0 8 718 414 0 0 0 chr11 17492062 17492108 -104351748 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 718 342 100 0 0 chr11 17492789 17492849 -104351007 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 718 621 166 79 7 chr11 17493222 17493362 -104350494 - Lx7 LINE L1 -18 7678 7529 8 718 429 169 0 0 chr11 17493365 17493448 -104350408 + (CATAA)n Simple_repeat Simple_repeat 1 83 0 8 718 1080 230 15 114 chr11 17493448 17493860 -104349996 - Lx7 LINE L1 -156 7540 7170 8 718 1164 213 22 18 chr11 17493858 17494135 -104349721 - Lx7 LINE L1 -769 6927 6650 8 718 1113 147 0 52 chr11 17494148 17494269 -104349587 - L1_Mur3 LINE L1 -2325 3555 3445 8 718 969 131 172 5 chr11 17494269 17494461 -104349395 + URR1B DNA MER1_type 1 224 -1 8 718 1113 147 0 52 chr11 17494461 17494568 -104349288 - L1_Mur3 LINE L1 -2436 3444 3339 8 718 5456 155 19 2 chr11 17494778 17495716 -104348140 + Lx LINE L1 5692 6645 -9 8 718 237 65 0 0 chr11 17495716 17495747 -104348109 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 718 358 324 0 28 chr11 17495770 17495878 -104347978 - PB1D10 SINE Alu 0 117 13 8 718 591 15 0 0 chr11 17496705 17496773 -104347083 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 718 260 316 37 25 chr11 17496789 17496870 -104346986 - B4A SINE B4 -15 277 196 8 718 223 325 94 41 chr11 17497047 17497217 -104346639 - L2a LINE L2 -22 3404 3226 8 718 198 345 131 10 chr11 17497440 17497639 -104346217 - L2a LINE L2 -1739 1680 1458 8 718 275 359 81 22 chr11 17497866 17498051 -104345805 + LTR33 LTR ERVL 71 266 -249 8 718 1805 124 80 31 chr11 17498083 17498131 -104345725 - RLTR15 LTR ERVK 0 359 299 8 718 2994 66 10 10 chr11 17498131 17498531 -104345325 + MTB LTR MaLR 1 400 0 8 718 1805 124 80 31 chr11 17498531 17498806 -104345050 - RLTR15 LTR ERVK -61 298 20 8 718 209 353 112 12 chr11 17499062 17499231 -104344625 - L2a LINE L2 -2288 1131 946 8 718 241 375 12 50 chr11 17499265 17499425 -104344431 - MER5A DNA MER1_type -20 169 16 8 718 378 276 0 22 chr11 17500705 17500794 -104343062 + MIR3 SINE MIR 83 169 -39 1 718 322 281 0 45 chr11 17500999 17501111 -104342745 - ID4 SINE ID -47 105 5 2 718 261 211 0 0 chr11 17501592 17501649 -104342207 + T-rich Low_complexity Low_complexity 1 57 0 3 718 363 44 0 0 chr11 17501723 17501768 -104342088 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 4 718 457 97 11 21 chr11 17502754 17502849 -104341007 + (TTTTTG)n Simple_repeat Simple_repeat 1 94 0 5 718 1092 89 7 0 chr11 17502850 17502996 -104340860 - B1_Mus1 SINE Alu 0 148 2 6 718 434 18 18 0 chr11 17504067 17504122 -104339734 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 718 281 195 56 24 chr11 17504628 17504754 -104339102 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 8 718 201 26 79 0 chr11 17505100 17505138 -104338718 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 9 718 1688 175 88 15 chr11 17505547 17505889 -104337967 + ORR1B2 LTR MaLR 1 367 0 1 718 317 306 22 7 chr11 17506211 17506346 -104337510 + ORSL DNA Tip100 20 156 -119 1 718 236 269 0 19 chr11 17508695 17508748 -104335108 + BC1_Mm scRNA scRNA 3 54 -98 1 718 243 356 67 38 chr11 17509997 17510207 -104333649 + MIRb SINE MIR 5 220 -48 1 718 5518 2 0 0 chr11 17510216 17510821 -104333035 - L1Md_A LINE L1 0 6582 5978 1 718 1075 16 0 0 chr11 17510821 17510949 -104332907 + L1Md_A LINE L1 728 855 -5869 1 718 296 263 18 0 chr11 17511010 17511067 -104332789 - ID4_ SINE ID -17 66 9 1 718 375 23 0 0 chr11 17513755 17513799 -104330057 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 718 368 196 0 29 chr11 17513861 17513966 -104329890 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 718 486 0 0 0 chr11 17516120 17516174 -104327682 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 718 181 352 97 21 chr11 17516586 17516731 -104327125 + MIRc SINE MIR 42 197 -71 2 718 549 262 192 0 chr11 17516933 17517105 -104326751 - B3 SINE B2 0 216 12 2 718 1689 188 109 3 chr11 17518990 17519337 -104324519 + ORR1C2 LTR MaLR 1 384 0 2 718 253 381 49 24 chr11 17521096 17521260 -104322596 - MLT1C LTR MaLR 0 467 300 2 718 271 313 57 82 chr11 17521291 17521500 -104322356 - MLT1C LTR MaLR -229 238 39 2 718 31 26 0 0 chr11 17521665 17521703 -104322153 + AT_rich Low_complexity Low_complexity 1 38 0 2 718 5777 56 3 3 chr11 17522230 17523000 -104320856 + L1Md_F2 LINE L1 4816 5585 -298 2 718 7783 61 1 2 chr11 17523001 17523986 -104319870 + L1Md_F2 LINE L1 5587 6570 -12 2 718 422 295 36 0 chr11 17524096 17524208 -104319648 - PB1D10 SINE Alu -1 116 1 2 718 468 0 0 0 chr11 17525094 17525146 -104318710 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 718 429 268 123 80 chr11 17525409 17525571 -104318285 - B3A SINE B2 -3 195 27 2 718 783 59 0 0 chr11 17527271 17527372 -104316484 + (TC)n Simple_repeat Simple_repeat 2 102 0 2 718 29 47 0 0 chr11 17527374 17527417 -104316439 + AT_rich Low_complexity Low_complexity 1 43 0 3 718 454 312 115 43 chr11 17527547 17527825 -104316031 - Lx8 LINE L1 -181 7292 6995 3 718 365 312 23 65 chr11 17527865 17528081 -104315775 - L1_Mur3 LINE L1 -588 5292 5086 3 718 607 332 65 16 chr11 17528082 17528511 -104315345 - Lx8 LINE L1 -444 7029 6580 3 718 557 253 86 15 chr11 17528720 17528983 -104314873 - Lx7 LINE L1 -1674 5970 5697 3 718 500 230 118 0 chr11 17528982 17529015 -104314841 - L1M3 LINE L1 -546 5643 5611 3 718 457 58 0 28 chr11 17529015 17529086 -104314770 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 3 718 500 236 115 0 chr11 17529086 17529239 -104314617 - L1M3 LINE L1 -687 5610 5439 3 718 452 72 14 0 chr11 17529243 17529312 -104314544 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 718 720 89 0 0 chr11 17530112 17530213 -104313643 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 718 188 347 40 13 chr11 17531186 17531262 -104312594 + L2a LINE L2 3102 3179 -247 3 718 3149 62 3 0 chr11 17531280 17531670 -104312186 + MTA_Mm LTR MaLR 5 395 -1 4 718 280 224 17 0 chr11 17532557 17532615 -104311241 + MER5A1 DNA MER1_type 86 144 -22 4 718 509 280 17 0 chr11 17532958 17533076 -104310780 + RSINE1 SINE B4 29 148 -17 4 718 609 40 0 0 chr11 17533080 17533156 -104310700 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 718 219 36 0 0 chr11 17533497 17533525 -104310331 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 718 2700 61 0 20 chr11 17534670 17535021 -104308835 + L1_Mus1 LINE L1 6223 6566 -1 4 718 265 257 27 0 chr11 17535077 17535151 -104308705 + GA-rich Low_complexity Low_complexity 3 78 0 4 718 393 249 87 55 chr11 17536326 17536509 -104307347 + MER53 DNA hAT 5 193 0 4 718 891 250 43 49 chr11 17536536 17536881 -104306975 + RLTR15 LTR ERVK 1 343 -16 4 718 366 80 0 0 chr11 17537980 17538030 -104305826 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 4 718 21 0 0 0 chr11 17538093 17538114 -104305742 + AT_rich Low_complexity Low_complexity 1 21 0 5 718 271 314 33 44 chr11 17541212 17541302 -104302554 - L2b LINE L2 -1 3374 3286 5 718 399 306 18 121 chr11 17541368 17541591 -104302265 - MIR SINE MIR -35 227 28 5 718 334 265 14 5 chr11 17544023 17544100 -104299756 + Charlie5 DNA MER1_type 2 76 -2548 5 718 1402 302 67 16 chr11 17544111 17544680 -104299176 + Lx8 LINE L1 6729 7326 -147 5 718 764 185 36 30 chr11 17545076 17545243 -104298613 - B2_Mm2 SINE B2 -10 185 18 5 718 456 223 40 40 chr11 17545266 17545439 -104298417 + Charlie5 DNA MER1_type 2448 2620 -4 5 718 513 0 0 0 chr11 17545454 17545511 -104298345 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 718 2274 107 0 0 chr11 17545546 17545873 -104297983 - L1_Mm LINE L1 -107 5776 5450 5 718 7028 91 3 2 chr11 17545890 17547614 -104296242 - L1_Mus2 LINE L1 0 6566 4840 5 718 716 169 0 0 chr11 17547615 17547781 -104296075 - ORR1A3-int LTR MaLR -1080 883 718 5 718 588 191 28 71 chr11 17547658 17547799 -104296057 - MT2B LTR ERVL -332 269 135 6 718 30 27 0 0 chr11 17547963 17548000 -104295856 + AT_rich Low_complexity Low_complexity 1 37 0 6 718 25 75 0 0 chr11 17548139 17548192 -104295664 + AT_rich Low_complexity Low_complexity 1 53 0 6 718 5752 93 23 17 chr11 17549100 17550133 -104293723 - L1VL2 LINE L1 -1796 1819 791 6 718 2490 84 3 22 chr11 17550133 17550488 -104293368 - L1_Mus1 LINE L1 -8 6559 6212 6 718 5752 92 5 28 chr11 17550488 17551105 -104292751 - L1VL2 LINE L1 -5545 790 176 6 718 439 273 84 30 chr11 17551789 17551955 -104291901 - MER44D DNA MER2_type -64 641 468 6 718 1957 282 12 0 chr11 17552110 17552592 -104291264 + Lx6 LINE L1 6923 7410 -50 6 718 29 28 0 0 chr11 17552670 17552706 -104291150 + AT_rich Low_complexity Low_complexity 1 36 0 6 718 526 359 82 26 chr11 17552863 17553169 -104290687 - Tigger7 DNA MER2_type -366 339 17 6 718 1164 268 79 60 chr11 17553347 17553864 -104289992 - RMER5 LTR ERV1 0 534 8 6 718 249 119 0 0 chr11 17553917 17553959 -104289897 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 718 257 287 67 22 chr11 17554130 17554219 -104289637 - MIRb SINE MIR -147 121 29 7 718 516 268 97 83 chr11 17554421 17554757 -104289099 + ORR1E LTR MaLR 4 377 -2 7 718 1093 238 10 10 chr11 17554942 17555231 -104288625 - Lx5 LINE L1 0 7050 6762 7 718 374 291 29 73 chr11 17555774 17555911 -104287945 + MER45A DNA Tip100 45 175 -3 7 718 216 0 0 0 chr11 17556019 17556043 -104287813 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 718 709 252 157 13 chr11 17556730 17557035 -104286821 - Lx8 LINE L1 0 7473 7125 7 718 432 0 0 0 chr11 17557107 17557155 -104286701 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 718 1157 299 114 39 chr11 17557303 17558054 -104285802 + Lx8 LINE L1 6106 6913 -560 7 718 597 309 6 18 chr11 17558759 17558924 -104284932 + RSINE1 SINE B4 3 165 0 7 718 191 125 25 0 chr11 17558935 17558975 -104284881 + (GAAA)n Simple_repeat Simple_repeat 1 41 0 7 718 49 60 0 0 chr11 17559649 17559733 -104284123 + AT_rich Low_complexity Low_complexity 1 84 0 8 718 254 244 135 34 chr11 17559965 17560054 -104283802 + ORR1E LTR MaLR 7 104 -255 8 718 408 299 0 0 chr11 17560667 17560844 -104283012 + (CA)n Simple_repeat Simple_repeat 1 177 0 8 718 2273 182 8 55 chr11 17561650 17562122 -104281734 - RMER6B LTR ERVK -11 450 1 8 718 462 36 0 0 chr11 17562549 17562605 -104281251 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 8 719 191 242 31 31 chr11 17564587 17564651 -104279205 - L3 LINE CR1 -3504 985 922 8 719 441 0 0 0 chr11 17565375 17565424 -104278432 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 8 719 334 311 106 34 chr11 17565739 17565975 -104277881 + MIRc SINE MIR 16 268 0 8 719 231 61 0 0 chr11 17566859 17566892 -104276964 + (TTG)n Simple_repeat Simple_repeat 2 34 0 8 719 555 16 0 0 chr11 17567108 17567172 -104276684 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 719 34729 57 1 24 chr11 17567699 17573380 -104270476 + L1Md_T LINE L1 101 5586 -297 9 719 8009 57 0 0 chr11 17573380 17574376 -104269480 + L1Md_T LINE L1 5587 6582 0 9 719 26 0 0 0 chr11 17574748 17574774 -104269082 + AT_rich Low_complexity Low_complexity 1 26 0 9 719 255 327 87 17 chr11 17575095 17575210 -104268646 - PB1 SINE Alu -2 125 3 9 719 457 366 8 0 chr11 17575299 17575433 -104268423 + MER2B DNA MER2_type 201 335 -1 9 719 504 0 0 0 chr11 17576486 17576542 -104267314 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 719 30 0 0 0 chr11 17577171 17577201 -104266655 + AT_rich Low_complexity Low_complexity 1 30 0 9 719 485 76 13 0 chr11 17577845 17577924 -104265932 + (TA)n Simple_repeat Simple_repeat 2 81 0 9 719 282 56 0 0 chr11 17578115 17578151 -104265705 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 9 719 477 0 0 0 chr11 17579736 17579789 -104264067 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 719 486 0 0 0 chr11 17581415 17581469 -104262387 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 719 1483 278 73 30 chr11 17582335 17582869 -104260987 - Lx8 LINE L1 -706 6767 6211 1 719 624 156 0 0 chr11 17583213 17583322 -104260534 + GA-rich Low_complexity Low_complexity 2 110 0 1 719 251 225 0 14 chr11 17583854 17583926 -104259930 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 1 719 208 291 156 41 chr11 17583993 17584115 -104259741 + L2a LINE L2 3040 3175 -251 1 719 319 258 75 0 chr11 17584224 17584364 -104259492 - L1M5 LINE L1 -655 5789 5634 1 719 307 393 43 6 chr11 17584380 17584544 -104259312 - L1M5 LINE L1 -576 5597 5428 1 719 551 27 14 0 chr11 17584619 17584692 -104259164 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 719 1185 83 0 0 chr11 17584696 17584853 -104259003 - B2_Mm2 SINE B2 -37 158 2 1 719 297 185 0 0 chr11 17587328 17587393 -104256463 + GA-rich Low_complexity Low_complexity 2 66 0 1 719 281 229 33 0 chr11 17588564 17588625 -104255231 - ID4 SINE ID -12 71 9 1 719 180 111 0 0 chr11 17589789 17589816 -104254040 + (T)n Simple_repeat Simple_repeat 1 27 0 1 719 933 224 25 0 chr11 17589828 17590024 -104253832 - B3 SINE B2 -14 202 2 1 719 1484 224 3 100 chr11 17590312 17590703 -104253153 - RMER19C LTR ERVK -2 609 257 1 719 1752 184 13 3 chr11 17590703 17591009 -104252847 - RLTR27 LTR ERVK 0 309 1 1 719 1409 191 19 15 chr11 17591048 17591319 -104252537 - RMER19C LTR ERVK -339 272 1 1 719 692 42 10 0 chr11 17591734 17591830 -104252026 + L1_Mus2 LINE L1 6469 6565 -1 1 719 510 276 14 20 chr11 17592418 17592566 -104251290 - B1_Mur3 SINE Alu -2 147 1 1 719 207 0 0 0 chr11 17593191 17593214 -104250642 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 719 455 307 93 14 chr11 17593757 17593896 -104249960 + RSINE1 SINE B4 4 153 -12 1 719 279 0 0 0 chr11 17594658 17594689 -104249167 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 719 22 0 0 0 chr11 17594743 17594765 -104249091 + AT_rich Low_complexity Low_complexity 1 22 0 1 719 498 33 0 0 chr11 17597613 17597673 -104246183 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 719 16441 155 149 20 chr11 17597770 17599558 -104244298 + Lx3C LINE L1 772 2610 -3276 1 719 189 0 0 0 chr11 17599558 17599579 -104244277 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 719 16441 148 193 27 chr11 17599579 17601102 -104242754 + Lx3C LINE L1 2611 4734 -1152 1 719 208 0 62 0 chr11 17601102 17601134 -104242722 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 719 16441 145 125 20 chr11 17601134 17602481 -104241375 + Lx3C LINE L1 4735 6098 -878 1 719 2635 46 9 3 chr11 17602481 17602806 -104241050 + IAPLTR2b LTR ERVK 1 327 0 1 719 8032 141 14 10 chr11 17602806 17603665 -104240191 + Lx3C LINE L1 6099 6964 -12 1 719 216 0 0 0 chr11 17603669 17603693 -104240163 + (CATA)n Simple_repeat Simple_repeat 2 25 0 1 719 210 286 156 16 chr11 17603837 17603901 -104239955 + RSINE1 SINE B4 8 80 -85 1 719 369 0 0 0 chr11 17603902 17603943 -104239913 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 719 601 302 6 51 chr11 17603963 17604120 -104239736 + RSINE1 SINE B4 3 152 -13 1 719 231 36 0 0 chr11 17604126 17604154 -104239702 + (CATA)n Simple_repeat Simple_repeat 1 28 0 1 719 570 290 132 43 chr11 17604172 17604633 -104239223 + L1_Mur3 LINE L1 2173 2674 -3203 1 719 375 278 47 30 chr11 17604632 17604866 -104238990 + L1M2 LINE L1 2855 3092 -3051 1 719 214 239 10 61 chr11 17604917 17605015 -104238841 + T-rich Low_complexity Low_complexity 2 94 0 1 719 603 192 0 0 chr11 17605025 17605129 -104238727 - B3 SINE B2 -111 105 2 1 719 269 253 139 81 chr11 17605129 17605194 -104238662 + MT2A LTR ERVL 352 530 -3 1 719 440 224 37 20 chr11 17605218 17605344 -104238512 + ORR1D-int LTR MaLR 34 161 -1097 1 719 942 241 39 24 chr11 17605738 17605946 -104237910 + B3 SINE B2 6 216 0 1 719 2149 304 47 40 chr11 17606006 17607023 -104236833 + Lx8 LINE L1 6233 7256 -217 1 719 272 202 186 23 chr11 17607532 17607618 -104236238 - RSINE1 SINE B4 -60 105 6 1 719 311 157 42 14 chr11 17608016 17608087 -104235769 + B3 SINE B2 144 216 0 1 719 1433 75 0 0 chr11 17609042 17609229 -104234627 + L1_Mus1 LINE L1 6381 6567 0 1 719 525 32 0 0 chr11 17610144 17610207 -104233649 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 719 236 243 42 28 chr11 17612261 17612333 -104231523 - B4 SINE B4 -205 87 15 1 719 386 324 9 36 chr11 17612404 17612516 -104231340 + RSINE1 SINE B4 29 137 -28 1 719 428 51 17 0 chr11 17612518 17612577 -104231279 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 719 202 341 72 12 chr11 17612769 17612852 -104231004 - MIRc SINE MIR -153 115 28 1 719 22 80 0 0 chr11 17614815 17614865 -104228991 + AT_rich Low_complexity Low_complexity 1 50 0 1 719 28186 123 12 6 chr11 17614908 17618653 -104225203 - L1_Mus3 LINE L1 -8 6630 2887 1 719 849 20 0 0 chr11 17618653 17618752 -104225104 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 1 719 28186 142 37 11 chr11 17618752 17621112 -104222744 - L1_Mus3 LINE L1 -2997 2886 426 1 719 504 0 0 0 chr11 17621132 17621188 -104222668 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 719 210 71 0 0 chr11 17621211 17621239 -104222617 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 719 701 279 16 42 chr11 17621240 17621431 -104222425 - B3 SINE B2 -30 186 1 1 719 396 267 40 20 chr11 17621437 17621586 -104222270 - L1_Rod LINE L1 -635 5212 5061 1 719 213 245 10 19 chr11 17621740 17621844 -104222012 + CT-rich Low_complexity Low_complexity 5 107 0 1 719 584 165 6 0 chr11 17621861 17622037 -104221819 + CT-rich Low_complexity Low_complexity 1 177 0 1 719 257 257 286 0 chr11 17622039 17622144 -104221712 - ID_B1 SINE B4 0 224 90 1 719 618 337 41 0 chr11 17623091 17623169 -104220687 + ID SINE ID 1 86 -138 1 719 247 351 96 7 chr11 17623169 17623304 -104220552 + B1F1 SINE Alu 1 147 -2 1 719 186 43 0 0 chr11 17624174 17624197 -104219659 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 719 396 0 0 0 chr11 17624202 17624246 -104219610 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 719 544 248 102 81 chr11 17624257 17624542 -104219314 - B4 SINE B4 0 292 2 1 719 180 229 20 40 chr11 17625244 17625294 -104218562 - L2a LINE L2 -76 3350 3302 1 719 25 0 0 0 chr11 17626524 17626549 -104217307 + AT_rich Low_complexity Low_complexity 1 25 0 1 719 297 253 50 12 chr11 17628435 17628515 -104215341 - B1F1 SINE Alu 0 149 67 1 719 239 316 40 50 chr11 17628515 17628535 -104215321 - ID_B1 SINE B4 -2 222 124 1 719 279 0 0 0 chr11 17628548 17628579 -104215277 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 719 613 264 23 0 chr11 17628594 17628723 -104215133 - RSINE1 SINE B4 -25 140 9 1 719 599 0 14 0 chr11 17628834 17628905 -104214951 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1 719 350 252 0 2 chr11 17629065 17629139 -104214717 - ID4 SINE ID -10 73 1 1 719 186 43 0 0 chr11 17629800 17629823 -104214033 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 719 1893 263 69 40 chr11 17630068 17630682 -104213174 - L1_Mur3 LINE L1 -911 4969 4357 1 719 621 90 0 0 chr11 17630682 17630771 -104213085 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 719 1893 263 69 40 chr11 17630771 17631128 -104212728 - L1_Mur3 LINE L1 -1524 4356 3970 1 719 405 0 0 0 chr11 17631328 17631373 -104212483 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1 719 21 36 0 0 chr11 17631373 17631401 -104212455 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 536 281 5 94 chr11 17631432 17631464 -104212392 - B3A SINE B2 -1 197 168 1 719 462 49 0 0 chr11 17631464 17631525 -104212331 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 719 536 281 5 94 chr11 17631525 17631704 -104212152 - B3A SINE B2 -31 167 6 1 719 1786 237 15 182 chr11 17631856 17632572 -104211284 - RMER19C LTR ERVK 0 611 15 1 719 21 71 0 0 chr11 17633606 17633648 -104210208 + AT_rich Low_complexity Low_complexity 1 42 0 1 719 23 33 0 0 chr11 17634028 17634058 -104209798 + AT_rich Low_complexity Low_complexity 1 30 0 1 719 212 218 0 37 chr11 17634178 17634259 -104209597 + (CATGT)n Simple_repeat Simple_repeat 2 79 0 1 719 687 357 87 17 chr11 17634486 17634959 -104208897 + Charlie25 DNA MER1_type 1272 1777 -747 1 719 560 301 113 79 chr11 17635013 17635508 -104208348 - Lx8 LINE L1 -17 7456 6945 1 719 210 271 0 14 chr11 17635769 17635840 -104208016 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 719 671 322 132 16 chr11 17635848 17636151 -104207705 - MLT2D LTR ERVL -76 338 1 1 719 242 362 98 0 chr11 17636327 17636490 -104207366 + MIR SINE MIR 84 262 0 1 719 673 316 78 82 chr11 17636707 17637242 -104206614 + MT2A LTR ERVL 1 533 0 1 719 23 0 0 0 chr11 17638546 17638569 -104205287 + AT_rich Low_complexity Low_complexity 1 23 0 1 719 404 271 28 0 chr11 17639319 17639426 -104204430 - Charlie15a DNA MER1_type 0 224 115 1 719 600 129 14 21 chr11 17639785 17639928 -104203928 + (TCTCTG)n Simple_repeat Simple_repeat 5 146 0 1 719 180 77 0 0 chr11 17639982 17640008 -104203848 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 719 601 291 20 36 chr11 17641206 17641402 -104202454 + B3 SINE B2 24 216 0 1 719 333 0 0 0 chr11 17641497 17641534 -104202322 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 719 486 0 0 0 chr11 17641534 17641587 -104202269 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 719 2832 60 0 3 chr11 17641636 17642001 -104201855 - L1_Mus1 LINE L1 -1 6566 6203 1 719 414 306 66 15 chr11 17642620 17642892 -104200964 + L1MC5 LINE L1 7503 7788 -173 1 719 882 98 0 0 chr11 17644218 17644371 -104199485 + (GA)n Simple_repeat Simple_repeat 2 154 0 1 719 225 259 17 0 chr11 17645589 17645647 -104198209 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 719 360 216 0 0 chr11 17645856 17645953 -104197903 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 719 778 320 65 5 chr11 17645971 17646436 -104197420 - L1_Mur3 LINE L1 -642 5238 4747 1 719 1698 290 92 67 chr11 17646426 17647531 -104196325 - L1_Mur3 LINE L1 -3143 2737 1572 1 719 933 77 52 30 chr11 17647531 17647665 -104196191 - B1_Mus2 SINE Alu -9 138 2 1 719 1698 302 83 60 chr11 17647665 17648065 -104195791 - L1_Mur3 LINE L1 -4242 1605 1205 1 719 2108 109 24 21 chr11 17648126 17648454 -104195402 - ORR1A4 LTR MaLR 0 329 1 1 719 780 282 24 5 chr11 17648455 17648662 -104195194 - B3 SINE B2 -3 213 3 1 719 784 264 55 72 chr11 17651117 17651407 -104192449 + B4A SINE B4 2 286 -6 2 719 630 321 86 22 chr11 17651822 17652182 -104191674 - L1MD2 LINE L1 -25 6334 5952 2 719 3520 252 71 64 chr11 17652193 17652693 -104191163 - Lx6 LINE L1 -6 7454 6923 2 719 777 41 0 0 chr11 17652693 17652790 -104191066 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 2 719 3520 252 71 64 chr11 17652790 17653304 -104190552 - Lx6 LINE L1 -538 6922 6433 2 719 956 147 126 0 chr11 17653295 17653493 -104190363 - L1_Mur3 LINE L1 -1647 4233 4011 2 719 312 320 81 4 chr11 17653487 17653706 -104190150 - L1MD2 LINE L1 -413 5946 5707 2 719 207 184 0 0 chr11 17653759 17653797 -104190059 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 719 572 266 7 20 chr11 17653895 17654041 -104189815 + B1_Mur4 SINE Alu 1 144 -6 2 719 261 190 68 17 chr11 17654042 17654160 -104189696 + A-rich Low_complexity Low_complexity 3 126 0 2 719 847 249 19 0 chr11 17654421 17654630 -104189226 - B3 SINE B2 -1 215 3 2 719 253 269 73 90 chr11 17654999 17655173 -104188683 + MLT1A0 LTR MaLR 2 185 -180 2 719 930 283 9 9 chr11 17655206 17655530 -104188326 - ORR1D2 LTR MaLR -6 364 1 2 719 303 309 100 54 chr11 17659194 17659325 -104184531 - MLT1G1 LTR MaLR -7 572 408 2 719 225 319 56 12 chr11 17660527 17660689 -104183167 + MER121 Unknown Unknown 114 282 -130 2 719 558 0 0 0 chr11 17660802 17660864 -104182992 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 719 444 67 0 0 chr11 17660864 17660923 -104182933 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 719 1336 243 17 7 chr11 17661602 17661892 -104181964 + RMER13A LTR ERVK 568 860 0 2 719 387 60 0 0 chr11 17663258 17663308 -104180548 + (TAG)n Simple_repeat Simple_repeat 1 50 0 2 719 1249 239 99 56 chr11 17664194 17664474 -104179382 - MTE2a LTR MaLR -9 370 74 2 719 570 15 0 0 chr11 17664474 17664541 -104179315 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 719 1249 239 99 56 chr11 17664541 17664615 -104179241 - MTE2a LTR MaLR -306 73 1 2 719 605 280 55 76 chr11 17664615 17664900 -104178956 + ORR1E LTR MaLR 81 359 0 2 719 570 306 36 67 chr11 17666035 17666259 -104177597 - ID_B1 SINE B4 0 224 8 2 719 38 39 0 0 chr11 17666290 17666342 -104177514 + AT_rich Low_complexity Low_complexity 1 52 0 2 719 203 250 94 0 chr11 17666529 17666593 -104177263 - MER5B DNA MER1_type -5 173 104 2 719 25 0 0 0 chr11 17667339 17667364 -104176492 + AT_rich Low_complexity Low_complexity 1 25 0 2 719 242 321 12 35 chr11 17667364 17667535 -104176321 + (TATG)n Simple_repeat Simple_repeat 4 170 0 2 719 218 161 0 35 chr11 17669808 17669866 -104173990 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 719 424 290 30 0 chr11 17669876 17669976 -104173880 + MER20 DNA MER1_type 97 199 -20 2 719 201 204 41 0 chr11 17670585 17670634 -104173222 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2 719 455 341 90 34 chr11 17671182 17671449 -104172407 + B4A SINE B4 5 286 -6 2 719 237 343 139 0 chr11 17671812 17671978 -104171878 + MER5A DNA MER1_type 1 189 0 2 719 192 40 0 0 chr11 17673341 17673366 -104170490 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 719 452 49 2 15 chr11 17674062 17674130 -104169726 - L1_Mm LINE L1 -3738 2142 2070 2 719 7055 58 10 20 chr11 17674130 17675056 -104168800 + L1Md_F2 LINE L1 5655 6570 -12 2 719 433 266 21 0 chr11 17675518 17675612 -104168244 - B3 SINE B2 -120 96 1 2 719 332 263 214 26 chr11 17675838 17675955 -104167901 + MLT1A0 LTR MaLR 24 162 -212 2 719 710 238 7 7 chr11 17675977 17676129 -104167727 + MLT1A0 LTR MaLR 210 361 -4 2 719 691 228 71 11 chr11 17676888 17677070 -104166786 + Lx2B LINE L1 6806 6998 -2 2 719 332 363 112 53 chr11 17677166 17677340 -104166516 - ORR1E LTR MaLR -12 347 163 2 719 1832 167 15 6 chr11 17677340 17677666 -104166190 + ORR1A4 LTR MaLR 1 329 0 2 719 332 363 112 53 chr11 17677666 17677814 -104166042 - ORR1E LTR MaLR -197 162 7 2 719 778 247 11 40 chr11 17677866 17678043 -104165813 + B3A SINE B2 1 172 -26 2 719 455 69 22 44 chr11 17678074 17678165 -104165691 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 719 314 280 48 8 chr11 17678354 17678480 -104165376 + L1VL2 LINE L1 68 198 -6137 2 719 26985 124 10 44 chr11 17678570 17682826 -104161030 + Lx2 LINE L1 552 4688 -1198 2 719 207 0 0 0 chr11 17682826 17682849 -104161007 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 719 26985 120 16 44 chr11 17682849 17684169 -104159687 + Lx2 LINE L1 4689 6024 -976 2 719 180 111 0 0 chr11 17684169 17684196 -104159660 + (CAGAGA)n Simple_repeat Simple_repeat 3 29 0 2 719 2187 75 113 0 chr11 17684196 17684250 -104159606 + Lx2 LINE L1 6025 6098 -471 2 719 232 208 0 19 chr11 17684340 17684394 -104159462 + MamGypLTR1d LTR Gypsy 744 796 -17 2 719 652 193 17 9 chr11 17684747 17684862 -104158994 - B3A SINE B2 -49 149 34 2 719 3926 67 2 4 chr11 17684893 17685401 -104158455 - L1_Mus1 LINE L1 -16 6551 6045 2 719 224 299 128 18 chr11 17685416 17685525 -104158331 + L2a LINE L2 3283 3403 -23 2 719 210 304 58 0 chr11 17685606 17685675 -104158181 - L2a LINE L2 -34 3392 3320 2 719 182 283 38 0 chr11 17685814 17685867 -104157989 + L2 LINE L2 2280 2334 -1085 2 719 294 29 0 0 chr11 17686021 17686056 -104157800 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 719 398 176 25 8 chr11 17686183 17686303 -104157553 + (TA)n Simple_repeat Simple_repeat 2 123 0 2 719 644 168 0 36 chr11 17686303 17686414 -104157442 - B2_Mm2 SINE B2 -88 107 1 2 719 201 147 0 0 chr11 17686470 17686504 -104157352 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 2 719 280 243 182 39 chr11 17686515 17686592 -104157264 - B1F1 SINE Alu -55 94 7 2 719 498 157 0 0 chr11 17688499 17688601 -104155255 + GA-rich Low_complexity Low_complexity 1 102 0 2 719 4113 165 51 45 chr11 17689521 17689717 -104154139 + L1_Mur3 LINE L1 2939 3158 -2722 2 719 4107 81 13 4 chr11 17689717 17690321 -104153535 + L1_Mus3 LINE L1 6070 6638 0 2 719 4113 165 51 45 chr11 17690321 17690911 -104152945 + L1_Mur3 LINE L1 3159 3755 -2125 2 719 3057 68 18 0 chr11 17690911 17691309 -104152547 + L1_Mus1 LINE L1 6162 6566 -1 2 719 4113 165 51 45 chr11 17691309 17691553 -104152303 + L1_Mur3 LINE L1 3756 3979 -1901 2 89 17391 128 168 6 chr11 17691610 17696668 -104147188 + L1_Mus3 LINE L1 710 6637 -1 2 720 1241 184 44 7 chr11 17696662 17696936 -104146920 + L1_Mur3 LINE L1 3962 4245 -1635 2 720 480 62 112 0 chr11 17696926 17697006 -104146850 + L1_Mur3 LINE L1 5298 5386 -494 2 720 1702 221 71 33 chr11 17697075 17697556 -104146300 + RMER1C Other Other 824 1322 -20 2 720 632 205 87 6 chr11 17697674 17697846 -104146010 - Lx4B LINE L1 -7 7051 6866 2 720 590 293 138 19 chr11 17697879 17698241 -104145615 - Charlie1a DNA MER1_type -559 896 492 2 720 610 293 43 23 chr11 17698318 17698622 -104145234 + L1_Mur3 LINE L1 4517 4826 -1054 2 720 231 163 0 117 chr11 17698622 17698728 -104145128 + T-rich Low_complexity Low_complexity 5 98 0 2 720 593 14 0 13 chr11 17698728 17698803 -104145053 + (TTGG)n Simple_repeat Simple_repeat 2 75 0 2 720 798 276 103 68 chr11 17698812 17698929 -104144927 + Lx9 LINE L1 4802 4946 -1197 2 720 837 184 7 0 chr11 17698929 17699070 -104144786 - B1_Mur4 SINE Alu -8 142 1 2 720 798 276 103 69 chr11 17699070 17699361 -104144495 + Lx9 LINE L1 4947 5285 -858 2 720 207 0 0 0 chr11 17699361 17699384 -104144472 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 720 798 309 110 54 chr11 17699384 17699979 -104143877 + Lx9 LINE L1 5222 5905 -1739 2 720 1144 300 56 8 chr11 17700377 17700968 -104142888 - L1MC LINE L1 -913 5431 4810 2 720 369 333 63 0 chr11 17701025 17701136 -104142720 + B3 SINE B2 94 211 -5 2 720 3496 101 101 23 chr11 17702196 17702762 -104141094 - Lx LINE L1 -7 6647 6038 2 720 584 242 70 65 chr11 17703990 17704189 -104139667 + B3 SINE B2 2 201 -15 2 720 234 172 50 10 chr11 17704189 17704289 -104139567 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 720 231 170 0 102 chr11 17704649 17704708 -104139148 + MIR3 SINE MIR 132 184 -24 2 720 9738 146 16 5 chr11 17704858 17707806 -104136050 - Lx2A LINE L1 -7 7001 4011 2 720 410 327 133 45 chr11 17710120 17710450 -104133406 - ORR1E LTR MaLR 0 359 1 2 720 292 305 18 62 chr11 17710626 17710738 -104133118 + MIR SINE MIR 46 152 -110 2 720 345 100 0 0 chr11 17711308 17711358 -104132498 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 720 381 164 0 0 chr11 17712625 17712698 -104131158 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 720 654 266 0 0 chr11 17713612 17713755 -104130101 + B1_Mur1 SINE Alu 3 145 -4 2 720 3468 18 5 0 chr11 17714166 17714557 -104129299 + MTA_Mm LTR MaLR 1 393 -3 2 720 5006 29 12 3 chr11 17714557 17715150 -104128706 + L1Md_F2 LINE L1 5985 6582 0 2 720 14552 144 19 16 chr11 17717198 17720633 -104123223 + L1VL4 LINE L1 419 3867 -2276 2 720 4566 112 12 6 chr11 17720635 17721301 -104122555 + L1_Mus3 LINE L1 5969 6638 0 2 720 202 291 36 0 chr11 17721748 17721803 -104122053 + L2 LINE L2 1292 1348 -2071 2 720 258 242 0 0 chr11 17722521 17722587 -104121269 + CT-rich Low_complexity Low_complexity 1 66 0 2 720 266 296 17 93 chr11 17722587 17722697 -104121159 + ORR1E LTR MaLR 198 292 -87 2 720 1186 251 116 11 chr11 17722697 17723011 -104120845 + MTD LTR MaLR 1 341 -78 2 720 297 0 0 0 chr11 17723011 17723044 -104120812 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 2 720 1186 251 116 11 chr11 17723044 17723108 -104120748 + MTD LTR MaLR 342 418 -1 2 720 270 236 94 1 chr11 17723108 17723183 -104120673 + ORR1E LTR MaLR 278 356 -3 2 720 1160 251 25 45 chr11 17724355 17724797 -104119059 + L1_Mur3 LINE L1 4483 4915 -965 2 720 1404 263 86 16 chr11 17724804 17725302 -104118554 + MT2A LTR ERVL 1 533 0 2 720 1725 328 29 30 chr11 17725306 17726114 -104117742 + Lx8 LINE L1 6227 7033 -440 2 720 22 0 0 0 chr11 17726210 17726232 -104117624 + AT_rich Low_complexity Low_complexity 1 22 0 2 720 658 280 48 5 chr11 17726327 17726514 -104117342 + B3 SINE B2 4 198 -18 2 720 33 80 0 0 chr11 17726571 17726646 -104117210 + AT_rich Low_complexity Low_complexity 1 75 0 2 720 2822 209 66 13 chr11 17726689 17727382 -104116474 - Lx9 LINE L1 -184 7460 6731 2 720 470 17 17 0 chr11 17727386 17727445 -104116411 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 720 210 37 0 0 chr11 17728334 17728361 -104115495 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 720 914 276 79 25 chr11 17728667 17729035 -104114821 - Lx8 LINE L1 -3 7470 7083 2 720 300 268 0 0 chr11 17729061 17729117 -104114739 + PB1D9 SINE Alu 1 56 -64 3 720 276 263 130 9 chr11 17730397 17730512 -104113344 - Lx8 LINE L1 -99 7374 7246 3 720 576 29 0 0 chr11 17730609 17730679 -104113177 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 720 727 172 269 49 chr11 17730953 17731302 -104112554 - RMER1B Other Other -2 1064 640 3 720 661 192 117 0 chr11 17731430 17731550 -104112306 + B1_Mus1 SINE Alu 3 136 -12 3 720 182 37 37 0 chr11 17731551 17731578 -104112278 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3 720 302 0 26 0 chr11 17732050 17732088 -104111768 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 720 269 350 217 0 chr11 17732175 17732378 -104111478 + Arthur1C DNA Tip100 100 346 -17 3 720 1812 142 0 43 chr11 17733100 17733425 -104110431 + Lx3A LINE L1 6664 6974 -7 3 720 21 0 0 0 chr11 17733426 17733447 -104110409 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 2012 224 58 72 chr11 17734363 17734985 -104108871 - RLTR18 LTR ERVK -3 613 1 3 720 206 182 0 0 chr11 17735781 17735814 -104108042 - MIRb SINE MIR -9 259 227 3 720 224 97 0 0 chr11 17735786 17735819 -104108037 - L2c LINE L2 -18 3369 3325 3 720 998 142 47 0 chr11 17736049 17736208 -104107648 + RMER6A LTR ERVK 1 167 -589 3 720 2673 64 3 0 chr11 17736208 17736553 -104107303 - ORR1A1 LTR MaLR 0 346 1 3 720 3546 131 22 18 chr11 17736553 17737142 -104106714 + RMER6A LTR ERVK 166 756 0 3 720 456 331 110 59 chr11 17737577 17737968 -104105888 - MLT1D LTR MaLR -33 472 62 3 720 20891 161 58 33 chr11 17738444 17744033 -104099823 + Lx4B LINE L1 893 6645 -413 3 720 1735 41 0 0 chr11 17744030 17744251 -104099605 - L1_Mus2 LINE L1 -641 5925 5705 3 720 4693 73 18 10 chr11 17744251 17744876 -104098980 + L1_Mus2 LINE L1 5937 6566 0 3 720 821 282 78 17 chr11 17744880 17745226 -104098630 + Lx2B LINE L1 6630 6996 -4 3 720 256 368 28 9 chr11 17745332 17745439 -104098417 - PB1D7 SINE Alu -6 114 6 3 720 1802 85 33 4 chr11 17745458 17745729 -104098127 - Lx LINE L1 -5 6649 6371 3 720 276 77 0 0 chr11 17745827 17745866 -104097990 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 720 357 337 38 38 chr11 17745913 17746178 -104097678 + L2 LINE L2 2656 2920 -499 3 720 256 206 0 88 chr11 17746732 17746812 -104097044 + L1MB8 LINE L1 6092 6164 -14 3 720 232 233 11 23 chr11 17747479 17747567 -104096289 + (TAA)n Simple_repeat Simple_repeat 3 89 0 3 720 5032 56 0 2 chr11 17747707 17748336 -104095520 + L1Md_F2 LINE L1 5954 6581 -1 3 720 210 91 0 0 chr11 17750019 17750052 -104093804 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 720 547 217 0 74 chr11 17750437 17750586 -104093270 + B1_Mur1 SINE Alu 5 142 -7 3 720 208 154 37 37 chr11 17750600 17750654 -104093202 + (CAGG)n Simple_repeat Simple_repeat 2 55 0 3 720 189 0 0 0 chr11 17751677 17751698 -104092158 + (A)n Simple_repeat Simple_repeat 1 21 0 3 720 792 259 34 5 chr11 17751980 17752186 -104091670 - B3 SINE B2 -4 212 1 3 720 23 54 0 0 chr11 17752825 17752862 -104090994 + AT_rich Low_complexity Low_complexity 1 37 0 3 720 24 32 0 0 chr11 17753051 17753082 -104090774 + AT_rich Low_complexity Low_complexity 1 31 0 3 720 236 283 68 14 chr11 17754057 17754183 -104089673 + MIRb SINE MIR 44 171 -97 3 720 264 30 0 0 chr11 17754904 17754937 -104088919 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 720 513 0 0 0 chr11 17754937 17754993 -104088863 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 720 476 308 45 107 chr11 17755673 17755982 -104087874 + B4A SINE B4 2 291 -1 3 720 949 113 14 0 chr11 17758153 17758295 -104085561 + B1_Mus1 SINE Alu 5 148 0 3 720 940 149 0 11 chr11 17758301 17758477 -104085379 + GA-rich Low_complexity Low_complexity 3 176 0 3 720 396 0 0 0 chr11 17760080 17760124 -104083732 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 720 21 36 0 0 chr11 17760278 17760306 -104083550 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 394 272 93 29 chr11 17761395 17761535 -104082321 + B1_Mur1 SINE Alu 1 149 0 3 720 305 24 24 0 chr11 17762232 17762274 -104081582 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 720 796 268 0 0 chr11 17762755 17762919 -104080937 + B3 SINE B2 1 164 -52 3 720 234 0 0 0 chr11 17762919 17762945 -104080911 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 720 749 267 11 48 chr11 17762945 17762969 -104080887 + B3A SINE B2 160 182 -16 3 720 270 308 66 53 chr11 17763163 17763314 -104080542 - MIRb SINE MIR -38 230 78 3 720 367 165 91 6 chr11 17763631 17763796 -104080060 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 720 443 212 52 12 chr11 17763734 17763906 -104079950 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 3 720 229 187 80 16 chr11 17763827 17763952 -104079904 + (TA)n Simple_repeat Simple_repeat 2 134 0 3 720 1105 216 60 11 chr11 17764000 17764267 -104079589 + Lx6 LINE L1 7170 7449 -11 3 720 202 183 16 32 chr11 17764680 17764742 -104079114 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 3 720 7552 139 37 15 chr11 17765169 17766536 -104077320 - Lx4B LINE L1 -4 7054 5673 3 720 24 32 0 0 chr11 17766801 17766832 -104077024 + AT_rich Low_complexity Low_complexity 1 31 0 3 720 771 69 0 0 chr11 17766839 17766940 -104076916 - B1_Mus2 SINE Alu 0 147 47 3 720 730 44 0 0 chr11 17766941 17767031 -104076825 + L1Md_F2 LINE L1 6290 6379 -203 3 720 564 89 0 0 chr11 17767031 17767110 -104076746 + B1_Mur4 SINE Alu 72 150 0 3 720 1484 16 0 55 chr11 17767125 17767330 -104076526 + L1Md_F2 LINE L1 6382 6582 0 3 720 1484 16 0 55 chr11 17767330 17767348 -104076508 + L1Md_F2 LINE L1 6561 6570 -12 3 720 497 333 62 8 chr11 17767455 17767715 -104076141 - B4 SINE B4 -16 276 3 3 720 378 114 0 0 chr11 17767867 17767937 -104075919 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 720 579 303 80 15 chr11 17770019 17770220 -104073636 + ID_B1 SINE B4 3 216 -8 3 720 25 75 0 0 chr11 17771358 17771411 -104072445 + AT_rich Low_complexity Low_complexity 1 53 0 3 720 255 61 0 0 chr11 17771865 17771898 -104071958 + (T)n Simple_repeat Simple_repeat 1 33 0 3 720 189 102 19 58 chr11 17773136 17773188 -104070668 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 3 720 191 385 81 16 chr11 17774644 17774829 -104069027 - L2 LINE L2 -966 2453 2257 3 720 372 250 36 103 chr11 17775154 17775319 -104068537 + RMER19C LTR ERVK 1 154 -457 3 720 25844 122 14 3 chr11 17775339 17781619 -104062237 + L1_Mus2 LINE L1 220 6566 0 3 720 1023 241 35 19 chr11 17781622 17781935 -104061921 - RMER17C LTR ERVK -14 396 79 3 720 1857 255 6 83 chr11 17781953 17782458 -104061398 + RMER19C LTR ERVK 146 611 0 3 720 486 276 127 26 chr11 17783998 17784447 -104059409 + L1_Rod LINE L1 1292 1756 -4130 3 720 1209 92 17 17 chr11 17784597 17784773 -104059083 - ORR1A4 LTR MaLR -6 323 148 3 720 32083 70 3 3 chr11 17784773 17786205 -104057651 - L1Md_F2 LINE L1 -12 6570 5138 3 720 1229 106 11 16 chr11 17786205 17786388 -104057468 - B2_Mm1t SINE B2 -7 186 5 3 720 32083 101 15 11 chr11 17786388 17791213 -104052643 - L1Md_F2 LINE L1 -746 5137 294 3 720 991 212 6 58 chr11 17791215 17791465 -104052391 - ORR1B1 LTR MaLR -165 229 1 3 720 1418 298 37 7 chr11 17791724 17792451 -104051405 + L1_Mur3 LINE L1 2839 3587 -2293 3 720 198 0 0 0 chr11 17792521 17792543 -104051313 + (A)n Simple_repeat Simple_repeat 1 22 0 3 720 384 59 0 0 chr11 17792784 17792835 -104051021 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 720 3751 273 50 63 chr11 17792986 17793992 -104049864 + L1_Mur3 LINE L1 3598 4576 -1304 3 720 1258 34 0 0 chr11 17793992 17794138 -104049718 + B1_Mus1 SINE Alu 2 147 -1 3 720 3751 273 50 63 chr11 17794138 17794153 -104049703 + L1_Mur3 LINE L1 4577 4580 -1300 3 720 621 0 0 0 chr11 17794153 17794222 -104049634 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 3 720 3751 274 49 62 chr11 17794222 17795106 -104048750 + L1_Mur3 LINE L1 4581 5508 -792 3 720 1278 83 16 16 chr11 17795115 17795299 -104048557 - B2_Mm2 SINE B2 -4 191 8 3 720 26 0 0 0 chr11 17795299 17795325 -104048531 + AT_rich Low_complexity Low_complexity 1 26 0 3 720 761 241 157 8 chr11 17795327 17795594 -104048262 + L1_Rod LINE L1 5459 5765 -82 3 720 21 0 0 0 chr11 17797100 17797121 -104046735 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 1278 281 100 3 chr11 17797561 17797942 -104045914 + Lx5 LINE L1 6625 7042 -8 3 720 1201 124 0 54 chr11 17798408 17798612 -104045244 - B2_Mm2 SINE B2 -1 194 2 3 720 489 17 0 0 chr11 17798801 17798859 -104044997 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 720 326 302 20 148 chr11 17799236 17799341 -104044515 - L1M2 LINE L1 -1045 5098 5004 3 720 1185 69 0 0 chr11 17799341 17799485 -104044371 + B1_Mus2 SINE Alu 2 145 -2 3 720 326 302 20 148 chr11 17799485 17799581 -104044275 - L1M2 LINE L1 -1140 5003 4923 3 720 265 299 52 0 chr11 17799585 17799662 -104044194 - MTEa LTR MaLR 0 379 299 3 720 517 141 9 75 chr11 17799622 17799729 -104044127 + B1_Mur4 SINE Alu 40 139 -11 3 720 270 0 0 0 chr11 17799729 17799759 -104044097 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 720 1068 75 7 0 chr11 17800284 17800422 -104043434 + B1_Mus2 SINE Alu 1 139 -8 3 720 228 35 0 0 chr11 17800422 17800451 -104043405 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 720 772 196 0 8 chr11 17800547 17800681 -104043175 - B1_Mur4 SINE Alu -13 137 5 3 720 2166 101 203 9 chr11 17801048 17801397 -104042459 + RLTR9B2 LTR ERVK 1 417 -3 3 720 186 43 0 0 chr11 17801682 17801705 -104042151 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 720 259 319 0 0 chr11 17801707 17801776 -104042080 - ID4_ SINE ID -9 74 6 3 720 260 368 108 4 chr11 17801815 17802047 -104041809 - L2 LINE L2 -640 2779 2524 3 720 318 333 114 13 chr11 17802078 17802236 -104041620 - MIRb SINE MIR -1 267 94 3 720 1158 75 0 0 chr11 17802443 17802590 -104041266 + B1_Mm SINE Alu 1 147 0 3 720 438 165 0 0 chr11 17802591 17802670 -104041186 + GA-rich Low_complexity Low_complexity 2 80 0 3 720 615 276 100 103 chr11 17803429 17803809 -104040047 - MTE2a LTR MaLR 0 379 1 3 720 675 228 105 0 chr11 17803817 17803979 -104039877 + ORR1D1 LTR MaLR 5 183 -191 3 720 1475 155 75 154 chr11 17803999 17804360 -104039496 + ORR1B2 LTR MaLR 3 339 -28 4 720 3080 86 2 2 chr11 17804360 17804781 -104039075 - BGLII LTR ERVK 0 421 1 4 720 1475 155 75 154 chr11 17804781 17804808 -104039048 + ORR1B2 LTR MaLR 340 360 -7 4 720 1115 70 6 0 chr11 17804820 17804991 -104038865 + (TCTA)n Simple_repeat Simple_repeat 1 172 0 4 720 230 297 50 70 chr11 17805056 17805255 -104038601 - LTRIS5 LTR ERV1 -56 391 197 4 720 423 321 53 23 chr11 17805612 17805913 -104037943 - MURVY-int LTR ERV1 -109 7343 7053 4 720 594 0 0 0 chr11 17806289 17806355 -104037501 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 720 2312 344 88 45 chr11 17807857 17811832 -104032024 - MuLV-int LTR ERV1 -2296 5310 1167 4 720 289 348 38 14 chr11 17812225 17812438 -104031418 - MuLV-int LTR ERV1 -6815 791 574 4 720 4024 61 13 16 chr11 17812718 17813265 -104030591 + LTRIS2 LTR ERV1 20 564 0 4 720 1326 73 36 5 chr11 17813268 17813462 -104030394 - L1Md_F2 LINE L1 -491 6091 5892 4 720 373 19 0 36 chr11 17813533 17813589 -104030267 + (TTAA)n Simple_repeat Simple_repeat 3 56 0 4 720 2463 180 47 20 chr11 17813925 17814417 -104029439 - RLTR31A_Mm LTR ERVK 0 557 1 4 720 662 256 57 38 chr11 17814651 17814862 -104028994 + ID_B1 SINE B4 3 217 -7 4 720 871 106 14 0 chr11 17814877 17815019 -104028837 + (GGA)n Simple_repeat Simple_repeat 2 145 0 4 720 1980 116 66 0 chr11 17815048 17815350 -104028506 + ORR1A2 LTR MaLR 1 322 -5 4 720 22 80 0 0 chr11 17815620 17815670 -104028186 + AT_rich Low_complexity Low_complexity 1 50 0 4 720 1120 49 28 7 chr11 17815929 17816073 -104027783 - B1_Mm SINE Alu 0 147 1 4 720 5396 173 28 80 chr11 17816133 17817296 -104026560 + RLTR25A LTR ERVK 1 1103 0 4 720 1308 238 58 16 chr11 17818053 17818416 -104025440 + RMER17C LTR ERVK 1 378 -32 4 720 247 303 139 19 chr11 17818762 17819028 -104024828 + L1_Rod LINE L1 2104 2401 -3446 4 720 21 71 0 0 chr11 17819050 17819092 -104024764 + AT_rich Low_complexity Low_complexity 1 42 0 4 720 296 277 28 28 chr11 17819181 17819322 -104024534 + L1MA4 LINE L1 4719 4859 -1284 4 720 201 114 57 0 chr11 17819412 17819447 -104024409 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 720 637 205 0 8 chr11 17819448 17819566 -104024290 - PB1D9 SINE Alu -3 117 1 4 720 948 259 60 27 chr11 17819567 17820084 -104023772 + L1MA4 LINE L1 4952 5484 -813 4 720 736 200 0 15 chr11 17820089 17820221 -104023635 + B1_Mur4 SINE Alu 1 130 -20 4 720 707 282 115 14 chr11 17820271 17820620 -104023236 + L1MA4 LINE L1 5531 5914 -386 4 720 256 256 156 0 chr11 17820763 17820853 -104023003 - B3 SINE B2 -11 205 102 4 720 22 0 0 0 chr11 17820900 17820922 -104022934 + AT_rich Low_complexity Low_complexity 1 22 0 4 720 382 317 28 35 chr11 17820990 17821134 -104022722 - B4 SINE B4 -149 143 1 4 720 7396 204 65 63 chr11 17821451 17821764 -104022092 + Lx7 LINE L1 2549 2880 -3000 4 720 1228 54 0 0 chr11 17821764 17821911 -104021945 + B1_Mm SINE Alu 1 147 0 4 720 7396 204 65 63 chr11 17821911 17823998 -104019858 + Lx7 LINE L1 2881 4954 -926 4 720 1281 216 132 40 chr11 17823995 17824610 -104019246 + Lx7 LINE L1 5354 6011 -1685 4 720 1148 208 61 49 chr11 17824614 17824877 -104018979 - ORR1B2 LTR MaLR 0 367 102 4 720 1549 218 27 3 chr11 17824886 17825259 -104018597 - L1_Mur3 LINE L1 -1251 4629 4248 4 720 580 122 0 10 chr11 17825259 17825358 -104018498 - ORR1B2 LTR MaLR -296 98 1 4 720 256 336 30 0 chr11 17825405 17825536 -104018320 + Lx7 LINE L1 6064 6198 -1498 4 11 529 307 125 15 chr11 17825540 17825947 -104017909 - Tigger6a DNA MER2_type -469 614 154 4 721 665 22 0 0 chr11 17826256 17826345 -104017511 + L1Md_F3 LINE L1 6479 6567 -17 4 721 207 0 0 0 chr11 17826355 17826378 -104017478 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 4 721 1814 256 50 4 chr11 17826422 17826909 -104016947 - MT2A LTR ERVL -7 594 1 4 721 677 269 92 10 chr11 17827234 17827429 -104016427 + MTE-int LTR MaLR 216 426 -1154 4 721 1673 208 76 51 chr11 17827507 17827978 -104015878 + RLTR16 LTR ERVK 11 493 -12 4 721 1657 279 136 24 chr11 17828016 17828632 -104015224 + MTE-int LTR MaLR 571 1255 -325 4 721 230 161 45 61 chr11 17828742 17828808 -104015048 + RCHARR1 DNA MER1_type 335 399 -575 4 721 578 212 159 62 chr11 17828796 17829053 -104014803 + RCHARR1 DNA MER1_type 680 961 -13 4 721 214 362 53 11 chr11 17829993 17830088 -104013768 + MIRb SINE MIR 57 155 -113 4 721 5227 175 40 14 chr11 17830100 17831375 -104012481 + L1_Mus1 LINE L1 98 1306 -5418 4 721 22262 97 14 3 chr11 17831373 17836186 -104007670 + L1_Mus1 LINE L1 1697 6555 -12 4 721 863 129 97 0 chr11 17836665 17836851 -104007005 - Lx2B LINE L1 -4 6996 6793 4 721 2797 159 25 25 chr11 17837052 17837239 -104006617 - RLTR11A LTR ERVK 0 528 341 4 721 4307 66 7 30 chr11 17837239 17837816 -104006040 + LTRIS2 LTR ERV1 1 564 0 4 721 2797 159 25 25 chr11 17837816 17838156 -104005700 - RLTR11A LTR ERVK -188 340 1 4 721 1183 55 7 0 chr11 17838554 17838700 -104005156 + B1_Mus2 SINE Alu 1 147 0 4 721 213 39 0 0 chr11 17838700 17838726 -104005130 + (A)n Simple_repeat Simple_repeat 1 26 0 4 721 528 243 14 7 chr11 17839369 17839514 -104004342 + B1F1 SINE Alu 1 146 -3 4 721 252 100 0 0 chr11 17840866 17840906 -104002950 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 721 360 0 0 0 chr11 17842378 17842418 -104001438 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 721 341 270 0 59 chr11 17842491 17842660 -104001196 + L1M2 LINE L1 2890 3048 -3092 4 721 1668 274 142 42 chr11 17842664 17844328 -103999528 + L1M2 LINE L1 3621 5436 -444 4 721 336 24 0 0 chr11 17844375 17844416 -103999440 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 721 258 202 68 45 chr11 17844537 17844625 -103999231 + L1M2 LINE L1 5693 5782 -518 4 721 589 189 22 84 chr11 17845011 17845190 -103998666 - RMER10B LTR ERVL -48 350 183 4 721 929 139 202 5 chr11 17848560 17848748 -103995108 + URR1B DNA MER1_type 1 225 0 4 721 1598 41 0 5 chr11 17849568 17849762 -103994094 + B2_Mm1t SINE B2 1 193 0 4 721 1133 74 14 0 chr11 17849793 17849941 -103993915 + B1_Mur4 SINE Alu 1 150 0 4 721 221 0 0 33 chr11 17850125 17850155 -103993701 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 721 1105 43 65 0 chr11 17850158 17850296 -103993560 - B1_Mus2 SINE Alu 0 147 1 4 721 435 260 113 33 chr11 17850663 17850814 -103993042 + RSINE1 SINE B4 3 165 0 4 721 255 327 96 48 chr11 17851046 17851213 -103992643 - MIRc SINE MIR -71 197 23 4 721 949 297 82 35 chr11 17854318 17854772 -103989084 - RMER5 LTR ERV1 0 534 60 4 721 243 342 0 0 chr11 17854816 17854892 -103988964 - PB1D10 SINE Alu -20 97 22 4 721 357 262 58 7 chr11 17855039 17855191 -103988665 + L1M5 LINE L1 4428 4589 -1557 4 721 371 270 8 57 chr11 17855514 17855636 -103988220 + PB1D10 SINE Alu 1 116 -1 4 721 26 50 0 0 chr11 17855773 17855813 -103988043 + AT_rich Low_complexity Low_complexity 1 40 0 4 721 241 242 16 16 chr11 17855842 17855905 -103987951 - RMER6B LTR ERVK -31 430 368 4 721 1342 198 154 19 chr11 17856631 17856950 -103986906 - MTD LTR MaLR -8 411 50 4 721 1093 261 118 26 chr11 17857025 17857369 -103986487 + MTE2b LTR MaLR 1 375 -4 4 721 205 51 51 0 chr11 17857370 17857409 -103986447 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 4 721 316 312 37 67 chr11 17857497 17857631 -103986225 - MTEa LTR MaLR -11 368 239 4 721 313 296 0 3 chr11 17857694 17857775 -103986081 - MTEa LTR MaLR -279 91 12 4 721 1021 129 14 152 chr11 17857851 17857926 -103985930 - ORR1B1 LTR MaLR 0 394 350 4 721 1242 27 0 7 chr11 17857926 17858073 -103985783 - B1_Mm SINE Alu 0 147 2 4 721 1021 129 14 152 chr11 17858073 17858207 -103985649 - ORR1B1 LTR MaLR -45 349 214 4 721 4182 201 116 87 chr11 17858199 17858413 -103985443 - ORR1B1-int LTR MaLR -197 1312 1128 4 721 1153 75 0 0 chr11 17858413 17858560 -103985296 + B1_Mus1 SINE Alu 1 147 -1 4 721 180 0 0 0 chr11 17858560 17858580 -103985276 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 721 4182 201 116 87 chr11 17858580 17859615 -103984241 - ORR1B1-int LTR MaLR -382 1127 27 4 721 349 287 37 0 chr11 17859527 17859635 -103984221 + MTEb LTR MaLR 268 379 0 4 721 581 305 46 33 chr11 17859717 17859958 -103983898 + ORR1E LTR MaLR 7 250 -109 4 721 1053 287 42 108 chr11 17860422 17860696 -103983160 - RLTR20B3 LTR ERVK 0 578 332 4 721 2965 75 0 13 chr11 17860696 17861089 -103982767 - Lx3_Mus LINE L1 -2 7007 6620 4 721 1053 273 36 93 chr11 17861089 17861438 -103982418 - RLTR20B3 LTR ERVK -224 353 1 4 721 1193 229 124 21 chr11 17861568 17861907 -103981949 + ORR1D1 LTR MaLR 1 374 0 4 721 6025 83 7 59 chr11 17861957 17863708 -103980148 + L1VL2 LINE L1 67 1714 -1901 4 721 31435 77 2 0 chr11 17863708 17869157 -103974699 + L1Md_F2 LINE L1 127 5586 -297 4 721 8175 44 1 0 chr11 17869157 17870151 -103973705 + L1Md_F2 LINE L1 5587 6581 -1 4 721 7850 97 13 9 chr11 17870151 17871419 -103972437 + L1VL2 LINE L1 1710 2983 -632 4 721 495 276 43 68 chr11 17871780 17871943 -103971913 - RSINE1 SINE B4 0 165 7 4 721 3991 57 2 64 chr11 17873023 17873569 -103970287 - LTRIS3 LTR ERV1 0 512 1 4 721 192 160 41 32 chr11 17874959 17875082 -103968774 + (TA)n Simple_repeat Simple_repeat 2 125 0 4 721 1675 21 5 0 chr11 17875354 17875546 -103968310 + B2_Mm1t SINE B2 1 193 0 4 721 312 27 0 0 chr11 17875546 17875583 -103968273 + (A)n Simple_repeat Simple_repeat 1 37 0 4 721 3521 214 114 17 chr11 17875593 17876026 -103967830 - RLTR25A LTR ERVK 0 1028 507 4 721 450 0 0 0 chr11 17876026 17876076 -103967780 + (TAA)n Simple_repeat Simple_repeat 2 51 0 4 721 3521 158 60 17 chr11 17876076 17876248 -103967608 - RLTR25A LTR ERVK -597 506 324 4 721 2406 71 6 3 chr11 17876248 17876571 -103967285 - L1_Mus3 LINE L1 -6 6632 6309 4 721 3521 158 60 17 chr11 17876571 17876876 -103966980 - RLTR25A LTR ERVK -780 323 2 4 721 528 318 0 0 chr11 17877612 17877741 -103966115 + B1F SINE Alu 13 141 -8 4 721 189 0 0 0 chr11 17877780 17877801 -103966055 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 4 721 485 0 33 0 chr11 17877803 17877863 -103965993 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 4 721 1162 82 0 0 chr11 17877869 17878015 -103965841 - B1_Mus2 SINE Alu 0 147 2 4 721 226 347 46 46 chr11 17878380 17878531 -103965325 + MER5A DNA MER1_type 15 165 -24 4 721 1171 37 0 0 chr11 17879044 17879180 -103964676 + B1_Mus1 SINE Alu 3 138 -10 4 721 261 0 0 0 chr11 17879180 17879209 -103964647 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 721 591 257 97 32 chr11 17880665 17880850 -103963006 + B3A SINE B2 2 198 0 4 721 21 0 0 0 chr11 17880852 17880873 -103962983 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 267 181 0 0 chr11 17880878 17880950 -103962906 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 721 250 293 173 48 chr11 17881023 17881127 -103962729 - B3A SINE B2 -16 182 66 4 721 29 47 0 0 chr11 17881152 17881195 -103962661 + AT_rich Low_complexity Low_complexity 1 43 0 4 721 578 230 159 6 chr11 17881460 17881526 -103962330 + ID_B1 SINE B4 5 104 -120 4 721 256 193 81 199 chr11 17881526 17881662 -103962194 + PB1D7 SINE Alu 1 120 0 5 721 742 229 7 0 chr11 17881968 17882121 -103961735 - B3 SINE B2 -62 154 1 5 721 28 48 0 0 chr11 17882215 17882257 -103961599 + AT_rich Low_complexity Low_complexity 1 42 0 5 721 1344 234 124 6 chr11 17882318 17882649 -103961207 - ORR1D1 LTR MaLR -2 372 3 5 721 2241 205 91 12 chr11 17882651 17883135 -103960721 - ORR1D1-int LTR MaLR 0 1370 849 5 721 2545 102 143 11 chr11 17883140 17883595 -103960261 - RLTR47_MM LTR ERV1 -13 519 5 5 721 1316 268 24 27 chr11 17883582 17883920 -103959936 - ORR1D1-int LTR MaLR -510 860 524 5 721 352 243 0 0 chr11 17883940 17884014 -103959842 - ORR1D1 LTR MaLR -108 266 193 5 721 1207 211 132 7 chr11 17883992 17884273 -103959583 + ORR1D1 LTR MaLR 59 374 0 5 721 929 236 9 39 chr11 17884273 17884502 -103959354 + ORR1D1-int LTR MaLR 1 222 -1148 5 721 316 214 18 0 chr11 17884506 17884562 -103959294 - ORR1D1 LTR MaLR -310 64 8 5 721 672 298 80 33 chr11 17884639 17884941 -103958915 + ORR1D2 LTR MaLR 17 332 -38 5 721 1119 102 90 0 chr11 17884959 17885125 -103958731 + B2_Mm2 SINE B2 1 181 -14 5 721 304 132 7 37 chr11 17885153 17885215 -103958641 + B2_Mm2 SINE B2 47 109 -107 5 721 423 0 0 0 chr11 17885227 17885274 -103958582 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 5 721 874 335 109 5 chr11 17885438 17886006 -103957850 - Lx8 LINE L1 -3 7470 6844 5 721 663 309 43 14 chr11 17886139 17886270 -103957586 - Lx8 LINE L1 -942 6531 6395 5 721 2641 64 214 3 chr11 17886270 17886662 -103957194 + MT2C_Mm LTR ERVL 1 475 0 5 721 663 309 43 14 chr11 17886662 17886878 -103956978 - Lx8 LINE L1 -1079 6394 6174 5 721 393 252 25 83 chr11 17886918 17887039 -103956817 - B1F2 SINE Alu -15 134 21 5 721 2498 104 63 12 chr11 17887250 17887649 -103956207 - RMER16 LTR ERVK 0 533 115 5 721 329 277 130 7 chr11 17888671 17888809 -103955047 + MIRb SINE MIR 102 256 -12 5 721 1022 310 79 17 chr11 17888922 17889017 -103954839 + Tigger6a DNA MER2_type 22 119 -964 5 721 2946 35 3 0 chr11 17889017 17889362 -103954494 - ORR1A0 LTR MaLR 0 346 1 5 721 1022 310 79 17 chr11 17889362 17889670 -103954186 + Tigger6a DNA MER2_type 120 450 -633 5 721 500 223 0 0 chr11 17889686 17889789 -103954067 - Lx8 LINE L1 -132 7341 7239 5 721 24 32 0 0 chr11 17890327 17890358 -103953498 + AT_rich Low_complexity Low_complexity 1 31 0 5 721 21 36 0 0 chr11 17890571 17890599 -103953257 + AT_rich Low_complexity Low_complexity 1 28 0 5 721 421 137 214 10 chr11 17890639 17890742 -103953114 + B1_Mus1 SINE Alu 25 148 0 5 721 206 32 32 0 chr11 17890783 17890814 -103953042 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 721 258 81 0 0 chr11 17891010 17891047 -103952809 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 721 279 0 0 0 chr11 17891292 17891323 -103952533 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 721 772 281 102 26 chr11 17891451 17891842 -103952014 - Lx8 LINE L1 -148 7325 6905 5 721 791 186 19 0 chr11 17892031 17892192 -103951664 + URR1B DNA MER1_type 58 221 -4 5 721 266 235 20 0 chr11 17892923 17892974 -103950882 + ID4_ SINE ID 2 53 -30 5 721 705 203 58 0 chr11 17893088 17893226 -103950630 + B1_Mus2 SINE Alu 1 146 -1 5 721 23 54 0 0 chr11 17893227 17893264 -103950592 + AT_rich Low_complexity Low_complexity 1 37 0 5 721 1605 21 16 0 chr11 17893852 17894039 -103949817 - B2_Mm1a SINE B2 -3 190 1 5 721 384 191 0 0 chr11 17894609 17894698 -103949158 + (CAGAC)n Simple_repeat Simple_repeat 1 89 0 5 721 268 299 30 0 chr11 17894809 17894876 -103948980 - PB1D10 SINE Alu -12 105 37 5 721 279 0 0 0 chr11 17895141 17895172 -103948684 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 721 1204 286 110 40 chr11 17895296 17896463 -103947393 + L1M3 LINE L1 3979 5226 -914 5 721 306 0 0 0 chr11 17896656 17896690 -103947166 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 721 340 319 146 45 chr11 17896693 17896884 -103946972 - L1M5 LINE L1 -2810 3336 3126 5 721 1997 80 118 0 chr11 17896884 17897173 -103946683 + ORR1A2 LTR MaLR 5 327 0 5 721 340 319 146 45 chr11 17897173 17897316 -103946540 - L1M5 LINE L1 -3021 3125 2968 5 721 254 318 52 14 chr11 17897426 17897538 -103946318 - B1F2 SINE Alu -6 114 1 5 721 396 0 0 0 chr11 17897918 17897962 -103945894 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 721 876 108 0 0 chr11 17897962 17898092 -103945764 + (TG)n Simple_repeat Simple_repeat 1 130 0 5 721 423 0 0 0 chr11 17899309 17899356 -103944500 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 721 244 261 14 0 chr11 17900007 17900076 -103943780 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 721 430 208 0 14 chr11 17900103 17900249 -103943607 + (CA)n Simple_repeat Simple_repeat 1 144 0 5 721 278 184 0 13 chr11 17900274 17900351 -103943505 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 721 264 22 43 22 chr11 17901476 17901522 -103942334 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 721 385 337 109 2 chr11 17901802 17901978 -103941878 + MIR SINE MIR 47 236 -32 5 721 231 343 108 59 chr11 17902414 17902600 -103941256 + MLT1D LTR MaLR 160 354 -151 5 721 269 210 48 16 chr11 17902609 17902672 -103941184 - MTE2a LTR MaLR -25 354 290 5 721 222 117 32 32 chr11 17902780 17902842 -103941014 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 5 721 203 225 12 48 chr11 17903951 17904035 -103939821 + (TTTG)n Simple_repeat Simple_repeat 1 81 0 5 721 260 226 30 142 chr11 17904036 17904170 -103939686 - PB1D9 SINE Alu -1 119 1 5 721 486 0 0 0 chr11 17904562 17904616 -103939240 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 721 195 69 0 0 chr11 17904754 17904783 -103939073 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 721 351 243 106 42 chr11 17905158 17905347 -103938509 + L1MC4 LINE L1 7584 7784 -258 5 721 5120 62 12 5 chr11 17905398 17906063 -103937793 - L1Md_F2 LINE L1 -2 6580 5911 5 721 312 327 172 23 chr11 17906168 17906378 -103937478 - B3A SINE B2 0 216 3 5 721 7563 43 3 0 chr11 17906491 17907403 -103936453 + L1Md_F2 LINE L1 5668 6582 0 5 721 362 316 45 6 chr11 17907512 17907690 -103936166 + MER112 DNA MER1_type 1 185 -76 5 721 233 119 0 23 chr11 17908105 17908148 -103935708 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 5 721 269 292 0 0 chr11 17908166 17908238 -103935618 - PB1D10 SINE Alu -1 116 45 5 721 1501 69 123 8 chr11 17908698 17908933 -103934923 + L1_Mus4 LINE L1 6374 6635 -1 5 721 250 143 13 13 chr11 17908953 17909031 -103934825 + A-rich Low_complexity Low_complexity 1 78 0 5 721 968 217 14 14 chr11 17909433 17909648 -103934208 - B3 SINE B2 0 216 2 5 721 566 204 70 42 chr11 17910792 17910935 -103932921 + B1_Mur1 SINE Alu 1 147 -2 5 721 229 231 15 30 chr11 17911042 17911109 -103932747 + CT-rich Low_complexity Low_complexity 2 67 0 5 721 29 28 0 0 chr11 17912814 17912850 -103931006 + AT_rich Low_complexity Low_complexity 1 36 0 5 721 25 0 0 0 chr11 17913684 17913709 -103930147 + AT_rich Low_complexity Low_complexity 1 25 0 5 721 320 368 71 8 chr11 17913743 17913869 -103929987 + B4A SINE B4 14 147 -145 5 721 578 60 0 12 chr11 17916078 17916162 -103927694 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 721 381 265 47 4 chr11 17916338 17916450 -103927406 - PB1D10 SINE Alu -23 126 3 5 721 265 268 47 47 chr11 17916602 17916688 -103927168 + B1F SINE Alu 13 98 -51 5 721 342 274 136 26 chr11 17916890 17917081 -103926775 - MIR SINE MIR 0 262 51 5 721 651 329 13 27 chr11 17917301 17917526 -103926330 - B4A SINE B4 -67 225 4 5 721 1707 140 19 160 chr11 17918437 17918592 -103925264 - RLTR15 LTR ERVK 0 359 257 5 721 1109 86 0 0 chr11 17918592 17918731 -103925125 - B1_Mus2 SINE Alu -7 140 2 5 721 1707 140 19 160 chr11 17918731 17918993 -103924863 - RLTR15 LTR ERVK -103 256 1 5 721 342 337 39 6 chr11 17919197 17919379 -103924477 + MER53 DNA hAT 2 189 -4 5 721 230 390 9 9 chr11 17921298 17921404 -103922452 + MIR SINE MIR 12 117 -145 5 721 231 295 12 25 chr11 17922774 17922854 -103921002 + ID4_ SINE ID 1 79 -4 5 721 252 0 0 0 chr11 17922857 17922885 -103920971 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 721 6034 82 68 0 chr11 17923130 17924026 -103919830 + L1_Mus4 LINE L1 5674 6630 -6 5 721 496 268 131 0 chr11 17924267 17924435 -103919421 + Lx8 LINE L1 6935 7124 -349 5 721 452 259 38 16 chr11 17924445 17924591 -103919265 + B3A SINE B2 1 148 -47 5 721 552 15 0 0 chr11 17924591 17924656 -103919200 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 721 436 263 63 58 chr11 17924656 17924699 -103919157 + B2_Mm2 SINE B2 149 191 -4 5 721 698 262 5 53 chr11 17924705 17924911 -103918945 + B3A SINE B2 3 198 0 5 721 778 269 67 29 chr11 17924940 17925254 -103918602 + Lx8 LINE L1 7148 7473 0 5 721 200 229 16 0 chr11 17925571 17925632 -103918224 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 721 363 44 0 0 chr11 17925664 17925709 -103918147 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 721 283 263 0 88 chr11 17926165 17926290 -103917566 + Lx9 LINE L1 7061 7174 -470 5 721 198 0 0 0 chr11 17926305 17926327 -103917529 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 721 366 252 0 0 chr11 17927167 17927266 -103916590 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 721 844 136 28 0 chr11 17928294 17928446 -103915410 + B2_Mm2 SINE B2 1 169 -47 5 721 606 63 0 0 chr11 17928448 17928527 -103915329 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 721 1611 234 54 3 chr11 17929030 17929399 -103914457 - MTD LTR MaLR -14 405 18 5 721 297 135 0 0 chr11 17930595 17930647 -103913209 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 721 183 286 158 42 chr11 17930817 17930912 -103912944 + L2a LINE L2 2844 2949 -470 5 721 180 354 103 14 chr11 17931024 17931170 -103912686 + L2a LINE L2 3268 3426 0 5 721 257 330 92 38 chr11 17931252 17931421 -103912435 + MIR SINE MIR 39 211 -51 5 721 222 399 49 7 chr11 17932688 17932832 -103911024 - MIRm SINE MIR -95 181 32 5 721 204 40 0 0 chr11 17934337 17934362 -103909494 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 721 996 317 4 0 chr11 17935088 17935350 -103908506 + MTE2b LTR MaLR 18 280 -99 5 721 2180 284 47 13 chr11 17935350 17935966 -103907890 + MTE2b-int LTR MaLR 770 1406 -174 5 721 634 267 6 24 chr11 17936389 17936554 -103907302 + MTE2b-int LTR MaLR 1413 1574 -6 5 721 1070 298 30 8 chr11 17936560 17936929 -103906927 + MTE2b LTR MaLR 1 377 -2 5 721 392 266 0 0 chr11 17937351 17937430 -103906426 + ID4_ SINE ID 2 80 -3 5 721 1063 233 20 0 chr11 17938918 17939120 -103904736 + B3 SINE B2 6 211 -5 5 721 1433 220 108 26 chr11 17939563 17939746 -103904110 + MTD LTR MaLR 1 201 -218 5 721 2917 109 0 24 chr11 17939746 17940196 -103903660 + L1_Mus4 LINE L1 6192 6630 -6 6 721 1232 50 6 0 chr11 17940196 17940356 -103903500 + (GGAGAA)n Simple_repeat Simple_repeat 3 163 0 6 721 1433 220 108 26 chr11 17940356 17940558 -103903298 + MTD LTR MaLR 202 418 -1 5 721 188 67 33 0 chr11 17941580 17941610 -103902246 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 721 22 35 0 0 chr11 17942161 17942190 -103901666 + AT_rich Low_complexity Low_complexity 1 29 0 6 721 308 339 0 0 chr11 17942795 17942913 -103900943 - Lx9 LINE L1 -177 7467 7350 6 721 2335 289 35 18 chr11 17943120 17943886 -103899970 + Lx7 LINE L1 6578 7356 -340 6 721 590 121 60 5 chr11 17943886 17944109 -103899747 + (TA)n Simple_repeat Simple_repeat 1 235 0 6 721 241 96 77 0 chr11 17944135 17944187 -103899669 + (CATA)n Simple_repeat Simple_repeat 3 58 0 6 721 180 77 0 0 chr11 17944226 17944252 -103899604 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 721 677 251 173 62 chr11 17944450 17944837 -103899019 - Lx9 LINE L1 -1095 6549 6120 6 721 552 210 122 32 chr11 17944929 17945175 -103898681 + Lx9 LINE L1 7370 7637 -7 6 721 246 320 82 45 chr11 17945239 17945373 -103898483 + RSINE1 SINE B4 25 163 -2 6 721 378 260 0 0 chr11 17945378 17945505 -103898351 + (CA)n Simple_repeat Simple_repeat 2 128 0 6 721 36465 47 0 3 chr11 17946018 17952725 -103891131 - L1Md_T LINE L1 0 6585 1 6 721 209 89 0 151 chr11 17953104 17953157 -103890699 - L2 LINE L2 -870 2549 2505 6 721 467 335 60 19 chr11 17954924 17955341 -103888515 - L1MA4 LINE L1 -391 5909 5476 6 721 28 48 0 0 chr11 17955344 17955386 -103888470 + AT_rich Low_complexity Low_complexity 1 42 0 6 721 1601 211 112 54 chr11 17955389 17955889 -103887967 - Lx2B LINE L1 -1 6999 6471 6 721 407 244 16 50 chr11 17955895 17956016 -103887840 - Lx4B LINE L1 -804 6254 6138 6 721 3433 115 39 8 chr11 17956001 17956599 -103887257 + L1_Mur2 LINE L1 4044 4659 -1218 6 721 230 343 22 7 chr11 17956681 17956816 -103887040 - L1_Rod LINE L1 -391 5456 5320 6 90 260 53 26 0 chr11 17956834 17956872 -103886984 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 6 722 518 319 0 94 chr11 17956872 17957052 -103886804 - RSINE1 SINE B4 0 165 3 6 722 592 296 76 23 chr11 17957077 17957276 -103886580 - L1MA4 LINE L1 -772 5371 5156 6 722 230 0 33 0 chr11 17957276 17957306 -103886550 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 722 592 296 76 23 chr11 17957306 17957632 -103886224 - L1MA4 LINE L1 -988 5155 4819 6 722 425 257 129 9 chr11 17957635 17957864 -103885992 - L1MA4 LINE L1 -1865 4278 4025 6 722 2694 136 58 56 chr11 17957864 17958187 -103885669 - RLTR11A LTR ERVK -29 499 187 6 722 567 0 0 0 chr11 17958187 17958250 -103885606 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 6 722 1121 50 0 54 chr11 17958256 17958405 -103885451 - B1_Mus1 SINE Alu -6 142 2 6 722 2694 136 58 56 chr11 17958405 17958572 -103885284 - RLTR11A LTR ERVK -342 186 1 6 722 658 281 10 10 chr11 17958572 17958810 -103885046 - L1MA4 LINE L1 -1852 3995 3755 6 722 311 169 17 17 chr11 17958811 17958871 -103884985 + ORR1B2 LTR MaLR 1 60 -307 6 722 387 89 0 0 chr11 17958903 17958959 -103884897 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 722 1468 284 42 13 chr11 17958968 17959417 -103884439 - MT2A LTR ERVL -71 462 1 6 722 1075 210 120 29 chr11 17959548 17959832 -103884024 + RLTR11A LTR ERVK 1 295 -265 6 722 294 206 0 0 chr11 17959833 17959906 -103883950 + GA-rich Low_complexity Low_complexity 2 74 0 6 722 1657 156 19 31 chr11 17959906 17960231 -103883625 + RLTR11A LTR ERVK 208 528 0 6 722 282 316 0 12 chr11 17960434 17960453 -103883403 + ID SINE ID 64 81 -143 6 722 303 321 0 0 chr11 17960453 17960534 -103883322 + PB1D10 SINE Alu 1 81 -36 6 722 186 43 0 0 chr11 17960982 17961005 -103882851 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 722 477 34 0 0 chr11 17961372 17961431 -103882425 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 722 204 40 0 0 chr11 17961436 17961461 -103882395 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 722 201 178 0 0 chr11 17964409 17964454 -103879402 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 722 367 339 24 16 chr11 17964455 17964578 -103879278 - ID_B1 SINE B4 -11 213 90 6 722 220 363 68 37 chr11 17965817 17965980 -103877876 - MIRb SINE MIR -1 267 100 6 722 698 0 12 0 chr11 17967196 17967278 -103876578 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 6 722 699 12 0 0 chr11 17969242 17969322 -103874534 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 722 596 320 70 32 chr11 17971303 17971433 -103872423 + Kanga1 DNA Tc2 28 168 -1577 6 722 192 97 0 0 chr11 17971433 17971464 -103872392 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 722 596 320 70 32 chr11 17971464 17971646 -103872210 + Kanga1 DNA Tc2 169 352 -1393 6 722 1520 217 41 47 chr11 17972228 17972590 -103871266 + ORR1D2 LTR MaLR 3 362 -8 6 722 1074 44 0 0 chr11 17972619 17972755 -103871101 + (TG)n Simple_repeat Simple_repeat 1 136 0 6 722 234 245 19 38 chr11 17973183 17973289 -103870567 + RMER17A2 LTR ERVK 272 375 -531 6 722 378 61 0 0 chr11 17973290 17973339 -103870517 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 722 2734 151 40 4 chr11 17973430 17973908 -103869948 - Lx LINE L1 -3 6651 6157 6 722 29 28 0 0 chr11 17975316 17975352 -103868504 + AT_rich Low_complexity Low_complexity 1 36 0 6 722 4162 190 35 16 chr11 17977605 17978411 -103865445 - Lx5 LINE L1 -9 7041 6221 6 722 36460 41 0 3 chr11 17978491 17984630 -103859226 - L1Md_T LINE L1 0 6585 366 6 722 2085 258 11 30 chr11 17984653 17985177 -103858679 + RLTR17 LTR ERVK 98 611 -81 6 722 3063 67 0 13 chr11 17985904 17986300 -103857556 + L1_Mus1 LINE L1 6177 6567 0 6 722 183 129 0 0 chr11 17986302 17986333 -103857523 + (GAA)n Simple_repeat Simple_repeat 1 31 0 6 722 756 284 58 29 chr11 17987406 17987579 -103856277 + L1M3 LINE L1 4812 4985 -1155 6 722 558 227 123 89 chr11 17987579 17987748 -103856108 + B3 SINE B2 2 166 -50 6 722 423 0 0 0 chr11 17987748 17987795 -103856061 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 722 558 227 123 89 chr11 17987795 17987828 -103856028 + B3 SINE B2 167 211 -5 6 722 756 284 58 29 chr11 17987828 17988034 -103855822 + L1M3 LINE L1 4986 5202 -938 6 722 270 259 47 0 chr11 17989089 17989174 -103854682 + L1M3 LINE L1 5193 5281 -859 6 722 953 122 40 0 chr11 17989176 17989324 -103854532 - ORR1A4 LTR MaLR -1 328 175 6 722 982 283 6 15 chr11 17989324 17989665 -103854191 - MuRRS4-int LTR ERV1 -1166 3897 3560 6 722 336 293 19 16 chr11 17990031 17990175 -103853681 - MuLV-int LTR ERV1 -3149 4452 4306 6 722 7585 128 14 0 chr11 17990181 17991427 -103852429 - L1_Mus3 LINE L1 -79 5804 4541 6 722 5703 96 4 1 chr11 17991429 17992219 -103851637 + L1_Mus3 LINE L1 5843 6634 -4 6 722 1516 318 50 41 chr11 17992230 17993415 -103850441 - MuRRS4-int LTR ERV1 -3664 3892 1944 6 722 863 230 43 54 chr11 17993421 17993679 -103850177 - RMER13B LTR ERVK -262 646 392 6 722 796 340 58 45 chr11 17993803 17994671 -103849185 - MuRRS4-int LTR ERV1 -4395 3161 2250 6 722 3367 130 25 139 chr11 17994731 17995560 -103848296 - RMER17A LTR ERVK -16 735 1 6 722 1114 210 169 38 chr11 17995711 17996114 -103847742 - RMER17B LTR ERVK -574 384 1 6 722 5675 159 17 13 chr11 17996685 17997797 -103846059 - Lx LINE L1 0 6654 5538 6 722 12913 97 32 23 chr11 17997844 17999998 -103843858 - MusHAL1 LINE L1 -281 2431 259 6 722 4872 121 12 0 chr11 18000000 18000906 -103842950 - L1VL4 LINE L1 -2456 1103 188 1 722 1319 244 82 11 chr11 18001173 18001526 -103842330 + MTE2b LTR MaLR 2 379 0 2 722 425 323 76 11 chr11 18001716 18002122 -103841734 + L1MA4 LINE L1 5447 5886 -414 3 722 206 200 48 48 chr11 18004016 18004079 -103839777 - L4 LINE RTE -206 1823 1761 4 722 464 291 108 56 chr11 18004484 18004553 -103839303 - MER33 DNA MER1_type -9 315 250 5 722 829 182 42 0 chr11 18004553 18004696 -103839160 + B1_Mur1 SINE Alu 1 149 0 6 722 464 291 108 56 chr11 18004696 18004895 -103838961 - MER33 DNA MER1_type -75 249 33 5 722 190 275 0 0 chr11 18005410 18005450 -103838406 + MIR3 SINE MIR 120 159 -49 7 722 3072 42 5 33 chr11 18006605 18007002 -103836854 - RLTR10 LTR ERVK -4 386 1 8 722 16454 18 1 0 chr11 18007004 18008947 -103834909 - RLTR10-int LTR ERVK -3 1984 41 8 722 3072 42 5 33 chr11 18008963 18009360 -103834496 - RLTR10 LTR ERVK -4 386 1 8 722 592 331 7 7 chr11 18009886 18010032 -103833824 + RSINE1 SINE B4 11 156 -9 9 722 4278 140 25 1 chr11 18011260 18012191 -103831665 + Lx2 LINE L1 5009 5977 -1020 1 722 255 125 0 0 chr11 18012366 18012406 -103831450 + Lx2 LINE L1 5985 6024 -973 1 722 384 380 40 23 chr11 18012760 18012935 -103830921 - B3 SINE B2 -35 181 4 1 722 188 236 220 22 chr11 18013179 18013270 -103830586 + MIR SINE MIR 19 127 -81 1 722 190 121 0 83 chr11 18013647 18013683 -103830173 - MIRm SINE MIR -106 170 138 1 722 414 0 0 0 chr11 18013778 18013824 -103830032 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 722 3406 151 32 23 chr11 18016631 18017307 -103826549 + RMER6A LTR ERVK 1 756 0 1 722 231 363 38 29 chr11 18017908 18018013 -103825843 + MLT1H LTR MaLR 24 129 -376 1 722 392 330 143 30 chr11 18018231 18018434 -103825422 + MLT1H LTR MaLR 94 319 -230 1 722 21 0 0 0 chr11 18019832 18019853 -103824003 + AT_rich Low_complexity Low_complexity 1 21 0 1 722 570 292 62 102 chr11 18020171 18021159 -103822697 - L1MA5 LINE L1 -337 5963 4978 1 722 1061 103 7 0 chr11 18021159 18021305 -103822551 - B1_Mus2 SINE Alu 0 147 1 1 722 570 271 40 137 chr11 18021305 18021433 -103822423 - L1MA5 LINE L1 -1166 4977 4873 1 722 2889 112 0 69 chr11 18021453 18021914 -103821942 + RLTR23 LTR ERV1 1 429 -1 2 722 629 273 26 105 chr11 18021914 18022135 -103821721 - B3 SINE B2 -7 209 7 2 722 211 224 70 56 chr11 18023353 18023424 -103820432 + MIRb SINE MIR 180 251 -17 2 722 225 119 0 0 chr11 18023933 18023975 -103819881 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 722 326 289 34 88 chr11 18024085 18024233 -103819623 - MLT1B LTR MaLR -25 365 226 2 722 414 248 109 17 chr11 18025495 18025614 -103818242 + MER20 DNA MER1_type 2 131 -88 2 722 295 236 34 109 chr11 18026602 18026721 -103817135 + PB1D10 SINE Alu 1 110 -7 2 722 222 339 43 49 chr11 18026737 18026882 -103816974 + MIR3 SINE MIR 43 180 -28 2 722 1003 67 0 7 chr11 18026911 18027046 -103816810 - B1_Mus1 SINE Alu 0 148 15 2 722 21 0 0 0 chr11 18027167 18027188 -103816668 + AT_rich Low_complexity Low_complexity 1 21 0 2 722 461 206 36 73 chr11 18028890 18029000 -103814856 + LTR41 LTR ERVL 90 195 -573 3 722 1631 151 62 77 chr11 18029015 18029417 -103814439 - L1_Mur2 LINE L1 -1467 4410 4015 3 722 269 269 232 46 chr11 18029469 18029753 -103814103 + LTR41 LTR ERVL 428 764 -4 3 722 1159 61 0 20 chr11 18030010 18030160 -103813696 - B1_Mm SINE Alu 0 147 1 3 722 3217 162 24 57 chr11 18030495 18031210 -103812646 - L1_Mur2 LINE L1 -1475 4402 3712 3 722 708 264 43 9 chr11 18031217 18031427 -103812429 + Lx5 LINE L1 6520 6736 -314 3 722 543 16 0 0 chr11 18031433 18031497 -103812359 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 722 432 0 0 0 chr11 18031846 18031894 -103811962 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 722 1419 266 111 21 chr11 18031911 18032425 -103811431 - Lx8 LINE L1 -149 7324 6765 3 722 635 190 78 0 chr11 18032436 18032578 -103811278 - B3 SINE B2 0 216 64 3 722 7957 38 1 0 chr11 18032578 18033735 -103810121 - L1Md_F2 LINE L1 -1 6581 5424 3 722 394 231 0 0 chr11 18033744 18033822 -103810034 - B3 SINE B2 -138 78 1 3 722 883 287 52 40 chr11 18033823 18034172 -103809684 - Lx8 LINE L1 -694 6779 6427 3 722 2832 66 3 11 chr11 18034278 18034659 -103809197 + L1Md_F2 LINE L1 6193 6570 -12 4 722 393 319 90 37 chr11 18034931 18035120 -103808736 + MLT2B1 LTR ERVL 13 211 -343 4 722 374 130 32 32 chr11 18035160 18035255 -103808601 + CT-rich Low_complexity Low_complexity 2 96 0 4 722 570 302 58 135 chr11 18035260 18035646 -103808210 + MLT2B1 LTR ERVL 218 597 -4 4 722 275 258 8 0 chr11 18035705 18035833 -103808023 + (TG)n Simple_repeat Simple_repeat 1 129 0 4 722 21 0 0 0 chr11 18036096 18036117 -103807739 + AT_rich Low_complexity Low_complexity 1 21 0 4 722 225 0 0 0 chr11 18036543 18036568 -103807288 + (A)n Simple_repeat Simple_repeat 1 25 0 4 722 22 35 0 0 chr11 18037076 18037105 -103806751 + AT_rich Low_complexity Low_complexity 1 29 0 4 722 738 62 0 0 chr11 18037510 18037606 -103806250 + (TATG)n Simple_repeat Simple_repeat 4 99 0 4 722 329 351 83 33 chr11 18038198 18038382 -103805474 - B4A SINE B4 -98 194 3 4 722 183 80 0 0 chr11 18038465 18038490 -103805366 + (T)n Simple_repeat Simple_repeat 1 25 0 4 722 277 207 0 24 chr11 18039962 18040046 -103803810 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 722 21 36 0 0 chr11 18040056 18040084 -103803772 + AT_rich Low_complexity Low_complexity 1 28 0 5 722 286 123 17 17 chr11 18040108 18040166 -103803690 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 722 378 250 19 29 chr11 18040171 18040274 -103803582 - B3 SINE B2 0 216 115 5 722 270 134 14 29 chr11 18040284 18040353 -103803503 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 722 390 301 35 35 chr11 18040358 18040499 -103803357 - B3 SINE B2 0 216 76 5 722 234 0 0 0 chr11 18040512 18040538 -103803318 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 722 1960 302 101 23 chr11 18040569 18041410 -103802446 + Lx8 LINE L1 6211 7117 -356 5 722 450 0 0 0 chr11 18041411 18041461 -103802395 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 722 221 291 0 0 chr11 18042390 18042445 -103801411 + L3 LINE CR1 4428 4482 -7 5 722 323 348 77 84 chr11 18043162 18043460 -103800396 - ORR1E LTR MaLR 0 359 64 6 722 1240 27 7 0 chr11 18043981 18044127 -103799729 + B1_Mus2 SINE Alu 1 147 0 6 722 207 0 0 0 chr11 18044138 18044161 -103799695 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 722 431 260 30 0 chr11 18044404 18044504 -103799352 - MLT1H LTR MaLR -379 170 68 6 722 1255 41 0 0 chr11 18044704 18044851 -103799005 + B1_Mm SINE Alu 1 147 0 6 722 652 275 33 38 chr11 18046857 18047069 -103796787 + B3 SINE B2 1 211 -5 6 722 255 253 153 31 chr11 18049075 18049173 -103794683 + RMER15 LTR ERVL 422 531 -44 6 722 247 339 35 26 chr11 18049254 18049369 -103794487 + ORR1E LTR MaLR 53 168 -191 6 722 278 263 12 4 chr11 18049425 18049503 -103794353 + ORR1E LTR MaLR 266 364 -15 6 722 1341 58 0 0 chr11 18049882 18050055 -103793801 + L1Md_T LINE L1 6410 6582 0 6 722 506 57 14 0 chr11 18053573 18053643 -103790213 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 722 559 193 26 9 chr11 18053649 18053764 -103790092 - B1_Mur2 SINE Alu 0 149 33 7 722 201 158 53 0 chr11 18054091 18054148 -103789708 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 722 35 75 0 11 chr11 18054801 18054841 -103789015 + AT_rich Low_complexity Low_complexity 1 40 0 7 722 1448 43 0 11 chr11 18054841 18055028 -103788828 - L1Md_F3 LINE L1 -16 6568 6384 7 722 35 75 0 11 chr11 18055028 18055082 -103788774 + AT_rich Low_complexity Low_complexity 1 54 0 7 722 279 283 129 14 chr11 18055938 18056085 -103787771 - MER121 Unknown Unknown -103 309 146 7 722 586 264 32 19 chr11 18057339 18057497 -103786359 + RSINE1 SINE B4 3 162 -3 7 722 400 280 46 40 chr11 18058825 18059000 -103784856 - MER58A DNA MER1_type -35 189 14 7 722 3362 55 5 0 chr11 18059295 18059715 -103784141 + L1_Mus1 LINE L1 6146 6567 0 7 722 882 129 0 0 chr11 18059759 18059899 -103783957 + (TC)n Simple_repeat Simple_repeat 1 140 0 7 722 1380 169 0 52 chr11 18059908 18060196 -103783660 - Lx3B LINE L1 0 6973 6701 8 722 630 118 88 0 chr11 18060217 18060319 -103783537 - Lx3B LINE L1 -386 6587 6477 8 722 2132 148 11 17 chr11 18060291 18060764 -103783092 + Lx3B LINE L1 5699 6176 -824 8 722 2612 132 37 23 chr11 18060801 18061282 -103782574 + Lx3B LINE L1 5999 6486 -487 8 722 415 334 111 33 chr11 18062229 18062653 -103781203 - L1ME1 LINE L1 -288 5891 5435 8 722 358 286 56 29 chr11 18063764 18063925 -103779931 - MIRb SINE MIR -1 261 105 8 722 1165 68 7 0 chr11 18065490 18065637 -103778219 + B1_Mus1 SINE Alu 1 148 0 8 722 633 232 197 11 chr11 18065738 18066017 -103777839 + Lx9 LINE L1 7314 7644 0 8 722 467 317 91 5 chr11 18066927 18067114 -103776742 - B4 SINE B4 -86 206 4 8 722 388 338 7 73 chr11 18068386 18068458 -103775398 - RSINE1 SINE B4 -21 144 80 8 722 3356 194 106 91 chr11 18068458 18069347 -103774509 + RMER19B LTR ERVK 1 902 0 8 722 388 338 7 73 chr11 18069347 18069424 -103774432 - RSINE1 SINE B4 -86 79 5 8 722 204 274 12 110 chr11 18069617 18069699 -103774157 - MIR SINE MIR -69 193 120 9 722 441 270 26 35 chr11 18069863 18069978 -103773878 - B1F2 SINE Alu -35 114 1 9 722 589 319 23 96 chr11 18070007 18070267 -103773589 + B4 SINE B4 1 241 -51 9 722 1122 201 47 13 chr11 18070267 18070585 -103773271 - Lx2B LINE L1 -765 6235 5907 9 722 287 172 0 0 chr11 18070587 18070651 -103773205 + Lx2B LINE L1 6936 6999 -1 9 722 1248 225 94 33 chr11 18071903 18072298 -103771558 - MTD LTR MaLR 0 419 1 9 722 854 322 55 0 chr11 18072383 18072672 -103771184 + MER2 DNA MER2_type 10 314 -31 9 722 362 356 54 10 chr11 18073308 18073512 -103770344 - LTR16C LTR ERVL -2 487 275 9 722 373 296 94 65 chr11 18073720 18074154 -103769702 - Lx7 LINE L1 -333 7363 6917 9 722 10028 94 13 15 chr11 18074271 18075861 -103767995 - L1VL4 LINE L1 -224 3335 1750 9 722 2655 84 0 6 chr11 18075861 18076209 -103767647 - ORR1A1 LTR MaLR 0 346 1 1 722 2300 74 3 0 chr11 18076209 18076520 -103767336 - ORR1A1-int LTR MaLR 0 1792 1481 1 722 4278 99 26 24 chr11 18076519 18077222 -103766634 - ORR1A1-int LTR MaLR -1088 704 1 1 722 2398 89 29 12 chr11 18077222 18077562 -103766294 - ORR1A1 LTR MaLR 0 346 1 1 722 5974 80 10 5 chr11 18077562 18079091 -103764765 - L1VL4 LINE L1 -1805 1754 219 9 722 294 29 0 0 chr11 18079143 18079178 -103764678 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 722 192 40 0 0 chr11 18079178 18079202 -103764654 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 722 208 111 43 43 chr11 18079359 18079406 -103764450 + A-rich Low_complexity Low_complexity 5 51 0 1 722 329 282 92 23 chr11 18079416 18079634 -103764222 + Lx7 LINE L1 7447 7679 -17 1 722 341 75 0 19 chr11 18079686 18079740 -103764116 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 722 207 290 0 0 chr11 18079869 18079931 -103763925 + A-rich Low_complexity Low_complexity 1 62 0 1 722 347 327 6 0 chr11 18080034 18080095 -103763761 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 1 722 378 0 0 0 chr11 18080095 18080137 -103763719 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 722 347 327 6 0 chr11 18080137 18080231 -103763625 + (CATATA)n Simple_repeat Simple_repeat 6 99 0 1 722 2112 170 20 0 chr11 18080238 18080596 -103763260 + ORR1B2 LTR MaLR 3 367 0 1 722 5111 199 58 37 chr11 18080860 18082977 -103760879 + Lx6 LINE L1 503 2662 -3218 1 722 3401 135 12 7 chr11 18082995 18083011 -103760845 - L1_Mm LINE L1 -1014 4869 4855 1 722 1936 98 0 25 chr11 18083011 18083295 -103760561 - L1_Mus2 LINE L1 0 6566 6290 1 722 3401 135 12 7 chr11 18083295 18083876 -103759980 - L1_Mm LINE L1 -1029 4854 4269 1 722 5317 105 4 4 chr11 18083887 18084670 -103759186 - L1_Mus2 LINE L1 0 6566 5784 1 90 29049 122 7 11 chr11 18084678 18090633 -103753223 - L1_Mus1 LINE L1 -1 6569 553 1 723 322 227 0 0 chr11 18090650 18090725 -103753131 + Lx6 LINE L1 2651 2725 -3155 1 723 186 43 0 0 chr11 18090725 18090748 -103753108 + (T)n Simple_repeat Simple_repeat 1 23 0 1 723 26 0 0 0 chr11 18090863 18090889 -103752967 + AT_rich Low_complexity Low_complexity 1 26 0 1 723 638 268 84 7 chr11 18091381 18091535 -103752321 - ID_B1 SINE B4 -18 206 41 1 723 31313 62 20 4 chr11 18091664 18094268 -103749588 - L1Md_F2 LINE L1 0 6582 3985 1 723 3355 33 5 0 chr11 18094268 18094662 -103749194 - MTA_Mm LTR MaLR 0 396 1 1 723 31313 87 20 6 chr11 18094662 18098838 -103745018 - L1Md_F2 LINE L1 -1899 3984 98 1 723 1004 229 28 21 chr11 18098826 18099186 -103744670 - L1VL1 LINE L1 -6190 534 149 1 723 721 198 0 47 chr11 18099186 18099377 -103744479 + Lx6 LINE L1 2712 2893 -2987 1 723 589 204 61 68 chr11 18099451 18099598 -103744258 + B1_Mur4 SINE Alu 5 150 0 1 723 7819 174 51 199 chr11 18099600 18099670 -103744186 + Lx6 LINE L1 3153 3225 -2655 1 723 585 0 0 0 chr11 18099670 18099735 -103744121 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 723 7819 174 51 199 chr11 18099735 18101178 -103742678 + Lx6 LINE L1 3226 4163 -1717 1 723 4089 50 2 4 chr11 18101178 18101682 -103742174 + L1Md_F2 LINE L1 6080 6582 0 1 723 7819 217 82 147 chr11 18101682 18104865 -103738991 + Lx6 LINE L1 4164 7459 -1 1 723 492 278 169 27 chr11 18104893 18105189 -103738667 - Charlie1 DNA MER1_type -56 2725 2388 1 723 528 304 57 107 chr11 18105386 18105563 -103738293 + ID_B1 SINE B4 76 243 -49 1 723 203 154 0 49 chr11 18105574 18105615 -103738241 + A-rich Low_complexity Low_complexity 2 40 0 1 723 23 33 0 0 chr11 18105701 18105731 -103738125 + AT_rich Low_complexity Low_complexity 1 30 0 1 723 232 344 20 40 chr11 18105806 18105906 -103737950 - PB1D10 SINE Alu -7 110 13 1 723 405 0 0 0 chr11 18106224 18106269 -103737587 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 723 405 0 0 0 chr11 18107255 18107300 -103736556 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 723 998 255 143 3 chr11 18107768 18108138 -103735718 - Lx8 LINE L1 -179 7294 6873 1 723 544 130 144 8 chr11 18108327 18108459 -103735397 - Lx3C LINE L1 0 6976 6827 1 723 376 284 96 15 chr11 18110155 18110291 -103733565 + LTR16C LTR ERVL 271 417 -72 1 723 209 109 22 0 chr11 18111325 18111371 -103732485 + (TTTTTG)n Simple_repeat Simple_repeat 5 51 0 1 723 1142 68 7 0 chr11 18111371 18111517 -103732339 - B1_Mus1 SINE Alu 0 148 2 1 723 234 214 0 0 chr11 18112042 18112084 -103731772 - MTB_Mm LTR MaLR -365 42 1 1 723 312 301 120 5 chr11 18112750 18112950 -103730906 - MER113 DNA MER1_type -34 487 265 1 723 2088 41 48 15 chr11 18113592 18113844 -103730012 + L1Md_F2 LINE L1 6301 6565 -17 1 723 822 86 0 0 chr11 18113844 18113960 -103729896 + (GAA)n Simple_repeat Simple_repeat 2 117 0 1 723 2088 41 48 15 chr11 18113960 18113980 -103729876 + L1Md_F2 LINE L1 6566 6582 0 1 723 668 126 25 0 chr11 18114057 18114176 -103729680 - Lx3_Mus LINE L1 -1 7008 6887 1 723 302 160 0 74 chr11 18114961 18115015 -103728841 + HAL1N1_MD LINE L1 6446 6495 -78 1 723 1295 202 53 12 chr11 18115374 18115715 -103728141 + Lx9 LINE L1 7288 7642 -2 1 723 878 252 48 10 chr11 18115961 18116169 -103727687 - B3 SINE B2 0 216 1 1 723 290 317 15 91 chr11 18116350 18116408 -103727448 - ID_B1 SINE B4 -21 203 82 1 723 291 214 14 54 chr11 18116408 18116482 -103727374 - PB1D10 SINE Alu -46 71 1 1 723 1147 48 0 7 chr11 18116497 18116644 -103727212 + B1_Mus1 SINE Alu 2 147 -1 1 723 351 0 0 0 chr11 18116657 18116696 -103727160 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 723 25 0 0 0 chr11 18117728 18117753 -103726103 + AT_rich Low_complexity Low_complexity 1 25 0 1 723 476 313 103 0 chr11 18118307 18118502 -103725354 + MER2 DNA MER2_type 124 338 -7 1 723 313 75 38 0 chr11 18118518 18118571 -103725285 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 723 312 164 0 0 chr11 18118576 18118643 -103725213 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 723 1311 301 108 43 chr11 18118908 18120268 -103723588 - L1MB1 LINE L1 -180 6184 4708 1 723 26445 111 55 9 chr11 18120338 18125196 -103718660 - L1_Mus1 LINE L1 -1 6566 1465 1 723 1023 161 28 146 chr11 18125196 18125559 -103718297 - RLTRETN_Mm LTR ERVK -2 320 1 1 723 26445 175 62 60 chr11 18125559 18126689 -103717167 - L1_Mus1 LINE L1 -4419 1464 331 1 723 847 285 86 40 chr11 18126742 18127467 -103716389 - L1MB1 LINE L1 -2996 3026 2268 1 723 239 200 74 12 chr11 18127603 18127684 -103716172 - MusHAL1 LINE L1 -2002 710 625 1 723 2621 270 92 31 chr11 18127723 18128492 -103715364 - Lx6 LINE L1 -9 7451 6636 1 723 4026 216 57 32 chr11 18128490 18129970 -103713886 + Lx6 LINE L1 5076 6607 -853 1 723 645 329 23 3 chr11 18129976 18130281 -103713575 - L1MB1 LINE L1 -4062 1993 1683 1 723 271 255 198 0 chr11 18130309 18130338 -103713518 - MT2A LTR ERVL 0 533 491 1 723 684 11 32 0 chr11 18130338 18130431 -103713425 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 723 271 255 198 0 chr11 18130431 18130558 -103713298 - MT2A LTR ERVL -43 490 347 1 723 735 342 81 18 chr11 18130572 18130965 -103712891 - MT2A LTR ERVL -115 418 1 1 723 986 236 155 10 chr11 18131028 18131324 -103712532 + MTD LTR MaLR 81 419 0 1 723 33528 72 1 20 chr11 18131967 18137273 -103706583 + L1Md_F2 LINE L1 384 5586 -297 1 723 8093 48 1 0 chr11 18137273 18138267 -103705589 + L1Md_F2 LINE L1 5587 6581 -1 1 723 277 294 0 0 chr11 18138458 18138526 -103705330 - MT2A LTR ERVL -122 411 344 1 723 7715 141 13 27 chr11 18138600 18140476 -103703380 + L1_Mus2 LINE L1 675 2521 -3362 1 723 9640 109 204 21 chr11 18140483 18143253 -103700603 + L1_Mus2 LINE L1 3201 6566 0 1 723 255 371 21 0 chr11 18143297 18143394 -103700462 - MT2A LTR ERVL -138 395 297 1 723 1720 298 37 8 chr11 18143509 18144105 -103699751 - L1_Mur3 LINE L1 -322 5558 4946 1 723 320 323 24 16 chr11 18144121 18144247 -103699609 + Lx8 LINE L1 6165 6291 -1182 1 723 3743 94 29 0 chr11 18144249 18144768 -103699088 + Lx3_Mus LINE L1 6476 7009 0 1 723 226 343 55 9 chr11 18144780 18144889 -103698967 + Lx8 LINE L1 6276 6389 -1084 1 723 479 360 11 0 chr11 18144903 18145078 -103698778 + Lx8 LINE L1 6563 6739 -734 1 723 1224 257 122 0 chr11 18145116 18145412 -103698444 + MTD LTR MaLR 3 334 -85 1 723 623 274 55 109 chr11 18145556 18145964 -103697892 - MLT1C LTR MaLR -2 388 1 1 723 303 28 0 0 chr11 18146528 18146564 -103697292 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 723 297 0 0 0 chr11 18148169 18148202 -103695654 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1 723 290 352 9 9 chr11 18148241 18148347 -103695509 - MER33 DNA MER1_type -203 121 16 1 723 291 363 41 27 chr11 18148376 18148668 -103695188 + Lx8 LINE L1 7156 7451 -22 1 723 1026 102 0 0 chr11 18148766 18148942 -103694914 + (TC)n Simple_repeat Simple_repeat 1 176 0 1 723 21 36 0 0 chr11 18149793 18149821 -103694035 + AT_rich Low_complexity Low_complexity 1 28 0 1 723 436 252 74 16 chr11 18149947 18150068 -103693788 - B1_Mur3 SINE Alu -17 132 5 1 723 228 284 26 39 chr11 18150565 18150642 -103693214 - MIRb SINE MIR -38 230 155 1 723 346 281 26 17 chr11 18150655 18150771 -103693085 + MTD LTR MaLR 4 120 -299 1 723 1546 68 14 0 chr11 18150786 18151006 -103692850 - Lx3_Mus LINE L1 0 7009 6787 1 723 465 90 0 0 chr11 18151341 18151408 -103692448 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 723 659 201 253 6 chr11 18152945 18153115 -103690741 - B3 SINE B2 -4 212 1 1 723 2482 65 0 58 chr11 18153190 18153551 -103690305 - L1Md_F2 LINE L1 -5 6577 6238 1 723 484 136 0 0 chr11 18154415 18154496 -103689360 - Lx9 LINE L1 -61 7583 7503 1 723 1586 164 94 0 chr11 18154497 18154795 -103689061 - ORR1A3 LTR MaLR 0 326 1 1 723 483 18 0 0 chr11 18154798 18154854 -103689002 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 723 4820 151 30 3 chr11 18154856 18156058 -103687798 + Lx4B LINE L1 5172 6406 -652 1 723 229 172 31 0 chr11 18156066 18156130 -103687726 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 723 447 102 114 0 chr11 18156156 18156244 -103687612 - Lx9 LINE L1 -136 7508 7411 1 723 571 206 153 18 chr11 18156248 18156411 -103687445 + Lx9 LINE L1 7213 7397 -247 1 723 1230 100 0 0 chr11 18157380 18157560 -103686296 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 723 849 71 0 0 chr11 18157562 18157675 -103686181 + (TCCC)n Simple_repeat Simple_repeat 4 116 0 1 723 675 0 0 0 chr11 18157675 18157749 -103686107 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 1 723 671 268 18 6 chr11 18158117 18158282 -103685574 + ORR1D2 LTR MaLR 9 175 -195 1 723 242 172 69 0 chr11 18158283 18158341 -103685515 + CT-rich Low_complexity Low_complexity 4 65 0 1 723 715 267 15 32 chr11 18158343 18158564 -103685292 + ORR1D2 LTR MaLR 158 379 0 1 723 3386 290 43 38 chr11 18158991 18160131 -103683725 + Lx8 LINE L1 6201 7346 -127 1 723 359 339 111 84 chr11 18160294 18160781 -103683075 + L1MC LINE L1 5318 5817 -2065 1 723 195 42 0 0 chr11 18162312 18162336 -103681520 + (A)n Simple_repeat Simple_repeat 1 24 0 1 723 824 130 0 8 chr11 18162480 18162612 -103681244 + URR1B DNA MER1_type 68 198 -27 1 723 734 155 119 0 chr11 18163686 18163854 -103680002 - Lx9 LINE L1 -6 7638 7451 1 723 231 202 56 56 chr11 18164437 18164526 -103679330 - Lx7 LINE L1 -329 7367 7279 1 723 2782 196 2 93 chr11 18164721 18165335 -103678521 + RMER15 LTR ERVL 3 560 -15 1 723 1447 288 65 28 chr11 18166323 18166923 -103676933 - L1MA4 LINE L1 -305 5995 5338 2 723 1083 76 7 7 chr11 18166923 18167068 -103676788 + B1_Mus1 SINE Alu 2 146 -2 2 723 198 0 0 0 chr11 18167068 18167090 -103676766 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2 723 1282 283 64 26 chr11 18167090 18167168 -103676688 - L1MA4 LINE L1 -543 5337 5262 2 723 225 65 0 0 chr11 18167481 18167512 -103676344 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 723 4599 242 29 21 chr11 18167515 18169150 -103674706 - Lx7 LINE L1 -1528 6168 4523 2 723 22 0 0 0 chr11 18170029 18170051 -103673805 + AT_rich Low_complexity Low_complexity 1 22 0 2 723 399 302 0 59 chr11 18170056 18170158 -103673698 - B3 SINE B2 -21 195 100 2 723 333 290 0 0 chr11 18170169 18170238 -103673618 - B3A SINE B2 -128 70 2 2 723 300 89 292 62 chr11 18171067 18171163 -103672693 - Lx9 LINE L1 -193 7451 7334 2 723 1267 202 63 19 chr11 18171165 18171482 -103672374 - Lx9 LINE L1 -517 7127 6797 2 723 420 97 0 0 chr11 18171482 18171544 -103672312 + (ATTG)n Simple_repeat Simple_repeat 2 63 0 2 723 1636 250 21 23 chr11 18171547 18171932 -103671924 - Lx5 LINE L1 -16 7034 6651 2 723 1660 261 35 4 chr11 18171949 18172410 -103671446 - Lx9 LINE L1 -847 6797 6323 2 723 663 234 28 21 chr11 18173661 18173805 -103670051 + B1_Mur1 SINE Alu 5 149 0 2 723 248 211 0 0 chr11 18173810 18173862 -103669994 + (CCA)n Simple_repeat Simple_repeat 3 54 0 2 723 194 292 181 99 chr11 18173975 18174146 -103669710 - L2c LINE L2 0 3387 3203 2 723 612 212 113 32 chr11 18175894 18176079 -103667777 + RLTR9A LTR ERVK 1 200 -168 2 723 244 302 30 30 chr11 18176662 18176761 -103667095 + ORR1D1 LTR MaLR 276 374 0 2 723 189 226 0 0 chr11 18177056 18177109 -103666747 + CT-rich Low_complexity Low_complexity 2 54 0 2 723 37 0 0 0 chr11 18178254 18178291 -103665565 + AT_rich Low_complexity Low_complexity 1 37 0 2 723 27 0 0 0 chr11 18178606 18178633 -103665223 + AT_rich Low_complexity Low_complexity 1 27 0 2 723 218 127 55 0 chr11 18179379 18179434 -103664422 + T-rich Low_complexity Low_complexity 2 59 0 2 723 1148 75 0 0 chr11 18179437 18179583 -103664273 - B1_Mus1 SINE Alu 0 148 3 2 723 1163 294 20 91 chr11 18179634 18180030 -103663826 - MTE2a LTR MaLR 0 379 12 2 723 23 0 0 0 chr11 18180508 18180531 -103663325 + AT_rich Low_complexity Low_complexity 1 23 0 2 723 23 0 0 0 chr11 18180819 18180842 -103663014 + AT_rich Low_complexity Low_complexity 1 23 0 2 723 476 301 73 5 chr11 18181396 18181600 -103662256 + L1MEc LINE L1 193 410 -5990 2 723 495 296 52 45 chr11 18181936 18182205 -103661651 + L1MEc LINE L1 581 851 -5549 2 723 585 276 32 32 chr11 18182218 18182577 -103661279 + L1MEc LINE L1 3198 3555 -2764 2 723 1088 90 14 0 chr11 18182692 18182837 -103661019 - B1_Mm SINE Alu 0 147 1 2 723 1045 280 72 22 chr11 18183026 18183347 -103660509 - MTD LTR MaLR -44 375 39 2 723 1083 254 34 83 chr11 18183772 18184150 -103659706 + MTE2a LTR MaLR 54 404 -15 2 723 300 261 159 47 chr11 18184227 18184460 -103659396 - L1M2 LINE L1 -1668 4475 4217 2 723 762 127 127 0 chr11 18184923 18185065 -103658791 + Lx3B LINE L1 6261 6420 -553 2 723 23 0 0 0 chr11 18185080 18185103 -103658753 + AT_rich Low_complexity Low_complexity 1 23 0 2 723 350 229 19 7 chr11 18185205 18185359 -103658497 + (TA)n Simple_repeat Simple_repeat 1 156 0 2 723 8178 31 0 0 chr11 18185690 18186750 -103657106 - L1Md_F2 LINE L1 -2 6580 5521 2 723 238 272 65 11 chr11 18186951 18187044 -103656812 + L1MB2 LINE L1 5906 6003 -168 2 723 318 206 109 16 chr11 18187107 18187235 -103656621 - Lx3C LINE L1 -2 6974 6835 2 723 1325 293 59 3 chr11 18187212 18187692 -103656164 - RMER1C Other Other -477 865 185 2 723 198 0 0 0 chr11 18187820 18187842 -103656014 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 723 993 126 0 17 chr11 18187842 18188020 -103655836 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2 723 1073 154 108 0 chr11 18188418 18188632 -103655224 - Lx2 LINE L1 0 6997 6761 2 723 6219 133 17 25 chr11 18188618 18189784 -103654072 - Lx2 LINE L1 -353 6644 5488 2 723 511 192 48 0 chr11 18189785 18189889 -103653967 - L1M2 LINE L1 -2381 3762 3654 2 723 9697 94 20 11 chr11 18189892 18191156 -103652700 - L1VL4 LINE L1 -285 3274 2007 2 723 1149 49 0 0 chr11 18191156 18191300 -103652556 + (TTC)n Simple_repeat Simple_repeat 2 145 0 2 723 9697 94 20 11 chr11 18191300 18191613 -103652243 - L1VL4 LINE L1 -1553 2006 1686 2 723 423 0 0 0 chr11 18191621 18191668 -103652188 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2 723 17548 92 3 0 chr11 18191675 18194918 -103648938 - L1_Mus2 LINE L1 -1 6565 3315 2 723 3536 106 2 16 chr11 18194918 18195909 -103647947 - L1VL4 LINE L1 -2172 1387 417 2 723 190 409 7 62 chr11 18196193 18196339 -103647517 - MIR SINE MIR -105 157 20 2 723 35552 23 3 7 chr11 18197218 18202449 -103641407 + L1Md_T LINE L1 384 5586 -297 2 723 8354 38 1 0 chr11 18202449 18203442 -103640414 + L1Md_T LINE L1 5587 6580 -2 2 723 23 78 0 0 chr11 18204065 18204116 -103639740 + AT_rich Low_complexity Low_complexity 1 51 0 2 723 228 389 0 0 chr11 18205080 18205152 -103638704 + RSINE1 SINE B4 3 74 -91 2 723 305 345 47 19 chr11 18205212 18205425 -103638431 + L1MC LINE L1 5446 5664 -2218 2 723 845 298 55 4 chr11 18205598 18205834 -103638022 + B4A SINE B4 43 290 -2 2 723 215 286 0 0 chr11 18205841 18205890 -103637966 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 723 2828 140 75 36 chr11 18206559 18207594 -103636262 + L1_Mur1 LINE L1 32 1446 -4440 2 723 340 235 0 12 chr11 18207591 18207677 -103636179 - L1VL2 LINE L1 -5941 394 310 2 723 7078 153 56 99 chr11 18207673 18208983 -103634873 + L1_Mur1 LINE L1 3596 4912 -974 2 723 234 0 0 0 chr11 18208983 18209009 -103634847 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 723 7078 153 56 99 chr11 18209009 18209782 -103634074 + L1_Mur1 LINE L1 4913 5588 -298 2 723 6694 58 93 12 chr11 18209782 18210692 -103633164 + L1Md_F2 LINE L1 5587 6570 -12 2 723 3281 89 8 2 chr11 18210692 18211167 -103632689 + Lx3_Mus LINE L1 6317 6794 -215 2 723 917 294 108 46 chr11 18211175 18211482 -103632374 + MTEa LTR MaLR 49 374 -5 2 723 1093 279 45 40 chr11 18211510 18211887 -103631969 - MTEa LTR MaLR 0 379 1 2 723 735 12 0 0 chr11 18212435 18212519 -103631337 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 2 723 1268 280 117 5 chr11 18212540 18212917 -103630939 + MTD LTR MaLR 1 419 0 2 723 331 342 60 13 chr11 18212949 18213100 -103630756 - HAL1-3A_ME LINE L1 -417 2441 2284 2 723 23 54 0 0 chr11 18213303 18213340 -103630516 + AT_rich Low_complexity Low_complexity 1 37 0 2 723 2155 164 110 110 chr11 18214655 18215184 -103628672 - RLTR24 LTR ERV1 0 529 1 2 723 420 20 0 0 chr11 18218127 18218176 -103625680 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 724 834 256 203 3 chr11 18219182 18219531 -103624325 + MTD LTR MaLR 1 419 0 2 724 411 274 29 0 chr11 18219768 18219870 -103623986 - BC1_Mm scRNA scRNA -41 111 7 2 724 639 316 89 35 chr11 18219876 18220158 -103623698 - ORR1E LTR MaLR -54 305 9 2 724 513 0 0 0 chr11 18220238 18220295 -103623561 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 724 468 0 0 0 chr11 18220295 18220346 -103623510 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 724 213 39 0 0 chr11 18220560 18220586 -103623270 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 724 653 142 26 26 chr11 18220586 18220702 -103623154 - B1_Mur3 SINE Alu -12 137 22 2 724 327 319 48 30 chr11 18221834 18221999 -103621857 + RMER15 LTR ERVL 276 443 -132 2 724 1674 185 85 3 chr11 18222878 18223208 -103620648 - ORR1B2 LTR MaLR -8 359 3 2 724 189 0 0 0 chr11 18223513 18223534 -103620322 + (TGG)n Simple_repeat Simple_repeat 1 21 0 2 724 199 342 41 49 chr11 18224798 18224921 -103618935 - MIRb SINE MIR -134 134 13 2 724 222 37 0 0 chr11 18225312 18225339 -103618517 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 724 738 0 0 0 chr11 18225422 18225504 -103618352 + (TTC)n Simple_repeat Simple_repeat 2 83 0 2 724 264 188 0 0 chr11 18226890 18226954 -103616902 + CT-rich Low_complexity Low_complexity 2 65 0 2 724 275 221 0 0 chr11 18227042 18227110 -103616746 + (CAT)n Simple_repeat Simple_repeat 3 70 0 2 724 229 220 0 17 chr11 18227174 18227234 -103616622 + (CAT)n Simple_repeat Simple_repeat 3 61 0 2 724 216 0 0 0 chr11 18227503 18227527 -103616329 + (T)n Simple_repeat Simple_repeat 1 24 0 2 724 251 262 58 35 chr11 18229382 18229469 -103614387 + ORR1E LTR MaLR 49 137 -222 2 724 441 351 82 41 chr11 18229825 18230045 -103613811 + B4A SINE B4 50 278 -14 2 724 914 140 29 64 chr11 18230284 18230539 -103613317 + RMER19C LTR ERVK 3 309 -302 2 724 571 304 70 11 chr11 18230624 18230810 -103613046 + B3A SINE B2 1 197 -1 2 724 643 268 46 11 chr11 18230907 18231081 -103612775 - Lx7 LINE L1 -4 7692 7513 2 724 591 112 0 0 chr11 18231105 18231194 -103612662 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 2 724 885 149 0 0 chr11 18231310 18231471 -103612385 + (TCC)n Simple_repeat Simple_repeat 3 163 0 2 724 247 293 10 42 chr11 18231476 18231572 -103612284 - RMER4A LTR ERVK -28 438 346 2 724 201 239 43 37 chr11 18231707 18231868 -103611988 + (CTG)n Simple_repeat Simple_repeat 3 164 0 2 724 207 247 40 40 chr11 18232027 18232204 -103611652 + (CTG)n Simple_repeat Simple_repeat 3 179 0 2 724 204 326 10 50 chr11 18232957 18233057 -103610799 + L2a LINE L2 3280 3375 -51 2 724 205 200 28 14 chr11 18233366 18233437 -103610419 + CT-rich Low_complexity Low_complexity 6 77 0 2 724 881 313 41 10 chr11 18235520 18235914 -103607942 + L1MA6 LINE L1 5480 5885 -415 2 724 2515 313 82 63 chr11 18235917 18236967 -103606889 - ORR1E-int LTR MaLR -132 1377 351 2 724 5186 163 62 28 chr11 18236968 18238034 -103605822 + L1Md_T LINE L1 104 1205 -5411 2 724 37161 32 0 0 chr11 18238040 18242458 -103601398 + L1Md_T LINE L1 1170 5586 -297 2 724 8457 58 0 1 chr11 18242458 18243495 -103600361 + L1Md_T LINE L1 5587 6582 0 2 724 811 326 110 6 chr11 18243495 18243822 -103600034 - ORR1E-int LTR MaLR -1217 363 3 2 724 1202 241 37 35 chr11 18243823 18244161 -103599695 - ORR1E LTR MaLR 0 379 22 2 724 662 188 8 23 chr11 18246381 18246512 -103597344 + ORR1B2 LTR MaLR 1 129 -238 2 724 222 247 13 27 chr11 18246640 18246715 -103597141 + GA-rich Low_complexity Low_complexity 4 77 0 2 724 474 101 0 0 chr11 18246716 18246785 -103597071 + (GGGGA)n Simple_repeat Simple_repeat 4 72 0 2 724 342 0 0 0 chr11 18246974 18247012 -103596844 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 724 293 343 48 0 chr11 18247281 18247386 -103596470 + RMER15 LTR ERVL 414 523 -52 2 724 437 292 69 17 chr11 18248031 18248195 -103595661 - L2a LINE L2 -4 3422 3199 3 724 190 328 0 0 chr11 18248214 18248275 -103595581 - MIRb SINE MIR -5 263 203 3 724 859 277 19 5 chr11 18250481 18250695 -103593161 - ID_B1 SINE B4 -4 220 4 3 724 206 309 33 67 chr11 18253217 18253307 -103590549 - L3b LINE CR1 -2 480 394 3 724 195 69 0 0 chr11 18253987 18254016 -103589840 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 724 24 53 0 0 chr11 18255470 18255508 -103588348 + AT_rich Low_complexity Low_complexity 1 38 0 3 724 2255 162 8 21 chr11 18258597 18258969 -103584887 + ORR1B2 LTR MaLR 1 367 0 3 724 1027 92 114 54 chr11 18259137 18259179 -103584677 - B2_Mm2 SINE B2 0 195 163 3 724 288 0 0 0 chr11 18259179 18259211 -103584645 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 724 1027 92 114 54 chr11 18259211 18259352 -103584504 - B2_Mm2 SINE B2 -33 162 1 3 724 486 0 0 0 chr11 18259462 18259516 -103584340 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 724 7385 111 43 81 chr11 18259520 18259886 -103583970 + Lx3B LINE L1 5802 6158 -815 3 724 3555 33 8 0 chr11 18259886 18260276 -103583580 + MTA_Mm LTR MaLR 4 396 0 3 724 7385 111 43 81 chr11 18260276 18261126 -103582730 + Lx3B LINE L1 6159 6973 0 3 724 1007 280 94 29 chr11 18262286 18262798 -103581058 - L1MB2 LINE L1 -37 6134 5590 3 724 343 166 50 17 chr11 18262807 18262884 -103580972 - ORR1D2 LTR MaLR -288 86 1 3 724 318 26 0 0 chr11 18263042 18263081 -103580775 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 724 360 303 141 21 chr11 18263506 18263698 -103580158 - MIR SINE MIR -28 234 20 3 724 268 321 85 0 chr11 18266203 18266309 -103577547 - MER5A DNA MER1_type -26 163 49 3 724 314 293 72 79 chr11 18266473 18266506 -103577350 + ID_B1 SINE B4 71 218 -3 3 724 537 250 86 0 chr11 18266506 18266622 -103577234 + B1_Mur1 SINE Alu 18 143 -6 3 724 720 279 123 45 chr11 18267052 18267344 -103576512 + MER2 DNA MER2_type 14 328 -17 3 724 246 177 0 42 chr11 18267408 18267467 -103576389 + B3A SINE B2 5 56 -160 3 724 2339 83 6 0 chr11 18267467 18267793 -103576063 - Lx3_Mus LINE L1 -754 6255 5928 3 724 5765 77 18 20 chr11 18267809 18268553 -103575303 + Lx3_Mus LINE L1 6268 7009 0 3 724 515 231 119 45 chr11 18268567 18268744 -103575112 + B3 SINE B2 27 216 0 3 724 921 275 35 92 chr11 18268782 18269031 -103574825 - Lx7 LINE L1 -1402 6071 5824 3 724 712 258 84 42 chr11 18269031 18269221 -103574635 + B3 SINE B2 2 199 -17 3 724 921 259 27 93 chr11 18269221 18269448 -103574408 - Lx7 LINE L1 -1867 5829 5618 3 724 1274 174 56 0 chr11 18269646 18269859 -103573997 + URR1B DNA MER1_type 1 225 0 3 724 242 87 22 0 chr11 18269945 18269991 -103573865 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 724 182 189 111 19 chr11 18270280 18270334 -103573522 - MIRb SINE MIR -122 146 88 3 724 180 0 0 0 chr11 18272181 18272201 -103571655 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 3 724 627 282 6 31 chr11 18273725 18273796 -103570060 + ID SINE ID 14 80 -144 3 724 309 319 35 26 chr11 18273796 18273912 -103569944 + PB1D10 SINE Alu 1 117 0 3 724 414 241 23 0 chr11 18274615 18274702 -103569154 + RMER20B LTR ERVK 1 89 -538 3 724 341 321 83 42 chr11 18274839 18275031 -103568825 + RMER20B LTR ERVK 317 516 0 3 724 736 100 8 8 chr11 18275093 18275214 -103568642 + (GGAA)n Simple_repeat Simple_repeat 3 123 0 3 724 1140 236 131 30 chr11 18275759 18276095 -103567761 + ORR1D2 LTR MaLR 1 370 0 3 724 298 309 21 0 chr11 18278115 18278209 -103565647 - MTEb LTR MaLR -1 378 283 3 724 560 297 16 10 chr11 18279772 18279996 -103563860 + L1M2 LINE L1 4515 4733 -1410 3 724 542 230 163 14 chr11 18280000 18280141 -103563715 + B3A SINE B2 1 162 -36 3 724 1090 317 113 55 chr11 18280174 18280362 -103563494 + Lx7 LINE L1 4717 4910 -937 3 724 1638 216 19 14 chr11 18280362 18280732 -103563124 + ORR1D1 LTR MaLR 1 372 -2 3 724 1090 317 113 55 chr11 18280732 18281055 -103562801 + Lx7 LINE L1 4911 5214 -633 3 724 201 74 0 0 chr11 18281055 18281082 -103562774 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 724 1090 296 89 55 chr11 18281082 18281660 -103562196 + Lx7 LINE L1 5215 5892 -1804 3 724 1227 292 16 48 chr11 18282018 18282395 -103561461 - MTE2a LTR MaLR -14 365 1 3 724 2775 308 71 36 chr11 18282395 18283338 -103560518 - MTE2a-int LTR MaLR 0 1580 605 3 724 563 319 16 21 chr11 18283315 18283507 -103560349 - MTE2a-int LTR MaLR -1358 222 32 3 724 297 325 32 0 chr11 18283578 18283701 -103560155 + RMER15-int LTR ERVL 4211 4337 -662 3 724 266 253 41 36 chr11 18283701 18283820 -103560036 - MTE2a LTR MaLR 0 370 257 3 724 25 83 0 0 chr11 18284164 18284224 -103559632 + AT_rich Low_complexity Low_complexity 1 60 0 3 724 306 67 0 0 chr11 18284328 18284373 -103559483 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 724 284 288 24 36 chr11 18285209 18285292 -103558564 - MER21B LTR ERV1 -88 775 694 3 724 925 299 68 23 chr11 18285498 18285806 -103558050 - MER21B LTR ERV1 -539 324 3 3 724 240 244 120 16 chr11 18286453 18286578 -103557278 - L1ME2z LINE L1 -14 6430 6293 3 724 508 267 189 21 chr11 18286593 18287205 -103556651 + Zaphod DNA Tip100 3282 3997 -34 3 724 344 171 26 0 chr11 18287205 18287281 -103556575 + CT-rich Low_complexity Low_complexity 5 82 0 3 724 575 142 0 9 chr11 18287337 18287444 -103556412 + Lx2 LINE L1 6891 6996 -1 3 724 339 198 0 0 chr11 18287558 18287635 -103556221 + CT-rich Low_complexity Low_complexity 31 107 0 3 724 333 0 0 0 chr11 18287635 18287672 -103556184 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 724 339 198 0 0 chr11 18287672 18287700 -103556156 + polypyrimidine Low_complexity Low_complexity 3 30 0 3 724 207 0 0 0 chr11 18287968 18287991 -103555865 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 724 513 0 0 0 chr11 18290649 18290706 -103553150 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 724 207 0 0 0 chr11 18290706 18290728 -103553128 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 724 13558 10 7 0 chr11 18291104 18292654 -103551202 + L1Md_A LINE L1 4027 5586 -297 3 724 8696 17 0 0 chr11 18292654 18293650 -103550206 + L1Md_A LINE L1 5587 6582 0 3 724 303 49 0 0 chr11 18294260 18294301 -103549555 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 3 724 356 326 62 7 chr11 18294471 18294616 -103549240 - Charlie10a DNA MER1_type -74 206 54 3 724 470 258 161 0 chr11 18294734 18294858 -103548998 + B1_Mur2 SINE Alu 1 144 -5 3 724 450 0 0 0 chr11 18294927 18294977 -103548879 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 724 342 152 0 0 chr11 18294979 18295038 -103548818 + GA-rich Low_complexity Low_complexity 3 61 0 3 724 243 361 36 57 chr11 18295296 18295490 -103548366 - B3A SINE B2 -7 191 2 3 724 264 246 0 0 chr11 18295745 18295802 -103548054 - MLT1I LTR MaLR -256 155 99 3 724 228 135 0 0 chr11 18297600 18297637 -103546219 + (T)n Simple_repeat Simple_repeat 1 37 0 3 724 859 63 8 16 chr11 18298189 18298317 -103545539 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 3 724 611 263 28 48 chr11 18303794 18303982 -103539874 + B3 SINE B2 3 198 0 3 724 246 62 0 0 chr11 18304194 18304226 -103539630 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 724 1186 7 7 0 chr11 18304226 18304369 -103539487 - L1Md_F2 LINE L1 -19 6563 6420 3 724 281 329 39 19 chr11 18305612 18305767 -103538089 - MIRb SINE MIR -67 201 44 3 724 21 0 0 0 chr11 18306026 18306047 -103537809 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 186 340 38 0 chr11 18306198 18306251 -103537605 - L2b LINE L2 -81 3294 3240 3 724 5594 188 59 22 chr11 18306287 18307423 -103536433 - Lx5 LINE L1 0 7050 5873 3 724 334 336 75 51 chr11 18307723 18307962 -103535894 + MIRb SINE MIR 1 246 -22 3 724 1207 255 68 46 chr11 18309411 18310067 -103533789 + L1ME2 LINE L1 5374 6039 -125 3 724 200 100 0 70 chr11 18310982 18311025 -103532831 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 724 699 294 64 16 chr11 18311152 18311526 -103532330 + L1MA4A LINE L1 5538 5929 -374 3 724 224 254 56 0 chr11 18311729 18311855 -103532001 + (TA)n Simple_repeat Simple_repeat 2 134 0 3 724 459 0 0 0 chr11 18315217 18315268 -103528588 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 724 301 218 111 37 chr11 18315272 18315353 -103528503 - RSINE1 SINE B4 -35 130 44 3 724 189 374 10 20 chr11 18315397 18315498 -103528358 + MIR SINE MIR 139 238 -24 3 724 360 257 0 0 chr11 18315796 18315870 -103527986 + ID4 SINE ID 3 76 -7 3 724 581 213 15 62 chr11 18315906 18316036 -103527820 - B1_Mur1 SINE Alu -21 128 5 3 724 265 360 19 97 chr11 18316071 18316329 -103527527 + B4A SINE B4 20 257 -35 3 724 227 250 17 0 chr11 18316375 18316435 -103527421 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 724 238 373 0 35 chr11 18317302 18317416 -103526440 + B4 SINE B4 34 143 -149 3 724 204 70 45 23 chr11 18318699 18318743 -103525113 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 3 724 1148 107 11 0 chr11 18319904 18320082 -103523774 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 724 5141 77 44 26 chr11 18320108 18320879 -103522977 - L1_Mus3 LINE L1 0 6638 5854 3 724 219 262 30 15 chr11 18321494 18321560 -103522296 - MIR SINE MIR -71 191 125 3 724 1581 194 83 14 chr11 18321780 18322130 -103521726 + ORR1D1 LTR MaLR 1 374 0 3 724 398 333 7 0 chr11 18322780 18322915 -103520941 + RMER15 LTR ERVL 353 488 -87 3 724 1631 244 42 13 chr11 18322940 18323326 -103520530 - MTD LTR MaLR -22 397 1 3 724 2029 325 78 20 chr11 18323409 18324644 -103519212 + RMER15-int LTR ERVL 3 1309 -3690 3 724 266 245 0 0 chr11 18324662 18324711 -103519145 + RSINE1 SINE B4 83 131 -34 3 724 297 0 0 0 chr11 18324714 18324747 -103519109 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 724 1946 331 56 26 chr11 18324798 18325650 -103518206 + RMER15-int LTR ERVL 1291 2168 -2831 3 724 2562 284 51 48 chr11 18325829 18326669 -103517187 + RMER15-int LTR ERVL 4155 4997 -2 3 724 270 329 38 44 chr11 18326776 18326935 -103516921 + RMER15 LTR ERVL 313 470 -105 3 724 2078 156 3 0 chr11 18327503 18327829 -103516027 + ORR1A2 LTR MaLR 1 327 0 3 724 839 304 72 8 chr11 18328175 18328468 -103515388 + MLT1C LTR MaLR 182 505 0 3 724 284 293 85 57 chr11 18329590 18329731 -103514125 - Charlie4z DNA MER1_type -17 150 6 3 724 307 269 36 36 chr11 18329747 18329886 -103513970 - L1MA5 LINE L1 -414 5886 5748 3 724 262 259 64 9 chr11 18329948 18330057 -103513799 + L1MA5 LINE L1 6180 6294 -6 3 724 271 276 68 99 chr11 18331528 18331689 -103512167 - LFSINE_Vert SINE SINE -1 458 303 3 724 795 21 0 0 chr11 18331875 18331968 -103511888 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 724 21 0 0 0 chr11 18332093 18332114 -103511742 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 209 250 0 0 chr11 18332678 18332726 -103511130 + GA-rich Low_complexity Low_complexity 1 48 0 4 724 3142 202 29 34 chr11 18333665 18334449 -103509407 + Lx7 LINE L1 6889 7668 -28 4 724 28 0 0 0 chr11 18334459 18334487 -103509369 + AT_rich Low_complexity Low_complexity 1 28 0 4 724 235 286 0 0 chr11 18334908 18334999 -103508857 - L1M3 LINE L1 -1656 4484 4394 4 724 423 0 0 0 chr11 18335205 18335252 -103508604 + (TAA)n Simple_repeat Simple_repeat 1 47 0 4 724 450 326 69 69 chr11 18335852 18336040 -103507816 - ORR1E LTR MaLR -170 189 2 4 724 389 330 67 17 chr11 18338811 18338990 -103504866 + MIR SINE MIR 1 188 -74 4 724 674 247 55 27 chr11 18341993 18342176 -103501680 + B3 SINE B2 6 193 -23 4 724 292 236 0 0 chr11 18342168 18342223 -103501633 + MTD LTR MaLR 365 419 0 4 724 1178 332 67 26 chr11 18342278 18343038 -103500818 - Lx8 LINE L1 -254 7219 6429 4 724 189 0 0 0 chr11 18345017 18345038 -103498818 + (T)n Simple_repeat Simple_repeat 1 21 0 4 724 215 61 0 29 chr11 18345351 18345385 -103498471 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 724 237 262 24 0 chr11 18345672 18345756 -103498100 + L1MB4 LINE L1 6093 6178 -2 4 724 633 80 0 0 chr11 18346488 18346576 -103497280 + (TTTTC)n Simple_repeat Simple_repeat 4 91 0 4 724 25 31 0 0 chr11 18346680 18346712 -103497144 + AT_rich Low_complexity Low_complexity 1 32 0 4 724 1221 106 0 0 chr11 18346837 18347017 -103496839 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 724 232 156 62 0 chr11 18347017 18347081 -103496775 + A-rich Low_complexity Low_complexity 1 68 0 4 724 195 42 0 0 chr11 18347089 18347113 -103496743 + (GGGAA)n Simple_repeat Simple_repeat 4 27 0 4 724 400 314 23 130 chr11 18348797 18349189 -103494667 + RMER10A LTR ERVL 75 424 -18 4 724 185 0 0 39 chr11 18350054 18350080 -103493776 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4 725 431 203 129 8 chr11 18350080 18350204 -103493652 + Lx7 LINE L1 7558 7696 0 4 725 824 314 43 14 chr11 18350397 18350675 -103493181 - B4A SINE B4 -6 286 1 4 725 435 68 0 0 chr11 18352549 18352608 -103491248 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 725 201 39 0 0 chr11 18352610 18352636 -103491220 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 4 725 381 259 114 57 chr11 18352758 18352881 -103490975 - B4A SINE B4 -141 151 22 4 725 216 362 14 0 chr11 18353186 18353255 -103490601 + RSINE1 SINE B4 7 76 -89 4 725 4029 257 76 76 chr11 18353265 18353512 -103490344 + ORR1D2-int LTR MaLR 8 272 -1098 4 725 813 99 0 0 chr11 18353512 18353633 -103490223 + (CA)n Simple_repeat Simple_repeat 2 122 0 4 725 4029 257 76 76 chr11 18353633 18353830 -103490026 + ORR1D2-int LTR MaLR 273 449 -921 4 725 1036 112 0 0 chr11 18353830 18353973 -103489883 + B1_Mus1 SINE Alu 1 143 -5 4 725 4029 257 76 76 chr11 18353973 18354890 -103488966 + ORR1D2-int LTR MaLR 450 1370 0 4 725 1204 248 109 3 chr11 18354890 18355221 -103488635 + ORR1D2 LTR MaLR 1 366 -4 4 725 180 0 0 0 chr11 18356024 18356044 -103487812 + (T)n Simple_repeat Simple_repeat 1 20 0 4 725 3289 155 125 10 chr11 18356173 18356791 -103487065 + RLTR17 LTR ERVK 4 692 0 4 725 6186 28 5 0 chr11 18357238 18357991 -103485865 - MT-int LTR MaLR -73 1025 269 4 725 211 235 0 19 chr11 18358164 18358216 -103485640 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 4 725 369 0 0 0 chr11 18360624 18360665 -103483191 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 725 195 42 0 0 chr11 18360665 18360688 -103483168 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 725 446 266 120 51 chr11 18361671 18362053 -103481803 + RLTR12B LTR ERVK 47 500 -28 4 725 2126 211 80 60 chr11 18362081 18362680 -103481176 - ORR1A3-int LTR MaLR -680 1283 673 4 725 690 287 135 35 chr11 18362564 18362824 -103481032 - MT2B LTR ERVL -315 286 1 4 725 271 176 26 51 chr11 18362866 18362944 -103480912 - ORR1A3-int LTR MaLR -1323 640 565 4 725 21281 163 35 34 chr11 18362944 18366464 -103477392 - Lx2B LINE L1 -788 6212 2625 4 725 1285 118 40 22 chr11 18366464 18366690 -103477166 - Lx LINE L1 0 6654 6425 4 725 21281 162 30 37 chr11 18366690 18367100 -103476756 - Lx2B LINE L1 -3253 2624 2218 4 725 328 20 41 0 chr11 18367100 18367149 -103476707 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 725 21281 162 30 37 chr11 18367149 18367312 -103476544 - Lx2B LINE L1 -3660 2217 2053 4 725 1097 90 0 0 chr11 18367312 18367457 -103476399 - B1_Mus2 SINE Alu 0 147 3 4 725 21281 172 47 27 chr11 18367457 18368639 -103475217 - Lx2B LINE L1 -3825 2052 881 4 725 26 30 0 0 chr11 18369534 18369567 -103474289 + AT_rich Low_complexity Low_complexity 1 33 0 4 725 1084 195 114 83 chr11 18369704 18370153 -103473703 + MT2B LTR ERVL 5 517 -84 4 725 288 53 0 0 chr11 18370155 18370193 -103473663 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 725 243 0 0 0 chr11 18370193 18370219 -103473637 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 725 185 178 22 0 chr11 18370224 18370269 -103473587 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 4 725 283 130 0 0 chr11 18370295 18370341 -103473515 + MT2B LTR ERVL 1 46 -555 4 725 267 31 0 0 chr11 18370342 18370374 -103473482 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 725 213 213 0 21 chr11 18370376 18370424 -103473432 + GA-rich Low_complexity Low_complexity 2 48 0 4 725 249 184 0 39 chr11 18370425 18370476 -103473380 + MT2_Mm LTR ERVL 445 493 0 4 725 1365 235 43 198 chr11 18370809 18371530 -103472326 - RMER19C LTR ERVK -2 609 1 4 725 406 162 68 4 chr11 18372286 18372382 -103471474 - MTD LTR MaLR -3 416 264 4 725 330 303 32 24 chr11 18374304 18374429 -103469427 - MIRb SINE MIR -89 179 54 4 725 324 350 0 0 chr11 18374671 18374791 -103469065 + Lx8 LINE L1 7210 7329 -144 4 725 22 0 0 0 chr11 18374903 18374925 -103468931 + AT_rich Low_complexity Low_complexity 1 22 0 4 725 475 232 53 30 chr11 18376552 18376721 -103467135 - L1MB4 LINE L1 -21 6159 5987 4 725 1962 271 96 21 chr11 18376778 18377477 -103466379 + Lx9 LINE L1 6566 7316 -328 4 725 474 355 51 40 chr11 18377593 18377769 -103466087 + B3 SINE B2 35 212 -4 4 725 183 42 0 0 chr11 18377848 18377872 -103465984 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 725 636 181 15 22 chr11 18380379 18380496 -103463360 + ORR1D1 LTR MaLR 1 116 -258 4 725 754 239 51 117 chr11 18380496 18380967 -103462889 + RLTR26 LTR ERVK 1 430 -476 4 725 1123 254 55 27 chr11 18381301 18381841 -103462015 - L1_Mur3 LINE L1 -4096 1751 1203 4 725 315 0 0 0 chr11 18382086 18382121 -103461735 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 725 380 154 0 30 chr11 18382292 18382359 -103461497 + URR1B DNA MER1_type 161 225 0 4 725 1831 209 13 5 chr11 18383087 18383462 -103460394 - ORR1C1 LTR MaLR 0 378 1 4 725 258 316 62 50 chr11 18383621 18383701 -103460155 - ID4_ SINE ID -2 81 1 4 725 243 258 0 16 chr11 18383722 18383785 -103460071 - B1F SINE Alu 0 149 88 4 725 21 36 0 0 chr11 18384417 18384445 -103459411 + AT_rich Low_complexity Low_complexity 1 28 0 4 725 3202 100 28 2 chr11 18384452 18384914 -103458942 - L1_Mus3 LINE L1 -12 6626 6153 4 725 210 202 226 78 chr11 18385254 18385356 -103458500 - MIR SINE MIR -68 140 24 4 725 182 336 45 38 chr11 18386904 18387037 -103456819 - MIRc SINE MIR -133 135 2 4 725 437 328 0 30 chr11 18387494 18387629 -103456227 - B3A SINE B2 -8 190 60 4 725 432 163 40 28 chr11 18388375 18388552 -103455304 + (TA)n Simple_repeat Simple_repeat 1 179 0 4 725 265 53 86 35 chr11 18388574 18388632 -103455224 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 4 725 185 185 89 100 chr11 18389166 18389256 -103454600 + L3 LINE CR1 4342 4430 -59 4 725 23 0 0 0 chr11 18389292 18389315 -103454541 + AT_rich Low_complexity Low_complexity 1 23 0 4 725 437 316 6 26 chr11 18390765 18390921 -103452935 + MER5B DNA MER1_type 10 162 -16 4 725 329 123 27 0 chr11 18391533 18391606 -103452250 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 4 725 275 360 0 44 chr11 18393504 18393594 -103450262 - MIRc SINE MIR -149 119 34 4 725 242 256 95 24 chr11 18395807 18395891 -103447965 - MLT1E LTR MaLR -81 572 483 4 725 180 0 0 0 chr11 18396400 18396420 -103447436 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 725 226 226 68 116 chr11 18396430 18396451 -103447405 + YREP_Mm Unknown Unknown 153 239 -1573 4 725 813 236 0 7 chr11 18396451 18396600 -103447256 - B1_Mur4 SINE Alu -2 148 1 4 725 226 226 68 116 chr11 18396600 18396620 -103447236 + YREP_Mm Unknown Unknown 240 333 -1479 4 725 378 0 0 0 chr11 18397862 18397904 -103445952 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 725 299 351 15 0 chr11 18398146 18398280 -103445576 + (CATA)n Simple_repeat Simple_repeat 3 138 0 4 725 198 103 0 0 chr11 18399943 18399972 -103443884 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 725 1429 58 7 17 chr11 18400686 18400983 -103442873 + (TTTC)n Simple_repeat Simple_repeat 1 294 0 4 725 384 45 29 15 chr11 18401091 18401159 -103442697 + (TTTTTA)n Simple_repeat Simple_repeat 4 72 0 4 725 641 271 45 15 chr11 18401166 18401368 -103442488 - B3 SINE B2 -7 209 2 4 725 550 281 28 20 chr11 18401422 18401676 -103442180 - L1MA5 LINE L1 0 6300 6045 4 725 544 314 118 0 chr11 18401853 18402108 -103441748 - B4A SINE B4 -6 286 2 4 725 574 198 0 11 chr11 18403577 18403751 -103440105 + (CA)n Simple_repeat Simple_repeat 2 173 0 4 725 26 0 0 0 chr11 18404130 18404156 -103439700 + AT_rich Low_complexity Low_complexity 1 26 0 4 725 1630 277 137 48 chr11 18404497 18406234 -103437622 - Lx5 LINE L1 -1745 5899 4054 4 725 1041 89 0 0 chr11 18406943 18407078 -103436778 + B1_Mus1 SINE Alu 2 136 -12 4 725 351 0 0 0 chr11 18407079 18407118 -103436738 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 725 23 33 0 0 chr11 18407639 18407669 -103436187 + AT_rich Low_complexity Low_complexity 1 30 0 4 725 1094 76 6 17 chr11 18408240 18408414 -103435442 + (GGA)n Simple_repeat Simple_repeat 3 174 0 4 725 549 0 0 0 chr11 18409263 18409324 -103434532 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 725 243 313 27 11 chr11 18410102 18410257 -103433599 - L1M3 LINE L1 -2827 3020 2881 5 725 853 173 131 0 chr11 18410258 18410426 -103433430 + ORR1A3 LTR MaLR 1 190 -136 5 725 1934 102 4 4 chr11 18410409 18410684 -103433172 - MT2B LTR ERVL -326 275 1 5 725 312 304 109 37 chr11 18410708 18411413 -103432443 - L1M3 LINE L1 -3274 2869 2116 5 725 189 0 0 0 chr11 18411674 18411695 -103432161 + (A)n Simple_repeat Simple_repeat 1 21 0 5 725 34613 45 1 16 chr11 18411695 18416880 -103426976 + L1Md_A LINE L1 487 5586 -297 5 725 8543 30 0 0 chr11 18416880 18417876 -103425980 + L1Md_A LINE L1 5587 6582 0 5 725 352 337 60 22 chr11 18417900 18418219 -103425637 - L1_Mm LINE L1 -3992 1891 1561 5 725 325 235 11 23 chr11 18418449 18418536 -103425320 - L1MEb LINE L1 -5177 893 808 5 725 1222 41 7 0 chr11 18418763 18418909 -103424947 - B1_Mm SINE Alu 0 147 1 5 725 449 293 67 82 chr11 18420048 18420379 -103423477 - L1MA4 LINE L1 -368 5932 5607 5 725 338 167 14 0 chr11 18420517 18420574 -103423282 + GA-rich Low_complexity Low_complexity 2 58 0 5 725 1357 44 0 16 chr11 18420574 18420757 -103423099 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 725 338 167 14 0 chr11 18420757 18420771 -103423085 + polypurine Low_complexity Low_complexity 59 72 0 5 725 1093 97 11 11 chr11 18420771 18420949 -103422907 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 725 259 135 0 0 chr11 18420950 18420987 -103422869 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 5 725 1433 39 0 6 chr11 18420987 18421168 -103422688 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 725 624 27 0 0 chr11 18421173 18421247 -103422609 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 5 725 222 380 0 18 chr11 18421519 18421629 -103422227 + L2a LINE L2 2326 2433 -986 5 725 534 279 12 43 chr11 18421683 18421844 -103422012 + MLT1B LTR MaLR 54 209 -181 5 725 629 103 0 87 chr11 18421859 18421997 -103421859 - L1_Mur2 LINE L1 -4549 1328 1203 5 725 357 261 114 101 chr11 18422034 18422096 -103421760 + MLT1B LTR MaLR 270 338 -129 5 725 312 94 0 0 chr11 18422096 18422149 -103421707 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 5 725 357 266 101 72 chr11 18422149 18422274 -103421582 + MLT1B LTR MaLR 271 420 -47 5 725 193 331 16 40 chr11 18422318 18422444 -103421412 + L2a LINE L2 2493 2615 -804 5 725 253 366 56 14 chr11 18422938 18423082 -103420774 + L2a LINE L2 3011 3160 -266 5 725 1422 171 239 21 chr11 18423378 18423755 -103420101 - RMER6B LTR ERVK 0 461 3 5 725 352 286 48 159 chr11 18423785 18423993 -103419863 - MTE2a LTR MaLR -194 185 1 5 725 614 57 0 0 chr11 18424060 18424148 -103419708 - L1Md_T LINE L1 0 6582 6495 5 725 376 298 134 11 chr11 18426744 18427012 -103416844 + L1M4 LINE L1 4060 4360 -1786 5 725 544 204 17 58 chr11 18427230 18427350 -103416506 + PB1D9 SINE Alu 2 116 -4 5 725 497 349 7 0 chr11 18427357 18427506 -103416350 + A-rich Low_complexity Low_complexity 4 153 0 5 725 757 90 24 8 chr11 18427506 18427629 -103416227 + (GGAAA)n Simple_repeat Simple_repeat 3 127 0 5 725 406 234 0 0 chr11 18428605 18428682 -103415174 + LFSINE_Vert SINE SINE 13 89 -370 5 725 709 99 197 47 chr11 18429062 18429189 -103414667 + B1_Mus1 SINE Alu 2 147 -1 5 725 223 111 0 82 chr11 18429190 18429239 -103414617 + A-rich Low_complexity Low_complexity 4 48 0 5 725 335 384 70 5 chr11 18429380 18429566 -103414290 - LTR85a LTR Gypsy? -11 691 494 5 725 4238 164 81 71 chr11 18429993 18430875 -103412981 - RMER19B LTR ERVK -12 890 1 5 725 185 267 69 77 chr11 18430918 18431048 -103412808 - L2 LINE L2 -3188 231 103 5 725 1048 255 119 0 chr11 18433484 18433762 -103410094 - MER2 DNA MER2_type -8 337 27 5 725 257 128 21 0 chr11 18434000 18434047 -103409809 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 5 725 450 0 0 0 chr11 18436769 18436819 -103407037 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 725 538 214 58 13 chr11 18436823 18436979 -103406877 - MERVL_2A-int LTR ERVL -556 5205 5043 5 725 1117 326 22 36 chr11 18437035 18437438 -103406418 + MTE-int LTR MaLR 908 1387 -193 5 725 901 307 33 93 chr11 18437527 18437926 -103405930 + MTE2a LTR MaLR 3 377 -2 5 725 183 80 0 0 chr11 18438253 18438278 -103405578 + (TTG)n Simple_repeat Simple_repeat 2 26 0 5 725 564 15 0 0 chr11 18438864 18438929 -103404927 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 725 1083 263 70 5 chr11 18439045 18439442 -103404414 + Lx9 LINE L1 7198 7620 -24 5 725 201 121 0 0 chr11 18439478 18439511 -103404345 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 5 725 205 361 92 8 chr11 18439701 18439821 -103404035 - MIRc SINE MIR -135 133 4 5 725 370 339 63 37 chr11 18439990 18440180 -103403676 + MER20 DNA MER1_type 6 200 -19 5 725 1643 209 86 7 chr11 18440746 18441174 -103402682 + RCHARR1 DNA MER1_type 312 773 -201 5 725 438 261 45 30 chr11 18443590 18443835 -103400021 - L1MA10 LINE L1 -13 6321 5919 5 725 438 260 52 23 chr11 18444272 18444445 -103399411 - MER53 DNA hAT -15 178 1 5 725 309 51 0 0 chr11 18446853 18446892 -103396964 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 725 738 232 78 54 chr11 18448612 18448817 -103395039 + B3 SINE B2 1 210 -6 5 725 16008 132 104 15 chr11 18449311 18450451 -103393405 + L1_Mus2 LINE L1 415 1591 -4292 5 725 838 94 126 0 chr11 18450451 18450578 -103393278 + B1_Mm SINE Alu 5 147 0 5 725 16008 128 189 18 chr11 18450578 18454671 -103389185 + L1_Mus2 LINE L1 1592 6566 0 5 725 22 0 0 0 chr11 18454934 18454956 -103388900 + AT_rich Low_complexity Low_complexity 1 22 0 5 725 537 312 70 0 chr11 18459985 18460142 -103383714 + RMER30 DNA MER1_type 8 175 -27 5 725 189 329 104 52 chr11 18460692 18460846 -103383010 + L2a LINE L2 3057 3218 -208 5 725 804 311 95 0 chr11 18461283 18461589 -103382267 - MER2 DNA MER2_type -5 340 6 5 725 202 341 0 44 chr11 18462248 18462383 -103381473 + T-rich Low_complexity Low_complexity 1 129 0 5 725 732 248 62 67 chr11 18462385 18462593 -103381263 - B3 SINE B2 -1 215 9 5 725 418 371 88 31 chr11 18464307 18464535 -103379321 + MLT1I LTR MaLR 16 256 -155 5 725 648 278 0 83 chr11 18464923 18465139 -103378717 + B3A SINE B2 1 198 0 5 725 194 0 39 0 chr11 18465473 18465499 -103378357 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 725 1236 41 0 0 chr11 18465503 18465650 -103378206 - B1_Mm SINE Alu 0 147 1 5 725 254 50 0 24 chr11 18465678 18465719 -103378137 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 725 21 0 0 0 chr11 18465958 18465979 -103377877 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 257 385 26 33 chr11 18466353 18466506 -103377350 + MER20 DNA MER1_type 23 174 -45 5 725 325 328 111 15 chr11 18466930 18467128 -103376728 - MIRb SINE MIR -50 218 2 5 725 3677 64 2 16 chr11 18467498 18467993 -103375863 - L1Md_F2 LINE L1 -2 6580 6093 5 725 1206 156 21 0 chr11 18468280 18468472 -103375384 + URR1A DNA MER1_type 31 226 0 5 725 1010 222 14 19 chr11 18468791 18469007 -103374849 + B3 SINE B2 2 216 0 5 725 1203 327 40 20 chr11 18469705 18470454 -103373402 + L1M2 LINE L1 4541 5304 -839 5 725 462 298 44 6 chr11 18470463 18470622 -103373234 + RSINE1 SINE B4 1 165 0 5 725 223 341 32 32 chr11 18470887 18470981 -103372875 + MIR SINE MIR 32 125 -137 5 725 227 301 171 47 chr11 18471045 18471174 -103372682 - LTR16A LTR ERVL -203 248 104 5 725 299 259 36 133 chr11 18471797 18471962 -103371894 - MTEb LTR MaLR -13 366 218 5 725 393 22 0 0 chr11 18473402 18473448 -103370408 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 725 7095 29 0 0 chr11 18473620 18474423 -103369433 + RLTR13B4 LTR ERVK 1 803 0 5 725 1341 178 73 56 chr11 18474890 18475247 -103368609 + Lx5 LINE L1 4423 4785 -1092 5 725 3680 163 43 12 chr11 18475242 18476275 -103367581 + Lx5 LINE L1 5183 6300 -758 5 725 519 17 0 0 chr11 18476342 18476402 -103367454 + (TAAAA)n Simple_repeat Simple_repeat 5 64 0 5 725 341 131 16 0 chr11 18476837 18476898 -103366958 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 5 725 222 211 13 66 chr11 18477439 18477515 -103366341 + CT-rich Low_complexity Low_complexity 3 74 0 5 725 2625 225 11 16 chr11 18478517 18479078 -103364778 + Lx5 LINE L1 6473 7030 -20 5 725 243 0 0 0 chr11 18479079 18479106 -103364750 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 725 227 278 110 14 chr11 18479112 18479178 -103364678 - MTD LTR MaLR -85 294 222 5 725 516 362 0 28 chr11 18479178 18479323 -103364533 + RSINE1 SINE B4 3 143 -22 5 725 663 279 31 36 chr11 18479379 18479529 -103364327 + B3A SINE B2 7 160 -38 5 725 486 0 0 0 chr11 18479529 18479583 -103364273 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 725 663 279 31 36 chr11 18479583 18479625 -103364231 + B3A SINE B2 161 198 0 5 725 376 281 60 17 chr11 18479651 18479767 -103364089 - MTD LTR MaLR -298 121 1 5 725 270 305 213 0 chr11 18480451 18480648 -103363208 + MIR SINE MIR 10 248 -14 5 726 421 332 47 61 chr11 18482936 18483148 -103360708 - MER20 DNA MER1_type -4 215 7 5 726 753 12 0 0 chr11 18484026 18484112 -103359744 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 726 414 0 0 0 chr11 18488728 18488774 -103355082 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 726 294 245 140 75 chr11 18488903 18489062 -103354794 + B3 SINE B2 6 210 -6 5 726 306 0 0 0 chr11 18489707 18489741 -103354115 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 726 405 0 0 0 chr11 18489741 18489785 -103354071 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 726 223 287 43 17 chr11 18493179 18493296 -103350560 + CT-rich Low_complexity Low_complexity 2 121 0 5 726 2405 185 0 56 chr11 18495707 18496223 -103347633 - L1_Mm LINE L1 -267 5616 5130 5 726 216 67 0 0 chr11 18496225 18496255 -103347601 + (TAA)n Simple_repeat Simple_repeat 2 31 0 5 726 207 0 0 0 chr11 18496277 18496300 -103347556 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 726 242 388 0 0 chr11 18496554 18496634 -103347222 + MIRc SINE MIR 72 151 -117 5 726 591 174 32 58 chr11 18497963 18498138 -103345718 - ORR1D1 LTR MaLR 0 419 257 5 726 540 236 106 14 chr11 18499005 18499147 -103344709 - RSINE1 SINE B4 -8 157 3 5 726 216 0 0 0 chr11 18499914 18499938 -103343918 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 6 726 325 155 18 20 chr11 18501020 18501087 -103342769 + ID4_ SINE ID 3 68 -84 1 726 568 254 129 5 chr11 18501207 18501393 -103342463 - B3 SINE B2 -5 211 3 2 726 509 232 44 56 chr11 18501401 18501561 -103342295 + MER58A DNA MER1_type 52 209 -15 3 726 26 0 0 0 chr11 18502071 18502097 -103341759 + AT_rich Low_complexity Low_complexity 1 26 0 4 726 714 34 0 0 chr11 18502448 18502537 -103341319 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 726 240 35 0 0 chr11 18502537 18502565 -103341291 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 726 367 317 107 66 chr11 18503077 18503273 -103340583 + B4A SINE B4 5 208 -84 7 726 1269 214 63 35 chr11 18503392 18503740 -103340116 + RMER13B LTR ERVK 370 727 -181 8 726 702 205 202 34 chr11 18503734 18503971 -103339885 + RMER13B LTR ERVK 628 904 -4 9 726 244 23 0 85 chr11 18504291 18504338 -103339518 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 726 1283 54 0 0 chr11 18504346 18504493 -103339363 - B1_Mm SINE Alu 0 147 1 1 726 471 63 0 0 chr11 18505568 18505631 -103338225 + (CCA)n Simple_repeat Simple_repeat 3 65 0 1 726 968 106 13 0 chr11 18505966 18506117 -103337739 + (GGGAGA)n Simple_repeat Simple_repeat 5 157 0 1 726 216 97 0 0 chr11 18506448 18506479 -103337377 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 1 726 535 277 6 86 chr11 18508722 18508896 -103334960 - MTE2a LTR MaLR -52 327 168 1 726 968 170 99 5 chr11 18509166 18509367 -103334489 - URR1A DNA MER1_type -1 225 6 1 726 558 61 0 58 chr11 18510488 18510575 -103333281 - L1Md_F2 LINE L1 -12 6570 6489 1 726 3432 45 0 0 chr11 18510958 18511359 -103332497 - L1Md_F2 LINE L1 -98 6484 6084 1 726 311 0 0 25 chr11 18511944 18511984 -103331872 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 726 554 257 41 41 chr11 18512180 18512399 -103331457 - Lx7 LINE L1 0 7696 7478 1 726 183 42 0 0 chr11 18512900 18512924 -103330932 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 726 192 125 0 0 chr11 18512927 18512959 -103330897 + (T)n Simple_repeat Simple_repeat 1 32 0 2 726 1141 95 0 13 chr11 18512960 18513110 -103330746 - B1_Mus1 SINE Alu 0 148 1 2 726 205 302 16 0 chr11 18513311 18513374 -103330482 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 726 228 67 0 0 chr11 18513556 18513586 -103330270 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 726 7704 52 19 0 chr11 18514378 18515321 -103328535 - L1_Mus1 LINE L1 -1 6566 5606 2 726 229 283 258 38 chr11 18515321 18515740 -103328116 + L1ME2z LINE L1 5926 6436 -8 2 726 560 268 144 20 chr11 18515958 18516160 -103327696 + RMER15 LTR ERVL 306 532 -43 2 726 325 297 14 3 chr11 18516175 18516284 -103327572 - L1M5 LINE L1 -1546 4600 4491 2 726 3467 67 7 0 chr11 18516326 18516744 -103327112 + BGLII LTR ERVK 1 421 0 2 726 429 70 0 0 chr11 18518937 18518994 -103324862 + (T)n Simple_repeat Simple_repeat 1 57 0 3 726 1069 51 0 14 chr11 18518994 18519133 -103324723 - B1_Mus1 SINE Alu 0 148 12 3 726 527 224 71 77 chr11 18518999 18519154 -103324702 - B4 SINE B4 -69 223 70 3 726 1915 191 67 19 chr11 18519525 18519898 -103323958 + ORR1B1 LTR MaLR 1 391 -3 3 726 252 292 43 53 chr11 18520010 18520104 -103323752 - MLT1C LTR MaLR -2 465 373 3 726 372 259 0 0 chr11 18520288 18520373 -103323483 - MLT1C LTR MaLR -325 142 58 3 726 539 273 14 35 chr11 18520931 18521075 -103322781 + RSINE1 SINE B4 3 143 -22 3 726 39302 8 0 0 chr11 18523172 18528750 -103315106 + L1Md_A LINE L1 9 5586 -297 3 726 9446 6 4 0 chr11 18528750 18529740 -103314116 + L1Md_A LINE L1 5587 6580 -2 3 726 420 191 0 0 chr11 18531845 18531934 -103311922 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 726 212 337 0 44 chr11 18532036 18532126 -103311730 + MIR SINE MIR 59 144 -118 3 726 234 0 0 0 chr11 18533891 18533917 -103309939 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 3 726 36416 46 0 3 chr11 18536171 18541617 -103302239 + L1Md_T LINE L1 66 5589 -297 4 726 8982 32 1 0 chr11 18541617 18542645 -103301211 + L1Md_T LINE L1 5590 6585 0 4 726 7223 35 15 0 chr11 18543213 18544031 -103299825 + L1Md_F3 LINE L1 5742 6571 -13 4 726 642 211 21 21 chr11 18544080 18544225 -103299631 + Lx8 LINE L1 6355 6499 -974 4 726 656 289 15 19 chr11 18544325 18544530 -103299326 + Lx9 LINE L1 6591 6794 -850 4 726 311 0 0 25 chr11 18544531 18544571 -103299285 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 726 817 174 80 0 chr11 18544616 18544754 -103299102 - B1_Mur4 SINE Alu -1 149 1 4 726 1577 254 19 51 chr11 18544755 18545179 -103298677 + Lx9 LINE L1 6784 7197 -447 4 726 3332 47 39 0 chr11 18545179 18545560 -103298296 - MTA_Mm LTR MaLR 0 396 1 4 726 1577 254 19 51 chr11 18545560 18545621 -103298235 + Lx9 LINE L1 7198 7253 -391 4 726 295 297 85 0 chr11 18545661 18545779 -103298077 + Lx9 LINE L1 7367 7494 -150 4 726 34 24 0 0 chr11 18545872 18545913 -103297943 + AT_rich Low_complexity Low_complexity 1 41 0 4 726 4031 229 75 84 chr11 18545983 18547828 -103296028 - RMER1A Other Other -2 1028 7 4 726 476 369 61 35 chr11 18548564 18548825 -103295031 + MLT1J1 LTR MaLR 61 328 -116 4 726 193 300 67 0 chr11 18549523 18549583 -103294273 - MIRc SINE MIR -198 70 7 5 726 300 70 0 0 chr11 18550333 18550376 -103293480 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 726 333 235 23 23 chr11 18550693 18550780 -103293076 - L1MC1 LINE L1 -20 6313 6227 5 726 226 293 85 0 chr11 18550838 18550920 -103292936 - L1MC1 LINE L1 -216 6117 6029 5 726 616 304 98 46 chr11 18550990 18551356 -103292500 - L1MCa LINE L1 -6040 468 84 5 726 1522 272 96 33 chr11 18551354 18551936 -103291920 - Lx9 LINE L1 -8 7636 7018 5 726 391 198 24 24 chr11 18551935 18552018 -103291838 - L1MCa LINE L1 -6408 100 18 5 726 422 354 6 12 chr11 18552361 18552527 -103291329 + B4 SINE B4 122 286 -6 5 726 263 354 10 0 chr11 18552535 18552634 -103291222 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 726 238 26 25 25 chr11 18553824 18553864 -103289992 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 726 2270 296 56 40 chr11 18554187 18554988 -103288868 + Lx8 LINE L1 6351 7164 -309 5 726 305 336 48 0 chr11 18555188 18555313 -103288543 - Lx8 LINE L1 -478 6995 6865 5 726 212 258 30 15 chr11 18556960 18557027 -103286829 - PB1D10 SINE Alu 0 117 50 6 726 287 266 121 14 chr11 18557569 18557710 -103286146 - MER105 DNA DNA -1 203 48 6 726 1259 264 99 64 chr11 18558431 18558966 -103284890 + MER34A LTR ERV1 10 563 -8 6 726 337 286 0 13 chr11 18559323 18559401 -103284455 + RMER30 DNA MER1_type 5 81 -121 6 726 23623 153 11 13 chr11 18559401 18561498 -103282358 + L1_Mus3 LINE L1 365 2467 -3416 6 726 975 110 15 0 chr11 18561498 18561634 -103282222 + B1_Mus1 SINE Alu 4 141 -7 6 726 23623 155 19 19 chr11 18561634 18561651 -103282205 + L1_Mus3 LINE L1 2468 2468 -3415 6 726 1029 45 0 63 chr11 18561651 18561841 -103282015 + (GGGAA)n Simple_repeat Simple_repeat 2 179 0 6 726 537 16 0 0 chr11 18561846 18561908 -103281948 + (GGGGA)n Simple_repeat Simple_repeat 1 62 0 6 726 23623 155 19 19 chr11 18561908 18564174 -103279682 + L1_Mus3 LINE L1 2468 4731 -1152 6 726 279 0 0 0 chr11 18564174 18564205 -103279651 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 726 23623 112 12 9 chr11 18564205 18566085 -103277771 + L1_Mus3 LINE L1 4732 6633 -5 6 726 724 243 28 2 chr11 18566125 18566342 -103277514 + Lx7 LINE L1 5663 5914 -1782 6 726 450 226 68 10 chr11 18566574 18566677 -103277179 + RMER30 DNA MER1_type 89 197 -5 6 726 566 318 72 76 chr11 18566753 18567029 -103276827 + B4A SINE B4 2 276 -16 7 726 612 0 0 0 chr11 18567048 18567116 -103276740 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 726 227 281 0 0 chr11 18567255 18567312 -103276544 - MER104 DNA Tc2 -3 178 122 7 726 207 100 0 0 chr11 18567368 18567398 -103276458 + (A)n Simple_repeat Simple_repeat 1 30 0 7 726 183 358 62 49 chr11 18567817 18567961 -103275895 - MIRb SINE MIR -103 165 20 7 726 24 0 0 0 chr11 18569632 18569656 -103274200 + AT_rich Low_complexity Low_complexity 1 24 0 7 726 1013 198 14 32 chr11 18571084 18571303 -103272553 + B3 SINE B2 1 215 -1 7 726 384 340 104 60 chr11 18572026 18572276 -103271580 + MLT1I LTR MaLR 85 345 -66 7 726 801 124 0 0 chr11 18572964 18573093 -103270763 + (TC)n Simple_repeat Simple_repeat 1 129 0 7 726 288 0 0 0 chr11 18573096 18573128 -103270728 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 726 830 311 111 8 chr11 18573990 18574180 -103269676 - MLT1C LTR MaLR -26 441 246 8 726 2100 167 19 3 chr11 18574180 18574552 -103269304 + ORR1C1 LTR MaLR 1 378 0 8 726 830 311 111 8 chr11 18574552 18574731 -103269125 - MLT1C LTR MaLR -222 245 36 8 726 240 268 55 67 chr11 18574829 18574993 -103268863 - Charlie7a DNA MER1_type -66 206 45 8 726 1067 258 63 6 chr11 18575132 18575464 -103268392 + Lx6 LINE L1 7067 7417 -43 8 726 306 375 25 0 chr11 18575656 18575776 -103268080 + ID_B1 SINE B4 82 204 -20 8 726 387 328 79 91 chr11 18576892 18577234 -103266622 + MTEa LTR MaLR 40 377 -2 8 726 274 285 76 15 chr11 18577282 18577414 -103266442 - RCHARR1 DNA MER1_type 0 974 835 8 726 314 362 80 84 chr11 18577491 18577765 -103266091 - B4 SINE B4 -18 274 2 8 726 2123 248 88 19 chr11 18577765 18578460 -103265396 - RCHARR1 DNA MER1_type -122 852 110 8 726 7298 74 7 22 chr11 18578478 18578969 -103264887 - L1_Mus3 LINE L1 -2 6636 6151 8 726 396 0 0 0 chr11 18578969 18579013 -103264843 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 726 958 76 92 0 chr11 18579017 18579148 -103264708 - B1_Mus1 SINE Alu -5 143 1 9 726 7298 84 8 19 chr11 18579148 18579929 -103263927 - L1_Mus3 LINE L1 -488 6150 5379 8 726 614 304 32 98 chr11 18580076 18580353 -103263503 - MTEa LTR MaLR -31 348 90 9 726 348 24 0 0 chr11 18581333 18581374 -103262482 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 726 226 321 9 78 chr11 18582141 18582256 -103261600 + MLT1H LTR MaLR 434 540 -9 9 726 704 238 59 35 chr11 18582315 18582485 -103261371 + B3A SINE B2 1 174 -24 9 726 729 289 45 0 chr11 18582530 18582731 -103261125 + B3 SINE B2 2 211 -5 9 726 246 240 27 78 chr11 18583074 18583234 -103260622 - MIRc SINE MIR -81 187 29 9 726 432 0 0 0 chr11 18583836 18583884 -103259972 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 9 726 288 53 0 0 chr11 18584608 18584646 -103259210 + (CAG)n Simple_repeat Simple_repeat 1 38 0 9 726 8167 24 5 0 chr11 18585467 18586537 -103257319 - L1Md_T LINE L1 0 6582 5508 9 726 15951 16 0 1 chr11 18586532 18588470 -103255386 + L1Md_T LINE L1 3597 5532 -351 9 726 723 161 0 0 chr11 18588782 18588962 -103254894 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1 726 764 169 0 7 chr11 18588962 18589117 -103254739 + CT-rich Low_complexity Low_complexity 3 156 0 1 726 236 169 39 13 chr11 18589132 18589210 -103254646 + CT-rich Low_complexity Low_complexity 3 82 0 1 726 337 328 24 57 chr11 18589279 18589402 -103254454 + RSINE1 SINE B4 44 162 -3 1 726 585 303 90 32 chr11 18589415 18589913 -103253943 + L1ME3B LINE L1 5373 5899 -341 1 726 967 284 148 31 chr11 18591781 18592105 -103251751 - MTEb LTR MaLR -15 364 3 1 726 647 285 84 80 chr11 18592107 18592382 -103251474 + MTEa LTR MaLR 104 379 0 1 726 35 0 0 0 chr11 18592576 18592611 -103251245 + AT_rich Low_complexity Low_complexity 1 35 0 1 726 1402 239 36 34 chr11 18592667 18593319 -103250537 + Lx7 LINE L1 5463 6140 -1333 1 726 1440 116 0 70 chr11 18593318 18593577 -103250279 - Lx4A LINE L1 -117 5760 5520 1 726 1629 94 0 20 chr11 18593572 18593822 -103250034 + Lx4A LINE L1 5782 6026 -1032 1 726 851 289 46 0 chr11 18593831 18594111 -103249745 + Lx7 LINE L1 7179 7471 -2 1 726 410 321 44 48 chr11 18595148 18595354 -103248502 - MER58A DNA MER1_type -10 214 10 1 726 508 309 40 0 chr11 18595827 18595859 -103247997 + RSINE1 SINE B4 2 39 -126 1 726 456 35 0 0 chr11 18595859 18595917 -103247939 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 1 726 508 309 40 0 chr11 18595917 18596036 -103247820 + RSINE1 SINE B4 40 158 -7 1 726 293 264 107 8 chr11 18596573 18596695 -103247161 + RMER5 LTR ERV1 156 289 -245 1 726 221 91 0 43 chr11 18598357 18598403 -103245453 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 1 726 489 280 29 35 chr11 18598426 18598600 -103245256 + MER104 DNA Tc2 9 181 0 1 726 1301 192 4 20 chr11 18599059 18599309 -103244547 - MTB_Mm LTR MaLR -161 246 1 1 726 237 272 119 36 chr11 18599884 18599968 -103243888 - B1F SINE Alu -44 105 15 1 726 265 198 22 0 chr11 18600393 18600484 -103243372 + GA-rich Low_complexity Low_complexity 5 97 0 1 726 231 345 8 8 chr11 18600713 18600830 -103243026 + CT-rich Low_complexity Low_complexity 5 121 0 1 726 384 22 0 0 chr11 18601066 18601111 -103242745 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 726 201 204 20 0 chr11 18601398 18601447 -103242409 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 726 201 74 0 0 chr11 18601656 18601683 -103242173 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1 726 264 270 175 0 chr11 18602375 18602501 -103241355 - B1F1 SINE Alu -1 148 1 1 726 442 252 102 8 chr11 18602728 18602856 -103241000 - B1F1 SINE Alu -1 148 9 1 726 431 277 117 48 chr11 18602985 18603398 -103240458 + L1M4 LINE L1 3548 3984 -2162 1 726 302 313 0 0 chr11 18603558 18603671 -103240185 + Lx2A1 LINE L1 5805 5917 -1141 1 726 981 308 28 45 chr11 18603681 18604188 -103239668 + Lx9 LINE L1 6973 7470 -174 1 726 261 0 0 0 chr11 18604206 18604235 -103239621 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 726 521 330 79 69 chr11 18604338 18604716 -103239140 + L1M4 LINE L1 3972 4353 -1793 1 726 666 261 192 0 chr11 18604725 18605012 -103238844 + L1_Mur3 LINE L1 3482 3823 -2057 1 726 643 255 24 0 chr11 18605198 18605410 -103238446 + L1M4 LINE L1 4405 4621 -1525 1 726 10407 21 2 1 chr11 18605585 18606859 -103236997 + L1Md_T LINE L1 4311 5586 -297 1 726 8575 28 0 0 chr11 18606859 18607853 -103236003 + L1Md_T LINE L1 5587 6580 -2 1 726 399 259 88 56 chr11 18607853 18608159 -103235697 + L1M4 LINE L1 5005 5320 -826 1 726 430 291 134 35 chr11 18608298 18608722 -103235134 + Charlie2b DNA MER1_type 1838 2303 -479 1 726 378 229 212 18 chr11 18608731 18608801 -103235055 - MTD LTR MaLR -212 195 112 1 726 648 0 0 0 chr11 18608801 18608873 -103234983 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 1 726 378 210 225 8 chr11 18608873 18608959 -103234897 - MTD LTR MaLR -298 121 10 1 726 2837 278 83 14 chr11 18608981 18609954 -103233902 + Lx8 LINE L1 6362 7401 -72 1 726 28 48 0 0 chr11 18609955 18609997 -103233859 + AT_rich Low_complexity Low_complexity 1 42 0 1 726 411 21 0 0 chr11 18610224 18610272 -103233584 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 726 522 0 0 0 chr11 18610269 18610327 -103233529 + (GAA)n Simple_repeat Simple_repeat 3 60 0 1 726 1221 106 0 0 chr11 18610328 18610508 -103233348 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 726 799 265 165 31 chr11 18610637 18610964 -103232892 - MER121 Unknown Unknown -6 406 36 1 726 869 175 0 6 chr11 18611207 18611379 -103232477 + GA-rich Low_complexity Low_complexity 2 172 0 1 727 228 315 201 10 chr11 18613921 18614042 -103229814 - MER33 DNA MER1_type 0 324 186 1 727 378 0 0 0 chr11 18614042 18614084 -103229772 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 727 358 307 42 37 chr11 18614084 18614250 -103229606 - MER33 DNA MER1_type -139 185 3 1 727 233 298 0 0 chr11 18616277 18616334 -103227522 + L2b LINE L2 3317 3373 -2 1 727 309 295 28 21 chr11 18616916 18617058 -103226798 - B1F1 SINE Alu -5 144 2 1 727 783 0 0 0 chr11 18619188 18619275 -103224581 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 1 727 25 0 0 0 chr11 18619828 18619853 -103224003 + AT_rich Low_complexity Low_complexity 1 25 0 1 727 310 326 12 3 chr11 18620191 18620326 -103223530 + PB1D10 SINE Alu 12 149 0 1 727 31 26 0 0 chr11 18621352 18621390 -103222466 + AT_rich Low_complexity Low_complexity 1 38 0 1 727 938 249 0 37 chr11 18621390 18621607 -103222249 - B3 SINE B2 -7 209 1 1 727 495 285 42 0 chr11 18622277 18622421 -103221435 + MER45A DNA Tip100 27 176 -2 1 727 22 0 0 0 chr11 18622586 18622608 -103221248 + AT_rich Low_complexity Low_complexity 1 22 0 1 727 32 0 0 0 chr11 18624983 18625015 -103218841 + AT_rich Low_complexity Low_complexity 1 32 0 1 727 21 0 0 0 chr11 18625140 18625161 -103218695 + AT_rich Low_complexity Low_complexity 1 21 0 1 727 408 67 0 0 chr11 18625747 18625807 -103218049 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 727 520 340 109 4 chr11 18625886 18626134 -103217722 - MLT2C1 LTR ERVL -123 274 1 1 727 495 0 0 0 chr11 18626340 18626395 -103217461 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 727 260 292 71 71 chr11 18627746 18627901 -103215955 - L2 LINE L2 -475 2944 2790 1 727 648 297 65 44 chr11 18628151 18628489 -103215367 - MER2 DNA MER2_type 0 345 1 1 727 665 189 9 0 chr11 18628770 18628881 -103214975 - B3 SINE B2 -90 126 15 1 727 444 37 0 0 chr11 18628881 18628935 -103214921 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 1 727 345 343 105 21 chr11 18629259 18629402 -103214454 - MIR SINE MIR -1 261 107 1 727 968 24 72 0 chr11 18631144 18631310 -103212546 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1 727 392 319 149 59 chr11 18632191 18632607 -103211249 - MLT1F1 LTR MaLR -7 562 62 1 727 420 325 133 56 chr11 18632892 18633410 -103210446 + L1ME3B LINE L1 5567 6124 -116 1 727 337 337 59 24 chr11 18633576 18633746 -103210110 - MLT1G1 LTR MaLR -256 323 148 1 727 390 277 23 76 chr11 18633801 18633973 -103209883 - RSINE1 SINE B4 -1 164 2 1 727 1757 223 8 36 chr11 18634026 18634501 -103209355 - Lx7 LINE L1 -406 7290 6829 1 727 2442 239 36 12 chr11 18634499 18635105 -103208751 + Lx6 LINE L1 6824 7444 -16 1 727 241 176 39 0 chr11 18635126 18635177 -103208679 - Lx7 LINE L1 -858 6838 6786 1 727 217 383 0 24 chr11 18635382 18635393 -103208463 - ID4_ SINE ID 0 83 7 1 727 226 353 0 0 chr11 18635393 18635461 -103208395 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 1 727 545 157 118 0 chr11 18635661 18635763 -103208093 + B3 SINE B2 16 129 -66 1 727 246 312 57 3 chr11 18635934 18636137 -103207719 + Lx6 LINE L1 242 563 -7165 1 727 1543 201 21 63 chr11 18636296 18636908 -103206948 + Lx6 LINE L1 859 1430 -4447 1 727 1342 157 137 20 chr11 18636899 18637008 -103206848 + Lx6 LINE L1 1935 2074 -3806 1 727 630 0 0 0 chr11 18637008 18637078 -103206778 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 727 303 93 0 0 chr11 18637078 18637120 -103206736 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 727 1342 157 137 20 chr11 18637120 18637359 -103206497 + Lx6 LINE L1 2075 2324 -3556 1 727 3988 188 73 5 chr11 18637348 18638701 -103205155 + Lx6 LINE L1 4969 6426 -1034 1 727 648 112 92 0 chr11 18638701 18638799 -103205057 + U6 snRNA snRNA 1 107 0 1 727 6899 69 28 6 chr11 18638799 18639969 -103203887 + L1_Mus2 LINE L1 5380 6565 -1 1 727 828 0 0 0 chr11 18639969 18640061 -103203795 + (GAA)n Simple_repeat Simple_repeat 2 93 0 1 727 3317 271 68 105 chr11 18640061 18640863 -103202993 + L1_Mus2 LINE L1 6416 7265 -195 1 727 339 44 0 0 chr11 18640863 18640908 -103202948 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 727 3317 271 68 105 chr11 18640908 18641095 -103202761 + L1_Mus2 LINE L1 7266 7459 -1 1 727 264 248 68 131 chr11 18641201 18641377 -103202479 - MIRb SINE MIR -18 250 86 1 727 3123 31 2 44 chr11 18641433 18641840 -103202016 - RLTR10 LTR ERVK 0 390 1 1 727 238 302 147 28 chr11 18643571 18643680 -103200176 - MIRb SINE MIR -92 176 55 1 727 994 227 142 41 chr11 18643998 18644342 -103199514 - MTE2a LTR MaLR 0 379 1 1 727 266 295 0 0 chr11 18644962 18645040 -103198816 + ID2 SINE ID 4 81 -2 1 727 1119 86 0 0 chr11 18645056 18645230 -103198626 + (TC)n Simple_repeat Simple_repeat 2 175 0 1 727 189 154 0 0 chr11 18645518 18645557 -103198299 + CT-rich Low_complexity Low_complexity 1 39 0 1 727 513 0 0 0 chr11 18650500 18650557 -103193299 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 727 348 24 0 0 chr11 18650557 18650597 -103193259 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 727 23 0 0 0 chr11 18650794 18650817 -103193039 + AT_rich Low_complexity Low_complexity 1 23 0 1 727 801 0 0 0 chr11 18653550 18653639 -103190217 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 1 727 23 33 0 0 chr11 18655792 18655822 -103188034 + AT_rich Low_complexity Low_complexity 1 30 0 1 727 192 77 0 0 chr11 18656507 18656533 -103187323 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 1 727 25 31 0 0 chr11 18659222 18659254 -103184602 + AT_rich Low_complexity Low_complexity 1 32 0 1 727 223 50 0 104 chr11 18660399 18660466 -103183390 + T-rich Low_complexity Low_complexity 2 61 0 1 727 285 29 0 0 chr11 18660848 18660882 -103182974 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 727 575 246 29 73 chr11 18661759 18661965 -103181891 + B3A SINE B2 2 198 0 1 727 341 149 15 0 chr11 18664018 18664085 -103179771 + CT-rich Low_complexity Low_complexity 2 69 0 1 727 387 0 0 0 chr11 18664819 18664862 -103178994 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 727 290 212 17 70 chr11 18666983 18667155 -103176701 + (TA)n Simple_repeat Simple_repeat 1 163 0 1 727 577 182 118 0 chr11 18667333 18667443 -103176413 - B1_Mur4 SINE Alu 0 150 28 1 727 200 110 95 24 chr11 18668053 18668137 -103175719 + (TAAA)n Simple_repeat Simple_repeat 3 92 0 1 727 945 203 52 5 chr11 18668847 18669040 -103174816 - B3 SINE B2 -14 202 1 2 727 642 197 0 0 chr11 18669195 18669327 -103174529 + CT-rich Low_complexity Low_complexity 2 133 0 2 727 213 39 0 0 chr11 18669334 18669360 -103174496 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 2 727 798 109 0 8 chr11 18669768 18669897 -103173959 - Lx LINE L1 -3 6651 6524 2 727 472 347 36 0 chr11 18671103 18671270 -103172586 - MER5A DNA MER1_type 0 189 17 2 727 198 343 56 14 chr11 18671375 18671517 -103172339 + L3b LINE CR1 177 324 -158 2 727 673 22 22 0 chr11 18672164 18672255 -103171601 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 727 782 294 58 22 chr11 18672272 18672650 -103171206 - L1MA5 LINE L1 -369 5931 5532 2 727 1292 289 119 54 chr11 18672716 18673610 -103170246 - L1MA5 LINE L1 -879 5264 4313 2 727 39090 43 2 3 chr11 18673609 18680066 -103163790 - L1Md_T LINE L1 0 6585 41 2 727 1101 320 70 11 chr11 18680077 18680646 -103163210 - L1MA5 LINE L1 -1815 4328 3726 2 727 31712 108 16 0 chr11 18680650 18686723 -103157133 + L1_Mus1 LINE L1 392 6566 -1 2 727 1018 290 93 21 chr11 18686783 18687344 -103156512 - L1MA5 LINE L1 -2462 3681 3081 2 727 28017 108 55 18 chr11 18687353 18688886 -103154970 - L1_Mus3 LINE L1 0 6638 5238 2 727 3752 76 0 15 chr11 18688886 18689353 -103154503 + L1_Mus1 LINE L1 6108 6567 0 2 727 28017 131 21 43 chr11 18689353 18694116 -103149740 - L1_Mus3 LINE L1 -646 5237 403 2 727 721 238 0 52 chr11 18694164 18694181 -103149675 - B1_Mur2 SINE Alu 0 149 137 2 727 237 65 0 0 chr11 18694181 18694212 -103149644 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 727 721 238 0 52 chr11 18694212 18694349 -103149507 - B1_Mur2 SINE Alu -13 136 3 2 727 996 288 105 28 chr11 18694351 18694577 -103149279 - L1_Mur3 LINE L1 -2874 3006 2748 2 727 261 0 0 0 chr11 18694577 18694606 -103149250 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 727 996 288 105 28 chr11 18694606 18694996 -103148860 - L1_Mur3 LINE L1 -3133 2747 2342 2 727 266 237 17 17 chr11 18695898 18696018 -103147838 + (TA)n Simple_repeat Simple_repeat 1 120 0 2 727 585 86 0 0 chr11 18698349 18698442 -103145414 + (TTGG)n Simple_repeat Simple_repeat 3 95 0 2 727 3521 121 3 34 chr11 18700769 18701479 -103142377 + L1VL4 LINE L1 364 1045 -2514 2 727 507 209 0 43 chr11 18701558 18701673 -103142183 - B1F2 SINE Alu 0 149 40 2 727 324 228 0 0 chr11 18701676 18701790 -103142066 + CT-rich Low_complexity Low_complexity 2 115 0 2 727 306 185 0 53 chr11 18701796 18701853 -103142003 - B1_Mus2 SINE Alu -93 54 1 2 727 831 249 84 109 chr11 18701853 18702084 -103141772 - B4A SINE B4 -54 238 15 2 727 256 303 48 34 chr11 18702104 18702251 -103141605 - Lx8 LINE L1 -1134 6339 6191 2 727 539 255 36 73 chr11 18702259 18702424 -103141432 - U1 snRNA snRNA -5 160 2 2 727 312 263 83 10 chr11 18702446 18702542 -103141314 - RMER15-int LTR ERVL -2600 2399 2297 2 727 331 295 91 65 chr11 18702578 18702810 -103141046 - RMER15-int LTR ERVL -2859 2140 1903 2 727 2671 71 3 3 chr11 18702885 18703237 -103140619 + MTB_Mm LTR MaLR 1 352 -55 2 727 198 0 0 0 chr11 18703243 18703265 -103140591 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 727 3066 100 28 0 chr11 18703268 18703736 -103140120 + MusHAL1 LINE L1 184 664 -2048 2 727 9700 141 28 19 chr11 18703727 18705383 -103138473 + L1_Mm LINE L1 3801 5471 -412 2 727 2106 191 52 34 chr11 18705374 18705840 -103138016 + Lx LINE L1 6181 6654 0 2 727 1246 122 11 11 chr11 18705858 18706041 -103137815 + L1_Mm LINE L1 5447 5629 -254 2 727 1529 119 48 28 chr11 18706041 18706291 -103137565 + Lx LINE L1 6400 6654 0 2 727 2515 136 27 42 chr11 18706341 18706823 -103137033 - IAPLTR2_Mm LTR ERVK 0 475 1 2 727 59014 11 4 2 chr11 18706823 18713283 -103130573 - IAPEz-int LTR ERVK 0 6481 8 2 727 2681 128 31 46 chr11 18713283 18713765 -103130091 - IAPLTR2_Mm LTR ERVK 0 475 1 2 727 230 151 38 0 chr11 18713915 18713968 -103129888 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 727 275 284 20 31 chr11 18713975 18714073 -103129783 + MT2B LTR ERVL 167 263 -338 2 727 535 204 21 0 chr11 18714013 18714106 -103129750 + B1_Mur1 SINE Alu 48 142 -7 2 727 504 0 0 0 chr11 18715001 18715057 -103128799 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 727 459 0 0 0 chr11 18717764 18717815 -103126041 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 727 274 173 24 47 chr11 18718771 18718812 -103125044 + A-rich Low_complexity Low_complexity 3 42 0 2 727 2086 214 32 135 chr11 18718812 18719493 -103124363 + RMER19C LTR ERVK 1 611 0 2 727 1251 56 0 0 chr11 18719499 18719659 -103124197 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 2 727 363 23 0 0 chr11 18719660 18719704 -103124152 + (GGGA)n Simple_repeat Simple_repeat 1 44 0 2 727 274 173 24 47 chr11 18719704 18719738 -103124118 + A-rich Low_complexity Low_complexity 48 83 0 2 727 202 206 29 0 chr11 18721168 18721236 -103122620 + GA-rich Low_complexity Low_complexity 5 74 0 2 727 7799 115 33 52 chr11 18722047 18723390 -103120466 + Lx3C LINE L1 5658 6975 -1 2 727 39 38 0 0 chr11 18723397 18723450 -103120406 + AT_rich Low_complexity Low_complexity 1 53 0 2 727 201 288 0 67 chr11 18723607 18723726 -103120130 + T-rich Low_complexity Low_complexity 2 112 0 2 727 406 272 161 49 chr11 18724370 18724795 -103119061 + L1MDa LINE L1 1576 2093 -4540 2 727 261 267 50 64 chr11 18724932 18725072 -103118784 + L1_Rod LINE L1 2118 2255 -3592 2 727 209 200 0 0 chr11 18725115 18725160 -103118696 + GA-rich Low_complexity Low_complexity 2 46 0 2 727 264 259 143 0 chr11 18725162 18725351 -103118505 + L1M2 LINE L1 3051 3266 -2877 2 727 358 330 63 31 chr11 18725351 18725542 -103118314 - L1M4 LINE L1 -1508 4638 4442 2 727 5026 62 10 15 chr11 18725547 18726217 -103117639 - Lx3_Mus LINE L1 -8 7001 6335 2 727 3436 81 38 8 chr11 18726217 18726782 -103117074 + Lx3_Mus LINE L1 5551 6128 -881 2 727 488 357 106 10 chr11 18726827 18727138 -103116718 - Kanga1c DNA Tc2 -384 345 4 2 727 544 340 29 24 chr11 18727217 18727425 -103116431 + Charlie1b DNA MER1_type 3 211 -312 2 727 36 0 0 0 chr11 18727496 18727532 -103116324 + AT_rich Low_complexity Low_complexity 1 36 0 2 727 225 283 32 138 chr11 18727757 18727880 -103115976 + MT2B LTR ERVL 154 263 -338 2 727 519 314 21 14 chr11 18727778 18727920 -103115936 + B1F1 SINE Alu 7 149 0 2 727 651 205 16 0 chr11 18727968 18728095 -103115761 + B3 SINE B2 2 130 -86 2 727 797 265 140 45 chr11 18728512 18728804 -103115052 + MTEb LTR MaLR 60 379 0 2 727 1259 311 139 15 chr11 18728807 18729332 -103114524 + MTEb-int LTR MaLR 5 594 -986 2 727 788 291 66 21 chr11 18731073 18731606 -103112250 + L1M2 LINE L1 2624 3180 -2963 2 727 696 133 0 0 chr11 18731624 18731729 -103112127 + B2_Mm2 SINE B2 53 157 -38 2 727 284 0 0 27 chr11 18731730 18731767 -103112089 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 727 730 269 147 8 chr11 18731772 18732154 -103111702 + L1_Mur3 LINE L1 3777 4211 -1669 2 727 618 243 13 26 chr11 18732154 18732169 -103111687 + ID_B1 SINE B4 70 168 -56 2 727 908 126 22 0 chr11 18732169 18732304 -103111552 + B1_Mur4 SINE Alu 6 143 -7 2 727 351 0 0 0 chr11 18732311 18732350 -103111506 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 727 276 292 43 49 chr11 18732352 18732514 -103111342 + L1M2 LINE L1 4210 4370 -1477 2 727 220 311 0 16 chr11 18732760 18732822 -103111034 + CT-rich Low_complexity Low_complexity 3 63 0 2 727 800 329 31 31 chr11 18732909 18733169 -103110687 + MTD LTR MaLR 53 312 -107 2 727 459 0 0 0 chr11 18733287 18733338 -103110518 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 727 408 358 0 0 chr11 18733805 18733992 -103109864 - MMERGLN-int LTR ERV1 -2007 5549 5363 2 727 254 290 62 51 chr11 18734280 18734458 -103109398 - MMERGLN-int LTR ERV1 -3156 4450 4271 2 727 3443 30 0 137 chr11 18734461 18734966 -103108890 + RLTR10C LTR ERVK 1 436 0 2 727 1126 75 156 0 chr11 18734986 18735172 -103108684 - RLTR47_MM LTR ERV1 -317 215 1 2 727 530 161 0 0 chr11 18735172 18735253 -103108603 - B3 SINE B2 -124 92 12 2 727 387 235 135 35 chr11 18735253 18735494 -103108362 + L1M2 LINE L1 5019 5341 -802 2 727 2673 109 113 0 chr11 18735494 18735972 -103107884 + RLTR47_MM LTR ERV1 1 532 0 2 727 387 260 93 27 chr11 18735972 18736004 -103107852 + L1M2 LINE L1 5342 5373 -770 2 727 243 0 0 0 chr11 18737048 18737075 -103106781 + (A)n Simple_repeat Simple_repeat 1 27 0 2 727 335 380 21 11 chr11 18737282 18737468 -103106388 - MIR SINE MIR -74 188 1 2 727 664 320 63 20 chr11 18737626 18737881 -103105975 - B4A SINE B4 0 292 27 2 727 668 278 47 0 chr11 18738678 18738847 -103105009 + B3A SINE B2 3 179 -19 2 727 189 0 0 0 chr11 18739289 18739310 -103104546 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 727 198 0 0 0 chr11 18739310 18739331 -103104525 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 727 238 184 0 0 chr11 18739332 18739381 -103104475 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 727 403 269 48 28 chr11 18739408 18739553 -103104303 - RSINE1 SINE B4 -15 150 3 2 727 520 289 5 109 chr11 18740395 18740616 -103103240 - B3A SINE B2 0 198 1 2 727 392 345 115 0 chr11 18741697 18741888 -103101968 + MER58A DNA MER1_type 7 219 -5 2 727 197 297 105 42 chr11 18742917 18743012 -103100844 + MIRb SINE MIR 41 141 -127 2 728 293 169 14 0 chr11 18744164 18744199 -103099657 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 728 282 73 0 0 chr11 18744199 18744240 -103099616 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 728 293 169 14 0 chr11 18744240 18744275 -103099581 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 728 2487 97 24 0 chr11 18744390 18744762 -103099094 - Lx4A LINE L1 -1053 6005 5625 2 728 2667 126 29 0 chr11 18744755 18745199 -103098657 + Lx4A LINE L1 5187 5643 -234 2 728 1536 262 59 20 chr11 18745207 18745752 -103098104 - L1MB7 LINE L1 -52 6132 5567 2 728 702 276 24 48 chr11 18745765 18745974 -103097882 - RMER15 LTR ERVL -13 562 359 2 728 341 288 43 14 chr11 18746012 18746153 -103097703 - Lx8 LINE L1 -295 7178 7034 2 728 566 264 175 14 chr11 18746151 18746607 -103097249 - L1MB7 LINE L1 -612 5568 5040 2 728 21 36 0 0 chr11 18748074 18748102 -103095754 + AT_rich Low_complexity Low_complexity 1 28 0 2 728 1033 101 39 6 chr11 18748143 18748322 -103095534 - L1_Mus3 LINE L1 -2 6636 6452 2 728 204 111 0 0 chr11 18748412 18748448 -103095408 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 728 22 0 0 0 chr11 18749794 18749816 -103094040 + AT_rich Low_complexity Low_complexity 1 22 0 2 728 640 201 217 6 chr11 18751437 18751612 -103092244 - B3 SINE B2 0 216 5 2 728 450 0 0 0 chr11 18754132 18754182 -103089674 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 728 1430 146 8 0 chr11 18754261 18754501 -103089355 - Lx4A LINE L1 -406 6652 6411 3 728 2435 141 13 10 chr11 18754502 18754896 -103088960 + Lx4A LINE L1 6663 7057 -1 3 728 186 71 0 0 chr11 18754896 18754924 -103088932 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 3 728 479 318 45 35 chr11 18755322 18755524 -103088332 + MLT1A1 LTR MaLR 29 232 -176 3 728 361 317 128 36 chr11 18757060 18757561 -103086295 + L1MC4 LINE L1 7352 7898 -144 3 728 319 324 69 21 chr11 18757816 18757961 -103085895 + B4 SINE B4 53 204 -88 3 728 763 160 0 30 chr11 18757863 18757998 -103085858 + B1_Mus2 SINE Alu 17 147 0 3 728 1062 92 6 17 chr11 18758003 18758179 -103085677 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 3 728 820 151 23 0 chr11 18758199 18758371 -103085485 + GA-rich Low_complexity Low_complexity 3 178 0 3 728 1083 89 0 32 chr11 18758373 18758559 -103085297 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 728 212 219 12 0 chr11 18758567 18758649 -103085207 + GA-rich Low_complexity Low_complexity 2 84 0 3 728 2980 50 57 0 chr11 18758696 18759080 -103084776 - L1Md_F2 LINE L1 -1 6581 6176 3 728 619 263 207 54 chr11 18759988 18760302 -103083554 - MLT1B LTR MaLR -28 362 1 3 728 182 118 0 29 chr11 18760535 18760570 -103083286 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 3 728 2583 297 63 18 chr11 18761340 18762344 -103081512 - Lx8 LINE L1 -257 7216 6168 3 728 1114 291 34 50 chr11 18762843 18763345 -103080511 + RMER15-int LTR ERVL 714 1207 -3792 3 728 383 308 110 25 chr11 18763377 18763577 -103080279 + RMER15-int LTR ERVL 1270 1486 -3513 3 728 1652 278 71 74 chr11 18763734 18763943 -103079913 + RMER15-int LTR ERVL 4221 4456 -543 3 728 271 0 0 49 chr11 18763943 18763984 -103079872 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 728 1652 278 71 74 chr11 18763984 18764520 -103079336 + RMER15-int LTR ERVL 4457 4964 -35 3 728 36 0 0 0 chr11 18764605 18764641 -103079215 + AT_rich Low_complexity Low_complexity 1 36 0 3 728 595 252 137 59 chr11 18764743 18765013 -103078843 + RMER15 LTR ERVL 275 565 -10 3 728 237 149 0 0 chr11 18765146 18765193 -103078663 - Lx8 LINE L1 -3 7470 7424 3 728 208 299 81 0 chr11 18765222 18765309 -103078547 + L2 LINE L2 2329 2422 -997 3 728 204 40 0 0 chr11 18765853 18765878 -103077978 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 728 228 203 50 17 chr11 18766477 18766537 -103077319 + LTR33A_ LTR ERVL 444 505 -26 3 728 21 36 0 0 chr11 18767340 18767368 -103076488 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 24 32 0 0 chr11 18768461 18768492 -103075364 + AT_rich Low_complexity Low_complexity 1 31 0 3 728 344 326 21 0 chr11 18768569 18768664 -103075192 + B1F2 SINE Alu 2 98 -51 3 728 204 97 0 0 chr11 18769865 18769896 -103073960 + (C)n Simple_repeat Simple_repeat 1 31 0 3 728 768 22 0 0 chr11 18772132 18772222 -103071634 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 728 658 0 12 12 chr11 18772265 18772348 -103071508 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 728 180 0 0 0 chr11 18775420 18775440 -103068416 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 3 728 213 39 0 0 chr11 18776956 18776982 -103066874 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 3 728 261 265 0 0 chr11 18777701 18777769 -103066087 + G-rich Low_complexity Low_complexity 1 68 0 3 728 21 0 0 0 chr11 18777868 18777889 -103065967 + GC_rich Low_complexity Low_complexity 1 21 0 3 728 310 355 0 0 chr11 18778973 18779080 -103064776 + C-rich Low_complexity Low_complexity 1 107 0 3 728 24 53 0 0 chr11 18779160 18779198 -103064658 + AT_rich Low_complexity Low_complexity 1 38 0 3 728 965 72 7 0 chr11 18779365 18779504 -103064352 + (TC)n Simple_repeat Simple_repeat 2 141 0 3 728 577 38 25 0 chr11 18781087 18781167 -103062689 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 728 189 121 0 0 chr11 18781937 18781970 -103061886 + (A)n Simple_repeat Simple_repeat 1 33 0 3 728 191 114 23 0 chr11 18784578 18784622 -103059234 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 3 728 230 95 24 0 chr11 18786452 18786494 -103057362 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 3 728 22 0 0 0 chr11 18787207 18787229 -103056627 + AT_rich Low_complexity Low_complexity 1 22 0 3 728 890 134 0 7 chr11 18787444 18787579 -103056277 - B1_Mur4 SINE Alu -1 149 16 3 728 185 266 33 132 chr11 18788201 18788292 -103055564 - L3 LINE CR1 -308 4181 4100 3 728 500 283 163 22 chr11 18788705 18788889 -103054967 - ID_B1 SINE B4 -13 211 2 3 728 384 77 0 0 chr11 18789566 18789618 -103054238 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 728 309 26 0 0 chr11 18789949 18789987 -103053869 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 728 1321 95 26 26 chr11 18790422 18790617 -103053239 - B2_Mm2 SINE B2 0 195 1 3 728 281 122 26 26 chr11 18790697 18790773 -103053083 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 728 591 177 12 6 chr11 18790800 18790965 -103052891 + (TG)n Simple_repeat Simple_repeat 2 167 0 3 728 265 289 109 55 chr11 18791679 18791807 -103052049 + B4 SINE B4 150 284 -8 3 728 189 0 0 0 chr11 18792887 18792908 -103050948 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 3 728 837 276 44 13 chr11 18793180 18793216 -103050640 + B4A SINE B4 42 80 -212 3 728 648 0 0 0 chr11 18793216 18793288 -103050568 + (CAAAA)n Simple_repeat Simple_repeat 1 72 0 3 728 837 276 44 13 chr11 18793288 18793479 -103050377 + B4A SINE B4 81 275 -17 3 728 1030 116 13 33 chr11 18793606 18793758 -103050098 + B1_Mur3 SINE Alu 1 149 0 3 728 861 10 0 0 chr11 18794081 18794182 -103049674 - L1Md_A LINE L1 0 6582 6482 3 728 1149 90 96 6 chr11 18794484 18794662 -103049194 + URR1A DNA MER1_type 33 226 0 3 728 448 215 114 65 chr11 18794502 18794686 -103049170 - CYRA11_Mm Unknown Y-chromosome -272 345 153 3 728 368 208 63 126 chr11 18794852 18794995 -103048861 + MT2B LTR ERVL 131 264 -337 3 728 807 175 0 7 chr11 18794889 18795027 -103048829 + B1_Mur4 SINE Alu 10 146 -4 3 728 594 0 0 0 chr11 18795036 18795102 -103048754 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 728 454 233 74 49 chr11 18795426 18795548 -103048308 - B1_Mur1 SINE Alu -1 148 24 3 728 191 167 0 23 chr11 18795562 18795605 -103048251 + CT-rich Low_complexity Low_complexity 4 45 0 3 728 683 299 56 33 chr11 18795624 18795838 -103048018 - ID_B1 SINE B4 0 224 6 3 728 933 277 44 88 chr11 18796121 18796600 -103047256 + L1MB8 LINE L1 5720 6177 -1 3 728 231 36 0 0 chr11 18797372 18797400 -103046456 + (T)n Simple_repeat Simple_repeat 1 28 0 3 728 275 268 58 18 chr11 18800264 18800435 -103043421 + RMER17A2 LTR ERVK 210 387 -519 3 728 636 14 0 0 chr11 18800557 18800630 -103043226 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 728 198 0 0 0 chr11 18800763 18800785 -103043071 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 728 189 0 0 0 chr11 18801386 18801407 -103042449 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 728 236 30 30 0 chr11 18801407 18801439 -103042417 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 728 207 69 0 0 chr11 18803295 18803324 -103040532 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 3 728 618 207 112 0 chr11 18803330 18803446 -103040410 - B1_Mus2 SINE Alu -17 130 2 3 728 504 0 0 0 chr11 18806074 18806130 -103037726 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 728 825 278 62 95 chr11 18806327 18806685 -103037171 + MTEa LTR MaLR 6 351 -28 3 728 334 62 62 0 chr11 18806691 18806755 -103037101 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 3 728 23 92 0 0 chr11 18806914 18806979 -103036877 + AT_rich Low_complexity Low_complexity 1 65 0 3 728 192 241 74 0 chr11 18807696 18807750 -103036106 + L2a LINE L2 2964 3021 -405 3 728 627 196 0 0 chr11 18807809 18807972 -103035884 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 728 264 200 21 10 chr11 18807993 18808089 -103035767 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 728 1532 161 115 44 chr11 18808891 18809138 -103034718 + RMER1C Other Other 952 1194 -148 3 728 1052 73 13 0 chr11 18809138 18809288 -103034568 + (TTTC)n Simple_repeat Simple_repeat 3 154 0 3 728 1532 161 115 44 chr11 18809288 18809379 -103034477 + RMER1C Other Other 1195 1313 -29 3 728 680 159 0 7 chr11 18809395 18809534 -103034322 + (TG)n Simple_repeat Simple_repeat 1 138 0 3 728 513 270 168 0 chr11 18809543 18809680 -103034176 - RSINE1 SINE B4 -3 162 3 3 728 390 147 0 0 chr11 18810524 18810592 -103033264 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 728 264 59 0 0 chr11 18810592 18810626 -103033230 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 728 294 308 43 0 chr11 18814878 18814995 -103028861 - MIR SINE MIR -98 164 43 3 728 183 125 0 0 chr11 18815530 18815562 -103028294 + L2a LINE L2 3395 3426 0 3 728 437 273 55 85 chr11 18815624 18815637 -103028219 - B4 SINE B4 -70 222 184 3 728 704 200 0 0 chr11 18815637 18815752 -103028104 - B1_Mur2 SINE Alu -32 117 3 3 728 437 273 55 85 chr11 18815752 18815788 -103028068 - B4 SINE B4 -70 183 64 3 728 387 89 0 0 chr11 18816472 18816528 -103027328 + (CAA)n Simple_repeat Simple_repeat 2 57 0 3 728 522 119 0 0 chr11 18817244 18817328 -103026528 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 728 22 0 0 0 chr11 18817843 18817865 -103025991 + GC_rich Low_complexity Low_complexity 1 22 0 3 728 248 70 0 23 chr11 18819092 18819136 -103024720 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 728 866 158 7 7 chr11 18819138 18819278 -103024578 - B1_Mus1 SINE Alu -8 140 1 3 728 1050 205 71 5 chr11 18819824 18819849 -103024007 - B3 SINE B2 -7 209 183 3 728 396 0 0 0 chr11 18819849 18819893 -103023963 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 728 1050 205 71 5 chr11 18819893 18820063 -103023793 - B3 SINE B2 -34 182 1 3 728 198 333 38 13 chr11 18820063 18820142 -103023714 + MIRc SINE MIR 82 162 -106 3 728 534 234 28 0 chr11 18821338 18821445 -103022411 + RSINE1 SINE B4 5 114 -51 3 728 636 67 0 0 chr11 18821453 18821543 -103022313 + (GA)n Simple_repeat Simple_repeat 2 91 0 3 728 192 125 0 0 chr11 18822924 18822956 -103020900 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 3 728 207 0 0 0 chr11 18823772 18823795 -103020061 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 728 1219 37 0 0 chr11 18823795 18823931 -103019925 - B1_Mus2 SINE Alu -10 137 2 3 728 276 304 154 70 chr11 18824519 18824532 -103019324 + B4 SINE B4 84 145 -147 3 728 513 223 0 97 chr11 18824532 18824656 -103019200 + PB1D10 SINE Alu 6 117 0 4 728 276 304 154 70 chr11 18824656 18824675 -103019181 + B4 SINE B4 146 252 -40 3 728 215 305 36 54 chr11 18824704 18824815 -103019041 + L2 LINE L2 2634 2742 -677 4 728 252 0 0 0 chr11 18826336 18826364 -103017492 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 728 195 259 123 0 chr11 18826671 18826752 -103017104 + MIR SINE MIR 108 198 -64 4 728 360 0 0 0 chr11 18827125 18827165 -103016691 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 728 230 250 14 56 chr11 18828500 18828572 -103015284 + MER5A1 DNA MER1_type 97 165 -1 4 728 838 167 72 0 chr11 18829136 18829274 -103014582 - B1_Mur2 SINE Alu 0 149 2 4 728 411 21 0 0 chr11 18832541 18832589 -103011267 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 728 210 364 0 0 chr11 18833376 18833453 -103010403 - ID4_ SINE ID -2 81 5 4 728 297 324 9 35 chr11 18833461 18833576 -103010280 - PB1D10 SINE Alu -5 112 1 4 728 911 257 147 28 chr11 18833860 18834180 -103009676 + MTD LTR MaLR 42 399 -20 4 728 21 0 0 0 chr11 18834323 18834344 -103009512 + AT_rich Low_complexity Low_complexity 1 21 0 4 728 279 267 103 37 chr11 18834604 18834740 -103009116 - B1_Mur4 SINE Alu -5 145 1 4 728 353 206 14 0 chr11 18835130 18835203 -103008653 + ID4 SINE ID 1 74 -9 4 728 253 279 23 11 chr11 18835203 18835217 -103008639 + B4 SINE B4 1 88 -204 4 728 344 246 0 0 chr11 18836269 18836334 -103007522 + PB1D7 SINE Alu 7 71 -49 4 728 255 61 0 0 chr11 18836424 18836457 -103007399 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 728 1127 88 0 13 chr11 18836698 18836847 -103007009 + B1_Mus1 SINE Alu 2 148 0 4 728 525 135 0 0 chr11 18836851 18836940 -103006916 + (GAAAA)n Simple_repeat Simple_repeat 2 90 0 4 728 186 171 0 0 chr11 18837504 18837539 -103006317 + MIR SINE MIR 26 60 -148 4 728 1012 122 17 0 chr11 18838491 18838663 -103005193 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 4 728 297 0 0 0 chr11 18840202 18840235 -103003621 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 728 829 135 12 37 chr11 18840235 18840386 -103003470 + URR1A DNA MER1_type 79 226 0 4 728 240 158 0 0 chr11 18844764 18844821 -102999035 + T-rich Low_complexity Low_complexity 1 57 0 4 728 573 15 0 0 chr11 18847207 18847273 -102996583 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 728 671 181 0 0 chr11 18848247 18848363 -102995493 - B1_Mur2 SINE Alu -28 121 6 4 728 229 295 143 0 chr11 18848755 18848768 -102995088 + ID_B1 SINE B4 57 176 -48 4 728 234 304 65 0 chr11 18848768 18848860 -102994996 + B1F1 SINE Alu 1 98 -51 4 728 396 0 0 0 chr11 18849911 18849955 -102993901 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 728 450 281 14 28 chr11 18850648 18850791 -102993065 + ID_B1 SINE B4 84 224 0 4 728 237 65 0 0 chr11 18852179 18852210 -102991646 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 728 575 81 12 0 chr11 18852222 18852308 -102991548 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 728 270 0 0 0 chr11 18853223 18853253 -102990603 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 728 2110 65 0 14 chr11 18854233 18854512 -102989344 + L1Md_F2 LINE L1 6308 6582 0 4 728 309 281 25 8 chr11 18855124 18855246 -102988610 - Tigger7 DNA MER2_type -90 2401 2278 4 728 290 274 87 19 chr11 18855248 18855352 -102988504 - Tigger7 DNA MER2_type -2375 116 6 4 728 881 257 70 131 chr11 18855509 18855572 -102988284 + RCHARR1 DNA MER1_type 2 74 -900 4 728 207 0 0 0 chr11 18855572 18855595 -102988261 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 728 881 257 70 131 chr11 18855595 18856090 -102987766 + RCHARR1 DNA MER1_type 75 526 -448 4 728 375 296 49 7 chr11 18856107 18856250 -102987606 + RSINE1 SINE B4 3 151 -14 4 728 921 201 18 174 chr11 18856287 18856679 -102987177 + RCHARR1 DNA MER1_type 546 876 -98 4 728 276 266 43 26 chr11 18856952 18857068 -102986788 + PB1D7 SINE Alu 1 118 -2 4 728 23 0 0 0 chr11 18857446 18857469 -102986387 + GC_rich Low_complexity Low_complexity 1 23 0 4 728 315 286 0 32 chr11 18859283 18859377 -102984479 - RSINE1 SINE B4 -22 143 53 4 728 578 185 0 8 chr11 18860221 18860352 -102983504 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 728 435 52 0 0 chr11 18860631 18860689 -102983167 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 728 504 59 0 0 chr11 18862207 18862275 -102981581 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 728 23 33 0 0 chr11 18865421 18865451 -102978405 + AT_rich Low_complexity Low_complexity 1 30 0 4 728 731 232 0 0 chr11 18865554 18865696 -102978160 - B1_Mur1 SINE Alu -6 143 2 4 728 1909 206 33 0 chr11 18866586 18866950 -102976906 + Lx7 LINE L1 6534 6909 -787 4 728 467 148 16 12 chr11 18866950 18867047 -102976809 + Lx7 LINE L1 7511 7591 -105 4 728 254 136 29 57 chr11 18868053 18868123 -102975733 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 728 534 31 0 0 chr11 18870975 18871039 -102972817 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 728 571 131 35 70 chr11 18871042 18871157 -102972699 - B2_Mm2 SINE B2 -65 130 20 4 728 279 0 0 0 chr11 18871940 18871971 -102971885 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 11 630 230 13 26 chr11 18874239 18874391 -102969465 + B1_Mur4 SINE Alu 1 150 0 4 729 450 83 0 0 chr11 18874392 18874464 -102969392 + (CAAAA)n Simple_repeat Simple_repeat 1 72 0 4 729 577 202 0 46 chr11 18874486 18874616 -102969240 + RSINE1 SINE B4 11 134 -31 4 729 663 265 0 0 chr11 18875518 18875665 -102968191 + B1_Mus2 SINE Alu 1 147 0 4 729 535 305 23 32 chr11 18876501 18876721 -102967135 - ID_B1 SINE B4 -2 222 5 4 729 629 328 36 9 chr11 18876773 18877104 -102966752 + MER47B DNA MER2_type 12 417 -1 4 729 1705 209 19 48 chr11 18877333 18877750 -102966106 + MTD LTR MaLR 7 411 -8 4 729 693 278 114 65 chr11 18878867 18879332 -102964524 + Charlie4a DNA MER1_type 21 508 0 4 729 629 76 11 0 chr11 18881961 18882053 -102961803 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 4 729 213 205 0 0 chr11 18882577 18882616 -102961240 + CT-rich Low_complexity Low_complexity 1 39 0 4 729 921 182 193 0 chr11 18882923 18883104 -102960752 - B3 SINE B2 0 216 1 4 729 348 64 0 0 chr11 18883203 18883250 -102960606 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 729 396 0 0 0 chr11 18884753 18884797 -102959059 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 729 819 230 5 30 chr11 18886215 18886412 -102957444 - B3A SINE B2 -1 197 6 4 729 258 32 0 0 chr11 18887225 18887256 -102956600 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 729 293 231 13 13 chr11 18887831 18887910 -102955946 - ID4 SINE ID -3 80 2 4 729 247 262 26 88 chr11 18891470 18891583 -102952273 + Charlie24 DNA MER1_type 2344 2449 -1 4 729 405 243 96 31 chr11 18892461 18892475 -102951381 - ID_B1 SINE B4 -47 245 185 4 729 485 217 96 40 chr11 18892475 18892600 -102951256 - B1F SINE Alu 0 149 18 4 729 405 243 96 31 chr11 18892600 18892621 -102951235 - ID_B1 SINE B4 -47 184 78 4 729 239 333 81 0 chr11 18892795 18892906 -102950950 + L2b LINE L2 3251 3370 -5 4 729 198 91 0 0 chr11 18893356 18893389 -102950467 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 729 632 232 32 0 chr11 18893422 18893547 -102950309 - B3A SINE B2 -69 129 1 4 729 198 0 0 0 chr11 18893743 18893765 -102950091 + (GGAA)n Simple_repeat Simple_repeat 2 23 0 4 729 1309 244 20 22 chr11 18894155 18894510 -102949346 + MTD LTR MaLR 20 416 -3 4 729 389 20 0 20 chr11 18895743 18895794 -102948062 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 4 729 931 231 19 9 chr11 18895934 18896148 -102947708 + B3 SINE B2 1 216 0 4 729 450 0 0 0 chr11 18896343 18896393 -102947463 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 729 273 300 41 98 chr11 18896400 18896522 -102947334 - B3 SINE B2 -30 186 72 4 729 400 226 188 31 chr11 18896681 18896809 -102947047 - B1_Mur2 SINE Alu -1 148 1 4 729 278 235 208 30 chr11 18898275 18898376 -102945480 + PB1 SINE Alu 2 120 -7 4 729 396 40 0 0 chr11 18898376 18898426 -102945430 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 4 729 513 0 0 0 chr11 18898973 18899030 -102944826 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 729 496 220 119 0 chr11 18899088 18899206 -102944650 - B1_Mur1 SINE Alu -17 132 1 4 729 281 113 0 70 chr11 18899217 18899303 -102944553 + T-rich Low_complexity Low_complexity 1 80 0 4 729 265 200 45 30 chr11 18899315 18899382 -102944474 - B1F1 SINE Alu -70 79 12 4 729 1006 151 196 0 chr11 18900420 18900599 -102943257 + B3 SINE B2 2 215 -1 4 729 337 278 44 113 chr11 18901312 18901445 -102942411 - MurSatRep1 Unknown Unknown -1824 313 194 4 729 1146 146 126 0 chr11 18901445 18901644 -102942212 + URR1A DNA MER1_type 3 226 0 4 729 337 278 44 113 chr11 18901644 18901713 -102942143 - MurSatRep1 Unknown Unknown -1944 193 125 4 729 27 49 0 0 chr11 18903721 18903762 -102940094 + AT_rich Low_complexity Low_complexity 1 41 0 4 729 213 39 0 0 chr11 18904439 18904465 -102939391 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 729 712 161 28 35 chr11 18904465 18904597 -102939259 - B1_Mus1 SINE Alu -9 139 8 4 729 307 293 12 12 chr11 18904781 18904864 -102938992 - ID4_ SINE ID 0 83 1 4 729 1116 184 23 33 chr11 18904893 18905107 -102938749 - B3 SINE B2 0 216 5 4 729 183 50 23 70 chr11 18908472 18908515 -102935341 + (ATATG)n Simple_repeat Simple_repeat 2 42 0 4 729 621 0 0 0 chr11 18908531 18908600 -102935256 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 4 729 414 0 0 0 chr11 18911772 18911818 -102932038 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 729 225 0 0 0 chr11 18912400 18912425 -102931431 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 729 587 71 12 0 chr11 18912426 18912511 -102931345 + (GA)n Simple_repeat Simple_repeat 2 87 0 4 729 180 0 0 0 chr11 18915125 18915145 -102928711 + (A)n Simple_repeat Simple_repeat 1 20 0 4 729 273 119 0 0 chr11 18918528 18918570 -102925286 + (A)n Simple_repeat Simple_repeat 1 42 0 5 729 224 100 25 0 chr11 18918770 18918810 -102925046 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 729 233 164 0 47 chr11 18919519 18919583 -102924273 + T-rich Low_complexity Low_complexity 1 61 0 5 729 221 159 0 0 chr11 18922400 18922444 -102921412 + A-rich Low_complexity Low_complexity 1 44 0 5 729 438 20 0 0 chr11 18922983 18923034 -102920822 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 729 396 0 0 0 chr11 18924739 18924783 -102919073 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 729 546 174 53 35 chr11 18929361 18929474 -102914382 - PB1D9 SINE Alu 0 120 6 5 729 346 238 50 0 chr11 18929414 18929494 -102914362 - B4 SINE B4 -142 150 67 5 729 728 168 0 44 chr11 18929815 18929952 -102913904 - B1_Mur3 SINE Alu -16 133 3 5 729 228 137 0 0 chr11 18930637 18930688 -102913168 + (T)n Simple_repeat Simple_repeat 1 51 0 5 729 511 266 51 19 chr11 18931095 18931137 -102912719 - RSINE1 SINE B4 0 165 126 5 729 1290 25 0 0 chr11 18931137 18931295 -102912561 + (TG)n Simple_repeat Simple_repeat 2 159 0 5 729 511 266 51 19 chr11 18931295 18931409 -102912447 - RSINE1 SINE B4 -40 125 5 5 729 782 130 51 121 chr11 18932377 18932534 -102911322 - B1_Mus1 SINE Alu 0 148 3 5 729 21 0 0 0 chr11 18933800 18933821 -102910035 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 291 54 0 0 chr11 18935173 18935210 -102908646 + (CGTG)n Simple_repeat Simple_repeat 4 40 0 5 729 1143 144 119 0 chr11 18936660 18936861 -102906995 + URR1B DNA MER1_type 1 225 0 5 729 189 74 0 0 chr11 18936891 18936918 -102906938 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 5 729 189 0 0 0 chr11 18936939 18936960 -102906896 + (CCA)n Simple_repeat Simple_repeat 2 22 0 5 729 312 346 9 9 chr11 18936963 18937071 -102906785 + RSINE1 SINE B4 4 111 -54 5 729 212 163 0 0 chr11 18940563 18940606 -102903250 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 729 5481 210 79 15 chr11 18941130 18942876 -102900980 + Lx6 LINE L1 4761 6637 -1059 5 729 194 0 0 37 chr11 18942925 18942952 -102900904 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 729 444 248 210 5 chr11 18943494 18943689 -102900167 - Lx7 LINE L1 -263 7433 7199 5 729 954 311 80 72 chr11 18944442 18945402 -102898454 - L1MCb LINE L1 -2242 4322 3355 5 729 394 286 41 58 chr11 18945556 18945727 -102898129 - Lx8 LINE L1 -1571 5902 5735 5 729 898 163 11 6 chr11 18945742 18945921 -102897935 + CT-rich Low_complexity Low_complexity 1 180 0 5 729 252 0 0 0 chr11 18945921 18945949 -102897907 + (TTCC)n Simple_repeat Simple_repeat 4 31 0 5 729 343 0 24 0 chr11 18945949 18945991 -102897865 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 729 503 277 76 8 chr11 18945991 18946122 -102897734 - B1_Mur2 SINE Alu -5 144 5 5 729 910 307 107 62 chr11 18946122 18946748 -102897108 - Lx8 LINE L1 -137 5743 5090 5 729 933 304 55 10 chr11 18947166 18947590 -102896266 - L1M2 LINE L1 -1035 5105 4663 5 729 1016 262 119 28 chr11 18947592 18948190 -102895666 - L1MCb LINE L1 -3187 3377 2726 5 729 336 325 55 48 chr11 18948430 18948595 -102895261 - L1MCb LINE L1 -5171 874 709 5 729 260 269 0 0 chr11 18948647 18948725 -102895131 - L1MCb LINE L1 -5454 591 514 5 729 813 199 24 18 chr11 18948939 18949108 -102894748 - URR1A DNA MER1_type 0 226 57 5 729 486 0 0 0 chr11 18950191 18950245 -102893611 + (GGA)n Simple_repeat Simple_repeat 1 54 0 5 729 663 48 0 0 chr11 18951393 18951476 -102892380 + (TTC)n Simple_repeat Simple_repeat 3 85 0 5 729 459 0 0 0 chr11 18951476 18951527 -102892329 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 729 315 0 0 0 chr11 18952405 18952440 -102891416 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 729 235 242 80 10 chr11 18952481 18952581 -102891275 - MER113 DNA MER1_type -125 396 290 5 729 711 196 0 0 chr11 18954925 18955073 -102888783 + GA-rich Low_complexity Low_complexity 1 148 0 5 729 23 33 0 0 chr11 18955554 18955584 -102888272 + AT_rich Low_complexity Low_complexity 1 30 0 5 729 212 273 12 38 chr11 18957820 18957900 -102885956 - L3 LINE CR1 -1647 2842 2765 5 729 558 139 319 7 chr11 18958681 18958819 -102885037 - MTEb LTR MaLR -57 322 142 5 729 3352 210 33 8 chr11 18958834 18959550 -102884306 + RMER1B Other Other 15 1066 0 5 729 229 264 36 65 chr11 18959908 18960046 -102883810 - Lx8 LINE L1 -6 7467 7334 5 729 282 266 0 0 chr11 18960046 18960125 -102883731 - RMER15 LTR ERVL -105 470 392 5 729 704 222 209 4 chr11 18960126 18960361 -102883495 - Lx8 LINE L1 -219 7254 6972 5 729 260 155 102 17 chr11 18960410 18960453 -102883403 - MTE2a LTR MaLR 0 379 332 5 729 245 287 0 122 chr11 18960453 18960500 -102883356 + B2_Mm2 SINE B2 1 45 -150 5 729 204 40 0 0 chr11 18960500 18960525 -102883331 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 729 245 287 0 122 chr11 18960525 18960584 -102883272 + B2_Mm2 SINE B2 46 94 -101 5 729 739 190 23 102 chr11 18961020 18961196 -102882660 + B3 SINE B2 49 210 -6 5 729 343 181 0 41 chr11 18961711 18961809 -102882047 + (TATG)n Simple_repeat Simple_repeat 4 97 0 5 729 3749 20 2 0 chr11 18961838 18962233 -102881623 + MTA_Mm LTR MaLR 1 396 0 5 729 226 289 0 0 chr11 18962237 18962289 -102881567 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 729 21 36 0 0 chr11 18962368 18962396 -102881460 + AT_rich Low_complexity Low_complexity 1 28 0 5 729 593 169 126 37 chr11 18962396 18962531 -102881325 + B1_Mur1 SINE Alu 1 147 -2 5 729 851 129 29 12 chr11 18962532 18962704 -102881152 + GA-rich Low_complexity Low_complexity 4 178 0 5 729 604 177 19 25 chr11 18962704 18962811 -102881045 + polypurine Low_complexity Low_complexity 1 108 0 5 729 1041 112 6 22 chr11 18962811 18962994 -102880862 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 729 604 177 19 25 chr11 18962994 18963048 -102880808 + polypurine Low_complexity Low_complexity 109 161 0 5 729 396 0 0 0 chr11 18963048 18963092 -102880764 + (CAGG)n Simple_repeat Simple_repeat 4 47 0 5 729 1269 197 148 21 chr11 18963105 18963437 -102880419 + ORR1D1 LTR MaLR 1 374 0 5 729 304 353 0 0 chr11 18963502 18963604 -102880252 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 729 252 255 40 30 chr11 18964074 18964175 -102879681 + Charlie7 DNA MER1_type 1915 2016 -596 5 729 2579 198 69 16 chr11 18964176 18964871 -102878985 + Lx7 LINE L1 5459 6189 -1507 5 729 463 216 17 17 chr11 18964875 18965054 -102878802 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 729 6287 207 74 32 chr11 18965054 18966515 -102877341 + Lx7 LINE L1 6175 7696 0 5 729 952 49 0 8 chr11 18968731 18968854 -102875002 + B1_Mus2 SINE Alu 26 147 0 5 729 204 67 0 0 chr11 18968854 18968884 -102874972 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 5 729 300 111 0 0 chr11 18969591 18969636 -102874220 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 729 201 74 0 0 chr11 18969636 18969662 -102874194 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 729 201 74 0 0 chr11 18969924 18969951 -102873905 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 5 729 405 172 366 0 chr11 18970586 18970679 -102873177 - RSINE1 SINE B4 -11 154 28 5 729 3491 270 115 21 chr11 18970708 18970802 -102873054 - Lx8 LINE L1 -10 7463 7349 5 729 341 22 22 0 chr11 18970802 18970848 -102873008 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 729 237 108 0 0 chr11 18970857 18970894 -102872962 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 729 3491 270 115 21 chr11 18970894 18971864 -102871992 - Lx8 LINE L1 -133 7340 6291 5 729 4702 60 0 24 chr11 18971864 18972442 -102871414 + LTRIS2 LTR ERV1 1 564 0 5 729 3491 270 115 21 chr11 18972442 18972530 -102871326 - Lx8 LINE L1 -1183 6290 6191 5 729 1125 74 0 0 chr11 18972688 18972823 -102871033 + B1_Mus1 SINE Alu 5 139 -9 5 729 225 0 0 0 chr11 18972823 18972848 -102871008 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 729 502 172 0 15 chr11 18972857 18972987 -102870869 + GA-rich Low_complexity Low_complexity 2 129 0 5 729 795 176 42 7 chr11 18972990 18973133 -102870723 + B1_Mur3 SINE Alu 1 148 -1 5 729 330 67 0 0 chr11 18974461 18974506 -102869350 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 729 21 0 0 0 chr11 18974755 18974776 -102869080 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 189 0 0 0 chr11 18974817 18974838 -102869018 + (T)n Simple_repeat Simple_repeat 1 21 0 5 729 254 288 13 27 chr11 18975158 18975233 -102868623 + B4A SINE B4 2 75 -217 5 729 537 237 148 41 chr11 18975974 18976264 -102867592 - RMER10A LTR ERVL 0 442 122 5 729 269 221 58 105 chr11 18976339 18976425 -102867431 - RLTR19-int LTR ERVK -1818 4319 4238 5 729 511 242 54 18 chr11 18976633 18976801 -102867055 - RMER17C-int LTR ERVK -378 2860 2687 5 729 387 0 0 0 chr11 18976813 18976856 -102867000 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 729 998 168 57 118 chr11 18976922 18977219 -102866637 - RLTR19-int LTR ERVK -2350 3787 3509 5 729 735 271 73 143 chr11 18977227 18978088 -102865768 - RLTR19-int LTR ERVK -3144 2993 1859 5 729 291 162 0 222 chr11 18978126 18978261 -102865595 - RLTR19-int LTR ERVK -3442 2080 1976 5 729 407 220 33 0 chr11 18978613 18978704 -102865152 - RSINE1 SINE B4 -28 137 44 5 729 288 140 60 0 chr11 18978705 18978755 -102865101 - Lx8 LINE L1 -672 6801 6749 5 729 401 338 65 82 chr11 18978759 18979111 -102864745 - MTE-int LTR MaLR -675 905 560 5 729 620 340 50 12 chr11 18979244 18979485 -102864371 - MTE-int LTR MaLR -1325 255 6 5 729 414 0 0 0 chr11 18980138 18980184 -102863672 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 729 8173 45 2 3 chr11 18980841 18981897 -102861959 - L1Md_F2 LINE L1 0 6582 5529 5 729 5610 31 4 0 chr11 18981897 18982583 -102861273 - RLTR13A3 LTR ERVK 0 978 290 5 729 36399 45 1 3 chr11 18982592 18988047 -102855809 + L1Md_T LINE L1 52 5589 -297 5 729 9011 33 0 0 chr11 18988047 18989043 -102854813 + L1Md_T LINE L1 5590 6585 0 5 729 905 181 0 74 chr11 18989059 18989274 -102854582 - RLTR13A3 LTR ERVK -656 199 1 5 729 12147 28 0 0 chr11 18989274 18990678 -102853178 - L1_Mm LINE L1 -349 5534 4131 5 729 886 178 14 0 chr11 18990939 18991085 -102852771 + B1_Mur4 SINE Alu 3 150 0 5 729 243 88 0 0 chr11 18991109 18991143 -102852713 + (AGGGGG)n Simple_repeat Simple_repeat 6 39 0 5 729 234 0 0 0 chr11 18991942 18991968 -102851888 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 729 212 156 0 43 chr11 18992765 18992812 -102851044 + A-rich Low_complexity Low_complexity 2 46 0 5 729 360 0 0 0 chr11 18995338 18995378 -102848478 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 729 826 348 3 14 chr11 18995396 18995687 -102848169 - B4A SINE B4 -2 290 3 5 729 4443 37 0 0 chr11 18996025 18996515 -102847341 + L1Md_T LINE L1 6093 6582 0 5 729 675 243 84 5 chr11 18996531 18996701 -102847155 + B3 SINE B2 1 185 -31 5 729 516 72 0 0 chr11 18996701 18996770 -102847086 + (CATA)n Simple_repeat Simple_repeat 2 70 0 6 729 675 243 84 5 chr11 18996770 18996789 -102847067 + B3 SINE B2 186 204 -12 5 729 323 306 62 9 chr11 18998033 18998145 -102845711 - PB1D7 SINE Alu -2 118 1 6 729 230 98 0 47 chr11 18998245 18998288 -102845568 + (TCC)n Simple_repeat Simple_repeat 3 43 0 6 729 237 361 102 0 chr11 18998702 18998810 -102845046 + MLT1N2 LTR MaLR 119 237 -325 6 729 692 134 125 0 chr11 18998828 18998940 -102844916 + B1_Mus1 SINE Alu 23 148 0 6 729 324 191 0 0 chr11 18998955 18999039 -102844817 + A-rich Low_complexity Low_complexity 1 84 0 6 729 185 236 0 18 chr11 18999502 18999558 -102844298 + L3b LINE CR1 76 130 -352 6 729 1328 221 144 3 chr11 19000037 19000404 -102843452 + MTD LTR MaLR 1 419 0 1 729 1164 41 7 26 chr11 19000567 19000718 -102843138 + B1_Mus1 SINE Alu 1 148 0 2 729 2318 87 78 0 chr11 19000719 19001112 -102842744 - L1_Mus1 LINE L1 -629 5938 5510 3 729 1007 15 0 30 chr11 19001112 19001247 -102842609 + B1_Mm SINE Alu 17 147 0 4 729 4873 70 2 5 chr11 19001248 19001878 -102841978 + L1_Mus1 LINE L1 5939 6566 -1 5 729 224 29 86 0 chr11 19002537 19002572 -102841284 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 729 554 288 51 29 chr11 19004086 19004261 -102839595 - B3A SINE B2 -19 179 1 7 730 285 206 19 9 chr11 19005462 19005570 -102838286 + (TA)n Simple_repeat Simple_repeat 1 109 0 8 730 273 190 0 65 chr11 19005571 19005633 -102838223 - L2a LINE L2 0 3426 3369 9 730 528 65 0 0 chr11 19005901 19005978 -102837878 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1 730 22 0 0 0 chr11 19006427 19006449 -102837407 + GC_rich Low_complexity Low_complexity 1 22 0 1 730 386 235 50 20 chr11 19008292 19008392 -102835464 - RSINE1 SINE B4 -35 130 28 1 730 237 278 0 0 chr11 19009720 19009774 -102834082 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 730 230 211 42 14 chr11 19010693 19010765 -102833091 - Lx7 LINE L1 -18 7678 7605 1 730 466 261 0 106 chr11 19010879 19011059 -102832797 - Lx7 LINE L1 -388 7308 7148 1 730 308 357 35 6 chr11 19011095 19011264 -102832592 - MIRb SINE MIR -58 210 37 1 730 1221 61 0 0 chr11 19012648 19012795 -102831061 - B1_Mus2 SINE Alu 0 147 1 1 730 658 267 67 81 chr11 19012940 19013299 -102830557 + ORR1E LTR MaLR 1 354 -5 1 730 306 277 0 0 chr11 19013840 19013923 -102829933 - L1MA4A LINE L1 -10 6290 6208 1 730 261 139 0 0 chr11 19013946 19013989 -102829867 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 730 268 295 0 0 chr11 19014004 19014065 -102829791 - L1M5 LINE L1 -619 5575 5515 2 730 1388 296 98 22 chr11 19014065 19014739 -102829117 - L1MA5 LINE L1 -98 6202 5478 2 730 326 308 0 46 chr11 19014944 19015097 -102828759 - L1MA4A LINE L1 -372 5928 5783 1 730 208 135 0 0 chr11 19015097 19015134 -102828722 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 2 730 309 82 0 0 chr11 19015134 19015183 -102828673 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 730 414 0 0 0 chr11 19015182 19015228 -102828628 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 730 728 263 31 29 chr11 19015228 19015529 -102828327 - L1MA4A LINE L1 -538 5759 5476 1 730 722 177 214 97 chr11 19015560 19015891 -102827965 - Lx7 LINE L1 0 7696 7327 2 730 741 115 0 0 chr11 19015898 19016011 -102827845 + B1_Mur3 SINE Alu 1 113 -36 2 730 203 250 0 20 chr11 19019665 19019696 -102824160 + C-rich Low_complexity Low_complexity 18 48 0 2 730 583 167 142 0 chr11 19019696 19019816 -102824040 - B1_Mur3 SINE Alu -12 137 1 2 730 203 250 0 20 chr11 19019816 19019833 -102824023 + C-rich Low_complexity Low_complexity 1 17 0 2 730 520 286 28 35 chr11 19019860 19020005 -102823851 - ID_B1 SINE B4 0 224 81 3 730 256 339 0 0 chr11 19021683 19021748 -102822108 - ID SINE ID -141 83 19 3 730 297 282 47 31 chr11 19021916 19022044 -102821812 - L1MB5 LINE L1 -82 6092 5963 3 730 904 278 133 49 chr11 19022160 19022775 -102821081 - L1MB5 LINE L1 -381 5799 5135 3 730 393 22 0 0 chr11 19022775 19022821 -102821035 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 730 665 183 114 0 chr11 19022822 19022953 -102820903 - B1_Mus1 SINE Alu -2 146 1 3 730 904 287 47 48 chr11 19022953 19023207 -102820649 - L1MB5 LINE L1 -1012 5134 4878 3 730 293 17 100 17 chr11 19023212 19023272 -102820584 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 3 730 1419 157 5 0 chr11 19023503 19023726 -102820130 - URR1B DNA MER1_type 0 225 2 3 730 260 288 0 0 chr11 19023769 19023835 -102820021 - ID4_ SINE ID -13 70 5 3 730 371 234 55 37 chr11 19023847 19023961 -102819895 - B1F SINE Alu -5 144 31 3 730 6819 109 11 14 chr11 19025850 19027535 -102816321 + L1VL4 LINE L1 216 1893 -1666 3 730 3293 146 495 20 chr11 19027540 19028604 -102815252 + L1_Mm LINE L1 4027 5596 -287 3 730 1245 88 155 0 chr11 19028590 19028783 -102815073 - L1_Mus3 LINE L1 -409 6229 6007 4 730 1141 68 18 12 chr11 19028785 19028950 -102814906 + L1_Mus3 LINE L1 6462 6627 -11 4 730 236 170 19 19 chr11 19028950 19029004 -102814852 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 730 505 144 42 5 chr11 19029025 19029147 -102814709 - Lx9 LINE L1 -1554 5906 5754 4 730 303 191 0 0 chr11 19029166 19029229 -102814627 + (CATA)n Simple_repeat Simple_repeat 4 66 0 4 730 571 342 138 0 chr11 19029255 19029574 -102814282 + Lx9 LINE L1 7087 7449 -195 4 730 269 151 19 0 chr11 19029589 19029642 -102814214 + CT-rich Low_complexity Low_complexity 1 54 0 4 730 230 234 150 41 chr11 19029642 19029789 -102814067 + Lx9 LINE L1 7482 7644 0 4 730 754 201 80 97 chr11 19029842 19030068 -102813788 + URR1A DNA MER1_type 1 222 -4 4 730 247 281 24 12 chr11 19031469 19031552 -102812304 - MLT1G LTR MaLR -56 535 452 4 730 642 60 0 0 chr11 19032571 19032654 -102811202 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 730 8321 70 2 1 chr11 19032662 19033751 -102810105 + L1_Mus3 LINE L1 5547 6635 -3 5 730 855 235 108 139 chr11 19035233 19035463 -102808393 - ORR1D2 LTR MaLR -2 368 165 5 730 666 82 0 0 chr11 19035463 19035561 -102808295 + (GA)n Simple_repeat Simple_repeat 2 99 0 5 730 855 235 108 139 chr11 19035561 19035710 -102808146 - ORR1D2 LTR MaLR -206 164 1 5 730 594 136 25 0 chr11 19035995 19036113 -102807743 + A-rich Low_complexity Low_complexity 2 122 0 5 730 306 73 0 0 chr11 19036113 19036154 -102807702 + (CGAGA)n Simple_repeat Simple_repeat 1 41 0 5 730 1169 318 67 40 chr11 19036601 19037322 -102806534 + L1MA7 LINE L1 5417 6156 -135 5 730 207 0 0 0 chr11 19038913 19038936 -102804920 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 730 484 292 32 0 chr11 19039477 19039631 -102804225 - MER33 DNA MER1_type -1 323 165 5 730 311 303 18 9 chr11 19039781 19039891 -102803965 - MER33 DNA MER1_type -208 116 6 5 730 346 202 56 0 chr11 19040324 19040413 -102803443 + MTEb LTR MaLR 4 97 -262 5 730 352 277 12 21 chr11 19040423 19040550 -102803306 + MTEb LTR MaLR 248 373 -6 5 730 682 232 16 36 chr11 19040934 19041126 -102802730 - B3 SINE B2 -27 189 2 5 730 354 98 0 0 chr11 19042085 19042136 -102801720 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 730 396 0 0 0 chr11 19042379 19042423 -102801433 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 730 24 0 0 0 chr11 19042564 19042588 -102801268 + AT_rich Low_complexity Low_complexity 1 24 0 6 730 473 32 16 0 chr11 19042694 19042757 -102801099 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 730 333 0 0 0 chr11 19042808 19042845 -102801011 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 6 730 207 100 0 0 chr11 19043121 19043151 -102800705 + (CGTG)n Simple_repeat Simple_repeat 3 32 0 6 730 744 68 0 0 chr11 19043162 19043265 -102800591 + (GA)n Simple_repeat Simple_repeat 2 104 0 6 730 626 247 77 6 chr11 19044546 19044729 -102799127 - MTD LTR MaLR -1 418 223 6 730 305 316 105 0 chr11 19045136 19045269 -102798587 - B1F1 SINE Alu 0 149 3 6 730 413 300 0 18 chr11 19045489 19045601 -102798255 + RSINE1 SINE B4 56 165 0 6 730 270 0 0 0 chr11 19047399 19047429 -102796427 + (T)n Simple_repeat Simple_repeat 1 30 0 7 730 196 318 26 43 chr11 19047983 19048098 -102795758 + MIR SINE MIR 60 172 -90 7 730 284 146 0 0 chr11 19048401 19048456 -102795400 - URR1B DNA MER1_type -61 164 110 7 730 201 186 23 0 chr11 19050506 19050549 -102793307 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 7 730 854 103 7 0 chr11 19050551 19050687 -102793169 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 7 730 228 74 73 18 chr11 19050921 19050976 -102792880 + T-rich Low_complexity Low_complexity 3 60 0 7 730 644 293 6 23 chr11 19051426 19051597 -102792259 + B3 SINE B2 3 170 -46 7 730 31 44 0 0 chr11 19051898 19051943 -102791913 + AT_rich Low_complexity Low_complexity 1 45 0 7 730 265 321 127 39 chr11 19051981 19052444 -102791412 + L1M5 LINE L1 3502 4005 -2141 7 730 504 279 39 19 chr11 19052978 19053183 -102790673 + L1MB7 LINE L1 5975 6183 -1 7 730 920 247 65 116 chr11 19053572 19053970 -102789886 + MTE2a LTR MaLR 1 378 -1 8 730 239 277 0 0 chr11 19054114 19054161 -102789695 + polypurine Low_complexity Low_complexity 3 49 0 8 730 1115 263 42 93 chr11 19055313 19055817 -102788039 - RLTR31_Mur LTR ERVK -37 516 39 8 730 2959 29 3 11 chr11 19056431 19056780 -102787076 + ORR1A0 LTR MaLR 1 346 0 8 730 4001 55 23 0 chr11 19056780 19057352 -102786504 + ORR1A0-int LTR MaLR 1 613 -757 8 730 363 298 14 41 chr11 19057352 19057499 -102786357 - RSINE1 SINE B4 -19 146 4 8 730 1750 246 114 26 chr11 19057499 19057551 -102786305 + ORR1A0-int LTR MaLR 614 680 -690 8 730 207 328 92 36 chr11 19057926 19058122 -102785734 - L2 LINE L2 -434 2985 2779 8 730 656 291 57 39 chr11 19058384 19058716 -102785140 - L1MA4A LINE L1 -277 6023 5686 8 730 266 310 130 0 chr11 19061045 19061145 -102782711 - MIR3 SINE MIR -6 202 90 8 730 273 193 11 60 chr11 19061186 19061368 -102782488 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 8 730 223 234 0 0 chr11 19061835 19061882 -102781974 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 730 515 308 35 0 chr11 19061897 19062040 -102781816 - RSINE1 SINE B4 -14 151 4 9 730 228 135 0 51 chr11 19062726 19062765 -102781091 + L1M7 LINE L1 241 277 -5941 9 730 1316 196 170 139 chr11 19063490 19063962 -102779894 + MT2A LTR ERVL 1 490 -43 9 730 216 0 0 0 chr11 19063962 19063986 -102779870 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 730 1316 196 170 139 chr11 19063986 19064030 -102779826 + MT2A LTR ERVL 491 533 0 9 730 206 289 139 40 chr11 19064083 19064285 -102779571 + MIRb SINE MIR 39 260 -8 9 730 4077 32 0 6 chr11 19064746 19065220 -102778636 + L1Md_F2 LINE L1 6099 6569 -13 9 730 226 0 29 29 chr11 19065229 19065264 -102778592 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 730 438 292 73 39 chr11 19066345 19066523 -102777333 + B4A SINE B4 104 287 -5 9 730 346 20 0 38 chr11 19067153 19067206 -102776650 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 730 593 328 38 31 chr11 19067352 19067645 -102776211 - MER58B DNA MER1_type -1 340 46 9 730 1366 71 22 6 chr11 19067677 19067860 -102775996 + B2_Mm2 SINE B2 3 188 -7 1 730 2269 179 34 122 chr11 19069450 19070091 -102773765 + Lx9 LINE L1 7043 7627 -17 1 730 273 297 0 0 chr11 19070092 19070156 -102773700 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 1 730 475 303 56 91 chr11 19071605 19071993 -102771863 - ORR1E LTR MaLR 0 370 1 1 730 292 286 0 0 chr11 19072565 19072635 -102771221 - ID4_ SINE ID -13 70 1 1 730 408 40 0 0 chr11 19074233 19074283 -102769573 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 730 263 93 0 23 chr11 19076209 19076253 -102767603 + (AGGGGG)n Simple_repeat Simple_repeat 1 43 0 1 730 473 175 0 10 chr11 19077316 19077420 -102766436 + (TG)n Simple_repeat Simple_repeat 2 104 0 1 730 2165 135 54 13 chr11 19077431 19077822 -102766034 + MTB_Mm LTR MaLR 1 407 0 1 730 717 328 27 12 chr11 19077825 19078081 -102765775 - B4A SINE B4 -32 260 1 1 730 318 50 0 0 chr11 19079558 19079598 -102764258 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 730 249 159 0 0 chr11 19079642 19079686 -102764170 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 730 427 243 61 54 chr11 19079706 19079854 -102764002 - RSINE1 SINE B4 0 165 17 1 730 489 300 45 34 chr11 19080071 19080247 -102763609 - B3A SINE B2 -16 182 5 1 730 229 200 40 0 chr11 19080595 19080645 -102763211 + CT-rich Low_complexity Low_complexity 3 54 0 1 730 1375 263 141 2 chr11 19080826 19081237 -102762619 - Lx7 LINE L1 -888 6808 6341 1 730 944 223 43 177 chr11 19081372 19081955 -102761901 + RLTR16 LTR ERVK 1 505 0 1 730 207 0 0 0 chr11 19082930 19082953 -102760903 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 730 270 211 248 26 chr11 19083035 19083152 -102760704 + MER45A DNA Tip100 4 146 -32 1 730 354 309 203 9 chr11 19083325 19083537 -102760319 + B4A SINE B4 28 280 -12 1 730 238 331 70 8 chr11 19083592 19083720 -102760136 - MLT1A1 LTR MaLR 0 408 273 1 730 213 211 0 0 chr11 19084630 19084682 -102759174 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 730 278 245 11 0 chr11 19084769 19085073 -102758783 + (TG)n Simple_repeat Simple_repeat 1 307 0 1 730 204 240 0 0 chr11 19085120 19085220 -102758636 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 730 1906 50 8 4 chr11 19085879 19086139 -102757717 + RLTR10A LTR ERVK 1 261 -150 1 730 967 75 8 0 chr11 19086123 19086257 -102757599 + RLTR27 LTR ERVK 175 309 0 1 730 324 0 0 0 chr11 19087232 19087268 -102756588 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 730 596 330 154 65 chr11 19087364 19087737 -102756119 - Lx8 LINE L1 -196 7277 6859 1 730 180 0 0 0 chr11 19087737 19087757 -102756099 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 730 596 330 154 65 chr11 19087757 19087895 -102755961 - Lx8 LINE L1 -615 6858 6722 1 730 1627 227 68 10 chr11 19088758 19089154 -102754702 - MTD LTR MaLR 0 419 1 1 730 785 304 139 14 chr11 19090637 19091230 -102752626 - L1MD2 LINE L1 -181 5998 5266 1 730 680 292 45 35 chr11 19091292 19091320 -102752536 - B4 SINE B4 -1 291 265 1 730 354 61 0 0 chr11 19091320 19091369 -102752487 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 730 680 292 45 35 chr11 19091369 19091627 -102752229 - B4 SINE B4 -28 264 2 1 730 324 0 0 0 chr11 19091692 19091728 -102752128 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 730 399 41 0 0 chr11 19091728 19091776 -102752080 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 730 225 0 0 0 chr11 19091798 19091823 -102752033 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 730 1112 73 12 0 chr11 19092024 19092189 -102751667 + B2_Mm1t SINE B2 26 192 -1 1 730 318 322 11 0 chr11 19092213 19092303 -102751553 - PB1D9 SINE Alu -28 92 2 1 730 249 234 62 31 chr11 19093140 19093237 -102750619 + Charlie1b DNA MER1_type 424 523 0 1 730 264 272 130 0 chr11 19093288 19093380 -102750476 + L3b LINE CR1 28 131 -351 1 730 540 304 19 38 chr11 19093406 19093618 -102750238 + L3b LINE CR1 214 421 -61 1 730 324 0 0 0 chr11 19093620 19093656 -102750200 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 730 234 0 0 0 chr11 19094552 19094578 -102749278 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 1 730 1125 68 7 7 chr11 19094848 19094995 -102748861 - B1_Mm SINE Alu 0 147 1 1 730 189 228 12 25 chr11 19095076 19095157 -102748699 + GA-rich Low_complexity Low_complexity 6 85 0 1 730 234 327 57 40 chr11 19095776 19095951 -102747905 - MTEb LTR MaLR -5 374 197 1 730 204 176 0 0 chr11 19097094 19097129 -102746727 + CT-rich Low_complexity Low_complexity 17 51 0 1 730 372 59 0 0 chr11 19097129 19097180 -102746676 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 1 730 204 176 0 0 chr11 19097180 19097195 -102746661 + polypyrimidine Low_complexity Low_complexity 2 16 0 1 730 210 286 64 13 chr11 19099007 19099085 -102744771 - MIRc SINE MIR -110 158 77 1 730 236 345 35 0 chr11 19099596 19099709 -102744147 + MER63D DNA AcHobo 276 392 -669 1 730 28 29 0 0 chr11 19100026 19100061 -102743795 + AT_rich Low_complexity Low_complexity 1 35 0 1 730 967 178 86 9 chr11 19100097 19100307 -102743549 + URR1A DNA MER1_type 1 226 0 1 730 754 316 67 91 chr11 19100471 19101010 -102742846 + MT2A LTR ERVL 1 526 -7 1 730 244 218 11 11 chr11 19102722 19102810 -102741046 + GA-rich Low_complexity Low_complexity 1 88 0 1 730 342 0 0 0 chr11 19103067 19103105 -102740751 + (T)n Simple_repeat Simple_repeat 1 38 0 1 730 391 294 0 10 chr11 19103466 19103569 -102740287 + PB1D10 SINE Alu 2 103 -14 1 730 218 200 0 0 chr11 19104358 19104408 -102739448 + A-rich Low_complexity Low_complexity 1 50 0 1 730 29 70 0 0 chr11 19105751 19105808 -102738048 + AT_rich Low_complexity Low_complexity 1 57 0 1 730 652 250 162 5 chr11 19105810 19105995 -102737861 - B3 SINE B2 -2 214 1 1 730 29740 103 18 3 chr11 19109568 19115725 -102728131 + L1_Mus1 LINE L1 264 6566 -1 1 730 1590 226 36 45 chr11 19115865 19116286 -102727570 + MTD LTR MaLR 1 417 -2 1 730 260 256 51 13 chr11 19117049 19117128 -102726728 - MER115 DNA Tip100 -1 692 611 1 730 21 36 0 0 chr11 19117184 19117212 -102726644 + AT_rich Low_complexity Low_complexity 1 28 0 1 730 1577 241 34 34 chr11 19117440 19117857 -102725999 - MTD LTR MaLR 0 419 3 1 730 226 261 159 18 chr11 19119077 19119190 -102724666 - MIR SINE MIR -76 186 58 1 730 286 254 114 18 chr11 19120020 19120134 -102723722 + B1_Mur1 SINE Alu 4 149 0 1 730 2008 167 17 3 chr11 19120307 19120661 -102723195 + ORR1B2 LTR MaLR 9 367 0 1 730 861 103 0 0 chr11 19121348 19121474 -102722382 + (TCTCCC)n Simple_repeat Simple_repeat 3 128 0 1 730 925 218 29 34 chr11 19121719 19121928 -102721928 - B3 SINE B2 -4 212 5 1 730 232 257 57 146 chr11 19122298 19122421 -102721435 + B4A SINE B4 48 159 -65 1 730 337 224 59 0 chr11 19125099 19125184 -102718672 + RSINE1 SINE B4 76 165 0 1 730 705 282 15 30 chr11 19125475 19125676 -102718180 - B3A SINE B2 0 198 1 1 730 637 294 25 62 chr11 19125853 19126129 -102717727 + Lx8 LINE L1 6674 6939 -534 1 730 342 0 0 0 chr11 19126372 19126410 -102717446 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 730 241 204 0 0 chr11 19126689 19126733 -102717123 - L1MB2 LINE L1 -110 6061 6018 1 730 1501 212 61 16 chr11 19126752 19127111 -102716745 - ORR1D1 LTR MaLR -1 420 1 1 730 454 158 0 40 chr11 19127330 19127429 -102716427 - L1Md_F2 LINE L1 0 6582 6488 1 730 314 361 0 0 chr11 19130761 19130858 -102712998 - PB1D10 SINE Alu -18 99 3 1 730 356 300 99 7 chr11 19131590 19131731 -102712125 + MER58A DNA MER1_type 71 224 0 1 730 1040 242 38 101 chr11 19131784 19132151 -102711705 - MTEa LTR MaLR 0 379 36 1 730 1902 308 55 17 chr11 19132189 19132720 -102711136 - MTE-int LTR MaLR -10 1570 1015 1 730 2431 188 46 134 chr11 19132720 19133389 -102710467 - RMER19C LTR ERVK 0 611 2 1 730 1902 308 55 17 chr11 19133389 19133512 -102710344 - MTE-int LTR MaLR -566 1014 891 1 730 351 245 11 11 chr11 19133538 19133633 -102710223 - MTEb LTR MaLR -283 96 2 1 730 243 0 0 0 chr11 19135226 19135253 -102708603 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 730 213 149 21 0 chr11 19135276 19135323 -102708533 + (CAA)n Simple_repeat Simple_repeat 1 48 0 1 730 1350 67 0 0 chr11 19135706 19136009 -102707847 + (TG)n Simple_repeat Simple_repeat 1 303 0 1 730 297 221 58 66 chr11 19136038 19136159 -102707697 - RSINE1 SINE B4 -36 129 10 1 731 241 283 0 0 chr11 19136719 19136779 -102707077 + PB1D10 SINE Alu 47 106 -11 1 731 7759 204 50 27 chr11 19136779 19138725 -102705131 + Lx6 LINE L1 5458 7453 -7 1 731 550 215 16 0 chr11 19138792 19138913 -102704943 + Lx6 LINE L1 7119 7241 -219 1 731 1186 49 0 7 chr11 19139412 19139555 -102704301 + B1_Mus2 SINE Alu 1 142 -5 1 731 303 349 39 13 chr11 19139659 19139813 -102704043 - L2a LINE L2 -1 3425 3268 1 731 4219 115 11 35 chr11 19140060 19140710 -102703146 + Lx4A LINE L1 6421 7054 -4 1 731 202 158 26 0 chr11 19140710 19140748 -102703108 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 731 416 251 115 46 chr11 19144011 19144228 -102699628 + MamRep4096 DNA hAT? 33 264 -162 1 731 752 241 30 30 chr11 19144437 19144472 -102699384 - ORR1D1 LTR MaLR -161 213 177 1 731 675 67 0 0 chr11 19144472 19144561 -102699295 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 731 752 241 30 30 chr11 19144561 19144726 -102699130 - ORR1D1 LTR MaLR -198 176 14 1 731 1137 269 34 93 chr11 19144750 19145159 -102698697 - MTD LTR MaLR -16 403 19 1 731 243 0 0 0 chr11 19145234 19145261 -102698595 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 731 7292 49 11 3 chr11 19145308 19146195 -102697661 - L1Md_F2 LINE L1 -12 6570 5677 1 731 239 143 14 54 chr11 19149552 19149626 -102694230 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1 731 1907 155 31 3 chr11 19150292 19150609 -102693247 + ORR1A3 LTR MaLR 1 326 0 1 731 1102 37 22 0 chr11 19150735 19150870 -102692986 + B1_Mus1 SINE Alu 2 139 -9 2 731 189 0 0 0 chr11 19150880 19150901 -102692955 + (A)n Simple_repeat Simple_repeat 1 21 0 2 731 3897 203 32 68 chr11 19151296 19152207 -102691649 + Lx7 LINE L1 6819 7696 0 2 731 1657 173 9 39 chr11 19152225 19152556 -102691300 + ORR1A4 LTR MaLR 1 321 -8 2 731 282 125 0 0 chr11 19152628 19152676 -102691180 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 731 544 244 9 0 chr11 19154788 19154903 -102688953 - B1_Mur1 SINE Alu -7 142 27 2 731 225 265 0 14 chr11 19156759 19156828 -102687028 - ID4 SINE ID -14 69 2 2 731 618 71 0 0 chr11 19157956 19158040 -102685816 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 731 429 54 0 0 chr11 19158311 19158367 -102685489 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 731 180 0 0 0 chr11 19158553 19158573 -102685283 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 2 731 816 107 0 0 chr11 19158573 19158693 -102685163 + (GAAAA)n Simple_repeat Simple_repeat 5 125 0 2 731 576 171 219 0 chr11 19158696 19158819 -102685037 - B1_Mur4 SINE Alu 0 150 1 2 731 1265 157 37 0 chr11 19159248 19159465 -102684391 - URR1B DNA MER1_type 0 225 1 2 731 243 0 0 0 chr11 19161446 19161473 -102682383 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 2 731 906 161 176 5 chr11 19161640 19161833 -102682023 + URR1A DNA MER1_type 1 226 0 2 731 193 265 20 0 chr11 19161872 19161921 -102681935 + MER5A DNA MER1_type 47 96 -93 2 731 201 26 51 26 chr11 19162365 19162404 -102681452 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 2 731 218 318 47 53 chr11 19162425 19162626 -102681230 - MIRc SINE MIR -37 231 38 2 731 385 277 147 25 chr11 19163395 19163558 -102680298 - RMER30 DNA MER1_type -9 193 11 2 731 550 310 22 44 chr11 19164278 19164460 -102679396 - B3A SINE B2 -20 178 1 2 731 730 231 75 6 chr11 19167310 19167484 -102676372 - MER105 DNA DNA -1 203 18 2 731 360 0 0 0 chr11 19168026 19168066 -102675790 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 731 1303 57 0 0 chr11 19168282 19168439 -102675417 + L1_Mus2 LINE L1 6410 6566 0 2 731 1204 264 62 13 chr11 19168549 19168943 -102674913 + Lx9 LINE L1 6394 6969 -675 2 731 1066 298 50 31 chr11 19168959 19169533 -102674323 + Lx9 LINE L1 6878 7473 0 2 731 293 141 68 40 chr11 19169904 19169978 -102673878 - RLTR16 LTR ERVK 0 505 430 2 731 2209 209 40 4 chr11 19169975 19170054 -102673802 - RLTR16 LTR ERVK -12 493 415 2 731 513 0 0 0 chr11 19170054 19170111 -102673745 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 731 2209 209 40 4 chr11 19170111 19170507 -102673349 - RLTR16 LTR ERVK -91 414 2 2 731 982 293 113 14 chr11 19170927 19171429 -102672427 + L2 LINE L2 2236 2787 -632 2 731 546 16 0 0 chr11 19171557 19171620 -102672236 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 731 816 275 50 69 chr11 19171622 19171899 -102671957 - B4A SINE B4 -19 273 2 2 731 288 328 189 20 chr11 19172201 19172602 -102671254 - L1MEf LINE L1 -1023 5123 4655 2 731 3922 276 78 28 chr11 19172695 19175183 -102668673 - Lx9 LINE L1 -20 7624 4953 2 731 502 129 11 21 chr11 19175397 19175492 -102668364 + L1Md_F2 LINE L1 6487 6580 -2 2 731 26 0 0 0 chr11 19175492 19175518 -102668338 + AT_rich Low_complexity Low_complexity 1 26 0 2 731 284 281 0 0 chr11 19175874 19175931 -102667925 - RSINE1 SINE B4 -21 144 88 2 731 1232 295 70 38 chr11 19175933 19176563 -102667293 - L1MEf LINE L1 -2132 4014 3365 2 731 247 315 11 0 chr11 19176566 19176658 -102667198 - L1MEf LINE L1 -4881 1361 1269 2 731 399 41 0 0 chr11 19176798 19176847 -102667009 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2 731 456 316 121 34 chr11 19177189 19177628 -102666228 - L1ME1 LINE L1 -64 6115 5639 2 731 283 267 0 39 chr11 19177719 19177797 -102666059 + C-rich Low_complexity Low_complexity 6 80 0 2 731 25 65 0 0 chr11 19178605 19178651 -102665205 + AT_rich Low_complexity Low_complexity 1 46 0 2 731 467 316 36 7 chr11 19178780 19178917 -102664939 + B1F SINE Alu 2 142 -7 2 731 207 0 0 0 chr11 19179591 19179614 -102664242 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 731 22 0 0 0 chr11 19179620 19179642 -102664214 + AT_rich Low_complexity Low_complexity 1 22 0 2 731 1016 281 109 19 chr11 19180765 19180940 -102662916 - MTE2b LTR MaLR -13 366 173 2 731 2416 74 47 0 chr11 19180940 19181237 -102662619 - RLTR10E LTR ERVK 0 311 1 2 731 1016 281 109 19 chr11 19181237 19181373 -102662483 - MTE2b LTR MaLR -207 172 27 2 731 232 305 0 0 chr11 19181739 19181798 -102662058 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 731 273 341 127 27 chr11 19183486 19183706 -102660150 - MIR SINE MIR -6 256 15 2 731 198 0 0 0 chr11 19184307 19184329 -102659527 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 731 362 300 90 32 chr11 19184705 19184860 -102658996 - RSINE1 SINE B4 0 165 2 2 731 396 88 0 0 chr11 19184929 19184986 -102658870 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 731 704 201 2 0 chr11 19184985 19185393 -102658463 + (CA)n Simple_repeat Simple_repeat 1 409 0 2 731 1103 58 57 14 chr11 19185626 19185766 -102658090 - B1_Mm SINE Alu 0 147 2 2 731 210 218 36 0 chr11 19187937 19187992 -102655864 + CT-rich Low_complexity Low_complexity 4 60 0 2 731 1146 0 39 0 chr11 19192258 19192412 -102651444 + (TC)n Simple_repeat Simple_repeat 1 160 0 2 731 241 221 56 34 chr11 19192560 19192649 -102651207 + MLT1A1 LTR MaLR 318 408 0 2 731 482 368 44 10 chr11 19192649 19192830 -102651026 - MLT1A LTR MaLR -42 332 145 2 731 238 297 40 0 chr11 19192845 19192919 -102650937 - MLT1A LTR MaLR -286 79 3 2 731 587 241 83 18 chr11 19193019 19193164 -102650692 + B3A SINE B2 7 158 -40 2 731 192 125 0 0 chr11 19193164 19193196 -102650660 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 731 587 241 83 18 chr11 19193196 19193219 -102650637 + B3A SINE B2 159 186 -12 2 731 258 346 38 6 chr11 19193464 19193621 -102650235 + L1MB4 LINE L1 5933 6094 -86 2 731 247 313 0 0 chr11 19193759 19193826 -102650030 - ID4 SINE ID -14 69 3 2 731 274 156 0 30 chr11 19193910 19193976 -102649880 + (TATG)n Simple_repeat Simple_repeat 1 64 0 2 731 237 164 82 0 chr11 19193976 19194049 -102649807 - Lx9 LINE L1 -83 7561 7483 2 731 295 248 0 16 chr11 19194062 19194185 -102649671 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 731 400 318 156 22 chr11 19194185 19194410 -102649446 - Lx8 LINE L1 -149 7324 7070 2 731 555 295 97 50 chr11 19194422 19194702 -102649154 + B4 SINE B4 14 288 -4 2 731 3015 60 3 16 chr11 19195243 19195615 -102648241 - L1_Mus1 LINE L1 -1 6566 6200 2 731 3828 83 6 0 chr11 19195615 19196110 -102647746 + L1_Mus1 LINE L1 5726 6223 -344 2 731 743 177 100 35 chr11 19196108 19196278 -102647578 - RMER1B Other Other -25 1041 861 2 731 206 329 52 13 chr11 19196283 19196360 -102647496 + MER91A DNA Tip100 5 84 -112 2 731 185 189 0 26 chr11 19196718 19196756 -102647100 - MIRm SINE MIR -3 273 237 2 731 536 42 14 0 chr11 19196894 19196965 -102646891 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 731 611 300 129 22 chr11 19197008 19197240 -102646616 - B4A SINE B4 -32 260 4 2 731 871 271 151 19 chr11 19197440 19197752 -102646104 - ORR1E LTR MaLR -6 353 1 2 731 26 30 0 0 chr11 19198507 19198540 -102645316 + AT_rich Low_complexity Low_complexity 1 33 0 2 731 1231 293 92 21 chr11 19198546 19199125 -102644731 + L1MC1 LINE L1 5443 6062 -271 2 731 1182 122 33 11 chr11 19199138 19199321 -102644535 + B2_Mm2 SINE B2 2 188 -7 2 731 23 0 0 0 chr11 19199953 19199976 -102643880 + AT_rich Low_complexity Low_complexity 1 23 0 2 731 283 328 9 9 chr11 19200603 19200717 -102643139 + RMER1B Other Other 40 153 -913 2 731 283 304 182 8 chr11 19200921 19201047 -102642809 + RMER1C Other Other 411 558 -784 2 731 297 109 0 0 chr11 19201069 19201115 -102642741 + (TAA)n Simple_repeat Simple_repeat 1 46 0 2 731 190 260 130 96 chr11 19202834 19202949 -102640907 - L2 LINE L2 -481 2938 2820 2 731 552 256 156 53 chr11 19203072 19203315 -102640541 + LTR16A LTR ERVL 146 413 -38 2 731 396 0 0 0 chr11 19204011 19204055 -102639801 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 731 221 57 0 28 chr11 19204577 19204613 -102639243 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 731 32 0 0 0 chr11 19208385 19208417 -102635439 + AT_rich Low_complexity Low_complexity 1 32 0 2 731 192 276 114 38 chr11 19208422 19208501 -102635355 + MIRb SINE MIR 176 260 -8 2 731 252 0 0 0 chr11 19208822 19208850 -102635006 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 731 366 210 118 0 chr11 19209950 19210069 -102633787 + Lx9 LINE L1 7505 7637 -7 2 731 210 191 0 0 chr11 19211508 19211550 -102632306 + (CAA)n Simple_repeat Simple_repeat 2 43 0 2 731 226 363 96 25 chr11 19211594 19211792 -102632064 + MIR SINE MIR 26 237 -25 2 731 3574 255 115 55 chr11 19212361 19213929 -102629927 + L1_Mur3 LINE L1 2601 4261 -1619 2 731 258 254 0 0 chr11 19213988 19214043 -102629813 - Lx7 LINE L1 -416 7280 7226 2 731 189 0 0 0 chr11 19214062 19214083 -102629773 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 731 207 0 0 0 chr11 19214108 19214131 -102629725 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 2 731 888 227 84 31 chr11 19214232 19214459 -102629397 - Lx7 LINE L1 -877 6819 6581 2 731 985 281 83 30 chr11 19214477 19214814 -102629042 - Lx7 LINE L1 -1199 6497 6143 2 731 483 18 0 0 chr11 19214840 19214896 -102628960 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 731 8022 84 7 9 chr11 19214896 19216580 -102627276 - L1_Mus3 LINE L1 -10 6628 4947 2 731 562 211 0 53 chr11 19216580 19216730 -102627126 - L1_Mur3 LINE L1 -872 5008 4867 2 731 1175 231 102 3 chr11 19216711 19217036 -102626820 + L1_Mur3 LINE L1 5361 5717 -163 2 731 268 319 48 28 chr11 19217285 19217426 -102626430 + MER5A DNA MER1_type 2 146 -20 2 731 200 233 83 0 chr11 19217428 19217488 -102626368 + MIR SINE MIR 132 196 -66 2 731 446 339 5 21 chr11 19217812 19218002 -102625854 + MIRc SINE MIR 82 268 0 2 731 347 289 190 0 chr11 19219915 19220036 -102623820 - ORR1E LTR MaLR -215 144 1 2 731 475 306 148 32 chr11 19220129 19220379 -102623477 + MLT2B3 LTR ERVL 15 293 -261 2 731 341 338 36 0 chr11 19220376 19220515 -102623341 + MLT2B3 LTR ERVL 415 558 -4 2 731 33 0 0 0 chr11 19221117 19221150 -102622706 + AT_rich Low_complexity Low_complexity 1 33 0 3 731 3302 187 2 10 chr11 19221251 19221850 -102622006 + Lx2 LINE L1 544 1137 -5520 3 731 17880 129 14 53 chr11 19221832 19223809 -102620047 + Lx2 LINE L1 509 2373 -3510 3 731 3131 67 13 3 chr11 19223809 19224201 -102619655 - MTA_Mm LTR MaLR 0 396 1 3 731 17880 108 8 19 chr11 19224201 19225787 -102618069 + Lx2 LINE L1 2374 3933 -1950 3 731 6821 165 34 13 chr11 19225793 19225918 -102617938 + Lx2 LINE L1 4635 4772 -1111 3 731 198 0 0 0 chr11 19225918 19225940 -102617916 + (GAATG)n Simple_repeat Simple_repeat 3 24 0 3 731 9366 142 19 12 chr11 19225940 19228146 -102615710 + Lx2 LINE L1 4773 6991 -6 3 731 400 232 15 67 chr11 19228188 19228322 -102615534 - MER53 DNA hAT -66 127 1 3 731 216 97 0 0 chr11 19228599 19228630 -102615226 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 731 534 311 26 26 chr11 19229450 19229663 -102614193 - B3A SINE B2 0 216 1 3 731 28 0 0 0 chr11 19229668 19229696 -102614160 + AT_rich Low_complexity Low_complexity 1 28 0 3 731 615 284 127 10 chr11 19229771 19230063 -102613793 - L1MA5 LINE L1 -6 6294 5969 3 731 463 253 31 1 chr11 19230089 19230229 -102613627 + L1MA5 LINE L1 5706 5852 -448 3 731 190 147 59 0 chr11 19230313 19230347 -102613509 + MER5A DNA MER1_type 2 37 -152 3 731 555 56 0 0 chr11 19230624 19230695 -102613161 + (TCC)n Simple_repeat Simple_repeat 3 73 0 3 731 216 0 0 0 chr11 19230988 19231012 -102612844 + (A)n Simple_repeat Simple_repeat 1 24 0 3 731 801 156 177 6 chr11 19231236 19231417 -102612439 + URR1A DNA MER1_type 1 212 -14 3 731 480 0 42 28 chr11 19231661 19231733 -102612123 + (TTTTC)n Simple_repeat Simple_repeat 4 76 0 3 731 238 125 26 53 chr11 19232569 19232645 -102611211 + T-rich Low_complexity Low_complexity 2 75 0 3 731 3051 59 68 42 chr11 19233347 19233772 -102610084 + RLTR10C LTR ERVK 1 436 0 3 731 303 315 0 0 chr11 19234355 19234444 -102609412 - MuLV-int LTR ERV1 -64 7714 7626 3 731 818 88 0 0 chr11 19234445 19234559 -102609297 + B1_Mus1 SINE Alu 18 131 -17 3 731 243 0 0 0 chr11 19234562 19234589 -102609267 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 731 768 316 40 14 chr11 19234611 19235051 -102608805 - MuLV-int LTR ERV1 -245 4818 4524 3 731 331 262 37 37 chr11 19235371 19235506 -102608350 - MuLV-int LTR ERV1 -1780 5776 5642 3 731 6554 316 72 47 chr11 19235671 19239161 -102604695 - MuLV-int LTR ERV1 -1996 5610 2047 3 731 1284 60 0 0 chr11 19239161 19239327 -102604529 + (TTCTCC)n Simple_repeat Simple_repeat 4 169 0 3 731 6554 294 54 19 chr11 19239327 19240273 -102603583 - MuLV-int LTR ERV1 -5560 2046 931 3 731 580 307 72 40 chr11 19240428 19240777 -102603079 - MuLV-int LTR ERV1 -6671 885 526 3 731 425 224 104 46 chr11 19241218 19241391 -102602465 - RLTR41 LTR ERV1 0 446 264 3 731 312 234 0 0 chr11 19241872 19241936 -102601920 - B1F1 SINE Alu -77 72 9 3 731 303 326 14 43 chr11 19241889 19242027 -102601829 - ID_B1 SINE B4 -88 136 3 3 731 268 254 122 9 chr11 19244834 19244949 -102598907 - MIRc SINE MIR -15 253 126 3 731 207 100 0 0 chr11 19245117 19245147 -102598709 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 731 198 0 0 0 chr11 19245707 19245729 -102598127 + (A)n Simple_repeat Simple_repeat 1 22 0 3 731 210 37 0 0 chr11 19245884 19245911 -102597945 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 3 731 387 0 0 0 chr11 19245982 19246025 -102597831 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 3 731 347 291 19 84 chr11 19246025 19246169 -102597687 - B1F SINE Alu -13 136 1 3 731 269 297 78 10 chr11 19248549 19248651 -102595205 + Lx8 LINE L1 7061 7169 -304 3 731 1118 222 56 11 chr11 19248670 19248957 -102594899 + MTE2b LTR MaLR 57 356 -23 3 731 276 282 104 30 chr11 19249073 19249208 -102594648 + RMER15 LTR ERVL 363 507 -68 3 731 490 178 0 72 chr11 19249290 19249484 -102594372 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 731 233 269 90 27 chr11 19249615 19249726 -102594130 + LTR16D LTR ERVL 529 646 -5 3 731 203 189 37 19 chr11 19250252 19250306 -102593550 + T-rich Low_complexity Low_complexity 2 56 0 3 731 417 20 0 0 chr11 19252271 19252321 -102591535 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 731 533 192 0 10 chr11 19252760 19252860 -102590996 + B1F2 SINE Alu 51 149 0 3 731 423 0 0 0 chr11 19252873 19252920 -102590936 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 731 252 0 0 0 chr11 19252921 19252949 -102590907 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 731 1348 269 44 16 chr11 19254315 19254681 -102589175 - MTEa LTR MaLR -3 376 1 3 731 2787 264 71 69 chr11 19254684 19255744 -102588112 - MTEa-int LTR MaLR -3 1577 516 3 731 215 61 30 0 chr11 19255761 19255794 -102588062 + (TATG)n Simple_repeat Simple_repeat 3 36 0 3 731 474 70 0 0 chr11 19255831 19255902 -102587954 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 731 397 296 14 29 chr11 19256038 19256177 -102587679 - B4A SINE B4 -145 147 11 3 731 1551 303 44 19 chr11 19256172 19256693 -102587163 - MTEa-int LTR MaLR -1038 542 9 3 731 1020 276 40 83 chr11 19256705 19257100 -102586756 - MTEa LTR MaLR 0 379 2 3 731 220 277 0 0 chr11 19257371 19257436 -102586420 + L2c LINE L2 3317 3381 -6 3 731 2343 189 76 6 chr11 19257458 19257943 -102585913 + Lx9 LINE L1 6865 7383 -261 3 731 544 145 113 0 chr11 19257941 19258065 -102585791 + Lx9 LINE L1 7506 7643 -1 3 731 286 267 9 95 chr11 19258393 19258509 -102585347 - MLT1A1 LTR MaLR -274 134 29 3 731 484 279 113 34 chr11 19258520 19258844 -102585012 - MTEb LTR MaLR 0 379 1 3 731 6090 75 21 8 chr11 19258968 19259772 -102584084 - L1_Mus1 LINE L1 0 6567 5753 3 731 21760 105 5 64 chr11 19259772 19260844 -102583012 - L1Md_F LINE L1 -1274 4609 3540 3 731 206 32 32 0 chr11 19260844 19260875 -102582981 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 731 21760 120 21 51 chr11 19260875 19264192 -102579664 - L1Md_F LINE L1 -2344 3539 380 3 731 31 0 0 0 chr11 19266026 19266057 -102577799 + AT_rich Low_complexity Low_complexity 1 31 0 3 731 201 111 0 53 chr11 19266128 19266166 -102577690 + T-rich Low_complexity Low_complexity 5 40 0 3 731 413 269 19 0 chr11 19267316 19267420 -102576436 - PB1D10 SINE Alu -5 112 7 3 732 673 282 0 54 chr11 19268081 19268265 -102575591 - B3 SINE B2 -42 174 1 3 732 210 224 52 0 chr11 19268815 19268873 -102574983 + B1F SINE Alu 41 101 -48 3 732 258 242 0 0 chr11 19269695 19269757 -102574099 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 732 270 116 0 0 chr11 19271457 19271500 -102572356 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 3 732 218 267 16 48 chr11 19271861 19271924 -102571932 - MER5B DNA MER1_type -102 76 16 3 732 543 152 51 43 chr11 19272723 19272861 -102570995 + Lx2 LINE L1 6850 6988 -9 3 732 182 37 0 36 chr11 19272861 19272889 -102570967 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 732 3484 170 140 71 chr11 19273200 19274044 -102569812 + RMER19B LTR ERVK 1 902 0 3 732 323 164 58 29 chr11 19274090 19274159 -102569697 + Lx8 LINE L1 6728 6798 -675 3 732 709 233 64 30 chr11 19274159 19274425 -102569431 + RCHARR1 DNA MER1_type 680 954 -20 3 732 635 241 218 40 chr11 19274426 19274612 -102569244 + B4A SINE B4 5 223 -69 3 732 213 39 0 0 chr11 19274612 19274638 -102569218 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 732 635 241 218 40 chr11 19274638 19274676 -102569180 + B4A SINE B4 224 268 -24 3 732 644 268 205 34 chr11 19275118 19275170 -102568686 - MTEb LTR MaLR -9 370 307 3 732 396 0 0 0 chr11 19275170 19275214 -102568642 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 3 732 644 268 205 34 chr11 19275214 19275458 -102568398 - MTEb LTR MaLR -73 306 24 3 732 599 243 0 67 chr11 19275516 19275666 -102568190 - MTEa LTR MaLR -239 140 1 3 732 181 298 160 0 chr11 19276079 19276173 -102567683 - L2a LINE L2 -2 3424 3316 3 732 620 338 36 44 chr11 19276605 19276967 -102566889 - ORR1E LTR MaLR 0 359 1 3 732 421 269 95 6 chr11 19277170 19277338 -102566518 - MER53 DNA hAT -4 189 7 3 732 330 26 0 0 chr11 19277613 19277652 -102566204 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 732 662 210 128 59 chr11 19277724 19277911 -102565945 + B4A SINE B4 33 232 -60 3 732 198 0 0 0 chr11 19277979 19278001 -102565855 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 732 297 0 0 0 chr11 19278001 19278033 -102565823 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 732 1065 274 70 39 chr11 19278232 19278589 -102565267 - ORR1D2 LTR MaLR -2 368 1 3 732 223 104 20 20 chr11 19278693 19278742 -102565114 + (TCC)n Simple_repeat Simple_repeat 3 51 0 3 732 513 0 0 0 chr11 19279462 19279519 -102564337 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 732 480 345 83 45 chr11 19281880 19282193 -102561663 - MER21B LTR ERV1 -107 756 432 3 732 251 339 0 84 chr11 19282356 19282475 -102561381 - MER21B LTR ERV1 -754 109 1 3 732 795 241 53 36 chr11 19283261 19283619 -102560237 + L1M2 LINE L1 2896 3259 -2884 3 732 2645 291 124 30 chr11 19284932 19285701 -102558155 + L1M2 LINE L1 3249 4090 -2053 3 732 363 44 0 0 chr11 19285701 19285746 -102558110 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 732 2645 291 124 30 chr11 19285746 19286605 -102557251 + L1M2 LINE L1 4091 5031 -1112 3 732 270 235 0 0 chr11 19286841 19286922 -102556934 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 732 432 0 0 0 chr11 19287206 19287254 -102556602 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 3 732 282 73 0 0 chr11 19288065 19288106 -102555750 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 732 206 176 0 19 chr11 19288212 19288264 -102555592 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 3 732 181 299 113 0 chr11 19289668 19289765 -102554091 + MIRc SINE MIR 107 214 -54 3 732 3561 43 0 2 chr11 19289858 19290255 -102553601 - MTA_Mm LTR MaLR 0 396 1 3 732 2128 171 35 0 chr11 19290375 19290720 -102553136 - MTC LTR MaLR -54 367 11 3 732 1262 312 13 10 chr11 19290999 19291502 -102552354 - L1M2 LINE L1 -967 5179 4666 3 732 381 167 0 0 chr11 19291533 19291635 -102552221 + (TTGG)n Simple_repeat Simple_repeat 2 103 0 3 732 181 351 27 0 chr11 19294838 19294912 -102548944 - MIRb SINE MIR -83 185 110 3 732 285 29 0 0 chr11 19296272 19296306 -102547550 + (AGGGGG)n Simple_repeat Simple_repeat 1 34 0 3 732 335 154 0 0 chr11 19296308 19296373 -102547483 + GA-rich Low_complexity Low_complexity 108 172 0 3 732 240 311 44 88 chr11 19296822 19296935 -102546921 + MTEa LTR MaLR 1 108 -271 3 732 231 250 63 48 chr11 19296871 19296997 -102546859 + MLT2B5 LTR ERVL 172 299 -418 3 732 1715 161 33 42 chr11 19297160 19297491 -102546365 + Lx7 LINE L1 7369 7696 0 3 732 288 0 0 0 chr11 19297495 19297527 -102546329 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 732 360 0 0 0 chr11 19297527 19297566 -102546290 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 732 840 159 17 0 chr11 19298346 19298522 -102545334 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 3 732 424 250 74 0 chr11 19299352 19299460 -102544396 + ID_B1 SINE B4 82 197 -27 4 732 1450 77 16 16 chr11 19299547 19299733 -102544123 + B2_Mm2 SINE B2 1 186 -9 4 732 188 200 18 0 chr11 19300026 19300081 -102543775 + (CAGCT)n Simple_repeat Simple_repeat 4 59 0 4 732 231 114 0 0 chr11 19301076 19301111 -102542745 + (TTCTCC)n Simple_repeat Simple_repeat 3 37 0 4 732 290 282 0 0 chr11 19301845 19301923 -102541933 - MIR SINE MIR -122 140 63 4 732 413 175 36 14 chr11 19302319 19302458 -102541398 + (TA)n Simple_repeat Simple_repeat 1 142 0 4 732 249 357 29 78 chr11 19302705 19302948 -102540908 - L1MEd LINE L1 -5565 554 324 4 732 186 43 0 0 chr11 19303226 19303249 -102540607 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 732 1070 234 201 0 chr11 19303341 19303649 -102540207 + MTE2b LTR MaLR 5 374 -5 4 732 474 244 16 25 chr11 19303653 19303775 -102540081 + MTE2b-int LTR MaLR 10 130 -1450 4 732 7968 68 2 0 chr11 19303775 19304951 -102538905 + L1_Mus1 LINE L1 5388 6567 0 4 732 497 16 0 16 chr11 19304954 19305017 -102538839 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 4 732 424 229 73 27 chr11 19305019 19305164 -102538692 + MTE2b-int LTR MaLR 121 258 -1322 4 732 3216 275 52 22 chr11 19305168 19305272 -102538584 + MTE2b-int LTR MaLR 594 693 -887 4 732 348 24 0 0 chr11 19305272 19305313 -102538543 + (ATTG)n Simple_repeat Simple_repeat 3 43 0 4 732 3216 275 52 22 chr11 19305313 19306134 -102537722 + MTE2b-int LTR MaLR 694 1547 -33 4 732 1240 63 0 0 chr11 19306138 19306281 -102537575 + B1_Mus1 SINE Alu 1 143 -5 4 732 1363 298 25 14 chr11 19306318 19306679 -102537177 + MTE2b LTR MaLR 1 365 -14 4 732 1187 99 168 25 chr11 19307323 19307520 -102536336 + URR1B DNA MER1_type 1 225 0 4 732 193 321 161 26 chr11 19307832 19308021 -102535835 + MIRc SINE MIR 34 243 -19 4 732 2241 73 28 16 chr11 19309137 19309455 -102534401 + RLTRETN_Mm LTR ERVK 1 322 0 4 732 26475 81 16 14 chr11 19309455 19315895 -102527961 + MMETn-int LTR ERVK 1 7299 -107 4 732 2241 73 28 16 chr11 19315895 19316213 -102527643 + RLTRETN_Mm LTR ERVK 1 322 0 4 732 488 283 18 9 chr11 19317430 19317544 -102526312 - B1_Mur1 SINE Alu -25 124 10 4 732 261 0 0 0 chr11 19317626 19317655 -102526201 + (A)n Simple_repeat Simple_repeat 1 29 0 4 732 518 327 82 12 chr11 19318000 19318254 -102525602 + MLT2B2 LTR ERVL 196 556 -6 4 732 23 0 0 0 chr11 19319103 19319126 -102524730 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 220 320 69 10 chr11 19319461 19319562 -102524294 - MER5A DNA MER1_type -6 183 77 4 732 387 0 0 0 chr11 19322070 19322113 -102521743 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 732 3420 43 5 5 chr11 19322683 19323079 -102520777 - MTA_Mm LTR MaLR 0 396 1 4 732 220 286 43 0 chr11 19323183 19323253 -102520603 - MIRc SINE MIR -115 153 81 4 732 277 219 16 0 chr11 19323478 19323542 -102520314 + GA-rich Low_complexity Low_complexity 3 67 0 4 732 232 288 41 0 chr11 19323556 19323629 -102520227 - L2a LINE L2 -4 3422 3347 4 732 568 285 141 58 chr11 19325480 19325841 -102518015 - MER31B LTR ERV1 -75 391 1 4 732 222 276 13 13 chr11 19326161 19326238 -102517618 + CT-rich Low_complexity Low_complexity 4 80 0 4 732 351 65 0 0 chr11 19326493 19326539 -102517317 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 732 320 284 29 69 chr11 19326545 19326647 -102517209 + PB1D7 SINE Alu 1 98 -22 4 732 22 35 0 0 chr11 19327154 19327183 -102516673 + AT_rich Low_complexity Low_complexity 1 29 0 4 732 74 39 0 0 chr11 19327382 19327484 -102516372 + AT_rich Low_complexity Low_complexity 1 102 0 4 732 353 290 19 141 chr11 19327673 19327886 -102515970 - B3A SINE B2 -10 188 2 4 732 483 335 46 20 chr11 19328610 19328805 -102515051 + MER58A DNA MER1_type 20 219 -5 4 732 348 233 9 47 chr11 19329026 19329132 -102514724 + L1MA4 LINE L1 5836 5932 -368 4 732 316 212 0 39 chr11 19329138 19329241 -102514615 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 732 183 80 0 0 chr11 19329247 19329272 -102514584 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 732 1308 154 0 10 chr11 19329272 19329469 -102514387 - MTC LTR MaLR -13 408 214 4 732 369 284 6 108 chr11 19329588 19329746 -102514110 + B1F SINE Alu 1 142 -7 4 732 23 0 0 0 chr11 19329840 19329863 -102513993 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 324 102 0 0 chr11 19330239 19330288 -102513568 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 732 1170 256 71 4 chr11 19330308 19330575 -102513281 - B4A SINE B4 -1 291 7 4 732 1287 48 0 0 chr11 19331682 19331828 -102512028 + B1_Mm SINE Alu 2 147 0 4 732 1213 112 17 6 chr11 19331972 19332151 -102511705 - B2_Mm2 SINE B2 -2 193 13 4 732 429 20 0 0 chr11 19332692 19332742 -102511114 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 732 540 0 0 0 chr11 19332884 19332944 -102510912 + (GGCTG)n Simple_repeat Simple_repeat 1 60 0 4 732 288 0 0 0 chr11 19335133 19335165 -102508691 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 4 732 223 350 50 20 chr11 19335519 19335618 -102508238 + MIR SINE MIR 24 125 -83 4 732 358 238 248 0 chr11 19336102 19336207 -102507649 + RSINE1 SINE B4 1 131 -34 4 732 261 0 0 0 chr11 19336209 19336238 -102507618 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 732 308 231 62 36 chr11 19336888 19337000 -102506856 + Lx7 LINE L1 7247 7361 -335 4 732 23 0 0 0 chr11 19337145 19337168 -102506688 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 882 156 0 0 chr11 19337710 19337864 -102505992 + GA-rich Low_complexity Low_complexity 1 154 0 4 732 898 156 12 0 chr11 19337883 19338056 -102505800 + GA-rich Low_complexity Low_complexity 1 175 0 4 732 4113 139 93 82 chr11 19338063 19338839 -102505017 + RMER19B LTR ERVK 1 772 -130 4 732 3069 31 3 0 chr11 19338839 19339196 -102504660 - L1Md_F2 LINE L1 0 6582 6225 4 732 4113 139 93 82 chr11 19339196 19339299 -102504557 + RMER19B LTR ERVK 773 890 -12 4 732 228 380 86 13 chr11 19340065 19340217 -102503639 + ORR1E LTR MaLR 7 169 -190 4 732 758 196 35 0 chr11 19341581 19341724 -102502132 + B1_Mur1 SINE Alu 2 149 0 4 732 408 301 34 10 chr11 19345547 19345706 -102498150 - MLT1A0 LTR MaLR -15 375 196 4 732 282 29 0 0 chr11 19346402 19346437 -102497419 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 732 1491 223 104 8 chr11 19346494 19346558 -102497298 + MTD LTR MaLR 1 64 -355 4 732 243 0 0 0 chr11 19346558 19346585 -102497271 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 732 1491 223 104 8 chr11 19346585 19346895 -102496961 + MTD LTR MaLR 65 411 -8 4 732 953 242 26 5 chr11 19346975 19347166 -102496690 + Lx8 LINE L1 7142 7336 -137 4 732 500 304 15 7 chr11 19347476 19347612 -102496244 + ID_B1 SINE B4 82 218 -6 4 732 945 60 0 36 chr11 19351723 19351861 -102491995 - L1_Mus1 LINE L1 -1 6566 6434 4 732 21 71 0 0 chr11 19352350 19352392 -102491464 + AT_rich Low_complexity Low_complexity 1 42 0 4 732 1132 83 0 0 chr11 19353408 19353553 -102490303 + B1_Mus1 SINE Alu 3 147 -1 4 732 261 0 0 0 chr11 19353553 19353582 -102490274 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 4 732 668 259 79 51 chr11 19357628 19357844 -102486012 + MTE2a LTR MaLR 7 228 -151 4 732 765 218 6 18 chr11 19357907 19358075 -102485781 + MTE2a LTR MaLR 205 370 -9 4 732 2322 120 49 0 chr11 19359528 19359896 -102483960 - ORR1B1 LTR MaLR -8 386 1 4 732 227 383 13 60 chr11 19362427 19362577 -102481279 + MamRep38 DNA hAT 129 271 -24 4 732 435 113 0 0 chr11 19364580 19364651 -102479205 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 732 180 0 0 0 chr11 19364798 19364818 -102479038 + (A)n Simple_repeat Simple_repeat 1 20 0 4 732 1281 175 9 0 chr11 19366382 19366605 -102477251 + URR1A DNA MER1_type 2 226 0 4 732 1790 165 131 8 chr11 19367344 19367711 -102476145 + MTD LTR MaLR 8 419 0 4 732 277 178 0 0 chr11 19367956 19368001 -102475855 + MTEb LTR MaLR 40 84 -275 4 732 354 249 27 69 chr11 19368035 19368183 -102475673 + MTEb LTR MaLR 207 368 -11 4 732 1304 114 119 0 chr11 19369130 19369331 -102474525 - URR1A DNA MER1_type 0 226 2 4 732 238 279 70 144 chr11 19369719 19369920 -102473936 - ORR1E LTR MaLR -121 238 53 4 732 1342 254 112 42 chr11 19370189 19370637 -102473219 + Lx8 LINE L1 6847 7325 -148 4 732 378 0 0 0 chr11 19370637 19370679 -102473177 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 732 369 240 164 13 chr11 19372102 19372254 -102471602 - MTEa LTR MaLR 0 379 205 4 732 408 250 22 59 chr11 19372646 19372815 -102471041 - MER58A DNA MER1_type -2126 294 6 4 732 648 224 12 0 chr11 19373209 19373469 -102470387 + CT-rich Low_complexity Low_complexity 1 263 0 4 732 212 140 0 85 chr11 19374514 19374543 -102469313 + T-rich Low_complexity Low_complexity 18 45 0 4 732 1211 54 0 0 chr11 19374543 19374690 -102469166 - B1_Mus2 SINE Alu 0 147 1 4 732 212 140 0 85 chr11 19374690 19374707 -102469149 + T-rich Low_complexity Low_complexity 3 17 0 4 732 234 91 0 0 chr11 19374708 19374741 -102469115 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 4 732 196 196 105 18 chr11 19376485 19376542 -102467314 + MIR3 SINE MIR 3 64 -144 4 732 267 241 0 0 chr11 19376699 19376782 -102467074 + (ATGGTG)n Simple_repeat Simple_repeat 5 87 0 4 732 1469 63 26 5 chr11 19377248 19377438 -102466418 - B2_Mm2 SINE B2 -1 194 1 4 732 454 311 93 4 chr11 19377527 19377753 -102466103 - MER63D DNA AcHobo -750 311 66 4 732 201 129 0 0 chr11 19377758 19377789 -102466067 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 732 180 0 0 0 chr11 19379479 19379499 -102464357 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 732 322 193 8 48 chr11 19379806 19379931 -102463925 + GA-rich Low_complexity Low_complexity 2 121 0 4 732 186 270 91 39 chr11 19380385 19380462 -102463394 + L2 LINE L2 429 509 -2910 4 732 16441 82 26 5 chr11 19380905 19383138 -102460718 + L1VL4 LINE L1 595 2864 -1050 4 732 1112 65 0 13 chr11 19383138 19383293 -102460563 + (GAAA)n Simple_repeat Simple_repeat 3 155 0 4 732 16441 103 31 6 chr11 19383293 19384390 -102459466 + L1VL4 LINE L1 2865 4005 -1881 4 732 6721 95 13 98 chr11 19384400 19384459 -102459397 + Lx2 LINE L1 5587 5640 -1357 4 732 4270 49 60 8 chr11 19384459 19384991 -102458865 + LTRIS2 LTR ERV1 5 564 0 4 732 6721 108 22 89 chr11 19384991 19386303 -102457553 + Lx2 LINE L1 5641 6998 -2 4 732 449 305 99 92 chr11 19386941 19387371 -102456485 - L1ME1 LINE L1 -36 6143 5691 4 732 781 232 82 0 chr11 19387371 19387565 -102456291 + B3 SINE B2 2 211 -5 4 732 449 307 307 52 chr11 19387565 19387865 -102455991 - L1ME1 LINE L1 -489 5690 5334 4 732 216 0 0 0 chr11 19387903 19387927 -102455929 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 732 591 273 24 12 chr11 19387987 19388154 -102455702 - B4A SINE B4 -77 215 47 5 732 223 299 47 135 chr11 19388160 19388180 -102455676 + B4 SINE B4 65 80 -212 5 732 279 0 0 0 chr11 19388180 19388211 -102455645 + (TTG)n Simple_repeat Simple_repeat 2 32 0 5 732 223 299 47 135 chr11 19388211 19388223 -102455633 + B4 SINE B4 81 82 -210 5 732 513 257 27 14 chr11 19388223 19388369 -102455487 + B1F2 SINE Alu 2 149 0 5 732 261 83 0 0 chr11 19388590 19388626 -102455230 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 732 288 316 26 0 chr11 19388760 19388836 -102455020 + ID4 SINE ID 6 83 0 5 732 276 342 25 8 chr11 19389143 19389261 -102454595 - LTR33A LTR ERVL -385 135 16 5 732 867 272 101 15 chr11 19390889 19391225 -102452631 + MLT1A0 LTR MaLR 1 365 0 5 732 362 284 109 0 chr11 19391310 19391459 -102452397 + L1MD3 LINE L1 7822 7967 -28 5 732 342 45 0 0 chr11 19391891 19391935 -102451921 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 732 459 284 8 39 chr11 19392919 19393047 -102450809 + MTEa LTR MaLR 1 124 -255 5 732 910 247 89 20 chr11 19393458 19393641 -102450215 + MTEa LTR MaLR 115 311 -68 5 732 3180 61 0 15 chr11 19393641 19394043 -102449813 - MTA_Mm LTR MaLR 0 396 1 5 732 910 247 89 20 chr11 19394043 19394107 -102449749 + MTEa LTR MaLR 312 379 0 5 732 1240 41 0 0 chr11 19394312 19394459 -102449397 + B1_Mus1 SINE Alu 2 148 0 5 732 21 0 0 0 chr11 19394459 19394480 -102449376 + AT_rich Low_complexity Low_complexity 1 21 0 5 732 496 301 78 70 chr11 19395000 19395317 -102448539 + RLTR17 LTR ERVK 60 414 -278 5 732 387 0 0 0 chr11 19396039 19396082 -102447774 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 732 2062 121 12 58 chr11 19396120 19396462 -102447394 - ORR1A3 LTR MaLR 0 326 1 5 732 196 289 0 0 chr11 19396487 19396532 -102447324 - L2b LINE L2 -7 3368 3324 5 732 1241 47 0 0 chr11 19396568 19396716 -102447140 + B1_Mus1 SINE Alu 1 148 0 5 732 360 111 0 0 chr11 19396716 19396770 -102447086 + (A)n Simple_repeat Simple_repeat 1 54 0 5 732 224 371 54 40 chr11 19396925 19397074 -102446782 - L2b LINE L2 -212 3163 3013 5 732 466 264 306 24 chr11 19397644 19397926 -102445930 + MLT1F1 LTR MaLR 10 371 -198 5 732 3121 98 79 21 chr11 19397920 19398439 -102445417 - RMER4B LTR ERVK -5 580 32 5 732 290 282 149 31 chr11 19398492 19398653 -102445203 + MLT1F1 LTR MaLR 353 532 -16 5 733 630 175 4 4 chr11 19400446 19400696 -102443160 + (TG)n Simple_repeat Simple_repeat 1 250 0 5 733 17603 116 40 3 chr11 19400759 19404077 -102439779 + L1Md_F LINE L1 389 3831 -2052 5 733 283 57 0 0 chr11 19404077 19404112 -102439744 + L1_Mm LINE L1 3143 3177 -2706 5 733 10160 108 13 11 chr11 19404128 19405639 -102438217 - L1_Mm LINE L1 -521 5362 3849 5 733 4846 75 45 12 chr11 19405639 19406305 -102437551 + L1_Mus1 LINE L1 5880 6567 0 5 733 252 0 0 0 chr11 19406704 19406732 -102437124 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 733 674 275 37 46 chr11 19406775 19406992 -102436864 - B3 SINE B2 0 216 2 5 733 356 304 94 64 chr11 19406996 19407258 -102436598 + MTE2b LTR MaLR 11 238 -141 5 733 342 0 0 0 chr11 19407280 19407318 -102436538 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 5 733 284 273 75 9 chr11 19407352 19407457 -102436399 + LTR33A LTR ERVL 70 177 -326 5 733 240 119 33 17 chr11 19407632 19407692 -102436164 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 733 1906 119 9 56 chr11 19408216 19408554 -102435302 - RLTRETN_Mm LTR ERVK 0 322 1 5 733 988 150 45 63 chr11 19408803 19409024 -102434832 + MTE2a LTR MaLR 163 379 0 5 733 543 305 36 6 chr11 19409065 19409233 -102434623 - MLT1G3 LTR MaLR 0 595 423 5 733 290 291 12 0 chr11 19409346 19409432 -102434424 + GA-rich Low_complexity Low_complexity 2 88 0 5 733 1483 155 129 3 chr11 19409541 19409667 -102434189 - Lx9 LINE L1 -6 7638 7484 5 733 459 0 0 0 chr11 19409667 19409718 -102434138 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 733 1483 155 129 3 chr11 19409718 19409902 -102433954 - Lx9 LINE L1 -161 7483 7289 5 733 15823 63 8 2 chr11 19413719 19415101 -102428755 + L1Md_F2 LINE L1 3852 5234 -649 5 733 243 0 0 0 chr11 19415101 19415128 -102428728 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 733 279 0 0 0 chr11 19415128 19415158 -102428698 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 733 15823 50 4 1 chr11 19415158 19415834 -102428022 + L1Md_F2 LINE L1 5235 5924 -658 5 733 4571 8 0 0 chr11 19415837 19416330 -102427526 - MT2_Mm LTR ERVL 0 493 1 5 733 256 0 86 0 chr11 19416330 19416365 -102427491 - MERVL-int LTR ERVL 0 5485 5448 5 733 347 111 26 53 chr11 19416365 19416441 -102427415 - ORR1A3-int LTR MaLR -1323 640 567 5 733 4466 27 2 0 chr11 19416441 19416953 -102426903 - MERVL-int LTR ERVL -114 5371 4859 5 733 7494 8 0 1 chr11 19416936 19417755 -102426101 - MERVL-int LTR ERVL -4667 818 1 5 733 3816 11 121 0 chr11 19417755 19418195 -102425661 - MT2_Mm LTR ERVL 0 493 1 5 733 4755 65 44 9 chr11 19418195 19418831 -102425025 + L1Md_F2 LINE L1 5924 6581 -1 5 733 4070 186 31 72 chr11 19419807 19420750 -102423106 - RMER13B LTR ERVK 0 908 5 5 733 236 250 0 19 chr11 19421494 19421547 -102422309 - L1MCc LINE L1 -5230 1193 1142 5 733 396 0 0 0 chr11 19424092 19424136 -102419720 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 733 257 0 30 0 chr11 19424529 19424562 -102419294 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 5 733 886 225 0 48 chr11 19424913 19425100 -102418756 + B3 SINE B2 2 179 -37 5 733 22 0 0 0 chr11 19425100 19425122 -102418734 + AT_rich Low_complexity Low_complexity 1 22 0 5 733 600 200 6 13 chr11 19425483 19425626 -102418230 + GA-rich Low_complexity Low_complexity 2 144 0 5 733 1434 45 0 0 chr11 19425626 19425804 -102418052 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 733 600 200 6 13 chr11 19425804 19425817 -102418039 + polypurine Low_complexity Low_complexity 145 157 0 5 733 303 49 0 0 chr11 19426402 19426443 -102417413 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 733 644 291 77 47 chr11 19426498 19426849 -102417007 + ORR1E LTR MaLR 5 379 0 5 733 336 102 0 0 chr11 19427389 19427438 -102416418 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 733 253 281 0 33 chr11 19427474 19427566 -102416290 + A-rich Low_complexity Low_complexity 4 92 0 5 733 843 251 14 5 chr11 19428053 19428265 -102415591 + B3 SINE B2 2 215 -1 5 733 351 194 9 53 chr11 19428349 19428463 -102415393 + G-rich Low_complexity Low_complexity 5 113 0 5 733 1424 39 0 6 chr11 19428469 19428649 -102415207 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 5 733 765 0 0 0 chr11 19428649 19428734 -102415122 + (GAA)n Simple_repeat Simple_repeat 3 87 0 5 733 263 222 16 16 chr11 19433051 19433115 -102410741 + MIR SINE MIR 58 121 -141 5 733 305 204 13 125 chr11 19433248 19433341 -102410515 + ORR1D2 LTR MaLR 4 85 -274 5 733 702 168 89 19 chr11 19433333 19433491 -102410365 + ORR1D2 LTR MaLR 199 367 -3 5 733 538 267 124 26 chr11 19434728 19435001 -102408855 + L1MB3 LINE L1 5883 6182 -1 5 733 328 262 168 14 chr11 19435370 19435513 -102408343 + MER20 DNA MER1_type 41 205 -14 5 733 565 303 66 40 chr11 19435547 19435819 -102408037 + B4 SINE B4 2 280 -12 5 733 450 0 0 0 chr11 19435962 19436012 -102407844 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 5 733 200 188 0 0 chr11 19436012 19436044 -102407812 + (TGAG)n Simple_repeat Simple_repeat 1 32 0 5 733 240 309 52 0 chr11 19437078 19437175 -102406681 - L1MD3 LINE L1 -183 7812 7711 5 733 219 196 161 0 chr11 19437299 19437355 -102406501 - PB1D10 SINE Alu -23 94 30 5 733 246 224 132 0 chr11 19437483 19437559 -102406297 - L1MD3 LINE L1 -564 7431 7346 5 733 565 315 29 39 chr11 19438765 19438973 -102404883 - MER58A DNA MER1_type -18 206 1 5 733 249 287 70 92 chr11 19440969 19441013 -102402843 + B1F1 SINE Alu 11 149 0 5 733 267 286 51 0 chr11 19441013 19441111 -102402745 + ID_B1 SINE B4 122 224 0 5 733 269 26 26 0 chr11 19441324 19441362 -102402494 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 733 258 330 43 0 chr11 19441364 19441458 -102402398 - PB1D9 SINE Alu -14 106 9 5 733 202 189 0 0 chr11 19441999 19442036 -102401820 + (CTTA)n Simple_repeat Simple_repeat 3 39 0 5 733 195 307 22 33 chr11 19442650 19442741 -102401115 - MIR SINE MIR -3 259 170 5 733 556 249 48 53 chr11 19443077 19443264 -102400592 + B3A SINE B2 5 190 -8 5 733 528 16 0 0 chr11 19443344 19443405 -102400451 + (GAAAA)n Simple_repeat Simple_repeat 2 62 0 5 733 3865 47 24 0 chr11 19443814 19444278 -102399578 + MT2C_Mm LTR ERVL 1 475 0 5 733 8014 53 4 20 chr11 19444747 19445794 -102398062 - L1_Mus1 LINE L1 0 6567 5538 5 733 279 267 9 98 chr11 19445794 19445906 -102397950 + PB1D10 SINE Alu 9 110 -7 5 733 206 154 26 0 chr11 19445908 19445947 -102397909 + GA-rich Low_complexity Low_complexity 1 40 0 5 733 340 261 0 23 chr11 19446591 19446771 -102397085 + G-rich Low_complexity Low_complexity 1 175 0 5 733 798 249 62 77 chr11 19451409 19451803 -102392053 + L1MA4 LINE L1 5665 6048 -252 5 733 209 221 69 56 chr11 19452025 19452097 -102391759 - L2c LINE L2 0 3387 3315 5 733 3570 230 50 10 chr11 19452725 19453644 -102390212 - RCHARR1 DNA MER1_type 0 974 19 5 733 576 252 24 0 chr11 19453949 19454076 -102389780 + B1_Mur1 SINE Alu 2 131 -18 5 733 189 0 0 0 chr11 19454105 19454126 -102389730 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 5 733 297 0 0 0 chr11 19457075 19457108 -102386748 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 733 753 297 29 12 chr11 19458352 19458594 -102385262 - B4A SINE B4 -46 246 1 5 733 243 0 0 0 chr11 19459320 19459347 -102384509 + (A)n Simple_repeat Simple_repeat 1 27 0 5 733 420 256 131 8 chr11 19461453 19461583 -102382273 + RSINE1 SINE B4 2 147 -18 5 733 513 0 0 0 chr11 19461607 19461664 -102382192 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 733 315 0 0 0 chr11 19461664 19461698 -102382158 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 733 409 213 64 0 chr11 19462063 19462157 -102381699 + PB1D10 SINE Alu 18 117 0 5 733 510 250 53 149 chr11 19464532 19464720 -102379136 + B4 SINE B4 33 202 -90 5 733 840 181 280 17 chr11 19464728 19465021 -102378835 - MTD LTR MaLR -40 379 10 5 733 323 323 13 129 chr11 19465141 19465322 -102378534 - MER33 DNA MER1_type -118 206 52 5 733 4509 10 2 0 chr11 19465322 19465814 -102378042 - MT2_Mm LTR ERVL 0 493 1 6 733 323 323 13 129 chr11 19465814 19465856 -102378000 - MER33 DNA MER1_type -273 51 10 5 733 3053 27 0 76 chr11 19466139 19466536 -102377320 - IAPLTR1_Mm LTR ERVK 0 367 1 6 733 9585 27 3 0 chr11 19466536 19467615 -102376241 - IAPEz-int LTR ERVK 0 6481 5400 6 733 21173 40 42 15 chr11 19467590 19470185 -102373671 - IAPEz-int LTR ERVK -3807 2674 8 6 733 3085 22 0 76 chr11 19470185 19470582 -102373274 - IAPLTR1_Mm LTR ERVK 0 367 1 6 733 255 83 50 0 chr11 19470752 19470812 -102373044 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 733 384 235 25 23 chr11 19472180 19472292 -102371564 - MLT1D LTR MaLR -9 496 354 6 733 441 103 0 0 chr11 19472345 19472413 -102371443 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 733 216 175 0 24 chr11 19472428 19472469 -102371387 + GA-rich Low_complexity Low_complexity 3 42 0 6 733 633 331 88 23 chr11 19472499 19472851 -102371005 - MLT1D LTR MaLR -130 375 1 6 733 540 289 246 30 chr11 19474877 19475210 -102368646 - RMER5 LTR ERV1 -4 530 126 6 733 339 25 0 0 chr11 19475282 19475322 -102368534 + (GTTTG)n Simple_repeat Simple_repeat 3 42 0 6 733 467 255 58 7 chr11 19476077 19476215 -102367641 + LTR33 LTR ERVL 367 511 -4 6 733 1123 143 23 9 chr11 19477527 19477745 -102366111 + URR1A DNA MER1_type 6 226 0 6 733 411 270 57 26 chr11 19477572 19477766 -102366090 - CYRA11_Mm Unknown Y-chromosome -272 345 146 6 733 186 128 0 0 chr11 19477913 19477952 -102365904 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 6 733 1221 106 0 0 chr11 19477961 19478141 -102365715 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 733 236 278 96 14 chr11 19478181 19478254 -102365602 - ID4_ SINE ID 0 83 5 6 733 228 230 124 0 chr11 19478726 19478839 -102365017 - L1M2 LINE L1 -1318 4825 4699 6 733 3937 142 94 35 chr11 19479256 19480190 -102363666 - RMER17B LTR ERVK 0 958 4 6 733 486 108 0 0 chr11 19480214 19480288 -102363568 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 733 782 213 138 0 chr11 19480403 19480591 -102363265 + B3 SINE B2 1 214 -2 6 733 902 136 0 6 chr11 19481563 19481719 -102362137 + (TCC)n Simple_repeat Simple_repeat 1 155 0 6 733 3403 152 7 63 chr11 19485387 19486067 -102357789 + RLTR26 LTR ERVK 1 642 0 6 733 252 250 141 0 chr11 19486290 19486354 -102357502 - ID4 SINE ID -9 74 2 6 733 285 321 9 36 chr11 19486460 19486570 -102357286 - MIRc SINE MIR -116 152 46 6 733 218 175 61 0 chr11 19486703 19486817 -102357039 + (TA)n Simple_repeat Simple_repeat 1 121 0 6 733 282 327 35 23 chr11 19487009 19487181 -102356675 - L1MEe LINE L1 -1901 4245 4072 6 733 330 205 0 0 chr11 19487561 19487639 -102356217 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 733 376 289 86 80 chr11 19487639 19487801 -102356055 - RSINE1 SINE B4 0 165 3 6 733 360 273 30 0 chr11 19487809 19487941 -102355915 - L1M2 LINE L1 -476 5821 5686 6 733 1710 173 44 44 chr11 19489136 19489499 -102354357 - ORR1B2 LTR MaLR 0 367 5 6 733 1065 106 0 0 chr11 19489503 19489683 -102354173 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 733 863 152 0 9 chr11 19489718 19490143 -102353713 + (TG)n Simple_repeat Simple_repeat 1 420 0 6 733 242 211 0 0 chr11 19490147 19490204 -102353652 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 6 733 663 179 0 0 chr11 19490205 19490384 -102353472 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 733 591 196 0 0 chr11 19490439 19490612 -102353244 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 733 260 221 220 8 chr11 19490835 19490967 -102352889 - L1M2 LINE L1 -1953 4190 4031 6 733 26 0 0 0 chr11 19491003 19491029 -102352827 + AT_rich Low_complexity Low_complexity 1 26 0 6 733 300 252 130 43 chr11 19491281 19491443 -102352413 - L1MEe LINE L1 -3723 2443 2268 6 733 479 254 0 0 chr11 19491640 19491774 -102352082 + L1M2 LINE L1 4660 4793 -1350 6 733 1737 33 9 0 chr11 19492335 19492548 -102351308 + L1Md_A LINE L1 6368 6582 0 6 733 350 244 37 0 chr11 19492940 19493022 -102350834 + ORR1D2 LTR MaLR 1 85 -285 6 733 271 125 148 15 chr11 19493030 19493099 -102350757 + MTC LTR MaLR 305 408 -13 6 733 240 139 0 0 chr11 19493102 19493138 -102350718 + ORR1D2 LTR MaLR 72 107 -272 6 733 324 318 31 8 chr11 19493214 19493344 -102350512 + ORR1D2 LTR MaLR 235 367 -12 6 733 882 0 0 0 chr11 19494375 19494473 -102349383 + (GGAAA)n Simple_repeat Simple_repeat 1 98 0 6 733 255 31 0 0 chr11 19494711 19494743 -102349113 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 6 733 2049 119 45 0 chr11 19495777 19496088 -102347768 + ORR1A2 LTR MaLR 3 327 0 6 733 1197 201 175 6 chr11 19496692 19497012 -102346844 - MTD LTR MaLR 0 374 1 6 733 5225 202 69 57 chr11 19497019 19498360 -102345496 - MTD-int LTR MaLR -13 1357 1 6 733 1306 220 145 20 chr11 19498372 19498724 -102345132 - MTD LTR MaLR -14 405 10 6 733 277 43 43 0 chr11 19498726 19498773 -102345083 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 733 430 218 118 0 chr11 19498795 19498905 -102344951 - ORR1D1 LTR MaLR -251 123 1 6 733 270 0 0 0 chr11 19499109 19499139 -102344717 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 6 733 446 139 12 0 chr11 19499183 19499269 -102344587 + CT-rich Low_complexity Low_complexity 1 87 0 6 733 369 0 0 0 chr11 19499269 19499310 -102344546 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 733 22 0 0 0 chr11 19500793 19500815 -102343041 + AT_rich Low_complexity Low_complexity 1 22 0 1 733 22 0 0 0 chr11 19500835 19500857 -102342999 + AT_rich Low_complexity Low_complexity 1 22 0 2 733 556 272 152 22 chr11 19500877 19501061 -102342795 - B3 SINE B2 -8 208 1 3 733 619 171 34 0 chr11 19505209 19505326 -102338530 + B1F2 SINE Alu 29 149 0 4 733 980 218 48 0 chr11 19507682 19507888 -102335968 - B3 SINE B2 0 216 1 5 733 577 177 93 26 chr11 19508064 19508215 -102335641 + B2_Mm2 SINE B2 1 161 -34 6 733 243 88 0 0 chr11 19508215 19508249 -102335607 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 7 733 841 265 49 16 chr11 19509104 19509411 -102334445 - MER31A LTR ERV1 -113 372 56 8 733 21 0 0 0 chr11 19509543 19509564 -102334292 + AT_rich Low_complexity Low_complexity 1 21 0 9 733 1546 174 255 12 chr11 19511340 19511677 -102332179 + MTD LTR MaLR 1 419 0 1 733 399 296 121 61 chr11 19512165 19512363 -102331493 + MLT1A0 LTR MaLR 1 210 -155 1 733 583 278 25 0 chr11 19515205 19515367 -102328489 - B3A SINE B2 -30 168 3 1 733 324 287 109 0 chr11 19515388 19515489 -102328367 - B1F SINE Alu -15 134 23 1 733 942 48 0 0 chr11 19515537 19515661 -102328195 + B1_Mus1 SINE Alu 25 148 0 1 733 297 264 50 85 chr11 19515539 19515680 -102328176 + B4A SINE B4 111 246 -46 1 733 302 67 22 0 chr11 19515680 19515725 -102328131 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 733 669 25 0 0 chr11 19515725 19515804 -102328052 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 1 733 1246 163 18 31 chr11 19516000 19516228 -102327628 + URR1B DNA MER1_type 1 225 0 1 733 347 280 194 28 chr11 19516380 19516560 -102327296 + RMER15 LTR ERVL 352 561 -14 1 733 281 289 58 0 chr11 19516825 19516929 -102326927 - MLT1N2 LTR MaLR -4 558 449 2 733 243 278 11 22 chr11 19516848 19516940 -102326916 - LTR33B LTR ERVL -26 477 387 2 733 299 330 90 0 chr11 19517177 19517277 -102326579 + PB1D10 SINE Alu 9 117 0 2 733 1355 237 35 6 chr11 19517518 19517832 -102326024 - MTEb LTR MaLR -56 323 1 2 733 185 189 54 0 chr11 19517835 19517872 -102325984 + MER5A DNA MER1_type 115 153 -36 2 733 411 113 0 0 chr11 19519207 19519269 -102324587 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 733 751 319 44 61 chr11 19520003 19520461 -102323395 + MLT1D LTR MaLR 41 490 -15 2 733 405 231 73 5 chr11 19520494 19520637 -102323219 - MER20 DNA MER1_type -626 157 1 2 733 1055 99 0 12 chr11 19520759 19520923 -102322933 + (GGAGA)n Simple_repeat Simple_repeat 5 166 0 2 733 211 266 43 72 chr11 19520966 19521035 -102322821 + PB1D10 SINE Alu 43 109 -8 2 733 381 136 0 0 chr11 19521213 19521279 -102322577 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 733 243 333 0 0 chr11 19521520 19521601 -102322255 - ID4 SINE ID -2 81 1 3 733 921 277 20 53 chr11 19521668 19521912 -102321944 - B4 SINE B4 -14 278 43 3 733 5304 117 38 1 chr11 19521927 19522860 -102320996 - Lx2 LINE L1 -17 6983 5899 3 733 7792 76 13 29 chr11 19522845 19523202 -102320654 - L1VL4 LINE L1 -1563 1996 1663 3 733 3405 57 39 5 chr11 19523202 19523641 -102320215 - L1Md_F2 LINE L1 0 6582 6129 3 733 7792 86 11 20 chr11 19523641 19525112 -102318744 - L1VL4 LINE L1 -1897 1662 191 3 733 277 189 0 0 chr11 19525117 19525170 -102318686 - B4A SINE B4 -238 54 2 3 733 429 54 0 0 chr11 19525191 19525247 -102318609 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 733 229 130 22 0 chr11 19526274 19526320 -102317536 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 733 1894 116 13 10 chr11 19526718 19527031 -102316825 - ORR1A3 LTR MaLR -8 318 5 3 733 202 267 0 88 chr11 19527545 19527738 -102316118 + (CACTG)n Simple_repeat Simple_repeat 4 179 0 3 733 1066 224 9 5 chr11 19527990 19528205 -102315651 + B3 SINE B2 1 216 0 4 733 1117 89 0 0 chr11 19528283 19528429 -102315427 + B1_Mus1 SINE Alu 1 146 -2 4 733 322 229 41 109 chr11 19528448 19528595 -102315261 + MLT1E1 LTR MaLR 305 441 -213 4 733 351 240 39 29 chr11 19528618 19528721 -102315135 - MTEa LTR MaLR -2 377 274 4 733 1056 55 0 52 chr11 19528988 19529142 -102314714 - L1_Mus2 LINE L1 -2 6564 6419 4 733 222 268 0 0 chr11 19529320 19529391 -102314465 + T-rich Low_complexity Low_complexity 5 75 0 4 733 849 38 1 0 chr11 19529403 19529516 -102314340 - L1_Mus2 LINE L1 -227 6357 6241 4 91 1733 239 130 29 chr11 19529543 19530126 -102313730 - Lx8 LINE L1 -5 7468 6827 4 734 964 251 127 21 chr11 19533152 19533538 -102310318 - L1M5 LINE L1 -340 5784 5358 4 734 384 123 0 0 chr11 19534356 19534429 -102309427 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 734 716 270 22 22 chr11 19534432 19534614 -102309242 - B3A SINE B2 -16 182 1 4 734 271 340 28 21 chr11 19534701 19534845 -102309011 + L1M5 LINE L1 5521 5665 -459 5 734 293 227 8 32 chr11 19534875 19534998 -102308858 + GA-rich Low_complexity Low_complexity 4 123 0 5 734 3089 229 73 14 chr11 19535668 19536318 -102307538 - RCHARR1 DNA MER1_type -34 940 243 5 734 4105 169 106 48 chr11 19536318 19536549 -102307307 - RMER13B LTR ERVK 0 908 607 5 734 492 18 0 0 chr11 19536549 19536606 -102307250 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 734 4105 169 106 48 chr11 19536606 19537232 -102306624 - RMER13B LTR ERVK -302 606 1 5 734 3089 229 73 14 chr11 19537232 19537463 -102306393 - RCHARR1 DNA MER1_type -732 242 7 5 734 432 0 0 0 chr11 19537738 19537786 -102306070 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 734 252 0 0 0 chr11 19538066 19538094 -102305762 + (ATG)n Simple_repeat Simple_repeat 1 28 0 5 734 897 59 0 0 chr11 19538594 19538712 -102305144 + B1_Mus1 SINE Alu 22 139 -9 5 734 272 48 0 23 chr11 19538712 19538755 -102305101 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 5 734 1141 203 168 6 chr11 19539861 19540062 -102303794 + ORR1D1 LTR MaLR 1 228 -146 5 734 203 88 29 0 chr11 19540062 19540096 -102303760 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 6 734 1141 203 168 6 chr11 19540096 19540216 -102303640 + ORR1D1 LTR MaLR 229 373 -1 5 734 1239 191 83 0 chr11 19540216 19540493 -102303363 - ORR1D1 LTR MaLR -74 300 1 6 734 619 326 62 11 chr11 19541736 19542012 -102301844 - MER82 DNA MER2_type -13 640 351 6 734 368 298 75 27 chr11 19542051 19542237 -102301619 + L1MA6 LINE L1 6045 6239 -61 6 734 245 200 0 0 chr11 19542503 19542558 -102301298 - MER82 DNA MER2_type -449 204 150 6 734 740 201 14 0 chr11 19542558 19542697 -102301159 + RSINE1 SINE B4 2 142 -23 6 734 237 128 0 0 chr11 19542698 19542745 -102301111 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 734 399 295 38 51 chr11 19542780 19542937 -102300919 - MER82 DNA MER2_type -495 158 4 6 734 1899 199 152 12 chr11 19543330 19543848 -102300008 + MT2B LTR ERVL 1 591 -10 6 734 1554 210 53 33 chr11 19543876 19544236 -102299620 - MTD LTR MaLR 0 419 53 6 734 506 286 72 63 chr11 19544784 19545131 -102298725 + L1MC5 LINE L1 7365 7714 -247 6 734 658 253 78 16 chr11 19545571 19545759 -102298097 - B3A SINE B2 -8 187 8 6 734 1482 234 35 3 chr11 19545771 19546114 -102297742 - ORR1D2 LTR MaLR -10 360 7 7 734 3063 170 30 13 chr11 19546114 19546715 -102297141 - RMER19C LTR ERVK 0 611 1 7 734 414 0 0 0 chr11 19546781 19546827 -102297029 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 7 734 1154 88 0 0 chr11 19546832 19546980 -102296876 - B1_Mus1 SINE Alu 0 148 1 7 734 237 111 0 0 chr11 19547347 19547383 -102296473 + MLT1L LTR MaLR 344 379 -231 7 734 212 216 39 0 chr11 19548043 19548094 -102295762 + CT-rich Low_complexity Low_complexity 1 53 0 7 734 734 175 0 0 chr11 19549232 19549358 -102294498 + RSINE1 SINE B4 4 129 -36 7 734 183 93 70 0 chr11 19549387 19549430 -102294426 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 734 1790 152 52 14 chr11 19549542 19549888 -102293968 - ORR1B2 LTR MaLR -8 359 1 7 734 2171 150 84 10 chr11 19550296 19550687 -102293169 + MTC LTR MaLR 1 420 -1 7 734 1123 247 136 55 chr11 19550915 19551502 -102292354 + RMER13A LTR ERVK 1 696 -212 8 734 270 0 0 0 chr11 19551874 19551904 -102291952 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 734 962 289 61 25 chr11 19551926 19552288 -102291568 + MTEb LTR MaLR 1 375 -4 8 734 1162 61 0 13 chr11 19552600 19552749 -102291107 + B1_Mus1 SINE Alu 2 148 0 8 734 200 59 29 0 chr11 19552749 19552783 -102291073 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 8 734 611 192 286 23 chr11 19552805 19552976 -102290880 + B3 SINE B2 1 216 0 8 734 25 51 0 0 chr11 19552980 19553019 -102290837 + AT_rich Low_complexity Low_complexity 1 39 0 8 734 2678 274 116 12 chr11 19553279 19554142 -102289714 - Lx8 LINE L1 -326 7147 6195 8 734 201 108 0 0 chr11 19554204 19554241 -102289615 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 734 527 214 76 8 chr11 19554255 19554373 -102289483 - RSINE1 SINE B4 -37 128 3 8 734 256 229 0 0 chr11 19555702 19555763 -102288093 + L1M5 LINE L1 5646 5706 -418 9 734 1111 248 52 4 chr11 19558623 19558890 -102284966 + B4A SINE B4 8 287 -5 9 734 537 200 9 9 chr11 19559245 19559361 -102284495 - MTD LTR MaLR -108 311 196 9 734 970 198 122 5 chr11 19559381 19559594 -102284262 - Lx5 LINE L1 0 7050 6813 9 734 237 33 0 0 chr11 19559971 19560001 -102283855 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 9 734 5123 55 0 6 chr11 19560253 19560879 -102282977 + L1_Mus1 LINE L1 5946 6567 0 9 734 21 0 0 0 chr11 19560879 19560900 -102282956 + AT_rich Low_complexity Low_complexity 1 21 0 9 734 234 0 0 0 chr11 19562260 19562286 -102281570 + (A)n Simple_repeat Simple_repeat 1 26 0 9 734 192 268 31 123 chr11 19562342 19562504 -102281352 - MIRb SINE MIR -7 261 115 9 734 1237 229 52 14 chr11 19563099 19563284 -102280572 - MTC LTR MaLR -45 376 184 9 734 2175 125 6 15 chr11 19563284 19563616 -102280240 + ORR1A4 LTR MaLR 1 329 0 1 734 1237 229 52 14 chr11 19563616 19563776 -102280080 - MTC LTR MaLR -238 183 20 9 734 360 0 0 0 chr11 19564678 19564718 -102279138 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 734 347 298 145 24 chr11 19564731 19564855 -102279001 - RSINE1 SINE B4 -16 149 11 1 734 1404 94 16 0 chr11 19564869 19565061 -102278795 - B2_Mm2 SINE B2 0 195 1 1 734 343 276 19 105 chr11 19565616 19565778 -102278078 - L1M6 LINE L1 -4659 1837 1690 1 734 2452 291 94 23 chr11 19566583 19567716 -102276140 + RMER15-int LTR ERVL 579 1792 -3207 1 734 1060 272 58 19 chr11 19567718 19568078 -102275778 + Lx8 LINE L1 6752 7125 -348 1 734 471 310 103 6 chr11 19568184 19568359 -102275497 + RMER15 LTR ERVL 371 562 -13 1 734 2146 173 41 22 chr11 19568379 19568792 -102275064 + MTC LTR MaLR 1 421 0 1 734 513 222 0 9 chr11 19569007 19569116 -102274740 + ORR1D1 LTR MaLR 1 108 -266 1 734 997 79 14 0 chr11 19569118 19569257 -102274599 + B1_Mm SINE Alu 7 147 0 1 734 631 153 15 0 chr11 19569257 19569388 -102274468 + GA-rich Low_complexity Low_complexity 3 135 0 1 734 1474 9 5 13 chr11 19569397 19569620 -102274236 + (GAA)n Simple_repeat Simple_repeat 1 221 0 1 734 273 235 22 110 chr11 19569620 19569700 -102274156 + ORR1D1 LTR MaLR 121 194 -190 1 734 853 159 67 26 chr11 19569731 19569925 -102273931 + ORR1D1 LTR MaLR 167 368 -6 1 734 626 0 14 0 chr11 19570885 19570959 -102272897 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 734 306 50 0 0 chr11 19572292 19572332 -102271524 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 734 402 267 23 0 chr11 19572374 19572460 -102271396 + B1_Mus2 SINE Alu 2 89 -58 1 734 1255 106 111 0 chr11 19572466 19572664 -102271192 + URR1A DNA MER1_type 6 225 -1 1 734 427 135 27 13 chr11 19572664 19572724 -102271132 + B1F SINE Alu 83 143 -6 1 734 385 294 35 23 chr11 19572966 19573140 -102270716 - Charlie19a DNA Charlie -14 372 197 1 734 484 305 50 22 chr11 19573516 19573697 -102270159 - MER20 DNA MER1_type 0 219 34 1 734 246 319 0 0 chr11 19574244 19574388 -102269468 + (CA)n Simple_repeat Simple_repeat 2 145 0 1 734 276 368 124 5 chr11 19574938 19575140 -102268716 - MIRb SINE MIR -16 252 27 1 734 243 0 0 0 chr11 19575414 19575441 -102268415 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 734 1104 57 7 0 chr11 19575452 19575593 -102268263 - B1_Mus1 SINE Alu -6 142 1 1 734 432 77 0 0 chr11 19575973 19576038 -102267818 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 734 456 67 0 0 chr11 19576040 19576100 -102267756 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 734 262 284 34 0 chr11 19576249 19576337 -102267519 + L2c LINE L2 3274 3364 -23 1 734 214 347 0 0 chr11 19576863 19576935 -102266921 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 734 3236 14 0 8 chr11 19577176 19577545 -102266311 - L1Md_A LINE L1 0 6582 6217 1 734 1253 182 14 0 chr11 19577692 19577912 -102265944 - URR1B DNA MER1_type -2 223 1 1 734 21 0 0 0 chr11 19578101 19578122 -102265734 + AT_rich Low_complexity Low_complexity 1 21 0 1 734 256 243 68 0 chr11 19578253 19578327 -102265529 - MER5A1 DNA MER1_type -85 81 3 1 734 1021 178 172 37 chr11 19578356 19578682 -102265174 + ORR1D1 LTR MaLR 5 374 0 1 734 270 0 0 0 chr11 19579879 19579909 -102263947 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 734 902 232 38 24 chr11 19581253 19581465 -102262391 - B3 SINE B2 0 216 2 1 734 381 336 56 25 chr11 19581891 19582155 -102261701 + L1MB8 LINE L1 5764 6055 -119 1 734 1883 121 65 15 chr11 19582157 19582494 -102261362 - ORR1B1 LTR MaLR 0 394 41 1 734 362 21 0 21 chr11 19582769 19582817 -102261039 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 1 734 830 179 14 7 chr11 19582823 19582969 -102260887 - B1_Mm SINE Alu 0 147 1 1 734 850 221 44 29 chr11 19583261 19583466 -102260390 + B3 SINE B2 4 211 -5 1 734 1162 81 0 0 chr11 19583487 19583635 -102260221 + B1_Mus1 SINE Alu 1 148 0 1 734 3567 224 55 17 chr11 19584154 19585019 -102258837 - ORR1B1-int LTR MaLR -472 898 1 1 734 1178 198 83 147 chr11 19585019 19585427 -102258429 - ORR1B1 LTR MaLR 0 384 3 1 734 699 208 0 27 chr11 19585691 19585839 -102258017 + B1_Mur1 SINE Alu 6 149 0 1 734 267 157 0 0 chr11 19585870 19585921 -102257935 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 734 731 252 19 46 chr11 19585956 19586172 -102257684 + B3A SINE B2 1 210 -6 1 734 380 219 67 0 chr11 19586340 19586445 -102257411 + B1F SINE Alu 38 149 0 1 734 195 42 0 0 chr11 19586448 19586472 -102257384 + (GAAAA)n Simple_repeat Simple_repeat 1 24 0 1 734 305 247 12 38 chr11 19586472 19586552 -102257304 + ID4 SINE ID 3 80 -3 1 734 868 286 133 59 chr11 19586564 19586873 -102256983 - L1MD2 LINE L1 -175 6184 5878 1 734 522 46 0 0 chr11 19586873 19586938 -102256918 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 1 734 868 286 133 59 chr11 19586938 19587201 -102256655 - L1MD2 LINE L1 -482 5877 5570 1 734 576 70 0 0 chr11 19587311 19587397 -102256459 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 734 674 245 12 52 chr11 19587416 19587588 -102256268 - B3 SINE B2 -33 183 19 1 734 690 288 128 5 chr11 19587588 19588015 -102255841 - L1MD2 LINE L1 -763 5479 5000 1 734 799 237 42 5 chr11 19588011 19588223 -102255633 - L1MC LINE L1 -2313 3833 3614 1 734 266 87 22 0 chr11 19588428 19588474 -102255382 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 734 486 49 0 0 chr11 19588476 19588537 -102255319 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 734 269 328 65 58 chr11 19588885 19588903 -102254953 - ID_B1 SINE B4 0 224 85 1 734 426 311 16 16 chr11 19588903 19589024 -102254832 - B1F2 SINE Alu -25 124 4 1 734 531 0 0 0 chr11 19589083 19589142 -102254714 + (TAG)n Simple_repeat Simple_repeat 3 61 0 1 734 1000 121 104 246 chr11 19589145 19589225 -102254631 - ORR1A4 LTR MaLR -8 321 273 1 734 1182 82 0 0 chr11 19589225 19589372 -102254484 + B1_Mus2 SINE Alu 1 147 0 1 734 1000 121 104 246 chr11 19589372 19589665 -102254191 - ORR1A4 LTR MaLR -57 272 1 1 734 413 265 14 77 chr11 19589718 19589861 -102253995 - RSINE1 SINE B4 -31 134 1 1 734 34986 60 26 19 chr11 19591057 19593108 -102250748 - L1Md_F2 LINE L1 0 6582 4481 1 734 326 22 43 0 chr11 19593108 19593154 -102250702 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 734 34986 72 18 30 chr11 19593154 19597401 -102246455 - L1Md_F2 LINE L1 -1403 4480 330 1 734 243 196 0 0 chr11 19597391 19597437 -102246419 - L1Md_F LINE L1 -6184 335 290 1 734 243 286 207 39 chr11 19597440 19597822 -102246034 - L1MD2 LINE L1 -2975 3171 2726 1 734 1769 249 160 41 chr11 19598399 19599087 -102244769 + RCHARR1 DNA MER1_type 1 770 -204 1 734 190 182 71 57 chr11 19600030 19600100 -102243756 + L3 LINE CR1 799 869 -3620 1 734 723 185 0 0 chr11 19601725 19601871 -102241985 + (CTG)n Simple_repeat Simple_repeat 3 148 0 1 734 1286 39 0 58 chr11 19602805 19603193 -102240663 + (TTCCC)n Simple_repeat Simple_repeat 1 365 0 1 734 295 204 0 0 chr11 19604324 19604378 -102239478 - ID4 SINE ID -28 55 2 1 734 1469 57 0 0 chr11 19604411 19604586 -102239270 + B2_Mm1a SINE B2 1 175 -18 1 734 603 13 0 48 chr11 19604596 19604679 -102239177 + L1Md_T LINE L1 6503 6581 -1 1 734 275 223 284 6 chr11 19604695 19604871 -102238985 + L1MC4a LINE L1 5722 5946 -1936 1 734 217 361 0 0 chr11 19606258 19606319 -102237537 - L2c LINE L2 -234 3153 3093 1 734 217 330 0 33 chr11 19607169 19607260 -102236596 + MIRb SINE MIR 63 150 -118 1 734 344 271 161 21 chr11 19611191 19611334 -102232522 + B3A SINE B2 1 163 -35 1 734 2337 93 19 3 chr11 19611569 19611891 -102231965 + ORR1A2 LTR MaLR 1 327 0 1 734 327 78 0 0 chr11 19612809 19612860 -102230996 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 734 264 217 0 0 chr11 19614819 19614888 -102228968 + T-rich Low_complexity Low_complexity 1 69 0 1 734 424 142 316 9 chr11 19615327 19615441 -102228415 + B1_Mur4 SINE Alu 2 150 0 1 734 381 309 78 0 chr11 19615661 19615865 -102227991 - L1MA6 LINE L1 0 6300 6081 1 734 352 277 43 0 chr11 19615980 19616074 -102227782 + PB1D7 SINE Alu 23 120 0 1 734 21 57 0 0 chr11 19616132 19616167 -102227689 + AT_rich Low_complexity Low_complexity 1 35 0 1 734 637 198 42 63 chr11 19616225 19616414 -102227442 + B3 SINE B2 2 186 -30 1 734 662 229 0 0 chr11 19616452 19616592 -102227264 + B1_Mur1 SINE Alu 10 149 0 1 734 524 15 15 0 chr11 19616627 19616692 -102227164 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 734 225 218 128 40 chr11 19616856 19617004 -102226852 - L1ME4a LINE L1 -5 6119 5959 1 734 354 277 30 0 chr11 19617438 19617539 -102226317 - MER2 DNA MER2_type -10 335 232 1 734 789 240 69 15 chr11 19617752 19617955 -102225901 + B3 SINE B2 1 214 -2 1 734 288 302 177 14 chr11 19619086 19619301 -102224555 - L1MA6 LINE L1 -202 6098 5849 1 734 2393 160 32 19 chr11 19619301 19619830 -102224026 + RMER6A LTR ERVK 124 756 0 1 734 429 20 0 0 chr11 19619864 19619914 -102223942 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 734 278 299 126 0 chr11 19619919 19620046 -102223810 - L1MA6 LINE L1 -507 5793 5651 1 734 415 220 328 0 chr11 19622234 19622392 -102221464 + B3 SINE B2 1 210 -6 1 734 289 126 339 55 chr11 19622906 19623015 -102220841 - B2_Mm2 SINE B2 -9 186 47 1 734 1152 142 11 0 chr11 19623062 19623238 -102220618 - B2_Mm1t SINE B2 -14 179 2 1 734 692 232 189 12 chr11 19623279 19623523 -102220333 - Lx8 LINE L1 -2 7471 7185 1 734 1949 137 71 6 chr11 19623562 19623914 -102219942 - RLTR14 LTR ERV1 -1 381 7 1 734 3546 223 99 62 chr11 19623939 19624295 -102219561 - Lx8 LINE L1 -325 7148 6762 1 734 1241 48 0 0 chr11 19624295 19624442 -102219414 + B1_Mm SINE Alu 1 147 0 1 734 3546 223 99 62 chr11 19624442 19625021 -102218835 - Lx8 LINE L1 -712 6761 6197 1 734 468 0 0 0 chr11 19625021 19625073 -102218783 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 734 3546 281 106 63 chr11 19625073 19625244 -102218612 - Lx8 LINE L1 -1277 6196 5997 1 734 2052 141 116 0 chr11 19625332 19625702 -102218154 + MTC LTR MaLR 9 421 0 1 734 191 369 34 44 chr11 19626243 19626447 -102217409 + MIRb SINE MIR 38 239 -29 1 734 827 214 69 30 chr11 19627013 19627215 -102216641 + B3 SINE B2 1 210 -6 1 734 320 273 25 62 chr11 19627216 19627376 -102216480 + L1MEg LINE L1 1781 1934 -4150 1 734 252 241 236 22 chr11 19629193 19629282 -102214574 - MER5A1 DNA MER1_type -48 118 11 2 734 399 277 149 12 chr11 19629719 19629880 -102213976 - MLT1L LTR MaLR -50 560 378 2 734 1727 112 29 0 chr11 19630271 19630547 -102213309 - ORR1A2 LTR MaLR -43 284 1 2 734 314 279 311 0 chr11 19631391 19631513 -102212343 - RSINE1 SINE B4 -4 161 2 2 734 440 335 140 0 chr11 19631694 19631930 -102211926 - MLT1L-int LTR MaLR -1047 340 72 2 734 5237 109 98 49 chr11 19632213 19633126 -102210730 - RMER17B LTR ERVK 0 958 2 2 734 908 282 41 22 chr11 19633975 19634588 -102209268 + L1MA7 LINE L1 5607 6291 0 2 734 833 214 0 0 chr11 19634892 19635060 -102208796 - MER5B DNA MER1_type -7 171 4 2 734 430 147 0 0 chr11 19635283 19635351 -102208505 + B3A SINE B2 4 71 -127 2 734 1518 204 60 18 chr11 19635351 19635736 -102208120 + RMER17C LTR ERVK 1 401 -9 2 734 409 235 12 0 chr11 19635744 19635829 -102208027 + B3A SINE B2 67 152 -46 2 734 304 40 40 0 chr11 19635830 19635880 -102207976 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 734 21 36 0 0 chr11 19635880 19635908 -102207948 + AT_rich Low_complexity Low_complexity 1 28 0 2 734 719 257 0 7 chr11 19638472 19638621 -102205235 + RSINE1 SINE B4 2 149 -16 2 734 1111 192 24 14 chr11 19638715 19638926 -102204930 - B3 SINE B2 -2 214 2 2 734 283 266 0 132 chr11 19640041 19640132 -102203724 - ID4 SINE ID -3 80 2 2 734 633 47 0 0 chr11 19640276 19640361 -102203495 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 734 309 282 14 42 chr11 19641124 19641261 -102202595 + MLT1A1 LTR MaLR 236 408 0 2 734 275 347 82 34 chr11 19642212 19642418 -102201438 + MIR SINE MIR 32 247 -15 2 734 841 100 35 12 chr11 19642769 19642923 -102200933 + (GGA)n Simple_repeat Simple_repeat 3 161 0 2 734 1475 6 17 0 chr11 19642923 19643097 -102200759 + (GGAGAA)n Simple_repeat Simple_repeat 1 177 0 2 734 774 0 0 0 chr11 19643097 19643183 -102200673 + (GAA)n Simple_repeat Simple_repeat 3 88 0 2 734 1025 251 113 8 chr11 19643304 19643569 -102200287 + Lx6 LINE L1 7168 7460 0 2 734 4984 67 0 0 chr11 19643582 19644206 -102199650 - L1Md_F2 LINE L1 -758 5125 4502 2 734 3820 40 0 0 chr11 19644206 19644656 -102199200 + L1Md_F2 LINE L1 5137 5586 -297 2 734 8279 41 2 7 chr11 19644657 19645657 -102198199 + L1Md_F2 LINE L1 5588 6582 0 2 734 423 0 0 0 chr11 19645862 19645909 -102197947 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 734 209 233 0 0 chr11 19647104 19647147 -102196709 + T-rich Low_complexity Low_complexity 1 43 0 2 734 369 0 0 0 chr11 19648116 19648157 -102195699 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 734 591 206 20 27 chr11 19648694 19648844 -102195012 + B1F SINE Alu 1 149 0 2 734 280 244 12 49 chr11 19648883 19648965 -102194891 + ID4_ SINE ID 5 83 0 2 734 1059 196 75 0 chr11 19648994 19649193 -102194663 - B3 SINE B2 0 216 3 2 734 183 156 0 0 chr11 19649276 19649308 -102194548 + T-rich Low_complexity Low_complexity 1 32 0 2 734 450 0 0 0 chr11 19649779 19649829 -102194027 + (TTG)n Simple_repeat Simple_repeat 2 51 0 2 734 1154 76 7 0 chr11 19649833 19649978 -102193878 - B1_Mus2 SINE Alu 0 147 2 2 734 810 311 74 9 chr11 19650117 19650454 -102193402 - Lx8 LINE L1 -128 7345 6987 2 734 305 321 36 36 chr11 19650482 19650621 -102193235 - MIR SINE MIR -79 183 45 2 734 271 315 96 12 chr11 19650867 19651034 -102192822 - MER20 DNA MER1_type -6 213 33 2 734 302 45 0 22 chr11 19651441 19651486 -102192370 + (TTA)n Simple_repeat Simple_repeat 3 46 0 2 734 180 97 0 0 chr11 19651568 19651599 -102192257 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2 734 236 302 94 8 chr11 19651603 19651720 -102192136 + L1M LINE L1 5297 5423 -701 2 734 436 158 39 0 chr11 19651889 19651967 -102191889 + B4 SINE B4 1 82 -83 2 734 528 16 0 0 chr11 19651967 19652028 -102191828 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 2 734 243 289 44 11 chr11 19652028 19652040 -102191816 + RSINE1 SINE B4 83 94 -71 2 734 797 137 0 14 chr11 19652042 19652183 -102191673 + GA-rich Low_complexity Low_complexity 3 141 0 2 734 334 253 0 35 chr11 19652185 19652271 -102191585 + B4 SINE B4 91 173 -119 2 734 286 353 115 19 chr11 19652768 19652976 -102190880 - LTR82B Low_complexity ERVL -9 821 594 2 734 1611 202 97 0 chr11 19653165 19653527 -102190329 - MTD LTR MaLR 0 419 23 2 734 233 189 0 0 chr11 19653832 19653885 -102189971 - LTR82B Low_complexity ERVL -773 57 5 2 734 4502 50 0 0 chr11 19655176 19655718 -102188138 + L1Md_F2 LINE L1 6040 6581 -1 2 734 1830 219 62 13 chr11 19655863 19656330 -102187526 + Lx9 LINE L1 7140 7629 -15 2 734 33 25 0 0 chr11 19656330 19656370 -102187486 + AT_rich Low_complexity Low_complexity 1 40 0 2 734 203 345 26 8 chr11 19656485 19656602 -102187254 - L2c LINE L2 -13 3374 3256 2 734 237 295 26 0 chr11 19657379 19657457 -102186399 + PB1 SINE Alu 41 120 -7 2 734 312 346 50 55 chr11 19658583 19658782 -102185074 + B3 SINE B2 6 203 -13 2 734 492 241 0 0 chr11 19658782 19658919 -102184937 + (CA)n Simple_repeat Simple_repeat 1 137 0 2 734 872 164 27 7 chr11 19659661 19659808 -102184048 + B1_Mur4 SINE Alu 1 150 0 2 734 281 123 185 0 chr11 19659879 19659944 -102183912 - B1_Mus2 SINE Alu 0 147 71 2 734 290 257 88 9 chr11 19659925 19660039 -102183817 - MLT1B LTR MaLR -149 241 119 2 734 1393 150 9 0 chr11 19660044 19660271 -102183585 + MTC LTR MaLR 2 230 -191 2 734 290 164 28 69 chr11 19660266 19660338 -102183518 - MLT1B LTR MaLR -315 75 7 2 735 223 278 38 3 chr11 19662168 19662261 -102181595 + MIR SINE MIR 10 107 -161 2 735 321 93 0 0 chr11 19663960 19664014 -102179842 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 735 298 345 22 77 chr11 19665783 19665888 -102177968 - MER63A DNA AcHobo 0 210 113 2 735 1311 68 62 0 chr11 19665888 19666065 -102177791 - B2_Mm2 SINE B2 -6 189 2 2 735 298 345 22 77 chr11 19666065 19666141 -102177715 - MER63A DNA AcHobo -98 112 39 2 735 414 0 0 0 chr11 19666629 19666675 -102177181 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 735 256 330 124 20 chr11 19666948 19667114 -102176742 + MIRb SINE MIR 50 228 -40 2 735 248 258 16 0 chr11 19667193 19667255 -102176601 - Cheshire DNA MER1_type 0 2420 2358 2 735 510 281 85 58 chr11 19667375 19667598 -102176258 + B4A SINE B4 47 275 -17 2 735 332 240 0 23 chr11 19667624 19667756 -102176100 + (CA)n Simple_repeat Simple_repeat 2 130 0 2 735 210 200 0 74 chr11 19668531 19668585 -102175271 - PB1D9 SINE Alu -66 54 5 2 735 705 288 109 29 chr11 19668635 19669026 -102174830 - L1MA4 LINE L1 -274 6026 5612 2 735 512 276 108 117 chr11 19669426 19669750 -102174106 + MLT1C LTR MaLR 26 346 -121 2 735 396 233 152 65 chr11 19670174 19670312 -102173544 + B4A SINE B4 143 292 0 2 735 200 324 15 0 chr11 19670312 19670380 -102173476 + GA-rich Low_complexity Low_complexity 1 69 0 2 735 424 248 215 0 chr11 19671025 19671146 -102172710 + B1F2 SINE Alu 3 149 0 2 735 1295 82 53 27 chr11 19671379 19671566 -102172290 + B2_Mm2 SINE B2 1 192 -3 2 735 192 200 140 35 chr11 19672341 19672398 -102171458 - L2c LINE L2 -238 3149 3087 2 735 351 281 154 16 chr11 19672447 19672570 -102171286 + Tigger5 DNA MER2_type 28 167 -2239 2 735 256 308 135 36 chr11 19672587 19672698 -102171158 + Tigger5 DNA MER2_type 2284 2405 -1 2 735 522 189 108 0 chr11 19672803 19672914 -102170942 - ORR1E LTR MaLR -236 123 1 2 735 816 266 39 5 chr11 19673539 19673747 -102170109 + B3 SINE B2 1 215 -1 2 735 686 96 0 9 chr11 19673783 19673888 -102169968 + (TG)n Simple_repeat Simple_repeat 2 105 0 2 735 309 115 19 0 chr11 19674612 19674664 -102169192 - HAL1-3A_ME LINE L1 -831 2027 1975 2 735 423 194 0 0 chr11 19674668 19674771 -102169085 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 735 475 208 0 25 chr11 19675146 19675249 -102168607 - B1F1 SINE Alu -19 130 33 2 735 326 208 51 13 chr11 19675464 19675542 -102168314 + ID4_ SINE ID 1 81 -2 2 735 298 336 95 7 chr11 19675904 19676051 -102167805 - MER117 DNA MER1_type -36 161 2 2 735 368 261 177 28 chr11 19678543 19678724 -102165132 - LTR16A1 LTR ERVL -70 386 179 2 735 181 262 31 62 chr11 19679784 19679849 -102164007 + L2 LINE L2 1786 1848 -1571 2 735 591 214 122 0 chr11 19680180 19680311 -102163545 + B1_Mur2 SINE Alu 3 149 0 2 735 182 324 46 56 chr11 19680853 19680961 -102162895 - MIRc SINE MIR -8 260 154 2 735 1303 107 16 5 chr11 19681651 19681839 -102162017 + B2_Mm2 SINE B2 4 193 -2 2 735 751 47 0 19 chr11 19681841 19681940 -102161916 + (GAA)n Simple_repeat Simple_repeat 3 99 0 2 735 1009 136 0 11 chr11 19681940 19682119 -102161737 + (GGA)n Simple_repeat Simple_repeat 2 178 0 2 735 751 47 0 19 chr11 19682119 19682127 -102161729 + (GAA)n Simple_repeat Simple_repeat 1 8 0 2 735 606 123 44 0 chr11 19682289 19682403 -102161453 + Lx9 LINE L1 7519 7637 -7 2 735 484 281 56 30 chr11 19682411 19682642 -102161214 - L1MB2 LINE L1 -16 6155 5919 2 735 270 0 0 0 chr11 19682674 19682704 -102161152 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 735 284 333 42 21 chr11 19682730 19682825 -102161031 - B4A SINE B4 -10 282 186 2 735 468 284 0 0 chr11 19683081 19683183 -102160673 - PB1D10 SINE Alu -10 107 6 2 735 180 0 0 0 chr11 19683282 19683302 -102160554 + (CTG)n Simple_repeat Simple_repeat 3 22 0 2 735 294 86 47 23 chr11 19683302 19683428 -102160428 + CT-rich Low_complexity Low_complexity 1 129 0 2 735 306 347 75 14 chr11 19683435 19683581 -102160275 - HAL1-3A_ME LINE L1 -420 2438 2284 2 735 241 96 37 37 chr11 19683586 19683640 -102160216 + CT-rich Low_complexity Low_complexity 5 58 0 2 735 924 150 0 0 chr11 19684545 19684705 -102159151 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 2 735 213 94 0 0 chr11 19685309 19685341 -102158515 + (CGGG)n Simple_repeat Simple_repeat 4 35 0 2 735 295 183 65 78 chr11 19685817 19685894 -102157962 - PB1D10 SINE Alu 0 117 42 3 735 2146 118 29 3 chr11 19685936 19686244 -102157612 - MTC LTR MaLR 0 421 106 3 735 1073 97 0 0 chr11 19686244 19686388 -102157468 + B2_Mm2 SINE B2 2 145 -50 3 735 504 0 0 0 chr11 19686390 19686446 -102157410 + (CATA)n Simple_repeat Simple_repeat 2 57 0 3 735 3395 51 0 0 chr11 19686446 19686841 -102157015 + MTA_Mm LTR MaLR 1 395 -1 3 735 324 0 0 0 chr11 19686841 19686877 -102156979 + (CATA)n Simple_repeat Simple_repeat 4 39 0 3 735 495 0 0 0 chr11 19687512 19687567 -102156289 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 735 268 132 192 68 chr11 19688033 19688106 -102155750 - PB1D10 SINE Alu -1 116 35 3 735 2595 111 77 37 chr11 19688635 19689092 -102154764 - IAPLTR2_Mm LTR ERVK 0 475 1 3 735 26885 14 3 0 chr11 19689092 19692039 -102151817 - IAPEz-int LTR ERVK 0 6481 3525 3 735 951 80 24 0 chr11 19692039 19692164 -102151692 - IAPEz-int LTR ERVK -2770 4910 4783 3 735 1799 127 4 4 chr11 19692159 19692421 -102151435 - IAPEz-int LTR ERVK -5183 2497 2236 3 735 450 82 0 32 chr11 19692410 19692473 -102151383 - IAPEz-int LTR ERVK -5062 1419 1359 3 735 3512 63 4 49 chr11 19692473 19693241 -102150615 - IAPEz-int LTR ERVK -5819 662 8 3 735 2605 111 77 37 chr11 19693241 19693698 -102150158 - IAPLTR2_Mm LTR ERVK 0 475 1 3 735 602 240 26 26 chr11 19693913 19694060 -102149796 + ORR1E LTR MaLR 218 364 -15 3 735 4173 244 227 22 chr11 19694060 19694302 -102149554 + ORR1E-int LTR MaLR 2 283 -1297 3 735 330 26 0 0 chr11 19694302 19694341 -102149515 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 735 4173 265 112 30 chr11 19694341 19695391 -102148465 + ORR1E-int LTR MaLR 284 1429 -151 3 735 679 273 12 18 chr11 19695423 19695587 -102148269 - RSINE1 SINE B4 0 165 3 3 735 240 121 0 0 chr11 19695591 19695624 -102148232 + ORR1E-int LTR MaLR 1393 1425 -84 3 735 982 275 29 55 chr11 19695628 19695940 -102147916 + ORR1E LTR MaLR 1 304 -55 3 735 1067 22 0 72 chr11 19695974 19696167 -102147689 + (GGGGA)n Simple_repeat Simple_repeat 1 179 0 3 735 1096 128 50 6 chr11 19696377 19696558 -102147298 + B2_Mm2 SINE B2 1 189 -6 3 735 183 189 26 26 chr11 19696611 19696649 -102147207 - L2c LINE L2 -87 3300 3263 3 735 438 250 30 0 chr11 19698185 19698285 -102145571 + PB1D7 SINE Alu 1 103 -17 3 735 1110 104 45 91 chr11 19698617 19698841 -102145015 - ORR1A4 LTR MaLR -143 251 1 3 735 367 132 0 0 chr11 19699561 19699614 -102144242 + MTD LTR MaLR 4 56 -363 3 735 923 193 62 56 chr11 19699614 19700076 -102143780 + RLTR20A1 LTR ERVK 1 551 0 3 735 1481 211 142 3 chr11 19700076 19700399 -102143457 + MTD LTR MaLR 52 419 0 3 735 291 28 0 0 chr11 19700930 19700966 -102142890 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 735 594 28 0 0 chr11 19700985 19701057 -102142799 + (CTTG)n Simple_repeat Simple_repeat 4 75 0 3 735 366 23 0 0 chr11 19701058 19701101 -102142755 + (GCTG)n Simple_repeat Simple_repeat 4 46 0 3 735 265 276 223 41 chr11 19701359 19701480 -102142376 - RSINE1 SINE B4 -21 144 2 3 735 346 247 46 64 chr11 19701758 19701917 -102141939 + L1_Mur3 LINE L1 5501 5650 -230 3 735 597 251 55 81 chr11 19701935 19701988 -102141868 - L1MA4 LINE L1 -1202 5856 5806 3 735 282 29 0 0 chr11 19701998 19702033 -102141823 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 735 358 350 0 0 chr11 19702033 19702142 -102141714 - PB1D9 SINE Alu -10 110 2 3 735 941 255 37 30 chr11 19702142 19702449 -102141407 - L1MA4 LINE L1 -456 5844 5531 3 735 340 262 24 0 chr11 19702591 19702675 -102141181 + PB1D10 SINE Alu 24 109 -8 3 735 719 235 13 0 chr11 19702679 19702828 -102141028 + RSINE1 SINE B4 2 152 -13 3 735 441 0 0 0 chr11 19702829 19702878 -102140978 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 735 2950 73 30 15 chr11 19702948 19703353 -102140503 + RLTR10A LTR ERVK 1 411 0 3 735 1001 236 9 36 chr11 19703363 19703583 -102140273 + B3 SINE B2 2 215 -1 3 735 626 129 164 0 chr11 19703599 19703715 -102140141 + B1_Mus2 SINE Alu 1 135 -12 3 735 465 112 183 43 chr11 19703716 19703809 -102140047 + B1_Mus2 SINE Alu 41 146 -1 3 735 1226 102 40 0 chr11 19703859 19704036 -102139820 - B2_Mm2 SINE B2 -1 194 11 3 735 2633 204 82 14 chr11 19704123 19704698 -102139158 + RMER1C Other Other 579 1192 -150 3 735 310 133 321 9 chr11 19704705 19704817 -102139039 - B2_Mm2 SINE B2 -2 193 47 3 735 1337 85 11 0 chr11 19704830 19705007 -102138849 - B2_Mm1t SINE B2 -14 179 1 3 735 514 218 28 21 chr11 19705008 19705153 -102138703 + RMER1C Other Other 1196 1341 -1 3 735 21 36 0 0 chr11 19705214 19705242 -102138614 + AT_rich Low_complexity Low_complexity 1 28 0 3 735 231 304 18 0 chr11 19705626 19705682 -102138174 + ID_B1 SINE B4 101 157 -67 3 735 593 272 5 96 chr11 19705682 19705881 -102137975 + B3A SINE B2 2 182 -16 3 735 27 29 0 0 chr11 19705894 19705928 -102137928 + AT_rich Low_complexity Low_complexity 1 34 0 3 735 459 258 11 68 chr11 19705991 19706182 -102137674 + L1M3 LINE L1 2745 2924 -3216 3 735 189 0 0 0 chr11 19706341 19706362 -102137494 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 735 1223 21 14 0 chr11 19706391 19706535 -102137321 - B1_Mm SINE Alu 0 147 2 3 735 312 288 142 29 chr11 19706656 19706931 -102136925 + RLTR15 LTR ERVK 45 350 -9 3 735 204 275 33 107 chr11 19707106 19707228 -102136628 - MIRc SINE MIR -125 143 31 3 735 441 0 0 0 chr11 19707452 19707501 -102136355 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 735 565 230 0 17 chr11 19707527 19707642 -102136214 - PB1D7 SINE Alu -3 117 5 3 735 423 233 0 0 chr11 19708361 19708434 -102135422 - B4 SINE B4 -3 289 217 3 735 3395 25 8 8 chr11 19708455 19708851 -102135005 - MTA_Mm LTR MaLR 0 396 1 3 735 4279 25 2 0 chr11 19708960 19709441 -102134415 + LTRIS_Mm LTR ERV1 1 482 0 3 735 411 73 0 0 chr11 19709564 19709619 -102134237 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 735 269 365 21 0 chr11 19710018 19710114 -102133742 - B4 SINE B4 -192 100 3 3 735 843 156 0 0 chr11 19710134 19710313 -102133543 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 735 758 161 0 0 chr11 19710425 19710549 -102133307 - RLTR13D1 LTR ERVK -682 124 1 3 735 1761 87 21 11 chr11 19710866 19711145 -102132711 + MusHAL1 LINE L1 1829 2110 -602 3 735 523 248 24 78 chr11 19711162 19711328 -102132528 - RMER10B LTR ERVL -48 350 194 3 735 611 228 154 13 chr11 19711295 19711522 -102132334 - RMER10B LTR ERVL -118 280 22 3 735 1276 117 16 279 chr11 19712419 19712975 -102130881 + RMER17C LTR ERVK 1 410 0 3 735 230 303 40 0 chr11 19712992 19713068 -102130788 + ID4_ SINE ID 2 80 -3 3 735 182 37 0 36 chr11 19713071 19713099 -102130757 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 735 838 181 0 0 chr11 19713099 19713237 -102130619 - B1_Mur4 SINE Alu -11 139 2 3 735 1611 191 69 20 chr11 19713430 19713821 -102130035 - RMER17C LTR ERVK 0 410 1 3 735 3229 102 82 14 chr11 19713821 19714159 -102129697 - RMER17C-int LTR ERVK 0 3238 2900 3 735 216 0 0 0 chr11 19714159 19714183 -102129673 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 735 3229 102 82 14 chr11 19714183 19714342 -102129514 - RMER17C-int LTR ERVK -339 2899 2708 3 735 1815 194 17 79 chr11 19714428 19714831 -102129025 + RLTR1B LTR ERV1 135 512 0 3 735 1236 73 6 0 chr11 19714831 19714996 -102128860 - RMER17C-int LTR ERVK -528 2710 2545 3 735 1128 49 0 0 chr11 19714997 19715140 -102128716 + B1_Mus2 SINE Alu 5 147 0 3 735 6528 97 52 18 chr11 19715164 19716132 -102127724 - RMER17C-int LTR ERVK -951 2287 1287 3 735 396 0 0 0 chr11 19716191 19716235 -102127621 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 3 735 1037 89 0 0 chr11 19716235 19716364 -102127492 - B1_Mus1 SINE Alu -8 140 12 3 735 2471 236 144 89 chr11 19716364 19717593 -102126263 - RMER17C-int LTR ERVK -1933 1305 9 3 735 1575 175 25 76 chr11 19717603 19717622 -102126234 - RMER17C LTR ERVK 0 410 389 3 735 216 86 0 0 chr11 19717622 19717657 -102126199 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 3 735 1575 175 25 76 chr11 19717657 19718069 -102125787 - RMER17C LTR ERVK -22 388 1 3 735 589 226 142 45 chr11 19718421 19718709 -102125147 - L1MB1 LINE L1 -72 6117 5802 3 735 368 225 64 127 chr11 19718963 19719136 -102124720 + B4 SINE B4 62 223 -69 3 735 765 117 101 8 chr11 19719009 19719138 -102124718 + B1_Mur1 SINE Alu 9 149 0 3 735 377 293 0 10 chr11 19719419 19719519 -102124337 + PB1D10 SINE Alu 12 110 -7 3 735 1113 118 0 0 chr11 19720157 19720335 -102123521 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 735 695 256 12 18 chr11 19720390 19720553 -102123303 + B3A SINE B2 1 162 -36 3 735 847 232 44 10 chr11 19720600 19720805 -102123051 + B3 SINE B2 5 216 0 3 735 894 138 7 27 chr11 19720828 19720977 -102122879 + B1_Mur3 SINE Alu 1 146 -3 3 735 195 100 0 0 chr11 19721020 19721050 -102122806 + (G)n Simple_repeat Simple_repeat 1 30 0 3 735 2285 184 96 44 chr11 19721577 19721811 -102122045 + Lx5 LINE L1 6497 6727 -323 3 735 198 0 0 0 chr11 19721811 19721833 -102122023 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 735 2285 184 96 44 chr11 19721833 19722120 -102121736 + Lx5 LINE L1 6728 7044 -6 3 735 270 0 0 0 chr11 19722120 19722150 -102121706 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3 735 303 28 0 0 chr11 19722181 19722217 -102121639 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 735 432 248 113 28 chr11 19722218 19722359 -102121497 + ORR1D2 LTR MaLR 215 367 -3 3 735 453 36 0 0 chr11 19722361 19722416 -102121440 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 735 370 262 15 19 chr11 19722571 19722687 -102121169 - PB1D10 SINE Alu 0 117 1 3 735 198 281 82 127 chr11 19723410 19723520 -102120336 - MER5B DNA MER1_type -2 176 72 3 735 560 195 77 15 chr11 19723693 19723823 -102120033 - Lx7 LINE L1 -518 7178 7041 3 735 575 264 50 0 chr11 19723820 19724002 -102119854 + Lx7 LINE L1 7216 7406 -290 3 735 2659 140 34 10 chr11 19724104 19724515 -102119341 + MTC LTR MaLR 1 421 0 3 735 249 164 151 0 chr11 19724517 19724590 -102119266 + Lx7 LINE L1 7613 7696 0 3 735 1490 60 16 0 chr11 19724602 19724786 -102119070 + B2_Mm2 SINE B2 2 188 -7 3 735 232 214 325 18 chr11 19724848 19724962 -102118894 + RSINE1 SINE B4 5 153 -12 3 735 332 415 0 0 chr11 19725038 19725214 -102118642 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 735 347 353 23 6 chr11 19725158 19725329 -102118527 + (CATG)n Simple_repeat Simple_repeat 3 176 0 3 735 352 378 0 22 chr11 19725285 19725469 -102118387 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 735 226 317 0 0 chr11 19725428 19725488 -102118368 + (CACG)n Simple_repeat Simple_repeat 4 63 0 3 735 244 254 0 60 chr11 19725489 19725556 -102118300 + RSINE1 SINE B4 1 63 -102 3 735 26 50 0 0 chr11 19725636 19725676 -102118180 + AT_rich Low_complexity Low_complexity 1 40 0 3 735 421 284 145 27 chr11 19725721 19725942 -102117914 - MLT1B LTR MaLR -6 384 138 3 735 223 175 0 34 chr11 19726317 19726376 -102117480 + CT-rich Low_complexity Low_complexity 5 61 0 3 735 297 204 17 52 chr11 19726376 19726467 -102117389 - PB1D10 SINE Alu -33 116 27 4 735 348 244 15 22 chr11 19727849 19727983 -102115873 + C-rich Low_complexity Low_complexity 6 138 0 4 735 631 0 11 45 chr11 19728777 19728865 -102114991 + (TTTTG)n Simple_repeat Simple_repeat 2 86 0 4 735 213 347 71 10 chr11 19729249 19729348 -102114508 + L2c LINE L2 3080 3184 -203 4 735 594 160 433 0 chr11 19731128 19731278 -102112578 - B3 SINE B2 0 216 2 4 735 492 280 62 9 chr11 19731281 19731430 -102112426 - ID_B1 SINE B4 -66 226 72 4 735 598 250 76 0 chr11 19731621 19731753 -102112103 - ID_B1 SINE B4 0 224 83 4 735 316 206 13 52 chr11 19731790 19731867 -102111989 - RSINE1 SINE B4 0 165 92 4 735 370 103 17 33 chr11 19732222 19732282 -102111574 - HAL1-3A_ME LINE L1 -825 2033 1975 4 735 442 289 10 100 chr11 19732328 19732528 -102111328 - B3A SINE B2 -16 182 1 4 735 1397 196 212 110 chr11 19732929 19733320 -102110536 - MT2A LTR ERVL -2 531 85 4 735 938 133 14 14 chr11 19733320 19733465 -102110391 + B1_Mus1 SINE Alu 2 146 -2 4 735 1397 196 212 110 chr11 19733465 19733555 -102110301 - MT2A LTR ERVL -449 84 1 4 735 230 288 122 35 chr11 19734234 19734349 -102109507 - MER20 DNA MER1_type -70 149 25 4 735 227 183 333 0 chr11 19734859 19734919 -102108937 + B1F SINE Alu 18 97 -52 4 735 606 51 0 0 chr11 19734937 19735015 -102108841 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 735 204 40 0 0 chr11 19736305 19736330 -102107526 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 4 735 275 284 81 0 chr11 19736508 19736582 -102107274 - Charlie24 DNA MER1_type 0 2450 2371 4 735 1244 134 16 0 chr11 19736611 19736798 -102107058 + B2_Mm2 SINE B2 5 194 -1 4 735 220 125 0 0 chr11 19736798 19736830 -102107026 + B3A SINE B2 31 62 -136 4 735 195 284 0 0 chr11 19737041 19737129 -102106727 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 735 226 353 8 8 chr11 19737155 19737275 -102106581 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 735 2473 60 77 21 chr11 19737299 19737356 -102106500 - RLTR10D LTR ERVK 0 359 309 4 735 2264 129 56 67 chr11 19737356 19737836 -102106020 - IAPLTR2_Mm LTR ERVK 0 475 1 4 735 2473 60 77 21 chr11 19737836 19738118 -102105738 - RLTR10D LTR ERVK -51 308 1 4 735 236 398 24 0 chr11 19738141 19738307 -102105549 + (CATG)n Simple_repeat Simple_repeat 3 172 0 4 735 534 223 16 32 chr11 19738334 19738470 -102105386 + Lx8 LINE L1 4767 4930 -1213 4 735 1174 58 0 0 chr11 19738487 19738624 -102105232 + B1_Mus2 SINE Alu 1 137 -10 4 735 306 0 0 0 chr11 19738624 19738658 -102105198 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 735 3690 264 98 68 chr11 19738692 19739664 -102104192 + Lx8 LINE L1 5128 6190 -1283 4 735 237 65 0 0 chr11 19739664 19739695 -102104161 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 4 735 3690 283 125 29 chr11 19739695 19740893 -102102963 + Lx8 LINE L1 6191 7473 0 4 735 399 179 0 54 chr11 19741279 19741377 -102102479 + G-rich Low_complexity Low_complexity 1 92 0 4 735 4204 34 0 0 chr11 19741377 19741852 -102102004 - MT2C_Mm LTR ERVL 0 475 1 4 735 399 179 0 54 chr11 19741852 19741901 -102101955 + G-rich Low_complexity Low_complexity 93 139 0 4 735 291 274 0 0 chr11 19743057 19743119 -102100737 + PB1D10 SINE Alu 43 104 -13 4 735 316 308 168 23 chr11 19743306 19743479 -102100377 + Kanga1b DNA Tc2 38 235 -544 4 735 782 289 73 15 chr11 19743485 19743759 -102100097 + B4A SINE B4 1 290 -2 4 735 229 234 47 0 chr11 19743808 19743872 -102099984 + Kanga1b DNA Tc2 405 471 -308 4 735 257 262 16 0 chr11 19743885 19743946 -102099910 + B1F2 SINE Alu 1 62 -87 4 735 268 263 52 9 chr11 19743965 19743983 -102099873 + L1MB7 LINE L1 6045 6062 -122 4 735 1437 201 91 37 chr11 19743983 19744334 -102099522 + ORR1D2 LTR MaLR 1 370 0 4 735 268 263 52 9 chr11 19744334 19744430 -102099426 + L1MB7 LINE L1 6063 6163 -21 4 735 1177 92 121 6 chr11 19744659 19744833 -102099023 - B2_Mm2 SINE B2 0 195 2 4 735 904 226 113 0 chr11 19745097 19745274 -102098582 + B3 SINE B2 14 210 -6 4 735 465 277 38 13 chr11 19745475 19745611 -102098245 - ID_B1 SINE B4 -1 223 85 4 735 439 221 26 80 chr11 19745785 19745898 -102097958 - PB1D10 SINE Alu -10 107 1 4 735 356 281 65 131 chr11 19745898 19745967 -102097889 - ID SINE ID -147 77 20 4 735 304 266 9 105 chr11 19746809 19746914 -102096942 - B4A SINE B4 -197 95 1 4 735 412 306 27 0 chr11 19747175 19747286 -102096570 + B3A SINE B2 2 115 -83 4 735 438 69 0 0 chr11 19747406 19747464 -102096392 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 4 735 490 299 42 37 chr11 19747522 19747737 -102096119 - MER20 DNA MER1_type 0 219 4 4 735 2161 139 46 16 chr11 19747762 19748024 -102095832 - ORR1C2 LTR MaLR 0 384 119 4 735 3981 144 61 6 chr11 19748024 19748680 -102095176 + RLTR17 LTR ERVK 1 692 0 4 735 2161 139 46 16 chr11 19748680 19748790 -102095066 - ORR1C2 LTR MaLR -266 118 1 4 735 517 245 27 40 chr11 19748936 19749085 -102094771 + B1F SINE Alu 3 149 0 4 735 243 0 0 0 chr11 19749889 19749916 -102093940 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 735 2289 143 156 4 chr11 19750076 19750289 -102093567 + RLTR11A2 LTR ERVK 1 257 -270 4 735 414 0 0 0 chr11 19750289 19750335 -102093521 + (GGGGA)n Simple_repeat Simple_repeat 3 48 0 4 735 2289 143 156 4 chr11 19750335 19750577 -102093279 + RLTR11A2 LTR ERVK 258 524 -3 4 735 247 328 100 15 chr11 19750670 19750800 -102093056 + ORR1E LTR MaLR 6 146 -213 4 735 414 236 17 68 chr11 19751257 19751375 -102092481 - PB1D10 SINE Alu -1 116 5 4 735 323 88 0 155 chr11 19751383 19751557 -102092299 + (CACCT)n Simple_repeat Simple_repeat 1 147 0 4 735 711 147 44 44 chr11 19751602 19751737 -102092119 - B1_Mur3 SINE Alu -13 136 2 4 735 360 0 0 0 chr11 19751737 19751777 -102092079 + (TTG)n Simple_repeat Simple_repeat 2 41 0 4 735 700 170 192 7 chr11 19751826 19752096 -102091760 - Lx9 LINE L1 0 7644 7325 4 735 330 26 0 0 chr11 19753051 19753090 -102090766 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 4 735 557 235 0 10 chr11 19753090 19753184 -102090672 + PB1D10 SINE Alu 19 112 -5 4 735 200 263 0 0 chr11 19753184 19753222 -102090634 + polypurine Low_complexity Low_complexity 3 40 0 4 735 496 226 11 11 chr11 19753822 19753916 -102089940 + PB1D7 SINE Alu 5 98 -22 4 735 396 0 0 0 chr11 19754108 19754152 -102089704 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 735 242 336 94 8 chr11 19754218 19754335 -102089521 - MamRep605 Unknown Unknown -270 606 480 4 735 310 157 129 0 chr11 19754679 19754749 -102089107 - PB1D10 SINE Alu -11 106 28 4 735 568 231 46 59 chr11 19754739 19754891 -102088965 - ID_B1 SINE B4 -7 217 68 4 735 2644 144 101 0 chr11 19755144 19755610 -102088246 - RLTR11A LTR ERVK -1 527 15 4 735 310 304 173 60 chr11 19755704 19755837 -102088019 - MLT1J LTR MaLR -295 217 70 4 735 395 279 0 28 chr11 19755864 19755971 -102087885 + PB1D10 SINE Alu 2 105 -12 4 735 223 338 0 49 chr11 19756169 19756250 -102087606 + PB1D10 SINE Alu 40 116 -1 4 735 234 297 13 39 chr11 19756242 19756319 -102087537 + ID2 SINE ID 8 82 -1 4 735 2212 115 25 71 chr11 19756473 19756867 -102086989 - ORR1B1 LTR MaLR 0 394 24 4 735 405 275 37 37 chr11 19757033 19757072 -102086784 + B4 SINE B4 44 166 -126 4 735 499 188 113 57 chr11 19757072 19757153 -102086703 + B1_Mur1 SINE Alu 1 81 -68 4 735 3099 34 39 13 chr11 19757153 19757538 -102086318 + MTA_Mm LTR MaLR 1 395 -1 4 735 405 275 37 37 chr11 19757538 19757553 -102086303 + B4 SINE B4 167 179 -113 4 735 499 188 113 57 chr11 19757553 19757597 -102086259 + B1_Mur1 SINE Alu 82 149 0 4 735 22 0 0 0 chr11 19757621 19757643 -102086213 + AT_rich Low_complexity Low_complexity 1 22 0 4 735 751 182 22 0 chr11 19757649 19757786 -102086070 + B1_Mur4 SINE Alu 2 141 -9 4 735 402 21 0 0 chr11 19757911 19757958 -102085898 + (TTG)n Simple_repeat Simple_repeat 1 47 0 4 735 324 70 0 0 chr11 19758018 19758061 -102085795 + (TCC)n Simple_repeat Simple_repeat 3 45 0 4 735 279 200 169 0 chr11 19758098 19758163 -102085693 - ID4_ SINE ID -7 76 1 4 735 293 235 93 12 chr11 19759060 19759146 -102084710 + Lx8 LINE L1 7232 7324 -149 4 735 510 309 33 7 chr11 19759156 19759309 -102084547 + RSINE1 SINE B4 8 164 -1 4 735 1347 44 0 0 chr11 19759352 19759512 -102084344 + B2_Mm1t SINE B2 1 160 -33 4 735 393 22 0 0 chr11 19759512 19759558 -102084298 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 735 230 250 0 45 chr11 19759661 19759728 -102084128 + Lx8 LINE L1 7403 7466 -7 4 735 217 254 95 0 chr11 19759770 19759833 -102084023 + ID4 SINE ID 4 72 -11 4 735 201 197 42 0 chr11 19759839 19759910 -102083946 + G-rich Low_complexity Low_complexity 5 78 0 4 735 441 255 21 0 chr11 19760272 19760366 -102083490 + PB1D10 SINE Alu 17 112 -5 4 735 21 0 0 0 chr11 19760366 19760387 -102083469 + AT_rich Low_complexity Low_complexity 1 21 0 4 735 206 287 115 21 chr11 19760488 19760584 -102083272 - MIRm SINE MIR -2 274 170 4 735 504 297 47 0 chr11 19760614 19760742 -102083114 + B1F1 SINE Alu 9 142 -7 4 735 1309 64 58 6 chr11 19760829 19761001 -102082855 - B2_Mm2 SINE B2 -14 181 1 4 735 230 176 118 0 chr11 19761006 19761057 -102082799 - MTE2b LTR MaLR -216 163 107 4 735 407 165 101 0 chr11 19761577 19761656 -102082200 - MTE2b LTR MaLR -292 87 1 4 735 429 324 204 32 chr11 19761780 19762153 -102081703 + MLT1K LTR MaLR 131 567 -28 4 735 192 362 62 0 chr11 19762164 19762244 -102081612 + MIR SINE MIR 21 105 -157 4 735 416 287 86 29 chr11 19762246 19762386 -102081470 + ID_B1 SINE B4 51 198 -26 4 735 245 235 0 0 chr11 19762393 19762444 -102081412 + ID_B1 SINE B4 148 198 -26 4 735 233 250 16 16 chr11 19762417 19762478 -102081378 + B1_Mur1 SINE Alu 65 125 -24 4 735 375 213 27 0 chr11 19762451 19762526 -102081330 + ID_B1 SINE B4 148 224 0 4 735 1126 237 16 53 chr11 19763095 19763398 -102080458 - B4 SINE B4 0 292 1 4 735 2381 121 79 11 chr11 19763724 19764092 -102079764 - ORR1B1 LTR MaLR 0 394 2 4 735 196 235 118 0 chr11 19764164 19764232 -102079624 + MIR SINE MIR 68 143 -65 4 735 307 256 65 22 chr11 19764375 19764467 -102079389 + B1F SINE Alu 43 138 -11 4 735 539 258 64 8 chr11 19764887 19765012 -102078844 + RSINE1 SINE B4 14 145 -20 5 735 441 0 0 0 chr11 19765015 19765064 -102078792 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 735 738 224 38 13 chr11 19765064 19765222 -102078634 + B3 SINE B2 49 210 -6 5 735 186 43 0 0 chr11 19765300 19765323 -102078533 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 735 217 310 33 33 chr11 19765338 19765428 -102078428 + ID_B1 SINE B4 81 170 -54 5 735 553 161 254 0 chr11 19765573 19765691 -102078165 + B1_Mus1 SINE Alu 1 148 0 5 735 381 206 28 0 chr11 19765699 19765806 -102078050 + GA-rich Low_complexity Low_complexity 1 110 0 5 735 351 0 0 0 chr11 19766753 19766792 -102077064 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 5 735 2000 150 52 3 chr11 19767124 19767451 -102076405 + ORR1B1 LTR MaLR 52 394 0 5 735 979 193 41 0 chr11 19767508 19767679 -102076177 + MTD LTR MaLR 1 178 -241 5 735 654 254 33 62 chr11 19767681 19767891 -102075965 - ID_B1 SINE B4 -19 205 2 5 735 24 0 0 0 chr11 19767943 19767967 -102075889 + AT_rich Low_complexity Low_complexity 1 24 0 5 735 967 160 142 11 chr11 19768060 19768250 -102075606 - B3 SINE B2 0 216 2 5 735 22 0 0 0 chr11 19768634 19768656 -102075200 + AT_rich Low_complexity Low_complexity 1 22 0 5 735 210 135 0 26 chr11 19768731 19768769 -102075087 - PB1D7 SINE Alu -1 119 83 5 735 665 269 46 112 chr11 19768785 19769236 -102074620 + RMER15 LTR ERVL 26 560 -15 5 735 426 211 104 10 chr11 19769246 19769342 -102074514 - B1F SINE Alu -34 115 11 5 735 227 214 18 18 chr11 19769480 19769537 -102074319 + PB1D10 SINE Alu 61 117 0 5 735 485 235 10 39 chr11 19769552 19769654 -102074202 + RSINE1 SINE B4 7 105 -60 5 735 387 0 0 0 chr11 19769668 19769711 -102074145 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 735 549 236 125 0 chr11 19770327 19770471 -102073385 + RSINE1 SINE B4 2 163 -2 5 735 588 282 12 41 chr11 19770531 19770701 -102073155 + RSINE1 SINE B4 1 165 0 5 735 327 104 0 0 chr11 19770724 19770772 -102073084 + (ATGGTG)n Simple_repeat Simple_repeat 3 50 0 5 735 311 136 17 0 chr11 19770979 19771038 -102072818 + CT-rich Low_complexity Low_complexity 1 60 0 5 735 569 254 67 0 chr11 19771040 19771174 -102072682 - B1F1 SINE Alu -2 147 5 5 735 1387 173 0 0 chr11 19771242 19771456 -102072400 + B3 SINE B2 2 215 -1 5 735 291 331 78 42 chr11 19771839 19772006 -102071850 + LTR16C LTR ERVL 87 259 -230 5 735 491 222 148 0 chr11 19772321 19772429 -102071427 + B1F SINE Alu 1 124 -25 5 735 494 267 52 0 chr11 19772711 19772846 -102071010 + B1F1 SINE Alu 2 143 -6 5 735 634 212 8 0 chr11 19772730 19772848 -102071008 + ID_B1 SINE B4 102 220 -4 5 735 505 250 184 18 chr11 19772848 19773011 -102070845 + B4A SINE B4 6 195 -97 5 735 430 198 31 0 chr11 19773020 19773182 -102070674 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 735 322 298 0 77 chr11 19773695 19773722 -102070134 + B4 SINE B4 66 85 -207 5 735 394 259 80 36 chr11 19773722 19773834 -102070022 + PB1D9 SINE Alu 1 117 0 5 735 320 292 96 44 chr11 19774503 19774525 -102069331 - ID_B1 SINE B4 0 224 82 5 735 414 297 0 26 chr11 19774525 19774639 -102069217 - B1F SINE Alu -38 111 1 5 735 233 195 0 0 chr11 19774678 19774719 -102069137 - B1F1 SINE Alu -97 52 12 5 735 277 85 41 41 chr11 19774711 19774760 -102069096 + B1_Mus1 SINE Alu 12 60 -88 5 735 289 158 112 56 chr11 19774816 19774923 -102068933 + RLTR25B LTR ERVK 397 509 -519 5 735 826 57 0 0 chr11 19774860 19774966 -102068890 + B1_Mus2 SINE Alu 42 147 0 5 735 186 133 0 0 chr11 19774966 19774996 -102068860 + (A)n Simple_repeat Simple_repeat 1 30 0 5 735 266 327 59 65 chr11 19775276 19775446 -102068410 + LTR16E2 LTR ERVL 209 377 -191 5 735 1105 249 116 30 chr11 19775654 19775990 -102067866 + ORR1D2 LTR MaLR 1 365 -5 5 735 467 175 21 21 chr11 19776332 19776472 -102067384 + (CATA)n Simple_repeat Simple_repeat 1 140 0 5 735 206 163 0 39 chr11 19776504 19776555 -102067301 + (CATA)n Simple_repeat Simple_repeat 3 51 0 5 735 297 321 0 0 chr11 19776559 19776643 -102067213 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 735 485 192 19 26 chr11 19776663 19776818 -102067038 + (CATA)n Simple_repeat Simple_repeat 2 155 0 5 735 322 340 29 43 chr11 19776818 19777027 -102066829 + L1ME1 LINE L1 5938 6143 -36 5 735 442 298 115 10 chr11 19777027 19777227 -102066629 + MIRb SINE MIR 25 245 -23 5 735 441 275 37 0 chr11 19777942 19778051 -102065805 + PB1D7 SINE Alu 7 119 -1 5 735 231 240 143 71 chr11 19778370 19778482 -102065374 - PB1D7 SINE Alu 0 120 1 5 735 2087 161 19 34 chr11 19778667 19779046 -102064810 + RLTR14 LTR ERV1 1 373 -9 5 735 5205 137 65 44 chr11 19779046 19779917 -102063939 + RMER19B LTR ERVK 1 890 -12 5 735 1987 94 36 0 chr11 19780002 19780278 -102063578 + ORR1A3 LTR MaLR 1 286 -41 5 735 318 128 0 0 chr11 19780615 19780662 -102063194 + ORR1A3 LTR MaLR 272 318 -8 5 735 11007 125 62 38 chr11 19780666 19782267 -102061589 + ORR1A3-int LTR MaLR 1 1684 -279 5 735 1202 48 7 0 chr11 19782267 19782413 -102061443 + B1_Mus2 SINE Alu 1 147 0 5 735 11007 125 62 38 chr11 19782413 19782728 -102061128 + ORR1A3-int LTR MaLR 1685 1963 0 5 735 2401 105 9 0 chr11 19782728 19783051 -102060805 + ORR1A3 LTR MaLR 1 326 0 5 735 1506 85 4 17 chr11 19783053 19783333 -102060523 + ORR1A2 LTR MaLR 77 345 -1 5 735 1151 272 37 35 chr11 19783381 19783758 -102060098 + MTE2b LTR MaLR 1 378 -1 5 735 599 151 19 19 chr11 19783913 19784021 -102059835 - B1_Mur4 SINE Alu 0 150 43 5 735 270 167 37 0 chr11 19784067 19784121 -102059735 - B1_Mus1 SINE Alu -92 56 1 5 735 248 232 70 28 chr11 19784121 19784138 -102059718 - B4 SINE B4 -152 140 67 5 735 1432 241 68 6 chr11 19785267 19785593 -102058263 + ORR1D2 LTR MaLR 25 370 0 5 735 2660 167 54 27 chr11 19785723 19785855 -102058001 - RLTR19 LTR ERVK -1 498 368 5 735 3203 41 28 0 chr11 19785855 19786244 -102057612 + MTB LTR MaLR 1 400 0 5 735 2660 167 54 27 chr11 19786244 19786287 -102057569 - RLTR19 LTR ERVK -132 367 319 5 735 396 59 0 0 chr11 19786287 19786338 -102057518 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 735 2660 167 54 27 chr11 19786338 19786646 -102057210 - RLTR19 LTR ERVK -181 318 3 5 735 1613 167 101 75 chr11 19786674 19787062 -102056794 - RMER10B LTR ERVL 0 398 1 5 735 22 0 0 0 chr11 19787197 19787219 -102056637 + AT_rich Low_complexity Low_complexity 1 22 0 5 735 469 269 105 23 chr11 19787281 19787414 -102056442 + ID_B1 SINE B4 81 224 0 5 735 764 253 56 22 chr11 19787427 19787605 -102056251 + ID_B1 SINE B4 7 190 -34 5 735 217 216 0 0 chr11 19787598 19787635 -102056221 - B1F SINE Alu -100 49 13 5 735 334 346 134 0 chr11 19787649 19787776 -102056080 + ID_B1 SINE B4 81 224 0 5 735 237 233 66 40 chr11 19787858 19787934 -102055922 - B4 SINE B4 -8 284 207 5 735 447 19 0 0 chr11 19787936 19787988 -102055868 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 735 853 254 25 113 chr11 19788012 19788251 -102055605 - MTD LTR MaLR -16 403 210 5 735 872 168 0 0 chr11 19788251 19788388 -102055468 - B1_Mur4 SINE Alu -13 137 1 5 735 853 292 25 113 chr11 19788388 19788603 -102055253 - MTD LTR MaLR -210 209 2 5 735 392 307 101 51 chr11 19788603 19788748 -102055108 - B4 SINE B4 -138 154 2 5 735 393 75 0 0 chr11 19788773 19788826 -102055030 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 735 930 146 75 12 chr11 19788827 19789000 -102054856 - B2_Mm2 SINE B2 -10 185 2 5 735 309 293 37 0 chr11 19789085 19789167 -102054689 - B1F2 SINE Alu -56 93 9 5 735 225 257 55 41 chr11 19789102 19789175 -102054681 - ID_B1 SINE B4 -70 154 81 5 735 298 147 20 40 chr11 19789182 19789281 -102054575 + CT-rich Low_complexity Low_complexity 2 98 0 5 735 413 218 161 0 chr11 19789282 19789369 -102054487 - ID_B1 SINE B4 -7 217 117 5 735 638 268 6 65 chr11 19789405 19789573 -102054283 + RSINE1 SINE B4 8 165 0 5 735 405 185 236 18 chr11 19789755 19789865 -102053991 - Lx8 LINE L1 -329 7144 7011 5 735 396 0 0 0 chr11 19789872 19789916 -102053940 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 735 699 259 14 0 chr11 19789921 19790068 -102053788 - B3A SINE B2 -18 180 32 5 735 329 169 182 58 chr11 19790078 19790220 -102053636 - B1F SINE Alu 0 149 1 5 735 279 79 0 0 chr11 19790383 19790421 -102053435 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 735 425 156 126 53 chr11 19790421 19790509 -102053347 - PB1D10 SINE Alu -17 100 5 5 735 660 111 0 0 chr11 19790560 19790668 -102053188 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 735 1486 158 58 42 chr11 19790777 19791088 -102052768 - Lx4B LINE L1 0 7058 6743 5 735 218 306 129 0 chr11 19791490 19791575 -102052281 + B1F SINE Alu 33 128 -21 5 91 463 284 31 16 chr11 19791802 19791931 -102051925 + B1F SINE Alu 11 141 -8 5 736 272 274 100 36 chr11 19792047 19792076 -102051780 - MT2B2 LTR ERVL -299 285 170 5 736 409 212 175 0 chr11 19792076 19792156 -102051700 - B1F1 SINE Alu -50 99 6 5 736 324 270 33 33 chr11 19792351 19792443 -102051413 - B1F SINE Alu -44 105 14 5 736 248 340 18 36 chr11 19792358 19792468 -102051388 - ID_B1 SINE B4 -48 176 69 5 736 445 246 0 50 chr11 19792621 19792741 -102051115 - PB1D10 SINE Alu -2 115 2 5 736 1298 74 34 0 chr11 19792753 19792928 -102050928 - B2_Mm2 SINE B2 -11 184 4 5 736 291 290 0 0 chr11 19792928 19793028 -102050828 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 736 824 241 92 0 chr11 19793039 19793213 -102050643 - B3 SINE B2 -25 191 2 5 736 2143 176 165 17 chr11 19793355 19793833 -102050023 - RMER15 LTR ERVL 0 575 27 5 736 230 159 0 64 chr11 19793868 19793915 -102049941 - RMER15 LTR ERVL -503 72 29 5 736 222 62 0 0 chr11 19793929 19793961 -102049895 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 5 736 1112 95 0 7 chr11 19793961 19794110 -102049746 - B1_Mus1 SINE Alu 0 148 1 5 736 234 214 0 0 chr11 19794111 19794153 -102049703 - RMER15 LTR ERVL -533 42 1 5 736 304 228 206 0 chr11 19794533 19794625 -102049231 + PB1D10 SINE Alu 3 113 -4 6 736 1171 214 118 58 chr11 19795040 19795387 -102048469 - RMER13A LTR ERVK -421 439 72 6 736 573 55 0 0 chr11 19795393 19795466 -102048390 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 6 736 225 0 0 0 chr11 19795468 19795493 -102048363 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 736 1198 49 7 0 chr11 19795496 19795640 -102048216 - B1_Mus2 SINE Alu 0 147 3 6 736 859 222 39 10 chr11 19795915 19796120 -102047736 - B3 SINE B2 0 216 6 6 736 4185 172 178 29 chr11 19796151 19796796 -102047060 - Lx9 LINE L1 -1 7643 6837 6 736 1211 48 0 26 chr11 19796796 19796947 -102046909 - B1_Mus2 SINE Alu 0 147 1 6 736 4185 172 178 29 chr11 19796947 19797336 -102046520 - Lx9 LINE L1 -808 6836 6457 6 736 570 340 29 0 chr11 19797467 19797676 -102046180 - ID_B1 SINE B4 -8 216 2 6 736 252 222 53 53 chr11 19797734 19797810 -102046046 - B1_Mur3 SINE Alu 0 149 74 6 736 256 286 66 0 chr11 19797745 19797836 -102046020 - ID_B1 SINE B4 -7 217 121 6 736 1364 77 11 16 chr11 19798318 19798504 -102045352 - B2_Mm1t SINE B2 -7 186 2 6 736 2735 55 3 0 chr11 19798716 19799042 -102044814 + ORR1A2 LTR MaLR 1 327 0 6 736 208 163 0 23 chr11 19799119 19799163 -102044693 + GA-rich Low_complexity Low_complexity 2 44 0 6 736 198 333 119 0 chr11 19799224 19799308 -102044548 + MIR SINE MIR 36 129 -133 6 736 449 238 50 0 chr11 19799312 19799413 -102044443 - B1F2 SINE Alu -1 148 43 6 736 324 0 0 0 chr11 19799447 19799483 -102044373 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 736 285 310 0 0 chr11 19799531 19799602 -102044254 - ID4_ SINE ID -10 73 3 6 736 538 220 72 20 chr11 19799604 19799757 -102044099 + MIR SINE MIR 101 261 -1 6 736 456 72 0 0 chr11 19800121 19800190 -102043666 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 736 262 211 0 19 chr11 19800312 19800365 -102043491 - B1F SINE Alu -1 148 97 6 736 360 0 0 0 chr11 19800577 19800617 -102043239 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 736 202 265 20 0 chr11 19800687 19800736 -102043120 + GA-rich Low_complexity Low_complexity 1 50 0 6 736 529 261 195 22 chr11 19800739 19800970 -102042886 - B4A SINE B4 -20 272 2 6 736 989 282 21 4 chr11 19800970 19801198 -102042658 - B4A SINE B4 -60 232 1 6 736 354 194 178 12 chr11 19801435 19801536 -102042320 + B1F SINE Alu 12 128 -21 6 736 464 295 26 85 chr11 19801982 19802171 -102041685 + ID_B1 SINE B4 5 182 -42 6 736 1081 75 132 0 chr11 19802175 19802334 -102041522 + B2_Mm2 SINE B2 1 180 -15 6 736 186 43 0 0 chr11 19802334 19802357 -102041499 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 736 821 201 174 0 chr11 19802379 19802563 -102041293 + B3 SINE B2 1 216 0 6 736 27 0 0 0 chr11 19802614 19802641 -102041215 + AT_rich Low_complexity Low_complexity 1 27 0 6 736 195 42 0 0 chr11 19802647 19802671 -102041185 + (A)n Simple_repeat Simple_repeat 1 24 0 6 736 570 274 7 0 chr11 19802671 19802806 -102041050 - B1F2 SINE Alu -13 136 1 6 736 559 302 8 0 chr11 19802807 19802933 -102040923 - B1F SINE Alu -13 136 10 6 736 259 295 0 0 chr11 19802882 19802943 -102040913 - B4A SINE B4 -147 145 85 6 736 1150 292 17 31 chr11 19803182 19803475 -102040381 + MTE2a LTR MaLR 46 334 -45 6 736 418 241 0 12 chr11 19803467 19803551 -102040305 - ID_B1 SINE B4 -58 166 84 6 736 911 154 0 7 chr11 19803626 19803770 -102040086 + B1_Mur2 SINE Alu 2 144 -5 6 736 24 0 0 0 chr11 19803770 19803794 -102040062 + AT_rich Low_complexity Low_complexity 1 24 0 6 736 29 0 0 0 chr11 19803854 19803883 -102039973 + AT_rich Low_complexity Low_complexity 1 29 0 6 736 197 269 100 55 chr11 19803887 19803997 -102039859 + L2 LINE L2 2806 2920 -499 6 736 1024 272 50 92 chr11 19804218 19804695 -102039161 + RMER4A LTR ERVK 1 457 -9 6 736 238 386 71 7 chr11 19804755 19804896 -102038960 + MIR SINE MIR 11 160 -102 6 736 658 252 7 0 chr11 19804926 19805069 -102038787 + ID_B1 SINE B4 81 224 0 6 736 258 207 241 0 chr11 19805077 19805135 -102038721 + PB1D7 SINE Alu 8 79 -41 6 736 228 174 0 98 chr11 19805091 19805142 -102038714 + ID_B1 SINE B4 117 162 -62 6 736 326 156 31 0 chr11 19805184 19805248 -102038608 + B1F SINE Alu 84 149 0 6 736 961 59 0 0 chr11 19805276 19805395 -102038461 + B1_Mm SINE Alu 21 139 -8 6 736 212 0 36 0 chr11 19805395 19805423 -102038433 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 736 286 291 161 0 chr11 19805426 19805555 -102038301 + MER58A DNA MER1_type 11 163 -61 6 736 424 303 27 9 chr11 19805609 19805719 -102038137 + PB1D10 SINE Alu 4 115 -2 6 736 203 0 37 0 chr11 19806146 19806173 -102037683 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 736 387 0 0 0 chr11 19806406 19806449 -102037407 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 6 736 372 292 0 53 chr11 19806460 19806554 -102037302 + B1F1 SINE Alu 35 123 -26 6 736 907 141 0 34 chr11 19806623 19806770 -102037086 + B1_Mur4 SINE Alu 4 145 -5 6 736 469 242 6 6 chr11 19806771 19806937 -102036919 + GA-rich Low_complexity Low_complexity 2 167 0 6 736 241 160 0 138 chr11 19807087 19807145 -102036711 - ID_B1 SINE B4 -1 223 174 6 736 234 197 15 103 chr11 19807090 19807158 -102036698 - PB1 SINE Alu -3 124 63 6 736 200 59 29 0 chr11 19807536 19807570 -102036286 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 736 856 74 0 8 chr11 19807570 19807681 -102036175 - B1_Mm SINE Alu -10 137 28 6 736 191 36 36 0 chr11 19807682 19807710 -102036146 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 736 1094 97 0 7 chr11 19807713 19807859 -102035997 - B1_Mus2 SINE Alu -2 145 1 6 736 1157 89 53 0 chr11 19809161 19809178 -102034678 - B2_Mm2 SINE B2 -17 178 159 6 736 423 0 0 0 chr11 19809178 19809225 -102034631 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 736 1157 89 53 0 chr11 19809225 19809376 -102034480 - B2_Mm2 SINE B2 -37 158 2 6 736 1326 47 59 0 chr11 19809743 19809913 -102033943 + B2_Mm2 SINE B2 2 181 -14 6 736 1260 27 7 0 chr11 19809918 19810064 -102033792 - B1_Mm SINE Alu 0 147 1 6 736 615 197 102 0 chr11 19810136 19810263 -102033593 + B1F SINE Alu 9 148 -1 6 736 665 180 195 11 chr11 19810425 19810599 -102033257 + B3 SINE B2 1 206 -10 6 736 1164 114 53 26 chr11 19810705 19810894 -102032962 - B2_Mm2 SINE B2 0 195 2 6 736 305 281 158 0 chr11 19810963 19810984 -102032872 - B1F2 SINE Alu -1 148 18 6 736 372 283 76 0 chr11 19810984 19811076 -102032780 - ID_B1 SINE B4 -27 197 99 6 736 338 262 11 35 chr11 19811109 19811196 -102032660 - PB1D10 SINE Alu -20 97 13 6 736 761 208 24 86 chr11 19811238 19811364 -102032492 + B3A SINE B2 1 118 -80 6 736 2272 150 27 5 chr11 19811364 19811740 -102032116 + ORR1C2 LTR MaLR 1 384 0 6 736 761 208 24 86 chr11 19811740 19811823 -102032033 + B3A SINE B2 119 197 -1 6 736 272 135 0 0 chr11 19812058 19812095 -102031761 + B1F SINE Alu 20 56 -93 6 736 272 329 0 12 chr11 19812087 19812167 -102031689 - B1_Mus1 SINE Alu -61 87 9 6 736 351 281 17 34 chr11 19812175 19812293 -102031563 - PB1D7 SINE Alu -1 119 4 6 736 273 226 44 67 chr11 19812461 19812551 -102031305 + MIRc SINE MIR 61 148 -120 6 736 279 0 0 0 chr11 19812567 19812598 -102031258 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 736 1039 53 8 0 chr11 19812598 19812731 -102031125 - B1_Mus1 SINE Alu -9 139 6 6 736 195 129 0 0 chr11 19812734 19812765 -102031091 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 736 1017 201 60 5 chr11 19812771 19812971 -102030885 - B3 SINE B2 -2 214 4 6 736 256 310 115 35 chr11 19813084 19813258 -102030598 + B2_Mm2 SINE B2 2 189 -6 6 736 493 179 0 45 chr11 19813351 19813462 -102030394 - Lx6 LINE L1 -1384 6076 5971 6 736 544 260 16 24 chr11 19813468 19813594 -102030262 - ID_B1 SINE B4 -12 212 88 6 736 427 346 122 16 chr11 19813625 19813787 -102030069 + MLT1H LTR MaLR 12 186 -363 6 736 645 38 0 0 chr11 19813787 19813867 -102029989 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 6 736 427 346 122 16 chr11 19813867 19814007 -102029849 + MLT1H LTR MaLR 187 345 -204 6 736 221 291 116 34 chr11 19814209 19814355 -102029501 + B4A SINE B4 10 167 -125 6 736 292 239 63 32 chr11 19814289 19814384 -102029472 + PB1D7 SINE Alu 18 115 -5 6 736 756 169 21 29 chr11 19814386 19814526 -102029330 + B1_Mur1 SINE Alu 2 140 -9 6 736 351 0 0 0 chr11 19814528 19814567 -102029289 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 736 627 256 0 0 chr11 19814952 19815081 -102028775 + B1_Mur1 SINE Alu 10 138 -11 6 736 3605 35 28 14 chr11 19815132 19815562 -102028294 - RLTR10C LTR ERVK 0 436 1 6 736 255 152 0 0 chr11 19815872 19815918 -102027938 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 736 238 260 12 38 chr11 19815923 19816003 -102027853 - MER102c DNA MER1_type -177 154 77 6 736 621 190 39 0 chr11 19816007 19816128 -102027728 + B1_Mus2 SINE Alu 3 146 -3 6 736 576 217 73 86 chr11 19816237 19816370 -102027486 + B1_Mur1 SINE Alu 1 137 -12 6 736 224 59 29 0 chr11 19816370 19816404 -102027452 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 6 736 576 217 73 86 chr11 19816404 19816421 -102027435 + B1_Mur1 SINE Alu 138 149 0 6 736 1289 14 0 7 chr11 19816515 19816663 -102027193 - B1_Mm SINE Alu 0 147 1 6 736 1454 69 11 0 chr11 19816666 19816854 -102027002 - B2_Mm1t SINE B2 -3 190 1 6 736 242 362 99 22 chr11 19816908 19817089 -102026767 - MLT1K LTR MaLR -11 584 390 7 736 238 338 99 77 chr11 19817835 19817990 -102025866 - MER102b DNA MER1_type -112 229 72 7 736 519 17 0 0 chr11 19817990 19818050 -102025806 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 7 736 238 338 99 77 chr11 19818050 19818115 -102025741 - MER102b DNA MER1_type -270 71 6 7 736 384 213 95 0 chr11 19819075 19819165 -102024691 + B1_Mus2 SINE Alu 9 109 -40 7 736 287 169 22 98 chr11 19819414 19819506 -102024350 - ID SINE ID -137 87 3 7 736 342 202 171 37 chr11 19820750 19820832 -102023024 - ID_B1 SINE B4 -4 220 128 7 736 187 31 62 0 chr11 19820869 19820901 -102022955 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 736 320 223 213 0 chr11 19820942 19821036 -102022820 - B1F SINE Alu 0 149 36 7 736 1222 54 0 0 chr11 19821123 19821270 -102022586 - B1_Mus2 SINE Alu 0 147 1 7 736 316 350 198 9 chr11 19821454 19821667 -102022189 - B4 SINE B4 -36 256 2 7 736 1018 214 14 19 chr11 19821697 19821911 -102021945 - B3 SINE B2 0 216 4 7 736 679 240 7 0 chr11 19821931 19822077 -102021779 - B1_Mur2 SINE Alu 0 149 3 7 736 286 100 16 16 chr11 19822101 19822162 -102021694 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 7 736 665 230 7 21 chr11 19822561 19822703 -102021153 - B1_Mur1 SINE Alu -9 140 1 7 736 443 254 17 17 chr11 19822737 19822857 -102020999 - B1F1 SINE Alu -4 145 26 7 736 450 206 284 0 chr11 19823253 19823394 -102020462 + B3 SINE B2 6 186 -30 7 736 666 171 0 0 chr11 19823422 19823545 -102020311 + GA-rich Low_complexity Low_complexity 2 124 0 7 736 885 19 0 0 chr11 19823546 19823649 -102020207 + (GGGAA)n Simple_repeat Simple_repeat 4 106 0 7 736 23 92 0 0 chr11 19824553 19824618 -102019238 + GC_rich Low_complexity Low_complexity 1 65 0 7 736 252 0 0 0 chr11 19825945 19825973 -102017883 + (T)n Simple_repeat Simple_repeat 1 28 0 7 736 236 215 36 48 chr11 19826366 19826449 -102017407 - ID4 SINE ID 0 83 2 7 736 439 229 42 97 chr11 19827069 19827091 -102016765 + MT2B LTR ERVL 73 111 -473 7 736 406 221 73 10 chr11 19827091 19827187 -102016669 + B1F SINE Alu 1 102 -47 7 736 1006 56 0 0 chr11 19827185 19827311 -102016545 + B1_Mus1 SINE Alu 23 148 0 7 736 439 229 42 97 chr11 19827187 19827266 -102016590 + MT2B LTR ERVL 112 257 -327 7 736 200 114 0 64 chr11 19827311 19827358 -102016498 + A-rich Low_complexity Low_complexity 4 47 0 7 736 562 235 46 17 chr11 19827463 19827606 -102016250 - B1F2 SINE Alu 0 150 6 7 736 237 264 172 38 chr11 19827648 19827798 -102016058 - MIR SINE MIR -105 171 1 7 736 294 95 0 0 chr11 19828176 19828218 -102015638 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 736 468 248 33 33 chr11 19828231 19828352 -102015504 - RSINE1 SINE B4 -43 122 2 7 736 609 259 7 35 chr11 19828366 19828510 -102015346 - ID_B1 SINE B4 0 224 85 7 736 723 48 144 0 chr11 19828537 19828641 -102015215 - PB1D9 SINE Alu -1 119 1 7 736 650 279 43 27 chr11 19828654 19828842 -102015014 - B3A SINE B2 0 198 8 7 736 431 265 28 73 chr11 19828843 19828995 -102014861 - B1F1 SINE Alu -6 141 1 7 736 322 253 21 75 chr11 19828995 19829078 -102014778 + RLTR25A LTR ERVK 495 572 -531 7 736 838 46 0 35 chr11 19829017 19829130 -102014726 + B1_Mus1 SINE Alu 39 147 -1 7 736 250 296 30 30 chr11 19829373 19829474 -102014382 - PB1 SINE Alu -17 110 10 7 736 200 188 0 0 chr11 19829968 19830000 -102013856 + C-rich Low_complexity Low_complexity 2 33 0 7 736 245 0 86 0 chr11 19830310 19830345 -102013511 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 7 736 605 124 0 20 chr11 19830346 19830445 -102013411 - B1_Mur3 SINE Alu -6 143 47 7 736 661 194 33 59 chr11 19830616 19830769 -102013087 - B1_Mur1 SINE Alu 0 149 1 7 736 201 74 0 0 chr11 19830982 19831009 -102012847 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7 736 237 83 0 0 chr11 19831310 19831346 -102012510 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 7 736 315 192 27 14 chr11 19831413 19831487 -102012369 - ID4_ SINE ID -8 75 1 7 736 189 0 0 0 chr11 19831517 19831538 -102012318 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 7 736 814 167 0 0 chr11 19831538 19831664 -102012192 - B1_Mur1 SINE Alu -13 136 11 7 736 465 242 74 22 chr11 19831683 19831818 -102012038 - B1F SINE Alu -7 142 1 7 736 279 0 0 0 chr11 19832475 19832506 -102011350 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 7 736 1234 84 0 29 chr11 19832508 19832680 -102011176 - B2_Mm2 SINE B2 -27 168 2 7 736 261 83 0 0 chr11 19832816 19832852 -102011004 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 736 192 289 78 13 chr11 19833041 19833118 -102010738 - L2a LINE L2 -25 3362 3281 7 736 22 0 0 0 chr11 19833579 19833601 -102010255 + AT_rich Low_complexity Low_complexity 1 22 0 7 736 1637 37 0 0 chr11 19833601 19833790 -102010066 - B2_Mm1a SINE B2 -3 190 2 7 736 407 261 17 25 chr11 19833790 19833908 -102009948 - PB1D7 SINE Alu -2 118 2 7 736 673 154 97 56 chr11 19833954 19834098 -102009758 - B1_Mur4 SINE Alu 0 150 1 7 736 1177 200 14 0 chr11 19834116 19834326 -102009530 - B3 SINE B2 -3 213 1 7 736 1722 21 0 0 chr11 19834471 19834663 -102009193 + B2_Mm1a SINE B2 1 192 -1 7 736 475 183 137 58 chr11 19834701 19834840 -102009016 - B1_Mur4 SINE Alu 0 150 1 7 736 276 229 49 0 chr11 19834900 19834961 -102008895 - ID4 SINE ID -17 66 3 7 736 723 214 0 0 chr11 19835444 19835570 -102008286 + B1_Mus2 SINE Alu 1 126 -21 7 736 195 42 0 0 chr11 19835578 19835602 -102008254 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 736 609 209 100 17 chr11 19836605 19836785 -102007071 - B3A SINE B2 -2 196 2 7 736 292 273 101 34 chr11 19836812 19836960 -102006896 - RSINE1 SINE B4 -6 159 2 7 736 329 271 84 54 chr11 19837003 19837206 -102006650 + Charlie23a DNA MER1_type 53 261 -78 7 736 24 0 0 0 chr11 19837238 19837262 -102006594 + GC_rich Low_complexity Low_complexity 1 24 0 7 736 492 18 0 0 chr11 19837505 19837562 -102006294 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 736 199 325 48 12 chr11 19837570 19837654 -102006202 + MIR SINE MIR 33 119 -89 7 736 579 281 70 5 chr11 19837724 19837910 -102005946 + B3 SINE B2 4 201 -15 7 736 630 228 65 51 chr11 19837938 19838155 -102005701 + ID_B1 SINE B4 3 222 -2 7 736 574 221 31 47 chr11 19838223 19838351 -102005505 + B1_Mur2 SINE Alu 23 148 -1 7 736 270 0 0 0 chr11 19838427 19838457 -102005399 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7 736 453 252 18 36 chr11 19839834 19839945 -102003911 - PB1D10 SINE Alu -3 114 6 7 736 255 320 38 30 chr11 19839987 19840119 -102003737 - B4A SINE B4 -146 146 14 7 736 382 298 8 81 chr11 19840160 19840284 -102003572 + ID_B1 SINE B4 78 192 -32 7 736 468 0 0 0 chr11 19840286 19840338 -102003518 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 736 783 158 23 0 chr11 19840642 19840775 -102003081 - B1_Mur4 SINE Alu -13 137 2 7 736 399 256 39 16 chr11 19840784 19840911 -102002945 - B1_Mus2 SINE Alu -3 144 15 7 736 516 240 130 30 chr11 19840950 19841134 -102002722 - ID_B1 SINE B4 -21 203 2 7 736 292 252 76 97 chr11 19842095 19842166 -102001690 - B4A SINE B4 -86 206 92 7 736 319 186 0 0 chr11 19842166 19842225 -102001631 - PB1D7 SINE Alu -60 60 2 7 736 292 252 76 97 chr11 19842225 19842240 -102001616 - B4A SINE B4 -86 91 65 7 736 274 244 293 34 chr11 19842324 19842532 -102001324 - B4A SINE B4 -30 262 1 7 736 403 270 36 0 chr11 19842807 19842918 -102000938 - PB1D9 SINE Alu -1 119 5 7 736 228 340 130 0 chr11 19842941 19843041 -102000815 - Lx8 LINE L1 -187 7286 7174 7 736 290 253 24 37 chr11 19843046 19843128 -102000728 - PB1D10 SINE Alu -8 109 29 7 736 1035 84 156 0 chr11 19843149 19843203 -102000653 - B2_Mm2 SINE B2 -2 193 134 7 736 534 16 0 0 chr11 19843203 19843266 -102000590 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 736 1035 84 156 0 chr11 19843266 19843378 -102000478 - B2_Mm2 SINE B2 -62 133 3 7 736 217 324 60 51 chr11 19843768 19843804 -102000052 + PB1D9 SINE Alu 1 118 -2 7 736 355 228 25 25 chr11 19843804 19843885 -101999971 + ID_B1 SINE B4 142 222 -2 7 736 887 202 9 55 chr11 19844437 19844657 -101999199 - B3 SINE B2 -5 211 2 7 736 187 348 0 0 chr11 19845309 19845355 -101998501 + MIRc SINE MIR 56 101 -167 7 736 240 208 24 122 chr11 19845682 19845764 -101998092 - PB1D10 SINE Alu -2 115 42 7 736 745 169 101 58 chr11 19846048 19846237 -101997619 - B3A SINE B2 0 198 2 7 736 216 0 0 0 chr11 19847056 19847080 -101996776 + (T)n Simple_repeat Simple_repeat 1 24 0 7 736 931 43 0 0 chr11 19847080 19847195 -101996661 - B1_Mus2 SINE Alu 0 147 33 7 736 225 242 180 50 chr11 19847285 19847385 -101996471 - B1F SINE Alu -1 148 36 7 736 188 362 50 0 chr11 19848302 19848382 -101995474 + L2b LINE L2 3023 3106 -269 7 736 309 291 13 0 chr11 19849265 19849344 -101994512 - BC1_Mm scRNA scRNA -60 92 13 7 736 334 216 10 49 chr11 19849370 19849470 -101994386 - PB1D10 SINE Alu -2 115 20 7 736 1634 164 38 44 chr11 19849470 19849847 -101994009 + RLTR11A LTR ERVK 1 439 -89 7 736 198 0 0 0 chr11 19852233 19852255 -101991601 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 7 736 567 286 112 20 chr11 19852731 19852927 -101990929 + ID_B1 SINE B4 3 216 -8 7 736 1225 48 0 7 chr11 19853532 19853680 -101990176 - B1_Mus2 SINE Alu 0 147 1 8 736 347 179 163 31 chr11 19853713 19853811 -101990045 - PB1D9 SINE Alu 0 120 10 8 736 231 265 200 29 chr11 19853735 19853840 -101990016 - ID_B1 SINE B4 -48 176 54 8 736 958 178 85 15 chr11 19853954 19854154 -101989702 - B3 SINE B2 -2 214 1 8 736 252 0 0 0 chr11 19854161 19854189 -101989667 + (T)n Simple_repeat Simple_repeat 1 28 0 8 736 339 267 138 0 chr11 19854944 19855060 -101988796 + RSINE1 SINE B4 3 134 -31 8 736 399 350 52 108 chr11 19855847 19856154 -101987702 - B4 SINE B4 0 292 3 8 736 661 162 25 33 chr11 19856518 19856639 -101987217 - PB1D9 SINE Alu 0 120 1 8 736 640 298 10 20 chr11 19856664 19856863 -101986993 - B3A SINE B2 0 198 2 8 736 336 24 0 0 chr11 19857033 19857074 -101986782 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 736 263 28 0 27 chr11 19857152 19857189 -101986667 + (TATG)n Simple_repeat Simple_repeat 2 37 0 8 736 306 344 42 0 chr11 19857420 19857516 -101986340 - MIR SINE MIR -145 117 18 8 736 3127 229 106 41 chr11 19858013 19858285 -101985571 + RLTR25A LTR ERVK 5 310 -793 8 736 484 109 287 0 chr11 19858285 19858386 -101985470 + B1_Mus1 SINE Alu 4 133 -15 8 736 3127 229 110 53 chr11 19858386 19859115 -101984741 + RLTR25A LTR ERVK 309 1028 0 8 736 643 222 8 0 chr11 19859208 19859325 -101984531 + ID_B1 SINE B4 74 191 -33 8 736 186 43 0 0 chr11 19859556 19859579 -101984277 + (TTGG)n Simple_repeat Simple_repeat 4 26 0 8 736 577 256 80 0 chr11 19860063 19860200 -101983656 - RSINE1 SINE B4 -13 152 5 8 736 189 0 0 0 chr11 19861518 19861539 -101982317 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 8 736 1166 64 0 0 chr11 19861539 19861680 -101982176 - B1_Mus1 SINE Alu -7 141 1 8 736 187 194 0 0 chr11 19862072 19862103 -101981753 + MIRc SINE MIR 132 162 -106 8 736 328 259 111 77 chr11 19862562 19862679 -101981177 + B1F1 SINE Alu 7 127 -22 8 736 270 56 0 0 chr11 19862940 19862976 -101980880 + (CTGTG)n Simple_repeat Simple_repeat 5 40 0 8 736 441 0 0 0 chr11 19863509 19863558 -101980298 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 736 393 22 0 0 chr11 19864237 19864283 -101979573 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 736 228 271 57 0 chr11 19864763 19864833 -101979023 + MER33 DNA MER1_type 133 206 -118 8 736 351 65 0 0 chr11 19865027 19865073 -101978783 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 736 190 318 33 54 chr11 19866749 19866841 -101977015 + MER5B DNA MER1_type 1 92 -97 8 736 206 32 32 0 chr11 19866852 19866883 -101976973 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 736 1345 154 0 23 chr11 19867340 19867559 -101976297 - URR1A DNA MER1_type -10 216 3 8 736 633 257 36 84 chr11 19867559 19867593 -101976263 + CYRA11_Mm Unknown Y-chromosome 400 421 -196 8 736 676 278 11 40 chr11 19867691 19867867 -101975989 + ID_B1 SINE B4 1 171 -53 8 736 1410 34 85 0 chr11 19868238 19868256 -101975600 - B2_Mm1a SINE B2 0 193 176 8 736 495 0 0 0 chr11 19868256 19868311 -101975545 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 8 736 1410 34 85 0 chr11 19868311 19868469 -101975387 - B2_Mm1a SINE B2 -18 175 3 8 736 760 261 82 16 chr11 19869082 19869265 -101974591 + B3 SINE B2 1 195 -21 8 736 338 173 0 0 chr11 19869300 19869352 -101974504 - HAL1-3A_ME LINE L1 -831 2027 1976 8 736 228 250 49 16 chr11 19869363 19869424 -101974432 - PB1D10 SINE Alu -52 65 3 8 736 493 263 29 22 chr11 19869424 19869507 -101974349 - ID SINE ID -138 86 3 8 736 314 230 89 151 chr11 19870941 19871000 -101972856 - MT2B LTR ERVL -146 438 279 8 736 349 252 126 36 chr11 19871000 19871111 -101972745 - RSINE1 SINE B4 -31 134 14 8 736 314 230 89 151 chr11 19871111 19871137 -101972719 - MT2B LTR ERVL -306 278 210 8 736 377 206 0 56 chr11 19871137 19871209 -101972647 - B1_Mus2 SINE Alu -71 76 9 8 736 314 230 89 151 chr11 19871209 19871223 -101972633 - MT2B LTR ERVL -146 209 162 8 736 297 286 156 25 chr11 19871223 19871345 -101972511 - B1F SINE Alu -1 148 11 8 736 312 94 0 0 chr11 19871465 19871518 -101972338 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 736 180 0 0 0 chr11 19871828 19871848 -101972008 + (T)n Simple_repeat Simple_repeat 1 20 0 8 736 881 125 22 7 chr11 19871851 19871988 -101971868 - B1_Mur1 SINE Alu -1 148 10 8 736 702 241 0 21 chr11 19872013 19872153 -101971703 - RSINE1 SINE B4 -28 137 1 8 736 475 170 191 26 chr11 19873924 19874039 -101969817 - B1_Mus1 SINE Alu -12 136 3 8 736 1463 64 37 0 chr11 19874685 19874872 -101968984 + B2_Mm2 SINE B2 1 194 -1 8 736 421 188 63 105 chr11 19874952 19875047 -101968809 - PB1D10 SINE Alu -57 92 2 8 736 237 250 10 102 chr11 19874964 19875062 -101968794 - MT2B2 LTR ERVL -340 244 156 8 736 548 244 146 0 chr11 19875375 19875539 -101968317 + B3 SINE B2 1 188 -28 8 736 709 140 9 9 chr11 19875522 19875637 -101968219 + B1_Mur4 SINE Alu 34 148 -2 8 736 1022 166 193 0 chr11 19875687 19875868 -101967988 + B3 SINE B2 1 216 0 8 736 500 207 539 19 chr11 19876084 19876321 -101967535 - ORR1D2 LTR MaLR 0 370 7 8 736 333 0 0 0 chr11 19876497 19876534 -101967322 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 736 846 207 0 0 chr11 19876539 19876689 -101967167 - B3A SINE B2 -48 150 1 8 736 356 279 54 73 chr11 19876943 19877148 -101966708 - B4A SINE B4 -7 285 85 8 736 567 108 0 61 chr11 19877171 19877270 -101966586 - B1_Mur4 SINE Alu -15 135 43 8 736 630 243 113 51 chr11 19877342 19877537 -101966319 - ID_B1 SINE B4 -17 207 1 8 736 587 239 85 6 chr11 19878690 19878867 -101964989 - ID_B1 SINE B4 -33 191 1 8 736 225 254 70 32 chr11 19878889 19878996 -101964860 - B1F SINE Alu -7 142 1 8 736 286 308 13 0 chr11 19879045 19879063 -101964793 + B4 SINE B4 67 85 -207 8 736 410 268 0 49 chr11 19879063 19879165 -101964691 + PB1D10 SINE Alu 1 97 -20 8 736 357 62 0 0 chr11 19879825 19879873 -101963983 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 736 21 0 0 0 chr11 19880904 19880925 -101962931 + AT_rich Low_complexity Low_complexity 1 21 0 8 736 562 263 0 26 chr11 19881363 19881480 -101962376 + PB1D10 SINE Alu 4 117 0 8 736 1354 82 60 0 chr11 19881483 19881666 -101962190 + B2_Mm2 SINE B2 2 195 0 8 736 1255 27 0 26 chr11 19881668 19881812 -101962044 + B1_Mm SINE Alu 1 141 -6 8 736 243 0 0 0 chr11 19881812 19881839 -101962017 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 736 495 154 13 0 chr11 19881852 19881930 -101961926 + B1_Mur1 SINE Alu 43 121 -28 8 736 226 164 18 18 chr11 19883325 19883381 -101960475 + CT-rich Low_complexity Low_complexity 4 59 0 8 736 378 0 0 0 chr11 19883782 19883824 -101960032 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 736 619 194 0 0 chr11 19883855 19883963 -101959893 + B3 SINE B2 15 122 -94 8 736 284 274 32 0 chr11 19884383 19884445 -101959411 + RSINE1 SINE B4 1 64 -101 8 736 300 259 198 5 chr11 19884587 19884740 -101959116 - L1MB1 LINE L1 -122 6067 5894 8 736 771 96 94 16 chr11 19884751 19884878 -101958978 - B1_Mus2 SINE Alu -6 141 5 8 736 306 254 184 21 chr11 19884901 19885103 -101958753 - L1MB1 LINE L1 -391 5900 5630 8 736 235 320 77 0 chr11 19885337 19885415 -101958441 + RSINE1 SINE B4 48 131 -34 8 736 447 240 21 10 chr11 19885609 19885706 -101958150 + B1_Mur1 SINE Alu 52 149 0 8 736 1388 60 16 21 chr11 19885714 19885903 -101957953 + B2_Mm2 SINE B2 3 190 -5 8 736 411 239 89 22 chr11 19885922 19886012 -101957844 + B3 SINE B2 35 130 -86 8 736 420 20 0 0 chr11 19886138 19886187 -101957669 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 736 226 132 0 36 chr11 19888531 19888586 -101955270 + T-rich Low_complexity Low_complexity 2 54 0 8 736 547 109 108 85 chr11 19889220 19889350 -101954506 - B1_Mur4 SINE Alu -15 135 3 8 736 742 67 19 9 chr11 19890173 19890279 -101953577 + B2_Mm2 SINE B2 23 129 -66 8 736 216 0 0 0 chr11 19890279 19890303 -101953553 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 8 736 1090 86 7 0 chr11 19890303 19890455 -101953401 - B2_Mm2 SINE B2 -40 155 3 8 736 1256 34 7 0 chr11 19890477 19890623 -101953233 - B1_Mm SINE Alu 0 147 1 8 736 266 103 224 0 chr11 19890626 19890684 -101953172 + B2_Mm1a SINE B2 123 193 0 8 736 543 43 0 0 chr11 19893607 19893677 -101950179 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 736 326 152 152 0 chr11 19894905 19894971 -101948885 + PB1 SINE Alu 50 125 -2 8 736 650 204 37 0 chr11 19895007 19895115 -101948741 + RSINE1 SINE B4 44 155 -10 8 736 294 302 85 31 chr11 19896686 19896816 -101947040 + ID_B1 SINE B4 39 175 -49 8 736 420 286 9 19 chr11 19896732 19896839 -101947017 + PB1D10 SINE Alu 10 115 -2 8 736 1444 49 16 16 chr11 19897263 19897448 -101946408 + B2_Mm2 SINE B2 2 186 -9 8 736 744 249 134 15 chr11 19898637 19898898 -101944958 + B4A SINE B4 1 292 0 8 736 251 236 39 0 chr11 19899165 19899243 -101944613 - ID4_ SINE ID -44 108 26 8 736 266 171 17 40 chr11 19899633 19899700 -101944156 + B1_Mur4 SINE Alu 2 65 -83 8 736 1655 36 5 0 chr11 19899700 19899892 -101943964 - B2_Mm1t SINE B2 0 193 1 8 736 1633 36 0 0 chr11 19899909 19900101 -101943755 - B2_Mm1a SINE B2 0 193 2 8 736 218 147 29 0 chr11 19900101 19900135 -101943721 + B1_Mur4 SINE Alu 55 89 -61 8 736 650 250 71 19 chr11 19900445 19900600 -101943256 - ID_B1 SINE B4 -7 217 55 8 736 313 248 78 124 chr11 19901458 19901587 -101942269 - B1F2 SINE Alu -25 124 2 8 736 400 311 171 35 chr11 19901588 19901655 -101942201 - Charlie1a DNA MER1_type -431 1024 958 8 736 836 173 146 5 chr11 19901655 19901847 -101942009 - ID_B1 SINE B4 -4 220 2 9 736 400 311 171 35 chr11 19901847 19902036 -101941820 - Charlie1a DNA MER1_type -498 957 734 8 736 210 244 22 0 chr11 19902146 19902191 -101941665 - B1F1 SINE Alu -101 48 3 9 736 352 251 51 21 chr11 19902388 19902483 -101941373 + B3 SINE B2 97 215 -1 9 736 382 224 59 32 chr11 19902709 19902816 -101941040 + B1F SINE Alu 17 141 -8 9 736 267 312 54 74 chr11 19902963 19903112 -101940744 + Charlie1a DNA MER1_type 1050 1195 -260 9 736 432 0 0 0 chr11 19903455 19903503 -101940353 + (TC)n Simple_repeat Simple_repeat 2 49 0 9 736 473 212 220 0 chr11 19903606 19903724 -101940132 - B3 SINE B2 -8 208 65 9 736 364 327 26 0 chr11 19903974 19904034 -101939822 + ID SINE ID 21 83 -141 9 736 229 295 21 83 chr11 19904034 19904130 -101939726 + B1F1 SINE Alu 1 90 -59 9 736 1446 86 5 0 chr11 19904215 19904401 -101939455 - B2_Mm1a SINE B2 -6 187 1 9 736 771 206 0 27 chr11 19906307 19906457 -101937399 + B1F2 SINE Alu 3 148 -1 9 736 320 299 117 25 chr11 19906481 19906601 -101937255 + RSINE1 SINE B4 11 141 -24 9 736 724 238 71 41 chr11 19906796 19906993 -101936863 + B3 SINE B2 2 204 -12 9 736 676 218 29 103 chr11 19907303 19907477 -101936379 + RSINE1 SINE B4 3 163 -2 9 736 263 200 91 15 chr11 19908245 19908311 -101935545 + ID4 SINE ID 3 73 -10 9 736 556 267 52 46 chr11 19909227 19909400 -101934456 - MTE2b LTR MaLR -29 350 177 9 736 267 300 0 36 chr11 19909619 19909702 -101934154 - B4 SINE B4 -210 82 3 9 736 607 265 58 44 chr11 19909820 19910025 -101933831 - B3 SINE B2 -6 210 3 9 736 773 158 6 70 chr11 19910235 19910248 -101933608 - B1_Mur3 SINE Alu 0 149 140 9 736 1096 36 40 0 chr11 19910248 19910500 -101933356 + (TTGG)n Simple_repeat Simple_repeat 1 262 0 9 736 773 158 6 70 chr11 19910500 19910641 -101933215 - B1_Mur3 SINE Alu -10 139 3 9 736 239 289 102 10 chr11 19910665 19910763 -101933093 + L1MC1 LINE L1 6197 6303 -30 9 736 270 231 63 13 chr11 19912389 19912468 -101931388 + MLT1A1 LTR MaLR 326 408 0 9 736 477 193 113 100 chr11 19912868 19913018 -101930838 - RSINE1 SINE B4 0 165 14 9 736 782 194 64 6 chr11 19913478 19913649 -101930207 + ORR1D2-int LTR MaLR 3 183 -1187 9 736 406 194 30 10 chr11 19913619 19913718 -101930138 + ORR1D2-int LTR MaLR 1268 1368 -2 9 736 509 228 542 8 chr11 19913733 19913971 -101929885 + ORR1D2 LTR MaLR 6 370 0 9 736 899 93 48 54 chr11 19914020 19914167 -101929689 + B1_Mus2 SINE Alu 2 147 0 9 736 1265 28 0 0 chr11 19914427 19914569 -101929287 - B1_Mm SINE Alu -5 142 1 9 736 1191 112 84 0 chr11 19914904 19915083 -101928773 + B2_Mm2 SINE B2 1 194 -1 9 736 473 221 346 19 chr11 19915423 19915631 -101928225 - MTD LTR MaLR -23 396 121 9 736 1106 48 0 58 chr11 19915768 19915922 -101927934 + B1_Mus2 SINE Alu 1 145 -2 9 736 525 257 99 99 chr11 19915937 19916170 -101927686 - MTC-int LTR MaLR -206 1052 820 9 736 769 297 72 97 chr11 19916167 19916305 -101927551 - MTC-int LTR MaLR -722 536 393 9 736 654 157 164 8 chr11 19916305 19916433 -101927423 - B1_Mur4 SINE Alu -2 148 1 9 736 769 297 72 97 chr11 19916433 19916738 -101927118 - MTC-int LTR MaLR -866 392 104 9 736 214 109 102 61 chr11 19916759 19916808 -101927048 + B1_Mur4 SINE Alu 92 142 -8 9 736 247 219 0 22 chr11 19917076 19917127 -101926729 + PB1D7 SINE Alu 1 50 -70 9 736 494 235 204 25 chr11 19917180 19917337 -101926519 + B3A SINE B2 8 192 -6 9 736 396 265 39 39 chr11 19917341 19917443 -101926413 - B3A SINE B2 -49 149 48 9 736 397 221 10 69 chr11 19917462 19917564 -101926292 + PB1D10 SINE Alu 15 110 -7 9 736 1203 57 0 0 chr11 19917582 19917723 -101926133 + B1_Mus2 SINE Alu 1 141 -6 9 736 276 282 167 16 chr11 19917871 19917997 -101925859 - RSINE1 SINE B4 -4 161 17 9 736 180 219 0 0 chr11 19918647 19918688 -101925168 - L2a LINE L2 0 3426 3386 9 736 530 184 189 16 chr11 19918877 19919004 -101924852 + B1F1 SINE Alu 1 149 0 9 736 292 188 21 0 chr11 19919013 19919061 -101924795 + ID_B1 SINE B4 79 127 -97 9 736 524 278 195 106 chr11 19919060 19919393 -101924463 - MTE2a LTR MaLR -17 362 3 9 736 386 300 68 23 chr11 19919543 19919676 -101924180 + RSINE1 SINE B4 12 150 -15 9 736 624 162 29 0 chr11 19919694 19919799 -101924057 - PB1D9 SINE Alu -12 108 1 9 736 711 244 27 67 chr11 19919825 19920049 -101923807 + B3 SINE B2 2 216 0 9 736 355 223 116 11 chr11 19920080 19920175 -101923681 + PB1D9 SINE Alu 14 118 -2 9 736 524 242 88 41 chr11 19920352 19920546 -101923310 - ID_B1 SINE B4 -7 217 15 9 737 285 29 0 0 chr11 19923021 19923055 -101920801 + (CAGT)n Simple_repeat Simple_repeat 1 34 0 9 737 24 32 0 0 chr11 19925121 19925152 -101918704 + AT_rich Low_complexity Low_complexity 1 31 0 9 737 607 297 29 8 chr11 19925173 19925335 -101918521 - B3A SINE B2 0 198 39 9 737 258 197 411 28 chr11 19925458 19925568 -101918288 + B3 SINE B2 17 183 -33 9 737 288 102 0 0 chr11 19925568 19925617 -101918239 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 737 369 0 0 0 chr11 19925617 19925657 -101918199 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 737 258 197 411 28 chr11 19925657 19925686 -101918170 + B3 SINE B2 184 210 -6 9 737 210 123 400 27 chr11 19925731 19925806 -101918050 + PB1D7 SINE Alu 18 120 0 9 737 267 329 26 0 chr11 19925832 19925908 -101917948 + B1F SINE Alu 41 118 -31 9 737 261 274 0 4 chr11 19926852 19926916 -101916940 - ID4 SINE ID 0 83 21 9 737 738 232 192 117 chr11 19926956 19927351 -101916505 - MTE-int LTR MaLR -609 971 547 9 737 305 274 21 133 chr11 19927522 19927665 -101916191 + ID_B1 SINE B4 6 132 -92 9 737 377 206 152 0 chr11 19927628 19927720 -101916136 + PB1D9 SINE Alu 15 120 0 9 737 392 289 17 17 chr11 19927728 19927844 -101916012 + Charlie1a DNA MER1_type 543 658 -797 9 737 347 143 308 0 chr11 19928091 19928182 -101915674 + ID_B1 SINE B4 104 222 -2 9 737 506 238 182 11 chr11 19928300 19928487 -101915369 + Charlie1a DNA MER1_type 760 978 -477 9 737 1443 225 97 41 chr11 19928488 19928878 -101914978 + RMER1C Other Other 650 1061 -281 9 737 349 269 17 69 chr11 19928994 19929110 -101914746 + MT2B LTR ERVL 166 275 -326 9 737 705 115 81 16 chr11 19929006 19929130 -101914726 + B1_Mur2 SINE Alu 16 147 -2 9 737 738 226 25 0 chr11 19929166 19929336 -101914520 + B3 SINE B2 7 192 -6 9 737 1473 166 36 36 chr11 19929340 19929647 -101914209 + RMER1C Other Other 1036 1342 0 9 737 339 117 0 0 chr11 19929647 19929653 -101914203 + (A)n Simple_repeat Simple_repeat 1 6 0 9 737 1300 20 0 0 chr11 19929653 19929800 -101914056 + B1_Mm SINE Alu 1 147 0 9 737 339 117 0 0 chr11 19929800 19929853 -101914003 + (A)n Simple_repeat Simple_repeat 1 53 0 9 737 538 234 0 36 chr11 19929933 19930044 -101913812 + PB1D9 SINE Alu 14 120 0 9 737 437 291 29 0 chr11 19930158 19930261 -101913595 + B3A SINE B2 1 106 -92 9 737 654 91 0 0 chr11 19930262 19930361 -101913495 + (CA)n Simple_repeat Simple_repeat 1 99 0 9 737 323 120 215 11 chr11 19930389 19930482 -101913374 + Charlie1a DNA MER1_type 1083 1194 -261 9 737 1161 111 52 0 chr11 19930494 19930666 -101913190 + B2_Mm2 SINE B2 1 181 -14 9 737 694 206 54 8 chr11 19930676 19930844 -101913012 + B3 SINE B2 2 168 -27 9 737 457 143 0 0 chr11 19930951 19931021 -101912835 - B1_Mur1 SINE Alu 0 149 80 9 737 491 206 335 24 chr11 19931050 19931214 -101912642 - B3 SINE B2 0 216 2 9 737 366 80 0 0 chr11 19931224 19931274 -101912582 + (T)n Simple_repeat Simple_repeat 1 50 0 9 737 1162 55 14 0 chr11 19931274 19931419 -101912437 - B1_Mm SINE Alu 0 147 1 9 737 447 233 0 91 chr11 19931466 19931598 -101912258 + PB1D9 SINE Alu 1 120 0 9 737 944 241 24 0 chr11 19931623 19931830 -101912026 + B3 SINE B2 1 212 -4 9 737 345 244 83 116 chr11 19931998 19932019 -101911837 - B4A SINE B4 0 292 271 9 737 1420 14 11 18 chr11 19932019 19932297 -101911559 + (TG)n Simple_repeat Simple_repeat 1 275 0 9 737 345 244 83 116 chr11 19932297 19932454 -101911402 - B4A SINE B4 -22 270 118 9 737 405 230 0 22 chr11 19933359 19933448 -101910408 - B4A SINE B4 -203 89 3 9 737 672 278 14 27 chr11 19933466 19933635 -101910221 - ID_B1 SINE B4 -46 246 84 9 737 246 154 176 122 chr11 19934234 19934308 -101909548 + ID SINE ID 1 78 -146 9 737 1187 43 0 0 chr11 19935042 19935181 -101908675 + B1_Mm SINE Alu 2 140 -7 9 737 215 0 0 62 chr11 19935182 19935214 -101908642 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 9 737 414 262 9 27 chr11 19936304 19936414 -101907442 + B4A SINE B4 1 108 -184 9 737 263 293 0 13 chr11 19936425 19936501 -101907355 + B4A SINE B4 191 265 -27 9 737 189 0 0 0 chr11 19936584 19936605 -101907251 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 737 1237 48 0 0 chr11 19936621 19936768 -101907088 - B1_Mus2 SINE Alu 0 147 1 9 737 241 273 0 0 chr11 19936847 19936902 -101906954 + B1_Mur4 SINE Alu 96 150 0 9 737 305 100 0 20 chr11 19937132 19937183 -101906673 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 9 737 971 129 0 0 chr11 19937546 19937678 -101906178 + B1_Mus2 SINE Alu 1 132 -15 9 737 216 97 0 0 chr11 19938108 19938139 -101905717 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 9 737 711 149 299 0 chr11 19938139 19938293 -101905563 - B3 SINE B2 -15 201 2 9 737 504 210 202 0 chr11 19938340 19938464 -101905392 + ID_B1 SINE B4 76 224 0 9 737 252 214 0 0 chr11 19938581 19938623 -101905233 + PB1D7 SINE Alu 9 50 -70 9 737 720 228 33 19 chr11 19939267 19939459 -101904397 - B3 SINE B2 -1 197 1 9 737 460 265 101 22 chr11 19939477 19939616 -101904240 + L2a LINE L2 2980 3129 -297 9 737 573 15 0 0 chr11 19939625 19939691 -101904165 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 737 360 282 0 0 chr11 19939691 19939769 -101904087 - PB1D9 SINE Alu -41 79 2 9 737 319 249 43 91 chr11 19939787 19939927 -101903929 + B1F SINE Alu 3 136 -11 9 737 889 126 5 168 chr11 19940467 19940687 -101903169 - B2_Mm2 SINE B2 -10 185 2 9 737 368 190 0 12 chr11 19940757 19940842 -101903014 + GA-rich Low_complexity Low_complexity 2 85 0 1 737 1161 59 0 0 chr11 19940844 19940980 -101902876 + B1_Mus1 SINE Alu 2 137 -11 1 737 837 83 23 0 chr11 19940980 19941112 -101902744 + (GA)n Simple_repeat Simple_repeat 1 135 0 1 737 189 0 0 0 chr11 19941181 19941202 -101902654 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 737 256 271 18 12 chr11 19941210 19941280 -101902576 + B1F SINE Alu 2 69 -80 1 737 1093 26 270 0 chr11 19942720 19942872 -101900984 - B2_Mm1a SINE B2 0 193 1 1 737 279 241 69 0 chr11 19943058 19943145 -101900711 - MER20B DNA MER1_type -33 750 658 1 737 598 151 9 36 chr11 19943177 19943287 -101900569 + B1_Mus2 SINE Alu 41 147 0 1 737 451 245 76 70 chr11 19943339 19943497 -101900359 - MER20 DNA MER1_type -57 162 4 1 737 242 322 43 0 chr11 19943731 19943846 -101900010 - Tigger7 DNA MER2_type 0 2491 2372 1 737 917 137 151 11 chr11 19943864 19944049 -101899807 + B3 SINE B2 6 216 0 1 737 306 114 132 33 chr11 19944053 19944144 -101899712 - Tigger7 DNA MER2_type -126 2365 2266 1 737 750 188 71 11 chr11 19945683 19945866 -101897990 + B2_Mm2 SINE B2 1 194 -1 1 737 638 109 89 0 chr11 19945901 19946002 -101897854 + B2_Mm2 SINE B2 3 112 -83 1 737 267 31 0 0 chr11 19946363 19946395 -101897461 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 737 1202 75 0 0 chr11 19946534 19946681 -101897175 + B1_Mus2 SINE Alu 1 147 0 1 737 198 0 0 0 chr11 19946681 19946703 -101897153 + (A)n Simple_repeat Simple_repeat 1 22 0 1 737 429 242 8 16 chr11 19946778 19946900 -101896956 + ID_B1 SINE B4 99 219 -5 1 737 1317 107 21 0 chr11 19946927 19947114 -101896742 + B2_Mm2 SINE B2 4 194 -1 1 737 243 269 117 11 chr11 19947375 19947469 -101896387 - MER5B DNA MER1_type -2 176 73 1 737 1310 67 67 0 chr11 19948121 19948301 -101895555 - B2_Mm2 SINE B2 -1 194 3 1 737 413 175 138 55 chr11 19948691 19948800 -101895056 - PB1D9 SINE Alu -2 118 1 1 737 2645 62 32 111 chr11 19949255 19949476 -101894380 + MTB LTR MaLR 1 190 -210 1 737 207 0 0 0 chr11 19949476 19949499 -101894357 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1 737 2645 62 32 111 chr11 19949499 19949711 -101894145 + MTB LTR MaLR 191 400 0 1 737 6479 67 35 35 chr11 19949712 19950486 -101893370 + MTB-int LTR MaLR 5 808 -984 1 737 1130 68 7 0 chr11 19950486 19950632 -101893224 + B1_Mus2 SINE Alu 1 147 0 1 737 6479 67 35 35 chr11 19950632 19950892 -101892964 + MTB-int LTR MaLR 809 1039 -753 1 737 417 333 0 52 chr11 19950909 19951064 -101892792 + RSINE1 SINE B4 3 149 -16 1 737 346 239 45 0 chr11 19951135 19951223 -101892633 - PB1D9 SINE Alu 0 120 29 1 737 225 0 0 0 chr11 19951355 19951380 -101892476 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 737 526 187 84 0 chr11 19951455 19951562 -101892294 + RSINE1 SINE B4 3 118 -47 1 737 1641 37 0 0 chr11 19951681 19951868 -101891988 - B2_Mm1a SINE B2 -5 188 2 1 737 1613 158 74 89 chr11 19952614 19952838 -101891018 - MTC LTR MaLR -8 413 211 1 737 704 156 98 56 chr11 19952838 19952981 -101890875 - B1_Mur3 SINE Alu 0 149 1 1 737 1613 158 74 89 chr11 19952981 19953160 -101890696 - MTC LTR MaLR -211 210 16 1 737 590 195 141 0 chr11 19953749 19953877 -101889979 + B1F1 SINE Alu 3 148 -1 1 737 690 13 0 0 chr11 19954678 19954757 -101889099 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 737 216 0 0 0 chr11 19955101 19955125 -101888731 + (T)n Simple_repeat Simple_repeat 1 24 0 1 737 1161 68 0 0 chr11 19955125 19955272 -101888584 - B1_Mus2 SINE Alu 0 147 1 1 737 469 200 10 0 chr11 19955570 19955670 -101888186 + PB1D7 SINE Alu 20 120 0 1 737 815 227 10 1 chr11 19955681 19955857 -101887999 + B3A SINE B2 2 181 -35 1 737 223 191 43 14 chr11 19956093 19956162 -101887694 - PB1D10 SINE Alu -18 99 29 1 737 471 208 39 31 chr11 19956298 19956427 -101887429 + B2_Mm2 SINE B2 47 176 -19 1 737 1705 103 65 19 chr11 19956717 19957024 -101886832 + ORR1A4 LTR MaLR 1 321 -8 1 737 836 204 75 54 chr11 19957146 19957332 -101886524 - B2_Mm2 SINE B2 -3 190 1 1 737 952 204 11 38 chr11 19957457 19957640 -101886216 - Lx8 LINE L1 -183 7290 7113 1 737 504 272 0 0 chr11 19957770 19957884 -101885972 - PB1D7 SINE Alu -5 115 2 1 737 244 310 14 0 chr11 19957900 19957971 -101885885 - BC1_Mm scRNA scRNA -67 85 14 1 737 425 248 18 0 chr11 19958593 19958706 -101885150 + ORR1C2-int LTR MaLR 101 215 -1155 1 737 247 132 29 0 chr11 19958706 19958774 -101885082 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 737 571 168 20 0 chr11 19958778 19958879 -101884977 - PB1D9 SINE Alu -6 114 12 1 737 500 231 171 24 chr11 19958904 19959068 -101884788 + ORR1C2-int LTR MaLR 216 403 -967 1 737 2941 183 106 50 chr11 19959108 19959892 -101883964 + ORR1C2-int LTR MaLR 543 1370 0 1 737 1351 211 119 6 chr11 19959892 19960236 -101883620 + ORR1C2 LTR MaLR 1 383 -1 1 737 1558 215 124 16 chr11 19960240 19960746 -101883110 + RLTR31_Mm LTR ERVK 1 561 0 1 737 898 227 29 34 chr11 19961148 19961353 -101882503 + B3 SINE B2 9 212 -4 1 737 646 96 9 9 chr11 19961532 19961637 -101882219 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 1 737 1176 55 0 0 chr11 19961637 19961783 -101882073 - B1_Mm SINE Alu -1 146 1 1 737 454 174 57 114 chr11 19961826 19961949 -101881907 + PB1D9 SINE Alu 5 120 0 1 737 313 204 44 22 chr11 19962020 19962110 -101881746 + PB1D10 SINE Alu 1 92 -25 1 737 435 184 68 26 chr11 19962030 19962147 -101881709 + ID_B1 SINE B4 91 212 -12 1 737 25 31 0 0 chr11 19962487 19962519 -101881337 + AT_rich Low_complexity Low_complexity 1 32 0 1 737 24 0 0 0 chr11 19962582 19962606 -101881250 + AT_rich Low_complexity Low_complexity 1 24 0 1 737 276 100 0 0 chr11 19963267 19963307 -101880549 + (A)n Simple_repeat Simple_repeat 1 40 0 1 737 918 231 67 76 chr11 19965542 19965856 -101878000 + MTC LTR MaLR 1 311 -110 1 737 350 134 87 3 chr11 19966416 19966511 -101877345 + MTC LTR MaLR 306 413 -8 1 737 685 199 20 34 chr11 19966674 19966820 -101877036 - B1_Mur2 SINE Alu -1 148 5 1 737 617 203 161 5 chr11 19966940 19967133 -101876723 - RMER10A LTR ERVL -4 438 216 1 737 1204 29 0 0 chr11 19967422 19967560 -101876296 + B1_Mm SINE Alu 2 139 -8 1 737 194 0 39 0 chr11 19967562 19967588 -101876268 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 737 1309 79 62 0 chr11 19967619 19967797 -101876059 + B2_Mm2 SINE B2 2 190 -5 1 737 562 246 84 17 chr11 19968021 19968199 -101875657 + B3A SINE B2 9 198 0 1 737 219 139 0 0 chr11 19968792 19968828 -101875028 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 737 720 141 86 29 chr11 19968854 19968993 -101874863 - B1_Mus1 SINE Alu 0 148 2 1 737 4256 54 19 2 chr11 19969083 19969620 -101874236 + L1_Mus2 LINE L1 6021 6566 0 1 737 750 218 128 0 chr11 19969655 19969834 -101874022 - B3 SINE B2 -13 203 2 1 737 276 233 68 0 chr11 19970207 19970280 -101873576 + L2a LINE L2 2915 2992 -434 1 737 1545 42 0 40 chr11 19970784 19970984 -101872872 + B2_Mm1t SINE B2 2 193 0 1 737 21 0 0 0 chr11 19970997 19971018 -101872838 + AT_rich Low_complexity Low_complexity 1 21 0 1 737 38 22 0 0 chr11 19971552 19971597 -101872259 + AT_rich Low_complexity Low_complexity 1 45 0 1 737 383 263 105 0 chr11 19971754 19971868 -101871988 + B1F2 SINE Alu 23 148 -1 1 737 365 71 36 0 chr11 19971885 19971941 -101871915 + (GGGAGA)n Simple_repeat Simple_repeat 1 58 0 1 737 1381 95 0 16 chr11 19972029 19972222 -101871634 + B2_Mm2 SINE B2 3 192 -3 1 737 228 172 125 0 chr11 19972668 19972732 -101871124 + ID4 SINE ID 9 80 -3 1 737 390 318 26 39 chr11 19972892 19973046 -101870810 + RCHARR1 DNA MER1_type 13 164 -810 1 737 674 148 74 0 chr11 19973204 19973326 -101870530 + B1_Mus1 SINE Alu 18 148 0 1 737 647 178 0 36 chr11 19973321 19973461 -101870395 + RCHARR1 DNA MER1_type 481 615 -359 1 737 637 205 110 0 chr11 19973543 19973670 -101870186 - B1_Mur1 SINE Alu -2 147 7 1 737 1083 184 43 5 chr11 19973758 19973966 -101869890 - B3 SINE B2 0 216 1 1 737 1167 68 0 0 chr11 19973982 19974129 -101869727 - B1_Mus2 SINE Alu 0 147 1 1 737 591 225 21 76 chr11 19974129 19974365 -101869491 + RCHARR1 DNA MER1_type 726 948 -26 1 737 594 227 0 56 chr11 19974394 19974520 -101869336 + B1_Mur1 SINE Alu 8 126 -23 1 737 595 195 60 27 chr11 19974548 19974690 -101869166 + MT2B LTR ERVL 2 135 -466 1 737 753 259 80 61 chr11 19974690 19974959 -101868897 + MT2B LTR ERVL 277 557 -44 1 737 180 0 0 0 chr11 19974959 19974979 -101868877 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 737 321 47 0 0 chr11 19974981 19975024 -101868832 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 737 753 259 80 61 chr11 19975024 19975063 -101868793 + MT2B LTR ERVL 558 592 -9 1 737 251 286 26 18 chr11 19975104 19975218 -101868638 + L1M1 LINE L1 5550 5664 -636 1 737 1289 27 0 0 chr11 19975220 19975367 -101868489 + B1_Mm SINE Alu 1 147 0 1 737 734 263 80 29 chr11 19975382 19975656 -101868200 + L1MA8 LINE L1 5762 6049 -242 1 737 1208 41 0 7 chr11 19975821 19975969 -101867887 - B1_Mm SINE Alu 0 147 1 1 737 198 0 0 0 chr11 19975992 19976014 -101867842 + (A)n Simple_repeat Simple_repeat 1 22 0 1 737 563 113 124 62 chr11 19976018 19976131 -101867725 + PB1D9 SINE Alu 1 120 0 1 737 460 236 97 71 chr11 19976155 19976310 -101867546 + RSINE1 SINE B4 6 164 -1 1 737 514 209 86 45 chr11 19976406 19976662 -101867194 + RMER17C LTR ERVK 1 316 -94 1 737 617 139 13 162 chr11 19976763 19976917 -101866939 + B1_Mus1 SINE Alu 17 147 -1 1 737 554 193 0 52 chr11 19977032 19977147 -101866709 - B3A SINE B2 -87 111 3 1 737 212 339 0 0 chr11 19977568 19977627 -101866229 + RSINE1 SINE B4 78 136 -29 1 737 208 102 0 39 chr11 19977648 19977660 -101866196 + (CCAA)n Simple_repeat Simple_repeat 2 13 0 1 737 1722 26 0 0 chr11 19977660 19977852 -101866004 + B2_Mm1a SINE B2 2 193 0 1 737 208 102 0 39 chr11 19977852 19977890 -101865966 + (CCAA)n Simple_repeat Simple_repeat 2 38 0 1 737 411 229 70 44 chr11 19977897 19978011 -101865845 + PB1D10 SINE Alu 1 117 0 1 737 274 271 8 93 chr11 19978149 19978205 -101865651 - B1F2 SINE Alu -40 109 2 1 737 274 242 16 0 chr11 19978205 19978267 -101865589 - B4A SINE B4 -143 149 87 1 737 211 337 61 31 chr11 19978278 19978376 -101865480 - B1F1 SINE Alu -43 106 6 1 737 460 233 112 0 chr11 19978700 19978816 -101865040 - B1_Mus1 SINE Alu -10 138 10 1 737 280 306 14 0 chr11 19978758 19978830 -101865026 - B4A SINE B4 -140 152 80 1 737 337 224 5 214 chr11 19978844 19979031 -101864825 - B1F1 SINE Alu 0 149 2 1 737 1099 75 14 0 chr11 19979044 19979190 -101864666 + B1_Mus1 SINE Alu 1 148 0 1 737 195 69 0 0 chr11 19979192 19979221 -101864635 + (A)n Simple_repeat Simple_repeat 1 29 0 1 737 243 200 192 41 chr11 19979276 19979288 -101864568 + B1F SINE Alu 66 149 0 1 737 258 109 0 98 chr11 19979288 19979349 -101864507 + ID_B1 SINE B4 170 224 0 1 737 269 142 135 6 chr11 19979419 19979489 -101864367 + PB1D10 SINE Alu 14 100 -17 1 737 342 0 0 0 chr11 19979896 19979934 -101863922 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 737 273 288 0 27 chr11 19980251 19980326 -101863530 + RSINE1 SINE B4 8 80 -85 1 737 527 280 58 26 chr11 19980387 19980578 -101863278 - B3A SINE B2 -1 197 1 1 737 216 0 0 0 chr11 19980607 19980631 -101863225 + (A)n Simple_repeat Simple_repeat 1 24 0 1 737 963 160 109 35 chr11 19980939 19981140 -101862716 - B3 SINE B2 0 216 1 1 737 670 203 6 108 chr11 19981152 19981318 -101862538 - B1_Mur2 SINE Alu 0 149 1 1 737 449 244 48 75 chr11 19981423 19981569 -101862287 - RSINE1 SINE B4 -16 149 8 1 737 1165 194 209 5 chr11 19981582 19982103 -101861753 + RMER6D LTR ERVK 137 756 0 1 737 3028 50 0 0 chr11 19982377 19982740 -101861116 + L1_Mus1 LINE L1 6205 6567 0 1 737 204 125 0 0 chr11 19982756 19982788 -101861068 + (A)n Simple_repeat Simple_repeat 1 32 0 1 737 264 266 71 41 chr11 19983074 19983172 -101860684 + RSINE1 SINE B4 43 143 -22 1 737 598 254 73 23 chr11 19983244 19983421 -101860435 - B3A SINE B2 -10 188 3 1 737 292 115 39 0 chr11 19983540 19983592 -101860264 - B2_Mm2 SINE B2 -95 100 47 1 737 1409 62 11 0 chr11 19983621 19983797 -101860059 - B2_Mm1t SINE B2 -14 179 2 1 737 252 229 0 0 chr11 19983853 19983901 -101859955 - B1_Mus2 SINE Alu -92 55 8 1 737 234 91 0 0 chr11 19983910 19983943 -101859913 + (A)n Simple_repeat Simple_repeat 1 33 0 1 737 219 227 0 0 chr11 19983993 19984037 -101859819 + B1F2 SINE Alu 6 49 -100 1 737 468 183 145 17 chr11 19984059 19984176 -101859680 + B1_Mur2 SINE Alu 13 144 -5 1 737 347 244 0 0 chr11 19984179 19984257 -101859599 + ID_B1 SINE B4 143 220 -4 1 737 275 288 0 48 chr11 19984296 19984380 -101859476 - RSINE1 SINE B4 -27 138 59 1 737 22 35 0 0 chr11 19984422 19984451 -101859405 + AT_rich Low_complexity Low_complexity 1 29 0 1 737 332 258 203 8 chr11 19984860 19984993 -101858863 - B4A SINE B4 -130 162 4 1 737 580 251 96 5 chr11 19985001 19985189 -101858667 - B4A SINE B4 -86 206 2 1 737 758 274 5 35 chr11 19985466 19985663 -101858193 - B3A SINE B2 0 198 8 1 737 774 178 30 0 chr11 19985791 19985926 -101857930 + B1_Mus1 SINE Alu 1 139 -9 1 737 584 260 138 0 chr11 19986070 19986251 -101857605 + B3 SINE B2 4 209 -7 1 737 648 276 57 6 chr11 19986356 19986531 -101857325 - B3 SINE B2 0 216 33 1 737 355 298 68 34 chr11 19986607 19986753 -101857103 + RSINE1 SINE B4 15 165 0 1 737 1701 21 5 0 chr11 19986870 19987062 -101856794 + B2_Mm1t SINE B2 1 193 0 1 737 630 185 56 16 chr11 19987207 19987333 -101856523 + B1_Mur2 SINE Alu 3 133 -16 1 737 426 248 87 60 chr11 19987393 19987574 -101856282 + B3 SINE B2 24 195 -3 1 737 206 175 47 16 chr11 19987634 19987647 -101856209 + A-rich Low_complexity Low_complexity 3 15 0 1 737 1189 61 0 0 chr11 19987647 19987794 -101856062 + B1_Mm SINE Alu 1 147 0 1 737 206 175 47 16 chr11 19987794 19987844 -101856012 + A-rich Low_complexity Low_complexity 16 68 0 1 737 466 260 114 8 chr11 19987850 19987982 -101855874 + B1F1 SINE Alu 3 148 -1 1 737 244 354 10 20 chr11 19988390 19988488 -101855368 + RSINE1 SINE B4 69 165 0 1 737 905 232 10 10 chr11 19988497 19988689 -101855167 + B3A SINE B2 1 192 -6 1 737 1201 170 77 31 chr11 19988737 19988998 -101854858 + Lx9 LINE L1 7205 7477 -167 1 737 191 103 26 0 chr11 19989003 19989042 -101854814 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1 737 667 154 121 8 chr11 19989053 19989177 -101854679 + B1_Mus1 SINE Alu 5 142 -6 1 737 348 176 0 0 chr11 19989179 19989247 -101854609 + GA-rich Low_complexity Low_complexity 4 71 0 1 737 262 264 46 0 chr11 19989251 19989338 -101854518 + Lx9 LINE L1 7531 7621 -23 1 737 450 0 0 0 chr11 19989352 19989402 -101854454 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 737 391 273 0 35 chr11 19989497 19989611 -101854245 - B1_Mur1 SINE Alu 0 149 40 1 737 708 130 198 11 chr11 19989648 19989808 -101854048 - MTC LTR MaLR -12 409 220 1 737 617 153 27 0 chr11 19989828 19989939 -101853917 - B1_Mur4 SINE Alu -25 125 12 1 737 697 132 21 29 chr11 19989944 19990084 -101853772 - MTC LTR MaLR -211 210 72 1 737 833 141 0 0 chr11 19990089 19990224 -101853632 - B1_Mus1 SINE Alu -5 143 9 1 737 207 100 0 0 chr11 19990290 19990320 -101853536 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1 737 875 196 90 0 chr11 19990377 19990566 -101853290 - B3 SINE B2 0 216 11 1 737 410 252 10 0 chr11 19990718 19990817 -101853039 + B4A SINE B4 2 101 -191 1 737 402 270 99 47 chr11 19990824 19990995 -101852861 - B3A SINE B2 -18 180 1 1 737 1598 42 5 0 chr11 19991035 19991227 -101852629 + B2_Mm1t SINE B2 1 193 0 1 737 1683 27 0 0 chr11 19991707 19991895 -101851961 + B2_Mm1a SINE B2 1 188 -5 1 737 266 263 28 120 chr11 19991967 19992075 -101851781 + RSINE1 SINE B4 68 165 0 1 737 284 263 78 29 chr11 19992159 19992261 -101851595 + RSINE1 SINE B4 59 165 0 1 737 248 243 13 67 chr11 19992390 19992465 -101851391 + ID4 SINE ID 2 72 -11 1 737 180 158 0 0 chr11 19992468 19992506 -101851350 + (GCTG)n Simple_repeat Simple_repeat 4 41 0 1 737 382 309 151 40 chr11 19993015 19993107 -101850749 + L2 LINE L2 2302 2391 -1028 1 737 486 88 0 0 chr11 19993107 19993175 -101850681 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 737 382 309 151 40 chr11 19993175 19993486 -101850370 + L2 LINE L2 2392 2749 -670 1 737 412 184 0 22 chr11 19995355 19995444 -101848412 + BC1_Mm scRNA scRNA 3 89 -63 1 737 784 108 0 8 chr11 19995805 19995926 -101847930 - B1_Mur2 SINE Alu -7 142 23 1 737 1266 94 33 0 chr11 19996415 19996596 -101847260 + B2_Mm1a SINE B2 1 187 -6 1 737 1089 158 94 0 chr11 19996658 19996861 -101846995 + URR1A DNA MER1_type 5 226 0 1 737 537 256 11 72 chr11 19996878 19996961 -101846895 + ID SINE ID 3 74 -150 1 737 305 248 32 89 chr11 19996961 19997085 -101846771 + PB1D10 SINE Alu 1 117 0 1 737 210 182 0 22 chr11 19997145 19997190 -101846666 + B1F SINE Alu 55 98 -51 1 737 210 245 0 0 chr11 19997158 19997211 -101846645 + PB1D10 SINE Alu 64 116 -1 1 737 260 290 40 61 chr11 19997212 19997311 -101846545 + PB1D10 SINE Alu 1 97 -20 1 737 445 240 15 52 chr11 19997222 19997358 -101846498 + ID_B1 SINE B4 94 224 0 1 737 252 0 0 0 chr11 19998040 19998068 -101845788 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 737 512 157 83 9 chr11 19999569 19999678 -101844178 + PB1D9 SINE Alu 4 120 0 1 737 597 24 12 0 chr11 20001004 20001087 -101842769 + B1_Mus1 SINE Alu 1 84 -64 1 737 367 88 0 0 chr11 20001383 20001440 -101842416 + B1_Mur4 SINE Alu 94 150 0 2 737 2447 138 11 66 chr11 20001575 20002016 -101841840 - MTC LTR MaLR -4 417 1 3 737 483 311 12 64 chr11 20002439 20002480 -101841376 + RSINE1 SINE B4 3 43 -122 4 737 4039 49 4 0 chr11 20002480 20002953 -101840903 + MT2C_Mm LTR ERVL 1 475 0 5 737 483 311 12 64 chr11 20002953 20003083 -101840773 + RSINE1 SINE B4 44 165 0 4 737 326 183 42 0 chr11 20003155 20003226 -101840630 + MER2 DNA MER2_type 111 184 -161 6 737 497 266 13 83 chr11 20003214 20003370 -101840486 + ID_B1 SINE B4 72 216 -8 7 737 262 149 64 0 chr11 20003330 20003377 -101840479 + PB1D7 SINE Alu 70 119 -1 8 737 421 246 184 14 chr11 20003890 20004180 -101839676 - L1MA5A LINE L1 -335 5965 5617 9 737 548 300 137 4 chr11 20004180 20004428 -101839428 - B4 SINE B4 -8 284 4 1 737 421 270 196 36 chr11 20004428 20004522 -101839334 - L1MA5A LINE L1 -681 5616 5518 9 737 484 242 40 32 chr11 20004551 20004675 -101839181 + RSINE1 SINE B4 5 129 -36 1 737 237 315 63 32 chr11 20005375 20005470 -101838386 + PB1D10 SINE Alu 2 99 -18 1 737 920 103 0 14 chr11 20005708 20005846 -101838010 + B2_Mm2 SINE B2 1 136 -59 1 737 22 0 0 0 chr11 20005846 20005868 -101837988 + AT_rich Low_complexity Low_complexity 1 22 0 1 737 260 279 0 0 chr11 20005971 20006039 -101837817 + ID4 SINE ID 14 81 -2 1 737 1203 55 0 0 chr11 20006170 20006316 -101837540 + B1_Mus1 SINE Alu 3 148 0 1 737 1538 62 5 0 chr11 20006467 20006659 -101837197 - B2_Mm1a SINE B2 0 193 1 1 737 808 175 21 0 chr11 20006674 20006817 -101837039 + B3 SINE B2 14 159 -57 1 737 535 226 158 0 chr11 20007227 20007360 -101836496 + ID_B1 SINE B4 1 154 -70 1 737 317 208 55 14 chr11 20007395 20007468 -101836388 + ID_B1 SINE B4 141 216 -8 1 737 227 257 88 71 chr11 20008044 20008157 -101835699 - RMER1C Other Other -4 1338 1224 2 737 433 274 186 55 chr11 20008064 20008504 -101835352 - Lx8 LINE L1 -6 7467 6970 2 737 269 250 0 0 chr11 20008507 20008559 -101835297 - PB1D7 SINE Alu -12 108 57 2 737 240 323 29 29 chr11 20008595 20008697 -101835159 - PB1D10 SINE Alu -6 111 10 2 737 1133 56 7 7 chr11 20008724 20008869 -101834987 + B1_Mm SINE Alu 1 145 -2 2 737 422 169 233 55 chr11 20008869 20009027 -101834829 - B2_Mm2 SINE B2 -3 192 5 2 737 1104 77 7 0 chr11 20009453 20009596 -101834260 + B1_Mus1 SINE Alu 3 146 -2 2 737 291 114 0 0 chr11 20009596 20009640 -101834216 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2 737 817 200 113 0 chr11 20009807 20009992 -101833864 + B3 SINE B2 1 206 -10 2 737 370 246 125 16 chr11 20010197 20010325 -101833531 - ID_B1 SINE B4 -82 142 1 2 737 260 312 16 0 chr11 20010379 20010443 -101833413 - RSINE1 SINE B4 -19 146 82 3 737 234 275 184 34 chr11 20010474 20010621 -101833235 - B4A SINE B4 -123 169 1 3 737 899 80 0 0 chr11 20010942 20011067 -101832789 - B1_Mus2 SINE Alu -21 126 2 3 737 286 264 0 35 chr11 20011067 20011101 -101832755 - ORR1B1-int LTR MaLR -861 648 620 3 737 24 0 0 0 chr11 20011138 20011162 -101832694 + AT_rich Low_complexity Low_complexity 1 24 0 3 737 279 262 225 0 chr11 20011163 20011243 -101832613 - B1_Mur4 SINE Alu -14 106 9 3 737 277 316 0 0 chr11 20011181 20011257 -101832599 - B4 SINE B4 -137 155 80 3 737 869 270 5 10 chr11 20011276 20011478 -101832378 - B3 SINE B2 -7 209 9 3 737 30 69 0 0 chr11 20012678 20012736 -101831120 + GC_rich Low_complexity Low_complexity 1 58 0 3 737 926 127 21 0 chr11 20013524 20013666 -101830190 + B1_Mus1 SINE Alu 3 147 -1 3 737 672 157 20 79 chr11 20013685 20013837 -101830019 + B1_Mur3 SINE Alu 7 149 0 4 737 1285 14 7 0 chr11 20014207 20014353 -101829503 - B1_Mm SINE Alu 0 147 1 4 737 218 271 0 0 chr11 20015369 20015417 -101828439 - B1_Mur1 SINE Alu -35 114 67 4 737 219 87 71 14 chr11 20015769 20015839 -101828017 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 737 213 214 89 0 chr11 20016076 20016132 -101827724 + ID SINE ID 25 85 -139 4 737 1177 68 0 0 chr11 20016514 20016661 -101827195 - B1_Mus2 SINE Alu 0 147 1 4 737 2770 135 26 24 chr11 20016695 20017158 -101826698 + RMER1B Other Other 603 1066 0 4 737 380 223 97 0 chr11 20017199 20017302 -101826554 + MTE2b LTR MaLR 267 379 0 4 737 660 115 99 8 chr11 20017347 20017478 -101826378 + URR1B DNA MER1_type 83 225 0 4 737 630 184 57 99 chr11 20017891 20018140 -101825716 + RMER19B LTR ERVK 1 194 -708 4 737 442 169 146 46 chr11 20018124 20018254 -101825602 - RLTR20B3 LTR ERVK -414 163 21 5 737 1135 75 0 39 chr11 20018339 20018492 -101825364 - B1_Mus1 SINE Alu 0 148 2 5 737 638 291 81 106 chr11 20018725 20019094 -101824762 - MTE2a LTR MaLR 0 379 20 5 737 722 223 11 39 chr11 20019165 20019347 -101824509 + B3 SINE B2 39 215 -1 5 737 1134 68 7 0 chr11 20019381 20019527 -101824329 + B1_Mm SINE Alu 1 147 0 5 737 189 0 0 0 chr11 20019527 20019548 -101824308 + (A)n Simple_repeat Simple_repeat 1 21 0 5 737 1567 27 5 16 chr11 20019665 20019851 -101824005 - B2_Mm1t SINE B2 -8 185 2 5 737 1568 95 0 18 chr11 20019860 20020086 -101823770 - Lx2 LINE L1 -1 6996 6775 5 737 2715 90 0 19 chr11 20020084 20020456 -101823400 - Lx2 LINE L1 -352 6645 6281 5 737 336 85 0 0 chr11 20020538 20020585 -101823271 - ORR1B1 LTR MaLR -8 359 313 5 737 495 0 0 0 chr11 20020585 20020640 -101823216 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 5 737 1208 53 0 40 chr11 20020644 20020820 -101823036 - B2_Mm2 SINE B2 -26 169 1 6 737 1950 133 69 6 chr11 20020820 20021151 -101822705 - ORR1B1 LTR MaLR -42 352 1 5 737 397 272 69 62 chr11 20021151 20021296 -101822560 + ID_B1 SINE B4 63 208 -16 6 737 465 19 0 0 chr11 20021296 20021350 -101822506 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 737 279 256 45 23 chr11 20021351 20021431 -101822425 + MER2 DNA MER2_type 216 297 -48 6 737 634 189 144 6 chr11 20021431 20021591 -101822265 + ORR1D1 LTR MaLR 1 182 -192 6 737 513 123 0 0 chr11 20021585 20021666 -101822190 + ORR1D1 LTR MaLR 304 384 0 6 737 450 289 62 33 chr11 20021700 20021911 -101821945 - L1MA8 LINE L1 -138 6153 5937 6 737 1246 34 0 7 chr11 20021917 20022065 -101821791 - B1_Mus2 SINE Alu 0 147 1 6 737 1746 251 80 86 chr11 20022695 20023626 -101820230 + RMER17B LTR ERVK 1 925 -33 6 737 189 74 0 0 chr11 20024163 20024190 -101819666 + (CAAAC)n Simple_repeat Simple_repeat 4 30 0 6 737 1164 193 175 44 chr11 20024352 20024513 -101819343 + MTD LTR MaLR 1 193 -226 6 737 240 35 0 0 chr11 20024513 20024542 -101819314 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 737 1164 193 175 44 chr11 20024542 20024722 -101819134 + MTD LTR MaLR 194 387 -32 6 737 714 176 7 35 chr11 20024740 20024881 -101818975 - B1_Mus2 SINE Alu -1 146 10 7 737 680 238 50 6 chr11 20024921 20025103 -101818753 - L1M3e LINE L1 -6838 192 3 7 737 3295 151 29 49 chr11 20025391 20025978 -101817878 - RMER15 LTR ERVL 0 575 1 7 737 469 299 31 0 chr11 20025980 20026107 -101817749 + B1F1 SINE Alu 10 140 -9 7 737 444 280 8 0 chr11 20026112 20026230 -101817626 + ID_B1 SINE B4 105 223 -1 7 737 262 271 14 0 chr11 20026235 20026305 -101817551 + ID_B1 SINE B4 87 157 -67 7 737 805 217 2 0 chr11 20026306 20026476 -101817380 + Lx5 LINE L1 6455 6602 -448 7 737 1133 82 14 0 chr11 20026524 20026670 -101817186 - B1_Mus1 SINE Alu 0 148 1 7 737 210 317 12 0 chr11 20026903 20026985 -101816871 - L2 LINE L2 -870 2549 2467 7 737 257 75 25 0 chr11 20027769 20027809 -101816047 + (TCC)n Simple_repeat Simple_repeat 2 42 0 8 737 186 43 0 0 chr11 20027823 20027846 -101816010 + (CAA)n Simple_repeat Simple_repeat 1 23 0 8 737 954 157 72 27 chr11 20027914 20028137 -101815719 - MTD LTR MaLR -5 414 182 8 737 1865 178 30 5 chr11 20028137 20028619 -101815237 - RLTR20D LTR ERVK 0 568 22 8 737 829 168 60 50 chr11 20028657 20028839 -101815017 - MTD LTR MaLR -232 187 4 8 737 2598 121 38 28 chr11 20028863 20029365 -101814491 - LTRIS4 LTR ERV1 0 507 1 8 737 1753 143 47 112 chr11 20029529 20029914 -101813942 + ORR1B2 LTR MaLR 1 360 -7 8 737 249 187 114 51 chr11 20030204 20030283 -101813573 + RMER10A LTR ERVL 321 404 -38 8 737 848 127 0 4 chr11 20030251 20030411 -101813445 - ORR1A2-int LTR MaLR -1636 156 1 8 737 2246 101 0 89 chr11 20030411 20030485 -101813371 - ORR1A2 LTR MaLR 0 327 270 8 737 243 0 0 0 chr11 20030485 20030512 -101813344 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 737 1132 96 0 0 chr11 20030512 20030658 -101813198 - B1_Mus1 SINE Alu -2 146 1 8 737 2246 101 0 89 chr11 20030658 20030940 -101812916 - ORR1A2 LTR MaLR -58 269 3 8 737 585 244 0 0 chr11 20031062 20031177 -101812679 - B1F SINE Alu -29 120 6 9 737 1163 69 0 0 chr11 20031227 20031372 -101812484 + B1_Mm SINE Alu 2 146 -1 9 737 577 247 20 20 chr11 20031377 20031530 -101812326 - B3A SINE B2 -4 194 42 9 737 230 304 47 56 chr11 20031771 20031984 -101811872 + RMER17C LTR ERVK 141 351 -59 9 737 222 316 65 13 chr11 20032011 20032088 -101811768 + B3A SINE B2 88 168 -30 9 737 361 288 42 0 chr11 20032124 20032277 -101811579 + L1ME3A LINE L1 5816 5979 -183 9 737 355 314 40 8 chr11 20032299 20032424 -101811432 + B1F1 SINE Alu 9 137 -12 9 737 1090 60 0 0 chr11 20032424 20032573 -101811283 + B2_Mm2 SINE B2 2 150 -45 9 737 851 10 19 0 chr11 20032576 20032679 -101811177 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 9 737 1150 75 0 0 chr11 20032858 20033004 -101810852 - B1_Mus2 SINE Alu 0 147 2 9 737 1189 62 0 0 chr11 20033501 20033647 -101810209 - B1_Mus2 SINE Alu 0 147 2 1 737 562 236 31 0 chr11 20033876 20034003 -101809853 - ID_B1 SINE B4 -7 217 87 1 737 468 185 243 7 chr11 20034041 20034177 -101809679 - URR1B DNA MER1_type -57 168 1 1 737 3086 141 101 25 chr11 20034461 20035390 -101808466 - RLTR13D1 LTR ERVK 0 1023 6 1 737 1254 91 42 26 chr11 20035429 20035621 -101808235 + B2_Mm2 SINE B2 1 195 0 1 737 251 318 40 20 chr11 20035730 20035881 -101807975 + MIR SINE MIR 8 161 -107 1 737 234 0 0 0 chr11 20036030 20036056 -101807800 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 737 498 187 65 8 chr11 20036709 20036833 -101807023 - B3 SINE B2 -5 211 81 1 737 223 323 115 0 chr11 20037071 20037167 -101806689 + RSINE1 SINE B4 44 150 -15 1 737 665 266 29 11 chr11 20037249 20037424 -101806432 + MTEa LTR MaLR 1 178 -201 1 737 1393 83 15 20 chr11 20037458 20037654 -101806202 + B2_Mm2 SINE B2 1 195 0 1 737 1484 162 142 6 chr11 20037769 20038086 -101805770 - RLTR31A_Mm LTR ERVK -224 360 1 1 737 356 225 11 0 chr11 20038087 20038176 -101805680 + MTEa LTR MaLR 182 271 -108 1 737 558 112 91 121 chr11 20039105 20039154 -101804702 - B1_Mus1 SINE Alu -20 128 89 1 737 2826 68 139 137 chr11 20039154 20039665 -101804191 - RLTR1B LTR ERV1 0 512 1 1 737 558 112 91 121 chr11 20039665 20039747 -101804109 - B1_Mus1 SINE Alu -60 88 1 1 737 383 173 111 0 chr11 20039909 20039990 -101803866 + B1_Mur4 SINE Alu 50 139 -11 1 737 497 294 20 46 chr11 20039983 20040136 -101803720 + RSINE1 SINE B4 15 163 -2 1 737 396 0 0 0 chr11 20040237 20040281 -101803575 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 737 1571 122 54 22 chr11 20040369 20040645 -101803211 + RLTR17 LTR ERVK 1 285 -407 1 737 1168 206 8 39 chr11 20040645 20040902 -101802954 + RLTR17 LTR ERVK 444 692 0 1 737 263 310 205 0 chr11 20041272 20041443 -101802413 + RMER15 LTR ERVL 370 575 0 1 737 237 236 18 0 chr11 20041535 20041590 -101802266 - ID4 SINE ID -9 74 19 1 737 1213 54 0 0 chr11 20041606 20041753 -101802103 - B1_Mus2 SINE Alu 0 147 1 1 737 827 273 66 4 chr11 20041773 20042001 -101801855 - Lx8 LINE L1 -469 7004 6763 1 737 467 287 15 8 chr11 20042000 20042130 -101801726 + Lx8 LINE L1 7019 7149 -324 1 737 494 208 0 0 chr11 20042130 20042237 -101801619 + B1_Mur1 SINE Alu 36 142 -7 1 737 189 0 0 0 chr11 20042509 20042530 -101801326 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 737 207 84 53 53 chr11 20042922 20042949 -101800907 + A-rich Low_complexity Low_complexity 1 27 0 1 737 1127 62 7 0 chr11 20042949 20043094 -101800762 + B1_Mus2 SINE Alu 1 146 -1 1 737 207 84 53 53 chr11 20043094 20043141 -101800715 + A-rich Low_complexity Low_complexity 28 75 0 1 737 282 190 52 0 chr11 20043147 20043205 -101800651 + B3A SINE B2 2 62 -136 1 737 755 197 7 0 chr11 20043249 20043386 -101800470 + B1_Mur2 SINE Alu 2 139 -10 1 737 432 0 0 0 chr11 20043386 20043434 -101800422 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 737 1154 88 0 0 chr11 20043682 20043829 -101800027 - B1_Mus2 SINE Alu 0 147 1 1 737 1300 98 16 5 chr11 20043831 20044015 -101799841 - B2_Mm2 SINE B2 -9 186 1 1 737 266 167 0 16 chr11 20044099 20044160 -101799696 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 1 737 270 95 0 0 chr11 20044147 20044189 -101799667 + (T)n Simple_repeat Simple_repeat 1 42 0 1 737 840 189 0 0 chr11 20044189 20044337 -101799519 - B1_Mur3 SINE Alu 0 149 2 1 737 495 180 89 95 chr11 20044461 20044516 -101799340 - B2_Mm2 SINE B2 -2 193 148 1 737 393 129 0 0 chr11 20044516 20044586 -101799270 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 737 585 174 12 58 chr11 20044586 20044720 -101799136 - B3 SINE B2 -48 147 5 1 737 2334 106 81 79 chr11 20045283 20045702 -101798154 - RLTR9B2 LTR ERVK 0 420 1 1 737 561 257 5 72 chr11 20045740 20045933 -101797923 + B3A SINE B2 2 181 -17 1 737 182 118 0 29 chr11 20045958 20045972 -101797884 + (GGAA)n Simple_repeat Simple_repeat 2 15 0 1 737 1347 99 16 5 chr11 20045972 20046165 -101797691 + B2_Mm2 SINE B2 1 195 0 1 737 182 118 0 29 chr11 20046165 20046185 -101797671 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 1 737 366 164 0 0 chr11 20046313 20046374 -101797482 + B1_Mus1 SINE Alu 30 90 -58 1 737 273 228 49 37 chr11 20046336 20046418 -101797438 - B1_Mur3 SINE Alu -65 84 2 1 737 1059 58 65 7 chr11 20046774 20046912 -101796944 - B1_Mus2 SINE Alu -1 146 1 1 737 1447 71 11 0 chr11 20047011 20047194 -101796662 - B2_Mm1t SINE B2 -7 186 2 1 737 739 235 69 27 chr11 20047259 20047447 -101796409 - ID_B1 SINE B4 -3 221 26 1 737 32 26 0 0 chr11 20047482 20047521 -101796335 + AT_rich Low_complexity Low_complexity 1 39 0 1 737 1319 98 0 54 chr11 20047586 20047790 -101796066 - B2_Mm2 SINE B2 -1 194 2 1 737 295 286 245 9 chr11 20047813 20048025 -101795831 - RMER15 LTR ERVL -18 557 296 1 737 855 85 0 0 chr11 20048308 20048426 -101795430 + B1_Mm SINE Alu 1 118 -29 1 737 248 0 31 0 chr11 20048445 20048477 -101795379 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 1 737 517 234 37 0 chr11 20048504 20048611 -101795245 + PB1D10 SINE Alu 1 111 -6 1 737 657 38 0 0 chr11 20048633 20048713 -101795143 + (GGGAA)n Simple_repeat Simple_repeat 1 80 0 1 737 1047 207 26 0 chr11 20048847 20049040 -101794816 + B3 SINE B2 2 199 -17 1 737 1662 143 67 96 chr11 20049043 20049114 -101794742 + ORR1C1 LTR MaLR 1 64 -314 1 737 1580 53 5 0 chr11 20049114 20049304 -101794552 + B2_Mm1a SINE B2 2 192 -1 1 737 1662 143 67 96 chr11 20049304 20049504 -101794352 + ORR1C1 LTR MaLR 65 268 -110 1 737 2051 169 113 106 chr11 20049504 20049850 -101794006 - RMER16 LTR ERVK 0 533 185 1 737 1239 48 0 0 chr11 20049850 20049996 -101793860 - B1_Mus1 SINE Alu -2 146 1 1 737 2051 169 113 106 chr11 20049996 20050178 -101793678 - RMER16 LTR ERVK -349 184 1 1 737 1662 143 67 96 chr11 20050178 20050292 -101793564 + ORR1C1 LTR MaLR 269 376 -2 1 737 4075 233 57 53 chr11 20050290 20050807 -101793049 + ORR1C1-int LTR MaLR 1 524 -846 1 737 1261 128 32 0 chr11 20050807 20050994 -101792862 + B2_Mm2 SINE B2 1 193 -2 1 737 4075 233 57 53 chr11 20050994 20051674 -101792182 + ORR1C1-int LTR MaLR 525 1203 -167 1 737 3763 190 50 29 chr11 20051675 20052564 -101791292 - RMER1B Other Other -10 1056 3 1 737 2390 89 40 11 chr11 20052650 20053004 -101790852 + RLTR9A LTR ERVK 5 368 0 1 737 303 28 0 0 chr11 20053173 20053209 -101790647 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 737 855 118 146 138 chr11 20053211 20053409 -101790447 + RLTR45-int LTR ERVK 2094 2305 -4939 1 737 1151 75 0 0 chr11 20053409 20053556 -101790300 + B1_Mus1 SINE Alu 2 148 0 1 737 855 118 146 138 chr11 20053556 20053603 -101790253 + RLTR45-int LTR ERVK 2306 2341 -4903 1 737 509 104 0 0 chr11 20053616 20053693 -101790163 - B1_Mus2 SINE Alu -70 77 1 1 737 3647 139 17 92 chr11 20053707 20053823 -101790033 + RMER16-int LTR ERVK 1325 1428 -5978 1 737 1123 70 0 0 chr11 20053823 20053966 -101789890 + B1_Mm SINE Alu 2 144 -3 1 92 3647 139 17 92 chr11 20053966 20054494 -101789362 + RMER16-int LTR ERVK 1429 1932 -5474 1 738 750 68 0 332 chr11 20054494 20054714 -101789142 + B1_Mus2 SINE Alu 1 147 0 1 738 3647 139 17 92 chr11 20054714 20054814 -101789042 + RMER16-int LTR ERVK 1933 2014 -5392 1 738 10071 152 62 25 chr11 20054833 20056170 -101787686 + RMER16-int LTR ERVK 2221 3603 -1803 1 738 1044 96 0 0 chr11 20056170 20056305 -101787551 + B1_Mus2 SINE Alu 1 135 -12 1 738 207 0 0 0 chr11 20056306 20056329 -101787527 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 738 10071 152 62 25 chr11 20056329 20056541 -101787315 + RMER16-int LTR ERVK 3604 3845 -1561 1 738 3429 23 10 2 chr11 20056541 20056934 -101786922 + MTA_Mm LTR MaLR 1 396 0 1 738 7783 129 76 30 chr11 20056934 20057268 -101786588 + RMER16-int LTR ERVK 3846 4176 -1230 1 738 268 322 40 32 chr11 20057265 20057390 -101786466 + ETnERV2-int LTR ERVK 6086 6211 -1195 1 738 280 182 51 25 chr11 20057556 20057635 -101786221 + ETnERV2-int LTR ERVK 6341 6421 -985 1 738 296 173 0 55 chr11 20057846 20057901 -101785955 + ETnERV2-int LTR ERVK 7331 7382 -24 1 738 875 74 0 0 chr11 20057916 20058038 -101785818 - B1_Mus2 SINE Alu 0 147 26 1 738 1238 112 24 14 chr11 20058083 20058291 -101785565 + RLTR9A LTR ERVK 85 294 -74 1 738 302 345 29 0 chr11 20058438 20058577 -101785279 - B1F SINE Alu -6 143 1 1 738 219 221 127 55 chr11 20058720 20058830 -101785026 + B1F1 SINE Alu 3 120 -29 1 738 732 42 0 0 chr11 20059908 20060004 -101783852 + (TTTTC)n Simple_repeat Simple_repeat 3 98 0 1 738 1171 48 7 7 chr11 20060005 20060151 -101783705 - B1_Mus2 SINE Alu -1 146 1 1 738 1259 91 43 11 chr11 20060562 20060750 -101783106 + B2_Mm2 SINE B2 1 194 -1 1 738 248 246 18 0 chr11 20060751 20060808 -101783048 + B4A SINE B4 87 144 -148 1 738 529 263 122 48 chr11 20060921 20061109 -101782747 + B4 SINE B4 53 254 -38 1 738 459 0 0 0 chr11 20061114 20061165 -101782691 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 738 1678 130 126 74 chr11 20061208 20061574 -101782282 + ORR1B1 LTR MaLR 3 387 -7 1 738 306 260 17 10 chr11 20061573 20061671 -101782185 + B1F SINE Alu 18 143 -6 1 738 940 33 0 0 chr11 20061684 20061805 -101782051 + B1_Mus1 SINE Alu 24 144 -4 1 738 189 0 0 0 chr11 20061805 20061826 -101782030 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1 738 1919 181 14 3 chr11 20061856 20062211 -101781645 - ORR1B2 LTR MaLR -8 359 1 1 738 728 149 22 15 chr11 20062211 20062347 -101781509 + B1F2 SINE Alu 12 148 -1 1 738 201 147 0 0 chr11 20062357 20062391 -101781465 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 738 830 54 9 0 chr11 20062432 20062544 -101781312 + (TTCCC)n Simple_repeat Simple_repeat 4 116 0 1 738 1280 93 0 37 chr11 20062777 20062967 -101780889 - B2_Mm2 SINE B2 -9 186 4 1 738 1815 216 12 12 chr11 20062967 20063366 -101780490 - RLTR12B LTR ERVK -7 521 123 1 738 1682 98 3 70 chr11 20063367 20063652 -101780204 + ORR1A2 LTR MaLR 22 287 -40 1 738 1066 90 14 0 chr11 20063653 20063798 -101780058 + B1_Mus1 SINE Alu 2 148 0 1 738 438 36 0 0 chr11 20063842 20063897 -101779959 + ORR1A2 LTR MaLR 272 326 0 1 738 714 153 0 15 chr11 20063897 20064023 -101779833 - RLTR12B LTR ERVK -402 126 3 1 738 228 200 12 167 chr11 20064187 20064271 -101779585 + RSINE1 SINE B4 94 164 -1 1 738 1354 116 0 0 chr11 20064615 20064804 -101779052 + B2_Mm2 SINE B2 2 190 -5 1 738 1875 146 36 178 chr11 20064965 20065466 -101778390 + RLTR23 LTR ERV1 1 430 0 1 738 222 37 0 0 chr11 20065487 20065514 -101778342 + (TTGG)n Simple_repeat Simple_repeat 4 30 0 1 738 751 168 92 0 chr11 20065514 20065645 -101778211 - B1_Mus1 SINE Alu -4 144 2 1 738 597 195 141 65 chr11 20065661 20065831 -101778025 + B3 SINE B2 34 216 0 2 738 338 274 58 20 chr11 20065963 20066090 -101777766 - B1F SINE Alu -15 134 1 2 738 186 371 27 34 chr11 20066273 20066421 -101777435 + L2a LINE L2 2707 2853 -566 2 738 1136 68 14 0 chr11 20066447 20066595 -101777261 + B1_Mur4 SINE Alu 1 150 0 2 738 198 343 43 21 chr11 20066660 20066800 -101777056 + L2a LINE L2 2950 3092 -334 2 738 447 288 29 0 chr11 20066810 20066949 -101776907 - ID_B1 SINE B4 0 224 82 2 738 24 53 0 0 chr11 20066990 20067028 -101776828 + AT_rich Low_complexity Low_complexity 1 38 0 2 738 380 245 43 0 chr11 20067035 20067129 -101776727 - B3 SINE B2 0 216 119 2 738 285 179 0 0 chr11 20067134 20067190 -101776666 + RMER17C-int LTR ERVK 3162 3217 -21 2 738 813 61 9 0 chr11 20067202 20067316 -101776540 - B1_Mm SINE Alu 0 147 33 2 738 255 59 0 0 chr11 20067320 20067354 -101776502 + RMER17C-int LTR ERVK 3205 3238 0 2 738 1688 147 135 6 chr11 20067354 20067717 -101776139 + RMER17C LTR ERVK 1 410 0 2 738 629 192 17 0 chr11 20067717 20067837 -101776019 - B3 SINE B2 -93 123 2 2 738 328 241 0 12 chr11 20067840 20067920 -101775936 - PB1 SINE Alu 0 127 49 2 738 645 298 25 10 chr11 20068101 20068301 -101775555 - ID_B1 SINE B4 -8 216 14 2 738 948 169 0 0 chr11 20068429 20068577 -101775279 + B1_Mur2 SINE Alu 1 148 -1 2 738 309 283 20 71 chr11 20068611 20068710 -101775146 - B1F2 SINE Alu -55 94 1 2 738 21 36 0 0 chr11 20068902 20068930 -101774926 + AT_rich Low_complexity Low_complexity 1 28 0 2 738 807 115 50 14 chr11 20068937 20069078 -101774778 - B1_Mus1 SINE Alu -2 146 1 2 738 466 253 246 6 chr11 20069301 20069484 -101774372 + Lx8 LINE L1 7242 7468 -5 2 738 201 254 0 35 chr11 20069626 20069683 -101774173 + GA-rich Low_complexity Low_complexity 1 55 0 2 738 1558 52 0 10 chr11 20069707 20069900 -101773956 - B2_Mm1a SINE B2 0 193 3 2 738 32 0 0 0 chr11 20070107 20070139 -101773717 + AT_rich Low_complexity Low_complexity 1 32 0 2 738 1201 55 7 0 chr11 20070181 20070327 -101773529 - B1_Mus1 SINE Alu 0 148 2 2 738 234 188 21 0 chr11 20070568 20070616 -101773240 + B3 SINE B2 48 96 -120 2 738 2285 186 67 40 chr11 20070621 20070964 -101772892 + RLTR20A LTR ERVK 1 346 -195 2 738 1451 55 16 0 chr11 20070964 20071147 -101772709 + B2_Mm2 SINE B2 3 188 -7 2 738 2285 186 67 40 chr11 20071147 20071239 -101772617 + RLTR20A LTR ERVK 347 450 -91 2 738 234 0 0 0 chr11 20071239 20071265 -101772591 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 738 2285 186 67 40 chr11 20071265 20071354 -101772502 + RLTR20A LTR ERVK 451 539 -2 2 738 526 212 42 17 chr11 20071354 20071465 -101772391 + B3 SINE B2 97 210 -6 2 738 1198 35 14 0 chr11 20071493 20071638 -101772218 + B1_Mus2 SINE Alu 1 147 0 2 738 180 111 0 0 chr11 20071638 20071665 -101772191 + (A)n Simple_repeat Simple_repeat 1 27 0 2 738 864 211 0 0 chr11 20071667 20071814 -101772042 + B1_Mur1 SINE Alu 2 148 -1 2 738 684 247 85 25 chr11 20071841 20072040 -101771816 + B3 SINE B2 3 213 -3 2 738 1489 166 145 9 chr11 20072572 20072889 -101770967 + ORR1B2 LTR MaLR 1 360 -7 2 738 450 292 148 65 chr11 20073665 20074002 -101769854 + MTEb LTR MaLR 7 371 -8 2 738 658 268 133 43 chr11 20074010 20074096 -101769760 + RMER17C LTR ERVK 1 108 -302 2 738 378 0 0 0 chr11 20074096 20074138 -101769718 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 738 441 0 0 0 chr11 20074138 20074186 -101769670 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 738 658 268 133 43 chr11 20074186 20074227 -101769629 + RMER17C LTR ERVK 109 142 -268 2 738 369 0 0 0 chr11 20074227 20074268 -101769588 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 738 658 268 133 43 chr11 20074268 20074485 -101769371 + RMER17C LTR ERVK 143 376 -34 2 738 3236 63 0 2 chr11 20074496 20074893 -101768963 - MTA_Mm LTR MaLR 0 396 1 2 738 1112 58 0 0 chr11 20074949 20075086 -101768770 - B1_Mus2 SINE Alu -10 137 1 2 738 1247 91 28 22 chr11 20075734 20075914 -101767942 - B2_Mm2 SINE B2 -14 181 1 2 738 465 236 3 37 chr11 20076072 20076192 -101767664 + PB1D10 SINE Alu 2 114 -3 2 738 827 92 122 0 chr11 20076401 20076532 -101767324 - B1_Mus1 SINE Alu -1 147 1 2 738 201 74 0 0 chr11 20076556 20076583 -101767273 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 738 359 162 206 29 chr11 20076775 20076877 -101766979 - PB1D9 SINE Alu 0 120 1 2 738 332 156 168 18 chr11 20077195 20077308 -101766548 - B2_Mm2 SINE B2 0 193 47 2 738 2995 89 38 17 chr11 20077362 20077783 -101766073 + L1_Mus3 LINE L1 6203 6632 -6 2 738 1039 127 6 0 chr11 20077801 20077959 -101765897 - B2_Mm1t SINE B2 -33 160 2 2 738 510 232 41 27 chr11 20078382 20078528 -101765328 + B1F SINE Alu 2 149 0 2 738 259 299 75 0 chr11 20078606 20078673 -101765183 + ID4_ SINE ID 3 74 -9 2 738 1316 112 16 0 chr11 20079451 20079639 -101764217 - B2_Mm2 SINE B2 -1 194 4 2 738 1135 75 0 7 chr11 20079673 20079820 -101764036 + B1_Mm SINE Alu 2 147 0 2 738 255 125 0 0 chr11 20080037 20080077 -101763779 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 738 609 231 150 5 chr11 20080116 20080316 -101763540 + RLTR19-int LTR ERVK 1567 1795 -3727 2 738 271 203 17 0 chr11 20080361 20080420 -101763436 + RLTR19-int LTR ERVK 1797 1856 -3666 2 738 1680 21 0 10 chr11 20080635 20080827 -101763029 + B2_Mm1a SINE B2 1 190 -3 2 738 716 227 0 17 chr11 20080973 20081148 -101762708 + RLTR19-int LTR ERVK 1890 2061 -3461 2 738 698 181 72 0 chr11 20081162 20081300 -101762556 - B1_Mur3 SINE Alu -1 148 1 2 738 244 0 56 0 chr11 20081512 20081548 -101762308 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 738 320 228 62 109 chr11 20081552 20081586 -101762270 + RLTR19-int LTR ERVK 3189 3216 -2921 2 738 3351 25 19 38 chr11 20081586 20082005 -101761851 + IAPLTR2a LTR ERVK 1 411 0 2 738 1009 229 73 80 chr11 20082005 20082496 -101761360 + RLTR19-int LTR ERVK 3217 3786 -2351 2 738 333 0 0 0 chr11 20082592 20082629 -101761227 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 738 288 0 0 0 chr11 20082760 20082792 -101761064 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 738 288 77 0 0 chr11 20082789 20082828 -101761028 + (GAA)n Simple_repeat Simple_repeat 3 41 0 2 738 792 184 4 82 chr11 20082829 20083096 -101760760 - RMER17C LTR ERVK -164 246 1 2 738 1509 144 32 65 chr11 20083169 20083510 -101760346 + RMER10B LTR ERVL 1 330 -68 2 738 194 23 22 65 chr11 20083536 20083582 -101760274 + (TTTTTG)n Simple_repeat Simple_repeat 6 49 0 2 738 1230 34 7 0 chr11 20083582 20083728 -101760128 - B1_Mm SINE Alu 0 147 1 2 738 251 298 39 69 chr11 20084212 20084443 -101759413 + RMER10B LTR ERVL 46 269 -129 2 738 2010 176 12 27 chr11 20084574 20084978 -101758878 + RMER10B LTR ERVL 1 398 0 2 738 1466 109 112 15 chr11 20084987 20085247 -101758609 + ORR1A4 LTR MaLR 1 285 -44 2 738 1559 52 0 15 chr11 20085249 20085444 -101758412 + B2_Mm1a SINE B2 1 192 -1 2 738 1023 80 0 0 chr11 20085481 20085619 -101758237 + B1_Mus1 SINE Alu 11 148 0 2 738 450 36 0 0 chr11 20085615 20085671 -101758185 + ORR1A4 LTR MaLR 274 329 0 2 738 958 141 0 6 chr11 20085697 20085875 -101757981 + ORR1A4-int LTR MaLR 1 177 -1786 2 738 353 132 32 115 chr11 20085875 20085979 -101757877 + B1_Mur2 SINE Alu 18 114 -35 2 738 2007 232 124 18 chr11 20086041 20086606 -101757250 + RMER1C Other Other 704 1328 -14 2 738 849 162 25 0 chr11 20086656 20086816 -101757040 - URR1B DNA MER1_type -4 221 58 2 738 268 280 0 13 chr11 20087725 20087801 -101756055 - PB1D7 SINE Alu 0 120 46 2 738 368 268 31 0 chr11 20087804 20087901 -101755955 + PB1D10 SINE Alu 11 110 -7 2 738 600 227 48 12 chr11 20088337 20088502 -101755354 + MER110A LTR ERV1 59 229 -239 2 738 366 23 0 0 chr11 20088592 20088635 -101755221 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 738 374 301 35 0 chr11 20088635 20088778 -101755078 - B1F SINE Alu -1 148 1 2 738 259 289 12 12 chr11 20088835 20088919 -101754937 + MER110A LTR ERV1 378 461 -7 2 738 798 17 24 24 chr11 20088982 20089105 -101754751 + (TTCTC)n Simple_repeat Simple_repeat 2 124 0 2 738 677 225 22 0 chr11 20089110 20089248 -101754608 - B1_Mur1 SINE Alu -8 141 1 2 738 339 150 0 0 chr11 20089305 20089365 -101754491 + (TCC)n Simple_repeat Simple_repeat 1 60 0 2 738 386 246 0 120 chr11 20089682 20089807 -101754049 + PB1D9 SINE Alu 11 120 0 2 738 782 162 7 22 chr11 20089843 20089982 -101753874 + B1_Mur3 SINE Alu 8 144 -5 2 738 484 285 8 0 chr11 20090012 20090139 -101753717 - ID_B1 SINE B4 -21 203 80 2 738 1314 45 6 10 chr11 20090277 20090589 -101753267 + (CA)n Simple_repeat Simple_repeat 1 310 0 2 738 26 30 0 0 chr11 20091025 20091058 -101752798 + AT_rich Low_complexity Low_complexity 1 33 0 2 738 293 178 0 76 chr11 20091080 20091159 -101752697 - B2_Mm2 SINE B2 -94 101 29 2 738 1347 74 11 11 chr11 20091189 20091366 -101752490 - B2_Mm1t SINE B2 -14 179 3 2 738 849 60 0 0 chr11 20091520 20091637 -101752219 + B1_Mus2 SINE Alu 31 147 0 2 738 35 0 0 0 chr11 20091637 20091672 -101752184 + AT_rich Low_complexity Low_complexity 1 35 0 2 738 287 253 55 21 chr11 20091672 20091769 -101752087 - ID2 SINE ID -45 107 2 2 738 213 196 58 19 chr11 20091789 20091841 -101752015 - B1F SINE Alu 0 149 96 2 738 1722 97 23 67 chr11 20091939 20092238 -101751618 + ORR1A4 LTR MaLR 2 287 -42 2 738 331 322 122 72 chr11 20092254 20092446 -101751410 - B4 SINE B4 0 292 92 2 738 3271 93 28 17 chr11 20092446 20092915 -101750941 - MT2C_Mm LTR ERVL -1 474 1 2 738 331 322 122 72 chr11 20092915 20093000 -101750856 - B4 SINE B4 -201 91 2 2 738 484 284 37 0 chr11 20093009 20093143 -101750713 - B1F1 SINE Alu -5 144 6 2 738 1199 41 0 0 chr11 20093759 20093905 -101749951 - B1_Mus2 SINE Alu -1 146 1 2 738 288 70 0 0 chr11 20094028 20094071 -101749785 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 738 1122 205 9 0 chr11 20094128 20094338 -101749518 - B3 SINE B2 -3 213 2 2 738 222 128 0 0 chr11 20094508 20094547 -101749309 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 738 545 176 39 0 chr11 20094635 20094737 -101749119 - U6 snRNA snRNA 0 107 2 2 738 286 226 58 151 chr11 20094737 20094909 -101748947 - ID_B1 SINE B4 -65 159 4 2 738 297 143 191 0 chr11 20095041 20095104 -101748752 + B3 SINE B2 1 75 -141 2 738 419 263 168 42 chr11 20095168 20095406 -101748450 - RMER21B LTR ERV1 -275 567 300 2 738 1249 62 102 0 chr11 20095490 20095666 -101748190 - B2_Mm2 SINE B2 0 195 2 3 738 338 233 56 43 chr11 20095667 20095808 -101748048 + B3A SINE B2 53 212 -4 2 738 2273 132 5 71 chr11 20095819 20096244 -101747612 + RMER10B LTR ERVL 1 397 -1 3 738 405 0 0 0 chr11 20096244 20096289 -101747567 + (TAG)n Simple_repeat Simple_repeat 2 46 0 3 738 456 289 64 26 chr11 20097754 20097910 -101745946 - RSINE1 SINE B4 -1 164 3 3 738 26 0 0 0 chr11 20097910 20097936 -101745920 + AT_rich Low_complexity Low_complexity 1 26 0 3 738 343 303 8 90 chr11 20097988 20098122 -101745734 - L1ME1 LINE L1 -73 6106 5984 3 738 443 238 96 37 chr11 20098277 20098412 -101745444 + ID_B1 SINE B4 82 224 0 3 738 282 329 94 0 chr11 20098541 20098690 -101745166 + RSINE1 SINE B4 3 165 0 3 738 1461 53 27 5 chr11 20098746 20098934 -101744922 - B2_Mm1a SINE B2 0 193 2 3 738 534 250 141 0 chr11 20099383 20099537 -101744319 + B3 SINE B2 2 164 -52 3 738 182 37 37 0 chr11 20099537 20099564 -101744292 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 738 534 250 141 0 chr11 20099564 20099593 -101744263 + B3 SINE B2 165 210 -6 3 738 681 192 69 0 chr11 20099613 20099743 -101744113 - B1_Mur2 SINE Alu -10 139 1 3 738 631 148 0 0 chr11 20099923 20100038 -101743818 + B1_Mus2 SINE Alu 33 147 0 3 738 189 0 0 0 chr11 20100567 20100588 -101743268 + (CAACC)n Simple_repeat Simple_repeat 1 21 0 3 738 23 0 0 0 chr11 20100810 20100833 -101743023 + AT_rich Low_complexity Low_complexity 1 23 0 3 738 234 176 0 0 chr11 20101572 20101623 -101742233 + (CGG)n Simple_repeat Simple_repeat 2 52 0 3 738 264 284 78 10 chr11 20103010 20103113 -101740743 - RSINE1 SINE B4 -2 163 54 3 738 1333 152 28 0 chr11 20103397 20103614 -101740242 - URR1A DNA MER1_type -3 223 1 3 738 552 261 8 0 chr11 20103625 20103744 -101740112 - B3A SINE B2 -77 121 2 3 738 313 302 217 0 chr11 20104174 20104280 -101739576 + RSINE1 SINE B4 2 130 -35 3 738 428 314 0 35 chr11 20104425 20104567 -101739289 - B1F SINE Alu -8 141 5 3 738 302 42 0 41 chr11 20104855 20104904 -101738952 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 738 1126 37 0 7 chr11 20104904 20105041 -101738815 - B1_Mm SINE Alu -11 136 1 3 738 396 250 26 53 chr11 20105220 20105334 -101738522 - RSINE1 SINE B4 -23 142 32 3 738 399 261 59 7 chr11 20105424 20105559 -101738297 + B1F2 SINE Alu 2 143 -6 3 738 534 198 27 0 chr11 20105650 20105761 -101738095 - ID_B1 SINE B4 -2 222 109 3 738 662 181 218 11 chr11 20105950 20106129 -101737727 - B3 SINE B2 0 216 1 3 738 266 255 0 0 chr11 20106196 20106247 -101737609 - RSINE1 SINE B4 -72 93 43 3 738 594 198 9 0 chr11 20106270 20106386 -101737470 + B1F SINE Alu 1 117 -32 3 738 25 0 0 0 chr11 20107277 20107302 -101736554 + AT_rich Low_complexity Low_complexity 1 25 0 3 738 542 235 184 23 chr11 20107305 20107479 -101736377 - B3 SINE B2 -11 205 4 3 738 219 36 0 0 chr11 20107502 20107530 -101736326 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 738 1530 47 26 0 chr11 20107840 20108030 -101735826 - B2_Mm2 SINE B2 0 195 1 3 738 308 250 92 0 chr11 20108655 20108731 -101735125 - B4A SINE B4 -108 184 102 3 738 637 211 110 22 chr11 20108780 20108916 -101734940 - B1_Mus1 SINE Alu 0 148 1 3 738 25 0 0 0 chr11 20108917 20108942 -101734914 + AT_rich Low_complexity Low_complexity 1 25 0 3 738 362 226 148 15 chr11 20108945 20109080 -101734776 - L1MC4a LINE L1 -181 7814 7662 3 738 283 239 135 120 chr11 20109084 20109217 -101734639 - B1F2 SINE Alu 0 149 15 3 738 1271 83 78 0 chr11 20109258 20109438 -101734418 - B2_Mm2 SINE B2 0 195 2 3 738 1016 129 0 0 chr11 20109453 20109600 -101734256 - B1_Mur4 SINE Alu -1 149 3 3 738 1105 48 0 46 chr11 20109640 20109793 -101734063 - B1_Mus1 SINE Alu -1 147 2 3 738 991 224 28 5 chr11 20109816 20110027 -101733829 - B3 SINE B2 0 216 1 3 738 438 234 145 102 chr11 20110042 20110228 -101733628 - B3A SINE B2 -4 194 1 3 738 569 287 39 24 chr11 20110229 20110436 -101733420 - ID_B1 SINE B4 -13 211 2 3 738 282 29 0 0 chr11 20110500 20110535 -101733321 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 738 1056 54 67 0 chr11 20110535 20110684 -101733172 - B2_Mm1a SINE B2 -33 160 2 3 738 953 211 49 0 chr11 20110724 20110928 -101732928 - B3 SINE B2 0 216 3 3 738 374 204 235 0 chr11 20110943 20111041 -101732815 - B1F2 SINE Alu -10 139 19 3 738 334 294 36 22 chr11 20111043 20111182 -101732674 - L1MC4a LINE L1 -382 7500 7360 3 738 343 294 42 0 chr11 20111437 20111556 -101732300 + ID_B1 SINE B4 96 219 -5 3 738 382 289 208 6 chr11 20111590 20111903 -101731953 - L1MC4a LINE L1 -598 7284 6909 3 738 489 237 17 17 chr11 20112028 20112148 -101731708 - PB1D7 SINE Alu 0 120 1 3 738 1177 115 33 6 chr11 20112331 20112514 -101731342 + B2_Mm2 SINE B2 2 189 -6 3 738 255 31 0 0 chr11 20112537 20112569 -101731287 + (A)n Simple_repeat Simple_repeat 1 32 0 3 738 222 372 11 34 chr11 20112705 20112723 -101731133 - ID SINE ID -136 88 2 3 738 234 362 0 28 chr11 20112723 20112794 -101731062 - ID4_ SINE ID -13 70 2 3 738 823 223 45 5 chr11 20112809 20113007 -101730849 - B3 SINE B2 -9 207 2 3 738 284 253 194 21 chr11 20113019 20113112 -101730744 - PB1D10 SINE Alu -1 116 8 3 738 534 265 59 22 chr11 20113056 20113191 -101730665 - ID_B1 SINE B4 -80 144 5 3 738 26 30 0 0 chr11 20113438 20113471 -101730385 + AT_rich Low_complexity Low_complexity 1 33 0 3 738 449 287 60 40 chr11 20114159 20114308 -101729548 + RSINE1 SINE B4 3 154 -11 3 738 448 281 40 24 chr11 20114325 20114449 -101729407 + B1_Mur2 SINE Alu 1 126 -23 3 738 228 299 22 44 chr11 20114579 20114670 -101729186 - B1_Mur1 SINE Alu -7 142 54 3 738 224 325 113 44 chr11 20114670 20114782 -101729074 - ID_B1 SINE B4 -7 217 1 3 738 670 207 130 0 chr11 20114898 20115067 -101728789 - B3 SINE B2 -13 203 13 3 738 310 282 44 35 chr11 20115173 20115287 -101728569 - PB1D10 SINE Alu 0 117 3 3 738 294 309 12 0 chr11 20115937 20116021 -101727835 + PB1D9 SINE Alu 1 85 -35 3 738 198 167 0 0 chr11 20116021 20116057 -101727799 + A-rich Low_complexity Low_complexity 1 36 0 3 738 25 0 0 0 chr11 20116375 20116400 -101727456 + AT_rich Low_complexity Low_complexity 1 25 0 3 738 1194 61 0 0 chr11 20116409 20116556 -101727300 + B1_Mus2 SINE Alu 1 147 0 3 738 975 118 62 50 chr11 20116561 20116740 -101727116 - B2_Mm2 SINE B2 -14 181 1 3 738 774 124 15 15 chr11 20116797 20116928 -101726928 + B1_Mur3 SINE Alu 10 140 -9 3 738 405 0 0 0 chr11 20116928 20116973 -101726883 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 738 324 248 147 0 chr11 20117039 20117148 -101726708 - RSINE1 SINE B4 -38 127 3 3 738 428 293 35 0 chr11 20117163 20117279 -101726577 - B1F1 SINE Alu -9 140 21 3 738 189 0 0 0 chr11 20117422 20117443 -101726413 + (A)n Simple_repeat Simple_repeat 1 21 0 3 738 645 269 12 36 chr11 20117448 20117614 -101726242 + RSINE1 SINE B4 4 165 0 3 738 821 159 43 7 chr11 20117618 20117757 -101726099 - B1_Mur1 SINE Alu -5 144 1 3 738 429 265 167 5 chr11 20117884 20118100 -101725756 + L1MB7 LINE L1 5915 6165 -19 3 738 2560 83 3 3 chr11 20118308 20118635 -101725221 - ORR1A2 LTR MaLR 0 327 1 3 738 221 299 14 29 chr11 20119096 20119165 -101724691 - ID4_ SINE ID -15 68 1 3 738 496 256 64 57 chr11 20119688 20119829 -101724027 + RSINE1 SINE B4 2 143 -22 3 738 268 161 280 0 chr11 20120096 20120189 -101723667 - B1_Mur4 SINE Alu 0 150 32 3 738 213 39 0 0 chr11 20120633 20120659 -101723197 + (T)n Simple_repeat Simple_repeat 1 26 0 3 738 1218 61 0 0 chr11 20120659 20120806 -101723050 - B1_Mus2 SINE Alu 0 147 1 3 738 581 243 52 7 chr11 20121140 20121293 -101722563 + B3 SINE B2 57 216 0 3 738 309 278 110 30 chr11 20121581 20121681 -101722175 + B4A SINE B4 185 292 0 3 738 468 0 0 0 chr11 20121729 20121781 -101722075 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 738 1642 31 0 25 chr11 20121927 20122124 -101721732 - B2_Mm1a SINE B2 0 193 2 3 738 606 259 0 28 chr11 20122180 20122323 -101721533 - B1_Mur2 SINE Alu -9 140 2 3 738 273 227 80 0 chr11 20122323 20122395 -101721461 - RSINE1 SINE B4 -45 120 43 3 738 674 282 37 68 chr11 20122433 20122623 -101721233 - B3A SINE B2 -11 184 1 3 738 347 147 59 0 chr11 20123243 20123311 -101720545 - B1F1 SINE Alu -8 141 70 3 738 339 226 116 21 chr11 20123518 20123613 -101720243 + PB1 SINE Alu 24 127 0 3 738 482 258 133 0 chr11 20123668 20123796 -101720060 - B1_Mus2 SINE Alu -1 146 2 3 738 565 190 25 17 chr11 20123989 20124107 -101719749 - PB1D9 SINE Alu -1 119 1 3 738 924 137 7 0 chr11 20125870 20126016 -101717840 - B1_Mus2 SINE Alu 0 147 1 3 738 548 171 25 8 chr11 20126029 20126147 -101717709 - B1_Mur1 SINE Alu -6 143 24 3 738 547 147 21 0 chr11 20126168 20126263 -101717593 - ID_B1 SINE B4 -6 218 122 3 738 335 260 45 103 chr11 20128169 20128231 -101715625 + ID_B1 SINE B4 35 221 -2 3 738 680 137 44 44 chr11 20128231 20128368 -101715488 + B1_Mur4 SINE Alu 14 150 0 3 738 216 97 0 0 chr11 20128486 20128517 -101715339 + (TTC)n Simple_repeat Simple_repeat 2 32 0 3 738 289 287 149 0 chr11 20128517 20128611 -101715245 - B1_Mur1 SINE Alu -27 122 15 4 738 277 253 122 31 chr11 20129598 20129696 -101714160 - PB1D10 SINE Alu -6 111 5 4 738 425 278 126 53 chr11 20130677 20130736 -101713120 - ID_B1 SINE B4 -16 208 144 4 738 1368 102 5 0 chr11 20130736 20130923 -101712933 - B2_Mm1t SINE B2 -5 188 1 4 738 425 278 126 53 chr11 20130923 20131053 -101712803 - ID_B1 SINE B4 -81 143 6 4 738 796 164 79 6 chr11 20131619 20131797 -101712059 - B2_Mm2 SINE B2 -3 192 2 4 738 1265 34 0 0 chr11 20131930 20132077 -101711779 + B1_Mm SINE Alu 1 147 0 4 738 252 0 0 0 chr11 20132077 20132105 -101711751 + (A)n Simple_repeat Simple_repeat 1 28 0 4 738 241 308 240 0 chr11 20132696 20132800 -101711056 + RSINE1 SINE B4 2 130 -35 4 738 249 109 0 0 chr11 20132811 20132857 -101710999 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 738 335 269 11 0 chr11 20133121 20133214 -101710642 + MER20 DNA MER1_type 126 219 0 4 738 640 195 35 0 chr11 20133568 20133681 -101710175 - B1_Mm SINE Alu -30 117 1 4 738 230 147 0 0 chr11 20133698 20133732 -101710124 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 4 738 774 150 7 15 chr11 20134305 20134440 -101709416 + B2_Mm2 SINE B2 1 134 -61 4 738 23 0 0 0 chr11 20134575 20134598 -101709258 + AT_rich Low_complexity Low_complexity 1 23 0 4 738 277 261 31 0 chr11 20134787 20134852 -101709004 + ID4_ SINE ID 1 67 -16 4 738 206 70 44 44 chr11 20134865 20134910 -101708946 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 4 738 567 272 65 20 chr11 20134927 20135126 -101708730 + B3 SINE B2 3 210 -6 4 738 327 307 161 30 chr11 20135163 20135331 -101708525 + B3A SINE B2 9 198 0 4 738 766 139 69 55 chr11 20135358 20135503 -101708353 + B1_Mur2 SINE Alu 3 149 0 4 738 272 201 69 59 chr11 20135662 20135758 -101708098 + B1F2 SINE Alu 4 99 -28 4 738 227 272 76 19 chr11 20135789 20135894 -101707962 + L1M LINE L1 5309 5419 -749 4 738 226 289 115 0 chr11 20136291 20136395 -101707461 - PB1D10 SINE Alu -1 116 1 4 738 655 239 14 0 chr11 20136700 20136842 -101707014 - B1_Mur2 SINE Alu -5 144 1 4 738 240 35 0 0 chr11 20137768 20137797 -101706059 + (T)n Simple_repeat Simple_repeat 1 29 0 4 738 941 24 8 0 chr11 20137797 20137920 -101705936 - B1_Mm SINE Alu 0 147 24 4 738 231 292 14 0 chr11 20138069 20138141 -101705715 + MER3 DNA MER1_type 1 73 -136 4 738 1198 35 14 0 chr11 20142279 20142424 -101701432 + B1_Mus2 SINE Alu 1 147 0 4 738 21 36 0 0 chr11 20142424 20142452 -101701404 + AT_rich Low_complexity Low_complexity 1 28 0 4 738 198 0 0 0 chr11 20142691 20142713 -101701143 + (A)n Simple_repeat Simple_repeat 1 22 0 4 738 695 281 35 34 chr11 20144205 20144482 -101699374 - RLTR18B LTR ERVK -47 569 186 4 738 403 312 135 13 chr11 20144557 20144794 -101699062 - RLTR18B LTR ERVK -239 273 8 4 738 279 282 64 8 chr11 20144790 20144915 -101698941 - 7SK RNA RNA -198 133 2 4 738 670 289 116 14 chr11 20145509 20145793 -101698063 - MTE2b LTR MaLR -65 314 2 4 738 1390 266 41 72 chr11 20145793 20145963 -101697893 - MTE2b-int LTR MaLR -18 1562 1414 4 738 1147 191 5 19 chr11 20145963 20146177 -101697679 + B3 SINE B2 1 211 -5 4 738 1390 266 41 72 chr11 20146177 20146545 -101697311 - MTE2b-int LTR MaLR -167 1413 1041 4 738 616 228 114 0 chr11 20147569 20147727 -101696129 - B3 SINE B2 -40 176 1 4 738 180 0 0 0 chr11 20148027 20148047 -101695809 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 4 738 210 171 0 0 chr11 20148079 20148120 -101695736 - B1_Mus2 SINE Alu -74 73 33 4 738 185 255 0 21 chr11 20148223 20148271 -101695585 - MIRm SINE MIR -118 158 112 4 738 30 27 0 0 chr11 20148783 20148820 -101695036 + AT_rich Low_complexity Low_complexity 1 37 0 4 738 362 308 37 22 chr11 20149985 20150121 -101693735 - B4A SINE B4 -79 213 76 4 738 396 0 0 0 chr11 20150129 20150173 -101693683 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 738 462 18 0 0 chr11 20150173 20150228 -101693628 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 738 3392 160 139 20 chr11 20150581 20151366 -101692490 - RMER21A LTR ERV1 -69 878 1 4 738 197 261 0 11 chr11 20151393 20151482 -101692374 + CT-rich Low_complexity Low_complexity 1 88 0 4 738 499 243 199 17 chr11 20151482 20151658 -101692198 - ID_B1 SINE B4 -7 217 10 4 738 23 0 0 0 chr11 20151974 20151997 -101691859 + AT_rich Low_complexity Low_complexity 1 23 0 4 738 233 29 0 0 chr11 20151997 20152031 -101691825 - B1_Mus2 SINE Alu -1 146 113 4 738 434 259 28 62 chr11 20152057 20152201 -101691655 - RSINE1 SINE B4 0 165 27 4 738 366 273 130 43 chr11 20153051 20153189 -101690667 - RSINE1 SINE B4 -3 162 13 4 738 352 231 99 26 chr11 20153381 20153506 -101690350 + MamGypLTR1b LTR Gypsy 50 171 -611 4 738 561 68 0 0 chr11 20153514 20153588 -101690268 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 4 738 986 214 89 61 chr11 20153603 20153916 -101689940 - MTEa LTR MaLR -53 326 5 4 738 684 270 89 85 chr11 20153922 20154193 -101689663 + B4 SINE B4 17 288 -4 4 738 399 250 10 20 chr11 20154245 20154343 -101689513 + B1F SINE Alu 12 108 -41 4 738 240 254 63 0 chr11 20154549 20154612 -101689244 + B4A SINE B4 76 142 -150 4 738 347 238 152 24 chr11 20154561 20154686 -101689170 + B1F SINE Alu 6 146 -3 4 738 885 189 53 10 chr11 20154772 20154973 -101688883 - MTD LTR MaLR -8 411 177 4 738 1425 212 178 8 chr11 20154990 20155630 -101688226 - MERVL-int LTR ERVL -3671 2090 1342 4 738 393 154 55 0 chr11 20155653 20155763 -101688093 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 738 717 163 7 58 chr11 20155799 20155814 -101688042 - B3 SINE B2 -86 130 121 4 738 3345 53 2 0 chr11 20155814 20156209 -101687647 - MTA_Mm LTR MaLR 0 396 1 4 738 8695 62 7 3 chr11 20156209 20157302 -101686554 - MTA_Mm-int LTR MaLR 0 1098 1 4 738 3414 28 8 0 chr11 20157302 20157695 -101686161 - MTA_Mm LTR MaLR 0 396 1 4 738 717 163 7 58 chr11 20157695 20157814 -101686042 - B3 SINE B2 -96 120 3 4 738 2061 302 57 74 chr11 20157818 20159043 -101684813 - MERVL-int LTR ERVL -4280 1205 2 4 738 276 182 29 29 chr11 20159043 20159102 -101684754 - Ricksha_c DNA MuDR -1143 905 847 4 738 332 77 19 0 chr11 20159129 20159181 -101684675 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 738 1177 75 0 0 chr11 20159193 20159339 -101684517 - B1_Mus1 SINE Alu 0 148 3 4 738 250 311 140 57 chr11 20159433 20159590 -101684266 - MT2A LTR ERVL -105 428 259 4 738 326 313 61 39 chr11 20159582 20159898 -101683958 - MT2A LTR ERVL -133 342 38 4 738 319 237 137 26 chr11 20159811 20159928 -101683928 - MTD LTR MaLR -244 135 6 4 738 316 220 0 17 chr11 20159928 20159988 -101683868 + RSINE1 SINE B4 63 121 -44 4 738 896 141 7 0 chr11 20160015 20160157 -101683699 - RMER16 LTR ERVK -1 532 390 4 738 387 0 0 0 chr11 20160169 20160212 -101683644 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 738 1103 89 0 0 chr11 20160213 20160371 -101683485 - B2_Mm2 SINE B2 -37 158 1 4 738 2355 76 13 3 chr11 20160371 20160727 -101683129 - RMER16 LTR ERVK -131 402 1 4 738 21 57 0 0 chr11 20160733 20160768 -101683088 + AT_rich Low_complexity Low_complexity 1 35 0 4 738 1746 232 46 113 chr11 20161059 20161416 -101682440 + RMER19C LTR ERVK 1 332 -279 4 738 3080 59 10 30 chr11 20161416 20161613 -101682243 + MTA_Mm LTR MaLR 1 193 -203 4 738 1132 63 7 7 chr11 20161613 20161757 -101682099 + B1_Mus2 SINE Alu 2 145 -2 4 738 252 0 0 0 chr11 20161757 20161785 -101682071 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 4 738 3080 59 10 30 chr11 20161785 20161990 -101681866 + MTA_Mm LTR MaLR 194 395 -1 4 738 1746 232 46 113 chr11 20161990 20162287 -101681569 + RMER19C LTR ERVK 333 611 0 4 738 1893 198 37 16 chr11 20162289 20162721 -101681135 + BGLII_B LTR ERVK 1 441 0 4 738 342 0 0 0 chr11 20163299 20163337 -101680519 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 738 246 297 34 8 chr11 20163345 20163464 -101680392 + L1MC4 LINE L1 6614 6735 -1307 4 738 9231 263 37 49 chr11 20163867 20166095 -101677761 + MYSERV6-int LTR ERVK 452 2684 -6275 4 738 1455 63 26 0 chr11 20166095 20166284 -101677572 + B2_Mm2 SINE B2 2 195 0 4 738 9231 263 37 49 chr11 20166284 20166939 -101676917 + MYSERV6-int LTR ERVK 2685 3300 -5659 4 738 3509 198 45 3 chr11 20166937 20167678 -101676178 + MYSERV6-int LTR ERVK 3497 4224 -4735 4 738 1243 94 56 0 chr11 20167678 20167858 -101675998 - B2_Mm2 SINE B2 -4 191 2 4 738 1415 279 78 38 chr11 20167858 20168370 -101675486 + MYSERV6-int LTR ERVK 4124 4626 -1924 4 738 728 161 13 87 chr11 20168421 20168571 -101675285 - RLTR14 LTR ERV1 -243 139 1 4 738 6022 155 151 71 chr11 20168620 20169121 -101674735 - RLTR14-int LTR ERV1 -109 5208 4650 4 738 1672 26 5 0 chr11 20169121 20169310 -101674546 - B2_Mm1t SINE B2 -3 190 1 4 738 6022 155 151 71 chr11 20169310 20170183 -101673673 - RLTR14-int LTR ERV1 -668 4649 3725 4 738 1825 157 96 161 chr11 20170190 20170668 -101673188 + RMER19C LTR ERVK 6 452 -159 4 738 3881 166 58 43 chr11 20170669 20171416 -101672440 - RLTR14-int LTR ERV1 -3257 2060 1303 4 738 4890 172 70 82 chr11 20171516 20171902 -101671954 - RLTR14-int LTR ERV1 -4033 1284 920 4 738 262 0 26 26 chr11 20171902 20171941 -101671915 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 4 738 4890 172 70 82 chr11 20171941 20172746 -101671110 - RLTR14-int LTR ERV1 -4398 919 108 4 738 892 190 125 66 chr11 20172751 20173039 -101670817 + RLTR20C LTR ERVK 1 305 -229 4 738 568 256 56 31 chr11 20173037 20173103 -101670753 + RLTR20C LTR ERVK 414 488 -90 4 738 414 0 0 0 chr11 20173103 20173149 -101670707 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 738 568 256 56 31 chr11 20173149 20173243 -101670613 + RLTR20C LTR ERVK 489 577 -1 4 738 362 214 37 84 chr11 20173248 20173355 -101670501 - RLTR14-int LTR ERV1 -5215 102 1 4 738 2047 172 0 9 chr11 20173376 20173716 -101670140 - RLTR14 LTR ERV1 -45 337 1 4 738 959 97 7 0 chr11 20173735 20173880 -101669976 + (TCTCC)n Simple_repeat Simple_repeat 1 146 0 4 738 282 320 0 35 chr11 20173897 20174004 -101669852 - B1_Mur3 SINE Alu -21 99 1 4 738 274 344 0 0 chr11 20173952 20174016 -101669840 - ID_B1 SINE B4 -91 133 70 4 738 1879 196 49 66 chr11 20174563 20174708 -101669148 - RLTR24 LTR ERV1 -109 420 278 4 738 279 0 0 0 chr11 20174708 20174739 -101669117 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 738 1879 196 49 66 chr11 20174739 20175020 -101668836 - RLTR24 LTR ERV1 -252 277 1 4 738 886 196 53 14 chr11 20175022 20175170 -101668686 - RCHARR1 DNA MER1_type -38 936 785 4 738 1303 96 27 0 chr11 20175170 20175357 -101668499 + B2_Mm2 SINE B2 4 195 0 4 738 886 196 53 14 chr11 20175357 20175415 -101668441 - RCHARR1 DNA MER1_type -190 784 722 4 738 546 204 58 23 chr11 20175490 20175613 -101668243 - B1_Mur2 SINE Alu -1 119 1 4 738 1027 303 77 18 chr11 20175615 20175941 -101667915 - RCHARR1 DNA MER1_type -629 345 1 4 738 253 246 0 0 chr11 20175946 20176003 -101667853 + B1F1 SINE Alu 1 57 -92 4 738 303 288 136 58 chr11 20175984 20176027 -101667829 + RLTR12B LTR ERVK 208 246 -282 4 738 487 0 16 16 chr11 20176027 20176091 -101667765 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 738 303 288 136 58 chr11 20176091 20176305 -101667551 + RLTR12B LTR ERVK 247 485 -43 4 738 738 83 71 0 chr11 20176435 20176603 -101667253 + CT-rich Low_complexity Low_complexity 1 180 0 4 738 441 0 0 0 chr11 20176604 20176653 -101667203 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 4 738 1202 62 0 0 chr11 20176660 20176806 -101667050 - B1_Mus1 SINE Alu -1 147 2 5 738 219 36 0 0 chr11 20176817 20176845 -101667011 + (T)n Simple_repeat Simple_repeat 1 28 0 5 738 1455 88 0 5 chr11 20177075 20177269 -101666587 - B2_Mm2 SINE B2 -2 193 1 5 738 278 258 229 53 chr11 20177409 20177426 -101666430 - B4A SINE B4 -52 240 87 5 738 617 254 0 0 chr11 20177426 20177540 -101666316 - PB1D10 SINE Alu -2 115 2 5 738 530 254 0 8 chr11 20177546 20177665 -101666191 - PB1D7 SINE Alu -2 118 1 5 738 414 0 0 0 chr11 20177768 20177814 -101666042 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 738 550 214 0 35 chr11 20177818 20177934 -101665922 - PB1D9 SINE Alu -8 112 1 5 738 991 146 0 0 chr11 20178117 20178261 -101665595 + B1_Mur4 SINE Alu 1 144 -6 5 738 515 208 23 11 chr11 20178333 20178508 -101665348 + (TATG)n Simple_repeat Simple_repeat 2 178 0 5 738 426 288 49 35 chr11 20178519 20178663 -101665193 - RSINE1 SINE B4 0 165 20 5 738 606 164 181 0 chr11 20179194 20179310 -101664546 + B1_Mus1 SINE Alu 4 140 -8 5 738 542 264 108 24 chr11 20179368 20179535 -101664321 - B3A SINE B2 0 198 18 5 738 522 271 5 57 chr11 20179641 20179833 -101664023 + B3A SINE B2 1 182 -16 5 738 678 279 58 22 chr11 20179957 20180181 -101663675 + B4 SINE B4 58 289 -3 5 738 216 0 0 0 chr11 20180181 20180205 -101663651 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 5 738 493 179 99 45 chr11 20180391 20180502 -101663354 - PB1D9 SINE Alu -2 118 2 5 738 1300 109 109 0 chr11 20180790 20180991 -101662865 + URR1B DNA MER1_type 1 223 -2 5 738 387 89 0 0 chr11 20181335 20181391 -101662465 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 738 609 302 76 4 chr11 20181480 20181674 -101662182 - B4A SINE B4 -76 216 2 5 738 729 199 210 0 chr11 20182902 20183088 -101660768 + URR1B DNA MER1_type 1 225 0 5 738 253 355 96 6 chr11 20183238 20183394 -101660462 + MER5B DNA MER1_type 9 178 0 5 738 845 157 35 7 chr11 20183690 20183831 -101660025 + B1_Mus2 SINE Alu 1 145 -2 5 738 281 304 54 0 chr11 20184110 20184202 -101659654 - MER5B DNA MER1_type -5 173 77 5 738 1123 256 75 81 chr11 20184237 20184407 -101659449 + ORR1E LTR MaLR 8 176 -183 5 738 627 14 0 0 chr11 20184407 20184479 -101659377 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 738 1123 256 75 81 chr11 20184479 20184656 -101659200 + ORR1E LTR MaLR 177 353 -6 5 738 679 289 124 48 chr11 20184664 20184995 -101658861 - MTEa LTR MaLR -23 356 1 5 738 197 242 152 0 chr11 20184995 20185061 -101658795 - MER5B DNA MER1_type -102 76 1 5 92 327 49 0 0 chr11 20185078 20185119 -101658737 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 739 468 0 0 0 chr11 20185119 20185170 -101658686 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 739 459 256 0 0 chr11 20185174 20185264 -101658592 + PB1D10 SINE Alu 25 114 -3 5 739 569 319 12 24 chr11 20185281 20185445 -101658411 + B3A SINE B2 10 171 -27 5 739 200 188 20 20 chr11 20185507 20185556 -101658300 + CT-rich Low_complexity Low_complexity 2 50 0 5 739 255 241 11 37 chr11 20185556 20185643 -101658213 - PB1D9 SINE Alu 0 120 36 5 739 243 254 47 16 chr11 20185822 20185886 -101657970 + RMER21A LTR ERV1 619 684 -263 5 739 607 208 53 23 chr11 20185902 20186035 -101657821 - B1_Mus2 SINE Alu -10 137 1 5 739 307 288 144 0 chr11 20185936 20186047 -101657809 - B4A SINE B4 -96 196 70 5 739 799 88 24 0 chr11 20186051 20186176 -101657680 + (TTCC)n Simple_repeat Simple_repeat 1 128 0 5 739 241 223 14 81 chr11 20186234 20186328 -101657528 - MIRm SINE MIR -136 132 48 5 739 2615 58 3 33 chr11 20186372 20186709 -101657147 - ORR1A2 LTR MaLR 0 327 1 5 739 22 0 0 0 chr11 20187008 20187030 -101656826 + AT_rich Low_complexity Low_complexity 1 22 0 5 739 796 193 0 21 chr11 20187044 20187187 -101656669 + B1_Mus1 SINE Alu 2 141 -7 5 739 312 175 0 17 chr11 20187202 20187260 -101656596 - ID_B1 SINE B4 0 224 168 5 739 283 226 36 108 chr11 20187260 20187324 -101656532 - PB1D7 SINE Alu 0 120 13 5 739 27 62 0 0 chr11 20188276 20188324 -101655532 + AT_rich Low_complexity Low_complexity 1 48 0 5 739 201 74 0 0 chr11 20188343 20188370 -101655486 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 739 308 241 309 10 chr11 20188378 20188427 -101655429 + L1M4 LINE L1 5351 5400 -778 5 739 922 198 130 16 chr11 20188427 20188674 -101655182 + B4A SINE B4 2 276 -16 5 739 308 241 309 10 chr11 20188674 20188825 -101655031 + L1M4 LINE L1 5401 5610 -568 5 739 1894 233 63 57 chr11 20188941 20189446 -101654410 + RMER15 LTR ERVL 22 529 -46 5 739 265 274 282 36 chr11 20189629 20189849 -101654007 - RLTR41 LTR ERV1 -60 386 113 5 739 1995 297 34 19 chr11 20190476 20191220 -101652636 - MuRRS4-int LTR ERV1 -3300 1763 1009 5 739 307 311 57 62 chr11 20191521 20191891 -101651965 - MuRRS4-int LTR ERV1 -3816 874 466 5 739 425 276 138 91 chr11 20192259 20192578 -101651278 - RLTR41 LTR ERV1 0 446 113 5 739 361 246 156 12 chr11 20192745 20192918 -101650938 + L1MB8 LINE L1 5981 6178 0 5 739 785 232 120 36 chr11 20192929 20193029 -101650827 + B3 SINE B2 1 116 -100 5 739 2950 72 47 0 chr11 20193029 20193431 -101650425 - BGLII LTR ERVK 0 421 1 5 739 785 232 120 36 chr11 20193431 20193522 -101650334 + B3 SINE B2 117 208 -8 5 739 411 363 0 0 chr11 20193536 20193649 -101650207 + PB1 SINE Alu 4 116 -11 5 739 299 302 228 0 chr11 20193762 20193924 -101649932 - ID_B1 SINE B4 -5 219 21 5 739 252 0 0 0 chr11 20194001 20194029 -101649827 + (T)n Simple_repeat Simple_repeat 1 28 0 5 739 261 234 62 15 chr11 20194142 20194207 -101649649 - MTEb LTR MaLR 0 379 312 5 739 583 261 0 7 chr11 20194207 20194350 -101649506 + B1F SINE Alu 1 142 -7 5 739 481 231 88 7 chr11 20194357 20194491 -101649365 + MTE2b LTR MaLR 10 178 -241 5 739 519 244 76 0 chr11 20194680 20194811 -101649045 + B1F SINE Alu 4 144 -5 5 739 720 161 17 0 chr11 20195072 20195190 -101648666 + B1_Mus1 SINE Alu 1 120 -28 5 739 186 43 0 0 chr11 20195195 20195218 -101648638 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 5 739 384 229 9 71 chr11 20195269 20195382 -101648474 + MER91C DNA Tip100 1 106 -34 5 739 273 109 0 0 chr11 20195890 20195936 -101647920 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 739 678 264 81 10 chr11 20195953 20196139 -101647717 - B3A SINE B2 -29 187 1 5 739 213 217 0 0 chr11 20196852 20196881 -101646975 + T-rich Low_complexity Low_complexity 18 46 0 5 739 2926 9 0 0 chr11 20196881 20197203 -101646653 - RLTRETN_Mm LTR ERVK 0 322 1 5 739 213 217 0 0 chr11 20197203 20197219 -101646637 + T-rich Low_complexity Low_complexity 2 17 0 5 739 1136 49 0 0 chr11 20197219 20197361 -101646495 - B1_Mus2 SINE Alu 0 147 6 5 739 803 200 7 52 chr11 20197363 20197516 -101646340 - B1_Mur1 SINE Alu -2 147 2 5 739 515 259 6 107 chr11 20197516 20197540 -101646316 - ID_B1 SINE B4 -2 222 64 5 739 297 290 0 0 chr11 20197561 20197630 -101646226 + RMER15 LTR ERVL 434 502 -73 5 739 225 0 0 0 chr11 20197630 20197655 -101646201 + (T)n Simple_repeat Simple_repeat 1 25 0 5 739 3726 28 7 9 chr11 20197743 20198182 -101645674 - L1Md_F3 LINE L1 0 6584 6147 5 739 232 233 64 64 chr11 20198182 20198260 -101645596 + RMER15 LTR ERVL 496 573 -2 5 739 1371 205 120 91 chr11 20198271 20198566 -101645290 + MTD LTR MaLR 1 315 -104 5 739 1162 75 7 0 chr11 20198566 20198713 -101645143 - B1_Mus1 SINE Alu 0 148 1 5 739 1371 205 120 91 chr11 20198713 20198824 -101645032 + MTD LTR MaLR 316 419 0 5 739 709 278 55 28 chr11 20198851 20199106 -101644750 + RMER15-int LTR ERVL 1508 1769 -3230 5 739 324 0 0 0 chr11 20199170 20199206 -101644650 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 739 531 253 57 57 chr11 20199546 20199739 -101644117 + RMER15-int LTR ERVL 2296 2488 -2511 5 739 2411 279 134 20 chr11 20199802 20200713 -101643143 + Lx8 LINE L1 6234 7248 -225 5 739 390 250 125 0 chr11 20200726 20200846 -101643010 + RMER15 LTR ERVL 425 559 -16 5 739 341 260 67 39 chr11 20201559 20201663 -101642193 + PB1D10 SINE Alu 11 117 0 5 739 541 309 76 19 chr11 20206764 20206975 -101636881 + MER2 DNA MER2_type 24 246 -99 5 739 701 301 147 22 chr11 20206986 20207299 -101636557 + ORR1E LTR MaLR 4 355 -4 5 739 1413 267 34 60 chr11 20207352 20207734 -101636122 + MTEa LTR MaLR 1 372 -7 5 739 388 295 67 0 chr11 20208933 20209038 -101634818 - PB1D10 SINE Alu -5 112 1 5 739 24 0 0 0 chr11 20209438 20209462 -101634394 + AT_rich Low_complexity Low_complexity 1 24 0 5 739 687 273 117 67 chr11 20209849 20210269 -101633587 - L1MB3 LINE L1 -28 6155 5715 5 739 331 198 93 0 chr11 20210286 20210372 -101633484 - PB1D10 SINE Alu -9 108 15 5 739 240 354 24 0 chr11 20211680 20211762 -101632094 - L1M5 LINE L1 -625 5615 5532 5 739 509 282 64 6 chr11 20212022 20212193 -101631663 + ID_B1 SINE B4 38 218 -6 5 739 908 150 7 26 chr11 20212487 20212638 -101631218 - B1_Mur3 SINE Alu -1 148 1 5 739 1894 186 65 15 chr11 20212715 20213114 -101630742 + MTD LTR MaLR 1 419 0 5 739 213 121 0 0 chr11 20213604 20213637 -101630219 + (CAT)n Simple_repeat Simple_repeat 1 33 0 5 739 423 262 163 8 chr11 20213668 20213791 -101630065 - RSINE1 SINE B4 -21 144 3 5 739 499 269 8 0 chr11 20214262 20214381 -101629475 + PB1D7 SINE Alu 1 120 0 5 739 481 165 134 0 chr11 20214616 20214713 -101629143 + B1_Mur4 SINE Alu 41 150 0 5 739 242 250 0 0 chr11 20214722 20214774 -101629082 + A-rich Low_complexity Low_complexity 1 52 0 5 739 426 294 90 43 chr11 20214964 20215152 -101628704 + B3A SINE B2 1 197 -1 5 739 284 336 41 129 chr11 20215336 20215507 -101628349 - RSINE1 SINE B4 -8 157 2 5 739 298 341 98 0 chr11 20216037 20216160 -101627696 + MIR SINE MIR 81 215 -47 5 739 320 268 39 125 chr11 20216189 20216317 -101627539 - PB1D10 SINE Alu 0 117 1 6 739 745 237 73 6 chr11 20216317 20216389 -101627467 - ID SINE ID -136 88 5 6 739 608 209 37 37 chr11 20217059 20217193 -101626663 - B1_Mur4 SINE Alu -1 149 16 6 739 419 299 24 50 chr11 20217071 20217234 -101626622 - ID_B1 SINE B4 -74 218 58 6 739 255 314 126 95 chr11 20217246 20217318 -101626538 + MER20B DNA MER1_type 339 409 -374 6 739 1028 243 5 0 chr11 20217318 20217520 -101626336 + B3 SINE B2 1 203 -13 6 739 1205 109 43 5 chr11 20217528 20217713 -101626143 + B2_Mm2 SINE B2 1 192 -3 6 739 255 314 126 95 chr11 20217713 20217821 -101626035 + MER20B DNA MER1_type 413 534 -249 6 739 463 250 56 0 chr11 20218001 20218109 -101625747 - PB1 SINE Alu -12 115 2 6 739 486 279 0 0 chr11 20218141 20218245 -101625611 - PB1D7 SINE Alu -7 113 10 6 739 217 304 206 43 chr11 20220418 20220469 -101623387 - RSINE1 SINE B4 0 165 2 6 739 472 163 56 44 chr11 20220469 20220559 -101623297 - B3A SINE B2 -107 91 1 6 739 338 305 0 0 chr11 20220589 20220671 -101623185 - PB1D10 SINE Alu -32 85 4 6 739 326 303 185 51 chr11 20220749 20221003 -101622853 + MER20B DNA MER1_type 112 399 -384 6 739 241 294 204 85 chr11 20221194 20221341 -101622515 - B4A SINE B4 0 292 128 6 739 303 28 0 0 chr11 20221341 20221377 -101622479 + (TCC)n Simple_repeat Simple_repeat 2 37 0 6 739 241 294 204 85 chr11 20221377 20221430 -101622426 - B4A SINE B4 -165 127 70 6 739 714 170 297 36 chr11 20221509 20221674 -101622182 + B3 SINE B2 3 210 -6 6 739 556 278 9 148 chr11 20221806 20221955 -101621901 + B4A SINE B4 1 216 -76 6 739 693 151 0 8 chr11 20221955 20222064 -101621792 + B1_Mur3 SINE Alu 30 138 -11 6 739 225 0 0 0 chr11 20222064 20222089 -101621767 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 6 739 556 278 9 148 chr11 20222099 20222168 -101621688 + B4A SINE B4 217 291 -1 6 739 396 0 0 0 chr11 20222168 20222212 -101621644 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 739 242 123 18 0 chr11 20222212 20222269 -101621587 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 739 501 196 33 0 chr11 20222348 20222440 -101621416 - PB1D9 SINE Alu 0 120 26 6 739 1511 204 72 14 chr11 20222601 20222950 -101620906 + MTE2b LTR MaLR 11 379 0 6 739 769 285 136 96 chr11 20223062 20223563 -101620293 + MLT1F2 LTR MaLR 40 560 0 6 739 443 298 238 6 chr11 20223824 20223996 -101619860 + ID_B1 SINE B4 2 213 -11 6 739 751 130 184 55 chr11 20224309 20224345 -101619511 + MTC LTR MaLR 5 33 -388 6 739 1002 148 104 38 chr11 20224345 20224556 -101619300 + URR1B DNA MER1_type 1 225 0 6 739 1004 169 127 26 chr11 20224556 20224850 -101619006 + MTC LTR MaLR 34 419 -2 6 739 207 0 0 0 chr11 20225159 20225182 -101618674 + (A)n Simple_repeat Simple_repeat 1 23 0 6 739 651 285 167 0 chr11 20225209 20225497 -101618359 + L1ME2 LINE L1 5579 5914 -250 6 739 566 226 0 14 chr11 20225533 20225564 -101618292 + polypurine Low_complexity Low_complexity 1 30 0 6 739 1227 41 0 13 chr11 20225564 20225713 -101618143 + B1_Mus2 SINE Alu 1 147 0 6 739 566 226 0 14 chr11 20225713 20225829 -101618027 + GA-rich Low_complexity Low_complexity 31 146 0 6 739 372 229 14 0 chr11 20225831 20225901 -101617955 + ID_B1 SINE B4 99 169 -55 6 739 365 276 46 0 chr11 20225901 20225918 -101617938 + PB1D10 SINE Alu 18 108 -9 6 739 344 336 39 39 chr11 20226247 20226301 -101617555 - MLT2B3 LTR ERVL -399 155 1 6 739 364 272 0 89 chr11 20226301 20226402 -101617454 - MTEa LTR MaLR -287 92 1 6 739 964 209 4 49 chr11 20227409 20227635 -101616221 - B3 SINE B2 0 216 1 6 739 342 0 0 0 chr11 20227701 20227739 -101616117 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 739 252 0 0 0 chr11 20227862 20227890 -101615966 + (T)n Simple_repeat Simple_repeat 1 28 0 6 739 528 95 99 26 chr11 20228021 20228173 -101615683 - RMER17A LTR ERVK -299 452 290 6 739 534 241 128 0 chr11 20228202 20228343 -101615513 - ID_B1 SINE B4 0 224 66 6 739 248 286 114 0 chr11 20229457 20229527 -101614329 + B1_Mur2 SINE Alu 59 136 -13 6 739 1114 87 0 0 chr11 20229568 20229706 -101614150 - B1_Mus1 SINE Alu -9 139 2 6 739 184 30 61 0 chr11 20230898 20230931 -101612925 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 6 739 233 279 103 11 chr11 20230972 20231059 -101612797 - MIRc SINE MIR -82 186 92 6 739 252 0 0 0 chr11 20231311 20231339 -101612517 + (A)n Simple_repeat Simple_repeat 1 28 0 6 739 234 0 0 0 chr11 20233623 20233649 -101610207 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 739 263 376 26 0 chr11 20234077 20234194 -101609662 + L2 LINE L2 2377 2496 -923 6 739 268 196 0 18 chr11 20234334 20234391 -101609465 - PB1D10 SINE Alu -14 103 48 6 739 2371 158 35 7 chr11 20234393 20234815 -101609041 + RLTR11A2 LTR ERVK 1 434 -93 6 739 189 0 0 0 chr11 20234815 20234836 -101609020 + (T)n Simple_repeat Simple_repeat 1 21 0 6 739 527 144 62 0 chr11 20236091 20236188 -101607668 + RLTR11A2 LTR ERVK 425 527 0 6 739 333 282 208 5 chr11 20236291 20236480 -101607376 - B4A SINE B4 -9 283 57 6 739 480 319 0 0 chr11 20236535 20236654 -101607202 - ID_B1 SINE B4 -1 223 105 6 739 265 100 0 0 chr11 20236661 20236701 -101607155 - B2_Mm2 SINE B2 -155 40 1 6 739 535 265 81 96 chr11 20236776 20237015 -101606841 + L1MA9 LINE L1 5460 5702 -598 6 739 447 271 116 20 chr11 20237015 20237162 -101606694 - RSINE1 SINE B4 0 165 5 6 739 535 265 81 96 chr11 20237162 20237244 -101606612 + L1MA9 LINE L1 5703 5776 -524 6 739 276 103 362 0 chr11 20237266 20237324 -101606532 + L1MA9 LINE L1 5851 5929 -383 6 739 605 192 6 136 chr11 20237678 20237847 -101606009 + B1F SINE Alu 1 147 -2 6 739 331 268 80 16 chr11 20237923 20238048 -101605808 + B1F SINE Alu 5 137 -12 6 739 599 87 10 0 chr11 20238282 20238386 -101605470 + (TC)n Simple_repeat Simple_repeat 2 106 0 6 739 682 251 7 27 chr11 20238616 20238780 -101605076 + ID_B1 SINE B4 78 239 -53 6 739 268 124 0 10 chr11 20238845 20238895 -101604961 + B3 SINE B2 1 47 -151 6 739 242 218 0 35 chr11 20239157 20239214 -101604642 + B3 SINE B2 162 216 0 6 739 624 321 88 41 chr11 20239219 20239560 -101604296 - Lx8 LINE L1 0 7473 7117 6 739 2888 156 104 40 chr11 20239672 20240221 -101603635 - RLTR31A_Mm LTR ERVK 0 584 1 6 739 842 118 19 0 chr11 20240560 20240698 -101603158 + B1_Mur3 SINE Alu 1 150 0 6 739 393 75 0 0 chr11 20240706 20240759 -101603097 + (CAA)n Simple_repeat Simple_repeat 1 53 0 6 739 329 341 76 23 chr11 20241100 20241271 -101602585 - LTR81C LTR ERV1? -36 1117 938 6 739 229 318 62 31 chr11 20241638 20241768 -101602088 + MTEb LTR MaLR 83 216 -143 6 739 962 231 6 0 chr11 20241868 20242037 -101601819 + B3A SINE B2 2 171 -27 6 739 231 278 27 14 chr11 20242102 20242175 -101601681 + MTEb LTR MaLR 306 379 0 6 739 279 361 36 12 chr11 20242180 20242264 -101601592 - LTR16B LTR ERVL -299 164 79 6 739 2129 174 175 33 chr11 20242345 20242826 -101601030 - RMER15 LTR ERVL 0 575 27 6 739 464 335 154 47 chr11 20242987 20243500 -101600356 - L2 LINE L2 -499 2920 2353 6 739 1766 234 57 71 chr11 20243501 20244077 -101599779 + RLTR20D LTR ERVK 1 568 0 6 739 405 320 32 8 chr11 20244226 20244349 -101599507 - MLT1I LTR MaLR -281 130 5 6 739 252 264 117 9 chr11 20244355 20244466 -101599390 - L2 LINE L2 -1064 2355 2233 6 739 406 271 165 39 chr11 20244676 20244930 -101598926 - B4A SINE B4 -2 290 5 6 739 1164 58 0 0 chr11 20245205 20245344 -101598512 + B1_Mus1 SINE Alu 2 140 -8 6 739 201 26 79 0 chr11 20245344 20245382 -101598474 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 739 3269 99 86 2 chr11 20245393 20245870 -101597986 + Lx2 LINE L1 6481 6997 0 6 739 1278 55 0 0 chr11 20246862 20247025 -101596831 + (TTC)n Simple_repeat Simple_repeat 1 163 0 6 739 426 0 0 0 chr11 20247025 20247076 -101596780 - B2_Mm1a SINE B2 -16 177 127 6 739 963 135 110 0 chr11 20247111 20247274 -101596582 - B2_Mm2 SINE B2 -14 181 1 6 739 444 62 0 0 chr11 20247332 20247396 -101596460 + (TTA)n Simple_repeat Simple_repeat 2 65 0 6 739 678 294 63 5 chr11 20248161 20248383 -101595473 + L1MC3 LINE L1 7278 7512 -273 6 739 259 278 20 10 chr11 20248395 20248493 -101595363 + L1MC3 LINE L1 7686 7784 -1 6 739 2138 107 3 10 chr11 20248675 20248986 -101594870 + ORR1A4 LTR MaLR 21 329 0 6 739 735 44 0 0 chr11 20249097 20249188 -101594668 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 739 342 0 0 0 chr11 20249188 20249226 -101594630 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 739 456 217 69 75 chr11 20249652 20249826 -101594030 - RLTR15 LTR ERVK 0 359 187 6 739 508 190 139 26 chr11 20249935 20250086 -101593770 - RLTR15 LTR ERVK -191 168 1 6 739 441 263 35 49 chr11 20250212 20250356 -101593500 + RSINE1 SINE B4 24 165 0 6 739 2646 51 0 0 chr11 20250366 20250677 -101593179 + RLTR10E LTR ERVK 1 311 0 6 739 931 211 345 70 chr11 20251250 20251693 -101592163 + RMER2 LTR ERV1 3 567 0 6 739 238 200 0 0 chr11 20251791 20251831 -101592025 - RSINE1 SINE B4 -123 42 3 6 739 699 182 164 0 chr11 20251890 20252049 -101591807 - B2_Mm2 SINE B2 -9 186 2 6 739 210 71 0 0 chr11 20252470 20252498 -101591358 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 6 739 205 260 20 0 chr11 20252665 20252715 -101591141 + MIR SINE MIR 209 259 -3 6 739 330 250 76 0 chr11 20252923 20253025 -101590831 - PB1D10 SINE Alu -11 138 15 6 739 362 293 0 0 chr11 20253062 20253137 -101590719 - PB1D10 SINE Alu -42 75 1 6 739 479 123 0 0 chr11 20253168 20253233 -101590623 + MT2B LTR ERVL 175 239 -362 6 739 403 225 94 2 chr11 20253233 20253250 -101590606 + B1_Mus1 SINE Alu 35 101 -19 6 739 326 69 167 33 chr11 20253849 20253909 -101589947 + B1_Mur3 SINE Alu 81 148 -1 6 739 823 251 114 22 chr11 20254160 20254388 -101589468 + MLT1D LTR MaLR 254 502 -3 6 739 232 159 0 22 chr11 20254889 20254934 -101588922 + ORR1E LTR MaLR 291 334 -25 7 739 508 346 201 37 chr11 20255079 20255287 -101588569 + MT2A LTR ERVL 2 241 -292 7 739 246 105 0 0 chr11 20255287 20255325 -101588531 + (ATG)n Simple_repeat Simple_repeat 3 40 0 7 739 508 355 39 30 chr11 20255325 20255513 -101588343 + MT2A LTR ERVL 242 434 -99 7 739 522 0 0 0 chr11 20255602 20255660 -101588196 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 739 382 333 29 0 chr11 20255900 20256002 -101587854 + PB1D10 SINE Alu 2 106 -11 7 739 338 321 65 7 chr11 20256002 20256033 -101587823 + ID_B1 SINE B4 83 223 -1 7 739 1272 157 117 21 chr11 20256154 20256560 -101587296 + RLTR20D LTR ERVK 67 568 0 7 739 1058 214 75 0 chr11 20256951 20257152 -101586704 + B3 SINE B2 1 216 0 7 739 793 279 35 31 chr11 20257214 20257473 -101586383 + B4A SINE B4 31 290 -2 7 739 578 319 128 33 chr11 20258229 20258836 -101585020 - ERVL-E-int LTR ERVL -4951 716 52 7 739 530 207 86 8 chr11 20259258 20259278 -101584578 - B1F1 SINE Alu -17 132 7 7 739 568 216 0 0 chr11 20259278 20259375 -101584481 - ID_B1 SINE B4 -40 184 88 7 739 320 243 33 83 chr11 20259285 20259406 -101584450 + YREP_Mm Unknown Unknown 222 336 -1476 7 739 313 294 39 10 chr11 20259411 20259514 -101584342 + B1F1 SINE Alu 1 106 -43 7 739 305 315 92 8 chr11 20259514 20259541 -101584315 + ID_B1 SINE B4 82 222 -2 7 739 540 111 0 0 chr11 20259696 20259777 -101584079 + (TCTCCC)n Simple_repeat Simple_repeat 5 85 0 7 739 353 253 205 0 chr11 20259929 20260119 -101583737 + L1MB3 LINE L1 5859 6087 -96 7 739 242 227 0 13 chr11 20260251 20260327 -101583529 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 739 940 226 13 62 chr11 20260381 20260607 -101583249 - B3 SINE B2 0 216 2 7 739 450 225 175 0 chr11 20260673 20260793 -101583063 - B1F1 SINE Alu -8 141 1 7 739 262 235 96 24 chr11 20260830 20260913 -101582943 + MLT1I LTR MaLR 24 112 -467 7 739 519 17 0 0 chr11 20261336 20261396 -101582460 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 739 1135 68 0 20 chr11 20261932 20262082 -101581774 - B1_Mm SINE Alu 0 147 1 7 739 495 176 39 3 chr11 20262460 20262566 -101581290 + B2_Mm2 SINE B2 2 111 -105 7 739 217 318 0 57 chr11 20262560 20262630 -101581226 + ID4_ SINE ID 14 79 -4 7 739 2066 169 83 3 chr11 20262641 20263027 -101580829 + MTD LTR MaLR 1 417 -2 7 739 488 342 36 61 chr11 20263279 20263320 -101580536 - RSINE1 SINE B4 0 165 133 7 739 444 37 0 0 chr11 20263320 20263374 -101580482 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 739 488 342 36 61 chr11 20263374 20263497 -101580359 - RSINE1 SINE B4 -33 132 6 7 739 279 153 32 48 chr11 20263543 20263605 -101580251 + B1F SINE Alu 12 72 -77 7 739 378 181 33 164 chr11 20263755 20263907 -101579949 - MLT2D LTR ERVL -8 552 421 7 739 333 315 229 4 chr11 20263921 20264170 -101579686 + MLT1I LTR MaLR 103 407 -4 7 739 189 0 0 0 chr11 20264255 20264276 -101579580 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 739 1093 207 20 0 chr11 20264293 20264491 -101579365 + B3 SINE B2 9 210 -6 7 739 236 299 35 0 chr11 20264826 20264913 -101578943 + L1MB3 LINE L1 6084 6173 -10 7 739 2833 143 25 12 chr11 20266493 20266976 -101576880 + RLTR28 LTR ERVL 36 524 0 7 739 616 296 25 128 chr11 20267064 20267385 -101576471 + B4A SINE B4 4 291 -1 7 739 279 226 129 0 chr11 20267419 20267481 -101576375 + B4A SINE B4 218 287 -5 7 739 258 116 0 0 chr11 20267500 20267543 -101576313 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 739 22 0 0 0 chr11 20268046 20268068 -101575788 + AT_rich Low_complexity Low_complexity 1 22 0 7 739 931 154 0 13 chr11 20268090 20268241 -101575615 + B1_Mur4 SINE Alu 2 150 0 7 739 430 250 12 0 chr11 20268298 20268382 -101575474 + PB1D10 SINE Alu 23 107 -10 7 739 1229 182 154 169 chr11 20269082 20269531 -101574325 + RLTR24 LTR ERV1 88 529 0 7 739 275 270 38 48 chr11 20269872 20269977 -101573879 - MER34 LTR ERV1 -65 477 374 7 739 255 125 0 0 chr11 20271728 20271768 -101572088 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 7 739 291 114 0 0 chr11 20271971 20272015 -101571841 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 7 739 293 267 141 20 chr11 20272596 20272745 -101571111 + MIR3 SINE MIR 1 167 -41 7 739 858 99 0 37 chr11 20273056 20273192 -101570664 - RMER19B LTR ERVK -79 823 693 7 739 181 178 42 62 chr11 20273237 20273285 -101570571 - MIRm SINE MIR -198 78 32 7 739 207 0 0 0 chr11 20273872 20273895 -101569961 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 739 856 143 53 0 chr11 20273895 20274028 -101569828 - B1_Mus1 SINE Alu -8 140 1 7 739 419 266 132 56 chr11 20274466 20274717 -101569139 - RMER20B LTR ERVK -114 402 131 7 739 351 0 0 0 chr11 20274830 20274869 -101568987 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 739 336 191 157 0 chr11 20275255 20275344 -101568512 - MLT1A1 LTR MaLR -1 407 305 7 739 261 0 0 0 chr11 20275438 20275467 -101568389 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 7 739 277 281 0 53 chr11 20276437 20276531 -101567325 + C-rich Low_complexity Low_complexity 3 91 0 7 739 416 228 9 56 chr11 20276532 20276639 -101567217 - PB1D7 SINE Alu -5 115 14 7 739 311 188 16 0 chr11 20276628 20276692 -101567164 - ID4_ SINE ID -16 67 3 7 739 3488 156 126 85 chr11 20276972 20277720 -101566136 - RMER19B LTR ERVK 0 902 149 7 739 886 193 162 133 chr11 20277720 20278102 -101565754 + RLTR9C LTR ERVK 1 393 0 7 739 3488 156 126 85 chr11 20278102 20278220 -101565636 - RMER19B LTR ERVK -754 148 2 7 739 652 270 68 64 chr11 20278220 20278403 -101565453 + RMER5 LTR ERV1 225 408 -126 7 739 812 153 13 53 chr11 20278513 20278665 -101565191 + B1_Mus1 SINE Alu 3 148 0 7 739 613 126 14 34 chr11 20278679 20279038 -101564818 + (CA)n Simple_repeat Simple_repeat 1 351 0 7 739 898 123 10 27 chr11 20279055 20279769 -101564087 + (CA)n Simple_repeat Simple_repeat 1 701 0 7 739 300 261 124 42 chr11 20279862 20280008 -101563848 - PB1D10 SINE Alu -1 148 2 7 739 512 235 17 0 chr11 20281515 20281630 -101562226 - MER20 DNA MER1_type -59 160 44 7 739 456 189 200 75 chr11 20282060 20282180 -101561676 - ID_B1 SINE B4 -7 217 83 7 739 200 132 0 26 chr11 20282807 20282846 -101561010 + A-rich Low_complexity Low_complexity 2 39 0 7 739 248 49 49 0 chr11 20283558 20283599 -101560257 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 739 545 243 7 54 chr11 20283676 20283824 -101560032 - B1F1 SINE Alu 0 149 9 7 739 281 340 11 119 chr11 20283682 20283859 -101559997 - B4 SINE B4 -69 223 66 7 739 348 277 45 48 chr11 20284878 20285101 -101558755 + RLTR4_MM-int LTR ERV1 3989 4172 -3429 7 739 370 320 53 58 chr11 20285596 20285958 -101557898 + RLTR14-int LTR ERV1 3112 3430 -1887 7 739 2549 335 44 58 chr11 20286257 20287728 -101556128 + RodERV21-int LTR ERV1 2911 4361 -630 7 739 562 28 28 0 chr11 20287744 20287816 -101556040 + BC1_Mm scRNA scRNA 3 76 -76 7 739 1574 260 26 21 chr11 20287846 20288270 -101555586 + RodERV21-int LTR ERV1 4368 4793 -198 7 739 242 306 45 45 chr11 20288326 20288415 -101555441 + RMER4B LTR ERVK 347 435 -150 7 739 228 279 29 0 chr11 20288611 20288679 -101555177 + CT-rich Low_complexity Low_complexity 5 74 0 7 739 22 0 0 0 chr11 20288697 20288719 -101555137 + AT_rich Low_complexity Low_complexity 1 22 0 7 739 1302 182 74 7 chr11 20288722 20288993 -101554863 - MYSERV16_I-int LTR ERVK -443 1883 1595 7 739 2414 115 26 80 chr11 20289020 20289435 -101554421 + RLTR9C LTR ERVK 1 393 0 7 739 4721 186 59 98 chr11 20289437 20290789 -101553067 + MMETn-int LTR ERVK 2 1301 -3543 7 739 743 119 8 33 chr11 20290808 20290930 -101552926 + MMETn-int LTR ERVK 2494 2612 -4794 7 739 681 152 18 56 chr11 20290903 20291129 -101552727 + MMETn-int LTR ERVK 2975 3134 -4272 7 739 1190 110 0 16 chr11 20291136 20291321 -101552535 + RLTR13D1 LTR ERVK 469 650 -156 7 739 4288 165 16 38 chr11 20291651 20293444 -101550412 + MMETn-int LTR ERVK 2356 4085 -3321 7 739 1103 202 38 67 chr11 20293413 20293617 -101550239 + MMETn-int LTR ERVK 6222 6336 -1070 7 739 4928 76 24 3 chr11 20293617 20294278 -101549578 - L1Md_F2 LINE L1 -1 6581 5907 7 739 1103 161 10 48 chr11 20294278 20294365 -101549491 + MMETn-int LTR ERVK 6337 6422 -984 7 739 408 123 0 88 chr11 20294586 20294666 -101549190 + MMETn-int LTR ERVK 7333 7405 -1 7 739 2505 107 24 79 chr11 20294667 20295083 -101548773 + RLTR9C LTR ERVK 1 393 0 7 739 585 176 65 76 chr11 20295083 20295267 -101548589 - RMER3D-int LTR ERVK -699 2143 1962 7 739 3125 56 19 28 chr11 20295298 20295723 -101548133 - BGLII LTR ERVK 0 421 1 7 739 327 228 42 34 chr11 20296691 20296809 -101547047 - MIRb SINE MIR -148 120 2 7 739 455 269 96 0 chr11 20296896 20297000 -101546856 + PB1 SINE Alu 12 125 -2 7 739 282 294 24 14 chr11 20297017 20297099 -101546757 + ID4_ SINE ID 8 90 -62 7 739 283 280 29 39 chr11 20297742 20297846 -101546010 - L1ME1 LINE L1 -29 6150 6048 7 739 1949 192 11 17 chr11 20297975 20298336 -101545520 - ORR1D1 LTR MaLR -11 363 5 7 739 864 149 8 0 chr11 20298869 20299003 -101544853 - B1_Mus1 SINE Alu -13 135 1 7 739 329 316 33 58 chr11 20299031 20299273 -101544583 - L1ME1 LINE L1 -389 5790 5555 7 739 301 146 109 0 chr11 20299408 20299463 -101544393 + ID4_ SINE ID 7 67 -16 7 739 298 274 23 100 chr11 20299711 20299841 -101544015 - PB1D9 SINE Alu 0 120 1 7 739 494 296 21 9 chr11 20299841 20299915 -101543941 - ID SINE ID -144 80 6 7 739 492 249 44 26 chr11 20299916 20300055 -101543801 - B1F SINE Alu -20 129 6 7 739 386 197 161 8 chr11 20300481 20300599 -101543257 + MER5A1 DNA MER1_type 24 159 -7 7 739 216 0 0 0 chr11 20300649 20300673 -101543183 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 7 739 288 292 192 0 chr11 20301841 20301961 -101541895 - MLT1F LTR MaLR -102 467 325 7 739 307 333 66 16 chr11 20302110 20302232 -101541624 - MLT1F LTR MaLR -420 128 1 7 739 1875 132 33 33 chr11 20302297 20302626 -101541230 - ORR1A4 LTR MaLR 0 329 1 7 739 304 290 107 77 chr11 20302712 20302759 -101541097 - L1MEe LINE L1 -4139 715 665 7 739 198 0 0 0 chr11 20302759 20302781 -101541075 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 739 304 290 107 77 chr11 20302781 20303032 -101540824 - L1MEe LINE L1 -4190 664 409 7 739 1056 204 48 10 chr11 20303041 20303249 -101540607 - B3 SINE B2 0 216 1 7 739 1284 257 93 10 chr11 20303404 20303789 -101540067 + MTD LTR MaLR 3 419 0 7 739 604 221 35 28 chr11 20303826 20303970 -101539886 - B1F SINE Alu 0 149 5 7 739 207 254 14 27 chr11 20304042 20304115 -101539741 + MIRb SINE MIR 128 199 -69 8 739 214 318 0 0 chr11 20304122 20304166 -101539690 + ID SINE ID 5 48 -176 8 739 377 255 39 10 chr11 20304215 20304318 -101539538 - RMER15 LTR ERVL -65 510 405 8 739 611 248 52 32 chr11 20304637 20304687 -101539169 + ID_B1 SINE B4 50 99 -125 8 739 2664 65 182 55 chr11 20304687 20305159 -101538697 + RLTR47_MM LTR ERV1 1 532 0 8 739 611 248 52 32 chr11 20305159 20305262 -101538594 + ID_B1 SINE B4 100 206 -18 8 739 810 47 0 0 chr11 20305343 20305450 -101538406 + (CA)n Simple_repeat Simple_repeat 1 107 0 8 739 349 360 58 45 chr11 20305571 20305795 -101538061 + MLT1I LTR MaLR 182 408 -3 8 739 401 248 192 0 chr11 20305845 20305970 -101537886 + B1F SINE Alu 1 149 0 8 739 466 243 99 0 chr11 20305860 20305971 -101537885 + ID_B1 SINE B4 102 223 -1 8 739 418 252 8 50 chr11 20306475 20306596 -101537260 - PB1D10 SINE Alu -1 116 1 8 739 3283 42 20 0 chr11 20307013 20307416 -101536440 + RLTR10A LTR ERVK 1 411 0 8 739 994 238 0 23 chr11 20307765 20307980 -101535876 - B3 SINE B2 -6 210 1 8 739 288 262 8 150 chr11 20308234 20308298 -101535558 - PB1D10 SINE Alu -34 115 64 8 739 1613 42 0 20 chr11 20308298 20308494 -101535362 + B2_Mm1t SINE B2 2 193 0 8 739 288 256 10 146 chr11 20308494 20308539 -101535317 - PB1D10 SINE Alu -49 68 24 8 739 1560 42 0 20 chr11 20308777 20308973 -101534883 - B2_Mm1a SINE B2 0 193 2 8 739 184 319 214 8 chr11 20309014 20309131 -101534725 - MIR SINE MIR -109 153 13 8 739 248 77 0 25 chr11 20309335 20309375 -101534481 + (CCCCG)n Simple_repeat Simple_repeat 1 39 0 8 739 219 316 0 62 chr11 20309495 20309576 -101534280 - ID4_ SINE ID -7 76 1 8 739 1913 162 44 25 chr11 20309912 20310279 -101533577 - ORR1D1 LTR MaLR 0 374 1 8 739 311 227 60 60 chr11 20310438 20310555 -101533301 - PB1D7 SINE Alu -3 117 1 8 739 233 302 80 144 chr11 20310809 20311010 -101532846 + B3A SINE B2 11 198 0 8 739 1318 117 225 18 chr11 20311034 20311301 -101532555 + ORR1A4 LTR MaLR 1 322 -7 8 739 3317 165 34 93 chr11 20311302 20311988 -101531868 + ORR1A4-int LTR MaLR 1 585 -1378 8 739 1725 132 48 55 chr11 20311988 20312277 -101531579 + MT2B LTR ERVL 1 287 -314 8 739 4964 126 29 16 chr11 20312236 20312543 -101531313 + ORR1A4-int LTR MaLR 718 1023 -940 8 739 1451 65 11 0 chr11 20312543 20312728 -101531128 - B2_Mm1a SINE B2 -5 188 2 8 739 4964 126 29 16 chr11 20312728 20313251 -101530605 + ORR1A4-int LTR MaLR 1024 1558 -405 8 739 556 178 246 69 chr11 20313420 20313669 -101530187 + RLTR21 LTR ERVK 1046 1257 -315 8 739 1229 43 0 0 chr11 20313669 20313810 -101530046 + B1_Mus2 SINE Alu 1 141 -6 8 739 211 38 94 0 chr11 20313811 20313864 -101529992 + (CAA)n Simple_repeat Simple_repeat 1 58 0 8 739 556 238 94 117 chr11 20313864 20313912 -101529944 + RLTR21 LTR ERVK 1258 1305 -267 8 739 395 258 32 21 chr11 20313958 20314053 -101529803 + PB1D10 SINE Alu 1 96 -21 8 739 338 107 18 0 chr11 20314053 20314109 -101529747 + (GGA)n Simple_repeat Simple_repeat 2 58 0 8 739 180 111 0 0 chr11 20314131 20314158 -101529698 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 8 739 285 116 23 0 chr11 20314276 20314319 -101529537 - RLTR25B LTR ERVK 0 1028 985 8 739 2655 82 128 33 chr11 20314319 20314773 -101529083 + RLTR47_MM LTR ERV1 1 497 -35 8 739 4589 124 88 22 chr11 20314791 20315210 -101528646 - RLTR25A LTR ERVK -61 1042 614 8 739 4870 51 3 0 chr11 20315210 20315795 -101528061 + LTRIS_Mus LTR ERV1 1 587 0 8 92 4589 132 98 37 chr11 20315795 20316303 -101527553 - RLTR25A LTR ERVK -490 613 1 8 740 1709 173 203 29 chr11 20316490 20316870 -101526986 + RLTR41 LTR ERV1 1 446 0 8 740 3195 101 52 64 chr11 20317209 20317727 -101526129 + RLTR1B LTR ERV1 1 512 0 8 740 194 282 0 0 chr11 20318143 20318182 -101525674 - L2b LINE L2 -216 3159 3121 8 740 481 220 23 76 chr11 20318771 20318943 -101524913 + RNLTR23 LTR ERVK 480 642 0 8 740 6851 287 65 61 chr11 20319112 20319234 -101524622 + RNERVK23-int LTR ERVK 170 282 -7935 8 740 828 100 0 0 chr11 20319234 20319354 -101524502 + (GAAA)n Simple_repeat Simple_repeat 2 121 0 8 740 6851 287 65 61 chr11 20319354 20321656 -101522200 + RNERVK23-int LTR ERVK 283 2622 -5595 8 740 3362 46 0 0 chr11 20321656 20322048 -101521808 + MTA_Mm LTR MaLR 1 392 -4 8 740 1279 18 171 0 chr11 20322048 20322212 -101521644 + B2_Mm1a SINE B2 2 193 0 8 740 6851 287 65 61 chr11 20322212 20322958 -101520898 + RNERVK23-int LTR ERVK 2623 3355 -4862 8 740 1286 102 11 0 chr11 20322958 20323135 -101520721 + B2_Mm1t SINE B2 1 179 -14 8 740 338 122 316 9 chr11 20323168 20323282 -101520574 + B2_Mm2 SINE B2 47 195 0 8 740 435 38 0 0 chr11 20323282 20323335 -101520521 + (GGAAA)n Simple_repeat Simple_repeat 4 56 0 8 740 15002 274 27 24 chr11 20323337 20324805 -101519051 + RNERVK23-int LTR ERVK 3345 4798 -3419 8 740 1262 34 0 0 chr11 20324805 20324951 -101518905 + B1_Mus2 SINE Alu 2 147 0 8 740 15002 274 27 24 chr11 20324951 20327935 -101515921 + RNERVK23-int LTR ERVK 4799 7814 -403 8 740 289 289 9 85 chr11 20328076 20328182 -101515674 + ETnERV2-int LTR ERVK 6750 6847 -559 8 740 448 181 16 149 chr11 20328661 20328849 -101515007 + RNLTR23 LTR ERVK 480 642 0 8 740 235 246 35 0 chr11 20329027 20329084 -101514772 + C-rich Low_complexity Low_complexity 1 59 0 8 740 1225 48 0 0 chr11 20329165 20329312 -101514544 + B1_Mm SINE Alu 1 147 0 8 740 608 184 47 16 chr11 20329335 20329462 -101514394 + B1_Mus1 SINE Alu 3 133 -15 8 740 375 23 0 0 chr11 20330076 20330120 -101513736 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 8 740 311 172 198 66 chr11 20330291 20330397 -101513459 - PB1D7 SINE Alu 0 120 1 8 740 331 292 52 17 chr11 20330932 20331047 -101512809 - Kanga1 DNA Tc2 -113 1632 1514 8 740 1368 164 23 85 chr11 20331547 20331854 -101512002 + RLTR25B LTR ERVK 1 288 -740 8 740 383 246 75 90 chr11 20332744 20332945 -101510911 + RMER17C-int LTR ERVK 395 592 -2646 8 740 893 268 63 51 chr11 20332837 20333168 -101510688 + RodERV21-int LTR ERV1 754 1088 -3903 8 740 184 280 105 13 chr11 20333423 20333499 -101510357 - L2 LINE L2 -1845 1574 1492 8 740 287 200 0 0 chr11 20333499 20333554 -101510302 + RodERV21-int LTR ERV1 1356 1410 -3581 8 740 4203 239 41 29 chr11 20333561 20334640 -101509216 + RodERV21-int LTR ERV1 1627 2718 -2273 8 740 532 318 25 40 chr11 20334752 20335152 -101508704 + RodERV21-int LTR ERV1 3586 3979 -3112 8 740 308 354 0 6 chr11 20335468 20335650 -101508206 + MER52-int LTR ERV1 3470 3650 -3951 8 740 5022 106 27 65 chr11 20335687 20336527 -101507329 + RMER17D2 LTR ERVK 2 809 0 8 740 323 308 47 47 chr11 20336852 20337087 -101506769 + MER52-int LTR ERV1 4870 5104 -1987 8 740 354 300 63 8 chr11 20337550 20337785 -101506071 + RodERV21-int LTR ERV1 5675 5772 -1319 8 740 1228 285 18 21 chr11 20338855 20339238 -101504618 + RodERV21-int LTR ERV1 4412 4793 -198 8 740 235 322 69 69 chr11 20339294 20339424 -101504432 + RMER4B LTR ERVK 347 476 -109 8 740 371 113 16 0 chr11 20339585 20339647 -101504209 + (TC)n Simple_repeat Simple_repeat 1 63 0 8 740 300 258 153 12 chr11 20339744 20339839 -101504017 + PB1D7 SINE Alu 13 119 -1 8 740 468 0 0 0 chr11 20340414 20340466 -101503390 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 740 181 238 112 160 chr11 20340903 20340916 -101502940 + L2c LINE L2 3255 3267 -120 8 740 224 30 30 0 chr11 20340916 20340949 -101502907 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 8 740 181 238 112 160 chr11 20340949 20341060 -101502796 + L2c LINE L2 3268 3373 -14 8 740 251 271 115 0 chr11 20341495 20341591 -101502265 + MIR SINE MIR 31 137 -125 8 740 1216 136 27 0 chr11 20341826 20342010 -101501846 - B2_Mm2 SINE B2 -6 189 1 8 740 417 20 0 0 chr11 20343002 20343052 -101500804 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 740 420 331 16 0 chr11 20343055 20343179 -101500677 - RSINE1 SINE B4 -38 127 2 8 740 206 154 26 0 chr11 20343215 20343254 -101500602 + (TATG)n Simple_repeat Simple_repeat 2 41 0 8 740 294 304 64 21 chr11 20343415 20343509 -101500347 - RMER10A LTR ERVL -27 415 318 8 740 379 319 0 42 chr11 20343604 20343679 -101500177 + HAL1-3A_ME LINE L1 1976 2047 -811 8 740 237 65 0 0 chr11 20343679 20343710 -101500146 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 740 379 319 0 42 chr11 20343710 20343752 -101500104 + HAL1-3A_ME LINE L1 2048 2088 -770 8 740 289 193 92 162 chr11 20343774 20343916 -101499940 - RMER10A LTR ERVL -282 160 29 8 740 429 283 14 68 chr11 20344659 20344807 -101499049 + Tigger7 DNA MER2_type 2273 2412 -79 8 740 2956 190 158 49 chr11 20344830 20345622 -101498234 - RMER21A LTR ERV1 -69 878 1 8 740 225 258 29 43 chr11 20345689 20345758 -101498098 - ID4_ SINE ID -13 70 3 8 740 1162 113 103 0 chr11 20346859 20347044 -101496812 - URR1B DNA MER1_type -20 205 2 8 740 921 280 122 34 chr11 20347044 20347265 -101496591 - Charlie1b DNA MER1_type -34 489 247 8 740 186 43 0 0 chr11 20347265 20347288 -101496568 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 740 921 280 122 34 chr11 20347288 20347461 -101496395 - Charlie1b DNA MER1_type -277 246 61 8 740 588 294 64 113 chr11 20347829 20348155 -101495701 - ORR1E LTR MaLR -32 327 18 8 740 1638 26 0 40 chr11 20348408 20348609 -101495247 + B2_Mm1a SINE B2 1 193 0 8 740 28 61 0 0 chr11 20348798 20348847 -101495009 + AT_rich Low_complexity Low_complexity 1 49 0 8 740 1815 232 83 28 chr11 20348907 20349023 -101494833 - RMER1C Other Other -1 1341 1223 8 740 297 0 0 0 chr11 20349023 20349056 -101494800 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 8 740 1815 232 83 28 chr11 20349056 20349556 -101494300 - RMER1C Other Other -120 1222 692 8 740 670 244 8 0 chr11 20349576 20349707 -101494149 - B1_Mur2 SINE Alu -17 132 1 8 740 1191 142 105 24 chr11 20349887 20350096 -101493760 - URR1A DNA MER1_type 0 226 1 8 740 21 0 0 0 chr11 20350710 20350731 -101493125 + GC_rich Low_complexity Low_complexity 1 21 0 8 740 527 212 121 161 chr11 20350878 20351056 -101492800 + RMER20B LTR ERVK 130 288 -339 8 740 1130 79 0 0 chr11 20351056 20351195 -101492661 + B1_Mus1 SINE Alu 1 139 -9 8 740 375 23 0 0 chr11 20351195 20351239 -101492617 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 740 527 212 121 161 chr11 20351239 20351357 -101492499 + RMER20B LTR ERVK 289 414 -213 8 740 2402 88 0 12 chr11 20351427 20351749 -101492107 + ORR1A3 LTR MaLR 1 318 -8 8 740 439 162 95 0 chr11 20352230 20352304 -101491552 + PB1 SINE Alu 27 107 -20 8 740 1580 43 5 0 chr11 20352405 20352593 -101491263 + B2_Mm1a SINE B2 1 189 -4 8 740 216 0 0 0 chr11 20352607 20352631 -101491225 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 8 740 2096 165 80 11 chr11 20352634 20353007 -101490849 - MTD LTR MaLR -20 399 1 8 740 559 296 193 55 chr11 20353741 20354156 -101489700 + MLT1H LTR MaLR 78 549 0 8 740 382 229 20 20 chr11 20354688 20354786 -101489070 + PB1 SINE Alu 15 112 -15 8 740 315 71 0 0 chr11 20354793 20354835 -101489021 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 8 740 520 161 129 0 chr11 20354920 20355013 -101488843 + B1_Mus1 SINE Alu 31 135 -13 8 740 780 132 70 0 chr11 20355596 20355725 -101488131 + B1_Mur3 SINE Alu 1 138 -11 9 740 301 250 0 0 chr11 20356711 20356775 -101487081 - ID4_ SINE ID -17 66 3 9 740 276 287 11 11 chr11 20356790 20356802 -101487054 + (TG)n Simple_repeat Simple_repeat 2 13 0 9 740 976 148 235 0 chr11 20356802 20356985 -101486871 + URR1A DNA MER1_type 1 226 0 9 740 276 287 11 11 chr11 20356985 20357060 -101486796 + (TG)n Simple_repeat Simple_repeat 2 77 0 9 740 695 246 207 0 chr11 20357122 20357354 -101486502 + MTE2b LTR MaLR 1 280 -99 9 740 491 265 182 0 chr11 20357402 20357572 -101486284 - B4A SINE B4 -85 207 7 9 740 254 298 12 23 chr11 20357666 20357752 -101486104 + B1F SINE Alu 2 86 -63 9 740 209 318 86 16 chr11 20357826 20357954 -101485902 - L2b LINE L2 -217 3158 3022 9 740 261 256 90 0 chr11 20358121 20358132 -101485724 + B1F SINE Alu 13 97 -52 9 740 318 254 15 0 chr11 20358132 20358199 -101485657 + ID_B1 SINE B4 108 175 -49 9 740 633 61 0 0 chr11 20358399 20358481 -101485375 + (TG)n Simple_repeat Simple_repeat 2 83 0 9 740 197 235 162 0 chr11 20359132 20359200 -101484656 + MIRc SINE MIR 63 141 -127 9 740 2250 99 12 50 chr11 20359318 20359658 -101484198 + ORR1A4 LTR MaLR 3 329 0 9 740 195 358 58 36 chr11 20360123 20360262 -101483594 - L2b LINE L2 -54 3321 3180 9 740 911 106 28 7 chr11 20361250 20361392 -101482464 - B1_Mur4 SINE Alu 0 150 6 9 740 301 267 40 0 chr11 20361413 20361488 -101482368 - ID4_ SINE ID -1 82 5 9 740 476 206 147 0 chr11 20361621 20361723 -101482133 + PB1D10 SINE Alu 1 117 0 9 740 559 168 290 0 chr11 20362026 20362133 -101481723 - B1_Mus2 SINE Alu -9 138 1 9 740 493 293 68 0 chr11 20362345 20362478 -101481378 + MTE2a LTR MaLR 9 150 -229 9 740 498 277 26 45 chr11 20362588 20362743 -101481113 + MTE2a LTR MaLR 166 317 -62 9 740 420 271 18 36 chr11 20362747 20362858 -101480998 - MTE2b LTR MaLR -162 217 109 9 740 238 260 67 27 chr11 20362939 20363014 -101480842 + ID4_ SINE ID 2 79 -4 9 740 183 80 0 0 chr11 20363041 20363066 -101480790 + (GGAGA)n Simple_repeat Simple_repeat 3 27 0 9 740 208 119 119 0 chr11 20363480 20363539 -101480317 + (CAGCC)n Simple_repeat Simple_repeat 5 70 0 9 740 259 280 53 0 chr11 20363584 20363659 -101480197 + MLT1F1 LTR MaLR 416 494 -75 9 740 490 238 67 0 chr11 20363680 20363785 -101480071 + PB1 SINE Alu 6 117 -10 9 740 1212 228 121 18 chr11 20364160 20364499 -101479357 - MTE2b LTR MaLR -5 374 1 9 740 597 194 88 8 chr11 20365512 20365637 -101478219 + B1_Mur2 SINE Alu 2 136 -13 9 740 446 146 12 0 chr11 20365670 20365752 -101478104 + GA-rich Low_complexity Low_complexity 2 84 0 9 740 252 0 0 0 chr11 20365840 20365868 -101477988 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 740 333 0 0 0 chr11 20365868 20365904 -101477952 + (GA)n Simple_repeat Simple_repeat 1 37 0 9 740 193 145 37 158 chr11 20365997 20366079 -101477777 + L3b LINE CR1 181 252 -230 9 740 317 336 8 93 chr11 20366645 20366672 -101477184 + ID_B1 SINE B4 74 144 -80 9 740 340 266 13 0 chr11 20366672 20366751 -101477105 + PB1D10 SINE Alu 9 88 -29 9 740 1685 184 75 29 chr11 20366751 20366915 -101476941 + ORR1C2 LTR MaLR 2 189 -195 9 740 317 336 8 93 chr11 20366751 20366763 -101477093 + ID_B1 SINE B4 145 181 -43 9 740 288 0 0 0 chr11 20366915 20366947 -101476909 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 740 1685 184 75 29 chr11 20366947 20367130 -101476726 + ORR1C2 LTR MaLR 190 364 -20 9 740 301 212 138 0 chr11 20367126 20367206 -101476650 + B1F1 SINE Alu 51 141 -8 9 740 359 197 0 0 chr11 20367150 20367211 -101476645 + ID_B1 SINE B4 161 221 -3 9 740 1204 222 93 17 chr11 20367304 20367648 -101476208 + ORR1D2 LTR MaLR 1 370 0 9 740 286 333 45 121 chr11 20368758 20369072 -101474784 + MLT1J LTR MaLR 155 444 -68 9 740 327 104 0 0 chr11 20369158 20369206 -101474650 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 9 740 360 296 68 0 chr11 20369215 20369303 -101474553 - ID_B1 SINE B4 -10 214 121 9 740 212 258 58 136 chr11 20369303 20369318 -101474538 - PB1 SINE Alu -9 118 24 9 740 234 0 0 0 chr11 20369828 20369854 -101474002 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 740 571 126 37 12 chr11 20369874 20370035 -101473821 + (TG)n Simple_repeat Simple_repeat 2 166 0 9 740 719 270 29 45 chr11 20370137 20370434 -101473422 + MTD LTR MaLR 1 325 -94 9 740 3426 119 79 13 chr11 20370610 20371165 -101472691 + RLTR17 LTR ERVK 101 692 0 9 740 22 80 0 0 chr11 20371964 20372014 -101471842 + AT_rich Low_complexity Low_complexity 1 50 0 9 740 226 277 77 0 chr11 20372171 20372236 -101471620 + ID4 SINE ID 3 72 -11 9 740 513 157 36 0 chr11 20372259 20372342 -101471514 + PB1D7 SINE Alu 25 110 -10 9 740 1188 208 9 0 chr11 20373046 20373258 -101470598 - B3 SINE B2 0 216 3 9 740 242 158 0 0 chr11 20373965 20374003 -101469853 + B3A SINE B2 5 42 -156 9 740 438 123 0 0 chr11 20374004 20374053 -101469803 + (TTC)n Simple_repeat Simple_repeat 1 49 0 9 740 1262 78 0 11 chr11 20374053 20374234 -101469622 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 9 740 438 123 0 0 chr11 20374234 20374257 -101469599 + (TTC)n Simple_repeat Simple_repeat 2 24 0 9 740 943 232 82 0 chr11 20374264 20374458 -101469398 - B3 SINE B2 -6 210 1 9 740 587 282 115 0 chr11 20374464 20374620 -101469236 + B3 SINE B2 37 210 -6 9 740 922 255 19 0 chr11 20374640 20374852 -101469004 - B3 SINE B2 0 216 1 9 740 22 35 0 0 chr11 20374852 20374881 -101468975 + AT_rich Low_complexity Low_complexity 1 29 0 9 740 1089 91 28 0 chr11 20374897 20375040 -101468816 + B1_Mus1 SINE Alu 2 148 0 9 740 252 0 0 0 chr11 20375040 20375068 -101468788 + (A)n Simple_repeat Simple_repeat 1 28 0 9 740 1108 69 25 25 chr11 20375080 20375243 -101468613 + B2_Mm2 SINE B2 32 194 -1 9 740 1979 204 66 33 chr11 20376053 20376479 -101467377 + RLTR41 LTR ERV1 1 440 -6 9 740 1040 203 10 30 chr11 20376712 20376915 -101466941 + B3 SINE B2 1 199 -17 9 740 194 0 0 37 chr11 20376916 20376943 -101466913 + (TTAAA)n Simple_repeat Simple_repeat 5 30 0 9 740 360 203 56 39 chr11 20376958 20377060 -101466796 + PB1D7 SINE Alu 15 120 0 9 740 299 211 70 0 chr11 20377058 20377073 -101466783 + ID SINE ID 63 81 -143 9 740 266 208 0 0 chr11 20377073 20377121 -101466735 + PB1D7 SINE Alu 1 48 -72 9 740 234 0 0 0 chr11 20377182 20377208 -101466648 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 9 740 213 65 0 0 chr11 20378452 20378483 -101465373 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 9 740 2211 253 56 34 chr11 20378487 20379170 -101464686 - Lx7 LINE L1 -276 7420 6723 9 740 2369 211 171 21 chr11 20379175 20380006 -101463850 - L1_Mur3 LINE L1 -3642 2238 1270 9 740 195 42 0 0 chr11 20380006 20380030 -101463826 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 9 740 1597 28 0 0 chr11 20380030 20380210 -101463646 - B2_Mm1a SINE B2 -12 181 2 9 740 2369 271 97 45 chr11 20380210 20380578 -101463278 - L1_Mur3 LINE L1 -6459 1269 886 9 740 1476 65 16 0 chr11 20380928 20381114 -101462742 + B2_Mm2 SINE B2 1 189 -6 9 740 344 22 22 0 chr11 20381116 20381161 -101462695 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 740 542 178 0 144 chr11 20381259 20381384 -101462472 - PB1D7 SINE Alu -1 119 13 9 740 1598 196 119 36 chr11 20381399 20381786 -101462070 - MTD LTR MaLR 0 419 1 9 740 1242 159 58 0 chr11 20381883 20382091 -101461765 + URR1B DNA MER1_type 1 220 -5 9 740 314 253 26 13 chr11 20382765 20382841 -101461015 - MER34A LTR ERV1 -6 581 505 9 740 367 333 106 84 chr11 20382975 20383250 -101460606 + B4 SINE B4 12 292 0 9 740 417 248 136 21 chr11 20383495 20383630 -101460226 - B1F SINE Alu -2 147 2 9 740 319 253 10 21 chr11 20383634 20383731 -101460125 - MER34A LTR ERV1 -185 386 291 9 740 262 262 0 0 chr11 20383814 20383875 -101459981 + GA-rich Low_complexity Low_complexity 3 63 0 9 740 213 39 0 0 chr11 20384154 20384180 -101459676 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 740 341 316 31 21 chr11 20384181 20384278 -101459578 - B1F1 SINE Alu -51 98 1 9 740 395 203 14 0 chr11 20384389 20384458 -101459398 - ID4 SINE ID -12 71 2 9 740 315 0 0 0 chr11 20384851 20384886 -101458970 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 740 588 267 31 57 chr11 20384901 20385060 -101458796 + RSINE1 SINE B4 11 165 0 9 740 356 275 6 0 chr11 20385090 20385261 -101458595 + (CA)n Simple_repeat Simple_repeat 2 173 0 9 740 559 301 7 20 chr11 20385782 20385928 -101457928 + RSINE1 SINE B4 3 146 -19 9 740 596 67 11 0 chr11 20385988 20386078 -101457778 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 740 421 273 120 8 chr11 20386429 20386562 -101457294 + B1F1 SINE Alu 2 149 0 9 740 512 253 1 53 chr11 20386729 20386862 -101456994 - PB1D7 SINE Alu -15 134 11 9 740 216 0 0 0 chr11 20387097 20387121 -101456735 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 9 740 183 205 0 25 chr11 20387334 20387374 -101456482 - L3 LINE CR1 -1731 2758 2720 9 740 870 306 58 51 chr11 20387728 20388178 -101455678 - RLTR16 LTR ERVK -177 515 1 9 740 1106 169 36 5 chr11 20388514 20388710 -101455146 - B3 SINE B2 -6 210 9 9 740 2201 204 76 8 chr11 20388814 20389288 -101454568 - RMER20A LTR ERVK 0 516 11 9 740 288 312 54 27 chr11 20389984 20390096 -101453760 - MLT1A0 LTR MaLR -250 115 1 9 740 684 310 131 36 chr11 20390237 20390658 -101453198 + MLT1C LTR MaLR 6 466 -1 9 740 432 276 40 79 chr11 20390704 20390830 -101453026 + ID_B1 SINE B4 4 124 -100 9 740 233 329 26 0 chr11 20391272 20391348 -101452508 + ID_B1 SINE B4 137 214 -10 9 740 21 57 0 0 chr11 20391579 20391614 -101452242 + AT_rich Low_complexity Low_complexity 1 35 0 1 740 290 259 1 53 chr11 20391833 20391930 -101451926 + B1F SINE Alu 1 89 -38 1 740 270 352 117 0 chr11 20392142 20392287 -101451569 - MLT1H1 LTR MaLR -29 526 365 1 740 3250 41 5 5 chr11 20392374 20392769 -101451087 - MTA_Mm LTR MaLR -1 395 1 1 740 522 301 25 20 chr11 20392867 20393064 -101450792 - MLT1D LTR MaLR 0 505 308 1 740 267 79 0 0 chr11 20393066 20393104 -101450752 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 1 740 1912 231 113 103 chr11 20393132 20393993 -101449863 + RMER12 LTR ERVK 1 1169 -235 1 740 252 312 12 72 chr11 20394187 20394270 -101449586 - MLT1D LTR MaLR -532 95 18 1 740 507 220 55 34 chr11 20394526 20394672 -101449184 - B1F1 SINE Alu 0 149 1 1 740 212 288 92 40 chr11 20394809 20394885 -101448971 - ID4_ SINE ID -2 81 2 1 740 1196 75 0 0 chr11 20395072 20395219 -101448637 + B1_Mus1 SINE Alu 2 148 0 1 740 636 217 0 0 chr11 20395220 20395363 -101448493 + GA-rich Low_complexity Low_complexity 3 145 0 1 740 1070 235 47 34 chr11 20395684 20396006 -101447850 + RLTR15 LTR ERVK 1 326 -33 1 740 270 243 0 119 chr11 20396113 20396197 -101447659 - ID4 SINE ID -6 77 4 1 740 692 196 68 0 chr11 20396277 20396410 -101447446 + B1_Mur2 SINE Alu 6 147 -2 1 740 291 265 47 35 chr11 20396435 20396521 -101447335 + MT2B LTR ERVL 153 239 -362 1 740 450 299 50 17 chr11 20396462 20396581 -101447275 + B1_Mur1 SINE Alu 26 148 -1 1 740 286 197 99 0 chr11 20396610 20396681 -101447175 + PB1 SINE Alu 47 124 -3 1 740 939 81 0 0 chr11 20396779 20396902 -101446954 + B1_Mm SINE Alu 25 147 0 1 740 226 294 59 0 chr11 20396887 20396955 -101446901 + PB1 SINE Alu 38 109 -18 1 740 373 221 0 104 chr11 20396912 20397008 -101446848 + ID_B1 SINE B4 137 222 -2 1 740 641 83 21 0 chr11 20397747 20397843 -101446013 + (GAAAA)n Simple_repeat Simple_repeat 4 101 0 1 740 33 0 0 0 chr11 20399115 20399148 -101444708 + AT_rich Low_complexity Low_complexity 1 33 0 1 740 339 295 0 114 chr11 20400318 20400467 -101443389 - RSINE1 SINE B4 0 165 34 1 740 254 270 100 0 chr11 20400728 20400828 -101443028 + LTR16D1 LTR ERVL 555 664 -11 1 740 918 203 96 0 chr11 20401527 20401714 -101442142 - B3 SINE B2 -11 205 1 1 740 459 207 184 46 chr11 20401725 20401877 -101441979 - B4A SINE B4 -118 174 2 1 740 330 26 0 0 chr11 20402328 20402367 -101441489 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 1 740 284 297 223 9 chr11 20402369 20402481 -101441375 + MLT1J LTR MaLR 91 226 -286 1 740 930 118 6 12 chr11 20402629 20402792 -101441064 + (TTCTC)n Simple_repeat Simple_repeat 5 166 0 1 740 528 16 0 0 chr11 20402792 20402852 -101441004 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 1 740 293 258 0 0 chr11 20403080 20403146 -101440710 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 740 549 296 0 0 chr11 20403228 20403353 -101440503 - B4 SINE B4 -155 137 13 1 740 339 308 47 0 chr11 20403362 20403469 -101440387 - PB1D7 SINE Alu -8 112 1 1 740 1137 69 7 0 chr11 20403591 20403736 -101440120 - B1_Mus2 SINE Alu 0 147 2 1 740 191 114 29 0 chr11 20403876 20403911 -101439945 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1 740 320 203 26 26 chr11 20403913 20403989 -101439867 - L1MEg LINE L1 -4145 1939 1864 1 740 562 337 32 65 chr11 20404240 20404519 -101439337 - B4A SINE B4 -2 290 21 1 740 228 67 0 0 chr11 20404534 20404564 -101439292 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 740 617 200 83 15 chr11 20404565 20404697 -101439159 - B1_Mur1 SINE Alu -8 141 1 1 740 180 125 0 0 chr11 20406014 20406046 -101437810 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 740 1852 116 81 53 chr11 20407166 20407486 -101436370 + ORR1A4 LTR MaLR 1 329 0 1 740 453 323 99 41 chr11 20407781 20408023 -101435833 + RMER15 LTR ERVL 315 570 -5 1 740 638 180 30 30 chr11 20408045 20408177 -101435679 + B1_Mur3 SINE Alu 2 133 -16 1 740 381 220 228 48 chr11 20408537 20408704 -101435152 + MLT1A0 LTR MaLR 1 197 -168 1 740 207 0 0 0 chr11 20408752 20408775 -101435081 + (T)n Simple_repeat Simple_repeat 1 23 0 1 740 1232 41 0 0 chr11 20408775 20408922 -101434934 - B1_Mus2 SINE Alu 0 147 1 1 740 412 277 175 0 chr11 20408924 20409101 -101434755 + L1_Mur3 LINE L1 4057 4264 -1616 1 740 2529 106 68 31 chr11 20409103 20409561 -101434295 - IAPLTR2_Mm LTR ERVK 0 475 1 1 740 6066 51 3 19 chr11 20409563 20410319 -101433537 - IAPEz-int LTR ERVK -2 6479 5736 1 740 2299 54 0 14 chr11 20410318 20410600 -101433256 - IAPEz-int LTR ERVK -4845 1636 1359 1 740 3781 58 26 18 chr11 20410600 20411091 -101432765 - IAPEz-int LTR ERVK -5819 662 168 1 740 225 273 0 0 chr11 20411091 20411135 -101432721 - RLTR27 LTR ERVK -34 275 232 1 740 294 81 0 0 chr11 20411135 20411172 -101432684 - IAPEz-int LTR ERVK -7400 181 145 1 740 234 267 0 0 chr11 20411172 20411217 -101432639 - RLTR27 LTR ERVK -34 275 231 1 740 285 83 0 0 chr11 20411217 20411253 -101432603 - IAPEz-int LTR ERVK -7401 180 145 1 740 247 244 0 0 chr11 20411253 20411298 -101432558 - RLTR27 LTR ERVK -34 275 231 1 740 619 115 16 124 chr11 20411298 20411427 -101432429 - IAPEz-int LTR ERVK -6358 123 9 1 740 2404 111 72 33 chr11 20411428 20411885 -101431971 - IAPLTR2_Mm LTR ERVK 0 475 1 1 740 381 296 99 31 chr11 20411907 20412130 -101431726 + L1_Mur3 LINE L1 4265 4502 -1378 1 740 294 325 0 0 chr11 20412219 20412302 -101431554 - ID4_ SINE ID 0 83 1 1 740 1071 210 208 83 chr11 20412302 20412342 -101431514 - MT2A LTR ERVL 0 533 491 1 740 198 87 43 21 chr11 20412342 20412389 -101431467 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 740 1071 210 208 83 chr11 20412389 20412820 -101431036 - MT2A LTR ERVL -43 490 3 1 740 1113 68 14 14 chr11 20412946 20413094 -101430762 + B1_Mus1 SINE Alu 1 148 0 1 740 27 0 0 0 chr11 20413668 20413695 -101430161 + AT_rich Low_complexity Low_complexity 1 27 0 1 740 254 314 19 0 chr11 20413837 20413942 -101429914 - PB1D9 SINE Alu -12 108 2 1 740 186 43 0 0 chr11 20415561 20415584 -101428272 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 1 740 1133 52 0 0 chr11 20415584 20415719 -101428137 - B1_Mus1 SINE Alu -11 137 3 1 740 372 22 0 0 chr11 20415799 20415844 -101428012 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 740 1041 213 15 0 chr11 20415850 20416047 -101427809 - B3 SINE B2 -16 200 1 1 740 3188 16 0 47 chr11 20416398 20416783 -101427073 + IAPLTR1_Mm LTR ERVK 1 367 0 1 740 27990 24 34 1 chr11 20416783 20419976 -101423880 + IAPEz-int LTR ERVK 8 3306 -3175 1 740 7353 34 2 6 chr11 20419953 20420809 -101423047 + IAPEz-int LTR ERVK 5629 6481 0 1 740 3188 16 0 47 chr11 20420809 20421194 -101422662 + IAPLTR1_Mm LTR ERVK 1 367 0 1 740 222 254 17 83 chr11 20421696 20421756 -101422100 - ID4 SINE ID -17 66 11 1 740 308 228 134 0 chr11 20421760 20421853 -101422003 - PB1D9 SINE Alu -5 115 11 1 740 2098 202 77 6 chr11 20421853 20422345 -101421511 - RLTR11A2 LTR ERVK 0 527 1 1 740 210 91 0 0 chr11 20422703 20422736 -101421120 + (A)n Simple_repeat Simple_repeat 1 33 0 1 740 411 75 0 15 chr11 20423477 20423545 -101420311 - B2_Mm1t SINE B2 0 193 127 1 740 1404 74 17 0 chr11 20423611 20423787 -101420069 - B2_Mm2 SINE B2 -14 181 3 1 740 1057 89 0 14 chr11 20423960 20424108 -101419748 - B1_Mm SINE Alu -1 146 1 1 740 773 80 18 0 chr11 20424108 20424221 -101419635 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1 740 500 265 78 7 chr11 20424274 20424432 -101419424 - MLT2B1 LTR ERVL 0 554 386 1 740 499 273 8 15 chr11 20424433 20424563 -101419293 - B1F2 SINE Alu -19 130 2 1 740 1958 92 85 3 chr11 20424658 20424953 -101418903 + ORR1A2 LTR MaLR 1 319 -8 1 740 252 0 0 0 chr11 20425160 20425188 -101418668 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 740 239 119 162 95 chr11 20425416 20425490 -101418366 - B1F1 SINE Alu -2 147 69 1 740 407 267 106 24 chr11 20425508 20425631 -101418225 + RSINE1 SINE B4 10 142 -23 1 740 1667 187 130 16 chr11 20425774 20426159 -101417697 + RMER13B LTR ERVK 480 908 0 1 740 484 247 19 93 chr11 20426159 20426314 -101417542 + B3A SINE B2 49 191 -7 1 740 891 143 43 0 chr11 20426410 20426550 -101417306 + B1_Mur2 SINE Alu 2 147 -2 1 740 817 159 27 27 chr11 20426670 20426819 -101417037 + B1_Mur2 SINE Alu 1 149 0 1 740 245 301 81 12 chr11 20426902 20426999 -101416857 + B1F SINE Alu 18 112 -5 1 740 236 288 0 63 chr11 20427167 20427230 -101416626 - MIR SINE MIR -64 144 86 1 740 622 168 91 17 chr11 20427318 20427455 -101416401 - B1_Mur1 SINE Alu -1 148 1 1 740 426 192 64 55 chr11 20427358 20427468 -101416388 - MT2B LTR ERVL -338 263 153 1 740 186 258 124 82 chr11 20427702 20427799 -101416057 - MIR SINE MIR -80 182 82 1 740 897 192 70 32 chr11 20428253 20428519 -101415337 + RMER4B LTR ERVK 51 442 -143 1 740 515 203 49 128 chr11 20428566 20428730 -101415126 + B4 SINE B4 70 220 -72 1 740 975 90 8 0 chr11 20428603 20428736 -101415120 + B1_Mus2 SINE Alu 14 147 0 1 740 232 290 29 0 chr11 20428769 20428838 -101415018 + ID SINE ID 12 82 -142 1 740 386 284 11 0 chr11 20429581 20429669 -101414187 - PB1D10 SINE Alu -28 89 1 1 740 933 164 7 0 chr11 20429891 20430037 -101413819 - B1_Mus1 SINE Alu 0 148 2 1 740 760 253 92 26 chr11 20430054 20430261 -101413595 - B3 SINE B2 -7 209 9 1 740 1147 82 0 0 chr11 20430411 20430558 -101413298 + B1_Mus1 SINE Alu 2 148 0 1 740 320 77 19 0 chr11 20430558 20430610 -101413246 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 1 740 916 255 14 0 chr11 20430636 20430844 -101413012 + B3 SINE B2 1 211 -5 1 740 244 375 93 65 chr11 20430875 20431123 -101412733 + B4 SINE B4 36 290 -2 1 740 403 225 8 91 chr11 20431163 20431295 -101412561 + BC1_Mm scRNA scRNA 2 122 -30 1 740 239 217 28 42 chr11 20431401 20431443 -101412413 + RLTR25A LTR ERVK 644 686 -417 1 740 182 37 37 0 chr11 20431443 20431470 -101412386 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 740 239 217 28 42 chr11 20431470 20431499 -101412357 + RLTR25A LTR ERVK 687 713 -390 1 740 279 0 0 0 chr11 20431848 20431879 -101411977 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 740 306 0 0 0 chr11 20431879 20431912 -101411944 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 740 805 200 36 8 chr11 20433805 20433947 -101409909 + B3 SINE B2 22 166 -50 1 740 366 61 0 0 chr11 20433947 20433996 -101409860 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 740 575 234 47 71 chr11 20433996 20434023 -101409833 + B2_Mm2 SINE B2 161 187 -8 1 740 261 307 10 93 chr11 20434265 20434362 -101409494 + B1F2 SINE Alu 17 105 -44 1 740 234 150 0 0 chr11 20434364 20434404 -101409452 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 740 990 167 0 0 chr11 20434410 20434590 -101409266 + GA-rich Low_complexity Low_complexity 1 180 0 1 740 513 170 259 0 chr11 20434633 20434745 -101409111 - B1_Mur4 SINE Alu -5 145 5 1 740 26 50 0 0 chr11 20434779 20434819 -101409037 + AT_rich Low_complexity Low_complexity 1 40 0 1 740 257 105 0 0 chr11 20434844 20434882 -101408974 - B2_Mm2 SINE B2 -94 101 64 1 740 1237 103 40 0 chr11 20434921 20435095 -101408761 - B2_Mm2 SINE B2 -13 182 2 1 740 276 248 84 19 chr11 20436550 20436657 -101407199 - L1ME3B LINE L1 -36 6204 6091 1 740 811 240 62 97 chr11 20436857 20437147 -101406709 - B4 SINE B4 -8 284 5 1 740 543 128 0 0 chr11 20437198 20437284 -101406572 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 1 740 499 275 7 78 chr11 20437292 20437434 -101406422 - RSINE1 SINE B4 0 165 34 1 740 275 257 133 13 chr11 20437475 20437550 -101406306 - PB1 SINE Alu -14 113 30 1 740 383 267 57 70 chr11 20437814 20437971 -101405885 + MT2B LTR ERVL 143 297 -304 1 740 654 129 40 120 chr11 20437849 20437999 -101405857 + B1_Mus1 SINE Alu 9 146 -2 1 740 373 279 185 16 chr11 20438057 20438246 -101405610 + ID_B1 SINE B4 2 222 -2 1 740 37 23 0 0 chr11 20438278 20438322 -101405534 + AT_rich Low_complexity Low_complexity 1 44 0 1 740 328 40 0 39 chr11 20439734 20439786 -101404070 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 740 549 0 0 0 chr11 20439893 20439954 -101403902 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 740 419 205 36 174 chr11 20440091 20440135 -101403721 + RMER15 LTR ERVL 34 67 -508 1 740 745 132 155 0 chr11 20440135 20440264 -101403592 + B1_Mur4 SINE Alu 1 149 -1 1 740 627 239 131 81 chr11 20440264 20440618 -101403238 + RMER15 LTR ERVL 68 575 0 1 740 558 0 0 0 chr11 20441053 20441115 -101402741 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 740 889 201 39 34 chr11 20441122 20441328 -101402528 + B3 SINE B2 5 211 -5 1 740 343 351 8 8 chr11 20441875 20442004 -101401852 + B1F1 SINE Alu 17 145 -4 1 740 468 0 0 0 chr11 20442644 20442696 -101401160 + (CCCCG)n Simple_repeat Simple_repeat 5 56 0 1 740 21 0 0 0 chr11 20443799 20443820 -101400036 + AT_rich Low_complexity Low_complexity 1 21 0 1 740 185 159 23 0 chr11 20443900 20443944 -101399912 + CT-rich Low_complexity Low_complexity 1 45 0 1 740 219 241 0 65 chr11 20445154 20445216 -101398640 + MIR SINE MIR 44 101 -161 1 740 616 274 115 68 chr11 20445366 20445644 -101398212 + B4A SINE B4 1 291 -1 1 740 234 0 0 0 chr11 20445767 20445793 -101398063 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 740 265 374 107 0 chr11 20445830 20445961 -101397895 + MIR SINE MIR 37 181 -81 1 740 267 324 0 14 chr11 20446094 20446163 -101397693 - ID4 SINE ID -15 68 1 1 740 636 262 0 14 chr11 20446283 20446426 -101397430 + B1F2 SINE Alu 1 141 -8 1 740 320 182 76 0 chr11 20446446 20446512 -101397344 + B4 SINE B4 13 83 -209 1 740 1252 86 0 6 chr11 20446512 20446687 -101397169 - B2_Mm2 SINE B2 -21 174 1 1 740 867 277 47 0 chr11 20446687 20446896 -101396960 + B4 SINE B4 70 288 -4 1 740 279 344 21 10 chr11 20446975 20447072 -101396784 + PB1D10 SINE Alu 15 112 -5 1 740 330 223 156 55 chr11 20447117 20447226 -101396630 - PB1D7 SINE Alu 0 120 1 1 741 249 146 146 0 chr11 20447535 20447583 -101396273 + B1_Mus1 SINE Alu 11 65 -83 1 741 359 352 0 8 chr11 20448550 20448673 -101395183 - B1F SINE Alu -27 122 1 1 741 507 209 12 4 chr11 20448694 20448814 -101395042 - B1_Mus1 SINE Alu 0 120 1 1 741 852 226 81 15 chr11 20448831 20449029 -101394827 + B3 SINE B2 2 212 -4 1 741 180 0 0 0 chr11 20449096 20449116 -101394740 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 741 673 197 26 9 chr11 20449142 20449319 -101394537 + B3 SINE B2 7 216 0 1 741 284 225 77 22 chr11 20449678 20449769 -101394087 - PB1D10 SINE Alu 0 117 22 1 741 600 110 14 1 chr11 20449798 20449911 -101393945 + B1_Mus1 SINE Alu 27 148 -1 1 741 371 287 107 0 chr11 20449935 20450057 -101393799 + ID_B1 SINE B4 84 218 -6 1 741 225 277 15 0 chr11 20450303 20450368 -101393488 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 1 741 258 222 380 0 chr11 20450440 20450548 -101393308 - B3A SINE B2 -47 151 3 1 741 186 276 0 0 chr11 20450827 20450885 -101392971 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 741 376 225 85 85 chr11 20451877 20452018 -101391838 - B1F SINE Alu -8 141 1 1 741 1123 225 9 0 chr11 20452075 20452288 -101391568 - B3 SINE B2 -1 215 1 1 741 28 0 0 0 chr11 20452773 20452801 -101391055 + AT_rich Low_complexity Low_complexity 1 28 0 1 741 275 241 35 46 chr11 20453775 20453862 -101389994 - BC1_Mm scRNA scRNA -51 101 16 1 741 665 271 0 20 chr11 20454237 20454384 -101389472 + ID_B1 SINE B4 71 214 -10 1 741 323 187 0 0 chr11 20454405 20454467 -101389389 + tRNA-Ala-GCA tRNA tRNA 5 66 -9 1 741 185 163 20 0 chr11 20454498 20454547 -101389309 + GA-rich Low_complexity Low_complexity 4 53 0 1 741 211 294 0 0 chr11 20454566 20454617 -101389239 + AluF_3 SINE Alu 148 198 -113 1 741 616 172 45 30 chr11 20454864 20454996 -101388860 - B1F SINE Alu -12 137 4 1 741 1148 190 29 0 chr11 20455373 20455578 -101388278 + B3 SINE B2 1 211 -5 1 741 365 291 115 16 chr11 20455694 20455886 -101387970 - B4A SINE B4 -81 211 1 1 741 231 36 0 0 chr11 20456041 20456069 -101387787 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 1 741 245 277 15 0 chr11 20456416 20456481 -101387375 + MER5B DNA MER1_type 97 162 -16 1 741 213 39 0 0 chr11 20456523 20456549 -101387307 + (TTTTC)n Simple_repeat Simple_repeat 1 26 0 1 741 373 163 78 11 chr11 20456549 20456647 -101387209 - B1_Mur1 SINE Alu 0 149 17 1 741 195 276 0 0 chr11 20457606 20457682 -101386174 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 741 442 218 14 63 chr11 20457684 20457826 -101386030 - B4A SINE B4 0 292 158 1 741 1265 27 7 0 chr11 20457889 20458035 -101385821 + B1_Mus1 SINE Alu 2 148 0 1 741 342 67 0 0 chr11 20459165 20459210 -101384646 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 741 455 112 12 48 chr11 20460159 20460243 -101383613 + B4A SINE B4 1 81 -211 1 741 341 302 98 11 chr11 20460266 20460440 -101383416 - B3 SINE B2 -7 209 21 1 741 411 260 21 45 chr11 20460444 20460592 -101383264 + B4 SINE B4 93 236 -56 1 741 619 248 0 47 chr11 20460803 20460858 -101382998 + ID SINE ID 27 74 -150 1 741 332 264 60 60 chr11 20460858 20460975 -101382881 + PB1D10 SINE Alu 1 117 0 1 741 484 48 0 0 chr11 20461882 20461945 -101381911 + B2_Mm2 SINE B2 1 63 -132 1 741 668 200 121 0 chr11 20462042 20462182 -101381674 - B3 SINE B2 0 216 60 1 741 336 48 0 0 chr11 20462226 20462268 -101381588 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 741 375 245 112 0 chr11 20462526 20462624 -101381232 + B1F1 SINE Alu 2 110 -39 1 741 292 307 29 38 chr11 20462628 20462733 -101381123 - ID_B1 SINE B4 -41 183 80 1 741 2117 147 22 8 chr11 20463446 20463804 -101380052 - ORR1B2 LTR MaLR -4 363 1 1 741 721 229 57 11 chr11 20463831 20464008 -101379848 - B3 SINE B2 0 216 32 1 741 1563 136 120 75 chr11 20464006 20464364 -101379492 + ORR1C2 LTR MaLR 11 384 0 1 741 595 109 378 0 chr11 20464617 20464773 -101379083 + URR1A DNA MER1_type 1 215 -11 1 741 692 250 23 18 chr11 20465366 20465537 -101378319 - B3A SINE B2 0 198 27 1 741 566 131 10 0 chr11 20465850 20465949 -101377907 + (GGA)n Simple_repeat Simple_repeat 1 100 0 1 741 235 311 58 10 chr11 20466058 20466162 -101377694 + L1M5 LINE L1 5074 5182 -964 1 741 462 202 31 41 chr11 20466743 20466841 -101377015 - PB1D9 SINE Alu -13 107 11 1 741 1484 240 143 20 chr11 20466851 20467411 -101376445 - Charlie1 DNA MER1_type -243 2538 1910 1 741 240 259 32 96 chr11 20467762 20467856 -101376000 - Charlie1 DNA MER1_type -2693 88 1 1 741 747 46 18 9 chr11 20468232 20468341 -101375515 + (TTCTC)n Simple_repeat Simple_repeat 2 111 0 1 741 475 141 13 0 chr11 20468341 20468419 -101375437 - B1_Mus2 SINE Alu -5 142 64 1 741 507 247 0 0 chr11 20468621 20468718 -101375138 - B1F SINE Alu -52 97 1 1 741 806 261 50 78 chr11 20468753 20469035 -101374821 + B4A SINE B4 1 274 -18 1 741 415 261 57 32 chr11 20469563 20469686 -101374170 - PB1 SINE Alu 0 127 2 1 741 223 273 38 57 chr11 20469753 20469858 -101373998 + MIRb SINE MIR 75 177 -91 1 741 357 258 56 0 chr11 20470373 20470462 -101373394 - ID_B1 SINE B4 -15 209 116 1 741 281 256 268 0 chr11 20470842 20470924 -101372932 + PB1D10 SINE Alu 6 109 -8 1 741 635 232 7 21 chr11 20470943 20471084 -101372772 + B1_Mur1 SINE Alu 2 140 -9 1 741 430 205 22 45 chr11 20471599 20471778 -101372078 + RMER17C LTR ERVK 97 271 -139 1 741 269 226 16 0 chr11 20472756 20472818 -101371038 - L1M5 LINE L1 -459 5665 5603 1 741 377 343 9 0 chr11 20473322 20473430 -101370426 + PB1D7 SINE Alu 12 120 0 1 741 344 290 103 61 chr11 20473708 20473873 -101369983 - MIRb SINE MIR -93 175 4 1 741 1467 195 31 169 chr11 20475297 20475742 -101368114 + ORR1C2 LTR MaLR 1 384 0 1 741 23 0 0 0 chr11 20475773 20475796 -101368060 + AT_rich Low_complexity Low_complexity 1 23 0 1 741 186 43 0 0 chr11 20476370 20476393 -101367463 + (T)n Simple_repeat Simple_repeat 1 23 0 1 741 288 0 0 0 chr11 20476801 20476833 -101367023 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 741 21 0 0 0 chr11 20477082 20477103 -101366753 + AT_rich Low_complexity Low_complexity 1 21 0 1 741 348 43 0 0 chr11 20477179 20477225 -101366631 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 741 193 331 80 31 chr11 20477314 20477476 -101366380 - L2 LINE L2 -923 2496 2327 1 741 328 322 38 32 chr11 20479033 20479190 -101364666 + MamRep137 DNA TcMar? 1 158 -286 1 741 229 89 44 0 chr11 20479450 20479495 -101364361 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 741 605 263 0 0 chr11 20479541 20479659 -101364197 - ID_B1 SINE B4 -23 201 84 1 741 289 282 18 30 chr11 20479732 20479832 -101364024 + B1_Mus1 SINE Alu 8 119 -30 1 741 467 259 88 53 chr11 20479832 20479959 -101363897 + MTEa LTR MaLR 1 125 -254 1 741 252 0 0 0 chr11 20479959 20479987 -101363869 + (TGGG)n Simple_repeat Simple_repeat 2 29 0 1 741 467 259 88 53 chr11 20479987 20480030 -101363826 + MTEa LTR MaLR 126 176 -203 1 741 232 198 425 0 chr11 20480045 20480151 -101363705 + MTEa LTR MaLR 229 379 0 1 741 297 0 0 0 chr11 20481271 20481304 -101362552 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 741 216 0 0 0 chr11 20481305 20481329 -101362527 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 741 362 74 0 18 chr11 20482011 20482066 -101361790 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 1 741 298 298 151 16 chr11 20482146 20482272 -101361584 + RSINE1 SINE B4 8 150 -15 1 741 791 266 50 0 chr11 20482848 20483047 -101360809 + B3 SINE B2 8 216 0 1 741 1170 82 0 0 chr11 20483063 20483209 -101360647 + B1_Mm SINE Alu 2 147 0 1 741 380 310 30 15 chr11 20483722 20483853 -101360003 - MLT1K LTR MaLR -338 257 125 1 741 404 200 12 0 chr11 20484214 20484299 -101359557 + 4.5SRNA scRNA scRNA 1 86 -8 1 741 187 245 94 0 chr11 20486939 20486992 -101356864 + MIR SINE MIR 31 88 -174 1 741 1168 85 6 11 chr11 20487037 20487216 -101356640 + B2_Mm2 SINE B2 9 186 -9 1 741 195 324 0 39 chr11 20487219 20487296 -101356560 + MIR SINE MIR 119 192 -70 1 741 253 365 56 20 chr11 20487647 20487843 -101356013 - MIR SINE MIR -26 236 34 1 741 524 226 63 42 chr11 20487980 20488123 -101355733 + B1_Mur1 SINE Alu 1 146 -3 1 741 222 59 0 89 chr11 20488125 20488181 -101355675 + (CAAAAA)n Simple_repeat Simple_repeat 5 55 0 1 741 516 226 95 14 chr11 20488398 20488546 -101355310 + B3A SINE B2 39 198 0 1 741 363 243 50 83 chr11 20488615 20488736 -101355120 - RSINE1 SINE B4 -47 118 2 1 741 943 224 60 50 chr11 20489152 20489453 -101354403 - MER68 LTR ERVL -8 555 252 1 741 530 247 99 12 chr11 20489507 20489679 -101354177 + MER20 DNA MER1_type 33 219 0 1 741 261 0 0 0 chr11 20490090 20490119 -101353737 + (T)n Simple_repeat Simple_repeat 1 29 0 1 741 1225 54 0 0 chr11 20490119 20490266 -101353590 - B1_Mm SINE Alu 0 147 1 1 741 1095 90 139 0 chr11 20490272 20490438 -101353418 - B2_Mm1t SINE B2 -4 189 1 1 741 280 261 91 0 chr11 20490454 20490544 -101353312 - B1_Mur4 SINE Alu -50 100 3 1 741 284 245 62 31 chr11 20490609 20490706 -101353150 - Lx8 LINE L1 -386 7087 6988 1 741 463 258 17 0 chr11 20490850 20490970 -101352886 - Lx8 LINE L1 -705 6768 6647 1 741 1563 57 16 0 chr11 20491604 20491796 -101352060 + B2_Mm2 SINE B2 1 195 0 1 741 551 269 91 20 chr11 20491813 20492064 -101351792 + L1MEf LINE L1 1588 1851 -4549 1 741 520 269 56 37 chr11 20492094 20492256 -101351600 + B3A SINE B2 1 165 -33 1 741 596 60 0 23 chr11 20492277 20492363 -101351493 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 1 741 24 32 0 0 chr11 20492400 20492431 -101351425 + AT_rich Low_complexity Low_complexity 1 31 0 1 741 318 298 68 47 chr11 20492723 20492871 -101350985 + L1MEf LINE L1 2431 2581 -3738 1 741 2441 238 16 23 chr11 20492897 20493452 -101350404 + Lx5 LINE L1 6485 7035 -15 1 741 205 264 0 0 chr11 20493465 20493518 -101350338 + GA-rich Low_complexity Low_complexity 1 53 0 1 741 451 249 110 28 chr11 20493612 20493794 -101350062 + B3A SINE B2 2 198 0 1 741 252 0 0 0 chr11 20494017 20494045 -101349811 + (T)n Simple_repeat Simple_repeat 1 28 0 1 741 192 40 0 0 chr11 20494928 20494953 -101348903 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 741 21 0 0 0 chr11 20495408 20495429 -101348427 + AT_rich Low_complexity Low_complexity 1 21 0 1 741 400 210 314 12 chr11 20495660 20495829 -101348027 - Lx8 LINE L1 -325 7148 6929 1 741 7023 37 0 0 chr11 20495860 20496680 -101347176 - L1Md_T LINE L1 0 6582 5763 1 741 11264 62 0 0 chr11 20496680 20498131 -101345725 + L1_Mm LINE L1 1910 3360 -2523 1 741 1198 243 148 6 chr11 20498130 20498494 -101345362 - Lx8 LINE L1 -548 6925 6510 1 741 324 304 0 0 chr11 20498533 20498612 -101345244 - PB1D10 SINE Alu -2 115 37 1 741 26 0 0 0 chr11 20498649 20498675 -101345181 + AT_rich Low_complexity Low_complexity 1 26 0 1 741 232 202 304 0 chr11 20498751 20498830 -101345026 - MLT1F2 LTR MaLR 0 560 458 1 741 979 209 10 30 chr11 20498833 20499035 -101344821 + B3A SINE B2 1 198 0 1 741 956 152 18 6 chr11 20499197 20499362 -101344494 + MERVL_2A-int LTR ERVL 5524 5690 -71 1 741 652 120 74 15 chr11 20499360 20499495 -101344361 + MERVL_2A-int LTR ERVL 5619 5761 0 1 741 564 248 76 140 chr11 20499495 20499704 -101344152 + MT2A LTR ERVL 1 257 -344 1 741 605 172 139 0 chr11 20499704 20499826 -101344030 + B1_Mur4 SINE Alu 11 149 -1 1 741 564 248 76 140 chr11 20499826 20500000 -101343856 + MT2A LTR ERVL 258 473 -128 1 741 292 217 0 0 chr11 20500007 20500067 -101343789 + MT2B LTR ERVL 482 541 -60 1 741 453 66 0 0 chr11 20500067 20500128 -101343728 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 741 255 321 25 0 chr11 20500303 20500384 -101343472 - L2 LINE L2 -534 2885 2803 3 741 834 217 42 28 chr11 20500389 20500546 -101343310 + B3 SINE B2 1 155 -61 4 741 189 0 0 0 chr11 20500546 20500567 -101343289 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 741 834 217 42 28 chr11 20500567 20500622 -101343234 + B3 SINE B2 156 214 -2 4 741 707 283 25 30 chr11 20500673 20500870 -101342986 + B3A SINE B2 3 198 0 6 741 317 294 195 23 chr11 20501319 20501667 -101342189 - L2 LINE L2 -1021 2398 1991 3 741 506 239 91 68 chr11 20501761 20501981 -101341875 + L1MB4 LINE L1 5579 5803 -377 7 741 525 280 0 25 chr11 20501999 20502120 -101341736 + PB1D7 SINE Alu 3 120 0 8 741 430 321 71 62 chr11 20502131 20502314 -101341542 + L1MB4 LINE L1 5836 6025 -155 7 741 249 33 0 0 chr11 20502314 20502344 -101341512 + (CAGT)n Simple_repeat Simple_repeat 4 33 0 9 741 430 321 71 62 chr11 20502344 20502469 -101341387 + L1MB4 LINE L1 6026 6147 -33 7 741 351 217 0 14 chr11 20502504 20502574 -101341282 + ID4 SINE ID 2 70 -13 1 741 266 284 27 0 chr11 20502895 20502969 -101340887 - PB1D10 SINE Alu -7 110 35 1 741 22 56 0 0 chr11 20503403 20503439 -101340417 + AT_rich Low_complexity Low_complexity 1 36 0 1 741 180 0 0 0 chr11 20503677 20503697 -101340159 + (CGAG)n Simple_repeat Simple_repeat 1 20 0 1 741 937 55 0 0 chr11 20504907 20505035 -101338821 + B1_Mus1 SINE Alu 21 148 0 1 741 296 85 0 48 chr11 20505035 20505097 -101338759 + (A)n Simple_repeat Simple_repeat 1 59 0 1 741 979 217 14 23 chr11 20505127 20505344 -101338512 + B3 SINE B2 2 216 0 1 741 339 292 0 2 chr11 20506186 20506279 -101337577 - ID4_ SINE ID -51 101 10 1 741 202 314 9 19 chr11 20506432 20506456 -101337400 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 741 189 0 0 0 chr11 20506456 20506477 -101337379 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 741 319 222 19 11 chr11 20506477 20506618 -101337238 + (TA)n Simple_repeat Simple_repeat 1 142 0 2 741 763 211 0 14 chr11 20507014 20507158 -101336698 - B1_Mus1 SINE Alu -6 142 1 2 741 331 293 0 0 chr11 20507275 20507350 -101336506 + ID_B1 SINE B4 82 156 -68 2 741 298 327 26 26 chr11 20507350 20507388 -101336468 + PB1D10 SINE Alu 1 113 -4 2 741 1155 88 0 0 chr11 20507391 20507538 -101336318 + B1_Mus1 SINE Alu 2 148 0 2 741 207 157 0 0 chr11 20507541 20507592 -101336264 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2 741 223 246 101 0 chr11 20508125 20508194 -101335662 - PB1D10 SINE Alu -7 110 35 2 741 660 161 64 8 chr11 20509643 20509768 -101334088 + B1_Mur4 SINE Alu 5 136 -14 2 741 642 13 0 0 chr11 20509768 20509843 -101334013 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2 741 1390 87 16 5 chr11 20509843 20510028 -101333828 - B2_Mm2 SINE B2 -7 188 2 2 741 921 137 22 0 chr11 20510139 20510278 -101333578 + B1_Mus1 SINE Alu 1 142 -6 3 741 899 144 6 0 chr11 20510280 20510447 -101333409 + (GGA)n Simple_repeat Simple_repeat 3 170 0 3 741 275 274 71 0 chr11 20511168 20511252 -101332604 + MLT1B LTR MaLR 244 333 -57 3 741 254 311 22 50 chr11 20511636 20511775 -101332081 - L1M5 LINE L1 -454 5670 5536 3 741 336 48 0 0 chr11 20512250 20512292 -101331564 + (T)n Simple_repeat Simple_repeat 1 42 0 3 741 1286 27 0 0 chr11 20512295 20512442 -101331414 - B1_Mm SINE Alu 0 147 1 3 741 919 193 11 16 chr11 20512695 20512879 -101330977 + B3 SINE B2 32 214 -2 3 741 237 128 0 0 chr11 20512964 20513011 -101330845 + (CAGG)n Simple_repeat Simple_repeat 2 48 0 3 741 310 232 348 0 chr11 20514031 20514143 -101329713 - RSINE1 SINE B4 -13 152 2 3 741 185 208 36 36 chr11 20514148 20514203 -101329653 - L2 LINE L2 -959 2460 2406 3 741 298 264 22 22 chr11 20514240 20514329 -101329527 - MER94 DNA AcHobo -17 117 29 4 741 217 200 0 0 chr11 20514780 20514815 -101329041 + (CCG)n Simple_repeat Simple_repeat 3 37 0 4 741 227 307 0 13 chr11 20515357 20515433 -101328423 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 741 375 271 0 30 chr11 20515467 20515566 -101328290 - PB1D10 SINE Alu -1 116 21 4 741 2448 128 71 10 chr11 20515567 20515962 -101327894 - MTC LTR MaLR 0 421 3 4 741 262 318 78 16 chr11 20516532 20516660 -101327196 + ID_B1 SINE B4 41 176 -48 4 741 405 213 21 21 chr11 20516572 20516668 -101327188 + PB1D10 SINE Alu 10 105 -12 4 741 226 311 27 0 chr11 20516699 20516773 -101327083 + ID4_ SINE ID 8 83 0 4 741 23 54 0 0 chr11 20517120 20517157 -101326699 + AT_rich Low_complexity Low_complexity 1 37 0 4 741 1032 217 14 5 chr11 20517246 20517459 -101326397 - B3 SINE B2 -1 215 1 4 741 5301 59 13 6 chr11 20517641 20518322 -101325534 - L1Md_F2 LINE L1 -12 6570 5885 5 741 614 158 32 32 chr11 20518464 20518588 -101325268 - B1_Mur2 SINE Alu -11 138 15 5 741 283 324 100 56 chr11 20519242 20519422 -101324434 - B4A SINE B4 0 292 105 5 741 991 134 0 0 chr11 20519515 20519664 -101324192 - B1_Mur3 SINE Alu 0 149 1 5 741 230 231 71 82 chr11 20519665 20519750 -101324106 - B4A SINE B4 -61 231 148 5 741 2057 88 14 0 chr11 20519988 20520284 -101323572 + ORR1A2 LTR MaLR 1 300 -27 5 741 762 200 7 7 chr11 20520308 20520454 -101323402 + B1_Mur3 SINE Alu 4 149 0 5 741 180 0 0 0 chr11 20520460 20520480 -101323376 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 5 741 441 0 0 0 chr11 20520928 20520977 -101322879 + (TTTTA)n Simple_repeat Simple_repeat 3 51 0 5 741 1242 48 0 0 chr11 20520978 20521125 -101322731 - B1_Mm SINE Alu 0 147 1 5 741 479 207 165 0 chr11 20521131 20521252 -101322604 - ID_B1 SINE B4 0 224 84 6 741 204 67 0 0 chr11 20521297 20521327 -101322529 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 741 565 80 11 43 chr11 20521331 20521423 -101322433 - B1_Mur3 SINE Alu -8 141 53 6 741 416 243 25 67 chr11 20521478 20521597 -101322259 - B1F2 SINE Alu -7 142 29 6 741 212 267 0 62 chr11 20521703 20521767 -101322089 + ID4_ SINE ID 2 61 -22 6 741 344 287 16 24 chr11 20521995 20522120 -101321736 - PB1 SINE Alu -3 124 1 6 741 261 57 0 0 chr11 20522323 20522358 -101321498 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 741 375 152 30 0 chr11 20522358 20522424 -101321432 - B1F1 SINE Alu -14 135 68 6 741 957 198 63 19 chr11 20522477 20522683 -101321173 - B3 SINE B2 0 216 2 6 741 1489 99 4 13 chr11 20522975 20523200 -101320656 - Lx2 LINE L1 0 6997 6775 6 741 7828 104 5 15 chr11 20523198 20524585 -101319271 - Lx2 LINE L1 -352 6645 5262 6 741 5703 61 36 7 chr11 20524564 20526045 -101317811 - Lx2 LINE L1 -3689 2194 567 6 741 180 111 0 0 chr11 20526100 20526127 -101317729 + (A)n Simple_repeat Simple_repeat 1 27 0 7 741 231 253 0 0 chr11 20526201 20526280 -101317576 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 741 243 352 23 0 chr11 20526301 20526389 -101317467 + PB1 SINE Alu 21 110 -17 7 741 22 0 0 0 chr11 20526394 20526416 -101317440 + AT_rich Low_complexity Low_complexity 1 22 0 7 741 540 301 19 19 chr11 20527504 20527660 -101316196 + RSINE1 SINE B4 3 158 -7 7 741 864 55 0 0 chr11 20527661 20527771 -101316085 + (TC)n Simple_repeat Simple_repeat 1 110 0 7 741 189 0 0 0 chr11 20527771 20527791 -101316065 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 741 306 0 0 0 chr11 20528797 20528831 -101315025 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 7 741 315 278 29 50 chr11 20529301 20529441 -101314415 + B1_Mm SINE Alu 2 138 -9 7 741 691 220 30 6 chr11 20529491 20529660 -101314196 + B3 SINE B2 5 177 -39 7 741 585 195 0 2 chr11 20530652 20530778 -101313078 - B1_Mur1 SINE Alu -6 143 20 8 741 21 0 0 0 chr11 20531765 20531786 -101312070 + GC_rich Low_complexity Low_complexity 1 21 0 8 741 25 0 0 0 chr11 20532179 20532204 -101311652 + GC_rich Low_complexity Low_complexity 1 25 0 8 741 336 24 0 0 chr11 20532484 20532525 -101311331 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 741 271 295 155 21 chr11 20533619 20533716 -101310140 + B1_Mus1 SINE Alu 3 112 -36 8 741 816 95 0 0 chr11 20534380 20534506 -101309350 - B1_Mus1 SINE Alu -1 147 22 8 741 373 283 23 38 chr11 20534888 20535020 -101308836 - RSINE1 SINE B4 -34 131 2 8 741 21 0 0 0 chr11 20536723 20536744 -101307112 + AT_rich Low_complexity Low_complexity 1 21 0 8 741 864 117 49 35 chr11 20537189 20537331 -101306525 - B1_Mur4 SINE Alu -6 144 1 8 741 1158 181 39 14 chr11 20537447 20537654 -101306202 - B3 SINE B2 -4 212 1 8 741 188 67 0 32 chr11 20540359 20540390 -101303466 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 9 741 182 118 29 0 chr11 20541069 20541103 -101302753 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 9 741 670 136 78 31 chr11 20541240 20541369 -101302487 - B1_Mur1 SINE Alu 0 149 15 9 741 348 174 33 44 chr11 20541291 20541381 -101302475 - MT2B LTR ERVL -346 255 167 9 741 1213 179 14 5 chr11 20541715 20541923 -101301933 + B3 SINE B2 3 212 -4 9 741 1124 228 5 5 chr11 20542147 20542363 -101301493 + B3 SINE B2 1 216 0 9 741 23 0 0 0 chr11 20542365 20542388 -101301468 + AT_rich Low_complexity Low_complexity 1 23 0 9 741 247 310 22 44 chr11 20543379 20543470 -101300386 + PB1 SINE Alu 2 90 -37 9 741 282 51 16 63 chr11 20543545 20543608 -101300248 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 9 741 369 0 0 0 chr11 20544298 20544339 -101299517 + (CTG)n Simple_repeat Simple_repeat 1 41 0 9 741 350 225 52 6 chr11 20545696 20545808 -101298048 - B2_Mm2 SINE B2 -103 113 1 1 741 273 241 95 12 chr11 20545912 20545996 -101297860 + RSINE1 SINE B4 73 163 -2 1 741 360 248 29 10 chr11 20546005 20546107 -101297749 - PB1D9 SINE Alu -16 104 1 1 741 414 103 12 25 chr11 20546814 20546894 -101296962 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 1 741 649 173 0 26 chr11 20549759 20549872 -101293984 + PB1D9 SINE Alu 1 110 -10 1 741 22 35 0 0 chr11 20549942 20549971 -101293885 + AT_rich Low_complexity Low_complexity 1 29 0 1 741 24 32 0 0 chr11 20550615 20550646 -101293210 + AT_rich Low_complexity Low_complexity 1 31 0 1 741 388 326 60 22 chr11 20553828 20554013 -101289843 + MLT1C LTR MaLR 192 383 -84 1 741 911 197 326 25 chr11 20557374 20557696 -101286160 + MTD LTR MaLR 1 419 0 1 741 2848 244 163 56 chr11 20557696 20557861 -101285995 + MTD-int LTR MaLR 1 166 -1092 1 741 1248 92 23 0 chr11 20557861 20558035 -101285821 + B2_Mm1t SINE B2 2 179 -14 1 741 2848 244 163 56 chr11 20558035 20559004 -101284852 + MTD-int LTR MaLR 167 1256 -2 1 741 1386 266 48 36 chr11 20559007 20559420 -101284436 + MTD LTR MaLR 2 419 0 1 741 231 216 0 105 chr11 20559628 20559685 -101284171 - B1_Mus1 SINE Alu -70 78 28 1 741 877 243 11 16 chr11 20559709 20559893 -101283963 - B3 SINE B2 0 216 34 1 741 360 148 0 0 chr11 20559913 20559974 -101283882 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 1 741 565 270 7 45 chr11 20559974 20560129 -101283727 - B1F SINE Alu 0 149 1 1 741 258 341 56 107 chr11 20560129 20560174 -101283682 - B4 SINE B4 -221 71 37 1 741 298 177 51 26 chr11 20560384 20560468 -101283388 + ID4 SINE ID 7 91 -61 1 741 219 69 0 0 chr11 20561433 20561462 -101282394 + (G)n Simple_repeat Simple_repeat 1 29 0 1 741 242 253 125 12 chr11 20561556 20561636 -101282220 - B4 SINE B4 -201 91 3 1 741 1002 108 50 84 chr11 20563326 20563528 -101280328 + B2_Mm2 SINE B2 1 195 0 1 741 734 277 21 26 chr11 20564233 20564250 -101279606 - B3A SINE B2 -5 193 179 1 741 378 0 0 0 chr11 20564250 20564292 -101279564 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 741 486 49 0 0 chr11 20564292 20564352 -101279504 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 741 734 277 21 26 chr11 20564352 20564526 -101279330 - B3A SINE B2 -20 178 3 1 741 432 118 0 0 chr11 20564635 20564703 -101279153 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 741 333 0 0 0 chr11 20564703 20564739 -101279117 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 741 326 253 70 91 chr11 20565911 20566098 -101277758 - MIRb SINE MIR -63 205 23 1 741 362 262 55 0 chr11 20566778 20566942 -101276914 - L1M5 LINE L1 -654 5470 5298 1 741 429 20 0 0 chr11 20567083 20567133 -101276723 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 741 459 273 10 20 chr11 20567270 20567363 -101276493 + RSINE1 SINE B4 66 158 -7 1 741 324 0 0 0 chr11 20567363 20567399 -101276457 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 741 389 232 7 0 chr11 20567428 20567570 -101276286 + (CA)n Simple_repeat Simple_repeat 1 143 0 1 741 180 250 18 9 chr11 20567592 20567705 -101276151 + (CA)n Simple_repeat Simple_repeat 2 115 0 1 741 289 283 17 41 chr11 20567964 20568093 -101275763 + MIRc SINE MIR 104 231 -37 1 741 1546 42 16 10 chr11 20568386 20568579 -101275277 - B2_Mm2 SINE B2 0 195 2 1 741 252 282 12 93 chr11 20568614 20568700 -101275156 - B1F SINE Alu 0 149 71 1 741 272 250 10 143 chr11 20568624 20568722 -101275134 - ID_B1 SINE B4 -10 214 130 1 741 558 136 0 0 chr11 20568726 20568844 -101275012 + (TC)n Simple_repeat Simple_repeat 1 118 0 1 741 504 0 0 0 chr11 20569080 20569136 -101274720 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 741 594 220 147 30 chr11 20569393 20569595 -101274261 - B3 SINE B2 -1 194 1 1 741 943 145 7 0 chr11 20570253 20570398 -101273458 + B1_Mur4 SINE Alu 5 150 0 1 741 2452 151 42 10 chr11 20570583 20570991 -101272865 + MTC LTR MaLR 1 421 0 1 741 611 291 58 6 chr11 20571049 20571222 -101272634 - B3 SINE B2 -34 182 1 1 741 2165 181 25 8 chr11 20575201 20575601 -101268255 - MTD LTR MaLR -8 411 5 1 741 467 254 82 7 chr11 20575605 20575740 -101268116 - B4 SINE B4 -117 175 31 1 741 989 185 123 5 chr11 20576400 20576612 -101267244 - Lx5 LINE L1 0 7050 6814 1 741 299 261 76 59 chr11 20576630 20576748 -101267108 + ID_B1 SINE B4 56 175 -49 1 741 431 234 25 3 chr11 20576667 20576768 -101267088 + PB1D7 SINE Alu 17 118 -31 1 741 263 314 161 8 chr11 20576901 20577155 -101266701 - L2a LINE L2 0 3426 3134 1 741 243 261 11 11 chr11 20577319 20577408 -101266448 + L1MC5 LINE L1 7354 7442 -519 1 92 770 303 70 7 chr11 20578195 20578494 -101265362 + MLT1A0 LTR MaLR 3 320 -45 1 742 2332 164 27 12 chr11 20580053 20580466 -101263390 - MTD LTR MaLR 0 419 1 1 742 327 270 17 95 chr11 20580468 20580615 -101263241 - PB1D10 SINE Alu 0 149 6 1 742 526 316 117 51 chr11 20581196 20581529 -101262327 - ORR1E LTR MaLR -4 355 1 1 742 397 295 36 0 chr11 20582196 20582308 -101261548 - PB1D9 SINE Alu -1 119 4 1 742 605 193 36 22 chr11 20583247 20583385 -101260471 - MT2B LTR ERVL 0 601 462 1 742 975 236 10 0 chr11 20584157 20584356 -101259500 - B3 SINE B2 -10 206 6 1 742 636 200 128 27 chr11 20584471 20584620 -101259236 - B2_Mm2 SINE B2 -30 165 2 1 742 307 173 554 0 chr11 20584779 20584918 -101258938 - B3 SINE B2 0 216 1 1 742 315 122 0 0 chr11 20587767 20587816 -101256040 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 742 775 194 14 28 chr11 20587973 20588116 -101255740 + B1_Mus1 SINE Alu 1 141 -7 1 742 481 237 155 21 chr11 20588148 20588342 -101255514 + L1MB7 LINE L1 4987 5206 -940 1 742 477 219 176 25 chr11 20588395 20588554 -101255302 + L1MB7 LINE L1 5372 5554 -630 1 742 247 225 73 24 chr11 20588561 20588643 -101255213 + PB1D10 SINE Alu 29 114 -3 1 742 279 235 44 0 chr11 20588789 20588857 -101254999 - ID4 SINE ID -10 73 3 1 742 332 250 67 34 chr11 20588910 20589059 -101254797 + L1MB7 LINE L1 6015 6168 -16 1 742 1844 165 46 24 chr11 20589308 20589774 -101254082 + RLTR31_Mm LTR ERVK 9 440 -5 1 742 369 242 96 52 chr11 20589790 20589815 -101254041 + ID SINE ID 52 82 -142 1 742 791 245 96 15 chr11 20589815 20590014 -101253842 + 7SLRNA srpRNA srpRNA 1 215 -99 1 742 517 274 20 20 chr11 20590104 20590253 -101253603 + RSINE1 SINE B4 3 151 -14 1 742 392 205 115 0 chr11 20590364 20590442 -101253414 - PB1D7 SINE Alu -12 108 22 1 742 235 267 17 0 chr11 20590666 20590726 -101253130 + ID4 SINE ID 4 64 -19 1 742 692 234 44 0 chr11 20591533 20591670 -101252186 + B1_Mur2 SINE Alu 6 148 -1 1 742 25 51 0 0 chr11 20591712 20591751 -101252105 + AT_rich Low_complexity Low_complexity 1 39 0 1 742 180 288 18 55 chr11 20592463 20592518 -101251338 + L2b LINE L2 3225 3277 -98 1 742 377 272 108 31 chr11 20592777 20592906 -101250950 - RSINE1 SINE B4 -15 150 12 1 742 975 221 38 19 chr11 20592913 20593125 -101250731 - B3 SINE B2 0 216 1 1 742 354 245 20 41 chr11 20593319 20593417 -101250439 - PB1D7 SINE Alu 0 120 25 1 742 537 207 250 17 chr11 20593451 20593623 -101250233 - B3 SINE B2 -3 213 2 1 742 353 304 115 9 chr11 20594075 20594188 -101249668 - PB1 SINE Alu -2 125 1 1 742 228 35 0 0 chr11 20594921 20594950 -101248906 + (A)n Simple_repeat Simple_repeat 1 29 0 1 742 676 213 0 72 chr11 20598920 20599072 -101244784 - B1_Mus1 SINE Alu 0 148 8 1 742 348 83 0 0 chr11 20599121 20599169 -101244687 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 742 1331 13 0 6 chr11 20599170 20599328 -101244528 + (GGGAGA)n Simple_repeat Simple_repeat 1 157 0 1 742 494 296 25 38 chr11 20599329 20599487 -101244369 - B4A SINE B4 -134 158 3 1 742 402 258 87 43 chr11 20599660 20599798 -101244058 - B1F SINE Alu 0 149 6 1 742 1136 57 0 0 chr11 20599846 20599987 -101243869 - B1_Mm SINE Alu 0 147 7 1 742 464 236 43 111 chr11 20599852 20600014 -101243842 - B4A SINE B4 -71 221 71 1 742 239 301 21 0 chr11 20600553 20600646 -101243210 + L1MD2 LINE L1 6045 6139 -220 1 742 186 71 0 0 chr11 20600854 20600882 -101242974 + (A)n Simple_repeat Simple_repeat 1 28 0 1 742 200 403 69 7 chr11 20601348 20601493 -101242363 + MIR3 SINE MIR 11 164 -44 1 742 378 232 43 9 chr11 20601713 20601812 -101242044 - PB1D10 SINE Alu -16 104 1 1 742 265 181 49 111 chr11 20601741 20601822 -101242034 - MT2B LTR ERVL -370 231 156 1 742 618 174 118 29 chr11 20602858 20602994 -101240862 + B1_Mur3 SINE Alu 2 149 0 1 742 426 237 155 21 chr11 20603155 20603297 -101240559 + MER103 DNA DNA 5 165 -1 1 742 315 0 0 0 chr11 20603926 20603961 -101239895 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 742 423 0 0 0 chr11 20604018 20604065 -101239791 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 742 720 50 20 0 chr11 20604067 20604166 -101239690 - B1_Mus2 SINE Alu -6 141 41 1 742 1291 71 49 5 chr11 20604167 20604351 -101239505 - B2_Mm2 SINE B2 -3 192 1 1 742 1055 79 65 0 chr11 20604405 20604544 -101239312 + B1_Mur4 SINE Alu 1 148 -2 1 742 247 319 135 167 chr11 20605329 20605461 -101238395 + MER5A DNA MER1_type 1 120 -69 1 742 396 220 195 41 chr11 20605461 20605584 -101238272 - B1_Mus2 SINE Alu -1 146 5 1 742 247 319 135 167 chr11 20605584 20605643 -101238213 + MER5A DNA MER1_type 121 186 -3 1 742 258 304 29 29 chr11 20605733 20605838 -101238018 + B4A SINE B4 18 122 -170 1 742 180 0 0 0 chr11 20606188 20606208 -101237648 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 742 578 245 13 77 chr11 20606396 20606551 -101237305 - ID_B1 SINE B4 0 224 80 1 742 627 211 154 67 chr11 20606687 20606895 -101236961 + B4A SINE B4 1 226 -66 2 742 851 273 46 35 chr11 20607259 20607544 -101236312 + B4A SINE B4 3 290 -2 2 742 609 234 170 0 chr11 20607796 20607937 -101235919 + B3 SINE B2 1 165 -51 2 742 398 36 18 0 chr11 20607937 20607993 -101235863 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 742 639 206 114 0 chr11 20608011 20608142 -101235714 - B1_Mus1 SINE Alu 0 148 3 2 742 306 279 0 126 chr11 20608042 20608161 -101235695 - MT2B LTR ERVL -345 256 153 2 742 533 320 55 0 chr11 20608181 20608309 -101235547 - B3A SINE B2 -16 182 48 2 742 408 274 120 0 chr11 20608316 20608433 -101235423 - B1F SINE Alu -16 133 3 2 742 263 216 149 113 chr11 20608433 20608465 -101235391 + MT2B LTR ERVL 119 155 -446 2 742 635 248 7 34 chr11 20608465 20608611 -101235245 + B1_Mur1 SINE Alu 4 145 -4 2 742 240 282 0 0 chr11 20608893 20608971 -101234885 + (TA)n Simple_repeat Simple_repeat 1 78 0 2 742 1533 96 18 22 chr11 20609042 20609265 -101234591 + URR1B DNA MER1_type 3 224 -1 2 742 276 30 0 0 chr11 20609292 20609325 -101234531 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2 742 1070 93 0 0 chr11 20609325 20609465 -101234391 - B1_Mus1 SINE Alu -8 140 1 2 742 744 268 45 20 chr11 20609982 20610184 -101233672 - B3 SINE B2 -6 210 4 2 742 783 212 96 5 chr11 20610240 20610439 -101233417 + ID_B1 SINE B4 2 218 -6 2 742 230 173 35 88 chr11 20610515 20610572 -101233284 - B1F SINE Alu -2 147 94 2 742 268 258 0 43 chr11 20611528 20611597 -101232259 - tRNA-Ala-GCA tRNA tRNA -8 67 2 2 742 252 313 0 81 chr11 20611597 20611608 -101232248 - ID4 SINE ID -3 54 1 2 742 315 186 246 12 chr11 20611824 20611926 -101231930 + B1F1 SINE Alu 1 119 -28 2 742 286 140 20 0 chr11 20612915 20612965 -101230891 + B3A SINE B2 20 70 -128 2 742 377 240 0 0 chr11 20613103 20613178 -101230678 - RSINE1 SINE B4 -87 78 4 2 742 1156 54 0 33 chr11 20614305 20614458 -101229398 - B1_Mus1 SINE Alu 0 148 1 2 742 265 224 0 33 chr11 20614708 20614768 -101229088 - MER58C DNA MER1_type -157 58 1 2 742 210 91 0 0 chr11 20614830 20614863 -101228993 + (CAA)n Simple_repeat Simple_repeat 3 35 0 2 742 562 232 20 98 chr11 20614913 20615066 -101228790 - B1_Mur1 SINE Alu 0 149 9 2 742 666 169 24 24 chr11 20615601 20615618 -101228238 - B1_Mur4 SINE Alu -1 149 133 2 742 3470 66 0 2 chr11 20615618 20616060 -101227796 - L1_Mus1 LINE L1 0 6567 6127 2 742 666 169 24 24 chr11 20616060 20616169 -101227687 - B1_Mur4 SINE Alu -18 132 24 2 742 264 290 96 11 chr11 20616085 20616179 -101227677 - B4 SINE B4 -95 197 96 2 742 1067 230 5 0 chr11 20616354 20616563 -101227293 - B3 SINE B2 -1 215 6 2 742 520 161 0 0 chr11 20616955 20617036 -101226820 - B3 SINE B2 -5 211 131 2 742 329 275 0 0 chr11 20617041 20617110 -101226746 - B2_Mm2 SINE B2 -92 103 35 2 742 1627 37 0 0 chr11 20617181 20617372 -101226484 - B2_Mm1t SINE B2 0 193 3 2 742 269 280 0 0 chr11 20617385 20617435 -101226421 - B1F1 SINE Alu -99 50 1 2 742 297 304 3 14 chr11 20617677 20617792 -101226064 - MIR SINE MIR -2 260 153 2 742 618 206 4 3 chr11 20617821 20617935 -101225921 - B3A SINE B2 -80 115 1 2 742 348 287 0 11 chr11 20617937 20618032 -101225824 - MIR SINE MIR -102 160 67 2 742 879 170 0 20 chr11 20618045 20618195 -101225661 - B1_Mur4 SINE Alu -2 148 2 2 742 741 181 9 10 chr11 20618217 20618367 -101225489 - B1_Mur2 SINE Alu -1 149 1 2 742 2782 205 155 38 chr11 20618684 20619827 -101224029 + Lx9 LINE L1 5488 6832 -812 2 742 211 250 81 116 chr11 20619827 20619913 -101223943 + B4 SINE B4 68 150 -142 2 742 6918 116 35 75 chr11 20619843 20621141 -101222715 + ORR1A4-int LTR MaLR 718 1963 0 2 742 2220 105 6 58 chr11 20621143 20621488 -101222368 + ORR1A4 LTR MaLR 3 329 0 2 742 1880 144 47 22 chr11 20621488 20621850 -101222006 + Lx9 LINE L1 6854 7224 -420 2 742 644 224 45 0 chr11 20622435 20622569 -101221287 - B1F SINE Alu -1 148 9 2 742 270 73 0 0 chr11 20622819 20622860 -101220996 + (T)n Simple_repeat Simple_repeat 1 41 0 2 742 914 215 42 5 chr11 20622955 20623147 -101220709 - B3 SINE B2 -6 210 12 2 742 531 332 25 30 chr11 20623154 20623353 -101220503 - B3A SINE B2 0 198 1 2 742 231 261 29 44 chr11 20623593 20623661 -101220195 + B1F SINE Alu 2 68 -81 2 742 1118 53 0 0 chr11 20625150 20625283 -101218573 + B1_Mus2 SINE Alu 2 134 -13 2 742 209 57 29 0 chr11 20625283 20625318 -101218538 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 742 353 319 211 23 chr11 20627891 20628116 -101215740 - B4 SINE B4 0 292 2 2 742 282 193 0 0 chr11 20628191 20628248 -101215608 + T-rich Low_complexity Low_complexity 1 57 0 2 742 882 150 7 7 chr11 20628248 20628396 -101215460 - B1_Mus1 SINE Alu 0 148 1 2 742 900 65 121 0 chr11 20628483 20628607 -101215249 + B1_Mus1 SINE Alu 3 141 -7 2 742 1225 55 121 0 chr11 20628642 20628807 -101215049 + B2_Mm2 SINE B2 2 186 -9 2 742 274 341 12 0 chr11 20629073 20629155 -101214701 - Tigger5 DNA MER2_type 0 2406 2324 2 742 260 263 78 17 chr11 20629156 20629272 -101214584 - L1MD LINE L1 -549 5693 5571 2 742 1364 141 14 54 chr11 20629954 20630231 -101213625 + RMER1B Other Other 698 963 -103 2 742 335 290 152 5 chr11 20630387 20630571 -101213285 + L1M2 LINE L1 2278 2488 -4361 2 742 1373 87 49 0 chr11 20630670 20630854 -101213002 - B2_Mm2 SINE B2 0 195 3 2 742 622 164 197 0 chr11 20630860 20630982 -101212874 - B1_Mus1 SINE Alu -1 147 2 2 742 847 254 26 78 chr11 20631020 20631327 -101212529 - B4A SINE B4 0 292 2 2 742 593 244 60 40 chr11 20631366 20631545 -101212311 + B3A SINE B2 15 196 -2 2 742 951 230 44 0 chr11 20631552 20631756 -101212100 + B3 SINE B2 4 216 0 2 742 243 88 0 0 chr11 20631806 20631840 -101212016 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2 742 459 269 80 5 chr11 20631896 20632083 -101211773 - L1MB3 LINE L1 -298 5885 5685 2 742 246 316 51 36 chr11 20632222 20632360 -101211496 - B1F SINE Alu -9 140 1 2 742 581 246 147 45 chr11 20632364 20632718 -101211138 - L1MD2 LINE L1 -429 5930 5541 2 742 363 136 0 0 chr11 20632735 20632794 -101211062 + (TCC)n Simple_repeat Simple_repeat 2 60 0 2 742 402 273 11 11 chr11 20632798 20632901 -101210955 - B1F SINE Alu -20 97 2 2 742 26 0 0 0 chr11 20633360 20633386 -101210470 + AT_rich Low_complexity Low_complexity 1 26 0 2 742 202 177 0 75 chr11 20634471 20634538 -101209318 + GA-rich Low_complexity Low_complexity 1 62 0 2 742 519 284 58 23 chr11 20634681 20634854 -101209002 + B4A SINE B4 104 282 -10 2 742 448 315 13 27 chr11 20635112 20635262 -101208594 + RSINE1 SINE B4 3 150 -15 2 742 559 264 0 20 chr11 20635394 20635545 -101208311 + B1F SINE Alu 2 149 0 2 742 403 184 276 17 chr11 20635700 20635816 -101208040 - B1_Mur1 SINE Alu -1 148 3 2 742 1110 70 0 0 chr11 20635921 20636063 -101207793 + B1_Mus2 SINE Alu 2 143 -4 2 742 279 0 0 0 chr11 20636065 20636096 -101207760 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 742 278 336 85 8 chr11 20636714 20636843 -101207013 + L2a LINE L2 2651 2789 -630 2 742 229 354 15 0 chr11 20636904 20636969 -101206887 - ID4_ SINE ID -16 67 2 2 742 895 251 0 10 chr11 20636998 20637191 -101206665 + B3 SINE B2 1 191 -25 2 742 200 326 55 22 chr11 20637614 20637705 -101206151 + L2a LINE L2 3312 3405 -21 2 742 235 321 12 24 chr11 20638570 20638653 -101205203 - ID4 SINE ID 0 83 2 2 742 424 240 67 37 chr11 20638751 20638885 -101204971 + MIR SINE MIR 64 201 -61 2 742 750 245 26 26 chr11 20638916 20639071 -101204785 - RSINE1 SINE B4 -8 157 3 2 742 363 241 0 0 chr11 20639098 20639177 -101204679 + ID4_ SINE ID 2 80 -3 2 742 360 286 219 0 chr11 20639483 20639602 -101204254 + ID_B1 SINE B4 80 224 0 2 742 211 200 0 0 chr11 20641504 20641567 -101202289 + (CCG)n Simple_repeat Simple_repeat 1 63 0 2 742 21 0 0 0 chr11 20643174 20643195 -101200661 + AT_rich Low_complexity Low_complexity 1 21 0 2 742 534 259 71 10 chr11 20643553 20643696 -101200160 - ID_B1 SINE B4 -63 229 80 2 742 564 323 42 31 chr11 20644372 20644564 -101199292 + MER20 DNA MER1_type 26 219 0 2 742 376 27 0 76 chr11 20645025 20645104 -101198752 + (TTTTG)n Simple_repeat Simple_repeat 3 75 0 2 742 1220 41 7 0 chr11 20645104 20645250 -101198606 - B1_Mm SINE Alu 0 147 1 2 742 229 85 42 21 chr11 20645622 20645670 -101198186 + (CACAA)n Simple_repeat Simple_repeat 2 50 0 2 742 607 88 58 23 chr11 20645674 20645848 -101198008 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 742 249 104 38 38 chr11 20645874 20645954 -101197902 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 742 1815 295 52 5 chr11 20645988 20646793 -101197063 + Lx8 LINE L1 4407 5249 -631 2 742 627 250 118 0 chr11 20646804 20646948 -101196908 + B3A SINE B2 2 162 -36 2 742 297 0 0 0 chr11 20646954 20646987 -101196869 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 742 4331 130 65 3 chr11 20647017 20647694 -101196162 - RMER13A LTR ERVK -133 727 9 2 742 1819 284 31 16 chr11 20647733 20648262 -101195594 + Lx8 LINE L1 5266 5799 -81 2 742 634 224 60 26 chr11 20648262 20648413 -101195443 + RSINE1 SINE B4 2 157 -8 2 742 1819 286 84 72 chr11 20648413 20648651 -101195205 + Lx8 LINE L1 5786 6003 -1470 2 742 4139 103 33 2 chr11 20648651 20649232 -101194624 - MT2B LTR ERVL -2 599 1 2 742 1819 286 84 72 chr11 20649232 20649816 -101194040 + Lx8 LINE L1 6004 6643 -830 2 742 377 255 77 65 chr11 20649817 20649850 -101194006 + ID_B1 SINE B4 54 222 -1 2 742 691 172 82 0 chr11 20649850 20649984 -101193872 + B1_Mus2 SINE Alu 3 147 0 2 742 510 152 0 0 chr11 20650040 20650132 -101193724 + GA-rich Low_complexity Low_complexity 2 93 0 3 742 196 327 81 50 chr11 20650136 20650358 -101193498 + L2c LINE L2 3122 3350 -37 3 742 32 43 0 0 chr11 20651481 20651527 -101192329 + AT_rich Low_complexity Low_complexity 1 46 0 3 742 744 201 0 0 chr11 20651546 20651685 -101192171 + B1_Mus1 SINE Alu 2 140 -8 3 742 2897 91 12 12 chr11 20651708 20652108 -101191748 - MTB LTR MaLR 0 400 1 3 742 764 296 25 5 chr11 20652111 20652311 -101191545 - ID_B1 SINE B4 -18 206 3 3 742 21 0 0 0 chr11 20652317 20652338 -101191518 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 416 301 153 38 chr11 20652684 20652998 -101190858 - RLTR9A LTR ERVK 0 368 19 3 742 287 280 21 77 chr11 20653113 20653256 -101190600 - IAP-d-int LTR ERVK -31 6511 6377 3 742 817 296 26 31 chr11 20653375 20653765 -101190091 - RLTR6-int LTR ERV1 -114 7664 7277 3 742 801 166 62 26 chr11 20653831 20654023 -101189833 - RMER16-int LTR ERVK -1706 3700 3502 3 742 9796 125 43 8 chr11 20654007 20655692 -101188164 - RMER16-int LTR ERVK -2114 3292 1570 3 742 1269 285 62 37 chr11 20655730 20656375 -101187481 - RMER16-int LTR ERVK -3812 2355 1695 3 742 722 252 135 26 chr11 20656348 20656634 -101187222 - ETnERV2-int LTR ERVK -4952 2454 2195 3 742 1456 120 5 0 chr11 20656660 20656877 -101186979 + L1_Mus3 LINE L1 549 766 -5891 3 742 24346 136 18 14 chr11 20656878 20659455 -101184401 + L1_Mus3 LINE L1 880 3489 -2394 3 742 1057 102 0 0 chr11 20659455 20659592 -101184264 + B1_Mus1 SINE Alu 3 139 -9 3 742 329 0 24 0 chr11 20659592 20659633 -101184223 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 742 24346 138 16 13 chr11 20659633 20662171 -101181685 + L1_Mus3 LINE L1 3490 6012 -626 3 742 36043 62 5 13 chr11 20662172 20666025 -101177831 + L1Md_F3 LINE L1 353 4175 -1708 3 742 1565 48 0 0 chr11 20666025 20666213 -101177643 - B2_Mm1t SINE B2 -5 188 1 3 742 11901 44 1 8 chr11 20666213 20667633 -101176223 + L1Md_F3 LINE L1 4176 5586 -297 3 742 8475 30 7 0 chr11 20667633 20668624 -101175232 + L1Md_F3 LINE L1 5587 6584 0 3 742 3848 116 55 12 chr11 20668638 20669242 -101174614 + Lx LINE L1 5998 6627 -27 3 742 23 0 0 0 chr11 20669325 20669348 -101174508 + AT_rich Low_complexity Low_complexity 1 23 0 3 742 3197 32 42 3 chr11 20669666 20670047 -101173809 + MTA_Mm LTR MaLR 1 396 0 3 742 965 214 110 80 chr11 20670648 20671077 -101172779 - RMER2 LTR ERV1 -30 537 1 3 742 30 59 0 0 chr11 20671189 20671240 -101172616 + AT_rich Low_complexity Low_complexity 1 51 0 3 742 462 256 67 15 chr11 20671245 20671380 -101172476 - B1F2 SINE Alu -7 142 1 3 742 230 306 0 0 chr11 20671519 20671581 -101172275 + ID4 SINE ID 20 81 -2 3 742 3446 150 25 53 chr11 20671613 20672259 -101171597 - RLTR5_Mm LTR ERV1 0 628 1 3 742 2690 95 32 0 chr11 20672397 20672480 -101171376 - MT2B LTR ERVL 0 601 515 3 742 3220 92 9 5 chr11 20672480 20672915 -101170941 - RLTR9B LTR ERVK 0 437 1 3 742 2690 95 32 0 chr11 20672915 20673241 -101170615 - MT2B LTR ERVL -87 514 180 3 742 2356 165 61 60 chr11 20673241 20673795 -101170061 - RLTR20B2 LTR ERVK -2 558 4 3 742 595 178 197 0 chr11 20673795 20673945 -101169911 - MT2B LTR ERVL -418 183 4 3 742 1955 156 314 27 chr11 20673970 20674445 -101169411 + RMER19C LTR ERVK 1 611 0 3 742 357 177 0 0 chr11 20674498 20674577 -101169279 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 742 1076 224 5 0 chr11 20674623 20674828 -101169028 - B3 SINE B2 -6 210 5 3 742 186 43 0 0 chr11 20674835 20674858 -101168998 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 742 372 233 105 0 chr11 20674858 20674944 -101168912 - PB1D7 SINE Alu -14 106 12 3 742 229 345 45 10 chr11 20674957 20675156 -101168700 + L1M5 LINE L1 4415 4620 -1526 3 742 1588 114 68 77 chr11 20675221 20675250 -101168606 - ORR1A4 LTR MaLR -8 321 298 3 742 3124 27 67 0 chr11 20675250 20675621 -101168235 + MTA_Mm LTR MaLR 1 396 0 3 742 1588 114 68 77 chr11 20675621 20675915 -101167941 - ORR1A4 LTR MaLR -32 297 1 3 742 952 157 48 43 chr11 20676501 20676687 -101167169 + B2_Mm2 SINE B2 1 187 -8 3 742 1680 208 64 8 chr11 20676704 20677080 -101166776 - MTD LTR MaLR -14 405 18 3 742 1178 173 25 5 chr11 20677156 20677354 -101166502 + B3 SINE B2 1 202 -14 3 742 631 128 88 0 chr11 20677729 20677831 -101166025 + MurERV4-int LTR ERVK 2811 2921 -2339 3 742 350 140 0 0 chr11 20677830 20677880 -101165976 + MurERV4-int LTR ERVK 4569 4618 -642 3 742 183 80 0 0 chr11 20678561 20678586 -101165270 + (TCC)n Simple_repeat Simple_repeat 1 25 0 3 742 270 173 26 13 chr11 20678876 20678952 -101164904 + CT-rich Low_complexity Low_complexity 1 77 0 3 742 1110 87 105 0 chr11 20679631 20679803 -101164053 - B2_Mm2 SINE B2 -5 190 1 3 742 257 228 0 12 chr11 20680779 20680859 -101162997 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 742 261 0 0 0 chr11 20681588 20681617 -101162239 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 742 523 136 136 0 chr11 20681801 20681904 -101161952 + MTC LTR MaLR 1 117 -304 3 742 669 123 0 0 chr11 20681906 20682012 -101161844 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 3 742 2496 309 96 71 chr11 20682146 20684766 -101159090 - RLTR6-int LTR ERV1 -4578 3200 349 3 742 2369 64 63 3 chr11 20685032 20685394 -101158462 - RLTR47_MM LTR ERV1 -134 398 15 3 742 416 258 39 62 chr11 20685471 20685599 -101158257 + RSINE1 SINE B4 41 165 0 3 742 459 0 0 0 chr11 20685600 20685651 -101158205 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 742 295 331 31 39 chr11 20685846 20685975 -101157881 - RLTR26 LTR ERVK -18 609 482 3 742 180 0 0 0 chr11 20686041 20686061 -101157795 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 3 742 297 289 173 46 chr11 20686129 20686494 -101157362 - RLTR26 LTR ERVK -137 490 95 3 742 512 260 34 48 chr11 20686615 20686821 -101157035 + L1MC4 LINE L1 7785 7987 -55 3 742 354 173 12 62 chr11 20686824 20686904 -101156952 + B1_Mus2 SINE Alu 24 99 -48 3 742 335 240 0 0 chr11 20686910 20686985 -101156871 + RLTR24 LTR ERV1 1 75 -454 3 742 796 179 15 0 chr11 20687354 20687625 -101156231 + GA-rich Low_complexity Low_complexity 1 275 0 3 742 320 288 77 30 chr11 20687762 20687930 -101155926 - MIRb SINE MIR -52 216 41 3 742 256 180 0 47 chr11 20687971 20688035 -101155821 + G-rich Low_complexity Low_complexity 4 64 0 3 742 355 244 44 0 chr11 20689000 20689090 -101154766 + PB1D10 SINE Alu 24 117 0 3 742 1621 27 21 0 chr11 20689747 20689935 -101153921 - B2_Mm1a SINE B2 0 193 2 3 742 1022 208 19 5 chr11 20689975 20690183 -101153673 - B3 SINE B2 -5 211 1 3 742 225 0 0 0 chr11 20690289 20690314 -101153542 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 742 1185 61 0 0 chr11 20690326 20690473 -101153383 - B1_Mm SINE Alu 0 147 1 3 742 921 221 14 27 chr11 20690501 20690720 -101153136 - B3 SINE B2 0 216 1 3 742 888 201 126 11 chr11 20691171 20691362 -101152494 - B3 SINE B2 -2 214 2 3 742 185 233 164 0 chr11 20692051 20692124 -101151732 - MIR SINE MIR -61 147 63 3 742 2736 116 105 57 chr11 20693269 20693774 -101150082 - RLTR24 LTR ERV1 0 529 1 3 742 570 232 7 80 chr11 20695357 20695507 -101148349 + B1F2 SINE Alu 4 142 -7 3 742 379 250 89 57 chr11 20696462 20696585 -101147271 + B1F SINE Alu 1 127 -22 3 742 699 120 0 0 chr11 20696608 20696716 -101147140 + (GAA)n Simple_repeat Simple_repeat 1 108 0 3 742 974 230 20 0 chr11 20696981 20697185 -101146671 + B3 SINE B2 1 208 -8 3 742 908 152 6 0 chr11 20697223 20697388 -101146468 + GA-rich Low_complexity Low_complexity 4 169 0 3 742 368 345 11 39 chr11 20698323 20698501 -101145355 - MIR SINE MIR -32 230 58 3 742 208 315 20 61 chr11 20698635 20698733 -101145123 - MIR3 SINE MIR -1 207 114 3 742 743 332 119 44 chr11 20699260 20699764 -101144092 + MLT1F2 LTR MaLR 19 560 0 3 742 587 70 43 17 chr11 20699934 20700051 -101143805 + (TCTCCC)n Simple_repeat Simple_repeat 3 122 0 3 742 843 151 43 14 chr11 20700072 20700213 -101143643 - B1_Mus1 SINE Alu -3 145 1 3 742 242 349 45 23 chr11 20700290 20700466 -101143390 - MIRb SINE MIR -22 246 67 3 742 438 20 0 0 chr11 20701091 20701142 -101142714 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 742 512 308 84 24 chr11 20701845 20702058 -101141798 - MER2 DNA MER2_type -34 311 86 3 742 546 307 46 31 chr11 20702484 20702679 -101141177 + B3A SINE B2 1 198 0 3 742 223 298 143 0 chr11 20703503 20703587 -101140269 - PB1D10 SINE Alu -20 97 2 3 742 3210 48 8 8 chr11 20704974 20705374 -101138482 + MTB LTR MaLR 1 400 0 3 742 441 0 0 0 chr11 20705428 20705477 -101138379 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 3 742 235 250 169 56 chr11 20705477 20705566 -101138290 - PB1D10 SINE Alu -12 105 7 3 742 228 198 46 119 chr11 20705735 20705844 -101138012 + RMER16 LTR ERVK 1 101 -432 3 742 685 223 176 8 chr11 20705866 20706110 -101137746 + ORR1D2 LTR MaLR 85 369 -1 3 742 1256 84 84 0 chr11 20706190 20706368 -101137488 + B2_Mm2 SINE B2 2 194 -1 3 742 348 280 156 23 chr11 20706425 20706494 -101137362 + B4A SINE B4 146 214 -78 3 742 449 76 15 0 chr11 20706494 20706560 -101137296 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 3 742 348 280 156 23 chr11 20706560 20706618 -101137238 + B4A SINE B4 215 289 -3 3 742 250 286 14 0 chr11 20706621 20706691 -101137165 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 742 340 261 129 14 chr11 20707072 20707212 -101136644 + MTE2b LTR MaLR 16 171 -208 3 742 304 243 0 41 chr11 20707219 20707292 -101136564 + B3 SINE B2 1 70 -146 3 742 267 182 0 18 chr11 20707358 20707414 -101136442 - B2_Mm2 SINE B2 -94 101 47 3 742 982 136 11 29 chr11 20707464 20707638 -101136218 - B2_Mm1t SINE B2 -21 172 2 3 742 297 242 39 39 chr11 20707652 20707755 -101136101 + B3 SINE B2 107 209 -7 3 742 253 250 0 0 chr11 20707778 20707830 -101136026 + MTE2b LTR MaLR 179 230 -149 3 742 290 293 13 0 chr11 20707831 20707906 -101135950 - B3 SINE B2 -140 76 1 3 742 980 246 5 0 chr11 20708927 20709134 -101134722 - B3 SINE B2 -8 208 1 3 743 1091 89 0 0 chr11 20709397 20709532 -101134324 + B1_Mus2 SINE Alu 2 136 -11 3 743 221 0 0 33 chr11 20709532 20709562 -101134294 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 743 752 289 97 12 chr11 20710232 20710424 -101133432 - MTEb LTR MaLR 0 379 173 3 743 411 21 0 0 chr11 20710424 20710472 -101133384 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 743 752 289 97 12 chr11 20710472 20710598 -101133258 - MTEb LTR MaLR -207 172 35 3 743 250 296 81 50 chr11 20710581 20710741 -101133115 + MT2B LTR ERVL 100 264 -337 4 743 739 149 0 108 chr11 20710618 20710776 -101133080 + B1_Mur2 SINE Alu 9 149 0 4 743 243 0 0 0 chr11 20712525 20712552 -101131304 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 743 261 0 0 0 chr11 20712552 20712580 -101131276 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 743 316 297 100 30 chr11 20712625 20712852 -101131004 - MIRb SINE MIR -21 247 14 4 743 548 233 0 25 chr11 20712867 20712986 -101130870 - B1_Mur1 SINE Alu -13 136 21 4 743 22 0 0 0 chr11 20713455 20713477 -101130379 + AT_rich Low_complexity Low_complexity 1 22 0 4 743 231 315 151 43 chr11 20714269 20714448 -101129408 + MLT1F2 LTR MaLR 325 524 -36 4 743 931 157 0 7 chr11 20714448 20714596 -101129260 + B1_Mus1 SINE Alu 2 148 0 4 743 449 267 74 0 chr11 20715281 20715348 -101128508 - RMER30 DNA MER1_type -39 163 87 4 743 201 74 0 0 chr11 20715348 20715375 -101128481 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 743 449 267 74 0 chr11 20715375 20715442 -101128414 - RMER30 DNA MER1_type -116 86 20 4 743 414 0 0 0 chr11 20715449 20715495 -101128361 + (CTAA)n Simple_repeat Simple_repeat 1 46 0 4 743 1034 250 69 8 chr11 20715528 20715790 -101128066 - B4A SINE B4 -6 286 9 4 743 257 295 134 76 chr11 20716267 20716305 -101127551 - ORR1E LTR MaLR -8 351 312 4 743 1190 274 104 9 chr11 20716305 20716651 -101127205 - MTE2b LTR MaLR 0 379 1 4 743 257 295 134 76 chr11 20716651 20716807 -101127049 - ORR1E LTR MaLR -48 311 141 4 743 649 233 196 50 chr11 20716807 20717128 -101126728 + RLTR9A LTR ERVK 1 368 0 4 743 257 295 134 76 chr11 20717128 20717170 -101126686 - ORR1E LTR MaLR -219 140 100 4 743 936 36 7 35 chr11 20717256 20717398 -101126458 - L1Md_F3 LINE L1 0 6584 6447 4 743 380 0 0 0 chr11 20717398 20717442 -101126414 + L1Md_T LINE L1 6262 6305 -277 4 743 923 211 32 59 chr11 20717449 20717670 -101126186 - B3 SINE B2 -1 215 1 4 743 383 259 8 100 chr11 20717805 20717925 -101125931 - MER3 DNA MER1_type -78 131 23 4 743 213 299 15 15 chr11 20718170 20718238 -101125618 - ID4 SINE ID -12 71 4 4 743 249 119 0 0 chr11 20718281 20718323 -101125533 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 743 257 319 34 27 chr11 20718326 20718474 -101125382 + MamRep137 DNA TcMar? 159 307 -137 4 743 361 294 39 19 chr11 20718785 20718889 -101124967 + PB1D7 SINE Alu 3 108 -12 4 743 212 222 0 0 chr11 20719878 20719923 -101123933 + B4A SINE B4 1 45 -247 4 743 242 333 0 11 chr11 20719932 20720020 -101123836 + (CATA)n Simple_repeat Simple_repeat 4 90 0 4 743 221 333 52 35 chr11 20720134 20720147 -101123709 - B4 SINE B4 -111 181 144 4 743 227 367 63 0 chr11 20720147 20720226 -101123630 - B1F1 SINE Alu -60 89 6 4 743 221 333 52 35 chr11 20720226 20720249 -101123607 - B4 SINE B4 -111 143 65 4 743 204 221 143 0 chr11 20721747 20721824 -101122032 + L2a LINE L2 3337 3424 -2 4 743 207 0 0 0 chr11 20721948 20721971 -101121885 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 4 743 724 184 139 10 chr11 20722112 20722320 -101121536 + RMER4B LTR ERVK 22 256 -329 4 743 377 284 49 36 chr11 20722397 20722589 -101121267 + RMER4B LTR ERVK 348 574 -11 4 743 180 0 0 0 chr11 20725879 20725899 -101117957 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 743 244 364 107 18 chr11 20726632 20726744 -101117112 - MER5A DNA MER1_type -2 187 66 4 743 943 161 0 0 chr11 20727147 20727290 -101116566 - B1_Mur4 SINE Alu -6 144 2 4 743 919 139 0 0 chr11 20727449 20727586 -101116270 - B1_Mur4 SINE Alu -5 145 9 4 743 477 341 77 6 chr11 20727683 20727866 -101115990 + B4 SINE B4 10 205 -87 4 743 315 0 0 0 chr11 20727922 20727957 -101115899 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 743 365 281 97 0 chr11 20728757 20728871 -101114985 + PB1 SINE Alu 1 125 -2 4 743 235 294 103 0 chr11 20728881 20728949 -101114907 + ID4_ SINE ID 2 76 -7 4 743 23 54 0 0 chr11 20730826 20730863 -101112993 + GC_rich Low_complexity Low_complexity 1 37 0 4 743 25 65 0 0 chr11 20731025 20731071 -101112785 + GC_rich Low_complexity Low_complexity 1 46 0 4 743 210 322 73 65 chr11 20732479 20732602 -101111254 + MIR SINE MIR 115 238 -24 4 743 282 143 0 0 chr11 20732804 20732853 -101111003 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 4 743 198 280 20 0 chr11 20732976 20733026 -101110830 - L2 LINE L2 -539 2880 2830 4 743 311 278 0 0 chr11 20733037 20733109 -101110747 - ID4 SINE ID -2 81 10 4 743 23 33 0 0 chr11 20734235 20734265 -101109591 + AT_rich Low_complexity Low_complexity 1 30 0 4 743 378 304 0 47 chr11 20734594 20734612 -101109244 + B4A SINE B4 72 84 -208 4 743 721 172 0 30 chr11 20734612 20734744 -101109112 + B1_Mur1 SINE Alu 3 130 -19 4 743 3356 43 5 0 chr11 20734992 20735386 -101108470 + MTA_Mm LTR MaLR 1 396 0 4 743 365 306 92 44 chr11 20735512 20735741 -101108115 + MER34A LTR ERV1 332 571 0 4 743 506 279 28 35 chr11 20736338 20736483 -101107373 - B1F1 SINE Alu -5 144 1 4 743 684 93 0 0 chr11 20738339 20738436 -101105420 + (TCC)n Simple_repeat Simple_repeat 2 98 0 4 743 630 61 0 0 chr11 20738446 20738528 -101105328 - B1_Mm SINE Alu 0 147 66 4 743 255 250 0 0 chr11 20739026 20739078 -101104778 - MIR SINE MIR -113 149 98 4 743 314 62 0 40 chr11 20739100 20739150 -101104706 + (GGGAGA)n Simple_repeat Simple_repeat 3 50 0 4 743 218 174 87 0 chr11 20739183 20739229 -101104627 + B1F SINE Alu 10 59 -90 4 743 204 55 0 53 chr11 20739385 20739423 -101104433 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 743 1537 248 32 18 chr11 20740337 20740720 -101103136 - MTD LTR MaLR 0 419 1 4 743 486 159 16 38 chr11 20740982 20741096 -101102760 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 743 1058 222 10 0 chr11 20741096 20741299 -101102557 - B3 SINE B2 -10 206 2 4 743 486 159 16 38 chr11 20741299 20741367 -101102489 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 743 24 32 0 0 chr11 20741553 20741584 -101102272 + AT_rich Low_complexity Low_complexity 1 31 0 4 743 996 209 5 0 chr11 20741781 20741972 -101101884 - URR1A DNA MER1_type 0 226 35 4 743 1628 150 137 6 chr11 20742714 20743043 -101100813 + ORR1D1 LTR MaLR 3 374 0 4 743 896 162 55 80 chr11 20743124 20743325 -101100531 - B3A SINE B2 -1 197 2 4 743 335 258 134 0 chr11 20744667 20744764 -101099092 - PB1D10 SINE Alu -7 110 1 4 743 307 250 65 0 chr11 20744693 20744785 -101099071 - MT2B LTR ERVL -361 240 143 4 743 219 194 0 0 chr11 20744938 20744974 -101098882 - B1F2 SINE Alu -111 38 3 4 743 623 243 58 12 chr11 20745020 20745191 -101098665 + MTEb LTR MaLR 112 290 -89 4 743 238 291 0 35 chr11 20745256 20745313 -101098543 + B4 SINE B4 98 152 -140 4 743 318 115 0 0 chr11 20745397 20745458 -101098398 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 4 743 980 268 103 27 chr11 20745459 20746088 -101097768 + L1MD LINE L1 5050 5727 -515 4 743 777 299 9 35 chr11 20746663 20746892 -101096964 + B4A SINE B4 5 227 -65 4 743 303 197 0 47 chr11 20747181 20747245 -101096611 + B4A SINE B4 214 274 -18 4 743 225 0 0 0 chr11 20747284 20747309 -101096547 + (CCA)n Simple_repeat Simple_repeat 2 26 0 4 743 1078 157 142 0 chr11 20747954 20748158 -101095698 + RMER4A LTR ERVK 6 238 -228 4 743 366 23 0 0 chr11 20748167 20748210 -101095646 + (TGG)n Simple_repeat Simple_repeat 2 44 0 4 743 975 172 23 0 chr11 20748212 20748386 -101095470 + RMER4A LTR ERVK 289 466 0 4 743 203 307 146 11 chr11 20749243 20749332 -101094524 + MIR3 SINE MIR 108 208 0 4 743 1460 236 137 3 chr11 20749749 20750114 -101093742 - MTD LTR MaLR -5 414 1 4 743 842 295 128 70 chr11 20750544 20750989 -101092867 - MLT1G3 LTR MaLR -73 522 52 4 743 371 268 121 79 chr11 20751258 20751473 -101092383 + MLT1E3 LTR MaLR 35 258 -422 4 743 280 286 39 11 chr11 20751472 20751631 -101092225 - B3 SINE B2 -3 213 1 4 743 894 270 65 8 chr11 20751730 20751991 -101091865 + MLT1E3 LTR MaLR 349 624 0 4 743 3863 161 29 33 chr11 20752559 20753289 -101090567 - RMER13B LTR ERVK -180 728 2 4 743 303 273 59 20 chr11 20753489 20753590 -101090266 - PB1D9 SINE Alu -5 115 11 4 743 250 250 68 27 chr11 20753536 20753610 -101090246 - B4 SINE B4 -144 148 72 4 743 230 154 0 0 chr11 20754461 20754500 -101089356 - PB1D10 SINE Alu -28 89 51 4 743 195 365 57 21 chr11 20754694 20754834 -101089022 - MER5A DNA MER1_type -14 175 31 4 743 1092 109 3 17 chr11 20754926 20755228 -101088628 + (TATATG)n Simple_repeat Simple_repeat 1 297 0 4 743 357 306 168 6 chr11 20755286 20755447 -101088409 + MIR3 SINE MIR 21 207 -1 4 743 722 323 106 16 chr11 20755502 20755879 -101087977 - Arthur1 DNA Tip100 -116 3831 3421 4 743 356 332 137 22 chr11 20756045 20756316 -101087540 - Arthur1 DNA Tip100 -3644 303 2 4 743 459 293 67 15 chr11 20757514 20757649 -101086207 + RSINE1 SINE B4 4 145 -20 4 743 551 74 12 0 chr11 20757649 20757730 -101086126 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 743 28 29 0 0 chr11 20757744 20757779 -101086077 + AT_rich Low_complexity Low_complexity 1 35 0 4 743 183 188 0 0 chr11 20758112 20758160 -101085696 + (CCTG)n Simple_repeat Simple_repeat 1 48 0 4 743 1103 96 0 0 chr11 20758699 20758845 -101085011 - B1_Mus1 SINE Alu -1 147 2 4 743 519 257 71 112 chr11 20758845 20758900 -101084956 - B4 SINE B4 -213 79 33 4 743 225 0 0 0 chr11 20759698 20759723 -101084133 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 4 743 489 298 189 55 chr11 20760225 20760676 -101083180 - Charlie1b DNA MER1_type 0 523 13 4 743 5169 146 146 32 chr11 20760663 20760918 -101082938 + MTC-int LTR MaLR 30 302 -956 4 743 1320 77 44 0 chr11 20760918 20761100 -101082756 + B2_Mm2 SINE B2 4 193 -2 4 743 5169 146 146 32 chr11 20761100 20761947 -101081909 + MTC-int LTR MaLR 303 1258 0 4 743 2507 138 55 2 chr11 20761947 20762346 -101081510 + MTC LTR MaLR 1 420 -1 4 743 670 67 0 0 chr11 20762574 20762663 -101081193 - B1_Mm SINE Alu 0 147 59 5 743 380 175 71 20 chr11 20762655 20762754 -101081102 + Charlie2b DNA MER1_type 2524 2627 -155 5 743 338 0 24 0 chr11 20762756 20762798 -101081058 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 743 261 339 99 0 chr11 20763418 20763539 -101080317 + LTR85a LTR Gypsy? 425 557 -145 5 743 312 301 204 9 chr11 20765245 20765470 -101078386 - L1MB2 LINE L1 -49 6122 5854 5 743 231 239 29 29 chr11 20765484 20765553 -101078303 - L1MB2 LINE L1 -395 5788 5720 5 743 717 113 487 26 chr11 20766109 20766263 -101077593 - URR1B DNA MER1_type 0 225 1 5 743 218 407 46 11 chr11 20766512 20766686 -101077170 - L2c LINE L2 -13 3374 3195 5 743 544 257 130 46 chr11 20766765 20766981 -101076875 + B4A SINE B4 2 235 -57 5 743 27 49 0 0 chr11 20767042 20767083 -101076773 + AT_rich Low_complexity Low_complexity 1 41 0 5 743 651 225 28 118 chr11 20768320 20768532 -101075324 + ID_B1 SINE B4 16 208 -16 5 743 496 252 27 82 chr11 20768754 20768901 -101074955 - RSINE1 SINE B4 -17 148 10 5 743 1281 48 12 0 chr11 20771414 20771582 -101072274 + B2_Mm1a SINE B2 23 192 -1 5 743 1381 72 0 62 chr11 20772323 20772531 -101071325 - B2_Mm2 SINE B2 0 195 1 5 743 1047 204 33 28 chr11 20772938 20773020 -101070836 + B3 SINE B2 4 88 -128 5 743 3934 145 33 35 chr11 20773020 20773711 -101070145 - RLTR17 LTR ERVK -2 690 1 5 743 1047 204 33 28 chr11 20773711 20773840 -101070016 + B3 SINE B2 89 216 0 5 743 285 233 124 0 chr11 20774255 20774384 -101069472 + L1M5 LINE L1 2782 2926 -3220 5 743 230 224 0 0 chr11 20774390 20774439 -101069417 + BC1_Mm scRNA scRNA 3 51 -101 5 743 240 224 0 0 chr11 20774443 20774510 -101069346 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 743 438 304 94 7 chr11 20774562 20774711 -101069145 + L1M5 LINE L1 3023 3184 -2962 5 743 345 254 237 0 chr11 20774715 20774829 -101069027 - B1_Mur2 SINE Alu 0 149 9 5 743 555 304 24 68 chr11 20775075 20775368 -101068488 + B4A SINE B4 4 283 -9 5 743 575 309 123 15 chr11 20775437 20775901 -101067955 + L1M5 LINE L1 3427 3940 -2206 5 743 186 71 0 0 chr11 20775929 20775957 -101067899 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 5 743 395 286 133 29 chr11 20775986 20776159 -101067697 + L1M5 LINE L1 4462 4652 -1494 5 743 365 309 37 9 chr11 20776162 20776270 -101067586 - PB1D10 SINE Alu -6 111 1 5 743 911 279 110 13 chr11 20776547 20777012 -101066844 + L1M5 LINE L1 5301 5813 -631 5 743 987 32 0 0 chr11 20777258 20777381 -101066475 + (TG)n Simple_repeat Simple_repeat 1 123 0 5 743 219 350 0 39 chr11 20777576 20777680 -101066176 + MIR SINE MIR 162 261 -1 5 743 364 288 45 0 chr11 20777917 20778028 -101065828 + PB1D10 SINE Alu 2 117 0 5 743 297 294 15 0 chr11 20779716 20779784 -101064072 + B4A SINE B4 81 149 -143 5 743 300 228 15 72 chr11 20779730 20779827 -101064029 + B1F2 SINE Alu 10 104 -46 5 743 645 270 158 83 chr11 20779895 20780243 -101063613 - MTE2a LTR MaLR -45 374 1 5 743 1502 303 185 28 chr11 20780244 20780997 -101062859 - MTE2a-int LTR MaLR -2 1578 708 5 743 890 255 35 38 chr11 20781007 20781301 -101062555 - MTE2a-int LTR MaLR -1259 321 1 5 743 752 276 123 109 chr11 20781314 20781664 -101062192 - MTE2a LTR MaLR -14 365 11 5 743 279 222 0 65 chr11 20781712 20781789 -101062067 - ID SINE ID -151 73 2 5 743 286 331 83 14 chr11 20782056 20782200 -101061656 - MIRb SINE MIR -27 241 88 5 743 209 240 0 13 chr11 20782292 20782368 -101061488 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 743 360 377 47 82 chr11 20783420 20783677 -101060179 + MIR SINE MIR 13 260 -2 5 743 501 315 11 6 chr11 20783746 20783925 -101059931 + (TGG)n Simple_repeat Simple_repeat 1 180 0 5 743 899 287 69 32 chr11 20783938 20784215 -101059641 - MTD LTR MaLR -132 287 1 5 743 236 268 83 24 chr11 20784487 20784571 -101059285 + RMER15 LTR ERVL 473 561 -14 5 743 362 310 93 26 chr11 20784614 20784882 -101058974 + L2c LINE L2 2294 2579 -840 5 743 269 325 67 37 chr11 20785190 20785324 -101058532 + L2c LINE L2 2908 3045 -374 5 743 259 268 52 63 chr11 20785466 20785575 -101058281 - PB1D10 SINE Alu 0 120 13 5 743 234 293 98 85 chr11 20785605 20785746 -101058110 + L2c LINE L2 3233 3377 -10 5 743 297 0 0 0 chr11 20785746 20785779 -101058077 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 5 743 2700 197 35 50 chr11 20785779 20786399 -101057457 + RMER19C LTR ERVK 1 611 0 5 743 402 357 40 21 chr11 20787579 20787894 -101055962 + FordPrefect DNA Tip100 590 981 -702 5 743 501 213 171 16 chr11 20787929 20787940 -101055916 + B1F SINE Alu 1 147 0 5 743 585 198 95 0 chr11 20787940 20788056 -101055800 + ID_B1 SINE B4 98 224 0 5 743 279 0 0 0 chr11 20788066 20788097 -101055759 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 743 1212 193 5 0 chr11 20788206 20788408 -101055448 + B3 SINE B2 2 204 -12 5 743 910 226 65 25 chr11 20788437 20788637 -101055219 + B3 SINE B2 2 209 -7 5 743 230 315 87 47 chr11 20789382 20789532 -101054324 + MIRb SINE MIR 83 238 -30 5 743 296 351 17 17 chr11 20791083 20791199 -101052657 - MER91A DNA Tip100 -67 129 14 5 743 1196 205 5 23 chr11 20791263 20791483 -101052373 - B3 SINE B2 0 216 1 5 743 241 200 0 77 chr11 20792127 20792192 -101051664 - Lx6 LINE L1 -729 6731 6672 5 743 985 260 143 23 chr11 20792188 20792531 -101051325 + Lx6 LINE L1 7075 7458 -2 5 743 378 42 0 0 chr11 20792576 20792624 -101051232 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 5 743 2130 171 19 14 chr11 20792655 20793023 -101050833 + MTC LTR MaLR 52 421 0 5 743 342 98 0 0 chr11 20793412 20793463 -101050393 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 743 1196 225 88 39 chr11 20794424 20794921 -101048935 + RMER19B LTR ERVK 1 519 -383 5 743 335 296 76 25 chr11 20797063 20797181 -101046675 + B1F2 SINE Alu 25 148 -1 5 743 228 67 0 0 chr11 20797324 20797354 -101046502 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 743 246 32 0 0 chr11 20797490 20797521 -101046335 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 743 441 54 0 0 chr11 20797523 20797579 -101046277 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 743 1141 74 0 7 chr11 20797962 20798111 -101045745 - B1_Mus1 SINE Alu 0 148 1 5 743 214 29 0 54 chr11 20799659 20799696 -101044160 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 743 521 278 75 14 chr11 20800049 20800195 -101043661 - ID_B1 SINE B4 -11 213 59 5 743 185 306 94 31 chr11 20801175 20801239 -101042617 + MIR SINE MIR 31 98 -164 5 743 188 200 17 0 chr11 20802264 20802324 -101041532 + CT-rich Low_complexity Low_complexity 2 62 0 5 743 626 246 26 138 chr11 20802776 20802849 -101041007 - B3 SINE B2 -3 213 153 5 743 378 0 0 0 chr11 20802849 20802891 -101040965 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 743 626 246 26 138 chr11 20802891 20802989 -101040867 - B3 SINE B2 -64 152 63 5 743 4595 102 117 99 chr11 20802989 20803879 -101039977 - RMER17A2 LTR ERVK 0 906 1 5 743 626 246 26 138 chr11 20803879 20803937 -101039919 - B3 SINE B2 -154 62 9 5 743 1024 162 19 54 chr11 20804010 20804255 -101039601 + ORR1B1 LTR MaLR 1 224 -143 5 743 8233 158 81 56 chr11 20804227 20805928 -101037928 - ORR1B1-int LTR MaLR -220 1743 1 5 743 1793 149 63 7 chr11 20805928 20806231 -101037625 - ORR1B1 LTR MaLR 0 394 75 5 743 184 293 0 0 chr11 20806379 20806420 -101037436 - MIR SINE MIR -124 138 98 5 743 181 279 56 112 chr11 20806952 20807041 -101036815 - L2c LINE L2 0 3375 3292 5 743 182 194 0 0 chr11 20807059 20807090 -101036766 - L2c LINE L2 -318 3069 3039 5 743 332 313 46 13 chr11 20807173 20807325 -101036531 + Lx9 LINE L1 7356 7512 -132 5 743 356 155 0 14 chr11 20807330 20807402 -101036454 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 743 387 0 0 0 chr11 20807402 20807445 -101036411 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 743 270 186 58 0 chr11 20807489 20807575 -101036281 + Lx9 LINE L1 7534 7624 -20 5 743 257 235 218 23 chr11 20807722 20807809 -101036047 + PB1 SINE Alu 24 127 0 5 743 750 290 46 89 chr11 20808185 20808288 -101035568 + MER58B DNA MER1_type 2 87 -254 5 743 482 236 9 19 chr11 20808288 20808396 -101035460 - PB1D7 SINE Alu -11 109 3 5 743 750 290 46 89 chr11 20808396 20808640 -101035216 + MER58B DNA MER1_type 88 334 -7 5 743 780 215 117 11 chr11 20809014 20809202 -101034654 - B3 SINE B2 -7 209 2 5 743 2241 169 28 35 chr11 20810473 20810908 -101032948 - RCHARR1 DNA MER1_type -3 971 540 5 743 1455 75 0 5 chr11 20810919 20811108 -101032748 + B2_Mm2 SINE B2 1 188 -7 5 743 702 253 254 5 chr11 20811108 20811499 -101032357 - RCHARR1 DNA MER1_type -485 489 2 5 743 346 266 0 0 chr11 20811567 20811646 -101032210 - LTR48 LTR ERV1 -32 755 677 5 743 2096 225 70 58 chr11 20811661 20812320 -101031536 - RMER1C Other Other -49 1293 627 5 743 1197 129 34 81 chr11 20812376 20812612 -101031244 + URR1B DNA MER1_type 1 225 0 5 743 2383 157 27 7 chr11 20813594 20814005 -101029851 + MTC LTR MaLR 3 421 0 5 743 213 300 93 73 chr11 20814532 20814683 -101029173 - MIRb SINE MIR -31 231 78 5 743 269 51 26 0 chr11 20814720 20814759 -101029097 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 743 420 120 30 0 chr11 20815000 20815100 -101028756 + (CA)n Simple_repeat Simple_repeat 1 103 0 5 743 1095 219 19 0 chr11 20817880 20818090 -101025766 + RMER19C LTR ERVK 398 611 0 5 743 352 286 0 21 chr11 20819162 20819255 -101024601 - MLT1A1 LTR MaLR -1 407 317 5 743 334 319 302 10 chr11 20819537 20819837 -101024019 - MLT1A1 LTR MaLR -21 387 1 5 743 1178 61 7 0 chr11 20820132 20820279 -101023577 - B1_Mus1 SINE Alu 0 148 1 5 743 528 152 0 0 chr11 20820491 20820590 -101023266 + (TGGA)n Simple_repeat Simple_repeat 4 102 0 5 743 195 270 315 0 chr11 20821518 20821607 -101022249 + MER5B DNA MER1_type 59 175 -3 5 743 418 240 9 80 chr11 20822372 20822485 -101021371 - PB1D10 SINE Alu 0 117 13 5 743 657 247 139 21 chr11 20822501 20822695 -101021161 + ID_B1 SINE B4 2 218 -6 5 743 189 0 0 0 chr11 20823080 20823101 -101020755 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 5 743 362 303 57 8 chr11 20823598 20823721 -101020135 + MER3 DNA MER1_type 78 206 -3 5 743 309 288 14 0 chr11 20823820 20823893 -101019963 + MLT1J LTR MaLR 69 142 -370 5 743 264 382 84 6 chr11 20823879 20824045 -101019811 + MLT1J LTR MaLR 291 469 -43 5 743 5370 50 9 3 chr11 20824108 20824768 -101019088 - L1Md_F2 LINE L1 -1 6581 5918 5 743 2821 34 0 0 chr11 20824768 20825091 -101018765 + L1Md_F2 LINE L1 5587 5909 -673 5 743 1485 78 10 5 chr11 20825363 20825557 -101018299 + B2_Mm2 SINE B2 1 195 0 5 743 234 0 0 0 chr11 20825559 20825585 -101018271 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 5 743 310 220 0 17 chr11 20825604 20825664 -101018192 + B1_Mur4 SINE Alu 1 59 -91 6 743 1242 130 76 14 chr11 20825716 20825927 -101017929 - URR1A DNA MER1_type 0 226 3 6 743 243 88 0 0 chr11 20827150 20827184 -101016672 + (A)n Simple_repeat Simple_repeat 1 34 0 6 743 1631 112 16 12 chr11 20827327 20827580 -101016276 + L1Md_F2 LINE L1 6327 6580 -2 6 743 284 301 52 41 chr11 20828085 20828182 -101015674 - RMER15 LTR ERVL -107 468 371 6 743 764 260 247 6 chr11 20828273 20828613 -101015243 - Lx8 LINE L1 -302 7171 6750 6 743 3078 38 3 0 chr11 20828613 20828978 -101014878 - L1Md_F2 LINE L1 0 6582 6217 6 743 340 254 0 0 chr11 20830484 20830547 -101013309 - ID4_ SINE ID -14 69 7 6 743 315 247 71 10 chr11 20830568 20830666 -101013190 - PB1D10 SINE Alu -9 108 5 6 743 207 299 52 0 chr11 20830927 20831004 -101012852 + GA-rich Low_complexity Low_complexity 1 81 0 6 743 497 176 80 44 chr11 20831646 20831783 -101012073 + L1MA4 LINE L1 5783 5924 -376 6 743 657 281 79 8 chr11 20833619 20833859 -101009997 - MER2 DNA MER2_type -8 337 81 6 743 514 259 52 0 chr11 20834024 20834159 -101009697 - B1F SINE Alu -7 142 1 6 743 216 0 0 0 chr11 20834902 20834926 -101008930 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 743 507 253 73 0 chr11 20836084 20836234 -101007622 - RMER15 LTR ERVL 0 575 415 6 743 1620 0 0 0 chr11 20836544 20836765 -101007091 + (CA)n Simple_repeat Simple_repeat 1 221 0 6 743 1205 41 0 20 chr11 20837576 20837714 -101006142 + B1_Mus1 SINE Alu 2 137 -11 6 743 252 0 0 0 chr11 20837714 20837742 -101006114 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 6 743 1205 41 0 20 chr11 20837742 20837753 -101006103 + B1_Mus1 SINE Alu 138 148 0 6 743 3410 137 14 14 chr11 20838007 20838571 -101005285 - RLTR12A LTR ERVK -4 564 1 6 743 242 269 155 9 chr11 20838985 20839101 -101004755 - MER5B DNA MER1_type -5 173 41 6 743 602 247 20 7 chr11 20839445 20839592 -101004264 + B1F SINE Alu 1 149 0 6 743 593 255 67 81 chr11 20839621 20839830 -101004026 + B4A SINE B4 14 219 -73 6 743 250 188 10 10 chr11 20839830 20839932 -101003924 + A-rich Low_complexity Low_complexity 1 102 0 6 743 398 304 25 12 chr11 20839973 20840133 -101003723 + (CATA)n Simple_repeat Simple_repeat 3 164 0 6 744 216 0 0 0 chr11 20840944 20840968 -101002888 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 744 245 265 124 29 chr11 20840969 20841074 -101002782 - RSINE1 SINE B4 -48 117 3 6 744 420 71 0 0 chr11 20841109 20841165 -101002691 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 744 228 67 0 0 chr11 20841975 20842005 -101001851 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 744 32276 86 2 30 chr11 20842056 20845976 -100997880 - L1_Mus1 LINE L1 0 6567 2825 6 744 1187 61 0 0 chr11 20845976 20846123 -100997733 - B1_Mm SINE Alu 0 147 1 6 744 32276 116 35 39 chr11 20846123 20848716 -100995140 - L1_Mus1 LINE L1 -3059 2824 184 6 744 2579 145 55 42 chr11 20849334 20849808 -100994048 - RLTR28B LTR ERVL -1 480 1 6 744 574 250 140 71 chr11 20849808 20850144 -100993712 - MLT2D LTR ERVL -55 359 1 6 744 2866 146 73 32 chr11 20850313 20851046 -100992810 + RLTR13D2 LTR ERVK 1 1023 0 6 744 2109 195 56 31 chr11 20851118 20851568 -100992288 - RLTR11A2 LTR ERVK 0 527 64 6 744 1692 156 112 66 chr11 20851568 20851960 -100991896 - RMER17C LTR ERVK 0 410 1 6 744 2109 195 56 31 chr11 20851960 20852023 -100991833 - RLTR11A2 LTR ERVK -464 63 1 6 744 387 255 89 18 chr11 20852319 20852431 -100991425 + PB1D9 SINE Alu 1 120 0 6 744 669 149 0 0 chr11 20852447 20852561 -100991295 + (GGGA)n Simple_repeat Simple_repeat 4 117 0 6 744 380 172 203 47 chr11 20853325 20853453 -100990403 + B1F1 SINE Alu 1 148 -1 6 744 396 191 40 11 chr11 20853615 20853790 -100990066 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 744 460 234 22 54 chr11 20853797 20853982 -100989874 + (TATG)n Simple_repeat Simple_repeat 2 180 0 6 744 563 187 138 0 chr11 20854235 20854358 -100989498 - B3 SINE B2 -76 140 1 6 744 231 36 0 0 chr11 20854369 20854397 -100989459 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 744 605 261 0 28 chr11 20854397 20854539 -100989317 - RSINE1 SINE B4 -26 139 2 6 744 1345 98 113 0 chr11 20855005 20855208 -100988648 + URR1A DNA MER1_type 1 226 0 6 744 210 71 0 0 chr11 20855575 20855603 -100988253 + (TTCCC)n Simple_repeat Simple_repeat 2 29 0 6 744 231 114 0 0 chr11 20856393 20856428 -100987428 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 6 744 301 118 0 50 chr11 20856499 20856579 -100987277 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 6 744 436 317 56 52 chr11 20856889 20857122 -100986734 + MLT1A LTR MaLR 11 244 -130 6 744 297 75 0 0 chr11 20857571 20857611 -100986245 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 6 744 225 0 0 0 chr11 20857651 20857676 -100986180 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 744 379 274 11 0 chr11 20858642 20858737 -100985119 + C-rich Low_complexity Low_complexity 6 101 0 6 744 448 255 176 88 chr11 20860026 20860288 -100983568 + RMER15 LTR ERVL 274 558 -17 6 744 287 293 112 82 chr11 20860861 20860995 -100982861 - MLT1A0 LTR MaLR -12 353 216 6 744 545 250 40 96 chr11 20861755 20861954 -100981902 + B3A SINE B2 5 192 -6 6 744 220 346 112 30 chr11 20862643 20862934 -100980922 - L2c LINE L2 -2 3385 3062 6 744 366 264 162 6 chr11 20864953 20865113 -100978743 - ORR1E LTR MaLR -166 193 9 6 744 331 287 23 47 chr11 20865135 20865263 -100978593 + MLT2C1 LTR ERVL 14 138 -259 6 744 1685 284 113 3 chr11 20865427 20866000 -100977856 - MER82 DNA MER2_type -1 652 17 6 744 189 74 0 0 chr11 20866006 20866033 -100977823 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 744 201 39 0 0 chr11 20866508 20866534 -100977322 + (T)n Simple_repeat Simple_repeat 1 26 0 6 744 2017 206 56 20 chr11 20867075 20867423 -100976433 - RMER5 LTR ERV1 -14 520 166 6 744 213 39 0 0 chr11 20867423 20867449 -100976407 + (G)n Simple_repeat Simple_repeat 1 26 0 6 744 2017 206 56 20 chr11 20867449 20867600 -100976256 - RMER5 LTR ERV1 -369 165 4 6 744 958 242 80 66 chr11 20868653 20869016 -100974840 - RLTR9A LTR ERVK 0 368 1 6 744 4444 180 27 20 chr11 20869541 20870387 -100973469 - ETnERV2-int LTR ERVK -1205 6201 5350 6 744 225 0 0 0 chr11 20870389 20870414 -100973442 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 744 273 65 115 53 chr11 20870419 20870506 -100973350 + (CAAAC)n Simple_repeat Simple_repeat 2 93 0 6 744 1179 75 0 0 chr11 20870506 20870653 -100973203 + B1_Mus2 SINE Alu 1 147 0 6 744 273 65 115 53 chr11 20870653 20870678 -100973178 + (CAAAC)n Simple_repeat Simple_repeat 4 31 0 6 744 7063 282 30 24 chr11 20870679 20875045 -100968811 - ETnERV2-int LTR ERVK -2046 5360 328 6 744 28 0 0 0 chr11 20875165 20875193 -100968663 + AT_rich Low_complexity Low_complexity 1 28 0 6 744 957 228 125 55 chr11 20875327 20875671 -100968185 - RLTR9A LTR ERVK 0 368 1 6 744 1049 209 32 56 chr11 20875798 20876138 -100967718 - RMER17C LTR ERVK -3 407 76 6 744 812 155 17 125 chr11 20876145 20876170 -100967686 - RMER17B LTR ERVK -517 441 419 6 744 186 71 0 0 chr11 20876170 20876198 -100967658 + (CAAG)n Simple_repeat Simple_repeat 1 28 0 6 744 812 155 17 125 chr11 20876198 20876467 -100967389 - RMER17B LTR ERVK -540 418 180 6 744 251 296 39 84 chr11 20876448 20876603 -100967253 + MER58B DNA MER1_type 172 319 -22 6 744 195 162 0 0 chr11 20877000 20877037 -100966819 + CT-rich Low_complexity Low_complexity 2 38 0 6 744 277 316 51 0 chr11 20877050 20877129 -100966727 - ID4_ SINE ID 0 83 1 6 744 22 0 0 0 chr11 20877329 20877351 -100966505 + AT_rich Low_complexity Low_complexity 1 22 0 6 744 188 286 78 39 chr11 20877588 20877690 -100966166 - MIRc SINE MIR -117 151 46 6 744 245 364 11 0 chr11 20877831 20877919 -100965937 - PB1D10 SINE Alu -16 101 13 6 744 220 302 21 95 chr11 20878027 20878081 -100965775 + B1F SINE Alu 2 51 -98 6 744 1062 153 153 0 chr11 20878081 20878277 -100965579 - URR1A DNA MER1_type 0 226 1 6 744 220 328 19 85 chr11 20878277 20878347 -100965509 + B1F SINE Alu 52 119 -1 6 744 1667 248 75 71 chr11 20879702 20880250 -100963606 - RMER19C LTR ERVK -12 599 50 6 744 413 250 0 50 chr11 20880272 20880373 -100963483 - PB1D10 SINE Alu -21 96 1 6 744 7175 67 9 0 chr11 20880389 20881274 -100962582 - RLTR13B1 LTR ERVK 0 893 1 6 744 853 258 19 23 chr11 20882827 20883041 -100960815 + B3 SINE B2 3 215 -1 6 744 3749 90 6 4 chr11 20883496 20884040 -100959816 + L1_Mus3 LINE L1 6112 6638 0 6 744 426 88 0 0 chr11 20884108 20884176 -100959680 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 744 440 298 33 104 chr11 20885594 20885901 -100957955 + MER97c DNA MER1_type? 47 331 -759 6 744 344 312 92 23 chr11 20885935 20886109 -100957747 + MER97c DNA MER1_type? 420 605 -485 6 744 63 67 0 0 chr11 20886204 20886323 -100957533 + AT_rich Low_complexity Low_complexity 1 119 0 6 744 538 242 170 42 chr11 20886579 20886838 -100957018 + B4A SINE B4 1 292 0 6 744 226 164 36 0 chr11 20886986 20887041 -100956815 + MER97c DNA MER1_type? 998 1054 -36 6 744 263 316 222 32 chr11 20888369 20888984 -100954872 + L2a LINE L2 2463 3194 -232 6 744 777 306 115 8 chr11 20890180 20890440 -100953416 + B4 SINE B4 1 288 -4 6 744 256 342 70 38 chr11 20891435 20891593 -100952263 + MIRb SINE MIR 68 230 -38 6 744 390 280 42 42 chr11 20892192 20892360 -100951496 + RLTR23 LTR ERV1 263 430 0 6 744 851 266 334 33 chr11 20892911 20893542 -100950314 - L1_Mur3 LINE L1 -1702 4441 3621 6 744 2006 215 32 17 chr11 20893550 20894013 -100949843 - RMER19C LTR ERVK 0 611 142 6 744 4280 276 63 40 chr11 20894048 20894844 -100949012 - L1_Mur3 LINE L1 -2292 3588 2756 6 744 1228 237 28 132 chr11 20894844 20895267 -100948589 + MTE2a LTR MaLR 1 379 0 6 744 4280 276 63 40 chr11 20895267 20896567 -100947289 - L1_Mur3 LINE L1 -3125 2755 1444 6 744 427 276 31 57 chr11 20896670 20896862 -100946994 - RLTR23 LTR ERV1 0 430 244 6 744 292 300 22 14 chr11 20897369 20897592 -100946264 - L1_Rod LINE L1 -6269 903 679 6 744 342 0 0 0 chr11 20901711 20901749 -100942107 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 744 320 87 0 0 chr11 20901751 20901797 -100942059 - RLTR20C LTR ERVK -103 431 386 7 744 515 43 0 14 chr11 20901797 20901868 -100941988 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7 744 1143 82 0 0 chr11 20901868 20902015 -100941841 - B1_Mus2 SINE Alu 0 147 1 7 744 1209 241 53 37 chr11 20902015 20902390 -100941466 - RLTR20C LTR ERVK -134 400 20 7 744 1368 226 56 17 chr11 20903693 20904170 -100939686 - RMER15 LTR ERVL 0 575 27 7 744 651 312 34 5 chr11 20904380 20904586 -100939270 - B4A SINE B4 -75 217 6 7 744 562 288 6 12 chr11 20904731 20904893 -100938963 + B3 SINE B2 51 211 -5 7 744 201 147 0 0 chr11 20905835 20905869 -100937987 + (TAA)n Simple_repeat Simple_repeat 2 35 0 7 744 468 219 123 7 chr11 20906491 20906629 -100937227 + RMER15 LTR ERVL 422 575 0 7 744 194 308 70 91 chr11 20907058 20907201 -100936655 + MIRb SINE MIR 21 160 -108 7 744 207 0 0 0 chr11 20909606 20909629 -100934227 + (A)n Simple_repeat Simple_repeat 1 23 0 7 744 519 218 32 45 chr11 20909907 20909924 -100933932 + ID_B1 SINE B4 73 222 0 7 744 969 82 0 0 chr11 20909924 20910059 -100933797 + B1_Mus1 SINE Alu 14 148 0 7 744 300 243 0 14 chr11 20910417 20910488 -100933368 + ID4 SINE ID 1 70 -13 7 744 346 281 13 70 chr11 20911224 20911381 -100932475 - RMER30 DNA MER1_type -48 154 7 7 744 846 261 5 24 chr11 20912334 20912546 -100931310 + B3 SINE B2 1 208 -8 7 744 256 371 124 0 chr11 20912832 20913026 -100930830 - L3 LINE CR1 -130 4359 4142 7 744 431 141 35 109 chr11 20913738 20913864 -100929992 + B1F SINE Alu 9 129 -20 7 744 919 159 18 12 chr11 20913864 20914201 -100929655 + GA-rich Low_complexity Low_complexity 1 339 0 7 744 205 311 0 0 chr11 20917761 20917822 -100926034 + CT-rich Low_complexity Low_complexity 1 61 0 7 744 592 219 0 8 chr11 20918034 20918158 -100925698 - RSINE1 SINE B4 -41 124 2 7 744 461 303 86 120 chr11 20918494 20918820 -100925036 + MTE2a LTR MaLR 3 317 -62 7 744 1039 226 44 61 chr11 20918866 20919163 -100924693 - MTD LTR MaLR -125 294 3 7 744 27 0 0 0 chr11 20919414 20919441 -100924415 + AT_rich Low_complexity Low_complexity 1 27 0 7 744 291 114 0 0 chr11 20922009 20922053 -100921803 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 744 1035 195 10 24 chr11 20922062 20922267 -100921589 - B3 SINE B2 -14 202 1 7 744 808 37 19 0 chr11 20922273 20922381 -100921475 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 7 744 1187 67 6 12 chr11 20922989 20923155 -100920701 + B2_Mm2 SINE B2 1 165 -30 7 744 1435 55 16 11 chr11 20923176 20923359 -100920497 + B2_Mm2 SINE B2 4 187 -8 7 744 1246 209 132 27 chr11 20923471 20923805 -100920051 - ORR1D2 LTR MaLR -1 369 1 7 744 452 265 66 7 chr11 20925252 20925389 -100918467 + B1F2 SINE Alu 5 149 0 7 744 217 264 31 55 chr11 20926010 20926138 -100917718 + L2 LINE L2 2092 2216 -1203 7 744 428 320 240 6 chr11 20926165 20926665 -100917191 + L2 LINE L2 2346 2962 -457 7 744 186 43 0 0 chr11 20926911 20926934 -100916922 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 744 5713 56 25 24 chr11 20928040 20928638 -100915218 + RLTR13C2 LTR ERVK 1 605 -203 7 744 6322 45 4 3 chr11 20928638 20929400 -100914456 + L1Md_F2 LINE L1 5820 6582 0 7 744 5713 56 25 24 chr11 20929400 20929608 -100914248 + RLTR13C2 LTR ERVK 606 808 0 7 744 290 284 45 11 chr11 20929785 20929874 -100913982 + B1_Mur4 SINE Alu 1 92 -58 7 744 446 280 76 0 chr11 20929795 20929913 -100913943 + ID_B1 SINE B4 91 217 -7 7 744 320 320 68 30 chr11 20931037 20931051 -100912805 + B1F2 SINE Alu 1 11 -138 7 744 3742 78 51 2 chr11 20931051 20931244 -100912612 - RLTR1B LTR ERV1 0 512 321 7 744 252 0 0 0 chr11 20931244 20931272 -100912584 + (CTGGGG)n Simple_repeat Simple_repeat 1 28 0 7 744 3742 78 51 2 chr11 20931272 20931566 -100912290 - RLTR1B LTR ERV1 -192 320 2 7 744 445 276 26 0 chr11 20931567 20931683 -100912173 + ID_B1 SINE B4 94 212 -12 7 744 396 0 0 0 chr11 20931684 20931728 -100912128 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 7 744 353 191 29 0 chr11 20931739 20931807 -100912049 + ID4 SINE ID 9 78 -5 7 744 192 179 0 0 chr11 20932170 20932209 -100911647 + (CATG)n Simple_repeat Simple_repeat 2 40 0 7 744 189 0 0 0 chr11 20932755 20932776 -100911080 + (CAT)n Simple_repeat Simple_repeat 1 21 0 7 744 378 0 0 0 chr11 20932778 20932820 -100911036 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 744 1758 163 44 15 chr11 20932868 20933210 -100910646 + MTB_Mm LTR MaLR 1 352 -55 7 744 216 0 0 0 chr11 20933221 20933245 -100910611 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 744 214 360 16 16 chr11 20933298 20933425 -100910431 + MIRb SINE MIR 142 268 0 7 744 291 338 62 21 chr11 20933522 20933667 -100910189 - B3A SINE B2 0 198 48 7 744 595 223 7 21 chr11 20934864 20935006 -100908850 - B1F SINE Alu 0 149 10 7 744 205 86 0 28 chr11 20935219 20935255 -100908601 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 7 744 1035 53 0 0 chr11 20935255 20935388 -100908468 - B1_Mus2 SINE Alu 0 147 15 7 744 192 158 0 0 chr11 20935584 20935622 -100908234 + T-rich Low_complexity Low_complexity 1 38 0 7 744 747 135 0 60 chr11 20935623 20935757 -100908099 - B1_Mus1 SINE Alu -22 126 1 7 744 221 118 0 19 chr11 20936532 20936584 -100907272 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 744 571 229 22 37 chr11 20936590 20936726 -100907130 + Lx8 LINE L1 7168 7301 -172 7 744 225 286 105 0 chr11 20936892 20936997 -100906859 + PB1D9 SINE Alu 5 120 0 7 744 544 262 52 47 chr11 20937004 20937196 -100906660 + B3A SINE B2 5 197 -1 7 744 288 333 35 0 chr11 20937224 20937311 -100906545 + ID_B1 SINE B4 1 90 -134 7 744 351 241 12 12 chr11 20937318 20937398 -100906458 - PB1D9 SINE Alu -40 80 1 7 744 587 275 64 12 chr11 20937415 20937588 -100906268 - Lx8 LINE L1 -146 7327 7146 7 744 312 278 20 43 chr11 20940459 20940596 -100903260 + L1MC4a LINE L1 7252 7385 -657 7 744 500 89 0 12 chr11 20940897 20940977 -100902879 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 744 269 339 62 0 chr11 20941446 20941576 -100902280 + L2a LINE L2 3288 3425 -1 7 744 777 332 4 36 chr11 20942833 20943111 -100900745 - Tigger7 DNA MER2_type -2199 292 24 7 744 448 268 157 88 chr11 20943860 20944134 -100899722 + ORR1E LTR MaLR 1 293 -66 7 744 535 291 43 0 chr11 20944493 20944634 -100899222 + B1F1 SINE Alu 3 149 0 7 744 348 316 100 59 chr11 20944679 20944918 -100898938 - MLT1I LTR MaLR -65 346 98 7 744 553 105 21 0 chr11 20947835 20947930 -100895926 + (TC)n Simple_repeat Simple_repeat 1 97 0 7 744 252 0 0 0 chr11 20947930 20947958 -100895898 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 744 267 103 0 0 chr11 20948375 20948414 -100895442 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 744 396 279 73 78 chr11 20948554 20948733 -100895123 + MER106A DNA MER1_type 2 179 -57 7 744 596 164 16 32 chr11 20948727 20948853 -100895003 + RLTR15 LTR ERVK 6 129 -230 7 744 243 197 189 0 chr11 20949579 20949660 -100894196 + B1F SINE Alu 1 137 -12 7 744 655 141 0 0 chr11 20949976 20950075 -100893781 - B1_Mus2 SINE Alu -2 145 47 7 744 250 225 0 149 chr11 20950009 20950103 -100893753 - MT2B2 LTR ERVL -320 264 185 7 744 222 62 0 0 chr11 20950152 20950184 -100893672 + (GGTTG)n Simple_repeat Simple_repeat 2 33 0 7 744 416 350 23 31 chr11 20950521 20950758 -100893098 - MIRb SINE MIR -17 251 16 7 744 23 54 0 0 chr11 20952396 20952433 -100891423 + AT_rich Low_complexity Low_complexity 1 37 0 7 744 207 0 0 0 chr11 20953466 20953489 -100890367 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 744 369 0 0 0 chr11 20953489 20953529 -100890327 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 744 362 271 80 35 chr11 20953555 20953713 -100890143 + MTEb LTR MaLR 204 379 0 7 744 361 277 105 40 chr11 20953836 20953960 -100889896 + B1F1 SINE Alu 1 132 -17 7 744 297 0 0 0 chr11 20953975 20954008 -100889848 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 744 555 16 0 0 chr11 20954008 20954071 -100889785 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 744 3424 46 5 8 chr11 20955043 20955440 -100888416 - MTA_Mm LTR MaLR 0 396 1 7 744 2026 93 40 21 chr11 20956704 20957033 -100886823 + IAPEY_LTR LTR ERVK 51 385 0 7 744 387 0 0 0 chr11 20957168 20957211 -100886645 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 744 304 77 0 37 chr11 20957211 20957264 -100886592 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 744 302 67 0 22 chr11 20957309 20957355 -100886501 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 744 234 329 0 0 chr11 20957549 20957619 -100886237 - ID4 SINE ID -12 71 2 7 744 261 0 0 0 chr11 20958492 20958521 -100885335 + (A)n Simple_repeat Simple_repeat 1 29 0 7 744 852 81 7 20 chr11 20958936 20959081 -100884775 + B1_Mus1 SINE Alu 6 147 -1 7 744 253 273 29 57 chr11 20959429 20959499 -100884357 + RSINE1 SINE B4 66 133 -32 7 744 297 0 0 0 chr11 20959503 20959536 -100884320 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 744 220 215 57 71 chr11 20959941 20960011 -100883845 - MIRb SINE MIR -17 251 183 7 744 716 306 40 33 chr11 20960078 20960352 -100883504 + LTR33C LTR ERVL 10 285 -344 7 744 324 253 13 0 chr11 20960368 20960443 -100883413 + LTR33C LTR ERVL 346 421 -208 7 744 213 279 69 79 chr11 20960572 20960673 -100883183 - MIR SINE MIR -154 108 9 7 744 320 0 133 0 chr11 20960753 20960813 -100883043 + (CAGA)n Simple_repeat Simple_repeat 3 70 0 7 744 818 255 33 33 chr11 20963242 20963453 -100880403 + B3 SINE B2 1 211 -5 7 744 313 292 17 26 chr11 20963555 20963671 -100880185 + GA-rich Low_complexity Low_complexity 2 116 0 7 744 264 264 217 11 chr11 20964384 20964476 -100879380 - MIRm SINE MIR -161 115 5 7 744 462 267 62 62 chr11 20965059 20965187 -100878669 - PB1D10 SINE Alu -21 128 1 8 744 287 227 15 29 chr11 20965127 20965195 -100878661 - B4A SINE B4 -146 146 80 8 744 185 250 25 0 chr11 20965280 20965320 -100878536 - MIR SINE MIR -8 254 214 8 744 322 271 72 10 chr11 20965470 20965567 -100878289 - MLT1A1 LTR MaLR 0 408 306 8 744 1020 151 77 12 chr11 20966665 20966682 -100877174 - B2_Mm2 SINE B2 -15 180 164 8 744 240 35 0 0 chr11 20966682 20966711 -100877145 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 744 249 33 0 0 chr11 20966711 20966740 -100877116 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 744 1020 151 77 12 chr11 20966740 20966889 -100876967 - B2_Mm2 SINE B2 -32 163 3 8 744 16012 50 2 1 chr11 20967045 20969744 -100874112 - L1Md_F2 LINE L1 0 6582 3882 8 744 253 294 43 11 chr11 20970573 20970666 -100873190 - MLT1A1 LTR MaLR -298 214 119 8 744 1196 187 19 14 chr11 20970674 20970886 -100872970 + B3 SINE B2 4 216 0 8 744 750 227 30 0 chr11 20970902 20971034 -100872822 + B1_Mur4 SINE Alu 2 137 -13 8 744 261 0 0 0 chr11 20971035 20971064 -100872792 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 8 745 257 255 169 96 chr11 20971605 20971783 -100872073 - MIR SINE MIR -53 209 19 8 745 447 299 233 24 chr11 20972161 20972481 -100871375 - LTR16A LTR ERVL -18 433 46 8 745 5218 121 23 11 chr11 20972684 20973412 -100870444 - RMER19A LTR ERVK 0 737 1 8 745 577 330 47 10 chr11 20973606 20973906 -100869950 + L1MB3 LINE L1 5845 6155 -28 8 745 523 244 162 113 chr11 20974437 20974632 -100869224 + Lx8 LINE L1 7124 7338 -135 8 745 1274 68 0 0 chr11 20974632 20974780 -100869076 + B1_Mus1 SINE Alu 1 148 0 8 745 523 244 162 113 chr11 20974780 20974818 -100869038 + Lx8 LINE L1 7339 7364 -109 8 745 255 31 0 0 chr11 20974818 20974850 -100869006 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 745 523 244 162 113 chr11 20974850 20974943 -100868913 + Lx8 LINE L1 7365 7467 -6 8 745 1555 225 142 6 chr11 20975552 20975918 -100867938 + MTD LTR MaLR 4 419 0 8 745 1402 221 57 51 chr11 20975961 20976333 -100867523 + ORR1D1 LTR MaLR 1 374 0 8 745 446 329 75 12 chr11 20976503 20976663 -100867193 - B4 SINE B4 -120 172 3 8 745 671 232 164 0 chr11 20976856 20977033 -100866823 + B3 SINE B2 1 206 -10 8 745 182 37 37 0 chr11 20977118 20977145 -100866711 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 8 745 353 339 0 35 chr11 20977192 20977308 -100866548 - PB1D10 SINE Alu 0 117 6 8 745 714 200 0 23 chr11 20977905 20978033 -100865823 + B1_Mur2 SINE Alu 11 135 -14 8 745 293 315 85 26 chr11 20978420 20978609 -100865247 - Tigger15a DNA TcMar -43 672 473 8 745 186 308 62 52 chr11 20978728 20978824 -100865032 + MIRm SINE MIR 20 116 -160 8 745 265 250 66 0 chr11 20978936 20979012 -100864844 + MIR SINE MIR 54 134 -128 8 745 294 346 15 0 chr11 20981248 20981378 -100862478 + L1MA5 LINE L1 6157 6288 -12 8 745 330 67 0 0 chr11 20981391 20981436 -100862420 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 745 851 247 39 0 chr11 20981437 20981619 -100862237 - B4 SINE B4 -23 269 81 8 745 258 32 0 0 chr11 20981620 20981651 -100862205 + (T)n Simple_repeat Simple_repeat 1 31 0 8 745 407 183 0 0 chr11 20981660 20981720 -100862136 - B4 SINE B4 -213 79 20 8 745 219 238 103 73 chr11 20981713 20981781 -100862075 + RSINE1 SINE B4 96 165 0 8 745 34 24 0 0 chr11 20981796 20981837 -100862019 + AT_rich Low_complexity Low_complexity 1 41 0 8 745 431 287 87 43 chr11 20982101 20982259 -100861597 - ID_B1 SINE B4 -47 245 79 8 745 180 179 0 0 chr11 20982276 20982315 -100861541 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 8 745 313 321 94 34 chr11 20982354 20982651 -100861205 + L1MC5 LINE L1 7611 7925 -36 8 745 1397 45 0 11 chr11 20983381 20983563 -100860293 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 745 274 243 31 53 chr11 20983594 20983692 -100860164 - MLT1A1 LTR MaLR -294 114 21 8 745 588 173 0 52 chr11 20983808 20983924 -100859932 - PB1D9 SINE Alu -1 119 10 8 745 360 0 0 0 chr11 20984020 20984060 -100859796 + (T)n Simple_repeat Simple_repeat 1 40 0 8 745 2560 96 12 0 chr11 20984223 20984546 -100859310 - ORR1A2 LTR MaLR 0 327 1 8 745 633 162 416 7 chr11 20984732 20984881 -100858975 + B3 SINE B2 3 212 -4 8 745 366 253 103 0 chr11 20985164 20985251 -100858605 + ID_B1 SINE B4 118 213 -11 8 745 186 43 0 0 chr11 20985251 20985274 -100858582 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 8 745 457 263 18 0 chr11 20985386 20985500 -100858356 - PB1D10 SINE Alu -1 116 1 8 745 402 347 6 34 chr11 20985938 20986117 -100857739 + Charlie13a DNA Charlie 144 317 -1197 8 745 422 354 65 78 chr11 20986513 20986648 -100857208 + Charlie13a DNA Charlie 652 778 -736 8 745 929 201 0 0 chr11 20986648 20986792 -100857064 - B1_Mur3 SINE Alu -5 144 1 8 745 422 354 65 78 chr11 20986792 20986965 -100856891 + Charlie13a DNA Charlie 779 956 -558 8 745 441 264 62 35 chr11 20987063 20987208 -100856648 + B1F2 SINE Alu 1 149 0 8 745 221 245 0 0 chr11 20987344 20987397 -100856459 + GA-rich Low_complexity Low_complexity 4 56 0 8 745 388 297 9 0 chr11 20987432 20987543 -100856313 + Charlie13a DNA Charlie 1035 1146 -368 8 745 431 254 81 8 chr11 20987595 20987718 -100856138 - MLT1J LTR MaLR -58 454 323 8 745 453 196 22 0 chr11 20987936 20988024 -100855832 - RLTR11A LTR ERVK 0 528 439 8 745 645 194 10 0 chr11 20988024 20988127 -100855729 - RLTR20D LTR ERVK 0 568 465 8 745 804 139 0 0 chr11 20988149 20988425 -100855431 + (CA)n Simple_repeat Simple_repeat 1 276 0 8 745 2406 179 22 64 chr11 20988425 20988922 -100854934 - RLTR20D LTR ERVK -92 476 1 8 745 2336 150 81 19 chr11 20988922 20989340 -100854516 - RLTR11A LTR ERVK -84 444 1 8 745 213 377 0 0 chr11 20989414 20989475 -100854381 - RSINE1 SINE B4 -104 61 1 8 745 228 391 59 36 chr11 20989795 20990010 -100853846 + L2a LINE L2 3118 3398 -28 8 745 690 211 169 0 chr11 20990053 20990219 -100853637 - B3 SINE B2 -8 208 15 8 745 321 135 0 0 chr11 20991391 20991443 -100852413 + (CAG)n Simple_repeat Simple_repeat 1 52 0 8 745 22 0 0 0 chr11 20991610 20991632 -100852224 + GC_rich Low_complexity Low_complexity 1 22 0 8 745 22 70 0 0 chr11 20991687 20991730 -100852126 + GC_rich Low_complexity Low_complexity 1 43 0 8 745 35 41 0 0 chr11 20991754 20991803 -100852053 + GC_rich Low_complexity Low_complexity 1 49 0 8 745 189 107 0 0 chr11 20993006 20993034 -100850822 + (T)n Simple_repeat Simple_repeat 1 28 0 8 745 189 0 0 0 chr11 20994472 20994493 -100849363 + (GTTTG)n Simple_repeat Simple_repeat 1 21 0 8 745 244 195 11 118 chr11 20994498 20994591 -100849265 - PB1D10 SINE Alu -2 115 33 8 745 258 105 0 0 chr11 20994766 20994804 -100849052 + (TGG)n Simple_repeat Simple_repeat 1 38 0 8 745 460 189 20 50 chr11 20994920 20995020 -100848836 - RSINE1 SINE B4 -45 120 24 8 745 217 208 42 0 chr11 20995649 20995697 -100848159 + ID4_ SINE ID 27 76 -7 8 745 280 281 71 38 chr11 20995754 20995965 -100847891 + L1MC5 LINE L1 7461 7678 -283 8 745 1044 245 33 73 chr11 20996008 20996226 -100847630 + B4A SINE B4 1 216 -76 8 745 196 53 0 50 chr11 20996226 20996266 -100847590 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 8 745 1044 245 33 73 chr11 20996266 20996347 -100847509 + B4A SINE B4 217 288 -4 8 745 1491 254 132 21 chr11 20996593 20997078 -100846778 + Lx8 LINE L1 6206 6744 -729 8 745 297 227 9 102 chr11 20997372 20997395 -100846461 - RLTR25B LTR ERVK -490 538 522 8 745 591 15 0 0 chr11 20997395 20997463 -100846393 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 8 745 297 227 9 102 chr11 20997463 20997547 -100846309 - RLTR25B LTR ERVK -507 521 442 8 745 964 24 8 0 chr11 20997547 20997586 -100846270 - B1_Mus1 SINE Alu -23 125 2 8 745 628 265 202 13 chr11 20997936 20998068 -100845788 + B4A SINE B4 1 147 -145 8 745 252 59 0 0 chr11 20998068 20998102 -100845754 + (GCTG)n Simple_repeat Simple_repeat 2 35 0 8 745 628 265 202 13 chr11 20998102 20998206 -100845650 + B4A SINE B4 148 282 -10 8 745 1953 278 77 8 chr11 20998376 20998963 -100844893 - Lx8 LINE L1 -140 7333 6707 8 745 1091 87 27 0 chr11 20999162 20999312 -100844544 + B2_Mm2 SINE B2 1 154 -41 8 745 210 37 0 0 chr11 20999313 20999340 -100844516 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 745 235 176 176 0 chr11 20999949 21000000 -100843856 - B1_Mur2 SINE Alu -1 148 89 8 745 486 233 0 0 chr11 21000000 21000086 -100843770 - B1_Mus2 SINE Alu -61 86 1 1 745 525 303 12 72 chr11 21000766 21000933 -100842923 + RSINE1 SINE B4 3 159 -6 2 745 23 54 0 0 chr11 21001105 21001142 -100842714 + AT_rich Low_complexity Low_complexity 1 37 0 3 745 396 59 0 0 chr11 21001142 21001193 -100842663 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 745 261 0 0 0 chr11 21001195 21001224 -100842632 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 745 660 248 58 7 chr11 21001227 21001365 -100842491 - B3A SINE B2 -53 145 1 6 745 270 278 58 58 chr11 21003353 21003456 -100840400 - PB1D10 SINE Alu 0 117 15 7 745 387 233 58 81 chr11 21004026 21004133 -100839723 - PB1D10 SINE Alu -7 110 9 8 745 214 394 81 23 chr11 21004795 21004969 -100838887 - L2c LINE L2 -170 3217 3034 9 745 225 366 46 57 chr11 21005225 21005419 -100838437 + MIR SINE MIR 71 262 0 1 745 188 289 84 53 chr11 21005408 21005503 -100838353 - MIRc SINE MIR -106 162 65 1 745 21 0 0 0 chr11 21005994 21006015 -100837841 + AT_rich Low_complexity Low_complexity 1 21 0 1 745 1547 114 168 3 chr11 21006071 21006387 -100837469 - RMER1A Other Other 0 1030 663 1 745 685 196 82 146 chr11 21006411 21006831 -100837025 - RLTR20D LTR ERVK -25 509 1 1 745 1315 261 108 48 chr11 21006831 21007400 -100836456 - RMER1A Other Other -362 668 82 1 745 1487 257 117 8 chr11 21007951 21008445 -100835411 - Lx8 LINE L1 -85 7388 6841 1 745 966 256 87 16 chr11 21008495 21008805 -100835051 + Lx8 LINE L1 6339 6670 -803 1 745 1343 87 11 0 chr11 21008974 21009159 -100834697 + B2_Mm1t SINE B2 3 189 -4 1 745 30 27 0 0 chr11 21009903 21009940 -100833916 + AT_rich Low_complexity Low_complexity 1 37 0 1 745 22 70 0 0 chr11 21010492 21010535 -100833321 + AT_rich Low_complexity Low_complexity 1 43 0 2 745 210 143 0 0 chr11 21010858 21010893 -100832963 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 745 646 186 7 69 chr11 21010924 21011068 -100832788 - B1_Mm SINE Alu -12 135 1 2 745 668 87 208 0 chr11 21011813 21011957 -100831899 - B2_Mm2 SINE B2 -20 175 2 2 745 1170 75 0 0 chr11 21012203 21012349 -100831507 - B1_Mus1 SINE Alu -1 147 2 2 745 815 223 7 0 chr11 21012737 21012885 -100830971 + RSINE1 SINE B4 2 150 -15 2 745 343 212 111 137 chr11 21013646 21013799 -100830057 + MER21B LTR ERV1 40 188 -675 2 745 258 149 0 130 chr11 21013966 21014020 -100829836 - PB1 SINE Alu -49 78 32 2 745 226 286 34 56 chr11 21014053 21014142 -100829714 + MER21B LTR ERV1 501 587 -276 2 745 269 280 11 0 chr11 21014280 21014373 -100829483 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 2 745 287 258 107 8 chr11 21014382 21014503 -100829353 - L1MB8 LINE L1 -2 6176 6044 2 745 201 283 17 0 chr11 21014557 21014617 -100829239 + GA-rich Low_complexity Low_complexity 4 64 0 3 745 705 269 127 45 chr11 21014858 21015464 -100828392 - L1MB8 LINE L1 -308 5870 5215 2 745 911 275 35 35 chr11 21015586 21015869 -100827987 + B4A SINE B4 2 284 -8 3 745 950 198 54 30 chr11 21015989 21016192 -100827664 + B3 SINE B2 3 210 -6 3 745 737 59 191 63 chr11 21018125 21018251 -100825605 + B1_Mm SINE Alu 1 142 -5 3 745 692 162 237 23 chr11 21018505 21018682 -100825174 - B3 SINE B2 0 216 2 3 745 243 0 45 45 chr11 21018922 21018966 -100824890 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 3 745 207 88 0 0 chr11 21018974 21019008 -100824848 + (T)n Simple_repeat Simple_repeat 1 34 0 3 745 24 0 0 0 chr11 21019263 21019287 -100824569 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 184 254 86 43 chr11 21019334 21019404 -100824452 - L4 LINE RTE -289 1740 1668 3 745 28 0 0 0 chr11 21021222 21021250 -100822606 + AT_rich Low_complexity Low_complexity 1 28 0 3 745 261 180 0 0 chr11 21021250 21021300 -100822556 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 745 201 39 0 0 chr11 21021755 21021781 -100822075 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 4 745 2127 259 44 10 chr11 21021804 21022413 -100821443 - Lx7 LINE L1 -400 7296 6667 4 745 2540 129 126 51 chr11 21022418 21022914 -100820942 - RMER4B LTR ERVK -9 576 50 4 745 186 71 0 0 chr11 21022914 21022942 -100820914 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 4 745 2540 129 126 51 chr11 21022942 21022976 -100820880 - RMER4B LTR ERVK -536 49 8 4 745 1536 251 82 25 chr11 21022981 21023805 -100820051 - Lx7 LINE L1 -1018 6678 5772 4 745 292 372 71 16 chr11 21023806 21023989 -100819867 + Tigger12c DNA MER2_type 27 219 -515 4 745 1266 195 0 0 chr11 21024701 21024937 -100818919 - L1_Mus4 LINE L1 -323 6331 6096 4 745 19026 142 15 159 chr11 21024935 21030623 -100813233 - L1_Mus4 LINE L1 -729 5907 1123 4 745 234 0 0 0 chr11 21030623 21030649 -100813207 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 745 2471 138 9 87 chr11 21030649 21030669 -100813187 - L1VL2 LINE L1 -5512 823 823 4 745 1155 50 0 0 chr11 21030669 21030808 -100813048 - B1_Mm SINE Alu -8 139 1 4 745 3701 98 4 7 chr11 21030808 21031364 -100812492 - L1_Mus4 LINE L1 -5512 1122 570 4 745 248 277 53 0 chr11 21031410 21031504 -100812352 - L1M1 LINE L1 -412 5888 5790 5 745 253 288 62 0 chr11 21032038 21032118 -100811738 + MIR SINE MIR 149 233 -29 5 745 21 57 0 0 chr11 21032672 21032707 -100811149 + AT_rich Low_complexity Low_complexity 1 35 0 5 745 651 124 32 103 chr11 21033193 21033319 -100810537 + B1_Mur4 SINE Alu 26 142 -8 5 745 261 243 50 173 chr11 21033194 21033333 -100810523 + B4 SINE B4 111 232 -60 5 745 873 121 14 0 chr11 21033517 21033657 -100810199 + URR1A DNA MER1_type 81 222 -4 5 745 371 275 120 28 chr11 21033958 21034145 -100809711 - L1MDa LINE L1 -4531 2102 1878 5 745 240 143 0 0 chr11 21034147 21034189 -100809667 + Lx9 LINE L1 7422 7463 -181 5 745 458 156 47 8 chr11 21034191 21034320 -100809536 + Lx9 LINE L1 7506 7639 -5 5 745 611 311 84 3 chr11 21034329 21034697 -100809159 - L1MDa LINE L1 -4771 1862 1465 5 745 442 311 70 22 chr11 21034759 21035118 -100808738 - L1MDa LINE L1 -5358 1275 900 5 745 727 276 120 3 chr11 21035305 21035614 -100808242 - L1MDa LINE L1 -6185 448 104 5 745 580 232 82 27 chr11 21035628 21035774 -100808082 - RSINE1 SINE B4 -10 155 2 5 745 667 191 72 78 chr11 21036379 21036572 -100807284 + B3A SINE B2 3 194 -4 5 745 1384 68 5 45 chr11 21036655 21036679 -100807177 - B2_Mm1t SINE B2 0 193 172 6 745 5840 36 0 0 chr11 21036679 21037370 -100806486 + L1Md_T LINE L1 5892 6582 0 6 745 1384 68 5 45 chr11 21037370 21037545 -100806311 - B2_Mm1t SINE B2 -22 171 2 6 745 792 238 116 0 chr11 21038042 21038231 -100805625 - B3 SINE B2 -5 211 1 6 745 359 0 43 0 chr11 21038389 21038435 -100805421 + (TATG)n Simple_repeat Simple_repeat 3 50 0 6 745 715 121 26 0 chr11 21038641 21038757 -100805099 + PB1D9 SINE Alu 2 120 0 6 745 222 37 0 0 chr11 21038768 21038795 -100805061 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6 745 219 204 45 0 chr11 21039088 21039132 -100804724 - ID4 SINE ID -4 79 34 6 745 1144 233 106 116 chr11 21039430 21039828 -100804028 - MTD LTR MaLR 0 419 26 6 745 464 354 44 11 chr11 21041504 21041687 -100802169 - MER20B DNA MER1_type -594 189 1 6 745 21 0 0 0 chr11 21041786 21041807 -100802049 + AT_rich Low_complexity Low_complexity 1 21 0 6 745 1002 199 34 15 chr11 21042817 21043021 -100800835 + B3 SINE B2 9 216 0 7 745 1154 15 0 14 chr11 21043270 21043409 -100800447 + MTA_Mm LTR MaLR 1 137 -259 7 745 1093 37 8 0 chr11 21043401 21043535 -100800321 + MTA_Mm LTR MaLR 262 396 0 7 745 7801 71 5 69 chr11 21043535 21044708 -100799148 + MTA_Mm-int LTR MaLR 1 1098 0 7 745 3350 25 8 2 chr11 21044708 21045102 -100798754 + MTA_Mm LTR MaLR 1 396 0 7 745 198 224 0 75 chr11 21046635 21046688 -100797168 + L3 LINE CR1 2277 2325 -2164 7 745 318 106 0 0 chr11 21049405 21049452 -100794404 + (A)n Simple_repeat Simple_repeat 1 47 0 7 745 1327 40 101 6 chr11 21050761 21050939 -100792917 + B2_Mm2 SINE B2 1 195 0 7 745 697 232 55 6 chr11 21050951 21051116 -100792740 + B3A SINE B2 1 173 -25 7 745 1201 115 60 16 chr11 21052060 21052245 -100791611 + B2_Mm2 SINE B2 1 193 -2 7 745 305 321 249 18 chr11 21052374 21052764 -100791092 - L2 LINE L2 -359 3060 2581 7 745 250 366 0 0 chr11 21052972 21053054 -100790802 - ID4_ SINE ID 0 83 2 7 745 521 198 52 0 chr11 21053065 21053161 -100790695 - PB1D10 SINE Alu -16 101 1 7 745 1440 49 5 32 chr11 21053444 21053634 -100790222 + B2_Mm1t SINE B2 1 185 -8 8 745 364 263 136 0 chr11 21053668 21053786 -100790070 + RSINE1 SINE B4 24 157 -8 8 745 183 191 146 21 chr11 21054104 21054152 -100789704 - MIRc SINE MIR -155 113 60 8 745 616 246 79 25 chr11 21054582 21054826 -100789030 + MTD LTR MaLR 102 417 -2 8 745 579 246 7 86 chr11 21055098 21055249 -100788607 - B1F SINE Alu -10 139 1 8 745 690 185 13 76 chr11 21055460 21055618 -100788238 + B1_Mur2 SINE Alu 2 149 0 8 745 301 277 41 25 chr11 21055673 21055795 -100788061 + PB1 SINE Alu 3 126 -1 8 745 426 277 8 25 chr11 21057819 21057941 -100785915 + PB1D7 SINE Alu 1 120 0 8 745 264 301 131 91 chr11 21058551 21058825 -100785031 + B4A SINE B4 8 292 0 8 745 978 220 147 29 chr11 21059855 21060229 -100783627 - MTD LTR MaLR -1 418 1 8 745 183 198 236 16 chr11 21060390 21060513 -100783343 - L2 LINE L2 -1281 2138 1989 9 745 345 177 9 17 chr11 21061113 21061228 -100782628 + (CCCTAA)n Simple_repeat Simple_repeat 5 118 0 9 745 332 318 124 5 chr11 21061234 21061436 -100782420 - MLT1J LTR MaLR -44 468 243 9 745 228 326 11 44 chr11 21061468 21061558 -100782298 - MLT1J LTR MaLR -347 165 79 9 745 542 96 39 0 chr11 21062647 21062751 -100781105 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 9 745 1074 36 0 0 chr11 21062858 21062996 -100780860 + B1_Mus1 SINE Alu 11 148 0 9 745 231 152 0 0 chr11 21062997 21063043 -100780813 + A-rich Low_complexity Low_complexity 1 46 0 9 745 271 278 69 0 chr11 21065225 21065297 -100778559 - ID4_ SINE ID -4 79 3 9 745 2032 146 118 16 chr11 21065861 21066224 -100777632 + MTB_Mm LTR MaLR 5 404 -3 9 745 469 244 40 8 chr11 21066228 21066242 -100777614 + MTD LTR MaLR 18 36 -383 9 745 1852 166 14 43 chr11 21066242 21066470 -100777386 + RMER17C LTR ERVK 1 219 -191 9 745 836 46 0 9 chr11 21066470 21066580 -100777276 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 745 1852 166 14 43 chr11 21066580 21066773 -100777083 + RMER17C LTR ERVK 220 410 0 9 745 469 236 147 9 chr11 21066773 21067075 -100776781 + MTD LTR MaLR 37 419 0 9 745 249 293 52 0 chr11 21067075 21067131 -100776725 - B1F2 SINE Alu -78 71 13 1 745 901 167 77 16 chr11 21067143 21067326 -100776530 - ORR1C2 LTR MaLR 0 384 191 1 745 351 0 0 0 chr11 21067326 21067365 -100776491 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 745 190 0 67 0 chr11 21068009 21068039 -100775817 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 745 875 50 0 24 chr11 21068039 21068162 -100775694 - B1_Mus1 SINE Alu 0 148 29 1 745 3315 118 11 22 chr11 21068155 21068711 -100775145 - RLTR5_Mm LTR ERV1 -69 559 10 1 745 232 197 213 0 chr11 21068832 21068893 -100774963 + MTEb LTR MaLR 10 83 -276 1 745 258 331 22 108 chr11 21068974 21069113 -100774743 + MTEb LTR MaLR 242 368 -11 1 745 248 360 48 8 chr11 21069253 21069379 -100774477 - LTR33 LTR ERVL -371 144 14 1 745 2651 92 139 15 chr11 21069616 21070089 -100773767 + RLTR47_MM LTR ERV1 1 532 0 1 745 508 190 30 0 chr11 21070217 21070317 -100773539 + PB1 SINE Alu 22 124 -3 1 745 327 279 51 0 chr11 21070349 21070428 -100773428 - ID2 SINE ID 0 83 1 1 745 423 0 0 0 chr11 21070497 21070544 -100773312 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1 745 195 26 103 0 chr11 21070568 21070607 -100773249 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 745 28 0 0 0 chr11 21071507 21071535 -100772321 + AT_rich Low_complexity Low_complexity 1 28 0 1 745 1971 98 174 20 chr11 21071553 21071898 -100771958 - RMER10B LTR ERVL 0 398 1 1 745 330 301 70 27 chr11 21072152 21072408 -100771448 + L1M5 LINE L1 5318 5584 -610 1 745 233 284 119 40 chr11 21072438 21072614 -100771242 + L1M5 LINE L1 5655 5844 -350 1 745 432 0 0 0 chr11 21072637 21072685 -100771171 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 745 428 275 114 0 chr11 21072720 21072851 -100771005 + B1F SINE Alu 2 147 -2 1 745 2329 68 4 21 chr11 21073019 21073389 -100770467 - RMER16 LTR ERVK 0 533 1 1 745 614 269 101 34 chr11 21073389 21073603 -100770253 + B4 SINE B4 83 286 -6 1 745 23 0 0 0 chr11 21074232 21074255 -100769601 + AT_rich Low_complexity Low_complexity 1 23 0 1 745 313 281 26 26 chr11 21074988 21075105 -100768751 + PB1D10 SINE Alu 1 117 0 1 745 334 117 52 0 chr11 21075492 21075569 -100768287 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 1 745 396 0 0 0 chr11 21075572 21075616 -100768240 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 745 413 274 220 28 chr11 21075622 21075836 -100768020 - B4A SINE B4 -36 256 2 1 745 21 0 0 0 chr11 21076016 21076037 -100767819 + AT_rich Low_complexity Low_complexity 1 21 0 1 745 1107 120 0 0 chr11 21076197 21076364 -100767492 + B2_Mm2 SINE B2 2 168 -27 1 745 389 171 0 24 chr11 21076366 21076402 -100767454 + polypurine Low_complexity Low_complexity 3 38 0 1 745 1002 157 0 0 chr11 21076402 21076580 -100767276 + GA-rich Low_complexity Low_complexity 3 180 0 1 745 389 171 0 24 chr11 21076580 21076627 -100767229 + polypurine Low_complexity Low_complexity 39 84 0 1 745 284 312 135 0 chr11 21077132 21077273 -100766583 + MER3 DNA MER1_type 1 160 -49 1 745 431 250 191 0 chr11 21077464 21077600 -100766256 - B3A SINE B2 -36 162 1 1 745 1200 257 71 17 chr11 21077627 21077979 -100765877 - MTE2b LTR MaLR -8 371 1 1 745 286 299 49 22 chr11 21079117 21079294 -100764562 + MER34A LTR ERV1 1 258 -529 1 745 189 74 0 0 chr11 21079918 21079945 -100763911 + (T)n Simple_repeat Simple_repeat 1 27 0 1 745 1240 34 0 0 chr11 21079945 21080092 -100763764 - B1_Mus2 SINE Alu 0 147 1 1 745 337 153 357 0 chr11 21080283 21080381 -100763475 + Lx9 LINE L1 7333 7465 -179 1 745 865 157 7 13 chr11 21080390 21080539 -100763317 + B1_Mur2 SINE Alu 1 148 -1 1 745 29 60 0 0 chr11 21080611 21080661 -100763195 + AT_rich Low_complexity Low_complexity 1 50 0 1 745 516 83 0 30 chr11 21081029 21081128 -100762728 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 745 399 269 45 63 chr11 21081144 21081255 -100762601 - PB1D10 SINE Alu -1 116 8 1 745 457 252 64 32 chr11 21082328 21082484 -100761372 - RLTR31_Mm LTR ERVK 0 561 401 1 745 4774 187 91 119 chr11 21082499 21084181 -100759675 - RMER3D-int LTR ERVK -788 2054 420 1 745 239 265 59 0 chr11 21084197 21084265 -100759591 + RSINE1 SINE B4 80 151 -14 1 745 786 268 58 0 chr11 21084492 21084697 -100759159 + ID_B1 SINE B4 6 222 -2 1 745 4918 151 86 12 chr11 21084824 21085770 -100758086 - RLTR25B LTR ERVK 0 1028 13 1 745 2617 110 131 2 chr11 21086385 21086812 -100757044 - RLTR45 LTR ERVK 0 482 1 1 745 7816 102 3 6 chr11 21086812 21087958 -100755898 - RLTR45-int LTR ERVK -413 7804 6331 1 745 1536 169 75 10 chr11 21088213 21088505 -100755351 + RLTR10E LTR ERVK 1 311 0 1 745 3706 51 20 43 chr11 21088601 21089093 -100754763 - RLTR45-int LTR ERVK -5596 1648 1168 1 745 1838 98 4 21 chr11 21089266 21089547 -100754309 - RLTR45-int LTR ERVK -6067 1177 902 1 745 1879 46 0 0 chr11 21089655 21089874 -100753982 - RLTR45-int LTR ERVK -6334 910 692 1 745 1123 42 0 40 chr11 21090231 21090381 -100753475 - RLTR45-int LTR ERVK -6552 692 549 1 745 3982 89 35 5 chr11 21091194 21091745 -100752111 - RLTR45-int LTR ERVK -6677 567 1 1 745 2510 118 141 7 chr11 21091745 21092170 -100751686 - RLTR45 LTR ERVK 0 482 1 1 745 1959 83 214 46 chr11 21092174 21092605 -100751251 - RLTR47_MM LTR ERV1 -29 503 1 1 745 3047 135 208 72 chr11 21092660 21093089 -100750767 - RMER17A2 LTR ERVK 0 906 383 1 745 903 105 0 0 chr11 21093089 21093222 -100750634 + (GAA)n Simple_repeat Simple_repeat 3 135 0 1 745 3047 135 208 72 chr11 21093222 21093338 -100750518 - RMER17A2 LTR ERVK -524 382 291 1 745 4913 48 2 14 chr11 21093338 21093932 -100749924 - LTRIS_Mus LTR ERV1 0 587 1 1 745 3047 135 208 72 chr11 21093932 21094182 -100749674 - RMER17A2 LTR ERVK -616 290 1 1 745 458 371 8 0 chr11 21094230 21094486 -100749370 - MuRRS4-int LTR ERV1 -130 4933 4676 1 745 283 273 60 67 chr11 21094779 21094928 -100748928 - MMERGLN-int LTR ERV1 -1768 5788 5641 1 745 700 232 33 0 chr11 21095406 21095557 -100748299 - MuRRS4-int LTR ERV1 -1038 4025 3870 1 745 250 246 33 33 chr11 21095558 21095680 -100748176 + GA-rich Low_complexity Low_complexity 1 122 0 1 745 777 212 12 0 chr11 21095756 21095916 -100747940 - L1M2 LINE L1 -644 5647 5486 1 745 694 297 55 19 chr11 21095950 21096221 -100747635 - B4A SINE B4 -10 282 2 1 745 180 184 0 0 chr11 21096239 21096288 -100747568 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 745 290 245 80 68 chr11 21096310 21096472 -100747384 - RSINE1 SINE B4 0 165 2 1 745 276 233 0 0 chr11 21096484 21096544 -100747312 - PB1D9 SINE Alu 0 120 61 1 745 367 218 114 59 chr11 21096570 21096764 -100747092 - L1M2 LINE L1 -812 5485 5304 1 745 289 313 82 29 chr11 21096840 21097047 -100746809 + L1MC5 LINE L1 7705 7922 -39 1 745 404 237 77 77 chr11 21097439 21097582 -100746274 + B3 SINE B2 53 195 0 1 745 928 129 13 33 chr11 21097598 21097750 -100746106 + B1_Mur3 SINE Alu 1 149 0 1 745 638 259 39 39 chr11 21097808 21097989 -100745867 - 7SK RNA RNA -90 241 61 1 745 631 93 0 0 chr11 21098020 21098117 -100745739 + RMER4B LTR ERVK 1 97 -488 1 745 430 90 0 25 chr11 21098247 21098327 -100745529 + RMER17C LTR ERVK 325 402 -8 1 745 1497 125 52 77 chr11 21098336 21098505 -100745351 - RMER17C LTR ERVK -54 356 194 1 745 1211 72 0 6 chr11 21098505 21098673 -100745183 + (GGGAA)n Simple_repeat Simple_repeat 1 167 0 1 745 1497 125 52 77 chr11 21098673 21098868 -100744988 - RMER17C LTR ERVK -217 193 1 1 745 600 232 70 39 chr11 21099231 21099551 -100744305 + MTD LTR MaLR 1 405 -14 1 745 923 201 77 0 chr11 21100012 21100206 -100743650 - B3 SINE B2 -7 209 1 1 745 413 182 78 10 chr11 21100975 21101079 -100742777 + B1_Mur1 SINE Alu 3 115 -34 1 745 2102 65 254 8 chr11 21101075 21101449 -100742407 - RLTR33 LTR ERVK -212 466 1 1 745 317 281 42 100 chr11 21101685 21101875 -100741981 + RMER10A LTR ERVL 1 179 -263 1 746 221 83 28 0 chr11 21102909 21102945 -100740911 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 1 746 1179 75 0 0 chr11 21102982 21103128 -100740728 + B1_Mus2 SINE Alu 2 147 0 1 746 186 43 0 0 chr11 21103130 21103153 -100740703 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 746 381 43 0 0 chr11 21103168 21103215 -100740641 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 746 3808 242 33 36 chr11 21103293 21103306 -100740550 - Lx LINE L1 0 6654 6644 1 746 197 65 0 31 chr11 21103306 21103338 -100740518 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 746 1183 62 0 0 chr11 21103338 21103484 -100740372 - B1_Mus1 SINE Alu -2 146 1 1 746 3808 242 33 36 chr11 21103484 21104490 -100739366 - Lx LINE L1 -11 6643 5638 1 746 3003 134 78 11 chr11 21104491 21104921 -100738935 - RLTR13D3 LTR ERVK 0 1114 647 1 746 1182 68 0 0 chr11 21104921 21105068 -100738788 - B1_Mus1 SINE Alu 0 148 2 1 746 3003 198 102 49 chr11 21105068 21105409 -100738447 - RLTR13D3 LTR ERVK -468 646 3 1 746 1938 207 63 24 chr11 21105418 21105833 -100738023 - RMER16-int LTR ERVK -28 5780 5350 1 746 3564 98 85 8 chr11 21105808 21106335 -100737521 - RMER16-int LTR ERVK -1120 4286 3719 1 746 18668 148 69 102 chr11 21107069 21109001 -100734855 - Lx LINE L1 -525 5361 3175 1 746 734 208 163 93 chr11 21109001 21109345 -100734511 + RLTR9A LTR ERVK 1 368 0 1 746 18668 148 69 102 chr11 21109345 21109592 -100734264 - Lx LINE L1 -2712 3174 2938 1 746 2278 117 131 0 chr11 21109592 21109950 -100733906 - RLTR44A LTR ERVK 0 405 1 1 746 18668 148 69 102 chr11 21109950 21109997 -100733859 - Lx LINE L1 -2949 2937 2891 1 746 522 46 0 0 chr11 21109997 21110062 -100733794 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 1 746 18668 148 69 102 chr11 21110062 21111229 -100732627 - Lx LINE L1 -2996 2890 1717 1 746 2749 90 8 3 chr11 21111229 21111619 -100732237 - MTB LTR MaLR -8 392 1 1 746 18668 148 69 102 chr11 21111619 21112061 -100731795 - Lx LINE L1 -2996 1716 1270 1 746 249 33 0 0 chr11 21112061 21112091 -100731765 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 746 2650 181 12 10 chr11 21112091 21112561 -100731295 - Lx LINE L1 -5388 1269 802 1 746 402 219 0 62 chr11 21112957 21113069 -100730787 - RLTR19-int LTR ERVK -5399 738 634 1 746 402 134 0 0 chr11 21113577 21113644 -100730212 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 746 308 111 19 0 chr11 21114610 21114664 -100729192 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 746 435 211 143 9 chr11 21114682 21114787 -100729069 - RSINE1 SINE B4 -45 120 2 1 746 24 0 0 0 chr11 21115158 21115182 -100728674 + AT_rich Low_complexity Low_complexity 1 24 0 1 746 1007 108 0 0 chr11 21115184 21115323 -100728533 - B1_Mur3 SINE Alu 0 149 11 1 746 460 259 39 97 chr11 21115187 21115341 -100728515 - B4 SINE B4 -69 223 79 1 746 256 307 23 30 chr11 21116227 21116358 -100727498 - HAL1 LINE L1 -863 1644 1515 1 746 237 83 0 0 chr11 21116414 21116450 -100727406 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 746 665 198 9 0 chr11 21116450 21116566 -100727290 - RSINE1 SINE B4 -45 120 4 1 746 391 341 96 56 chr11 21116578 21116901 -100726955 - HAL1 LINE L1 -1115 1392 1057 1 746 229 325 25 0 chr11 21117151 21117231 -100726625 + LTR88b LTR Gypsy? 756 837 0 2 746 1733 259 62 22 chr11 21117480 21118149 -100725707 + RMER1B Other Other 73 820 -522 2 746 381 162 0 0 chr11 21118140 21118208 -100725648 + RMER1B Other Other 996 1063 -3 2 746 322 336 58 32 chr11 21118241 21118264 -100725592 + L1ME1 LINE L1 5255 5277 -1056 2 746 1605 38 16 21 chr11 21118264 21118452 -100725404 + B2_Mm2 SINE B2 2 188 -7 2 746 454 314 62 27 chr11 21118452 21118736 -100725120 + L1ME1 LINE L1 5278 5570 -609 2 746 859 185 14 0 chr11 21118790 21118936 -100724920 + B1_Mus1 SINE Alu 1 148 0 2 746 902 181 154 0 chr11 21119082 21119264 -100724592 + B3 SINE B2 1 210 -6 2 746 356 283 104 12 chr11 21120343 21120547 -100723309 + L1ME1 LINE L1 5781 6003 -176 2 746 440 177 132 9 chr11 21120603 21120717 -100723139 - RSINE1 SINE B4 -35 130 3 2 746 21 0 0 0 chr11 21121213 21121234 -100722622 + AT_rich Low_complexity Low_complexity 1 21 0 2 746 358 318 103 18 chr11 21121838 21122142 -100721714 + RMER20B LTR ERVK 179 511 -5 2 746 21 82 0 0 chr11 21122198 21122247 -100721609 + AT_rich Low_complexity Low_complexity 1 49 0 2 746 1113 89 0 7 chr11 21122275 21122422 -100721434 + B1_Mus1 SINE Alu 3 148 0 2 746 558 0 0 0 chr11 21122586 21122648 -100721208 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 2 746 214 306 194 0 chr11 21122667 21122801 -100721055 + MIRb SINE MIR 39 198 -70 2 746 256 382 89 21 chr11 21123460 21123650 -100720206 + MLT1K LTR MaLR 64 266 -329 2 746 204 125 0 0 chr11 21123856 21123888 -100719968 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2 746 295 240 180 55 chr11 21124097 21124225 -100719631 + MTE2a LTR MaLR 210 353 -26 2 746 233 339 0 0 chr11 21124957 21125022 -100718834 + polypyrimidine Low_complexity Low_complexity 4 68 0 2 746 418 355 72 40 chr11 21125491 21125864 -100717992 + L2 LINE L2 2253 2637 -782 2 746 611 323 133 18 chr11 21125880 21126211 -100717645 + MLT1A LTR MaLR 1 369 -5 2 746 35 0 0 0 chr11 21127464 21127499 -100716357 + AT_rich Low_complexity Low_complexity 1 35 0 2 746 180 0 0 0 chr11 21128264 21128284 -100715572 + (T)n Simple_repeat Simple_repeat 1 20 0 2 746 1279 28 0 14 chr11 21128284 21128430 -100715426 - B1_Mus1 SINE Alu 0 148 5 2 746 607 49 0 12 chr11 21128599 21128681 -100715175 + B1_Mus2 SINE Alu 67 147 0 2 746 2183 130 106 8 chr11 21128708 21129007 -100714849 + RMER4A LTR ERVK 33 366 -100 2 746 438 20 0 0 chr11 21129007 21129058 -100714798 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 746 2183 130 106 8 chr11 21129058 21129153 -100714703 + RMER4A LTR ERVK 367 466 0 2 746 927 216 0 43 chr11 21129153 21129337 -100714519 + MurERV4-int LTR ERVK 1 176 -5084 2 746 9757 19 0 0 chr11 21129337 21131127 -100712729 - L1Md_A LINE L1 0 6582 4793 2 746 9409 140 50 17 chr11 21131127 21131142 -100712714 + MurERV4-int LTR ERVK 173 186 -5074 2 746 1347 62 0 0 chr11 21131142 21131320 -100712536 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 746 9409 140 50 17 chr11 21131320 21132816 -100711040 + MurERV4-int LTR ERVK 187 1734 -3526 2 746 1741 140 7 18 chr11 21132816 21133092 -100710764 + MurERV4-int LTR ERVK 4986 5258 -2 2 746 1337 101 67 5 chr11 21133094 21133304 -100710552 + RMER4A LTR ERVK 1 223 -243 2 746 1481 78 5 15 chr11 21133421 21133616 -100710240 + B2_Mm1t SINE B2 1 193 0 2 746 355 209 0 0 chr11 21133734 21133801 -100710055 - B3 SINE B2 -143 73 7 2 746 417 209 41 50 chr11 21133848 21133969 -100709887 - PB1D9 SINE Alu 0 120 1 2 746 1214 68 0 0 chr11 21134002 21134149 -100709707 + B1_Mus1 SINE Alu 2 148 0 2 746 326 330 75 17 chr11 21134205 21134325 -100709531 - L2a LINE L2 -18 3408 3282 2 746 180 0 0 0 chr11 21134334 21134354 -100709502 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 746 1249 68 0 0 chr11 21134355 21134502 -100709354 - B1_Mus1 SINE Alu 0 148 2 2 746 502 272 129 18 chr11 21134551 21134905 -100708951 - L1MB1 LINE L1 -266 6037 5642 2 746 349 230 209 29 chr11 21134905 21135044 -100708812 - B4A SINE B4 -26 266 103 2 746 479 231 39 0 chr11 21134946 21135050 -100708806 - PB1D7 SINE Alu -1 119 12 2 746 1439 159 18 43 chr11 21135111 21135387 -100708469 + RMER19B LTR ERVK 585 853 -49 2 746 441 0 0 0 chr11 21135391 21135440 -100708416 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 2 746 468 228 21 1 chr11 21135451 21135557 -100708299 + B1_Mur1 SINE Alu 1 114 -35 2 746 276 302 46 19 chr11 21135472 21135580 -100708276 + ID_B1 SINE B4 110 220 -4 2 746 421 261 127 28 chr11 21136110 21136323 -100707533 - L1MA7 LINE L1 -82 6209 5976 2 746 647 285 63 63 chr11 21136349 21136791 -100707065 - RLTR12B LTR ERVK -144 384 9 2 746 509 174 112 0 chr11 21136874 21136972 -100706884 + B1_Mus1 SINE Alu 35 143 -7 2 746 1498 222 111 16 chr11 21137014 21137393 -100706463 + MTD LTR MaLR 5 419 0 2 746 596 294 42 18 chr11 21137458 21137624 -100706232 - ID_B1 SINE B4 0 224 55 2 746 198 71 0 0 chr11 21137706 21137734 -100706122 + (T)n Simple_repeat Simple_repeat 1 28 0 2 746 1048 77 26 65 chr11 21137734 21137887 -100705969 - B1_Mus1 SINE Alu 0 148 2 2 746 380 232 11 53 chr11 21138911 21139098 -100704758 + (CGG)n Simple_repeat Simple_repeat 1 179 0 2 746 25 99 0 0 chr11 21139212 21139293 -100704563 + GC_rich Low_complexity Low_complexity 1 81 0 2 746 21 0 0 0 chr11 21139959 21139980 -100703876 + AT_rich Low_complexity Low_complexity 1 21 0 2 746 253 159 229 14 chr11 21140830 21140900 -100702956 - L1ME1 LINE L1 0 6184 6100 2 746 411 193 0 0 chr11 21141193 21141276 -100702580 + (CATA)n Simple_repeat Simple_repeat 2 84 0 2 746 198 114 29 0 chr11 21141442 21141477 -100702379 - L3b LINE CR1 -10 472 437 2 746 245 323 0 0 chr11 21142143 21142205 -100701651 + MER20 DNA MER1_type 14 75 -144 2 746 978 209 75 20 chr11 21142524 21142724 -100701132 + B3 SINE B2 1 211 -5 2 746 22 0 0 0 chr11 21143039 21143061 -100700795 + AT_rich Low_complexity Low_complexity 1 22 0 2 746 221 329 56 14 chr11 21143075 21143146 -100700710 - ID_B1 SINE B4 -81 143 70 2 746 261 354 0 0 chr11 21143173 21143255 -100700601 + MIR SINE MIR 65 146 -116 2 746 233 105 26 0 chr11 21143335 21143373 -100700483 + tRNA-Phe-TTY tRNA tRNA 1 39 -37 2 746 930 217 97 5 chr11 21144020 21144205 -100699651 - B3 SINE B2 -14 202 1 2 746 3045 138 149 4 chr11 21144563 21145074 -100698782 + RMER4B LTR ERVK 1 585 0 2 746 1511 45 79 0 chr11 21145309 21145487 -100698369 - B2_Mm1t SINE B2 0 193 2 2 746 1259 48 14 0 chr11 21145686 21145831 -100698025 + B1_Mus2 SINE Alu 1 147 0 2 746 186 43 0 0 chr11 21145831 21145854 -100698002 + (A)n Simple_repeat Simple_repeat 1 23 0 2 746 33 43 0 0 chr11 21146253 21146300 -100697556 + AT_rich Low_complexity Low_complexity 1 47 0 2 746 614 230 27 41 chr11 21146642 21146822 -100697034 - B3 SINE B2 -5 190 22 2 746 1576 222 107 45 chr11 21146890 21147309 -100696547 - Lx6 LINE L1 -4 7456 7012 2 746 1783 234 58 39 chr11 21147310 21149011 -100694845 - RMER1B Other Other -557 509 1 2 746 934 189 0 0 chr11 21149659 21149807 -100694049 + B1_Mur4 SINE Alu 3 150 0 2 746 438 283 65 0 chr11 21149920 21150058 -100693798 + B1F SINE Alu 1 147 -2 2 746 243 296 113 53 chr11 21150112 21150262 -100693594 + MIRc SINE MIR 2 160 -108 2 746 1257 81 38 119 chr11 21150900 21151110 -100692746 + B2_Mm2 SINE B2 1 193 -2 2 746 373 268 190 62 chr11 21151330 21151604 -100692252 - RLTR12B LTR ERVK -201 327 19 2 746 241 317 44 34 chr11 21151665 21151800 -100692056 - MIR SINE MIR -107 155 20 2 746 243 146 0 40 chr11 21152201 21152251 -100691605 - L1ME4a LINE L1 -96 6028 5981 2 746 272 268 14 0 chr11 21152358 21152429 -100691427 - PB1 SINE Alu -4 123 52 2 746 823 218 22 16 chr11 21152693 21152875 -100690981 - B3A SINE B2 -15 183 1 2 746 222 257 127 14 chr11 21152896 21152967 -100690889 - BC1_Mm scRNA scRNA -73 79 1 2 746 220 111 37 0 chr11 21153231 21153285 -100690571 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 2 746 309 179 12 93 chr11 21153286 21153372 -100690484 + RLTR25B LTR ERVK 430 508 -520 2 746 674 129 20 0 chr11 21153301 21153402 -100690454 + B1_Mus2 SINE Alu 40 142 -5 2 746 528 242 31 31 chr11 21153797 21153925 -100689931 - B4 SINE B4 -4 288 161 2 746 384 152 0 0 chr11 21154060 21154126 -100689730 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 746 297 299 0 15 chr11 21154126 21154194 -100689662 - ID4_ SINE ID -11 72 6 2 746 1136 164 215 34 chr11 21154194 21154537 -100689319 + MTD LTR MaLR 1 405 -14 2 746 1424 93 0 20 chr11 21154948 21155145 -100688711 - B2_Mm2 SINE B2 0 195 3 2 746 273 243 13 63 chr11 21155162 21155241 -100688615 - RMER10A LTR ERVL -357 85 11 2 746 649 201 113 14 chr11 21156371 21156454 -100687402 - RLTR20C LTR ERVK 0 578 492 2 746 291 113 0 0 chr11 21156454 21156507 -100687349 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 2 746 947 182 174 99 chr11 21156507 21156754 -100687102 - RLTR20C LTR ERVK -87 491 115 2 746 1397 82 38 5 chr11 21156754 21156939 -100686917 - B2_Mm2 SINE B2 -3 192 2 2 746 947 179 175 99 chr11 21156939 21157036 -100686820 - RLTR20C LTR ERVK -420 114 4 2 746 641 164 185 7 chr11 21157423 21157558 -100686298 - B2_Mm2 SINE B2 -34 161 3 2 746 7901 4 6 0 chr11 21157949 21158766 -100685090 + RLTR13B2 LTR ERVK 1 822 0 2 746 271 135 0 0 chr11 21158793 21158830 -100685026 - B1_Mur2 SINE Alu -54 95 59 2 746 1231 68 0 0 chr11 21159047 21159193 -100684663 + B1_Mm SINE Alu 2 147 0 2 746 180 77 0 0 chr11 21159193 21159219 -100684637 + (A)n Simple_repeat Simple_repeat 1 26 0 2 746 932 256 24 5 chr11 21159240 21159448 -100684408 - B3 SINE B2 -4 212 1 2 746 181 316 48 58 chr11 21159741 21159845 -100684011 - MIR SINE MIR -121 141 39 2 746 3067 147 42 45 chr11 21160044 21160091 -100683765 + RMER4B LTR ERVK 1 44 -541 2 746 1306 48 0 0 chr11 21160091 21160238 -100683618 + B1_Mus1 SINE Alu 2 148 0 2 746 3067 147 42 45 chr11 21160238 21160761 -100683095 + RMER4B LTR ERVK 45 569 -16 2 746 2836 152 26 13 chr11 21160788 21161247 -100682609 + MurERV4-int LTR ERVK 590 1054 -4206 3 746 1699 179 54 13 chr11 21161250 21161567 -100682289 + MurERV4-int LTR ERVK 1438 1767 -3493 3 746 1801 127 59 20 chr11 21161544 21161850 -100682006 + MurERV4-int LTR ERVK 4939 5256 -4 3 746 438 293 35 0 chr11 21161898 21162014 -100681842 - RMER10B LTR ERVL -10 388 269 3 746 2679 154 71 43 chr11 21162321 21162856 -100681000 + RMER4B LTR ERVK 33 582 -3 3 746 183 114 0 0 chr11 21162923 21162958 -100680898 + (T)n Simple_repeat Simple_repeat 1 35 0 3 746 1163 82 7 0 chr11 21162961 21163107 -100680749 - B1_Mm SINE Alu 0 147 1 3 746 1444 85 31 16 chr11 21163489 21163680 -100680176 + B2_Mm2 SINE B2 2 195 0 3 746 1066 316 70 5 chr11 21163812 21164213 -100679643 - MER82 DNA MER2_type -1 652 226 3 746 324 0 0 0 chr11 21164279 21164315 -100679541 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 3 746 1295 56 0 0 chr11 21164315 21164475 -100679381 - B2_Mm1t SINE B2 -33 160 1 3 746 189 0 0 0 chr11 21164978 21164999 -100678857 + (T)n Simple_repeat Simple_repeat 1 21 0 3 746 509 217 28 19 chr11 21166904 21167012 -100676844 - B1_Mur1 SINE Alu -1 148 40 3 746 676 201 0 92 chr11 21167433 21167586 -100676270 - B1_Mur1 SINE Alu 0 149 11 3 746 225 212 150 0 chr11 21167774 21167854 -100676002 - B1F SINE Alu -43 106 15 3 746 397 265 10 37 chr11 21168043 21168215 -100675641 + L1_Mur3 LINE L1 5414 5609 -564 3 746 374 143 13 0 chr11 21168460 21168537 -100675319 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3 746 238 367 93 16 chr11 21169371 21169554 -100674302 - L2c LINE L2 -281 3106 2910 3 746 243 0 45 45 chr11 21169634 21169678 -100674178 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 746 1135 68 7 0 chr11 21169683 21169829 -100674027 - B1_Mm SINE Alu 0 147 1 3 746 185 305 85 0 chr11 21169892 21169951 -100673905 - L2c LINE L2 -657 2762 2699 3 746 280 311 20 75 chr11 21170636 21170782 -100673074 + MER96 DNA hAT 37 174 -1 3 746 262 278 31 90 chr11 21171144 21171300 -100672556 + MT2B LTR ERVL 105 257 -327 3 746 613 252 24 0 chr11 21171221 21171344 -100672512 + B1F SINE Alu 23 148 -1 3 746 253 226 29 106 chr11 21171805 21171909 -100671947 + Charlie2a DNA MER1_type 1395 1490 -1371 3 746 233 197 15 0 chr11 21172058 21172124 -100671732 + CT-rich Low_complexity Low_complexity 2 68 0 3 746 315 0 0 0 chr11 21172268 21172303 -100671553 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 746 1219 106 56 0 chr11 21172425 21172604 -100671252 - B2_Mm2 SINE B2 -5 190 2 3 746 540 255 87 29 chr11 21173186 21173279 -100670577 - MER2 DNA MER2_type -126 219 123 3 746 198 0 0 0 chr11 21173279 21173301 -100670555 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3 746 540 255 87 29 chr11 21173301 21173413 -100670443 - MER2 DNA MER2_type -223 122 2 3 746 35 0 0 0 chr11 21173516 21173551 -100670305 + AT_rich Low_complexity Low_complexity 1 35 0 3 746 31 26 0 0 chr11 21173638 21173676 -100670180 + AT_rich Low_complexity Low_complexity 1 38 0 3 746 1177 61 0 0 chr11 21173954 21174101 -100669755 - B1_Mus2 SINE Alu 0 147 1 3 746 394 289 131 8 chr11 21174497 21174619 -100669237 - B1F SINE Alu -4 145 9 3 746 839 224 27 5 chr11 21174636 21174820 -100669036 - B3 SINE B2 -28 188 1 3 746 266 286 23 23 chr11 21175239 21175325 -100668531 + CT-rich Low_complexity Low_complexity 3 88 0 3 746 264 254 28 14 chr11 21175339 21175411 -100668445 - ID4_ SINE ID -9 74 2 3 746 180 0 0 0 chr11 21175573 21175593 -100668263 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 746 273 229 16 16 chr11 21175637 21175699 -100668157 - RSINE1 SINE B4 -19 146 85 3 746 22 56 0 0 chr11 21175939 21175975 -100667881 + AT_rich Low_complexity Low_complexity 1 36 0 3 746 794 164 7 7 chr11 21175984 21176125 -100667731 + B1_Mus1 SINE Alu 7 147 -1 3 746 305 345 103 7 chr11 21177087 21177233 -100666623 + MIR SINE MIR 1 160 -102 3 746 503 314 153 8 chr11 21178642 21178896 -100664960 + B4 SINE B4 2 292 0 3 746 3861 148 22 43 chr11 21180356 21180480 -100663376 - RLTR21 LTR ERVK -839 733 628 3 746 1300 89 22 6 chr11 21180480 21180661 -100663195 - B2_Mm2 SINE B2 -11 184 1 3 746 3861 148 22 43 chr11 21180661 21181277 -100662579 - RLTR21 LTR ERVK -945 627 9 3 746 210 91 0 0 chr11 21181714 21181747 -100662109 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 3 746 1155 49 21 0 chr11 21181747 21181891 -100661965 - B1_Mus2 SINE Alu 0 147 1 3 746 24 32 0 0 chr11 21182789 21182820 -100661036 + AT_rich Low_complexity Low_complexity 1 31 0 3 746 219 88 0 0 chr11 21183024 21183058 -100660798 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 746 809 186 12 0 chr11 21183057 21183229 -100660627 + (TATG)n Simple_repeat Simple_repeat 1 174 0 3 746 317 358 30 40 chr11 21183297 21183495 -100660361 - MIRb SINE MIR -14 254 59 3 746 198 71 0 0 chr11 21183692 21183720 -100660136 + (CCTG)n Simple_repeat Simple_repeat 2 29 0 3 746 233 255 10 0 chr11 21183720 21183818 -100660038 + CT-rich Low_complexity Low_complexity 2 100 0 3 746 2528 172 54 29 chr11 21184270 21184785 -100659071 - MT2A LTR ERVL -5 528 1 3 746 242 91 0 0 chr11 21184797 21184830 -100659026 - MT2A LTR ERVL -500 33 1 3 746 526 252 0 9 chr11 21184875 21184991 -100658865 - B1_Mur1 SINE Alu 0 149 35 3 746 753 150 14 41 chr11 21185173 21185319 -100658537 + B1_Mur4 SINE Alu 2 143 -7 3 746 657 254 217 12 chr11 21186261 21186607 -100657249 + Tigger2b DNA MER2_type 107 523 -203 3 746 356 263 0 25 chr11 21186679 21186770 -100657086 + ID4 SINE ID 6 94 -58 3 746 594 116 7 52 chr11 21186910 21187065 -100656791 + CT-rich Low_complexity Low_complexity 3 150 0 3 746 306 337 53 127 chr11 21187098 21187516 -100656340 - L1MC5 LINE L1 -858 7103 6717 3 746 495 248 0 0 chr11 21187698 21187815 -100656041 - B1_Mur4 SINE Alu -19 131 15 3 746 519 318 35 20 chr11 21187711 21187913 -100655943 - B4A SINE B4 -85 207 3 3 746 231 328 17 0 chr11 21188062 21188120 -100655736 - tRNA-Ala-GCY_ tRNA tRNA -7 68 10 3 746 1486 58 0 16 chr11 21188148 21188340 -100655516 + B2_Mm1t SINE B2 2 190 -3 3 746 344 278 213 20 chr11 21188530 21188732 -100655124 - Tigger7 DNA MER2_type -7 2484 2244 3 746 290 263 131 0 chr11 21188793 21188892 -100654964 - PB1D7 SINE Alu -8 112 1 3 746 332 150 12 0 chr11 21188926 21189006 -100654850 + (TATG)n Simple_repeat Simple_repeat 1 81 0 3 746 227 276 0 0 chr11 21189050 21189108 -100654748 - L1MC5 LINE L1 -2240 5642 5585 3 746 319 208 132 47 chr11 21189478 21189584 -100654272 - PB1D10 SINE Alu -1 116 2 3 746 351 232 0 0 chr11 21189639 21189708 -100654148 - ID4 SINE ID -10 73 5 3 746 311 233 141 65 chr11 21189930 21190022 -100653834 - B1F1 SINE Alu -50 99 1 3 746 505 292 69 0 chr11 21190022 21190089 -100653767 - ID SINE ID -143 81 6 3 746 242 236 146 0 chr11 21190109 21190164 -100653692 - RSINE1 SINE B4 -55 110 48 3 746 658 320 54 10 chr11 21190444 21190649 -100653207 - B3 SINE B2 0 216 3 3 746 671 258 80 22 chr11 21192590 21192816 -100651040 + B4 SINE B4 49 287 -5 3 746 248 304 111 65 chr11 21193317 21193669 -100650187 + L1ME3A LINE L1 5551 5918 -255 3 746 3689 58 14 62 chr11 21193689 21194207 -100649649 - MT2_Mm LTR ERVL 0 493 1 3 746 617 277 55 20 chr11 21194264 21194463 -100649393 + B3 SINE B2 6 211 -5 3 746 1017 185 74 10 chr11 21194699 21194901 -100648955 - B3 SINE B2 0 216 2 3 746 1236 237 65 4 chr11 21194968 21195243 -100648613 - B4 SINE B4 0 292 1 3 746 3210 41 8 0 chr11 21196155 21196548 -100647308 - MTA_Mm LTR MaLR 0 396 1 3 746 537 318 122 22 chr11 21196691 21196913 -100646943 - Tigger7 DNA MER2_type -2222 269 26 3 746 1365 220 138 5 chr11 21197474 21197844 -100646012 + MTD LTR MaLR 1 419 0 3 746 280 23 44 22 chr11 21197901 21197946 -100645910 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 3 746 313 184 48 0 chr11 21198577 21198680 -100645176 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 746 186 350 82 59 chr11 21199412 21199582 -100644274 - L2b LINE L2 -213 3162 2989 3 746 233 338 51 0 chr11 21200774 21201011 -100642845 - L1MC4 LINE L1 -4 8038 7790 3 746 650 209 21 43 chr11 21201324 21201464 -100642392 + B1_Mur2 SINE Alu 3 139 -10 3 746 240 35 0 0 chr11 21201464 21201493 -100642363 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 746 21 0 0 0 chr11 21201503 21201524 -100642332 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 329 333 120 53 chr11 21201684 21202102 -100641754 - L1ME3A LINE L1 -5 6168 5723 3 746 226 339 46 21 chr11 21202824 21203065 -100640791 - L1ME3A LINE L1 -750 5396 5150 3 746 217 217 0 0 chr11 21203262 21203308 -100640548 + CT-rich Low_complexity Low_complexity 2 47 0 3 746 1093 69 14 0 chr11 21203308 21203453 -100640403 - B1_Mus2 SINE Alu 0 147 1 3 746 253 386 55 41 chr11 21203551 21203770 -100640086 - MLT1J LTR MaLR -290 222 1 3 746 588 303 47 16 chr11 21204357 21204548 -100639308 + B4 SINE B4 87 283 -9 3 746 847 184 0 7 chr11 21204974 21205122 -100638734 - B1_Mm SINE Alu 0 147 1 3 746 188 269 12 71 chr11 21207310 21207394 -100636462 - MIR SINE MIR -16 246 168 3 746 250 307 11 64 chr11 21207408 21207502 -100636354 - MIR SINE MIR -165 97 9 3 746 3064 63 5 8 chr11 21207551 21207952 -100635904 + L1_Mus1 LINE L1 6161 6560 -7 3 746 759 176 25 74 chr11 21208229 21208431 -100635425 - B2_Mm2 SINE B2 -2 193 2 3 746 1691 39 0 0 chr11 21210253 21210460 -100633396 + L1Md_T LINE L1 6375 6581 -1 3 746 764 259 18 62 chr11 21210656 21210882 -100632974 + B3 SINE B2 1 216 0 3 746 670 252 181 0 chr11 21211617 21211855 -100632001 - Lx6 LINE L1 -19 7441 7161 3 746 440 271 120 30 chr11 21211954 21212087 -100631769 + B1F SINE Alu 3 147 -2 3 746 34 0 0 0 chr11 21212203 21212237 -100631619 + AT_rich Low_complexity Low_complexity 1 34 0 3 746 204 200 0 0 chr11 21212469 21212519 -100631337 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 746 228 227 15 0 chr11 21213476 21213542 -100630314 - L1ME1 LINE L1 -13 6171 6105 4 746 234 308 99 0 chr11 21213625 21213716 -100630140 - L1ME1 LINE L1 -229 5950 5851 4 746 236 312 199 5 chr11 21214293 21214670 -100629186 + L1MB8 LINE L1 5482 5931 -247 4 746 216 0 0 0 chr11 21215945 21215969 -100627887 + (T)n Simple_repeat Simple_repeat 1 24 0 4 746 249 255 0 0 chr11 21215980 21216031 -100627825 - RMER15 LTR ERVL -155 420 370 4 746 270 0 0 0 chr11 21217288 21217318 -100626538 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 746 295 167 21 0 chr11 21217395 21217443 -100626413 - B1_Mur4 SINE Alu -85 65 17 4 746 275 289 26 0 chr11 21217517 21217593 -100626263 + ID4 SINE ID 3 80 -3 4 746 219 281 100 11 chr11 21217593 21217607 -100626249 + ID_B1 SINE B4 3 100 -124 4 746 676 275 68 5 chr11 21217695 21217885 -100625971 - B3 SINE B2 -14 202 1 4 746 247 261 13 80 chr11 21219266 21219341 -100624515 - ID4_ SINE ID -12 71 2 4 746 391 348 45 72 chr11 21222386 21222609 -100621247 - B4 SINE B4 -6 286 70 4 746 863 267 135 15 chr11 21223724 21223983 -100619873 + ORR1D2 LTR MaLR 1 290 -80 4 746 463 184 223 0 chr11 21224624 21224727 -100619129 + B1_Mur2 SINE Alu 17 142 -7 4 746 718 253 81 11 chr11 21224727 21225131 -100618725 + L1M2 LINE L1 2241 2641 -3908 4 746 354 275 42 0 chr11 21225383 21225503 -100618353 + L1M2 LINE L1 2917 3041 -3541 4 746 2729 256 97 19 chr11 21225831 21226668 -100617188 + Lx8 LINE L1 6211 7112 -361 4 746 469 266 172 0 chr11 21226863 21227066 -100616790 + Lx8 LINE L1 7083 7320 -153 4 746 207 0 0 0 chr11 21227081 21227104 -100616752 + (T)n Simple_repeat Simple_repeat 1 23 0 4 746 598 247 73 96 chr11 21227111 21227330 -100616526 + B3A SINE B2 3 216 0 4 746 240 329 132 35 chr11 21228427 21228685 -100615171 + L2a LINE L2 3135 3417 -9 4 746 285 295 86 43 chr11 21229177 21229294 -100614562 - ID_B1 SINE B4 -11 213 92 4 746 554 264 155 12 chr11 21231221 21231382 -100612474 + B3A SINE B2 2 185 -13 4 746 25 0 0 0 chr11 21231410 21231435 -100612421 + AT_rich Low_complexity Low_complexity 1 25 0 4 746 182 267 193 37 chr11 21232715 21232824 -100611032 - MIR SINE MIR -48 214 89 4 746 356 294 76 0 chr11 21233095 21233214 -100610642 + MIRb SINE MIR 133 260 -8 4 747 21 36 0 0 chr11 21234142 21234170 -100609686 + AT_rich Low_complexity Low_complexity 1 28 0 4 747 1390 6 0 27 chr11 21235147 21235331 -100608525 + (GAA)n Simple_repeat Simple_repeat 2 180 0 4 747 1477 15 0 12 chr11 21235345 21235683 -100608173 + (GAA)n Simple_repeat Simple_repeat 1 333 0 4 747 2880 70 9 59 chr11 21236446 21236889 -100606967 - BGLII LTR ERVK 0 421 1 4 747 688 229 55 14 chr11 21236914 21237060 -100606796 + B3A SINE B2 1 152 -46 4 747 396 0 0 0 chr11 21237061 21237105 -100606751 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 747 26 0 0 0 chr11 21237192 21237218 -100606638 + AT_rich Low_complexity Low_complexity 1 26 0 4 747 525 131 0 0 chr11 21237707 21237791 -100606065 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 4 747 367 274 158 32 chr11 21238645 21238924 -100604932 + RMER10A LTR ERVL 129 442 0 4 747 266 298 115 72 chr11 21239973 21240208 -100603648 + L2 LINE L2 1907 2151 -1268 4 747 486 163 63 7 chr11 21240420 21240562 -100603294 + CT-rich Low_complexity Low_complexity 1 150 0 4 747 390 157 0 14 chr11 21240580 21240651 -100603205 + MTC LTR MaLR 6 75 -346 4 747 811 170 42 7 chr11 21240652 21240794 -100603062 + B1_Mus1 SINE Alu 1 147 -1 4 747 1625 189 59 30 chr11 21240836 21241174 -100602682 + MTC LTR MaLR 74 421 0 4 747 576 317 131 36 chr11 21241215 21241575 -100602281 + MLT1J LTR MaLR 1 394 -118 4 747 1826 123 151 55 chr11 21242831 21243176 -100600680 + ORR1C1 LTR MaLR 1 378 0 4 747 1203 275 83 12 chr11 21243176 21243596 -100600260 + Lx8 LINE L1 6281 6730 -743 4 747 2996 138 40 42 chr11 21243666 21244195 -100599661 + RLTR11A LTR ERVK 1 528 0 4 747 405 246 72 24 chr11 21244222 21244347 -100599509 + Lx8 LINE L1 6903 7033 -440 4 747 252 0 0 0 chr11 21246319 21246347 -100597509 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 747 806 164 13 7 chr11 21246583 21246736 -100597120 - URR1B DNA MER1_type 0 225 72 4 747 187 106 42 21 chr11 21247050 21247098 -100596758 + T-rich Low_complexity Low_complexity 1 49 0 4 747 715 236 14 20 chr11 21247098 21247245 -100596611 - B1_Mur1 SINE Alu 0 149 4 4 747 257 175 0 31 chr11 21247890 21247955 -100595901 + CT-rich Low_complexity Low_complexity 2 64 0 4 747 1426 264 53 92 chr11 21247981 21248512 -100595344 + RLTR18B LTR ERVK 3 512 0 4 747 213 39 0 0 chr11 21248561 21248587 -100595269 + (A)n Simple_repeat Simple_repeat 1 26 0 4 747 250 260 120 27 chr11 21248929 21249004 -100594852 + RLTR18-int LTR ERVK 2105 2186 -3175 4 747 468 245 20 27 chr11 21248996 21249143 -100594713 + RLTR18-int LTR ERVK 2530 2675 -2686 4 747 737 178 8 0 chr11 21249141 21249270 -100594586 + RLTR18-int LTR ERVK 2806 2935 -2426 4 747 2951 166 39 15 chr11 21249868 21250481 -100593375 + RLTR18-int LTR ERVK 2940 3567 -1794 4 747 2258 89 59 0 chr11 21250683 21251119 -100592737 - L1_Mus3 LINE L1 -32 6622 6103 4 747 581 84 139 0 chr11 21251119 21251230 -100592626 + B2_Mm2 SINE B2 57 188 -7 4 747 21 36 0 0 chr11 21252110 21252138 -100591718 + AT_rich Low_complexity Low_complexity 1 28 0 4 747 507 275 17 75 chr11 21252145 21252318 -100591538 - RSINE1 SINE B4 0 165 3 4 747 221 235 189 56 chr11 21252703 21252793 -100591063 - MIRc SINE MIR -51 217 116 4 747 1003 205 122 110 chr11 21254568 21254981 -100588875 + MT2A LTR ERVL 16 561 -40 4 747 297 151 0 0 chr11 21254983 21255036 -100588820 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 747 24 85 0 0 chr11 21255913 21255972 -100587884 + AT_rich Low_complexity Low_complexity 1 59 0 4 747 507 224 17 8 chr11 21256006 21256123 -100587733 + PB1D9 SINE Alu 1 118 -2 4 747 221 0 0 33 chr11 21256123 21256153 -100587703 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 747 23 54 0 0 chr11 21256413 21256450 -100587406 + AT_rich Low_complexity Low_complexity 1 37 0 4 747 429 20 0 0 chr11 21258361 21258411 -100585445 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 747 273 329 0 0 chr11 21258511 21258581 -100585275 + ID4_ SINE ID 14 83 0 4 747 483 18 0 0 chr11 21258584 21258640 -100585216 + (CCA)n Simple_repeat Simple_repeat 3 58 0 4 747 411 194 143 0 chr11 21258645 21258743 -100585113 + PB1D9 SINE Alu 2 113 -7 4 747 463 232 107 25 chr11 21259244 21259388 -100584468 - MTE2a LTR MaLR -14 405 239 4 747 767 183 30 42 chr11 21259543 21259725 -100584131 - B3 SINE B2 -5 190 5 4 747 371 265 112 0 chr11 21260414 21260512 -100583344 + PB1D10 SINE Alu 1 109 -8 4 747 249 289 88 11 chr11 21260941 21261032 -100582824 - MIR3 SINE MIR -54 154 57 4 747 594 236 8 16 chr11 21261689 21261818 -100582038 - B1_Mur4 SINE Alu 0 150 23 4 747 1191 109 18 0 chr11 21261977 21262142 -100581714 + B2_Mm2 SINE B2 11 178 -17 4 747 213 39 0 0 chr11 21262142 21262168 -100581688 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 747 297 0 0 0 chr11 21262168 21262200 -100581656 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 747 1032 192 70 0 chr11 21262969 21263156 -100580700 - B3 SINE B2 -6 210 11 4 747 419 289 39 0 chr11 21263263 21263391 -100580465 - MER5A DNA MER1_type 0 189 57 4 747 22 0 0 0 chr11 21263416 21263438 -100580418 + AT_rich Low_complexity Low_complexity 1 22 0 4 747 225 231 167 0 chr11 21264263 21264341 -100579515 - MIR3 SINE MIR -27 181 91 4 747 24 0 0 0 chr11 21265946 21265970 -100577886 + AT_rich Low_complexity Low_complexity 1 24 0 4 747 746 193 27 7 chr11 21266146 21266292 -100577564 + B1_Mur3 SINE Alu 1 149 0 4 747 31 26 0 0 chr11 21266907 21266945 -100576911 + AT_rich Low_complexity Low_complexity 1 38 0 4 747 238 377 0 0 chr11 21268046 21268115 -100575741 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 4 747 189 0 0 0 chr11 21270892 21270913 -100572943 + (CCCG)n Simple_repeat Simple_repeat 2 22 0 4 747 208 286 50 38 chr11 21272484 21272564 -100571292 + L3b LINE CR1 167 247 -235 4 747 423 0 0 0 chr11 21272962 21273009 -100570847 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 747 243 0 0 0 chr11 21273009 21273035 -100570821 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 747 795 202 163 5 chr11 21273107 21273291 -100570565 - B3 SINE B2 -3 213 1 4 747 369 256 0 0 chr11 21273977 21274059 -100569797 - ID4 SINE ID 0 83 2 4 747 1266 20 0 0 chr11 21274599 21274747 -100569109 - L1Md_T LINE L1 -367 6215 6068 4 747 3383 0 0 0 chr11 21274747 21275120 -100568736 + L1Md_T LINE L1 6210 6582 0 4 747 501 84 0 0 chr11 21275777 21275848 -100568008 + (GAAAA)n Simple_repeat Simple_repeat 2 72 0 4 747 231 246 45 15 chr11 21276561 21276627 -100567229 + Charlie17a DNA MER1_type 6 73 -146 4 747 24 53 0 0 chr11 21276678 21276716 -100567140 + AT_rich Low_complexity Low_complexity 1 38 0 4 747 867 170 14 7 chr11 21276824 21276972 -100566884 - B1_Mur4 SINE Alu 0 150 2 4 747 444 19 0 0 chr11 21276992 21277045 -100566811 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 747 637 168 0 43 chr11 21277419 21277606 -100566250 + GA-rich Low_complexity Low_complexity 2 180 0 4 747 1035 117 0 0 chr11 21277610 21277790 -100566066 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 747 654 241 93 30 chr11 21277862 21278159 -100565697 - MTEa LTR MaLR -7 372 1 4 747 418 240 64 79 chr11 21278161 21278301 -100565555 - MTEa-int LTR MaLR -15 1355 1218 4 747 1236 203 29 40 chr11 21278323 21278600 -100565256 - RLTR46 LTR ERVK -5 315 42 4 747 825 342 4 15 chr11 21278610 21278691 -100565165 - MTE-int LTR MaLR -236 1344 1265 4 747 183 80 0 0 chr11 21278691 21278716 -100565140 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4 747 825 353 17 9 chr11 21278716 21279008 -100564848 - MTE-int LTR MaLR -316 1264 883 4 747 16027 104 7 12 chr11 21279858 21283276 -100560580 + L1VL4 LINE L1 546 3942 -1941 4 747 1113 119 22 6 chr11 21283715 21283893 -100559963 - URR1A DNA MER1_type 0 226 46 4 747 305 47 23 0 chr11 21284636 21284679 -100559177 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 4 747 1213 48 0 0 chr11 21284694 21284839 -100559017 - B1_Mm SINE Alu -2 145 1 4 747 211 292 46 0 chr11 21285312 21285377 -100558479 - MIRm SINE MIR -1 275 208 5 747 326 274 0 14 chr11 21285597 21285671 -100558185 + ID SINE ID 10 82 -142 5 747 193 355 46 77 chr11 21285899 21286094 -100557762 - L2a LINE L2 -303 3123 2935 5 747 471 314 130 0 chr11 21286272 21286511 -100557345 - L2a LINE L2 -907 2512 2243 5 747 446 271 8 15 chr11 21286563 21286694 -100557162 + Lx9 LINE L1 7142 7271 -373 5 747 1604 273 72 53 chr11 21286694 21287303 -100556553 + RMER19A LTR ERVK 1 737 0 5 747 650 223 193 49 chr11 21287303 21287629 -100556227 + Lx9 LINE L1 7266 7638 -6 5 747 1157 63 0 0 chr11 21288358 21288500 -100555356 + B1_Mus1 SINE Alu 1 142 -6 5 747 2499 53 71 0 chr11 21288650 21288973 -100554883 + ORR1A1 LTR MaLR 1 346 0 5 747 421 161 92 0 chr11 21289074 21289161 -100554695 + PB1D9 SINE Alu 26 120 0 5 747 459 170 0 0 chr11 21289896 21289996 -100553860 + (TG)n Simple_repeat Simple_repeat 2 101 0 5 747 242 377 85 0 chr11 21290242 21290372 -100553484 + B1F SINE Alu 3 143 -6 5 747 227 156 0 22 chr11 21290374 21290420 -100553436 + B3 SINE B2 168 212 -4 5 747 1226 35 0 0 chr11 21290429 21290570 -100553286 + B1_Mus2 SINE Alu 1 141 -6 5 747 221 22 64 21 chr11 21290571 21290618 -100553238 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 5 747 499 298 70 43 chr11 21291178 21291434 -100552422 + MLT1I LTR MaLR 14 276 -135 5 747 565 316 62 90 chr11 21291731 21292054 -100551802 + ORR1E LTR MaLR 1 314 -45 5 747 526 270 35 35 chr11 21292106 21292248 -100551608 - ID_B1 SINE B4 -1 223 82 5 747 353 324 37 45 chr11 21292256 21292603 -100551253 + MTEa LTR MaLR 24 379 0 5 747 22 35 0 0 chr11 21292721 21292750 -100551106 + AT_rich Low_complexity Low_complexity 1 29 0 5 747 195 69 0 0 chr11 21293647 21293676 -100550180 + (T)n Simple_repeat Simple_repeat 1 29 0 5 747 3040 61 12 41 chr11 21293701 21294113 -100549743 + MTB LTR MaLR 1 400 0 5 747 2833 93 4 56 chr11 21294113 21294558 -100549298 + MTB-int LTR MaLR 1 421 -677 5 747 4794 104 5 62 chr11 21294558 21295404 -100548452 - RMER17D2 LTR ERVK 0 809 12 5 747 4134 111 21 46 chr11 21295434 21296189 -100547667 - RMER17A LTR ERVK -15 736 1 5 747 3975 124 120 27 chr11 21296205 21296974 -100546882 + MTB-int LTR MaLR 419 1258 0 5 747 3185 56 20 0 chr11 21296974 21297366 -100546490 + MTB LTR MaLR 1 400 0 5 747 557 227 125 55 chr11 21297547 21297737 -100546119 + B3A SINE B2 15 214 -2 5 747 212 342 13 27 chr11 21297786 21297861 -100545995 - ID4 SINE ID 0 83 10 5 747 354 61 0 0 chr11 21297908 21297957 -100545899 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 747 470 281 16 62 chr11 21297963 21298092 -100545764 - RSINE1 SINE B4 -2 163 41 5 747 323 105 0 17 chr11 21298106 21298164 -100545692 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 747 388 264 37 67 chr11 21298185 21298319 -100545537 - B1F2 SINE Alu -5 144 15 5 747 30 27 0 0 chr11 21298900 21298937 -100544919 + AT_rich Low_complexity Low_complexity 1 37 0 5 747 480 291 31 69 chr11 21299420 21299579 -100544277 + MER5A DNA MER1_type 2 154 -35 5 747 289 318 187 13 chr11 21299804 21299954 -100543902 - MIRb SINE MIR -76 192 17 5 747 270 0 0 0 chr11 21300076 21300106 -100543750 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 747 312 248 73 73 chr11 21300320 21300498 -100543358 - L1ME3B LINE L1 -304 5936 5759 5 747 1204 55 0 0 chr11 21301039 21301185 -100542671 - B1_Mus1 SINE Alu 0 148 3 5 747 248 296 179 52 chr11 21301618 21301875 -100541981 - MLT1C LTR MaLR -162 305 5 5 747 252 286 28 28 chr11 21302253 21302325 -100541531 + ID SINE ID 2 73 -151 5 747 27 29 0 0 chr11 21303295 21303329 -100540527 + AT_rich Low_complexity Low_complexity 1 34 0 5 747 836 118 25 16 chr11 21303516 21303767 -100540089 + (CA)n Simple_repeat Simple_repeat 1 253 0 5 747 297 307 103 26 chr11 21304533 21304650 -100539206 - L2a LINE L2 -1 3425 3300 5 747 34 0 0 0 chr11 21304960 21304994 -100538862 + AT_rich Low_complexity Low_complexity 1 34 0 5 747 287 206 16 0 chr11 21304995 21305058 -100538798 - RMER1B Other Other -538 528 465 5 747 21 36 0 0 chr11 21305135 21305163 -100538693 + AT_rich Low_complexity Low_complexity 1 28 0 5 747 946 108 7 7 chr11 21305249 21305389 -100538467 - B1_Mur4 SINE Alu 0 150 11 5 747 620 24 36 0 chr11 21307180 21307264 -100536592 + (TTATA)n Simple_repeat Simple_repeat 5 91 0 5 747 1107 268 64 92 chr11 21307905 21308295 -100535561 + MTE2a LTR MaLR 1 379 0 5 747 27 0 0 0 chr11 21308311 21308338 -100535518 + AT_rich Low_complexity Low_complexity 1 27 0 5 747 240 353 118 0 chr11 21308598 21308683 -100535173 + PB1D10 SINE Alu 3 97 -20 5 747 447 95 0 0 chr11 21308712 21308786 -100535070 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 747 249 159 0 0 chr11 21308832 21308876 -100534980 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 5 747 227 359 13 0 chr11 21308898 21308976 -100534880 - ID4_ SINE ID -3 80 2 5 747 4853 34 3 3 chr11 21309192 21309776 -100534080 - L1Md_F2 LINE L1 -15 6567 5984 5 747 13034 74 1 4 chr11 21309776 21310623 -100533233 - L1Md_F LINE L1 -2800 3083 2241 5 747 3126 14 0 0 chr11 21310623 21310969 -100532887 + ORR1A0 LTR MaLR 1 346 0 5 747 13034 66 3 2 chr11 21310969 21312847 -100531009 - L1Md_F LINE L1 -3643 2240 359 5 747 1124 304 135 88 chr11 21312858 21313562 -100530294 - MTE-int LTR MaLR -623 957 207 5 747 746 268 127 8 chr11 21313562 21313807 -100530049 - B4A SINE B4 -18 274 1 5 747 1124 304 135 88 chr11 21313807 21313981 -100529875 - MTE-int LTR MaLR -1374 206 37 5 747 350 358 8 31 chr11 21314098 21314225 -100529631 - ORR1E LTR MaLR -225 134 11 5 747 27 29 0 0 chr11 21316070 21316104 -100527752 + AT_rich Low_complexity Low_complexity 1 34 0 5 747 471 296 210 31 chr11 21316238 21316653 -100527203 + L1M5 LINE L1 3261 3749 -2397 5 747 253 256 32 95 chr11 21316656 21316751 -100527105 + MT2B LTR ERVL 157 245 -356 5 747 395 278 26 44 chr11 21316666 21316779 -100527077 + PB1D7 SINE Alu 5 115 -5 5 747 306 291 16 8 chr11 21316805 21316933 -100526923 + L1M5 LINE L1 3751 3879 -2267 5 747 654 158 250 0 chr11 21317564 21317716 -100526140 + B2_Mm2 SINE B2 2 191 -4 5 747 1016 117 55 11 chr11 21318492 21318674 -100525182 + L1Md_F2 LINE L1 6392 6581 -1 5 747 585 76 0 0 chr11 21318715 21318794 -100525062 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 747 342 0 0 0 chr11 21318794 21318831 -100525025 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 747 743 271 158 11 chr11 21319008 21319266 -100524590 - L1_Rod LINE L1 -54 5793 5494 5 747 3889 132 91 21 chr11 21319266 21319649 -100524207 - RMER6A LTR ERVK 0 756 321 5 747 423 0 0 0 chr11 21319649 21319696 -100524160 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 747 3889 132 91 21 chr11 21319696 21320016 -100523840 - RMER6A LTR ERVK -436 320 4 5 747 743 271 158 11 chr11 21320016 21320137 -100523719 - L1_Rod LINE L1 -354 5493 5359 5 747 861 238 21 104 chr11 21320157 21320515 -100523341 - L1M2 LINE L1 -1098 5045 4684 5 747 419 155 60 0 chr11 21320852 21320936 -100522920 - B1_Mm SINE Alu 0 147 59 5 747 276 331 44 22 chr11 21321412 21321548 -100522308 - MLT1D LTR MaLR -314 191 53 5 747 3197 53 5 0 chr11 21322843 21323237 -100520619 + MTA_Mm LTR MaLR 1 396 0 5 747 396 0 0 0 chr11 21323345 21323389 -100520467 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 747 246 263 13 0 chr11 21323880 21323956 -100519900 - B1_Mur1 SINE Alu -1 148 72 5 747 1042 122 5 47 chr11 21324125 21324315 -100519541 + B2_Mm2 SINE B2 3 184 -11 5 747 216 0 0 0 chr11 21324324 21324348 -100519508 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 5 747 655 263 0 62 chr11 21324559 21324646 -100519210 + RMER17C LTR ERVK 180 262 -148 5 747 510 46 0 0 chr11 21324646 21324711 -100519145 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 747 655 263 0 62 chr11 21324711 21324850 -100519006 + RMER17C LTR ERVK 263 392 -18 5 747 188 34 0 33 chr11 21325235 21325265 -100518591 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 5 747 406 228 0 29 chr11 21326003 21326107 -100517749 - ID_B1 SINE B4 0 224 124 5 747 244 326 56 56 chr11 21326107 21326146 -100517710 - B1_Mur1 SINE Alu 0 149 7 5 747 279 281 0 163 chr11 21326508 21326606 -100517250 + RSINE1 SINE B4 84 165 0 5 747 324 0 0 0 chr11 21326611 21326647 -100517209 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 747 704 298 50 59 chr11 21327151 21327575 -100516281 - L1MB5 LINE L1 -178 5996 5577 5 747 186 167 0 0 chr11 21327829 21327865 -100515991 + CT-rich Low_complexity Low_complexity 1 36 0 5 747 618 228 39 0 chr11 21327892 21328019 -100515837 - ID_B1 SINE B4 -8 216 85 5 747 971 174 56 0 chr11 21328060 21328238 -100515618 - B3 SINE B2 -27 189 2 5 747 405 0 0 0 chr11 21329466 21329511 -100514345 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 747 503 320 106 11 chr11 21329516 21329696 -100514160 - B4A SINE B4 -6 286 90 5 747 474 18 0 0 chr11 21329700 21329755 -100514101 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 747 198 91 0 0 chr11 21329789 21329822 -100514034 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 747 300 328 74 47 chr11 21331481 21331807 -100512049 - LTR33 LTR ERVL -134 381 3 5 747 255 333 40 0 chr11 21332538 21332613 -100511243 - ID4 SINE ID 0 83 6 5 747 327 213 0 0 chr11 21332785 21332860 -100510996 + GA-rich Low_complexity Low_complexity 3 77 0 5 747 227 195 95 83 chr11 21333280 21333364 -100510492 + MER104 DNA Tc2 5 89 -92 5 747 669 110 0 84 chr11 21334455 21334574 -100509282 + B1_Mur4 SINE Alu 19 127 -23 5 747 3584 33 10 0 chr11 21335089 21335481 -100508375 + MTA_Mm LTR MaLR 1 396 0 5 747 258 354 78 51 chr11 21335712 21335929 -100507927 + MIR SINE MIR 19 241 -21 5 747 1015 276 73 48 chr11 21336117 21336707 -100507149 - L1MA9 LINE L1 -38 6274 5608 5 747 1862 190 71 39 chr11 21337352 21337845 -100506011 - RLTR31A_Mm LTR ERVK -70 514 6 5 747 239 140 0 39 chr11 21338160 21338212 -100505644 + A-rich Low_complexity Low_complexity 4 53 0 5 747 186 43 0 0 chr11 21338891 21338914 -100504942 + (TCC)n Simple_repeat Simple_repeat 2 24 0 6 747 25966 85 24 6 chr11 21338936 21343555 -100500301 - Lx3_Mus LINE L1 -98 6911 2208 6 747 12099 168 78 46 chr11 21343559 21347808 -100496048 - L1Md_F2 LINE L1 0 6582 2158 6 747 1311 120 33 0 chr11 21347808 21347992 -100495864 - B2_Mm2 SINE B2 -4 191 2 6 747 12099 213 75 51 chr11 21347992 21349335 -100494521 - L1Md_F2 LINE L1 -3726 2157 813 6 747 895 111 22 15 chr11 21350171 21350303 -100493553 - B1_Mus1 SINE Alu -1 147 14 6 747 5260 68 0 15 chr11 21350303 21350958 -100492898 + L1Md_F2 LINE L1 5937 6581 -1 6 747 554 296 131 0 chr11 21351356 21351616 -100492240 + MER2 DNA MER2_type 51 344 -1 6 747 422 303 89 11 chr11 21351766 21351946 -100491910 + MIR SINE MIR 66 259 -3 6 747 326 247 28 28 chr11 21352000 21352179 -100491677 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 6 747 249 139 0 0 chr11 21352490 21352533 -100491323 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 6 747 7432 116 55 23 chr11 21352543 21352886 -100490970 + Lx3B LINE L1 5819 6162 -811 6 747 342 0 0 0 chr11 21352886 21352924 -100490932 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 747 7432 116 55 23 chr11 21352924 21353699 -100490157 + Lx3B LINE L1 6163 6973 0 6 747 7447 35 4 0 chr11 21353985 21354821 -100489035 - L1Md_T LINE L1 0 6582 5744 6 747 7103 10 0 0 chr11 21354821 21355610 -100488246 + L1Md_T LINE L1 4987 5775 -108 6 747 556 100 0 0 chr11 21356173 21356253 -100487603 + B2_Mm2 SINE B2 1 80 -115 6 747 436 358 69 5 chr11 21356302 21356490 -100487366 + MER2 DNA MER2_type 1 200 -145 6 747 183 222 111 0 chr11 21356514 21356559 -100487297 + L2 LINE L2 92 141 -3278 6 747 230 319 51 17 chr11 21356871 21356989 -100486867 + MER2 DNA MER2_type 190 311 -34 6 747 1737 180 44 30 chr11 21357205 21357572 -100486284 - Lx7 LINE L1 -635 7061 6690 6 747 339 89 107 0 chr11 21357558 21357614 -100486242 - L1_Mur3 LINE L1 -649 5231 5170 6 747 4924 118 90 14 chr11 21357620 21358562 -100485294 + RLTR13D3 LTR ERVK 1 1114 0 6 747 852 153 6 45 chr11 21358563 21358593 -100485263 - L1_Mur3 LINE L1 -739 5141 5117 6 747 2264 98 31 66 chr11 21358593 21359018 -100484838 - RMER17C LTR ERVK 0 410 1 6 747 852 153 6 45 chr11 21359018 21359144 -100484712 - L1_Mur3 LINE L1 -764 5116 4991 6 747 6030 176 62 6 chr11 21359144 21360164 -100483692 - Lx6 LINE L1 -2 7458 6382 6 747 221 169 54 40 chr11 21360165 21360239 -100483617 + (CACCC)n Simple_repeat Simple_repeat 3 77 0 6 747 2648 171 51 11 chr11 21360242 21360920 -100482936 + RMER13A LTR ERVK 1 805 -55 6 747 1127 220 50 8 chr11 21360949 21361187 -100482669 - Lx6 LINE L1 -1088 6372 6125 6 747 1957 144 6 59 chr11 21361214 21361553 -100482303 + ORR1A4 LTR MaLR 1 321 -8 6 747 242 282 35 12 chr11 21361562 21361648 -100482208 - RMER2 LTR ERV1 0 567 480 6 747 290 302 198 0 chr11 21361718 21361814 -100482042 - RSINE1 SINE B4 -43 122 8 6 747 525 254 15 23 chr11 21361825 21361958 -100481898 - ID_B1 SINE B4 -7 217 86 6 747 676 103 0 9 chr11 21362269 21362377 -100481479 - Lx2 LINE L1 0 6654 6548 6 747 26013 137 22 14 chr11 21362377 21363923 -100479933 - Lx2 LINE L1 -702 6295 4740 6 747 249 33 0 0 chr11 21363923 21363953 -100479903 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 93 26013 148 15 13 chr11 21363953 21368153 -100475703 - Lx2 LINE L1 -1147 4739 546 6 748 991 259 187 49 chr11 21368161 21368588 -100475268 - RMER2 LTR ERV1 -80 487 2 6 748 313 297 0 0 chr11 21368727 21368828 -100475028 - RNERVK23-int LTR ERVK -640 7577 7477 6 748 263 318 107 13 chr11 21368732 21368882 -100474974 - MMERGLN-int LTR ERV1 -315 7241 7078 6 748 396 0 0 0 chr11 21369355 21369399 -100474457 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 748 1262 283 43 37 chr11 21369409 21369867 -100473989 - MuRRS4-int LTR ERV1 -1041 4022 3602 6 748 597 314 11 7 chr11 21370214 21370445 -100473411 - MURVY-int LTR ERV1 -3220 4558 4225 6 748 712 328 29 43 chr11 21370537 21371077 -100472779 - MURVY-int LTR ERV1 -3793 3659 3371 6 748 33947 63 32 16 chr11 21371134 21376194 -100467662 - L1Md_F2 LINE L1 0 6582 1427 6 748 1750 31 0 0 chr11 21376194 21376385 -100467471 - B2_Mm1t SINE B2 -2 191 1 6 748 33947 147 26 40 chr11 21376385 21377414 -100466442 - L1Md_F2 LINE L1 -4457 1426 420 6 748 3067 161 38 51 chr11 21378678 21379189 -100464667 + L1VL4 LINE L1 126 833 -5469 6 748 1755 21 5 0 chr11 21379189 21379378 -100464478 + B2_Mm1t SINE B2 2 191 -2 6 748 6241 130 39 20 chr11 21379378 21380555 -100463301 + L1VL4 LINE L1 834 2021 -1538 6 748 5072 58 96 113 chr11 21380551 21380870 -100462986 + L1Md_Gf LINE L1 253 604 -5918 6 748 227 316 59 59 chr11 21380870 21380971 -100462885 + RLTR45 LTR ERVK 4 104 -378 6 748 5072 58 96 113 chr11 21380971 21381456 -100462400 + L1Md_Gf LINE L1 605 1142 -5380 6 748 6723 73 0 0 chr11 21381422 21382328 -100461528 + L1Md_T LINE L1 1203 2108 -3775 6 748 22550 22 0 0 chr11 21382328 21384914 -100458942 + L1Md_T LINE L1 3000 5586 -297 6 748 9071 32 0 0 chr11 21384914 21385910 -100457946 + L1Md_T LINE L1 5587 6582 0 6 748 354 212 30 0 chr11 21385911 21385977 -100457879 - B1_Mus2 SINE Alu -77 70 3 6 748 657 199 0 109 chr11 21385977 21386096 -100457760 - MT2B LTR ERVL -342 259 157 6 748 2705 157 55 69 chr11 21386089 21386431 -100457425 - ORR1A2-int LTR MaLR -1403 560 210 6 748 1355 86 6 6 chr11 21386431 21386607 -100457249 + B2_Mm2 SINE B2 2 177 -18 6 748 2705 157 55 69 chr11 21386607 21386832 -100457024 - ORR1A2-int LTR MaLR -1754 209 1 6 748 2440 90 6 64 chr11 21386832 21387175 -100456681 - ORR1A2 LTR MaLR 0 327 5 6 748 450 65 0 0 chr11 21387261 21387323 -100456533 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 748 263 256 98 22 chr11 21387872 21387964 -100455892 + MTD LTR MaLR 93 191 -228 6 748 3731 117 44 2 chr11 21388003 21388567 -100455289 - MT2B LTR ERVL -13 588 1 6 748 280 242 113 70 chr11 21388605 21388747 -100455109 - ORR1A3-int LTR MaLR -1323 640 493 6 748 3146 142 76 13 chr11 21388752 21389293 -100454563 - MERVL_2A-int LTR ERVL -209 5552 4978 6 748 1384 211 29 3 chr11 21389293 21389602 -100454254 - Lx5 LINE L1 -950 6100 5784 6 748 222 32 0 0 chr11 21389804 21389835 -100454021 - B3 SINE B2 -184 32 2 6 748 2058 102 64 73 chr11 21389845 21390173 -100453683 - ORR1A2 LTR MaLR 0 327 3 6 748 241 330 57 0 chr11 21390680 21390768 -100453088 - ORR1D2 LTR MaLR -243 127 35 6 748 443 316 55 37 chr11 21390796 21391013 -100452843 + ORR1D2 LTR MaLR 10 230 -140 6 748 333 315 0 7 chr11 21392034 21392178 -100451678 + (CA)n Simple_repeat Simple_repeat 2 144 0 6 748 273 250 22 22 chr11 21392319 21392409 -100451447 + L1MC LINE L1 5143 5232 -914 6 748 810 237 30 196 chr11 21392606 21392777 -100451079 - Lx6 LINE L1 0 7696 7538 6 748 1327 88 38 16 chr11 21392777 21392961 -100450895 + B2_Mm2 SINE B2 1 188 -7 6 748 1191 261 39 111 chr11 21392961 21393394 -100450462 - Lx6 LINE L1 -159 7537 6897 6 748 1433 217 23 30 chr11 21394020 21394179 -100449677 - L1_Mur3 LINE L1 -441 5439 5278 6 748 192 40 0 0 chr11 21394179 21394204 -100449652 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 748 1433 217 23 30 chr11 21394204 21394443 -100449413 - L1_Mur3 LINE L1 -603 5277 5044 6 748 314 160 0 0 chr11 21394577 21394627 -100449229 - BGLII LTR ERVK -3 418 369 6 748 312 172 0 0 chr11 21394622 21394680 -100449176 - BGLII LTR ERVK -363 58 1 6 748 359 371 67 22 chr11 21395425 21395648 -100448208 - B4A SINE B4 -18 274 42 6 748 1458 218 137 55 chr11 21395931 21396295 -100447561 - ORR1B1 LTR MaLR 0 394 1 6 748 208 319 14 0 chr11 21396297 21396366 -100447490 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 6 748 623 320 23 27 chr11 21396536 21396796 -100447060 - RMER15-int LTR ERVL -3891 1108 850 6 748 228 254 59 15 chr11 21396905 21396973 -100446883 - MER89 LTR ERV1 -483 76 6 6 748 4920 151 14 30 chr11 21397323 21398108 -100445748 + Lx2 LINE L1 6190 6969 -28 6 748 1436 96 16 0 chr11 21398108 21398295 -100445561 + B2_Mm2 SINE B2 3 192 -3 6 748 4920 151 14 30 chr11 21398295 21398323 -100445533 + Lx2 LINE L1 6970 6990 -7 6 748 2179 236 23 75 chr11 21398326 21398967 -100444889 + Lx6 LINE L1 5737 6344 -1116 6 748 541 244 7 7 chr11 21398975 21399111 -100444745 + Lx5 LINE L1 6915 7050 0 6 748 195 193 158 0 chr11 21400349 21400406 -100443450 + MIR SINE MIR 93 158 -104 6 748 399 95 40 0 chr11 21401081 21401155 -100442701 + (TC)n Simple_repeat Simple_repeat 1 77 0 6 748 453 248 8 57 chr11 21403261 21403407 -100440449 + B1_Mur2 SINE Alu 14 149 0 6 748 249 33 0 0 chr11 21406362 21406392 -100437464 + (CAG)n Simple_repeat Simple_repeat 3 32 0 6 748 358 332 59 14 chr11 21408256 21408543 -100435313 + L1M2 LINE L1 3427 3726 -2417 6 748 654 168 0 81 chr11 21408957 21409093 -100434763 + Lx4B LINE L1 6691 6815 -243 6 748 218 206 28 62 chr11 21409263 21409408 -100434448 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 6 748 3262 149 63 4 chr11 21409436 21409961 -100433895 + Lx4A LINE L1 6502 7057 -1 6 748 1038 113 14 0 chr11 21410039 21410180 -100433676 + B1_Mus1 SINE Alu 1 143 -5 6 748 606 247 26 7 chr11 21410272 21410423 -100433433 + Lx6 LINE L1 7281 7434 -26 6 748 6953 85 37 7 chr11 21412192 21413907 -100429949 - L1Md_F LINE L1 -3737 2146 378 6 748 1341 346 10 5 chr11 21413926 21414515 -100429341 - MuLV-int LTR ERV1 -4175 3431 2840 6 748 925 177 2 6 chr11 21414526 21414701 -100429155 - L1_Mur3 LINE L1 -301 5579 5401 6 748 3676 166 66 59 chr11 21415104 21415935 -100427921 - L1_Mur3 LINE L1 -452 5428 4592 6 748 27 29 0 0 chr11 21416504 21416538 -100427318 + AT_rich Low_complexity Low_complexity 1 34 0 6 748 261 167 0 0 chr11 21416592 21416634 -100427222 + B2_Mm2 SINE B2 1 42 -153 6 748 338 257 92 48 chr11 21416889 21417051 -100426805 + RLTR13D3 LTR ERVK 983 1114 0 6 748 4785 148 84 26 chr11 21417558 21418440 -100425416 + RMER19B LTR ERVK 1 902 0 6 748 1222 75 7 0 chr11 21419068 21419214 -100424642 + B1_Mus2 SINE Alu 1 147 0 6 748 647 317 7 0 chr11 21419233 21419375 -100424481 + RSINE1 SINE B4 2 144 -21 6 748 333 0 0 0 chr11 21419379 21419416 -100424440 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 748 201 39 0 0 chr11 21419417 21419443 -100424413 + (CAGAGA)n Simple_repeat Simple_repeat 4 29 0 6 748 28673 130 21 6 chr11 21420278 21426320 -100417536 - L1_Mus3 LINE L1 -1 6640 566 6 748 863 320 58 29 chr11 21426361 21426673 -100417183 - Lx8 LINE L1 -106 7367 7047 6 748 1596 171 30 9 chr11 21426702 21427032 -100416824 + RMER4B LTR ERVK 1 337 -248 6 748 2018 253 100 17 chr11 21427035 21427574 -100416282 - Lx8 LINE L1 -637 6836 6253 6 748 589 215 0 116 chr11 21427581 21427728 -100416128 - B1_Mm SINE Alu -15 132 3 6 748 561 182 13 7 chr11 21428248 21428397 -100415459 + (CA)n Simple_repeat Simple_repeat 1 150 0 6 748 451 242 11 0 chr11 21428414 21428592 -100415264 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 748 362 113 0 0 chr11 21428648 21428701 -100415155 + HAL1-3A_ME LINE L1 1976 2028 -830 6 748 242 311 170 0 chr11 21428732 21428838 -100415018 - MIRb SINE MIR -94 174 51 6 748 1689 247 96 38 chr11 21428852 21429538 -100414318 - Lx8 LINE L1 -1670 5974 5211 6 748 1343 338 37 22 chr11 21429572 21430117 -100413739 - Lx8 LINE L1 -93 7380 6828 7 748 228 67 0 0 chr11 21430193 21430223 -100413633 + (CATATA)n Simple_repeat Simple_repeat 2 31 0 7 748 1338 295 75 47 chr11 21430223 21430594 -100413262 - L1_Mur3 LINE L1 -658 5222 4836 7 748 2911 54 0 61 chr11 21430594 21430969 -100412887 - L1_Mus1 LINE L1 0 6567 6216 7 748 1341 116 16 0 chr11 21430969 21431158 -100412698 - B2_Mm2 SINE B2 -3 192 1 7 748 1338 295 75 47 chr11 21431158 21431571 -100412285 - L1_Mur3 LINE L1 -1045 4835 4416 7 748 614 252 0 0 chr11 21432098 21432213 -100411643 + B1_Mur1 SINE Alu 1 115 -34 7 748 360 0 0 0 chr11 21432213 21432253 -100411603 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 748 1223 69 0 14 chr11 21432264 21432411 -100411445 + B1_Mm SINE Alu 1 145 -2 7 748 28967 117 12 4 chr11 21432439 21436164 -100407692 - L1_Mus3 LINE L1 -3 6635 2893 7 748 453 36 0 0 chr11 21436164 21436219 -100407637 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 748 28967 134 30 14 chr11 21436219 21438640 -100405216 - L1_Mus3 LINE L1 -2991 2892 410 7 748 7548 83 18 12 chr11 21438651 21439692 -100404164 - L1_Mus3 LINE L1 0 6638 5592 7 748 342 0 0 0 chr11 21439692 21439730 -100404126 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 748 368 40 20 0 chr11 21439730 21439779 -100404077 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 748 2123 191 37 12 chr11 21439961 21440365 -100403491 + MTC LTR MaLR 3 416 -5 7 748 4974 177 50 70 chr11 21440371 21441371 -100402485 + MTC-int LTR MaLR 3 986 -272 7 748 2865 31 6 0 chr11 21441371 21441696 -100402160 - L1Md_A LINE L1 0 6582 6256 7 748 4974 177 50 70 chr11 21441696 21441803 -100402053 + MTC-int LTR MaLR 987 1088 -170 7 748 186 231 0 0 chr11 21441870 21441935 -100401921 + CT-rich Low_complexity Low_complexity 4 68 0 7 748 833 153 47 69 chr11 21442094 21442326 -100401530 + MTC-int LTR MaLR 1032 1258 0 7 748 1313 131 9 26 chr11 21442326 21442553 -100401303 + MTC LTR MaLR 1 223 -198 7 748 1861 290 89 2 chr11 21442563 21443112 -100400744 - MTE2a-int LTR MaLR -238 1342 746 7 748 1147 251 100 31 chr11 21443223 21443572 -100400284 - MTE2a-int LTR MaLR -1205 375 3 7 748 285 200 50 0 chr11 21443572 21443629 -100400227 - MTE2a LTR MaLR -17 362 303 7 748 552 292 6 19 chr11 21443704 21443861 -100399995 + MTEb LTR MaLR 136 290 -89 7 748 25 0 0 0 chr11 21443947 21443972 -100399884 + AT_rich Low_complexity Low_complexity 1 25 0 7 748 306 322 91 0 chr11 21444655 21444798 -100399058 - RSINE1 SINE B4 -7 158 3 7 748 462 18 0 0 chr11 21445453 21445508 -100398348 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 748 279 0 0 0 chr11 21445508 21445538 -100398318 + (GA)n Simple_repeat Simple_repeat 1 31 0 7 748 583 241 109 20 chr11 21445919 21446230 -100397626 + MLT2C1 LTR ERVL 1 523 -40 7 748 648 77 0 0 chr11 21446242 21446333 -100397523 + (GA)n Simple_repeat Simple_repeat 2 92 0 7 748 270 0 0 0 chr11 21447704 21447734 -100396122 + (T)n Simple_repeat Simple_repeat 1 30 0 7 748 589 270 160 9 chr11 21447912 21447965 -100395891 + L1MB7 LINE L1 5578 5630 -554 7 748 389 20 20 0 chr11 21447965 21448015 -100395841 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 748 589 270 160 9 chr11 21448015 21448305 -100395551 + L1MB7 LINE L1 5631 5973 -211 7 748 289 255 102 0 chr11 21448329 21448427 -100395429 + L1MB7 LINE L1 6051 6158 -26 7 748 351 254 58 28 chr11 21448682 21448871 -100394985 + L1MB5 LINE L1 5804 5998 -180 7 748 491 262 16 16 chr11 21448942 21449124 -100394732 + L1_Mur3 LINE L1 3672 3853 -2027 7 748 987 221 29 0 chr11 21449331 21449535 -100394321 - B3 SINE B2 -5 211 2 7 748 243 196 20 0 chr11 21449559 21449610 -100394246 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 7 748 265 235 56 45 chr11 21449633 21449722 -100394134 + MTE2a LTR MaLR 275 364 -15 7 748 343 279 44 46 chr11 21451722 21451909 -100391947 + MER34 LTR ERV1 1 181 -390 7 748 973 276 31 11 chr11 21452601 21452887 -100390969 + RMER5 LTR ERV1 204 495 -39 7 748 198 206 0 0 chr11 21453485 21453548 -100390308 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 748 486 0 0 0 chr11 21453912 21453966 -100389890 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 748 1265 201 51 14 chr11 21454016 21454309 -100389547 + RMER5 LTR ERV1 215 518 -16 7 748 809 196 184 6 chr11 21454671 21454845 -100389011 - B3 SINE B2 -6 210 6 7 748 1128 95 0 0 chr11 21455771 21455918 -100387938 - B1_Mus2 SINE Alu 0 147 1 7 748 252 0 0 0 chr11 21456397 21456425 -100387431 + (T)n Simple_repeat Simple_repeat 1 28 0 7 748 749 253 84 6 chr11 21456514 21456693 -100387163 - ID_B1 SINE B4 -6 218 26 7 748 250 218 34 22 chr11 21458354 21458443 -100385413 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 748 620 229 35 21 chr11 21458749 21458945 -100384911 - B3A SINE B2 0 195 1 7 748 519 277 112 37 chr11 21460407 21460621 -100383235 - Tigger5 DNA MER2_type -29 2377 2148 7 748 237 321 104 22 chr11 21461864 21461998 -100381858 + MIRb SINE MIR 70 214 -54 7 748 274 167 48 48 chr11 21463294 21463357 -100380499 - MER5A1 DNA MER1_type -1 165 103 7 748 366 207 0 0 chr11 21464507 21464606 -100379250 + (TA)n Simple_repeat Simple_repeat 2 100 0 7 748 351 0 0 0 chr11 21464606 21464645 -100379211 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 748 366 207 0 0 chr11 21464645 21464656 -100379200 + (TA)n Simple_repeat Simple_repeat 1 11 0 7 748 233 321 54 18 chr11 21464793 21464904 -100378952 - MIR3 SINE MIR -48 160 46 7 748 322 299 0 0 chr11 21467239 21467306 -100376550 - B1_Mus2 SINE Alu -78 69 3 7 748 233 358 0 0 chr11 21467247 21467314 -100376542 - ID_B1 SINE B4 -82 142 76 7 748 1215 107 0 22 chr11 21467315 21467496 -100376360 - B2_Mm2 SINE B2 -5 190 14 7 748 21 36 0 0 chr11 21467506 21467534 -100376322 + AT_rich Low_complexity Low_complexity 1 28 0 7 748 638 189 125 7 chr11 21467534 21467678 -100376178 - RSINE1 SINE B4 -1 164 4 7 748 220 179 26 0 chr11 21468916 21468955 -100374901 + B1_Mus1 SINE Alu 1 40 -108 7 748 240 100 0 0 chr11 21469102 21469142 -100374714 + (A)n Simple_repeat Simple_repeat 1 40 0 7 748 241 284 81 18 chr11 21469153 21469264 -100374592 + PB1D9 SINE Alu 3 120 0 7 748 234 91 0 0 chr11 21469996 21470029 -100373827 + (T)n Simple_repeat Simple_repeat 1 33 0 7 748 679 159 109 15 chr11 21470029 21470166 -100373690 - B1F1 SINE Alu 0 149 8 7 748 2266 160 36 34 chr11 21472964 21473379 -100370477 - MTC LTR MaLR 0 421 6 7 748 525 282 153 82 chr11 21473941 21474281 -100369575 + MTD LTR MaLR 1 364 -55 7 748 825 123 0 32 chr11 21474465 21474591 -100369265 + RMER19B LTR ERVK 145 266 -636 7 748 263 283 22 0 chr11 21474794 21474886 -100368970 + (TG)n Simple_repeat Simple_repeat 2 95 0 7 748 3883 124 95 19 chr11 21474914 21475557 -100368299 + RMER19B LTR ERVK 1 692 -210 7 748 435 264 64 6 chr11 21475909 21476065 -100367791 - Lx8 LINE L1 -530 6943 6779 7 748 378 317 29 0 chr11 21476441 21476545 -100367311 - U6 snRNA snRNA 0 107 1 7 748 1653 118 47 91 chr11 21476717 21477015 -100366841 + RMER19B LTR ERVK 3 287 -615 7 748 1301 170 131 11 chr11 21477021 21477295 -100366561 - ORR1B1 LTR MaLR -86 308 2 7 748 290 186 37 47 chr11 21477299 21477406 -100366450 - Ricksha_a DNA MuDR -664 517 412 7 748 370 222 33 0 chr11 21477956 21478046 -100365810 - Ricksha_a DNA MuDR -1081 100 8 7 748 394 219 155 17 chr11 21478103 21478219 -100365637 + MLT1A1 LTR MaLR 274 405 -3 7 748 780 242 67 0 chr11 21478456 21478650 -100365206 - MTEa LTR MaLR -11 368 162 7 748 380 298 98 33 chr11 21478760 21478944 -100364912 - L1MC4 LINE L1 -396 7646 7451 7 748 4660 152 46 24 chr11 21479204 21479605 -100364251 - L1_Mur3 LINE L1 -1080 4800 4401 7 748 1163 115 43 11 chr11 21479605 21479790 -100364066 - B2_Mm2 SINE B2 -3 192 2 7 748 4660 152 46 24 chr11 21479790 21480350 -100363506 - L1_Mur3 LINE L1 -1480 4400 3818 7 748 247 246 8 90 chr11 21480368 21480502 -100363354 - L1_Mur3 LINE L1 -7431 297 175 7 748 186 43 0 0 chr11 21480504 21480527 -100363329 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 748 180 0 0 0 chr11 21480528 21480548 -100363308 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 7 748 216 344 11 0 chr11 21480600 21480690 -100363166 + CT-rich Low_complexity Low_complexity 3 93 0 7 748 280 194 88 15 chr11 21480853 21480921 -100362935 - ID4 SINE ID -9 74 2 7 748 4747 157 94 8 chr11 21481127 21481958 -100361898 + RMER19B LTR ERVK 1 902 0 7 748 736 188 14 27 chr11 21482315 21482463 -100361393 + B1_Mur1 SINE Alu 4 149 0 7 748 21 0 0 0 chr11 21482999 21483020 -100360836 + AT_rich Low_complexity Low_complexity 1 21 0 7 748 35 24 0 0 chr11 21483170 21483212 -100360644 + AT_rich Low_complexity Low_complexity 1 42 0 7 748 872 350 108 28 chr11 21483969 21484012 -100359844 + MER21B LTR ERV1 40 81 -782 7 748 453 55 31 71 chr11 21484012 21484110 -100359746 - Lx3_Mus LINE L1 0 7009 6916 7 748 872 350 108 28 chr11 21484110 21484463 -100359393 + MER21B LTR ERV1 82 468 -395 7 748 235 150 16 16 chr11 21484596 21484657 -100359199 + CT-rich Low_complexity Low_complexity 5 65 0 7 748 559 173 8 23 chr11 21484731 21484861 -100358995 + C-rich Low_complexity Low_complexity 3 130 0 7 748 8437 122 36 4 chr11 21484959 21486690 -100357166 - Lx2B LINE L1 0 7000 5216 7 748 462 94 94 0 chr11 21486687 21486767 -100357089 + Lx2A1 LINE L1 5964 6051 -957 7 748 7071 106 54 9 chr11 21486767 21487860 -100355996 + Lx2A1 LINE L1 5864 7005 -3 7 748 650 190 0 33 chr11 21487865 21487985 -100355871 - MT2A LTR ERVL -415 118 3 7 748 399 246 106 0 chr11 21488000 21488199 -100355657 - L1M2 LINE L1 -2370 3773 3500 7 748 21 0 0 0 chr11 21488245 21488266 -100355590 + AT_rich Low_complexity Low_complexity 1 21 0 7 748 562 266 108 21 chr11 21488739 21489127 -100354729 - L1M2 LINE L1 -2709 3434 3013 7 748 301 281 135 5 chr11 21489316 21489509 -100354347 - L1M2 LINE L1 -3266 2877 2660 7 748 1688 243 21 55 chr11 21490346 21490782 -100353074 - ORR1D2-int LTR MaLR 0 1370 950 7 748 278 221 45 125 chr11 21490795 21490883 -100352973 - ORR1D2 LTR MaLR -124 246 164 7 748 207 125 0 0 chr11 21490898 21490938 -100352918 + (T)n Simple_repeat Simple_repeat 1 40 0 7 748 3294 36 5 10 chr11 21490961 21491359 -100352497 - MTA_Mm LTR MaLR 0 396 1 7 748 8875 41 8 2 chr11 21491359 21492450 -100351406 - MTA_Mm-int LTR MaLR 0 1098 1 7 748 3308 41 5 0 chr11 21492450 21492844 -100351012 - MTA_Mm LTR MaLR 0 396 1 7 748 225 0 0 0 chr11 21493378 21493403 -100350453 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7 748 231 191 0 0 chr11 21494031 21494094 -100349762 + CT-rich Low_complexity Low_complexity 2 64 0 7 748 1633 113 59 36 chr11 21494094 21494416 -100349440 - Lx3_Mus LINE L1 -884 6174 5865 7 748 369 0 0 0 chr11 21494678 21494719 -100349137 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 7 748 275 200 71 0 chr11 21494721 21494791 -100349065 - Lx6 LINE L1 -26 7434 7360 8 748 280 330 9 0 chr11 21494805 21494911 -100348945 - Lx5 LINE L1 -708 6342 6236 8 748 493 204 17 217 chr11 21495122 21495318 -100348538 - Lx6 LINE L1 -1269 6191 6043 8 93 2400 173 83 55 chr11 21495318 21495886 -100347970 - RLTR31A_Mm LTR ERVK 0 584 1 8 749 493 204 17 217 chr11 21495886 21495989 -100347867 - Lx6 LINE L1 -1418 6042 5952 8 749 9335 142 24 14 chr11 21496027 21496952 -100346904 - L1_Mur1 LINE L1 -2840 3046 2109 8 749 3163 47 125 2 chr11 21496952 21497375 -100346481 + IAPLTR2_Mm LTR ERVK 1 475 0 8 749 9335 149 39 13 chr11 21497375 21498685 -100345171 - L1_Mur1 LINE L1 -3778 2108 760 8 749 442 258 233 38 chr11 21498789 21499128 -100344728 + L1MC4 LINE L1 6670 7074 -968 8 749 2640 181 93 103 chr11 21499163 21500000 -100343856 + ORR1A3-int LTR MaLR 133 961 -1002 8 749 6356 102 22 44 chr11 21500004 21501024 -100342832 + ORR1A3-int LTR MaLR 966 1963 0 1 749 2285 95 3 3 chr11 21501024 21501342 -100342514 + ORR1A3 LTR MaLR 1 318 -8 1 749 777 199 147 27 chr11 21501346 21501605 -100342251 - L1_Rod LINE L1 -283 5564 5275 2 749 226 320 13 0 chr11 21501721 21501796 -100342060 + L1MC4 LINE L1 7598 7673 -369 3 749 282 224 30 10 chr11 21502015 21502114 -100341742 + L1MC4 LINE L1 7940 8040 -2 4 749 318 106 0 0 chr11 21503004 21503051 -100340805 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 749 441 346 15 0 chr11 21503075 21503208 -100340648 - RSINE1 SINE B4 -28 137 3 6 749 37 23 0 0 chr11 21503222 21503266 -100340590 + AT_rich Low_complexity Low_complexity 1 44 0 7 749 189 121 0 0 chr11 21503311 21503344 -100340512 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 8 749 2133 237 131 30 chr11 21503354 21504115 -100339741 - Lx8 LINE L1 -244 7229 6392 9 749 265 184 0 20 chr11 21504118 21504168 -100339688 - RLTR25B LTR ERVK 0 1028 980 1 749 3391 138 59 39 chr11 21504173 21504814 -100339042 - RLTR25B LTR ERVK -217 811 158 1 749 494 237 7 0 chr11 21504859 21504998 -100338858 + (TA)n Simple_repeat Simple_repeat 1 140 0 1 749 366 61 0 0 chr11 21504998 21505047 -100338809 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 749 539 233 40 40 chr11 21505047 21505172 -100338684 - RLTR25B LTR ERVK -903 125 1 1 749 554 313 0 12 chr11 21505192 21505357 -100338499 - Lx8 LINE L1 -1085 6388 6226 9 749 243 0 0 0 chr11 21505429 21505456 -100338400 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 749 543 246 120 23 chr11 21505456 21505589 -100338267 - B3 SINE B2 -70 146 1 1 749 283 328 75 50 chr11 21505971 21506212 -100337644 - Lx9 LINE L1 -1623 6021 5775 1 749 1061 87 23 0 chr11 21506243 21506415 -100337441 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 1 749 27 0 0 0 chr11 21506415 21506442 -100337414 + AT_rich Low_complexity Low_complexity 1 27 0 1 749 17783 68 26 5 chr11 21506462 21508153 -100335703 - Lx3_Mus LINE L1 -2 7007 5281 1 749 3281 48 2 0 chr11 21508153 21508548 -100335308 - MTA_Mm LTR MaLR 0 396 1 1 749 17783 76 6 7 chr11 21508548 21510527 -100333329 - Lx3_Mus LINE L1 -606 5280 3306 1 749 3466 57 4 0 chr11 21510516 21510973 -100332883 - L1Md_F2 LINE L1 -503 6079 5621 2 749 273 128 0 0 chr11 21510965 21511012 -100332844 - Lx3_Mus LINE L1 -6924 60 14 1 749 748 152 11 103 chr11 21511012 21511196 -100332660 - Lx LINE L1 -14 6640 6474 2 749 332 248 65 123 chr11 21511521 21511659 -100332197 - B4A SINE B4 0 292 163 2 749 454 212 0 0 chr11 21511703 21511783 -100332073 - B4A SINE B4 -207 85 6 2 749 272 372 0 0 chr11 21511858 21511936 -100331920 + ID4 SINE ID 2 79 -4 2 749 303 339 18 0 chr11 21511965 21512077 -100331779 + PB1D10 SINE Alu 2 115 -2 2 749 253 196 0 19 chr11 21512302 21512354 -100331502 + MTE2a LTR MaLR 11 61 -318 2 749 339 293 210 43 chr11 21512765 21513065 -100330791 - L1MEg LINE L1 -4704 1380 1031 2 749 7430 58 2 6 chr11 21513492 21514578 -100329278 - L1_Mus2 LINE L1 0 6566 5485 2 749 249 33 0 0 chr11 21514953 21514983 -100328873 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2 749 381 43 0 0 chr11 21515510 21515557 -100328299 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 749 680 286 169 28 chr11 21515581 21515836 -100328020 + B4 SINE B4 2 292 0 3 749 32 43 0 0 chr11 21516478 21516524 -100327332 + AT_rich Low_complexity Low_complexity 1 46 0 3 749 355 277 17 122 chr11 21516538 21516607 -100327249 + MT2B LTR ERVL 103 152 -449 3 749 918 144 7 33 chr11 21516607 21516758 -100327098 + B1_Mur2 SINE Alu 2 148 -1 3 749 1153 29 15 0 chr11 21516943 21517080 -100326776 + B1_Mur4 SINE Alu 3 141 -9 3 749 298 0 23 23 chr11 21517080 21517123 -100326733 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 749 231 146 0 0 chr11 21517331 21517372 -100326484 + (T)n Simple_repeat Simple_repeat 1 41 0 3 749 35 41 0 0 chr11 21518039 21518088 -100325768 + AT_rich Low_complexity Low_complexity 1 49 0 3 749 476 327 185 50 chr11 21518221 21518540 -100325316 + LFSINE_Vert SINE SINE 98 459 0 3 749 378 107 0 0 chr11 21518784 21518840 -100325016 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 749 410 0 20 0 chr11 21519216 21519266 -100324590 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 749 4162 118 8 20 chr11 21520229 21521335 -100322521 + L1VL4 LINE L1 198 1286 -2273 4 749 19311 158 11 18 chr11 21521346 21524232 -100319624 + Lx LINE L1 2228 5113 -773 4 749 1168 68 0 0 chr11 21524232 21524379 -100319477 + B1_Mus2 SINE Alu 1 147 0 4 749 19311 128 38 18 chr11 21524379 21525912 -100317944 + Lx LINE L1 5114 6649 -5 4 749 646 270 23 0 chr11 21525960 21526134 -100317722 + B3A SINE B2 5 182 -16 4 749 189 132 0 0 chr11 21526476 21526514 -100317342 + (T)n Simple_repeat Simple_repeat 1 38 0 4 749 30 27 0 0 chr11 21526840 21526877 -100316979 + AT_rich Low_complexity Low_complexity 1 37 0 4 749 23 0 0 0 chr11 21527165 21527188 -100316668 + AT_rich Low_complexity Low_complexity 1 23 0 4 749 1752 169 189 41 chr11 21527188 21527508 -100316348 - Lx3C LINE L1 -3 6973 6609 4 749 234 0 0 0 chr11 21527508 21527534 -100316322 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 749 5667 106 23 8 chr11 21527534 21528371 -100315485 - Lx2 LINE L1 -9 6988 6140 5 749 1752 169 189 41 chr11 21528371 21528488 -100315368 - Lx3C LINE L1 -368 6608 6471 4 749 812 322 30 7 chr11 21529127 21529396 -100314460 - B4A SINE B4 -14 278 4 5 749 369 0 0 0 chr11 21529509 21529550 -100314306 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 749 719 249 111 94 chr11 21529629 21530098 -100313758 - RMER16-int LTR ERVK -3100 3037 2561 5 749 545 298 231 10 chr11 21530106 21530401 -100313455 - RLTR9A LTR ERVK -8 360 1 5 749 1819 159 124 64 chr11 21530941 21531584 -100312272 - RMER16-int LTR ERVK -4427 979 255 5 749 306 0 0 0 chr11 21531668 21531702 -100312154 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5 749 234 136 0 0 chr11 21531931 21531975 -100311881 + (T)n Simple_repeat Simple_repeat 1 44 0 5 749 350 290 94 47 chr11 21532053 21532223 -100311633 - RLTR9A LTR ERVK 0 368 191 5 749 255 242 44 29 chr11 21532212 21532280 -100311576 - RLTR9A LTR ERVK -299 69 1 5 749 912 228 7 41 chr11 21532460 21532730 -100311126 - RLTR42-int LTR ERVK -3399 2123 1863 5 749 23 33 0 0 chr11 21532934 21532964 -100310892 + AT_rich Low_complexity Low_complexity 1 30 0 5 749 539 201 14 132 chr11 21532964 21533176 -100310680 - MTC-int LTR MaLR -111 1147 961 6 749 2434 168 40 6 chr11 21533177 21533681 -100310175 - RMER17D2 LTR ERVK 0 809 289 6 749 4450 148 83 52 chr11 21533681 21534709 -100309147 - RMER17A-int LTR ERVK -201 1527 468 6 749 294 98 0 0 chr11 21534867 21534918 -100308938 + (G)n Simple_repeat Simple_repeat 1 51 0 6 749 207 0 0 0 chr11 21534918 21534941 -100308915 + (GA)n Simple_repeat Simple_repeat 1 23 0 6 749 672 109 73 0 chr11 21534948 21535058 -100308798 - RMER17A-int LTR ERVK -1608 120 3 6 749 1447 210 150 26 chr11 21535269 21535729 -100308127 - Lx6 LINE L1 -27 7669 6892 6 749 315 0 0 0 chr11 21535744 21535779 -100308077 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 749 381 210 210 0 chr11 21535789 21535927 -100307929 - Lx6 LINE L1 -1301 6159 5993 6 749 310 143 110 0 chr11 21535934 21536025 -100307831 - L1_Mur3 LINE L1 -6447 1265 1165 6 749 234 176 204 21 chr11 21537433 21537526 -100306330 - Lx8 LINE L1 0 7473 7364 6 749 350 202 32 56 chr11 21537874 21538000 -100305856 - Lx8 LINE L1 -1 7472 7350 6 749 186 191 0 0 chr11 21538226 21538268 -100305588 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 749 387 0 0 0 chr11 21538432 21538475 -100305381 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 749 417 357 44 20 chr11 21539918 21540167 -100303689 + L1MC LINE L1 5315 5569 -2313 7 749 2585 119 19 34 chr11 21540515 21540983 -100302873 - Lx2B LINE L1 -708 6292 5832 7 749 305 236 48 60 chr11 21540983 21541150 -100302706 + RMER17A LTR ERVK 304 468 -283 7 749 912 104 45 79 chr11 21541150 21541328 -100302528 - L1_Mur1 LINE L1 -299 5587 5416 7 749 3934 139 5 20 chr11 21541328 21541987 -100301869 + Lx2B LINE L1 6350 6998 -2 7 749 405 0 0 0 chr11 21542436 21542481 -100301375 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 749 311 133 240 0 chr11 21542487 21542562 -100301294 - B3 SINE B2 -123 93 1 7 749 1030 254 91 19 chr11 21542743 21543008 -100300848 - B4 SINE B4 -8 284 1 7 749 643 304 66 92 chr11 21543138 21543486 -100300370 - ORR1E LTR MaLR -10 349 11 7 749 394 238 149 24 chr11 21543691 21543859 -100299997 - MIR SINE MIR -46 216 28 8 749 21 0 0 0 chr11 21544039 21544060 -100299796 + AT_rich Low_complexity Low_complexity 1 21 0 8 749 189 94 0 0 chr11 21544175 21544207 -100299649 + (T)n Simple_repeat Simple_repeat 1 32 0 8 749 1074 102 11 6 chr11 21544741 21544918 -100298938 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 8 749 628 228 7 35 chr11 21545343 21545484 -100298372 + B1_Mur2 SINE Alu 1 137 -12 8 749 316 40 0 39 chr11 21545487 21545539 -100298317 + (TAA)n Simple_repeat Simple_repeat 2 51 0 8 749 324 229 0 0 chr11 21547933 21548016 -100295840 + (TA)n Simple_repeat Simple_repeat 1 83 0 8 749 198 128 0 0 chr11 21548704 21548743 -100295113 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 8 749 634 285 127 69 chr11 21548764 21549039 -100294817 - B4A SINE B4 0 292 2 8 749 7809 50 0 0 chr11 21549169 21550318 -100293538 - L1_Mus1 LINE L1 0 6567 5419 8 749 2462 102 0 0 chr11 21550318 21550681 -100293175 + L1_Mm LINE L1 4588 4950 -933 9 749 293 164 0 29 chr11 21550903 21550972 -100292884 + CT-rich Low_complexity Low_complexity 1 67 0 9 749 24 32 0 0 chr11 21551477 21551508 -100292348 + AT_rich Low_complexity Low_complexity 1 31 0 9 749 296 260 28 19 chr11 21554380 21554486 -100289370 - L1ME3A LINE L1 -8 6165 6059 9 749 29193 27 0 0 chr11 21554704 21559001 -100284855 - L1Md_T LINE L1 0 6582 2314 9 749 476 303 87 27 chr11 21561480 21561629 -100282227 - RSINE1 SINE B4 0 165 8 9 749 204 227 15 29 chr11 21561981 21562049 -100281807 + (TA)n Simple_repeat Simple_repeat 1 67 0 9 749 376 219 14 0 chr11 21562160 21562233 -100281623 - ID4 SINE ID -9 74 1 9 749 21 36 0 0 chr11 21562233 21562261 -100281595 + AT_rich Low_complexity Low_complexity 1 28 0 9 749 3743 219 32 49 chr11 21562378 21563334 -100280522 - Lx6 LINE L1 -11 7449 6510 9 749 540 175 125 10 chr11 21563389 21563493 -100280363 - PB1D9 SINE Alu -3 117 2 1 749 24 0 0 0 chr11 21564856 21564880 -100278976 + AT_rich Low_complexity Low_complexity 1 24 0 1 749 238 167 62 0 chr11 21564931 21564979 -100278877 - MER3 DNA MER1_type -158 51 1 1 749 278 26 0 25 chr11 21566599 21566639 -100277217 + (TTGTG)n Simple_repeat Simple_repeat 1 39 0 1 749 398 326 34 105 chr11 21566672 21566881 -100276975 - B4A SINE B4 -15 277 84 1 749 620 310 90 50 chr11 21567862 21568090 -100275766 - Lx9 LINE L1 -172 7472 7232 1 749 1594 26 16 0 chr11 21568090 21568280 -100275576 - B2_Mm1t SINE B2 0 193 1 1 749 620 310 90 50 chr11 21568280 21568553 -100275303 - Lx9 LINE L1 -413 7231 6951 1 749 301 55 26 53 chr11 21569237 21569313 -100274543 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 1 749 411 268 143 13 chr11 21569753 21569984 -100273872 - Lx8 LINE L1 0 7473 7213 1 749 804 133 0 37 chr11 21569986 21570118 -100273738 + polypyrimidine Low_complexity Low_complexity 53 180 0 1 749 939 139 0 0 chr11 21570118 21570298 -100273558 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 749 804 133 0 37 chr11 21570298 21570352 -100273504 + polypyrimidine Low_complexity Low_complexity 1 52 0 1 749 564 170 0 0 chr11 21570354 21570489 -100273367 + CT-rich Low_complexity Low_complexity 2 136 0 1 749 481 343 112 3 chr11 21570489 21570802 -100273054 - Lx8 LINE L1 -247 7226 6880 1 749 260 271 19 94 chr11 21571710 21571816 -100272040 - PB1D10 SINE Alu -8 109 12 1 749 225 114 27 0 chr11 21571817 21571860 -100271996 - MIR SINE MIR -108 160 113 1 749 1291 217 28 91 chr11 21572434 21572503 -100271353 - ORR1D1 LTR MaLR -3 371 303 1 749 243 0 0 0 chr11 21572503 21572530 -100271326 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 1 749 1291 217 28 91 chr11 21572530 21572856 -100271000 - ORR1D1 LTR MaLR -72 302 2 1 749 432 0 0 0 chr11 21572978 21573026 -100270830 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 749 1085 187 0 62 chr11 21573368 21573579 -100270277 + B3A SINE B2 1 198 0 1 749 1429 73 9 35 chr11 21575441 21575667 -100268189 - L1_Mus3 LINE L1 -5 6633 6414 1 749 1909 187 15 0 chr11 21575670 21576061 -100267795 - L1_Mur2 LINE L1 -886 4991 4595 1 749 8778 114 26 19 chr11 21576064 21578015 -100265841 + Lx2A1 LINE L1 5027 6997 -11 1 749 365 293 85 37 chr11 21578358 21578546 -100265310 - MamRep605 Unknown Unknown -214 662 466 1 749 1978 212 14 33 chr11 21578928 21579357 -100264499 + MTC LTR MaLR 1 421 0 1 749 231 211 123 0 chr11 21579366 21579423 -100264433 - MER20 DNA MER1_type -155 64 1 1 749 7253 64 11 2 chr11 21579945 21581108 -100262748 - L1_Mus2 LINE L1 -1 6565 5395 1 749 751 166 98 0 chr11 21581211 21581374 -100262482 + URR1A DNA MER1_type 45 223 -3 1 749 437 282 27 9 chr11 21581874 21581985 -100261871 - B4A SINE B4 -177 115 3 1 749 180 231 57 71 chr11 21582146 21582216 -100261640 + L2c LINE L2 3318 3386 -1 1 749 186 43 0 0 chr11 21582369 21582392 -100261464 + (T)n Simple_repeat Simple_repeat 1 23 0 1 749 522 0 0 0 chr11 21582693 21582751 -100261105 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 749 747 243 26 31 chr11 21585197 21585392 -100258464 + RMER30 DNA MER1_type 2 195 -7 1 749 543 338 116 37 chr11 21585616 21586046 -100257810 + L2a LINE L2 2961 3424 -2 1 749 290 340 29 82 chr11 21586500 21586670 -100257186 + RSINE1 SINE B4 5 165 0 1 749 299 264 262 27 chr11 21586850 21587033 -100256823 - MIR SINE MIR -32 230 5 1 749 219 280 66 13 chr11 21587324 21587400 -100256456 + L3 LINE CR1 4292 4371 -118 1 749 649 318 0 49 chr11 21587433 21587613 -100256243 - ID_B1 SINE B4 -4 220 50 1 749 455 301 61 27 chr11 21587613 21587760 -100256096 + RSINE1 SINE B4 2 153 -12 1 749 290 228 0 0 chr11 21587819 21587876 -100255980 - ID SINE ID -164 60 4 1 749 196 381 33 33 chr11 21590255 21590377 -100253479 - MIRb SINE MIR -104 164 43 1 749 21 0 0 0 chr11 21591150 21591171 -100252685 + AT_rich Low_complexity Low_complexity 1 21 0 1 749 30 0 0 0 chr11 21591231 21591261 -100252595 + AT_rich Low_complexity Low_complexity 1 30 0 1 749 376 240 115 0 chr11 21591380 21591476 -100252380 - PB1D9 SINE Alu -12 108 2 1 749 182 308 195 24 chr11 21595506 21595629 -100248227 + MIRb SINE MIR 13 156 -112 1 749 204 67 0 0 chr11 21596205 21596235 -100247621 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 749 373 333 0 0 chr11 21596260 21596273 -100247583 - ID_B1 SINE B4 -62 162 110 1 749 375 233 0 0 chr11 21596273 21596341 -100247515 - B1F1 SINE Alu -49 68 1 1 749 214 350 60 30 chr11 21596437 21596537 -100247319 + MIR3 SINE MIR 64 166 -42 1 749 254 337 0 59 chr11 21597069 21597154 -100246702 - ID4 SINE ID -2 81 2 1 749 23 0 0 0 chr11 21597596 21597619 -100246237 + AT_rich Low_complexity Low_complexity 1 23 0 1 749 356 253 152 25 chr11 21597716 21597874 -100245982 + MER5B DNA MER1_type 1 178 0 1 749 402 264 138 7 chr11 21598311 21598456 -100245400 + B4A SINE B4 34 197 -95 1 749 235 230 81 30 chr11 21598883 21599015 -100244841 - B1F SINE Alu -1 149 8 1 749 429 289 198 55 chr11 21599613 21600088 -100243768 - L1MC5 LINE L1 -536 7425 6883 1 749 235 235 36 24 chr11 21600181 21600264 -100243592 - L1MC5 LINE L1 -970 6815 6732 1 749 22 70 0 0 chr11 21600623 21600666 -100243190 + AT_rich Low_complexity Low_complexity 1 43 0 1 749 362 194 213 0 chr11 21600824 21600979 -100242877 - L1MC LINE L1 -1177 4969 4782 1 749 21 36 0 0 chr11 21601238 21601266 -100242590 + AT_rich Low_complexity Low_complexity 1 28 0 1 749 435 216 0 0 chr11 21601271 21601382 -100242474 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 749 593 234 55 61 chr11 21601382 21601546 -100242310 - RSINE1 SINE B4 0 165 3 1 749 1372 212 171 8 chr11 21602029 21602391 -100241465 + MTC LTR MaLR 1 421 0 1 749 258 106 0 0 chr11 21602468 21602515 -100241341 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 749 262 312 0 0 chr11 21602645 21602709 -100241147 + ID2 SINE ID 3 66 -17 1 749 378 0 0 0 chr11 21602712 21602754 -100241102 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 749 1020 119 0 0 chr11 21603584 21603752 -100240104 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 749 237 269 45 0 chr11 21603762 21603829 -100240027 - ID_B1 SINE B4 -69 155 86 1 749 30 27 0 0 chr11 21603990 21604027 -100239829 + AT_rich Low_complexity Low_complexity 1 37 0 1 749 1154 41 14 7 chr11 21604027 21604173 -100239683 - B1_Mm SINE Alu 0 147 1 1 749 234 366 18 9 chr11 21605652 21605765 -100238091 + B3A SINE B2 2 115 -83 1 749 233 178 0 88 chr11 21605871 21605951 -100237905 + T-rich Low_complexity Low_complexity 5 77 0 1 749 197 33 0 32 chr11 21606134 21606165 -100237691 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 1 749 2436 116 80 26 chr11 21606686 21607112 -100236744 + Lx2B LINE L1 6548 6996 -4 1 749 565 237 48 21 chr11 21607162 21607405 -100236451 - MTEb LTR MaLR 0 379 72 1 749 835 265 145 25 chr11 21607408 21607725 -100236131 - MTE2a LTR MaLR -3 376 22 1 749 420 238 9 47 chr11 21607740 21607846 -100236010 - MTE-int LTR MaLR -1174 406 305 1 749 230 333 28 62 chr11 21607858 21608002 -100235854 - MTE-int LTR MaLR -1311 269 131 1 749 402 284 192 44 chr11 21608075 21608325 -100235531 - ORR1E LTR MaLR -10 349 63 1 749 195 296 127 0 chr11 21608353 21608424 -100235432 + L2a LINE L2 3342 3421 -5 1 749 1045 140 118 10 chr11 21608598 21608793 -100235063 + B3 SINE B2 1 216 0 1 749 645 248 44 44 chr11 21608918 21609078 -100234778 + B4A SINE B4 105 264 -28 1 749 2068 245 10 4 chr11 21609269 21609756 -100234100 + Lx6 LINE L1 6945 7434 -26 1 749 1284 89 0 0 chr11 21609896 21610076 -100233780 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 749 240 111 0 0 chr11 21610076 21610112 -100233744 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 749 657 38 0 0 chr11 21610112 21610192 -100233664 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 1 749 211 158 82 21 chr11 21610645 21610742 -100233114 + (ACTG)n Simple_repeat Simple_repeat 1 103 0 1 749 969 229 16 5 chr11 21612313 21612502 -100231354 + B3 SINE B2 2 192 -24 1 749 210 37 0 0 chr11 21612785 21612812 -100231044 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 749 666 25 0 0 chr11 21613447 21613527 -100230329 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 749 27 49 0 0 chr11 21614030 21614071 -100229785 + AT_rich Low_complexity Low_complexity 1 41 0 1 749 434 315 66 27 chr11 21615994 21616177 -100227679 + MLT1A1 LTR MaLR 3 192 -216 1 749 315 0 0 0 chr11 21616540 21616575 -100227281 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 749 185 111 0 53 chr11 21616577 21616615 -100227241 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 749 1905 195 47 48 chr11 21617039 21617534 -100226322 - RLTR11A LTR ERVK -28 500 7 1 749 987 274 131 32 chr11 21617774 21618371 -100225485 - L1ME1 LINE L1 -2 6350 5696 1 749 1079 70 28 0 chr11 21618371 21618507 -100225349 + B1_Mus1 SINE Alu 1 140 -8 1 749 272 0 0 77 chr11 21618507 21618559 -100225297 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 1 749 987 274 131 32 chr11 21618565 21618718 -100225138 - L1ME1 LINE L1 -657 5695 5526 1 749 682 306 11 17 chr11 21618830 21619006 -100224850 - B3A SINE B2 -21 177 3 1 749 363 324 35 70 chr11 21619044 21619273 -100224583 - L1ME1 LINE L1 -3289 3030 2810 1 749 377 267 158 0 chr11 21619292 21619412 -100224444 + ID_B1 SINE B4 86 224 0 1 749 241 279 99 0 chr11 21619700 21619861 -100223995 - L1ME1 LINE L1 -4802 1598 1422 1 749 216 0 0 0 chr11 21620192 21620216 -100223640 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 749 582 322 48 19 chr11 21620537 21620806 -100223050 - B4A SINE B4 -14 278 2 1 749 288 0 0 0 chr11 21620919 21620951 -100222905 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 749 288 0 0 0 chr11 21623917 21623949 -100219907 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 749 605 232 16 8 chr11 21623951 21624077 -100219779 - RSINE1 SINE B4 -23 142 16 1 749 447 19 0 0 chr11 21625433 21625485 -100218371 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 749 920 95 0 7 chr11 21626732 21626870 -100216986 + (GGAA)n Simple_repeat Simple_repeat 3 139 0 2 750 1172 55 0 14 chr11 21627327 21627475 -100216381 + B1_Mus1 SINE Alu 2 147 -1 2 750 247 25 24 24 chr11 21627488 21627529 -100216327 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2 750 25 65 0 0 chr11 21627540 21627586 -100216270 + AT_rich Low_complexity Low_complexity 1 46 0 2 750 482 258 75 22 chr11 21628391 21628566 -100215290 + B3A SINE B2 1 190 -8 2 750 441 309 32 38 chr11 21628707 21628865 -100214991 + B3 SINE B2 35 191 -25 2 750 236 331 96 0 chr11 21629799 21629935 -100213921 - L1MA7 LINE L1 -92 6199 6051 2 750 642 261 125 0 chr11 21630197 21630373 -100213483 + MER58A DNA MER1_type 27 224 0 2 750 1173 192 14 9 chr11 21630566 21630781 -100213075 - B3 SINE B2 0 216 1 2 750 255 265 34 17 chr11 21631027 21631146 -100212710 - L1MD1 LINE L1 0 6242 6122 2 750 278 318 28 18 chr11 21632001 21632110 -100211746 - Lx7 LINE L1 -398 7298 7189 2 750 206 128 0 25 chr11 21633280 21633320 -100210536 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 750 565 317 69 37 chr11 21633335 21633551 -100210305 - B4A SINE B4 -5 287 65 2 750 1985 203 31 11 chr11 21633705 21634113 -100209743 + MTD LTR MaLR 1 405 -14 2 750 318 77 53 32 chr11 21634255 21634349 -100209507 + T-rich Low_complexity Low_complexity 3 98 0 2 750 558 186 16 66 chr11 21634367 21634476 -100209380 - B1_Mm SINE Alu -1 146 45 2 750 1554 52 16 0 chr11 21634476 21634667 -100209189 - B2_Mm2 SINE B2 -1 194 1 2 750 558 186 16 66 chr11 21634667 21634678 -100209178 - B1_Mm SINE Alu -103 44 32 2 750 1205 145 287 20 chr11 21635388 21635684 -100208172 + MTEa LTR MaLR 1 375 -4 2 750 21 0 0 0 chr11 21636214 21636235 -100207621 + AT_rich Low_complexity Low_complexity 1 21 0 2 750 212 321 38 13 chr11 21636314 21636393 -100207463 + B1F SINE Alu 1 81 -68 2 750 24 53 0 0 chr11 21636420 21636458 -100207398 + AT_rich Low_complexity Low_complexity 1 38 0 2 750 536 237 8 0 chr11 21636604 21636722 -100207134 + B1_Mur1 SINE Alu 9 127 -22 2 750 198 252 77 120 chr11 21637251 21637368 -100206488 - L2 LINE L2 -537 2882 2771 2 750 6509 77 10 40 chr11 21637914 21638620 -100205236 - Lx LINE L1 -2 6652 5965 2 750 1314 100 0 10 chr11 21638620 21638812 -100205044 - B2_Mm2 SINE B2 -5 190 1 2 750 6509 77 10 40 chr11 21638812 21639082 -100204774 - Lx LINE L1 -690 5964 5705 2 750 256 239 25 133 chr11 21639270 21639473 -100204383 - L1MD LINE L1 -758 5484 5304 2 750 1002 335 86 3 chr11 21639772 21640143 -100203713 + MTD LTR MaLR 18 419 0 2 750 787 165 0 0 chr11 21641046 21641173 -100202683 + B1_Mus1 SINE Alu 1 127 -21 2 750 22 0 0 0 chr11 21641223 21641245 -100202611 + AT_rich Low_complexity Low_complexity 1 22 0 2 750 20631 138 21 151 chr11 21641253 21645666 -100198190 + L1_Mus3 LINE L1 410 4877 -1006 2 750 453 36 0 0 chr11 21645666 21645721 -100198135 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 750 20631 123 22 110 chr11 21645721 21648395 -100195461 + L1_Mus3 LINE L1 4878 6633 -5 2 750 348 202 119 0 chr11 21650140 21650225 -100193631 - PB1D9 SINE Alu -6 141 19 2 750 213 121 0 0 chr11 21650938 21650971 -100192885 + (A)n Simple_repeat Simple_repeat 1 33 0 2 750 840 245 32 5 chr11 21650985 21651202 -100192654 + ID_B1 SINE B4 1 223 -1 2 750 260 279 144 0 chr11 21651432 21651543 -100192313 - Cheshire DNA MER1_type -2163 257 131 2 750 306 0 0 0 chr11 21652035 21652069 -100191787 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 750 301 245 64 64 chr11 21652321 21652430 -100191426 + L1M LINE L1 5300 5408 -756 2 750 3255 53 5 0 chr11 21652432 21652826 -100191030 - MTA_Mm LTR MaLR 0 396 1 2 750 8134 32 7 2 chr11 21652850 21654158 -100189698 - L1Md_F2 LINE L1 -1 6581 5263 2 750 4148 86 0 23 chr11 21654145 21654755 -100189101 + L1Md_F2 LINE L1 4654 5249 -634 2 750 1001 75 20 0 chr11 21654797 21654943 -100188913 + (TTTCC)n Simple_repeat Simple_repeat 3 151 0 2 750 303 323 204 28 chr11 21654943 21655227 -100188629 - L1M4 LINE L1 -1270 4876 4543 2 750 756 222 71 44 chr11 21655235 21655461 -100188395 - RMER1C Other Other -18 1324 1093 2 750 858 303 36 30 chr11 21655491 21655942 -100187914 - RMER1B Other Other -513 829 164 2 750 226 231 0 0 chr11 21656123 21656175 -100187681 - RMER1B Other Other -961 105 54 2 750 281 320 20 0 chr11 21657213 21657313 -100186543 + Lx6 LINE L1 6961 7062 -398 2 750 627 258 42 16 chr11 21657328 21657521 -100186335 + Lx6 LINE L1 7111 7308 -152 2 750 647 216 0 0 chr11 21657557 21657696 -100186160 + Lx6 LINE L1 7312 7450 -10 2 750 6671 54 1 0 chr11 21657738 21658608 -100185248 + L1Md_F2 LINE L1 4716 5586 -297 2 750 8398 34 0 4 chr11 21658608 21659608 -100184248 + L1Md_F2 LINE L1 5587 6582 0 2 750 356 288 53 53 chr11 21659626 21659795 -100184061 + L1MEf LINE L1 920 1088 -5154 2 750 323 323 70 19 chr11 21659984 21660142 -100183714 + L1MEf LINE L1 1389 1554 -4688 2 750 269 290 43 11 chr11 21660319 21660413 -100183443 - RLTR31_Mur LTR ERVK 0 553 457 2 750 5576 70 8 0 chr11 21660454 21661212 -100182644 + L1_Mus3 LINE L1 5800 6563 -75 2 750 425 317 142 27 chr11 21661847 21662220 -100181636 + L1MEf LINE L1 2562 2977 -3169 2 750 334 268 90 51 chr11 21662271 21662527 -100181329 + L1MC4 LINE L1 7135 7400 -642 2 750 364 265 36 0 chr11 21662536 21662619 -100181237 + B1_Mus1 SINE Alu 7 92 -56 2 750 522 0 0 0 chr11 21663824 21663882 -100179974 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 750 837 202 97 10 chr11 21664428 21664623 -100179233 - B3 SINE B2 0 216 5 2 750 265 295 124 75 chr11 21664646 21664807 -100179049 + MLT1F2 LTR MaLR 369 537 -23 2 750 234 105 0 0 chr11 21664897 21664935 -100178921 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 750 310 206 16 0 chr11 21664975 21665038 -100178818 - B1_Mur1 SINE Alu -11 138 75 2 750 879 256 29 16 chr11 21665039 21665281 -100178575 - Lx9 LINE L1 -1081 6563 6319 2 750 1511 11 6 0 chr11 21665557 21665734 -100178122 + (TTC)n Simple_repeat Simple_repeat 3 180 0 2 750 537 16 0 0 chr11 21665736 21665798 -100178058 + (TTCTCC)n Simple_repeat Simple_repeat 5 66 0 2 750 7485 40 0 3 chr11 21665798 21667105 -100176751 - L1Md_T LINE L1 -2 6580 5280 2 750 2548 212 27 97 chr11 21667105 21667733 -100176123 - RMER19C LTR ERVK -27 584 1 2 750 1314 243 124 28 chr11 21667740 21668416 -100175440 - Lx9 LINE L1 -1592 6052 5278 2 750 259 269 11 11 chr11 21668431 21668525 -100175331 - Lx7 LINE L1 0 7696 7603 2 750 2721 237 75 22 chr11 21668529 21669385 -100174471 - Lx7 LINE L1 -49 7647 6747 2 750 986 160 0 49 chr11 21669399 21669583 -100174273 + URR1B DNA MER1_type 51 225 0 2 750 1327 185 49 62 chr11 21669583 21669888 -100173968 - Lx7 LINE L1 -939 6757 6457 2 750 671 245 240 18 chr11 21669890 21670303 -100173553 - Lx9 LINE L1 -588 5292 4769 2 750 24780 122 11 81 chr11 21670370 21675330 -100168526 - L1_Mus2 LINE L1 -4 6562 1723 2 750 2529 40 30 6 chr11 21675330 21675660 -100168196 - ORR1A1 LTR MaLR -8 338 1 2 750 24780 122 11 81 chr11 21675660 21676733 -100167123 - L1_Mus2 LINE L1 -4 1722 675 2 750 299 225 64 96 chr11 21676776 21676963 -100166893 - L1_Mus2 LINE L1 -6146 488 367 2 750 575 288 52 33 chr11 21676967 21676998 -100166858 - Lx9 LINE L1 -1118 4762 4732 2 750 1187 72 94 0 chr11 21676998 21677178 -100166678 - L1Md_F2 LINE L1 -3 6579 6383 2 750 575 288 52 33 chr11 21677178 21677451 -100166405 - Lx9 LINE L1 -1149 4731 4454 2 750 1413 124 0 5 chr11 21677535 21677753 -100166103 - Lx2 LINE L1 -6 6991 6775 2 750 6548 142 74 13 chr11 21677753 21679478 -100164378 - Lx2 LINE L1 -354 6643 4812 2 750 3064 26 76 35 chr11 21679478 21679873 -100163983 + IAPLTR2a LTR ERVK 1 411 0 2 750 4019 213 110 35 chr11 21679873 21680770 -100163086 - Lx2 LINE L1 -1834 2080 1808 2 750 264 111 0 0 chr11 21680819 21680864 -100162992 + (T)n Simple_repeat Simple_repeat 1 45 0 2 750 2714 3 0 0 chr11 21680884 21681185 -100162671 - L1Md_A LINE L1 0 6582 6282 2 750 403 200 74 0 chr11 21681197 21681292 -100162564 + RMER4B LTR ERVK 20 121 -464 2 750 6309 179 20 27 chr11 21681293 21682599 -100161257 + MurERV4-int LTR ERVK 461 1757 -3503 2 750 1175 137 166 14 chr11 21682588 21682867 -100160989 + MurERV4-int LTR ERVK 4939 5259 -1 2 750 2887 137 127 0 chr11 21682868 21683373 -100160483 + RMER4B LTR ERVK 1 569 -16 2 750 11252 135 17 29 chr11 21683376 21686645 -100157211 - L1Md_A LINE L1 -2064 3813 620 2 750 17521 164 22 122 chr11 21686709 21690778 -100153078 + L1_Mus4 LINE L1 370 3833 -2053 2 750 1973 88 17 17 chr11 21690778 21691068 -100152788 - L1Md_F2 LINE L1 -3 6579 6290 2 750 17521 153 22 103 chr11 21691068 21692472 -100151384 + L1_Mus4 LINE L1 3834 5268 -1368 2 750 295 234 104 70 chr11 21692472 21692587 -100151269 + RLTR25B LTR ERVK 391 509 -519 2 750 815 30 0 0 chr11 21692529 21692630 -100151226 + B1_Mus2 SINE Alu 47 147 0 2 750 17521 153 22 103 chr11 21692630 21693966 -100149890 + L1_Mus4 LINE L1 5269 6636 0 2 750 2799 258 51 6 chr11 21693972 21694240 -100149616 - L1_Rod LINE L1 -3522 2325 2030 2 750 216 0 0 0 chr11 21694240 21694264 -100149592 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 750 2799 258 51 6 chr11 21694264 21695069 -100148787 - L1_Rod LINE L1 -3818 2029 1204 2 750 978 209 49 0 chr11 21695075 21695338 -100148518 - L1_Rod LINE L1 -6303 869 594 2 750 3069 68 2 8 chr11 21695439 21695837 -100148019 + MTA_Mm LTR MaLR 1 396 0 2 750 1450 234 76 13 chr11 21695888 21696282 -100147574 + MTD LTR MaLR 1 419 0 2 750 290 320 0 37 chr11 21696799 21696880 -100146976 - B1F1 SINE Alu -71 78 1 2 750 1279 249 44 19 chr11 21696905 21697225 -100146631 - MTEb LTR MaLR 0 379 52 2 750 372 327 52 20 chr11 21697456 21697806 -100146050 + L1M2 LINE L1 2142 2502 -3345 2 750 583 266 95 0 chr11 21698178 21698336 -100145520 - B3 SINE B2 -5 211 39 2 750 738 280 57 34 chr11 21698341 21698422 -100145434 + L1M2 LINE L1 2867 2946 -3197 2 750 2039 97 6 56 chr11 21698422 21698761 -100145095 - RLTRETN_Mm LTR ERVK 0 322 1 2 750 738 280 57 34 chr11 21698761 21699155 -100144701 + L1M2 LINE L1 2947 3353 -2790 2 750 885 205 26 95 chr11 21699181 21699413 -100144443 + B3 SINE B2 1 216 0 2 750 367 346 10 0 chr11 21699559 21699660 -100144196 + PB1D7 SINE Alu 6 107 -13 2 750 1067 204 33 22 chr11 21699657 21700079 -100143777 - ORR1C2 LTR MaLR -15 369 3 2 750 588 241 192 0 chr11 21700283 21700471 -100143385 - MTD LTR MaLR -13 406 181 2 750 504 268 9 26 chr11 21700577 21700692 -100143164 - MTD LTR MaLR -191 228 116 2 750 388 306 53 20 chr11 21700828 21701072 -100142784 + L1_Mur3 LINE L1 3681 3932 -1948 2 750 275 260 21 0 chr11 21701079 21701175 -100142681 + L1MA4 LINE L1 5794 5891 -409 2 750 21557 140 104 30 chr11 21701176 21706685 -100137171 + L1_Mus2 LINE L1 640 6565 -1 2 750 343 276 181 9 chr11 21706860 21707203 -100136653 - L1M2 LINE L1 -877 5263 4862 2 750 240 310 84 0 chr11 21707224 21707295 -100136561 + ID4 SINE ID 1 77 -6 2 750 238 200 0 0 chr11 21707387 21707437 -100136419 - L1M2 LINE L1 -1397 4746 4697 2 750 1460 256 168 34 chr11 21707495 21708624 -100135232 - L1M2 LINE L1 -1447 4696 3391 2 750 283 224 104 13 chr11 21709279 21709433 -100134423 - L1M2 LINE L1 -2884 3256 3089 2 750 496 233 120 0 chr11 21709921 21710071 -100133785 - Lx8 LINE L1 -396 7077 6910 2 750 1650 287 74 11 chr11 21710067 21711117 -100132739 - L1_Mur3 LINE L1 -2543 3304 2196 2 750 1673 263 142 34 chr11 21711180 21711207 -100132649 - Cheshire DNA MER1_type -120 2300 2274 2 750 2245 105 23 9 chr11 21711207 21711553 -100132303 + L1_Mus4 LINE L1 6279 6629 -7 3 750 1673 263 142 34 chr11 21711553 21712253 -100131603 - Cheshire DNA MER1_type -147 2273 1497 2 750 313 309 82 0 chr11 21712235 21712332 -100131524 - Cheshire DNA MER1_type -2315 105 1 2 750 365 269 94 1 chr11 21712528 21712663 -100131193 - HAL1N1_MD LINE L1 -689 5435 5308 3 750 807 191 220 0 chr11 21713504 21713677 -100130179 + B3 SINE B2 1 211 -5 3 750 22 35 0 0 chr11 21713915 21713944 -100129912 + AT_rich Low_complexity Low_complexity 1 29 0 3 750 650 250 29 0 chr11 21713947 21714083 -100129773 - RSINE1 SINE B4 -24 141 2 3 750 504 48 0 0 chr11 21714224 21714287 -100129569 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 750 231 225 72 7 chr11 21714588 21714727 -100129129 + (TATAA)n Simple_repeat Simple_repeat 3 150 0 3 750 249 296 132 7 chr11 21714936 21715072 -100128784 + MIR SINE MIR 108 260 -2 3 750 720 155 54 0 chr11 21715494 21715623 -100128233 - Lx4A LINE L1 -163 6895 6760 3 750 240 233 0 0 chr11 21715634 21715707 -100128149 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 750 366 242 0 0 chr11 21715743 21715809 -100128047 + B4A SINE B4 213 278 -14 3 750 486 217 132 0 chr11 21715898 21716004 -100127852 + B3 SINE B2 47 166 -50 3 750 1217 129 119 0 chr11 21716411 21716605 -100127251 - URR1A DNA MER1_type -1 225 9 3 750 219 36 0 0 chr11 21716615 21716643 -100127213 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 750 1043 86 0 0 chr11 21716643 21716782 -100127074 - B1_Mm SINE Alu -2 145 7 3 750 561 243 20 26 chr11 21716647 21716799 -100127057 - ID_B1 SINE B4 -6 218 68 3 750 210 220 85 0 chr11 21716888 21716947 -100126909 - MIRb SINE MIR -86 182 119 3 750 203 295 0 16 chr11 21717117 21717179 -100126677 + G-rich Low_complexity Low_complexity 5 65 0 3 750 247 65 21 21 chr11 21717440 21717487 -100126369 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 3 750 514 291 79 30 chr11 21718549 21718815 -100125041 - B4A SINE B4 -10 282 4 3 750 194 227 0 43 chr11 21718861 21718907 -100124949 - L4 LINE RTE -645 1384 1341 3 750 359 333 115 0 chr11 21718961 21719011 -100124845 - Lx8 LINE L1 -191 7282 7231 3 750 720 0 0 0 chr11 21719011 21719091 -100124765 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 750 359 333 115 0 chr11 21719091 21719214 -100124642 - Lx8 LINE L1 -243 7230 7091 3 750 603 215 25 25 chr11 21719212 21719374 -100124482 - Lx8 LINE L1 -535 6938 6777 3 750 545 242 74 64 chr11 21719375 21719578 -100124278 - Lx8 LINE L1 -644 6829 6625 3 750 2778 159 12 28 chr11 21719578 21720084 -100123772 - RLTR16 LTR ERVK -1 504 7 3 750 683 301 23 0 chr11 21720087 21720303 -100123553 - Lx8 LINE L1 -840 6633 6413 3 750 323 278 25 38 chr11 21721412 21721569 -100122287 + L1MA5 LINE L1 5235 5389 -754 3 750 640 297 82 22 chr11 21721573 21721973 -100121883 + L1MA5 LINE L1 5513 5936 -364 3 750 389 203 151 20 chr11 21723291 21723437 -100120419 - MTE2b LTR MaLR -4 375 211 3 750 396 275 18 0 chr11 21723467 21723576 -100120280 - MTE2b LTR MaLR -254 125 15 3 750 457 281 9 9 chr11 21724016 21724131 -100119725 + B1_Mur4 SINE Alu 35 149 -1 3 750 485 227 142 29 chr11 21728244 21728448 -100115408 - MER58B DNA MER1_type -88 253 27 3 750 222 62 0 0 chr11 21728550 21728582 -100115274 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 750 1808 249 120 14 chr11 21729163 21729819 -100114037 - Lx8 LINE L1 -4 7469 6744 3 750 564 199 7 90 chr11 21729864 21730019 -100113837 - URR1B DNA MER1_type -33 192 51 3 750 1095 254 173 3 chr11 21730020 21730367 -100113489 - Lx8 LINE L1 -733 6740 6335 3 750 260 296 17 0 chr11 21730479 21730594 -100113262 - L1M2 LINE L1 -1176 4967 4851 3 750 1236 272 49 14 chr11 21730596 21730672 -100113184 - MTD LTR MaLR 0 419 341 3 750 1911 147 12 3 chr11 21730672 21730992 -100112864 + ORR1A2 LTR MaLR 1 323 -4 3 750 1236 272 49 14 chr11 21730992 21731262 -100112594 - MTD LTR MaLR -79 340 62 3 750 925 241 66 52 chr11 21731323 21731748 -100112108 - L1_Rod LINE L1 -1315 4532 4102 3 750 7852 116 5 7 chr11 21731897 21733989 -100109867 - L1_Mus3 LINE L1 -4 6634 4544 3 750 802 83 0 24 chr11 21733964 21734088 -100109768 + L1_Mm LINE L1 5326 5446 -437 3 750 10750 121 112 53 chr11 21734086 21737098 -100106758 - L1VL2 LINE L1 -324 3291 98 3 750 6314 71 7 1 chr11 21737129 21737991 -100105865 + L1_Mus1 LINE L1 5701 6567 0 3 750 30607 92 4 3 chr11 21738103 21743290 -100100566 + L1Md_F2 LINE L1 446 5595 -288 3 750 2361 66 119 11 chr11 21743290 21743642 -100100214 + RLTR10 LTR ERVK 1 390 0 3 750 7677 56 11 3 chr11 21743642 21744615 -100099241 + L1Md_F2 LINE L1 5590 6570 -12 3 750 1241 219 21 28 chr11 21744867 21745158 -100098698 - L1_Rod LINE L1 -1776 4071 3783 3 750 393 22 0 0 chr11 21745169 21745215 -100098641 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 750 845 275 139 4 chr11 21745228 21745458 -100098398 - B4A SINE B4 -5 287 27 3 750 26 0 0 0 chr11 21745768 21745794 -100098062 + AT_rich Low_complexity Low_complexity 1 26 0 3 750 506 321 147 0 chr11 21746404 21746588 -100097268 + MER2 DNA MER2_type 130 340 -5 3 750 767 289 37 22 chr11 21746636 21746908 -100096948 + B4A SINE B4 1 276 -16 3 750 385 221 67 0 chr11 21747738 21747822 -100096034 + PB1D10 SINE Alu 1 90 -58 3 750 297 216 139 40 chr11 21748016 21748117 -100095739 + PB1D10 SINE Alu 6 116 -1 3 750 207 100 0 0 chr11 21748375 21748405 -100095451 + (CCA)n Simple_repeat Simple_repeat 1 30 0 3 750 757 270 158 10 chr11 21748633 21748925 -100094931 + MTE2a LTR MaLR 41 375 -4 3 750 540 45 0 0 chr11 21749323 21749390 -100094466 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 750 400 277 11 0 chr11 21750120 21750214 -100093642 - PB1D10 SINE Alu -11 106 12 3 750 257 352 123 15 chr11 21750223 21750353 -100093503 - MIR3 SINE MIR -50 158 15 3 750 309 238 35 12 chr11 21750535 21750620 -100093236 - MER58B DNA MER1_type -140 201 115 3 750 241 330 109 10 chr11 21750646 21750747 -100093109 - MER102b DNA MER1_type -220 121 11 3 750 227 300 154 0 chr11 21750813 21750943 -100092913 + L1M3 LINE L1 2601 2750 -3390 3 750 350 211 285 18 chr11 21751022 21751367 -100092489 + L1M3 LINE L1 2773 3199 -2941 3 750 962 279 96 20 chr11 21751515 21752070 -100091786 + L1M3 LINE L1 3435 4031 -2109 3 750 353 283 98 0 chr11 21752089 21752181 -100091675 + RSINE1 SINE B4 1 101 -64 3 750 22 35 0 0 chr11 21752289 21752318 -100091538 + AT_rich Low_complexity Low_complexity 1 29 0 3 750 300 310 119 99 chr11 21752385 21752633 -100091223 + L1M3 LINE L1 4201 4483 -1657 3 750 364 297 59 8 chr11 21752633 21752752 -100091104 + PB1 SINE Alu 1 125 -2 3 750 300 310 119 99 chr11 21752752 21752932 -100090924 + L1M3 LINE L1 4484 4636 -1504 3 750 515 304 20 20 chr11 21752932 21753083 -100090773 - RSINE1 SINE B4 -12 153 3 3 750 300 310 119 99 chr11 21753083 21753298 -100090558 + L1M3 LINE L1 4637 4858 -1282 3 750 311 314 57 9 chr11 21753447 21753553 -100090303 + B3A SINE B2 80 190 -8 3 750 18284 75 13 7 chr11 21753663 21756991 -100086865 + MusHAL1 LINE L1 4 3351 -2 3 93 1011 310 47 14 chr11 21757682 21758241 -100085615 - L1_Mur3 LINE L1 -1590 4290 3714 3 751 387 0 0 0 chr11 21758241 21758284 -100085572 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 751 204 40 0 0 chr11 21758484 21758509 -100085347 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 751 1179 81 0 0 chr11 21758549 21758697 -100085159 - B1_Mus1 SINE Alu 0 148 1 3 751 1306 85 11 6 chr11 21758698 21758876 -100084980 - B2_Mm2 SINE B2 -15 180 2 3 751 1655 313 92 26 chr11 21758913 21759851 -100084005 - Lx8 LINE L1 -286 7187 6188 3 751 21 0 0 0 chr11 21760103 21760124 -100083732 + AT_rich Low_complexity Low_complexity 1 21 0 3 751 242 287 11 33 chr11 21760238 21760328 -100083528 - L1_Rod LINE L1 -135 5712 5625 3 751 4749 103 31 37 chr11 21760497 21761232 -100082624 + Lx LINE L1 5917 6647 -7 3 751 362 285 0 0 chr11 21761271 21761401 -100082455 - L1_Rod LINE L1 -456 5391 5262 3 751 274 220 66 0 chr11 21761813 21761899 -100081957 - L1_Rod LINE L1 -1185 4955 4846 3 751 702 254 115 68 chr11 21762006 21762285 -100081571 - B4 SINE B4 0 292 1 3 751 210 24 45 45 chr11 21762355 21762399 -100081457 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 751 591 285 125 13 chr11 21762404 21762668 -100081188 - L1_Mur3 LINE L1 -1209 4671 4367 3 751 441 0 0 0 chr11 21762668 21762717 -100081139 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 751 591 285 125 13 chr11 21762717 21762843 -100081013 - L1_Mur3 LINE L1 -1514 4366 4238 3 751 4439 131 24 16 chr11 21763040 21763790 -100080066 - RMER6A LTR ERVK 0 756 1 3 751 423 276 87 0 chr11 21764665 21764792 -100079064 + MER58A DNA MER1_type 35 172 -52 3 751 24 77 0 0 chr11 21765168 21765220 -100078636 + AT_rich Low_complexity Low_complexity 1 52 0 3 751 753 240 49 11 chr11 21765574 21765759 -100078097 - B3 SINE B2 0 216 25 3 751 808 296 92 81 chr11 21766685 21766761 -100077095 + L1_Rod LINE L1 2138 2210 -3637 3 751 556 161 144 8 chr11 21766761 21766886 -100076970 + B1F2 SINE Alu 3 144 -5 3 751 808 296 92 81 chr11 21766886 21767663 -100076193 + L1_Rod LINE L1 2211 3022 -2825 3 751 793 155 21 21 chr11 21767663 21767808 -100076048 + B1_Mus2 SINE Alu 3 147 0 3 751 808 299 93 81 chr11 21767808 21768528 -100075328 + L1_Rod LINE L1 2988 3719 -2161 3 751 310 257 29 0 chr11 21768528 21768598 -100075258 + B3A SINE B2 5 76 -122 3 751 3039 197 11 166 chr11 21768598 21769571 -100074285 + RMER1B Other Other 233 1055 -11 3 751 966 100 0 0 chr11 21769573 21769713 -100074143 + (GGAA)n Simple_repeat Simple_repeat 3 142 0 3 751 572 310 81 58 chr11 21769715 21770023 -100073833 - MTE2a LTR MaLR -64 315 1 3 751 524 238 114 8 chr11 21770155 21770278 -100073578 - B1_Mur4 SINE Alu -1 149 14 3 751 943 207 37 33 chr11 21770285 21770500 -100073356 - B3 SINE B2 0 216 1 3 751 248 234 39 0 chr11 21771484 21771555 -100072301 + B1F2 SINE Alu 1 74 -75 3 751 371 266 47 99 chr11 21771555 21771726 -100072130 + RSINE1 SINE B4 4 165 0 3 751 22 35 0 0 chr11 21771735 21771764 -100072092 + AT_rich Low_complexity Low_complexity 1 29 0 3 751 1029 89 7 0 chr11 21771971 21772106 -100071750 + B1_Mm SINE Alu 2 137 -10 3 751 1153 96 0 11 chr11 21772106 21772286 -100071570 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 751 225 0 0 0 chr11 21772392 21772417 -100071439 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 751 486 49 0 0 chr11 21772575 21772636 -100071220 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 751 1749 204 24 21 chr11 21772640 21773016 -100070840 - Lx4B LINE L1 -7 7051 6675 3 751 3235 154 123 0 chr11 21773022 21773159 -100070697 - Lx4B LINE L1 -747 6311 6172 3 751 441 0 0 0 chr11 21773159 21773208 -100070648 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 751 5429 135 59 2 chr11 21773208 21774335 -100069521 - Lx4B LINE L1 -887 6171 4926 3 751 2407 145 20 18 chr11 21774341 21774740 -100069116 - RLTR9D LTR ERVK -3 400 1 3 751 274 59 36 89 chr11 21774760 21774816 -100069040 - ETnERV2-int LTR ERVK -23 7383 7331 3 751 806 234 20 15 chr11 21775033 21775233 -100068623 - ETnERV2-int LTR ERVK -984 6422 6222 3 751 5341 115 7 6 chr11 21775281 21776097 -100067759 - ETnERV2-int LTR ERVK -1179 6227 5411 3 751 3061 103 12 12 chr11 21776097 21776600 -100067256 - L1_Mur2 LINE L1 -1410 4467 3965 4 751 21 36 0 0 chr11 21776601 21776629 -100067227 + AT_rich Low_complexity Low_complexity 1 28 0 4 751 7780 131 21 18 chr11 21777954 21779394 -100064462 - MusHAL1 LINE L1 -784 1928 484 4 751 456 67 0 0 chr11 21779726 21779786 -100064070 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 751 1777 237 109 26 chr11 21779998 21780932 -100062924 + Lx7 LINE L1 901 1917 -3930 4 751 1582 261 42 29 chr11 21780935 21781652 -100062204 + Lx7 LINE L1 2953 3678 -2169 4 751 1513 211 118 8 chr11 21781673 21782045 -100061811 + MTD LTR MaLR 7 419 0 4 751 6026 219 67 39 chr11 21782065 21784219 -100059637 + Lx7 LINE L1 3708 5973 -1671 4 751 628 188 141 0 chr11 21784628 21784756 -100059100 + B1_Mur1 SINE Alu 2 147 -2 4 751 23 0 0 0 chr11 21784842 21784865 -100058991 + AT_rich Low_complexity Low_complexity 1 23 0 4 751 288 77 0 0 chr11 21785008 21785047 -100058809 + (GGA)n Simple_repeat Simple_repeat 2 40 0 4 751 433 277 33 13 chr11 21785249 21785386 -100058470 - MER5A1 DNA MER1_type -27 139 1 4 751 563 204 28 0 chr11 21785889 21785997 -100057859 + B1_Mur2 SINE Alu 33 143 -6 4 751 33 56 0 0 chr11 21786151 21786205 -100057651 + AT_rich Low_complexity Low_complexity 1 54 0 4 751 28176 113 11 2 chr11 21786854 21792085 -100051771 - L1_Mus2 LINE L1 -214 6352 1071 4 751 1321 156 675 32 chr11 21792085 21792112 -100051744 - B2_Mm1t SINE B2 -15 201 162 4 751 378 0 0 0 chr11 21792112 21792154 -100051702 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 751 1321 48 0 0 chr11 21792154 21792314 -100051542 - B2_Mm1t SINE B2 -32 161 2 4 751 1580 219 40 33 chr11 21792314 21792763 -100051093 - L1_Mus2 LINE L1 -5497 1119 668 4 751 408 239 35 0 chr11 21792818 21792931 -100050925 - L1Md_F LINE L1 -5795 724 608 4 751 7737 49 10 0 chr11 21793080 21794041 -100049815 + L1Md_F3 LINE L1 5600 6570 -14 4 751 411 291 107 25 chr11 21794271 21794514 -100049342 - MER58B DNA MER1_type 0 341 79 4 751 226 305 17 0 chr11 21794617 21794676 -100049180 + B1F SINE Alu 26 85 -64 4 751 414 271 75 0 chr11 21794709 21794816 -100049040 + RSINE1 SINE B4 5 119 -46 4 751 469 266 8 34 chr11 21794858 21794975 -100048881 + ID_B1 SINE B4 85 198 -26 4 751 5849 90 15 2 chr11 21795115 21795958 -100047898 - L1_Mus2 LINE L1 0 6566 5713 4 751 411 217 0 0 chr11 21796730 21796799 -100047057 + ID4_ SINE ID 4 72 -11 4 751 24 32 0 0 chr11 21796819 21796850 -100047006 + AT_rich Low_complexity Low_complexity 1 31 0 4 751 21 95 0 0 chr11 21796884 21796947 -100046909 + AT_rich Low_complexity Low_complexity 1 63 0 4 751 1251 128 78 0 chr11 21797028 21797232 -100046624 + URR1A DNA MER1_type 7 226 0 4 751 267 54 0 0 chr11 21797262 21797299 -100046557 + (T)n Simple_repeat Simple_repeat 1 37 0 4 751 1173 62 0 0 chr11 21797299 21797445 -100046411 - B1_Mus2 SINE Alu 0 147 2 4 751 238 275 14 0 chr11 21797512 21797581 -100046275 + GA-rich Low_complexity Low_complexity 1 70 0 4 751 322 273 60 72 chr11 21797586 21797752 -100046104 + B4A SINE B4 41 204 -88 4 751 510 29 0 0 chr11 21798045 21798113 -100045743 + L1Md_T LINE L1 6515 6582 0 4 751 22 35 0 0 chr11 21798304 21798333 -100045523 + AT_rich Low_complexity Low_complexity 1 29 0 4 751 873 205 109 10 chr11 21798791 21798983 -100044873 + B3 SINE B2 1 211 -5 4 751 261 221 87 65 chr11 21799235 21799327 -100044529 + LTR40a LTR ERVL 365 458 -61 4 751 544 245 58 23 chr11 21799327 21799586 -100044270 + Lx6 LINE L1 109 376 -7352 4 751 2732 77 48 0 chr11 21799611 21799987 -100043869 - L1_Mus1 LINE L1 -1 6566 6173 4 751 1598 89 13 0 chr11 21799987 21800223 -100043633 + L1_Mus1 LINE L1 5919 6157 -410 4 751 732 259 21 0 chr11 21800224 21800417 -100043439 + Lx6 LINE L1 366 562 -7166 4 751 1243 199 37 11 chr11 21800410 21800760 -100043096 + Lx6 LINE L1 859 1217 -6511 4 751 11482 163 118 60 chr11 21800754 21802581 -100041275 + Lx6 LINE L1 1162 3232 -2654 4 751 575 184 43 9 chr11 21802581 21802696 -100041160 + URR1B DNA MER1_type 1 119 -106 4 751 11482 163 118 60 chr11 21802696 21804474 -100039382 + Lx6 LINE L1 3233 5249 -637 4 751 234 0 0 0 chr11 21804474 21804500 -100039356 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 751 10550 212 86 29 chr11 21804500 21805980 -100037876 + Lx6 LINE L1 5250 6756 -704 4 751 1468 119 85 0 chr11 21805980 21806240 -100037616 - Lx2A1 LINE L1 -8 7000 6719 4 751 7896 208 69 21 chr11 21806240 21806435 -100037421 + Lx6 LINE L1 6757 6989 -471 4 751 192 40 0 0 chr11 21806435 21806460 -100037396 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 751 7896 208 69 21 chr11 21806460 21806904 -100036952 + Lx6 LINE L1 6990 7452 -8 4 751 33816 35 0 0 chr11 21806990 21812432 -100031424 + L1Md_T LINE L1 51 5589 -297 4 751 9023 6 0 0 chr11 21812432 21813428 -100030428 + L1Md_T LINE L1 5590 6585 0 4 751 1665 251 47 39 chr11 21813432 21814107 -100029749 + L1MB2 LINE L1 5484 6164 -7 4 751 521 105 12 0 chr11 21814178 21814264 -100029592 + (GGAA)n Simple_repeat Simple_repeat 3 89 0 4 751 313 115 0 0 chr11 21814386 21814447 -100029409 - Lx LINE L1 -1 6653 6593 4 751 302 75 0 0 chr11 21814447 21814487 -100029369 - B2_Mm2 SINE B2 -155 40 1 4 751 849 263 96 69 chr11 21814489 21814629 -100029227 + L1MC LINE L1 4239 4378 -1768 4 751 292 215 62 0 chr11 21814629 21814694 -100029162 + ID4_ SINE ID 4 72 -11 4 751 849 263 96 69 chr11 21814694 21814968 -100028888 + L1MC LINE L1 4379 4656 -1490 4 751 1567 134 40 163 chr11 21814968 21815343 -100028513 - ORR1A4 LTR MaLR 0 329 1 4 751 849 263 96 69 chr11 21815343 21815491 -100028365 + L1MC LINE L1 4657 4816 -1330 4 751 14732 115 11 11 chr11 21815522 21818768 -100025088 - L1_Mus3 LINE L1 -1 6637 3393 4 751 3492 117 139 12 chr11 21818766 21819846 -100024010 - L1VL2 LINE L1 -2249 1366 119 4 751 390 213 151 65 chr11 21819862 21820048 -100023808 + L1MC LINE L1 4842 5043 -1103 4 751 703 278 93 62 chr11 21820064 21820290 -100023566 + B4A SINE B4 14 246 -46 4 751 360 0 0 0 chr11 21820313 21820353 -100023503 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 751 1043 89 6 0 chr11 21821288 21821445 -100022411 + (TC)n Simple_repeat Simple_repeat 1 158 0 4 751 21 71 0 0 chr11 21821844 21821886 -100021970 + AT_rich Low_complexity Low_complexity 1 42 0 4 751 2180 150 41 44 chr11 21822085 21822496 -100021360 - RMER1B Other Other -9 1057 648 4 751 737 215 7 0 chr11 21822491 21822640 -100021216 - RMER1B Other Other -904 162 13 4 751 28834 105 14 20 chr11 21823397 21828696 -100015160 + L1_Mus2 LINE L1 944 6172 -394 4 751 495 0 0 0 chr11 21828696 21828751 -100015105 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 751 6406 84 40 0 chr11 21828751 21829114 -100014742 + L1_Mus2 LINE L1 6173 6565 -1 4 751 305 282 73 106 chr11 21829126 21829278 -100014578 + L1_Mur3 LINE L1 4131 4264 -1616 4 751 813 262 24 9 chr11 21829278 21829490 -100014366 + B3 SINE B2 2 216 0 4 751 305 282 73 106 chr11 21829490 21829666 -100014190 + L1_Mur3 LINE L1 4265 4448 -1432 4 751 420 185 25 0 chr11 21829717 21829798 -100014058 + MT2B LTR ERVL 3 85 -448 4 751 11466 73 5 9 chr11 21829805 21832105 -100011751 - L1Md_F2 LINE L1 0 6582 4293 4 751 243 241 0 33 chr11 21832105 21832165 -100011691 + MT2B LTR ERVL 70 127 -406 4 751 761 245 92 66 chr11 21832171 21832538 -100011318 + MT2B LTR ERVL 99 601 0 4 751 6684 154 46 19 chr11 21832538 21832973 -100010883 + MERVL_2A-int LTR ERVL 1 454 -5307 4 751 1035 162 141 5 chr11 21832973 21833172 -100010684 - URR1A DNA MER1_type 0 226 1 4 751 9815 148 51 23 chr11 21833172 21834411 -100009445 + MERVL_2A-int LTR ERVL 455 1722 -4039 4 751 624 195 28 5 chr11 21834713 21834841 -100009015 - RMER20B LTR ERVK -390 126 1 4 751 7570 120 31 13 chr11 21834841 21835957 -100007899 + MERVL_2A-int LTR ERVL 1980 3115 -2646 4 751 185 197 26 132 chr11 21835957 21836033 -100007823 + L4 LINE RTE 230 297 -1732 4 751 9055 230 77 4 chr11 21836033 21838049 -100005807 + MERVL_2A-int LTR ERVL 3335 5497 -260 4 751 282 228 47 56 chr11 21838128 21838235 -100005621 + ORR1A3-int LTR MaLR 552 657 -1306 4 751 726 265 57 104 chr11 21838271 21838518 -100005338 + MT2B LTR ERVL 2 338 -263 4 751 981 70 0 0 chr11 21838518 21838661 -100005195 + (TC)n Simple_repeat Simple_repeat 2 144 0 4 751 726 239 67 43 chr11 21838661 21838779 -100005077 + MT2B LTR ERVL 339 467 -134 4 751 3993 227 71 60 chr11 21838800 21840125 -100003731 + Lx9 LINE L1 3072 4410 -1437 4 751 917 137 0 80 chr11 21840132 21840283 -100003573 + B1_Mus1 SINE Alu 5 143 -5 4 751 369 43 0 0 chr11 21840294 21840341 -100003515 + (CATA)n Simple_repeat Simple_repeat 2 48 0 4 751 744 242 60 11 chr11 21840397 21840581 -100003275 - URR1B DNA MER1_type -31 194 2 4 751 296 210 52 32 chr11 21840582 21840748 -100003108 + Lx9 LINE L1 4459 4663 -1480 4 751 1283 232 81 46 chr11 21840748 21841080 -100002776 + ORR1D2 LTR MaLR 3 351 -19 4 751 1197 56 7 7 chr11 21841080 21841225 -100002631 + B1_Mus2 SINE Alu 2 146 -1 4 751 1283 232 81 46 chr11 21841225 21841240 -100002616 + ORR1D2 LTR MaLR 352 362 -8 4 751 3832 247 65 50 chr11 21841271 21842198 -100001658 + Lx9 LINE L1 4620 5574 -273 4 751 2790 43 0 150 chr11 21842198 21842605 -100001251 - ORR1A1 LTR MaLR 0 346 1 4 751 3832 300 62 34 chr11 21842605 21843996 -99999860 + Lx9 LINE L1 5575 7186 -458 4 751 614 215 83 30 chr11 21844108 21844205 -99999651 + Lx7 LINE L1 6761 6861 -835 4 751 3568 28 2 8 chr11 21844205 21844603 -99999253 + MTA_Mm LTR MaLR 1 396 0 4 751 614 215 83 30 chr11 21844603 21844673 -99999183 + Lx7 LINE L1 6862 6937 -759 4 751 452 327 36 40 chr11 21844768 21844884 -99998972 + Lx7 LINE L1 7099 7216 -480 4 751 1813 177 125 12 chr11 21844884 21845059 -99998797 + ORR1C2 LTR MaLR 3 205 -179 4 751 1026 25 0 0 chr11 21845059 21845180 -99998676 + (TC)n Simple_repeat Simple_repeat 1 121 0 4 751 1813 177 125 12 chr11 21845180 21845347 -99998509 + ORR1C2 LTR MaLR 206 383 -1 4 751 452 327 36 40 chr11 21845347 21845453 -99998403 + Lx7 LINE L1 7217 7320 -376 4 751 1457 89 0 5 chr11 21845502 21845693 -99998163 + B2_Mm2 SINE B2 2 191 -4 4 751 3877 142 129 65 chr11 21845700 21846536 -99997320 + RMER19B LTR ERVK 1 890 -12 4 751 279 127 144 62 chr11 21846561 21846651 -99997205 + Lx8 LINE L1 7385 7472 -1 4 751 222 37 0 0 chr11 21846897 21846924 -99996932 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4 751 243 0 0 0 chr11 21846927 21846954 -99996902 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 751 3361 65 16 31 chr11 21846954 21847398 -99996458 - Lx3A LINE L1 -13 6968 6532 4 751 656 23 125 0 chr11 21847398 21847486 -99996370 + Lx3A LINE L1 6285 6383 -598 4 751 946 310 19 35 chr11 21847600 21847911 -99995945 + Lx8 LINE L1 6420 6725 -748 4 751 644 229 89 0 chr11 21847947 21848104 -99995752 + Lx8 LINE L1 6997 7167 -306 4 751 269 250 73 32 chr11 21848159 21848283 -99995573 + Lx8 LINE L1 7311 7439 -34 4 751 27 0 0 0 chr11 21848292 21848319 -99995537 + AT_rich Low_complexity Low_complexity 1 27 0 4 751 611 338 35 5 chr11 21848325 21848524 -99995332 + ID_B1 SINE B4 3 207 -17 4 751 890 264 34 138 chr11 21848714 21849127 -99994729 - RLTR23 LTR ERV1 -60 370 1 4 751 593 285 116 71 chr11 21849132 21849396 -99994460 + L1_Rod LINE L1 1467 1736 -4111 4 751 1578 177 232 29 chr11 21849396 21849745 -99994111 + MTC LTR MaLR 2 421 0 4 751 593 285 116 71 chr11 21849745 21850160 -99993696 + L1_Rod LINE L1 1737 2177 -3670 4 751 843 175 88 83 chr11 21850253 21850446 -99993410 + B3A SINE B2 2 195 -3 4 751 278 226 0 0 chr11 21851034 21851087 -99992769 + B3 SINE B2 150 202 -14 4 751 667 294 59 11 chr11 21851127 21851313 -99992543 + B3 SINE B2 11 205 -11 4 751 668 295 5 10 chr11 21851340 21851532 -99992324 + Lx8 LINE L1 7139 7329 -144 4 751 604 45 23 0 chr11 21851532 21851620 -99992236 + (GA)n Simple_repeat Simple_repeat 2 91 0 4 751 2604 259 81 1 chr11 21851692 21852408 -99991448 + Lx8 LINE L1 6250 7022 -451 4 751 800 236 7 0 chr11 21852439 21852587 -99991269 + B1_Mur1 SINE Alu 1 149 0 4 751 699 261 18 13 chr11 21852623 21852864 -99990992 + L1MA4 LINE L1 5536 5786 -526 4 751 1126 82 0 0 chr11 21852864 21852998 -99990858 + B1_Mm SINE Alu 3 136 -11 4 751 270 0 0 0 chr11 21852998 21853028 -99990828 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 751 640 239 24 122 chr11 21853028 21853105 -99990751 + L1MA4 LINE L1 5784 5835 -465 4 751 2683 157 9 12 chr11 21853914 21854334 -99989522 + MTC LTR MaLR 1 419 -2 5 751 822 132 0 0 chr11 21854334 21854470 -99989386 + (TG)n Simple_repeat Simple_repeat 1 136 0 5 751 180 0 0 0 chr11 21854600 21854620 -99989236 + (A)n Simple_repeat Simple_repeat 1 20 0 5 751 1072 278 213 4 chr11 21855129 21855779 -99988077 + L1MC3 LINE L1 5402 6179 -154 5 751 1366 84 39 11 chr11 21855893 21856074 -99987782 + B2_Mm2 SINE B2 1 186 -9 5 751 1331 171 73 12 chr11 21856083 21856331 -99987525 - Lx5 LINE L1 -622 6428 6166 5 751 623 282 0 0 chr11 21856428 21856570 -99987286 + B1F SINE Alu 1 142 -7 5 751 21 0 0 0 chr11 21857075 21857096 -99986760 + AT_rich Low_complexity Low_complexity 1 21 0 5 751 1136 103 0 7 chr11 21857650 21857787 -99986069 + B1_Mus1 SINE Alu 1 137 -11 5 751 1052 108 0 6 chr11 21857787 21857954 -99985902 + (GAA)n Simple_repeat Simple_repeat 1 166 0 5 751 216 0 0 0 chr11 21857971 21857995 -99985861 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 751 4752 106 16 45 chr11 21858143 21859108 -99984748 - Lx LINE L1 -677 5977 5064 5 751 4665 98 3 22 chr11 21859108 21859737 -99984119 + Lx LINE L1 6027 6643 -11 5 751 3598 25 2 5 chr11 21859737 21860131 -99983725 + MTA_Mm LTR MaLR 1 393 -3 5 751 602 94 17 109 chr11 21860133 21860252 -99983604 + Lx2 LINE L1 6888 6995 -2 5 751 24 0 0 0 chr11 21860846 21860870 -99982986 + AT_rich Low_complexity Low_complexity 1 24 0 5 751 379 264 35 2 chr11 21861026 21861144 -99982712 - PB1D10 SINE Alu -21 128 1 5 751 286 286 126 19 chr11 21861144 21861358 -99982498 - L1MEc LINE L1 -3191 3128 2892 5 751 395 248 40 0 chr11 21861523 21861648 -99982208 - L1MEc LINE L1 -3599 2720 2591 5 751 424 255 152 66 chr11 21861900 21862051 -99981805 + RSINE1 SINE B4 2 165 0 5 751 22 35 0 0 chr11 21862262 21862291 -99981565 + AT_rich Low_complexity Low_complexity 1 29 0 5 751 332 284 85 66 chr11 21862293 21862357 -99981499 - L1MEc LINE L1 -3711 2608 2554 5 751 1786 31 0 0 chr11 21862357 21862549 -99981307 - B2_Mm1t SINE B2 0 193 2 5 751 332 284 85 66 chr11 21862549 21862575 -99981281 - L1MEc LINE L1 -3766 2553 2528 5 751 735 240 7 0 chr11 21862575 21862721 -99981135 - B1_Mur1 SINE Alu 0 149 3 5 751 332 284 85 66 chr11 21862721 21862767 -99981089 - L1MEc LINE L1 -3792 2527 2487 5 751 1601 216 70 22 chr11 21862767 21863122 -99980734 - ORR1D1 LTR MaLR -2 372 1 5 751 332 291 127 44 chr11 21863122 21863506 -99980350 - L1MEc LINE L1 -3833 2486 2040 5 751 436 220 91 9 chr11 21863720 21863830 -99980026 - B4A SINE B4 -2 290 172 5 751 922 184 13 13 chr11 21864633 21864782 -99979074 + B1_Mur1 SINE Alu 1 149 0 5 751 419 0 0 19 chr11 21864804 21864856 -99979000 + (TAA)n Simple_repeat Simple_repeat 3 53 0 5 751 229 238 15 60 chr11 21865427 21865494 -99978362 + PB1 SINE Alu 62 125 -2 5 751 880 193 0 0 chr11 21865609 21865744 -99978112 + B1_Mur4 SINE Alu 3 137 -13 5 751 353 336 107 0 chr11 21865886 21866017 -99977839 - RSINE1 SINE B4 -17 148 4 5 751 793 188 156 22 chr11 21866050 21866230 -99977626 - B3 SINE B2 -10 206 3 5 751 4739 53 2 4 chr11 21866734 21867286 -99976570 + L1Md_F2 LINE L1 6029 6579 -3 5 751 183 205 0 0 chr11 21867354 21867393 -99976463 + GA-rich Low_complexity Low_complexity 2 40 0 5 751 227 204 23 0 chr11 21867425 21867469 -99976387 - MLT1A1 LTR MaLR -60 348 304 5 751 776 240 57 11 chr11 21867502 21867523 -99976333 - B3A SINE B2 -11 187 166 5 751 528 30 0 0 chr11 21867523 21867589 -99976267 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 751 776 240 57 11 chr11 21867589 21867744 -99976112 - B3A SINE B2 -33 165 4 5 751 499 289 23 0 chr11 21868111 21868239 -99975617 - B3 SINE B2 -79 137 7 5 751 720 206 76 0 chr11 21868824 21868955 -99974901 - B1_Mur2 SINE Alu -7 142 2 5 751 26 50 0 0 chr11 21868983 21869023 -99974833 + AT_rich Low_complexity Low_complexity 1 40 0 5 751 279 191 28 125 chr11 21869451 21869523 -99974333 + MTEa LTR MaLR 26 90 -289 5 751 844 134 40 66 chr11 21869582 21869734 -99974122 + B1_Mur2 SINE Alu 1 148 -1 5 751 2041 184 23 10 chr11 21869929 21870319 -99973537 + Lx7 LINE L1 4830 5224 -656 5 751 5320 183 48 12 chr11 21870335 21871465 -99972391 + Lx7 LINE L1 5485 6662 -1034 5 751 779 180 0 23 chr11 21871498 21871629 -99972227 - B1_Mur2 SINE Alu -8 141 14 5 751 383 320 6 82 chr11 21871629 21871668 -99972188 - B4A SINE B4 -73 219 63 5 751 209 271 0 0 chr11 21871698 21871768 -99972088 + T-rich Low_complexity Low_complexity 1 70 0 5 751 969 138 131 6 chr11 21871784 21871953 -99971903 + ORR1B2 LTR MaLR 6 196 -171 5 751 1272 229 32 19 chr11 21871953 21872301 -99971555 - RLTR20A LTR ERVK 0 577 211 5 751 858 36 0 0 chr11 21872301 21872411 -99971445 + (TG)n Simple_repeat Simple_repeat 2 111 0 5 751 891 305 68 16 chr11 21872411 21872429 -99971427 - RLTR20A LTR ERVK -367 210 193 5 751 401 255 20 10 chr11 21872432 21872531 -99971325 + RLTR20C LTR ERVK 435 534 0 5 751 984 114 66 6 chr11 21872532 21872699 -99971157 + ORR1B1 LTR MaLR 218 394 0 5 751 258 145 54 183 chr11 21872699 21872792 -99971064 + Lx7 LINE L1 7612 7692 -4 5 751 483 265 191 7 chr11 21872935 21873087 -99970769 + B3A SINE B2 2 181 -17 5 751 761 269 36 0 chr11 21873182 21873349 -99970507 + B3A SINE B2 2 174 -24 5 751 234 0 0 0 chr11 21873354 21873380 -99970476 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 751 429 20 0 0 chr11 21873380 21873429 -99970427 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 751 50 65 0 0 chr11 21873433 21873525 -99970331 + AT_rich Low_complexity Low_complexity 1 92 0 5 751 491 264 110 15 chr11 21874596 21874796 -99969060 + L1M3 LINE L1 4083 4301 -1839 5 751 336 340 126 16 chr11 21874942 21875196 -99968660 + B4A SINE B4 1 282 -10 5 751 480 145 40 1 chr11 21875213 21875319 -99968537 + L1M3 LINE L1 4306 4413 -1733 5 751 378 368 19 19 chr11 21875462 21875670 -99968186 + L1M3 LINE L1 5480 5687 -502 5 751 549 322 0 66 chr11 21875867 21876050 -99967806 + ID_B1 SINE B4 2 172 -52 5 751 548 262 152 15 chr11 21876057 21876189 -99967667 - B3 SINE B2 -66 150 1 5 751 298 256 86 32 chr11 21876238 21876331 -99967525 + PB1 SINE Alu 23 120 -7 5 751 239 268 58 67 chr11 21876332 21876366 -99967490 + ID_B1 SINE B4 121 201 -23 5 751 329 197 0 32 chr11 21876366 21876429 -99967427 + B1_Mur1 SINE Alu 81 141 -8 5 751 328 200 0 0 chr11 21876508 21876573 -99967283 + PB1D10 SINE Alu 48 112 -5 5 751 666 25 0 0 chr11 21877466 21877546 -99966310 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 5 751 803 206 49 14 chr11 21877664 21877807 -99966049 + B1_Mur1 SINE Alu 1 148 -1 5 751 367 246 120 0 chr11 21877834 21877976 -99965880 + L1MA5 LINE L1 6136 6294 -6 5 751 683 246 44 50 chr11 21878357 21878537 -99965319 - B4 SINE B4 -2 290 112 5 751 333 279 84 87 chr11 21878822 21879146 -99964710 + L1M3 LINE L1 4988 5312 -828 5 751 859 173 0 21 chr11 21879146 21879288 -99964568 + B1_Mur4 SINE Alu 5 143 -7 5 751 333 279 84 87 chr11 21879288 21879355 -99964501 + L1M3 LINE L1 5313 5378 -762 5 751 381 179 0 0 chr11 21879649 21879733 -99964123 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 751 214 312 0 0 chr11 21879912 21879976 -99963880 - MIR SINE MIR -78 184 121 5 751 983 258 128 29 chr11 21880306 21880649 -99963207 - RMER20B LTR ERVK -20 607 231 5 751 1536 22 0 0 chr11 21880689 21880869 -99962987 + (TGG)n Simple_repeat Simple_repeat 1 180 0 5 751 412 206 31 52 chr11 21881401 21881498 -99962358 - MLT1F LTR MaLR -453 95 1 5 751 705 175 15 0 chr11 21881791 21881928 -99961928 + MYSERV16_I-int LTR ERVK 2058 2196 -130 5 751 3217 172 14 12 chr11 21882005 21882576 -99961280 + RLTR20B3 LTR ERVK 4 575 -2 5 751 522 243 19 9 chr11 21883200 21883308 -99960548 + B1_Mur1 SINE Alu 3 111 -38 5 751 407 318 29 29 chr11 21883308 21883335 -99960521 + ID_B1 SINE B4 84 218 -6 5 751 1013 90 64 48 chr11 21883505 21883692 -99960164 + Lx LINE L1 6464 6653 -1 5 751 24 32 0 0 chr11 21883706 21883737 -99960119 + AT_rich Low_complexity Low_complexity 1 31 0 5 751 378 0 0 0 chr11 21883737 21883779 -99960077 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 751 262 320 0 80 chr11 21884287 21884399 -99959457 + PB1D10 SINE Alu 1 103 -14 5 751 540 0 0 0 chr11 21884426 21884486 -99959370 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 751 204 350 70 35 chr11 21885144 21885345 -99958511 - L2b LINE L2 -202 3173 2966 5 751 186 312 176 47 chr11 21885400 21885679 -99958177 - L2b LINE L2 -560 2859 2545 5 751 387 0 0 0 chr11 21885759 21885802 -99958054 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 751 210 136 45 15 chr11 21885809 21885876 -99957980 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 5 751 633 263 72 7 chr11 21886348 21886501 -99957355 + RSINE1 SINE B4 2 164 -1 5 751 802 225 76 17 chr11 21886538 21886710 -99957146 + B3A SINE B2 1 182 -16 5 751 226 275 38 0 chr11 21886725 21886805 -99957051 + L1M5 LINE L1 5208 5290 -856 5 751 546 278 97 26 chr11 21886844 21887275 -99956581 + L1M5 LINE L1 5352 5837 -522 5 751 872 262 59 26 chr11 21888683 21888953 -99954903 - MTD LTR MaLR -39 380 102 5 93 656 143 84 0 chr11 21888963 21889082 -99954774 + B1_Mur4 SINE Alu 22 150 0 5 752 644 116 18 0 chr11 21889082 21889194 -99954662 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 5 752 464 207 18 9 chr11 21889197 21889309 -99954547 - MTD LTR MaLR -299 120 8 5 752 236 169 220 0 chr11 21889669 21889728 -99954128 - ID2 SINE ID -10 73 2 5 752 529 181 0 0 chr11 21889873 21889967 -99953889 - B1F1 SINE Alu -51 98 5 5 752 27 0 0 0 chr11 21890540 21890567 -99953289 + AT_rich Low_complexity Low_complexity 1 27 0 5 752 619 232 0 14 chr11 21891843 21891983 -99951873 - ID_B1 SINE B4 -1 223 86 5 752 22 0 0 0 chr11 21892231 21892253 -99951603 + AT_rich Low_complexity Low_complexity 1 22 0 5 752 900 143 11 17 chr11 21892496 21892674 -99951182 + GA-rich Low_complexity Low_complexity 3 179 0 5 752 26 98 0 0 chr11 21893098 21893180 -99950676 + GC_rich Low_complexity Low_complexity 1 82 0 5 752 432 0 0 0 chr11 21895014 21895062 -99948794 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 752 239 203 0 17 chr11 21895417 21895477 -99948379 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 752 303 28 0 0 chr11 21896402 21896438 -99947418 + (TGG)n Simple_repeat Simple_repeat 1 36 0 6 752 26 0 0 0 chr11 21899097 21899123 -99944733 + AT_rich Low_complexity Low_complexity 1 26 0 6 752 219 161 71 0 chr11 21901749 21901805 -99942051 + C-rich Low_complexity Low_complexity 3 62 0 6 752 522 0 0 0 chr11 21902373 21902431 -99941425 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 752 630 0 0 0 chr11 21904161 21904231 -99939625 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 752 441 0 0 0 chr11 21905169 21905218 -99938638 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 752 513 0 0 0 chr11 21905218 21905274 -99938582 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 752 26 0 0 0 chr11 21909407 21909433 -99934423 + AT_rich Low_complexity Low_complexity 1 26 0 6 752 202 178 40 27 chr11 21911831 21911906 -99931950 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 752 425 271 20 34 chr11 21912752 21912901 -99930955 + B1F SINE Alu 2 148 -1 6 752 336 357 43 31 chr11 21914376 21914538 -99929318 + RSINE1 SINE B4 2 165 0 6 752 311 192 14 0 chr11 21914544 21914617 -99929239 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 752 24 0 0 0 chr11 21917200 21917224 -99926632 + AT_rich Low_complexity Low_complexity 1 24 0 6 752 24 0 0 0 chr11 21917903 21917927 -99925929 + AT_rich Low_complexity Low_complexity 1 24 0 6 752 216 0 0 0 chr11 21919118 21919142 -99924714 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 752 256 64 0 41 chr11 21919232 21919281 -99924575 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 752 345 209 105 0 chr11 21919290 21919376 -99924480 - RSINE1 SINE B4 -59 106 12 6 752 25 31 0 0 chr11 21919391 21919423 -99924433 + AT_rich Low_complexity Low_complexity 1 32 0 6 752 343 259 0 0 chr11 21919663 21919748 -99924108 + RSINE1 SINE B4 4 88 -77 6 752 215 200 0 0 chr11 21919858 21919893 -99923963 - ID4_ SINE ID -2 81 47 6 752 473 259 96 0 chr11 21920501 21920636 -99923220 - RSINE1 SINE B4 -6 159 12 6 752 415 216 20 10 chr11 21920708 21920806 -99923050 - B1F2 SINE Alu -21 128 30 6 752 254 148 43 0 chr11 21920798 21920865 -99922991 - ID4_ SINE ID -10 73 3 6 752 219 139 23 69 chr11 21920926 21921057 -99922799 + A-rich Low_complexity Low_complexity 2 126 0 6 752 761 206 161 5 chr11 21921214 21921419 -99922437 + MTD LTR MaLR 183 419 0 6 752 303 286 20 0 chr11 21921997 21922095 -99921761 + PB1D10 SINE Alu 15 114 -3 6 752 190 354 0 0 chr11 21922095 21922160 -99921696 + MIR SINE MIR 46 110 -152 6 752 21 0 0 0 chr11 21922656 21922677 -99921179 + AT_rich Low_complexity Low_complexity 1 21 0 6 752 575 191 0 3 chr11 21922857 21922978 -99920878 - B3 SINE B2 -75 120 2 6 752 806 133 89 0 chr11 21923002 21923137 -99920719 - B1_Mur3 SINE Alu 0 149 3 6 752 562 174 31 0 chr11 21923335 21923433 -99920423 - RSINE1 SINE B4 -50 115 15 6 752 571 297 19 0 chr11 21923467 21923622 -99920234 - ID_B1 SINE B4 0 224 67 6 752 208 0 30 30 chr11 21924204 21924237 -99919619 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 6 752 218 268 0 0 chr11 21924502 21924558 -99919298 + PB1 SINE Alu 65 120 -7 6 752 411 21 0 0 chr11 21924748 21924796 -99919060 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 752 28 29 0 0 chr11 21924832 21924867 -99918989 + AT_rich Low_complexity Low_complexity 1 35 0 6 752 279 308 9 46 chr11 21925366 21925475 -99918381 - PB1 SINE Alu -2 125 21 6 752 3364 167 33 26 chr11 21925888 21926963 -99916893 + L1_Mur1 LINE L1 700 1781 -2131 6 752 2444 130 0 8 chr11 21926955 21927335 -99916521 + Lx3C LINE L1 3848 4224 -1653 6 752 8425 145 13 11 chr11 21927341 21928727 -99915129 + Lx3C LINE L1 5587 6974 -2 6 752 1553 43 5 0 chr11 21928791 21928975 -99914881 + B2_Mm1t SINE B2 1 185 -8 6 752 595 317 68 25 chr11 21928981 21929217 -99914639 + B4 SINE B4 2 247 -45 6 752 297 0 0 0 chr11 21929252 21929285 -99914571 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 752 413 81 16 0 chr11 21929755 21929817 -99914039 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 752 286 80 0 39 chr11 21929818 21929870 -99913986 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 752 549 0 0 0 chr11 21929932 21929993 -99913863 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 6 752 357 225 38 0 chr11 21930007 21930087 -99913769 - B1F2 SINE Alu -65 84 2 6 752 205 88 29 0 chr11 21930259 21930293 -99913563 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 752 221 258 29 114 chr11 21930761 21930866 -99912990 - MIRb SINE MIR -89 179 84 6 752 363 278 60 0 chr11 21931059 21931192 -99912664 - B1F SINE Alu 0 149 9 6 752 746 22 11 0 chr11 21931931 21932023 -99911833 + (GA)n Simple_repeat Simple_repeat 2 94 0 6 752 207 0 0 0 chr11 21933804 21933827 -99910029 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 752 218 29 59 0 chr11 21935032 21935066 -99908790 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 6 752 22 70 0 0 chr11 21936258 21936301 -99907555 + AT_rich Low_complexity Low_complexity 1 43 0 6 752 330 216 122 10 chr11 21936391 21936402 -99907454 - ID_B1 SINE B4 -9 215 107 6 752 434 116 103 11 chr11 21936402 21936489 -99907367 - B1F SINE Alu -29 120 26 6 752 192 125 0 0 chr11 21937357 21937389 -99906467 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 752 476 72 0 14 chr11 21937912 21937982 -99905874 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 752 216 0 0 0 chr11 21938899 21938923 -99904933 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 6 752 23 54 0 0 chr11 21939550 21939587 -99904269 + AT_rich Low_complexity Low_complexity 1 37 0 6 752 198 0 0 0 chr11 21940829 21940851 -99903005 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 752 180 125 0 0 chr11 21940883 21940915 -99902941 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 6 752 660 252 0 0 chr11 21941430 21941573 -99902283 - B1F SINE Alu -6 143 1 6 752 234 383 0 0 chr11 21942281 21942362 -99901494 + ID4_ SINE ID 3 83 0 6 752 794 288 108 29 chr11 21942409 21942473 -99901383 - Tigger7 DNA MER2_type -9 2482 2419 6 752 414 0 0 0 chr11 21942473 21942519 -99901337 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 752 794 288 108 29 chr11 21942519 21942797 -99901059 - Tigger7 DNA MER2_type -73 2418 2114 6 752 250 344 54 32 chr11 21943791 21943884 -99899972 - PB1 SINE Alu -30 97 3 6 752 459 355 45 0 chr11 21946735 21946890 -99896966 - RSINE1 SINE B4 -2 163 2 6 752 1238 47 0 0 chr11 21946912 21947060 -99896796 - B1_Mus1 SINE Alu 0 148 1 6 752 230 298 149 0 chr11 21947391 21947485 -99896371 - PB1D9 SINE Alu -11 109 2 6 752 511 181 191 0 chr11 21947752 21947857 -99895999 - 7SK RNA RNA -102 229 105 6 752 235 178 259 45 chr11 21947868 21947980 -99895876 + Lx4B LINE L1 6873 7008 -50 6 752 252 0 0 0 chr11 21948033 21948061 -99895795 + (A)n Simple_repeat Simple_repeat 1 28 0 6 752 490 216 16 2 chr11 21948061 21948211 -99895645 + B3 SINE B2 27 216 0 6 752 344 145 289 0 chr11 21948466 21948542 -99895314 - PB1D10 SINE Alu -11 106 9 6 752 333 260 10 0 chr11 21949553 21949649 -99894207 + L1M2 LINE L1 5605 5701 -611 6 752 917 234 49 19 chr11 21949685 21949890 -99893966 + B3 SINE B2 2 212 -4 6 752 278 304 82 19 chr11 21950031 21950239 -99893617 + L1MB4 LINE L1 5878 6098 -82 6 752 321 219 56 79 chr11 21950460 21950549 -99893307 + B1F1 SINE Alu 2 88 -61 6 752 1239 34 7 0 chr11 21950584 21950730 -99893126 + B1_Mus2 SINE Alu 1 147 0 6 752 393 144 0 0 chr11 21950730 21950820 -99893036 + (CAAAAA)n Simple_repeat Simple_repeat 6 95 0 6 752 599 275 0 81 chr11 21950910 21951084 -99892772 - RSINE1 SINE B4 0 165 6 6 752 225 0 0 0 chr11 21951345 21951370 -99892486 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 752 29 0 0 0 chr11 21951920 21951949 -99891907 + AT_rich Low_complexity Low_complexity 1 29 0 6 752 636 241 0 21 chr11 21954082 21954226 -99889630 + B1F SINE Alu 2 142 -7 6 752 1636 77 25 4 chr11 21954861 21955097 -99888759 - L1_Mus3 LINE L1 -4 6634 6394 6 752 22 0 0 0 chr11 21957839 21957861 -99885995 + AT_rich Low_complexity Low_complexity 1 22 0 6 752 342 0 0 0 chr11 21958794 21958832 -99885024 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 752 492 240 14 62 chr11 21959594 21959740 -99884116 - B1F2 SINE Alu -1 148 10 6 752 374 258 38 3 chr11 21960558 21960680 -99883176 + B1F SINE Alu 12 139 -10 6 752 231 308 0 0 chr11 21960772 21960837 -99883019 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 752 742 270 55 28 chr11 21960858 21961075 -99882781 - B4A SINE B4 -68 224 2 6 752 985 205 53 10 chr11 21961457 21961664 -99882192 + B3 SINE B2 1 216 0 6 752 409 228 32 32 chr11 21962279 21962374 -99881482 - B1F SINE Alu -12 137 43 6 752 683 217 43 6 chr11 21963862 21964024 -99879832 + URR1A DNA MER1_type 59 226 0 6 752 188 226 0 0 chr11 21964049 21964080 -99879776 - MIRm SINE MIR -38 238 208 6 752 272 238 0 31 chr11 21966785 21966850 -99877006 - ID4_ SINE ID -18 65 3 6 752 430 328 44 22 chr11 21967598 21967735 -99876121 - RSINE1 SINE B4 -21 144 5 6 752 341 275 0 55 chr11 21967776 21967790 -99876066 + ID4_ SINE ID 5 73 -10 6 752 349 254 0 0 chr11 21967790 21967849 -99876007 + tRNA-Ala-GCY_ tRNA tRNA 9 67 -8 6 752 238 236 131 61 chr11 21968024 21968123 -99875733 - PB1D10 SINE Alu -7 110 5 7 752 378 301 30 60 chr11 21969191 21969357 -99874499 + B4A SINE B4 1 161 -131 7 752 216 0 0 0 chr11 21969451 21969475 -99874381 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 752 938 250 58 25 chr11 21969880 21970122 -99873734 + MTE2a LTR MaLR 128 377 -2 7 752 471 153 11 23 chr11 21970980 21971067 -99872789 + PB1D9 SINE Alu 34 119 -1 7 752 243 0 0 0 chr11 21971188 21971215 -99872641 + (T)n Simple_repeat Simple_repeat 1 27 0 7 752 330 45 0 0 chr11 21971228 21971272 -99872584 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 7 752 330 249 89 47 chr11 21971973 21972100 -99871756 + PB1D10 SINE Alu 23 133 -15 7 752 223 230 335 0 chr11 21972386 21972538 -99871318 - MIRb SINE MIR -46 222 20 7 752 500 288 21 28 chr11 21972550 21972693 -99871163 + ID_B1 SINE B4 63 204 -20 7 752 260 283 34 142 chr11 21972586 21972707 -99871149 + B1_Mm SINE Alu 15 124 -23 7 752 280 268 189 31 chr11 21972707 21972834 -99871022 + RSINE1 SINE B4 2 148 -17 7 752 260 283 34 142 chr11 21972834 21972860 -99870996 + B1_Mm SINE Alu 125 146 -1 7 752 299 279 15 0 chr11 21973715 21973783 -99870073 + ID4 SINE ID 6 74 -9 7 752 259 306 71 0 chr11 21973957 21974042 -99869814 + B4A SINE B4 1 91 -201 7 752 33 0 0 0 chr11 21975941 21975974 -99867882 + AT_rich Low_complexity Low_complexity 1 33 0 7 752 322 102 0 28 chr11 21976087 21976158 -99867698 + (CAAA)n Simple_repeat Simple_repeat 4 72 0 7 752 207 0 0 0 chr11 21976727 21976750 -99867106 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 752 342 0 0 0 chr11 21978346 21978384 -99865472 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 752 27 29 0 0 chr11 21982543 21982577 -99861279 + AT_rich Low_complexity Low_complexity 1 34 0 7 752 30 27 0 0 chr11 21982612 21982649 -99861207 + AT_rich Low_complexity Low_complexity 1 37 0 7 752 834 251 49 0 chr11 21982651 21982834 -99861022 - B3 SINE B2 -5 211 20 7 752 606 265 70 11 chr11 21983067 21983254 -99860602 + B3A SINE B2 1 198 0 7 752 38 22 0 0 chr11 21983635 21983680 -99860176 + AT_rich Low_complexity Low_complexity 1 45 0 7 752 262 266 19 105 chr11 21983707 21983812 -99860044 - B3 SINE B2 -9 207 112 7 752 182 287 120 0 chr11 21984541 21984649 -99859207 - L2 LINE L2 -461 2958 2838 7 752 400 300 62 35 chr11 21985032 21985043 -99858813 - B4 SINE B4 -81 211 175 7 752 671 143 19 0 chr11 21985043 21985148 -99858708 - B1_Mur4 SINE Alu -34 116 10 7 752 400 300 62 35 chr11 21985148 21985177 -99858679 - B4 SINE B4 -81 174 63 7 752 266 287 100 33 chr11 21986084 21986174 -99857682 + MLT1G3 LTR MaLR 29 124 -471 7 752 260 273 20 20 chr11 21986221 21986367 -99857489 + L1MB1 LINE L1 5163 5308 -832 7 752 314 217 65 19 chr11 21986538 21986646 -99857210 + PB1D10 SINE Alu 1 113 -4 7 752 328 254 92 38 chr11 21986812 21986943 -99856913 + B1F2 SINE Alu 2 139 -10 7 752 770 199 165 12 chr11 21986945 21987199 -99856657 + L1MB1 LINE L1 5874 6166 -2 7 752 334 254 0 0 chr11 21987855 21987914 -99855942 + PB1D9 SINE Alu 1 59 -61 7 752 213 121 0 0 chr11 21988444 21988477 -99855379 + (CCCA)n Simple_repeat Simple_repeat 2 34 0 7 752 494 269 85 0 chr11 21988487 21988617 -99855239 - B1F SINE Alu -3 146 6 7 752 226 282 125 14 chr11 21989116 21989188 -99854668 - LTR87 LTR ERVL? -390 234 155 7 752 180 111 0 0 chr11 21989889 21989916 -99853940 + (TTA)n Simple_repeat Simple_repeat 1 27 0 7 752 553 306 12 48 chr11 21989936 21990101 -99853755 - RSINE1 SINE B4 -1 164 6 7 752 201 179 26 0 chr11 21990335 21990374 -99853482 + (TATG)n Simple_repeat Simple_repeat 3 42 0 7 752 412 289 40 32 chr11 21990378 21990503 -99853353 - B1F1 SINE Alu -17 132 7 7 752 360 0 0 0 chr11 21990963 21991003 -99852853 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 752 782 158 0 0 chr11 21991012 21991132 -99852724 - B3 SINE B2 -96 120 1 7 752 297 0 0 0 chr11 21991448 21991481 -99852375 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 752 276 242 46 92 chr11 21992378 21992487 -99851369 - PB1D7 SINE Alu -16 104 1 7 752 451 295 71 14 chr11 21992931 21993072 -99850784 + RSINE1 SINE B4 3 151 -14 7 752 379 366 102 0 chr11 21993166 21993352 -99850504 - Charlie1b DNA MER1_type -297 226 22 7 752 238 333 0 13 chr11 21993367 21993446 -99850410 - ID4_ SINE ID -3 80 3 7 752 452 308 25 0 chr11 21993639 21993700 -99850156 + ID SINE ID 20 83 -141 7 752 288 286 0 32 chr11 21993700 21993794 -99850062 + B1F SINE Alu 3 93 -56 7 752 497 250 125 0 chr11 21994370 21994498 -99849358 - B1F1 SINE Alu 0 149 6 7 752 330 274 31 31 chr11 21994675 21994773 -99849083 - PB1D10 SINE Alu -9 108 11 7 752 518 0 16 0 chr11 21994841 21994903 -99848953 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 7 752 453 353 47 16 chr11 21994903 21995096 -99848760 - B3 SINE B2 -16 200 2 7 752 26 30 0 0 chr11 21997652 21997685 -99846171 + AT_rich Low_complexity Low_complexity 1 33 0 7 752 348 283 32 38 chr11 21997704 21997744 -99846112 - RSINE1 SINE B4 -5 160 122 7 752 333 0 0 0 chr11 21997744 21997781 -99846075 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 752 348 283 32 38 chr11 21997781 21997898 -99845958 - RSINE1 SINE B4 -44 121 4 7 752 1174 56 0 0 chr11 21998267 21998409 -99845447 - B1_Mus1 SINE Alu -4 144 3 7 752 329 210 16 0 chr11 21998635 21998697 -99845159 - PB1 SINE Alu -17 110 48 7 752 27 29 0 0 chr11 21999175 21999209 -99844647 + AT_rich Low_complexity Low_complexity 1 34 0 7 752 240 91 63 127 chr11 21999438 21999501 -99844355 - PB1D10 SINE Alu -27 90 32 7 752 548 179 476 0 chr11 22001774 22001946 -99841910 - ORR1C1 LTR MaLR -51 327 74 1 752 622 256 32 6 chr11 22002674 22002831 -99841025 + RSINE1 SINE B4 1 161 -4 2 752 389 319 169 12 chr11 22003244 22003498 -99840358 + Charlie24 DNA MER1_type 550 843 -1607 3 752 194 290 97 0 chr11 22003554 22003616 -99840240 + MIR SINE MIR 94 161 -101 4 752 367 322 196 32 chr11 22003660 22004068 -99839788 + L2a LINE L2 2933 3407 -19 5 752 308 333 0 104 chr11 22004488 22004505 -99839351 + B4A SINE B4 78 222 -68 6 752 746 130 28 97 chr11 22004505 22004650 -99839206 + B1_Mur2 SINE Alu 10 144 -5 7 752 272 329 112 12 chr11 22006389 22006549 -99837307 - ID_B1 SINE B4 -13 211 36 8 752 216 0 0 0 chr11 22006681 22006705 -99837151 + (T)n Simple_repeat Simple_repeat 1 24 0 9 752 964 82 0 109 chr11 22006705 22006870 -99836986 - B1_Mus1 SINE Alu 0 148 2 1 752 260 270 63 47 chr11 22008043 22008189 -99835667 + L1M5 LINE L1 5594 5741 -499 1 752 365 246 57 43 chr11 22008373 22008513 -99835343 + Charlie1a DNA MER1_type 1138 1279 -176 1 752 609 248 136 63 chr11 22008555 22009143 -99834713 - L1M4 LINE L1 -1097 5049 4413 1 752 584 304 52 14 chr11 22009163 22009373 -99834483 - ID_B1 SINE B4 -4 220 3 1 752 1049 313 110 22 chr11 22009376 22010206 -99833650 - L1M4 LINE L1 -1716 4430 3528 1 752 234 314 45 68 chr11 22010249 22010355 -99833501 - B1F SINE Alu -16 104 1 1 752 484 275 101 26 chr11 22010358 22010586 -99833270 - L1M4 LINE L1 -2638 3508 3264 1 752 419 270 86 17 chr11 22011065 22011182 -99832674 - B4A SINE B4 0 292 168 1 752 278 260 41 0 chr11 22011230 22011303 -99832553 - Lx8 LINE L1 -133 7340 7265 1 752 23 0 0 0 chr11 22011554 22011577 -99832279 + AT_rich Low_complexity Low_complexity 1 23 0 1 752 319 314 91 55 chr11 22013792 22014011 -99829845 - Charlie7 DNA MER1_type -621 1991 1765 1 752 239 268 115 11 chr11 22014154 22014241 -99829615 + Charlie1a DNA MER1_type 924 1019 -436 2 752 265 317 95 53 chr11 22014326 22014516 -99829340 - Charlie7 DNA MER1_type -2360 252 55 1 752 237 362 38 0 chr11 22014728 22014808 -99829048 + ID4_ SINE ID 1 83 0 2 752 232 136 38 165 chr11 22014789 22014868 -99828988 + Tigger10 DNA Tigger 775 843 -1000 2 752 325 266 27 27 chr11 22015437 22015549 -99828307 - Charlie1 DNA MER1_type -5 2776 2665 2 752 1437 70 38 0 chr11 22015558 22015743 -99828113 + B2_Mm2 SINE B2 2 193 -2 2 752 980 128 92 0 chr11 22015751 22015915 -99827941 + B2_Mm1t SINE B2 1 179 -14 2 752 339 87 300 58 chr11 22015962 22016082 -99827774 + B2_Mm2 SINE B2 47 195 0 2 752 186 43 0 0 chr11 22016326 22016349 -99827507 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 2 752 464 319 17 0 chr11 22016355 22016471 -99827385 - RSINE1 SINE B4 -47 118 1 2 752 26 88 0 0 chr11 22016540 22016608 -99827248 + AT_rich Low_complexity Low_complexity 1 68 0 2 752 760 286 155 40 chr11 22016629 22017080 -99826776 - Charlie1 DNA MER1_type -489 2292 1790 2 752 237 241 155 0 chr11 22017495 22017553 -99826303 - ID4_ SINE ID -9 74 8 3 752 243 98 16 32 chr11 22017836 22017899 -99825957 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 3 752 583 241 140 6 chr11 22017909 22018080 -99825776 - B3 SINE B2 -21 195 2 3 752 902 266 9 5 chr11 22018104 22018319 -99825537 - ID_B1 SINE B4 -8 216 1 3 752 565 275 17 81 chr11 22019331 22019505 -99824351 - B4 SINE B4 -82 210 48 3 752 291 226 99 79 chr11 22019696 22019797 -99824059 + PB1D10 SINE Alu 15 117 0 3 752 252 345 67 138 chr11 22019841 22020080 -99823776 + B4 SINE B4 26 247 -45 3 11 5676 82 0 0 chr11 22020095 22021142 -99822714 + L1_Mus3 LINE L1 5076 6122 -516 3 753 951 75 95 42 chr11 22021145 22021313 -99822543 + L1_Mus3 LINE L1 6459 6635 -1 3 753 248 301 26 26 chr11 22021321 22021437 -99822419 + L1MC4a LINE L1 3489 3604 -2542 3 753 231 306 0 0 chr11 22021579 22021641 -99822215 + ID4 SINE ID 1 62 -21 3 753 225 0 0 0 chr11 22021641 22021666 -99822190 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 753 268 235 192 10 chr11 22021725 22021824 -99822032 + Lx8 LINE L1 6258 6374 -1099 4 753 1706 276 186 15 chr11 22021924 22022661 -99821195 + Lx8 LINE L1 6326 7188 -285 4 753 336 311 8 176 chr11 22022687 22023062 -99820794 + Lx8 LINE L1 7153 7464 -9 4 753 279 347 65 4 chr11 22023089 22023352 -99820504 + L1MC4a LINE L1 3889 4167 -1979 3 753 441 258 120 0 chr11 22024190 22024357 -99819499 + L1MDa LINE L1 1806 1992 -4641 4 753 195 42 0 0 chr11 22024360 22024384 -99819472 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 4 753 271 337 11 11 chr11 22024384 22024477 -99819379 - ID_B1 SINE B4 -44 180 88 4 753 21 0 0 0 chr11 22024991 22025012 -99818844 + AT_rich Low_complexity Low_complexity 1 21 0 4 753 389 292 0 0 chr11 22026798 22026894 -99816962 + MTE2b LTR MaLR 3 98 -281 4 753 306 344 175 25 chr11 22026911 22027346 -99816510 + L1MC4a LINE L1 5552 6051 -1831 3 753 405 109 0 0 chr11 22027793 22027857 -99815999 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 753 462 269 161 21 chr11 22028520 22028706 -99815150 - ID_B1 SINE B4 -10 214 3 4 753 360 309 10 0 chr11 22029393 22029490 -99814366 + PB1D10 SINE Alu 19 116 -1 5 753 471 100 0 0 chr11 22030346 22030416 -99813440 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 5 753 24 32 0 0 chr11 22030541 22030572 -99813284 + AT_rich Low_complexity Low_complexity 1 31 0 5 753 493 265 82 11 chr11 22030804 22030987 -99812869 + B3A SINE B2 3 198 0 5 753 231 227 139 25 chr11 22031001 22031123 -99812733 - L1MEe LINE L1 -3718 1136 1001 5 753 213 268 197 0 chr11 22031999 22032070 -99811786 + B4 SINE B4 1 85 -207 5 753 414 0 0 0 chr11 22032084 22032130 -99811726 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 753 261 0 0 0 chr11 22032130 22032158 -99811698 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 753 358 318 85 45 chr11 22032626 22032827 -99811029 - L1MC5 LINE L1 -733 7228 7020 5 753 5255 92 6 52 chr11 22032977 22033690 -99810166 - L1_Mm LINE L1 -93 5790 5114 5 753 1094 110 0 0 chr11 22033690 22033836 -99810020 - B1_Mm SINE Alu 0 147 2 6 753 5255 92 6 52 chr11 22033836 22033933 -99809923 - L1_Mm LINE L1 -770 5113 5017 5 753 5838 89 2 4 chr11 22033933 22034754 -99809102 + L1_Mus3 LINE L1 5816 6635 -3 6 753 612 202 29 1 chr11 22035295 22035463 -99808393 - B3 SINE B2 -5 188 1 6 753 1525 85 93 4 chr11 22035471 22035707 -99808149 - L1_Mus3 LINE L1 -2 6636 6380 6 753 434 273 10 0 chr11 22036829 22036928 -99806928 + PB1D10 SINE Alu 1 100 -17 6 753 435 259 17 8 chr11 22037245 22037362 -99806494 - PB1D9 SINE Alu -2 118 1 6 753 258 300 138 0 chr11 22037402 22037482 -99806374 - B4 SINE B4 -123 169 79 6 753 456 158 20 59 chr11 22037705 22037806 -99806050 - Lx3C LINE L1 -2 6974 6878 6 753 219 279 0 69 chr11 22038429 22038602 -99805254 + (TATTG)n Simple_repeat Simple_repeat 5 165 0 6 753 261 0 0 0 chr11 22038810 22038839 -99805017 + (A)n Simple_repeat Simple_repeat 1 29 0 6 753 390 57 0 0 chr11 22038966 22039019 -99804837 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 753 715 176 28 14 chr11 22039020 22039164 -99804692 - ORR1D1 LTR MaLR -227 147 2 7 753 298 307 105 26 chr11 22039449 22039783 -99804073 - L1_Mur3 LINE L1 -4068 1779 1431 7 753 477 110 0 0 chr11 22041217 22041290 -99802566 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 753 527 185 5 0 chr11 22041339 22041473 -99802383 - L1M4 LINE L1 -683 5491 5349 7 753 22 35 0 0 chr11 22041575 22041604 -99802252 + AT_rich Low_complexity Low_complexity 1 29 0 7 753 534 183 57 19 chr11 22041727 22041833 -99802023 - B3 SINE B2 -86 112 3 7 753 254 265 189 22 chr11 22041922 22042107 -99801749 - L1M4 LINE L1 -1338 4808 4593 7 753 311 296 28 0 chr11 22042650 22042792 -99801064 - L1MEc LINE L1 -1794 4525 4380 7 753 410 345 63 29 chr11 22042825 22043141 -99800715 - L1MEc LINE L1 -4344 2056 1730 7 753 281 192 0 0 chr11 22043260 22043312 -99800544 - L1MEc LINE L1 -4994 1406 1355 7 753 230 207 0 17 chr11 22043315 22043374 -99800482 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 753 276 319 130 18 chr11 22043456 22043625 -99800231 - L1MEc LINE L1 -5134 1266 1079 7 753 372 330 57 23 chr11 22044018 22044319 -99799537 - L1MEc LINE L1 -5547 853 543 7 753 1642 143 48 63 chr11 22044463 22044911 -99798945 + RMER17C LTR ERVK 16 439 -519 7 753 332 311 66 0 chr11 22045058 22045209 -99798647 - L1MEc LINE L1 -6203 197 37 7 753 1838 32 0 0 chr11 22045526 22045744 -99798112 - L1Md_F2 LINE L1 -14 6568 6351 8 753 537 317 118 46 chr11 22045874 22046291 -99797565 + Lx8 LINE L1 7027 7473 0 8 753 26 50 0 0 chr11 22047141 22047181 -99796675 + AT_rich Low_complexity Low_complexity 1 40 0 8 753 524 157 0 0 chr11 22047602 22047685 -99796171 + BC1_Mm scRNA scRNA 1 83 -69 8 753 28 29 0 0 chr11 22047831 22047866 -99795990 + AT_rich Low_complexity Low_complexity 1 35 0 8 753 315 345 120 23 chr11 22047977 22048152 -99795704 + B4A SINE B4 55 246 -46 8 753 291 309 15 0 chr11 22048312 22048380 -99795476 - B4A SINE B4 -156 136 68 8 753 322 302 155 0 chr11 22048428 22048544 -99795312 - B3 SINE B2 -1 215 82 8 753 307 38 38 19 chr11 22048813 22048866 -99794990 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 8 753 236 294 11 11 chr11 22049283 22049376 -99794480 + Lx7 LINE L1 7585 7677 -19 8 753 332 257 28 19 chr11 22050928 22051035 -99792821 - Lx7 LINE L1 -818 6878 6771 9 753 196 290 45 91 chr11 22052735 22052845 -99791011 - L2c LINE L2 -1 3386 3282 9 753 1201 101 45 6 chr11 22052959 22053138 -99790718 + B2_Mm2 SINE B2 2 187 -8 9 753 493 282 14 14 chr11 22053403 22053547 -99790309 - RSINE1 SINE B4 -19 146 3 9 753 357 297 80 27 chr11 22053590 22053777 -99790079 - B3A SINE B2 0 198 2 9 753 21 0 0 0 chr11 22054904 22054925 -99788931 + AT_rich Low_complexity Low_complexity 1 21 0 9 753 459 308 48 37 chr11 22056185 22056374 -99787482 - B3A SINE B2 -7 191 1 9 753 482 299 14 0 chr11 22056474 22056607 -99787249 - B1F1 SINE Alu -9 140 1 9 753 278 386 62 8 chr11 22056607 22056633 -99787223 - B4 SINE B4 -203 89 57 9 753 1503 295 96 16 chr11 22056648 22057430 -99786426 + Lx7 LINE L1 6419 7263 -433 9 753 496 229 28 0 chr11 22057586 22057695 -99786161 - ID_B1 SINE B4 -5 219 108 1 753 248 297 43 0 chr11 22058262 22058400 -99785456 - L1M5 LINE L1 -1599 4547 4404 1 753 897 114 8 8 chr11 22058438 22058570 -99785286 - B1_Mur4 SINE Alu -17 133 2 1 753 254 183 14 14 chr11 22058799 22058871 -99784985 - L1M5 LINE L1 -2206 3940 3869 1 753 313 234 0 0 chr11 22059246 22059310 -99784546 - ID2 SINE ID 0 83 20 1 753 463 297 137 0 chr11 22059873 22060055 -99783801 - LTR87 LTR ERVL? -120 504 298 1 753 237 65 0 0 chr11 22060084 22060115 -99783741 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 1 753 327 294 146 6 chr11 22061627 22061798 -99782058 + L1_Mur3 LINE L1 2081 2275 -3605 1 753 253 246 164 0 chr11 22061831 22061892 -99781964 + RSINE1 SINE B4 92 162 -3 1 753 249 57 0 0 chr11 22061907 22061942 -99781914 + (CTA)n Simple_repeat Simple_repeat 1 35 0 1 753 24 0 0 0 chr11 22061970 22061994 -99781862 + AT_rich Low_complexity Low_complexity 1 24 0 1 753 2204 252 36 47 chr11 22062046 22062670 -99781186 + L1_Mur3 LINE L1 3651 4275 -1605 1 753 983 238 40 0 chr11 22062670 22062872 -99780984 - B3 SINE B2 -6 210 1 1 753 2204 252 36 47 chr11 22062872 22063206 -99780650 + L1_Mur3 LINE L1 4276 4598 -1282 1 753 318 304 171 14 chr11 22063214 22063354 -99780502 + RSINE1 SINE B4 2 163 -2 1 753 576 312 26 58 chr11 22063427 22063538 -99780318 + L1_Rod LINE L1 4651 4761 -1385 1 753 519 82 0 0 chr11 22063538 22063611 -99780245 + (TAA)n Simple_repeat Simple_repeat 3 75 0 1 753 1190 317 50 46 chr11 22063611 22064635 -99779221 + L1_Rod LINE L1 4708 5746 -101 1 753 186 43 0 0 chr11 22064635 22064658 -99779198 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 753 2647 259 113 40 chr11 22064915 22065971 -99777885 + Lx8 LINE L1 6097 7229 -244 1 753 4074 223 110 93 chr11 22066135 22066683 -99777173 + Lx7 LINE L1 6316 6902 -794 1 753 243 166 36 36 chr11 22066683 22066754 -99777102 + B3 SINE B2 1 71 -124 1 753 4074 223 110 93 chr11 22066754 22067493 -99776363 + Lx7 LINE L1 6903 7696 0 1 753 22 35 0 0 chr11 22067633 22067662 -99776194 + AT_rich Low_complexity Low_complexity 1 29 0 1 753 1052 201 20 0 chr11 22067788 22067992 -99775864 + B3 SINE B2 1 208 -8 1 753 239 247 185 0 chr11 22068208 22068289 -99775567 - B4A SINE B4 -87 205 110 1 753 261 286 0 0 chr11 22068306 22068376 -99775480 - B4 SINE B4 -219 73 4 1 753 1038 162 96 0 chr11 22069889 22070086 -99773770 + B3 SINE B2 1 216 0 1 753 42 36 0 0 chr11 22070369 22070425 -99773431 + AT_rich Low_complexity Low_complexity 1 56 0 1 753 259 317 9 65 chr11 22070805 22070913 -99772943 + PB1D7 SINE Alu 19 120 0 1 753 1174 202 14 0 chr11 22071746 22071954 -99771902 + MTD LTR MaLR 1 211 -208 1 753 2059 125 143 24 chr11 22071954 22072372 -99771484 + Lx2B LINE L1 6532 6999 -1 1 753 572 226 158 16 chr11 22072383 22072567 -99771289 + MTD LTR MaLR 197 406 -13 1 753 354 284 39 10 chr11 22073228 22073331 -99770525 + PB1D10 SINE Alu 8 113 -4 1 753 209 171 98 0 chr11 22073983 22074024 -99769832 + MIRm SINE MIR 87 131 -145 1 753 180 0 0 0 chr11 22075780 22075800 -99768056 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 753 382 384 96 26 chr11 22076402 22076830 -99767026 + L1M4c LINE L1 1274 1731 -4653 1 753 966 255 55 13 chr11 22077519 22077757 -99766099 + B4A SINE B4 44 291 -1 1 753 573 296 250 21 chr11 22077758 22078234 -99765622 + L1M4c LINE L1 2819 3403 -2976 1 753 445 299 36 72 chr11 22078494 22078660 -99765196 - B3 SINE B2 -34 161 2 1 753 268 281 70 8 chr11 22078715 22078844 -99765012 - L1MB4 LINE L1 -94 6086 5950 1 753 309 289 69 26 chr11 22078868 22079099 -99764757 - L1M5 LINE L1 -1507 4639 4399 1 753 3152 60 9 12 chr11 22079244 22079667 -99764189 - L1_Mus3 LINE L1 -4 6634 6213 1 753 358 326 93 41 chr11 22079987 22080233 -99763623 - L1M5 LINE L1 -2789 3357 3099 1 753 397 262 37 46 chr11 22080322 22080430 -99763426 + B4 SINE B4 112 218 -74 1 753 327 335 97 32 chr11 22080483 22080761 -99763095 - L1M5 LINE L1 -3149 2997 2702 1 753 2525 80 0 6 chr11 22080815 22081155 -99762701 - L1_Mus1 LINE L1 0 6567 6230 1 753 205 330 171 38 chr11 22081434 22082019 -99761837 + L2a LINE L2 2701 3421 -5 1 753 321 47 0 0 chr11 22082572 22082615 -99761241 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 753 256 228 145 26 chr11 22082680 22082797 -99761059 - Charlie1 DNA MER1_type -17 2764 2634 1 753 4271 48 4 2 chr11 22082870 22083430 -99760426 + L1Md_F3 LINE L1 5026 5586 -297 1 753 8044 43 12 0 chr11 22083430 22084416 -99759440 + L1Md_F3 LINE L1 5587 6584 0 1 753 654 301 4 27 chr11 22084423 22084679 -99759177 + Lx7 LINE L1 7101 7350 -346 1 753 191 36 36 0 chr11 22084688 22084716 -99759140 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 753 1433 289 108 43 chr11 22084895 22085750 -99758106 - Charlie1 DNA MER1_type -155 2626 1717 1 753 1063 231 10 0 chr11 22088456 22088664 -99755192 - B3 SINE B2 -6 210 1 1 753 876 184 41 4 chr11 22088813 22089017 -99754839 + ORR1C1 LTR MaLR 1 225 -134 1 753 770 31 10 0 chr11 22089250 22089347 -99754509 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 1 753 1182 270 243 33 chr11 22089587 22090464 -99753392 + L1MCa LINE L1 1 1061 -5447 1 753 548 276 48 67 chr11 22091274 22091484 -99752372 - B4A SINE B4 -4 288 83 1 753 439 284 17 25 chr11 22091484 22091603 -99752253 + RSINE1 SINE B4 48 165 0 1 753 395 317 24 42 chr11 22091716 22091884 -99751972 + LTR82A LTR ERVL 558 722 -150 1 753 693 194 15 7 chr11 22092118 22092253 -99751603 - B1F SINE Alu -7 142 7 1 753 264 59 0 0 chr11 22092360 22092394 -99751462 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 753 232 261 15 0 chr11 22093354 22093419 -99750437 + ID4_ SINE ID 18 83 0 1 753 525 218 0 0 chr11 22094052 22094176 -99749680 + (CATA)n Simple_repeat Simple_repeat 2 125 0 1 753 332 0 0 0 chr11 22094177 22094214 -99749642 + HAL1-3A_ME LINE L1 1976 2012 -846 1 753 2096 94 15 19 chr11 22094301 22094625 -99749231 - Lx LINE L1 -3 6651 6329 1 753 198 103 0 0 chr11 22095624 22095653 -99748203 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1 753 21 0 0 0 chr11 22096659 22096680 -99747176 + AT_rich Low_complexity Low_complexity 1 21 0 1 753 298 324 64 9 chr11 22097704 22097813 -99746043 - PB1D10 SINE Alu -1 116 2 1 753 339 96 0 0 chr11 22098477 22098529 -99745327 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 753 22 0 0 0 chr11 22098945 22098967 -99744889 + AT_rich Low_complexity Low_complexity 1 22 0 1 753 543 195 0 0 chr11 22100800 22100913 -99742943 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 753 23 78 0 0 chr11 22101553 22101604 -99742252 + AT_rich Low_complexity Low_complexity 1 51 0 1 753 34 42 0 0 chr11 22101670 22101718 -99742138 + AT_rich Low_complexity Low_complexity 1 48 0 1 753 416 313 15 15 chr11 22102767 22102900 -99740956 + RSINE1 SINE B4 30 162 -3 1 753 326 207 22 33 chr11 22104072 22104252 -99739604 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 753 259 25 24 24 chr11 22104294 22104335 -99739521 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 753 250 209 73 15 chr11 22104581 22104649 -99739207 + ID4 SINE ID 4 75 -8 1 753 215 167 55 18 chr11 22104660 22104715 -99739141 + GA-rich Low_complexity Low_complexity 4 60 0 1 753 4684 65 2 8 chr11 22104920 22105537 -99738319 - L1Md_F2 LINE L1 -5 6577 5965 1 753 691 235 144 70 chr11 22107404 22107633 -99736223 - MTE2a LTR MaLR -57 322 77 1 753 379 276 10 20 chr11 22107696 22107796 -99736060 + B1F2 SINE Alu 49 147 -2 1 753 238 241 0 0 chr11 22107806 22107860 -99735996 - MTE2a LTR MaLR -291 88 35 1 753 312 230 129 10 chr11 22107977 22108078 -99735778 - B1F SINE Alu -8 141 29 1 753 968 116 0 0 chr11 22108082 22108220 -99735636 + B1_Mus2 SINE Alu 5 142 -5 1 753 216 0 0 0 chr11 22108237 22108261 -99735595 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 753 22347 104 16 9 chr11 22108390 22114337 -99729519 + L1_Mus1 LINE L1 584 6654 0 1 753 206 75 50 0 chr11 22114341 22114381 -99729475 + (CAAAAA)n Simple_repeat Simple_repeat 5 46 0 1 753 575 265 23 29 chr11 22114381 22114552 -99729304 + B3A SINE B2 27 196 -2 1 753 275 248 72 64 chr11 22114568 22114693 -99729163 + L2 LINE L2 2781 2906 -513 1 753 4342 92 22 3 chr11 22115481 22116242 -99727614 - Lx7 LINE L1 -1862 5834 4988 1 753 774 67 0 8 chr11 22116244 22116364 -99727492 + L1_Mus4 LINE L1 6513 6631 -5 1 753 351 101 89 0 chr11 22116908 22116987 -99726869 - L1_Mus3 LINE L1 -2 6636 6551 1 753 884 244 61 27 chr11 22117122 22117383 -99726473 + RMER1C Other Other 1054 1323 -19 1 753 514 284 69 21 chr11 22117595 22117739 -99726117 - RSINE1 SINE B4 -10 155 5 1 753 280 279 49 49 chr11 22118174 22118317 -99725539 + Lx8 LINE L1 5721 5863 -1610 1 753 246 309 0 0 chr11 22118329 22118397 -99725459 + G-rich Low_complexity Low_complexity 1 68 0 1 753 370 176 88 0 chr11 22118632 22118700 -99725156 + MT2A LTR ERVL 1 74 -459 1 753 341 186 411 77 chr11 22118797 22118993 -99724863 + MT2A LTR ERVL 65 447 -154 1 753 387 0 0 0 chr11 22118993 22119036 -99724820 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 753 294 71 0 0 chr11 22119038 22119080 -99724776 + MT2A LTR ERVL 490 531 -2 1 753 747 318 28 60 chr11 22119080 22119311 -99724545 + B4A SINE B4 66 288 -4 1 753 344 284 0 73 chr11 22119342 22119354 -99724502 + PB1D10 SINE Alu 5 16 -101 1 753 1182 29 0 0 chr11 22119354 22119492 -99724364 - B1_Mm SINE Alu -9 138 1 1 753 361 259 21 63 chr11 22119492 22119589 -99724267 + PB1D7 SINE Alu 17 109 -11 1 753 243 0 0 0 chr11 22119589 22119616 -99724240 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 753 200 262 0 0 chr11 22119622 22119664 -99724192 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 753 25 0 0 0 chr11 22119722 22119747 -99724109 + AT_rich Low_complexity Low_complexity 1 25 0 1 753 393 288 35 26 chr11 22119979 22120093 -99723763 - MER46C DNA MER2_type -130 208 94 1 753 213 367 0 12 chr11 22120195 22120275 -99723581 + L2c LINE L2 3130 3208 -179 1 753 22 0 0 0 chr11 22120887 22120909 -99722947 + GC_rich Low_complexity Low_complexity 1 22 0 1 753 21 0 0 0 chr11 22121453 22121474 -99722382 + GC_rich Low_complexity Low_complexity 1 21 0 1 753 2207 220 97 80 chr11 22121831 22121989 -99721867 - RCHARR1 DNA MER1_type -8 966 838 1 753 1260 20 7 0 chr11 22121989 22122135 -99721721 - B1_Mus2 SINE Alu 0 147 1 1 753 2207 220 97 80 chr11 22122135 22122747 -99721109 - RCHARR1 DNA MER1_type -137 837 183 1 753 333 0 0 0 chr11 22122932 22122969 -99720887 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 753 194 385 27 18 chr11 22123079 22123190 -99720666 + L2c LINE L2 3054 3165 -222 2 753 22 35 0 0 chr11 22123982 22124011 -99719845 + AT_rich Low_complexity Low_complexity 1 29 0 2 753 748 221 0 0 chr11 22124209 22124349 -99719507 + B1_Mur2 SINE Alu 1 140 -9 2 753 660 306 13 86 chr11 22124778 22125093 -99718763 - B4A SINE B4 0 292 1 2 753 184 394 100 21 chr11 22125193 22125333 -99718523 + MIRb SINE MIR 79 229 -39 2 753 331 342 36 0 chr11 22125427 22125538 -99718318 + PB1D7 SINE Alu 1 115 -5 2 753 224 303 142 43 chr11 22126022 22126184 -99717672 + L2a LINE L2 3249 3426 0 2 753 221 257 445 0 chr11 22126911 22127012 -99716844 + B1_Mus1 SINE Alu 3 148 0 2 753 296 280 27 0 chr11 22127722 22127797 -99716059 + B4A SINE B4 2 78 -214 2 753 207 262 0 35 chr11 22127805 22127892 -99715964 + (CCCCAA)n Simple_repeat Simple_repeat 2 85 0 2 753 531 240 201 5 chr11 22127909 22128093 -99715763 + B4A SINE B4 67 286 -6 2 753 348 24 0 0 chr11 22128134 22128175 -99715681 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 753 297 51 0 0 chr11 22128226 22128265 -99715591 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 753 271 292 111 11 chr11 22128485 22128575 -99715281 - B4A SINE B4 -2 290 192 2 753 627 259 14 130 chr11 22128556 22128840 -99715016 - B4A SINE B4 -41 251 1 2 753 407 240 82 8 chr11 22129177 22129299 -99714557 - B1F1 SINE Alu -18 131 1 2 753 411 285 16 8 chr11 22129718 22129842 -99714014 + PB1 SINE Alu 1 125 -2 2 753 23 0 0 0 chr11 22130483 22130506 -99713350 + AT_rich Low_complexity Low_complexity 1 23 0 2 753 453 19 0 0 chr11 22131374 22131428 -99712428 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 753 458 259 138 0 chr11 22131441 22131557 -99712299 - B3A SINE B2 -65 133 2 2 753 195 129 0 0 chr11 22131959 22131990 -99711866 + (A)n Simple_repeat Simple_repeat 1 31 0 2 753 317 202 266 41 chr11 22132856 22133016 -99710840 + MTEb LTR MaLR 176 371 -8 2 753 315 122 0 0 chr11 22133016 22133065 -99710791 + (A)n Simple_repeat Simple_repeat 1 49 0 2 753 28 48 0 0 chr11 22133168 22133210 -99710646 + AT_rich Low_complexity Low_complexity 1 42 0 2 753 275 293 145 8 chr11 22133600 22133724 -99710132 + B1F2 SINE Alu 1 141 -8 2 753 321 291 9 35 chr11 22133617 22133731 -99710125 + ID_B1 SINE B4 113 223 -1 2 753 3303 222 90 68 chr11 22134156 22135448 -99708408 + RMER1A Other Other 1 1018 -12 2 753 244 328 30 0 chr11 22135455 22135522 -99708334 + tRNA-Ala-GCY_ tRNA tRNA 1 69 -6 2 753 209 330 22 0 chr11 22135984 22136075 -99707781 - MIR SINE MIR -61 201 109 2 753 189 236 82 92 chr11 22136129 22136227 -99707629 + L2a LINE L2 3330 3426 0 2 753 866 216 32 0 chr11 22136697 22136887 -99706969 + B3 SINE B2 13 208 -8 2 753 616 191 140 52 chr11 22136905 22137098 -99706758 + B3 SINE B2 1 210 -6 2 753 821 141 163 50 chr11 22137867 22138069 -99705787 - URR1A DNA MER1_type -1 225 1 2 753 273 306 102 0 chr11 22138100 22138208 -99705648 + MIR SINE MIR 87 205 -57 2 753 384 40 0 0 chr11 22138482 22138532 -99705324 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 753 596 165 0 9 chr11 22138599 22138715 -99705141 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 2 753 247 162 0 0 chr11 22138738 22138775 -99705081 - U2 snRNA snRNA -151 37 1 2 753 21 0 0 0 chr11 22139546 22139567 -99704289 + AT_rich Low_complexity Low_complexity 1 21 0 2 753 1213 151 26 0 chr11 22139618 22139810 -99704046 + B3 SINE B2 5 201 -15 2 753 358 339 157 16 chr11 22140555 22141028 -99702828 - L2b LINE L2 -162 3225 2683 2 753 2531 222 243 25 chr11 22141042 22141886 -99701970 + RMER1A Other Other 1 1028 -2 2 753 664 274 96 7 chr11 22142575 22142812 -99701044 + B4 SINE B4 5 274 -18 2 753 366 23 0 0 chr11 22142818 22142861 -99700995 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 753 367 304 51 25 chr11 22142876 22142994 -99700862 + B4A SINE B4 2 122 -170 2 753 1133 88 0 7 chr11 22143098 22143246 -99700610 + B1_Mus1 SINE Alu 2 148 0 2 753 198 136 0 0 chr11 22143246 22143290 -99700566 + (A)n Simple_repeat Simple_repeat 1 44 0 2 753 249 139 0 0 chr11 22143342 22143385 -99700471 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 753 1161 0 0 0 chr11 22143419 22143548 -99700308 + (GGGAGA)n Simple_repeat Simple_repeat 3 131 0 2 753 619 256 139 106 chr11 22143915 22144282 -99699574 + MTE2a LTR MaLR 1 379 0 2 753 392 298 181 8 chr11 22144386 22144623 -99699233 + B4A SINE B4 1 278 -14 2 753 773 308 48 51 chr11 22145553 22145888 -99697968 - MER2 DNA MER2_type -11 334 1 2 753 225 0 0 0 chr11 22146692 22146717 -99697139 + (A)n Simple_repeat Simple_repeat 1 25 0 2 753 379 232 27 34 chr11 22146728 22146875 -99696981 + L1ME2 LINE L1 5756 5901 -263 2 753 318 268 93 13 chr11 22146936 22147087 -99696769 + L1ME2 LINE L1 5905 6067 -97 2 753 940 207 169 56 chr11 22147140 22147442 -99696414 + ORR1B2 LTR MaLR 1 336 -31 2 753 380 296 8 17 chr11 22147507 22147624 -99696232 + PB1D10 SINE Alu 2 117 0 2 753 207 322 15 61 chr11 22147892 22147958 -99695898 + L2 LINE L2 460 522 -2897 2 753 651 299 79 0 chr11 22148124 22148338 -99695518 + B4A SINE B4 2 232 -60 2 753 234 152 0 0 chr11 22148853 22148912 -99694944 + A-rich Low_complexity Low_complexity 1 59 0 2 753 228 255 43 0 chr11 22149275 22149322 -99694534 + ID SINE ID 26 74 -150 2 753 461 320 46 38 chr11 22149356 22149596 -99694260 + L1MEe LINE L1 15 256 -4598 2 753 264 77 0 0 chr11 22149664 22149703 -99694153 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 753 201 74 0 0 chr11 22149834 22149861 -99693995 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 753 205 175 16 66 chr11 22150065 22150101 -99693755 + polypyrimidine Low_complexity Low_complexity 26 61 0 2 753 4167 111 60 66 chr11 22150101 22150861 -99692995 + RMER6A LTR ERVK 1 756 0 2 753 205 175 16 66 chr11 22150861 22150885 -99692971 + polypyrimidine Low_complexity Low_complexity 4 25 0 2 753 886 117 19 7 chr11 22150890 22151045 -99692811 + (TTCCC)n Simple_repeat Simple_repeat 2 158 0 2 754 503 245 91 28 chr11 22151744 22151887 -99691969 - MER5B DNA MER1_type -12 166 15 2 754 348 219 0 52 chr11 22152242 22152319 -99691537 + ID4 SINE ID 2 74 -9 2 754 223 257 13 67 chr11 22152845 22152920 -99690936 + B1F SINE Alu 79 149 0 2 754 956 160 165 0 chr11 22153235 22153429 -99690427 - URR1A DNA MER1_type 0 226 1 2 754 243 369 134 23 chr11 22153447 22153619 -99690237 - L2b LINE L2 -7 3368 3178 2 754 427 277 184 5 chr11 22154020 22154216 -99689640 + Lx8 LINE L1 6883 7113 -360 2 754 207 0 0 0 chr11 22154282 22154305 -99689551 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 754 297 0 0 0 chr11 22154305 22154337 -99689519 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 754 258 0 71 0 chr11 22154517 22154559 -99689297 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 2 754 1117 67 0 0 chr11 22154559 22154693 -99689163 - B1_Mm SINE Alu -13 134 1 2 754 35 41 0 0 chr11 22154763 22154812 -99689044 + AT_rich Low_complexity Low_complexity 1 49 0 2 754 531 224 87 40 chr11 22155910 22156059 -99687797 + B3A SINE B2 40 195 -3 2 754 256 183 50 0 chr11 22157819 22157879 -99685977 + L1VL1 LINE L1 217 279 -6359 2 754 29662 103 11 2 chr11 22157878 22163092 -99680764 + L1VL1 LINE L1 541 5809 -74 2 754 1702 120 11 4 chr11 22163094 22163361 -99680495 + L1_Mus3 LINE L1 6366 6634 -4 2 754 369 0 0 0 chr11 22163436 22163477 -99680379 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 754 678 274 145 0 chr11 22163923 22164171 -99679685 + B4A SINE B4 1 284 -8 2 754 1485 303 97 85 chr11 22164445 22165403 -99678453 + MTE-int LTR MaLR 604 1573 -7 2 754 700 267 113 26 chr11 22165540 22165771 -99678085 + B4A SINE B4 1 251 -41 2 754 698 250 173 54 chr11 22166253 22166680 -99677176 + L1MCa LINE L1 1633 2110 -4398 2 754 452 245 107 7 chr11 22166786 22166926 -99676930 + B3 SINE B2 46 199 -17 2 754 344 89 0 0 chr11 22167020 22167065 -99676791 + HAL1-3A_ME LINE L1 1972 2016 -842 2 754 1101 58 42 104 chr11 22167776 22167968 -99675888 + B2_Mm2 SINE B2 2 181 -14 2 754 421 165 143 19 chr11 22168703 22168808 -99675048 + PB1D9 SINE Alu 1 118 -2 2 754 563 186 48 8 chr11 22168968 22169077 -99674779 + L1MCa LINE L1 4076 4184 -2137 2 754 184 0 62 31 chr11 22169077 22169109 -99674747 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2 754 563 186 48 8 chr11 22169109 22169124 -99674732 + L1MCa LINE L1 4185 4205 -2116 2 754 342 0 0 0 chr11 22169477 22169515 -99674341 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 754 264 292 94 12 chr11 22169696 22169866 -99673990 + L1MD3 LINE L1 7257 7440 -555 2 754 514 260 103 0 chr11 22170110 22170256 -99673600 - MER119 DNA MER1_type -253 330 170 2 754 340 244 176 0 chr11 22170269 22170400 -99673456 + RSINE1 SINE B4 12 165 0 2 754 369 256 0 58 chr11 22170592 22170729 -99673127 + (TATAG)n Simple_repeat Simple_repeat 4 132 0 2 754 27 0 0 0 chr11 22170921 22170948 -99672908 + AT_rich Low_complexity Low_complexity 1 27 0 2 754 3969 47 2 8 chr11 22172442 22172938 -99670918 - L1_Mus1 LINE L1 0 6567 6075 2 754 592 211 0 27 chr11 22173093 22173205 -99670651 + B3A SINE B2 2 110 -88 2 754 311 294 83 53 chr11 22173205 22173226 -99670630 + B4 SINE B4 2 138 -154 2 754 256 268 0 47 chr11 22173319 22173405 -99670451 + GA-rich Low_complexity Low_complexity 4 85 0 2 754 557 215 79 36 chr11 22174069 22174209 -99669647 - B1F SINE Alu -1 148 3 2 754 232 196 22 0 chr11 22174211 22174257 -99669599 - MER58C DNA MER1_type -11 204 158 3 754 365 271 100 27 chr11 22174660 22174763 -99669093 + RSINE1 SINE B4 12 124 -41 3 754 324 0 0 0 chr11 22174763 22174799 -99669057 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 754 621 235 155 71 chr11 22174807 22175059 -99668797 + Lx9 LINE L1 6613 6885 -759 3 754 240 69 0 79 chr11 22175138 22175201 -99668655 + (CAAAAA)n Simple_repeat Simple_repeat 3 60 0 3 754 22 56 0 0 chr11 22175639 22175675 -99668181 + AT_rich Low_complexity Low_complexity 1 36 0 3 754 1965 118 106 33 chr11 22176273 22176352 -99667504 + ORR1B1 LTR MaLR 1 81 -313 3 754 579 122 0 0 chr11 22176352 22176442 -99667414 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 754 1965 118 106 33 chr11 22176442 22176465 -99667391 + ORR1B1 LTR MaLR 82 108 -286 3 754 2795 185 143 18 chr11 22176465 22177120 -99666736 + RMER19A LTR ERVK 1 737 0 3 754 1965 118 106 33 chr11 22177120 22177383 -99666473 + ORR1B1 LTR MaLR 109 394 0 3 754 269 358 139 16 chr11 22177383 22177627 -99666229 + L2 LINE L2 1944 2217 -1202 3 754 3138 60 0 2 chr11 22177763 22178166 -99665690 + L1Md_F2 LINE L1 6176 6577 -5 3 754 243 0 0 0 chr11 22178551 22178578 -99665278 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 3 754 1079 269 65 46 chr11 22178581 22178994 -99664862 + Lx8 LINE L1 6338 6758 -715 3 754 1087 254 191 6 chr11 22178998 22179339 -99664517 - MTD LTR MaLR 0 419 16 3 754 490 303 86 15 chr11 22179371 22179639 -99664217 + Lx8 LINE L1 6883 7169 -304 3 754 1077 88 0 7 chr11 22180315 22180463 -99663393 - B1_Mus2 SINE Alu 0 147 1 3 754 840 215 38 24 chr11 22180621 22180831 -99663025 - B3 SINE B2 0 216 4 3 754 283 198 209 0 chr11 22181144 22181235 -99662621 - PB1D7 SINE Alu -6 114 5 3 754 640 86 0 19 chr11 22181262 22181369 -99662487 + (TTC)n Simple_repeat Simple_repeat 3 107 0 3 754 1176 45 6 28 chr11 22181387 22181568 -99662288 + (TTC)n Simple_repeat Simple_repeat 1 177 0 3 754 412 246 108 50 chr11 22181568 22181688 -99662168 - ID_B1 SINE B4 -12 212 86 3 754 5608 184 96 27 chr11 22181750 22182705 -99661151 + Lx7 LINE L1 6309 7328 -368 3 754 378 57 0 0 chr11 22182705 22182758 -99661098 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 754 5608 184 96 27 chr11 22182758 22183101 -99660755 + Lx7 LINE L1 7329 7695 -1 3 754 287 263 101 0 chr11 22183122 22183221 -99660635 + PB1D7 SINE Alu 4 112 -8 3 754 268 215 138 0 chr11 22183749 22183814 -99660042 - B1F SINE Alu -58 91 18 3 754 219 327 108 10 chr11 22183814 22183843 -99660013 - ID_B1 SINE B4 -42 161 71 3 754 754 220 40 7 chr11 22183996 22184147 -99659709 + B4A SINE B4 24 179 -113 3 754 199 272 196 0 chr11 22184280 22184372 -99659484 - MIR SINE MIR -7 255 146 3 754 183 184 26 0 chr11 22184479 22184517 -99659339 + L2b LINE L2 3243 3281 -94 3 754 216 0 0 0 chr11 22184625 22184649 -99659207 + (A)n Simple_repeat Simple_repeat 1 24 0 3 754 241 319 0 14 chr11 22188163 22188236 -99655620 + G-rich Low_complexity Low_complexity 5 76 0 3 754 245 98 24 0 chr11 22188994 22189035 -99654821 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 3 754 735 179 37 0 chr11 22189114 22189248 -99654608 - B1_Mur2 SINE Alu -8 141 3 3 754 271 306 135 27 chr11 22189637 22189785 -99654071 + MIRb SINE MIR 104 267 -1 3 754 507 260 79 15 chr11 22191092 22191295 -99652561 + Charlie5 DNA MER1_type 2356 2571 -53 3 754 494 345 15 5 chr11 22191392 22191596 -99652260 + MER3 DNA MER1_type 4 209 0 3 754 1998 119 58 61 chr11 22191866 22192196 -99651660 + ORR1A4 LTR MaLR 1 329 0 3 754 360 0 0 0 chr11 22192297 22192337 -99651519 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 754 1275 88 38 5 chr11 22192377 22192561 -99651295 - B2_Mm2 SINE B2 -5 190 1 3 754 355 308 29 0 chr11 22192633 22192737 -99651119 + PB1D9 SINE Alu 1 107 -13 3 754 375 237 21 25 chr11 22192862 22192962 -99650894 - PB1D10 SINE Alu -25 124 26 3 754 808 255 65 0 chr11 22193148 22193332 -99650524 + B3 SINE B2 1 196 -20 3 754 2122 150 17 20 chr11 22193342 22193696 -99650160 - ORR1B2 LTR MaLR -14 353 1 3 754 291 264 249 57 chr11 22194635 22194828 -99649028 - Charlie25 DNA MER1_type -558 1966 1737 3 754 460 258 60 50 chr11 22194901 22195128 -99648728 - B4A SINE B4 0 292 2 3 754 290 270 420 30 chr11 22195250 22195369 -99648487 + B3A SINE B2 2 166 -50 3 754 219 36 0 0 chr11 22195369 22195397 -99648459 + (CAGG)n Simple_repeat Simple_repeat 4 31 0 3 754 263 308 0 60 chr11 22195397 22195414 -99648442 + B3 SINE B2 167 183 -33 3 754 233 283 144 39 chr11 22195435 22195615 -99648241 - Charlie25 DNA MER1_type -925 1599 1401 3 754 230 264 0 0 chr11 22195676 22195729 -99648127 - Charlie25 DNA MER1_type -1231 1293 1241 3 754 5327 34 22 1 chr11 22196037 22196686 -99647170 - L1Md_F2 LINE L1 -10 6572 5911 3 754 542 94 153 0 chr11 22196689 22196774 -99647082 - ORR1B2 LTR MaLR -8 359 262 3 754 1572 204 68 40 chr11 22196790 22197614 -99646242 + RMER3D-int LTR ERVK 10 1380 -1462 3 754 5701 194 20 65 chr11 22197723 22199246 -99644610 + RMER3D-int LTR ERVK 1377 2830 -12 3 754 365 288 106 17 chr11 22199286 22199466 -99644390 - Charlie25 DNA MER1_type -2160 364 169 3 754 480 314 21 69 chr11 22199472 22199579 -99644277 + ID_B1 SINE B4 82 187 -37 3 754 1287 169 171 43 chr11 22199579 22199907 -99643949 - ORR1D1 LTR MaLR -4 370 1 3 754 480 314 21 69 chr11 22199907 22199943 -99643913 + ID_B1 SINE B4 188 218 -6 3 754 2088 201 122 31 chr11 22201115 22201727 -99642129 - RMER19B LTR ERVK 0 902 1 3 754 296 273 13 25 chr11 22201799 22201878 -99641978 - ID4_ SINE ID -4 79 2 3 754 492 260 345 0 chr11 22202193 22202338 -99641518 + B3 SINE B2 8 202 -14 3 754 327 146 0 0 chr11 22202341 22202396 -99641460 + (TATG)n Simple_repeat Simple_repeat 2 56 0 3 754 309 341 36 57 chr11 22202567 22202707 -99641149 + B1_Mus1 SINE Alu 7 143 -5 3 754 3556 48 34 19 chr11 22202718 22203185 -99640671 + L1_Mus1 LINE L1 6092 6565 -2 3 754 195 42 0 0 chr11 22203190 22203214 -99640642 + (A)n Simple_repeat Simple_repeat 1 24 0 3 754 290 278 18 18 chr11 22203473 22203638 -99640218 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 3 754 256 132 53 30 chr11 22203656 22203789 -99640067 + (TA)n Simple_repeat Simple_repeat 1 136 0 3 754 278 91 43 54 chr11 22203825 22203918 -99639938 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 3 754 289 179 72 16 chr11 22203918 22204043 -99639813 + (TA)n Simple_repeat Simple_repeat 2 133 0 3 754 402 224 60 12 chr11 22204054 22204221 -99639635 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 3 754 410 158 58 35 chr11 22204147 22204318 -99639538 + (TA)n Simple_repeat Simple_repeat 2 176 0 3 754 283 238 17 47 chr11 22204253 22204425 -99639431 + (TTATA)n Simple_repeat Simple_repeat 1 167 0 3 754 433 288 88 0 chr11 22204523 22204648 -99639208 + B1F SINE Alu 14 149 0 3 754 1235 176 0 14 chr11 22205066 22205274 -99638582 - URR1B DNA MER1_type -20 205 1 3 754 1194 200 19 0 chr11 22205274 22205470 -99638386 + B3 SINE B2 16 215 -1 3 754 736 109 9 0 chr11 22205474 22205584 -99638272 - B1_Mus1 SINE Alu -2 146 36 3 754 270 245 123 75 chr11 22205507 22205613 -99638243 - MT2B LTR ERVL -337 264 154 3 754 476 36 0 0 chr11 22205621 22205677 -99638179 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 3 754 755 127 8 0 chr11 22205681 22205744 -99638112 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 754 3272 43 2 5 chr11 22205744 22206141 -99637715 + MTA_Mm LTR MaLR 1 396 0 3 754 755 127 8 0 chr11 22206141 22206211 -99637645 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 754 247 78 39 0 chr11 22206367 22206418 -99637438 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 3 754 302 218 171 11 chr11 22206521 22206609 -99637247 + RSINE1 SINE B4 11 112 -53 3 754 422 36 0 18 chr11 22206650 22206707 -99637149 + (TAA)n Simple_repeat Simple_repeat 2 57 0 3 754 3836 70 16 8 chr11 22207061 22207598 -99636258 - L1Md_F2 LINE L1 0 6582 6061 3 754 217 72 23 23 chr11 22207598 22207620 -99636236 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 3 754 24 67 0 0 chr11 22208044 22208089 -99635767 + AT_rich Low_complexity Low_complexity 1 45 0 3 754 996 33 33 0 chr11 22208541 22208691 -99635165 - MusHAL1 LINE L1 -632 2080 1926 3 754 6538 55 1 1 chr11 22208704 22209518 -99634338 - L1_Mus1 LINE L1 0 6567 5754 3 754 18958 124 50 2 chr11 22209518 22213543 -99630313 - L1VL2 LINE L1 -1054 4829 605 3 754 3301 43 2 2 chr11 22213632 22214028 -99629828 - MTA_Mm LTR MaLR 0 396 1 3 754 688 206 184 29 chr11 22214107 22214352 -99629504 - Lx9 LINE L1 -8 7636 7354 3 754 1270 108 22 0 chr11 22214939 22215124 -99628732 + B2_Mm2 SINE B2 2 190 -5 3 754 616 167 0 0 chr11 22215134 22215230 -99628626 + B3 SINE B2 2 97 -119 3 754 682 202 189 25 chr11 22215316 22215559 -99628297 + Lx9 LINE L1 7354 7636 -8 3 754 733 210 33 28 chr11 22215941 22216122 -99627734 - B3A SINE B2 -16 182 1 3 754 1193 153 70 0 chr11 22216278 22216493 -99627363 + RLTR24 LTR ERV1 6 235 -294 3 754 444 37 0 0 chr11 22216816 22216870 -99626986 + (CATAA)n Simple_repeat Simple_repeat 2 55 0 3 754 242 260 35 130 chr11 22216946 22217061 -99626795 + PB1D10 SINE Alu 9 112 -5 3 754 276 358 9 9 chr11 22217201 22217311 -99626545 + PB1D10 SINE Alu 1 110 -7 3 754 986 287 80 52 chr11 22218443 22218807 -99625049 - MTE2a LTR MaLR -5 374 1 3 754 548 235 28 70 chr11 22218962 22219104 -99624752 + B1_Mur1 SINE Alu 13 148 -1 3 754 477 122 0 0 chr11 22219694 22219768 -99624088 + (GGGA)n Simple_repeat Simple_repeat 2 75 0 3 754 739 172 66 0 chr11 22219901 22220023 -99623833 - B1_Mur4 SINE Alu -10 140 11 3 754 1361 201 33 82 chr11 22220019 22220387 -99623469 - ORR1C2 LTR MaLR -34 350 1 3 754 590 206 126 33 chr11 22220443 22220594 -99623262 - B3 SINE B2 -51 165 1 3 754 5602 95 12 0 chr11 22221099 22221961 -99621895 + MusHAL1 LINE L1 886 1757 -955 3 754 8628 2 0 0 chr11 22221966 22223113 -99620743 - L1Md_A LINE L1 0 6582 5436 3 754 14140 139 16 50 chr11 22223111 22223597 -99620259 + Lx LINE L1 2949 3424 -3230 4 754 574 27 0 13 chr11 22223597 22223673 -99620183 + B1_Mur4 SINE Alu 74 148 -2 4 754 14140 139 16 50 chr11 22223673 22226941 -99616915 + Lx LINE L1 3425 6629 -25 4 754 334 259 106 9 chr11 22227064 22227177 -99616679 + MIRb SINE MIR 145 268 0 4 754 1230 229 93 82 chr11 22228338 22228790 -99615066 + MLT1C LTR MaLR 11 467 0 4 754 2127 228 148 32 chr11 22228835 22229987 -99613869 + MMAR1 DNA Mariner 1 1286 0 4 754 687 214 13 40 chr11 22230003 22230154 -99613702 + B1_Mur3 SINE Alu 2 148 -1 4 754 243 0 0 0 chr11 22230563 22230590 -99613266 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4 754 273 200 18 0 chr11 22230593 22230648 -99613208 - PB1D10 SINE Alu -9 108 53 4 754 366 42 0 0 chr11 22231063 22231111 -99612745 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 754 290 271 72 10 chr11 22231134 22231231 -99612625 + MLT1C LTR MaLR 493 595 0 4 754 183 329 191 52 chr11 22231891 22232064 -99611792 - L3 LINE CR1 -41 4448 4252 4 754 216 339 32 56 chr11 22232566 22232691 -99611165 - MIRc SINE MIR -14 254 133 4 754 21 36 0 0 chr11 22233562 22233590 -99610266 + AT_rich Low_complexity Low_complexity 1 28 0 4 754 470 229 78 72 chr11 22233645 22233838 -99610018 + Lx7 LINE L1 7471 7664 -32 4 754 297 0 0 0 chr11 22233921 22233954 -99609902 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 754 210 111 89 0 chr11 22234144 22234189 -99609667 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 4 754 23 54 0 0 chr11 22234311 22234348 -99609508 + AT_rich Low_complexity Low_complexity 1 37 0 4 754 2881 30 5 52 chr11 22235227 22235612 -99608244 - IAPLTR1_Mm LTR ERVK 0 367 1 4 754 27590 20 1 1 chr11 22235612 22238883 -99604973 - IAPEz-int LTR ERVK 0 6481 3210 4 754 7786 72 74 47 chr11 22238882 22240154 -99603702 - IAPEz-int LTR ERVK -5168 1313 8 4 754 2881 30 5 52 chr11 22240154 22240539 -99603317 - IAPLTR1_Mm LTR ERVK 0 367 1 4 754 853 347 85 42 chr11 22241406 22242113 -99601743 - Charlie20a DNA Charlie -15 792 56 4 754 183 342 99 26 chr11 22242381 22242573 -99601283 + MIRc SINE MIR 38 243 -25 4 754 183 80 0 0 chr11 22242805 22242830 -99601026 + (T)n Simple_repeat Simple_repeat 1 25 0 4 754 925 128 0 0 chr11 22243494 22243627 -99600229 + ORR1A3 LTR MaLR 194 326 0 4 754 463 313 109 15 chr11 22244430 22244631 -99599225 + MER82 DNA MER2_type 321 540 -113 4 754 354 196 0 26 chr11 22244903 22245018 -99598838 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 754 320 291 46 20 chr11 22245891 22246042 -99597814 + Lx8 LINE L1 7071 7225 -248 4 754 300 324 121 7 chr11 22246071 22246211 -99597645 + MLT1C LTR MaLR 67 222 -143 4 754 446 262 22 60 chr11 22246203 22246337 -99597519 + MLT1C LTR MaLR 337 465 -2 4 754 534 269 94 45 chr11 22247153 22247329 -99596527 + B3 SINE B2 2 189 -27 4 754 315 71 0 0 chr11 22247329 22247371 -99596485 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 754 534 269 94 45 chr11 22247371 22247396 -99596460 + B3 SINE B2 190 213 -3 4 754 441 0 0 0 chr11 22248411 22248460 -99595396 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 754 321 317 120 11 chr11 22249399 22249590 -99594266 + MIR SINE MIR 37 248 -14 4 754 274 319 0 0 chr11 22249653 22249725 -99594131 - B4A SINE B4 -1 291 220 4 754 1082 206 68 125 chr11 22249733 22249897 -99593959 - Lx9 LINE L1 0 7644 7475 4 754 1703 128 249 42 chr11 22249897 22250279 -99593577 - RMER6B LTR ERVK 0 461 1 4 754 1082 206 68 125 chr11 22250279 22250602 -99593254 - Lx9 LINE L1 -170 7474 7185 4 754 1342 220 180 56 chr11 22250602 22251102 -99592754 + RMER2 LTR ERV1 1 562 -5 4 754 1122 195 52 18 chr11 22251104 22251376 -99592480 - Lx9 LINE L1 -456 7188 6908 4 754 831 87 23 38 chr11 22251376 22251508 -99592348 + RMER6B LTR ERVK 330 459 -2 4 754 1948 209 70 12 chr11 22251522 22251949 -99591907 - Lx9 LINE L1 -713 6931 6480 4 754 955 226 59 18 chr11 22251949 22252170 -99591686 - B4A SINE B4 -61 231 2 4 754 320 306 54 9 chr11 22253481 22253593 -99590263 - MER5A1 DNA MER1_type -49 117 1 4 754 219 320 27 0 chr11 22253624 22253699 -99590157 + MIR3 SINE MIR 117 193 -15 4 754 219 323 161 0 chr11 22254869 22254962 -99588894 + B1_Mm SINE Alu 1 108 -39 4 754 228 329 13 0 chr11 22255437 22255513 -99588343 - MLT1G1 LTR MaLR -502 77 1 4 754 464 347 59 43 chr11 22255543 22255638 -99588218 - RMER15 LTR ERVL -14 561 468 4 754 850 223 111 11 chr11 22255638 22255828 -99588028 - B3 SINE B2 -6 210 2 4 754 464 347 59 43 chr11 22255828 22255988 -99587868 - RMER15 LTR ERVL -108 467 303 4 754 577 226 33 114 chr11 22256082 22256292 -99587564 - RMER15-int LTR ERVL -28 4971 4779 4 754 425 236 97 65 chr11 22256305 22256459 -99587397 - RLTR11A2 LTR ERVK 0 527 369 4 754 28736 105 16 17 chr11 22256460 22262464 -99581392 + L1_Mus2 LINE L1 559 6566 0 4 754 1722 218 48 21 chr11 22262488 22262919 -99580937 - RLTR11A2 LTR ERVK -65 462 1 4 754 923 302 52 41 chr11 22262920 22263286 -99580570 - RMER15-int LTR ERVL -229 4770 4401 4 754 277 297 35 18 chr11 22263291 22263404 -99580452 - Lx8 LINE L1 -1170 6303 6189 4 754 1110 250 58 94 chr11 22263472 22263865 -99579991 + MTEb LTR MaLR 1 379 0 4 754 1536 269 97 74 chr11 22263865 22264406 -99579450 + MTEb-int LTR MaLR 1 554 -1026 4 754 1512 203 220 57 chr11 22264406 22264897 -99578959 + RMER4B LTR ERVK 1 571 -14 4 754 1770 299 100 14 chr11 22264940 22265681 -99578175 + MTEb-int LTR MaLR 601 1548 -32 4 754 998 222 19 15 chr11 22265685 22265891 -99577965 + B3 SINE B2 1 207 -9 4 754 1028 233 106 35 chr11 22265909 22266402 -99577454 - Lx8 LINE L1 -566 5281 4754 4 754 1689 251 83 30 chr11 22266402 22267030 -99576826 + Lx9 LINE L1 5295 5991 -1653 4 754 227 135 40 0 chr11 22267075 22267149 -99576707 - RMER17C LTR ERVK -151 259 183 4 754 303 93 0 0 chr11 22267311 22267354 -99576502 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 754 462 226 0 31 chr11 22267362 22267458 -99576398 + Lx9 LINE L1 6371 6463 -1181 4 754 299 309 125 16 chr11 22267459 22267587 -99576269 + B4 SINE B4 64 205 -87 4 754 604 182 40 24 chr11 22267492 22267616 -99576240 + B1F2 SINE Alu 23 148 -1 4 754 1594 198 20 78 chr11 22267709 22268109 -99575747 + MTEb LTR MaLR 3 379 0 4 754 198 0 0 0 chr11 22268198 22268220 -99575636 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 754 329 264 11 0 chr11 22268223 22268310 -99575546 - RMER15-int LTR ERVL -2863 2136 2049 4 754 1467 226 88 15 chr11 22268311 22268653 -99575203 + ORR1D1 LTR MaLR 1 367 -7 4 754 618 316 74 45 chr11 22268797 22269241 -99574615 - RMER15-int LTR ERVL -3043 1956 1500 4 754 968 314 72 3 chr11 22269261 22269609 -99574247 - RMER15-int LTR ERVL -3547 1452 1081 4 754 2095 295 65 4 chr11 22269630 22270369 -99573487 - RMER15-int LTR ERVL -3968 1031 248 4 754 248 291 229 17 chr11 22270595 22270770 -99573086 - RMER15 LTR ERVL -52 523 312 4 754 236 344 53 46 chr11 22270840 22270971 -99572885 - RMER15 LTR ERVL -436 139 8 4 754 857 169 18 6 chr11 22271318 22271485 -99572371 - URR1B DNA MER1_type -6 219 51 4 754 428 117 67 0 chr11 22271606 22271735 -99572121 - B3 SINE B2 0 216 5 4 754 268 43 43 0 chr11 22272183 22272229 -99571627 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 4 754 287 268 0 0 chr11 22272255 22272326 -99571530 - L1MA6 LINE L1 -24 6276 6206 4 754 550 106 53 8 chr11 22272329 22272462 -99571394 + (TA)n Simple_repeat Simple_repeat 2 140 0 4 754 23 78 0 0 chr11 22273621 22273672 -99570184 + AT_rich Low_complexity Low_complexity 1 51 0 4 754 835 147 44 0 chr11 22273968 22274104 -99569752 - B1_Mur3 SINE Alu -7 142 1 4 754 29 0 0 0 chr11 22274763 22274792 -99569064 + AT_rich Low_complexity Low_complexity 1 29 0 4 754 281 247 36 83 chr11 22275821 22275905 -99567951 - ID4_ SINE ID 0 83 4 4 754 321 298 105 0 chr11 22275994 22276031 -99567825 + ID SINE ID 36 84 -140 4 754 333 319 11 0 chr11 22276031 22276122 -99567734 + PB1D10 SINE Alu 3 94 -23 4 754 494 274 94 0 chr11 22276140 22276257 -99567599 - RSINE1 SINE B4 -37 128 1 4 754 29 60 0 0 chr11 22277428 22277478 -99566378 + AT_rich Low_complexity Low_complexity 1 50 0 4 754 207 0 0 0 chr11 22277673 22277696 -99566160 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 754 311 333 0 0 chr11 22278344 22278434 -99565422 + PB1D10 SINE Alu 26 115 -2 4 754 5736 80 54 15 chr11 22278571 22280207 -99563649 - L1VL2 LINE L1 -1789 1826 115 4 754 346 172 35 0 chr11 22280474 22280532 -99563324 - B3 SINE B2 -155 61 2 4 754 386 212 154 48 chr11 22280606 22280710 -99563146 - MTEb LTR MaLR -1 378 264 4 754 780 371 114 48 chr11 22280723 22281239 -99562617 + MLT1-int LTR MaLR 692 1241 -130 4 754 600 269 8 0 chr11 22281315 22281445 -99562411 + B1F SINE Alu 13 143 -6 4 754 1077 279 104 51 chr11 22281455 22282059 -99561797 + Lx8 LINE L1 6837 7472 -1 4 755 529 162 137 22 chr11 22282663 22282802 -99561054 + L1M3 LINE L1 4033 4187 -1953 4 755 543 273 5 27 chr11 22282825 22283013 -99560843 + L1M3 LINE L1 5601 5784 -384 4 755 348 174 0 0 chr11 22283339 22283431 -99560425 + GA-rich Low_complexity Low_complexity 2 93 0 4 755 35 0 0 0 chr11 22283513 22283548 -99560308 + AT_rich Low_complexity Low_complexity 1 35 0 4 755 666 130 0 0 chr11 22284355 22284463 -99559393 + (TC)n Simple_repeat Simple_repeat 2 109 0 4 755 264 269 109 79 chr11 22284465 22284566 -99559290 - PB1D10 SINE Alu -7 113 10 4 755 260 293 29 46 chr11 22285033 22285208 -99558648 + L1M2a LINE L1 1971 2142 -5026 4 755 637 285 46 0 chr11 22285618 22285769 -99558087 + RSINE1 SINE B4 8 165 0 4 755 469 231 14 0 chr11 22285772 22285919 -99557937 + (CA)n Simple_repeat Simple_repeat 2 150 0 4 755 297 319 143 16 chr11 22285919 22286177 -99557679 - RMER12 LTR ERVK -330 992 702 4 755 596 124 18 9 chr11 22286177 22286291 -99557565 - RMER1A Other Other -20 1010 896 4 755 5610 128 101 54 chr11 22286918 22287969 -99555887 - RLTR13D3 LTR ERVK 0 1114 15 4 755 204 40 0 0 chr11 22288221 22288246 -99555610 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 755 371 233 18 104 chr11 22288246 22288282 -99555574 + Lx8 LINE L1 5536 5574 -273 4 755 5358 36 3 0 chr11 22288282 22288921 -99554935 - L1Md_F2 LINE L1 -2 6580 5940 4 755 371 233 18 104 chr11 22288921 22288940 -99554916 + Lx8 LINE L1 5575 5593 -254 4 755 1449 136 195 0 chr11 22288940 22289212 -99554644 - ORR1A4 LTR MaLR 0 329 5 4 755 371 233 18 104 chr11 22289212 22289318 -99554538 + Lx8 LINE L1 5594 5684 -163 4 755 17301 119 67 3 chr11 22289360 22290967 -99552889 - Lx LINE L1 -2 6652 5032 4 755 570 54 0 0 chr11 22290967 22291041 -99552815 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 755 1106 90 0 0 chr11 22291041 22291186 -99552670 - B1_Mm SINE Alu -2 145 1 4 755 17301 156 168 6 chr11 22291186 22294210 -99549646 - Lx LINE L1 -852 5031 1384 4 755 403 158 110 0 chr11 22294203 22294285 -99549571 - L1VL2 LINE L1 -6153 182 92 4 755 1086 300 132 33 chr11 22294286 22294718 -99549138 + Lx8 LINE L1 5702 6187 -1286 4 755 331 56 37 0 chr11 22294718 22294772 -99549084 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 4 755 1086 300 132 33 chr11 22294772 22295076 -99548780 + Lx8 LINE L1 6188 6511 -962 4 755 186 171 0 0 chr11 22295086 22295127 -99548729 + CT-rich Low_complexity Low_complexity 2 42 0 4 755 2368 41 17 0 chr11 22295130 22295424 -99548432 - L1Md_F2 LINE L1 0 6582 6284 4 755 4422 16 0 0 chr11 22295424 22295917 -99547939 - MT2_Mm LTR ERVL 0 493 1 4 755 302 0 0 0 chr11 22295917 22295955 -99547901 - MERVL-int LTR ERVL 0 5485 5448 4 755 390 167 46 35 chr11 22295955 22296042 -99547814 - ORR1A3-int LTR MaLR -1323 640 553 5 755 38721 16 14 0 chr11 22296042 22301329 -99542527 - MERVL-int LTR ERVL -125 5360 1 4 755 4435 14 0 0 chr11 22301329 22301822 -99542034 - MT2_Mm LTR ERVL 0 493 1 4 755 1907 39 0 0 chr11 22301822 22302055 -99541801 - L1Md_F2 LINE L1 -294 6288 6056 5 755 364 304 103 57 chr11 22302065 22302347 -99541509 - RLTR15 LTR ERVK -20 339 45 5 755 1994 301 95 8 chr11 22302430 22302846 -99541010 + Lx8 LINE L1 6505 6939 -534 4 755 180 0 0 0 chr11 22302846 22302866 -99540990 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 755 216 0 0 0 chr11 22302866 22302889 -99540967 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 755 1994 301 95 8 chr11 22302889 22303356 -99540500 + Lx8 LINE L1 6940 7464 -9 4 755 843 283 7 4 chr11 22303374 22303651 -99540205 + L1M2 LINE L1 3739 4016 -2127 5 755 258 292 40 50 chr11 22303651 22303752 -99540104 - LTR32 LTR ERVL -269 202 103 5 755 281 187 73 52 chr11 22303754 22303850 -99540006 + L1_Rod LINE L1 4089 4186 -1661 5 755 6073 78 65 52 chr11 22303872 22305617 -99538239 + L1VL2 LINE L1 12 1791 -1824 5 755 2600 93 114 0 chr11 22305617 22305995 -99537861 + BGLII LTR ERVK 1 421 0 5 755 6073 75 12 86 chr11 22305995 22306152 -99537704 + L1VL2 LINE L1 1792 1942 -1673 5 755 1686 266 28 59 chr11 22306246 22307104 -99536752 - L1_Rod LINE L1 -1222 4625 3795 5 755 759 108 28 14 chr11 22307123 22307264 -99536592 + GA-rich Low_complexity Low_complexity 1 143 0 5 755 206 333 29 14 chr11 22307717 22307787 -99536069 - MIRm SINE MIR -15 261 191 5 755 274 338 62 68 chr11 22308165 22308311 -99535545 + MLT1M LTR MaLR 129 273 -399 5 755 478 264 79 26 chr11 22308846 22308998 -99534858 + RSINE1 SINE B4 4 163 -2 5 755 1745 166 78 28 chr11 22309027 22309387 -99534469 + ORR1C1 LTR MaLR 1 378 0 5 755 307 356 0 10 chr11 22309530 22309632 -99534224 + PB1D10 SINE Alu 8 108 -9 5 755 3641 257 33 9 chr11 22309947 22310881 -99532975 - RCHARR1 DNA MER1_type -14 960 4 5 755 25 0 0 0 chr11 22311071 22311096 -99532760 + AT_rich Low_complexity Low_complexity 1 25 0 5 755 1646 156 105 61 chr11 22311748 22312110 -99531746 - ORR1C1 LTR MaLR 0 378 1 5 755 3811 161 36 11 chr11 22312110 22312770 -99531086 - ORR1C1-int LTR MaLR 0 1509 833 5 755 1130 101 0 0 chr11 22312905 22313053 -99530803 - B1_Mus1 SINE Alu 0 148 1 5 755 459 0 0 0 chr11 22314219 22314270 -99529586 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 755 382 111 0 0 chr11 22314378 22314441 -99529415 - L1Md_F LINE L1 -6074 445 383 5 755 1307 129 29 25 chr11 22314441 22314679 -99529177 - L1VL1 LINE L1 -6156 266 28 5 755 11675 55 6 7 chr11 22314692 22316281 -99527575 + L1_Mm LINE L1 3481 5068 -815 5 755 379 141 47 0 chr11 22316626 22316690 -99527166 - B3 SINE B2 -148 68 2 5 755 354 377 6 59 chr11 22316734 22316903 -99526953 + RSINE1 SINE B4 6 165 0 5 755 264 370 43 11 chr11 22317133 22317226 -99526630 + B4A SINE B4 78 173 -119 5 755 535 276 41 0 chr11 22317147 22317270 -99526586 + B1_Mur2 SINE Alu 7 134 -15 5 755 3128 63 39 2 chr11 22317312 22317725 -99526131 + RLTR10C LTR ERVK 1 428 -8 5 755 1175 201 5 5 chr11 22317775 22317990 -99525866 + B3 SINE B2 1 215 -1 5 755 1223 89 92 9 chr11 22318099 22318304 -99525552 - ORR1A2 LTR MaLR 0 394 173 5 755 359 290 26 53 chr11 22318291 22318404 -99525452 - B4A SINE B4 -182 110 1 5 755 308 355 176 36 chr11 22319000 22319193 -99524663 + LTR16C LTR ERVL 148 367 -122 5 755 956 250 24 0 chr11 22319681 22319889 -99523967 + B3 SINE B2 4 216 0 5 755 761 299 91 0 chr11 22320868 22321122 -99522734 - MER2 DNA MER2_type -62 283 7 5 755 334 278 21 43 chr11 22322583 22322677 -99521179 + B1F2 SINE Alu 2 93 -56 5 755 401 178 7 56 chr11 22322681 22322824 -99521032 + GA-rich Low_complexity Low_complexity 1 136 0 5 755 219 69 0 0 chr11 22323728 22323757 -99520099 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 755 1217 90 0 6 chr11 22324002 22324180 -99519676 + (GGAGA)n Simple_repeat Simple_repeat 4 180 0 5 755 202 184 0 0 chr11 22324180 22324209 -99519647 + A-rich Low_complexity Low_complexity 12 40 0 5 755 416 321 47 0 chr11 22325069 22325175 -99518681 + PB1D10 SINE Alu 1 111 -6 5 755 641 295 51 68 chr11 22325184 22325243 -99518613 + B4 SINE B4 3 61 -231 5 755 1234 100 5 40 chr11 22325243 22325441 -99518415 + B2_Mm2 SINE B2 2 192 -3 5 755 641 295 51 68 chr11 22325441 22325608 -99518248 + B4 SINE B4 62 213 -79 5 755 189 0 0 0 chr11 22325608 22325629 -99518227 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 755 641 295 51 68 chr11 22325629 22325696 -99518160 + B4 SINE B4 214 291 -1 5 755 208 137 39 0 chr11 22325706 22325757 -99518099 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 755 223 304 0 28 chr11 22325829 22325900 -99517956 + (CATA)n Simple_repeat Simple_repeat 4 72 0 5 755 588 227 0 78 chr11 22325909 22326038 -99517818 + B1_Mur3 SINE Alu 25 143 -6 5 755 432 0 0 0 chr11 22326042 22326090 -99517766 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 5 755 1255 115 16 0 chr11 22326179 22326361 -99517495 + B2_Mm2 SINE B2 2 186 -9 5 755 1188 55 7 0 chr11 22326579 22326725 -99517131 - B1_Mus1 SINE Alu -1 147 1 5 755 23 78 0 0 chr11 22326802 22326853 -99517003 + AT_rich Low_complexity Low_complexity 1 51 0 5 755 21 0 0 0 chr11 22326865 22326886 -99516970 + AT_rich Low_complexity Low_complexity 1 21 0 5 755 571 279 111 25 chr11 22326916 22327078 -99516778 - B3A SINE B2 -22 176 1 5 755 229 109 43 0 chr11 22327140 22327186 -99516670 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 755 35462 54 3 1 chr11 22327288 22333270 -99510586 - L1Md_F3 LINE L1 -14 6570 619 5 755 265 242 0 31 chr11 22333694 22333758 -99510098 - HAL1 LINE L1 -677 1830 1769 5 755 350 252 115 0 chr11 22333773 22333907 -99509949 - MER45A DNA Tip100 -7 171 23 5 755 1548 195 107 98 chr11 22334129 22334567 -99509289 + RMER10A LTR ERVL 1 442 0 5 755 1215 181 26 37 chr11 22335355 22335643 -99508213 + ORR1B1 LTR MaLR 1 266 -80 5 755 1150 277 58 58 chr11 22336337 22336697 -99507159 - MTE2a LTR MaLR -19 360 1 5 755 322 21 43 0 chr11 22337055 22337102 -99506754 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 755 582 306 11 23 chr11 22337192 22337369 -99506487 - B4A SINE B4 -33 259 85 5 755 253 281 205 8 chr11 22338472 22338615 -99505241 - MIRc SINE MIR -94 174 3 5 755 309 350 28 28 chr11 22339258 22339402 -99504454 - L4 LINE RTE -147 1882 1739 5 755 3677 23 2 0 chr11 22339590 22339985 -99503871 - MTA_Mm LTR MaLR 0 396 1 5 755 1841 253 199 63 chr11 22340254 22341037 -99502819 + RMER19B LTR ERVK 1 890 -12 5 755 905 229 71 109 chr11 22341549 22341985 -99501871 - RLTR11B LTR ERVK -9 432 1 5 755 198 0 0 0 chr11 22342093 22342115 -99501741 + (CCA)n Simple_repeat Simple_repeat 1 22 0 5 755 1365 191 148 18 chr11 22342209 22342540 -99501316 + ORR1D1 LTR MaLR 1 374 0 5 755 243 243 111 28 chr11 22344093 22344165 -99499691 + B4 SINE B4 6 83 -209 5 755 335 231 103 0 chr11 22344102 22344180 -99499676 + B3A SINE B2 21 106 -89 5 755 2570 168 74 15 chr11 22344237 22344763 -99499093 + Lx9 LINE L1 7088 7644 0 5 755 545 270 96 18 chr11 22344911 22345077 -99498779 - B3A SINE B2 -3 195 17 5 755 423 299 76 49 chr11 22345461 22345749 -99498107 + L1MB7 LINE L1 5874 6169 -15 5 755 420 336 50 21 chr11 22345759 22345899 -99497957 + RSINE1 SINE B4 9 152 -13 5 755 333 0 0 0 chr11 22345908 22345945 -99497911 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 755 625 149 140 0 chr11 22346026 22346140 -99497716 + B1F1 SINE Alu 18 147 -2 5 755 1032 235 39 0 chr11 22346513 22346717 -99497139 + B3 SINE B2 1 212 -4 5 755 1811 130 279 44 chr11 22347430 22347856 -99496000 + RLTR11A2 LTR ERVK 2 527 0 5 755 202 61 0 57 chr11 22348789 22348824 -99495032 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 5 755 567 318 53 7 chr11 22349083 22349235 -99494621 + B3A SINE B2 15 173 -25 5 755 500 42 14 0 chr11 22349236 22349307 -99494549 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 755 183 80 0 0 chr11 22349308 22349333 -99494523 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 755 21 71 0 0 chr11 22349377 22349419 -99494437 + AT_rich Low_complexity Low_complexity 1 42 0 5 755 540 182 0 0 chr11 22350046 22350178 -99493678 + (TG)n Simple_repeat Simple_repeat 2 133 0 5 755 2443 208 62 108 chr11 22350265 22350905 -99492951 + RMER19C LTR ERVK 1 611 0 5 755 186 43 0 0 chr11 22351335 22351358 -99492498 + (TGG)n Simple_repeat Simple_repeat 1 23 0 5 755 767 260 12 23 chr11 22351372 22351545 -99492311 - B4A SINE B4 -74 218 48 5 755 476 74 25 0 chr11 22352109 22352190 -99491666 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 5 755 188 243 167 75 chr11 22353268 22353388 -99490468 - MIRb SINE MIR -125 143 13 5 755 2192 147 91 0 chr11 22354209 22354570 -99489286 - ORR1B1 LTR MaLR 0 394 1 5 755 284 306 9 0 chr11 22354710 22354821 -99489035 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 5 755 409 252 147 29 chr11 22354922 22355024 -99488832 - PB1D10 SINE Alu -2 115 2 5 755 1243 48 0 0 chr11 22355792 22355926 -99487930 + B1_Mm SINE Alu 1 134 -13 5 755 275 0 29 0 chr11 22355926 22355961 -99487895 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 755 402 147 0 0 chr11 22355980 22356048 -99487808 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 755 25 51 0 0 chr11 22356089 22356128 -99487728 + AT_rich Low_complexity Low_complexity 1 39 0 5 755 232 274 0 40 chr11 22356468 22356544 -99487312 - ID4_ SINE ID -7 76 4 5 755 1439 195 61 112 chr11 22357752 22357773 -99486083 - ORR1D1 LTR MaLR 0 374 356 5 755 3741 63 45 2 chr11 22357773 22358235 -99485621 + RLTR45 LTR ERVK 1 482 0 6 755 1439 195 61 112 chr11 22358235 22358605 -99485251 - ORR1D1 LTR MaLR -19 355 3 5 755 559 301 24 0 chr11 22358713 22358836 -99485020 + RSINE1 SINE B4 34 159 -6 6 755 429 20 0 0 chr11 22359976 22360026 -99483830 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 755 4338 115 98 153 chr11 22360882 22361865 -99481991 + RLTR13B3 LTR ERVK 1 929 0 6 755 1333 210 78 6 chr11 22361986 22362317 -99481539 - ORR1E LTR MaLR 0 359 5 6 755 1260 131 11 0 chr11 22362705 22362881 -99480975 + B2_Mm2 SINE B2 1 178 -17 6 755 354 359 8 8 chr11 22363140 22363258 -99480598 - MER2B DNA MER2_type -3 333 216 6 755 1882 139 49 64 chr11 22363264 22363671 -99480185 + RMER4B LTR ERVK 17 417 -168 6 755 4411 162 88 22 chr11 22363662 22364492 -99479364 + RMER19B LTR ERVK 40 896 -6 6 755 28631 117 76 2 chr11 22364497 22366302 -99477554 + L1_Mus1 LINE L1 386 2240 -3643 6 755 3916 20 121 0 chr11 22366302 22366742 -99477114 + MT2_Mm LTR ERVL 1 493 0 6 755 28631 100 85 2 chr11 22366742 22369113 -99474743 + L1_Mus1 LINE L1 2241 4964 -919 6 755 234 0 0 0 chr11 22369113 22369139 -99474717 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 6 755 28631 79 33 1 chr11 22369139 22370736 -99473120 + L1_Mus1 LINE L1 4965 6567 0 6 755 329 242 166 43 chr11 22370754 22371041 -99472815 + RLTR15 LTR ERVK 47 267 -92 6 755 407 283 181 9 chr11 22371189 22371421 -99472435 - L1MEg LINE L1 -2998 3148 2877 6 755 286 200 0 0 chr11 22371519 22371574 -99472282 + MYSERV6-int LTR ERVK 8344 8398 -561 6 755 2773 167 56 11 chr11 22371812 22372345 -99471511 - RLTR20B2 LTR ERVK 0 560 4 6 755 9794 156 108 57 chr11 22372345 22373801 -99470055 - MYSERV16_I-int LTR ERVK 0 2326 725 6 755 1229 76 0 0 chr11 22373801 22373946 -99469910 + B1_Mus2 SINE Alu 3 147 0 6 755 9794 156 108 57 chr11 22373946 22374014 -99469842 - MYSERV16_I-int LTR ERVK -1602 724 724 6 755 1128 128 0 0 chr11 22374014 22374193 -99469663 + (GAA)n Simple_repeat Simple_repeat 1 179 0 6 755 9794 156 108 57 chr11 22374193 22374878 -99468978 - MYSERV16_I-int LTR ERVK -1602 724 1 6 755 364 204 0 64 chr11 22374965 22375075 -99468781 - RMER3D-int LTR ERVK -1629 1213 1111 6 755 270 0 0 0 chr11 22375224 22375254 -99468602 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 755 227 219 11 58 chr11 22375462 22375549 -99468307 + T-rich Low_complexity Low_complexity 2 84 0 6 755 300 53 0 0 chr11 22375567 22375605 -99468251 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 755 1195 75 0 0 chr11 22375605 22375744 -99468112 - B1_Mus1 SINE Alu -8 140 2 6 755 339 295 22 33 chr11 22375774 22375865 -99467991 - B3 SINE B2 -14 202 113 6 755 300 237 110 30 chr11 22376007 22376107 -99467749 - L1MEg LINE L1 -5130 1112 1005 6 755 1046 199 39 15 chr11 22376121 22376325 -99467531 - B3 SINE B2 -4 212 4 6 755 3211 172 59 33 chr11 22376358 22376970 -99466886 - RLTR5_Mm LTR ERV1 0 628 1 6 755 300 292 41 55 chr11 22377038 22377183 -99466673 + ORR1E LTR MaLR 217 359 0 6 755 515 96 48 0 chr11 22377301 22377384 -99466472 + B1_Mus2 SINE Alu 61 147 0 6 755 318 148 0 0 chr11 22377384 22377438 -99466418 + (A)n Simple_repeat Simple_repeat 1 54 0 6 755 524 293 104 51 chr11 22377501 22377635 -99466221 + L1M5 LINE L1 3709 3851 -2295 6 755 1376 87 46 0 chr11 22377635 22377808 -99466048 + B2_Mm2 SINE B2 1 181 -14 6 755 524 293 104 51 chr11 22377808 22378087 -99465769 + L1M5 LINE L1 3852 4144 -2002 6 755 310 217 0 0 chr11 22378682 22378742 -99465114 + FordPrefect DNA Tip100 1456 1515 -168 6 755 340 288 195 6 chr11 22378743 22378907 -99464949 + MER2 DNA MER2_type 9 203 -142 6 755 423 0 0 0 chr11 22379797 22379844 -99464012 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 6 755 2009 177 33 63 chr11 22380009 22380497 -99463359 + RLTR20B3 LTR ERVK 98 570 -7 6 755 185 299 14 43 chr11 22381296 22381366 -99462490 + L3 LINE CR1 3013 3080 -1409 6 755 266 295 92 59 chr11 22382014 22382133 -99461723 + LTR48B LTR ERV1 1 123 -521 6 755 883 183 149 0 chr11 22382145 22382270 -99461586 + RLTR42 LTR ERVK 1 151 -88 6 755 198 0 0 0 chr11 22382270 22382292 -99461564 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 6 755 883 183 149 0 chr11 22382292 22382374 -99461482 + RLTR42 LTR ERVK 152 238 -1 6 755 2585 139 36 101 chr11 22382705 22383102 -99460754 + RMER16 LTR ERVK 70 469 -64 6 755 3558 68 2 9 chr11 22383102 22383550 -99460306 - L1Md_F2 LINE L1 -1 6581 6137 6 755 2585 139 36 101 chr11 22383550 22383648 -99460208 + RMER16 LTR ERVK 470 533 0 6 755 714 249 46 26 chr11 22383648 22383842 -99460014 + SRV_MM-int LTR ERVK 1 198 -5208 6 755 366 213 0 0 chr11 22383972 22384033 -99459823 + SRV_MM-int LTR ERVK 196 256 -5150 6 755 7555 33 0 9 chr11 22384446 22385131 -99458725 + L1Md_T LINE L1 5739 6422 -160 6 755 3427 23 2 47 chr11 22385131 22385539 -99458317 - RLTR10 LTR ERVK 0 390 1 6 755 7555 33 0 9 chr11 22385539 22385705 -99458151 + L1Md_T LINE L1 6423 6582 0 6 755 317 319 100 0 chr11 22386232 22386392 -99457464 + MMERVK10C-int LTR ERVK 1548 1723 -5858 6 755 1293 54 0 0 chr11 22386399 22386546 -99457310 + B1_Mus1 SINE Alu 1 147 -1 6 755 270 0 0 0 chr11 22386582 22386612 -99457244 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 755 1333 315 66 57 chr11 22386644 22387600 -99456256 + SRV_MM-int LTR ERVK 1431 2395 -3772 6 755 13511 121 48 41 chr11 22387650 22388658 -99455198 + RMER16-int LTR ERVK 1659 2705 -2701 6 755 187 265 42 56 chr11 22388658 22388730 -99455126 + L3 LINE CR1 3583 3653 -836 6 755 13511 121 48 41 chr11 22388730 22389949 -99453907 + RMER16-int LTR ERVK 2706 3973 -1433 6 755 4162 98 0 30 chr11 22390417 22390668 -99453188 + RMER16-int LTR ERVK 4205 4455 -951 6 755 2967 52 9 0 chr11 22390668 22391011 -99452845 - ORR1A1 LTR MaLR 0 346 1 6 755 4162 98 0 30 chr11 22391011 22391366 -99452490 + RMER16-int LTR ERVK 4456 4793 -613 6 755 532 160 0 0 chr11 22391369 22391444 -99452412 + tRNA-Lys-AAG tRNA tRNA 2 76 0 6 755 2559 140 65 31 chr11 22391446 22391895 -99451961 - RMER16 LTR ERVK 0 533 70 6 755 775 309 47 79 chr11 22392210 22392409 -99451447 + MTEa LTR MaLR 4 183 -196 6 755 1467 186 136 30 chr11 22392409 22392582 -99451274 + ORR1D1 LTR MaLR 1 181 -193 6 755 435 19 0 0 chr11 22392582 22392634 -99451222 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 755 1467 186 136 30 chr11 22392634 22392798 -99451058 + ORR1D1 LTR MaLR 182 374 0 6 755 775 309 47 79 chr11 22392798 22392939 -99450917 + MTEa LTR MaLR 184 333 -46 6 755 276 359 37 37 chr11 22393085 22393247 -99450609 - MER2 DNA MER2_type -1 344 183 6 755 520 82 0 0 chr11 22393646 22393719 -99450137 - MTB LTR MaLR 0 400 328 6 755 253 324 0 73 chr11 22394687 22394797 -99449059 + MIR SINE MIR 19 120 -142 6 755 217 327 0 0 chr11 22394928 22394983 -99448873 - L3 LINE CR1 -98 4391 4337 6 755 1964 256 186 11 chr11 22395242 22395881 -99447975 + RMER13A LTR ERVK 14 764 -96 6 755 465 19 0 0 chr11 22396218 22396272 -99447584 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 755 180 179 0 0 chr11 22396423 22396462 -99447394 + T-rich Low_complexity Low_complexity 1 39 0 6 755 4550 68 2 5 chr11 22396469 22397028 -99446828 - L1_Mus1 LINE L1 -1 6566 6010 6 755 4043 72 0 0 chr11 22397030 22397682 -99446174 + L1_Mus1 LINE L1 5374 6025 -541 6 755 1468 135 5 0 chr11 22398186 22398408 -99445448 - Lx LINE L1 -5 6649 6427 6 755 735 52 0 40 chr11 22398408 22398509 -99445347 - Lx2 LINE L1 -354 6643 6547 6 755 257 370 91 23 chr11 22399079 22399342 -99444514 - L3 LINE CR1 -874 3615 3335 6 755 368 282 105 90 chr11 22399701 22399937 -99443919 + L1ME3A LINE L1 1086 1318 -4924 6 755 219 88 0 0 chr11 22399937 22399971 -99443885 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 755 767 219 148 122 chr11 22399978 22400248 -99443608 + B4 SINE B4 2 278 -14 6 755 368 282 105 90 chr11 22400248 22400471 -99443385 + L1ME3A LINE L1 1319 1560 -4682 6 755 1906 130 191 50 chr11 22400768 22401172 -99442684 + RMER6B LTR ERVK 1 461 0 6 755 221 0 35 0 chr11 22401198 22401227 -99442629 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 755 198 0 0 0 chr11 22401227 22401248 -99442608 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 755 1225 52 7 0 chr11 22401508 22401663 -99442193 + B2_Mm2 SINE B2 2 157 -38 6 755 189 0 0 0 chr11 22401663 22401684 -99442172 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 755 459 311 65 9 chr11 22401895 22402109 -99441747 + L1ME3A LINE L1 2597 2822 -3324 6 755 285 275 81 144 chr11 22402174 22402348 -99441508 + RSINE1 SINE B4 3 165 0 6 755 498 318 172 18 chr11 22402606 22402987 -99440869 + L1ME3A LINE L1 3332 3770 -2376 6 755 575 232 159 51 chr11 22402991 22403186 -99440670 - B3 SINE B2 0 216 1 6 755 305 325 128 38 chr11 22403260 22403525 -99440331 + L1ME3A LINE L1 5766 6054 -119 6 755 999 92 7 0 chr11 22403535 22403677 -99440179 + URR1A DNA MER1_type 70 212 -14 6 755 1161 264 62 31 chr11 22403732 22404087 -99439769 - ORR1D2 LTR MaLR -2 368 3 6 755 920 221 46 0 chr11 22404248 22404443 -99439413 + ID_B1 SINE B4 12 215 -9 6 755 721 134 8 2 chr11 22404951 22405072 -99438784 + RMER19B LTR ERVK 2 128 -609 6 755 2105 144 93 0 chr11 22405097 22405431 -99438425 + RMER19B LTR ERVK 531 895 -7 6 755 274 340 81 12 chr11 22405572 22405733 -99438123 - ORR1E LTR MaLR 0 379 208 6 755 1074 221 34 0 chr11 22405795 22406003 -99437853 + B3 SINE B2 2 216 0 6 755 2008 166 80 27 chr11 22406082 22406484 -99437372 + RLTR23 LTR ERV1 8 430 0 6 755 346 272 22 0 chr11 22406484 22406576 -99437280 - ORR1E LTR MaLR -259 100 7 6 755 387 162 0 87 chr11 22406804 22406987 -99436869 + (CAGGG)n Simple_repeat Simple_repeat 4 170 0 6 755 403 164 0 88 chr11 22407068 22407262 -99436594 + (CAGGG)n Simple_repeat Simple_repeat 4 180 0 6 755 482 226 78 14 chr11 22407237 22407543 -99436313 + (CTGGGG)n Simple_repeat Simple_repeat 1 325 0 6 755 384 22 0 0 chr11 22408257 22408302 -99435554 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 755 225 65 0 0 chr11 22408303 22408334 -99435522 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 755 393 141 31 15 chr11 22408566 22408631 -99435225 - RLTR41 LTR ERV1 -380 66 1 6 755 900 223 36 36 chr11 22409220 22409467 -99434389 - RMER4A LTR ERVK 0 466 220 6 755 2394 195 85 21 chr11 22409467 22409559 -99434297 - RLTR20B1 LTR ERVK 0 563 471 6 755 249 33 0 0 chr11 22409559 22409589 -99434267 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 755 2394 195 85 21 chr11 22409589 22410025 -99433831 - RLTR20B1 LTR ERVK -93 470 1 6 755 271 333 34 34 chr11 22410043 22410189 -99433667 + RMER5 LTR ERV1 269 414 -120 6 755 701 267 74 0 chr11 22410338 22410514 -99433342 - B3 SINE B2 -27 189 1 6 755 225 298 83 38 chr11 22410530 22410687 -99433169 + L1M5 LINE L1 5470 5633 -546 6 755 353 239 54 43 chr11 22411091 22411183 -99432673 - PB1D10 SINE Alu -1 116 24 6 755 233 257 42 14 chr11 22411122 22411193 -99432663 - MT2C_Mm LTR ERVL -269 206 134 6 755 6338 55 0 0 chr11 22411348 22412076 -99431780 + L1_Mus1 LINE L1 5836 6563 -4 6 756 472 200 208 0 chr11 22414121 22414241 -99429615 + B1_Mus2 SINE Alu 3 147 0 6 756 660 188 350 0 chr11 22414360 22414520 -99429336 - B3 SINE B2 0 216 1 6 756 1298 107 10 36 chr11 22414719 22414913 -99428943 + B2_Mm1t SINE B2 1 189 -4 6 756 1270 34 0 20 chr11 22414918 22415067 -99428789 + B1_Mus2 SINE Alu 2 147 0 7 756 190 211 16 95 chr11 22415320 22415383 -99428473 - L2a LINE L2 -18 3408 3351 7 756 1731 114 158 7 chr11 22415484 22415775 -99428081 - ORR1B2 LTR MaLR 0 367 33 7 756 58 0 0 0 chr11 22415800 22415858 -99427998 + AT_rich Low_complexity Low_complexity 1 58 0 7 756 1300 82 40 23 chr11 22415858 22416032 -99427824 - B2_Mm2 SINE B2 -18 177 1 7 756 315 192 0 0 chr11 22416152 22416230 -99427626 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 756 1097 206 31 0 chr11 22416230 22416424 -99427432 - B3 SINE B2 -15 201 2 7 756 306 261 77 33 chr11 22416745 22416836 -99427020 - B1F1 SINE Alu -52 97 3 7 756 338 187 198 0 chr11 22416846 22416937 -99426919 - PB1D9 SINE Alu 0 120 12 7 756 193 333 14 42 chr11 22417645 22417717 -99426139 + MIRc SINE MIR 101 170 -98 7 756 396 310 27 14 chr11 22418955 22419102 -99424754 + Lx7 LINE L1 7212 7360 -336 7 756 1222 204 24 5 chr11 22419290 22419502 -99424354 - B3 SINE B2 0 216 1 7 756 2711 80 3 0 chr11 22419668 22419994 -99423862 - ORR1A2 LTR MaLR 0 327 1 7 756 1324 97 36 5 chr11 22419994 22420190 -99423666 - ORR1A2-int LTR MaLR 0 1963 1762 7 756 759 254 147 45 chr11 22420190 22420524 -99423332 - RLTR9A LTR ERVK 0 368 1 7 756 281 191 50 176 chr11 22420609 22420685 -99423171 - RMER16-int LTR ERVK -27 5379 5314 7 756 1233 75 0 0 chr11 22420685 22420832 -99423024 - B1_Mm SINE Alu 0 147 1 7 756 281 191 50 176 chr11 22420832 22420914 -99422942 - RMER16-int LTR ERVK -93 5313 5241 7 756 1202 48 0 52 chr11 22421153 22421308 -99422548 + B1_Mm SINE Alu 1 147 0 7 756 279 272 267 0 chr11 22421344 22421535 -99422321 - RNERVK23-int LTR ERVK -521 7696 7455 7 756 18724 101 19 39 chr11 22421517 22423832 -99420024 - RMER16-int LTR ERVK -1068 4338 2078 7 756 1343 27 0 0 chr11 22423832 22423979 -99419877 - B1_Mm SINE Alu 0 147 1 7 756 18724 101 19 39 chr11 22423979 22424490 -99419366 - RMER16-int LTR ERVK -3329 2077 1568 7 756 315 358 25 0 chr11 22424486 22424648 -99419208 - RNERVK23-int LTR ERVK -5338 2879 2714 7 756 4007 176 53 76 chr11 22424792 22425713 -99418143 - RMER16-int LTR ERVK -3838 1568 1068 7 756 4707 40 29 14 chr11 22425713 22426265 -99417591 - LTRIS2 LTR ERV1 0 564 5 7 756 4007 169 143 47 chr11 22426265 22426914 -99416942 - RMER16-int LTR ERVK -4339 1067 255 7 756 3054 84 39 2 chr11 22427128 22427534 -99416322 + BGLII LTR ERVK 1 421 0 7 756 601 238 260 33 chr11 22427644 22427944 -99415912 - RLTR9A LTR ERVK 0 368 1 7 756 1779 137 43 7 chr11 22427944 22428242 -99415614 - ORR1A2-int LTR MaLR -196 1767 1459 7 756 2351 131 28 13 chr11 22428242 22428287 -99415569 - ORR1A2-int LTR MaLR -1569 394 353 7 756 3863 52 7 4 chr11 22428287 22428748 -99415108 - L1Md_F2 LINE L1 0 6582 6121 7 756 2351 131 28 13 chr11 22428748 22429090 -99414766 - ORR1A2-int LTR MaLR -1611 352 1 7 756 2101 108 29 3 chr11 22429090 22429397 -99414459 - ORR1A2 LTR MaLR 0 327 13 7 756 580 256 147 44 chr11 22429611 22429836 -99414020 - RMER4B LTR ERVK -9 576 329 7 756 222 37 0 0 chr11 22429840 22429867 -99413989 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 756 666 140 0 0 chr11 22429867 22429981 -99413875 + (TCC)n Simple_repeat Simple_repeat 2 115 0 7 756 559 196 184 64 chr11 22429996 22430230 -99413626 - RMER4B LTR ERVK -278 307 46 7 756 3757 127 11 12 chr11 22430250 22430808 -99413048 - Lx2 LINE L1 -1 6996 6440 7 756 1942 96 0 0 chr11 22430808 22431069 -99412787 + Lx2 LINE L1 5623 5883 -1114 7 756 3734 133 11 20 chr11 22431222 22431834 -99412022 + Lx2 LINE L1 5883 6489 -508 7 756 523 234 105 0 chr11 22431984 22432108 -99411748 - B1F2 SINE Alu 0 149 13 7 756 1181 232 61 4 chr11 22432109 22432386 -99411470 + L1VL2 LINE L1 85 377 -5958 7 756 754 151 0 0 chr11 22432389 22432508 -99411348 + B2_Mm1t SINE B2 64 182 -11 7 756 4568 137 30 15 chr11 22432511 22433917 -99409939 + L1VL2 LINE L1 118 1544 -2071 7 756 9581 168 102 37 chr11 22433888 22434195 -99409661 + Lx LINE L1 3518 3838 -2039 7 756 1570 55 16 0 chr11 22434195 22434378 -99409478 + B2_Mm1t SINE B2 1 186 -7 7 756 9581 168 102 37 chr11 22434378 22434888 -99408968 + Lx LINE L1 3839 4422 -1455 7 756 3681 25 2 0 chr11 22434888 22435283 -99408573 - MTA_Mm LTR MaLR 0 396 1 7 756 10329 15 0 0 chr11 22435283 22436381 -99407475 - MTA_Mm-int LTR MaLR 0 1098 1 7 756 3681 25 2 0 chr11 22436381 22436776 -99407080 - MTA_Mm LTR MaLR 0 396 1 7 756 9581 134 57 20 chr11 22436776 22438937 -99404919 + Lx LINE L1 4423 6654 0 7 756 318 87 0 0 chr11 22440056 22440102 -99403754 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 756 1026 73 205 0 chr11 22440104 22440255 -99403601 - B2_Mm1t SINE B2 -11 182 1 7 756 842 205 49 45 chr11 22440259 22440545 -99403311 + RLTR15 LTR ERVK 33 319 -40 7 756 3015 250 37 55 chr11 22441573 22442225 -99401631 + MYSERV-int LTR ERVK 3772 4408 -2142 7 756 1101 57 0 0 chr11 22442225 22442366 -99401490 + (GAAA)n Simple_repeat Simple_repeat 4 144 0 7 756 3015 250 37 55 chr11 22442366 22442389 -99401467 + MYSERV-int LTR ERVK 4409 4429 -2121 7 756 994 196 206 184 chr11 22442389 22442525 -99401331 - RMER6B LTR ERVK 0 461 329 7 756 306 50 0 0 chr11 22442525 22442565 -99401291 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 756 994 196 206 184 chr11 22442565 22442608 -99401248 - RMER6B LTR ERVK -133 328 320 7 756 1061 92 17 6 chr11 22442608 22442782 -99401074 + (GAA)n Simple_repeat Simple_repeat 3 178 0 7 756 994 196 206 184 chr11 22442782 22443052 -99400804 - RMER6B LTR ERVK -142 319 2 7 756 3015 258 49 62 chr11 22443052 22443801 -99400055 + MYSERV-int LTR ERVK 4430 5138 -1412 7 756 828 206 166 14 chr11 22443799 22444023 -99399833 - MYSERV-int LTR ERVK -794 5756 5501 7 756 1279 27 0 0 chr11 22444023 22444170 -99399686 + B1_Mm SINE Alu 1 147 0 7 756 827 225 64 69 chr11 22444170 22444219 -99399637 - MYSERV-int LTR ERVK -997 7962 7912 7 756 1217 54 0 0 chr11 22444219 22444366 -99399490 + B1_Mm SINE Alu 1 147 0 7 756 827 225 64 69 chr11 22444366 22444413 -99399443 - MYSERV-int LTR ERVK -1048 7911 7870 7 756 351 0 0 0 chr11 22444413 22444452 -99399404 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 756 827 150 75 0 chr11 22444452 22444565 -99399291 - MYSERV-int LTR ERVK -1031 7928 7806 7 756 180 0 0 0 chr11 22445177 22445197 -99398659 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 7 756 1215 50 6 0 chr11 22445197 22445358 -99398498 - B2_Mm2 SINE B2 -32 163 2 7 756 741 260 34 39 chr11 22445501 22445742 -99398114 - B4A SINE B4 -33 259 25 7 756 250 120 200 0 chr11 22445712 22445762 -99398094 + B1_Mur4 SINE Alu 62 121 -29 7 756 34 42 0 0 chr11 22445815 22445863 -99397993 + AT_rich Low_complexity Low_complexity 1 48 0 7 756 332 191 112 92 chr11 22445953 22446051 -99397805 + B1_Mur2 SINE Alu 2 101 -48 7 756 9172 111 38 21 chr11 22446461 22448175 -99395681 + Lx4B LINE L1 5304 7058 0 7 756 277 276 127 18 chr11 22448863 22449029 -99394827 + MER31-int LTR ERV1 3075 3258 -1678 7 756 461 209 0 33 chr11 22449512 22449695 -99394161 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 756 328 236 226 0 chr11 22449780 22449886 -99393970 - B1F SINE Alu -9 140 11 7 756 32 26 0 0 chr11 22450110 22450149 -99393707 + AT_rich Low_complexity Low_complexity 1 39 0 7 756 363 98 0 0 chr11 22450491 22450552 -99393304 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 756 502 310 19 0 chr11 22450572 22450727 -99393129 + RMER15 LTR ERVL 404 561 -14 7 756 314 308 0 0 chr11 22452052 22452130 -99391726 + RSINE1 SINE B4 3 80 -85 7 756 443 156 120 40 chr11 22452489 22452589 -99391267 + PB1D9 SINE Alu 13 120 0 7 756 261 230 27 0 chr11 22452592 22452666 -99391190 + GA-rich Low_complexity Low_complexity 2 77 0 7 756 207 0 0 0 chr11 22452746 22452769 -99391087 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 7 756 370 376 82 29 chr11 22452875 22453119 -99390737 - L1ME4a LINE L1 -294 5830 5574 7 756 345 141 0 0 chr11 22453262 22453333 -99390523 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 756 402 188 50 0 chr11 22454946 22455026 -99388830 + B1F SINE Alu 52 135 -14 7 756 261 0 0 0 chr11 22455026 22455055 -99388801 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 7 756 407 278 87 0 chr11 22455413 22455528 -99388328 - PB1 SINE Alu 0 127 3 7 756 303 225 29 207 chr11 22455528 22455606 -99388250 - ID SINE ID -144 80 34 7 756 532 303 58 31 chr11 22455889 22456080 -99387776 + B4A SINE B4 14 209 -83 7 756 196 250 306 15 chr11 22456223 22456357 -99387499 + MIRb SINE MIR 31 203 -65 7 756 2426 164 26 28 chr11 22456442 22456870 -99386986 - RMER16-int LTR ERVK -4979 427 1 7 756 2025 155 21 22 chr11 22456870 22457274 -99386582 - RMER16 LTR ERVK 0 533 1 7 756 630 210 239 0 chr11 22457337 22457504 -99386352 + B3 SINE B2 1 207 -9 7 756 1110 72 0 0 chr11 22458189 22458327 -99385529 + B1_Mus2 SINE Alu 1 138 -9 7 756 207 0 0 0 chr11 22458327 22458350 -99385506 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 756 204 328 76 17 chr11 22458482 22458600 -99385256 - MIRb SINE MIR -89 179 55 7 756 266 269 37 37 chr11 22458836 22458944 -99384912 + Charlie19a DNA Charlie 146 253 -133 7 756 355 253 24 0 chr11 22459368 22459451 -99384405 + B3A SINE B2 19 103 -95 7 756 277 225 86 43 chr11 22459544 22459637 -99384219 + B4 SINE B4 43 139 -153 7 756 22 0 0 0 chr11 22459769 22459791 -99384065 + AT_rich Low_complexity Low_complexity 1 22 0 7 756 1408 64 26 11 chr11 22459914 22460074 -99383782 + B2_Mm1a SINE B2 1 160 -33 7 756 207 0 0 0 chr11 22460074 22460097 -99383759 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 756 1408 64 26 11 chr11 22460097 22460126 -99383730 + B2_Mm1a SINE B2 161 193 0 7 756 399 250 0 0 chr11 22461303 22461451 -99382405 + (TG)n Simple_repeat Simple_repeat 1 148 0 7 756 502 267 126 16 chr11 22461551 22461676 -99382180 - B4A SINE B4 -66 226 87 7 756 245 29 0 29 chr11 22461676 22461711 -99382145 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7 756 502 267 126 16 chr11 22461711 22461768 -99382088 - B4A SINE B4 -206 86 26 7 756 180 0 0 0 chr11 22462049 22462069 -99381787 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 756 353 39 20 0 chr11 22462710 22462761 -99381095 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 7 756 594 309 125 33 chr11 22463733 22464124 -99379732 + MLT1D LTR MaLR 3 429 -76 7 756 382 240 42 0 chr11 22465216 22465312 -99378544 - ORR1C2 LTR MaLR -199 185 86 7 756 1263 150 126 4 chr11 22465319 22465577 -99378279 + RLTR18 LTR ERVK 8 297 -319 7 756 2286 182 75 17 chr11 22465577 22466098 -99377758 + RLTR12A LTR ERVK 1 551 -17 7 756 1809 171 22 3 chr11 22466102 22466425 -99377431 + RLTR18 LTR ERVK 288 616 0 7 756 235 132 0 0 chr11 22466425 22466463 -99377393 - ORR1C2 LTR MaLR -303 81 44 7 756 995 61 0 0 chr11 22466452 22466584 -99377272 + ORR1A3 LTR MaLR 154 285 -41 7 756 1172 74 0 7 chr11 22466585 22466734 -99377122 + B1_Mus1 SINE Alu 1 148 0 7 756 301 64 0 113 chr11 22466771 22466824 -99377032 + ORR1A3 LTR MaLR 272 318 -8 7 756 344 86 103 0 chr11 22466829 22466887 -99376969 + ORR1A3-int LTR MaLR 2 65 -1727 7 756 442 84 127 0 chr11 22466887 22466958 -99376898 + ORR1A3 LTR MaLR 247 326 0 7 756 617 0 14 0 chr11 22467036 22467109 -99376747 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 756 474 33 0 0 chr11 22467238 22467298 -99376558 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 756 21 36 0 0 chr11 22467327 22467355 -99376501 + AT_rich Low_complexity Low_complexity 1 28 0 7 756 481 280 104 99 chr11 22467972 22468266 -99375590 - ORR1E LTR MaLR -12 347 55 7 756 3552 18 2 0 chr11 22468266 22468661 -99375195 - MTA_Mm LTR MaLR 0 396 1 8 756 8953 44 6 1 chr11 22468661 22469753 -99374103 - MTA_Mm-int LTR MaLR 0 1098 1 8 756 3512 18 5 0 chr11 22469753 22470147 -99373709 - MTA_Mm LTR MaLR 0 396 1 8 756 481 280 104 99 chr11 22470147 22470195 -99373661 - ORR1E LTR MaLR -305 54 4 7 756 219 287 25 107 chr11 22470250 22470371 -99373485 + PB1D10 SINE Alu 5 115 -2 8 756 1098 205 174 7 chr11 22470531 22470830 -99373026 - ORR1D1 LTR MaLR 0 374 26 8 756 3152 144 18 21 chr11 22470830 22471389 -99372467 - RLTR20B3 LTR ERVK 0 577 21 8 756 4979 207 57 24 chr11 22471420 22471578 -99372278 - ORR1D1-int LTR MaLR 0 1370 1205 8 756 180 0 0 0 chr11 22471578 22471598 -99372258 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 8 756 4979 207 57 24 chr11 22471598 22471610 -99372246 - ORR1D1-int LTR MaLR -166 1204 1194 8 756 651 197 87 0 chr11 22471610 22471737 -99372119 + B1_Mur3 SINE Alu 1 138 -11 8 756 180 0 0 0 chr11 22471747 22471767 -99372089 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 756 4979 207 57 24 chr11 22471767 22472753 -99371103 - ORR1D1-int LTR MaLR -180 1190 165 8 756 447 307 69 60 chr11 22473046 22473264 -99370592 + MLT2F LTR ERVL 204 423 -240 8 756 1119 102 0 13 chr11 22474270 22474419 -99369437 - B1_Mus2 SINE Alu 0 147 1 8 756 22 0 0 0 chr11 22475063 22475085 -99368771 + AT_rich Low_complexity Low_complexity 1 22 0 8 756 4974 200 120 24 chr11 22475230 22476477 -99367379 + ORR1C1-int LTR MaLR 4 1370 0 8 756 1343 149 249 10 chr11 22476477 22476635 -99367221 + ORR1C1 LTR MaLR 1 163 -215 8 756 609 52 0 0 chr11 22476635 22476712 -99367144 + (TC)n Simple_repeat Simple_repeat 2 78 0 8 756 1343 149 249 10 chr11 22476712 22476858 -99366998 + ORR1C1 LTR MaLR 164 377 -1 8 756 1431 183 124 35 chr11 22476867 22477213 -99366643 - MTD LTR MaLR -4 415 39 8 756 1381 106 9 5 chr11 22477319 22477537 -99366319 + URR1A DNA MER1_type 7 225 -1 8 756 3213 8 5 34 chr11 22477703 22478081 -99365775 + IAPLTR1_Mm LTR ERVK 1 367 0 8 756 8794 74 65 17 chr11 22478083 22479387 -99364469 + IAPEz-int LTR ERVK 3 1313 -5168 8 756 29741 17 1 0 chr11 22479386 22482654 -99361202 + IAPEz-int LTR ERVK 3210 6481 0 8 756 3229 8 0 39 chr11 22482654 22483036 -99360820 + IAPLTR1_Mm LTR ERVK 1 367 0 8 756 21 0 0 0 chr11 22483043 22483064 -99360792 + AT_rich Low_complexity Low_complexity 1 21 0 8 756 552 218 139 60 chr11 22483209 22483622 -99360234 - RLTR12B LTR ERVK -37 322 1 8 756 824 214 102 0 chr11 22483787 22483983 -99359873 + B3 SINE B2 1 216 0 8 756 180 0 0 0 chr11 22487028 22487048 -99356808 + (A)n Simple_repeat Simple_repeat 1 20 0 8 756 641 141 157 0 chr11 22487164 22487285 -99356571 + B1_Mus1 SINE Alu 1 140 -8 8 756 590 235 52 0 chr11 22488240 22488376 -99355480 - B1F2 SINE Alu -5 144 2 8 756 206 224 17 0 chr11 22488591 22488649 -99355207 + C-rich Low_complexity Low_complexity 1 59 0 8 756 1742 154 123 42 chr11 22488962 22489369 -99354487 + RMER10A LTR ERVL 1 440 -2 8 756 345 66 0 47 chr11 22489918 22489982 -99353874 + (TCC)n Simple_repeat Simple_repeat 1 61 0 8 756 213 314 0 0 chr11 22490583 22490634 -99353222 + C-rich Low_complexity Low_complexity 5 55 0 8 756 4255 48 4 0 chr11 22490782 22491283 -99352573 + RLTR1C LTR ERV1 1 503 0 8 756 4758 50 19 2 chr11 22491360 22491937 -99351919 - LTRIS_Mus LTR ERV1 0 587 1 8 756 563 276 33 51 chr11 22491966 22492180 -99351676 + RodERV21-int LTR ERV1 106 315 -4676 8 756 404 300 91 112 chr11 22492019 22492458 -99351398 + RMER17C-int LTR ERVK 95 524 -2714 8 756 5100 251 96 101 chr11 22492397 22493128 -99350728 + RodERV21-int LTR ERV1 693 1401 -3590 8 756 1229 41 0 0 chr11 22493128 22493275 -99350581 + B1_Mm SINE Alu 1 147 0 8 756 5100 251 96 101 chr11 22493275 22494196 -99349660 + RodERV21-int LTR ERV1 1402 2356 -2635 8 756 3346 20 15 0 chr11 22494196 22494586 -99349270 - MTA_Mm LTR MaLR 0 396 1 8 756 9383 34 3 1 chr11 22494586 22495682 -99348174 - MTA_Mm-int LTR MaLR 0 1098 1 8 756 3449 23 5 2 chr11 22495682 22496077 -99347779 - MTA_Mm LTR MaLR 0 396 1 8 756 5100 251 96 101 chr11 22496077 22496336 -99347520 + RodERV21-int LTR ERV1 2357 2616 -2375 8 756 2377 127 30 131 chr11 22496336 22496872 -99346984 + RLTR45 LTR ERVK 1 482 0 8 756 5100 251 96 101 chr11 22496872 22496958 -99346898 + RodERV21-int LTR ERV1 2617 2685 -2306 8 756 2280 116 6 0 chr11 22496958 22497285 -99346571 + ORR1A4 LTR MaLR 1 329 0 8 756 5100 251 96 101 chr11 22497285 22497318 -99346538 + RodERV21-int LTR ERV1 2686 2715 -2276 8 756 268 281 94 94 chr11 22497715 22497927 -99345929 + RodERV21-int LTR ERV1 3860 4071 -3020 8 756 1940 150 11 37 chr11 22499342 22499848 -99344008 + RLTR28 LTR ERVL 62 519 -5 8 756 498 176 0 11 chr11 22499908 22500000 -99343856 - RLTR41 LTR ERV1 0 446 356 8 756 1369 169 52 0 chr11 22500000 22500213 -99343643 - RLTR41 LTR ERV1 -91 355 132 1 756 1783 141 74 108 chr11 22500218 22500625 -99343231 - RLTR9C LTR ERVK 0 393 1 2 756 571 111 195 148 chr11 22500644 22500813 -99343043 - RLTR41 LTR ERV1 -269 177 1 1 756 688 206 7 44 chr11 22500822 22500959 -99342897 + B1_Mur1 SINE Alu 18 149 0 3 756 312 27 0 0 chr11 22501279 22501316 -99342540 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 756 252 0 0 0 chr11 22501316 22501343 -99342513 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 756 220 130 35 69 chr11 22501782 22501840 -99342016 + C-rich Low_complexity Low_complexity 1 56 0 6 756 885 228 129 82 chr11 22502438 22502802 -99341054 - RMER17C LTR ERVK -29 381 1 7 756 1659 184 29 76 chr11 22503245 22503627 -99340229 - RMER10B LTR ERVL 0 398 35 8 756 309 232 29 0 chr11 22503646 22503715 -99340141 + RodERV21-int LTR ERV1 1510 1580 -3411 9 756 1288 220 24 8 chr11 22503754 22504006 -99339850 + RodERV21-int LTR ERV1 61 316 -4675 1 756 7507 254 34 48 chr11 22504132 22506256 -99337600 + RodERV21-int LTR ERV1 625 2718 -2273 1 756 3470 151 21 74 chr11 22506428 22507106 -99336750 + RLTR26 LTR ERVK 1 642 0 1 756 526 279 91 56 chr11 22507323 22507555 -99336301 + RodERV21-int LTR ERV1 3837 4076 -3015 1 756 4221 148 37 3 chr11 22507824 22508493 -99335363 + RLTR17 LTR ERVK 1 692 0 1 756 255 200 74 74 chr11 22508579 22508660 -99335196 + MER52-int LTR ERV1 3620 3700 -3906 1 756 279 330 39 39 chr11 22508781 22509011 -99334845 + MER52-int LTR ERV1 4874 5103 -1988 1 756 351 0 0 0 chr11 22509074 22509113 -99334743 + (A)n Simple_repeat Simple_repeat 1 39 0 1 756 285 289 0 0 chr11 22509537 22509613 -99334243 + MMERGLN-int LTR ERV1 4816 4891 -2665 1 756 732 188 23 0 chr11 22509783 22509911 -99333945 + B1_Mur3 SINE Alu 1 131 -18 1 756 423 0 0 0 chr11 22509942 22509989 -99333867 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 756 198 276 69 95 chr11 22510007 22510123 -99333733 - MER5B DNA MER1_type -59 119 7 1 756 331 281 69 69 chr11 22511748 22511878 -99331978 - RMER4B LTR ERVK -109 476 347 1 756 1251 293 26 28 chr11 22511916 22512373 -99331483 - RodERV21-int LTR ERV1 -198 4793 4338 2 756 394 309 48 47 chr11 22512571 22512904 -99330952 - RodERV21-int LTR ERV1 -1988 5103 4870 2 756 1484 172 40 81 chr11 22513378 22513839 -99330017 - RLTR41 LTR ERV1 -41 405 1 2 756 1106 59 7 0 chr11 22515889 22516024 -99327832 + B1_Mus1 SINE Alu 1 136 -12 2 756 189 0 0 0 chr11 22516024 22516045 -99327811 + (G)n Simple_repeat Simple_repeat 1 21 0 2 756 342 67 0 0 chr11 22516165 22516210 -99327646 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2 756 216 0 0 0 chr11 22516237 22516261 -99327595 + (T)n Simple_repeat Simple_repeat 1 24 0 2 756 270 216 216 0 chr11 22518152 22518226 -99325630 + MLT1D LTR MaLR 2 91 -414 2 756 426 281 132 12 chr11 22518361 22518527 -99325329 + MLT1D LTR MaLR 308 493 -12 2 756 353 283 44 0 chr11 22518853 22518966 -99324890 + L1MD LINE L1 5511 5628 -731 2 756 479 248 81 92 chr11 22519009 22519069 -99324787 - RLTR20B1 LTR ERVK -13 550 502 2 756 3486 23 5 0 chr11 22519069 22519463 -99324393 + MTA_Mm LTR MaLR 1 396 0 2 756 479 248 81 92 chr11 22519463 22519495 -99324361 - RLTR20B1 LTR ERVK -62 501 470 2 756 225 0 0 0 chr11 22519495 22519520 -99324336 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 756 1531 170 111 14 chr11 22519520 22519827 -99324029 - RLTR20B1 LTR ERVK -94 469 1 2 756 344 320 195 4 chr11 22519830 22520087 -99323769 + L1ME2 LINE L1 5644 5949 -215 3 756 345 252 104 35 chr11 22520087 22520202 -99323654 + B1_Mur2 SINE Alu 1 123 -26 3 756 781 57 0 45 chr11 22520593 22520606 -99323250 - B1_Mm SINE Alu 0 147 138 3 756 261 57 0 0 chr11 22520606 22520641 -99323215 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 756 781 57 0 45 chr11 22520641 22520738 -99323118 - B1_Mm SINE Alu -10 137 42 3 756 337 204 20 61 chr11 22520654 22520753 -99323103 - RLTR25B LTR ERVK -507 521 427 3 756 245 268 171 0 chr11 22520794 22520876 -99322980 - PB1D10 SINE Alu -21 96 1 3 756 782 216 131 5 chr11 22521138 22521329 -99322527 + RLTR11A LTR ERVK 17 231 -297 3 756 462 206 0 45 chr11 22521331 22521443 -99322413 + RLTR11A LTR ERVK 422 528 0 3 756 281 313 72 99 chr11 22521771 22521994 -99321862 - LTR48B LTR ERV1 -280 364 148 3 756 239 292 14 0 chr11 22522443 22522515 -99321341 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 756 305 321 291 14 chr11 22523489 22523846 -99320010 + L2a LINE L2 2971 3426 0 4 756 455 273 121 67 chr11 22523940 22524089 -99319767 - RSINE1 SINE B4 -1 164 8 4 756 1142 62 0 20 chr11 22524561 22524573 -99319283 - B1_Mus2 SINE Alu 0 147 138 4 756 306 0 0 0 chr11 22524573 22524607 -99319249 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 756 1142 62 0 20 chr11 22524607 22524743 -99319113 - B1_Mus2 SINE Alu -10 137 2 4 756 770 180 24 10 chr11 22524744 22525043 -99318813 + CT-rich Low_complexity Low_complexity 1 303 0 4 756 585 111 287 0 chr11 22525080 22525188 -99318668 - B1_Mus2 SINE Alu 0 147 9 4 756 261 260 0 52 chr11 22525140 22525217 -99318639 - B4 SINE B4 -151 141 69 4 756 294 296 12 12 chr11 22525217 22525299 -99318557 - ID4_ SINE ID 0 83 2 4 756 23 33 0 0 chr11 22525484 22525514 -99318342 + AT_rich Low_complexity Low_complexity 1 30 0 4 756 1121 216 53 4 chr11 22525564 22525792 -99318064 - MTE2a LTR MaLR 0 379 141 4 756 1041 60 0 0 chr11 22525791 22525925 -99317931 + B1_Mus1 SINE Alu 13 146 -2 5 756 726 12 0 0 chr11 22525925 22526008 -99317848 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 756 553 237 45 8 chr11 22526008 22526140 -99317716 - MTE2a LTR MaLR -240 139 3 4 756 599 246 45 0 chr11 22526149 22526283 -99317573 - B1F SINE Alu -8 141 2 5 756 191 125 25 0 chr11 22526763 22526803 -99317053 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 756 2026 160 106 32 chr11 22526840 22527346 -99316510 + RLTR31A_Mm LTR ERVK 1 557 0 5 756 418 264 87 34 chr11 22527350 22527499 -99316357 - B4A SINE B4 -7 285 129 5 756 446 306 16 8 chr11 22528287 22528409 -99315447 + RSINE1 SINE B4 3 125 -40 5 756 607 92 18 0 chr11 22528416 22528525 -99315331 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 756 966 97 0 0 chr11 22529379 22529523 -99314333 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 5 756 271 319 63 24 chr11 22530417 22530590 -99313266 + L2a LINE L2 3075 3258 -129 5 756 704 248 26 56 chr11 22530625 22530856 -99313000 - ID_B1 SINE B4 0 224 1 6 756 441 0 0 0 chr11 22530887 22530936 -99312920 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 756 204 358 108 0 chr11 22531386 22531506 -99312350 + L2a LINE L2 3293 3425 -1 5 756 300 270 113 79 chr11 22532954 22533131 -99310725 + MIRb SINE MIR 63 245 -23 6 756 285 329 81 40 chr11 22533305 22533454 -99310402 - MER20 DNA MER1_type -8 211 57 6 756 234 160 39 20 chr11 22533492 22533543 -99310313 + Lx9 LINE L1 7082 7133 -511 6 756 1123 208 124 89 chr11 22533543 22533997 -99309859 + RMER4B LTR ERVK 2 466 0 6 756 490 328 51 15 chr11 22534021 22534216 -99309640 + Lx8 LINE L1 7028 7229 -244 6 756 863 172 0 14 chr11 22534875 22535022 -99308834 - B1F2 SINE Alu -4 145 1 6 756 400 60 0 0 chr11 22535483 22535533 -99308323 - B1_Mus1 SINE Alu -98 50 1 6 756 340 214 14 14 chr11 22535533 22535544 -99308312 - B4A SINE B4 -148 114 74 6 756 1046 145 11 32 chr11 22535551 22535736 -99308120 - ORR1D1 LTR MaLR 0 374 194 7 756 477 0 0 0 chr11 22535749 22535802 -99308054 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 7 756 344 346 61 12 chr11 22536368 22536532 -99307324 + MIR SINE MIR 69 240 -22 7 756 654 342 29 29 chr11 22537026 22537270 -99306586 - MLT1F1 LTR MaLR -18 551 308 7 756 663 292 72 0 chr11 22537634 22537829 -99306027 + ID_B1 SINE B4 2 210 -14 7 756 459 0 0 0 chr11 22537950 22538001 -99305855 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 756 25 0 0 0 chr11 22538475 22538500 -99305356 + AT_rich Low_complexity Low_complexity 1 25 0 7 756 792 163 16 60 chr11 22539056 22539239 -99304617 + B2_Mm2 SINE B2 3 177 -18 7 756 1293 103 0 0 chr11 22539240 22539566 -99304290 + (GGA)n Simple_repeat Simple_repeat 1 326 0 7 756 2768 67 138 5 chr11 22539612 22540018 -99303838 + MusHAL1 LINE L1 2111 2570 -142 7 756 620 181 8 0 chr11 22540177 22540304 -99303552 + GA-rich Low_complexity Low_complexity 3 130 0 8 756 467 227 54 9 chr11 22541517 22541628 -99302228 - Lx8 LINE L1 -763 6710 6595 8 756 300 250 0 0 chr11 22541678 22541738 -99302118 - Lx8 LINE L1 -863 6610 6551 8 756 316 283 0 52 chr11 22541722 22541819 -99302037 + Lx8 LINE L1 6688 6779 -694 8 756 472 18 0 0 chr11 22541822 22541877 -99301979 - ORR1A3 LTR MaLR 0 326 272 8 756 180 0 0 0 chr11 22541877 22541897 -99301959 + (T)n Simple_repeat Simple_repeat 1 20 0 8 756 8221 99 33 59 chr11 22541909 22544114 -99299742 - Lx3B LINE L1 -4 6969 4851 8 757 317 266 74 63 chr11 22544628 22544817 -99299039 - L1MC5 LINE L1 -37 7924 7734 8 757 438 276 30 59 chr11 22544881 22545016 -99298840 - RSINE1 SINE B4 -32 133 3 8 757 276 280 13 0 chr11 22545597 22545672 -99298184 + ID4 SINE ID 7 82 -1 8 757 383 317 74 47 chr11 22545737 22545753 -99298103 - RSINE1 SINE B4 -11 154 142 8 757 369 0 0 0 chr11 22545753 22545794 -99298062 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 757 383 317 74 47 chr11 22545794 22545926 -99297930 - RSINE1 SINE B4 -24 141 2 8 757 487 289 50 86 chr11 22546443 22546663 -99297193 + MLT1A LTR MaLR 34 245 -129 9 757 293 336 40 27 chr11 22546834 22546984 -99296872 + MLT1A LTR MaLR 214 365 0 9 757 4698 154 86 6 chr11 22547007 22547847 -99296009 - RMER13B LTR ERVK 0 908 2 9 757 1154 74 0 7 chr11 22548769 22548918 -99294938 + B1_Mus1 SINE Alu 1 148 0 9 757 502 287 130 20 chr11 22549098 22549244 -99294612 + B3A SINE B2 6 167 -31 9 757 180 0 0 0 chr11 22549249 22549269 -99294587 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 757 594 0 0 0 chr11 22549301 22549367 -99294489 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 757 413 248 204 0 chr11 22549408 22549521 -99294335 + ID_B1 SINE B4 82 217 -7 9 757 479 340 88 5 chr11 22550132 22550332 -99293524 - MLT1A LTR MaLR -13 361 145 9 757 384 311 68 112 chr11 22550332 22550726 -99293130 + MTEa LTR MaLR 3 379 0 9 757 1829 216 130 109 chr11 22550794 22551553 -99292303 - RMER17B LTR ERVK -183 775 1 9 757 282 341 9 58 chr11 22551749 22551876 -99291980 - MLT1A LTR MaLR -250 124 9 9 757 475 263 9 9 chr11 22551896 22552011 -99291845 - MLT1C LTR MaLR -352 115 1 1 757 236 269 209 30 chr11 22552457 22552591 -99291265 + MER5A DNA MER1_type 1 158 -31 1 757 250 290 27 45 chr11 22552649 22552761 -99291095 - L1MA10 LINE L1 -44 6290 6181 1 757 381 277 134 14 chr11 22552925 22553134 -99290722 - L1M4 LINE L1 -376 5803 5570 1 757 700 162 18 0 chr11 22553158 22553269 -99290587 + B3A SINE B2 1 113 -85 1 757 290 349 54 72 chr11 22553269 22553325 -99290531 + RSINE1 SINE B4 2 165 0 1 757 960 197 155 32 chr11 22553329 22553607 -99290249 + RLTR20C LTR ERVK 1 312 -222 1 757 682 245 9 42 chr11 22553599 22553773 -99290083 + RLTR20C LTR ERVK 342 566 -12 1 757 959 186 97 10 chr11 22553827 22554023 -99289833 - B3 SINE B2 -1 215 3 1 757 631 290 165 11 chr11 22554027 22554499 -99289357 - L1M4 LINE L1 -2411 5584 5036 1 757 336 48 0 0 chr11 22554516 22554558 -99289298 + (TAG)n Simple_repeat Simple_repeat 1 42 0 1 757 257 239 209 0 chr11 22554571 22554638 -99289218 + PB1D10 SINE Alu 10 90 -27 1 757 220 265 20 0 chr11 22554702 22554751 -99289105 + RSINE1 SINE B4 14 63 -102 1 757 23 0 0 0 chr11 22554755 22554778 -99289078 + AT_rich Low_complexity Low_complexity 1 23 0 1 757 339 257 23 94 chr11 22554877 22555023 -99288833 - L1M4 LINE L1 -1163 4983 4846 1 757 377 204 24 41 chr11 22555130 22555299 -99288557 + (TA)n Simple_repeat Simple_repeat 2 167 0 1 757 616 258 53 24 chr11 22555446 22555595 -99288261 + ID_B1 SINE B4 70 211 -13 1 757 624 221 8 8 chr11 22555592 22555715 -99288141 + B1_Mur2 SINE Alu 24 146 -3 1 757 495 232 70 23 chr11 22555758 22555886 -99287970 + B1F2 SINE Alu 5 138 -11 1 757 549 44 0 0 chr11 22557459 22557527 -99286329 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 757 324 279 63 14 chr11 22558380 22558522 -99285334 + HAL1b LINE L1 859 1007 -1002 1 757 511 312 39 10 chr11 22558527 22558731 -99285125 - ORR1E LTR MaLR -149 210 1 1 757 1393 122 51 219 chr11 22558890 22559383 -99284473 - RMER17C LTR ERVK 0 410 1 1 757 9408 109 70 80 chr11 22559383 22559713 -99284143 - RMER17C-int LTR ERVK 0 3238 2900 1 757 486 0 0 0 chr11 22559713 22559767 -99284089 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 757 9408 109 70 80 chr11 22559767 22560105 -99283751 - RMER17C-int LTR ERVK -339 2899 2565 1 757 3101 43 56 8 chr11 22560105 22560500 -99283356 + L1Md_F2 LINE L1 6168 6581 -1 1 757 9408 109 70 80 chr11 22560500 22561609 -99282247 - RMER17C-int LTR ERVK -674 2564 1480 1 757 275 141 296 0 chr11 22561639 22561710 -99282146 - RMER17C-int LTR ERVK -1894 1344 1253 1 757 831 21 0 0 chr11 22562771 22562868 -99280988 + (GGGAGA)n Simple_repeat Simple_repeat 1 97 0 1 757 2724 161 78 125 chr11 22562993 22563711 -99280145 - RMER17C-int LTR ERVK -2554 684 1 1 757 1859 132 15 132 chr11 22563712 22564176 -99279680 - RMER17C LTR ERVK 0 410 1 1 757 436 233 70 0 chr11 22564193 22564322 -99279534 - MLT1B LTR MaLR -192 198 61 1 757 1693 31 0 0 chr11 22564444 22564636 -99279220 + B2_Mm1a SINE B2 2 193 0 1 757 295 274 80 48 chr11 22564807 22564995 -99278861 + HAL1b LINE L1 1625 1818 -191 1 757 257 197 0 16 chr11 22565144 22565206 -99278650 + C-rich Low_complexity Low_complexity 1 61 0 1 757 471 246 8 47 chr11 22565491 22565619 -99278237 + ID_B1 SINE B4 81 203 -21 1 757 259 181 65 28 chr11 22565660 22565768 -99278088 + G-rich Low_complexity Low_complexity 5 116 0 1 757 512 232 17 17 chr11 22565782 22566033 -99277823 + G-rich Low_complexity Low_complexity 1 251 0 1 757 228 274 0 0 chr11 22566433 22566484 -99277372 + ID4_ SINE ID 29 79 -4 1 757 431 242 50 8 chr11 22566792 22566913 -99276943 - B4A SINE B4 -61 231 106 1 757 224 284 52 93 chr11 22566903 22567000 -99276856 - B3A SINE B2 -102 96 4 1 757 712 226 22 0 chr11 22567327 22567464 -99276392 + RSINE1 SINE B4 2 141 -24 1 757 474 253 54 14 chr11 22568351 22568499 -99275357 + RSINE1 SINE B4 10 163 -2 1 757 563 232 80 0 chr11 22568544 22568695 -99275161 + RSINE1 SINE B4 1 163 -2 1 757 1037 204 33 19 chr11 22570013 22570223 -99273633 + B3 SINE B2 1 213 -3 1 757 23 0 0 0 chr11 22570228 22570251 -99273605 + AT_rich Low_complexity Low_complexity 1 23 0 1 757 1209 62 0 0 chr11 22570299 22570445 -99273411 - B1_Mus2 SINE Alu 0 147 2 1 757 24 32 0 0 chr11 22570445 22570476 -99273380 + AT_rich Low_complexity Low_complexity 1 31 0 1 757 711 204 22 7 chr11 22572778 22572916 -99270940 + B1_Mur1 SINE Alu 10 149 0 1 757 306 0 0 0 chr11 22572916 22572950 -99270906 + (A)n Simple_repeat Simple_repeat 1 34 0 1 757 273 29 0 0 chr11 22573391 22573425 -99270431 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 757 1192 57 0 12 chr11 22573425 22573586 -99270270 - B2_Mm1a SINE B2 -33 160 2 1 757 375 121 0 0 chr11 22573626 22573684 -99270172 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 757 1031 261 72 4 chr11 22573689 22573954 -99269902 - B4A SINE B4 -8 284 2 1 757 813 178 0 14 chr11 22574086 22574234 -99269622 + B1_Mus2 SINE Alu 1 146 -1 1 757 244 290 16 0 chr11 22574651 22574713 -99269143 + ID4_ SINE ID 2 64 -19 1 757 736 270 199 62 chr11 22575842 22576248 -99267608 - MLT1F1 LTR MaLR -105 464 3 1 757 297 109 0 0 chr11 22576295 22576341 -99267515 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 757 443 301 43 5 chr11 22576348 22576532 -99267324 - LTR82A LTR ERVL -175 697 507 1 757 378 0 0 0 chr11 22576591 22576633 -99267223 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 757 1046 241 0 0 chr11 22576868 22577084 -99266772 + B3 SINE B2 1 216 0 1 757 30880 134 20 8 chr11 22577295 22580072 -99263784 + L1_Mus3 LINE L1 571 3302 -2581 1 757 315 0 0 0 chr11 22580072 22580107 -99263749 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 757 30880 99 24 4 chr11 22580107 22583372 -99260484 + L1_Mus3 LINE L1 3303 6638 0 1 757 255 61 0 0 chr11 22583375 22583408 -99260448 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 757 438 188 27 13 chr11 22583430 22583548 -99260308 - PB1D10 SINE Alu -27 120 1 1 757 482 319 88 32 chr11 22583548 22583833 -99260023 - LTR82A LTR ERVL -457 415 115 1 757 474 250 37 0 chr11 22583840 22583948 -99259908 + B1F SINE Alu 3 114 -35 1 757 899 139 28 7 chr11 22584057 22584202 -99259654 - B1_Mur4 SINE Alu -2 148 1 1 757 623 300 85 11 chr11 22584664 22584934 -99258922 + MTE-int LTR MaLR 1 290 -1290 1 757 873 189 85 24 chr11 22584937 22585148 -99258708 - MTD LTR MaLR 0 419 196 1 757 717 98 28 14 chr11 22585148 22585293 -99258563 + (TTCC)n Simple_repeat Simple_repeat 4 150 0 1 757 277 327 29 0 chr11 22585307 22585318 -99258538 - MTD LTR MaLR -196 183 173 1 757 596 126 107 0 chr11 22585318 22585421 -99258435 - PB1D9 SINE Alu -6 114 1 1 757 942 218 15 5 chr11 22585421 22585619 -99258237 - MTD LTR MaLR -219 200 1 1 757 1572 299 145 85 chr11 22585619 22586230 -99257626 + MTE-int LTR MaLR 289 913 -667 1 757 2963 65 58 82 chr11 22586230 22586717 -99257139 + IAPLTR2_Mm LTR ERVK 1 475 0 1 757 1572 299 145 85 chr11 22586717 22587273 -99256583 + MTE-int LTR MaLR 914 1527 -53 1 757 284 330 0 10 chr11 22587273 22587371 -99256485 + MLT1A LTR MaLR 1 97 -277 1 757 1018 217 65 114 chr11 22588535 22588920 -99254936 - RLTR9A LTR ERVK 0 368 3 1 757 7907 82 19 9 chr11 22589232 22591233 -99252623 - L1VL2 LINE L1 -1577 2038 18 1 757 460 107 0 118 chr11 22591258 22591343 -99252513 - RMER16-int LTR ERVK -2894 2512 2438 1 757 290 316 42 10 chr11 22591343 22591354 -99252502 - B4 SINE B4 -126 166 135 1 757 308 192 67 0 chr11 22591354 22591420 -99252436 - PB1D9 SINE Alu -77 70 1 1 757 290 316 42 10 chr11 22591420 22591439 -99252417 - B4 SINE B4 -126 134 68 1 757 234 0 0 0 chr11 22591447 22591473 -99252383 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 757 428 215 56 0 chr11 22591475 22591582 -99252274 - PB1D10 SINE Alu -2 115 3 1 757 24 67 0 0 chr11 22591599 22591644 -99252212 + AT_rich Low_complexity Low_complexity 1 45 0 1 757 1055 211 24 5 chr11 22591832 22592041 -99251815 - B3 SINE B2 -2 214 2 1 757 22 56 0 0 chr11 22592061 22592097 -99251759 + AT_rich Low_complexity Low_complexity 1 36 0 1 757 652 256 19 150 chr11 22592445 22592758 -99251098 - MLT1D LTR MaLR -231 274 3 1 757 283 303 0 0 chr11 22593116 22593192 -99250664 - MER20 DNA MER1_type -1 218 143 1 757 227 203 14 0 chr11 22594346 22594415 -99249441 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 757 6497 158 86 11 chr11 22595184 22596581 -99247275 - ORR1B2-int LTR MaLR -8 1501 1 1 757 797 155 164 7 chr11 22596581 22596819 -99247037 - ORR1B2 LTR MaLR 0 367 3 1 757 670 261 192 0 chr11 22597000 22597245 -99246611 + B4 SINE B4 1 292 0 1 757 622 147 25 6 chr11 22597245 22597403 -99246453 + (CA)n Simple_repeat Simple_repeat 1 161 0 1 757 256 227 0 0 chr11 22597439 22597483 -99246373 + ID4 SINE ID 11 54 -29 1 757 372 288 17 0 chr11 22597558 22597676 -99246180 + PB1D7 SINE Alu 1 120 0 1 757 601 271 0 0 chr11 22598064 22598197 -99245659 - B3A SINE B2 -65 133 1 1 757 275 269 15 0 chr11 22599110 22599177 -99244679 + MER45R DNA Tip100 1513 1580 -1 1 757 228 263 18 0 chr11 22599846 22599903 -99243953 + B1F SINE Alu 1 58 -91 1 757 3215 58 5 2 chr11 22600150 22600545 -99243311 - MTA_Mm LTR MaLR 0 396 1 1 757 7834 72 11 70 chr11 22600545 22601711 -99242145 - MTA_Mm-int LTR MaLR 0 1098 1 1 757 2579 55 65 0 chr11 22601713 22602038 -99241818 - MTA_Mm LTR MaLR 0 346 1 1 757 684 36 0 0 chr11 22602712 22602795 -99241061 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 757 2577 77 3 0 chr11 22603836 22604161 -99239695 - ORR1A2 LTR MaLR -1 326 1 1 757 1330 212 64 50 chr11 22604702 22604921 -99238935 - Lx6 LINE L1 0 7460 7231 1 757 2140 92 72 0 chr11 22604921 22605225 -99238631 - ORR1A2 LTR MaLR -1 326 1 1 757 1330 212 64 50 chr11 22605225 22605296 -99238560 - Lx6 LINE L1 -230 7230 7164 1 757 3231 41 36 3 chr11 22605296 22605683 -99238173 + MTB LTR MaLR 1 400 0 1 757 1330 212 64 50 chr11 22605683 22605734 -99238122 - Lx6 LINE L1 -297 7163 7113 1 757 297 171 0 0 chr11 22605734 22605822 -99238034 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 1 757 1669 204 84 8 chr11 22605839 22606195 -99237661 - Lx6 LINE L1 -335 7125 6743 1 757 1235 41 0 0 chr11 22606597 22606744 -99237112 + B1_Mus2 SINE Alu 1 147 0 1 757 183 42 0 0 chr11 22607230 22607254 -99236602 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 757 1193 21 0 14 chr11 22607255 22607398 -99236458 - B1_Mus2 SINE Alu -6 141 1 1 757 3038 51 3 0 chr11 22607423 22607795 -99236061 - L1_Mus1 LINE L1 -1 6566 6194 1 757 1211 243 113 74 chr11 22608066 22608604 -99235252 - RMER13A LTR ERVK -197 663 105 1 757 2597 163 0 0 chr11 22608881 22609262 -99234594 + SSU-rRNA_Hsa rRNA rRNA 1448 1828 -41 1 757 554 140 21 0 chr11 22609262 22609355 -99234501 + RMER17C-int LTR ERVK 3144 3238 0 1 757 1185 207 102 26 chr11 22609365 22609717 -99234139 + RMER17C LTR ERVK 3 381 -29 1 757 7365 206 97 81 chr11 22609734 22611320 -99232536 + RMER17C-int LTR ERVK 1 1603 -1635 1 757 423 0 0 0 chr11 22611320 22611367 -99232489 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 757 7365 206 97 81 chr11 22611367 22612071 -99231785 + RMER17C-int LTR ERVK 1604 2305 -933 1 757 1221 48 7 0 chr11 22612071 22612218 -99231638 + B1_Mus1 SINE Alu 1 148 0 1 757 6433 104 25 40 chr11 22612218 22612567 -99231289 + RMER17C-int LTR ERVK 2262 2584 -654 1 757 396 0 0 0 chr11 22614916 22614960 -99228896 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 757 431 211 0 0 chr11 22615484 22615560 -99228296 + MTC LTR MaLR 1 76 -345 2 757 700 233 20 7 chr11 22615561 22615708 -99228148 + B1_Mur4 SINE Alu 2 150 0 2 757 231 294 57 95 chr11 22615570 22615728 -99228128 + B4A SINE B4 94 245 -47 2 757 398 230 74 67 chr11 22615842 22615977 -99227879 + ORR1A3-int LTR MaLR 443 578 -1385 2 757 2829 123 56 30 chr11 22615896 22616483 -99227373 + RLTR25A LTR ERVK 442 1101 -2 2 757 235 299 124 0 chr11 22617343 22617440 -99226416 + LTR48 LTR ERV1 675 783 -4 2 757 1121 90 7 0 chr11 22617505 22617650 -99226206 - B1_Mus2 SINE Alu 0 147 2 2 757 735 111 42 25 chr11 22617991 22618111 -99225745 + B1_Mur4 SINE Alu 28 149 -1 2 757 349 186 0 0 chr11 22618128 22618187 -99225669 + B3 SINE B2 27 85 -131 2 757 1651 171 95 6 chr11 22618279 22618626 -99225230 + RLTR1B LTR ERV1 135 512 0 2 757 866 138 39 0 chr11 22618626 22618756 -99225100 + B3 SINE B2 82 216 0 2 757 540 246 169 0 chr11 22618768 22618898 -99224958 - B3 SINE B2 -64 152 1 2 757 268 268 114 18 chr11 22618952 22619066 -99224790 + Zaphod DNA Tip100 1187 1311 -2720 2 757 556 90 8 69 chr11 22620256 22620387 -99223469 + CT-rich Low_complexity Low_complexity 5 127 0 2 757 583 242 0 0 chr11 22620530 22620650 -99223206 + B1_Mur1 SINE Alu 30 149 0 2 757 323 292 117 91 chr11 22620667 22620749 -99223107 - L2a LINE L2 0 3426 3357 2 757 1019 140 42 21 chr11 22620749 22620939 -99222917 + B2_Mm2 SINE B2 2 195 0 2 757 323 292 117 91 chr11 22620939 22621086 -99222770 - L2a LINE L2 -70 3356 3191 2 757 1017 302 105 44 chr11 22621146 22621641 -99222215 + MER34A1 LTR ERV1 63 587 0 2 757 1166 226 48 115 chr11 22621786 22622186 -99221670 - MTEb LTR MaLR -6 373 1 2 757 271 171 293 0 chr11 22622189 22622271 -99221585 - MTEb-int LTR MaLR -3 1577 1472 2 757 327 250 52 13 chr11 22622268 22622345 -99221511 - MTEb-int LTR MaLR -450 1130 1051 2 757 274 345 47 23 chr11 22622442 22622528 -99221328 - L1MD2 LINE L1 -380 5979 5894 2 757 1364 210 311 32 chr11 22622528 22622971 -99220885 + RMER2 LTR ERV1 1 567 0 2 757 274 345 47 23 chr11 22622971 22623056 -99220800 - L1MD2 LINE L1 -466 5893 5804 2 757 247 243 99 14 chr11 22623214 22623285 -99220571 - RSINE1 SINE B4 -10 155 79 2 757 214 143 60 20 chr11 22623302 22623352 -99220504 + PB1 SINE Alu 67 118 -9 2 757 1703 158 115 30 chr11 22623443 22623781 -99220075 - ORR1B2 LTR MaLR 0 367 1 2 757 367 255 16 0 chr11 22623792 22623894 -99219962 - L1_Rod LINE L1 -706 5473 5323 2 757 1155 52 0 0 chr11 22624610 22624745 -99219111 + B1_Mus1 SINE Alu 1 135 -13 2 757 204 40 0 0 chr11 22624745 22624770 -99219086 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 757 663 103 0 0 chr11 22624788 22624885 -99218971 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 2 757 435 194 0 0 chr11 22625631 22625724 -99218132 + T-rich Low_complexity Low_complexity 1 93 0 2 757 410 273 45 8 chr11 22626220 22626353 -99217503 - RMER15 LTR ERVL -45 530 393 2 757 1539 279 127 82 chr11 22626696 22627697 -99216159 - RMER15-int LTR ERVL -26 4973 3928 2 757 317 211 0 0 chr11 22627697 22627749 -99216107 - PB1D9 SINE Alu -68 52 1 2 757 250 342 0 0 chr11 22627756 22627835 -99216021 - RMER15-int LTR ERVL -1737 3262 3184 2 757 1615 216 32 19 chr11 22627837 22628206 -99215650 - ORR1D1 LTR MaLR 0 374 1 2 757 1003 122 0 30 chr11 22628381 22628550 -99215306 + L1_Mus1 LINE L1 6403 6566 -1 2 757 2465 138 24 17 chr11 22628920 22629334 -99214522 + MTC LTR MaLR 1 417 -4 2 757 1460 320 40 13 chr11 22629334 22629805 -99214051 - RMER15-int LTR ERVL -2334 2665 2182 2 757 312 251 84 19 chr11 22629876 22630032 -99213824 - RMER15-int LTR ERVL -3265 2492 2349 2 757 1820 236 72 77 chr11 22630239 22630604 -99213252 - RMER19C LTR ERVK 0 611 221 2 757 7333 57 10 0 chr11 22630604 22631488 -99212368 + RLTR13B1 LTR ERVK 1 893 0 2 757 1820 151 9 136 chr11 22631488 22631755 -99212101 - RMER19C LTR ERVK -332 279 43 2 757 1272 103 21 21 chr11 22631755 22631944 -99211912 + B2_Mm2 SINE B2 4 192 -3 2 757 1405 143 3 142 chr11 22631944 22632016 -99211840 - RMER19C LTR ERVK -534 77 7 2 757 1446 170 144 73 chr11 22632295 22632650 -99211206 - ORR1C2 LTR MaLR 0 384 5 2 757 2094 289 115 32 chr11 22632833 22633677 -99210179 - RMER15-int LTR ERVL -3374 1625 712 2 757 634 225 133 58 chr11 22633678 22633968 -99209888 + RLTR16 LTR ERVK 6 308 -260 2 757 333 0 0 0 chr11 22634379 22634416 -99209440 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 757 859 319 25 0 chr11 22634470 22634752 -99209104 - RMER15-int LTR ERVL -4496 503 215 2 757 377 311 81 7 chr11 22634955 22635104 -99208752 - RMER15 LTR ERVL -5 570 411 2 757 555 303 137 55 chr11 22636148 22636476 -99207380 + ORR1E LTR MaLR 1 355 -4 2 757 240 281 91 58 chr11 22636816 22636937 -99206919 - RLTR40 LTR ERVK -172 645 521 2 757 277 311 104 15 chr11 22636994 22637128 -99206728 - ORR1D2 LTR MaLR -214 156 11 2 757 286 302 93 0 chr11 22637187 22637273 -99206583 + RSINE1 SINE B4 44 137 -28 2 757 876 200 0 7 chr11 22637453 22637599 -99206257 + B1_Mur4 SINE Alu 1 145 -5 2 757 392 70 0 109 chr11 22638078 22638142 -99205714 - MTE2b LTR MaLR 0 421 365 2 757 3221 148 64 6 chr11 22638140 22638184 -99205672 + RLTR17 LTR ERVK 127 170 -522 2 757 1136 75 6 0 chr11 22638184 22638357 -99205499 + (GGA)n Simple_repeat Simple_repeat 2 175 0 2 757 3221 148 64 6 chr11 22638357 22638847 -99205009 + RLTR17 LTR ERVK 171 691 -1 2 757 756 210 37 6 chr11 22638848 22639011 -99204845 - MTE2b LTR MaLR -211 168 1 2 757 180 0 0 0 chr11 22639036 22639056 -99204800 + (G)n Simple_repeat Simple_repeat 1 20 0 2 757 1126 253 31 0 chr11 22639339 22639596 -99204260 + MLT1A0 LTR MaLR 101 365 0 2 757 229 226 48 0 chr11 22639997 22640059 -99203797 - RMER15 LTR ERVL -92 483 419 2 757 937 254 20 24 chr11 22640443 22640693 -99203163 + RLTR16 LTR ERVK 1 249 -256 2 757 233 251 130 105 chr11 22641787 22641987 -99201869 - MER34A1 LTR ERV1 -6 781 384 2 757 308 317 166 24 chr11 22642032 22642343 -99201513 - LTR48B LTR ERV1 -334 453 20 2 757 738 220 72 81 chr11 22642706 22642938 -99200918 + B4 SINE B4 72 292 0 2 757 253 324 17 67 chr11 22642970 22643089 -99200767 - RLTR25B LTR ERVK -475 553 441 2 757 690 192 17 0 chr11 22642983 22643103 -99200753 - B1_Mur4 SINE Alu -2 148 27 2 757 226 154 0 0 chr11 22643116 22643155 -99200701 + RMER12B LTR ERVK 1189 1227 -177 2 757 24 32 0 0 chr11 22643155 22643186 -99200670 + AT_rich Low_complexity Low_complexity 1 31 0 2 757 363 279 21 31 chr11 22643239 22643365 -99200491 - PB1 SINE Alu -195 119 2 2 757 306 0 0 0 chr11 22643377 22643411 -99200445 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 757 292 313 24 0 chr11 22643422 22643505 -99200351 + PB1D10 SINE Alu 12 96 -21 2 757 284 299 20 130 chr11 22643782 22643928 -99199928 - B4A SINE B4 -81 211 82 2 757 385 246 48 61 chr11 22643931 22644078 -99199778 - B1_Mur2 SINE Alu 0 149 5 2 757 322 250 103 88 chr11 22644195 22644331 -99199525 - MLT1A0 LTR MaLR -24 341 204 2 757 1091 223 10 0 chr11 22644598 22644800 -99199056 + B3 SINE B2 4 207 -9 2 757 222 37 0 0 chr11 22644834 22644861 -99198995 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 2 757 723 142 165 0 chr11 22644865 22644992 -99198864 - B1_Mus1 SINE Alu 0 148 1 2 757 21 36 0 0 chr11 22644994 22645022 -99198834 + AT_rich Low_complexity Low_complexity 1 28 0 2 757 540 134 0 118 chr11 22645065 22645175 -99198681 - B1_Mur2 SINE Alu -1 148 52 2 757 503 243 179 0 chr11 22645202 22645342 -99198514 - RSINE1 SINE B4 0 165 1 2 757 489 256 85 76 chr11 22645428 22645639 -99198217 + MLT1D LTR MaLR 9 221 -284 2 757 270 173 58 0 chr11 22645687 22645739 -99198117 + MLT1D LTR MaLR 340 394 -111 2 757 417 39 0 0 chr11 22645739 22645790 -99198066 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 757 308 301 75 80 chr11 22646086 22646172 -99197684 - RLTR16 LTR ERVK -262 243 161 2 757 2908 120 26 44 chr11 22646172 22646626 -99197230 - RLTR41 LTR ERV1 0 446 1 2 757 308 302 81 76 chr11 22646626 22646787 -99197069 - RLTR16 LTR ERVK -335 216 32 2 757 296 206 31 16 chr11 22647261 22647325 -99196531 + MLT1D LTR MaLR 433 497 -8 2 757 2503 89 53 5 chr11 22647401 22647775 -99196081 - RLTR9E LTR ERVK -17 392 1 2 757 267 237 143 10 chr11 22648564 22648662 -99195194 + MLT1I LTR MaLR 299 409 -2 2 757 1534 226 129 79 chr11 22648720 22648877 -99194979 + MT2B LTR ERVL 1 222 -379 2 757 880 139 21 0 chr11 22648877 22649021 -99194835 - B1_Mus1 SINE Alu -1 147 1 2 757 1534 226 129 79 chr11 22649021 22649435 -99194421 + MT2B LTR ERVL 223 601 0 2 757 589 189 12 0 chr11 22649707 22649876 -99193980 + (CA)n Simple_repeat Simple_repeat 2 172 0 2 757 753 240 58 0 chr11 22649927 22650081 -99193775 - RSINE1 SINE B4 -1 164 2 2 757 198 0 0 0 chr11 22650082 22650104 -99193752 + (CCA)n Simple_repeat Simple_repeat 3 24 0 2 757 2312 72 19 0 chr11 22650191 22650511 -99193345 - IAPEY2_LTR LTR ERVK 0 357 32 2 757 444 264 7 116 chr11 22650601 22650666 -99193190 + B1F SINE Alu 5 63 -86 2 757 5182 48 0 0 chr11 22650666 22651288 -99192568 + L1Md_F2 LINE L1 5961 6582 0 2 757 444 264 7 116 chr11 22651288 22651368 -99192488 + B1F SINE Alu 64 134 -15 2 757 383 164 0 15 chr11 22651795 22651863 -99191993 + MLT1G1 LTR MaLR 511 577 -2 2 757 535 314 21 14 chr11 22652066 22652208 -99191648 - RSINE1 SINE B4 -22 143 1 2 757 412 233 76 17 chr11 22653189 22653307 -99190549 + RSINE1 SINE B4 20 144 -21 2 757 297 0 0 0 chr11 22653308 22653341 -99190515 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 757 445 252 146 0 chr11 22653518 22653621 -99190235 + B1F SINE Alu 32 149 0 2 757 468 204 159 77 chr11 22654165 22654335 -99189521 - ORR1D2 LTR MaLR 0 370 187 2 757 618 14 0 0 chr11 22654587 22654658 -99189198 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 757 890 243 50 0 chr11 22654659 22654840 -99189016 - B3 SINE B2 -23 193 4 2 757 255 338 36 0 chr11 22655023 22655162 -99188694 + L1M6 LINE L1 1465 1608 -4888 2 757 711 206 36 14 chr11 22655380 22655518 -99188338 - B1_Mur3 SINE Alu -8 141 1 2 757 22 35 0 0 chr11 22655878 22655907 -99187949 + AT_rich Low_complexity Low_complexity 1 29 0 2 757 271 269 51 0 chr11 22655924 22656002 -99187854 + B1F1 SINE Alu 4 85 -64 2 757 241 352 88 6 chr11 22656029 22656189 -99187667 + MIR SINE MIR 40 212 -50 2 757 613 241 150 31 chr11 22656221 22656270 -99187586 - ID_B1 SINE B4 -7 217 169 2 757 1947 149 149 0 chr11 22656270 22656599 -99187257 - ORR1C1 LTR MaLR 0 378 1 2 757 613 241 150 31 chr11 22656599 22656742 -99187114 - ID_B1 SINE B4 -56 168 2 2 757 215 250 21 0 chr11 22656933 22656981 -99186875 + ID4_ SINE ID 3 51 -32 3 757 361 305 193 10 chr11 22657070 22657262 -99186594 - MT2A LTR ERVL 0 533 307 3 757 355 276 179 71 chr11 22657338 22657506 -99186350 - ORR1D2 LTR MaLR -190 189 4 2 757 277 245 143 41 chr11 22657649 22657747 -99186109 + PB1D10 SINE Alu 1 108 -9 3 757 285 29 0 0 chr11 22657748 22657782 -99186074 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 757 498 216 312 12 chr11 22657865 22658035 -99185821 - MTD LTR MaLR -129 290 70 3 757 736 116 0 30 chr11 22658043 22658176 -99185680 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 3 757 1300 20 0 0 chr11 22660085 22660232 -99183624 - B1_Mm SINE Alu 0 147 1 3 757 415 177 0 102 chr11 22660234 22660322 -99183534 - MTD LTR MaLR -342 79 1 3 757 288 294 108 34 chr11 22660347 22660523 -99183333 - MIR SINE MIR -59 203 15 3 757 373 211 102 31 chr11 22660540 22660638 -99183218 - PB1D10 SINE Alu 0 117 13 3 757 228 333 75 19 chr11 22660775 22660882 -99182974 + ID_B1 SINE B4 24 136 -88 3 757 369 0 0 0 chr11 22661277 22661318 -99182538 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 757 248 197 16 32 chr11 22661420 22661483 -99182373 + B1F1 SINE Alu 88 149 0 3 757 228 295 30 90 chr11 22661516 22661650 -99182206 - MER2 DNA MER2_type -99 246 121 3 757 372 206 14 0 chr11 22661664 22661737 -99182119 + B3 SINE B2 42 115 -101 3 757 314 324 123 11 chr11 22661761 22661948 -99181908 + L1MD LINE L1 2993 3200 -2946 3 757 612 73 0 0 chr11 22661950 22662032 -99181824 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 3 757 234 250 274 0 chr11 22663769 22663853 -99180003 + PB1D10 SINE Alu 2 108 -9 3 757 24 32 0 0 chr11 22663947 22663978 -99179878 + AT_rich Low_complexity Low_complexity 1 31 0 3 757 843 90 0 0 chr11 22664754 22664876 -99178980 + (TATG)n Simple_repeat Simple_repeat 1 122 0 3 757 393 205 0 0 chr11 22664884 22665011 -99178845 + (TG)n Simple_repeat Simple_repeat 2 128 0 3 757 621 212 0 0 chr11 22665024 22665203 -99178653 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 757 667 228 31 0 chr11 22665888 22666015 -99177841 + B1_Mur2 SINE Alu 5 135 -14 3 757 362 234 60 4 chr11 22666029 22666124 -99177732 + B1F SINE Alu 13 109 -11 3 757 351 0 0 0 chr11 22666681 22666720 -99177136 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 757 204 136 68 0 chr11 22666721 22666780 -99177076 + GA-rich Low_complexity Low_complexity 2 64 0 3 757 455 250 173 0 chr11 22666996 22667152 -99176704 - B3A SINE B2 -14 184 2 3 757 189 0 0 0 chr11 22667210 22667231 -99176625 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 757 447 73 0 5 chr11 22667245 22667310 -99176546 - B2_Mm2 SINE B2 -107 109 47 3 757 1195 104 40 0 chr11 22667338 22667511 -99176345 - B2_Mm2 SINE B2 -14 181 2 3 757 748 266 128 0 chr11 22667530 22667756 -99176100 - Charlie12 DNA MER1_type -1544 1329 1075 3 757 613 186 10 0 chr11 22667756 22667858 -99175998 + B3 SINE B2 1 103 -113 3 757 216 0 0 0 chr11 22667868 22667892 -99175964 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 757 28 0 0 0 chr11 22667910 22667938 -99175918 + AT_rich Low_complexity Low_complexity 1 28 0 3 757 448 246 269 54 chr11 22667959 22668256 -99175600 - Charlie12 DNA MER1_type -1809 1064 704 3 757 34399 65 3 10 chr11 22668260 22673241 -99170615 + L1Md_F2 LINE L1 640 5586 -297 3 757 8254 47 1 0 chr11 22673242 22674223 -99169633 + L1Md_F2 LINE L1 5588 6569 -13 3 757 25 31 0 0 chr11 22674223 22674255 -99169601 + AT_rich Low_complexity Low_complexity 1 32 0 3 757 575 304 18 30 chr11 22674620 22674786 -99169070 + RMER30 DNA MER1_type 24 187 -15 3 757 346 300 11 11 chr11 22674799 22674890 -99168966 + Tigger5 DNA MER2_type 2316 2406 0 3 757 377 257 37 0 chr11 22674939 22675048 -99168808 + ID_B1 SINE B4 112 224 0 3 758 1218 48 7 0 chr11 22675900 22676046 -99167810 + B1_Mus2 SINE Alu 1 147 0 3 758 209 111 21 43 chr11 22676050 22676097 -99167759 + A-rich Low_complexity Low_complexity 2 47 0 3 758 624 116 0 0 chr11 22676287 22676382 -99167474 + (TTCTCC)n Simple_repeat Simple_repeat 3 97 0 3 758 1408 80 27 0 chr11 22676384 22676572 -99167284 - B2_Mm1a SINE B2 0 193 1 3 758 412 299 56 81 chr11 22676581 22676741 -99167115 + B4 SINE B4 65 220 -72 3 758 852 186 0 0 chr11 22676607 22676747 -99167109 + B1_Mur2 SINE Alu 10 149 0 3 758 538 291 14 0 chr11 22677172 22677313 -99166543 + ID_B1 SINE B4 82 224 0 3 758 235 247 67 107 chr11 22677393 22677516 -99166340 + MIRc SINE MIR 19 133 -129 3 758 392 100 229 0 chr11 22677528 22677598 -99166258 - B1_Mur3 SINE Alu -37 112 27 3 758 731 231 53 42 chr11 22677621 22677811 -99166045 - B3 SINE B2 0 216 25 3 758 399 224 128 8 chr11 22677855 22677972 -99165884 - B1F1 SINE Alu -16 133 3 3 758 371 263 0 0 chr11 22678001 22678077 -99165779 - ID2 SINE ID -4 79 4 3 758 249 288 16 48 chr11 22678509 22678633 -99165223 + CT-rich Low_complexity Low_complexity 1 120 0 3 758 280 244 105 0 chr11 22678662 22678748 -99165108 + B1_Mm SINE Alu 1 95 -52 3 758 993 248 5 0 chr11 22678789 22678999 -99164857 + B3 SINE B2 2 212 -4 3 758 572 194 44 58 chr11 22680466 22680603 -99163253 + B1_Mus1 SINE Alu 2 136 -12 3 758 531 0 0 0 chr11 22680603 22680662 -99163194 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 758 572 188 129 30 chr11 22681467 22681586 -99162270 + B1_Mus2 SINE Alu 2 133 -14 3 758 477 0 0 0 chr11 22681586 22681639 -99162217 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 3 758 572 188 129 30 chr11 22681639 22681651 -99162205 + B1_Mus2 SINE Alu 134 145 -2 3 758 1009 101 0 7 chr11 22682096 22682235 -99161621 + B2_Mm2 SINE B2 2 139 -56 3 758 353 22 0 21 chr11 22682235 22682282 -99161574 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 758 243 0 0 0 chr11 22682282 22682308 -99161548 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3 758 632 172 54 27 chr11 22682418 22682567 -99161289 - RMER17C-int LTR ERVK -1601 1637 1485 3 758 1790 184 286 62 chr11 22683356 22683919 -99159937 - RMER17C-int LTR ERVK -2550 688 1 3 758 2084 128 50 20 chr11 22683919 22684317 -99159539 - RMER17C LTR ERVK 0 410 1 3 758 345 200 29 0 chr11 22684318 22684388 -99159468 + B3 SINE B2 140 211 -5 3 758 267 246 0 47 chr11 22684476 22684540 -99159316 + RSINE1 SINE B4 76 136 -29 3 758 304 206 74 32 chr11 22685009 22685104 -99158752 - L1MB3 LINE L1 -54 6129 6031 3 758 2038 131 192 14 chr11 22685190 22685555 -99158301 + RLTR23 LTR ERV1 1 430 0 3 758 416 314 56 34 chr11 22686512 22686746 -99157110 + MURVY-int LTR ERV1 1156 1394 -6058 3 758 418 304 29 15 chr11 22687625 22687762 -99156094 + MMERGLN-int LTR ERV1 2987 3125 -4431 3 758 891 227 53 68 chr11 22687804 22688069 -99155787 - RLTR9A LTR ERVK 0 368 108 3 758 1035 348 37 35 chr11 22688186 22688835 -99155021 + MMERGLN-int LTR ERV1 3225 3874 -3682 3 758 2265 68 9 61 chr11 22689654 22689982 -99153874 - ORR1A2 LTR MaLR 0 327 17 3 758 432 100 0 0 chr11 22689992 22690052 -99153804 + ORR1C2 LTR MaLR 22 81 -303 3 758 1303 183 31 4 chr11 22690052 22690277 -99153579 - RLTR18 LTR ERVK 0 616 386 3 758 24 0 0 0 chr11 22690277 22690301 -99153555 + AT_rich Low_complexity Low_complexity 1 24 0 3 758 1175 97 0 39 chr11 22690301 22690483 -99153373 + RLTR23 LTR ERV1 240 414 -16 3 758 239 290 52 41 chr11 22690483 22690580 -99153276 + MIRb SINE MIR 28 125 -143 3 758 262 296 50 20 chr11 22691027 22691127 -99152729 + MLT1A1 LTR MaLR 305 407 -1 3 758 287 146 0 18 chr11 22691413 22691469 -99152387 + GA-rich Low_complexity Low_complexity 1 55 0 3 758 1196 62 11 17 chr11 22691470 22691651 -99152205 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 758 493 204 145 109 chr11 22691757 22692005 -99151851 + RMER20B LTR ERVK 98 354 -273 3 758 535 312 75 9 chr11 22692214 22692440 -99151416 - L1MB7 LINE L1 -210 5974 5734 3 758 481 259 35 0 chr11 22692467 22692583 -99151273 - PB1D7 SINE Alu 0 120 1 3 758 340 250 0 0 chr11 22692691 22692759 -99151097 - ID_B1 SINE B4 -55 169 102 3 758 21 36 0 0 chr11 22692908 22692936 -99150920 + AT_rich Low_complexity Low_complexity 1 28 0 3 758 977 146 202 0 chr11 22692939 22693117 -99150739 - B3 SINE B2 0 216 3 3 758 386 233 48 0 chr11 22693124 22693227 -99150629 - L1MB7 LINE L1 -738 5436 5329 3 758 26 0 0 0 chr11 22693246 22693272 -99150584 + AT_rich Low_complexity Low_complexity 1 26 0 3 758 433 299 34 14 chr11 22693292 22693438 -99150418 - RSINE1 SINE B4 -16 149 1 3 758 697 242 0 0 chr11 22693557 22693685 -99150171 + ID_B1 SINE B4 86 213 -11 3 758 237 333 7 72 chr11 22693573 22693712 -99150144 - YREP_Mm Unknown Unknown -1516 296 167 3 758 661 239 227 0 chr11 22694533 22694709 -99149147 + B3 SINE B2 1 216 0 3 758 2075 91 137 6 chr11 22694815 22695136 -99148720 + ORR1B2 LTR MaLR 1 363 -4 3 758 462 36 0 0 chr11 22696735 22696791 -99147065 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 758 2554 176 67 33 chr11 22696829 22697369 -99146487 + RLTR20B2 LTR ERVK 1 558 -2 3 758 210 179 0 25 chr11 22697430 22697470 -99146386 + (CAT)n Simple_repeat Simple_repeat 3 41 0 3 758 655 179 146 0 chr11 22697470 22697593 -99146263 - B1_Mur1 SINE Alu -8 141 1 3 758 660 212 8 8 chr11 22697603 22697722 -99146134 - B1_Mur1 SINE Alu -8 141 23 3 758 343 275 68 109 chr11 22697722 22697750 -99146106 - B4 SINE B4 -74 218 78 3 758 428 20 102 0 chr11 22697778 22697876 -99145980 + (TA)n Simple_repeat Simple_repeat 1 108 0 3 758 306 0 0 0 chr11 22697876 22697909 -99145947 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 758 1282 180 72 17 chr11 22698451 22698917 -99144939 - RMER10B LTR ERVL -16 426 32 3 758 868 85 0 8 chr11 22699100 22699219 -99144637 + RMER10B LTR ERVL 5 122 -276 3 758 824 174 0 7 chr11 22699237 22699382 -99144474 + RMER10B LTR ERVL 255 398 0 3 758 3333 64 0 10 chr11 22701083 22701493 -99142363 - MTB_Mm LTR MaLR -1 406 1 3 758 6750 104 21 82 chr11 22701493 22702662 -99141194 - MTB_Mm-int LTR MaLR 0 1098 1 3 758 3314 58 0 2 chr11 22702662 22703059 -99140797 - MTB_Mm LTR MaLR 0 396 1 3 758 416 78 0 30 chr11 22703059 22703125 -99140731 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 3 758 255 61 0 0 chr11 22703125 22703158 -99140698 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 758 494 90 0 37 chr11 22703188 22703269 -99140587 + MTB_Mm LTR MaLR 197 274 -133 4 758 1180 98 81 0 chr11 22703321 22703494 -99140362 - B2_Mm2 SINE B2 -7 188 2 4 758 1483 66 0 35 chr11 22703494 22703697 -99140159 - MTB LTR MaLR -204 196 1 4 758 470 258 0 0 chr11 22703711 22703804 -99140052 - ID_B1 SINE B4 -38 186 94 4 758 277 360 30 10 chr11 22703715 22703816 -99140040 - B1_Mur4 SINE Alu -45 105 3 4 758 606 281 179 62 chr11 22703876 22704100 -99139756 - B4 SINE B4 0 292 43 4 758 192 40 0 0 chr11 22704243 22704268 -99139588 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 758 303 322 40 20 chr11 22704333 22704485 -99139371 + LTR37B LTR ERV1 8 162 -306 4 758 392 159 29 0 chr11 22704506 22704575 -99139281 - PB1D10 SINE Alu -29 88 18 4 758 2482 109 22 8 chr11 22705104 22705466 -99138390 - ORR1B2 LTR MaLR 0 367 1 4 758 1420 81 0 21 chr11 22705518 22705708 -99138148 + B2_Mm2 SINE B2 2 187 -8 4 758 197 0 71 0 chr11 22705709 22705737 -99138119 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 758 514 308 177 31 chr11 22705904 22706255 -99137601 - MMERGLN-int LTR ERV1 -3134 4422 4021 4 758 1248 318 58 47 chr11 22706625 22707555 -99136301 - MMERGLN-int LTR ERV1 -3688 3868 2051 4 758 1664 134 0 107 chr11 22707555 22707873 -99135983 - RLTR23 LTR ERV1 -146 284 1 4 758 543 327 33 14 chr11 22707880 22708094 -99135762 - RMER15 LTR ERVL -3 572 355 4 758 369 0 0 0 chr11 22708583 22708624 -99135232 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 758 583 210 79 14 chr11 22709201 22709341 -99134515 + B1_Mur1 SINE Alu 1 149 0 4 758 322 250 150 38 chr11 22709348 22709481 -99134375 + B1F1 SINE Alu 1 148 -1 4 758 369 313 130 25 chr11 22710434 22710634 -99133222 + MER21B LTR ERV1 491 711 -152 4 758 366 262 9 0 chr11 22710643 22710734 -99133122 + ID4 SINE ID 6 99 -53 4 758 320 156 10 17 chr11 22710776 22710849 -99133007 + PB1D10 SINE Alu 25 99 -50 4 758 417 39 0 0 chr11 22711904 22711955 -99131901 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 758 369 93 0 0 chr11 22711955 22712008 -99131848 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 758 480 287 0 24 chr11 22712039 22712164 -99131692 - ID_B1 SINE B4 -19 205 84 4 758 2551 152 92 15 chr11 22712175 22712643 -99131213 - RLTR16 LTR ERVK -1 504 1 4 758 596 298 47 26 chr11 22712938 22713131 -99130725 - B3A SINE B2 0 198 2 4 758 1150 168 138 4 chr11 22713181 22713450 -99130406 - Lx9 LINE L1 -42 7602 7298 4 758 331 297 19 29 chr11 22714741 22714845 -99129011 - PB1D10 SINE Alu -8 109 7 4 758 569 40 0 13 chr11 22714873 22714950 -99128906 + (TCC)n Simple_repeat Simple_repeat 2 77 0 4 758 550 214 10 0 chr11 22714962 22715065 -99128791 - B1_Mur2 SINE Alu -2 147 44 4 758 622 196 200 11 chr11 22715078 22715253 -99128603 + B3 SINE B2 2 209 -7 4 758 1217 264 62 59 chr11 22715286 22715456 -99128400 - MTE2b LTR MaLR -40 339 179 4 758 893 216 87 5 chr11 22715456 22715651 -99128205 - B3 SINE B2 -5 211 1 4 758 1217 264 62 59 chr11 22715651 22715818 -99128038 - MTE2b LTR MaLR -201 178 1 4 758 469 277 164 0 chr11 22717195 22717372 -99126484 - B4A SINE B4 -78 214 9 4 758 327 78 0 0 chr11 22717666 22717717 -99126139 + (TATG)n Simple_repeat Simple_repeat 1 51 0 4 758 470 261 53 97 chr11 22717939 22718105 -99125751 + B1F SINE Alu 1 149 0 4 758 365 256 35 0 chr11 22718141 22718227 -99125629 - ORR1D2 LTR MaLR -5 365 277 4 758 305 214 41 74 chr11 22718235 22718356 -99125500 + Lx2B LINE L1 6883 6999 -1 4 758 528 242 140 21 chr11 22718691 22718877 -99124979 - B3 SINE B2 -5 211 4 4 758 22 0 0 0 chr11 22718877 22718899 -99124957 + GC_rich Low_complexity Low_complexity 1 22 0 4 758 901 294 43 3 chr11 22718964 22719264 -99124592 - L1MC3 LINE L1 -164 7621 7310 4 758 489 34 0 0 chr11 22719278 22719337 -99124519 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 4 758 348 64 0 0 chr11 22719471 22719518 -99124338 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 4 758 527 202 172 70 chr11 22719518 22719646 -99124210 - B1_Mus2 SINE Alu 0 147 7 4 758 787 254 25 64 chr11 22719676 22719863 -99123993 + B3 SINE B2 25 214 -2 4 758 296 254 29 15 chr11 22720013 22720081 -99123775 - PB1 SINE Alu -15 112 44 4 758 396 340 75 20 chr11 22720297 22720444 -99123412 + RSINE1 SINE B4 1 155 -10 4 758 21 36 0 0 chr11 22720608 22720636 -99123220 + AT_rich Low_complexity Low_complexity 1 28 0 4 758 330 26 0 0 chr11 22720638 22720677 -99123179 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 758 192 91 0 0 chr11 22720677 22720701 -99123155 + (CAGAGA)n Simple_repeat Simple_repeat 4 27 0 4 758 345 47 0 0 chr11 22720701 22720744 -99123112 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 758 192 91 0 0 chr11 22720744 22720752 -99123104 + (CAGAGA)n Simple_repeat Simple_repeat 4 11 0 4 758 328 259 147 0 chr11 22720752 22720868 -99122988 - B3A SINE B2 -19 179 47 4 758 294 240 225 0 chr11 22721908 22722077 -99121779 - B4 SINE B4 -4 288 1 4 758 195 42 0 0 chr11 22722279 22722303 -99121553 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 4 758 301 347 96 5 chr11 22722514 22722734 -99121122 - Arthur1 DNA Tip100 -394 3553 3314 4 758 189 0 0 0 chr11 22722902 22722923 -99120933 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 4 758 191 254 66 33 chr11 22723215 22723276 -99120580 + L2 LINE L2 74 136 -3283 4 758 982 270 102 68 chr11 22724561 22725005 -99118851 - RLTR26 LTR ERVK -111 516 1 4 758 1258 41 0 0 chr11 22725111 22725258 -99118598 + B1_Mus2 SINE Alu 1 147 0 4 758 333 0 0 0 chr11 22725504 22725541 -99118315 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 758 477 90 0 0 chr11 22725571 22725638 -99118218 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 758 688 216 135 16 chr11 22725658 22725851 -99118005 - B3 SINE B2 0 216 1 4 758 535 239 219 19 chr11 22726052 22726317 -99117539 - MTE-int LTR MaLR -3 1577 1260 4 758 2758 19 0 0 chr11 22726332 22726657 -99117199 + IAPEY2_LTR LTR ERVK 33 357 0 4 758 512 337 165 21 chr11 22726683 22726974 -99116882 - MTE-int LTR MaLR -403 1177 845 4 758 269 252 62 80 chr11 22728200 22728312 -99115544 - PB1D10 SINE Alu -6 111 2 4 758 379 237 194 15 chr11 22728669 22728870 -99114986 + L1MC4a LINE L1 7399 7635 -247 4 758 24 0 0 0 chr11 22729060 22729084 -99114772 + AT_rich Low_complexity Low_complexity 1 24 0 4 758 714 256 45 6 chr11 22729089 22729266 -99114590 + B3 SINE B2 4 187 -29 4 758 827 183 0 6 chr11 22729303 22729484 -99114372 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 758 187 197 66 0 chr11 22729470 22729531 -99114325 + (CATG)n Simple_repeat Simple_repeat 3 67 0 4 758 382 227 175 160 chr11 22729552 22729595 -99114261 + B3A SINE B2 2 42 -156 4 758 635 311 9 32 chr11 22729595 22729814 -99114042 + B3 SINE B2 3 216 0 4 758 382 227 175 160 chr11 22729814 22729964 -99113892 + B3A SINE B2 43 198 0 4 758 266 196 0 0 chr11 22730141 22730187 -99113669 - PB1D7 SINE Alu -2 118 73 4 758 447 68 0 0 chr11 22731585 22731644 -99112212 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 4 758 180 77 0 0 chr11 22731688 22731714 -99112142 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 758 1004 68 0 0 chr11 22731714 22731847 -99112009 - B1_Mm SINE Alu -7 140 8 4 758 227 277 42 0 chr11 22731747 22731866 -99111990 - ORR1B1-int LTR MaLR -755 754 631 4 758 209 195 0 0 chr11 22732654 22732695 -99111161 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 758 943 104 7 34 chr11 22732862 22733011 -99110845 + B1_Mus2 SINE Alu 3 147 0 4 758 704 260 9 33 chr11 22733479 22733690 -99110166 - ID_B1 SINE B4 -14 210 5 4 758 501 208 21 78 chr11 22734404 22734545 -99109311 + B1_Mur2 SINE Alu 17 149 0 4 758 291 116 261 0 chr11 22734987 22735056 -99108800 + Lx8 LINE L1 7387 7473 0 4 758 270 207 0 0 chr11 22735677 22735735 -99108121 + (CATA)n Simple_repeat Simple_repeat 3 60 0 4 758 229 345 25 76 chr11 22737235 22737256 -99106600 + MT2B LTR ERVL 144 158 -443 4 758 500 211 43 60 chr11 22737256 22737372 -99106484 + PB1D9 SINE Alu 2 115 -5 4 758 869 256 14 28 chr11 22738070 22738287 -99105569 + B3 SINE B2 3 216 0 4 758 401 270 43 0 chr11 22738481 22738596 -99105260 + ID_B1 SINE B4 103 222 -2 4 758 261 98 0 0 chr11 22738930 22738971 -99104885 + (A)n Simple_repeat Simple_repeat 1 41 0 4 758 185 65 32 0 chr11 22739172 22739203 -99104653 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 758 514 286 0 23 chr11 22739203 22739332 -99104524 - ID_B1 SINE B4 -13 211 86 4 758 880 213 69 5 chr11 22739393 22739596 -99104260 - B3 SINE B2 0 216 1 4 758 245 278 115 44 chr11 22739653 22739766 -99104090 + B4 SINE B4 15 135 -157 4 758 234 0 0 0 chr11 22740149 22740175 -99103681 + (CAGAA)n Simple_repeat Simple_repeat 5 30 0 4 758 415 244 199 12 chr11 22740390 22740483 -99103373 - B3 SINE B2 -19 197 80 4 758 1290 87 11 26 chr11 22740483 22740672 -99103184 + B2_Mm1a SINE B2 1 186 -7 4 758 415 244 199 12 chr11 22740672 22740744 -99103112 - B3 SINE B2 -137 79 2 4 758 185 120 0 0 chr11 22741571 22741596 -99102260 + L4 LINE RTE 914 938 -1091 4 758 1287 83 0 0 chr11 22741773 22742086 -99101770 + (CA)n Simple_repeat Simple_repeat 1 313 0 4 758 569 111 192 0 chr11 22742086 22742185 -99101671 - B1_Mus1 SINE Alu -22 126 9 4 758 216 0 0 0 chr11 22742233 22742257 -99101599 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 758 223 242 30 0 chr11 22742670 22742736 -99101120 - MIRm SINE MIR -145 131 64 5 758 36 0 0 0 chr11 22742797 22742833 -99101023 + AT_rich Low_complexity Low_complexity 1 36 0 5 758 230 286 35 12 chr11 22743753 22743838 -99100018 + MTEa LTR MaLR 293 379 0 5 758 341 241 25 0 chr11 22744720 22744799 -99099057 + ID4 SINE ID 3 83 0 5 758 771 164 97 0 chr11 22744973 22745107 -99098749 + B1_Mus1 SINE Alu 2 148 0 5 758 356 0 0 75 chr11 22745121 22745174 -99098682 + (A)n Simple_repeat Simple_repeat 1 49 0 5 758 253 246 147 133 chr11 22746186 22746397 -99097459 - LTR41 LTR ERVL -538 230 17 5 758 306 0 0 0 chr11 22749387 22749421 -99094435 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 758 719 186 108 43 chr11 22749458 22749643 -99094213 + B3A SINE B2 2 198 0 5 758 261 276 81 54 chr11 22749664 22749775 -99094081 + PB1D10 SINE Alu 1 114 -3 5 758 407 290 207 0 chr11 22750141 22750310 -99093546 + ID_B1 SINE B4 5 208 -16 5 758 228 354 13 0 chr11 22750328 22750407 -99093449 + ID4_ SINE ID 1 80 -3 5 758 273 89 0 0 chr11 22752301 22752346 -99091510 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 758 198 0 0 0 chr11 22752346 22752368 -99091488 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 758 344 254 32 8 chr11 22752507 22752617 -99091239 - B1_Mus2 SINE Alu -28 121 10 5 758 317 193 34 67 chr11 22752545 22752634 -99091222 - MT2B LTR ERVL -361 240 155 5 758 224 308 82 55 chr11 22752634 22752647 -99091209 - B4 SINE B4 -110 146 70 5 758 193 283 126 39 chr11 22753564 22753667 -99090189 - L2 LINE L2 -566 2853 2742 5 758 756 52 0 0 chr11 22754479 22754576 -99089280 + B1_Mus2 SINE Alu 39 135 -12 5 758 198 0 0 0 chr11 22754578 22754600 -99089256 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 5 758 400 165 73 64 chr11 22754966 22755076 -99088780 + B1_Mur2 SINE Alu 31 141 -8 5 758 1151 49 0 0 chr11 22755081 22755223 -99088633 + B1_Mm SINE Alu 6 147 0 5 758 358 326 93 14 chr11 22755378 22755518 -99088338 - RSINE1 SINE B4 -12 153 3 5 758 332 267 52 22 chr11 22755522 22755632 -99088224 - MIRb SINE MIR -45 163 58 5 758 1262 107 0 6 chr11 22755734 22755894 -99087962 + B2_Mm2 SINE B2 2 161 -34 5 758 486 0 0 0 chr11 22755894 22755948 -99087908 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 758 1262 107 0 6 chr11 22755948 22755966 -99087890 + B2_Mm2 SINE B2 162 179 -16 5 758 27 0 0 0 chr11 22756291 22756318 -99087538 + AT_rich Low_complexity Low_complexity 1 27 0 5 758 550 156 44 35 chr11 22757408 22757521 -99086335 - PB1D7 SINE Alu 0 120 7 5 758 225 0 0 0 chr11 22760811 22760836 -99083020 + (T)n Simple_repeat Simple_repeat 1 25 0 5 758 22 0 0 0 chr11 22761743 22761765 -99082091 + AT_rich Low_complexity Low_complexity 1 22 0 5 758 949 182 330 40 chr11 22761842 22762163 -99081693 - MTD LTR MaLR -3 416 3 5 758 31 0 0 0 chr11 22762163 22762194 -99081662 + AT_rich Low_complexity Low_complexity 1 31 0 5 758 21 36 0 0 chr11 22762905 22762933 -99080923 + AT_rich Low_complexity Low_complexity 1 28 0 5 758 306 73 0 0 chr11 22763006 22763047 -99080809 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 758 418 186 0 0 chr11 22763120 22763190 -99080666 + B3 SINE B2 2 71 -145 5 758 291 313 20 87 chr11 22764376 22764572 -99079284 - L2c LINE L2 -69 3318 3136 5 758 1015 208 17 73 chr11 22765321 22765554 -99078302 + URR1B DNA MER1_type 6 225 0 5 758 360 250 158 22 chr11 22767057 22767196 -99076660 + L1ME2 LINE L1 5875 6032 -132 5 758 707 317 41 31 chr11 22768258 22768548 -99075308 - LTR16A LTR ERVL -105 346 54 5 758 647 38 0 0 chr11 22768900 22768979 -99074877 + U6 snRNA snRNA 1 79 -28 5 758 542 236 61 37 chr11 22769692 22769855 -99074001 + RMER15 LTR ERVL 406 572 -3 5 758 1215 69 35 6 chr11 22769931 22770105 -99073751 + URR1B DNA MER1_type 47 225 0 5 758 266 317 0 35 chr11 22770140 22770225 -99073631 - ID4 SINE ID -1 82 1 5 758 447 19 0 0 chr11 22770356 22770408 -99073448 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 5 758 237 65 0 0 chr11 22770509 22770540 -99073316 + (TGG)n Simple_repeat Simple_repeat 1 31 0 5 758 358 287 40 50 chr11 22770540 22770639 -99073217 - PB1D7 SINE Alu -22 98 1 5 758 252 349 9 70 chr11 22770639 22770654 -99073202 - ID_B1 SINE B4 -48 176 70 5 758 196 54 0 75 chr11 22771345 22771385 -99072471 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 5 758 254 250 19 146 chr11 22772479 22772582 -99071274 - RMER15 LTR ERVL -328 247 158 5 758 419 265 35 56 chr11 22772618 22772762 -99071094 + B1F SINE Alu 6 146 -3 5 758 280 294 56 99 chr11 22772762 22772780 -99071076 + B4A SINE B4 91 245 -47 5 758 252 86 0 0 chr11 22774533 22774568 -99069288 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 758 232 191 48 0 chr11 22775766 22775808 -99068048 - ID2 SINE ID -36 47 4 5 758 493 163 20 39 chr11 22775957 22776059 -99067797 + PB1D9 SINE Alu 5 104 -16 5 758 678 194 177 6 chr11 22776059 22776239 -99067617 + B3 SINE B2 1 212 -4 5 758 1155 68 7 0 chr11 22776248 22776394 -99067462 + B1_Mus2 SINE Alu 1 147 0 5 758 827 134 7 43 chr11 22776720 22776860 -99066996 - B1_Mur3 SINE Alu -13 136 2 5 758 370 195 52 0 chr11 22777409 22777486 -99066370 - L1MC3 LINE L1 -1576 6209 6129 5 758 637 155 47 21 chr11 22777491 22777625 -99066231 + B1_Mur2 SINE Alu 1 128 -21 5 758 398 302 90 45 chr11 22777592 22777769 -99066087 + B4 SINE B4 106 290 -2 5 758 321 89 0 0 chr11 22777785 22777830 -99066026 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 758 1026 80 66 0 chr11 22777867 22778004 -99065852 + B1_Mus2 SINE Alu 2 147 0 5 758 23 33 0 0 chr11 22778006 22778036 -99065820 + AT_rich Low_complexity Low_complexity 1 30 0 5 758 191 111 0 82 chr11 22778381 22778430 -99065426 + T-rich Low_complexity Low_complexity 2 46 0 5 758 675 156 14 36 chr11 22778434 22778574 -99065282 - B1_Mus2 SINE Alu 0 147 11 5 758 478 294 114 33 chr11 22779057 22779431 -99064425 - L1MD1 LINE L1 -485 5874 5469 5 758 251 232 0 0 chr11 22781024 22781080 -99062776 + MLT1C LTR MaLR 43 98 -276 5 758 310 253 0 0 chr11 22781172 22781247 -99062609 + MLT1C LTR MaLR 374 448 -19 5 758 1399 165 96 96 chr11 22781385 22781748 -99062108 + ORR1C2 LTR MaLR 3 365 -19 5 758 4932 163 162 80 chr11 22781754 22782143 -99061713 + ORR1C2-int LTR MaLR 36 399 -1110 5 758 718 216 65 0 chr11 22782143 22782282 -99061574 - RSINE1 SINE B4 -15 150 3 5 758 4932 163 162 80 chr11 22782282 22783004 -99060852 + ORR1C2-int LTR MaLR 400 1282 -227 5 758 417 20 0 0 chr11 22783004 22783054 -99060802 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 758 4932 163 162 80 chr11 22783054 22783303 -99060553 + ORR1C2-int LTR MaLR 1283 1509 0 5 758 380 190 13 0 chr11 22783306 22783384 -99060472 + ORR1C2 LTR MaLR 5 83 -301 5 758 1169 214 83 57 chr11 22783384 22783843 -99060013 + MT2B LTR ERVL 1 541 -60 5 758 292 260 173 0 chr11 22783989 22784093 -99059763 - ORR1E LTR MaLR -225 134 13 5 758 506 336 118 12 chr11 22784089 22784157 -99059699 + MLT1C LTR MaLR 104 174 -293 5 758 1230 139 77 0 chr11 22784157 22784366 -99059490 - URR1A DNA MER1_type 0 226 2 5 758 506 336 118 12 chr11 22784366 22784619 -99059237 + MLT1C LTR MaLR 175 459 -8 5 758 819 159 7 0 chr11 22785127 22785272 -99058584 + B2_Mm2 SINE B2 1 146 -49 5 758 288 0 0 0 chr11 22785364 22785396 -99058460 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 758 369 0 0 0 chr11 22785396 22785436 -99058420 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 758 1245 138 108 0 chr11 22785639 22785842 -99058014 - URR1B DNA MER1_type 0 225 1 5 758 1157 68 0 7 chr11 22785848 22785995 -99057861 + B1_Mm SINE Alu 2 147 0 5 758 269 284 58 10 chr11 22786128 22786231 -99057625 - L1MC5 LINE L1 -562 7399 7292 5 758 375 239 0 0 chr11 22786274 22786383 -99057473 + (CCA)n Simple_repeat Simple_repeat 2 110 0 5 758 2110 172 36 38 chr11 22786692 22787110 -99056746 + MTC LTR MaLR 5 421 0 5 758 643 183 53 0 chr11 22787717 22787848 -99056008 + B1_Mur2 SINE Alu 2 139 -10 5 758 207 0 0 0 chr11 22788009 22788032 -99055824 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 758 327 228 51 0 chr11 22788780 22788859 -99054997 - MER57E2 LTR ERV1 -1 401 319 5 758 282 153 235 0 chr11 22789043 22789128 -99054728 - Charlie10 DNA MER1_type 0 2822 2718 5 758 432 267 199 7 chr11 22789351 22789502 -99054354 + B3A SINE B2 1 180 -18 5 758 275 253 156 10 chr11 22789754 22789850 -99054006 + RSINE1 SINE B4 2 111 -54 5 758 1096 64 35 0 chr11 22789912 22790053 -99053803 + B1_Mm SINE Alu 2 147 0 5 758 324 0 0 0 chr11 22790079 22790115 -99053741 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 758 677 129 17 8 chr11 22790117 22790234 -99053622 + B1_Mus1 SINE Alu 26 143 -5 5 758 835 170 69 74 chr11 22790256 22790472 -99053384 - B3 SINE B2 0 216 2 5 758 269 295 99 80 chr11 22790744 22790906 -99052950 + MER63B DNA AcHobo 269 433 -3 5 758 578 201 27 48 chr11 22792251 22792397 -99051459 - ID_B1 SINE B4 -1 223 81 5 758 221 271 50 17 chr11 22793053 22793113 -99050743 + ID SINE ID 26 87 -137 5 758 236 326 61 21 chr11 22793507 22793653 -99050203 - MIR SINE MIR -103 159 19 5 758 228 67 0 0 chr11 22793728 22793758 -99050098 + (TAATG)n Simple_repeat Simple_repeat 4 33 0 5 758 225 243 26 26 chr11 22794002 22794078 -99049778 - L2c LINE L2 -55 3332 3257 5 758 453 250 157 37 chr11 22794169 22794360 -99049496 + B3A SINE B2 2 215 -1 5 758 1205 62 0 0 chr11 22794367 22794512 -99049344 + B1_Mm SINE Alu 1 145 -2 5 758 243 0 0 0 chr11 22794512 22794539 -99049317 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 758 217 245 19 19 chr11 22794734 22794788 -99049068 - B4A SINE B4 -195 97 44 6 758 249 108 0 0 chr11 22794875 22794912 -99048944 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 6 758 544 262 0 16 chr11 22794921 22795045 -99048811 - RSINE1 SINE B4 -38 127 6 6 758 784 206 140 21 chr11 22795300 22795493 -99048363 - B3 SINE B2 0 216 1 6 758 1249 41 0 0 chr11 22795569 22795715 -99048141 - B1_Mus2 SINE Alu 0 147 2 6 758 1895 221 62 46 chr11 22796014 22796512 -99047344 - RMER20A LTR ERVK 0 516 11 6 758 1465 242 38 55 chr11 22796677 22797128 -99046728 + RLTR20B1 LTR ERVK 49 491 -72 6 758 271 180 0 0 chr11 22797471 22797521 -99046335 + B1_Mur4 SINE Alu 2 51 -99 6 758 282 195 57 176 chr11 22798539 22798732 -99045124 + MTEb LTR MaLR 200 369 -10 6 758 455 255 47 87 chr11 22798902 22799052 -99044804 + RSINE1 SINE B4 22 165 0 6 758 511 191 17 43 chr11 22799487 22799602 -99044254 - PB1D9 SINE Alu 0 120 9 6 758 265 245 39 141 chr11 22799522 22799650 -99044206 - MT2B LTR ERVL -361 240 126 6 758 226 182 0 0 chr11 22799777 22799821 -99044035 - Lx8 LINE L1 -2 7471 7428 6 758 1431 167 178 27 chr11 22800103 22800435 -99043421 + ORR1C2 LTR MaLR 2 383 -1 6 758 274 286 61 48 chr11 22800661 22800808 -99043048 - MIRb SINE MIR -100 168 20 6 758 322 284 0 0 chr11 22801334 22801415 -99042441 + MER34A LTR ERV1 1 81 -490 6 758 420 82 0 0 chr11 22801644 22801705 -99042151 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 758 604 261 210 13 chr11 22801727 22801956 -99041900 - B4 SINE B4 -18 274 1 6 758 637 241 0 29 chr11 22801980 22802117 -99041739 - B1_Mur1 SINE Alu -15 134 2 6 758 663 231 198 32 chr11 22802124 22802432 -99041424 - L1MA6 LINE L1 -1 6299 5941 6 758 293 269 15 0 chr11 22802433 22802500 -99041356 - ID4_ SINE ID -4 79 12 6 758 366 259 12 0 chr11 22802522 22802607 -99041249 - RSINE1 SINE B4 0 165 80 6 758 827 157 13 45 chr11 22802755 22802909 -99040947 - B1_Mur3 SINE Alu 0 149 1 6 758 738 294 35 48 chr11 22802909 22803220 -99040636 - L1MA6 LINE L1 -350 5950 5644 6 758 207 162 0 0 chr11 22803477 22803514 -99040342 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 758 201 174 21 21 chr11 22803899 22803946 -99039910 - MIRc SINE MIR -45 223 177 6 758 763 264 35 20 chr11 22804372 22804573 -99039283 + ID_B1 SINE B4 6 209 -15 6 758 439 312 0 21 chr11 22804837 22804978 -99038878 + B1F SINE Alu 2 139 -10 6 758 237 65 0 0 chr11 22804978 22805009 -99038847 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 6 758 297 0 0 0 chr11 22805009 22805042 -99038814 + (CAAG)n Simple_repeat Simple_repeat 1 33 0 6 758 283 278 0 0 chr11 22805248 22805320 -99038536 + BC1_Mm scRNA scRNA 20 91 -61 6 758 215 176 0 38 chr11 22805332 22805385 -99038471 + GA-rich Low_complexity Low_complexity 4 54 0 6 758 246 32 0 0 chr11 22805731 22805762 -99038094 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 6 758 297 258 0 0 chr11 22806116 22806182 -99037674 - ID4 SINE ID -16 67 2 6 759 1244 54 0 0 chr11 22807324 22807471 -99036385 + B1_Mus2 SINE Alu 1 147 0 6 759 30 27 0 0 chr11 22807472 22807509 -99036347 + AT_rich Low_complexity Low_complexity 1 37 0 6 759 516 231 25 31 chr11 22807677 22807843 -99036013 + B3 SINE B2 32 195 0 6 759 653 240 75 12 chr11 22807852 22808025 -99035831 + B3 SINE B2 28 211 -5 6 759 290 247 58 23 chr11 22808603 22808690 -99035166 + LTR48 LTR ERV1 559 648 -139 6 759 774 88 0 0 chr11 22808690 22808815 -99035041 + (CA)n Simple_repeat Simple_repeat 2 126 0 6 759 1099 144 179 53 chr11 22809452 22809737 -99034119 + ORR1A4 LTR MaLR 1 321 -8 6 759 399 329 42 14 chr11 22810077 22810219 -99033637 - RSINE1 SINE B4 -4 161 16 6 759 263 296 71 36 chr11 22810232 22810400 -99033456 + MER57A-int LTR ERV1 1103 1276 -4911 6 759 238 277 43 43 chr11 22810849 22810966 -99032890 + MIRc SINE MIR 24 140 -128 6 759 337 244 66 11 chr11 22811235 22811326 -99032530 + B4A SINE B4 1 96 -196 6 759 1002 69 0 0 chr11 22811328 22811459 -99032397 + B1_Mur4 SINE Alu 1 131 -19 6 759 21 82 0 0 chr11 22811663 22811712 -99032144 + AT_rich Low_complexity Low_complexity 1 49 0 6 759 1288 88 44 0 chr11 22812671 22812852 -99031004 + B2_Mm2 SINE B2 1 189 -6 6 759 486 262 57 63 chr11 22812877 22813036 -99030820 + B3 SINE B2 1 158 -58 6 759 339 85 0 0 chr11 22813041 22813088 -99030768 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 759 501 312 7 0 chr11 22813226 22813370 -99030486 + ID_B1 SINE B4 79 223 -1 6 759 255 269 152 15 chr11 22813751 22813883 -99029973 - MLT1A1 LTR MaLR -258 150 1 6 759 194 0 39 0 chr11 22814114 22814140 -99029716 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 759 502 236 189 17 chr11 22814537 22814770 -99029086 + RMER15 LTR ERVL 303 575 0 6 759 1181 50 0 0 chr11 22814849 22814988 -99028868 + B1_Mus1 SINE Alu 1 139 -9 6 759 854 93 16 0 chr11 22814988 22815117 -99028739 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 6 759 343 224 15 0 chr11 22815395 22815462 -99028394 + U4 snRNA snRNA 1 68 -77 6 759 247 258 0 96 chr11 22816011 22816084 -99027772 - PB1D7 SINE Alu -46 74 9 6 759 629 129 74 49 chr11 22816124 22816246 -99027610 - B1_Mus1 SINE Alu -12 136 12 6 759 198 167 0 0 chr11 22816282 22816318 -99027538 + A-rich Low_complexity Low_complexity 1 36 0 6 759 1086 210 0 18 chr11 22816337 22816555 -99027301 - B3 SINE B2 -2 214 1 6 759 951 218 69 5 chr11 22816684 22816887 -99026969 - B3 SINE B2 0 216 1 6 759 180 0 0 0 chr11 22816946 22816966 -99026890 + (A)n Simple_repeat Simple_repeat 1 20 0 6 759 207 0 0 0 chr11 22817221 22817244 -99026612 + (T)n Simple_repeat Simple_repeat 1 23 0 6 759 1004 201 10 5 chr11 22817248 22817443 -99026413 - MTD LTR MaLR -159 260 65 6 759 202 204 0 0 chr11 22817492 22817536 -99026320 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 6 759 925 219 78 21 chr11 22817562 22817753 -99026103 + B3 SINE B2 2 203 -13 6 759 4367 115 98 86 chr11 22817761 22818654 -99025202 + RMER17A2 LTR ERVK 3 906 0 6 759 296 232 10 0 chr11 22818686 22818785 -99025071 + GA-rich Low_complexity Low_complexity 2 101 0 6 759 489 299 136 0 chr11 22818831 22819008 -99024848 + MER58A DNA MER1_type 8 208 -16 6 759 342 0 0 0 chr11 22819017 22819055 -99024801 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 759 779 244 114 0 chr11 22819104 22819297 -99024559 + B3 SINE B2 2 216 0 6 759 632 259 15 15 chr11 22819506 22819643 -99024213 + RSINE1 SINE B4 7 143 -22 6 759 895 152 35 0 chr11 22820342 22820487 -99023369 + B1_Mur4 SINE Alu 1 150 0 6 759 844 66 197 0 chr11 22820490 22820612 -99023244 + B1_Mus2 SINE Alu 1 146 -1 6 759 241 117 33 0 chr11 22820613 22820673 -99023183 + (CAAAA)n Simple_repeat Simple_repeat 1 62 0 6 759 475 215 0 27 chr11 22821502 22821604 -99022252 - MTE2b LTR MaLR 0 379 281 6 759 1497 134 92 20 chr11 22821604 22821908 -99021948 + ORR1B2 LTR MaLR 1 326 -41 6 759 227 103 77 0 chr11 22822055 22822094 -99021762 + ORR1B2 LTR MaLR 325 366 -1 6 759 253 172 34 17 chr11 22822097 22822156 -99021700 + ORR1B2-int LTR MaLR 3 62 -1447 6 759 1427 214 236 30 chr11 22822215 22822711 -99021145 - RMER20B LTR ERVK -29 598 1 6 759 2565 197 153 7 chr11 22822711 22823411 -99020445 + ORR1B2-int LTR MaLR 39 840 -669 6 759 1063 42 0 14 chr11 22823380 22823525 -99020331 + B1_Mus1 SINE Alu 6 148 0 6 759 294 95 0 0 chr11 22823532 22823574 -99020282 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 6 759 345 230 14 0 chr11 22823585 22823659 -99020197 - MTD LTR MaLR -299 120 46 6 759 675 207 193 5 chr11 22823696 22823919 -99019937 - MTE2b LTR MaLR -111 268 4 6 759 297 309 71 0 chr11 22824716 22824800 -99019056 + PB1 SINE Alu 1 90 -37 6 759 656 172 80 22 chr11 22824802 22824939 -99018917 + B1_Mur1 SINE Alu 5 149 0 6 759 925 243 0 19 chr11 22825605 22825819 -99018037 - B3 SINE B2 -4 212 3 6 759 1057 109 0 0 chr11 22826300 22826456 -99017400 + B2_Mm2 SINE B2 6 161 -34 6 759 1607 239 27 30 chr11 22826494 22826899 -99016957 + RMER15 LTR ERVL 170 573 -2 6 759 583 270 138 21 chr11 22826935 22827124 -99016732 + ID_B1 SINE B4 2 212 -12 6 759 1194 68 0 0 chr11 22827145 22827293 -99016563 + B1_Mus1 SINE Alu 1 148 0 6 759 194 91 0 64 chr11 22827293 22827340 -99016516 + A-rich Low_complexity Low_complexity 1 44 0 6 759 2016 127 21 72 chr11 22827356 22827788 -99016068 + RMER17C LTR ERVK 1 410 0 6 759 251 118 39 13 chr11 22828003 22828080 -99015776 + A-rich Low_complexity Low_complexity 3 81 0 6 759 453 243 143 0 chr11 22828418 22828580 -99015276 + MTE2b LTR MaLR 1 187 -192 6 759 1228 187 224 3 chr11 22828585 22828928 -99014928 + MTD LTR MaLR 1 419 0 6 759 401 237 199 0 chr11 22828931 22829087 -99014769 + MTE2b LTR MaLR 193 379 0 6 759 966 91 30 0 chr11 22829969 22830101 -99013755 - B1_Mus1 SINE Alu -11 137 2 6 759 1371 132 60 4 chr11 22830119 22830370 -99013486 + ORR1B1 LTR MaLR 1 265 -129 6 759 324 314 42 17 chr11 22831231 22831351 -99012505 + B1F2 SINE Alu 5 127 -22 6 759 415 231 63 71 chr11 22831688 22831817 -99012039 - PB1D10 SINE Alu -9 140 12 6 759 239 279 16 0 chr11 22831769 22831830 -99012026 - B4A SINE B4 -147 145 84 6 759 499 286 193 50 chr11 22832334 22832614 -99011242 - MTEb LTR MaLR 0 379 60 6 759 700 299 18 12 chr11 22832654 22832823 -99011033 - ID_B1 SINE B4 0 224 55 7 759 215 232 41 55 chr11 22833331 22833404 -99010452 - ID SINE ID -151 73 2 7 759 333 127 44 165 chr11 22833785 22833911 -99009945 + B1F SINE Alu 9 149 0 7 759 501 254 188 15 chr11 22833999 22834334 -99009522 - L1M4 LINE L1 -646 5533 5147 7 759 269 51 26 0 chr11 22834500 22834539 -99009317 + (TCTCCC)n Simple_repeat Simple_repeat 6 45 0 7 759 357 275 0 71 chr11 22834644 22834804 -99009052 - L1M4 LINE L1 -1186 4960 4817 7 759 363 287 140 0 chr11 22834867 22835003 -99008853 - RSINE1 SINE B4 -8 157 3 7 759 401 264 136 0 chr11 22835011 22835136 -99008720 - B1F SINE Alu -6 143 2 7 759 21 0 0 0 chr11 22836136 22836157 -99007699 + AT_rich Low_complexity Low_complexity 1 21 0 7 759 303 93 0 0 chr11 22837337 22837380 -99006476 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 7 759 304 267 34 110 chr11 22837380 22837477 -99006379 + PB1D10 SINE Alu 1 89 -28 7 759 1392 57 0 28 chr11 22837477 22837497 -99006359 - B2_Mm2 SINE B2 -18 177 162 7 759 198 0 0 0 chr11 22837497 22837519 -99006337 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 7 759 1392 57 0 28 chr11 22837519 22837679 -99006177 - B2_Mm2 SINE B2 -34 161 2 7 759 304 267 34 110 chr11 22837679 22837699 -99006157 + PB1D10 SINE Alu 90 109 -8 7 759 768 201 0 63 chr11 22839221 22839380 -99004476 - B1_Mur3 SINE Alu 0 149 1 7 759 1191 48 7 0 chr11 22840410 22840555 -99003301 + B1_Mm SINE Alu 2 147 0 7 759 522 245 33 53 chr11 22840857 22841008 -99002848 - MER2 DNA MER2_type -1 344 197 7 759 870 168 27 38 chr11 22841009 22841195 -99002661 - B2_Mm2 SINE B2 -10 185 2 7 759 481 288 71 14 chr11 22841276 22841417 -99002439 - B3A SINE B2 -30 168 20 7 759 364 315 0 0 chr11 22841427 22841538 -99002318 - MER2 DNA MER2_type -141 204 94 7 759 937 235 9 32 chr11 22841557 22841777 -99002079 - B3 SINE B2 0 216 2 7 759 273 268 56 0 chr11 22841777 22841848 -99002008 - B1_Mus2 SINE Alu -70 77 3 7 759 284 235 9 0 chr11 22841794 22841861 -99001995 - B4 SINE B4 -151 141 71 7 759 946 251 159 75 chr11 22841984 22842475 -99001381 + MER44B DNA MER2_type 5 536 -14 7 759 998 128 7 13 chr11 22842652 22842802 -99001054 + B1_Mur2 SINE Alu 1 149 0 7 759 186 128 0 0 chr11 22842962 22843001 -99000855 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 7 759 861 231 8 6 chr11 22843276 22843453 -99000403 + B3 SINE B2 1 181 -17 7 759 675 173 0 0 chr11 22843454 22843593 -99000263 + (CCCA)n Simple_repeat Simple_repeat 3 141 0 7 759 222 264 0 0 chr11 22843964 22844017 -98999839 + CT-rich Low_complexity Low_complexity 2 54 0 7 759 1256 34 0 0 chr11 22844339 22844486 -98999370 + B1_Mus2 SINE Alu 1 147 0 7 759 273 57 0 0 chr11 22844486 22844521 -98999335 + (A)n Simple_repeat Simple_repeat 1 35 0 7 759 30 0 0 0 chr11 22845080 22845110 -98998746 + AT_rich Low_complexity Low_complexity 1 30 0 7 759 240 163 61 0 chr11 22845246 22845295 -98998561 + B1F SINE Alu 85 136 -13 7 759 291 28 0 0 chr11 22845306 22845342 -98998514 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 759 1045 67 0 29 chr11 22845342 22845480 -98998376 - B1_Mus2 SINE Alu -13 134 1 7 759 1069 231 13 9 chr11 22845553 22845784 -98998072 + Lx6 LINE L1 6289 6520 -940 7 759 567 246 0 8 chr11 22846066 22846185 -98997671 + B3A SINE B2 15 132 -66 7 759 306 0 0 0 chr11 22846197 22846231 -98997625 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 759 767 182 29 0 chr11 22846782 22846919 -98996937 + B1_Mur2 SINE Alu 1 141 -8 7 759 659 160 104 21 chr11 22847050 22847232 -98996624 - B3 SINE B2 0 195 6 7 759 909 70 16 0 chr11 22847280 22847409 -98996447 + B1_Mus2 SINE Alu 17 147 0 7 759 340 274 55 28 chr11 22847926 22848035 -98995821 + B3A SINE B2 87 198 0 7 759 937 151 53 26 chr11 22848165 22848355 -98995501 + URR1B DNA MER1_type 31 225 0 7 759 991 65 64 7 chr11 22848682 22848822 -98995034 + B1_Mus1 SINE Alu 1 148 0 7 759 869 171 485 0 chr11 22849187 22849445 -98994411 + ORR1C2 LTR MaLR 2 384 0 7 759 811 67 58 0 chr11 22849813 22849933 -98993923 + B2_Mm1t SINE B2 2 128 -65 7 759 803 170 0 20 chr11 22850102 22850252 -98993604 + B1_Mur3 SINE Alu 3 149 0 7 759 575 211 158 0 chr11 22850265 22850436 -98993420 - B3A SINE B2 0 198 1 7 759 3365 33 8 0 chr11 22850931 22851324 -98992532 - MTA_Mm LTR MaLR 0 396 1 7 759 23 0 0 0 chr11 22851469 22851492 -98992364 + AT_rich Low_complexity Low_complexity 1 23 0 7 759 720 163 14 22 chr11 22851516 22851654 -98992202 + B2_Mm2 SINE B2 1 137 -58 7 759 1354 81 27 0 chr11 22851795 22851980 -98991876 - B2_Mm2 SINE B2 -5 190 1 7 759 651 219 0 0 chr11 22852355 22852469 -98991387 + RSINE1 SINE B4 31 144 -21 7 759 1266 183 9 0 chr11 22853065 22853278 -98990578 - B3 SINE B2 0 216 2 7 759 343 287 49 8 chr11 22853571 22853694 -98990162 + B1F SINE Alu 21 148 -1 7 759 733 297 73 46 chr11 22853789 22854370 -98989486 + L1M2 LINE L1 2157 2788 -3794 7 759 792 96 105 56 chr11 22854370 22854513 -98989343 + B1_Mur4 SINE Alu 1 150 0 7 759 649 297 73 46 chr11 22854513 22854534 -98989322 + L1M2 LINE L1 2789 2810 -3772 7 759 1182 75 0 0 chr11 22854751 22854897 -98988959 - B1_Mm SINE Alu 0 147 2 7 759 693 270 131 0 chr11 22855040 22855292 -98988564 + MER2 DNA MER2_type 20 304 -41 7 759 1047 233 113 72 chr11 22856790 22857363 -98986493 - RMER1B Other Other -294 772 2 7 759 817 168 45 66 chr11 22858060 22858258 -98985598 + B2_Mm2 SINE B2 2 195 0 7 759 29 28 0 0 chr11 22858272 22858308 -98985548 + AT_rich Low_complexity Low_complexity 1 36 0 7 759 363 311 50 0 chr11 22858417 22858536 -98985320 + B1F2 SINE Alu 7 131 -18 7 759 220 231 29 71 chr11 22858992 22859062 -98984794 + B4A SINE B4 78 144 -148 7 759 466 165 183 0 chr11 22859014 22859105 -98984751 + B1_Mus2 SINE Alu 11 117 -30 7 759 201 39 0 0 chr11 22859105 22859131 -98984725 + (CAA)n Simple_repeat Simple_repeat 3 28 0 7 759 466 165 183 0 chr11 22859131 22859154 -98984702 + B1_Mus2 SINE Alu 118 145 -2 7 759 636 63 63 0 chr11 22859156 22859251 -98984605 + B1_Mus2 SINE Alu 47 147 0 7 759 298 260 67 0 chr11 22859416 22859520 -98984336 + MER20B DNA MER1_type 226 336 -447 7 759 250 260 19 94 chr11 22859576 22859682 -98984174 + MER20B DNA MER1_type 440 537 -246 7 759 435 206 19 19 chr11 22859771 22859929 -98983927 + (TG)n Simple_repeat Simple_repeat 1 158 0 7 759 736 281 109 11 chr11 22859978 22860244 -98983612 - B4A SINE B4 0 292 1 7 759 1115 139 37 33 chr11 22860319 22860534 -98983322 + B3 SINE B2 1 216 0 7 759 279 0 0 0 chr11 22861086 22861117 -98982739 + (A)n Simple_repeat Simple_repeat 1 31 0 7 759 401 226 92 35 chr11 22861150 22861324 -98982532 + L1MD3 LINE L1 4987 5170 -976 7 759 556 25 38 0 chr11 22861324 22861403 -98982453 + L1Md_F2 LINE L1 6501 6582 0 7 759 295 361 9 9 chr11 22861578 22861687 -98982169 + RSINE1 SINE B4 43 151 -14 7 759 321 47 0 0 chr11 22861688 22861731 -98982125 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 759 1220 43 0 0 chr11 22861749 22861890 -98981966 + B1_Mm SINE Alu 1 141 -6 7 759 243 0 0 0 chr11 22861892 22861919 -98981937 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 759 308 227 30 0 chr11 22861927 22861993 -98981863 - B3 SINE B2 -5 211 144 7 759 243 0 0 0 chr11 22862018 22862045 -98981811 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 759 566 237 21 43 chr11 22862053 22862194 -98981662 - B3 SINE B2 -5 211 74 7 759 1607 167 84 12 chr11 22862192 22862526 -98981330 + MTD LTR MaLR 54 411 -8 7 759 21 0 0 0 chr11 22863032 22863053 -98980803 + AT_rich Low_complexity Low_complexity 1 21 0 7 759 714 241 42 96 chr11 22863185 22863663 -98980193 + L1MD3 LINE L1 5548 5976 -2019 7 759 231 191 0 0 chr11 22863740 22863808 -98980048 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 759 432 304 0 0 chr11 22863864 22864032 -98979824 + (TG)n Simple_repeat Simple_repeat 1 168 0 7 759 401 300 85 0 chr11 22864075 22864205 -98979651 + L1MD3 LINE L1 6088 6228 -105 7 759 516 214 25 33 chr11 22864230 22864351 -98979505 + PB1D9 SINE Alu 1 120 0 7 759 359 247 12 6 chr11 22864738 22864853 -98979003 + B1F SINE Alu 1 149 0 7 759 401 242 3 5 chr11 22864873 22864972 -98978884 + BC1_Mm scRNA scRNA 1 98 -54 7 759 1525 67 0 5 chr11 22865739 22865934 -98977922 - B2_Mm2 SINE B2 -1 194 1 7 759 585 93 0 10 chr11 22865962 22866060 -98977796 + Lx LINE L1 6554 6650 -4 7 759 401 273 65 87 chr11 22866106 22866335 -98977521 - B4A SINE B4 -59 233 10 7 759 702 218 75 38 chr11 22866381 22866567 -98977289 + B3A SINE B2 6 198 0 7 759 1561 115 4 28 chr11 22866643 22866894 -98976962 - ORR1A2 LTR MaLR 0 327 83 7 759 2013 166 68 3 chr11 22866898 22867267 -98976589 + ORR1B1 LTR MaLR 1 393 -1 7 759 507 212 35 26 chr11 22867278 22867394 -98976462 + B1_Mur2 SINE Alu 2 118 -31 7 759 351 0 0 0 chr11 22867394 22867433 -98976423 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 759 3173 131 116 24 chr11 22867465 22868097 -98975759 - RMER6C LTR ERVK 0 690 1 7 759 898 175 101 20 chr11 22868414 22868612 -98975244 + B3 SINE B2 2 215 -1 7 759 484 210 0 10 chr11 22868620 22868721 -98975135 + PB1D9 SINE Alu 1 100 -20 7 759 300 91 0 0 chr11 22868801 22868845 -98975011 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 7 759 270 283 21 32 chr11 22868877 22868972 -98974884 - ID_B1 SINE B4 -55 169 76 7 759 504 250 40 34 chr11 22869030 22869202 -98974654 - B3 SINE B2 0 195 27 7 759 658 98 0 0 chr11 22869225 22869317 -98974539 - B1_Mus1 SINE Alu -56 92 1 7 759 374 170 0 93 chr11 22869233 22869330 -98974526 - MT2B LTR ERVL -361 240 153 7 759 21 57 0 0 chr11 22869330 22869365 -98974491 + AT_rich Low_complexity Low_complexity 1 35 0 7 759 29 0 0 0 chr11 22869480 22869509 -98974347 + AT_rich Low_complexity Low_complexity 1 29 0 8 759 270 376 0 0 chr11 22869743 22869844 -98974012 + B1F SINE Alu 39 139 -10 8 759 210 37 0 0 chr11 22869862 22869889 -98973967 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 759 780 152 30 8 chr11 22869889 22870022 -98973834 - B1_Mm SINE Alu -9 138 3 8 759 1910 127 21 6 chr11 22870125 22870451 -98973405 + RLTR14 LTR ERV1 1 331 -51 8 759 2102 87 91 0 chr11 22870933 22871231 -98972625 - ORR1A2 LTR MaLR -2 325 1 8 759 477 156 0 0 chr11 22871231 22871308 -98972548 - ORR1A2-int LTR MaLR 0 1963 1887 8 759 420 141 0 25 chr11 22871305 22871377 -98972479 + B1_Mur3 SINE Alu 72 142 -7 8 759 207 0 0 0 chr11 22871377 22871400 -98972456 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 759 363 131 0 16 chr11 22871404 22871466 -98972390 + RLTR14 LTR ERV1 320 380 -2 8 759 1199 42 0 0 chr11 22871535 22871679 -98972177 - B1_Mus2 SINE Alu -2 145 2 8 759 284 336 56 8 chr11 22871751 22871877 -98971979 + B4A SINE B4 1 132 -160 8 759 342 0 0 0 chr11 22873176 22873214 -98970642 + (C)n Simple_repeat Simple_repeat 1 38 0 8 759 230 406 0 17 chr11 22873448 22873621 -98970235 + GA-rich Low_complexity Low_complexity 1 170 0 8 759 531 219 68 30 chr11 22874969 22875101 -98968755 - B1_Mur1 SINE Alu -2 147 11 8 759 189 0 0 0 chr11 22875140 22875161 -98968695 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 759 222 264 19 0 chr11 22875759 22875812 -98968044 - B1F SINE Alu -95 54 1 8 759 497 177 221 0 chr11 22876068 22876181 -98967675 + B1_Mur1 SINE Alu 10 147 -2 8 759 283 122 0 0 chr11 22876187 22876228 -98967628 + B3 SINE B2 1 41 -175 8 759 525 293 53 0 chr11 22876295 22876428 -98967428 + RSINE1 SINE B4 2 141 -24 8 759 293 237 26 0 chr11 22876691 22876767 -98967089 + ID2 SINE ID 3 80 -3 8 759 1237 80 73 11 chr11 22877333 22877510 -98966346 + B2_Mm2 SINE B2 1 188 -7 8 759 786 230 72 31 chr11 22877512 22877705 -98966151 - B3 SINE B2 -15 201 1 8 759 344 298 11 11 chr11 22877707 22877802 -98966054 - B4A SINE B4 -196 96 2 8 759 449 254 22 0 chr11 22877978 22878085 -98965771 + B1_Mur4 SINE Alu 6 113 -7 8 759 311 299 187 61 chr11 22878858 22878936 -98964920 + B4A SINE B4 2 154 -138 8 759 560 168 37 0 chr11 22878936 22879043 -98964813 + PB1D9 SINE Alu 10 120 0 8 759 311 299 187 61 chr11 22879043 22879104 -98964752 + B4A SINE B4 155 278 -14 8 759 796 243 21 11 chr11 22879193 22879380 -98964476 + B3A SINE B2 1 189 -9 8 759 592 174 91 0 chr11 22879540 22879661 -98964195 + B1_Mus1 SINE Alu 10 141 -7 8 759 517 250 58 0 chr11 22879995 22880115 -98963741 - RSINE1 SINE B4 -36 129 3 8 759 515 290 78 43 chr11 22880115 22880335 -98963521 - B4A SINE B4 -62 230 3 8 759 499 267 52 0 chr11 22880360 22880495 -98963361 - B3 SINE B2 0 216 75 8 759 437 236 36 18 chr11 22880510 22880622 -98963234 + MER33 DNA MER1_type 12 125 -199 8 759 694 240 211 0 chr11 22880622 22880797 -98963059 + B3 SINE B2 1 212 -4 8 759 573 265 43 53 chr11 22880934 22881141 -98962715 + B4A SINE B4 47 251 -41 8 759 368 226 55 73 chr11 22881219 22881329 -98962527 + PB1D10 SINE Alu 1 108 -9 8 759 321 162 514 14 chr11 22881344 22881488 -98962368 + B3 SINE B2 1 216 0 8 759 591 203 27 27 chr11 22881688 22881835 -98962021 - B1_Mur2 SINE Alu 0 149 3 8 759 558 304 88 0 chr11 22882935 22883116 -98960740 + B3A SINE B2 2 198 0 8 759 572 305 114 0 chr11 22883131 22883393 -98960463 + L1MB7 LINE L1 5874 6165 -19 8 759 1130 83 0 0 chr11 22883435 22883580 -98960276 + B1_Mm SINE Alu 3 147 0 8 759 433 193 79 3 chr11 22883595 22883698 -98960158 + PB1D9 SINE Alu 13 120 0 8 759 26 0 0 0 chr11 22883698 22883724 -98960132 + AT_rich Low_complexity Low_complexity 1 26 0 8 759 1536 217 159 0 chr11 22883891 22884288 -98959568 - RMER19B LTR ERVK -442 460 1 8 759 309 279 0 0 chr11 22884300 22884368 -98959488 - ID2 SINE ID -15 68 1 8 759 1344 98 11 0 chr11 22884525 22884709 -98959147 + B2_Mm1t SINE B2 1 186 -7 8 759 473 250 46 0 chr11 22884719 22884827 -98959029 + B1_Mur1 SINE Alu 3 115 -34 8 759 2086 216 29 61 chr11 22884951 22885475 -98958381 - RLTR18B LTR ERVK -5 507 1 8 759 1115 182 94 46 chr11 22885530 22885914 -98957942 - RMER16 LTR ERVK 0 533 1 8 759 514 259 72 80 chr11 22885970 22886154 -98957702 - MER20B DNA MER1_type -314 469 276 8 759 957 232 5 19 chr11 22886154 22886361 -98957495 + B3 SINE B2 1 204 -12 8 759 514 259 72 80 chr11 22886361 22886440 -98957416 - MER20B DNA MER1_type -508 275 208 8 759 248 0 31 0 chr11 22886474 22886506 -98957350 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 759 1166 82 0 0 chr11 22886518 22886665 -98957191 - B1_Mus1 SINE Alu -1 147 1 8 759 359 191 12 19 chr11 22886967 22887053 -98956803 + B1_Mur4 SINE Alu 34 141 -9 8 759 234 62 0 0 chr11 22887055 22887087 -98956769 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 759 225 244 0 0 chr11 22887261 22887306 -98956550 - B3A SINE B2 -109 89 45 8 759 792 236 18 45 chr11 22887861 22888083 -98955773 - B3 SINE B2 0 216 1 8 759 1115 44 7 7 chr11 22888302 22888439 -98955417 + B1_Mm SINE Alu 1 137 -10 8 759 315 0 0 0 chr11 22888439 22888474 -98955382 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 759 241 304 69 0 chr11 22888945 22889047 -98954809 - MER34 LTR ERV1 -335 207 99 8 759 1108 207 112 128 chr11 22889050 22889095 -98954761 - ORR1D2 LTR MaLR 0 370 328 8 759 603 187 62 35 chr11 22889095 22889239 -98954617 + B1_Mur4 SINE Alu 2 149 -1 8 759 1108 207 112 128 chr11 22889239 22889569 -98954287 - ORR1D2 LTR MaLR -43 327 1 8 759 191 324 81 0 chr11 22889948 22890022 -98953834 + MIRb SINE MIR 111 190 -78 8 759 21 57 0 0 chr11 22890778 22890813 -98953043 + GC_rich Low_complexity Low_complexity 1 35 0 8 759 561 199 67 67 chr11 22891957 22892135 -98951721 - B2_Mm2 SINE B2 -17 178 1 8 759 922 193 14 14 chr11 22892135 22892345 -98951511 - MTC LTR MaLR -211 210 1 8 759 189 0 0 0 chr11 22893564 22893585 -98950271 + (T)n Simple_repeat Simple_repeat 1 21 0 8 759 314 262 3 0 chr11 22893700 22893768 -98950088 - B1F SINE Alu -47 70 1 8 759 1170 56 7 0 chr11 22895044 22895187 -98948669 + B1_Mus2 SINE Alu 2 145 -2 8 759 347 234 92 18 chr11 22895383 22895492 -98948364 - ID_B1 SINE B4 -106 118 2 8 759 970 106 14 7 chr11 22895563 22895705 -98948151 - B1_Mus1 SINE Alu -4 144 2 8 759 587 222 26 0 chr11 22896642 22896759 -98947097 + B1_Mm SINE Alu 1 120 -27 8 759 565 233 15 0 chr11 22897217 22897350 -98946506 + B1F SINE Alu 11 145 -4 8 759 378 0 0 0 chr11 22897937 22897979 -98945877 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 759 270 177 0 127 chr11 22898446 22898517 -98945339 + PB1D10 SINE Alu 56 117 0 8 759 1060 109 107 22 chr11 22898551 22898729 -98945127 + B2_Mm2 SINE B2 1 193 -2 8 759 529 235 63 49 chr11 22898737 22898880 -98944976 + B1_Mur4 SINE Alu 1 145 -5 8 759 603 247 11 78 chr11 22899244 22899424 -98944432 - B3A SINE B2 -22 176 9 8 759 275 262 83 0 chr11 22899588 22899672 -98944184 + B1F SINE Alu 8 98 -51 8 759 648 260 51 15 chr11 22899693 22899888 -98943968 + B3 SINE B2 15 216 0 8 759 345 269 185 11 chr11 22899923 22900107 -98943749 + ID_B1 SINE B4 1 216 -8 8 759 427 255 37 28 chr11 22900602 22900711 -98943145 + PB1D9 SINE Alu 3 112 -8 8 759 398 228 268 6 chr11 22901051 22901219 -98942637 - B3 SINE B2 -4 212 1 8 759 180 0 0 0 chr11 22901713 22901733 -98942123 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 759 315 263 117 29 chr11 22901734 22901871 -98941985 - RSINE1 SINE B4 -15 150 2 8 759 332 263 69 20 chr11 22903525 22903626 -98940230 - ID_B1 SINE B4 -67 157 52 8 759 252 314 65 16 chr11 22903665 22903788 -98940068 - ID_B1 SINE B4 -2 222 94 8 759 252 222 74 0 chr11 22903884 22903938 -98939918 - RSINE1 SINE B4 -63 102 45 8 759 246 208 0 38 chr11 22903982 22904041 -98939815 + B1_Mus2 SINE Alu 1 57 -92 8 759 266 277 157 69 chr11 22904043 22904202 -98939654 - ORR1D2 LTR MaLR -138 232 60 8 759 1841 197 102 47 chr11 22905558 22906031 -98937825 + RLTR18B LTR ERVK 3 501 -11 8 759 243 279 127 0 chr11 22906338 22906417 -98937439 - MLT1A0 LTR MaLR -271 94 6 8 759 678 81 183 61 chr11 22906868 22906999 -98936857 - B1_Mus1 SINE Alu 0 148 2 8 759 305 143 0 0 chr11 22909224 22909273 -98934583 - B3 SINE B2 -164 52 4 8 759 547 188 0 0 chr11 22909396 22909492 -98934364 - B3 SINE B2 -110 106 11 8 759 601 147 157 37 chr11 22909508 22909642 -98934214 - B1_Mur4 SINE Alu 0 150 1 8 759 296 232 48 48 chr11 22909708 22909812 -98934044 - ID_B1 SINE B4 -117 107 4 8 759 608 234 0 14 chr11 22909815 22909958 -98933898 - ID_B1 SINE B4 0 224 84 8 759 419 295 9 9 chr11 22910425 22910531 -98933325 + B4A SINE B4 55 160 -132 8 759 362 236 9 70 chr11 22910879 22910993 -98932863 + RMER10B LTR ERVL 292 398 0 8 759 473 203 0 6 chr11 22911007 22911025 -98932831 + (CA)n Simple_repeat Simple_repeat 2 19 0 8 759 288 0 0 0 chr11 22911025 22911057 -98932799 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 759 473 196 0 8 chr11 22911057 22911291 -98932565 + (CA)n Simple_repeat Simple_repeat 1 232 0 9 759 411 21 0 0 chr11 22911291 22911339 -98932517 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 759 257 177 0 12 chr11 22911339 22911353 -98932503 + (CA)n Simple_repeat Simple_repeat 2 15 0 9 759 367 230 48 1 chr11 22911834 22911950 -98931906 + B1F SINE Alu 24 135 -14 9 759 253 235 20 0 chr11 22911963 22912014 -98931842 + PB1 SINE Alu 3 54 -73 9 759 387 0 0 0 chr11 22912045 22912088 -98931768 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 9 759 584 239 39 84 chr11 22912108 22912263 -98931593 - B1_Mur1 SINE Alu 0 149 2 9 759 459 274 0 31 chr11 22912267 22912395 -98931461 - ID_B1 SINE B4 -17 207 84 9 759 291 325 191 18 chr11 22913168 22913503 -98930353 - L2a LINE L2 -1 3425 3033 9 759 692 166 3 16 chr11 22913522 22913659 -98930197 - B1_Mus1 SINE Alu -1 147 13 9 759 437 278 29 21 chr11 22913693 22913868 -98929988 - B3A SINE B2 -11 205 38 9 759 762 279 0 23 chr11 22914062 22914238 -98929618 + B3A SINE B2 19 190 -8 9 759 225 94 0 0 chr11 22914241 22914273 -98929583 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 9 759 21 0 0 0 chr11 22914564 22914585 -98929271 + AT_rich Low_complexity Low_complexity 1 21 0 9 759 285 29 0 0 chr11 22914641 22914675 -98929181 + (TA)n Simple_repeat Simple_repeat 1 34 0 9 759 632 265 32 86 chr11 22914748 22914934 -98928922 - B4 SINE B4 -115 177 2 9 759 662 183 22 37 chr11 22915442 22915578 -98928278 + B1_Mur1 SINE Alu 1 134 -15 9 759 665 166 319 0 chr11 22916105 22916268 -98927588 - B3 SINE B2 0 216 2 9 759 1640 254 70 17 chr11 22916403 22916935 -98926921 - RLTR20A2 LTR ERVK -12 566 7 9 759 382 197 0 0 chr11 22916939 22917010 -98926846 - B1F SINE Alu -71 78 8 9 759 417 125 0 0 chr11 22917011 22917072 -98926784 - ID_B1 SINE B4 0 224 164 9 759 3206 98 2 28 chr11 22917072 22917568 -98926288 + RLTR1C LTR ERV1 1 483 -20 9 759 298 297 51 0 chr11 22917571 22917584 -98926272 - PB1D10 SINE Alu -11 106 67 9 759 340 242 0 0 chr11 22917584 22917650 -98926206 - ID_B1 SINE B4 -53 171 106 9 759 298 297 51 0 chr11 22917650 22917668 -98926188 - PB1D10 SINE Alu -11 66 1 9 759 510 195 0 48 chr11 22917679 22917798 -98926058 - B1_Mur4 SINE Alu 0 150 38 9 759 298 137 0 0 chr11 22917798 22917849 -98926007 - BGLII_A LTR ERVK 0 445 395 9 759 927 216 11 36 chr11 22917850 22918128 -98925728 - BGLII_B LTR ERVK 0 441 171 9 759 257 158 0 0 chr11 22918197 22918235 -98925621 - B1_Mus2 SINE Alu -108 39 2 9 759 23 33 0 0 chr11 22918254 22918284 -98925572 + AT_rich Low_complexity Low_complexity 1 30 0 9 759 1015 134 37 5 chr11 22918356 22918544 -98925312 - B2_Mm2 SINE B2 0 195 2 9 759 1390 172 14 31 chr11 22918685 22919228 -98924628 - RLTR11B LTR ERVK -14 513 3 9 759 236 297 151 21 chr11 22919379 22919472 -98924384 - PB1D10 SINE Alu -12 105 1 9 759 201 239 111 14 chr11 22919782 22919854 -98924002 + MIR3 SINE MIR 116 194 -14 9 759 930 19 0 0 chr11 22921706 22921814 -98922042 + (TTTCC)n Simple_repeat Simple_repeat 5 112 0 9 759 246 123 35 17 chr11 22922094 22922152 -98921704 + (CATA)n Simple_repeat Simple_repeat 1 59 0 9 759 351 0 0 0 chr11 22922708 22922747 -98921109 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 759 618 231 7 33 chr11 22922937 22923089 -98920767 - B1_Mus1 SINE Alu 0 148 1 9 759 621 219 200 0 chr11 22923930 22924090 -98919766 - B3 SINE B2 -15 201 10 9 759 253 302 70 40 chr11 22924259 22924359 -98919497 - MIRb SINE MIR -119 149 47 9 759 481 249 96 57 chr11 22924440 22924649 -98919207 - ID_B1 SINE B4 -7 217 1 9 759 1090 81 0 42 chr11 22925424 22925592 -98918264 - B2_Mm2 SINE B2 -34 161 1 9 759 189 0 0 0 chr11 22926054 22926075 -98917781 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 759 803 250 46 0 chr11 22926075 22926271 -98917585 - ID_B1 SINE B4 -19 205 1 9 759 420 71 0 0 chr11 22926419 22926475 -98917381 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 759 605 195 106 0 chr11 22926552 22926675 -98917181 + B1_Mur2 SINE Alu 3 138 -11 9 759 241 320 13 13 chr11 22927210 22927286 -98916570 - ID4 SINE ID 0 83 8 9 759 445 248 31 47 chr11 22927581 22927708 -98916148 - B1F1 SINE Alu -1 148 24 9 759 4586 44 2 0 chr11 22927789 22928332 -98915524 - L1_Mus1 LINE L1 0 6567 6024 9 759 310 287 187 12 chr11 22928483 22928740 -98915116 - L1ME3B LINE L1 -336 5904 5603 9 759 237 218 0 0 chr11 22930304 22930382 -98913474 + T-rich Low_complexity Low_complexity 1 78 0 9 759 833 164 7 14 chr11 22930382 22930530 -98913326 - B1_Mus1 SINE Alu 0 148 2 9 759 274 264 36 117 chr11 22930417 22930554 -98913302 - MT2B LTR ERVL -337 264 139 9 759 625 280 60 0 chr11 22930557 22930725 -98913131 - B3A SINE B2 -18 180 3 9 759 1080 49 0 0 chr11 22930838 22930981 -98912875 - B1_Mus1 SINE Alu 0 148 6 9 759 570 250 74 32 chr11 22931025 22931215 -98912641 - B3 SINE B2 0 216 19 9 759 447 260 10 0 chr11 22932038 22932134 -98911722 + B1F SINE Alu 22 118 -31 9 759 311 269 24 82 chr11 22932789 22932874 -98910982 + ID4 SINE ID 4 83 0 9 759 758 100 0 72 chr11 22932899 22933093 -98910763 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 759 324 120 0 0 chr11 22933269 22933319 -98910537 + (CATA)n Simple_repeat Simple_repeat 2 51 0 9 759 455 282 140 41 chr11 22933544 22934080 -98909776 - L1MC4 LINE L1 -664 7378 6790 9 759 846 170 13 13 chr11 22934241 22934390 -98909466 + B1_Mur4 SINE Alu 1 149 -1 9 759 273 151 0 0 chr11 22934442 22934495 -98909361 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 9 759 404 318 23 0 chr11 22934509 22934638 -98909218 + ID_B1 SINE B4 83 214 -10 9 759 455 270 261 11 chr11 22934646 22934822 -98909034 + ID_B1 SINE B4 3 222 -2 9 759 508 210 180 0 chr11 22934950 22935109 -98908747 - B3 SINE B2 -8 190 2 9 759 628 281 29 81 chr11 22935162 22935371 -98908485 - ID_B1 SINE B4 -25 199 2 9 759 1191 49 0 0 chr11 22935470 22935612 -98908244 + B1_Mus1 SINE Alu 1 142 -6 9 759 945 124 12 12 chr11 22935614 22935785 -98908071 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 9 759 586 92 0 22 chr11 22935799 22935884 -98907972 + B2_Mm2 SINE B2 1 83 -112 9 759 3273 118 86 83 chr11 22935884 22936621 -98907235 - RMER17A LTR ERVK 0 751 13 9 759 756 87 79 0 chr11 22936630 22936757 -98907099 + B2_Mm2 SINE B2 58 194 -1 9 759 364 256 11 22 chr11 22936759 22936851 -98907005 + PB1D10 SINE Alu 1 91 -26 9 759 2251 113 98 110 chr11 22936917 22937231 -98906625 - RLTR33 LTR ERVK -186 492 180 9 759 1198 61 7 0 chr11 22937231 22937378 -98906478 - B1_Mus1 SINE Alu 0 148 1 9 759 2251 113 98 110 chr11 22937378 22937561 -98906295 - RLTR33 LTR ERVK -499 179 1 9 760 2288 146 94 23 chr11 22937695 22938055 -98905801 + RMER1B Other Other 597 987 -79 9 760 3919 92 23 9 chr11 22938055 22938611 -98905245 + LTRIS2 LTR ERV1 1 564 0 9 760 2288 146 94 23 chr11 22938611 22938686 -98905170 + RMER1B Other Other 988 1063 -3 9 760 914 162 0 0 chr11 22938711 22938847 -98905009 + B1_Mus2 SINE Alu 1 136 -11 9 760 207 132 114 29 chr11 22939761 22939831 -98904025 - L2c LINE L2 -44 3343 3268 9 760 24 0 0 0 chr11 22940739 22940763 -98903093 + AT_rich Low_complexity Low_complexity 1 24 0 9 760 21 57 0 0 chr11 22940855 22940890 -98902966 + AT_rich Low_complexity Low_complexity 1 35 0 9 760 2249 106 168 3 chr11 22941139 22941508 -98902348 - Lx4A LINE L1 0 7058 6629 9 760 1479 67 5 20 chr11 22941526 22941723 -98902133 - B2_Mm2 SINE B2 0 195 2 9 760 362 266 72 18 chr11 22942152 22942263 -98901593 - PB1 SINE Alu -1 126 10 9 760 833 98 7 0 chr11 22942381 22942524 -98901332 + (TC)n Simple_repeat Simple_repeat 2 145 0 9 760 297 0 0 0 chr11 22942524 22942556 -98901300 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 760 234 179 0 0 chr11 22942607 22942663 -98901193 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 760 449 296 60 24 chr11 22942671 22942837 -98901019 - B4A SINE B4 -2 290 119 9 760 556 151 11 0 chr11 22942839 22942932 -98900924 - B1_Mur4 SINE Alu -12 138 45 9 760 380 299 31 0 chr11 22942927 22943024 -98900832 - B4A SINE B4 -192 100 1 9 760 242 169 0 92 chr11 22943699 22943764 -98900092 - PB1D9 SINE Alu 0 120 62 9 760 698 203 23 0 chr11 22943805 22943938 -98899918 + B1_Mus1 SINE Alu 1 136 -12 9 760 441 0 0 0 chr11 22943938 22943987 -98899869 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 9 760 478 300 8 0 chr11 22944114 22944234 -98899622 - B1_Mur1 SINE Alu -20 129 9 9 760 460 106 24 0 chr11 22944327 22944412 -98899444 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 760 523 246 94 16 chr11 22944428 22944556 -98899300 - B3 SINE B2 -1 215 78 9 760 401 255 9 62 chr11 22944811 22944904 -98898952 + PB1D10 SINE Alu 2 95 -22 9 760 2750 53 59 0 chr11 22944904 22945243 -98898613 - RLTR10D LTR ERVK 0 359 1 9 760 401 255 9 62 chr11 22945243 22945262 -98898594 + PB1D10 SINE Alu 96 108 -9 9 760 368 103 17 0 chr11 22945265 22945323 -98898533 + B3 SINE B2 1 59 -157 9 760 894 132 21 0 chr11 22945366 22945510 -98898346 - B1_Mus1 SINE Alu 0 148 2 9 760 22 35 0 0 chr11 22945602 22945631 -98898225 + AT_rich Low_complexity Low_complexity 1 29 0 9 760 363 217 83 12 chr11 22945631 22945715 -98898141 - 7SK RNA RNA -183 148 59 9 760 1092 178 58 0 chr11 22945734 22945925 -98897931 - B3 SINE B2 -10 206 5 9 760 198 0 0 0 chr11 22945948 22945970 -98897886 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 760 541 295 88 5 chr11 22946233 22946427 -98897429 - B3 SINE B2 -6 210 1 1 760 240 279 69 11 chr11 22946541 22946628 -98897228 + PB1D10 SINE Alu 7 98 -19 1 760 252 258 45 0 chr11 22947166 22947232 -98896624 + Tigger8 DNA MER2_type 343 411 -255 1 760 374 332 81 42 chr11 22948862 22949098 -98894758 - MLT1F1 LTR MaLR -322 247 3 1 760 414 248 16 71 chr11 22950237 22950363 -98893493 - PB1D9 SINE Alu 0 120 2 1 760 230 362 0 21 chr11 22950728 22950745 -98893111 + B4 SINE B4 70 84 -208 1 760 584 229 26 59 chr11 22950745 22950898 -98892958 + B1_Mur1 SINE Alu 2 149 0 1 760 358 275 140 0 chr11 22951209 22951380 -98892476 + MLT1A1 LTR MaLR 212 406 -2 1 760 851 37 0 0 chr11 22951421 22951529 -98892327 + B1_Mus1 SINE Alu 31 138 -10 1 760 279 0 0 0 chr11 22951529 22951560 -98892296 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 760 298 132 0 0 chr11 22951894 22951947 -98891909 - URR1A DNA MER1_type -93 133 81 1 760 432 0 0 0 chr11 22952616 22952664 -98891192 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 760 803 95 16 0 chr11 22952827 22952953 -98890903 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 1 760 1157 62 0 27 chr11 22952953 22953102 -98890754 - B1_Mus2 SINE Alu -2 145 1 1 760 362 343 152 22 chr11 22953467 22953783 -98890073 + LTR33 LTR ERVL 139 495 -20 1 760 1189 68 0 0 chr11 22954670 22954817 -98889039 - B1_Mus1 SINE Alu 0 148 2 1 760 400 111 355 18 chr11 22955013 22955123 -98888733 - B2_Mm2 SINE B2 -2 193 47 1 760 1148 107 6 0 chr11 22955192 22955361 -98888495 - B2_Mm1t SINE B2 -22 171 2 1 760 313 293 239 0 chr11 22955517 22955587 -98888269 - B4A SINE B4 0 292 194 1 760 216 0 0 0 chr11 22955587 22955611 -98888245 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 760 439 264 0 0 chr11 22955620 22955707 -98888149 - B1_Mur3 SINE Alu -62 87 1 1 760 298 258 10 92 chr11 22955622 22955720 -98888136 - MT2B LTR ERVL -361 240 151 1 760 851 192 64 0 chr11 22955739 22955911 -98887945 - B3 SINE B2 -25 191 9 1 760 433 269 209 5 chr11 22955913 22956100 -98887756 - B4 SINE B4 -63 229 5 1 760 1972 103 31 28 chr11 22956130 22956450 -98887406 + ORR1A4 LTR MaLR 1 321 -8 1 760 1095 278 136 57 chr11 22956594 22958185 -98885671 - L1MD LINE L1 -1951 4195 2439 1 760 360 216 13 13 chr11 22958271 22958346 -98885510 - RSINE1 SINE B4 -83 82 8 1 760 809 175 0 34 chr11 22958361 22958375 -98885481 - B1_Mus1 SINE Alu 0 148 136 1 760 183 42 0 0 chr11 22958375 22958399 -98885457 + (TATG)n Simple_repeat Simple_repeat 1 24 0 1 760 809 175 0 34 chr11 22958399 22958532 -98885324 - B1_Mus1 SINE Alu -13 135 6 1 760 375 23 0 0 chr11 22958549 22958593 -98885263 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 760 273 275 83 0 chr11 22958654 22958763 -98885093 - L1MDa LINE L1 -3759 2778 2661 1 760 700 235 139 56 chr11 22958920 22959275 -98884581 + RMER20B LTR ERVK 124 568 -59 1 760 3163 58 5 8 chr11 22959768 22960165 -98883691 + MTA_Mm LTR MaLR 1 396 0 1 760 680 35 11 0 chr11 22960273 22960360 -98883496 + (TTTCC)n Simple_repeat Simple_repeat 4 91 0 1 760 230 188 88 59 chr11 22960399 22960467 -98883389 - L1MDa LINE L1 -4758 1875 1806 1 760 848 182 0 7 chr11 22961339 22961488 -98882368 - B1_Mus1 SINE Alu 0 148 1 1 760 505 333 24 79 chr11 22961585 22961875 -98881981 + MT2A LTR ERVL 159 432 -101 1 760 286 284 32 0 chr11 22961890 22961985 -98881871 + MLT1I LTR MaLR 313 410 -1 1 760 364 270 6 21 chr11 22962084 22962201 -98881655 + PB1D10 SINE Alu 5 120 0 1 760 398 250 39 0 chr11 22962509 22962613 -98881243 - B1F2 SINE Alu -5 144 37 1 760 280 230 195 45 chr11 22962947 22963147 -98880709 - Tigger7 DNA MER2_type -2 2489 2260 1 760 420 233 12 0 chr11 22963143 22963229 -98880627 - 5S rRNA rRNA -31 90 4 1 760 361 220 69 10 chr11 22963235 22963336 -98880520 - Tigger7 DNA MER2_type -230 2261 2155 1 760 417 146 77 22 chr11 22963324 22963415 -98880441 - Tigger7 DNA MER2_type -1905 586 491 1 760 357 302 19 0 chr11 22963425 22963531 -98880325 - ID_B1 SINE B4 -37 187 80 1 760 587 209 221 22 chr11 22963555 22963736 -98880120 - Tigger7 DNA MER2_type -2026 465 249 1 760 213 267 0 91 chr11 22963784 22963850 -98880006 + B4A SINE B4 85 144 -148 1 760 338 247 108 0 chr11 22963805 22963898 -98879958 + PB1D10 SINE Alu 15 117 0 1 760 267 292 21 0 chr11 22963984 22964080 -98879776 - Tigger7 DNA MER2_type -2249 242 145 1 760 1746 156 69 12 chr11 22964085 22964514 -98879342 - RMER17C LTR ERVK -519 439 16 1 760 1090 88 0 7 chr11 22964516 22964664 -98879192 + B1_Mus2 SINE Alu 1 147 0 1 760 475 283 29 0 chr11 22964693 22964831 -98879025 - Tigger7 DNA MER2_type -2349 142 1 1 760 277 305 142 9 chr11 22965469 22965575 -98878281 - PB1 SINE Alu -2 125 6 1 760 528 238 47 39 chr11 22965790 22965917 -98877939 + RSINE1 SINE B4 3 130 -35 1 760 382 312 13 40 chr11 22966304 22966454 -98877402 - RSINE1 SINE B4 -11 154 9 1 760 468 257 26 0 chr11 22966570 22966683 -98877173 - B3A SINE B2 -80 118 3 1 760 225 224 102 0 chr11 22967287 22967391 -98876465 + B1F SINE Alu 1 148 -1 1 760 297 224 30 0 chr11 22968287 22968354 -98875502 + PB1D7 SINE Alu 45 113 -7 1 760 249 77 0 25 chr11 22969210 22969250 -98874606 - RLTR10C LTR ERVK 0 292 254 1 760 2615 24 6 0 chr11 22969236 22969565 -98874291 - RLTR10C LTR ERVK -105 331 1 1 760 1176 68 0 0 chr11 22969597 22969743 -98874113 - B1_Mus2 SINE Alu 0 147 2 1 760 541 232 0 0 chr11 22969765 22969877 -98873979 + RSINE1 SINE B4 3 114 -51 1 760 288 271 0 14 chr11 22969934 22970005 -98873851 + ID4 SINE ID 1 70 -13 1 760 615 60 9 107 chr11 22970009 22970114 -98873742 + B1_Mur4 SINE Alu 45 139 -11 1 760 255 93 0 0 chr11 22970114 22970157 -98873699 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 760 423 274 0 0 chr11 22970294 22970469 -98873387 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 760 322 316 83 51 chr11 22970470 22970627 -98873229 - RSINE1 SINE B4 0 165 4 1 760 28 0 0 0 chr11 22970630 22970658 -98873198 + AT_rich Low_complexity Low_complexity 1 28 0 1 760 357 281 29 81 chr11 22970658 22970768 -98873088 - RSINE1 SINE B4 0 165 62 1 760 2058 216 20 82 chr11 22970768 22971314 -98872542 - RLTR18B LTR ERVK 0 512 1 1 760 357 281 29 81 chr11 22971314 22971377 -98872479 - RSINE1 SINE B4 -104 61 1 1 760 263 26 51 0 chr11 22971446 22971485 -98872371 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 760 1226 54 0 0 chr11 22971488 22971635 -98872221 - B1_Mus2 SINE Alu 0 147 1 1 760 321 139 347 0 chr11 22971659 22971731 -98872125 + PB1D9 SINE Alu 6 102 -18 1 760 929 242 101 42 chr11 22971756 22972114 -98871742 - MTEa LTR MaLR 0 379 1 1 760 355 216 51 51 chr11 22972114 22972231 -98871625 - MTEa-int LTR MaLR 0 1580 1464 1 760 594 128 0 0 chr11 22972290 22972384 -98871472 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1 760 759 135 265 0 chr11 22972402 22972572 -98871284 - B3 SINE B2 0 216 2 1 760 817 263 313 4 chr11 22972573 22973024 -98870832 - MTEa-int LTR MaLR -988 592 3 1 760 229 361 22 56 chr11 22973096 22973275 -98870581 + RMER4B LTR ERVK 14 186 -399 1 760 406 267 103 0 chr11 22973432 22973597 -98870259 - MTEb LTR MaLR -5 374 193 1 760 604 287 99 25 chr11 22973822 22974065 -98869791 - MTEa LTR MaLR -116 263 3 1 760 332 253 13 0 chr11 22974121 22974196 -98869660 - ID2 SINE ID -2 81 6 1 760 317 202 95 57 chr11 22974265 22974370 -98869486 - PB1D10 SINE Alu -2 115 7 1 760 350 238 58 29 chr11 22975103 22975207 -98868649 + PB1D10 SINE Alu 1 107 -10 1 760 261 0 0 0 chr11 22975207 22975236 -98868620 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 760 749 241 28 69 chr11 22976057 22976275 -98867581 - B3A SINE B2 -7 209 1 1 760 312 381 27 20 chr11 22976492 22976642 -98867214 + RSINE1 SINE B4 1 151 -14 1 760 350 239 9 0 chr11 22976659 22976772 -98867084 + CT-rich Low_complexity Low_complexity 3 116 0 1 760 911 209 6 0 chr11 22976934 22977111 -98866745 - ORR1C1 LTR MaLR 0 378 201 1 760 438 167 13 0 chr11 22977115 22977193 -98866663 + Lx8 LINE L1 6786 6864 -609 1 760 427 321 73 12 chr11 22977352 22977516 -98866340 + Lx8 LINE L1 6875 7048 -425 1 760 235 254 121 0 chr11 22977763 22977899 -98865957 + L1MD1 LINE L1 5872 6036 -206 1 760 365 306 36 9 chr11 22977908 22978011 -98865845 + PB1D10 SINE Alu 1 107 -10 1 760 258 32 0 0 chr11 22978011 22978042 -98865814 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 760 358 228 223 48 chr11 22978282 22978448 -98865408 + L1MD1 LINE L1 6038 6232 -10 1 760 219 36 0 0 chr11 22979130 22979158 -98864698 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 760 328 205 0 49 chr11 22979882 22979964 -98863892 + PB1D9 SINE Alu 22 99 -21 1 760 228 279 184 0 chr11 22980003 22980139 -98863717 - Lx8 LINE L1 -13 7460 7300 1 760 332 293 30 20 chr11 22980158 22980259 -98863597 - Lx8 LINE L1 -339 7134 7033 1 760 2455 109 36 129 chr11 22980284 22980756 -98863100 - RLTR23 LTR ERV1 -2 428 1 1 760 523 221 176 51 chr11 22980765 22980941 -98862915 - Lx8 LINE L1 -385 7088 6891 1 760 1977 231 62 0 chr11 22980913 22981368 -98862488 - Lx8 LINE L1 -748 6725 6243 1 760 1419 85 0 16 chr11 22981368 22981559 -98862297 + B2_Mm2 SINE B2 2 189 -6 1 760 245 88 0 0 chr11 22981922 22981956 -98861900 - RMER17C LTR ERVK -375 35 2 1 760 304 274 18 9 chr11 22981959 22982073 -98861783 - Lx8 LINE L1 -12 5835 5721 1 760 677 242 37 32 chr11 22982073 22982240 -98861616 + B3 SINE B2 1 169 -47 1 760 237 65 0 0 chr11 22982240 22982271 -98861585 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1 760 677 242 37 32 chr11 22982271 22982291 -98861565 + B3 SINE B2 170 189 -27 1 760 259 189 83 0 chr11 22982294 22982358 -98861498 - Lx8 LINE L1 -1699 5774 5705 1 760 762 250 11 26 chr11 22982402 22982591 -98861265 - B3 SINE B2 -1 215 30 1 760 355 216 14 0 chr11 22982628 22982702 -98861154 - RLTR25A LTR ERVK -45 983 909 1 760 1089 23 0 0 chr11 22982721 22982853 -98861003 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 760 3563 156 21 54 chr11 22982853 22983546 -98860310 - RLTR25A LTR ERVK -218 885 216 1 760 1451 62 5 45 chr11 22983546 22983748 -98860108 - B2_Mm2 SINE B2 0 195 2 1 760 3563 156 21 54 chr11 22983748 22983813 -98860043 - RLTR25A LTR ERVK -888 215 152 1 760 2749 74 18 13 chr11 22983837 22983956 -98859900 - MTB LTR MaLR 0 400 286 1 760 2448 98 188 0 chr11 22983956 22984404 -98859452 + RLTR47_MM LTR ERV1 1 532 0 1 760 2749 74 18 13 chr11 22984404 22984682 -98859174 - MTB LTR MaLR -115 285 1 1 760 6204 90 50 79 chr11 22984682 22985356 -98858500 - MTB-int LTR MaLR 0 1098 452 1 760 3164 63 10 2 chr11 22985356 22985398 -98858458 + MTB LTR MaLR 1 42 -358 1 760 180 0 0 0 chr11 22985398 22985418 -98858438 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 760 3164 63 10 2 chr11 22985418 22985772 -98858084 + MTB LTR MaLR 43 399 -1 1 760 6691 90 35 111 chr11 22985772 22986864 -98856992 + MTB-int LTR MaLR 1 1051 -47 1 760 1575 38 5 11 chr11 22986864 22987052 -98856804 + B2_Mm1a SINE B2 1 187 -6 1 760 6691 90 35 111 chr11 22987052 22987145 -98856711 + MTB-int LTR MaLR 1052 1096 -2 1 760 3088 68 13 2 chr11 22987147 22987543 -98856313 + MTB LTR MaLR 1 400 0 1 760 6204 90 50 79 chr11 22987543 22987995 -98855861 - MTB-int LTR MaLR -647 451 2 1 760 898 67 0 0 chr11 22987995 22988115 -98855741 - MTB LTR MaLR 0 400 281 1 760 966 68 0 0 chr11 22988111 22988244 -98855612 - MTB LTR MaLR -264 136 4 1 760 557 130 174 0 chr11 22988260 22988375 -98855481 - RLTR25A LTR ERVK -962 141 7 1 760 276 281 2 18 chr11 22988399 22988508 -98855348 - L1_Mur3 LINE L1 -1155 4725 4615 1 760 990 206 65 0 chr11 22988529 22988728 -98855128 - B3 SINE B2 0 216 5 1 760 711 237 115 9 chr11 22988781 22988998 -98854858 - L1_Mur3 LINE L1 -1976 3904 3665 1 760 389 82 16 0 chr11 22988998 22989059 -98854797 + ORR1A1 LTR MaLR 1 62 -284 1 760 1273 79 11 22 chr11 22989059 22989241 -98854615 + L1_Mus1 LINE L1 6388 6567 0 1 760 386 21 0 0 chr11 22989250 22989297 -98854559 + ORR1A1 LTR MaLR 292 338 -8 1 760 689 250 0 35 chr11 22989449 22989594 -98854262 - B1_Mur1 SINE Alu -9 140 1 1 760 1973 192 76 23 chr11 22989918 22990289 -98853567 - MT2A LTR ERVL -40 561 92 1 760 351 0 0 0 chr11 22990289 22990328 -98853528 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 760 1973 185 77 21 chr11 22990328 22990407 -98853449 - MT2A LTR ERVL -442 91 8 1 760 243 0 0 0 chr11 22990426 22990453 -98853403 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 760 22 35 0 0 chr11 22990660 22990689 -98853167 + AT_rich Low_complexity Low_complexity 1 29 0 1 760 252 0 0 0 chr11 22990689 22990717 -98853139 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 760 381 228 59 44 chr11 22990717 22990848 -98853008 - RSINE1 SINE B4 -24 141 11 1 760 465 283 62 108 chr11 22992083 22992388 -98851468 + B4 SINE B4 2 292 0 1 760 203 288 170 9 chr11 22992528 22992640 -98851216 + MIRb SINE MIR 109 238 -30 1 760 563 305 157 29 chr11 22992641 22993050 -98850806 - MT2A LTR ERVL -9 524 64 1 760 251 312 0 0 chr11 22993057 22993134 -98850722 - MTE2b LTR MaLR -282 97 21 1 760 234 301 102 102 chr11 22993618 22993755 -98850101 - MER5B DNA MER1_type -7 171 35 1 760 571 277 34 34 chr11 22993762 22993971 -98849885 + L1MA4A LINE L1 5569 5777 -514 1 760 688 241 56 28 chr11 22994033 22994319 -98849537 - RLTR15 LTR ERVK -65 294 1 1 760 343 272 9 31 chr11 22994349 22994476 -98849380 + L1MA4A LINE L1 5802 5925 -378 1 760 3878 109 11 82 chr11 22994524 22995321 -98848535 - RMER17A LTR ERVK 0 751 11 1 760 483 221 134 22 chr11 22995426 22995560 -98848296 + B1_Mur1 SINE Alu 1 149 0 1 760 3667 104 44 11 chr11 22995596 22996436 -98847420 - RLTR13C1 LTR ERVK -34 999 1 1 760 378 0 0 0 chr11 22996748 22996790 -98847066 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 760 180 219 0 0 chr11 22996792 22996833 -98847023 + CT-rich Low_complexity Low_complexity 3 43 0 1 760 324 324 18 37 chr11 22996840 22996949 -98846907 - PB1 SINE Alu -20 107 1 1 760 1649 32 0 0 chr11 22997476 22997666 -98846190 + B2_Mm1a SINE B2 2 191 -2 1 760 1765 158 193 31 chr11 22997731 22998115 -98845741 - RLTR41 LTR ERV1 0 446 1 1 760 246 95 0 0 chr11 22998706 22998748 -98845108 + (T)n Simple_repeat Simple_repeat 1 42 0 1 760 2055 177 88 33 chr11 22998748 22999204 -98844652 - RMER19C LTR ERVK -38 573 9 1 760 504 262 16 0 chr11 22999215 22999337 -98844519 - B1_Mus2 SINE Alu -21 126 3 1 760 221 352 95 0 chr11 22999252 22999357 -98844499 - B4 SINE B4 -113 179 65 1 760 521 86 34 28 chr11 22999897 22999998 -98843858 + ORR1A4 LTR MaLR 1 122 -252 1 760 1142 164 64 21 chr11 23000003 23000239 -98843617 + ORR1B1 LTR MaLR 146 391 -3 1 760 1212 62 0 0 chr11 23000239 23000385 -98843471 + B1_Mus2 SINE Alu 2 147 0 2 760 378 261 164 59 chr11 23000465 23000721 -98843135 - L1ME1 LINE L1 -317 5862 5580 3 760 251 159 0 0 chr11 23000726 23000770 -98843086 + B2_Mm2 SINE B2 5 48 -147 4 760 528 279 37 61 chr11 23000854 23001018 -98842838 - RSINE1 SINE B4 0 165 6 5 760 572 270 36 50 chr11 23001186 23001408 -98842448 - ID_B1 SINE B4 0 224 6 6 760 402 252 125 9 chr11 23001556 23001668 -98842188 - PB1 SINE Alu -2 125 1 7 760 846 187 187 0 chr11 23001712 23001894 -98841962 - B3 SINE B2 0 216 1 8 760 2188 117 22 111 chr11 23001931 23002346 -98841510 - ORR1C1 LTR MaLR 0 378 1 9 760 207 108 0 0 chr11 23002665 23002686 -98841170 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 760 351 0 0 0 chr11 23002686 23002725 -98841131 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 760 207 108 0 0 chr11 23002725 23002740 -98841116 + (TA)n Simple_repeat Simple_repeat 1 15 0 1 760 423 0 0 0 chr11 23003535 23003582 -98840274 + (CCAA)n Simple_repeat Simple_repeat 4 50 0 1 760 367 181 0 57 chr11 23003754 23003842 -98840014 + ORR1A4 LTR MaLR 1 83 -246 1 760 1506 84 143 8 chr11 23003842 23004094 -98839762 - RMER16 LTR ERVK 0 533 248 1 760 318 19 0 133 chr11 23004092 23004152 -98839704 - RMER16 LTR ERVK -481 52 1 1 760 1261 140 54 17 chr11 23004177 23004417 -98839439 + ORR1A4 LTR MaLR 81 329 0 1 760 264 193 53 0 chr11 23004433 23004490 -98839366 - B1F SINE Alu -73 76 17 1 760 372 247 6 3 chr11 23004670 23004785 -98839071 - ID4_ SINE ID -31 121 6 1 760 404 200 121 32 chr11 23005232 23005356 -98838500 - ID_B1 SINE B4 0 224 90 1 760 900 215 96 54 chr11 23005440 23005720 -98838136 + B4 SINE B4 1 292 0 1 760 332 161 23 58 chr11 23005911 23005997 -98837859 - RLTR9A LTR ERVK -285 83 1 2 760 271 252 26 160 chr11 23006096 23006204 -98837652 - RMER16-int LTR ERVK -31 6511 6410 2 760 396 0 0 0 chr11 23006204 23006248 -98837608 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 2 760 1218 43 0 0 chr11 23006250 23006391 -98837465 - B1_Mus2 SINE Alu -6 141 1 2 760 271 252 26 160 chr11 23006391 23006435 -98837421 - RMER16-int LTR ERVK -133 6409 6377 2 760 14516 167 59 45 chr11 23006709 23010683 -98833173 - RMER16-int LTR ERVK -1207 6199 255 2 760 655 256 42 95 chr11 23010804 23010981 -98832875 - RLTR9A LTR ERVK -98 270 103 2 760 4612 113 37 15 chr11 23010981 23011716 -98832140 - RMER17A LTR ERVK 0 751 1 2 760 655 256 42 95 chr11 23011716 23011823 -98832033 - RLTR9A LTR ERVK -266 102 1 2 760 260 200 60 0 chr11 23012035 23012085 -98831771 + RSINE1 SINE B4 19 71 -94 2 760 1107 72 0 32 chr11 23012719 23012905 -98830951 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 760 1355 51 16 43 chr11 23012906 23013090 -98830766 - B2_Mm2 SINE B2 -14 181 3 2 760 1319 110 10 5 chr11 23013100 23013292 -98830564 - B2_Mm2 SINE B2 -1 194 2 2 760 26 30 0 0 chr11 23013304 23013337 -98830519 + AT_rich Low_complexity Low_complexity 1 33 0 2 760 321 299 183 35 chr11 23013337 23013479 -98830377 - RSINE1 SINE B4 0 165 3 3 760 619 170 63 33 chr11 23013563 23013708 -98830148 + B1_Mur1 SINE Alu 3 149 0 3 760 710 158 119 8 chr11 23013717 23013851 -98830005 + B1_Mur1 SINE Alu 1 149 0 3 760 222 172 0 0 chr11 23013851 23013899 -98829957 + A-rich Low_complexity Low_complexity 10 57 0 3 760 329 202 25 25 chr11 23013936 23014017 -98829839 - ID4_ SINE ID 0 83 3 3 760 431 208 29 10 chr11 23014067 23014169 -98829687 - ID_B1 SINE B4 0 224 121 3 760 725 103 0 0 chr11 23014357 23014464 -98829392 - B1_Mus2 SINE Alu -4 143 37 3 760 278 148 32 16 chr11 23014411 23014473 -98829383 - 4.5SRNA scRNA scRNA -8 86 24 3 760 568 217 144 19 chr11 23015153 23015313 -98828543 - B3A SINE B2 -18 180 1 3 760 281 26 26 0 chr11 23015351 23015389 -98828467 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 760 246 229 0 0 chr11 23015403 23015451 -98828405 + MLT1D LTR MaLR 449 496 -9 4 760 1425 76 5 16 chr11 23015461 23015649 -98828207 + B2_Mm1t SINE B2 3 188 -5 4 760 1283 168 9 14 chr11 23015701 23015918 -98827938 - B3 SINE B2 0 216 1 4 760 586 258 120 41 chr11 23016381 23016648 -98827208 + B4 SINE B4 5 292 0 4 760 402 69 0 0 chr11 23016673 23016731 -98827125 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 760 938 168 0 0 chr11 23016956 23017099 -98826757 - B1_Mur2 SINE Alu -6 143 1 4 760 1695 159 94 11 chr11 23017246 23017414 -98826442 + ORR1C2 LTR MaLR 6 189 -195 4 760 384 22 0 0 chr11 23017414 23017459 -98826397 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 760 1695 159 94 11 chr11 23017459 23017640 -98826216 + ORR1C2 LTR MaLR 190 383 -1 4 760 391 244 130 0 chr11 23017896 23018027 -98825829 + B1F SINE Alu 1 148 -1 4 760 254 227 13 0 chr11 23018029 23018104 -98825752 + GA-rich Low_complexity Low_complexity 3 78 0 4 760 815 116 12 81 chr11 23018323 23018483 -98825373 + B1_Mur3 SINE Alu 1 149 0 5 760 441 95 0 0 chr11 23018494 23018557 -98825299 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 760 593 301 97 40 chr11 23018641 23019011 -98824845 + L1ME4a LINE L1 5535 5925 -199 5 760 23 33 0 0 chr11 23019186 23019216 -98824640 + AT_rich Low_complexity Low_complexity 1 30 0 5 760 262 231 132 53 chr11 23019322 23019436 -98824420 - RSINE1 SINE B4 -41 124 2 5 760 414 0 0 0 chr11 23019669 23019715 -98824141 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 760 2253 172 37 7 chr11 23019997 23020406 -98823450 + MTC LTR MaLR 1 421 0 5 760 180 312 0 0 chr11 23021246 23021294 -98822562 - MIR SINE MIR -176 86 39 5 760 315 228 87 0 chr11 23021316 23021408 -98822448 + ORR1E LTR MaLR 18 117 -242 5 760 28 48 0 0 chr11 23021779 23021821 -98822035 + AT_rich Low_complexity Low_complexity 1 42 0 5 760 657 69 0 0 chr11 23022181 23022268 -98821588 + (TC)n Simple_repeat Simple_repeat 1 87 0 6 760 270 0 0 0 chr11 23022285 23022315 -98821541 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 760 361 222 115 44 chr11 23022416 23022529 -98821327 + RSINE1 SINE B4 9 129 -36 6 760 573 15 0 0 chr11 23022551 23022617 -98821239 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 760 1540 59 16 0 chr11 23022661 23022848 -98821008 + B2_Mm2 SINE B2 3 192 -3 6 760 1204 138 43 0 chr11 23023118 23023328 -98820528 - URR1B DNA MER1_type -6 219 1 6 760 21 0 0 0 chr11 23024166 23024187 -98819669 + AT_rich Low_complexity Low_complexity 1 21 0 6 760 208 214 0 79 chr11 23024530 23024606 -98819250 + (CCCCG)n Simple_repeat Simple_repeat 2 71 0 6 760 228 35 0 0 chr11 23025234 23025263 -98818593 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 760 5623 86 67 25 chr11 23025493 23025617 -98818239 - Lx LINE L1 0 6654 6535 6 760 180 0 0 0 chr11 23025617 23025637 -98818219 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 7 760 5623 86 67 25 chr11 23025637 23026358 -98817498 - Lx LINE L1 -120 6534 5774 6 760 231 299 8 114 chr11 23026647 23026779 -98817077 - MIRc SINE MIR -80 196 76 7 760 21 0 0 0 chr11 23026810 23026831 -98817025 + AT_rich Low_complexity Low_complexity 1 21 0 7 760 1327 109 10 20 chr11 23026998 23027194 -98816662 + B2_Mm2 SINE B2 2 195 0 7 760 345 47 0 0 chr11 23027194 23027237 -98816619 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 7 760 215 231 0 0 chr11 23027237 23027276 -98816580 + B1F1 SINE Alu 9 47 -102 7 760 1448 62 0 58 chr11 23027375 23027581 -98816275 - B2_Mm2 SINE B2 0 195 2 7 760 734 184 114 33 chr11 23027673 23027886 -98815970 - L1M4 LINE L1 -2464 3682 3443 7 760 520 217 163 0 chr11 23027861 23028027 -98815829 - L1MD LINE L1 -624 5618 5426 7 760 546 255 6 65 chr11 23028060 23028228 -98815628 - RSINE1 SINE B4 0 165 8 7 760 520 261 126 9 chr11 23028232 23028537 -98815319 - L1MD LINE L1 -801 5441 5094 7 760 431 276 142 0 chr11 23028702 23028829 -98815027 + RSINE1 SINE B4 2 146 -19 8 760 988 193 71 0 chr11 23029001 23029198 -98814658 + B3 SINE B2 6 216 0 8 760 565 200 18 0 chr11 23029266 23029376 -98814480 + B1_Mus1 SINE Alu 3 114 -34 8 760 2958 36 5 3 chr11 23029376 23029764 -98814092 + MTA_Mm LTR MaLR 1 389 -7 8 760 746 306 156 7 chr11 23030100 23030550 -98813306 - L1MA4A LINE L1 -428 5875 5359 8 760 260 173 86 62 chr11 23030565 23030650 -98813206 - PB1 SINE Alu -2 125 15 8 760 1139 172 10 15 chr11 23030715 23030921 -98812935 + B3 SINE B2 5 209 -7 8 760 761 185 93 22 chr11 23031030 23031212 -98812644 - B3A SINE B2 0 198 4 8 760 471 207 155 0 chr11 23031232 23031348 -98812508 - B1F SINE Alu -8 141 8 8 760 277 309 24 31 chr11 23031622 23031749 -98812107 + L2 LINE L2 2741 2866 -553 8 760 240 205 93 35 chr11 23031853 23031939 -98811917 - L1MD LINE L1 -1605 4541 4451 7 760 826 211 42 26 chr11 23031986 23032176 -98811680 + B3 SINE B2 1 193 -23 9 760 500 291 18 18 chr11 23032157 23032325 -98811531 - MLT1A0 LTR MaLR -54 311 144 9 760 324 221 12 105 chr11 23032345 23032431 -98811425 - ID4_ SINE ID -4 79 2 9 760 357 62 0 0 chr11 23032500 23032548 -98811308 + (CATA)n Simple_repeat Simple_repeat 2 49 0 9 760 437 183 182 55 chr11 23032558 23032668 -98811188 - RSINE1 SINE B4 -36 129 6 9 760 234 0 0 0 chr11 23032722 23032748 -98811108 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 760 339 227 52 10 chr11 23033260 23033356 -98810500 + PB1D10 SINE Alu 18 127 0 9 760 240 233 0 0 chr11 23033517 23033560 -98810296 + BC1_Mm scRNA scRNA 23 65 -87 9 760 378 0 0 0 chr11 23033570 23033612 -98810244 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 760 1552 74 0 0 chr11 23033656 23033872 -98809984 - MTA_Mm LTR MaLR -180 216 1 9 760 7880 67 9 70 chr11 23033872 23035038 -98808818 - MTA_Mm-int LTR MaLR 0 1098 3 9 760 1001 215 15 0 chr11 23035294 23035494 -98808362 - B3 SINE B2 -13 203 1 1 760 327 104 0 0 chr11 23035551 23035599 -98808257 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 760 234 341 31 16 chr11 23035605 23035733 -98808123 - B1F1 SINE Alu -18 131 2 1 760 266 282 51 13 chr11 23036313 23036392 -98807464 + ID4 SINE ID 2 83 0 1 760 407 294 8 25 chr11 23036441 23036563 -98807293 - B1F SINE Alu -21 128 9 1 760 743 242 0 19 chr11 23036455 23036615 -98807241 - ID_B1 SINE B4 -30 194 38 1 760 1749 163 171 17 chr11 23036823 23037185 -98806671 - MTC LTR MaLR 0 421 4 1 760 253 314 9 28 chr11 23037756 23037864 -98805992 + L2a LINE L2 3321 3426 0 1 760 1398 204 82 35 chr11 23038087 23038489 -98805367 + RMER16 LTR ERVK 113 533 0 1 760 600 229 64 19 chr11 23038586 23038742 -98805114 + RSINE1 SINE B4 3 165 0 1 760 796 142 16 16 chr11 23038752 23039005 -98804851 + (CA)n Simple_repeat Simple_repeat 1 253 0 1 760 747 121 177 0 chr11 23039327 23039451 -98804405 + B1_Mus1 SINE Alu 2 147 -1 1 760 215 314 57 0 chr11 23039462 23039532 -98804324 + ID4_ SINE ID 2 75 -8 1 760 456 270 72 14 chr11 23039807 23039946 -98803910 + ID_B1 SINE B4 6 152 -72 1 760 324 0 0 0 chr11 23040027 23040063 -98803793 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 760 393 102 0 0 chr11 23040063 23040121 -98803735 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 760 252 182 88 124 chr11 23040172 23040285 -98803571 + PB1D7 SINE Alu 12 120 0 1 760 210 224 0 0 chr11 23040291 23040340 -98803516 + CT-rich Low_complexity Low_complexity 3 51 0 1 760 330 192 51 0 chr11 23040340 23040418 -98803438 - PB1D9 SINE Alu 0 120 39 1 760 311 175 0 31 chr11 23040361 23040426 -98803430 - MT2B LTR ERVL -351 250 188 1 760 384 288 9 18 chr11 23042374 23042487 -98801369 - PB1D10 SINE Alu -1 116 5 1 760 459 161 97 0 chr11 23042572 23042665 -98801191 + B1_Mur4 SINE Alu 5 106 -44 1 760 210 71 0 0 chr11 23043015 23043043 -98800813 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 760 31 0 0 0 chr11 23043057 23043088 -98800768 + AT_rich Low_complexity Low_complexity 1 31 0 1 760 326 283 98 29 chr11 23043106 23043208 -98800648 + PB1D10 SINE Alu 2 110 -7 1 760 549 227 0 0 chr11 23043406 23043732 -98800124 + (TG)n Simple_repeat Simple_repeat 1 326 0 1 760 1301 78 5 0 chr11 23044736 23044955 -98798901 + (TTC)n Simple_repeat Simple_repeat 1 219 0 1 760 396 0 0 0 chr11 23044956 23045000 -98798856 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 760 298 310 124 0 chr11 23045003 23045116 -98798740 - B1F SINE Alu -21 128 2 1 760 21 0 0 0 chr11 23045118 23045139 -98798717 + AT_rich Low_complexity Low_complexity 1 21 0 1 760 22 35 0 0 chr11 23045181 23045210 -98798646 + AT_rich Low_complexity Low_complexity 1 29 0 1 760 1250 48 0 0 chr11 23045274 23045421 -98798435 + B1_Mus2 SINE Alu 1 147 0 1 760 217 250 0 0 chr11 23045660 23045704 -98798152 + PB1D7 SINE Alu 56 99 -21 1 760 227 286 0 0 chr11 23045705 23045761 -98798095 + ORR1D1 LTR MaLR 1 56 -318 1 760 468 269 0 25 chr11 23045764 23045886 -98797970 + PB1D7 SINE Alu 1 119 -1 1 760 502 259 126 0 chr11 23045932 23045956 -98797900 + B3A SINE B2 20 43 -155 1 760 2724 62 0 0 chr11 23045956 23046296 -98797560 - L1Md_A LINE L1 -1 6581 6242 1 760 502 262 126 2 chr11 23046296 23046448 -98797408 + B3A SINE B2 44 215 -1 1 760 645 171 64 4 chr11 23046477 23046657 -98797199 + B3 SINE B2 6 198 0 1 760 224 30 0 29 chr11 23046697 23046731 -98797125 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 760 601 200 50 0 chr11 23046755 23046875 -98796981 + B1_Mur1 SINE Alu 19 144 -5 1 760 240 273 25 25 chr11 23047725 23047804 -98796052 - L1MC5 LINE L1 -180 7781 7703 1 760 604 179 94 0 chr11 23047810 23047927 -98795929 + B1_Mur2 SINE Alu 6 133 -16 1 760 188 267 98 49 chr11 23048348 23048470 -98795386 - L2c LINE L2 -6 3381 3254 1 760 431 181 103 19 chr11 23048491 23048598 -98795258 - B1_Mur1 SINE Alu 0 149 34 1 760 263 257 13 13 chr11 23048955 23049030 -98794826 + Tigger15a DNA TcMar 208 282 -433 1 760 21 0 0 0 chr11 23049337 23049358 -98794498 + AT_rich Low_complexity Low_complexity 1 21 0 1 760 711 96 261 0 chr11 23049517 23049632 -98794224 + B1_Mus1 SINE Alu 2 146 -2 1 760 297 0 0 0 chr11 23049632 23049665 -98794191 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 760 1111 104 90 23 chr11 23049670 23049847 -98794009 + B2_Mm2 SINE B2 2 190 -5 1 760 590 208 64 0 chr11 23050174 23050299 -98793557 - B1_Mus2 SINE Alu -5 142 10 1 760 507 270 20 20 chr11 23050593 23050744 -98793112 - RSINE1 SINE B4 -2 163 13 1 760 384 122 435 39 chr11 23050761 23050915 -98792941 - B3 SINE B2 0 216 2 1 760 364 217 27 54 chr11 23051096 23051208 -98792648 + PB1D9 SINE Alu 11 119 -1 1 760 339 25 0 0 chr11 23051209 23051249 -98792607 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 760 224 246 0 50 chr11 23051323 23051383 -98792473 + RSINE1 SINE B4 87 143 -22 1 760 282 29 0 0 chr11 23051388 23051423 -98792433 + (TAG)n Simple_repeat Simple_repeat 1 35 0 1 760 310 298 35 0 chr11 23051451 23051565 -98792291 + MER34 LTR ERV1 93 210 -332 1 760 522 258 74 94 chr11 23051606 23051850 -98792006 + MER34 LTR ERV1 292 530 -12 1 760 239 308 37 18 chr11 23051914 23052023 -98791833 - RMER15 LTR ERVL -13 562 452 1 760 436 246 80 22 chr11 23052426 23052563 -98791293 + B1F SINE Alu 5 149 0 1 760 1106 223 118 19 chr11 23052679 23052994 -98790862 + MTD LTR MaLR 46 391 -28 1 760 1009 116 7 7 chr11 23053191 23053338 -98790518 - B1_Mus1 SINE Alu 0 148 2 1 760 865 63 79 0 chr11 23053722 23053848 -98790008 + B1_Mus1 SINE Alu 13 148 0 1 760 1297 189 32 184 chr11 23053894 23054049 -98789807 + ORR1D1 LTR MaLR 1 134 -240 1 760 1245 48 0 0 chr11 23054049 23054196 -98789660 - B1_Mus2 SINE Alu 0 147 1 1 760 1297 189 32 184 chr11 23054196 23054429 -98789427 + ORR1D1 LTR MaLR 135 323 -51 1 760 234 0 0 0 chr11 23054429 23054455 -98789401 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 760 1297 189 32 184 chr11 23054455 23054505 -98789351 + ORR1D1 LTR MaLR 324 373 -1 1 760 951 253 38 13 chr11 23054795 23055031 -98788825 + MTE2b LTR MaLR 1 242 -137 1 760 618 209 43 25 chr11 23055150 23055312 -98788544 + MTE2b LTR MaLR 215 379 0 1 760 426 238 19 81 chr11 23055560 23055720 -98788136 + MER31-int LTR ERV1 2210 2359 -2997 1 760 26 50 0 0 chr11 23055795 23055835 -98788021 + AT_rich Low_complexity Low_complexity 1 40 0 1 760 279 54 0 0 chr11 23055852 23055889 -98787967 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 760 378 314 8 8 chr11 23055890 23056009 -98787847 - B4A SINE B4 -173 119 1 1 760 592 289 50 50 chr11 23056032 23056411 -98787445 + MER31-int LTR ERV1 2799 3177 -1759 1 760 1028 227 134 50 chr11 23056425 23056745 -98787111 - MTD LTR MaLR -34 385 39 1 760 7803 105 26 34 chr11 23056767 23057075 -98786781 + RMER16-int LTR ERVK 308 612 -4794 1 760 1596 32 0 16 chr11 23057075 23057264 -98786592 - B2_Mm1t SINE B2 -6 187 2 1 760 7803 105 26 34 chr11 23057264 23058125 -98785731 + RMER16-int LTR ERVK 613 1468 -3938 1 760 8291 136 48 50 chr11 23058240 23060102 -98783754 + RMER16-int LTR ERVK 1566 3836 -3570 1 760 9203 88 51 26 chr11 23060092 23061070 -98782786 + RMER16-int LTR ERVK 4007 5043 -363 1 760 1093 83 7 0 chr11 23061070 23061215 -98782641 + B1_Mus1 SINE Alu 1 146 -2 1 760 9203 88 51 26 chr11 23061215 23061599 -98782257 + RMER16-int LTR ERVK 5044 5404 -2 1 760 1502 152 114 60 chr11 23061628 23061979 -98781877 + RMER16 LTR ERVK 70 439 -94 1 760 369 0 0 0 chr11 23061980 23062021 -98781835 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 760 1686 127 130 0 chr11 23062024 23062332 -98781524 + ORR1C1 LTR MaLR 25 372 -6 1 760 6599 155 137 35 chr11 23062338 23063706 -98780150 + ORR1C1-int LTR MaLR 3 1509 0 1 760 1317 209 73 68 chr11 23063706 23064076 -98779780 + ORR1C1 LTR MaLR 1 372 -6 1 760 294 228 185 0 chr11 23064278 23064370 -98779486 + PB1D10 SINE Alu 9 117 0 1 760 198 0 0 0 chr11 23064372 23064394 -98779462 + (A)n Simple_repeat Simple_repeat 1 22 0 1 760 1148 207 14 5 chr11 23064535 23064749 -98779107 - B3 SINE B2 0 216 1 1 760 369 93 0 0 chr11 23064760 23064814 -98779042 + (ATG)n Simple_repeat Simple_repeat 1 54 0 1 760 214 267 9 47 chr11 23064825 23064931 -98778925 + BC1_Mm scRNA scRNA 16 117 -35 1 760 710 104 9 0 chr11 23064971 23065077 -98778779 + B2_Mm2 SINE B2 2 108 -87 1 760 317 298 10 0 chr11 23065190 23065294 -98778562 - PB1D7 SINE Alu -15 105 1 1 760 1055 50 42 28 chr11 23065466 23065610 -98778246 + B1_Mm SINE Alu 2 147 0 1 760 960 95 0 0 chr11 23065624 23065761 -98778095 + (GAAA)n Simple_repeat Simple_repeat 2 138 0 1 760 671 228 0 0 chr11 23065852 23065979 -98777877 - B1F1 SINE Alu -21 128 2 1 760 366 306 36 0 chr11 23066478 23066589 -98777267 - ID_B1 SINE B4 -26 198 84 1 760 276 260 39 0 chr11 23066711 23066788 -98777068 - ID4 SINE ID -2 81 2 1 760 267 221 0 8 chr11 23066791 23066869 -98776987 - PB1 SINE Alu 0 127 44 1 760 2521 123 84 43 chr11 23067483 23067923 -98775933 - RMER6B LTR ERVK 0 461 4 1 760 484 226 9 0 chr11 23068393 23068499 -98775357 - B1F1 SINE Alu -5 144 38 1 11 946 200 172 109 chr11 23068560 23068908 -98774948 - ORR1D2 LTR MaLR 0 370 1 1 761 311 228 24 48 chr11 23068908 23068983 -98774873 + ID SINE ID 9 81 -143 1 761 277 198 19 133 chr11 23068983 23069005 -98774851 + BC1_Mm scRNA scRNA 9 93 -59 1 761 270 0 0 0 chr11 23069325 23069355 -98774501 + (T)n Simple_repeat Simple_repeat 1 30 0 1 761 511 254 74 7 chr11 23069523 23069658 -98774198 + B1F1 SINE Alu 4 147 -2 1 761 301 242 30 0 chr11 23069812 23069878 -98773978 - ID2 SINE ID 0 83 16 1 761 731 211 141 0 chr11 23069861 23070046 -98773810 - B4A SINE B4 -80 212 2 1 761 703 263 25 69 chr11 23070072 23070276 -98773580 - B3A SINE B2 0 198 4 1 761 597 28 0 0 chr11 23070342 23070413 -98773443 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 1 761 327 194 0 0 chr11 23070432 23070502 -98773354 + PB1D7 SINE Alu 1 70 -47 2 761 207 100 0 0 chr11 23070506 23070536 -98773320 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 761 601 288 31 0 chr11 23070548 23070708 -98773148 + B3 SINE B2 1 165 -51 2 761 727 244 122 0 chr11 23070740 23070920 -98772936 + B3 SINE B2 1 202 -14 2 761 301 211 40 0 chr11 23071047 23071123 -98772733 - PB1D9 SINE Alu 0 120 42 2 761 2123 198 144 37 chr11 23071220 23071812 -98772044 - RMER1B Other Other 0 1066 412 2 761 1937 193 50 97 chr11 23071853 23072613 -98771243 - RMER1A Other Other -546 520 1 2 761 235 246 75 30 chr11 23073291 23073358 -98770498 + tRNA-Ala-GCY_ tRNA tRNA 1 70 -5 2 761 216 0 0 0 chr11 23073555 23073579 -98770277 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 761 292 265 58 48 chr11 23073620 23073723 -98770133 - PB1D7 SINE Alu -1 119 16 2 761 448 127 59 24 chr11 23073723 23073892 -98769964 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 761 446 295 54 20 chr11 23073958 23074162 -98769694 + ID_B1 SINE B4 4 214 -10 2 761 375 259 83 15 chr11 23074425 23074558 -98769298 - B1F SINE Alu -7 142 1 2 761 420 264 35 61 chr11 23074884 23075066 -98768790 + LTR16A LTR ERVL 45 214 -242 2 761 574 252 86 38 chr11 23075262 23075472 -98768384 + ID_B1 SINE B4 2 221 -3 2 761 1054 170 77 14 chr11 23075959 23076168 -98767688 - Lx4A LINE L1 -23 7035 6814 2 761 351 320 26 7 chr11 23076170 23076321 -98767535 - B4 SINE B4 -63 229 76 2 761 353 307 30 0 chr11 23076321 23076422 -98767434 + MTE2b LTR MaLR 1 104 -275 2 761 1187 68 0 0 chr11 23076425 23076572 -98767284 + B1_Mus2 SINE Alu 1 147 0 2 761 426 108 0 0 chr11 23076572 23076637 -98767219 + (GAAA)n Simple_repeat Simple_repeat 1 65 0 2 761 338 277 32 89 chr11 23076647 23076770 -98767086 + MTE2b LTR MaLR 108 223 -156 2 761 468 309 19 13 chr11 23076766 23076920 -98766936 - RSINE1 SINE B4 0 165 11 2 761 341 245 84 11 chr11 23076932 23077027 -98766829 + MTE2b LTR MaLR 206 307 -72 2 761 229 262 0 116 chr11 23077049 23077118 -98766738 - B4A SINE B4 -213 79 19 2 761 336 291 0 0 chr11 23077118 23077197 -98766659 - ID_B1 SINE B4 -7 217 139 2 761 1140 111 0 0 chr11 23077268 23077439 -98766417 + (GAAAA)n Simple_repeat Simple_repeat 5 175 0 2 761 219 235 20 0 chr11 23077505 23077556 -98766300 + B4A SINE B4 27 78 -214 2 761 1736 137 65 1 chr11 23077735 23078055 -98765801 - Lx LINE L1 -846 5808 5487 2 761 434 132 66 0 chr11 23078124 23078200 -98765656 + RMER19B LTR ERVK 1 81 -821 2 761 3015 158 102 43 chr11 23078356 23078539 -98765317 + RMER19B LTR ERVK 56 238 -664 2 761 237 33 0 0 chr11 23078539 23078569 -98765287 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 761 3015 153 104 46 chr11 23078569 23079075 -98764781 + RMER19B LTR ERVK 239 766 -136 2 761 1222 34 7 0 chr11 23079075 23079221 -98764635 + B1_Mus2 SINE Alu 1 147 0 2 761 228 289 179 19 chr11 23079221 23079240 -98764616 + RMER19B LTR ERVK 484 502 -109 2 761 1022 95 209 0 chr11 23079263 23079421 -98764435 + B2_Mm2 SINE B2 5 195 0 2 761 796 197 0 13 chr11 23079444 23079593 -98764263 + B1_Mur3 SINE Alu 2 148 -1 2 761 297 234 9 146 chr11 23079680 23079790 -98764066 + MT2B LTR ERVL 170 264 -337 2 761 640 182 8 32 chr11 23079693 23079818 -98764038 + B1_Mus1 SINE Alu 20 141 -7 2 761 339 65 0 0 chr11 23079819 23079865 -98763991 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 2 761 487 280 104 7 chr11 23080018 23080162 -98763694 + B3 SINE B2 5 162 -54 2 761 784 29 19 0 chr11 23080165 23080268 -98763588 + (CATA)n Simple_repeat Simple_repeat 2 106 0 2 761 342 253 117 6 chr11 23080280 23080443 -98763413 + L1M2 LINE L1 5120 5300 -843 2 761 1157 172 58 10 chr11 23080480 23080685 -98763171 + B3 SINE B2 2 216 0 2 761 752 279 74 27 chr11 23080688 23080960 -98762896 + Lx8 LINE L1 5526 5815 -32 2 761 862 276 139 42 chr11 23080960 23081297 -98762559 + ORR1D2 LTR MaLR 1 370 0 2 761 752 316 77 35 chr11 23081297 23081425 -98762431 + Lx8 LINE L1 5816 5972 -1672 2 761 655 157 0 25 chr11 23081658 23081776 -98762080 + B1_Mur3 SINE Alu 15 129 -20 2 761 186 118 0 0 chr11 23082218 23082252 -98761604 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 761 455 330 0 0 chr11 23082252 23082361 -98761495 - RSINE1 SINE B4 0 165 57 2 761 245 191 0 0 chr11 23082381 23082428 -98761428 + ID_B1 SINE B4 178 224 0 2 761 594 257 163 5 chr11 23082431 23082615 -98761241 + B3 SINE B2 1 213 -3 2 761 806 178 0 14 chr11 23082709 23082857 -98760999 + B1_Mur4 SINE Alu 5 150 0 2 761 405 285 70 108 chr11 23082714 23082899 -98760957 + B4 SINE B4 94 271 -21 2 761 360 267 48 14 chr11 23083144 23083272 -98760584 + PB1D7 SINE Alu 1 126 -23 2 761 735 186 7 35 chr11 23083394 23083539 -98760317 - B1_Mur1 SINE Alu 0 149 9 2 761 661 45 0 0 chr11 23083642 23083730 -98760126 + B1_Mus1 SINE Alu 37 124 -24 2 761 608 120 10 0 chr11 23083943 23084043 -98759813 + (TTCTC)n Simple_repeat Simple_repeat 5 105 0 2 761 1544 58 0 10 chr11 23084055 23084247 -98759609 + B2_Mm1a SINE B2 2 191 -2 2 761 876 207 93 0 chr11 23084255 23084448 -98759408 - ID_B1 SINE B4 -13 211 1 2 761 23 0 0 0 chr11 23084550 23084573 -98759283 + AT_rich Low_complexity Low_complexity 1 23 0 2 761 229 258 160 70 chr11 23084585 23084685 -98759171 + PB1D10 SINE Alu 1 109 -8 2 761 536 215 28 0 chr11 23084698 23084805 -98759051 + B3A SINE B2 3 112 -86 2 761 441 0 0 0 chr11 23084827 23084876 -98758980 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 761 645 259 17 14 chr11 23085345 23085505 -98758351 - B3 SINE B2 -1 194 44 2 761 186 43 0 0 chr11 23085521 23085544 -98758312 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2 761 523 294 6 36 chr11 23085572 23085699 -98758157 - RSINE1 SINE B4 -4 161 39 2 761 2671 75 142 146 chr11 23085699 23086213 -98757643 - RLTR1B LTR ERV1 0 512 1 2 761 523 294 6 36 chr11 23086213 23086251 -98757605 - RSINE1 SINE B4 -127 38 1 2 761 260 216 0 19 chr11 23086301 23086353 -98757503 + ID4_ SINE ID 24 74 -9 2 761 26 50 0 0 chr11 23087003 23087043 -98756813 + AT_rich Low_complexity Low_complexity 1 40 0 2 761 296 266 25 0 chr11 23087117 23087196 -98756660 - ID2 SINE ID 0 83 3 2 761 213 121 0 0 chr11 23087204 23087237 -98756619 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 2 761 515 128 0 9 chr11 23087347 23087457 -98756399 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 761 521 273 16 8 chr11 23087484 23087606 -98756250 + ID_B1 SINE B4 87 209 -15 2 761 677 269 16 36 chr11 23087644 23087837 -98756019 + B3A SINE B2 3 191 -7 2 761 620 168 29 58 chr11 23087986 23088125 -98755731 - B1_Mur2 SINE Alu 0 149 15 2 761 518 190 6 104 chr11 23088125 23088150 -98755706 - ID_B1 SINE B4 0 224 77 2 761 479 212 0 5 chr11 23088623 23088851 -98755005 + (CA)n Simple_repeat Simple_repeat 1 226 0 2 761 400 287 158 11 chr11 23088856 23089046 -98754810 + ID_B1 SINE B4 3 220 -4 2 761 362 200 230 0 chr11 23089255 23089355 -98754501 + B3A SINE B2 4 126 -72 2 761 333 0 0 0 chr11 23089377 23089414 -98754442 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 761 1831 164 16 3 chr11 23089758 23090063 -98753793 - RLTR27 LTR ERVK 0 309 1 2 761 492 169 0 0 chr11 23090063 23090152 -98753704 - MMERVK10C-int LTR ERVK 0 7581 7493 2 761 2286 61 0 3 chr11 23090153 23090467 -98753389 - RLTR10A LTR ERVK -98 313 1 2 761 441 289 140 29 chr11 23090511 23090682 -98753174 - ID_B1 SINE B4 -32 192 3 2 761 416 308 120 52 chr11 23090722 23090955 -98752901 - B4A SINE B4 -42 250 2 2 761 684 214 14 7 chr11 23091137 23091278 -98752578 - B1_Mur2 SINE Alu -7 142 1 2 761 587 96 91 55 chr11 23091333 23091443 -98752413 - RLTR19B LTR ERVK 0 715 602 2 761 353 256 0 113 chr11 23091569 23091710 -98752146 + B1F1 SINE Alu 24 148 -1 2 761 578 128 126 18 chr11 23091831 23091942 -98751914 + B1_Mus2 SINE Alu 25 147 0 2 761 234 0 0 0 chr11 23091943 23091969 -98751887 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 761 325 297 30 0 chr11 23092304 23092405 -98751451 + PB1D10 SINE Alu 14 117 0 2 761 1860 162 97 0 chr11 23092664 23093016 -98750840 - ORR1B1 LTR MaLR -8 386 1 2 761 360 242 168 0 chr11 23093016 23093109 -98750747 + ID_B1 SINE B4 103 211 -13 2 761 24 0 0 29 chr11 23093109 23093126 -98750730 + AT_rich Low_complexity Low_complexity 1 17 0 2 761 860 240 19 38 chr11 23093126 23093338 -98750518 - B3 SINE B2 -8 208 1 2 761 24 0 0 29 chr11 23093338 23093355 -98750501 + AT_rich Low_complexity Low_complexity 1 17 0 2 761 4220 154 59 27 chr11 23093516 23094039 -98749817 + L1Md_F LINE L1 187 937 -5679 2 761 1488 34 50 0 chr11 23094039 23094218 -98749638 + B2_Mm1a SINE B2 1 188 -5 2 761 29646 101 9 3 chr11 23094218 23098581 -98745275 + L1Md_F LINE L1 938 5322 -561 2 761 1266 41 0 0 chr11 23098581 23098728 -98745128 + B1_Mm SINE Alu 1 147 0 2 761 29646 98 6 1 chr11 23098728 23098840 -98745016 + L1Md_F LINE L1 5323 5432 -451 2 761 409 132 145 0 chr11 23098840 23098916 -98744940 - B1F2 SINE Alu -54 95 9 2 761 293 205 32 74 chr11 23098850 23098945 -98744911 - MT2B2 LTR ERVL -344 240 150 2 761 1526 180 94 20 chr11 23098964 23099316 -98744540 + MTC LTR MaLR 44 421 0 2 761 225 313 74 57 chr11 23099423 23099545 -98744311 + ID_B1 SINE B4 99 222 -2 2 761 1119 63 35 0 chr11 23099548 23099690 -98744166 + B1_Mus2 SINE Alu 1 147 0 2 761 258 274 11 77 chr11 23099706 23099797 -98744059 + PB1D10 SINE Alu 6 90 -27 2 761 531 0 0 0 chr11 23099821 23099880 -98743976 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2 761 8270 64 18 0 chr11 23099934 23101018 -98742838 - L1_Mus3 LINE L1 -4 6634 5531 2 761 441 0 0 0 chr11 23101180 23101229 -98742627 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 761 337 23 0 0 chr11 23101231 23101274 -98742582 - B1_Mm SINE Alu -12 135 93 3 761 648 77 0 0 chr11 23101271 23101362 -98742494 - B1_Mus2 SINE Alu -23 124 34 3 761 362 121 0 17 chr11 23101550 23101609 -98742247 + B3 SINE B2 3 60 -156 3 761 533 193 92 8 chr11 23101595 23101715 -98742141 - B3 SINE B2 -85 131 2 3 761 507 254 23 0 chr11 23101726 23101856 -98742000 - B1F2 SINE Alu -10 139 7 3 761 215 214 0 0 chr11 23102593 23102635 -98741221 + CT-rich Low_complexity Low_complexity 3 44 0 3 761 356 264 22 0 chr11 23103002 23103093 -98740763 + ID_B1 SINE B4 81 173 -51 3 761 445 299 29 14 chr11 23103262 23103401 -98740455 + B3A SINE B2 4 144 -54 3 761 225 274 0 0 chr11 23103391 23103442 -98740414 - RLTR17 LTR ERVK -267 425 375 3 761 2484 156 36 34 chr11 23103437 23103908 -98739948 + RLTR17 LTR ERVK 221 692 0 3 761 260 239 0 69 chr11 23104294 23104366 -98739490 + ID4_ SINE ID 1 67 -16 3 761 480 240 0 19 chr11 23104541 23104647 -98739209 - ID_B1 SINE B4 -10 214 111 3 761 616 243 14 0 chr11 23104699 23104843 -98739013 - B1F SINE Alu 0 149 4 3 761 258 287 117 0 chr11 23104992 23105086 -98738770 - PB1D10 SINE Alu 0 117 13 3 761 34 0 0 0 chr11 23105103 23105137 -98738719 + AT_rich Low_complexity Low_complexity 1 34 0 3 761 1206 49 0 0 chr11 23105142 23105285 -98738571 - B1_Mus1 SINE Alu -5 143 1 3 761 567 284 33 15 chr11 23105292 23105501 -98738355 - B3A SINE B2 -1 215 8 3 761 279 195 75 0 chr11 23105592 23105672 -98738184 + B4 SINE B4 2 88 -204 3 761 271 295 0 0 chr11 23105686 23105764 -98738092 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 761 312 200 0 0 chr11 23105793 23105883 -98737973 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 761 514 292 61 87 chr11 23105883 23106160 -98737696 + B4A SINE B4 6 275 -17 3 761 894 224 34 0 chr11 23106223 23106428 -98737428 + B3 SINE B2 5 216 0 3 761 1169 62 7 0 chr11 23106494 23106640 -98737216 + B1_Mus2 SINE Alu 1 147 0 3 761 339 294 73 7 chr11 23106686 23106823 -98737033 - B1F1 SINE Alu -3 146 1 3 761 873 130 19 58 chr11 23106847 23107002 -98736854 + B1_Mur4 SINE Alu 2 150 0 3 761 188 0 0 69 chr11 23107002 23107031 -98736825 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 3 761 308 222 67 0 chr11 23107197 23107287 -98736569 - B1_Mur2 SINE Alu -1 148 53 3 761 653 193 86 17 chr11 23107287 23107461 -98736395 - RMER15 LTR ERVL 0 575 390 3 761 343 132 14 14 chr11 23107461 23107530 -98736326 + GA-rich Low_complexity Low_complexity 3 71 0 3 761 1006 128 12 0 chr11 23107542 23107714 -98736142 + (GAA)n Simple_repeat Simple_repeat 3 176 0 3 761 3168 46 8 20 chr11 23107719 23108120 -98735736 + MTA_Mm LTR MaLR 1 396 0 3 761 505 187 16 8 chr11 23108124 23108248 -98735608 + GA-rich Low_complexity Low_complexity 1 125 0 3 761 439 242 160 62 chr11 23108253 23108447 -98735409 + B3 SINE B2 4 216 0 3 761 1655 218 93 81 chr11 23108724 23109328 -98734528 - RMER19C LTR ERVK 0 611 1 3 761 243 0 0 0 chr11 23109332 23109359 -98734497 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 761 1029 45 76 0 chr11 23109362 23109494 -98734362 - B1_Mus1 SINE Alu -5 143 2 3 761 474 301 52 42 chr11 23109554 23109633 -98734223 - B4A SINE B4 -1 291 216 3 761 803 275 24 10 chr11 23109633 23109842 -98734014 - B3 SINE B2 -4 212 1 3 761 474 301 52 42 chr11 23109842 23110050 -98733806 - B4A SINE B4 -77 215 1 3 761 242 291 0 0 chr11 23110176 23110231 -98733625 + (TATG)n Simple_repeat Simple_repeat 4 58 0 3 761 230 244 0 0 chr11 23110252 23110297 -98733559 - B3A SINE B2 -107 91 47 3 761 656 214 8 22 chr11 23110293 23110427 -98733429 - B1_Mur1 SINE Alu -9 140 9 3 761 230 0 0 32 chr11 23110465 23110496 -98733360 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 761 504 182 27 18 chr11 23111018 23111130 -98732726 + PB1D7 SINE Alu 6 118 -2 3 761 270 148 0 0 chr11 23111615 23111669 -98732187 + (TTTTC)n Simple_repeat Simple_repeat 1 54 0 3 761 339 289 73 15 chr11 23111669 23111806 -98732050 - B1F1 SINE Alu 0 149 5 3 761 1635 42 0 0 chr11 23111839 23112031 -98731825 - B2_Mm1a SINE B2 0 193 2 3 761 1481 63 11 0 chr11 23112033 23112222 -98731634 - B2_Mm1t SINE B2 -1 192 2 3 761 1332 83 15 45 chr11 23112308 23112509 -98731347 + B2_Mm2 SINE B2 1 195 0 3 761 267 221 22 44 chr11 23112516 23112606 -98731250 + PB1D9 SINE Alu 17 107 -13 3 761 292 247 52 52 chr11 23112604 23112681 -98731175 - ID_B1 SINE B4 -37 187 111 3 761 247 267 244 0 chr11 23112728 23112818 -98731038 + B1F1 SINE Alu 30 141 -8 3 761 455 233 198 48 chr11 23112837 23113089 -98730767 + B4A SINE B4 2 291 -1 3 761 585 212 134 6 chr11 23113815 23113972 -98729884 + B3A SINE B2 4 180 -18 3 761 588 175 133 0 chr11 23114230 23114350 -98729506 - B1_Mur1 SINE Alu -13 136 1 3 761 768 224 0 13 chr11 23114669 23114818 -98729038 + B1_Mus2 SINE Alu 1 147 0 3 761 463 206 271 8 chr11 23114835 23114992 -98728864 - MTD LTR MaLR -14 405 199 3 761 363 111 194 0 chr11 23115000 23115072 -98728784 + MT2B2 LTR ERVL 1 86 -515 3 761 1251 72 39 0 chr11 23115073 23115253 -98728603 - B2_Mm2 SINE B2 -7 188 2 3 761 3200 103 54 0 chr11 23115253 23115736 -98728120 + MT2B2 LTR ERVL 74 582 -2 3 761 576 277 0 12 chr11 23115741 23115909 -98727947 - MTD LTR MaLR -253 166 1 3 761 27 29 0 0 chr11 23115913 23115947 -98727909 + AT_rich Low_complexity Low_complexity 1 34 0 3 761 199 197 13 13 chr11 23115980 23116048 -98727808 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 761 3136 58 8 8 chr11 23116048 23116444 -98727412 + MTA_Mm LTR MaLR 1 396 0 3 761 199 197 13 13 chr11 23116444 23116452 -98727404 + (TA)n Simple_repeat Simple_repeat 2 9 0 3 761 248 302 20 50 chr11 23116734 23116767 -98727089 + B4A SINE B4 55 84 -208 3 761 743 174 14 14 chr11 23116767 23116913 -98726943 + B1_Mus2 SINE Alu 1 146 -1 3 761 606 266 14 7 chr11 23117085 23117229 -98726627 + ID_B1 SINE B4 80 224 0 3 761 297 183 0 48 chr11 23117290 23117353 -98726503 + B1_Mur4 SINE Alu 57 116 -34 3 761 228 67 0 0 chr11 23117446 23117476 -98726380 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 761 846 67 0 8 chr11 23118031 23118152 -98725704 + B1_Mus2 SINE Alu 26 145 -2 3 761 257 234 108 15 chr11 23118174 23118239 -98725617 + PB1D10 SINE Alu 14 84 -33 3 761 286 296 66 28 chr11 23118318 23118499 -98725357 + Lx8 LINE L1 7001 7188 -285 3 761 2899 24 0 43 chr11 23118582 23118934 -98724922 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 761 57621 16 14 1 chr11 23118934 23125322 -98718534 - IAPEz-int LTR ERVK 0 6481 8 3 761 2899 24 0 43 chr11 23125322 23125674 -98718182 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 761 207 150 0 91 chr11 23125735 23125779 -98718077 + polypurine Low_complexity Low_complexity 1 40 0 3 761 217 297 0 0 chr11 23125873 23125937 -98717919 + B1F1 SINE Alu 6 69 -80 3 761 315 172 17 0 chr11 23125961 23126019 -98717837 + B3A SINE B2 1 59 -139 3 761 212 146 49 0 chr11 23126019 23126060 -98717796 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 3 761 277 122 20 0 chr11 23126139 23126188 -98717668 + PB1D9 SINE Alu 6 55 -65 3 761 1251 106 26 5 chr11 23126252 23126441 -98717415 + B2_Mm2 SINE B2 2 194 -1 3 761 304 344 33 0 chr11 23126590 23126680 -98717176 - PB1D7 SINE Alu -8 112 20 3 761 1125 51 0 0 chr11 23126729 23126866 -98716990 + B1_Mus1 SINE Alu 1 137 -11 3 761 231 61 0 0 chr11 23126866 23126899 -98716957 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 761 189 107 0 0 chr11 23127077 23127105 -98716751 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 3 761 589 162 120 0 chr11 23127234 23127351 -98716505 + B1_Mus2 SINE Alu 10 140 -7 3 761 237 358 65 14 chr11 23127240 23127379 -98716477 + B4A SINE B4 106 251 -41 3 761 270 269 15 0 chr11 23127499 23127566 -98716290 + ID2 SINE ID 2 69 -14 3 761 185 316 18 0 chr11 23127810 23127867 -98715989 - L2b LINE L2 -304 3071 3014 3 761 282 211 0 0 chr11 23128042 23128094 -98715762 - ID SINE ID -169 55 4 3 761 633 132 8 16 chr11 23128114 23128237 -98715619 + T-rich Low_complexity Low_complexity 3 124 0 3 761 203 299 230 27 chr11 23128269 23128417 -98715439 + MIR SINE MIR 13 190 -72 3 761 321 250 21 74 chr11 23128511 23128606 -98715250 + B4A SINE B4 2 91 -201 3 761 740 203 22 0 chr11 23128607 23128745 -98715111 + B1_Mur1 SINE Alu 2 142 -7 3 761 297 300 22 0 chr11 23128920 23129010 -98714846 + ID_B1 SINE B4 130 221 -3 3 761 286 305 12 0 chr11 23129009 23129091 -98714765 + PB1D7 SINE Alu 1 83 -37 3 761 428 289 46 36 chr11 23129108 23129187 -98714669 + ID_B1 SINE B4 17 212 -12 3 761 658 174 9 0 chr11 23129187 23129302 -98714554 + B1_Mur2 SINE Alu 22 137 -12 3 761 289 0 49 0 chr11 23129302 23129343 -98714513 + (TAA)n Simple_repeat Simple_repeat 2 44 0 3 761 1114 312 64 6 chr11 23129349 23129460 -98714396 + L1MC LINE L1 5311 5431 -2451 3 761 1485 64 16 0 chr11 23129460 23129648 -98714208 - B2_Mm2 SINE B2 -4 191 1 3 761 1114 312 64 6 chr11 23129648 23130020 -98713836 + L1MC LINE L1 5432 5821 -2061 3 761 1330 75 21 5 chr11 23130101 23130260 -98713596 + B2_Mm1a SINE B2 1 160 -33 3 761 369 62 0 0 chr11 23130260 23130308 -98713548 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 761 1330 75 21 5 chr11 23130308 23130335 -98713521 + B2_Mm1a SINE B2 161 189 -4 3 761 284 279 63 0 chr11 23130504 23130583 -98713273 + RSINE1 SINE B4 12 95 -70 3 761 380 306 12 109 chr11 23130714 23130879 -98712977 + B1F1 SINE Alu 1 149 0 3 761 215 79 0 26 chr11 23131121 23131160 -98712696 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 761 749 151 0 16 chr11 23131169 23131290 -98712566 - B1_Mur1 SINE Alu -7 142 24 4 761 231 314 65 19 chr11 23131313 23131420 -98712436 - B1F SINE Alu 0 149 38 4 761 820 101 11 53 chr11 23131647 23131835 -98712021 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 761 922 251 15 0 chr11 23131862 23132061 -98711795 - B3 SINE B2 -13 203 2 4 761 1422 84 5 10 chr11 23132165 23132358 -98711498 + B2_Mm1a SINE B2 1 192 -1 4 761 393 175 0 0 chr11 23132630 23132693 -98711163 + RSINE1 SINE B4 65 127 -38 4 761 288 0 0 0 chr11 23132735 23132767 -98711089 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 761 238 258 61 0 chr11 23132831 23132897 -98710959 - L1M2 LINE L1 -516 5781 5712 4 761 224 329 0 37 chr11 23132897 23132979 -98710877 - ID_B1 SINE B4 -64 160 82 4 761 1077 38 53 0 chr11 23133063 23133194 -98710662 + B1_Mus1 SINE Alu 3 140 -8 4 761 222 62 0 0 chr11 23133194 23133226 -98710630 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 761 665 35 0 0 chr11 23133455 23133542 -98710314 - B1_Mus2 SINE Alu -14 133 47 4 761 216 0 0 0 chr11 23133807 23133831 -98710025 + (A)n Simple_repeat Simple_repeat 1 24 0 4 761 950 45 102 29 chr11 23133867 23134004 -98709852 + B1_Mus1 SINE Alu 2 148 0 4 761 282 29 0 0 chr11 23134015 23134050 -98709806 + U2 snRNA snRNA 1 35 -153 4 761 297 128 0 0 chr11 23134053 23134100 -98709756 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 4 761 2668 127 151 4 chr11 23134131 23134596 -98709260 - RMER16 LTR ERVK 0 533 1 4 761 743 161 13 77 chr11 23134604 23134759 -98709097 + B1_Mur2 SINE Alu 5 149 0 4 761 518 301 0 7 chr11 23134818 23134955 -98708901 + B1_Mur2 SINE Alu 1 136 -13 4 761 1162 56 0 0 chr11 23134976 23135118 -98708738 - B1_Mus2 SINE Alu -5 142 1 4 761 385 169 108 0 chr11 23135135 23135218 -98708638 - B1_Mur1 SINE Alu -39 110 19 4 761 322 240 240 0 chr11 23135249 23135378 -98708478 + RSINE1 SINE B4 3 162 -3 4 761 799 194 65 28 chr11 23135377 23135594 -98708262 - ORR1C1 LTR MaLR -3 375 151 4 761 347 109 54 18 chr11 23135602 23135658 -98708198 + MERVL-int LTR ERVL 3652 3709 -1776 4 761 345 156 0 0 chr11 23135658 23135722 -98708134 - MT2A LTR ERVL -467 66 3 4 761 692 216 0 0 chr11 23135839 23135964 -98707892 - B1_Mur4 SINE Alu -20 130 6 4 761 354 306 6 94 chr11 23135964 23135998 -98707858 - ID_B1 SINE B4 -20 204 60 4 761 452 272 19 0 chr11 23135999 23136102 -98707754 - PB1D7 SINE Alu -15 105 1 4 761 456 207 54 9 chr11 23136313 23136425 -98707431 + ID_B1 SINE B4 108 224 0 4 761 204 40 0 0 chr11 23136528 23136553 -98707303 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 4 761 996 66 26 7 chr11 23136555 23136708 -98707148 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 4 761 228 267 0 0 chr11 23136712 23136757 -98707099 - B4 SINE B4 -152 140 96 4 761 209 200 0 0 chr11 23136770 23136805 -98707051 + (TATG)n Simple_repeat Simple_repeat 1 35 0 4 761 732 54 0 0 chr11 23136814 23136907 -98706949 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 4 761 649 154 19 0 chr11 23136910 23137014 -98706842 - B1_Mur3 SINE Alu -13 136 31 4 761 25 31 0 0 chr11 23137015 23137047 -98706809 + AT_rich Low_complexity Low_complexity 1 32 0 4 761 264 77 0 0 chr11 23137049 23137088 -98706768 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 761 552 240 75 0 chr11 23137095 23137241 -98706615 - B3A SINE B2 -41 157 1 4 761 252 291 106 10 chr11 23137329 23137433 -98706423 - PB1D10 SINE Alu -3 114 1 4 761 253 236 153 0 chr11 23137810 23137882 -98705974 - ID4 SINE ID 0 83 1 4 761 297 256 126 17 chr11 23137900 23138019 -98705837 - B1F1 SINE Alu 0 149 18 4 761 306 0 0 0 chr11 23138056 23138090 -98705766 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 761 258 32 0 0 chr11 23138090 23138120 -98705736 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 761 696 253 18 24 chr11 23138734 23138904 -98704952 + B3A SINE B2 2 170 -28 4 761 333 0 0 0 chr11 23138904 23138941 -98704915 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 761 376 277 50 115 chr11 23138941 23138970 -98704886 + B2_Mm2 SINE B2 163 188 -7 4 761 244 194 62 31 chr11 23139202 23139266 -98704590 - Lx8 LINE L1 -1 7472 7407 4 761 236 264 153 0 chr11 23139286 23139358 -98704498 + PB1D10 SINE Alu 1 83 -34 4 761 594 254 0 0 chr11 23139477 23139603 -98704253 - ID_B1 SINE B4 -7 217 92 4 761 413 145 13 0 chr11 23139616 23139692 -98704164 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 761 921 177 0 0 chr11 23139742 23139889 -98703967 - B1_Mus1 SINE Alu 0 148 2 4 761 186 43 0 0 chr11 23139900 23139923 -98703933 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 761 1195 55 0 7 chr11 23139923 23140061 -98703795 - B1_Mm SINE Alu -9 138 1 4 761 365 183 23 47 chr11 23140073 23140159 -98703697 - B3 SINE B2 0 216 133 4 761 367 323 6 36 chr11 23140219 23140386 -98703470 - Lx9 LINE L1 -217 7427 7266 4 761 1243 41 0 0 chr11 23140442 23140589 -98703267 + B1_Mus1 SINE Alu 2 148 0 4 761 1267 92 40 0 chr11 23140592 23140766 -98703090 - B2_Mm2 SINE B2 -14 181 1 4 761 1947 297 84 17 chr11 23140796 23141544 -98702312 - Lx9 LINE L1 -374 7270 6473 4 761 234 150 0 0 chr11 23141544 23141584 -98702272 + (T)n Simple_repeat Simple_repeat 1 40 0 4 761 231 114 0 0 chr11 23141676 23141711 -98702145 + (CAT)n Simple_repeat Simple_repeat 3 37 0 4 761 261 253 91 11 chr11 23141711 23141737 -98702119 - B1F1 SINE Alu -11 138 44 4 761 278 246 0 16 chr11 23141737 23141799 -98702057 - ID_B1 SINE B4 -39 185 125 4 761 2874 49 3 0 chr11 23141821 23142166 -98701690 - ORR1A1 LTR MaLR 0 346 1 4 761 5014 19 3 2 chr11 23142166 23142799 -98701057 - ORR1A1-int LTR MaLR 0 1792 1159 4 761 2036 116 15 6 chr11 23142799 23143128 -98700728 - IAPLTR1a_Mm LTR ERVK 0 337 6 4 761 5905 64 13 19 chr11 23143135 23143911 -98699945 - IAPEz-int LTR ERVK -2 6479 5709 4 761 3170 20 0 0 chr11 23143902 23144259 -98699597 - IAPEz-int LTR ERVK -2124 4357 4001 4 761 20007 76 42 10 chr11 23144257 23146939 -98696917 - IAPEz-int LTR ERVK -3707 2774 8 4 761 2045 121 15 6 chr11 23146939 23147273 -98696583 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 761 8041 61 16 0 chr11 23147273 23148414 -98695442 - ORR1A1-int LTR MaLR -628 1164 6 4 761 3790 51 0 7 chr11 23148419 23148870 -98694986 - MERVL-int LTR ERVL -1774 3711 3264 4 761 1295 56 2 5 chr11 23148870 23149065 -98694791 - MT2C_Mm LTR ERVL -302 191 1 4 761 436 239 53 0 chr11 23149126 23149239 -98694617 - PB1D9 SINE Alu -1 119 1 4 761 238 361 59 0 chr11 23149338 23149457 -98694399 + MER5A1 DNA MER1_type 36 161 -5 4 761 345 250 123 15 chr11 23149552 23149682 -98694174 - MER20 DNA MER1_type -21 198 55 4 761 2233 199 38 36 chr11 23149697 23150249 -98693607 + RLTR31_Mur LTR ERVK 1 553 0 4 761 714 192 0 0 chr11 23150264 23150394 -98693462 - B1_Mus1 SINE Alu 0 148 19 4 761 1079 88 0 13 chr11 23150395 23150531 -98693325 + B1_Mus1 SINE Alu 2 136 -12 4 761 261 0 0 0 chr11 23150531 23150560 -98693296 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 761 1079 88 0 13 chr11 23150560 23150572 -98693284 + B1_Mus1 SINE Alu 137 148 0 4 761 720 268 11 38 chr11 23150643 23150829 -98693027 - B3 SINE B2 -25 191 11 4 761 302 264 14 0 chr11 23151011 23151083 -98692773 - ID4_ SINE ID -9 74 2 4 761 32 26 0 0 chr11 23151083 23151122 -98692734 + AT_rich Low_complexity Low_complexity 1 39 0 4 761 2810 119 12 45 chr11 23151212 23151295 -98692561 + MT2C_Mm LTR ERVL 1 80 -395 4 761 311 0 26 0 chr11 23151295 23151334 -98692522 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 761 3047 154 36 6 chr11 23151334 23151856 -98692000 - Lx LINE L1 -9 6645 6108 4 761 2810 119 12 45 chr11 23151856 23152262 -98691594 + MT2C_Mm LTR ERVL 81 474 -1 4 761 268 54 0 0 chr11 23152367 23152404 -98691452 + B1_Mus2 SINE Alu 106 142 -5 4 761 189 121 0 0 chr11 23152409 23152442 -98691414 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 4 761 210 143 0 0 chr11 23152638 23152673 -98691183 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 4 761 1026 75 0 15 chr11 23152737 23152873 -98690983 - B1_Mus2 SINE Alu -12 135 2 4 761 231 206 127 0 chr11 23152873 23152936 -98690920 - RMER5 LTR ERV1 -463 71 1 4 761 292 228 0 137 chr11 23153174 23153291 -98690565 + MT2B LTR ERVL 156 256 -345 4 761 747 186 0 7 chr11 23153197 23153338 -98690518 + B1_Mur2 SINE Alu 10 149 0 4 761 2157 140 79 11 chr11 23153351 23153720 -98690136 - ORR1B1 LTR MaLR 0 394 1 4 761 583 188 104 15 chr11 23153771 23153906 -98689950 - B1_Mur1 SINE Alu -1 148 2 4 761 381 218 0 0 chr11 23154028 23154115 -98689741 + PB1D9 SINE Alu 34 120 0 4 761 391 324 22 0 chr11 23154394 23154533 -98689323 - ID_B1 SINE B4 0 224 83 4 761 500 134 31 3 chr11 23154597 23154701 -98689155 - B1_Mur3 SINE Alu -3 144 42 4 761 1102 50 14 0 chr11 23154952 23155091 -98688765 - B1_Mus1 SINE Alu -5 143 3 4 761 218 270 0 16 chr11 23155703 23155767 -98688089 + CT-rich Low_complexity Low_complexity 2 64 0 4 761 278 250 0 0 chr11 23156042 23156114 -98687742 + (CAG)n Simple_repeat Simple_repeat 2 73 0 4 761 222 150 0 0 chr11 23156480 23156520 -98687336 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 761 204 245 0 0 chr11 23156556 23156605 -98687251 + T-rich Low_complexity Low_complexity 1 49 0 4 761 27 73 0 0 chr11 23156748 23156803 -98687053 + GC_rich Low_complexity Low_complexity 1 55 0 4 761 25 0 0 0 chr11 23158539 23158564 -98685292 + AT_rich Low_complexity Low_complexity 1 25 0 4 761 596 137 397 19 chr11 23158564 23158720 -98685136 - B3 SINE B2 0 216 2 4 761 374 141 0 27 chr11 23158730 23158803 -98685053 + T-rich Low_complexity Low_complexity 4 74 0 4 761 817 98 120 8 chr11 23158803 23158936 -98684920 - B1_Mus1 SINE Alu 0 148 1 5 761 381 73 0 0 chr11 23159105 23159160 -98684696 + B1_Mm SINE Alu 93 147 0 5 761 278 303 91 9 chr11 23159201 23159311 -98684545 - ID_B1 SINE B4 -10 214 96 5 761 227 326 42 0 chr11 23159538 23159633 -98684223 - ID_B1 SINE B4 -52 172 74 5 761 466 287 94 23 chr11 23159670 23159841 -98684015 + B3A SINE B2 13 195 -3 5 761 1661 31 5 0 chr11 23159844 23160036 -98683820 - B2_Mm1t SINE B2 0 193 1 5 761 261 219 91 52 chr11 23160436 23160513 -98683343 + ID4_ SINE ID 2 81 -2 5 761 192 200 0 0 chr11 23160597 23160642 -98683214 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 761 259 308 77 0 chr11 23160696 23160774 -98683082 - B1_Mur2 SINE Alu -20 129 46 5 761 355 267 37 28 chr11 23160822 23160930 -98682926 - PB1D9 SINE Alu 0 120 12 5 761 238 274 0 0 chr11 23161026 23161077 -98682779 - PB1D10 SINE Alu -6 111 61 5 761 312 307 33 79 chr11 23161087 23161239 -98682617 - B1F SINE Alu 0 149 5 5 761 299 65 22 0 chr11 23161369 23161415 -98682441 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 761 738 48 19 0 chr11 23161415 23161518 -98682338 - B1_Mus1 SINE Alu -8 140 36 5 761 857 130 37 6 chr11 23161587 23161749 -98682107 + B2_Mm1a SINE B2 1 167 -26 5 761 22 56 0 0 chr11 23162028 23162064 -98681792 + AT_rich Low_complexity Low_complexity 1 36 0 5 761 639 214 116 30 chr11 23162423 23162621 -98681235 - B3 SINE B2 0 216 2 5 761 717 168 35 14 chr11 23162624 23162769 -98681087 - B1_Mus1 SINE Alu 0 148 1 5 761 696 226 193 0 chr11 23162790 23162971 -98680885 - B3 SINE B2 0 216 1 5 761 192 97 0 0 chr11 23162998 23163029 -98680827 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 5 761 349 252 100 10 chr11 23163214 23163314 -98680542 + B1_Mur1 SINE Alu 1 109 -40 5 761 339 293 19 39 chr11 23163644 23163747 -98680109 + RSINE1 SINE B4 51 151 -14 5 761 559 153 51 0 chr11 23164060 23164158 -98679698 - B1_Mur2 SINE Alu -10 139 37 5 761 828 238 62 0 chr11 23164320 23164513 -98679343 + B3 SINE B2 2 206 -10 5 761 435 264 301 0 chr11 23164594 23164757 -98679099 - B3 SINE B2 0 216 5 5 761 261 0 0 0 chr11 23164757 23164786 -98679070 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 761 216 0 0 0 chr11 23164842 23164866 -98678990 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 761 226 284 60 0 chr11 23164880 23164903 -98678953 + PB1D10 SINE Alu 43 112 -4 5 761 240 209 0 0 chr11 23164903 23164946 -98678910 + ID_B1 SINE B4 177 219 -5 5 761 587 191 121 0 chr11 23165092 23165233 -98678623 - ID_B1 SINE B4 -63 161 4 5 761 891 87 0 0 chr11 23165394 23165520 -98678336 - B1_Mus2 SINE Alu -21 126 1 5 761 231 341 35 0 chr11 23165679 23165764 -98678092 + PB1D10 SINE Alu 22 109 -8 5 761 436 205 149 18 chr11 23166051 23166165 -98677691 - B1_Mur1 SINE Alu -20 129 1 5 761 260 243 90 128 chr11 23166263 23166419 -98677437 + B4 SINE B4 74 223 -69 5 761 678 121 59 29 chr11 23166286 23166422 -98677434 + B1_Mus1 SINE Alu 9 148 0 5 761 390 308 0 40 chr11 23166459 23166584 -98677272 + B3A SINE B2 1 120 -78 5 761 28 29 0 0 chr11 23166664 23166699 -98677157 + AT_rich Low_complexity Low_complexity 1 35 0 5 761 250 230 0 26 chr11 23166761 23166804 -98677052 + T-rich Low_complexity Low_complexity 33 74 0 5 761 1047 110 7 0 chr11 23166804 23166950 -98676906 - B1_Mus2 SINE Alu 0 147 1 5 761 250 230 0 26 chr11 23166950 23166982 -98676874 + T-rich Low_complexity Low_complexity 1 32 0 5 761 350 219 26 52 chr11 23167434 23167511 -98676345 - B3A SINE B2 -35 163 89 5 761 22 0 0 0 chr11 23168212 23168234 -98675622 + AT_rich Low_complexity Low_complexity 1 22 0 5 761 282 73 0 0 chr11 23169170 23169211 -98674645 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 761 345 24 0 0 chr11 23169211 23169253 -98674603 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 761 21 71 0 0 chr11 23169474 23169516 -98674340 + AT_rich Low_complexity Low_complexity 1 42 0 5 761 1017 70 41 21 chr11 23171628 23171773 -98672083 - B1_Mus1 SINE Alu 0 148 1 5 761 297 51 0 0 chr11 23171775 23171814 -98672042 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 761 216 338 54 0 chr11 23171862 23171936 -98671920 - B3 SINE B2 -52 164 87 5 761 754 179 30 0 chr11 23171945 23172079 -98671777 + B1_Mus1 SINE Alu 1 138 -10 5 761 317 24 24 0 chr11 23172079 23172121 -98671735 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 761 372 255 92 0 chr11 23172174 23172272 -98671584 + B2_Mm1t SINE B2 61 167 -26 5 761 302 200 100 0 chr11 23172316 23172386 -98671470 - B3A SINE B2 -120 78 2 5 761 574 255 7 27 chr11 23173028 23173177 -98670679 - B1_Mus2 SINE Alu -1 146 1 5 761 330 241 174 9 chr11 23173446 23173555 -98670301 - B3A SINE B2 -65 133 7 5 761 279 197 113 0 chr11 23173845 23173916 -98669940 - B1_Mur3 SINE Alu -39 110 32 5 761 263 226 95 121 chr11 23173960 23174076 -98669780 + PB1D9 SINE Alu 1 113 -7 5 761 1454 78 0 0 chr11 23174112 23174304 -98669552 - B2_Mm1a SINE B2 0 193 2 5 761 1082 126 38 5 chr11 23174489 23174673 -98669183 - B2_Mm2 SINE B2 -3 192 3 5 761 444 197 34 13 chr11 23174677 23174777 -98669079 - PB1D9 SINE Alu 0 149 37 5 761 278 272 9 148 chr11 23175289 23175397 -98668459 + B3A SINE B2 10 102 -96 5 761 392 215 38 0 chr11 23175468 23175547 -98668309 + B1_Mus1 SINE Alu 1 82 -66 5 761 22 0 0 0 chr11 23175548 23175570 -98668286 + AT_rich Low_complexity Low_complexity 1 22 0 5 761 234 313 23 81 chr11 23175906 23175993 -98667863 - ID2 SINE ID 0 83 2 5 761 214 43 109 0 chr11 23176113 23176159 -98667697 + T-rich Low_complexity Low_complexity 3 53 0 5 761 756 94 146 23 chr11 23176159 23176289 -98667567 - B1_Mus2 SINE Alu 0 147 2 5 761 24 85 0 0 chr11 23176381 23176440 -98667416 + AT_rich Low_complexity Low_complexity 1 59 0 5 761 357 202 89 116 chr11 23176542 23176654 -98667202 - RSINE1 SINE B4 0 165 57 5 761 36 0 0 0 chr11 23176698 23176734 -98667122 + AT_rich Low_complexity Low_complexity 1 36 0 5 761 273 331 86 0 chr11 23176735 23176886 -98666970 - RSINE1 SINE B4 0 165 2 5 761 308 299 110 7 chr11 23177175 23177330 -98666526 - B3 SINE B2 0 216 46 5 761 926 87 58 0 chr11 23178399 23178537 -98665319 - B1_Mm SINE Alu 0 147 2 5 761 180 77 0 0 chr11 23178644 23178670 -98665186 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 761 221 272 191 46 chr11 23179159 23179290 -98664566 - RSINE1 SINE B4 -14 151 2 5 761 632 94 248 33 chr11 23179313 23179434 -98664422 + B1_Mus2 SINE Alu 1 147 0 5 761 577 59 0 23 chr11 23179623 23179710 -98664146 + B2_Mm2 SINE B2 1 85 -110 5 761 254 287 19 19 chr11 23179710 23179726 -98664130 + RSINE1 SINE B4 2 104 -61 5 761 472 238 193 72 chr11 23180112 23180293 -98663563 - B3 SINE B2 -5 211 9 5 761 35 24 0 0 chr11 23180330 23180372 -98663484 + AT_rich Low_complexity Low_complexity 1 42 0 5 761 1195 71 13 0 chr11 23180625 23180780 -98663076 + B2_Mm2 SINE B2 1 157 -38 5 761 203 29 0 81 chr11 23180780 23180817 -98663039 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 761 471 246 13 34 chr11 23181536 23181676 -98662180 - B1_Mus1 SINE Alu -7 141 1 5 761 207 0 0 0 chr11 23181681 23181704 -98662152 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 761 662 93 269 0 chr11 23181704 23181812 -98662044 - B1_Mm SINE Alu -9 138 2 5 761 598 191 69 56 chr11 23182287 23182431 -98661425 - B1_Mus1 SINE Alu 0 148 3 5 761 1103 89 7 0 chr11 23182829 23182975 -98660881 - B1_Mus1 SINE Alu 0 148 2 5 761 1623 21 11 0 chr11 23182993 23183183 -98660673 - B2_Mm1t SINE B2 0 193 2 5 761 1022 144 77 6 chr11 23183194 23183230 -98660626 - B2_Mm2 SINE B2 0 195 146 5 761 212 86 29 0 chr11 23183230 23183265 -98660591 + (CATA)n Simple_repeat Simple_repeat 2 37 0 5 761 1022 144 77 6 chr11 23183265 23183409 -98660447 - B2_Mm2 SINE B2 -50 145 2 5 761 313 298 15 69 chr11 23183559 23183578 -98660278 + MT2B LTR ERVL 156 201 -400 5 761 400 183 49 0 chr11 23183578 23183660 -98660196 + PB1D9 SINE Alu 12 97 -23 5 761 313 298 15 69 chr11 23183660 23183689 -98660167 + MT2B LTR ERVL 202 278 -323 5 761 315 288 27 0 chr11 23183750 23183823 -98660033 - ID_B1 SINE B4 -63 161 87 5 761 1115 65 0 0 chr11 23184010 23184148 -98659708 - B1_Mus2 SINE Alu -9 138 1 5 761 437 326 66 31 chr11 23185237 23185433 -98658423 - B3 SINE B2 -4 212 10 5 761 285 317 74 94 chr11 23185466 23185668 -98658188 + B3A SINE B2 1 198 0 5 761 236 299 45 11 chr11 23186150 23186238 -98657618 - B4A SINE B4 -194 98 8 5 761 360 328 50 14 chr11 23186287 23186426 -98657430 + ID_B1 SINE B4 81 224 0 5 761 180 279 47 0 chr11 23186885 23186928 -98656928 - L4 LINE RTE -487 1542 1498 5 761 390 295 61 18 chr11 23188073 23188187 -98655669 + RSINE1 SINE B4 17 135 -30 5 761 861 75 142 0 chr11 23188444 23188564 -98655292 + B1_Mm SINE Alu 1 137 -10 5 761 252 59 0 0 chr11 23188564 23188598 -98655258 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 761 1454 48 21 0 chr11 23188833 23189020 -98654836 - B2_Mm2 SINE B2 -3 192 2 6 761 1205 106 0 6 chr11 23189272 23189453 -98654403 - L1_Mus1 LINE L1 0 6567 6388 6 761 326 287 35 0 chr11 23189516 23189603 -98654253 + PB1D7 SINE Alu 13 102 -18 6 761 448 193 146 9 chr11 23190224 23190334 -98653522 - B1_Mus1 SINE Alu -23 125 1 6 761 1089 76 7 0 chr11 23190364 23190508 -98653348 + B1_Mm SINE Alu 1 145 -2 6 761 351 161 223 114 chr11 23190721 23190850 -98653006 + B2_Mm2 SINE B2 22 173 -22 6 761 1091 103 0 0 chr11 23190850 23190996 -98652860 - B1_Mus1 SINE Alu -1 147 2 6 761 351 137 246 127 chr11 23190996 23191019 -98652837 + B2_Mm2 SINE B2 174 189 -6 6 761 449 206 10 40 chr11 23191231 23191332 -98652524 + B1_Mm SINE Alu 48 145 -2 6 761 206 32 32 0 chr11 23191942 23191973 -98651883 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 761 352 231 154 0 chr11 23191978 23192056 -98651800 - B1_Mus2 SINE Alu -55 92 3 6 761 249 292 133 11 chr11 23192202 23192257 -98651599 + B3 SINE B2 105 159 -57 6 761 375 23 0 0 chr11 23192257 23192301 -98651555 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 761 249 292 133 11 chr11 23192301 23192335 -98651521 + B3 SINE B2 160 204 -12 6 761 288 258 15 0 chr11 23192490 23192556 -98651300 - URR1B DNA MER1_type -154 71 5 6 761 577 294 35 30 chr11 23192558 23192758 -98651098 - B3 SINE B2 -15 201 1 6 761 295 266 62 12 chr11 23192764 23192844 -98651012 - PB1D7 SINE Alu -6 114 31 6 761 349 222 0 14 chr11 23192882 23192955 -98650901 - B3 SINE B2 -6 210 139 6 761 310 218 146 26 chr11 23193387 23193519 -98650337 + B1_Mus2 SINE Alu 3 143 -6 6 761 207 93 22 44 chr11 23193548 23193593 -98650263 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 6 761 923 52 2 15 chr11 23193593 23193723 -98650133 - B1_Mus1 SINE Alu -1 147 19 6 761 387 272 16 2 chr11 23194204 23194321 -98649535 - B3A SINE B2 -70 125 5 6 761 566 206 113 15 chr11 23194928 23195061 -98648795 - B1_Mus2 SINE Alu 0 147 2 6 761 235 320 9 112 chr11 23195214 23195330 -98648526 - PB1 SINE Alu 0 127 24 6 761 425 240 80 0 chr11 23195621 23195721 -98648135 + PB1D9 SINE Alu 2 109 -11 6 761 180 77 0 0 chr11 23196884 23196910 -98646946 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 761 439 219 138 0 chr11 23197119 23197242 -98646614 + B1_Mur2 SINE Alu 3 142 -7 6 761 700 154 131 0 chr11 23197341 23197471 -98646385 - B1_Mus1 SINE Alu 0 148 2 6 761 338 227 54 54 chr11 23197472 23197565 -98646291 + B1_Mur2 SINE Alu 57 149 0 6 761 380 283 33 0 chr11 23198306 23198398 -98645458 - RSINE1 SINE B4 -67 98 4 6 761 340 167 83 0 chr11 23198493 23198565 -98645291 + B3A SINE B2 1 78 -120 6 761 860 110 63 0 chr11 23198635 23198762 -98645094 + B1_Mus1 SINE Alu 1 135 -13 6 761 387 267 0 0 chr11 23198802 23198888 -98644968 + B1_Mus1 SINE Alu 18 103 -45 6 761 731 133 62 75 chr11 23198906 23199052 -98644804 - B1_Mus1 SINE Alu -4 144 1 6 95 1058 112 94 0 chr11 23199656 23199826 -98644030 - B2_Mm2 SINE B2 -8 187 2 6 762 1207 184 21 5 chr11 23199855 23200117 -98643739 + RMER1B Other Other 658 897 -169 6 762 1201 250 74 60 chr11 23200341 23200770 -98643086 + RMER1C Other Other 395 1145 -197 6 762 1174 62 7 0 chr11 23200770 23200915 -98642941 + B1_Mus1 SINE Alu 2 147 -1 6 762 1201 246 77 62 chr11 23200915 23200983 -98642873 + RMER1C Other Other 1146 1193 -149 6 762 22 35 0 0 chr11 23200983 23201012 -98642844 + AT_rich Low_complexity Low_complexity 1 29 0 6 762 820 265 97 70 chr11 23201199 23201393 -98642463 - Lx7 LINE L1 -607 7089 6893 6 762 1184 61 0 0 chr11 23201393 23201540 -98642316 - B1_Mus1 SINE Alu 0 148 2 6 762 820 271 109 76 chr11 23201540 23201884 -98641972 - Lx7 LINE L1 -553 6920 6519 6 762 1106 88 7 0 chr11 23201884 23202031 -98641825 - B1_Mus1 SINE Alu 0 148 1 6 762 637 291 148 92 chr11 23202031 23202112 -98641744 - Lx7 LINE L1 -955 6518 6439 6 762 282 309 48 113 chr11 23202112 23202139 -98641717 - B4A SINE B4 -42 250 150 6 762 697 191 14 42 chr11 23202139 23202281 -98641575 - B1_Mur3 SINE Alu -2 147 10 6 762 345 220 55 142 chr11 23202182 23202309 -98641547 - MT2B LTR ERVL -344 257 142 6 762 282 309 48 113 chr11 23202281 23202298 -98641558 - B4A SINE B4 -42 149 77 6 762 238 250 105 23 chr11 23202309 23202395 -98641461 - Lx7 LINE L1 -1065 6408 6316 6 762 639 224 41 77 chr11 23202461 23202608 -98641248 - B3A SINE B2 -30 168 22 6 762 1399 38 35 70 chr11 23202608 23202808 -98641048 + B2_Mm1a SINE B2 1 193 0 6 762 639 224 41 77 chr11 23202808 23202829 -98641027 - B3A SINE B2 -177 21 6 6 762 262 224 45 0 chr11 23202835 23202902 -98640954 - Lx7 LINE L1 -1272 6201 6132 6 762 356 125 0 15 chr11 23202906 23202971 -98640885 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 6 762 1057 70 0 21 chr11 23202971 23203116 -98640740 - B1_Mus2 SINE Alu 0 147 6 6 762 276 274 16 71 chr11 23203124 23203250 -98640606 - Lx7 LINE L1 -1484 5989 5871 6 762 249 265 29 14 chr11 23203307 23203376 -98640480 - B3A SINE B2 -124 74 5 6 762 673 308 31 81 chr11 23203368 23203629 -98640227 - B4A SINE B4 -43 249 2 6 762 365 364 47 0 chr11 23203906 23204035 -98639821 - B1F2 SINE Alu -5 144 10 6 762 717 223 14 0 chr11 23204176 23204315 -98639541 - B1_Mus1 SINE Alu -7 141 1 6 762 346 324 0 9 chr11 23204409 23204521 -98639335 + PB1D10 SINE Alu 1 111 -6 6 762 360 64 0 0 chr11 23205181 23205228 -98638628 + (TATG)n Simple_repeat Simple_repeat 1 47 0 6 762 751 214 26 7 chr11 23205234 23205389 -98638467 - B3 SINE B2 -58 158 1 6 762 1610 36 0 10 chr11 23205404 23205598 -98638258 - B2_Mm1t SINE B2 0 193 2 6 762 272 259 111 0 chr11 23205706 23205787 -98638069 - PB1D7 SINE Alu -30 90 1 6 762 25 0 0 0 chr11 23206316 23206341 -98637515 + GC_rich Low_complexity Low_complexity 1 25 0 6 762 198 71 0 0 chr11 23206602 23206630 -98637226 + (CGG)n Simple_repeat Simple_repeat 2 29 0 6 762 229 262 16 0 chr11 23206658 23206719 -98637137 + C-rich Low_complexity Low_complexity 2 63 0 6 762 263 200 43 18 chr11 23206749 23206912 -98636944 + C-rich Low_complexity Low_complexity 2 168 0 6 762 789 158 56 128 chr11 23208377 23208573 -98635283 - B3A SINE B2 -16 182 1 6 762 21 0 0 0 chr11 23208978 23208999 -98634857 + GC_rich Low_complexity Low_complexity 1 21 0 6 762 332 243 18 53 chr11 23209137 23209250 -98634606 + PB1D10 SINE Alu 1 109 -8 6 762 242 296 28 0 chr11 23209264 23209335 -98634521 + ID4_ SINE ID 4 76 -7 6 762 237 176 46 157 chr11 23209370 23209478 -98634378 - B2_Mm2 SINE B2 -3 192 97 6 762 605 167 39 16 chr11 23209659 23209787 -98634069 - B1_Mur4 SINE Alu -1 149 19 6 762 289 269 109 55 chr11 23209983 23210093 -98633763 + PB1D10 SINE Alu 1 116 -1 6 762 1021 83 0 0 chr11 23210591 23210723 -98633133 + B1_Mus1 SINE Alu 2 133 -15 6 762 1436 60 38 0 chr11 23210771 23210956 -98632900 - B2_Mm2 SINE B2 -3 192 1 6 762 222 0 25 50 chr11 23210974 23210994 -98632862 + (CAAAA)n Simple_repeat Simple_repeat 2 20 0 6 762 1502 48 27 0 chr11 23210994 23211181 -98632675 + B2_Mm1t SINE B2 2 193 0 6 762 222 0 25 50 chr11 23211181 23211200 -98632656 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 762 263 284 97 35 chr11 23211277 23211390 -98632466 - PB1D7 SINE Alu 0 120 1 6 762 765 181 36 0 chr11 23211495 23211633 -98632223 - B1_Mur3 SINE Alu -1 148 6 6 762 857 265 35 0 chr11 23211682 23211882 -98631974 + B3 SINE B2 1 207 -9 6 762 677 284 6 36 chr11 23211949 23212117 -98631739 - B3 SINE B2 -53 163 1 6 762 206 143 0 28 chr11 23212125 23212161 -98631695 + (CCTA)n Simple_repeat Simple_repeat 3 37 0 6 762 613 197 86 8 chr11 23212161 23212289 -98631567 - B1_Mur3 SINE Alu -3 146 9 6 762 285 239 103 93 chr11 23212202 23212299 -98631557 - MT2B LTR ERVL -343 258 161 6 762 216 0 0 0 chr11 23212299 23212323 -98631533 + (A)n Simple_repeat Simple_repeat 1 24 0 6 762 246 32 0 0 chr11 23212483 23212514 -98631342 + (CAA)n Simple_repeat Simple_repeat 1 31 0 6 762 437 289 48 32 chr11 23212537 23212662 -98631194 + B3A SINE B2 2 128 -70 6 762 731 239 112 0 chr11 23212713 23212901 -98630955 + ID_B1 SINE B4 1 209 -15 6 762 191 32 0 61 chr11 23213239 23213272 -98630584 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 6 762 1218 41 7 0 chr11 23213272 23213419 -98630437 - B1_Mus1 SINE Alu 0 148 1 6 762 714 110 267 7 chr11 23213428 23213574 -98630282 - B2_Mm2 SINE B2 -10 185 2 6 762 1160 48 14 0 chr11 23213926 23214071 -98629785 - B1_Mm SINE Alu 0 147 1 6 762 840 123 7 61 chr11 23214071 23214218 -98629638 + B1_Mur3 SINE Alu 11 149 0 6 762 774 254 5 38 chr11 23214248 23214432 -98629424 + ID_B1 SINE B4 47 224 0 6 762 1303 100 21 0 chr11 23214584 23214774 -98629082 - B2_Mm2 SINE B2 0 195 2 6 762 225 291 105 0 chr11 23214841 23214927 -98628929 - PB1D9 SINE Alu -16 104 10 6 762 24 67 0 0 chr11 23214962 23215007 -98628849 + AT_rich Low_complexity Low_complexity 1 45 0 6 762 609 170 0 0 chr11 23215018 23215130 -98628726 + (TG)n Simple_repeat Simple_repeat 2 113 0 6 762 627 332 35 5 chr11 23215135 23215332 -98628524 - B3 SINE B2 -13 203 1 6 762 405 286 108 31 chr11 23215455 23215585 -98628271 - RSINE1 SINE B4 -5 160 21 6 762 335 190 165 0 chr11 23215623 23215702 -98628154 - B1_Mur1 SINE Alu -22 127 36 6 762 24 0 0 0 chr11 23215804 23215828 -98628028 + AT_rich Low_complexity Low_complexity 1 24 0 6 762 464 188 0 0 chr11 23215834 23215914 -98627942 - ID_B1 SINE B4 -1 223 144 6 762 211 333 95 36 chr11 23216112 23216196 -98627660 - B1F SINE Alu -60 89 1 6 762 232 305 8 0 chr11 23216230 23216361 -98627495 + (TGG)n Simple_repeat Simple_repeat 3 134 0 6 762 655 161 96 8 chr11 23216363 23216488 -98627368 - B1_Mur4 SINE Alu -11 139 4 6 762 576 264 12 65 chr11 23216570 23216740 -98627116 + B2_Mm2 SINE B2 2 162 -33 6 762 415 248 63 76 chr11 23216816 23216950 -98626906 + PB1D10 SINE Alu 2 136 -13 6 762 583 266 29 7 chr11 23217065 23217205 -98626651 - B3 SINE B2 -34 182 40 7 762 850 242 62 67 chr11 23217239 23217447 -98626409 - B3 SINE B2 0 216 10 7 762 322 250 0 0 chr11 23217487 23217551 -98626305 - PB1D10 SINE Alu -42 75 12 7 762 28 79 0 0 chr11 23217811 23217874 -98625982 + AT_rich Low_complexity Low_complexity 1 63 0 7 762 378 299 36 72 chr11 23217875 23218041 -98625815 - RSINE1 SINE B4 -4 161 2 7 762 788 255 10 15 chr11 23218054 23218249 -98625607 - B3A SINE B2 -1 197 4 7 762 246 128 0 0 chr11 23218411 23218450 -98625406 + (T)n Simple_repeat Simple_repeat 1 39 0 7 762 1269 27 0 0 chr11 23218450 23218597 -98625259 - B1_Mus2 SINE Alu 0 147 1 7 762 710 269 35 10 chr11 23218681 23218884 -98624972 - B3 SINE B2 -7 209 2 7 762 503 253 95 62 chr11 23218886 23218925 -98624931 - CYRA11_Mm Unknown Y-chromosome -234 383 203 7 762 1029 133 6 6 chr11 23218925 23219091 -98624765 + URR1A DNA MER1_type 61 226 0 7 762 451 366 19 19 chr11 23219221 23219377 -98624479 + RSINE1 SINE B4 3 158 -7 7 762 719 171 19 82 chr11 23219460 23219619 -98624237 + B1_Mur3 SINE Alu 1 149 0 7 762 509 275 93 29 chr11 23219959 23220131 -98623725 + B3A SINE B2 2 184 -14 7 762 294 104 42 0 chr11 23220181 23220229 -98623627 - B1_Mur1 SINE Alu -1 148 99 7 762 469 186 238 16 chr11 23220346 23220515 -98623341 + MTD LTR MaLR 196 401 -18 7 762 419 171 53 3 chr11 23221008 23221106 -98622750 - B1_Mur4 SINE Alu -5 145 2 7 762 1551 53 5 0 chr11 23221400 23221589 -98622267 - B2_Mm1a SINE B2 -3 190 1 7 762 522 271 26 19 chr11 23221792 23221946 -98621910 + RSINE1 SINE B4 3 157 -8 7 762 494 138 330 0 chr11 23221953 23222062 -98621794 - B1_Mus1 SINE Alu -3 145 1 7 762 1211 96 16 31 chr11 23222074 23222268 -98621588 - B2_Mm2 SINE B2 -3 192 2 7 762 552 68 0 0 chr11 23222283 23222356 -98621500 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 7 762 596 189 64 64 chr11 23222359 23222500 -98621356 - B1_Mur2 SINE Alu -7 142 2 7 762 301 176 0 29 chr11 23222578 23222648 -98621208 + B2_Mm2 SINE B2 109 176 -19 7 762 757 274 68 0 chr11 23222667 23222857 -98620999 + B3 SINE B2 10 212 -4 7 762 429 256 114 23 chr11 23222875 23223007 -98620849 + B1_Mur1 SINE Alu 5 148 -1 7 762 730 207 7 27 chr11 23223022 23223171 -98620685 + B1_Mur4 SINE Alu 5 150 0 7 762 416 216 82 0 chr11 23223292 23223389 -98620467 + PB1D10 SINE Alu 13 117 0 7 762 548 221 19 99 chr11 23223508 23223522 -98620334 - B1_Mur3 SINE Alu 0 149 138 7 762 237 33 0 0 chr11 23223522 23223552 -98620304 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 762 548 221 19 99 chr11 23223552 23223698 -98620158 - B1_Mur3 SINE Alu -12 137 2 7 762 819 222 52 11 chr11 23224131 23224322 -98619534 - B3 SINE B2 -15 201 3 7 762 1185 55 0 0 chr11 23224625 23224771 -98619085 - B1_Mus1 SINE Alu 0 148 3 7 762 1017 120 26 26 chr11 23224781 23224970 -98618886 - L1_Mus2 LINE L1 0 6566 6378 7 762 339 244 155 9 chr11 23225172 23225288 -98618568 + B1_Mur1 SINE Alu 4 136 -13 7 762 235 235 49 0 chr11 23225571 23225652 -98618204 - HAL1 LINE L1 -443 2064 1980 7 762 318 337 27 11 chr11 23225836 23226022 -98617834 - HAL1 LINE L1 -815 1692 1504 7 762 240 288 24 63 chr11 23226330 23226456 -98617400 - RLTR25B LTR ERVK -466 562 442 7 762 827 100 25 0 chr11 23226371 23226491 -98617365 - B1_Mur3 SINE Alu -21 128 6 7 762 438 198 8 121 chr11 23226385 23226517 -98617339 - MT2B LTR ERVL -337 264 148 7 762 812 280 83 10 chr11 23226517 23226869 -98616987 + Lx7 LINE L1 5593 5971 -1673 7 762 235 316 51 0 chr11 23227474 23227553 -98616303 - ID SINE ID -141 83 1 7 762 441 36 0 0 chr11 23227633 23227688 -98616168 + (CATA)n Simple_repeat Simple_repeat 2 56 0 7 762 936 208 221 53 chr11 23227693 23228033 -98615823 + MTD LTR MaLR 23 419 0 7 762 2043 226 37 207 chr11 23228035 23228524 -98615332 + MTD-int LTR MaLR 2 505 -753 7 762 2748 135 116 12 chr11 23228524 23229035 -98614821 - RLTR12A LTR ERVK -4 564 1 7 762 2043 226 37 207 chr11 23229035 23229462 -98614394 + MTD-int LTR MaLR 506 762 -496 7 762 983 210 92 42 chr11 23229460 23229743 -98614113 + MTD LTR MaLR 109 405 -14 7 762 227 79 26 0 chr11 23229918 23229956 -98613900 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 7 762 1190 62 0 0 chr11 23229957 23230103 -98613753 - B1_Mus2 SINE Alu -1 146 1 7 762 310 244 26 0 chr11 23230270 23230348 -98613508 - B1_Mus2 SINE Alu 0 147 68 7 762 279 0 0 0 chr11 23230409 23230440 -98613416 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 7 762 353 208 143 20 chr11 23230590 23230688 -98613168 - PB1D9 SINE Alu -1 119 10 7 762 1059 208 18 23 chr11 23230711 23230928 -98612928 - B3 SINE B2 0 216 1 7 762 1244 41 0 0 chr11 23231001 23231148 -98612708 - B1_Mus1 SINE Alu 0 148 2 7 762 338 289 89 0 chr11 23231260 23231350 -98612506 + PB1D10 SINE Alu 6 103 -14 7 762 237 303 26 26 chr11 23231361 23231439 -98612417 + ID4 SINE ID 2 79 -4 7 762 296 171 228 79 chr11 23231504 23231618 -98612238 - B1_Mur1 SINE Alu 0 149 19 7 762 499 301 30 0 chr11 23231677 23231810 -98612046 + B3A SINE B2 40 176 -22 7 762 626 266 14 7 chr11 23231817 23231961 -98611895 + B1_Mur1 SINE Alu 3 147 -2 7 762 1391 66 50 0 chr11 23232126 23232308 -98611548 - B2_Mm2 SINE B2 -3 192 2 7 762 365 391 51 0 chr11 23232436 23232592 -98611264 - MLT1F1 LTR MaLR -392 177 14 7 762 203 0 0 36 chr11 23232904 23232932 -98610924 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 762 511 219 26 26 chr11 23233154 23233271 -98610585 - PB1D9 SINE Alu -1 119 3 7 762 403 235 64 29 chr11 23234010 23234150 -98609706 - B1F1 SINE Alu 0 149 5 7 762 372 298 68 47 chr11 23234282 23234295 -98609561 + B3 SINE B2 27 39 -177 7 762 293 225 0 53 chr11 23234295 23234370 -98609486 + ID4_ SINE ID 2 72 -11 7 762 372 298 68 47 chr11 23234370 23234471 -98609385 + B3 SINE B2 40 149 -67 7 762 3210 43 13 0 chr11 23234471 23234862 -98608994 + MTA_Mm LTR MaLR 1 396 0 7 762 372 302 60 60 chr11 23234862 23234920 -98608936 + B3 SINE B2 150 197 -1 7 762 195 42 0 0 chr11 23234952 23234976 -98608880 + (T)n Simple_repeat Simple_repeat 1 24 0 7 762 604 53 124 21 chr11 23234976 23235073 -98608783 - B1_Mm SINE Alu 0 147 41 7 762 282 339 49 79 chr11 23235435 23235701 -98608155 - MLT1H LTR MaLR -221 328 71 7 762 672 333 78 0 chr11 23235730 23235910 -98607946 - ID_B1 SINE B4 -29 195 2 7 762 504 262 19 0 chr11 23235999 23236106 -98607750 - B1_Mur1 SINE Alu -14 135 27 7 762 277 317 10 10 chr11 23236115 23236217 -98607639 + CT-rich Low_complexity Low_complexity 4 105 0 7 762 224 122 0 24 chr11 23236220 23236262 -98607594 + (CCCCCT)n Simple_repeat Simple_repeat 2 42 0 7 762 432 216 55 82 chr11 23236291 23236437 -98607419 - B1_Mur4 SINE Alu -8 142 1 7 762 700 209 170 0 chr11 23236696 23236878 -98606978 + B3 SINE B2 1 213 -3 7 762 384 229 28 19 chr11 23237027 23237134 -98606722 - B1_Mur2 SINE Alu -1 148 41 7 762 417 319 44 15 chr11 23237164 23237301 -98606555 + B1F SINE Alu 1 141 -8 7 762 35 0 0 0 chr11 23237541 23237576 -98606280 + AT_rich Low_complexity Low_complexity 1 35 0 7 762 246 319 41 14 chr11 23238287 23238360 -98605496 - ID4_ SINE ID -7 76 2 7 762 225 200 70 35 chr11 23238383 23238440 -98605416 - PB1 SINE Alu -19 108 50 7 762 25 31 0 0 chr11 23238572 23238604 -98605252 + AT_rich Low_complexity Low_complexity 1 32 0 7 762 1115 88 0 0 chr11 23238664 23238812 -98605044 - B1_Mus1 SINE Alu 0 148 1 7 762 547 259 131 12 chr11 23238944 23239112 -98604744 - B3 SINE B2 -2 214 27 7 762 432 126 262 2 chr11 23239122 23239233 -98604623 - B1_Mus2 SINE Alu -3 147 2 7 762 759 198 250 0 chr11 23239241 23239413 -98604443 - B3 SINE B2 -1 215 1 7 762 231 175 50 0 chr11 23239413 23239453 -98604403 - B3A SINE B2 -156 42 1 7 762 349 223 245 0 chr11 23239465 23239559 -98604297 + B1_Mm SINE Alu 2 118 -29 7 762 329 271 11 86 chr11 23239692 23239785 -98604071 - ID_B1 SINE B4 -7 217 132 7 762 274 319 78 9 chr11 23239785 23239809 -98604047 - B1_Mus1 SINE Alu 0 123 14 7 762 215 352 70 23 chr11 23239825 23239953 -98603903 - B1F SINE Alu -2 147 14 7 762 420 313 163 0 chr11 23239980 23240146 -98603710 + ID_B1 SINE B4 31 223 -1 7 762 537 234 42 111 chr11 23240305 23240449 -98603407 - RSINE1 SINE B4 -3 162 29 7 762 271 245 0 0 chr11 23240933 23240986 -98602870 - tRNA-Ala-GCA tRNA tRNA -20 55 3 7 762 189 0 0 0 chr11 23241390 23241411 -98602445 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 762 366 270 66 50 chr11 23241420 23241437 -98602419 + B1F1 SINE Alu 18 140 -9 7 762 533 211 29 0 chr11 23241437 23241541 -98602315 + ID_B1 SINE B4 109 215 -9 7 762 259 306 20 30 chr11 23241572 23241673 -98602183 + PB1D10 SINE Alu 1 100 -17 7 762 622 235 113 36 chr11 23241674 23241868 -98601988 - B3 SINE B2 0 216 8 7 762 744 128 96 0 chr11 23241966 23242091 -98601765 - B1_Mur4 SINE Alu -13 137 1 7 762 888 116 27 27 chr11 23242158 23242308 -98601548 - B1_Mur4 SINE Alu 0 150 1 7 762 302 237 17 0 chr11 23242783 23242842 -98601014 - tRNA-Ala-GCY_ tRNA tRNA -6 69 10 7 762 344 267 108 10 chr11 23242910 23243012 -98600844 + PB1D10 SINE Alu 1 112 -5 7 762 743 203 230 11 chr11 23244107 23244281 -98599575 + B3 SINE B2 2 213 -3 7 762 435 250 109 0 chr11 23244405 23244533 -98599323 - B1_Mur3 SINE Alu -3 146 5 8 762 298 381 23 23 chr11 23244544 23244721 -98599135 - 7SK RNA RNA -136 195 19 8 762 57 39 0 0 chr11 23244959 23245037 -98598819 + AT_rich Low_complexity Low_complexity 1 78 0 8 762 24 77 0 0 chr11 23245227 23245279 -98598577 + AT_rich Low_complexity Low_complexity 1 52 0 8 762 1398 90 16 0 chr11 23245608 23245796 -98598060 + B2_Mm2 SINE B2 3 193 -2 8 762 381 309 175 60 chr11 23245831 23246082 -98597774 + B4 SINE B4 2 281 -11 8 762 25 0 0 0 chr11 23246220 23246245 -98597611 + AT_rich Low_complexity Low_complexity 1 25 0 8 762 1193 109 16 21 chr11 23246656 23246844 -98597012 - B2_Mm2 SINE B2 -7 188 2 8 762 904 225 82 0 chr11 23247082 23247264 -98596592 + B3 SINE B2 1 197 -19 8 762 21 0 0 0 chr11 23247277 23247298 -98596558 + AT_rich Low_complexity Low_complexity 1 21 0 8 762 543 227 33 25 chr11 23247606 23247728 -98596128 + B3 SINE B2 88 210 -6 8 762 207 100 0 0 chr11 23247736 23247766 -98596090 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 8 762 315 257 0 67 chr11 23247766 23247841 -98596015 + B4A SINE B4 223 292 0 8 762 296 289 57 36 chr11 23248355 23248495 -98595361 - MLT1H LTR MaLR -395 154 12 8 762 435 288 51 25 chr11 23248863 23249020 -98594836 + RSINE1 SINE B4 5 165 0 8 762 508 215 250 0 chr11 23249513 23249685 -98594171 + B3 SINE B2 2 216 0 8 762 420 82 0 0 chr11 23249872 23249933 -98593923 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 762 635 303 79 86 chr11 23249935 23249985 -98593871 - B4A SINE B4 -23 269 219 8 762 3589 51 7 0 chr11 23249985 23250436 -98593420 - L1Md_T LINE L1 0 6582 6129 8 762 635 303 79 86 chr11 23250436 23250652 -98593204 - B4A SINE B4 -74 218 5 8 762 421 276 0 0 chr11 23250712 23250810 -98593046 - PB1D10 SINE Alu -19 98 1 8 762 23 54 0 0 chr11 23250810 23250847 -98593009 + AT_rich Low_complexity Low_complexity 1 37 0 8 762 415 266 11 0 chr11 23250853 23250947 -98592909 - PB1D10 SINE Alu -9 108 14 8 762 484 245 90 9 chr11 23251706 23251817 -98592039 - B1_Mur2 SINE Alu -29 120 1 8 762 400 283 178 0 chr11 23251981 23252133 -98591723 + B3A SINE B2 4 182 -16 8 762 601 252 86 24 chr11 23252187 23252386 -98591470 + B3A SINE B2 1 215 -1 8 762 294 286 29 0 chr11 23252380 23252450 -98591406 + B1F2 SINE Alu 1 72 -77 8 762 590 285 26 19 chr11 23252894 23253048 -98590808 + B3 SINE B2 5 159 -57 8 762 290 274 55 0 chr11 23253131 23253204 -98590652 + ID4_ SINE ID 7 83 0 8 762 486 299 122 20 chr11 23253351 23253498 -98590358 + B4A SINE B4 115 276 -16 8 762 234 0 0 0 chr11 23253509 23253535 -98590321 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 762 527 104 31 0 chr11 23253865 23253961 -98589895 + L1_Mus3 LINE L1 6539 6637 -1 8 762 321 310 51 17 chr11 23254186 23254304 -98589552 - B1F1 SINE Alu -1 148 27 8 762 27 0 0 0 chr11 23254312 23254339 -98589517 + AT_rich Low_complexity Low_complexity 1 27 0 8 762 1102 88 0 0 chr11 23255278 23255426 -98588430 + B1_Mus1 SINE Alu 1 148 0 8 762 613 271 45 19 chr11 23255461 23255615 -98588241 + B3A SINE B2 3 160 -38 8 762 354 80 0 0 chr11 23255636 23255686 -98588170 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 762 282 56 0 0 chr11 23255888 23255924 -98587932 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 762 580 244 51 1 chr11 23256023 23256183 -98587673 - B3A SINE B2 -8 187 3 8 762 240 181 97 0 chr11 23256473 23256545 -98587311 - L1MC LINE L1 -2412 5470 5392 8 762 270 56 0 0 chr11 23256773 23256809 -98587047 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 762 489 257 120 77 chr11 23256864 23257256 -98586600 - L1_Mur3 LINE L1 -3944 1936 1528 8 762 1474 48 0 26 chr11 23257281 23257473 -98586383 - B2_Mm1t SINE B2 -5 188 2 8 762 300 284 66 66 chr11 23257573 23257799 -98586057 - L1MEf LINE L1 -5153 1047 822 8 762 920 207 88 5 chr11 23258168 23258362 -98585494 - B3 SINE B2 -5 211 2 8 762 364 339 0 0 chr11 23258584 23258761 -98585095 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 8 762 636 320 21 50 chr11 23258863 23259103 -98584753 - B4A SINE B4 -49 243 11 8 762 350 230 76 42 chr11 23259032 23259150 -98584706 - B3A SINE B2 -75 123 2 8 762 569 229 0 0 chr11 23259362 23259458 -98584398 - RSINE1 SINE B4 -28 137 42 8 762 324 0 0 0 chr11 23259470 23259506 -98584350 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 762 455 250 96 55 chr11 23259514 23259713 -98584143 - RMER16 LTR ERVK -40 493 287 8 762 238 306 22 88 chr11 23259691 23259827 -98584029 - RMER16 LTR ERVK -157 376 250 8 762 268 306 34 88 chr11 23259892 23259916 -98583940 - MT2B LTR ERVL -288 313 175 8 762 660 187 32 0 chr11 23259916 23260039 -98583817 - B1_Mur1 SINE Alu -12 137 11 8 762 269 294 96 19 chr11 23259946 23260050 -98583806 - B4A SINE B4 -98 194 83 8 762 1575 31 21 5 chr11 23260063 23260255 -98583601 + B2_Mm2 SINE B2 1 195 0 8 762 213 39 0 0 chr11 23260335 23260361 -98583495 + (TCCCC)n Simple_repeat Simple_repeat 1 26 0 8 762 888 202 77 15 chr11 23260643 23260839 -98583017 - B3 SINE B2 -8 208 1 8 762 296 77 19 0 chr11 23260933 23260985 -98582871 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 8 762 26 64 0 0 chr11 23261499 23261546 -98582310 + AT_rich Low_complexity Low_complexity 1 47 0 8 762 183 275 0 0 chr11 23263216 23263256 -98580600 + L3 LINE CR1 50 89 -4400 8 762 320 236 16 127 chr11 23263372 23263498 -98580358 + MT2B LTR ERVL 153 264 -337 8 762 914 94 0 8 chr11 23263393 23263522 -98580334 + B1_Mus1 SINE Alu 10 137 -11 8 762 210 37 0 0 chr11 23263522 23263549 -98580307 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 8 762 501 315 60 0 chr11 23263559 23263708 -98580148 + RSINE1 SINE B4 3 160 -5 8 762 21 36 0 0 chr11 23263759 23263787 -98580069 + AT_rich Low_complexity Low_complexity 1 28 0 8 762 513 110 0 0 chr11 23263977 23264059 -98579797 + (GAA)n Simple_repeat Simple_repeat 2 83 0 8 762 537 58 0 0 chr11 23264438 23264507 -98579349 + (CCA)n Simple_repeat Simple_repeat 3 71 0 8 762 386 187 11 0 chr11 23265289 23265380 -98578476 + CT-rich Low_complexity Low_complexity 2 93 0 8 762 432 202 100 10 chr11 23265397 23265497 -98578359 - PB1D9 SINE Alu -9 111 3 8 762 598 230 42 23 chr11 23265804 23265981 -98577875 - B3 SINE B2 -1 194 12 8 762 381 346 36 81 chr11 23265995 23266218 -98577638 - MER20 DNA MER1_type -1 218 6 8 762 243 0 0 0 chr11 23266722 23266749 -98577107 + (T)n Simple_repeat Simple_repeat 1 27 0 8 762 1264 20 0 0 chr11 23266749 23266896 -98576960 - B1_Mus2 SINE Alu 0 147 1 8 762 519 308 20 27 chr11 23267035 23267185 -98576671 + B1_Mur2 SINE Alu 1 149 0 8 762 347 281 56 50 chr11 23267914 23268075 -98575781 + L1MB8 LINE L1 5890 6051 -127 8 762 603 251 191 62 chr11 23268963 23269141 -98574715 + B3 SINE B2 15 215 -1 8 762 784 239 27 21 chr11 23269292 23269480 -98574376 - B3 SINE B2 -1 215 27 8 762 258 297 135 52 chr11 23269528 23269624 -98574232 - PB1D9 SINE Alu -16 104 1 8 762 232 240 0 20 chr11 23269641 23269692 -98574164 + CT-rich Low_complexity Low_complexity 4 53 0 8 762 352 172 135 31 chr11 23269734 23269830 -98574026 - PB1D9 SINE Alu 0 120 15 8 762 225 178 0 0 chr11 23269908 23269953 -98573903 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 762 37 23 0 0 chr11 23269998 23270042 -98573814 + AT_rich Low_complexity Low_complexity 1 44 0 8 762 267 93 0 0 chr11 23270957 23271000 -98572856 + (T)n Simple_repeat Simple_repeat 1 43 0 8 762 461 222 33 0 chr11 23271147 23271237 -98572619 + PB1D7 SINE Alu 16 108 -12 8 762 277 375 15 0 chr11 23271273 23271409 -98572447 + LSU-rRNA_Hsa rRNA rRNA 4894 5031 -4 8 762 475 305 25 74 chr11 23271422 23271585 -98572271 + RSINE1 SINE B4 11 165 0 8 762 211 136 23 0 chr11 23271598 23271642 -98572214 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 8 762 1181 27 7 0 chr11 23271642 23271788 -98572068 - B1_Mus2 SINE Alu 0 147 1 8 762 22 35 0 0 chr11 23271791 23271820 -98572036 + AT_rich Low_complexity Low_complexity 1 29 0 8 762 325 269 13 13 chr11 23271900 23271979 -98571877 + RSINE1 SINE B4 3 81 -84 8 762 297 261 29 14 chr11 23272140 23272210 -98571646 + ID4_ SINE ID 3 73 -10 8 762 186 43 0 0 chr11 23272978 23273001 -98570855 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 8 762 222 261 28 119 chr11 23273025 23273134 -98570722 - PB1D9 SINE Alu 0 120 22 8 762 1400 39 16 37 chr11 23273459 23273616 -98570240 + B2_Mm1a SINE B2 1 160 -33 8 762 252 0 0 0 chr11 23273616 23273644 -98570212 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 8 762 1400 39 16 37 chr11 23273644 23273674 -98570182 + B2_Mm1a SINE B2 161 184 -9 8 762 509 274 132 16 chr11 23274237 23274426 -98569430 + B3 SINE B2 1 211 -5 8 762 687 203 162 11 chr11 23274472 23274651 -98569205 - B3 SINE B2 -9 207 2 8 762 439 254 93 23 chr11 23274668 23274797 -98569059 - B1F2 SINE Alu -10 139 2 8 762 330 206 123 0 chr11 23274821 23274894 -98568962 + B1_Mur3 SINE Alu 68 149 0 8 762 587 233 54 0 chr11 23275346 23275475 -98568381 + B1_Mur4 SINE Alu 6 141 -9 8 762 489 189 41 96 chr11 23275567 23275713 -98568143 - B3 SINE B2 -6 210 73 8 762 263 359 45 15 chr11 23275735 23275868 -98567988 - MIRb SINE MIR -76 192 56 9 762 817 45 9 9 chr11 23276042 23276155 -98567701 - B1_Mus1 SINE Alu -1 147 35 9 762 31 58 0 0 chr11 23276927 23276979 -98566877 + AT_rich Low_complexity Low_complexity 1 52 0 9 762 324 274 0 81 chr11 23277384 23277507 -98566349 + PB1D7 SINE Alu 5 117 -3 9 762 22 35 0 0 chr11 23277817 23277846 -98566010 + AT_rich Low_complexity Low_complexity 1 29 0 9 762 252 0 0 0 chr11 23278299 23278327 -98565529 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 762 205 239 14 27 chr11 23279187 23279260 -98564596 + CT-rich Low_complexity Low_complexity 2 73 0 9 762 351 0 0 0 chr11 23279309 23279348 -98564508 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 762 243 0 0 0 chr11 23279367 23279394 -98564462 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 762 438 101 0 0 chr11 23279451 23279520 -98564336 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 762 363 370 34 14 chr11 23279526 23279674 -98564182 - B3 SINE B2 -64 152 2 9 762 382 246 50 41 chr11 23279731 23279869 -98563987 - B1_Mm SINE Alu -3 146 14 9 762 306 228 25 25 chr11 23280475 23280556 -98563300 - ID4_ SINE ID 0 83 3 9 762 533 270 110 6 chr11 23280632 23280796 -98563060 - B3A SINE B2 -16 182 2 9 762 325 273 51 109 chr11 23281658 23281688 -98562168 - MT2B LTR ERVL -299 302 201 9 762 524 223 0 17 chr11 23281688 23281803 -98562053 - B1_Mur4 SINE Alu -43 106 1 9 762 325 273 51 109 chr11 23281803 23281814 -98562042 - MT2B LTR ERVL -299 200 156 9 762 1109 117 82 16 chr11 23282016 23282198 -98561658 + B2_Mm2 SINE B2 1 194 -1 9 762 387 369 80 7 chr11 23282987 23283137 -98560719 - RSINE1 SINE B4 -4 161 1 9 762 516 347 29 17 chr11 23283470 23283643 -98560213 + ID_B1 SINE B4 2 176 -48 9 762 831 216 87 0 chr11 23284595 23284780 -98559076 - B3 SINE B2 -13 203 3 9 762 424 241 35 7 chr11 23284784 23284888 -98558968 - PB1D10 SINE Alu -1 116 10 9 762 246 386 30 0 chr11 23284799 23284900 -98558956 - ID_B1 SINE B4 -42 182 79 9 762 284 208 40 0 chr11 23286851 23286952 -98556904 + CT-rich Low_complexity Low_complexity 1 105 0 9 762 356 331 6 88 chr11 23286972 23287131 -98556725 + MER20 DNA MER1_type 65 210 -9 9 762 809 157 269 6 chr11 23287400 23287567 -98556289 + B3 SINE B2 1 211 -5 9 762 778 282 8 6 chr11 23287593 23287786 -98556070 - B3 SINE B2 -5 211 18 9 762 195 42 0 0 chr11 23287895 23287919 -98555937 + (TATG)n Simple_repeat Simple_repeat 4 27 0 9 762 27 29 0 0 chr11 23287928 23287962 -98555894 + AT_rich Low_complexity Low_complexity 1 34 0 9 762 207 0 0 0 chr11 23288035 23288058 -98555798 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 762 1163 68 0 0 chr11 23288062 23288210 -98555646 - B1_Mus1 SINE Alu 0 148 1 9 762 329 263 9 66 chr11 23288953 23289059 -98554797 - B1F SINE Alu 0 149 50 9 762 394 362 40 94 chr11 23289067 23289418 -98554438 - MLT1A0 LTR MaLR -29 336 5 9 762 204 155 49 49 chr11 23289551 23289612 -98554244 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 9 762 471 331 78 0 chr11 23289612 23289754 -98554102 - RSINE1 SINE B4 -2 163 11 9 762 558 243 79 29 chr11 23290382 23290522 -98553334 - B1_Mur2 SINE Alu -1 148 2 9 762 23 0 0 0 chr11 23290526 23290549 -98553307 + AT_rich Low_complexity Low_complexity 1 23 0 9 762 360 343 7 55 chr11 23290559 23290704 -98553152 - RSINE1 SINE B4 0 165 28 9 762 215 300 167 0 chr11 23290830 23290890 -98552966 - B1F SINE Alu -78 71 2 9 762 276 278 14 0 chr11 23290974 23291046 -98552810 + tRNA-Ala-GCA tRNA tRNA 2 74 -1 9 762 298 312 0 0 chr11 23291224 23291301 -98552555 + ID SINE ID 1 77 -147 9 762 207 0 0 0 chr11 23291711 23291734 -98552122 + (TTA)n Simple_repeat Simple_repeat 3 25 0 9 762 346 307 57 7 chr11 23292059 23292200 -98551656 + B1_Mur1 SINE Alu 2 149 0 9 762 235 0 57 0 chr11 23292491 23292526 -98551330 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 9 762 3477 109 34 12 chr11 23293070 23293629 -98550227 - Lx LINE L1 0 6654 6084 9 762 524 154 10 0 chr11 23293645 23293749 -98550107 + CT-rich Low_complexity Low_complexity 2 106 0 9 762 553 157 215 0 chr11 23294081 23294202 -98549654 - B1_Mus1 SINE Alu 0 148 2 9 762 1092 68 7 20 chr11 23294558 23294708 -98549148 - B1_Mus1 SINE Alu 0 148 1 9 762 2454 57 19 77 chr11 23294736 23295099 -98548757 - ORR1A1 LTR MaLR -4 342 1 9 762 7084 119 42 2 chr11 23295188 23296879 -98546977 - L1_Mus4 LINE L1 0 6636 4865 9 762 260 309 42 21 chr11 23296912 23297008 -98546848 - PB1D10 SINE Alu -1 116 19 9 762 2183 186 148 7 chr11 23297734 23298434 -98545422 - Lx4A LINE L1 -9 7049 6251 9 762 603 233 13 52 chr11 23298530 23298684 -98545172 - B1_Mur3 SINE Alu 0 149 2 9 762 302 146 55 0 chr11 23299540 23299595 -98544261 - HAL1-3A_ME LINE L1 -823 2035 1978 9 762 470 276 69 50 chr11 23299611 23299771 -98544085 - RSINE1 SINE B4 -2 163 1 9 762 308 141 82 27 chr11 23300021 23300032 -98543824 - L1_Mus3 LINE L1 -15 6623 6614 9 762 840 48 0 0 chr11 23300032 23300137 -98543719 + (TCCCC)n Simple_repeat Simple_repeat 4 108 0 9 762 308 141 82 27 chr11 23300137 23300198 -98543658 - L1_Mus3 LINE L1 -25 6613 6547 9 762 404 221 0 44 chr11 23300218 23300308 -98543548 - ID_B1 SINE B4 -7 217 132 9 762 295 275 21 32 chr11 23300352 23300446 -98543410 - PB1D10 SINE Alu -13 104 12 9 762 665 183 40 34 chr11 23301070 23301245 -98542611 + B2_Mm2 SINE B2 1 176 -19 9 762 306 0 0 0 chr11 23301689 23301723 -98542133 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 762 388 347 67 8 chr11 23301723 23301842 -98542014 - B4A SINE B4 -157 135 10 9 762 1042 217 30 0 chr11 23301995 23302193 -98541663 - B3 SINE B2 -12 204 1 9 762 421 301 34 34 chr11 23302295 23302474 -98541382 + Kanga2_a DNA Tc2 171 349 -539 9 762 566 300 94 0 chr11 23302504 23302674 -98541182 - B3A SINE B2 -12 186 1 9 762 562 250 29 7 chr11 23302705 23302842 -98541014 - B1_Mur1 SINE Alu -8 141 2 9 762 1138 91 101 11 chr11 23302853 23303031 -98540825 - B2_Mm2 SINE B2 0 195 2 9 762 283 253 204 45 chr11 23303983 23304140 -98539716 - B3A SINE B2 -6 210 29 9 762 441 0 0 0 chr11 23304158 23304207 -98539649 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 762 906 291 108 0 chr11 23304761 23305002 -98538854 + MTEa LTR MaLR 1 267 -112 9 762 567 339 116 0 chr11 23305019 23305270 -98538586 - B4A SINE B4 0 292 13 9 762 239 184 100 50 chr11 23305556 23305636 -98538220 - YREP_Mm Unknown Unknown -1473 339 256 9 762 805 123 0 0 chr11 23305596 23305710 -98538146 + B1_Mus1 SINE Alu 23 136 -12 9 762 21 0 0 0 chr11 23305721 23305742 -98538114 + AT_rich Low_complexity Low_complexity 1 21 0 9 762 225 0 0 0 chr11 23306294 23306319 -98537537 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 762 625 206 48 0 chr11 23306322 23306448 -98537408 - B1_Mur4 SINE Alu -18 132 1 9 762 340 231 96 44 chr11 23306581 23306717 -98537139 - B1F1 SINE Alu -1 148 6 9 762 523 212 0 68 chr11 23306748 23306895 -98536961 + B1_Mus2 SINE Alu 2 138 -9 9 762 23 33 0 0 chr11 23307331 23307361 -98536495 + AT_rich Low_complexity Low_complexity 1 30 0 9 762 374 267 0 82 chr11 23307462 23307572 -98536284 - RSINE1 SINE B4 -63 102 2 9 762 297 0 0 0 chr11 23307711 23307744 -98536112 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 762 257 270 92 74 chr11 23307874 23307959 -98535897 - L1M4 LINE L1 -524 5654 5575 9 762 905 101 58 0 chr11 23307959 23308098 -98535758 - B1_Mus1 SINE Alu -1 147 1 9 762 257 270 92 74 chr11 23308098 23308296 -98535560 - L1M4 LINE L1 -604 5574 5366 9 762 309 53 0 0 chr11 23308296 23308334 -98535522 - ORR1A3 LTR MaLR -2 324 287 9 762 330 300 90 0 chr11 23308489 23308681 -98535175 - L1M4 LINE L1 -474 5705 5487 9 762 251 313 12 0 chr11 23308879 23308962 -98534894 - PB1D10 SINE Alu -2 115 32 9 762 623 297 71 0 chr11 23309021 23309176 -98534680 - ID_B1 SINE B4 -57 167 2 9 762 461 286 28 14 chr11 23309241 23309383 -98534473 - RSINE1 SINE B4 -17 148 5 9 762 322 331 78 22 chr11 23309860 23310039 -98533817 - L1M4 LINE L1 -1086 5060 4872 9 762 279 236 13 40 chr11 23310367 23310442 -98533414 + B1_Mur1 SINE Alu 77 149 0 9 762 269 259 83 36 chr11 23310524 23310608 -98533248 - RLTR25A LTR ERVK -494 609 522 9 762 587 238 9 0 chr11 23310546 23310651 -98533205 - B1_Mur1 SINE Alu -41 108 3 9 762 1210 61 0 0 chr11 23310815 23310963 -98532893 + B1_Mus1 SINE Alu 1 148 0 9 762 22 35 0 0 chr11 23310970 23310999 -98532857 + AT_rich Low_complexity Low_complexity 1 29 0 9 762 326 232 0 0 chr11 23311183 23311239 -98532617 - B1_Mur4 SINE Alu -93 57 2 9 762 193 178 22 22 chr11 23311460 23311506 -98532350 - L2 LINE L2 -1104 2315 2270 9 762 28 61 0 0 chr11 23311644 23311693 -98532163 + AT_rich Low_complexity Low_complexity 1 49 0 9 762 319 170 372 0 chr11 23311723 23311817 -98532039 + URR1B DNA MER1_type 97 225 0 9 762 610 84 0 0 chr11 23311955 23312050 -98531806 - L1_Mus3 LINE L1 -6 6632 6538 9 762 311 343 86 51 chr11 23312934 23313109 -98530747 + B3A SINE B2 2 182 -16 9 762 377 253 0 112 chr11 23313320 23313427 -98530429 + PB1D9 SINE Alu 2 96 -51 9 762 21 0 0 0 chr11 23313888 23313909 -98529947 + AT_rich Low_complexity Low_complexity 1 21 0 9 762 743 236 117 11 chr11 23313961 23314149 -98529707 - B3 SINE B2 -3 213 6 9 762 1161 41 14 0 chr11 23314292 23314437 -98529419 + B1_Mus2 SINE Alu 1 147 0 9 762 351 282 0 0 chr11 23314873 23314943 -98528913 + B1_Mus2 SINE Alu 1 70 -77 9 762 705 308 69 42 chr11 23314943 23315204 -98528652 + B4A SINE B4 1 268 -24 1 762 225 0 0 0 chr11 23315740 23315765 -98528091 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 762 1652 31 0 0 chr11 23315768 23315959 -98527897 - B2_Mm1t SINE B2 -1 192 2 1 762 21 0 0 0 chr11 23316047 23316068 -98527788 + AT_rich Low_complexity Low_complexity 1 21 0 1 762 388 326 14 7 chr11 23316168 23316310 -98527546 - B4A SINE B4 -141 151 9 1 762 242 312 44 18 chr11 23316475 23316589 -98527267 - PB1D10 SINE Alu 0 117 1 1 762 255 316 152 18 chr11 23316640 23317021 -98526835 - L1MC4 LINE L1 -564 7478 7047 1 762 206 217 0 32 chr11 23317040 23317083 -98526773 + T-rich Low_complexity Low_complexity 18 60 0 1 762 1156 82 0 0 chr11 23317083 23317230 -98526626 - B1_Mus2 SINE Alu 0 147 1 1 762 206 217 0 32 chr11 23317230 23317248 -98526608 + T-rich Low_complexity Low_complexity 1 17 0 1 762 23 0 0 0 chr11 23317531 23317554 -98526302 + AT_rich Low_complexity Low_complexity 1 23 0 1 762 261 293 53 0 chr11 23318261 23318336 -98525520 + ID4 SINE ID 2 80 -3 1 762 302 385 50 30 chr11 23318728 23318929 -98524927 - ID_B1 SINE B4 -16 208 4 1 762 1141 62 0 14 chr11 23319523 23319670 -98524186 + B1_Mus2 SINE Alu 2 146 -1 1 762 189 0 0 0 chr11 23321707 23321728 -98522128 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 762 692 147 0 9 chr11 23321728 23321838 -98522018 - B2_Mm2 SINE B2 -33 162 54 1 762 1149 54 7 0 chr11 23322056 23322203 -98521653 - B1_Mus1 SINE Alu 0 148 1 1 762 313 206 57 38 chr11 23322213 23322319 -98521537 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 1 762 215 174 0 21 chr11 23322552 23322599 -98521257 + T-rich Low_complexity Low_complexity 3 48 0 1 762 579 256 0 0 chr11 23322908 23323029 -98520827 - ID_B1 SINE B4 0 224 104 1 762 312 312 127 9 chr11 23323083 23323193 -98520663 - RSINE1 SINE B4 -22 143 21 1 762 452 229 22 96 chr11 23323277 23323412 -98520444 - ID_B1 SINE B4 -1 223 99 1 762 805 204 7 0 chr11 23323490 23323627 -98520229 + B1_Mur2 SINE Alu 12 149 0 1 762 1309 95 21 5 chr11 23323844 23324034 -98519822 - B2_Mm2 SINE B2 -2 193 1 1 762 237 282 118 0 chr11 23324366 23324451 -98519405 - MER68 LTR ERVL -11 552 458 1 762 294 296 136 82 chr11 23324521 23324668 -98519188 - MER68 LTR ERVL -349 214 60 1 762 787 186 14 7 chr11 23324954 23325095 -98518761 + B1_Mus1 SINE Alu 7 148 0 1 762 30 59 0 0 chr11 23326481 23326532 -98517324 + AT_rich Low_complexity Low_complexity 1 51 0 1 762 22 35 0 0 chr11 23326842 23326871 -98516985 + AT_rich Low_complexity Low_complexity 1 29 0 1 762 2842 182 93 9 chr11 23327067 23327637 -98516219 - Lx5 LINE L1 0 7050 6433 1 762 30 0 0 0 chr11 23327640 23327670 -98516186 + AT_rich Low_complexity Low_complexity 1 30 0 1 762 630 170 44 55 chr11 23327670 23327851 -98516005 - RMER17B LTR ERVK -495 463 285 1 762 508 160 191 8 chr11 23327855 23327981 -98515875 - B1_Mur4 SINE Alu -1 149 1 1 762 848 45 0 0 chr11 23328098 23328208 -98515648 + B1_Mus1 SINE Alu 1 110 -38 1 762 508 162 93 8 chr11 23328203 23328321 -98515535 - ORR1C1 LTR MaLR -250 128 1 1 762 515 325 66 33 chr11 23328361 23328635 -98515221 + B4A SINE B4 9 291 -1 1 762 1146 81 0 13 chr11 23328930 23329080 -98514776 - B1_Mus1 SINE Alu 0 148 1 1 762 2295 148 23 42 chr11 23329557 23329986 -98513870 - MTC LTR MaLR 0 421 1 1 762 1077 122 24 87 chr11 23330093 23330299 -98513557 + B2_Mm2 SINE B2 2 194 -1 1 762 912 189 80 0 chr11 23330304 23330479 -98513377 + B3 SINE B2 27 215 -1 1 762 21 36 0 0 chr11 23330494 23330522 -98513334 + AT_rich Low_complexity Low_complexity 1 28 0 1 762 244 295 12 49 chr11 23330546 23330628 -98513228 + B3A SINE B2 35 113 -85 1 95 450 278 124 26 chr11 23330719 23330952 -98512904 - Lx9 LINE L1 -3 7641 7386 1 763 328 223 298 10 chr11 23331553 23331657 -98512199 - B1_Mus2 SINE Alu -13 134 1 1 763 183 114 0 0 chr11 23331927 23331962 -98511894 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 763 489 62 0 0 chr11 23332738 23332803 -98511053 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 763 258 162 0 0 chr11 23334179 23334216 -98509640 + B3A SINE B2 82 118 -80 1 763 486 0 0 0 chr11 23334238 23334292 -98509564 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 763 482 278 17 34 chr11 23334326 23334445 -98509411 + B3A SINE B2 2 118 -80 1 763 446 219 67 0 chr11 23334446 23334551 -98509305 + PB1D9 SINE Alu 2 113 -7 1 763 265 289 125 0 chr11 23334579 23334683 -98509173 + B3 SINE B2 100 216 0 1 763 328 181 139 0 chr11 23334701 23334773 -98509083 + B1_Mur4 SINE Alu 69 150 0 1 763 207 0 0 0 chr11 23334966 23334989 -98508867 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 763 306 364 72 59 chr11 23335035 23335257 -98508599 + B4 SINE B4 68 292 0 1 763 492 302 126 42 chr11 23335281 23335495 -98508361 + B4A SINE B4 2 233 -59 1 763 257 354 83 15 chr11 23335486 23335618 -98508238 + RSINE1 SINE B4 25 165 0 1 763 909 251 41 0 chr11 23336191 23336386 -98507470 - B3 SINE B2 -8 208 6 1 763 807 125 8 38 chr11 23337412 23337545 -98506311 - B1_Mus2 SINE Alu 0 147 19 1 763 210 211 211 0 chr11 23337715 23337767 -98506089 - ID SINE ID -160 64 2 1 763 681 189 26 53 chr11 23338079 23338230 -98505626 + B1_Mus2 SINE Alu 1 147 0 1 763 265 95 44 67 chr11 23338323 23338413 -98505443 + T-rich Low_complexity Low_complexity 3 90 0 1 763 619 150 156 16 chr11 23338422 23338544 -98505312 - B1_Mur2 SINE Alu -9 140 2 1 763 1057 82 0 0 chr11 23338585 23338720 -98505136 - B1_Mus1 SINE Alu -13 135 1 1 763 1074 45 0 0 chr11 23339306 23339440 -98504416 - B2_Mm2 SINE B2 -60 135 2 1 763 1573 47 0 0 chr11 23339470 23339662 -98504194 - B2_Mm1t SINE B2 0 193 2 1 763 2940 37 0 0 chr11 23340295 23340645 -98503211 - L1Md_T LINE L1 -1 6581 6232 1 763 292 274 0 27 chr11 23340775 23340850 -98503006 - tRNA-Ala-GCA tRNA tRNA -2 73 1 1 763 256 24 0 47 chr11 23341361 23341404 -98502452 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 763 1164 49 0 0 chr11 23341407 23341549 -98502307 - B1_Mm SINE Alu -5 142 1 1 763 326 225 0 59 chr11 23341648 23341733 -98502123 + MT2B LTR ERVL 185 264 -337 1 763 775 41 0 0 chr11 23341657 23341755 -98502101 + B1_Mus1 SINE Alu 38 135 -13 1 763 225 250 16 16 chr11 23341959 23342020 -98501836 + ID4 SINE ID 5 65 -18 1 763 222 327 36 27 chr11 23342020 23342037 -98501819 + ID SINE ID 5 83 -141 1 763 284 225 250 0 chr11 23342037 23342117 -98501739 + B1_Mm SINE Alu 3 102 -45 1 763 1294 96 37 5 chr11 23342304 23342492 -98501364 - B2_Mm2 SINE B2 0 195 2 1 763 200 213 0 0 chr11 23343479 23343526 -98500330 + T-rich Low_complexity Low_complexity 1 47 0 1 763 1039 75 13 33 chr11 23343672 23343686 -98500170 - B1_Mus1 SINE Alu 0 148 139 1 763 228 35 0 0 chr11 23343686 23343715 -98500141 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 763 1039 75 13 33 chr11 23343715 23343851 -98500005 - B1_Mus1 SINE Alu -10 138 1 1 763 226 273 35 132 chr11 23343920 23343963 -98499893 - ID_B1 SINE B4 -115 109 7 1 763 282 279 42 42 chr11 23343963 23344034 -98499822 - ID4 SINE ID -6 77 7 1 763 24 0 0 0 chr11 23344239 23344263 -98499593 + AT_rich Low_complexity Low_complexity 1 24 0 1 763 189 147 0 0 chr11 23344636 23344670 -98499186 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 763 607 279 39 14 chr11 23345794 23346001 -98497855 + B3 SINE B2 1 212 -4 1 763 517 266 132 11 chr11 23346058 23346248 -98497608 - B3 SINE B2 -2 214 2 1 763 369 0 0 0 chr11 23347348 23347389 -98496467 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 763 330 115 0 0 chr11 23347518 23347570 -98496286 + (TCCCC)n Simple_repeat Simple_repeat 4 55 0 1 763 271 175 32 81 chr11 23347572 23347634 -98496222 - PB1D10 SINE Alu -58 59 1 1 763 267 276 27 125 chr11 23347634 23347682 -98496174 - B4A SINE B4 -149 141 43 1 763 361 284 0 0 chr11 23347709 23347783 -98496073 - PB1D7 SINE Alu -46 74 1 1 763 277 304 170 98 chr11 23347823 23347976 -98495880 + RSINE1 SINE B4 2 165 0 1 763 530 203 40 40 chr11 23347998 23348023 -98495833 - ID_B1 SINE B4 -1 223 121 1 763 876 43 0 0 chr11 23348023 23348138 -98495718 - B1_Mus1 SINE Alu -31 117 3 1 763 189 0 0 0 chr11 23348598 23348619 -98495237 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 1 763 440 244 8 56 chr11 23348624 23348750 -98495106 - B1_Mus1 SINE Alu -8 140 21 1 763 1276 123 0 5 chr11 23349670 23349858 -98493998 + B2_Mm2 SINE B2 2 188 -7 1 763 228 254 132 23 chr11 23350072 23350201 -98493655 - L1MB8 LINE L1 -201 5977 5835 1 763 361 330 45 9 chr11 23350205 23350315 -98493541 + PB1D7 SINE Alu 1 114 -6 1 763 327 290 110 80 chr11 23350374 23350439 -98493417 - L1MB8 LINE L1 -374 5804 5740 1 763 309 324 27 27 chr11 23350439 23350588 -98493268 - B1F1 SINE Alu 0 149 1 1 763 327 290 110 80 chr11 23350588 23350822 -98493034 - L1MB8 LINE L1 -439 5739 5496 1 763 235 316 39 13 chr11 23350932 23351009 -98492847 - ID4_ SINE ID -1 82 4 1 763 219 146 0 0 chr11 23351015 23351056 -98492800 + (T)n Simple_repeat Simple_repeat 1 41 0 1 763 1103 62 14 0 chr11 23351056 23351200 -98492656 - B1_Mus2 SINE Alu 0 147 2 1 763 598 212 0 69 chr11 23351291 23351675 -98492181 + (TACTG)n Simple_repeat Simple_repeat 1 357 0 1 763 264 214 20 52 chr11 23351718 23351871 -98491985 + (TACTG)n Simple_repeat Simple_repeat 5 152 0 1 763 227 114 23 0 chr11 23352403 23352447 -98491409 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 763 296 315 72 32 chr11 23353216 23353390 -98490466 - MIRb SINE MIR 0 268 90 1 763 258 329 40 0 chr11 23353532 23353608 -98490248 - PB1D10 SINE Alu -5 112 34 1 763 788 103 281 0 chr11 23353706 23353852 -98490004 + B2_Mm2 SINE B2 1 187 -8 1 763 2089 121 16 0 chr11 23353974 23354288 -98489568 - ORR1A2 LTR MaLR -8 319 1 1 763 219 139 0 0 chr11 23354544 23354580 -98489276 + (GAA)n Simple_repeat Simple_repeat 3 38 0 1 763 21 57 0 0 chr11 23354754 23354789 -98489067 + AT_rich Low_complexity Low_complexity 1 35 0 1 763 193 167 42 0 chr11 23355082 23355154 -98488702 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 1 763 2110 280 37 37 chr11 23355328 23355974 -98487882 - MER82 DNA MER2_type -1 652 7 1 763 832 274 119 50 chr11 23356560 23357324 -98486532 + L1MC5 LINE L1 6963 7779 -182 1 763 23 33 0 0 chr11 23357539 23357569 -98486287 + AT_rich Low_complexity Low_complexity 1 30 0 1 763 407 187 231 0 chr11 23358409 23358500 -98485356 + B1_Mur2 SINE Alu 27 138 -11 1 763 564 232 65 0 chr11 23358667 23358835 -98485021 + L1MA8 LINE L1 6032 6210 -81 1 763 423 0 0 0 chr11 23359277 23359324 -98484532 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 763 230 211 19 0 chr11 23359377 23359429 -98484427 - L1MC1 LINE L1 -40 6293 6241 1 763 669 226 80 50 chr11 23360250 23360450 -98483406 + B3 SINE B2 2 207 -9 1 763 495 0 0 0 chr11 23360873 23360928 -98482928 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 763 270 0 0 0 chr11 23360983 23361013 -98482843 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 763 231 267 0 0 chr11 23361137 23361182 -98482674 + B1_Mm SINE Alu 97 141 -6 1 763 527 0 0 16 chr11 23361314 23361378 -98482478 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 1 763 1164 43 0 0 chr11 23361378 23361516 -98482340 - B1_Mus1 SINE Alu -9 139 2 1 763 388 275 84 49 chr11 23361692 23361895 -98481961 + L1MC3 LINE L1 6687 6896 -889 1 763 1202 41 0 0 chr11 23362562 23362709 -98481147 + B1_Mm SINE Alu 1 147 0 1 763 584 241 29 14 chr11 23362769 23362908 -98480948 + B1_Mur1 SINE Alu 6 146 -3 1 763 374 122 141 22 chr11 23362907 23362999 -98480857 + B2_Mm2 SINE B2 74 176 -19 1 763 802 201 21 0 chr11 23363026 23363170 -98480686 + B1_Mus2 SINE Alu 1 147 0 1 763 21 36 0 0 chr11 23364102 23364130 -98479726 + AT_rich Low_complexity Low_complexity 1 28 0 1 763 273 236 14 0 chr11 23364977 23365049 -98478807 - ID4 SINE ID -10 73 1 1 763 515 238 232 0 chr11 23365085 23365253 -98478603 - B3 SINE B2 -9 207 1 1 763 296 277 53 11 chr11 23365388 23365483 -98478373 - BC1_Mm scRNA scRNA -46 106 8 1 763 294 50 0 0 chr11 23366105 23366145 -98477711 + (T)n Simple_repeat Simple_repeat 1 40 0 1 763 1143 75 0 0 chr11 23366145 23366291 -98477565 - B1_Mus2 SINE Alu 0 147 2 1 763 216 280 173 0 chr11 23366443 23366518 -98477338 + RSINE1 SINE B4 9 96 -69 1 763 261 75 0 0 chr11 23366520 23366560 -98477296 + (CAAG)n Simple_repeat Simple_repeat 2 41 0 1 763 22 0 0 0 chr11 23366588 23366610 -98477246 + AT_rich Low_complexity Low_complexity 1 22 0 1 763 387 306 77 57 chr11 23366762 23366956 -98476900 - RMER30 DNA MER1_type -1 201 4 1 763 22 0 0 0 chr11 23367384 23367406 -98476450 + AT_rich Low_complexity Low_complexity 1 22 0 1 763 470 272 105 25 chr11 23367431 23367593 -98476263 - ID_B1 SINE B4 0 224 50 1 763 217 315 67 11 chr11 23369424 23369514 -98474342 - L2a LINE L2 -23 3403 3309 1 763 533 272 56 12 chr11 23369623 23369783 -98474073 + B4A SINE B4 68 234 -58 1 763 271 242 0 0 chr11 23369783 23369849 -98474007 + (CAAG)n Simple_repeat Simple_repeat 1 66 0 1 763 518 310 7 40 chr11 23370958 23371106 -98472750 + RSINE1 SINE B4 5 147 -18 1 763 245 241 173 25 chr11 23371186 23371267 -98472589 + PB1D10 SINE Alu 13 105 -12 1 763 1175 47 0 13 chr11 23372131 23372281 -98471575 - B1_Mus1 SINE Alu 0 148 1 1 763 21 0 0 0 chr11 23373800 23373821 -98470035 + AT_rich Low_complexity Low_complexity 1 21 0 1 763 22 0 0 0 chr11 23373910 23373932 -98469924 + AT_rich Low_complexity Low_complexity 1 22 0 1 763 204 143 0 0 chr11 23374476 23374518 -98469338 + (T)n Simple_repeat Simple_repeat 1 42 0 1 763 180 0 0 0 chr11 23374711 23374731 -98469125 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 763 298 233 17 0 chr11 23375110 23375170 -98468686 - L1ME3A LINE L1 -110 6063 6003 1 763 357 282 8 68 chr11 23375756 23375874 -98467982 + B1F1 SINE Alu 18 128 -21 1 763 1208 34 0 0 chr11 23376535 23376681 -98467175 + B1_Mm SINE Alu 2 147 0 1 763 183 42 0 0 chr11 23376681 23376705 -98467151 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 763 235 300 58 29 chr11 23376772 23376875 -98466981 + PB1D10 SINE Alu 9 114 -3 1 763 373 274 20 40 chr11 23377068 23377167 -98466689 + ID_B1 SINE B4 116 212 -12 1 763 1411 44 50 0 chr11 23377289 23377469 -98466387 + B2_Mm2 SINE B2 2 190 -5 1 763 326 180 33 0 chr11 23377564 23377625 -98466231 + PB1D9 SINE Alu 58 120 0 1 763 815 135 51 29 chr11 23378264 23378401 -98465455 + B1_Mur2 SINE Alu 2 141 -8 1 763 504 234 102 0 chr11 23378520 23378648 -98465208 - B1_Mur3 SINE Alu -8 141 1 1 763 2368 218 69 37 chr11 23378802 23379357 -98464499 - Lx2B LINE L1 -24 6976 6392 1 763 1426 64 5 15 chr11 23379357 23379562 -98464294 - L1Md_F2 LINE L1 -1 6581 6379 1 763 800 67 19 0 chr11 23379562 23379667 -98464189 - U6 snRNA snRNA 0 107 1 1 763 2368 218 69 37 chr11 23379667 23379702 -98464154 - Lx2B LINE L1 -609 6391 6367 1 763 1105 109 55 0 chr11 23379802 23379985 -98463871 + B2_Mm1t SINE B2 1 193 0 1 763 545 259 37 0 chr11 23380024 23380159 -98463697 - B1_Mm SINE Alu -7 140 1 1 763 707 284 25 5 chr11 23380225 23380423 -98463433 - B3 SINE B2 -14 202 1 1 763 555 271 6 94 chr11 23381191 23381350 -98462506 + B3A SINE B2 1 145 -53 1 763 260 342 25 34 chr11 23381930 23382048 -98461808 + PB1D10 SINE Alu 1 117 0 1 763 309 324 22 17 chr11 23382529 23382646 -98461210 + PB1D10 SINE Alu 3 122 -27 1 763 270 316 62 12 chr11 23382650 23382730 -98461126 - MER58D DNA MER1_type -301 85 2 1 763 400 326 121 9 chr11 23383010 23383242 -98460614 + MER58B DNA MER1_type 68 325 -16 1 763 369 260 57 48 chr11 23384479 23384584 -98459272 + PB1D10 SINE Alu 1 106 -11 1 763 392 106 0 29 chr11 23384835 23384903 -98458953 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1 763 1165 55 0 14 chr11 23384907 23385055 -98458801 - B1_Mus1 SINE Alu 0 148 3 1 763 365 309 100 7 chr11 23385200 23385217 -98458639 - B4A SINE B4 -54 238 141 1 763 392 216 181 0 chr11 23385217 23385333 -98458523 - B1F1 SINE Alu -6 143 7 1 763 583 250 104 50 chr11 23385441 23385643 -98458213 - B3 SINE B2 -3 213 1 1 763 2752 21 18 6 chr11 23385846 23386181 -98457675 + L1Md_F3 LINE L1 6246 6584 0 1 763 885 222 45 20 chr11 23386497 23386699 -98457157 + B3 SINE B2 2 208 -8 1 763 447 280 61 27 chr11 23387434 23387452 -98456404 + ID_B1 SINE B4 73 224 0 1 763 555 227 85 8 chr11 23387452 23387581 -98456275 + B1F2 SINE Alu 11 149 0 1 763 924 175 12 0 chr11 23392783 23392943 -98450913 - L2a LINE L2 0 3426 3265 1 763 473 219 105 0 chr11 23392976 23393081 -98450775 - PB1D10 SINE Alu -1 116 1 1 763 565 248 209 4 chr11 23393641 23393904 -98449952 + MER33 DNA MER1_type 8 324 0 1 763 1207 28 0 7 chr11 23394072 23394214 -98449642 - B1_Mus2 SINE Alu -6 141 1 1 763 261 288 0 0 chr11 23395616 23395675 -98448181 - ID4_ SINE ID -23 60 2 1 763 272 186 183 19 chr11 23395998 23396102 -98447754 + L1M4 LINE L1 5735 5855 -319 1 763 287 309 14 14 chr11 23396184 23396253 -98447603 + RSINE1 SINE B4 3 71 -94 1 763 253 232 0 66 chr11 23397955 23398061 -98445795 + (CCCCG)n Simple_repeat Simple_repeat 1 99 0 1 763 1185 68 0 0 chr11 23399681 23399827 -98444029 - B1_Mus2 SINE Alu 0 147 2 1 763 398 245 9 67 chr11 23399856 23399961 -98443895 - RSINE1 SINE B4 -2 163 65 1 763 348 158 61 32 chr11 23400041 23400135 -98443721 + RMER19B LTR ERVK 359 423 -479 1 763 204 150 0 24 chr11 23400287 23400328 -98443528 + CT-rich Low_complexity Low_complexity 1 40 0 1 763 222 197 29 29 chr11 23400519 23400587 -98443269 + (CTCA)n Simple_repeat Simple_repeat 3 70 0 1 763 1293 27 0 0 chr11 23401278 23401425 -98442431 - B1_Mm SINE Alu 0 147 1 1 763 1531 191 92 27 chr11 23401710 23402038 -98441818 + RMER19C LTR ERVK 257 605 -6 1 763 1684 16 5 10 chr11 23402038 23402232 -98441624 + B2_Mm1a SINE B2 1 193 0 1 763 249 33 0 0 chr11 23402232 23402262 -98441594 + (A)n Simple_repeat Simple_repeat 1 30 0 1 763 804 206 130 5 chr11 23402436 23402621 -98441235 + B3 SINE B2 1 208 -8 1 763 1643 27 0 0 chr11 23402621 23402807 -98441049 - B2_Mm1a SINE B2 -7 186 1 1 763 408 288 76 8 chr11 23402845 23402964 -98440892 - RSINE1 SINE B4 -30 135 9 1 763 829 163 258 6 chr11 23403026 23403193 -98440663 - B3 SINE B2 -6 210 2 1 763 427 290 4 24 chr11 23403498 23403623 -98440233 + PB1D10 SINE Alu 14 129 -21 1 763 777 133 14 88 chr11 23403623 23403771 -98440085 + B1_Mur4 SINE Alu 3 139 -11 1 763 304 298 27 103 chr11 23403771 23403791 -98440065 + B1_Mur4 SINE Alu 130 149 -1 1 763 493 146 522 7 chr11 23403804 23403942 -98439914 + B3 SINE B2 2 210 -6 1 763 1327 110 21 0 chr11 23403955 23404146 -98439710 + B2_Mm2 SINE B2 1 195 0 1 763 522 203 108 7 chr11 23404589 23404728 -98439128 - B3 SINE B2 0 216 64 1 763 2803 53 70 18 chr11 23404729 23404897 -98438959 - BGLII LTR ERVK 0 421 257 1 763 1934 197 55 32 chr11 23404897 23405333 -98438523 + RLTR41 LTR ERV1 1 446 0 1 763 2803 53 70 18 chr11 23405333 23405564 -98438292 - BGLII LTR ERVK -165 256 1 1 763 380 127 0 0 chr11 23405570 23405625 -98438231 - B2_Mm2 SINE B2 -140 55 1 1 763 1253 88 43 32 chr11 23405630 23405800 -98438056 - B2_Mm2 SINE B2 -6 189 17 1 763 3790 98 18 95 chr11 23405800 23406411 -98437445 + LTRIS2 LTR ERV1 1 564 0 1 763 1253 88 43 32 chr11 23406411 23406427 -98437429 - B2_Mm2 SINE B2 -179 16 1 1 763 859 156 158 21 chr11 23406611 23406801 -98437055 + B3 SINE B2 1 216 0 1 763 552 266 150 22 chr11 23406924 23407151 -98436705 + B4A SINE B4 24 279 -13 1 763 423 301 149 22 chr11 23407258 23407486 -98436370 + MLT1F2 LTR MaLR 1 257 -303 1 763 1211 75 0 0 chr11 23407487 23407634 -98436222 + B1_Mus2 SINE Alu 1 147 0 1 763 222 100 0 0 chr11 23407634 23407662 -98436194 + (A)n Simple_repeat Simple_repeat 1 28 0 1 763 183 42 0 0 chr11 23407662 23407686 -98436170 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1 763 222 100 0 0 chr11 23407686 23407697 -98436159 + (A)n Simple_repeat Simple_repeat 1 11 0 1 763 230 285 47 74 chr11 23407710 23407858 -98435998 + RLTR25B LTR ERVK 355 498 -530 1 763 666 169 0 17 chr11 23407789 23407909 -98435947 + B1_Mur4 SINE Alu 33 150 0 1 763 1475 166 74 92 chr11 23408185 23408576 -98435280 + ORR1C2 LTR MaLR 1 384 0 1 763 2299 147 45 47 chr11 23408601 23408998 -98434858 + MTC LTR MaLR 1 402 -19 1 763 5737 100 74 20 chr11 23408998 23409904 -98433952 - RMER17B LTR ERVK 0 958 4 1 763 2299 147 45 47 chr11 23409904 23409928 -98433928 + MTC LTR MaLR 403 421 0 1 763 3078 171 37 45 chr11 23409928 23410570 -98433286 + MTC-int LTR MaLR 36 696 -402 1 763 430 147 53 0 chr11 23410565 23410640 -98433216 + MTC LTR MaLR 335 413 -8 1 763 255 31 0 0 chr11 23410851 23410883 -98432973 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 763 385 143 27 41 chr11 23410883 23410956 -98432900 - PB1D9 SINE Alu -9 111 40 1 763 313 207 35 0 chr11 23411026 23411084 -98432772 - B1_Mus1 SINE Alu -88 60 1 1 763 1003 176 169 11 chr11 23411375 23411649 -98432207 + ORR1D1 LTR MaLR 40 338 -36 1 763 2916 226 87 75 chr11 23411649 23412545 -98431311 + RMER13B LTR ERVK 1 908 0 1 763 303 85 0 41 chr11 23412545 23412587 -98431269 + ORR1D1 LTR MaLR 331 370 0 1 763 451 230 28 65 chr11 23412587 23412694 -98431162 - B1_Mur1 SINE Alu -15 134 32 1 763 3046 32 0 0 chr11 23412731 23413077 -98430779 + ORR1A1 LTR MaLR 1 346 0 1 763 400 265 105 29 chr11 23413091 23413196 -98430660 - PB1D10 SINE Alu 0 117 5 1 763 1227 61 0 0 chr11 23413500 23413647 -98430209 + B1_Mus1 SINE Alu 1 147 -1 1 763 273 272 188 17 chr11 23414119 23414295 -98429561 + L1MB3 LINE L1 5695 5900 -283 1 763 2660 102 86 15 chr11 23414519 23414530 -98429326 + RLTR9B LTR ERVK 1 11 -426 1 763 3528 20 10 0 chr11 23414530 23414922 -98428934 + MTA_Mm LTR MaLR 1 396 0 1 763 2660 102 86 15 chr11 23414922 23415318 -98428538 + RLTR9B LTR ERVK 12 437 0 1 763 231 36 0 0 chr11 23415971 23415999 -98427857 + (T)n Simple_repeat Simple_repeat 1 28 0 1 763 1241 41 0 0 chr11 23415999 23416145 -98427711 - B1_Mm SINE Alu 0 147 2 1 763 198 0 0 0 chr11 23417398 23417420 -98426436 + (T)n Simple_repeat Simple_repeat 1 22 0 1 763 504 204 8 19 chr11 23417489 23417760 -98426096 + (TG)n Simple_repeat Simple_repeat 1 267 0 1 763 343 291 53 35 chr11 23417910 23418024 -98425832 - B4A SINE B4 -153 139 24 1 763 1325 56 0 0 chr11 23418241 23418401 -98425455 + B2_Mm1t SINE B2 1 160 -33 1 763 820 0 20 0 chr11 23418401 23418501 -98425355 + (TAAA)n Simple_repeat Simple_repeat 3 104 0 1 763 619 215 33 0 chr11 23418552 23418673 -98425183 - ID_B1 SINE B4 -8 216 92 1 763 23 33 0 0 chr11 23418701 23418731 -98425125 + AT_rich Low_complexity Low_complexity 1 30 0 1 763 266 129 314 88 chr11 23419765 23419867 -98423989 + PB1 SINE Alu 3 127 0 1 763 435 301 81 65 chr11 23419919 23420250 -98423606 - MLT1A1 LTR MaLR -3 405 3 1 763 2373 112 23 63 chr11 23420732 23421131 -98422725 - RLTR9A2 LTR ERVK 0 383 1 1 763 2817 85 45 0 chr11 23421216 23421616 -98422240 + BGLII LTR ERVK 4 421 0 1 763 556 197 108 43 chr11 23421989 23422175 -98421681 + RMER3D-int LTR ERVK 652 849 -1993 1 763 493 80 12 74 chr11 23422264 23422294 -98421562 + RMER3D-int LTR ERVK 489 514 -2328 1 763 3207 65 2 2 chr11 23422294 23422694 -98421162 - MTB LTR MaLR 0 400 1 1 763 493 85 18 60 chr11 23422694 23422756 -98421100 + RMER3D-int LTR ERVK 515 564 -2278 1 763 4110 33 2 8 chr11 23422756 23423244 -98420612 + L1Md_F2 LINE L1 6096 6580 -2 1 763 437 107 40 0 chr11 23423244 23423271 -98420585 + RMER3D-int LTR ERVK 1056 1084 -6322 1 763 808 96 30 73 chr11 23423290 23423663 -98420193 + GA-rich Low_complexity Low_complexity 1 356 0 1 763 2691 176 102 62 chr11 23423689 23424348 -98419508 + RMER3D-int LTR ERVK 470 1679 -1163 1 763 3477 185 118 14 chr11 23424366 23425002 -98418854 + MYSERV16_I-int LTR ERVK 1304 2009 -317 1 763 3012 86 39 55 chr11 23425002 23425492 -98418364 + RLTR45 LTR ERVK 1 482 0 1 763 3477 185 118 14 chr11 23425492 23425780 -98418076 + MYSERV16_I-int LTR ERVK 2010 2324 -2 1 763 3001 82 9 5 chr11 23425782 23426201 -98417655 + BGLII LTR ERVK 1 421 0 1 763 226 216 125 0 chr11 23427001 23427065 -98416791 - B3 SINE B2 -95 121 51 1 763 3650 292 31 59 chr11 23427118 23427815 -98416041 + MuRRS4-int LTR ERV1 1633 2319 -5237 1 763 1249 40 0 0 chr11 23427815 23427963 -98415893 + B1_Mus1 SINE Alu 1 148 0 1 763 3650 292 31 59 chr11 23427963 23428760 -98415096 + MuRRS4-int LTR ERV1 2320 3086 -4470 1 763 497 270 0 8 chr11 23428752 23428879 -98414977 + MuRRS4-int LTR ERV1 3216 3341 -4215 1 763 6495 270 21 28 chr11 23428862 23430469 -98413387 + MuRRS4-int LTR ERV1 2621 5333 -2445 1 763 1522 48 27 0 chr11 23430469 23430657 -98413199 + B2_Mm1t SINE B2 1 193 0 1 763 6495 269 21 26 chr11 23430657 23431088 -98412768 + MuRRS4-int LTR ERV1 3966 4360 -703 1 763 2698 286 40 48 chr11 23431577 23432917 -98410939 + MuRRS4-int LTR ERV1 6139 7764 -14 1 763 3458 72 2 11 chr11 23432917 23432942 -98410914 + LTRIS5 LTR ERV1 2 24 -423 1 763 225 0 0 0 chr11 23432942 23432967 -98410889 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 763 3458 72 2 11 chr11 23432967 23433391 -98410465 + LTRIS5 LTR ERV1 25 447 0 1 763 22 0 0 0 chr11 23433532 23433554 -98410302 + AT_rich Low_complexity Low_complexity 1 22 0 1 763 456 235 152 44 chr11 23433623 23433875 -98409981 + MTD LTR MaLR 5 358 -61 1 763 291 203 57 31 chr11 23434205 23434292 -98409564 + ID4 SINE ID 15 102 -50 1 763 233 254 134 0 chr11 23434460 23434527 -98409329 + PB1D10 SINE Alu 1 76 -41 1 763 800 280 52 24 chr11 23435100 23435349 -98408507 + ORR1E LTR MaLR 15 270 -89 1 763 740 258 5 63 chr11 23435785 23435992 -98407864 - B3A SINE B2 -3 195 1 1 763 628 137 141 31 chr11 23436056 23436096 -98407760 + RMER6B LTR ERVK 320 359 -102 1 763 369 0 0 0 chr11 23436096 23436137 -98407719 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 763 628 137 141 31 chr11 23436137 23436224 -98407632 + RMER6B LTR ERVK 360 459 -2 1 763 1531 146 48 13 chr11 23436224 23436462 -98407394 + ORR1B2 LTR MaLR 106 361 -13 1 763 3088 162 16 21 chr11 23436466 23437028 -98406828 + ORR1B2-int LTR MaLR 2 560 -949 1 763 12505 150 34 7 chr11 23437028 23439002 -98404854 + MERVL_2A-int LTR ERVL 1901 3927 -1834 1 763 382 275 217 17 chr11 23439006 23439246 -98404610 + Arthur1 DNA Tip100 3657 3944 -3 1 763 2272 142 28 44 chr11 23439424 23439813 -98404043 - Lx4A LINE L1 0 7058 6676 1 763 5382 99 45 3 chr11 23439813 23440723 -98403133 - Lx4A LINE L1 -611 6447 5482 1 763 307 318 78 96 chr11 23442545 23442730 -98401126 + MLT1E1 LTR MaLR 427 617 -37 1 763 198 0 0 0 chr11 23442941 23442963 -98400893 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 763 2606 152 2 24 chr11 23443453 23443876 -98399980 + MTC LTR MaLR 3 416 -5 1 763 263 307 117 8 chr11 23444587 23444715 -98399141 + L1MEg LINE L1 476 617 -5467 1 763 1886 140 0 24 chr11 23444735 23445064 -98398792 - ORR1A4 LTR MaLR -8 321 1 1 763 252 0 0 0 chr11 23445114 23445142 -98398714 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 763 423 38 0 0 chr11 23445142 23445194 -98398662 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 763 345 271 14 79 chr11 23445195 23445335 -98398521 - RSINE1 SINE B4 -23 142 12 1 763 310 213 203 14 chr11 23445353 23445491 -98398365 + L1MEg LINE L1 701 864 -5220 1 763 1273 151 37 16 chr11 23445492 23445734 -98398122 + ORR1C1 LTR MaLR 132 378 0 1 763 2573 204 52 28 chr11 23445735 23446401 -98397455 + ORR1C1-int LTR MaLR 2 692 -678 1 763 4427 20 2 0 chr11 23446401 23446893 -98396963 - MT2_Mm LTR ERVL 0 493 1 1 763 362 167 46 35 chr11 23446931 23447018 -98396838 - ORR1A3-int LTR MaLR -1323 640 553 1 763 48613 13 6 0 chr11 23447018 23452344 -98391512 - MERVL-int LTR ERVL -125 5360 1 1 763 4427 20 2 0 chr11 23452344 23452836 -98391020 - MT2_Mm LTR ERVL 0 493 1 1 763 3350 148 56 18 chr11 23452836 23453312 -98390544 + ORR1C1-int LTR MaLR 819 1322 -187 1 763 2878 168 17 15 chr11 23453312 23453839 -98390017 + RLTR11A LTR ERVK 1 528 0 1 763 3350 148 56 18 chr11 23453839 23454028 -98389828 + ORR1C1-int LTR MaLR 1323 1509 0 1 763 1933 146 41 72 chr11 23454028 23454163 -98389693 + ORR1C1 LTR MaLR 1 138 -240 1 763 225 0 0 0 chr11 23454163 23454188 -98389668 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 1 763 612 0 0 0 chr11 23454191 23454259 -98389597 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 763 1247 21 0 0 chr11 23454260 23454400 -98389456 - B1_Mm SINE Alu -7 140 1 1 763 1933 146 41 72 chr11 23454400 23454430 -98389426 + ORR1C1 LTR MaLR 139 152 -226 1 763 5227 74 27 0 chr11 23454430 23455133 -98388723 - L1_Mus2 LINE L1 -1 6565 5844 1 763 1933 146 41 72 chr11 23455133 23455350 -98388506 + ORR1C1 LTR MaLR 153 378 0 1 763 607 108 18 0 chr11 23455397 23455508 -98388348 + (GA)n Simple_repeat Simple_repeat 1 113 0 1 763 422 273 31 47 chr11 23455509 23455636 -98388220 + ID_B1 SINE B4 92 216 -8 1 763 219 262 0 0 chr11 23455657 23455699 -98388157 + B1F2 SINE Alu 1 42 -107 1 763 453 178 21 58 chr11 23455808 23455915 -98387941 + RMER17C LTR ERVK 91 188 -222 1 763 1017 119 6 17 chr11 23455915 23456095 -98387761 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 1 763 453 178 21 58 chr11 23456095 23456178 -98387678 + RMER17C LTR ERVK 189 274 -136 1 763 691 138 141 28 chr11 23456331 23456473 -98387383 - B2_Mm2 SINE B2 -34 161 4 1 763 532 244 8 25 chr11 23456491 23456609 -98387247 - PB1D10 SINE Alu -1 116 1 1 763 6263 152 85 43 chr11 23456780 23458033 -98385823 - Lx5 LINE L1 0 7050 5745 1 763 462 36 0 0 chr11 23458033 23458089 -98385767 + (TTTTC)n Simple_repeat Simple_repeat 4 59 0 1 763 6906 130 41 9 chr11 23458814 23459946 -98383910 - L1_Mur2 LINE L1 -131 5746 4579 1 763 1010 48 0 197 chr11 23459969 23460152 -98383704 + B1_Mus1 SINE Alu 2 148 0 1 763 282 155 17 0 chr11 23460221 23460279 -98383577 - L1M4 LINE L1 -1110 5036 4978 1 763 572 290 74 14 chr11 23460400 23460617 -98383239 - L1M4 LINE L1 -1154 4992 4763 1 763 231 300 45 18 chr11 23460952 23461064 -98382792 + L1MC4 LINE L1 6471 6585 -1297 1 763 362 285 149 11 chr11 23461213 23461387 -98382469 + L1MC4 LINE L1 6808 7005 -1037 1 763 941 173 201 0 chr11 23461397 23461576 -98382280 + B3 SINE B2 2 216 0 1 95 252 367 48 39 chr11 23461697 23461904 -98381952 - MLT1L LTR MaLR -353 257 49 1 764 1233 107 6 17 chr11 23462078 23462259 -98381597 - B2_Mm2 SINE B2 -14 181 3 1 764 871 220 53 11 chr11 23462528 23462716 -98381140 + B3 SINE B2 2 197 -19 1 764 258 325 98 79 chr11 23462845 23463009 -98380847 - B4A SINE B4 -72 220 54 1 764 1305 123 11 0 chr11 23464495 23464682 -98379174 + B2_Mm1t SINE B2 1 189 -4 1 764 351 263 114 0 chr11 23464742 23464856 -98379000 - B1F SINE Alu -16 133 7 1 764 31 26 0 0 chr11 23464957 23464995 -98378861 + AT_rich Low_complexity Low_complexity 1 38 0 1 764 660 225 14 0 chr11 23464999 23465137 -98378719 - RSINE1 SINE B4 -22 143 4 1 764 735 118 86 36 chr11 23465244 23465384 -98378472 - B1_Mur4 SINE Alu 0 150 4 1 764 1163 75 0 0 chr11 23465702 23465848 -98378008 - B1_Mus2 SINE Alu 0 147 2 1 764 566 250 23 52 chr11 23465875 23466048 -98377808 + B3A SINE B2 24 191 -7 1 764 656 255 7 0 chr11 23466450 23466595 -98377261 + B1_Mus2 SINE Alu 2 147 0 1 764 327 205 171 2 chr11 23467061 23467165 -98376691 - B1F1 SINE Alu 0 117 1 1 764 834 118 15 7 chr11 23467373 23467509 -98376347 + B1_Mur3 SINE Alu 13 149 0 1 764 547 259 67 0 chr11 23468099 23468234 -98375622 + B1F SINE Alu 6 149 0 1 764 243 0 0 0 chr11 23469481 23469508 -98374348 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 764 183 250 0 19 chr11 23469953 23470006 -98373850 - MIR SINE MIR -14 248 197 1 764 760 288 97 5 chr11 23470588 23470804 -98373052 - B4 SINE B4 -55 237 2 1 764 412 284 0 0 chr11 23470979 23471127 -98372729 + (TG)n Simple_repeat Simple_repeat 1 148 0 1 764 198 194 0 0 chr11 23471151 23471223 -98372633 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 764 284 281 20 30 chr11 23471240 23471339 -98372517 + B4A SINE B4 148 245 -47 1 764 832 266 88 24 chr11 23472434 23472773 -98371083 - MER31A LTR ERV1 0 485 125 1 764 564 89 0 0 chr11 23472824 23472903 -98370953 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 764 245 288 0 43 chr11 23473424 23473493 -98370363 - ID4 SINE ID -6 77 12 1 764 251 196 20 0 chr11 23474635 23474686 -98369170 + MLT1G1 LTR MaLR 246 297 -282 1 764 21 36 0 0 chr11 23475236 23475264 -98368592 + AT_rich Low_complexity Low_complexity 1 28 0 1 764 21 0 0 0 chr11 23475682 23475703 -98368153 + AT_rich Low_complexity Low_complexity 1 21 0 1 764 839 258 45 5 chr11 23477400 23477599 -98366257 - ID_B1 SINE B4 -17 207 1 1 764 412 75 0 0 chr11 23477759 23477812 -98366044 - Lx4A LINE L1 -1389 5669 5617 1 764 808 137 65 0 chr11 23477814 23477953 -98365903 + Lx5 LINE L1 6182 6329 -721 1 764 3284 183 25 10 chr11 23477953 23478543 -98365313 + Lx5 LINE L1 6449 7047 -3 1 764 227 240 0 0 chr11 23478569 23478619 -98365237 - PB1D7 SINE Alu -56 64 15 1 764 873 217 44 10 chr11 23479040 23479245 -98364611 - B3 SINE B2 -1 215 4 1 764 886 158 7 0 chr11 23479259 23479398 -98364458 - B1_Mur1 SINE Alu -9 140 1 1 764 284 229 86 0 chr11 23479898 23479968 -98363888 - ID SINE ID -141 83 8 1 764 3229 43 13 5 chr11 23480235 23480628 -98363228 + MTA_Mm LTR MaLR 1 396 0 1 764 1273 59 59 0 chr11 23480885 23481054 -98362802 + B2_Mm1t SINE B2 1 179 -14 1 764 417 86 269 7 chr11 23481081 23481196 -98362660 + B2_Mm2 SINE B2 46 195 0 1 764 1333 152 189 48 chr11 23481189 23481501 -98362355 + ORR1B2 LTR MaLR 12 367 0 1 764 299 73 41 14 chr11 23481742 23481801 -98362055 + B1_Mm SINE Alu 89 145 -2 1 764 240 35 0 0 chr11 23481803 23481832 -98362024 + (A)n Simple_repeat Simple_repeat 1 29 0 1 764 232 227 91 0 chr11 23482363 23482429 -98361427 + MLT1A1 LTR MaLR 337 408 0 1 764 636 259 16 65 chr11 23482636 23482822 -98361034 + B3A SINE B2 1 177 -21 1 764 474 157 55 86 chr11 23483277 23483398 -98360458 + B1_Mur1 SINE Alu 1 132 -17 1 764 246 62 0 0 chr11 23483398 23483430 -98360426 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1 764 474 156 29 86 chr11 23483430 23483447 -98360409 + B1_Mur1 SINE Alu 133 144 -5 1 764 30 59 0 0 chr11 23483559 23483610 -98360246 + AT_rich Low_complexity Low_complexity 1 51 0 1 764 22 0 0 0 chr11 23483652 23483674 -98360182 + AT_rich Low_complexity Low_complexity 1 22 0 1 764 655 166 226 33 chr11 23483781 23483962 -98359894 - B3 SINE B2 0 216 1 1 764 438 262 44 82 chr11 23485937 23486120 -98357736 + MTEa LTR MaLR 1 176 -203 1 764 248 298 83 0 chr11 23486407 23486491 -98357365 + PB1D7 SINE Alu 5 95 -25 1 764 411 264 63 16 chr11 23486548 23486675 -98357181 + ID_B1 SINE B4 89 221 -3 1 764 286 246 0 0 chr11 23486827 23486884 -98356972 + B1F2 SINE Alu 1 57 -92 1 764 321 206 0 0 chr11 23486885 23486977 -98356879 + GA-rich Low_complexity Low_complexity 2 93 0 1 764 260 187 80 0 chr11 23486980 23487055 -98356801 + PB1D7 SINE Alu 40 120 0 1 764 375 283 216 8 chr11 23487312 23487696 -98356160 + L1M5 LINE L1 3108 3571 -2575 1 764 311 246 101 29 chr11 23487982 23488191 -98355665 + L1M5 LINE L1 3828 4049 -2097 1 764 417 281 0 0 chr11 23488191 23488287 -98355569 - B3A SINE B2 -96 102 7 1 764 472 234 144 34 chr11 23488346 23488492 -98355364 - RSINE1 SINE B4 0 165 4 1 764 493 307 31 20 chr11 23488815 23489011 -98354845 + B3A SINE B2 1 198 0 1 764 182 91 0 29 chr11 23489112 23489146 -98354710 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 764 516 213 31 54 chr11 23489159 23489288 -98354568 + ID_B1 SINE B4 99 224 0 1 764 414 246 51 0 chr11 23489397 23489515 -98354341 - RSINE1 SINE B4 -40 125 2 1 764 461 269 0 8 chr11 23489556 23489676 -98354180 + B3A SINE B2 1 119 -79 1 764 262 187 73 0 chr11 23489710 23489775 -98354081 - B1F SINE Alu -45 72 3 1 764 217 267 17 0 chr11 23489722 23489782 -98354074 - ID_B1 SINE B4 -87 137 77 1 764 717 308 94 17 chr11 23490151 23490589 -98353267 + L1MA4 LINE L1 5479 5936 -364 1 764 335 262 11 59 chr11 23490801 23491182 -98352674 + CT-rich Low_complexity Low_complexity 1 362 0 1 764 232 200 27 0 chr11 23491321 23491396 -98352460 + CT-rich Low_complexity Low_complexity 2 78 0 1 764 298 276 23 38 chr11 23491526 23491658 -98352198 + CT-rich Low_complexity Low_complexity 1 130 0 1 764 442 109 39 10 chr11 23491768 23491870 -98351986 + CT-rich Low_complexity Low_complexity 1 105 0 1 764 1538 50 36 9 chr11 23492039 23492261 -98351595 - Lx3_Mus LINE L1 -705 6304 6077 1 764 5521 59 4 3 chr11 23492261 23492963 -98350893 + Lx3_Mus LINE L1 6302 7004 -5 1 764 471 109 164 82 chr11 23493097 23493207 -98350649 - B2_Mm2 SINE B2 -75 120 2 1 764 212 0 0 35 chr11 23493741 23493770 -98350086 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 1 764 289 105 123 0 chr11 23493770 23493827 -98350029 - B1_Mus2 SINE Alu -13 134 71 1 764 982 46 8 0 chr11 23494022 23494152 -98349704 - B1_Mus1 SINE Alu 0 148 18 1 764 213 317 0 0 chr11 23494299 23494359 -98349497 + ID4_ SINE ID 10 69 -14 1 764 1185 50 0 0 chr11 23494456 23494596 -98349260 + B1_Mm SINE Alu 2 141 -6 1 764 2532 146 14 31 chr11 23494757 23495181 -98348675 + MTC LTR MaLR 1 417 -4 1 764 538 212 68 43 chr11 23495590 23495753 -98348103 + Lx8 LINE L1 6923 7089 -384 1 764 1926 127 84 31 chr11 23495760 23495917 -98347939 + ORR1C1 LTR MaLR 3 160 -218 1 764 261 0 0 0 chr11 23495917 23495946 -98347910 + (CAGT)n Simple_repeat Simple_repeat 1 29 0 1 764 1926 127 84 31 chr11 23495946 23496145 -98347711 + ORR1C1 LTR MaLR 161 378 0 1 764 1223 287 32 6 chr11 23496152 23496495 -98347361 + Lx8 LINE L1 7122 7473 0 1 764 633 186 0 25 chr11 23496634 23496755 -98347101 + B1_Mur3 SINE Alu 32 149 0 1 764 1944 146 83 11 chr11 23496836 23497196 -98346660 - ORR1B1 LTR MaLR -8 386 1 1 764 446 273 46 15 chr11 23497196 23497326 -98346530 + B3A SINE B2 47 180 -18 1 764 461 214 61 0 chr11 23497383 23497481 -98346375 + RSINE1 SINE B4 46 149 -16 1 764 234 232 51 31 chr11 23497605 23497703 -98346153 - L1ME3B LINE L1 -219 6021 5922 1 764 729 207 14 14 chr11 23497781 23497928 -98345928 - B1_Mur2 SINE Alu 0 149 3 1 764 493 228 65 8 chr11 23497947 23498071 -98345785 - 7SK RNA RNA -199 132 2 1 764 548 214 17 8 chr11 23498196 23498314 -98345542 + RSINE1 SINE B4 25 143 -22 1 764 353 274 44 32 chr11 23498354 23498512 -98345344 + L1M5 LINE L1 5640 5799 -325 1 764 280 316 25 0 chr11 23498572 23498651 -98345205 + ID4_ SINE ID 2 82 -1 1 764 681 269 6 6 chr11 23498671 23498828 -98345028 + ID_B1 SINE B4 2 158 -66 1 764 3443 30 5 0 chr11 23498832 23499226 -98344630 + MTA_Mm LTR MaLR 1 396 0 1 764 3718 47 4 47 chr11 23499226 23499600 -98344256 + MTA_Mm-int LTR MaLR 1 375 -723 1 764 1644 51 5 18 chr11 23499600 23499820 -98344036 + L1Md_F2 LINE L1 6366 6582 0 1 764 3718 47 4 47 chr11 23499820 23500000 -98343856 + MTA_Mm-int LTR MaLR 376 531 -567 1 764 4031 64 14 12 chr11 23500000 23500566 -98343290 + MTA_Mm-int LTR MaLR 532 1098 0 1 764 3411 35 2 0 chr11 23500566 23500961 -98342895 + MTA_Mm LTR MaLR 1 396 0 1 764 354 161 0 46 chr11 23501015 23501080 -98342776 + B3 SINE B2 1 62 -154 2 764 5510 147 19 108 chr11 23501080 23501564 -98342292 - L1_Mm LINE L1 -273 5610 5151 3 764 381 97 359 9 chr11 23501564 23501667 -98342189 - B2_Mm2 SINE B2 -10 185 47 4 764 5510 147 19 108 chr11 23501667 23501680 -98342176 - L1_Mm LINE L1 -273 5150 5137 3 764 1086 85 20 137 chr11 23501680 23501884 -98341972 - B2_Mm2 SINE B2 -14 181 2 5 764 5510 147 19 108 chr11 23501884 23502576 -98341280 - L1_Mm LINE L1 -747 5136 4433 3 764 1553 61 0 5 chr11 23502575 23502790 -98341066 + Lx LINE L1 5628 5841 -813 6 764 4054 98 36 2 chr11 23502790 23503371 -98340485 + Lx LINE L1 6052 6652 -2 6 764 761 205 30 39 chr11 23503375 23503544 -98340312 + B3 SINE B2 58 210 -6 7 764 559 313 7 0 chr11 23503626 23503773 -98340083 - B1F SINE Alu -1 148 1 8 764 585 120 0 0 chr11 23503813 23503905 -98339951 + (GGAGA)n Simple_repeat Simple_repeat 2 93 0 9 764 237 250 248 9 chr11 23503968 23504073 -98339783 + Lx8 LINE L1 6822 6951 -522 1 764 22 35 0 0 chr11 23504146 23504175 -98339681 + AT_rich Low_complexity Low_complexity 1 29 0 1 764 253 146 0 0 chr11 23504196 23504237 -98339619 - B2_Mm2 SINE B2 -94 101 61 1 764 8078 92 2 5 chr11 23504240 23506227 -98337629 - L1_Mus3 LINE L1 0 6638 4659 1 764 314 284 96 32 chr11 23506845 23507096 -98336760 + L1MB7 LINE L1 5905 6171 -13 1 764 180 0 0 0 chr11 23507517 23507537 -98336319 + (T)n Simple_repeat Simple_repeat 1 20 0 1 764 1445 53 27 0 chr11 23507537 23507725 -98336131 - B2_Mm1t SINE B2 0 193 1 1 764 542 293 43 7 chr11 23507764 23508077 -98335779 + L1ME2z LINE L1 5669 5995 -247 1 764 471 245 28 0 chr11 23508611 23508717 -98335139 + PB1D10 SINE Alu 2 110 -7 1 764 252 0 0 0 chr11 23508810 23508838 -98335018 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 764 741 250 98 28 chr11 23509556 23509873 -98333983 + RLTR15 LTR ERVK 1 339 -20 2 764 541 86 0 21 chr11 23510223 23510318 -98333538 + (TATG)n Simple_repeat Simple_repeat 4 96 0 2 764 377 291 46 30 chr11 23510318 23510449 -98333407 - B1F SINE Alu -16 133 1 2 764 263 302 140 40 chr11 23510564 23510664 -98333192 - PB1D7 SINE Alu -10 110 1 2 764 1121 168 21 10 chr11 23510701 23510894 -98332962 - B3 SINE B2 0 216 22 2 764 378 274 0 31 chr11 23511258 23511356 -98332500 - B3 SINE B2 -90 126 32 2 764 341 327 65 37 chr11 23511569 23511677 -98332179 + PB1D10 SINE Alu 7 117 0 2 764 241 239 0 0 chr11 23512112 23512158 -98331698 + polypyrimidine Low_complexity Low_complexity 1 46 0 2 764 393 22 0 0 chr11 23512158 23512204 -98331652 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 764 249 265 101 86 chr11 23512546 23512744 -98331112 + L2 LINE L2 1723 1923 -1496 2 764 331 315 110 12 chr11 23513037 23513201 -98330655 + B3A SINE B2 3 182 -16 3 764 576 335 47 11 chr11 23513447 23513637 -98330219 + B3A SINE B2 2 198 0 3 764 332 277 254 4 chr11 23513721 23513957 -98329899 + L1M5 LINE L1 4823 5117 -1029 3 764 274 332 107 83 chr11 23513968 23514484 -98329372 + L2 LINE L2 2285 2812 -607 2 764 522 302 48 0 chr11 23514692 23514818 -98329038 + RSINE1 SINE B4 3 134 -31 3 764 413 45 21 53 chr11 23514823 23514917 -98328939 + (CA)n Simple_repeat Simple_repeat 1 91 0 3 764 22 35 0 0 chr11 23514929 23514958 -98328898 + AT_rich Low_complexity Low_complexity 1 29 0 3 764 22 35 0 0 chr11 23515052 23515081 -98328775 + AT_rich Low_complexity Low_complexity 1 29 0 3 764 454 197 13 0 chr11 23515632 23515708 -98328148 - B3 SINE B2 -139 77 1 3 764 1343 95 11 0 chr11 23516209 23516399 -98327457 - B2_Mm1t SINE B2 0 193 2 3 764 35 0 0 0 chr11 23516453 23516488 -98327368 + AT_rich Low_complexity Low_complexity 1 35 0 3 764 201 74 0 0 chr11 23516496 23516523 -98327333 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 764 833 122 0 125 chr11 23516664 23516832 -98327024 + B1_Mus1 SINE Alu 1 147 -1 4 764 576 130 0 0 chr11 23518032 23518124 -98325732 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 764 821 240 56 10 chr11 23518199 23518397 -98325459 - B3 SINE B2 -6 210 4 4 764 207 0 0 0 chr11 23518540 23518563 -98325293 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 764 359 295 0 0 chr11 23518566 23518644 -98325212 - ID4_ SINE ID -5 78 1 4 764 2001 279 149 47 chr11 23518843 23520032 -98323824 - Charlie1a DNA MER1_type -6 1449 140 4 764 578 248 13 27 chr11 23521030 23521179 -98322677 + B1F SINE Alu 3 149 0 4 764 246 218 100 33 chr11 23521295 23521385 -98322471 + B4 SINE B4 130 225 -67 4 764 420 244 23 0 chr11 23521576 23521662 -98322194 + RSINE1 SINE B4 4 91 -74 4 764 210 295 37 37 chr11 23521705 23521786 -98322070 + ID4_ SINE ID 2 82 -1 5 764 6767 54 20 0 chr11 23522844 23523749 -98320107 - L1_Mus2 LINE L1 0 6566 5644 5 764 700 230 0 13 chr11 23523966 23524116 -98319740 + B1_Mur2 SINE Alu 2 149 0 5 764 251 310 97 29 chr11 23524131 23524163 -98319693 + PB1D10 SINE Alu 5 86 -31 5 764 373 226 0 0 chr11 23524163 23524225 -98319631 + ID_B1 SINE B4 149 210 -14 5 764 744 265 82 10 chr11 23524436 23524642 -98319214 + ID_B1 SINE B4 3 223 -1 5 764 222 82 19 75 chr11 23525160 23525213 -98318643 + A-rich Low_complexity Low_complexity 2 51 0 5 764 674 269 19 0 chr11 23525561 23525717 -98318139 - B3 SINE B2 0 216 58 5 764 3877 79 0 4 chr11 23525847 23526356 -98317500 + L1_Mus1 LINE L1 6061 6567 0 5 764 741 160 179 16 chr11 23526395 23526579 -98317277 + B3 SINE B2 2 215 -1 5 764 549 191 0 0 chr11 23526776 23526860 -98316996 - 5S rRNA rRNA -36 85 2 6 764 310 232 0 0 chr11 23527040 23527096 -98316760 - ID4_ SINE ID -5 78 23 6 764 558 108 0 0 chr11 23527235 23527318 -98316538 + (A)n Simple_repeat Simple_repeat 1 83 0 6 764 510 148 25 0 chr11 23527810 23527886 -98315970 + B1F1 SINE Alu 23 100 -49 6 764 314 273 0 10 chr11 23527886 23527958 -98315898 + PB1D10 SINE Alu 3 71 -49 6 764 345 242 58 87 chr11 23527891 23527914 -98315942 + MT2B2 LTR ERVL 187 287 -297 6 764 831 146 0 8 chr11 23527991 23528122 -98315734 + B3 SINE B2 1 130 -86 6 764 442 139 76 0 chr11 23528400 23528479 -98315377 + B1_Mur4 SINE Alu 1 85 -65 6 764 254 214 78 67 chr11 23528405 23528495 -98315361 + 4.5SRNA scRNA scRNA 4 94 0 6 764 21 0 0 0 chr11 23528502 23528523 -98315333 + AT_rich Low_complexity Low_complexity 1 21 0 6 764 372 64 0 0 chr11 23528523 23528570 -98315286 - B1_Mur3 SINE Alu -36 113 67 7 764 359 279 29 9 chr11 23528593 23528698 -98315158 + B3 SINE B2 108 214 -2 7 764 1141 75 0 7 chr11 23529279 23529427 -98314429 - B1_Mus1 SINE Alu -1 147 1 7 764 381 280 92 64 chr11 23530040 23530181 -98313675 - MIRc SINE MIR -89 179 35 7 764 186 274 53 40 chr11 23530406 23530482 -98313374 - L2b LINE L2 -18 3357 3281 7 764 831 266 5 20 chr11 23530934 23531130 -98312726 + B3 SINE B2 19 211 -5 7 764 363 303 84 13 chr11 23531217 23531368 -98312488 + MIR SINE MIR 2 167 -41 7 764 325 286 77 0 chr11 23531557 23531648 -98312208 + MIRb SINE MIR 147 244 -24 7 764 333 275 77 0 chr11 23531783 23531874 -98311982 - PB1D10 SINE Alu -19 98 1 7 764 22 0 0 0 chr11 23532331 23532353 -98311503 + AT_rich Low_complexity Low_complexity 1 22 0 7 764 29 60 0 0 chr11 23532770 23532820 -98311036 + AT_rich Low_complexity Low_complexity 1 50 0 8 764 230 56 0 27 chr11 23533377 23533414 -98310442 + (CCCG)n Simple_repeat Simple_repeat 1 36 0 8 764 322 332 158 14 chr11 23533991 23534269 -98309587 + MLT1J-int LTR MaLR 33 350 -1037 8 764 369 95 0 0 chr11 23534269 23534332 -98309524 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 764 195 42 0 0 chr11 23535003 23535027 -98308829 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 8 764 1206 54 0 0 chr11 23535028 23535175 -98308681 - B1_Mus2 SINE Alu 0 147 1 8 764 5688 218 82 23 chr11 23535189 23535686 -98308170 - Lx6 LINE L1 -177 7283 6731 8 764 699 65 0 0 chr11 23535686 23535779 -98308077 + (TC)n Simple_repeat Simple_repeat 2 94 0 8 764 5688 218 82 23 chr11 23535779 23536862 -98306994 - Lx6 LINE L1 -730 6730 5610 8 764 438 114 14 0 chr11 23536863 23536933 -98306923 + MTC LTR MaLR 2 72 -349 8 764 4988 103 42 10 chr11 23536933 23537711 -98306145 + RLTR22_Mur LTR ERVK 1 803 -1045 8 764 1535 124 17 107 chr11 23537905 23538194 -98305662 + RLTR22_Mur LTR ERVK 1586 1848 0 8 764 553 182 5 247 chr11 23538216 23538406 -98305450 + B1_Mur3 SINE Alu 5 148 -1 9 764 211 175 35 0 chr11 23538444 23538501 -98305355 + CT-rich Low_complexity Low_complexity 2 60 0 9 764 425 191 0 0 chr11 23538545 23538613 -98305243 - B1_Mus1 SINE Alu -44 104 37 9 764 321 296 178 7 chr11 23538698 23538844 -98305012 - RMER21B LTR ERV1 -278 564 394 9 764 346 292 65 19 chr11 23539008 23539116 -98304740 + MTD LTR MaLR 99 211 -208 9 764 378 224 115 49 chr11 23539150 23539272 -98304584 + MT2A LTR ERVL 3 132 -401 9 764 25967 90 35 7 chr11 23539291 23540150 -98303706 + L1_Mus3 LINE L1 393 1282 -5352 9 764 2432 63 84 12 chr11 23540150 23540473 -98303383 + ORR1A1 LTR MaLR 1 346 0 9 764 25967 125 17 40 chr11 23540473 23541625 -98302231 + L1_Mus3 LINE L1 1283 2455 -3428 9 764 198 0 0 0 chr11 23541625 23541647 -98302209 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 764 25967 113 19 32 chr11 23541647 23542356 -98301500 + L1_Mus3 LINE L1 2456 3165 -3473 9 764 495 43 14 0 chr11 23542356 23542426 -98301430 + B1_Mm SINE Alu 76 146 -1 9 764 25967 113 19 32 chr11 23542426 23543872 -98299984 + L1_Mus3 LINE L1 3166 4614 -2024 9 764 212 204 41 0 chr11 23543872 23543921 -98299935 + B2_Mm2 SINE B2 3 53 -142 1 764 25967 113 19 32 chr11 23543921 23545935 -98297921 + L1_Mus3 LINE L1 4615 6637 -1 9 764 959 76 75 8 chr11 23547273 23547399 -98296457 + B1_Mus1 SINE Alu 2 137 -11 1 764 294 29 0 0 chr11 23547399 23547434 -98296422 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 764 767 51 161 0 chr11 23548298 23548416 -98295440 - BC1_Mm scRNA scRNA -15 137 1 1 764 22 35 0 0 chr11 23548831 23548860 -98294996 + AT_rich Low_complexity Low_complexity 1 29 0 1 764 3497 87 2 0 chr11 23549678 23550147 -98293709 + L1_Mus4 LINE L1 6164 6633 -3 1 764 244 298 0 66 chr11 23550273 23550334 -98293522 - PB1 SINE Alu -57 70 14 1 764 567 202 30 0 chr11 23550680 23550779 -98293077 + PB1D7 SINE Alu 9 110 -10 1 764 529 56 125 0 chr11 23551260 23551332 -98292524 - B1_Mm SINE Alu -11 136 56 1 764 255 224 0 65 chr11 23551285 23551347 -98292509 - MT2B LTR ERVL -344 257 200 1 764 256 268 0 0 chr11 23551527 23551583 -98292273 - Cheshire DNA MER1_type -1856 564 509 1 764 1539 123 86 83 chr11 23551668 23551995 -98291861 + ORR1A4 LTR MaLR 1 328 -1 1 764 260 293 0 0 chr11 23552002 23552060 -98291796 + ID4 SINE ID 16 73 -10 1 764 1708 124 65 14 chr11 23552082 23552380 -98291476 - ORR1C1 LTR MaLR 0 378 49 1 764 325 241 194 0 chr11 23552349 23552457 -98291399 - Cheshire DNA MER1_type -2166 254 126 1 764 274 246 0 0 chr11 23552505 23552566 -98291290 - B4A SINE B4 0 292 232 1 764 1208 116 17 0 chr11 23552567 23552748 -98291108 - B2_Mm2 SINE B2 -6 189 6 1 764 777 278 51 28 chr11 23552762 23552977 -98290879 - B4A SINE B4 -72 220 1 1 764 492 287 14 29 chr11 23553315 23553455 -98290401 - B1F SINE Alu -6 143 6 1 764 476 261 0 35 chr11 23553528 23553643 -98290213 - PB1D9 SINE Alu 0 120 10 1 764 297 333 234 20 chr11 23553886 23554284 -98289572 + L2a LINE L2 2943 3425 -1 1 764 238 319 0 100 chr11 23554571 23554651 -98289205 - ID4 SINE ID -11 72 1 1 764 242 242 258 0 chr11 23554919 23554981 -98288875 - ID4_ SINE ID 0 83 6 1 764 620 185 103 75 chr11 23556277 23556423 -98287433 + B3 SINE B2 1 150 -66 1 764 394 295 18 9 chr11 23557101 23557214 -98286642 - L1MB7 LINE L1 -148 6036 5923 1 764 491 303 143 18 chr11 23557474 23557746 -98286110 + MER82 DNA MER2_type 190 495 -158 1 764 362 295 0 31 chr11 23558150 23558248 -98285608 - B1F1 SINE Alu 0 149 55 1 764 536 213 65 8 chr11 23558271 23558394 -98285462 - B1F SINE Alu -1 148 19 1 764 384 22 0 0 chr11 23558532 23558577 -98285279 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 764 481 278 112 31 chr11 23558615 23558838 -98285018 - L1MB7 LINE L1 -457 5727 5487 1 764 657 231 45 0 chr11 23558890 23559024 -98284832 - ID_B1 SINE B4 -5 219 80 1 764 227 273 30 0 chr11 23559025 23559091 -98284765 - L1MB7 LINE L1 -734 5437 5370 1 764 364 270 270 0 chr11 23559166 23559281 -98284575 - RSINE1 SINE B4 -17 148 3 1 764 945 237 43 5 chr11 23559380 23559588 -98284268 - B3 SINE B2 0 216 1 1 764 481 280 43 43 chr11 23559690 23559854 -98284002 + RSINE1 SINE B4 1 164 -1 1 764 3166 221 50 62 chr11 23560343 23561167 -98282689 + Lx8 LINE L1 6327 7140 -333 1 764 236 159 130 0 chr11 23561255 23561324 -98282532 + Lx8 LINE L1 7394 7471 -2 1 764 818 203 0 63 chr11 23561726 23561884 -98281972 + B1_Mur1 SINE Alu 1 148 -1 1 764 216 0 0 0 chr11 23562104 23562128 -98281728 + (CTG)n Simple_repeat Simple_repeat 1 24 0 1 764 375 293 96 40 chr11 23562305 23562504 -98281352 + L1MEg LINE L1 344 553 -5531 1 764 710 247 152 44 chr11 23562794 23563044 -98280812 + B4A SINE B4 2 278 -14 1 764 391 234 91 27 chr11 23563090 23563200 -98280656 + PB1D10 SINE Alu 1 117 0 1 764 285 209 0 0 chr11 23563201 23563268 -98280588 + A-rich Low_complexity Low_complexity 1 67 0 1 764 310 312 29 88 chr11 23563270 23563407 -98280449 + L1MEg LINE L1 1025 1153 -4931 1 764 1090 142 179 0 chr11 23563704 23563894 -98279962 + URR1B DNA MER1_type 2 225 0 1 764 309 281 9 46 chr11 23563972 23564080 -98279776 + PB1D10 SINE Alu 14 117 0 1 764 223 188 0 20 chr11 23564080 23564129 -98279727 + GA-rich Low_complexity Low_complexity 1 48 0 1 764 1109 106 66 82 chr11 23564252 23564448 -98279408 - B2_Mm2 SINE B2 0 195 3 1 764 23 0 0 0 chr11 23565562 23565585 -98278271 + GC_rich Low_complexity Low_complexity 1 23 0 1 764 32 26 0 0 chr11 23565754 23565793 -98278063 + GC_rich Low_complexity Low_complexity 1 39 0 1 764 408 299 65 0 chr11 23566725 23566832 -98277024 - B1F2 SINE Alu -34 115 2 1 764 2929 46 0 6 chr11 23567519 23567868 -98275988 + L1Md_F2 LINE L1 6236 6582 0 1 764 322 260 39 13 chr11 23568282 23568360 -98275496 - RSINE1 SINE B4 -63 102 23 1 764 270 234 125 0 chr11 23568434 23568498 -98275358 - ID2 SINE ID -9 74 3 1 764 498 254 32 8 chr11 23569072 23569195 -98274661 - MIRb SINE MIR -108 160 35 1 764 230 296 311 24 chr11 23569189 23569356 -98274500 + MIR SINE MIR 21 235 -33 1 764 259 261 17 51 chr11 23570208 23570325 -98273531 + (CATATA)n Simple_repeat Simple_repeat 4 116 0 1 764 360 234 39 13 chr11 23570477 23570555 -98273301 - ID4_ SINE ID -1 82 3 1 764 1993 195 75 63 chr11 23570765 23571051 -98272805 - RLTR40 LTR ERVK -7 810 548 1 764 731 171 198 18 chr11 23571051 23571218 -98272638 - B3A SINE B2 0 198 2 1 764 1993 195 75 63 chr11 23571218 23571424 -98272432 - RLTR40 LTR ERVK -270 547 312 1 764 1131 156 156 13 chr11 23571615 23571916 -98271940 - RLTR40 LTR ERVK -473 344 1 1 764 320 172 26 177 chr11 23572028 23572141 -98271715 - PB1D9 SINE Alu -8 112 17 1 764 262 268 125 0 chr11 23572095 23572207 -98271649 + MT2B LTR ERVL 110 235 -366 1 764 217 366 24 0 chr11 23573413 23573495 -98270361 + ID_B1 SINE B4 81 164 -60 1 764 753 275 26 21 chr11 23573501 23573694 -98270162 - RCHARR1 DNA MER1_type -777 197 4 1 764 378 253 12 0 chr11 23573808 23573891 -98269965 + B1F SINE Alu 1 84 -65 1 764 215 330 120 43 chr11 23573892 23574009 -98269847 - MER5A DNA MER1_type -57 132 7 1 764 501 84 0 0 chr11 23574065 23574136 -98269720 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 764 542 280 24 0 chr11 23574140 23574265 -98269591 - RSINE1 SINE B4 -35 130 3 1 764 918 134 8 0 chr11 23574501 23574635 -98269221 + B1_Mur4 SINE Alu 8 142 -8 1 764 422 267 79 0 chr11 23574664 23574765 -98269091 + PB1D7 SINE Alu 1 109 -11 1 764 189 0 0 0 chr11 23575254 23575275 -98268581 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 764 24 77 0 0 chr11 23575801 23575853 -98268003 + AT_rich Low_complexity Low_complexity 1 52 0 1 764 195 162 0 0 chr11 23577081 23577118 -98266738 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 1 764 6872 120 47 19 chr11 23577118 23578169 -98265687 - Lx4A LINE L1 -7 7051 5972 1 764 222 231 0 0 chr11 23578575 23578627 -98265229 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 764 559 248 65 7 chr11 23578627 23578781 -98265075 - RSINE1 SINE B4 0 165 3 1 764 851 239 86 57 chr11 23578973 23579253 -98264603 - RMER15-int LTR ERVL -118 4881 4594 1 764 1230 61 0 20 chr11 23579623 23579773 -98264083 - B1_Mm SINE Alu 0 147 1 1 764 39 38 0 0 chr11 23579861 23579914 -98263942 + AT_rich Low_complexity Low_complexity 1 53 0 1 764 216 0 0 0 chr11 23579915 23579939 -98263917 + (T)n Simple_repeat Simple_repeat 1 24 0 1 764 243 277 96 29 chr11 23580009 23580113 -98263743 + ID_B1 SINE B4 65 175 -49 1 764 381 204 106 11 chr11 23580033 23580127 -98263729 + PB1D10 SINE Alu 6 108 -9 1 764 676 225 205 30 chr11 23580520 23580754 -98263102 - B4 SINE B4 -15 277 3 1 764 586 310 75 26 chr11 23580800 23581065 -98262791 - B4A SINE B4 -14 278 1 1 764 551 306 12 25 chr11 23581198 23581359 -98262497 + RSINE1 SINE B4 5 163 -2 1 764 511 235 54 102 chr11 23581633 23581799 -98262057 - RSINE1 SINE B4 0 165 8 1 764 644 312 19 0 chr11 23581846 23582006 -98261850 - RSINE1 SINE B4 0 165 3 1 764 204 330 185 60 chr11 23583128 23583344 -98260512 - MIRc SINE MIR -22 246 4 1 764 928 258 10 108 chr11 23583528 23583824 -98260032 + B4 SINE B4 8 274 -18 1 764 552 191 193 29 chr11 23583822 23583962 -98259894 - B3 SINE B2 -53 163 1 1 764 535 207 17 25 chr11 23583990 23584109 -98259747 - PB1D9 SINE Alu -1 119 2 1 764 460 273 158 24 chr11 23584111 23584276 -98259580 - B3A SINE B2 -2 196 10 1 764 740 251 68 13 chr11 23584724 23584958 -98258898 - L1MA6 LINE L1 -1 6299 6053 1 764 305 147 51 128 chr11 23584994 23585072 -98258784 - HAL1-3A_ME LINE L1 -811 2047 1976 1 764 192 200 0 0 chr11 23585072 23585122 -98258734 + (CGTG)n Simple_repeat Simple_repeat 4 53 0 1 764 220 200 50 0 chr11 23585122 23585182 -98258674 + CT-rich Low_complexity Low_complexity 2 64 0 1 764 599 152 19 0 chr11 23585403 23585508 -98258348 - ID_B1 SINE B4 -4 220 114 1 764 979 196 16 27 chr11 23585995 23586179 -98257677 - B3A SINE B2 -10 188 7 1 764 742 293 72 36 chr11 23586719 23587105 -98256751 - Lx9 LINE L1 -217 7427 7028 1 764 1290 228 218 21 chr11 23587115 23587634 -98256222 - Lx9 LINE L1 -888 6756 6136 1 764 380 271 13 46 chr11 23587893 23588044 -98255812 + B1F1 SINE Alu 3 148 -1 1 764 335 296 30 30 chr11 23588079 23588186 -98255670 + PB1D10 SINE Alu 13 117 0 1 764 296 291 11 56 chr11 23588191 23588332 -98255524 + ID4_ SINE ID 7 136 -16 1 764 488 239 7 88 chr11 23589133 23589280 -98254576 - ID_B1 SINE B4 -22 202 68 1 764 390 143 23 0 chr11 23589427 23589496 -98254360 + B1_Mur2 SINE Alu 73 145 -2 1 764 232 143 18 18 chr11 23589497 23589554 -98254302 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 1 764 223 96 19 19 chr11 23590147 23590200 -98253656 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 1 764 1281 61 0 0 chr11 23590200 23590347 -98253509 - B1_Mus1 SINE Alu 0 148 2 2 764 9929 79 37 8 chr11 23590700 23591762 -98252094 - Lx3_Mus LINE L1 0 7009 5923 2 764 207 100 0 0 chr11 23591762 23591792 -98252064 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 95 10778 51 35 17 chr11 23591792 23593209 -98250647 - Lx3_Mus LINE L1 -1087 5922 4470 2 765 695 260 70 20 chr11 23593233 23593433 -98250423 - B3 SINE B2 0 216 7 2 765 505 211 8 34 chr11 23593426 23593544 -98250312 - ID_B1 SINE B4 0 224 110 2 765 365 306 31 31 chr11 23594067 23594259 -98249597 + Charlie1 DNA MER1_type 2590 2781 0 2 765 2406 158 9 93 chr11 23594270 23594605 -98249251 - MTC LTR MaLR 0 421 104 2 765 198 0 0 0 chr11 23594605 23594627 -98249229 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2 765 2406 158 9 93 chr11 23594627 23594652 -98249204 - MTC LTR MaLR -318 103 99 2 765 808 147 15 8 chr11 23594652 23594782 -98249074 - B1_Mur4 SINE Alu -19 131 1 2 765 2406 158 9 93 chr11 23594782 23594880 -98248976 - MTC LTR MaLR -323 98 1 2 765 757 214 68 29 chr11 23595196 23595403 -98248453 - Lx9 LINE L1 -189 7455 7241 2 765 237 98 0 0 chr11 23596137 23596178 -98247678 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 2 765 959 237 36 5 chr11 23596440 23596635 -98247221 - B3 SINE B2 -15 201 1 2 765 333 195 36 12 chr11 23597405 23597488 -98246368 - Lx8 LINE L1 -2 7471 7387 2 765 510 293 60 0 chr11 23597808 23597958 -98245898 - MTEb LTR MaLR -59 320 162 2 765 919 177 14 0 chr11 23598652 23598799 -98245057 + B1_Mur1 SINE Alu 1 149 0 2 765 380 281 10 0 chr11 23599085 23599181 -98244675 - B3 SINE B2 -110 106 10 2 765 248 290 165 27 chr11 23599221 23599409 -98244447 - L1ME2z LINE L1 -3 6441 6228 2 765 324 0 0 0 chr11 23599530 23599566 -98244290 + (T)n Simple_repeat Simple_repeat 1 36 0 2 765 670 203 38 0 chr11 23599566 23599699 -98244157 - ID_B1 SINE B4 0 224 87 2 765 2875 76 229 5 chr11 23600336 23600760 -98243096 - MURVY-LTR LTR ERV1 0 519 1 2 765 306 0 0 0 chr11 23601462 23601496 -98242360 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2 765 1231 57 6 0 chr11 23601496 23601655 -98242201 - B2_Mm1t SINE B2 -33 160 1 2 765 528 185 1 19 chr11 23601692 23601824 -98242032 + B3A SINE B2 1 125 -70 2 765 837 184 21 0 chr11 23601926 23602067 -98241789 + B1_Mus2 SINE Alu 2 145 -2 2 765 320 284 101 0 chr11 23602703 23602812 -98241044 + L2a LINE L2 3281 3400 -26 2 765 313 207 0 0 chr11 23603319 23603377 -98240479 + RSINE1 SINE B4 2 59 -106 2 765 8142 28 8 1 chr11 23603389 23604336 -98239520 - L1Md_F3 LINE L1 -14 6570 5617 2 765 324 309 18 26 chr11 23604336 23604449 -98239407 + RSINE1 SINE B4 54 165 0 2 765 472 200 106 26 chr11 23604967 23605080 -98238776 - ID_B1 SINE B4 0 224 103 2 765 1257 55 7 0 chr11 23605831 23605976 -98237880 - B1_Mus2 SINE Alu -1 146 1 2 765 286 275 76 11 chr11 23606027 23606119 -98237737 + B4A SINE B4 3 100 -192 2 765 251 229 32 117 chr11 23606140 23606234 -98237622 + B3A SINE B2 97 182 -16 2 765 1545 75 5 0 chr11 23606365 23606553 -98237303 - B2_Mm1a SINE B2 -4 189 1 2 765 225 154 19 19 chr11 23607116 23607169 -98236687 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 765 185 276 24 8 chr11 23607212 23607336 -98236520 + CT-rich Low_complexity Low_complexity 1 126 0 2 765 900 156 13 20 chr11 23607340 23607490 -98236366 - B1_Mur2 SINE Alu 0 149 1 2 765 262 243 143 0 chr11 23607614 23607684 -98236172 - B1_Mur2 SINE Alu -7 142 63 2 765 1411 268 79 12 chr11 23607684 23607778 -98236078 - MTE2a-int LTR MaLR -595 985 893 2 765 384 22 0 0 chr11 23607778 23607823 -98236033 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 765 1411 268 79 12 chr11 23607823 23608133 -98235723 - MTE2a-int LTR MaLR -688 892 554 2 765 932 250 38 38 chr11 23608121 23608387 -98235469 - MTE2a-int LTR MaLR -1290 290 25 2 765 294 139 139 0 chr11 23608410 23608482 -98235374 - MTE2a LTR MaLR -3 376 295 2 765 282 222 60 24 chr11 23608482 23608565 -98235291 + MTE2a LTR MaLR 160 245 -134 2 765 210 301 68 0 chr11 23609007 23609080 -98234776 + ID2 SINE ID 1 78 -5 2 765 197 247 104 66 chr11 23609249 23609380 -98234476 + MIR SINE MIR 19 142 -66 2 765 827 212 31 56 chr11 23609560 23609755 -98234101 + B3 SINE B2 27 216 0 2 765 598 209 335 19 chr11 23610355 23610516 -98233340 + B3 SINE B2 2 213 -3 2 765 1154 82 7 0 chr11 23610519 23610665 -98233191 - B1_Mus1 SINE Alu 0 148 2 2 765 337 261 136 0 chr11 23610733 23610821 -98233035 + B1F SINE Alu 13 112 -37 2 765 393 255 39 10 chr11 23610896 23610999 -98232857 + B3 SINE B2 109 214 -2 2 765 242 0 61 0 chr11 23611610 23611643 -98232213 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 765 577 262 23 15 chr11 23613218 23613350 -98230506 - B3A SINE B2 -65 133 1 2 765 682 279 14 81 chr11 23613393 23613442 -98230414 - B4A SINE B4 0 292 247 2 765 2252 140 70 20 chr11 23613442 23613843 -98230013 - MTC LTR MaLR 0 421 1 2 765 682 281 13 88 chr11 23613843 23614033 -98229823 - B4A SINE B4 -46 246 81 2 765 764 222 58 0 chr11 23614033 23614204 -98229652 - B3A SINE B2 -14 184 4 2 765 612 293 6 148 chr11 23614204 23614300 -98229556 - B4 SINE B4 -212 80 4 2 765 443 230 253 84 chr11 23614766 23614956 -98228900 + ID_B1 SINE B4 1 222 -2 2 765 509 174 91 9 chr11 23614966 23615076 -98228780 + PB1D9 SINE Alu 2 120 0 2 765 235 179 36 0 chr11 23615080 23615107 -98228749 + A-rich Low_complexity Low_complexity 1 29 0 2 765 742 139 70 35 chr11 23615107 23615249 -98228607 + B1_Mur2 SINE Alu 2 148 -1 2 765 235 179 36 0 chr11 23615249 23615277 -98228579 + A-rich Low_complexity Low_complexity 30 57 0 2 765 379 258 82 50 chr11 23616152 23616311 -98227545 + RSINE1 SINE B4 2 165 0 2 765 207 315 158 23 chr11 23616409 23616542 -98227314 + L2b LINE L2 3199 3349 -26 2 765 199 280 118 74 chr11 23616688 23616823 -98227033 + MIR SINE MIR 2 142 -120 2 765 508 183 54 0 chr11 23617877 23617970 -98225886 + PB1D9 SINE Alu 14 111 -9 2 765 408 20 0 0 chr11 23617991 23618040 -98225816 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 765 673 274 156 19 chr11 23618903 23619275 -98224581 + L1M4 LINE L1 5297 5719 -459 2 765 508 321 7 7 chr11 23619291 23619426 -98224430 + ID_B1 SINE B4 90 224 0 2 765 325 296 80 22 chr11 23619482 23619620 -98224236 - MER44A DNA MER2_type -7 332 186 2 765 796 203 66 22 chr11 23619627 23619671 -98224185 + B3 SINE B2 28 71 -145 2 765 315 104 0 0 chr11 23619671 23619719 -98224137 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 765 796 203 66 22 chr11 23619719 23619855 -98224001 + B3 SINE B2 72 215 -1 2 765 258 267 141 28 chr11 23619826 23620003 -98223853 - MER44A DNA MER2_type -98 241 45 2 765 246 90 83 62 chr11 23620364 23620441 -98223415 - B2_Mm2 SINE B2 -111 87 1 2 765 247 233 133 0 chr11 23620452 23620512 -98223344 + MIR SINE MIR 74 141 -121 2 765 693 306 69 27 chr11 23620723 23620985 -98222871 + B4A SINE B4 2 274 -18 2 765 1057 31 0 0 chr11 23621944 23622071 -98221785 + B1_Mus2 SINE Alu 21 147 0 2 765 222 223 158 11 chr11 23622333 23622428 -98221428 - B1F SINE Alu -17 132 24 2 765 534 229 103 103 chr11 23622345 23622495 -98221361 - ID_B1 SINE B4 -27 197 36 2 765 2044 142 22 22 chr11 23622495 23622905 -98220951 + RMER17C LTR ERVK 1 410 0 2 765 534 229 103 103 chr11 23622905 23622949 -98220907 - ID SINE ID -189 35 3 2 765 620 176 23 3 chr11 23623038 23623156 -98220700 + B1_Mus2 SINE Alu 1 120 0 2 765 403 182 52 0 chr11 23623308 23623385 -98220471 + ID4_ SINE ID 1 81 -2 2 765 569 58 12 0 chr11 23623654 23623740 -98220116 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 765 697 182 66 0 chr11 23623929 23624066 -98219790 - B1_Mur2 SINE Alu -2 147 2 2 765 441 222 77 0 chr11 23625650 23625763 -98218093 - PB1D10 SINE Alu -20 129 11 2 765 254 261 10 115 chr11 23625673 23625777 -98218079 - MT2B LTR ERVL -343 258 166 2 765 408 292 26 17 chr11 23626495 23626610 -98217246 - PB1D10 SINE Alu -1 116 1 2 765 266 270 15 45 chr11 23627031 23627097 -98216759 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 2 765 230 282 9 97 chr11 23627983 23628097 -98215759 + B3A SINE B2 94 197 -1 2 765 479 216 0 20 chr11 23628112 23628218 -98215638 + B1_Mur4 SINE Alu 1 97 -52 2 765 207 0 0 0 chr11 23628368 23628391 -98215465 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 765 768 174 28 21 chr11 23628417 23628558 -98215298 + B1_Mur2 SINE Alu 6 147 -2 2 765 271 208 51 102 chr11 23628640 23628758 -98215098 + PB1D10 SINE Alu 5 116 -1 2 765 972 236 24 0 chr11 23629208 23629416 -98214440 - B3 SINE B2 0 216 4 2 765 652 215 31 0 chr11 23629686 23629816 -98214040 + B1_Mm SINE Alu 7 140 -7 2 765 350 123 31 0 chr11 23629979 23630044 -98213812 + (CATA)n Simple_repeat Simple_repeat 4 70 0 2 765 237 211 0 0 chr11 23630479 23630531 -98213325 - ID_B1 SINE B4 0 224 173 2 765 402 191 60 0 chr11 23630487 23630571 -98213285 - PB1D10 SINE Alu -8 109 21 2 765 1312 83 28 0 chr11 23630575 23630755 -98213101 + B2_Mm2 SINE B2 2 186 -9 2 765 324 204 31 5 chr11 23633441 23633541 -98210315 - B1_Mus2 SINE Alu -7 140 9 2 765 3423 40 150 2 chr11 23633637 23634089 -98209767 + MURVY-LTR LTR ERV1 1 519 0 2 765 359 301 0 10 chr11 23634414 23634518 -98209338 - PB1D10 SINE Alu -12 105 3 2 765 941 177 178 22 chr11 23634547 23634825 -98209031 - MTD LTR MaLR -44 375 3 2 765 352 333 63 19 chr11 23635372 23635531 -98208325 - L1MC4 LINE L1 -793 7249 7084 2 765 185 83 28 0 chr11 23635551 23635587 -98208269 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 2 765 546 280 121 13 chr11 23635628 23635867 -98207989 - L1MC4 LINE L1 -989 7053 6789 2 765 465 301 16 16 chr11 23635896 23636021 -98207835 - RSINE1 SINE B4 -6 159 35 2 765 451 264 62 0 chr11 23636058 23636237 -98207619 + L1M2 LINE L1 3649 3844 -2296 3 765 289 261 67 67 chr11 23636337 23636456 -98207400 + PB1D7 SINE Alu 1 119 -1 3 765 474 295 18 9 chr11 23636471 23636584 -98207272 + ID_B1 SINE B4 2 115 -109 3 765 183 139 0 0 chr11 23636770 23636806 -98207050 + (A)n Simple_repeat Simple_repeat 1 36 0 3 765 325 289 10 224 chr11 23637069 23637194 -98206662 + ID_B1 SINE B4 4 157 -67 3 765 330 282 42 0 chr11 23637194 23637265 -98206591 + B1F2 SINE Alu 6 79 -70 3 765 241 333 74 0 chr11 23637343 23637424 -98206432 - PB1 SINE Alu -37 90 4 2 765 578 240 20 33 chr11 23637656 23637807 -98206049 - B1_Mur4 SINE Alu -1 149 1 3 765 324 140 17 0 chr11 23637857 23637928 -98205928 + B1_Mus2 SINE Alu 40 141 -6 3 765 597 14 0 0 chr11 23637928 23637998 -98205858 + (CAAAC)n Simple_repeat Simple_repeat 2 71 0 3 765 250 132 0 36 chr11 23639695 23639750 -98204106 + GA-rich Low_complexity Low_complexity 3 55 0 3 765 551 267 57 59 chr11 23641089 23641310 -98202546 + ID_B1 SINE B4 2 234 -58 3 765 269 333 75 5 chr11 23641310 23641509 -98202347 - L2 LINE L2 -767 2652 2440 3 765 237 272 86 0 chr11 23641518 23641599 -98202257 - BC1_Mm scRNA scRNA -56 96 9 3 765 378 323 145 8 chr11 23641605 23641736 -98202120 - B1F SINE Alu 0 149 1 3 765 1208 61 0 0 chr11 23643883 23644031 -98199825 + B1_Mus1 SINE Alu 1 148 0 3 765 234 0 0 0 chr11 23644031 23644057 -98199799 + (A)n Simple_repeat Simple_repeat 1 26 0 3 765 836 27 55 0 chr11 23644874 23644984 -98198872 + B1_Mus2 SINE Alu 32 147 0 3 765 195 42 0 0 chr11 23644984 23645008 -98198848 + (A)n Simple_repeat Simple_repeat 1 24 0 3 765 227 308 25 91 chr11 23645198 23645327 -98198529 + B4A SINE B4 4 123 -169 3 765 315 71 0 0 chr11 23645366 23645408 -98198448 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 765 511 250 33 0 chr11 23645893 23646013 -98197843 - MTC LTR MaLR 0 419 296 3 765 738 201 38 14 chr11 23646014 23646182 -98197674 + B2_Mm2 SINE B2 22 192 -3 3 765 1724 156 22 19 chr11 23646162 23646476 -98197380 - MTC LTR MaLR -106 315 1 3 765 220 256 23 52 chr11 23646559 23646732 -98197124 + (TATG)n Simple_repeat Simple_repeat 3 170 0 3 765 304 289 80 37 chr11 23646739 23646903 -98196953 - B4 SINE B4 -7 285 103 3 765 431 250 11 0 chr11 23647281 23647373 -98196483 + RSINE1 SINE B4 38 130 -35 3 765 350 268 40 189 chr11 23647559 23647734 -98196122 + B4 SINE B4 76 224 -68 3 765 718 133 27 100 chr11 23647586 23647736 -98196120 + B1_Mur4 SINE Alu 12 150 0 3 765 568 13 13 26 chr11 23647761 23647839 -98196017 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 3 765 305 319 29 26 chr11 23648010 23648148 -98195708 - PB1D10 SINE Alu -10 139 1 3 765 664 203 71 21 chr11 23648391 23648532 -98195324 - B1_Mur2 SINE Alu -1 148 1 3 765 391 267 48 0 chr11 23648540 23648645 -98195211 - PB1D7 SINE Alu -6 114 5 3 765 22 56 0 0 chr11 23649732 23649768 -98194088 + AT_rich Low_complexity Low_complexity 1 36 0 3 765 446 266 173 41 chr11 23649943 23650186 -98193670 + B4 SINE B4 1 275 -17 3 765 210 37 0 0 chr11 23650400 23650427 -98193429 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 3 765 507 271 90 40 chr11 23650483 23650783 -98193073 + L1ME1 LINE L1 5769 6083 -96 3 765 250 222 123 0 chr11 23651181 23651262 -98192594 - PB1D9 SINE Alu -4 116 26 3 765 222 305 145 12 chr11 23651259 23651342 -98192514 - B4 SINE B4 -197 95 2 3 765 1118 71 148 0 chr11 23651436 23651605 -98192251 - B2_Mm2 SINE B2 -1 194 1 3 765 874 245 28 14 chr11 23651992 23652203 -98191653 + ID_B1 SINE B4 3 216 -8 3 765 598 257 130 11 chr11 23652464 23652641 -98191215 + B3 SINE B2 2 199 -17 3 765 282 296 130 0 chr11 23652677 23652785 -98191071 + ID_B1 SINE B4 84 205 -19 3 765 520 262 14 14 chr11 23652956 23653103 -98190753 + B1F1 SINE Alu 1 147 -2 3 765 232 228 51 34 chr11 23653498 23653557 -98190299 + ID_B1 SINE B4 80 139 -85 3 765 308 276 56 84 chr11 23653509 23653616 -98190240 + PB1D9 SINE Alu 8 111 -9 3 765 250 355 73 73 chr11 23653903 23654149 -98189707 + MER102a DNA MER1_type 57 302 -28 3 765 235 352 45 0 chr11 23654821 23654909 -98188947 + BC1_Mm scRNA scRNA 13 104 -48 3 765 561 286 99 23 chr11 23655075 23655247 -98188609 + MER58A DNA MER1_type 5 189 -35 3 765 892 170 0 20 chr11 23655388 23655538 -98188318 + B1_Mus1 SINE Alu 1 147 -1 3 765 451 282 0 35 chr11 23655935 23656049 -98187807 + PB1D7 SINE Alu 3 112 -8 3 765 828 122 64 7 chr11 23656248 23656388 -98187468 + B1_Mus1 SINE Alu 1 148 0 3 765 404 277 80 0 chr11 23656435 23656547 -98187309 + ID_B1 SINE B4 82 202 -22 3 765 537 206 111 30 chr11 23656628 23656763 -98187093 + RSINE1 SINE B4 4 149 -16 3 765 451 278 8 34 chr11 23657097 23657216 -98186640 + PB1D10 SINE Alu 1 116 -1 3 765 966 137 14 0 chr11 23657429 23657575 -98186281 + B1_Mur3 SINE Alu 2 149 0 3 765 2468 157 88 14 chr11 23657634 23658125 -98185731 + RLTR11A2 LTR ERVK 1 527 0 3 765 288 293 132 12 chr11 23658204 23658287 -98185569 + RSINE1 SINE B4 3 95 -70 3 765 405 0 0 0 chr11 23658287 23658332 -98185524 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 765 450 49 0 0 chr11 23658332 23658392 -98185464 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 765 189 0 0 0 chr11 23658398 23658419 -98185437 + (A)n Simple_repeat Simple_repeat 1 21 0 3 765 879 247 0 11 chr11 23658958 23659142 -98184714 + B3A SINE B2 1 182 -16 3 765 186 189 0 0 chr11 23659147 23659184 -98184672 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 765 574 204 77 28 chr11 23659251 23659432 -98184424 + L1MA6 LINE L1 6108 6297 -3 3 765 271 333 111 0 chr11 23659579 23659687 -98184169 - PB1 SINE Alu -7 120 1 3 765 356 281 60 34 chr11 23659701 23659835 -98184021 - B1_Mur1 SINE Alu 0 149 6 3 765 281 268 13 78 chr11 23659860 23659880 -98183976 + B4A SINE B4 72 86 -206 3 765 338 310 29 38 chr11 23659880 23659986 -98183870 + B1F2 SINE Alu 1 116 -1 3 765 24 100 0 0 chr11 23659990 23660070 -98183786 + AT_rich Low_complexity Low_complexity 1 80 0 3 765 291 300 0 12 chr11 23660116 23660197 -98183659 + ID4 SINE ID 3 82 -1 3 765 688 137 127 16 chr11 23660834 23660960 -98182896 + B1_Mus1 SINE Alu 2 141 -7 3 765 22 0 0 0 chr11 23661217 23661239 -98182617 + AT_rich Low_complexity Low_complexity 1 22 0 3 765 271 168 74 21 chr11 23661842 23661940 -98181916 + L1ME2z LINE L1 5870 5979 -200 3 765 623 167 10 0 chr11 23662004 23662106 -98181750 + B1_Mur1 SINE Alu 47 149 0 3 765 30 27 0 0 chr11 23662110 23662147 -98181709 + AT_rich Low_complexity Low_complexity 1 37 0 3 765 219 312 94 0 chr11 23662443 23662507 -98181349 - B1_Mur2 SINE Alu -56 93 24 3 765 192 77 0 0 chr11 23663084 23663110 -98180746 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 3 765 297 128 0 0 chr11 23663157 23663204 -98180652 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 765 288 312 53 35 chr11 23663247 23663360 -98180496 - MER44D DNA MER2_type -590 115 1 3 765 788 279 25 5 chr11 23663486 23663688 -98180168 + B4A SINE B4 1 206 -86 3 765 372 22 0 0 chr11 23663905 23663950 -98179906 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 765 866 131 20 7 chr11 23664492 23664638 -98179218 + B1_Mus1 SINE Alu 1 148 0 3 765 240 35 0 0 chr11 23664794 23664823 -98179033 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 765 881 255 39 0 chr11 23664874 23665082 -98178774 - ID_B1 SINE B4 0 224 9 3 765 426 272 127 8 chr11 23665082 23665208 -98178648 - ID_B1 SINE B4 -6 218 78 3 765 30 0 0 0 chr11 23665793 23665823 -98178033 + AT_rich Low_complexity Low_complexity 1 30 0 3 765 23 54 0 0 chr11 23665966 23666003 -98177853 + AT_rich Low_complexity Low_complexity 1 37 0 3 765 647 207 43 0 chr11 23666296 23666436 -98177420 - B1_Mur1 SINE Alu 0 149 4 3 765 270 0 0 0 chr11 23667108 23667138 -98176718 + (CCAA)n Simple_repeat Simple_repeat 4 33 0 3 765 1687 31 0 0 chr11 23667599 23667790 -98176066 + B2_Mm1a SINE B2 2 192 -1 3 765 273 243 36 64 chr11 23669163 23669273 -98174583 - BC1_Mm scRNA scRNA -41 111 5 3 765 417 171 0 0 chr11 23670747 23670835 -98173021 + (CAGT)n Simple_repeat Simple_repeat 1 88 0 3 765 30 59 0 0 chr11 23671090 23671141 -98172715 + GC_rich Low_complexity Low_complexity 1 51 0 3 765 214 167 62 0 chr11 23671898 23671946 -98171910 + PB1D10 SINE Alu 13 63 -54 3 765 536 256 108 0 chr11 23672055 23672184 -98171672 + RSINE1 SINE B4 4 146 -19 3 765 597 211 16 16 chr11 23672726 23672851 -98171005 + ID_B1 SINE B4 92 216 -8 3 765 285 288 8 2 chr11 23673251 23673355 -98170501 + PB1D10 SINE Alu 1 107 -13 3 765 184 331 175 0 chr11 23673371 23673531 -98170325 - L2 LINE L2 -1404 2015 1828 3 765 1509 157 139 18 chr11 23673691 23674022 -98169834 - ORR1D1 LTR MaLR -3 371 1 3 765 389 309 32 0 chr11 23675007 23675101 -98168755 + PB1D7 SINE Alu 4 100 -20 3 765 1212 151 21 80 chr11 23675362 23675600 -98168256 - URR1A DNA MER1_type 0 226 3 3 765 355 235 174 0 chr11 23675675 23675773 -98168083 - B4A SINE B4 -173 119 5 3 765 541 296 17 44 chr11 23675901 23676081 -98167775 + RMER30 DNA MER1_type 8 182 -20 4 765 250 182 0 0 chr11 23676497 23676541 -98167315 + L1M5 LINE L1 4507 4550 -1596 4 765 456 232 40 0 chr11 23676712 23676811 -98167045 + B1F SINE Alu 37 139 -10 4 765 494 274 123 0 chr11 23676901 23677047 -98166809 - U1 snRNA snRNA -1 164 1 4 765 198 103 0 0 chr11 23677454 23677483 -98166373 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 765 962 74 40 0 chr11 23677574 23677729 -98166127 + B2_Mm2 SINE B2 2 172 -44 4 765 579 222 39 13 chr11 23677728 23677883 -98165973 - RCHARR1 DNA MER1_type -329 645 487 4 765 339 150 0 0 chr11 23677886 23677946 -98165910 + (GGA)n Simple_repeat Simple_repeat 3 62 0 4 765 560 116 11 0 chr11 23677947 23678042 -98165814 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 4 765 525 265 118 61 chr11 23678081 23678394 -98165462 - RCHARR1 DNA MER1_type -603 371 41 4 765 859 139 21 0 chr11 23679471 23679615 -98164241 - B1_Mus1 SINE Alu -1 147 1 4 765 228 35 0 0 chr11 23680158 23680187 -98163669 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 765 271 308 39 0 chr11 23680187 23680265 -98163591 - PB1D10 SINE Alu -12 105 25 4 765 291 245 40 20 chr11 23680884 23680984 -98162872 + MYSERV-int LTR ERVK 6449 6550 0 4 765 711 233 83 39 chr11 23681004 23681283 -98162573 + RLTR12B LTR ERVK 39 341 -227 4 765 270 180 0 0 chr11 23681295 23681356 -98162500 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 4 765 481 277 37 30 chr11 23681753 23681887 -98161969 - ID_B1 SINE B4 -2 222 88 4 765 466 267 86 29 chr11 23681915 23682054 -98161802 + B1F SINE Alu 2 148 -1 4 765 351 356 13 26 chr11 23682449 23682602 -98161254 + MLT1G LTR MaLR 10 160 -431 4 765 613 225 71 14 chr11 23682796 23682936 -98160920 - B1_Mur1 SINE Alu -1 148 1 4 765 25 0 0 0 chr11 23683112 23683137 -98160719 + AT_rich Low_complexity Low_complexity 1 25 0 4 765 256 160 0 20 chr11 23683793 23683844 -98160012 + MLT1G LTR MaLR 263 312 -267 4 765 1084 36 0 0 chr11 23683955 23684094 -98159762 - B1_Mus2 SINE Alu -1 146 8 4 765 692 315 36 61 chr11 23684117 23684476 -98159380 + ORR1E LTR MaLR 6 355 -4 4 765 346 245 8 100 chr11 23684481 23684636 -98159220 + MLT1G LTR MaLR 407 537 -11 4 765 463 281 23 8 chr11 23685220 23685349 -98158507 + RSINE1 SINE B4 4 134 -31 4 765 381 280 16 54 chr11 23685452 23685637 -98158219 + L1MB8 LINE L1 5930 6107 -71 4 765 369 0 0 0 chr11 23686780 23686821 -98157035 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 765 290 319 175 9 chr11 23688067 23688181 -98155675 + ID_B1 SINE B4 84 216 -8 4 765 695 247 78 0 chr11 23688546 23688712 -98155144 + B3A SINE B2 2 180 -18 4 765 3202 61 0 10 chr11 23689080 23689480 -98154376 + MTA_Mm LTR MaLR 1 396 0 4 765 227 200 0 0 chr11 23689716 23689761 -98154095 - RMER21B LTR ERV1 -277 565 521 4 765 255 146 0 0 chr11 23689779 23689834 -98154022 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 765 912 254 67 26 chr11 23689963 23690389 -98153467 - RodERV21-int LTR ERV1 -4376 615 16 4 765 319 238 0 56 chr11 23691072 23691161 -98152695 + MTEa LTR MaLR 3 86 -293 4 765 198 0 0 0 chr11 23691263 23691285 -98152571 + (CTG)n Simple_repeat Simple_repeat 2 23 0 4 765 1062 227 112 58 chr11 23691493 23691769 -98152087 + B4 SINE B4 1 291 -1 4 765 186 167 0 0 chr11 23691822 23691858 -98151998 + GA-rich Low_complexity Low_complexity 2 37 0 4 765 1181 101 6 0 chr11 23691858 23692037 -98151819 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 765 1102 63 25 0 chr11 23692037 23692195 -98151661 + (GAAA)n Simple_repeat Simple_repeat 1 162 0 4 765 1251 227 36 29 chr11 23692831 23693112 -98150744 - MTEa LTR MaLR -83 296 14 4 765 407 270 320 15 chr11 23693189 23693460 -98150396 + MTEb LTR MaLR 18 371 -8 4 765 232 286 57 0 chr11 23693780 23693850 -98150006 - LTR79 LTR ERVL -2 525 452 4 765 498 14 0 40 chr11 23693934 23694008 -98149848 + (TTA)n Simple_repeat Simple_repeat 3 73 0 4 765 349 304 84 44 chr11 23694188 23694391 -98149465 - LTR33 LTR ERVL -15 500 290 4 765 579 216 196 12 chr11 23695249 23695422 -98148434 + L1MB8 LINE L1 5950 6154 -24 4 765 1213 90 90 0 chr11 23695426 23695603 -98148253 - B2_Mm2 SINE B2 -2 193 1 4 765 675 228 6 58 chr11 23695646 23695818 -98148038 - RSINE1 SINE B4 0 165 3 4 765 259 168 16 12 chr11 23695822 23695886 -98147970 - B1F SINE Alu -2 147 56 4 765 531 141 0 0 chr11 23695985 23696077 -98147779 + (CATA)n Simple_repeat Simple_repeat 4 95 0 4 765 1593 270 167 8 chr11 23696136 23696771 -98147085 - Lx8 LINE L1 -167 7306 6571 4 765 390 250 61 43 chr11 23696778 23696941 -98146915 + Kanga1d DNA Tc2 381 546 -63 4 765 299 325 8 0 chr11 23697036 23697156 -98146700 - MLT1N2 LTR MaLR -12 550 430 4 765 257 313 129 20 chr11 23697273 23697374 -98146482 - MLT1N2 LTR MaLR -351 211 100 4 765 431 301 26 0 chr11 23697387 23697500 -98146356 - PB1D10 SINE Alu -1 116 1 4 765 1160 62 7 7 chr11 23697838 23697984 -98145872 + B1_Mus2 SINE Alu 2 147 0 4 765 204 67 0 0 chr11 23697984 23698014 -98145842 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 4 765 928 221 49 5 chr11 23698115 23698320 -98145536 - B3 SINE B2 -2 214 1 4 765 269 333 33 0 chr11 23698320 23698410 -98145446 - PB1D7 SINE Alu -7 113 21 4 765 435 92 0 0 chr11 23698442 23698507 -98145349 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 765 630 301 76 23 chr11 23698507 23698554 -98145302 - B4A SINE B4 -16 276 225 4 765 576 0 0 0 chr11 23698554 23698618 -98145238 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 4 765 630 301 76 23 chr11 23698618 23698832 -98145024 - B4A SINE B4 -68 224 1 4 765 232 343 0 47 chr11 23698931 23699038 -98144818 - MLT1A0 LTR MaLR 0 365 264 4 765 444 263 29 0 chr11 23699199 23699336 -98144520 + L1M2 LINE L1 4671 4811 -1332 4 765 3039 270 98 21 chr11 23699501 23700165 -98143691 + Lx8 LINE L1 6085 6792 -681 4 765 288 0 0 0 chr11 23700165 23700197 -98143659 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 765 3039 270 98 21 chr11 23700197 23700517 -98143339 + Lx8 LINE L1 6793 7143 -330 4 765 209 139 23 0 chr11 23700621 23700664 -98143192 + T-rich Low_complexity Low_complexity 2 45 0 4 765 800 152 87 0 chr11 23700672 23700810 -98143046 - B1_Mur4 SINE Alu 0 150 1 4 765 342 206 0 0 chr11 23700810 23700883 -98142973 + CT-rich Low_complexity Low_complexity 2 74 0 4 765 228 67 0 0 chr11 23700982 23701012 -98142844 + (A)n Simple_repeat Simple_repeat 1 30 0 4 765 610 115 38 13 chr11 23701111 23701269 -98142587 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 765 444 105 0 0 chr11 23701268 23701344 -98142512 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 765 181 269 0 37 chr11 23702056 23702110 -98141746 + L2c LINE L2 3292 3343 -44 4 765 1703 245 105 45 chr11 23702111 23702692 -98141164 - RLTR18 LTR ERVK 0 616 1 4 765 360 0 0 0 chr11 23703763 23703803 -98140053 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 4 765 321 293 190 16 chr11 23703820 23704004 -98139852 - Lx8 LINE L1 0 7473 7258 4 765 630 239 119 5 chr11 23704001 23704203 -98139653 - Lx8 LINE L1 -410 7063 6839 4 765 355 250 77 8 chr11 23704212 23704329 -98139527 - ID_B1 SINE B4 -10 214 90 4 765 313 215 46 0 chr11 23704923 23704988 -98138868 + MER5A DNA MER1_type 4 71 -118 4 765 202 139 23 0 chr11 23706448 23706491 -98137365 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 765 632 134 45 0 chr11 23706647 23706759 -98137097 - B1_Mur2 SINE Alu -3 146 30 4 765 248 194 173 40 chr11 23706698 23706773 -98137083 - 4.5SRNA scRNA scRNA -8 86 2 4 765 552 272 14 7 chr11 23707247 23707395 -98136461 + B1F2 SINE Alu 1 149 0 4 765 841 185 14 0 chr11 23707424 23707570 -98136286 + B1_Mus1 SINE Alu 1 148 0 4 765 901 237 18 28 chr11 23707713 23707930 -98135926 + B3 SINE B2 1 215 -1 4 765 339 130 0 0 chr11 23708476 23708530 -98135326 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 765 802 192 34 34 chr11 23708535 23708740 -98135116 + RMER10B LTR ERVL 194 398 0 4 765 437 316 69 17 chr11 23709041 23709215 -98134641 + MER115 DNA Tip100 5 187 -506 4 765 225 0 0 0 chr11 23709492 23709517 -98134339 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 4 765 1206 102 0 0 chr11 23709519 23709695 -98134161 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 4 765 4405 63 4 0 chr11 23709899 23710450 -98133406 - L1_Mus1 LINE L1 0 6567 6015 4 765 180 0 0 0 chr11 23711125 23711145 -98132711 + (CCCTAA)n Simple_repeat Simple_repeat 5 24 0 4 765 415 370 52 13 chr11 23711534 23711620 -98132236 - B4A SINE B4 -2 290 201 4 765 336 83 0 0 chr11 23711620 23711668 -98132188 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 765 415 370 52 13 chr11 23711668 23711814 -98132042 - B4A SINE B4 -92 200 49 4 765 967 238 5 5 chr11 23711845 23712060 -98131796 - B4 SINE B4 -66 226 12 4 765 377 260 191 13 chr11 23712069 23712221 -98131635 - ID_B1 SINE B4 -1 223 45 4 765 582 284 90 0 chr11 23712240 23712441 -98131415 - ID_B1 SINE B4 -5 219 1 4 765 2174 166 38 44 chr11 23713175 23713267 -98130589 + Lx3_Mus LINE L1 869 953 -6133 4 765 1647 21 11 0 chr11 23713267 23713454 -98130402 + B2_Mm1a SINE B2 2 190 -3 4 765 2174 143 68 21 chr11 23713454 23713975 -98129881 + Lx3_Mus LINE L1 954 1500 -4377 4 765 14942 68 12 6 chr11 23713975 23714862 -98128994 + Lx3_Mus LINE L1 3916 4801 -1085 4 765 288 0 0 0 chr11 23714862 23714894 -98128962 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 765 14942 73 32 9 chr11 23714894 23717037 -98126819 + Lx3_Mus LINE L1 4802 7009 0 4 765 258 268 0 0 chr11 23717079 23717135 -98126721 + (ATG)n Simple_repeat Simple_repeat 3 58 0 4 765 213 175 0 0 chr11 23717137 23717177 -98126679 + GA-rich Low_complexity Low_complexity 2 41 0 4 765 7642 156 28 14 chr11 23717177 23718539 -98125317 + L1_Mur2 LINE L1 1500 2864 -3013 4 765 681 13 0 0 chr11 23718539 23718617 -98125239 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 4 765 7642 156 28 14 chr11 23718617 23718678 -98125178 + L1_Mur2 LINE L1 2865 2942 -2935 4 765 189 414 121 0 chr11 23718883 23719057 -98124799 + L4 LINE RTE 965 1159 -870 4 765 207 0 0 0 chr11 23719488 23719511 -98124345 + (T)n Simple_repeat Simple_repeat 1 23 0 5 765 1249 27 0 0 chr11 23719511 23719657 -98124199 - B1_Mm SINE Alu 0 147 2 5 765 254 304 100 14 chr11 23719676 23719816 -98124040 - MER34 LTR ERV1 -350 192 41 5 765 214 254 15 73 chr11 23719868 23719936 -98123920 + RSINE1 SINE B4 6 69 -96 5 765 231 125 0 0 chr11 23720021 23720061 -98123795 + (CCA)n Simple_repeat Simple_repeat 1 40 0 5 765 1373 86 32 0 chr11 23720129 23720316 -98123540 - B2_Mm2 SINE B2 0 195 3 5 765 279 203 15 59 chr11 23720439 23720507 -98123349 + RSINE1 SINE B4 84 148 -17 5 765 201 241 0 0 chr11 23720521 23720575 -98123281 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 765 425 316 17 0 chr11 23722012 23722129 -98121727 + MER20 DNA MER1_type 93 211 -8 5 765 222 118 0 0 chr11 23723551 23723585 -98120271 + (GGAGAA)n Simple_repeat Simple_repeat 3 36 0 5 95 1758 26 5 0 chr11 23723908 23724100 -98119756 + B2_Mm1t SINE B2 1 193 0 5 766 30338 105 22 27 chr11 23724635 23728661 -98115195 + L1_Mus3 LINE L1 406 4425 -1458 5 766 1252 68 0 7 chr11 23728661 23728809 -98115047 + B1_Mus2 SINE Alu 1 147 0 5 766 30338 101 21 15 chr11 23728809 23731007 -98112849 + L1_Mus3 LINE L1 4426 6632 -6 5 766 499 244 60 18 chr11 23732093 23732136 -98111720 + MER2 DNA MER2_type 32 75 -270 5 766 3179 71 5 10 chr11 23732136 23732534 -98111322 + MTA_Mm LTR MaLR 1 396 0 5 766 499 244 60 18 chr11 23732534 23732657 -98111199 + MER2 DNA MER2_type 76 204 -141 5 766 519 313 114 0 chr11 23733530 23733741 -98110115 - MER2 DNA MER2_type -110 235 1 5 766 583 266 14 7 chr11 23734104 23734244 -98109612 - B1F SINE Alu -6 143 3 5 766 449 275 153 70 chr11 23734277 23734492 -98109364 + MLT1J LTR MaLR 42 274 -238 5 766 1905 47 0 8 chr11 23734510 23734747 -98109109 - ORR1A1 LTR MaLR 0 346 112 5 766 39001 29 0 0 chr11 23734747 23741180 -98102676 - L1Md_T LINE L1 0 6585 80 5 766 730 68 171 0 chr11 23741180 23741297 -98102559 - ORR1A1 LTR MaLR -209 137 1 5 766 10274 60 19 8 chr11 23741297 23742699 -98101157 - ORR1A1-int LTR MaLR 0 1963 377 5 766 1082 67 67 0 chr11 23742699 23742834 -98101022 + B1_Mm SINE Alu 4 147 0 5 766 9836 116 109 72 chr11 23742834 23743324 -98100532 - ORR1A1-int LTR MaLR -1583 380 1 5 766 2811 37 52 3 chr11 23743324 23743650 -98100206 - ORR1A1 LTR MaLR 0 346 5 5 766 681 53 0 0 chr11 23744103 23744197 -98099659 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 5 766 373 218 17 151 chr11 23744210 23744329 -98099527 - B1F SINE Alu -1 148 46 5 766 233 70 47 0 chr11 23744938 23744981 -98098875 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 766 630 207 0 21 chr11 23744999 23745288 -98098568 + (TG)n Simple_repeat Simple_repeat 1 282 0 5 766 237 239 56 14 chr11 23748352 23748424 -98095432 + ID4_ SINE ID 8 82 -1 5 766 8138 83 11 11 chr11 23749513 23751134 -98092722 - L1_Mus3 LINE L1 0 6638 5012 5 766 2137 131 138 10 chr11 23751134 23751526 -98092330 + RLTR44B LTR ERVK 8 449 0 5 766 7386 102 14 28 chr11 23751542 23752656 -98091200 - L1_Mus3 LINE L1 -872 5011 3914 5 766 602 282 148 13 chr11 23752884 23753114 -98090742 - MLT1F2 LTR MaLR -295 265 5 5 766 272 314 0 34 chr11 23753445 23753534 -98090322 - ID2 SINE ID -60 92 7 5 766 381 260 102 122 chr11 23754222 23754348 -98089508 - MamGypLTR1c LTR Gypsy -4 799 654 5 766 934 245 152 139 chr11 23754348 23754722 -98089134 - MTEb LTR MaLR 0 379 1 5 766 381 260 102 122 chr11 23754722 23754849 -98089007 - MamGypLTR1c LTR Gypsy -150 653 551 5 766 216 221 28 56 chr11 23755898 23755970 -98087886 - L3 LINE CR1 -357 4132 4063 5 766 343 265 119 49 chr11 23757682 23757713 -98086143 - B2_Mm1t SINE B2 -40 153 1 5 766 380 294 116 27 chr11 23757713 23757825 -98086031 - B4A SINE B4 -170 122 1 5 766 686 169 60 6 chr11 23757831 23757998 -98085858 + RCHARR1 DNA MER1_type 733 908 -66 5 766 422 235 35 0 chr11 23758002 23758087 -98085769 - PB1D10 SINE Alu -11 106 19 5 766 478 152 25 32 chr11 23758322 23758432 -98085424 + B1_Mur4 SINE Alu 19 150 0 5 766 189 244 111 0 chr11 23758981 23759026 -98084830 + MIR SINE MIR 93 142 -66 5 766 249 31 25 0 chr11 23759140 23759184 -98084672 - B2_Mm1t SINE B2 -149 49 2 5 766 797 211 172 0 chr11 23759360 23759540 -98084316 - ID_B1 SINE B4 -11 213 3 5 766 378 309 88 6 chr11 23759836 23760018 -98083838 + LTR82A LTR ERVL 560 756 -116 5 766 919 238 10 31 chr11 23760353 23760548 -98083308 + B3A SINE B2 1 191 -7 5 766 338 253 113 21 chr11 23761202 23761299 -98082557 - Charlie4z DNA MER1_type -13 154 49 5 766 180 97 0 0 chr11 23763583 23763614 -98080242 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 766 280 243 68 0 chr11 23764514 23764588 -98079268 + ID4 SINE ID 4 82 -1 5 766 1378 82 48 11 chr11 23765239 23765425 -98078431 - B2_Mm2 SINE B2 -2 193 1 5 766 4367 64 7 17 chr11 23765588 23766128 -98077728 - L1_Mus1 LINE L1 0 6567 6033 5 766 450 266 0 11 chr11 23766248 23766343 -98077513 - PB1D7 SINE Alu 0 120 27 5 766 189 0 0 0 chr11 23767145 23767166 -98076690 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 5 766 423 0 0 0 chr11 23768813 23768860 -98074996 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 766 201 74 0 0 chr11 23769894 23769921 -98073935 + (A)n Simple_repeat Simple_repeat 1 27 0 5 766 187 54 54 0 chr11 23770575 23770612 -98073244 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 5 766 21 0 0 0 chr11 23770702 23770723 -98073133 + AT_rich Low_complexity Low_complexity 1 21 0 5 766 437 316 31 19 chr11 23771010 23771171 -98072685 + RSINE1 SINE B4 3 165 0 5 766 612 235 61 0 chr11 23772820 23772952 -98070904 + B1F SINE Alu 9 148 -1 5 766 654 255 45 25 chr11 23772956 23773113 -98070743 + RSINE1 SINE B4 2 161 -4 5 766 963 100 0 7 chr11 23773503 23773644 -98070212 - B2_Mm2 SINE B2 -3 192 53 5 766 1274 184 46 6 chr11 23774997 23775253 -98068603 + Lx5 LINE L1 6735 7053 -5 5 766 702 225 75 6 chr11 23775263 23775424 -98068432 + B3 SINE B2 45 216 0 5 766 379 274 65 19 chr11 23775447 23775555 -98068301 + PB1D7 SINE Alu 1 113 -7 5 766 1059 248 143 16 chr11 23775601 23776027 -98067829 + L1MA6 LINE L1 5821 6300 0 5 766 294 266 192 8 chr11 23776119 23776244 -98067612 - B1F SINE Alu -1 148 1 5 766 1141 248 66 26 chr11 23777288 23777743 -98066113 - L1MB8 LINE L1 -31 6153 5692 5 766 3901 73 22 0 chr11 23777743 23778248 -98065608 - Lx3_Mus LINE L1 0 7009 6494 5 766 201 176 19 38 chr11 23778462 23778515 -98065341 + A-rich Low_complexity Low_complexity 4 55 0 5 766 298 280 170 0 chr11 23778639 23778739 -98065117 - PB1D10 SINE Alu 0 117 1 5 766 30 27 0 0 chr11 23778755 23778792 -98065064 + AT_rich Low_complexity Low_complexity 1 37 0 5 766 693 306 83 36 chr11 23779264 23779542 -98064314 - B4A SINE B4 0 292 2 5 766 262 313 0 0 chr11 23779639 23779722 -98064134 + (CATA)n Simple_repeat Simple_repeat 2 84 0 5 766 256 324 69 69 chr11 23780151 23780167 -98063689 + B4A SINE B4 77 92 -200 5 766 557 211 9 18 chr11 23780167 23780278 -98063578 + B1_Mus2 SINE Alu 1 110 -37 5 766 423 0 0 0 chr11 23780283 23780330 -98063526 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 5 766 348 302 84 47 chr11 23780380 23780571 -98063285 + Charlie1a DNA MER1_type 62 259 -1196 5 766 852 285 57 39 chr11 23780588 23780994 -98062862 + Charlie1a DNA MER1_type 429 841 -614 5 766 457 249 107 0 chr11 23781194 23781363 -98062493 + Charlie1a DNA MER1_type 1267 1453 -2 5 766 249 297 16 0 chr11 23781447 23781511 -98062345 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 5 766 2584 171 73 32 chr11 23781582 23782119 -98061737 + RLTR20B2 LTR ERVK 1 559 -1 5 766 233 263 98 98 chr11 23782470 23782664 -98061192 + HAL1 LINE L1 11 204 -2303 5 766 21 0 0 0 chr11 23782876 23782897 -98060959 + AT_rich Low_complexity Low_complexity 1 21 0 5 766 251 300 113 45 chr11 23782911 23783291 -98060565 + HAL1 LINE L1 1212 1617 -890 5 766 437 257 159 0 chr11 23784307 23784420 -98059436 + ID_B1 SINE B4 76 206 -18 5 766 24 0 0 0 chr11 23784433 23784457 -98059399 + AT_rich Low_complexity Low_complexity 1 24 0 5 766 590 283 177 25 chr11 23784472 23784715 -98059141 + B4 SINE B4 9 288 -4 5 766 223 282 101 55 chr11 23784939 23785048 -98058808 - MIR SINE MIR -55 153 40 5 766 22 70 0 0 chr11 23785274 23785317 -98058539 + AT_rich Low_complexity Low_complexity 1 43 0 5 766 231 114 0 0 chr11 23785961 23785996 -98057860 + (TTC)n Simple_repeat Simple_repeat 2 36 0 5 766 1223 48 0 0 chr11 23785997 23786144 -98057712 - B1_Mm SINE Alu 0 147 1 5 766 371 274 195 31 chr11 23786295 23786423 -98057433 - ID_B1 SINE B4 0 224 76 5 766 867 197 79 45 chr11 23786808 23787010 -98056846 - B3 SINE B2 0 216 8 5 766 463 200 9 71 chr11 23787157 23787270 -98056586 - B4A SINE B4 -1 291 186 5 766 515 78 0 13 chr11 23787302 23787380 -98056476 + (CCTA)n Simple_repeat Simple_repeat 1 77 0 5 766 586 229 49 14 chr11 23787389 23787531 -98056325 - B1_Mur3 SINE Alu -1 148 2 5 766 390 281 0 0 chr11 23787543 23787625 -98056231 - B4A SINE B4 -206 86 5 5 766 578 184 40 66 chr11 23787934 23788085 -98055771 + B1_Mur2 SINE Alu 2 148 -1 5 766 1575 32 16 0 chr11 23788089 23788277 -98055579 + B2_Mm1a SINE B2 1 191 -2 5 766 473 292 64 98 chr11 23790463 23790729 -98053127 + Charlie19a DNA Charlie 42 298 -88 5 766 583 278 195 35 chr11 23790796 23791288 -98052568 + L2 LINE L2 2429 2999 -420 5 766 1199 48 0 0 chr11 23791348 23791494 -98052362 + B1_Mus2 SINE Alu 2 147 0 5 766 390 234 53 11 chr11 23792848 23792943 -98050913 + PB1D10 SINE Alu 14 112 -5 5 766 461 195 203 0 chr11 23792975 23793093 -98050763 - B1_Mur2 SINE Alu -7 142 1 5 766 269 292 97 0 chr11 23793314 23793386 -98050470 + ID4_ SINE ID 1 79 -4 5 766 252 86 0 0 chr11 23793703 23793738 -98050118 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 766 199 376 58 39 chr11 23796178 23796333 -98047523 - L2b LINE L2 -88 3287 3130 5 766 487 266 8 39 chr11 23796550 23796679 -98047177 - RSINE1 SINE B4 -39 126 2 5 766 246 348 104 0 chr11 23797021 23797136 -98046720 + MER2 DNA MER2_type 2 128 -217 6 766 486 223 107 0 chr11 23797147 23797250 -98046606 - B1_Mur2 SINE Alu 0 149 36 6 766 235 276 22 54 chr11 23797170 23797262 -98046594 - RLTR25B LTR ERVK -516 512 424 6 766 757 271 15 36 chr11 23797269 23797464 -98046392 + MER2 DNA MER2_type 155 345 0 6 766 501 251 108 24 chr11 23797641 23797808 -98046048 - B3A SINE B2 -16 182 2 6 766 24 96 0 0 chr11 23797810 23797883 -98045973 + AT_rich Low_complexity Low_complexity 1 73 0 6 766 217 271 151 41 chr11 23797892 23797965 -98045891 - RSINE1 SINE B4 -32 133 53 6 766 26 0 0 0 chr11 23798089 23798115 -98045741 + AT_rich Low_complexity Low_complexity 1 26 0 6 766 544 301 38 0 chr11 23798129 23798262 -98045594 + ID_B1 SINE B4 87 224 0 6 766 189 0 0 0 chr11 23798262 23798283 -98045573 + (CAAAAA)n Simple_repeat Simple_repeat 5 25 0 6 766 808 178 13 20 chr11 23798930 23799100 -98044756 - ORR1B2 LTR MaLR -211 156 1 6 766 2221 198 107 62 chr11 23799288 23800126 -98043730 + RMER6C LTR ERVK 1 720 0 6 766 399 361 131 16 chr11 23800359 23800725 -98043131 + L1M5 LINE L1 3790 4197 -1949 6 766 1125 62 7 0 chr11 23800786 23800931 -98042925 + B1_Mus2 SINE Alu 2 147 0 6 766 222 62 0 0 chr11 23800931 23800963 -98042893 + (A)n Simple_repeat Simple_repeat 1 32 0 6 766 1279 257 161 2 chr11 23801120 23801580 -98042276 - MT2A LTR ERVL 0 533 1 6 766 227 268 218 11 chr11 23801584 23801671 -98042185 + PB1D7 SINE Alu 16 120 0 6 766 616 282 63 63 chr11 23801699 23801773 -98042083 + L1MC4 LINE L1 7317 7386 -656 6 766 330 321 45 9 chr11 23801773 23801883 -98041973 + PB1D10 SINE Alu 1 114 -3 6 766 616 282 63 63 chr11 23801883 23802126 -98041730 + L1MC4 LINE L1 7387 7634 -408 6 766 225 314 57 29 chr11 23802128 23802233 -98041623 + MER21B LTR ERV1 1 108 -755 6 766 756 116 0 0 chr11 23802299 23802411 -98041445 - URR1B DNA MER1_type -4 221 110 6 766 189 0 0 0 chr11 23802508 23802529 -98041327 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 766 261 0 0 0 chr11 23802529 23802557 -98041299 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 766 866 232 287 58 chr11 23802557 23802951 -98040905 - MT2B LTR ERVL -117 484 1 6 766 682 244 176 10 chr11 23802957 23803156 -98040700 + MER21B LTR ERV1 463 694 -169 6 766 352 291 8 86 chr11 23803569 23803697 -98040159 + ORR1E LTR MaLR 79 196 -163 6 766 337 288 90 24 chr11 23804330 23804497 -98039359 + L1ME3B LINE L1 5777 5954 -286 6 766 981 108 0 7 chr11 23804533 23804673 -98039183 + B1_Mus1 SINE Alu 10 148 0 6 766 189 171 0 0 chr11 23804675 23804710 -98039146 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 766 943 245 0 10 chr11 23804711 23804909 -98038947 - B3 SINE B2 -3 213 18 6 766 231 0 0 0 chr11 23805148 23805175 -98038681 - MT2_Mm LTR ERVL 0 493 467 6 766 364 347 40 0 chr11 23805175 23805325 -98038531 - RSINE1 SINE B4 -8 157 2 6 766 274 277 0 82 chr11 23805330 23805440 -98038416 - B1_Mm SINE Alu 0 147 47 6 766 274 322 40 63 chr11 23805386 23805512 -98038344 - ID_B1 SINE B4 -24 200 78 6 766 793 149 31 179 chr11 23805640 23805836 -98038020 + MT2A LTR ERVL 1 167 -366 6 766 1300 191 62 7 chr11 23805836 23806126 -98037730 + Lx9 LINE L1 7002 7307 -337 6 766 280 143 0 0 chr11 23806114 23806163 -98037693 + L1_Mur2 LINE L1 5308 5356 -521 6 766 4517 181 30 10 chr11 23806163 23806959 -98036897 + Lx5 LINE L1 6238 7049 -1 6 766 314 154 19 0 chr11 23806972 23807024 -98036832 - MT2A LTR ERVL -324 209 157 6 766 440 222 0 80 chr11 23807024 23807161 -98036695 - Lx9 LINE L1 -55 7589 7464 6 766 375 202 0 0 chr11 23807170 23807249 -98036607 + (CATA)n Simple_repeat Simple_repeat 2 80 0 6 766 1326 102 9 9 chr11 23807249 23807467 -98036389 - Lx9 LINE L1 -127 7517 7300 6 766 4175 123 12 6 chr11 23807465 23808157 -98035699 - L1_Mur2 LINE L1 -995 4882 4187 6 766 231 36 0 0 chr11 23808172 23808200 -98035656 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 766 204 67 0 0 chr11 23808429 23808459 -98035397 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 766 1130 95 0 0 chr11 23808469 23808617 -98035239 - B1_Mus1 SINE Alu 0 148 1 6 766 652 239 0 23 chr11 23808811 23808944 -98034912 + RSINE1 SINE B4 36 165 0 6 766 350 277 137 10 chr11 23809028 23809130 -98034726 - RSINE1 SINE B4 -31 134 20 6 766 419 253 152 4 chr11 23809577 23809829 -98034027 + L1M3 LINE L1 4126 4442 -1698 6 766 488 267 74 35 chr11 23809989 23810211 -98033645 - L1M4 LINE L1 -2444 3702 3471 6 766 3424 96 141 0 chr11 23810211 23810723 -98033133 - MT2B2 LTR ERVL 0 584 1 6 766 488 260 75 117 chr11 23810723 23810814 -98033042 - L1M4 LINE L1 -2675 3471 3409 6 766 1129 96 0 17 chr11 23810814 23810994 -98032862 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 6 766 739 221 14 0 chr11 23810998 23811138 -98032718 - B1_Mur2 SINE Alu -6 143 2 6 766 399 260 75 117 chr11 23811138 23811465 -98032391 - L1M4 LINE L1 -2733 3413 3083 6 766 748 233 79 26 chr11 23811691 23811920 -98031936 - Lx8 LINE L1 -363 7110 6870 6 766 1742 123 44 7 chr11 23811909 23812203 -98031653 + Lx2 LINE L1 6273 6577 -420 6 766 853 45 0 0 chr11 23813114 23813226 -98030630 + L1_Mus1 LINE L1 6456 6567 0 6 766 226 140 17 34 chr11 23813246 23813305 -98030551 + (TTTG)n Simple_repeat Simple_repeat 3 60 0 6 766 651 179 104 7 chr11 23813305 23813440 -98030416 - B1_Mur3 SINE Alu 0 149 2 6 766 341 270 22 11 chr11 23813444 23813534 -98030322 + MLT2B3 LTR ERVL 19 109 -445 6 766 245 333 0 91 chr11 23813445 23813544 -98030312 + MTEa LTR MaLR 20 109 -270 6 766 9341 72 22 22 chr11 23814794 23816488 -98027368 - Lx3_Mus LINE L1 0 7009 5337 6 766 1297 248 73 58 chr11 23816650 23817113 -98026743 - RMER1C Other Other -8 1334 865 6 766 568 265 116 26 chr11 23817126 23817393 -98026463 - RLTR15 LTR ERVK -20 339 49 6 766 426 280 16 16 chr11 23817476 23817603 -98026253 - RMER1C Other Other -689 653 527 6 766 262 259 71 0 chr11 23817638 23817723 -98026133 - RMER1C Other Other -1201 141 51 6 766 462 143 0 0 chr11 23818447 23818524 -98025332 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 766 233 216 0 11 chr11 23818576 23818665 -98025191 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 766 2047 145 3 0 chr11 23818840 23819157 -98024699 + ORR1A3 LTR MaLR 1 318 -8 6 766 1404 148 13 13 chr11 23819219 23819452 -98024404 + RLTR14 LTR ERV1 3 235 -147 6 766 1541 115 29 4 chr11 23819452 23819696 -98024160 + RLTR14-int LTR ERV1 2834 3083 -2234 6 766 2219 134 119 0 chr11 23819703 23820097 -98023759 + RMER4B LTR ERVK 1 441 -144 6 766 1057 178 26 34 chr11 23820169 23820402 -98023454 + RLTR14-int LTR ERV1 3203 3433 -1884 6 766 33290 59 9 0 chr11 23820404 23825668 -98018188 + L1Md_F2 LINE L1 273 5585 -298 6 766 8068 44 1 5 chr11 23825669 23826668 -98017188 + L1Md_F2 LINE L1 5587 6581 -1 6 766 3487 190 88 61 chr11 23826678 23826713 -98017143 + RLTR14-int LTR ERV1 3418 3452 -1865 6 766 1138 90 0 0 chr11 23826713 23826858 -98016998 + B1_Mus2 SINE Alu 2 146 -1 6 766 3487 190 148 55 chr11 23826858 23827820 -98016036 + RLTR14-int LTR ERV1 3453 4505 -812 6 766 1855 116 12 59 chr11 23828058 23828396 -98015460 - RLTRETN_Mm LTR ERVK 0 322 1 6 766 342 206 53 45 chr11 23828920 23829052 -98014804 - L1M3 LINE L1 -1821 4319 4187 6 766 1313 232 122 49 chr11 23829039 23829284 -98014572 + L1M3 LINE L1 4626 4852 -1288 6 766 2550 115 36 64 chr11 23829284 23829547 -98014309 - RMER6B LTR ERVK -2 459 202 6 766 1180 68 0 0 chr11 23829547 23829694 -98014162 + B1_Mm SINE Alu 1 147 0 6 766 180 0 0 0 chr11 23829695 23829715 -98014141 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 766 2550 115 36 64 chr11 23829715 23829921 -98013935 - RMER6B LTR ERVK -260 201 1 6 766 1313 232 122 49 chr11 23829921 23830346 -98013510 + L1M3 LINE L1 4853 5343 -797 6 766 15138 93 22 2 chr11 23830412 23832766 -98011090 - L1_Mm LINE L1 -2233 3650 1252 6 766 492 216 0 0 chr11 23832763 23832865 -98010991 - L1VL4 LINE L1 -6012 290 189 6 766 4916 151 52 3 chr11 23832862 23833747 -98010109 - L1_Mur3 LINE L1 -1774 4106 3179 6 766 189 0 0 0 chr11 23834077 23834098 -98009758 + (A)n Simple_repeat Simple_repeat 1 21 0 6 766 371 91 0 0 chr11 23834098 23834153 -98009703 + ORR1C2 LTR MaLR 330 384 0 6 766 1520 58 5 0 chr11 23834230 23834418 -98009438 + B2_Mm1a SINE B2 1 189 -4 6 766 1463 141 117 88 chr11 23835176 23835519 -98008337 - ORR1B1 LTR MaLR -8 386 34 6 766 5968 188 37 12 chr11 23836148 23836465 -98007391 - Lx5 LINE L1 0 7050 6729 6 766 3221 68 0 2 chr11 23836465 23836862 -98006994 - MTA_Mm LTR MaLR 0 396 1 6 766 5968 188 37 12 chr11 23836862 23836977 -98006879 - Lx5 LINE L1 -322 6728 6614 6 766 198 0 0 0 chr11 23836977 23836999 -98006857 + (CTATT)n Simple_repeat Simple_repeat 1 22 0 6 766 5968 188 37 12 chr11 23836999 23837704 -98006152 - Lx5 LINE L1 -437 6613 5886 6 766 1872 170 6 6 chr11 23837766 23838103 -98005753 - L1_Mur2 LINE L1 -805 5072 4736 6 766 1200 257 49 69 chr11 23838103 23838650 -98005206 + RLTR20B3 LTR ERVK 4 524 -3 6 766 19249 138 33 36 chr11 23838650 23841175 -98002681 - L1_Mur2 LINE L1 -1146 4731 2229 6 766 1308 101 27 0 chr11 23841175 23841363 -98002493 - B2_Mm1t SINE B2 0 193 1 6 766 19249 138 33 36 chr11 23841363 23841549 -98002307 - L1_Mur2 LINE L1 -3649 2228 2039 6 766 423 0 0 0 chr11 23841549 23841596 -98002260 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 766 19249 163 62 43 chr11 23841596 23842943 -98000913 - L1_Mur2 LINE L1 -3839 2038 649 6 766 761 210 0 7 chr11 23843064 23843200 -98000656 + B1_Mur2 SINE Alu 1 136 -13 6 766 306 0 0 0 chr11 23843200 23843234 -98000622 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 6 766 21 36 0 0 chr11 23843408 23843436 -98000420 + AT_rich Low_complexity Low_complexity 1 28 0 6 766 1875 216 117 33 chr11 23843704 23844164 -97999692 + RLTR19 LTR ERVK 1 499 0 6 766 1512 205 33 48 chr11 23844791 23845124 -97998732 + ORR1B2 LTR MaLR 1 328 -39 6 766 882 60 29 29 chr11 23845144 23845281 -97998575 + B1_Mus1 SINE Alu 6 142 -6 6 766 259 136 0 0 chr11 23845288 23845332 -97998524 + ORR1B2 LTR MaLR 343 386 -8 6 766 1059 242 189 47 chr11 23845549 23846021 -97997835 + RLTR20A1 LTR ERVK 1 539 -12 6 766 1644 207 79 21 chr11 23847080 23847563 -97996293 + ETnERV2-int LTR ERVK 1 372 -1954 6 766 2290 157 88 51 chr11 23847579 23848069 -97995787 + ETnERV2-int LTR ERVK 433 940 -1386 6 766 2524 120 39 22 chr11 23848060 23848519 -97995337 + ETnERV2-int LTR ERVK 1062 1528 -798 6 766 5303 142 15 7 chr11 23848519 23848733 -97995123 + L1_Mur2 LINE L1 3657 3874 -2003 6 766 3438 30 2 0 chr11 23848733 23849128 -97994728 - MTA_Mm LTR MaLR 0 396 1 6 766 5303 142 15 7 chr11 23849128 23849788 -97994068 + L1_Mur2 LINE L1 3875 4538 -1339 6 766 765 138 8 0 chr11 23849787 23849918 -97993938 + L1_Mur2 LINE L1 4763 4900 -977 6 766 10395 128 19 31 chr11 23849921 23851188 -97992668 + ETnERV2-int LTR ERVK 1669 2919 -4487 6 766 1476 69 0 21 chr11 23851188 23851381 -97992475 + B2_Mm1t SINE B2 1 189 -4 6 766 10395 128 19 31 chr11 23851381 23851833 -97992023 + ETnERV2-int LTR ERVK 2920 3368 -4038 6 766 4815 153 20 31 chr11 23851892 23852771 -97991085 + ETnERV2-int LTR ERVK 4397 5963 -1281 6 766 287 242 30 81 chr11 23852759 23852858 -97990998 + ETnERV3-int LTR ERVK 5302 5395 -413 6 766 1682 134 0 0 chr11 23852858 23853104 -97990752 + ETnERV3-int LTR ERVK 5535 5780 -28 6 766 5438 63 27 12 chr11 23853114 23853890 -97989966 + RLTR13C2 LTR ERVK 1 788 -20 6 767 311 230 180 0 chr11 23855786 23855886 -97987970 + B3A SINE B2 2 119 -79 7 767 315 127 0 0 chr11 23855892 23855955 -97987901 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 7 767 256 290 71 45 chr11 23856263 23856363 -97987493 + PB1D7 SINE Alu 2 107 -13 7 767 198 0 0 0 chr11 23856363 23856385 -97987471 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 767 256 290 71 45 chr11 23856385 23856396 -97987460 + PB1D7 SINE Alu 108 116 -4 7 767 589 195 115 15 chr11 23856531 23856661 -97987195 + B1_Mur2 SINE Alu 2 144 -5 7 767 1267 234 32 99 chr11 23857083 23857487 -97986369 - MTE2b LTR MaLR -2 377 1 7 767 1283 53 0 0 chr11 23858169 23858338 -97985518 + B2_Mm1t SINE B2 2 170 -23 7 767 264 267 21 53 chr11 23858631 23858671 -97985185 - MLT2B2 LTR ERVL -421 94 57 7 767 2592 98 164 2 chr11 23858671 23859129 -97984727 + RLTR47_MM LTR ERV1 1 532 0 7 767 264 267 21 53 chr11 23859129 23859183 -97984673 - MLT2B2 LTR ERVL -459 56 3 7 767 22 0 0 0 chr11 23859192 23859214 -97984642 + AT_rich Low_complexity Low_complexity 1 22 0 7 767 556 269 0 0 chr11 23859226 23859360 -97984496 - B1F SINE Alu -12 137 4 7 767 435 204 11 0 chr11 23859364 23859452 -97984404 + ORR1E LTR MaLR 6 94 -265 7 767 599 149 18 0 chr11 23859448 23859562 -97984294 - ORR1A4-int LTR MaLR -287 1222 1107 7 767 1359 136 5 0 chr11 23859562 23859776 -97984080 - ORR1A4 LTR MaLR 0 329 115 7 767 3663 160 21 11 chr11 23859777 23860340 -97983516 - Lx5 LINE L1 -140 6910 6342 7 767 3074 135 32 10 chr11 23860333 23860833 -97983023 + Lx5 LINE L1 5154 5664 -213 7 767 1197 119 17 0 chr11 23861064 23861240 -97982616 + B2_Mm1t SINE B2 1 179 -14 7 767 340 161 14 0 chr11 23861305 23861370 -97982486 + B2_Mm2 SINE B2 46 116 -82 7 767 4275 113 32 15 chr11 23861374 23861391 -97982465 + MERVL-int LTR ERVL 1024 1042 -4443 7 767 225 0 0 0 chr11 23861391 23861416 -97982440 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 767 4275 113 32 15 chr11 23861416 23862054 -97981802 + MERVL-int LTR ERVL 1043 1690 -3795 7 767 4627 75 50 0 chr11 23862032 23862633 -97981223 + MERVL-int LTR ERVL 1817 2447 -3038 7 767 338 160 99 0 chr11 23862729 23862860 -97980996 + RMER17D LTR ERVK 384 527 -362 7 767 407 251 30 48 chr11 23863185 23863352 -97980504 + RNLTR23 LTR ERVK 479 642 0 7 767 22157 84 14 3 chr11 23863352 23864158 -97979698 + MERVL-int LTR ERVL 2461 3286 -2199 7 767 2541 109 0 29 chr11 23864158 23864537 -97979319 - RLTR9A LTR ERVK 0 368 1 7 767 22157 84 14 3 chr11 23864537 23866596 -97977260 + MERVL-int LTR ERVL 3287 5356 -129 7 767 373 97 65 0 chr11 23866654 23866716 -97977140 + MERVL-int LTR ERVL 5564 5629 -132 7 767 282 178 13 40 chr11 23866716 23866792 -97977064 + ORR1A3-int LTR MaLR 567 640 -1323 7 767 309 26 0 0 chr11 23866792 23866830 -97977026 + MERVL-int LTR ERVL 5448 5485 0 7 767 3582 79 11 2 chr11 23866830 23867301 -97976555 + MT2C_Mm LTR ERVL 1 475 0 7 767 6536 194 44 24 chr11 23867301 23868518 -97975338 + Lx5 LINE L1 5709 6962 -88 7 767 1338 73 0 0 chr11 23868518 23868697 -97975159 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 7 767 6536 194 44 24 chr11 23868697 23868794 -97975062 + Lx5 LINE L1 6963 7050 0 7 767 1582 188 70 23 chr11 23869288 23869674 -97974182 + MTC LTR MaLR 1 404 -17 7 767 404 211 44 0 chr11 23871275 23871365 -97972491 - PB1D7 SINE Alu -12 108 15 7 767 328 338 143 23 chr11 23872159 23872425 -97971431 + MLT1J2 LTR MaLR 1 298 -150 7 767 23 0 0 0 chr11 23872527 23872550 -97971306 + AT_rich Low_complexity Low_complexity 1 23 0 7 767 2777 64 3 0 chr11 23872809 23873154 -97970702 + ORR1A1 LTR MaLR 1 346 0 7 767 548 62 25 0 chr11 23873213 23873293 -97970563 + (GAAAA)n Simple_repeat Simple_repeat 1 82 0 7 767 270 301 61 44 chr11 23874151 23874332 -97969524 - HAL1 LINE L1 -2316 191 8 7 767 420 20 0 0 chr11 23874473 23874522 -97969334 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 7 767 869 28 9 0 chr11 23874582 23874690 -97969166 + (TTCTC)n Simple_repeat Simple_repeat 1 109 0 7 767 212 122 24 0 chr11 23874690 23874731 -97969125 + (TCCCC)n Simple_repeat Simple_repeat 3 44 0 7 767 279 56 0 0 chr11 23874921 23874957 -97968899 - U2 snRNA snRNA -152 36 1 7 767 515 29 14 0 chr11 23879228 23879297 -97964559 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 767 440 317 104 0 chr11 23879741 23879981 -97963875 - MER33 DNA MER1_type -42 282 18 7 767 216 326 52 52 chr11 23881501 23881637 -97962219 - L4 LINE RTE -206 1823 1688 7 767 344 326 0 0 chr11 23882460 23882552 -97961304 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 767 36 62 0 0 chr11 23882552 23882616 -97961240 + AT_rich Low_complexity Low_complexity 1 64 0 7 767 789 287 52 80 chr11 23882665 23882811 -97961045 - L1MA4 LINE L1 -1613 6083 5934 7 767 477 0 0 0 chr11 23882811 23882864 -97960992 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 767 1031 256 13 18 chr11 23882864 23883215 -97960641 - L1MA4 LINE L1 -1763 5933 5633 7 767 593 240 0 0 chr11 23883182 23883303 -97960553 + L1MA4 LINE L1 5527 5647 -653 7 767 1046 199 39 0 chr11 23883392 23883598 -97960258 - ID_B1 SINE B4 -9 215 2 7 767 584 127 97 10 chr11 23883713 23883816 -97960040 + PB1D9 SINE Alu 1 112 -8 7 767 1442 294 152 44 chr11 23883831 23884880 -97958976 - Charlie1a DNA MER1_type -40 1415 253 7 767 277 227 144 22 chr11 23885095 23885185 -97958671 + L1M3 LINE L1 5351 5451 -732 7 767 431 263 202 12 chr11 23885278 23885565 -97958291 + MTEb LTR MaLR 35 379 0 7 767 1334 266 69 21 chr11 23885566 23885999 -97957857 + L1MB7 LINE L1 5465 5918 -266 7 767 300 295 123 8 chr11 23886023 23886153 -97957703 + L1MB7 LINE L1 5974 6118 -60 7 767 242 316 92 31 chr11 23886422 23886618 -97957238 + MamRep605 Unknown Unknown 608 815 -61 7 767 506 252 0 9 chr11 23889013 23889121 -97954735 - PB1D10 SINE Alu -7 110 4 7 767 28 29 0 0 chr11 23889829 23889864 -97953992 + AT_rich Low_complexity Low_complexity 1 35 0 7 767 291 309 37 12 chr11 23889870 23889952 -97953904 - B1F1 SINE Alu -65 84 1 7 767 272 210 113 0 chr11 23890543 23890605 -97953251 - Lx5 LINE L1 -313 6737 6669 7 767 1377 213 85 0 chr11 23890588 23890870 -97952986 + Lx5 LINE L1 6745 7050 0 7 767 304 224 3 131 chr11 23890932 23891046 -97952810 + MLT1A LTR MaLR 32 133 -232 7 767 813 304 121 38 chr11 23891117 23891641 -97952215 - MLT1E1A LTR MaLR -79 545 1 7 767 426 261 41 50 chr11 23892058 23892179 -97951677 - RSINE1 SINE B4 -45 120 1 7 767 213 39 0 0 chr11 23893101 23893127 -97950729 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 767 28 29 0 0 chr11 23894091 23894126 -97949730 + AT_rich Low_complexity Low_complexity 1 35 0 7 767 438 192 28 0 chr11 23894339 23894439 -97949417 - MTEb LTR MaLR 0 370 265 7 767 1712 225 41 14 chr11 23894448 23894817 -97949039 - Lx6 LINE L1 -84 7376 6998 7 767 322 200 0 0 chr11 23894837 23894897 -97948959 + MTEa LTR MaLR 207 266 -113 7 767 214 279 138 72 chr11 23894904 23895149 -97948707 + MIR SINE MIR 14 268 0 7 767 234 239 13 66 chr11 23896974 23897050 -97946806 - MLT1C LTR MaLR -343 124 53 7 767 446 321 128 36 chr11 23897277 23897581 -97946275 + MLT1G1 LTR MaLR 114 445 -134 7 767 512 243 141 35 chr11 23897839 23898118 -97945738 - MER44A DNA MER2_type -4 335 27 7 767 727 299 68 15 chr11 23898118 23898383 -97945473 + B4A SINE B4 2 280 -12 7 767 209 204 0 0 chr11 23898669 23898713 -97945143 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 767 316 246 0 0 chr11 23898728 23898793 -97945063 + RSINE1 SINE B4 84 148 -17 7 767 421 17 17 17 chr11 23898813 23898872 -97944984 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 7 767 659 281 50 16 chr11 23899292 23899534 -97944322 - MER2 DNA MER2_type 0 345 96 7 767 335 227 227 0 chr11 23899771 23899899 -97943957 - L1MA8 LINE L1 -63 6228 6072 7 767 260 71 13 79 chr11 23901224 23901300 -97942556 + A-rich Low_complexity Low_complexity 2 72 0 7 767 23 0 0 0 chr11 23901523 23901546 -97942310 + AT_rich Low_complexity Low_complexity 1 23 0 7 767 406 285 56 172 chr11 23901711 23901954 -97941902 - RMER10A LTR ERVL -19 423 219 7 767 567 0 0 0 chr11 23901954 23902017 -97941839 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 767 406 285 56 172 chr11 23902017 23902239 -97941617 - RMER10A LTR ERVL -224 218 13 7 767 889 193 52 52 chr11 23903331 23903544 -97940312 + B3 SINE B2 1 213 -3 7 767 2767 158 25 71 chr11 23903712 23904264 -97939592 + RLTR11A2 LTR ERVK 1 527 0 7 767 809 291 103 8 chr11 23904751 23905230 -97938626 - MLT1F1 LTR MaLR -7 562 9 7 767 337 267 25 17 chr11 23906472 23906590 -97937266 + Arthur1A DNA Tip100 53 171 -6 7 767 357 24 0 0 chr11 23906925 23906967 -97936889 + (A)n Simple_repeat Simple_repeat 1 42 0 7 767 829 301 44 53 chr11 23907197 23907608 -97936248 + MARNA DNA Mariner 15 421 -165 7 767 1157 75 0 6 chr11 23907725 23907886 -97935970 + L1_Mus1 LINE L1 6408 6567 0 7 767 936 114 11 6 chr11 23907998 23908175 -97935681 + (TG)n Simple_repeat Simple_repeat 2 179 0 7 767 198 74 0 0 chr11 23908225 23908252 -97935604 - MER5B DNA MER1_type -142 36 10 7 767 222 330 51 0 chr11 23908632 23908750 -97935106 - MIRb SINE MIR -36 232 109 7 767 345 271 49 0 chr11 23910118 23910240 -97933616 - MIR SINE MIR -44 218 91 7 767 1464 58 36 21 chr11 23910438 23910630 -97933226 - B2_Mm2 SINE B2 0 195 1 7 767 719 265 61 0 chr11 23913633 23913814 -97930042 - RMER30 DNA MER1_type -1 201 10 7 767 339 320 6 0 chr11 23913891 23914047 -97929809 + (GCCTG)n Simple_repeat Simple_repeat 5 161 0 7 767 531 0 0 0 chr11 23914699 23914758 -97929098 + (CAG)n Simple_repeat Simple_repeat 3 61 0 7 767 219 69 0 0 chr11 23915211 23915240 -97928616 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 7 767 298 268 23 11 chr11 23915286 23915373 -97928483 - PB1D9 SINE Alu -1 119 32 7 767 487 263 171 6 chr11 23918589 23918765 -97925091 - B3 SINE B2 -11 205 1 7 767 259 270 81 0 chr11 23919869 23919943 -97923913 - B1F2 SINE Alu -69 80 1 7 767 432 97 0 0 chr11 23919990 23920052 -97923804 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 7 767 560 240 44 25 chr11 23920068 23920080 -97923776 - RSINE1 SINE B4 -3 162 151 7 767 348 24 0 0 chr11 23920080 23920121 -97923735 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 767 560 240 44 25 chr11 23920121 23920266 -97923590 - RSINE1 SINE B4 -15 150 2 7 767 237 348 0 22 chr11 23920392 23920483 -97923373 + L2b LINE L2 3286 3374 -1 7 767 32 43 0 0 chr11 23921749 23921795 -97922061 + AT_rich Low_complexity Low_complexity 1 46 0 7 767 602 169 8 0 chr11 23922695 23922813 -97921043 + CT-rich Low_complexity Low_complexity 2 120 0 8 767 184 345 58 8 chr11 23922813 23922933 -97920923 + L2c LINE L2 3257 3382 -5 8 767 254 263 0 0 chr11 23923346 23923403 -97920453 + RSINE1 SINE B4 86 142 -23 8 767 559 0 28 0 chr11 23923424 23923495 -97920361 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 767 591 239 27 27 chr11 23924413 23924559 -97919297 + B1_Mm SINE Alu 1 146 -1 8 767 558 67 0 0 chr11 23924562 23924637 -97919219 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 8 767 351 250 0 0 chr11 23925030 23925102 -97918754 - RSINE1 SINE B4 -91 74 3 8 767 569 246 184 43 chr11 23925141 23925375 -97918481 - Lx8 LINE L1 -5 7468 7202 8 767 1236 41 7 0 chr11 23925478 23925624 -97918232 - B1_Mus2 SINE Alu 0 147 1 8 767 2602 249 134 11 chr11 23925697 23926482 -97917374 - Lx8 LINE L1 -277 7196 6316 8 767 279 273 93 7 chr11 23926684 23926824 -97917032 + L1MB2 LINE L1 5281 5432 -739 8 767 468 304 83 21 chr11 23926905 23927147 -97916709 + L1MB2 LINE L1 5651 5907 -264 8 767 451 181 15 128 chr11 23927166 23927187 -97916669 + MT2B LTR ERVL 147 152 -449 8 767 1017 79 0 0 chr11 23927187 23927327 -97916529 + B1_Mus1 SINE Alu 2 141 -7 8 767 644 67 11 0 chr11 23927328 23927418 -97916438 + (GGAAA)n Simple_repeat Simple_repeat 4 94 0 8 767 399 283 55 68 chr11 23927419 23927654 -97916202 + L1MB2 LINE L1 5946 6177 -3 8 767 225 356 10 19 chr11 23928852 23928955 -97914901 - B4A SINE B4 -46 246 145 8 767 233 282 90 0 chr11 23928986 23929064 -97914792 - B4A SINE B4 -207 85 1 8 767 262 291 131 11 chr11 23929071 23929262 -97914594 + L2 LINE L2 2098 2311 -1108 8 767 2374 192 32 138 chr11 23930595 23931278 -97912578 - RMER19C LTR ERVK 0 611 1 8 767 266 291 110 8 chr11 23931635 23931753 -97912103 + MLT1A1 LTR MaLR 279 408 0 8 767 190 321 18 0 chr11 23931946 23932002 -97911854 - MIRm SINE MIR -166 110 54 8 767 218 275 63 0 chr11 23932181 23932289 -97911567 - MIRm SINE MIR -108 160 50 8 767 180 77 0 0 chr11 23932764 23932790 -97911066 + (G)n Simple_repeat Simple_repeat 1 26 0 8 767 216 163 0 0 chr11 23934222 23934265 -97909591 + CT-rich Low_complexity Low_complexity 1 43 0 8 767 1049 205 19 42 chr11 23934275 23934489 -97909367 - B3 SINE B2 -7 209 1 8 767 26 64 0 0 chr11 23934617 23934664 -97909192 + AT_rich Low_complexity Low_complexity 1 47 0 8 767 1198 61 0 0 chr11 23934672 23934819 -97909037 + B1_Mus2 SINE Alu 1 147 0 8 767 477 202 123 175 chr11 23935235 23935463 -97908393 + B3 SINE B2 1 216 0 8 767 451 312 29 107 chr11 23935628 23936041 -97907815 + MLT1C LTR MaLR 59 439 -28 8 767 660 67 0 0 chr11 23936168 23936258 -97907598 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 8 767 314 202 17 22 chr11 23936430 23936520 -97907336 - MTEb LTR MaLR -13 366 278 8 767 2002 231 69 26 chr11 23936979 23937518 -97906338 + Lx9 LINE L1 7075 7636 -8 8 767 793 239 11 5 chr11 23939537 23939722 -97904134 + B3 SINE B2 25 210 -6 8 767 357 236 66 0 chr11 23939748 23939854 -97904002 - MLT1C LTR MaLR -354 113 1 8 767 1068 30 82 0 chr11 23940844 23940979 -97902877 - B1_Mm SINE Alu 0 147 2 8 767 947 160 6 0 chr11 23941508 23941683 -97902173 + GA-rich Low_complexity Low_complexity 1 176 0 8 767 192 77 0 0 chr11 23941684 23941710 -97902146 + (CAGAA)n Simple_repeat Simple_repeat 2 27 0 8 767 251 375 49 72 chr11 23942373 23942568 -97901288 - L2 LINE L2 -447 2972 2766 8 767 838 26 256 0 chr11 23942568 23942685 -97901171 + B1_Mus2 SINE Alu 1 147 0 8 767 251 375 49 72 chr11 23942685 23942880 -97900976 - L2 LINE L2 -654 2765 2591 8 767 331 279 89 8 chr11 23943184 23943307 -97900549 - MLT2F LTR ERVL -517 146 14 8 767 199 310 39 20 chr11 23943472 23943574 -97900282 - L2 LINE L2 -1179 2240 2137 8 767 659 189 200 6 chr11 23943603 23943773 -97900083 + B3 SINE B2 4 206 -10 8 767 1056 69 0 0 chr11 23944836 23944966 -97898890 - B1_Mus2 SINE Alu -17 130 1 8 767 249 211 145 0 chr11 23944980 23945056 -97898800 - ORSL DNA Tip100 -126 149 63 8 767 286 267 110 11 chr11 23945057 23945148 -97898708 - MLT1D LTR MaLR 0 505 406 8 767 257 304 108 11 chr11 23945281 23945374 -97898482 - MLT1D LTR MaLR -310 195 94 8 767 840 299 45 11 chr11 23947080 23947391 -97896465 + MER2 DNA MER2_type 8 344 -1 8 767 674 263 40 17 chr11 23947556 23947730 -97896126 - B3A SINE B2 -20 178 1 8 767 187 306 0 0 chr11 23950939 23951001 -97892855 + L2a LINE L2 3354 3415 -11 8 767 225 0 0 0 chr11 23951071 23951096 -97892760 + (TTG)n Simple_repeat Simple_repeat 3 27 0 8 767 554 0 15 0 chr11 23951764 23951830 -97892026 + (TC)n Simple_repeat Simple_repeat 2 68 0 8 767 378 0 0 0 chr11 23953306 23953348 -97890508 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 767 528 16 0 0 chr11 23954398 23954459 -97889397 + (TTTAG)n Simple_repeat Simple_repeat 2 62 0 8 767 441 0 0 0 chr11 23954975 23955024 -97888832 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 8 767 824 164 14 0 chr11 23955453 23955599 -97888257 - B1_Mur1 SINE Alu 0 149 2 8 767 198 103 0 0 chr11 23955887 23955916 -97887940 + (CAGT)n Simple_repeat Simple_repeat 1 29 0 8 767 714 182 215 6 chr11 23956186 23956363 -97887493 + B3 SINE B2 2 215 -1 8 767 233 29 0 29 chr11 23956490 23956525 -97887331 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 767 1089 88 0 0 chr11 23956525 23956662 -97887194 - B1_Mm SINE Alu -10 137 1 8 767 1053 130 0 0 chr11 23956665 23956811 -97887045 + B1_Mus2 SINE Alu 2 147 0 8 767 576 112 0 45 chr11 23957424 23957536 -97886320 - L1Md_F2 LINE L1 -2 6580 6474 8 767 608 43 0 0 chr11 23957536 23957606 -97886250 + L1_Mus1 LINE L1 6375 6444 -123 8 767 410 181 0 14 chr11 23958269 23958342 -97885514 + ID4 SINE ID 1 72 -11 8 767 378 0 0 0 chr11 23960037 23960079 -97883777 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 767 1100 124 6 0 chr11 23961362 23961540 -97882316 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 8 767 180 0 0 0 chr11 23961659 23961679 -97882177 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 767 646 44 22 0 chr11 23962229 23962319 -97881537 + (TC)n Simple_repeat Simple_repeat 1 92 0 8 767 261 0 0 0 chr11 23962521 23962550 -97881306 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 767 180 200 0 0 chr11 23962550 23962590 -97881266 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 767 186 71 0 0 chr11 23964634 23964662 -97879194 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 767 473 47 0 15 chr11 23967336 23967401 -97876455 + (TA)n Simple_repeat Simple_repeat 1 64 0 8 767 522 223 157 0 chr11 23968498 23968619 -97875237 + ID_B1 SINE B4 83 222 -2 8 767 1402 73 21 0 chr11 23968758 23968949 -97874907 + B2_Mm2 SINE B2 1 195 0 8 767 913 158 7 20 chr11 23969604 23969753 -97874103 + B1_Mur2 SINE Alu 2 148 -1 8 767 221 119 28 56 chr11 23969754 23969825 -97874031 + (CAAA)n Simple_repeat Simple_repeat 4 72 0 8 767 279 258 6 24 chr11 23970324 23970491 -97873365 + (CACCAT)n Simple_repeat Simple_repeat 5 168 0 8 767 460 342 9 43 chr11 23970498 23970709 -97873147 + HAL1-2a_MD LINE L1 2349 2552 -472 8 767 246 281 156 0 chr11 23970881 23970945 -97872911 - ID4_ SINE ID -7 76 3 8 767 308 294 69 0 chr11 23970959 23971061 -97872795 - PB1D10 SINE Alu -8 109 1 8 767 1421 237 151 7 chr11 23971172 23971630 -97872226 + L1MA5 LINE L1 5777 6300 0 8 767 552 100 0 0 chr11 23971853 23971933 -97871923 + (CATA)n Simple_repeat Simple_repeat 4 83 0 8 767 356 0 23 0 chr11 23972086 23972130 -97871726 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 767 426 85 0 0 chr11 23972459 23972518 -97871338 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 767 210 171 0 0 chr11 23972553 23972594 -97871262 + A-rich Low_complexity Low_complexity 1 41 0 8 767 219 222 0 43 chr11 23973088 23973135 -97870721 - L2b LINE L2 -1 3374 3330 8 767 207 0 0 0 chr11 23975702 23975725 -97868131 + (A)n Simple_repeat Simple_repeat 1 23 0 8 767 411 21 0 0 chr11 23976333 23976381 -97867475 + (CTG)n Simple_repeat Simple_repeat 3 50 0 8 767 239 114 23 0 chr11 23978129 23978173 -97865683 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 767 198 0 0 0 chr11 23978352 23978374 -97865482 + (CCG)n Simple_repeat Simple_repeat 2 23 0 8 767 21 36 0 0 chr11 23978456 23978484 -97865372 + AT_rich Low_complexity Low_complexity 1 28 0 8 767 30 0 0 0 chr11 23979334 23979364 -97864492 + AT_rich Low_complexity Low_complexity 1 30 0 8 767 236 73 73 0 chr11 23979494 23979535 -97864321 + (GAAAA)n Simple_repeat Simple_repeat 5 48 0 8 767 228 204 0 20 chr11 23979606 23979656 -97864200 - L1M2 LINE L1 -2521 3622 3574 8 767 202 302 0 0 chr11 23980616 23980679 -97863177 + C-rich Low_complexity Low_complexity 1 63 0 8 767 249 128 0 0 chr11 23984129 23984176 -97859680 + (T)n Simple_repeat Simple_repeat 1 47 0 8 767 387 0 0 0 chr11 23984960 23985003 -97858853 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 768 234 0 0 0 chr11 23988608 23988634 -97855222 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 768 25 0 0 0 chr11 23991358 23991383 -97852473 + AT_rich Low_complexity Low_complexity 1 25 0 8 768 236 292 10 0 chr11 23992087 23992183 -97851673 + CT-rich Low_complexity Low_complexity 3 99 0 8 768 611 88 11 0 chr11 23992160 23992251 -97851605 + (TC)n Simple_repeat Simple_repeat 2 93 0 8 768 22 0 0 0 chr11 23993847 23993869 -97849987 + AT_rich Low_complexity Low_complexity 1 22 0 8 768 191 227 0 43 chr11 23994680 23994726 -97849130 - MIRc SINE MIR -181 87 44 8 768 438 69 0 0 chr11 23997537 23997595 -97846261 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 768 573 115 0 0 chr11 23998373 23998460 -97845396 + (TC)n Simple_repeat Simple_repeat 2 88 0 8 768 180 97 0 0 chr11 23998602 23998633 -97845223 + (A)n Simple_repeat Simple_repeat 1 31 0 8 768 24 53 0 0 chr11 23999512 23999550 -97844306 + AT_rich Low_complexity Low_complexity 1 38 0 9 768 297 0 0 0 chr11 24000390 24000423 -97843433 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 768 459 0 0 0 chr11 24000423 24000473 -97843383 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 768 397 292 58 35 chr11 24001600 24001774 -97842082 + MIR SINE MIR 63 240 -22 3 768 369 0 0 0 chr11 24002035 24002076 -97841780 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 768 206 258 32 16 chr11 24002100 24002163 -97841693 + MIRb SINE MIR 59 122 -146 5 768 213 39 0 0 chr11 24002564 24002590 -97841266 + (T)n Simple_repeat Simple_repeat 1 26 0 6 768 360 158 0 0 chr11 24002902 24002978 -97840878 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 768 1122 66 24 6 chr11 24003842 24004010 -97839846 + (TTTCC)n Simple_repeat Simple_repeat 5 175 0 8 768 942 176 0 0 chr11 24004010 24004220 -97839636 + CT-rich Low_complexity Low_complexity 1 210 0 9 768 838 192 181 0 chr11 24005603 24005785 -97838071 + B3 SINE B2 2 216 0 1 768 1649 31 5 0 chr11 24005894 24006085 -97837771 + B2_Mm1t SINE B2 2 193 0 1 768 293 254 70 28 chr11 24006122 24006254 -97837602 - B3A SINE B2 -20 196 57 1 768 21 36 0 0 chr11 24007270 24007298 -97836558 + AT_rich Low_complexity Low_complexity 1 28 0 1 768 584 97 0 11 chr11 24008019 24008113 -97835743 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 768 438 149 0 0 chr11 24008112 24008199 -97835657 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 768 328 274 16 106 chr11 24009393 24009581 -97834275 + L1MC5 LINE L1 7646 7816 -145 1 768 462 65 0 0 chr11 24010475 24010537 -97833319 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 768 318 50 0 0 chr11 24012749 24012789 -97831067 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 768 436 250 10 10 chr11 24012795 24012896 -97830960 + B1_Mur1 SINE Alu 36 136 -13 1 768 186 43 0 0 chr11 24012897 24012920 -97830936 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 768 332 237 38 76 chr11 24012934 24013039 -97830817 - PB1D7 SINE Alu -1 119 19 2 768 251 259 17 17 chr11 24013742 24013801 -97830055 + ID4 SINE ID 2 60 -23 2 768 388 119 60 0 chr11 24013801 24013868 -97829988 + HAL1-3A_ME LINE L1 1961 2031 -827 2 768 399 209 0 0 chr11 24013868 24013983 -97829873 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 768 336 83 0 0 chr11 24014005 24014053 -97829803 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 768 367 257 71 35 chr11 24014556 24014697 -97829159 - L3b LINE CR1 -155 327 182 2 768 219 69 0 0 chr11 24016283 24016312 -97827544 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2 768 267 246 15 0 chr11 24016551 24016616 -97827240 + (TAA)n Simple_repeat Simple_repeat 3 68 0 2 768 183 291 47 71 chr11 24017315 24017400 -97826456 - L2b LINE L2 -16 3359 3277 2 768 355 333 118 30 chr11 24019082 24019345 -97824511 - L2a LINE L2 -2 3424 3139 2 768 197 372 56 44 chr11 24019654 24019834 -97824022 - L2a LINE L2 -748 2671 2490 2 768 214 128 43 0 chr11 24021047 24021094 -97822762 + (TGGG)n Simple_repeat Simple_repeat 3 51 0 3 768 216 97 0 0 chr11 24023325 24023356 -97820500 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 768 201 167 28 0 chr11 24024876 24024912 -97818944 + CT-rich Low_complexity Low_complexity 3 39 0 3 768 21 36 0 0 chr11 24024965 24024993 -97818863 + AT_rich Low_complexity Low_complexity 1 28 0 3 768 304 337 94 19 chr11 24026055 24026161 -97817695 - PB1D10 SINE Alu -3 114 1 3 768 352 270 48 0 chr11 24027424 24027556 -97816300 - MIRb SINE MIR -55 153 19 3 768 652 195 13 0 chr11 24028331 24028490 -97815366 + GA-rich Low_complexity Low_complexity 1 161 0 3 768 306 0 0 0 chr11 24028847 24028881 -97814975 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 768 1142 63 0 21 chr11 24028882 24029027 -97814829 - B1_Mm SINE Alu -5 142 1 3 768 360 0 0 0 chr11 24029027 24029067 -97814789 + (T)n Simple_repeat Simple_repeat 1 40 0 3 768 211 324 14 0 chr11 24030416 24030490 -97813366 + MIRc SINE MIR 194 268 0 4 768 578 155 175 33 chr11 24032404 24032524 -97811332 - B1_Mus1 SINE Alu -10 138 2 4 768 217 321 0 0 chr11 24033067 24033123 -97810733 - MIR SINE MIR -79 183 128 4 768 893 283 77 14 chr11 24034255 24034698 -97809158 + L1ME1 LINE L1 5642 6123 -56 4 768 336 202 146 0 chr11 24034701 24034790 -97809066 + L1ME1 LINE L1 6067 6168 -11 4 768 320 220 59 112 chr11 24034875 24035044 -97808812 + RLTR25B LTR ERVK 339 498 -530 4 768 892 27 9 0 chr11 24034981 24035091 -97808765 + B1_Mus2 SINE Alu 36 146 -1 4 768 291 119 11 35 chr11 24035091 24035178 -97808678 + (CAAA)n Simple_repeat Simple_repeat 1 85 0 4 768 208 173 19 0 chr11 24035184 24035236 -97808620 + A-rich Low_complexity Low_complexity 2 54 0 4 768 363 23 0 0 chr11 24035784 24035828 -97808028 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 768 263 264 70 43 chr11 24035860 24035975 -97807881 + MT2B2 LTR ERVL 161 278 -306 5 768 541 227 69 9 chr11 24035880 24036011 -97807845 + B1F1 SINE Alu 20 146 -3 5 768 619 237 121 41 chr11 24039652 24039871 -97803985 - ORR1E LTR MaLR -1 378 101 5 768 896 189 90 24 chr11 24039871 24040082 -97803774 - URR1B DNA MER1_type 0 225 1 5 768 619 268 157 21 chr11 24040082 24040179 -97803677 - ORR1E LTR MaLR -259 100 1 5 768 221 210 45 80 chr11 24041064 24041152 -97802704 + MIRm SINE MIR 79 163 -113 5 768 423 0 0 0 chr11 24042947 24042994 -97800862 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 768 351 0 0 0 chr11 24043738 24043777 -97800079 + (TGG)n Simple_repeat Simple_repeat 1 39 0 5 768 205 214 0 18 chr11 24044377 24044434 -97799422 + CT-rich Low_complexity Low_complexity 1 56 0 5 768 456 132 26 13 chr11 24045263 24045340 -97798516 + PB1D9 SINE Alu 37 114 -6 5 768 309 26 0 0 chr11 24045341 24045379 -97798477 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 5 768 360 0 0 0 chr11 24045405 24045445 -97798411 + (TTGTG)n Simple_repeat Simple_repeat 5 44 0 6 768 194 338 0 49 chr11 24049956 24050037 -97793819 - MIR SINE MIR -94 114 38 6 768 599 210 66 16 chr11 24050104 24050225 -97793631 - B1F SINE Alu -1 148 22 6 768 248 304 85 31 chr11 24050124 24050253 -97793603 + YREP_Mm Unknown Unknown 194 329 -1483 6 768 615 274 178 4 chr11 24051032 24051274 -97792582 + MER2 DNA MER2_type 10 293 -52 6 768 189 385 107 0 chr11 24051386 24051508 -97792348 + L2b LINE L2 3240 3374 -1 6 768 187 259 0 0 chr11 24051861 24051915 -97791941 - L3 LINE CR1 -3310 1179 1126 6 768 794 193 14 0 chr11 24052294 24052439 -97791417 + B1_Mur1 SINE Alu 3 149 0 6 768 243 284 0 56 chr11 24053086 24053157 -97790699 - ID4 SINE ID -15 68 2 6 768 383 255 4 2 chr11 24054132 24054230 -97789626 - MER5A DNA MER1_type -68 121 23 6 768 488 221 218 16 chr11 24054977 24055101 -97788755 - RSINE1 SINE B4 -14 151 3 7 768 251 305 56 22 chr11 24055146 24055308 -97788548 + MIR3 SINE MIR 4 176 -100 7 768 1213 154 17 39 chr11 24055897 24056127 -97787729 - URR1A DNA MER1_type 0 226 2 7 768 3111 239 50 25 chr11 24056281 24057115 -97786741 - RCHARR1 DNA MER1_type -6 968 114 7 768 389 238 12 0 chr11 24057060 24057144 -97786712 + RCHARR1 DNA MER1_type 561 645 -329 7 768 189 0 0 0 chr11 24058524 24058545 -97785311 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 768 360 0 0 0 chr11 24059954 24059994 -97783862 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 768 190 204 91 18 chr11 24062791 24062846 -97781010 - MIRm SINE MIR -116 160 102 7 768 351 141 0 0 chr11 24064106 24064170 -97779686 + (GGA)n Simple_repeat Simple_repeat 1 64 0 7 768 207 0 0 0 chr11 24065273 24065296 -97778560 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 7 768 258 160 0 0 chr11 24065350 24065400 -97778456 + T-rich Low_complexity Low_complexity 1 50 0 8 768 24 0 0 0 chr11 24066171 24066195 -97777661 + AT_rich Low_complexity Low_complexity 1 24 0 8 768 191 36 36 0 chr11 24066696 24066724 -97777132 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 8 768 22 0 0 0 chr11 24066952 24066974 -97776882 + AT_rich Low_complexity Low_complexity 1 22 0 8 768 183 42 0 0 chr11 24067325 24067349 -97776507 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 768 333 0 0 0 chr11 24067653 24067690 -97776166 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 768 219 139 0 0 chr11 24067911 24067947 -97775909 + (A)n Simple_repeat Simple_repeat 1 36 0 8 768 25 0 0 0 chr11 24068239 24068264 -97775592 + AT_rich Low_complexity Low_complexity 1 25 0 8 768 21 0 0 0 chr11 24068408 24068429 -97775427 + AT_rich Low_complexity Low_complexity 1 21 0 8 768 432 0 0 0 chr11 24071388 24071436 -97772420 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 8 768 25 0 0 0 chr11 24072943 24072968 -97770888 + AT_rich Low_complexity Low_complexity 1 25 0 9 768 450 288 10 31 chr11 24074423 24074821 -97769035 + CT-rich Low_complexity Low_complexity 1 389 0 9 768 469 250 0 127 chr11 24074744 24075268 -97768588 + polypyrimidine Low_complexity Low_complexity 1 457 0 9 768 315 389 0 0 chr11 24075143 24075323 -97768533 + CT-rich Low_complexity Low_complexity 1 180 0 9 768 180 0 0 0 chr11 24076408 24076428 -97767428 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 768 237 281 128 43 chr11 24079057 24079198 -97764658 - MIR SINE MIR 0 262 110 9 768 522 329 103 49 chr11 24079275 24079499 -97764357 - B4A SINE B4 0 292 57 9 768 1052 96 0 40 chr11 24079606 24079748 -97764108 + B1_Mus2 SINE Alu 1 137 -10 9 768 375 41 0 0 chr11 24079748 24079797 -97764059 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 9 768 239 299 110 8 chr11 24080001 24080119 -97763737 - L2b LINE L2 0 3375 3246 9 768 1182 95 65 0 chr11 24081382 24081550 -97762306 + B2_Mm1t SINE B2 1 179 -14 1 768 349 135 37 9 chr11 24081602 24081701 -97762155 + B2_Mm2 SINE B2 47 183 -12 1 768 240 35 0 0 chr11 24081701 24081730 -97762126 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 768 240 35 0 0 chr11 24085859 24085888 -97757968 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1 768 207 393 53 37 chr11 24087018 24087208 -97756648 - MIRc SINE MIR -31 237 45 1 768 658 291 99 46 chr11 24087558 24088058 -97755798 + L1MB2 LINE L1 5600 6134 -37 1 768 225 300 113 0 chr11 24090058 24090155 -97753701 + MIR SINE MIR 46 168 -108 1 768 935 274 14 0 chr11 24091152 24091360 -97752496 + Lx8 LINE L1 6955 7165 -308 1 768 856 158 190 0 chr11 24091360 24091544 -97752312 + URR1B DNA MER1_type 7 225 0 1 768 700 264 32 43 chr11 24091548 24091801 -97752055 + Lx8 LINE L1 7169 7418 -55 1 768 202 277 137 11 chr11 24091934 24092029 -97751827 - MIRb SINE MIR -52 216 110 1 768 222 118 0 0 chr11 24092823 24092857 -97750999 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 768 689 224 39 0 chr11 24094327 24094483 -97749373 + RSINE1 SINE B4 3 164 -1 1 768 790 316 96 14 chr11 24095632 24095995 -97747861 + L1ME4a LINE L1 5542 5934 -190 1 768 676 311 57 60 chr11 24096702 24097054 -97746802 - MLT1E1 LTR MaLR -3 651 301 1 768 430 287 185 24 chr11 24099039 24099368 -97744488 + L1MC LINE L1 4567 4948 -1198 1 768 318 179 119 0 chr11 24099429 24099496 -97744360 + L1ME1 LINE L1 5745 5819 -360 1 768 321 305 104 83 chr11 24099513 24099534 -97744322 + L1ME1 LINE L1 5808 5825 -354 1 768 387 0 0 0 chr11 24099534 24099577 -97744279 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 768 321 305 104 83 chr11 24099577 24099748 -97744108 + L1ME1 LINE L1 5826 6004 -175 1 768 1027 86 21 7 chr11 24099879 24100019 -97743837 + B1_Mus1 SINE Alu 1 142 -6 1 768 878 119 0 7 chr11 24100021 24100165 -97743691 + (GGA)n Simple_repeat Simple_repeat 3 145 0 1 768 411 113 0 0 chr11 24102211 24102273 -97741583 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 768 183 42 0 0 chr11 24102873 24102897 -97740959 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 768 415 304 33 65 chr11 24105363 24105576 -97738280 - L1MA4A LINE L1 -373 5930 5719 1 768 1446 196 49 12 chr11 24105761 24106086 -97737770 - RLTR15 LTR ERVK -19 340 4 1 768 380 245 31 41 chr11 24106149 24106247 -97737609 - RSINE1 SINE B4 -67 98 2 1 768 401 304 58 22 chr11 24106623 24106761 -97737095 - MIRc SINE MIR -124 144 2 1 768 2412 191 62 134 chr11 24107998 24108662 -97735194 + RLTR18 LTR ERVK 1 616 0 1 768 443 229 94 0 chr11 24109724 24109820 -97734036 - B1_Mur2 SINE Alu -5 144 40 1 768 1332 102 5 5 chr11 24109929 24110117 -97733739 + B2_Mm1a SINE B2 2 189 -4 1 768 559 272 83 44 chr11 24110600 24110645 -97733211 - MER20 DNA MER1_type 0 219 172 1 768 2274 89 38 6 chr11 24110645 24110962 -97732894 + ORR1A2 LTR MaLR 1 327 0 1 768 559 272 83 44 chr11 24110962 24111120 -97732736 - MER20 DNA MER1_type -48 171 8 1 768 432 0 0 0 chr11 24112069 24112117 -97731739 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 768 396 0 0 0 chr11 24112117 24112160 -97731696 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 768 203 171 24 0 chr11 24113105 24113146 -97730710 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 768 682 320 36 0 chr11 24113238 24113457 -97730399 - B4A SINE B4 -17 275 49 1 768 926 286 29 36 chr11 24116240 24116548 -97727308 - Lx5 LINE L1 0 7050 6745 1 768 553 337 129 3 chr11 24116648 24116943 -97726913 + MLT1E2 LTR MaLR 296 627 0 1 769 214 50 24 24 chr11 24118796 24118837 -97725019 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 769 1642 168 0 8 chr11 24119426 24119684 -97724172 + ORR1B1 LTR MaLR 139 394 0 1 769 812 214 70 19 chr11 24119953 24120167 -97723689 + MER58B DNA MER1_type 1 225 -116 1 769 412 282 74 84 chr11 24120396 24120586 -97723270 - MLT1K LTR MaLR -6 589 402 1 769 747 289 31 5 chr11 24121737 24121932 -97721924 - MER58A DNA MER1_type -22 202 3 1 769 200 319 82 31 chr11 24123694 24123791 -97720065 - MIRb SINE MIR -36 232 131 1 769 639 98 0 0 chr11 24123914 24124006 -97719850 + (TCC)n Simple_repeat Simple_repeat 2 93 0 1 769 381 86 0 0 chr11 24124008 24124066 -97719790 + (CTG)n Simple_repeat Simple_repeat 3 60 0 1 769 245 253 31 62 chr11 24124806 24124903 -97718953 + ORR1E LTR MaLR 80 173 -186 1 769 556 254 53 15 chr11 24125118 24125250 -97718606 + B1_Mur1 SINE Alu 13 149 0 1 769 396 88 0 0 chr11 24126301 24126358 -97717498 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 769 333 297 62 8 chr11 24127623 24127752 -97716104 - MER5A1 DNA MER1_type -29 137 2 1 769 401 318 82 84 chr11 24128520 24128888 -97714968 + MER77 LTR ERVL 237 603 -4 1 769 963 145 0 14 chr11 24130739 24130886 -97712970 - B1_Mur4 SINE Alu 0 150 6 1 769 222 206 155 42 chr11 24131487 24131558 -97712298 + MIR SINE MIR 117 195 -67 1 769 365 310 70 0 chr11 24131777 24131935 -97711921 + L1M2 LINE L1 5487 5655 -636 1 769 324 255 86 46 chr11 24131946 24132098 -97711758 + Lx7 LINE L1 5697 5854 -1842 1 769 7538 58 15 28 chr11 24132374 24133370 -97710486 + L1Md_F2 LINE L1 5599 6581 -1 1 769 237 65 0 0 chr11 24133372 24133403 -97710453 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 769 277 382 75 29 chr11 24134509 24134749 -97709107 + LTR16A LTR ERVL 7 257 -194 1 769 201 254 0 0 chr11 24135221 24135292 -97708564 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 769 438 211 66 120 chr11 24135373 24135556 -97708300 - MTEb LTR MaLR -3 376 204 1 769 882 141 0 0 chr11 24135617 24135838 -97708018 + (CA)n Simple_repeat Simple_repeat 1 221 0 1 769 375 228 120 75 chr11 24135851 24135984 -97707872 - L1MC4 LINE L1 -209 7833 7695 1 769 327 25 0 0 chr11 24138325 24138365 -97705491 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 769 690 268 269 18 chr11 24138539 24138763 -97705093 + Lx8 LINE L1 7055 7343 -130 1 769 1130 86 0 0 chr11 24138763 24138903 -97704953 + B1_Mus2 SINE Alu 2 141 -6 1 769 690 268 269 18 chr11 24138903 24139013 -97704843 + Lx8 LINE L1 7344 7472 -1 1 769 395 292 53 99 chr11 24139095 24139108 -97704748 + B4A SINE B4 75 153 -139 1 769 776 163 14 41 chr11 24139108 24139255 -97704601 + B1_Mur3 SINE Alu 6 148 -1 1 769 395 292 53 99 chr11 24139255 24139266 -97704590 + B4A SINE B4 154 237 -55 1 769 275 300 0 0 chr11 24139301 24139381 -97704475 - ID4 SINE ID -1 82 3 1 769 273 259 0 12 chr11 24140320 24140406 -97703450 - L1MA4 LINE L1 -7 6293 6209 1 769 702 255 68 0 chr11 24140426 24140674 -97703182 - L1MA4 LINE L1 -290 6001 5715 1 769 237 167 0 0 chr11 24140718 24140772 -97703084 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 1 769 597 290 35 0 chr11 24140772 24140917 -97702939 - RSINE1 SINE B4 -2 163 14 1 769 462 143 0 0 chr11 24141410 24141487 -97702369 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 1 769 308 308 116 8 chr11 24141791 24141912 -97701944 - L1M5 LINE L1 -378 5786 5653 1 769 627 239 0 0 chr11 24145896 24146215 -97697641 + (TG)n Simple_repeat Simple_repeat 1 319 0 1 769 519 235 106 50 chr11 24147375 24147578 -97696278 + B3A SINE B2 3 193 -2 1 769 698 214 0 16 chr11 24147746 24147874 -97695982 - B1_Mur3 SINE Alu -19 130 5 1 769 423 0 0 0 chr11 24147875 24147922 -97695934 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 769 460 193 0 16 chr11 24149078 24149199 -97694657 + CT-rich Low_complexity Low_complexity 3 121 0 1 769 755 241 35 0 chr11 24149357 24149527 -97694329 + MamRep434 DNA TcMar 79 254 -172 1 769 261 57 0 0 chr11 24150741 24150776 -97693080 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 769 786 169 0 14 chr11 24151988 24152428 -97691428 + (CA)n Simple_repeat Simple_repeat 1 433 0 1 769 848 111 0 43 chr11 24152453 24152641 -97691215 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 769 607 265 95 31 chr11 24152754 24152987 -97690869 + MTEa LTR MaLR 1 249 -130 1 769 301 348 64 36 chr11 24153611 24153751 -97690105 - MIR SINE MIR -38 224 81 1 769 389 178 98 10 chr11 24154832 24154934 -97688922 + B1F SINE Alu 38 148 -1 1 769 276 30 0 0 chr11 24155044 24155077 -97688779 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 769 270 95 0 0 chr11 24156203 24156245 -97687611 + (CTG)n Simple_repeat Simple_repeat 3 44 0 1 769 214 175 25 0 chr11 24156469 24156509 -97687347 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 769 471 240 11 17 chr11 24156511 24156689 -97687167 + (TATG)n Simple_repeat Simple_repeat 1 177 0 1 769 743 206 0 6 chr11 24156689 24156870 -97686986 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 769 326 301 104 8 chr11 24158305 24158439 -97685417 - MIR3 SINE MIR -26 182 36 1 769 21 0 0 0 chr11 24158929 24158950 -97684906 + AT_rich Low_complexity Low_complexity 1 21 0 1 769 253 341 90 30 chr11 24160154 24160359 -97683497 - MIR SINE MIR -3 265 52 1 769 322 319 13 77 chr11 24160424 24160580 -97683276 + B4A SINE B4 1 146 -146 1 769 306 0 0 0 chr11 24160690 24160724 -97683132 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 769 355 248 51 63 chr11 24160734 24160890 -97682966 - B3A SINE B2 -23 170 1 1 769 462 18 0 0 chr11 24161019 24161074 -97682782 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 769 537 204 44 9 chr11 24161564 24161678 -97682178 + MTE2b LTR MaLR 60 177 -202 1 769 1691 168 113 266 chr11 24162275 24163145 -97680711 - RMER19A LTR ERVK 0 737 1 1 769 2395 106 6 0 chr11 24163576 24163897 -97679959 + ORR1A2 LTR MaLR 5 327 0 1 769 215 269 14 69 chr11 24164878 24164950 -97678906 - MIRb SINE MIR -80 188 121 1 769 223 304 85 39 chr11 24165683 24165813 -97678043 - L2a LINE L2 -6 3420 3285 1 769 618 14 0 0 chr11 24168933 24169004 -97674852 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 769 284 331 75 27 chr11 24169053 24169199 -97674657 - MIRb SINE MIR -112 156 4 2 769 946 116 7 21 chr11 24169744 24170037 -97673819 + (TCTCTG)n Simple_repeat Simple_repeat 1 288 0 2 769 877 129 11 11 chr11 24170059 24170239 -97673617 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 2 769 313 298 136 45 chr11 24170286 24170462 -97673394 - MLT2C1 LTR ERVL -164 233 42 2 769 650 234 116 47 chr11 24170986 24171219 -97672637 - Lx5 LINE L1 -5 7045 6797 2 769 679 281 83 32 chr11 24171327 24171640 -97672216 - MLT1B LTR MaLR -58 332 4 2 769 318 260 50 30 chr11 24171649 24171748 -97672108 - MER20 DNA MER1_type -101 118 18 2 769 185 311 189 63 chr11 24171778 24171905 -97671951 - MER5B DNA MER1_type -16 162 20 2 769 581 262 6 24 chr11 24172245 24172409 -97671447 + RSINE1 SINE B4 3 163 -2 2 769 305 340 176 5 chr11 24172533 24172737 -97671119 - L1M5 LINE L1 -629 5495 5257 2 769 679 235 48 15 chr11 24172963 24173150 -97670706 - B3A SINE B2 0 193 1 2 769 240 35 0 0 chr11 24173158 24173187 -97670669 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2 769 23 0 0 0 chr11 24173476 24173499 -97670357 + AT_rich Low_complexity Low_complexity 1 23 0 2 769 22 80 0 0 chr11 24174597 24174647 -97669209 + AT_rich Low_complexity Low_complexity 1 50 0 2 769 439 309 50 29 chr11 24174753 24174893 -97668963 + B3A SINE B2 40 182 -16 2 769 324 240 344 23 chr11 24174916 24175044 -97668812 + B3 SINE B2 48 216 0 2 769 196 139 26 65 chr11 24175048 24175125 -97668731 + A-rich Low_complexity Low_complexity 3 76 0 2 769 267 64 36 60 chr11 24175853 24175936 -97667920 + (CAAAC)n Simple_repeat Simple_repeat 2 82 0 2 769 814 359 108 37 chr11 24177071 24177554 -97666302 - MLT1F1 LTR MaLR -44 525 9 2 769 420 325 99 51 chr11 24177576 24177829 -97666027 + L1MEd LINE L1 993 1257 -4862 2 769 4019 16 0 0 chr11 24178195 24178636 -97665220 + MERVL-int LTR ERVL 2173 2613 -2872 2 769 198 0 0 0 chr11 24179436 24179458 -97664398 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2 769 185 108 0 26 chr11 24179458 24179496 -97664360 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2 769 228 31 31 0 chr11 24180923 24180955 -97662901 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 769 370 154 26 0 chr11 24180955 24181033 -97662823 + CT-rich Low_complexity Low_complexity 1 80 0 2 769 495 0 0 0 chr11 24181143 24181198 -97662658 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 769 319 317 39 0 chr11 24181257 24181361 -97662495 + L2a LINE L2 3304 3411 -15 2 769 549 0 0 0 chr11 24183508 24183569 -97660287 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 769 405 0 0 0 chr11 24184488 24184533 -97659323 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 769 200 180 20 20 chr11 24184923 24184974 -97658882 + CT-rich Low_complexity Low_complexity 3 53 0 2 769 262 205 26 0 chr11 24185272 24185350 -97658506 + CT-rich Low_complexity Low_complexity 1 80 0 2 769 264 318 18 36 chr11 24187706 24187817 -97656039 + MIRc SINE MIR 56 164 -104 2 769 283 260 153 20 chr11 24187943 24188041 -97655815 - PB1D10 SINE Alu -1 116 6 2 769 222 214 17 51 chr11 24187995 24188054 -97655802 - B4A SINE B4 -157 135 79 2 769 586 289 13 39 chr11 24188836 24188991 -97654865 - RSINE1 SINE B4 -8 157 7 2 769 21 36 0 0 chr11 24188996 24189024 -97654832 + AT_rich Low_complexity Low_complexity 1 28 0 2 769 383 206 29 12 chr11 24189781 24189953 -97653903 + GA-rich Low_complexity Low_complexity 3 177 0 2 769 716 182 44 36 chr11 24190550 24190687 -97653169 - B1_Mur2 SINE Alu -8 141 4 2 769 427 297 45 78 chr11 24190687 24190729 -97653127 - ID_B1 SINE B4 -8 216 44 2 769 230 348 136 33 chr11 24192037 24192221 -97651635 - MLT1K LTR MaLR -358 237 35 2 769 1264 21 0 0 chr11 24192307 24192452 -97651404 - B1_Mm SINE Alu -1 146 2 2 769 23 0 0 0 chr11 24193911 24193934 -97649922 + AT_rich Low_complexity Low_complexity 1 23 0 2 769 274 317 138 0 chr11 24194606 24194729 -97649127 - L1M2 LINE L1 -1139 5004 4865 2 769 2159 172 66 18 chr11 24194729 24195125 -97648731 + MTC LTR MaLR 2 416 -5 2 769 315 0 0 0 chr11 24195576 24195611 -97648245 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 769 189 0 0 0 chr11 24197496 24197517 -97646339 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 769 191 309 67 76 chr11 24199605 24199724 -97644132 + MIRc SINE MIR 18 135 -133 2 769 336 284 39 68 chr11 24199753 24199928 -97643928 + MIRb SINE MIR 61 236 -32 2 769 363 274 0 0 chr11 24200690 24200763 -97643093 + RSINE1 SINE B4 2 74 -91 2 769 391 350 91 21 chr11 24200860 24201098 -97642758 - MIR SINE MIR 0 268 10 2 769 180 237 75 50 chr11 24201271 24201351 -97642505 + L2b LINE L2 3195 3276 -99 2 769 333 0 0 0 chr11 24202055 24202092 -97641764 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 769 208 121 0 0 chr11 24202236 24202269 -97641587 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 2 769 287 274 14 0 chr11 24202649 24202722 -97641134 - ID4 SINE ID -4 79 6 2 769 316 254 118 8 chr11 24202726 24202845 -97641011 + MER53 DNA hAT 61 192 -1 2 769 394 228 19 38 chr11 24202750 24202855 -97641001 - MER53 DNA hAT -90 103 1 2 769 306 269 57 70 chr11 24203128 24203290 -97640566 + MIR SINE MIR 89 257 -11 2 769 221 227 14 43 chr11 24203695 24203764 -97640092 - MIRc SINE MIR -4 264 198 2 769 206 301 89 79 chr11 24204116 24204217 -97639639 + L2c LINE L2 3286 3387 0 2 769 387 0 0 0 chr11 24204845 24204888 -97638968 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 769 506 228 33 46 chr11 24204922 24205074 -97638782 - ORSL-2b DNA Tip100 -350 158 9 2 769 21 36 0 0 chr11 24205688 24205716 -97638140 + AT_rich Low_complexity Low_complexity 1 28 0 2 769 256 244 79 121 chr11 24208578 24208718 -97635138 - B1F SINE Alu -13 136 3 2 769 241 294 0 81 chr11 24208765 24208839 -97635017 + MIRb SINE MIR 193 262 -6 2 769 450 0 0 0 chr11 24209092 24209142 -97634714 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 769 426 282 52 32 chr11 24209144 24209298 -97634558 - RSINE1 SINE B4 -5 160 4 2 769 472 265 85 96 chr11 24209440 24209466 -97634390 - B2_Mm2 SINE B2 -9 186 158 2 769 405 0 0 0 chr11 24209466 24209511 -97634345 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2 769 783 239 7 26 chr11 24209511 24209672 -97634184 - B3 SINE B2 -38 157 1 2 769 546 365 99 37 chr11 24209697 24210312 -97633544 + L1M2 LINE L1 4735 5387 -756 2 769 693 190 31 37 chr11 24210334 24210503 -97633353 - B3 SINE B2 -14 181 13 2 769 25 0 0 0 chr11 24214089 24214114 -97629742 + AT_rich Low_complexity Low_complexity 1 25 0 2 769 246 354 62 0 chr11 24214432 24214528 -97629328 - MIRb SINE MIR -7 261 160 2 769 297 0 0 0 chr11 24214548 24214581 -97629275 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 769 185 108 27 0 chr11 24214581 24214618 -97629238 + (TGGGGG)n Simple_repeat Simple_repeat 4 41 0 2 769 257 310 19 65 chr11 24215640 24215747 -97628109 - MIRb SINE MIR -131 137 36 2 769 208 305 17 0 chr11 24217017 24217076 -97626780 - MER5A DNA MER1_type -20 169 110 2 769 205 217 0 61 chr11 24217959 24218008 -97625848 + L4 LINE RTE 1984 2029 0 2 769 1225 148 78 15 chr11 24218977 24219245 -97624611 - ORR1B1 LTR MaLR 0 394 62 2 769 21 0 0 0 chr11 24219784 24219805 -97624051 + AT_rich Low_complexity Low_complexity 1 21 0 2 769 461 293 97 36 chr11 24219874 24220069 -97623787 - MER20 DNA MER1_type -1 218 12 2 769 259 98 0 0 chr11 24220624 24220665 -97623191 - L1MC4a LINE L1 -2 7880 7840 2 769 12643 96 19 27 chr11 24220942 24223699 -97620157 - L1_Mus2 LINE L1 0 6566 3834 2 769 904 298 130 16 chr11 24223698 24224190 -97619666 - L1MC4a LINE L1 -308 7574 7027 2 769 866 282 9 45 chr11 24224947 24225196 -97618660 - B4 SINE B4 0 292 63 2 769 219 167 0 0 chr11 24225508 24225550 -97618306 + (TATG)n Simple_repeat Simple_repeat 2 43 0 2 769 23 33 0 0 chr11 24225563 24225593 -97618263 + AT_rich Low_complexity Low_complexity 1 30 0 2 769 362 183 24 0 chr11 24226139 24226221 -97617635 - B3 SINE B2 0 216 133 2 769 200 111 28 0 chr11 24229580 24229616 -97614240 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 769 227 328 0 0 chr11 24229973 24230040 -97613816 - MER5A DNA MER1_type -105 84 18 2 769 257 332 90 28 chr11 24231523 24231734 -97612122 - MIR SINE MIR -22 240 17 2 769 1008 185 35 5 chr11 24232457 24232658 -97611198 + B3 SINE B2 2 208 -8 2 769 324 263 0 0 chr11 24233435 24233549 -97610307 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 769 243 259 96 64 chr11 24234739 24234896 -97608960 + Charlie16a DNA MER1_type 148 309 -33 2 769 30 69 0 0 chr11 24235191 24235249 -97608607 + AT_rich Low_complexity Low_complexity 1 58 0 2 769 1644 157 88 6 chr11 24235494 24235814 -97608042 + ORR1B1 LTR MaLR 41 386 -8 2 769 325 263 0 0 chr11 24235816 24235892 -97607964 + B4A SINE B4 156 231 -61 2 769 1315 113 11 5 chr11 24235892 24236078 -97607778 + B2_Mm2 SINE B2 1 187 -8 2 769 216 361 46 0 chr11 24237355 24237485 -97606371 - MIR SINE MIR -10 252 117 2 769 224 299 0 0 chr11 24239012 24239079 -97604777 + C-rich Low_complexity Low_complexity 1 67 0 2 769 474 33 0 0 chr11 24239413 24239473 -97604383 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 769 200 189 0 0 chr11 24240443 24240480 -97603376 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 769 180 143 37 61 chr11 24240515 24240597 -97603259 + (CACAC)n Simple_repeat Simple_repeat 1 80 0 2 769 265 193 39 39 chr11 24240595 24240773 -97603083 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 769 279 104 0 0 chr11 24241769 24241817 -97602039 + (T)n Simple_repeat Simple_repeat 1 48 0 3 769 207 0 0 0 chr11 24241879 24241902 -97601954 + (T)n Simple_repeat Simple_repeat 1 23 0 3 769 656 161 0 8 chr11 24242486 24242611 -97601245 + CT-rich Low_complexity Low_complexity 3 126 0 3 769 342 0 0 0 chr11 24244922 24244960 -97598896 + (T)n Simple_repeat Simple_repeat 1 38 0 3 769 292 269 113 48 chr11 24246774 24246942 -97596914 + L2a LINE L2 3244 3422 -4 3 769 360 0 0 0 chr11 24247749 24247789 -97596067 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 770 603 102 0 0 chr11 24248531 24248619 -97595237 + (TCC)n Simple_repeat Simple_repeat 3 90 0 3 770 240 156 22 0 chr11 24249075 24249120 -97594736 + B1_Mus1 SINE Alu 11 56 -92 3 770 687 263 30 15 chr11 24249330 24249531 -97594325 + ID_B1 SINE B4 14 217 -7 3 770 368 286 119 0 chr11 24251162 24251288 -97592568 + MLT1I LTR MaLR 194 334 -77 3 770 2046 98 10 13 chr11 24251566 24251866 -97591990 + L1_Mus3 LINE L1 6340 6638 0 3 770 220 111 0 0 chr11 24252541 24252577 -97591279 - B1_Mus2 SINE Alu -111 36 1 3 770 2481 262 111 8 chr11 24252762 24253531 -97590325 - Lx7 LINE L1 -194 7502 6655 3 770 238 288 48 36 chr11 24254012 24254095 -97589761 + L1MEc LINE L1 181 264 -6136 3 770 777 245 151 25 chr11 24254343 24254828 -97589028 + L1MEc LINE L1 564 1109 -5291 3 770 410 287 119 0 chr11 24254829 24254972 -97588884 - MLT2B2 LTR ERVL -42 520 361 3 770 202 56 111 0 chr11 24255003 24255039 -97588817 + (TTAA)n Simple_repeat Simple_repeat 2 41 0 3 770 490 274 7 15 chr11 24255049 24255186 -97588670 - MLT2B2 LTR ERVL -379 136 1 3 770 374 232 28 94 chr11 24255188 24255305 -97588551 + L1MEc LINE L1 2056 2164 -4236 3 770 1057 237 50 134 chr11 24255305 24255709 -97588147 - ORR1D2 LTR MaLR 0 370 1 3 770 374 232 28 94 chr11 24255709 24255772 -97588084 + L1MEc LINE L1 2165 2224 -4176 3 770 205 88 29 0 chr11 24255782 24255816 -97588040 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 770 219 229 16 16 chr11 24255825 24255887 -97587969 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 770 1016 286 110 50 chr11 24255923 24256750 -97587106 + L1MEc LINE L1 2445 3322 -2997 3 770 859 104 96 0 chr11 24256750 24256885 -97586971 + B1_Mus1 SINE Alu 1 148 0 3 770 1016 286 110 50 chr11 24256885 24257024 -97586832 + L1MEc LINE L1 3323 3469 -2850 3 770 392 258 41 0 chr11 24257042 24257139 -97586717 - PB1D10 SINE Alu -16 101 1 3 770 440 99 0 14 chr11 24257426 24257498 -97586358 + (TCC)n Simple_repeat Simple_repeat 2 72 0 3 770 1261 22 22 4 chr11 24257774 24258005 -97585851 + (TTTC)n Simple_repeat Simple_repeat 1 235 0 3 770 577 231 107 21 chr11 24258032 24258266 -97585590 + Lx7 LINE L1 7443 7696 0 3 770 216 387 21 0 chr11 24258937 24259030 -97584826 + MIR3 SINE MIR 65 159 -49 3 770 2174 108 3 63 chr11 24259061 24259408 -97584448 - ORR1A3 LTR MaLR 0 326 1 3 770 833 309 37 0 chr11 24259961 24260178 -97583678 - B4A SINE B4 -67 225 1 3 770 333 311 51 32 chr11 24260264 24260420 -97583436 + MIR SINE MIR 48 206 -56 3 770 1306 224 64 14 chr11 24260546 24260890 -97582966 - ORR1D1 LTR MaLR -2 372 12 3 770 285 339 93 0 chr11 24261621 24261739 -97582117 + MLT1C LTR MaLR 18 146 -481 3 770 344 321 5 0 chr11 24261922 24262041 -97581815 + MLT1C LTR MaLR 368 499 -6 3 770 331 308 149 0 chr11 24263130 24263325 -97580531 - MLT2D LTR ERVL 0 397 174 3 770 353 218 40 10 chr11 24263347 24263442 -97580414 - MLT2D LTR ERVL -452 104 11 3 770 225 338 62 14 chr11 24264889 24265033 -97578823 + MIR SINE MIR 112 262 0 3 770 429 20 0 0 chr11 24265152 24265202 -97578654 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 770 306 0 0 0 chr11 24265335 24265369 -97578487 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 3 770 288 318 30 60 chr11 24266058 24266192 -97577664 - MIRc SINE MIR -67 201 72 3 770 410 288 126 35 chr11 24266208 24266406 -97577450 - MIR SINE MIR -19 243 28 3 770 31 26 0 0 chr11 24268044 24268082 -97575774 + AT_rich Low_complexity Low_complexity 1 38 0 3 770 183 42 0 0 chr11 24268103 24268127 -97575729 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 770 494 297 25 31 chr11 24268149 24268312 -97575544 - RSINE1 SINE B4 0 165 4 3 770 357 348 43 5 chr11 24269222 24269407 -97574449 + MIRb SINE MIR 5 196 -72 3 770 582 282 171 11 chr11 24274112 24274399 -97569457 + MER2 DNA MER2_type 6 338 -7 3 770 181 338 26 0 chr11 24274427 24274504 -97569352 - MIRb SINE MIR -73 195 117 3 770 318 336 15 38 chr11 24277332 24277465 -97566391 + MIR3 SINE MIR 76 205 -3 3 770 1983 305 72 57 chr11 24278101 24279062 -97564794 - L1MC3 LINE L1 -243 7542 6578 3 770 279 0 0 0 chr11 24279062 24279093 -97564763 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 770 1983 305 72 57 chr11 24279093 24279333 -97564523 - L1MC3 LINE L1 -1208 6577 6322 3 770 274 274 9 95 chr11 24279534 24279639 -97564217 + MT2B2 LTR ERVL 146 241 -343 3 770 496 248 0 0 chr11 24279560 24279660 -97564196 + PB1D10 SINE Alu 5 104 -13 3 770 342 0 0 0 chr11 24279660 24279698 -97564158 + (CAAAC)n Simple_repeat Simple_repeat 1 38 0 3 770 496 248 0 0 chr11 24279698 24279710 -97564146 + PB1D10 SINE Alu 105 116 -1 3 770 865 83 0 58 chr11 24279785 24279976 -97563880 + (CAAAC)n Simple_repeat Simple_repeat 1 180 0 3 770 1063 281 83 43 chr11 24280019 24280488 -97563368 - L1MC3 LINE L1 -321 6023 5536 3 770 549 156 0 0 chr11 24280551 24280647 -97563209 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 770 27 49 0 0 chr11 24280647 24280688 -97563168 + AT_rich Low_complexity Low_complexity 1 41 0 3 770 216 195 49 0 chr11 24280688 24280770 -97563086 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 770 21 57 0 0 chr11 24280878 24280913 -97562943 + AT_rich Low_complexity Low_complexity 1 35 0 3 770 190 95 48 0 chr11 24280915 24280957 -97562899 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 770 289 297 42 0 chr11 24280959 24281124 -97562732 - L1MC3 LINE L1 -878 5466 5295 3 770 251 161 31 46 chr11 24281130 24281195 -97562661 - B1F SINE Alu 0 149 86 3 770 296 209 0 15 chr11 24281137 24281205 -97562651 - ID_B1 SINE B4 -4 220 154 3 770 815 268 101 8 chr11 24281205 24281502 -97562354 + ORR1D1 LTR MaLR 1 353 -6 3 770 336 275 0 0 chr11 24281514 24281583 -97562273 - ID_B1 SINE B4 -75 149 81 3 770 231 309 40 20 chr11 24281518 24281617 -97562239 + YREP_Mm Unknown Unknown 253 353 -1459 3 770 780 268 140 16 chr11 24281901 24282216 -97561640 - RMER5 LTR ERV1 -9 525 172 3 770 252 204 41 0 chr11 24282244 24282293 -97561563 + MTD LTR MaLR 48 98 -321 3 770 639 237 0 0 chr11 24282301 24282440 -97561416 - B1_Mm SINE Alu -6 141 3 3 770 198 71 0 0 chr11 24282596 24282624 -97561232 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 770 311 279 0 0 chr11 24282645 24282724 -97561132 - Lx7 LINE L1 -481 7215 7137 3 770 3232 106 4 11 chr11 24282747 24283214 -97560642 - L1_Mm LINE L1 -106 5777 5314 3 770 8843 94 14 2 chr11 24283215 24285277 -97558579 - L1VL4 LINE L1 -1471 2088 1 3 770 321 344 36 21 chr11 24285278 24285471 -97558385 - L1MCb LINE L1 -5446 1305 1110 3 770 250 298 142 26 chr11 24286343 24286498 -97557358 - L1MCb LINE L1 -5419 626 454 3 770 23 0 0 0 chr11 24286532 24286555 -97557301 + AT_rich Low_complexity Low_complexity 1 23 0 3 770 603 353 10 17 chr11 24286684 24286975 -97556881 - L1MCb LINE L1 -5617 428 140 3 770 481 99 25 0 chr11 24286991 24287072 -97556784 + (GA)n Simple_repeat Simple_repeat 1 83 0 3 770 1667 169 21 53 chr11 24288814 24289025 -97554831 + ORR1D1 LTR MaLR 1 212 -162 3 770 3208 174 142 78 chr11 24289025 24289873 -97553983 - RMER19B LTR ERVK 0 902 1 3 770 1667 169 21 53 chr11 24289873 24290041 -97553815 + ORR1D1 LTR MaLR 213 368 -6 3 770 196 211 14 14 chr11 24290083 24290155 -97553701 + CT-rich Low_complexity Low_complexity 3 74 0 3 770 355 271 91 27 chr11 24291762 24291948 -97551908 + MIRb SINE MIR 57 254 -14 3 770 8513 127 32 21 chr11 24292848 24294794 -97549062 + L1Md_F LINE L1 425 2392 -1425 3 770 2921 54 3 0 chr11 24294794 24295148 -97548708 + L1_Mus2 LINE L1 5966 6320 -246 3 770 252 122 0 0 chr11 24295347 24295388 -97548468 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 3 770 358 264 132 0 chr11 24296435 24296556 -97547300 + MLT1B LTR MaLR 2 138 -252 3 770 400 194 0 0 chr11 24296554 24296626 -97547230 + MLT1B LTR MaLR 303 374 -16 3 770 1071 244 110 14 chr11 24296626 24296971 -97546885 + MTEb LTR MaLR 1 378 -1 3 770 388 186 11 85 chr11 24296971 24296992 -97546864 + MLT1B LTR MaLR 359 374 0 3 770 189 0 0 0 chr11 24297403 24297424 -97546432 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 770 216 200 0 0 chr11 24297993 24298043 -97545813 + CT-rich Low_complexity Low_complexity 2 51 0 3 770 241 158 0 70 chr11 24298433 24298562 -97545294 + (CAGAGA)n Simple_repeat Simple_repeat 4 123 0 3 770 287 321 132 0 chr11 24299087 24299193 -97544663 + B1F SINE Alu 3 122 -27 3 770 378 0 0 0 chr11 24299481 24299523 -97544333 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 770 378 0 0 0 chr11 24299523 24299564 -97544292 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 770 196 311 173 8 chr11 24299967 24300100 -97543756 + MIR SINE MIR 82 236 -26 3 770 575 94 0 10 chr11 24300192 24300289 -97543567 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 770 1711 161 54 70 chr11 24301805 24302178 -97541678 + ORR1B2 LTR MaLR 1 367 0 3 770 395 347 78 0 chr11 24302268 24302487 -97541369 - MIR SINE MIR -20 242 9 3 770 24 0 0 0 chr11 24303023 24303047 -97540809 + AT_rich Low_complexity Low_complexity 1 24 0 3 770 776 231 10 62 chr11 24303492 24303700 -97540156 - B3A SINE B2 -15 201 5 3 770 21 0 0 0 chr11 24303870 24303891 -97539965 + AT_rich Low_complexity Low_complexity 1 21 0 3 770 222 37 0 0 chr11 24303924 24303951 -97539905 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 770 213 175 0 0 chr11 24303951 24303991 -97539865 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 770 218 200 0 0 chr11 24304076 24304126 -97539730 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 770 563 264 84 51 chr11 24304128 24304480 -97539376 + RLTR16 LTR ERVK 32 433 -259 3 770 450 0 0 0 chr11 24304668 24304718 -97539138 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 770 21 71 0 0 chr11 24306247 24306289 -97537567 + AT_rich Low_complexity Low_complexity 1 42 0 3 770 1369 232 40 115 chr11 24306891 24307344 -97536512 + MTD LTR MaLR 1 419 0 3 770 190 289 138 46 chr11 24307687 24307861 -97535995 - MIR SINE MIR -71 191 2 3 770 308 284 27 18 chr11 24308053 24308164 -97535692 + PB1D9 SINE Alu 9 120 0 3 770 237 213 21 0 chr11 24308169 24308216 -97535640 + GA-rich Low_complexity Low_complexity 2 49 0 3 770 225 309 0 0 chr11 24308244 24308312 -97535544 + L2a LINE L2 3359 3426 0 3 770 279 0 0 0 chr11 24309820 24309851 -97534005 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 770 807 89 0 16 chr11 24309853 24309978 -97533878 - B1_Mm SINE Alu 0 147 25 4 770 1169 170 48 9 chr11 24310177 24310408 -97533448 - MTC LTR MaLR 0 421 182 4 770 4896 104 6 10 chr11 24310409 24310980 -97532876 - L1_Mm LINE L1 -19 5864 5293 4 770 3330 32 25 0 chr11 24310980 24311381 -97532475 + RLTR10A LTR ERVK 1 411 0 4 770 4896 104 6 10 chr11 24311381 24311508 -97532348 - L1_Mm LINE L1 -591 5292 5169 4 770 5509 84 11 15 chr11 24311508 24312254 -97531602 + L1_Mus3 LINE L1 5880 6622 -16 4 770 387 0 0 0 chr11 24312254 24312297 -97531559 + (TAA)n Simple_repeat Simple_repeat 1 43 0 4 770 881 157 78 0 chr11 24312297 24312463 -97531393 - MTC LTR MaLR -233 188 10 4 770 21 57 0 0 chr11 24312615 24312650 -97531206 + AT_rich Low_complexity Low_complexity 1 35 0 4 770 274 206 94 164 chr11 24312794 24312922 -97530934 - MTEa LTR MaLR -33 346 228 4 770 216 161 0 69 chr11 24313263 24313350 -97530506 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 770 256 348 177 35 chr11 24313467 24313902 -97529954 + MLT1F2 LTR MaLR 1 497 -63 4 770 228 88 53 0 chr11 24315081 24315138 -97528718 + (TTTTTG)n Simple_repeat Simple_repeat 4 63 0 4 770 27 29 0 0 chr11 24315372 24315406 -97528450 + AT_rich Low_complexity Low_complexity 1 34 0 4 770 793 282 139 45 chr11 24315465 24315741 -97528115 + MTD LTR MaLR 13 303 -76 4 770 279 54 0 0 chr11 24315741 24315778 -97528078 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 4 770 386 276 160 57 chr11 24315778 24315844 -97528012 + MTD LTR MaLR 304 366 -13 4 770 1404 165 117 25 chr11 24317822 24318146 -97525710 + ORR1B1 LTR MaLR 41 394 0 4 770 292 333 37 15 chr11 24318882 24319016 -97524840 - MER5A DNA MER1_type -36 153 17 4 770 284 323 55 24 chr11 24319240 24319367 -97524489 - MIR3 SINE MIR -6 202 72 4 770 227 243 67 133 chr11 24319397 24319592 -97524264 - MIR SINE MIR -7 255 74 4 770 191 259 19 0 chr11 24319889 24319943 -97523913 + L2c LINE L2 3036 3090 -297 4 770 231 281 108 59 chr11 24321753 24321855 -97522001 - MIR3 SINE MIR -19 189 83 4 770 315 0 0 0 chr11 24323757 24323792 -97520064 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 770 584 284 20 49 chr11 24324536 24324740 -97519116 + B3A SINE B2 1 198 0 4 770 232 120 20 20 chr11 24325295 24325346 -97518510 + CT-rich Low_complexity Low_complexity 3 53 0 4 770 299 320 89 39 chr11 24325739 24325918 -97517938 + MLT1E1A LTR MaLR 2 189 -491 4 770 270 321 72 36 chr11 24326103 24326242 -97517614 + MLT1E1A LTR MaLR 432 575 -78 4 770 681 208 0 0 chr11 24329432 24329557 -97514299 + B1_Mus1 SINE Alu 11 135 -13 4 770 7519 63 30 17 chr11 24329603 24331310 -97512546 - L1_Mus3 LINE L1 -34 6604 5681 4 770 3614 49 7 0 chr11 24331310 24331756 -97512100 + L1Md_F2 LINE L1 6134 6582 0 4 770 7519 114 7 17 chr11 24331756 24332343 -97511513 - L1_Mus3 LINE L1 -203 5680 5092 4 770 4779 132 25 3 chr11 24332334 24333523 -97510333 - L1VL2 LINE L1 -2185 1430 1 4 770 238 186 0 0 chr11 24333491 24333534 -97510322 - L1VL1 LINE L1 -6186 236 194 4 770 224 203 26 51 chr11 24333548 24333626 -97510230 + GA-rich Low_complexity Low_complexity 3 78 0 4 770 1731 196 50 63 chr11 24333628 24334010 -97509846 + ORR1C1 LTR MaLR 2 378 0 4 770 1103 214 28 5 chr11 24334705 24334916 -97508940 - B3 SINE B2 0 216 1 4 770 384 354 60 22 chr11 24335527 24335805 -97508051 + MER2 DNA MER2_type 3 313 -32 4 770 324 150 25 12 chr11 24335956 24336037 -97507819 + GA-rich Low_complexity Low_complexity 4 85 0 4 770 771 216 0 20 chr11 24336071 24336222 -97507634 - B1_Mur2 SINE Alu 0 149 2 4 770 774 158 104 15 chr11 24336840 24336975 -97506881 + B1_Mus2 SINE Alu 1 147 0 4 770 189 0 0 0 chr11 24337849 24337870 -97505986 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 770 347 340 9 28 chr11 24339095 24339201 -97504655 - RSINE1 SINE B4 -4 161 58 4 770 284 312 144 57 chr11 24339236 24339902 -97503954 - L1MC4a LINE L1 -2 8040 7317 4 770 389 344 90 45 chr11 24340335 24340691 -97503165 - L1MC4a LINE L1 -1115 6927 6524 4 770 820 185 0 7 chr11 24340691 24340827 -97503029 - B1_Mur2 SINE Alu -13 136 2 4 770 295 342 93 46 chr11 24340827 24341145 -97502711 - L1MC4a LINE L1 -1359 6523 6200 4 770 412 357 72 44 chr11 24341285 24341604 -97502252 - L1MC4a LINE L1 -1816 6066 5739 4 770 945 311 59 30 chr11 24341610 24341948 -97501908 + MTD LTR MaLR 13 360 -59 4 770 463 302 156 13 chr11 24342128 24342366 -97501490 + B4A SINE B4 3 274 -18 4 770 357 82 0 0 chr11 24342770 24342819 -97501037 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 770 210 71 0 0 chr11 24342819 24342847 -97501009 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 770 910 252 59 5 chr11 24342889 24343092 -97500764 + B3 SINE B2 3 216 0 4 770 2468 213 42 131 chr11 24343245 24343916 -97499940 + RMER19C LTR ERVK 1 611 0 4 770 602 279 134 20 chr11 24344277 24344478 -97499378 - ID_B1 SINE B4 0 224 1 4 770 1486 103 50 23 chr11 24344571 24344790 -97499066 + URR1A DNA MER1_type 2 226 0 4 770 41 72 0 0 chr11 24345063 24345146 -97498710 + AT_rich Low_complexity Low_complexity 1 83 0 4 770 260 315 11 11 chr11 24345228 24345318 -97498538 - MLT2F LTR ERVL -57 606 517 4 770 280 367 99 28 chr11 24345353 24345535 -97498321 - MLT2F LTR ERVL -225 438 244 4 770 294 249 37 58 chr11 24345580 24345692 -97498164 + B1F2 SINE Alu 19 127 -20 4 770 424 338 82 16 chr11 24345833 24346209 -97497647 - L1MEe LINE L1 -4447 407 7 4 770 1179 74 0 0 chr11 24346684 24346860 -97496996 + (GA)n Simple_repeat Simple_repeat 2 177 0 4 770 193 197 0 32 chr11 24347459 24347522 -97496334 + GA-rich Low_complexity Low_complexity 3 63 0 4 770 1210 275 110 41 chr11 24349541 24350087 -97493769 + L1MB3 LINE L1 4888 5478 -693 4 770 231 36 0 0 chr11 24350087 24350115 -97493741 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 770 1210 265 84 69 chr11 24350115 24350444 -97493412 + L1MB3 LINE L1 5479 5801 -370 4 770 410 242 24 24 chr11 24350473 24350630 -97493226 - B3 SINE B2 0 216 1 4 770 1136 264 39 17 chr11 24350647 24351002 -97492854 + L1MB3 LINE L1 5818 6180 -3 4 770 219 288 179 26 chr11 24351064 24351180 -97492676 + MIRb SINE MIR 47 174 -88 4 770 228 265 53 114 chr11 24351327 24351459 -97492397 - MIR SINE MIR -68 140 17 4 770 285 98 0 0 chr11 24352207 24352248 -97491608 + (TGG)n Simple_repeat Simple_repeat 1 41 0 4 770 2215 161 3 3 chr11 24352973 24353321 -97490535 + ORR1B1 LTR MaLR 47 394 0 4 770 183 248 71 3 chr11 24353454 24353503 -97490353 - MIR SINE MIR -158 110 60 4 770 28 0 0 0 chr11 24354730 24354758 -97489098 + AT_rich Low_complexity Low_complexity 1 28 0 4 770 333 102 0 0 chr11 24355528 24355587 -97488269 + (CCAA)n Simple_repeat Simple_repeat 1 59 0 4 770 198 0 0 0 chr11 24355587 24355609 -97488247 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 770 1003 86 29 0 chr11 24356181 24356355 -97487501 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 4 770 207 100 0 0 chr11 24356355 24356385 -97487471 + (CCTA)n Simple_repeat Simple_repeat 3 32 0 4 770 10360 108 7 3 chr11 24357480 24359747 -97484109 - L1_Mus3 LINE L1 -7 6631 4349 4 770 4709 12 0 2 chr11 24359747 24360241 -97483615 - MT2_Mm LTR ERVL 0 493 1 4 770 10360 118 10 4 chr11 24360241 24360262 -97483594 - L1_Mus3 LINE L1 -1535 4348 4332 4 770 4480 127 39 31 chr11 24360260 24361685 -97482171 - L1VL1 LINE L1 -2049 1649 210 4 770 1239 268 97 87 chr11 24361946 24362401 -97481455 + MTD-int LTR MaLR 581 1024 -234 4 770 1264 130 11 0 chr11 24362401 24362578 -97481278 - B2_Mm2 SINE B2 -15 180 2 4 770 1239 268 97 87 chr11 24362578 24362791 -97481065 + MTD-int LTR MaLR 1025 1256 -2 4 770 1589 240 141 3 chr11 24362793 24363161 -97480695 + MTD LTR MaLR 1 419 0 4 770 234 91 0 0 chr11 24363541 24363574 -97480282 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 770 568 26 13 13 chr11 24363575 24363654 -97480202 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 770 249 264 117 43 chr11 24365079 24365241 -97478615 + MIR SINE MIR 58 231 -31 4 770 972 86 19 0 chr11 24365852 24366014 -97477842 + (CA)n Simple_repeat Simple_repeat 1 165 0 4 770 207 136 51 0 chr11 24366026 24366085 -97477771 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 770 244 177 32 0 chr11 24366872 24366934 -97476922 + (CAA)n Simple_repeat Simple_repeat 2 65 0 4 770 219 226 204 19 chr11 24368595 24368649 -97475207 + ID4_ SINE ID 8 71 -12 4 770 196 314 66 38 chr11 24368859 24368965 -97474891 + L4 LINE RTE 1001 1109 -920 4 770 4272 63 4 2 chr11 24369407 24369917 -97473939 - L1_Mus1 LINE L1 -1 6566 6056 4 770 342 0 0 0 chr11 24373258 24373296 -97470560 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 770 763 291 116 46 chr11 24375170 24375380 -97468476 - L1MD3 LINE L1 -10 7985 7763 4 770 258 32 0 0 chr11 24375380 24375411 -97468445 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4 770 763 291 116 46 chr11 24375411 24375726 -97468130 - L1MD3 LINE L1 -233 7762 7423 4 770 283 336 85 15 chr11 24376113 24376243 -97467613 - MLT1A1 LTR MaLR -14 394 256 4 770 188 376 58 46 chr11 24377706 24377965 -97465891 + L2 LINE L2 854 1115 -2304 4 770 403 321 91 36 chr11 24378219 24378384 -97465472 - MER96 DNA hAT -1 174 1 4 771 233 297 14 0 chr11 24379873 24379947 -97463909 + MIR3 SINE MIR 117 191 -17 4 771 231 400 24 14 chr11 24381116 24381324 -97462532 + L3b LINE CR1 210 419 -63 4 771 519 17 0 0 chr11 24382069 24382129 -97461727 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 771 228 86 0 0 chr11 24383841 24383876 -97459980 + (T)n Simple_repeat Simple_repeat 1 35 0 4 771 258 375 45 19 chr11 24384486 24384641 -97459215 + MER91A DNA Tip100 38 196 0 4 771 195 301 133 19 chr11 24386429 24386534 -97457322 + L2b LINE L2 3251 3367 -8 4 771 369 0 0 0 chr11 24388079 24388120 -97455736 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 771 735 257 89 13 chr11 24388894 24388919 -97454937 + ORR1E LTR MaLR 42 71 -288 4 771 2277 120 3 0 chr11 24388919 24389244 -97454612 - ORR1A2 LTR MaLR 0 327 2 4 771 735 263 92 21 chr11 24389244 24389489 -97454367 + ORR1E LTR MaLR 66 349 -30 4 771 6453 97 40 2 chr11 24389489 24390614 -97453242 - L1_Mus3 LINE L1 -24 6614 5447 4 771 6638 78 18 31 chr11 24390620 24391235 -97452621 - L1_Mus2 LINE L1 0 6566 5962 4 771 1084 110 0 0 chr11 24391235 24391381 -97452475 - B1_Mus2 SINE Alu 0 147 2 4 771 22430 113 13 5 chr11 24391381 24395094 -97448762 - L1_Mus2 LINE L1 -605 5961 2223 4 771 2767 78 35 5 chr11 24395097 24395497 -97448359 - L1Md_F2 LINE L1 -33 6549 6138 4 771 6643 119 11 25 chr11 24395497 24396597 -97447259 - L1VL1 LINE L1 -5314 1108 24 5 771 306 164 18 0 chr11 24396598 24396653 -97447203 + ORR1E LTR MaLR 350 405 -14 4 771 4282 58 0 0 chr11 24396655 24397239 -97446617 - L1_Mm LINE L1 -1860 4023 3440 5 771 369 77 0 0 chr11 24397236 24397288 -97446568 - L1_Mm LINE L1 -3487 2396 2345 5 771 11702 64 0 2 chr11 24397286 24398865 -97444991 + L1Md_F2 LINE L1 4011 5586 -297 5 771 7887 52 10 5 chr11 24398865 24399855 -97444001 + L1Md_F2 LINE L1 5587 6581 -1 5 771 603 275 102 119 chr11 24400817 24400957 -97442899 - MTEa LTR MaLR -12 367 223 5 771 1055 134 0 6 chr11 24400957 24401137 -97442719 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 5 771 603 275 102 119 chr11 24401137 24401367 -97442489 - MTEa LTR MaLR -157 222 3 5 771 219 69 0 0 chr11 24401496 24401525 -97442331 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 771 382 244 174 0 chr11 24401674 24401789 -97442067 + MIRb SINE MIR 87 221 -47 5 771 474 146 0 0 chr11 24402275 24402357 -97441499 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 771 231 272 0 0 chr11 24402393 24402507 -97441349 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 771 237 328 0 45 chr11 24403622 24403756 -97440100 + CT-rich Low_complexity Low_complexity 1 128 0 5 771 295 241 12 12 chr11 24404666 24404750 -97439106 + CT-rich Low_complexity Low_complexity 2 85 0 5 771 1222 174 83 3 chr11 24405455 24405743 -97438113 - Lx9 LINE L1 -9 7635 7325 5 771 239 240 0 0 chr11 24406099 24406149 -97437707 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 771 659 307 100 8 chr11 24406161 24406420 -97437436 - B4A SINE B4 -9 283 1 5 771 483 18 0 0 chr11 24407848 24407904 -97435952 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 771 204 40 0 0 chr11 24407904 24407928 -97435928 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 771 481 174 9 44 chr11 24407977 24407994 -97435862 - Lx3_Mus LINE L1 -1782 5914 5901 5 771 210 37 0 0 chr11 24407994 24408021 -97435835 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 771 4450 135 64 1 chr11 24408021 24408833 -97435023 - Lx3_Mus LINE L1 -1106 5903 5037 5 771 2911 99 7 0 chr11 24408860 24409285 -97434571 + Lx LINE L1 5935 6362 -292 5 771 333 330 38 0 chr11 24409465 24409571 -97434285 + MER20 DNA MER1_type 109 218 -1 5 771 212 330 33 22 chr11 24410086 24410176 -97433680 - MIR SINE MIR -68 140 50 5 771 621 289 90 19 chr11 24411656 24411868 -97431988 - MIR SINE MIR -11 251 25 5 771 496 321 144 26 chr11 24412900 24413290 -97430566 + L2a LINE L2 2968 3403 -23 5 771 1160 247 114 62 chr11 24413396 24413781 -97430075 - MTD LTR MaLR -14 405 1 5 771 883 266 117 11 chr11 24414070 24414344 -97429512 + RMER1B Other Other 212 514 -552 5 771 2451 209 165 3 chr11 24414361 24414955 -97428901 + RMER1B Other Other 366 1055 -11 5 771 183 80 0 0 chr11 24414962 24414987 -97428869 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 771 696 249 22 33 chr11 24414989 24415172 -97428684 - B3A SINE B2 -17 181 1 5 771 9541 234 59 84 chr11 24417079 24418019 -97425837 + Lx9 LINE L1 1150 2126 -3721 5 771 303 93 0 0 chr11 24418019 24418062 -97425794 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 771 9541 232 60 85 chr11 24418062 24418141 -97425715 + Lx9 LINE L1 2127 2201 -3646 5 771 281 276 0 112 chr11 24418141 24418154 -97425702 + MT2B LTR ERVL 155 156 -445 5 771 541 209 16 57 chr11 24418154 24418276 -97425580 + PB1D9 SINE Alu 4 120 0 5 771 9541 232 60 85 chr11 24418276 24419362 -97424494 + Lx9 LINE L1 2202 3240 -2607 5 771 456 51 0 0 chr11 24419362 24419421 -97424435 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 771 9541 232 60 85 chr11 24419421 24421343 -97422513 + Lx9 LINE L1 3241 5215 -632 5 771 1190 269 132 11 chr11 24421397 24421754 -97422102 - MTD LTR MaLR -8 411 12 5 771 2098 242 66 16 chr11 24421766 24422504 -97421352 + Lx9 LINE L1 5274 6110 -1363 5 771 663 48 0 0 chr11 24422504 24422587 -97421269 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 771 2119 282 98 18 chr11 24422587 24423397 -97420459 + Lx9 LINE L1 6111 7137 -507 5 771 29703 109 20 8 chr11 24423478 24427495 -97416361 + L1_Mus1 LINE L1 387 4487 -1396 5 771 4384 20 0 0 chr11 24427495 24427988 -97415868 + MT2_Mm LTR ERVL 1 493 0 5 771 9066 33 6 1 chr11 24427992 24429083 -97414773 + MTA_Mm-int LTR MaLR 3 1098 0 5 771 3486 15 5 0 chr11 24429083 24429477 -97414379 + MTA_Mm LTR MaLR 1 396 0 5 771 29703 92 9 5 chr11 24429477 24431572 -97412284 + L1_Mus1 LINE L1 4488 6565 -2 5 771 662 266 83 103 chr11 24431596 24431909 -97411947 + Lx9 LINE L1 7196 7511 -133 5 771 201 39 0 0 chr11 24431909 24431935 -97411921 + (TATAA)n Simple_repeat Simple_repeat 2 27 0 5 771 662 266 83 103 chr11 24431935 24432057 -97411799 + Lx9 LINE L1 7512 7622 -22 5 771 958 303 85 22 chr11 24432294 24432460 -97411396 + MLT2B1 LTR ERVL 2 165 -355 5 771 2201 170 50 5 chr11 24432460 24432862 -97410994 - MTC LTR MaLR 0 421 2 5 771 958 292 33 8 chr11 24432862 24433099 -97410757 + MLT2B1 LTR ERVL 166 518 -44 5 771 343 368 74 77 chr11 24433107 24433443 -97410413 + ORR1E LTR MaLR 14 348 -11 5 771 456 19 0 0 chr11 24433461 24433514 -97410342 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 771 327 135 0 19 chr11 24433853 24433906 -97409950 - HAL1-3A_ME LINE L1 -831 2027 1976 5 771 357 174 0 0 chr11 24433913 24433982 -97409874 + (TATG)n Simple_repeat Simple_repeat 4 72 0 5 771 313 227 325 0 chr11 24433999 24434113 -97409743 - RSINE1 SINE B4 0 165 15 5 771 285 330 84 26 chr11 24434870 24435215 -97408641 - L1ME2z LINE L1 -323 6121 5757 5 771 338 244 46 30 chr11 24435327 24435458 -97408398 - L1ME2z LINE L1 -413 5766 5634 5 771 490 285 25 8 chr11 24435501 24435645 -97408211 + MIRb SINE MIR 22 170 -106 5 771 506 291 65 106 chr11 24436280 24436594 -97407262 - ORR1E LTR MaLR -11 363 28 5 771 1014 54 0 0 chr11 24437267 24437396 -97406460 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 5 771 221 300 17 0 chr11 24437876 24437936 -97405920 - MIR SINE MIR -76 132 72 5 771 1304 234 71 36 chr11 24438858 24439222 -97404634 + MTEa LTR MaLR 1 377 -2 5 771 1061 282 111 13 chr11 24439351 24439739 -97404117 - Zaphod DNA Tip100 -10 4021 3596 5 771 1580 306 70 35 chr11 24439738 24440397 -97403459 - Zaphod DNA Tip100 -3041 990 306 5 771 228 67 0 0 chr11 24440397 24440427 -97403429 + (CAG)n Simple_repeat Simple_repeat 3 32 0 5 771 1580 306 70 35 chr11 24440427 24440486 -97403370 - Zaphod DNA Tip100 -3726 305 247 5 771 821 331 34 20 chr11 24440773 24441069 -97402787 - RMER15 LTR ERVL -2 573 274 5 771 782 48 10 0 chr11 24441306 24441409 -97402447 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 5 771 1384 256 44 9 chr11 24441424 24441744 -97402112 + ORR1D1 LTR MaLR 1 331 -43 5 771 2037 171 24 21 chr11 24442195 24442572 -97401284 + ORR1C1 LTR MaLR 1 378 0 5 771 1014 266 174 6 chr11 24442792 24443114 -97400742 - MLT2B4 LTR ERVL -180 376 1 5 771 2184 90 7 7 chr11 24443896 24444198 -97399658 - L1_Mus3 LINE L1 -6 6632 6331 5 771 5707 67 0 0 chr11 24444198 24444981 -97398875 + L1_Mus3 LINE L1 5555 6337 -301 5 771 2824 114 0 5 chr11 24444985 24445409 -97398447 - L1_Mus4 LINE L1 -2 6634 6213 5 771 350 58 0 0 chr11 24445409 24445455 -97398401 + L1_Mm LINE L1 4166 4211 -1672 5 771 293 324 48 75 chr11 24445460 24445647 -97398209 - B3A SINE B2 -7 188 7 5 771 515 201 75 0 chr11 24445639 24445798 -97398058 - RMER6A LTR ERVK -304 452 282 5 771 300 215 279 5 chr11 24445832 24446033 -97397823 - RMER6A LTR ERVK -259 461 206 5 771 1427 125 5 0 chr11 24446313 24446521 -97397335 - RMER6A LTR ERVK -547 209 1 5 771 198 259 0 65 chr11 24448258 24448320 -97395536 - L2b LINE L2 0 3375 3318 5 771 186 234 29 59 chr11 24448454 24448522 -97395334 + MIRb SINE MIR 137 202 -66 5 771 328 298 37 2 chr11 24448758 24448854 -97395002 - PB1D10 SINE Alu -2 125 21 5 771 180 0 0 0 chr11 24448994 24449014 -97394842 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 5 771 265 203 40 26 chr11 24449258 24449334 -97394522 + L1M4b LINE L1 3610 3686 -3648 5 771 514 305 99 13 chr11 24449334 24449534 -97394322 + B3A SINE B2 2 202 -14 5 771 302 273 48 24 chr11 24449580 24449745 -97394111 + L1MD LINE L1 2404 2572 -3574 5 771 531 278 86 29 chr11 24451182 24451564 -97392292 - L1MEc LINE L1 -4307 2093 1690 5 771 309 26 0 0 chr11 24451765 24451803 -97392053 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 771 471 229 43 0 chr11 24451951 24452091 -97391765 - L1MEc LINE L1 -5239 1161 1016 5 771 1882 179 96 3 chr11 24452921 24453274 -97390582 + ORR1B1 LTR MaLR 1 386 -8 5 771 318 261 0 0 chr11 24453986 24454051 -97389805 - U6 snRNA snRNA -1 106 42 5 771 507 246 46 101 chr11 24454133 24454228 -97389628 - L1MEc LINE L1 -5424 976 893 5 771 1219 48 0 7 chr11 24454228 24454375 -97389481 - B1_Mus2 SINE Alu -1 146 1 5 771 507 246 46 101 chr11 24454375 24454496 -97389360 - L1MEc LINE L1 -5508 892 772 5 771 1414 272 50 27 chr11 24454501 24455057 -97388799 - Lx6 LINE L1 -8 7452 6506 5 771 386 268 157 8 chr11 24455073 24455226 -97388630 - Lx6 LINE L1 -670 6380 6229 5 771 5202 163 19 74 chr11 24455224 24456518 -97387338 - L1_Mur2 LINE L1 -1785 4095 2874 5 771 1619 181 64 1 chr11 24456538 24457170 -97386686 - L1_Mur2 LINE L1 -4304 1573 892 5 771 370 158 136 7 chr11 24457435 24457560 -97386296 - L1_Mur3 LINE L1 -4601 1285 1153 5 771 3633 260 17 67 chr11 24457587 24458704 -97385152 - RMER1B Other Other -5 1061 1 5 771 927 245 7 28 chr11 24458995 24459281 -97384575 - L1_Mur3 LINE L1 -6561 1167 888 5 771 515 247 84 0 chr11 24459793 24459947 -97383909 - L1MEc LINE L1 -5622 778 612 5 771 1917 175 13 79 chr11 24460479 24460858 -97382998 + ORR1B1 LTR MaLR 41 394 0 5 771 316 102 20 0 chr11 24460858 24460907 -97382949 + ORR1B1-int LTR MaLR 1 50 -1459 5 771 2868 153 37 153 chr11 24460887 24461566 -97382290 + ORR1B1-int LTR MaLR 1364 1963 0 5 771 1547 161 28 117 chr11 24461568 24461927 -97381929 + ORR1B1 LTR MaLR 3 329 0 5 771 23 86 0 0 chr11 24462270 24462328 -97381528 + AT_rich Low_complexity Low_complexity 1 58 0 5 771 564 42 0 0 chr11 24462335 24462406 -97381450 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 771 27580 114 16 11 chr11 24462453 24468663 -97375193 + L1_Mus3 LINE L1 411 6638 0 5 771 702 91 0 0 chr11 24468663 24468762 -97375094 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 5 771 320 0 25 0 chr11 24469398 24469438 -97374418 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 771 358 205 179 0 chr11 24471840 24471918 -97371938 - PB1D10 SINE Alu 0 117 26 5 771 23 0 0 0 chr11 24474781 24474804 -97369052 + AT_rich Low_complexity Low_complexity 1 23 0 5 771 230 250 118 0 chr11 24477229 24477297 -97366559 + L2a LINE L2 3319 3394 -32 5 771 346 329 164 29 chr11 24477949 24478259 -97365597 + L1MEg LINE L1 159 510 -5732 5 771 260 310 121 40 chr11 24478300 24478770 -97365086 + L1MEg LINE L1 575 1082 -5160 5 771 450 288 214 16 chr11 24478998 24479302 -97364554 + L1MEg LINE L1 1423 1786 -4456 5 771 546 298 58 11 chr11 24479315 24479630 -97364226 + Tigger5 DNA MER2_type 2291 2406 0 5 771 367 301 45 28 chr11 24479633 24479811 -97364045 + L1MEg LINE L1 1814 1994 -4172 5 771 1031 112 0 0 chr11 24479828 24479971 -97363885 - B1_Mus1 SINE Alu -5 143 1 5 771 415 349 133 18 chr11 24480358 24480549 -97363307 + L1MEg LINE L1 2304 2514 -3632 5 771 1066 249 94 37 chr11 24480549 24480899 -97362957 - ORR1D2 LTR MaLR 0 370 1 5 771 415 349 133 18 chr11 24480899 24481037 -97362819 + L1MEg LINE L1 2515 2671 -3475 5 771 327 326 62 42 chr11 24481162 24481469 -97362387 + L1MEg LINE L1 2691 3003 -3143 5 771 345 311 114 16 chr11 24481599 24481792 -97362064 + L1MEg LINE L1 3193 3404 -2742 5 771 245 168 0 0 chr11 24481874 24481916 -97361940 + Lx4B LINE L1 6845 6904 -154 5 771 1716 95 4 31 chr11 24481958 24482112 -97361744 + L1_Mus4 LINE L1 6377 6531 -105 5 771 2611 65 30 0 chr11 24482112 24482390 -97361466 + ORR1A1 LTR MaLR 1 278 -68 5 771 192 40 0 0 chr11 24482390 24482415 -97361441 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 771 2611 65 30 0 chr11 24482415 24482472 -97361384 + ORR1A1 LTR MaLR 279 344 -2 5 771 13487 52 23 8 chr11 24482472 24484238 -97359618 + ORR1A1-int LTR MaLR 1 1792 0 5 771 2630 61 0 87 chr11 24484238 24484617 -97359239 + ORR1A1 LTR MaLR 1 346 0 5 771 1716 95 4 31 chr11 24484617 24484721 -97359135 + L1_Mus4 LINE L1 6532 6628 -8 5 771 477 201 98 26 chr11 24484741 24484894 -97358962 + Lx4B LINE L1 6891 7054 -4 5 771 270 149 21 0 chr11 24484978 24485025 -97358831 + U2 snRNA snRNA 1 48 -140 5 771 616 292 70 26 chr11 24485080 24485393 -97358463 - L1MB2 LINE L1 -36 6135 5809 5 771 292 275 38 56 chr11 24485489 24485703 -97358153 - ORR1D1 LTR MaLR -81 278 3 6 771 264 339 0 8 chr11 24485819 24485950 -97357906 - L1MB2 LINE L1 -440 5731 5602 5 771 387 335 51 101 chr11 24485951 24486326 -97357530 - L1MB2 LINE L1 -1856 4287 3932 5 771 235 281 39 8 chr11 24486468 24486597 -97357259 - L1M5 LINE L1 -3624 2522 2390 6 771 231 354 116 14 chr11 24486855 24487001 -97356855 - MER5B DNA MER1_type -1 177 17 6 771 7014 165 38 2 chr11 24487311 24488898 -97354958 - Lx2B LINE L1 -4 6996 5351 6 771 288 0 0 0 chr11 24488922 24488954 -97354902 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 6 771 5317 133 25 2 chr11 24488968 24489806 -97354050 - Lx3B LINE L1 -3 6970 6114 6 771 4105 97 46 15 chr11 24489806 24490656 -97353200 + Lx3B LINE L1 5248 6117 -856 6 771 37979 29 2 6 chr11 24490677 24496999 -97346857 - L1Md_T LINE L1 -1 6581 293 6 771 11054 155 35 27 chr11 24496999 24497073 -97346783 - L1_Mur2 LINE L1 -517 5360 5290 6 771 2878 68 0 0 chr11 24497073 24497442 -97346414 - L1_Mus1 LINE L1 -2 6565 6197 6 771 11054 155 35 27 chr11 24497442 24498836 -97345020 - L1_Mur2 LINE L1 -588 5289 3876 6 771 2442 55 25 9 chr11 24498836 24499163 -97344693 + L1_Mus1 LINE L1 6230 6561 -6 6 771 11054 155 35 27 chr11 24499163 24500000 -97343856 - L1_Mur2 LINE L1 -2002 3875 3035 6 771 9406 164 34 4 chr11 24500000 24502129 -97341727 - L1VL4 LINE L1 -2843 3043 865 1 771 241 209 45 0 chr11 24502531 24502598 -97341258 - L1MEc LINE L1 -4061 2339 2270 2 771 705 335 68 23 chr11 24503357 24504205 -97339651 + L1M5 LINE L1 4569 5459 -985 3 771 1301 204 122 49 chr11 24504205 24504550 -97339306 + ORR1D1 LTR MaLR 1 370 -4 4 771 306 287 41 27 chr11 24504550 24504583 -97339273 + L1M5 LINE L1 5460 5495 -949 3 771 243 290 39 52 chr11 24504982 24505135 -97338721 - MLT1E2 LTR MaLR 0 627 355 5 771 446 278 75 75 chr11 24505239 24505426 -97338430 - MLT1E2 LTR MaLR -440 187 1 5 771 236 229 23 35 chr11 24505440 24505526 -97338330 + CT-rich Low_complexity Low_complexity 2 86 0 6 771 3684 148 81 50 chr11 24507972 24508940 -97334916 - RMER17B LTR ERVK 0 958 1 7 771 278 277 103 34 chr11 24510153 24510299 -97333557 + RSINE1 SINE B4 1 156 -9 8 771 272 65 0 42 chr11 24510385 24510433 -97333423 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 9 772 464 249 128 15 chr11 24510578 24510782 -97333074 - MER2 DNA MER2_type -19 326 100 1 772 403 271 50 12 chr11 24511067 24511228 -97332628 + L1M5 LINE L1 3026 3192 -2954 1 772 402 356 46 57 chr11 24511309 24511337 -97332519 + ORR1E LTR MaLR 7 30 -329 1 772 3363 56 0 0 chr11 24511337 24511733 -97332123 + MTA_Mm LTR MaLR 1 396 0 1 772 8498 58 15 6 chr11 24511733 24512822 -97331034 + MTA_Mm-int LTR MaLR 1 1098 0 1 772 3424 48 0 0 chr11 24512822 24513218 -97330638 + MTA_Mm LTR MaLR 1 396 0 1 772 402 356 46 57 chr11 24513218 24513538 -97330318 + ORR1E LTR MaLR 31 351 -8 1 772 213 276 0 17 chr11 24514174 24514233 -97329623 + CT-rich Low_complexity Low_complexity 5 62 0 1 772 382 54 0 0 chr11 24514800 24514856 -97329000 + Lx LINE L1 6593 6648 -6 1 772 348 24 0 0 chr11 24515351 24515392 -97328464 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 772 324 0 0 0 chr11 24515805 24515841 -97328015 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 772 393 58 0 0 chr11 24515900 24515952 -97327904 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1 772 514 275 8 8 chr11 24516110 24516231 -97327625 + B3A SINE B2 2 122 -76 1 772 180 0 0 0 chr11 24516616 24516636 -97327220 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 2 772 321 366 0 0 chr11 24516647 24516759 -97327097 - RSINE1 SINE B4 -41 124 13 2 772 603 324 48 0 chr11 24516794 24517004 -97326852 - MER58A DNA MER1_type -1 223 4 2 772 468 0 0 0 chr11 24517660 24517712 -97326144 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2 772 22 56 0 0 chr11 24519058 24519094 -97324762 + AT_rich Low_complexity Low_complexity 1 36 0 2 772 264 242 70 50 chr11 24519851 24519951 -97323905 - RMER17B LTR ERVK 0 958 857 2 772 1416 207 111 70 chr11 24520060 24521031 -97322825 - RMER17B LTR ERVK -174 784 1 2 772 180 0 0 0 chr11 24521277 24521297 -97322559 + (CATATA)n Simple_repeat Simple_repeat 3 22 0 2 772 475 215 11 17 chr11 24521301 24521476 -97322380 + (TA)n Simple_repeat Simple_repeat 1 174 0 2 772 734 200 64 3 chr11 24521721 24522028 -97321828 + ORR1D1 LTR MaLR 1 374 0 2 772 4140 89 2 5 chr11 24522740 24523295 -97320561 - L1_Mus1 LINE L1 0 6567 6015 2 772 279 0 0 0 chr11 24524978 24525009 -97318847 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 772 192 111 0 0 chr11 24525766 24525802 -97318054 + (T)n Simple_repeat Simple_repeat 1 36 0 3 772 284 261 11 74 chr11 24526812 24526907 -97316949 - PB1 SINE Alu -2 125 37 3 772 5624 122 63 25 chr11 24527721 24528644 -97315212 + RMER17B LTR ERVK 1 958 0 3 772 284 327 40 0 chr11 24529701 24529802 -97314054 - LFSINE_Vert SINE SINE -312 147 43 3 772 396 59 0 0 chr11 24532462 24532513 -97311343 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 772 183 146 0 0 chr11 24532690 24532731 -97311125 + (A)n Simple_repeat Simple_repeat 1 41 0 3 772 581 248 58 0 chr11 24533356 24533493 -97310363 + B1_Mur4 SINE Alu 1 145 -5 3 772 528 16 0 0 chr11 24533496 24533557 -97310299 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 772 191 318 0 0 chr11 24533798 24533861 -97309995 - MIRb SINE MIR -76 192 130 3 772 23 0 0 0 chr11 24534443 24534466 -97309390 + AT_rich Low_complexity Low_complexity 1 23 0 4 772 333 0 0 0 chr11 24534547 24534584 -97309272 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 772 474 18 0 0 chr11 24534584 24534638 -97309218 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 772 285 318 4 11 chr11 24534829 24534937 -97308919 - MIRb SINE MIR -62 200 91 4 772 586 256 23 0 chr11 24536284 24536456 -97307400 + MER53 DNA hAT 12 187 -6 4 772 536 321 104 67 chr11 24537136 24537412 -97306444 + MLT1C LTR MaLR 68 345 -122 4 772 864 287 48 62 chr11 24537412 24537769 -97306087 + ORR1E LTR MaLR 4 355 -4 4 772 536 321 104 67 chr11 24537769 24537866 -97305990 + MLT1C LTR MaLR 346 455 -12 4 772 550 330 8 60 chr11 24538024 24538259 -97305597 - MER58A DNA MER1_type 0 224 2 4 772 230 368 34 6 chr11 24538324 24538499 -97305357 + MARNA DNA Mariner 182 361 -225 4 772 314 337 10 0 chr11 24540515 24540613 -97303243 - MER58A DNA MER1_type -125 99 1 4 772 259 330 58 0 chr11 24540664 24540767 -97303089 + PB1D10 SINE Alu 1 109 -8 5 772 542 54 14 0 chr11 24542202 24542276 -97301580 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 5 772 738 159 75 8 chr11 24542279 24542412 -97301444 - B1_Mus2 SINE Alu -1 146 5 5 772 437 289 87 12 chr11 24542446 24542607 -97301249 - Lx5 LINE L1 -5 7045 6873 5 772 303 28 0 0 chr11 24544069 24544105 -97299751 + (A)n Simple_repeat Simple_repeat 1 36 0 5 772 220 336 25 106 chr11 24544991 24545151 -97298705 + B4A SINE B4 3 149 -143 5 772 2265 222 42 0 chr11 24545233 24545684 -97298172 - RMER1C Other Other -206 1136 667 5 772 824 205 47 38 chr11 24545685 24545898 -97297958 + RMER1C Other Other 1128 1342 0 5 772 1023 122 0 7 chr11 24545906 24546043 -97297813 + B1_Mus1 SINE Alu 1 137 -11 5 772 207 0 0 0 chr11 24546043 24546066 -97297790 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 772 221 318 30 0 chr11 24546240 24546306 -97297550 - ID4 SINE ID -4 79 12 6 772 234 327 19 9 chr11 24547391 24547499 -97296357 + L1MC4 LINE L1 7461 7569 -473 6 772 333 0 0 0 chr11 24549432 24549469 -97294387 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 772 188 135 27 0 chr11 24549934 24549971 -97293885 + CT-rich Low_complexity Low_complexity 1 38 0 6 772 798 238 42 11 chr11 24550981 24551172 -97292684 + B3A SINE B2 2 198 0 6 772 30 0 0 0 chr11 24551261 24551291 -97292565 + AT_rich Low_complexity Low_complexity 1 30 0 6 772 462 312 55 14 chr11 24551292 24551438 -97292418 - RSINE1 SINE B4 0 165 14 6 772 474 18 0 0 chr11 24551763 24551818 -97292038 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 772 582 321 78 34 chr11 24552236 24552672 -97291184 - L1MC LINE L1 -321 5803 5354 6 772 454 322 30 44 chr11 24552811 24553081 -97290775 + L2b LINE L2 2263 2528 -891 6 772 243 0 0 0 chr11 24553393 24553420 -97290436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 772 231 380 58 58 chr11 24553668 24553961 -97289895 + MLT1J LTR MaLR 219 511 -1 7 772 206 302 126 6 chr11 24553990 24554173 -97289683 + L2b LINE L2 2931 3135 -240 6 772 305 366 11 0 chr11 24554469 24554652 -97289204 + MIR SINE MIR 78 262 0 7 772 234 266 64 9 chr11 24555403 24555513 -97288343 + MIRc SINE MIR 152 267 -1 7 772 19995 126 18 40 chr11 24555867 24557768 -97286088 - L1_Mus3 LINE L1 0 6638 4738 7 772 321 0 20 39 chr11 24557768 24557819 -97286037 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 772 19995 166 29 88 chr11 24557819 24559261 -97284595 - L1_Mus3 LINE L1 -1146 4737 3513 7 772 8523 32 18 20 chr11 24559261 24560247 -97283609 + L1Md_F3 LINE L1 5587 6570 -14 7 772 19995 166 29 88 chr11 24560247 24560991 -97282865 - L1_Mus3 LINE L1 -2371 3512 2796 7 772 257 0 0 29 chr11 24560991 24561025 -97282831 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 772 19995 145 23 56 chr11 24561025 24563641 -97280215 - L1_Mus3 LINE L1 -3088 2795 217 7 772 861 10 0 0 chr11 24566086 24566184 -97277672 + (TTC)n Simple_repeat Simple_repeat 2 99 0 7 772 597 265 48 24 chr11 24568043 24568267 -97275589 - MLT1C LTR MaLR -5 500 228 7 772 657 193 54 48 chr11 24568322 24568334 -97275522 - B1_Mur3 SINE Alu 0 149 138 8 772 1216 55 7 33 chr11 24568334 24568484 -97275372 - B1_Mm SINE Alu 0 147 2 8 772 657 193 54 48 chr11 24568484 24568513 -97275343 - B1_Mur3 SINE Alu -12 137 103 8 772 3987 83 0 8 chr11 24568513 24569013 -97274843 - L1Md_F2 LINE L1 -2 6580 6085 8 772 721 91 0 48 chr11 24569013 24569117 -97274739 - B1_Mm SINE Alu -47 100 2 8 772 495 250 7 88 chr11 24569117 24569149 -97274707 - B4 SINE B4 -101 191 67 8 772 335 340 60 7 chr11 24569152 24569303 -97274553 - MLT1C LTR MaLR -346 159 1 7 772 282 326 17 23 chr11 24570199 24570433 -97273423 + GA-rich Low_complexity Low_complexity 1 232 0 8 772 231 328 4 0 chr11 24570438 24570531 -97273325 - L2c LINE L2 -304 3083 2988 8 772 232 239 109 43 chr11 24571336 24571428 -97272428 - AmnSINE1 SINE SINE -67 508 411 8 772 233 322 83 25 chr11 24571926 24572047 -97271809 + MIR3 SINE MIR 12 139 -69 8 772 220 254 29 43 chr11 24574134 24574204 -97269652 - MIRc SINE MIR -98 170 102 8 772 257 327 19 37 chr11 24574316 24574424 -97269432 + MIRb SINE MIR 46 151 -117 9 772 417 20 0 0 chr11 24575201 24575251 -97268605 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 772 444 51 0 0 chr11 24575634 24575693 -97268163 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 772 287 247 71 0 chr11 24577883 24577968 -97265888 - L1MC4 LINE L1 -145 7897 7807 9 772 277 357 44 57 chr11 24578658 24578955 -97264901 - L1MC4 LINE L1 -1037 7005 6713 9 772 186 43 0 0 chr11 24579470 24579493 -97264363 + (TTC)n Simple_repeat Simple_repeat 2 24 0 9 772 863 164 47 52 chr11 24579542 24579735 -97264121 + MER53 DNA hAT 1 192 -1 9 772 406 286 66 11 chr11 24580764 24580923 -97262933 + MIR SINE MIR 29 192 -76 9 772 459 0 0 0 chr11 24583184 24583235 -97260621 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 772 866 258 22 27 chr11 24584009 24584232 -97259624 + B4 SINE B4 8 229 -63 9 772 288 0 0 0 chr11 24584325 24584357 -97259499 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 772 261 0 0 0 chr11 24584453 24584482 -97259374 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 772 609 102 0 0 chr11 24584482 24584590 -97259266 + (GA)n Simple_repeat Simple_repeat 2 109 0 1 772 1055 127 6 0 chr11 24586684 24586857 -97256999 + (TTCC)n Simple_repeat Simple_repeat 4 177 0 1 772 219 139 0 0 chr11 24586857 24586893 -97256963 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 772 641 200 154 12 chr11 24586986 24587148 -97256708 + B3 SINE B2 4 188 -28 1 772 205 158 53 0 chr11 24593235 24593292 -97250564 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1 772 456 104 0 0 chr11 24593341 24593408 -97250448 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 1 772 195 347 39 46 chr11 24593572 24593702 -97250154 + L2c LINE L2 3254 3382 -5 1 772 184 156 0 0 chr11 24593933 24593965 -97249891 + L2a LINE L2 3381 3412 -14 1 772 348 127 0 0 chr11 24594973 24595028 -97248828 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 772 369 332 86 52 chr11 24597133 24597487 -97246369 + L3 LINE CR1 3967 4343 -165 1 772 705 98 0 0 chr11 24597497 24597609 -97246247 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 772 486 0 0 0 chr11 24598395 24598449 -97245407 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 772 421 319 29 29 chr11 24598944 24599083 -97244773 - RSINE1 SINE B4 -25 140 2 1 772 295 228 56 42 chr11 24604198 24604314 -97239542 - MIR SINE MIR -96 166 49 1 772 2891 116 25 9 chr11 24604558 24605000 -97238856 - Lx2 LINE L1 -628 6369 5921 1 772 2073 124 126 20 chr11 24604992 24605493 -97238363 + Lx2 LINE L1 6018 6645 -352 1 772 21 71 0 0 chr11 24605589 24605631 -97238225 + AT_rich Low_complexity Low_complexity 1 42 0 1 772 1539 55 16 6 chr11 24606589 24606772 -97237084 - B2_Mm2 SINE B2 -9 186 2 1 772 241 301 11 11 chr11 24607148 24607242 -97236614 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 1 772 396 0 0 0 chr11 24607645 24607689 -97236167 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 772 28 29 0 0 chr11 24609106 24609141 -97234715 + AT_rich Low_complexity Low_complexity 1 35 0 1 772 504 32 0 0 chr11 24609396 24609458 -97234398 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 772 195 139 0 0 chr11 24609501 24609537 -97234319 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 772 22 0 0 0 chr11 24610013 24610035 -97233821 + AT_rich Low_complexity Low_complexity 1 22 0 1 772 299 285 112 62 chr11 24613191 24613352 -97230504 + B4 SINE B4 1 169 -123 1 772 423 0 0 0 chr11 24613552 24613599 -97230257 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 772 202 286 32 0 chr11 24613966 24614029 -97229827 + L2a LINE L2 3118 3182 -244 1 772 207 359 59 17 chr11 24614091 24614210 -97229646 + L2a LINE L2 3284 3407 -19 1 772 207 219 0 0 chr11 24615069 24615110 -97228746 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 772 785 211 80 25 chr11 24617255 24617454 -97226402 - B3 SINE B2 -4 212 3 1 772 198 0 0 0 chr11 24617461 24617483 -97226373 + (TA)n Simple_repeat Simple_repeat 1 22 0 1 772 228 67 0 0 chr11 24617483 24617512 -97226344 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 772 280 167 16 62 chr11 24617598 24617662 -97226194 - PB1D10 SINE Alu -29 88 28 1 772 27 0 0 0 chr11 24617980 24618007 -97225849 + AT_rich Low_complexity Low_complexity 1 27 0 1 772 197 98 0 24 chr11 24618016 24618058 -97225798 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 772 320 287 169 96 chr11 24619369 24619718 -97224138 + MLT1E LTR MaLR 34 408 0 1 772 333 359 40 14 chr11 24621574 24621766 -97222090 + MLT1E LTR MaLR 426 653 0 1 772 263 227 16 0 chr11 24622662 24622793 -97221063 + CT-rich Low_complexity Low_complexity 1 133 0 1 772 226 355 9 9 chr11 24624281 24624389 -97219467 - L2b LINE L2 -215 3160 3053 1 772 206 262 0 15 chr11 24625482 24625548 -97218308 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 772 186 43 0 0 chr11 24625548 24625571 -97218285 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 772 1444 270 75 62 chr11 24626594 24627298 -97216558 + L1MB1 LINE L1 5455 6167 -1 1 772 351 186 18 36 chr11 24629197 24629364 -97214492 + (TA)n Simple_repeat Simple_repeat 1 164 0 1 772 216 0 0 0 chr11 24631192 24631216 -97212640 + (AATAG)n Simple_repeat Simple_repeat 5 28 0 1 772 261 273 0 15 chr11 24631784 24631851 -97212005 + GA-rich Low_complexity Low_complexity 3 68 0 1 772 675 159 30 32 chr11 24632491 24632638 -97211218 + B1_Mur1 SINE Alu 5 148 -1 1 772 198 0 0 0 chr11 24632639 24632661 -97211195 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 1 772 242 270 1 13 chr11 24632935 24633013 -97210843 + MTEb LTR MaLR 301 379 0 1 772 423 271 112 83 chr11 24634300 24634469 -97209387 + B3 SINE B2 34 207 -9 1 772 284 227 40 13 chr11 24634489 24634565 -97209291 - PB1D10 SINE Alu -10 107 30 1 772 406 217 244 6 chr11 24635174 24635350 -97208506 + ID_B1 SINE B4 3 220 -4 1 772 423 0 0 0 chr11 24637261 24637308 -97206548 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 772 225 0 0 0 chr11 24637308 24637332 -97206524 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 772 743 318 16 0 chr11 24637333 24637525 -97206331 - B3 SINE B2 -21 195 1 1 772 1424 192 102 32 chr11 24637857 24638201 -97205655 - ORR1D1 LTR MaLR -4 370 3 1 772 226 278 0 0 chr11 24640131 24640185 -97203671 + CT-rich Low_complexity Low_complexity 6 59 0 1 772 180 0 0 0 chr11 24640424 24640444 -97203412 + (T)n Simple_repeat Simple_repeat 1 20 0 1 772 298 276 11 0 chr11 24641377 24641464 -97202392 + B1F SINE Alu 44 131 -18 1 773 366 61 0 0 chr11 24644647 24644696 -97199160 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 773 333 118 0 0 chr11 24645766 24645817 -97198039 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 773 221 247 10 0 chr11 24647899 24647996 -97195860 + CT-rich Low_complexity Low_complexity 2 99 0 1 773 261 57 0 0 chr11 24648696 24648731 -97195125 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 773 376 289 33 133 chr11 24648880 24649060 -97194796 - RSINE1 SINE B4 -2 163 2 1 773 295 289 135 16 chr11 24649444 24649648 -97194208 - MamGypLTR1b LTR Gypsy -491 291 57 1 773 221 259 35 12 chr11 24649798 24649884 -97193972 + MIR SINE MIR 139 226 -36 1 773 299 318 36 0 chr11 24650414 24650524 -97193332 - LFSINE_Vert SINE SINE -2 457 344 1 773 454 277 91 17 chr11 24650891 24651067 -97192789 + MER82 DNA MER2_type 1 189 -464 1 773 261 0 0 0 chr11 24651297 24651326 -97192530 + (T)n Simple_repeat Simple_repeat 1 29 0 1 773 263 214 14 0 chr11 24654478 24654548 -97189308 + (CATA)n Simple_repeat Simple_repeat 1 71 0 1 773 1574 186 27 15 chr11 24655502 24655834 -97188022 - ORR1B1 LTR MaLR -18 376 41 1 773 207 0 0 0 chr11 24656320 24656343 -97187513 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 773 202 29 27 81 chr11 24657143 24657180 -97186676 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 1 773 432 0 0 0 chr11 24657669 24657717 -97186139 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 773 390 42 0 0 chr11 24657717 24657764 -97186092 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 773 364 256 125 43 chr11 24657967 24658151 -97185705 - MER20 DNA MER1_type -1 218 20 1 773 418 278 0 10 chr11 24659057 24659155 -97184701 + MER81 DNA AcHobo 17 113 -1 1 773 282 349 55 30 chr11 24659301 24659502 -97184354 + MIRb SINE MIR 63 268 0 1 773 435 300 18 99 chr11 24662025 24662247 -97181609 - B3 SINE B2 0 216 13 1 773 1067 96 14 0 chr11 24662509 24662655 -97181201 - B1_Mus1 SINE Alu 0 148 1 1 773 227 313 15 0 chr11 24664580 24664647 -97179209 + CT-rich Low_complexity Low_complexity 2 69 0 1 773 261 0 0 0 chr11 24665341 24665370 -97178486 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 773 513 271 12 6 chr11 24665529 24665689 -97178167 - HAL1-2a_MD LINE L1 -519 2505 2345 1 773 3201 19 16 11 chr11 24665720 24666100 -97177756 - L1Md_F3 LINE L1 0 6584 6203 1 773 234 271 50 40 chr11 24666353 24666453 -97177403 + PB1D10 SINE Alu 4 104 -13 1 773 358 336 35 7 chr11 24666889 24667033 -97176823 - Lx8 LINE L1 -180 7293 7146 1 773 414 0 0 0 chr11 24667075 24667121 -97176735 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1 773 3197 214 43 5 chr11 24667133 24667754 -97176102 - Lx5 LINE L1 -9 7041 6397 1 773 3131 70 26 3 chr11 24668585 24668972 -97174884 - MTA_Mm LTR MaLR 0 396 1 1 773 537 320 83 39 chr11 24670631 24670836 -97173020 + MER20 DNA MER1_type 6 219 0 1 773 542 296 46 43 chr11 24672321 24672626 -97171230 + MER33 DNA MER1_type 2 281 -43 1 773 21 0 0 0 chr11 24672871 24672892 -97170964 + AT_rich Low_complexity Low_complexity 1 21 0 1 773 21 0 0 0 chr11 24673666 24673687 -97170169 + AT_rich Low_complexity Low_complexity 1 21 0 1 773 23 0 0 0 chr11 24673811 24673834 -97170022 + AT_rich Low_complexity Low_complexity 1 23 0 1 773 747 199 49 7 chr11 24673843 24673985 -97169871 + B1_Mur1 SINE Alu 1 148 -1 1 773 234 0 0 0 chr11 24674880 24674906 -97168950 + (T)n Simple_repeat Simple_repeat 1 26 0 1 773 291 265 12 0 chr11 24676561 24676644 -97167212 + (ATGGTG)n Simple_repeat Simple_repeat 3 86 0 1 773 278 360 62 34 chr11 24677825 24678003 -97165853 - MIRb SINE MIR -23 245 63 1 773 318 67 0 0 chr11 24678198 24678243 -97165613 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 773 209 108 27 0 chr11 24679027 24679064 -97164792 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 1 773 195 158 24 73 chr11 24679284 24679325 -97164531 - L2a LINE L2 -85 3341 3303 1 773 184 275 146 24 chr11 24679452 24679534 -97164322 - L3 LINE CR1 -3520 969 878 2 773 345 47 0 0 chr11 24680054 24680097 -97163759 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 773 4663 150 55 53 chr11 24680106 24681059 -97162797 + RMER17B LTR ERVK 2 955 -3 2 773 489 34 0 0 chr11 24681060 24681119 -97162737 + (CATA)n Simple_repeat Simple_repeat 1 59 0 2 773 441 0 0 0 chr11 24684834 24684883 -97158973 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 773 228 222 45 45 chr11 24685031 24685097 -97158759 - B4A SINE B4 -225 67 2 2 773 421 336 108 26 chr11 24685208 24685550 -97158306 + Tigger13a DNA MER2_type 150 519 -252 2 773 894 161 78 5 chr11 24686375 24686568 -97157288 + Lx3C LINE L1 6768 6974 -2 2 773 21 0 0 0 chr11 24686572 24686593 -97157263 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 2937 119 16 95 chr11 24686977 24687461 -97156395 - RLTR41 LTR ERV1 0 446 1 2 773 350 294 82 94 chr11 24688190 24688531 -97155325 + MamRep605 Unknown Unknown 492 828 -48 2 773 669 25 0 0 chr11 24689761 24689840 -97154016 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 773 324 0 0 0 chr11 24690336 24690372 -97153484 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2 773 201 275 20 45 chr11 24691254 24691349 -97152507 - L2a LINE L2 -2 3424 3298 2 773 366 173 0 0 chr11 24691497 24691572 -97152284 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 773 735 12 0 0 chr11 24691593 24691677 -97152179 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 773 396 0 0 0 chr11 24694716 24694760 -97149096 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 773 354 316 21 0 chr11 24694762 24694857 -97148999 - RSINE1 SINE B4 -54 111 15 2 773 507 17 0 0 chr11 24695899 24695959 -97147897 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 773 207 246 0 0 chr11 24696217 24696274 -97147582 + CT-rich Low_complexity Low_complexity 2 58 0 2 773 504 0 0 0 chr11 24696275 24696331 -97147525 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 773 320 113 0 31 chr11 24698509 24698573 -97145283 + (GGA)n Simple_repeat Simple_repeat 3 64 0 2 773 440 351 95 19 chr11 24699100 24699364 -97144492 - MER58B DNA MER1_type -56 285 2 2 773 273 29 0 0 chr11 24700481 24700515 -97143341 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 2 773 1218 99 94 0 chr11 24700584 24700775 -97143081 - L1_Mus3 LINE L1 -2 6636 6428 2 773 1308 71 0 0 chr11 24700775 24700943 -97142913 + L1_Mus3 LINE L1 6247 6414 -222 2 773 374 85 0 17 chr11 24701887 24701947 -97141909 + (TTTA)n Simple_repeat Simple_repeat 4 62 0 2 773 274 287 35 0 chr11 24702065 24702152 -97141704 + GA-rich Low_complexity Low_complexity 1 90 0 2 773 501 17 0 0 chr11 24703068 24703126 -97140730 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 773 6329 55 1 3 chr11 24703300 24704076 -97139780 + L1Md_F2 LINE L1 5787 6561 -21 2 773 39889 52 12 4 chr11 24705476 24711906 -97131950 - L1Md_T LINE L1 0 6582 101 2 773 506 119 12 0 chr11 24712353 24712437 -97131419 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 773 448 335 82 24 chr11 24713179 24713387 -97130469 + MLT1K LTR MaLR 166 385 -210 2 773 194 401 60 11 chr11 24714203 24714387 -97129469 + MIRb SINE MIR 42 234 -34 2 773 913 310 141 6 chr11 24714427 24714911 -97128945 - MER44B DNA MER2_type -1 549 1 2 773 384 328 174 6 chr11 24714914 24715230 -97128626 + L1MC4 LINE L1 7237 7605 -437 2 773 435 38 0 0 chr11 24715326 24715379 -97128477 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 773 315 268 83 19 chr11 24715634 24715790 -97128066 + L1MC4 LINE L1 7717 7882 0 2 773 19219 129 58 9 chr11 24716192 24721731 -97122125 + L1_Mus3 LINE L1 432 6632 -6 2 773 546 180 12 36 chr11 24723942 24724109 -97119747 + GA-rich Low_complexity Low_complexity 5 167 0 2 773 331 146 0 0 chr11 24724122 24724177 -97119679 - HAL1-3A_ME LINE L1 -828 2030 1976 2 773 624 27 0 0 chr11 24725358 24725432 -97118424 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 773 284 102 20 0 chr11 24725434 24725483 -97118373 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 2 773 267 364 90 6 chr11 24725514 24725680 -97118176 + MIRb SINE MIR 32 211 -57 2 773 457 306 57 93 chr11 24726368 24726687 -97117169 - L1ME2 LINE L1 -232 6127 5799 2 773 258 306 91 25 chr11 24726820 24726996 -97116860 - L1ME2 LINE L1 -544 5635 5440 2 773 342 0 0 0 chr11 24726996 24727034 -97116822 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 2 773 258 306 91 25 chr11 24727034 24727132 -97116724 - L1ME2 LINE L1 -740 5439 5344 2 773 762 130 0 0 chr11 24727202 24727333 -97116523 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 773 302 382 142 16 chr11 24727554 24727865 -97115991 + L2a LINE L2 3077 3426 0 2 773 272 130 37 0 chr11 24731455 24731509 -97112347 + (CAAT)n Simple_repeat Simple_repeat 4 59 0 2 773 23 54 0 0 chr11 24731551 24731588 -97112268 + AT_rich Low_complexity Low_complexity 1 37 0 2 773 995 204 58 0 chr11 24732636 24732827 -97111029 + B3 SINE B2 1 202 -14 2 773 295 23 45 0 chr11 24733142 24733186 -97110670 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 773 684 347 40 11 chr11 24733192 24733466 -97110390 - B4A SINE B4 -8 284 3 2 773 782 190 312 82 chr11 24734226 24734530 -97109326 - ORR1D1 LTR MaLR 0 374 1 2 773 232 173 26 39 chr11 24734956 24735034 -97108822 - Lx9 LINE L1 0 7644 7568 2 773 342 0 0 0 chr11 24735038 24735076 -97108780 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 773 195 42 0 0 chr11 24735077 24735101 -97108755 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 773 189 241 0 0 chr11 24735102 24735156 -97108700 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 773 611 213 0 0 chr11 24735160 24735287 -97108569 - Lx9 LINE L1 -174 7470 7344 2 773 934 282 39 42 chr11 24735302 24735658 -97108198 + Lx9 LINE L1 6980 7334 -310 2 773 507 147 0 0 chr11 24736639 24736741 -97107115 + (TC)n Simple_repeat Simple_repeat 2 103 0 2 773 391 253 0 0 chr11 24736789 24736884 -97106972 + MTD-int LTR MaLR 1147 1241 -17 2 773 1564 197 136 17 chr11 24736895 24737256 -97106600 + MTD LTR MaLR 3 406 -13 2 773 375 105 0 0 chr11 24737372 24737429 -97106427 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 773 21 0 0 0 chr11 24737721 24737742 -97106114 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 324 0 0 0 chr11 24738189 24738225 -97105631 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 773 308 305 102 0 chr11 24739029 24739147 -97104709 - MLT1A1 LTR MaLR -11 397 268 2 773 683 95 9 0 chr11 24740244 24740349 -97103507 + (GA)n Simple_repeat Simple_repeat 1 106 0 2 773 213 135 0 26 chr11 24740363 24740401 -97103455 + CT-rich Low_complexity Low_complexity 4 40 0 2 773 22 56 0 0 chr11 24740937 24740973 -97102883 + AT_rich Low_complexity Low_complexity 1 36 0 2 773 526 82 24 0 chr11 24741060 24741145 -97102711 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 773 257 75 25 0 chr11 24743919 24743959 -97099897 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 773 183 42 0 0 chr11 24744388 24744412 -97099444 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2 773 294 50 0 0 chr11 24744423 24744463 -97099393 + (T)n Simple_repeat Simple_repeat 1 40 0 2 773 318 241 23 0 chr11 24745177 24745264 -97098592 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 773 411 327 0 18 chr11 24745265 24745374 -97098482 - RSINE1 SINE B4 0 165 59 2 773 205 262 33 0 chr11 24745445 24745506 -97098350 - MIRc SINE MIR -153 115 53 2 773 3275 64 25 11 chr11 24746144 24746584 -97097272 + L1Md_F2 LINE L1 6124 6569 -13 2 773 716 285 0 55 chr11 24746693 24746912 -97096944 + B3 SINE B2 5 211 -5 2 773 1380 75 10 26 chr11 24747303 24747495 -97096361 + B2_Mm2 SINE B2 2 190 -5 2 773 555 322 42 19 chr11 24747514 24747713 -97096143 - B3A SINE B2 -12 204 1 2 773 463 379 98 21 chr11 24749992 24750318 -97093538 - MLT1I LTR MaLR -22 389 39 2 773 1043 316 46 52 chr11 24750349 24750849 -97093007 - MLT1D LTR MaLR -4 501 5 2 773 540 276 64 65 chr11 24751080 24751294 -97092562 - ORR1D2 LTR MaLR -136 234 1 2 773 1460 72 14 9 chr11 24753111 24753323 -97090533 - Lx3_Mus LINE L1 -303 6706 6494 2 773 2104 101 7 7 chr11 24753323 24753622 -97090234 + Lx3_Mus LINE L1 6703 7001 -8 2 773 1086 107 0 0 chr11 24753628 24753899 -97089957 + (GAA)n Simple_repeat Simple_repeat 1 271 0 2 773 438 381 17 6 chr11 24754146 24754320 -97089536 + B3A SINE B2 1 176 -22 2 773 780 264 46 31 chr11 24754348 24754543 -97089313 + B3A SINE B2 1 198 0 2 773 26 64 0 0 chr11 24756066 24756113 -97087743 + AT_rich Low_complexity Low_complexity 1 47 0 2 773 247 132 28 56 chr11 24757771 24757843 -97086013 + A-rich Low_complexity Low_complexity 3 72 0 2 773 4566 54 0 0 chr11 24759070 24759662 -97084194 + L1Md_F2 LINE L1 4995 5586 -297 2 773 8032 50 2 0 chr11 24759662 24760643 -97083213 + L1Md_F2 LINE L1 5587 6569 -13 2 773 250 303 54 29 chr11 24767184 24767425 -97076431 - L1MB4 LINE L1 0 6781 6535 2 773 22364 154 18 22 chr11 24767426 24771320 -97072536 - Lx LINE L1 0 6654 2798 2 773 180 0 0 0 chr11 24771320 24771340 -97072516 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 96 22364 144 25 26 chr11 24771340 24773543 -97070313 - Lx LINE L1 -3086 2797 582 2 774 570 326 49 44 chr11 24773560 24774071 -97069785 - L1MB4 LINE L1 -261 6523 6015 2 774 359 318 137 17 chr11 24774274 24774747 -97069109 - L1MB4 LINE L1 -1042 5705 5176 2 774 2463 58 0 22 chr11 24774915 24775233 -97068623 - L1_Mus1 LINE L1 -2 6565 6255 2 774 2031 88 14 0 chr11 24775235 24775529 -97068327 + L1_Mus1 LINE L1 5966 6263 -304 2 774 22 0 0 0 chr11 24775637 24775659 -97068197 + AT_rich Low_complexity Low_complexity 1 22 0 2 774 34024 37 0 3 chr11 24775659 24782253 -97061603 - L1Md_T LINE L1 0 6585 1 2 774 546 261 75 15 chr11 24782317 24782582 -97061274 - L1MB4 LINE L1 -3173 3574 3294 2 774 757 291 75 20 chr11 24782708 24783401 -97060455 - L1MB4 LINE L1 -3696 3051 2320 2 774 417 286 0 3 chr11 24783604 24783721 -97060135 - B1F SINE Alu 0 120 6 2 774 25 31 0 0 chr11 24783826 24783858 -97059998 + AT_rich Low_complexity Low_complexity 1 32 0 2 774 32787 73 4 5 chr11 24783858 24788480 -97055376 - L1Md_F2 LINE L1 -1 6581 1976 2 774 234 0 0 0 chr11 24788480 24788506 -97055350 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 774 32787 79 12 1 chr11 24788506 24790096 -97053760 - L1Md_F2 LINE L1 -3908 1975 352 2 774 21 36 0 0 chr11 24790493 24790521 -97053335 + AT_rich Low_complexity Low_complexity 1 28 0 2 774 298 339 66 0 chr11 24790767 24790950 -97052906 - L1MB4 LINE L1 -4578 2171 1977 2 774 189 107 0 0 chr11 24790950 24790978 -97052878 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2 774 273 235 0 0 chr11 24790995 24791080 -97052776 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 774 201 162 0 0 chr11 24791159 24791196 -97052660 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3 774 299 177 32 0 chr11 24791206 24791268 -97052588 - L1_Mur2 LINE L1 -1138 4739 4676 3 774 1861 151 5 119 chr11 24791263 24791707 -97052149 + L1_Mur2 LINE L1 4294 4686 -1191 3 774 419 299 82 37 chr11 24791709 24791855 -97052001 - L1MB4 LINE L1 -4859 1890 1734 2 774 450 36 0 0 chr11 24791855 24791911 -97051945 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 774 419 299 82 37 chr11 24791911 24792201 -97051655 - L1MB4 LINE L1 -5016 1733 1434 2 774 258 288 70 19 chr11 24792521 24792677 -97051179 - L1MB4 LINE L1 -6430 177 14 2 774 213 183 0 0 chr11 24792798 24792858 -97050998 + GA-rich Low_complexity Low_complexity 2 61 0 3 774 864 70 7 14 chr11 24792876 24793020 -97050836 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 3 774 6337 148 9 5 chr11 24796361 24797960 -97045896 + Lx LINE L1 5042 6646 -8 3 774 23 86 0 0 chr11 24798065 24798123 -97045733 + AT_rich Low_complexity Low_complexity 1 58 0 3 774 293 304 71 89 chr11 24798768 24798880 -97044976 - PB1D10 SINE Alu -7 110 1 3 774 221 113 68 41 chr11 24798946 24799093 -97044763 + (TA)n Simple_repeat Simple_repeat 1 151 0 3 774 271 78 37 56 chr11 24799140 24799194 -97044662 - L1_Mur2 LINE L1 -550 5327 5275 3 774 3539 103 184 1 chr11 24799194 24799931 -97043925 + L1_Mus3 LINE L1 5762 6633 -5 3 774 459 202 0 0 chr11 24801540 24801644 -97042212 + CT-rich Low_complexity Low_complexity 1 104 0 3 774 252 0 0 0 chr11 24801830 24801858 -97041998 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 774 291 93 0 0 chr11 24803685 24803728 -97040128 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 774 261 319 116 0 chr11 24804497 24804566 -97039290 - ID4_ SINE ID -2 81 5 3 774 209 202 69 46 chr11 24804979 24805109 -97038747 + (CATAT)n Simple_repeat Simple_repeat 3 135 0 3 774 185 139 23 0 chr11 24805113 24805156 -97038700 + (TATAA)n Simple_repeat Simple_repeat 1 44 0 3 774 26 30 0 0 chr11 24805200 24805233 -97038623 + AT_rich Low_complexity Low_complexity 1 33 0 3 774 195 100 0 0 chr11 24805279 24805309 -97038547 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 774 226 345 73 0 chr11 24805403 24805513 -97038343 + L2c LINE L2 3243 3360 -27 3 774 405 0 0 0 chr11 24806749 24806794 -97037062 + (TATG)n Simple_repeat Simple_repeat 2 46 0 3 774 302 341 22 42 chr11 24807000 24807244 -97036612 + MIRb SINE MIR 22 260 -8 3 774 1081 132 5 5 chr11 24808822 24809020 -97034836 - L1_Mur2 LINE L1 -528 5349 5152 3 774 3729 74 19 15 chr11 24809020 24809543 -97034313 + L1_Mus3 LINE L1 6113 6637 -1 3 774 739 198 108 15 chr11 24809583 24809778 -97034078 + B3 SINE B2 1 213 -3 3 774 861 113 0 20 chr11 24809937 24810090 -97033766 + (CA)n Simple_repeat Simple_repeat 2 151 0 3 774 328 240 95 42 chr11 24810331 24810481 -97033375 + MTE2b LTR MaLR 1 150 -229 3 774 437 50 17 0 chr11 24810573 24810633 -97033223 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 774 405 198 0 0 chr11 24811859 24811945 -97031911 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 774 186 143 0 0 chr11 24811966 24812001 -97031855 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3 774 865 326 7 50 chr11 24815866 24816132 -97027724 + B4A SINE B4 2 257 -35 3 774 1333 92 5 5 chr11 24816132 24816317 -97027539 + B2_Mm1t SINE B2 1 185 -8 3 774 865 326 7 50 chr11 24816317 24816350 -97027506 + B4A SINE B4 258 288 -4 3 774 2008 112 34 28 chr11 24816509 24816866 -97026990 + RLTR15 LTR ERVK 1 359 0 3 774 1129 241 135 151 chr11 24817106 24817727 -97026129 + RMER19C LTR ERVK 1 611 0 3 774 213 330 74 14 chr11 24817778 24817858 -97025998 - MIR SINE MIR -176 92 8 3 774 324 242 196 26 chr11 24818801 24818954 -97024902 + MER33 DNA MER1_type 142 320 -4 3 774 21 36 0 0 chr11 24819653 24819681 -97024175 + AT_rich Low_complexity Low_complexity 1 28 0 3 774 559 179 14 0 chr11 24821295 24821435 -97022421 + CT-rich Low_complexity Low_complexity 1 142 0 3 774 3552 102 6 4 chr11 24822219 24822722 -97021134 - L1_Mus3 LINE L1 -7 6631 6128 3 774 209 213 32 16 chr11 24822853 24822915 -97020941 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 774 1178 58 6 17 chr11 24822923 24823098 -97020758 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 3 774 3576 44 0 0 chr11 24823766 24824195 -97019661 - L1Md_F2 LINE L1 -14 6568 6140 3 774 198 0 0 0 chr11 24824544 24824566 -97019290 + (CTG)n Simple_repeat Simple_repeat 2 23 0 3 774 194 221 69 56 chr11 24825384 24825456 -97018400 + MIRc SINE MIR 185 257 -11 3 774 495 48 0 0 chr11 24828101 24828163 -97015693 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 774 807 224 92 92 chr11 24829504 24829765 -97014091 + MLT1B LTR MaLR 4 264 -126 3 774 399 350 119 20 chr11 24830093 24830388 -97013468 - L1M5 LINE L1 -458 5782 5459 3 774 219 385 50 25 chr11 24830429 24830589 -97013267 - MIRc SINE MIR -62 206 43 3 774 690 13 0 0 chr11 24831688 24831767 -97012089 + (TCC)n Simple_repeat Simple_repeat 3 81 0 3 774 1060 89 0 0 chr11 24831767 24831902 -97011954 - B1_Mus1 SINE Alu -12 136 2 3 774 406 366 159 22 chr11 24832669 24833390 -97010466 - L2 LINE L2 -687 2732 1913 3 774 234 292 15 0 chr11 24833631 24833696 -97010160 + L2b LINE L2 3310 3375 0 3 774 22 0 0 0 chr11 24833794 24833816 -97010040 + AT_rich Low_complexity Low_complexity 1 22 0 3 774 414 276 96 15 chr11 24834359 24834558 -97009298 - ID_B1 SINE B4 -8 216 2 3 774 234 61 0 29 chr11 24834617 24834651 -97009205 + RMER17C LTR ERVK 1 33 -377 3 774 881 242 126 40 chr11 24835960 24836309 -97007547 + MTE2b LTR MaLR 1 379 0 3 774 294 246 98 33 chr11 24836751 24836873 -97006983 + RLTR15 LTR ERVK 1 130 -229 3 774 222 176 0 0 chr11 24837547 24837598 -97006258 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 774 22 0 0 0 chr11 24838226 24838248 -97005608 + AT_rich Low_complexity Low_complexity 1 22 0 3 774 420 20 0 0 chr11 24838654 24838703 -97005153 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 774 234 91 0 0 chr11 24839158 24839191 -97004665 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 774 877 294 52 59 chr11 24839245 24839534 -97004322 - B4A SINE B4 -3 289 3 3 774 291 157 0 0 chr11 24839565 24839616 -97004240 + (TCG)n Simple_repeat Simple_repeat 2 52 0 3 774 297 0 0 0 chr11 24839797 24839830 -97004026 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 774 3379 33 5 0 chr11 24839948 24840342 -97003514 - MTA_Mm LTR MaLR 0 396 1 3 774 388 316 106 47 chr11 24840562 24840921 -97002935 - Lx9 LINE L1 -43 7601 7222 3 774 1755 294 69 28 chr11 24840923 24841952 -97001904 - Lx9 LINE L1 -630 7014 5793 3 774 288 111 0 0 chr11 24842361 24842406 -97001450 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 774 27 49 0 0 chr11 24842780 24842821 -97001035 + AT_rich Low_complexity Low_complexity 1 41 0 3 774 546 309 12 41 chr11 24842891 24843063 -97000793 - B3 SINE B2 0 216 50 3 774 228 220 17 0 chr11 24843259 24843318 -97000538 - L1MEf LINE L1 -4724 1476 1417 3 774 314 420 34 65 chr11 24843371 24843664 -97000192 + MLT1G LTR MaLR 28 311 -280 3 774 182 261 22 0 chr11 24843995 24844041 -96999815 + L2a LINE L2 3380 3426 0 3 774 205 295 113 30 chr11 24846244 24846377 -96997479 - MIRb SINE MIR -1 267 124 3 774 2174 216 30 55 chr11 24846934 24847048 -96996808 + Lx5 LINE L1 6537 6645 -405 3 774 1394 55 44 0 chr11 24847048 24847229 -96996627 + B2_Mm1a SINE B2 2 190 -3 3 774 2174 216 30 55 chr11 24847229 24847638 -96996218 + Lx5 LINE L1 6646 7047 -3 3 774 375 23 0 0 chr11 24848083 24848127 -96995729 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 774 3745 139 97 14 chr11 24848593 24849319 -96994537 + RMER16-int LTR ERVK 2132 3356 -2452 3 774 7648 100 25 26 chr11 24849302 24849791 -96994065 + RMER16-int LTR ERVK 2930 3411 -1995 3 774 374 0 22 0 chr11 24849791 24849837 -96994019 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 774 7648 100 25 26 chr11 24849837 24850602 -96993254 + RMER16-int LTR ERVK 3412 4182 -1224 3 774 252 272 9 37 chr11 24850604 24850711 -96993145 + ETnERV2-int LTR ERVK 6097 6200 -1206 3 774 261 0 0 0 chr11 24851085 24851114 -96992742 + (A)n Simple_repeat Simple_repeat 1 29 0 3 774 459 251 169 77 chr11 24851273 24851610 -96992246 + RLTR9A LTR ERVK 1 368 0 3 774 1555 188 29 72 chr11 24851753 24852212 -96991644 + RMER17C LTR ERVK 16 439 -519 3 774 593 218 108 13 chr11 24852220 24852378 -96991478 + RMER17C-int LTR ERVK 7 179 -3059 3 774 676 207 215 28 chr11 24853628 24854027 -96989829 + RMER17C-int LTR ERVK 1513 1985 -1253 3 774 923 153 23 0 chr11 24854028 24854204 -96989652 + RMER17C-int LTR ERVK 2163 2342 -896 3 774 752 105 105 111 chr11 24854202 24854374 -96989482 + RMER17C-int LTR ERVK 2533 2703 -535 3 774 993 161 149 24 chr11 24854397 24854780 -96989076 + RMER17C-int LTR ERVK 2806 3236 -2 3 774 1454 201 24 41 chr11 24854785 24855238 -96988618 + RMER17C LTR ERVK 16 441 -517 3 774 200 132 26 0 chr11 24855243 24855281 -96988575 + A-rich Low_complexity Low_complexity 3 41 0 3 774 41 0 0 0 chr11 24855834 24855875 -96987981 + AT_rich Low_complexity Low_complexity 1 41 0 3 774 430 46 15 15 chr11 24855985 24856051 -96987805 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 774 386 240 28 1 chr11 24856051 24856141 -96987715 - PB1D10 SINE Alu -13 107 14 3 774 970 106 7 0 chr11 24856713 24856864 -96986992 + Lx2 LINE L1 5643 5794 -1203 3 774 8690 20 0 0 chr11 24856871 24857922 -96985934 + L1Md_T LINE L1 4536 5586 -297 3 774 8585 28 0 0 chr11 24857922 24858918 -96984938 + L1Md_T LINE L1 5587 6582 0 3 774 191 32 65 0 chr11 24858923 24858954 -96984902 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 774 1135 72 0 0 chr11 24858963 24859102 -96984754 + B1_Mus1 SINE Alu 1 139 -9 3 774 260 0 57 0 chr11 24859102 24859137 -96984719 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 774 1740 149 49 3 chr11 24859142 24859492 -96984364 + Lx2 LINE L1 5783 6148 -849 3 774 644 298 26 55 chr11 24859488 24859856 -96984000 + L1VL4 LINE L1 14 494 -5808 3 774 5554 116 28 8 chr11 24859896 24861936 -96981920 + L1_Mus4 LINE L1 2045 2976 -938 3 774 1339 140 9 0 chr11 24861924 24862152 -96981704 + Lx2 LINE L1 6766 6995 -2 3 774 26 0 0 0 chr11 24862598 24862624 -96981232 + AT_rich Low_complexity Low_complexity 1 26 0 3 774 486 325 38 11 chr11 24863130 24863391 -96980465 + L1M5 LINE L1 4519 4786 -1360 3 774 1073 234 48 45 chr11 24863391 24863682 -96980174 - MER58B DNA MER1_type 0 341 50 3 774 432 274 69 13 chr11 24864991 24865224 -96978632 + L1M5 LINE L1 4044 4289 -1857 3 774 345 314 97 29 chr11 24865401 24865709 -96978147 + L1M5 LINE L1 4341 4669 -1477 3 774 256 209 20 140 chr11 24866680 24866698 -96977158 + Lx9 LINE L1 6333 6350 -1294 3 774 504 0 0 0 chr11 24866698 24866754 -96977102 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 774 256 209 20 140 chr11 24866754 24866835 -96977021 + Lx9 LINE L1 6351 6420 -1224 3 774 29 28 0 0 chr11 24866911 24866947 -96976909 + AT_rich Low_complexity Low_complexity 1 36 0 4 774 967 308 6 6 chr11 24866953 24867270 -96976586 + Lx9 LINE L1 6437 6753 -891 3 774 1115 269 88 15 chr11 24867308 24867647 -96976209 + ORR1D2 LTR MaLR 6 369 -1 4 774 1146 326 29 54 chr11 24867649 24868337 -96975519 + Lx9 LINE L1 6771 7441 -203 3 774 1119 253 136 44 chr11 24868350 24868689 -96975167 - ORR1D2 LTR MaLR 0 370 1 4 774 561 55 0 0 chr11 24868691 24868764 -96975092 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 774 28 29 0 0 chr11 24868898 24868933 -96974923 + AT_rich Low_complexity Low_complexity 1 35 0 4 774 189 74 0 0 chr11 24871241 24871268 -96972588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 774 940 126 40 0 chr11 24871268 24871419 -96972437 - B2_Mm2 SINE B2 -37 158 2 4 774 229 365 17 25 chr11 24871530 24871648 -96972208 - MIR SINE MIR -135 127 11 4 774 728 306 22 13 chr11 24872774 24873006 -96970850 - L3b LINE CR1 -173 309 76 4 774 495 0 0 0 chr11 24873082 24873137 -96970719 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 774 351 0 0 0 chr11 24873219 24873258 -96970598 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 774 288 0 0 0 chr11 24873258 24873289 -96970567 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 774 402 39 0 0 chr11 24875996 24876048 -96967808 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 774 405 0 0 0 chr11 24877019 24877064 -96966792 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 774 423 0 0 0 chr11 24877065 24877112 -96966744 + (CCA)n Simple_repeat Simple_repeat 1 47 0 4 774 338 296 78 103 chr11 24878769 24879130 -96964726 + MLT1B LTR MaLR 47 390 0 4 774 630 162 0 0 chr11 24880850 24880951 -96962905 + CT-rich Low_complexity Low_complexity 49 149 0 4 774 381 95 0 0 chr11 24880951 24881014 -96962842 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 774 630 162 0 0 chr11 24881014 24881060 -96962796 + polypyrimidine Low_complexity Low_complexity 3 48 0 4 774 225 0 0 0 chr11 24882561 24882586 -96961270 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 774 414 0 0 0 chr11 24882700 24882746 -96961110 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 774 465 19 0 0 chr11 24883529 24883583 -96960273 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 774 204 105 17 50 chr11 24884046 24884106 -96959750 + T-rich Low_complexity Low_complexity 3 60 0 4 774 357 250 164 111 chr11 24884414 24884603 -96959253 + MER20 DNA MER1_type 5 203 -16 4 774 728 250 28 28 chr11 24886824 24887005 -96956851 + B4 SINE B4 110 290 -2 4 774 599 348 61 14 chr11 24888124 24888418 -96955438 + MLT1A0 LTR MaLR 4 311 -54 4 774 478 282 10 9 chr11 24888407 24888531 -96955325 - B1F1 SINE Alu 0 120 1 4 774 216 240 40 0 chr11 24889733 24889783 -96954073 + GA-rich Low_complexity Low_complexity 3 54 0 4 774 201 163 0 0 chr11 24889783 24889832 -96954024 + (CAGAGA)n Simple_repeat Simple_repeat 2 50 0 4 774 581 154 16 0 chr11 24889973 24890096 -96953760 + CT-rich Low_complexity Low_complexity 3 127 0 4 774 464 340 79 39 chr11 24890643 24890922 -96952934 - L3 LINE CR1 -10 4479 4190 4 774 390 121 0 0 chr11 24893128 24893194 -96950662 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 774 223 250 0 0 chr11 24893291 24893351 -96950505 - MIRc SINE MIR -14 254 195 4 774 23 54 0 0 chr11 24893707 24893744 -96950112 + AT_rich Low_complexity Low_complexity 1 37 0 4 774 287 49 0 24 chr11 24894967 24895009 -96948847 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 4 774 452 284 83 70 chr11 24895489 24896058 -96947798 + L1MEg LINE L1 1398 1973 -4269 4 774 1563 289 82 14 chr11 24896322 24897174 -96946682 + L1MEg LINE L1 2271 3180 -2966 4 774 432 37 0 0 chr11 24897403 24897457 -96946399 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 774 235 330 84 67 chr11 24897642 24898013 -96945843 + L1MEg LINE L1 3687 4063 -2083 4 774 602 294 102 43 chr11 24898346 24899212 -96944644 - L1MA5 LINE L1 -1163 5895 4982 4 774 369 313 162 12 chr11 24899369 24899696 -96944160 + L1MEg LINE L1 4427 4802 -1344 4 774 1182 56 0 0 chr11 24900367 24900510 -96943346 - B1_Mm SINE Alu -3 144 2 4 774 1322 137 56 0 chr11 24901070 24901303 -96942553 + RMER10B LTR ERVL 1 246 -152 4 774 1822 78 4 0 chr11 24901478 24901720 -96942136 - L1_Mus1 LINE L1 -243 6324 6082 4 774 3237 79 115 0 chr11 24901723 24902333 -96941523 + L1_Mus1 LINE L1 5427 6087 -480 4 774 26 0 0 0 chr11 24902643 24902669 -96941187 + AT_rich Low_complexity Low_complexity 1 26 0 4 775 243 0 0 0 chr11 24904240 24904267 -96939589 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 4 775 397 309 79 0 chr11 24904412 24904577 -96939279 - Tigger7 DNA MER2_type -44 2447 2270 4 775 364 320 148 0 chr11 24905290 24905412 -96938444 + RSINE1 SINE B4 1 140 -25 4 775 240 59 0 0 chr11 24905444 24905478 -96938378 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 775 233 57 0 28 chr11 24907143 24907179 -96936677 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 775 264 158 0 0 chr11 24907180 24907237 -96936619 + GA-rich Low_complexity Low_complexity 2 58 0 4 775 658 286 11 35 chr11 24907272 24907446 -96936410 - B3A SINE B2 -27 171 2 4 775 330 26 0 0 chr11 24907795 24907834 -96936022 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 775 308 88 18 0 chr11 24907847 24907904 -96935952 - Lx LINE L1 -2 6652 6595 4 775 2900 97 53 0 chr11 24907911 24908325 -96935531 + L1_Mm LINE L1 5338 5773 -110 4 775 746 215 46 91 chr11 24908493 24908734 -96935122 + MT2A LTR ERVL 4 233 -300 4 775 241 292 26 17 chr11 24908813 24908928 -96934928 - L1MEg LINE L1 -4727 1357 1242 4 775 3794 136 2 37 chr11 24910136 24910755 -96933101 + MT2B LTR ERVL 3 599 -2 4 775 612 283 62 54 chr11 24910769 24911139 -96932717 + L1MA4A LINE L1 4449 4821 -1319 4 775 674 226 142 40 chr11 24911290 24911589 -96932267 + RLTR23 LTR ERV1 8 411 -19 4 775 613 271 106 80 chr11 24911596 24911833 -96932023 + MTD LTR MaLR 163 405 -14 4 775 612 247 176 28 chr11 24911834 24912226 -96931630 + L1MA4A LINE L1 4819 5270 -873 4 775 593 251 64 6 chr11 24912302 24912474 -96931382 + L1MA4A LINE L1 5508 5689 -602 4 775 259 267 189 19 chr11 24912522 24912728 -96931128 + L1MA4A LINE L1 5784 6024 -279 4 775 405 0 0 0 chr11 24912998 24913043 -96930813 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 775 358 36 18 18 chr11 24913227 24913284 -96930572 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 4 775 243 23 68 0 chr11 24913944 24913988 -96929868 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 4 775 25 31 0 0 chr11 24914223 24914255 -96929601 + AT_rich Low_complexity Low_complexity 1 32 0 4 775 571 277 8 0 chr11 24914388 24914507 -96929349 - RSINE1 SINE B4 -43 122 3 4 775 251 71 24 0 chr11 24914744 24914786 -96929070 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 775 222 37 0 0 chr11 24915443 24915470 -96928386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 775 8150 48 1 2 chr11 24916745 24917932 -96925924 - L1Md_F2 LINE L1 -2 6580 5395 4 775 29 0 0 0 chr11 24918113 24918142 -96925714 + AT_rich Low_complexity Low_complexity 1 29 0 4 775 319 356 59 46 chr11 24920280 24920433 -96923423 + RSINE1 SINE B4 5 159 -6 4 775 1487 319 102 42 chr11 24920612 24922071 -96921785 + L1MB7 LINE L1 121 1667 -4875 4 775 417 284 127 31 chr11 24922416 24922783 -96921073 + L1MB7 LINE L1 2494 2905 -3739 4 775 661 293 53 11 chr11 24922810 24923093 -96920763 + Lx7 LINE L1 5602 5896 -1800 4 775 279 0 0 0 chr11 24923101 24923132 -96920724 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 775 1207 254 127 9 chr11 24923599 24923929 -96919927 + ORR1D1 LTR MaLR 6 374 0 4 775 314 282 74 26 chr11 24923934 24924163 -96919693 + L1MB7 LINE L1 3324 3563 -3081 4 775 571 302 106 3 chr11 24924263 24924575 -96919281 + L1MB7 LINE L1 5527 5870 -774 4 775 368 305 95 10 chr11 24924677 24925015 -96918841 + L1MB7 LINE L1 5936 6325 -357 4 775 216 158 0 0 chr11 24925550 24925588 -96918268 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 775 513 0 0 0 chr11 24925592 24925649 -96918207 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 775 409 298 47 80 chr11 24925886 24926160 -96917696 + L1MB7 LINE L1 6410 6674 -8 4 775 768 337 58 23 chr11 24926715 24927143 -96916713 + L1MEc LINE L1 36 478 -5922 4 775 297 0 0 0 chr11 24927175 24927208 -96916648 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 775 606 119 0 0 chr11 24927209 24927309 -96916547 + (T)n Simple_repeat Simple_repeat 1 100 0 4 775 1123 62 28 0 chr11 24927309 24927453 -96916403 - B1_Mus1 SINE Alu 0 148 1 4 775 606 119 0 0 chr11 24927453 24927470 -96916386 + (T)n Simple_repeat Simple_repeat 1 17 0 4 775 727 238 108 10 chr11 24927873 24928068 -96915788 + ORR1D1 LTR MaLR 40 253 -121 4 775 1735 203 82 0 chr11 24928070 24928434 -96915422 + ORR1D1-int LTR MaLR 952 1345 -25 4 775 723 235 255 0 chr11 24928440 24928738 -96915118 + ORR1D1 LTR MaLR 1 374 0 4 775 323 281 33 100 chr11 24929123 24929275 -96914581 + L1MEc LINE L1 2910 3051 -3268 4 775 385 202 16 88 chr11 24929275 24929400 -96914456 - PB1D7 SINE Alu 0 120 5 4 775 323 281 33 100 chr11 24929400 24929488 -96914368 + L1MEc LINE L1 3052 3134 -3185 4 775 917 293 52 28 chr11 24929527 24929990 -96913866 + L1MEc LINE L1 5506 5979 -358 4 775 952 75 105 0 chr11 24930464 24930597 -96913259 + B1_Mus2 SINE Alu 1 147 0 4 775 279 0 0 0 chr11 24931100 24931131 -96912725 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 775 760 256 56 6 chr11 24932840 24933001 -96910855 + B3 SINE B2 31 199 -17 4 775 404 225 20 0 chr11 24933187 24933338 -96910518 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 4 775 307 338 7 0 chr11 24933338 24933486 -96910370 - Lx9 LINE L1 -181 7463 7315 4 775 489 252 9 0 chr11 24933543 24933654 -96910202 - Lx9 LINE L1 -629 7015 6904 4 775 820 249 38 28 chr11 24933656 24933867 -96909989 - B3 SINE B2 -3 213 1 4 775 375 78 0 0 chr11 24933995 24934046 -96909810 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 775 432 0 0 0 chr11 24934046 24934093 -96909763 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 775 199 244 17 0 chr11 24934096 24934211 -96909645 + (CA)n Simple_repeat Simple_repeat 1 117 0 4 775 346 82 0 164 chr11 24934211 24934284 -96909572 + HAL1-3A_ME LINE L1 1976 2036 -822 4 775 784 328 95 9 chr11 24935321 24935659 -96908197 - MTE2a LTR MaLR -6 373 7 4 775 402 333 87 40 chr11 24936283 24936671 -96907185 - MLT1E1A LTR MaLR -72 555 101 4 775 1937 246 97 55 chr11 24937299 24938165 -96905691 - Lx9 LINE L1 -1658 5986 5049 4 775 216 0 0 0 chr11 24939595 24939619 -96904237 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 775 600 40 0 0 chr11 24939619 24939693 -96904163 + (GA)n Simple_repeat Simple_repeat 1 75 0 4 775 541 212 119 15 chr11 24939718 24939832 -96904024 + B3 SINE B2 69 195 -21 4 775 246 62 0 0 chr11 24939832 24939864 -96903992 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 775 541 212 119 15 chr11 24939864 24939883 -96903973 + B3 SINE B2 196 216 0 4 775 260 224 17 0 chr11 24940260 24940318 -96903538 - MIR SINE MIR -57 151 93 4 775 30 0 0 0 chr11 24941538 24941568 -96902288 + AT_rich Low_complexity Low_complexity 1 30 0 4 775 185 87 22 90 chr11 24944968 24945057 -96898799 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 4 775 355 62 62 0 chr11 24945863 24945928 -96897928 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 5 775 199 0 65 0 chr11 24946330 24946361 -96897495 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 775 278 328 112 0 chr11 24947538 24947654 -96896202 - MLT1J2 LTR MaLR -317 131 3 5 775 63 36 0 0 chr11 24948767 24948851 -96895005 + AT_rich Low_complexity Low_complexity 1 84 0 5 775 973 93 0 0 chr11 24948851 24948980 -96894876 + B1_Mm SINE Alu 14 142 -5 5 775 26 0 0 0 chr11 24948980 24949006 -96894850 + AT_rich Low_complexity Low_complexity 1 26 0 5 775 285 145 0 0 chr11 24949964 24950026 -96893830 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 775 184 268 55 27 chr11 24951367 24951440 -96892416 - L3 LINE CR1 -3178 1311 1237 5 775 224 378 50 43 chr11 24951805 24951946 -96891910 + MIRm SINE MIR 64 205 -71 5 775 1844 154 71 25 chr11 24952826 24953191 -96890665 - ORR1C2 LTR MaLR -2 382 1 5 775 3847 187 16 6 chr11 24953191 24953918 -96889938 - ORR1C2-int LTR MaLR 0 1509 678 5 775 1968 223 34 7 chr11 24953935 24954350 -96889506 - ORR1C2-int LTR MaLR -1083 426 1 5 775 1496 190 137 0 chr11 24954350 24954671 -96889185 - ORR1C2 LTR MaLR 0 384 20 5 775 357 125 0 0 chr11 24956618 24956674 -96887182 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 775 473 314 89 33 chr11 24958337 24958551 -96885305 + MER2 DNA MER2_type 120 345 0 5 775 226 327 34 36 chr11 24958622 24958744 -96885112 + B4A SINE B4 21 141 -151 5 775 269 350 0 0 chr11 24958855 24958955 -96884901 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 775 568 337 99 31 chr11 24959473 24959767 -96884089 + ORR1E LTR MaLR 3 316 -43 5 775 201 128 51 0 chr11 24959782 24959821 -96884035 + (CAAAC)n Simple_repeat Simple_repeat 2 42 0 5 775 190 247 26 0 chr11 24959821 24959898 -96883958 + CT-rich Low_complexity Low_complexity 1 79 0 5 775 633 27 0 0 chr11 24960982 24961057 -96882799 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 775 2030 54 0 0 chr11 24961634 24961892 -96881964 + RLTR10A LTR ERVK 1 258 -153 5 775 1346 131 5 0 chr11 24961884 24962083 -96881773 + RLTR27 LTR ERVK 110 309 0 5 775 40 0 0 0 chr11 24964306 24964346 -96879510 + AT_rich Low_complexity Low_complexity 1 40 0 5 775 212 213 0 21 chr11 24964430 24964478 -96879378 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 5 775 1232 41 7 0 chr11 24964607 24964753 -96879103 + B1_Mus1 SINE Alu 2 148 0 5 775 324 152 0 0 chr11 24964860 24964926 -96878930 + GA-rich Low_complexity Low_complexity 2 67 0 5 775 928 142 0 17 chr11 24965717 24965896 -96877960 + CT-rich Low_complexity Low_complexity 4 179 0 5 775 311 285 102 0 chr11 24966304 24966423 -96877433 + MLT1D LTR MaLR 48 180 -325 5 775 286 308 13 13 chr11 24966423 24966502 -96877354 + B4A SINE B4 1 79 -213 5 775 1200 111 0 0 chr11 24966518 24966698 -96877158 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 5 775 350 91 0 18 chr11 24966698 24966748 -96877108 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 775 237 399 132 10 chr11 24968452 24968657 -96875199 + MIRb SINE MIR 20 249 -19 5 775 238 322 8 56 chr11 24968660 24968785 -96875071 + RLTR43A LTR ERVK 133 251 -113 5 775 352 289 23 69 chr11 24969806 24969839 -96874017 + B1F SINE Alu 22 54 -95 5 775 3738 157 54 24 chr11 24969839 24970511 -96873345 + RLTR17 LTR ERVK 1 692 0 5 775 352 289 23 69 chr11 24970511 24970607 -96873249 + B1F SINE Alu 55 145 -4 5 775 459 0 0 0 chr11 24970786 24970837 -96873019 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 775 7009 155 5 14 chr11 24970926 24972133 -96871723 - Lx2 LINE L1 0 6997 5802 5 775 7679 163 15 1 chr11 24972133 24973554 -96870302 + Lx2 LINE L1 4334 5774 -103 5 775 318 26 0 0 chr11 24973670 24973709 -96870147 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 775 491 74 12 0 chr11 24973712 24973793 -96870063 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 775 28330 82 2 3 chr11 24974514 24975670 -96868186 - L1_Mus2 LINE L1 0 6566 5446 5 775 1010 128 0 13 chr11 24975670 24975820 -96868036 - B1_Mus1 SINE Alu 0 148 1 5 775 28330 114 10 15 chr11 24975820 24980128 -96863728 - L1_Mus2 LINE L1 -438 5445 1126 5 775 1731 159 7 4 chr11 24980128 24980405 -96863451 - RLTR27 LTR ERVK 0 309 32 5 775 5798 96 31 7 chr11 24980405 24981277 -96862579 - L1_Mus2 LINE L1 -5529 1109 217 5 775 1651 212 36 7 chr11 24981595 24982000 -96861856 - Lx5 LINE L1 -5 7053 6602 5 775 2657 184 43 5 chr11 24982040 24982596 -96861260 - Lx5 LINE L1 -613 6437 5861 5 775 1224 184 11 11 chr11 24982593 24982874 -96860982 + L1_Mur2 LINE L1 4985 5265 -612 5 775 597 12 37 0 chr11 24983798 24983880 -96859976 + (CCA)n Simple_repeat Simple_repeat 1 85 0 5 775 1635 194 37 58 chr11 24983972 24984175 -96859681 - ORR1D1 LTR MaLR 0 374 165 5 775 189 0 0 0 chr11 24984175 24984196 -96859660 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 775 318 26 0 0 chr11 24984200 24984239 -96859617 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 775 1635 194 37 58 chr11 24984239 24984412 -96859444 - ORR1D1 LTR MaLR -210 164 1 5 775 201 94 0 0 chr11 24984892 24984924 -96858932 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 5 775 2881 33 97 0 chr11 24985158 24985519 -96858337 - MTA_Mm LTR MaLR 0 396 1 5 775 1317 180 90 0 chr11 24986731 24986975 -96856881 + ORR1B2 LTR MaLR 1 266 -101 5 775 552 366 79 14 chr11 24989394 24989685 -96854171 - MER2 DNA MER2_type 0 345 36 5 775 220 279 33 0 chr11 24989732 24989793 -96854063 - MIR SINE MIR -118 144 82 5 775 336 83 0 0 chr11 24993062 24993110 -96850746 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 775 21 0 0 0 chr11 24993584 24993605 -96850251 + AT_rich Low_complexity Low_complexity 1 21 0 5 775 301 280 110 0 chr11 24994343 24994443 -96849413 + PB1D9 SINE Alu 1 111 -9 5 775 333 312 0 0 chr11 24994630 24994707 -96849149 - ID4_ SINE ID -4 79 3 5 775 576 77 0 0 chr11 24994752 24994830 -96849026 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 5 775 259 346 17 98 chr11 24994951 24995124 -96848732 - B4 SINE B4 -129 163 5 5 775 303 355 107 42 chr11 24995172 24995528 -96848328 - L2a LINE L2 0 3426 3048 5 775 381 340 9 19 chr11 24996777 24996993 -96846863 + L1M5 LINE L1 5506 5719 -445 5 775 908 279 73 67 chr11 24997358 24997700 -96846156 - ORR1E LTR MaLR -10 349 6 5 775 223 270 16 0 chr11 24997760 24997823 -96846033 + PB1D10 SINE Alu 31 94 -23 5 775 24 0 0 0 chr11 24997922 24997946 -96845910 + AT_rich Low_complexity Low_complexity 1 24 0 5 775 294 29 0 0 chr11 24998705 24998740 -96845116 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 5 775 1155 77 0 0 chr11 24998908 24999051 -96844805 + B1_Mm SINE Alu 5 147 0 5 775 261 0 0 0 chr11 24999073 24999102 -96844754 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 775 701 292 28 42 chr11 24999243 24999532 -96844324 + Lx9 LINE L1 6880 7164 -480 5 775 320 59 0 19 chr11 24999861 24999913 -96843943 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 5 775 1191 112 0 0 chr11 25000022 25000201 -96843655 + (CATTC)n Simple_repeat Simple_repeat 2 180 0 1 775 330 280 27 27 chr11 25001129 25001239 -96842617 + MLT1B LTR MaLR 2 111 -279 2 775 248 305 72 78 chr11 25001250 25001417 -96842439 + MLT1B LTR MaLR 67 232 -158 2 775 1162 290 49 19 chr11 25001937 25002303 -96841553 - MTD LTR MaLR -42 377 1 3 775 270 53 53 18 chr11 25002401 25002458 -96841398 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 4 775 203 179 54 0 chr11 25002463 25002519 -96841337 + A-rich Low_complexity Low_complexity 3 61 0 5 775 521 256 113 0 chr11 25002603 25002736 -96841120 - B3A SINE B2 -49 149 2 6 775 659 196 160 11 chr11 25003158 25003333 -96840523 + B3 SINE B2 1 201 -15 7 775 1187 62 0 0 chr11 25003421 25003566 -96840290 + B1_Mus2 SINE Alu 2 146 -1 8 775 511 237 54 43 chr11 25005009 25005194 -96838662 + B2_Mm2 SINE B2 1 187 -8 9 775 308 43 22 0 chr11 25006365 25006411 -96837445 + (TTTTTG)n Simple_repeat Simple_repeat 4 50 0 1 775 645 284 38 5 chr11 25007622 25007806 -96836050 - MLT1A0 LTR MaLR -17 348 159 1 775 432 0 0 0 chr11 25008112 25008160 -96835696 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 775 2293 45 3 0 chr11 25009147 25009434 -96834422 - L1Md_F2 LINE L1 -1 6581 6294 1 775 197 345 27 8 chr11 25011619 25011727 -96832129 + MIRc SINE MIR 24 134 -134 1 775 312 353 72 41 chr11 25012263 25012458 -96831398 - MLT1H1 LTR MaLR -323 232 32 1 775 251 28 28 0 chr11 25012657 25012693 -96831163 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 775 265 235 24 36 chr11 25012915 25012999 -96830857 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 1 775 387 0 0 0 chr11 25013014 25013057 -96830799 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 775 180 0 0 0 chr11 25013805 25013825 -96830031 + (A)n Simple_repeat Simple_repeat 1 20 0 1 775 453 116 0 0 chr11 25014041 25014110 -96829746 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 775 1126 178 40 158 chr11 25015467 25015602 -96828254 - Lx7 LINE L1 0 7696 7561 2 775 845 176 14 0 chr11 25015602 25015744 -96828112 + B1_Mus1 SINE Alu 1 144 -4 2 775 1126 178 40 158 chr11 25015744 25015982 -96827874 - Lx7 LINE L1 -136 7560 7367 2 775 201 162 27 0 chr11 25016028 25016065 -96827791 + GA-rich Low_complexity Low_complexity 2 39 0 2 775 759 212 36 6 chr11 25016065 25016231 -96827625 - Lx7 LINE L1 -351 7345 7175 2 775 1971 208 12 12 chr11 25017575 25017994 -96825862 - MTD LTR MaLR 0 419 1 2 775 349 323 58 43 chr11 25020768 25020976 -96822880 + MLT2B1 LTR ERVL 330 532 -24 2 775 576 77 0 0 chr11 25021050 25021128 -96822728 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 2 775 1433 73 0 0 chr11 25021130 25021321 -96822535 - L1Md_F2 LINE L1 -12 6570 6380 2 775 294 170 0 0 chr11 25021364 25021411 -96822445 + MLT2B1 LTR ERVL 517 563 0 2 775 406 314 52 74 chr11 25022964 25023274 -96820582 - HAL1 LINE L1 -1409 1098 796 2 775 224 171 0 68 chr11 25023442 25023486 -96820370 + RSINE1 SINE B4 56 96 -69 2 775 481 268 117 40 chr11 25023544 25023793 -96820063 - L1MC1 LINE L1 -53 6280 6013 3 775 194 263 0 10 chr11 25025745 25025841 -96818015 + (CATA)n Simple_repeat Simple_repeat 3 97 0 3 775 1975 170 17 20 chr11 25026158 25026507 -96817349 + ORR1B1 LTR MaLR 39 386 -8 3 775 465 19 0 0 chr11 25026509 25026563 -96817293 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 775 261 0 0 0 chr11 25026573 25026602 -96817254 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 3 775 193 309 18 0 chr11 25028567 25028622 -96815234 - MIRc SINE MIR -138 130 75 3 775 450 0 0 0 chr11 25028656 25028706 -96815150 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 775 458 246 16 33 chr11 25029730 25029852 -96814004 + PB1D7 SINE Alu 1 120 0 3 775 234 259 33 76 chr11 25030006 25030098 -96813758 + MTEa LTR MaLR 292 379 0 3 775 402 218 12 29 chr11 25031089 25031259 -96812597 + (CATATA)n Simple_repeat Simple_repeat 3 169 0 3 775 241 197 0 27 chr11 25031285 25031358 -96812498 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 3 775 5832 109 6 9 chr11 25031380 25032487 -96811369 + L1_Mus3 LINE L1 4929 6032 -606 4 775 441 0 0 0 chr11 25033483 25033532 -96810324 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 775 387 0 0 0 chr11 25033532 25033574 -96810282 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 775 462 304 28 48 chr11 25033578 25033723 -96810133 - B3 SINE B2 -53 163 22 4 775 1567 64 26 0 chr11 25033897 25034253 -96809603 - L1_Mus1 LINE L1 0 6567 6141 4 96 4391 59 4 12 chr11 25034263 25034825 -96809031 + L1_Mus1 LINE L1 6011 6567 0 4 776 182 208 0 59 chr11 25035354 25035405 -96808451 + L2a LINE L2 3367 3414 -12 4 776 294 344 31 15 chr11 25035659 25035789 -96808067 + L4 LINE RTE 672 803 -1226 4 776 26 74 0 0 chr11 25035922 25035976 -96807880 + AT_rich Low_complexity Low_complexity 1 54 0 4 776 543 31 0 0 chr11 25037024 25037089 -96806767 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 776 492 310 55 7 chr11 25037228 25037374 -96806482 + RSINE1 SINE B4 13 165 0 5 776 465 19 0 0 chr11 25037682 25037736 -96806120 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 776 389 208 0 0 chr11 25038577 25038654 -96805202 - ORR1D2 LTR MaLR -291 79 3 5 776 647 286 138 77 chr11 25038703 25038787 -96805069 - ORR1D2 LTR MaLR 0 370 284 5 776 888 10 0 0 chr11 25038787 25038888 -96804968 + (GA)n Simple_repeat Simple_repeat 2 102 0 5 776 647 286 138 77 chr11 25038888 25039005 -96804851 - ORR1D2 LTR MaLR -87 283 150 5 776 1292 57 28 6 chr11 25039005 25039181 -96804675 - B2_Mm2 SINE B2 -14 181 2 5 776 647 286 138 77 chr11 25039181 25039327 -96804529 - ORR1D2 LTR MaLR -221 149 3 5 776 201 178 0 0 chr11 25040695 25040740 -96803116 + CT-rich Low_complexity Low_complexity 2 46 0 5 776 2299 162 25 12 chr11 25041486 25041952 -96801904 + RLTR11A LTR ERVK 7 500 -27 5 776 204 132 0 26 chr11 25043913 25043952 -96799904 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 776 406 292 128 37 chr11 25044272 25044514 -96799342 - B4 SINE B4 -27 265 2 5 776 38 51 0 0 chr11 25044661 25044720 -96799136 + AT_rich Low_complexity Low_complexity 1 59 0 6 776 244 224 13 26 chr11 25045657 25045735 -96798121 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 776 229 304 13 0 chr11 25045817 25045896 -96797960 + (TA)n Simple_repeat Simple_repeat 1 80 0 6 776 414 0 0 0 chr11 25047765 25047811 -96796045 + (TCC)n Simple_repeat Simple_repeat 1 46 0 6 776 521 299 37 37 chr11 25048198 25048413 -96795443 - B3 SINE B2 0 216 2 6 776 21 36 0 0 chr11 25048574 25048602 -96795254 + AT_rich Low_complexity Low_complexity 1 28 0 6 776 24 0 0 0 chr11 25048752 25048776 -96795080 + AT_rich Low_complexity Low_complexity 1 24 0 6 776 446 319 21 7 chr11 25049572 25049714 -96794142 - B1F SINE Alu -5 144 1 6 776 736 288 43 14 chr11 25049744 25049952 -96793904 + B3 SINE B2 2 215 -1 6 776 722 288 8 8 chr11 25050260 25050498 -96793358 - L1_Rod LINE L1 -10 5837 5600 6 776 360 0 0 0 chr11 25050508 25050548 -96793308 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 7 776 1911 286 47 7 chr11 25050554 25051252 -96792604 - L1_Mur3 LINE L1 -626 5254 4529 7 776 398 291 62 38 chr11 25051256 25051467 -96792389 - L1MDa LINE L1 -815 5722 5507 7 776 338 264 0 86 chr11 25051775 25051891 -96791965 - L1M5 LINE L1 -1487 4659 4554 7 776 344 338 108 36 chr11 25052338 25052728 -96791128 - L1MDa LINE L1 -3594 2943 2526 7 776 309 311 118 28 chr11 25053537 25053749 -96790107 - L1MDa LINE L1 -4867 1766 1536 7 776 216 78 19 56 chr11 25054228 25054282 -96789574 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 7 776 299 136 17 0 chr11 25054835 25054894 -96788962 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 776 222 316 109 7 chr11 25055059 25055196 -96788660 - MIR SINE MIR -28 234 84 7 776 450 0 0 0 chr11 25056227 25056277 -96787579 + (GA)n Simple_repeat Simple_repeat 2 51 0 7 776 222 37 0 0 chr11 25057431 25057458 -96786398 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 7 776 319 350 194 17 chr11 25059207 25059567 -96784289 + L2 LINE L2 2074 2497 -922 7 776 193 312 102 51 chr11 25059745 25059843 -96784013 - L2c LINE L2 0 3387 3285 8 776 200 122 0 24 chr11 25060301 25060343 -96783513 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 776 20508 162 49 9 chr11 25060981 25065748 -96778108 + L1Md_F2 LINE L1 625 5588 -298 8 776 8169 38 4 2 chr11 25065749 25066729 -96777127 + L1Md_F2 LINE L1 5587 6568 -14 8 776 261 109 0 0 chr11 25066941 25066987 -96776869 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 776 479 82 14 0 chr11 25067417 25067490 -96776366 + (TTG)n Simple_repeat Simple_repeat 2 75 0 8 776 207 305 84 0 chr11 25067491 25067586 -96776270 - MIRb SINE MIR -51 217 115 8 776 271 264 71 117 chr11 25070063 25070094 -96773762 - B2_Mm2 SINE B2 -7 188 1 8 776 527 283 18 42 chr11 25070094 25070260 -96773596 - RSINE1 SINE B4 -2 163 2 8 776 2695 284 77 25 chr11 25070579 25071500 -96772356 - RCHARR1 DNA MER1_type -3 971 3 8 776 339 169 0 0 chr11 25071679 25071750 -96772106 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 776 780 11 0 0 chr11 25073795 25073884 -96769972 + (GA)n Simple_repeat Simple_repeat 2 90 0 9 776 227 356 148 0 chr11 25076586 25076701 -96767155 - MIR SINE MIR -119 143 12 9 776 2764 70 0 0 chr11 25076745 25077100 -96766756 - L1_Mus1 LINE L1 0 6567 6213 9 776 3887 61 0 1 chr11 25077100 25077813 -96766043 + L1_Mus1 LINE L1 5377 6088 -479 9 776 1186 289 50 12 chr11 25078340 25078679 -96765177 - MLT1A0 LTR MaLR -13 352 1 9 776 549 30 0 0 chr11 25078705 25078772 -96765084 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 776 233 349 70 0 chr11 25078774 25078860 -96764996 - PB1D7 SINE Alu -6 114 23 9 776 207 146 0 0 chr11 25080030 25080071 -96763785 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 776 546 16 0 0 chr11 25080773 25080836 -96763020 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 776 600 340 59 53 chr11 25081874 25082178 -96761678 - LTR16E1 LTR ERVL -3 535 230 9 776 775 179 21 28 chr11 25082635 25082779 -96761077 - B1_Mur4 SINE Alu -7 143 1 9 776 367 316 8 8 chr11 25084113 25084231 -96759625 + ORR1E LTR MaLR 1 118 -241 1 776 686 262 40 6 chr11 25084788 25084961 -96758895 + B3A SINE B2 4 182 -16 1 776 279 0 0 0 chr11 25085905 25085936 -96757920 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 776 318 87 0 0 chr11 25087020 25087066 -96756790 + (A)n Simple_repeat Simple_repeat 1 46 0 1 776 216 0 0 0 chr11 25087697 25087721 -96756135 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 776 212 122 24 0 chr11 25087884 25087925 -96755931 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 776 239 368 7 81 chr11 25087994 25088130 -96755726 + MLT1A LTR MaLR 33 158 -216 1 776 660 250 0 7 chr11 25088470 25088611 -96755245 - B1_Mur1 SINE Alu -5 144 5 1 776 223 185 0 44 chr11 25088878 25088946 -96754910 + T-rich Low_complexity Low_complexity 2 66 0 1 776 284 366 119 0 chr11 25088989 25089090 -96754766 - PB1D10 SINE Alu -1 116 4 1 776 276 319 65 32 chr11 25092240 25092363 -96751493 - L2a LINE L2 -2 3424 3298 1 776 215 31 0 30 chr11 25092809 25092842 -96751014 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 776 632 231 66 0 chr11 25092842 25092963 -96750893 - B1_Mur2 SINE Alu -13 136 8 1 776 360 310 81 40 chr11 25092963 25092990 -96750866 - ID_B1 SINE B4 -13 211 58 1 776 189 180 17 138 chr11 25093068 25093126 -96750730 + L2c LINE L2 3329 3379 -8 1 776 1027 309 67 10 chr11 25093424 25093810 -96750046 + L3 LINE CR1 3614 4021 -468 1 776 447 289 58 15 chr11 25094512 25094649 -96749207 - RSINE1 SINE B4 -11 154 12 1 776 2857 129 110 30 chr11 25094804 25095331 -96748525 - RMER4B LTR ERVK 0 585 17 1 776 485 246 6 0 chr11 25095404 25095575 -96748281 + GA-rich Low_complexity Low_complexity 4 175 0 1 776 261 0 0 0 chr11 25095741 25095770 -96748086 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 776 286 77 0 0 chr11 25096374 25096413 -96747443 - U2 snRNA snRNA -149 39 1 1 776 37987 25 2 6 chr11 25096587 25102629 -96741227 - L1Md_A LINE L1 0 6582 627 1 776 1020 224 19 0 chr11 25102784 25102989 -96740867 - B3 SINE B2 -5 211 3 1 776 237 267 8 25 chr11 25104362 25104481 -96739375 + T-rich Low_complexity Low_complexity 5 121 0 1 776 21 0 0 0 chr11 25104698 25104719 -96739137 + AT_rich Low_complexity Low_complexity 1 21 0 1 776 561 182 352 19 chr11 25106327 25106489 -96737367 - B3 SINE B2 0 216 1 1 776 1088 97 0 0 chr11 25106648 25106793 -96737063 + B1_Mus1 SINE Alu 3 147 -1 1 776 242 115 0 19 chr11 25107982 25108035 -96735821 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 776 647 25 12 0 chr11 25108035 25108116 -96735740 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 1 776 1229 285 63 41 chr11 25108568 25109326 -96734530 - L1MB7 LINE L1 -62 6122 5348 1 776 949 214 49 62 chr11 25109343 25109567 -96734289 + URR1A DNA MER1_type 4 224 -2 1 776 638 258 37 21 chr11 25109571 25109761 -96734095 + B3A SINE B2 3 195 -3 1 776 301 329 14 42 chr11 25109787 25109807 -96734049 - L1M4b LINE L1 -817 6189 6170 1 776 2942 51 38 3 chr11 25109807 25110178 -96733678 - L1_Mus1 LINE L1 0 6567 6184 1 776 301 329 14 42 chr11 25110178 25110300 -96733556 - L1M4b LINE L1 -837 6169 6052 1 776 7026 96 9 11 chr11 25110306 25110365 -96733491 - L1_Mus3 LINE L1 -6 6632 6575 1 776 3015 103 67 2 chr11 25110365 25110540 -96733316 - MT2C_Mm LTR ERVL 0 475 300 1 776 583 48 24 0 chr11 25110540 25110623 -96733233 + (GA)n Simple_repeat Simple_repeat 1 85 0 1 776 3015 103 67 2 chr11 25110623 25110893 -96732963 - MT2C_Mm LTR ERVL -176 299 2 1 776 9407 123 5 11 chr11 25110893 25113222 -96730634 - L1_Mus3 LINE L1 -64 6574 4258 1 776 265 314 22 0 chr11 25113255 25113392 -96730464 - L1M4b LINE L1 -1027 5979 5840 1 776 603 0 0 0 chr11 25113460 25113527 -96730329 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 1 776 995 111 0 37 chr11 25113539 25113726 -96730130 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 776 235 210 235 0 chr11 25113774 25113855 -96730001 - B3 SINE B2 -2 214 115 1 776 574 288 67 117 chr11 25113941 25114421 -96729435 - RLTR12B LTR ERVK -44 484 29 1 776 496 238 14 7 chr11 25114428 25114576 -96729280 - MYSERV-int LTR ERVK -6 6544 6396 1 776 407 281 83 31 chr11 25114827 25114990 -96728866 - B3 SINE B2 -33 162 2 1 776 3581 63 6 13 chr11 25115037 25115506 -96728350 + L1_Mus1 LINE L1 6097 6562 -5 1 776 792 0 0 0 chr11 25115506 25115594 -96728262 + (GAA)n Simple_repeat Simple_repeat 2 89 0 1 776 345 332 139 50 chr11 25115699 25116022 -96727834 - L1M4b LINE L1 -4939 2163 1812 1 776 278 279 57 57 chr11 25116060 25116235 -96727621 - L1M4b LINE L1 -5764 1570 1396 1 776 8415 13 0 0 chr11 25116232 25117325 -96726531 - L1Md_A LINE L1 0 6582 5490 1 776 479 304 98 47 chr11 25117325 25117622 -96726234 - L1M4b LINE L1 -5923 1411 1100 1 776 1113 242 169 53 chr11 25117917 25118520 -96725336 - Lx9 LINE L1 -30 7614 6942 1 776 499 261 39 44 chr11 25118514 25118718 -96725138 - Lx9 LINE L1 -1183 6461 6259 1 776 489 69 11 22 chr11 25118724 25118813 -96725043 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 776 213 39 0 0 chr11 25118994 25119020 -96724836 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 776 346 220 0 0 chr11 25119027 25119086 -96724770 - B1_Mur3 SINE Alu -14 135 77 1 776 350 312 111 42 chr11 25120408 25120669 -96723187 - MER115 DNA Tip100 0 693 415 1 776 234 0 0 0 chr11 25121262 25121288 -96722568 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1 776 290 232 58 0 chr11 25124120 25124189 -96719667 + B1F SINE Alu 5 77 -72 1 776 717 73 0 0 chr11 25125206 25125302 -96718554 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 776 326 284 0 0 chr11 25125759 25125840 -96718016 + CT-rich Low_complexity Low_complexity 4 84 0 1 776 436 377 48 0 chr11 25126446 25126592 -96717264 - RSINE1 SINE B4 -10 155 3 1 776 774 67 0 0 chr11 25127014 25127118 -96716738 - BC1_Mm scRNA scRNA -48 104 1 1 776 34 24 0 0 chr11 25127939 25127980 -96715876 + AT_rich Low_complexity Low_complexity 1 41 0 1 776 4926 219 55 27 chr11 25128063 25128259 -96715597 - Lx7 LINE L1 0 7696 7485 1 776 186 43 0 0 chr11 25128259 25128282 -96715574 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 776 4926 219 55 27 chr11 25128282 25129345 -96714511 - Lx7 LINE L1 -212 7484 6402 1 776 498 146 20 59 chr11 25129349 25129451 -96714405 + ORR1C2 LTR MaLR 2 99 -285 1 776 4041 68 43 2 chr11 25129457 25129987 -96713869 - L1_Mus1 LINE L1 0 6567 6016 1 776 3295 66 0 2 chr11 25129987 25130554 -96713302 + L1_Mus1 LINE L1 5457 6022 -545 1 776 1064 202 143 23 chr11 25130554 25130635 -96713221 + ORR1C2 LTR MaLR 95 197 -187 1 776 1005 89 0 22 chr11 25130635 25130819 -96713037 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 776 267 31 0 0 chr11 25130819 25130851 -96713005 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 776 1064 202 143 23 chr11 25130851 25131026 -96712830 + ORR1C2 LTR MaLR 198 382 -2 1 776 2470 227 84 28 chr11 25131033 25131242 -96712614 - Lx7 LINE L1 -1317 6379 6165 1 776 414 0 0 0 chr11 25131242 25131288 -96712568 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 776 2470 229 90 27 chr11 25131288 25131893 -96711963 - Lx7 LINE L1 -1532 6164 5520 1 776 445 92 13 13 chr11 25133146 25133223 -96710633 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 776 26 50 0 0 chr11 25133280 25133320 -96710536 + AT_rich Low_complexity Low_complexity 1 40 0 1 776 237 170 0 0 chr11 25134325 25134372 -96709484 - L1MD2 LINE L1 -14 6345 6299 1 776 402 332 62 4 chr11 25134795 25135055 -96708801 - L1MD1 LINE L1 -347 5895 5621 1 776 213 39 0 0 chr11 25135187 25135213 -96708643 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1 776 371 370 20 40 chr11 25135266 25135418 -96708438 - RSINE1 SINE B4 -16 149 1 1 776 1080 287 40 95 chr11 25135616 25136016 -96707840 + MTE2b LTR MaLR 2 379 0 1 776 561 64 0 0 chr11 25136763 25136841 -96707015 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 776 2492 224 71 156 chr11 25137260 25138377 -96705479 - RMER1B Other Other 0 1066 45 1 776 26 0 0 0 chr11 25138733 25138759 -96705097 + AT_rich Low_complexity Low_complexity 1 26 0 1 776 242 116 0 23 chr11 25138950 25138994 -96704862 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 1 776 559 296 14 20 chr11 25139003 25139151 -96704705 - B1F SINE Alu 0 149 3 1 776 289 289 164 55 chr11 25139519 25139720 -96704136 + LTR48 LTR ERV1 1 223 -564 1 776 1415 203 74 22 chr11 25140063 25140375 -96703481 - RMER19C LTR ERVK 0 611 284 1 776 1205 163 9 0 chr11 25140377 25140598 -96703258 - Lx2 LINE L1 0 6997 6775 1 776 6424 119 31 18 chr11 25140596 25141328 -96702528 - Lx2 LINE L1 -352 6645 5895 1 776 2884 81 2 25 chr11 25141328 25141733 -96702123 + MTA_Mm LTR MaLR 1 396 0 1 776 7424 81 15 69 chr11 25141733 25142894 -96700962 + MTA_Mm-int LTR MaLR 1 1098 0 1 776 2821 69 45 3 chr11 25142894 25143274 -96700582 + MTA_Mm LTR MaLR 1 396 0 1 776 6424 150 13 9 chr11 25143274 25144045 -96699811 - Lx2 LINE L1 -1103 5894 5129 1 776 983 194 26 62 chr11 25144046 25144313 -96699543 - RMER19C LTR ERVK -293 318 1 1 776 566 345 52 0 chr11 25144315 25144509 -96699347 + ID_B1 SINE B4 11 214 -10 1 776 915 51 0 0 chr11 25144510 25144627 -96699229 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 1 776 642 337 84 13 chr11 25144659 25145291 -96698565 + L1M2 LINE L1 4598 5274 -869 1 776 459 0 0 0 chr11 25145378 25145429 -96698427 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 776 679 294 100 100 chr11 25145456 25145857 -96697999 + RMER6B LTR ERVK 61 461 0 1 776 183 232 0 0 chr11 25145875 25145931 -96697925 + A-rich Low_complexity Low_complexity 1 56 0 1 776 474 239 0 0 chr11 25145969 25146078 -96697778 + Lx7 LINE L1 7248 7356 -340 1 776 459 0 0 0 chr11 25146910 25146961 -96696895 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 776 701 219 49 0 chr11 25147055 25147178 -96696678 + B1_Mur1 SINE Alu 1 129 -20 1 776 22 35 0 0 chr11 25148082 25148111 -96695745 + AT_rich Low_complexity Low_complexity 1 29 0 1 776 714 24 0 0 chr11 25148169 25148253 -96695603 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 1 776 221 57 29 0 chr11 25148255 25148290 -96695566 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1 776 326 23 0 23 chr11 25148323 25148367 -96695489 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 776 392 328 60 11 chr11 25148369 25148634 -96695222 - B4A SINE B4 -14 278 1 1 776 286 384 95 7 chr11 25148686 25148990 -96694866 + MER63D DNA AcHobo 308 638 -423 1 776 252 287 56 65 chr11 25149272 25149380 -96694476 - B1F SINE Alu -11 138 32 1 776 1929 203 74 0 chr11 25150530 25150909 -96692947 + MTC LTR MaLR 7 413 -8 1 776 206 206 15 0 chr11 25150996 25151064 -96692792 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 776 198 0 0 0 chr11 25151324 25151346 -96692510 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 776 21 36 0 0 chr11 25151816 25151844 -96692012 + AT_rich Low_complexity Low_complexity 1 28 0 1 776 1047 71 7 14 chr11 25152595 25152737 -96691119 + B1_Mus1 SINE Alu 5 145 -3 2 776 225 0 0 0 chr11 25153104 25153129 -96690727 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 776 407 200 98 20 chr11 25153146 25153248 -96690608 - Lx9 LINE L1 -381 7263 7154 2 776 459 0 0 0 chr11 25153508 25153559 -96690297 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 776 282 29 0 0 chr11 25153822 25153857 -96689999 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 776 243 0 0 0 chr11 25153857 25153883 -96689973 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 776 22 0 0 0 chr11 25154389 25154411 -96689445 + AT_rich Low_complexity Low_complexity 1 22 0 2 776 306 175 12 0 chr11 25154959 25155030 -96688826 + B1_Mus2 SINE Alu 47 120 0 2 776 3456 282 53 22 chr11 25155282 25156534 -96687322 - Lx9 LINE L1 -101 7543 6253 2 776 186 240 0 0 chr11 25156542 25156592 -96687264 + (TATG)n Simple_repeat Simple_repeat 4 53 0 2 776 586 244 0 20 chr11 25156623 25156871 -96686985 + (TATATG)n Simple_repeat Simple_repeat 1 242 0 2 776 518 231 88 23 chr11 25157054 25157284 -96686572 - Lx9 LINE L1 -1625 6019 5773 2 776 240 244 0 0 chr11 25158882 25158927 -96684929 + (CGTG)n Simple_repeat Simple_repeat 2 46 0 2 776 192 360 90 36 chr11 25158955 25159122 -96684734 + MIRb SINE MIR 17 192 -76 2 776 777 257 44 0 chr11 25159428 25159634 -96684222 - B3 SINE B2 0 216 2 2 776 182 214 231 77 chr11 25160202 25160293 -96683563 - MIRb SINE MIR -78 190 86 2 776 383 163 43 61 chr11 25161089 25161252 -96682604 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 2 776 483 325 46 50 chr11 25162244 25162503 -96681353 - MER2 DNA MER2_type -3 342 85 2 776 528 148 0 0 chr11 25163739 25163847 -96680009 + (TCC)n Simple_repeat Simple_repeat 1 108 0 2 776 280 111 0 65 chr11 25163838 25163915 -96679941 + T-rich Low_complexity Low_complexity 2 73 0 2 776 293 353 13 105 chr11 25164202 25164227 -96679629 + ID_B1 SINE B4 60 197 -27 2 776 428 282 16 79 chr11 25164227 25164354 -96679502 + B1F SINE Alu 1 119 -30 2 776 860 209 265 7 chr11 25164366 25164660 -96679196 + ORR1D1 LTR MaLR 1 370 -4 2 776 432 0 0 0 chr11 25164764 25164812 -96679044 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1 2381 318 98 16 chr11 25165372 25166533 -96677323 - Lx8 LINE L1 -31 7442 6186 2 777 406 297 138 46 chr11 25167182 25167422 -96676434 - MLT1J2 LTR MaLR -144 304 43 2 777 1071 97 0 0 chr11 25167706 25167860 -96675996 + (TTTC)n Simple_repeat Simple_repeat 3 156 0 2 777 983 41 0 0 chr11 25167879 25168000 -96675856 - B1_Mus2 SINE Alu -5 142 22 2 777 462 18 0 0 chr11 25168011 25168066 -96675790 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 777 435 295 79 4 chr11 25168735 25168928 -96674928 + L1MC1 LINE L1 5761 5959 -374 2 777 213 39 0 0 chr11 25168928 25168954 -96674902 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 777 435 295 79 4 chr11 25168954 25169012 -96674844 + L1MC1 LINE L1 5960 6030 -303 2 777 1037 306 72 46 chr11 25169024 25169672 -96674184 + Lx8 LINE L1 6807 7471 -2 2 777 309 109 0 0 chr11 25170653 25170699 -96673157 + (T)n Simple_repeat Simple_repeat 1 46 0 2 777 239 356 93 26 chr11 25171541 25171734 -96672122 + L2a LINE L2 3018 3223 -203 2 777 229 271 0 0 chr11 25171765 25171824 -96672032 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 777 423 0 0 0 chr11 25173295 25173342 -96670514 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 777 352 342 34 97 chr11 25174609 25174784 -96669072 + RSINE1 SINE B4 2 165 0 2 777 42 0 0 0 chr11 25174857 25174899 -96668957 + AT_rich Low_complexity Low_complexity 1 42 0 2 777 441 287 165 76 chr11 25175695 25176065 -96667791 - RMER15 LTR ERVL -172 403 1 2 777 30 45 0 0 chr11 25176664 25176708 -96667148 + AT_rich Low_complexity Low_complexity 1 44 0 2 777 1584 236 66 27 chr11 25176922 25177483 -96666373 + L1_Mur3 LINE L1 3618 4200 -1680 2 777 226 279 95 48 chr11 25180152 25180299 -96663557 + L1M2 LINE L1 4918 5071 -1072 2 777 299 235 142 13 chr11 25180435 25180619 -96663237 - L1MEd LINE L1 -1472 4674 4472 2 777 1134 296 75 62 chr11 25180642 25181016 -96662840 + MTEa LTR MaLR 1 379 0 2 777 402 345 34 7 chr11 25181032 25181181 -96662675 + MTE-int LTR MaLR 55 207 -1373 2 777 366 129 0 0 chr11 25181195 25181257 -96662599 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 777 280 219 31 15 chr11 25181260 25181325 -96662531 + MTE-int LTR MaLR 279 344 -1236 2 777 2249 286 111 21 chr11 25181327 25182095 -96661761 + MTE-int LTR MaLR 741 1577 -3 2 777 561 290 0 14 chr11 25182164 25182311 -96661545 + MTEa LTR MaLR 181 325 -54 2 777 311 254 100 0 chr11 25182410 25182520 -96661336 - L1MEd LINE L1 -1889 4257 4137 2 777 186 103 0 0 chr11 25182722 25182751 -96661105 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 777 352 336 14 0 chr11 25183359 25183499 -96660357 + B1F SINE Alu 3 144 -5 2 777 333 0 0 0 chr11 25183509 25183546 -96660310 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 777 2892 76 60 0 chr11 25183767 25184164 -96659692 - BGLII LTR ERVK 0 421 1 2 777 237 108 0 0 chr11 25184171 25184208 -96659648 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 777 241 299 8 33 chr11 25184260 25184381 -96659475 + T-rich Low_complexity Low_complexity 1 118 0 2 777 236 240 0 26 chr11 25184535 25184612 -96659244 + T-rich Low_complexity Low_complexity 5 79 0 2 777 229 286 20 10 chr11 25184845 25184944 -96658912 - L1MEd LINE L1 -4422 1744 1645 2 777 242 172 108 15 chr11 25184956 25185021 -96658835 - Zaphod DNA Tip100 -1168 2863 2793 2 777 339 334 132 51 chr11 25185401 25185811 -96658045 - L1MEd LINE L1 -5060 1076 634 2 777 530 170 0 18 chr11 25186471 25186585 -96657271 + (CATATA)n Simple_repeat Simple_repeat 1 112 0 2 777 23 0 0 0 chr11 25188057 25188080 -96655776 + AT_rich Low_complexity Low_complexity 1 23 0 2 777 345 256 28 11 chr11 25190718 25190846 -96653010 - MLT1H2 LTR MaLR 0 555 390 2 777 295 344 70 81 chr11 25190926 25191198 -96652658 - MLT1H2 LTR MaLR -260 289 21 2 777 391 287 32 16 chr11 25191361 25191485 -96652371 - B1F SINE Alu -1 148 23 2 777 358 326 62 7 chr11 25191769 25192044 -96651812 + L1MC LINE L1 4576 4865 -1281 2 777 274 333 96 60 chr11 25192085 25192251 -96651605 - B4A SINE B4 -39 253 82 2 777 741 122 0 0 chr11 25192251 25192366 -96651490 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 2 777 1172 82 6 0 chr11 25192368 25192538 -96651318 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 2 777 271 314 83 0 chr11 25192633 25192802 -96651054 - L1MD LINE L1 -751 5395 5213 2 777 8226 89 13 2 chr11 25192795 25194740 -96649116 - L1_Mus2 LINE L1 -2 6564 4610 2 777 281 276 146 40 chr11 25194731 25195033 -96648823 - L1MC LINE L1 -912 5234 4901 2 777 412 328 96 0 chr11 25195226 25195384 -96648472 + B3A SINE B2 6 180 -18 2 777 501 17 0 0 chr11 25195390 25195448 -96648408 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 777 271 60 20 20 chr11 25195976 25196027 -96647829 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2 777 1226 42 0 0 chr11 25196032 25196174 -96647682 - B1_Mm SINE Alu -5 142 1 2 777 235 333 69 75 chr11 25196338 25196497 -96647359 - MamRep605 Unknown Unknown -603 273 116 2 777 564 15 0 0 chr11 25197258 25197323 -96646533 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 2 777 309 26 0 0 chr11 25197439 25197477 -96646379 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 777 1219 20 14 7 chr11 25198141 25198289 -96645567 - B1_Mur4 SINE Alu 0 150 2 2 777 273 363 27 27 chr11 25198292 25198442 -96645414 + MLT1E1 LTR MaLR 494 643 -11 2 777 765 146 11 27 chr11 25198738 25198921 -96644935 + GA-rich Low_complexity Low_complexity 1 180 0 2 777 1715 181 43 84 chr11 25199077 25199446 -96644410 + ORR1B1 LTR MaLR 41 394 0 2 777 249 109 0 0 chr11 25199848 25199894 -96643962 + (T)n Simple_repeat Simple_repeat 1 46 0 2 777 396 0 0 0 chr11 25200002 25200046 -96643810 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 777 387 0 0 0 chr11 25200259 25200302 -96643554 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 777 226 356 41 25 chr11 25201999 25202120 -96641736 + MER5A DNA MER1_type 45 167 -22 2 777 17479 165 97 13 chr11 25203214 25209083 -96634773 - L1_Mus3 LINE L1 -3 6635 234 2 777 24 0 0 0 chr11 25209135 25209159 -96634697 + AT_rich Low_complexity Low_complexity 1 24 0 2 777 22 0 0 0 chr11 25210111 25210133 -96633723 + AT_rich Low_complexity Low_complexity 1 22 0 2 777 657 225 51 17 chr11 25211686 25211862 -96631994 - B3A SINE B2 -16 182 1 2 777 376 333 32 26 chr11 25211968 25212122 -96631734 + RSINE1 SINE B4 9 163 -2 2 777 192 77 0 0 chr11 25213241 25213267 -96630589 + (C)n Simple_repeat Simple_repeat 1 26 0 2 777 626 25 0 12 chr11 25213798 25213879 -96629977 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 2 777 202 231 0 0 chr11 25214636 25214675 -96629181 + GA-rich Low_complexity Low_complexity 2 40 0 2 777 255 395 18 0 chr11 25215852 25215961 -96627895 + PB1D7 SINE Alu 5 115 -5 2 777 200 163 23 0 chr11 25215970 25216013 -96627843 + GA-rich Low_complexity Low_complexity 2 45 0 2 777 987 297 21 75 chr11 25216848 25217068 -96626788 + ORR1D2 LTR MaLR 3 224 -146 2 777 1194 68 0 0 chr11 25217068 25217216 -96626640 + B1_Mus1 SINE Alu 1 148 0 2 777 987 297 21 75 chr11 25217216 25217384 -96626472 + ORR1D2 LTR MaLR 225 370 0 2 777 208 366 117 38 chr11 25219661 25219874 -96623982 + MIRb SINE MIR 8 237 -31 2 777 7098 101 30 2 chr11 25220036 25221350 -96622506 + L1_Mus4 LINE L1 5255 6629 -7 2 777 270 276 39 48 chr11 25222976 25223079 -96620777 - MTEa LTR MaLR 0 379 278 2 777 660 160 0 0 chr11 25223661 25223780 -96620076 + CT-rich Low_complexity Low_complexity 4 122 0 2 777 2091 261 45 71 chr11 25223866 25224570 -96619286 - Lx6 LINE L1 -15 7445 6760 2 777 2771 234 46 19 chr11 25224619 25225269 -96618587 - RMER1C Other Other -1 1341 674 2 777 603 165 0 0 chr11 25227087 25227196 -96616660 + GA-rich Low_complexity Low_complexity 1 109 0 2 777 799 238 37 21 chr11 25227453 25227469 -96616387 - B3A SINE B2 -6 192 178 2 777 423 0 0 0 chr11 25227469 25227516 -96616340 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 777 799 238 37 21 chr11 25227516 25227688 -96616168 - B3A SINE B2 -21 177 1 2 777 246 217 35 46 chr11 25227739 25227826 -96616030 + T-rich Low_complexity Low_complexity 4 89 0 3 777 240 298 22 39 chr11 25228621 25228799 -96615057 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 3 777 696 210 0 0 chr11 25229461 25229739 -96614117 + (TG)n Simple_repeat Simple_repeat 1 278 0 3 777 512 293 107 33 chr11 25229760 25230032 -96613824 - B4A SINE B4 0 292 1 3 777 40 49 0 0 chr11 25230083 25230144 -96613712 + AT_rich Low_complexity Low_complexity 1 61 0 3 777 5841 52 0 15 chr11 25231615 25232359 -96611497 - L1_Mus1 LINE L1 0 6567 5835 3 777 273 208 38 25 chr11 25233615 25233694 -96610162 - L1M5 LINE L1 -724 5449 5370 3 777 195 284 72 81 chr11 25234321 25234432 -96609424 - MIRb SINE MIR -40 228 119 3 777 343 359 73 50 chr11 25234568 25234952 -96608904 + L1ME1 LINE L1 5484 5876 -303 3 777 182 180 40 0 chr11 25234981 25235031 -96608825 + CT-rich Low_complexity Low_complexity 1 52 0 3 777 353 307 54 36 chr11 25235069 25235292 -96608564 + L1ME1 LINE L1 5938 6164 -15 3 777 461 58 14 0 chr11 25235965 25236034 -96607822 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 777 347 365 90 20 chr11 25238247 25238448 -96605408 + MIR SINE MIR 24 238 -24 3 777 534 31 0 0 chr11 25239496 25239560 -96604296 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 777 519 17 0 0 chr11 25241119 25241179 -96602677 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 777 725 0 12 0 chr11 25241179 25241263 -96602593 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 777 257 371 22 56 chr11 25241789 25241969 -96601887 + MIRb SINE MIR 56 229 -39 3 777 247 345 58 8 chr11 25242210 25242330 -96601526 - MLT1L LTR MaLR -366 244 119 3 777 229 389 55 84 chr11 25243000 25243067 -96600789 - B3A SINE B2 0 198 3 3 777 551 333 0 0 chr11 25243067 25243202 -96600654 - RSINE1 SINE B4 -27 138 4 3 777 608 145 30 0 chr11 25244379 25244510 -96599346 + Lx3_Mus LINE L1 6875 7009 0 3 777 217 308 0 0 chr11 25244582 25244647 -96599209 + (TATG)n Simple_repeat Simple_repeat 4 68 0 3 777 716 271 108 62 chr11 25245854 25246161 -96597695 - MTEb LTR MaLR -5 374 54 3 777 433 321 14 7 chr11 25246249 25246387 -96597469 - B1F2 SINE Alu -1 148 10 3 777 204 40 0 0 chr11 25247956 25247981 -96595875 + (A)n Simple_repeat Simple_repeat 1 25 0 3 777 531 45 0 0 chr11 25249279 25249345 -96594511 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 777 666 208 0 0 chr11 25249373 25249522 -96594334 + CT-rich Low_complexity Low_complexity 3 151 0 3 777 288 374 32 45 chr11 25250681 25250835 -96593021 + FordPrefect DNA Tip100 147 298 -1385 3 777 205 171 0 0 chr11 25250978 25251013 -96592843 + T-rich Low_complexity Low_complexity 4 38 0 3 777 23 68 0 0 chr11 25251015 25251059 -96592797 + AT_rich Low_complexity Low_complexity 1 44 0 3 777 263 28 0 27 chr11 25252383 25252420 -96591436 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 777 5725 87 45 2 chr11 25252422 25253856 -96590000 - L1VL4 LINE L1 -1841 1718 212 3 777 1171 341 131 41 chr11 25253901 25254851 -96589005 + FordPrefect DNA Tip100 454 1475 -208 3 777 189 0 0 0 chr11 25254851 25254872 -96588984 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 777 1171 297 144 50 chr11 25254872 25255049 -96588807 + FordPrefect DNA Tip100 1476 1682 -1 3 777 242 197 33 0 chr11 25255953 25256014 -96587842 + (CATG)n Simple_repeat Simple_repeat 3 65 0 3 777 332 315 9 0 chr11 25258314 25258425 -96585431 + PB1D10 SINE Alu 2 113 -4 3 777 1841 235 81 3 chr11 25258535 25259103 -96584753 - RCHARR1 DNA MER1_type -2 972 361 3 777 601 333 95 8 chr11 25259180 25259422 -96584434 - B4A SINE B4 -23 269 7 3 777 483 320 142 0 chr11 25259421 25259674 -96584182 - RCHARR1 DNA MER1_type -603 371 83 3 777 1050 58 7 0 chr11 25260125 25260264 -96583592 + L1_Mus2 LINE L1 6426 6565 -1 3 777 522 323 34 43 chr11 25262634 25262841 -96581015 - MLT1I LTR MaLR -7 404 200 3 777 192 135 0 0 chr11 25263457 25263494 -96580362 + (CCCCCT)n Simple_repeat Simple_repeat 6 42 0 3 777 304 268 57 101 chr11 25263619 25263777 -96580079 - HAL1-3A_ME LINE L1 -419 2439 2289 3 777 1170 184 9 0 chr11 25264016 25264239 -96579617 - URR1B DNA MER1_type 0 225 1 3 777 24 0 0 0 chr11 25265747 25265771 -96578085 + AT_rich Low_complexity Low_complexity 1 24 0 3 777 381 93 0 0 chr11 25267931 25267985 -96575871 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 777 4819 73 19 3 chr11 25268182 25268823 -96575033 - L1Md_F2 LINE L1 0 6582 5932 3 777 2856 77 2 18 chr11 25268823 25269273 -96574583 + L1Md_F2 LINE L1 5477 5921 -661 3 777 259 251 76 13 chr11 25269273 25269365 -96574491 - B4A SINE B4 -194 98 1 3 777 207 0 0 0 chr11 25270077 25270100 -96573756 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 777 288 0 0 0 chr11 25270100 25270131 -96573725 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 777 35748 22 2 7 chr11 25270449 25275652 -96568204 + L1Md_T LINE L1 416 5586 -297 3 777 8319 33 6 0 chr11 25275652 25276642 -96567214 + L1Md_T LINE L1 5587 6582 0 3 777 237 270 16 16 chr11 25277004 25277068 -96566788 + CT-rich Low_complexity Low_complexity 2 65 0 3 777 200 242 15 29 chr11 25277276 25277344 -96566512 + GA-rich Low_complexity Low_complexity 5 71 0 3 777 464 313 110 29 chr11 25277450 25277723 -96566133 + MLT1C LTR MaLR 6 300 -167 3 777 315 0 0 0 chr11 25279693 25279728 -96564128 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 777 1422 6 17 0 chr11 25279760 25279935 -96563921 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 777 834 30 0 0 chr11 25280666 25280767 -96563089 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 777 376 338 61 74 chr11 25282053 25282350 -96561506 + Charlie1 DNA MER1_type 110 402 -2379 3 777 585 252 7 30 chr11 25282837 25282972 -96560884 + B1_Mur2 SINE Alu 17 148 -1 3 777 718 176 58 7 chr11 25283011 25283148 -96560708 + B1_Mur4 SINE Alu 1 144 -6 3 777 536 0 16 0 chr11 25283150 25283214 -96560642 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 3 777 310 365 7 45 chr11 25283347 25283502 -96560354 + RSINE1 SINE B4 3 151 -14 3 777 270 0 0 0 chr11 25283503 25283533 -96560323 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 3 777 249 33 0 0 chr11 25285236 25285266 -96558590 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 777 321 296 93 44 chr11 25286293 25286498 -96557358 - MIR SINE MIR -24 238 24 3 777 230 188 124 43 chr11 25286518 25286616 -96557240 + MIRm SINE MIR 39 145 -63 3 777 280 59 39 0 chr11 25286859 25286910 -96556946 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 3 777 21 0 0 0 chr11 25288846 25288867 -96554989 + AT_rich Low_complexity Low_complexity 1 21 0 3 777 716 252 0 36 chr11 25288878 25289043 -96554813 - RSINE1 SINE B4 -6 159 1 3 777 609 72 0 0 chr11 25289262 25289345 -96554511 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 777 582 75 0 0 chr11 25289775 25289855 -96554001 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 777 423 0 0 0 chr11 25290551 25290598 -96553258 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 777 279 0 0 0 chr11 25290806 25290837 -96553019 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 777 234 0 0 0 chr11 25290837 25290862 -96552994 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 777 209 315 43 11 chr11 25291067 25291160 -96552696 - MIR SINE MIR -81 181 86 3 777 200 163 0 44 chr11 25291202 25291247 -96552609 + A-rich Low_complexity Low_complexity 3 45 0 3 777 180 0 0 0 chr11 25292475 25292495 -96551361 + (T)n Simple_repeat Simple_repeat 1 20 0 3 777 4282 61 9 9 chr11 25292795 25293358 -96550498 - L1Md_F2 LINE L1 0 6582 6020 3 777 183 42 0 0 chr11 25293750 25293774 -96550082 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 777 357 260 217 72 chr11 25294213 25294310 -96549546 - RMER30 DNA MER1_type -2 200 81 3 777 444 19 0 0 chr11 25294310 25294363 -96549493 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 777 357 260 217 72 chr11 25294363 25294431 -96549425 - RMER30 DNA MER1_type -122 80 12 3 777 361 321 117 5 chr11 25295098 25295295 -96548561 + MER58A DNA MER1_type 2 220 -4 3 777 291 337 55 64 chr11 25295375 25295594 -96548262 + MER46C DNA MER2_type 73 289 -49 3 777 2025 242 147 62 chr11 25295880 25296759 -96547097 - RMER17B LTR ERVK -9 899 1 3 778 470 325 75 32 chr11 25297811 25298253 -96545603 + L1MC4 LINE L1 6688 7148 -894 3 778 266 361 79 39 chr11 25298282 25298409 -96545447 + PB1D10 SINE Alu 1 132 -17 3 778 658 291 122 5 chr11 25298409 25298803 -96545053 + L1MC4 LINE L1 7189 7628 -414 3 778 621 256 56 11 chr11 25298995 25299173 -96544683 - MTEa LTR MaLR 0 379 194 3 778 650 314 21 34 chr11 25299145 25299379 -96544477 - MTE2b LTR MaLR -98 281 51 3 778 527 343 30 78 chr11 25299385 25300006 -96543850 + Lx9 LINE L1 6955 7471 -2 3 778 249 139 0 0 chr11 25300011 25300054 -96543802 + (CAA)n Simple_repeat Simple_repeat 1 43 0 3 778 24 32 0 0 chr11 25300161 25300192 -96543664 + AT_rich Low_complexity Low_complexity 1 31 0 3 778 23 0 0 0 chr11 25300439 25300462 -96543394 + AT_rich Low_complexity Low_complexity 1 23 0 3 778 6007 78 22 26 chr11 25301791 25302662 -96541194 - L1_Mus4 LINE L1 0 6636 5770 3 778 207 175 43 100 chr11 25303218 25303288 -96540568 - L2a LINE L2 -62 3364 3299 3 778 254 95 0 23 chr11 25303963 25304006 -96539850 + (GAA)n Simple_repeat Simple_repeat 3 44 0 3 778 194 167 60 40 chr11 25304377 25304427 -96539429 + L3 LINE CR1 1083 1133 -3356 3 778 213 65 0 0 chr11 25304815 25304846 -96539010 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 778 1110 67 0 0 chr11 25304847 25304982 -96538874 - B1_Mus2 SINE Alu -12 135 1 3 778 1021 40 0 0 chr11 25305786 25305911 -96537945 + L1Md_F2 LINE L1 5461 5585 -298 3 778 7799 55 10 3 chr11 25305912 25306890 -96536966 + L1Md_F2 LINE L1 5587 6571 -11 3 778 24 32 0 0 chr11 25306914 25306945 -96536911 + AT_rich Low_complexity Low_complexity 1 31 0 3 778 1687 21 0 0 chr11 25307723 25307911 -96535945 + B2_Mm1t SINE B2 1 188 -5 3 778 31 58 0 0 chr11 25309519 25309571 -96534285 + AT_rich Low_complexity Low_complexity 1 52 0 3 778 589 250 14 14 chr11 25309573 25309719 -96534137 + B1_Mur1 SINE Alu 2 147 -2 3 778 299 302 37 52 chr11 25309721 25309857 -96533999 - MER103 DNA DNA -30 136 3 4 778 215 250 18 0 chr11 25311150 25311206 -96532650 + GA-rich Low_complexity Low_complexity 2 58 0 4 778 233 384 25 15 chr11 25311608 25311809 -96532047 + MIR SINE MIR 5 207 -55 4 778 889 217 95 0 chr11 25313288 25313477 -96530379 - B3 SINE B2 -8 208 2 4 778 2466 42 0 0 chr11 25314426 25314734 -96529122 - L1_Mm LINE L1 -160 5723 5416 4 778 710 299 95 26 chr11 25314746 25315005 -96528851 - L1_Mur3 LINE L1 -959 4921 4631 4 778 324 0 0 0 chr11 25315005 25315041 -96528815 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 778 710 299 95 26 chr11 25315041 25315234 -96528622 - L1_Mur3 LINE L1 -1250 4630 4439 4 778 8595 166 27 5 chr11 25315314 25316997 -96526859 + L1_Mur2 LINE L1 3577 5295 -582 4 778 2484 198 24 103 chr11 25316996 25317677 -96526179 + Lx5 LINE L1 6424 7050 0 4 778 22 0 0 0 chr11 25318290 25318312 -96525544 + AT_rich Low_complexity Low_complexity 1 22 0 4 778 205 27 26 51 chr11 25318348 25318387 -96525469 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 4 778 858 186 0 29 chr11 25318394 25318599 -96525257 - RLTR19-int LTR ERVK -4265 1872 1674 4 778 489 251 107 2 chr11 25318601 25318774 -96525082 - MTD LTR MaLR -52 369 162 4 778 8009 90 49 20 chr11 25318800 25320167 -96523689 - MusHAL1 LINE L1 -1306 1406 1 4 778 1612 94 60 0 chr11 25320160 25320227 -96523629 - L1VL4 LINE L1 -5513 789 719 4 778 180 0 0 0 chr11 25320227 25320247 -96523609 + (CAT)n Simple_repeat Simple_repeat 2 21 0 4 778 1612 94 60 0 chr11 25320247 25320446 -96523410 - L1VL4 LINE L1 -5584 718 509 4 778 6272 96 8 4 chr11 25320445 25321378 -96522478 - L1_Mm LINE L1 -129 5754 4819 4 778 297 0 0 0 chr11 25322183 25322216 -96521640 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 778 241 260 39 29 chr11 25324559 25324662 -96519194 + L1MB1 LINE L1 5907 6010 -158 4 778 27957 145 30 3 chr11 25326417 25328160 -96515696 + L1_Mus2 LINE L1 365 2357 -3526 4 778 597 64 0 0 chr11 25328160 25328238 -96515618 + (GAA)n Simple_repeat Simple_repeat 2 79 0 4 778 27957 121 10 2 chr11 25328238 25328757 -96515099 + L1_Mus2 LINE L1 2358 2886 -2997 4 778 423 0 0 0 chr11 25328757 25328804 -96515052 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 778 27957 108 13 7 chr11 25328804 25332463 -96511393 + L1_Mus2 LINE L1 2887 6566 0 4 778 239 231 0 30 chr11 25333362 25333429 -96510427 + C-rich Low_complexity Low_complexity 2 66 0 4 778 1995 172 19 24 chr11 25337066 25337436 -96506420 - ORR1C1 LTR MaLR -10 368 1 4 778 340 328 104 24 chr11 25338685 25338810 -96505046 + RSINE1 SINE B4 2 136 -29 4 778 196 211 14 14 chr11 25338830 25338902 -96504954 + GA-rich Low_complexity Low_complexity 1 72 0 4 778 612 340 63 16 chr11 25339494 25339810 -96504046 + MLT1A0 LTR MaLR 28 372 -2 4 778 640 327 14 24 chr11 25339984 25340191 -96503665 + MER58A DNA MER1_type 19 223 -1 4 778 233 336 26 52 chr11 25340793 25340909 -96502947 + MER94 DNA AcHobo 22 134 0 4 778 181 260 0 107 chr11 25341262 25341318 -96502538 - L4 LINE RTE -678 1351 1302 4 778 272 27 27 0 chr11 25341981 25342018 -96501838 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 778 339 257 68 0 chr11 25343837 25343911 -96499945 + PB1D10 SINE Alu 1 79 -38 4 778 938 161 32 32 chr11 25345623 25345809 -96498047 - B2_Mm2 SINE B2 -8 187 2 4 778 754 286 60 28 chr11 25347848 25348096 -96495760 - MER2 DNA MER2_type -3 342 87 4 778 632 130 38 8 chr11 25348108 25348240 -96495616 + CT-rich Low_complexity Low_complexity 4 139 0 4 778 529 307 81 105 chr11 25348382 25348753 -96495103 - MLT1B LTR MaLR -14 376 15 4 778 681 247 56 19 chr11 25350231 25350392 -96493464 + MLT1A1 LTR MaLR 241 407 -1 4 778 451 353 48 21 chr11 25350488 25350676 -96493180 - MLT1J LTR MaLR -259 253 61 4 778 697 324 107 63 chr11 25350680 25351451 -96492405 - L1MEf LINE L1 -4899 1734 875 4 778 229 344 65 26 chr11 25351464 25351774 -96492082 - L1MEf LINE L1 -5650 877 556 4 778 22 0 0 0 chr11 25353424 25353446 -96490410 + AT_rich Low_complexity Low_complexity 1 22 0 4 778 4187 77 20 32 chr11 25354182 25354773 -96489083 + MT2B2 LTR ERVL 1 584 0 4 778 1907 65 0 0 chr11 25355204 25355450 -96488406 - L1_Mus1 LINE L1 -207 6360 6115 4 778 1623 72 0 0 chr11 25355451 25355692 -96488164 + L1_Mus1 LINE L1 6350 6567 0 4 778 2112 269 63 31 chr11 25356053 25356957 -96486899 - L1MA6 LINE L1 -1 6299 5367 4 778 772 266 113 19 chr11 25357075 25357454 -96486402 - L1MA6 LINE L1 -971 5172 4758 4 778 315 315 119 0 chr11 25358161 25358304 -96485552 - RSINE1 SINE B4 -2 163 4 4 778 229 346 32 0 chr11 25358489 25358645 -96485211 + L1MEe LINE L1 135 295 -4559 4 778 343 325 57 102 chr11 25358986 25359459 -96484397 + L1MEe LINE L1 640 1091 -3763 4 778 320 346 104 0 chr11 25359497 25359679 -96484177 + HAL1-3A_ME LINE L1 2239 2439 -419 4 778 211 242 16 31 chr11 25359875 25359939 -96483917 + GA-rich Low_complexity Low_complexity 2 64 0 4 778 373 357 119 30 chr11 25361580 25361883 -96481973 - LTR33 LTR ERVL -31 484 155 4 778 204 40 0 0 chr11 25362940 25362965 -96480891 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 778 252 0 0 0 chr11 25362967 25362995 -96480861 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 778 263 247 112 0 chr11 25363160 25363249 -96480607 + L1MB1 LINE L1 5941 6039 -150 4 778 847 290 110 39 chr11 25363443 25363934 -96479922 + L1MCa LINE L1 385 910 -5598 4 778 186 103 0 0 chr11 25363978 25364007 -96479849 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 778 303 161 0 0 chr11 25364004 25364060 -96479796 + (TAG)n Simple_repeat Simple_repeat 1 56 0 4 778 463 375 89 89 chr11 25364131 25364459 -96479397 + MLT2B1 LTR ERVL 1 335 -185 4 778 504 0 0 0 chr11 25364459 25364515 -96479341 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 4 778 441 375 89 89 chr11 25364515 25364529 -96479327 + MLT2B1 LTR ERVL 333 334 -181 4 778 931 82 0 7 chr11 25364529 25364664 -96479192 - L1_Mus2 LINE L1 0 6566 6433 4 778 1328 149 44 178 chr11 25364666 25365139 -96478717 - RMER17C LTR ERVK 0 410 1 4 778 441 375 89 89 chr11 25365139 25365287 -96478569 + MLT2B1 LTR ERVL 335 495 -20 4 778 419 192 310 0 chr11 25365325 25365496 -96478360 + ORR1C2 LTR MaLR 6 229 -155 4 778 4008 258 65 32 chr11 25365481 25366660 -96477196 + ORR1C2-int LTR MaLR 153 1370 0 4 778 1456 232 75 3 chr11 25366660 25366837 -96477019 + ORR1C2 LTR MaLR 1 187 -197 4 778 456 19 0 0 chr11 25366837 25366890 -96476966 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 778 1456 232 75 3 chr11 25366890 25367070 -96476786 + ORR1C2 LTR MaLR 188 384 0 4 778 26 50 0 0 chr11 25367729 25367769 -96476087 + AT_rich Low_complexity Low_complexity 1 40 0 4 778 293 202 25 0 chr11 25367777 25367856 -96476000 - Lx9 LINE L1 -70 7574 7494 4 778 243 0 0 0 chr11 25367856 25367883 -96475973 + (CATA)n Simple_repeat Simple_repeat 2 28 0 4 778 878 151 161 63 chr11 25367916 25368121 -96475735 - URR1B DNA MER1_type 0 225 1 4 778 3370 228 42 7 chr11 25368121 25368963 -96474893 - Lx9 LINE L1 -196 7448 6578 4 778 1212 130 87 0 chr11 25370736 25370944 -96472912 + URR1A DNA MER1_type 1 226 0 4 778 1138 81 0 26 chr11 25371050 25371202 -96472654 + B1_Mus1 SINE Alu 1 148 0 4 778 1275 209 152 15 chr11 25372982 25373318 -96470538 - ORR1C2 LTR MaLR -2 382 1 4 778 1666 227 51 19 chr11 25373318 25373906 -96469950 - ORR1C2-int LTR MaLR 0 1509 962 4 778 2253 167 58 2 chr11 25375284 25375681 -96468175 + MTC LTR MaLR 3 421 0 4 778 251 314 125 72 chr11 25375686 25375906 -96467950 + L1MC1 LINE L1 5431 5694 -639 4 778 629 215 13 34 chr11 25375906 25376055 -96467801 + B1_Mus1 SINE Alu 3 148 0 4 778 251 314 125 72 chr11 25376055 25376322 -96467534 + L1MC1 LINE L1 5695 5944 -389 4 778 434 328 17 0 chr11 25376414 25376588 -96467268 + L1MC1 LINE L1 6156 6332 -1 4 778 1075 176 15 77 chr11 25377162 25377564 -96466292 + L1_Mur3 LINE L1 1061 1435 -4445 4 778 207 0 0 0 chr11 25379060 25379083 -96464773 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 4 778 251 272 81 71 chr11 25379127 25379226 -96464630 + MLT1J1 LTR MaLR 26 125 -319 4 778 608 107 19 46 chr11 25379329 25379437 -96464419 - ORR1D1 LTR MaLR -264 110 6 4 778 1130 126 6 11 chr11 25381283 25381459 -96462397 + B2_Mm2 SINE B2 3 177 -18 4 778 777 251 107 5 chr11 25381540 25381736 -96462120 + B3 SINE B2 1 216 0 4 778 630 344 63 20 chr11 25382284 25382539 -96461317 + B4A SINE B4 23 288 -4 4 778 396 200 32 11 chr11 25383366 25383453 -96460403 + PB1D9 SINE Alu 1 98 -51 4 778 1092 128 0 0 chr11 25383464 25383643 -96460213 + (GA)n Simple_repeat Simple_repeat 1 179 0 4 778 243 342 8 8 chr11 25383644 25383661 -96460195 + polypurine Low_complexity Low_complexity 1 17 0 4 778 1056 128 0 0 chr11 25383661 25383840 -96460016 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 778 258 308 10 10 chr11 25383840 25383866 -96459990 + polypurine Low_complexity Low_complexity 1 26 0 4 778 1128 111 0 0 chr11 25383866 25384046 -96459810 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 778 243 342 8 8 chr11 25384046 25384106 -96459750 + polypurine Low_complexity Low_complexity 44 104 0 4 778 1005 9 0 0 chr11 25384106 25384220 -96459636 + (GGGAA)n Simple_repeat Simple_repeat 1 114 0 4 778 243 342 8 8 chr11 25384220 25384232 -96459624 + polypurine Low_complexity Low_complexity 105 116 0 4 778 1906 238 49 10 chr11 25384506 25385144 -96458712 - L1ME2 LINE L1 -196 5983 5326 4 778 323 310 135 5 chr11 25385461 25385646 -96458210 - L1ME2 LINE L1 -1214 4932 4724 4 778 603 338 109 19 chr11 25385662 25385982 -96457874 + MLT1A LTR MaLR 1 349 -25 4 778 352 304 78 45 chr11 25386350 25386599 -96457257 - L1ME2 LINE L1 -1792 4354 4093 4 778 243 0 0 0 chr11 25386599 25386626 -96457230 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 778 352 341 74 72 chr11 25386626 25386825 -96457031 - L1ME2 LINE L1 -2054 4092 3909 4 778 582 270 27 31 chr11 25386989 25387249 -96456607 - L1MC LINE L1 -2519 3627 3369 4 778 1464 246 54 96 chr11 25387942 25388536 -96455320 - RMER4B LTR ERVK 0 585 17 4 778 287 324 27 9 chr11 25388845 25388957 -96454899 - PB1D10 SINE Alu -3 114 1 4 778 198 91 0 0 chr11 25389018 25389051 -96454805 + (TATG)n Simple_repeat Simple_repeat 4 36 0 4 778 495 48 0 0 chr11 25390024 25390086 -96453770 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 778 583 248 7 76 chr11 25391815 25391959 -96451897 + B3 SINE B2 81 214 -2 4 778 589 296 147 27 chr11 25392240 25392573 -96451283 - MTEa LTR MaLR -5 374 2 4 778 228 322 8 69 chr11 25392914 25393044 -96450812 - MIRb SINE MIR -29 239 118 4 778 351 0 0 0 chr11 25393596 25393635 -96450221 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 778 432 0 0 0 chr11 25394016 25394064 -96449792 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 778 524 87 0 11 chr11 25394517 25394610 -96449246 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 778 608 270 20 20 chr11 25394626 25394777 -96449079 - B3A SINE B2 -27 171 21 5 778 838 186 136 5 chr11 25395918 25396102 -96447754 + URR1A DNA MER1_type 1 208 -18 5 778 600 53 0 0 chr11 25397228 25397304 -96446552 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 5 778 217 401 75 9 chr11 25398474 25398688 -96445168 - MIR SINE MIR -2 260 33 5 778 399 41 0 0 chr11 25399602 25399651 -96444205 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 5 778 387 269 18 44 chr11 25399859 25399972 -96443884 - PB1D10 SINE Alu 0 117 8 5 778 274 356 39 44 chr11 25400036 25400218 -96443638 - MARNA DNA Mariner -78 508 328 5 778 3235 164 58 3 chr11 25400248 25401125 -96442731 + Lx3A LINE L1 16 1041 -5943 5 778 15665 92 19 7 chr11 25401113 25403580 -96440276 + Lx3A LINE L1 2552 5046 -840 5 778 8580 103 17 9 chr11 25403588 25405091 -96438765 + Lx3A LINE L1 5468 6978 -3 5 778 233 211 19 19 chr11 25405266 25405319 -96438537 + MARNA DNA Mariner 439 491 -95 5 778 216 0 0 0 chr11 25406000 25406024 -96437832 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 778 237 108 0 0 chr11 25406024 25406060 -96437796 + (CG)n Simple_repeat Simple_repeat 1 37 0 5 778 216 0 0 0 chr11 25407380 25407404 -96436452 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 778 946 252 0 0 chr11 25407418 25407628 -96436228 - B3 SINE B2 -2 214 5 5 778 198 0 0 0 chr11 25407775 25407797 -96436059 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 778 439 343 94 58 chr11 25408160 25408644 -96435212 - MLT1H LTR MaLR -32 457 1 5 778 698 320 51 39 chr11 25409166 25409521 -96434335 + MLT1A0 LTR MaLR 3 361 -4 5 778 528 93 0 0 chr11 25409700 25409775 -96434081 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 778 559 325 76 5 chr11 25410173 25410371 -96433485 + MER58A DNA MER1_type 2 213 -11 5 778 429 316 86 78 chr11 25410917 25411161 -96432695 - MLT1A0 LTR MaLR -80 285 40 5 778 31074 81 13 0 chr11 25411680 25416827 -96427029 + L1Md_F2 LINE L1 374 5585 -298 5 778 6717 96 19 38 chr11 25416828 25417841 -96426015 + L1Md_F2 LINE L1 5587 6580 -2 5 778 256 240 26 13 chr11 25419366 25419442 -96424414 + MLT1E3 LTR MaLR 89 165 -459 5 778 369 315 35 41 chr11 25419571 25419740 -96424116 + MLT1E3 LTR MaLR 353 520 -104 5 778 267 31 0 0 chr11 25420570 25420602 -96423254 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 778 953 240 32 28 chr11 25420873 25421126 -96422730 + Tigger5 DNA MER2_type 2086 2339 -67 5 778 189 195 0 0 chr11 25421730 25421771 -96422085 + CT-rich Low_complexity Low_complexity 2 42 0 5 778 25 0 0 0 chr11 25421958 25421983 -96421873 + AT_rich Low_complexity Low_complexity 1 25 0 5 778 261 0 0 0 chr11 25423812 25423841 -96420015 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 778 302 22 0 62 chr11 25423839 25423887 -96419969 + (T)n Simple_repeat Simple_repeat 1 45 0 5 778 293 345 26 9 chr11 25423957 25424071 -96419785 + MER58B DNA MER1_type 191 306 -35 5 778 357 162 0 0 chr11 25424460 25424528 -96419328 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 778 407 0 57 0 chr11 25424528 25424581 -96419275 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 5 778 1439 67 33 9 chr11 25425538 25425749 -96418107 - L1Md_F3 LINE L1 0 6584 6369 5 778 287 190 0 0 chr11 25425907 25425965 -96417891 + L1MA7 LINE L1 6233 6290 -1 5 778 562 321 37 16 chr11 25426076 25426263 -96417593 + MLT1A LTR MaLR 1 191 -183 5 778 366 264 98 49 chr11 25426314 25426497 -96417359 + MLT1A LTR MaLR 181 372 -2 5 97 405 0 0 0 chr11 25427940 25427985 -96415871 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 5 779 444 137 0 0 chr11 25428673 25428753 -96415103 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 779 264 30 0 0 chr11 25428753 25428786 -96415070 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 779 444 137 0 0 chr11 25428786 25428800 -96415056 + (TC)n Simple_repeat Simple_repeat 1 14 0 5 779 336 343 71 0 chr11 25428834 25428933 -96414923 - PB1D10 SINE Alu -9 108 3 5 779 414 0 0 0 chr11 25431602 25431648 -96412208 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 779 434 110 27 0 chr11 25433082 25433155 -96410701 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 5 779 24 0 0 0 chr11 25437780 25437804 -96406052 + AT_rich Low_complexity Low_complexity 1 24 0 5 779 889 323 83 30 chr11 25438107 25438503 -96405353 - MTD LTR MaLR -2 417 1 5 779 186 250 22 22 chr11 25438700 25438745 -96405111 - L2c LINE L2 -77 3310 3266 5 779 311 335 45 70 chr11 25440265 25440463 -96403393 - MER63A DNA AcHobo -8 202 10 5 779 302 0 26 0 chr11 25440812 25440850 -96403006 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5 779 590 78 9 29 chr11 25442369 25442474 -96401382 + (TTCC)n Simple_repeat Simple_repeat 1 103 0 5 779 644 304 7 0 chr11 25443253 25443401 -96400455 - MER58A DNA MER1_type -39 185 37 5 779 3565 125 7 18 chr11 25444368 25444936 -96398920 - L1_Mus3 LINE L1 -1 6637 6076 5 779 5707 132 30 9 chr11 25444936 25446766 -96397090 - L1VL2 LINE L1 -1686 1929 62 5 779 399 21 0 0 chr11 25447835 25447883 -96395973 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 779 1507 66 0 0 chr11 25448132 25448330 -96395526 - L1Md_F2 LINE L1 -359 6223 6026 5 779 2543 70 3 0 chr11 25448330 25448658 -96395198 + L1_Mus1 LINE L1 6239 6567 0 5 779 333 280 86 23 chr11 25449106 25449234 -96394622 - B1F1 SINE Alu -2 147 12 5 779 2648 39 0 26 chr11 25450200 25450547 -96393309 + ORR1A0 LTR MaLR 1 338 -8 5 779 1749 273 120 33 chr11 25451031 25451796 -96392060 + RMER1B Other Other 64 895 -171 5 779 878 116 6 24 chr11 25451931 25452099 -96391757 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 5 779 494 207 14 35 chr11 25452101 25452246 -96391610 + RMER1B Other Other 925 1066 0 5 779 19237 159 10 17 chr11 25452512 25456848 -96387008 + L1_Mus3 LINE L1 571 4876 -1007 5 779 1828 49 0 0 chr11 25456848 25457071 -96386785 - L1_Mus1 LINE L1 -3 6564 6342 5 779 19237 153 10 17 chr11 25457071 25457140 -96386716 + L1_Mus3 LINE L1 4877 4931 -952 5 779 39322 4 2 0 chr11 25457145 25463448 -96380408 - L1Md_A LINE L1 0 6582 265 5 779 5958 100 6 49 chr11 25463452 25464103 -96379753 + L1_Mus3 LINE L1 4924 5562 -321 5 779 2575 87 82 5 chr11 25464103 25464483 -96379373 + L1_Mus2 LINE L1 6157 6565 -1 5 779 7234 92 5 6 chr11 25464483 25465585 -96378271 + L1_Mus3 LINE L1 5563 6638 0 5 779 6842 118 3 7 chr11 25465585 25466868 -96376988 + L1_Mus4 LINE L1 5288 6567 -69 5 779 342 0 0 0 chr11 25466868 25466906 -96376950 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 779 6842 112 4 8 chr11 25466906 25466975 -96376881 + L1_Mus4 LINE L1 6568 6635 -1 5 779 180 0 0 0 chr11 25468605 25468625 -96375231 + (T)n Simple_repeat Simple_repeat 1 20 0 5 779 26 30 0 0 chr11 25469082 25469115 -96374741 + AT_rich Low_complexity Low_complexity 1 33 0 5 779 200 323 31 31 chr11 25469597 25469693 -96374163 - MIRc SINE MIR -123 145 50 5 779 264 332 84 98 chr11 25470064 25470338 -96373518 + MLT1A LTR MaLR 1 270 -104 5 779 323 275 12 0 chr11 25470585 25470665 -96373191 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 779 320 330 0 36 chr11 25470882 25470992 -96372864 + PB1D10 SINE Alu 11 116 -1 5 779 263 211 53 0 chr11 25471021 25471097 -96372759 + L1MA9 LINE L1 6082 6161 -151 5 779 236 366 37 0 chr11 25472434 25472516 -96371340 - PB1 SINE Alu -32 95 11 5 779 507 73 0 0 chr11 25472567 25472635 -96371221 + (TGAA)n Simple_repeat Simple_repeat 1 68 0 5 779 21 0 0 0 chr11 25474176 25474197 -96369659 + AT_rich Low_complexity Low_complexity 1 21 0 5 779 5429 94 70 1 chr11 25474692 25475476 -96368380 + L1_Mus3 LINE L1 5795 6632 -6 5 779 32 57 0 0 chr11 25475513 25475566 -96368290 + AT_rich Low_complexity Low_complexity 1 53 0 5 779 388 316 18 0 chr11 25476617 25476731 -96367125 - PB1D10 SINE Alu 0 117 2 5 779 973 328 52 20 chr11 25476779 25477127 -96366729 + MTE2b LTR MaLR 1 359 -20 5 779 243 0 0 0 chr11 25477589 25477616 -96366240 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 779 21972 149 30 8 chr11 25478333 25483256 -96360600 + L1VL1 LINE L1 350 5383 -500 5 779 455 0 18 0 chr11 25483313 25483368 -96360488 + (TATG)n Simple_repeat Simple_repeat 2 57 0 5 779 898 264 103 48 chr11 25483401 25483752 -96360104 + ORR1D2 LTR MaLR 1 370 0 5 779 207 0 0 0 chr11 25485435 25485458 -96358398 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 779 26 0 0 0 chr11 25486177 25486203 -96357653 + AT_rich Low_complexity Low_complexity 1 26 0 5 779 210 378 70 16 chr11 25486825 25486954 -96356902 + B3 SINE B2 64 199 -17 5 779 22 0 0 0 chr11 25488224 25488246 -96355610 + AT_rich Low_complexity Low_complexity 1 22 0 5 779 288 0 0 0 chr11 25488815 25488847 -96355009 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 779 226 348 94 52 chr11 25489017 25489250 -96354606 + MIR SINE MIR 18 260 -2 5 779 383 0 21 0 chr11 25491333 25491380 -96352476 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 779 248 30 30 0 chr11 25492700 25492733 -96351123 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 779 383 231 0 9 chr11 25492733 25492842 -96351014 + G-rich Low_complexity Low_complexity 4 111 0 5 779 279 0 0 0 chr11 25492923 25492954 -96350902 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 779 837 74 0 0 chr11 25493376 25493498 -96350358 + (GA)n Simple_repeat Simple_repeat 1 122 0 5 779 532 301 84 0 chr11 25493846 25493989 -96349867 + B4 SINE B4 2 156 -136 5 779 303 241 0 0 chr11 25496037 25496178 -96347678 + (TG)n Simple_repeat Simple_repeat 2 142 0 5 779 290 291 59 17 chr11 25497091 25497210 -96346646 + MER5A1 DNA MER1_type 4 127 -39 5 779 331 288 24 41 chr11 25498339 25498462 -96345394 + MIRb SINE MIR 55 175 -93 5 779 2227 50 0 25 chr11 25498668 25498953 -96344903 - L1_Mus1 LINE L1 0 6567 6290 5 779 380 343 7 0 chr11 25499056 25499093 -96344763 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 779 555 103 0 0 chr11 25499093 25499190 -96344666 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 5 779 380 343 7 0 chr11 25499190 25499292 -96344564 + (CA)n Simple_repeat Simple_repeat 2 103 0 5 779 24 77 0 0 chr11 25502523 25502575 -96341281 + AT_rich Low_complexity Low_complexity 1 52 0 1 779 1384 257 73 45 chr11 25502905 25503307 -96340549 - MTD LTR MaLR -17 402 4 2 779 573 274 122 42 chr11 25503868 25504081 -96339775 + B4A SINE B4 38 267 -25 3 779 222 37 0 0 chr11 25504194 25504221 -96339635 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 779 444 147 0 0 chr11 25504295 25504370 -96339486 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 779 621 140 30 0 chr11 25504516 25504616 -96339240 + Lx4A LINE L1 6834 6936 -122 6 779 1387 124 102 30 chr11 25505529 25505795 -96338061 - Lx4A LINE L1 -3 7055 6771 7 779 669 239 7 0 chr11 25507822 25507960 -96335896 - B1_Mus2 SINE Alu -8 139 1 8 779 319 373 60 32 chr11 25509024 25509273 -96334583 - MER115 DNA Tip100 -12 681 426 9 779 451 331 124 65 chr11 25509433 25509772 -96334084 - ORR1E LTR MaLR 0 359 1 1 779 2691 29 2 213 chr11 25510240 25510732 -96333124 - RLTR10 LTR ERVK -2 388 1 1 779 15797 25 7 14 chr11 25510732 25512692 -96331164 - RLTR10-int LTR ERVK -1 1986 41 1 779 2923 15 0 43 chr11 25512702 25513054 -96330802 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 779 206 216 0 38 chr11 25514065 25514118 -96329738 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 1 779 301 132 0 19 chr11 25514346 25514400 -96329456 + B1_Mur4 SINE Alu 1 53 -97 1 779 393 336 75 50 chr11 25514461 25514837 -96329019 + L1ME1 LINE L1 5767 6151 -28 1 779 25 0 0 0 chr11 25514854 25514879 -96328977 + AT_rich Low_complexity Low_complexity 1 25 0 1 779 508 170 339 0 chr11 25514968 25515080 -96328776 + B1_Mur4 SINE Alu 1 150 0 1 779 572 212 93 0 chr11 25515572 25515690 -96328166 - B1_Mur3 SINE Alu -20 129 1 1 779 726 246 97 20 chr11 25516017 25516212 -96327644 - B4A SINE B4 -80 212 3 1 779 206 156 0 22 chr11 25516762 25516808 -96327048 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 779 639 338 6 0 chr11 25517494 25517651 -96326205 - RSINE1 SINE B4 -4 161 4 2 779 324 0 0 0 chr11 25518203 25518239 -96325617 + (A)n Simple_repeat Simple_repeat 1 36 0 2 779 239 324 0 0 chr11 25519983 25520051 -96323805 + PB1D7 SINE Alu 1 68 -52 2 779 187 290 83 31 chr11 25520330 25520426 -96323430 - MIRm SINE MIR -8 268 168 2 779 209 33 33 0 chr11 25520431 25520461 -96323395 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 779 180 0 0 0 chr11 25520473 25520493 -96323363 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 779 1175 36 0 0 chr11 25520576 25520713 -96323143 + B1_Mm SINE Alu 1 137 -10 2 779 228 35 0 0 chr11 25520713 25520742 -96323114 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 779 229 274 0 0 chr11 25520809 25520860 -96322996 + MER58C DNA MER1_type 163 213 -2 2 779 422 65 16 0 chr11 25521004 25521066 -96322790 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 779 313 156 26 0 chr11 25521218 25521295 -96322561 + GA-rich Low_complexity Low_complexity 3 81 0 3 779 358 333 74 32 chr11 25521535 25521752 -96322104 + Charlie23a DNA MER1_type 38 263 -76 3 779 4876 28 0 0 chr11 25522365 25522929 -96320927 - L1Md_F2 LINE L1 0 6582 6019 3 779 401 257 26 26 chr11 25524337 25524386 -96319470 - RMER15 LTR ERVL -136 439 392 3 779 243 0 0 0 chr11 25524386 25524413 -96319443 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 779 401 257 26 26 chr11 25524413 25524479 -96319377 - RMER15 LTR ERVL -184 391 324 3 779 229 282 29 0 chr11 25524830 25524917 -96318939 - ID2 SINE ID -48 104 16 3 779 27 0 0 0 chr11 25525402 25525429 -96318427 + AT_rich Low_complexity Low_complexity 1 27 0 3 779 1150 83 0 16 chr11 25525537 25525720 -96318136 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 779 1293 227 78 0 chr11 25525732 25526053 -96317803 - Lx8 LINE L1 -154 7319 6974 3 779 291 28 0 0 chr11 25526969 25527005 -96316851 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 779 273 302 35 11 chr11 25527033 25527120 -96316736 - 5S rRNA rRNA -31 90 2 4 779 189 0 0 0 chr11 25528236 25528257 -96315599 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4 779 315 153 0 106 chr11 25529888 25529954 -96313902 + B1_Mur4 SINE Alu 84 142 -8 4 779 26 50 0 0 chr11 25530097 25530137 -96313719 + AT_rich Low_complexity Low_complexity 1 40 0 4 779 378 0 0 0 chr11 25530216 25530258 -96313598 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 779 1761 300 23 25 chr11 25530293 25531022 -96312834 - Lx9 LINE L1 -235 7409 6682 4 779 229 208 0 40 chr11 25531061 25531111 -96312745 - B3 SINE B2 -5 211 164 4 779 351 150 0 0 chr11 25531125 25531185 -96312671 + (T)n Simple_repeat Simple_repeat 1 60 0 4 779 1151 75 0 0 chr11 25531185 25531331 -96312525 - B1_Mus1 SINE Alu 0 148 3 4 779 464 336 115 0 chr11 25531334 25531629 -96312227 - Lx9 LINE L1 -956 6688 6360 4 779 342 0 0 0 chr11 25531662 25531700 -96312156 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 779 31 0 0 0 chr11 25531711 25531742 -96312114 + AT_rich Low_complexity Low_complexity 1 31 0 5 779 206 162 27 0 chr11 25531923 25531960 -96311896 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 5 779 575 299 141 87 chr11 25532577 25532932 -96310924 + MTE2a LTR MaLR 1 374 -5 5 779 532 312 44 0 chr11 25533607 25533812 -96310044 - B3 SINE B2 0 216 3 5 779 402 286 52 47 chr11 25533915 25534083 -96309773 - B3A SINE B2 -18 180 10 5 779 572 262 70 16 chr11 25534748 25534934 -96308922 + Lx8 LINE L1 6961 7156 -317 5 779 24 53 0 0 chr11 25535292 25535330 -96308526 + AT_rich Low_complexity Low_complexity 1 38 0 5 779 1575 208 20 17 chr11 25536191 25536538 -96307318 + RLTR15 LTR ERVK 1 348 -11 5 779 198 0 0 0 chr11 25538415 25538437 -96305419 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 5 779 22 0 0 0 chr11 25539093 25539115 -96304741 + AT_rich Low_complexity Low_complexity 1 22 0 6 779 324 83 0 0 chr11 25539129 25539177 -96304679 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 779 976 128 0 27 chr11 25540755 25540913 -96302943 + GA-rich Low_complexity Low_complexity 1 155 0 6 779 1051 124 0 11 chr11 25540913 25541092 -96302764 + (GGGA)n Simple_repeat Simple_repeat 4 180 0 6 779 976 128 0 27 chr11 25541092 25541118 -96302738 + polypurine Low_complexity Low_complexity 156 180 0 6 779 260 62 0 0 chr11 25541118 25541150 -96302706 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 6 779 417 39 0 0 chr11 25542013 25542064 -96301792 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 6 779 357 24 0 0 chr11 25542459 25542501 -96301355 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 779 298 179 24 12 chr11 25544203 25544288 -96299568 + CT-rich Low_complexity Low_complexity 2 87 0 6 779 186 103 0 0 chr11 25546860 25546889 -96296967 + (T)n Simple_repeat Simple_repeat 1 29 0 6 779 203 105 26 26 chr11 25547298 25547337 -96296519 + (CATA)n Simple_repeat Simple_repeat 2 40 0 7 779 1061 104 11 17 chr11 25547375 25547551 -96296305 + L1_Mus3 LINE L1 6458 6632 -6 7 779 648 196 26 65 chr11 25548024 25548177 -96295679 + B1_Mur2 SINE Alu 2 148 -1 7 779 180 97 0 0 chr11 25548424 25548455 -96295401 + (T)n Simple_repeat Simple_repeat 1 31 0 7 779 260 111 22 0 chr11 25549738 25549783 -96294073 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 779 632 308 91 45 chr11 25550058 25550476 -96293380 + L3 LINE CR1 2470 2906 -1583 7 779 186 287 82 103 chr11 25551162 25551259 -96292597 - MIRb SINE MIR -24 244 150 7 779 243 214 91 101 chr11 25551377 25551476 -96292380 + RSINE1 SINE B4 68 165 0 7 779 616 252 14 7 chr11 25551666 25551806 -96292050 + B1F SINE Alu 9 149 0 7 779 576 77 0 0 chr11 25552109 25552187 -96291669 + (CCTG)n Simple_repeat Simple_repeat 2 79 0 7 779 294 183 0 0 chr11 25552213 25552284 -96291572 + CT-rich Low_complexity Low_complexity 2 72 0 8 779 350 301 104 21 chr11 25553229 25553470 -96290386 - L1MA7 LINE L1 -196 6095 5835 8 779 790 291 30 0 chr11 25553504 25553707 -96290149 - B3 SINE B2 -6 210 2 8 779 1074 287 44 21 chr11 25553719 25554639 -96289217 - L1MA7 LINE L1 -494 5818 4875 8 779 599 98 11 0 chr11 25556566 25556658 -96287198 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 8 779 240 315 22 0 chr11 25556816 25556905 -96286951 + GA-rich Low_complexity Low_complexity 4 94 0 8 779 239 0 32 0 chr11 25557633 25557664 -96286192 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 779 348 43 0 0 chr11 25558017 25558063 -96285793 + (T)n Simple_repeat Simple_repeat 1 46 0 8 779 27 29 0 0 chr11 25558365 25558399 -96285457 + AT_rich Low_complexity Low_complexity 1 34 0 8 779 550 228 8 24 chr11 25558663 25558789 -96285067 + RSINE1 SINE B4 5 128 -37 8 779 258 32 0 0 chr11 25558829 25558860 -96284996 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 780 900 111 74 0 chr11 25559148 25559283 -96284573 + B2_Mm2 SINE B2 1 145 -50 9 780 579 29 0 0 chr11 25559283 25559352 -96284504 + (TG)n Simple_repeat Simple_repeat 1 69 0 9 780 413 212 48 39 chr11 25562218 25562321 -96281535 + PB1D7 SINE Alu 5 108 -12 9 780 237 163 0 0 chr11 25562323 25562372 -96281484 + CT-rich Low_complexity Low_complexity 2 50 0 9 780 279 175 0 0 chr11 25562373 25562430 -96281426 + A-rich Low_complexity Low_complexity 1 57 0 9 780 3919 80 2 19 chr11 25562701 25563239 -96280617 - L1_Mus2 LINE L1 0 6566 6038 9 780 894 192 58 0 chr11 25563318 25563490 -96280366 + URR1A DNA MER1_type 45 226 0 9 780 297 0 0 0 chr11 25565387 25565420 -96278436 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 780 306 0 0 0 chr11 25565420 25565453 -96278403 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 780 503 277 31 0 chr11 25565474 25565609 -96278247 - B3A SINE B2 -67 149 1 9 780 249 222 0 0 chr11 25565991 25566054 -96277802 + C-rich Low_complexity Low_complexity 4 66 0 1 780 4050 69 4 7 chr11 25566713 25567252 -96276604 + L1Md_F2 LINE L1 6044 6580 -2 1 780 357 24 0 0 chr11 25568281 25568323 -96275533 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 780 573 199 0 0 chr11 25568460 25568626 -96275230 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 780 338 344 47 8 chr11 25568805 25568934 -96274922 + LTR88c LTR Genie? 4 137 -725 1 780 348 24 0 0 chr11 25569576 25569617 -96274239 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 780 21 0 0 0 chr11 25569876 25569897 -96273959 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 243 0 0 0 chr11 25570005 25570032 -96273824 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 780 363 328 79 82 chr11 25570552 25570844 -96273012 + L1MEc LINE L1 91 381 -6019 1 780 242 298 106 0 chr11 25570860 25571001 -96272855 + L1MEc LINE L1 428 583 -5817 1 780 252 86 0 0 chr11 25571239 25571274 -96272582 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 780 324 0 0 0 chr11 25571558 25571594 -96272262 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 780 402 167 0 0 chr11 25571594 25571678 -96272178 + GA-rich Low_complexity Low_complexity 2 85 0 1 780 621 288 48 31 chr11 25571770 25572251 -96271605 + L1MEc LINE L1 2849 3337 -2982 1 780 225 171 0 0 chr11 25573077 25573112 -96270744 - U2 snRNA snRNA -153 35 1 1 780 824 326 54 18 chr11 25573780 25574114 -96269742 + MLT1A1 LTR MaLR 63 408 0 1 780 1141 143 60 9 chr11 25575838 25576056 -96267800 - Lx LINE L1 -7 6647 6419 1 780 1301 252 100 9 chr11 25577642 25577982 -96265874 - ORR1C2 LTR MaLR -13 371 1 1 780 6342 93 9 2 chr11 25578101 25578991 -96264865 - L1_Mus4 LINE L1 0 6636 5741 1 780 531 0 0 0 chr11 25579047 25579106 -96264750 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 780 230 166 19 45 chr11 25580352 25580421 -96263435 - B1F SINE Alu -2 147 55 1 780 312 311 38 36 chr11 25580556 25580733 -96263123 - LTR16B2 LTR ERVL -8 455 283 1 780 753 43 0 0 chr11 25580748 25580841 -96263015 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 780 239 72 0 23 chr11 25587076 25587119 -96256737 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 780 219 146 0 0 chr11 25587119 25587160 -96256696 + (CCAA)n Simple_repeat Simple_repeat 3 43 0 1 780 3127 238 84 20 chr11 25587738 25588642 -96255214 - RCHARR1 DNA MER1_type 0 974 13 1 780 389 322 134 41 chr11 25589126 25589395 -96254461 - ORR1D2 LTR MaLR 0 370 77 1 780 197 377 19 9 chr11 25589537 25589644 -96254212 + MIRc SINE MIR 43 150 -118 1 780 733 309 18 22 chr11 25589980 25590205 -96253651 + B4A SINE B4 3 226 -66 1 780 532 306 22 0 chr11 25590208 25590342 -96253514 + RSINE1 SINE B4 3 139 -26 1 780 195 42 0 0 chr11 25590342 25590366 -96253490 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 780 434 75 15 0 chr11 25596128 25596195 -96247661 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 780 26 50 0 0 chr11 25597131 25597171 -96246685 + AT_rich Low_complexity Low_complexity 1 40 0 1 780 243 351 0 18 chr11 25597658 25597771 -96246085 + GA-rich Low_complexity Low_complexity 1 111 0 1 780 189 0 0 0 chr11 25598165 25598186 -96245670 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 780 423 0 0 0 chr11 25598188 25598235 -96245621 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 780 25 0 0 0 chr11 25598293 25598318 -96245538 + AT_rich Low_complexity Low_complexity 1 25 0 1 780 410 157 0 12 chr11 25602106 25602190 -96241666 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 780 180 0 0 0 chr11 25603286 25603306 -96240550 + (A)n Simple_repeat Simple_repeat 1 20 0 1 780 186 43 0 0 chr11 25605302 25605325 -96238531 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 780 372 88 0 0 chr11 25606170 25606227 -96237629 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 780 722 266 12 19 chr11 25606235 25606396 -96237460 - B3A SINE B2 -38 160 1 1 780 243 122 0 0 chr11 25607702 25607751 -96236105 + (T)n Simple_repeat Simple_repeat 1 49 0 1 780 429 20 0 0 chr11 25607970 25608020 -96235836 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 1 780 450 0 0 0 chr11 25608020 25608069 -96235787 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1 780 423 56 0 0 chr11 25608177 25608231 -96235625 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 780 385 378 76 5 chr11 25609492 25609715 -96234141 + MIR SINE MIR 22 260 -2 1 780 215 56 56 0 chr11 25610335 25610371 -96233485 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1 780 232 278 0 53 chr11 25610942 25611018 -96232838 - AmnSINE1 SINE SINE -4 571 500 1 780 752 331 79 7 chr11 25612531 25612835 -96231021 + Lx8 LINE L1 7009 7334 -139 1 780 206 333 43 0 chr11 25613257 25613326 -96230530 - MER91A DNA Tip100 0 196 125 1 780 393 275 64 45 chr11 25613326 25613426 -96230430 - MER91A DNA Tip100 -37 159 60 1 780 3443 30 0 0 chr11 25613426 25613822 -96230034 - MTA_Mm LTR MaLR 0 396 1 1 780 393 275 64 45 chr11 25613822 25613877 -96229979 - MER91A DNA Tip100 -137 59 1 1 780 1307 72 0 6 chr11 25614059 25614240 -96229616 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 780 189 0 0 0 chr11 25614240 25614261 -96229595 + (TCC)n Simple_repeat Simple_repeat 1 21 0 1 780 1284 89 0 0 chr11 25614261 25614441 -96229415 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 780 208 0 62 0 chr11 25614441 25614473 -96229383 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 780 306 0 0 0 chr11 25617267 25617301 -96226555 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 780 441 162 0 0 chr11 25617351 25617462 -96226394 + GA-rich Low_complexity Low_complexity 2 112 0 1 780 228 150 50 0 chr11 25617984 25618044 -96225812 + A-rich Low_complexity Low_complexity 2 64 0 1 780 261 262 36 0 chr11 25618197 25618281 -96225575 + L1MC1 LINE L1 6231 6317 -16 1 780 483 210 36 7 chr11 25619426 25619565 -96224291 + L1_Mus3 LINE L1 676 818 -5798 1 780 25231 139 12 10 chr11 25619652 25625491 -96218365 + L1_Mus3 LINE L1 827 6638 0 1 780 731 209 43 0 chr11 25625576 25625715 -96218141 - B1_Mur3 SINE Alu -1 148 4 1 780 1199 43 0 0 chr11 25626101 25626240 -96217616 + B1_Mus1 SINE Alu 5 143 -5 1 780 677 181 0 26 chr11 25626251 25626404 -96217452 + GA-rich Low_complexity Low_complexity 2 150 0 1 780 321 289 26 0 chr11 25627070 25627146 -96216710 + MER81 DNA AcHobo 30 107 -7 1 780 212 186 23 0 chr11 25627659 25627702 -96216154 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 780 25 51 0 0 chr11 25627908 25627947 -96215909 + AT_rich Low_complexity Low_complexity 1 39 0 1 780 198 0 0 0 chr11 25630343 25630365 -96213491 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1 780 195 157 0 0 chr11 25631223 25631274 -96212582 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 780 198 222 55 110 chr11 25631593 25631684 -96212172 - MIR3 SINE MIR -2 206 121 1 780 22 0 0 0 chr11 25632469 25632491 -96211365 + AT_rich Low_complexity Low_complexity 1 22 0 1 780 699 144 0 0 chr11 25633024 25633149 -96210707 + (TCCC)n Simple_repeat Simple_repeat 1 125 0 1 780 432 0 0 0 chr11 25634144 25634192 -96209664 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 780 206 357 49 21 chr11 25634779 25634922 -96208934 + L2a LINE L2 3279 3425 -1 1 780 288 170 0 0 chr11 25637017 25637070 -96206786 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 780 445 205 18 0 chr11 25638071 25638183 -96205673 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 780 464 310 52 17 chr11 25638590 25638764 -96205092 - MIR3 SINE MIR -6 202 23 1 780 186 344 11 32 chr11 25639633 25639726 -96204130 + MIRb SINE MIR 65 155 -113 1 780 187 302 51 78 chr11 25640103 25640314 -96203542 - MIR SINE MIR -40 228 33 1 780 621 136 0 0 chr11 25641188 25641291 -96202565 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 1 780 839 10 0 10 chr11 25641641 25641742 -96202114 + (TTCCC)n Simple_repeat Simple_repeat 2 101 0 1 780 585 281 62 117 chr11 25641801 25642108 -96201748 - B4 SINE B4 0 292 3 1 780 341 365 89 11 chr11 25642118 25642309 -96201547 + MER20 DNA MER1_type 10 215 -4 1 780 630 344 135 13 chr11 25642527 25642859 -96200997 + MLT1J2 LTR MaLR 3 375 -73 1 780 224 333 62 0 chr11 25643588 25643669 -96200187 + L2b LINE L2 3256 3390 -36 1 780 367 265 132 23 chr11 25643979 25644153 -96199703 + MER2 DNA MER2_type 57 249 -96 1 780 1570 239 27 43 chr11 25645470 25645841 -96198015 + ORR1D2 LTR MaLR 6 370 0 1 780 219 69 0 0 chr11 25647623 25647652 -96196204 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 1 780 383 263 91 25 chr11 25647957 25648078 -96195778 - MLT1A1 LTR MaLR -12 396 268 1 780 354 331 0 59 chr11 25648086 25648221 -96195635 - MLT1A1 LTR MaLR -230 144 18 1 780 309 362 14 28 chr11 25649782 25649927 -96193929 - MIR SINE MIR 0 262 120 1 780 546 16 0 0 chr11 25651651 25651714 -96192142 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 780 274 384 76 36 chr11 25652817 25653041 -96190815 - MIRc SINE MIR -33 235 3 1 780 399 202 26 0 chr11 25653792 25653906 -96189950 + GA-rich Low_complexity Low_complexity 2 118 0 1 780 283 226 63 45 chr11 25654410 25654521 -96189335 - L1MC LINE L1 -2417 3729 3617 1 780 27 0 0 0 chr11 25654965 25654992 -96188864 + AT_rich Low_complexity Low_complexity 1 27 0 1 780 1121 88 0 13 chr11 25654995 25655145 -96188711 + B1_Mus1 SINE Alu 1 148 0 1 780 522 0 0 0 chr11 25655146 25655204 -96188652 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 780 2154 80 42 55 chr11 25655421 25655708 -96188148 + ORR1A3 LTR MaLR 1 273 -53 1 780 659 124 0 24 chr11 25655708 25655832 -96188024 + Lx LINE L1 6534 6654 0 1 780 2154 80 42 55 chr11 25655832 25655874 -96187982 + ORR1A3 LTR MaLR 274 326 0 1 780 22 0 0 0 chr11 25656193 25656215 -96187641 + AT_rich Low_complexity Low_complexity 1 22 0 1 780 813 265 181 48 chr11 25656223 25656560 -96187296 + MTD LTR MaLR 18 399 -20 1 780 30020 95 8 5 chr11 25657097 25661673 -96182183 + L1_Mus1 LINE L1 217 4802 -1081 1 780 432 0 0 0 chr11 25661673 25661721 -96182135 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 780 30020 94 9 3 chr11 25661721 25663468 -96180388 + L1_Mus1 LINE L1 4803 6567 0 1 780 248 70 23 0 chr11 25663676 25663719 -96180137 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 2 780 1063 83 0 7 chr11 25663735 25663881 -96179975 - B1_Mus1 SINE Alu -2 146 2 2 780 219 329 53 33 chr11 25665589 25665772 -96178084 + MIRb SINE MIR 11 209 -59 2 780 989 53 45 22 chr11 25667268 25667402 -96176454 - B1_Mus1 SINE Alu -11 137 1 2 780 214 164 0 71 chr11 25668543 25668628 -96175228 + (TCTCTG)n Simple_repeat Simple_repeat 2 80 0 2 780 450 0 0 0 chr11 25668674 25668724 -96175132 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 780 408 208 0 0 chr11 25671998 25672094 -96171762 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 780 180 0 0 0 chr11 25672981 25673001 -96170855 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 780 25 51 0 0 chr11 25673340 25673379 -96170477 + AT_rich Low_complexity Low_complexity 1 39 0 2 780 2651 84 57 8 chr11 25673481 25673654 -96170202 + BGLII_Mus LTR ERVK 18 190 -232 2 780 618 51 0 0 chr11 25673654 25673732 -96170124 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 780 2651 84 57 8 chr11 25673732 25673944 -96169912 + BGLII_Mus LTR ERVK 191 422 0 2 780 5897 205 76 77 chr11 25674291 25676484 -96167372 + RMER3D-int LTR ERVK 652 2842 0 2 780 2791 92 52 2 chr11 25676484 25676886 -96166970 + BGLII_Mus LTR ERVK 1 422 0 2 780 188 331 171 27 chr11 25678729 25678875 -96164981 - MIRb SINE MIR -34 234 68 2 780 277 86 35 0 chr11 25680210 25680268 -96163588 + (TTTTTG)n Simple_repeat Simple_repeat 1 60 0 2 780 455 258 89 67 chr11 25681440 25681756 -96162100 - MER33 DNA MER1_type 0 324 2 2 780 202 293 71 91 chr11 25682133 25682314 -96161542 - MIR SINE MIR -57 205 12 2 780 21 0 0 0 chr11 25682807 25682828 -96161028 + AT_rich Low_complexity Low_complexity 1 21 0 2 780 197 277 206 10 chr11 25683280 25683382 -96160474 - MIR SINE MIR -25 237 116 2 780 909 258 172 0 chr11 25683847 25683952 -96159904 - Lx9 LINE L1 -15 7629 7515 2 780 478 54 0 26 chr11 25683952 25684028 -96159828 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 780 909 258 172 0 chr11 25684028 25684259 -96159597 - Lx9 LINE L1 -130 7514 7236 2 780 353 325 40 32 chr11 25684259 25684383 -96159473 - MLT1H2 LTR MaLR -306 183 59 2 780 192 214 71 0 chr11 25685020 25685076 -96158780 - L3 LINE CR1 -2289 2200 2141 2 780 216 122 0 0 chr11 25685145 25685186 -96158670 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 2 780 721 294 24 6 chr11 25685212 25685376 -96158480 + B3A SINE B2 2 168 -30 2 780 378 0 0 0 chr11 25685379 25685421 -96158435 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 780 970 56 0 0 chr11 25685758 25685883 -96157973 - L1_Mus2 LINE L1 -191 6375 6251 2 780 1431 92 0 84 chr11 25685883 25686120 -96157736 + L1_Mus2 LINE L1 6350 6566 0 2 780 566 292 116 17 chr11 25686229 25686410 -96157446 - B3 SINE B2 -1 215 17 2 780 402 240 126 74 chr11 25686511 25686646 -96157210 - B1_Mur2 SINE Alu -7 142 1 2 780 603 312 92 5 chr11 25686661 25686867 -96156989 + B4A SINE B4 67 290 -2 2 780 225 0 0 0 chr11 25686888 25686913 -96156943 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 780 309 155 0 0 chr11 25686947 25687005 -96156851 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 780 213 159 0 0 chr11 25687057 25687101 -96156755 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 780 180 176 0 0 chr11 25687136 25687170 -96156686 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 2 780 278 299 0 0 chr11 25687217 25687284 -96156572 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 780 306 0 0 0 chr11 25687335 25687369 -96156487 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 780 249 179 78 19 chr11 25689098 25689213 -96154643 - RMER17A LTR ERVK -288 463 354 2 780 499 298 85 45 chr11 25689252 25689452 -96154404 + MLT1J LTR MaLR 305 512 0 2 781 233 242 0 8 chr11 25692258 25692282 -96151574 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 781 360 0 0 0 chr11 25692282 25692322 -96151534 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 781 233 242 0 8 chr11 25692322 25692418 -96151438 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 781 386 62 0 0 chr11 25692418 25692466 -96151390 + HAL1-3A_ME LINE L1 1976 2023 -835 2 781 27 0 0 0 chr11 25693058 25693085 -96150771 + AT_rich Low_complexity Low_complexity 1 27 0 2 781 378 232 67 11 chr11 25694457 25694569 -96149287 - PB1D7 SINE Alu 0 127 6 2 781 315 333 9 0 chr11 25694489 25694594 -96149262 - ID_B1 SINE B4 -58 166 61 2 781 4362 14 4 0 chr11 25695344 25695835 -96148021 + MT2_Mm LTR ERVL 1 493 0 2 781 1197 199 37 31 chr11 25695840 25696162 -96147694 + L1_Mur3 LINE L1 5552 5875 -5 2 781 2001 44 0 0 chr11 25696162 25696413 -96147443 - MERVL-int LTR ERVL -680 4805 4555 2 781 43205 15 7 0 chr11 25696404 25701485 -96142371 + MERVL-int LTR ERVL 245 5360 -125 2 781 390 167 46 35 chr11 25701485 25701572 -96142284 + ORR1A3-int LTR MaLR 553 640 -1323 2 781 302 0 0 0 chr11 25701572 25701610 -96142246 + MERVL-int LTR ERVL 5448 5485 0 2 781 4387 12 4 0 chr11 25701610 25702101 -96141755 + MT2_Mm LTR ERVL 1 493 0 2 781 245 89 22 0 chr11 25702692 25702737 -96141119 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2 781 881 327 41 0 chr11 25703642 25703911 -96139945 - B4A SINE B4 -2 290 11 2 781 682 216 123 14 chr11 25703970 25704247 -96139609 + L1MA6 LINE L1 5575 5881 -419 2 781 288 70 0 0 chr11 25705188 25705231 -96138625 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 781 983 261 27 1 chr11 25705648 25705861 -96137995 - 7SLRNA srpRNA srpRNA -79 235 18 2 781 1169 317 40 22 chr11 25705863 25706369 -96137487 + Lx8 LINE L1 6780 7294 -179 2 781 28144 132 21 31 chr11 25706547 25709180 -96134676 + L1_Mus2 LINE L1 509 3131 -2752 2 781 281 47 0 23 chr11 25709180 25709224 -96134632 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 781 28144 101 20 8 chr11 25709224 25712624 -96131232 + L1_Mus2 LINE L1 3132 6566 0 2 781 27 49 0 0 chr11 25712714 25712755 -96131101 + AT_rich Low_complexity Low_complexity 1 41 0 2 781 1274 300 65 23 chr11 25713127 25713513 -96130343 - MTD LTR MaLR 0 419 18 2 781 21 57 0 0 chr11 25714312 25714347 -96129509 + AT_rich Low_complexity Low_complexity 1 35 0 2 781 260 36 51 51 chr11 25715976 25716035 -96127821 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 781 1198 68 0 0 chr11 25716044 25716191 -96127665 - B1_Mus1 SINE Alu 0 148 2 2 781 836 92 15 0 chr11 25718110 25718241 -96125615 + (TTTC)n Simple_repeat Simple_repeat 2 134 0 2 781 201 147 0 0 chr11 25718949 25718983 -96124873 + (CAT)n Simple_repeat Simple_repeat 2 35 0 2 781 1621 148 15 4 chr11 25719145 25719409 -96124447 + ORR1A3 LTR MaLR 1 267 -59 2 781 413 348 160 0 chr11 25720288 25720544 -96123312 - MER2 DNA MER2_type -23 322 26 2 781 319 324 20 0 chr11 25720682 25720784 -96123072 + MER5A DNA MER1_type 16 119 -70 2 781 232 239 141 0 chr11 25721887 25721958 -96121898 - L1MC4 LINE L1 -17 8025 7945 2 781 5874 87 8 4 chr11 25722333 25723854 -96120002 + MusHAL1 LINE L1 15 1544 -1809 2 781 1458 93 5 9 chr11 25723834 25724052 -96119804 - MusHAL1 LINE L1 -1600 1112 896 2 781 7142 72 30 1 chr11 25724045 25725092 -96118764 + MusHAL1 LINE L1 2273 3349 -4 2 781 867 81 39 32 chr11 25726310 25726464 -96117392 - L1_Mus3 LINE L1 -2 6636 6482 2 781 1129 240 86 77 chr11 25726767 25727106 -96116750 - ORR1E LTR MaLR -17 342 1 2 781 204 215 23 55 chr11 25727110 25727238 -96116618 + (TAA)n Simple_repeat Simple_repeat 3 126 0 2 781 304 200 15 15 chr11 25727241 25727307 -96116549 - B1F SINE Alu -51 98 33 2 781 27 0 0 0 chr11 25727529 25727556 -96116300 + AT_rich Low_complexity Low_complexity 1 27 0 2 781 272 231 25 13 chr11 25727649 25727728 -96116128 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 2 781 765 96 0 0 chr11 25728149 25728274 -96115582 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 2 781 243 0 0 0 chr11 25728363 25728390 -96115466 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2 781 604 252 59 154 chr11 25729183 25729455 -96114401 + B4A SINE B4 2 247 -45 2 781 22 0 0 0 chr11 25730016 25730038 -96113818 + AT_rich Low_complexity Low_complexity 1 22 0 2 781 315 0 0 0 chr11 25730581 25730616 -96113240 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 781 423 0 0 0 chr11 25730754 25730801 -96113055 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 781 409 182 54 0 chr11 25731578 25731726 -96112130 + CT-rich Low_complexity Low_complexity 1 156 0 2 781 222 288 68 96 chr11 25732643 25732789 -96111067 - MIRm SINE MIR -54 222 81 2 781 402 21 0 0 chr11 25734024 25734071 -96109785 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 781 485 167 16 65 chr11 25734570 25734756 -96109100 + GA-rich Low_complexity Low_complexity 3 179 0 2 781 220 341 34 11 chr11 25735856 25735945 -96107911 + MIR SINE MIR 54 144 -118 2 781 312 70 0 0 chr11 25735946 25735989 -96107867 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 781 206 105 0 26 chr11 25736569 25736608 -96107248 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 781 24 0 0 0 chr11 25739793 25739817 -96104039 + AT_rich Low_complexity Low_complexity 1 24 0 2 781 2221 114 35 0 chr11 25740970 25741286 -96102570 - ORR1A2 LTR MaLR 0 327 1 2 781 206 222 0 31 chr11 25741885 25741950 -96101906 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 2 781 308 333 0 75 chr11 25741993 25742113 -96101743 - Tigger10 DNA Tigger -53 1790 1680 2 781 264 306 18 26 chr11 25742122 25742236 -96101620 - Tigger10 DNA Tigger -1620 223 111 2 781 1868 207 135 18 chr11 25742947 25743353 -96100503 + RLTR20B3 LTR ERVK 21 471 -106 2 781 279 0 0 0 chr11 25743353 25743384 -96100472 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 781 1868 207 135 18 chr11 25743384 25743473 -96100383 + RLTR20B3 LTR ERVK 472 573 -4 2 781 257 263 123 0 chr11 25743589 25743646 -96100210 + BC1_Mm scRNA scRNA 8 71 -81 2 781 275 233 0 10 chr11 25744491 25744595 -96099261 + (CA)n Simple_repeat Simple_repeat 2 104 0 2 781 356 305 50 28 chr11 25744675 25744857 -96098999 - L1M5 LINE L1 -1466 4680 4495 2 781 345 348 0 26 chr11 25745547 25745662 -96098194 + PB1D10 SINE Alu 5 116 -1 2 781 22 0 0 0 chr11 25746005 25746027 -96097829 + AT_rich Low_complexity Low_complexity 1 22 0 2 781 274 374 23 39 chr11 25746924 25747052 -96096804 + MER20 DNA MER1_type 33 158 -61 2 781 358 313 211 16 chr11 25747538 25747730 -96096126 + B4 SINE B4 68 292 0 2 781 405 198 0 0 chr11 25747730 25747836 -96096020 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 781 232 348 0 0 chr11 25747845 25747914 -96095942 - ID4 SINE ID -12 71 3 3 781 459 52 0 0 chr11 25748087 25748145 -96095711 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 3 781 194 98 0 47 chr11 25748155 25748198 -96095658 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 781 1195 25 31 19 chr11 25748239 25748399 -96095457 - L1Md_F3 LINE L1 0 6584 6423 3 781 259 286 12 12 chr11 25748596 25748681 -96095175 - HAL1b LINE L1 -884 1125 1041 3 781 195 129 0 0 chr11 25748689 25748720 -96095136 + (T)n Simple_repeat Simple_repeat 1 31 0 3 781 766 297 94 55 chr11 25749871 25750476 -96093380 - Lx8 LINE L1 -18 7455 6827 3 781 537 286 116 12 chr11 25750472 25750645 -96093211 + Lx8 LINE L1 6585 6775 -698 3 781 272 293 13 0 chr11 25750703 25750778 -96093078 - ID2 SINE ID -3 80 5 3 781 30 27 0 0 chr11 25751547 25751584 -96092272 + AT_rich Low_complexity Low_complexity 1 37 0 3 781 24 53 0 0 chr11 25752784 25752822 -96091034 + AT_rich Low_complexity Low_complexity 1 38 0 3 781 190 231 26 0 chr11 25753701 25753740 -96090116 + L4 LINE RTE 1984 2023 -6 3 781 23 33 0 0 chr11 25756296 25756326 -96087530 + AT_rich Low_complexity Low_complexity 1 30 0 3 781 354 123 0 0 chr11 25757218 25757275 -96086581 + (TTG)n Simple_repeat Simple_repeat 3 59 0 3 781 22 0 0 0 chr11 25757648 25757670 -96086186 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 222 128 0 0 chr11 25759424 25759463 -96084393 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 781 427 33 16 16 chr11 25760770 25760832 -96083024 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 781 284 200 14 0 chr11 25760968 25761038 -96082818 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 781 200 167 21 0 chr11 25763903 25763951 -96079905 + GA-rich Low_complexity Low_complexity 2 50 0 3 781 205 81 81 0 chr11 25765057 25765094 -96078762 + A-rich Low_complexity Low_complexity 2 41 0 3 781 448 306 45 39 chr11 25765521 25765806 -96078050 + HAL1-2a_MD LINE L1 2342 2518 -506 3 781 634 301 68 23 chr11 25765881 25766058 -96077798 - MER5A DNA MER1_type -3 186 2 3 781 345 333 58 0 chr11 25766667 25766787 -96077069 + B1F SINE Alu 13 139 -10 3 781 243 0 0 0 chr11 25766829 25766856 -96077000 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 781 1023 56 113 0 chr11 25768935 25769077 -96074779 + RMER17A LTR ERVK 1 158 -593 3 781 405 324 21 21 chr11 25769078 25769220 -96074636 - MIR SINE MIR -119 143 2 3 781 624 27 0 0 chr11 25769230 25769304 -96074552 + (GAGAA)n Simple_repeat Simple_repeat 5 78 0 3 781 1294 61 0 16 chr11 25769322 25769505 -96074351 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 781 702 0 0 0 chr11 25769506 25769584 -96074272 + (GGAAA)n Simple_repeat Simple_repeat 1 78 0 3 781 366 23 0 0 chr11 25769732 25769775 -96074081 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 781 501 47 0 0 chr11 25769775 25769838 -96074018 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 781 212 0 36 0 chr11 25771009 25771037 -96072819 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 781 225 246 0 32 chr11 25772265 25772328 -96071528 + A-rich Low_complexity Low_complexity 3 63 0 3 781 27 81 0 0 chr11 25773014 25773076 -96070780 + AT_rich Low_complexity Low_complexity 1 62 0 3 781 27 29 0 0 chr11 25773321 25773355 -96070501 + AT_rich Low_complexity Low_complexity 1 34 0 3 781 238 157 129 24 chr11 25773814 25773899 -96069957 + Lx5 LINE L1 6955 7048 -2 3 781 369 0 0 0 chr11 25773909 25773950 -96069906 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 781 198 0 0 0 chr11 25773950 25773971 -96069885 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 781 225 0 0 0 chr11 25774060 25774085 -96069771 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 781 466 271 63 39 chr11 25774093 25774300 -96069556 - MER33 DNA MER1_type -103 221 10 3 781 231 36 0 0 chr11 25775629 25775657 -96068199 + (A)n Simple_repeat Simple_repeat 1 28 0 3 781 4518 36 0 0 chr11 25775922 25776452 -96067404 - L1Md_T LINE L1 0 6582 6053 3 781 4008 16 6 0 chr11 25776452 25777089 -96066767 + L1Md_A LINE L1 5404 6043 -539 3 781 509 125 11 0 chr11 25778281 25778369 -96065487 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 3 781 1210 34 0 20 chr11 25778753 25778903 -96064953 + B1_Mus1 SINE Alu 2 148 0 3 781 225 0 0 0 chr11 25778903 25778928 -96064928 + (A)n Simple_repeat Simple_repeat 1 25 0 3 781 262 209 67 142 chr11 25780876 25781010 -96062846 + ORR1D1 LTR MaLR 247 370 -4 3 781 626 285 39 6 chr11 25781449 25781629 -96062227 + MLT1E3 LTR MaLR 3 188 -436 3 781 243 323 125 0 chr11 25781660 25781756 -96062100 + PB1D7 SINE Alu 1 108 -12 3 781 337 295 133 28 chr11 25782083 25782226 -96061630 + RSINE1 SINE B4 2 159 -6 3 781 456 67 0 0 chr11 25783261 25783321 -96060535 + (TTA)n Simple_repeat Simple_repeat 3 62 0 3 781 180 152 0 0 chr11 25783804 25783837 -96060019 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 781 207 0 0 0 chr11 25785151 25785174 -96058682 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 781 374 343 77 58 chr11 25785636 25785896 -96057960 + B4 SINE B4 1 265 -27 3 781 363 44 0 0 chr11 25785896 25785941 -96057915 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 781 333 0 0 0 chr11 25785941 25785977 -96057879 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 781 180 200 0 0 chr11 25786391 25786436 -96057420 + GA-rich Low_complexity Low_complexity 4 48 0 3 781 3768 106 41 2 chr11 25788506 25789113 -96054743 - L1_Mur1 LINE L1 -2890 2996 2366 3 781 8145 119 19 11 chr11 25789107 25791101 -96052755 + Lx3B LINE L1 4961 6971 -2 3 781 263 279 73 31 chr11 25791316 25791386 -96052470 - B1_Mur4 SINE Alu -33 117 45 3 781 180 111 0 0 chr11 25791386 25791413 -96052443 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 3 781 263 279 73 31 chr11 25791413 25791438 -96052418 - B1_Mur4 SINE Alu -106 44 19 3 781 2898 26 11 0 chr11 25793633 25793980 -96049876 + L1Md_F3 LINE L1 6233 6583 -1 3 781 271 299 61 38 chr11 25794220 25794352 -96049504 + MIRb SINE MIR 87 221 -47 3 781 275 71 24 0 chr11 25794367 25794409 -96049447 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 3 781 2401 63 9 3 chr11 25794411 25794727 -96049129 - L1_Mus1 LINE L1 0 6567 6250 3 781 377 319 103 27 chr11 25795762 25795946 -96047910 + B3A SINE B2 1 198 0 3 781 26 64 0 0 chr11 25796199 25796246 -96047610 + AT_rich Low_complexity Low_complexity 1 47 0 3 781 316 315 72 12 chr11 25796478 25796645 -96047211 + Tigger13a DNA MER2_type 407 583 -188 3 781 689 274 14 0 chr11 25797006 25797152 -96046704 + B1_Mus1 SINE Alu 1 148 0 3 781 476 106 43 0 chr11 25797172 25797266 -96046590 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 3 781 271 200 36 0 chr11 25797332 25797387 -96046469 + B1_Mus2 SINE Alu 68 124 -23 3 781 465 71 0 0 chr11 25797398 25797468 -96046388 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 781 471 107 0 0 chr11 25797468 25797552 -96046304 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 781 4957 79 25 3 chr11 25797622 25798304 -96045552 - Lx3_Mus LINE L1 -8 7001 6305 3 781 476 234 108 0 chr11 25798346 25798457 -96045399 + ORR1D1 LTR MaLR 1 123 -251 3 781 4423 116 1 35 chr11 25798465 25799155 -96044701 - Lx LINE L1 -7 6647 5981 3 781 697 291 26 26 chr11 25799189 25799422 -96044434 - MLT1A0 LTR MaLR -121 244 12 3 781 28 61 0 0 chr11 25799426 25799475 -96044381 + AT_rich Low_complexity Low_complexity 1 49 0 3 781 210 91 0 0 chr11 25799486 25799519 -96044337 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 781 338 61 20 0 chr11 25799540 25799589 -96044267 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 781 360 111 0 0 chr11 25799974 25800028 -96043828 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 3 781 448 293 10 0 chr11 25800305 25800404 -96043452 - B1_Mur2 SINE Alu -48 101 2 3 781 22 56 0 0 chr11 25801236 25801272 -96042584 + AT_rich Low_complexity Low_complexity 1 36 0 3 781 338 22 0 42 chr11 25804004 25804052 -96039804 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 781 21 0 0 0 chr11 25804538 25804559 -96039297 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 34 55 0 0 chr11 25805363 25805418 -96038438 + AT_rich Low_complexity Low_complexity 1 55 0 3 781 297 51 0 0 chr11 25805796 25805835 -96038021 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 3 781 243 0 0 0 chr11 25806579 25806606 -96037250 + (A)n Simple_repeat Simple_repeat 1 27 0 3 781 298 326 10 50 chr11 25808247 25808347 -96035509 + RSINE1 SINE B4 26 121 -44 3 781 521 15 15 0 chr11 25808357 25808423 -96035433 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3 781 361 317 24 8 chr11 25809373 25809497 -96034359 + ID_B1 SINE B4 91 216 -8 3 781 2177 192 30 9 chr11 25809940 25810472 -96033384 - L1_Mur2 LINE L1 -2496 3381 2839 3 781 4740 226 50 28 chr11 25810473 25811881 -96031975 + Lx5 LINE L1 5036 6452 -598 3 781 276 100 0 0 chr11 25811881 25811921 -96031935 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 3 781 4740 253 50 63 chr11 25811921 25812488 -96031368 + Lx5 LINE L1 6453 7032 -18 3 781 399 205 8 11 chr11 25813087 25813210 -96030646 + L1VL2 LINE L1 2 82 -6340 3 781 24735 159 14 28 chr11 25813308 25814074 -96029782 + L1Md_F LINE L1 668 1446 -4437 3 781 3182 97 11 0 chr11 25814074 25814517 -96029339 + RLTR44B LTR ERVK 2 449 0 3 781 24735 113 25 72 chr11 25814517 25814926 -96028930 + L1Md_F LINE L1 1447 1838 -4045 3 781 2446 89 12 3 chr11 25814926 25815265 -96028591 + L1_Mus1 LINE L1 6224 6565 -2 3 781 24735 113 25 72 chr11 25815265 25815279 -96028577 + L1Md_F LINE L1 1839 1839 -4044 3 781 315 0 0 0 chr11 25815279 25815314 -96028542 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 781 24735 113 25 72 chr11 25815314 25819043 -96024813 + L1Md_F LINE L1 1839 5357 -526 3 781 1067 85 0 7 chr11 25819043 25819185 -96024671 - B1_Mus1 SINE Alu -7 141 1 3 781 24735 113 25 72 chr11 25819185 25819679 -96024177 + L1Md_F LINE L1 5358 5855 -28 3 781 631 263 59 7 chr11 25819683 25819836 -96024020 + B3 SINE B2 2 162 -54 4 97 4253 124 59 4 chr11 25820642 25822006 -96021850 + L1VL2 LINE L1 179 1631 -2067 3 782 6395 91 3 5 chr11 25821999 25822930 -96020926 + L1_Mus3 LINE L1 5706 6634 -4 4 782 21 36 0 0 chr11 25822996 25823024 -96020832 + AT_rich Low_complexity Low_complexity 1 28 0 4 782 21 57 0 0 chr11 25823767 25823802 -96020054 + AT_rich Low_complexity Low_complexity 1 35 0 4 782 534 71 398 0 chr11 25824031 25824144 -96019712 - Lx2 LINE L1 -11 6986 6829 4 782 491 126 9 28 chr11 25824147 25824253 -96019603 - Lx2 LINE L1 -748 6249 6146 4 782 3075 99 30 6 chr11 25824250 25824725 -96019131 + Lx2 LINE L1 5651 6136 -861 4 782 553 103 9 18 chr11 25828530 25828639 -96015217 + (TCTCTG)n Simple_repeat Simple_repeat 1 108 0 4 782 857 329 43 45 chr11 25828806 25829182 -96014674 + MTD LTR MaLR 1 375 -44 4 782 534 230 85 43 chr11 25829402 25829543 -96014313 - B1_Mur1 SINE Alu 0 149 3 4 782 624 222 21 49 chr11 25829731 25829873 -96013983 - B1_Mus1 SINE Alu 0 148 11 4 782 252 188 0 0 chr11 25829977 25830041 -96013815 + (TGAA)n Simple_repeat Simple_repeat 4 67 0 4 782 1510 99 13 4 chr11 25830067 25830299 -96013557 + L1_Mus3 LINE L1 6405 6638 0 4 782 6031 151 31 33 chr11 25830517 25831943 -96011913 - L1_Mus2 LINE L1 0 6997 5588 4 782 13442 124 24 23 chr11 25831942 25834781 -96009075 - L1VL4 LINE L1 -480 3337 512 4 782 363 136 0 0 chr11 25834783 25834842 -96009014 + (TTC)n Simple_repeat Simple_repeat 3 61 0 4 782 3458 68 35 23 chr11 25834900 25835383 -96008473 - L1_Mus2 LINE L1 0 6566 6078 4 782 986 285 107 0 chr11 25835694 25835975 -96007881 + MLT1G3 LTR MaLR 285 595 0 4 782 216 0 0 0 chr11 25836611 25836635 -96007221 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 4 782 531 82 0 0 chr11 25837040 25837113 -96006743 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 782 213 275 0 14 chr11 25840057 25840127 -96003729 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 782 333 47 0 0 chr11 25840127 25840170 -96003686 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 782 191 128 0 49 chr11 25845085 25845126 -95998730 + (CATA)n Simple_repeat Simple_repeat 2 40 0 4 782 227 336 24 8 chr11 25845284 25845410 -95998446 + L1MC5 LINE L1 7787 7914 -47 4 782 963 289 39 110 chr11 25845559 25845912 -95997944 + L1MA5A LINE L1 5083 5486 -811 4 782 479 242 102 5 chr11 25845912 25846099 -95997757 + B3 SINE B2 2 206 -10 4 782 963 291 57 95 chr11 25846099 25846573 -95997283 + L1MA5A LINE L1 5487 5932 -365 4 782 426 121 0 0 chr11 25846611 25846677 -95997179 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 782 588 314 38 0 chr11 25846888 25847047 -95996809 + RSINE1 SINE B4 1 165 0 4 782 30 54 0 39 chr11 25847125 25847202 -95996654 + AT_rich Low_complexity Low_complexity 1 74 0 4 782 1593 231 108 39 chr11 25848525 25848917 -95994939 + Lx9 LINE L1 6783 7212 -432 4 782 6638 129 28 9 chr11 25848917 25850022 -95993834 - Lx2 LINE L1 0 6997 5872 4 782 1593 231 108 39 chr11 25850022 25850139 -95993717 + Lx9 LINE L1 7213 7327 -317 4 782 961 269 32 22 chr11 25851990 25852267 -95991589 - Lx7 LINE L1 -1273 6423 6144 4 782 596 308 0 7 chr11 25852394 25852541 -95991315 + RSINE1 SINE B4 12 157 -8 4 782 303 260 59 10 chr11 25852978 25853079 -95990777 + L1_Rod LINE L1 743 848 -6760 4 782 1165 221 56 11 chr11 25853109 25853560 -95990296 + L1_Rod LINE L1 997 1472 -4375 4 782 1531 224 42 29 chr11 25853583 25854065 -95989791 + L1_Rod LINE L1 1718 2205 -3642 4 782 3935 191 94 16 chr11 25854107 25854988 -95988868 + RMER19B LTR ERVK 1 890 -12 4 782 2135 254 36 35 chr11 25855000 25855805 -95988051 + L1_Rod LINE L1 2954 3759 -2088 4 782 3201 213 52 50 chr11 25855821 25856146 -95987710 + L1_Rod LINE L1 4894 5205 -642 4 782 261 0 0 0 chr11 25856146 25856175 -95987681 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 782 3201 213 52 50 chr11 25856175 25856799 -95987057 + L1_Rod LINE L1 5206 5845 -2 4 782 1780 231 55 32 chr11 25856803 25857202 -95986654 + Lx9 LINE L1 6970 7379 -265 4 782 210 37 0 0 chr11 25857202 25857229 -95986627 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 782 1780 231 55 32 chr11 25857229 25857335 -95986521 + Lx9 LINE L1 7380 7486 -158 4 782 354 107 0 0 chr11 25857874 25857930 -95985926 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 782 267 193 105 0 chr11 25858333 25858390 -95985466 - B1_Mus2 SINE Alu -16 131 69 4 782 502 237 108 60 chr11 25858427 25858593 -95985263 + MTEb LTR MaLR 53 226 -153 4 782 362 314 96 31 chr11 25858988 25859248 -95984608 + L1M5 LINE L1 5397 5673 -451 4 782 653 295 100 100 chr11 25859536 25859660 -95984196 + MLT2C2 LTR ERVL 11 128 -336 4 782 1118 68 7 0 chr11 25859660 25859806 -95984050 + B1_Mus2 SINE Alu 1 147 0 4 782 653 295 100 100 chr11 25859806 25860061 -95983795 + MLT2C2 LTR ERVL 129 390 -74 4 782 531 0 0 0 chr11 25861267 25861326 -95982530 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 782 223 292 31 0 chr11 25861608 25861673 -95982183 + BC1_Mm scRNA scRNA 11 77 -75 4 782 216 0 0 0 chr11 25862085 25862109 -95981747 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 782 247 78 39 0 chr11 25862461 25862512 -95981344 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 4 782 326 132 0 13 chr11 25862544 25862621 -95981235 + (CAAAAA)n Simple_repeat Simple_repeat 3 78 0 4 782 1084 70 0 0 chr11 25862781 25862923 -95980933 - B1_Mm SINE Alu -1 146 5 4 782 25 51 0 0 chr11 25862926 25862965 -95980891 + AT_rich Low_complexity Low_complexity 1 39 0 4 782 218 125 25 0 chr11 25863275 25863315 -95980541 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 782 381 276 0 17 chr11 25863349 25863379 -95980477 - BC1_Mm scRNA scRNA -31 121 93 4 782 1124 82 0 13 chr11 25863379 25863528 -95980328 - B1_Mus1 SINE Alu 0 148 2 4 782 386 265 0 2 chr11 25863528 25863615 -95980241 - ID4 SINE ID -60 92 6 4 782 21 0 0 0 chr11 25864213 25864234 -95979622 + AT_rich Low_complexity Low_complexity 1 21 0 4 782 287 326 128 8 chr11 25864398 25864531 -95979325 + RSINE1 SINE B4 17 165 0 4 782 4396 121 40 26 chr11 25864643 25865119 -95978737 + L1VL4 LINE L1 225 727 -5575 4 782 2426 60 6 29 chr11 25865119 25865460 -95978396 + L1_Mus2 LINE L1 6234 6566 0 4 782 18109 83 13 21 chr11 25865460 25868333 -95975523 + L1VL4 LINE L1 728 3559 0 4 782 27 0 0 0 chr11 25868402 25868429 -95975427 + AT_rich Low_complexity Low_complexity 1 27 0 4 782 1878 197 19 24 chr11 25868683 25869052 -95974804 + ORR1D1 LTR MaLR 7 373 -1 4 782 300 278 22 11 chr11 25869128 25869219 -95974637 + L1M4 LINE L1 2401 2492 -3654 4 782 496 334 116 39 chr11 25869200 25869614 -95974242 + L1M4 LINE L1 3672 4117 -2029 4 782 612 101 0 0 chr11 25869744 25869833 -95974023 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 782 1140 82 0 0 chr11 25869965 25870111 -95973745 + B1_Mus1 SINE Alu 2 147 -1 4 782 244 44 67 0 chr11 25870112 25870157 -95973699 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 782 35415 44 0 3 chr11 25870275 25875498 -95968358 + L1Md_T LINE L1 287 5589 -297 4 782 8460 32 0 0 chr11 25875498 25876494 -95967362 + L1Md_T LINE L1 5590 6585 0 4 782 243 325 75 6 chr11 25876999 25877160 -95966696 - MIR SINE MIR -58 204 33 4 782 286 335 130 38 chr11 25877521 25877813 -95966043 - L2 LINE L2 -534 2885 2567 4 782 285 29 0 0 chr11 25878634 25878668 -95965188 + (TTG)n Simple_repeat Simple_repeat 2 35 0 4 782 203 189 0 0 chr11 25881075 25881112 -95962744 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 782 636 81 0 0 chr11 25881965 25882052 -95961804 + (TTTTC)n Simple_repeat Simple_repeat 3 89 0 4 782 371 308 84 26 chr11 25882842 25883032 -95960824 - MIRb SINE MIR 0 268 68 4 782 226 89 0 62 chr11 25883098 25883146 -95960710 + A-rich Low_complexity Low_complexity 2 46 0 4 782 272 353 60 7 chr11 25883513 25883664 -95960192 + MLT1B LTR MaLR 215 373 -17 4 782 405 39 0 0 chr11 25885719 25885770 -95958086 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 782 273 146 0 0 chr11 25887396 25887444 -95956412 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 782 21 71 0 0 chr11 25888172 25888214 -95955642 + AT_rich Low_complexity Low_complexity 1 42 0 4 782 522 338 112 58 chr11 25889864 25890140 -95953716 - B4A SINE B4 0 292 2 4 782 186 103 0 0 chr11 25890367 25890396 -95953460 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 782 872 67 8 0 chr11 25890396 25890515 -95953341 + (GA)n Simple_repeat Simple_repeat 1 121 0 4 782 1109 38 25 6 chr11 25891266 25891425 -95952431 + L1_Mus3 LINE L1 6473 6634 -4 4 782 378 0 0 0 chr11 25891461 25891503 -95952353 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 782 28 29 0 0 chr11 25892156 25892191 -95951665 + AT_rich Low_complexity Low_complexity 1 35 0 4 782 414 0 0 0 chr11 25892835 25892881 -95950975 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 782 321 186 0 0 chr11 25893132 25893202 -95950654 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 782 22 0 0 0 chr11 25893294 25893316 -95950540 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 614 246 35 18 chr11 25894186 25894356 -95949500 - MER5B DNA MER1_type -5 173 1 4 782 22 0 0 0 chr11 25894726 25894748 -95949108 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 1179 29 7 0 chr11 25896171 25896311 -95947545 - B1_Mus2 SINE Alu -5 142 2 4 782 23 33 0 0 chr11 25896727 25896757 -95947099 + AT_rich Low_complexity Low_complexity 1 30 0 4 782 866 87 40 0 chr11 25897151 25897324 -95946532 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 782 229 85 85 0 chr11 25898177 25898224 -95945632 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 782 281 357 17 25 chr11 25898578 25898696 -95945160 - MER5B DNA MER1_type 0 178 62 4 782 22 0 0 0 chr11 25898897 25898919 -95944937 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 22 80 0 0 chr11 25900253 25900303 -95943553 + AT_rich Low_complexity Low_complexity 1 50 0 4 782 375 265 0 0 chr11 25902783 25902866 -95940990 + ID4 SINE ID 1 83 0 4 782 1330 207 69 19 chr11 25903002 25903322 -95940534 + MER46C DNA MER2_type 3 338 0 4 782 306 0 0 0 chr11 25903540 25903574 -95940282 + (TCCTG)n Simple_repeat Simple_repeat 2 35 0 4 782 456 156 0 0 chr11 25908135 25908225 -95935631 + GA-rich Low_complexity Low_complexity 1 90 0 4 782 1554 14 0 0 chr11 25908225 25908441 -95935415 + (GGGAGA)n Simple_repeat Simple_repeat 1 216 0 4 782 342 0 0 0 chr11 25909708 25909746 -95934110 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 782 373 194 6 24 chr11 25910539 25910703 -95933153 + (CA)n Simple_repeat Simple_repeat 2 162 0 4 782 1188 64 0 0 chr11 25911128 25911299 -95932557 + (CA)n Simple_repeat Simple_repeat 1 171 0 4 782 2862 259 51 96 chr11 25912242 25913261 -95930595 + RCHARR1 DNA MER1_type 1 973 -1 4 782 896 279 108 19 chr11 25913474 25913788 -95930068 - ORR1E LTR MaLR -17 342 1 5 782 23 33 0 0 chr11 25915490 25915520 -95928336 + AT_rich Low_complexity Low_complexity 1 30 0 5 782 7214 124 96 4 chr11 25915738 25917029 -95926827 + Lx2 LINE L1 5587 6996 -1 5 782 3474 101 10 2 chr11 25917558 25918063 -95925793 + L1_Mus3 LINE L1 6128 6636 -2 5 782 429 20 0 0 chr11 25918071 25918121 -95925735 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 782 266 247 0 27 chr11 25918143 25918218 -95925638 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 5 782 227 182 0 13 chr11 25918225 25918303 -95925553 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 782 805 337 7 38 chr11 25918340 25918633 -95925223 - B4A SINE B4 -8 284 1 5 782 881 183 194 0 chr11 25920039 25920219 -95923637 - B3 SINE B2 -1 215 1 5 782 249 359 94 55 chr11 25920226 25920501 -95923355 + L3 LINE CR1 3546 3828 -661 5 782 1759 169 108 19 chr11 25920501 25920863 -95922993 + ORR1B1 LTR MaLR 1 394 0 5 782 249 359 94 55 chr11 25920863 25921185 -95922671 + L3 LINE CR1 3829 4166 -323 5 782 961 286 46 24 chr11 25921287 25921720 -95922136 - Charlie1b DNA MER1_type -33 490 1 5 782 217 316 75 50 chr11 25921726 25921846 -95922010 + L3 LINE CR1 4279 4401 -88 5 782 213 280 0 0 chr11 25922238 25922288 -95921568 - L3 LINE CR1 -293 4196 4147 5 782 331 316 48 95 chr11 25923467 25923635 -95920221 - L1ME2 LINE L1 -17 6147 5988 5 782 1283 80 23 0 chr11 25923664 25923839 -95920017 - B2_Mm1a SINE B2 -14 179 1 5 782 300 286 124 29 chr11 25923882 25924156 -95919700 - L1ME2 LINE L1 -285 5879 5580 5 782 309 281 52 0 chr11 25924632 25924728 -95919128 - MIRc SINE MIR -125 143 43 5 782 256 232 0 51 chr11 25924819 25924878 -95918978 + tRNA-Ala-GCY_ tRNA tRNA 19 74 -1 5 782 384 103 0 0 chr11 25926237 25926295 -95917561 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 782 723 236 7 39 chr11 25926521 25926675 -95917181 - B1F2 SINE Alu 0 149 1 5 782 207 69 0 0 chr11 25926922 25926951 -95916905 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 782 2690 73 124 12 chr11 25927816 25928243 -95915613 + IAPLTR2_Mm LTR ERVK 1 475 0 5 782 261 0 0 0 chr11 25928561 25928590 -95915266 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 782 888 266 10 20 chr11 25929242 25929445 -95914411 - B3 SINE B2 -11 205 5 5 782 561 291 9 90 chr11 25929481 25929704 -95914152 + B3 SINE B2 2 206 -10 5 782 526 221 19 0 chr11 25929937 25930041 -95913815 - PB1D10 SINE Alu -11 106 1 5 782 1302 87 144 21 chr11 25930041 25930277 -95913579 - L1Md_F2 LINE L1 -8 6574 6310 5 782 4430 12 2 0 chr11 25930277 25930769 -95913087 - MT2_Mm LTR ERVL 0 493 1 5 782 302 0 0 0 chr11 25930769 25930807 -95913049 - MERVL-int LTR ERVL 0 5485 5448 5 782 390 167 46 35 chr11 25930807 25930894 -95912962 - ORR1A3-int LTR MaLR -1323 640 553 5 782 11329 26 1 0 chr11 25930894 25932254 -95911602 - MERVL-int LTR ERVL -125 5360 4000 5 782 8465 11 33 0 chr11 25932246 25933257 -95910599 - MERVL-int LTR ERVL -4441 1044 1 5 782 4430 12 2 0 chr11 25933257 25933749 -95910107 - MT2_Mm LTR ERVL 0 493 1 5 782 1669 59 5 1 chr11 25933749 25933999 -95909857 - L1Md_F2 LINE L1 -268 6314 6065 5 782 392 128 0 13 chr11 25934012 25934091 -95909765 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 782 6060 131 22 35 chr11 25936090 25936223 -95907633 + Lx LINE L1 5552 5680 -203 5 782 3171 45 12 5 chr11 25936223 25936625 -95907231 - L1Md_F2 LINE L1 -1 6581 6177 5 782 6060 128 30 33 chr11 25936625 25937597 -95906259 + Lx LINE L1 5681 6654 0 5 782 432 37 0 0 chr11 25937597 25937651 -95906205 + (TAAAA)n Simple_repeat Simple_repeat 5 58 0 5 782 1275 89 0 0 chr11 25938554 25938733 -95905123 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 782 550 143 9 9 chr11 25938734 25938840 -95905016 + CT-rich Low_complexity Low_complexity 1 106 0 5 782 585 246 21 14 chr11 25939149 25939289 -95904567 - B1F SINE Alu 0 149 9 5 782 186 205 26 0 chr11 25939709 25939748 -95904108 + MIR3 SINE MIR 168 207 -1 5 782 209 33 33 0 chr11 25941231 25941261 -95902595 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 782 267 31 0 0 chr11 25941261 25941293 -95902563 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 782 222 218 0 0 chr11 25941642 25941697 -95902159 + T-rich Low_complexity Low_complexity 1 55 0 5 782 22 56 0 0 chr11 25942208 25942244 -95901612 + AT_rich Low_complexity Low_complexity 1 36 0 5 782 279 0 0 0 chr11 25942359 25942390 -95901466 + (GCTG)n Simple_repeat Simple_repeat 2 32 0 5 782 989 163 0 0 chr11 25942711 25942883 -95900973 + Lx4A LINE L1 6112 6283 -775 5 782 192 158 57 44 chr11 25944171 25944330 -95899526 + (TAGA)n Simple_repeat Simple_repeat 1 161 0 5 782 254 179 0 18 chr11 25944376 25944433 -95899423 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 5 782 617 83 330 0 chr11 25944488 25944597 -95899259 - B2_Mm2 SINE B2 -49 146 2 5 782 29 0 0 0 chr11 25944656 25944685 -95899171 + AT_rich Low_complexity Low_complexity 1 29 0 5 782 192 77 0 0 chr11 25944792 25944818 -95899038 + (GGA)n Simple_repeat Simple_repeat 2 27 0 5 782 261 0 0 0 chr11 25944842 25944871 -95898985 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 782 23 0 0 0 chr11 25944977 25945000 -95898856 + AT_rich Low_complexity Low_complexity 1 23 0 5 782 287 352 29 0 chr11 25945016 25945121 -95898735 - PB1D10 SINE Alu -3 114 7 5 782 438 20 0 0 chr11 25945503 25945554 -95898302 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 782 198 0 0 0 chr11 25946061 25946083 -95897773 + (T)n Simple_repeat Simple_repeat 1 22 0 5 782 1902 91 0 0 chr11 25947633 25947887 -95895969 - L1_Mus2 LINE L1 0 6566 6313 5 782 6770 139 14 1 chr11 25947895 25949068 -95894788 - L1_Mus4 LINE L1 -685 5198 4010 5 782 6644 108 18 6 chr11 25949066 25950487 -95893369 + L1_Mus4 LINE L1 5199 6636 0 5 782 289 58 39 0 chr11 25950816 25950868 -95892988 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 782 399 289 69 14 chr11 25951496 25951640 -95892216 + B3A SINE B2 5 156 -42 5 97 1659 174 106 24 chr11 25952185 25952526 -95891330 + ORR1C1 LTR MaLR 6 374 -4 5 783 228 216 0 0 chr11 25953286 25953337 -95890519 + (CAAG)n Simple_repeat Simple_repeat 2 52 0 5 783 186 133 0 0 chr11 25953350 25953380 -95890476 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 5 783 495 0 0 0 chr11 25955847 25955902 -95887954 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 783 925 285 136 34 chr11 25957156 25957538 -95886318 - MTD LTR MaLR 0 421 1 5 783 1495 229 60 5 chr11 25958696 25959095 -95884761 + Lx3C LINE L1 6554 6974 -2 5 783 30 0 0 0 chr11 25959095 25959125 -95884731 + AT_rich Low_complexity Low_complexity 1 30 0 5 783 540 30 0 0 chr11 25959580 25959646 -95884210 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 783 187 283 0 0 chr11 25961026 25961072 -95882784 + MIRc SINE MIR 121 166 -102 5 783 193 276 52 13 chr11 25961122 25961199 -95882657 - L4 LINE RTE -1757 272 193 5 783 360 0 0 0 chr11 25961839 25961879 -95881977 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 783 27 0 0 0 chr11 25962052 25962079 -95881777 + AT_rich Low_complexity Low_complexity 1 27 0 5 783 252 0 0 0 chr11 25962893 25962921 -95880935 + (T)n Simple_repeat Simple_repeat 1 28 0 5 783 31 0 0 0 chr11 25963265 25963296 -95880560 + AT_rich Low_complexity Low_complexity 1 31 0 5 783 459 243 28 9 chr11 25963889 25963997 -95879859 + PB1D10 SINE Alu 6 115 -2 5 783 23 0 0 0 chr11 25965236 25965259 -95878597 + AT_rich Low_complexity Low_complexity 1 23 0 5 783 839 184 14 0 chr11 25965771 25965918 -95877938 + B1_Mur2 SINE Alu 1 149 0 5 783 4225 50 11 7 chr11 25966155 25966694 -95877162 - L1Md_F3 LINE L1 -15 6569 6029 5 783 317 307 59 0 chr11 25966783 25966884 -95876972 - PB1D10 SINE Alu 0 117 11 5 783 305 299 95 39 chr11 25967073 25967344 -95876512 + L2b LINE L2 2830 3112 -263 5 783 530 281 0 9 chr11 25967612 25967727 -95876129 + B1_Mur1 SINE Alu 34 147 -2 5 783 227 213 0 74 chr11 25968198 25968279 -95875577 + GA-rich Low_complexity Low_complexity 3 77 0 5 783 412 265 0 1 chr11 25968329 25968417 -95875439 + B3 SINE B2 101 187 -29 5 783 279 0 0 0 chr11 25968417 25968448 -95875408 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 783 251 295 10 78 chr11 25968448 25968462 -95875394 + B3A SINE B2 184 198 0 5 783 535 288 15 15 chr11 25968510 25968644 -95875212 + ID_B1 SINE B4 79 212 -12 5 783 227 280 173 0 chr11 25969408 25969483 -95874373 - BC1_Mm scRNA scRNA -62 90 3 5 783 217 218 146 0 chr11 25969499 25969554 -95874302 - PB1D10 SINE Alu -9 108 46 5 783 384 119 0 0 chr11 25969600 25969659 -95874197 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 5 783 304 288 114 20 chr11 25969720 25969869 -95873987 + MER5A1 DNA MER1_type 3 165 -1 5 783 31 0 0 0 chr11 25975218 25975249 -95868607 + AT_rich Low_complexity Low_complexity 1 31 0 5 783 28 0 0 0 chr11 25975855 25975883 -95867973 + GC_rich Low_complexity Low_complexity 1 28 0 5 783 198 0 0 0 chr11 25976808 25976830 -95867026 + (TTG)n Simple_repeat Simple_repeat 3 24 0 5 783 245 311 68 0 chr11 25976841 25976915 -95866941 - ID4 SINE ID -4 79 1 5 783 336 378 65 31 chr11 25976950 25976971 -95866885 - B4 SINE B4 -4 288 269 5 783 234 0 0 0 chr11 25976971 25976997 -95866859 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 783 493 337 76 4 chr11 25976997 25977204 -95866652 - B4A SINE B4 -24 268 52 5 783 342 149 22 207 chr11 25977981 25978116 -95865740 - PB1D9 SINE Alu -1 119 10 5 783 324 0 0 0 chr11 25978987 25979023 -95864833 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 783 278 300 11 22 chr11 25979255 25979347 -95864509 + MER112 DNA MER1_type 2 92 -169 5 783 417 141 0 0 chr11 25979386 25979457 -95864399 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 783 335 286 79 8 chr11 25980453 25980580 -95863276 - MLT1A1 LTR MaLR -5 403 268 5 783 239 344 83 13 chr11 25980606 25980762 -95863094 - MLT1A1 LTR MaLR -198 167 1 5 783 948 258 37 50 chr11 25981284 25981606 -95862250 + Lx8 LINE L1 6759 7076 -397 5 783 249 285 0 24 chr11 25981705 25981831 -95862025 + Lx8 LINE L1 7349 7471 -2 5 783 430 306 0 0 chr11 25981926 25982034 -95861822 + PB1D10 SINE Alu 8 115 -2 5 783 31 26 0 0 chr11 25982038 25982076 -95861780 + AT_rich Low_complexity Low_complexity 1 38 0 5 783 182 310 99 10 chr11 25982663 25982764 -95861092 + L2c LINE L2 3222 3331 -56 5 783 324 0 0 0 chr11 25982897 25982933 -95860923 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 783 464 220 99 7 chr11 25984468 25984610 -95859246 - Tigger7 DNA MER2_type -8 2483 2329 6 783 1104 331 38 48 chr11 25984579 25985084 -95858772 - Tigger7 DNA MER2_type -1991 500 1 6 783 316 172 11 11 chr11 25987282 25987370 -95856486 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 783 303 177 0 0 chr11 25987437 25987499 -95856357 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 783 385 327 7 7 chr11 25987511 25987665 -95856191 + (CATA)n Simple_repeat Simple_repeat 3 156 0 6 783 559 219 11 0 chr11 25987667 25987845 -95856011 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 783 30 59 0 0 chr11 25988201 25988252 -95855604 + AT_rich Low_complexity Low_complexity 1 51 0 6 783 234 265 0 0 chr11 25988877 25988945 -95854911 + (TATG)n Simple_repeat Simple_repeat 3 70 0 6 783 805 134 8 23 chr11 25990219 25990349 -95853507 - B1_Mm SINE Alu -18 129 2 6 783 281 178 41 0 chr11 25991414 25991487 -95852369 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 6 783 237 286 36 0 chr11 25991539 25991623 -95852233 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 783 441 0 0 0 chr11 25991646 25991695 -95852161 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 783 436 256 78 0 chr11 25992269 25992398 -95851458 + LTR48B LTR ERV1 126 264 -380 6 783 379 197 5 38 chr11 25992684 25992869 -95850987 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 783 642 306 17 28 chr11 25992986 25993164 -95850692 + ID_B1 SINE B4 8 183 -41 6 783 351 0 0 0 chr11 25993165 25993204 -95850652 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 783 345 140 0 0 chr11 25993718 25993775 -95850081 + (A)n Simple_repeat Simple_repeat 1 57 0 6 783 639 182 71 57 chr11 25994079 25994219 -95849637 + B1_Mus2 SINE Alu 1 142 -5 6 783 225 0 0 0 chr11 25994376 25994401 -95849455 + (T)n Simple_repeat Simple_repeat 1 25 0 6 783 3253 38 0 2 chr11 25994431 25994825 -95849031 - L1Md_F2 LINE L1 0 6582 6190 6 783 282 313 30 104 chr11 25994997 25995161 -95848695 + RMER12 LTR ERVK 719 870 -452 6 783 595 275 172 22 chr11 25995155 25995382 -95848474 - B4 SINE B4 -30 262 2 6 783 22 0 0 0 chr11 25996522 25996544 -95847312 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 234 91 0 0 chr11 25997481 25997514 -95846342 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 6 783 415 235 0 0 chr11 25998264 25998349 -95845507 + MER34 LTR ERV1 372 456 -86 6 783 195 42 0 0 chr11 25998585 25998609 -95845247 + (TCTTG)n Simple_repeat Simple_repeat 2 25 0 6 783 626 113 0 9 chr11 25998637 25998753 -95845103 + (TG)n Simple_repeat Simple_repeat 2 116 0 6 783 394 330 81 41 chr11 25998844 25999065 -95844791 - B4A SINE B4 -9 283 54 6 783 348 292 54 116 chr11 25999053 25999200 -95844656 - B1F1 SINE Alu -9 140 3 6 783 21 0 0 0 chr11 25999639 25999660 -95844196 + AT_rich Low_complexity Low_complexity 1 21 0 6 783 1234 278 52 3 chr11 26000740 26001065 -95842791 + MER58B DNA MER1_type 1 341 0 1 783 902 128 0 8 chr11 26001792 26001926 -95841930 - B1_Mus1 SINE Alu -15 133 1 2 783 324 252 94 56 chr11 26001971 26002131 -95841725 - B3A SINE B2 -16 182 17 3 783 23 0 0 0 chr11 26005911 26005934 -95837922 + AT_rich Low_complexity Low_complexity 1 23 0 4 783 305 345 9 9 chr11 26006693 26006804 -95837052 + MER34 LTR ERV1 1 111 -431 5 783 304 187 154 0 chr11 26007664 26007755 -95836101 + MER34 LTR ERV1 373 477 -65 6 783 182 91 30 0 chr11 26009576 26009609 -95834247 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 7 783 350 254 44 0 chr11 26009628 26009724 -95834132 + B1F1 SINE Alu 13 117 0 8 783 306 319 29 29 chr11 26010819 26010958 -95832898 - B1F SINE Alu -8 141 3 9 783 647 95 0 72 chr11 26011659 26011784 -95832072 + L1_Mus2 LINE L1 6450 6565 -1 1 783 1068 221 5 29 chr11 26012084 26012294 -95831562 + B3 SINE B2 6 210 -6 1 783 189 0 0 0 chr11 26012690 26012711 -95831145 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 783 503 246 70 23 chr11 26012838 26013009 -95830847 - MER58B DNA MER1_type -156 185 7 1 783 372 94 0 0 chr11 26013224 26013277 -95830579 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 783 337 274 21 0 chr11 26013380 26013475 -95830381 - L1ME3A LINE L1 -60 6113 6017 1 783 588 95 0 0 chr11 26013678 26013762 -95830094 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 783 214 135 58 0 chr11 26013882 26013934 -95829922 + CT-rich Low_complexity Low_complexity 6 60 0 1 783 479 290 130 0 chr11 26013945 26014083 -95829773 - B3A SINE B2 -42 156 1 1 783 1203 48 7 0 chr11 26014831 26014976 -95828880 + B1_Mus1 SINE Alu 3 148 0 1 783 306 0 0 0 chr11 26014976 26015010 -95828846 + (CAAAAA)n Simple_repeat Simple_repeat 6 39 0 2 783 24 32 0 0 chr11 26015060 26015091 -95828765 + AT_rich Low_complexity Low_complexity 1 31 0 2 783 189 0 0 0 chr11 26015751 26015772 -95828084 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 783 1191 85 30 69 chr11 26015772 26015974 -95827882 - B2_Mm2 SINE B2 0 195 2 2 783 186 43 0 0 chr11 26016029 26016052 -95827804 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 783 22 0 0 0 chr11 26016769 26016791 -95827065 + AT_rich Low_complexity Low_complexity 1 22 0 2 783 21 0 0 0 chr11 26017045 26017066 -95826790 + AT_rich Low_complexity Low_complexity 1 21 0 2 783 493 340 15 20 chr11 26017293 26017491 -95826365 - B3A SINE B2 0 198 2 2 783 364 294 80 84 chr11 26018730 26019005 -95824851 - RMER10A LTR ERVL -19 423 150 2 783 234 62 0 0 chr11 26019373 26019405 -95824451 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 2 783 184 333 42 0 chr11 26023654 26023726 -95820130 + MIRb SINE MIR 126 200 -68 3 783 1173 91 15 56 chr11 26025287 26025484 -95818372 - B2_Mm1a SINE B2 -2 191 3 3 783 745 240 62 48 chr11 26025971 26026181 -95817675 + B3 SINE B2 2 214 -2 3 783 231 301 33 0 chr11 26026397 26026488 -95817368 - L2a LINE L2 -34 3392 3309 3 783 180 111 0 0 chr11 26026777 26026804 -95817052 + (GGA)n Simple_repeat Simple_repeat 2 28 0 3 783 1283 144 171 16 chr11 26026952 26027256 -95816600 - Lx9 LINE L1 -8 7636 7286 3 783 281 355 144 25 chr11 26027674 26028041 -95815815 - L2a LINE L2 -663 2756 2346 3 783 747 260 15 15 chr11 26028068 26028267 -95815589 - B3 SINE B2 -17 199 1 3 783 2533 86 18 23 chr11 26028870 26029262 -95814594 - BGLII LTR ERVK 0 421 32 3 783 198 0 0 0 chr11 26029717 26029739 -95814117 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 783 210 71 0 0 chr11 26032452 26032480 -95811376 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 783 288 0 0 0 chr11 26033071 26033103 -95810753 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 783 288 286 97 48 chr11 26033118 26033221 -95810635 - PB1D10 SINE Alu 0 117 10 4 783 333 0 0 0 chr11 26035133 26035170 -95808686 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 783 1323 85 271 0 chr11 26035803 26036039 -95807817 - L1_Mus3 LINE L1 -6 6632 6333 4 783 537 362 46 57 chr11 26036701 26037070 -95806786 + MER20B DNA MER1_type 36 400 -383 4 783 355 297 110 28 chr11 26037140 26037358 -95806498 + MER20B DNA MER1_type 547 782 -1 4 783 4541 192 17 16 chr11 26038708 26039580 -95804276 + Lx5 LINE L1 6170 7042 -8 4 783 1179 250 142 7 chr11 26040009 26040399 -95803457 + L1MA6 LINE L1 5373 5807 -493 4 783 441 36 0 0 chr11 26040399 26040454 -95803402 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 783 1179 250 152 11 chr11 26040454 26040730 -95803126 + L1MA6 LINE L1 5808 6158 -133 4 783 310 270 76 48 chr11 26040743 26040848 -95803008 + PB1D10 SINE Alu 1 108 -9 4 783 411 38 0 0 chr11 26041121 26041174 -95802682 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 783 506 299 91 6 chr11 26042549 26042714 -95801142 + B3A SINE B2 1 179 -19 5 783 566 277 71 5 chr11 26042932 26043128 -95800728 - MER2 DNA MER2_type -15 330 122 5 783 21 36 0 0 chr11 26043239 26043267 -95800589 + AT_rich Low_complexity Low_complexity 1 28 0 5 783 36 23 0 0 chr11 26043713 26043756 -95800100 + AT_rich Low_complexity Low_complexity 1 43 0 5 783 1170 112 0 0 chr11 26044881 26045059 -95798797 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 783 747 0 0 0 chr11 26045076 26045159 -95798697 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 5 783 216 0 0 0 chr11 26046147 26046171 -95797685 + (A)n Simple_repeat Simple_repeat 1 24 0 5 783 220 386 23 0 chr11 26046182 26046270 -95797586 - L2 LINE L2 -739 2680 2591 5 783 330 225 0 0 chr11 26046510 26046590 -95797266 + GA-rich Low_complexity Low_complexity 1 80 0 5 783 583 311 82 32 chr11 26046716 26046995 -95796861 - MTEb LTR MaLR -43 336 44 5 783 199 0 0 61 chr11 26047488 26047521 -95796335 + (TAA)n Simple_repeat Simple_repeat 3 33 0 6 783 195 162 0 0 chr11 26047523 26047560 -95796296 + A-rich Low_complexity Low_complexity 3 39 0 6 783 214 211 0 0 chr11 26047902 26047940 -95795916 + A-rich Low_complexity Low_complexity 1 38 0 6 783 312 306 143 0 chr11 26049097 26049195 -95794661 + PB1D10 SINE Alu 5 116 -1 6 783 538 296 15 0 chr11 26049202 26049334 -95794522 + RSINE1 SINE B4 4 137 -28 6 783 578 39 13 0 chr11 26049370 26049447 -95794409 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 783 441 0 0 0 chr11 26049447 26049495 -95794361 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 783 1169 81 0 0 chr11 26049535 26049683 -95794173 + B1_Mus1 SINE Alu 1 148 0 6 783 258 32 0 0 chr11 26049683 26049714 -95794142 + (A)n Simple_repeat Simple_repeat 1 31 0 6 783 216 97 0 0 chr11 26049794 26049825 -95794031 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 6 783 293 250 75 19 chr11 26050389 26050495 -95793361 - PB1D7 SINE Alu -8 112 1 7 783 600 297 109 38 chr11 26050580 26051052 -95792804 + MER31B LTR ERV1 1 485 0 7 783 32 57 0 0 chr11 26051254 26051307 -95792549 + AT_rich Low_complexity Low_complexity 1 53 0 7 783 261 266 98 27 chr11 26052469 26052581 -95791275 - MTEa LTR MaLR -11 368 249 7 783 13673 148 17 3 chr11 26054807 26058526 -95785330 + Lx LINE L1 2752 6539 -115 7 783 324 70 0 0 chr11 26058532 26058575 -95785281 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 783 534 54 0 0 chr11 26058586 26058660 -95785196 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 7 783 21 0 0 0 chr11 26059992 26060013 -95783843 + AT_rich Low_complexity Low_complexity 1 21 0 7 783 23 0 0 0 chr11 26060267 26060290 -95783566 + AT_rich Low_complexity Low_complexity 1 23 0 7 783 427 217 9 0 chr11 26061873 26061979 -95781877 - B1_Mus2 SINE Alu 0 147 41 7 783 710 204 21 7 chr11 26062214 26062357 -95781499 + B1_Mus1 SINE Alu 3 147 -1 8 783 235 127 46 31 chr11 26062357 26062422 -95781434 + (CAAA)n Simple_repeat Simple_repeat 1 66 0 8 783 435 38 0 0 chr11 26063092 26063145 -95780711 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 783 418 305 0 54 chr11 26065094 26065205 -95778651 - MMAR1 DNA Mariner -568 718 614 8 783 5459 80 16 3 chr11 26065205 26065948 -95777908 + L1_Mus3 LINE L1 5879 6631 -7 8 783 3432 122 51 16 chr11 26067150 26067841 -95776015 + RLTR13D4 LTR ERVK 1 1033 0 8 783 247 250 33 0 chr11 26068455 26068547 -95775309 + (TA)n Simple_repeat Simple_repeat 2 96 0 8 783 228 100 0 0 chr11 26069050 26069090 -95774766 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 8 783 225 0 0 0 chr11 26069099 26069124 -95774732 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 8 783 23 68 0 0 chr11 26069974 26070018 -95773838 + AT_rich Low_complexity Low_complexity 1 44 0 8 783 21 0 0 0 chr11 26071197 26071218 -95772638 + AT_rich Low_complexity Low_complexity 1 21 0 9 783 29396 37 0 0 chr11 26071474 26075229 -95768627 + L1Md_T LINE L1 1832 5586 -297 9 783 9043 5 0 0 chr11 26075229 26076225 -95767631 + L1Md_T LINE L1 5587 6582 0 9 783 426 139 0 0 chr11 26076360 26076432 -95767424 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 9 783 771 172 31 0 chr11 26076444 26076572 -95767284 + B1_Mur3 SINE Alu 11 142 -7 9 783 1176 75 0 0 chr11 26077574 26077721 -95766135 - B1_Mm SINE Alu 0 147 1 9 783 327 313 103 31 chr11 26078231 26078455 -95765401 + L2 LINE L2 1589 1828 -1591 9 783 241 290 117 29 chr11 26078518 26078621 -95765235 + MER63B DNA AcHobo 323 434 -2 9 783 308 341 264 16 chr11 26078623 26079305 -95764551 + L2 LINE L2 1820 2670 -749 9 783 7417 62 5 1 chr11 26079360 26080462 -95763394 + L1_Mus1 LINE L1 5462 6567 0 9 783 195 42 0 0 chr11 26080499 26080523 -95763333 + (A)n Simple_repeat Simple_repeat 1 24 0 9 783 206 200 20 20 chr11 26080573 26080624 -95763232 + L2 LINE L2 2793 2843 -576 9 783 313 87 59 34 chr11 26082165 26082284 -95761572 + (TA)n Simple_repeat Simple_repeat 2 123 0 9 783 709 236 14 7 chr11 26082402 26082543 -95761313 - B1F SINE Alu -2 147 6 1 97 1145 131 17 17 chr11 26083270 26083449 -95760407 + B2_Mm2 SINE B2 1 179 -16 1 784 234 0 0 0 chr11 26083570 26083596 -95760260 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 784 1336 27 27 0 chr11 26083632 26084079 -95759777 + (CACAG)n Simple_repeat Simple_repeat 1 459 0 1 784 23 0 0 0 chr11 26084661 26084684 -95759172 + AT_rich Low_complexity Low_complexity 1 23 0 1 784 225 65 0 0 chr11 26085651 26085682 -95758174 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 784 318 50 0 0 chr11 26086780 26086820 -95757036 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1 784 1414 194 34 172 chr11 26089367 26089803 -95754053 - ORR1C2 LTR MaLR -2 382 7 1 784 929 240 21 0 chr11 26089803 26089995 -95753861 - B3 SINE B2 -19 197 2 1 784 225 0 0 0 chr11 26090004 26090029 -95753827 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1 784 498 252 20 54 chr11 26090323 26090470 -95753386 - ID_B1 SINE B4 0 224 83 1 784 383 234 35 117 chr11 26091032 26091058 -95752798 + MT2B LTR ERVL 147 160 -441 1 784 662 236 24 0 chr11 26091058 26091185 -95752671 + B1_Mur1 SINE Alu 2 131 -18 1 784 311 280 123 80 chr11 26091819 26091982 -95751874 + B4 SINE B4 54 223 -69 1 784 639 189 83 8 chr11 26091850 26091983 -95751873 + B1_Mur4 SINE Alu 7 149 -1 1 784 572 314 25 69 chr11 26092137 26092339 -95751517 - B3A SINE B2 -5 193 1 1 784 299 294 141 16 chr11 26093344 26093465 -95750391 - MER63B DNA AcHobo 0 436 301 1 784 23 0 0 0 chr11 26094140 26094163 -95749693 + AT_rich Low_complexity Low_complexity 1 23 0 1 784 218 145 17 52 chr11 26094970 26095028 -95748828 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 1 784 21 36 0 0 chr11 26096191 26096219 -95747637 + AT_rich Low_complexity Low_complexity 1 28 0 1 784 631 279 29 9 chr11 26097154 26097364 -95746492 - ID_B1 SINE B4 -7 217 4 1 784 989 188 10 20 chr11 26097724 26097925 -95745931 - URR1B DNA MER1_type 0 225 27 1 784 279 0 0 0 chr11 26097980 26098011 -95745845 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 784 307 269 89 7 chr11 26098635 26098770 -95745086 + RSINE1 SINE B4 3 148 -17 1 784 235 258 32 0 chr11 26099582 26099644 -95744212 - MER33 DNA MER1_type -1 323 260 1 784 392 254 183 20 chr11 26099659 26099856 -95744000 - MER33 DNA MER1_type -88 236 8 1 784 528 264 57 0 chr11 26100778 26100918 -95742938 - MER5A1 DNA MER1_type -18 148 1 1 784 423 0 0 0 chr11 26101161 26101208 -95742648 + (CACAG)n Simple_repeat Simple_repeat 5 51 0 1 784 481 94 42 35 chr11 26101459 26101602 -95742254 + (CA)n Simple_repeat Simple_repeat 1 144 0 1 784 260 169 31 82 chr11 26101603 26101700 -95742156 + (CACAC)n Simple_repeat Simple_repeat 4 95 0 1 784 465 132 65 6 chr11 26101703 26101871 -95741985 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 784 411 21 0 0 chr11 26101871 26101919 -95741937 + (CACAC)n Simple_repeat Simple_repeat 1 48 0 1 784 252 173 29 64 chr11 26102456 26102629 -95741227 + (CACTA)n Simple_repeat Simple_repeat 4 170 0 1 784 555 312 107 98 chr11 26103814 26104233 -95739623 + MLT1E2 LTR MaLR 6 428 -77 1 784 253 291 89 0 chr11 26104215 26104294 -95739562 + MLT1E1A LTR MaLR 586 671 -9 1 784 7537 42 1 3 chr11 26104921 26105843 -95738013 + L1Md_T LINE L1 5663 6582 0 1 784 1112 342 77 31 chr11 26106640 26107288 -95736568 + Tigger11a DNA MER2_type 41 718 -17 1 784 370 186 0 41 chr11 26109350 26109423 -95734433 + ID4 SINE ID 3 72 -11 1 784 202 127 73 0 chr11 26110413 26110468 -95733388 + G-rich Low_complexity Low_complexity 3 61 0 1 784 180 0 0 0 chr11 26111052 26111072 -95732784 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 784 2953 69 5 10 chr11 26111962 26112358 -95731498 + MTA_Mm LTR MaLR 3 396 0 1 784 20854 159 9 90 chr11 26112574 26116092 -95727764 - L1_Mus3 LINE L1 -1 6637 3361 1 784 1055 97 7 0 chr11 26116092 26116237 -95727619 - B1_Mus2 SINE Alu -1 146 1 1 784 20854 159 9 90 chr11 26116237 26117589 -95726267 - L1_Mus3 LINE L1 -1 3360 2100 1 784 1194 41 7 0 chr11 26117589 26117735 -95726121 + B1_Mus2 SINE Alu 1 147 0 1 784 20854 131 17 77 chr11 26117735 26119501 -95724355 - L1_Mus3 LINE L1 -3778 2099 409 1 784 639 0 0 0 chr11 26119504 26119575 -95724281 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 1 784 275 313 100 52 chr11 26119874 26120088 -95723768 + MLT1H2 LTR MaLR 52 325 -224 1 784 559 291 31 29 chr11 26120378 26120712 -95723144 + Lx8 LINE L1 6906 7294 -179 1 784 21 0 0 0 chr11 26120712 26120733 -95723123 + AT_rich Low_complexity Low_complexity 1 21 0 1 784 231 259 24 24 chr11 26120803 26120886 -95722970 + Lx8 LINE L1 7386 7468 -5 1 784 243 351 13 0 chr11 26120913 26120990 -95722866 + B4A SINE B4 2 79 -213 1 784 34146 67 3 10 chr11 26121144 26127243 -95716613 - L1Md_F2 LINE L1 -1 6581 535 1 784 234 244 0 75 chr11 26127277 26127410 -95716446 + T-rich Low_complexity Low_complexity 2 124 0 1 784 210 105 0 0 chr11 26127424 26127462 -95716394 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 784 780 177 0 0 chr11 26127493 26127623 -95716233 - B3 SINE B2 -85 131 2 1 784 2729 149 24 4 chr11 26128046 26128512 -95715344 - Lx LINE L1 0 6654 6180 1 784 353 58 0 19 chr11 26128593 26128646 -95715210 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 784 2505 146 26 24 chr11 26128988 26129450 -95714406 - RMER4A LTR ERVK 0 466 4 1 784 24 0 0 0 chr11 26130243 26130267 -95713589 + AT_rich Low_complexity Low_complexity 1 24 0 1 784 304 218 26 39 chr11 26132325 26132478 -95711378 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 784 246 261 0 0 chr11 26133246 26133292 -95710564 - ID4 SINE ID -36 47 2 1 784 252 100 0 0 chr11 26133567 26133607 -95710249 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 1 784 685 135 0 0 chr11 26133607 26133711 -95710145 - B2_Mm2 SINE B2 -88 107 4 1 784 1281 230 60 51 chr11 26134121 26134534 -95709322 + RLTR20A LTR ERVK 58 474 -67 1 784 340 264 0 0 chr11 26134562 26134634 -95709222 + B4 SINE B4 2 73 -219 1 784 554 195 260 30 chr11 26135206 26135375 -95708481 + B3 SINE B2 3 210 -6 1 784 405 329 88 42 chr11 26135814 26136052 -95707804 + MLT1F LTR MaLR 179 427 -121 1 784 194 191 88 73 chr11 26136439 26136472 -95707384 - L4 LINE RTE -343 1686 1648 1 784 608 25 0 0 chr11 26136472 26136552 -95707304 + L1Md_T LINE L1 6502 6581 -1 1 784 194 191 88 73 chr11 26136552 26136586 -95707270 - L4 LINE RTE -382 1647 1618 1 784 35 41 0 0 chr11 26137615 26137664 -95706192 + AT_rich Low_complexity Low_complexity 1 49 0 1 784 315 0 0 0 chr11 26137861 26137896 -95705960 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 784 3579 144 22 7 chr11 26139353 26139942 -95703914 + Lx2B LINE L1 6398 6995 -5 1 784 594 39 0 0 chr11 26140410 26140487 -95703369 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 784 382 365 7 52 chr11 26140498 26140651 -95703205 - RSINE1 SINE B4 -19 146 1 1 784 3397 30 2 0 chr11 26141136 26141531 -95702325 - MTA_Mm LTR MaLR 0 396 1 1 784 261 163 0 0 chr11 26141709 26141758 -95702098 + (TATG)n Simple_repeat Simple_repeat 1 49 0 1 784 704 200 0 6 chr11 26141756 26141937 -95701919 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 784 579 258 61 16 chr11 26142018 26142263 -95701593 + Lx9 LINE L1 6730 7017 -627 1 784 680 207 241 0 chr11 26142286 26142460 -95701396 + B3 SINE B2 1 216 0 1 784 1020 90 21 0 chr11 26142478 26142622 -95701234 + B1_Mm SINE Alu 1 147 0 1 784 190 55 0 53 chr11 26142622 26142660 -95701196 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 784 352 208 48 19 chr11 26142705 26142808 -95701048 - L1MC1 LINE L1 -209 6124 6019 1 784 411 21 0 0 chr11 26142812 26142860 -95700996 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1 784 7007 97 7 1 chr11 26142867 26144429 -95699427 - L1_Mus2 LINE L1 -1 6565 4997 1 784 20838 138 24 22 chr11 26144498 26145892 -95697964 - Lx LINE L1 -1 6653 5271 1 784 927 0 0 0 chr11 26145892 26145995 -95697861 + (TTC)n Simple_repeat Simple_repeat 3 105 0 1 784 20838 170 18 16 chr11 26145995 26149463 -95694393 - Lx LINE L1 -616 5270 1795 1 784 839 176 86 20 chr11 26149463 26149660 -95694196 - ORR1D1 LTR MaLR -164 210 1 1 784 229 287 53 44 chr11 26149665 26149778 -95694078 - L1MC1 LINE L1 -477 5856 5743 1 784 419 245 28 9 chr11 26150632 26150739 -95693117 + PB1D10 SINE Alu 9 117 0 1 784 203 0 0 36 chr11 26151245 26151273 -95692583 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1 784 408 342 116 18 chr11 26151284 26151448 -95692408 - B3A SINE B2 -18 180 1 1 784 23 0 0 0 chr11 26151492 26151515 -95692341 + AT_rich Low_complexity Low_complexity 1 23 0 1 784 216 220 34 0 chr11 26152621 26152680 -95691176 - MIR3 SINE MIR -8 200 140 1 784 248 275 70 4 chr11 26152711 26152833 -95691023 - L1M4b LINE L1 -3722 3284 3182 1 784 3689 261 55 32 chr11 26153086 26154201 -95689655 + Lx7 LINE L1 6221 7360 -336 1 784 1083 161 43 0 chr11 26154211 26154397 -95689459 - B2_Mm2 SINE B2 0 195 2 1 784 320 313 16 0 chr11 26154416 26154515 -95689341 - PB1D10 SINE Alu -34 115 13 1 784 363 312 19 70 chr11 26154522 26154780 -95689076 - L1M5 LINE L1 -1756 4390 4146 1 784 246 128 0 0 chr11 26154797 26154836 -95689020 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 1 784 261 0 0 0 chr11 26154834 26154863 -95688993 + (T)n Simple_repeat Simple_repeat 1 29 0 1 784 21 71 0 0 chr11 26154953 26154995 -95688861 + AT_rich Low_complexity Low_complexity 1 42 0 1 784 5096 145 7 11 chr11 26154999 26155817 -95688039 - Lx4A LINE L1 -7 7051 6237 1 784 6606 124 361 82 chr11 26155828 26156860 -95686996 - L1_Mur2 LINE L1 -1971 3906 2943 1 784 1265 94 17 0 chr11 26156860 26157040 -95686816 - B2_Mm2 SINE B2 -11 184 2 1 784 6606 124 361 82 chr11 26157040 26157420 -95686436 - L1_Mur2 LINE L1 -2935 2942 2108 1 784 4208 81 12 7 chr11 26157420 26158024 -95685832 + L1_Mus3 LINE L1 6055 6638 0 2 784 6606 124 361 82 chr11 26158024 26158068 -95685788 - L1_Mur2 LINE L1 -3770 2107 2058 1 784 225 0 0 0 chr11 26158068 26158093 -95685763 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 784 6606 135 184 50 chr11 26158093 26159419 -95684437 - L1_Mur2 LINE L1 -3820 2057 529 1 784 437 279 104 97 chr11 26159554 26160321 -95683535 - L1MEe LINE L1 -2249 3897 3125 2 784 488 291 128 36 chr11 26160433 26161103 -95682753 - L1MEe LINE L1 -3994 2172 1441 2 784 426 348 82 5 chr11 26161106 26161314 -95682542 + MER58A DNA MER1_type 1 224 0 2 784 1688 87 67 8 chr11 26161330 26161584 -95682272 + L1Md_F2 LINE L1 6302 6570 -12 2 784 33 56 0 0 chr11 26162134 26162188 -95681668 + AT_rich Low_complexity Low_complexity 1 54 0 2 784 366 97 69 0 chr11 26162983 26163055 -95680801 + L1Md_T LINE L1 6504 6580 -2 2 784 768 74 9 11 chr11 26163161 26163275 -95680581 - B1_Mus2 SINE Alu 0 147 42 2 784 284 0 0 160 chr11 26163278 26163422 -95680434 + (CTCTG)n Simple_repeat Simple_repeat 5 125 0 2 784 373 51 0 78 chr11 26163423 26163487 -95680369 - PB1D9 SINE Alu -61 59 1 2 784 324 0 0 0 chr11 26163824 26163860 -95679996 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 784 393 233 81 29 chr11 26163981 26164138 -95679718 - LTR48B LTR ERV1 0 644 375 2 784 430 228 33 50 chr11 26164568 26164688 -95679168 - MLT2F LTR ERVL -121 542 425 2 784 283 344 117 23 chr11 26164850 26164978 -95678878 - MLT2F LTR ERVL -523 140 1 2 784 1139 266 92 29 chr11 26165134 26165483 -95678373 + MTE2b LTR MaLR 1 371 -8 2 784 204 158 0 0 chr11 26165488 26165526 -95678330 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 784 868 27 18 0 chr11 26165560 26165671 -95678185 - B1_Mm SINE Alu -2 145 33 2 784 490 330 80 0 chr11 26165852 26166040 -95677816 - ERVL-E-int LTR ERVL -978 4689 4487 2 784 432 350 86 13 chr11 26166061 26166362 -95677494 - ERVL-E-int LTR ERVL -1399 4362 4040 2 784 395 342 19 45 chr11 26166704 26166860 -95676996 - MLT1F LTR MaLR -394 154 3 2 784 708 192 0 23 chr11 26168645 26168778 -95675078 - B1_Mur3 SINE Alu -1 148 19 2 784 457 243 160 12 chr11 26168806 26169056 -95674800 - L1MA6 LINE L1 -17 6283 5997 2 784 3245 89 35 9 chr11 26169144 26169436 -95674420 + MT2C_Mm LTR ERVL 1 304 -171 2 784 348 24 0 0 chr11 26169436 26169477 -95674379 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 784 3245 89 35 9 chr11 26169477 26169647 -95674209 + MT2C_Mm LTR ERVL 305 475 0 2 784 425 89 0 15 chr11 26170004 26170072 -95673784 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 784 27 0 0 0 chr11 26170141 26170168 -95673688 + AT_rich Low_complexity Low_complexity 1 27 0 2 784 270 292 25 8 chr11 26170194 26170315 -95673541 + L1Md_F LINE L1 578 700 -5819 2 784 667 125 0 0 chr11 26170334 26170438 -95673418 - L1_Mus3 LINE L1 -638 6000 5897 2 784 11267 102 26 15 chr11 26170435 26170854 -95673002 + Lx LINE L1 1651 2073 -1841 2 784 180 0 0 0 chr11 26170854 26170874 -95672982 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 784 11267 102 26 15 chr11 26170874 26171592 -95672264 + Lx LINE L1 2074 2787 -1127 2 784 441 0 0 0 chr11 26171592 26171641 -95672215 + (CAA)n Simple_repeat Simple_repeat 3 51 0 2 784 11267 115 26 29 chr11 26171641 26172481 -95671375 + Lx LINE L1 2788 3666 -2220 2 784 1269 61 6 0 chr11 26172481 26172645 -95671211 + B2_Mm1t SINE B2 1 165 -28 2 784 297 0 0 0 chr11 26172645 26172678 -95671178 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 784 1163 138 0 25 chr11 26172678 26172713 -95671143 + B2_Mm2 SINE B2 164 195 0 2 784 9215 171 26 92 chr11 26172713 26173041 -95670815 + Lx LINE L1 3667 3992 -1894 2 784 5470 64 14 3 chr11 26173041 26173747 -95670109 + L1_Mus2 LINE L1 5849 6562 -4 2 784 6133 116 42 35 chr11 26173789 26175149 -95668707 + Lx LINE L1 5253 6637 -17 2 784 216 0 0 0 chr11 26175160 26175184 -95668672 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 784 763 228 63 5 chr11 26175200 26175390 -95668466 + B3 SINE B2 1 201 -15 2 784 286 180 59 10 chr11 26175536 26175637 -95668219 + (TA)n Simple_repeat Simple_repeat 1 106 0 2 784 647 255 7 54 chr11 26176135 26176284 -95667572 + RSINE1 SINE B4 3 144 -21 2 784 1175 292 88 51 chr11 26176329 26177085 -95666771 - L1MB7 LINE L1 -74 6110 5315 2 784 670 290 0 72 chr11 26177085 26177293 -95666563 - B3A SINE B2 -5 193 1 2 784 1175 276 45 48 chr11 26177293 26177686 -95666170 - L1MB7 LINE L1 -832 5314 4918 2 784 229 290 96 55 chr11 26178445 26178591 -95665265 + MLT1A0 LTR MaLR 1 152 -213 2 784 540 274 110 0 chr11 26179210 26179374 -95664482 - MER2 DNA MER2_type -9 336 155 2 784 6504 101 42 8 chr11 26180923 26182028 -95661828 - L1_Mus3 LINE L1 -7 6631 5496 2 784 558 0 0 0 chr11 26182691 26182753 -95661103 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 784 330 26 0 0 chr11 26184110 26184149 -95659707 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 784 360 315 79 31 chr11 26185410 26185728 -95658128 + L1MA10 LINE L1 5999 6331 -3 2 784 207 0 0 0 chr11 26186012 26186035 -95657821 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 2 784 888 114 13 7 chr11 26186530 26186680 -95657176 - L1_Mus3 LINE L1 -12 6626 6476 2 784 1753 145 48 3 chr11 26186856 26187167 -95656689 - ORR1A2 LTR MaLR -2 325 1 2 784 198 0 0 0 chr11 26187286 26187308 -95656548 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 784 204 184 0 0 chr11 26187559 26187608 -95656248 + A-rich Low_complexity Low_complexity 1 49 0 2 784 719 292 89 77 chr11 26187642 26187968 -95655888 + MTE2a LTR MaLR 22 351 -28 2 784 377 337 78 10 chr11 26189348 26189552 -95654304 + MER20 DNA MER1_type 1 218 -1 2 784 287 253 12 35 chr11 26189716 26189802 -95654054 + ID SINE ID 1 84 -140 2 784 23 0 0 0 chr11 26190131 26190154 -95653702 + AT_rich Low_complexity Low_complexity 1 23 0 2 784 204 40 0 0 chr11 26190353 26190378 -95653478 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 784 183 222 0 0 chr11 26190869 26190914 -95652942 + (CACG)n Simple_repeat Simple_repeat 2 46 0 2 784 193 274 93 23 chr11 26191845 26191931 -95651925 + L2c LINE L2 3250 3341 -46 2 784 423 0 0 0 chr11 26193668 26193715 -95650141 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 784 315 0 0 0 chr11 26193715 26193749 -95650107 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 784 441 0 0 0 chr11 26194431 26194480 -95649376 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 2 784 565 230 47 16 chr11 26194482 26194610 -95649246 - B1_Mur2 SINE Alu -1 148 17 2 784 1633 26 5 0 chr11 26194628 26194819 -95649037 + B2_Mm1a SINE B2 2 193 0 2 784 180 0 0 0 chr11 26195256 26195276 -95648580 + (T)n Simple_repeat Simple_repeat 1 20 0 2 784 1693 45 2 10 chr11 26195409 26195645 -95648211 - ORR1A0 LTR MaLR 0 367 137 2 784 25 0 0 0 chr11 26195871 26195896 -95647960 + AT_rich Low_complexity Low_complexity 1 25 0 2 784 262 225 43 43 chr11 26196666 26196759 -95647097 + L1MB1 LINE L1 6067 6159 -30 2 784 679 135 0 0 chr11 26196784 26196888 -95646968 + MERVL_2A-int LTR ERVL 3449 3552 -2209 2 784 2755 206 71 31 chr11 26196897 26197549 -95646307 - RMER1B Other Other -9 1057 380 2 784 1893 201 15 35 chr11 26197549 26197951 -95645905 + MERVL_2A-int LTR ERVL 3564 3957 -1804 2 784 1752 153 10 7 chr11 26198357 26198666 -95645190 + MERVL_2A-int LTR ERVL 3950 4259 -1502 2 784 1086 249 95 77 chr11 26198742 26199313 -95644543 + Lx8 LINE L1 6889 7469 -4 2 784 887 85 0 8 chr11 26199551 26199682 -95644174 + (TCTCCC)n Simple_repeat Simple_repeat 3 132 0 2 784 405 302 162 16 chr11 26199727 26199912 -95643944 - B4 SINE B4 0 292 81 2 784 210 133 0 43 chr11 26199914 26199961 -95643895 + T-rich Low_complexity Low_complexity 2 46 0 2 784 2663 29 0 0 chr11 26199965 26200280 -95643576 - L1Md_A LINE L1 0 6582 6268 2 784 272 306 0 12 chr11 26200286 26200372 -95643484 - B4A SINE B4 -204 88 4 2 784 21 36 0 0 chr11 26200385 26200413 -95643443 + AT_rich Low_complexity Low_complexity 1 28 0 2 784 358 272 12 36 chr11 26201432 26201516 -95642340 + ID SINE ID 3 84 -140 2 784 260 330 11 42 chr11 26201516 26201527 -95642329 + BC1_Mm scRNA scRNA 3 94 -58 2 784 12263 74 0 1 chr11 26201985 26203695 -95640161 - L1_Mm LINE L1 -918 4965 3258 2 784 3600 63 1 151 chr11 26203693 26203989 -95639867 + L1_Mm LINE L1 5017 5301 -582 2 784 290 216 0 75 chr11 26203989 26204000 -95639856 + ID_B1 SINE B4 151 222 0 2 784 504 60 0 0 chr11 26204000 26204067 -95639789 + B1_Mm SINE Alu 81 147 0 2 784 3600 63 1 151 chr11 26204069 26204363 -95639493 + L1_Mm LINE L1 5302 5586 -297 2 784 7227 78 12 4 chr11 26204363 26205429 -95638427 + L1Md_F2 LINE L1 5587 6582 0 2 784 189 0 0 0 chr11 26206040 26206061 -95637795 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 784 229 217 0 0 chr11 26206440 26206486 -95637370 + CT-rich Low_complexity Low_complexity 1 46 0 2 784 398 292 35 26 chr11 26206488 26206604 -95637252 - ID_B1 SINE B4 -9 215 99 2 784 248 271 71 20 chr11 26206796 26206894 -95636962 + PB1D7 SINE Alu 3 105 -15 2 784 895 270 103 58 chr11 26209044 26209200 -95634656 - ORR1E LTR MaLR -8 351 184 2 784 685 50 30 10 chr11 26209200 26209301 -95634555 + (GGGGA)n Simple_repeat Simple_repeat 2 104 0 2 784 895 270 103 58 chr11 26209301 26209474 -95634382 - ORR1E LTR MaLR -176 183 7 2 784 2462 76 0 0 chr11 26209645 26210025 -95633831 - Lx LINE L1 -718 5920 5541 2 784 4108 114 68 25 chr11 26210025 26210720 -95633136 + Lx LINE L1 5927 6651 -3 2 784 453 19 0 0 chr11 26210986 26211040 -95632816 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 784 23 33 0 0 chr11 26211696 26211726 -95632130 + AT_rich Low_complexity Low_complexity 1 30 0 2 784 275 284 0 33 chr11 26212685 26212776 -95631080 + (TATG)n Simple_repeat Simple_repeat 3 90 0 2 784 566 296 84 26 chr11 26212832 26213023 -95630833 - B3 SINE B2 -13 203 2 2 784 581 351 40 24 chr11 26213023 26213253 -95630603 - B4A SINE B4 -58 234 1 2 784 2177 108 3 61 chr11 26213783 26214129 -95629727 - ORR1A3 LTR MaLR 0 326 1 2 785 270 143 0 0 chr11 26216024 26216073 -95627783 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 785 480 299 37 16 chr11 26216706 26216893 -95626963 - B3A SINE B2 -6 192 2 2 785 3020 82 9 0 chr11 26217168 26217594 -95626262 - L1_Mus1 LINE L1 -259 6308 5879 2 785 1534 49 59 0 chr11 26217594 26217798 -95626058 + L1_Mus1 LINE L1 6351 6566 -1 2 785 248 326 106 21 chr11 26218957 26219145 -95624711 + MIRc SINE MIR 63 266 -2 2 785 532 275 122 30 chr11 26219152 26219858 -95623998 + L1M4 LINE L1 4806 5616 -558 2 785 250 303 31 82 chr11 26219860 26219957 -95623899 + ORR1E LTR MaLR 1 92 -287 2 785 262 336 41 111 chr11 26220021 26220265 -95623591 + ORR1E LTR MaLR 90 316 -43 2 785 267 303 72 28 chr11 26220342 26220522 -95623334 + L1M4 LINE L1 5652 5839 -345 2 785 535 354 124 33 chr11 26221368 26222007 -95621849 - L3 LINE CR1 -1 4488 3792 2 785 39 22 0 0 chr11 26222807 26222853 -95621003 + AT_rich Low_complexity Low_complexity 1 46 0 3 785 21 36 0 0 chr11 26224075 26224103 -95619753 + AT_rich Low_complexity Low_complexity 1 28 0 3 785 214 264 32 16 chr11 26226843 26226966 -95616890 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 785 237 139 0 0 chr11 26227077 26227120 -95616736 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 785 1924 194 51 5 chr11 26227312 26227705 -95616151 - MTD LTR MaLR -8 411 1 3 785 1411 269 15 6 chr11 26227744 26228077 -95615779 + ORR1D2 LTR MaLR 35 370 0 3 785 252 86 0 0 chr11 26228210 26228245 -95615611 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 785 1089 68 0 14 chr11 26230634 26230782 -95613074 + B1_Mus2 SINE Alu 1 146 -1 3 785 294 29 0 0 chr11 26231028 26231063 -95612793 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 785 288 0 0 0 chr11 26231064 26231096 -95612760 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 785 311 243 30 17 chr11 26231765 26231843 -95612013 + B1_Mur2 SINE Alu 28 105 -15 3 785 447 312 25 80 chr11 26232057 26232343 -95611513 - B4A SINE B4 -18 274 5 3 785 189 0 0 0 chr11 26232348 26232369 -95611487 + (T)n Simple_repeat Simple_repeat 1 21 0 3 785 269 365 56 0 chr11 26233371 26233497 -95610359 - MER65D LTR ERV1 -340 133 1 3 785 21 36 0 0 chr11 26234741 26234769 -95609087 + AT_rich Low_complexity Low_complexity 1 28 0 3 785 584 103 46 0 chr11 26235560 26235647 -95608209 - RMER6C LTR ERVK -599 91 1 3 785 1688 268 54 21 chr11 26235762 26236246 -95607610 + RLTR16 LTR ERVK 6 505 0 3 785 794 168 84 0 chr11 26236280 26236423 -95607433 + ORR1C2 LTR MaLR 39 193 -191 3 785 219 146 0 0 chr11 26236428 26236469 -95607387 + (TCTCCC)n Simple_repeat Simple_repeat 5 45 0 3 785 1141 171 0 54 chr11 26236473 26236696 -95607160 + ORR1C2 LTR MaLR 174 384 0 3 785 536 304 30 36 chr11 26237218 26237385 -95606471 - B3A SINE B2 -26 172 7 3 785 1024 171 0 0 chr11 26237539 26237703 -95606153 - U1 snRNA snRNA -1 164 1 3 785 354 295 0 4 chr11 26238051 26238159 -95605697 - MTE2a LTR MaLR -268 111 6 3 785 333 47 0 0 chr11 26238192 26238235 -95605621 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 785 376 231 26 0 chr11 26238281 26238359 -95605497 + ORR1D2 LTR MaLR 4 83 -287 3 785 1193 276 96 3 chr11 26238494 26238828 -95605028 - ORR1D2 LTR MaLR -2 368 4 3 785 1287 259 40 16 chr11 26238932 26239297 -95604559 + MTE2b LTR MaLR 3 374 0 3 785 183 163 0 65 chr11 26240661 26240707 -95603149 + L2 LINE L2 641 683 -2736 3 785 243 0 0 0 chr11 26240783 26240810 -95603046 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 3 785 208 105 0 50 chr11 26241006 26241046 -95602810 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 3 785 316 330 128 10 chr11 26241291 26241487 -95602369 + MIR SINE MIR 23 241 -21 3 785 246 264 79 22 chr11 26241502 26241591 -95602265 - MTEa LTR MaLR -8 371 278 3 785 198 385 26 0 chr11 26241879 26241957 -95601899 - MIRm SINE MIR -4 272 193 3 785 202 261 30 30 chr11 26246338 26246405 -95597451 - L2a LINE L2 -85 3341 3275 3 785 3876 259 76 26 chr11 26246410 26247042 -95596814 - MMAR1 DNA Mariner -2 1284 621 3 785 5222 63 1 124 chr11 26247042 26247906 -95595950 + L1_Mus4 LINE L1 5879 6636 0 3 785 3876 259 76 26 chr11 26247906 26248413 -95595443 - MMAR1 DNA Mariner -666 620 88 3 785 8383 150 22 32 chr11 26248413 26250208 -95593648 + Lx2 LINE L1 5239 6996 -1 3 785 527 324 7 40 chr11 26250335 26250358 -95593498 + RSINE1 SINE B4 4 25 -140 3 785 3466 18 5 0 chr11 26250358 26250752 -95593104 + MTA_Mm LTR MaLR 1 396 0 3 785 527 324 7 40 chr11 26250752 26250879 -95592977 + RSINE1 SINE B4 26 149 -16 3 785 23 33 0 0 chr11 26250920 26250950 -95592906 + AT_rich Low_complexity Low_complexity 1 30 0 3 785 231 157 0 0 chr11 26251083 26251134 -95592722 + A-rich Low_complexity Low_complexity 1 51 0 3 785 324 388 50 36 chr11 26251520 26251742 -95592114 + MT2A LTR ERVL 173 397 -136 3 785 428 286 0 0 chr11 26251857 26252011 -95591845 + (CA)n Simple_repeat Simple_repeat 1 154 0 3 785 244 200 0 0 chr11 26252014 26252084 -95591772 + MT2A LTR ERVL 464 533 0 3 785 24 32 0 0 chr11 26252456 26252487 -95591369 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 340 336 29 0 chr11 26252976 26253080 -95590776 - PB1D10 SINE Alu 0 117 11 3 785 227 79 29 100 chr11 26253270 26253340 -95590516 + (TTAAA)n Simple_repeat Simple_repeat 1 65 0 3 785 237 33 0 0 chr11 26254345 26254375 -95589481 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 3 785 263 218 57 106 chr11 26254375 26254498 -95589358 - BC1_Mm scRNA scRNA -23 129 13 3 785 422 283 33 0 chr11 26254922 26255014 -95588842 - B1_Mur1 SINE Alu -8 141 47 3 785 614 279 103 0 chr11 26255170 26255335 -95588521 + B3A SINE B2 1 182 -16 3 785 180 182 0 0 chr11 26255336 26255380 -95588476 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 785 744 263 14 40 chr11 26256198 26256420 -95587436 + B3 SINE B2 1 216 0 3 785 479 352 34 19 chr11 26257216 26257537 -95586319 - ERVL-E-int LTR ERVL -4014 1653 1328 3 785 209 339 57 62 chr11 26257874 26258050 -95585806 + MER5B DNA MER1_type 4 178 0 3 785 369 362 79 5 chr11 26258350 26258539 -95585317 - MER20 DNA MER1_type -1 218 16 3 785 613 244 34 0 chr11 26258576 26258695 -95585161 - B1_Mur1 SINE Alu -16 133 11 3 785 8598 56 1 3 chr11 26258695 26259780 -95584076 + L1Md_F2 LINE L1 4504 5586 -297 3 785 7874 55 2 5 chr11 26259780 26260777 -95583079 + L1Md_F2 LINE L1 5587 6580 -2 3 785 182 346 37 12 chr11 26261427 26261509 -95582347 - L2 LINE L2 -1061 2358 2275 3 785 1389 82 6 0 chr11 26261710 26261892 -95581964 + B2_Mm1t SINE B2 2 184 -9 3 785 397 133 28 37 chr11 26262130 26262239 -95581617 + (TCTA)n Simple_repeat Simple_repeat 4 111 0 3 785 1246 275 83 16 chr11 26262389 26262762 -95581094 + MTD LTR MaLR 8 405 -14 3 785 6941 75 46 2 chr11 26263027 26264044 -95579812 - L1Md_F2 LINE L1 -12 6570 5510 3 785 23094 88 11 8 chr11 26264052 26267491 -95576365 - L1Md_F2 LINE L1 -1357 4526 1074 3 785 7415 78 13 6 chr11 26267486 26268506 -95575350 - L1Md_F2 LINE L1 -1 6581 5587 3 785 5754 106 31 3 chr11 26268506 26269419 -95574437 - L1Md_F LINE L1 -5413 1311 371 3 785 352 311 112 21 chr11 26269546 26269733 -95574123 + MLT1I LTR MaLR 6 209 -202 3 785 234 256 54 0 chr11 26269795 26269877 -95573979 + MLT1I LTR MaLR 295 425 -23 3 785 3706 67 102 6 chr11 26269973 26270484 -95573372 - LTRIS2 LTR ERV1 0 564 5 3 785 39 60 0 0 chr11 26271320 26271387 -95572469 + AT_rich Low_complexity Low_complexity 1 67 0 3 785 922 289 75 58 chr11 26271404 26271816 -95572040 - Lx8 LINE L1 -7 7466 7048 3 785 2619 108 60 16 chr11 26271824 26272126 -95571730 - RLTR9B LTR ERVK -45 392 106 3 785 207 0 0 0 chr11 26272126 26272149 -95571707 + (CAG)n Simple_repeat Simple_repeat 2 24 0 3 785 2619 84 62 0 chr11 26272149 26272257 -95571599 - RLTR9B LTR ERVK -318 119 3 3 785 769 299 54 34 chr11 26272260 26272554 -95571302 - Lx8 LINE L1 -496 6977 6678 3 785 1847 168 78 24 chr11 26273161 26273266 -95570590 - ORR1B1 LTR MaLR -1 393 295 3 785 4853 143 148 15 chr11 26273266 26274178 -95569678 + RLTR13D4 LTR ERVK 1 1033 0 3 785 1847 168 78 24 chr11 26274178 26274445 -95569411 - ORR1B1 LTR MaLR -100 294 1 3 785 3230 94 19 70 chr11 26275441 26275981 -95567875 + RLTR1B LTR ERV1 1 512 0 3 785 722 185 0 30 chr11 26276766 26276900 -95566956 + B3 SINE B2 1 130 -86 3 785 21 36 0 0 chr11 26277119 26277147 -95566709 + AT_rich Low_complexity Low_complexity 1 28 0 3 785 21 57 0 0 chr11 26277198 26277233 -95566623 + AT_rich Low_complexity Low_complexity 1 35 0 3 785 22 99 0 0 chr11 26277920 26277991 -95565865 + AT_rich Low_complexity Low_complexity 1 71 0 3 785 562 168 28 28 chr11 26278575 26278753 -95565103 + CT-rich Low_complexity Low_complexity 2 179 0 3 785 417 123 0 0 chr11 26278937 26279002 -95564854 + (TCC)n Simple_repeat Simple_repeat 3 67 0 3 785 294 29 0 0 chr11 26279256 26279291 -95564565 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 785 262 273 15 0 chr11 26279774 26279840 -95564016 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 785 958 67 90 0 chr11 26280253 26280387 -95563469 + B1_Mus2 SINE Alu 1 146 -1 3 785 548 53 13 0 chr11 26282323 26282399 -95561457 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 785 4253 55 2 2 chr11 26282595 26283123 -95560733 + L1_Mus2 LINE L1 6039 6566 0 3 785 412 279 0 18 chr11 26283585 26283698 -95560158 + MLT1A0 LTR MaLR 255 365 0 3 785 251 312 43 11 chr11 26284024 26284118 -95559738 - MER5A DNA MER1_type -13 176 80 3 785 365 0 0 22 chr11 26285038 26285084 -95558772 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 3 785 225 0 0 0 chr11 26285445 26285470 -95558386 + (T)n Simple_repeat Simple_repeat 1 25 0 3 785 604 263 180 19 chr11 26285752 26285997 -95557859 + RMER21B LTR ERV1 302 618 -329 3 785 260 267 0 85 chr11 26286006 26286088 -95557768 + RMER21B LTR ERV1 761 835 -112 3 785 198 0 0 0 chr11 26286112 26286134 -95557722 + (T)n Simple_repeat Simple_repeat 1 22 0 3 785 463 149 11 33 chr11 26286194 26286284 -95557572 + URR1B DNA MER1_type 83 170 -55 3 785 24 0 0 0 chr11 26287757 26287781 -95556075 + GC_rich Low_complexity Low_complexity 1 24 0 3 785 396 0 0 0 chr11 26288167 26288211 -95555645 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 785 306 324 9 35 chr11 26288526 26288641 -95555215 - L1MC4 LINE L1 -153 7889 7778 3 785 241 346 100 6 chr11 26288759 26288919 -95554937 - L1MC4 LINE L1 -531 7511 7337 3 785 279 0 0 0 chr11 26288986 26289017 -95554839 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 3 785 2049 194 69 43 chr11 26289051 26289557 -95554299 - Lx5 LINE L1 0 7050 6532 3 785 3326 84 6 15 chr11 26290174 26290646 -95553210 - L1_Mus3 LINE L1 0 6638 6171 3 785 8847 104 26 2 chr11 26290646 26292079 -95551777 - MusHAL1 LINE L1 -360 2352 885 3 785 369 43 0 0 chr11 26292122 26292169 -95551687 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 785 443 331 14 7 chr11 26292172 26292315 -95551541 - B4A SINE B4 -21 271 128 3 785 289 310 0 12 chr11 26292329 26292414 -95551442 - B4 SINE B4 -208 84 1 3 785 353 245 118 0 chr11 26292497 26292599 -95551257 - MLT1F LTR MaLR -49 499 386 3 785 21 36 0 0 chr11 26292982 26293010 -95550846 + AT_rich Low_complexity Low_complexity 1 28 0 4 785 300 308 95 7 chr11 26293040 26293187 -95550669 - RSINE1 SINE B4 -4 161 2 4 785 1184 68 0 0 chr11 26293375 26293522 -95550334 - B1_Mus2 SINE Alu 0 147 1 4 785 7456 58 7 3 chr11 26293643 26295185 -95548671 - L1Md_F2 LINE L1 -11 6571 5026 4 785 304 253 13 0 chr11 26295460 26295535 -95548321 - L1MC4 LINE L1 -5505 710 635 4 785 273 321 46 28 chr11 26295703 26295812 -95548044 - PB1D7 SINE Alu 0 120 10 4 785 26 64 0 0 chr11 26296873 26296920 -95546936 + AT_rich Low_complexity Low_complexity 1 47 0 4 785 267 378 0 8 chr11 26296961 26297081 -95546775 + (TATG)n Simple_repeat Simple_repeat 1 119 0 4 785 223 273 102 83 chr11 26297182 26297290 -95546566 - B3A SINE B2 -87 111 2 4 785 315 0 0 0 chr11 26297573 26297608 -95546248 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 785 225 0 0 0 chr11 26298724 26298749 -95545107 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4 785 597 149 65 0 chr11 26298756 26298879 -95544977 - B1_Mur1 SINE Alu -7 142 12 4 785 207 0 0 0 chr11 26298886 26298909 -95544947 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 785 784 282 45 0 chr11 26298912 26299114 -95544742 - B3 SINE B2 -5 211 1 4 785 937 164 16 2 chr11 26300656 26300731 -95543125 + C-rich Low_complexity Low_complexity 1 76 0 4 785 306 0 0 0 chr11 26300731 26300765 -95543091 + (TCTCG)n Simple_repeat Simple_repeat 1 34 0 4 785 937 147 6 6 chr11 26300765 26300916 -95542940 + C-rich Low_complexity Low_complexity 2 151 0 4 785 5716 106 43 16 chr11 26301012 26301894 -95541962 + RMER17A2 LTR ERVK 1 906 0 4 785 25 0 0 0 chr11 26302564 26302589 -95541267 + AT_rich Low_complexity Low_complexity 1 25 0 4 785 1385 194 137 25 chr11 26302787 26303152 -95540704 + MTD LTR MaLR 2 407 -12 4 785 521 328 43 22 chr11 26303469 26303653 -95540203 - B4A SINE B4 0 292 105 4 785 381 327 19 25 chr11 26303974 26304134 -95539722 + RSINE1 SINE B4 2 160 -5 4 785 354 267 88 85 chr11 26305175 26305527 -95538329 - L1MC5 LINE L1 -855 7106 6754 4 785 310 332 80 69 chr11 26305807 26306095 -95537761 - ORR1D1 LTR MaLR 0 374 84 4 785 265 246 16 0 chr11 26306157 26306218 -95537638 - ORR1D1 LTR MaLR -297 62 1 4 785 263 283 39 98 chr11 26308446 26308548 -95535308 + MT2B LTR ERVL 152 247 -354 4 785 569 202 10 0 chr11 26308467 26308566 -95535290 + PB1D9 SINE Alu 13 112 -8 4 785 297 301 0 0 chr11 26308572 26308645 -95535211 + GA-rich Low_complexity Low_complexity 1 73 0 4 785 412 55 0 0 chr11 26309135 26309190 -95534666 - B1_Mur4 SINE Alu 0 150 96 4 785 3306 91 2 4 chr11 26309833 26310328 -95533528 + L1_Mm LINE L1 4929 5422 -461 4 785 227 157 20 0 chr11 26310597 26310648 -95533208 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 785 208 24 0 128 chr11 26310926 26310960 -95532896 + T-rich Low_complexity Low_complexity 14 42 0 4 785 1081 102 0 0 chr11 26310960 26311107 -95532749 - B1_Mus2 SINE Alu 0 147 1 4 785 208 24 0 128 chr11 26311107 26311119 -95532737 + T-rich Low_complexity Low_complexity 2 13 0 4 785 353 22 22 0 chr11 26311980 26312026 -95531830 + (TCC)n Simple_repeat Simple_repeat 1 47 0 4 785 267 114 0 0 chr11 26312026 26312070 -95531786 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 4 785 225 0 0 0 chr11 26312070 26312095 -95531761 + (T)n Simple_repeat Simple_repeat 1 25 0 4 785 2654 98 44 5 chr11 26312272 26312662 -95531194 - Lx3_Mus LINE L1 -1 7008 6604 4 785 225 210 31 31 chr11 26313699 26313763 -95530093 + CT-rich Low_complexity Low_complexity 5 68 0 4 785 22 0 0 0 chr11 26314971 26314993 -95528863 + AT_rich Low_complexity Low_complexity 1 22 0 4 785 2526 211 138 63 chr11 26315222 26316239 -95527617 - RMER1B Other Other -1 1065 115 4 785 181 280 58 108 chr11 26316448 26316568 -95527288 - L2c LINE L2 -85 3302 3189 4 785 575 53 0 0 chr11 26316740 26316815 -95527041 + B2_Mm1t SINE B2 2 76 -117 4 785 29 0 0 0 chr11 26317747 26317776 -95526080 + AT_rich Low_complexity Low_complexity 1 29 0 4 785 4624 81 10 0 chr11 26317784 26318388 -95525468 - Lx3_Mus LINE L1 -17 6992 6383 4 785 353 317 24 32 chr11 26318395 26318519 -95525337 - B1_Mus1 SINE Alu -25 123 1 4 785 1166 236 190 40 chr11 26319444 26319644 -95524212 - MTD LTR MaLR 0 419 174 4 785 1082 163 103 0 chr11 26319644 26319847 -95524009 - URR1B DNA MER1_type -1 224 1 4 785 1166 236 190 40 chr11 26319847 26319994 -95523862 - MTD LTR MaLR -246 173 20 4 785 243 0 0 0 chr11 26321129 26321156 -95522700 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 785 1117 56 21 0 chr11 26321161 26321305 -95522551 - B1_Mus2 SINE Alu 0 147 1 4 785 252 0 0 0 chr11 26322851 26322879 -95520977 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 785 330 115 0 0 chr11 26324451 26324503 -95519353 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 4 785 347 338 29 0 chr11 26324795 26324931 -95518925 - B1F2 SINE Alu -5 144 5 4 785 417 281 0 99 chr11 26325228 26325370 -95518486 + B1F SINE Alu 22 149 0 4 785 216 0 0 0 chr11 26325409 26325433 -95518423 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 785 573 55 0 0 chr11 26325998 26326071 -95517785 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 4 785 527 243 83 7 chr11 26326094 26326239 -95517617 - RSINE1 SINE B4 -2 163 8 4 785 33858 35 1 0 chr11 26326531 26332362 -95511494 + L1Md_T LINE L1 1 5589 -297 4 785 9056 4 0 0 chr11 26332362 26333387 -95510469 + L1Md_T LINE L1 5590 6585 0 4 785 27 0 0 0 chr11 26333637 26333664 -95510192 + AT_rich Low_complexity Low_complexity 1 27 0 4 785 201 154 0 0 chr11 26333829 26333868 -95509988 + T-rich Low_complexity Low_complexity 1 39 0 4 785 492 128 0 0 chr11 26334218 26334296 -95509560 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 785 411 21 0 0 chr11 26334573 26334621 -95509235 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 785 336 198 97 62 chr11 26335348 26335461 -95508395 - RSINE1 SINE B4 -46 119 3 4 785 893 182 0 0 chr11 26335671 26335819 -95508037 + B1_Mur4 SINE Alu 2 149 -1 4 785 714 159 0 0 chr11 26337400 26337526 -95506330 + CT-rich Low_complexity Low_complexity 4 129 0 4 785 226 243 14 0 chr11 26338604 26338678 -95505178 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 4 785 1126 122 10 69 chr11 26338913 26339085 -95504771 + B2_Mm2 SINE B2 2 169 -26 4 785 284 0 28 0 chr11 26339085 26339121 -95504735 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 785 1126 122 10 69 chr11 26339121 26339151 -95504705 + B2_Mm2 SINE B2 170 192 -3 4 785 266 280 0 39 chr11 26340222 26340300 -95503556 + G-rich Low_complexity Low_complexity 1 75 0 4 785 232 234 93 49 chr11 26340651 26340813 -95503043 - HAL1 LINE L1 -315 2192 2024 4 785 234 156 0 0 chr11 26340835 26340880 -95502976 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 4 785 643 368 72 4 chr11 26341214 26341414 -95502442 + B4A SINE B4 9 217 -75 4 785 432 0 0 0 chr11 26341414 26341462 -95502394 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 785 643 368 72 4 chr11 26341462 26341523 -95502333 + B4A SINE B4 218 287 -5 4 785 203 189 0 0 chr11 26342153 26342190 -95501666 + A-rich Low_complexity Low_complexity 1 37 0 4 785 268 205 113 16 chr11 26342873 26342997 -95500859 - L1M4 LINE L1 -299 5880 5745 4 785 433 257 224 26 chr11 26343025 26343253 -95500603 + B4 SINE B4 3 275 -17 4 785 234 197 65 13 chr11 26343320 26343397 -95500459 - Lx9 LINE L1 -1 7643 7563 4 785 932 272 86 9 chr11 26343409 26343747 -95500109 - Lx9 LINE L1 -226 7418 7055 4 785 393 288 38 0 chr11 26343802 26343934 -95499922 - L1M4 LINE L1 -470 5708 5572 4 785 4163 168 64 34 chr11 26343957 26344812 -95499044 - Lx5 LINE L1 -2 7048 6168 4 785 2143 151 18 18 chr11 26344859 26345258 -95498598 - L1_Mur2 LINE L1 -6 5871 5473 4 785 281 229 33 0 chr11 26345259 26345320 -95498536 - RLTR31_Mur LTR ERVK 0 553 491 4 98 953 299 84 22 chr11 26345397 26345822 -95498034 - RLTR17 LTR ERVK -160 532 102 4 786 3337 128 38 7 chr11 26345829 26346433 -95497423 - L1_Mur2 LINE L1 -395 5482 4860 4 786 1042 147 86 9 chr11 26346433 26346653 -95497203 + L1_Mur2 LINE L1 3161 3397 -2480 4 786 324 286 65 19 chr11 26346653 26346760 -95497096 - RLTR23 LTR ERV1 0 430 319 4 786 308 239 22 22 chr11 26346807 26346897 -95496959 + RLTR22_Mus LTR ERVK 422 511 -1297 4 786 281 269 25 13 chr11 26346917 26346996 -95496860 + RLTR22_Mur LTR ERVK 1628 1707 -141 4 786 2646 152 44 44 chr11 26347059 26347128 -95496728 + L1_Mur2 LINE L1 3393 3461 -2416 4 786 1213 61 0 0 chr11 26347128 26347275 -95496581 + B1_Mm SINE Alu 1 147 0 4 786 2646 152 44 44 chr11 26347275 26347775 -95496081 + L1_Mur2 LINE L1 3462 3962 -1915 4 786 741 181 6 6 chr11 26347792 26347948 -95495908 + L1_Mur3 LINE L1 3725 3880 -2000 4 786 377 40 60 0 chr11 26347952 26348002 -95495854 + MTC LTR MaLR 367 419 -2 4 786 305 273 18 26 chr11 26348488 26348601 -95495255 - PB1D10 SINE Alu -5 112 1 4 786 21 0 0 0 chr11 26348721 26348742 -95495114 + AT_rich Low_complexity Low_complexity 1 21 0 4 786 225 146 0 0 chr11 26348883 26348931 -95494925 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 786 1371 176 142 42 chr11 26349928 26350260 -95493596 + ORR1B2 LTR MaLR 3 367 0 4 786 257 0 30 0 chr11 26350447 26350480 -95493376 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 4 786 428 274 67 42 chr11 26350731 26351020 -95492836 - L1_Mur3 LINE L1 -1536 4604 4347 4 786 1661 254 62 8 chr11 26351215 26351683 -95492173 - RLTR16 LTR ERVK -12 493 1 4 786 369 278 95 24 chr11 26351702 26351912 -95491944 - L1_Mur3 LINE L1 -1828 4315 4091 4 786 1061 310 83 37 chr11 26351921 26352736 -95491120 + L1_Rod LINE L1 4868 5720 -127 4 786 633 257 323 13 chr11 26352951 26353251 -95490605 - MTD LTR MaLR -16 403 11 4 786 1768 233 110 112 chr11 26353262 26354255 -95489601 - RMER17B LTR ERVK -9 899 1 4 786 1444 286 78 43 chr11 26354278 26355380 -95488476 - ORR1D2-int LTR MaLR -6 1252 1 4 786 345 250 21 32 chr11 26355380 26355518 -95488338 - ORR1D2 LTR MaLR 0 379 241 4 786 1588 45 55 0 chr11 26355534 26355754 -95488102 - L1_Mus1 LINE L1 -493 6074 5843 4 786 2336 58 19 0 chr11 26355775 26356084 -95487772 - L1_Mus1 LINE L1 -666 5901 5587 5 786 3841 74 2 0 chr11 26356098 26356585 -95487271 + L1_Mus1 LINE L1 6079 6566 -1 5 786 591 297 98 5 chr11 26356724 26356927 -95486929 + RLTR18B LTR ERVK 120 341 -171 5 786 588 190 0 0 chr11 26356932 26357032 -95486824 - RLTR18B LTR ERVK -77 435 336 5 786 260 263 102 34 chr11 26357183 26357360 -95486496 - L1M5 LINE L1 -716 5728 5540 5 786 1125 55 7 7 chr11 26358410 26358556 -95485300 + B1_Mus2 SINE Alu 2 147 0 5 786 1568 43 0 0 chr11 26358670 26358857 -95484999 + B2_Mm1a SINE B2 1 187 -6 5 786 335 231 26 0 chr11 26359090 26359168 -95484688 + ID4 SINE ID 3 82 -1 5 786 369 62 0 0 chr11 26359377 26359425 -95484431 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 786 22 56 0 0 chr11 26359873 26359909 -95483947 + AT_rich Low_complexity Low_complexity 1 36 0 5 786 24 0 0 0 chr11 26360448 26360472 -95483384 + AT_rich Low_complexity Low_complexity 1 24 0 5 786 207 0 0 0 chr11 26360524 26360547 -95483309 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5 786 37420 32 3 7 chr11 26361459 26367841 -95476015 - L1Md_T LINE L1 -1 6581 232 5 786 22 35 0 0 chr11 26368487 26368516 -95475340 + AT_rich Low_complexity Low_complexity 1 29 0 5 786 195 42 0 0 chr11 26368772 26368796 -95475060 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 786 251 279 63 63 chr11 26372246 26372284 -95471572 + MT2B LTR ERVL 129 166 -435 5 786 420 304 72 7 chr11 26372284 26372423 -95471433 + B1F2 SINE Alu 2 149 0 5 786 380 317 81 0 chr11 26372772 26372895 -95470961 + MER58A DNA MER1_type 85 217 -7 5 786 396 358 39 13 chr11 26373148 26373301 -95470555 + MER20 DNA MER1_type 4 160 -59 5 786 459 107 0 0 chr11 26373873 26373948 -95469908 + (TATG)n Simple_repeat Simple_repeat 4 78 0 5 786 21 0 0 0 chr11 26374288 26374309 -95469547 + AT_rich Low_complexity Low_complexity 1 21 0 5 786 354 279 120 24 chr11 26374928 26375053 -95468803 - RSINE1 SINE B4 0 165 29 5 786 313 250 98 0 chr11 26375243 26375335 -95468521 + L1ME1 LINE L1 5810 5910 -269 5 786 350 259 47 0 chr11 26375789 26375874 -95467982 + L4 LINE RTE 1761 1849 -180 5 786 485 275 98 34 chr11 26378057 26378321 -95465535 - L1MA9 LINE L1 -134 6178 5898 5 786 3337 45 0 0 chr11 26380346 26380765 -95463091 - L1Md_F2 LINE L1 -233 6349 5931 5 786 1458 119 0 25 chr11 26380766 26381007 -95462849 + L1Md_F2 LINE L1 6348 6582 0 5 786 226 209 0 0 chr11 26382189 26382232 -95461624 + (CATG)n Simple_repeat Simple_repeat 2 44 0 5 786 1186 99 16 5 chr11 26382426 26382618 -95461238 + L1_Mus3 LINE L1 6438 6631 -7 5 786 31 58 0 0 chr11 26383439 26383491 -95460365 + AT_rich Low_complexity Low_complexity 1 52 0 5 786 609 323 0 63 chr11 26384419 26384624 -95459232 - B3A SINE B2 -4 194 3 5 786 261 0 0 0 chr11 26385494 26385523 -95458333 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 786 2456 221 62 10 chr11 26387352 26387933 -95455923 - RLTR18 LTR ERVK 0 616 6 5 786 327 308 58 86 chr11 26388829 26388903 -95454953 + ID SINE ID 18 86 -138 5 786 467 241 37 0 chr11 26388903 26389011 -95454845 + PB1D10 SINE Alu 3 114 -3 5 786 2308 74 0 60 chr11 26391764 26392096 -95451760 - L1_Mus2 LINE L1 -2 6564 6253 5 786 853 260 56 5 chr11 26392418 26392615 -95451241 + B3 SINE B2 9 215 -1 5 786 351 0 0 0 chr11 26394671 26394710 -95449146 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 786 526 338 8 0 chr11 26394865 26394998 -95448858 + RSINE1 SINE B4 11 144 -21 5 786 212 250 27 14 chr11 26396572 26396645 -95447211 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 5 786 834 226 50 5 chr11 26397254 26397454 -95446402 + B3 SINE B2 2 210 -6 5 786 396 272 48 81 chr11 26399147 26399271 -95444585 + RSINE1 SINE B4 29 148 -17 5 786 420 20 0 0 chr11 26399274 26399323 -95444533 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 786 304 264 38 100 chr11 26399360 26399440 -95444416 + RSINE1 SINE B4 74 148 -17 5 786 495 0 0 0 chr11 26399443 26399498 -95444358 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 786 8778 89 7 11 chr11 26400506 26401708 -95442148 - L1_Mus2 LINE L1 0 6566 5364 5 786 1070 96 7 0 chr11 26401708 26401854 -95442002 + B1_Mus2 SINE Alu 1 147 0 5 786 8778 117 5 48 chr11 26401854 26402855 -95441001 - L1_Mus2 LINE L1 -520 5363 4427 5 786 29492 99 35 7 chr11 26402850 26405789 -95438067 - L1Md_F2 LINE L1 -1 6581 3539 5 786 1037 129 0 0 chr11 26405789 26405936 -95437920 + B1_Mm SINE Alu 1 147 0 5 786 29492 140 39 40 chr11 26405936 26409240 -95434616 - L1Md_F2 LINE L1 -2345 3538 261 5 786 1745 135 49 10 chr11 26409272 26409578 -95434278 + L1_Mm LINE L1 5488 5805 -78 5 786 1181 62 7 0 chr11 26409855 26410001 -95433855 - B1_Mus1 SINE Alu 0 148 2 5 786 22 0 0 0 chr11 26410351 26410373 -95433483 + AT_rich Low_complexity Low_complexity 1 22 0 5 786 225 340 57 43 chr11 26410487 26410696 -95433160 - MIRb SINE MIR -5 263 52 5 786 209 150 50 0 chr11 26410851 26410891 -95432965 + GA-rich Low_complexity Low_complexity 3 44 0 5 786 241 282 25 13 chr11 26411810 26411889 -95431967 + LTR16B LTR ERVL 382 461 -2 5 786 22 0 0 0 chr11 26412359 26412381 -95431475 + AT_rich Low_complexity Low_complexity 1 22 0 5 786 1105 30 61 0 chr11 26412389 26412554 -95431302 + (TCTCCC)n Simple_repeat Simple_repeat 4 178 0 5 786 181 398 29 10 chr11 26412873 26412977 -95430879 - MIRb SINE MIR -150 118 13 5 786 2196 204 92 25 chr11 26413392 26413914 -95429942 + RLTR20B3 LTR ERVK 21 577 0 5 786 332 369 66 24 chr11 26414302 26414513 -95429343 + MIR SINE MIR 17 236 -26 5 786 272 269 93 33 chr11 26414779 26414929 -95428927 - MLT1C LTR MaLR -308 159 1 5 786 234 0 0 0 chr11 26414990 26415016 -95428840 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 786 25 0 0 0 chr11 26415370 26415395 -95428461 + AT_rich Low_complexity Low_complexity 1 25 0 5 786 288 70 0 0 chr11 26416646 26416689 -95427167 + (T)n Simple_repeat Simple_repeat 1 43 0 5 786 25 31 0 0 chr11 26416744 26416776 -95427080 + AT_rich Low_complexity Low_complexity 1 32 0 5 786 459 314 122 40 chr11 26416943 26417295 -95426561 + L1MC4 LINE L1 1531 1911 -4304 5 786 2180 172 62 13 chr11 26417637 26418166 -95425690 + Lx6 LINE L1 1604 2158 -3722 5 786 2356 28 0 0 chr11 26418169 26418457 -95425399 - L1Md_F3 LINE L1 -224 6360 6073 5 786 1228 49 0 12 chr11 26418478 26418668 -95425188 + L1Md_F3 LINE L1 6412 6584 0 5 786 1192 122 23 18 chr11 26418670 26418888 -95424968 + Lx6 LINE L1 2159 2377 -3503 5 786 4178 154 101 75 chr11 26418888 26419737 -95424119 - RMER19B LTR ERVK 0 902 32 5 786 2174 42 0 0 chr11 26419783 26420045 -95423811 + L1Md_T LINE L1 6321 6582 0 5 786 3389 171 47 38 chr11 26420045 26420128 -95423728 + Lx6 LINE L1 2387 2463 -3417 5 786 230 0 0 32 chr11 26420128 26420159 -95423697 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 786 3389 171 47 38 chr11 26420159 26420972 -95422884 + Lx6 LINE L1 2464 3292 -2588 5 786 900 180 48 29 chr11 26421031 26421237 -95422619 + Lx6 LINE L1 4750 4959 -921 5 786 4568 181 32 30 chr11 26421479 26422153 -95421703 + L1_Mur2 LINE L1 836 1499 -4378 5 786 720 64 0 0 chr11 26422153 26422247 -95421609 + (GAA)n Simple_repeat Simple_repeat 3 96 0 5 786 4568 174 57 23 chr11 26422247 26422292 -95421564 + L1_Mur2 LINE L1 1500 1558 -4319 5 786 387 0 0 0 chr11 26422292 26422335 -95421521 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 786 4568 174 57 23 chr11 26422335 26423087 -95420769 + L1_Mur2 LINE L1 1559 2334 -3543 5 786 186 191 0 0 chr11 26423120 26423162 -95420694 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 5 786 7532 189 68 16 chr11 26423186 26423755 -95420101 + Lx6 LINE L1 4983 5604 -1856 5 786 2031 162 19 19 chr11 26423755 26424133 -95419723 - ORR1C1 LTR MaLR 0 378 1 5 786 7532 223 23 47 chr11 26424133 26426032 -95417824 + Lx6 LINE L1 5605 7458 -2 5 786 511 310 40 10 chr11 26426355 26426557 -95417299 + B3 SINE B2 5 212 -4 5 786 1166 91 45 0 chr11 26426714 26426890 -95416966 + B2_Mm1t SINE B2 10 193 0 5 786 697 281 28 14 chr11 26426926 26427139 -95416717 + B3 SINE B2 1 216 0 5 786 198 0 0 0 chr11 26427877 26427899 -95415957 + (A)n Simple_repeat Simple_repeat 1 22 0 5 786 5047 81 10 4 chr11 26428107 26428830 -95415026 + Lx3_Mus LINE L1 6142 6868 -141 5 786 2277 88 0 57 chr11 26428830 26429180 -95414676 + L1_Mus1 LINE L1 6238 6567 0 5 786 1020 96 0 0 chr11 26429190 26429336 -95414520 + (GAAAA)n Simple_repeat Simple_repeat 1 146 0 5 786 463 296 0 56 chr11 26429336 26429479 -95414377 + ID_B1 SINE B4 89 223 -1 5 786 2084 144 66 6 chr11 26429719 26430054 -95413802 - ORR1B2 LTR MaLR -8 359 5 5 786 435 345 47 28 chr11 26430659 26430874 -95412982 + L1MD LINE L1 2593 2811 -3335 5 786 533 276 114 5 chr11 26430894 26431087 -95412769 + B3 SINE B2 2 215 -1 5 786 668 269 54 0 chr11 26431158 26431325 -95412531 + B3A SINE B2 1 176 -22 5 786 395 232 73 53 chr11 26431334 26431484 -95412372 + L1MC LINE L1 2801 2953 -3193 5 786 306 300 45 34 chr11 26431582 26431758 -95412098 + L1MD LINE L1 4602 4779 -1367 5 786 544 318 111 29 chr11 26431892 26432271 -95411585 + L1MD LINE L1 5319 5728 -451 5 786 335 253 16 0 chr11 26432279 26432368 -95411488 + B3 SINE B2 1 92 -103 5 786 189 0 0 0 chr11 26433118 26433139 -95410717 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 5 786 382 300 157 8 chr11 26433244 26433627 -95410229 - L1MC1 LINE L1 -242 6091 5652 5 786 238 293 12 0 chr11 26433959 26434044 -95409812 + MIRc SINE MIR 49 137 -131 5 786 1051 281 11 15 chr11 26434444 26434704 -95409152 + MTE2b LTR MaLR 120 378 -1 5 786 186 71 0 0 chr11 26436025 26436053 -95407803 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 786 1037 70 7 0 chr11 26436697 26436840 -95407016 + (CA)n Simple_repeat Simple_repeat 2 145 0 5 786 448 277 97 2 chr11 26436874 26437091 -95406765 - L1MA5 LINE L1 -376 5924 5623 5 786 4310 151 87 43 chr11 26437103 26437514 -95406342 + RMER17B LTR ERVK 2 399 -559 5 786 880 35 17 0 chr11 26437514 26437630 -95406226 + (TC)n Simple_repeat Simple_repeat 2 119 0 5 786 4310 151 87 43 chr11 26437630 26438130 -95405726 + RMER17B LTR ERVK 400 952 -6 5 786 242 120 20 0 chr11 26438272 26438295 -95405561 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 786 261 0 0 0 chr11 26438295 26438324 -95405532 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 786 242 120 20 0 chr11 26438324 26438350 -95405506 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 786 2614 133 31 52 chr11 26438350 26438832 -95405024 - Lx LINE L1 -16 6638 6167 6 786 396 0 0 0 chr11 26438917 26438961 -95404895 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 786 444 330 11 27 chr11 26439063 26439247 -95404609 - B3A SINE B2 -15 183 3 6 786 229 344 74 7 chr11 26439247 26439531 -95404325 - L1_Mur3 LINE L1 -471 5409 5107 6 786 1539 226 21 62 chr11 26439531 26439917 -95403939 + ORR1D2 LTR MaLR 1 370 0 6 786 1109 182 0 39 chr11 26440070 26440276 -95403580 + URR1A DNA MER1_type 1 198 -28 6 786 359 277 56 111 chr11 26440276 26440354 -95403502 - CYRA11_Mm Unknown Y-chromosome -227 386 119 6 786 473 322 40 28 chr11 26440376 26440798 -95403058 - L1MA5 LINE L1 -1306 4837 4411 5 786 1412 93 0 14 chr11 26441011 26441218 -95402638 - L1_Mus1 LINE L1 -1 6566 6363 6 786 292 297 42 37 chr11 26441292 26441533 -95402323 - L1MA5 LINE L1 -2018 4122 3881 5 786 1258 81 0 0 chr11 26441533 26441694 -95402162 + B2_Mm2 SINE B2 2 162 -33 6 786 198 0 0 0 chr11 26441694 26441716 -95402140 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 786 412 291 65 15 chr11 26441778 26442015 -95401841 - L1_Mur3 LINE L1 -2310 3836 3615 6 786 240 231 62 0 chr11 26442072 26442137 -95401719 - L1MA5 LINE L1 -2583 3560 3492 5 786 268 221 11 23 chr11 26442185 26442273 -95401583 + GA-rich Low_complexity Low_complexity 5 91 0 6 786 216 0 0 0 chr11 26442284 26442308 -95401548 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 786 706 294 0 24 chr11 26442312 26442518 -95401338 + B3 SINE B2 2 202 -14 6 786 6540 223 73 81 chr11 26442901 26444719 -95399137 + Lx6 LINE L1 5610 7411 -49 6 786 1044 146 0 0 chr11 26444741 26444919 -95398937 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 786 646 287 33 42 chr11 26445477 26445914 -95397942 + RLTR11A2 LTR ERVK 52 452 -76 6 786 2837 180 24 20 chr11 26446009 26446553 -95397303 - RMER15 LTR ERVL -29 546 1 6 786 290 305 139 35 chr11 26447212 26447385 -95396471 + MLT1F1 LTR MaLR 24 214 -355 6 786 297 197 0 0 chr11 26447414 26447485 -95396371 + CT-rich Low_complexity Low_complexity 2 72 0 6 786 378 0 0 0 chr11 26448887 26448929 -95394927 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 786 372 321 9 0 chr11 26450527 26450636 -95393220 + RMER15 LTR ERVL 396 505 -70 6 786 440 335 77 47 chr11 26450689 26450924 -95392932 + RMER15-int LTR ERVL 19 260 -4739 6 786 2004 271 81 18 chr11 26451229 26451898 -95391958 + RMER15-int LTR ERVL 665 1375 -3624 6 786 613 334 51 56 chr11 26451963 26452356 -95391500 + RMER15-int LTR ERVL 1496 1886 -3113 6 786 852 96 9 0 chr11 26452408 26452523 -95391333 + L1Md_F2 LINE L1 5483 5607 -633 6 786 8158 65 15 5 chr11 26452524 26453509 -95390347 + L1Md_F2 LINE L1 5588 6582 0 6 786 295 75 0 0 chr11 26453510 26453550 -95390306 + MusHAL1 LINE L1 524 563 -2791 6 786 600 139 99 0 chr11 26453550 26453651 -95390205 + B2_Mm1t SINE B2 2 112 -81 6 786 6662 77 8 8 chr11 26453651 26455336 -95388520 + L1Md_F LINE L1 392 2077 -3806 6 786 852 97 0 0 chr11 26455331 26455445 -95388411 + L1Md_F2 LINE L1 6401 6514 -68 6 786 3301 6 5 50 chr11 26455445 26455829 -95388027 + IAPLTR1_Mm LTR ERVK 1 367 0 6 786 8968 68 65 11 chr11 26455831 26457126 -95386730 + IAPEz-int LTR ERVK 3 1313 -5168 6 786 29577 17 1 2 chr11 26457125 26460390 -95383466 + IAPEz-int LTR ERVK 3210 6471 -10 6 786 3301 6 5 50 chr11 26460400 26460784 -95383072 + IAPLTR1_Mm LTR ERVK 1 367 0 6 786 475 84 0 0 chr11 26460784 26460846 -95383010 + L1Md_F2 LINE L1 6508 6569 -13 6 786 288 54 0 0 chr11 26460846 26460883 -95382973 + MusHAL1 LINE L1 527 563 -2791 6 786 616 129 9 0 chr11 26460883 26460989 -95382867 + B2_Mm1t SINE B2 2 107 -88 6 786 7791 65 2 0 chr11 26460989 26461964 -95381892 + L1Md_F2 LINE L1 4609 5585 -298 6 786 8530 41 19 0 chr11 26461965 26462940 -95380916 + L1Md_F2 LINE L1 5587 6580 -2 6 786 27 0 0 0 chr11 26463109 26463136 -95380720 + AT_rich Low_complexity Low_complexity 1 27 0 6 786 596 71 0 0 chr11 26463147 26463232 -95380624 + B2_Mm1t SINE B2 102 186 -7 6 786 20708 143 104 5 chr11 26463241 26464936 -95378920 + L1VL4 LINE L1 1082 2866 -3017 6 786 573 15 0 0 chr11 26464936 26465002 -95378854 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 6 786 20708 149 104 6 chr11 26465002 26467351 -95376505 + L1VL4 LINE L1 2867 5535 -348 6 786 5928 78 1 9 chr11 26467352 26468099 -95375757 + L1_Mus2 LINE L1 5824 6564 -2 6 786 885 165 48 32 chr11 26468145 26468333 -95375523 + B2_Mm2 SINE B2 1 191 -4 6 786 3699 86 26 8 chr11 26468361 26468897 -95374959 + Lx3_Mus LINE L1 5878 6423 -586 6 786 2590 161 48 23 chr11 26468900 26469384 -95374472 + RLTR26 LTR ERVK 3 498 -144 6 786 283 79 0 0 chr11 26469397 26469435 -95374421 + RLTR26 LTR ERVK 605 642 0 6 786 4517 77 28 7 chr11 26469435 26470014 -95373842 + Lx3_Mus LINE L1 6419 7009 0 6 786 414 0 0 0 chr11 26470244 26470290 -95373566 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 6 786 651 88 0 0 chr11 26470290 26470381 -95373475 + (GGGA)n Simple_repeat Simple_repeat 2 92 0 6 786 235 207 35 0 chr11 26470436 26470494 -95373362 + GA-rich Low_complexity Low_complexity 4 63 0 6 786 326 288 13 53 chr11 26470529 26470661 -95373195 + PB1 SINE Alu 1 119 -195 6 786 459 0 0 0 chr11 26470831 26470882 -95372974 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 786 356 253 0 0 chr11 26470887 26470962 -95372894 - B3A SINE B2 -38 160 86 6 786 234 227 73 29 chr11 26471231 26471299 -95372557 + PB1 SINE Alu 57 127 0 6 786 374 247 87 24 chr11 26471360 26471517 -95372339 + L1MC LINE L1 2903 3091 -3055 6 786 322 250 0 42 chr11 26471562 26471633 -95372223 + RSINE1 SINE B4 83 150 -15 6 786 264 185 0 0 chr11 26471647 26471701 -95372155 + (CATA)n Simple_repeat Simple_repeat 1 54 0 6 786 269 180 78 35 chr11 26471759 26471874 -95371982 + L1MC LINE L1 3135 3254 -2892 6 786 279 0 0 0 chr11 26472038 26472069 -95371787 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 786 448 298 64 5 chr11 26472107 26472326 -95371530 + L1MC LINE L1 3520 3751 -2395 6 786 293 267 129 34 chr11 26472486 26472750 -95371106 + L1MC LINE L1 5003 5291 -855 6 786 342 305 137 0 chr11 26473381 26473512 -95370344 + Lx8 LINE L1 6349 6497 -976 6 786 703 276 166 23 chr11 26473526 26473827 -95370029 + Lx9 LINE L1 7098 7441 -203 6 786 381 75 0 0 chr11 26473837 26473890 -95369966 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 786 232 295 49 0 chr11 26474019 26474080 -95369776 + RMER15 LTR ERVL 496 559 -16 6 786 2004 121 45 16 chr11 26474160 26474470 -95369386 + ORR1A2 LTR MaLR 1 319 -8 6 786 1139 159 0 5 chr11 26474474 26474664 -95369192 - ORR1B1 LTR MaLR -18 376 188 6 786 3094 46 0 0 chr11 26474685 26475031 -95368825 + ORR1A1 LTR MaLR 1 346 0 6 786 4235 51 21 3 chr11 26475031 26475597 -95368259 + ORR1A1-int LTR MaLR 1 576 -1216 6 786 654 43 8 94 chr11 26475589 26475717 -95368139 - ORR1B1 LTR MaLR -212 117 1 6 786 227 390 7 81 chr11 26475718 26475866 -95367990 + L1MD2 LINE L1 219 355 -6192 6 786 366 312 154 23 chr11 26476097 26476402 -95367454 + L1MD2 LINE L1 648 992 -5555 6 787 235 237 0 17 chr11 26476858 26476918 -95366938 + L1MD2 LINE L1 1401 1459 -5181 6 787 279 282 88 66 chr11 26477031 26477213 -95366643 + L1MD2 LINE L1 1643 1828 -4812 6 787 291 305 92 26 chr11 26477309 26477504 -95366352 + L1MD2 LINE L1 2022 2229 -4411 6 787 345 205 50 25 chr11 26477525 26477605 -95366251 + ID4 SINE ID 2 83 0 6 787 234 297 49 33 chr11 26477737 26477859 -95365997 + L1MD2 LINE L1 3939 4062 -2482 6 787 1121 63 0 0 chr11 26477924 26478066 -95365790 + B1_Mus2 SINE Alu 6 147 0 6 787 387 235 6 34 chr11 26478069 26478245 -95365611 + GA-rich Low_complexity Low_complexity 2 172 0 6 787 489 280 91 56 chr11 26478249 26478711 -95365145 + L1MD2 LINE L1 4089 4566 -1978 6 787 1457 70 0 36 chr11 26478823 26479015 -95364841 + B2_Mm2 SINE B2 1 185 -10 6 787 493 129 21 0 chr11 26479015 26479108 -95364748 + GA-rich Low_complexity Low_complexity 1 95 0 6 787 1110 244 71 60 chr11 26479968 26480402 -95363454 + MT2A LTR ERVL 1 597 -4 6 787 288 134 75 118 chr11 26480462 26480555 -95363301 + RMER17C-int LTR ERVK 2810 2898 -340 6 787 282 194 0 0 chr11 26480607 26480669 -95363187 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 6 787 348 286 61 18 chr11 26480669 26480783 -95363073 - PB1D7 SINE Alu -1 119 1 6 787 207 0 0 0 chr11 26481239 26481262 -95362594 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 787 947 32 0 31 chr11 26481262 26481389 -95362467 - B1_Mus1 SINE Alu -24 124 2 6 787 24 0 0 0 chr11 26481425 26481449 -95362407 + AT_rich Low_complexity Low_complexity 1 24 0 6 787 327 49 0 0 chr11 26481793 26481834 -95362022 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 6 787 452 18 18 0 chr11 26481834 26481890 -95361966 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 787 289 299 8 108 chr11 26481890 26482010 -95361846 - PB1D10 SINE Alu -9 108 1 6 787 183 291 24 71 chr11 26483008 26483093 -95360763 + L2 LINE L2 2770 2850 -569 6 787 248 297 33 0 chr11 26483075 26483166 -95360690 + MIRb SINE MIR 148 241 -27 6 787 229 303 26 0 chr11 26484456 26484532 -95359324 + GA-rich Low_complexity Low_complexity 1 78 0 6 787 843 190 207 0 chr11 26484949 26485123 -95358733 + B3 SINE B2 1 210 -6 6 787 812 198 50 22 chr11 26488804 26488985 -95354871 + URR1B DNA MER1_type 2 187 -38 6 787 279 71 0 0 chr11 26490135 26490177 -95353679 + (A)n Simple_repeat Simple_repeat 1 42 0 6 787 353 329 59 0 chr11 26490843 26490995 -95352861 - MER105 DNA DNA -15 189 29 6 787 212 289 17 96 chr11 26491061 26491176 -95352680 + RSINE1 SINE B4 17 122 -43 6 787 246 62 0 0 chr11 26491901 26491933 -95351923 + (TATG)n Simple_repeat Simple_repeat 3 34 0 6 787 482 250 42 114 chr11 26491957 26492124 -95351732 + B3A SINE B2 39 193 -2 6 787 26 30 0 0 chr11 26492246 26492279 -95351577 + AT_rich Low_complexity Low_complexity 1 33 0 6 787 180 0 0 0 chr11 26492330 26492350 -95351506 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 6 787 745 246 159 31 chr11 26492355 26492645 -95351211 - MTD LTR MaLR -32 387 61 6 787 21 0 0 0 chr11 26493532 26493553 -95350303 + GC_rich Low_complexity Low_complexity 1 21 0 6 787 191 318 154 32 chr11 26494038 26494194 -95349662 + MIR SINE MIR 42 216 -46 6 787 1069 44 96 0 chr11 26494401 26494536 -95349320 + B1_Mus1 SINE Alu 1 148 0 6 787 180 0 0 0 chr11 26494536 26494556 -95349300 + (A)n Simple_repeat Simple_repeat 1 20 0 6 787 243 0 0 0 chr11 26494573 26494600 -95349256 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 787 395 313 28 57 chr11 26495091 26495155 -95348701 + ID SINE ID 8 73 -151 6 787 3069 40 3 0 chr11 26495155 26495505 -95348351 + L1Md_F2 LINE L1 6230 6580 -2 6 787 395 313 28 57 chr11 26495505 26495616 -95348240 + ID_B1 SINE B4 74 178 -46 6 787 353 307 0 0 chr11 26495651 26495739 -95348117 + B4A SINE B4 131 218 -74 6 787 297 0 0 0 chr11 26495740 26495773 -95348083 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 787 333 0 0 0 chr11 26495773 26495809 -95348047 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 787 751 266 58 111 chr11 26495904 26496159 -95347697 - Tigger7 DNA MER2_type -6 2485 2256 6 787 1361 254 60 6 chr11 26496159 26496507 -95347349 - ORR1D2 LTR MaLR -3 367 1 6 787 751 266 58 111 chr11 26496507 26496610 -95347246 - Tigger7 DNA MER2_type -236 2255 2147 6 787 344 358 202 8 chr11 26496625 26496873 -95346983 - Tigger7 DNA MER2_type -2193 298 3 6 787 606 273 130 0 chr11 26496920 26497081 -95346775 + B3A SINE B2 1 182 -16 6 787 377 289 47 41 chr11 26497130 26497329 -95346527 + L1ME1 LINE L1 5652 5851 -391 7 787 281 250 83 103 chr11 26498750 26498906 -95344950 + MTEb LTR MaLR 201 353 -26 7 787 349 233 11 11 chr11 26500528 26500615 -95343241 + PB1D10 SINE Alu 1 87 -30 1 787 228 226 16 31 chr11 26500637 26500701 -95343155 + ID4 SINE ID 5 67 -16 2 787 414 0 0 0 chr11 26500706 26500752 -95343104 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 787 755 323 74 67 chr11 26501382 26501628 -95342228 - MER34A LTR ERV1 -103 468 205 4 787 722 276 71 0 chr11 26501628 26501824 -95342032 - B3 SINE B2 -6 210 1 5 787 755 323 74 67 chr11 26501824 26502038 -95341818 - MER34A LTR ERV1 -367 204 5 4 787 1084 276 16 136 chr11 26502115 26502181 -95341675 - MTE2b LTR MaLR 0 379 322 6 787 767 127 199 7 chr11 26502181 26502332 -95341524 + B2_Mm2 SINE B2 2 181 -14 7 787 1084 276 16 136 chr11 26502332 26502693 -95341163 - MTE2b LTR MaLR -58 321 3 6 787 2193 163 70 13 chr11 26503746 26504144 -95339712 + MTC LTR MaLR 1 421 0 8 787 438 296 48 48 chr11 26504363 26504551 -95339305 - MTEa LTR MaLR -129 250 63 9 787 704 164 17 6 chr11 26504551 26504729 -95339127 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 787 226 247 25 99 chr11 26504742 26504823 -95339033 - MTEa LTR MaLR -304 75 1 9 787 23 33 0 0 chr11 26504923 26504953 -95338903 + AT_rich Low_complexity Low_complexity 1 30 0 1 787 1207 61 0 0 chr11 26506734 26506881 -95336975 + B1_Mus1 SINE Alu 2 148 0 1 787 313 330 17 59 chr11 26507535 26507654 -95336202 - MLT1B LTR MaLR -3 387 274 1 787 304 315 94 42 chr11 26507756 26507948 -95335908 - MLT1B LTR MaLR -291 214 13 1 787 230 106 21 0 chr11 26507948 26507995 -95335861 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 787 1281 266 73 30 chr11 26508113 26508540 -95335316 + RMER5 LTR ERV1 72 516 -18 1 787 23 0 0 0 chr11 26508600 26508623 -95335233 + AT_rich Low_complexity Low_complexity 1 23 0 1 787 257 296 67 36 chr11 26508662 26508827 -95335029 + L1M6 LINE L1 1621 1790 -4706 1 787 353 198 11 110 chr11 26508827 26508907 -95334949 + MLT1A LTR MaLR 1 71 -303 1 787 1331 229 94 22 chr11 26508907 26509278 -95334578 - MER70A LTR ERVL 0 472 75 1 787 315 269 26 0 chr11 26509328 26509406 -95334450 - ID4_ SINE ID 0 83 4 2 787 686 282 44 5 chr11 26510356 26510559 -95333297 - B3 SINE B2 -5 211 1 2 787 6190 102 15 0 chr11 26510629 26511517 -95332339 - L1_Mus3 LINE L1 -1 6637 5737 2 787 3996 97 112 0 chr11 26511517 26512136 -95331720 - L1_Mus3 LINE L1 -817 5066 4379 2 787 640 314 44 49 chr11 26512591 26512795 -95331061 + ID_B1 SINE B4 2 204 -20 2 787 1211 116 15 5 chr11 26513092 26513292 -95330564 - Lx3_Mus LINE L1 0 7009 6808 2 787 198 143 0 0 chr11 26513318 26513353 -95330503 + (A)n Simple_repeat Simple_repeat 1 35 0 2 787 209 33 33 0 chr11 26513363 26513393 -95330463 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 2 787 19652 159 33 42 chr11 26515715 26519357 -95324499 - MERVL_2A-int LTR ERVL -2153 3608 2 2 787 498 282 52 52 chr11 26519359 26519401 -95324455 - MT2A LTR ERVL -23 561 520 2 787 668 64 27 18 chr11 26519401 26519513 -95324343 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 2 787 949 238 65 112 chr11 26519513 26519933 -95323923 - MT2A LTR ERVL -70 531 1 2 787 21 36 0 0 chr11 26519975 26520003 -95323853 + AT_rich Low_complexity Low_complexity 1 28 0 2 787 407 292 0 43 chr11 26520004 26520097 -95323759 - RSINE1 SINE B4 -6 159 71 3 787 21 0 0 0 chr11 26520592 26520613 -95323243 + AT_rich Low_complexity Low_complexity 1 21 0 3 787 326 284 10 10 chr11 26520744 26520847 -95323009 + GA-rich Low_complexity Low_complexity 3 105 0 3 787 301 282 63 9 chr11 26520881 26520992 -95322864 + L1MB3 LINE L1 5679 5795 -376 3 787 345 219 197 66 chr11 26521075 26521197 -95322659 - ID_B1 SINE B4 0 224 87 3 787 773 288 36 34 chr11 26521203 26521559 -95322297 + L1MB3 LINE L1 5817 6173 -10 3 787 326 143 16 0 chr11 26521564 26521627 -95322229 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 787 289 277 277 0 chr11 26521676 26521817 -95322039 - B3A SINE B2 -16 182 3 3 787 372 311 33 20 chr11 26523230 26523381 -95320475 + Charlie4a DNA MER1_type 151 303 -205 3 787 551 258 30 22 chr11 26523388 26523523 -95320333 + ID_B1 SINE B4 80 215 -9 3 787 23 33 0 0 chr11 26523770 26523800 -95320056 + AT_rich Low_complexity Low_complexity 1 30 0 3 787 23834 158 15 14 chr11 26523943 26529301 -95314555 - Lx LINE L1 -3 6651 1286 4 787 37380 35 13 17 chr11 26529307 26530954 -95312902 - L1Md_T LINE L1 0 6582 4927 4 787 227 183 46 77 chr11 26530954 26531019 -95312837 + RMER20A LTR ERVK 186 248 -268 4 787 37380 35 13 17 chr11 26531019 26535534 -95308322 - L1Md_T LINE L1 0 4926 385 4 787 3763 102 133 15 chr11 26535531 26536140 -95307716 - L1VL2 LINE L1 -5332 1003 323 4 787 278 274 0 46 chr11 26536329 26536394 -95307462 + MTD LTR MaLR 7 68 -311 4 787 385 276 19 28 chr11 26536376 26536484 -95307372 + MTD LTR MaLR 250 356 -63 4 787 890 311 72 33 chr11 26537150 26537482 -95306374 + MTE2a LTR MaLR 35 379 0 4 787 497 299 82 20 chr11 26537515 26537662 -95306194 + RSINE1 SINE B4 10 165 0 4 787 258 32 0 0 chr11 26537667 26537698 -95306158 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 787 218 140 20 20 chr11 26538521 26538557 -95305299 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 4 787 298 361 28 0 chr11 26538557 26538665 -95305191 - PB1D7 SINE Alu -7 113 3 4 787 218 140 20 20 chr11 26538665 26538679 -95305177 + (TTTA)n Simple_repeat Simple_repeat 2 16 0 5 787 311 280 0 0 chr11 26538948 26539023 -95304833 + B3A SINE B2 5 79 -119 5 787 414 0 0 0 chr11 26539093 26539139 -95304717 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 787 1205 97 17 6 chr11 26539172 26539348 -95304508 + B2_Mm2 SINE B2 1 178 -17 5 787 395 67 0 0 chr11 26539386 26539446 -95304410 + B2_Mm1a SINE B2 127 186 -7 5 787 939 79 0 0 chr11 26539451 26539577 -95304279 - L1_Mus2 LINE L1 -552 6014 5889 5 787 3289 85 9 2 chr11 26539577 26540025 -95303831 + L1_Mus2 LINE L1 6116 6566 0 5 787 23 0 0 0 chr11 26541128 26541151 -95302705 + AT_rich Low_complexity Low_complexity 1 23 0 5 787 212 273 148 0 chr11 26541425 26541513 -95302343 - MIRc SINE MIR -123 145 41 5 787 455 355 33 0 chr11 26542007 26542128 -95301728 + RSINE1 SINE B4 29 153 -12 5 787 620 178 84 89 chr11 26542257 26542436 -95301420 + B2_Mm2 SINE B2 11 188 -7 5 787 810 260 22 63 chr11 26542551 26542773 -95301083 - B4A SINE B4 -77 215 3 6 787 324 302 100 8 chr11 26542870 26542990 -95300866 - MLT1D LTR MaLR 0 505 375 6 787 1005 347 78 66 chr11 26543334 26544427 -95299429 - ORR1E-int LTR MaLR 0 1370 283 6 787 819 267 84 81 chr11 26544429 26544739 -95299117 + Lx6 LINE L1 7124 7434 -26 6 787 639 315 142 23 chr11 26544782 26545042 -95298814 - ORR1E-int LTR MaLR -1262 318 28 6 787 374 384 110 24 chr11 26545060 26545388 -95298468 - ORR1E LTR MaLR -14 356 1 6 787 32 0 0 0 chr11 26546071 26546103 -95297753 + AT_rich Low_complexity Low_complexity 1 32 0 6 787 714 52 10 0 chr11 26546329 26546426 -95297430 - L1VL4 LINE L1 -1506 4377 4280 6 787 14970 125 17 22 chr11 26546442 26549262 -95294594 - L1VL4 LINE L1 -2152 3731 952 6 787 687 96 19 0 chr11 26549265 26549369 -95294487 - B1_Mus2 SINE Alu -2 145 40 6 787 402 183 45 71 chr11 26549295 26549407 -95294449 - MT2B LTR ERVL -336 265 157 6 787 393 171 0 0 chr11 26549424 26549494 -95294362 - L1VL4 LINE L1 -5822 794 725 6 787 440 261 55 33 chr11 26549475 26549657 -95294199 - L1VL4 LINE L1 -5790 826 641 6 787 485 272 11 96 chr11 26549688 26549936 -95293920 - L1VL1 LINE L1 -6027 395 45 6 787 5268 92 3 27 chr11 26550068 26550688 -95293168 - L1_Mus3 LINE L1 -7 6631 6030 6 787 2702 101 27 15 chr11 26550688 26551092 -95292764 + RLTR9E LTR ERVK 1 409 0 7 787 5268 92 3 27 chr11 26551092 26551254 -95292602 - L1_Mus3 LINE L1 -609 6029 5868 6 787 325 270 0 0 chr11 26551362 26551436 -95292420 + MER21B LTR ERV1 3 76 -787 7 787 1013 191 53 108 chr11 26551684 26552014 -95291842 - RMER6D LTR ERVK 0 720 453 7 787 421 38 24 36 chr11 26552163 26552246 -95291610 + (TAA)n Simple_repeat Simple_repeat 1 82 0 7 787 1492 171 63 78 chr11 26552377 26552426 -95291430 - RMER6D LTR ERVK -390 330 285 7 787 1820 209 80 72 chr11 26552426 26552927 -95290929 + RLTR19C LTR ERVK 1 505 -1 7 787 1492 171 63 78 chr11 26552927 26553212 -95290644 - RMER6D LTR ERVK -436 284 1 7 787 231 317 108 43 chr11 26553231 26553462 -95290394 - RMER17C LTR ERVK -48 362 117 7 787 646 260 0 0 chr11 26553470 26553597 -95290259 - B1_Mus1 SINE Alu -21 127 1 7 787 333 0 0 0 chr11 26553605 26553642 -95290214 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 7 787 197 100 50 0 chr11 26554386 26554426 -95289430 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 7 787 352 370 18 30 chr11 26554533 26554700 -95289156 - MIR SINE MIR -84 178 14 7 787 1175 300 68 18 chr11 26555081 26555465 -95288391 + MTD LTR MaLR 1 403 -16 8 787 3353 169 97 52 chr11 26555673 26556404 -95287452 + RLTR25B LTR ERVK 2 765 -263 8 787 235 208 39 13 chr11 26556440 26556518 -95287338 + RLTR25B LTR ERVK 949 1028 0 8 787 1392 84 79 5 chr11 26556578 26556794 -95287062 + Lx LINE L1 6418 6649 -5 8 787 651 88 0 0 chr11 26557269 26557360 -95286496 + (GA)n Simple_repeat Simple_repeat 2 92 0 8 787 612 299 25 56 chr11 26557950 26558148 -95285708 + B3A SINE B2 1 192 -6 8 787 418 349 77 7 chr11 26558201 26558487 -95285369 + Charlie7 DNA MER1_type 1701 2006 -606 8 787 286 344 113 38 chr11 26558505 26558638 -95285218 + RSINE1 SINE B4 8 150 -15 8 787 775 73 0 16 chr11 26558639 26558765 -95285091 + (CA)n Simple_repeat Simple_repeat 1 124 0 8 787 22 0 0 0 chr11 26558766 26558788 -95285068 + AT_rich Low_complexity Low_complexity 1 22 0 8 787 404 270 19 63 chr11 26559171 26559329 -95284527 + LTR80B LTR ERVL 125 275 -309 8 787 27 49 0 0 chr11 26559775 26559816 -95284040 + AT_rich Low_complexity Low_complexity 1 41 0 9 787 1623 176 101 3 chr11 26560210 26560518 -95283338 - ORR1A1 LTR MaLR -8 338 1 9 787 656 309 16 22 chr11 26560518 26560700 -95283156 - ID_B1 SINE B4 -27 197 17 9 787 2534 180 32 46 chr11 26560960 26561529 -95282327 - RLTR31_Mm LTR ERVK 0 561 1 9 787 260 244 105 0 chr11 26561674 26561760 -95282096 - RMER10A LTR ERVL -27 415 321 9 787 249 135 0 0 chr11 26562052 26562089 -95281767 + L1VL4 LINE L1 8 44 -6258 9 787 3312 124 10 0 chr11 26562090 26562612 -95281244 + L1VL4 LINE L1 421 947 -5355 9 787 2672 39 27 0 chr11 26562612 26562945 -95280911 - MTA_Mm LTR MaLR -54 342 1 9 787 5800 100 11 8 chr11 26562945 26563844 -95280012 + MusHAL1 LINE L1 328 1229 -1483 9 787 5611 143 12 9 chr11 26563833 26564780 -95279076 + L1_Mur2 LINE L1 3546 4494 -1383 9 787 1477 161 4 0 chr11 26564788 26565049 -95278807 - L1_Mm LINE L1 -1147 4736 4475 9 787 1157 157 5 10 chr11 26565047 26565246 -95278610 + L1_Mm LINE L1 5274 5471 -412 1 787 5024 96 65 23 chr11 26565246 26566025 -95277831 + L1_Mus4 LINE L1 5810 6621 -15 1 787 1183 55 0 0 chr11 26566025 26566170 -95277686 + B1_Mm SINE Alu 1 145 -2 1 787 30 27 0 0 chr11 26566170 26566207 -95277649 + AT_rich Low_complexity Low_complexity 1 37 0 1 787 387 0 0 0 chr11 26566259 26566302 -95277554 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 787 369 0 0 0 chr11 26567617 26567658 -95276198 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 787 35434 48 1 3 chr11 26569333 26574859 -95268997 + L1Md_T LINE L1 1 5589 -297 1 787 8410 34 0 0 chr11 26574859 26575855 -95268001 + L1Md_T LINE L1 5590 6585 0 1 787 21 0 0 0 chr11 26576136 26576157 -95267699 + AT_rich Low_complexity Low_complexity 1 21 0 1 787 595 225 88 132 chr11 26576536 26576741 -95267115 - B3A SINE B2 0 198 3 1 787 1557 271 16 26 chr11 26576756 26577180 -95266676 - Lx6 LINE L1 -27 7433 7014 1 787 658 229 32 16 chr11 26577198 26577381 -95266475 - B3 SINE B2 -1 197 6 1 787 27 0 0 0 chr11 26577381 26577408 -95266448 + AT_rich Low_complexity Low_complexity 1 27 0 1 787 652 251 62 47 chr11 26577450 26577642 -95266214 - B3A SINE B2 -3 195 1 1 787 465 338 0 78 chr11 26577757 26577911 -95265945 - B1_Mur1 SINE Alu -5 144 3 1 787 1021 94 0 19 chr11 26578031 26578193 -95265663 + (TTTTC)n Simple_repeat Simple_repeat 2 160 0 1 787 983 325 160 9 chr11 26578319 26578980 -95264876 + Charlie1 DNA MER1_type 1461 2221 -560 1 787 333 276 20 20 chr11 26579050 26579150 -95264706 + Charlie1 DNA MER1_type 2343 2442 -339 1 787 438 268 94 43 chr11 26579151 26579268 -95264588 + PB1D7 SINE Alu 1 123 -4 1 787 418 279 92 24 chr11 26579397 26579603 -95264253 + Charlie1 DNA MER1_type 2557 2776 -5 1 787 842 282 81 50 chr11 26581654 26582027 -95261829 - MTD LTR MaLR 0 419 2 1 787 231 280 90 39 chr11 26582867 26583023 -95260833 - L1M6 LINE L1 -5428 1068 905 1 787 192 77 0 0 chr11 26585679 26585705 -95258151 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 787 559 326 101 73 chr11 26585807 26586313 -95257543 - MLT2B1 LTR ERVL 0 520 1 1 787 1606 152 182 47 chr11 26587058 26587464 -95256392 - RMER6B LTR ERVK 0 461 1 1 787 489 266 149 5 chr11 26587512 26587727 -95256129 - L1M5 LINE L1 -533 5646 5401 1 787 363 200 45 45 chr11 26587975 26588085 -95255771 + L1M3 LINE L1 5027 5136 -1004 1 787 269 309 22 93 chr11 26588091 26588230 -95255626 + RMER15 LTR ERVL 1 129 -446 1 787 397 273 202 20 chr11 26588273 26588471 -95255385 + RMER15 LTR ERVL 336 569 -6 1 787 799 279 83 3 chr11 26588473 26588761 -95255095 + L1MA7 LINE L1 5667 5977 -314 1 787 394 256 49 29 chr11 26588768 26588973 -95254883 - Lx9 LINE L1 -4 7640 7432 1 787 325 240 51 23 chr11 26589146 26589321 -95254535 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 787 188 34 0 33 chr11 26589332 26589362 -95254494 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 787 1044 254 147 35 chr11 26589645 26590019 -95253837 + MTD LTR MaLR 1 398 -21 1 787 216 0 0 0 chr11 26590920 26590944 -95252912 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 787 267 31 0 0 chr11 26590944 26590976 -95252880 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1 787 31 88 0 0 chr11 26591488 26591568 -95252288 + AT_rich Low_complexity Low_complexity 1 80 0 1 787 509 321 90 42 chr11 26592854 26593143 -95250713 + MLT1E2 LTR MaLR 1 303 -324 1 787 800 247 138 3 chr11 26593402 26593457 -95250399 + Lx6 LINE L1 976 1042 -6044 1 787 396 0 0 0 chr11 26593457 26593501 -95250355 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 787 1734 210 38 1 chr11 26593501 26594006 -95249850 + Lx6 LINE L1 1043 1581 -4296 1 787 5171 191 29 42 chr11 26594005 26594883 -95248973 + Lx6 LINE L1 2200 3046 -2834 1 787 366 42 0 0 chr11 26594883 26594931 -95248925 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 787 5171 191 29 42 chr11 26594931 26595304 -95248552 + Lx6 LINE L1 3047 3433 -2447 1 787 28270 112 36 12 chr11 26595305 26601121 -95242735 + L1_Mus2 LINE L1 588 6565 -1 1 787 8638 207 93 50 chr11 26601127 26601816 -95242040 + Lx6 LINE L1 3421 4188 -1689 1 787 189 0 0 0 chr11 26601816 26601837 -95242019 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 787 8638 207 93 50 chr11 26601837 26602982 -95240874 + Lx6 LINE L1 4189 5314 -563 1 787 860 65 186 0 chr11 26602982 26603106 -95240750 - B1_Mm SINE Alu 0 147 1 1 787 8638 220 93 36 chr11 26603106 26604800 -95239056 + Lx6 LINE L1 5315 7138 -322 1 787 711 0 0 0 chr11 26604800 26604879 -95238977 + (TTTTG)n Simple_repeat Simple_repeat 5 83 0 1 787 6619 226 93 30 chr11 26604879 26605152 -95238704 + Lx6 LINE L1 7139 7434 -26 1 787 7240 92 26 18 chr11 26606141 26607532 -95236324 - L1_Mus4 LINE L1 -1 6635 5229 1 98 1196 41 7 0 chr11 26607541 26607686 -95236170 + B1_Mm SINE Alu 2 147 0 1 788 207 88 0 0 chr11 26607688 26607722 -95236134 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 788 342 0 0 0 chr11 26608097 26608135 -95235721 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 788 600 14 0 0 chr11 26608135 26608203 -95235653 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 788 806 286 101 21 chr11 26608725 26609083 -95234773 + L1MC LINE L1 5369 5754 -419 1 788 414 0 0 0 chr11 26609549 26609595 -95234261 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 788 4444 148 10 10 chr11 26609612 26610398 -95233458 - L1_Mur2 LINE L1 -1014 4863 4078 1 788 1468 115 62 16 chr11 26610396 26610541 -95233315 - MusHAL1 LINE L1 -1685 1027 870 1 788 207 0 0 0 chr11 26610541 26610564 -95233292 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 788 1468 115 62 16 chr11 26610564 26610674 -95233182 - MusHAL1 LINE L1 -1843 869 760 1 788 351 0 0 0 chr11 26610790 26610829 -95233027 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 788 423 0 0 0 chr11 26610834 26610881 -95232975 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 788 1752 238 69 51 chr11 26611117 26611213 -95232643 - RLTR20B1 LTR ERVK 0 563 470 1 788 324 0 0 0 chr11 26611213 26611249 -95232607 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 788 1140 111 0 0 chr11 26611249 26611420 -95232436 + (GA)n Simple_repeat Simple_repeat 1 171 0 1 788 1783 238 69 51 chr11 26611420 26611875 -95231981 - RLTR20B1 LTR ERVK -94 469 2 1 788 2055 200 24 45 chr11 26613660 26613890 -95229966 + RLTR11A2 LTR ERVK 1 235 -292 1 788 753 12 0 0 chr11 26613890 26613976 -95229880 + (GA)n Simple_repeat Simple_repeat 1 86 0 1 788 2055 200 24 45 chr11 26613976 26614283 -95229573 + RLTR11A2 LTR ERVK 236 527 0 1 788 31 0 0 0 chr11 26614382 26614413 -95229443 + AT_rich Low_complexity Low_complexity 1 31 0 1 788 553 289 31 0 chr11 26614452 26614611 -95229245 - RSINE1 SINE B4 0 165 2 1 788 204 40 0 0 chr11 26614783 26614808 -95229048 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 788 363 260 52 67 chr11 26614832 26615100 -95228756 + Lx9 LINE L1 7350 7613 -31 1 788 3839 110 50 5 chr11 26615129 26615725 -95228131 + Lx2 LINE L1 6375 6997 0 1 788 31 0 0 0 chr11 26616291 26616322 -95227534 + AT_rich Low_complexity Low_complexity 1 31 0 1 788 263 297 19 38 chr11 26616589 26616694 -95227162 - Lx9 LINE L1 -360 7284 7182 1 788 1643 333 11 20 chr11 26616755 26617405 -95226451 - Lx9 LINE L1 -602 7042 6399 1 788 6637 114 72 57 chr11 26618999 26620897 -95222959 - L1_Mus3 LINE L1 -6 6632 4700 1 788 234 0 0 0 chr11 26620916 26620942 -95222914 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 788 907 251 14 14 chr11 26621380 26621594 -95222262 + B3 SINE B2 2 215 -1 1 788 25 31 0 0 chr11 26622735 26622767 -95221089 + AT_rich Low_complexity Low_complexity 1 32 0 1 788 217 317 60 12 chr11 26623958 26624041 -95219815 + L2a LINE L2 3331 3417 -9 1 788 635 52 11 4 chr11 26624429 26624519 -95219337 - B1_Mm SINE Alu 0 147 25 1 788 459 0 0 0 chr11 26625012 26625063 -95218793 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 788 252 59 0 0 chr11 26625063 26625096 -95218760 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 788 318 143 0 0 chr11 26626595 26626658 -95217198 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 788 614 63 0 21 chr11 26627371 26627468 -95216388 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 1 788 229 196 0 0 chr11 26627470 26627516 -95216340 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 788 24 0 0 0 chr11 26627741 26627765 -95216091 + AT_rich Low_complexity Low_complexity 1 24 0 1 788 516 176 0 0 chr11 26629062 26629164 -95214692 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 788 536 231 162 23 chr11 26629199 26629417 -95214439 - B4A SINE B4 -23 269 22 1 788 277 284 141 40 chr11 26629455 26629554 -95214302 + MER102b DNA MER1_type 120 228 -113 1 788 215 382 79 0 chr11 26629668 26629744 -95214112 - ID4_ SINE ID 0 83 2 1 788 1030 272 18 25 chr11 26631732 26632015 -95211841 - B4 SINE B4 -11 281 1 1 788 206 200 0 0 chr11 26632127 26632162 -95211694 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 788 408 20 0 0 chr11 26632162 26632211 -95211645 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 788 390 42 0 0 chr11 26632211 26632258 -95211598 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 788 33793 36 0 0 chr11 26632852 26638276 -95205580 + L1Md_T LINE L1 69 5589 -297 1 788 8898 7 0 7 chr11 26638276 26639279 -95204577 + L1Md_T LINE L1 5590 6585 0 1 788 232 137 19 19 chr11 26639599 26639651 -95204205 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 788 405 58 0 0 chr11 26640286 26640338 -95203518 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1 788 1119 118 6 0 chr11 26640338 26640499 -95203357 - B2_Mm2 SINE B2 -33 162 1 1 788 2613 62 6 0 chr11 26640668 26641081 -95202775 - L1_Mus1 LINE L1 -634 5933 5519 1 788 4357 77 53 0 chr11 26641082 26641682 -95202174 + L1_Mus1 LINE L1 5936 6567 0 1 788 678 156 31 47 chr11 26641843 26641971 -95201885 + B1_Mur2 SINE Alu 24 149 0 1 788 441 156 0 0 chr11 26642244 26642321 -95201535 + (TTA)n Simple_repeat Simple_repeat 2 78 0 1 788 389 258 237 30 chr11 26642578 26642810 -95201046 + B4 SINE B4 1 280 -12 1 788 22401 165 15 20 chr11 26643196 26649669 -95194187 + Lx2 LINE L1 554 6992 -5 1 788 203 0 0 36 chr11 26649669 26649697 -95194159 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 788 620 138 0 8 chr11 26649783 26649900 -95193956 + (TC)n Simple_repeat Simple_repeat 2 117 0 1 788 555 193 36 9 chr11 26650935 26651045 -95192811 - RLTR20A1 LTR ERVK 0 551 439 1 788 411 335 77 51 chr11 26651301 26651637 -95192219 + Charlie20a DNA Charlie 431 775 -32 1 788 30 0 0 0 chr11 26652126 26652156 -95191700 + AT_rich Low_complexity Low_complexity 1 30 0 1 788 668 324 102 58 chr11 26652289 26652870 -95190986 - MLT1E2 LTR MaLR -5 619 13 1 788 681 13 0 0 chr11 26654270 26654348 -95189508 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 788 1913 179 83 35 chr11 26654358 26654780 -95189076 - RMER10A LTR ERVL 0 442 1 2 788 284 333 71 52 chr11 26654783 26654938 -95188918 + MLT1B-int LTR MaLR 103 260 -1127 2 788 444 161 0 0 chr11 26654942 26655023 -95188833 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 788 232 108 0 0 chr11 26655171 26655208 -95188648 + Lx8 LINE L1 7417 7453 -20 2 788 1205 260 75 64 chr11 26655437 26655534 -95188322 - Lx8 LINE L1 -5 7468 7372 2 788 516 32 0 0 chr11 26655534 26655596 -95188260 + (TCC)n Simple_repeat Simple_repeat 3 64 0 2 788 1205 260 75 64 chr11 26655596 26655954 -95187902 - Lx8 LINE L1 -102 7371 7009 2 788 1825 77 4 19 chr11 26656017 26656282 -95187574 + L1_Mus2 LINE L1 6306 6566 0 2 788 455 255 120 39 chr11 26656515 26656723 -95187133 + MLT1B LTR MaLR 5 229 -161 2 788 801 183 109 32 chr11 26657353 26657573 -95186283 + RMER20B LTR ERVK 131 367 -260 2 788 693 279 13 0 chr11 26658276 26658430 -95185426 + RSINE1 SINE B4 3 158 -7 2 788 281 366 27 70 chr11 26658430 26658461 -95185395 + B3A SINE B2 2 178 -20 2 788 408 155 0 0 chr11 26658541 26658612 -95185244 + GA-rich Low_complexity Low_complexity 2 72 0 2 788 717 120 7 15 chr11 26658627 26658762 -95185094 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 2 788 1441 130 9 0 chr11 26658818 26659049 -95184807 - Lx2 LINE L1 0 6997 6765 2 788 242 128 0 0 chr11 26659053 26659092 -95184764 - Lx2 LINE L1 -368 6629 6591 2 788 422 294 135 0 chr11 26659252 26659422 -95184434 + MER58A DNA MER1_type 17 209 -15 2 788 215 203 0 17 chr11 26659536 26659596 -95184260 + CT-rich Low_complexity Low_complexity 3 61 0 2 788 513 0 0 0 chr11 26661036 26661093 -95182763 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 788 754 279 96 59 chr11 26662591 26662915 -95180941 + MLT2B1 LTR ERVL 1 336 -184 2 788 788 197 92 0 chr11 26663043 26663185 -95180671 - RLTR17 LTR ERVK -326 366 212 2 788 960 178 35 6 chr11 26663473 26663643 -95180213 + B2_Mm2 SINE B2 1 175 -20 2 788 835 179 0 0 chr11 26663659 26663793 -95180063 + B1_Mur4 SINE Alu 5 138 -12 2 788 23 54 0 0 chr11 26664031 26664068 -95179788 + AT_rich Low_complexity Low_complexity 1 37 0 2 788 198 103 0 0 chr11 26664394 26664423 -95179433 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 788 264 122 0 0 chr11 26664874 26664915 -95178941 + (CCCTG)n Simple_repeat Simple_repeat 4 44 0 2 788 1313 242 16 7 chr11 26665217 26665520 -95178336 - MTD LTR MaLR -109 310 5 2 788 213 39 0 0 chr11 26666460 26666486 -95177370 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 788 204 40 0 0 chr11 26667644 26667669 -95176187 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 788 225 281 80 66 chr11 26668398 26668535 -95175321 + L1MA9 LINE L1 674 812 -5329 2 788 3120 192 79 39 chr11 26668714 26669460 -95174396 - L1_Mur3 LINE L1 -6655 1057 282 2 788 1017 304 86 39 chr11 26669472 26670091 -95173765 + L1MA9 LINE L1 4169 4876 -1334 2 788 333 0 0 0 chr11 26670091 26670128 -95173728 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 788 1017 304 71 41 chr11 26670128 26670321 -95173535 + L1MA9 LINE L1 4869 5074 -1136 2 788 363 248 211 17 chr11 26670483 26670696 -95173160 + L1MA9 LINE L1 5326 5575 -657 2 788 250 315 26 35 chr11 26670745 26670766 -95173090 + MT2B LTR ERVL 145 164 -437 2 788 624 231 92 0 chr11 26670766 26670896 -95172960 + B1_Mur2 SINE Alu 2 143 -6 2 788 1370 268 120 9 chr11 26670897 26671540 -95172316 + L1MA9 LINE L1 5661 6374 -2 2 788 299 65 22 0 chr11 26672544 26672590 -95171266 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 788 693 53 0 0 chr11 26672590 26672683 -95171173 + (GA)n Simple_repeat Simple_repeat 1 94 0 2 788 333 0 0 0 chr11 26676246 26676283 -95167573 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 788 189 315 84 32 chr11 26676784 26676879 -95166977 - MIRc SINE MIR -75 193 94 2 788 197 302 80 58 chr11 26676979 26677116 -95166740 + MIRb SINE MIR 78 217 -51 2 788 267 217 0 0 chr11 26677441 26677501 -95166355 + CT-rich Low_complexity Low_complexity 3 62 0 2 788 1155 54 0 0 chr11 26677501 26677648 -95166208 - B1_Mm SINE Alu 0 147 1 2 788 779 291 42 14 chr11 26678606 26678822 -95165034 - MLT1A0 LTR MaLR -143 222 1 2 788 2118 280 75 8 chr11 26680303 26681260 -95162596 - Lx8 LINE L1 0 7473 6425 2 788 241 311 119 24 chr11 26684765 26684933 -95158923 + MIRb SINE MIR 77 260 -8 2 788 27 0 0 0 chr11 26685813 26685840 -95158016 + AT_rich Low_complexity Low_complexity 1 27 0 2 788 274 250 72 63 chr11 26686038 26686149 -95157707 - MLT1H LTR MaLR -24 525 414 2 788 25 31 0 0 chr11 26686312 26686344 -95157512 + AT_rich Low_complexity Low_complexity 1 32 0 2 788 245 296 236 20 chr11 26686370 26686518 -95157338 - B3A SINE B2 -17 181 2 2 788 468 0 0 0 chr11 26687817 26687869 -95155987 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 2 788 2879 62 42 3 chr11 26688228 26688613 -95155243 - MTB LTR MaLR 0 400 1 2 788 22 0 0 0 chr11 26689346 26689368 -95154488 + AT_rich Low_complexity Low_complexity 1 22 0 2 788 21 36 0 0 chr11 26690570 26690598 -95153258 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 186 133 0 0 chr11 26691374 26691404 -95152452 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 788 342 67 0 0 chr11 26691411 26691456 -95152400 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 788 408 20 0 0 chr11 26691857 26691906 -95151950 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 788 323 263 13 0 chr11 26691949 26692025 -95151831 + Tigger5 DNA MER2_type 2311 2387 -19 2 788 21 36 0 0 chr11 26692085 26692113 -95151743 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 294 262 146 33 chr11 26693391 26693604 -95150252 + L1MA9 LINE L1 5866 6102 -210 2 788 189 213 0 0 chr11 26693735 26693782 -95150074 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 788 293 159 0 16 chr11 26693788 26693852 -95150004 + (CAT)n Simple_repeat Simple_repeat 2 64 0 2 788 23 68 0 0 chr11 26695255 26695299 -95148557 + AT_rich Low_complexity Low_complexity 1 44 0 2 788 243 0 0 0 chr11 26695491 26695518 -95148338 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 788 4280 117 3 21 chr11 26696744 26697400 -95146456 + Lx2 LINE L1 6354 6997 0 2 788 249 232 0 0 chr11 26699141 26699210 -95144646 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 788 248 77 0 25 chr11 26699650 26699690 -95144166 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 788 24 0 0 0 chr11 26700878 26700902 -95142954 + AT_rich Low_complexity Low_complexity 1 24 0 2 788 774 77 13 53 chr11 26700905 26701056 -95142800 + L1_Mus3 LINE L1 6492 6636 -2 2 788 1405 201 25 39 chr11 26701580 26702028 -95141828 + RMER17C LTR ERVK 19 439 -519 2 788 289 320 51 25 chr11 26703443 26703600 -95140256 + MER5A1 DNA MER1_type 1 161 -5 2 788 232 210 32 0 chr11 26704347 26704409 -95139447 - MIRb SINE MIR -60 208 145 2 788 258 105 0 0 chr11 26704438 26704476 -95139380 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 788 1092 119 0 0 chr11 26705593 26705761 -95138095 + (GGGAGA)n Simple_repeat Simple_repeat 1 168 0 2 788 183 162 0 0 chr11 26708699 26708736 -95135120 + T-rich Low_complexity Low_complexity 1 37 0 2 788 335 275 0 0 chr11 26708959 26709039 -95134817 + ID4_ SINE ID 2 81 -2 2 788 303 300 0 0 chr11 26709059 26709129 -95134727 + ID4_ SINE ID 8 77 -6 2 788 186 43 0 0 chr11 26710698 26710721 -95133135 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2 788 194 119 0 45 chr11 26711671 26711715 -95132141 + GA-rich Low_complexity Low_complexity 2 43 0 2 788 186 43 0 0 chr11 26712550 26712573 -95131283 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 788 208 130 21 42 chr11 26713046 26713094 -95130762 + (ATATG)n Simple_repeat Simple_repeat 4 50 0 2 788 221 267 0 16 chr11 26713614 26713675 -95130181 + CT-rich Low_complexity Low_complexity 3 62 0 2 788 423 352 35 0 chr11 26713744 26713886 -95129970 - RSINE1 SINE B4 -17 148 2 2 788 503 31 15 0 chr11 26713888 26713953 -95129903 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 2 788 279 0 0 0 chr11 26713953 26713984 -95129872 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2 788 290 344 65 0 chr11 26713984 26714077 -95129779 - PB1D10 SINE Alu -13 104 6 2 788 261 0 0 0 chr11 26714903 26714932 -95128924 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 788 215 269 12 0 chr11 26717187 26717239 -95126617 - MIRm SINE MIR -130 132 78 2 788 250 321 17 76 chr11 26717669 26717787 -95126069 + Charlie4z DNA MER1_type 48 158 -9 2 788 293 324 45 0 chr11 26718548 26718659 -95125197 + CT-rich Low_complexity Low_complexity 4 119 0 2 788 309 314 59 0 chr11 26719806 26719908 -95123948 + PB1D10 SINE Alu 1 108 -9 2 788 23 54 0 0 chr11 26719986 26720023 -95123833 + AT_rich Low_complexity Low_complexity 1 37 0 2 788 369 311 55 25 chr11 26720334 26720566 -95123290 - MLT1A0 LTR MaLR -57 308 1 2 788 193 345 110 7 chr11 26721050 26721196 -95122660 + MIRb SINE MIR 85 245 -23 2 788 264 205 157 26 chr11 26721561 26721674 -95122182 + LTR48 LTR ERV1 613 740 -47 2 788 907 190 130 0 chr11 26721674 26721874 -95121982 - URR1A DNA MER1_type 0 226 1 2 788 6784 75 19 3 chr11 26721971 26722882 -95120974 + L1_Mus3 LINE L1 5714 6638 0 2 788 429 76 25 12 chr11 26722923 26723003 -95120853 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 788 1355 272 79 16 chr11 26723003 26723384 -95120472 + Lx8 LINE L1 6971 7375 -98 2 788 534 318 87 34 chr11 26725314 26725578 -95118278 - B4A SINE B4 -13 279 2 2 788 612 234 14 7 chr11 26725885 26726031 -95117825 - B1_Mus2 SINE Alu 0 147 1 2 788 238 262 16 0 chr11 26726514 26726575 -95117281 - MIR SINE MIR -148 114 53 2 788 657 60 0 65 chr11 26726792 26726899 -95116957 - L1_Mus1 LINE L1 0 6567 6468 2 788 39 22 0 0 chr11 26727732 26727778 -95116078 + AT_rich Low_complexity Low_complexity 1 46 0 2 788 2547 53 3 0 chr11 26727859 26728178 -95115678 - L1_Mus1 LINE L1 -1 6566 6247 3 788 587 224 41 14 chr11 26729371 26729516 -95114340 + B1_Mur1 SINE Alu 1 149 0 3 788 349 264 108 54 chr11 26729893 26730041 -95113815 + RSINE1 SINE B4 9 164 -1 3 788 720 204 0 0 chr11 26730042 26730218 -95113638 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 788 236 315 53 8 chr11 26731060 26731191 -95112665 - L1M5 LINE L1 -669 5510 5374 3 788 337 293 133 25 chr11 26731238 26731434 -95112422 - L1M5 LINE L1 -836 5310 5094 3 788 30 0 0 0 chr11 26731641 26731671 -95112185 + AT_rich Low_complexity Low_complexity 1 30 0 3 788 1801 146 78 14 chr11 26733201 26733549 -95110307 + RLTR31_Mm LTR ERVK 5 374 -187 3 788 330 156 16 0 chr11 26733564 26733628 -95110228 + RMER3D-int LTR ERVK 2778 2842 0 3 788 1616 174 29 26 chr11 26733628 26734092 -95109764 + RLTR31_Mm LTR ERVK 1 440 -5 3 788 2796 209 94 57 chr11 26734102 26735259 -95108597 + RMER3D-int LTR ERVK 1 1533 -1309 3 788 27023 159 46 79 chr11 26735347 26737184 -95106672 + L1Md_F LINE L1 241 2065 -3818 3 788 261 0 0 0 chr11 26737184 26737213 -95106643 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 788 27023 119 9 93 chr11 26737213 26737469 -95106387 + L1Md_F LINE L1 2066 2309 -3574 3 788 2893 73 8 0 chr11 26737469 26737853 -95106003 - L1_Mus1 LINE L1 0 6567 6181 3 98 27023 119 9 93 chr11 26737853 26741864 -95101992 + L1Md_F LINE L1 2310 5882 -1 3 789 2174 78 7 10 chr11 26741868 26742178 -95101678 + RMER17A LTR ERVK 1 309 -442 3 789 665 73 10 0 chr11 26742178 26742274 -95101582 + (TC)n Simple_repeat Simple_repeat 1 97 0 3 789 1896 123 15 105 chr11 26742274 26742639 -95101217 + RMER17A LTR ERVK 415 751 0 3 789 5040 86 1 0 chr11 26742639 26743322 -95100534 + L1_Mus2 LINE L1 5882 6565 -1 3 789 1119 203 51 26 chr11 26743330 26743603 -95100253 + RMER3D-int LTR ERVK 1573 1852 -990 3 789 3681 198 96 8 chr11 26743606 26744544 -95099312 + MYSERV16_I-int LTR ERVK 1298 2318 -8 3 789 2472 188 46 13 chr11 26744552 26745092 -95098764 + RLTR31_Mm LTR ERVK 1 558 -3 3 789 243 0 0 0 chr11 26745465 26745492 -95098364 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 789 369 0 0 0 chr11 26745653 26745694 -95098162 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 789 654 150 95 29 chr11 26746178 26746315 -95097541 + RMER6B LTR ERVK 1 146 -315 3 789 617 123 78 17 chr11 26746336 26746452 -95097404 + RMER6B LTR ERVK 339 461 0 3 789 823 285 65 35 chr11 26746536 26747054 -95096802 + L1MC2 LINE L1 5758 6293 -1492 3 789 585 269 70 106 chr11 26747076 26747650 -95096206 - L1M4c LINE L1 -3194 3182 2630 3 789 1770 247 92 25 chr11 26747655 26748219 -95095637 - Lx8 LINE L1 -2 7471 6870 3 789 369 308 33 47 chr11 26748390 26748601 -95095255 - L1M4c LINE L1 -3816 2563 2356 3 789 394 315 53 22 chr11 26749049 26749276 -95094580 - L1M4c LINE L1 -4620 1764 1531 3 789 26 50 0 0 chr11 26749917 26749957 -95093899 + AT_rich Low_complexity Low_complexity 1 40 0 3 789 573 233 75 8 chr11 26750598 26750732 -95093124 + B1_Mur4 SINE Alu 1 143 -7 3 789 300 27 0 0 chr11 26750741 26750778 -95093078 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 789 234 0 0 0 chr11 26751004 26751030 -95092826 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 3 789 2000 204 36 39 chr11 26751200 26751614 -95092242 + MTC LTR MaLR 1 413 -8 3 789 261 0 0 0 chr11 26751809 26751838 -95092018 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 789 1110 148 0 0 chr11 26752666 26752842 -95091014 - ORR1A2 LTR MaLR -151 176 1 3 789 306 73 0 0 chr11 26754541 26754582 -95089274 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 789 725 186 7 69 chr11 26754582 26754726 -95089130 - B1_Mus1 SINE Alu 0 148 14 3 789 299 308 25 101 chr11 26754626 26754745 -95089111 - MT2B LTR ERVL -337 264 155 3 789 295 349 57 57 chr11 26754745 26754764 -95089092 - B4 SINE B4 -86 204 67 3 789 505 308 87 12 chr11 26754856 26755017 -95088839 - RMER2 LTR ERV1 0 567 395 3 789 322 323 30 30 chr11 26755300 26755399 -95088457 + PB1D7 SINE Alu 6 104 -16 3 789 249 291 127 0 chr11 26755567 26755646 -95088210 + MIR SINE MIR 64 152 -56 3 789 1182 68 0 0 chr11 26755992 26756139 -95087717 + B1_Mus2 SINE Alu 1 147 0 3 789 312 27 0 0 chr11 26756139 26756176 -95087680 + (A)n Simple_repeat Simple_repeat 1 37 0 3 789 17420 109 65 0 chr11 26756923 26757308 -95086548 - Lx2 LINE L1 -897 6100 5691 3 789 393 22 0 0 chr11 26757308 26757354 -95086502 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 789 17420 165 25 28 chr11 26757354 26759596 -95084260 - Lx2 LINE L1 -193 5693 3480 3 789 234 105 0 0 chr11 26759596 26759634 -95084222 + (TTG)n Simple_repeat Simple_repeat 1 38 0 3 789 17420 165 25 28 chr11 26759634 26760716 -95083140 - Lx2 LINE L1 -2407 3479 2381 3 789 21459 91 3 9 chr11 26760714 26764425 -95079431 - L1Md_A LINE L1 -1767 4116 446 3 789 831 335 16 11 chr11 26764441 26764818 -95079038 + MTEb LTR MaLR 1 379 0 3 789 1968 258 57 34 chr11 26764845 26766012 -95077844 - L1MA6 LINE L1 -154 6989 5801 3 789 323 319 114 4 chr11 26766236 26766491 -95077365 - L1MA6 LINE L1 -2664 4439 4154 3 789 1471 180 19 4 chr11 26766793 26767050 -95076806 + RLTR16 LTR ERVK 3 263 -242 3 789 407 255 161 0 chr11 26767051 26767212 -95076644 - L1MA6 LINE L1 -3270 3833 3647 3 789 451 271 40 7 chr11 26767367 26767519 -95076337 - L1MA6 LINE L1 -3801 3302 3146 3 789 261 211 19 0 chr11 26767519 26767571 -95076285 - RLTR18B LTR ERVK -448 64 12 3 789 1513 180 16 26 chr11 26767823 26768184 -95075672 + RMER6A LTR ERVK 297 690 0 3 789 528 297 54 11 chr11 26768185 26768369 -95075487 - Lx8 LINE L1 -572 6901 6710 3 789 341 294 88 59 chr11 26768545 26768881 -95074975 - L1MA6 LINE L1 -5096 2106 1624 3 789 1175 55 7 0 chr11 26769019 26769165 -95074691 - B1_Mm SINE Alu 0 147 1 3 789 3853 182 16 19 chr11 26769895 26770647 -95073209 - RMER6A LTR ERVK -6 750 1 3 789 227 185 55 18 chr11 26771412 26771467 -95072389 - L1MA6 LINE L1 -6904 126 70 3 789 22 80 0 0 chr11 26771891 26771941 -95071915 + AT_rich Low_complexity Low_complexity 1 50 0 3 789 24 0 0 0 chr11 26772452 26772476 -95071380 + AT_rich Low_complexity Low_complexity 1 24 0 3 789 326 285 158 30 chr11 26773134 26773532 -95070324 - L1MC4a LINE L1 -261 7621 7173 3 789 268 303 73 6 chr11 26773582 26773761 -95070095 - L1MC4a LINE L1 -967 7075 6885 3 789 1674 21 0 0 chr11 26773770 26773960 -95069896 + B2_Mm1a SINE B2 2 191 -2 3 789 456 345 30 64 chr11 26774028 26774263 -95069593 - B4A SINE B4 -2 290 64 3 789 8964 66 2 2 chr11 26774266 26776115 -95067741 - L1Md_F2 LINE L1 -12 6570 4722 3 789 21172 73 7 2 chr11 26776116 26779572 -95064284 + L1Md_F LINE L1 949 4418 -1465 3 789 298 264 0 0 chr11 26779572 26779644 -95064212 - B4A SINE B4 -220 72 1 3 789 627 323 45 86 chr11 26779644 26779887 -95063969 - L1MC4a LINE L1 -1029 6853 6609 3 789 459 0 0 0 chr11 26779887 26779938 -95063918 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 789 627 323 45 86 chr11 26779938 26779953 -95063903 - L1MC4a LINE L1 -1274 6608 6599 3 789 367 245 35 26 chr11 26779953 26780066 -95063790 - PB1D10 SINE Alu 0 117 4 3 789 627 323 45 86 chr11 26780066 26780531 -95063325 - L1MC4a LINE L1 -1284 6598 6158 3 789 452 314 48 87 chr11 26780650 26781131 -95062725 - L1ME1 LINE L1 -253 5926 5465 3 789 189 0 0 0 chr11 26782004 26782025 -95061831 + (A)n Simple_repeat Simple_repeat 1 21 0 3 789 367 352 51 15 chr11 26783259 26783455 -95060401 + L1ME4a LINE L1 5679 5881 -243 3 789 357 297 223 16 chr11 26783917 26784303 -95059553 - L1M5 LINE L1 -412 5761 5296 3 789 54 56 0 0 chr11 26784378 26784467 -95059389 + AT_rich Low_complexity Low_complexity 1 89 0 3 789 412 307 89 5 chr11 26784623 26784836 -95059020 - L1M2 LINE L1 -1226 4917 4687 3 789 353 367 41 13 chr11 26784863 26785029 -95058827 - MTE2a LTR MaLR -55 324 154 3 789 22 56 0 0 chr11 26785036 26785072 -95058784 + AT_rich Low_complexity Low_complexity 1 36 0 3 789 5998 203 84 42 chr11 26785341 26786290 -95057566 + RLTR21 LTR ERVK 1 1001 -571 3 789 537 83 0 0 chr11 26786290 26786374 -95057482 + (GGATG)n Simple_repeat Simple_repeat 5 88 0 3 789 5998 203 84 42 chr11 26786374 26786689 -95057167 + RLTR21 LTR ERVK 1002 1303 -269 3 789 384 22 0 0 chr11 26786689 26786734 -95057122 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 789 5998 203 84 42 chr11 26786734 26786964 -95056892 + RLTR21 LTR ERVK 1304 1558 -14 3 789 518 256 102 12 chr11 26787245 26787490 -95056366 - L1M2 LINE L1 -3607 2536 2270 3 789 1109 189 63 43 chr11 26787479 26787733 -95056123 - Lx LINE L1 -2 6652 6394 3 789 1838 104 29 29 chr11 26787732 26788008 -95055848 - Lx LINE L1 -147 6911 6636 3 789 2663 103 14 0 chr11 26788009 26788379 -95055477 - Lx LINE L1 -256 6398 6024 3 789 22 0 0 0 chr11 26788379 26788401 -95055455 + AT_rich Low_complexity Low_complexity 1 22 0 3 789 585 143 0 28 chr11 26788486 26788594 -95055262 - RMER3D-int LTR ERVK -798 2044 1940 3 789 630 192 46 0 chr11 26788622 26788752 -95055104 - RMER3D-int LTR ERVK -1163 1679 1544 3 789 1993 200 88 22 chr11 26788805 26789501 -95054355 - RMER3D-int LTR ERVK -1307 1535 354 3 789 2987 57 40 2 chr11 26789754 26790158 -95053698 - BGLII LTR ERVK 0 421 3 3 789 2843 102 7 2 chr11 26790159 26790628 -95053228 - Lx LINE L1 -669 5985 5515 3 789 781 281 68 64 chr11 26790871 26791311 -95052545 - L1MC LINE L1 -524 5809 5368 3 789 21 0 0 0 chr11 26791326 26791347 -95052509 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 3000 164 18 22 chr11 26791378 26791921 -95051935 - Lx4A LINE L1 -6 7052 6512 3 789 29 0 0 0 chr11 26792373 26792402 -95051454 + AT_rich Low_complexity Low_complexity 1 29 0 3 789 21 0 0 0 chr11 26792539 26792560 -95051296 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 803 176 49 0 chr11 26792593 26792735 -95051121 + B1_Mur4 SINE Alu 1 149 -1 3 789 422 114 0 14 chr11 26792742 26792813 -95051043 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 3 789 225 0 0 0 chr11 26792853 26792878 -95050978 + (A)n Simple_repeat Simple_repeat 1 25 0 3 789 3546 119 46 6 chr11 26792911 26793138 -95050718 - Lx3_Mus LINE L1 -858 6151 5904 3 789 261 0 0 0 chr11 26793138 26793167 -95050689 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 789 5583 94 7 36 chr11 26793167 26793798 -95050058 - Lx3_Mus LINE L1 -1106 5903 5276 3 789 210 37 0 0 chr11 26793798 26793825 -95050031 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 789 5583 93 6 37 chr11 26793825 26794053 -95049803 - Lx3_Mus LINE L1 -611 5275 5074 3 789 5707 110 14 2 chr11 26794053 26794890 -95048966 + Lx3_Mus LINE L1 6155 7001 -8 3 789 635 287 60 24 chr11 26795417 26795753 -95048103 - L1MC LINE L1 -852 5294 4947 3 789 377 287 66 7 chr11 26795952 26796089 -95047767 - L1MC LINE L1 -1467 4679 4535 3 789 7225 147 34 20 chr11 26796525 26798454 -95045402 + L1_Mus2 LINE L1 361 2308 -1606 3 789 12556 10 1 0 chr11 26798461 26800578 -95043278 - L1Md_A LINE L1 0 6582 4465 3 789 22435 113 13 16 chr11 26800578 26804866 -95038990 + L1_Mus2 LINE L1 2317 6997 0 3 789 1081 281 91 60 chr11 26804865 26804888 -95038968 - L1MC LINE L1 -1812 4334 4316 3 789 1283 273 105 50 chr11 26804888 26805431 -95038425 - RMER15 LTR ERVL 0 575 3 3 789 1081 281 91 60 chr11 26805431 26805747 -95038109 - L1MC LINE L1 -1831 4315 3987 3 789 1079 102 0 7 chr11 26805747 26805895 -95037961 + B1_Mus2 SINE Alu 1 147 0 3 789 1081 281 91 60 chr11 26805895 26806335 -95037521 - L1MC LINE L1 -2160 3986 3530 3 789 32 43 0 0 chr11 26806767 26806813 -95037043 + AT_rich Low_complexity Low_complexity 1 46 0 3 789 964 268 58 58 chr11 26806863 26807259 -95036597 - MLT1D LTR MaLR 0 505 110 3 789 1357 249 43 13 chr11 26807265 26807800 -95036056 - L1M2 LINE L1 -652 5648 5093 3 789 1085 88 0 26 chr11 26808026 26808178 -95035678 + B1_Mus1 SINE Alu 1 148 0 3 789 516 269 61 43 chr11 26808347 26808510 -95035346 - B4 SINE B4 -4 288 123 3 789 241 182 18 0 chr11 26808867 26808922 -95034934 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 3 789 303 313 76 47 chr11 26809093 26809264 -95034592 - L1M5 LINE L1 -2565 3581 3406 3 789 270 303 163 21 chr11 26809838 26810077 -95033779 + MER44A DNA MER2_type 2 274 -65 4 789 494 340 33 33 chr11 26810156 26810366 -95033490 - Tigger5 DNA MER2_type -2196 210 1 4 789 21 0 0 0 chr11 26811810 26811831 -95032025 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 23 0 0 0 chr11 26812341 26812364 -95031492 + AT_rich Low_complexity Low_complexity 1 23 0 4 789 1078 320 48 17 chr11 26812776 26813319 -95030537 - L1_Mur3 LINE L1 -445 5435 4876 4 789 415 0 36 0 chr11 26813319 26813374 -95030482 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 789 1260 240 216 24 chr11 26813378 26814086 -95029770 - L1_Mur3 LINE L1 -1386 4494 3651 4 789 314 333 8 0 chr11 26814093 26814225 -95029631 - L1_Mur3 LINE L1 -3318 2562 2430 4 789 1693 238 38 3 chr11 26814233 26814603 -95029253 + MTC LTR MaLR 34 416 -5 4 789 1290 307 45 21 chr11 26814608 26815317 -95028539 - L1_Mur3 LINE L1 -3447 2433 1708 4 789 23 33 0 0 chr11 26816049 26816079 -95027777 + AT_rich Low_complexity Low_complexity 1 30 0 4 789 603 333 17 28 chr11 26816079 26816255 -95027601 + B3A SINE B2 2 175 -23 4 789 188 34 0 33 chr11 26816316 26816346 -95027510 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 789 745 298 24 21 chr11 26816378 26816739 -95027117 - MTD LTR MaLR -14 405 5 4 789 225 0 0 0 chr11 26816746 26816771 -95027085 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 789 591 355 55 16 chr11 26817691 26818000 -95025856 - L1MEg LINE L1 -5524 560 240 4 789 7651 72 3 0 chr11 26818583 26819942 -95023914 + L1_Mus1 LINE L1 5205 6567 0 4 789 403 374 32 38 chr11 26819961 26820147 -95023709 + B3 SINE B2 27 211 -5 4 789 606 316 56 37 chr11 26820352 26820674 -95023182 - MLT1A1 LTR MaLR -2 406 79 4 789 189 0 0 0 chr11 26820688 26820709 -95023147 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 789 446 114 0 0 chr11 26820931 26821001 -95022855 + Lx2 LINE L1 6917 6986 -11 4 789 21 82 0 0 chr11 26821001 26821050 -95022806 + AT_rich Low_complexity Low_complexity 1 49 0 4 789 305 367 101 0 chr11 26821888 26822027 -95021829 - RSINE1 SINE B4 -8 157 5 4 789 293 216 131 20 chr11 26822392 26822491 -95021365 + MER94 DNA AcHobo 17 126 -8 4 789 760 147 0 15 chr11 26823260 26823391 -95020465 - URR1B DNA MER1_type 0 225 97 4 789 360 0 0 0 chr11 26824778 26824818 -95019038 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 789 408 397 13 13 chr11 26827724 26827877 -95015979 - RSINE1 SINE B4 -5 160 8 4 789 362 195 60 38 chr11 26828029 26828162 -95015694 + RMER17B LTR ERVK 325 460 -498 4 789 378 0 0 0 chr11 26828839 26828881 -95014975 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 789 21 36 0 0 chr11 26828906 26828934 -95014922 + AT_rich Low_complexity Low_complexity 1 28 0 4 789 548 53 13 0 chr11 26829262 26829338 -95014518 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 4 789 639 307 84 60 chr11 26829510 26830012 -95013844 - L1ME1 LINE L1 -199 5980 5467 4 789 180 176 0 0 chr11 26830573 26830607 -95013249 + T-rich Low_complexity Low_complexity 1 34 0 4 789 235 188 15 15 chr11 26831479 26831544 -95012312 + T-rich Low_complexity Low_complexity 3 67 0 4 789 447 19 0 0 chr11 26832061 26832113 -95011743 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 789 22 35 0 0 chr11 26832532 26832561 -95011295 + AT_rich Low_complexity Low_complexity 1 29 0 4 789 974 84 28 7 chr11 26833063 26833206 -95010650 + B1_Mus1 SINE Alu 2 147 -1 4 789 246 32 0 0 chr11 26833215 26833246 -95010610 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 4 789 24 32 0 0 chr11 26833843 26833874 -95009982 + AT_rich Low_complexity Low_complexity 1 31 0 4 789 495 267 29 7 chr11 26833896 26833923 -95009933 + ID SINE ID 55 84 -140 4 789 457 223 40 40 chr11 26833923 26834049 -95009807 + B1F2 SINE Alu 2 127 -22 4 789 270 0 0 0 chr11 26834150 26834180 -95009676 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 789 430 378 41 15 chr11 26834180 26834376 -95009480 - ID_B1 SINE B4 -14 210 10 4 789 26 30 0 0 chr11 26834508 26834541 -95009315 + AT_rich Low_complexity Low_complexity 1 33 0 4 789 251 360 20 48 chr11 26835371 26835517 -95008339 - MER5A1 DNA MER1_type -22 144 3 4 789 182 298 67 56 chr11 26835656 26835745 -95008111 - MER5A1 DNA MER1_type -68 98 9 4 789 258 258 0 16 chr11 26835817 26835880 -95007976 + MER34 LTR ERV1 53 114 -457 4 789 268 296 75 27 chr11 26836021 26836167 -95007689 + MER34 LTR ERV1 323 475 -67 4 789 255 263 40 0 chr11 26836612 26836688 -95007168 + MTEa-int LTR MaLR 1495 1573 -7 4 789 1204 309 38 32 chr11 26836695 26837066 -95006790 + MTEa LTR MaLR 1 373 -6 4 789 407 355 30 50 chr11 26837839 26838038 -95005818 + MER58A DNA MER1_type 5 199 -25 4 789 232 293 84 12 chr11 26838717 26838800 -95005056 - PB1D10 SINE Alu -24 93 5 4 789 180 97 0 0 chr11 26839725 26839756 -95004100 + (T)n Simple_repeat Simple_repeat 1 31 0 4 789 233 57 29 0 chr11 26839874 26839909 -95003947 + (TTG)n Simple_repeat Simple_repeat 3 38 0 4 789 331 294 138 39 chr11 26840853 26841136 -95002720 + L1MEg LINE L1 788 1098 -4986 4 789 273 301 109 23 chr11 26841149 26841370 -95002486 + L1MEg LINE L1 1299 1538 -4470 4 789 279 0 0 0 chr11 26841480 26841511 -95002345 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 789 292 167 0 0 chr11 26841529 26841577 -95002279 - MLT1A1 LTR MaLR -12 396 349 4 789 597 317 88 19 chr11 26842578 26842842 -95001014 + B4A SINE B4 4 282 -10 4 789 233 318 64 19 chr11 26843018 26843175 -95000681 + L1M5 LINE L1 5648 5811 -351 4 789 21 0 0 0 chr11 26843258 26843279 -95000577 + AT_rich Low_complexity Low_complexity 1 21 0 4 789 1210 237 36 62 chr11 26843524 26843878 -94999978 - MTD LTR MaLR -58 363 19 4 789 24 53 0 0 chr11 26844074 26844112 -94999744 + AT_rich Low_complexity Low_complexity 1 38 0 4 789 443 18 18 0 chr11 26844689 26844745 -94999111 + (TATG)n Simple_repeat Simple_repeat 4 60 0 4 789 241 327 59 50 chr11 26844797 26844916 -94998940 + MIRb SINE MIR 97 216 -52 4 789 279 54 0 0 chr11 26845153 26845190 -94998666 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 4 789 7906 133 23 4 chr11 26845786 26847027 -94996829 - Lx3B LINE L1 -3 6970 5706 4 789 557 347 8 64 chr11 26847519 26847753 -94996103 - ID_B1 SINE B4 0 224 4 4 789 412 203 184 11 chr11 26847824 26847998 -94995858 - Lx9 LINE L1 -7 7637 7434 4 789 216 0 0 0 chr11 26848967 26848991 -94994865 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 789 319 358 8 0 chr11 26849995 26850118 -94993738 - ID_B1 SINE B4 -6 218 95 4 789 979 92 14 14 chr11 26850612 26850756 -94993100 + B1_Mus1 SINE Alu 4 147 -1 4 789 359 173 12 0 chr11 26851006 26851087 -94992769 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 789 414 340 119 51 chr11 26851253 26851817 -94992039 + L1MC5 LINE L1 7191 7792 -169 4 789 1178 200 23 0 chr11 26852638 26852853 -94991003 - URR1B DNA MER1_type 0 225 6 4 789 701 103 17 0 chr11 26854741 26854857 -94988999 + (TTTTC)n Simple_repeat Simple_repeat 2 119 0 4 789 269 75 0 0 chr11 26855157 26855197 -94988659 - B1_Mm SINE Alu 0 147 108 4 789 333 0 0 0 chr11 26855294 26855331 -94988525 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 789 356 38 0 36 chr11 26855331 26855386 -94988470 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 4 789 970 107 43 0 chr11 26855800 26855940 -94987916 - B1_Mus1 SINE Alu -2 146 1 4 789 217 146 18 35 chr11 26856546 26856603 -94987253 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 789 216 97 0 0 chr11 26856931 26856962 -94986894 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 789 996 117 7 0 chr11 26857039 26857184 -94986672 + B1_Mus1 SINE Alu 3 148 0 4 789 249 108 0 0 chr11 26857184 26857221 -94986635 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 789 7724 97 12 1 chr11 26857286 26858991 -94984865 - L1_Mus3 LINE L1 -1 6637 4912 4 789 3914 118 77 17 chr11 26858985 26859646 -94984210 + L1_Mus3 LINE L1 4232 4932 -951 4 789 206 0 69 0 chr11 26861265 26861294 -94982562 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 4 789 384 95 40 13 chr11 26861327 26861402 -94982454 + (GAAAA)n Simple_repeat Simple_repeat 5 81 0 4 789 1234 64 12 0 chr11 26861866 26862039 -94981817 + (TC)n Simple_repeat Simple_repeat 2 176 0 4 789 1000 188 71 134 chr11 26868143 26868382 -94975474 - URR1A DNA MER1_type 0 226 3 4 790 38 39 0 0 chr11 26869807 26869859 -94973997 + AT_rich Low_complexity Low_complexity 1 52 0 4 790 323 325 159 0 chr11 26869867 26869993 -94973863 - RSINE1 SINE B4 -9 156 11 4 790 666 84 0 32 chr11 26870000 26870123 -94973733 - L1Md_F2 LINE L1 0 6582 6464 4 790 1967 58 0 0 chr11 26870123 26870365 -94973491 + L1Md_F2 LINE L1 6140 6381 -201 4 790 717 263 13 0 chr11 26871570 26871726 -94972130 + RSINE1 SINE B4 4 161 -4 4 790 254 206 0 14 chr11 26871738 26871807 -94972049 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 790 459 165 0 0 chr11 26871807 26871892 -94971964 + (CAGAGA)n Simple_repeat Simple_repeat 5 89 0 4 790 264 207 17 0 chr11 26873446 26873504 -94970352 - B4 SINE B4 -115 177 119 4 790 611 62 0 12 chr11 26873535 26873617 -94970239 - B1_Mur4 SINE Alu 0 150 70 4 790 218 200 0 0 chr11 26875798 26875848 -94968008 + A-rich Low_complexity Low_complexity 1 50 0 4 790 3586 91 6 8 chr11 26876497 26876996 -94966860 + L1_Mus3 LINE L1 6141 6638 0 4 790 1538 22 50 0 chr11 26877855 26878037 -94965819 + B2_Mm1t SINE B2 1 191 -2 4 790 180 0 0 0 chr11 26878073 26878093 -94965763 + (A)n Simple_repeat Simple_repeat 1 20 0 4 790 459 0 0 0 chr11 26878142 26878193 -94965663 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 790 515 107 12 0 chr11 26878194 26878278 -94965578 + (GA)n Simple_repeat Simple_repeat 1 85 0 4 790 22 88 0 0 chr11 26882104 26882161 -94961695 + AT_rich Low_complexity Low_complexity 1 57 0 4 790 22 0 0 0 chr11 26884594 26884616 -94959240 + AT_rich Low_complexity Low_complexity 1 22 0 4 790 641 240 0 46 chr11 26888259 26888412 -94955444 + B1_Mus2 SINE Alu 2 147 0 4 790 249 347 48 48 chr11 26888823 26888926 -94954930 + PB1 SINE Alu 11 113 -14 4 790 246 347 27 0 chr11 26888954 26889029 -94954827 + ID4 SINE ID 2 78 -5 5 790 443 283 70 76 chr11 26889421 26889723 -94954133 - L1MA5 LINE L1 -458 5842 5543 5 790 187 330 41 0 chr11 26890814 26890911 -94952945 - MIRc SINE MIR -18 250 150 5 790 507 315 14 20 chr11 26891950 26892096 -94951760 - RSINE1 SINE B4 -5 160 16 5 790 3135 193 26 48 chr11 26892628 26893383 -94950473 + Lx7 LINE L1 6956 7694 -2 5 790 430 292 72 125 chr11 26897921 26898226 -94945630 - B4A SINE B4 0 292 4 5 790 235 325 11 46 chr11 26898270 26898357 -94945499 + PB1 SINE Alu 43 126 -1 5 790 860 273 50 58 chr11 26898360 26898453 -94945403 + B4 SINE B4 3 86 -206 5 790 4449 79 23 5 chr11 26898453 26899107 -94944749 + L1Md_F2 LINE L1 5954 6582 0 5 790 860 273 50 58 chr11 26899107 26899253 -94944603 + B4 SINE B4 87 240 -52 5 790 348 24 0 0 chr11 26899312 26899353 -94944503 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 790 356 280 72 0 chr11 26899456 26899581 -94944275 - L1MB1 LINE L1 -253 5936 5803 5 790 4146 72 4 5 chr11 26901983 26902538 -94941318 + L1Md_F2 LINE L1 6017 6570 -12 5 790 39 22 0 0 chr11 26903607 26903653 -94940203 + AT_rich Low_complexity Low_complexity 1 46 0 5 790 232 402 7 66 chr11 26904342 26904478 -94939378 + Cheshire DNA MER1_type 163 290 -2130 5 790 234 0 0 0 chr11 26907225 26907251 -94936605 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 790 28040 122 9 20 chr11 26908590 26914934 -94928922 + L1_Mus1 LINE L1 261 6565 -2 5 790 869 284 97 118 chr11 26915122 26915548 -94928308 + MTE2a LTR MaLR 1 404 -15 5 790 390 275 0 52 chr11 26915556 26915671 -94928185 + PB1D10 SINE Alu 9 117 0 5 790 36250 44 1 6 chr11 26916506 26922501 -94921355 - L1Md_F2 LINE L1 -2 6580 623 5 790 377 153 14 0 chr11 26922648 26922720 -94921136 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 790 252 0 0 0 chr11 26922740 26922768 -94921088 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 790 330 45 0 0 chr11 26922768 26922811 -94921045 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 790 486 283 0 153 chr11 26922815 26922978 -94920878 - RSINE1 SINE B4 -16 149 12 5 790 250 355 100 6 chr11 26923123 26923293 -94920563 + MIR SINE MIR 68 253 -15 5 790 245 100 20 0 chr11 26923701 26923751 -94920105 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 5 790 5485 70 1 27 chr11 26923780 26924024 -94919832 - L1_Mus2 LINE L1 0 6566 6342 5 790 342 0 0 0 chr11 26924024 26924062 -94919794 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 790 5485 70 1 27 chr11 26924062 26924560 -94919296 - L1_Mus2 LINE L1 -225 6341 5844 5 790 240 330 27 64 chr11 26924763 26924873 -94918983 + MLT1G LTR MaLR 183 288 -303 5 790 215 215 0 15 chr11 26924883 26924949 -94918907 + GA-rich Low_complexity Low_complexity 1 65 0 5 790 432 0 0 0 chr11 26925358 26925406 -94918450 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 790 26 0 0 0 chr11 26926400 26926426 -94917430 + AT_rich Low_complexity Low_complexity 1 26 0 5 790 180 0 0 0 chr11 26927958 26927978 -94915878 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 790 1372 288 64 5 chr11 26928310 26928684 -94915172 - MTD LTR MaLR -16 403 8 5 790 249 98 0 0 chr11 26929107 26929148 -94914708 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 790 471 18 0 0 chr11 26929494 26929550 -94914306 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 790 1223 304 88 23 chr11 26929699 26930249 -94913607 + MTE2a-int LTR MaLR 944 1578 -2 5 790 927 275 29 122 chr11 26930251 26930669 -94913187 + MTE2a LTR MaLR 1 379 0 5 790 1240 303 150 29 chr11 26930712 26930810 -94913046 + L1MA5A LINE L1 3872 3971 -1909 5 790 1776 174 3 49 chr11 26930810 26931155 -94912701 + ORR1A4 LTR MaLR 1 329 0 5 790 1240 304 145 29 chr11 26931155 26932880 -94910976 + L1MA5A LINE L1 3972 5938 -359 5 790 28 86 0 0 chr11 26933126 26933196 -94910660 + AT_rich Low_complexity Low_complexity 1 70 0 5 790 384 71 0 0 chr11 26934215 26934271 -94909585 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 790 1004 272 108 23 chr11 26934271 26934614 -94909242 + MTE2a LTR MaLR 5 376 -3 5 790 306 0 0 0 chr11 26934615 26934649 -94909207 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 790 243 0 0 0 chr11 26934649 26934675 -94909181 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 790 218 333 0 0 chr11 26934870 26934924 -94908932 - B4A SINE B4 -236 56 3 5 790 22 56 0 0 chr11 26935608 26935644 -94908212 + AT_rich Low_complexity Low_complexity 1 36 0 5 790 1156 75 7 0 chr11 26936274 26936420 -94907436 + B1_Mus2 SINE Alu 1 147 0 5 790 275 0 58 39 chr11 26936422 26936474 -94907382 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 5 790 779 266 122 18 chr11 26936697 26937026 -94906830 + L1MA8 LINE L1 5679 6041 -250 5 790 4567 64 14 0 chr11 26937050 26937640 -94906216 - L1Md_F2 LINE L1 0 6582 5985 5 790 1470 218 74 66 chr11 26938210 26938451 -94905405 - Lx5 LINE L1 0 7050 6813 5 790 288 53 0 0 chr11 26938451 26938489 -94905367 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 5 790 1470 218 74 66 chr11 26938489 26938718 -94905138 - Lx5 LINE L1 -238 6812 6577 5 790 3799 108 68 17 chr11 26938743 26939386 -94904470 + RMER17B LTR ERVK 3 678 -280 5 790 430 143 126 35 chr11 26939365 26939452 -94904404 + RMER17B LTR ERVK 864 958 0 5 790 2176 72 3 44 chr11 26940256 26940576 -94903280 - L1_Mus2 LINE L1 0 6566 6260 5 790 565 273 37 15 chr11 26940635 26940824 -94903032 - MLT1A1 LTR MaLR 0 408 202 5 790 536 340 20 0 chr11 26941031 26941181 -94902675 - RSINE1 SINE B4 -12 153 1 5 790 299 181 43 0 chr11 26942269 26942363 -94901493 + (TA)n Simple_repeat Simple_repeat 1 98 0 5 790 1303 188 108 8 chr11 26942497 26942819 -94901037 - RLTR41 LTR ERV1 -56 390 1 5 790 280 342 45 0 chr11 26942964 26943075 -94900781 - Lx8 LINE L1 -185 7288 7173 5 790 569 279 44 0 chr11 26943177 26943360 -94900496 - Lx8 LINE L1 -469 7004 6814 5 790 3803 42 0 0 chr11 26944103 26944557 -94899299 + L1Md_F2 LINE L1 6129 6582 0 5 790 557 195 177 57 chr11 26945325 26945483 -94898373 + RLTR41 LTR ERV1 1 177 -269 5 790 287 250 28 57 chr11 26945500 26945606 -94898250 + RLTR9A LTR ERVK 266 368 0 5 790 378 253 0 0 chr11 26945606 26945701 -94898155 - Lx7 LINE L1 -232 7464 7370 5 790 1175 188 5 0 chr11 26945701 26945925 -94897931 + Lx6 LINE L1 6225 6449 -1011 5 790 1678 201 55 8 chr11 26947276 26947637 -94896219 + ORR1C1 LTR MaLR 1 378 0 5 790 402 21 0 0 chr11 26948004 26948051 -94895805 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 790 5285 121 11 61 chr11 26949746 26950775 -94893081 + L1VL4 LINE L1 67 1034 -2525 5 790 1955 46 0 0 chr11 26950775 26951013 -94892843 + L1Md_F2 LINE L1 6344 6581 -1 5 790 5106 89 18 15 chr11 26951013 26951677 -94892179 + L1VL4 LINE L1 1035 1698 -1861 5 790 1260 84 0 0 chr11 26952023 26952286 -94891570 + (GAA)n Simple_repeat Simple_repeat 1 263 0 5 790 18547 165 20 16 chr11 26952290 26956896 -94886960 + Lx2 LINE L1 2051 6641 -356 5 790 1368 137 0 0 chr11 26956898 26957110 -94886746 + Lx2 LINE L1 6775 6986 -11 5 790 687 147 17 17 chr11 26957158 26957276 -94886580 - B1_Mus1 SINE Alu -5 143 26 5 790 374 286 83 89 chr11 26957276 26957326 -94886530 - ID_B1 SINE B4 -4 219 53 5 790 318 80 0 0 chr11 26957333 26957383 -94886473 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 5 790 1140 82 7 0 chr11 26957391 26957538 -94886318 - B1_Mus1 SINE Alu 0 148 1 5 790 910 225 18 9 chr11 26957663 26957887 -94885969 + URR1A DNA MER1_type 1 226 0 5 790 1902 142 6 61 chr11 26958486 26958830 -94885026 + ORR1A4 LTR MaLR 5 329 0 5 790 396 200 0 0 chr11 26959025 26959105 -94884751 + Lx7 LINE L1 7609 7688 -8 5 790 402 241 63 0 chr11 26959159 26959238 -94884618 + PB1D7 SINE Alu 24 107 -13 5 790 193 262 116 23 chr11 26959306 26959392 -94884464 + L3 LINE CR1 4390 4483 -6 5 790 414 286 31 31 chr11 26959737 26959867 -94883989 - RSINE1 SINE B4 -6 159 30 5 790 253 411 44 39 chr11 26960150 26960355 -94883501 - LTR16E2 LTR ERVL -92 476 271 5 790 9100 113 3 47 chr11 26960501 26960620 -94883236 + L1_Mus1 LINE L1 4412 4528 -1355 5 790 1043 58 64 21 chr11 26960620 26960761 -94883095 + B1_Mus2 SINE Alu 1 147 0 5 790 9100 92 9 25 chr11 26960761 26962847 -94881009 + L1_Mus1 LINE L1 4529 6565 -2 5 790 418 348 55 22 chr11 26962864 26963231 -94880625 + L1M5 LINE L1 4012 4383 -1763 5 790 1612 21 21 0 chr11 26963231 26963418 -94880438 + B2_Mm1t SINE B2 2 192 -1 5 790 588 300 102 39 chr11 26963419 26963901 -94879955 + L1M5 LINE L1 4413 4924 -1222 5 790 237 119 0 0 chr11 26964010 26964052 -94879804 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 790 266 265 73 6 chr11 26964087 26964200 -94879656 + ORR1E LTR MaLR 1 118 -276 5 790 973 303 47 11 chr11 26964655 26964929 -94878927 - B4A SINE B4 0 292 9 5 790 7323 23 0 0 chr11 26964929 26965751 -94878105 - RLTR13B2 LTR ERVK 0 822 1 5 790 4476 39 1 0 chr11 26966073 26966746 -94877110 - L1Md_F2 LINE L1 -427 6155 5482 5 790 3527 52 7 0 chr11 26966746 26967185 -94876671 + L1Md_F2 LINE L1 6140 6581 -1 5 790 358 153 0 75 chr11 26967584 26967690 -94876166 - RMER17C LTR ERVK -128 282 185 5 790 2648 125 46 9 chr11 26967779 26968216 -94875640 - Lx LINE L1 -5 6649 6197 5 790 265 311 104 1 chr11 26968598 26968737 -94875119 - MLT1A1 LTR MaLR -2 465 252 5 790 1134 88 0 13 chr11 26968765 26968915 -94874941 + B1_Mus1 SINE Alu 1 148 0 5 790 192 25 0 91 chr11 26968915 26968959 -94874897 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 790 278 241 202 0 chr11 26969024 26969103 -94874753 - MLT1A1 LTR MaLR -313 95 1 5 790 4631 87 3 6 chr11 26971089 26971740 -94872116 - L1Md_F2 LINE L1 -10 6572 5924 5 790 285 29 0 0 chr11 26972039 26972073 -94871783 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 790 24 0 0 0 chr11 26973664 26973688 -94870168 + AT_rich Low_complexity Low_complexity 1 24 0 5 790 438 69 0 0 chr11 26973875 26973933 -94869923 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 5 790 6901 118 25 13 chr11 26973942 26975027 -94868829 - Lx3B LINE L1 -5 6968 5871 5 790 559 321 105 17 chr11 26975207 26975559 -94868297 + L2a LINE L2 3040 3422 -4 5 790 5156 12 0 0 chr11 26976117 26976692 -94867164 + L1Md_T LINE L1 6008 6582 0 6 790 25 51 0 0 chr11 26976739 26976778 -94867078 + AT_rich Low_complexity Low_complexity 1 39 0 6 790 443 293 75 4 chr11 26976783 26977023 -94866833 - L1MA6 LINE L1 -29 6271 6015 6 790 261 257 68 0 chr11 26977183 26977257 -94866599 - ID4_ SINE ID -3 80 2 6 790 697 245 14 0 chr11 26978340 26978487 -94865369 + B1_Mur1 SINE Alu 1 149 0 6 790 21 57 0 0 chr11 26979083 26979118 -94864738 + AT_rich Low_complexity Low_complexity 1 35 0 6 790 21 36 0 0 chr11 26979660 26979688 -94864168 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 242 288 17 17 chr11 26979762 26979822 -94864034 - RSINE1 SINE B4 -87 78 19 6 790 426 244 51 25 chr11 26980097 26980215 -94863641 - MT2A LTR ERVL -314 219 99 6 790 1233 41 0 0 chr11 26980273 26980420 -94863436 + B1_Mus1 SINE Alu 2 148 0 6 790 180 111 0 0 chr11 26980420 26980447 -94863409 + (A)n Simple_repeat Simple_repeat 1 27 0 6 790 513 182 0 0 chr11 26980448 26980536 -94863320 - MT2A LTR ERVL -445 88 1 6 790 1112 68 0 20 chr11 26980719 26980869 -94862987 + B1_Mm SINE Alu 1 147 0 6 790 264 122 0 0 chr11 26980870 26980911 -94862945 + (GAA)n Simple_repeat Simple_repeat 2 42 0 6 790 200 267 0 0 chr11 26983473 26983518 -94860338 + CT-rich Low_complexity Low_complexity 4 48 0 6 790 1267 74 5 82 chr11 26983888 26984095 -94859761 - L1_Mus1 LINE L1 -2 6565 6375 6 790 1119 85 0 0 chr11 26984101 26984242 -94859614 - B1_Mus1 SINE Alu -7 141 1 6 790 21 36 0 0 chr11 26984292 26984320 -94859536 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 22 35 0 0 chr11 26984820 26984849 -94859007 + AT_rich Low_complexity Low_complexity 1 29 0 6 790 1602 135 14 3 chr11 26984851 26985133 -94858723 - Lx2 LINE L1 0 6997 6713 6 790 477 68 137 0 chr11 26985133 26985206 -94858650 + 5S rRNA rRNA 9 91 -30 6 790 1977 226 78 112 chr11 26985287 26986624 -94857232 - RMER1B Other Other -55 1011 16 6 790 4163 86 10 23 chr11 26987142 26987175 -94856681 - L1_Mus3 LINE L1 -1 6637 6611 6 790 1772 144 9 51 chr11 26987175 26987511 -94856345 + RLTRETN_Mm LTR ERVK 1 322 0 6 790 4163 86 10 23 chr11 26987511 26988084 -94855772 - L1_Mus3 LINE L1 -28 6610 6039 6 790 216 0 0 0 chr11 26988225 26988249 -94855607 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 790 327 319 25 0 chr11 26988284 26988403 -94855453 - Lx9 LINE L1 -206 7438 7317 6 790 262 98 0 38 chr11 26988409 26988462 -94855394 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 6 790 337 335 29 54 chr11 26988548 26988753 -94855103 - Lx9 LINE L1 -451 7193 6994 6 790 1341 23 29 0 chr11 26989119 26989294 -94854562 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 790 22 35 0 0 chr11 26990837 26990866 -94852990 + AT_rich Low_complexity Low_complexity 1 29 0 6 790 366 285 50 50 chr11 26991603 26991762 -94852094 - RLTR14 LTR ERV1 0 382 224 6 790 1271 251 182 30 chr11 26991906 26992374 -94851482 - RMER20B LTR ERVK -79 548 10 6 790 200 258 16 0 chr11 26992406 26992468 -94851388 + G-rich Low_complexity Low_complexity 6 68 0 6 790 183 129 0 0 chr11 26992564 26992595 -94851261 + (TGG)n Simple_repeat Simple_repeat 1 31 0 6 790 604 320 35 67 chr11 26992822 26993144 -94850712 - RLTR14-int LTR ERV1 0 5317 5007 6 790 1723 157 11 84 chr11 26993144 26993499 -94850357 - ORR1A4 LTR MaLR 0 329 1 6 790 604 320 35 67 chr11 26993499 26993608 -94850248 - RLTR14-int LTR ERV1 -311 5006 4900 6 790 1555 184 142 9 chr11 26994230 26994554 -94849302 + ORR1B2 LTR MaLR 1 367 0 6 790 672 161 40 8 chr11 26994554 26994636 -94849220 + RLTR14-int LTR ERV1 2100 2182 -3135 6 790 216 0 0 0 chr11 26994636 26994660 -94849196 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6 790 672 161 40 8 chr11 26994660 26994702 -94849154 + RLTR14-int LTR ERV1 2183 2228 -3089 6 790 488 312 88 71 chr11 26994962 26995226 -94848630 - RLTR14-int LTR ERV1 -1664 3653 3382 6 790 4307 144 23 108 chr11 26995226 26996211 -94847645 - RLTR13D6 LTR ERVK 0 902 1 6 790 488 312 88 71 chr11 26996211 26996422 -94847434 - RLTR14-int LTR ERV1 -1936 3381 3170 6 790 927 0 0 0 chr11 26996943 26997046 -94846810 + (TTCCC)n Simple_repeat Simple_repeat 2 104 0 6 790 432 0 0 0 chr11 26997046 26997093 -94846763 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 790 461 324 5 9 chr11 26997548 26997763 -94846093 - RLTR6-int LTR ERV1 -3908 3870 3657 6 790 597 52 0 0 chr11 26999237 26999314 -94844542 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 790 3169 68 2 0 chr11 26999409 26999804 -94844052 + MTA_Mm LTR MaLR 1 396 0 6 790 189 0 0 0 chr11 26999979 27000000 -94843856 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 790 477 0 0 0 chr11 27000016 27000069 -94843787 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 791 215 64 128 0 chr11 27000910 27000957 -94842899 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 2 791 25 0 0 0 chr11 27001031 27001056 -94842800 + AT_rich Low_complexity Low_complexity 1 25 0 3 791 234 0 0 0 chr11 27001294 27001320 -94842536 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 791 186 208 226 0 chr11 27001630 27001683 -94842173 + L3b LINE CR1 173 237 -245 5 791 201 193 53 0 chr11 27001930 27001987 -94841869 + A-rich Low_complexity Low_complexity 6 65 0 6 791 279 41 40 20 chr11 27002941 27002991 -94840865 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 7 791 5781 147 29 3 chr11 27002993 27004588 -94839268 - Lx LINE L1 -1 6653 5023 8 791 846 114 0 0 chr11 27004587 27004710 -94839146 - L1VL4 LINE L1 -6129 173 51 9 791 233 324 0 0 chr11 27006669 27006737 -94837119 + GA-rich Low_complexity Low_complexity 4 71 0 1 791 228 260 103 13 chr11 27007795 27007873 -94835983 - B3A SINE B2 -113 85 1 1 791 242 286 29 0 chr11 27007900 27007970 -94835886 - ID4 SINE ID -8 75 4 1 791 298 345 87 22 chr11 27008129 27008405 -94835451 - Charlie4a DNA MER1_type -199 309 16 1 791 346 305 136 81 chr11 27009865 27010298 -94833558 - L1MC4a LINE L1 -461 7581 7125 1 791 262 288 58 29 chr11 27010337 27010509 -94833347 - L1MC4a LINE L1 -863 7019 6843 1 791 257 287 62 21 chr11 27010702 27010798 -94833058 - MER58A DNA MER1_type -119 105 6 1 791 254 331 118 0 chr11 27011011 27011180 -94832676 + Lx8 LINE L1 7091 7279 -194 1 791 1428 175 68 140 chr11 27011701 27012100 -94831756 + RMER19B LTR ERVK 1 370 -532 1 791 1655 172 157 6 chr11 27012106 27012450 -94831406 + RMER19B LTR ERVK 501 896 -6 1 791 22 35 0 0 chr11 27012875 27012904 -94830952 + AT_rich Low_complexity Low_complexity 1 29 0 1 791 2283 167 21 3 chr11 27013958 27014337 -94829519 - MTC LTR MaLR -35 386 1 1 791 613 325 32 23 chr11 27015445 27015662 -94828194 - ID_B1 SINE B4 0 224 6 2 791 300 287 37 9 chr11 27015800 27015909 -94827947 - LTR40b LTR ERVL -12 450 339 2 791 7145 77 3 0 chr11 27015922 27016900 -94826956 - L1_Mus1 LINE L1 0 6567 5587 2 791 258 264 10 81 chr11 27017090 27017189 -94826667 - LTR40b LTR ERVL -335 127 36 2 791 305 303 58 74 chr11 27017231 27017420 -94826436 - L1MD LINE L1 -1837 4309 4124 2 791 465 19 0 0 chr11 27017428 27017482 -94826374 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 791 303 28 0 0 chr11 27017482 27017517 -94826339 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 791 6707 92 19 2 chr11 27017908 27019310 -94824546 - L1_Mus2 LINE L1 -5 6561 5138 2 791 11929 102 9 7 chr11 27019307 27021149 -94822707 + L1_Mus2 LINE L1 3281 5125 -758 2 791 209 125 0 24 chr11 27021181 27021222 -94822634 + (CAAAAA)n Simple_repeat Simple_repeat 5 44 0 2 791 238 368 11 22 chr11 27021349 27021438 -94822418 + RSINE1 SINE B4 66 153 -12 2 791 3118 238 45 33 chr11 27022543 27022812 -94821044 + L1_Mur3 LINE L1 243 528 -7184 2 791 260 70 23 0 chr11 27022812 27022855 -94821001 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3 791 3118 238 45 33 chr11 27022855 27023502 -94820354 + L1_Mur3 LINE L1 529 1170 -6542 2 791 32231 101 14 14 chr11 27023502 27025919 -94817937 + L1Md_F2 LINE L1 189 2601 -3282 3 791 1224 216 54 45 chr11 27025919 27026273 -94817583 - RLTR10D LTR ERVK 0 359 3 3 791 32231 78 3 8 chr11 27026273 27030245 -94813611 + L1Md_F2 LINE L1 2602 6558 -24 3 791 1693 130 119 10 chr11 27030245 27030556 -94813300 + IAPLTR4 LTR ERVK 1 345 0 3 791 10949 40 29 6 chr11 27030556 27031976 -94811880 + IAPLTR4_I LTR ERVK 19 1470 0 3 791 293 179 0 120 chr11 27031976 27032076 -94811780 + MMERVK10C-int LTR ERVK 869 952 -6629 3 791 1047 214 113 66 chr11 27032187 27032633 -94811223 + RMER16-int LTR ERVK 251 619 -4787 3 791 408 195 93 0 chr11 27032678 27032796 -94811060 + ETnERV2-int LTR ERVK 1721 1849 -5557 3 791 293 273 0 83 chr11 27032807 27032915 -94810941 + ETnERV2-int LTR ERVK 2454 2552 -4854 3 791 5292 66 1 1 chr11 27032932 27033708 -94810148 + L1_Mur2 LINE L1 1214 1991 -3892 3 791 2146 118 18 6 chr11 27033709 27034042 -94809814 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 791 443 86 0 228 chr11 27034042 27034178 -94809678 + IAPEz-int LTR ERVK 8 112 -6369 3 791 243 321 0 0 chr11 27034178 27034234 -94809622 + RLTR27 LTR ERVK 220 275 -34 4 791 9232 103 97 24 chr11 27034234 27036664 -94807192 + IAPEz-int LTR ERVK 168 2774 -3707 3 791 2959 22 0 0 chr11 27036662 27037019 -94806837 + IAPEz-int LTR ERVK 4001 4357 -2124 3 791 5235 74 33 12 chr11 27037010 27037765 -94806091 + IAPEz-int LTR ERVK 5709 6479 -2 3 791 2146 118 18 6 chr11 27037767 27038100 -94805756 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 791 18229 73 5 0 chr11 27038100 27040674 -94803182 + L1_Mm LINE L1 1987 4571 -1312 4 791 4314 133 25 75 chr11 27040670 27041470 -94802386 - L1VL2 LINE L1 -2006 1609 795 4 791 891 37 0 0 chr11 27041470 27041579 -94802277 - B1_Mus1 SINE Alu -1 147 39 4 791 329 147 74 74 chr11 27041512 27041593 -94802263 - RLTR25B LTR ERVK -519 509 429 4 791 4314 133 25 75 chr11 27041593 27042278 -94801578 - L1VL2 LINE L1 -2006 794 96 4 791 5240 77 1 7 chr11 27042351 27043055 -94800801 + L1Md_F2 LINE L1 5882 6581 -1 4 791 25 0 0 0 chr11 27043816 27043841 -94800015 + AT_rich Low_complexity Low_complexity 1 25 0 4 791 213 128 26 0 chr11 27043842 27043881 -94799975 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 4 791 447 19 0 0 chr11 27043889 27043941 -94799915 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 791 221 354 171 4 chr11 27044262 27044543 -94799313 - L2 LINE L2 -838 2581 2254 4 791 599 286 118 28 chr11 27045408 27045865 -94797991 - L1_Rod LINE L1 -35 5812 5315 5 791 760 330 46 2 chr11 27045864 27046299 -94797557 - L1M2 LINE L1 -922 5221 4768 5 791 396 294 18 29 chr11 27046708 27046829 -94797027 - B3 SINE B2 -7 209 92 5 791 3122 52 7 0 chr11 27046831 27047235 -94796621 - L1_Mus2 LINE L1 -223 6343 5937 5 791 1981 70 0 4 chr11 27047235 27047494 -94796362 + L1_Mus2 LINE L1 6309 6566 0 5 791 218 32 0 31 chr11 27047497 27047529 -94796327 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 791 590 270 1 1 chr11 27047531 27047664 -94796192 - B3 SINE B2 -62 133 1 5 791 693 207 27 0 chr11 27048318 27048468 -94795388 - Lx4A LINE L1 -2 7056 6903 5 791 260 278 200 0 chr11 27048990 27049080 -94794776 + LTR16B2 LTR ERVL 355 462 0 5 791 1772 110 96 10 chr11 27049096 27049399 -94794457 - ORR1A4 LTR MaLR 0 329 1 5 791 1943 279 63 42 chr11 27049645 27050433 -94793423 - Lx8 LINE L1 -2 7471 6667 5 791 401 319 0 74 chr11 27050459 27050599 -94793257 + ID_B1 SINE B4 87 216 -8 6 791 206 32 32 0 chr11 27050599 27050630 -94793226 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 791 205 196 0 19 chr11 27050700 27050752 -94793104 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 791 22 0 0 0 chr11 27051292 27051314 -94792542 + AT_rich Low_complexity Low_complexity 1 22 0 6 791 2018 163 69 19 chr11 27052118 27052493 -94791363 - ORR1B1 LTR MaLR 0 394 1 6 791 31 26 0 0 chr11 27053296 27053334 -94790522 + AT_rich Low_complexity Low_complexity 1 38 0 6 791 342 293 30 0 chr11 27053630 27053729 -94790127 + RSINE1 SINE B4 17 118 -47 6 791 3634 141 54 23 chr11 27053730 27054142 -94789714 - RMER6A LTR ERVK 0 756 320 6 791 660 26 0 0 chr11 27054142 27054220 -94789636 + (TC)n Simple_repeat Simple_repeat 1 78 0 6 791 3634 141 54 23 chr11 27054220 27054470 -94789386 - RMER6A LTR ERVK -437 319 75 6 791 297 0 0 0 chr11 27054531 27054564 -94789292 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 791 292 311 36 45 chr11 27054597 27054708 -94789148 + B4 SINE B4 6 115 -177 7 791 278 229 0 45 chr11 27054763 27054873 -94788983 + T-rich Low_complexity Low_complexity 2 106 0 7 791 28 48 0 0 chr11 27054951 27054993 -94788863 + AT_rich Low_complexity Low_complexity 1 42 0 7 791 568 238 97 153 chr11 27055840 27056273 -94787583 + RMER2 LTR ERV1 1 549 -18 7 791 298 318 15 15 chr11 27057022 27057156 -94786700 + MuRRS4-int LTR ERV1 1300 1433 -3630 7 791 262 159 0 0 chr11 27057329 27057373 -94786483 + MuRRS4-int LTR ERV1 2029 2072 -5484 7 791 266 368 21 12 chr11 27057795 27058037 -94785819 + MuRRS4-int LTR ERV1 3950 4193 -3408 7 791 408 200 0 0 chr11 27058037 27058122 -94785734 + (TA)n Simple_repeat Simple_repeat 1 85 0 7 791 627 81 0 0 chr11 27058123 27058209 -94785647 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 7 791 365 231 42 23 chr11 27058210 27058372 -94785484 + MuRRS4-int LTR ERV1 4353 4453 -3325 7 791 1284 307 21 13 chr11 27058725 27059200 -94784656 + MuRRS4-int LTR ERV1 3476 3954 -1109 7 791 2281 104 3 0 chr11 27059224 27059542 -94784314 - ORR1A2 LTR MaLR -8 319 1 7 791 478 276 115 9 chr11 27060683 27060917 -94782939 + MuRRS4-int LTR ERV1 7328 7561 -217 7 791 269 116 23 0 chr11 27060917 27060960 -94782896 - ORR1A3 LTR MaLR 0 326 283 7 791 238 286 0 0 chr11 27061106 27061176 -94782680 + T-rich Low_complexity Low_complexity 1 70 0 8 791 206 386 29 36 chr11 27061384 27061521 -94782335 - MIRm SINE MIR -124 152 17 8 791 474 18 0 0 chr11 27061781 27061836 -94782020 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 791 966 34 0 0 chr11 27061836 27061953 -94781903 + (GA)n Simple_repeat Simple_repeat 1 118 0 8 791 706 291 111 15 chr11 27061987 27062249 -94781607 + B4 SINE B4 2 288 -4 8 791 887 271 80 105 chr11 27062721 27063170 -94780686 - RLTR12B LTR ERVK -44 484 47 8 791 295 326 3 34 chr11 27063408 27063511 -94780345 - PB1D7 SINE Alu 0 120 19 8 791 24449 119 57 15 chr11 27063729 27069405 -94774451 + L1_Mus2 LINE L1 206 6566 0 8 791 5441 99 22 12 chr11 27069450 27070971 -94772885 + L1VL2 LINE L1 291 1826 -1789 8 791 350 281 0 0 chr11 27071111 27071200 -94772656 - PB1D10 SINE Alu -2 115 27 8 791 25 0 0 0 chr11 27072267 27072292 -94771564 + AT_rich Low_complexity Low_complexity 1 25 0 9 791 243 88 0 0 chr11 27072392 27072426 -94771430 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 9 791 1014 73 0 0 chr11 27072428 27072564 -94771292 + (GAA)n Simple_repeat Simple_repeat 3 138 0 9 791 23 0 0 0 chr11 27072592 27072615 -94771241 + AT_rich Low_complexity Low_complexity 1 23 0 9 791 336 360 58 14 chr11 27072622 27072760 -94771096 - RSINE1 SINE B4 -15 150 7 9 791 21 0 0 0 chr11 27073326 27073347 -94770509 + AT_rich Low_complexity Low_complexity 1 21 0 9 791 23 54 0 0 chr11 27073879 27073916 -94769940 + AT_rich Low_complexity Low_complexity 1 37 0 9 791 1063 35 27 34 chr11 27074136 27074282 -94769574 + RLTR45 LTR ERVK 338 482 0 9 791 4284 59 107 14 chr11 27074282 27074915 -94768941 + RLTR45-int LTR ERVK 1 692 -6552 9 791 1056 65 0 0 chr11 27075213 27075351 -94768505 + RLTR45-int LTR ERVK 681 818 -6426 9 791 11476 39 36 9 chr11 27076136 27077978 -94765878 + RLTR45-int LTR ERVK 1322 3212 -4032 9 791 3782 83 30 26 chr11 27077948 27078553 -94765303 + RLTR45-int LTR ERVK 3380 3986 -3258 9 791 7846 46 2 5 chr11 27078546 27079557 -94764299 + RLTR45-int LTR ERVK 5065 6072 -1172 9 791 2027 107 10 3 chr11 27079579 27079879 -94763977 + RLTR13B1 LTR ERVK 207 508 -385 9 791 7355 46 0 3 chr11 27079879 27080794 -94763062 + RLTR45-int LTR ERVK 6333 7244 0 9 791 2557 76 31 3 chr11 27080794 27081149 -94762707 + RLTR45 LTR ERVK 1 365 -117 9 791 195 100 0 0 chr11 27083038 27083068 -94760788 + (T)n Simple_repeat Simple_repeat 1 30 0 9 791 482 338 140 0 chr11 27083078 27083300 -94760556 - MLT1A0 LTR MaLR 0 365 113 1 791 479 325 62 26 chr11 27083298 27083491 -94760365 + MTEa LTR MaLR 22 221 -158 1 791 303 396 52 54 chr11 27083491 27083739 -94760117 + MT2A LTR ERVL 22 461 -72 1 791 711 311 104 28 chr11 27083809 27084097 -94759759 + MTE-int LTR MaLR 901 1210 -370 1 791 444 215 44 68 chr11 27085101 27085293 -94758563 + RLTR43A LTR ERVK 201 364 0 1 791 956 146 0 105 chr11 27085503 27085694 -94758162 + RMER6A LTR ERVK 586 756 0 1 791 271 310 63 7 chr11 27086144 27086287 -94757569 + RLTR42-int LTR ERVK 1642 1792 -3730 1 791 480 231 38 19 chr11 27086308 27086467 -94757389 + RodERV21-int LTR ERV1 1003 1164 -3827 1 791 1958 206 22 27 chr11 27086476 27086761 -94757095 + RodERV21-int LTR ERV1 1675 1967 -3024 1 791 2252 112 16 0 chr11 27086761 27087083 -94756773 - ORR1A2 LTR MaLR 0 327 1 1 791 1958 206 22 27 chr11 27087083 27087242 -94756614 + RodERV21-int LTR ERV1 1968 2117 -2874 1 791 1583 205 20 40 chr11 27087242 27087695 -94756161 - RMER17C LTR ERVK -519 439 16 1 791 2371 218 43 42 chr11 27087698 27088301 -94755555 + RodERV21-int LTR ERV1 2113 2716 -2275 1 791 387 0 0 0 chr11 27088439 27088482 -94755374 + (A)n Simple_repeat Simple_repeat 1 43 0 1 791 273 228 203 45 chr11 27088656 27088789 -94755067 - RNLTR23 LTR ERVK 0 642 489 1 791 3366 43 2 0 chr11 27089154 27089549 -94754307 + MTA_Mm LTR MaLR 1 396 0 1 791 9290 29 5 0 chr11 27089549 27090642 -94753214 + MTA_Mm-int LTR MaLR 1 1098 0 1 791 3352 43 2 0 chr11 27090642 27091037 -94752819 + MTA_Mm LTR MaLR 1 396 0 1 791 251 263 10 78 chr11 27091167 27091270 -94752586 - RMER3D-int LTR ERVK -561 6845 6750 1 791 1976 302 40 49 chr11 27091415 27092432 -94751424 - RNERVK23-int LTR ERVK -404 7813 6806 1 791 2683 113 9 14 chr11 27092449 27092872 -94750984 - BGLII LTR ERVK 0 421 1 1 791 3045 209 34 39 chr11 27092873 27093803 -94750053 - RMER3D-int LTR ERVK -1 2841 1916 1 791 2323 190 85 63 chr11 27093813 27094483 -94749373 - RMER3D-int LTR ERVK -1163 1679 470 1 791 729 49 88 47 chr11 27094509 27094680 -94749176 + CT-rich Low_complexity Low_complexity 3 180 0 1 791 304 137 0 161 chr11 27094682 27094712 -94749144 - RMER3D-int LTR ERVK -5147 2097 2071 1 791 1469 22 0 11 chr11 27094712 27094894 -94748962 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 791 550 157 137 8 chr11 27094894 27095034 -94748822 - RMER3D-int LTR ERVK -2259 583 431 1 791 539 204 65 40 chr11 27095005 27095204 -94748652 - RMER3D-int LTR ERVK -2006 836 633 1 791 700 208 0 44 chr11 27095222 27095428 -94748428 - RMER3D-int LTR ERVK -1994 848 652 1 791 544 94 0 0 chr11 27095444 27095531 -94748325 - RMER3D-int LTR ERVK -2278 564 489 1 791 2998 70 22 2 chr11 27095940 27096353 -94747503 - BGLII LTR ERVK 0 421 1 1 791 307 298 66 33 chr11 27096359 27096633 -94747223 - RNERVK23-int LTR ERVK -1429 6788 6506 1 791 1062 281 48 50 chr11 27096749 27097370 -94746486 - RNERVK23-int LTR ERVK -1880 6337 5718 1 791 6728 254 8 16 chr11 27097376 27099098 -94744758 - RNERVK23-int LTR ERVK -2467 5750 4042 1 791 2514 61 55 0 chr11 27099098 27099425 -94744431 + ORR1A1 LTR MaLR 1 345 -1 1 791 9664 95 11 6 chr11 27099425 27100862 -94742994 + ORR1A1-int LTR MaLR 1 1445 -347 1 791 740 103 0 17 chr11 27100848 27100966 -94742890 + ORR1A1-int LTR MaLR 1677 1792 0 1 791 2884 58 0 0 chr11 27100966 27101312 -94742544 + ORR1A1 LTR MaLR 1 346 0 1 791 7208 291 42 56 chr11 27101313 27104578 -94739278 - RNERVK23-int LTR ERVK -4172 4045 828 1 791 5381 52 13 10 chr11 27104866 27105578 -94738278 + ORR1A1-int LTR MaLR 1079 1792 0 1 791 1983 73 77 0 chr11 27105578 27105852 -94738004 + ORR1A1 LTR MaLR 1 295 -51 1 791 890 209 28 5 chr11 27105878 27106094 -94737762 - RNERVK23-int LTR ERVK -7678 539 319 1 791 425 271 42 66 chr11 27106369 27106535 -94737321 - RNLTR23 LTR ERVK 0 642 481 1 791 6961 62 32 4 chr11 27108034 27108938 -94734918 + RLTR13B3 LTR ERVK 1 929 0 1 791 986 175 46 34 chr11 27108996 27109233 -94734623 + RodERV21-int LTR ERV1 4562 4801 -190 1 791 433 274 9 9 chr11 27109242 27109349 -94734507 + RMER4B LTR ERVK 345 451 -134 1 791 247 119 0 0 chr11 27109421 27109463 -94734393 + RMER21B LTR ERV1 358 399 -443 1 791 254 338 0 72 chr11 27109597 27109680 -94734176 + RMER21A LTR ERV1 758 834 -113 1 791 21 0 0 0 chr11 27110100 27110121 -94733735 + AT_rich Low_complexity Low_complexity 1 21 0 1 791 605 264 85 10 chr11 27111487 27111686 -94732170 + B3 SINE B2 3 216 0 1 791 2638 126 2 54 chr11 27112320 27112377 -94731479 - MTB_Mm LTR MaLR -1 406 365 1 791 1114 51 0 7 chr11 27112377 27112516 -94731340 + B1_Mus1 SINE Alu 2 139 -9 1 791 315 0 0 0 chr11 27112516 27112551 -94731305 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 791 2638 126 2 54 chr11 27112551 27112920 -94730936 - MTB_Mm LTR MaLR -43 364 2 1 791 601 268 94 3 chr11 27112940 27113281 -94730575 + L1MC LINE L1 3003 3374 -2772 1 791 911 266 84 75 chr11 27113385 27113800 -94730056 + RLTR23 LTR ERV1 8 426 -4 1 791 2063 53 7 57 chr11 27114534 27114833 -94729023 - L1_Mus2 LINE L1 0 6566 6283 1 791 2933 225 71 140 chr11 27114894 27115975 -94727881 - RMER1A Other Other -3 1027 21 1 791 1659 272 13 50 chr11 27115976 27116529 -94727327 - RMER1B Other Other -553 513 4 1 791 253 283 0 0 chr11 27116735 27116788 -94727068 - MTD LTR MaLR -309 110 58 1 791 858 264 77 61 chr11 27116821 27116970 -94726886 - MTC-int LTR MaLR -4 1254 1100 1 791 527 232 77 35 chr11 27116970 27117113 -94726743 + B1_Mur2 SINE Alu 1 149 0 1 791 858 264 77 61 chr11 27117113 27117342 -94726514 - MTC-int LTR MaLR -159 1099 870 1 791 209 250 0 0 chr11 27118165 27118209 -94725647 + G-rich Low_complexity Low_complexity 6 49 0 1 791 528 251 90 57 chr11 27119246 27119457 -94724399 + LTRIS5 LTR ERV1 230 447 0 1 791 1341 222 130 33 chr11 27120762 27121225 -94722631 - RMER2 LTR ERV1 -16 551 2 1 791 1111 92 79 6 chr11 27121225 27121390 -94722466 + B2_Mm2 SINE B2 1 177 -18 1 791 242 91 0 64 chr11 27121390 27121437 -94722419 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 791 314 316 35 56 chr11 27121961 27122083 -94721773 - MLT1C LTR MaLR -6 499 340 1 791 2484 109 164 0 chr11 27122083 27122540 -94721316 + RLTR47_MM LTR ERV1 1 532 0 1 791 314 318 77 46 chr11 27122540 27122611 -94721245 - MLT1C LTR MaLR -150 355 280 1 791 1943 166 27 8 chr11 27122648 27123019 -94720837 + ORR1C1 LTR MaLR 1 378 0 1 791 1143 205 112 14 chr11 27123019 27123296 -94720560 + ORR1C1-int LTR MaLR 1 304 -1205 1 791 7225 57 8 4 chr11 27123325 27124689 -94719167 - L1Md_F2 LINE L1 -12 6570 5199 1 791 11036 76 1 0 chr11 27124692 27126228 -94717628 + L1Md_F2 LINE L1 3662 5198 -685 1 791 3302 243 67 51 chr11 27126229 27126739 -94717117 + ORR1C1-int LTR MaLR 389 919 -451 1 791 3362 98 98 41 chr11 27126739 27127272 -94716584 + LTRIS2 LTR ERV1 1 563 -1 1 791 3302 243 67 51 chr11 27127272 27127727 -94716129 + ORR1C1-int LTR MaLR 920 1370 0 1 791 873 235 258 0 chr11 27127727 27127987 -94715869 + ORR1C1 LTR MaLR 1 327 -57 1 791 2401 133 10 32 chr11 27128112 27128409 -94715447 + MTB LTR MaLR 7 301 -99 1 791 3151 12 0 0 chr11 27128409 27128755 -94715101 + ORR1A0 LTR MaLR 1 346 0 1 791 2401 133 10 32 chr11 27128755 27128860 -94714996 + MTB LTR MaLR 302 400 0 1 791 2046 128 16 36 chr11 27128989 27129353 -94714503 + RLTR9A LTR ERVK 1 357 -11 1 791 304 137 0 38 chr11 27129748 27129801 -94714055 + ORR1C1 LTR MaLR 328 378 0 1 791 257 288 98 102 chr11 27129801 27130003 -94713853 - MLT1B LTR MaLR -183 207 7 1 791 2819 108 2 0 chr11 27130797 27131196 -94712660 - MTB LTR MaLR 0 400 1 1 791 617 76 11 0 chr11 27131283 27131375 -94712481 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 1 791 256 33 0 0 chr11 27131376 27131406 -94712450 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 792 528 110 138 0 chr11 27132337 27132446 -94711410 + L1_Mus3 LINE L1 6515 6638 0 1 792 401 281 41 87 chr11 27133097 27133315 -94710541 - RLTR23 LTR ERV1 0 430 223 1 792 569 321 78 21 chr11 27133641 27133883 -94709973 - RMER15 LTR ERVL -15 560 305 1 792 261 0 0 0 chr11 27133920 27133949 -94709907 + (T)n Simple_repeat Simple_repeat 1 29 0 1 792 291 67 21 43 chr11 27134074 27134121 -94709735 + MTC LTR MaLR 8 53 -368 1 792 702 245 64 6 chr11 27134123 27134279 -94709577 + MTD LTR MaLR 255 419 0 1 792 30 0 0 0 chr11 27134288 27134318 -94709538 + AT_rich Low_complexity Low_complexity 1 30 0 1 792 21 71 0 0 chr11 27134944 27134986 -94708870 + AT_rich Low_complexity Low_complexity 1 42 0 1 792 408 286 16 16 chr11 27135550 27135671 -94708185 + MLT1A LTR MaLR 4 124 -250 1 792 537 299 65 18 chr11 27135723 27135801 -94708055 + B4 SINE B4 5 90 -202 1 792 295 252 42 59 chr11 27135801 27135919 -94707937 + PB1D10 SINE Alu 1 116 -1 1 792 213 270 0 25 chr11 27136568 27136731 -94707125 + (CATA)n Simple_repeat Simple_repeat 2 160 0 1 792 264 277 95 68 chr11 27136731 27136878 -94706978 - RMER12 LTR ERVK -472 850 700 1 792 307 328 78 11 chr11 27137008 27137187 -94706669 - Lx8 LINE L1 -208 7265 7075 1 792 627 271 7 14 chr11 27137194 27137340 -94706516 + B1_Mur1 SINE Alu 3 147 -2 1 792 270 207 34 11 chr11 27137346 27137434 -94706422 + GA-rich Low_complexity Low_complexity 3 92 0 1 792 563 285 119 0 chr11 27137449 27137642 -94706214 + B3 SINE B2 1 216 0 1 792 400 347 72 51 chr11 27137733 27137970 -94705886 + L1MDa LINE L1 102 343 -6290 1 792 278 312 39 13 chr11 27139617 27139773 -94704083 + MuLV-int LTR ERV1 1549 1708 -3355 1 792 2327 356 67 43 chr11 27139899 27141237 -94702619 + MuLV-int LTR ERV1 1983 3347 -4259 1 792 279 0 0 0 chr11 27141237 27141268 -94702588 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 792 2327 356 67 43 chr11 27141268 27143122 -94700734 + MuLV-int LTR ERV1 3348 5250 -2356 1 792 396 0 0 0 chr11 27143697 27143741 -94700115 + (TTA)n Simple_repeat Simple_repeat 3 46 0 1 792 382 283 11 11 chr11 27143978 27144071 -94699785 + RMER13A LTR ERVK 146 238 -622 1 792 1797 209 63 55 chr11 27144045 27144444 -94699412 + RMER13A LTR ERVK 459 860 0 1 792 504 322 175 37 chr11 27144466 27144924 -94698932 + L1MD LINE L1 3838 4358 -1788 1 792 6353 202 26 28 chr11 27144939 27146338 -94697518 + Lx5 LINE L1 5647 7043 -7 1 792 381 285 78 17 chr11 27146487 27146719 -94697137 + L1MD LINE L1 4781 5026 -1120 1 792 199 241 0 36 chr11 27147298 27147354 -94696502 - L3 LINE CR1 -3559 930 877 1 792 615 315 21 42 chr11 27147629 27147831 -94696025 - B3A SINE B2 -9 186 6 1 792 31 26 0 0 chr11 27149003 27149041 -94694815 + AT_rich Low_complexity Low_complexity 1 38 0 1 792 246 247 11 21 chr11 27149121 27149216 -94694640 + A-rich Low_complexity Low_complexity 4 97 0 1 792 713 178 7 44 chr11 27149258 27149393 -94694463 + B1_Mur3 SINE Alu 19 148 -1 1 792 1094 285 83 26 chr11 27149428 27149886 -94693970 - Lx7 LINE L1 -368 7328 6845 1 792 3325 224 47 18 chr11 27150255 27151043 -94692813 - Lx7 LINE L1 -442 7254 6444 1 792 732 223 7 14 chr11 27151043 27151184 -94692672 - RLTR20C LTR ERVK 0 578 439 1 792 1153 195 78 66 chr11 27151183 27151502 -94692354 - RLTR20C LTR ERVK -211 323 1 1 792 3076 153 68 48 chr11 27151502 27151835 -94692021 - MYSERV16_I-int LTR ERVK -8 2318 1982 1 792 6496 120 20 15 chr11 27151835 27152768 -94691088 + RLTR13D5 LTR ERVK 1 930 -93 1 792 1281 92 5 21 chr11 27152768 27152957 -94690899 - B2_Mm1a SINE B2 -6 187 2 1 792 6496 120 20 15 chr11 27152957 27153041 -94690815 + RLTR13D5 LTR ERVK 931 1022 -1 1 792 3076 150 68 47 chr11 27153041 27153077 -94690779 - MYSERV16_I-int LTR ERVK -345 1981 1954 1 792 1445 77 67 10 chr11 27153077 27153333 -94690523 + L1Md_F2 LINE L1 6343 6582 0 1 792 3076 156 68 50 chr11 27153333 27153759 -94690097 - MYSERV16_I-int LTR ERVK -373 1953 1534 1 792 342 0 0 0 chr11 27153759 27153797 -94690059 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 1 792 3520 239 63 92 chr11 27153797 27154317 -94689539 - MYSERV16_I-int LTR ERVK -1385 941 790 1 792 1069 58 0 0 chr11 27154317 27154455 -94689401 + L1_Mus1 LINE L1 6430 6567 0 1 792 3520 196 43 74 chr11 27154455 27155357 -94688499 - MYSERV16_I-int LTR ERVK -1449 1393 2 1 792 3382 30 5 0 chr11 27155508 27155902 -94687954 + MTA_Mm LTR MaLR 1 396 0 1 792 910 195 142 47 chr11 27156535 27156831 -94687025 - RLTR20A2 LTR ERVK -254 324 1 1 792 1480 264 57 6 chr11 27156831 27157357 -94686499 - Lx7 LINE L1 -1247 6449 5897 1 792 2140 291 14 81 chr11 27157366 27158172 -94685684 - Lx5 LINE L1 -190 6860 6109 2 792 4870 116 51 48 chr11 27158254 27159116 -94684740 + RLTR13D6 LTR ERVK 1 865 -37 2 792 427 298 65 54 chr11 27159139 27159419 -94684437 - RMER20A LTR ERVK -135 381 30 2 792 315 0 0 0 chr11 27159470 27159505 -94684351 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 792 3067 213 34 2 chr11 27159506 27160648 -94683208 - L1_Mur2 LINE L1 -3868 2009 892 2 792 4109 203 65 23 chr11 27160835 27161624 -94682232 - Lx7 LINE L1 -1897 5799 4970 1 792 2045 142 0 47 chr11 27161624 27161965 -94681891 + ORR1A4 LTR MaLR 5 329 0 2 792 4109 205 40 30 chr11 27161965 27162307 -94681549 - Lx7 LINE L1 -911 4969 4649 1 792 506 243 215 36 chr11 27162321 27162398 -94681458 + Lx7 LINE L1 7269 7377 -319 2 792 483 63 0 0 chr11 27162398 27162461 -94681395 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 792 506 243 215 36 chr11 27162461 27162746 -94681110 + Lx7 LINE L1 7378 7695 -1 2 792 530 247 53 7 chr11 27162777 27162928 -94680928 + MTEb LTR MaLR 215 372 -7 2 792 459 0 0 0 chr11 27164092 27164143 -94679713 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2 792 236 61 41 0 chr11 27165929 27165978 -94677878 + L1_Mus4 LINE L1 6584 6634 -2 2 792 915 80 0 0 chr11 27165983 27166108 -94677748 + (GAAA)n Simple_repeat Simple_repeat 3 127 0 2 792 555 16 0 0 chr11 27167100 27167164 -94676692 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 2 792 483 349 57 71 chr11 27167165 27167242 -94676614 - B4 SINE B4 -15 277 211 2 792 3317 151 11 4 chr11 27167242 27167768 -94676088 - Lx4A LINE L1 -9 7049 6520 2 792 483 349 57 71 chr11 27167768 27167971 -94675885 - B4 SINE B4 -82 210 2 2 792 407 341 134 51 chr11 27167984 27168512 -94675344 - HAL1 LINE L1 -255 2252 1681 2 792 590 317 61 0 chr11 27168581 27168761 -94675095 + MER2 DNA MER2_type 155 345 0 2 792 38 39 0 0 chr11 27169246 27169298 -94674558 + AT_rich Low_complexity Low_complexity 1 52 0 2 792 617 301 16 21 chr11 27169973 27170163 -94673693 + Lx8 LINE L1 7169 7357 -116 2 792 353 392 62 36 chr11 27170368 27170643 -94673213 + MLT1F LTR MaLR 26 307 -241 2 792 322 79 16 16 chr11 27170658 27170722 -94673134 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 2 792 406 323 34 72 chr11 27170724 27170931 -94672925 + MLT1F LTR MaLR 325 523 -25 2 792 342 0 0 0 chr11 27171187 27171225 -94672631 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 792 204 368 118 38 chr11 27171314 27171661 -94672195 + L2a LINE L2 2966 3340 -86 2 792 351 65 0 0 chr11 27171731 27171777 -94672079 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2 792 459 0 0 0 chr11 27172419 27172470 -94671386 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 792 305 325 0 0 chr11 27172869 27172960 -94670896 + ID4_ SINE ID 3 93 -59 2 792 1005 156 161 5 chr11 27174165 27174358 -94669498 - URR1A DNA MER1_type -2 224 2 2 792 396 0 0 0 chr11 27174368 27174412 -94669444 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 792 480 18 0 0 chr11 27174964 27175021 -94668835 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 792 771 287 167 72 chr11 27175026 27175445 -94668411 - MT2B LTR ERVL -60 541 2 2 792 28 48 0 0 chr11 27176151 27176193 -94667663 + AT_rich Low_complexity Low_complexity 1 42 0 2 792 327 304 95 8 chr11 27176419 27176545 -94667311 - Lx8 LINE L1 -291 7182 7046 2 792 13026 120 29 9 chr11 27176542 27179386 -94664470 + L1VL2 LINE L1 60 2968 -647 2 792 3248 80 5 2 chr11 27179384 27179821 -94664035 - L1_Mus2 LINE L1 -75 5808 5371 2 792 5633 107 1 0 chr11 27179821 27180625 -94663231 + L1_Mus2 LINE L1 5762 6566 0 2 792 989 190 2 3 chr11 27180686 27180912 -94662944 + L1_Mm LINE L1 3270 3494 -2392 2 792 2859 60 26 43 chr11 27180912 27181330 -94662526 + RLTR9F LTR ERVK 1 411 -4 2 792 7901 181 102 84 chr11 27181333 27185766 -94658090 + RLTR45-int LTR ERVK 3 5444 -1800 2 792 1010 251 19 18 chr11 27185771 27186155 -94657701 + RLTR45-int LTR ERVK 6222 6429 -977 2 792 383 139 27 14 chr11 27186363 27186436 -94657420 + RLTR45-int LTR ERVK 7331 7404 -2 2 792 2852 79 10 10 chr11 27186437 27186844 -94657012 + RLTR9F LTR ERVK 1 407 -8 2 792 13965 143 14 11 chr11 27186848 27189221 -94654635 + L1_Mus3 LINE L1 3485 5858 -780 2 792 366 80 0 0 chr11 27189221 27189271 -94654585 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 792 6181 122 55 27 chr11 27189271 27190022 -94653834 + L1_Mus3 LINE L1 5859 6638 0 2 792 450 328 156 10 chr11 27190029 27190343 -94653513 - Lx8 LINE L1 -416 7057 6698 2 792 417 103 0 0 chr11 27190859 27190927 -94652929 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 792 189 0 0 0 chr11 27190975 27190996 -94652860 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 792 330 287 96 0 chr11 27191500 27191615 -94652241 - RLTR28B LTR ERVL 0 481 356 2 792 1259 278 91 13 chr11 27191874 27192249 -94651607 - Lx7 LINE L1 -394 7302 6899 2 792 3746 152 26 77 chr11 27192592 27193424 -94650432 - L1_Mur2 LINE L1 -1896 3981 3192 2 792 2593 139 2 14 chr11 27193418 27193855 -94650001 + L1_Mur2 LINE L1 3950 4381 -1496 2 792 580 281 48 123 chr11 27193855 27193983 -94649873 - RMER19C LTR ERVK -589 313 180 2 792 393 22 0 0 chr11 27193983 27194029 -94649827 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 792 580 262 22 63 chr11 27194029 27194171 -94649685 - RMER19C LTR ERVK -374 237 1 2 792 279 0 0 0 chr11 27194289 27194320 -94649536 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 792 259 301 185 10 chr11 27194367 27194783 -94649073 - L1M2 LINE L1 -3523 2620 2132 2 792 276 255 150 26 chr11 27195748 27195901 -94647955 - Lx8 LINE L1 -1 7472 7301 2 792 356 233 23 11 chr11 27195965 27196052 -94647804 - Lx8 LINE L1 -416 7057 6970 2 792 1109 290 54 0 chr11 27196075 27196392 -94647464 - Lx8 LINE L1 -577 6896 6563 2 792 8854 59 9 1 chr11 27196448 27197593 -94646263 + L1_Mm LINE L1 4399 5552 -331 2 792 417 339 36 41 chr11 27197593 27197627 -94646229 - RLTR22_Mus LTR ERVK -1129 193 155 2 792 8068 47 4 0 chr11 27197627 27198619 -94645237 + L1Md_F2 LINE L1 5587 6582 0 2 792 1214 71 0 0 chr11 27198619 27198778 -94645078 - RLTR22_Mus LTR ERVK -1650 158 1 2 792 630 242 75 50 chr11 27198778 27198935 -94644921 + RLTR41 LTR ERV1 275 436 -10 2 792 1057 253 60 4 chr11 27199372 27199622 -94644234 - Lx8 LINE L1 -960 6513 6250 2 792 189 261 99 35 chr11 27200011 27200107 -94643749 - MIRb SINE MIR -98 170 66 2 792 1047 347 53 31 chr11 27200214 27200704 -94643152 + MLT1E1A LTR MaLR 4 504 -176 2 792 239 368 19 0 chr11 27200835 27200941 -94642915 + L2a LINE L2 2602 2709 -710 2 792 733 290 171 22 chr11 27201166 27201610 -94642246 - RMER15 LTR ERVL -3 572 21 2 792 2133 70 0 0 chr11 27201926 27202199 -94641657 - L1_Mus1 LINE L1 -1 6566 6294 2 792 240 35 0 0 chr11 27202207 27202236 -94641620 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 792 1506 166 18 4 chr11 27202273 27202295 -94641561 - L1_Mur1 LINE L1 -1122 4764 4743 2 792 189 0 0 0 chr11 27202295 27202316 -94641540 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 792 1506 166 18 4 chr11 27202316 27202571 -94641285 - L1_Mur1 LINE L1 -1144 4742 4484 2 792 223 338 42 56 chr11 27202672 27202816 -94641040 + L2a LINE L2 3280 3421 -5 2 792 428 189 0 126 chr11 27203327 27203454 -94640402 + MT2B LTR ERVL 154 264 -337 2 792 857 70 0 0 chr11 27203341 27203456 -94640400 + B1_Mus1 SINE Alu 1 115 -33 2 792 432 0 0 0 chr11 27203456 27203504 -94640352 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 792 303 146 0 0 chr11 27203876 27203931 -94639925 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 792 1566 251 99 30 chr11 27204592 27205096 -94638760 + RLTR20B3 LTR ERVK 24 562 -15 2 792 2439 57 38 0 chr11 27205976 27206293 -94637563 + L1_Mus1 LINE L1 6239 6567 0 2 792 212 176 39 19 chr11 27207264 27207316 -94636540 + (TCTA)n Simple_repeat Simple_repeat 3 55 0 2 792 656 143 0 9 chr11 27207480 27207586 -94636270 + RLTR28B LTR ERVL 1 105 -419 2 792 327 25 0 0 chr11 27207816 27207856 -94636000 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 792 201 74 0 0 chr11 27207943 27207970 -94635886 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 792 765 121 6 48 chr11 27208133 27208298 -94635558 - RMER17B LTR ERVK -491 467 310 2 792 632 36 0 0 chr11 27208458 27208542 -94635314 + L1Md_T LINE L1 6499 6582 0 2 792 23 33 0 0 chr11 27208563 27208593 -94635263 + AT_rich Low_complexity Low_complexity 1 30 0 2 792 8485 22 0 0 chr11 27208593 27210054 -94633802 - L1Md_T LINE L1 -11 6571 5111 2 792 1977 180 8 32 chr11 27210063 27210442 -94633414 + RLTR28B LTR ERVL 99 468 -13 2 792 547 276 124 17 chr11 27211312 27211489 -94632367 + B3 SINE B2 21 216 0 2 792 312 342 81 75 chr11 27211559 27211720 -94632136 - RSINE1 SINE B4 -3 162 1 2 792 2444 278 111 53 chr11 27211746 27212705 -94631151 - RMER1A Other Other -16 1014 1 2 792 374 314 246 25 chr11 27212717 27212916 -94630940 - RMER1A Other Other -787 243 1 2 792 2813 16 0 0 chr11 27212927 27213249 -94630607 - RLTRETN_Mm LTR ERVK 0 322 1 2 792 39549 34 13 9 chr11 27213249 27218073 -94625783 - MMETn-int LTR ERVK 0 4844 1 2 792 2783 22 0 0 chr11 27218073 27218395 -94625461 - RLTRETN_Mm LTR ERVK 0 322 1 2 792 988 257 80 80 chr11 27218401 27218701 -94625155 - RMER1B Other Other -722 344 45 2 792 339 44 0 0 chr11 27219781 27219826 -94624030 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 792 5968 183 36 44 chr11 27220727 27221876 -94621980 + RLTR21 LTR ERVK 1 1127 -445 2 792 247 80 60 0 chr11 27221876 27221926 -94621930 + (TATG)n Simple_repeat Simple_repeat 3 55 0 2 792 5968 183 36 44 chr11 27221926 27222063 -94621793 + RLTR21 LTR ERVK 1128 1276 -296 2 792 431 255 9 29 chr11 27222039 27222144 -94621712 + RMER12 LTR ERVK 743 845 -477 2 792 734 183 0 61 chr11 27222423 27222603 -94621253 - Lx LINE L1 -10 6644 6476 2 792 744 93 13 44 chr11 27222729 27222887 -94620969 + (TCTA)n Simple_repeat Simple_repeat 4 156 0 2 792 1987 276 128 48 chr11 27222889 27223953 -94619903 - Lx6 LINE L1 -26 7434 6066 2 792 1077 61 0 45 chr11 27224127 27224238 -94619618 - B1_Mm SINE Alu 0 147 38 2 792 1643 175 37 78 chr11 27224238 27224648 -94619208 + RLTR9C LTR ERVK 1 393 0 2 792 1077 61 0 45 chr11 27224648 27224690 -94619166 - B1_Mm SINE Alu -110 37 1 2 792 23 0 0 0 chr11 27225380 27225403 -94618453 + AT_rich Low_complexity Low_complexity 1 23 0 2 792 27 62 0 0 chr11 27225880 27225928 -94617928 + AT_rich Low_complexity Low_complexity 1 48 0 2 792 26 64 0 0 chr11 27225960 27226007 -94617849 + AT_rich Low_complexity Low_complexity 1 47 0 2 792 3302 30 8 0 chr11 27226220 27226613 -94617243 - MTA_Mm LTR MaLR 0 396 1 2 792 676 247 0 13 chr11 27226887 27227039 -94616817 + B1_Mur4 SINE Alu 1 150 0 2 792 427 281 82 0 chr11 27227399 27227534 -94616322 + L1_Rod LINE L1 2333 2478 -3369 2 792 31 26 0 0 chr11 27227661 27227699 -94616157 + AT_rich Low_complexity Low_complexity 1 38 0 2 792 193 336 63 63 chr11 27228687 27228830 -94615026 - MER5B DNA MER1_type -24 154 12 2 792 31 58 0 0 chr11 27228963 27229015 -94614841 + AT_rich Low_complexity Low_complexity 1 52 0 2 792 245 75 0 24 chr11 27229344 27229385 -94614471 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2 792 246 32 0 0 chr11 27229439 27229470 -94614386 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 792 331 297 87 44 chr11 27229955 27230138 -94613718 + L1M2 LINE L1 5206 5396 -747 3 792 232 317 41 0 chr11 27230179 27230302 -94613554 + L1M2 LINE L1 5648 5775 -516 3 792 257 353 87 5 chr11 27230373 27230592 -94613264 + L1MB1 LINE L1 5866 6102 -66 3 792 5150 208 77 6 chr11 27233380 27235072 -94608784 + Lx5 LINE L1 5222 7041 -9 3 792 1885 315 83 89 chr11 27235420 27236538 -94607318 + Lx5 LINE L1 5936 7047 -3 3 792 1058 287 25 94 chr11 27236728 27236963 -94606893 + MTE2a LTR MaLR 1 209 -170 3 792 3788 52 21 0 chr11 27236963 27237428 -94606428 + MT2C_Mm LTR ERVL 1 475 0 3 792 1058 287 25 94 chr11 27237428 27237596 -94606260 + MTE2a LTR MaLR 210 376 -3 3 792 22 70 0 0 chr11 27238035 27238078 -94605778 + AT_rich Low_complexity Low_complexity 1 43 0 3 792 1102 89 0 0 chr11 27238954 27239100 -94604756 - B1_Mus2 SINE Alu 0 147 2 3 792 889 141 8 0 chr11 27239182 27239343 -94604513 + ORR1A3 LTR MaLR 192 386 -8 3 792 3597 161 67 51 chr11 27239348 27240079 -94603777 + ORR1A3-int LTR MaLR 2 744 -1219 3 792 2252 164 53 36 chr11 27240093 27240543 -94603313 + ORR1A3-int LTR MaLR 1506 1963 0 3 792 1809 163 3 61 chr11 27240543 27240889 -94602967 + ORR1A3 LTR MaLR 1 326 0 3 792 351 0 0 0 chr11 27241033 27241072 -94602784 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 792 1130 71 0 0 chr11 27241076 27241217 -94602639 - B1_Mus2 SINE Alu -6 141 1 3 792 267 241 33 54 chr11 27241219 27241311 -94602545 - RMER15 LTR ERVL -425 150 61 3 792 1482 274 60 47 chr11 27243982 27244450 -94599406 - RMER19C LTR ERVK 0 611 138 3 792 628 119 18 0 chr11 27245000 27245109 -94598747 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 3 792 1129 88 0 0 chr11 27245316 27245463 -94598393 + B1_Mus1 SINE Alu 2 148 0 3 792 239 203 60 45 chr11 27245748 27245815 -94598041 - MER89 LTR ERV1 -484 75 8 3 792 195 333 53 13 chr11 27245858 27245934 -94597922 + MIRc SINE MIR 83 161 -107 3 792 314 213 187 0 chr11 27246832 27246907 -94596949 + RMER12 LTR ERVK 1 89 -1233 3 792 288 312 11 0 chr11 27246907 27247000 -94596856 + RMER12 LTR ERVK 225 318 -1530 3 792 2731 251 79 67 chr11 27247014 27247801 -94596055 + RMER13A LTR ERVK 14 809 -51 3 792 363 299 74 68 chr11 27247839 27248433 -94595423 + RMER12 LTR ERVK 381 1010 -394 3 792 821 233 123 103 chr11 27248553 27248689 -94595167 + RMER12 LTR ERVK 988 1107 -215 3 792 202 55 0 53 chr11 27248689 27248727 -94595129 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 792 821 233 123 103 chr11 27248727 27248891 -94594965 + RMER12 LTR ERVK 1108 1294 -28 3 792 1036 328 86 0 chr11 27250607 27250933 -94592923 + RMER1B Other Other 1 354 -712 3 792 485 135 27 0 chr11 27250936 27251010 -94592846 + RMER17B LTR ERVK 1 76 -882 3 792 1112 128 6 6 chr11 27251010 27251190 -94592666 - L1_Mus2 LINE L1 -659 5224 5045 3 792 7246 85 5 8 chr11 27251190 27252520 -94591336 + L1_Mus2 LINE L1 5241 6566 0 3 792 4998 137 35 37 chr11 27252539 27253438 -94590418 + RMER17B LTR ERVK 62 958 0 3 792 743 333 77 25 chr11 27253486 27253574 -94590282 + RMER1A Other Other 45 132 -898 3 792 216 0 0 0 chr11 27253574 27253598 -94590258 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 792 743 333 77 25 chr11 27253598 27253795 -94590061 + RMER1A Other Other 133 344 -686 3 792 604 214 16 72 chr11 27253795 27253962 -94589894 + RMER17B LTR ERVK 631 892 -66 3 792 2119 241 73 92 chr11 27253964 27254726 -94589130 + RMER1A Other Other 163 894 -136 3 792 306 0 0 0 chr11 27254726 27254760 -94589096 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 792 2119 241 73 92 chr11 27254760 27254878 -94588978 + RMER1A Other Other 895 1026 -4 3 792 324 0 0 0 chr11 27255182 27255218 -94588638 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 792 414 322 131 40 chr11 27255961 27256411 -94587445 + L1ME3B LINE L1 5582 6072 -168 3 792 25 65 0 0 chr11 27256439 27256485 -94587371 + AT_rich Low_complexity Low_complexity 1 46 0 3 792 287 206 123 26 chr11 27256684 27256810 -94587046 - L1M2 LINE L1 -467 5836 5700 3 792 300 213 0 16 chr11 27256826 27256888 -94586968 + MTD LTR MaLR 1 61 -358 3 12 39029 33 1 3 chr11 27256889 27263056 -94580800 - L1Md_T LINE L1 -2 6580 420 3 793 1158 259 121 27 chr11 27263057 27263387 -94580469 + MTD LTR MaLR 51 411 -8 3 793 249 268 18 84 chr11 27263504 27263658 -94580198 - L1P5 LINE L1 -637 5519 5376 3 793 1635 183 9 64 chr11 27263658 27264003 -94579853 + ORR1A3 LTR MaLR 1 326 0 3 793 249 268 18 84 chr11 27264003 27264015 -94579841 - L1P5 LINE L1 -781 5375 5364 3 793 21 36 0 0 chr11 27264234 27264262 -94579594 + AT_rich Low_complexity Low_complexity 1 28 0 3 793 309 309 83 5 chr11 27264270 27264462 -94579394 - L1M3 LINE L1 -1753 4387 4181 3 793 8385 94 1 0 chr11 27264822 27266698 -94577158 + L1_Mus1 LINE L1 4690 6567 0 3 793 885 296 85 14 chr11 27268147 27268636 -94575220 - Lx3C LINE L1 -1076 5900 5343 3 793 774 0 0 0 chr11 27268643 27268729 -94575127 + (TTTCC)n Simple_repeat Simple_repeat 5 90 0 3 793 198 0 0 0 chr11 27268729 27268751 -94575105 + (TCCC)n Simple_repeat Simple_repeat 2 23 0 3 793 640 171 0 26 chr11 27268750 27268906 -94574950 + CT-rich Low_complexity Low_complexity 2 153 0 3 793 253 281 40 40 chr11 27268918 27269018 -94574838 - RLTR25B LTR ERVK 0 1028 929 3 793 908 18 0 9 chr11 27269071 27269182 -94574674 + (TTC)n Simple_repeat Simple_repeat 2 111 0 3 793 376 247 249 35 chr11 27269182 27269454 -94574402 - MTD LTR MaLR -53 366 38 3 793 228 240 0 0 chr11 27269474 27269524 -94574332 + GA-rich Low_complexity Low_complexity 2 51 0 3 793 509 135 0 11 chr11 27269532 27269622 -94574234 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 793 12990 102 12 5 chr11 27269624 27272220 -94571636 - L1VL4 LINE L1 -726 2833 214 3 793 295 279 16 32 chr11 27272223 27272284 -94571572 + polypyrimidine Low_complexity Low_complexity 68 127 0 3 793 1221 92 0 0 chr11 27272284 27272457 -94571399 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 3 793 295 279 16 32 chr11 27272457 27272521 -94571335 + polypyrimidine Low_complexity Low_complexity 4 67 0 3 793 30 59 0 0 chr11 27272577 27272628 -94571228 + AT_rich Low_complexity Low_complexity 1 51 0 3 793 504 260 4 35 chr11 27272715 27272866 -94570990 - B1_Mur2 SINE Alu -3 146 2 3 793 213 121 0 0 chr11 27272919 27272952 -94570904 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 3 793 1269 268 35 16 chr11 27273001 27273433 -94570423 - L1_Mur3 LINE L1 -1795 4085 3646 3 793 366 224 230 0 chr11 27273548 27273700 -94570156 + L1M2 LINE L1 3005 3191 -2952 3 793 312 48 0 0 chr11 27274197 27274239 -94569617 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 3 793 257 287 59 139 chr11 27274287 27274489 -94569367 + MLT1B LTR MaLR 154 339 -51 3 793 1516 161 4 0 chr11 27274830 27275091 -94568765 - L1_Mm LINE L1 -541 5342 5081 3 793 7721 65 11 2 chr11 27275091 27276316 -94567540 + L1_Mus1 LINE L1 5332 6567 0 3 793 674 251 113 16 chr11 27276970 27277156 -94566700 - B3 SINE B2 -5 211 8 3 793 2489 222 59 9 chr11 27277715 27278261 -94565595 - RMER15 LTR ERVL -2 573 1 3 793 629 367 50 12 chr11 27278261 27278519 -94565337 - B4A SINE B4 -24 268 1 3 793 1507 183 90 29 chr11 27278769 27279112 -94564744 - RLTR22_Mur LTR ERVK -24 1824 1461 3 793 439 146 87 0 chr11 27279131 27279234 -94564622 - Lx3A LINE L1 -8 6973 6862 3 793 18237 132 131 4 chr11 27279240 27282574 -94561282 - L1_Mur1 LINE L1 -206 5680 1922 3 793 37969 30 0 1 chr11 27282596 27289454 -94554402 - L1Md_T LINE L1 0 6585 1 3 793 243 128 21 0 chr11 27289455 27289502 -94554354 - MT2B LTR ERVL -25 576 529 3 793 4018 170 17 22 chr11 27289506 27291049 -94552807 - L1_Mur1 LINE L1 -3968 1918 121 3 793 4318 164 93 21 chr11 27291049 27291188 -94552668 - RLTR22_Mur LTR ERVK -370 1478 1341 3 793 570 63 0 0 chr11 27291188 27291267 -94552589 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 793 4318 164 93 21 chr11 27291267 27292041 -94551815 - RLTR22_Mur LTR ERVK -508 1340 500 3 793 5697 74 11 4 chr11 27292041 27292800 -94551056 - L1Md_F2 LINE L1 0 6582 5819 3 793 3790 154 11 12 chr11 27292805 27293785 -94550071 + Lx5 LINE L1 4932 5452 -431 3 793 7426 251 47 58 chr11 27293783 27296930 -94546926 + Lx5 LINE L1 3934 7016 -34 3 793 7020 80 11 30 chr11 27296968 27298257 -94545599 + L1_Mus2 LINE L1 5302 6564 -2 3 793 26 0 0 0 chr11 27298263 27298289 -94545567 + AT_rich Low_complexity Low_complexity 1 26 0 3 793 3342 132 24 13 chr11 27299271 27299818 -94544038 + RLTR1D LTR ERV1 37 589 -16 3 793 288 0 0 0 chr11 27299945 27299977 -94543879 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 793 207 128 0 96 chr11 27300562 27300614 -94543242 + A-rich Low_complexity Low_complexity 1 47 0 3 793 243 0 0 0 chr11 27302403 27302430 -94541426 + (A)n Simple_repeat Simple_repeat 1 27 0 3 793 563 105 19 0 chr11 27302701 27302806 -94541050 + (CATA)n Simple_repeat Simple_repeat 1 107 0 3 793 26 0 0 0 chr11 27303562 27303588 -94540268 + AT_rich Low_complexity Low_complexity 1 26 0 3 793 21 0 0 0 chr11 27303703 27303724 -94540132 + AT_rich Low_complexity Low_complexity 1 21 0 3 793 5185 109 26 8 chr11 27303835 27304626 -94539230 - RLTR13D1 LTR ERVK 0 806 1 3 793 246 62 0 0 chr11 27304710 27304742 -94539114 + (TTA)n Simple_repeat Simple_repeat 1 32 0 3 793 249 204 18 18 chr11 27306396 27306451 -94537405 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 793 806 331 52 15 chr11 27306499 27307262 -94536594 + L1MA5A LINE L1 5055 5887 -410 3 793 21 36 0 0 chr11 27307530 27307558 -94536298 + AT_rich Low_complexity Low_complexity 1 28 0 3 793 547 254 153 11 chr11 27307569 27307752 -94536104 - B3 SINE B2 -7 209 1 3 793 304 348 167 20 chr11 27308039 27308291 -94535565 + B4A SINE B4 3 291 -1 3 793 496 296 140 28 chr11 27308495 27308981 -94534875 - L1M4 LINE L1 -2188 3958 3421 3 793 27 29 0 0 chr11 27309170 27309204 -94534652 + AT_rich Low_complexity Low_complexity 1 34 0 3 793 234 0 0 0 chr11 27309215 27309241 -94534615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 793 532 348 9 56 chr11 27310003 27310216 -94533640 - ID_B1 SINE B4 -20 204 2 3 793 431 246 28 83 chr11 27310451 27310739 -94533117 - L1_Rod LINE L1 -2559 3288 3017 3 793 860 281 91 23 chr11 27310715 27311287 -94532569 - L1_Rod LINE L1 -2686 3161 2551 3 793 369 243 0 0 chr11 27311291 27311365 -94532491 - L1_Rod LINE L1 -3482 2365 2292 3 793 862 236 34 49 chr11 27311392 27311596 -94532260 - ORR1C1 LTR MaLR -70 308 108 3 793 592 161 113 0 chr11 27311596 27311720 -94532136 + RLTR25B LTR ERVK 1 138 -965 3 793 2215 182 43 18 chr11 27311714 27312155 -94531701 + RLTR25B LTR ERVK 321 772 -256 3 793 396 0 0 0 chr11 27312155 27312199 -94531657 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 793 2098 129 195 2 chr11 27312199 27312635 -94531221 + RLTR47_MM LTR ERV1 1 520 -12 3 793 2061 178 14 5 chr11 27312743 27313110 -94530746 + ORR1C1 LTR MaLR 1 370 -8 3 793 3939 225 120 45 chr11 27313110 27314385 -94529471 + ORR1C1-int LTR MaLR 1 1370 0 3 793 816 253 176 11 chr11 27314385 27314657 -94529199 + ORR1C1 LTR MaLR 1 317 -57 3 793 255 61 0 0 chr11 27314657 27314690 -94529166 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 793 1892 111 17 7 chr11 27314774 27315065 -94528791 + MTB LTR MaLR 1 294 -106 4 793 2378 97 72 18 chr11 27315068 27315458 -94528398 - IAPLTR2a LTR ERVK 0 411 1 4 793 6075 43 4 12 chr11 27315460 27316210 -94527646 - IAPEz-int LTR ERVK -2 6479 5736 4 793 2148 76 7 0 chr11 27316209 27316485 -94527371 - IAPEz-int LTR ERVK -4845 1636 1359 4 793 3563 56 1 16 chr11 27316485 27317063 -94526793 - IAPEz-int LTR ERVK -5819 662 168 4 793 227 273 0 0 chr11 27317063 27317107 -94526749 - RLTR27 LTR ERVK -34 275 232 4 793 296 54 0 0 chr11 27317107 27317144 -94526712 - IAPEz-int LTR ERVK -7400 181 145 4 793 227 267 0 0 chr11 27317144 27317189 -94526667 - RLTR27 LTR ERVK -34 275 231 4 793 402 104 0 141 chr11 27317189 27317267 -94526589 - IAPEz-int LTR ERVK -6358 123 57 4 793 480 269 59 23 chr11 27317272 27317334 -94526522 + MTB_Mm LTR MaLR 238 309 -112 4 793 2401 91 72 18 chr11 27317334 27317724 -94526132 - IAPLTR2a LTR ERVK 0 411 1 4 793 673 154 0 0 chr11 27317724 27317834 -94526022 + MTB_Mm LTR MaLR 298 407 0 4 793 256 319 86 38 chr11 27318461 27318647 -94525209 - MLT1C LTR MaLR -257 210 16 4 793 290 45 0 22 chr11 27318973 27319018 -94524838 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 4 793 374 100 17 0 chr11 27319257 27319317 -94524539 + (TCC)n Simple_repeat Simple_repeat 3 63 0 4 793 254 95 24 0 chr11 27319444 27319486 -94524370 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 793 444 19 0 0 chr11 27319597 27319650 -94524206 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 793 2148 245 8 22 chr11 27320031 27320146 -94523710 + Lx5 LINE L1 6561 6673 -377 4 793 1762 169 42 30 chr11 27320146 27320549 -94523307 - RMER17C LTR ERVK -2 408 1 4 793 2148 245 8 22 chr11 27320549 27320922 -94522934 + Lx5 LINE L1 6674 7042 -8 4 793 22 35 0 0 chr11 27320934 27320963 -94522893 + AT_rich Low_complexity Low_complexity 1 29 0 4 793 357 82 0 0 chr11 27321016 27321065 -94522791 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 4 793 224 167 61 0 chr11 27321522 27321588 -94522268 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 4 793 23118 112 125 34 chr11 27322352 27327047 -94516809 + Lx3_Mus LINE L1 209 5590 -296 4 793 6382 93 66 3 chr11 27327047 27327982 -94515874 + L1Md_F2 LINE L1 5588 6581 -1 4 793 6535 112 19 33 chr11 27327988 27329015 -94514841 + Lx3_Mus LINE L1 5783 6794 -215 4 793 354 107 0 0 chr11 27329000 27329056 -94514800 + L1_Mus4 LINE L1 6013 6068 -568 4 793 2367 132 88 17 chr11 27329056 27329393 -94514463 + MT2C_Mm LTR ERVL 1 366 -109 4 793 2286 116 66 97 chr11 27329393 27329890 -94513966 + RLTR45 LTR ERVK 1 482 0 4 793 2367 132 88 17 chr11 27329890 27329961 -94513895 + MT2C_Mm LTR ERVL 367 438 -37 4 793 981 67 30 0 chr11 27329950 27330084 -94513772 + MTA_Mm LTR MaLR 142 279 -117 4 793 247 88 0 0 chr11 27330081 27330115 -94513741 - MTB_Mm-int LTR MaLR -1064 34 1 4 793 735 98 26 136 chr11 27330115 27330148 -94513708 - MTB_Mm LTR MaLR 0 400 368 4 793 3232 36 0 5 chr11 27330148 27330544 -94513312 + L1Md_F3 LINE L1 6191 6584 0 4 793 989 110 25 62 chr11 27330544 27330807 -94513049 - MTB_Mm LTR MaLR -33 367 3 4 793 425 132 0 0 chr11 27330807 27330870 -94512986 + MT2C_Mm LTR ERVL 412 474 -1 4 793 3956 137 0 7 chr11 27330870 27331466 -94512390 + Lx LINE L1 6063 6654 0 4 793 460 311 7 26 chr11 27331578 27331730 -94512126 - MLT1C LTR MaLR -315 152 4 4 793 1569 183 134 17 chr11 27332565 27332916 -94510940 - ORR1B1 LTR MaLR -2 392 1 4 793 22 0 0 0 chr11 27333021 27333043 -94510813 + AT_rich Low_complexity Low_complexity 1 22 0 4 793 38 0 0 0 chr11 27333460 27333498 -94510358 + AT_rich Low_complexity Low_complexity 1 38 0 4 793 22 35 0 0 chr11 27333636 27333665 -94510191 + AT_rich Low_complexity Low_complexity 1 29 0 4 793 381 75 0 0 chr11 27335471 27335524 -94508332 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 793 187 328 68 17 chr11 27335926 27335985 -94507871 + L4 LINE RTE 1058 1119 -910 4 793 200 195 0 0 chr11 27336522 27336563 -94507293 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 4 793 337 318 17 93 chr11 27336614 27336732 -94507124 - RSINE1 SINE B4 -48 117 9 4 793 21 0 0 0 chr11 27336734 27336755 -94507101 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 3394 136 21 0 chr11 27336764 27337285 -94506571 - Lx2 LINE L1 -110 6887 6356 4 793 705 103 19 0 chr11 27337276 27337383 -94506473 + Lx2 LINE L1 6262 6370 -627 4 793 2472 307 99 10 chr11 27337417 27337520 -94506336 - Lx8 LINE L1 -9 7464 7353 4 793 4481 56 2 9 chr11 27337520 27338093 -94505763 - L1Md_F2 LINE L1 0 6582 6014 4 793 2472 307 99 10 chr11 27338093 27338947 -94504909 - Lx8 LINE L1 -121 7352 6422 4 793 28 29 0 0 chr11 27339250 27339285 -94504571 + AT_rich Low_complexity Low_complexity 1 35 0 4 793 3386 28 5 2 chr11 27340318 27340713 -94503143 + MTA_Mm LTR MaLR 1 396 0 4 793 22288 78 8 6 chr11 27340853 27344623 -94499233 - L1Md_F2 LINE L1 -2 6580 2814 4 793 5014 144 22 9 chr11 27344611 27346235 -94497621 - L1Md_F2 LINE L1 -4012 1871 238 4 793 2986 68 0 25 chr11 27346363 27346769 -94497087 + MTA_Mm LTR MaLR 1 396 0 4 793 1084 298 86 66 chr11 27347147 27347844 -94496012 - MER67C LTR ERV1 0 711 1 4 793 192 77 0 0 chr11 27348364 27348390 -94495466 + (CAT)n Simple_repeat Simple_repeat 2 27 0 4 793 325 309 86 40 chr11 27348710 27348885 -94494971 - RLTR41 LTR ERV1 0 446 264 4 793 342 45 0 0 chr11 27350246 27350290 -94493566 + (TGG)n Simple_repeat Simple_repeat 1 44 0 4 793 965 112 14 0 chr11 27350290 27350433 -94493423 - B1_Mus1 SINE Alu -2 146 2 4 793 1827 102 77 12 chr11 27350933 27351260 -94492596 + RLTR9A LTR ERVK 1 348 -20 4 793 271 275 87 11 chr11 27351267 27351359 -94492497 + ORR1E LTR MaLR 80 178 -181 4 793 3361 250 92 38 chr11 27351402 27352399 -94491457 - ORR1C2-int LTR MaLR -429 1534 2 4 793 812 227 247 22 chr11 27352399 27352708 -94491148 - ORR1C2 LTR MaLR -5 379 1 4 793 3170 205 119 67 chr11 27352875 27353732 -94490124 - RMER19B LTR ERVK 0 902 1 4 793 23920 131 15 116 chr11 27353750 27356321 -94487535 + L1_Mus2 LINE L1 361 2843 -3723 4 793 1927 141 51 78 chr11 27356321 27356730 -94487126 - RLTR9B2 LTR ERVK -22 398 1 4 793 23920 131 15 116 chr11 27356730 27360149 -94483707 + L1_Mus2 LINE L1 2844 6148 -418 4 793 1159 271 33 5 chr11 27360845 27361390 -94482466 - Lx6 LINE L1 0 7460 6868 4 793 795 207 20 10 chr11 27361385 27361580 -94482276 - L1_Mur3 LINE L1 -2814 3066 2870 4 793 835 105 8 39 chr11 27361562 27361691 -94482165 + Lx LINE L1 5985 6109 -545 4 793 455 195 8 25 chr11 27361698 27361819 -94482037 - Lx7 LINE L1 -149 7547 7429 4 793 289 241 0 0 chr11 27361807 27361861 -94481995 - Lx6 LINE L1 -316 7144 7091 4 793 2660 113 42 59 chr11 27361871 27362342 -94481514 + Lx LINE L1 6189 6651 -3 4 793 573 180 7 67 chr11 27362363 27362512 -94481344 - L1_Mur3 LINE L1 -3011 2869 2730 4 793 694 294 55 99 chr11 27362512 27362856 -94481000 - RMER12 LTR ERVK 0 1322 994 4 793 597 172 0 0 chr11 27362856 27362978 -94480878 + GA-rich Low_complexity Low_complexity 3 124 0 4 793 257 232 143 92 chr11 27362985 27363258 -94480598 - RMER12 LTR ERVK -189 1215 1119 4 793 1375 235 103 13 chr11 27363323 27363801 -94480055 - RMER12 LTR ERVK -1265 583 36 4 793 3935 194 48 182 chr11 27363805 27363944 -94479912 - L1_Mur3 LINE L1 -3186 2694 2558 4 793 1313 197 54 34 chr11 27363944 27364296 -94479560 + RLTR10D LTR ERVK 1 359 0 4 793 3935 194 48 182 chr11 27364296 27364661 -94479195 - L1_Mur3 LINE L1 -3323 2557 2200 4 793 965 150 0 13 chr11 27364661 27364810 -94479046 + B1_Mm SINE Alu 1 147 0 4 793 3935 194 48 182 chr11 27364810 27365167 -94478689 - L1_Mur3 LINE L1 -3681 2199 2065 4 793 207 69 0 0 chr11 27365167 27365196 -94478660 + (TGG)n Simple_repeat Simple_repeat 1 29 0 4 793 3935 216 54 101 chr11 27365196 27366912 -94476944 - L1_Mur3 LINE L1 -3816 2064 305 4 793 690 325 70 39 chr11 27367309 27367668 -94476188 - ORR1D2 LTR MaLR 0 370 1 4 793 561 42 0 0 chr11 27367797 27367869 -94475987 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 4 793 900 154 0 0 chr11 27367877 27368033 -94475823 + CT-rich Low_complexity Low_complexity 2 157 0 4 793 968 114 0 0 chr11 27368034 27368174 -94475682 - B1_Mus1 SINE Alu 0 148 9 4 793 447 205 54 93 chr11 27368066 27368195 -94475661 - MT2B LTR ERVL -334 267 144 4 793 250 364 39 0 chr11 27369326 27369403 -94474453 - MLT1G LTR MaLR -92 499 420 4 793 2004 60 0 22 chr11 27370485 27370757 -94473099 + LTRIS2 LTR ERV1 299 564 0 4 793 724 308 42 76 chr11 27370966 27371254 -94472602 - B4A SINE B4 -14 278 1 4 793 31 26 0 0 chr11 27371255 27371293 -94472563 + AT_rich Low_complexity Low_complexity 1 38 0 4 793 2232 215 32 51 chr11 27371375 27371804 -94472052 + RLTR20B3 LTR ERVK 21 447 -130 4 793 6123 76 18 2 chr11 27371804 27372598 -94471258 - RLTR13D1 LTR ERVK 0 806 1 4 793 2232 215 32 51 chr11 27372598 27372721 -94471135 + RLTR20B3 LTR ERVK 448 563 -14 4 793 632 340 62 78 chr11 27372675 27373178 -94470678 + MTE-int LTR MaLR 8 502 -1078 4 793 470 296 7 43 chr11 27373266 27373407 -94470449 + B3A SINE B2 1 136 -62 4 793 605 313 158 57 chr11 27373753 27374284 -94469572 + MTE-int LTR MaLR 949 1533 -47 4 793 1127 195 141 3 chr11 27374775 27375079 -94468777 + Lx9 LINE L1 7297 7642 -2 4 793 23 54 0 0 chr11 27375322 27375359 -94468497 + AT_rich Low_complexity Low_complexity 1 37 0 4 793 982 98 8 0 chr11 27375363 27375495 -94468361 + B1_Mus1 SINE Alu 2 134 -14 4 793 231 152 0 0 chr11 27375506 27375552 -94468304 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 793 327 301 114 6 chr11 27375812 27375979 -94467877 + L1ME4a LINE L1 5672 5856 -268 4 793 23 33 0 0 chr11 27376489 27376519 -94467337 + AT_rich Low_complexity Low_complexity 1 30 0 4 793 749 257 60 26 chr11 27376538 27376737 -94467119 + L1MA4 LINE L1 5693 5903 -397 4 793 1840 214 20 62 chr11 27376737 27377176 -94466680 - MTC LTR MaLR 0 421 1 4 793 749 257 60 26 chr11 27377176 27377208 -94466648 + L1MA4 LINE L1 5904 5932 -368 4 793 402 74 0 0 chr11 27377208 27377262 -94466594 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 793 639 0 0 0 chr11 27377794 27377865 -94465991 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 4 793 291 190 0 0 chr11 27377865 27377923 -94465933 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 4 793 21 0 0 0 chr11 27377944 27377965 -94465891 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 366 143 0 0 chr11 27378130 27378193 -94465663 + (TATG)n Simple_repeat Simple_repeat 2 64 0 4 793 563 0 15 0 chr11 27378194 27378261 -94465595 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 4 793 22 35 0 0 chr11 27378970 27378999 -94464857 + AT_rich Low_complexity Low_complexity 1 29 0 4 793 897 190 11 6 chr11 27380278 27380453 -94463403 + RLTR11A2 LTR ERVK 225 400 -127 4 793 2561 101 50 0 chr11 27380458 27380836 -94463020 - L1_Mus3 LINE L1 -6 6632 6236 4 793 4679 94 4 3 chr11 27380836 27381754 -94462102 + L1_Mus3 LINE L1 5293 6213 -425 4 793 24 0 0 0 chr11 27381754 27381778 -94462078 + AT_rich Low_complexity Low_complexity 1 24 0 4 793 319 309 43 0 chr11 27383158 27383252 -94460604 + B4A SINE B4 189 286 -6 4 793 222 62 0 0 chr11 27383290 27383322 -94460534 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 793 21 57 0 0 chr11 27384249 27384284 -94459572 + AT_rich Low_complexity Low_complexity 1 35 0 4 793 349 345 38 42 chr11 27384345 27384557 -94459299 - L1M2 LINE L1 -1168 4975 4765 4 793 7161 102 4 4 chr11 27384997 27386137 -94457719 - L1Md_F2 LINE L1 -2 6580 5441 4 793 27411 95 12 2 chr11 27387055 27392073 -94451783 - L1Md_F2 LINE L1 -443 5440 366 4 793 320 300 117 51 chr11 27392381 27392595 -94451261 - MLT1B LTR MaLR -162 228 1 5 793 1791 179 129 49 chr11 27392943 27393353 -94450503 + RLTR41 LTR ERV1 4 446 0 5 793 231 375 11 0 chr11 27393449 27393537 -94450319 + MTEa LTR MaLR 9 97 -282 5 793 645 299 140 64 chr11 27393606 27393920 -94449936 + MT2A LTR ERVL 189 526 -7 5 794 236 341 48 82 chr11 27394291 27394438 -94449418 - B3A SINE B2 0 198 57 5 794 3090 201 18 5 chr11 27394942 27395511 -94448345 + Lx4A LINE L1 6094 6669 -389 5 794 6322 159 25 14 chr11 27395511 27396611 -94447245 + Lx4A LINE L1 5938 7050 -8 5 794 318 26 0 0 chr11 27396613 27396652 -94447204 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5 794 280 279 29 0 chr11 27396788 27396856 -94447000 + (CGTG)n Simple_repeat Simple_repeat 2 71 0 5 794 181 406 0 0 chr11 27396905 27396974 -94446882 + MIRb SINE MIR 113 181 -87 5 794 1687 130 84 58 chr11 27399105 27399464 -94444392 + RLTR9A LTR ERVK 1 368 0 5 794 443 235 236 25 chr11 27400367 27400524 -94443332 + B3 SINE B2 27 216 0 5 794 270 0 0 0 chr11 27401025 27401055 -94442801 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 794 297 0 0 0 chr11 27401055 27401087 -94442769 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 794 422 338 25 19 chr11 27401102 27401262 -94442594 + B3A SINE B2 1 161 -37 5 794 432 0 0 0 chr11 27401265 27401313 -94442543 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 794 23 33 0 0 chr11 27401322 27401352 -94442504 + AT_rich Low_complexity Low_complexity 1 30 0 5 794 945 160 130 0 chr11 27402214 27402414 -94441442 - URR1A DNA MER1_type 0 226 1 5 794 1587 247 86 39 chr11 27402905 27403414 -94440442 + RMER19C LTR ERVK 79 611 0 5 794 556 277 187 19 chr11 27403549 27403891 -94439965 - L1M3e LINE L1 -3319 3784 3372 5 794 603 0 0 0 chr11 27403891 27403958 -94439898 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 794 556 277 187 19 chr11 27403958 27404101 -94439755 - L1M3e LINE L1 -3732 3371 3218 5 794 492 327 41 41 chr11 27404256 27404549 -94439307 - L1M3e LINE L1 -6737 293 1 5 794 285 164 52 0 chr11 27404615 27404731 -94439125 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 5 794 23 0 0 0 chr11 27405053 27405076 -94438780 + AT_rich Low_complexity Low_complexity 1 23 0 5 794 218 222 19 0 chr11 27405105 27405159 -94438697 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 5 794 319 276 0 13 chr11 27405168 27405245 -94438611 - B4A SINE B4 0 292 217 5 794 1203 245 91 57 chr11 27405262 27405669 -94438187 + MTC LTR MaLR 1 421 0 5 794 366 304 40 23 chr11 27405674 27405849 -94438007 - B3A SINE B2 -18 180 3 5 794 648 262 69 101 chr11 27405893 27406350 -94437506 - RMER4A LTR ERVK -17 568 18 5 794 21 0 0 0 chr11 27406512 27406533 -94437323 + AT_rich Low_complexity Low_complexity 1 21 0 5 794 233 75 25 0 chr11 27408167 27408207 -94435649 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 794 650 43 21 0 chr11 27409199 27409292 -94434564 + (TCTCTG)n Simple_repeat Simple_repeat 6 100 0 5 794 229 326 125 53 chr11 27409303 27409455 -94434401 - RSINE1 SINE B4 0 165 3 5 794 828 326 125 3 chr11 27409545 27409880 -94433976 + Tigger7 DNA MER2_type 2 377 -2114 5 794 253 297 63 90 chr11 27410252 27410267 -94433589 + PB1D9 SINE Alu 10 115 -3 5 794 282 272 213 21 chr11 27410267 27410361 -94433495 + ID_B1 SINE B4 108 219 -5 5 794 20452 120 51 11 chr11 27410569 27416008 -94427848 - L1Md_F2 LINE L1 -2 6580 436 5 794 7028 79 11 32 chr11 27416021 27417240 -94426616 - L1_Mus1 LINE L1 -2 6565 5362 5 794 236 239 181 21 chr11 27417334 27417428 -94426428 - L2a LINE L2 -3 3423 3315 5 794 2983 62 15 13 chr11 27417539 27417934 -94425922 - L1_Mus1 LINE L1 0 6567 6172 5 794 234 91 0 0 chr11 27418371 27418404 -94425452 + (ATG)n Simple_repeat Simple_repeat 2 34 0 5 794 427 292 118 12 chr11 27419798 27419968 -94423888 - MTEb LTR MaLR -7 372 185 5 794 23 0 0 0 chr11 27420271 27420294 -94423562 + AT_rich Low_complexity Low_complexity 1 23 0 5 794 255 31 0 0 chr11 27421776 27421808 -94422048 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 794 871 251 72 16 chr11 27422609 27422821 -94421035 + RMER2 LTR ERV1 1 278 -289 5 794 540 45 0 0 chr11 27422821 27422888 -94420968 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 5 794 871 272 93 75 chr11 27422888 27423154 -94420702 + RMER2 LTR ERV1 279 562 -5 5 794 852 207 77 5 chr11 27423866 27424060 -94419796 - Lx6 LINE L1 -26 7434 7227 5 794 255 323 0 0 chr11 27424481 27424543 -94419313 - MIR3 SINE MIR -33 175 114 5 794 492 18 0 0 chr11 27425767 27425824 -94418032 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 794 2123 198 24 7 chr11 27426153 27426566 -94417290 - MTC LTR MaLR -1 420 1 5 794 24 0 0 0 chr11 27430647 27430671 -94413185 + AT_rich Low_complexity Low_complexity 1 24 0 5 794 180 0 0 0 chr11 27431044 27431064 -94412792 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 5 794 7995 60 1 1 chr11 27433352 27435072 -94408784 - L1Md_F2 LINE L1 0 6582 4863 5 794 35434 43 1 3 chr11 27435073 27440308 -94403548 + L1Md_T LINE L1 271 5589 -297 5 794 8475 31 0 0 chr11 27440309 27441304 -94402552 + L1Md_T LINE L1 5591 6585 0 5 794 1445 65 0 0 chr11 27441304 27441489 -94402367 - L1Md_F2 LINE L1 -1008 4875 4691 5 794 940 144 7 0 chr11 27441731 27441877 -94401979 + B1_Mus1 SINE Alu 2 148 0 5 794 35 0 0 0 chr11 27442316 27442351 -94401505 + AT_rich Low_complexity Low_complexity 1 35 0 5 794 233 172 30 30 chr11 27442709 27442775 -94401081 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 794 1154 328 77 37 chr11 27442781 27443799 -94400057 - Lx9 LINE L1 -126 7518 6310 5 794 207 338 113 0 chr11 27444085 27444227 -94399629 + MIR SINE MIR 91 248 -14 5 794 235 214 168 37 chr11 27444879 27444986 -94398870 + L1MA10 LINE L1 6180 6300 -34 5 794 441 294 78 118 chr11 27445150 27445274 -94398582 - Zaphod DNA Tip100 -886 3145 3045 5 794 2298 145 39 41 chr11 27445274 27445712 -94398144 - Lx3B LINE L1 -4 6969 6533 5 794 441 294 78 118 chr11 27445712 27445934 -94397922 - Zaphod DNA Tip100 -987 3044 2813 5 794 298 212 82 0 chr11 27446866 27446951 -94396905 + RMER6B LTR ERVK 1 92 -369 5 794 769 345 34 30 chr11 27446951 27447423 -94396433 - Lx7 LINE L1 -598 7098 6625 5 794 596 141 50 0 chr11 27447746 27447845 -94396011 + RMER6B LTR ERVK 1 104 -357 5 794 2541 143 33 5 chr11 27447898 27448326 -94395530 + Lx LINE L1 6212 6651 -3 5 794 2526 192 83 125 chr11 27448421 27449300 -94394556 + RMER12B LTR ERVK 1 765 -557 5 794 402 21 0 0 chr11 27449300 27449347 -94394509 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 794 520 243 0 18 chr11 27449349 27449462 -94394394 + RLTR21 LTR ERVK 1306 1416 -156 5 794 1696 277 28 22 chr11 27450076 27450097 -94393759 - Lx6 LINE L1 -5 7455 7439 5 794 4952 79 0 2 chr11 27450097 27450734 -94393122 - L1_Mus2 LINE L1 -1 6565 5930 5 794 1696 277 28 22 chr11 27450734 27451173 -94392683 - Lx6 LINE L1 -22 7438 6992 5 794 456 72 0 0 chr11 27451188 27451257 -94392599 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 5 794 3671 252 52 39 chr11 27451257 27452342 -94391514 - Lx5 LINE L1 -13 7037 5939 5 794 5014 189 12 15 chr11 27452319 27453337 -94390519 - L1_Mur2 LINE L1 -6 5871 4857 5 794 21 57 0 0 chr11 27453737 27453772 -94390084 + AT_rich Low_complexity Low_complexity 1 35 0 5 794 245 167 0 0 chr11 27453825 27453867 -94389989 + B2_Mm2 SINE B2 1 42 -153 5 794 287 274 93 39 chr11 27454114 27454244 -94389612 + RLTR13C2 LTR ERVK 678 863 -39 5 794 7328 176 55 22 chr11 27454279 27455920 -94387936 - L1_Mur2 LINE L1 -1014 4863 3169 5 794 1723 106 64 10 chr11 27455920 27456217 -94387639 + RLTR31_Mur LTR ERVK 1 313 -240 5 794 1502 141 0 24 chr11 27456218 27456465 -94387391 + Lx2 LINE L1 6398 6638 -359 5 794 1221 149 18 9 chr11 27456465 27456689 -94387167 + Lx2 LINE L1 6772 6997 0 5 794 1097 192 4 70 chr11 27456716 27456957 -94386899 + RLTR31_Mur LTR ERVK 323 547 -6 5 794 225 83 0 0 chr11 27456958 27456994 -94386862 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 794 424 221 8 0 chr11 27456996 27457118 -94386738 - MusHAL1 LINE L1 -742 1970 1848 5 794 408 221 0 0 chr11 27457135 27457248 -94386608 + T-rich Low_complexity Low_complexity 5 117 0 5 794 387 56 0 0 chr11 27457250 27457304 -94386552 + (CAT)n Simple_repeat Simple_repeat 3 56 0 5 794 2782 169 6 20 chr11 27457309 27457809 -94386047 - Lx2 LINE L1 -19 6978 6486 5 794 4612 141 27 0 chr11 27457807 27458703 -94385153 - Lx2 LINE L1 -692 6305 5375 5 794 5456 144 53 9 chr11 27458708 27459450 -94384406 + MusHAL1 LINE L1 1199 1953 -759 5 794 245 51 26 0 chr11 27459450 27459489 -94384367 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 794 5456 144 53 9 chr11 27459489 27459758 -94384098 + MusHAL1 LINE L1 1954 2255 -457 5 794 449 196 33 0 chr11 27459754 27459846 -94384010 - MusHAL1 LINE L1 -1125 1587 1493 5 794 735 223 31 0 chr11 27459845 27460074 -94383782 - L1_Mur2 LINE L1 -5825 887 652 5 794 3607 104 7 26 chr11 27460093 27460697 -94383159 - MusHAL1 LINE L1 -1772 940 349 5 794 207 0 0 0 chr11 27461327 27461350 -94382506 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 794 2018 204 80 120 chr11 27462270 27463106 -94380750 + L1_Mur2 LINE L1 1360 2162 -3718 5 794 2203 195 56 28 chr11 27463112 27463688 -94380168 + L1_Mur2 LINE L1 2808 3399 -2481 5 794 231 305 32 90 chr11 27463690 27463845 -94380011 - MER68 LTR ERVL -111 452 307 5 794 1269 222 25 41 chr11 27463845 27464212 -94379644 + L1_Mur2 LINE L1 3559 3919 -1958 5 794 2493 127 7 7 chr11 27464186 27464606 -94379250 + MusHAL1 LINE L1 252 671 -2041 5 794 2800 223 40 4 chr11 27464593 27465274 -94378582 + L1_Mur2 LINE L1 5122 5826 -51 5 794 387 0 0 0 chr11 27466617 27466660 -94377196 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 794 2031 173 108 81 chr11 27467483 27467930 -94375926 - RLTR31_Mm LTR ERVK 0 561 118 5 794 723 44 0 0 chr11 27467930 27468021 -94375835 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 794 2031 173 108 81 chr11 27468021 27468119 -94375737 - RLTR31_Mm LTR ERVK -444 117 1 5 794 253 325 42 0 chr11 27468183 27468349 -94375507 + Charlie2b DNA MER1_type 1776 1948 -834 5 794 29 90 0 0 chr11 27468504 27468582 -94375274 + AT_rich Low_complexity Low_complexity 1 78 0 5 794 907 245 37 12 chr11 27468848 27469092 -94374764 - Lx5 LINE L1 0 7058 6809 5 794 2881 202 92 7 chr11 27469096 27469984 -94373872 - Lx5 LINE L1 -728 6322 5350 5 794 198 103 0 0 chr11 27469984 27470013 -94373843 + (T)n Simple_repeat Simple_repeat 1 29 0 5 794 12443 135 30 11 chr11 27470029 27473030 -94370826 - Lx3C LINE L1 -7 6969 3902 5 794 40317 15 1 6 chr11 27473053 27479232 -94364624 - L1Md_A LINE L1 0 6582 440 5 794 4529 56 2 0 chr11 27479247 27479819 -94364037 + L1_Mm LINE L1 4364 4936 -947 6 794 859 216 18 27 chr11 27479809 27480033 -94363823 - L1VL1 LINE L1 -6119 303 82 6 794 2288 136 12 87 chr11 27480034 27480518 -94363338 - Lx3C LINE L1 -2872 3014 2567 5 794 1127 207 34 4 chr11 27480516 27480778 -94363078 - L1_Mur2 LINE L1 -522 5355 5086 6 794 9155 184 46 38 chr11 27480771 27483057 -94360799 - L1_Mur2 LINE L1 -2469 3408 1117 6 794 831 72 0 0 chr11 27483177 27483288 -94360568 + (TTTTG)n Simple_repeat Simple_repeat 2 112 0 6 794 25 99 0 0 chr11 27483884 27483965 -94359891 + AT_rich Low_complexity Low_complexity 1 81 0 6 794 38 68 0 0 chr11 27484631 27484704 -94359152 + AT_rich Low_complexity Low_complexity 1 73 0 6 794 263 237 41 10 chr11 27485005 27485103 -94358753 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 6 794 1427 285 51 29 chr11 27485701 27486592 -94357264 - L1_Rod LINE L1 -221 5659 4699 6 794 9205 176 20 20 chr11 27487165 27489574 -94354282 - L1VL4 LINE L1 -961 2598 193 6 794 360 0 0 0 chr11 27489665 27489705 -94354151 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 794 653 318 80 36 chr11 27489715 27489989 -94353867 - B4A SINE B4 -3 289 4 6 794 5863 101 24 15 chr11 27490290 27490393 -94353463 + Lx LINE L1 5757 5875 -779 6 794 414 0 0 0 chr11 27490393 27490439 -94353417 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 794 5863 101 24 15 chr11 27490439 27491220 -94352636 + Lx LINE L1 5876 6649 -5 6 794 33 66 0 0 chr11 27491286 27491347 -94352509 + AT_rich Low_complexity Low_complexity 1 61 0 6 794 526 348 79 12 chr11 27492812 27493141 -94350715 - Tigger9b DNA MER2_type -22 602 252 6 794 288 127 73 0 chr11 27493886 27493941 -94349915 - RLTR12A LTR ERVK -505 63 5 6 794 1834 199 25 34 chr11 27494066 27494450 -94349406 - Lx4B LINE L1 -56 7002 6620 6 794 307 237 26 17 chr11 27494644 27494760 -94349096 - Lx9 LINE L1 -4 7640 7524 6 794 3220 255 73 26 chr11 27494837 27496088 -94347768 + Lx9 LINE L1 4606 5956 -1688 6 794 1250 231 199 14 chr11 27496228 27496580 -94347276 - MTC LTR MaLR 0 421 5 6 794 9985 105 14 0 chr11 27497478 27499696 -94344160 - L1_Mus1 LINE L1 -2 6565 4310 6 794 574 293 18 57 chr11 27499720 27499948 -94343908 + RMER15 LTR ERVL 27 245 -330 6 794 752 261 0 0 chr11 27500011 27500176 -94343680 + RMER15 LTR ERVL 363 527 -48 1 794 243 324 27 20 chr11 27500293 27500441 -94343415 + L1MCa LINE L1 110 258 -5787 2 794 339 346 48 90 chr11 27500834 27500901 -94342955 + MLT1B LTR MaLR 114 172 -218 3 794 2687 96 36 10 chr11 27500901 27501291 -94342565 - MTB LTR MaLR 0 400 1 4 794 339 346 48 90 chr11 27501291 27501512 -94342344 + MLT1B LTR MaLR 173 390 0 3 794 368 302 38 61 chr11 27501548 27501672 -94342184 + L1MCa LINE L1 1765 1886 -4865 2 794 1593 58 5 0 chr11 27501672 27501879 -94341977 + L1Md_T LINE L1 6374 6581 -1 5 794 368 302 38 61 chr11 27501879 27502018 -94341838 + L1MCa LINE L1 1887 2022 -4729 2 794 3688 66 20 2 chr11 27502356 27502843 -94341013 - LTRIS2 LTR ERV1 0 564 69 6 794 306 333 78 33 chr11 27502863 27503105 -94340751 + L1MCa LINE L1 2357 2609 -4142 2 794 245 204 34 11 chr11 27503107 27503196 -94340660 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 7 794 3626 189 21 18 chr11 27503250 27504762 -94339094 + Lx4B LINE L1 5149 6768 -290 8 794 2914 124 150 4 chr11 27504762 27505254 -94338602 + LTRIS2 LTR ERV1 1 564 0 9 794 1846 203 13 18 chr11 27505261 27505647 -94338209 - RMER12B LTR ERVK -868 536 153 1 794 444 238 111 41 chr11 27506337 27506508 -94337348 + RLTR41 LTR ERV1 264 446 0 1 794 207 0 0 0 chr11 27506749 27506772 -94337084 + (A)n Simple_repeat Simple_repeat 1 23 0 1 794 1326 275 26 34 chr11 27506826 27507176 -94336680 - RLTR41 LTR ERV1 0 446 100 1 794 1394 302 41 9 chr11 27507178 27507619 -94336237 - Lx6 LINE L1 -46 7414 6960 1 794 665 181 107 7 chr11 27507619 27507769 -94336087 - RMER16 LTR ERVK 0 533 369 1 794 23 0 0 0 chr11 27507773 27507796 -94336060 + AT_rich Low_complexity Low_complexity 1 23 0 1 794 446 319 25 0 chr11 27507801 27507961 -94335895 - Lx6 LINE L1 -729 6731 6568 1 794 1710 232 11 7 chr11 27507957 27508399 -94335457 - L1_Mur3 LINE L1 -1081 4799 4356 1 794 1407 238 65 46 chr11 27508413 27508897 -94334959 + RMER19B LTR ERVK 1 486 -416 1 794 1845 102 31 22 chr11 27508897 27509216 -94334640 - RLTRETN_Mm LTR ERVK 0 322 1 1 794 18816 146 27 20 chr11 27509216 27516059 -94327797 - ETnERV2-int LTR ERVK -107 7299 1 1 794 1840 109 31 22 chr11 27516059 27516378 -94327478 - RLTRETN_Mm LTR ERVK 0 322 1 1 794 1902 170 108 0 chr11 27516378 27516748 -94327108 + RMER19B LTR ERVK 481 890 -12 1 794 266 150 33 0 chr11 27516763 27516823 -94327033 - L1_Mur3 LINE L1 -1537 4343 4282 2 794 249 62 41 20 chr11 27516831 27516880 -94326976 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 2 794 560 148 20 0 chr11 27516880 27516981 -94326875 - L1_Mur3 LINE L1 -1592 4285 4183 2 794 980 225 136 53 chr11 27517059 27517435 -94326421 + RMER13A LTR ERVK 96 502 -358 2 794 1492 165 95 9 chr11 27517701 27518026 -94325830 - L1_Mur3 LINE L1 -1693 4187 3835 2 794 24962 110 11 13 chr11 27518046 27519821 -94324035 - L1_Mus2 LINE L1 0 6566 4734 2 794 201 74 0 0 chr11 27519821 27519848 -94324008 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 794 24962 122 18 28 chr11 27519848 27520125 -94323731 - L1_Mus2 LINE L1 -1150 4733 4459 2 794 546 16 0 0 chr11 27520125 27520188 -94323668 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 2 794 24962 122 18 28 chr11 27520188 27521263 -94322593 - L1_Mus2 LINE L1 -1425 4458 3489 2 794 207 0 0 0 chr11 27521263 27521286 -94322570 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 794 24962 122 18 28 chr11 27521286 27522960 -94320896 - L1_Mus2 LINE L1 -2395 3488 1801 2 794 992 238 30 15 chr11 27522946 27523210 -94320646 - L1_Mus2 LINE L1 -5962 654 387 2 794 356 276 113 71 chr11 27523267 27523435 -94320421 + B2_Mm2 SINE B2 2 176 -19 2 794 27 0 0 0 chr11 27524198 27524225 -94319631 + AT_rich Low_complexity Low_complexity 1 27 0 2 794 579 53 0 0 chr11 27524302 27524377 -94319479 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 2 794 272 297 54 8 chr11 27524631 27524760 -94319096 - L1MA9 LINE L1 -412 5900 5766 3 794 311 259 107 0 chr11 27524788 27524919 -94318937 - L1MA9 LINE L1 -712 5579 5435 3 795 15364 152 16 35 chr11 27526658 27530169 -94313687 + L1Md_F LINE L1 504 3918 -1965 3 795 23962 86 11 2 chr11 27530181 27534258 -94309598 - L1Md_F2 LINE L1 -4 6578 2462 3 795 2112 125 3 6 chr11 27534262 27534601 -94309255 + L1Md_F LINE L1 3939 4276 -1607 3 795 6608 84 9 2 chr11 27534745 27535639 -94308217 - L1Md_F2 LINE L1 -13 6569 5670 3 795 8950 123 10 5 chr11 27535637 27537029 -94306827 + L1Md_F2 LINE L1 4263 5661 -222 3 795 34405 62 2 3 chr11 27537028 27541190 -94302666 + L1Md_F2 LINE L1 422 4743 -1140 3 795 3490 18 2 0 chr11 27541190 27541585 -94302271 - MTA_Mm LTR MaLR 0 396 1 3 795 8887 41 7 1 chr11 27541587 27542676 -94301180 - MTA_Mm-int LTR MaLR -2 1096 1 3 795 3512 13 2 0 chr11 27542676 27543071 -94300785 - MTA_Mm LTR MaLR 0 396 1 3 795 34405 50 2 3 chr11 27543071 27543916 -94299940 + L1Md_F2 LINE L1 4744 5585 -298 3 795 7919 55 2 2 chr11 27543918 27544910 -94298946 + L1Md_F2 LINE L1 5589 6580 -2 3 795 6301 87 36 9 chr11 27545314 27546211 -94297645 + L1_Mus2 LINE L1 5645 6565 -1 3 795 420 37 0 0 chr11 27546325 27546379 -94297477 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 3 795 28 29 0 0 chr11 27548659 27548694 -94295162 + AT_rich Low_complexity Low_complexity 1 35 0 3 795 877 142 6 36 chr11 27548911 27549079 -94294777 - L1Md_F2 LINE L1 0 6582 6420 3 795 25 0 0 0 chr11 27549390 27549415 -94294441 + AT_rich Low_complexity Low_complexity 1 25 0 3 795 976 209 25 0 chr11 27549970 27550171 -94293685 - ORR1B2 LTR MaLR 0 367 162 4 795 3053 111 2 2 chr11 27550171 27550790 -94293066 + L1_Mus2 LINE L1 1078 1696 -4187 4 795 3484 124 4 0 chr11 27550790 27551328 -94292528 + L1_Mus2 LINE L1 4082 4621 -1262 4 795 5361 27 0 0 chr11 27551322 27551945 -94291911 - L1_Mm LINE L1 -77 5806 5184 4 795 3252 56 2 7 chr11 27551945 27552361 -94291495 + L1Md_F2 LINE L1 6169 6582 0 4 795 7974 132 7 6 chr11 27552361 27552492 -94291364 + L1_Mus2 LINE L1 4601 4732 -1151 4 795 185 0 40 0 chr11 27552492 27552517 -94291339 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 795 7974 113 8 3 chr11 27552517 27554345 -94289511 + L1_Mus2 LINE L1 4733 6566 0 4 795 523 355 54 65 chr11 27554655 27555134 -94288722 + RMER15-int LTR ERVL 4500 4973 -26 4 795 976 305 88 88 chr11 27556311 27556925 -94286931 + RLTR18 LTR ERVK 3 616 0 4 795 36 0 0 0 chr11 27557081 27557117 -94286739 + AT_rich Low_complexity Low_complexity 1 36 0 4 795 1060 95 23 29 chr11 27557241 27557414 -94286442 + L1_Mur2 LINE L1 3461 3632 -2245 4 795 304 215 15 0 chr11 27557411 27557476 -94286380 + L1_Mur2 LINE L1 5161 5226 -651 4 795 373 346 87 40 chr11 27557476 27557774 -94286082 + RLTR25B LTR ERVK 1 312 -716 5 795 3798 180 77 7 chr11 27557973 27559314 -94284542 - L1_Mur2 LINE L1 -4226 1651 375 5 795 1917 126 103 57 chr11 27559314 27559768 -94284088 + IAPLTR2_Mm LTR ERVK 1 475 0 5 795 2016 213 5 17 chr11 27559768 27559905 -94283951 - L1_Mur2 LINE L1 -6562 524 390 5 795 487 237 140 32 chr11 27559903 27560015 -94283841 - Lx9 LINE L1 -8 7636 7525 5 795 231 88 0 0 chr11 27560015 27560049 -94283807 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 795 487 237 140 32 chr11 27560049 27560215 -94283641 - Lx9 LINE L1 -120 7524 7329 5 795 213 39 0 0 chr11 27560377 27560403 -94283453 + (T)n Simple_repeat Simple_repeat 1 26 0 5 795 924 153 12 0 chr11 27560405 27560568 -94283288 - L1_Mus2 LINE L1 0 6566 6402 5 795 327 297 122 41 chr11 27560669 27560890 -94282966 + RLTR15 LTR ERVK 45 283 -76 5 795 272 301 39 0 chr11 27561014 27561117 -94282739 - Lx9 LINE L1 -491 7153 7047 5 795 40 59 0 0 chr11 27561405 27561473 -94282383 + AT_rich Low_complexity Low_complexity 1 68 0 5 795 1146 123 0 17 chr11 27561797 27561970 -94281886 + B2_Mm1t SINE B2 2 171 -22 5 795 371 134 321 9 chr11 27562022 27562134 -94281722 + B2_Mm2 SINE B2 47 193 -2 6 795 729 175 0 0 chr11 27562974 27563111 -94280745 + (TA)n Simple_repeat Simple_repeat 1 137 0 6 795 1759 103 3 14 chr11 27563474 27563768 -94280088 + MusHAL1 LINE L1 339 629 -2083 6 795 7995 103 6 0 chr11 27563765 27565586 -94278270 + L1_Mus2 LINE L1 4735 6566 0 6 795 708 130 0 0 chr11 27567655 27567770 -94276086 + (TTCC)n Simple_repeat Simple_repeat 1 115 0 6 795 1452 186 51 63 chr11 27567852 27568185 -94275671 + ORR1A4 LTR MaLR 1 329 0 6 795 352 332 134 23 chr11 27568215 27568477 -94275379 - B4A SINE B4 -1 291 1 6 795 3422 212 33 14 chr11 27568898 27569602 -94274254 - Lx5 LINE L1 -132 6918 6202 6 795 1022 301 44 18 chr11 27569617 27569955 -94273901 + RMER19C LTR ERVK 1 347 -264 6 795 350 258 0 0 chr11 27569957 27570023 -94273833 + RMER19C LTR ERVK 482 547 -355 6 795 2681 290 63 53 chr11 27570101 27571233 -94272623 + RMER1C Other Other 379 1340 -2 6 795 349 146 0 0 chr11 27571313 27571368 -94272488 - MT2B LTR ERVL 0 584 530 7 795 590 173 8 0 chr11 27571397 27571530 -94272326 + (TA)n Simple_repeat Simple_repeat 2 135 0 7 795 1218 264 106 78 chr11 27571536 27572038 -94271818 - MT2B LTR ERVL -83 518 3 7 795 2752 186 40 110 chr11 27572040 27572182 -94271674 - MERVL_2A-int LTR ERVL 0 5761 5616 7 795 246 250 56 42 chr11 27572182 27572253 -94271603 - ORR1A3-int LTR MaLR -1340 623 552 7 795 2752 186 40 110 chr11 27572253 27572758 -94271098 - MERVL_2A-int LTR ERVL 0 5615 5094 7 795 2125 211 28 17 chr11 27572759 27573222 -94270634 - MERVL_2A-int LTR ERVL -1598 4163 3696 7 795 870 102 0 0 chr11 27573718 27573845 -94270011 + (GA)n Simple_repeat Simple_repeat 2 128 0 7 795 1322 315 62 23 chr11 27574498 27575061 -94268795 + Lx9 LINE L1 6372 6956 -688 7 795 1527 167 10 30 chr11 27575068 27575371 -94268485 + Lx LINE L1 6356 6652 -2 7 795 2379 352 42 48 chr11 27575790 27577871 -94265985 - RodERV21-int LTR ERV1 -105 4886 2819 7 795 234 0 0 0 chr11 27578132 27578158 -94265698 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 795 331 331 41 67 chr11 27578554 27578897 -94264959 - RodERV21-int LTR ERV1 -3015 4076 3743 7 795 549 0 0 0 chr11 27579118 27579179 -94264677 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 795 5126 297 70 34 chr11 27579290 27581090 -94262766 - RodERV21-int LTR ERV1 -2390 2601 738 7 795 278 279 70 0 chr11 27581138 27581224 -94262632 - RMER17C-int LTR ERVK -2772 466 375 8 795 1405 249 117 57 chr11 27582579 27583110 -94260746 - RLTR20D LTR ERVK 0 568 6 8 795 290 304 25 6 chr11 27583342 27583356 -94260500 + (TA)n Simple_repeat Simple_repeat 2 15 0 8 795 276 30 0 0 chr11 27583356 27583389 -94260467 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 795 290 304 25 6 chr11 27583389 27583533 -94260323 + (TA)n Simple_repeat Simple_repeat 2 149 0 8 795 242 284 60 13 chr11 27583730 27583880 -94259976 - L1M2 LINE L1 -1376 4767 4611 8 795 432 272 16 72 chr11 27583894 27584144 -94259712 - L1M2 LINE L1 -1595 4548 4313 8 795 1135 213 35 0 chr11 27584194 27584424 -94259432 + RMER6D LTR ERVK 4 241 -479 8 795 38473 5 0 0 chr11 27584425 27589797 -94254059 + L1Md_A LINE L1 214 5586 -297 8 795 8997 4 0 0 chr11 27589797 27590793 -94253063 + L1Md_A LINE L1 5587 6582 0 8 795 2059 214 17 86 chr11 27590801 27591179 -94252677 + RMER6D LTR ERVK 231 595 -125 8 795 306 0 0 0 chr11 27591179 27591213 -94252643 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 795 1059 88 0 0 chr11 27591213 27591349 -94252507 - B1_Mm SINE Alu -10 137 2 8 795 2059 214 17 86 chr11 27591349 27591367 -94252489 + RMER6D LTR ERVK 596 607 -113 8 795 2140 68 14 4 chr11 27591367 27591647 -94252209 - L1_Mus1 LINE L1 0 6567 6285 9 795 2059 214 17 86 chr11 27591647 27591774 -94252082 + RMER6D LTR ERVK 608 719 -1 8 795 397 241 82 24 chr11 27592113 27592283 -94251573 - Lx7 LINE L1 -1884 5812 5633 9 795 757 251 125 7 chr11 27592380 27592685 -94251171 - Lx7 LINE L1 -1 7695 7355 9 795 480 128 0 0 chr11 27592685 27592763 -94251093 + (CACCAT)n Simple_repeat Simple_repeat 1 78 0 9 795 238 208 0 65 chr11 27592764 27592841 -94251015 - Lx7 LINE L1 -348 7348 7277 9 795 344 275 0 0 chr11 27592847 27592927 -94250929 - Lx7 LINE L1 -575 7121 7042 9 795 579 284 49 70 chr11 27593017 27593362 -94250494 - RLTR15 LTR ERVK -8 351 14 9 795 272 262 0 0 chr11 27593377 27593438 -94250418 - L1_Mur3 LINE L1 -1774 4106 4046 9 795 7355 4 0 0 chr11 27593438 27594260 -94249596 + L1Md_A LINE L1 4765 5586 -297 9 795 9032 2 0 0 chr11 27594260 27595256 -94248600 + L1Md_A LINE L1 5587 6582 0 9 795 605 307 85 49 chr11 27595262 27595881 -94247975 - L1M2 LINE L1 -2053 4087 3434 8 795 27 62 0 0 chr11 27596154 27596202 -94247654 + AT_rich Low_complexity Low_complexity 1 48 0 9 795 3679 232 39 96 chr11 27596228 27597398 -94246458 - RLTR25A LTR ERVK 0 1103 1 9 795 853 195 212 16 chr11 27597583 27597842 -94246014 + ORR1D1 LTR MaLR 1 313 -71 9 795 498 250 50 75 chr11 27597962 27598161 -94245695 - B3 SINE B2 0 195 2 1 795 15833 174 30 33 chr11 27599067 27600122 -94243734 + L1_Mus4 LINE L1 656 1715 -4168 1 795 895 125 7 0 chr11 27600122 27600258 -94243598 + B1_Mus2 SINE Alu 1 137 -10 1 795 15833 179 12 59 chr11 27600258 27602178 -94241678 + L1_Mus4 LINE L1 1716 3478 -2405 1 795 3170 49 0 0 chr11 27602178 27602568 -94241288 + L1Md_T LINE L1 6193 6582 0 1 795 15833 179 12 59 chr11 27602568 27603711 -94240145 + L1_Mus4 LINE L1 3479 4623 -1260 1 795 2110 160 30 20 chr11 27603716 27604118 -94239738 - RLTR9E LTR ERVK -3 406 1 1 795 400 123 0 76 chr11 27604120 27604199 -94239657 - ETnERV2-int LTR ERVK -3 7403 7331 1 795 17266 102 23 24 chr11 27604414 27606913 -94236943 - ETnERV2-int LTR ERVK -984 6422 3925 1 795 435 93 53 30 chr11 27606913 27607046 -94236810 + (TA)n Simple_repeat Simple_repeat 1 136 0 1 795 5030 131 30 5 chr11 27607053 27607887 -94235969 - ETnERV2-int LTR ERVK -3497 3909 3055 1 795 667 256 5 37 chr11 27607887 27608074 -94235782 - ETnERV2-int LTR ERVK -4798 2608 2428 1 795 744 180 58 27 chr11 27608054 27608242 -94235614 - ETnERV2-int LTR ERVK -5297 2109 1916 1 795 328 151 0 19 chr11 27608499 27608553 -94235303 - ETnERV2-int LTR ERVK -6277 1129 1077 1 795 2353 86 238 29 chr11 27608630 27609083 -94234773 - RLTR6_Mm LTR ERV1 -70 584 37 1 795 697 203 48 45 chr11 27609205 27609431 -94234425 - ETnERV2-int LTR ERVK -3020 294 10 1 795 2081 162 53 20 chr11 27609441 27609837 -94234019 - RLTR9E LTR ERVK 0 409 1 1 795 6394 158 37 6 chr11 27609837 27611134 -94232722 + L1_Mus4 LINE L1 4620 5954 -682 1 795 228 185 0 0 chr11 27612681 27612735 -94231121 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 795 995 184 153 99 chr11 27612818 27613191 -94230665 + ORR1B1 LTR MaLR 1 393 -1 1 795 436 289 103 69 chr11 27613194 27613514 -94230342 + MLT1C LTR MaLR 17 347 -120 1 795 304 334 33 6 chr11 27613883 27613996 -94229860 - B1F SINE Alu 0 120 7 1 795 1953 163 0 55 chr11 27614724 27615069 -94228787 - ORR1A3 LTR MaLR 0 326 1 1 795 7020 203 33 139 chr11 27615069 27615547 -94228309 - ORR1A3-int LTR MaLR 0 1963 1549 1 795 2710 98 34 3 chr11 27615547 27615935 -94227921 + MTB LTR MaLR 1 400 0 1 795 7020 203 33 139 chr11 27615935 27616596 -94227260 - ORR1A3-int LTR MaLR -415 1548 903 1 795 1055 177 38 0 chr11 27616596 27616782 -94227074 + B2_Mm2 SINE B2 2 194 -1 1 795 7020 203 33 139 chr11 27616782 27617802 -94226054 - ORR1A3-int LTR MaLR -1061 902 31 1 795 1366 173 78 65 chr11 27617811 27618133 -94225723 - ORR1A3 LTR MaLR 0 326 1 1 795 733 281 108 12 chr11 27618530 27618789 -94225067 + RMER1B Other Other 74 357 -709 1 795 2750 256 123 10 chr11 27618921 27619733 -94224123 + RMER1B Other Other 157 1060 -6 1 795 317 177 13 0 chr11 27620339 27620418 -94223438 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 795 1409 267 31 75 chr11 27621193 27621810 -94222046 - RMER17B LTR ERVK -9 899 363 1 795 726 203 152 0 chr11 27621811 27621988 -94221868 - RLTR26 LTR ERVK -438 204 1 1 795 323 340 86 43 chr11 27622258 27622421 -94221435 + L1ME2 LINE L1 5562 5731 -433 1 795 5145 47 13 0 chr11 27622429 27623066 -94220790 + L1Md_F3 LINE L1 5926 6570 -14 1 795 360 94 0 0 chr11 27623175 27623228 -94220628 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 795 306 0 0 0 chr11 27623228 27623261 -94220595 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 795 1391 228 82 91 chr11 27623261 27623710 -94220146 - RLTR11A LTR ERVK -83 445 1 1 795 254 267 60 22 chr11 27623755 27623889 -94219967 + L1ME2 LINE L1 5847 5985 -179 1 795 246 32 0 0 chr11 27624984 27625015 -94218841 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 795 223 111 55 18 chr11 27625023 27625078 -94218778 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 795 1586 176 20 73 chr11 27625410 27625753 -94218103 - ORR1A4 LTR MaLR 0 329 5 1 795 279 0 0 0 chr11 27625924 27625955 -94217901 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 795 549 303 33 128 chr11 27626327 27626602 -94217254 - MER67C LTR ERV1 -203 311 60 1 795 324 371 38 73 chr11 27627120 27627437 -94216419 + MLT2D LTR ERVL 64 369 -45 1 795 3428 214 82 44 chr11 27627623 27628492 -94215364 + RMER19B LTR ERVK 1 902 0 1 795 262 356 192 0 chr11 27628547 27628786 -94215070 - Lx8 LINE L1 -213 7260 6976 1 795 684 307 139 15 chr11 27628803 27629213 -94214643 + Lx8 LINE L1 6426 6886 -587 1 795 22 35 0 0 chr11 27630720 27630749 -94213107 + AT_rich Low_complexity Low_complexity 1 29 0 1 795 328 283 96 70 chr11 27632860 27633016 -94210840 - MT2A LTR ERVL -14 587 428 1 795 379 294 83 92 chr11 27633081 27633321 -94210535 - LTR84b LTR ERVL -463 298 61 1 795 797 258 42 108 chr11 27633788 27634075 -94209781 - RLTR20B3 LTR ERVK -289 288 21 1 795 647 279 36 143 chr11 27634082 27634429 -94209427 - MT2A LTR ERVL -165 436 1 1 795 1038 96 0 18 chr11 27634498 27634667 -94209189 + (GAA)n Simple_repeat Simple_repeat 3 168 0 1 795 23233 150 71 6 chr11 27634688 27637121 -94206735 + L1_Mus3 LINE L1 365 2866 -3017 1 795 537 16 0 0 chr11 27637121 27637183 -94206673 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 1 795 23233 135 66 1 chr11 27637183 27640671 -94203185 + L1_Mus3 LINE L1 2867 6637 -1 1 795 1057 261 60 85 chr11 27640722 27641237 -94202619 + RLTR16 LTR ERVK 1 502 -3 1 795 180 211 51 101 chr11 27641827 27641906 -94201950 + L2 LINE L2 2391 2465 -954 1 795 251 275 88 40 chr11 27642109 27642234 -94201622 - MTEb LTR MaLR -7 372 242 1 795 400 329 42 24 chr11 27642937 27643105 -94200751 + MER58A DNA MER1_type 45 215 -9 1 795 217 138 15 30 chr11 27643121 27643188 -94200668 + T-rich Low_complexity Low_complexity 1 66 0 1 795 515 157 237 7 chr11 27643548 27643683 -94200173 - RMER17D2 LTR ERVK -2 807 642 1 795 2032 142 66 20 chr11 27643722 27644162 -94199694 + RMER17D2 LTR ERVK 1 460 -349 1 795 2576 142 29 9 chr11 27644164 27644613 -94199243 - Lx3_Mus LINE L1 -418 6591 6134 1 795 5415 106 25 59 chr11 27644608 27645615 -94198241 + L1_Mur1 LINE L1 3325 4297 -1589 1 795 560 318 74 53 chr11 27645944 27646322 -94197534 + Lx8 LINE L1 6216 6601 -872 1 795 217 298 93 37 chr11 27646459 27646567 -94197289 - MER5A DNA MER1_type -18 171 58 1 795 1535 349 56 54 chr11 27646574 27648382 -94195474 - RodERV21-int LTR ERV1 -461 4530 2718 1 795 312 325 30 30 chr11 27648580 27648780 -94195076 - RLTR14-int LTR ERV1 -1948 3369 3170 1 795 455 278 105 65 chr11 27649408 27649468 -94194388 + B4A SINE B4 14 81 -211 1 795 1038 110 0 0 chr11 27649468 27649614 -94194242 + B1_Mus2 SINE Alu 2 147 0 1 795 237 56 53 53 chr11 27649618 27649693 -94194163 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 1 795 327 25 0 0 chr11 27650331 27650371 -94193485 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 795 278 309 91 65 chr11 27650511 27650743 -94193113 - RodERV21-int LTR ERV1 -3017 4074 3837 1 795 4598 290 16 39 chr11 27651044 27652597 -94191259 - RodERV21-int LTR ERV1 -2224 2767 1252 1 795 721 322 18 49 chr11 27652803 27653188 -94190668 - RodERV21-int LTR ERV1 -3913 1078 706 1 795 4134 204 89 27 chr11 27654723 27655764 -94188092 + MERVL_2A-int LTR ERVL 4648 5753 -8 1 795 585 230 0 26 chr11 27655768 27655884 -94187972 + MT2A LTR ERVL 1 113 -420 1 795 583 276 8 0 chr11 27655900 27656027 -94187829 + MT2A LTR ERVL 99 226 -307 1 99 11107 50 1 5 chr11 27656072 27657812 -94186044 - L1Md_F2 LINE L1 -8 6574 4844 1 796 2830 65 52 0 chr11 27657812 27658181 -94185675 + RLTR10 LTR ERVK 1 388 -2 1 796 11107 63 1 6 chr11 27658181 27658642 -94185214 - L1Md_F2 LINE L1 -1040 4843 4385 1 796 180 0 0 0 chr11 27658643 27658663 -94185193 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1 796 4776 66 6 0 chr11 27658674 27659337 -94184519 + L1_Mm LINE L1 3675 4341 -1542 1 796 529 237 91 42 chr11 27659337 27659488 -94184368 + MT2A LTR ERVL 322 546 -38 1 796 229 108 77 51 chr11 27659519 27659597 -94184259 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 796 46 68 0 0 chr11 27659673 27659761 -94184095 + AT_rich Low_complexity Low_complexity 1 88 0 1 796 23 0 0 0 chr11 27660621 27660644 -94183212 + AT_rich Low_complexity Low_complexity 1 23 0 1 796 21 36 0 0 chr11 27660736 27660764 -94183092 + AT_rich Low_complexity Low_complexity 1 28 0 1 796 1500 259 26 31 chr11 27660798 27661253 -94182603 - Lx9 LINE L1 -544 7100 6648 1 796 1258 201 140 29 chr11 27661732 27662040 -94181816 + ORR1B1 LTR MaLR 9 350 -44 1 796 189 0 0 0 chr11 27662056 27662077 -94181779 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 796 912 121 0 7 chr11 27662133 27662283 -94181573 - Lx LINE L1 -1 6653 6505 1 796 360 0 0 0 chr11 27662284 27662324 -94181532 + (T)n Simple_repeat Simple_repeat 1 40 0 1 796 7733 51 3 2 chr11 27662347 27663788 -94180068 - L1Md_F2 LINE L1 0 6582 5140 1 796 5361 89 0 0 chr11 27663781 27664537 -94179319 + L1Md_F2 LINE L1 4382 5137 -746 1 796 1452 131 188 7 chr11 27664565 27664857 -94178999 + IAPLTR4 LTR ERVK 1 345 0 1 796 346 130 232 0 chr11 27664859 27664928 -94178928 - Lx LINE L1 -164 6490 6406 1 796 39 0 0 0 chr11 27665562 27665601 -94178255 + AT_rich Low_complexity Low_complexity 1 39 0 1 796 13351 98 22 14 chr11 27665788 27666215 -94177641 - L1VL4 LINE L1 -1 3558 3125 1 796 216 0 0 0 chr11 27666215 27666239 -94177617 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1 796 15833 98 21 12 chr11 27666239 27668762 -94175094 - L1VL4 LINE L1 -435 3124 577 1 796 288 211 18 0 chr11 27670643 27670700 -94173156 + RMER5 LTR ERV1 41 98 -436 1 796 2018 208 45 42 chr11 27670838 27671365 -94172491 - RMER6C LTR ERVK -2 688 160 1 796 1649 134 4 7 chr11 27671595 27671866 -94171990 - Lx LINE L1 -767 5887 5618 1 796 1598 270 122 59 chr11 27671923 27672513 -94171343 + Lx5 LINE L1 5998 6624 -426 1 796 4548 182 22 28 chr11 27672529 27673416 -94170440 + RLTR25A LTR ERVK 1 882 -221 1 796 30867 86 10 6 chr11 27673539 27678733 -94165123 + L1Md_F2 LINE L1 369 5586 -297 1 796 7561 65 2 13 chr11 27678734 27679740 -94164116 + L1Md_F2 LINE L1 5588 6582 0 1 796 215 130 19 0 chr11 27679876 27679930 -94163926 + (TTTTTG)n Simple_repeat Simple_repeat 2 56 0 1 796 721 232 44 116 chr11 27680063 27680185 -94163671 + RLTR25A LTR ERVK 832 950 -153 1 796 435 19 0 0 chr11 27680185 27680237 -94163619 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 796 721 232 44 116 chr11 27680237 27680259 -94163597 + RLTR25A LTR ERVK 951 966 -137 1 796 594 0 0 0 chr11 27680259 27680325 -94163531 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 796 721 232 44 116 chr11 27680325 27680472 -94163384 + RLTR25A LTR ERVK 967 1103 0 1 796 845 250 11 6 chr11 27680472 27680649 -94163207 + Lx5 LINE L1 6627 6804 -246 1 796 420 20 0 0 chr11 27680697 27680746 -94163110 + (TTC)n Simple_repeat Simple_repeat 3 51 0 1 796 1202 85 6 0 chr11 27680746 27680923 -94162933 + (TCC)n Simple_repeat Simple_repeat 3 180 0 1 796 749 216 86 32 chr11 27681079 27681299 -94162557 + RLTR42-int LTR ERVK 1105 1336 -4186 1 796 741 23 0 0 chr11 27681304 27681391 -94162465 + (GGAGA)n Simple_repeat Simple_repeat 5 91 0 1 796 1221 231 25 23 chr11 27681906 27682205 -94161651 + ORR1B2 LTR MaLR 108 525 -733 1 796 5929 219 60 11 chr11 27682212 27683538 -94160318 + ORR1B2-int LTR MaLR 1 1394 -115 1 796 2392 129 123 5 chr11 27683538 27683929 -94159927 - RLTR9B LTR ERVK 0 437 1 1 796 5929 219 60 11 chr11 27683929 27684040 -94159816 + ORR1B2-int LTR MaLR 1395 1509 0 1 796 1118 252 116 11 chr11 27684044 27684397 -94159459 + ORR1B2 LTR MaLR 5 394 0 1 796 519 17 0 0 chr11 27685021 27685081 -94158775 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 796 2690 234 72 26 chr11 27685305 27686190 -94157666 + L1_Mur3 LINE L1 513 1430 -4450 1 796 2525 223 21 12 chr11 27686482 27687421 -94156435 + Lx5 LINE L1 895 1842 -4035 1 796 2845 199 19 44 chr11 27687421 27688119 -94155737 - RLTR22_Mur LTR ERVK -1168 680 1 1 796 347 269 68 66 chr11 27688142 27688296 -94155560 - RMER20A LTR ERVK -158 469 314 1 796 1951 131 84 86 chr11 27688296 27688772 -94155084 + IAPLTR2_Mm LTR ERVK 1 475 0 1 796 347 256 24 40 chr11 27688772 27688842 -94155014 - RMER20A LTR ERVK -198 318 246 1 796 607 269 195 23 chr11 27689058 27689279 -94154577 + RLTR22_Mur LTR ERVK 1590 1848 0 2 796 277 311 68 108 chr11 27689279 27689424 -94154432 + RMER20B LTR ERVK 445 583 -44 2 796 1031 227 57 92 chr11 27689566 27689988 -94153868 - RMER17C LTR ERVK -3 407 1 2 796 819 64 0 0 chr11 27690007 27690117 -94153739 + (TAG)n Simple_repeat Simple_repeat 2 111 0 2 796 25 31 0 0 chr11 27691379 27691411 -94152445 + AT_rich Low_complexity Low_complexity 1 32 0 2 796 8743 222 40 146 chr11 27691683 27692743 -94151113 + Lx5 LINE L1 2879 3941 -1942 1 796 1733 256 78 26 chr11 27692743 27693241 -94150615 - RLTR20C LTR ERVK 0 534 11 2 796 8743 222 40 146 chr11 27693241 27694027 -94149829 + Lx5 LINE L1 3942 4731 -1152 1 796 186 43 0 0 chr11 27694027 27694050 -94149806 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 796 8743 167 47 59 chr11 27694050 27694534 -94149322 + Lx5 LINE L1 4726 5142 -735 1 796 309 0 98 0 chr11 27694534 27694595 -94149261 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 2 796 8743 167 47 59 chr11 27694595 27694813 -94149043 + Lx5 LINE L1 5143 5340 -537 1 796 1059 112 7 0 chr11 27694813 27694956 -94148900 + B1_Mus2 SINE Alu 3 146 -1 2 796 8743 167 47 59 chr11 27694956 27694969 -94148887 + Lx5 LINE L1 5341 5355 -522 1 796 566 0 29 0 chr11 27694969 27695038 -94148818 + (GAAAA)n Simple_repeat Simple_repeat 4 74 0 2 796 8743 203 73 21 chr11 27695038 27696614 -94147242 + Lx5 LINE L1 5356 7047 -3 1 796 29 0 0 0 chr11 27698227 27698256 -94145600 + AT_rich Low_complexity Low_complexity 1 29 0 2 796 1194 232 108 58 chr11 27699599 27700061 -94143795 - Lx7 LINE L1 0 7696 7212 2 796 12697 234 73 20 chr11 27700093 27701553 -94142303 - Lx7 LINE L1 -1289 6407 4840 2 796 198 0 0 0 chr11 27701553 27701575 -94142281 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 796 12697 221 74 30 chr11 27701575 27704338 -94139518 - Lx7 LINE L1 -1041 4839 1981 2 796 745 138 57 16 chr11 27704339 27704496 -94139360 + RMER17D LTR ERVK 767 942 -16 2 796 1218 72 6 0 chr11 27704496 27704662 -94139194 - MusHAL1 LINE L1 -2055 657 491 2 796 261 0 0 0 chr11 27704662 27704691 -94139165 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 796 283 307 61 80 chr11 27704722 27704885 -94138971 + MTE-int LTR MaLR 1 160 -1420 2 796 2236 211 12 14 chr11 27705077 27705559 -94138297 - L1_Rod LINE L1 -1509 4338 3858 2 796 307 120 51 39 chr11 27705559 27705637 -94138219 - L1Md_F3 LINE L1 0 6584 6506 2 796 1472 87 0 0 chr11 27705637 27705832 -94138024 + L1_Mus1 LINE L1 6309 6503 -64 2 796 1967 95 4 7 chr11 27705826 27706086 -94137770 - L1_Mus2 LINE L1 -308 6258 5998 2 796 3411 109 0 8 chr11 27706086 27706586 -94137270 - L1Md_F2 LINE L1 -12 6570 6075 2 796 1967 95 4 7 chr11 27706586 27706600 -94137256 - L1_Mus2 LINE L1 -569 5997 5985 2 796 5443 89 5 1 chr11 27706602 27707367 -94136489 + L1_Mm LINE L1 1203 1967 -3916 2 796 273 29 0 0 chr11 27707367 27707401 -94136455 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 796 5443 89 5 1 chr11 27707401 27707437 -94136419 + L1_Mm LINE L1 1968 2006 -3877 2 796 248 71 0 87 chr11 27707425 27707471 -94136385 + L1_Mm LINE L1 2706 2747 -3136 2 796 654 94 0 0 chr11 27707458 27707543 -94136313 - L1VL1 LINE L1 -6292 130 46 2 796 390 57 0 0 chr11 27707543 27707596 -94136260 + (ATTG)n Simple_repeat Simple_repeat 1 53 0 2 796 6362 115 18 3 chr11 27707596 27708870 -94134986 - L1VL2 LINE L1 -2231 1384 92 2 796 970 237 44 54 chr11 27708870 27709293 -94134563 - Lx7 LINE L1 -4484 1396 976 2 796 1167 229 22 2 chr11 27709979 27710235 -94133621 - ORR1B2 LTR MaLR 0 367 66 2 796 342 115 0 0 chr11 27710235 27710287 -94133569 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 796 822 297 43 25 chr11 27710287 27710310 -94133546 - ORR1B2 LTR MaLR -262 65 43 2 796 247 333 8 48 chr11 27710424 27710550 -94133306 + LTR80B LTR ERVL 448 568 -16 2 796 746 311 95 39 chr11 27710803 27711265 -94132591 - MER89 LTR ERV1 -71 488 1 2 796 23 92 0 0 chr11 27711479 27711544 -94132312 + AT_rich Low_complexity Low_complexity 1 65 0 2 796 187 29 27 54 chr11 27712884 27712921 -94130935 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 796 2328 178 6 67 chr11 27713176 27713687 -94130169 - Lx2 LINE L1 -575 6422 5943 2 796 9206 119 6 24 chr11 27713692 27715562 -94128294 - L1VL4 LINE L1 -1172 2387 538 2 796 505 52 0 25 chr11 27715755 27715834 -94128022 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 796 240 188 0 0 chr11 27715836 27715900 -94127956 + T-rich Low_complexity Low_complexity 1 64 0 2 796 1047 102 14 0 chr11 27715915 27716062 -94127794 - B1_Mur4 SINE Alu 0 150 2 2 796 1795 301 102 50 chr11 27716064 27717016 -94126840 + Lx7 LINE L1 6173 7173 -523 2 796 1274 253 111 27 chr11 27717262 27718048 -94125808 - Lx7 LINE L1 -1729 5967 5087 2 796 240 86 0 0 chr11 27718050 27718085 -94125771 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 796 875 231 75 16 chr11 27718651 27719030 -94124826 + RLTR20A2 LTR ERVK 1 568 0 2 796 21 82 0 0 chr11 27719272 27719321 -94124535 + AT_rich Low_complexity Low_complexity 1 49 0 2 796 377 287 53 42 chr11 27720322 27720511 -94123345 + B3A SINE B2 1 191 -7 2 796 732 240 109 79 chr11 27721104 27721371 -94122485 + RLTR25B LTR ERVK 743 1017 -11 2 796 343 279 23 0 chr11 27721706 27721792 -94122064 + B4 SINE B4 143 230 -62 2 796 666 301 73 36 chr11 27721807 27722152 -94121704 - LTRIS4 LTR ERV1 0 564 206 2 796 282 275 0 0 chr11 27722390 27722459 -94121397 - ID2 SINE ID -11 72 4 2 796 2855 3 0 0 chr11 27722618 27722935 -94120921 + L1Md_A LINE L1 5270 5586 -297 2 796 8903 9 0 0 chr11 27722935 27723931 -94119925 + L1Md_A LINE L1 5587 6582 0 2 796 218 156 0 22 chr11 27723965 27724011 -94119845 + GA-rich Low_complexity Low_complexity 2 46 0 2 796 368 220 18 35 chr11 27724384 27724497 -94119359 - RodERV21-int LTR ERV1 -198 4793 4683 2 796 255 290 19 29 chr11 27725229 27725332 -94118524 - MER52-int LTR ERV1 -1319 5772 5671 2 796 267 360 61 0 chr11 27725888 27726035 -94117821 - RodERV21-int LTR ERV1 -3444 4157 4002 2 796 515 337 9 37 chr11 27727027 27727354 -94116502 - RodERV21-int LTR ERV1 -3188 3903 3586 2 796 3393 292 43 20 chr11 27727475 27728909 -94114947 - RodERV21-int LTR ERV1 -2273 2718 1252 2 796 677 253 43 71 chr11 27729118 27729373 -94114483 - RodERV21-int LTR ERV1 -3906 1085 838 2 796 16580 164 20 53 chr11 27729892 27734362 -94109494 + Lx LINE L1 2339 6651 -3 2 796 204 167 24 0 chr11 27735384 27735426 -94108430 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 796 21 0 0 0 chr11 27735987 27736008 -94107848 + AT_rich Low_complexity Low_complexity 1 21 0 2 796 2245 47 0 0 chr11 27736208 27736483 -94107373 + L1_Mus1 LINE L1 6292 6566 -1 2 796 23 33 0 0 chr11 27736727 27736757 -94107099 + AT_rich Low_complexity Low_complexity 1 30 0 2 796 23 0 0 0 chr11 27736876 27736899 -94106957 + AT_rich Low_complexity Low_complexity 1 23 0 2 796 320 309 112 7 chr11 27737250 27737533 -94106323 + L1_Mur3 LINE L1 5097 5400 -480 2 796 411 211 194 32 chr11 27737537 27737723 -94106133 + L1_Mur3 LINE L1 5589 5804 -76 2 796 1064 268 82 6 chr11 27737847 27738203 -94105653 + RMER20A LTR ERVK 20 402 -114 2 796 1137 217 3 99 chr11 27738544 27738887 -94104969 + RMER1C Other Other 1033 1342 0 2 796 595 339 35 18 chr11 27738927 27739212 -94104644 + B4A SINE B4 1 290 -2 2 796 1490 221 54 14 chr11 27740741 27741094 -94102762 - ORR1B2 LTR MaLR 0 367 1 2 796 288 0 0 0 chr11 27741509 27741541 -94102315 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 796 451 331 20 86 chr11 27741693 27741891 -94101965 + B3A SINE B2 5 189 -9 2 796 318 106 0 0 chr11 27741901 27741948 -94101908 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 796 21 0 0 0 chr11 27742450 27742471 -94101385 + AT_rich Low_complexity Low_complexity 1 21 0 2 796 513 262 95 8 chr11 27743513 27743755 -94100101 + Lx9 LINE L1 7382 7644 0 2 796 313 331 143 11 chr11 27743999 27744362 -94099494 - L1MC1 LINE L1 -69 6264 5854 2 796 2276 168 63 12 chr11 27746793 27747222 -94096634 - RLTR11B LTR ERVK 0 453 3 2 796 1898 92 10 55 chr11 27747283 27747595 -94096261 + L1_Mus3 LINE L1 6341 6638 0 2 796 250 73 0 83 chr11 27747686 27747746 -94096110 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2 796 1573 27 21 0 chr11 27748218 27748406 -94095450 + B2_Mm1a SINE B2 1 192 -1 2 796 183 100 0 0 chr11 27748408 27748438 -94095418 + (A)n Simple_repeat Simple_repeat 1 30 0 2 796 842 284 110 25 chr11 27749227 27749643 -94094213 - RMER15 LTR ERVL -2 573 38 2 796 22 0 0 0 chr11 27750967 27750989 -94092867 + AT_rich Low_complexity Low_complexity 1 22 0 2 796 1194 61 0 0 chr11 27751082 27751230 -94092626 + B1_Mus1 SINE Alu 1 148 0 2 796 195 42 0 0 chr11 27751230 27751254 -94092602 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 796 185 302 79 0 chr11 27751286 27751349 -94092507 - MER5B DNA MER1_type -2 176 109 2 796 2261 195 47 7 chr11 27751592 27752035 -94091821 + MERVL_2A-int LTR ERVL 1742 2202 -3559 2 796 696 271 82 107 chr11 27752047 27752411 -94091445 - RMER20B LTR ERVK -39 588 234 2 796 2077 216 23 0 chr11 27752623 27753050 -94090806 + MERVL_2A-int LTR ERVL 2190 2626 -3135 2 796 1596 170 17 80 chr11 27753050 27753401 -94090455 + ORR1A4 LTR MaLR 1 329 0 2 796 8398 166 51 96 chr11 27753403 27755458 -94088398 + ORR1A4-int LTR MaLR 3 1963 0 2 796 1705 148 9 68 chr11 27755458 27755784 -94088072 + ORR1A4 LTR MaLR 15 321 -8 2 796 722 231 37 11 chr11 27755793 27755981 -94087875 + MERVL_2A-int LTR ERVL 2627 2819 -2942 2 796 1557 176 34 58 chr11 27755984 27756513 -94087343 - RLTR1 LTR ERV1 0 624 1 2 796 5187 226 60 2 chr11 27756521 27757669 -94086187 + MERVL_2A-int LTR ERVL 2836 4050 -1711 2 796 25 51 0 0 chr11 27759198 27759237 -94084619 + AT_rich Low_complexity Low_complexity 1 39 0 2 796 21 36 0 0 chr11 27759542 27759570 -94084286 + AT_rich Low_complexity Low_complexity 1 28 0 2 796 413 280 96 62 chr11 27759834 27760188 -94083668 + RLTR9A LTR ERVK 3 368 0 2 796 470 276 81 0 chr11 27760458 27760581 -94083275 - ID_B1 SINE B4 -1 223 91 2 796 3360 30 5 0 chr11 27760875 27761269 -94082587 - MTA_Mm LTR MaLR 0 396 1 2 796 753 43 0 0 chr11 27761312 27761405 -94082451 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 796 717 305 80 18 chr11 27762137 27762411 -94081445 + RodERV21-int LTR ERV1 709 999 -3992 2 796 2117 297 30 20 chr11 27762422 27763084 -94080772 + RodERV21-int LTR ERV1 1265 1933 -3058 2 796 298 227 105 74 chr11 27763084 27763179 -94080677 + RodERV21-int LTR ERV1 2491 2588 -2403 2 796 880 148 0 0 chr11 27763269 27763404 -94080452 + B1_Mus1 SINE Alu 2 136 -12 2 796 399 41 0 0 chr11 27763406 27763455 -94080401 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 796 456 297 49 60 chr11 27763478 27763847 -94080009 + RodERV21-int LTR ERV1 3615 3979 -3112 2 796 1470 352 33 17 chr11 27764854 27765637 -94078219 + RodERV21-int LTR ERV1 3998 4793 -198 2 796 311 244 28 3 chr11 27766564 27766678 -94077178 + L1MB8 LINE L1 5705 5823 -355 2 796 369 0 0 0 chr11 27766679 27766720 -94077136 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 796 231 125 0 0 chr11 27766720 27766759 -94077097 + (TATG)n Simple_repeat Simple_repeat 3 42 0 2 796 278 306 83 47 chr11 27766767 27766959 -94076897 + L1MB8 LINE L1 5863 6061 -117 2 796 1085 84 11 22 chr11 27767879 27768061 -94075795 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 796 1068 90 7 0 chr11 27768087 27768232 -94075624 - B1_Mus2 SINE Alu -1 146 1 2 796 29 28 0 0 chr11 27769021 27769057 -94074799 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 215 232 22 34 chr11 27769206 27769295 -94074561 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 2 796 32 0 0 0 chr11 27770236 27770268 -94073588 + AT_rich Low_complexity Low_complexity 1 32 0 2 796 211 329 12 0 chr11 27770361 27770443 -94073413 + (TATG)n Simple_repeat Simple_repeat 4 86 0 3 796 566 346 96 0 chr11 27770443 27770683 -94073173 - B4 SINE B4 -28 264 2 3 796 4542 183 43 24 chr11 27771949 27772865 -94070991 - Lx2B LINE L1 -2 6998 6066 3 796 1313 181 60 4 chr11 27772878 27773145 -94070711 + L1_Mur2 LINE L1 5014 5295 -582 3 796 2364 125 192 75 chr11 27773172 27773731 -94070125 + RMER17A LTR ERVK 256 887 -2 3 796 1394 169 55 0 chr11 27773731 27773986 -94069870 + L1_Mm LINE L1 5296 5564 -319 3 796 17277 135 32 36 chr11 27774001 27780557 -94063299 - Lx2 LINE L1 -98 6899 368 3 796 1105 186 37 88 chr11 27780560 27780810 -94063046 - L1_Mur2 LINE L1 -2157 3720 3482 3 796 263 72 0 23 chr11 27780810 27780853 -94063003 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 796 1105 186 37 88 chr11 27780853 27780897 -94062959 - L1_Mur2 LINE L1 -2396 3481 3441 3 796 5520 88 16 7 chr11 27780895 27781648 -94062208 - Lx3_Mus LINE L1 -2 7007 6248 3 796 823 112 51 38 chr11 27781653 27781811 -94062045 - Lx3_Mus LINE L1 -942 6067 5908 3 796 276 200 0 0 chr11 27781811 27781871 -94061985 + CT-rich Low_complexity Low_complexity 2 61 0 3 796 713 89 27 0 chr11 27781871 27781983 -94061873 - Lx3_Mus LINE L1 -1089 5920 5806 3 796 27 0 0 0 chr11 27782192 27782219 -94061637 + AT_rich Low_complexity Low_complexity 1 27 0 3 796 21 0 0 0 chr11 27782275 27782296 -94061560 + AT_rich Low_complexity Low_complexity 1 21 0 3 796 5132 11 0 0 chr11 27782330 27782901 -94060955 + MERVL-int LTR ERVL 1295 1865 -3620 3 796 5399 8 0 0 chr11 27783359 27783952 -94059904 - MERVL-int LTR ERVL -2236 3249 2657 3 796 520 65 0 0 chr11 27783967 27784029 -94059827 + Lx3_Mus LINE L1 6578 6639 -370 3 796 970 18 0 0 chr11 27784029 27784140 -94059716 + MERVL-int LTR ERVL 2528 2638 -2847 3 796 1787 10 25 0 chr11 27784131 27784333 -94059523 + MERVL-int LTR ERVL 2837 3043 -2442 3 796 4003 29 0 0 chr11 27784337 27784792 -94059064 - MERVL-int LTR ERVL -929 4556 4102 3 796 2276 168 63 12 chr11 27785405 27785834 -94058022 - RLTR11B LTR ERVK 0 453 3 3 796 1898 92 10 55 chr11 27785895 27786207 -94057649 + L1_Mus3 LINE L1 6341 6638 0 3 796 250 73 0 83 chr11 27786298 27786358 -94057498 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 796 1573 27 21 0 chr11 27786830 27787018 -94056838 + B2_Mm1a SINE B2 1 192 -1 3 796 183 100 0 0 chr11 27787020 27787050 -94056806 + (A)n Simple_repeat Simple_repeat 1 30 0 3 797 842 284 110 25 chr11 27787839 27788255 -94055601 - RMER15 LTR ERVL -2 573 38 3 797 22 0 0 0 chr11 27789579 27789601 -94054255 + AT_rich Low_complexity Low_complexity 1 22 0 3 797 1194 61 0 0 chr11 27789694 27789842 -94054014 + B1_Mus1 SINE Alu 1 148 0 3 797 195 42 0 0 chr11 27789842 27789866 -94053990 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3 797 185 302 79 0 chr11 27789898 27789961 -94053895 - MER5B DNA MER1_type -2 176 109 3 797 2261 195 47 7 chr11 27790204 27790647 -94053209 + MERVL_2A-int LTR ERVL 1742 2202 -3559 3 797 696 271 82 107 chr11 27790659 27791023 -94052833 - RMER20B LTR ERVK -39 588 234 3 797 2077 216 23 0 chr11 27791235 27791662 -94052194 + MERVL_2A-int LTR ERVL 2190 2626 -3135 3 797 1596 170 17 80 chr11 27791662 27792013 -94051843 + ORR1A4 LTR MaLR 1 329 0 3 797 8398 166 51 96 chr11 27792015 27794070 -94049786 + ORR1A4-int LTR MaLR 3 1963 0 3 797 1705 148 9 68 chr11 27794070 27794396 -94049460 + ORR1A4 LTR MaLR 15 321 -8 3 797 722 231 37 11 chr11 27794405 27794593 -94049263 + MERVL_2A-int LTR ERVL 2627 2819 -2942 3 797 1557 176 34 58 chr11 27794596 27795125 -94048731 - RLTR1 LTR ERV1 0 624 1 3 797 5187 226 60 2 chr11 27795133 27796281 -94047575 + MERVL_2A-int LTR ERVL 2836 4050 -1711 3 797 25 51 0 0 chr11 27797810 27797849 -94046007 + AT_rich Low_complexity Low_complexity 1 39 0 3 797 21 36 0 0 chr11 27798154 27798182 -94045674 + AT_rich Low_complexity Low_complexity 1 28 0 3 797 413 280 96 62 chr11 27798446 27798800 -94045056 + RLTR9A LTR ERVK 3 368 0 3 797 470 276 81 0 chr11 27799070 27799193 -94044663 - ID_B1 SINE B4 -1 223 91 3 797 3360 30 5 0 chr11 27799487 27799881 -94043975 - MTA_Mm LTR MaLR 0 396 1 3 797 753 43 0 0 chr11 27799924 27800017 -94043839 + (TC)n Simple_repeat Simple_repeat 2 94 0 3 797 717 305 80 18 chr11 27800749 27801023 -94042833 + RodERV21-int LTR ERV1 709 999 -3992 3 797 2117 297 30 20 chr11 27801034 27801696 -94042160 + RodERV21-int LTR ERV1 1265 1933 -3058 3 797 298 227 105 74 chr11 27801696 27801791 -94042065 + RodERV21-int LTR ERV1 2491 2588 -2403 3 797 880 148 0 0 chr11 27801881 27802016 -94041840 + B1_Mus1 SINE Alu 2 136 -12 3 797 399 41 0 0 chr11 27802018 27802067 -94041789 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 797 456 297 49 60 chr11 27802090 27802459 -94041397 + RodERV21-int LTR ERV1 3615 3979 -3112 3 797 1470 352 33 17 chr11 27803466 27804249 -94039607 + RodERV21-int LTR ERV1 3998 4793 -198 3 797 311 244 28 3 chr11 27805176 27805290 -94038566 + L1MB8 LINE L1 5705 5823 -355 3 797 459 0 0 0 chr11 27805291 27805342 -94038514 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 797 231 125 0 0 chr11 27805342 27805381 -94038475 + (TATG)n Simple_repeat Simple_repeat 3 42 0 3 797 278 306 83 47 chr11 27805389 27805581 -94038275 + L1MB8 LINE L1 5863 6061 -117 3 797 1119 90 11 11 chr11 27806519 27806699 -94037157 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 797 1068 90 7 0 chr11 27806717 27806862 -94036994 - B1_Mus2 SINE Alu -1 146 1 3 797 29 28 0 0 chr11 27807651 27807687 -94036169 + AT_rich Low_complexity Low_complexity 1 36 0 3 797 215 232 22 34 chr11 27807836 27807925 -94035931 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 3 797 32 0 0 0 chr11 27808866 27808898 -94034958 + AT_rich Low_complexity Low_complexity 1 32 0 3 797 211 329 12 0 chr11 27808991 27809073 -94034783 + (TATG)n Simple_repeat Simple_repeat 4 86 0 3 797 566 346 96 0 chr11 27809073 27809313 -94034543 - B4 SINE B4 -28 264 2 3 797 4542 183 43 24 chr11 27810579 27811495 -94032361 - Lx2B LINE L1 -2 6998 6066 3 797 1313 181 60 4 chr11 27811508 27811775 -94032081 + L1_Mur2 LINE L1 5014 5295 -582 3 797 2364 125 192 75 chr11 27811802 27812361 -94031495 + RMER17A LTR ERVK 256 887 -2 3 797 1394 169 55 0 chr11 27812361 27812616 -94031240 + L1_Mm LINE L1 5296 5564 -319 3 797 19310 168 40 43 chr11 27812631 27819187 -94024669 - Lx2 LINE L1 -98 6899 368 3 797 1105 186 37 88 chr11 27819190 27819440 -94024416 - L1_Mur2 LINE L1 -2157 3720 3482 3 797 263 72 0 23 chr11 27819440 27819483 -94024373 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 797 1105 186 37 88 chr11 27819483 27819527 -94024329 - L1_Mur2 LINE L1 -2396 3481 3441 3 797 5520 88 16 7 chr11 27819525 27820278 -94023578 - Lx3_Mus LINE L1 -2 7007 6248 3 797 823 112 51 38 chr11 27820283 27820441 -94023415 - Lx3_Mus LINE L1 -942 6067 5908 3 797 278 167 0 16 chr11 27820441 27820502 -94023354 + CT-rich Low_complexity Low_complexity 2 61 0 3 797 713 89 27 0 chr11 27820502 27820614 -94023242 - Lx3_Mus LINE L1 -1089 5920 5806 3 797 27 0 0 0 chr11 27820823 27820850 -94023006 + AT_rich Low_complexity Low_complexity 1 27 0 3 797 21 0 0 0 chr11 27820906 27820927 -94022929 + AT_rich Low_complexity Low_complexity 1 21 0 3 797 216 0 0 0 chr11 27821158 27821182 -94022674 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 3 797 4866 122 26 7 chr11 27821196 27821950 -94021906 - Lx3_Mus LINE L1 -47 6962 6194 3 797 3223 148 45 24 chr11 27821952 27822737 -94021119 - RLTR13D2 LTR ERVK 0 1023 1 3 797 672 149 0 0 chr11 27822737 27822851 -94021005 - Lx3_Mus LINE L1 -813 6196 6083 3 797 1828 183 12 15 chr11 27823340 27823744 -94020112 - L1_Mur3 LINE L1 -1137 4743 4341 3 797 2851 250 53 11 chr11 27823749 27824450 -94019406 + Lx6 LINE L1 6563 7292 -168 3 797 180 111 0 0 chr11 27824470 27824497 -94019359 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 3 797 2864 156 4 31 chr11 27824579 27825067 -94018789 + MT2C_Mm LTR ERVL 1 475 0 3 797 251 234 21 49 chr11 27825175 27825319 -94018537 + (TTTG)n Simple_repeat Simple_repeat 4 143 0 3 797 9275 136 27 21 chr11 27825377 27827023 -94016833 + MusHAL1 LINE L1 525 2183 -529 3 797 4052 116 40 97 chr11 27827023 27827819 -94016037 + RMER17A LTR ERVK 1 751 0 3 797 9275 136 27 21 chr11 27827819 27827896 -94015960 + MusHAL1 LINE L1 2184 2257 -455 3 797 8987 149 58 15 chr11 27827899 27830153 -94013703 + L1_Mur1 LINE L1 6 2789 -3097 3 797 6984 124 4 2 chr11 27830153 27831269 -94012587 - L1_Mus4 LINE L1 0 6636 5538 3 797 9832 111 51 2 chr11 27831256 27831608 -94012248 + L1_Mur1 LINE L1 2785 3134 -2752 3 797 245 29 29 0 chr11 27831608 27831642 -94012214 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 797 9832 111 51 2 chr11 27831642 27832890 -94010966 + L1_Mur1 LINE L1 3135 4462 -1424 3 797 2374 67 3 25 chr11 27832890 27833212 -94010644 + L1_Mus1 LINE L1 6237 6551 -16 3 797 202 21 40 60 chr11 27833212 27833262 -94010594 + (TAA)n Simple_repeat Simple_repeat 2 50 0 3 797 1241 135 0 0 chr11 27833262 27833462 -94010394 - MusHAL1 LINE L1 -2923 431 232 3 797 184 301 81 72 chr11 27833861 27833972 -94009884 - L2a LINE L2 -12 3414 3303 3 797 446 289 51 26 chr11 27834499 27834616 -94009240 + MLT1E1A LTR MaLR 517 636 -44 3 797 318 267 15 13 chr11 27834688 27834766 -94009090 + RSINE1 SINE B4 2 80 -85 3 797 4214 44 0 0 chr11 27835388 27836004 -94007852 - L1Md_F3 LINE L1 -469 6113 5498 3 797 3729 45 19 6 chr11 27836004 27836472 -94007384 + L1Md_F3 LINE L1 6110 6583 -1 3 797 2284 80 119 11 chr11 27836877 27837229 -94006627 + RLTR10 LTR ERVK 1 390 0 3 797 450 0 0 0 chr11 27838251 27838301 -94005555 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 3 797 228 67 0 0 chr11 27838970 27839000 -94004856 + (GGA)n Simple_repeat Simple_repeat 2 31 0 3 797 202 228 0 17 chr11 27839076 27839134 -94004722 + T-rich Low_complexity Low_complexity 4 60 0 3 797 486 0 0 0 chr11 27839454 27839508 -94004348 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 797 824 142 0 49 chr11 27839503 27839524 -94004332 + A-rich Low_complexity Low_complexity 5 25 0 3 797 1015 0 0 109 chr11 27839524 27839726 -94004130 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 797 824 142 0 49 chr11 27839726 27839889 -94003967 + A-rich Low_complexity Low_complexity 26 180 0 3 797 1960 150 214 8 chr11 27839933 27840303 -94003553 + RLTR41 LTR ERV1 1 446 0 3 797 1964 235 42 2 chr11 27840599 27841004 -94002852 - MTC LTR MaLR 0 421 1 3 797 285 342 25 57 chr11 27841577 27841735 -94002121 - MIRb SINE MIR -46 222 70 3 797 333 0 0 0 chr11 27841924 27841961 -94001895 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 797 207 0 0 0 chr11 27841995 27842018 -94001838 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 3 797 254 273 0 0 chr11 27842165 27842231 -94001625 - ID4_ SINE ID -16 67 2 3 797 23 0 0 0 chr11 27843467 27843490 -94000366 + AT_rich Low_complexity Low_complexity 1 23 0 3 797 1938 211 15 23 chr11 27843598 27843987 -93999869 - ORR1B1 LTR MaLR -8 386 1 3 797 14113 74 18 6 chr11 27844189 27846935 -93996921 - L1Md_F2 LINE L1 0 6582 3850 3 797 2202 82 8 66 chr11 27846936 27847314 -93996542 - L1Md_F2 LINE L1 -5476 1140 785 3 797 1063 298 51 0 chr11 27847361 27847656 -93996200 + MTE2b LTR MaLR 1 310 -69 3 797 290 210 0 0 chr11 27847870 27847932 -93995924 - Lx8 LINE L1 -992 6481 6420 4 797 318 109 0 18 chr11 27847934 27847990 -93995866 + MTE2b LTR MaLR 325 379 0 3 797 912 268 128 5 chr11 27848200 27848582 -93995274 + Lx8 LINE L1 6128 6556 -917 4 797 776 289 53 28 chr11 27848838 27849159 -93994697 + Lx8 LINE L1 6670 6998 -475 4 797 270 231 30 15 chr11 27849169 27849235 -93994621 + 4.5SRNA scRNA scRNA 20 86 -8 4 797 487 217 38 0 chr11 27849183 27849289 -93994567 + B1_Mus1 SINE Alu 39 148 0 4 797 307 289 183 5 chr11 27849301 27849492 -93994364 + Lx8 LINE L1 7148 7372 -101 4 797 21 36 0 0 chr11 27850490 27850518 -93993338 + AT_rich Low_complexity Low_complexity 1 28 0 4 797 3242 14 0 5 chr11 27851067 27851436 -93992420 - IAPLTR1_Mm LTR ERVK 0 367 1 4 797 13856 22 2 1 chr11 27851436 27853089 -93990767 - IAPEz-int LTR ERVK 0 6481 4827 4 797 29508 25 32 2 chr11 27853075 27856689 -93987167 - IAPEz-int LTR ERVK -2752 3729 8 4 797 3242 14 0 5 chr11 27856689 27857058 -93986798 - IAPLTR1_Mm LTR ERVK 0 367 1 4 797 21 0 0 0 chr11 27857330 27857351 -93986505 + AT_rich Low_complexity Low_complexity 1 21 0 4 797 27749 152 28 26 chr11 27857553 27859457 -93984399 + L1_Mus1 LINE L1 504 2382 -3501 4 797 3102 25 167 0 chr11 27859457 27859864 -93983992 - IAPLTR2_Mm LTR ERVK 0 475 1 4 797 27749 120 15 4 chr11 27859864 27860361 -93983495 + L1_Mus1 LINE L1 2383 2874 -3009 4 797 3266 56 2 0 chr11 27860361 27860756 -93983100 - MTA_Mm LTR MaLR 0 396 1 4 797 27749 120 15 4 chr11 27860756 27862605 -93981251 + L1_Mus1 LINE L1 2875 4732 -1151 4 797 323 0 48 0 chr11 27862605 27862647 -93981209 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 797 27749 95 23 2 chr11 27862647 27864436 -93979420 + L1_Mus1 LINE L1 4733 6564 -3 4 797 270 0 0 0 chr11 27864840 27864870 -93978986 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 797 1103 66 13 0 chr11 27864880 27865032 -93978824 + (GAAA)n Simple_repeat Simple_repeat 1 154 0 4 797 306 283 113 0 chr11 27865050 27865156 -93978700 - MER34 LTR ERV1 -23 519 402 4 797 1199 245 137 31 chr11 27866264 27866681 -93977175 + RMER6B LTR ERVK 1 461 0 4 797 246 289 20 91 chr11 27867250 27867349 -93976507 - MTEa LTR MaLR -287 92 1 4 797 247 243 8 201 chr11 27868552 27868686 -93975170 + MT2A LTR ERVL 1 108 -425 4 797 1223 251 102 39 chr11 27868571 27868945 -93974911 + MTD LTR MaLR 18 405 -14 4 797 267 167 43 32 chr11 27869919 27870012 -93973844 + (TTAA)n Simple_repeat Simple_repeat 1 94 0 4 797 481 328 28 12 chr11 27871219 27871703 -93972153 - RLTR4_MM-int LTR ERV1 -257 7521 7053 4 797 965 371 39 26 chr11 27872948 27873876 -93969980 - RLTR4_MM-int LTR ERV1 -3173 4428 3489 4 797 322 349 57 60 chr11 27873938 27874291 -93969565 - RLTR4_MM-int LTR ERV1 -5131 2475 2124 4 797 346 319 49 59 chr11 27874336 27874738 -93969118 - MuLV-int LTR ERV1 -5198 2408 2108 4 797 303 341 47 38 chr11 27874884 27875201 -93968655 - MuLV-int LTR ERV1 -3367 1696 1377 4 797 377 354 42 30 chr11 27875201 27875450 -93968406 + MMERGLN-int LTR ERV1 3575 3802 -3754 4 797 7931 181 63 86 chr11 27875438 27877588 -93966268 - RLTR45-int LTR ERVK -2947 4297 1643 4 797 4109 62 44 9 chr11 27877588 27878129 -93965727 + LTRIS2 LTR ERV1 5 564 0 4 797 7931 178 54 82 chr11 27878129 27878584 -93965272 - RLTR45-int LTR ERVK -4710 2534 2094 4 797 324 0 0 0 chr11 27878584 27878620 -93965236 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 797 189 0 0 0 chr11 27878620 27878640 -93965216 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 797 405 0 0 0 chr11 27878690 27878735 -93965121 + (TTTTA)n Simple_repeat Simple_repeat 4 48 0 4 797 1700 62 4 0 chr11 27878808 27879035 -93964821 - L1Md_F2 LINE L1 -289 6293 6066 4 797 1186 97 0 6 chr11 27879035 27879211 -93964645 + L1Md_F2 LINE L1 6396 6570 -12 4 797 1830 181 14 30 chr11 27879470 27879835 -93964021 - RLTR9A LTR ERVK 0 368 10 4 797 263 315 34 0 chr11 27879926 27880015 -93963841 - L1_Mur3 LINE L1 -334 5546 5455 4 797 2689 188 20 10 chr11 27880020 27880515 -93963341 + RLTR16 LTR ERVK 6 505 0 4 797 632 231 28 79 chr11 27880985 27881276 -93962580 + RMER3D-int LTR ERVK 1103 1378 -1464 4 797 12046 104 2 1 chr11 27881358 27883915 -93959941 + L1_Mus1 LINE L1 4008 6566 -1 4 797 2858 243 33 65 chr11 27884032 27884777 -93959079 + MYSERV16_I-int LTR ERVK 1562 2105 -737 4 797 443 18 0 18 chr11 27884777 27884834 -93959022 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 797 3134 175 64 1 chr11 27884834 27885569 -93958287 + MYSERV16_I-int LTR ERVK 1531 2821 -21 4 797 37 0 0 0 chr11 27885569 27885606 -93958250 + AT_rich Low_complexity Low_complexity 1 37 0 4 797 2513 197 12 8 chr11 27885620 27886102 -93957754 + RLTR16 LTR ERVK 22 505 0 4 797 2830 249 15 1 chr11 27886210 27886941 -93956915 + Lx4B LINE L1 5779 6519 -539 4 797 1157 307 131 15 chr11 27887295 27887423 -93956433 + Lx7 LINE L1 6631 6762 -934 4 797 596 216 129 35 chr11 27887423 27887624 -93956232 + URR1B DNA MER1_type 5 224 -1 4 797 1157 307 131 15 chr11 27887624 27888097 -93955759 + Lx7 LINE L1 6763 7302 -394 4 797 234 207 22 33 chr11 27888097 27888187 -93955669 + T-rich Low_complexity Low_complexity 1 89 0 4 797 1111 85 0 0 chr11 27888541 27888682 -93955174 + B1_Mus2 SINE Alu 2 142 -5 4 797 273 57 0 0 chr11 27888686 27888721 -93955135 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 797 314 350 32 0 chr11 27889223 27889346 -93954510 + B3 SINE B2 79 205 -11 4 797 22 0 0 0 chr11 27892270 27892292 -93951564 + AT_rich Low_complexity Low_complexity 1 22 0 4 797 7115 249 44 30 chr11 27892335 27894394 -93949462 - Lx7 LINE L1 -6 7690 5603 4 797 1588 151 97 0 chr11 27894396 27894694 -93949162 - ORR1A2 LTR MaLR 0 327 1 4 797 3027 179 29 23 chr11 27894694 27895972 -93947884 - ORR1A2-int LTR MaLR 0 1963 1 4 797 1988 123 34 31 chr11 27895972 27896298 -93947558 - ORR1A2 LTR MaLR 0 327 1 4 797 3947 211 52 34 chr11 27896298 27897382 -93946474 - Lx7 LINE L1 -286 5594 4492 4 797 1129 75 0 14 chr11 27897382 27897530 -93946326 + B1_Mm SINE Alu 1 146 -1 4 797 280 279 24 37 chr11 27897581 27897663 -93946193 - MTC LTR MaLR -50 371 291 4 797 609 245 58 34 chr11 27898082 27898277 -93945579 - RLTR16 LTR ERVK 0 568 353 4 797 1522 271 116 36 chr11 27898284 27898958 -93944898 - Lx9 LINE L1 -925 6719 5992 4 797 1939 233 98 77 chr11 27899036 27899904 -93943952 + L1_Rod LINE L1 4833 5718 -129 4 797 245 29 29 0 chr11 27900860 27900894 -93942962 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 797 459 0 0 0 chr11 27901309 27901360 -93942496 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 797 566 283 0 0 chr11 27901677 27901797 -93942059 + B1_Mur2 SINE Alu 1 120 -29 4 797 493 108 43 0 chr11 27901805 27901898 -93941958 + T-rich Low_complexity Low_complexity 3 99 0 4 797 3268 170 50 10 chr11 27901927 27902521 -93941335 - Lx3B LINE L1 -29 6944 6327 4 797 4062 146 44 8 chr11 27902505 27903293 -93940563 + Lx3B LINE L1 5511 6322 -651 4 797 290 399 5 98 chr11 27903334 27903460 -93940396 + B3 SINE B2 5 120 -96 4 797 1068 144 11 6 chr11 27903460 27903635 -93940221 + B2_Mm2 SINE B2 2 177 -18 4 797 290 399 5 98 chr11 27903635 27903711 -93940145 + B3 SINE B2 121 188 -28 4 797 7510 122 19 32 chr11 27903769 27904804 -93939052 + L1_Mm LINE L1 3633 4648 -1235 4 797 1051 102 0 0 chr11 27904804 27904951 -93938905 - B1_Mus2 SINE Alu 0 147 1 4 797 7510 122 19 32 chr11 27904951 27905199 -93938657 + L1_Mm LINE L1 4649 4900 -983 4 797 1766 112 0 7 chr11 27905167 27905436 -93938420 + L1_Mm LINE L1 5557 5823 -60 4 797 5033 135 12 17 chr11 27905430 27906367 -93937489 - MusHAL1 LINE L1 -1280 1432 501 4 797 22 35 0 0 chr11 27906424 27906453 -93937403 + AT_rich Low_complexity Low_complexity 1 29 0 4 797 9238 105 33 38 chr11 27907033 27907973 -93935883 - MusHAL1 LINE L1 -640 2072 1144 4 797 411 21 0 0 chr11 27907973 27908021 -93935835 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 797 9238 105 33 38 chr11 27908021 27908690 -93935166 - MusHAL1 LINE L1 -1569 1143 472 4 797 854 150 36 0 chr11 27908867 27909007 -93934849 + B1_Mus1 SINE Alu 3 147 -1 4 797 359 325 25 8 chr11 27909113 27909234 -93934622 + B3 SINE B2 89 211 -5 4 797 36 40 0 0 chr11 27909469 27909519 -93934337 + AT_rich Low_complexity Low_complexity 1 50 0 4 797 225 325 33 66 chr11 27909639 27909761 -93934095 + RMER12 LTR ERVK 744 861 -461 4 797 228 361 125 0 chr11 27909856 27909928 -93933928 - ID SINE ID -142 82 2 4 797 1814 209 48 2 chr11 27910932 27911325 -93932531 - Lx LINE L1 -8 6646 6236 4 797 373 127 0 25 chr11 27911345 27911426 -93932430 + Lx3A LINE L1 6896 6974 -7 4 797 216 0 0 0 chr11 27911444 27911468 -93932388 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 797 4551 119 20 1 chr11 27911487 27912408 -93931448 + Lx LINE L1 5311 6247 -407 4 797 379 311 0 16 chr11 27912995 27913116 -93930740 + Lx9 LINE L1 7171 7289 -355 4 797 21 0 0 0 chr11 27916015 27916036 -93927820 + AT_rich Low_complexity Low_complexity 1 21 0 4 99 4920 134 4 3 chr11 27917650 27918418 -93925438 + Lx2 LINE L1 5880 6648 -349 4 798 593 167 9 0 chr11 27918437 27918545 -93925311 + Lx2 LINE L1 6883 6991 -6 4 798 189 0 0 0 chr11 27918546 27918567 -93925289 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 798 331 145 29 0 chr11 27918567 27918636 -93925220 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 798 437 306 85 26 chr11 27919434 27919834 -93924022 + L1MA4 LINE L1 5303 5733 -567 4 798 287 300 23 0 chr11 27920058 27920188 -93923668 + L1MA4 LINE L1 5774 5906 -394 4 798 183 129 0 0 chr11 27920222 27920253 -93923603 + (CATA)n Simple_repeat Simple_repeat 1 31 0 4 798 384 22 0 0 chr11 27920253 27920297 -93923559 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 798 21 36 0 0 chr11 27920683 27920711 -93923145 + AT_rich Low_complexity Low_complexity 1 28 0 4 798 25 75 0 0 chr11 27920797 27920850 -93923006 + AT_rich Low_complexity Low_complexity 1 53 0 4 798 287 293 62 35 chr11 27920883 27921056 -93922800 - B3A SINE B2 -6 192 2 4 798 23 0 0 0 chr11 27921941 27921964 -93921892 + AT_rich Low_complexity Low_complexity 1 23 0 4 798 675 0 0 0 chr11 27923278 27923353 -93920503 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 798 1103 61 0 75 chr11 27924342 27924502 -93919354 + B1_Mus1 SINE Alu 1 148 0 4 798 30 0 0 0 chr11 27924530 27924560 -93919296 + AT_rich Low_complexity Low_complexity 1 30 0 4 798 2057 189 35 39 chr11 27925104 27925566 -93918290 + RMER4B LTR ERVK 5 464 -121 4 798 1899 119 49 13 chr11 27925628 27925932 -93917924 + Lx2 LINE L1 5589 5905 -1095 4 798 3005 167 39 4 chr11 27925932 27926472 -93917384 + Lx LINE L1 6096 6654 0 4 798 1899 156 43 725 chr11 27926472 27926521 -93917335 + Lx2 LINE L1 5906 5945 -1055 4 798 554 246 0 15 chr11 27927401 27927533 -93916323 - L1_Rod LINE L1 -1872 3975 3846 4 798 2124 254 110 32 chr11 27927539 27928469 -93915387 + L1_Rod LINE L1 3026 4027 -1820 4 798 1288 279 52 60 chr11 27928535 27929035 -93914821 - RLTR20B3 LTR ERVK -81 496 1 4 798 1389 262 85 53 chr11 27929038 27929769 -93914087 + L1_Rod LINE L1 4028 4781 -1066 4 798 1452 259 25 53 chr11 27929868 27930348 -93913508 + RLTR20B3 LTR ERVK 38 521 -56 4 798 2296 285 127 43 chr11 27930370 27931915 -93911941 + Lx9 LINE L1 5627 7345 -299 4 798 25 0 0 0 chr11 27932025 27932050 -93911806 + AT_rich Low_complexity Low_complexity 1 25 0 4 798 345 245 160 0 chr11 27932401 27932495 -93911361 - RMER16 LTR ERVK -3 530 422 4 798 246 164 43 129 chr11 27932496 27932566 -93911290 - RMER16 LTR ERVK -469 64 1 4 798 681 316 32 0 chr11 27932602 27932789 -93911067 + B3 SINE B2 24 216 0 4 798 1799 335 66 51 chr11 27933118 27934380 -93909476 + Lx8 LINE L1 6191 7471 -2 4 798 326 197 220 43 chr11 27934384 27934570 -93909286 + L1MC LINE L1 2761 2979 -3167 5 798 27 49 0 0 chr11 27934839 27934880 -93908976 + AT_rich Low_complexity Low_complexity 1 41 0 5 798 231 200 33 0 chr11 27934929 27934989 -93908867 + A-rich Low_complexity Low_complexity 6 67 0 5 798 2386 124 25 25 chr11 27935442 27935846 -93908010 - RLTR9E LTR ERVK 0 409 6 5 798 529 79 0 13 chr11 27935854 27935931 -93907925 - ETnERV2-int LTR ERVK 0 7406 7331 5 798 20565 104 21 20 chr11 27936141 27938670 -93905186 - ETnERV2-int LTR ERVK -977 6429 3937 5 798 255 93 0 0 chr11 27938670 27938713 -93905143 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 798 20565 104 21 20 chr11 27938713 27939171 -93904685 - ETnERV2-int LTR ERVK -3470 3936 3443 5 798 5658 139 19 23 chr11 27939428 27940450 -93903406 - ETnERV2-int LTR ERVK -3958 3448 1995 5 798 4712 162 55 19 chr11 27940475 27941451 -93902405 - ETnERV2-int LTR ERVK -5321 2085 1075 5 798 1397 214 42 39 chr11 27941465 27941850 -93902006 - ETnERV2-int LTR ERVK -2927 387 2 5 798 2582 116 27 10 chr11 27941851 27942253 -93901603 - RLTR9E LTR ERVK 0 409 1 5 798 336 291 115 31 chr11 27942279 27942571 -93901285 + L1M4 LINE L1 4009 4325 -1821 5 798 1284 276 155 25 chr11 27943125 27943609 -93900247 + Lx5 LINE L1 659 1190 -5896 5 798 1434 68 5 16 chr11 27943609 27943787 -93900069 + B2_Mm1a SINE B2 2 180 -13 5 798 432 0 0 0 chr11 27943787 27943835 -93900021 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 5 798 1434 68 5 16 chr11 27943835 27943849 -93900007 + B2_Mm1a SINE B2 181 192 -1 5 798 1099 240 165 8 chr11 27943849 27943918 -93899938 + Lx5 LINE L1 1191 1285 -5801 5 798 994 232 67 95 chr11 27943934 27944291 -93899565 - RLTR20B3 LTR ERVK -15 562 216 5 798 1693 242 58 31 chr11 27944859 27945382 -93898474 - RLTR20B3 LTR ERVK -19 549 25 5 798 1106 142 4 77 chr11 27945389 27945649 -93898207 + L1_Mur2 LINE L1 1270 1510 -4367 5 798 701 256 95 9 chr11 27945644 27945717 -93898139 + Lx5 LINE L1 4750 4835 -1042 5 798 296 60 40 0 chr11 27945717 27945767 -93898089 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 798 701 256 95 9 chr11 27945767 27945925 -93897931 + Lx5 LINE L1 4836 5001 -876 5 798 821 117 8 0 chr11 27946036 27946164 -93897692 + MurSatRep1 Unknown Unknown 612 740 -1397 5 798 4289 111 86 29 chr11 27946187 27946942 -93896914 + RMER17D2 LTR ERVK 12 809 0 5 798 246 191 0 0 chr11 27946942 27946989 -93896867 + MurSatRep1 Unknown Unknown 960 1006 -1131 5 798 389 324 32 33 chr11 27946989 27947440 -93896416 + MurSatRep1 Unknown Unknown 1747 2049 -88 5 798 1285 202 68 76 chr11 27947440 27947836 -93896020 - RLTR9C LTR ERVK 0 393 1 5 798 316 323 25 25 chr11 27947913 27948116 -93895740 + MurSatRep1 Unknown Unknown 1847 2049 -88 5 798 267 309 16 16 chr11 27948056 27948356 -93895500 + MMSAT4 Satellite Satellite 1 300 0 5 798 252 311 16 16 chr11 27948642 27948864 -93894992 + MMSAT4 Satellite Satellite 1 222 -2 5 798 1250 247 6 43 chr11 27949169 27949491 -93894365 + ORR1B1 LTR MaLR 37 346 -48 5 798 4076 228 74 24 chr11 27949506 27951454 -93892402 + Lx5 LINE L1 4991 7058 0 5 798 2372 103 83 18 chr11 27952457 27952843 -93891013 + IAPLTR2a LTR ERVK 1 411 0 5 798 562 269 70 4 chr11 27952913 27953185 -93890671 + L1_Rod LINE L1 2025 2314 -3533 5 798 3497 265 22 28 chr11 27953183 27954151 -93889705 + Lx5 LINE L1 6088 7049 -1 5 798 1650 270 85 57 chr11 27954166 27955092 -93888764 + L1_Rod LINE L1 2312 3268 -2579 5 798 221 0 35 0 chr11 27955092 27955121 -93888735 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5 798 1650 270 85 57 chr11 27955121 27955260 -93888596 + L1_Rod LINE L1 3269 3406 -2441 5 798 198 188 20 40 chr11 27955616 27955716 -93888140 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 798 311 336 8 8 chr11 27955852 27955972 -93887884 + Lx9 LINE L1 6372 6491 -1153 5 798 1104 70 0 14 chr11 27955984 27956129 -93887727 + B1_Mus2 SINE Alu 2 144 -3 5 798 716 69 20 0 chr11 27956129 27956231 -93887625 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 5 798 22 0 0 0 chr11 27956326 27956348 -93887508 + AT_rich Low_complexity Low_complexity 1 22 0 5 798 726 307 142 44 chr11 27956409 27956866 -93886990 + Lx8 LINE L1 6231 6732 -741 5 798 520 315 82 39 chr11 27957083 27957314 -93886542 - MTE2b LTR MaLR -138 241 1 5 798 1562 167 93 68 chr11 27957336 27957690 -93886166 + ORR1B1 LTR MaLR 18 380 -14 5 798 552 120 0 0 chr11 27958150 27958250 -93885606 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 798 402 21 0 0 chr11 27958250 27958297 -93885559 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 798 545 250 37 15 chr11 27958380 27958514 -93885342 + ORR1A4 LTR MaLR 96 232 -97 5 798 2459 159 54 43 chr11 27958573 27959014 -93884842 - RLTR41 LTR ERV1 0 446 1 5 798 302 320 13 13 chr11 27959240 27959395 -93884461 - MuRRS4-int LTR ERV1 -246 4817 4663 5 798 273 371 0 0 chr11 27959880 27959985 -93883871 - RLTR4_MM-int LTR ERV1 -2020 5581 5477 5 798 1776 247 39 14 chr11 27960166 27960654 -93883202 - MuRRS4-int LTR ERV1 -1031 4032 3533 5 798 252 77 0 0 chr11 27961120 27961159 -93882697 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 798 626 341 16 9 chr11 27961183 27961507 -93882349 - MuRRS4-int LTR ERV1 -3290 4316 3970 5 798 399 254 37 38 chr11 27961708 27961901 -93881955 - MuRRS4-int LTR ERV1 -5448 2330 2079 5 798 339 326 43 26 chr11 27962089 27962136 -93881720 - MuRRS4-int LTR ERV1 -5786 1815 1767 5 798 1065 145 0 0 chr11 27962136 27962315 -93881541 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 798 697 342 52 39 chr11 27962315 27962936 -93880920 - MuRRS4-int LTR ERV1 -5784 1772 1159 5 798 277 304 0 0 chr11 27963442 27963534 -93880322 - MuRRS4-int LTR ERV1 -6878 678 587 5 798 2570 171 2 51 chr11 27964013 27964482 -93879374 - RLTR41 LTR ERV1 0 446 1 5 798 8127 29 2 1 chr11 27964604 27965667 -93878189 - L1Md_F3 LINE L1 -2 6582 5519 5 798 3059 98 27 8 chr11 27965759 27966224 -93877632 + L1Md_F2 LINE L1 6118 6703 -270 5 798 1489 189 61 124 chr11 27966238 27966648 -93877208 + RLTR23 LTR ERV1 47 430 0 5 798 2593 175 28 13 chr11 27967697 27968166 -93875690 + RLTR26 LTR ERVK 1 476 -166 5 798 705 161 0 0 chr11 27968187 27968299 -93875557 + RLTR26 LTR ERVK 531 642 0 5 798 292 299 57 35 chr11 27968335 27968545 -93875311 + MuRRS-int LTR ERV1 1255 1605 -5951 5 798 404 330 39 50 chr11 27969472 27969754 -93874102 + MuRRS-int LTR ERV1 2525 2910 -4691 5 798 39 98 0 0 chr11 27970491 27970614 -93873242 + AT_rich Low_complexity Low_complexity 1 123 0 5 798 587 320 38 28 chr11 27970900 27971520 -93872336 + MYSERV-int LTR ERVK 3878 4117 -2433 5 798 516 290 122 43 chr11 27971612 27972204 -93871652 + MYSERV16_I-int LTR ERVK 260 755 -1571 5 798 228 362 23 23 chr11 27972206 27972339 -93871517 + RMER4A LTR ERVK 276 408 -58 5 798 2998 224 36 39 chr11 27972341 27973354 -93870502 + MYSERV6-int LTR ERVK 7769 8758 -201 5 798 2464 218 48 36 chr11 27973354 27973935 -93869921 + RLTR1D LTR ERV1 1 588 -17 5 798 356 175 0 41 chr11 27973953 27974043 -93869813 + MYSERV6-int LTR ERVK 6335 6409 -141 5 798 307 197 0 53 chr11 27974047 27974122 -93869734 + RLTR11B LTR ERVK 219 289 -164 5 798 358 380 116 0 chr11 27974310 27974586 -93869270 + Lx8 LINE L1 6813 7120 -353 5 798 24 53 0 0 chr11 27974956 27974994 -93868862 + AT_rich Low_complexity Low_complexity 1 38 0 5 798 532 325 109 9 chr11 27975146 27975357 -93868499 + B4A SINE B4 2 233 -59 5 798 3484 207 133 37 chr11 27975512 27976441 -93867415 - RLTR25B LTR ERVK -9 1019 1 5 798 2501 113 131 21 chr11 27976516 27976950 -93866906 + RLTR45 LTR ERVK 1 482 0 5 798 267 290 0 21 chr11 27976968 27977063 -93866793 + B4A SINE B4 195 287 -5 5 798 276 100 0 0 chr11 27977066 27977106 -93866750 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 798 576 29 0 0 chr11 27977106 27977175 -93866681 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 798 321 26 0 0 chr11 27977632 27977670 -93866186 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 798 211 246 108 0 chr11 27979104 27979169 -93864687 + MIRb SINE MIR 36 107 -161 5 798 3450 37 0 128 chr11 27979595 27980095 -93863761 + RLTR10C LTR ERVK 1 436 0 5 798 28 0 0 0 chr11 27981234 27981262 -93862594 + AT_rich Low_complexity Low_complexity 1 28 0 5 798 377 301 79 30 chr11 27981910 27982177 -93861679 - MER63C DNA AcHobo -55 875 596 5 798 792 178 5 164 chr11 27982186 27982394 -93861462 - RLTR23 LTR ERV1 -254 176 2 5 798 316 322 74 13 chr11 27982583 27982813 -93861043 - RNERVK23-int LTR ERVK -563 7654 7411 5 798 712 294 126 22 chr11 27984720 27985141 -93858715 - RLTR6-int LTR ERV1 -2494 5284 4757 5 798 265 293 73 61 chr11 27985887 27986134 -93857722 - MURVY-int LTR ERV1 -2631 2059 1810 5 798 264 355 29 33 chr11 27986471 27986681 -93857175 - MURVY-int LTR ERV1 -3609 1454 1246 5 798 276 288 26 26 chr11 27986674 27986788 -93857068 - MURVY-int LTR ERV1 -6172 1280 1167 5 798 1433 231 23 114 chr11 27987700 27988173 -93855683 - RLTR23 LTR ERV1 0 430 1 5 798 23 0 0 0 chr11 27988411 27988434 -93855422 + AT_rich Low_complexity Low_complexity 1 23 0 5 798 7162 157 6 5 chr11 27988575 27990253 -93853603 + Lx LINE L1 4465 6145 -509 5 798 1036 153 17 6 chr11 27991953 27992130 -93851726 - B2_Mm2 SINE B2 -15 180 2 5 798 4202 137 18 7 chr11 27992271 27993057 -93850799 - Lx3B LINE L1 -651 6322 5531 5 798 3543 157 36 9 chr11 27993061 27993691 -93850165 + Lx3B LINE L1 6327 6973 0 5 798 237 163 0 0 chr11 27993691 27993740 -93850116 + A-rich Low_complexity Low_complexity 2 50 0 5 798 638 250 0 0 chr11 27993753 27993873 -93849983 - B1_Mur2 SINE Alu -29 120 1 5 798 189 0 0 0 chr11 27994729 27994750 -93849106 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 798 614 216 72 0 chr11 27995407 27995574 -93848282 - L1_Mm LINE L1 -849 5034 4856 5 798 3918 117 26 22 chr11 27995559 27996713 -93847143 + L1VL4 LINE L1 427 1588 -1971 5 798 2834 36 3 3 chr11 27997283 27997620 -93846236 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 798 17895 48 27 16 chr11 27997620 28000000 -93843856 + IAPEz-int LTR ERVK 8 2414 -4067 5 798 36233 15 1 1 chr11 28000000 28004066 -93839790 + IAPEz-int LTR ERVK 2415 6481 0 1 798 2806 36 3 3 chr11 28004066 28004403 -93839453 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 798 267 79 0 0 chr11 28004424 28004462 -93839394 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2 798 1085 90 0 0 chr11 28004462 28004606 -93839250 - B1_Mm SINE Alu -2 145 2 3 798 202 267 65 32 chr11 28004612 28004674 -93839182 - MIR SINE MIR -106 156 93 4 798 20737 219 34 25 chr11 28005392 28006000 -93837856 + Lx2B LINE L1 817 1435 -4451 5 798 2058 149 84 3 chr11 28006000 28006370 -93837486 - MTB LTR MaLR 0 400 1 6 798 20737 187 33 42 chr11 28006370 28007719 -93836137 + Lx2B LINE L1 1436 2679 -3207 5 798 1056 95 0 57 chr11 28007719 28007876 -93835980 + B1_Mus1 SINE Alu 1 148 0 7 798 20737 187 33 42 chr11 28007876 28009175 -93834681 + Lx2B LINE L1 2680 4014 -1872 5 798 2545 103 46 15 chr11 28009175 28009570 -93834286 + RLTR9E LTR ERVK 3 409 0 8 798 20737 187 33 42 chr11 28009570 28010738 -93833118 + Lx2B LINE L1 4015 5192 -694 5 798 396 55 0 0 chr11 28010738 28010793 -93833063 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 9 798 20737 192 22 24 chr11 28010793 28012587 -93831269 + Lx2B LINE L1 5193 7000 0 5 798 47 44 0 0 chr11 28012643 28012711 -93831145 + AT_rich Low_complexity Low_complexity 1 68 0 1 798 2680 260 31 20 chr11 28013086 28013795 -93830061 - Lx6 LINE L1 -169 7291 6575 1 798 1105 211 14 0 chr11 28013790 28014013 -93829843 + Lx7 LINE L1 6830 7055 -641 1 798 531 256 8 16 chr11 28014035 28014158 -93829698 - Lx6 LINE L1 -894 6566 6445 1 798 2943 241 59 33 chr11 28014153 28014756 -93829100 - Lx6 LINE L1 -6628 1100 470 1 798 288 0 0 0 chr11 28014756 28014788 -93829068 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 1 798 2943 241 59 33 chr11 28014788 28014982 -93828874 - Lx6 LINE L1 -7259 469 282 1 798 267 268 54 34 chr11 28015019 28015166 -93828690 - L1MC4a LINE L1 -1637 6245 6096 1 798 3260 174 108 37 chr11 28015212 28015321 -93828535 - L1_Mur3 LINE L1 -3686 2194 2072 1 798 279 0 0 0 chr11 28015321 28015352 -93828504 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 798 3260 174 108 37 chr11 28015352 28015392 -93828464 - L1_Mur3 LINE L1 -3809 2071 2050 1 798 183 129 0 0 chr11 28015392 28015423 -93828433 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 798 3790 198 99 20 chr11 28015423 28017020 -93826836 - L1_Mur3 LINE L1 -3831 2049 322 1 798 1311 254 124 70 chr11 28017044 28017544 -93826312 + RMER2 LTR ERV1 41 567 0 1 798 635 288 163 0 chr11 28017544 28017777 -93826079 - L1_Mur3 LINE L1 -7403 325 55 1 798 184 288 86 12 chr11 28018919 28019000 -93824856 - MIR SINE MIR -106 162 72 1 798 3059 83 2 2 chr11 28019174 28019584 -93824272 - L1_Mus2 LINE L1 -3 6563 6154 2 798 9546 99 50 1 chr11 28019586 28021238 -93822618 + L1_Mus2 LINE L1 4439 6142 -496 2 798 1828 179 23 8 chr11 28021235 28021619 -93822237 + L1_Mur2 LINE L1 4267 4656 -1221 2 798 204 40 0 0 chr11 28021671 28021696 -93822160 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 2 798 370 203 14 0 chr11 28021728 28021802 -93822054 - Lx5 LINE L1 -633 6417 6343 2 798 7253 152 30 15 chr11 28021846 28023622 -93820234 - Lx2 LINE L1 -205 6792 4988 2 798 267 31 0 0 chr11 28023622 28023654 -93820202 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 798 5496 196 19 8 chr11 28023654 28023895 -93819961 - Lx2 LINE L1 -896 4987 4743 2 798 3203 154 19 38 chr11 28023898 28024843 -93819013 - L1VL4 LINE L1 -2356 1203 281 2 798 4178 27 12 2 chr11 28024946 28025434 -93818422 + MT2_Mm LTR ERVL 1 493 0 2 798 4176 53 0 4 chr11 28026357 28026883 -93816973 + L1Md_F3 LINE L1 6061 6584 0 2 798 26 0 0 0 chr11 28027425 28027451 -93816405 + AT_rich Low_complexity Low_complexity 1 26 0 2 798 344 234 0 0 chr11 28027518 28027582 -93816274 + ORR1B1 LTR MaLR 323 386 -8 3 798 360 322 44 64 chr11 28027714 28028009 -93815847 - L1MC LINE L1 -2277 3869 3581 3 798 32317 135 50 36 chr11 28028611 28030377 -93813479 + L1_Mus2 LINE L1 168 1966 -3917 3 798 387 0 0 0 chr11 28030377 28030420 -93813436 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 798 32317 83 16 25 chr11 28030420 28034003 -93809853 + L1_Mus2 LINE L1 1967 5584 -299 3 798 6664 93 32 18 chr11 28034003 28034985 -93808871 + L1Md_F2 LINE L1 5587 6581 -1 3 798 32317 83 16 25 chr11 28034985 28035069 -93808787 + L1_Mus2 LINE L1 5585 5598 -285 3 798 4449 89 21 6 chr11 28035069 28035692 -93808164 - L1_Mus2 LINE L1 -1 6565 5934 3 798 32317 83 16 25 chr11 28035692 28035879 -93807977 + L1_Mus2 LINE L1 5599 5784 -99 3 798 634 35 0 0 chr11 28035879 28035965 -93807891 + L1Md_T LINE L1 6496 6581 -1 3 798 32317 53 53 68 chr11 28035965 28036100 -93807756 + L1_Mus2 LINE L1 5785 5916 -650 3 798 1095 89 0 0 chr11 28036466 28036612 -93807244 + B1_Mus1 SINE Alu 1 146 -2 3 798 254 191 0 0 chr11 28036853 28036900 -93806956 - ORR1D2 LTR MaLR 0 370 324 3 798 1770 188 71 3 chr11 28036896 28037232 -93806624 - RLTR21 LTR ERVK -1213 359 1 3 798 685 213 8 0 chr11 28037533 28037660 -93806196 + B1_Mus2 SINE Alu 5 132 -15 3 798 206 70 16 66 chr11 28038197 28038258 -93805598 + T-rich Low_complexity Low_complexity 4 61 0 4 798 301 313 122 70 chr11 28038697 28038927 -93804929 - MLT1A LTR MaLR -64 310 69 4 798 705 311 36 97 chr11 28038994 28039272 -93804584 + MTEa LTR MaLR 1 261 -118 4 798 1991 114 47 6 chr11 28039291 28039609 -93804247 + Lx3A LINE L1 6651 6981 0 4 798 225 0 0 0 chr11 28039613 28039638 -93804218 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 798 225 0 0 0 chr11 28039660 28039685 -93804171 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 4 798 658 249 70 23 chr11 28040261 28040475 -93803381 + Lx9 LINE L1 7207 7430 -214 4 798 4245 58 41 7 chr11 28040475 28041017 -93802839 - LTRIS2 LTR ERV1 0 564 5 4 798 969 232 26 0 chr11 28041020 28041248 -93802608 - RLTR1B-int LTR ERV1 -42 5021 4788 4 798 1171 191 97 8 chr11 28041328 28041715 -93802141 - RLTR1B-int LTR ERV1 -486 2813 2669 4 798 4322 70 46 124 chr11 28041702 28042457 -93801399 - RLTR1B-int LTR ERV1 -744 2555 1860 4 798 4932 151 61 8 chr11 28042448 28043895 -93799961 - RLTR1B-int LTR ERV1 -3216 1847 761 4 798 4594 140 20 13 chr11 28043887 28044638 -93799218 - RMER16-int LTR ERVK -3961 1445 690 4 798 1002 124 78 17 chr11 28044624 28044804 -93799052 - RMER16-int LTR ERVK -5075 331 141 4 798 698 133 55 13 chr11 28045151 28045322 -93798534 - RLTR1B-int LTR ERV1 -3006 293 63 4 798 4102 65 42 7 chr11 28045468 28046009 -93797847 - LTRIS2 LTR ERV1 0 564 5 5 798 536 168 204 17 chr11 28046011 28046187 -93797669 + Lx9 LINE L1 7427 7635 -9 4 798 233 246 35 0 chr11 28046351 28046408 -93797448 + GA-rich Low_complexity Low_complexity 2 60 0 5 798 524 307 48 12 chr11 28046459 28046627 -93797229 + B3A SINE B2 7 180 -18 5 798 243 0 0 0 chr11 28047269 28047296 -93796560 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 798 477 0 0 0 chr11 28047492 28047545 -93796311 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 798 307 296 49 0 chr11 28048351 28048432 -93795424 - B1F SINE Alu -56 93 9 5 798 25 65 0 0 chr11 28048906 28048952 -93794904 + AT_rich Low_complexity Low_complexity 1 46 0 5 799 517 310 71 28 chr11 28049585 28049837 -93794019 - Lx8 LINE L1 -227 7246 6984 5 799 484 385 98 48 chr11 28050912 28051308 -93792548 + MLT2B3 LTR ERVL 85 500 -54 5 799 1053 141 19 11 chr11 28051315 28051582 -93792274 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 5 799 222 37 0 0 chr11 28051872 28051899 -93791957 + (CAAG)n Simple_repeat Simple_repeat 4 30 0 6 799 1017 49 21 0 chr11 28052809 28052953 -93790903 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 6 799 21 0 0 0 chr11 28053128 28053149 -93790707 + AT_rich Low_complexity Low_complexity 1 21 0 6 799 266 303 130 10 chr11 28053184 28053484 -93790372 - L1MA9 LINE L1 -86 6226 5891 6 799 340 277 69 8 chr11 28053996 28054127 -93789729 - Lx2B LINE L1 0 7000 6862 6 799 6780 178 56 5 chr11 28054114 28055240 -93788616 - L1_Mur1 LINE L1 -676 3236 2046 6 799 405 0 0 0 chr11 28055240 28055285 -93788571 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 799 6780 178 56 5 chr11 28055285 28055651 -93788205 - L1_Mur1 LINE L1 -1867 2045 1669 6 799 1400 223 31 129 chr11 28055676 28056296 -93787560 + RLTR31_Mur LTR ERVK 11 549 -4 6 799 2569 192 19 1 chr11 28056300 28057178 -93786678 - L1_Mur1 LINE L1 -2219 1693 796 6 799 241 293 0 0 chr11 28059625 28059683 -93784173 + ID4_ SINE ID 12 69 -14 6 799 222 150 0 0 chr11 28059883 28059923 -93783933 + (A)n Simple_repeat Simple_repeat 1 40 0 6 799 6215 204 44 38 chr11 28060520 28062751 -93781105 + L1VL4 LINE L1 103 2254 -1361 7 799 191 61 0 29 chr11 28062769 28062803 -93781053 + (CAAAAA)n Simple_repeat Simple_repeat 1 33 0 7 799 9656 184 19 15 chr11 28062812 28064829 -93779027 + L1_Mur2 LINE L1 3471 5495 -382 7 799 2861 182 38 20 chr11 28064829 28065385 -93778471 - RLTR17 LTR ERVK 0 692 127 7 799 5570 204 82 48 chr11 28065415 28067058 -93776798 - RMER3D-int LTR ERVK -2 2840 1141 7 799 762 188 84 151 chr11 28067058 28067403 -93776453 + RLTRETN_Mm LTR ERVK 1 322 0 7 799 3683 152 45 68 chr11 28067407 28068690 -93775166 + MMETn-int LTR ERVK 3 2077 -5329 7 799 2604 129 27 54 chr11 28068751 28069327 -93774529 + MMETn-int LTR ERVK 1730 2180 -2664 7 799 4868 164 36 23 chr11 28069557 28071592 -93772264 + MMETn-int LTR ERVK 2357 4085 -3321 7 799 1611 129 8 4 chr11 28071565 28071814 -93772042 + ETnERV3-int LTR ERVK 5529 5778 -30 7 799 1523 226 192 9 chr11 28071827 28072280 -93771576 + RLTR13D6 LTR ERVK 1 537 -365 7 799 484 115 0 49 chr11 28072280 28072362 -93771494 + MMETn-int LTR ERVK 7329 7406 0 7 799 988 171 46 144 chr11 28072375 28072723 -93771133 + RLTRETN_Mm LTR ERVK 9 322 0 7 799 305 218 57 57 chr11 28072724 28072865 -93770991 - RMER3D-int LTR ERVK -1697 1145 1005 7 799 419 216 28 62 chr11 28072875 28073053 -93770803 - RMER3D-int LTR ERVK -1991 851 680 7 799 623 202 150 69 chr11 28073291 28073551 -93770305 - RMER3D-int LTR ERVK -2072 770 490 7 799 509 188 42 25 chr11 28073588 28073708 -93770148 - RMER3D-int LTR ERVK -2232 610 489 7 799 1038 220 112 36 chr11 28073797 28074157 -93769699 - RMER3D-int LTR ERVK -1993 849 149 7 799 6777 22 1 0 chr11 28074189 28075437 -93768419 + L1Md_T LINE L1 5101 6349 -233 7 799 3438 23 0 0 chr11 28075433 28075831 -93768025 + L1_Mm LINE L1 4791 5188 -695 8 799 26 82 0 0 chr11 28076196 28076257 -93767599 + AT_rich Low_complexity Low_complexity 1 61 0 8 799 18983 118 7 2 chr11 28077227 28080718 -93763138 - L1_Mus1 LINE L1 0 6567 3058 8 799 219 69 0 0 chr11 28080718 28080747 -93763109 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 799 18983 127 9 2 chr11 28080747 28080925 -93762931 - L1_Mus1 LINE L1 -2826 3057 2879 8 799 7940 56 3 0 chr11 28080914 28082328 -93761528 - L1Md_F2 LINE L1 -1 6581 5162 8 799 9804 143 28 9 chr11 28082315 28084629 -93759227 - L1_Mus1 LINE L1 -3000 2883 524 8 799 23 68 0 0 chr11 28085098 28085142 -93758714 + AT_rich Low_complexity Low_complexity 1 44 0 8 799 306 331 135 74 chr11 28085570 28085921 -93757935 + MLT1E2 LTR MaLR 28 457 -223 8 799 2641 107 5 15 chr11 28086763 28087171 -93756685 - RLTR9E LTR ERVK 0 409 6 8 799 437 92 0 62 chr11 28087188 28087269 -93756587 - ETnERV2-int LTR ERVK 0 7406 7331 8 799 3256 132 13 24 chr11 28087467 28088134 -93755722 - ETnERV2-int LTR ERVK -1179 6227 5809 8 799 273 289 14 48 chr11 28088208 28088315 -93755541 + LTR16B2 LTR ERVL 350 454 -9 8 799 4081 59 10 2 chr11 28089073 28089581 -93754275 - RLTR1B LTR ERV1 0 512 1 8 799 258 105 0 0 chr11 28090861 28090899 -93752957 + (T)n Simple_repeat Simple_repeat 1 38 0 9 799 184 367 22 22 chr11 28092719 28092811 -93751045 - MIRm SINE MIR -130 146 55 9 799 238 98 39 0 chr11 28093661 28093712 -93750144 + (TTG)n Simple_repeat Simple_repeat 1 53 0 9 799 878 128 68 0 chr11 28093712 28093845 -93750011 - B1_Mus1 SINE Alu -6 142 1 9 799 1020 136 0 0 chr11 28093931 28094107 -93749749 + (GGA)n Simple_repeat Simple_repeat 3 178 0 9 799 24 53 0 0 chr11 28096172 28096210 -93747646 + AT_rich Low_complexity Low_complexity 1 38 0 9 799 834 85 14 21 chr11 28096310 28096454 -93747402 - L1_Mus3 LINE L1 0 6638 6496 9 799 646 49 0 0 chr11 28096455 28096536 -93747320 + L1_Mus3 LINE L1 6325 6405 -233 9 799 2009 129 9 14 chr11 28096982 28097329 -93746527 + L1Md_A LINE L1 6236 6580 -2 9 799 22 56 0 0 chr11 28097526 28097562 -93746294 + AT_rich Low_complexity Low_complexity 1 36 0 9 799 1242 98 0 21 chr11 28098155 28098342 -93745514 + B2_Mm2 SINE B2 5 187 -8 9 799 445 162 0 59 chr11 28099292 28099377 -93744479 - 4.5SRNA scRNA scRNA -14 80 1 1 799 4153 97 21 18 chr11 28099377 28100007 -93743849 + L1_Mus4 LINE L1 5998 6629 -7 1 799 212 59 0 29 chr11 28100011 28100046 -93743810 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 799 441 0 0 0 chr11 28100910 28100959 -93742897 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 799 184 356 60 9 chr11 28101460 28101576 -93742280 + MIRm SINE MIR 45 166 -110 1 799 1188 185 7 116 chr11 28102313 28102588 -93741268 - RLTR26 LTR ERVK -86 556 312 1 799 4558 60 2 3 chr11 28102597 28103178 -93740678 - L1_Mus1 LINE L1 0 6567 5988 1 799 512 0 48 0 chr11 28103178 28103240 -93740616 + L1_Mus1 LINE L1 5943 6007 -560 1 799 1727 142 15 70 chr11 28103243 28103585 -93740271 - RLTR26 LTR ERVK -319 323 1 1 799 198 107 0 111 chr11 28104001 28104064 -93739792 + G-rich Low_complexity Low_complexity 5 60 0 1 799 570 238 203 6 chr11 28104087 28104269 -93739587 - Lx8 LINE L1 -958 6515 6298 1 799 198 0 0 0 chr11 28104269 28104291 -93739565 + (T)n Simple_repeat Simple_repeat 1 22 0 1 799 1180 68 0 0 chr11 28104291 28104438 -93739418 - B1_Mus2 SINE Alu 0 147 1 1 799 629 279 3 20 chr11 28104506 28104685 -93739171 - B3 SINE B2 -26 169 2 1 799 326 287 0 0 chr11 28104686 28104773 -93739083 - Lx8 LINE L1 -1204 6269 6183 1 799 717 265 53 17 chr11 28105026 28105268 -93738588 - Lx8 LINE L1 -252 5926 5622 1 799 249 330 152 0 chr11 28105394 28105512 -93738344 + ID_B1 SINE B4 81 216 -8 1 799 401 338 14 40 chr11 28105716 28105864 -93737992 - ID_B1 SINE B4 0 224 81 1 799 261 330 83 34 chr11 28106265 28106469 -93737387 - MIRb SINE MIR -35 233 20 1 799 212 125 42 0 chr11 28108593 28108641 -93735215 + A-rich Low_complexity Low_complexity 4 53 0 1 799 496 269 84 42 chr11 28108682 28109016 -93734840 - L1M4 LINE L1 -1417 4729 4382 1 799 27 29 0 0 chr11 28109151 28109185 -93734671 + AT_rich Low_complexity Low_complexity 1 34 0 1 799 518 196 75 0 chr11 28109304 28109411 -93734445 - ORR1A2 LTR MaLR -1 326 212 1 799 1188 229 66 0 chr11 28109476 28109734 -93734122 - ORR1C1 LTR MaLR -8 370 96 1 799 1914 108 83 46 chr11 28109737 28110085 -93733771 - RLTR10B2 LTR ERVK 0 365 5 1 799 478 215 34 16 chr11 28110080 28110204 -93733652 - ORR1C1 LTR MaLR -219 140 8 1 799 3807 255 58 81 chr11 28110214 28110953 -93732903 - ORR1C1-int LTR MaLR -6 1503 782 1 799 1027 88 6 58 chr11 28110953 28111109 -93732747 - B1_Mus1 SINE Alu 0 148 1 1 799 3807 255 58 81 chr11 28111109 28111506 -93732350 - ORR1C1-int LTR MaLR -728 781 391 1 799 868 74 139 0 chr11 28111506 28111628 -93732228 + B1_Mm SINE Alu 1 139 -8 1 799 255 31 0 0 chr11 28111628 28111660 -93732196 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 799 3807 255 58 81 chr11 28111660 28111925 -93731931 - ORR1C1-int LTR MaLR -1119 390 133 1 799 1785 241 17 16 chr11 28111932 28112417 -93731439 - Lx3C LINE L1 -125 6925 6375 1 799 939 146 0 0 chr11 28112446 28112604 -93731252 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 1 799 7289 152 13 8 chr11 28112628 28113911 -93729945 - Lx3A LINE L1 -9 6972 5683 1 799 10864 94 13 5 chr11 28113912 28115575 -93728281 + Lx3_Mus LINE L1 4250 5921 -1088 1 799 1407 188 0 3 chr11 28115573 28115882 -93727974 - L1_Mur2 LINE L1 -2442 3435 3128 1 799 590 26 13 0 chr11 28117061 28117137 -93726719 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 799 212 333 99 27 chr11 28117316 28117427 -93726429 + PB1D7 SINE Alu 1 119 -1 1 799 530 278 56 0 chr11 28117427 28117553 -93726303 + RSINE1 SINE B4 4 136 -29 1 799 423 293 89 15 chr11 28117829 28118041 -93725815 - RLTR11A LTR ERVK -282 246 4 1 799 5006 199 30 23 chr11 28118042 28118982 -93724874 - MYSERV16_I-int LTR ERVK -1 2325 1360 1 799 1770 72 4 4 chr11 28118982 28119219 -93724637 - L1_Mus2 LINE L1 0 6566 6330 1 799 5006 199 30 23 chr11 28119219 28119529 -93724327 - MYSERV16_I-int LTR ERVK -967 1359 1067 1 799 346 261 70 37 chr11 28119541 28119657 -93724199 - RMER4A LTR ERVK -31 554 328 1 799 717 318 37 65 chr11 28119658 28120149 -93723707 - RLTR11A LTR ERVK -51 477 1 1 799 224 304 0 0 chr11 28120371 28120440 -93723416 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 799 340 390 0 17 chr11 28121716 28121836 -93722020 + B3 SINE B2 3 120 -96 1 799 290 224 88 79 chr11 28121894 28122122 -93721734 + Lx7 LINE L1 7311 7540 -156 1 799 225 65 0 0 chr11 28122135 28122166 -93721690 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 799 203 167 0 0 chr11 28122187 28122229 -93721627 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 799 216 0 0 0 chr11 28122229 28122253 -93721603 + (CAGAGA)n Simple_repeat Simple_repeat 6 29 0 1 799 24 0 0 0 chr11 28122302 28122326 -93721530 + AT_rich Low_complexity Low_complexity 1 24 0 1 799 183 367 80 40 chr11 28122986 28123111 -93720745 + MIR SINE MIR 18 147 -115 1 799 1958 160 79 5 chr11 28123712 28124462 -93719394 + L1VL2 LINE L1 450 1268 -2347 1 799 506 230 25 57 chr11 28124462 28124489 -93719367 + ID_B1 SINE B4 65 216 -8 1 799 930 78 8 8 chr11 28124489 28124619 -93719237 + B1_Mus1 SINE Alu 11 140 -8 1 799 6748 104 19 44 chr11 28124621 28126190 -93717666 + L1_Mus2 LINE L1 5062 6565 -1 1 799 7635 157 22 4 chr11 28126229 28127574 -93716282 + Lx2A1 LINE L1 5587 6955 -53 1 799 16569 172 4 26 chr11 28127570 28129150 -93714706 - L1Md_F LINE L1 -1294 4592 3056 1 799 306 0 0 0 chr11 28129150 28129184 -93714672 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 799 16569 169 5 65 chr11 28129184 28131649 -93712207 - L1Md_F LINE L1 -2831 3055 725 1 799 392 250 32 16 chr11 28131658 28131784 -93712072 - L1Md_F LINE L1 -5814 802 675 1 799 501 246 33 143 chr11 28131931 28132267 -93711589 - L1VL1 LINE L1 -6056 366 68 1 799 3488 228 63 21 chr11 28132269 28133684 -93710172 - Lx6 LINE L1 -1091 6369 4885 1 799 749 199 29 0 chr11 28133822 28133958 -93709898 - B1_Mur1 SINE Alu -1 148 9 1 799 36332 42 0 3 chr11 28134063 28140322 -93703534 - L1Md_T LINE L1 0 6585 251 1 799 4228 221 40 52 chr11 28140322 28141181 -93702675 - Lx6 LINE L1 -1003 4877 4031 1 799 216 0 0 0 chr11 28141181 28141205 -93702651 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 799 4228 221 40 52 chr11 28141205 28141659 -93702197 - Lx6 LINE L1 -1850 4030 3580 1 799 6116 140 40 5 chr11 28141691 28142801 -93701055 + Lx2 LINE L1 5453 6641 -356 1 799 1270 152 28 0 chr11 28142803 28143014 -93700842 + Lx2 LINE L1 6775 6991 -6 1 799 482 185 25 25 chr11 28143029 28143151 -93700705 - Lx6 LINE L1 -2291 3589 3468 1 799 1057 184 203 9 chr11 28143165 28143499 -93700357 - Lx4B LINE L1 -1 7057 6659 1 799 12700 148 99 8 chr11 28143497 28143533 -93700323 + L1_Mus2 LINE L1 3115 3148 -2735 1 799 207 0 0 0 chr11 28143533 28143556 -93700300 + (TTA)n Simple_repeat Simple_repeat 3 25 0 1 799 12700 148 99 8 chr11 28143556 28143905 -93699951 + L1_Mus2 LINE L1 3149 3496 -2387 1 799 345 24 0 0 chr11 28143905 28143947 -93699909 + (CAA)n Simple_repeat Simple_repeat 2 43 0 1 799 12700 132 65 7 chr11 28143947 28146779 -93697077 + L1_Mus2 LINE L1 3497 6564 -2 1 799 4270 159 2 33 chr11 28147161 28147330 -93696526 + L1_Mus3 LINE L1 5099 5265 -618 1 799 1181 49 7 0 chr11 28147330 28147474 -93696382 + B1_Mm SINE Alu 3 147 0 1 799 7103 104 3 34 chr11 28147474 28148891 -93694965 + L1_Mus3 LINE L1 5266 6631 -7 1 799 3786 185 33 35 chr11 28148891 28149748 -93694108 + MYSERV16_I-int LTR ERVK 66 920 -1406 1 799 3869 194 23 16 chr11 28149754 28150638 -93693218 + MYSERV16_I-int LTR ERVK 1437 2326 0 1 799 1517 246 113 47 chr11 28150643 28151112 -93692744 + RLTR20B3 LTR ERVK 22 521 -56 1 799 317 173 49 0 chr11 28151147 28151228 -93692628 - L1_Mur3 LINE L1 -6538 1174 1090 1 799 382 260 70 51 chr11 28151291 28151506 -93692350 - L1_Mur3 LINE L1 -6622 1090 872 1 799 454 273 108 31 chr11 28151635 28151858 -93691998 + L1MA7 LINE L1 5826 6065 -226 1 799 5673 49 7 1 chr11 28153195 28153907 -93689949 - L1Md_F2 LINE L1 0 6582 5867 1 799 262 304 161 28 chr11 28154406 28154728 -93689128 - Lx8 LINE L1 -4 7469 7105 1 799 1276 229 83 0 chr11 28154780 28155094 -93688762 + L1_Mur3 LINE L1 49 388 -7340 1 799 1508 278 60 53 chr11 28155097 28155722 -93688134 + RLTR18B LTR ERVK 7 523 -93 1 799 1387 190 155 44 chr11 28155733 28156146 -93687710 + RMER6B LTR ERVK 1 459 -2 1 799 3991 194 38 20 chr11 28156166 28156939 -93686917 + L1_Mur3 LINE L1 401 1192 -6536 1 799 1902 206 22 12 chr11 28156939 28157342 -93686514 - MTB_Mm LTR MaLR 0 407 1 1 799 3991 159 90 8 chr11 28157342 28157636 -93686220 + L1_Mur3 LINE L1 1193 1510 -4370 1 799 845 242 58 11 chr11 28157710 28158071 -93685785 + Lx9 LINE L1 7245 7639 -5 1 799 1522 311 53 13 chr11 28158434 28158981 -93684875 - Lx6 LINE L1 -78 7382 6814 1 799 1793 255 33 59 chr11 28159016 28159567 -93684289 - RLTR20B3 LTR ERVK 0 527 21 1 799 1113 50 0 0 chr11 28159683 28159823 -93684033 + (GGGAGA)n Simple_repeat Simple_repeat 3 142 0 1 799 1421 230 3 14 chr11 28159881 28160176 -93683680 + Lx5 LINE L1 6392 6683 -367 1 799 270 125 0 0 chr11 28160160 28160200 -93683656 - Lx5 LINE L1 -532 6518 6479 1 799 1082 270 97 3 chr11 28160248 28160597 -93683259 + Lx5 LINE L1 6664 7045 -5 1 799 1282 213 48 20 chr11 28160602 28160894 -93682962 + MTC LTR MaLR 66 365 -56 1 799 30 27 0 0 chr11 28160925 28160962 -93682894 + AT_rich Low_complexity Low_complexity 1 37 0 1 799 432 0 0 0 chr11 28160963 28161011 -93682845 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1 799 334 331 29 7 chr11 28161012 28161152 -93682704 - Lx5 LINE L1 -221 6829 6687 1 799 914 111 12 0 chr11 28161152 28161324 -93682532 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 1 799 21 0 0 0 chr11 28161326 28161347 -93682509 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 534 70 0 0 chr11 28161349 28161420 -93682436 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 799 17677 111 3 7 chr11 28161931 28165547 -93678309 - L1_Mus2 LINE L1 -2 6564 2963 1 799 1424 183 48 6 chr11 28165544 28165858 -93677998 - L1_Mus2 LINE L1 -5615 1001 675 1 799 277 236 11 43 chr11 28165898 28165991 -93677865 - L1Md_F LINE L1 -5776 743 654 1 799 6927 127 15 1 chr11 28166002 28167922 -93675934 - L1_Mus4 LINE L1 -7 6629 4685 1 799 1854 154 7 18 chr11 28167924 28168287 -93675569 + L1_Mus4 LINE L1 4307 4649 -1198 1 799 484 336 117 8 chr11 28168670 28168919 -93674937 + B4A SINE B4 2 277 -15 1 799 260 307 76 42 chr11 28169086 28169205 -93674651 + MER77 LTR ERVL 417 539 -68 1 799 1288 189 43 4 chr11 28169256 28169532 -93674324 + Lx2 LINE L1 6704 6990 -7 1 799 270 0 0 0 chr11 28170390 28170420 -93673436 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 799 310 347 0 21 chr11 28170426 28170523 -93673333 - B1_Mm SINE Alu -51 96 2 1 799 6993 174 8 7 chr11 28170899 28172153 -93671703 + ETnERV2-int LTR ERVK 4724 5978 -1428 1 799 1379 90 11 0 chr11 28172154 28172342 -93671514 + L1_Mus1 LINE L1 6378 6567 0 1 799 243 150 0 0 chr11 28172546 28172586 -93671270 + RLTR9A2 LTR ERVK 3 42 -341 1 799 1993 143 18 68 chr11 28172586 28172969 -93670887 + RLTR9A2 LTR ERVK 17 380 -3 1 799 322 57 0 36 chr11 28172983 28173038 -93670818 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 799 1100 101 0 0 chr11 28173171 28173319 -93670537 + B1_Mus1 SINE Alu 1 148 0 1 799 7019 147 45 12 chr11 28173555 28175379 -93668477 - Lx4A LINE L1 -143 6915 5002 1 799 22 56 0 0 chr11 28175485 28175521 -93668335 + AT_rich Low_complexity Low_complexity 1 36 0 1 799 586 291 104 86 chr11 28175558 28175990 -93667866 - RMER10A LTR ERVL -2 440 1 2 799 207 0 0 0 chr11 28176513 28176536 -93667320 + (A)n Simple_repeat Simple_repeat 1 23 0 2 799 225 0 0 0 chr11 28177189 28177214 -93666642 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 799 540 169 76 0 chr11 28177226 28177344 -93666512 - RMER10A LTR ERVL -2 440 314 2 799 729 181 153 6 chr11 28177347 28177530 -93666326 + RMER17B LTR ERVK 183 392 -566 2 799 2092 351 47 43 chr11 28178025 28178096 -93665760 - RodERV21-int LTR ERV1 -198 4793 4725 2 799 1663 136 154 30 chr11 28178096 28178460 -93665396 + RLTR9E LTR ERVK 1 409 0 2 799 2092 351 47 43 chr11 28178460 28180195 -93663661 - RodERV21-int LTR ERV1 -267 4724 2980 2 800 376 96 0 0 chr11 28180497 28180549 -93663307 - BGLII LTR ERVK 0 421 370 2 800 1079 190 16 45 chr11 28180549 28180792 -93663064 - RLTRETN_Mm LTR ERVK 0 322 87 2 800 3757 132 35 42 chr11 28180792 28182024 -93661832 - MMETn-int LTR ERVK -4297 3109 1730 2 800 6003 125 18 103 chr11 28182022 28183297 -93660559 - MMETn-int LTR ERVK -3675 1169 3 2 800 696 131 14 65 chr11 28183299 28183438 -93660418 - RLTRETN_Mm LTR ERVK 0 322 191 2 800 286 148 10 214 chr11 28183437 28183540 -93660316 - RLTRETN_Mm LTR ERVK -240 82 1 2 800 2692 85 3 3 chr11 28183540 28183915 -93659941 - BGLII LTR ERVK -46 375 1 2 800 369 0 0 0 chr11 28184066 28184107 -93659749 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 800 899 135 0 0 chr11 28184112 28184245 -93659611 - B1_Mm SINE Alu 0 147 15 2 800 430 297 87 102 chr11 28184245 28184313 -93659543 - B4A SINE B4 -60 227 30 2 800 261 0 0 0 chr11 28184740 28184769 -93659087 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 800 328 288 29 66 chr11 28185346 28185588 -93658268 - RodERV21-int LTR ERV1 -3116 3975 3743 2 800 3757 279 66 70 chr11 28185865 28186389 -93657467 - RodERV21-int LTR ERV1 -2274 2717 2175 2 800 190 186 113 48 chr11 28186389 28186451 -93657405 - L2b LINE L2 -205 3170 3105 2 800 3757 279 66 70 chr11 28186451 28187340 -93656516 - RodERV21-int LTR ERV1 -2274 2174 1250 2 800 478 336 15 22 chr11 28187651 28187705 -93656151 - RodERV21-int LTR ERV1 -3996 995 942 2 800 3257 43 5 2 chr11 28187705 28188100 -93655756 - MTA_Mm LTR MaLR 0 396 1 2 800 478 336 15 22 chr11 28188100 28188313 -93655543 - RodERV21-int LTR ERV1 -4050 941 731 2 800 1823 112 31 22 chr11 28188849 28189168 -93654688 - RLTRETN_Mm LTR ERVK 0 322 1 2 800 444 117 0 0 chr11 28189292 28189369 -93654487 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 800 1077 170 68 14 chr11 28189460 28189681 -93654175 + RMER17C LTR ERVK 170 402 -8 2 800 720 230 35 35 chr11 28189706 28189904 -93653952 - RMER10A LTR ERVL -120 322 125 2 800 1339 194 136 19 chr11 28189904 28190271 -93653585 + RMER17C LTR ERVK 1 410 0 2 800 210 143 0 0 chr11 28190403 28190438 -93653418 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 2 800 37061 35 0 0 chr11 28192608 28198022 -93645834 - L1Md_T LINE L1 0 6582 1170 2 800 3917 112 182 35 chr11 28198028 28198825 -93645031 - L1Md_T LINE L1 -5411 1205 292 2 800 1455 189 4 7 chr11 28199450 28199722 -93644134 - Lx4A LINE L1 0 7058 6788 2 800 952 157 35 0 chr11 28199722 28199894 -93643962 - Lx4A LINE L1 -369 6689 6512 2 800 5216 126 25 11 chr11 28199892 28200938 -93642918 - Lx4A LINE L1 -769 6289 5224 2 800 4021 177 144 15 chr11 28200938 28201742 -93642114 - RMER13B LTR ERVK 0 908 1 2 800 5216 132 16 11 chr11 28201742 28201980 -93641876 - Lx4A LINE L1 -654 5223 4982 2 800 1823 60 13 0 chr11 28201980 28202215 -93641641 - L1_Mus1 LINE L1 0 6567 6330 2 800 2374 60 0 9 chr11 28202215 28202535 -93641321 + L1_Mus1 LINE L1 6015 6331 -236 2 800 1177 108 5 0 chr11 28202536 28202722 -93641134 - Lx4A LINE L1 -885 4992 4806 2 800 303 79 47 16 chr11 28202798 28202862 -93640994 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 2 800 683 182 149 0 chr11 28203029 28203183 -93640673 - URR1A DNA MER1_type -49 177 1 2 800 213 187 0 39 chr11 28203339 28203417 -93640439 + CT-rich Low_complexity Low_complexity 2 76 0 2 800 201 289 11 43 chr11 28203428 28203522 -93640334 + CT-rich Low_complexity Low_complexity 2 92 0 2 800 224 189 0 36 chr11 28203456 28203511 -93640345 + T-rich Low_complexity Low_complexity 4 56 0 2 800 23 0 0 0 chr11 28203982 28204005 -93639851 + AT_rich Low_complexity Low_complexity 1 23 0 2 800 195 42 0 0 chr11 28204058 28204082 -93639774 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 800 28 99 0 0 chr11 28204104 28204195 -93639661 + AT_rich Low_complexity Low_complexity 1 91 0 2 800 486 46 0 0 chr11 28205249 28205314 -93638542 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 800 380 276 85 9 chr11 28205756 28205862 -93637994 - MIR SINE MIR -140 122 9 2 800 21 0 0 0 chr11 28206107 28206128 -93637728 + AT_rich Low_complexity Low_complexity 1 21 0 2 800 2882 183 86 26 chr11 28206586 28207233 -93636623 - L1_Mur3 LINE L1 -1385 4495 3788 2 800 549 220 239 0 chr11 28207233 28207392 -93636464 - B3 SINE B2 -15 201 5 2 800 2882 183 86 26 chr11 28207392 28207512 -93636344 - L1_Mur3 LINE L1 -2093 3787 3682 2 800 367 130 0 13 chr11 28207534 28207612 -93636244 - L1_Mur3 LINE L1 -2726 3154 3078 2 800 303 127 0 0 chr11 28207720 28207783 -93636073 + (A)n Simple_repeat Simple_repeat 1 63 0 2 800 3380 243 72 95 chr11 28207783 28208885 -93634971 - RLTR22_Mur LTR ERVK -167 1681 598 2 800 1144 95 0 0 chr11 28208885 28209032 -93634824 - B1_Mm SINE Alu 0 147 1 2 800 3380 243 72 95 chr11 28209032 28209407 -93634449 - RLTR22_Mur LTR ERVK -1251 597 239 2 800 1590 193 16 22 chr11 28209407 28209687 -93634169 - L1_Mur3 LINE L1 -1688 4189 3911 2 800 1755 121 24 63 chr11 28209687 28210022 -93633834 - RLTRETN_Mm LTR ERVK 0 322 1 2 800 1590 193 16 22 chr11 28210022 28210111 -93633745 - L1_Mur3 LINE L1 -1967 3910 3822 2 800 3824 203 38 8 chr11 28210109 28210286 -93633570 - L1_Mur3 LINE L1 -3641 2236 2053 2 800 546 67 0 0 chr11 28210286 28210361 -93633495 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 800 3824 216 36 13 chr11 28210361 28211464 -93632392 - L1_Mur3 LINE L1 -3825 2052 926 2 800 207 0 0 0 chr11 28211464 28211487 -93632369 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 2 800 1236 255 29 27 chr11 28211487 28211524 -93632332 - L1_Mur3 LINE L1 -6803 925 895 2 800 522 0 0 0 chr11 28212512 28212570 -93631286 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 800 7558 58 5 2 chr11 28214108 28215664 -93628192 - L1Md_F2 LINE L1 0 6582 5024 2 800 202 269 19 0 chr11 28216050 28216102 -93627754 - L2a LINE L2 -102 3324 3272 2 800 203 370 89 33 chr11 28217130 28217401 -93626455 - L2a LINE L2 -499 2920 2635 2 800 1406 166 79 0 chr11 28217835 28218100 -93625756 + RMER4B LTR ERVK 17 302 -283 2 800 1060 245 91 4 chr11 28218093 28218347 -93625509 - ORR1C1 LTR MaLR -102 276 1 2 800 341 93 19 0 chr11 28219156 28219210 -93624646 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 2 800 1989 83 0 7 chr11 28219214 28219492 -93624364 - L1_Mus2 LINE L1 0 6566 6291 2 800 30 59 0 0 chr11 28220198 28220249 -93623607 + AT_rich Low_complexity Low_complexity 1 51 0 2 800 402 290 161 62 chr11 28220311 28220664 -93623192 + L1MC4a LINE L1 5256 5643 -2239 2 800 333 310 76 17 chr11 28220833 28220951 -93622905 + RSINE1 SINE B4 20 144 -21 2 800 429 109 0 0 chr11 28220955 28221019 -93622837 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 800 456 19 0 0 chr11 28221036 28221089 -93622767 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 800 342 0 0 0 chr11 28221089 28221126 -93622730 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 800 355 264 37 19 chr11 28221347 28221509 -93622347 + L1MC4a LINE L1 6094 6258 -1624 2 800 4492 206 89 10 chr11 28221559 28223628 -93620228 + Lx6 LINE L1 280 2515 -3365 2 800 1237 194 36 0 chr11 28223628 28223850 -93620006 + ORR1B1 LTR MaLR 1 230 -164 2 800 2454 197 58 41 chr11 28223769 28224308 -93619548 - RLTR26 LTR ERVK -94 548 1 2 800 5734 95 14 0 chr11 28224311 28225108 -93618748 - MERVK26-int LTR ERVK -1 6918 6111 2 800 11643 117 21 27 chr11 28225108 28226979 -93616877 - L1_Mur1 LINE L1 -2601 3285 1428 2 800 528 16 0 0 chr11 28226979 28227040 -93616816 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 2 800 11643 175 40 28 chr11 28227040 28228338 -93615518 - L1_Mur1 LINE L1 -4459 1427 14 2 800 926 196 40 18 chr11 28228363 28228591 -93615265 + L1_Mur3 LINE L1 3965 4197 -1683 2 800 5848 191 82 44 chr11 28228618 28228811 -93615045 + Lx6 LINE L1 2551 2744 -3136 2 800 251 28 28 0 chr11 28228811 28228847 -93615009 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 800 5848 191 82 44 chr11 28228847 28230324 -93613532 + Lx6 LINE L1 2745 4285 -1595 2 800 5268 209 25 33 chr11 28230323 28231325 -93612531 + Lx6 LINE L1 5196 6193 -1267 2 800 276 30 0 0 chr11 28231325 28231358 -93612498 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 800 5268 271 59 23 chr11 28231358 28231871 -93611985 + Lx6 LINE L1 6194 6734 -726 2 800 1287 84 0 0 chr11 28231871 28232049 -93611807 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 2 800 5268 259 70 59 chr11 28232049 28232733 -93611123 + Lx6 LINE L1 6735 7680 -16 2 800 506 283 97 32 chr11 28232946 28233132 -93610724 - B3A SINE B2 0 198 1 2 800 1137 266 42 19 chr11 28233132 28233442 -93610414 + MTEa LTR MaLR 1 317 -62 2 800 378 358 90 26 chr11 28233484 28233751 -93610105 + L1MC4a LINE L1 6322 6605 -1277 2 800 597 28 0 0 chr11 28234017 28234088 -93609768 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 800 1599 233 10 62 chr11 28234110 28234526 -93609330 + ORR1B1 LTR MaLR 1 394 0 2 800 2130 88 7 0 chr11 28234575 28234860 -93608996 - L1_Mus1 LINE L1 0 6567 6281 2 800 188 154 0 19 chr11 28234911 28234964 -93608892 + T-rich Low_complexity Low_complexity 4 55 0 2 800 1020 220 5 9 chr11 28234970 28235190 -93608666 + ORR1B1-int LTR MaLR 50 268 -1695 2 800 1542 173 39 7 chr11 28235164 28235444 -93608412 + ORR1B1 LTR MaLR 106 394 0 2 800 371 364 70 35 chr11 28235667 28235980 -93607876 + L1MC4a LINE L1 6671 6994 -888 2 800 258 32 0 0 chr11 28236394 28236425 -93607431 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2 800 342 278 113 0 chr11 28236433 28236530 -93607326 - L2c LINE L2 -2 3385 3278 2 800 1109 74 0 7 chr11 28236597 28236746 -93607110 - B1_Mus1 SINE Alu 0 148 1 2 800 776 137 64 14 chr11 28237742 28237883 -93605973 - B1_Mur3 SINE Alu 0 149 2 2 800 183 341 61 0 chr11 28238440 28238522 -93605334 + MIRb SINE MIR 17 103 -165 2 800 296 254 138 41 chr11 28240193 28240316 -93603540 - MLT1A LTR MaLR -50 324 190 2 800 319 295 77 44 chr11 28241135 28241316 -93602540 - MLT1A LTR MaLR -15 359 173 2 800 233 227 123 15 chr11 28241548 28241678 -93602178 + L1MC5 LINE L1 7321 7464 -497 2 800 305 269 41 14 chr11 28241753 28241900 -93601956 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 2 800 681 231 80 11 chr11 28242094 28242269 -93601587 - Lx9 LINE L1 -345 7299 7113 2 800 225 88 0 0 chr11 28242874 28242908 -93600948 + Lx9 LINE L1 7602 7635 -9 2 800 480 171 8 25 chr11 28244504 28244562 -93599294 + polypyrimidine Low_complexity Low_complexity 66 121 0 2 800 1276 67 0 11 chr11 28244562 28244744 -93599112 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 800 480 171 8 25 chr11 28244744 28244805 -93599051 + polypyrimidine Low_complexity Low_complexity 5 65 0 2 800 608 109 0 0 chr11 28246106 28246198 -93597658 + L1_Mus3 LINE L1 5762 5853 -785 2 800 44 46 0 0 chr11 28247340 28247405 -93596451 + AT_rich Low_complexity Low_complexity 1 65 0 2 800 36265 30 0 1 chr11 28247405 28253805 -93590051 - L1Md_T LINE L1 0 6585 92 2 800 12599 166 50 53 chr11 28253806 28256805 -93587051 - L1Md_F2 LINE L1 -31 6551 3706 2 800 1101 90 7 0 chr11 28256805 28256950 -93586906 + B1_Mus1 SINE Alu 2 147 -1 2 800 12599 197 58 69 chr11 28256950 28259439 -93584417 - L1Md_F2 LINE L1 -2178 3705 1108 2 800 192 137 59 0 chr11 28259506 28259557 -93584299 + GA-rich Low_complexity Low_complexity 2 55 0 2 800 324 318 68 30 chr11 28259733 28259866 -93583990 - RMER4B LTR ERVK -101 484 347 2 800 293 180 21 73 chr11 28259926 28260022 -93583834 - RodERV21-int LTR ERV1 -202 4789 4699 2 800 571 308 0 10 chr11 28260572 28260772 -93583084 - RodERV21-int LTR ERV1 -1883 3108 2911 2 800 285 296 0 0 chr11 28261331 28261429 -93582427 - MER52-int LTR ERV1 -1319 5772 5675 2 800 361 315 17 17 chr11 28261907 28262143 -93581713 - MER52-int LTR ERV1 -1988 5103 4868 2 800 483 66 43 11 chr11 28262516 28262608 -93581248 + (TTTTG)n Simple_repeat Simple_repeat 2 96 0 2 800 4644 301 37 35 chr11 28263089 28265021 -93578835 - RodERV21-int LTR ERV1 -2273 2718 784 2 800 495 0 0 0 chr11 28265947 28266002 -93577854 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 3 800 187 173 39 0 chr11 28266102 28266154 -93577702 + GA-rich Low_complexity Low_complexity 2 55 0 3 800 4605 118 8 13 chr11 28266155 28266869 -93576987 - L1VL2 LINE L1 -5509 826 116 3 800 1044 221 143 19 chr11 28266902 28267161 -93576695 + ORR1D1 LTR MaLR 76 366 -8 3 800 279 93 0 0 chr11 28267250 28267293 -93576563 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 800 230 98 0 47 chr11 28268476 28268519 -93575337 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 3 800 476 184 35 21 chr11 28268531 28268675 -93575181 + Lx9 LINE L1 7492 7637 -7 3 800 1495 277 54 57 chr11 28268845 28269323 -93574533 - RMER19C LTR ERVK -5 606 130 3 800 565 93 0 30 chr11 28269438 28269538 -93574318 + (TTTCC)n Simple_repeat Simple_repeat 4 100 0 3 800 526 118 41 14 chr11 28269538 28269663 -93574193 - RMER3D-int LTR ERVK -2248 594 489 3 800 638 191 0 47 chr11 28269797 28269989 -93573867 - RMER3D-int LTR ERVK -1991 851 669 3 800 441 226 23 52 chr11 28269990 28270163 -93573693 - RMER3D-int LTR ERVK -2023 819 652 3 800 492 138 21 0 chr11 28270173 28270266 -93573590 - RMER3D-int LTR ERVK -2269 573 489 3 800 3095 74 2 28 chr11 28270687 28271119 -93572737 - BGLII LTR ERVK 0 421 1 3 800 1116 203 58 50 chr11 28271119 28271378 -93572478 - RMER19B LTR ERVK -551 351 91 3 800 670 44 0 0 chr11 28271387 28271478 -93572378 + RLTRETN_Mm LTR ERVK 1 91 -231 3 800 8033 119 9 27 chr11 28271534 28272917 -93570939 + MMETn-int LTR ERVK 3486 4844 0 3 800 1729 144 9 59 chr11 28272917 28273256 -93570600 + RLTRETN_Mm LTR ERVK 1 322 0 3 800 227 88 0 0 chr11 28273259 28273293 -93570563 - RMER19B LTR ERVK -868 34 1 3 800 790 282 85 29 chr11 28273507 28273989 -93569867 + L1MC LINE L1 2118 2626 -3520 3 800 464 254 73 69 chr11 28274086 28274331 -93569525 + L1MC LINE L1 2872 3117 -3029 3 800 358 282 16 24 chr11 28274333 28274460 -93569396 + (TATATG)n Simple_repeat Simple_repeat 4 129 0 3 800 286 261 6 6 chr11 28274465 28274631 -93569225 + (TG)n Simple_repeat Simple_repeat 1 166 0 3 800 226 320 13 0 chr11 28274643 28274718 -93569138 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 800 773 330 76 29 chr11 28274720 28274995 -93568861 - B4A SINE B4 -4 288 1 3 800 916 280 81 39 chr11 28275004 28275672 -93568184 + L1MC LINE L1 3206 3903 -2243 3 800 2236 162 126 33 chr11 28275672 28276188 -93567668 + RMER2 LTR ERV1 1 564 -3 3 800 916 280 81 39 chr11 28276188 28276256 -93567600 + L1MC LINE L1 3904 3973 -2173 3 800 335 257 118 12 chr11 28276268 28276437 -93567419 + L1M2 LINE L1 4127 4313 -1830 3 800 604 259 34 54 chr11 28276524 28276822 -93567034 + L1M2 LINE L1 4340 4631 -1512 3 800 358 358 84 64 chr11 28277259 28277342 -93566514 + B4A SINE B4 15 90 -202 3 800 803 68 26 0 chr11 28277342 28277459 -93566397 + (GAAAA)n Simple_repeat Simple_repeat 2 121 0 3 800 358 358 84 64 chr11 28277459 28277626 -93566230 + B4A SINE B4 91 270 -22 3 800 413 245 78 94 chr11 28277709 28277889 -93565967 + B3A SINE B2 3 177 -39 3 800 224 333 128 47 chr11 28278465 28278613 -93565243 - L4 LINE RTE -1497 532 373 3 800 813 194 72 28 chr11 28278763 28278943 -93564913 - Lx7 LINE L1 -437 7259 7072 3 800 616 177 9 9 chr11 28278941 28279055 -93564801 - Lx7 LINE L1 -915 6781 6668 3 800 3143 301 121 19 chr11 28279061 28280248 -93563608 - MTEa-int LTR MaLR -243 1337 31 3 800 400 264 0 0 chr11 28280277 28280364 -93563492 - MTEa LTR MaLR 0 379 293 3 800 506 251 84 48 chr11 28280589 28281070 -93562786 - L1M2 LINE L1 -701 5596 5090 3 800 367 354 153 23 chr11 28281073 28281466 -93562390 - L1M2 LINE L1 -3590 3255 2812 3 800 671 319 37 21 chr11 28281576 28281951 -93561905 - L1M2 LINE L1 -4172 2677 2297 3 800 4693 45 20 12 chr11 28282557 28283157 -93560699 + L1Md_F3 LINE L1 5978 6582 -2 3 800 6956 111 8 1 chr11 28283354 28284774 -93559082 - L1_Mus3 LINE L1 -3 6635 5202 3 800 526 236 27 9 chr11 28285022 28285133 -93558723 - PB1D9 SINE Alu -5 115 3 3 800 189 0 0 0 chr11 28285463 28285484 -93558372 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 800 22 0 0 0 chr11 28287606 28287628 -93556228 + AT_rich Low_complexity Low_complexity 1 22 0 3 800 186 392 9 27 chr11 28289257 28289367 -93554489 - MER5B DNA MER1_type -70 108 1 3 800 190 250 45 0 chr11 28291312 28291356 -93552500 + MIR SINE MIR 87 132 -76 3 800 226 140 20 0 chr11 28291521 28291538 -93552318 + T-rich Low_complexity Low_complexity 37 53 0 3 800 900 111 14 20 chr11 28291538 28291685 -93552171 - B1_Mus1 SINE Alu -2 146 1 3 800 226 140 20 0 chr11 28291685 28291717 -93552139 + T-rich Low_complexity Low_complexity 4 36 0 3 800 195 42 0 0 chr11 28296612 28296636 -93547220 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 800 504 156 0 0 chr11 28298363 28298453 -93545403 + CT-rich Low_complexity Low_complexity 1 90 0 3 800 218 214 18 0 chr11 28298483 28298539 -93545317 + CT-rich Low_complexity Low_complexity 1 57 0 3 800 536 0 16 0 chr11 28298545 28298609 -93545247 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 3 800 809 184 148 0 chr11 28300439 28300662 -93543194 + Lx9 LINE L1 7381 7636 -8 3 800 3225 282 87 21 chr11 28303379 28304474 -93539382 + Lx8 LINE L1 6287 7453 -20 3 800 326 295 0 61 chr11 28304631 28304752 -93539104 + MIRb SINE MIR 56 163 -45 3 800 265 283 222 34 chr11 28305230 28305347 -93538509 + ORR1D2 LTR MaLR 132 270 -100 3 800 900 28 0 0 chr11 28305347 28305454 -93538402 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 800 276 256 7 0 chr11 28306286 28306365 -93537491 + L1MA8 LINE L1 5242 5327 -985 3 800 382 274 9 62 chr11 28306382 28306495 -93537361 - PB1D7 SINE Alu -2 118 12 3 800 420 265 107 44 chr11 28306510 28306782 -93537074 + L1MA8 LINE L1 5340 5628 -672 3 800 835 156 17 0 chr11 28306805 28306978 -93536878 + GA-rich Low_complexity Low_complexity 3 178 0 3 800 715 269 112 45 chr11 28306998 28307527 -93536329 + L1MA8 LINE L1 5676 6239 -52 3 800 378 290 56 37 chr11 28307601 28307762 -93536094 - RSINE1 SINE B4 0 165 2 3 800 9425 102 6 1 chr11 28308447 28310589 -93533267 - L1_Mus1 LINE L1 -1 6566 4412 3 800 6547 85 6 15 chr11 28310592 28311534 -93532322 + L1_Mm LINE L1 3277 4210 -1673 3 801 413 304 28 56 chr11 28311693 28311836 -93532020 + B3 SINE B2 53 191 -25 3 801 227 333 11 44 chr11 28312398 28312489 -93531367 + L2a LINE L2 3296 3383 -43 3 801 584 185 9 27 chr11 28312539 28312650 -93531206 + B1_Mur3 SINE Alu 41 149 0 3 801 237 33 0 0 chr11 28312734 28312764 -93531092 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 801 220 83 42 0 chr11 28317486 28317534 -93526322 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 3 801 3327 128 25 15 chr11 28318001 28318531 -93525325 - Lx3A LINE L1 -3 6978 6444 3 801 2057 93 13 0 chr11 28318531 28318833 -93525023 + L1_Mur1 LINE L1 4924 5229 -657 3 801 4061 104 0 15 chr11 28318993 28319579 -93524277 - L1_Mus1 LINE L1 0 6567 5991 3 801 195 282 0 0 chr11 28319670 28319741 -93524115 + (TATG)n Simple_repeat Simple_repeat 4 74 0 3 801 640 339 0 22 chr11 28319749 28319930 -93523926 - B3A SINE B2 -20 178 2 3 801 831 67 7 29 chr11 28320048 28320186 -93523670 - L1Md_F2 LINE L1 0 6582 6448 3 801 28 0 0 0 chr11 28320634 28320662 -93523194 + AT_rich Low_complexity Low_complexity 1 28 0 3 801 456 99 0 0 chr11 28321312 28321383 -93522473 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 801 229 300 0 0 chr11 28322282 28322352 -93521504 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 801 263 314 62 35 chr11 28323863 28324008 -93519848 + MIR3 SINE MIR 55 203 -5 3 801 1153 82 0 0 chr11 28324493 28324639 -93519217 - B1_Mm SINE Alu 0 147 2 3 801 596 226 165 21 chr11 28325004 28325198 -93518658 - RMER21A LTR ERV1 -258 689 468 3 801 335 231 76 13 chr11 28325328 28325407 -93518449 - RodERV21-int LTR ERV1 -8 4983 4900 3 801 2645 276 58 46 chr11 28325432 28326330 -93517526 - RodERV21-int LTR ERV1 -164 4827 3922 3 801 306 0 0 0 chr11 28326330 28326364 -93517492 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 801 2645 276 58 46 chr11 28326364 28326512 -93517344 - RodERV21-int LTR ERV1 -1070 3921 3768 3 801 397 271 19 0 chr11 28326527 28326634 -93517222 - RodERV21-int LTR ERV1 -1528 3463 3355 3 801 307 221 22 55 chr11 28327040 28327131 -93516725 - RLTR19-int LTR ERVK -4946 1191 1104 3 801 7679 219 42 31 chr11 28327485 28329173 -93514683 - RodERV21-int LTR ERV1 -2274 2717 1012 3 801 846 259 46 84 chr11 28329423 28329772 -93514084 - RLTR42-int LTR ERVK -4187 1335 1104 3 801 2529 232 191 37 chr11 28330026 28330888 -93512968 - RodERV21-int LTR ERV1 -3995 996 2 3 801 730 229 108 15 chr11 28330928 28331132 -93512724 - RMER21B LTR ERV1 -273 569 347 3 801 318 319 88 20 chr11 28332510 28332657 -93511199 - RSINE1 SINE B4 -7 158 2 3 801 573 198 23 82 chr11 28333020 28333191 -93510665 + Lx4A LINE L1 6891 7051 -7 3 801 918 52 0 0 chr11 28333191 28333307 -93510549 + (GGAGA)n Simple_repeat Simple_repeat 3 118 0 3 801 3280 75 14 39 chr11 28335342 28335890 -93507966 - L1_Mus1 LINE L1 -6 6632 6103 3 801 3544 67 2 0 chr11 28335890 28336352 -93507504 + L1_Mus2 LINE L1 5644 6453 -547 3 801 238 281 0 0 chr11 28336938 28337002 -93506854 - Lx7 LINE L1 -17 7679 7616 3 801 495 0 0 0 chr11 28337012 28337067 -93506789 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 801 962 17 9 0 chr11 28337698 28337814 -93506042 + (GA)n Simple_repeat Simple_repeat 2 118 0 3 801 2512 157 27 23 chr11 28337911 28338386 -93505470 + RMER17B LTR ERVK 1 477 -481 3 801 234 294 0 86 chr11 28338612 28338705 -93505151 + MLT1A1 LTR MaLR 72 156 -252 3 801 192 413 28 0 chr11 28339862 28339971 -93503885 - L2a LINE L2 -32 3394 3283 3 801 272 337 153 43 chr11 28340307 28340748 -93503108 + L2a LINE L2 2730 3207 -219 3 801 340 321 156 7 chr11 28341038 28341179 -93502677 + MLT1A0 LTR MaLR 1 162 -203 3 801 21 36 0 0 chr11 28341916 28341944 -93501912 + AT_rich Low_complexity Low_complexity 1 28 0 3 801 30396 122 11 12 chr11 28342478 28348877 -93494979 + L1_Mus2 LINE L1 342 6565 -1 3 801 674 143 0 8 chr11 28350506 28350626 -93493230 + G-rich Low_complexity Low_complexity 5 123 0 3 801 1252 234 41 31 chr11 28351006 28351297 -93492559 + Lx9 LINE L1 6486 6779 -865 3 801 1643 181 18 3 chr11 28351441 28351773 -93492083 - MusHAL1 LINE L1 -299 2413 2077 3 801 364 224 108 60 chr11 28351779 28351964 -93491892 + Lx4B LINE L1 6865 7058 0 3 801 7757 111 9 5 chr11 28352045 28353900 -93489956 - L1_Mus3 LINE L1 -2 6636 4772 3 801 4521 130 7 12 chr11 28353899 28354631 -93489225 + L1_Mus3 LINE L1 4053 4780 -1103 3 801 375 182 0 0 chr11 28354781 28354858 -93488998 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 3 801 698 266 69 60 chr11 28355867 28356099 -93487757 + B4A SINE B4 1 234 -58 3 801 777 163 0 0 chr11 28356150 28356328 -93487528 + GA-rich Low_complexity Low_complexity 1 178 0 3 801 21 57 0 0 chr11 28357165 28357200 -93486656 + AT_rich Low_complexity Low_complexity 1 35 0 4 801 339 178 11 43 chr11 28358205 28358299 -93485557 + Lx9 LINE L1 7554 7644 0 4 801 346 368 96 0 chr11 28358906 28359115 -93484741 + MIR SINE MIR 9 237 -25 4 801 1087 0 0 0 chr11 28359592 28359725 -93484131 - L1Md_T LINE L1 0 6582 6450 4 801 709 234 132 5 chr11 28359885 28360074 -93483782 - B3 SINE B2 -1 215 3 4 801 25 31 0 0 chr11 28360762 28360794 -93483062 + AT_rich Low_complexity Low_complexity 1 32 0 4 801 3551 35 3 0 chr11 28362132 28362603 -93481253 - L1Md_F2 LINE L1 -664 5918 5447 4 801 8465 30 1 55 chr11 28362611 28364188 -93479668 - L1Md_T LINE L1 -5 6577 5086 4 801 5507 37 3 0 chr11 28364188 28364842 -93479014 + L1Md_F2 LINE L1 5925 6580 -2 4 801 592 281 95 6 chr11 28365071 28365250 -93478606 + B3A SINE B2 2 196 -2 4 801 444 19 0 0 chr11 28367184 28367237 -93476619 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 801 26 30 0 0 chr11 28368053 28368086 -93475770 + AT_rich Low_complexity Low_complexity 1 33 0 4 801 468 0 0 0 chr11 28368566 28368618 -93475238 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 801 438 75 0 0 chr11 28368619 28368686 -93475170 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 801 804 21 0 0 chr11 28372261 28372355 -93471501 + (GAA)n Simple_repeat Simple_repeat 3 96 0 4 801 265 335 55 28 chr11 28372485 28372609 -93471247 + MIRb SINE MIR 20 148 -120 4 801 905 250 81 36 chr11 28373092 28373459 -93470397 + Lx2B LINE L1 6587 6991 -9 4 801 5654 8 0 0 chr11 28373847 28374479 -93469377 - L1Md_A LINE L1 0 6582 5951 4 801 20462 3 0 0 chr11 28374479 28376841 -93467015 + L1Md_A LINE L1 3590 5951 -631 4 801 339 335 141 18 chr11 28377835 28378005 -93465851 + MIR SINE MIR 53 243 -19 4 801 425 384 7 20 chr11 28378606 28378755 -93465101 + RSINE1 SINE B4 1 147 -18 4 801 3510 81 2 17 chr11 28380389 28380867 -93462989 - L1_Mus2 LINE L1 -2 6564 6094 4 801 4425 62 11 0 chr11 28380872 28381712 -93462144 + L1_Mus2 LINE L1 5307 6155 -411 4 801 525 88 0 0 chr11 28381824 28381904 -93461952 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 801 451 309 71 19 chr11 28383323 28383478 -93460378 - B3 SINE B2 -53 163 1 4 801 1154 52 0 0 chr11 28385072 28385225 -93458631 - L1Md_A LINE L1 0 6582 6430 4 801 1456 86 18 5 chr11 28385864 28386085 -93457771 + L1_Mus3 LINE L1 6409 6632 -6 4 801 622 248 35 0 chr11 28386478 28386619 -93457237 - RSINE1 SINE B4 -19 146 1 4 801 245 271 29 0 chr11 28386719 28386789 -93457067 + GA-rich Low_complexity Low_complexity 1 72 0 4 801 495 33 0 0 chr11 28387871 28387932 -93455924 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 801 207 0 0 0 chr11 28387932 28387954 -93455902 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 801 261 0 0 0 chr11 28388795 28388824 -93455032 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 801 588 315 32 21 chr11 28389109 28389297 -93454559 + RMER30 DNA MER1_type 12 201 -1 4 801 210 296 94 104 chr11 28390189 28390381 -93453475 + L2b LINE L2 3186 3375 0 4 801 252 298 0 105 chr11 28390587 28390692 -93453164 - MER103 DNA DNA 0 166 73 4 801 327 113 0 0 chr11 28390823 28390876 -93452980 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 801 635 287 134 38 chr11 28394531 28395158 -93448698 + L1MEf LINE L1 859 1545 -4870 4 801 243 0 0 0 chr11 28395742 28395769 -93448087 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 801 600 186 0 0 chr11 28395769 28395887 -93447969 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 801 368 341 70 17 chr11 28395918 28396127 -93447729 + L1MEf LINE L1 1815 2035 -4365 4 801 253 333 42 0 chr11 28396138 28396210 -93447646 + PB1D10 SINE Alu 1 75 -42 4 801 1476 190 161 3 chr11 28397665 28397794 -93446062 + ORR1B2 LTR MaLR 1 151 -216 4 801 618 14 0 0 chr11 28397794 28397865 -93445991 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 801 1476 190 161 3 chr11 28397865 28398052 -93445804 + ORR1B2 LTR MaLR 152 367 0 4 801 1799 129 23 0 chr11 28398817 28399120 -93444736 - MusHAL1 LINE L1 -358 2354 2045 4 801 6582 137 41 62 chr11 28399118 28400990 -93442866 + Lx LINE L1 4848 6643 -11 4 801 693 168 0 56 chr11 28401414 28401540 -93442316 + B2_Mm2 SINE B2 14 132 -63 4 801 549 0 0 0 chr11 28401846 28401907 -93441949 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 801 243 319 235 22 chr11 28402028 28402394 -93441462 - HAL1 LINE L1 -548 1959 1516 4 801 372 22 0 0 chr11 28402698 28402743 -93441113 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 801 199 140 40 0 chr11 28402745 28402795 -93441061 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 801 435 202 23 105 chr11 28402914 28403047 -93440809 + RLTR26 LTR ERVK 295 416 -226 4 801 1550 38 11 0 chr11 28403750 28403936 -93439920 - B2_Mm1t SINE B2 -5 188 1 4 801 264 385 79 29 chr11 28404469 28404710 -93439146 + Arthur1 DNA Tip100 2 254 -3693 4 801 22 56 0 0 chr11 28405649 28405685 -93438171 + AT_rich Low_complexity Low_complexity 1 36 0 4 801 1144 75 0 7 chr11 28405700 28405848 -93438008 + B1_Mm SINE Alu 1 147 0 4 801 23 0 0 0 chr11 28407056 28407079 -93436777 + AT_rich Low_complexity Low_complexity 1 23 0 4 801 5307 48 0 3 chr11 28407955 28408606 -93435250 + L1Md_F2 LINE L1 5927 6575 -7 4 801 570 326 175 26 chr11 28408692 28409081 -93434775 - L2 LINE L2 -353 3066 2606 4 801 441 0 0 0 chr11 28409081 28409130 -93434726 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 801 570 326 175 26 chr11 28409130 28409209 -93434647 - L2 LINE L2 -814 2605 2529 4 801 2285 201 34 43 chr11 28409284 28409814 -93434042 + RLTR11A2 LTR ERVK 3 527 0 4 801 23 0 0 0 chr11 28410065 28410088 -93433768 + AT_rich Low_complexity Low_complexity 1 23 0 4 801 926 155 6 0 chr11 28411099 28411267 -93432589 + GA-rich Low_complexity Low_complexity 2 170 0 4 801 581 40 13 0 chr11 28411291 28411367 -93432489 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 4 801 491 112 0 12 chr11 28412058 28412139 -93431717 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 4 801 1438 11 17 0 chr11 28412139 28412314 -93431542 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 801 364 339 9 35 chr11 28412576 28412692 -93431164 + RSINE1 SINE B4 43 155 -10 4 801 21 0 0 0 chr11 28412721 28412742 -93431114 + AT_rich Low_complexity Low_complexity 1 21 0 4 801 258 136 0 0 chr11 28412959 28413003 -93430853 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 4 801 21 0 0 0 chr11 28414930 28414951 -93428905 + AT_rich Low_complexity Low_complexity 1 21 0 4 801 527 109 167 10 chr11 28415481 28415583 -93428273 - BC1_Mm scRNA scRNA -34 118 1 4 801 440 214 8 0 chr11 28415919 28416036 -93427820 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 801 868 230 125 0 chr11 28417965 28418165 -93425691 + URR1A DNA MER1_type 2 226 0 4 801 455 45 15 0 chr11 28418310 28418376 -93425480 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 801 24 53 0 0 chr11 28418554 28418592 -93425264 + AT_rich Low_complexity Low_complexity 1 38 0 4 801 26 30 0 0 chr11 28419186 28419219 -93424637 + AT_rich Low_complexity Low_complexity 1 33 0 4 801 574 273 10 77 chr11 28419878 28420176 -93423680 - L1M2 LINE L1 -1464 4679 4402 4 801 699 331 32 32 chr11 28420229 28420479 -93423377 - B4 SINE B4 -42 250 1 4 801 3793 49 0 2 chr11 28420963 28421434 -93422422 + L1Md_F2 LINE L1 6113 6582 0 4 801 229 390 61 17 chr11 28422385 28422565 -93421291 + LTR33 LTR ERVL 76 263 -252 4 801 562 305 96 10 chr11 28422847 28423046 -93420810 + B3A SINE B2 1 216 0 4 801 967 220 335 22 chr11 28423218 28423539 -93420317 - MTC LTR MaLR 0 421 1 4 801 306 294 49 0 chr11 28425210 28425312 -93418544 + L1MB7 LINE L1 4398 4504 -1642 4 801 327 49 0 0 chr11 28425352 28425393 -93418463 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 801 423 210 23 105 chr11 28425517 28425650 -93418206 + RLTR26 LTR ERVK 295 416 -226 4 801 234 233 10 100 chr11 28425921 28426021 -93417835 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 4 801 970 294 115 30 chr11 28426023 28426342 -93417514 + L1MB7 LINE L1 4591 4933 -1213 4 801 450 0 0 0 chr11 28426342 28426392 -93417464 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 801 395 68 17 0 chr11 28426392 28426450 -93417406 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 801 970 294 115 30 chr11 28426450 28426764 -93417092 + L1MB7 LINE L1 4934 5278 -868 4 801 1368 98 19 0 chr11 28426810 28427015 -93416841 + L1_Mus3 LINE L1 6427 6635 -3 4 801 236 257 40 13 chr11 28427040 28427115 -93416741 - MLT1A LTR MaLR -11 397 321 4 801 8201 74 31 1 chr11 28427115 28428855 -93415001 + L1Md_F2 LINE L1 4720 6510 -72 4 801 271 244 79 2 chr11 28428893 28428971 -93414885 - MLT1A LTR MaLR -58 350 267 4 801 549 44 0 0 chr11 28429249 28429317 -93414539 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 801 465 19 0 0 chr11 28429317 28429370 -93414486 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 801 336 301 87 27 chr11 28429370 28429520 -93414336 + L1MB7 LINE L1 5437 5595 -589 4 801 288 237 109 44 chr11 28429590 28429659 -93414197 + L1MB7 LINE L1 5719 5785 -389 4 801 387 83 0 0 chr11 28429659 28429719 -93414137 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 801 288 237 109 44 chr11 28429719 28429786 -93414070 + L1MB7 LINE L1 5786 5864 -310 4 801 8279 4 0 0 chr11 28429786 28430706 -93413150 + L1Md_A LINE L1 5663 6582 0 4 801 276 91 0 0 chr11 28430709 28430753 -93413103 + (A)n Simple_repeat Simple_repeat 1 44 0 4 801 505 323 30 17 chr11 28430753 28430989 -93412867 + L1MB7 LINE L1 5861 6099 -85 4 801 1581 168 109 15 chr11 28433577 28433945 -93409911 + RLTR41 LTR ERV1 8 446 0 4 801 292 207 58 29 chr11 28435339 28435513 -93408343 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 801 300 154 0 0 chr11 28436249 28436301 -93407555 + A-rich Low_complexity Low_complexity 3 54 0 4 801 1554 229 74 54 chr11 28436422 28436483 -93407373 - MTD LTR MaLR -4 415 364 4 801 3291 35 5 2 chr11 28436483 28436878 -93406978 - MTA_Mm LTR MaLR 0 396 1 4 801 1554 229 74 54 chr11 28436878 28437223 -93406633 - MTD LTR MaLR -56 363 1 4 801 1001 141 0 6 chr11 28437244 28437423 -93406433 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 4 801 717 306 85 50 chr11 28437445 28437786 -93406070 - Lx8 LINE L1 -153 7320 6968 4 801 2052 150 40 143 chr11 28438086 28438583 -93405273 + RLTR41 LTR ERV1 1 446 0 4 801 301 275 90 86 chr11 28438778 28439033 -93404823 + L1MB8 LINE L1 5858 6113 -65 5 801 249 294 102 34 chr11 28439049 28439137 -93404719 - ID_B1 SINE B4 -50 174 81 5 801 563 327 72 15 chr11 28440010 28440274 -93403582 - MARNA DNA Mariner -294 292 14 5 801 216 0 0 0 chr11 28440445 28440469 -93403387 + (T)n Simple_repeat Simple_repeat 1 24 0 5 801 22 0 0 0 chr11 28440753 28440775 -93403081 + AT_rich Low_complexity Low_complexity 1 22 0 5 801 326 211 200 0 chr11 28440832 28440927 -93402929 + PB1D9 SINE Alu 7 120 0 5 801 1000 259 136 46 chr11 28441382 28441720 -93402136 - MTD LTR MaLR -36 383 5 5 802 23 0 0 0 chr11 28442725 28442748 -93401108 + AT_rich Low_complexity Low_complexity 1 23 0 5 802 834 234 24 19 chr11 28442824 28443037 -93400819 + B3 SINE B2 1 214 -2 5 802 680 281 118 78 chr11 28443954 28444074 -93399782 + L1MC LINE L1 3874 4010 -2136 5 802 838 303 35 18 chr11 28444074 28444356 -93399500 + B4 SINE B4 4 290 -2 5 802 276 30 0 0 chr11 28444363 28444396 -93399460 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 802 680 281 118 78 chr11 28444396 28444423 -93399433 + L1MC LINE L1 4011 4017 -2129 5 802 756 172 282 0 chr11 28444423 28444597 -93399259 - URR1B DNA MER1_type -2 223 1 5 802 680 281 118 78 chr11 28444597 28445185 -93398671 + L1MC LINE L1 4018 4648 -1498 5 802 2033 117 12 19 chr11 28445195 28445518 -93398338 - ORR1A4 LTR MaLR -8 321 1 5 802 551 302 27 46 chr11 28445520 28445891 -93397965 + L1MC LINE L1 4654 5017 -1129 5 802 1829 183 21 54 chr11 28445893 28446280 -93397576 - ORR1C1 LTR MaLR -4 374 1 5 802 907 227 50 5 chr11 28446517 28446716 -93397140 + B3 SINE B2 4 211 -5 5 802 302 346 77 0 chr11 28446717 28446847 -93397009 - MIR SINE MIR -121 141 2 5 802 196 371 62 41 chr11 28447719 28447865 -93395991 - MIRb SINE MIR -116 152 4 5 802 243 0 0 0 chr11 28448362 28448389 -93395467 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 5 802 1857 173 41 9 chr11 28448443 28448787 -93395069 + ORR1B2 LTR MaLR 4 358 -9 5 802 1129 177 75 19 chr11 28448864 28449077 -93394779 - URR1A DNA MER1_type 0 226 2 5 802 318 317 170 6 chr11 28450008 28450177 -93393679 + MLT1G LTR MaLR 407 595 0 5 802 515 56 14 0 chr11 28450695 28450766 -93393090 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 5 802 1444 189 91 3 chr11 28452569 28452867 -93390989 - MTC LTR MaLR 0 421 98 5 802 533 314 122 41 chr11 28453553 28453848 -93390008 + ORR1E LTR MaLR 41 359 0 5 802 1473 0 15 0 chr11 28455464 28455666 -93388190 + (CATATA)n Simple_repeat Simple_repeat 1 204 0 5 802 662 256 16 113 chr11 28457132 28457317 -93386539 - 7SLRNA srpRNA srpRNA -113 201 35 5 802 1065 200 75 13 chr11 28457528 28457756 -93386100 - MTC LTR MaLR -179 242 1 5 802 883 219 20 104 chr11 28457759 28458031 -93385825 + ORR1D1 LTR MaLR 1 245 -122 5 802 546 249 38 101 chr11 28458049 28458098 -93385758 + Lx9 LINE L1 6933 6985 -659 5 802 602 49 12 0 chr11 28458098 28458180 -93385676 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 5 802 546 249 38 101 chr11 28458180 28458295 -93385561 + Lx9 LINE L1 6986 7084 -560 5 802 351 113 0 0 chr11 28458295 28458348 -93385508 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 802 546 249 38 101 chr11 28458348 28458419 -93385437 + Lx9 LINE L1 7085 7154 -490 5 802 293 88 35 0 chr11 28458509 28458566 -93385290 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 5 802 1390 229 102 11 chr11 28458569 28459011 -93384845 + Lx9 LINE L1 7162 7643 -1 5 802 412 325 75 82 chr11 28459255 28459547 -93384309 + B4A SINE B4 3 292 0 5 802 280 286 0 0 chr11 28459549 28459619 -93384237 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 802 206 284 24 12 chr11 28459624 28459706 -93384150 + GA-rich Low_complexity Low_complexity 2 84 0 5 802 729 225 22 47 chr11 28460367 28460597 -93383259 - RLTR25A LTR ERVK 0 1103 752 5 802 3928 176 58 27 chr11 28460801 28461503 -93382353 - RLTR25B LTR ERVK -185 843 116 5 802 510 61 0 0 chr11 28461503 28461569 -93382287 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 802 3928 176 58 27 chr11 28461569 28461684 -93382172 - RLTR25B LTR ERVK -913 115 1 5 802 468 288 64 53 chr11 28461900 28462087 -93381769 + B4A SINE B4 103 291 -1 5 802 660 238 114 5 chr11 28462124 28462335 -93381521 - Lx9 LINE L1 -165 7479 7246 5 802 758 150 14 0 chr11 28462372 28462519 -93381337 + GA-rich Low_complexity Low_complexity 3 151 0 5 802 252 260 148 37 chr11 28462534 28462642 -93381214 + Tigger15a DNA TcMar 143 262 -453 5 802 16394 198 65 51 chr11 28465262 28466426 -93377430 + Lx6 LINE L1 889 2070 -3810 5 802 348 24 0 0 chr11 28466426 28466467 -93377389 + (CCA)n Simple_repeat Simple_repeat 1 41 0 5 802 16394 190 86 33 chr11 28466467 28466680 -93377176 + Lx6 LINE L1 2071 2331 -3549 5 802 243 0 0 0 chr11 28466680 28466707 -93377149 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 802 16394 197 80 31 chr11 28466707 28470516 -93373340 + Lx6 LINE L1 2332 6280 -1180 5 802 2611 231 131 26 chr11 28470511 28471364 -93372492 + Lx6 LINE L1 6518 7460 0 5 802 1075 78 0 0 chr11 28471397 28471539 -93372317 + B1_Mm SINE Alu 6 147 0 5 802 379 78 33 22 chr11 28471543 28471635 -93372221 + (CAAAAA)n Simple_repeat Simple_repeat 4 96 0 5 802 484 280 164 6 chr11 28473205 28473646 -93370210 + L1M3 LINE L1 3928 4426 -1717 5 802 379 308 101 17 chr11 28473650 28473769 -93370087 + B4A SINE B4 1 129 -163 5 802 486 0 0 0 chr11 28473915 28473969 -93369887 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 802 445 264 41 20 chr11 28474077 28474274 -93369582 + L1M3 LINE L1 4570 4770 -1370 5 802 979 88 0 62 chr11 28474299 28474444 -93369412 - B1_Mur4 SINE Alu -13 137 2 5 802 421 233 0 0 chr11 28474527 28474600 -93369256 - BC1_Mm scRNA scRNA -69 83 11 5 802 346 275 33 24 chr11 28474630 28474842 -93369014 + L1MA7 LINE L1 6072 6285 -6 5 802 21 0 0 0 chr11 28475865 28475886 -93367970 + AT_rich Low_complexity Low_complexity 1 21 0 5 802 536 160 134 67 chr11 28477491 28477625 -93366231 + URR1B DNA MER1_type 83 225 0 5 802 188 314 80 52 chr11 28478479 28478670 -93365186 - L2c LINE L2 0 3426 3224 5 802 756 238 5 82 chr11 28479931 28480230 -93363626 + ORR1D2 LTR MaLR 5 370 0 5 802 180 217 32 32 chr11 28480431 28480493 -93363363 + MIR SINE MIR 61 122 -140 5 802 21 0 0 0 chr11 28480526 28480547 -93363309 + AT_rich Low_complexity Low_complexity 1 21 0 5 802 414 39 0 0 chr11 28483914 28483966 -93359890 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 802 461 17 17 0 chr11 28485228 28485286 -93358570 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 802 618 126 0 0 chr11 28486506 28486609 -93357247 + (TTG)n Simple_repeat Simple_repeat 3 105 0 5 802 376 254 45 60 chr11 28486806 28486940 -93356916 + MTEa LTR MaLR 241 372 -7 5 802 320 299 112 0 chr11 28487063 28487170 -93356686 + MLT1D LTR MaLR 299 417 -88 5 802 268 191 0 16 chr11 28488253 28488317 -93355539 + A-rich Low_complexity Low_complexity 4 66 0 5 802 520 193 132 0 chr11 28488727 28488841 -93355015 - B1_Mur2 SINE Alu 0 149 21 5 802 198 103 0 0 chr11 28488873 28488902 -93354954 + (GAA)n Simple_repeat Simple_repeat 1 29 0 5 802 409 324 3 46 chr11 28488933 28489193 -93354663 + GA-rich Low_complexity Low_complexity 1 248 0 5 802 31 0 0 24 chr11 28489465 28489494 -93354362 + AT_rich Low_complexity Low_complexity 1 29 0 5 802 968 209 28 28 chr11 28489494 28489710 -93354146 - B3 SINE B2 0 216 1 5 802 31 0 0 24 chr11 28489710 28489722 -93354134 + AT_rich Low_complexity Low_complexity 1 12 0 5 802 613 346 37 0 chr11 28489735 28489897 -93353959 - B3A SINE B2 -30 168 1 5 802 252 0 0 0 chr11 28489954 28489982 -93353874 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 802 306 0 0 0 chr11 28489982 28490016 -93353840 + (TGG)n Simple_repeat Simple_repeat 1 34 0 5 802 303 326 10 10 chr11 28490238 28490337 -93353519 + MER5A1 DNA MER1_type 60 158 -8 5 802 5351 167 36 9 chr11 28490981 28491913 -93351943 - RMER17B LTR ERVK 0 958 1 5 802 205 300 0 20 chr11 28492796 28492847 -93351009 - MER91B DNA Tip100 -10 180 131 5 802 453 36 0 0 chr11 28492917 28492972 -93350884 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 5 802 422 293 115 56 chr11 28493034 28493393 -93350463 - MLT2B2 LTR ERVL -168 388 15 5 802 1739 288 112 23 chr11 28494470 28495334 -93348522 + Lx8 LINE L1 6084 7024 -449 5 802 2115 138 3 0 chr11 28495351 28495669 -93348187 - ORR1A2 LTR MaLR -8 319 1 5 802 8943 143 83 16 chr11 28495669 28496516 -93347340 - ORR1A2-int LTR MaLR 0 1792 905 5 802 291 28 0 0 chr11 28496516 28496552 -93347304 + (CAA)n Simple_repeat Simple_repeat 2 37 0 5 802 8943 143 83 16 chr11 28496552 28497382 -93346474 - ORR1A2-int LTR MaLR -888 904 1 5 802 1940 130 39 0 chr11 28497386 28497693 -93346163 - ORR1A2 LTR MaLR -8 319 1 5 802 431 301 49 6 chr11 28497714 28497878 -93345978 + Lx8 LINE L1 7060 7230 -243 5 802 314 343 48 52 chr11 28498303 28498371 -93345485 - MLT2B3 LTR ERVL -277 238 1 5 802 316 281 23 175 chr11 28498371 28498548 -93345308 - MTEa LTR MaLR -229 150 1 5 802 227 209 64 32 chr11 28498614 28498708 -93345148 + (TTAGG)n Simple_repeat Simple_repeat 4 100 0 5 802 192 294 37 64 chr11 28498756 28498865 -93344991 + L2 LINE L2 2400 2505 -914 5 802 1613 196 130 39 chr11 28498936 28499380 -93344476 - RMER16 LTR ERVK 0 533 1 5 802 450 364 32 11 chr11 28499683 28499872 -93343984 - MER117 DNA MER1_type -3 194 2 5 802 22 35 0 0 chr11 28500091 28500120 -93343736 + AT_rich Low_complexity Low_complexity 1 29 0 1 802 499 270 176 0 chr11 28500551 28500699 -93343157 + MTEa LTR MaLR 1 174 -205 2 802 245 332 106 61 chr11 28502060 28502422 -93341434 + ORR1D1 LTR MaLR 1 370 -4 3 802 5898 125 110 5 chr11 28504224 28505190 -93338666 - Lx2B LINE L1 -8 6992 5926 4 802 611 213 0 0 chr11 28505385 28505493 -93338363 - PB1D10 SINE Alu -5 112 5 5 802 1261 305 79 29 chr11 28505665 28506437 -93337419 + L1MB8 LINE L1 5272 6082 -96 6 802 307 329 0 0 chr11 28507299 28507384 -93336472 + HAL1 LINE L1 1729 1813 -694 7 802 5372 80 22 7 chr11 28507385 28508114 -93335742 + Lx3_Mus LINE L1 6270 7009 0 8 802 504 0 0 0 chr11 28508409 28508465 -93335391 + (TC)n Simple_repeat Simple_repeat 2 57 0 9 802 329 320 59 39 chr11 28508472 28508625 -93335231 + MLT1A0 LTR MaLR 160 315 -50 1 802 22 56 0 0 chr11 28509355 28509391 -93334465 + AT_rich Low_complexity Low_complexity 1 36 0 1 802 1231 69 11 0 chr11 28509773 28509948 -93333908 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 1 802 240 235 0 0 chr11 28509951 28510019 -93333837 + CT-rich Low_complexity Low_complexity 1 68 0 1 802 505 105 11 11 chr11 28511017 28511104 -93332752 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 1 802 7063 68 7 25 chr11 28511400 28512607 -93331249 + L1_Mus2 LINE L1 5379 6563 -3 1 802 1752 85 126 0 chr11 28512784 28513055 -93330801 + L1Md_F2 LINE L1 6259 6563 -19 1 802 22 70 0 0 chr11 28513059 28513102 -93330754 + AT_rich Low_complexity Low_complexity 1 43 0 1 802 3941 229 102 13 chr11 28513138 28513678 -93330178 + L1_Mur3 LINE L1 58 623 -7105 1 802 2219 76 3 16 chr11 28513678 28513985 -93329871 - L1_Mus1 LINE L1 0 6567 6265 1 802 3941 204 78 15 chr11 28513985 28514781 -93329075 + L1_Mur3 LINE L1 624 1503 -4377 1 802 549 0 0 0 chr11 28514781 28514842 -93329014 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 802 3721 161 40 18 chr11 28514842 28515380 -93328476 + L1_Mur3 LINE L1 1504 2055 -3825 1 802 297 0 0 0 chr11 28515380 28515413 -93328443 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 802 481 186 18 9 chr11 28515413 28515527 -93328329 + L1_Mur3 LINE L1 2210 2324 -3556 1 802 812 126 7 0 chr11 28515529 28515672 -93328184 - L1_Mm LINE L1 -3717 2166 2023 2 802 685 96 9 9 chr11 28515670 28515786 -93328070 + MusHAL1 LINE L1 632 747 -1965 2 802 207 296 0 0 chr11 28515792 28515846 -93328010 + (CATA)n Simple_repeat Simple_repeat 4 57 0 2 802 24015 140 16 17 chr11 28516278 28521716 -93322140 + L1_Mus3 LINE L1 1193 6631 -7 2 802 550 268 169 5 chr11 28521735 28521930 -93321926 - MT2A LTR ERVL -119 414 188 2 802 330 221 23 11 chr11 28522606 28522693 -93321163 - HAL1-2a_MD LINE L1 -612 2412 2325 2 802 737 278 47 19 chr11 28522970 28523183 -93320673 - ID_B1 SINE B4 -5 219 1 2 802 27 0 0 0 chr11 28523749 28523776 -93320080 + AT_rich Low_complexity Low_complexity 1 27 0 2 802 699 253 25 40 chr11 28523783 28523981 -93319875 + B3A SINE B2 4 198 0 3 802 21 0 0 0 chr11 28524960 28524981 -93318875 + AT_rich Low_complexity Low_complexity 1 21 0 3 802 1429 258 82 97 chr11 28525169 28525860 -93317996 + Lx6 LINE L1 6754 7434 -26 3 802 1175 232 119 15 chr11 28526110 28526447 -93317409 + RMER1B Other Other 43 414 -652 3 802 464 256 238 15 chr11 28526418 28526620 -93317236 + RMER1A Other Other 1 247 -783 3 802 1310 283 146 122 chr11 28526620 28527626 -93316230 + RMER1A Other Other 1 1030 0 3 802 364 259 227 71 chr11 28527724 28527865 -93315991 + RSINE1 SINE B4 3 165 0 3 802 21 36 0 0 chr11 28527923 28527951 -93315905 + AT_rich Low_complexity Low_complexity 1 28 0 3 802 207 219 0 0 chr11 28527971 28528012 -93315844 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 802 256 250 78 0 chr11 28528085 28528149 -93315707 + ORR1D1 LTR MaLR 15 83 -291 3 802 200 167 18 18 chr11 28528454 28528509 -93315347 + T-rich Low_complexity Low_complexity 5 59 0 4 802 1090 84 14 0 chr11 28528510 28528653 -93315203 - B1_Mus1 SINE Alu -2 146 2 4 802 886 44 9 0 chr11 28528906 28529020 -93314836 + B1_Mus1 SINE Alu 34 148 0 4 802 497 145 0 0 chr11 28529050 28529133 -93314723 - Lx2B LINE L1 -354 6646 6564 4 802 377 94 0 0 chr11 28529135 28529199 -93314657 + Lx2 LINE L1 6934 6997 0 4 802 245 304 147 47 chr11 28529323 28529513 -93314343 - MIRb SINE MIR 0 262 54 4 802 22 70 0 0 chr11 28529577 28529620 -93314236 + AT_rich Low_complexity Low_complexity 1 43 0 4 802 212 225 53 53 chr11 28530252 28530327 -93313529 + MIR3 SINE MIR 10 84 -124 4 802 206 321 0 51 chr11 28531639 28531698 -93312158 - MIR SINE MIR -193 69 14 4 802 314 228 85 21 chr11 28533016 28533101 -93310755 + B1F1 SINE Alu 50 140 -9 4 802 195 42 0 0 chr11 28533101 28533125 -93310731 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 802 194 324 123 26 chr11 28533327 28533441 -93310415 + MIR3 SINE MIR 32 156 -52 5 802 207 0 0 0 chr11 28533578 28533601 -93310255 + (A)n Simple_repeat Simple_repeat 1 23 0 5 802 363 23 0 0 chr11 28534201 28534245 -93309611 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 802 292 286 113 42 chr11 28534256 28534424 -93309432 - MER5A DNA MER1_type -9 180 1 5 802 359 304 79 29 chr11 28534692 28534831 -93309025 + RSINE1 SINE B4 14 159 -6 5 802 387 0 0 0 chr11 28534919 28534962 -93308894 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 5 802 205 146 0 40 chr11 28534980 28535030 -93308826 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 802 211 232 0 18 chr11 28535037 28535094 -93308762 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 5 802 184 250 58 81 chr11 28535227 28535314 -93308542 - L2b LINE L2 -61 3314 3230 5 802 941 268 14 184 chr11 28535593 28536170 -93307686 + RMER13B LTR ERVK 397 875 -33 5 802 33 25 0 0 chr11 28536483 28536523 -93307333 + AT_rich Low_complexity Low_complexity 1 40 0 6 802 1265 261 27 61 chr11 28537715 28538090 -93305766 + MTEa LTR MaLR 1 362 -17 6 802 274 290 84 21 chr11 28540191 28540286 -93303570 - RMER20B LTR ERVK -207 420 320 6 802 1529 131 5 0 chr11 28540292 28540513 -93303343 + ORR1A2 LTR MaLR 1 222 -105 6 802 203 320 95 19 chr11 28540790 28540895 -93302961 + MIRc SINE MIR 5 117 -151 6 802 681 298 50 39 chr11 28540924 28541182 -93302674 + RLTR16 LTR ERVK 32 292 -213 6 802 634 273 103 4 chr11 28541501 28541773 -93302083 - MER33 DNA MER1_type 0 324 26 6 802 961 228 223 10 chr11 28541870 28542171 -93301685 - MTEa LTR MaLR -5 374 10 6 802 219 293 24 24 chr11 28542409 28542493 -93301363 - L3 LINE CR1 -108 4381 4298 6 802 182 259 65 86 chr11 28543724 28543817 -93300039 + MIRm SINE MIR 104 194 -82 6 802 186 43 0 0 chr11 28543954 28543977 -93299879 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 7 802 252 0 0 0 chr11 28544189 28544217 -93299639 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 7 802 372 214 90 97 chr11 28544285 28544430 -93299426 - ORR1E LTR MaLR -160 199 56 7 802 1566 184 186 45 chr11 28544492 28545004 -93298852 + RLTR31A_Mm LTR ERVK 1 584 0 7 802 2961 73 29 5 chr11 28546453 28546864 -93296992 - BGLII LTR ERVK 0 421 1 7 802 22 0 0 0 chr11 28547996 28548018 -93295838 + AT_rich Low_complexity Low_complexity 1 22 0 7 802 283 312 25 0 chr11 28548594 28548674 -93295182 + RSINE1 SINE B4 65 146 -19 7 802 1513 199 76 25 chr11 28548973 28549327 -93294529 + RLTR41 LTR ERV1 2 408 -38 7 802 234 114 0 0 chr11 28549330 28549365 -93294491 + RLTR6_Mm LTR ERV1 610 644 -10 7 802 779 311 41 65 chr11 28550577 28551069 -93292787 + MuRRS4-int LTR ERV1 1423 1986 -5792 7 802 357 24 0 0 chr11 28551070 28551112 -93292744 + (GGA)n Simple_repeat Simple_repeat 1 42 0 8 802 416 86 14 0 chr11 28551102 28551172 -93292684 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 8 802 261 292 69 35 chr11 28551284 28551458 -93292398 + MuRRS4-int LTR ERV1 2236 2415 -5363 7 802 273 336 21 47 chr11 28551653 28551887 -93291969 + MuLV-int LTR ERV1 4027 4254 -3352 8 802 190 292 0 0 chr11 28551905 28551953 -93291903 + L3 LINE CR1 1633 1680 -2809 8 802 1636 283 10 6 chr11 28552446 28552926 -93290930 + MuRRS4-int LTR ERV1 3533 4014 -1049 7 802 979 222 68 14 chr11 28553033 28553252 -93290604 + RLTR41 LTR ERV1 216 446 0 8 802 863 333 34 72 chr11 28554273 28555005 -93288851 - RodERV21-int LTR ERV1 -1532 3459 2756 8 802 339 44 0 0 chr11 28556077 28556122 -93287734 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 8 802 378 269 39 0 chr11 28556913 28557017 -93286839 + PB1D10 SINE Alu 1 108 -9 8 802 26 30 0 0 chr11 28557463 28557496 -93286360 + AT_rich Low_complexity Low_complexity 1 33 0 8 802 240 127 63 0 chr11 28559992 28560055 -93283801 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 8 802 228 207 83 33 chr11 28560136 28560196 -93283660 + MLT1E1A LTR MaLR 441 503 -177 9 802 558 29 0 0 chr11 28560258 28560326 -93283530 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 802 1087 313 145 38 chr11 28560344 28561125 -93282731 + Zaphod DNA Tip100 116 979 -3052 9 802 3371 48 0 7 chr11 28561132 28561550 -93282306 - L1Md_F3 LINE L1 -16 6568 6154 9 802 1555 218 83 28 chr11 28561622 28562019 -93281837 + MTD LTR MaLR 1 419 0 9 802 250 253 96 87 chr11 28562419 28562523 -93281333 + MER5B DNA MER1_type 3 107 -71 9 802 24 32 0 0 chr11 28563734 28563765 -93280091 + AT_rich Low_complexity Low_complexity 1 31 0 9 802 40 0 0 0 chr11 28563868 28563908 -93279948 + AT_rich Low_complexity Low_complexity 1 40 0 9 802 3356 62 32 7 chr11 28563910 28564352 -93279504 - L1Md_F2 LINE L1 -9 6573 6121 9 802 2509 46 3 0 chr11 28564352 28564675 -93279181 + L1Md_F2 LINE L1 5841 6164 -418 9 802 3988 61 2 0 chr11 28564677 28565170 -93278686 - L1_Mus1 LINE L1 -10 6557 6064 9 802 2574 50 24 0 chr11 28565170 28565510 -93278346 + L1_Mus1 LINE L1 5773 6120 -447 9 802 506 16 16 0 chr11 28565513 28565576 -93278280 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 802 2769 287 61 23 chr11 28565756 28566806 -93277050 + Lx8 LINE L1 6359 7448 -25 1 802 22 56 0 0 chr11 28566818 28566854 -93277002 + AT_rich Low_complexity Low_complexity 1 36 0 1 802 458 322 27 20 chr11 28566877 28567026 -93276830 + B3A SINE B2 1 150 -48 1 802 318 26 0 0 chr11 28567048 28567087 -93276769 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 802 255 296 92 29 chr11 28567353 28567527 -93276329 + L1M5 LINE L1 5676 5860 -380 1 802 305 296 78 39 chr11 28567559 28567661 -93276195 + PB1D10 SINE Alu 6 111 -6 1 802 214 167 48 0 chr11 28567671 28567713 -93276143 + GA-rich Low_complexity Low_complexity 3 46 0 1 802 924 95 81 7 chr11 28568220 28568368 -93275488 - L1_Mus2 LINE L1 0 6566 6408 1 802 288 0 0 0 chr11 28570151 28570183 -93273673 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 802 198 0 0 0 chr11 28570705 28570727 -93273129 + (A)n Simple_repeat Simple_repeat 1 22 0 1 802 256 286 61 61 chr11 28572168 28572250 -93271606 + ID4_ SINE ID 2 83 0 1 802 212 250 214 0 chr11 28572997 28573081 -93270775 + MIRb SINE MIR 167 268 0 1 100 751 29 20 0 chr11 28573670 28573772 -93270084 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 1 803 507 284 84 80 chr11 28574231 28574518 -93269338 - B4A SINE B4 -4 288 1 1 803 244 295 41 31 chr11 28574711 28574809 -93269047 + MTE2b LTR MaLR 278 376 -3 1 803 1018 37 22 0 chr11 28576171 28576307 -93267549 - L1Md_F2 LINE L1 -2 6580 6442 1 803 2664 27 6 0 chr11 28576307 28576638 -93267218 - L1Md_F2 LINE L1 -255 6327 5995 1 803 10186 55 1 1 chr11 28576624 28578103 -93265753 + L1Md_F2 LINE L1 4514 5993 -589 1 803 428 181 19 34 chr11 28579646 28579897 -93263959 + GA-rich Low_complexity Low_complexity 1 247 0 1 803 219 232 36 0 chr11 28581563 28581619 -93262237 + GA-rich Low_complexity Low_complexity 6 63 0 1 803 441 0 0 0 chr11 28581945 28581994 -93261862 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 803 28 0 0 0 chr11 28582276 28582304 -93261552 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 186 133 0 0 chr11 28582931 28582961 -93260895 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 1 803 25 31 0 0 chr11 28583003 28583035 -93260821 + AT_rich Low_complexity Low_complexity 1 32 0 1 803 360 0 0 0 chr11 28584047 28584087 -93259769 + (T)n Simple_repeat Simple_repeat 1 40 0 1 803 1151 54 0 13 chr11 28584087 28584236 -93259620 - B1_Mus2 SINE Alu 0 147 1 1 803 1156 61 139 6 chr11 28587504 28587670 -93256186 + B2_Mm2 SINE B2 1 188 -7 1 803 191 238 198 12 chr11 28588650 28588731 -93255125 + MER5A DNA MER1_type 63 158 -31 1 803 777 85 9 0 chr11 28589045 28589151 -93254705 - B2_Mm1t SINE B2 -84 109 3 1 803 286 330 84 11 chr11 28589457 28589635 -93254221 + MIRb SINE MIR 39 229 -39 1 803 24 0 0 0 chr11 28589765 28589789 -93254067 + AT_rich Low_complexity Low_complexity 1 24 0 1 803 230 274 71 0 chr11 28590891 28590975 -93252881 + (CATG)n Simple_repeat Simple_repeat 3 92 0 1 803 217 304 43 0 chr11 28591420 28591489 -93252367 - L2c LINE L2 -21 3366 3295 1 803 246 361 53 26 chr11 28591812 28591963 -93251893 + MIR3 SINE MIR 3 157 -51 1 803 295 292 57 71 chr11 28592046 28592186 -93251670 - MIRm SINE MIR -125 151 14 1 803 21 57 0 0 chr11 28596019 28596054 -93247802 + AT_rich Low_complexity Low_complexity 1 35 0 1 803 213 266 203 0 chr11 28596068 28596132 -93247724 - L2c LINE L2 -33 3354 3278 1 803 225 0 0 0 chr11 28596946 28596971 -93246885 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 803 294 254 214 20 chr11 28597340 28597541 -93246315 - L1MD2 LINE L1 -220 6139 5900 1 803 459 0 0 0 chr11 28598502 28598553 -93245303 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 803 285 297 62 0 chr11 28598573 28598670 -93245186 - MIRm SINE MIR -46 162 60 1 803 340 299 73 15 chr11 28599638 28599774 -93244082 - MIRb SINE MIR -34 234 91 1 803 214 214 110 97 chr11 28599985 28600140 -93243716 + MIRb SINE MIR 6 162 -106 1 803 306 0 0 0 chr11 28602003 28602037 -93241819 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 803 24245 135 11 7 chr11 28602803 28607892 -93235964 - L1_Mus3 LINE L1 -4 6634 1528 1 803 4676 175 18 24 chr11 28607866 28608821 -93235035 - L1VL2 LINE L1 -5291 1044 96 1 803 270 0 0 0 chr11 28610172 28610202 -93233654 + (A)n Simple_repeat Simple_repeat 1 30 0 1 803 256 374 102 0 chr11 28611708 28611855 -93232001 + MIR SINE MIR 36 197 -65 1 803 6743 138 8 24 chr11 28613666 28614362 -93229494 - L1_Mm LINE L1 -2029 3854 3177 1 803 207 0 0 0 chr11 28614362 28614385 -93229471 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 803 6743 138 8 24 chr11 28614385 28614876 -93228980 - L1_Mm LINE L1 -2707 3176 2687 1 803 7178 108 16 1 chr11 28614876 28616292 -93227564 + L1_Mus3 LINE L1 5195 6630 -8 1 803 22 35 0 0 chr11 28616301 28616330 -93227526 + AT_rich Low_complexity Low_complexity 1 29 0 1 803 1271 67 6 0 chr11 28617727 28617906 -93225950 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 803 504 32 0 0 chr11 28618275 28618337 -93225519 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 803 29603 166 29 27 chr11 28618794 28621493 -93222363 + L1_Mus2 LINE L1 316 3038 -2845 1 803 4377 132 47 17 chr11 28621493 28622277 -93221579 - RMER17D2 LTR ERVK -1 808 1 1 803 29603 109 11 6 chr11 28622277 28625802 -93218054 + L1_Mus2 LINE L1 3039 6564 -2 1 803 22 0 0 0 chr11 28625889 28625911 -93217945 + AT_rich Low_complexity Low_complexity 1 22 0 1 803 279 219 195 32 chr11 28627213 28627336 -93216520 + MER5A1 DNA MER1_type 23 165 -1 1 803 181 313 241 0 chr11 28627490 28627573 -93216283 - MIRb SINE MIR -148 120 18 1 803 186 245 3 86 chr11 28628574 28628662 -93215194 + MIRb SINE MIR 94 178 -90 1 803 24 53 0 0 chr11 28629562 28629600 -93214256 + AT_rich Low_complexity Low_complexity 1 38 0 1 803 361 314 12 19 chr11 28632036 28632198 -93211658 + C-rich Low_complexity Low_complexity 1 161 0 1 803 799 305 55 26 chr11 28632623 28633003 -93210853 - L1MB2 LINE L1 -92 6079 5689 1 803 223 329 11 34 chr11 28633221 28633309 -93210547 + PB1 SINE Alu 12 97 -30 1 803 1298 256 135 43 chr11 28635795 28636743 -93207113 + L1MC1 LINE L1 1449 2215 -4293 1 803 1133 276 135 119 chr11 28636867 28637868 -93205988 + L1MC1 LINE L1 2387 3565 -2756 1 803 862 177 196 16 chr11 28637868 28638057 -93205799 + URR1A DNA MER1_type 4 226 0 1 803 1133 276 135 119 chr11 28638057 28639292 -93204564 + L1MC1 LINE L1 3566 4658 -1663 1 803 7203 84 9 3 chr11 28639320 28640430 -93203426 - L1_Mus2 LINE L1 -3 6563 5447 1 803 16593 82 8 0 chr11 28640425 28643481 -93200375 - L1Md_T LINE L1 -1 6581 3498 1 803 229 229 270 18 chr11 28643476 28643587 -93200269 - L1Md_F LINE L1 -5867 652 514 1 803 1240 249 90 36 chr11 28643597 28644065 -93199791 + L1MC1 LINE L1 5053 5544 -777 1 803 609 173 39 136 chr11 28644065 28644219 -93199637 + B1_Mur4 SINE Alu 5 143 -7 1 803 1297 253 94 82 chr11 28644219 28644838 -93199018 + L1MC1 LINE L1 5545 6171 -337 1 803 3314 38 5 0 chr11 28645092 28645486 -93198370 - MTA_Mm LTR MaLR 0 396 1 1 803 893 268 71 38 chr11 28646692 28647056 -93196800 - MTD LTR MaLR 0 407 14 1 803 1425 74 5 0 chr11 28647080 28647269 -93196587 + Lx LINE L1 6230 6419 -235 1 803 393 133 0 26 chr11 28647269 28647346 -93196510 + Lx LINE L1 6574 6648 -6 1 803 244 243 14 41 chr11 28648399 28648472 -93195384 + Charlie19a DNA Charlie 282 352 -34 1 803 1034 109 0 7 chr11 28648613 28648760 -93195096 + B1_Mus1 SINE Alu 2 147 -1 1 803 788 278 10 54 chr11 28648781 28648986 -93194870 + B3 SINE B2 1 196 -20 1 803 258 179 0 0 chr11 28648997 28649053 -93194803 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 803 243 340 19 19 chr11 28649708 28649813 -93194043 - MIR SINE MIR -58 204 100 1 803 343 282 48 8 chr11 28651304 28651429 -93192427 + L1ME3A LINE L1 6041 6170 -3 1 803 191 278 110 14 chr11 28651980 28652053 -93191803 + MIRb SINE MIR 173 252 -16 1 803 220 358 31 10 chr11 28652080 28652176 -93191680 - MIRb SINE MIR -48 220 123 1 803 6126 108 15 35 chr11 28653761 28654752 -93189104 - L1_Mur2 LINE L1 -1732 4145 3175 1 803 249 33 0 0 chr11 28654792 28654822 -93189034 + (T)n Simple_repeat Simple_repeat 1 30 0 1 803 3355 5 0 0 chr11 28654833 28655209 -93188647 - L1Md_A LINE L1 0 6582 6207 1 803 394 284 19 38 chr11 28655521 28655627 -93188229 - B4A SINE B4 -188 104 1 1 803 553 262 32 8 chr11 28657643 28657766 -93186090 + B4A SINE B4 135 260 -32 1 803 249 253 27 0 chr11 28657776 28657851 -93186005 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 1 803 1960 60 0 0 chr11 28658357 28658605 -93185251 + L1_Mus1 LINE L1 6319 6566 -1 1 803 378 0 0 0 chr11 28659619 28659661 -93184195 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 803 183 42 0 0 chr11 28659661 28659684 -93184172 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 803 790 69 0 0 chr11 28659684 28659785 -93184071 - B1_Mus1 SINE Alu -9 139 39 1 803 361 252 35 14 chr11 28663192 28663333 -93180523 + L1MA10 LINE L1 6181 6324 -10 1 803 180 0 0 0 chr11 28663449 28663469 -93180387 + (T)n Simple_repeat Simple_repeat 1 20 0 1 803 540 283 22 0 chr11 28664370 28664508 -93179348 + ERVL-B4-int LTR ERVL 2387 2527 -3187 1 803 24 53 0 0 chr11 28664532 28664570 -93179286 + AT_rich Low_complexity Low_complexity 1 38 0 1 803 392 340 70 19 chr11 28664600 28664756 -93179100 + RSINE1 SINE B4 2 165 0 1 803 1102 282 65 42 chr11 28664788 28665236 -93178620 + ERVL-B4-int LTR ERVL 3922 4379 -1335 1 803 3080 114 51 0 chr11 28665236 28665723 -93178133 - Lx LINE L1 -82 6556 6033 1 803 302 188 47 0 chr11 28665763 28665827 -93178029 - ERVL-B4-int LTR ERVL -1286 4428 4362 1 803 10510 98 8 11 chr11 28665829 28666901 -93176955 - L1Md_F LINE L1 -3085 2798 1734 1 803 963 0 0 0 chr11 28666901 28667008 -93176848 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 1 803 180 0 0 0 chr11 28667016 28667036 -93176820 + (TTATA)n Simple_repeat Simple_repeat 5 24 0 1 803 8726 150 33 57 chr11 28667036 28668371 -93175485 - L1Md_F LINE L1 -4150 1733 410 1 803 234 62 0 0 chr11 28668460 28668492 -93175364 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 803 274 317 140 79 chr11 28668821 28668999 -93174857 - LTR33 LTR ERVL 0 515 327 2 803 1963 184 10 24 chr11 28669817 28670230 -93173626 - Lx4B LINE L1 -7 7051 6645 2 803 310 274 14 0 chr11 28671422 28671495 -93172361 + B4A SINE B4 73 146 -146 2 803 428 215 35 53 chr11 28671440 28671553 -93172303 + PB1D10 SINE Alu 6 116 -1 2 803 260 342 13 7 chr11 28671913 28672066 -93171790 - L1M5 LINE L1 -672 5772 5619 2 803 24 67 0 0 chr11 28672274 28672319 -93171537 + AT_rich Low_complexity Low_complexity 1 45 0 2 803 29182 106 25 5 chr11 28672457 28678512 -93165344 - L1_Mus1 LINE L1 -1 6566 380 2 803 14381 82 9 8 chr11 28678600 28680040 -93163816 + L1VL1 LINE L1 360 1811 -4072 2 803 1222 39 0 0 chr11 28680040 28680193 -93163663 - L1Md_A LINE L1 0 6582 6430 2 803 14381 104 3 21 chr11 28680193 28681970 -93161886 + L1VL1 LINE L1 1812 3544 -2339 2 803 2152 277 87 7 chr11 28683753 28684353 -93159503 - ORR1E-int LTR MaLR -300 1280 633 2 803 7213 131 50 5 chr11 28684382 28686327 -93157529 - L1_Mus3 LINE L1 -6 6632 4601 2 803 25976 98 32 1 chr11 28686330 28691328 -93152528 - L1Md_F3 LINE L1 0 6584 1424 2 803 1430 277 105 17 chr11 28691344 28691803 -93152053 - ORR1E-int LTR MaLR -1081 499 1 2 803 728 316 74 15 chr11 28691805 28692142 -93151714 - ORR1E LTR MaLR 0 359 3 2 803 273 261 20 89 chr11 28692145 28692246 -93151610 - MLT1A LTR MaLR -273 101 8 2 803 651 279 115 85 chr11 28692450 28692857 -93150999 - L1MA4A LINE L1 -398 5905 5469 2 803 724 199 253 17 chr11 28692857 28693031 -93150825 - B3 SINE B2 0 216 2 2 803 651 292 78 70 chr11 28693031 28693542 -93150314 - L1MA4A LINE L1 -835 5468 4926 2 803 2213 77 7 23 chr11 28693610 28693917 -93149939 - L1_Mus3 LINE L1 -7 6631 6330 2 803 3772 53 2 0 chr11 28693917 28694405 -93149451 + L1_Mus3 LINE L1 5827 6315 -323 2 803 1966 157 6 47 chr11 28694405 28694746 -93149110 - ORR1B2 LTR MaLR -40 327 1 2 803 365 313 100 16 chr11 28694747 28694891 -93148965 - L1MA4A LINE L1 -1175 4968 4805 2 803 4421 76 5 5 chr11 28694891 28695483 -93148373 + L1Md_F2 LINE L1 5990 6581 -1 2 803 365 313 100 16 chr11 28695483 28695588 -93148268 - L1MA4A LINE L1 -1339 4804 4698 2 803 29879 91 12 1 chr11 28695882 28701076 -93142780 + L1Md_F2 LINE L1 333 5586 -297 2 803 7341 81 1 5 chr11 28701077 28702069 -93141787 + L1Md_F2 LINE L1 5588 6575 -7 2 803 24 32 0 0 chr11 28702203 28702234 -93141622 + AT_rich Low_complexity Low_complexity 1 31 0 2 803 1958 150 44 65 chr11 28702753 28703080 -93140776 + ORR1C1 LTR MaLR 1 335 -43 2 803 1075 108 0 0 chr11 28703080 28703219 -93140637 + B1_Mus1 SINE Alu 1 139 -9 2 803 234 0 0 0 chr11 28703219 28703245 -93140611 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 803 1958 150 44 65 chr11 28703245 28703302 -93140554 + ORR1C1 LTR MaLR 336 377 -1 2 803 618 259 6 65 chr11 28703412 28703581 -93140275 + B4 SINE B4 90 248 -44 2 803 439 101 25 0 chr11 28703621 28703700 -93140156 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 803 750 53 0 0 chr11 28704320 28704415 -93139441 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 804 204 337 10 30 chr11 28704966 28705067 -93138789 - MIR SINE MIR -1 261 163 2 804 845 326 64 0 chr11 28705256 28705520 -93138336 + B4 SINE B4 8 288 -4 2 804 196 357 0 18 chr11 28708120 28708177 -93135679 + L2a LINE L2 3352 3407 -19 2 804 6777 57 2 1 chr11 28709971 28710855 -93133001 + L1_Mus2 LINE L1 5681 6565 -1 2 804 320 279 104 19 chr11 28711409 28711515 -93132341 - B1_Mur2 SINE Alu 0 149 35 2 804 711 98 0 0 chr11 28712507 28712630 -93131226 + (GA)n Simple_repeat Simple_repeat 1 123 0 2 804 305 249 7 14 chr11 28713536 28713625 -93130231 + L3 LINE CR1 4281 4362 -127 2 804 2511 48 22 0 chr11 28714402 28714762 -93129094 - L1_Mus1 LINE L1 0 6567 6250 2 804 180 0 0 0 chr11 28715833 28715853 -93128003 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 2 804 204 129 31 46 chr11 28716339 28716404 -93127452 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 2 804 314 339 107 27 chr11 28716427 28716688 -93127168 + L1ME4a LINE L1 5606 5887 -237 2 804 297 244 175 25 chr11 28716845 28716925 -93126931 + RSINE1 SINE B4 14 105 -60 2 804 603 78 0 0 chr11 28716939 28717029 -93126827 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 804 26500 102 14 1 chr11 28720342 28722687 -93121169 - L1_Mus2 LINE L1 0 6566 4206 2 804 879 83 0 0 chr11 28722687 28722808 -93121048 + (TA)n Simple_repeat Simple_repeat 1 121 0 2 804 26500 146 34 32 chr11 28722808 28726781 -93117075 - L1_Mus2 LINE L1 -1678 4205 220 2 804 25 31 0 0 chr11 28726957 28726989 -93116867 + AT_rich Low_complexity Low_complexity 1 32 0 2 804 5942 144 28 9 chr11 28727551 28729023 -93114833 - Lx LINE L1 0 6654 5159 2 804 196 215 176 44 chr11 28729184 28729252 -93114604 - L2a LINE L2 -5 3421 3345 2 804 29 60 0 0 chr11 28730524 28730574 -93113282 + AT_rich Low_complexity Low_complexity 1 50 0 2 804 305 0 50 0 chr11 28730907 28730947 -93112909 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2 804 338 303 71 42 chr11 28731304 28731566 -93112290 + L1MEd LINE L1 774 1034 -5191 2 804 355 204 30 4 chr11 28731980 28732073 -93111783 - B4A SINE B4 -41 251 152 2 804 273 293 90 78 chr11 28732405 28732738 -93111118 - L1MA4 LINE L1 -373 5927 5591 2 804 840 237 65 5 chr11 28732856 28733055 -93110801 + B3 SINE B2 2 212 -4 2 804 29 78 0 0 chr11 28733131 28733195 -93110661 + AT_rich Low_complexity Low_complexity 1 64 0 2 804 27 49 0 0 chr11 28733382 28733423 -93110433 + AT_rich Low_complexity Low_complexity 1 41 0 2 804 325 337 19 19 chr11 28733898 28734004 -93109852 + LFSINE_Vert SINE SINE 3 108 -351 2 804 181 0 0 65 chr11 28735671 28735702 -93108154 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 804 5467 160 51 21 chr11 28736636 28737752 -93106104 - Lx3C LINE L1 -85 6891 5743 2 804 4038 192 155 43 chr11 28737752 28737766 -93106090 - Lx9 LINE L1 -144 7500 7487 2 804 450 0 0 0 chr11 28737766 28737816 -93106040 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2 804 4038 192 155 43 chr11 28737816 28739007 -93104849 - Lx9 LINE L1 -158 7486 6160 2 804 369 0 0 0 chr11 28739028 28739069 -93104787 + (T)n Simple_repeat Simple_repeat 1 41 0 2 804 450 183 122 0 chr11 28739627 28739758 -93104098 + L1MA5 LINE L1 6126 6272 -28 2 804 24 53 0 0 chr11 28740196 28740234 -93103622 + AT_rich Low_complexity Low_complexity 1 38 0 2 804 936 252 89 65 chr11 28741969 28742338 -93101518 - MTEb LTR MaLR 0 379 2 2 804 4352 187 52 8 chr11 28742454 28743005 -93100851 + Lx5 LINE L1 6182 6741 -309 2 804 441 0 0 0 chr11 28743005 28743054 -93100802 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 804 4352 187 52 8 chr11 28743054 28743321 -93100535 + Lx5 LINE L1 6742 7035 -15 2 804 255 61 0 0 chr11 28743321 28743354 -93100502 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 2 804 339 304 8 34 chr11 28744717 28744836 -93099020 + PB1D10 SINE Alu 1 116 -1 2 804 1655 26 0 5 chr11 28745741 28745934 -93097922 + B2_Mm1a SINE B2 2 193 0 2 804 230 352 25 19 chr11 28745991 28746153 -93097703 - RSINE1 SINE B4 -1 164 2 2 804 560 256 62 8 chr11 28746977 28747107 -93096749 + ID_B1 SINE B4 81 217 -7 2 804 241 255 80 40 chr11 28747006 28747157 -93096699 - YREP_Mm Unknown Unknown -1531 281 125 2 804 299 168 250 0 chr11 28747187 28747265 -93096591 - B1F1 SINE Alu -8 109 15 2 804 225 273 0 68 chr11 28747222 28747281 -93096575 - B4A SINE B4 -150 142 88 2 804 727 319 180 20 chr11 28747469 28748131 -93095725 - Charlie13a DNA Charlie -43 1471 704 2 804 372 274 80 0 chr11 28748873 28748986 -93094870 - MIRc SINE MIR -118 150 29 2 804 216 0 0 0 chr11 28749546 28749570 -93094286 + (A)n Simple_repeat Simple_repeat 1 24 0 2 804 910 196 6 12 chr11 28749998 28750163 -93093693 + RSINE1 SINE B4 2 165 0 2 804 4884 30 0 0 chr11 28750702 28751271 -93092585 + L1Md_T LINE L1 6014 6582 0 2 804 270 306 116 32 chr11 28751295 28751579 -93092277 + L1ME1 LINE L1 5627 5934 -245 2 804 548 361 149 3 chr11 28751581 28751970 -93091886 - L2 LINE L2 -638 2781 2336 2 804 333 47 0 0 chr11 28752675 28752718 -93091138 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 804 210 207 34 17 chr11 28753159 28753218 -93090638 + CT-rich Low_complexity Low_complexity 3 62 0 2 804 22 0 0 0 chr11 28755184 28755206 -93088650 + AT_rich Low_complexity Low_complexity 1 22 0 2 804 284 239 53 11 chr11 28755739 28755816 -93088040 - B1F SINE Alu -37 112 41 2 804 23 0 0 0 chr11 28757730 28757753 -93086103 + AT_rich Low_complexity Low_complexity 1 23 0 2 804 770 214 14 0 chr11 28757753 28757893 -93085963 + RSINE1 SINE B4 3 144 -21 2 804 417 375 134 19 chr11 28757965 28758226 -93085630 + B4A SINE B4 1 291 -1 2 804 474 18 0 0 chr11 28758333 28758388 -93085468 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 804 30667 85 40 8 chr11 28758453 28763893 -93079963 - Lx3_Mus LINE L1 -8 7001 1431 2 804 234 0 0 0 chr11 28763893 28763919 -93079937 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 804 30667 143 100 23 chr11 28763919 28764880 -93078976 - Lx3_Mus LINE L1 -4456 1430 5 2 804 367 340 28 66 chr11 28768077 28768234 -93075622 - MIR SINE MIR -3 259 105 2 804 577 270 6 17 chr11 28768234 28768411 -93075445 + MER5B DNA MER1_type 1 175 -3 2 804 367 340 28 66 chr11 28768411 28768464 -93075392 - MIR SINE MIR -158 104 57 2 804 21 36 0 0 chr11 28768880 28768908 -93074948 + AT_rich Low_complexity Low_complexity 1 28 0 2 804 2068 294 59 28 chr11 28769953 28770764 -93073092 - Lx9 LINE L1 -451 7193 6358 2 804 312 27 0 0 chr11 28770793 28770830 -93073026 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 804 208 229 21 0 chr11 28770853 28770901 -93072955 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 804 244 272 25 159 chr11 28771142 28771343 -93072513 - Lx9 LINE L1 -1690 5954 5781 2 804 32313 98 11 17 chr11 28771342 28777731 -93066125 - L1Md_F2 LINE L1 -12 6570 215 2 804 235 204 284 0 chr11 28777734 28777822 -93066034 - Lx9 LINE L1 -85 5762 5650 2 804 256 241 134 50 chr11 28777861 28778062 -93065794 + Lx9 LINE L1 7408 7625 -19 2 804 522 333 0 14 chr11 28779849 28779992 -93063864 + RSINE1 SINE B4 19 159 -6 2 804 255 61 0 0 chr11 28779999 28780032 -93063824 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 804 415 306 95 20 chr11 28780954 28781101 -93062755 + MER5A DNA MER1_type 27 184 -5 2 804 1717 64 0 0 chr11 28782605 28782824 -93061032 + L1_Mus1 LINE L1 6348 6566 -1 2 804 652 257 61 0 chr11 28783923 28784071 -93059785 - RSINE1 SINE B4 -4 161 5 3 804 860 246 23 19 chr11 28784197 28784412 -93059444 - B3 SINE B2 0 216 1 3 804 629 231 58 25 chr11 28784416 28784656 -93059200 - L1MA7 LINE L1 0 6291 6044 3 804 7395 68 23 1 chr11 28784670 28785908 -93057948 - L1_Mus2 LINE L1 0 6566 5303 3 804 262 252 143 45 chr11 28785900 28786054 -93057802 - L1MA7 LINE L1 -231 6060 5892 3 804 1073 290 45 85 chr11 28788682 28789081 -93054775 - MLT2B2 LTR ERVL -132 383 1 3 804 265 370 28 0 chr11 28789346 28789454 -93054402 - MER5A1 DNA MER1_type 0 166 56 3 804 466 351 53 46 chr11 28790739 28791002 -93052854 - MLT1F2 LTR MaLR -158 402 138 3 804 1188 62 0 0 chr11 28791027 28791173 -93052683 + B1_Mm SINE Alu 2 147 0 3 804 24 0 0 0 chr11 28791344 28791368 -93052488 + AT_rich Low_complexity Low_complexity 1 24 0 3 804 648 227 178 60 chr11 28791395 28791761 -93052095 - RLTR9E LTR ERVK 0 409 1 3 804 437 62 31 0 chr11 28793283 28793347 -93050509 + (TTTTC)n Simple_repeat Simple_repeat 3 68 0 3 804 180 0 0 0 chr11 28793462 28793482 -93050374 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 804 198 0 0 0 chr11 28793739 28793761 -93050095 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 3 804 27 0 0 0 chr11 28793814 28793841 -93050015 + AT_rich Low_complexity Low_complexity 1 27 0 3 804 1087 298 98 16 chr11 28793994 28794421 -93049435 - Lx8 LINE L1 -207 7266 6805 3 804 581 151 0 0 chr11 28794705 28794798 -93049058 - B1_Mus1 SINE Alu -54 94 2 3 804 349 255 61 41 chr11 28794710 28794808 -93049048 - B4 SINE B4 -113 179 80 3 804 333 0 0 0 chr11 28795095 28795132 -93048724 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 3 804 1177 120 26 0 chr11 28795612 28795804 -93048052 - L1_Mm LINE L1 -525 5358 5162 3 804 4860 92 3 1 chr11 28795804 28796469 -93047387 + L1_Mus3 LINE L1 5969 6634 -4 3 804 200 276 44 141 chr11 28797111 28797246 -93046610 - L2c LINE L2 -228 3159 3038 3 804 195 365 101 7 chr11 28798501 28798639 -93045217 - MIRc SINE MIR -36 232 82 3 804 610 288 171 12 chr11 28798694 28798940 -93044916 + B4A SINE B4 2 286 -6 3 804 200 338 13 0 chr11 28798946 28799023 -93044833 + (CATA)n Simple_repeat Simple_repeat 1 78 0 3 804 362 297 136 17 chr11 28801534 28801770 -93042086 - L1MEg LINE L1 -3386 2760 2497 3 804 323 248 17 34 chr11 28802270 28802387 -93041469 - L1MEg LINE L1 -4268 1974 1860 3 804 210 279 16 0 chr11 28802453 28802514 -93041342 + (TATG)n Simple_repeat Simple_repeat 2 63 0 3 804 392 341 16 71 chr11 28802643 28802826 -93041030 - B4A SINE B4 -117 175 3 3 804 24 0 0 0 chr11 28802826 28802850 -93041006 + AT_rich Low_complexity Low_complexity 1 24 0 3 804 756 182 50 22 chr11 28802908 28803088 -93040768 - B2_Mm2 SINE B2 -9 186 2 3 804 304 246 29 0 chr11 28803098 28803167 -93040689 - L1MEg LINE L1 -4473 1769 1699 3 804 270 397 56 28 chr11 28804314 28804493 -93039363 + MamSINE1 SINE tRNA 56 239 -51 3 804 4379 45 4 11 chr11 28805316 28805857 -93037999 + L1_Mus1 LINE L1 6025 6561 -6 3 804 270 0 0 0 chr11 28806719 28806749 -93037107 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 804 3863 93 6 4 chr11 28807312 28807853 -93036003 - Lx3A LINE L1 0 6981 6440 3 804 242 158 289 0 chr11 28810136 28810212 -93033644 - B1F SINE Alu -8 141 44 3 804 23 33 0 0 chr11 28810445 28810475 -93033381 + AT_rich Low_complexity Low_complexity 1 30 0 3 804 1040 159 154 0 chr11 28811283 28811478 -93032378 - URR1A DNA MER1_type 0 226 2 3 804 229 295 20 40 chr11 28812965 28813064 -93030792 - L2a LINE L2 -17 3409 3313 3 804 197 309 29 0 chr11 28813828 28813896 -93029960 - MIRc SINE MIR -50 218 149 3 804 504 0 0 0 chr11 28814354 28814410 -93029446 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 3 804 685 268 0 0 chr11 28814410 28814552 -93029304 - B1_Mur3 SINE Alu -7 142 1 3 804 409 253 121 0 chr11 28817371 28817462 -93026394 - PB1D9 SINE Alu -17 103 2 3 804 1323 77 28 0 chr11 28818861 28819043 -93024813 - B2_Mm2 SINE B2 -8 187 1 3 804 538 272 68 42 chr11 28819440 28819692 -93024164 + Lx4B LINE L1 6702 7037 -21 3 804 186 43 0 0 chr11 28819692 28819715 -93024141 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 804 621 58 0 0 chr11 28820556 28820642 -93023214 + (TC)n Simple_repeat Simple_repeat 2 87 0 3 804 454 283 27 20 chr11 28821141 28821289 -93022567 + B1F1 SINE Alu 1 149 0 3 804 437 312 27 0 chr11 28822718 28822830 -93021026 + B1F SINE Alu 1 115 -34 3 804 307 287 56 56 chr11 28822993 28823100 -93020756 - L2b LINE L2 -6 3369 3263 3 804 201 361 30 20 chr11 28823978 28824077 -93019779 + L2 LINE L2 1945 2044 -1375 3 804 414 278 63 94 chr11 28824185 28824344 -93019512 - B3A SINE B2 -4 194 41 3 804 1696 266 44 51 chr11 28824349 28824916 -93018940 - RLTR20B3 LTR ERVK -14 563 1 3 804 1106 174 61 9 chr11 28825223 28825437 -93018419 - URR1B DNA MER1_type 0 225 1 3 804 201 74 0 0 chr11 28825477 28825504 -93018352 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 804 339 25 0 0 chr11 28825576 28825616 -93018240 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 3 804 609 161 118 8 chr11 28825617 28825736 -93018120 - B1_Mus2 SINE Alu -15 132 1 3 804 593 70 23 0 chr11 28827107 28827193 -93016663 + (TTTTC)n Simple_repeat Simple_repeat 2 89 0 3 804 543 65 9 70 chr11 28827228 28827343 -93016513 - L1Md_F2 LINE L1 -1 6581 6474 3 804 431 74 0 0 chr11 28827343 28827397 -93016459 + L1_Mus1 LINE L1 6391 6444 -123 3 804 21 57 0 0 chr11 28827572 28827607 -93016249 + AT_rich Low_complexity Low_complexity 1 35 0 3 804 247 167 15 15 chr11 28827659 28827726 -93016130 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 804 485 273 94 30 chr11 28828598 28828832 -93015024 - L1MB5 LINE L1 -49 6125 5877 3 804 6180 91 59 20 chr11 28829401 28830333 -93013523 - L1_Mus3 LINE L1 0 6638 5671 3 804 2568 17 0 0 chr11 28830333 28830628 -93013228 + L1Md_A LINE L1 6287 6581 -1 3 804 14941 138 68 25 chr11 28830645 28834945 -93008911 - MusHAL1 LINE L1 -579 5307 562 3 804 266 346 14 57 chr11 28835044 28835185 -93008671 + MIRm SINE MIR 29 163 -113 3 804 499 201 36 42 chr11 28835465 28835585 -93008271 - RSINE1 SINE B4 -37 128 9 3 805 11232 92 24 4 chr11 28836398 28838846 -93005010 + L1_Mus2 LINE L1 4061 6565 -1 3 805 345 333 22 0 chr11 28839216 28839306 -93004550 + RSINE1 SINE B4 28 119 -46 3 805 435 83 0 0 chr11 28839310 28839370 -93004486 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 805 23 33 0 0 chr11 28839398 28839428 -93004428 + AT_rich Low_complexity Low_complexity 1 30 0 3 805 286 306 132 36 chr11 28840308 28840474 -93003382 - LTR16C LTR ERVL 0 489 308 3 805 6943 90 4 15 chr11 28840872 28842348 -93001508 - L1_Mus2 LINE L1 -1 6565 5106 3 805 5403 134 6 1 chr11 28842347 28843778 -93000078 - L1_Mus2 LINE L1 -3770 2113 675 3 805 519 342 93 26 chr11 28844123 28844393 -92999463 + Arthur1 DNA Tip100 53 340 -3607 3 805 642 26 0 0 chr11 28844617 28844693 -92999163 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 3 805 640 269 167 45 chr11 28844811 28845056 -92998800 + B4 SINE B4 4 278 -14 3 805 342 0 0 0 chr11 28845058 28845096 -92998760 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 805 592 277 184 2 chr11 28845278 28845680 -92998176 + Arthur1 DNA Tip100 3363 3837 -110 3 805 232 268 14 27 chr11 28845830 28845903 -92997953 - MLT1A1 LTR MaLR -3 405 334 3 805 189 0 0 0 chr11 28845903 28845924 -92997932 + (T)n Simple_repeat Simple_repeat 1 21 0 3 805 1024 165 47 98 chr11 28845930 28846165 -92997691 - URR1B DNA MER1_type 0 225 3 3 805 909 219 56 0 chr11 28846775 28846953 -92996903 + B3 SINE B2 1 188 -28 3 805 396 233 0 0 chr11 28847027 28847147 -92996709 + (TG)n Simple_repeat Simple_repeat 1 120 0 3 805 1578 170 181 17 chr11 28847153 28847548 -92996308 + RLTR20B2 LTR ERVK 1 464 -96 3 805 405 0 0 0 chr11 28847548 28847593 -92996263 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 805 873 213 77 23 chr11 28847593 28847687 -92996169 + RLTR20B2 LTR ERVK 465 560 0 3 805 581 224 0 13 chr11 28847687 28847922 -92995934 + (TG)n Simple_repeat Simple_repeat 1 231 0 3 805 358 242 31 5 chr11 28850013 28850118 -92993738 + B1F1 SINE Alu 14 117 0 3 805 243 0 0 0 chr11 28850228 28850255 -92993601 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 805 363 354 67 24 chr11 28851507 28851837 -92992019 + L2b LINE L2 2567 2910 -509 3 805 890 356 65 14 chr11 28851840 28852253 -92991603 + LTR16A LTR ERVL 2 435 -16 3 805 194 322 65 39 chr11 28853589 28853744 -92990112 - L2 LINE L2 -1234 2185 2027 3 805 2426 74 3 69 chr11 28853915 28854278 -92989578 - L1_Mus2 LINE L1 0 6566 6228 3 805 214 319 0 27 chr11 28854854 28854928 -92988928 + L2b LINE L2 3140 3211 -164 3 805 228 67 0 0 chr11 28856044 28856074 -92987782 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 805 315 0 0 0 chr11 28856084 28856119 -92987737 + (A)n Simple_repeat Simple_repeat 1 35 0 3 805 287 320 82 34 chr11 28856184 28856351 -92987505 - MIRc SINE MIR -79 189 3 3 805 1509 177 60 33 chr11 28857715 28858048 -92985808 - RLTR20B3 LTR ERVK 0 577 21 3 805 540 350 50 94 chr11 28858056 28858258 -92985598 - B3A SINE B2 -2 193 1 3 805 1202 39 0 13 chr11 28859569 28859726 -92984130 + L1Md_F2 LINE L1 6428 6582 0 3 805 4172 92 8 8 chr11 28859726 28860330 -92983526 + L1_Mus1 LINE L1 5964 6567 0 3 805 435 349 12 56 chr11 28860335 28860654 -92983202 + L1MEg LINE L1 1213 1517 -4567 3 805 227 233 143 11 chr11 28860857 28860902 -92982954 + L1_Rod LINE L1 2141 2189 -3658 3 805 1506 32 0 21 chr11 28860902 28861094 -92982762 - L1Md_F2 LINE L1 -11 6571 6384 3 805 227 233 143 11 chr11 28861094 28861139 -92982717 + L1_Rod LINE L1 2190 2243 -3604 3 805 222 118 0 0 chr11 28861232 28861266 -92982590 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 805 1185 284 98 27 chr11 28861276 28862052 -92981804 + Lx8 LINE L1 6941 7471 -2 4 805 183 204 0 0 chr11 28862343 28862392 -92981464 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 805 1017 271 41 48 chr11 28862414 28862708 -92981148 + B4A SINE B4 1 292 0 4 805 443 303 30 71 chr11 28862717 28863151 -92980705 + Lx8 LINE L1 3037 3452 -2691 4 805 217 0 61 0 chr11 28863273 28863306 -92980550 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 805 245 250 0 0 chr11 28863371 28863431 -92980425 - L1MB8 LINE L1 -192 5986 5927 4 805 4495 78 3 15 chr11 28863447 28863737 -92980119 - L1_Mus2 LINE L1 0 6566 6282 4 805 2908 84 2 15 chr11 28863737 28864138 -92979718 - MTA_Mm LTR MaLR 0 396 1 4 805 7443 79 10 65 chr11 28864138 28865299 -92978557 - MTA_Mm-int LTR MaLR 0 1098 1 4 805 2806 81 39 0 chr11 28865299 28865684 -92978172 - MTA_Mm LTR MaLR 0 400 1 4 805 4495 78 3 15 chr11 28865684 28865993 -92977863 - L1_Mus2 LINE L1 -285 6281 5974 4 805 1066 307 100 8 chr11 28866218 28866589 -92977267 - MTD LTR MaLR -14 405 1 4 805 1190 240 45 45 chr11 28867459 28868039 -92975817 + L1_Mur3 LINE L1 2727 3306 -2574 4 805 892 258 26 124 chr11 28868053 28868538 -92975318 + L1_Mus2 LINE L1 223 608 -6033 4 805 327 306 8 0 chr11 28868561 28868695 -92975161 + L1Md_F LINE L1 566 700 -5819 4 805 1619 187 38 0 chr11 28868695 28869038 -92974818 + L1Md_F LINE L1 627 982 -5537 4 805 34355 67 1 16 chr11 28869041 28875216 -92968640 - L1Md_F2 LINE L1 -12 6570 487 4 805 23980 106 81 6 chr11 28875354 28880472 -92963384 + L1_Mus2 LINE L1 960 6569 0 4 805 716 212 45 8 chr11 28880519 28880652 -92963204 + B1_Mur1 SINE Alu 12 149 0 4 805 259 146 0 0 chr11 28880724 28880765 -92963091 + B1_Mm SINE Alu 94 134 -13 4 805 441 66 0 0 chr11 28880765 28880826 -92963030 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 805 758 236 37 14 chr11 28880826 28881041 -92962815 + Lx8 LINE L1 4027 4246 -1634 4 805 724 207 0 70 chr11 28881042 28881198 -92962658 - RMER20B LTR ERVK 0 627 483 4 805 2188 193 48 51 chr11 28881202 28881748 -92962108 + RLTR20B3 LTR ERVK 21 564 -13 4 805 1883 240 9 82 chr11 28881752 28882278 -92961578 - RMER20B LTR ERVK -139 488 1 4 805 3897 251 38 48 chr11 28882284 28883799 -92960057 + Lx8 LINE L1 4248 5746 -134 4 805 375 234 55 69 chr11 28884244 28884469 -92959387 + Lx8 LINE L1 5753 5957 -1516 4 805 779 285 50 31 chr11 28884513 28884827 -92959029 + Lx8 LINE L1 6127 6450 -1023 4 805 1829 165 3 6 chr11 28884827 28885139 -92958717 + RLTR10E LTR ERVK 1 311 0 4 805 779 285 50 31 chr11 28885139 28885182 -92958674 + Lx8 LINE L1 6451 6491 -982 4 805 239 140 0 57 chr11 28885175 28885228 -92958628 - Lx5 LINE L1 -1223 5827 5778 4 805 909 167 14 0 chr11 28885259 28885403 -92958453 - B1_Mur3 SINE Alu -1 148 3 4 805 5714 181 29 3 chr11 28885406 28886564 -92957292 - Lx5 LINE L1 -86 5791 4603 4 805 2127 94 39 0 chr11 28886568 28886875 -92956981 - ORR1A2 LTR MaLR -8 319 1 4 805 5219 130 68 3 chr11 28886875 28887723 -92956133 - ORR1A2-int LTR MaLR 0 1963 1061 4 805 1256 112 5 0 chr11 28887723 28887911 -92955945 + Lx2 LINE L1 6454 6642 -355 4 805 1274 140 5 0 chr11 28887913 28888127 -92955729 + Lx2 LINE L1 6776 6990 -7 4 805 3804 161 50 130 chr11 28888142 28889128 -92954728 - ORR1A2-int LTR MaLR -885 907 1 4 805 1851 113 88 7 chr11 28889132 28889427 -92954429 - ORR1A2 LTR MaLR -8 319 1 4 805 821 137 0 0 chr11 28889429 28889560 -92954296 - Lx5 LINE L1 -1272 4605 4475 4 805 1371 287 69 34 chr11 28889566 28890303 -92953553 + Lx6 LINE L1 6506 7425 -35 4 805 291 317 19 29 chr11 28890346 28890450 -92953406 + ID_B1 SINE B4 4 106 -118 4 805 24 0 0 0 chr11 28890807 28890831 -92953025 + AT_rich Low_complexity Low_complexity 1 24 0 4 805 3273 46 0 0 chr11 28892863 28893253 -92950603 + L1_Mus2 LINE L1 6176 6565 -1 4 805 302 236 109 52 chr11 28894016 28894190 -92949666 + MER53 DNA hAT 9 192 -1 4 805 973 127 0 32 chr11 28894935 28895090 -92948766 - B2_Mm2 SINE B2 -37 158 9 4 805 822 86 0 0 chr11 28895091 28895207 -92948649 + (TTCC)n Simple_repeat Simple_repeat 3 118 0 4 805 288 120 0 0 chr11 28895212 28895262 -92948594 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 4 805 561 30 0 0 chr11 28895273 28895340 -92948516 + (CTTG)n Simple_repeat Simple_repeat 1 67 0 4 805 227 326 116 0 chr11 28895346 28895441 -92948415 - B1F2 SINE Alu -14 106 1 4 805 433 304 8 146 chr11 28895885 28896124 -92947732 + MER20 DNA MER1_type 13 218 -1 4 805 407 19 0 19 chr11 28896207 28896260 -92947596 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 805 481 283 0 0 chr11 28896260 28896366 -92947490 - B3A SINE B2 -92 106 1 4 805 465 90 0 0 chr11 28896420 28896487 -92947369 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 805 690 281 42 85 chr11 28897304 28897564 -92946292 + B4A SINE B4 24 272 -20 4 805 396 127 78 12 chr11 28897648 28897815 -92946041 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 805 213 108 0 0 chr11 28899365 28899402 -92944454 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 805 275 344 37 131 chr11 28901038 28901282 -92942574 + ORR1E LTR MaLR 96 316 -43 4 805 278 326 61 10 chr11 28901284 28901383 -92942473 - PB1D10 SINE Alu -2 115 12 4 805 2065 155 3 0 chr11 28901383 28901700 -92942156 + ORR1A3 LTR MaLR 1 318 -8 4 805 230 231 30 15 chr11 28901720 28901786 -92942070 + ORR1A3 LTR MaLR 293 359 0 4 805 6559 138 26 26 chr11 28902463 28903683 -92940173 + L1_Mm LINE L1 4575 5794 -89 4 805 646 20 0 20 chr11 28903681 28903781 -92940075 + L1Md_F3 LINE L1 6473 6570 -14 4 805 5119 134 18 45 chr11 28903789 28904684 -92939172 + Lx LINE L1 5784 6654 0 4 805 310 319 66 49 chr11 28904787 28904909 -92938947 + ORR1E LTR MaLR 66 189 -170 4 805 315 49 0 0 chr11 28904933 28904974 -92938882 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 805 229 271 0 0 chr11 28905130 28905178 -92938678 - B3A SINE B2 -127 71 24 4 805 2364 162 87 2 chr11 28905252 28905711 -92938145 + RMER1B Other Other 565 1062 -4 4 805 218 160 20 0 chr11 28905900 28905950 -92937906 + (TATG)n Simple_repeat Simple_repeat 3 53 0 4 805 23 33 0 0 chr11 28905965 28905995 -92937861 + AT_rich Low_complexity Low_complexity 1 30 0 4 805 442 262 41 37 chr11 28906100 28906247 -92937609 + B3 SINE B2 37 215 -1 4 805 29235 92 19 5 chr11 28906249 28911368 -92932488 + L1Md_F2 LINE L1 392 5586 -297 4 805 7211 64 2 84 chr11 28911368 28912190 -92931666 + L1Md_F2 LINE L1 5587 6328 -254 4 805 2949 62 10 15 chr11 28912190 28912580 -92931276 - RLTR10 LTR ERVK -2 388 1 4 805 7211 64 2 84 chr11 28912580 28912834 -92931022 + L1Md_F2 LINE L1 6329 6574 -8 4 805 29 47 0 0 chr11 28912834 28912877 -92930979 + AT_rich Low_complexity Low_complexity 1 43 0 4 805 429 244 27 4 chr11 28912903 28913169 -92930687 + GA-rich Low_complexity Low_complexity 1 272 0 4 805 353 232 27 27 chr11 28913180 28913326 -92930530 + GA-rich Low_complexity Low_complexity 1 146 0 4 805 359 307 0 34 chr11 28913326 28913444 -92930412 + G-rich Low_complexity Low_complexity 6 119 0 4 805 411 179 30 36 chr11 28913448 28913616 -92930240 + GA-rich Low_complexity Low_complexity 3 169 0 4 805 414 239 11 22 chr11 28913644 28913824 -92930032 + GA-rich Low_complexity Low_complexity 3 180 0 4 805 4999 246 67 29 chr11 28913923 28914013 -92929843 - Lx6 LINE L1 -74 7386 7299 4 805 216 67 0 0 chr11 28914013 28914043 -92929813 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 4 805 4999 246 67 29 chr11 28914043 28914567 -92929289 - Lx6 LINE L1 -162 7298 6758 4 805 189 0 0 0 chr11 28914567 28914588 -92929268 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 805 4999 246 67 29 chr11 28914588 28915399 -92928457 - Lx6 LINE L1 -703 6757 5906 4 805 282 331 131 65 chr11 28915458 28915626 -92928230 + B4 SINE B4 1 179 -113 4 805 195 42 0 0 chr11 28915835 28915859 -92927997 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 805 242 250 54 0 chr11 28915938 28915994 -92927862 + ID4_ SINE ID 15 73 -10 4 805 1079 255 120 7 chr11 28916216 28916516 -92927340 - MTD LTR MaLR 0 419 86 4 805 29 28 0 0 chr11 28916848 28916884 -92926972 + AT_rich Low_complexity Low_complexity 1 36 0 4 805 2004 74 7 4 chr11 28918384 28918654 -92925202 + L1_Mus2 LINE L1 6295 6565 -1 4 805 1962 207 47 24 chr11 28919078 28919572 -92924284 + Lx9 LINE L1 7007 7511 -133 4 805 239 203 28 28 chr11 28919572 28919643 -92924213 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 805 245 298 46 69 chr11 28919679 28919809 -92924047 - MER34A LTR ERV1 -36 535 409 4 805 293 157 0 38 chr11 28919823 28919876 -92923980 - ORR1B1 LTR MaLR 0 394 344 4 805 4004 234 49 46 chr11 28919877 28920016 -92923840 - RodERV21-int LTR ERV1 -107 4884 4759 4 805 879 86 50 44 chr11 28920016 28920175 -92923681 + L1_Mus3 LINE L1 6467 6626 -12 4 805 4004 234 49 46 chr11 28920175 28920994 -92922862 - RodERV21-int LTR ERV1 -233 4758 3943 4 805 803 17 25 25 chr11 28920994 28921112 -92922744 + (GAGAA)n Simple_repeat Simple_repeat 5 122 0 4 805 4004 234 49 46 chr11 28921112 28921267 -92922589 - RodERV21-int LTR ERV1 -1049 3942 3767 4 805 386 269 10 0 chr11 28921282 28921386 -92922470 - RodERV21-int LTR ERV1 -1528 3463 3359 4 805 6607 204 55 40 chr11 28922825 28923010 -92920846 - RodERV21-int LTR ERV1 -2280 2711 2514 4 805 2127 83 0 68 chr11 28923010 28923334 -92920522 + L1_Mus2 LINE L1 6265 6566 0 4 805 6607 204 55 40 chr11 28923334 28924725 -92919131 - RodERV21-int LTR ERV1 -2478 2513 1112 4 805 29212 37 108 3 chr11 28925100 28930829 -92913027 - L1Md_T LINE L1 0 6585 160 4 805 301 309 36 0 chr11 28930842 28931010 -92912846 - L1M2 LINE L1 -867 5276 5103 4 805 2289 61 3 25 chr11 28931124 28931443 -92912413 + L1Md_F2 LINE L1 6269 6580 -2 4 805 735 289 99 19 chr11 28931499 28931975 -92911881 - L1M2 LINE L1 -1156 4987 4474 4 805 1043 85 35 7 chr11 28931984 28932126 -92911730 - B1_Mus1 SINE Alu 0 148 3 4 805 360 0 0 0 chr11 28932173 28932213 -92911643 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 805 2452 266 131 24 chr11 28932303 28933213 -92910643 - Lx8 LINE L1 -132 7341 6335 4 805 1240 221 55 13 chr11 28933286 28933598 -92910258 - Lx6 LINE L1 -383 7077 6753 4 805 1986 221 72 18 chr11 28933600 28934169 -92909687 - Lx6 LINE L1 -1304 6156 5587 4 805 2545 140 39 8 chr11 28934164 28934361 -92909495 - L1_Mur3 LINE L1 -2022 3858 3659 4 805 216 86 0 0 chr11 28934361 28934396 -92909460 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4 805 2545 140 39 8 chr11 28934396 28934689 -92909167 - L1_Mur3 LINE L1 -2222 3658 3355 4 805 8570 117 37 13 chr11 28934917 28936491 -92907365 + Lx2 LINE L1 5385 6996 -1 4 805 2078 274 10 17 chr11 28936961 28937761 -92906095 + Lx6 LINE L1 6486 7436 -24 4 805 834 237 199 33 chr11 28937817 28938118 -92905738 - MTEa LTR MaLR 0 379 29 4 805 330 264 45 22 chr11 28938106 28938195 -92905661 - MTE2b LTR MaLR -274 105 15 4 805 196 271 78 56 chr11 28938289 28938379 -92905477 - MIRc SINE MIR -134 134 43 4 805 203 61 0 29 chr11 28939151 28939185 -92904671 + (TAA)n Simple_repeat Simple_repeat 2 34 0 4 805 433 258 71 64 chr11 28939759 28939892 -92903964 + RSINE1 SINE B4 4 140 -25 4 805 210 37 0 0 chr11 28939892 28939919 -92903937 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 805 27 0 0 65 chr11 28940257 28940303 -92903553 + AT_rich Low_complexity Low_complexity 1 43 0 4 805 503 278 0 0 chr11 28940307 28940415 -92903441 + PB1D10 SINE Alu 2 109 -8 4 805 31 44 0 0 chr11 28940497 28940542 -92903314 + AT_rich Low_complexity Low_complexity 1 45 0 4 805 26 64 0 0 chr11 28941312 28941359 -92902497 + AT_rich Low_complexity Low_complexity 1 47 0 4 805 2212 178 15 27 chr11 28941485 28941894 -92901962 + MTC LTR MaLR 18 421 0 4 805 2815 86 8 0 chr11 28942088 28942473 -92901383 - MTB LTR MaLR 0 400 13 4 805 243 378 30 66 chr11 28942529 28942727 -92901129 + MLT1J1 LTR MaLR 31 221 -223 5 805 15329 75 5 4 chr11 28943322 28945499 -92898357 + L1Md_F2 LINE L1 3408 5586 -297 5 805 8275 35 3 2 chr11 28945500 28946493 -92897363 + L1Md_F2 LINE L1 5588 6581 -1 5 805 1073 91 71 29 chr11 28946493 28946629 -92897227 + L1_Mm LINE L1 5452 5586 -297 5 805 7489 72 7 3 chr11 28946629 28947613 -92896243 + L1Md_F2 LINE L1 5588 6575 -7 5 805 423 121 0 0 chr11 28947613 28947679 -92896177 - L1_Mm LINE L1 -246 5637 5572 5 805 3185 135 26 23 chr11 28947679 28948210 -92895646 + RLTR13D1 LTR ERVK 1 533 -369 5 805 3783 91 22 14 chr11 28948191 28948746 -92895110 + RLTR13D1 LTR ERVK 227 785 -21 5 805 2674 145 4 0 chr11 28948753 28949209 -92894647 - L1_Mm LINE L1 -306 5577 5120 5 805 1212 159 108 7 chr11 28949224 28949503 -92894353 - L1_Mur1 LINE L1 -1036 4850 4544 5 805 3578 115 0 3 chr11 28949505 28950070 -92893786 + L1_Mur1 LINE L1 3960 4522 -1355 5 805 460 297 93 62 chr11 28950340 28950566 -92893290 - RMER2 LTR ERV1 -1 566 334 5 805 180 282 26 66 chr11 28950663 28950739 -92893117 - L4 LINE RTE -866 1163 1091 5 805 768 323 46 53 chr11 28950801 28950973 -92892883 + ORR1E LTR MaLR 52 225 -134 5 805 1435 222 101 70 chr11 28950973 28951519 -92892337 - RMER2 LTR ERV1 -4 563 1 5 805 768 323 46 53 chr11 28951519 28951627 -92892229 + ORR1E LTR MaLR 226 330 -29 5 805 35 0 0 0 chr11 28952126 28952161 -92891695 + AT_rich Low_complexity Low_complexity 1 35 0 5 805 512 262 94 41 chr11 28952171 28952342 -92891514 + B3 SINE B2 36 215 -1 5 805 617 214 26 52 chr11 28952421 28952574 -92891282 + B1_Mur2 SINE Alu 1 149 0 5 805 409 229 72 52 chr11 28953948 28954141 -92889715 - Lx7 LINE L1 -131 7565 7369 5 805 199 167 15 15 chr11 28954143 28954210 -92889646 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 5 805 11996 162 39 30 chr11 28954324 28956929 -92886927 - Lx7 LINE L1 -1904 5792 3165 5 805 2054 104 3 0 chr11 28956936 28957224 -92886632 + ORR1A2 LTR MaLR 31 319 -8 5 805 344 79 0 0 chr11 28957231 28957284 -92886572 + ORR1A2-int LTR MaLR 25 77 -1293 5 805 24580 70 10 1 chr11 28957284 28960734 -92883122 + L1Md_F2 LINE L1 2105 5586 -297 5 805 7351 80 6 3 chr11 28960734 28961727 -92882129 + L1Md_F2 LINE L1 5587 6582 0 5 805 2777 214 124 38 chr11 28961731 28962530 -92881326 - Lx7 LINE L1 -6561 1167 300 5 805 771 21 0 0 chr11 28962754 28962847 -92881009 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 805 409 231 24 108 chr11 28962955 28962981 -92880875 - RLTR20A LTR ERVK -330 230 196 5 805 297 0 0 0 chr11 28962981 28963014 -92880842 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 805 409 235 25 109 chr11 28963014 28963242 -92880614 - RLTR20A LTR ERVK -355 222 6 5 805 410 214 0 35 chr11 28963241 28963328 -92880528 + B1_Mur1 SINE Alu 61 144 -5 5 805 426 299 135 51 chr11 28963438 28963653 -92880203 - MT2A LTR ERVL -73 460 228 5 100 35607 59 10 9 chr11 28963931 28970125 -92873731 - L1Md_F3 LINE L1 -14 6573 220 5 806 274 254 16 33 chr11 28970642 28970764 -92873092 + Lx8 LINE L1 7353 7472 -1 5 806 420 145 29 131 chr11 28970774 28970980 -92872876 + RMER17C LTR ERVK 91 275 -135 5 806 25 51 0 0 chr11 28970980 28971019 -92872837 + AT_rich Low_complexity Low_complexity 1 39 0 5 806 297 314 14 0 chr11 28971031 28971101 -92872755 + ID4_ SINE ID 13 83 0 5 806 484 385 55 19 chr11 28971278 28971535 -92872321 + MLT1F LTR MaLR 43 308 -240 5 806 578 214 79 0 chr11 28971554 28971694 -92872162 + MLT1F LTR MaLR 356 506 -42 5 806 198 0 0 0 chr11 28972146 28972168 -92871688 + (CATA)n Simple_repeat Simple_repeat 2 23 0 5 806 345 172 0 0 chr11 28972236 28972329 -92871527 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 806 316 260 13 0 chr11 28972364 28972441 -92871415 - ID4_ SINE ID -2 81 4 5 806 783 68 0 48 chr11 28972739 28972863 -92870993 - L1Md_F2 LINE L1 -13 6569 6452 5 806 371 38 19 0 chr11 28972964 28973017 -92870839 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 806 466 189 0 62 chr11 28973620 28973716 -92870140 + ID_B1 SINE B4 115 204 -20 5 806 180 200 0 0 chr11 28975282 28975327 -92868529 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 5 806 7015 107 15 11 chr11 28975764 28976904 -92866952 - Lx LINE L1 -7 6647 5505 5 806 624 209 13 6 chr11 28977296 28977455 -92866401 + L1M4 LINE L1 3687 3846 -2300 5 806 17134 154 114 42 chr11 28977494 28981938 -92861918 - L1Md_F LINE L1 -1 5882 1108 5 806 37394 30 2 6 chr11 28981931 28988080 -92855776 - L1Md_T LINE L1 0 6582 464 5 806 2194 224 67 46 chr11 28988074 28988964 -92854892 - L1Md_F LINE L1 -5494 1122 224 5 806 1708 67 0 5 chr11 28989249 28989473 -92854383 + L1Md_F2 LINE L1 6348 6570 -12 5 806 267 315 55 18 chr11 28989910 28990020 -92853836 - B4 SINE B4 -93 199 86 5 806 212 288 17 0 chr11 28990038 28990097 -92853759 - MIRc SINE MIR -85 183 124 5 806 566 266 70 8 chr11 28990105 28990234 -92853622 + RSINE1 SINE B4 3 139 -26 5 806 1849 161 16 104 chr11 28990237 28990658 -92853198 - ORR1B1 LTR MaLR 0 394 8 5 806 276 254 51 80 chr11 28990687 28990824 -92853032 - MIR SINE MIR -122 140 8 5 806 944 267 0 0 chr11 28991340 28991550 -92852306 + B3 SINE B2 2 211 -5 5 806 324 70 0 0 chr11 28991727 28991770 -92852086 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 806 25 31 0 0 chr11 28991770 28991802 -92852054 + AT_rich Low_complexity Low_complexity 1 32 0 5 806 352 383 60 6 chr11 28991845 28992013 -92851843 - MER5A DNA MER1_type -2 187 11 5 806 536 308 39 0 chr11 28992304 28992434 -92851422 - RSINE1 SINE B4 -28 137 3 5 806 1894 261 109 114 chr11 28992679 28993709 -92850147 - RMER1A Other Other -5 1025 1 5 806 1515 189 81 29 chr11 28993679 28994027 -92849829 - RMER1B Other Other -651 415 50 5 806 800 260 58 51 chr11 28994024 28994445 -92849411 + RMER1B Other Other 134 722 -620 5 806 6867 110 15 7 chr11 28994454 28995469 -92848387 + RLTR13D2 LTR ERVK 1 1023 0 5 806 1429 266 75 83 chr11 28995469 28996001 -92847855 + RMER1A Other Other 71 598 -432 5 806 563 291 86 67 chr11 28996021 28996774 -92847082 + L1_Mur3 LINE L1 4940 5735 -556 5 806 467 150 125 0 chr11 28996804 28996884 -92846972 + B3 SINE B2 119 208 -8 5 806 642 234 180 6 chr11 28996903 28997075 -92846781 + MTE2a LTR MaLR 166 367 -12 5 806 644 276 144 0 chr11 28997137 28997311 -92846545 - ID_B1 SINE B4 -6 218 20 5 806 200 200 0 0 chr11 28997317 28997357 -92846499 + T-rich Low_complexity Low_complexity 4 43 0 5 806 288 0 0 0 chr11 28997592 28997624 -92846232 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 806 486 296 0 0 chr11 28997959 28998074 -92845782 - PB1D10 SINE Alu 0 117 3 5 806 247 279 0 0 chr11 28998093 28998172 -92845684 + (TAGG)n Simple_repeat Simple_repeat 1 79 0 5 806 809 196 12 25 chr11 28998173 28998335 -92845521 + RMER15 LTR ERVL 415 574 -1 5 806 240 268 42 0 chr11 28998374 28998445 -92845411 - B4A SINE B4 -216 76 3 5 806 207 0 0 0 chr11 28999275 28999298 -92844558 + (A)n Simple_repeat Simple_repeat 1 23 0 5 806 385 335 111 67 chr11 28999651 28999707 -92844149 - LTR84b LTR ERVL -31 730 672 5 806 243 0 0 0 chr11 28999707 28999734 -92844122 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 806 385 335 111 67 chr11 28999734 28999975 -92843881 - LTR84b LTR ERVL -90 671 420 5 806 21589 130 15 10 chr11 29000253 29004990 -92838866 + L1_Mus4 LINE L1 1882 6630 -6 1 806 395 83 0 16 chr11 29004998 29005059 -92838797 + (GGA)n Simple_repeat Simple_repeat 2 61 0 2 806 719 52 0 0 chr11 29005232 29005328 -92838528 + L1_Mus4 LINE L1 5885 5980 -656 3 806 327 25 0 0 chr11 29005578 29005618 -92838238 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 806 535 242 39 45 chr11 29005872 29006028 -92837828 + RLTR11A2 LTR ERVK 2 156 -371 5 806 43238 16 8 0 chr11 29006176 29011261 -92832595 + MERVL-int LTR ERVL 248 5371 -114 6 806 371 111 26 53 chr11 29011261 29011337 -92832519 + ORR1A3-int LTR MaLR 567 640 -1323 7 806 302 0 0 0 chr11 29011337 29011375 -92832481 + MERVL-int LTR ERVL 5448 5485 0 6 806 4244 32 2 0 chr11 29011375 29011867 -92831989 + MT2_Mm LTR ERVL 1 493 0 6 806 16599 122 12 54 chr11 29011867 29013381 -92830475 + L1_Mus1 LINE L1 2945 4435 -1448 8 806 1077 81 0 51 chr11 29013381 29013537 -92830319 + B1_Mus1 SINE Alu 1 148 0 9 806 16599 102 17 39 chr11 29013537 29015771 -92828085 + L1_Mus1 LINE L1 4436 6567 0 8 806 16806 170 26 114 chr11 29015748 29020353 -92823503 + L1_Mur2 LINE L1 1205 5406 -471 1 806 5957 96 56 2 chr11 29020351 29021264 -92822592 + Lx LINE L1 5693 6654 0 1 806 3807 176 38 48 chr11 29021304 29022248 -92821608 + MYSERV6-int LTR ERVK 7855 8737 -222 1 806 1581 42 5 0 chr11 29022248 29022437 -92821419 + B2_Mm1t SINE B2 1 190 -3 1 806 3387 214 75 102 chr11 29022437 29022495 -92821361 + MYSERV6-int LTR ERVK 6310 6310 -240 1 806 1155 68 0 7 chr11 29022495 29022643 -92821213 + B1_Mus1 SINE Alu 1 147 -1 1 806 3387 214 75 102 chr11 29022643 29022890 -92820966 + MYSERV6-int LTR ERVK 6310 6550 0 1 806 375 358 7 0 chr11 29022953 29023090 -92820766 + CT-rich Low_complexity Low_complexity 4 141 0 1 806 272 260 143 68 chr11 29023196 29023357 -92820499 - MIR SINE MIR -85 177 5 1 806 180 324 88 0 chr11 29023528 29023596 -92820260 - L2c LINE L2 -341 3046 2973 1 806 428 268 0 0 chr11 29023863 29023975 -92819881 - RCHARR1 DNA MER1_type -34 940 829 1 806 31 26 0 0 chr11 29024373 29024411 -92819445 + AT_rich Low_complexity Low_complexity 1 38 0 1 806 2746 15 95 6 chr11 29024556 29024893 -92818963 + IAPLTR1_Mm LTR ERVK 1 367 0 2 806 7053 100 70 42 chr11 29024893 29026164 -92817692 + IAPEz-int LTR ERVK 8 1313 -5168 2 806 27530 20 1 2 chr11 29026163 29029440 -92814416 + IAPEz-int LTR ERVK 3210 6481 0 2 806 2746 15 95 6 chr11 29029440 29029777 -92814079 + IAPLTR1_Mm LTR ERVK 1 367 0 2 806 267 79 0 0 chr11 29029953 29029991 -92813865 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 806 277 312 0 0 chr11 29029991 29030084 -92813772 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 806 243 0 0 0 chr11 29030084 29030111 -92813745 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 806 672 260 44 76 chr11 29030122 29030347 -92813509 - B4A SINE B4 0 292 75 2 806 387 0 0 0 chr11 29030451 29030494 -92813362 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 806 22 0 0 0 chr11 29032488 29032510 -92811346 + AT_rich Low_complexity Low_complexity 1 22 0 2 806 1465 68 21 0 chr11 29033008 29033198 -92810658 - B2_Mm2 SINE B2 -1 194 1 2 806 548 225 70 62 chr11 29033564 29033692 -92810164 + B1_Mur1 SINE Alu 1 129 -20 2 806 252 77 0 0 chr11 29033699 29033738 -92810118 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 806 254 289 128 37 chr11 29034720 29034919 -92808937 + L2a LINE L2 3173 3422 -4 3 806 225 132 0 0 chr11 29035107 29035145 -92808711 + (TGG)n Simple_repeat Simple_repeat 1 38 0 3 806 912 64 72 0 chr11 29035831 29035956 -92807900 + B1_Mus2 SINE Alu 1 134 -13 3 806 1536 94 49 0 chr11 29035956 29036180 -92807676 + L1_Mus1 LINE L1 6333 6567 0 3 806 402 74 0 0 chr11 29036189 29036243 -92807613 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 3 806 376 274 44 59 chr11 29036366 29036502 -92807354 - B1F SINE Alu -15 134 1 3 806 24 0 0 0 chr11 29036886 29036910 -92806946 + AT_rich Low_complexity Low_complexity 1 24 0 3 806 230 286 0 0 chr11 29039372 29039449 -92804407 + Lx2 LINE L1 6910 6986 -11 3 806 293 274 0 0 chr11 29039522 29039595 -92804261 + ID4 SINE ID 5 77 -6 3 806 674 189 68 8 chr11 29040348 29040481 -92803375 + B1_Mur2 SINE Alu 1 141 -8 3 806 335 262 12 12 chr11 29040502 29040583 -92803273 + ID4_ SINE ID 3 83 0 4 806 248 290 150 24 chr11 29040601 29040728 -92803128 + MIR SINE MIR 118 260 -2 4 806 183 239 24 183 chr11 29041509 29041591 -92802265 - MER5A DNA MER1_type -87 102 34 4 806 275 167 33 0 chr11 29042032 29042092 -92801764 + CT-rich Low_complexity Low_complexity 4 65 0 4 806 216 0 0 0 chr11 29042110 29042134 -92801722 + (TTGTG)n Simple_repeat Simple_repeat 1 24 0 4 806 396 294 23 31 chr11 29042135 29042265 -92801591 - B1_Mur2 SINE Alu -11 138 10 4 806 358 238 148 0 chr11 29042377 29042478 -92801378 - B1F SINE Alu 0 149 34 4 806 377 194 14 0 chr11 29042576 29042648 -92801208 + ID4_ SINE ID 8 80 -3 4 806 241 248 99 34 chr11 29042648 29042679 -92801177 + B2_Mm2 SINE B2 2 109 -107 4 806 22 35 0 0 chr11 29042787 29042816 -92801040 + AT_rich Low_complexity Low_complexity 1 29 0 4 806 253 250 15 0 chr11 29044085 29044153 -92799703 - L1MEf LINE L1 -3950 2196 2128 5 806 449 278 210 15 chr11 29044200 29044467 -92799389 - L1MEf LINE L1 -4766 1476 1158 5 806 227 259 74 0 chr11 29044580 29044634 -92799222 - ID2 SINE ID -11 72 15 5 806 313 250 48 32 chr11 29045172 29045238 -92798618 + BC1_Mm scRNA scRNA 2 69 -83 5 806 288 0 0 0 chr11 29045238 29045270 -92798586 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 806 313 250 48 32 chr11 29045270 29045327 -92798529 + BC1_Mm scRNA scRNA 70 126 -26 5 806 208 253 0 39 chr11 29045504 29045582 -92798274 + T-rich Low_complexity Low_complexity 1 75 0 5 806 229 271 0 5 chr11 29045647 29045699 -92798157 - B1F SINE Alu -98 51 1 5 806 672 275 27 36 chr11 29046234 29046453 -92797403 + ID_B1 SINE B4 1 217 -7 5 806 372 271 10 30 chr11 29046547 29046646 -92797210 + PB1 SINE Alu 29 125 -2 5 806 357 218 0 11 chr11 29046874 29046962 -92796894 + B3 SINE B2 130 216 0 5 806 486 0 0 0 chr11 29047236 29047290 -92796566 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 806 605 284 81 61 chr11 29047884 29048131 -92795725 - B4A SINE B4 -39 253 2 6 806 207 259 123 153 chr11 29048460 29048688 -92795168 + L3 LINE CR1 2104 2324 -2165 6 806 384 82 0 0 chr11 29048855 29048916 -92794940 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 806 405 0 0 0 chr11 29048916 29048960 -92794896 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 806 206 315 137 0 chr11 29049205 29049278 -92794578 - L2a LINE L2 -1 3425 3343 6 806 479 256 33 0 chr11 29049351 29049456 -92794400 + PB1D9 SINE Alu 1 115 -5 6 806 405 202 62 12 chr11 29049505 29049585 -92794271 - PB1D10 SINE Alu -12 105 22 6 806 872 224 69 10 chr11 29049759 29049962 -92793894 + B3 SINE B2 2 216 0 6 806 239 274 0 52 chr11 29050372 29050449 -92793407 + B1_Mur1 SINE Alu 77 149 0 6 806 546 167 213 0 chr11 29050501 29050609 -92793247 - B1_Mur2 SINE Alu -14 135 5 6 806 838 284 15 10 chr11 29051145 29051348 -92792508 - B3 SINE B2 -11 205 2 7 806 804 223 4 19 chr11 29051374 29051530 -92792326 - ID_B1 SINE B4 -55 237 85 7 806 1231 246 72 17 chr11 29051604 29051951 -92791905 - ORR1D2 LTR MaLR 0 370 5 7 806 281 275 119 24 chr11 29051952 29052120 -92791736 + B2_Mm2 SINE B2 18 194 -1 7 806 645 201 125 0 chr11 29052359 29052503 -92791353 + B3 SINE B2 1 162 -54 7 806 416 164 14 0 chr11 29052477 29052550 -92791306 + PB1D9 SINE Alu 34 107 -13 7 806 343 328 0 49 chr11 29052568 29052690 -92791166 + PB1D10 SINE Alu 1 116 -1 7 806 228 195 48 219 chr11 29053396 29053501 -92790355 + B4 SINE B4 137 223 -69 7 806 341 247 189 11 chr11 29053414 29053504 -92790352 + B1F SINE Alu 44 149 0 7 806 204 97 0 0 chr11 29053506 29053537 -92790319 + (TAA)n Simple_repeat Simple_repeat 3 33 0 7 806 1051 196 8 76 chr11 29053563 29053801 -92790055 + URR1B DNA MER1_type 1 222 -3 8 806 253 343 0 0 chr11 29054463 29054533 -92789323 + ID4 SINE ID 12 81 -2 8 806 251 345 23 0 chr11 29054533 29054550 -92789306 + ID_B1 SINE B4 12 100 -124 8 806 423 308 43 49 chr11 29055057 29055221 -92788635 - RSINE1 SINE B4 0 165 3 8 806 1339 98 16 0 chr11 29055395 29055579 -92788277 - B2_Mm2 SINE B2 -7 188 2 8 806 589 181 116 16 chr11 29056161 29056290 -92787566 + B1_Mur2 SINE Alu 2 143 -6 8 806 180 306 0 0 chr11 29056572 29056621 -92787235 + L2a LINE L2 3346 3394 -32 8 806 479 298 44 132 chr11 29057198 29057275 -92786581 - ID_B1 SINE B4 -16 208 129 8 806 189 0 0 0 chr11 29057283 29057304 -92786552 + (TTA)n Simple_repeat Simple_repeat 1 21 0 8 806 1128 63 0 6 chr11 29057304 29057454 -92786402 - L1_Mus2 LINE L1 -9 6557 6409 8 806 725 263 68 10 chr11 29057457 29057649 -92786207 - B3 SINE B2 -12 204 2 9 806 479 298 44 132 chr11 29057649 29057672 -92786184 - ID_B1 SINE B4 -96 128 124 8 806 934 192 97 15 chr11 29057672 29057724 -92786132 - B3 SINE B2 -1 215 147 9 806 243 0 0 0 chr11 29057724 29057751 -92786105 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 806 960 14 0 75 chr11 29057751 29057910 -92785946 + (GA)n Simple_repeat Simple_repeat 1 148 0 9 806 934 192 97 15 chr11 29057910 29058052 -92785804 - B3 SINE B2 -70 146 5 9 806 479 298 44 132 chr11 29058052 29058174 -92785682 - ID_B1 SINE B4 -101 123 1 8 806 428 215 23 90 chr11 29058595 29058674 -92785182 + B3 SINE B2 90 165 -51 9 806 399 73 0 0 chr11 29058674 29058729 -92785127 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 806 428 215 23 90 chr11 29058729 29058782 -92785074 + B3 SINE B2 166 213 -3 9 806 248 229 139 28 chr11 29058889 29058961 -92784895 + ID4_ SINE ID 2 81 -2 9 806 731 164 63 21 chr11 29059064 29059207 -92784649 + B1_Mur3 SINE Alu 1 149 0 9 806 648 312 31 34 chr11 29059452 29059744 -92784112 - B4A SINE B4 0 292 2 9 806 1160 62 0 0 chr11 29059867 29060013 -92783843 + B1_Mm SINE Alu 1 146 -1 9 806 207 146 36 18 chr11 29060402 29060458 -92783398 + GA-rich Low_complexity Low_complexity 3 59 0 1 806 26 30 0 0 chr11 29061647 29061680 -92782176 + AT_rich Low_complexity Low_complexity 1 33 0 1 806 259 207 324 0 chr11 29062216 29062327 -92781529 - B1_Mur2 SINE Alu -2 147 1 1 806 361 299 53 1 chr11 29063067 29063167 -92780689 - RSINE1 SINE B4 -58 107 2 1 806 441 195 11 33 chr11 29063487 29063577 -92780279 - MTD LTR MaLR -170 249 162 1 806 434 276 17 8 chr11 29063540 29063657 -92780199 + MTD LTR MaLR 24 141 -278 1 806 180 0 0 0 chr11 29063861 29063881 -92779975 + (T)n Simple_repeat Simple_repeat 1 20 0 1 806 2184 117 66 87 chr11 29063887 29064372 -92779484 + IAPLTR2_Mm LTR ERVK 1 475 0 1 806 5579 68 12 19 chr11 29064401 29065152 -92778704 - IAPEz-int LTR ERVK 0 6481 5736 1 806 2217 68 0 0 chr11 29065151 29065429 -92778427 - IAPEz-int LTR ERVK -4845 1636 1359 1 806 3518 87 33 37 chr11 29065429 29066229 -92777627 - IAPEz-int LTR ERVK -5819 662 9 1 806 2297 92 182 0 chr11 29066230 29066632 -92777224 - IAPLTR2_Mm LTR ERVK 0 475 1 1 806 24 0 0 0 chr11 29066877 29066901 -92776955 + AT_rich Low_complexity Low_complexity 1 24 0 1 806 378 254 72 31 chr11 29066995 29067114 -92776742 - B1_Mus1 SINE Alu -10 138 19 1 806 362 328 176 15 chr11 29067145 29067281 -92776575 + RSINE1 SINE B4 2 159 -6 1 806 598 289 87 0 chr11 29067322 29067471 -92776385 + RSINE1 SINE B4 4 165 0 1 806 570 256 176 19 chr11 29067509 29067668 -92776188 + B4 SINE B4 58 241 -51 1 806 511 219 179 101 chr11 29068365 29068533 -92775323 + B3 SINE B2 2 182 -34 1 806 186 133 0 0 chr11 29068548 29068578 -92775278 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 806 1174 183 105 78 chr11 29069565 29069639 -92774217 + MT2A LTR ERVL 1 69 -464 1 806 1735 179 57 14 chr11 29069639 29069991 -92773865 + ORR1B2 LTR MaLR 1 367 0 1 806 1174 197 83 75 chr11 29069991 29070322 -92773534 + MT2A LTR ERVL 70 540 -61 1 806 423 0 0 0 chr11 29070322 29070369 -92773487 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 806 202 97 32 0 chr11 29070412 29070443 -92773413 + (CATA)n Simple_repeat Simple_repeat 4 35 0 1 806 264 255 0 0 chr11 29070550 29070601 -92773255 + RSINE1 SINE B4 29 79 -86 1 806 408 273 59 53 chr11 29070846 29071016 -92772840 + MER2B DNA MER2_type 165 335 -1 1 806 233 241 37 0 chr11 29071099 29071153 -92772703 - MER45A DNA Tip100 -56 122 67 1 806 24 53 0 0 chr11 29075740 29075778 -92768078 + AT_rich Low_complexity Low_complexity 1 38 0 1 806 499 187 18 18 chr11 29076561 29076670 -92767186 + PB1D9 SINE Alu 1 109 -11 1 806 269 183 0 16 chr11 29076730 29076791 -92767065 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 806 222 269 0 0 chr11 29078241 29078293 -92765563 + (CTA)n Simple_repeat Simple_repeat 2 53 0 1 806 21 0 0 0 chr11 29078400 29078421 -92765435 + AT_rich Low_complexity Low_complexity 1 21 0 1 806 761 206 0 0 chr11 29078553 29078684 -92765172 - B1_Mur2 SINE Alu -6 143 13 1 806 1519 42 11 11 chr11 29078757 29078947 -92764909 - B2_Mm1a SINE B2 -2 191 2 1 806 189 0 0 0 chr11 29079018 29079039 -92764817 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 806 786 134 194 0 chr11 29079438 29079572 -92764284 + U1 snRNA snRNA 5 164 -1 1 806 849 208 46 0 chr11 29079753 29079926 -92763930 - B3 SINE B2 -4 212 32 1 806 275 232 58 0 chr11 29080053 29080122 -92763734 - U3 snRNA snRNA -144 73 1 1 806 2356 190 65 52 chr11 29080417 29080938 -92762918 - ORR1D2-int LTR MaLR 0 1370 843 1 806 462 221 58 0 chr11 29080928 29081032 -92762824 + ORR1D1 LTR MaLR 265 374 0 1 806 1903 206 61 113 chr11 29081032 29081418 -92762438 - ORR1D2-int LTR MaLR -804 566 210 1 806 1156 62 7 0 chr11 29081418 29081564 -92762292 - B1_Mus1 SINE Alu 0 148 2 1 806 1903 206 61 113 chr11 29081564 29081769 -92762087 - ORR1D2-int LTR MaLR -1161 209 6 1 806 660 262 176 9 chr11 29081770 29082049 -92761807 - ORR1D2 LTR MaLR 0 374 44 1 806 379 257 185 12 chr11 29082843 29083016 -92760840 + ID_B1 SINE B4 3 205 -19 1 806 265 301 61 32 chr11 29083097 29083344 -92760512 - L1MC3 LINE L1 -113 7672 7419 1 806 298 342 55 10 chr11 29083394 29083521 -92760335 - PB1D7 SINE Alu -18 131 1 1 806 230 304 38 124 chr11 29083608 29083713 -92760143 + ID_B1 SINE B4 125 220 -4 1 806 218 77 26 0 chr11 29084441 29084456 -92759400 + (TA)n Simple_repeat Simple_repeat 1 15 0 1 806 216 0 0 0 chr11 29084456 29084480 -92759376 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 806 218 77 26 0 chr11 29084480 29084503 -92759353 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 806 595 261 50 25 chr11 29084567 29084728 -92759128 - RSINE1 SINE B4 0 165 1 1 806 2697 153 102 30 chr11 29084843 29085434 -92758422 - RMER6A LTR ERVK 0 756 73 1 806 1071 324 88 24 chr11 29085451 29085917 -92757939 - MER77 LTR ERVL -86 521 56 1 806 465 214 142 9 chr11 29085966 29086079 -92757777 + RSINE1 SINE B4 2 129 -36 1 806 738 218 74 5 chr11 29086125 29086314 -92757542 - B3 SINE B2 -13 203 2 1 806 304 279 51 0 chr11 29086429 29086508 -92757348 + RSINE1 SINE B4 14 96 -69 1 806 574 248 0 41 chr11 29086670 29086792 -92757064 + RSINE1 SINE B4 47 163 -2 1 806 727 226 15 0 chr11 29086848 29086985 -92756871 + B1_Mur4 SINE Alu 11 149 -1 1 806 478 245 38 0 chr11 29087037 29087143 -92756713 + PB1D9 SINE Alu 2 111 -9 1 806 258 261 204 0 chr11 29087437 29087525 -92756331 - MER21-int LTR ERV1 -144 4047 3942 1 806 333 285 40 87 chr11 29087594 29087744 -92756112 - B4 SINE B4 -148 144 2 1 806 333 314 38 0 chr11 29087744 29087844 -92756012 - PB1D10 SINE Alu -11 109 1 1 806 240 35 0 0 chr11 29088686 29088715 -92755141 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 806 326 250 59 92 chr11 29088728 29088753 -92755103 - PB1D10 SINE Alu 0 117 99 1 806 640 261 12 25 chr11 29088753 29088914 -92754942 - RSINE1 SINE B4 -6 159 1 1 806 326 250 59 92 chr11 29088914 29089007 -92754849 - PB1D10 SINE Alu -19 98 3 1 806 387 234 13 0 chr11 29089387 29089464 -92754392 + ID4_ SINE ID 5 82 -1 1 806 556 194 152 8 chr11 29089612 29089737 -92754119 - B1F1 SINE Alu -1 148 6 1 806 438 20 0 0 chr11 29089981 29090032 -92753824 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 806 1208 151 32 5 chr11 29090490 29090710 -92753146 - URR1A DNA MER1_type 0 226 1 1 806 767 189 0 34 chr11 29090807 29090955 -92752901 - B1_Mur4 SINE Alu -6 144 2 1 806 344 335 90 28 chr11 29091479 29091657 -92752199 - B3A SINE B2 0 216 28 1 806 187 225 75 0 chr11 29091668 29091708 -92752148 + MIR SINE MIR 41 83 -125 1 806 1152 242 83 19 chr11 29092655 29093214 -92750642 - RLTR12A LTR ERVK -4 564 47 1 806 1028 50 58 0 chr11 29093644 29093783 -92750073 + B1_Mus1 SINE Alu 2 148 0 1 806 21 36 0 0 chr11 29093797 29093825 -92750031 + AT_rich Low_complexity Low_complexity 1 28 0 1 806 285 29 0 0 chr11 29093851 29093885 -92749971 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 806 320 212 0 0 chr11 29093887 29093953 -92749903 + ID4 SINE ID 2 67 -16 1 806 228 67 0 0 chr11 29094183 29094213 -92749643 + (T)n Simple_repeat Simple_repeat 1 30 0 1 806 844 148 28 14 chr11 29095052 29095196 -92748660 + B1_Mus2 SINE Alu 2 147 0 1 806 22 0 0 0 chr11 29095197 29095219 -92748637 + AT_rich Low_complexity Low_complexity 1 22 0 1 806 1528 53 0 0 chr11 29095270 29095457 -92748399 - B2_Mm1t SINE B2 -5 188 2 1 806 252 200 0 0 chr11 29095675 29095735 -92748121 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 806 364 276 213 0 chr11 29095774 29095901 -92747955 - RSINE1 SINE B4 -11 154 1 1 806 334 125 0 0 chr11 29097511 29097559 -92746297 - B1_Mus2 SINE Alu -85 62 15 1 806 213 108 0 0 chr11 29097622 29097659 -92746197 + (T)n Simple_repeat Simple_repeat 1 37 0 1 806 387 337 0 0 chr11 29097745 29097840 -92746016 - B3A SINE B2 -58 140 46 1 806 306 250 67 39 chr11 29097835 29097939 -92745917 - PB1D10 SINE Alu -1 116 10 1 807 202 195 0 0 chr11 29098573 29098604 -92745252 + polypyrimidine Low_complexity Low_complexity 12 42 0 1 807 360 0 0 0 chr11 29098604 29098644 -92745212 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 807 242 294 129 100 chr11 29099135 29099275 -92744581 - RSINE1 SINE B4 -19 146 3 1 807 26 30 0 0 chr11 29099555 29099588 -92744268 + AT_rich Low_complexity Low_complexity 1 33 0 1 807 1165 86 121 0 chr11 29099649 29099823 -92744033 - B2_Mm2 SINE B2 0 195 1 1 807 408 20 0 0 chr11 29099968 29100017 -92743839 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 807 368 379 39 0 chr11 29100150 29100303 -92743553 + B3A SINE B2 5 163 -35 1 807 252 323 78 31 chr11 29101001 29101129 -92742727 - Tigger13a DNA MER2_type -215 556 423 1 807 341 277 108 8 chr11 29101191 29101311 -92742545 + ID_B1 SINE B4 84 215 -9 1 807 23 43 0 21 chr11 29101517 29101535 -92742321 + AT_rich Low_complexity Low_complexity 1 18 0 1 807 1214 48 0 0 chr11 29101535 29101681 -92742175 + B1_Mus1 SINE Alu 1 146 -2 1 807 23 43 0 21 chr11 29101681 29101710 -92742146 + AT_rich Low_complexity Low_complexity 1 29 0 1 807 604 202 0 9 chr11 29102555 29102670 -92741186 - B1_Mur2 SINE Alu -35 114 1 1 807 1137 82 0 0 chr11 29103220 29103366 -92740490 - B1_Mm SINE Alu 0 147 2 1 807 357 298 113 9 chr11 29103574 29103689 -92740167 + RSINE1 SINE B4 5 131 -34 1 807 443 262 72 52 chr11 29103728 29103921 -92739935 + B3A SINE B2 2 198 0 1 807 21 0 0 0 chr11 29103927 29103948 -92739908 + AT_rich Low_complexity Low_complexity 1 21 0 1 807 604 195 0 0 chr11 29103975 29104088 -92739768 + B3 SINE B2 1 113 -103 1 807 207 65 0 0 chr11 29104122 29104132 -92739724 + (TG)n Simple_repeat Simple_repeat 1 10 0 1 807 531 0 0 0 chr11 29104132 29104191 -92739665 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 807 207 65 0 0 chr11 29104191 29104211 -92739645 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 807 1183 59 99 12 chr11 29104370 29104542 -92739314 - B2_Mm2 SINE B2 -8 187 1 2 807 381 240 177 24 chr11 29104574 29104698 -92739158 + B3 SINE B2 38 180 -36 2 807 22 0 0 0 chr11 29105443 29105465 -92738391 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 238 235 72 14 chr11 29106045 29106114 -92737742 - ID_B1 SINE B4 -24 200 128 2 807 257 278 241 0 chr11 29106640 29106748 -92737108 - B1F SINE Alu -15 134 1 2 807 23 33 0 0 chr11 29106818 29106848 -92737008 + AT_rich Low_complexity Low_complexity 1 30 0 2 807 272 292 174 17 chr11 29106848 29106963 -92736893 - ID_B1 SINE B4 -6 218 86 2 807 747 250 144 42 chr11 29107118 29107381 -92736475 + B4 SINE B4 1 290 -2 2 807 22 0 0 0 chr11 29108124 29108146 -92735710 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 287 49 24 0 chr11 29108148 29108189 -92735667 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 807 432 0 0 0 chr11 29108189 29108236 -92735620 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 807 22 0 0 0 chr11 29108478 29108500 -92735356 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 867 49 35 7 chr11 29108708 29108853 -92735003 + RMER17B LTR ERVK 312 460 -498 2 807 346 226 147 64 chr11 29109059 29109168 -92734688 - RSINE1 SINE B4 -33 132 15 2 807 22 56 0 0 chr11 29109807 29109843 -92734013 + AT_rich Low_complexity Low_complexity 1 36 0 2 807 26 50 0 0 chr11 29110794 29110834 -92733022 + AT_rich Low_complexity Low_complexity 1 40 0 2 807 303 271 27 45 chr11 29112079 29112191 -92731665 - PB1D7 SINE Alu -9 111 2 2 807 290 281 51 26 chr11 29112431 29112548 -92731308 + PB1D7 SINE Alu 1 120 0 2 807 519 291 7 7 chr11 29112549 29112684 -92731172 + ID_B1 SINE B4 80 214 -10 2 807 233 167 177 32 chr11 29113007 29113069 -92730787 - ID4_ SINE ID -11 72 2 2 807 225 336 67 20 chr11 29113179 29113328 -92730528 + L3 LINE CR1 4041 4196 -293 2 807 216 320 25 37 chr11 29114628 29114709 -92729147 + PB1 SINE Alu 1 80 -47 2 807 717 200 223 0 chr11 29114781 29114956 -92728900 + B3 SINE B2 2 215 -1 2 807 23 0 0 0 chr11 29115189 29115212 -92728644 + AT_rich Low_complexity Low_complexity 1 23 0 2 807 1363 71 27 0 chr11 29115212 29115396 -92728460 + B2_Mm1a SINE B2 1 189 -4 2 807 304 152 58 92 chr11 29115484 29115571 -92728285 + L1M LINE L1 5327 5410 -770 2 807 463 266 104 55 chr11 29115594 29115757 -92728099 + B4A SINE B4 2 172 -120 2 807 235 296 0 120 chr11 29115767 29115867 -92727989 + RSINE1 SINE B4 78 165 0 2 807 259 285 89 63 chr11 29115884 29116101 -92727755 + L1M LINE L1 5433 5646 -538 2 807 356 222 94 48 chr11 29116101 29116237 -92727619 + PB1D10 SINE Alu 31 146 -3 2 807 276 164 29 15 chr11 29116254 29116322 -92727534 + L1M LINE L1 5706 5774 -404 2 807 906 83 177 49 chr11 29116587 29116751 -92727105 + B2_Mm2 SINE B2 1 185 -10 2 807 304 180 0 0 chr11 29120890 29120940 -92722916 + RSINE1 SINE B4 2 51 -114 2 807 186 347 56 0 chr11 29121392 29121464 -92722392 + L2a LINE L2 3313 3388 -38 2 807 23 33 0 0 chr11 29121527 29121557 -92722299 + AT_rich Low_complexity Low_complexity 1 30 0 2 807 216 259 37 0 chr11 29121557 29121611 -92722245 - PB1D9 SINE Alu 0 120 65 2 807 587 262 0 46 chr11 29121563 29121715 -92722141 - ID_B1 SINE B4 -6 218 74 2 807 21 36 0 0 chr11 29121828 29121856 -92722000 + AT_rich Low_complexity Low_complexity 1 28 0 2 807 330 26 0 0 chr11 29123437 29123476 -92720380 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 807 368 247 42 2 chr11 29123646 29123737 -92720119 + B4A SINE B4 185 280 -12 2 807 24 32 0 0 chr11 29123796 29123827 -92720029 + AT_rich Low_complexity Low_complexity 1 31 0 2 807 359 250 119 9 chr11 29124647 29124756 -92719100 - B1_Mur1 SINE Alu -28 121 1 2 807 281 288 0 14 chr11 29124757 29124831 -92719025 - ID_B1 SINE B4 -2 222 150 2 807 349 214 52 19 chr11 29125240 29125326 -92718530 + PB1D9 SINE Alu 1 84 -36 2 807 21 36 0 0 chr11 29125558 29125586 -92718270 + AT_rich Low_complexity Low_complexity 1 28 0 2 807 853 261 19 10 chr11 29126133 29126342 -92717514 - B3 SINE B2 -4 212 2 2 807 1074 52 22 0 chr11 29126614 29126750 -92717106 - B1_Mus2 SINE Alu -7 140 2 2 807 1364 171 135 38 chr11 29127437 29127778 -92716078 + ORR1D1 LTR MaLR 1 374 0 2 807 270 0 0 0 chr11 29127945 29127975 -92715881 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 807 1193 62 0 0 chr11 29127975 29128121 -92715735 - B1_Mus1 SINE Alu -2 146 1 2 807 630 195 35 0 chr11 29128176 29128289 -92715567 + PB1D9 SINE Alu 1 117 -3 2 807 1734 263 179 25 chr11 29128315 29128566 -92715290 + Lx8 LINE L1 6552 6846 -627 2 807 576 250 117 25 chr11 29128566 29128600 -92715256 - B3 SINE B2 0 216 183 2 807 648 86 0 0 chr11 29128600 29128705 -92715151 + (TATG)n Simple_repeat Simple_repeat 2 106 0 2 807 576 250 117 25 chr11 29128705 29128867 -92714989 - B3 SINE B2 -34 182 3 2 807 1734 263 179 25 chr11 29128867 29129414 -92714442 + Lx8 LINE L1 6847 7473 0 2 807 300 248 278 22 chr11 29129435 29129658 -92714198 + B4A SINE B4 2 281 -11 2 807 24 0 0 0 chr11 29129962 29129986 -92713870 + AT_rich Low_complexity Low_complexity 1 24 0 2 807 593 223 8 0 chr11 29130000 29130121 -92713735 - B1_Mur4 SINE Alu -28 122 1 2 807 258 219 125 0 chr11 29130927 29130991 -92712865 + ID4 SINE ID 11 82 -1 2 807 183 250 71 71 chr11 29131330 29131386 -92712470 - L2c LINE L2 -37 3350 3295 2 807 2274 112 139 3 chr11 29132542 29132909 -92710947 + MTC LTR MaLR 1 417 -4 2 807 276 308 26 0 chr11 29133693 29133771 -92710085 + MER5A DNA MER1_type 16 95 -94 2 807 1380 77 49 0 chr11 29134026 29134209 -92709647 - B2_Mm2 SINE B2 -2 193 2 2 807 335 307 9 56 chr11 29134640 29134747 -92709109 - PB1D10 SINE Alu -15 102 1 2 807 1150 166 54 0 chr11 29135110 29135315 -92708541 + B3 SINE B2 1 216 0 2 807 22 0 0 0 chr11 29135321 29135343 -92708513 + AT_rich Low_complexity Low_complexity 1 22 0 2 807 475 250 34 8 chr11 29135966 29136083 -92707773 - PB1D7 SINE Alu 0 120 1 2 807 279 320 88 7 chr11 29136448 29136596 -92707260 - MER104 DNA Tc2 -2 179 20 2 807 656 214 162 0 chr11 29136597 29136751 -92707105 + B3 SINE B2 1 179 -37 2 807 647 260 49 87 chr11 29136875 29137060 -92706796 - B3A SINE B2 -21 195 14 2 807 394 192 41 0 chr11 29137094 29137167 -92706689 + B1F SINE Alu 74 149 0 2 807 21 0 0 0 chr11 29137222 29137243 -92706613 + AT_rich Low_complexity Low_complexity 1 21 0 2 807 239 197 49 0 chr11 29137371 29137432 -92706424 + L1MC LINE L1 3322 3385 -2761 2 807 866 193 0 0 chr11 29137513 29137663 -92706193 + B1_Mur4 SINE Alu 1 150 0 2 807 257 221 15 0 chr11 29137669 29137737 -92706119 + GA-rich Low_complexity Low_complexity 2 70 0 2 807 850 244 110 71 chr11 29137740 29138139 -92705717 + L1MC LINE L1 3477 3917 -2229 2 807 882 157 36 51 chr11 29138139 29138334 -92705522 + B2_Mm2 SINE B2 4 195 0 2 807 850 244 110 71 chr11 29138334 29138454 -92705402 + L1MC LINE L1 3918 4016 -2130 2 807 636 287 23 46 chr11 29138460 29138635 -92705221 - B3A SINE B2 -16 200 30 2 807 408 269 56 56 chr11 29138630 29138648 -92705208 + B1F SINE Alu 9 73 -77 2 807 571 179 21 0 chr11 29138648 29138743 -92705113 + ID_B1 SINE B4 108 204 -20 2 807 408 269 56 56 chr11 29138743 29138759 -92705097 + B1F SINE Alu 74 140 -10 2 807 850 216 98 0 chr11 29138759 29138953 -92704903 + B3 SINE B2 1 213 -3 2 807 367 267 55 62 chr11 29138953 29138965 -92704891 + B1_Mur4 SINE Alu 141 150 0 2 807 2424 238 63 18 chr11 29138971 29139633 -92704223 - RCHARR1 DNA MER1_type -146 828 137 2 807 641 219 18 24 chr11 29139789 29139953 -92703903 + Lx6 LINE L1 7126 7288 -172 2 807 693 82 0 0 chr11 29139964 29140074 -92703782 + (CAGG)n Simple_repeat Simple_repeat 2 111 0 2 807 288 254 47 47 chr11 29140110 29140238 -92703618 + Lx7 LINE L1 7193 7320 -376 2 807 40 16 0 45 chr11 29140426 29140492 -92703364 + AT_rich Low_complexity Low_complexity 1 63 0 2 807 623 103 10 0 chr11 29140502 29140599 -92703257 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 2 807 260 186 0 17 chr11 29140591 29140651 -92703205 + GA-rich Low_complexity Low_complexity 4 62 0 2 807 234 215 15 0 chr11 29140786 29140851 -92703005 + L1MC3 LINE L1 7617 7682 -103 2 807 525 49 24 12 chr11 29140973 29141055 -92702801 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 807 210 71 0 0 chr11 29141249 29141277 -92702579 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 807 411 252 71 0 chr11 29141346 29141445 -92702411 + RSINE1 SINE B4 23 128 -37 2 807 336 48 0 0 chr11 29141499 29141541 -92702315 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 2 807 805 186 7 0 chr11 29141556 29141701 -92702155 - B1_Mus2 SINE Alu 0 147 2 2 807 328 244 38 105 chr11 29141582 29141715 -92702141 - MT2B LTR ERVL -323 278 155 2 807 279 0 0 0 chr11 29141730 29141761 -92702095 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 2 807 301 230 58 0 chr11 29142199 29142286 -92701570 - MamSINE1 SINE tRNA -196 94 3 2 807 217 319 28 0 chr11 29142334 29142406 -92701450 - MIRb SINE MIR -40 228 155 2 807 1958 88 60 75 chr11 29142553 29142885 -92700971 + ORR1A4 LTR MaLR 3 329 0 2 807 320 368 30 0 chr11 29143230 29143363 -92700493 + B1F SINE Alu 1 137 -12 2 807 288 0 0 0 chr11 29143369 29143401 -92700455 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 807 823 218 113 5 chr11 29143515 29143709 -92700147 + B3 SINE B2 2 216 0 2 807 797 260 20 0 chr11 29144640 29144844 -92699012 + B3 SINE B2 3 210 -6 3 807 792 197 14 0 chr11 29144919 29145066 -92698790 + B1_Mur1 SINE Alu 1 149 0 3 807 297 277 76 38 chr11 29145227 29145332 -92698524 - RSINE1 SINE B4 -55 110 2 3 807 194 301 269 0 chr11 29145356 29145449 -92698407 + L2c LINE L2 3227 3344 -43 3 807 198 0 0 0 chr11 29146397 29146419 -92697437 + (A)n Simple_repeat Simple_repeat 1 22 0 3 807 305 327 29 26 chr11 29147787 29147817 -92696039 + ID SINE ID 48 89 -203 3 807 411 268 20 20 chr11 29147817 29147916 -92695940 + PB1D9 SINE Alu 1 99 -21 3 807 348 280 65 20 chr11 29148100 29148131 -92695725 + CYRA11_Mm Unknown Y-chromosome 136 173 -444 3 807 835 138 105 0 chr11 29148131 29148283 -92695573 - URR1A DNA MER1_type 0 226 59 3 807 3831 148 122 64 chr11 29148472 29148763 -92695093 + RMER21A LTR ERV1 12 293 -654 3 807 571 13 26 0 chr11 29148763 29148839 -92695017 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 807 3831 172 108 67 chr11 29148839 29149514 -92694342 + RMER21A LTR ERV1 294 940 -7 3 807 1329 291 54 8 chr11 29149629 29149983 -92693873 + ORR1D2 LTR MaLR 1 370 0 3 807 316 296 83 0 chr11 29150943 29151051 -92692805 - PB1D10 SINE Alu 0 117 1 3 807 22 0 0 0 chr11 29151051 29151073 -92692783 + AT_rich Low_complexity Low_complexity 1 22 0 3 807 845 187 0 0 chr11 29151405 29151539 -92692317 + B1_Mur3 SINE Alu 3 136 -13 3 807 180 0 0 0 chr11 29151539 29151559 -92692297 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 807 6828 34 10 0 chr11 29151591 29152455 -92691401 - L1Md_F3 LINE L1 0 6584 5712 3 807 254 289 19 0 chr11 29152978 29153030 -92690826 - ID4_ SINE ID -29 54 2 3 807 22 0 0 0 chr11 29153393 29153415 -92690441 + AT_rich Low_complexity Low_complexity 1 22 0 3 807 1331 227 85 73 chr11 29154703 29154924 -92688932 + RMER1C Other Other 750 997 -345 3 807 243 0 0 0 chr11 29154924 29154951 -92688905 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 807 1331 222 89 76 chr11 29154951 29155008 -92688848 + RMER1C Other Other 998 1045 -297 3 807 1000 99 43 0 chr11 29155008 29155149 -92688707 + B1_Mus1 SINE Alu 1 147 -1 3 807 1331 222 89 76 chr11 29155149 29155353 -92688503 + RMER1C Other Other 1046 1226 -116 3 807 207 0 0 0 chr11 29155397 29155420 -92688436 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 807 2236 148 60 3 chr11 29155500 29155865 -92687991 - ORR1B1 LTR MaLR -8 386 1 3 807 385 278 110 8 chr11 29155942 29156069 -92687787 + RSINE1 SINE B4 5 144 -21 3 807 230 300 0 16 chr11 29156096 29156157 -92687699 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 807 768 225 201 9 chr11 29156430 29156654 -92687202 - MTEa LTR MaLR -4 375 109 3 807 489 137 25 12 chr11 29156731 29156836 -92687020 + RMER6A LTR ERVK 557 688 -2 3 807 883 143 28 7 chr11 29157043 29157184 -92686672 + B1_Mur4 SINE Alu 5 148 -2 3 807 663 228 45 65 chr11 29157903 29158157 -92685699 - ORR1D2 LTR MaLR 0 379 145 3 807 2770 163 118 4 chr11 29158157 29158680 -92685176 - Lx5 LINE L1 -40 7010 6428 3 807 307 228 60 129 chr11 29158703 29158847 -92685009 - RLTR15 LTR ERVK -110 249 107 3 807 6126 40 0 8 chr11 29158847 29159596 -92684260 - L1Md_F2 LINE L1 0 6582 5840 3 807 307 228 60 129 chr11 29159596 29159668 -92684188 - RLTR15 LTR ERVK -253 106 48 3 807 32683 58 1 0 chr11 29159726 29164866 -92678990 + L1Md_F2 LINE L1 444 5586 -297 3 807 8121 39 5 1 chr11 29164867 29165855 -92678001 + L1Md_F2 LINE L1 5588 6579 -3 3 807 1294 184 67 38 chr11 29165858 29166174 -92677682 + Lx5 LINE L1 5891 6215 -835 3 807 647 267 46 7 chr11 29166174 29166325 -92677531 - ORR1D2 LTR MaLR -191 179 23 3 807 638 295 27 0 chr11 29166479 29166662 -92677194 - MTEa LTR MaLR -174 205 18 3 807 336 306 47 110 chr11 29166975 29167053 -92676803 + MT2B LTR ERVL 87 152 -449 3 807 789 194 21 7 chr11 29167053 29167198 -92676658 + B1_Mus2 SINE Alu 1 147 0 3 807 690 227 175 6 chr11 29167349 29167526 -92676330 + B3 SINE B2 2 208 -8 3 807 1012 106 50 101 chr11 29168751 29168809 -92675047 - ORR1A3 LTR MaLR 0 326 286 3 807 1443 100 5 0 chr11 29168809 29168999 -92674857 - B2_Mm1t SINE B2 -2 191 1 3 807 1012 154 50 113 chr11 29168999 29169189 -92674667 - ORR1A3 LTR MaLR -50 320 138 3 807 1181 209 19 10 chr11 29170247 29170455 -92673401 - B3 SINE B2 -5 211 2 3 807 920 235 45 5 chr11 29170588 29170789 -92673067 + B3 SINE B2 1 209 -7 3 807 468 250 47 39 chr11 29170813 29170942 -92672914 + RSINE1 SINE B4 2 131 -34 3 807 3767 156 34 58 chr11 29170956 29171711 -92672145 + RLTR25B LTR ERVK 1 737 -291 3 807 798 326 133 58 chr11 29171788 29172410 -92671446 + RMER13A LTR ERVK 95 763 -97 3 807 594 165 74 43 chr11 29172387 29172587 -92671269 + RLTR25B LTR ERVK 890 1103 0 3 807 1489 81 0 16 chr11 29172665 29172854 -92671002 + B2_Mm2 SINE B2 1 186 -9 3 807 3272 73 13 0 chr11 29173032 29173427 -92670429 + MTB LTR MaLR 1 400 0 3 807 317 261 0 0 chr11 29174020 29174085 -92669771 + ID_B1 SINE B4 117 181 -43 3 807 330 222 71 36 chr11 29174110 29174194 -92669662 - B1F SINE Alu -1 148 62 3 807 243 290 130 0 chr11 29174442 29174511 -92669345 + B1_Mur2 SINE Alu 37 114 -35 3 807 1072 148 7 0 chr11 29175114 29175263 -92668593 + B1_Mur4 SINE Alu 1 150 0 3 807 3950 175 103 70 chr11 29175694 29175980 -92667876 + RMER19B LTR ERVK 8 241 -661 3 807 207 0 0 0 chr11 29175980 29176003 -92667853 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 807 3950 175 103 70 chr11 29176003 29176583 -92667273 + RMER19B LTR ERVK 242 901 -1 3 807 611 274 6 0 chr11 29176675 29176832 -92667024 - L1M2 LINE L1 -544 5756 5599 3 807 587 302 143 0 chr11 29176843 29177032 -92666824 - ID_B1 SINE B4 0 224 9 3 807 812 274 25 10 chr11 29177093 29177296 -92666560 - B3 SINE B2 -10 206 1 3 807 489 34 0 0 chr11 29177314 29177373 -92666483 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 807 423 219 70 47 chr11 29177380 29177509 -92666347 - B1F SINE Alu -17 132 1 3 807 282 314 49 0 chr11 29177623 29177725 -92666131 - RMER15 LTR ERVL -76 499 393 3 807 627 202 76 0 chr11 29178008 29178127 -92665729 + B1_Mur2 SINE Alu 15 142 -7 3 807 250 298 73 28 chr11 29178297 29178413 -92665443 - ORR1E LTR MaLR -206 153 29 3 807 241 185 15 15 chr11 29179153 29179219 -92664637 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 807 288 333 0 12 chr11 29179231 29179313 -92664543 - B4 SINE B4 -209 83 3 3 807 413 333 17 8 chr11 29179965 29180083 -92663773 + ID_B1 SINE B4 72 190 -34 3 807 3829 36 2 101 chr11 29180144 29180671 -92663185 + IAPLTR2_Mm LTR ERVK 1 475 0 3 807 1064 110 25 81 chr11 29180672 29180870 -92662986 + IAPEz-int LTR ERVK 9 195 -6286 3 807 228 321 0 0 chr11 29180870 29180923 -92662933 + RLTR27 LTR ERVK 223 275 -34 3 807 241 321 0 0 chr11 29180951 29181004 -92662852 + RLTR27 LTR ERVK 223 275 -34 3 807 4030 49 2 18 chr11 29181004 29181507 -92662349 + IAPEz-int LTR ERVK 168 662 -5819 3 807 2667 70 0 3 chr11 29181507 29181850 -92662006 + IAPEz-int LTR ERVK 1359 1700 -4781 3 807 6475 60 11 17 chr11 29181843 29182677 -92661179 + IAPEz-int LTR ERVK 5651 6479 -2 3 807 2566 43 111 3 chr11 29182679 29183031 -92660825 + IAPLTR2_Mm LTR ERVK 1 390 -85 3 807 262 26 0 0 chr11 29183033 29183071 -92660785 + IAPLTR2_Mm LTR ERVK 311 348 -127 3 807 4472 60 112 58 chr11 29183071 29183742 -92660114 - IAPEz-int LTR ERVK -5118 1363 657 3 807 413 333 17 8 chr11 29183989 29184107 -92659749 + ID_B1 SINE B4 72 190 -34 3 807 270 216 54 0 chr11 29184191 29184265 -92659591 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 3 807 1557 266 48 64 chr11 29184271 29184773 -92659083 + RMER19C LTR ERVK 90 583 -28 3 807 6421 54 49 2 chr11 29184773 29185574 -92658282 + L1_Mus1 LINE L1 5673 6510 -57 3 807 668 255 61 25 chr11 29185648 29185845 -92658011 + B3 SINE B2 1 204 -12 3 807 391 271 21 0 chr11 29185982 29186078 -92657778 - ID_B1 SINE B4 0 224 127 3 807 369 248 205 0 chr11 29185990 29186107 -92657749 - B1F SINE Alu -8 141 1 3 807 701 255 14 0 chr11 29186194 29186335 -92657521 - ID_B1 SINE B4 -81 143 1 3 807 250 263 52 17 chr11 29186289 29186347 -92657509 - ZP3AR Satellite Satellite -125 87 28 3 807 23 33 0 0 chr11 29186461 29186491 -92657365 + AT_rich Low_complexity Low_complexity 1 30 0 3 807 31 76 0 0 chr11 29186602 29186668 -92657188 + AT_rich Low_complexity Low_complexity 1 66 0 3 807 22783 182 58 27 chr11 29187415 29187915 -92655941 + Lx2B LINE L1 737 1255 -5729 3 807 1211 84 71 22 chr11 29187915 29188098 -92655758 + B2_Mm1t SINE B2 1 192 -1 3 807 22783 158 47 55 chr11 29188098 29190438 -92653418 + Lx2B LINE L1 1256 3458 -2428 3 807 8964 32 4 0 chr11 29190438 29191430 -92652426 + L1Md_F2 LINE L1 5587 6582 0 3 807 4360 84 21 4 chr11 29191434 29191997 -92651859 + L1_Mus3 LINE L1 6059 6631 -7 3 807 22783 163 50 72 chr11 29191997 29195066 -92648790 + Lx2B LINE L1 3459 6621 -379 3 807 279 0 0 0 chr11 29195066 29195097 -92648759 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 807 5909 177 56 121 chr11 29195097 29195226 -92648630 + Lx2B LINE L1 6622 6622 -378 3 807 1252 63 6 6 chr11 29195226 29195402 -92648454 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 3 807 986 0 0 9 chr11 29195406 29195521 -92648335 + (GAA)n Simple_repeat Simple_repeat 3 116 0 3 807 5909 177 56 121 chr11 29195521 29195846 -92648010 + Lx2B LINE L1 6622 6995 -5 3 807 233 55 91 0 chr11 29195847 29195902 -92647954 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 3 807 526 14 14 14 chr11 29195991 29196063 -92647793 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 3 807 448 189 25 0 chr11 29196068 29196190 -92647666 + (CATA)n Simple_repeat Simple_repeat 2 126 0 3 807 273 277 67 0 chr11 29196191 29196310 -92647546 + L1MC4 LINE L1 6624 6750 -1292 3 807 416 282 9 0 chr11 29196314 29196424 -92647432 + MER3 DNA MER1_type 98 208 -1 3 807 345 245 59 0 chr11 29196859 29196879 -92646977 + RMER4B LTR ERVK 1 20 -565 3 807 3917 68 0 0 chr11 29196879 29197338 -92646518 - L1_Mus1 LINE L1 0 6567 6109 3 807 345 245 59 0 chr11 29197338 29197419 -92646437 + RMER4B LTR ERVK 21 107 -478 3 807 637 220 124 36 chr11 29197455 29197648 -92646208 - B3 SINE B2 -6 210 1 3 807 372 224 117 45 chr11 29197746 29197913 -92645943 + RLTR41 LTR ERV1 1 186 -260 3 807 454 273 61 50 chr11 29198101 29198282 -92645574 + RLTR41 LTR ERV1 264 446 0 3 807 1161 167 156 13 chr11 29198284 29198515 -92645341 + RLTR41 LTR ERV1 183 446 0 3 807 205 182 0 0 chr11 29198602 29198646 -92645210 + T-rich Low_complexity Low_complexity 2 45 0 3 807 1288 48 0 0 chr11 29198646 29198793 -92645063 - B1_Mm SINE Alu 0 147 1 3 807 2148 115 82 175 chr11 29198874 29199348 -92644508 + RLTR23 LTR ERV1 1 430 0 4 807 489 335 0 25 chr11 29200033 29200195 -92643661 + RSINE1 SINE B4 2 159 -6 4 807 744 12 0 0 chr11 29200196 29200281 -92643575 + (GA)n Simple_repeat Simple_repeat 1 85 0 4 807 324 0 0 0 chr11 29200612 29200648 -92643208 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 807 472 265 86 48 chr11 29200648 29200858 -92642998 - Lx8 LINE L1 -155 7318 7101 4 807 225 286 16 0 chr11 29201330 29201393 -92642463 - LTR33B LTR ERVL -381 122 59 4 807 647 325 128 32 chr11 29202218 29202657 -92641199 + MLT1D LTR MaLR 25 505 0 4 807 308 103 17 0 chr11 29202837 29202895 -92640961 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 807 566 209 122 25 chr11 29203236 29203354 -92640502 - Lx7 LINE L1 -10 7686 7558 4 807 198 103 0 0 chr11 29203354 29203383 -92640473 + (TAG)n Simple_repeat Simple_repeat 1 29 0 4 807 664 203 300 8 chr11 29203383 29203507 -92640349 - Lx7 LINE L1 -139 7557 7398 4 807 1132 73 0 0 chr11 29203507 29203643 -92640213 + B1_Mus1 SINE Alu 2 137 -11 4 807 282 29 0 0 chr11 29203643 29203678 -92640178 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 807 664 202 312 7 chr11 29203678 29203839 -92640017 - Lx7 LINE L1 -299 7397 7161 4 807 1783 170 28 77 chr11 29203840 29204202 -92639654 + ORR1B1 LTR MaLR 1 347 -47 4 807 702 12 0 0 chr11 29204202 29204285 -92639571 + L1Md_T LINE L1 6500 6582 0 4 807 1783 170 28 77 chr11 29204285 29204311 -92639545 + ORR1B1 LTR MaLR 348 370 -24 4 807 4205 146 12 1 chr11 29204312 29204985 -92638871 - Lx2 LINE L1 -42 5841 5162 4 807 5784 108 38 19 chr11 29204984 29205887 -92637969 + Lx2 LINE L1 5845 6764 -233 4 807 973 120 0 0 chr11 29205892 29206034 -92637822 - L1_Mur1 LINE L1 -1501 4385 4244 4 807 9130 106 10 5 chr11 29206013 29207676 -92636180 - L1VL4 LINE L1 -1347 2212 541 4 807 1860 169 26 23 chr11 29207663 29208071 -92635785 - L1Md_F LINE L1 -6061 928 566 4 807 5018 60 17 46 chr11 29208244 29208894 -92634962 + L1_Mus2 LINE L1 5936 6566 0 4 807 760 254 86 25 chr11 29209000 29209198 -92634658 - B3 SINE B2 -5 211 2 4 807 382 336 39 70 chr11 29209225 29209481 -92634375 - RLTR42-int LTR ERVK -4122 1400 1153 4 807 248 243 81 0 chr11 29209491 29209565 -92634291 + L1M1 LINE L1 5801 5880 -420 4 807 490 250 100 0 chr11 29209621 29209741 -92634115 + ID_B1 SINE B4 84 215 -9 4 807 265 250 54 0 chr11 29209694 29209750 -92634106 + PB1D10 SINE Alu 59 117 0 4 807 261 0 0 0 chr11 29209761 29209790 -92634066 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 807 349 268 69 23 chr11 29209790 29209920 -92633936 + L1MA6 LINE L1 5966 6101 -199 4 807 3172 68 45 7 chr11 29209968 29210386 -92633470 - L1_Mus2 LINE L1 0 6566 6133 4 807 1356 202 127 35 chr11 29210664 29211003 -92632853 + ORR1D2 LTR MaLR 1 370 0 4 807 827 285 77 56 chr11 29211049 29211335 -92632521 + B4 SINE B4 1 292 0 4 807 268 221 89 25 chr11 29211362 29211441 -92632415 + MLT1A1 LTR MaLR 321 404 -4 4 807 198 305 228 20 chr11 29211446 29211744 -92632112 + L2 LINE L2 1732 2091 -1328 4 807 555 263 44 33 chr11 29211748 29211929 -92631927 + ORR1A4 LTR MaLR 9 191 -168 4 807 621 115 0 0 chr11 29211931 29212027 -92631829 + (TCCC)n Simple_repeat Simple_repeat 2 97 0 4 807 355 310 69 23 chr11 29212032 29212183 -92631673 + ORR1A4 LTR MaLR 149 307 -63 4 807 372 123 18 0 chr11 29212183 29212240 -92631616 + ORR1A4 LTR MaLR 1 58 -336 4 807 1455 203 5 69 chr11 29212371 29212764 -92631092 + ORR1A4 LTR MaLR 31 370 0 4 807 322 333 65 74 chr11 29213491 29213708 -92630148 + LTR16A LTR ERVL 133 347 -104 4 807 3686 74 22 0 chr11 29214060 29214521 -92629335 + Lx3_Mus LINE L1 6539 7009 0 4 807 205 333 0 0 chr11 29214889 29214943 -92628913 - MIRm SINE MIR 0 276 223 4 807 235 0 0 54 chr11 29215147 29215184 -92628672 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 807 803 71 54 0 chr11 29215184 29215296 -92628560 - MusHAL1 LINE L1 -366 2346 2229 4 807 646 237 244 17 chr11 29215661 29215837 -92628019 - B3 SINE B2 0 216 1 4 807 593 344 50 11 chr11 29215908 29216187 -92627669 - B4A SINE B4 -2 290 1 4 807 1212 64 0 0 chr11 29216322 29216463 -92627393 + B1_Mus2 SINE Alu 1 141 -6 4 807 204 158 0 0 chr11 29216590 29216628 -92627228 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 807 501 279 152 9 chr11 29216659 29216876 -92626980 - Lx8 LINE L1 -2 7471 7224 4 807 1003 229 30 45 chr11 29216881 29217214 -92626642 + RLTR15 LTR ERVK 1 328 -31 4 807 742 222 62 11 chr11 29217298 29217476 -92626380 - Lx8 LINE L1 -510 6963 6777 4 807 225 222 18 18 chr11 29217476 29217531 -92626325 - MTD LTR MaLR -196 223 169 4 807 831 240 11 11 chr11 29217553 29217738 -92626118 - Lx8 LINE L1 -708 6765 6581 4 807 354 284 168 7 chr11 29217776 29218063 -92625793 - MLT1B LTR MaLR 0 390 1 4 807 1886 202 85 5 chr11 29218139 29218527 -92625329 + MTD LTR MaLR 1 419 0 4 807 1435 129 90 83 chr11 29218818 29219096 -92624760 + ORR1A3 LTR MaLR 3 282 -44 4 807 4568 81 6 45 chr11 29219096 29219718 -92624138 + L1Md_F2 LINE L1 5985 6582 0 4 807 515 318 5 15 chr11 29219719 29219920 -92623936 + L1M2 LINE L1 5363 5561 -736 4 807 401 133 0 15 chr11 29219971 29220043 -92623813 + ORR1A4 LTR MaLR 274 329 0 4 807 971 262 14 14 chr11 29220560 29220773 -92623083 - B3 SINE B2 -1 215 3 4 807 464 284 184 11 chr11 29221315 29221500 -92622356 + L1MD3 LINE L1 7730 7946 -49 4 807 228 354 39 23 chr11 29222571 29222701 -92621155 + MLT1J-int LTR MaLR 645 776 -611 4 807 512 252 9 0 chr11 29223099 29223206 -92620650 + PB1D7 SINE Alu 13 120 0 4 807 1078 179 118 64 chr11 29223269 29223577 -92620279 - IAPEY3_LTR LTR ERVK -2 388 1 4 807 831 93 0 0 chr11 29223589 29223707 -92620149 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 4 807 4118 137 22 19 chr11 29223714 29224356 -92619500 - Lx2 LINE L1 0 6997 6354 4 807 7256 142 96 7 chr11 29224358 29225875 -92617981 - Lx2 LINE L1 0 6997 5357 4 100 39953 34 0 0 chr11 29225890 29231303 -92612553 - L1Md_T LINE L1 0 6582 1170 4 808 5660 167 21 27 chr11 29231309 29232622 -92611234 - L1Md_T LINE L1 -5411 1205 99 4 808 1274 121 0 0 chr11 29232625 29232815 -92611041 - L1_Mur2 LINE L1 -514 5363 5174 4 808 301 343 159 37 chr11 29232879 29233200 -92610656 + MLT1K LTR MaLR 146 505 -90 4 808 258 266 16 0 chr11 29233208 29233272 -92610584 + CT-rich Low_complexity Low_complexity 1 65 0 4 808 998 163 0 13 chr11 29234528 29234677 -92609179 - B1_Mus1 SINE Alu -1 147 1 4 808 287 211 57 81 chr11 29234701 29234825 -92609031 - Lx4B LINE L1 -6 7052 6932 4 808 22 56 0 0 chr11 29235345 29235381 -92608475 + AT_rich Low_complexity Low_complexity 1 36 0 4 808 542 256 134 109 chr11 29235418 29235777 -92608079 - RLTR9A LTR ERVK 0 368 1 4 808 748 212 22 0 chr11 29235862 29235999 -92607857 + B1_Mur2 SINE Alu 2 141 -8 4 808 279 0 0 0 chr11 29236000 29236031 -92607825 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 808 257 200 0 30 chr11 29236031 29236098 -92607758 + (TATG)n Simple_repeat Simple_repeat 4 68 0 4 808 8747 93 24 0 chr11 29236182 29238100 -92605756 - L1_Mus1 LINE L1 -1 6566 4598 4 808 8637 32 5 1 chr11 29238093 29239481 -92604375 - L1Md_F3 LINE L1 -3 6581 5189 4 808 543 277 147 78 chr11 29240803 29241199 -92602657 - L1M4 LINE L1 -859 5287 4865 4 808 340 347 20 0 chr11 29241214 29241312 -92602544 + RSINE1 SINE B4 2 101 -64 4 808 1779 230 116 11 chr11 29241313 29241762 -92602094 + RLTR16 LTR ERVK 1 496 -9 4 808 228 130 0 0 chr11 29242107 29242153 -92601703 + (TCTCTG)n Simple_repeat Simple_repeat 1 46 0 4 808 479 252 174 7 chr11 29242154 29242298 -92601558 - ID_B1 SINE B4 -52 172 5 4 808 250 325 128 52 chr11 29242640 29242812 -92601044 + MER5A DNA MER1_type 5 189 0 4 808 180 315 129 11 chr11 29243142 29243235 -92600621 - MER5B DNA MER1_type 0 178 75 4 808 213 39 0 0 chr11 29243246 29243272 -92600584 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 808 2314 199 59 33 chr11 29243272 29243760 -92600096 - Lx5 LINE L1 0 7050 6550 4 808 527 296 86 0 chr11 29243770 29243932 -92599924 - MER5A DNA MER1_type -6 183 8 4 808 2148 146 92 0 chr11 29243989 29244346 -92599510 + ORR1B1 LTR MaLR 1 390 -4 4 808 5852 135 32 11 chr11 29245534 29246418 -92597438 - RMER19B LTR ERVK 0 902 1 4 808 1335 148 118 84 chr11 29246435 29246736 -92597120 - RLTR15 LTR ERVK 0 359 39 4 808 2367 97 3 22 chr11 29246736 29247053 -92596803 - L1_Mus2 LINE L1 0 6566 6256 4 808 1335 148 118 84 chr11 29247053 29247098 -92596758 - RLTR15 LTR ERVK -321 38 1 4 808 547 304 14 37 chr11 29247131 29247346 -92596510 + L1MA4 LINE L1 6081 6290 -10 4 808 361 399 55 28 chr11 29247347 29247708 -92596148 - LTR82B Low_complexity ERVL -132 698 328 4 808 357 290 101 25 chr11 29247744 29247903 -92595953 - LTR82B Low_complexity ERVL -604 226 56 4 808 548 157 0 24 chr11 29247907 29248031 -92595825 + (CA)n Simple_repeat Simple_repeat 2 122 0 4 808 257 247 141 0 chr11 29248659 29248744 -92595112 + U6 snRNA snRNA 3 99 -8 4 808 309 305 113 15 chr11 29248752 29248885 -92594971 - B1F SINE Alu -1 148 3 4 808 1555 63 0 16 chr11 29248947 29249141 -92594715 + B2_Mm2 SINE B2 1 191 -4 4 808 231 222 68 14 chr11 29249167 29249240 -92594616 + L1MA9 LINE L1 6217 6293 -19 4 808 616 280 26 60 chr11 29249761 29249993 -92593863 + B4A SINE B4 69 292 0 4 808 216 0 0 0 chr11 29249993 29250017 -92593839 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 808 549 133 13 26 chr11 29250020 29250174 -92593682 + (CAGAGA)n Simple_repeat Simple_repeat 4 155 0 4 808 281 26 0 26 chr11 29250619 29250658 -92593198 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 808 690 149 211 0 chr11 29250658 29250772 -92593084 - B1_Mus1 SINE Alu -9 139 2 4 808 1398 226 58 39 chr11 29251345 29251704 -92592152 - ORR1D2 LTR MaLR 0 370 5 4 808 317 210 0 0 chr11 29251813 29251875 -92591981 + B3 SINE B2 155 216 0 5 808 235 347 48 21 chr11 29252692 29252832 -92591024 + MIR SINE MIR 41 196 -80 5 808 453 250 152 86 chr11 29252844 29252855 -92591001 - B3 SINE B2 -5 211 202 5 808 479 17 17 0 chr11 29252855 29252915 -92590941 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 808 492 250 152 86 chr11 29252915 29253100 -92590756 - B3A SINE B2 -15 201 2 5 808 822 284 39 26 chr11 29253260 29253491 -92590365 + ORR1E LTR MaLR 1 234 -125 5 808 546 286 115 31 chr11 29253641 29253998 -92589858 + L1MC4a LINE L1 7448 7834 -48 5 808 907 150 20 0 chr11 29255398 29255551 -92588305 - RLTR9A LTR ERVK 0 368 213 5 808 213 39 0 0 chr11 29255587 29255613 -92588243 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 808 1243 44 0 0 chr11 29255613 29255750 -92588106 - B1_Mus1 SINE Alu -10 138 2 5 808 292 263 143 31 chr11 29255858 29255956 -92587900 + MLT1A0 LTR MaLR 40 148 -217 5 808 253 280 46 43 chr11 29256114 29256237 -92587619 + MLT1A0 LTR MaLR 275 465 -2 5 808 204 219 0 24 chr11 29256276 29256318 -92587538 + polypyrimidine Low_complexity Low_complexity 2 42 0 5 808 2012 146 67 18 chr11 29256340 29256375 -92587481 - ORR1B2 LTR MaLR -8 359 330 5 808 3622 18 21 0 chr11 29256375 29256763 -92587093 + MTA_Mm LTR MaLR 1 396 0 5 808 2012 146 67 18 chr11 29256763 29257069 -92586787 - ORR1B2 LTR MaLR -38 329 1 5 808 405 311 20 30 chr11 29257069 29257268 -92586588 - L1MC4a LINE L1 -1924 5958 5762 5 808 1034 195 186 7 chr11 29257345 29257614 -92586242 - ORR1D1 LTR MaLR 0 374 58 5 808 431 281 132 12 chr11 29257617 29257866 -92585990 - L1MC4a LINE L1 -529 5644 5366 5 808 852 224 72 5 chr11 29257866 29258059 -92585797 + RMER20A LTR ERVK 1 206 -310 5 808 318 202 83 68 chr11 29258068 29258091 -92585765 - L1MC4a LINE L1 -2630 3516 3495 5 808 2313 128 146 24 chr11 29258091 29258474 -92585382 - RLTR23 LTR ERV1 0 430 1 5 808 549 243 32 71 chr11 29258484 29258639 -92585217 - B1F SINE Alu 0 149 1 5 808 318 202 83 68 chr11 29258639 29258737 -92585119 - L1MC4a LINE L1 -2659 3487 3382 5 808 734 233 24 81 chr11 29258771 29258981 -92584875 + B3A SINE B2 1 198 0 5 808 329 146 0 0 chr11 29259021 29259069 -92584787 - B3 SINE B2 -166 50 3 5 808 237 222 0 100 chr11 29259134 29259204 -92584652 - MT2B2 LTR ERVL -346 238 176 5 808 399 21 0 0 chr11 29260427 29260475 -92583381 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 808 938 251 0 39 chr11 29260959 29261166 -92582690 + B3 SINE B2 2 200 -16 5 808 1212 75 0 0 chr11 29261180 29261327 -92582529 - B1_Mus1 SINE Alu 0 148 2 5 808 300 296 23 122 chr11 29261692 29261711 -92582145 + MT2B LTR ERVL 147 152 -449 5 808 683 200 24 8 chr11 29261711 29261837 -92582019 + B1_Mur1 SINE Alu 1 128 -21 5 808 288 0 0 0 chr11 29261840 29261872 -92581984 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5 808 1237 168 19 23 chr11 29262011 29262225 -92581631 + B3 SINE B2 2 214 -2 5 808 1259 68 0 0 chr11 29262397 29262543 -92581313 - B1_Mus1 SINE Alu 0 148 3 5 808 3146 126 79 15 chr11 29262946 29263415 -92580441 - RLTR19 LTR ERVK 0 499 1 5 808 324 297 55 46 chr11 29263588 29263839 -92580017 + MTEb LTR MaLR 78 366 -13 5 808 2801 129 39 37 chr11 29263984 29264442 -92579414 + RMER6B LTR ERVK 1 459 -2 5 808 399 225 67 0 chr11 29264682 29264771 -92579085 + MER58B DNA MER1_type 247 341 0 5 808 573 285 54 20 chr11 29265039 29265186 -92578670 + RSINE1 SINE B4 5 156 -9 5 808 2734 160 368 0 chr11 29265554 29266223 -92577633 + RMER1B Other Other 152 1066 0 5 808 1229 68 0 7 chr11 29266430 29266577 -92577279 - B1_Mus2 SINE Alu -1 146 1 5 808 225 128 0 0 chr11 29266752 29266799 -92577057 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 808 409 254 295 7 chr11 29266803 29266942 -92576914 - B3A SINE B2 -18 180 2 5 808 796 188 20 34 chr11 29267050 29267199 -92576657 + B1_Mur1 SINE Alu 2 148 -1 5 808 1169 55 0 9 chr11 29267239 29267458 -92576398 + (TTCTC)n Simple_repeat Simple_repeat 1 217 0 5 808 615 185 13 7 chr11 29267461 29267613 -92576243 + C-rich Low_complexity Low_complexity 4 156 0 5 808 370 253 23 0 chr11 29267613 29267700 -92576156 + CT-rich Low_complexity Low_complexity 3 91 0 5 808 910 246 33 28 chr11 29267703 29267916 -92575940 + B3 SINE B2 1 214 -2 5 808 499 299 17 0 chr11 29268355 29268472 -92575384 + RSINE1 SINE B4 3 121 -44 5 808 360 0 0 0 chr11 29268473 29268513 -92575343 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 808 860 151 48 48 chr11 29268560 29268706 -92575150 - B1_Mur1 SINE Alu 0 149 4 5 808 288 0 0 0 chr11 29268721 29268753 -92575103 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 808 1522 173 105 81 chr11 29268760 29269094 -92574762 + ORR1B1 LTR MaLR 53 394 0 5 808 276 246 0 0 chr11 29269557 29269614 -92574242 - MIRm SINE MIR -122 154 98 5 808 210 208 20 20 chr11 29269743 29269792 -92574064 + CT-rich Low_complexity Low_complexity 2 50 0 5 808 281 48 48 0 chr11 29269797 29269839 -92574017 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 5 808 279 353 15 13 chr11 29269917 29270005 -92573851 - PB1 SINE Alu -49 78 1 5 808 828 281 50 48 chr11 29270062 29270449 -92573407 - L1MB8 LINE L1 -2 6176 5793 5 808 825 87 0 0 chr11 29271189 29271304 -92572552 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 5 808 198 0 0 0 chr11 29271305 29271327 -92572529 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 808 203 250 0 0 chr11 29272050 29272098 -92571758 - MIR SINE MIR -143 119 72 5 808 950 85 52 44 chr11 29272154 29272289 -92571567 + B1_Mus2 SINE Alu 2 137 -10 5 808 237 65 0 0 chr11 29272289 29272320 -92571536 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 808 987 230 29 5 chr11 29272393 29272603 -92571253 + B3 SINE B2 2 216 0 5 808 242 79 47 16 chr11 29273022 29273086 -92570770 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 808 29 0 0 0 chr11 29273466 29273495 -92570361 + GC_rich Low_complexity Low_complexity 1 29 0 5 808 1374 207 78 35 chr11 29275621 29276021 -92567835 + MTD LTR MaLR 3 419 0 5 808 337 228 105 0 chr11 29276524 29276638 -92567218 + Lx6 LINE L1 7309 7434 -26 5 808 1107 29 7 0 chr11 29277026 29277163 -92566693 - B1_Mm SINE Alu 0 147 10 5 808 2934 171 31 30 chr11 29277163 29277740 -92566116 - Lx LINE L1 -35 6619 6042 5 808 240 296 19 0 chr11 29278159 29278213 -92565643 + tRNA-Gly-GGG tRNA tRNA 7 61 -13 5 808 2043 241 60 21 chr11 29278925 29279754 -92564102 - RCHARR1 DNA MER1_type -8 966 3 5 808 766 267 40 4 chr11 29279755 29279981 -92563875 + L1MC LINE L1 5565 5798 -546 5 808 1779 194 69 37 chr11 29280267 29280767 -92563089 - RMER4B LTR ERVK -18 567 17 5 808 1839 149 73 57 chr11 29282083 29282454 -92561402 - ORR1C1 LTR MaLR 0 378 2 5 808 397 323 0 86 chr11 29282673 29282812 -92561044 - RSINE1 SINE B4 -36 129 3 5 808 553 254 58 0 chr11 29283020 29283158 -92560698 - B1F1 SINE Alu -2 147 2 5 808 255 229 0 20 chr11 29283387 29283436 -92560420 - B4A SINE B4 -164 128 81 5 808 237 296 72 24 chr11 29283435 29283518 -92560338 - 4.5SRNA scRNA scRNA -1 93 7 5 808 225 0 0 0 chr11 29283520 29283545 -92560311 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 808 2845 137 131 2 chr11 29283555 29284073 -92559783 + RMER4B LTR ERVK 1 585 0 5 808 2655 98 50 8 chr11 29284121 29284523 -92559333 - MT2B2 LTR ERVL -59 525 107 5 808 972 287 94 67 chr11 29284571 29284771 -92559085 + Charlie1 DNA MER1_type 1433 1649 -1132 5 808 511 298 14 21 chr11 29284771 29284915 -92558941 - B1F SINE Alu -5 144 2 5 808 972 287 94 67 chr11 29284915 29284950 -92558906 + Charlie1 DNA MER1_type 1650 1666 -1115 5 808 605 258 86 27 chr11 29284950 29285137 -92558719 - B3A SINE B2 0 198 1 5 808 972 287 94 67 chr11 29285137 29285408 -92558448 + Charlie1 DNA MER1_type 1667 1954 -827 5 808 540 242 126 13 chr11 29285466 29285625 -92558231 - B3 SINE B2 -1 215 39 5 808 233 213 12 62 chr11 29285621 29285701 -92558155 + Charlie1 DNA MER1_type 2059 2134 -647 5 808 286 302 104 0 chr11 29285701 29285807 -92558049 - PB1D10 SINE Alu 0 117 1 5 808 277 275 25 0 chr11 29285888 29285968 -92557888 + CT-rich Low_complexity Low_complexity 3 84 0 5 808 1033 246 67 30 chr11 29285982 29286343 -92557513 + Charlie1 DNA MER1_type 2196 2569 -212 5 808 254 74 19 0 chr11 29286344 29286398 -92557458 + L1_Mus4 LINE L1 6582 6636 0 5 808 189 107 0 0 chr11 29286425 29286453 -92557403 + (A)n Simple_repeat Simple_repeat 1 28 0 5 808 26 0 0 0 chr11 29286900 29286926 -92556930 + AT_rich Low_complexity Low_complexity 1 26 0 5 808 248 231 15 15 chr11 29287401 29287467 -92556389 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 808 28 29 0 0 chr11 29288926 29288961 -92554895 + AT_rich Low_complexity Low_complexity 1 35 0 5 808 457 238 108 23 chr11 29290304 29290319 -92553537 + ID_B1 SINE B4 80 93 -131 5 808 435 38 0 0 chr11 29290319 29290372 -92553484 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 808 457 238 108 23 chr11 29290372 29290485 -92553371 + ID_B1 SINE B4 94 219 -5 5 808 615 317 110 45 chr11 29291498 29291835 -92552021 - ORR1E LTR MaLR 0 359 1 5 808 309 215 284 30 chr11 29291835 29291943 -92551913 - ORR1E-int LTR MaLR -53 1527 1386 5 808 1051 51 0 21 chr11 29292272 29292413 -92551443 - B1_Mus1 SINE Alu 0 148 11 5 808 734 258 12 6 chr11 29292701 29292861 -92550995 - B3 SINE B2 -51 165 5 5 808 805 189 13 20 chr11 29293093 29293244 -92550612 + B1_Mur4 SINE Alu 1 150 0 5 808 426 247 224 0 chr11 29294048 29294222 -92549634 - B3 SINE B2 -2 214 2 5 808 358 220 67 22 chr11 29294222 29294357 -92549499 - L1_Mur3 LINE L1 -423 5457 5317 5 808 23 33 0 0 chr11 29294387 29294417 -92549439 + AT_rich Low_complexity Low_complexity 1 30 0 5 808 440 279 67 73 chr11 29294421 29294461 -92549395 - B2_Mm2 SINE B2 -18 177 137 5 808 441 0 0 0 chr11 29294461 29294510 -92549346 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 808 634 250 1 52 chr11 29294510 29294647 -92549209 - B3A SINE B2 -59 136 1 5 808 349 207 80 9 chr11 29294720 29294832 -92549024 - Lx6 LINE L1 -8 7452 7333 5 808 576 261 137 18 chr11 29294818 29294926 -92548930 - L1_Mur3 LINE L1 -2020 3860 3743 5 808 439 209 139 28 chr11 29294926 29295034 -92548822 - PB1D9 SINE Alu 0 120 1 5 808 576 261 137 18 chr11 29295034 29295157 -92548699 - L1_Mur3 LINE L1 -2138 3742 3602 5 808 3637 147 50 52 chr11 29295157 29295398 -92548458 - RMER6A LTR ERVK 0 756 518 6 808 495 0 0 0 chr11 29295398 29295453 -92548403 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6 808 3637 147 50 52 chr11 29295453 29295589 -92548267 - RMER6A LTR ERVK -239 517 384 6 808 222 37 0 0 chr11 29295589 29295616 -92548240 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 808 3637 147 50 52 chr11 29295616 29295992 -92547864 - RMER6A LTR ERVK -373 383 5 6 808 576 261 137 18 chr11 29295992 29296094 -92547762 - L1_Mur3 LINE L1 -2279 3601 3487 5 808 25 24 0 23 chr11 29296172 29296200 -92547656 + AT_rich Low_complexity Low_complexity 1 28 0 6 808 1123 70 0 0 chr11 29296200 29296342 -92547514 - B1_Mus1 SINE Alu -6 142 1 6 808 25 24 0 23 chr11 29296342 29296356 -92547500 + AT_rich Low_complexity Low_complexity 1 14 0 6 808 251 296 0 0 chr11 29296378 29296432 -92547424 - RLTR20C LTR ERVK 0 541 488 6 808 888 226 69 28 chr11 29296399 29296649 -92547207 - RLTR20C LTR ERVK -175 359 119 6 808 234 0 0 0 chr11 29296659 29296685 -92547171 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 808 768 67 0 9 chr11 29296687 29296792 -92547064 - B1_Mus1 SINE Alu -5 143 40 6 808 380 133 307 0 chr11 29296789 29296864 -92546992 - RLTR20C LTR ERVK -443 98 1 6 808 331 262 68 84 chr11 29296864 29296943 -92546913 - L1_Mur3 LINE L1 -2490 3390 3306 5 808 2106 109 41 3 chr11 29296943 29297257 -92546599 + L1_Mus2 LINE L1 6241 6566 0 6 808 331 262 68 84 chr11 29297257 29297427 -92546429 - L1_Mur3 LINE L1 -2575 3305 3146 5 808 1250 138 46 0 chr11 29297436 29297653 -92546203 - Lx2 LINE L1 -6 6991 6765 6 808 7375 97 26 13 chr11 29297639 29299010 -92544846 - Lx2 LINE L1 -349 6648 5262 6 808 1277 81 25 51 chr11 29299008 29299243 -92544613 - MusHAL1 LINE L1 -1742 970 742 6 808 745 200 191 16 chr11 29299467 29299650 -92544206 - B3 SINE B2 0 216 2 6 808 916 216 31 5 chr11 29300468 29300663 -92543193 - B3 SINE B2 -3 213 14 6 808 276 30 0 0 chr11 29300673 29300706 -92543150 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 6 808 1024 115 45 0 chr11 29300706 29300863 -92542993 - B2_Mm2 SINE B2 -31 164 1 6 808 1057 83 21 0 chr11 29300952 29301097 -92542759 - B1_Mus1 SINE Alu 0 148 1 6 808 679 158 102 29 chr11 29301103 29301240 -92542616 - B1_Mus2 SINE Alu 0 147 1 6 808 446 181 0 0 chr11 29301288 29301360 -92542496 - tRNA-Lys-AAG tRNA tRNA -4 72 1 6 808 337 227 45 11 chr11 29301743 29301832 -92542024 - Lx8 LINE L1 -326 7147 7056 6 808 968 216 56 10 chr11 29302090 29302286 -92541570 - B3 SINE B2 -11 205 1 6 808 723 283 0 36 chr11 29302373 29302538 -92541318 - B3 SINE B2 -56 160 2 6 808 359 286 87 49 chr11 29302557 29302712 -92541144 - B3A SINE B2 -6 192 33 6 808 297 0 0 0 chr11 29302712 29302745 -92541111 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 808 359 286 87 49 chr11 29302745 29302773 -92541083 - B3A SINE B2 -166 32 2 6 808 495 0 0 0 chr11 29302824 29302879 -92540977 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 808 2229 111 56 11 chr11 29303006 29303379 -92540477 - Lx LINE L1 0 6654 6265 6 808 258 105 0 0 chr11 29303388 29303426 -92540430 + (T)n Simple_repeat Simple_repeat 1 38 0 6 808 1036 83 21 0 chr11 29303429 29303573 -92540283 - B1_Mus2 SINE Alu 0 147 1 6 808 236 270 78 64 chr11 29303860 29304078 -92539778 - L1_Mur1 LINE L1 -4106 1780 1560 6 808 483 275 61 0 chr11 29304568 29304699 -92539157 - B1_Mur1 SINE Alu -7 142 4 6 808 239 117 0 48 chr11 29304715 29304778 -92539078 + T-rich Low_complexity Low_complexity 1 60 0 6 808 1221 47 0 0 chr11 29304778 29304926 -92538930 - B1_Mus1 SINE Alu 0 148 1 6 808 347 321 114 0 chr11 29305273 29305457 -92538399 + B3 SINE B2 1 205 -11 6 808 23 0 0 0 chr11 29305461 29305484 -92538372 + AT_rich Low_complexity Low_complexity 1 23 0 6 808 375 269 21 11 chr11 29305484 29305578 -92538278 + ID_B1 SINE B4 2 96 -128 6 808 189 0 0 0 chr11 29306622 29306643 -92537213 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6 808 778 161 7 1 chr11 29306783 29306922 -92536934 - B1_Mur4 SINE Alu -1 148 2 6 808 308 248 68 89 chr11 29306800 29306946 -92536910 - MT2B LTR ERVL -323 278 136 6 808 236 257 0 13 chr11 29306953 29307028 -92536828 - L1M2 LINE L1 -2451 3692 3619 6 808 7944 81 6 1 chr11 29307580 29308829 -92535027 - L1_Mus3 LINE L1 -2 6636 5382 6 808 3090 106 37 14 chr11 29308828 29309314 -92534542 + L1_Mus3 LINE L1 4866 5362 -521 6 808 845 35 9 0 chr11 29309315 29309428 -92534428 + (TTCTC)n Simple_repeat Simple_repeat 1 114 0 6 808 573 94 0 0 chr11 29309428 29309513 -92534343 + (TCCCC)n Simple_repeat Simple_repeat 5 89 0 6 808 16741 191 104 53 chr11 29309513 29311071 -92532785 - Lx LINE L1 -29 6625 5107 6 808 6393 88 42 12 chr11 29311071 29312036 -92531820 - Lx3_Mus LINE L1 0 7009 6016 6 808 16741 186 144 28 chr11 29312036 29313753 -92530103 - Lx LINE L1 -780 5106 2920 6 808 7888 38 26 1 chr11 29313753 29314725 -92529131 + L1Md_F3 LINE L1 5588 6583 -1 6 808 16741 186 144 28 chr11 29314725 29315617 -92528239 - Lx LINE L1 -2967 2919 1999 6 808 2741 72 3 3 chr11 29315617 29315981 -92527875 - L1_Mus1 LINE L1 -1 6566 6203 6 808 16741 130 75 33 chr11 29315981 29317374 -92526482 - Lx LINE L1 -3888 1998 623 6 808 578 221 253 52 chr11 29317378 29317628 -92526228 - ORR1D2 LTR MaLR -19 355 57 6 808 839 250 74 18 chr11 29317650 29317964 -92525892 - L1MA4 LINE L1 -396 5904 5502 6 808 629 25 0 12 chr11 29318039 29318119 -92525737 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 6 808 379 254 148 0 chr11 29318450 29318592 -92525264 - RodERV21-int LTR ERV1 -145 4846 4684 6 808 319 343 17 44 chr11 29319472 29319765 -92524091 - RodERV21-int LTR ERV1 -3221 3870 3586 6 808 2704 107 26 75 chr11 29319847 29320384 -92523472 - RMER17A LTR ERVK 0 751 241 6 808 635 272 44 0 chr11 29320394 29320574 -92523282 - B3A SINE B2 -10 188 1 6 808 320 328 153 0 chr11 29320614 29320745 -92523111 + L2a LINE L2 3273 3423 -3 6 808 363 44 0 0 chr11 29320926 29320971 -92522885 + (TATG)n Simple_repeat Simple_repeat 4 48 0 6 808 942 116 0 0 chr11 29320973 29321102 -92522754 - B2_Mm2 SINE B2 -65 130 2 6 808 390 74 0 0 chr11 29321253 29321307 -92522549 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 6 808 394 204 75 11 chr11 29321313 29321407 -92522449 - B1_Mus1 SINE Alu -31 117 18 6 808 224 266 121 30 chr11 29321437 29321503 -92522353 - B1F1 SINE Alu -68 81 10 6 808 295 321 20 132 chr11 29322206 29322357 -92521499 - B1F SINE Alu -12 137 4 6 808 530 295 36 7 chr11 29324163 29324303 -92519553 - B1F SINE Alu -1 148 5 6 808 685 188 120 40 chr11 29325129 29325329 -92518527 + B3 SINE B2 1 216 0 6 808 577 250 203 24 chr11 29325392 29325638 -92518218 - B4A SINE B4 -1 291 2 6 808 324 0 0 0 chr11 29325964 29326000 -92517856 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 808 306 125 0 0 chr11 29326096 29326144 -92517712 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 808 215 298 193 82 chr11 29326146 29326281 -92517575 - B4 SINE B4 -141 151 2 6 808 1598 37 0 0 chr11 29326359 29326547 -92517309 - B2_Mm1t SINE B2 -5 188 1 6 808 253 89 35 35 chr11 29326562 29326620 -92517236 + T-rich Low_complexity Low_complexity 3 60 0 6 808 771 259 12 0 chr11 29326623 29326785 -92517071 - ID_B1 SINE B4 -49 175 12 6 808 230 259 0 47 chr11 29327000 29327085 -92516771 - L1MA5 LINE L1 -79 6221 6141 6 808 2450 84 36 3 chr11 29327437 29327794 -92516062 + L1_Mus3 LINE L1 6265 6633 -5 6 808 247 295 82 98 chr11 29328907 29329091 -92514765 + MIRb SINE MIR 2 182 -86 6 808 28 0 0 0 chr11 29329849 29329877 -92513979 + AT_rich Low_complexity Low_complexity 1 28 0 6 808 347 245 17 113 chr11 29330293 29330408 -92513448 + MT2B LTR ERVL 155 258 -343 6 808 920 147 7 14 chr11 29330305 29330450 -92513406 + B1_Mur4 SINE Alu 6 149 -1 6 808 558 156 55 0 chr11 29330593 29330702 -92513154 + B1_Mus1 SINE Alu 26 140 -8 6 808 601 282 106 63 chr11 29330658 29330942 -92512914 - MER2 DNA MER2_type -30 315 20 6 808 311 354 46 23 chr11 29331321 29331451 -92512405 - B1F SINE Alu -15 134 2 6 808 23722 135 13 11 chr11 29331508 29333180 -92510676 - Lx LINE L1 -360 6294 4595 6 808 1220 108 22 0 chr11 29333180 29333365 -92510491 - B2_Mm1t SINE B2 -3 190 2 6 808 23722 148 28 36 chr11 29333365 29337667 -92506189 - Lx LINE L1 -1270 4613 374 6 808 39 50 0 0 chr11 29338400 29338460 -92505396 + AT_rich Low_complexity Low_complexity 1 60 0 6 808 35377 36 0 0 chr11 29338716 29344141 -92499715 + L1Md_T LINE L1 68 5589 -297 6 808 8927 6 0 3 chr11 29344141 29345140 -92498716 + L1Md_T LINE L1 5590 6585 0 6 808 207 0 0 0 chr11 29345167 29345190 -92498666 + (A)n Simple_repeat Simple_repeat 1 23 0 6 808 530 282 10 40 chr11 29345512 29345664 -92498192 + ID_B1 SINE B4 82 224 0 6 808 22 56 0 0 chr11 29345700 29345736 -92498120 + AT_rich Low_complexity Low_complexity 1 36 0 6 808 283 297 0 75 chr11 29345962 29345977 -92497879 + B4 SINE B4 77 85 -207 6 808 470 225 0 0 chr11 29345977 29346057 -92497799 + B1_Mur4 SINE Alu 2 81 -69 6 808 230 246 0 115 chr11 29345991 29346069 -92497787 + MT2B LTR ERVL 179 247 -354 6 808 245 198 23 23 chr11 29346069 29346157 -92497699 + GA-rich Low_complexity Low_complexity 4 91 0 6 808 1026 219 29 5 chr11 29346548 29346754 -92497102 + B3 SINE B2 1 211 -5 6 808 386 274 169 11 chr11 29347291 29347468 -92496388 + MER3 DNA MER1_type 1 205 -4 6 808 301 269 0 71 chr11 29347687 29347771 -92496085 - B1_Mur3 SINE Alu -70 79 2 6 808 364 266 36 27 chr11 29348211 29348323 -92495533 + ID_B1 SINE B4 102 214 -10 6 808 22 88 0 0 chr11 29349398 29349455 -92494401 + AT_rich Low_complexity Low_complexity 1 57 0 6 808 241 197 25 38 chr11 29349675 29349754 -92494102 - L1MB7 LINE L1 -5 6179 6102 6 808 412 232 152 0 chr11 29349802 29349940 -92493916 - L1MB7 LINE L1 -192 5992 5834 6 808 452 290 37 0 chr11 29350034 29350141 -92493715 + RSINE1 SINE B4 34 144 -21 6 808 365 326 0 0 chr11 29350330 29350419 -92493437 - RSINE1 SINE B4 -1 164 76 6 808 216 274 0 19 chr11 29350865 29350917 -92492939 - B3A SINE B2 -137 61 11 6 808 516 32 0 0 chr11 29351460 29351522 -92492334 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 808 798 172 14 7 chr11 29351683 29351829 -92492027 + B1_Mur4 SINE Alu 3 149 -1 6 808 192 40 0 0 chr11 29352150 29352175 -92491681 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 808 674 105 9 0 chr11 29352175 29352280 -92491576 + (GA)n Simple_repeat Simple_repeat 2 107 0 7 808 940 203 19 24 chr11 29352404 29352611 -92491245 - B3 SINE B2 -2 214 9 7 808 1218 48 0 0 chr11 29352810 29352956 -92490900 - B1_Mus2 SINE Alu 0 147 2 7 808 37 39 0 0 chr11 29352986 29353037 -92490819 + AT_rich Low_complexity Low_complexity 1 51 0 7 808 25 31 0 0 chr11 29353085 29353117 -92490739 + AT_rich Low_complexity Low_complexity 1 32 0 7 808 1121 82 0 7 chr11 29353565 29353713 -92490143 - B1_Mus1 SINE Alu -1 147 1 7 808 639 306 0 12 chr11 29353946 29354108 -92489748 + RSINE1 SINE B4 3 162 -3 7 808 200 227 0 0 chr11 29354157 29354201 -92489655 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 7 808 342 315 89 95 chr11 29354499 29354528 -92489328 + B4 SINE B4 39 73 -219 7 808 225 299 0 0 chr11 29354528 29354595 -92489261 + ID4 SINE ID 2 68 -15 7 808 342 315 89 95 chr11 29354595 29354615 -92489241 + B4 SINE B4 74 215 -77 7 808 732 194 39 0 chr11 29354615 29354744 -92489112 + B1_Mur1 SINE Alu 6 139 -10 7 808 213 286 10 117 chr11 29354808 29354911 -92488945 + PB1D10 SINE Alu 21 112 -5 7 808 1069 64 43 0 chr11 29356040 29356181 -92487675 + B1_Mus2 SINE Alu 1 147 0 7 808 26 50 0 0 chr11 29356631 29356671 -92487185 + AT_rich Low_complexity Low_complexity 1 40 0 7 808 180 0 0 0 chr11 29357206 29357226 -92486630 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 808 503 188 12 45 chr11 29357291 29357410 -92486446 + B1_Mus2 SINE Alu 3 115 -5 7 808 310 259 128 43 chr11 29358008 29358125 -92485731 + L1M2 LINE L1 4249 4375 -1768 7 808 249 318 83 56 chr11 29358125 29358156 -92485700 + B4A SINE B4 61 150 -142 7 808 624 160 126 0 chr11 29358156 29358275 -92485581 + B1_Mus2 SINE Alu 9 142 -5 7 808 249 318 83 56 chr11 29358275 29358305 -92485551 + B4A SINE B4 151 245 -47 7 808 230 235 0 73 chr11 29358354 29358409 -92485447 + RSINE1 SINE B4 13 63 -102 7 808 901 226 34 5 chr11 29358456 29358665 -92485191 + B3 SINE B2 2 216 0 7 808 740 253 93 20 chr11 29358738 29358984 -92484872 + L1M2 LINE L1 4786 5049 -1094 7 808 642 266 84 132 chr11 29359049 29359586 -92484270 - Charlie10 DNA MER1_type -254 2568 2058 7 808 489 248 94 16 chr11 29359587 29359714 -92484142 - ID_B1 SINE B4 -1 223 87 7 12 1153 245 88 51 chr11 29359936 29360345 -92483511 + RMER1C Other Other 902 1325 -17 7 809 409 232 0 35 chr11 29361160 29361245 -92482611 + ID4 SINE ID 1 82 -1 7 809 546 189 38 0 chr11 29361416 29361522 -92482334 - B3 SINE B2 -1 215 106 7 809 377 305 52 90 chr11 29361931 29362086 -92481770 + Tigger7 DNA MER2_type 4 152 -2339 7 809 367 333 80 0 chr11 29362294 29362432 -92481424 + Tigger7 DNA MER2_type 2342 2490 -1 7 809 336 299 53 38 chr11 29364482 29364614 -92479242 - MIRb SINE MIR -110 158 25 7 809 22 56 0 0 chr11 29364918 29364954 -92478902 + AT_rich Low_complexity Low_complexity 1 36 0 7 809 2024 64 25 0 chr11 29364969 29365250 -92478606 - Lx LINE L1 -7 6647 6360 7 809 505 83 14 0 chr11 29365342 29365414 -92478442 - Lx LINE L1 -225 6429 6357 7 809 454 323 44 25 chr11 29365926 29366085 -92477771 + RSINE1 SINE B4 3 164 -1 7 809 204 194 0 0 chr11 29366093 29366129 -92477727 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 809 784 159 56 0 chr11 29366173 29366299 -92477557 + B1_Mus1 SINE Alu 1 133 -15 7 809 525 186 105 9 chr11 29366336 29366450 -92477406 + B3 SINE B2 86 210 -6 7 809 32 26 0 0 chr11 29366456 29366495 -92477361 + AT_rich Low_complexity Low_complexity 1 39 0 7 809 207 204 0 0 chr11 29367396 29367440 -92476416 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 7 809 289 281 157 0 chr11 29367603 29367692 -92476164 + RSINE1 SINE B4 61 163 -2 7 809 1087 101 0 0 chr11 29367816 29367964 -92475892 + B1_Mus1 SINE Alu 1 148 0 7 809 21 0 0 0 chr11 29367968 29367989 -92475867 + AT_rich Low_complexity Low_complexity 1 21 0 7 809 901 180 137 5 chr11 29368753 29368943 -92474913 + B3 SINE B2 1 215 -1 7 809 374 301 85 54 chr11 29369044 29369081 -92474775 - ID_B1 SINE B4 -11 213 183 7 809 1170 85 97 0 chr11 29369081 29369257 -92474599 - B2_Mm2 SINE B2 -2 193 1 7 809 374 311 74 47 chr11 29369257 29369362 -92474494 - ID_B1 SINE B4 -42 182 71 7 809 682 314 117 9 chr11 29369418 29369649 -92474207 + B4A SINE B4 37 292 0 7 809 371 224 267 0 chr11 29369831 29369947 -92473909 - B1_Mur1 SINE Alu 0 149 3 7 809 258 83 396 45 chr11 29370960 29371071 -92472785 - B2_Mm2 SINE B2 0 195 46 7 809 1085 100 0 0 chr11 29371081 29371231 -92472625 - B2_Mm2 SINE B2 -45 150 1 7 809 183 129 0 0 chr11 29371246 29371277 -92472579 + (T)n Simple_repeat Simple_repeat 1 31 0 7 809 569 290 53 0 chr11 29371566 29371697 -92472159 - RSINE1 SINE B4 -24 141 4 7 809 355 321 95 0 chr11 29371906 29372074 -92471782 + LTR87 LTR ERVL? 441 624 0 7 809 247 274 269 13 chr11 29372369 29372601 -92471255 + L1MEc LINE L1 2024 2314 -4086 7 809 808 256 22 5 chr11 29373090 29373275 -92470581 - B3 SINE B2 -27 189 2 7 809 419 276 109 38 chr11 29373276 29373509 -92470347 + L1MEc LINE L1 4340 4587 -1732 7 809 333 288 14 0 chr11 29373607 29373680 -92470176 + ID4 SINE ID 9 82 -1 7 809 250 275 0 28 chr11 29373770 29373841 -92470015 - L1_Mm LINE L1 -1343 4540 4472 7 809 358 167 12 12 chr11 29373874 29373959 -92469897 + CT-rich Low_complexity Low_complexity 3 87 0 7 809 280 258 0 29 chr11 29374012 29374080 -92469776 - RLTR17 LTR ERVK -424 268 203 7 809 900 308 77 26 chr11 29374124 29374708 -92469148 - L1_Mur3 LINE L1 -1511 4369 3756 7 809 723 220 17 68 chr11 29374722 29374946 -92468910 - B3A SINE B2 -1 215 1 7 809 32 0 0 0 chr11 29375044 29375076 -92468780 + AT_rich Low_complexity Low_complexity 1 32 0 7 809 311 299 97 13 chr11 29375095 29375332 -92468524 + L1ME2z LINE L1 5725 5981 -463 7 809 25 0 0 0 chr11 29375417 29375442 -92468414 + AT_rich Low_complexity Low_complexity 1 25 0 7 809 2026 110 135 9 chr11 29375629 29375978 -92467878 - Lx3B LINE L1 -3 6970 6578 7 809 746 119 284 5 chr11 29375965 29376166 -92467690 + Lx3C LINE L1 6093 6349 -627 7 809 263 266 76 76 chr11 29376463 29376508 -92467348 + PB1D9 SINE Alu 2 119 -1 7 809 263 264 14 14 chr11 29376508 29376581 -92467275 + ID_B1 SINE B4 151 223 -1 7 809 1427 274 102 77 chr11 29377652 29377960 -92465896 - MTE-int LTR MaLR -703 877 570 7 809 1197 28 28 0 chr11 29377960 29378103 -92465753 + B1_Mus1 SINE Alu 2 148 0 7 809 1427 274 102 77 chr11 29378103 29378414 -92465442 - MTE-int LTR MaLR -1011 569 243 7 809 444 296 101 65 chr11 29378433 29378740 -92465116 - MTEa-int LTR MaLR -1193 387 1 7 809 889 253 141 15 chr11 29378740 29379062 -92464794 - MTEa LTR MaLR -16 403 1 7 809 292 246 0 17 chr11 29379076 29379134 -92464722 + ID_B1 SINE B4 160 216 -8 7 809 286 284 10 59 chr11 29379259 29379360 -92464496 - PB1D10 SINE Alu -1 116 21 7 809 21 0 0 0 chr11 29379437 29379458 -92464398 + AT_rich Low_complexity Low_complexity 1 21 0 7 809 1453 78 5 0 chr11 29379858 29380049 -92463807 + B2_Mm1t SINE B2 1 192 -1 7 809 487 41 0 40 chr11 29380882 29380958 -92462898 + L1_Mus2 LINE L1 6494 6566 0 7 809 1203 176 118 25 chr11 29381077 29381322 -92462534 + Lx4A LINE L1 6779 7046 -12 7 809 21 0 0 0 chr11 29381322 29381343 -92462513 + AT_rich Low_complexity Low_complexity 1 21 0 7 809 538 248 124 25 chr11 29381666 29381735 -92462121 + B4 SINE B4 2 86 -206 7 809 332 266 35 44 chr11 29381735 29381849 -92462007 + PB1D9 SINE Alu 1 113 -7 7 809 431 371 7 0 chr11 29381850 29381990 -92461866 + RSINE1 SINE B4 19 159 -6 7 809 305 284 0 56 chr11 29381995 29382066 -92461790 - B1_Mus2 SINE Alu -79 68 2 7 809 228 305 0 48 chr11 29382012 29382074 -92461782 - B4A SINE B4 -152 140 82 7 809 21 0 0 0 chr11 29382433 29382454 -92461402 + AT_rich Low_complexity Low_complexity 1 21 0 7 809 1263 67 0 0 chr11 29382801 29382980 -92460876 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 809 1238 95 45 0 chr11 29383883 29384062 -92459794 + B2_Mm2 SINE B2 3 189 -6 7 809 369 0 0 0 chr11 29384225 29384266 -92459590 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 809 200 250 84 42 chr11 29384466 29384537 -92459319 - L3 LINE CR1 -604 3885 3812 7 809 2026 104 65 0 chr11 29385339 29385648 -92458208 - ORR1A4 LTR MaLR 0 329 1 7 809 283 187 504 0 chr11 29386715 29386854 -92457002 - B3 SINE B2 -7 209 1 7 809 309 285 31 31 chr11 29387419 29387546 -92456310 + L1ME3A LINE L1 5947 6073 -100 7 809 1335 82 6 0 chr11 29388381 29388563 -92455293 + B2_Mm1a SINE B2 2 184 -9 7 809 1528 167 166 3 chr11 29388560 29388867 -92454989 - ORR1B2 LTR MaLR -10 357 1 7 809 1406 55 28 0 chr11 29389217 29389398 -92454458 + B2_Mm2 SINE B2 2 187 -8 7 809 419 205 12 0 chr11 29390449 29390532 -92453324 + ID_B1 SINE B4 141 224 0 7 809 342 354 67 13 chr11 29391373 29391522 -92452334 + Charlie16a DNA MER1_type 173 329 -13 7 809 396 287 27 18 chr11 29392110 29392220 -92451636 - PB1D9 SINE Alu -1 119 9 7 809 477 279 0 125 chr11 29392393 29392577 -92451279 - RSINE1 SINE B4 -4 161 1 7 809 2598 133 10 0 chr11 29393041 29393431 -92450425 - ORR1B1 LTR MaLR 0 394 1 7 809 285 220 275 0 chr11 29394778 29394869 -92448987 + PB1D10 SINE Alu 1 116 -1 7 809 1103 200 19 5 chr11 29396249 29396455 -92447401 - B3 SINE B2 -7 209 1 7 809 208 191 21 0 chr11 29396803 29396850 -92447006 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 809 261 57 0 0 chr11 29397800 29397835 -92446021 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 7 809 899 174 0 26 chr11 29398864 29399017 -92444839 + B1_Mur4 SINE Alu 2 150 0 8 809 698 277 0 71 chr11 29399826 29400024 -92443832 + B3A SINE B2 1 184 -14 8 809 242 267 46 73 chr11 29400025 29400134 -92443722 + RSINE1 SINE B4 27 132 -33 8 809 21 57 0 0 chr11 29400148 29400183 -92443673 + AT_rich Low_complexity Low_complexity 1 35 0 8 809 932 239 29 14 chr11 29400193 29400401 -92443455 + B3 SINE B2 1 211 -5 8 809 23 0 0 0 chr11 29400403 29400426 -92443430 + AT_rich Low_complexity Low_complexity 1 23 0 8 809 1110 89 0 0 chr11 29400431 29400577 -92443279 + B1_Mus1 SINE Alu 2 147 -1 8 809 246 188 0 59 chr11 29401123 29401174 -92442682 + tRNA-Ala-GCY_ tRNA tRNA 3 50 -25 8 809 220 246 26 104 chr11 29401174 29401200 -92442656 + ID4 SINE ID 9 79 -4 8 809 21 36 0 0 chr11 29401834 29401862 -92441994 + AT_rich Low_complexity Low_complexity 1 28 0 8 809 1578 84 4 0 chr11 29401944 29402170 -92441686 + MusHAL1 LINE L1 2000 2226 -486 8 809 243 0 0 0 chr11 29402269 29402296 -92441560 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 809 1103 30 8 0 chr11 29402297 29402430 -92441426 - B1_Mus1 SINE Alu -12 136 3 8 809 388 243 261 0 chr11 29402664 29402775 -92441081 + B1F SINE Alu 1 140 -9 8 809 268 263 200 17 chr11 29405773 29405893 -92437963 + B4A SINE B4 81 222 -70 8 809 492 198 18 54 chr11 29405791 29405903 -92437953 + PB1D9 SINE Alu 13 120 0 8 809 360 43 0 0 chr11 29405963 29406009 -92437847 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 809 21 57 0 0 chr11 29408640 29408675 -92435181 + AT_rich Low_complexity Low_complexity 1 35 0 8 809 314 307 168 24 chr11 29410068 29410235 -92433621 - AmnSINE1 SINE SINE -27 548 358 8 809 310 162 62 0 chr11 29410972 29411052 -92432804 - Tigger7 DNA MER2_type -113 2378 2294 8 809 249 290 43 0 chr11 29411086 29411155 -92432701 - ID4_ SINE ID -11 72 1 8 809 285 202 119 0 chr11 29411155 29411238 -92432618 - Tigger7 DNA MER2_type -230 2261 2169 8 809 585 295 177 35 chr11 29411249 29411509 -92432347 - Tigger7 DNA MER2_type -2172 319 23 8 809 783 240 43 21 chr11 29411549 29411736 -92432120 + B3 SINE B2 1 191 -25 8 809 431 281 192 18 chr11 29412312 29412588 -92431268 - MT2A LTR ERVL -209 324 1 8 809 366 206 73 18 chr11 29412925 29413034 -92430822 - PB1D9 SINE Alu -5 115 1 8 809 1241 74 6 11 chr11 29413038 29413057 -92430799 - B2_Mm2 SINE B2 -18 177 160 8 809 207 0 0 0 chr11 29413057 29413080 -92430776 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 809 1241 74 6 11 chr11 29413080 29413237 -92430619 - B2_Mm2 SINE B2 -36 159 2 8 809 291 270 0 13 chr11 29413810 29413885 -92429971 - ID2 SINE ID -9 74 1 8 809 372 279 96 0 chr11 29414467 29414571 -92429285 - B3A SINE B2 -84 114 1 8 809 710 205 77 18 chr11 29415255 29415424 -92428432 - B3 SINE B2 -9 207 29 8 809 1133 49 7 0 chr11 29415455 29415598 -92428258 + B1_Mus2 SINE Alu 4 147 0 8 809 402 271 39 78 chr11 29415865 29415993 -92427863 - RMER10B LTR ERVL -7 391 269 8 809 1167 55 0 14 chr11 29416338 29416486 -92427370 + B1_Mus1 SINE Alu 2 147 -1 8 809 882 138 234 0 chr11 29416491 29416658 -92427198 - B3 SINE B2 -10 206 1 8 809 180 0 0 0 chr11 29416668 29416688 -92427168 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 809 746 169 178 18 chr11 29416694 29416857 -92426999 - B3 SINE B2 -27 189 1 8 809 1960 61 57 0 chr11 29416885 29417164 -92426692 - Lx LINE L1 0 6654 6360 8 809 537 258 80 8 chr11 29417657 29417782 -92426074 - RSINE1 SINE B4 -29 136 3 8 809 266 260 141 86 chr11 29417859 29417904 -92425952 - B4 SINE B4 0 292 125 8 809 490 227 32 32 chr11 29417904 29418048 -92425808 - PB1D9 SINE Alu 0 149 6 8 809 589 94 12 0 chr11 29418177 29418262 -92425594 - URR1B DNA MER1_type 0 225 140 8 809 1168 61 0 0 chr11 29418263 29418410 -92425446 + B1_Mus1 SINE Alu 2 148 0 8 809 32 0 0 0 chr11 29418412 29418444 -92425412 + AT_rich Low_complexity Low_complexity 1 32 0 8 809 1115 114 51 11 chr11 29418446 29418624 -92425232 + B2_Mm1t SINE B2 3 187 -6 8 809 321 156 31 0 chr11 29418625 29418689 -92425167 - URR1B DNA MER1_type -74 151 86 8 809 613 186 76 23 chr11 29418968 29419100 -92424756 + B1F2 SINE Alu 3 141 -8 8 809 1574 116 219 7 chr11 29419123 29419392 -92424464 - ORR1A3 LTR MaLR 0 326 1 8 809 360 188 85 24 chr11 29419404 29419486 -92424370 + B3A SINE B2 2 88 -110 8 809 1099 213 118 26 chr11 29419484 29419797 -92424059 + RCHARR1 DNA MER1_type 624 965 -9 8 809 692 281 5 20 chr11 29421267 29421463 -92422393 + B3A SINE B2 1 193 -5 8 809 778 176 69 0 chr11 29421478 29421609 -92422247 - B1_Mus1 SINE Alu -6 142 3 8 809 268 239 28 14 chr11 29421895 29421967 -92421889 + B3 SINE B2 2 74 -142 8 809 639 234 63 7 chr11 29422094 29422236 -92421620 - RSINE1 SINE B4 -2 163 14 8 809 803 193 96 30 chr11 29422290 29422478 -92421378 - B3 SINE B2 0 193 1 8 809 1431 148 21 54 chr11 29422772 29423051 -92420805 + RMER6B LTR ERVK 1 270 -191 8 809 1533 52 16 0 chr11 29423052 29423243 -92420613 + B2_Mm2 SINE B2 2 195 0 8 809 4504 55 0 0 chr11 29423374 29423934 -92419922 - L1Md_F2 LINE L1 -2 6580 6021 8 809 401 204 204 0 chr11 29423934 29424027 -92419829 - PB1D9 SINE Alu -8 112 1 8 809 1134 48 14 7 chr11 29424083 29424230 -92419626 + B1_Mus1 SINE Alu 1 148 0 8 809 21 0 0 0 chr11 29424230 29424251 -92419605 + AT_rich Low_complexity Low_complexity 1 21 0 8 809 1126 169 0 38 chr11 29424252 29424461 -92419395 + RMER6B LTR ERVK 257 457 -4 8 809 2770 147 57 13 chr11 29424639 29425114 -92418742 + RLTR19A LTR ERVK 1 496 0 8 809 230 250 19 0 chr11 29425682 29425734 -92418122 + RSINE1 SINE B4 11 63 -102 8 809 181 299 107 43 chr11 29426016 29426156 -92417700 - MIR SINE MIR -68 194 46 8 809 199 292 42 63 chr11 29426772 29426867 -92416989 + MIR3 SINE MIR 109 201 -7 8 809 983 133 14 0 chr11 29426989 29427132 -92416724 + B1_Mur2 SINE Alu 5 149 0 8 809 230 197 14 57 chr11 29427212 29427282 -92416574 + CT-rich Low_complexity Low_complexity 6 72 0 8 809 275 216 142 67 chr11 29427294 29427428 -92416428 - B1F2 SINE Alu -5 144 1 8 809 180 34 33 33 chr11 29427596 29427626 -92416230 - L3 LINE CR1 -3317 1172 1143 8 809 468 338 25 62 chr11 29427891 29428052 -92415804 - RSINE1 SINE B4 0 165 11 8 809 189 74 0 0 chr11 29428075 29428102 -92415754 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 809 580 282 15 0 chr11 29428102 29428233 -92415623 - ID_B1 SINE B4 -10 214 82 8 809 586 194 130 15 chr11 29428260 29428380 -92415476 + B1_Mur4 SINE Alu 1 137 -13 8 809 360 0 0 0 chr11 29428380 29428420 -92415436 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 8 809 214 367 31 0 chr11 29428439 29428537 -92415319 + PB1D10 SINE Alu 6 106 -11 8 809 1004 160 121 11 chr11 29428626 29428816 -92415040 - URR1A DNA MER1_type -15 211 1 8 809 1331 82 16 5 chr11 29428834 29429018 -92414838 + B2_Mm2 SINE B2 2 187 -8 8 809 613 242 176 0 chr11 29429143 29429308 -92414548 + B3 SINE B2 23 216 0 8 809 201 39 0 0 chr11 29429389 29429415 -92414441 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 809 376 277 260 0 chr11 29429515 29429692 -92414164 - ID_B1 SINE B4 -1 223 1 8 809 228 330 118 9 chr11 29429775 29429885 -92413971 + L2c LINE L2 3263 3384 -3 8 809 472 180 225 0 chr11 29430419 29430530 -92413326 + B1_Mus2 SINE Alu 1 136 -11 8 809 512 185 146 32 chr11 29430914 29431037 -92412819 + B1_Mur1 SINE Alu 12 148 -1 8 809 724 193 132 7 chr11 29431058 29431209 -92412647 + B3 SINE B2 42 211 -5 8 809 257 250 152 107 chr11 29431235 29431347 -92412509 + B1F1 SINE Alu 1 117 -3 8 809 910 238 19 24 chr11 29431449 29431656 -92412200 - B3 SINE B2 -6 210 5 8 809 189 0 0 0 chr11 29431763 29431784 -92412072 + (T)n Simple_repeat Simple_repeat 1 21 0 8 809 1206 48 0 0 chr11 29431784 29431931 -92411925 - B1_Mus2 SINE Alu 0 147 1 8 809 268 210 25 0 chr11 29431968 29432049 -92411807 + CT-rich Low_complexity Low_complexity 2 84 0 8 809 1396 65 5 21 chr11 29432121 29432309 -92411547 + B2_Mm1a SINE B2 2 186 -7 8 809 259 283 0 16 chr11 29432319 29432380 -92411476 + B1F1 SINE Alu 1 60 -89 8 809 1049 231 18 23 chr11 29432949 29433166 -92410690 - B3 SINE B2 0 216 1 8 809 410 306 54 33 chr11 29434222 29434427 -92409429 - MIRb SINE MIR -47 221 7 8 809 306 279 17 67 chr11 29434692 29434811 -92409045 + PB1D7 SINE Alu 1 113 -7 8 809 1121 62 0 0 chr11 29434819 29434963 -92408893 + B1_Mus2 SINE Alu 2 145 -2 8 809 600 207 83 0 chr11 29435348 29435469 -92408387 + B1_Mus2 SINE Alu 1 131 -16 8 809 1287 45 65 27 chr11 29435470 29435654 -92408202 - B2_Mm2 SINE B2 -3 192 2 8 809 829 274 55 5 chr11 29435706 29435908 -92407948 + B3 SINE B2 1 212 -4 8 809 3064 132 100 56 chr11 29436076 29436668 -92407188 - RMER6A LTR ERVK -138 618 1 8 809 621 186 0 8 chr11 29437045 29437164 -92406692 - PB1D9 SINE Alu -2 118 1 8 809 623 228 15 30 chr11 29437189 29437320 -92406536 - ID_B1 SINE B4 -95 129 1 8 809 644 248 113 5 chr11 29437361 29437564 -92406292 + B4A SINE B4 6 230 -62 8 809 801 245 94 0 chr11 29437570 29437762 -92406094 + B3 SINE B2 7 216 0 8 809 804 156 30 0 chr11 29437765 29437900 -92405956 + B1_Mus1 SINE Alu 1 139 -9 9 809 240 35 0 0 chr11 29437900 29437929 -92405927 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 809 577 223 42 151 chr11 29437936 29438074 -92405782 + B3 SINE B2 4 115 -101 9 809 1481 48 37 0 chr11 29438074 29438261 -92405595 - B2_Mm2 SINE B2 -1 194 1 9 809 577 223 42 151 chr11 29438261 29438360 -92405496 + B3 SINE B2 116 215 -1 9 809 342 242 141 0 chr11 29439513 29439612 -92404244 + PB1D10 SINE Alu 2 114 -3 9 809 760 224 139 6 chr11 29439623 29439803 -92404053 + B3 SINE B2 2 205 -11 9 809 23 33 0 0 chr11 29440466 29440496 -92403360 + AT_rich Low_complexity Low_complexity 1 30 0 9 809 364 255 61 10 chr11 29441774 29441873 -92401983 + B3 SINE B2 92 195 -21 9 809 291 176 0 0 chr11 29442001 29442038 -92401818 + A-rich Low_complexity Low_complexity 1 37 0 9 809 1192 48 7 0 chr11 29442038 29442184 -92401672 + B1_Mm SINE Alu 1 147 0 9 809 291 176 0 0 chr11 29442184 29442220 -92401636 + A-rich Low_complexity Low_complexity 38 73 0 9 809 3061 88 2 2 chr11 29442733 29443156 -92400700 + L1Md_F2 LINE L1 6160 6582 0 9 809 1087 82 0 7 chr11 29443163 29443311 -92400545 + B1_Mm SINE Alu 1 147 0 9 809 799 107 16 0 chr11 29443636 29443757 -92400099 - B1_Mur2 SINE Alu -26 123 1 9 809 272 301 0 25 chr11 29443757 29443809 -92400047 - ORR1B1-int LTR MaLR -863 646 599 9 809 568 292 0 8 chr11 29444092 29444223 -92399633 - B3 SINE B2 -44 172 43 9 809 1225 48 0 0 chr11 29445111 29445258 -92398598 + B1_Mm SINE Alu 1 147 0 9 809 21 0 0 0 chr11 29445258 29445279 -92398577 + AT_rich Low_complexity Low_complexity 1 21 0 9 809 1142 60 121 0 chr11 29445286 29445452 -92398404 + B2_Mm1a SINE B2 2 187 -6 9 809 210 263 79 59 chr11 29446491 29446592 -92397264 + PB1D7 SINE Alu 11 113 -7 9 809 212 260 25 76 chr11 29446906 29446985 -92396871 - PB1D9 SINE Alu -44 76 2 9 809 333 282 104 32 chr11 29448920 29449074 -92394782 + B4A SINE B4 2 166 -126 9 809 338 312 88 0 chr11 29449144 29449269 -92394587 + RSINE1 SINE B4 2 137 -28 9 809 21 0 0 0 chr11 29449292 29449313 -92394543 + AT_rich Low_complexity Low_complexity 1 21 0 9 809 226 300 0 20 chr11 29449467 29449518 -92394338 + ID4 SINE ID 33 82 -1 9 809 247 329 70 42 chr11 29449675 29449818 -92394038 + L2c LINE L2 3241 3387 0 9 809 503 284 38 19 chr11 29449852 29450010 -92393846 + RSINE1 SINE B4 4 164 -1 9 809 757 203 22 7 chr11 29450174 29450313 -92393543 - B1_Mur1 SINE Alu -1 148 8 9 809 807 214 0 0 chr11 29450560 29450691 -92393165 - B1_Mur1 SINE Alu -6 143 13 9 809 237 119 0 0 chr11 29450855 29450897 -92392959 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 809 981 232 21 5 chr11 29450902 29451088 -92392768 - B3 SINE B2 -26 190 2 9 809 291 211 0 78 chr11 29451157 29451234 -92392622 + ID_B1 SINE B4 121 191 -33 9 809 222 284 30 0 chr11 29451469 29451536 -92392320 + ID4 SINE ID 2 70 -13 9 809 314 234 70 61 chr11 29451685 29451799 -92392057 - RSINE1 SINE B4 -35 130 16 9 809 237 43 0 60 chr11 29451814 29451864 -92391992 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 809 903 108 70 0 chr11 29451864 29451993 -92391863 - B1_Mus1 SINE Alu -9 139 2 9 809 1125 68 0 57 chr11 29452332 29452489 -92391367 - B1_Mus1 SINE Alu 0 148 1 9 809 648 38 0 0 chr11 29453030 29453109 -92390747 + (GA)n Simple_repeat Simple_repeat 1 79 0 9 809 1433 64 11 0 chr11 29453119 29453307 -92390549 - B2_Mm1t SINE B2 -3 190 1 9 809 310 330 0 0 chr11 29454181 29454281 -92389575 + PB1 SINE Alu 1 100 -27 9 809 1025 39 46 8 chr11 29455159 29455290 -92388566 - B1_Mus2 SINE Alu -11 136 1 9 809 772 230 20 46 chr11 29455491 29455687 -92388169 + B3A SINE B2 1 191 -7 9 809 24 0 0 0 chr11 29456316 29456340 -92387516 + AT_rich Low_complexity Low_complexity 1 24 0 9 809 257 269 235 0 chr11 29456356 29456475 -92387381 - B1F SINE Alu -2 147 1 9 809 286 205 171 5 chr11 29456746 29456818 -92387038 - B1F SINE Alu -7 110 33 9 809 372 267 57 19 chr11 29456836 29456943 -92386913 + MLT1D LTR MaLR 291 488 -17 9 809 449 248 26 0 chr11 29456984 29457097 -92386759 + PB1D10 SINE Alu 1 116 -1 9 809 308 135 14 0 chr11 29457211 29457285 -92386571 + (TTTTTG)n Simple_repeat Simple_repeat 4 78 0 9 809 1185 68 7 0 chr11 29457290 29457437 -92386419 - B1_Mus1 SINE Alu 0 148 1 9 809 266 281 189 8 chr11 29458054 29458176 -92385680 + B4A SINE B4 1 144 -148 9 809 201 345 17 0 chr11 29458194 29458252 -92385604 + MER5A DNA MER1_type 68 126 -63 9 809 671 264 91 5 chr11 29458798 29458996 -92384860 - B3 SINE B2 0 216 2 9 809 190 0 67 0 chr11 29459031 29459061 -92384795 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 9 809 746 96 43 0 chr11 29459062 29459177 -92384679 - PB1D9 SINE Alu 0 120 1 9 809 620 191 7 93 chr11 29459188 29459327 -92384529 - B1_Mur2 SINE Alu 0 149 23 9 809 2081 168 98 45 chr11 29459339 29459959 -92383897 + RLTR31_Mm LTR ERVK 1 578 -6 9 809 468 0 0 0 chr11 29459961 29460013 -92383843 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 809 483 191 315 0 chr11 29461018 29461180 -92382676 + B3 SINE B2 1 213 -3 9 809 307 228 106 29 chr11 29461530 29461634 -92382222 - ID_B1 SINE B4 -1 223 112 9 809 217 316 38 0 chr11 29461568 29461647 -92382209 - B1F1 SINE Alu -51 98 17 9 809 27 0 0 0 chr11 29461814 29461841 -92382015 + AT_rich Low_complexity Low_complexity 1 27 0 9 809 311 269 128 0 chr11 29461905 29461983 -92381873 - MTE2a LTR MaLR -79 300 213 9 809 1227 55 0 0 chr11 29462230 29462376 -92381480 - B1_Mm SINE Alu -1 146 1 9 809 474 177 395 0 chr11 29462428 29462575 -92381281 - B3 SINE B2 -11 205 1 9 809 659 298 36 24 chr11 29462587 29462752 -92381104 - B3A SINE B2 -30 168 2 9 809 202 200 0 0 chr11 29462874 29462914 -92380942 + (CTTA)n Simple_repeat Simple_repeat 1 40 0 9 809 461 287 83 14 chr11 29463015 29463160 -92380696 - B4A SINE B4 -132 160 6 9 809 405 0 0 0 chr11 29463976 29464021 -92379835 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 9 809 275 264 0 77 chr11 29464316 29464394 -92379462 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 9 809 285 315 0 14 chr11 29464325 29464399 -92379457 - ID4_ SINE ID -9 74 2 9 809 189 74 0 0 chr11 29464648 29464675 -92379181 + (TTA)n Simple_repeat Simple_repeat 2 28 0 9 809 1941 146 38 0 chr11 29465074 29465389 -92378467 + Lx3A LINE L1 6648 6974 -7 9 809 438 20 0 0 chr11 29465467 29465518 -92378338 + (CTA)n Simple_repeat Simple_repeat 1 51 0 9 809 1177 212 114 49 chr11 29465521 29465888 -92377968 - RMER6A LTR ERVK -365 391 1 9 809 458 231 0 0 chr11 29465933 29466011 -92377845 + ID4 SINE ID 3 80 -3 9 809 226 254 36 0 chr11 29466126 29466181 -92377675 + RSINE1 SINE B4 6 62 -103 9 809 189 0 0 0 chr11 29466427 29466448 -92377408 + (T)n Simple_repeat Simple_repeat 1 21 0 9 809 288 0 0 0 chr11 29466480 29466512 -92377344 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 9 809 1226 22 0 0 chr11 29466512 29466651 -92377205 - B1_Mus2 SINE Alu -8 139 1 9 809 272 238 41 8 chr11 29466680 29466803 -92377053 - Lx9 LINE L1 -23 7621 7495 9 809 6534 150 58 96 chr11 29466824 29468331 -92375525 - ORR1B1-int LTR MaLR -513 1450 1 9 809 1474 133 113 130 chr11 29468331 29468365 -92375491 - ORR1B1 LTR MaLR -17 377 349 9 809 1298 85 10 26 chr11 29468365 29468559 -92375297 - B2_Mm2 SINE B2 -4 191 1 9 809 1474 133 113 130 chr11 29468559 29468867 -92374989 - ORR1B1 LTR MaLR -46 348 41 9 809 254 239 59 15 chr11 29468873 29468941 -92374915 - Lx8 LINE L1 -723 6750 6680 9 809 291 300 38 0 chr11 29468970 29469050 -92374806 - MLT1C LTR MaLR -172 295 213 9 809 273 326 151 11 chr11 29469470 29469563 -92374293 - PB1D10 SINE Alu -11 106 1 9 809 689 261 0 13 chr11 29470754 29470909 -92372947 - RLTR20D LTR ERVK -3 575 423 9 809 861 255 33 73 chr11 29470893 29471193 -92372663 - RLTR20D LTR ERVK -280 288 1 9 809 26 50 0 0 chr11 29472123 29472163 -92371693 + AT_rich Low_complexity Low_complexity 1 40 0 9 809 210 200 0 20 chr11 29472482 29472533 -92371323 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 9 809 213 294 0 0 chr11 29473319 29473370 -92370486 + (CATA)n Simple_repeat Simple_repeat 2 52 0 9 809 716 230 22 0 chr11 29473708 29473847 -92370009 + B1_Mus1 SINE Alu 1 142 -6 9 809 1158 122 0 0 chr11 29473872 29474052 -92369804 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 9 809 198 312 0 0 chr11 29474490 29474586 -92369270 + (CATATA)n Simple_repeat Simple_repeat 3 98 0 9 809 430 311 28 9 chr11 29474662 29474769 -92369087 - PB1D10 SINE Alu -1 116 8 9 809 316 354 31 10 chr11 29474683 29474780 -92369076 - ID_B1 SINE B4 -48 176 78 9 809 831 228 181 24 chr11 29475540 29475872 -92367984 - RLTR40 LTR ERVK -60 757 374 9 809 414 0 0 0 chr11 29475877 29475923 -92367933 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 809 441 0 0 0 chr11 29475923 29475971 -92367885 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 809 471 216 165 28 chr11 29475975 29476127 -92367729 - RLTR40 LTR ERVK -551 266 89 9 809 252 0 0 0 chr11 29476127 29476155 -92367701 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 9 809 471 216 165 28 chr11 29476155 29476178 -92367678 - RLTR40 LTR ERVK -729 88 67 9 809 1220 51 13 0 chr11 29476178 29476313 -92367543 - B2_Mm1a SINE B2 -33 160 1 9 809 390 263 21 0 chr11 29476313 29476401 -92367455 - RLTR40 LTR ERVK -709 108 19 9 809 30 45 0 0 chr11 29476694 29476738 -92367118 + AT_rich Low_complexity Low_complexity 1 44 0 9 809 657 330 27 14 chr11 29477145 29477366 -92366490 + B4 SINE B4 59 282 -10 1 809 1359 85 21 5 chr11 29478430 29478619 -92365237 - B2_Mm2 SINE B2 -3 192 1 1 809 276 362 49 7 chr11 29478619 29478761 -92365095 - L4 LINE RTE -434 1595 1448 1 809 233 204 0 0 chr11 29478943 29478987 -92364869 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 809 323 126 109 16 chr11 29479072 29479158 -92364698 - B1_Mur3 SINE Alu -1 148 9 1 809 198 150 0 0 chr11 29479267 29479307 -92364549 + (T)n Simple_repeat Simple_repeat 1 40 0 1 809 416 267 49 0 chr11 29479570 29479684 -92364172 - PB1D7 SINE Alu 0 120 1 1 809 550 217 224 22 chr11 29479736 29479915 -92363941 - B3 SINE B2 0 216 2 1 809 23 0 0 0 chr11 29479919 29479942 -92363914 + AT_rich Low_complexity Low_complexity 1 23 0 1 809 1089 157 16 27 chr11 29479942 29480125 -92363731 - B3 SINE B2 -25 191 11 1 809 33942 77 8 10 chr11 29480233 29485983 -92357873 + L1_Mus3 LINE L1 420 6133 -505 1 809 4414 14 2 0 chr11 29485987 29486479 -92357377 + MT2_Mm LTR ERVL 1 493 0 1 101 38692 17 14 0 chr11 29486479 29491767 -92352089 + MERVL-int LTR ERVL 1 5360 -125 1 810 390 167 46 35 chr11 29491767 29491854 -92352002 + ORR1A3-int LTR MaLR 553 640 -1323 1 810 302 0 0 0 chr11 29491854 29491892 -92351964 + MERVL-int LTR ERVL 5448 5485 0 1 810 4414 14 2 0 chr11 29491892 29492384 -92351472 + MT2_Mm LTR ERVL 1 493 0 1 810 3625 25 18 7 chr11 29492384 29492822 -92351034 + L1Md_F2 LINE L1 6140 6582 0 1 810 274 272 48 36 chr11 29492918 29493002 -92350854 - RSINE1 SINE B4 -9 156 72 1 810 1925 163 105 23 chr11 29493366 29493755 -92350101 + MTC LTR MaLR 1 421 0 1 810 1068 128 72 0 chr11 29493976 29494156 -92349700 + B2_Mm1t SINE B2 1 193 0 1 810 185 35 69 0 chr11 29494156 29494185 -92349671 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1 810 1014 208 24 5 chr11 29495114 29495322 -92348534 - B3 SINE B2 0 216 5 1 810 584 305 53 0 chr11 29495343 29495494 -92348362 - B3A SINE B2 -37 161 3 1 810 1931 168 176 29 chr11 29495550 29495999 -92347857 + RMER20B LTR ERVK 1 515 -112 1 810 809 134 55 0 chr11 29496064 29496191 -92347665 - B1_Mus2 SINE Alu -13 134 1 1 810 2887 104 53 2 chr11 29496411 29496827 -92347029 - RLTR9B LTR ERVK 0 437 1 1 810 347 94 0 36 chr11 29496847 29496902 -92346954 - ETnERV2-int LTR ERVK -23 7383 7331 1 810 576 258 28 35 chr11 29497109 29497376 -92346480 - ETnERV2-int LTR ERVK -988 6418 6223 1 810 335 200 51 31 chr11 29497376 29497474 -92346382 - ETnERV2-int LTR ERVK -1210 6196 6097 1 810 7027 202 74 76 chr11 29497482 29497557 -92346299 - RMER16-int LTR ERVK -1230 4176 4114 1 810 1248 34 0 0 chr11 29497557 29497704 -92346152 + B1_Mm SINE Alu 1 147 0 1 810 7027 202 74 76 chr11 29497704 29499728 -92344128 - RMER16-int LTR ERVK -1293 4113 2075 1 810 1137 64 0 0 chr11 29499728 29499868 -92343988 + B1_Mm SINE Alu 2 141 -6 1 810 7027 202 74 76 chr11 29499868 29500000 -92343856 - RMER16-int LTR ERVK -3332 2074 1947 1 810 8505 122 66 48 chr11 29500000 29500334 -92343522 - ETnERV2-int LTR ERVK -4399 3007 2698 1 810 1174 68 0 0 chr11 29500334 29500481 -92343375 - B1_Mm SINE Alu 0 147 1 2 810 8505 122 66 48 chr11 29500481 29500679 -92343177 - ETnERV2-int LTR ERVK -4709 2697 2480 1 810 252 0 0 0 chr11 29500679 29500707 -92343149 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 810 8505 122 66 48 chr11 29500707 29501728 -92342128 - ETnERV2-int LTR ERVK -4927 2479 1427 1 810 186 43 0 0 chr11 29502625 29502648 -92341208 + (GGA)n Simple_repeat Simple_repeat 3 25 0 4 810 1336 45 11 0 chr11 29502649 29502825 -92341031 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 810 1021 149 132 113 chr11 29502830 29503087 -92340769 - RLTR45-int LTR ERVK -4917 2327 2066 6 810 25 0 0 0 chr11 29503095 29503120 -92340736 + AT_rich Low_complexity Low_complexity 1 25 0 7 810 436 279 85 82 chr11 29503140 29503445 -92340411 - ETnERV2-int LTR ERVK -3005 309 4 1 810 3214 92 7 2 chr11 29503447 29503882 -92339974 - RLTR9B LTR ERVK 0 437 1 1 810 350 292 44 63 chr11 29503910 29504115 -92339741 - LTR16A LTR ERVL -8 443 243 8 810 355 224 13 0 chr11 29505015 29505091 -92338765 - ID4 SINE ID 0 83 7 9 810 608 259 52 23 chr11 29506401 29506575 -92337281 + B3A SINE B2 4 182 -16 1 810 351 288 125 29 chr11 29506650 29506786 -92337070 + B1F1 SINE Alu 1 149 0 1 810 1355 194 86 4 chr11 29507155 29507380 -92336476 + MTD LTR MaLR 103 346 -73 1 810 279 0 0 0 chr11 29507380 29507411 -92336445 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 810 1355 194 86 4 chr11 29507411 29507465 -92336391 + MTD LTR MaLR 347 405 -14 1 810 190 309 82 73 chr11 29507808 29508014 -92335842 + MIRc SINE MIR 10 217 -51 1 810 812 108 8 0 chr11 29509456 29509586 -92334270 + (TCC)n Simple_repeat Simple_repeat 3 133 0 1 810 204 40 0 0 chr11 29509588 29509613 -92334243 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 810 603 170 0 0 chr11 29509614 29509720 -92334136 - B1_Mur3 SINE Alu -8 141 36 1 810 711 35 0 0 chr11 29509745 29509831 -92334025 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 1 810 1326 78 0 0 chr11 29510526 29510706 -92333150 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 810 545 94 0 12 chr11 29510706 29510792 -92333064 + (TCC)n Simple_repeat Simple_repeat 3 87 0 2 810 1025 58 0 0 chr11 29510795 29510933 -92332923 - B1_Mus2 SINE Alu 0 147 10 2 810 506 180 213 0 chr11 29512183 29512305 -92331551 + B1_Mur1 SINE Alu 1 148 -1 2 810 970 239 5 19 chr11 29513557 29513770 -92330086 - B3 SINE B2 -5 211 2 2 810 1107 259 0 96 chr11 29515038 29515392 -92328464 - MTE2a LTR MaLR -49 330 11 2 810 1021 122 10 0 chr11 29515571 29515776 -92328080 + (TC)n Simple_repeat Simple_repeat 1 207 0 2 810 904 146 7 0 chr11 29515776 29515920 -92327936 - B1_Mus1 SINE Alu -2 146 2 2 810 391 167 529 0 chr11 29516048 29516186 -92327670 + B3 SINE B2 1 211 -5 2 810 207 0 0 0 chr11 29516201 29516224 -92327632 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 2 810 564 229 62 62 chr11 29516706 29516901 -92326955 - B3A SINE B2 0 198 4 2 810 409 160 27 0 chr11 29517329 29517404 -92326452 + B3A SINE B2 1 77 -121 3 810 1443 266 101 27 chr11 29517950 29518464 -92325392 - Lx8 LINE L1 -3 7470 6919 3 810 273 294 15 0 chr11 29518868 29518936 -92324920 - ID4_ SINE ID -13 70 2 3 810 230 356 9 47 chr11 29518946 29519052 -92324804 - PB1D10 SINE Alu -5 112 11 3 810 597 264 69 34 chr11 29519592 29519767 -92324089 - B3A SINE B2 0 216 36 3 810 1958 236 47 47 chr11 29519783 29520272 -92323584 - Lx5 LINE L1 -3 7047 6559 3 810 180 0 0 0 chr11 29520447 29520467 -92323389 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 810 348 253 84 42 chr11 29520512 29520607 -92323249 - RSINE1 SINE B4 -47 118 20 3 810 719 250 111 11 chr11 29520679 29520869 -92322987 + B3 SINE B2 2 210 -6 3 810 524 223 68 23 chr11 29520896 29521029 -92322827 + B1_Mur3 SINE Alu 1 139 -10 3 810 226 235 0 19 chr11 29521064 29521116 -92322740 + ID4_ SINE ID 9 59 -24 4 810 623 275 59 70 chr11 29521117 29521422 -92322434 + MLT1C LTR MaLR 188 505 0 4 810 187 298 114 82 chr11 29523504 29523749 -92320107 + L2b LINE L2 2945 3197 -178 4 810 1202 41 0 7 chr11 29523972 29524120 -92319736 + B1_Mus2 SINE Alu 1 147 0 4 810 454 232 11 0 chr11 29524199 29524294 -92319562 + B1F SINE Alu 3 98 -51 4 810 821 94 0 16 chr11 29524336 29524348 -92319508 - B1_Mus1 SINE Alu -21 127 116 4 810 489 34 0 0 chr11 29524348 29524407 -92319449 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 810 821 94 0 16 chr11 29524407 29524523 -92319333 - B1_Mus1 SINE Alu -33 115 1 4 810 272 333 0 0 chr11 29525554 29525632 -92318224 - ID4 SINE ID -4 79 2 4 810 304 265 59 39 chr11 29525632 29525734 -92318122 - PB1D10 SINE Alu -6 111 8 4 810 419 271 53 105 chr11 29525732 29525849 -92318007 - MLT2B2 LTR ERVL -36 531 378 4 810 2256 146 68 3 chr11 29525849 29526219 -92317637 - ORR1B1 LTR MaLR 0 394 1 5 810 419 345 155 18 chr11 29526219 29526487 -92317369 - MLT2B2 LTR ERVL -138 377 62 4 810 399 328 148 36 chr11 29527232 29527536 -92316320 + LTR16A LTR ERVL 6 343 -108 5 810 678 274 38 0 chr11 29527935 29528121 -92315735 + B3 SINE B2 19 211 -5 5 810 3480 239 135 28 chr11 29528406 29529293 -92314563 - Lx8 LINE L1 -16 7457 6466 5 810 477 0 0 0 chr11 29529293 29529346 -92314510 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 810 3480 239 135 28 chr11 29529346 29529457 -92314399 - Lx8 LINE L1 -1008 6465 6340 5 810 706 152 121 0 chr11 29529457 29529589 -92314267 - B1_Mur4 SINE Alu 0 150 3 5 810 3480 239 135 28 chr11 29529589 29529601 -92314255 - Lx8 LINE L1 -1134 6339 6333 5 810 195 129 0 0 chr11 29529601 29529632 -92314224 + (ATG)n Simple_repeat Simple_repeat 2 32 0 5 810 3480 239 135 28 chr11 29529632 29529659 -92314197 - Lx8 LINE L1 -1141 6332 6307 5 810 393 22 0 0 chr11 29530165 29530211 -92313645 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 810 1231 41 7 0 chr11 29530230 29530375 -92313481 - B1_Mm SINE Alu 0 147 2 5 810 596 249 228 15 chr11 29530980 29531318 -92312538 - MER45R DNA Tip100 -3 1578 1169 5 810 237 289 40 0 chr11 29531647 29531723 -92312133 - PB1D10 SINE Alu 0 117 39 6 810 855 335 135 57 chr11 29531733 29532457 -92311399 - MER45R DNA Tip100 -800 781 1 5 810 250 306 168 70 chr11 29533091 29533407 -92310449 + ORR1E LTR MaLR 2 348 -11 6 810 1555 67 0 5 chr11 29533537 29533733 -92310123 + B2_Mm2 SINE B2 1 195 0 6 810 219 231 0 0 chr11 29533950 29533989 -92309867 + polypyrimidine Low_complexity Low_complexity 2 40 0 6 810 212 301 135 52 chr11 29534257 29534450 -92309406 - L2a LINE L2 0 3426 3218 6 810 557 161 26 0 chr11 29534844 29534947 -92308909 + B1_Mur1 SINE Alu 18 137 -12 6 810 243 0 0 0 chr11 29534947 29534974 -92308882 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 6 810 511 275 51 0 chr11 29534984 29535122 -92308734 - RSINE1 SINE B4 -5 160 16 6 810 580 132 40 0 chr11 29535130 29535282 -92308574 + CT-rich Low_complexity Low_complexity 1 158 0 6 810 206 32 0 31 chr11 29535288 29535304 -92308552 + (TTTA)n Simple_repeat Simple_repeat 1 16 0 6 810 1168 68 0 7 chr11 29535304 29535452 -92308404 - B1_Mus2 SINE Alu 0 147 1 7 810 206 32 0 31 chr11 29535452 29535467 -92308389 + (TTTA)n Simple_repeat Simple_repeat 2 16 0 7 810 415 218 19 65 chr11 29535497 29535605 -92308251 - PB1D10 SINE Alu -13 104 2 7 810 463 245 32 38 chr11 29535855 29536012 -92307844 + RMER15 LTR ERVL 408 563 -12 7 810 1211 55 0 0 chr11 29536014 29536160 -92307696 + B1_Mus2 SINE Alu 2 147 0 7 810 1678 172 96 6 chr11 29537923 29538256 -92305600 - ORR1B2 LTR MaLR 0 367 5 7 810 1121 135 166 0 chr11 29539386 29539579 -92304277 - URR1B DNA MER1_type 0 225 1 7 810 489 62 0 0 chr11 29539594 29539659 -92304197 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 810 1183 166 150 0 chr11 29539933 29540180 -92303676 - ORR1B2 LTR MaLR 0 367 84 7 810 1590 141 156 14 chr11 29540203 29540491 -92303365 - ORR1A4 LTR MaLR 0 329 1 7 810 450 0 0 0 chr11 29540736 29540786 -92303070 + (TA)n Simple_repeat Simple_repeat 1 50 0 8 810 277 259 0 18 chr11 29540797 29540852 -92303004 - ID2 SINE ID -20 63 10 8 810 2754 130 7 14 chr11 29541542 29541964 -92301892 - MTC LTR MaLR -2 419 1 8 810 2349 179 73 16 chr11 29542204 29542708 -92301148 + RMER16 LTR ERVK 1 533 0 8 810 239 312 52 30 chr11 29542718 29542818 -92301038 - MIRc SINE MIR -45 163 65 8 810 234 0 0 0 chr11 29542874 29542900 -92300956 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 810 330 288 16 41 chr11 29542913 29543036 -92300820 - RSINE1 SINE B4 -44 121 2 8 810 363 136 0 0 chr11 29543186 29543245 -92300611 + (GGA)n Simple_repeat Simple_repeat 3 61 0 8 810 337 176 67 29 chr11 29543253 29543358 -92300498 + B1F SINE Alu 41 149 0 8 810 292 284 0 69 chr11 29543588 29543675 -92300181 - RSINE1 SINE B4 -83 82 2 8 810 321 279 114 0 chr11 29545349 29545454 -92298402 + PB1D10 SINE Alu 10 125 -2 9 810 21 36 0 0 chr11 29547111 29547139 -92296717 + AT_rich Low_complexity Low_complexity 1 28 0 9 810 905 153 12 0 chr11 29548688 29548858 -92294998 + GA-rich Low_complexity Low_complexity 3 174 0 9 810 272 300 19 0 chr11 29549052 29549159 -92294697 - PB1D10 SINE Alu -8 141 29 9 810 406 0 49 33 chr11 29549527 29549588 -92294268 + (GGGAA)n Simple_repeat Simple_repeat 4 65 0 9 810 393 271 28 14 chr11 29549711 29549853 -92294003 + B1F SINE Alu 5 148 -1 9 810 673 297 17 25 chr11 29550041 29550276 -92293580 + MER58B DNA MER1_type 26 258 -83 9 810 361 121 0 0 chr11 29550458 29550516 -92293340 + L1Md_F2 LINE L1 6513 6570 -12 9 810 1182 61 0 0 chr11 29550522 29550669 -92293187 + B1_Mus2 SINE Alu 1 147 0 9 810 22 0 0 0 chr11 29550669 29550691 -92293165 + AT_rich Low_complexity Low_complexity 1 22 0 9 810 573 124 0 0 chr11 29551067 29551164 -92292692 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 810 22 35 0 0 chr11 29551410 29551439 -92292417 + AT_rich Low_complexity Low_complexity 1 29 0 1 810 5350 138 4 42 chr11 29552143 29552639 -92291217 + Lx LINE L1 4965 5455 -428 1 810 1422 82 16 0 chr11 29552639 29552822 -92291034 + B2_Mm2 SINE B2 3 188 -7 1 810 5350 138 4 42 chr11 29552822 29553237 -92290619 + Lx LINE L1 5456 5842 -41 1 810 407 175 36 47 chr11 29553251 29553443 -92290413 + RMER17C LTR ERVK 88 277 -133 1 810 390 104 30 0 chr11 29553463 29553530 -92290326 + Lx LINE L1 5813 5881 -1127 1 810 2835 71 2 21 chr11 29553530 29553685 -92290171 + BGLII LTR ERVK 1 155 -266 1 810 2011 192 68 95 chr11 29553685 29554233 -92289623 - RMER16 LTR ERVK 0 533 1 1 810 2835 71 2 21 chr11 29554233 29554506 -92289350 + BGLII LTR ERVK 156 421 0 1 810 4881 101 57 11 chr11 29554506 29555249 -92288607 + Lx LINE L1 5876 6652 -2 1 810 6401 125 128 6 chr11 29555347 29556340 -92287516 + RLTR13D3 LTR ERVK 1 1114 0 1 810 364 350 37 6 chr11 29556979 29557143 -92286713 - MIR SINE MIR -29 233 65 1 810 455 315 82 62 chr11 29557238 29557590 -92286266 + L1MC5 LINE L1 6673 7031 -930 1 810 4583 43 2 8 chr11 29557657 29558172 -92285684 + LTRIS3 LTR ERV1 1 512 0 1 810 585 217 146 8 chr11 29558565 29558695 -92285161 - B3A SINE B2 -49 149 2 1 810 569 273 14 7 chr11 29558997 29559137 -92284719 - B1F2 SINE Alu -7 142 2 1 810 22 0 0 0 chr11 29559223 29559245 -92284611 + AT_rich Low_complexity Low_complexity 1 22 0 1 810 1677 96 21 8 chr11 29559253 29559494 -92284362 - L1_Mus4 LINE L1 -6 6630 6387 1 810 196 268 0 0 chr11 29559665 29559706 -92284150 - L2c LINE L2 -13 3374 3334 1 810 468 0 0 0 chr11 29560338 29560390 -92283466 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 810 234 344 16 0 chr11 29560583 29560647 -92283209 + ID4_ SINE ID 5 69 -14 1 810 226 358 12 24 chr11 29560708 29560791 -92283065 + B3 SINE B2 50 131 -85 1 810 207 353 76 0 chr11 29560868 29560987 -92282869 + L2b LINE L2 3038 3165 -210 1 810 24 0 0 0 chr11 29561383 29561407 -92282449 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 1015 222 160 40 chr11 29561562 29561937 -92281919 + L1MC3 LINE L1 7261 7680 -105 1 810 216 0 0 0 chr11 29562297 29562321 -92281535 + (CTTG)n Simple_repeat Simple_repeat 3 26 0 1 810 695 273 97 97 chr11 29562455 29562775 -92281081 - MLT1A LTR MaLR -32 342 23 1 810 330 87 0 0 chr11 29562812 29562858 -92280998 + (T)n Simple_repeat Simple_repeat 1 46 0 1 810 1284 48 0 0 chr11 29562858 29563005 -92280851 - B1_Mm SINE Alu 0 147 1 1 810 1440 91 5 5 chr11 29563168 29563355 -92280501 + B2_Mm2 SINE B2 1 187 -8 1 810 210 150 0 0 chr11 29563754 29563794 -92280062 + (T)n Simple_repeat Simple_repeat 1 40 0 1 810 1118 44 74 0 chr11 29563807 29563942 -92279914 - B1_Mm SINE Alu -2 145 1 1 810 197 252 222 24 chr11 29564463 29564589 -92279267 + MIR3 SINE MIR 43 193 -15 1 810 24 0 0 0 chr11 29565280 29565304 -92278552 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 563 254 15 23 chr11 29565914 29566047 -92277809 - RSINE1 SINE B4 -27 138 7 1 810 308 296 37 0 chr11 29566576 29566684 -92277172 + MER20 DNA MER1_type 45 156 -63 1 810 1724 21 10 10 chr11 29566742 29566934 -92276922 + B2_Mm1a SINE B2 2 193 0 1 810 1056 96 7 0 chr11 29566961 29567107 -92276749 + B1_Mus2 SINE Alu 1 147 0 1 810 1292 258 121 12 chr11 29567772 29568203 -92275653 + RCHARR1 DNA MER1_type 4 481 -493 1 810 825 80 182 8 chr11 29568213 29568339 -92275517 - B1_Mus1 SINE Alu 0 148 1 1 810 35 0 0 0 chr11 29568340 29568375 -92275481 + AT_rich Low_complexity Low_complexity 1 35 0 1 810 959 225 110 36 chr11 29568436 29568856 -92275000 + RCHARR1 DNA MER1_type 467 974 0 1 810 660 111 0 0 chr11 29568866 29568965 -92274891 + (CA)n Simple_repeat Simple_repeat 1 99 0 1 810 1156 51 0 7 chr11 29569368 29569506 -92274350 + B1_Mus1 SINE Alu 2 138 -10 1 810 488 227 128 49 chr11 29569690 29569894 -92273962 - RMER21B LTR ERV1 -275 567 348 1 810 252 77 0 0 chr11 29569894 29569933 -92273923 + (T)n Simple_repeat Simple_repeat 1 39 0 1 810 686 307 94 16 chr11 29570961 29571216 -92272640 + B4A SINE B4 14 288 -4 1 810 635 274 154 26 chr11 29571732 29571912 -92271944 + ID_B1 SINE B4 4 210 -14 1 810 216 97 0 0 chr11 29571912 29571943 -92271913 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 810 635 274 154 26 chr11 29571943 29571957 -92271899 + ID_B1 SINE B4 211 223 -1 1 810 1191 81 0 20 chr11 29572101 29572252 -92271604 + B1_Mus1 SINE Alu 1 148 0 1 810 265 286 12 38 chr11 29572294 29572374 -92271482 + ID4_ SINE ID 2 79 -4 1 810 1275 61 0 0 chr11 29572412 29572559 -92271297 + B1_Mm SINE Alu 1 147 0 1 810 731 221 20 20 chr11 29572593 29572728 -92271128 + B1_Mur4 SINE Alu 3 137 -13 1 810 1302 41 0 0 chr11 29572728 29572875 -92270981 + B1_Mus2 SINE Alu 1 147 0 1 810 731 221 20 20 chr11 29572875 29572887 -92270969 + B1_Mur4 SINE Alu 138 149 -1 1 810 375 76 50 12 chr11 29572899 29572979 -92270877 + (CAAAA)n Simple_repeat Simple_repeat 2 84 0 1 810 558 275 22 30 chr11 29573013 29573148 -92270708 - RSINE1 SINE B4 -30 135 2 1 810 509 252 82 22 chr11 29573703 29573837 -92270019 - RSINE1 SINE B4 -12 153 12 1 810 364 261 133 42 chr11 29573969 29574089 -92269767 + B1F SINE Alu 4 134 -15 1 810 24 0 0 0 chr11 29574155 29574179 -92269677 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 600 259 30 41 chr11 29574723 29574920 -92268936 - B3A SINE B2 -3 195 1 1 810 226 368 11 0 chr11 29575239 29575326 -92268530 - L2 LINE L2 -2041 1378 1291 1 810 1359 64 29 0 chr11 29575590 29575747 -92268109 + B2_Mm1a SINE B2 2 160 -33 1 810 186 43 0 0 chr11 29575747 29575770 -92268086 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 810 1359 64 29 0 chr11 29575770 29575785 -92268071 + B2_Mm1a SINE B2 161 178 -15 1 810 752 279 107 33 chr11 29576241 29576512 -92267344 - B4A SINE B4 0 292 2 1 810 201 61 0 83 chr11 29576639 29576657 -92267199 + (T)n Simple_repeat Simple_repeat 1 18 0 1 810 1301 41 0 0 chr11 29576657 29576803 -92267053 - B1_Mm SINE Alu 0 147 2 1 810 201 61 0 83 chr11 29576803 29576820 -92267036 + (T)n Simple_repeat Simple_repeat 1 15 0 1 810 1206 167 11 5 chr11 29576845 29577032 -92266824 - B3 SINE B2 -27 189 2 1 810 327 313 81 35 chr11 29577040 29577212 -92266644 - HAL1 LINE L1 -1540 967 788 1 810 3055 53 245 2 chr11 29577692 29578104 -92265752 - RLTR1B LTR ERV1 0 512 1 1 810 888 223 63 63 chr11 29578332 29578538 -92265318 - B3 SINE B2 -10 206 1 1 810 906 227 86 0 chr11 29578886 29579084 -92264772 + B3 SINE B2 2 216 0 1 810 2107 278 98 48 chr11 29579091 29579235 -92264621 - Lx9 LINE L1 -4 7640 7497 1 810 426 39 0 0 chr11 29579235 29579287 -92264569 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 810 2107 278 98 48 chr11 29579287 29579859 -92263997 - Lx9 LINE L1 -148 7496 6883 1 810 2458 113 98 47 chr11 29579859 29580268 -92263588 - RLTR23 LTR ERV1 0 430 1 1 810 2107 278 98 48 chr11 29580268 29580400 -92263456 - Lx9 LINE L1 -762 6882 6750 1 810 24 0 0 0 chr11 29580400 29580424 -92263432 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 423 0 0 0 chr11 29580489 29580536 -92263320 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 810 292 149 10 111 chr11 29580547 29580619 -92263237 - B2_Mm2 SINE B2 -102 114 47 1 810 1163 128 47 0 chr11 29580632 29580804 -92263052 - B2_Mm1t SINE B2 -13 180 1 1 810 1110 262 113 12 chr11 29580855 29581191 -92262665 - MTD LTR MaLR 0 370 1 1 810 4553 238 76 45 chr11 29581194 29581273 -92262583 - MTD-int LTR MaLR -1 1369 1284 1 810 1005 127 28 0 chr11 29581273 29581415 -92262441 + B1_Mur4 SINE Alu 5 150 0 1 810 4553 238 76 45 chr11 29581415 29582631 -92261225 - MTD-int LTR MaLR -87 1283 33 1 810 1178 275 53 92 chr11 29582633 29582798 -92261058 - MTD LTR MaLR 0 419 260 1 810 1207 82 0 0 chr11 29582798 29582944 -92260912 + B1_Mus2 SINE Alu 2 147 0 1 810 1178 275 53 92 chr11 29582944 29583214 -92260642 - MTD LTR MaLR -160 259 1 1 810 224 275 0 0 chr11 29583214 29583254 -92260602 - ID4_ SINE ID -42 41 2 1 810 2135 138 151 12 chr11 29583760 29584104 -92259752 + ORR1B1 LTR MaLR 1 392 -2 1 810 627 14 0 0 chr11 29584177 29584249 -92259607 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 810 299 295 195 8 chr11 29584282 29584405 -92259451 - B4A SINE B4 -5 287 142 1 810 2952 81 62 10 chr11 29584421 29584821 -92259035 + BGLII LTR ERVK 1 421 0 1 810 314 218 38 13 chr11 29584839 29584918 -92258938 - B4A SINE B4 -204 88 8 1 810 2487 85 31 0 chr11 29585621 29585938 -92257918 - ORR1A2 LTR MaLR 0 327 1 1 810 360 0 0 0 chr11 29586000 29586040 -92257816 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 810 232 262 47 59 chr11 29586122 29586207 -92257649 - ID_B1 SINE B4 -11 213 130 1 810 254 288 0 0 chr11 29586424 29586483 -92257373 - B1F1 SINE Alu -90 59 1 1 810 1298 21 0 0 chr11 29586698 29586838 -92257018 + B1_Mm SINE Alu 2 141 -6 1 810 624 27 0 0 chr11 29586846 29586920 -92256936 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 1 810 750 255 43 9 chr11 29586966 29587176 -92256680 - ID_B1 SINE B4 -6 218 2 1 810 2184 108 16 0 chr11 29587369 29587683 -92256173 + ORR1A2 LTR MaLR 1 319 -8 1 810 432 247 59 20 chr11 29587822 29587975 -92255881 - L1MA4 LINE L1 -377 5923 5765 1 810 224 278 44 11 chr11 29588068 29588159 -92255697 + GA-rich Low_complexity Low_complexity 3 96 0 1 810 1230 61 0 7 chr11 29588441 29588589 -92255267 + B1_Mus1 SINE Alu 2 148 0 1 810 927 74 0 0 chr11 29589921 29590042 -92253814 - B1_Mus1 SINE Alu 0 148 28 1 810 247 203 68 0 chr11 29590050 29590109 -92253747 - L1MA4 LINE L1 -530 5770 5708 1 810 346 245 82 41 chr11 29590821 29590919 -92252937 - MLT1H2 LTR MaLR -10 539 393 1 810 722 258 40 40 chr11 29591005 29591207 -92252649 - B3 SINE B2 -14 202 1 1 810 232 212 106 0 chr11 29591259 29591310 -92252546 - B3A SINE B2 -100 98 43 1 810 498 244 197 8 chr11 29591466 29591710 -92252146 - MER33 DNA MER1_type -41 283 2 1 810 531 0 0 0 chr11 29591836 29591895 -92251961 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1 810 1166 111 0 0 chr11 29591895 29592039 -92251817 - B1_Mus2 SINE Alu -3 144 1 2 810 22 0 0 0 chr11 29593234 29593256 -92250600 + GC_rich Low_complexity Low_complexity 1 22 0 2 810 264 120 0 0 chr11 29593284 29593334 -92250522 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2 810 34 42 0 0 chr11 29593439 29593487 -92250369 + GC_rich Low_complexity Low_complexity 1 48 0 2 810 414 0 0 0 chr11 29593993 29594039 -92249817 + (GGCTG)n Simple_repeat Simple_repeat 2 47 0 2 810 1690 47 16 0 chr11 29595670 29595862 -92247994 - B2_Mm2 SINE B2 0 195 1 2 810 194 279 0 0 chr11 29595940 29595983 -92247873 - L2b LINE L2 -318 3057 3015 2 810 269 260 40 27 chr11 29597553 29597628 -92246228 + ID2 SINE ID 7 82 -1 2 810 293 289 148 19 chr11 29597698 29597878 -92245978 + Tigger7 DNA MER2_type 1 198 -2293 2 810 288 299 50 14 chr11 29597963 29598102 -92245754 + Tigger7 DNA MER2_type 2342 2485 -6 2 810 324 130 0 0 chr11 29598108 29598154 -92245702 + Tigger7 DNA MER2_type 298 343 -2148 2 810 309 236 101 0 chr11 29598150 29598239 -92245617 + Tigger7 DNA MER2_type 2352 2449 -42 2 810 327 373 60 57 chr11 29598286 29598587 -92245269 - L1MC LINE L1 -2111 5771 5470 2 810 1063 191 72 0 chr11 29598762 29598956 -92244900 - B3 SINE B2 -7 209 2 2 810 1234 69 7 0 chr11 29599073 29599218 -92244638 + B1_Mus2 SINE Alu 1 146 -1 2 810 182 62 0 30 chr11 29599219 29599252 -92244604 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 2 810 25 51 0 0 chr11 29599572 29599611 -92244245 + AT_rich Low_complexity Low_complexity 1 39 0 2 810 351 0 0 0 chr11 29599647 29599686 -92244170 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 810 659 164 35 26 chr11 29599695 29599808 -92244048 - PB1D9 SINE Alu -6 114 1 2 810 265 82 61 0 chr11 29600128 29600177 -92243679 - B2_Mm2 SINE B2 -7 188 137 2 810 342 58 115 0 chr11 29600167 29600225 -92243631 - B2_Mm2 SINE B2 -102 114 47 2 810 983 74 37 0 chr11 29600253 29600388 -92243468 - B2_Mm1t SINE B2 -14 179 40 2 810 395 346 48 48 chr11 29600378 29600589 -92243267 - LTR40a LTR ERVL -246 216 2 2 810 243 208 0 0 chr11 29600621 29600674 -92243182 - L1MC LINE L1 -1694 4452 4400 2 810 715 203 32 0 chr11 29600696 29600819 -92243037 + B1_Mur1 SINE Alu 1 127 -22 2 810 245 233 28 55 chr11 29600822 29600931 -92242925 - L1M5 LINE L1 -1785 4361 4256 2 810 608 174 0 8 chr11 29601554 29601676 -92242180 + CT-rich Low_complexity Low_complexity 1 121 0 2 810 205 339 76 25 chr11 29602227 29602345 -92241511 - MIRb SINE MIR -99 169 46 2 810 255 125 0 0 chr11 29602765 29602805 -92241051 + (T)n Simple_repeat Simple_repeat 1 40 0 2 810 216 0 0 0 chr11 29603206 29603230 -92240626 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 810 856 257 79 115 chr11 29603250 29603641 -92240215 + MTE2a LTR MaLR 1 377 -2 2 810 1299 41 0 7 chr11 29603880 29604029 -92239827 - B1_Mus1 SINE Alu 0 148 1 2 810 214 316 0 34 chr11 29604032 29604091 -92239765 - B1F SINE Alu -90 59 3 2 810 198 0 0 0 chr11 29604257 29604279 -92239577 + (T)n Simple_repeat Simple_repeat 1 22 0 2 810 580 324 158 16 chr11 29604520 29604837 -92239019 - MLT1A LTR MaLR 0 374 13 2 810 451 208 129 31 chr11 29606032 29606217 -92237639 - L1MA6 LINE L1 0 6297 6066 2 810 859 228 13 75 chr11 29608913 29609141 -92234715 + B3 SINE B2 1 214 -2 2 810 983 156 0 58 chr11 29609627 29609818 -92234038 - B2_Mm2 SINE B2 -14 181 2 2 810 220 324 13 66 chr11 29610798 29610811 -92233045 - ID2 SINE ID -10 73 2 2 810 246 271 0 63 chr11 29610811 29610874 -92232982 - ID SINE ID -164 60 2 2 810 224 282 42 14 chr11 29611340 29611412 -92232444 + ID2 SINE ID 1 74 -9 2 810 244 336 111 9 chr11 29611425 29611533 -92232323 + B4A SINE B4 106 224 -68 2 810 314 323 63 16 chr11 29611717 29611843 -92232013 - L2 LINE L2 -2817 602 471 2 810 1238 27 0 70 chr11 29611873 29612030 -92231826 - B1_Mm SINE Alu 0 147 2 2 810 267 278 134 0 chr11 29612541 29612638 -92231218 - PB1D9 SINE Alu -10 110 1 2 810 366 303 75 14 chr11 29612638 29612707 -92231149 - B4A SINE B4 -202 90 13 2 810 804 166 79 7 chr11 29612802 29612942 -92230914 - B1_Mur4 SINE Alu 0 150 1 2 810 819 145 15 8 chr11 29613025 29613157 -92230699 + B1_Mus1 SINE Alu 16 148 0 2 810 1748 214 60 37 chr11 29613493 29613896 -92229960 - MT2A LTR ERVL -72 461 50 2 810 564 203 37 22 chr11 29613903 29614039 -92229817 - B3 SINE B2 -6 210 73 2 810 1096 75 0 27 chr11 29614057 29614207 -92229649 - B1_Mm SINE Alu 0 147 2 2 810 374 268 70 47 chr11 29614251 29614380 -92229476 - B1_Mur1 SINE Alu -9 140 9 2 810 512 288 27 39 chr11 29614384 29614641 -92229215 - L1_Mur3 LINE L1 -1548 4332 4079 2 810 249 57 0 0 chr11 29615270 29615305 -92228551 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 810 209 196 20 0 chr11 29615917 29615968 -92227888 + T-rich Low_complexity Low_complexity 1 52 0 2 810 414 0 0 0 chr11 29615995 29616041 -92227815 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2 810 246 233 0 0 chr11 29616046 29616106 -92227750 + GA-rich Low_complexity Low_complexity 2 61 0 2 810 360 284 39 30 chr11 29616204 29616332 -92227524 - PB1D9 SINE Alu -22 127 1 2 810 1124 77 28 7 chr11 29616414 29616557 -92227299 + B1_Mus1 SINE Alu 3 148 0 2 810 360 0 0 0 chr11 29619607 29619647 -92224209 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 811 957 186 80 35 chr11 29623798 29623998 -92219858 + B3 SINE B2 8 216 0 2 811 1250 69 100 0 chr11 29624284 29624444 -92219412 - B2_Mm2 SINE B2 -19 176 1 2 811 258 105 0 0 chr11 29624623 29624661 -92219195 + (T)n Simple_repeat Simple_repeat 1 38 0 2 811 598 286 24 6 chr11 29625727 29625892 -92217964 - B3 SINE B2 -9 207 40 2 811 447 204 155 24 chr11 29625906 29626112 -92217744 - L1M4 LINE L1 -894 5252 5020 2 811 436 308 106 24 chr11 29626138 29626261 -92217595 - RSINE1 SINE B4 -28 137 5 2 811 237 326 56 11 chr11 29626347 29626437 -92217419 - B3A SINE B2 -27 171 78 2 811 290 273 0 0 chr11 29626650 29626716 -92217140 - PB1D10 SINE Alu 0 117 52 2 811 966 290 177 40 chr11 29626716 29627697 -92216159 - L1M4 LINE L1 -1387 4759 3657 2 811 482 265 279 31 chr11 29628325 29628551 -92215305 - B4 SINE B4 -9 283 2 2 811 253 263 136 34 chr11 29628771 29628790 -92215066 - B1F SINE Alu -1 148 19 2 811 274 333 40 30 chr11 29628790 29628889 -92214967 - ID_B1 SINE B4 -25 199 100 2 811 787 250 13 0 chr11 29628984 29629136 -92214720 + RSINE1 SINE B4 3 156 -9 2 811 2526 163 36 15 chr11 29629264 29629676 -92214180 + MTC LTR MaLR 1 421 0 2 811 241 345 120 8 chr11 29630226 29630343 -92213513 - MIR SINE MIR -63 145 16 2 811 1149 44 72 7 chr11 29630797 29630935 -92212921 - B1_Mus1 SINE Alu -1 147 1 2 811 299 333 41 59 chr11 29631136 29631305 -92212551 - MIR SINE MIR -66 196 31 2 811 1100 114 16 88 chr11 29631483 29631675 -92212181 - B2_Mm2 SINE B2 -17 178 1 2 811 282 296 189 16 chr11 29631910 29632037 -92211819 - B1F1 SINE Alu 0 149 1 2 811 1156 107 83 22 chr11 29633086 29633267 -92210589 - B2_Mm2 SINE B2 -2 193 2 2 811 24 0 0 0 chr11 29634346 29634370 -92209486 + AT_rich Low_complexity Low_complexity 1 24 0 2 811 21 0 0 0 chr11 29634595 29634616 -92209240 + AT_rich Low_complexity Low_complexity 1 21 0 2 811 327 315 152 14 chr11 29634634 29634779 -92209077 + B4 SINE B4 2 166 -126 2 811 511 257 61 9 chr11 29636103 29636217 -92207639 - PB1D7 SINE Alu 0 120 1 2 811 2512 41 7 0 chr11 29636851 29637141 -92206715 + L1Md_F2 LINE L1 6279 6570 -12 2 811 356 279 0 12 chr11 29637364 29637444 -92206412 + PB1D9 SINE Alu 2 80 -40 2 811 575 184 19 0 chr11 29638400 29638503 -92205353 + B1_Mus2 SINE Alu 43 147 0 2 811 260 252 0 169 chr11 29638735 29638859 -92204997 - MER5B DNA MER1_type -1 177 75 2 811 341 43 21 0 chr11 29638942 29638989 -92204867 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 2 811 1299 211 199 23 chr11 29639417 29640052 -92203804 - RMER1B Other Other -4 1026 91 2 811 195 42 0 0 chr11 29641440 29641464 -92202392 + (T)n Simple_repeat Simple_repeat 1 24 0 2 811 830 62 0 9 chr11 29648296 29648410 -92195446 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 2 811 1190 76 7 0 chr11 29648418 29648563 -92195293 - B1_Mus1 SINE Alu -2 146 1 2 811 489 268 74 47 chr11 29648825 29648974 -92194882 - RSINE1 SINE B4 -7 158 6 2 811 201 250 0 0 chr11 29649121 29649161 -92194695 + MIRc SINE MIR 116 155 -113 2 811 213 211 69 17 chr11 29649144 29649202 -92194654 + MIRb SINE MIR 187 247 -21 2 811 360 241 234 83 chr11 29650861 29651006 -92192850 + ID_B1 SINE B4 16 182 -42 2 811 524 258 163 8 chr11 29651398 29651644 -92192212 + L1MB4 LINE L1 5896 6179 -1 2 811 181 245 102 0 chr11 29652145 29652194 -92191662 + L4 LINE RTE 624 677 -1352 2 811 234 0 0 0 chr11 29652555 29652581 -92191275 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 811 688 286 42 37 chr11 29653308 29653328 -92190528 - B3A SINE B2 -6 192 176 2 811 318 115 0 0 chr11 29653328 29653380 -92190476 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 811 688 286 42 37 chr11 29653380 29653548 -92190308 - B3A SINE B2 -23 175 3 2 811 1140 253 104 9 chr11 29653986 29654321 -92189535 + MTEb LTR MaLR 5 371 -8 2 811 623 288 22 38 chr11 29654383 29654567 -92189289 + B4 SINE B4 26 206 -86 2 811 222 274 93 47 chr11 29655630 29655737 -92188119 + MIR SINE MIR 103 214 -48 2 811 1262 48 14 0 chr11 29656211 29656357 -92187499 + B1_Mur4 SINE Alu 2 149 -1 3 811 22 70 0 0 chr11 29656755 29656798 -92187058 + AT_rich Low_complexity Low_complexity 1 43 0 3 811 233 293 111 74 chr11 29657258 29657501 -92186355 + L3 LINE CR1 4227 4478 -11 3 811 1287 54 0 0 chr11 29657552 29657699 -92186157 - B1_Mm SINE Alu 0 147 1 3 811 1195 173 14 0 chr11 29658273 29658481 -92185375 - URR1B DNA MER1_type 0 225 15 3 811 1719 26 5 5 chr11 29660731 29660923 -92182933 + B2_Mm1a SINE B2 2 193 0 3 811 180 0 0 0 chr11 29661006 29661026 -92182830 + (A)n Simple_repeat Simple_repeat 1 20 0 3 811 242 273 28 70 chr11 29661333 29661404 -92182452 + B1_Mus1 SINE Alu 1 68 -80 3 811 197 220 60 0 chr11 29662274 29662324 -92181532 - L2b LINE L2 -5 3370 3318 3 811 24 0 0 0 chr11 29663009 29663033 -92180823 + AT_rich Low_complexity Low_complexity 1 24 0 3 811 602 87 10 0 chr11 29667458 29667561 -92176295 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 811 1119 133 21 0 chr11 29667695 29667883 -92175973 - URR1A DNA MER1_type 0 226 35 3 811 198 0 0 0 chr11 29668397 29668419 -92175437 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 811 23 0 0 0 chr11 29668898 29668921 -92174935 + AT_rich Low_complexity Low_complexity 1 23 0 3 811 605 153 18 0 chr11 29669234 29669345 -92174511 - Lx2 LINE L1 0 6997 6885 3 811 471 251 84 48 chr11 29669786 29669953 -92173903 + B3A SINE B2 3 175 -23 3 811 222 37 0 0 chr11 29669971 29669998 -92173858 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 3 811 1066 279 64 33 chr11 29671470 29671863 -92171993 + MT2A LTR ERVL 125 529 -4 3 811 225 83 83 0 chr11 29671867 29671903 -92171953 + MTEa LTR MaLR 333 371 -8 3 811 25 51 0 0 chr11 29671937 29671976 -92171880 + AT_rich Low_complexity Low_complexity 1 39 0 3 811 443 311 114 7 chr11 29672103 29672252 -92171604 + RSINE1 SINE B4 1 165 0 3 811 952 180 45 91 chr11 29672889 29673109 -92170747 - B3 SINE B2 -2 214 5 3 811 4051 135 29 24 chr11 29673157 29673824 -92170032 + Lx4A LINE L1 6389 7058 0 3 811 217 186 23 0 chr11 29673846 29673889 -92169967 + B4 SINE B4 41 84 -208 3 811 242 283 33 58 chr11 29673945 29674065 -92169791 + LTR33 LTR ERVL 43 159 -356 3 811 208 0 62 0 chr11 29675181 29675213 -92168643 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 811 21 0 0 0 chr11 29676566 29676587 -92167269 + GC_rich Low_complexity Low_complexity 1 21 0 3 811 229 237 70 70 chr11 29678495 29678554 -92165302 + B2_Mm2 SINE B2 96 160 -38 3 811 407 92 15 0 chr11 29678554 29678619 -92165237 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 811 229 237 70 70 chr11 29678619 29678659 -92165197 + B2_Mm2 SINE B2 158 194 -1 3 811 451 269 10 0 chr11 29678752 29678856 -92165000 - PB1D10 SINE Alu -9 108 4 3 811 198 0 0 0 chr11 29679110 29679132 -92164724 + (A)n Simple_repeat Simple_repeat 1 22 0 3 811 348 291 0 0 chr11 29679137 29679223 -92164633 + B1F2 SINE Alu 4 89 -60 3 811 339 304 27 61 chr11 29679240 29679387 -92164469 + B3 SINE B2 7 148 -68 3 811 461 219 108 36 chr11 29679496 29679761 -92164095 + L1M2 LINE L1 5324 5603 -688 3 811 417 281 66 56 chr11 29679850 29680046 -92163810 - L1M3 LINE L1 -852 5288 5091 3 811 534 278 153 25 chr11 29680251 29680454 -92163402 + B4A SINE B4 2 230 -62 3 811 640 240 111 6 chr11 29680454 29680634 -92163222 + B3 SINE B2 2 200 -16 3 811 963 70 0 0 chr11 29680719 29680847 -92163009 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 811 228 236 55 0 chr11 29681149 29681204 -92162652 + L3 LINE CR1 2831 2888 -1601 3 811 468 291 17 0 chr11 29681577 29681694 -92162162 - ID_B1 SINE B4 -4 220 102 3 811 1156 61 0 24 chr11 29682228 29682396 -92161460 + (GAAA)n Simple_repeat Simple_repeat 4 167 0 3 811 242 118 0 0 chr11 29682858 29682892 -92160964 + RMER1C Other Other 259 292 -1050 3 811 269 363 0 32 chr11 29682865 29682959 -92160897 + RMER1B Other Other 38 128 -938 3 811 234 379 0 8 chr11 29683015 29683132 -92160724 + RMER1C Other Other 25 140 -1202 3 811 2725 246 151 4 chr11 29683162 29683872 -92159984 + RMER1C Other Other 369 1182 -160 3 811 304 158 0 2 chr11 29684397 29684456 -92159400 - PB1D7 SINE Alu 0 120 60 3 811 237 284 0 69 chr11 29684667 29684739 -92159117 - MER20 DNA MER1_type -69 150 84 3 811 345 367 8 0 chr11 29684847 29684975 -92158881 - RSINE1 SINE B4 -2 163 35 3 811 759 191 206 11 chr11 29685449 29685629 -92158227 - B3 SINE B2 0 216 2 3 811 634 183 116 26 chr11 29686055 29686234 -92157622 - B3 SINE B2 -7 188 1 3 811 209 122 0 47 chr11 29687800 29687843 -92156013 + C-rich Low_complexity Low_complexity 2 42 0 3 811 708 217 3 0 chr11 29688054 29688373 -92155483 + (CA)n Simple_repeat Simple_repeat 1 319 0 3 811 289 141 0 27 chr11 29688518 29688591 -92155265 + (CAAA)n Simple_repeat Simple_repeat 1 71 0 3 811 1110 301 82 27 chr11 29689659 29690161 -92153695 + L1MB3 LINE L1 5560 6142 -41 3 811 30 59 0 0 chr11 29690769 29690820 -92153036 + AT_rich Low_complexity Low_complexity 1 51 0 3 811 439 295 18 9 chr11 29692570 29692683 -92151173 + RSINE1 SINE B4 2 115 -50 3 811 706 197 71 66 chr11 29692800 29692996 -92150860 + B3A SINE B2 2 198 0 3 811 23 0 0 0 chr11 29693216 29693239 -92150617 + AT_rich Low_complexity Low_complexity 1 23 0 3 811 183 298 114 45 chr11 29693912 29694000 -92149856 + MIR SINE MIR 64 157 -105 3 811 184 219 24 0 chr11 29694716 29694757 -92149099 + L2b LINE L2 3325 3366 -9 3 811 870 250 194 38 chr11 29695699 29695936 -92147920 - B4A SINE B4 -14 278 5 3 811 357 242 0 0 chr11 29696127 29696203 -92147653 - ID4_ SINE ID -65 87 12 3 811 1389 296 16 40 chr11 29696309 29696759 -92147097 + RodERV21-int LTR ERV1 703 1141 -3850 3 811 2199 256 44 41 chr11 29696761 29697070 -92146786 + RodERV21-int LTR ERV1 2158 2480 -2511 3 811 2531 113 5 57 chr11 29697070 29697474 -92146382 + RLTR9A2 LTR ERVK 1 383 0 3 811 2199 256 44 41 chr11 29697474 29697772 -92146084 + RodERV21-int LTR ERV1 2481 2767 -2224 3 811 544 309 35 38 chr11 29697841 29698241 -92145615 + RodERV21-int LTR ERV1 3586 3984 -3107 3 811 319 315 53 44 chr11 29699079 29699285 -92144571 + RodERV21-int LTR ERV1 3989 4196 -3405 3 811 338 233 38 8 chr11 29699677 29699809 -92144047 + MuLV-int LTR ERV1 4761 4949 -2657 3 811 471 311 52 82 chr11 29700130 29700533 -92143323 + RodERV21-int LTR ERV1 2718 3108 -1883 3 811 1150 289 122 45 chr11 29700588 29701284 -92142572 - L1_Rod LINE L1 -145 5702 4953 3 811 446 177 0 0 chr11 29701312 29701391 -92142465 + MTD LTR MaLR 336 414 -5 3 811 396 314 81 38 chr11 29701590 29701809 -92142047 + MLT1E1A-int LTR MaLR 1170 1489 0 3 811 581 316 143 30 chr11 29701845 29702311 -92141545 + MLT1E1A LTR MaLR 58 668 -12 3 811 333 246 237 0 chr11 29702635 29702749 -92141107 - RMER10A LTR ERVL 0 398 258 3 811 873 164 7 0 chr11 29702747 29702899 -92140957 - RMER10A LTR ERVL -289 153 1 3 811 480 35 0 0 chr11 29703184 29703242 -92140614 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 3 811 396 0 0 0 chr11 29703242 29703285 -92140571 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 811 574 293 65 55 chr11 29703402 29703601 -92140255 - B3 SINE B2 -10 206 6 3 811 476 273 29 7 chr11 29703759 29703899 -92139957 + MER2 DNA MER2_type 87 229 -116 3 811 2392 252 143 18 chr11 29706322 29707003 -92136853 + Lx8 LINE L1 6575 7331 -142 3 811 197 33 0 32 chr11 29707003 29707034 -92136822 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 811 2392 252 143 18 chr11 29707034 29707141 -92136715 + Lx8 LINE L1 7332 7462 -11 3 811 432 0 0 0 chr11 29708292 29708340 -92135516 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 811 230 343 37 28 chr11 29709954 29710062 -92133794 + B4 SINE B4 4 112 -180 3 811 283 203 81 178 chr11 29710604 29710778 -92133078 - MER53 DNA hAT -34 159 3 3 811 567 272 13 26 chr11 29712219 29712370 -92131486 + RSINE1 SINE B4 11 159 -6 3 811 541 293 92 8 chr11 29714029 29714335 -92129521 + L1MA4 LINE L1 5505 5907 -393 3 811 36 77 0 0 chr11 29714565 29714643 -92129213 + AT_rich Low_complexity Low_complexity 1 78 0 3 811 253 224 17 0 chr11 29715779 29715837 -92128019 + CT-rich Low_complexity Low_complexity 2 60 0 3 811 876 234 59 10 chr11 29716140 29716343 -92127513 - B3 SINE B2 -3 213 1 3 811 359 274 101 29 chr11 29716627 29716766 -92127090 - B1F SINE Alu 0 149 1 3 811 6221 168 44 51 chr11 29716900 29718139 -92125717 + Lx5 LINE L1 5820 7050 0 3 811 187 324 28 0 chr11 29718540 29718611 -92125245 - MIR3 SINE MIR -12 196 124 3 811 305 223 330 0 chr11 29719290 29719384 -92124472 + ID_B1 SINE B4 91 215 -9 3 811 421 221 46 46 chr11 29719580 29719689 -92124167 - B1_Mur2 SINE Alu -21 128 20 3 811 429 304 81 62 chr11 29719681 29720038 -92123818 + Charlie2b DNA MER1_type 1772 2135 -647 3 811 697 250 107 73 chr11 29720048 29720258 -92123598 + B4A SINE B4 2 231 -61 3 811 946 188 102 15 chr11 29720258 29720463 -92123393 + URR1B DNA MER1_type 1 223 -2 3 811 697 250 107 73 chr11 29720463 29720524 -92123332 + B4A SINE B4 232 282 -10 3 811 383 235 12 0 chr11 29720707 29720792 -92123064 + PB1D7 SINE Alu 34 119 -1 3 811 23 0 0 0 chr11 29722031 29722054 -92121802 + AT_rich Low_complexity Low_complexity 1 23 0 3 811 988 126 143 0 chr11 29722367 29722549 -92121307 - RLTR30 LTR ERV1 0 379 172 3 811 194 0 39 0 chr11 29722556 29722582 -92121274 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 811 543 209 109 0 chr11 29725546 29725656 -92118200 - RLTR30 LTR ERV1 -193 186 65 3 811 473 147 0 13 chr11 29725656 29725732 -92118124 + RMER17C LTR ERVK 1 75 -335 3 811 663 171 16 16 chr11 29725729 29725854 -92118002 + RMER17C LTR ERVK 286 410 0 3 811 782 219 201 37 chr11 29725856 29726155 -92117701 + RMER17C-int LTR ERVK 4 351 -2887 3 811 643 253 131 118 chr11 29726292 29726673 -92117183 + RMER16 LTR ERVK 113 498 -35 3 811 291 265 44 0 chr11 29727184 29727252 -92116604 + RMER17C-int LTR ERVK 396 466 -2772 3 811 1397 195 181 53 chr11 29727618 29728072 -92115784 + RMER17C-int LTR ERVK 1485 1996 -1242 3 811 787 148 28 0 chr11 29728071 29728213 -92115643 + RMER17C-int LTR ERVK 2197 2342 -896 3 811 2403 111 185 31 chr11 29728211 29728823 -92115033 + RMER17C-int LTR ERVK 2533 3238 0 3 811 1763 146 43 42 chr11 29728826 29729257 -92114599 + RMER17C LTR ERVK 15 439 -519 3 811 505 214 74 28 chr11 29730594 29730713 -92113143 - B1_Mur1 SINE Alu -21 129 6 3 811 1057 230 5 0 chr11 29730724 29730924 -92112932 - B3 SINE B2 -14 202 2 3 811 415 227 68 60 chr11 29731398 29731515 -92112341 - B1F1 SINE Alu -31 118 1 4 811 445 174 0 20 chr11 29731525 29731625 -92112231 + CT-rich Low_complexity Low_complexity 3 100 0 4 811 25 0 0 0 chr11 29731751 29731776 -92112080 + AT_rich Low_complexity Low_complexity 1 25 0 4 811 1491 93 0 5 chr11 29731781 29731976 -92111880 - B2_Mm2 SINE B2 -1 194 1 4 811 1121 218 0 5 chr11 29732370 29732573 -92111283 - B3 SINE B2 0 216 15 4 811 1129 76 127 0 chr11 29732712 29732870 -92110986 + B2_Mm1t SINE B2 1 178 -15 4 811 931 126 6 6 chr11 29732870 29733030 -92110826 + (GAGAA)n Simple_repeat Simple_repeat 1 160 0 4 811 931 130 43 7 chr11 29733678 29733817 -92110039 + B1_Mus1 SINE Alu 4 147 -1 4 811 485 312 149 23 chr11 29733842 29734230 -92109626 + MLT1F LTR MaLR 119 548 0 4 811 717 339 90 16 chr11 29734259 29734577 -92109279 + L2a LINE L2 2914 3258 -168 4 811 7414 31 0 0 chr11 29734577 29735377 -92108479 + RLTR13B4 LTR ERVK 4 803 0 4 811 717 339 90 16 chr11 29735377 29735502 -92108354 + L2a LINE L2 3259 3390 -36 4 811 916 166 7 7 chr11 29737753 29737899 -92105957 + B1_Mus2 SINE Alu 1 146 -1 4 811 1782 21 5 0 chr11 29737903 29738095 -92105761 + B2_Mm1t SINE B2 1 193 0 4 811 201 139 0 0 chr11 29738095 29738138 -92105718 + (A)n Simple_repeat Simple_repeat 1 43 0 4 811 374 284 22 22 chr11 29739071 29739161 -92104695 - RSINE1 SINE B4 -45 120 31 4 811 623 281 78 0 chr11 29739224 29739391 -92104465 - B3A SINE B2 -18 180 1 4 811 269 311 121 11 chr11 29740196 29740287 -92103569 - PB1 SINE Alu 0 127 27 4 811 180 0 0 0 chr11 29740929 29740949 -92102907 + (A)n Simple_repeat Simple_repeat 1 20 0 4 811 1419 253 113 14 chr11 29740972 29741459 -92102397 + Lx5 LINE L1 6506 7434 -26 4 811 1551 77 10 0 chr11 29741774 29741982 -92101874 + L1VL4 LINE L1 555 764 -5538 4 811 1232 69 75 0 chr11 29741982 29742178 -92101678 + L1Md_F3 LINE L1 6378 6584 0 4 811 24374 140 49 7 chr11 29742183 29747435 -92096421 + Lx2 LINE L1 1149 6641 -356 4 811 1452 98 0 39 chr11 29747436 29747669 -92096187 + Lx2 LINE L1 6774 6997 0 4 811 279 0 0 0 chr11 29747908 29747939 -92095917 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 811 240 385 0 13 chr11 29747972 29748051 -92095805 - RSINE1 SINE B4 -86 79 2 4 811 206 273 18 35 chr11 29749403 29749517 -92094339 + A-rich Low_complexity Low_complexity 6 117 0 4 811 652 206 21 62 chr11 29749621 29749766 -92094090 + B1_Mur1 SINE Alu 1 139 -10 4 811 950 129 51 16 chr11 29749797 29749991 -92093865 - B2_Mm2 SINE B2 -1 215 1 4 811 237 289 222 6 chr11 29750164 29750331 -92093525 - Lx8 LINE L1 -5 7468 7266 4 811 393 22 0 0 chr11 29750523 29750569 -92093287 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 811 277 282 154 0 chr11 29750616 29750726 -92093130 - MER46C DNA MER2_type -202 136 10 4 811 371 182 0 74 chr11 29750964 29750976 -92092880 + ID_B1 SINE B4 137 224 0 4 811 657 36 0 0 chr11 29750976 29751059 -92092797 + B1_Mus2 SINE Alu 65 147 0 4 811 218 119 0 45 chr11 29751059 29751103 -92092753 + A-rich Low_complexity Low_complexity 3 44 0 4 811 2526 158 37 7 chr11 29751444 29751853 -92092003 - MTC LTR MaLR 0 421 1 4 811 231 146 0 0 chr11 29752318 29752359 -92091497 + (TGG)n Simple_repeat Simple_repeat 1 41 0 4 811 337 376 20 0 chr11 29752368 29752469 -92091387 - RSINE1 SINE B4 -62 103 1 4 811 221 57 29 0 chr11 29753055 29753090 -92090766 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 4 812 14599 136 62 10 chr11 29754750 29757604 -92086252 + Lx2B LINE L1 750 3756 -2130 4 812 3470 46 13 0 chr11 29757604 29757995 -92085861 - MTA_Mm LTR MaLR 0 396 1 4 812 14599 131 69 5 chr11 29757995 29758072 -92085784 + Lx2B LINE L1 3757 3830 -2056 4 812 486 0 0 0 chr11 29758072 29758126 -92085730 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 812 14599 131 69 5 chr11 29758126 29758190 -92085666 + Lx2B LINE L1 3831 3900 -1986 4 812 6419 128 54 7 chr11 29758188 29759458 -92084398 + Lx2B LINE L1 5436 6746 -254 4 812 24 0 0 0 chr11 29759514 29759538 -92084318 + AT_rich Low_complexity Low_complexity 1 24 0 4 812 259 65 43 0 chr11 29759839 29759885 -92083971 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 812 464 341 0 17 chr11 29759980 29760153 -92083703 + L1MC1 LINE L1 6005 6174 -159 4 812 255 93 0 0 chr11 29760278 29760321 -92083535 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 812 519 123 0 0 chr11 29760594 29760675 -92083181 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 4 812 1097 251 44 54 chr11 29760858 29761153 -92082703 + B4A SINE B4 1 292 0 4 812 207 0 0 0 chr11 29761153 29761176 -92082680 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 812 369 93 0 0 chr11 29761255 29761309 -92082547 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 812 183 315 130 0 chr11 29762438 29762530 -92081326 + MIRc SINE MIR 82 185 -83 4 812 241 309 54 18 chr11 29762962 29763074 -92080782 - MER5B DNA MER1_type -6 172 57 4 812 446 159 0 11 chr11 29763154 29763243 -92080613 + T-rich Low_complexity Low_complexity 2 89 0 4 812 1320 34 0 0 chr11 29763244 29763391 -92080465 - B1_Mm SINE Alu 0 147 1 4 812 877 229 77 26 chr11 29763630 29763863 -92079993 + B4A SINE B4 2 246 -46 4 812 2305 240 151 85 chr11 29763869 29764719 -92079137 + Lx7 LINE L1 6445 7350 -346 4 812 866 60 154 0 chr11 29764814 29764931 -92078925 - B1_Mus1 SINE Alu -13 135 1 4 812 372 133 0 0 chr11 29764994 29765054 -92078802 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 812 2072 168 68 0 chr11 29765240 29765609 -92078247 + ORR1B1 LTR MaLR 1 394 0 4 812 7962 158 52 26 chr11 29765615 29766688 -92077168 + ORR1B1-int LTR MaLR 5 1129 -380 4 812 333 0 0 0 chr11 29766688 29766725 -92077131 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 812 720 35 0 0 chr11 29766725 29766811 -92077045 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 812 7962 158 52 26 chr11 29766811 29767203 -92076653 + ORR1B1-int LTR MaLR 1130 1508 -1 4 812 1622 175 28 103 chr11 29767203 29767591 -92076265 + ORR1B1 LTR MaLR 1 359 -8 4 812 321 147 51 53 chr11 29767598 29767674 -92076182 + ORR1C1 LTR MaLR 105 190 -177 4 812 877 173 125 5 chr11 29767709 29767901 -92075955 + ORR1C1 LTR MaLR 164 378 0 4 812 246 32 0 0 chr11 29769281 29769312 -92074544 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 812 2024 117 32 150 chr11 29769457 29769830 -92074026 - ORR1A4 LTR MaLR 0 329 1 4 812 1078 257 183 10 chr11 29769842 29770574 -92073282 + L1M2 LINE L1 4877 5736 -561 4 812 501 346 39 0 chr11 29770731 29770910 -92072946 - MER20 DNA MER1_type -27 192 7 4 812 1230 245 160 0 chr11 29771031 29771349 -92072507 + ORR1D2 LTR MaLR 2 370 0 4 812 282 262 83 0 chr11 29772052 29772136 -92071720 - L2 LINE L2 -519 2900 2810 4 812 1473 152 4 8 chr11 29772871 29773116 -92070740 + RLTR45-int LTR ERVK 2956 3199 -4045 4 812 6585 193 55 53 chr11 29773200 29774832 -92069024 + ETnERV2-int LTR ERVK 1418 3683 -3723 4 812 2231 143 110 30 chr11 29774832 29775275 -92068581 + RMER16 LTR ERVK 1 533 0 4 812 1555 150 8 4 chr11 29775275 29775523 -92068333 + RMER16-int LTR ERVK 2613 2861 -2545 4 812 619 113 23 0 chr11 29775534 29775667 -92068189 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 4 812 4960 53 0 12 chr11 29775667 29776238 -92067618 + LTRIS2 LTR ERV1 1 564 0 4 812 570 15 0 0 chr11 29776238 29776305 -92067551 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 812 5097 156 39 37 chr11 29776306 29777471 -92066385 + RMER16-int LTR ERVK 2873 3866 -1540 4 812 354 169 47 24 chr11 29777636 29777721 -92066135 + RMER16-int LTR ERVK 6336 6422 -984 4 812 2072 128 25 25 chr11 29778005 29778373 -92065483 + RLTR9A LTR ERVK 1 368 0 4 812 649 309 0 93 chr11 29778395 29778577 -92065279 - RSINE1 SINE B4 0 165 1 4 812 277 50 0 0 chr11 29778606 29778646 -92065210 + MuRRS4-int LTR ERV1 5024 5063 0 4 812 2688 63 16 21 chr11 29778656 29779042 -92064814 + LTRIS4 LTR ERV1 124 507 0 4 812 196 382 15 0 chr11 29779931 29779999 -92063857 + L4 LINE RTE 1367 1435 -594 4 812 241 286 15 45 chr11 29780089 29780155 -92063701 + MER81 DNA AcHobo 19 82 -32 4 812 631 288 65 5 chr11 29780367 29780552 -92063304 - B3 SINE B2 -19 197 2 4 812 360 200 29 0 chr11 29781557 29781627 -92062229 + ID4_ SINE ID 2 73 -10 4 812 269 143 0 35 chr11 29781750 29781808 -92062048 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 4 812 606 233 0 0 chr11 29782493 29782609 -92061247 + B1F2 SINE Alu 15 130 -19 4 812 270 0 0 0 chr11 29782645 29782675 -92061181 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 812 23 78 0 0 chr11 29783865 29783916 -92059940 + AT_rich Low_complexity Low_complexity 1 51 0 4 812 251 359 75 16 chr11 29784455 29784761 -92059095 - L1M5 LINE L1 -260 5864 5541 4 812 32 0 0 0 chr11 29785781 29785813 -92058043 + AT_rich Low_complexity Low_complexity 1 32 0 4 812 970 116 14 0 chr11 29786063 29786209 -92057647 + B1_Mur3 SINE Alu 2 149 0 4 812 723 174 41 0 chr11 29786225 29786346 -92057510 + B3 SINE B2 1 126 -90 4 812 393 243 6 145 chr11 29786463 29786622 -92057234 + L1VL1 LINE L1 221 357 -6065 4 812 399 254 16 8 chr11 29786699 29786826 -92057030 + L1_Mus2 LINE L1 675 802 -5814 4 812 30314 107 4 32 chr11 29786835 29790047 -92053809 + L1_Mus2 LINE L1 725 3846 -2037 4 812 2993 35 0 0 chr11 29790047 29790393 -92053463 + ORR1A1 LTR MaLR 1 346 0 4 812 30314 86 3 18 chr11 29790393 29793156 -92050700 + L1_Mus2 LINE L1 3847 6566 0 4 812 279 217 87 0 chr11 29793999 29794068 -92049788 + RMER1C Other Other 1260 1334 -8 4 812 302 304 78 36 chr11 29794077 29794244 -92049612 + HAL1-3A_ME LINE L1 2265 2438 -420 4 812 214 225 13 53 chr11 29794456 29794531 -92049325 + MIRc SINE MIR 182 253 -15 4 812 273 287 0 0 chr11 29794928 29795036 -92048820 + (CATA)n Simple_repeat Simple_repeat 4 111 0 4 812 481 270 134 5 chr11 29795216 29795402 -92048454 - MER57C2 LTR ERV1 0 434 225 4 812 302 271 105 88 chr11 29796056 29796311 -92047545 + MTEa LTR MaLR 100 367 -12 4 812 195 345 43 22 chr11 29796317 29796409 -92047447 + MER5B DNA MER1_type 82 175 -3 4 812 371 233 0 10 chr11 29797244 29797348 -92046508 + GA-rich Low_complexity Low_complexity 1 103 0 4 812 664 238 16 0 chr11 29797782 29797908 -92045948 - B1F1 SINE Alu -19 130 3 5 812 14450 56 7 1 chr11 29798335 29800969 -92042887 - L1Md_F2 LINE L1 0 6582 3934 5 812 1284 318 45 2 chr11 29801166 29801630 -92042226 - Lx8 LINE L1 -192 7281 6798 5 812 189 390 39 29 chr11 29801632 29801735 -92042121 + MIRb SINE MIR 95 198 -70 5 812 1438 236 83 3 chr11 29801813 29802161 -92041695 - MTE2b LTR MaLR -2 377 2 5 812 4086 286 79 43 chr11 29802162 29803599 -92040257 - MTE2b-int LTR MaLR 0 1580 93 5 812 23 54 0 0 chr11 29803599 29803636 -92040220 + AT_rich Low_complexity Low_complexity 1 37 0 5 812 3014 18 9 0 chr11 29803933 29804276 -92039580 - ORR1A0 LTR MaLR 0 346 1 5 812 765 255 28 117 chr11 29805336 29805549 -92038307 + B3 SINE B2 1 197 -19 5 812 2587 67 0 10 chr11 29807550 29807962 -92035894 - L1_Mus4 LINE L1 -710 5926 5519 5 812 1063 259 85 90 chr11 29808131 29808720 -92035136 + Lx9 LINE L1 7052 7637 -7 5 812 4055 69 15 12 chr11 29810293 29810616 -92033240 + MusHAL1 LINE L1 194 525 -2829 5 812 7748 32 21 3 chr11 29810616 29811529 -92032327 + RLTR13B3 LTR ERVK 1 929 0 5 812 4055 69 15 12 chr11 29811529 29811794 -92032062 + MusHAL1 LINE L1 526 784 -2570 5 812 4089 123 131 61 chr11 29811803 29812650 -92031206 - RMER17A2 LTR ERVK 0 906 1 5 812 2135 64 16 0 chr11 29812650 29812961 -92030895 + MusHAL1 LINE L1 787 1102 -2251 5 812 3029 223 63 96 chr11 29812961 29813952 -92029904 - RMER17B LTR ERVK 0 958 1 5 812 2351 63 6 0 chr11 29813952 29814285 -92029571 + MusHAL1 LINE L1 456 790 -1922 5 812 474 217 72 60 chr11 29814552 29814589 -92029267 + MER63D DNA AcHobo 1 33 -1028 5 812 1117 182 22 9 chr11 29814589 29814811 -92029045 + URR1B DNA MER1_type 1 225 0 5 812 574 292 137 52 chr11 29814811 29815561 -92028295 + MER63D DNA AcHobo 34 960 -101 5 812 233 75 36 36 chr11 29815561 29815616 -92028240 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 812 445 308 116 60 chr11 29815616 29815697 -92028159 + MER63D DNA AcHobo 961 1043 -18 5 812 296 161 71 0 chr11 29816164 29816220 -92027636 + MIR SINE MIR 111 170 -92 5 812 252 0 0 0 chr11 29816464 29816492 -92027364 + (A)n Simple_repeat Simple_repeat 1 28 0 5 812 672 298 0 0 chr11 29816901 29817062 -92026794 + RSINE1 SINE B4 1 161 -4 5 812 272 262 153 9 chr11 29817333 29817549 -92026307 + L1ME1 LINE L1 5095 5341 -805 5 812 608 277 95 20 chr11 29817595 29817933 -92025923 + L1ME1 LINE L1 5516 5879 -361 5 812 27994 105 13 19 chr11 29818362 29823941 -92019915 + L1_Mus1 LINE L1 1033 6565 -2 5 812 1059 68 0 58 chr11 29824996 29825151 -92018705 + B1_Mus2 SINE Alu 2 147 0 5 812 3367 23 5 2 chr11 29825299 29825694 -92018162 - MTA_Mm LTR MaLR 0 396 1 5 812 648 285 15 0 chr11 29827656 29827793 -92016063 - ID_B1 SINE B4 -6 218 80 5 812 269 268 42 0 chr11 29827806 29827877 -92015979 - L2c LINE L2 -2 3385 3312 5 812 2077 127 81 9 chr11 29828044 29828379 -92015477 - ORR1B2 LTR MaLR -8 359 1 5 812 26 50 0 0 chr11 29828686 29828726 -92015130 + AT_rich Low_complexity Low_complexity 1 40 0 5 812 1936 131 18 67 chr11 29829956 29830299 -92013557 - ORR1A3 LTR MaLR 0 326 1 5 812 390 21 0 0 chr11 29830474 29830521 -92013335 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 812 295 256 43 18 chr11 29831642 29831805 -92012051 + (TGAG)n Simple_repeat Simple_repeat 4 170 0 5 812 506 208 100 11 chr11 29832170 29832299 -92011557 - B1_Mus1 SINE Alu -10 139 1 5 812 640 208 100 0 chr11 29832856 29832986 -92010870 - B1_Mur1 SINE Alu -6 143 1 5 812 301 320 173 71 chr11 29833338 29833846 -92010010 + MER77 LTR ERVL 45 604 -3 5 812 653 298 7 0 chr11 29834168 29834319 -92009537 + RSINE1 SINE B4 2 153 -12 5 812 321 82 0 0 chr11 29834322 29834371 -92009485 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 812 627 278 102 13 chr11 29834546 29834772 -92009084 + MER44B DNA MER2_type 2 247 -303 5 812 442 259 42 21 chr11 29834951 29835093 -92008763 + B1F1 SINE Alu 3 147 -2 5 812 420 209 0 0 chr11 29835315 29835405 -92008451 + T-rich Low_complexity Low_complexity 40 129 0 5 812 1177 75 0 0 chr11 29835405 29835551 -92008305 - B1_Mus2 SINE Alu -1 146 1 5 812 420 209 0 0 chr11 29835551 29835589 -92008267 + T-rich Low_complexity Low_complexity 2 39 0 5 812 493 310 107 0 chr11 29836932 29837129 -92006727 + MER2 DNA MER2_type 9 226 -119 5 812 249 226 0 31 chr11 29838414 29838478 -92005378 + L1VL2 LINE L1 347 408 -5927 5 812 16417 150 37 12 chr11 29838463 29841726 -92002130 + L1VL4 LINE L1 854 4187 -1699 5 812 213 39 0 0 chr11 29841726 29841752 -92002104 + (ATATG)n Simple_repeat Simple_repeat 3 28 0 5 812 16417 149 39 11 chr11 29841752 29842181 -92001675 + L1VL4 LINE L1 4188 4637 -1249 5 812 4521 89 24 65 chr11 29842183 29842920 -92000936 + Lx2A LINE L1 6301 7007 -1 5 812 637 133 8 24 chr11 29842922 29843045 -92000811 + Lx2 LINE L1 6877 6997 0 5 812 320 0 25 0 chr11 29843066 29843106 -92000750 + (TAA)n Simple_repeat Simple_repeat 2 42 0 5 812 188 152 43 0 chr11 29843176 29843222 -92000634 + (TATG)n Simple_repeat Simple_repeat 4 51 0 5 812 2174 163 41 36 chr11 29843327 29843746 -92000110 - MTC LTR MaLR 0 421 1 5 812 821 174 0 63 chr11 29843889 29844048 -91999808 - B1_Mur1 SINE Alu 0 149 1 5 812 591 271 19 25 chr11 29844093 29844252 -91999604 + B3A SINE B2 39 196 -2 5 812 295 225 208 0 chr11 29844571 29844691 -91999165 - L1ME1 LINE L1 -29 6150 6006 5 812 26 0 0 0 chr11 29845116 29845142 -91998714 + AT_rich Low_complexity Low_complexity 1 26 0 5 812 6019 69 17 2 chr11 29845487 29846298 -91997558 + RLTR22_Mus LTR ERVK 1 823 -985 5 812 1471 132 63 8 chr11 29846555 29846807 -91997049 + RLTR22_Mus LTR ERVK 1543 1808 0 5 812 1867 239 108 41 chr11 29847414 29848052 -91995804 - Lx6 LINE L1 -2 7458 6778 5 812 223 28 27 27 chr11 29848141 29848178 -91995678 + (CAAAAA)n Simple_repeat Simple_repeat 4 40 0 5 812 664 255 90 0 chr11 29848642 29848830 -91995026 - MER54A LTR ERVL -32 869 665 5 812 977 308 119 26 chr11 29848836 29849333 -91994523 - MER73 LTR ERVL -96 548 6 5 812 1239 41 0 0 chr11 29850001 29850147 -91993709 - B1_Mm SINE Alu 0 147 2 5 812 767 159 25 0 chr11 29850254 29850401 -91993455 + ORR1A3 LTR MaLR 1 152 -175 5 812 698 103 0 0 chr11 29850543 29850640 -91993216 - MERVL_2A-int LTR ERVL -4698 1063 967 5 812 775 162 35 6 chr11 29850640 29850800 -91993056 - ORR1A3 LTR MaLR -169 177 1 5 812 1362 31 0 0 chr11 29850921 29851084 -91992772 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 5 812 795 140 0 22 chr11 29851236 29851419 -91992437 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 812 248 255 7 0 chr11 29851455 29851600 -91992256 + (TG)n Simple_repeat Simple_repeat 2 147 0 5 812 436 279 113 14 chr11 29852202 29852344 -91991512 + RSINE1 SINE B4 8 163 -2 5 812 198 103 0 0 chr11 29852353 29852382 -91991474 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 812 233 342 43 43 chr11 29853629 29853791 -91990065 - MIRb SINE MIR 0 268 107 5 812 24 0 0 0 chr11 29854122 29854146 -91989710 + AT_rich Low_complexity Low_complexity 1 24 0 5 812 258 286 0 35 chr11 29854364 29854451 -91989405 + MLT1A1 LTR MaLR 320 403 -5 5 812 1698 109 14 2 chr11 29854598 29854889 -91988967 + BGLII LTR ERVK 142 443 -2 5 812 965 181 0 8 chr11 29854904 29855160 -91988696 + CT-rich Low_complexity Low_complexity 1 254 0 5 812 355 271 78 66 chr11 29855160 29855480 -91988376 + Lx7 LINE L1 7357 7680 -16 5 812 362 312 120 6 chr11 29855690 29855848 -91988008 + B4A SINE B4 97 272 -20 5 812 7947 112 8 16 chr11 29855858 29857168 -91986688 - L1_Mm LINE L1 -991 4892 3594 5 812 4677 91 28 11 chr11 29857165 29857873 -91985983 + L1_Mus3 LINE L1 5881 6600 -38 5 812 3814 194 137 59 chr11 29857873 29859362 -91984494 - RMER3D-int LTR ERVK -844 1998 64 5 812 2028 174 60 26 chr11 29859425 29859873 -91983983 - RLTR17 LTR ERVK -49 643 178 5 812 234 0 0 0 chr11 29860030 29860056 -91983800 + (T)n Simple_repeat Simple_repeat 1 26 0 5 812 414 281 64 36 chr11 29860092 29860232 -91983624 - MLT1A1 LTR MaLR -264 144 1 5 812 242 281 96 25 chr11 29860235 29860392 -91983464 + L1MA10 LINE L1 6154 6321 -13 5 812 213 175 0 0 chr11 29860412 29860452 -91983404 + B3A SINE B2 2 41 -157 5 812 385 198 330 0 chr11 29860420 29860511 -91983345 + RSINE1 SINE B4 11 131 -34 5 812 450 0 0 0 chr11 29860519 29860569 -91983287 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 812 21 36 0 0 chr11 29860658 29860686 -91983170 + AT_rich Low_complexity Low_complexity 1 28 0 5 812 35121 30 3 8 chr11 29861111 29866496 -91977360 + L1Md_T LINE L1 232 5585 -298 5 812 8548 30 0 0 chr11 29866497 29867493 -91976363 + L1Md_T LINE L1 5587 6582 0 5 812 216 0 0 0 chr11 29867500 29867524 -91976332 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 812 714 216 189 22 chr11 29867539 29867724 -91976132 - B3 SINE B2 0 216 1 5 812 477 0 0 0 chr11 29867874 29867927 -91975929 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 812 258 308 77 0 chr11 29867958 29868049 -91975807 - MIR3 SINE MIR -50 158 61 5 812 1047 267 136 13 chr11 29869457 29870082 -91973774 + L1MC4 LINE L1 7211 7912 -130 5 812 216 226 0 77 chr11 29870187 29870278 -91973578 + GA-rich Low_complexity Low_complexity 1 84 0 5 812 280 208 148 50 chr11 29870292 29870393 -91973463 + L1MC4 LINE L1 7931 8041 -1 5 812 342 0 0 0 chr11 29870412 29870450 -91973406 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 812 523 248 14 41 chr11 29870473 29870620 -91973236 + ID_B1 SINE B4 79 221 -3 5 812 1248 106 0 46 chr11 29871338 29871535 -91972321 + B2_Mm2 SINE B2 2 189 -6 5 812 242 291 92 6 chr11 29872629 29872708 -91971148 + B1F1 SINE Alu 33 114 -3 5 812 596 275 61 0 chr11 29872814 29872945 -91970911 + RSINE1 SINE B4 5 143 -22 5 812 1167 73 0 29 chr11 29872952 29873191 -91970665 + (GAAA)n Simple_repeat Simple_repeat 1 231 0 5 812 221 231 0 71 chr11 29873296 29873352 -91970504 - PB1D10 SINE Alu -1 116 65 5 812 320 288 4 0 chr11 29873394 29873626 -91970230 + (TG)n Simple_repeat Simple_repeat 1 232 0 5 812 810 287 73 22 chr11 29873644 29873918 -91969938 - B4 SINE B4 -3 289 2 6 812 364 271 0 35 chr11 29873933 29874037 -91969819 + PB1D7 SINE Alu 24 120 0 6 812 438 94 0 0 chr11 29874185 29874249 -91969607 + (CATA)n Simple_repeat Simple_repeat 1 64 0 6 812 323 328 86 8 chr11 29874250 29874367 -91969489 - MER2 DNA MER2_type -8 337 212 6 812 676 256 6 63 chr11 29874431 29874606 -91969250 - B4A SINE B4 -19 273 109 6 812 378 309 100 7 chr11 29874634 29874774 -91969082 - MER2 DNA MER2_type -191 154 2 6 812 457 275 34 27 chr11 29874839 29874985 -91968871 - B1F SINE Alu -2 147 1 6 812 813 270 45 5 chr11 29875001 29875202 -91968654 - B3 SINE B2 0 216 8 6 812 278 281 21 0 chr11 29875218 29875314 -91968542 + L1MC4a LINE L1 6760 6857 -1025 6 812 31459 91 30 10 chr11 29875486 29880994 -91962862 + L1Md_F2 LINE L1 217 5668 -215 6 812 3969 67 100 4 chr11 29880994 29881552 -91962304 + L1Md_F2 LINE L1 5959 6570 -12 6 812 727 291 48 21 chr11 29881626 29881998 -91961858 + L1MC4 LINE L1 7241 7622 -420 6 812 611 305 79 9 chr11 29883880 29884198 -91959658 - Lx8 LINE L1 -29 7444 7105 6 813 216 0 0 0 chr11 29885300 29885324 -91958532 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 813 538 291 25 19 chr11 29885597 29885758 -91958098 + RSINE1 SINE B4 2 163 -2 6 813 323 109 18 0 chr11 29885871 29885926 -91957930 + RLTR13D4 LTR ERVK 978 1033 0 6 813 562 288 53 53 chr11 29886316 29886525 -91957331 + RLTR20C LTR ERVK 66 274 -260 6 813 18164 72 29 14 chr11 29886615 29889875 -91953981 + L1VL4 LINE L1 188 3512 -47 6 813 7180 103 11 15 chr11 29889871 29891560 -91952296 + Lx LINE L1 4948 6629 -25 6 813 1198 136 11 0 chr11 29891560 29891736 -91952120 + B2_Mm1t SINE B2 2 179 -14 6 813 322 148 0 36 chr11 29891808 29891864 -91951992 + B2_Mm2 SINE B2 48 101 -94 6 813 23 54 0 0 chr11 29891887 29891924 -91951932 + AT_rich Low_complexity Low_complexity 1 37 0 6 813 8339 56 5 2 chr11 29892352 29894108 -91949748 - L1Md_F2 LINE L1 0 6582 4861 6 813 215 213 43 0 chr11 29894207 29894254 -91949602 + MIRb SINE MIR 34 82 -186 6 813 207 0 0 0 chr11 29895280 29895303 -91948553 + (T)n Simple_repeat Simple_repeat 1 23 0 6 813 1282 34 0 14 chr11 29895587 29895735 -91948121 + B1_Mm SINE Alu 1 146 -1 6 813 28 0 0 0 chr11 29896546 29896574 -91947282 + AT_rich Low_complexity Low_complexity 1 28 0 6 813 26505 113 55 30 chr11 29896576 29900702 -91943154 - Lx3C LINE L1 -7 6969 2684 6 813 3358 46 10 8 chr11 29900702 29901097 -91942759 - MTA_Mm LTR MaLR 0 396 1 6 813 26505 121 63 31 chr11 29901097 29903031 -91940825 - Lx3C LINE L1 -3203 2683 216 6 813 183 42 0 0 chr11 29903122 29903146 -91940710 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 813 477 226 56 43 chr11 29904006 29904168 -91939688 + RLTR43A LTR ERVK 201 364 0 6 813 3855 179 63 8 chr11 29904396 29904539 -91939317 - RMER1A Other Other -4 1026 880 6 813 468 77 0 0 chr11 29904539 29904604 -91939252 + (CCA)n Simple_repeat Simple_repeat 1 65 0 6 813 3855 179 63 8 chr11 29904604 29905177 -91938679 - RMER1A Other Other -151 879 272 6 813 1379 267 53 42 chr11 29905144 29906205 -91937651 - RMER1A Other Other -558 508 2 6 813 414 0 0 0 chr11 29906277 29906323 -91937533 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 813 708 245 106 0 chr11 29906632 29906820 -91937036 + B3 SINE B2 5 212 -4 6 813 423 299 50 32 chr11 29907604 29907822 -91936034 - L1MC4 LINE L1 -378 7664 7443 6 813 729 34 0 0 chr11 29908233 29908321 -91935535 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 813 1293 177 23 0 chr11 29908673 29908893 -91934963 - URR1B DNA MER1_type 0 225 1 6 813 358 295 132 79 chr11 29909238 29909265 -91934591 - MLT2B5 LTR ERVL -333 268 187 6 813 525 299 27 48 chr11 29909265 29909451 -91934405 - MTEb LTR MaLR -152 227 46 6 813 358 295 132 79 chr11 29909451 29909507 -91934349 - MLT2B5 LTR ERVL -333 186 6 6 813 540 45 0 0 chr11 29909689 29909756 -91934100 + (TCC)n Simple_repeat Simple_repeat 3 69 0 6 813 401 264 46 0 chr11 29909759 29909846 -91934010 - PB1D10 SINE Alu -13 104 14 6 813 203 298 146 48 chr11 29910022 29910319 -91933537 - L2b LINE L2 -12 3375 3040 6 813 187 56 54 27 chr11 29910850 29910887 -91932969 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 6 813 561 64 0 0 chr11 29911283 29911361 -91932495 + (GA)n Simple_repeat Simple_repeat 1 78 0 6 813 686 12 0 12 chr11 29911516 29911600 -91932256 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 6 813 645 294 7 0 chr11 29911602 29911745 -91932111 + ID_B1 SINE B4 81 224 0 6 813 235 0 57 0 chr11 29911747 29911782 -91932074 + (CAA)n Simple_repeat Simple_repeat 1 37 0 6 813 186 43 0 0 chr11 29912109 29912132 -91931724 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 813 632 206 162 31 chr11 29912142 29912302 -91931554 - B3A SINE B2 -16 182 2 6 813 1185 249 116 10 chr11 29912443 29913020 -91930836 + L1M4 LINE L1 4902 5539 -635 6 813 238 229 16 16 chr11 29913074 29913136 -91930720 + PB1D9 SINE Alu 1 62 -58 6 813 217 271 67 56 chr11 29913136 29913164 -91930692 + B4 SINE B4 86 176 -116 6 813 2475 134 38 5 chr11 29914223 29914591 -91929265 + RLTR14 LTR ERV1 3 382 0 6 813 765 239 16 27 chr11 29914591 29914776 -91929080 + RLTR14-int LTR ERV1 1 183 -5134 6 813 947 58 0 0 chr11 29914905 29915025 -91928831 + B1_Mus1 SINE Alu 5 124 -24 6 813 224 0 0 61 chr11 29915025 29915058 -91928798 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 813 1472 232 62 57 chr11 29915058 29915167 -91928689 + RLTR14-int LTR ERV1 271 376 -4941 6 813 225 0 0 0 chr11 29915167 29915192 -91928664 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 813 1472 232 62 57 chr11 29915192 29915470 -91928386 + RLTR14-int LTR ERV1 377 659 -4658 6 813 805 195 42 36 chr11 29915470 29915635 -91928221 + RLTR14-int LTR ERV1 579 744 -4573 6 813 441 0 0 0 chr11 29915666 29915715 -91928141 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 6 813 938 201 84 13 chr11 29915715 29915942 -91927914 + RLTR14-int LTR ERV1 946 1188 -4129 6 813 2251 118 87 0 chr11 29915942 29916297 -91927559 - ORR1B1 LTR MaLR -8 386 1 6 813 2308 147 26 21 chr11 29916297 29916685 -91927171 + RLTR14-int LTR ERV1 1175 1564 -3753 6 813 1438 213 60 47 chr11 29916772 29917152 -91926704 + RMER13A LTR ERVK 77 461 -399 6 813 5532 110 12 23 chr11 29917293 29918104 -91925752 + RLTR13D1 LTR ERVK 1 802 -4 6 813 5445 148 99 31 chr11 29918270 29919249 -91924607 + RLTR14-int LTR ERV1 2142 3187 -2130 6 813 1428 195 12 8 chr11 29919261 29919519 -91924337 - RLTR14-int LTR ERV1 -1174 4143 3885 6 813 191 322 93 62 chr11 29920008 29920170 -91923686 + MIRb SINE MIR 34 200 -68 6 813 294 305 12 0 chr11 29920836 29920918 -91922938 - MIRb SINE MIR -52 216 134 6 813 753 200 50 7 chr11 29922945 29923086 -91920770 + B1F SINE Alu 1 147 -2 6 813 192 40 0 0 chr11 29923113 29923138 -91920718 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 813 288 0 0 0 chr11 29923329 29923361 -91920495 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 813 416 104 15 0 chr11 29923931 29923998 -91919858 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 6 813 203 125 25 0 chr11 29925566 29925606 -91918250 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 813 228 100 0 0 chr11 29927075 29927115 -91916741 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 813 405 287 122 87 chr11 29927119 29927405 -91916451 - MLT1A LTR MaLR -78 296 1 6 813 806 212 0 8 chr11 29927731 29927864 -91915992 + B1_Mur2 SINE Alu 2 133 -16 6 813 320 263 98 29 chr11 29927984 29928086 -91915770 - B1_Mur2 SINE Alu -40 109 1 6 813 1289 221 229 50 chr11 29928127 29928744 -91915112 + MTC-int LTR MaLR 2 729 -529 6 813 527 276 101 101 chr11 29928798 29928991 -91914865 - RLTR11A2 LTR ERVK -17 510 322 6 813 998 216 170 49 chr11 29928991 29929356 -91914500 - RLTR9E LTR ERVK 0 409 1 6 813 527 292 103 97 chr11 29929356 29929662 -91914194 - RLTR11A2 LTR ERVK -206 321 4 6 813 3853 195 41 59 chr11 29929699 29930418 -91913438 - MYSERV6-int LTR ERVK -17 8942 8234 6 813 968 180 16 11 chr11 29930418 29930603 -91913253 + B2_Mm2 SINE B2 1 186 -9 6 813 3853 195 41 59 chr11 29930603 29930667 -91913189 - MYSERV6-int LTR ERVK -726 8233 8170 6 813 4105 52 19 0 chr11 29930667 29931133 -91912723 - MT2C_Mm LTR ERVL 0 475 1 6 813 3853 195 41 59 chr11 29931133 29931329 -91912527 - MYSERV6-int LTR ERVK -790 8169 7980 6 813 6443 80 94 24 chr11 29931329 29932294 -91911562 - Lx3B LINE L1 -171 5715 4683 6 813 6076 120 18 24 chr11 29932289 29933220 -91910636 + Lx3B LINE L1 5708 6633 -340 6 813 21710 82 8 2 chr11 29933485 29937110 -91906746 + L1Md_F LINE L1 587 4234 -1649 6 813 14418 61 1 0 chr11 29937111 29939076 -91904780 - L1Md_F2 LINE L1 -560 6022 4055 6 813 6744 100 3 26 chr11 29939073 29940401 -91903455 - L1Md_F2 LINE L1 -4310 1573 307 6 813 11855 239 61 55 chr11 29940403 29944187 -91899669 - MYSERV6-int LTR ERVK -4794 4165 358 6 813 25 0 0 0 chr11 29944442 29944467 -91899389 + AT_rich Low_complexity Low_complexity 1 25 0 6 813 26 0 0 0 chr11 29944595 29944621 -91899235 + AT_rich Low_complexity Low_complexity 1 26 0 6 813 388 235 19 10 chr11 29944649 29944752 -91899104 + B4A SINE B4 1 104 -188 6 813 776 239 92 5 chr11 29944746 29944931 -91898925 + B3 SINE B2 15 215 -1 6 813 637 271 44 6 chr11 29945270 29945430 -91898426 + B4A SINE B4 3 168 -124 6 813 395 38 0 19 chr11 29945777 29945831 -91898025 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 813 21 36 0 0 chr11 29946032 29946060 -91897796 + AT_rich Low_complexity Low_complexity 1 28 0 6 813 360 305 93 10 chr11 29946366 29946554 -91897302 + L1ME1 LINE L1 5753 5956 -223 6 813 1056 93 0 0 chr11 29946554 29946704 -91897152 + (GAA)n Simple_repeat Simple_repeat 2 151 0 6 813 360 305 93 10 chr11 29946704 29946720 -91897136 + L1ME1 LINE L1 5957 5974 -205 6 813 229 258 97 0 chr11 29946736 29946829 -91897027 + L1ME1 LINE L1 6037 6138 -26 6 813 410 0 20 0 chr11 29946843 29946893 -91896963 + (TTTTA)n Simple_repeat Simple_repeat 5 55 0 6 813 698 173 0 16 chr11 29946930 29947059 -91896797 - B3 SINE B2 -88 128 2 6 813 637 137 0 17 chr11 29947119 29947238 -91896618 + GA-rich Low_complexity Low_complexity 1 117 0 6 813 969 223 10 0 chr11 29947406 29947599 -91896257 - B3 SINE B2 -21 195 1 6 813 561 296 153 0 chr11 29948072 29948248 -91895608 - ID_B1 SINE B4 0 224 22 6 813 259 232 86 14 chr11 29948244 29948314 -91895542 + B3A SINE B2 113 187 -11 6 813 417 211 0 0 chr11 29948759 29948830 -91895026 + ID4 SINE ID 2 72 -11 6 813 200 200 0 0 chr11 29948841 29948876 -91894980 + GA-rich Low_complexity Low_complexity 3 37 0 6 813 1987 150 39 6 chr11 29949051 29949365 -91894491 + RLTR14 LTR ERV1 1 325 -57 6 813 639 71 0 0 chr11 29949365 29949450 -91894406 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 813 1987 150 39 6 chr11 29949450 29949498 -91894358 + RLTR14 LTR ERV1 326 374 -8 6 813 361 155 32 97 chr11 29949623 29949677 -91894179 - ORR1C1 LTR MaLR -7 371 321 7 813 3153 42 31 0 chr11 29949677 29950061 -91893795 - MTA_Mm LTR MaLR 0 396 1 7 813 361 155 32 97 chr11 29950061 29950077 -91893779 - ORR1C1 LTR MaLR -58 320 307 7 813 4425 138 85 32 chr11 29950077 29950901 -91892955 + RMER19B LTR ERVK 1 868 -34 7 813 1067 36 0 0 chr11 29950881 29951018 -91892838 - LTRIS_Mus LTR ERV1 -450 137 1 7 813 12580 291 42 48 chr11 29951018 29958103 -91885753 - RLTR6-int LTR ERV1 0 7778 349 7 813 306 0 0 0 chr11 29958103 29958137 -91885719 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 813 6598 254 34 51 chr11 29958137 29958509 -91885347 - RLTR6-int LTR ERV1 -4715 348 6 7 813 4549 70 8 24 chr11 29958510 29959106 -91884750 - LTRIS_Mus LTR ERV1 0 587 1 7 813 332 188 0 0 chr11 29959204 29959273 -91884583 + RLTR12A LTR ERVK 1 69 -499 7 813 2563 72 46 0 chr11 29959331 29959704 -91884152 + MT2B2 LTR ERVL 1 390 -194 7 813 262 240 47 16 chr11 29960179 29960283 -91883573 + LTRIS2 LTR ERV1 341 502 -62 7 813 1316 68 42 0 chr11 29960306 29960496 -91883360 + MT2B2 LTR ERVL 387 584 0 7 813 491 115 0 0 chr11 29960496 29960574 -91883282 + ORR1A3-int LTR MaLR 1 78 -1885 7 813 4769 100 23 8 chr11 29960571 29961307 -91882549 - RLTR13C1 LTR ERVK -172 811 65 7 813 28107 59 2 1 chr11 29961310 29965566 -91878290 - L1Md_F2 LINE L1 0 6585 2324 7 813 41195 18 3 6 chr11 29965565 29971966 -91871890 - L1Md_A LINE L1 0 6582 206 7 813 8394 76 3 8 chr11 29971960 29974067 -91869789 - L1Md_F2 LINE L1 -3543 2343 151 7 813 473 193 14 18 chr11 29974067 29974169 -91869687 - RLTR13C1 LTR ERVK -710 96 1 7 813 1029 241 24 32 chr11 29974171 29974424 -91869432 - RLTR14-int LTR ERV1 -5066 251 1 7 813 1685 140 184 0 chr11 29974424 29974745 -91869111 - RLTR14 LTR ERV1 0 382 3 7 813 332 294 0 0 chr11 29974747 29974815 -91869041 + RSINE1 SINE B4 83 150 -15 7 813 276 30 0 0 chr11 29974820 29974853 -91869003 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 813 23 33 0 0 chr11 29974864 29974894 -91868962 + AT_rich Low_complexity Low_complexity 1 30 0 7 813 478 333 62 31 chr11 29974894 29975086 -91868770 + B4 SINE B4 94 291 -1 7 813 445 250 6 146 chr11 29975182 29975346 -91868510 - B1_Mur2 SINE Alu -8 141 1 7 813 3478 28 5 0 chr11 29975670 29976064 -91867792 - MTA_Mm LTR MaLR 0 396 1 7 813 200 59 29 0 chr11 29976134 29976168 -91867688 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 7 813 859 73 252 0 chr11 29976176 29976327 -91867529 + B2_Mm2 SINE B2 1 189 -6 7 813 1930 74 59 14 chr11 29976370 29976656 -91867200 + L1_Mus1 LINE L1 6269 6567 0 7 813 299 61 29 43 chr11 29976671 29976740 -91867116 + (CAAAA)n Simple_repeat Simple_repeat 3 70 0 7 813 17361 167 53 34 chr11 29976819 29978291 -91865565 - Lx5 LINE L1 0 7050 5512 7 813 4696 122 68 50 chr11 29978291 29979162 -91864694 - RMER17D LTR ERVK -3 886 1 7 813 17361 119 23 95 chr11 29979162 29981296 -91862560 - Lx5 LINE L1 -366 5511 3415 7 813 1452 64 16 0 chr11 29981296 29981483 -91862373 + B2_Mm2 SINE B2 1 190 -5 7 813 17361 119 23 95 chr11 29981483 29982321 -91861535 - Lx5 LINE L1 -2463 3414 2765 7 813 894 197 145 11 chr11 29983361 29983609 -91860247 - MTD LTR MaLR -134 285 2 7 813 539 217 140 18 chr11 29983734 29983808 -91860048 + RLTR28B LTR ERVL 3 98 -383 7 813 2260 93 6 58 chr11 29983808 29984152 -91859704 + ORR1A3 LTR MaLR 1 326 0 7 813 539 217 140 18 chr11 29984152 29984241 -91859615 + RLTR28B LTR ERVL 99 186 -295 7 813 638 218 129 87 chr11 29985662 29985994 -91857862 + RLTR19-int LTR ERVK 2667 3012 -3125 7 813 1364 232 164 48 chr11 29986989 29987465 -91856391 - RLTR20B1 LTR ERVK -3 560 1 7 813 21 57 0 0 chr11 29987724 29987759 -91856097 + AT_rich Low_complexity Low_complexity 1 35 0 7 813 1014 131 7 0 chr11 29987759 29987904 -91855952 + B1_Mus1 SINE Alu 3 148 0 7 813 565 240 48 92 chr11 29988122 29988351 -91855505 + RMER17C-int LTR ERVK 2607 2825 -413 7 813 282 277 35 35 chr11 29988409 29988495 -91855361 + RLTR19-int LTR ERVK 4239 4324 -1813 7 813 285 272 136 25 chr11 29988547 29988709 -91855147 + RLTR28B LTR ERVL 7 186 -295 7 813 403 316 30 51 chr11 29988997 29989194 -91854662 + B4A SINE B4 100 292 0 7 813 2250 121 81 22 chr11 29989250 29989621 -91854235 - ORR1B1 LTR MaLR 0 394 2 7 813 231 111 0 0 chr11 29989663 29989699 -91854157 + L1MB7 LINE L1 6132 6167 -17 7 813 249 274 24 12 chr11 29989781 29989866 -91853990 - MER45A DNA Tip100 -1 177 92 7 813 577 221 49 14 chr11 29990169 29990311 -91853545 + B1_Mur3 SINE Alu 1 147 -2 7 813 352 286 136 0 chr11 29990444 29990584 -91853272 - RMER15 LTR ERVL -16 559 401 7 813 351 0 0 0 chr11 29991536 29991575 -91852281 + (CATA)n Simple_repeat Simple_repeat 1 39 0 7 813 1132 135 124 10 chr11 29992295 29992497 -91851359 - URR1B DNA MER1_type 0 225 1 7 813 2372 191 38 40 chr11 29993160 29993689 -91850167 - RLTR11A LTR ERVK 0 528 1 7 813 389 287 27 27 chr11 29993809 29993920 -91849936 + PB1D7 SINE Alu 1 111 -9 7 813 572 188 0 0 chr11 29993922 29994023 -91849833 + B3 SINE B2 8 108 -108 7 813 792 238 172 4 chr11 29994322 29994554 -91849302 + MTD LTR MaLR 1 271 -148 7 813 304 276 56 19 chr11 29994906 29995013 -91848843 - MTEb LTR MaLR 0 379 269 7 813 1478 37 21 11 chr11 29995648 29995837 -91848019 - B2_Mm1a SINE B2 -1 192 2 7 813 999 120 220 0 chr11 29996622 29996813 -91847043 + ORR1B1 LTR MaLR 1 233 -161 7 813 631 202 109 12 chr11 29996814 29996979 -91846877 + B2_Mm2 SINE B2 15 195 0 7 813 1031 147 1 43 chr11 29996962 29997163 -91846693 + ORR1B1 LTR MaLR 140 393 -1 7 813 915 203 0 73 chr11 29997194 29997412 -91846444 - B3 SINE B2 -11 205 4 7 813 479 141 0 0 chr11 29997633 29997711 -91846145 + B1_Mus1 SINE Alu 37 114 -34 7 813 747 131 55 0 chr11 29998198 29998343 -91845513 - URR1A DNA MER1_type -6 220 68 7 813 654 25 0 0 chr11 29999252 29999332 -91844524 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 813 21 0 0 0 chr11 30000341 30000362 -91843494 + AT_rich Low_complexity Low_complexity 1 21 0 1 813 195 100 0 0 chr11 30000363 30000393 -91843463 + (A)n Simple_repeat Simple_repeat 1 30 0 2 813 207 171 0 0 chr11 30000525 30000560 -91843296 + CT-rich Low_complexity Low_complexity 3 37 0 3 813 521 287 19 19 chr11 30001046 30001206 -91842650 - RSINE1 SINE B4 -4 161 2 4 813 23 0 0 0 chr11 30001715 30001738 -91842118 + AT_rich Low_complexity Low_complexity 1 23 0 5 813 823 189 35 0 chr11 30001741 30001884 -91841972 + B1_Mur3 SINE Alu 2 149 0 6 813 200 111 22 0 chr11 30001889 30001934 -91841922 + (CAAAC)n Simple_repeat Simple_repeat 1 46 0 7 813 332 320 7 66 chr11 30002529 30002666 -91841190 - RSINE1 SINE B4 -29 136 8 8 813 351 179 0 0 chr11 30007468 30007535 -91836321 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 9 813 219 309 0 0 chr11 30009169 30009224 -91834632 + GA-rich Low_complexity Low_complexity 1 55 0 1 813 997 52 0 0 chr11 30009699 30009833 -91834023 - B1_Mm SINE Alu -8 139 6 1 813 380 258 0 105 chr11 30009726 30009869 -91833987 - MT2B LTR ERVL -337 264 137 1 813 306 125 11 64 chr11 30012113 30012207 -91831649 + GA-rich Low_complexity Low_complexity 3 91 0 1 813 473 234 80 7 chr11 30012228 30012366 -91831490 - B1_Mur2 SINE Alu 0 149 2 1 813 776 197 57 57 chr11 30012367 30012561 -91831295 - B3A SINE B2 -2 196 3 1 813 392 106 0 0 chr11 30012596 30012665 -91831191 - B1_Mm SINE Alu 0 147 49 1 813 361 296 259 0 chr11 30013538 30013754 -91830102 + MER2 DNA MER2_type 50 321 -24 1 101 331 316 38 25 chr11 30015341 30015500 -91828356 + RSINE1 SINE B4 2 162 -3 1 814 488 59 15 0 chr11 30015637 30015705 -91828151 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 814 769 200 21 0 chr11 30015705 30015845 -91828011 - B1_Mur2 SINE Alu -6 143 1 2 814 507 164 8 68 chr11 30019876 30019994 -91823862 + PB1D9 SINE Alu 10 120 0 2 814 279 140 0 0 chr11 30019995 30020045 -91823811 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 814 286 283 9 0 chr11 30020045 30020151 -91823705 + (TA)n Simple_repeat Simple_repeat 1 107 0 2 814 621 0 0 0 chr11 30020153 30020222 -91823634 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2 814 451 301 44 15 chr11 30020226 30020361 -91823495 + B1F SINE Alu 1 139 -10 2 814 468 222 76 62 chr11 30022492 30022636 -91821220 + B1_Mm SINE Alu 1 146 -1 2 814 284 246 492 15 chr11 30022683 30022880 -91820976 - B4 SINE B4 0 292 2 2 814 620 256 122 0 chr11 30022890 30023046 -91820810 - B3 SINE B2 -34 182 8 2 814 1062 160 28 11 chr11 30023072 30023249 -91820607 - B2_Mm2 SINE B2 -14 181 2 2 814 843 188 0 0 chr11 30025406 30025550 -91818306 + B1_Mur4 SINE Alu 7 150 0 3 814 306 164 0 0 chr11 30026871 30026926 -91816930 + A-rich Low_complexity Low_complexity 1 55 0 3 814 198 103 0 0 chr11 30027283 30027312 -91816544 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 814 249 33 0 0 chr11 30027922 30027952 -91815904 + (CATA)n Simple_repeat Simple_repeat 4 33 0 3 814 593 85 106 0 chr11 30028874 30028968 -91814888 - B2_Mm2 SINE B2 -89 106 3 3 814 729 250 102 5 chr11 30028977 30029174 -91814682 - B3 SINE B2 0 216 1 3 814 24 0 0 0 chr11 30029670 30029694 -91814162 + AT_rich Low_complexity Low_complexity 1 24 0 3 814 481 202 48 0 chr11 30030090 30030174 -91813682 - B1_Mur3 SINE Alu -61 88 1 3 814 451 273 112 29 chr11 30030675 30030845 -91813011 + ID_B1 SINE B4 1 184 -40 3 814 307 42 62 0 chr11 30031133 30031181 -91812675 + B1_Mus1 SINE Alu 1 51 -97 3 814 222 111 109 18 chr11 30031176 30031231 -91812625 + B1_Mur3 SINE Alu 90 149 0 4 814 324 70 0 0 chr11 30031233 30031276 -91812580 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 814 226 314 115 19 chr11 30031846 30031950 -91811906 + PB1D9 SINE Alu 7 120 0 4 814 237 176 0 19 chr11 30032206 30032258 -91811598 + MTC LTR MaLR 6 56 -365 4 814 2010 262 92 99 chr11 30032243 30033369 -91810487 + MTD-int LTR MaLR 137 1254 -4 4 814 1949 180 60 20 chr11 30033375 30033778 -91810078 + MTD LTR MaLR 1 419 0 4 814 336 100 0 0 chr11 30034301 30034351 -91809505 - B1_Mur3 SINE Alu -15 134 85 4 814 234 206 0 0 chr11 30034376 30034439 -91809417 + GA-rich Low_complexity Low_complexity 2 64 0 4 814 422 179 73 10 chr11 30034443 30034539 -91809317 + B1_Mus2 SINE Alu 40 141 -6 4 814 368 20 0 0 chr11 30039734 30039784 -91804072 + B1_Mus1 SINE Alu 7 56 -92 4 814 291 175 0 0 chr11 30039737 30039794 -91804062 + ID_B1 SINE B4 90 146 -78 4 814 180 77 0 0 chr11 30039815 30039841 -91804015 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 814 1283 116 15 50 chr11 30039847 30040047 -91803809 + B2_Mm2 SINE B2 2 194 -1 5 814 1316 178 4 4 chr11 30044514 30044740 -91799116 + URR1A DNA MER1_type 1 226 0 5 814 364 312 27 0 chr11 30045403 30045515 -91798341 - PB1D10 SINE Alu -2 115 1 5 814 399 21 0 0 chr11 30046088 30046136 -91797720 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 814 261 0 0 0 chr11 30046136 30046164 -91797692 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 814 267 31 0 0 chr11 30050078 30050110 -91793746 + (A)n Simple_repeat Simple_repeat 1 32 0 5 814 369 280 52 35 chr11 30050436 30050610 -91793246 - B3A SINE B2 -9 189 13 5 814 1067 119 12 0 chr11 30050852 30051020 -91792836 + B2_Mm1t SINE B2 2 171 -22 5 814 315 67 414 28 chr11 30051086 30051192 -91792664 + B2_Mm2 SINE B2 47 193 -2 5 814 33 0 0 0 chr11 30051209 30051242 -91792614 + AT_rich Low_complexity Low_complexity 1 33 0 6 814 1853 85 0 4 chr11 30052096 30052356 -91791500 + ORR1A2 LTR MaLR 67 325 -2 6 814 383 280 105 48 chr11 30052701 30052825 -91791031 - ID_B1 SINE B4 -8 216 86 6 814 349 299 9 9 chr11 30054617 30054725 -91789131 + PB1D10 SINE Alu 6 113 -4 6 814 576 199 222 6 chr11 30054834 30054996 -91788860 + B3 SINE B2 2 198 -18 6 814 650 168 119 22 chr11 30055533 30055667 -91788189 + B1_Mus2 SINE Alu 1 147 0 6 814 268 24 24 24 chr11 30055709 30055751 -91788105 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 6 814 486 0 0 0 chr11 30055896 30055950 -91787906 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 814 504 0 0 0 chr11 30057328 30057384 -91786472 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 814 390 276 19 0 chr11 30057422 30057527 -91786329 + PB1D7 SINE Alu 14 120 0 6 814 696 146 81 0 chr11 30057528 30057651 -91786205 + B1_Mur4 SINE Alu 4 136 -14 7 814 194 33 0 62 chr11 30057655 30057687 -91786169 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 814 313 225 0 14 chr11 30059688 30059760 -91784096 - tRNA-Lys-AAG tRNA tRNA -5 71 1 7 814 225 0 0 0 chr11 30061003 30061028 -91782828 + (A)n Simple_repeat Simple_repeat 1 25 0 7 814 504 313 48 6 chr11 30061543 30061710 -91782146 + MER20 DNA MER1_type 13 186 -33 7 814 348 138 52 0 chr11 30062425 30062483 -91781373 + ID4_ SINE ID 5 65 -18 7 814 244 345 22 33 chr11 30064023 30064113 -91779743 - B1F1 SINE Alu -60 89 1 7 814 466 182 127 40 chr11 30065035 30065161 -91778695 - B1_Mur3 SINE Alu -10 139 3 7 814 351 136 0 0 chr11 30065428 30065487 -91778369 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 814 751 231 122 16 chr11 30065523 30065712 -91778144 + B3 SINE B2 1 209 -7 7 814 333 346 68 23 chr11 30065735 30065868 -91777988 + RSINE1 SINE B4 5 143 -22 8 814 183 80 0 0 chr11 30065889 30065914 -91777942 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 814 947 197 63 19 chr11 30065951 30066158 -91777698 + B3 SINE B2 1 216 0 8 814 675 262 71 19 chr11 30067527 30067737 -91776119 + B4 SINE B4 54 274 -18 8 814 293 208 0 19 chr11 30067913 30067967 -91775889 - ID4_ SINE ID -16 67 15 8 814 346 189 127 18 chr11 30067978 30068090 -91775766 - B1F1 SINE Alu -7 142 10 8 814 436 252 285 0 chr11 30068847 30068970 -91774886 + RSINE1 SINE B4 2 159 -6 8 814 415 249 319 0 chr11 30069050 30069219 -91774637 + ID_B1 SINE B4 2 224 0 8 814 7181 57 0 0 chr11 30069329 30070207 -91773649 + L1Md_T LINE L1 5705 6582 0 8 814 451 238 64 29 chr11 30070715 30070888 -91772968 - ORR1D2 LTR MaLR -191 179 1 8 814 410 263 215 15 chr11 30070935 30071070 -91772786 + RSINE1 SINE B4 4 165 0 9 814 26 0 0 0 chr11 30071074 30071100 -91772756 + AT_rich Low_complexity Low_complexity 1 26 0 9 814 21 0 0 0 chr11 30072230 30072251 -91771605 + AT_rich Low_complexity Low_complexity 1 21 0 9 814 302 284 132 41 chr11 30073768 30073889 -91769967 - ID_B1 SINE B4 -53 171 40 9 814 5479 87 16 4 chr11 30073955 30073973 -91769883 + Lx2 LINE L1 5123 5138 -745 9 814 5674 78 38 1 chr11 30073973 30074728 -91769128 - L1_Mus2 LINE L1 -1 6565 5783 9 814 5479 88 16 4 chr11 30074728 30075494 -91768362 + Lx2 LINE L1 5139 5916 -1081 9 814 258 286 16 20 chr11 30075677 30075785 -91768071 + B1F SINE Alu 12 117 0 9 814 198 0 0 0 chr11 30076793 30076815 -91767041 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 814 351 0 0 0 chr11 30078286 30078325 -91765531 + (TAAAAA)n Simple_repeat Simple_repeat 4 42 0 9 814 554 164 67 60 chr11 30078644 30078793 -91765063 + B1_Mur4 SINE Alu 1 150 0 9 814 198 0 0 0 chr11 30078795 30078817 -91765039 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 814 1400 89 0 5 chr11 30078831 30079022 -91764834 + B2_Mm2 SINE B2 1 190 -5 1 814 1093 75 0 33 chr11 30079121 30079272 -91764584 - B1_Mus1 SINE Alu 0 148 3 1 814 264 272 87 10 chr11 30079762 30079866 -91763990 + MIR SINE MIR 40 151 -111 1 814 691 286 25 88 chr11 30081931 30082169 -91761687 + B4 SINE B4 1 223 -69 1 814 536 222 47 88 chr11 30082178 30082326 -91761530 + B1_Mur2 SINE Alu 2 143 -6 1 814 242 245 0 0 chr11 30082378 30082431 -91761425 + B1F SINE Alu 12 64 -85 1 814 181 213 295 0 chr11 30083340 30083401 -91760455 + MIR SINE MIR 62 140 -68 1 814 480 111 0 0 chr11 30084207 30084279 -91759577 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 814 858 186 164 26 chr11 30085284 30085621 -91758235 + MTD LTR MaLR 1 411 -8 1 814 960 157 146 10 chr11 30086316 30086515 -91757341 + URR1A DNA MER1_type 1 226 0 1 814 22 35 0 0 chr11 30086533 30086562 -91757294 + AT_rich Low_complexity Low_complexity 1 29 0 1 814 392 362 31 0 chr11 30087874 30088034 -91755822 + RSINE1 SINE B4 1 165 0 1 814 210 154 0 0 chr11 30088201 30088240 -91755616 + A-rich Low_complexity Low_complexity 1 39 0 1 814 818 152 172 11 chr11 30088500 30088680 -91755176 + B3 SINE B2 5 213 -3 1 814 1112 93 35 6 chr11 30088674 30088846 -91755010 + B2_Mm2 SINE B2 9 185 -10 1 814 321 275 326 0 chr11 30088918 30088946 -91754910 - B3 SINE B2 -3 213 186 1 814 530 114 11 0 chr11 30088946 30089034 -91754822 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 814 321 275 326 0 chr11 30089034 30089143 -91754713 - B3 SINE B2 -31 185 33 1 814 1177 74 0 7 chr11 30089144 30089293 -91754563 + B1_Mus1 SINE Alu 1 148 0 1 814 264 213 0 0 chr11 30089329 30089376 -91754480 - B3 SINE B2 -169 47 1 1 814 645 223 0 30 chr11 30089555 30089689 -91754167 + B1_Mur1 SINE Alu 2 131 -18 1 814 327 299 19 0 chr11 30089944 30090051 -91753805 - MER5A1 DNA MER1_type -3 163 55 1 814 293 82 0 0 chr11 30090961 30091010 -91752846 + B1_Mur4 SINE Alu 102 150 0 1 814 280 323 81 31 chr11 30091495 30091655 -91752201 - MER5A DNA MER1_type -12 177 10 1 814 374 299 161 7 chr11 30092829 30092984 -91750872 + B3 SINE B2 37 215 -1 1 814 894 199 39 34 chr11 30092988 30093196 -91750660 + B3 SINE B2 2 210 -6 1 814 760 210 14 0 chr11 30093385 30093528 -91750328 + B1_Mur4 SINE Alu 5 149 -1 1 814 331 282 183 25 chr11 30093596 30093716 -91750140 + ID_B1 SINE B4 79 217 -7 1 814 444 312 50 0 chr11 30093941 30094082 -91749774 + B3A SINE B2 1 148 -50 1 814 468 0 0 0 chr11 30094092 30094144 -91749712 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 814 1081 86 0 0 chr11 30095368 30095507 -91748349 + B1_Mus2 SINE Alu 1 139 -8 1 814 207 0 0 0 chr11 30095507 30095530 -91748326 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 814 1033 75 0 0 chr11 30096043 30096176 -91747680 - B1_Mus1 SINE Alu -15 133 1 1 814 405 0 0 0 chr11 30097345 30097390 -91746466 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 814 513 0 0 0 chr11 30097390 30097446 -91746410 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 814 207 200 0 0 chr11 30098123 30098158 -91745698 + polypurine Low_complexity Low_complexity 1 35 0 1 814 223 315 53 21 chr11 30099129 30099223 -91744633 + B1F2 SINE Alu 45 141 -8 1 814 1874 150 52 25 chr11 30102157 30102519 -91741337 + ORR1D1 LTR MaLR 1 372 -2 1 814 575 234 23 8 chr11 30102576 30102705 -91741151 + B1_Mur1 SINE Alu 12 142 -7 1 814 419 277 18 0 chr11 30103501 30103613 -91740243 - PB1D7 SINE Alu -6 114 1 1 814 414 299 93 26 chr11 30103885 30104036 -91739820 + RSINE1 SINE B4 2 162 -3 1 814 531 0 0 0 chr11 30105271 30105330 -91738526 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 814 1371 93 16 0 chr11 30106532 30106715 -91737141 - B2_Mm2 SINE B2 -9 186 1 1 814 645 303 22 0 chr11 30107574 30107752 -91736104 - ID_B1 SINE B4 -14 210 29 1 814 672 277 107 43 chr11 30108064 30108253 -91735603 + B4 SINE B4 40 245 -47 1 814 2048 152 64 20 chr11 30108253 30108643 -91735213 + MTB_Mm LTR MaLR 1 407 0 1 814 672 277 107 43 chr11 30108643 30108687 -91735169 + B4 SINE B4 246 288 -4 1 814 516 206 21 64 chr11 30108764 30108904 -91734952 + L1MB2 LINE L1 5773 5906 -265 1 814 249 299 62 23 chr11 30109375 30109505 -91734351 + L1MB2 LINE L1 5978 6112 -59 1 814 24 0 0 0 chr11 30109520 30109544 -91734312 + AT_rich Low_complexity Low_complexity 1 24 0 1 814 414 85 0 0 chr11 30109941 30110000 -91733856 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 814 245 235 12 36 chr11 30110547 30110631 -91733225 - BC1_Mm scRNA scRNA -42 110 29 1 814 366 113 48 16 chr11 30112013 30112076 -91731780 + B1_Mus2 SINE Alu 6 70 -77 1 814 289 247 13 27 chr11 30112076 30112088 -91731768 + ID_B1 SINE B4 87 160 -64 1 814 390 42 0 0 chr11 30114206 30114254 -91729602 + (TGG)n Simple_repeat Simple_repeat 2 49 0 1 814 400 204 144 41 chr11 30114532 30114629 -91729227 + PB1D9 SINE Alu 9 115 -5 1 814 346 285 64 30 chr11 30115227 30115353 -91728503 - MLT1A0 LTR MaLR -243 131 4 1 814 473 281 64 36 chr11 30115436 30115576 -91728280 - B1F2 SINE Alu -5 144 1 1 814 429 299 82 0 chr11 30116653 30116787 -91727069 - B1F1 SINE Alu 0 147 3 1 814 576 251 9 10 chr11 30116808 30116935 -91726921 - B1_Mur2 SINE Alu 0 120 2 1 814 803 184 49 14 chr11 30117792 30117935 -91725921 - B1_Mus1 SINE Alu 0 148 1 1 814 514 259 9 0 chr11 30117996 30118108 -91725748 - RSINE1 SINE B4 -14 151 39 1 814 23 0 0 0 chr11 30118269 30118292 -91725564 + AT_rich Low_complexity Low_complexity 1 23 0 1 814 883 189 7 7 chr11 30118500 30118639 -91725217 - B1_Mur1 SINE Alu -9 140 2 1 814 216 271 56 14 chr11 30119887 30119958 -91723898 + MIR SINE MIR 32 105 -157 1 814 860 140 87 14 chr11 30120048 30120186 -91723670 + B1_Mur4 SINE Alu 3 150 0 1 814 981 228 53 54 chr11 30121293 30121690 -91722166 + RMER2 LTR ERV1 17 474 -93 1 814 580 178 9 47 chr11 30123057 30123076 -91720780 + B1_Mur4 SINE Alu 48 64 -86 1 814 1219 49 0 7 chr11 30123076 30123220 -91720636 + B1_Mus2 SINE Alu 2 144 -3 1 814 612 116 12 0 chr11 30123220 30123306 -91720550 + B1_Mus2 SINE Alu 60 146 -1 1 814 2817 118 22 7 chr11 30123435 30123838 -91720018 - Lx LINE L1 -12 6642 6234 1 814 551 297 71 11 chr11 30124684 30124868 -91718988 + B3A SINE B2 1 195 -3 1 814 1289 48 0 7 chr11 30125185 30125333 -91718523 + B1_Mus2 SINE Alu 1 147 0 1 814 225 119 0 0 chr11 30125338 30125380 -91718476 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 814 3602 94 0 8 chr11 30128143 30128701 -91715155 - L1_Mm LINE L1 -84 5802 5270 1 814 720 235 5 44 chr11 30128786 30128813 -91715043 - L1_Mur3 LINE L1 -552 5328 5308 1 814 749 45 27 9 chr11 30128813 30128925 -91714931 - L1Md_F3 LINE L1 -1 6583 6470 1 814 1245 102 0 0 chr11 30128925 30129102 -91714754 - L1_Mm LINE L1 -570 5313 5137 1 814 6447 75 0 1 chr11 30129102 30129881 -91713975 + L1_Mus2 LINE L1 5785 6562 -4 1 814 831 167 76 0 chr11 30129896 30130040 -91713816 - B3 SINE B2 -61 155 1 1 814 1059 8 0 0 chr11 30132590 30132710 -91711146 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 814 268 224 40 0 chr11 30132886 30132962 -91710894 - Charlie18a DNA MER1_type -10 332 254 1 814 269 208 68 14 chr11 30133225 30133298 -91710558 - MER3 DNA MER1_type -51 158 82 1 814 827 182 0 42 chr11 30134489 30134632 -91709224 - B1_Mur4 SINE Alu -9 141 5 1 814 23 54 0 0 chr11 30134959 30134996 -91708860 + AT_rich Low_complexity Low_complexity 1 37 0 1 814 206 91 91 0 chr11 30135029 30135073 -91708783 + (CAAAC)n Simple_repeat Simple_repeat 1 48 0 1 814 3561 201 102 94 chr11 30135419 30136470 -91707386 + RMER1B Other Other 8 1066 0 1 814 21 36 0 0 chr11 30136597 30136625 -91707231 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 255 189 0 0 chr11 30137584 30137637 -91706219 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 814 516 250 0 16 chr11 30137721 30137843 -91706013 - PB1D9 SINE Alu 0 120 1 1 814 264 246 53 40 chr11 30137845 30137921 -91705935 - PB1 SINE Alu -2 125 49 1 814 963 165 71 48 chr11 30138046 30138256 -91705600 - B3 SINE B2 0 216 2 1 814 220 315 0 0 chr11 30138675 30138729 -91705127 + PB1 SINE Alu 72 125 -2 1 814 272 273 15 29 chr11 30138739 30138807 -91705049 + ID4 SINE ID 2 68 -15 1 814 349 246 0 0 chr11 30139064 30139129 -91704727 + ID4_ SINE ID 16 80 -3 1 814 25 51 0 0 chr11 30139547 30139586 -91704270 + AT_rich Low_complexity Low_complexity 1 39 0 1 814 919 191 14 0 chr11 30139606 30139753 -91704103 + B1_Mur3 SINE Alu 1 149 0 1 814 950 81 84 39 chr11 30139769 30139923 -91703933 + B2_Mm2 SINE B2 7 167 -28 1 814 536 196 63 132 chr11 30139975 30140134 -91703722 - B1_Mus1 SINE Alu 0 148 1 1 814 21 0 0 0 chr11 30140207 30140228 -91703628 + AT_rich Low_complexity Low_complexity 1 21 0 1 814 231 188 20 59 chr11 30140659 30140710 -91703146 + MER5B DNA MER1_type 1 49 -129 1 814 410 304 148 6 chr11 30140919 30141081 -91702775 + ID_B1 SINE B4 12 196 -28 1 814 829 220 178 24 chr11 30141080 30141327 -91702529 + ORR1D1 LTR MaLR 81 365 -9 1 814 23 54 0 0 chr11 30142393 30142430 -91701426 + AT_rich Low_complexity Low_complexity 1 37 0 2 814 378 286 56 28 chr11 30142530 30142616 -91701240 + MER5B DNA MER1_type 30 119 -59 1 814 1405 58 5 64 chr11 30142616 30142818 -91701038 - B2_Mm2 SINE B2 -5 190 1 2 814 378 286 56 28 chr11 30142818 30142875 -91700981 + MER5B DNA MER1_type 120 177 -1 1 814 216 0 0 0 chr11 30143054 30143078 -91700778 + (A)n Simple_repeat Simple_repeat 1 24 0 2 814 270 232 193 53 chr11 30144079 30144229 -91699627 + MER53 DNA hAT 9 179 -14 2 814 4006 198 76 20 chr11 30144695 30145653 -91698203 - RMER1A Other Other -4 1338 1 2 814 264 274 53 27 chr11 30145805 30145880 -91697976 + BLACKJACK DNA AcHobo 1 77 -2867 2 814 255 61 0 0 chr11 30146386 30146419 -91697437 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 101 446 224 10 20 chr11 30146462 30146562 -91697294 - B3 SINE B2 -115 101 3 2 815 1462 70 10 29 chr11 30146776 30146982 -91696874 - L1_Mus3 LINE L1 -4 6634 6433 2 815 1143 235 34 44 chr11 30147403 30147697 -91696159 + B4A SINE B4 2 292 0 2 815 240 35 0 0 chr11 30147698 30147727 -91696129 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2 815 192 77 0 0 chr11 30148508 30148534 -91695322 + (A)n Simple_repeat Simple_repeat 1 26 0 2 815 977 227 189 4 chr11 30148705 30148948 -91694908 + B4A SINE B4 1 288 -4 2 815 228 354 24 0 chr11 30149563 30149645 -91694211 + MLT1I LTR MaLR 246 329 -82 2 815 352 345 51 32 chr11 30150577 30150676 -91693180 - MIR SINE MIR -38 224 120 2 815 2144 168 64 13 chr11 30150676 30151069 -91692787 - MTC LTR MaLR -4 417 5 2 815 352 345 51 32 chr11 30151069 30151185 -91692671 - MIR SINE MIR -143 119 5 2 815 23 33 0 0 chr11 30152230 30152260 -91691596 + AT_rich Low_complexity Low_complexity 1 30 0 2 815 14582 78 11 8 chr11 30152779 30155557 -91688299 - L1VL2 LINE L1 -626 2989 200 2 815 586 213 258 18 chr11 30155821 30155988 -91687868 - MTD LTR MaLR -212 207 1 2 815 236 282 66 41 chr11 30159274 30159396 -91684460 + L1ME4a LINE L1 5988 6112 -12 2 815 561 262 27 27 chr11 30159420 30159569 -91684287 + B1F SINE Alu 1 149 0 2 815 486 0 0 0 chr11 30159618 30159672 -91684184 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 815 862 203 18 3 chr11 30159739 30159913 -91683943 - B3 SINE B2 -26 190 2 2 815 727 278 17 73 chr11 30159913 30160054 -91683802 - B4 SINE B4 -66 226 93 2 815 3159 63 0 0 chr11 30160054 30160433 -91683423 + L1Md_T LINE L1 6204 6582 0 2 815 2107 57 0 0 chr11 30160433 30160678 -91683178 - L1_Mus1 LINE L1 -6 6561 6317 2 815 727 278 17 73 chr11 30160678 30160764 -91683092 - B4 SINE B4 -200 92 12 2 815 996 122 0 0 chr11 30161156 30161435 -91682421 + (CA)n Simple_repeat Simple_repeat 1 279 0 2 815 370 316 16 49 chr11 30161435 30161558 -91682298 + RSINE1 SINE B4 45 163 -2 2 815 24 0 0 0 chr11 30161558 30161582 -91682274 + AT_rich Low_complexity Low_complexity 1 24 0 2 815 522 32 0 0 chr11 30162245 30162307 -91681549 + B1_Mus2 SINE Alu 80 141 -6 2 815 216 0 0 0 chr11 30162309 30162333 -91681523 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2 815 262 258 144 0 chr11 30162368 30162552 -91681304 + L1M5 LINE L1 5224 5431 -742 2 815 1251 55 141 0 chr11 30162588 30162751 -91681105 - B2_Mm2 SINE B2 -9 186 1 2 815 273 322 87 52 chr11 30162825 30163077 -91680779 + L1M5 LINE L1 5561 5821 -419 2 815 24 67 0 0 chr11 30163120 30163165 -91680691 + AT_rich Low_complexity Low_complexity 1 45 0 2 815 317 241 31 132 chr11 30163668 30163797 -91680059 - RSINE1 SINE B4 -3 162 47 2 815 22 0 0 0 chr11 30163970 30163992 -91679864 + AT_rich Low_complexity Low_complexity 1 22 0 2 815 615 240 8 23 chr11 30164018 30164146 -91679710 - B3A SINE B2 -72 126 1 2 815 201 108 0 0 chr11 30164763 30164800 -91679056 + (A)n Simple_repeat Simple_repeat 1 37 0 2 815 23 0 0 0 chr11 30165188 30165211 -91678645 + AT_rich Low_complexity Low_complexity 1 23 0 2 815 455 117 48 30 chr11 30165285 30165452 -91678404 + (CA)n Simple_repeat Simple_repeat 2 171 0 2 815 417 166 50 32 chr11 30165493 30165835 -91678021 + (CA)n Simple_repeat Simple_repeat 1 347 0 2 815 210 184 56 37 chr11 30165864 30165971 -91677885 + (CA)n Simple_repeat Simple_repeat 1 109 0 2 815 21 36 0 0 chr11 30168184 30168212 -91675644 + GC_rich Low_complexity Low_complexity 1 28 0 2 815 239 150 17 0 chr11 30168229 30168289 -91675567 + G-rich Low_complexity Low_complexity 6 66 0 2 815 375 151 0 0 chr11 30170127 30170220 -91673636 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 2 815 1167 75 0 6 chr11 30170220 30170382 -91673474 - B2_Mm2 SINE B2 -33 162 2 2 815 370 304 9 9 chr11 30170637 30170753 -91673103 - PB1D7 SINE Alu 0 120 5 2 815 469 200 165 0 chr11 30171529 30171644 -91672212 + ID_B1 SINE B4 85 218 -6 2 815 180 0 0 0 chr11 30171821 30171841 -91672015 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 815 783 184 14 0 chr11 30171994 30172141 -91671715 - B1_Mur4 SINE Alu 0 150 2 2 815 1075 261 163 45 chr11 30172141 30172862 -91670994 + L1MB5 LINE L1 5273 6087 -87 2 815 318 245 67 58 chr11 30172898 30173002 -91670854 + B1F2 SINE Alu 3 107 -42 2 815 26 50 0 0 chr11 30173096 30173136 -91670720 + AT_rich Low_complexity Low_complexity 1 40 0 2 815 396 244 57 8 chr11 30173448 30173572 -91670284 + Charlie5 DNA MER1_type 20 149 -2475 2 815 719 176 7 72 chr11 30173781 30173934 -91669922 - B1_Mur3 SINE Alu -1 148 6 2 815 286 321 0 0 chr11 30173982 30174063 -91669793 - B4 SINE B4 -210 82 2 2 815 1185 101 116 0 chr11 30174652 30174850 -91669006 - URR1A DNA MER1_type 0 226 6 2 815 251 311 43 22 chr11 30175137 30175229 -91668627 - PB1D10 SINE Alu -19 98 5 2 815 21 0 0 0 chr11 30175295 30175316 -91668540 + AT_rich Low_complexity Low_complexity 1 21 0 2 815 459 316 99 46 chr11 30176437 30176699 -91667157 + B4 SINE B4 3 278 -14 2 815 809 282 17 74 chr11 30176759 30177058 -91666798 + B4A SINE B4 5 286 -6 2 815 346 324 44 82 chr11 30177145 30177303 -91666553 + RSINE1 SINE B4 3 154 -11 2 815 28 0 0 0 chr11 30177342 30177370 -91666486 + AT_rich Low_complexity Low_complexity 1 28 0 2 815 3154 212 98 70 chr11 30177906 30178814 -91665042 + Lx9 LINE L1 6711 7643 -1 2 815 255 61 0 0 chr11 30178817 30178850 -91665006 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 2 815 292 371 29 0 chr11 30178863 30178968 -91664888 + ID_B1 SINE B4 86 193 -31 2 815 356 167 25 50 chr11 30181648 30181935 -91661921 + CT-rich Low_complexity Low_complexity 1 279 0 2 815 2176 35 0 4 chr11 30182418 30182678 -91661178 + L1Md_F2 LINE L1 6323 6581 -1 2 815 245 271 162 36 chr11 30182888 30182999 -91660857 - ORR1E LTR MaLR -229 130 6 2 815 1809 164 107 0 chr11 30183286 30183640 -91660216 - MTD LTR MaLR -10 409 18 2 815 210 118 0 0 chr11 30183640 30183674 -91660182 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 2 815 204 213 16 47 chr11 30184171 30184235 -91659621 + MIR3 SINE MIR 131 192 -16 2 815 2048 140 6 3 chr11 30184591 30184907 -91658949 - Lx4B LINE L1 -458 6600 6284 2 815 207 0 0 0 chr11 30184907 30184930 -91658926 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 815 638 158 70 0 chr11 30184937 30185051 -91658805 - B1_Mur2 SINE Alu -20 129 8 2 815 787 266 25 45 chr11 30185080 30185281 -91658575 - B3A SINE B2 0 198 2 2 815 21 0 0 0 chr11 30185399 30185420 -91658436 + AT_rich Low_complexity Low_complexity 1 21 0 2 815 329 250 41 82 chr11 30185866 30185988 -91657868 - PB1D10 SINE Alu 0 117 1 2 815 387 259 146 15 chr11 30186038 30186175 -91657681 - RSINE1 SINE B4 0 165 11 2 815 216 0 0 0 chr11 30186313 30186337 -91657519 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 815 1078 197 0 24 chr11 30186841 30187054 -91656802 + B3 SINE B2 9 216 0 2 815 233 229 77 68 chr11 30187625 30187742 -91656114 + MamRep605 Unknown Unknown 75 192 -684 2 815 384 219 75 19 chr11 30187800 30187907 -91655949 - PB1D7 SINE Alu 0 120 8 2 815 416 262 83 18 chr11 30187819 30187928 -91655928 - ID_B1 SINE B4 -39 185 70 2 815 226 284 54 0 chr11 30188064 30188138 -91655718 - PB1D10 SINE Alu -34 83 6 2 815 274 258 165 24 chr11 30190320 30190447 -91653409 - MIR SINE MIR -1 261 117 2 815 191 61 30 0 chr11 30190447 30190480 -91653376 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 2 815 259 338 15 22 chr11 30192175 30192311 -91651545 + CT-rich Low_complexity Low_complexity 3 137 0 2 815 700 116 0 24 chr11 30193194 30193301 -91650555 + (TTTC)n Simple_repeat Simple_repeat 1 106 0 2 815 1368 62 0 0 chr11 30193301 30193480 -91650376 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 2 815 700 116 0 24 chr11 30193480 30193496 -91650360 + (TTTC)n Simple_repeat Simple_repeat 2 16 0 2 815 523 230 0 90 chr11 30193511 30193645 -91650211 - ID_B1 SINE B4 -17 207 86 2 815 198 71 0 0 chr11 30193660 30193688 -91650168 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 815 543 286 70 16 chr11 30193755 30193940 -91649916 - RMER30 DNA MER1_type -7 195 1 2 815 1328 279 113 28 chr11 30194180 30194748 -91649108 - L1ME3A LINE L1 -8 6165 5550 2 815 369 95 0 0 chr11 30194822 30194885 -91648971 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 815 704 164 22 60 chr11 30194906 30195088 -91648768 - ORR1C2 LTR MaLR 0 384 210 2 815 10371 118 26 27 chr11 30195151 30197320 -91646536 + L1VL4 LINE L1 203 2389 -1170 2 815 28575 143 19 40 chr11 30197330 30201489 -91642367 + L1_Mus4 LINE L1 399 4457 -1426 2 815 928 144 0 40 chr11 30201489 30201641 -91642215 + B1_Mus1 SINE Alu 1 146 -2 2 815 28575 126 14 35 chr11 30201641 30201938 -91641918 + L1_Mus4 LINE L1 4458 4733 -1150 2 815 288 0 0 0 chr11 30201938 30201970 -91641886 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 815 28575 126 14 35 chr11 30201970 30202175 -91641681 + L1_Mus4 LINE L1 4734 4928 -955 2 815 180 0 0 0 chr11 30202175 30202195 -91641661 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2 815 365 77 0 0 chr11 30202195 30202247 -91641609 - B2_Mm1a SINE B2 -33 160 109 3 815 408 131 0 28 chr11 30202237 30202308 -91641548 - B2_Mm2 SINE B2 -126 69 1 3 815 28575 112 22 17 chr11 30202308 30203996 -91639860 + L1_Mus4 LINE L1 4990 6636 0 2 815 397 174 0 14 chr11 30204011 30204081 -91639775 - ORR1C2 LTR MaLR -305 69 1 2 815 355 318 81 19 chr11 30204102 30204317 -91639539 + MLT1B LTR MaLR 32 255 -119 3 815 2863 33 0 0 chr11 30204640 30205000 -91638856 + MT2C_Mm LTR ERVL 1 360 -115 3 815 2772 58 3 3 chr11 30205026 30205372 -91638484 - ORR1A1 LTR MaLR 0 346 1 3 815 235 340 0 65 chr11 30205372 30205479 -91638377 + MLT1B LTR MaLR 175 274 -275 3 815 810 0 0 0 chr11 30205479 30205569 -91638287 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 815 1947 181 12 56 chr11 30205587 30206015 -91637841 - MTC LTR MaLR -8 413 5 3 815 456 258 0 0 chr11 30206375 30206464 -91637392 + B3A SINE B2 1 89 -109 3 815 279 0 0 0 chr11 30206526 30206557 -91637299 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 815 4428 83 127 3 chr11 30206568 30207215 -91636641 + L1_Mus3 LINE L1 5718 6445 -193 3 815 363 317 33 0 chr11 30208119 30208239 -91635617 + MER63B DNA AcHobo 313 436 0 3 815 432 0 0 0 chr11 30208412 30208460 -91635396 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 815 421 234 171 62 chr11 30208470 30208616 -91635240 - B3A SINE B2 -36 162 1 3 815 650 249 216 12 chr11 30209108 30209441 -91634415 + RMER10A LTR ERVL 12 412 -30 3 815 274 190 103 0 chr11 30210072 30210130 -91633726 - RLTR42-int LTR ERVK -3918 1604 1541 3 815 256 136 134 15 chr11 30210172 30210239 -91633617 - RLTR42-int LTR ERVK -5177 960 886 3 815 26 0 0 0 chr11 30210305 30210331 -91633525 + AT_rich Low_complexity Low_complexity 1 26 0 3 815 366 154 0 0 chr11 30210440 30210505 -91633351 - RMER10B LTR ERVL -333 65 1 3 815 3562 77 86 37 chr11 30211194 30211732 -91632124 + LTRIS2 LTR ERV1 1 564 0 3 815 2089 250 18 29 chr11 30212082 30212639 -91631217 + MuRRS4-int LTR ERV1 213 763 -4300 3 815 5214 114 16 16 chr11 30212624 30213393 -91630463 + RMER16-int LTR ERVK 677 1445 -3961 3 815 8555 133 24 17 chr11 30213379 30216631 -91627225 + MuRRS4-int LTR ERV1 750 4271 -792 3 815 1039 211 31 4 chr11 30216622 30216850 -91627006 + MuRRS4-int LTR ERV1 4788 5021 -42 3 815 3570 87 86 28 chr11 30216851 30217384 -91626472 + LTRIS2 LTR ERV1 1 564 0 3 815 198 0 0 0 chr11 30217652 30217674 -91626182 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 815 359 249 131 42 chr11 30218162 30218330 -91625526 + RLTR41 LTR ERV1 264 446 0 3 815 3867 47 2 15 chr11 30218380 30218429 -91625427 - RLTR1B LTR ERV1 0 512 470 3 815 2114 130 142 19 chr11 30218429 30218852 -91625004 + IAPLTR2_Mm LTR ERVK 1 475 0 3 815 3867 47 2 15 chr11 30218852 30219321 -91624535 - RLTR1B LTR ERV1 -43 469 1 3 815 634 168 82 22 chr11 30219470 30219604 -91624252 + B1_Mur1 SINE Alu 5 146 -3 3 815 1654 162 155 42 chr11 30219669 30220055 -91623801 - RLTR23 LTR ERV1 0 430 1 3 815 1820 330 42 49 chr11 30220444 30221716 -91622140 - MMERGLN-int LTR ERV1 -3307 4249 2987 3 815 694 305 87 36 chr11 30221860 30222268 -91621588 - RLTR6-int LTR ERV1 -6062 1716 1058 3 815 1656 204 41 107 chr11 30223237 30223580 -91620276 - RLTR23 LTR ERV1 0 430 77 3 815 1540 5 9 10 chr11 30223580 30223997 -91619859 + (TTC)n Simple_repeat Simple_repeat 1 417 -455 3 815 1540 5 9 10 chr11 30224002 30224454 -91619402 + (TTC)n Simple_repeat Simple_repeat 418 872 0 3 815 1656 204 41 107 chr11 30224454 30224557 -91619299 - RLTR23 LTR ERV1 -354 76 3 3 815 356 370 38 22 chr11 30226641 30226826 -91617030 - L2b LINE L2 -163 3212 3025 3 815 430 251 180 0 chr11 30227010 30227193 -91616663 + L1MB7 LINE L1 5953 6168 -16 3 815 411 272 44 0 chr11 30227601 30227715 -91616141 - PB1D9 SINE Alu -1 119 1 3 815 334 290 62 55 chr11 30227821 30227967 -91615889 + L2c LINE L2 3241 3387 0 3 815 409 337 92 38 chr11 30228022 30228284 -91615572 - L1M5 LINE L1 -465 5659 5384 3 815 659 305 20 0 chr11 30228284 30228435 -91615421 - B3A SINE B2 -42 156 3 3 815 27 81 0 0 chr11 30228482 30228544 -91615312 + AT_rich Low_complexity Low_complexity 1 62 0 3 815 7420 61 12 12 chr11 30228620 30229633 -91614223 - L1_Mus1 LINE L1 0 6567 5587 3 815 667 212 52 17 chr11 30229700 30229873 -91613983 - Lx7 LINE L1 -170 7290 7112 3 815 231 278 13 40 chr11 30229873 30229948 -91613908 + RMER15 LTR ERVL 291 363 -212 3 815 1024 177 20 0 chr11 30229948 30230146 -91613710 - Lx7 LINE L1 -425 7035 6834 3 815 361 258 196 68 chr11 30230146 30230483 -91613373 - RMER10A LTR ERVL -14 428 49 3 815 746 188 14 0 chr11 30230515 30230653 -91613203 - B1_Mur3 SINE Alu -1 148 9 3 815 357 311 72 67 chr11 30230516 30230709 -91613147 - B4 SINE B4 -69 223 30 3 815 1894 169 85 110 chr11 30230710 30231229 -91612627 - Lx7 LINE L1 -625 6835 6330 3 815 20092 168 72 31 chr11 30231579 30232581 -91611275 - Lx7 LINE L1 -1380 6316 5319 3 815 6029 128 37 8 chr11 30232581 30233322 -91610534 + Lx2 LINE L1 5971 6735 -262 3 815 3016 88 2 0 chr11 30233322 30233721 -91610135 + MTB LTR MaLR 1 400 0 3 815 6029 128 37 8 chr11 30233721 30233976 -91609880 + Lx2 LINE L1 6736 6996 -1 3 815 20092 137 105 32 chr11 30233976 30236869 -91606987 - Lx7 LINE L1 -562 5318 2097 3 815 240 35 0 0 chr11 30236877 30236906 -91606950 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 3 815 771 216 0 20 chr11 30236906 30237048 -91606808 - B1_Mur4 SINE Alu -9 141 1 3 815 20092 137 105 32 chr11 30237048 30237076 -91606780 - Lx7 LINE L1 -3784 2096 2070 3 815 240 35 0 0 chr11 30237076 30237105 -91606751 + (TGG)n Simple_repeat Simple_repeat 1 29 0 3 815 20092 140 100 29 chr11 30237105 30238069 -91605787 - Lx7 LINE L1 -3811 2069 1095 3 815 2494 209 57 34 chr11 30238075 30238192 -91605664 - RMER1C Other Other -8 1334 1207 3 815 227 29 0 54 chr11 30238192 30238229 -91605627 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 815 2494 209 57 34 chr11 30238229 30238482 -91605374 - RMER1C Other Other -136 1206 951 3 815 4921 118 30 14 chr11 30238482 30239253 -91604603 - Lx LINE L1 0 6654 5872 3 815 1968 106 26 70 chr11 30239263 30239648 -91604208 - RLTR9A LTR ERVK 0 368 1 3 815 2494 209 57 34 chr11 30239648 30239918 -91603938 - RMER1C Other Other -399 943 667 3 815 3388 177 57 21 chr11 30239937 30240732 -91603124 - Lx7 LINE L1 -6624 1104 282 3 815 296 295 72 32 chr11 30241196 30241333 -91602523 - MLT1J LTR MaLR -228 216 71 3 815 253 287 176 0 chr11 30241527 30241635 -91602221 - B1F2 SINE Alu -20 129 3 3 815 21 0 0 0 chr11 30241670 30241691 -91602165 + AT_rich Low_complexity Low_complexity 1 21 0 3 815 1351 135 9 18 chr11 30242475 30242694 -91601162 + URR1A DNA MER1_type 1 217 -9 3 815 327 268 0 0 chr11 30243275 30243346 -91600510 - ID4_ SINE ID -11 72 2 3 815 197 391 11 33 chr11 30243494 30243584 -91600272 + L2b LINE L2 3238 3325 -50 3 815 4385 125 32 1 chr11 30243809 30244467 -91599389 + RLTR33 LTR ERVK 1 678 0 3 815 189 342 41 0 chr11 30245916 30245989 -91597867 + MIRc SINE MIR 32 107 -161 3 815 3121 6 0 0 chr11 30246728 30247077 -91596779 - L1Md_A LINE L1 0 6582 6234 3 815 7181 74 6 0 chr11 30248077 30249417 -91594439 + L1_Mus1 LINE L1 5218 6565 -2 3 815 25 75 0 0 chr11 30249448 30249501 -91594355 + AT_rich Low_complexity Low_complexity 1 53 0 3 815 547 366 72 35 chr11 30251540 30251885 -91591971 - MLT2F LTR ERVL -121 542 185 3 815 226 146 0 68 chr11 30252530 30252574 -91591282 - B1F1 SINE Alu -101 48 8 3 815 21 57 0 0 chr11 30253145 30253180 -91590676 + AT_rich Low_complexity Low_complexity 1 35 0 3 815 235 238 0 0 chr11 30256620 30256662 -91587194 + Lx6 LINE L1 6826 6867 -593 3 815 4060 70 2 2 chr11 30256665 30257209 -91586647 + L1_Mur1 LINE L1 5297 5840 -46 3 815 328 351 22 22 chr11 30257318 30257332 -91586524 + ID_B1 SINE B4 80 216 -8 3 815 397 301 49 0 chr11 30257332 30257455 -91586401 + B1F SINE Alu 13 141 -8 3 815 22 0 0 0 chr11 30258870 30258892 -91584964 + AT_rich Low_complexity Low_complexity 1 22 0 3 815 1568 163 64 45 chr11 30259881 30260195 -91583661 + ORR1A4 LTR MaLR 2 321 -8 3 815 6749 156 31 35 chr11 30260197 30260333 -91583523 + Lx7 LINE L1 4489 4624 -1256 3 815 456 19 0 0 chr11 30260333 30260386 -91583470 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 815 6749 156 31 35 chr11 30260386 30261594 -91582262 + Lx7 LINE L1 4625 5828 -52 3 815 6667 46 1 6 chr11 30261594 30262427 -91581429 + L1Md_F2 LINE L1 5751 6579 -3 3 815 6749 188 44 31 chr11 30262427 30263332 -91580524 + Lx7 LINE L1 5829 6756 -940 3 815 649 165 74 0 chr11 30263333 30263454 -91580402 - URR1B DNA MER1_type -7 218 89 3 815 3581 170 106 30 chr11 30263505 30264092 -91579764 + Lx7 LINE L1 6750 7392 -304 3 815 348 24 0 0 chr11 30264092 30264133 -91579723 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 815 3581 170 106 30 chr11 30264133 30264410 -91579446 + Lx7 LINE L1 7393 7680 -16 3 815 302 302 9 19 chr11 30264813 30264921 -91578935 - PB1D10 SINE Alu -8 109 3 3 815 534 48 12 0 chr11 30264962 30265045 -91578811 - L1Md_F3 LINE L1 0 6584 6501 3 815 679 163 99 15 chr11 30265590 30265721 -91578135 - B1_Mur4 SINE Alu 0 150 9 3 815 380 277 79 65 chr11 30265598 30265737 -91578119 - B4 SINE B4 -72 220 80 3 815 251 283 7 178 chr11 30266065 30266211 -91577645 - MER20 DNA MER1_type -97 122 2 3 815 292 298 10 21 chr11 30266242 30266338 -91577518 + BC1_Mm scRNA scRNA 7 101 -51 3 815 581 298 28 0 chr11 30266635 30266776 -91577080 + RSINE1 SINE B4 11 155 -10 3 815 25 0 0 0 chr11 30266797 30266822 -91577034 + AT_rich Low_complexity Low_complexity 1 25 0 3 815 633 236 0 31 chr11 30266822 30266949 -91576907 + RSINE1 SINE B4 3 125 -40 3 815 249 33 0 0 chr11 30266965 30266995 -91576861 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 815 615 123 0 0 chr11 30266995 30267117 -91576739 + (GA)n Simple_repeat Simple_repeat 1 122 0 3 815 539 300 106 26 chr11 30268651 30269088 -91574768 - MLT1F1 LTR MaLR -53 507 1 3 815 228 357 63 8 chr11 30269089 30269216 -91574640 - MLT1J2 LTR MaLR -287 161 28 3 815 476 238 13 48 chr11 30269403 30269556 -91574300 - MTE2b LTR MaLR -6 373 167 3 815 2810 169 42 23 chr11 30269566 30270094 -91573762 - Lx4B LINE L1 0 7058 6521 3 815 2199 180 94 4 chr11 30270095 30270586 -91573270 + Lx4B LINE L1 6009 6543 -515 3 815 671 275 40 0 chr11 30270586 30270735 -91573121 - MTE2b LTR MaLR -224 155 1 3 815 232 271 168 29 chr11 30271111 30271248 -91572608 + MIRb SINE MIR 105 260 -8 3 815 211 308 163 39 chr11 30271391 30271624 -91572232 + MIRb SINE MIR 1 262 -6 3 815 457 302 32 145 chr11 30272569 30272817 -91571039 - MTD LTR MaLR -158 261 42 3 815 582 223 112 44 chr11 30272866 30273072 -91570784 + MER63D DNA AcHobo 1 220 -841 3 815 742 119 124 249 chr11 30273078 30273547 -91570309 + RMER17C LTR ERVK 1 410 0 3 815 1333 230 26 97 chr11 30273547 30274081 -91569775 + RMER17C-int LTR ERVK 1 496 -2742 3 815 3225 106 40 34 chr11 30274264 30274764 -91569092 + RLTR1C LTR ERV1 1 503 0 3 815 275 296 43 71 chr11 30274766 30274977 -91568879 + RMER17C-int LTR ERVK 989 1193 -2045 3 815 4657 137 33 23 chr11 30274995 30275101 -91568755 + RMER17C-int LTR ERVK 1163 1265 -1973 3 815 3429 138 33 24 chr11 30275101 30275682 -91568174 + Lx LINE L1 6068 6653 -1 3 815 4657 137 33 23 chr11 30275682 30276428 -91567428 + RMER17C-int LTR ERVK 1266 2023 -1215 3 815 3774 163 35 19 chr11 30276433 30277114 -91566742 + RLTR17 LTR ERVK 1 692 0 4 815 1063 222 90 115 chr11 30277115 30277603 -91566253 + RMER3D-int LTR ERVK 2 477 -2365 4 816 4740 170 92 52 chr11 30277677 30278943 -91564913 + RMER3D-int LTR ERVK 1015 2330 -512 4 816 2958 176 74 30 chr11 30278960 30279723 -91564133 + RLTR13D3 LTR ERVK 1 1114 0 4 816 1514 181 56 87 chr11 30279728 30280232 -91563624 + RMER3D-int LTR ERVK 2350 2837 -5 4 816 681 123 24 32 chr11 30280237 30280363 -91563493 + RLTR17 LTR ERVK 1 125 -567 4 816 4354 118 66 25 chr11 30280402 30281389 -91562467 + RMER17C-int LTR ERVK 2204 3141 -97 4 816 1474 205 37 22 chr11 30281468 30281872 -91561984 + RMER17C LTR ERVK 1 410 0 4 816 265 319 55 55 chr11 30281872 30282008 -91561848 + MER63D DNA AcHobo 252 388 -673 3 816 848 136 23 12 chr11 30282015 30282186 -91561670 + T-rich Low_complexity Low_complexity 3 175 0 4 816 1256 84 6 0 chr11 30282187 30282366 -91561490 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 816 1210 75 0 0 chr11 30282374 30282521 -91561335 - B1_Mus1 SINE Alu 0 148 2 4 816 765 214 0 21 chr11 30282562 30282705 -91561151 + B1_Mus1 SINE Alu 7 146 -2 4 816 220 132 23 35 chr11 30282712 30282798 -91561058 + A-rich Low_complexity Low_complexity 4 88 0 4 816 456 19 0 0 chr11 30282886 30282939 -91560917 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 816 313 320 23 39 chr11 30283580 30283710 -91560146 - B1F SINE Alu 0 149 22 4 816 255 61 0 0 chr11 30283776 30283809 -91560047 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 816 213 282 0 18 chr11 30283886 30284052 -91559804 + (CA)n Simple_repeat Simple_repeat 2 164 0 4 816 304 278 278 0 chr11 30284054 30284248 -91559608 - Lx LINE L1 -171 7473 7226 4 816 6270 100 79 6 chr11 30284265 30284523 -91559333 - L1_Mus3 LINE L1 -7 6631 6376 4 816 243 0 0 0 chr11 30284523 30284550 -91559306 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 816 26846 118 42 4 chr11 30284550 30286108 -91557748 - L1_Mus3 LINE L1 -263 6375 4736 4 816 305 24 24 0 chr11 30286108 30286150 -91557706 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 816 26846 132 25 9 chr11 30286150 30290384 -91553472 - L1_Mus3 LINE L1 -1148 4735 432 4 816 1283 95 10 10 chr11 30290398 30290590 -91553266 - B2_Mm1t SINE B2 0 193 2 4 816 291 298 56 37 chr11 30290977 30291085 -91552771 - B1F1 SINE Alu -2 147 38 4 816 396 312 102 41 chr11 30291165 30291362 -91552494 - B4 SINE B4 -83 209 1 4 816 879 250 52 19 chr11 30291401 30291770 -91552086 - L1_Mur3 LINE L1 -1767 4376 3995 4 816 6228 130 52 34 chr11 30291774 30293069 -91550787 - Lx LINE L1 -6 6991 5669 4 816 606 28 0 0 chr11 30293189 30293261 -91550595 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 816 1296 328 52 21 chr11 30293595 30294303 -91549553 - RodERV21-int LTR ERV1 -202 4789 4060 4 816 226 233 0 0 chr11 30294846 30294889 -91548967 + GA-rich Low_complexity Low_complexity 2 44 0 4 816 6828 90 7 0 chr11 30294913 30296222 -91547634 - L1_Mus1 LINE L1 0 6567 5252 4 816 6482 52 11 0 chr11 30296220 30297061 -91546795 - L1Md_F2 LINE L1 -2 6580 5731 4 816 26221 98 9 7 chr11 30297060 30300160 -91543696 - L1_Mus1 LINE L1 -616 5267 2161 4 816 1241 26 7 0 chr11 30300160 30300313 -91543543 + (TTC)n Simple_repeat Simple_repeat 2 155 0 4 816 1118 73 0 0 chr11 30300314 30300451 -91543405 - B1_Mm SINE Alu -10 137 1 4 816 26221 77 24 4 chr11 30300451 30302169 -91541687 - L1_Mus1 LINE L1 -3723 2160 406 4 816 387 0 0 0 chr11 30302519 30302562 -91541294 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 4 816 2684 281 60 48 chr11 30302917 30303411 -91540445 + Lx8 LINE L1 6334 6848 -625 4 816 282 56 0 0 chr11 30303411 30303447 -91540409 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 4 816 2684 281 60 48 chr11 30303447 30303933 -91539923 + Lx8 LINE L1 6849 7325 -148 4 816 370 345 229 24 chr11 30304088 30304385 -91539471 - MLT1G LTR MaLR -233 358 1 4 816 392 275 84 35 chr11 30304675 30304818 -91539038 - MIRc SINE MIR -38 230 81 4 816 4829 65 34 0 chr11 30306941 30307568 -91536288 + L1_Mus1 LINE L1 5916 6563 -4 4 816 1160 69 6 0 chr11 30307568 30307727 -91536129 + (GAA)n Simple_repeat Simple_repeat 2 161 0 4 816 281 287 0 0 chr11 30307923 30308010 -91535846 + Lx9 LINE L1 6863 6949 -695 4 816 33944 72 2 14 chr11 30308029 30314369 -91529487 - L1Md_F2 LINE L1 -12 6570 307 4 816 699 285 23 47 chr11 30314368 30314665 -91529191 + Lx9 LINE L1 6790 7169 -475 4 816 270 0 0 0 chr11 30314665 30314695 -91529161 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 816 1177 41 0 0 chr11 30314695 30314842 -91529014 + L1_Mus1 LINE L1 6407 6553 -14 4 816 459 365 79 22 chr11 30314842 30315188 -91528668 + Lx9 LINE L1 7090 7470 -3 4 816 468 0 0 0 chr11 30315537 30315589 -91528267 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 816 14583 99 56 10 chr11 30315694 30318836 -91525020 + L1_Mur1 LINE L1 3 3322 -2564 4 816 1046 71 21 14 chr11 30318836 30318967 -91524889 + B1_Mm SINE Alu 4 134 -13 4 816 252 0 0 0 chr11 30318967 30318995 -91524861 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 816 1046 71 21 14 chr11 30318995 30319006 -91524850 + B1_Mm SINE Alu 135 147 0 4 816 14583 77 14 13 chr11 30319006 30319123 -91524733 + L1_Mur1 LINE L1 3323 3427 -2459 4 816 13224 114 21 47 chr11 30319116 30322040 -91521816 - L1VL4 LINE L1 -512 3047 204 4 816 1081 53 8 0 chr11 30322089 30322222 -91521634 + B1_Mus1 SINE Alu 3 136 -12 4 816 253 0 54 0 chr11 30322222 30322259 -91521597 + (CAA)n Simple_repeat Simple_repeat 1 39 0 4 816 4436 63 2 0 chr11 30322300 30322859 -91520997 - L1Md_F2 LINE L1 -11 6571 6012 4 816 48 43 0 0 chr11 30323048 30323117 -91520739 + AT_rich Low_complexity Low_complexity 1 69 0 4 816 1283 97 22 0 chr11 30323259 30323444 -91520412 + B2_Mm2 SINE B2 1 189 -6 4 816 561 174 191 0 chr11 30323620 30323735 -91520121 - B1_Mm SINE Alu -8 139 3 4 816 489 307 69 15 chr11 30323821 30324023 -91519833 + MIR SINE MIR 4 216 -46 4 816 1510 158 98 47 chr11 30324371 30324709 -91519147 + ORR1C2 LTR MaLR 1 355 -29 4 816 31 26 0 0 chr11 30325489 30325527 -91518329 + AT_rich Low_complexity Low_complexity 1 38 0 4 816 221 346 55 27 chr11 30325603 30325713 -91518143 - MIR SINE MIR -140 122 10 4 816 180 270 15 31 chr11 30326448 30326513 -91517343 + L2 LINE L2 2735 2798 -621 4 816 458 241 75 62 chr11 30327275 30327421 -91516435 + B1_Mur1 SINE Alu 2 149 0 4 816 867 218 107 20 chr11 30327558 30327755 -91516101 - B3 SINE B2 -2 214 1 4 816 189 107 0 0 chr11 30328334 30328362 -91515494 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 816 568 239 7 82 chr11 30328395 30328541 -91515315 + B1_Mur1 SINE Alu 2 136 -13 4 816 5029 65 55 1 chr11 30328541 30329254 -91514602 + L1Md_F2 LINE L1 4836 5586 -297 4 816 7813 62 3 11 chr11 30329254 30330258 -91513598 + L1Md_F2 LINE L1 5587 6582 0 4 816 339 329 26 46 chr11 30330715 30330879 -91512977 + MIRb SINE MIR 4 157 -111 4 816 922 278 61 122 chr11 30330883 30331277 -91512579 - MTE2a LTR MaLR -1 378 9 4 816 622 183 145 38 chr11 30331526 30331657 -91512199 - B1_Mur2 SINE Alu -4 145 1 4 816 507 308 7 0 chr11 30331787 30331930 -91511926 + RSINE1 SINE B4 3 146 -19 4 816 252 185 0 0 chr11 30331935 30331989 -91511867 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4 816 299 242 16 0 chr11 30332230 30332292 -91511564 + ID SINE ID 2 64 -160 4 816 1345 187 32 18 chr11 30332302 30332580 -91511276 + ORR1C2 LTR MaLR 103 384 0 4 816 377 327 43 67 chr11 30332831 30333041 -91510815 + HAL1 LINE L1 1490 1694 -813 4 816 561 68 0 0 chr11 30333089 30333163 -91510693 + (TCTG)n Simple_repeat Simple_repeat 3 76 0 4 816 459 301 46 64 chr11 30333247 30333477 -91510379 + MLT1H LTR MaLR 84 346 -245 4 816 232 309 42 11 chr11 30333494 30333589 -91510267 + MLT1H LTR MaLR 464 561 -18 4 816 961 201 65 5 chr11 30333650 30333850 -91510006 - MTD LTR MaLR 0 419 208 4 816 23109 64 2 0 chr11 30333857 30337792 -91506064 - L1Md_F2 LINE L1 0 6582 2711 4 816 711 229 6 37 chr11 30337796 30337959 -91505897 - MTD LTR MaLR -255 164 7 4 816 714 250 67 17 chr11 30338250 30338429 -91505427 + B3A SINE B2 3 190 -8 4 816 756 259 25 45 chr11 30338454 30338652 -91505204 + B3A SINE B2 4 197 -1 4 816 22 35 0 0 chr11 30339008 30339037 -91504819 + AT_rich Low_complexity Low_complexity 1 29 0 4 816 572 223 6 0 chr11 30339037 30339212 -91504644 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 816 717 246 16 53 chr11 30339212 30339401 -91504455 - B3A SINE B2 -16 182 1 4 816 983 212 65 41 chr11 30339402 30339699 -91504157 + ORR1D1 LTR MaLR 1 374 0 4 816 423 0 0 0 chr11 30339714 30339761 -91504095 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 4 816 36 0 0 0 chr11 30340261 30340297 -91503559 + AT_rich Low_complexity Low_complexity 1 36 0 4 816 189 0 0 0 chr11 30340396 30340417 -91503439 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 4 816 702 64 11 0 chr11 30340417 30340511 -91503345 - B1_Mus2 SINE Alu 0 147 53 4 816 225 250 75 45 chr11 30340460 30340527 -91503329 - RLTR25A LTR ERVK -521 582 514 4 816 365 115 0 19 chr11 30340701 30340754 -91503102 + HAL1-3A_ME LINE L1 1977 2028 -830 4 816 215 0 0 62 chr11 30340755 30340787 -91503069 + (CAGAGA)n Simple_repeat Simple_repeat 5 34 0 4 816 675 87 0 0 chr11 30341158 30341262 -91502594 + (TC)n Simple_repeat Simple_repeat 2 105 0 4 816 220 250 20 40 chr11 30341418 30341468 -91502388 + MIR SINE MIR 23 71 -191 4 816 721 264 61 23 chr11 30341560 30341911 -91501945 + Lx7 LINE L1 5527 5892 -1804 4 816 785 284 113 24 chr11 30342422 30342793 -91501063 + MER34 LTR ERV1 127 530 -12 4 816 728 175 351 29 chr11 30342862 30343033 -91500823 - URR1A DNA MER1_type 0 226 1 4 816 770 234 25 37 chr11 30343382 30343582 -91500274 - B3A SINE B2 -9 186 4 4 816 213 196 0 0 chr11 30343598 30343649 -91500207 + CT-rich Low_complexity Low_complexity 3 53 0 4 816 698 216 14 41 chr11 30343675 30343820 -91500036 - B1_Mur1 SINE Alu -8 141 1 4 816 7034 56 18 1 chr11 30344012 30344890 -91498966 + RLTR13B1 LTR ERVK 1 893 0 4 816 630 267 66 22 chr11 30345596 30345786 -91498070 - MTE2a LTR MaLR -2 377 154 4 816 563 336 44 70 chr11 30346521 30346819 -91497037 - B4A SINE B4 -1 291 2 4 816 700 198 287 22 chr11 30346819 30347075 -91496781 + ORR1D2 LTR MaLR 37 365 -5 4 816 480 283 24 32 chr11 30347084 30347208 -91496648 + RSINE1 SINE B4 43 165 0 4 816 223 304 42 42 chr11 30347089 30347233 -91496623 + B2_Mm2 SINE B2 46 189 -6 4 816 210 237 0 0 chr11 30347901 30347939 -91495917 + L3 LINE CR1 3158 3195 -1294 5 816 373 280 0 70 chr11 30349536 30349651 -91494205 + PB1D9 SINE Alu 5 111 -9 5 816 706 161 6 12 chr11 30349651 30349821 -91494035 + (CCA)n Simple_repeat Simple_repeat 3 171 0 5 816 2834 160 23 14 chr11 30350418 30350937 -91492919 + RLTR28 LTR ERVL 1 524 0 5 816 413 271 36 39 chr11 30351101 30351224 -91492632 + PB1D10 SINE Alu 1 121 -26 5 816 276 30 0 0 chr11 30351224 30351257 -91492599 + (CCAA)n Simple_repeat Simple_repeat 3 35 0 5 816 311 316 21 42 chr11 30351257 30351275 -91492581 + B1_Mus2 SINE Alu 122 139 -8 5 816 401 279 38 19 chr11 30352283 30352389 -91491467 + RSINE1 SINE B4 3 110 -55 5 816 441 0 0 0 chr11 30352389 30352438 -91491418 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 816 417 20 0 0 chr11 30352438 30352487 -91491369 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 816 286 336 8 72 chr11 30352576 30352701 -91491155 + L2a LINE L2 3277 3393 -33 5 816 2182 167 86 151 chr11 30352713 30353328 -91490528 + RMER15 LTR ERVL 1 575 0 5 816 238 289 158 40 chr11 30353332 30353433 -91490423 - MIRm SINE MIR -110 166 54 5 816 366 330 53 57 chr11 30353488 30353732 -91490124 + L1ME1 LINE L1 5896 6138 -41 5 816 394 286 84 84 chr11 30353736 30353950 -91489906 + MLT1D LTR MaLR 5 218 -287 5 816 248 313 29 39 chr11 30353965 30354068 -91489788 + MLT1D LTR MaLR 404 505 0 5 816 21 36 0 0 chr11 30354213 30354241 -91489615 + AT_rich Low_complexity Low_complexity 1 28 0 5 816 713 281 91 54 chr11 30355209 30355450 -91488406 + B4A SINE B4 2 251 -41 5 816 494 0 0 32 chr11 30355479 30355542 -91488314 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 5 816 4589 102 24 8 chr11 30355621 30356291 -91487565 - Lx3A LINE L1 0 6981 6301 5 816 2564 94 23 2 chr11 30356291 30356684 -91487172 + Lx3_Mus LINE L1 5933 6333 -676 5 816 316 284 241 0 chr11 30356857 30356973 -91486883 + B1F2 SINE Alu 6 149 0 5 816 269 336 34 34 chr11 30357450 30357715 -91486141 + L1_Mur3 LINE L1 899 1163 -6565 5 816 378 225 20 74 chr11 30357906 30357961 -91485895 + L1_Mur3 LINE L1 1453 1505 -4375 5 816 1343 123 61 0 chr11 30357961 30358173 -91485683 - URR1B DNA MER1_type 0 225 1 5 816 378 225 20 74 chr11 30358173 30358266 -91485590 + L1_Mur3 LINE L1 1506 1593 -4287 5 816 2543 221 20 7 chr11 30358255 30358861 -91484995 + Lx2B LINE L1 6070 6683 -317 5 816 447 234 85 42 chr11 30358878 30359043 -91484813 + Lx4B LINE L1 6887 7058 0 5 816 473 270 60 60 chr11 30359059 30359343 -91484513 + L1_Mur3 LINE L1 3320 3603 -2277 5 816 231 284 0 0 chr11 30359367 30359441 -91484415 + A-rich Low_complexity Low_complexity 1 74 0 5 816 626 177 10 0 chr11 30359442 30359538 -91484318 - URR1B DNA MER1_type -128 97 1 5 816 682 176 22 66 chr11 30359545 30359727 -91484129 + L1_Mur3 LINE L1 3651 3824 -2056 5 816 406 301 98 0 chr11 30359729 30359862 -91483994 + B1_Mur1 SINE Alu 1 146 -3 5 816 27798 121 12 42 chr11 30359919 30365366 -91478490 + L1Md_F2 LINE L1 217 5586 -297 5 816 8007 53 1 2 chr11 30365366 30366363 -91477493 + L1Md_F2 LINE L1 5587 6582 0 5 816 680 285 62 22 chr11 30366363 30366718 -91477138 + Lx8 LINE L1 5318 5686 -194 5 816 642 180 207 0 chr11 30366764 30366914 -91476942 - MTD LTR MaLR -5 414 234 5 816 301 129 10 24 chr11 30366909 30366967 -91476889 - MTC-int LTR MaLR -1518 62 4 5 816 2059 176 73 10 chr11 30366967 30367363 -91476493 - MTC LTR MaLR 0 421 1 5 816 226 278 131 20 chr11 30367367 30367466 -91476390 + MT-int LTR MaLR 989 1098 0 5 816 683 293 70 33 chr11 30367477 30367692 -91476164 - MTD LTR MaLR -196 223 1 5 816 2178 302 64 82 chr11 30367692 30368129 -91475727 + Lx8 LINE L1 6149 6551 -922 5 816 1150 62 0 14 chr11 30368129 30368276 -91475580 - B1_Mus1 SINE Alu -2 146 2 5 816 2178 302 64 82 chr11 30368276 30368359 -91475497 + Lx8 LINE L1 6552 6618 -855 5 816 865 254 130 38 chr11 30368359 30368698 -91475158 + ORR1D1 LTR MaLR 1 370 -4 5 816 2178 302 64 82 chr11 30368698 30369496 -91474360 + Lx8 LINE L1 6619 7443 -30 5 816 597 336 121 12 chr11 30370773 30371119 -91472737 - L2a LINE L2 -23 3403 3020 5 816 321 348 53 24 chr11 30371337 30371546 -91472310 - L2a LINE L2 -649 2770 2556 5 816 239 331 89 25 chr11 30372916 30373040 -91470816 + MIRb SINE MIR 31 166 -102 5 816 2305 166 15 12 chr11 30373040 30373444 -91470412 + MTB_Mm LTR MaLR 1 405 -2 5 816 239 331 89 25 chr11 30373444 30373477 -91470379 + MIRb SINE MIR 167 198 -70 5 816 1366 85 0 16 chr11 30373567 30373758 -91470098 + B2_Mm2 SINE B2 1 188 -7 5 816 501 141 0 0 chr11 30373852 30373937 -91469919 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 816 822 286 33 51 chr11 30374091 30374364 -91469492 - B4A SINE B4 -24 268 1 5 816 867 106 0 0 chr11 30375433 30375575 -91468281 + (TTCC)n Simple_repeat Simple_repeat 1 142 0 5 816 354 45 0 0 chr11 30375577 30375621 -91468235 + (TCCCC)n Simple_repeat Simple_repeat 2 45 0 5 816 770 174 14 7 chr11 30375629 30375768 -91468088 - B1_Mus1 SINE Alu -7 141 2 5 816 15460 58 4 6 chr11 30376828 30379595 -91464261 - L1Md_F2 LINE L1 -12 6570 3809 5 816 222 37 0 0 chr11 30379637 30379664 -91464192 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 816 4301 90 7 3 chr11 30379830 30380412 -91463444 + MT2B2 LTR ERVL 1 584 0 5 816 408 264 121 23 chr11 30380862 30380994 -91462862 + B1F SINE Alu 3 147 -2 5 816 22 0 0 0 chr11 30381314 30381336 -91462520 + AT_rich Low_complexity Low_complexity 1 22 0 5 816 929 122 0 21 chr11 30382462 30382604 -91461252 + B1_Mus2 SINE Alu 1 139 -8 5 816 189 107 0 0 chr11 30382627 30382655 -91461201 + (GAA)n Simple_repeat Simple_repeat 2 29 0 5 816 1506 28 34 0 chr11 30382656 30382833 -91461023 + B2_Mm1t SINE B2 1 183 -10 5 816 263 267 93 74 chr11 30383135 30383297 -91460559 - RMER15 LTR ERVL -9 566 402 5 816 362 299 10 10 chr11 30385023 30385121 -91458735 - ID_B1 SINE B4 -86 138 41 5 816 358 267 22 11 chr11 30385646 30385737 -91458119 - LTR53 LTR ERVL -23 496 405 5 816 991 293 87 25 chr11 30385752 30386074 -91457782 - LTR53 LTR ERVL -177 342 1 5 816 473 319 92 7 chr11 30387060 30387185 -91456671 + RSINE1 SINE B4 3 139 -26 5 816 267 31 0 0 chr11 30387185 30387217 -91456639 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 816 473 319 92 7 chr11 30387217 30387233 -91456623 + RSINE1 SINE B4 140 155 -10 5 816 2040 207 33 4 chr11 30387544 30388001 -91455855 + L1_Mur2 LINE L1 563 1032 -6054 5 816 2680 101 36 66 chr11 30388002 30388499 -91455357 - RLTR45 LTR ERVK 0 482 1 5 816 279 0 0 0 chr11 30388523 30388554 -91455302 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 816 698 138 8 0 chr11 30388555 30388685 -91455171 + L1_Mur2 LINE L1 1047 1177 -5909 5 816 409 154 51 0 chr11 30388679 30388757 -91455099 + L1_Mur2 LINE L1 1790 1871 -4006 5 816 2082 76 10 3 chr11 30388750 30389039 -91454817 - L1_Mus3 LINE L1 -338 6300 6010 5 816 1427 125 254 0 chr11 30389044 30389332 -91454524 + L1_Mur2 LINE L1 2437 2797 -3080 5 816 2561 55 65 0 chr11 30389472 30389797 -91454059 - ORR1A1 LTR MaLR 0 346 1 5 816 698 202 84 24 chr11 30389998 30390211 -91453645 - RodERV21-int LTR ERV1 -2275 2716 2491 5 816 3853 218 49 25 chr11 30390255 30391111 -91452745 - RodERV21-int LTR ERV1 -2607 2384 1508 5 816 302 264 47 41 chr11 30391111 30391281 -91452575 - RodERV21-int LTR ERV1 -3738 1253 1083 5 816 5532 112 25 33 chr11 30391668 30392577 -91451279 + RLTR13D6 LTR ERVK 1 902 0 5 816 198 0 0 0 chr11 30392682 30392704 -91451152 + (T)n Simple_repeat Simple_repeat 1 22 0 5 816 1122 89 0 0 chr11 30392704 30392850 -91451006 - B1_Mus2 SINE Alu 0 147 2 5 816 22 35 0 0 chr11 30393384 30393413 -91450443 + AT_rich Low_complexity Low_complexity 1 29 0 5 816 30 45 0 0 chr11 30393602 30393646 -91450210 + AT_rich Low_complexity Low_complexity 1 44 0 5 816 2427 169 52 142 chr11 30393902 30394573 -91449283 - RMER19C LTR ERVK 0 611 1 5 816 183 129 0 0 chr11 30394650 30394681 -91449175 + (T)n Simple_repeat Simple_repeat 1 31 0 5 816 1244 47 0 0 chr11 30394681 30394829 -91449027 - B1_Mus1 SINE Alu 0 148 1 5 816 189 254 134 0 chr11 30395077 30395144 -91448712 - MIR SINE MIR -112 96 21 5 816 306 186 69 40 chr11 30395301 30395402 -91448454 + Lx9 LINE L1 7517 7620 -24 5 816 386 291 45 9 chr11 30395750 30395861 -91447995 - B3 SINE B2 -100 116 2 5 816 611 278 93 90 chr11 30396109 30396476 -91447380 + RLTR9A LTR ERVK 1 368 0 5 816 5906 161 70 41 chr11 30396892 30397343 -91446513 + RMER16-int LTR ERVK 255 759 -4647 5 816 1711 179 142 85 chr11 30397343 30397765 -91446091 + RLTR41 LTR ERV1 1 446 0 5 816 5906 161 70 41 chr11 30397765 30398590 -91445266 + RMER16-int LTR ERVK 760 1569 -3837 5 816 619 311 8 37 chr11 30398711 30399136 -91444720 + RLTR45-int LTR ERVK 3231 3459 -3785 5 816 425 264 116 37 chr11 30399140 30399329 -91444527 + RMER16 LTR ERVK 111 314 -219 5 816 833 298 81 33 chr11 30399330 30399788 -91444068 + SRV_MM-int LTR ERVK 1798 2277 -3890 5 816 4925 126 83 2 chr11 30399927 30400785 -91443071 + RMER16-int LTR ERVK 1566 2492 -2914 5 816 2232 138 62 14 chr11 30400786 30401230 -91442626 - RLTR1 LTR ERV1 0 624 135 5 816 4517 113 55 8 chr11 30401326 30402095 -91441761 + RMER16-int LTR ERVK 2488 3292 -2114 5 816 989 108 74 26 chr11 30402079 30402269 -91441587 + RMER16-int LTR ERVK 3502 3700 -1706 5 816 854 305 10 15 chr11 30402334 30402724 -91441132 + RLTR6-int LTR ERV1 7277 7664 -114 5 816 1199 48 0 7 chr11 30403055 30403203 -91440653 - B1_Mus1 SINE Alu 0 148 2 5 816 1688 277 70 11 chr11 30403405 30404163 -91439693 - Lx6 LINE L1 -20 7440 6455 5 816 503 248 0 0 chr11 30404161 30404266 -91439590 + Lx5 LINE L1 6258 6362 -688 5 816 27 0 0 0 chr11 30404623 30404650 -91439206 + AT_rich Low_complexity Low_complexity 1 27 0 5 816 3427 148 90 31 chr11 30404655 30405308 -91438548 + RLTR17 LTR ERVK 1 692 0 5 816 1116 95 7 0 chr11 30405768 30405915 -91437941 - B1_Mus1 SINE Alu 0 148 1 5 816 214 146 42 0 chr11 30406022 30406070 -91437786 + (TATAA)n Simple_repeat Simple_repeat 4 53 0 5 816 21 57 0 0 chr11 30406122 30406157 -91437699 + AT_rich Low_complexity Low_complexity 1 35 0 5 816 198 0 0 0 chr11 30406883 30406905 -91436951 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 5 816 291 85 50 17 chr11 30406946 30407006 -91436850 + (TATG)n Simple_repeat Simple_repeat 3 64 0 5 816 318 240 59 10 chr11 30407258 30407359 -91436497 - Lx9 LINE L1 -484 7160 7055 5 816 378 0 0 0 chr11 30407602 30407644 -91436212 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 816 459 35 0 0 chr11 30408113 30408170 -91435686 + (TTA)n Simple_repeat Simple_repeat 3 59 0 5 816 309 186 0 0 chr11 30408189 30408259 -91435597 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 817 10330 108 55 12 chr11 30409231 30410959 -91432897 - L1_Mm LINE L1 -549 5334 3533 5 817 20946 26 0 0 chr11 30410986 30414259 -91429597 - L1Md_T LINE L1 0 6582 3310 5 817 763 66 0 139 chr11 30414299 30414396 -91429460 - L1_Mm LINE L1 -2335 3548 3463 5 817 1541 41 0 25 chr11 30414396 30414594 -91429262 - B2_Mm1a SINE B2 0 193 1 5 817 763 66 0 139 chr11 30414594 30414654 -91429202 - L1_Mm LINE L1 -2421 3462 3413 5 817 6461 61 52 2 chr11 30414636 30415535 -91428321 + L1_Mus2 LINE L1 5623 6566 0 5 817 482 0 17 0 chr11 30415632 30415690 -91428166 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 817 36 0 0 0 chr11 30416206 30416242 -91427614 + AT_rich Low_complexity Low_complexity 1 36 0 6 817 219 359 54 40 chr11 30416293 30416441 -91427415 + MIRb SINE MIR 108 257 -11 6 817 279 327 19 25 chr11 30417011 30417171 -91426685 - L2 LINE L2 -1398 2021 1863 6 817 1332 71 21 21 chr11 30419648 30419836 -91424020 + B2_Mm2 SINE B2 1 188 -7 6 817 266 332 150 27 chr11 30419839 30420069 -91423787 - L2c LINE L2 -21 3366 3082 6 817 1492 67 0 5 chr11 30420706 30420900 -91422956 - B2_Mm2 SINE B2 -2 193 1 6 817 531 273 46 15 chr11 30420968 30421098 -91422758 - ID_B1 SINE B4 0 224 91 6 817 222 171 0 0 chr11 30421534 30421575 -91422281 + T-rich Low_complexity Low_complexity 1 41 0 6 817 451 208 9 0 chr11 30422851 30422954 -91420902 - Tigger1 DNA MER2_type -2172 246 143 6 817 629 316 45 0 chr11 30422954 30423109 -91420747 + RSINE1 SINE B4 4 165 0 6 817 204 381 10 20 chr11 30423252 30423351 -91420505 + MIRb SINE MIR 144 241 -27 6 817 880 271 9 5 chr11 30423664 30423875 -91419981 + B3 SINE B2 1 212 -4 6 817 244 180 129 16 chr11 30424086 30424148 -91419708 + ID4_ SINE ID 3 71 -12 6 817 1166 64 0 0 chr11 30424227 30424367 -91419489 + B1_Mm SINE Alu 1 140 -7 6 817 252 0 0 0 chr11 30424369 30424397 -91419459 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 817 2791 138 28 17 chr11 30424534 30424932 -91418924 + L1_Mur1 LINE L1 4130 4539 -1347 6 817 2136 154 3 3 chr11 30424932 30425278 -91418578 - ORR1A1 LTR MaLR 0 346 1 6 817 2791 138 28 17 chr11 30425278 30425410 -91418446 + L1_Mur1 LINE L1 4540 4666 -1220 6 817 1086 95 0 0 chr11 30425431 30425578 -91418278 - B1_Mus1 SINE Alu 0 148 2 6 817 216 0 0 0 chr11 30425592 30425616 -91418240 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 817 8771 129 105 25 chr11 30425618 30427210 -91416646 - Lx LINE L1 -7 6647 4736 6 817 212 0 36 0 chr11 30427210 30427238 -91416618 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 817 8771 149 159 9 chr11 30427238 30428295 -91415561 - Lx LINE L1 -1148 4735 3674 6 817 462 154 9 19 chr11 30428973 30429031 -91414825 + polypurine Low_complexity Low_complexity 1 57 0 6 817 1347 72 0 0 chr11 30429031 30429211 -91414645 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 817 462 154 9 19 chr11 30429211 30429258 -91414598 + polypurine Low_complexity Low_complexity 58 104 0 6 817 234 278 92 42 chr11 30429833 30429953 -91413903 - LTR81B LTR ERV1? -193 1157 1032 6 817 241 280 174 25 chr11 30430363 30430484 -91413372 - LTR81B LTR ERV1? -868 525 387 6 817 411 341 43 0 chr11 30430505 30430643 -91413213 - RSINE1 SINE B4 -19 146 3 6 817 371 347 69 7 chr11 30430645 30430790 -91413066 - MER5A1 DNA MER1_type -4 162 9 6 817 236 196 28 19 chr11 30430967 30431027 -91412829 - MIRc SINE MIR -128 140 75 6 817 237 219 0 59 chr11 30431095 30431163 -91412693 + ID4_ SINE ID 19 82 -1 6 817 816 189 131 16 chr11 30431448 30431631 -91412225 + B3 SINE B2 1 204 -12 6 817 330 270 102 8 chr11 30433150 30433277 -91410579 + L2 LINE L2 706 844 -2575 6 817 455 361 92 18 chr11 30433517 30433898 -91409958 + L2 LINE L2 1396 1804 -1615 6 817 1058 269 87 9 chr11 30435258 30435577 -91408279 - MTEa LTR MaLR -48 331 1 6 817 25980 109 10 24 chr11 30435984 30437406 -91406450 - L1_Mus1 LINE L1 -748 5819 4438 6 817 1106 90 0 7 chr11 30437406 30437552 -91406304 - B1_Mm SINE Alu -2 145 1 6 817 25980 112 8 27 chr11 30437552 30440551 -91403305 - L1_Mus1 LINE L1 -1446 4437 1483 6 817 13034 166 20 62 chr11 30440551 30440968 -91402888 + Lx LINE L1 3039 3472 -2405 6 817 513 0 0 0 chr11 30440968 30441025 -91402831 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 817 13034 146 29 44 chr11 30441025 30444291 -91399565 + Lx LINE L1 3473 6649 -5 6 817 239 220 0 39 chr11 30444416 30444468 -91399388 + MER67A LTR ERV1 71 120 -423 6 817 353 313 91 41 chr11 30444663 30444883 -91398973 - MIR SINE MIR 0 262 32 6 817 22 0 0 0 chr11 30444930 30444952 -91398904 + AT_rich Low_complexity Low_complexity 1 22 0 6 817 1221 192 103 67 chr11 30444994 30445352 -91398504 - ORR1D1 LTR MaLR -3 371 1 6 817 261 0 0 0 chr11 30445495 30445524 -91398332 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 817 262 293 53 0 chr11 30445524 30445591 -91398265 - PB1D9 SINE Alu -14 106 36 6 817 1504 287 48 68 chr11 30445599 30446273 -91397583 + RMER19B LTR ERVK 35 900 -2 6 817 535 273 156 12 chr11 30446543 30446710 -91397146 + B3A SINE B2 2 192 -6 6 817 26 50 0 0 chr11 30446710 30446750 -91397106 + AT_rich Low_complexity Low_complexity 1 40 0 6 817 325 194 53 40 chr11 30447215 30447290 -91396566 - RSINE1 SINE B4 -58 107 32 6 817 1134 68 0 33 chr11 30447960 30448111 -91395745 - B1_Mm SINE Alu -1 146 1 6 817 465 90 0 0 chr11 30449517 30449584 -91394272 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 817 324 102 0 0 chr11 30449860 30449909 -91393947 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 817 244 324 112 118 chr11 30449982 30450143 -91393713 + RSINE1 SINE B4 3 162 -3 6 817 368 144 211 0 chr11 30450539 30450629 -91393227 - B3 SINE B2 0 216 108 6 817 467 181 97 79 chr11 30451171 30451285 -91392571 - B3 SINE B2 -97 119 4 6 817 441 0 0 0 chr11 30453843 30453892 -91389964 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 817 570 226 31 8 chr11 30455390 30455532 -91388324 - B3 SINE B2 -10 185 33 6 817 594 159 0 0 chr11 30455985 30456092 -91387764 + CT-rich Low_complexity Low_complexity 2 108 0 6 817 180 0 0 0 chr11 30456092 30456112 -91387744 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6 817 242 299 179 0 chr11 30456191 30456258 -91387598 - RSINE1 SINE B4 -85 80 2 6 817 23 33 0 0 chr11 30456563 30456593 -91387263 + AT_rich Low_complexity Low_complexity 1 30 0 6 817 904 96 66 0 chr11 30457141 30457277 -91386579 - B1_Mm SINE Alu -2 145 1 6 817 188 333 62 0 chr11 30457869 30457965 -91385891 + MIRb SINE MIR 37 138 -130 6 817 231 284 12 36 chr11 30457929 30458013 -91385843 + L2b LINE L2 3284 3365 -10 6 817 1071 30 0 0 chr11 30458470 30458601 -91385255 + (TG)n Simple_repeat Simple_repeat 1 131 0 6 817 270 0 0 0 chr11 30458601 30458630 -91385226 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 817 969 131 0 17 chr11 30458756 30458935 -91384921 + (CCCCCT)n Simple_repeat Simple_repeat 2 177 0 6 817 225 0 0 0 chr11 30459774 30459799 -91384057 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 817 366 23 0 0 chr11 30459799 30459841 -91384015 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 817 270 0 0 0 chr11 30459861 30459891 -91383965 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 817 216 0 0 0 chr11 30459891 30459914 -91383942 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 817 324 0 0 0 chr11 30459914 30459949 -91383907 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 817 213 39 0 0 chr11 30460287 30460313 -91383543 + (A)n Simple_repeat Simple_repeat 1 26 0 6 817 21934 73 24 16 chr11 30461172 30462987 -91380869 - L1Md_F2 LINE L1 -15 6567 4736 6 817 314 0 0 0 chr11 30462987 30463025 -91380831 - tRNA-Leu-TTG tRNA tRNA -48 38 1 6 817 21934 73 24 16 chr11 30463025 30465100 -91378756 - L1Md_F2 LINE L1 -15 4735 2640 6 817 1440 77 0 0 chr11 30465098 30465331 -91378525 - L1Md_F2 LINE L1 -3786 2097 1865 6 817 384 169 0 0 chr11 30465460 30465537 -91378319 + (TATG)n Simple_repeat Simple_repeat 4 80 0 6 817 225 94 0 0 chr11 30465809 30465841 -91378015 + (TCC)n Simple_repeat Simple_repeat 1 32 0 6 817 418 315 28 0 chr11 30465841 30465949 -91377907 - PB1D10 SINE Alu -6 111 1 6 817 420 161 0 0 chr11 30466065 30466146 -91377710 + (TATG)n Simple_repeat Simple_repeat 4 84 0 6 817 3147 136 53 7 chr11 30466150 30466698 -91377158 + L1Md_F LINE L1 299 871 -5648 6 817 1433 248 52 23 chr11 30466696 30466969 -91376887 + Lx6 LINE L1 7036 7319 -141 6 817 396 0 0 0 chr11 30466969 30467013 -91376843 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 6 817 1433 248 52 23 chr11 30467013 30467127 -91376729 + Lx6 LINE L1 7320 7432 -28 6 817 219 228 53 0 chr11 30467245 30467302 -91376554 + PB1D10 SINE Alu 35 94 -23 6 817 405 0 0 0 chr11 30467383 30467428 -91376428 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 6 817 363 88 366 0 chr11 30467428 30467512 -91376344 - B1_Mus1 SINE Alu -12 137 19 6 817 733 243 23 12 chr11 30467599 30467770 -91376086 + ID_B1 SINE B4 32 204 -20 6 817 1418 55 28 0 chr11 30468389 30468570 -91375286 + B2_Mm1t SINE B2 2 187 -6 6 817 23 0 0 0 chr11 30468575 30468598 -91375258 + AT_rich Low_complexity Low_complexity 1 23 0 6 817 207 0 0 0 chr11 30468929 30468952 -91374904 + (T)n Simple_repeat Simple_repeat 1 23 0 6 817 7715 41 8 6 chr11 30468973 30470068 -91373788 - L1Md_F2 LINE L1 0 6582 5485 6 817 3567 51 8 0 chr11 30470068 30470542 -91373314 + L1Md_F2 LINE L1 5010 5487 -396 6 817 270 0 0 0 chr11 30470682 30470712 -91373144 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 817 3031 145 13 6 chr11 30470749 30471221 -91372635 + RLTR21 LTR ERVK 1 475 -1097 6 817 25 0 0 0 chr11 30472539 30472564 -91371292 + AT_rich Low_complexity Low_complexity 1 25 0 6 817 753 22 0 0 chr11 30473525 30473616 -91370240 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 817 1157 37 0 0 chr11 30473630 30473766 -91370090 - B1_Mm SINE Alu -10 137 2 6 817 2875 80 10 5 chr11 30474722 30475123 -91368733 + RLTR21 LTR ERVK 457 859 -713 6 817 2080 102 12 60 chr11 30475123 30475457 -91368399 + ORR1A3 LTR MaLR 1 318 -8 6 817 2839 181 65 117 chr11 30475460 30475690 -91368166 + RLTR21 LTR ERVK 854 1107 -465 6 817 271 80 0 57 chr11 30475690 30475743 -91368113 + (TATG)n Simple_repeat Simple_repeat 3 52 0 6 817 2839 181 65 117 chr11 30475743 30476267 -91367589 + RLTR21 LTR ERVK 1108 1569 -3 6 817 213 39 0 0 chr11 30476921 30476947 -91366909 + (A)n Simple_repeat Simple_repeat 1 26 0 6 817 208 260 0 20 chr11 30476952 30477003 -91366853 + GA-rich Low_complexity Low_complexity 1 50 0 6 817 244 341 37 0 chr11 30477109 30477139 -91366717 + ID_B1 SINE B4 71 154 -69 6 817 250 235 0 0 chr11 30477139 30477190 -91366666 + PB1D10 SINE Alu 23 73 -44 6 817 326 310 33 66 chr11 30477179 30477300 -91366556 - B4A SINE B4 -175 117 1 6 817 1918 173 12 26 chr11 30477839 30478178 -91365678 + ORR1B1 LTR MaLR 1 334 -60 6 817 1672 173 43 34 chr11 30478176 30478500 -91365356 + MTB_Mm LTR MaLR 81 407 0 7 817 568 247 106 5 chr11 30479101 30479275 -91364581 + B3A SINE B2 6 191 -4 7 817 652 309 51 155 chr11 30481454 30481564 -91362292 + MLT2D LTR ERVL 3 80 -334 7 817 1763 160 57 9 chr11 30481564 30481879 -91361977 - Lx3B LINE L1 -2 6971 6642 7 817 652 309 51 155 chr11 30481879 30482182 -91361674 + MLT2D LTR ERVL 81 373 -41 7 817 225 132 0 0 chr11 30482182 30482220 -91361636 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 817 303 156 0 0 chr11 30482324 30482369 -91361487 + B4A SINE B4 171 215 -77 7 817 228 67 0 0 chr11 30482369 30482399 -91361457 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 7 817 185 94 31 0 chr11 30482408 30482440 -91361416 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 7 817 301 209 0 95 chr11 30482441 30482515 -91361341 + B4A SINE B4 226 292 0 7 817 24 0 0 0 chr11 30482520 30482544 -91361312 + AT_rich Low_complexity Low_complexity 1 24 0 7 817 234 81 0 0 chr11 30482629 30482666 -91361190 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 817 1429 234 28 16 chr11 30482704 30483021 -91360835 + Lx7 LINE L1 6313 6633 -1063 7 817 6768 93 3 17 chr11 30483023 30484307 -91359549 - L1_Mus2 LINE L1 0 6566 5300 7 817 3127 174 9 0 chr11 30484295 30484929 -91358927 - Lx LINE L1 -2128 3758 3119 7 817 8899 160 38 63 chr11 30484928 30486823 -91357033 + Lx LINE L1 3710 5294 -592 7 817 601 133 217 0 chr11 30486823 30486943 -91356913 + B1_Mus1 SINE Alu 3 148 0 7 817 8899 158 42 19 chr11 30486943 30487397 -91356459 + Lx LINE L1 5292 5785 -98 7 817 1039 166 11 21 chr11 30487397 30487588 -91356268 - B2_Mm1a SINE B2 -3 190 2 7 817 8899 159 112 14 chr11 30487588 30487773 -91356083 + Lx LINE L1 5786 5971 -1037 7 817 6337 52 1 0 chr11 30487764 30488585 -91355271 + L1Md_F2 LINE L1 4765 5586 -297 7 817 8179 44 0 0 chr11 30488585 30489569 -91354287 + L1Md_F2 LINE L1 5587 6570 -12 7 817 4784 114 4 13 chr11 30489562 30490267 -91353589 + Lx LINE L1 5956 6654 0 7 817 188 427 29 10 chr11 30491326 30491430 -91352426 - L2b LINE L2 -20 3355 3250 7 817 260 196 0 0 chr11 30493342 30493388 -91350468 + L2b LINE L2 3326 3371 -4 7 817 241 267 0 0 chr11 30493740 30493785 -91350071 + ID_B1 SINE B4 81 125 -99 7 817 236 30 30 0 chr11 30493842 30493875 -91349981 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 7 817 4475 40 54 4 chr11 30493990 30494549 -91349307 + LTRIS_Mus LTR ERV1 1 587 0 7 817 974 47 0 45 chr11 30494748 30494881 -91348975 + B1_Mus1 SINE Alu 1 127 -21 7 817 310 251 1 61 chr11 30494972 30495054 -91348802 + ID SINE ID 15 63 -161 7 817 558 0 0 0 chr11 30495054 30495116 -91348740 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 817 310 349 46 33 chr11 30495116 30495132 -91348724 + ID SINE ID 64 84 -140 7 817 365 327 9 37 chr11 30495132 30495240 -91348616 + PB1D10 SINE Alu 4 108 -9 7 817 459 354 97 26 chr11 30495295 30495562 -91348294 - LTR33 LTR ERVL -44 471 186 7 817 1222 46 0 0 chr11 30495562 30495713 -91348143 + L1Md_F2 LINE L1 5436 5586 -297 7 817 8217 43 0 4 chr11 30495713 30496713 -91347143 + L1Md_F2 LINE L1 5587 6582 0 7 817 2721 67 0 6 chr11 30496833 30497181 -91346675 + ORR1A1 LTR MaLR 1 346 0 7 817 303 241 133 67 chr11 30497204 30497324 -91346532 + MLT1A1 LTR MaLR 1 128 -280 7 817 571 310 36 25 chr11 30497685 30497960 -91345896 - RLTR16 LTR ERVK -227 278 1 7 817 593 284 66 10 chr11 30497960 30498142 -91345714 + MLT1A1 LTR MaLR 188 380 -28 7 817 741 137 92 0 chr11 30498151 30498282 -91345574 - Lx2 LINE L1 -4 6993 6851 7 817 211 296 215 45 chr11 30498474 30498697 -91345159 - L2c LINE L2 -69 3318 3058 7 817 621 309 82 56 chr11 30499043 30499310 -91344546 - B4A SINE B4 -18 274 1 7 817 33 66 0 0 chr11 30500289 30500350 -91343506 + AT_rich Low_complexity Low_complexity 1 61 0 1 817 2499 131 52 7 chr11 30500694 30501116 -91342740 - BGLII_B LTR ERVK 0 441 1 2 817 22 0 0 0 chr11 30501301 30501323 -91342533 + AT_rich Low_complexity Low_complexity 1 22 0 3 817 1130 153 0 0 chr11 30501768 30501957 -91341899 + Lx LINE L1 6451 6639 -15 4 817 939 57 0 0 chr11 30501957 30502079 -91341777 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 5 817 328 258 108 0 chr11 30502231 30502324 -91341532 - PB1D10 SINE Alu -14 103 1 6 817 977 270 57 18 chr11 30502820 30503099 -91340757 + B4A SINE B4 1 290 -2 7 817 690 255 20 27 chr11 30503221 30503370 -91340486 - RSINE1 SINE B4 -14 151 4 8 817 468 191 0 0 chr11 30504815 30504909 -91338947 + (TA)n Simple_repeat Simple_repeat 1 94 0 9 817 459 92 0 0 chr11 30505629 30505694 -91338162 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 817 483 136 191 8 chr11 30505970 30506096 -91337760 + RLTR19-int LTR ERVK 1176 1324 -4813 1 817 1294 168 118 16 chr11 30506093 30506414 -91337442 + RLTR19-int LTR ERVK 2493 2846 -3291 1 817 315 176 103 0 chr11 30506427 30506495 -91337361 + RLTR19-int LTR ERVK 2911 2985 -3152 1 817 297 175 0 16 chr11 30506497 30506561 -91337295 + MYSERV6-int LTR ERVK 8626 8688 -271 1 817 327 244 44 66 chr11 30506596 30506732 -91337124 + RLTR19-int LTR ERVK 3176 3308 -2829 1 817 279 194 0 15 chr11 30506724 30506792 -91337064 + MYSERV6-int LTR ERVK 8714 8780 -179 1 817 296 180 10 128 chr11 30506856 30506958 -91336898 + RLTR19-int LTR ERVK 3489 3578 -2559 1 817 1114 55 0 20 chr11 30507183 30507330 -91336526 + B1_Mus2 SINE Alu 1 144 -3 1 817 315 71 0 0 chr11 30507330 30507372 -91336484 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 817 724 241 130 55 chr11 30507384 30507611 -91336245 + RMER17C-int LTR ERVK 2639 2873 -365 1 817 459 0 0 0 chr11 30507611 30507662 -91336194 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 817 724 241 130 55 chr11 30507662 30507741 -91336115 + RMER17C-int LTR ERVK 2874 2967 -271 1 817 1319 209 89 74 chr11 30507897 30508289 -91335567 + RMER10B LTR ERVL 1 398 0 1 817 347 324 0 0 chr11 30508298 30508406 -91335450 + Lx8 LINE L1 7047 7154 -319 1 817 1148 159 424 7 chr11 30508407 30508677 -91335179 - ORR1C2 LTR MaLR 0 384 2 2 817 936 223 109 7 chr11 30508678 30508971 -91334885 + Lx8 LINE L1 7151 7473 0 1 817 1086 98 7 0 chr11 30508981 30509134 -91334722 + B2_Mm1t SINE B2 1 154 -39 2 817 349 168 313 17 chr11 30509179 30509294 -91334562 + B2_Mm2 SINE B2 47 195 0 2 817 225 108 0 0 chr11 30509294 30509331 -91334525 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 2 817 7577 52 4 0 chr11 30509955 30511353 -91332503 - L1Md_F2 LINE L1 -3 6579 5174 2 817 1377 259 34 36 chr11 30511534 30511946 -91331910 + RLTR42-int LTR ERVK 491 901 -4621 2 817 591 174 70 51 chr11 30511969 30512126 -91331730 + RLTR42-int LTR ERVK 1000 1159 -4363 2 817 443 247 55 37 chr11 30512286 30512450 -91331406 + RLTR42-int LTR ERVK 1126 1292 -4230 2 817 1587 124 142 6 chr11 30512444 30512761 -91331095 + RLTR42-int LTR ERVK 2613 2972 -2550 2 817 3187 231 82 116 chr11 30512837 30513859 -91329997 + RLTR42-int LTR ERVK 4010 5066 -456 2 817 665 118 0 0 chr11 30513859 30513952 -91329904 - B1_Mus2 SINE Alu 0 147 55 2 817 3187 231 82 116 chr11 30513952 30514229 -91329627 + RLTR42-int LTR ERVK 5067 5354 -168 2 817 306 148 0 0 chr11 30514710 30514764 -91329092 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 817 304 293 12 0 chr11 30514781 30514863 -91328993 + PB1D10 SINE Alu 33 115 -2 2 817 423 171 136 45 chr11 30514916 30515026 -91328830 - PB1D7 SINE Alu 0 120 1 2 817 301 268 42 14 chr11 30515057 30515129 -91328727 + ID4_ SINE ID 8 81 -2 3 817 481 241 119 51 chr11 30515160 30515453 -91328403 + L1MC1 LINE L1 5717 6029 -315 3 817 280 387 82 27 chr11 30515603 30515749 -91328107 + RSINE1 SINE B4 2 155 -10 3 817 2556 153 63 35 chr11 30515818 30516358 -91327498 + Lx5 LINE L1 6493 7047 -3 3 817 26 0 0 27 chr11 30516370 30516389 -91327467 + AT_rich Low_complexity Low_complexity 1 19 0 3 817 730 176 20 60 chr11 30516389 30516540 -91327316 + B1_Mm SINE Alu 3 147 0 3 817 26 0 0 27 chr11 30516540 30516557 -91327299 + AT_rich Low_complexity Low_complexity 1 17 0 3 817 413 253 0 0 chr11 30516560 30516639 -91327217 + B1_Mur4 SINE Alu 19 97 -53 3 817 627 81 0 0 chr11 30516641 30516727 -91327129 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 3 817 329 264 99 94 chr11 30516753 30516945 -91326911 + B3A SINE B2 2 194 -4 3 817 201 74 0 0 chr11 30517041 30517068 -91326788 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 817 454 305 97 41 chr11 30517542 30517737 -91326119 - MER58A DNA MER1_type -1 223 18 4 817 189 259 19 0 chr11 30518818 30518872 -91324984 + L2 LINE L2 2311 2365 -1054 4 817 563 232 13 53 chr11 30519312 30519462 -91324394 - RLTR20D LTR ERVK -12 566 423 4 817 714 254 100 71 chr11 30519447 30519727 -91324129 - RLTR20D LTR ERVK -280 288 1 4 817 3556 196 76 34 chr11 30519768 30521396 -91322460 - MYSERV16_I-int LTR ERVK -21 2821 388 4 817 5706 87 15 35 chr11 30521396 30522266 -91321590 - L1_Mus3 LINE L1 -1 6637 5785 4 817 3141 192 124 34 chr11 30522266 30522617 -91321239 - MYSERV16_I-int LTR ERVK -1939 387 5 4 817 24 53 0 0 chr11 30522931 30522969 -91320887 + AT_rich Low_complexity Low_complexity 1 38 0 4 817 358 281 20 20 chr11 30523549 30523647 -91320209 - RLTR20A2 LTR ERVK 0 578 481 4 817 3756 148 26 82 chr11 30523668 30524449 -91319407 + L1VL2 LINE L1 98 834 -5501 4 817 1956 73 3 68 chr11 30524449 30524617 -91319239 + Lx6 LINE L1 954 1122 -5512 4 817 1189 42 0 14 chr11 30524617 30524754 -91319102 + B1_Mus2 SINE Alu 1 137 -10 4 817 357 43 0 0 chr11 30524754 30524801 -91319055 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 817 1956 78 3 65 chr11 30524807 30524985 -91318871 + Lx6 LINE L1 1123 1277 -4600 4 817 9347 60 29 8 chr11 30525004 30525023 -91318833 - RLTR22_Mus LTR ERVK -492 1316 1292 5 817 243 0 0 0 chr11 30525023 30525050 -91318806 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 817 9347 60 29 8 chr11 30525050 30526319 -91317537 - RLTR22_Mus LTR ERVK -517 1291 3 5 817 685 174 7 0 chr11 30526319 30526463 -91317393 + Lx6 LINE L1 3615 3759 -2121 4 817 6990 166 28 36 chr11 30526459 30528011 -91315845 + Lx6 LINE L1 4056 5595 -285 4 817 684 214 15 138 chr11 30528012 30528272 -91315584 + Lx6 LINE L1 6026 6253 -1207 4 817 3994 55 0 37 chr11 30528270 30528833 -91315023 - L1_Mus2 LINE L1 -438 6128 5587 5 817 3583 55 2 2 chr11 30528839 30529280 -91314576 + L1_Mus2 LINE L1 6126 6566 0 5 817 711 0 0 0 chr11 30529291 30529370 -91314486 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 5 817 271 196 0 0 chr11 30529372 30529418 -91314438 + MTD LTR MaLR 208 253 -166 5 817 925 249 89 11 chr11 30529392 30529674 -91314182 + ORR1E LTR MaLR 53 359 0 5 817 1473 39 0 0 chr11 30530074 30530254 -91313602 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 817 225 94 0 0 chr11 30530277 30530309 -91313547 + (AGGGGG)n Simple_repeat Simple_repeat 1 32 0 5 817 1795 191 30 25 chr11 30530707 30530726 -91313130 + ORR1C2 LTR MaLR 3 22 -362 5 817 190 0 32 32 chr11 30530726 30530757 -91313099 + (CACCC)n Simple_repeat Simple_repeat 1 31 0 6 817 1795 193 29 26 chr11 30530757 30531111 -91312745 + ORR1C2 LTR MaLR 23 414 -7 5 817 689 211 171 0 chr11 30531322 30531497 -91312359 + B3 SINE B2 5 209 -7 6 817 207 298 0 17 chr11 30531596 30531654 -91312202 + MIRb SINE MIR 157 213 -55 6 817 890 254 5 5 chr11 30532444 30532642 -91311214 + B3 SINE B2 3 200 -16 6 817 441 0 0 0 chr11 30532642 30532691 -91311165 + (TAAAA)n Simple_repeat Simple_repeat 5 53 0 6 817 22 0 0 0 chr11 30533246 30533268 -91310588 + AT_rich Low_complexity Low_complexity 1 22 0 6 817 930 57 0 16 chr11 30533849 30533973 -91309883 + B1_Mus2 SINE Alu 25 146 -1 6 817 189 0 0 0 chr11 30533973 30533994 -91309862 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 817 426 267 157 8 chr11 30534093 30534214 -91309642 + B1F1 SINE Alu 10 148 -1 6 817 309 261 0 0 chr11 30534659 30534728 -91309128 + BC1_Mm scRNA scRNA 2 70 -82 6 817 243 260 49 49 chr11 30534852 30534933 -91308923 - Charlie25 DNA MER1_type -324 2200 2120 7 817 267 103 0 0 chr11 30535157 30535196 -91308660 + (CCA)n Simple_repeat Simple_repeat 3 41 0 7 817 238 278 163 20 chr11 30535239 30535441 -91308415 + L1MC2 LINE L1 5860 6090 -254 7 817 21 0 0 0 chr11 30535724 30535745 -91308111 + AT_rich Low_complexity Low_complexity 1 21 0 7 817 257 312 25 0 chr11 30536050 30536130 -91307726 + ID4_ SINE ID 2 83 0 7 817 253 318 0 0 chr11 30536349 30536412 -91307444 + ID4 SINE ID 8 70 -13 7 817 246 325 0 59 chr11 30536724 30536809 -91307047 + ID2 SINE ID 1 80 -3 7 817 226 362 8 57 chr11 30536809 30536847 -91307009 + B3A SINE B2 1 117 -81 7 817 225 67 0 0 chr11 30537180 30537210 -91306646 + L1VL4 LINE L1 206 235 -6067 7 817 5565 75 10 1 chr11 30537210 30538666 -91305190 + L1VL4 LINE L1 210 1678 -1881 7 817 327 376 52 23 chr11 30538960 30539134 -91304722 + L2 LINE L2 2701 2879 -540 7 817 410 239 31 0 chr11 30539459 30539558 -91304298 - PB1D10 SINE Alu 0 117 10 8 102 1143 62 7 0 chr11 30539644 30539788 -91304068 + B1_Mus1 SINE Alu 1 145 -3 8 818 207 0 0 0 chr11 30539789 30539812 -91304044 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 818 2748 122 2 0 chr11 30540124 30540568 -91303288 - MusHAL1 LINE L1 -1111 1601 1157 8 818 363 277 96 0 chr11 30540583 30540749 -91303107 + L1MC3 LINE L1 7202 7383 -402 8 818 3027 54 0 10 chr11 30540753 30541145 -91302711 + L1Md_F2 LINE L1 6195 6582 0 8 818 334 279 50 67 chr11 30541160 30541259 -91302597 + RSINE1 SINE B4 5 105 -60 8 818 435 354 6 22 chr11 30541259 30541441 -91302415 + B3A SINE B2 4 182 -16 8 818 334 279 50 67 chr11 30541441 30541460 -91302396 + RSINE1 SINE B4 106 121 -44 8 818 316 113 0 36 chr11 30541638 30541693 -91302163 - MT2A LTR ERVL -480 53 1 8 818 328 143 14 54 chr11 30541742 30541816 -91302040 - ORR1A3-int LTR MaLR -1326 637 567 8 818 519 200 9 9 chr11 30541829 30541940 -91301916 - MERVL_2A-int LTR ERVL -76 5685 5575 9 818 1761 172 18 113 chr11 30541940 30542366 -91301490 + ORR1B1 LTR MaLR 1 374 -5 9 818 375 226 57 0 chr11 30542376 30542482 -91301374 + Lx4B LINE L1 6946 7057 -1 9 818 369 105 18 0 chr11 30542482 30542539 -91301317 + ORR1B1 LTR MaLR 337 394 0 9 818 1979 126 9 3 chr11 30542540 30542859 -91300997 - MERVL_2A-int LTR ERVL -183 5578 5258 9 818 3711 189 26 1 chr11 30542847 30543574 -91300282 - MERVL_2A-int LTR ERVL -1608 4153 3409 9 818 10629 142 40 3 chr11 30543569 30545344 -91298512 - MERVL_2A-int LTR ERVL -2480 3281 1442 9 818 6575 155 65 3 chr11 30545374 30546602 -91297254 - MERVL_2A-int LTR ERVL -4417 1344 41 9 818 1266 59 12 6 chr11 30546602 30546773 -91297083 + B2_Mm2 SINE B2 2 173 -22 9 818 262 146 0 0 chr11 30546812 30546867 -91296989 - MERVL_2A-int LTR ERVL -5706 55 1 9 818 1111 243 62 82 chr11 30546867 30547369 -91296487 - MT2B LTR ERVL 0 601 20 9 818 309 328 98 44 chr11 30547453 30547657 -91296199 + Charlie2a DNA MER1_type 93 307 -2554 9 818 934 65 0 0 chr11 30547967 30548091 -91295765 + B1_Mm SINE Alu 14 137 -10 9 818 225 214 0 0 chr11 30548109 30548151 -91295705 + A-rich Low_complexity Low_complexity 1 42 0 9 818 901 227 3 3 chr11 30548154 30548463 -91295393 + GA-rich Low_complexity Low_complexity 1 309 0 9 818 318 302 36 54 chr11 30548498 30548610 -91295246 - ID_B1 SINE B4 -114 110 1 9 818 258 200 0 0 chr11 30548691 30548736 -91295120 - B1_Mus2 SINE Alu -58 89 45 1 818 337 243 35 35 chr11 30548755 30548900 -91294956 + Charlie2a DNA MER1_type 2643 2787 -74 9 818 2078 113 99 84 chr11 30550129 30550544 -91293312 + MTC LTR MaLR 1 421 0 1 818 1880 176 80 14 chr11 30550652 30551014 -91292842 + ORR1B1 LTR MaLR 1 386 -8 1 818 1178 62 0 7 chr11 30551321 30551468 -91292388 - B1_Mus2 SINE Alu -1 146 1 1 818 204 40 0 0 chr11 30551602 30551627 -91292229 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 818 600 14 0 0 chr11 30551627 30551695 -91292161 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 818 763 207 0 7 chr11 30551700 30551841 -91292015 + B1_Mur1 SINE Alu 2 141 -8 1 818 1072 79 0 7 chr11 30552598 30552734 -91291122 + B1_Mus1 SINE Alu 1 136 -12 1 818 645 58 0 0 chr11 30552734 30552820 -91291036 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 1 818 309 219 0 0 chr11 30552923 30552996 -91290860 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 818 10853 156 45 13 chr11 30553304 30556361 -91287495 + Lx5 LINE L1 3871 7047 -3 1 818 439 70 0 0 chr11 30556375 30556432 -91287424 + ORR1B1 LTR MaLR 338 394 0 1 818 1567 47 5 0 chr11 30556609 30556801 -91287055 + B2_Mm1t SINE B2 1 193 0 1 818 431 234 64 0 chr11 30556838 30556932 -91286924 + PB1D10 SINE Alu 1 100 -17 1 818 23 0 0 0 chr11 30557062 30557085 -91286771 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 261 313 25 42 chr11 30557115 30557235 -91286621 + PB1D7 SINE Alu 2 119 -1 1 818 227 167 0 0 chr11 30557362 30557398 -91286458 + U2 snRNA snRNA 1 36 -152 1 818 245 128 0 21 chr11 30557658 30557706 -91286150 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 818 462 296 9 0 chr11 30557729 30557837 -91286019 - RSINE1 SINE B4 -43 122 14 1 818 479 231 36 29 chr11 30558116 30558254 -91285602 - RLTR23 LTR ERV1 -4 426 288 1 818 525 279 68 87 chr11 30558574 30558688 -91285168 + RMER10A LTR ERVL 122 222 -220 1 818 594 0 0 0 chr11 30558688 30558754 -91285102 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 818 525 279 68 87 chr11 30558754 30558771 -91285085 + RMER10A LTR ERVL 223 236 -206 1 818 431 136 97 0 chr11 30558771 30558874 -91284982 - Lx4B LINE L1 0 7058 6946 1 818 525 279 68 87 chr11 30558874 30559051 -91284805 + RMER10A LTR ERVL 237 425 -17 1 818 212 330 61 26 chr11 30559074 30559189 -91284667 - MIRc SINE MIR -65 203 85 1 818 876 249 39 99 chr11 30561332 30561764 -91282092 + MYSERV6-int LTR ERVK 8257 8662 -297 1 818 254 95 24 0 chr11 30562150 30562192 -91281664 + (AGGGGG)n Simple_repeat Simple_repeat 1 43 0 1 818 23501 119 90 29 chr11 30562760 30568660 -91275196 + L1_Mus2 LINE L1 244 6566 0 1 818 23 0 0 0 chr11 30568663 30568686 -91275170 + AT_rich Low_complexity Low_complexity 1 23 0 1 818 1226 41 0 0 chr11 30568695 30568841 -91275015 + B1_Mm SINE Alu 2 147 0 1 818 440 59 15 0 chr11 30568873 30568941 -91274915 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 1 818 427 254 26 17 chr11 30569224 30569340 -91274516 + RLTR25B LTR ERVK 898 1014 -14 1 818 722 245 0 7 chr11 30569333 30569473 -91274383 - B3A SINE B2 -57 141 3 1 818 387 0 0 0 chr11 30569485 30569528 -91274328 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 818 398 336 31 47 chr11 30569532 30569660 -91274196 - B3A SINE B2 -15 183 58 1 818 457 284 124 0 chr11 30569903 30570019 -91273837 + B3 SINE B2 27 152 -64 1 818 408 20 0 0 chr11 30570019 30570068 -91273788 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 818 457 284 124 0 chr11 30570068 30570120 -91273736 + B3 SINE B2 153 215 -1 1 818 522 0 0 0 chr11 30570130 30570188 -91273668 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 818 525 32 0 0 chr11 30570376 30570439 -91273417 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 818 881 210 30 0 chr11 30570449 30570616 -91273240 - B3 SINE B2 -44 172 1 1 818 691 225 36 0 chr11 30570810 30570948 -91272908 - B3 SINE B2 -10 206 64 1 818 590 281 80 33 chr11 30571263 30571539 -91272317 - B4A SINE B4 -3 289 1 1 818 384 77 0 0 chr11 30571625 30571677 -91272179 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 1 818 836 57 186 0 chr11 30571687 30571811 -91272045 - B1_Mus2 SINE Alu 0 147 1 1 818 207 311 61 47 chr11 30572089 30572231 -91271625 - MIRc SINE MIR -36 226 98 1 818 255 396 92 23 chr11 30572674 30572891 -91270965 + MLT1K LTR MaLR 70 301 -294 1 818 389 317 39 68 chr11 30573783 30574074 -91269782 + RSINE1 SINE B4 15 292 0 1 818 22 0 0 0 chr11 30574133 30574155 -91269701 + AT_rich Low_complexity Low_complexity 1 22 0 1 818 734 253 11 27 chr11 30574200 30574383 -91269473 + B3A SINE B2 1 180 -18 1 818 215 240 0 0 chr11 30574420 30574470 -91269386 + B3A SINE B2 1 50 -148 1 818 2164 147 185 2 chr11 30575127 30575543 -91268313 - RLTR25B LTR ERVK 0 1028 537 1 818 325 300 33 22 chr11 30576079 30576171 -91267685 + RSINE1 SINE B4 32 124 -41 1 818 1618 179 105 31 chr11 30577276 30577628 -91266228 - ORR1C1 LTR MaLR 0 378 1 1 818 824 191 25 0 chr11 30577961 30578118 -91265738 + ORR1D1 LTR MaLR 1 161 -213 1 818 1783 249 61 41 chr11 30578272 30579149 -91264707 + L1Md_F LINE L1 128 1014 -5527 1 818 307 192 0 0 chr11 30579150 30579202 -91264654 - B3 SINE B2 -163 53 2 1 818 698 280 69 15 chr11 30579221 30579424 -91264432 + MLT2D LTR ERVL 189 402 -12 1 818 441 95 0 0 chr11 30579593 30579656 -91264200 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 818 595 0 13 13 chr11 30579867 30579943 -91263913 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 818 534 278 125 12 chr11 30580016 30580264 -91263592 - L1M4 LINE L1 -499 5679 5404 1 818 318 218 199 20 chr11 30580281 30580482 -91263374 - L1M4 LINE L1 -910 5236 5000 1 818 384 327 12 74 chr11 30580564 30580629 -91263227 - RSINE1 SINE B4 -10 155 96 1 818 599 0 14 0 chr11 30580629 30580700 -91263156 + (TC)n Simple_repeat Simple_repeat 2 73 0 1 818 479 17 17 0 chr11 30580700 30580759 -91263097 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 818 384 327 12 74 chr11 30580759 30580854 -91263002 - RSINE1 SINE B4 -70 95 5 1 818 712 282 45 14 chr11 30580867 30581155 -91262701 - L1M4 LINE L1 -1162 4984 4688 1 818 231 371 146 0 chr11 30581168 30581257 -91262599 + RSINE1 SINE B4 6 107 -58 1 818 318 308 0 13 chr11 30581369 30581448 -91262408 - ID4_ SINE ID 0 83 6 1 818 213 329 12 24 chr11 30581459 30581543 -91262313 - PB1D10 SINE Alu -2 115 33 1 818 991 288 53 2 chr11 30581549 30581981 -91261875 - L1M4 LINE L1 -1764 4382 3929 1 818 589 303 7 7 chr11 30582059 30582212 -91261644 - RSINE1 SINE B4 -2 163 11 1 818 261 0 0 0 chr11 30583048 30583077 -91260779 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1 818 623 136 0 39 chr11 30583077 30583207 -91260649 - Lx3A LINE L1 -16 6965 6841 1 818 328 199 75 82 chr11 30583545 30583722 -91260134 + RLTR43A LTR ERVK 201 343 -21 1 818 204 40 0 0 chr11 30584024 30584049 -91259807 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1 818 221 83 28 0 chr11 30584306 30584342 -91259514 + (AGGGGG)n Simple_repeat Simple_repeat 1 37 0 1 818 1667 184 186 33 chr11 30584343 30584833 -91259023 + ETnERV2-int LTR ERVK 255 819 -4587 1 818 2384 189 19 13 chr11 30584836 30585314 -91258542 + ETnERV2-int LTR ERVK 1078 1558 -3848 1 818 1850 254 53 14 chr11 30585330 30586020 -91257836 + ETnERV2-int LTR ERVK 4104 4534 -2872 1 818 3188 169 12 0 chr11 30586106 30586680 -91257176 + ETnERV2-int LTR ERVK 5146 5726 -1680 1 818 7819 44 0 0 chr11 30586693 30587903 -91255953 - L1Md_F2 LINE L1 -12 6570 5361 1 818 307 211 40 0 chr11 30587903 30587979 -91255877 + ETnERV2-int LTR ERVK 5715 5793 -1613 1 818 1000 142 401 60 chr11 30587990 30588237 -91255619 + RMER16-int LTR ERVK 3660 3990 -1416 1 818 281 26 26 0 chr11 30588803 30588841 -91255015 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 818 3174 34 5 3 chr11 30588871 30589257 -91254599 - L1Md_F3 LINE L1 -2 6582 6196 1 818 349 67 0 0 chr11 30589257 30589302 -91254554 + L1_Mm LINE L1 5528 5572 -311 1 818 1290 276 69 13 chr11 30589999 30590392 -91253464 + ETnERV2-int LTR ERVK 6644 7058 -348 1 818 444 255 11 103 chr11 30590549 30590733 -91253123 + RLTR43A LTR ERVK 198 364 0 1 818 345 174 0 0 chr11 30591580 30591649 -91252207 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 818 8150 91 8 16 chr11 30591729 30593007 -91250849 + L1_Mus1 LINE L1 3269 4536 -1347 1 818 2786 108 17 36 chr11 30593000 30593472 -91250384 - L1_Mus2 LINE L1 -99 6467 6005 1 818 7698 90 3 15 chr11 30593445 30594633 -91249223 - L1_Mm LINE L1 -1081 4802 3629 1 818 7138 76 1 10 chr11 30594633 30595935 -91247921 + L1_Mus1 LINE L1 5277 6567 0 1 818 726 12 0 0 chr11 30596187 30596270 -91247586 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1 818 238 245 57 0 chr11 30596566 30596619 -91247237 - MLT1N2 LTR MaLR -479 83 28 1 818 273 320 30 96 chr11 30597023 30597158 -91246698 - LTR33A_ LTR ERVL -326 205 80 1 818 992 258 84 138 chr11 30597202 30597629 -91246227 + MTD LTR MaLR 1 404 -15 1 818 1061 82 0 52 chr11 30597702 30597857 -91245999 + B1_Mm SINE Alu 1 147 0 1 818 187 367 43 68 chr11 30597865 30597982 -91245874 + L2b LINE L2 3239 3352 -23 1 818 767 288 42 5 chr11 30597984 30598197 -91245659 + ID_B1 SINE B4 3 223 -1 1 818 271 224 0 0 chr11 30598235 30598284 -91245572 + B4A SINE B4 18 66 -226 1 818 320 298 42 84 chr11 30598638 30598781 -91245075 + B1F1 SINE Alu 4 140 -9 1 818 3079 65 9 5 chr11 30598945 30599364 -91244492 - BGLII LTR ERVK 0 421 1 1 818 1641 162 98 3 chr11 30599918 30600102 -91243754 - ORR1B2 LTR MaLR -8 359 159 1 818 632 24 12 0 chr11 30600102 30600184 -91243672 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 818 1641 162 98 3 chr11 30600184 30600327 -91243529 - ORR1B2 LTR MaLR -209 158 2 1 818 231 36 0 0 chr11 30600350 30600378 -91243478 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 818 2025 115 69 0 chr11 30600729 30601034 -91242822 + ORR1A2 LTR MaLR 1 326 -1 1 818 41 21 0 0 chr11 30601718 30601766 -91242090 + AT_rich Low_complexity Low_complexity 1 48 0 1 818 270 0 0 0 chr11 30601769 30601799 -91242057 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 818 548 310 35 7 chr11 30601799 30601942 -91241914 - B3A SINE B2 -50 148 2 1 818 3150 29 45 0 chr11 30601979 30602358 -91241498 - MTA_Mm LTR MaLR 0 396 1 1 818 324 309 21 0 chr11 30602711 30602805 -91241051 + PB1D10 SINE Alu 6 101 -16 2 818 498 246 139 0 chr11 30602836 30602958 -91240898 + RSINE1 SINE B4 5 143 -22 2 818 215 224 67 33 chr11 30603118 30603129 -91240727 - B1F SINE Alu -3 146 137 2 818 191 36 0 35 chr11 30603129 30603158 -91240698 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2 818 215 224 67 33 chr11 30603158 30603206 -91240650 - B1F SINE Alu -13 136 85 2 818 1092 70 35 0 chr11 30603259 30603402 -91240454 - B1_Mus1 SINE Alu 0 148 1 2 818 243 250 0 0 chr11 30603447 30603499 -91240357 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 818 777 11 0 0 chr11 30603505 30603595 -91240261 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 2 818 885 107 0 0 chr11 30603809 30603940 -91239916 + (TCC)n Simple_repeat Simple_repeat 3 133 0 2 818 1132 43 7 7 chr11 30603940 30604077 -91239779 - B1_Mus1 SINE Alu -6 142 5 2 818 665 210 34 34 chr11 30604077 30604225 -91239631 - B1_Mur3 SINE Alu 0 149 2 2 818 314 256 69 21 chr11 30604637 30604764 -91239092 + PB1D7 SINE Alu 19 149 0 2 818 1124 62 7 7 chr11 30606251 30606397 -91237459 - B1_Mus2 SINE Alu 0 147 2 2 818 432 0 0 0 chr11 30606712 30606760 -91237096 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 818 369 252 35 32 chr11 30607053 30607256 -91236600 + RLTR18-int LTR ERVK 4151 4298 -1063 2 818 582 15 0 0 chr11 30608483 30608550 -91235306 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 818 247 352 0 14 chr11 30608550 30608622 -91235234 - ID4_ SINE ID -11 72 2 2 818 1232 257 105 35 chr11 30608840 30609228 -91234628 + MTD LTR MaLR 5 406 -13 2 818 1417 130 225 0 chr11 30609276 30609538 -91234318 - ORR1A4 LTR MaLR -8 321 1 2 818 441 225 22 0 chr11 30609542 30609631 -91234225 - PB1D7 SINE Alu -12 108 18 2 818 313 258 88 88 chr11 30609714 30609743 -91234113 - B2_Mm2 SINE B2 -9 186 159 2 818 441 0 0 0 chr11 30609743 30609792 -91234064 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 818 619 258 88 88 chr11 30609792 30609932 -91233924 - B3A SINE B2 -34 164 17 2 818 261 304 167 2 chr11 30610685 30610799 -91233057 - MIR SINE MIR -125 151 23 2 818 368 177 37 37 chr11 30610799 30610881 -91232975 - MER45A DNA Tip100 0 178 97 2 818 243 274 40 14 chr11 30610881 30610955 -91232901 + ID4 SINE ID 3 78 -5 2 818 543 239 147 16 chr11 30611161 30611352 -91232504 + B3 SINE B2 1 216 0 2 818 5252 122 0 9 chr11 30611361 30612297 -91231559 - Lx LINE L1 -267 6387 5460 2 818 757 123 0 61 chr11 30612302 30612449 -91231407 - Lx LINE L1 -732 5151 5014 2 818 2850 75 18 0 chr11 30612447 30612846 -91231010 + L1_Mus3 LINE L1 5906 6311 -327 2 818 407 299 0 33 chr11 30612943 30613064 -91230792 + PB1D7 SINE Alu 1 117 -3 2 818 454 244 97 13 chr11 30613806 30613960 -91229896 - MER20B DNA MER1_type -2 781 615 2 818 1132 51 0 0 chr11 30613970 30614107 -91229749 + B1_Mus1 SINE Alu 2 138 -10 2 818 830 37 18 0 chr11 30614107 30614216 -91229640 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2 818 489 226 35 59 chr11 30614333 30614502 -91229354 - RNLTR23 LTR ERVK 0 642 478 2 818 32752 82 8 3 chr11 30614647 30620566 -91223290 - L1Md_F2 LINE L1 0 6582 631 2 818 261 288 37 12 chr11 30620734 30620815 -91223041 - MER20B DNA MER1_type -657 126 44 2 818 730 112 0 8 chr11 30621460 30621577 -91222279 - L1_Mus2 LINE L1 0 6566 6451 2 818 20979 164 9 65 chr11 30621584 30623356 -91220500 - L1_Mus2 LINE L1 -375 6191 4417 2 818 884 195 24 132 chr11 30623356 30623711 -91220145 - RLTRETN_Mm LTR ERVK 0 409 1 2 818 20979 164 9 65 chr11 30623711 30627061 -91216795 - L1_Mus2 LINE L1 -375 4416 1059 2 818 537 225 31 62 chr11 30627095 30627223 -91216633 - ID_B1 SINE B4 -99 125 2 2 818 312 70 0 0 chr11 30627250 30627293 -91216563 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 818 276 246 0 84 chr11 30627293 30627364 -91216492 - B1F SINE Alu -52 97 33 2 818 356 267 42 33 chr11 30627379 30627499 -91216357 - B3 SINE B2 0 216 96 2 818 12058 105 52 5 chr11 30627499 30629620 -91214236 + L1VL1 LINE L1 905 3128 -570 2 818 1350 116 8 13 chr11 30629617 30629852 -91214004 + L1_Mur2 LINE L1 3955 4188 -1689 2 818 1267 107 0 0 chr11 30629836 30630032 -91213824 - L1_Mm LINE L1 -751 5132 4937 2 818 295 283 156 6 chr11 30630110 30630308 -91213548 + L1MC3 LINE L1 7214 7559 -483 2 818 285 29 0 0 chr11 30630316 30630350 -91213506 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 818 22 56 0 0 chr11 30630408 30630444 -91213412 + AT_rich Low_complexity Low_complexity 1 36 0 2 818 1681 168 42 138 chr11 30630852 30631323 -91212533 + RLTR23 LTR ERV1 1 426 -4 2 818 1147 197 48 0 chr11 30631339 30631588 -91212268 - Lx3C LINE L1 -2 6974 6714 2 818 2242 130 0 3 chr11 30631706 30632046 -91211810 + L1_Mm LINE L1 5491 5829 -54 2 818 213 273 18 0 chr11 30632204 30632259 -91211597 + B1F SINE Alu 24 79 -70 2 818 430 229 232 75 chr11 30632964 30633205 -91210651 + RLTR25B LTR ERVK 750 1028 0 2 818 245 319 85 50 chr11 30633272 30633473 -91210383 - MER34A LTR ERV1 -311 260 53 2 818 2279 98 29 0 chr11 30634083 30634399 -91209457 - ORR1A2 LTR MaLR 0 327 3 2 818 6532 113 4 2 chr11 30634401 30635334 -91208522 - ORR1A2-int LTR MaLR 0 1963 1029 2 818 992 95 7 20 chr11 30635335 30635346 -91208510 - B1_Mus1 SINE Alu 0 148 139 2 818 288 77 0 0 chr11 30635346 30635385 -91208471 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 818 992 95 7 20 chr11 30635385 30635523 -91208333 - B1_Mus1 SINE Alu -10 138 1 2 818 266 275 13 39 chr11 30635523 30635570 -91208286 - ORR1A2-int LTR MaLR -863 646 604 2 818 33314 89 14 9 chr11 30635570 30641852 -91202004 - L1Md_F2 LINE L1 -46 6536 210 2 818 3750 186 138 18 chr11 30641852 30642417 -91201439 - ORR1A2-int LTR MaLR -916 1047 406 2 818 2726 24 0 63 chr11 30642417 30642766 -91201090 + IAPLTR2b LTR ERVK 1 327 0 2 818 3750 186 138 18 chr11 30642766 30643135 -91200721 - ORR1A2-int LTR MaLR -1558 405 1 2 818 2202 103 48 0 chr11 30643201 30643513 -91200343 - ORR1A2 LTR MaLR 0 327 1 2 818 1223 186 202 44 chr11 30643525 30643605 -91200251 - MTC LTR MaLR -3 418 317 2 818 3766 148 65 15 chr11 30643605 30644264 -91199592 - RLTR17 LTR ERVK 0 692 1 2 818 1223 186 202 44 chr11 30644264 30644423 -91199433 - MTC LTR MaLR -105 316 139 2 818 4296 109 63 12 chr11 30644423 30645103 -91198753 - RLTR19B LTR ERVK 0 715 1 2 818 1223 186 202 44 chr11 30645103 30645223 -91198633 - MTC LTR MaLR -283 138 2 2 818 1009 144 56 0 chr11 30645371 30645551 -91198305 + B2_Mm2 SINE B2 4 193 -2 2 818 651 172 8 25 chr11 30645610 30645729 -91198127 + MT2A LTR ERVL 2 118 -415 2 818 389 207 13 37 chr11 30645769 30645862 -91197994 - B1_Mur3 SINE Alu -2 118 39 2 818 315 256 82 37 chr11 30645874 30646008 -91197848 - RLTR19-int LTR ERVK -1770 4367 4228 2 818 1143 75 29 0 chr11 30646173 30646347 -91197509 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 818 249 33 0 0 chr11 30646347 30646377 -91197479 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 2 818 1313 67 0 11 chr11 30646379 30646561 -91197295 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 818 229 24 44 67 chr11 30646905 30646950 -91196906 + RMER4B LTR ERVK 14 57 -409 2 818 886 101 54 0 chr11 30646951 30647080 -91196776 + B1_Mus1 SINE Alu 1 136 -12 2 818 2594 157 121 4 chr11 30647091 30647577 -91196279 + RMER4B LTR ERVK 33 575 -10 2 818 679 238 118 90 chr11 30647628 30648062 -91195794 - RLTR19-int LTR ERVK -2274 3863 3418 2 818 21 36 0 0 chr11 30648308 30648336 -91195520 + AT_rich Low_complexity Low_complexity 1 28 0 2 818 1614 31 5 0 chr11 30648338 30648529 -91195327 + B2_Mm1t SINE B2 2 193 0 2 818 212 167 0 0 chr11 30648588 30648630 -91195226 + T-rich Low_complexity Low_complexity 2 43 0 2 818 349 230 108 84 chr11 30648703 30648869 -91194987 - RLTR19-int LTR ERVK -3064 3073 2904 2 818 701 310 107 29 chr11 30649683 30649730 -91194126 + BGLII_B LTR ERVK 1 46 -395 2 818 414 0 0 0 chr11 30649730 30649776 -91194080 + (CCCCCA)n Simple_repeat Simple_repeat 1 46 0 2 818 701 310 107 29 chr11 30649776 30650110 -91193746 + BGLII_B LTR ERVK 47 411 -30 2 818 2178 192 54 33 chr11 30650185 30650670 -91193186 - RMER20A LTR ERVK -11 505 11 2 818 414 0 0 0 chr11 30651239 30651285 -91192571 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 818 180 0 0 0 chr11 30651285 30651304 -91192552 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 818 303 28 0 0 chr11 30651304 30651339 -91192517 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 818 6036 154 108 50 chr11 30651345 30652708 -91191148 - RMER16-int LTR ERVK -3964 1442 1 2 818 988 197 132 75 chr11 30652708 30652763 -91191093 - RMER16 LTR ERVK 0 533 479 2 818 345 47 0 0 chr11 30652763 30652806 -91191050 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 818 988 197 132 75 chr11 30652806 30653068 -91190788 - RMER16 LTR ERVK -55 478 200 2 818 585 206 92 0 chr11 30653135 30653276 -91190580 + RLTR19-int LTR ERVK 4228 4381 -1756 2 818 314 239 131 71 chr11 30654031 30654229 -91189627 - MYSERV6-int LTR ERVK -1488 7471 7262 2 818 572 171 47 20 chr11 30654224 30654394 -91189462 - RLTR19-int LTR ERVK -3704 2433 2117 2 818 254 167 15 77 chr11 30655649 30655714 -91188142 - RLTR9A LTR ERVK -307 61 1 2 818 8758 274 28 22 chr11 30656277 30660824 -91183032 - ETnERV2-int LTR ERVK -1630 5776 542 2 818 4291 55 33 7 chr11 30660824 30661370 -91182486 - LTRIS2 LTR ERV1 0 564 5 2 818 3431 308 24 45 chr11 30661370 30661812 -91182044 - ETnERV2-int LTR ERVK -2773 541 47 2 818 1153 219 20 96 chr11 30661855 30662253 -91181603 - RLTR9A LTR ERVK 0 368 1 2 818 3343 234 46 3 chr11 30662253 30663144 -91180712 + MYSERV-int LTR ERVK 5562 6490 -60 2 818 1765 137 44 109 chr11 30663215 30663599 -91180257 + RLTR15 LTR ERVK 1 359 0 2 818 6490 128 64 16 chr11 30663599 30665118 -91178738 - L1_Mur2 LINE L1 -3469 2408 816 2 818 430 303 16 5 chr11 30665213 30665399 -91178457 - L1_Mur2 LINE L1 -6322 764 577 2 818 214 278 111 0 chr11 30665726 30665816 -91178040 - L2c LINE L2 0 3387 3288 2 818 680 257 40 11 chr11 30665821 30665998 -91177858 + B3A SINE B2 2 183 -15 2 818 499 291 118 27 chr11 30666049 30666236 -91177620 - B3 SINE B2 -8 208 5 2 818 378 0 0 0 chr11 30666236 30666278 -91177578 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 818 343 168 208 108 chr11 30666355 30666475 -91177381 - B1F2 SINE Alu -15 134 3 2 818 929 145 7 0 chr11 30666537 30666682 -91177174 - B1_Mus1 SINE Alu 0 148 3 2 818 553 308 79 45 chr11 30666868 30667045 -91176811 - B3A SINE B2 -14 184 2 2 818 356 100 37 12 chr11 30667056 30667137 -91176719 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 818 236 170 38 0 chr11 30667257 30667310 -91176546 + (TAAAG)n Simple_repeat Simple_repeat 2 56 0 2 818 2494 41 95 0 chr11 30667319 30667635 -91176221 + ORR1A1 LTR MaLR 1 346 0 2 818 596 248 63 0 chr11 30667683 30667875 -91175981 + Lx7 LINE L1 5523 5761 -1935 2 818 216 135 0 0 chr11 30668058 30668095 -91175761 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 818 258 232 0 35 chr11 30668327 30668385 -91175471 + B4 SINE B4 28 83 -209 3 818 235 327 95 36 chr11 30668724 30668892 -91174964 + RMER4A LTR ERVK 8 185 -281 3 818 975 225 31 110 chr11 30669047 30669366 -91174490 - RLTR11A LTR ERVK -225 303 10 3 818 3378 152 81 50 chr11 30669522 30669697 -91174159 - RLTR33 LTR ERVK 0 678 531 3 818 840 120 14 7 chr11 30669697 30669840 -91174016 - Lx LINE L1 0 6654 6511 3 818 3378 152 81 50 chr11 30669840 30670321 -91173535 - RLTR33 LTR ERVK -148 530 2 3 818 292 154 14 97 chr11 30670424 30670496 -91173360 + B1_Mur2 SINE Alu 84 149 0 3 818 248 97 40 53 chr11 30670500 30670576 -91173280 + A-rich Low_complexity Low_complexity 2 76 0 3 102 368 315 11 11 chr11 30670772 30670865 -91172991 - PB1D10 SINE Alu -20 97 5 3 819 257 280 7 40 chr11 30671864 30672013 -91171843 + G-rich Low_complexity Low_complexity 6 149 0 3 819 200 59 38 38 chr11 30672580 30672633 -91171223 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 3 819 230 0 33 0 chr11 30672691 30672721 -91171135 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 819 271 245 48 67 chr11 30674385 30674490 -91169366 - PB1D9 SINE Alu -17 103 1 3 819 277 123 67 180 chr11 30674493 30674582 -91169274 - PB1D10 SINE Alu -8 109 31 3 819 366 61 0 0 chr11 30674719 30674768 -91169088 + (TTA)n Simple_repeat Simple_repeat 2 50 0 3 819 390 293 55 31 chr11 30674771 30674898 -91168958 - RSINE1 SINE B4 -35 130 1 3 819 223 327 0 0 chr11 30675160 30675212 -91168644 - RSINE1 SINE B4 -78 87 36 3 819 225 0 0 0 chr11 30675809 30675834 -91168022 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 819 282 343 0 39 chr11 30676313 30676416 -91167440 - MTE2b LTR MaLR -33 346 248 3 819 189 0 0 0 chr11 30676664 30676685 -91167171 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 3 819 427 184 49 70 chr11 30676794 30676934 -91166922 - B3 SINE B2 -5 190 59 3 819 431 211 2 2 chr11 30676976 30677067 -91166789 + B3A SINE B2 45 137 -61 3 819 181 274 104 52 chr11 30677145 30677222 -91166634 - MIR3 SINE MIR -6 202 122 3 819 3534 184 83 14 chr11 30677364 30678234 -91165622 + RMER1A Other Other 9 1030 0 3 819 357 167 95 71 chr11 30678236 30678320 -91165536 + MT2B2 LTR ERVL 155 240 -344 3 819 652 200 92 0 chr11 30678245 30678375 -91165481 + B1_Mus2 SINE Alu 6 147 0 3 819 355 316 84 19 chr11 30678320 30678391 -91165465 + B4A SINE B4 82 246 -46 3 819 432 130 0 0 chr11 30678887 30678956 -91164900 + (T)n Simple_repeat Simple_repeat 1 69 0 3 819 1007 108 0 51 chr11 30678956 30679112 -91164744 - B1_Mus1 SINE Alu 0 148 1 3 819 496 215 76 180 chr11 30679246 30679563 -91164293 - B4A SINE B4 -7 285 2 3 819 397 269 42 25 chr11 30679570 30679688 -91164168 - PB1D7 SINE Alu 0 120 1 3 819 363 347 0 0 chr11 30680064 30680159 -91163697 + ID_B1 SINE B4 26 120 -104 3 819 435 213 16 136 chr11 30680328 30680453 -91163403 - PB1D10 SINE Alu -5 112 3 3 819 264 280 135 64 chr11 30680453 30680466 -91163390 - B4 SINE B4 -68 221 74 3 819 469 304 37 7 chr11 30680483 30680619 -91163237 - B1F SINE Alu -1 148 9 3 819 180 0 0 0 chr11 30680654 30680674 -91163182 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 819 288 301 48 12 chr11 30680711 30680795 -91163061 - RSINE1 SINE B4 -41 124 38 3 819 609 254 154 0 chr11 30681004 30681173 -91162683 + ID_B1 SINE B4 1 195 -29 3 819 423 85 0 35 chr11 30681209 30681294 -91162562 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 819 526 261 73 37 chr11 30681700 30681891 -91161965 - B3A SINE B2 0 198 1 3 819 238 218 26 222 chr11 30682087 30682240 -91161616 - B1F SINE Alu 0 149 27 3 819 590 297 76 0 chr11 30682149 30682334 -91161522 - ID_B1 SINE B4 -16 208 10 3 819 1549 164 83 7 chr11 30682449 30682749 -91161107 - RMER10A LTR ERVL 0 442 120 3 819 501 62 0 0 chr11 30682776 30682841 -91161015 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 3 819 1204 62 6 6 chr11 30682841 30683002 -91160854 - B2_Mm2 SINE B2 -34 161 1 3 819 2681 197 73 15 chr11 30683101 30683647 -91160209 - RLTR20A2 LTR ERVK 0 578 1 3 819 270 0 0 0 chr11 30683720 30683750 -91160106 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 819 4410 80 10 2 chr11 30683808 30684408 -91159448 - L1Md_F2 LINE L1 0 6582 5978 3 819 622 270 83 65 chr11 30684498 30684728 -91159128 - B4 SINE B4 -51 241 8 3 819 236 30 30 0 chr11 30684754 30684787 -91159069 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 819 4109 169 79 43 chr11 30685044 30685969 -91157887 - RMER17B LTR ERVK 0 958 1 3 819 727 200 57 0 chr11 30686554 30686694 -91157162 - B1_Mur3 SINE Alu 0 149 2 3 819 297 0 0 0 chr11 30687157 30687190 -91156666 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 3 819 471 147 0 0 chr11 30687194 30687269 -91156587 - B1_Mur2 SINE Alu 0 149 75 3 819 384 22 0 0 chr11 30687378 30687423 -91156433 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 819 259 216 59 0 chr11 30687554 30687605 -91156251 + B1_Mus2 SINE Alu 2 55 -92 3 819 315 248 117 29 chr11 30688046 30688183 -91155673 + RLTR42-int LTR ERVK 1643 1791 -3731 3 819 826 146 39 44 chr11 30688186 30688406 -91155450 - RMER17B LTR ERVK -2 464 311 3 819 1901 141 153 6 chr11 30688407 30688772 -91155084 - RMER4A LTR ERVK -47 419 1 3 819 378 200 65 24 chr11 30688805 30688928 -91154928 + RLTR19-int LTR ERVK 1021 1148 -4989 3 819 574 244 13 15 chr11 30688928 30689066 -91154790 + MTC-int LTR MaLR 467 590 -668 3 819 2040 155 101 76 chr11 30689256 30689772 -91154084 - RLTR24 LTR ERV1 0 529 1 3 819 1347 61 55 0 chr11 30689898 30690079 -91153777 + B2_Mm2 SINE B2 1 191 -4 3 819 560 153 0 12 chr11 30690113 30690199 -91153657 + B1_Mur1 SINE Alu 55 139 -10 3 819 427 273 78 0 chr11 30690314 30690442 -91153414 - B1F2 SINE Alu 0 149 12 3 819 291 358 91 19 chr11 30690319 30690473 -91153383 - ID_B1 SINE B4 -5 219 55 3 819 21 36 0 0 chr11 30690593 30690621 -91153235 + AT_rich Low_complexity Low_complexity 1 28 0 3 819 469 223 68 0 chr11 30690739 30690842 -91153014 - PB1D10 SINE Alu -6 111 2 3 819 21 71 0 0 chr11 30690881 30690923 -91152933 + AT_rich Low_complexity Low_complexity 1 42 0 3 819 306 0 0 0 chr11 30690950 30690984 -91152872 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 819 513 296 14 14 chr11 30691542 30691686 -91152170 + B3 SINE B2 67 210 -6 3 819 522 228 0 58 chr11 30692158 30692279 -91151577 - B1F2 SINE Alu -1 148 35 3 819 251 261 29 44 chr11 30692220 30692288 -91151568 - 4.5SRNA scRNA scRNA -6 88 22 3 819 710 255 69 30 chr11 30692492 30692694 -91151162 - B3 SINE B2 -1 215 6 3 819 799 201 7 0 chr11 30693284 30693433 -91150423 - B1_Mur4 SINE Alu 0 150 1 3 819 316 278 65 37 chr11 30693443 30693568 -91150288 - PB1D10 SINE Alu -7 142 9 3 819 252 321 63 84 chr11 30693568 30693586 -91150270 - ID_B1 SINE B4 -7 217 78 3 819 972 154 200 0 chr11 30694059 30694234 -91149622 + B3 SINE B2 2 211 -5 3 819 240 277 0 0 chr11 30694379 30694426 -91149430 + tRNA-Ala-GCY_ tRNA tRNA 21 67 -8 3 819 579 193 149 0 chr11 30694747 30694861 -91148995 + B1_Mur3 SINE Alu 1 131 -18 3 819 613 235 156 6 chr11 30694963 30695143 -91148713 + B3 SINE B2 2 208 -8 3 819 782 189 42 0 chr11 30695148 30695291 -91148565 + B1_Mur2 SINE Alu 1 149 0 3 819 518 138 63 11 chr11 30695521 30695616 -91148240 + B1_Mur2 SINE Alu 50 149 0 3 819 231 167 0 0 chr11 30695616 30695658 -91148198 + A-rich Low_complexity Low_complexity 4 45 0 3 819 256 293 11 68 chr11 30695675 30695763 -91148093 - PB1D10 SINE Alu -3 114 32 3 819 358 239 0 14 chr11 30695842 30695914 -91147942 - ID SINE ID -151 73 3 3 819 533 271 7 14 chr11 30695969 30696115 -91147741 + B1F SINE Alu 3 147 -2 3 819 260 286 0 0 chr11 30696188 30696237 -91147619 - B4A SINE B4 -164 128 80 3 819 186 43 0 0 chr11 30696238 30696261 -91147595 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 819 346 215 80 165 chr11 30696367 30696579 -91147277 + B3A SINE B2 5 198 0 3 819 227 288 68 0 chr11 30696610 30696627 -91147229 + ID4_ SINE ID 1 63 -20 3 819 257 191 0 0 chr11 30696627 30696669 -91147187 + tRNA-Ala-GCA tRNA tRNA 16 57 -18 3 819 264 206 105 40 chr11 30696739 30696815 -91147041 - B1_Mur4 SINE Alu -34 86 6 3 819 211 229 41 20 chr11 30697204 30697253 -91146603 + B4 SINE B4 83 132 -160 3 819 22 0 0 0 chr11 30697272 30697294 -91146562 + AT_rich Low_complexity Low_complexity 1 22 0 3 819 1612 32 21 0 chr11 30697868 30698057 -91145799 - B2_Mm1a SINE B2 0 193 1 3 819 728 196 35 7 chr11 30698204 30698348 -91145508 - B1_Mur2 SINE Alu 0 149 2 3 819 215 146 24 0 chr11 30698544 30698585 -91145271 + T-rich Low_complexity Low_complexity 2 43 0 3 819 284 208 12 105 chr11 30698585 30698671 -91145185 - PB1D7 SINE Alu 0 120 43 3 819 230 270 40 26 chr11 30698720 30698796 -91145060 - ID2 SINE ID -4 79 3 3 819 524 311 51 51 chr11 30699000 30699237 -91144619 - RLTR16 LTR ERVK -237 268 32 3 819 322 272 64 21 chr11 30699255 30699349 -91144507 - PB1D10 SINE Alu -19 98 1 4 819 472 240 224 1 chr11 30699598 30699741 -91144115 + B3A SINE B2 7 179 -37 4 819 926 185 112 6 chr11 30700250 30700429 -91143427 + B3 SINE B2 13 210 -6 4 819 23 0 0 0 chr11 30700439 30700462 -91143394 + AT_rich Low_complexity Low_complexity 1 23 0 4 819 204 211 140 0 chr11 30700905 30700962 -91142894 - MIRc SINE MIR -49 219 155 4 819 23 0 0 0 chr11 30703020 30703043 -91140813 + AT_rich Low_complexity Low_complexity 1 23 0 4 819 21 36 0 0 chr11 30703330 30703358 -91140498 + AT_rich Low_complexity Low_complexity 1 28 0 4 819 317 202 198 23 chr11 30703504 30703590 -91140266 - PB1D7 SINE Alu -10 110 10 4 819 267 182 91 0 chr11 30703541 30703596 -91140260 - ID_B1 SINE B4 -86 138 79 4 819 222 62 0 0 chr11 30703651 30703683 -91140173 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 819 180 256 188 25 chr11 30703722 30703802 -91140054 - MIR3 SINE MIR -7 201 109 4 819 220 235 59 0 chr11 30704121 30704172 -91139684 - ID4 SINE ID 0 83 30 4 819 183 333 0 34 chr11 30704428 30704487 -91139369 - L2 LINE L2 -375 3044 2988 4 819 324 286 33 11 chr11 30705671 30705763 -91138093 - B3A SINE B2 -104 94 1 4 819 443 250 26 9 chr11 30706066 30706179 -91137677 + PB1D10 SINE Alu 1 115 -2 4 819 1238 97 11 11 chr11 30706642 30706820 -91137036 + B2_Mm1t SINE B2 2 179 -14 4 819 342 80 336 18 chr11 30706867 30706980 -91136876 + B2_Mm2 SINE B2 47 195 0 4 819 204 197 0 70 chr11 30707930 30708001 -91135855 + CT-rich Low_complexity Low_complexity 3 68 0 4 819 196 172 17 17 chr11 30708001 30708060 -91135796 + C-rich Low_complexity Low_complexity 4 62 0 4 819 209 57 29 0 chr11 30708422 30708457 -91135399 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 819 1077 38 15 0 chr11 30708457 30708589 -91135267 - B1_Mus2 SINE Alu -13 134 1 4 819 549 0 0 0 chr11 30708805 30708866 -91134990 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 819 289 320 75 67 chr11 30708881 30709015 -91134841 - B1F2 SINE Alu -10 139 5 4 819 32 43 0 0 chr11 30709147 30709193 -91134663 + AT_rich Low_complexity Low_complexity 1 46 0 4 819 427 294 52 0 chr11 30709316 30709469 -91134387 - RSINE1 SINE B4 -4 161 1 4 819 318 148 0 0 chr11 30710070 30710124 -91133732 + (CATA)n Simple_repeat Simple_repeat 4 57 0 4 819 583 275 22 0 chr11 30710323 30710461 -91133395 - B1F2 SINE Alu -8 141 1 4 819 375 309 54 9 chr11 30710489 30710600 -91133256 + PB1D10 SINE Alu 2 117 0 4 819 498 252 26 18 chr11 30711059 30711172 -91132684 + B3 SINE B2 96 209 -7 4 819 517 275 82 66 chr11 30711278 30711461 -91132395 + B4A SINE B4 48 233 -59 4 819 457 277 68 81 chr11 30711457 30711618 -91132238 + ID_B1 SINE B4 7 165 -59 4 819 265 290 73 83 chr11 30711544 30711653 -91132203 + PB1D7 SINE Alu 12 119 -1 4 819 383 283 104 0 chr11 30712474 30712580 -91131276 + PB1D10 SINE Alu 1 117 0 4 819 849 96 0 48 chr11 30712689 30712876 -91130980 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 819 777 128 0 48 chr11 30712916 30713105 -91130751 + CT-rich Low_complexity Low_complexity 1 180 0 4 819 208 107 0 0 chr11 30713105 30713133 -91130723 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 4 819 183 28 0 77 chr11 30713133 30713172 -91130684 + (TTC)n Simple_repeat Simple_repeat 2 37 0 4 819 319 306 69 39 chr11 30713899 30714001 -91129855 + PB1D10 SINE Alu 6 110 -7 4 819 561 329 0 32 chr11 30714475 30714632 -91129224 + RSINE1 SINE B4 6 157 -8 4 819 256 348 78 48 chr11 30714767 30714933 -91128923 - MER20 DNA MER1_type -14 205 35 4 819 339 273 161 7 chr11 30716014 30716169 -91127687 - MER82 DNA MER2_type -303 350 172 4 819 707 215 21 0 chr11 30716582 30716726 -91127130 - B1_Mm SINE Alu 0 147 1 4 819 452 323 10 41 chr11 30716726 30716779 -91127077 - ID_B1 SINE B4 -2 222 32 4 819 236 100 25 0 chr11 30716794 30716834 -91127022 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 4 819 337 284 48 41 chr11 30717017 30717164 -91126692 - B1F SINE Alu 0 149 2 4 819 258 371 119 0 chr11 30717410 30717553 -91126303 - RSINE1 SINE B4 -4 161 2 4 819 355 216 135 11 chr11 30718292 30718381 -91125475 - PB1D9 SINE Alu -7 113 14 4 819 199 175 0 34 chr11 30718543 30718562 -91125294 + polypyrimidine Low_complexity Low_complexity 42 60 0 4 819 459 0 0 0 chr11 30718562 30718613 -91125243 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 819 199 175 0 34 chr11 30718613 30718652 -91125204 + CT-rich Low_complexity Low_complexity 4 41 0 4 819 222 118 0 0 chr11 30718659 30718693 -91125163 + (TCTCC)n Simple_repeat Simple_repeat 2 35 0 4 819 574 225 58 8 chr11 30718710 30718831 -91125025 - B1_Mus1 SINE Alu -18 130 4 4 819 362 315 37 9 chr11 30719197 30719306 -91124550 - PB1D7 SINE Alu -2 118 7 4 819 217 309 0 42 chr11 30719243 30719314 -91124542 - B4A SINE B4 -140 152 85 4 819 419 287 0 25 chr11 30719447 30719565 -91124291 - PB1D9 SINE Alu 0 120 6 4 819 243 325 39 47 chr11 30720234 30720363 -91123493 - MER97c DNA MER1_type? -562 528 401 4 819 714 272 47 0 chr11 30720273 30720442 -91123414 - B3 SINE B2 -39 177 1 4 819 310 261 0 0 chr11 30720542 30720611 -91123245 - PB1D10 SINE Alu -21 96 28 4 819 604 222 69 7 chr11 30721181 30721326 -91122530 - B3 SINE B2 -5 211 58 4 819 308 254 44 26 chr11 30724525 30724638 -91119218 - PB1D7 SINE Alu -1 119 5 4 819 285 309 43 0 chr11 30724683 30724780 -91119076 + PB1D10 SINE Alu 1 110 -10 4 819 523 188 0 125 chr11 30725350 30725478 -91118378 - B3 SINE B2 -88 128 17 4 819 777 246 132 40 chr11 30728306 30728556 -91115300 - B4A SINE B4 0 292 20 4 819 193 0 94 0 chr11 30728575 30728607 -91115249 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 4 819 415 211 50 129 chr11 30729670 30729830 -91114026 - B1F SINE Alu 0 147 1 4 819 21 36 0 0 chr11 30729999 30730027 -91113829 + AT_rich Low_complexity Low_complexity 1 28 0 4 819 362 237 26 0 chr11 30730585 30730661 -91113195 - PB1D9 SINE Alu -1 119 42 4 819 26 0 0 0 chr11 30730783 30730809 -91113047 + AT_rich Low_complexity Low_complexity 1 26 0 4 819 507 217 41 57 chr11 30730848 30730970 -91112886 - RSINE1 SINE B4 -42 123 4 4 819 288 292 14 0 chr11 30731196 30731268 -91112588 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 4 819 797 229 126 0 chr11 30731480 30731663 -91112193 - B3 SINE B2 -4 212 7 4 819 316 224 100 27 chr11 30731700 30731810 -91112046 - PB1D7 SINE Alu 0 120 3 4 819 284 291 93 0 chr11 30731839 30731925 -91111931 - PB1D10 SINE Alu -9 108 15 4 819 29 47 0 0 chr11 30732801 30732844 -91111012 + AT_rich Low_complexity Low_complexity 1 43 0 4 819 247 231 0 0 chr11 30732916 30732955 -91110901 + ID4_ SINE ID 25 63 -20 4 819 21 0 0 0 chr11 30733054 30733075 -91110781 + AT_rich Low_complexity Low_complexity 1 21 0 4 819 28 0 0 0 chr11 30733640 30733668 -91110188 + AT_rich Low_complexity Low_complexity 1 28 0 4 819 452 292 54 0 chr11 30733668 30733815 -91110041 - RSINE1 SINE B4 -8 157 3 4 819 441 212 141 0 chr11 30733888 30733987 -91109869 - PB1D9 SINE Alu -7 113 1 4 819 397 162 13 26 chr11 30734620 30734696 -91109160 - B1_Mur3 SINE Alu -6 143 69 4 819 271 198 318 23 chr11 30734735 30734823 -91109033 - PB1D10 SINE Alu -3 114 1 4 819 314 230 40 0 chr11 30735904 30735978 -91107878 + PB1 SINE Alu 49 125 -2 4 819 227 175 15 60 chr11 30736620 30736687 -91107169 - Lx8 LINE L1 0 7473 7410 4 819 1123 49 14 7 chr11 30736791 30736936 -91106920 + B1_Mur4 SINE Alu 1 146 -4 4 819 375 253 147 0 chr11 30737787 30737882 -91105974 - B1_Mm SINE Alu -34 113 5 4 819 477 251 1 7 chr11 30738042 30738171 -91105685 - B1F SINE Alu -12 137 11 4 819 289 319 101 22 chr11 30738082 30738220 -91105636 - ID_B1 SINE B4 -108 184 36 4 819 418 247 32 0 chr11 30738385 30738478 -91105378 - PB1D10 SINE Alu -19 98 3 4 819 21 36 0 0 chr11 30738486 30738514 -91105342 + AT_rich Low_complexity Low_complexity 1 28 0 4 819 510 295 14 79 chr11 30738670 30738810 -91105046 - RSINE1 SINE B4 0 165 35 4 819 21 0 0 0 chr11 30739372 30739393 -91104463 + AT_rich Low_complexity Low_complexity 1 21 0 4 819 271 246 16 0 chr11 30739519 30739580 -91104276 - PB1 SINE Alu -27 100 39 4 819 272 324 57 38 chr11 30739770 30739876 -91103980 + PB1D10 SINE Alu 10 117 0 4 819 198 128 0 0 chr11 30739876 30739915 -91103941 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 4 819 5012 78 22 31 chr11 30739934 30740166 -91103690 - MusHAL1 LINE L1 -1278 1434 1212 4 819 4118 77 0 0 chr11 30740166 30740702 -91103154 + L1Md_T LINE L1 6047 6582 0 4 819 5012 78 22 31 chr11 30740702 30741235 -91102621 - MusHAL1 LINE L1 -1501 1211 676 4 819 793 198 33 38 chr11 30741230 30741414 -91102442 + Lx LINE L1 6466 6648 -6 4 819 215 358 100 50 chr11 30741844 30741944 -91101912 + B1F1 SINE Alu 1 105 -44 4 819 234 0 0 0 chr11 30742660 30742686 -91101170 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 819 430 295 15 44 chr11 30742689 30742824 -91101032 - RSINE1 SINE B4 -24 141 11 4 819 642 284 198 3 chr11 30743036 30743396 -91100460 - Lx9 LINE L1 -1729 5915 5483 5 819 198 91 0 0 chr11 30743810 30743843 -91100013 + (TATG)n Simple_repeat Simple_repeat 2 34 0 5 819 951 67 7 36 chr11 30743848 30743987 -91099869 - B1_Mus1 SINE Alu 0 148 14 5 819 413 339 62 38 chr11 30744049 30744340 -91099516 + L1MC4 LINE L1 7676 7973 -69 5 819 466 338 70 7 chr11 30744584 30744727 -91099129 - RSINE1 SINE B4 -2 163 12 5 819 401 329 104 0 chr11 30744793 30744957 -91098899 + B3A SINE B2 2 182 -16 5 819 470 215 32 0 chr11 30745005 30745098 -91098758 + PB1D9 SINE Alu 5 100 -20 5 819 218 161 102 51 chr11 30746308 30746367 -91097489 - B3A SINE B2 -121 77 16 5 819 1130 162 164 20 chr11 30746615 30746897 -91096959 + Lx5 LINE L1 6626 6929 -121 5 819 959 126 84 0 chr11 30747835 30748002 -91095854 + B2_Mm2 SINE B2 1 181 -14 5 819 614 282 93 12 chr11 30748448 30748620 -91095236 + ID_B1 SINE B4 20 205 -19 5 819 225 94 0 0 chr11 30748640 30748672 -91095184 + (T)n Simple_repeat Simple_repeat 1 32 0 5 819 3448 91 4 31 chr11 30748694 30749064 -91094792 - RLTR19C LTR ERVK -7 499 135 5 819 1156 55 0 0 chr11 30749064 30749209 -91094647 + B1_Mus2 SINE Alu 1 145 -2 5 819 339 25 0 0 chr11 30749209 30749249 -91094607 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 819 3448 91 4 31 chr11 30749249 30749390 -91094466 - RLTR19C LTR ERVK -372 134 2 5 819 479 260 108 40 chr11 30749502 30749678 -91094178 + B3A SINE B2 5 192 -6 5 819 475 187 210 8 chr11 30749697 30749821 -91094035 - B1_Mur1 SINE Alu 0 149 1 5 819 333 292 66 0 chr11 30750059 30750165 -91093691 + MER5A1 DNA MER1_type 52 164 -2 5 819 530 264 28 14 chr11 30751311 30751453 -91092403 + B1F1 SINE Alu 6 149 0 5 819 21 0 0 0 chr11 30751779 30751800 -91092056 + AT_rich Low_complexity Low_complexity 1 21 0 5 819 1108 75 0 20 chr11 30751803 30751953 -91091903 + B1_Mus1 SINE Alu 2 148 0 5 819 554 58 314 9 chr11 30751988 30752093 -91091763 + B2_Mm2 SINE B2 45 181 -14 5 819 382 328 26 93 chr11 30752167 30752318 -91091538 + RSINE1 SINE B4 17 157 -8 5 819 270 0 0 0 chr11 30753459 30753489 -91090367 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 819 216 0 0 0 chr11 30753557 30753581 -91090275 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 819 573 196 0 53 chr11 30753583 30753696 -91090160 - B1_Mur2 SINE Alu -8 141 35 5 819 259 296 136 25 chr11 30753599 30753717 -91090139 - B4 SINE B4 -80 212 82 5 819 517 276 122 16 chr11 30753818 30754072 -91089784 - L1MB4 LINE L1 -40 6140 5860 5 819 1158 179 249 10 chr11 30754080 30754373 -91089483 - ORR1C1 LTR MaLR -15 363 1 5 819 259 278 0 0 chr11 30754402 30754492 -91089364 - L1MB4 LINE L1 -391 5783 5694 5 819 483 196 139 9 chr11 30754500 30754608 -91089248 - B1_Mur2 SINE Alu -2 147 26 5 819 275 197 45 15 chr11 30754623 30754690 -91089166 - L1MB4 LINE L1 -479 5701 5633 5 819 423 191 90 9 chr11 30754819 30754930 -91088926 - L1MB4 LINE L1 -713 5465 5346 5 819 333 291 101 7 chr11 30755029 30755178 -91088678 - L1M2 LINE L1 -808 5335 5173 5 819 234 0 0 0 chr11 30755219 30755245 -91088611 + (GTTTG)n Simple_repeat Simple_repeat 4 29 0 5 819 305 24 0 23 chr11 30755340 30755383 -91088473 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 5 819 503 297 127 12 chr11 30755397 30755728 -91088128 - L1MB4 LINE L1 -1115 5031 4663 5 819 189 0 0 0 chr11 30755736 30755757 -91088099 + (T)n Simple_repeat Simple_repeat 1 21 0 5 819 27 62 0 0 chr11 30756413 30756461 -91087395 + AT_rich Low_complexity Low_complexity 1 48 0 5 819 1829 174 73 46 chr11 30756465 30756833 -91087023 - ORR1C1 LTR MaLR 0 378 1 5 819 716 243 0 0 chr11 30756870 30757006 -91086850 - ID_B1 SINE B4 -1 223 88 5 819 207 139 0 0 chr11 30757164 30757200 -91086656 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 819 183 310 55 27 chr11 30757298 30757371 -91086485 + MIR SINE MIR 124 198 -64 5 819 359 346 67 29 chr11 30757770 30757874 -91085982 + RSINE1 SINE B4 15 122 -43 5 819 399 250 48 9 chr11 30757944 30758049 -91085807 + PB1D10 SINE Alu 2 110 -7 5 819 617 260 142 33 chr11 30758159 30758342 -91085514 - B3 SINE B2 -11 205 3 5 819 271 294 38 38 chr11 30758836 30758967 -91084889 - L1MD2 LINE L1 -30 6329 6199 5 819 846 92 108 0 chr11 30759067 30759197 -91084659 - B2_Mm2 SINE B2 -7 188 45 5 819 736 188 0 23 chr11 30759271 30759402 -91084454 - B1_Mur3 SINE Alu -13 136 9 5 819 398 259 48 100 chr11 30759284 30759305 -91084551 - MT2B LTR ERVL -322 279 193 5 819 479 221 9 37 chr11 30759305 30759413 -91084443 - PB1D7 SINE Alu -15 105 1 5 819 805 199 127 16 chr11 30759419 30759608 -91084248 - B3 SINE B2 -6 210 1 5 819 398 259 48 100 chr11 30759608 30759642 -91084214 - MT2B LTR ERVL -443 158 121 5 819 499 217 196 30 chr11 30759642 30759775 -91084081 + RSINE1 SINE B4 2 156 -9 5 819 369 238 95 0 chr11 30760654 30760738 -91083118 - B1_Mur1 SINE Alu -2 147 56 5 819 1191 48 0 0 chr11 30760953 30761100 -91082756 + B1_Mus2 SINE Alu 1 147 0 5 819 261 217 99 2 chr11 30761219 30761297 -91082559 - B1F1 SINE Alu -8 141 27 5 819 675 215 15 0 chr11 30761523 30761653 -91082203 - B1_Mur1 SINE Alu 0 149 18 5 819 454 311 30 30 chr11 30761653 30761689 -91082167 - ID_B1 SINE B4 0 224 59 5 819 3515 159 70 28 chr11 30761796 30762521 -91081335 - RMER6A LTR ERVK 0 756 1 5 819 325 264 52 78 chr11 30763100 30763215 -91080641 + MIRb SINE MIR 27 138 -130 5 819 353 211 45 27 chr11 30763551 30763663 -91080193 - Lx9 LINE L1 0 7644 7531 5 819 1783 260 61 33 chr11 30763894 30764415 -91079441 - Lx7 LINE L1 -458 7238 6703 5 819 2089 260 72 28 chr11 30764443 30765126 -91078730 + Lx7 LINE L1 5993 6681 -1015 5 819 300 210 0 46 chr11 30765642 30765707 -91078149 + PB1D7 SINE Alu 39 100 -48 5 819 4695 187 57 81 chr11 30765911 30766960 -91076896 - Lx6 LINE L1 -4 7456 6433 5 819 488 16 16 0 chr11 30767101 30767162 -91076694 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 5 819 441 198 135 29 chr11 30767945 30768049 -91075807 + PB1D9 SINE Alu 1 115 -5 5 819 386 277 53 0 chr11 30768057 30768151 -91075705 + RSINE1 SINE B4 4 102 -63 5 819 627 0 0 0 chr11 30768222 30768294 -91075562 - ORR1A1 LTR MaLR 0 346 275 5 819 10088 57 1 0 chr11 30768294 30769569 -91074287 + L1Md_F2 LINE L1 4311 5586 -297 5 819 8058 48 1 0 chr11 30769569 30770551 -91073305 + L1Md_F2 LINE L1 5587 6569 -13 5 819 2274 42 0 0 chr11 30770552 30770837 -91073019 - ORR1A1 LTR MaLR -61 285 1 5 819 399 222 316 28 chr11 30770892 30771107 -91072749 + B4A SINE B4 6 282 -10 5 819 717 12 0 0 chr11 30771572 30771654 -91072202 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 819 1141 75 0 0 chr11 30771771 30771918 -91071938 - B1_Mus1 SINE Alu 0 148 2 5 819 2823 86 31 0 chr11 30771919 30772304 -91071552 - MTB LTR MaLR -3 397 1 5 819 494 255 9 0 chr11 30772485 30772591 -91071265 + PB1D10 SINE Alu 5 111 -6 5 819 405 0 0 0 chr11 30772750 30772795 -91071061 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 819 405 0 0 0 chr11 30772795 30772839 -91071017 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 819 279 54 0 0 chr11 30772839 30772875 -91070981 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 819 341 299 15 29 chr11 30773402 30773544 -91070312 + PB1D10 SINE Alu 10 149 0 5 819 234 299 0 72 chr11 30773544 30773627 -91070229 + ID4_ SINE ID 2 78 -5 5 819 211 238 0 45 chr11 30773627 30773671 -91070185 + PB1 SINE Alu 83 124 -3 5 819 278 290 16 0 chr11 30773683 30773745 -91070111 + ID4_ SINE ID 16 78 -5 5 819 22 35 0 0 chr11 30773830 30773859 -91069997 + AT_rich Low_complexity Low_complexity 1 29 0 5 819 180 0 0 0 chr11 30774501 30774521 -91069335 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 819 418 342 52 7 chr11 30774639 30774792 -91069064 + RSINE1 SINE B4 6 165 0 5 819 495 48 0 0 chr11 30774811 30774873 -91068983 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 819 583 280 49 0 chr11 30774899 30775042 -91068814 + B4 SINE B4 2 151 -141 5 819 273 355 18 45 chr11 30775126 30775238 -91068618 + B3A SINE B2 88 196 -2 5 819 309 284 54 0 chr11 30775256 30775330 -91068526 + B4 SINE B4 213 290 -2 5 819 244 329 25 25 chr11 30776068 30776149 -91067707 + ID4_ SINE ID 1 81 -2 5 819 816 70 0 50 chr11 30777603 30777723 -91066133 - B1_Mm SINE Alu 0 147 34 5 819 396 205 48 0 chr11 30777721 30777804 -91066052 + PB1D9 SINE Alu 34 120 0 5 819 279 79 0 0 chr11 30778110 30778148 -91065708 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 819 27 29 0 0 chr11 30778206 30778240 -91065616 + AT_rich Low_complexity Low_complexity 1 34 0 5 819 447 301 9 0 chr11 30778642 30778755 -91065101 - PB1D10 SINE Alu 0 117 4 5 819 223 387 35 26 chr11 30778777 30778891 -91064965 + ID_B1 SINE B4 1 115 -109 5 819 519 216 239 13 chr11 30779138 30779297 -91064559 - B3 SINE B2 -14 202 8 5 819 512 229 58 91 chr11 30779344 30779498 -91064358 - B1_Mur1 SINE Alu 0 149 1 5 819 331 184 23 0 chr11 30780464 30780551 -91063305 + CT-rich Low_complexity Low_complexity 6 94 0 5 819 337 346 29 0 chr11 30781306 30781410 -91062446 - MER3 DNA MER1_type -90 119 13 5 819 665 191 30 15 chr11 30781426 30781559 -91062297 + B1_Mus1 SINE Alu 6 140 -8 5 819 216 171 0 0 chr11 30781641 30781676 -91062180 + T-rich Low_complexity Low_complexity 2 36 0 5 819 390 57 0 0 chr11 30781677 30781730 -91062126 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 5 819 1136 95 0 6 chr11 30781730 30781899 -91061957 + (TTTCC)n Simple_repeat Simple_repeat 2 169 0 5 819 199 104 20 20 chr11 30782109 30782158 -91061698 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 5 819 6500 43 3 0 chr11 30782224 30782952 -91060904 - L1Md_F2 LINE L1 -15 6567 5838 5 819 1159 83 7 7 chr11 30783341 30783475 -91060381 + B1_Mus2 SINE Alu 2 136 -11 6 819 200 35 35 0 chr11 30783475 30783504 -91060352 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 819 1159 83 7 7 chr11 30783504 30783515 -91060341 + B1_Mus2 SINE Alu 137 147 0 6 819 229 143 0 0 chr11 30785971 30786006 -91057850 + MIR SINE MIR 86 120 -142 6 819 225 0 0 0 chr11 30786067 30786092 -91057764 + (A)n Simple_repeat Simple_repeat 1 25 0 6 819 319 170 225 11 chr11 30786197 30786286 -91057570 - Lx5 LINE L1 -291 6709 6599 6 819 232 254 14 14 chr11 30786330 30786402 -91057454 + CT-rich Low_complexity Low_complexity 4 75 0 6 819 238 247 147 27 chr11 30786402 30786477 -91057379 - B1F2 SINE Alu -65 84 1 6 819 742 182 16 8 chr11 30786494 30786621 -91057235 - B1_Mur1 SINE Alu -1 148 21 6 819 251 273 87 87 chr11 30786731 30786846 -91057010 - PB1 SINE Alu -8 141 1 6 819 1892 190 99 0 chr11 30787011 30787385 -91056471 - MTD LTR MaLR -8 411 1 6 819 918 177 7 20 chr11 30787659 30787809 -91056047 - B1_Mur3 SINE Alu -1 148 1 6 819 275 277 15 15 chr11 30788308 30788374 -91055482 - ID4_ SINE ID -13 70 5 6 819 455 174 32 11 chr11 30788357 30788450 -91055406 - PB1D10 SINE Alu -22 95 1 6 819 38 22 0 0 chr11 30788777 30788822 -91055034 + AT_rich Low_complexity Low_complexity 1 45 0 6 819 2310 28 0 0 chr11 30788822 30789077 -91054779 - L1Md_F2 LINE L1 -13 6569 6315 6 819 1594 72 5 0 chr11 30789079 30789287 -91054569 - L1Md_F2 LINE L1 0 6582 6374 6 819 226 261 0 0 chr11 30790112 30790158 -91053698 - B2_Mm2 SINE B2 -148 47 2 6 819 366 23 0 0 chr11 30790168 30790211 -91053645 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 819 249 83 0 0 chr11 30790211 30790247 -91053609 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 819 219 36 0 0 chr11 30790957 30790985 -91052871 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 819 2935 194 33 6 chr11 30793043 30793560 -91050296 - Lx5 LINE L1 0 7050 6520 6 819 379 259 25 0 chr11 30794278 30794359 -91049497 - ID4_ SINE ID 0 83 1 6 819 465 196 510 0 chr11 30795168 30795311 -91048545 + B3 SINE B2 1 216 0 6 819 1243 68 7 0 chr11 30795371 30795517 -91048339 - B1_Mus2 SINE Alu 0 147 1 6 819 358 295 56 19 chr11 30796138 30796245 -91047611 - PB1D10 SINE Alu 0 117 7 6 819 258 253 53 16 chr11 30796262 30796356 -91047500 - B1_Mus1 SINE Alu -8 112 19 6 819 1987 152 24 3 chr11 30796357 30796688 -91047168 + ORR1B2 LTR MaLR 1 338 -29 6 819 280 277 77 0 chr11 30796718 30796783 -91047073 - ID4_ SINE ID -7 76 7 6 819 255 232 34 51 chr11 30796929 30796988 -91046868 - ID4 SINE ID -16 67 10 6 819 504 0 0 0 chr11 30796990 30797046 -91046810 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 819 369 0 0 0 chr11 30797047 30797088 -91046768 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 819 257 268 52 104 chr11 30797236 30797332 -91046524 - PB1 SINE Alu -36 91 1 6 819 627 281 33 0 chr11 30797552 30797705 -91046151 - MTEa LTR MaLR -201 178 21 6 819 255 314 14 0 chr11 30798143 30798213 -91045643 + ID4 SINE ID 2 72 -11 6 819 492 18 0 0 chr11 30798215 30798272 -91045584 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 819 291 149 40 0 chr11 30798637 30798711 -91045145 + GA-rich Low_complexity Low_complexity 2 78 0 6 819 427 266 124 8 chr11 30798789 30798918 -91044938 - B1F1 SINE Alu -4 145 2 6 819 522 248 75 7 chr11 30799470 30799616 -91044240 + RSINE1 SINE B4 3 158 -7 6 819 838 196 7 13 chr11 30800150 30800300 -91043556 - B1_Mur4 SINE Alu -1 149 1 6 102 21254 165 61 25 chr11 30800434 30802426 -91041430 - Lx5 LINE L1 0 7050 4993 6 820 1333 41 0 0 chr11 30802426 30802573 -91041283 + B1_Mm SINE Alu 1 147 0 6 820 21254 148 69 39 chr11 30802573 30803212 -91040644 - Lx5 LINE L1 -885 4992 4368 6 820 261 0 0 0 chr11 30803212 30803241 -91040615 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 820 21254 148 69 39 chr11 30803241 30804389 -91039467 - Lx5 LINE L1 -1510 4367 3153 6 820 3602 153 81 0 chr11 30804389 30804930 -91038926 - Lx4A LINE L1 -4 7054 6470 6 820 21254 148 69 39 chr11 30804930 30805737 -91038119 - Lx5 LINE L1 -2725 3152 2294 6 820 1182 68 7 20 chr11 30805737 30805887 -91037969 - B1_Mus1 SINE Alu 0 148 1 6 820 21254 148 69 39 chr11 30805887 30806533 -91037323 - Lx5 LINE L1 -3584 2293 1645 6 820 513 121 0 0 chr11 30806536 30806619 -91037237 + (TC)n Simple_repeat Simple_repeat 1 83 0 6 820 2203 146 31 43 chr11 30807975 30808734 -91035122 - Lx5 LINE L1 -4227 1650 896 6 820 226 260 167 48 chr11 30809028 30809124 -91034732 - MLT1B LTR MaLR -179 211 111 6 820 4666 187 45 6 chr11 30809124 30809180 -91034676 + Lx5 LINE L1 6226 6285 -765 6 820 351 0 0 0 chr11 30809180 30809219 -91034637 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 820 4666 187 45 6 chr11 30809219 30809953 -91033903 + Lx5 LINE L1 6286 7046 -4 6 820 226 260 167 48 chr11 30809953 30810042 -91033814 - MLT1B LTR MaLR -280 110 5 6 820 24 0 0 0 chr11 30810069 30810093 -91033763 + AT_rich Low_complexity Low_complexity 1 24 0 6 820 493 326 0 0 chr11 30810176 30810308 -91033548 - B1F SINE Alu -5 144 13 6 820 344 364 25 38 chr11 30810308 30810332 -91033524 - ID_B1 SINE B4 -1 219 66 6 820 1187 264 126 62 chr11 30810500 30811046 -91032810 - RMER13A LTR ERVK -279 581 1 6 820 384 299 101 17 chr11 30811110 30811229 -91032627 + B1F SINE Alu 1 129 -20 6 820 2134 125 19 122 chr11 30811278 30811696 -91032160 + ORR1C1 LTR MaLR 1 375 -3 6 820 4759 228 73 30 chr11 30811726 30812973 -91030883 + ORR1C1-int LTR MaLR 100 1555 -25 6 820 2893 152 66 11 chr11 30812990 30813462 -91030394 - RLTR19 LTR ERVK 0 499 2 6 820 1946 179 78 0 chr11 30813488 30813846 -91030010 + MTC LTR MaLR 36 421 0 6 820 1125 176 127 0 chr11 30813966 30814211 -91029645 - L1_Mur2 LINE L1 -3751 2126 1851 6 820 2366 112 0 0 chr11 30814195 30814516 -91029340 - L1_Mm LINE L1 -35 5848 5528 6 820 6486 52 4 8 chr11 30814516 30815285 -91028571 + L1_Mus1 LINE L1 5802 6567 0 6 820 2974 181 19 42 chr11 30815324 30815786 -91028070 - L1_Mur2 LINE L1 -4006 1871 1420 6 820 1271 68 0 0 chr11 30815786 30815934 -91027922 - B1_Mus1 SINE Alu 0 148 1 6 820 2974 176 64 28 chr11 30815934 30816233 -91027623 - L1_Mur2 LINE L1 -4458 1419 1056 6 820 4901 69 3 12 chr11 30816344 30816944 -91026912 - L1_Mus2 LINE L1 0 6566 5972 6 820 1388 226 90 14 chr11 30817002 30817123 -91026733 + RLTR19 LTR ERVK 1 170 -329 6 820 378 107 0 0 chr11 30817123 30817179 -91026677 + (TTA)n Simple_repeat Simple_repeat 2 57 0 6 820 1388 252 106 26 chr11 30817179 30817487 -91026369 + RLTR19 LTR ERVK 171 498 -1 6 820 749 181 57 57 chr11 30817505 30817698 -91026158 + MERVL_2A-int LTR ERVL 5562 5754 -7 6 820 442 257 0 9 chr11 30817710 30817820 -91026036 + MT2A LTR ERVL 3 111 -422 6 820 673 272 14 0 chr11 30818290 30818437 -91025419 - B3A SINE B2 -49 149 1 6 820 804 270 19 5 chr11 30818462 30818674 -91025182 - RMER5 LTR ERV1 0 534 320 6 820 659 148 0 0 chr11 30819031 30819139 -91024717 + RLTR14 LTR ERV1 68 175 -207 6 820 4826 94 3 11 chr11 30819148 30819793 -91024063 - L1_Mus4 LINE L1 0 6636 5997 6 820 3238 62 17 0 chr11 30819793 30820197 -91023659 + L1_Mus4 LINE L1 5603 6013 -623 6 820 1282 134 20 5 chr11 30820197 30820400 -91023456 + RLTR14 LTR ERV1 155 360 -22 6 820 659 271 74 25 chr11 30820403 30820728 -91023128 + RLTR15 LTR ERVK 3 343 -16 6 820 228 140 368 0 chr11 30820802 30820859 -91022997 - B1_Mur1 SINE Alu -9 140 34 6 820 900 279 157 21 chr11 30821081 30821469 -91022387 + RLTR28B LTR ERVL 3 443 -38 6 820 394 292 116 62 chr11 30821495 30821610 -91022246 + RSINE1 SINE B4 12 140 -25 6 820 4174 84 62 5 chr11 30821610 30822163 -91021693 - MT2B2 LTR ERVL 0 584 1 6 820 394 292 116 62 chr11 30822163 30822193 -91021663 + RSINE1 SINE B4 141 165 0 6 820 2469 192 50 29 chr11 30822523 30823047 -91020809 - RMER1C Other Other 0 1342 808 6 820 355 340 0 0 chr11 30823102 30823205 -91020651 - RMER1C Other Other -1211 131 29 6 820 344 314 20 0 chr11 30823730 30823832 -91020024 - B3A SINE B2 -19 179 76 6 820 297 234 9 113 chr11 30823873 30823979 -91019877 + MT2A LTR ERVL 153 247 -354 6 820 634 221 32 16 chr11 30823885 30824009 -91019847 + B1_Mur4 SINE Alu 2 127 -23 6 820 207 88 0 0 chr11 30824019 30824053 -91019803 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 6 820 323 136 68 0 chr11 30824065 30824124 -91019732 + MTC-int LTR MaLR 989 1051 -207 6 820 8860 108 70 1 chr11 30824136 30825614 -91018242 - Lx2 LINE L1 -1 6996 5418 6 820 639 168 116 71 chr11 30825614 30825800 -91018056 + MTC-int LTR MaLR 1024 1221 -37 6 820 2001 163 58 21 chr11 30825800 30826176 -91017680 - ORR1B1 LTR MaLR 0 394 5 6 820 639 168 116 71 chr11 30826176 30826214 -91017642 + MTC-int LTR MaLR 1222 1258 0 6 820 838 172 92 7 chr11 30826214 30826366 -91017490 + MTC LTR MaLR 1 165 -256 6 820 2224 207 50 61 chr11 30826375 30826931 -91016925 - RLTR20B3 LTR ERVK -27 550 1 6 820 1582 188 11 7 chr11 30826931 30827194 -91016662 + MTC LTR MaLR 158 421 0 6 820 928 205 65 50 chr11 30827197 30827397 -91016459 + B3 SINE B2 14 216 0 6 820 587 207 200 6 chr11 30827411 30827581 -91016275 - B3 SINE B2 -13 203 1 6 820 387 178 132 11 chr11 30827619 30827710 -91016146 - PB1D7 SINE Alu 0 120 19 6 820 423 0 0 0 chr11 30828922 30828969 -91014887 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 820 396 286 135 16 chr11 30829023 30829215 -91014641 + MER21B LTR ERV1 381 595 -268 6 820 564 226 0 0 chr11 30829225 30829331 -91014525 + B3A SINE B2 1 106 -92 6 820 600 14 0 0 chr11 30829361 30829430 -91014426 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 820 406 303 12 116 chr11 30829437 30829609 -91014247 + MER21B LTR ERV1 597 750 -113 6 820 423 240 66 19 chr11 30829650 30829756 -91014100 - B1_Mur1 SINE Alu -26 123 13 6 820 189 0 0 0 chr11 30829762 30829783 -91014073 + (T)n Simple_repeat Simple_repeat 1 21 0 6 820 354 266 51 0 chr11 30829942 30830021 -91013835 - ID4_ SINE ID 0 83 1 6 820 1115 165 39 34 chr11 30830051 30830258 -91013598 - URR1B DNA MER1_type -17 208 1 6 820 209 33 33 0 chr11 30830379 30830409 -91013447 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 6 820 614 208 63 8 chr11 30830409 30830514 -91013342 - ID_B1 SINE B4 -9 215 106 6 820 234 0 0 0 chr11 30830514 30830540 -91013316 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 6 820 614 208 63 8 chr11 30830540 30830560 -91013296 - ID_B1 SINE B4 -119 105 84 6 820 467 281 19 52 chr11 30830629 30830783 -91013073 - B1_Mur1 SINE Alu 0 149 1 6 820 518 317 171 34 chr11 30832412 30832791 -91011065 + L1MEf LINE L1 834 1264 -4936 6 820 363 218 231 8 chr11 30833078 30833212 -91010644 + MER31B LTR ERV1 1 164 -302 6 820 1212 106 0 0 chr11 30833377 30833556 -91010300 + (CCTA)n Simple_repeat Simple_repeat 1 179 0 6 820 292 257 69 0 chr11 30833598 30833699 -91010157 + MER31B LTR ERV1 355 462 -4 6 820 281 313 266 5 chr11 30833722 30834342 -91009514 + L1ME2 LINE L1 5345 6124 -40 7 820 720 231 156 32 chr11 30834342 30834533 -91009323 - ID_B1 SINE B4 -70 222 16 7 820 241 274 48 0 chr11 30834572 30834634 -91009222 - ID4_ SINE ID -3 80 16 7 820 40 67 0 0 chr11 30834852 30834927 -91008929 + AT_rich Low_complexity Low_complexity 1 75 0 7 820 264 100 0 0 chr11 30835289 30835329 -91008527 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 7 820 26 50 0 0 chr11 30835458 30835498 -91008358 + AT_rich Low_complexity Low_complexity 1 40 0 7 820 27 0 0 0 chr11 30835712 30835739 -91008117 + AT_rich Low_complexity Low_complexity 1 27 0 7 820 252 300 86 0 chr11 30836027 30836097 -91007759 + ID4 SINE ID 6 81 -2 7 820 796 270 0 0 chr11 30836108 30836260 -91007596 + B3 SINE B2 10 161 -55 7 820 585 80 0 0 chr11 30836260 30836348 -91007508 + (CA)n Simple_repeat Simple_repeat 1 88 0 7 820 550 279 60 60 chr11 30836348 30836378 -91007478 + B2_Mm2 SINE B2 157 191 -4 7 820 187 281 85 0 chr11 30836550 30836632 -91007224 - MIRb SINE MIR -140 128 40 7 820 236 167 0 0 chr11 30836638 30836680 -91007176 - B1_Mur4 SINE Alu 0 150 109 7 820 688 187 67 0 chr11 30836822 30836956 -91006900 - B1_Mm SINE Alu 0 147 5 7 820 4055 205 97 71 chr11 30837001 30838987 -91004869 + Lx5 LINE L1 4950 7047 -3 7 820 2442 119 60 26 chr11 30839046 30839476 -91004380 - Lx4B LINE L1 -8 7050 6606 7 820 243 344 0 15 chr11 30840034 30840099 -91003757 - RSINE1 SINE B4 -96 69 6 7 820 31 82 0 0 chr11 30840226 30840299 -91003557 + AT_rich Low_complexity Low_complexity 1 73 0 7 820 779 274 53 0 chr11 30840525 30840715 -91003141 - B3 SINE B2 -11 205 6 7 820 331 252 186 16 chr11 30840765 30840894 -91002962 + MLT1A1 LTR MaLR 256 406 -2 7 820 404 258 239 0 chr11 30841347 30841506 -91002350 + MIR SINE MIR 35 231 -31 7 820 23 86 0 0 chr11 30841509 30841567 -91002289 + AT_rich Low_complexity Low_complexity 1 58 0 7 820 267 103 0 0 chr11 30841823 30841862 -91001994 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 7 820 722 278 22 31 chr11 30842031 30842254 -91001602 + ID_B1 SINE B4 2 222 -2 7 820 217 247 0 38 chr11 30842255 30842314 -91001542 + A-rich Low_complexity Low_complexity 1 57 0 7 820 234 148 0 36 chr11 30842256 30842312 -91001544 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 7 820 195 42 0 0 chr11 30842314 30842338 -91001518 + (CAA)n Simple_repeat Simple_repeat 1 24 0 7 820 217 247 0 38 chr11 30842338 30842358 -91001498 + A-rich Low_complexity Low_complexity 58 77 0 7 820 729 239 36 31 chr11 30842704 30842898 -91000958 - B3A SINE B2 0 198 4 7 820 265 300 25 12 chr11 30842926 30843007 -91000849 + ID4 SINE ID 2 83 0 7 820 359 183 14 27 chr11 30843244 30843317 -91000539 + B1_Mur2 SINE Alu 78 149 0 7 820 22 0 0 0 chr11 30843968 30843990 -90999866 + AT_rich Low_complexity Low_complexity 1 22 0 7 820 460 267 16 62 chr11 30844650 30844778 -90999078 + ID_B1 SINE B4 82 203 -21 7 820 5258 168 122 11 chr11 30844799 30846023 -90997833 - Lx5 LINE L1 -393 5487 4127 7 820 3253 190 36 60 chr11 30846019 30847005 -90996851 + Lx5 LINE L1 5538 6500 -558 7 820 1948 92 92 7 chr11 30847006 30847300 -90996556 + ORR1A4 LTR MaLR 1 319 -10 7 820 2143 261 15 36 chr11 30847300 30847884 -90995972 + Lx5 LINE L1 6476 7047 -3 7 820 29 60 0 0 chr11 30847929 30847979 -90995877 + AT_rich Low_complexity Low_complexity 1 50 0 7 820 254 106 21 0 chr11 30848956 30849003 -90994853 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 7 820 222 333 63 21 chr11 30849057 30849152 -90994704 - L2b LINE L2 -6 3369 3271 7 820 397 292 0 22 chr11 30849459 30849550 -90994306 - RSINE1 SINE B4 0 165 77 7 820 305 234 0 15 chr11 30849559 30849624 -90994232 - PB1D10 SINE Alu -31 86 23 7 820 457 250 28 9 chr11 30849678 30849787 -90994069 - PB1D9 SINE Alu -9 111 1 7 820 412 275 44 0 chr11 30850211 30850302 -90993554 + RSINE1 SINE B4 54 148 -17 7 820 419 319 75 13 chr11 30850373 30850532 -90993324 - ID_B1 SINE B4 -1 223 55 7 820 21 0 0 0 chr11 30852154 30852175 -90991681 + AT_rich Low_complexity Low_complexity 1 21 0 7 820 446 257 18 27 chr11 30852308 30852420 -90991436 - PB1D7 SINE Alu -9 111 1 7 820 347 292 0 0 chr11 30852974 30853063 -90990793 + B1_Mur3 SINE Alu 2 90 -59 7 820 362 281 10 20 chr11 30853213 30853311 -90990545 + B3A SINE B2 2 98 -100 7 820 1160 53 7 0 chr11 30854123 30854275 -90989581 + (GGA)n Simple_repeat Simple_repeat 3 155 0 7 820 548 179 74 33 chr11 30855969 30856090 -90987766 + B3 SINE B2 1 126 -90 7 820 25883 136 42 11 chr11 30856227 30859165 -90984691 + L1_Mus3 LINE L1 395 3475 -2408 7 820 264 91 0 0 chr11 30859165 30859209 -90984647 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 7 820 25883 123 33 7 chr11 30859209 30861703 -90982153 + L1_Mus3 LINE L1 3476 5995 -643 7 820 3347 72 41 19 chr11 30861703 30861990 -90981866 + MT2C_Mm LTR ERVL 1 285 -190 7 820 525 44 0 0 chr11 30861990 30862058 -90981798 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 820 3347 72 41 19 chr11 30862058 30862235 -90981621 + MT2C_Mm LTR ERVL 286 475 0 7 820 7345 89 5 8 chr11 30862235 30862872 -90980984 + L1_Mus3 LINE L1 5996 6632 -6 7 820 217 361 92 10 chr11 30862985 30863083 -90980773 - L2b LINE L2 -205 3170 3065 7 820 977 240 44 0 chr11 30863291 30863495 -90980361 - B3 SINE B2 -3 213 1 7 820 1897 141 75 78 chr11 30864013 30864397 -90979459 + ORR1B1 LTR MaLR 12 394 0 7 820 232 343 111 0 chr11 30864397 30864505 -90979351 - L2b LINE L2 -402 3017 2898 7 820 654 285 69 25 chr11 30864579 30864824 -90979032 + MLT1C LTR MaLR 1 256 -211 7 820 1475 200 109 72 chr11 30865083 30865487 -90978369 + MTD LTR MaLR 1 419 0 7 820 509 270 84 63 chr11 30865576 30865766 -90978090 - MER20 DNA MER1_type -6 213 20 7 820 497 292 58 114 chr11 30865963 30866364 -90977492 - MTE2b LTR MaLR -8 371 6 7 820 15980 154 35 40 chr11 30866842 30869141 -90974715 - L1_Mur2 LINE L1 -481 5396 3047 7 820 1113 99 0 0 chr11 30869141 30869302 -90974554 + (TTCC)n Simple_repeat Simple_repeat 3 163 0 7 820 15980 154 35 40 chr11 30869302 30869710 -90974146 - L1_Mur2 LINE L1 -2831 3046 2644 7 820 1858 119 78 10 chr11 30869710 30870016 -90973840 + ORR1A2 LTR MaLR 1 327 0 7 820 15980 154 35 40 chr11 30870016 30870757 -90973099 - L1_Mur2 LINE L1 -3234 2643 1964 7 820 5030 162 115 26 chr11 30870732 30871653 -90972203 - Lx4B LINE L1 -143 6915 5905 7 820 1826 68 8 0 chr11 30871653 30871918 -90971938 - L1_Mus1 LINE L1 0 6567 6323 7 820 5030 163 34 25 chr11 30871918 30872074 -90971782 - Lx4B LINE L1 -1154 5904 5755 7 820 180 77 0 0 chr11 30872176 30872202 -90971654 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 7 820 1287 171 30 43 chr11 30872227 30872532 -90971324 + RLTR22_Mur LTR ERVK 921 1221 -627 7 820 3746 161 41 72 chr11 30872533 30873517 -90970339 + Lx5 LINE L1 1558 2510 -3367 7 820 3712 145 9 10 chr11 30873517 30874208 -90969648 + Lx5 LINE L1 4631 5320 -557 7 820 632 165 126 0 chr11 30874204 30874331 -90969525 + Lx5 LINE L1 5456 5598 -279 7 820 3606 160 138 88 chr11 30874331 30874896 -90968960 - RMER19B LTR ERVK 0 902 249 7 820 342 0 0 0 chr11 30874896 30874934 -90968922 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 820 3606 160 138 88 chr11 30874934 30875227 -90968629 - RMER19B LTR ERVK -654 248 3 7 820 4057 231 80 9 chr11 30875227 30876537 -90967319 + Lx5 LINE L1 5599 7053 -5 7 820 1427 97 43 17 chr11 30877952 30878182 -90965674 - Lx3_Mus LINE L1 -8 7001 6766 7 820 218 312 92 20 chr11 30878480 30878578 -90965278 - PB1D10 SINE Alu 0 117 13 7 820 289 119 0 0 chr11 30878988 30879030 -90964826 + B1_Mm SINE Alu 98 139 -8 7 820 554 275 59 20 chr11 30879142 30879346 -90964510 + Lx6 LINE L1 7179 7390 -70 7 820 296 48 24 0 chr11 30879367 30879409 -90964447 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 820 621 285 7 0 chr11 30880032 30880169 -90963687 - ID_B1 SINE B4 -6 218 81 7 820 24 32 0 0 chr11 30880274 30880305 -90963551 + AT_rich Low_complexity Low_complexity 1 31 0 7 820 437 223 35 18 chr11 30880308 30880422 -90963434 - B1F1 SINE Alu -2 147 32 7 820 540 253 53 13 chr11 30880950 30881102 -90962754 - B3A SINE B2 -38 160 3 7 820 621 52 21 0 chr11 30881328 30881424 -90962432 + L1_Mus3 LINE L1 6540 6637 -1 7 820 1323 316 77 42 chr11 30881424 30882178 -90961678 + Lx8 LINE L1 6535 7314 -159 7 820 217 167 71 0 chr11 30882481 30882523 -90961333 - PB1D10 SINE Alu -1 116 72 7 820 483 292 41 0 chr11 30882486 30882633 -90961223 - ID_B1 SINE B4 -6 218 66 7 820 230 311 151 67 chr11 30882615 30882679 -90961177 - B4A SINE B4 -13 279 86 7 820 424 282 0 43 chr11 30882679 30882794 -90961062 - PB1D10 SINE Alu -7 110 1 7 820 336 77 0 0 chr11 30882856 30882908 -90960948 + (T)n Simple_repeat Simple_repeat 1 52 0 7 820 1144 89 0 0 chr11 30882939 30883085 -90960771 - B1_Mus2 SINE Alu 0 147 2 7 820 517 296 15 7 chr11 30883195 30883331 -90960525 + ID_B1 SINE B4 88 224 0 7 820 676 201 29 7 chr11 30883449 30883589 -90960267 + B1_Mur1 SINE Alu 1 143 -6 7 820 1171 69 0 0 chr11 30883900 30884045 -90959811 + B1_Mus1 SINE Alu 2 146 -2 7 820 328 282 0 0 chr11 30884240 30884311 -90959545 - RSINE1 SINE B4 -8 157 87 7 820 456 214 71 10 chr11 30884403 30884502 -90959354 - PB1D9 SINE Alu -13 107 3 7 820 339 130 0 0 chr11 30884786 30884840 -90959016 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 820 31 44 0 0 chr11 30884850 30884895 -90958961 + AT_rich Low_complexity Low_complexity 1 45 0 7 820 389 214 0 54 chr11 30885164 30885238 -90958618 - ID4_ SINE ID -9 74 5 7 820 252 0 0 0 chr11 30885428 30885456 -90958400 + (T)n Simple_repeat Simple_repeat 1 28 0 7 820 1348 224 67 24 chr11 30886812 30887142 -90956714 - RMER10A LTR ERVL -98 344 1 7 820 416 145 0 50 chr11 30888142 30888222 -90955634 - B2_Mm2 SINE B2 -18 177 102 7 820 7293 81 28 2 chr11 30888292 30889631 -90954225 - L1_Mus3 LINE L1 0 6638 5275 7 820 7128 33 0 0 chr11 30889604 30890484 -90953372 - L1Md_T LINE L1 -2 6580 5701 7 820 21700 137 28 27 chr11 30890481 30891925 -90951931 - L1VL1 LINE L1 -566 5317 3865 8 820 1201 54 0 13 chr11 30891925 30892074 -90951782 - B1_Mm SINE Alu 0 147 1 8 820 21700 137 28 27 chr11 30892074 30892492 -90951364 - L1VL1 LINE L1 -2019 3864 3481 8 820 3115 76 0 2 chr11 30892492 30892902 -90950954 - L1_Mus1 LINE L1 0 6567 6159 8 820 21700 137 28 27 chr11 30892902 30893836 -90950020 - L1VL1 LINE L1 -2403 3480 2569 8 820 1147 48 0 46 chr11 30893836 30893988 -90949868 - B1_Mm SINE Alu -2 145 1 8 820 21700 145 36 27 chr11 30893988 30896071 -90947785 - L1VL1 LINE L1 -3315 2568 411 8 820 22 35 0 0 chr11 30896273 30896302 -90947554 + AT_rich Low_complexity Low_complexity 1 29 0 8 820 601 283 52 13 chr11 30898761 30898915 -90944941 - RSINE1 SINE B4 -2 163 4 8 820 198 0 0 0 chr11 30898915 30898937 -90944919 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 8 820 499 248 18 54 chr11 30898937 30899048 -90944808 - PB1D9 SINE Alu -12 108 2 8 820 912 257 10 0 chr11 30899245 30899447 -90944409 - B3 SINE B2 -11 205 2 8 820 261 0 0 0 chr11 30899457 30899486 -90944370 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 820 187 366 24 0 chr11 30899548 30899630 -90944226 - L2a LINE L2 -72 3354 3271 8 820 476 298 36 33 chr11 30900602 30900815 -90943041 - B4A SINE B4 -25 267 8 8 820 311 302 30 30 chr11 30900822 30900921 -90942935 - RMER5 LTR ERV1 -42 492 394 8 820 1109 304 73 29 chr11 30900934 30901415 -90942441 + RMER5 LTR ERV1 33 534 0 8 820 423 263 10 10 chr11 30902118 30902218 -90941638 - PB1D10 SINE Alu -17 100 1 8 820 479 305 32 25 chr11 30902267 30902425 -90941431 - RSINE1 SINE B4 0 165 7 8 820 296 360 6 17 chr11 30902558 30902696 -90941160 - MIR SINE MIR -51 157 18 8 820 15953 111 37 2 chr11 30903970 30906390 -90937466 + MERVL_2A-int LTR ERVL 1715 4218 -1543 8 820 6943 148 44 3 chr11 30906392 30907560 -90936296 + MERVL_2A-int LTR ERVL 4389 5603 -158 8 820 268 219 13 40 chr11 30907583 30907659 -90936197 + ORR1A3-int LTR MaLR 567 640 -1323 8 820 257 81 0 0 chr11 30907660 30907697 -90936159 + MERVL-int LTR ERVL 5449 5485 0 8 820 4168 83 28 11 chr11 30907697 30908271 -90935585 + MT2B2 LTR ERVL 1 584 0 8 820 2881 149 59 24 chr11 30908273 30909005 -90934851 - Lx7 LINE L1 -1623 6073 5309 8 820 673 242 8 0 chr11 30909030 30909154 -90934702 + RSINE1 SINE B4 12 136 -29 8 820 291 28 0 0 chr11 30909211 30909247 -90934609 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 820 330 301 0 11 chr11 30909437 30909458 -90934398 - BC1_Mm scRNA scRNA -58 94 2 8 820 377 247 0 0 chr11 30909458 30909531 -90934325 - ID SINE ID -150 74 2 8 820 2904 49 0 0 chr11 30909576 30909922 -90933934 - ORR1A0 LTR MaLR 0 346 1 8 820 219 69 0 0 chr11 30909929 30909958 -90933898 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 8 820 577 267 84 20 chr11 30909960 30910338 -90933518 - L1MC3 LINE L1 -956 7039 6625 8 820 2807 206 104 35 chr11 30910385 30911074 -90932782 + RMER19A LTR ERVK 1 737 0 8 820 227 321 44 22 chr11 30911175 30911404 -90932452 - L1MC3 LINE L1 -1546 6449 6216 8 820 1112 48 21 0 chr11 30911421 30911566 -90932290 - B1_Mus1 SINE Alu 0 148 1 8 820 34889 70 6 15 chr11 30911568 30917759 -90926097 - L1Md_F2 LINE L1 0 6582 247 8 820 194 81 0 26 chr11 30917764 30917802 -90926054 + (CCCCCA)n Simple_repeat Simple_repeat 3 39 0 8 820 289 333 0 0 chr11 30917929 30917998 -90925858 + RSINE1 SINE B4 97 165 0 8 820 25 51 0 0 chr11 30918004 30918043 -90925813 + AT_rich Low_complexity Low_complexity 1 39 0 8 820 21 57 0 0 chr11 30919476 30919511 -90924345 + AT_rich Low_complexity Low_complexity 1 35 0 8 820 1098 56 7 7 chr11 30920032 30920170 -90923686 + B1_Mus2 SINE Alu 1 139 -8 8 820 411 38 0 0 chr11 30920170 30920223 -90923633 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 8 820 5738 84 55 12 chr11 30920830 30922463 -90921393 - L1VL2 LINE L1 -1789 1826 114 8 820 229 306 28 0 chr11 30922464 30922536 -90921320 + RLTR12B LTR ERVK 422 495 -33 8 820 436 276 63 63 chr11 30923178 30923321 -90920535 + B1_Mur3 SINE Alu 1 143 -6 8 820 980 249 122 45 chr11 30923353 30923707 -90920149 + RMER13A LTR ERVK 14 394 -466 8 820 302 344 71 71 chr11 30923839 30924008 -90919848 + RMER13A LTR ERVK 578 746 -114 8 820 4416 266 73 55 chr11 30924309 30925243 -90918613 + MYSERV-int LTR ERVK 4271 5245 -1305 8 820 2918 64 51 0 chr11 30925243 30925634 -90918222 + RLTR10A LTR ERVK 1 411 0 8 820 4416 266 73 55 chr11 30925634 30926733 -90917123 + MYSERV-int LTR ERVK 5246 6339 -211 8 820 660 230 5 71 chr11 30926853 30927064 -90916792 + MYSERV-int LTR ERVK 6354 6550 0 8 820 900 218 79 45 chr11 30927069 30927364 -90916492 + RLTR11A2 LTR ERVK 5 285 -168 8 820 1051 84 5 38 chr11 30927368 30927554 -90916302 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 820 225 0 0 0 chr11 30927555 30927580 -90916276 + (CAG)n Simple_repeat Simple_repeat 2 26 0 8 820 26 0 0 0 chr11 30929771 30929797 -90914059 + AT_rich Low_complexity Low_complexity 1 26 0 8 820 339 96 0 0 chr11 30929823 30929875 -90913981 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 820 517 318 33 7 chr11 30929983 30930135 -90913721 - B4A SINE B4 -136 156 1 8 820 2214 116 52 130 chr11 30930229 30930744 -90913112 - IAPLTR2_Mm LTR ERVK 0 475 1 8 820 418 261 0 50 chr11 30930750 30930871 -90912985 - PB1D9 SINE Alu 0 120 6 8 820 246 288 15 15 chr11 30930811 30930878 -90912978 - B4 SINE B4 -143 149 83 8 820 385 251 209 31 chr11 30930899 30930997 -90912859 - L1ME1 LINE L1 -183 5996 5874 8 820 279 0 0 0 chr11 30930997 30931028 -90912828 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 8 820 385 251 209 31 chr11 30931028 30931096 -90912760 - L1ME1 LINE L1 -306 5873 5811 8 820 2066 158 211 146 chr11 30931096 30931701 -90912155 + RMER6D LTR ERVK 1 657 -63 8 820 1289 20 0 0 chr11 30931701 30931848 -90912008 - B1_Mm SINE Alu 0 147 1 8 820 2066 158 211 146 chr11 30931848 30931918 -90911938 + RMER6D LTR ERVK 658 720 0 8 820 385 251 209 31 chr11 30931918 30932042 -90911814 - L1ME1 LINE L1 -369 5810 5654 8 820 237 317 66 11 chr11 30932098 30932280 -90911576 - L1ME1 LINE L1 -616 5563 5372 8 820 410 283 62 72 chr11 30932317 30932511 -90911345 - L1MC4 LINE L1 -48 7994 7803 8 820 2814 20 0 17 chr11 30932557 30932909 -90910947 + L1Md_T LINE L1 5241 5586 -297 8 102 8056 55 0 0 chr11 30932909 30933905 -90909951 + L1Md_T LINE L1 5587 6582 0 8 821 812 198 133 32 chr11 30933941 30933965 -90909891 - B3 SINE B2 -9 207 184 8 821 252 0 0 0 chr11 30933965 30933993 -90909863 + (TC)n Simple_repeat Simple_repeat 2 29 0 8 821 252 0 0 0 chr11 30933993 30934020 -90909836 + (TA)n Simple_repeat Simple_repeat 1 28 0 8 821 812 198 133 32 chr11 30934020 30934182 -90909674 - B3 SINE B2 -33 183 2 8 821 849 210 0 0 chr11 30934256 30934394 -90909462 - B1_Mus1 SINE Alu -5 143 6 8 821 483 303 19 44 chr11 30934394 30934410 -90909446 - ID_B1 SINE B4 0 219 70 8 821 258 81 0 0 chr11 30934945 30934982 -90908874 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 8 821 3495 114 73 14 chr11 30934984 30935573 -90908283 - RMER17B LTR ERVK -2 956 333 8 821 33814 51 0 4 chr11 30935695 30941384 -90902472 + L1Md_T LINE L1 1 5589 -297 8 821 8498 31 0 0 chr11 30941384 30942380 -90901476 + L1Md_T LINE L1 5590 6585 0 8 821 757 180 22 0 chr11 30942557 30942696 -90901160 - B1_Mus1 SINE Alu 0 148 7 8 821 281 322 30 53 chr11 30942603 30942734 -90901122 - MT2B LTR ERVL -345 256 129 8 821 15062 96 4 5 chr11 30942719 30945719 -90898137 - L1_Mus3 LINE L1 -10 6628 3634 8 821 879 271 109 52 chr11 30945796 30946008 -90897848 + ORR1D1 LTR MaLR 6 228 -146 8 821 243 88 0 0 chr11 30946008 30946042 -90897814 + (CCTG)n Simple_repeat Simple_repeat 1 34 0 8 821 879 271 109 52 chr11 30946042 30946176 -90897680 + ORR1D1 LTR MaLR 229 371 -3 8 821 5439 213 75 9 chr11 30946178 30947464 -90896392 + ORR1D1-int LTR MaLR 1 1370 0 8 821 1260 232 129 15 chr11 30947464 30947760 -90896096 + ORR1D1 LTR MaLR 1 334 -40 8 821 1773 188 75 16 chr11 30947760 30948144 -90895712 + MTB_Mm LTR MaLR 1 407 0 8 821 1260 232 129 15 chr11 30948144 30948180 -90895676 + ORR1D1 LTR MaLR 335 370 -4 8 821 502 307 83 0 chr11 30948280 30948472 -90895384 + Charlie10b DNA MER1_type 4 211 -31 8 821 3336 161 63 97 chr11 30948820 30949521 -90894335 - RMER19B LTR ERVK -225 677 1 8 821 2328 226 52 21 chr11 30949521 30950098 -90893758 - Lx7 LINE L1 -654 7042 6448 8 821 9504 50 1 1 chr11 30950330 30952313 -90891543 - L1Md_F2 LINE L1 0 6582 4601 8 821 14229 72 5 0 chr11 30952306 30955238 -90888618 - L1Md_F2 LINE L1 -2584 3299 355 8 821 355 170 225 11 chr11 30956539 30956628 -90887228 + B1_Mus2 SINE Alu 40 147 0 8 821 291 49 57 68 chr11 30956664 30956752 -90887104 + A-rich Low_complexity Low_complexity 2 88 0 8 821 462 18 0 0 chr11 30957129 30957184 -90886672 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 8 821 585 208 9 0 chr11 30957592 30957698 -90886158 - B1_Mur2 SINE Alu 0 149 43 8 821 374 300 74 29 chr11 30958147 30958322 -90885534 + B3A SINE B2 1 183 -15 8 821 22 56 0 0 chr11 30958325 30958361 -90885495 + AT_rich Low_complexity Low_complexity 1 36 0 8 821 180 0 0 0 chr11 30958427 30958447 -90885409 + (T)n Simple_repeat Simple_repeat 1 20 0 8 821 1093 52 0 0 chr11 30958455 30958590 -90885266 - B1_Mus1 SINE Alu 0 148 14 8 821 395 319 50 14 chr11 30960646 30960786 -90883070 - B1F1 SINE Alu -1 148 4 8 821 375 227 0 0 chr11 30960802 30960877 -90882979 - ID4_ SINE ID -8 75 1 8 821 22 0 0 0 chr11 30960909 30960931 -90882925 + AT_rich Low_complexity Low_complexity 1 22 0 8 821 1096 57 14 0 chr11 30961156 30961297 -90882559 - B1_Mus1 SINE Alu 0 148 6 8 821 22 56 0 0 chr11 30962030 30962066 -90881790 + AT_rich Low_complexity Low_complexity 1 36 0 8 821 9814 91 22 20 chr11 30962117 30964866 -90878990 - Lx3_Mus LINE L1 -7 7002 4270 8 821 860 151 0 0 chr11 30964866 30965005 -90878851 + ORR1A3 LTR MaLR 1 139 -187 8 821 15492 166 72 17 chr11 30965005 30968037 -90875819 - L1_Mur2 LINE L1 -587 5290 2057 8 821 396 55 0 0 chr11 30968037 30968092 -90875764 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 821 15492 166 72 17 chr11 30968092 30968620 -90875236 - L1_Mur2 LINE L1 -3821 2056 1533 8 821 1354 48 5 31 chr11 30968634 30968829 -90875027 - L1_Mus1 LINE L1 0 6567 6378 8 821 978 171 45 1 chr11 30968827 30969059 -90874797 - L1_Mur2 LINE L1 -4330 1550 1308 8 821 697 234 118 56 chr11 30969040 30969413 -90874443 - RMER1B Other Other -304 762 238 8 821 1207 28 14 0 chr11 30969469 30969610 -90874246 + B1_Mm SINE Alu 5 147 0 8 821 216 0 0 0 chr11 30970032 30970056 -90873800 + (T)n Simple_repeat Simple_repeat 1 24 0 8 821 21 71 0 0 chr11 30970682 30970724 -90873132 + AT_rich Low_complexity Low_complexity 1 42 0 8 821 7518 133 18 41 chr11 30970818 30972100 -90871756 - Lx2A LINE L1 0 7008 5757 8 821 18239 102 131 4 chr11 30972100 30975246 -90868610 - L1Md_F LINE L1 -1006 4877 1317 8 821 3218 52 3 0 chr11 30975246 30975630 -90868226 - IAPEY_LTR LTR ERVK 0 385 1 8 821 18239 148 101 12 chr11 30975630 30976712 -90867144 - L1Md_F LINE L1 -4567 1316 150 8 821 13568 130 13 10 chr11 30976712 30979781 -90864075 - L1VL4 LINE L1 -1947 3939 856 9 821 2978 76 15 2 chr11 30980153 30980548 -90863308 + MTB LTR MaLR 1 400 0 9 821 1160 61 0 7 chr11 30980695 30980831 -90863025 + B1_Mus1 SINE Alu 2 137 -11 9 821 213 65 0 0 chr11 30980831 30980862 -90862994 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 821 1160 61 0 7 chr11 30980862 30980873 -90862983 + B1_Mus1 SINE Alu 138 148 0 9 821 246 254 0 0 chr11 30981295 30981354 -90862502 + T-rich Low_complexity Low_complexity 1 59 0 9 821 192 40 0 0 chr11 30981666 30981691 -90862165 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 821 258 56 0 0 chr11 30983226 30983262 -90860594 + (T)n Simple_repeat Simple_repeat 1 36 0 9 821 1020 260 92 41 chr11 30983591 30983984 -90859872 - RMER10A LTR ERVL -23 419 7 9 821 32 0 0 0 chr11 30984206 30984238 -90859618 + AT_rich Low_complexity Low_complexity 1 32 0 9 821 1969 119 95 0 chr11 30985229 30985565 -90858291 - RLTR9A LTR ERVK 0 368 1 9 821 370 299 11 0 chr11 30985943 30986030 -90857826 - PB1D10 SINE Alu -19 98 11 9 821 3857 146 68 9 chr11 30986146 30986810 -90857046 - Lx4A LINE L1 -2 7056 6354 9 821 321 178 315 0 chr11 30987387 30987460 -90856396 + URR1A DNA MER1_type 1 96 -130 9 821 23 54 0 0 chr11 30987797 30987834 -90856022 + AT_rich Low_complexity Low_complexity 1 37 0 9 821 375 355 64 14 chr11 30987994 30988134 -90855722 + B1F SINE Alu 2 148 -1 9 821 925 150 14 7 chr11 30988224 30988372 -90855484 + B1_Mur4 SINE Alu 2 150 0 9 821 689 63 11 0 chr11 30988382 30988477 -90855379 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 9 821 309 279 26 43 chr11 30988552 30988668 -90855188 - RLTR14 LTR ERV1 -45 337 224 9 821 468 328 93 12 chr11 30988867 30989126 -90854730 - RLTR14-int LTR ERV1 0 5317 5038 9 821 865 275 87 46 chr11 30989259 30989674 -90854182 - RLTR14-int LTR ERV1 -4883 434 3 9 821 289 243 124 62 chr11 30989680 30989825 -90854031 - RLTR14 LTR ERV1 -5 377 224 9 821 1930 223 57 150 chr11 30989897 30990905 -90852951 - RMER17B LTR ERVK -43 915 2 9 821 228 285 224 7 chr11 30991102 30991254 -90852602 + MTC-int LTR MaLR 649 833 -425 9 821 289 238 16 0 chr11 30991547 30991610 -90852246 - Lx7 LINE L1 -1097 6599 6536 9 821 300 219 212 0 chr11 30991634 30991712 -90852144 + B1F1 SINE Alu 55 149 0 9 821 1303 57 15 35 chr11 30991818 30992018 -90851838 - L1_Mus3 LINE L1 -5 6633 6438 9 821 542 296 113 55 chr11 30992028 30992321 -90851535 + Tigger9b DNA MER2_type 312 621 -3 9 821 19668 137 30 13 chr11 30994504 30998781 -90845075 - L1_Mus4 LINE L1 -2 6637 2290 9 821 3492 137 19 17 chr11 30998762 30999921 -90843935 - L1_Mus4 LINE L1 -2180 1737 612 9 821 1070 251 9 0 chr11 31000152 31000363 -90843493 - B3 SINE B2 -2 214 2 1 821 366 274 266 26 chr11 31000771 31001000 -90842856 - B4A SINE B4 -7 285 2 2 821 26 0 0 0 chr11 31002543 31002569 -90841287 + AT_rich Low_complexity Low_complexity 1 26 0 3 821 521 356 44 44 chr11 31002762 31002944 -90840912 + Tigger5 DNA MER2_type 28 209 -2197 4 821 374 263 10 21 chr11 31002949 31003046 -90840810 + RLTR18B LTR ERVK 14 109 -403 5 821 200 31 62 0 chr11 31003376 31003408 -90840448 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 821 456 172 53 21 chr11 31003864 31003959 -90839897 + ID_B1 SINE B4 124 221 -3 7 821 591 40 0 0 chr11 31003995 31004069 -90839787 + (CATA)n Simple_repeat Simple_repeat 1 74 0 8 821 387 254 161 0 chr11 31004555 31004673 -90839183 - B1F SINE Alu -10 139 3 9 821 702 60 0 0 chr11 31005616 31005716 -90838140 + (TG)n Simple_repeat Simple_repeat 2 101 0 1 821 6962 177 54 13 chr11 31006345 31006447 -90837409 - Lx4B LINE L1 -1 7057 6939 1 821 468 62 0 0 chr11 31006447 31006511 -90837345 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 821 6962 177 54 13 chr11 31006511 31006678 -90837178 - Lx4B LINE L1 -120 6938 6757 1 821 198 0 0 0 chr11 31006678 31006700 -90837156 + (TGG)n Simple_repeat Simple_repeat 3 24 0 1 821 6962 175 54 15 chr11 31006700 31008005 -90835851 - Lx4B LINE L1 -302 6756 5417 1 821 4167 199 53 34 chr11 31008033 31009443 -90834413 - L1_Mur3 LINE L1 -3541 2336 870 1 821 529 333 28 45 chr11 31009683 31009862 -90833994 + B3 SINE B2 3 178 -38 1 821 254 213 16 0 chr11 31009893 31009954 -90833902 + B3 SINE B2 149 210 -6 1 821 323 355 65 7 chr11 31010126 31010279 -90833577 - L1MC4a LINE L1 -2036 5846 5685 1 821 1172 114 109 0 chr11 31010376 31010587 -90833269 + L1_Mur2 LINE L1 4335 4568 -1309 1 821 5362 192 30 9 chr11 31010587 31011591 -90832265 - Lx2A1 LINE L1 -2 7006 5982 1 821 23 0 0 0 chr11 31011964 31011987 -90831869 + AT_rich Low_complexity Low_complexity 1 23 0 2 821 384 272 0 0 chr11 31012661 31012753 -90831103 + PB1D10 SINE Alu 26 117 0 2 821 1152 71 0 0 chr11 31012768 31012908 -90830948 + B1_Mus1 SINE Alu 1 140 -8 2 821 188 34 0 33 chr11 31012908 31012938 -90830918 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 821 4791 72 28 11 chr11 31013077 31013822 -90830034 - MusHAL1 LINE L1 -1789 923 166 2 821 2675 255 75 19 chr11 31015393 31016214 -90827642 + Lx9 LINE L1 6511 7377 -267 2 821 306 67 0 0 chr11 31016232 31016277 -90827579 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 821 36 82 0 0 chr11 31016340 31016425 -90827431 + AT_rich Low_complexity Low_complexity 1 85 0 2 821 227 348 40 99 chr11 31016555 31016778 -90827078 - RMER4A LTR ERVK -249 217 8 2 821 2822 156 24 59 chr11 31017359 31017905 -90825951 + RLTR11A2 LTR ERVK 1 527 0 2 821 7059 82 6 3 chr11 31018002 31019086 -90824770 + L1_Mus1 LINE L1 5478 6653 -1 3 821 5855 79 6 14 chr11 31019103 31019912 -90823944 + L1_Mus3 LINE L1 5833 6635 -3 3 821 259 79 0 0 chr11 31019912 31019950 -90823906 + MurSatRep1 Unknown Unknown 1876 1913 -224 3 821 877 133 161 15 chr11 31019987 31020186 -90823670 + MurSatRep1 Unknown Unknown 1910 2137 0 3 821 339 287 19 19 chr11 31020214 31020436 -90823420 + MMSAT4 Satellite Satellite 1 222 0 3 821 336 318 33 44 chr11 31020321 31020604 -90823252 + MurSatRep1 Unknown Unknown 1845 2049 -88 3 821 427 324 63 0 chr11 31020900 31021042 -90822814 - ORR1D2 LTR MaLR -184 186 36 3 821 32370 76 3 6 chr11 31021167 31023971 -90819885 + L1Md_F2 LINE L1 934 3725 -2158 3 821 2752 51 0 6 chr11 31023971 31024323 -90819533 + L1Md_F2 LINE L1 6221 6570 -12 3 821 32370 75 3 9 chr11 31024323 31027107 -90816749 + L1Md_F2 LINE L1 3726 6496 -86 3 821 1696 149 88 83 chr11 31027110 31027497 -90816359 + RLTR9C LTR ERVK 2 390 -3 3 821 531 0 0 0 chr11 31027497 31027556 -90816300 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 821 285 282 23 154 chr11 31027576 31027706 -90816150 + PB1D7 SINE Alu 1 113 -7 4 821 702 271 32 37 chr11 31027596 31027784 -90816072 + B4 SINE B4 106 292 0 4 821 1060 274 41 10 chr11 31027787 31028174 -90815682 + L1MB3 LINE L1 5784 6182 -1 4 821 2334 71 15 27 chr11 31028217 31028548 -90815308 - IAPLTR2b LTR ERVK 0 327 1 4 821 1215 102 32 11 chr11 31028671 31028860 -90814996 - B2_Mm1t SINE B2 0 193 1 4 821 184 181 132 53 chr11 31029340 31029416 -90814440 - L2a LINE L2 -5 3421 3340 4 821 684 238 87 0 chr11 31029905 31030077 -90813779 - B3A SINE B2 -11 187 1 4 821 1613 247 35 30 chr11 31030415 31030820 -90813036 - MTD LTR MaLR 0 419 13 4 821 3659 120 51 0 chr11 31030848 31031432 -90812424 + L1Md_F LINE L1 282 895 -5624 4 821 7581 49 5 8 chr11 31031432 31032387 -90811469 + L1Md_F2 LINE L1 5631 6582 0 4 821 429 249 222 17 chr11 31032464 31032640 -90811216 + LTR48B LTR ERV1 431 642 -2 5 821 295 271 0 0 chr11 31032642 31032712 -90811144 + Cheshire DNA MER1_type 1400 1469 -951 5 821 705 300 56 8 chr11 31033112 31033361 -90810495 - MER2 DNA MER2_type 0 345 85 5 821 248 320 0 0 chr11 31033375 31033450 -90810406 + CT-rich Low_complexity Low_complexity 5 79 0 5 821 393 315 71 47 chr11 31033453 31033480 -90810376 - ID_B1 SINE B4 0 224 160 5 821 421 327 20 0 chr11 31033480 31033581 -90810275 - PB1D10 SINE Alu -10 107 5 5 821 393 315 71 47 chr11 31033581 31033623 -90810233 - ID_B1 SINE B4 0 159 51 5 821 2338 133 144 5 chr11 31033783 31034206 -90809650 + RLTR45 LTR ERVK 1 482 0 5 821 2141 131 69 11 chr11 31035434 31035781 -90808075 + ORR1B2 LTR MaLR 1 367 0 5 821 558 235 26 0 chr11 31035867 31035982 -90807874 - PB1D7 SINE Alu 0 120 3 5 821 444 364 94 31 chr11 31036069 31036147 -90807709 + Tigger15a DNA TcMar 197 273 -442 5 821 965 233 20 82 chr11 31036147 31036539 -90807317 - RLTR9A LTR ERVK 0 368 1 6 821 444 364 94 31 chr11 31036539 31036820 -90807036 + Tigger15a DNA TcMar 274 579 -136 5 821 214 217 84 28 chr11 31036830 31036901 -90806955 - MIRb SINE MIR 0 262 188 6 821 274 276 84 25 chr11 31036903 31037022 -90806834 + Tigger15a DNA TcMar 580 705 -10 5 821 634 309 182 13 chr11 31037128 31037436 -90806420 - Tigger7 DNA MER2_type -3 2488 2129 6 821 434 308 63 0 chr11 31037435 31037578 -90806278 - Tigger7 DNA MER2_type -2186 305 154 6 821 396 0 0 0 chr11 31037578 31037622 -90806234 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 821 2646 104 30 8 chr11 31037897 31038296 -90805560 - LTRIS2 LTR ERV1 -156 408 1 6 821 879 248 68 48 chr11 31038896 31039309 -90804547 + L1MA4 LINE L1 5546 5969 -220 6 821 2468 109 55 33 chr11 31039349 31039835 -90804021 + MT2B2 LTR ERVL 2 582 -2 6 821 23 0 0 0 chr11 31040372 31040395 -90803461 + AT_rich Low_complexity Low_complexity 1 23 0 6 821 835 231 90 115 chr11 31040432 31040923 -90802933 - RMER12 LTR ERVK 0 1322 645 6 821 4617 163 64 48 chr11 31040930 31041086 -90802770 - RMER12 LTR ERVK -399 923 803 6 821 243 0 0 0 chr11 31041086 31041113 -90802743 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 821 4617 138 50 40 chr11 31041113 31041854 -90802002 - RMER12 LTR ERVK -520 802 55 6 821 1817 197 86 8 chr11 31041864 31042247 -90801609 + MTC LTR MaLR 1 413 -8 7 821 21 0 0 0 chr11 31042796 31042817 -90801039 + AT_rich Low_complexity Low_complexity 1 21 0 7 821 2492 89 11 45 chr11 31042960 31043338 -90800518 - RLTR8 LTR ERVK 0 365 1 7 821 685 249 148 0 chr11 31043510 31043699 -90800157 + B4A SINE B4 4 220 -72 7 821 516 16 0 0 chr11 31043725 31043786 -90800070 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 821 465 231 123 16 chr11 31043994 31044214 -90799642 - L1MC4a LINE L1 -1440 6555 6321 7 821 271 61 20 39 chr11 31046017 31046068 -90797788 + (TTA)n Simple_repeat Simple_repeat 2 51 0 7 821 1437 74 0 26 chr11 31046154 31046349 -90797507 - B2_Mm2 SINE B2 -3 192 3 7 821 991 253 166 6 chr11 31046597 31046923 -90796933 + MTEa LTR MaLR 1 378 -1 7 821 433 258 6 6 chr11 31046969 31047133 -90796723 + (TA)n Simple_repeat Simple_repeat 2 165 0 8 821 397 215 2 14 chr11 31047190 31047292 -90796564 - B3 SINE B2 -91 107 7 8 821 596 274 96 0 chr11 31047304 31047450 -90796406 - B3A SINE B2 -37 161 2 8 821 465 19 0 0 chr11 31047458 31047512 -90796344 + (TTA)n Simple_repeat Simple_repeat 1 54 0 8 821 383 0 21 0 chr11 31048031 31048078 -90795778 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 821 324 0 0 0 chr11 31048830 31048866 -90794990 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 821 237 338 65 0 chr11 31048989 31049066 -90794790 - B1F SINE Alu -67 82 1 8 821 37707 32 0 6 chr11 31049701 31055886 -90787970 - L1Md_A LINE L1 0 6582 440 8 821 284 209 30 0 chr11 31055902 31055969 -90787887 - B3 SINE B2 -7 209 141 8 821 336 200 0 0 chr11 31055986 31056056 -90787800 + (TATG)n Simple_repeat Simple_repeat 2 71 0 8 821 316 291 171 34 chr11 31056057 31056203 -90787653 - B3A SINE B2 -16 182 17 9 821 314 292 0 43 chr11 31056259 31056352 -90787504 - MLT1A1 LTR MaLR -2 406 318 9 821 270 261 169 42 chr11 31056423 31056535 -90787321 + B1F1 SINE Alu 6 126 -23 9 821 426 20 0 0 chr11 31056540 31056591 -90787265 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 821 204 97 0 0 chr11 31056593 31056624 -90787232 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 9 821 654 144 105 26 chr11 31056803 31056917 -90786939 + B1_Mm SINE Alu 10 132 -15 9 821 11012 82 34 106 chr11 31057818 31058429 -90785427 + RLTR22_Mus LTR ERVK 1 596 -1212 9 821 1717 46 0 0 chr11 31058429 31058626 -90785230 - L1Md_T LINE L1 -12 6570 6374 9 821 11012 82 34 106 chr11 31058626 31059957 -90783899 + RLTR22_Mus LTR ERVK 597 1804 -4 9 821 449 141 12 0 chr11 31060714 31060799 -90783057 + (CA)n Simple_repeat Simple_repeat 1 86 0 9 821 266 311 40 0 chr11 31060801 31060875 -90782981 - L2a LINE L2 -331 3095 3019 9 821 180 111 0 0 chr11 31061232 31061259 -90782597 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 821 1026 140 378 22 chr11 31061260 31061493 -90782363 - Lx5 LINE L1 0 7058 6741 1 821 3791 53 20 2 chr11 31061507 31061994 -90781862 + LTRIS2 LTR ERV1 69 564 0 1 821 520 177 0 0 chr11 31061994 31062073 -90781783 - Lx5 LINE L1 -306 6744 6666 1 821 381 281 6 59 chr11 31063204 31063374 -90780482 + CT-rich Low_complexity Low_complexity 2 162 0 1 822 666 0 0 0 chr11 31064697 31064771 -90779085 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 822 270 136 0 0 chr11 31064774 31064818 -90779038 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 822 2076 228 118 50 chr11 31064864 31065410 -90778446 + RCHARR1 DNA MER1_type 181 754 -220 1 822 325 216 256 8 chr11 31065410 31065527 -90778329 + B1F SINE Alu 1 146 -3 1 822 2076 228 118 50 chr11 31065527 31065723 -90778133 + RCHARR1 DNA MER1_type 755 974 0 1 822 207 0 0 0 chr11 31065853 31065876 -90777980 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 822 743 187 108 140 chr11 31065890 31066284 -90777572 + MT2B2 LTR ERVL 7 571 -13 1 822 600 237 30 15 chr11 31066677 31066810 -90777046 - B1_Mur1 SINE Alu -2 147 13 1 822 225 103 0 0 chr11 31067040 31067079 -90776777 + RMER4A LTR ERVK 428 466 0 1 822 1072 72 50 7 chr11 31067316 31067456 -90776400 + B1_Mus1 SINE Alu 2 147 -1 1 822 203 140 23 23 chr11 31067980 31068024 -90775832 + T-rich Low_complexity Low_complexity 2 45 0 1 822 3535 88 11 0 chr11 31068170 31068612 -90775244 - LTRIS5 LTR ERV1 0 447 1 1 822 233 234 25 25 chr11 31068925 31069004 -90774852 + L1MC LINE L1 4965 5043 -1103 1 822 675 266 110 52 chr11 31069901 31070246 -90773610 - RLTR9A LTR ERVK -3 365 1 1 822 790 192 80 21 chr11 31070246 31070480 -90773376 + RMER10A LTR ERVL 55 302 -140 1 822 447 273 86 12 chr11 31070538 31070701 -90773155 + RMER10B LTR ERVL 202 376 -22 1 822 429 245 61 18 chr11 31070855 31071002 -90772854 - MT2A LTR ERVL 0 601 406 1 822 1000 253 169 102 chr11 31071137 31071635 -90772221 + MT2A LTR ERVL 3 533 0 1 822 31344 31 2 10 chr11 31073224 31077729 -90766127 - L1Md_A LINE L1 -1003 4880 416 1 822 236 279 12 12 chr11 31078586 31078666 -90765190 - MurSatRep1 Unknown Unknown -88 2049 1970 1 822 407 312 75 55 chr11 31078928 31079128 -90764728 + RLTR33 LTR ERVK 448 651 -27 1 822 362 361 37 30 chr11 31079155 31079247 -90764609 - MurSatRep1 Unknown Unknown -88 2049 1880 1 822 390 279 22 7 chr11 31079247 31079384 -90764472 - MMSAT4 Satellite Satellite -5 163 25 1 822 362 361 37 30 chr11 31079384 31079452 -90764404 - MurSatRep1 Unknown Unknown -88 1879 1751 1 822 281 271 96 52 chr11 31079458 31079502 -90764354 + ORR1A3-int LTR MaLR 564 613 -1350 1 822 3497 51 11 4 chr11 31079502 31079953 -90763903 + MT2C_Mm LTR ERVL 1 454 -21 1 822 10142 134 110 26 chr11 31079956 31081232 -90762624 + ORR1A2-int LTR MaLR 1 1378 -585 1 822 1169 82 0 20 chr11 31081232 31081244 -90762612 - B1_Mus1 SINE Alu 0 148 139 1 822 261 0 0 0 chr11 31081244 31081273 -90762583 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 822 1169 82 0 20 chr11 31081273 31081410 -90762446 - B1_Mus1 SINE Alu -10 138 2 1 822 10142 134 110 26 chr11 31081410 31081944 -90761912 + ORR1A2-int LTR MaLR 1379 1963 0 1 822 2413 106 22 0 chr11 31081944 31082264 -90761592 + ORR1A2 LTR MaLR 1 327 0 1 822 490 254 14 14 chr11 31082266 31082496 -90761360 - MMSAT4 Satellite Satellite -5 230 1 1 822 11009 244 22 29 chr11 31082509 31082846 -90761010 - MurSatRep1 Unknown Unknown 0 2137 1841 1 822 258 32 0 0 chr11 31082846 31082877 -90760979 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 822 11009 139 31 25 chr11 31082877 31083428 -90760428 - MurSatRep1 Unknown Unknown -151 1986 1439 1 822 1195 62 28 0 chr11 31083428 31083572 -90760284 - B1_Mus1 SINE Alu 0 148 1 1 822 11009 139 32 26 chr11 31083572 31084764 -90759092 - MurSatRep1 Unknown Unknown -699 1438 149 1 822 19504 150 60 14 chr11 31084987 31088902 -90754954 + Lx4B LINE L1 837 4927 -950 1 822 233 184 0 0 chr11 31088902 31088940 -90754916 + RLTR13D3 LTR ERVK 1 38 -1076 1 822 3587 25 8 0 chr11 31089097 31089490 -90754366 - MTA_Mm LTR MaLR 0 396 1 1 822 216 0 0 0 chr11 31089688 31089712 -90754144 + (A)n Simple_repeat Simple_repeat 1 24 0 1 822 249 158 0 0 chr11 31089802 31089840 -90754016 + B2_Mm2 SINE B2 1 38 -157 1 822 389 248 83 71 chr11 31090082 31090251 -90753605 + RLTR13D3 LTR ERVK 944 1114 0 1 822 7439 151 53 13 chr11 31090251 31092287 -90751569 + Lx4B LINE L1 4922 7052 -6 1 822 945 138 53 0 chr11 31092295 31092447 -90751409 - MurSatRep1 Unknown Unknown -1977 160 1 1 822 300 143 0 0 chr11 31092529 31092578 -90751278 + B3A SINE B2 1 49 -149 1 822 709 266 25 31 chr11 31092640 31092799 -90751057 + RLTR21 LTR ERVK 1 158 -1414 1 822 1281 41 0 13 chr11 31093672 31093821 -90750035 + B1_Mus1 SINE Alu 2 148 0 1 822 204 40 0 0 chr11 31093821 31093846 -90750010 + (A)n Simple_repeat Simple_repeat 1 25 0 1 822 2839 209 12 29 chr11 31094064 31094647 -90749209 + RLTR20B3 LTR ERVK 1 573 -4 1 822 205 211 38 38 chr11 31096441 31096520 -90747336 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 1 822 3546 38 5 0 chr11 31097047 31097441 -90746415 + MTA_Mm LTR MaLR 1 396 0 1 822 339 25 0 0 chr11 31097740 31097780 -90746076 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 822 3242 61 15 0 chr11 31097845 31098239 -90745617 + MTB LTR MaLR 1 400 0 1 822 287 219 39 56 chr11 31098693 31098839 -90745017 + B3 SINE B2 5 203 -13 1 822 12430 76 23 31 chr11 31099805 31101617 -90742239 - RLTR22_Mus LTR ERVK -10 1798 1 1 822 567 0 0 0 chr11 31101636 31101699 -90742157 + (CCA)n Simple_repeat Simple_repeat 1 63 0 1 822 252 59 0 0 chr11 31101699 31101733 -90742123 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1 822 22 35 0 0 chr11 31101756 31101785 -90742071 + AT_rich Low_complexity Low_complexity 1 29 0 1 822 340 125 14 27 chr11 31101882 31101956 -90741900 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1 822 8552 186 48 102 chr11 31102415 31104457 -90739399 - Lx2 LINE L1 0 6997 4966 1 822 297 242 15 0 chr11 31104457 31104523 -90739333 + ORR1A3-int LTR MaLR 1526 1592 -371 1 822 824 155 0 0 chr11 31104510 31104639 -90739217 + ORR1A3 LTR MaLR 190 318 -8 1 822 8552 186 48 102 chr11 31104639 31105116 -90738740 - Lx2 LINE L1 -2032 4965 4492 1 822 231 174 130 0 chr11 31105116 31105162 -90738694 - B3 SINE B2 -163 53 2 1 822 8552 186 48 102 chr11 31105162 31106359 -90737497 - Lx2 LINE L1 0 4491 3298 1 822 239 227 0 0 chr11 31106366 31106410 -90737446 + B1_Mus2 SINE Alu 96 139 -8 1 822 250 371 92 35 chr11 31106771 31106892 -90736964 - L2 LINE L2 -905 2514 2387 1 822 333 0 0 0 chr11 31106892 31106929 -90736927 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 822 609 52 0 0 chr11 31106930 31107007 -90736849 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 822 250 371 92 35 chr11 31107007 31107165 -90736691 - L2 LINE L2 -1033 2386 2217 1 822 507 314 7 62 chr11 31107180 31107326 -90736530 + B1_Mur1 SINE Alu 5 142 -7 1 822 2534 63 3 19 chr11 31107329 31107691 -90736165 + L1Md_F2 LINE L1 6247 6582 0 1 822 417 342 144 15 chr11 31109306 31109576 -90734280 - Lx8 LINE L1 -271 7202 6898 1 822 629 141 113 60 chr11 31109599 31109750 -90734106 - Lx3B LINE L1 0 6973 6815 1 822 1289 56 0 0 chr11 31109741 31109902 -90733954 + L1Md_F2 LINE L1 5824 5984 -598 1 822 2029 198 127 87 chr11 31110054 31110675 -90733181 - MMERGLN-int LTR ERV1 -6896 660 15 1 822 3358 108 10 4 chr11 31110700 31111192 -90732664 - RLTR1C LTR ERV1 -8 495 1 1 822 518 149 0 0 chr11 31111192 31111266 -90732590 + MERVK26-int LTR ERVK 6841 6914 -5 1 822 3337 188 38 21 chr11 31111274 31111905 -90731951 + RLTR26 LTR ERVK 1 642 0 1 822 4134 168 62 2 chr11 31111918 31112785 -90731071 - L1_Mur2 LINE L1 -691 5186 4268 1 822 2935 98 56 0 chr11 31112785 31113235 -90730621 + IAPLTR2_Mm LTR ERVK 1 475 0 1 822 976 115 25 81 chr11 31113236 31113434 -90730422 + IAPEz-int LTR ERVK 9 195 -6286 1 822 226 321 0 0 chr11 31113434 31113487 -90730369 + RLTR27 LTR ERVK 223 275 -34 1 822 3637 63 2 18 chr11 31113487 31113990 -90729866 + IAPEz-int LTR ERVK 168 662 -5819 1 822 2467 73 3 3 chr11 31113990 31114332 -90729524 + IAPEz-int LTR ERVK 1359 1700 -4781 1 822 6502 32 10 17 chr11 31114327 31115162 -90728694 + IAPEz-int LTR ERVK 5653 6481 0 1 822 2949 96 56 0 chr11 31115162 31115612 -90728244 + IAPLTR2_Mm LTR ERVK 1 475 0 1 822 2423 124 51 0 chr11 31115612 31116040 -90727816 - L1_Mur2 LINE L1 -1604 4273 3824 1 822 3717 181 31 30 chr11 31116039 31117291 -90726565 - L1VL2 LINE L1 -2303 1312 62 1 822 2163 184 27 5 chr11 31117303 31117707 -90726149 + RMER5 LTR ERV1 103 515 -19 1 822 644 70 0 25 chr11 31117718 31117836 -90726020 + L1Md_F3 LINE L1 6470 6584 0 1 822 392 191 11 0 chr11 31119608 31119697 -90724159 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 822 218 260 206 0 chr11 31119712 31119785 -90724071 + L2a LINE L2 3312 3399 -27 1 822 1184 77 130 25 chr11 31121088 31121288 -90722568 - RMER17B LTR ERVK -737 221 1 1 822 1905 278 68 35 chr11 31121407 31122083 -90721773 + Lx6 LINE L1 6737 7434 -26 1 822 865 167 0 0 chr11 31122585 31122723 -90721133 + B1_Mus2 SINE Alu 1 138 -9 1 822 295 270 9 18 chr11 31123408 31123521 -90720335 + GA-rich Low_complexity Low_complexity 1 112 0 1 822 277 270 37 65 chr11 31124016 31124123 -90719733 + RLTR14 LTR ERV1 227 330 -52 1 822 1904 146 41 35 chr11 31124581 31124685 -90719171 - MTB_Mm LTR MaLR -64 343 244 1 822 849 29 0 0 chr11 31124685 31124789 -90719067 + (GA)n Simple_repeat Simple_repeat 2 105 0 1 822 1904 146 41 35 chr11 31124789 31125025 -90718831 - MTB_Mm LTR MaLR -164 243 3 1 822 1299 253 82 52 chr11 31125833 31126271 -90717585 + RMER6B LTR ERVK 1 451 -10 1 822 29 28 0 0 chr11 31126740 31126776 -90717080 + AT_rich Low_complexity Low_complexity 1 36 0 1 822 308 298 146 21 chr11 31126876 31127068 -90716788 - B3 SINE B2 0 216 1 1 822 994 218 45 10 chr11 31127870 31128069 -90715787 + ORR1B2 LTR MaLR 1 206 -161 1 822 6013 68 5 0 chr11 31128096 31128862 -90714994 + Lx3_Mus LINE L1 6240 7009 0 1 822 192 40 0 0 chr11 31129122 31129147 -90714709 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 822 377 82 0 32 chr11 31129454 31129517 -90714339 + (TCC)n Simple_repeat Simple_repeat 1 61 0 1 822 409 268 43 43 chr11 31129553 31129670 -90714186 - PB1D10 SINE Alu 0 117 1 1 822 257 282 35 23 chr11 31129940 31130027 -90713829 + RMER10A LTR ERVL 328 415 -27 1 822 276 30 0 0 chr11 31130522 31130555 -90713301 + (CACTT)n Simple_repeat Simple_repeat 2 34 0 1 822 1208 171 203 58 chr11 31130558 31130869 -90712987 - RMER6C LTR ERVK -331 359 4 1 822 717 74 35 49 chr11 31131314 31131456 -90712400 - L1_Mus3 LINE L1 0 6638 6499 1 822 542 235 123 7 chr11 31131511 31131665 -90712191 - ORR1B1 LTR MaLR 0 394 223 1 822 407 300 36 0 chr11 31132313 31132423 -90711433 - ORR1B1 LTR MaLR -120 274 161 1 822 709 174 27 107 chr11 31132421 31132464 -90711392 - RMER2 LTR ERV1 -5 562 525 2 822 227 31 31 0 chr11 31132464 31132496 -90711360 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 822 1795 115 85 37 chr11 31132496 31132902 -90710954 - RMER2 LTR ERV1 -43 524 1 2 822 577 223 57 7 chr11 31132902 31133027 -90710829 - ORR1B1 LTR MaLR -250 144 12 1 822 3755 43 0 21 chr11 31133027 31133505 -90710351 - L1Md_F2 LINE L1 0 6582 6115 2 822 1941 45 0 0 chr11 31133510 31133757 -90710099 + L1Md_F2 LINE L1 5710 5956 -626 2 822 261 231 0 0 chr11 31134373 31134425 -90709431 + MLT2B2 LTR ERVL 20 71 -444 2 822 1841 160 11 34 chr11 31134425 31134776 -90709080 + RLTR28 LTR ERVL 24 366 -158 2 822 329 314 36 65 chr11 31134776 31134984 -90708872 + RLTR25B LTR ERVK 1 201 -902 2 822 207 0 0 0 chr11 31135141 31135164 -90708692 + (T)n Simple_repeat Simple_repeat 1 23 0 2 822 22 56 0 0 chr11 31135765 31135801 -90708055 + AT_rich Low_complexity Low_complexity 1 36 0 2 822 1959 101 12 59 chr11 31135863 31136201 -90707655 - RLTRETN_Mm LTR ERVK 0 322 1 2 822 807 176 70 0 chr11 31136306 31136493 -90707363 + RLTR28 LTR ERVL 324 523 -1 2 822 307 233 2 0 chr11 31136510 31136592 -90707264 + MLT2B2 LTR ERVL 69 151 -403 2 822 401 283 0 63 chr11 31136628 31136777 -90707079 + ORR1D2 LTR MaLR 9 123 -247 2 822 3622 132 74 0 chr11 31137434 31138026 -90705830 + Lx4A LINE L1 6421 7056 -2 2 822 21 89 0 0 chr11 31138222 31138278 -90705578 + AT_rich Low_complexity Low_complexity 1 56 0 2 822 229 337 35 0 chr11 31138475 31138561 -90705295 + Tigger5 DNA MER2_type 2318 2406 0 2 822 897 232 59 43 chr11 31138660 31139094 -90704762 - Lx9 LINE L1 -1568 6076 5589 2 822 2319 129 88 13 chr11 31139097 31139481 -90704375 - MTC LTR MaLR -8 413 1 2 822 1182 213 27 36 chr11 31139486 31139817 -90704039 - Lx9 LINE L1 -257 5590 5263 2 822 245 89 51 51 chr11 31139817 31139876 -90703980 - B2_Mm2 SINE B2 0 195 137 2 822 6560 81 33 5 chr11 31139903 31141011 -90702845 + L1_Mus2 LINE L1 5428 6566 0 2 822 990 246 34 0 chr11 31141839 31142046 -90701810 + B3 SINE B2 3 216 0 2 822 19158 137 39 8 chr11 31142090 31143455 -90700401 + L1VL2 LINE L1 625 2053 -3833 2 822 3391 33 2 0 chr11 31143455 31143850 -90700006 + MTA_Mm LTR MaLR 1 396 0 2 822 19158 175 14 15 chr11 31143850 31146010 -90697846 + L1VL2 LINE L1 2054 4186 -1700 2 822 189 0 0 0 chr11 31146010 31146031 -90697825 + (ATATG)n Simple_repeat Simple_repeat 3 23 0 2 822 19158 175 14 15 chr11 31146031 31147085 -90696771 + L1VL2 LINE L1 4187 5238 -648 2 822 1178 198 90 0 chr11 31147083 31147361 -90696495 + Lx2 LINE L1 6007 6309 -688 2 822 1236 174 172 57 chr11 31147359 31147836 -90696020 + Lx2 LINE L1 6426 6996 -4 2 822 183 162 0 0 chr11 31148299 31148336 -90695520 + GA-rich Low_complexity Low_complexity 4 40 0 2 822 380 195 63 84 chr11 31148847 31148942 -90694914 + RLTR18B LTR ERVK 3 95 -417 2 822 285 29 0 0 chr11 31148942 31148976 -90694880 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 822 3457 157 59 30 chr11 31149856 31150629 -90693227 + Lx LINE L1 5917 6643 -11 2 822 258 261 141 28 chr11 31150654 31150796 -90693060 + L1_Mur2 LINE L1 4031 4188 -1689 2 822 680 218 8 0 chr11 31150839 31150972 -90692884 - B1_Mur4 SINE Alu -10 140 7 2 822 472 289 162 36 chr11 31150974 31151616 -90692240 + Lx9 LINE L1 4215 4937 -1206 2 822 2353 162 28 19 chr11 31151624 31151705 -90692151 + Lx4A LINE L1 6633 6714 -344 2 822 1998 113 67 42 chr11 31151705 31152064 -90691792 - RLTR9A LTR ERVK 0 368 1 2 822 2353 162 28 19 chr11 31152064 31152404 -90691452 + Lx4A LINE L1 6715 7058 0 2 822 29 0 0 0 chr11 31152404 31152433 -90691423 + AT_rich Low_complexity Low_complexity 1 29 0 2 822 237 33 0 0 chr11 31152453 31152483 -90691373 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 822 407 68 0 17 chr11 31152748 31152808 -90691048 + (ATG)n Simple_repeat Simple_repeat 2 60 0 2 822 637 253 38 83 chr11 31152827 31153162 -90690694 + Lx9 LINE L1 5301 5648 -643 2 822 427 215 8 15 chr11 31153214 31153349 -90690507 + Lx9 LINE L1 5781 5935 -1709 2 822 1196 246 33 9 chr11 31153362 31153694 -90690162 + Lx9 LINE L1 7129 7468 -176 2 822 228 232 71 0 chr11 31153706 31153805 -90690051 + Lx9 LINE L1 7537 7642 -2 2 822 242 0 61 0 chr11 31154064 31154097 -90689759 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 822 1078 80 7 0 chr11 31154097 31154235 -90689621 - B1_Mus2 SINE Alu -8 139 1 2 822 23 33 0 0 chr11 31154588 31154618 -90689238 + AT_rich Low_complexity Low_complexity 1 30 0 2 822 26336 162 15 51 chr11 31154620 31156635 -90687221 + L1_Mus3 LINE L1 511 2451 -3432 2 822 606 93 0 0 chr11 31156635 31156721 -90687135 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 822 26336 118 19 10 chr11 31156721 31160881 -90682975 + L1_Mus3 LINE L1 2452 6634 -4 2 822 1056 87 0 0 chr11 31161114 31161252 -90682604 + B1_Mus1 SINE Alu 5 142 -6 2 822 463 344 31 0 chr11 31161604 31161764 -90682092 + B3 SINE B2 24 188 -28 2 822 631 307 91 19 chr11 31161856 31162534 -90681322 + L1MB5 LINE L1 4157 4883 -1263 2 822 1452 225 92 15 chr11 31162562 31162946 -90680910 + MTD LTR MaLR 3 401 -18 2 822 473 283 107 36 chr11 31162973 31163358 -90680498 + L1MB5 LINE L1 4917 5328 -818 2 822 306 325 110 32 chr11 31163584 31164086 -90679770 + L1MB5 LINE L1 5581 6121 -57 2 822 224 340 99 52 chr11 31164222 31164433 -90679423 + L2a LINE L2 3206 3426 0 2 822 437 312 16 57 chr11 31165420 31165665 -90678191 + L1M4 LINE L1 5584 5818 -366 2 822 24531 157 22 13 chr11 31165680 31171626 -90672230 + Lx LINE L1 393 6647 -7 2 822 206 118 0 0 chr11 31171635 31171669 -90672187 + (A)n Simple_repeat Simple_repeat 1 34 0 2 822 300 185 0 0 chr11 31172182 31172236 -90671620 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 822 687 165 0 0 chr11 31172242 31172375 -90671481 + (CATA)n Simple_repeat Simple_repeat 3 135 0 2 822 245 312 15 15 chr11 31174588 31174653 -90669203 - ID4 SINE ID -7 76 12 2 822 1723 10 0 0 chr11 31175721 31175914 -90667942 - B2_Mm1a SINE B2 0 193 1 2 822 201 171 0 24 chr11 31177052 31177094 -90666762 + A-rich Low_complexity Low_complexity 3 43 0 2 822 224 30 30 0 chr11 31177523 31177556 -90666300 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 822 299 367 32 32 chr11 31177561 31177685 -90666171 - ID_B1 SINE B4 -13 211 88 2 822 330 320 117 55 chr11 31177913 31178187 -90665669 + MLT1I LTR MaLR 119 409 -2 2 822 191 148 0 0 chr11 31178408 31178435 -90665421 - L2c LINE L2 -371 3016 2990 2 822 415 184 50 10 chr11 31178541 31178640 -90665216 - Lx9 LINE L1 -8 7636 7534 2 822 180 0 0 0 chr11 31178643 31178663 -90665193 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 822 1230 222 39 96 chr11 31178663 31178997 -90664859 - ORR1C1 LTR MaLR -63 315 1 2 822 4792 246 33 34 chr11 31178997 31180273 -90663583 - ORR1C1-int LTR MaLR 0 1370 96 2 822 242 304 162 29 chr11 31182969 31183086 -90660770 - B3A SINE B2 -68 148 19 2 822 740 168 229 0 chr11 31183093 31183272 -90660584 - URR1A DNA MER1_type 0 226 7 2 822 206 105 0 26 chr11 31183401 31183440 -90660416 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2 822 724 227 0 7 chr11 31183449 31183591 -90660265 - B1_Mur3 SINE Alu -8 141 1 2 822 871 178 16 72 chr11 31183594 31183788 -90660068 - B2_Mm2 SINE B2 -9 186 4 2 822 217 246 45 15 chr11 31184003 31184069 -90659787 - L2 LINE L2 -1036 2383 2316 2 822 1294 189 37 164 chr11 31184809 31185265 -90658591 - RMER10B LTR ERVL 0 398 1 2 822 180 189 0 51 chr11 31186046 31186085 -90657771 + MIRm SINE MIR 46 82 -194 2 822 1317 99 3 3 chr11 31186138 31186470 -90657386 + (GAAA)n Simple_repeat Simple_repeat 1 332 0 2 822 305 300 135 9 chr11 31186476 31186587 -90657269 + HAL1-3A_ME LINE L1 2284 2408 -450 2 822 256 262 12 24 chr11 31186678 31186760 -90657096 - ID4_ SINE ID -1 82 2 2 822 181 171 57 0 chr11 31186816 31186851 -90657005 - MIRc SINE MIR -105 163 127 2 822 1674 189 108 3 chr11 31187004 31187391 -90656465 + L1_Mur2 LINE L1 4936 5363 -514 2 822 233 191 0 0 chr11 31187629 31187671 -90656185 + GA-rich Low_complexity Low_complexity 1 42 0 2 822 458 33 0 16 chr11 31187847 31187908 -90655948 + (TTTTC)n Simple_repeat Simple_repeat 1 60 0 2 822 1421 34 0 11 chr11 31187908 31188088 -90655768 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 2 822 756 33 0 0 chr11 31188103 31188194 -90655662 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 2 822 591 241 28 15 chr11 31188194 31188318 -90655538 - B1_Mus1 SINE Alu -10 138 5 2 822 303 283 47 157 chr11 31188318 31188350 -90655506 - B4 SINE B4 -76 216 77 2 822 588 182 45 9 chr11 31188334 31188445 -90655411 + MTD LTR MaLR 6 120 -299 2 822 734 84 0 9 chr11 31188440 31188548 -90655308 - BC1_Mm scRNA scRNA -45 107 1 2 822 767 201 139 3 chr11 31188541 31188736 -90655120 + MTD LTR MaLR 99 316 -105 2 822 895 121 13 6 chr11 31188739 31188897 -90654959 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 2 822 208 382 53 8 chr11 31189642 31189774 -90654082 + MIRb SINE MIR 11 148 -120 2 822 10842 86 22 64 chr11 31190014 31191278 -90652578 + L1_Mus2 LINE L1 4189 5477 -1089 2 822 1522 22 0 0 chr11 31191278 31191459 -90652397 + B2_Mm1a SINE B2 7 187 -6 2 822 10842 86 22 64 chr11 31191459 31192524 -90651332 + L1_Mus2 LINE L1 5478 6565 -1 2 822 531 0 0 0 chr11 31192970 31193029 -90650827 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 822 602 204 10 0 chr11 31193057 31193160 -90650696 + B1_Mus2 SINE Alu 23 126 -21 2 822 225 0 0 0 chr11 31193729 31193754 -90650102 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 822 630 197 53 0 chr11 31193762 31193894 -90649962 - B1_Mus2 SINE Alu -8 139 1 2 822 1589 296 125 18 chr11 31193995 31194984 -90648872 + L1MC LINE L1 4143 5237 -909 2 102 320 374 48 27 chr11 31195033 31195197 -90648659 + L1MC LINE L1 5442 5611 -722 2 823 510 31 0 0 chr11 31195197 31195261 -90648595 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 823 320 374 48 27 chr11 31195261 31195283 -90648573 + L1MC LINE L1 5612 5632 -701 2 823 5318 133 95 2 chr11 31195283 31196496 -90647360 - Lx LINE L1 -578 6076 4712 2 823 498 169 0 10 chr11 31196499 31196595 -90647261 + Lx LINE L1 4586 4680 -1203 2 823 781 272 145 10 chr11 31198897 31199044 -90644812 - Lx7 LINE L1 -1778 5918 5738 2 823 219 69 0 0 chr11 31199044 31199073 -90644783 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 823 781 287 108 7 chr11 31199073 31199289 -90644567 - Lx7 LINE L1 -143 5737 5510 2 823 1366 89 10 5 chr11 31199995 31200187 -90643669 + B2_Mm1t SINE B2 1 193 0 2 823 1191 63 6 0 chr11 31200383 31200542 -90643314 - L1_Mus2 LINE L1 0 6566 6407 2 823 523 271 128 101 chr11 31200680 31201046 -90642810 + MTEa LTR MaLR 1 376 -3 2 823 243 0 0 0 chr11 31202256 31202283 -90641573 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 823 207 0 0 0 chr11 31202291 31202314 -90641542 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 823 379 358 83 5 chr11 31202698 31202903 -90640953 + MIR SINE MIR 8 228 -34 2 823 265 331 114 41 chr11 31204006 31204129 -90639727 - LTR33B LTR ERVL -326 177 46 2 823 268 244 86 37 chr11 31204788 31204827 -90639029 + PB1D7 SINE Alu 18 60 -60 3 823 1705 224 62 3 chr11 31204827 31205032 -90638824 + MTC LTR MaLR 1 225 -196 3 823 576 0 0 0 chr11 31205032 31205096 -90638760 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3 823 1705 224 62 3 chr11 31205096 31205280 -90638576 + MTC LTR MaLR 226 412 -9 3 823 326 246 0 28 chr11 31205277 31205348 -90638508 + PB1D10 SINE Alu 47 115 -2 3 823 210 105 0 0 chr11 31205685 31205723 -90638133 + (T)n Simple_repeat Simple_repeat 1 38 0 3 823 249 65 43 0 chr11 31206117 31206163 -90637693 - L1Md_F2 LINE L1 -9 6573 6526 3 823 10239 114 4 28 chr11 31206156 31207778 -90636078 - L1_Mm LINE L1 -909 4974 3392 3 823 2207 131 33 68 chr11 31207779 31208206 -90635650 + RMER17D2 LTR ERVK 1 412 -397 3 823 1954 57 4 0 chr11 31208472 31208736 -90635120 + L1_Mm LINE L1 2960 3224 -2659 3 823 2255 98 6 41 chr11 31208738 31209140 -90634716 + RMER17D2 LTR ERVK 434 809 0 3 823 13506 108 28 3 chr11 31209140 31211383 -90632473 - L1VL1 LINE L1 -519 3179 886 3 823 35887 60 4 1 chr11 31211373 31217293 -90626563 - L1Md_F3 LINE L1 -2 6582 648 3 823 1495 176 3 0 chr11 31217296 31217580 -90626276 - L1Md_F LINE L1 -5491 1028 744 3 823 688 303 10 98 chr11 31220274 31220468 -90623388 + B3 SINE B2 15 191 -4 3 823 270 291 38 0 chr11 31221257 31221336 -90622520 - PB1D7 SINE Alu -8 112 31 3 823 522 221 0 0 chr11 31221362 31221493 -90622363 + (TA)n Simple_repeat Simple_repeat 2 132 0 3 823 540 325 0 32 chr11 31221527 31221683 -90622173 - RSINE1 SINE B4 -3 162 12 3 823 565 260 25 34 chr11 31222152 31222339 -90621517 + B3 SINE B2 1 182 -16 3 823 2944 186 34 210 chr11 31222605 31223650 -90620206 + RMER19B LTR ERVK 4 865 -37 3 823 687 25 0 0 chr11 31223659 31223740 -90620116 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 823 8434 35 3 2 chr11 31223740 31224846 -90619010 - L1Md_F3 LINE L1 -15 6569 5458 3 823 717 305 58 55 chr11 31225471 31225862 -90617994 + MTE2a LTR MaLR 17 419 0 3 823 26 50 0 0 chr11 31226237 31226277 -90617579 + AT_rich Low_complexity Low_complexity 1 40 0 3 823 394 269 0 0 chr11 31227101 31227194 -90616662 + RSINE1 SINE B4 3 95 -70 3 823 26 50 0 0 chr11 31227264 31227304 -90616552 + AT_rich Low_complexity Low_complexity 1 40 0 3 823 430 318 153 38 chr11 31229153 31229441 -90614415 + MLT1A0 LTR MaLR 3 323 -42 3 823 2421 194 111 11 chr11 31229716 31230248 -90613608 + RMER4B LTR ERVK 1 585 0 3 823 1123 40 26 0 chr11 31230679 31230830 -90613026 + (GGGAGA)n Simple_repeat Simple_repeat 3 157 0 3 823 282 167 56 0 chr11 31231490 31231544 -90612312 + L1VL1 LINE L1 102 158 -6264 3 823 33151 88 11 7 chr11 31231549 31236866 -90606990 + L1Md_F2 LINE L1 272 5586 -297 3 823 7092 97 15 5 chr11 31236867 31237852 -90606004 + L1Md_F2 LINE L1 5588 6582 0 3 823 16344 124 32 11 chr11 31237852 31241164 -90602692 + L1_Mus3 LINE L1 3261 6637 -1 3 823 1119 117 0 0 chr11 31241300 31241471 -90602385 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 3 823 343 204 11 21 chr11 31241471 31241566 -90602290 + GA-rich Low_complexity Low_complexity 3 96 0 3 823 688 300 66 23 chr11 31241603 31242118 -90601738 + L1M2 LINE L1 3205 3741 -2402 3 823 195 120 0 115 chr11 31242393 31242497 -90601359 + (CCCTAA)n Simple_repeat Simple_repeat 6 97 0 3 823 375 103 5 103 chr11 31242530 31242725 -90601131 + (CCCTAA)n Simple_repeat Simple_repeat 2 177 0 3 823 503 124 11 56 chr11 31242806 31242986 -90600870 + (CCCTAA)n Simple_repeat Simple_repeat 1 172 0 3 823 604 117 6 47 chr11 31243005 31243175 -90600681 + (CCCTAA)n Simple_repeat Simple_repeat 3 165 0 3 823 549 118 0 98 chr11 31243189 31243526 -90600330 + (CCCTAA)n Simple_repeat Simple_repeat 1 304 0 3 823 692 83 6 62 chr11 31243578 31243757 -90600099 + (CCCTAA)n Simple_repeat Simple_repeat 1 169 0 3 823 3578 23 0 0 chr11 31243757 31244153 -90599703 - MTA_Mm LTR MaLR 0 396 1 3 823 9627 9 19 1 chr11 31244153 31245232 -90598624 - MTA_Mm-int LTR MaLR 0 1098 1 3 823 3591 20 0 0 chr11 31245232 31245628 -90598228 - MTA_Mm LTR MaLR 0 396 1 3 823 368 105 7 95 chr11 31245630 31245777 -90598079 + (CCCTAA)n Simple_repeat Simple_repeat 5 138 0 3 823 607 79 12 73 chr11 31245795 31245959 -90597897 + (CCCTAA)n Simple_repeat Simple_repeat 5 158 0 3 823 637 85 16 78 chr11 31245984 31246176 -90597680 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 3 823 492 293 161 22 chr11 31246710 31247170 -90596686 - L1ME2 LINE L1 -326 5838 5315 3 823 667 214 61 122 chr11 31247212 31247441 -90596415 - B3 SINE B2 -1 215 1 3 823 2369 88 28 3 chr11 31247807 31248126 -90595730 + ORR1A2 LTR MaLR 1 327 0 3 823 229 281 44 11 chr11 31248131 31248221 -90595635 - HAL1 LINE L1 -970 1537 1445 3 823 201 74 0 0 chr11 31248623 31248650 -90595206 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3 823 422 49 16 0 chr11 31248656 31248717 -90595139 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 823 364 349 84 6 chr11 31248737 31248904 -90594952 - B4A SINE B4 -8 284 105 3 823 746 210 14 14 chr11 31249299 31249444 -90594412 + B1F SINE Alu 1 145 -4 3 823 228 35 0 0 chr11 31249494 31249523 -90594333 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 823 737 155 0 8 chr11 31249745 31249875 -90593981 + ORR1D1 LTR MaLR 2 130 -244 3 823 326 23 23 0 chr11 31249876 31249919 -90593937 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 823 1688 219 89 57 chr11 31249923 31250546 -90593310 + RMER19B LTR ERVK 80 902 0 3 823 464 242 153 0 chr11 31250546 31250658 -90593198 + ORR1D1 LTR MaLR 244 374 0 3 823 1331 93 0 45 chr11 31250857 31251059 -90592797 - B2_Mm2 SINE B2 -2 193 1 3 823 355 284 138 18 chr11 31251372 31251650 -90592206 + LTR16B1 LTR ERVL 109 441 -39 3 823 817 299 71 44 chr11 31251658 31252022 -90591834 + MTEa LTR MaLR 6 379 0 3 823 569 260 0 0 chr11 31254028 31254155 -90589701 - RSINE1 SINE B4 -36 129 3 3 823 240 35 0 0 chr11 31254317 31254346 -90589510 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 823 791 194 17 0 chr11 31255390 31255565 -90588291 + T-rich Low_complexity Low_complexity 2 179 0 3 823 228 86 0 0 chr11 31256318 31256353 -90587503 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3 823 2209 68 14 0 chr11 31256361 31256640 -90587216 - L1_Mus1 LINE L1 0 6567 6285 3 823 346 203 58 0 chr11 31256684 31256753 -90587103 - RSINE1 SINE B4 -20 145 73 3 823 382 345 85 24 chr11 31258549 31258760 -90585096 + MER58A DNA MER1_type 1 224 0 3 823 521 268 139 29 chr11 31263736 31264016 -90579840 + MER2 DNA MER2_type 35 345 0 3 823 264 242 212 26 chr11 31264868 31265047 -90578809 + MIR SINE MIR 18 233 -35 3 823 495 0 0 0 chr11 31267304 31267359 -90576497 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 823 291 146 0 0 chr11 31269911 31269966 -90573890 + (TCC)n Simple_repeat Simple_repeat 2 56 0 3 823 1006 73 5 48 chr11 31270301 31270488 -90573368 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 823 198 0 0 0 chr11 31271167 31271189 -90572667 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 823 379 313 0 0 chr11 31274250 31274349 -90569507 + PB1 SINE Alu 1 99 -28 3 823 819 146 30 0 chr11 31274986 31275151 -90568705 + CT-rich Low_complexity Low_complexity 3 172 0 3 823 1423 309 127 83 chr11 31275153 31276474 -90567382 + Looper DNA PiggyBac 49 1427 -131 3 823 528 16 0 0 chr11 31276855 31276916 -90566940 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 823 239 324 27 0 chr11 31277929 31278003 -90565853 + Lx8 LINE L1 7252 7327 -146 3 823 1233 147 15 114 chr11 31278034 31278296 -90565560 - ORR1B1 LTR MaLR -118 276 41 3 823 1104 270 107 41 chr11 31278311 31278997 -90564859 - Lx8 LINE L1 -706 6767 6027 3 823 2058 128 71 3 chr11 31279514 31279850 -90564006 + RLTR15 LTR ERVK 1 359 0 3 823 183 368 130 9 chr11 31279941 31280056 -90563800 + MIRb SINE MIR 88 216 -52 3 823 491 265 15 8 chr11 31282096 31282229 -90561627 - MER113 DNA MER1_type -79 442 309 3 823 1354 204 106 18 chr11 31282821 31283161 -90560695 - ORR1D1 LTR MaLR 0 374 5 3 823 1401 262 33 45 chr11 31283325 31283744 -90560112 + Lx8 LINE L1 6057 6470 -1003 3 823 2442 263 118 35 chr11 31284206 31285113 -90558743 + Lx8 LINE L1 6492 7473 0 3 823 236 210 154 85 chr11 31285237 31285367 -90558489 - MLT1A1 LTR MaLR 0 408 270 3 823 181 149 59 15 chr11 31285420 31285488 -90558368 + GA-rich Low_complexity Low_complexity 1 71 0 3 823 265 266 132 47 chr11 31285858 31286071 -90557785 - L1M2 LINE L1 -426 5865 5635 3 823 944 332 29 29 chr11 31286951 31287336 -90556520 + MLT2C1 LTR ERVL 1 385 -12 3 823 341 43 0 21 chr11 31287372 31287420 -90556436 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 3 823 275 300 96 43 chr11 31287517 31287632 -90556224 + MLT1A1 LTR MaLR 288 408 0 3 823 203 0 0 36 chr11 31289548 31289576 -90554280 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 823 551 89 15 0 chr11 31289614 31289700 -90554156 - B1_Mus2 SINE Alu 0 149 61 3 823 215 288 205 2 chr11 31290113 31290259 -90553597 + MIRm SINE MIR 3 167 -41 3 823 22 0 0 0 chr11 31290799 31290821 -90553035 + AT_rich Low_complexity Low_complexity 1 22 0 3 823 901 134 135 128 chr11 31290821 31291095 -90552761 - Lx5 LINE L1 -3 7047 6772 3 823 210 154 0 0 chr11 31291101 31291140 -90552716 + T-rich Low_complexity Low_complexity 2 40 0 3 823 663 246 81 32 chr11 31291300 31291524 -90552332 - L1MA5 LINE L1 -383 5917 5641 3 823 245 297 109 0 chr11 31291510 31291611 -90552245 + L1MA5 LINE L1 5910 6021 -279 3 823 479 227 72 13 chr11 31291642 31291794 -90552062 + L1MA5 LINE L1 6095 6255 -45 3 823 285 273 101 11 chr11 31291794 31291883 -90551973 - ID_B1 SINE B4 -97 127 31 3 823 215 352 57 76 chr11 31292725 31292789 -90551067 + MIR SINE MIR 34 103 -159 3 823 387 0 0 0 chr11 31292789 31292832 -90551024 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 823 532 214 194 39 chr11 31292834 31293014 -90550842 - B3 SINE B2 -7 209 2 3 823 224 300 102 2 chr11 31293014 31293103 -90550753 + MIRc SINE MIR 102 197 -71 3 823 534 31 0 0 chr11 31293695 31293759 -90550097 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 823 441 0 0 0 chr11 31293983 31294032 -90549824 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 823 376 260 37 52 chr11 31294056 31294190 -90549666 + MLT1A LTR MaLR 29 160 -214 3 823 192 240 20 20 chr11 31294650 31294701 -90549155 - MER5B DNA MER1_type -125 53 3 3 823 1241 162 10 0 chr11 31294916 31295114 -90548742 - B3 SINE B2 -15 201 2 3 823 1087 287 40 27 chr11 31295283 31295734 -90548122 - L1MA6 LINE L1 -17 6283 5827 3 823 257 213 0 0 chr11 31295796 31295843 -90548013 + MIR SINE MIR 97 143 -65 4 823 513 207 0 83 chr11 31295843 31295964 -90547892 + PB1D10 SINE Alu 5 115 -2 4 823 528 250 0 0 chr11 31297064 31297172 -90546684 + PB1D10 SINE Alu 1 108 -9 4 823 353 331 16 42 chr11 31297172 31297354 -90546502 + Charlie2b DNA MER1_type 2206 2383 -399 4 823 475 319 55 70 chr11 31297372 31297571 -90546285 + B3A SINE B2 3 198 0 4 823 296 256 105 173 chr11 31297555 31298023 -90545833 + Charlie2b DNA MER1_type 2326 2761 -21 4 823 207 150 0 70 chr11 31298034 31298077 -90545779 + L2c LINE L2 3323 3374 -13 4 823 710 120 248 0 chr11 31298155 31298288 -90545568 - URR1A DNA MER1_type 0 226 61 4 823 263 224 224 0 chr11 31298990 31299057 -90544799 - ID4_ SINE ID 0 83 2 4 823 917 151 177 0 chr11 31299202 31299388 -90544468 - URR1B DNA MER1_type -6 219 1 4 823 256 323 114 8 chr11 31300142 31300273 -90543583 + ORR1E LTR MaLR 1 145 -214 4 823 488 204 117 55 chr11 31300506 31300651 -90543205 - MLT1C LTR MaLR -311 156 3 4 823 571 250 0 17 chr11 31300846 31300964 -90542892 - PB1D10 SINE Alu 0 117 2 4 823 687 241 170 89 chr11 31301273 31301679 -90542177 + MLT1D LTR MaLR 55 493 -12 4 823 1582 235 183 37 chr11 31302071 31302557 -90541299 + RMER15 LTR ERVL 19 575 0 4 823 337 274 0 0 chr11 31303375 31303448 -90540408 + Cheshire DNA MER1_type 180 252 -2168 4 823 184 270 93 13 chr11 31303683 31303758 -90540098 + L2 LINE L2 673 753 -2666 4 823 243 0 0 0 chr11 31303819 31303846 -90540010 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 823 591 15 0 0 chr11 31303846 31303913 -90539943 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 823 307 312 62 42 chr11 31304319 31304463 -90539393 + MLT1L LTR MaLR 386 532 -78 4 823 2054 37 0 0 chr11 31304740 31304983 -90538873 + L1Md_A LINE L1 6340 6582 0 4 823 758 246 38 33 chr11 31306102 31306312 -90537544 - B3 SINE B2 -5 211 1 4 823 331 307 163 14 chr11 31307756 31307977 -90535879 - MLT1D LTR MaLR 0 505 252 4 823 542 213 0 49 chr11 31308563 31308746 -90535110 + CT-rich Low_complexity Low_complexity 5 178 0 4 823 204 188 0 0 chr11 31308748 31308780 -90535076 + C-rich Low_complexity Low_complexity 5 36 0 4 823 310 313 75 34 chr11 31308780 31308991 -90534865 - HAL1-3A_ME LINE L1 -420 2438 2285 4 823 263 148 0 36 chr11 31309005 31309061 -90534795 + C-rich Low_complexity Low_complexity 2 55 0 4 823 1025 89 0 48 chr11 31309064 31309253 -90534603 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 4 823 393 255 57 0 chr11 31309274 31309380 -90534476 - PB1D10 SINE Alu -5 112 1 4 823 711 217 46 77 chr11 31309552 31309747 -90534109 - B3A SINE B2 -9 189 1 4 823 619 155 27 9 chr11 31310334 31310445 -90533411 - RLTR13D3 LTR ERVK 0 1114 1002 4 823 417 157 122 11 chr11 31310549 31310639 -90533217 - MLT1I LTR MaLR 0 411 312 4 823 2667 79 172 7 chr11 31310643 31311062 -90532794 - RLTR13D3 LTR ERVK -114 1000 513 4 823 1146 122 60 3 chr11 31311037 31311260 -90532596 - RLTR13D3 LTR ERVK -576 230 1 4 823 445 261 54 9 chr11 31311359 31311471 -90532385 - MLT1I LTR MaLR 0 411 295 4 823 2050 218 30 74 chr11 31311896 31312435 -90531421 - RLTR20B3 LTR ERVK -42 535 21 4 823 437 307 93 0 chr11 31312857 31312997 -90530859 + MTEa LTR MaLR 218 370 -9 4 823 21 57 0 0 chr11 31313204 31313239 -90530617 + AT_rich Low_complexity Low_complexity 1 35 0 4 823 884 138 118 6 chr11 31313807 31313968 -90529888 + URR1A DNA MER1_type 48 226 0 4 823 264 269 56 37 chr11 31314251 31314359 -90529497 + MIR SINE MIR 44 153 -109 4 823 181 354 38 38 chr11 31314429 31314561 -90529295 - MIRb SINE MIR -136 132 1 4 823 23 54 0 0 chr11 31315433 31315470 -90528386 + AT_rich Low_complexity Low_complexity 1 37 0 4 823 448 332 87 24 chr11 31316038 31316245 -90527611 + B4A SINE B4 73 292 0 4 823 1645 26 0 0 chr11 31316733 31316925 -90526931 + MT2_Mm LTR ERVL 302 493 0 4 823 2811 143 29 4 chr11 31316936 31317391 -90526465 - RLTR17 LTR ERVK -226 466 1 4 823 1462 283 177 5 chr11 31317582 31318171 -90525685 - MER44D DNA MER2_type -6 699 10 4 823 564 231 33 28 chr11 31318190 31318346 -90525510 - ORR1D1 LTR MaLR -4 370 219 4 823 486 200 11 33 chr11 31318375 31318556 -90525300 + GA-rich Low_complexity Low_complexity 1 177 0 4 823 990 140 20 91 chr11 31318589 31318786 -90525070 - ORR1D1 LTR MaLR -191 183 1 4 823 224 333 53 30 chr11 31320289 31320422 -90523434 + L2 LINE L2 2502 2637 -782 4 823 494 248 78 60 chr11 31320424 31320656 -90523200 + MER44A DNA MER2_type 26 261 -78 4 823 269 260 0 94 chr11 31320830 31320915 -90522941 + MER5A DNA MER1_type 7 83 -106 4 823 414 0 0 0 chr11 31321143 31321189 -90522667 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 4 823 234 0 0 0 chr11 31321189 31321215 -90522641 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 823 531 278 33 46 chr11 31321225 31321376 -90522480 - B3A SINE B2 -48 150 2 4 823 477 228 66 34 chr11 31321376 31321505 -90522351 - MLT1A0 LTR MaLR -215 159 1 4 823 566 102 0 22 chr11 31321857 31321947 -90521909 - MTA_Mm LTR MaLR -104 292 205 4 823 989 106 0 7 chr11 31321933 31322076 -90521780 + MTA_Mm LTR MaLR 255 396 0 4 823 7667 86 6 71 chr11 31322076 31323250 -90520606 + MTA_Mm-int LTR MaLR 1 1098 0 4 823 3173 68 2 5 chr11 31323250 31323647 -90520209 + MTA_Mm LTR MaLR 1 396 0 4 823 280 283 100 0 chr11 31323708 31323828 -90520028 - L1MA5 LINE L1 -44 6256 6125 4 823 551 275 165 40 chr11 31323868 31324269 -90519587 + L1M2 LINE L1 4718 5168 -975 4 823 1187 91 6 0 chr11 31325054 31325229 -90518627 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 4 823 727 276 97 0 chr11 31325234 31325419 -90518437 - ID_B1 SINE B4 -21 203 1 4 823 305 303 37 68 chr11 31325680 31325818 -90518038 - MER103 DNA DNA -5 161 29 4 102 2901 78 10 15 chr11 31325818 31326220 -90517636 - MTB LTR MaLR 0 400 1 4 824 305 303 37 68 chr11 31326220 31326244 -90517612 - MER103 DNA DNA -138 28 5 4 824 634 309 50 13 chr11 31326374 31326672 -90517184 + RMER16-int LTR ERVK 4724 5032 -374 4 824 324 244 92 78 chr11 31326860 31327002 -90516854 + RMER16-int LTR ERVK 6387 6510 -32 4 824 1322 241 93 47 chr11 31327736 31328122 -90515734 + MTD LTR MaLR 1 403 -16 4 824 524 302 22 0 chr11 31328346 31328485 -90515371 - B1F1 SINE Alu -7 142 1 4 824 258 208 0 0 chr11 31328534 31328582 -90515274 - L1MC4a LINE L1 -229 7653 7606 4 824 829 189 213 0 chr11 31328671 31328840 -90515016 - B3 SINE B2 -11 205 1 4 824 901 259 15 15 chr11 31328905 31329101 -90514755 + B3 SINE B2 1 196 -20 4 824 500 226 170 94 chr11 31330153 31330495 -90513361 - RLTR9A LTR ERVK 0 368 1 4 824 198 68 67 22 chr11 31330507 31330552 -90513304 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 824 323 311 16 39 chr11 31330645 31330772 -90513084 - IAP-d-int LTR ERVK -31 6511 6388 4 824 661 317 15 11 chr11 31330905 31331173 -90512683 - RLTR6-int LTR ERV1 -123 7655 7387 4 824 15112 99 46 18 chr11 31331168 31333472 -90510384 - RMER16-int LTR ERVK -1068 4338 1972 4 824 1419 23 0 0 chr11 31333472 31333648 -90510208 - B2_Mm1a SINE B2 -5 188 13 4 824 2590 115 3 5 chr11 31333649 31334024 -90509832 - RMER16-int LTR ERVK -3463 1943 1570 4 824 531 112 0 0 chr11 31334039 31334119 -90509737 + (T)n Simple_repeat Simple_repeat 1 80 0 4 824 332 286 30 28 chr11 31334332 31334607 -90509249 - RMER16-int LTR ERVK -5767 2450 2147 4 824 344 219 12 47 chr11 31334760 31334846 -90509010 - RLTR45-int LTR ERVK -3683 3561 3479 4 824 1859 178 25 31 chr11 31334851 31335205 -90508651 - RMER16-int LTR ERVK -3898 1508 1157 4 824 3820 54 124 14 chr11 31335205 31335711 -90508145 - LTRIS2 LTR ERV1 0 564 3 4 824 1045 213 34 4 chr11 31335722 31335958 -90507898 - RLTR1B-int LTR ERV1 -33 5030 4788 4 824 1232 284 38 11 chr11 31336040 31336406 -90507450 - RLTR1B-int LTR ERV1 -944 4119 3744 4 824 5207 152 107 20 chr11 31336405 31337974 -90505882 - RLTR1B-int LTR ERV1 -1390 1909 760 4 824 3466 103 21 2 chr11 31338065 31338542 -90505314 - RMER16-int LTR ERVK -4218 1188 703 4 824 567 0 0 0 chr11 31338543 31338606 -90505250 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 824 776 160 151 13 chr11 31338606 31338758 -90505098 - RMER16-int LTR ERVK -5093 313 141 4 824 269 263 94 55 chr11 31338745 31338946 -90504910 - MuRRS4-int LTR ERV1 -4675 388 180 4 824 1126 122 78 18 chr11 31339105 31339323 -90504533 - RLTR1B-int LTR ERV1 -3006 293 63 4 824 252 234 25 75 chr11 31339352 31339472 -90504384 - RLTR1B-int LTR ERV1 -3584 114 1 4 824 3846 54 125 12 chr11 31339472 31339977 -90503879 - LTRIS2 LTR ERV1 0 564 3 4 824 3741 117 89 19 chr11 31339996 31340639 -90503217 - RMER16-int LTR ERVK -4247 1159 472 4 824 537 119 0 0 chr11 31340704 31340805 -90503051 + (TC)n Simple_repeat Simple_repeat 1 101 0 4 824 356 246 42 112 chr11 31340964 31341179 -90502677 - RMER16-int LTR ERVK -3068 246 47 4 824 286 150 15 77 chr11 31341228 31341293 -90502563 - RLTR9A LTR ERVK -307 61 1 4 824 295 250 54 60 chr11 31341670 31341819 -90502037 - MERVK26-int LTR ERVK -2051 4868 4721 4 824 748 294 11 48 chr11 31344145 31344413 -90499443 - RLTR20D LTR ERVK 0 568 311 4 824 1299 185 102 42 chr11 31344459 31344973 -90498883 - MYSERV16_I-int LTR ERVK -1505 821 277 4 824 914 244 14 73 chr11 31344982 31345326 -90498530 - RMER3D-int LTR ERVK -1464 1378 1055 4 824 1278 255 98 25 chr11 31345853 31345945 -90497911 - RLTR16 LTR ERVK 0 505 415 4 824 522 0 0 0 chr11 31345945 31346003 -90497853 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 824 1278 255 98 25 chr11 31346003 31346241 -90497615 - RLTR16 LTR ERVK -91 414 152 4 824 542 12 58 12 chr11 31346241 31346327 -90497529 + (CAAAA)n Simple_repeat Simple_repeat 2 91 0 4 824 1278 255 98 25 chr11 31346327 31346466 -90497390 - RLTR16 LTR ERVK -354 151 4 4 824 2343 118 38 57 chr11 31347447 31347923 -90495933 - IAPLTR2_Mm LTR ERVK -8 467 1 4 824 58270 19 8 2 chr11 31347923 31354362 -90489494 - IAPEz-int LTR ERVK 0 6481 1 4 824 2330 120 38 57 chr11 31354363 31354839 -90489017 - IAPLTR2_Mm LTR ERVK -8 467 1 4 824 608 156 0 13 chr11 31355205 31355434 -90488422 + T-rich Low_complexity Low_complexity 1 225 0 4 824 27770 79 69 10 chr11 31355438 31356713 -90487143 - L1_Mus3 LINE L1 -6 6632 5236 4 824 270 0 0 0 chr11 31356713 31356743 -90487113 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 824 27770 125 27 35 chr11 31356743 31357054 -90486802 - L1_Mus3 LINE L1 -648 5235 4942 4 824 854 53 0 0 chr11 31357054 31357167 -90486689 + B1_Mus1 SINE Alu 36 148 0 4 824 27770 125 27 35 chr11 31357167 31357380 -90486476 - L1_Mus3 LINE L1 -648 4941 4739 4 824 186 43 0 0 chr11 31357380 31357403 -90486453 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 824 27770 136 30 30 chr11 31357403 31361543 -90482313 - L1_Mus3 LINE L1 -1145 4738 571 4 824 660 246 80 0 chr11 31361625 31361800 -90482056 - L1MC4a LINE L1 -928 6954 6766 4 824 500 70 0 0 chr11 31361827 31361898 -90481958 + MusHAL1 LINE L1 208 278 -2434 4 824 305 243 102 9 chr11 31362221 31362329 -90481527 - L1MC4a LINE L1 -913 7129 7012 4 824 324 309 191 0 chr11 31362329 31362481 -90481375 - MER2 DNA MER2_type -1 344 164 4 824 628 246 84 0 chr11 31362536 31362739 -90481117 - L1MC4a LINE L1 -897 6985 6766 4 824 591 228 96 0 chr11 31363456 31363592 -90480264 - B1_Mur2 SINE Alu 0 149 1 4 824 250 304 57 0 chr11 31363601 31363694 -90480162 - B1F1 SINE Alu -9 108 2 4 824 818 278 0 9 chr11 31364520 31364745 -90479111 - Tigger7 DNA MER2_type -10 2481 2259 5 824 230 232 204 43 chr11 31365008 31365170 -90478686 - LTR50 LTR ERVL -457 338 151 5 824 575 347 45 0 chr11 31365232 31365477 -90478379 - MER2 DNA MER2_type -2 343 88 5 824 520 376 19 5 chr11 31366153 31366367 -90477489 - Tigger5 DNA MER2_type -2186 220 4 5 824 504 0 0 0 chr11 31366590 31366646 -90477210 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 824 387 274 28 69 chr11 31367072 31367217 -90476639 - MER102b DNA MER1_type -106 235 97 5 824 549 30 0 0 chr11 31369426 31369493 -90474363 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 824 1272 238 104 16 chr11 31369830 31370274 -90473582 - L1MA6 LINE L1 -10 6290 5808 5 824 466 342 140 10 chr11 31371606 31371898 -90471958 + Tigger7 DNA MER2_type 18 347 -2144 5 824 287 352 22 0 chr11 31372014 31372153 -90471703 + Tigger7 DNA MER2_type 2328 2469 -22 5 824 1075 127 144 20 chr11 31372157 31372358 -90471498 + URR1A DNA MER1_type 1 226 0 5 824 477 0 0 0 chr11 31374264 31374317 -90469539 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 824 370 212 40 20 chr11 31374344 31374445 -90469411 - RSINE1 SINE B4 -57 108 6 5 824 25 83 0 0 chr11 31374463 31374523 -90469333 + AT_rich Low_complexity Low_complexity 1 60 0 5 824 971 103 0 14 chr11 31374551 31374698 -90469158 - B1_Mur4 SINE Alu 0 150 6 5 824 1004 83 0 7 chr11 31375596 31375741 -90468115 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 5 824 449 302 108 64 chr11 31376316 31376659 -90467197 + Lx8 LINE L1 7113 7470 -3 5 824 227 276 56 19 chr11 31376829 31376936 -90466920 + MIRm SINE MIR 164 274 -2 5 824 183 328 31 15 chr11 31377010 31377075 -90466781 + MIR SINE MIR 87 152 -56 5 824 357 24 0 0 chr11 31377475 31377517 -90466339 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 824 463 239 0 0 chr11 31377542 31377634 -90466222 - RSINE1 SINE B4 -70 95 4 5 824 273 250 98 20 chr11 31379163 31379265 -90464591 - MER103 DNA DNA -48 118 9 5 824 293 212 132 36 chr11 31380081 31380164 -90463692 + MLT1J LTR MaLR 238 328 -184 5 824 251 169 51 0 chr11 31380584 31380643 -90463213 + GA-rich Low_complexity Low_complexity 3 64 0 5 824 194 0 39 0 chr11 31381293 31381319 -90462537 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 824 477 34 0 0 chr11 31382212 31382271 -90461585 + (CATA)n Simple_repeat Simple_repeat 1 59 0 5 824 474 118 0 0 chr11 31382727 31382820 -90461036 + (T)n Simple_repeat Simple_repeat 1 93 0 5 824 700 118 25 16 chr11 31383189 31383310 -90460546 + B2_Mm2 SINE B2 1 122 -73 5 824 248 88 52 17 chr11 31383372 31383430 -90460426 + GA-rich Low_complexity Low_complexity 2 61 0 5 824 431 314 148 34 chr11 31383958 31384195 -90459661 - MER70B LTR ERVL -306 272 9 5 824 585 0 0 0 chr11 31385030 31385095 -90458761 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 824 568 282 167 7 chr11 31385175 31385450 -90458406 - MLT1B LTR MaLR -52 338 20 5 824 649 117 0 172 chr11 31386688 31386822 -90457034 + L1_Mus3 LINE L1 464 574 -6064 5 824 26440 114 40 13 chr11 31386811 31392363 -90451493 + L1_Mus3 LINE L1 945 6630 -8 5 824 4070 191 67 66 chr11 31392371 31393387 -90450469 - MYSERV6-int LTR ERVK -54 8905 7627 5 824 471 35 0 0 chr11 31393387 31393444 -90450412 + (TATG)n Simple_repeat Simple_repeat 3 59 0 5 824 4070 177 114 20 chr11 31393444 31393573 -90450283 - MYSERV6-int LTR ERVK -1043 7916 7849 5 824 204 267 0 32 chr11 31393580 31393642 -90450214 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 5 824 705 286 0 0 chr11 31393644 31393798 -90450058 - RSINE1 SINE B4 0 165 12 5 824 489 293 232 25 chr11 31393800 31394119 -90449737 - L1M2 LINE L1 -478 5822 5438 5 824 1446 312 117 9 chr11 31394199 31395057 -90448799 - L1M2 LINE L1 -820 5323 4374 5 824 345 325 90 53 chr11 31395093 31395337 -90448519 - B4 SINE B4 -4 288 36 5 824 663 201 0 0 chr11 31395490 31395649 -90448207 + (CA)n Simple_repeat Simple_repeat 2 160 0 5 824 2852 185 78 19 chr11 31396134 31396758 -90447098 - Lx9 LINE L1 -10 7634 6974 5 824 1781 152 77 8 chr11 31396760 31397125 -90446731 - ORR1B1 LTR MaLR -4 390 1 5 824 3438 203 97 23 chr11 31397125 31397921 -90445935 - Lx9 LINE L1 -664 6980 6126 5 824 2570 118 5 8 chr11 31398216 31398599 -90445257 + RLTR14 LTR ERV1 1 382 0 5 824 738 284 19 5 chr11 31398741 31398946 -90444910 - MTEb LTR MaLR -4 375 168 5 824 858 20 0 0 chr11 31400387 31400487 -90443369 + (TAAAA)n Simple_repeat Simple_repeat 2 101 0 5 824 858 301 85 73 chr11 31401151 31401702 -90442154 - L1MB4 LINE L1 -33 6147 5590 5 824 200 268 7 0 chr11 31401871 31402013 -90441843 + (CA)n Simple_repeat Simple_repeat 2 144 0 5 824 303 140 0 0 chr11 31402033 31402083 -90441773 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 5 824 336 148 0 0 chr11 31402081 31402142 -90441714 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 824 200 154 0 19 chr11 31402972 31403025 -90440831 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 824 495 0 0 0 chr11 31403056 31403111 -90440745 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 824 270 0 0 0 chr11 31403111 31403140 -90440716 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 824 230 150 16 32 chr11 31404531 31404593 -90439263 + A-rich Low_complexity Low_complexity 6 66 0 5 824 48 0 0 0 chr11 31404851 31404899 -90438957 + AT_rich Low_complexity Low_complexity 1 48 0 5 824 466 292 79 18 chr11 31404949 31405113 -90438743 - B3A SINE B2 -22 176 3 5 824 17644 118 47 1 chr11 31405123 31408355 -90435501 - L1_Mus3 LINE L1 -5 6633 3254 5 824 6924 84 34 2 chr11 31408381 31409770 -90434086 - L1_Mus2 LINE L1 -2 6564 5136 5 824 631 120 50 0 chr11 31409763 31409863 -90433993 - L1_Mus3 LINE L1 -577 6061 5957 5 824 713 47 0 0 chr11 31409848 31409934 -90433922 - L1_Mm LINE L1 -384 5499 5414 5 824 4087 96 3 0 chr11 31409936 31410500 -90433356 + L1_Mm LINE L1 4885 5450 -433 5 824 6608 61 0 11 chr11 31410510 31411351 -90432505 - L1Md_F2 LINE L1 0 6582 5751 5 824 29939 151 29 22 chr11 31411407 31413388 -90430468 + L1_Mus3 LINE L1 379 2348 -3535 5 824 200 35 35 0 chr11 31413388 31413417 -90430439 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 824 29939 112 13 8 chr11 31413417 31417661 -90426195 + L1_Mus3 LINE L1 2349 6638 0 5 824 4213 102 154 96 chr11 31420358 31421214 -90422642 + RMER17A2 LTR ERVK 1 906 0 5 824 225 278 55 14 chr11 31421705 31421778 -90422078 - MIRc SINE MIR -80 188 113 5 824 261 0 0 0 chr11 31422868 31422897 -90420959 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 824 414 79 0 0 chr11 31422901 31422964 -90420892 + (TTGG)n Simple_repeat Simple_repeat 2 64 0 5 824 225 331 85 23 chr11 31423469 31423599 -90420257 - MIR SINE MIR -117 145 8 5 824 351 113 0 0 chr11 31423732 31423785 -90420071 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 824 205 240 0 57 chr11 31424185 31424291 -90419565 + (CAGTA)n Simple_repeat Simple_repeat 2 101 0 5 824 322 253 35 24 chr11 31424623 31424708 -90419148 + B4A SINE B4 12 97 -195 5 824 805 147 112 138 chr11 31424711 31424971 -90418885 + MTC LTR MaLR 1 253 -168 5 824 268 357 16 6 chr11 31425045 31425174 -90418682 + L2b LINE L2 3238 3369 -57 5 824 284 328 57 28 chr11 31425563 31425739 -90418117 + MER2 DNA MER2_type 163 343 -2 5 824 9938 115 18 9 chr11 31425756 31427274 -90416582 - Lx2B LINE L1 -983 4894 3362 5 824 5819 135 18 20 chr11 31427271 31428527 -90415329 + Lx2B LINE L1 4973 6215 -785 5 824 2230 129 3 3 chr11 31428527 31428854 -90415002 + ORR1A2 LTR MaLR 1 327 0 5 824 3738 157 32 35 chr11 31428854 31428938 -90414918 + Lx2B LINE L1 6216 6298 -702 5 824 2833 192 45 6 chr11 31428951 31429486 -90414370 + Lx2B LINE L1 6445 7000 0 5 824 502 106 12 24 chr11 31429512 31429608 -90414248 - ORR1D2 LTR MaLR -262 97 3 5 824 1099 126 86 0 chr11 31430549 31430723 -90413133 + B2_Mm2 SINE B2 1 189 -6 5 824 285 298 10 31 chr11 31430831 31430928 -90412928 - MLT1A1 LTR MaLR -12 396 302 5 824 209 323 0 0 chr11 31432595 31432657 -90411199 + CT-rich Low_complexity Low_complexity 4 65 0 5 824 512 198 14 102 chr11 31432900 31433008 -90410848 + B3 SINE B2 50 159 -57 5 824 1137 270 61 33 chr11 31433013 31433404 -90410452 + Lx8 LINE L1 7041 7442 -31 5 824 5113 117 19 32 chr11 31433417 31434681 -90409175 + L1Md_F LINE L1 238 1484 -4399 5 824 554 276 47 16 chr11 31434681 31434810 -90409046 + ETnERV2-int LTR ERVK 7070 7202 -204 5 824 30436 77 7 5 chr11 31435200 31439301 -90404555 + L1Md_F2 LINE L1 1478 5586 -297 5 824 7777 59 11 9 chr11 31439302 31440286 -90403570 + L1Md_F2 LINE L1 5588 6573 -9 5 824 22 35 0 0 chr11 31440313 31440342 -90403514 + AT_rich Low_complexity Low_complexity 1 29 0 5 824 234 0 0 0 chr11 31440675 31440701 -90403155 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 824 876 59 0 0 chr11 31440706 31440825 -90403031 - B1_Mus1 SINE Alu -29 119 1 5 824 1652 201 30 28 chr11 31440824 31440861 -90402995 - ORR1D1 LTR MaLR -2 372 343 5 824 3439 199 92 53 chr11 31440861 31441731 -90402125 + RMER13B LTR ERVK 1 904 -4 5 824 1652 201 30 28 chr11 31441731 31442056 -90401800 - ORR1D1 LTR MaLR -32 342 9 5 824 195 298 18 0 chr11 31443406 31443463 -90400393 + MIRm SINE MIR 50 107 -169 5 824 289 283 66 51 chr11 31443947 31444116 -90399740 - MIRb SINE MIR -83 185 6 5 824 805 264 50 55 chr11 31445549 31445910 -90397946 + RLTR10D LTR ERVK 1 359 0 5 824 522 220 17 0 chr11 31445955 31446073 -90397783 + IAP-d-int LTR ERVK 22 141 -6401 5 824 8295 270 19 35 chr11 31446099 31448795 -90395061 + IAP-d-int LTR ERVK 3148 5800 -742 5 824 1524 201 22 28 chr11 31448813 31449338 -90394518 + IAP-d-int LTR ERVK 5910 6542 0 5 824 743 265 58 58 chr11 31449338 31449682 -90394174 + RLTR10D LTR ERVK 1 344 -15 5 824 625 292 123 12 chr11 31450165 31450570 -90393286 + L1MB3 LINE L1 5617 6066 -117 5 824 441 0 0 0 chr11 31450604 31450653 -90393203 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 824 281 208 0 13 chr11 31450665 31450743 -90393113 + GA-rich Low_complexity Low_complexity 6 82 0 5 824 180 0 0 0 chr11 31451837 31451857 -90391999 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 824 281 117 0 16 chr11 31452366 31452427 -90391429 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 5 824 933 149 0 0 chr11 31452427 31452575 -90391281 - B1_Mur3 SINE Alu -1 148 1 5 824 252 200 0 0 chr11 31454918 31454978 -90388878 + GA-rich Low_complexity Low_complexity 1 60 0 5 824 657 0 0 0 chr11 31456059 31456132 -90387724 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 824 591 15 0 0 chr11 31456864 31456932 -90386924 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 824 477 0 0 0 chr11 31457115 31457168 -90386688 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 825 1371 271 111 16 chr11 31457478 31457966 -90385890 - RMER5 LTR ERV1 0 534 1 6 825 1300 108 11 0 chr11 31458416 31458602 -90385254 - B2_Mm1a SINE B2 -4 189 2 6 825 699 256 6 0 chr11 31459419 31459583 -90384273 + B3 SINE B2 1 165 -51 6 825 216 0 0 0 chr11 31459602 31459626 -90384230 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 825 410 264 95 0 chr11 31459992 31460140 -90383716 - MLT1A1 LTR MaLR 0 408 247 6 825 315 0 0 0 chr11 31461160 31461195 -90382661 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 825 528 81 0 0 chr11 31463457 31463531 -90380325 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 825 372 22 0 0 chr11 31463533 31463578 -90380278 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 825 231 286 0 0 chr11 31463704 31463767 -90380089 + CT-rich Low_complexity Low_complexity 2 64 0 6 825 210 150 0 0 chr11 31465107 31465147 -90378709 + (T)n Simple_repeat Simple_repeat 1 40 0 6 825 241 183 148 79 chr11 31466678 31466779 -90377077 + MTEa LTR MaLR 267 374 -5 6 825 393 294 92 21 chr11 31467903 31468143 -90375713 + L1MC3 LINE L1 6910 7166 -619 6 825 405 214 0 23 chr11 31468701 31468787 -90375069 - ID_B1 SINE B4 0 224 141 6 825 321 211 127 0 chr11 31468879 31468950 -90374906 + ID4_ SINE ID 2 81 -2 6 825 816 272 83 9 chr11 31468962 31469310 -90374546 + L1M2 LINE L1 2969 3342 -2801 6 825 1321 234 106 19 chr11 31469333 31469447 -90374409 + L1_Mur3 LINE L1 3637 3755 -2125 6 825 1137 54 0 26 chr11 31469447 31469598 -90374258 + B1_Mus1 SINE Alu 1 147 -1 6 825 1321 234 106 19 chr11 31469598 31469954 -90373902 + L1_Mur3 LINE L1 3756 4148 -1732 6 825 490 252 66 16 chr11 31469955 31470076 -90373780 - B4 SINE B4 -76 216 90 6 825 520 272 8 39 chr11 31470074 31470204 -90373652 - B4 SINE B4 -165 127 2 6 825 2066 309 83 51 chr11 31470209 31470986 -90372870 + L1_Mur3 LINE L1 4226 5044 -836 6 825 1213 91 46 41 chr11 31470986 31471180 -90372676 - B2_Mm2 SINE B2 0 195 1 6 825 2066 309 83 51 chr11 31471180 31471816 -90372040 + L1_Mur3 LINE L1 5045 5685 -195 6 825 349 305 0 0 chr11 31471850 31471955 -90371901 + L1MA4A LINE L1 5823 5927 -376 6 825 289 319 62 28 chr11 31472259 31472404 -90371452 - MER2 DNA MER2_type -96 249 100 6 825 225 312 11 21 chr11 31472905 31473000 -90370856 + MER2 DNA MER2_type 95 188 -157 6 825 241 320 29 29 chr11 31473867 31473970 -90369886 + MLT1A1 LTR MaLR 306 408 0 6 825 549 286 79 71 chr11 31474059 31474350 -90369506 - L1ME3A LINE L1 0 6173 5870 6 825 1304 59 47 0 chr11 31474350 31474520 -90369336 - B2_Mm2 SINE B2 -14 181 4 6 825 549 286 79 71 chr11 31474520 31474635 -90369221 - L1ME3A LINE L1 -304 5869 5764 6 825 243 311 0 0 chr11 31474658 31474719 -90369137 - tRNA-Ala-GCY_ tRNA tRNA -13 62 2 6 825 279 228 12 25 chr11 31474836 31474917 -90368939 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 6 825 240 294 110 13 chr11 31474957 31475112 -90368744 - L1ME3A LINE L1 -446 5727 5558 6 825 249 103 26 0 chr11 31475207 31475246 -90368610 - L1ME3A LINE L1 -771 5423 5384 6 825 344 292 0 0 chr11 31475520 31475691 -90368165 + GA-rich Low_complexity Low_complexity 2 172 0 6 825 183 80 0 0 chr11 31476039 31476064 -90367792 + (AGGGGG)n Simple_repeat Simple_repeat 1 25 0 6 825 25 31 0 0 chr11 31476352 31476384 -90367472 + AT_rich Low_complexity Low_complexity 1 32 0 6 825 1025 284 154 33 chr11 31476484 31477177 -90366679 + L1M5 LINE L1 2382 3158 -2988 6 825 429 310 143 0 chr11 31477210 31477413 -90366443 + Lx8 LINE L1 6629 6860 -613 6 825 382 344 44 93 chr11 31477471 31477967 -90365889 + Lx8 LINE L1 7001 7472 -1 6 825 214 213 21 0 chr11 31478004 31478051 -90365805 + GA-rich Low_complexity Low_complexity 2 49 0 6 825 722 296 79 47 chr11 31478171 31478678 -90365178 + L1M5 LINE L1 3426 3948 -2198 6 825 448 253 64 40 chr11 31478712 31478854 -90365002 + B4A SINE B4 116 259 -33 6 825 233 0 62 0 chr11 31478854 31478886 -90364970 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 6 825 448 253 64 40 chr11 31478886 31478916 -90364940 + B4A SINE B4 260 292 0 6 825 397 312 72 45 chr11 31478923 31479255 -90364601 + L1M5 LINE L1 3926 4266 -1880 6 825 333 252 59 59 chr11 31479374 31479492 -90364364 + L1M5 LINE L1 4457 4574 -1572 6 825 380 191 135 0 chr11 31479504 31479593 -90364263 + RSINE1 SINE B4 32 132 -33 6 825 369 0 0 0 chr11 31479595 31479636 -90364220 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 825 543 264 22 54 chr11 31479639 31479823 -90364033 - L1_Mur3 LINE L1 -3026 2854 2677 6 825 360 0 0 0 chr11 31480071 31480111 -90363745 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 825 255 324 108 10 chr11 31480162 31480426 -90363430 - L1_Mur3 LINE L1 -3347 2533 2254 6 825 396 0 0 0 chr11 31480640 31480684 -90363172 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 825 708 175 41 14 chr11 31480696 31480841 -90363015 - B3 SINE B2 -67 149 1 6 825 1334 276 151 56 chr11 31480869 31481782 -90362074 - L1MEc LINE L1 -5243 1157 158 6 825 984 257 105 19 chr11 31481795 31482156 -90361700 + MLT1A1 LTR MaLR 1 392 -16 6 825 213 189 0 0 chr11 31482558 31482595 -90361261 + C-rich Low_complexity Low_complexity 1 37 0 6 825 730 33 0 0 chr11 31482758 31482850 -90361006 - RLTR9D LTR ERVK -311 92 1 6 825 373 178 14 0 chr11 31482851 31482924 -90360932 - ETnERV2-int LTR ERVK -2 7404 7331 6 825 5057 102 24 0 chr11 31484152 31484860 -90358996 + L1VL4 LINE L1 193 917 -5385 6 825 4822 96 3 6 chr11 31484855 31485526 -90358330 - L1_Mm LINE L1 -276 5607 4939 6 825 4330 78 33 5 chr11 31485526 31486103 -90357753 + L1_Mus2 LINE L1 5973 6565 -1 6 825 19666 150 137 8 chr11 31486105 31490851 -90353005 + Lx LINE L1 1254 6654 0 6 825 254 313 46 53 chr11 31490904 31491167 -90352689 + L1M5 LINE L1 2744 3004 -3142 6 825 1058 215 24 10 chr11 31492728 31492935 -90350921 + B3 SINE B2 5 214 -2 6 825 208 254 152 34 chr11 31493405 31493523 -90350333 + MIRb SINE MIR 97 228 -40 6 825 216 149 0 0 chr11 31494481 31494528 -90349328 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 6 825 278 316 25 0 chr11 31495529 31495608 -90348248 + MER103 DNA DNA 4 84 -82 6 825 223 261 94 17 chr11 31495867 31495984 -90347872 + MIRb SINE MIR 44 169 -99 6 825 2710 42 2 150 chr11 31496433 31496886 -90346970 - RLTR10 LTR ERVK -4 386 1 6 825 8925 20 1 0 chr11 31496888 31497882 -90345974 - RLTR10-int LTR ERVK -3 1984 990 6 825 328 256 62 39 chr11 31497964 31498094 -90345762 - RLTR10-int LTR ERVK -5987 1594 1462 6 825 4438 38 1 2 chr11 31498158 31499044 -90344812 - RLTR10-int LTR ERVK -989 998 41 6 825 2764 44 2 117 chr11 31499060 31499496 -90344360 - RLTR10 LTR ERVK -4 386 1 6 825 423 0 0 0 chr11 31500049 31500096 -90343760 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 825 2657 118 48 16 chr11 31500185 31500624 -90343232 + RLTR11B LTR ERVK 1 453 0 2 825 927 227 5 32 chr11 31500640 31500827 -90343029 + B3A SINE B2 1 182 -16 3 825 255 240 147 62 chr11 31502446 31502575 -90341281 + MLT1A1 LTR MaLR 240 408 0 4 825 575 238 58 0 chr11 31502578 31502750 -90341106 - L1MB5 LINE L1 -156 6018 5837 5 825 198 0 0 0 chr11 31503220 31503242 -90340614 + (A)n Simple_repeat Simple_repeat 1 22 0 6 825 623 24 0 35 chr11 31503726 31503812 -90340044 + (TTTTG)n Simple_repeat Simple_repeat 2 84 0 7 825 647 249 50 95 chr11 31503814 31504036 -90339820 + B4 SINE B4 12 223 -69 8 825 824 299 88 6 chr11 31504736 31504972 -90338884 + L1M2 LINE L1 5218 5470 -821 9 825 450 0 0 0 chr11 31504972 31505022 -90338834 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 825 824 291 107 8 chr11 31505022 31505216 -90338640 + L1M2 LINE L1 5471 5689 -602 9 825 835 280 9 87 chr11 31505229 31505550 -90338306 - MTD LTR MaLR -123 296 1 1 825 831 10 0 0 chr11 31505698 31505794 -90338062 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 825 426 370 37 15 chr11 31506392 31506661 -90337195 - MamSINE1 SINE tRNA 0 290 16 1 825 361 228 112 46 chr11 31506736 31506888 -90336968 - MIRb SINE MIR -83 185 24 1 825 253 284 67 11 chr11 31508790 31508879 -90334977 - MER5A DNA MER1_type -26 163 70 1 825 189 231 70 84 chr11 31509857 31509928 -90333928 + MIR SINE MIR 23 92 -116 1 825 531 0 0 0 chr11 31510086 31510145 -90333711 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 825 449 299 80 30 chr11 31510414 31510614 -90333242 + MLT1I LTR MaLR 1 210 -201 1 825 385 278 45 6 chr11 31510939 31511116 -90332740 + MER113 DNA MER1_type 264 447 -74 1 825 7266 82 25 5 chr11 31511556 31513319 -90330537 + L1_Mus3 LINE L1 4834 6638 0 2 825 935 162 15 0 chr11 31513410 31513740 -90330116 + (TG)n Simple_repeat Simple_repeat 1 335 0 2 825 261 316 96 56 chr11 31513913 31514091 -90329765 + MLT1I LTR MaLR 263 447 -148 1 825 25 31 0 0 chr11 31515415 31515447 -90328409 + AT_rich Low_complexity Low_complexity 1 32 0 2 825 215 358 24 24 chr11 31515921 31516004 -90327852 - MIRc SINE MIR -144 124 42 2 825 210 333 0 0 chr11 31516746 31516806 -90327050 + ID SINE ID 30 89 -135 2 825 265 322 111 43 chr11 31517278 31517440 -90326416 + MIRb SINE MIR 55 227 -41 2 825 1119 124 0 0 chr11 31517542 31517719 -90326137 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2 825 183 114 0 0 chr11 31517719 31517754 -90326102 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2 825 399 263 131 65 chr11 31517772 31517971 -90325885 + MER47B DNA MER2_type 36 247 -171 2 825 512 212 205 6 chr11 31518116 31518287 -90325569 - ID_B1 SINE B4 -18 206 2 2 825 201 121 0 0 chr11 31518812 31518845 -90325011 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 3 825 238 221 23 23 chr11 31520624 31520712 -90323144 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 3 825 414 0 0 0 chr11 31520757 31520803 -90323053 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 825 183 260 39 64 chr11 31521319 31521397 -90322459 - L2 LINE L2 -1459 1960 1885 3 825 1292 97 11 0 chr11 31521686 31521862 -90321994 - B2_Mm1t SINE B2 -14 179 2 3 825 2615 23 0 13 chr11 31522159 31522468 -90321388 - L1Md_F2 LINE L1 -8 6574 6270 3 825 349 240 94 0 chr11 31522479 31522575 -90321281 - MER2 DNA MER2_type -119 226 122 3 825 411 361 87 0 chr11 31522798 31522981 -90320875 - MLT1F1 LTR MaLR -305 264 66 3 825 327 320 10 0 chr11 31523114 31523217 -90320639 - MER20 DNA MER1_type -89 130 27 3 825 793 248 28 32 chr11 31523946 31524163 -90319693 - B3 SINE B2 0 216 1 3 825 692 300 69 127 chr11 31524333 31524665 -90319191 + MLT1C LTR MaLR 46 376 -91 4 825 744 43 0 0 chr11 31524665 31524757 -90319099 + (TC)n Simple_repeat Simple_repeat 2 93 0 4 825 692 300 69 127 chr11 31524757 31524776 -90319080 + MLT1C LTR MaLR 377 378 -89 4 825 4949 168 37 14 chr11 31524776 31525639 -90318217 - Lx5 LINE L1 0 7050 6168 4 825 692 300 69 127 chr11 31525639 31525679 -90318177 + MLT1C LTR MaLR 379 415 -52 4 825 760 306 63 27 chr11 31525688 31525910 -90317946 + MER44D DNA MER2_type 3 232 -473 4 825 273 29 0 0 chr11 31525951 31525985 -90317871 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 825 316 274 27 0 chr11 31526048 31526121 -90317735 + MER44D DNA MER2_type 626 700 -5 4 825 232 321 9 0 chr11 31526221 31526333 -90317523 - HAL1 LINE L1 -845 1662 1550 4 825 268 273 61 0 chr11 31526359 31526425 -90317431 + PB1D10 SINE Alu 38 107 -10 4 825 664 193 31 6 chr11 31526653 31526812 -90317044 - B1F2 SINE Alu 0 311 3 4 825 186 366 14 0 chr11 31527699 31527770 -90316086 - L4 LINE RTE 0 2029 1958 4 825 497 313 42 53 chr11 31527975 31528164 -90315692 - MER2 DNA MER2_type -51 294 108 4 825 462 114 0 0 chr11 31529279 31529367 -90314489 + (TG)n Simple_repeat Simple_repeat 2 89 0 5 825 380 342 79 36 chr11 31530369 31530621 -90313235 - MER20B DNA MER1_type -342 441 179 5 825 259 370 81 48 chr11 31532017 31532227 -90311629 + MamRep38 DNA hAT 6 222 -73 5 825 1772 151 39 3 chr11 31532803 31533109 -90310747 + ORR1B1 LTR MaLR 1 317 -77 5 825 6544 66 1 18 chr11 31533109 31533999 -90309857 + RLTR13A3 LTR ERVK 1 978 0 5 825 551 57 0 0 chr11 31534003 31534073 -90309783 + ORR1B1 LTR MaLR 317 386 -8 5 825 279 0 0 0 chr11 31534169 31534200 -90309656 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 825 326 209 0 29 chr11 31534765 31534834 -90309022 - RSINE1 SINE B4 -16 149 83 5 825 279 267 50 17 chr11 31534894 31535029 -90308827 - RSINE1 SINE B4 -152 140 3 5 825 232 343 21 21 chr11 31535336 31535476 -90308380 - L1MB8 LINE L1 0 6178 6039 5 825 547 169 0 0 chr11 31535674 31535763 -90308093 - RLTR42 LTR ERVK 0 239 151 6 825 235 257 134 98 chr11 31535683 31535847 -90308009 - MLT1J1 LTR MaLR -212 232 63 6 825 437 119 0 0 chr11 31535802 31535861 -90307995 - RLTR42 LTR ERVK -176 63 5 6 825 342 316 94 55 chr11 31535925 31536126 -90307730 - MER115 DNA Tip100 -134 559 351 6 825 326 275 266 0 chr11 31536742 31536851 -90307005 + ID_B1 SINE B4 84 221 -3 6 825 258 81 0 0 chr11 31537166 31537203 -90306653 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 825 227 312 91 61 chr11 31537250 31537349 -90306507 + PB1D10 SINE Alu 16 117 0 6 825 1001 123 0 0 chr11 31538582 31538720 -90305136 + B1_Mus1 SINE Alu 5 142 -6 6 825 201 94 0 0 chr11 31538726 31538758 -90305098 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 825 22 56 0 0 chr11 31538888 31538924 -90304932 + AT_rich Low_complexity Low_complexity 1 36 0 6 825 1475 174 39 138 chr11 31538933 31539206 -90304650 + ORR1D1 LTR MaLR 2 228 -146 7 825 288 0 0 0 chr11 31539206 31539238 -90304618 + (CCTG)n Simple_repeat Simple_repeat 3 34 0 7 825 1475 174 39 138 chr11 31539238 31539378 -90304478 + ORR1D1 LTR MaLR 229 373 -1 7 825 1767 113 128 13 chr11 31540149 31540455 -90303401 - ORR1B1 LTR MaLR -13 381 41 7 825 380 317 166 37 chr11 31540649 31540944 -90302912 - MER2 DNA MER2_type -5 340 8 7 825 279 270 194 23 chr11 31541906 31542035 -90301821 - MLT1D LTR MaLR -347 158 8 7 825 240 224 197 0 chr11 31542071 31542147 -90301709 - MLT1F LTR MaLR -72 476 386 7 825 239 253 70 81 chr11 31542194 31542280 -90301576 - MLT1F LTR MaLR -263 316 232 7 825 342 0 0 0 chr11 31542492 31542530 -90301326 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 825 440 261 0 0 chr11 31542673 31542761 -90301095 - RSINE1 SINE B4 -75 90 3 7 825 312 265 122 58 chr11 31542979 31543135 -90300721 + L1M5 LINE L1 5237 5402 -744 7 825 2597 39 0 0 chr11 31543492 31543825 -90300031 + L1Md_F3 LINE L1 6270 6584 0 7 825 487 289 7 36 chr11 31543879 31544019 -90299837 + MIR SINE MIR 67 202 -60 8 825 1698 157 8 145 chr11 31544085 31544465 -90299391 + ORR1A4 LTR MaLR 2 329 0 8 825 3566 14 0 0 chr11 31544465 31544884 -90298972 + L1Md_T LINE L1 5168 5586 -297 8 825 8341 49 0 0 chr11 31544884 31545880 -90297976 + L1Md_T LINE L1 5587 6582 0 8 825 416 74 0 0 chr11 31545880 31545934 -90297922 + ORR1A4 LTR MaLR 276 329 0 8 825 585 0 0 0 chr11 31546596 31546661 -90297195 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 825 4305 177 57 34 chr11 31547320 31548204 -90295652 - RMER13B LTR ERVK 0 908 5 8 825 440 315 92 15 chr11 31549730 31549936 -90293920 + MLT1G LTR MaLR 13 234 -357 8 825 1011 240 135 35 chr11 31549944 31550293 -90293563 - MTD LTR MaLR -4 375 1 8 825 687 25 0 0 chr11 31550315 31550396 -90293460 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 825 701 314 83 4 chr11 31550472 31550733 -90293123 - Tigger7 DNA MER2_type -1890 601 320 8 825 2610 197 47 25 chr11 31550733 31551183 -90292673 + RLTR20B1 LTR ERVK 1 463 -100 9 825 495 0 0 0 chr11 31551183 31551238 -90292618 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 825 2610 197 47 25 chr11 31551238 31551338 -90292518 + RLTR20B1 LTR ERVK 464 563 0 9 825 265 365 104 5 chr11 31551351 31551544 -90292312 - Tigger7 DNA MER2_type -2196 295 84 8 825 240 301 40 27 chr11 31552001 31552076 -90291780 + B3A SINE B2 2 77 -121 9 825 184 342 39 13 chr11 31552151 31552228 -90291628 - L2b LINE L2 -10 3365 3287 9 825 2062 139 49 20 chr11 31552440 31552784 -90291072 + ORR1B1 LTR MaLR 41 394 0 9 825 4171 116 62 32 chr11 31552784 31553496 -90290360 + ORR1B1-int LTR MaLR 1 733 -1230 9 825 698 223 78 150 chr11 31553387 31553509 -90290347 + MT2B LTR ERVL 5 131 -470 9 825 1297 20 0 0 chr11 31553509 31553656 -90290200 + B1_Mus2 SINE Alu 1 147 0 9 825 698 223 78 150 chr11 31553656 31553839 -90290017 + MT2B LTR ERVL 132 288 -313 9 825 2454 131 16 26 chr11 31553797 31554296 -90289560 + ORR1B1-int LTR MaLR 234 1175 -788 9 825 253 236 35 134 chr11 31554312 31554454 -90289402 - LTR73 LTR ERV1 -314 258 131 9 825 479 250 167 69 chr11 31555351 31555596 -90288260 + MLT1C LTR MaLR 147 415 -52 9 825 775 297 41 80 chr11 31555684 31556299 -90287557 + L1M4 LINE L1 4615 5205 -941 9 825 545 263 24 20 chr11 31556303 31556445 -90287411 + ID_B1 SINE B4 81 232 -60 1 825 265 300 41 44 chr11 31557510 31557647 -90286209 + MIRb SINE MIR 16 152 -116 1 825 273 337 133 0 chr11 31557737 31557835 -90286021 + PB1D10 SINE Alu 7 117 0 1 825 381 325 82 76 chr11 31558354 31558624 -90285232 + MLT1A0 LTR MaLR 11 283 -82 1 825 1180 237 67 70 chr11 31558624 31558982 -90284874 - ORR1E LTR MaLR -2 357 1 1 825 381 325 82 76 chr11 31558982 31559027 -90284829 + MLT1A0 LTR MaLR 284 328 -37 1 825 491 147 0 26 chr11 31559219 31559296 -90284560 - B1_Mur2 SINE Alu -56 93 19 1 825 263 222 88 118 chr11 31559227 31559329 -90284527 - MT2B LTR ERVL -361 240 142 1 825 800 195 96 10 chr11 31560254 31560451 -90283405 + B3 SINE B2 2 215 -1 1 825 1248 41 0 0 chr11 31560514 31560661 -90283195 - B1_Mus2 SINE Alu 0 147 1 1 825 216 298 98 0 chr11 31561594 31561737 -90282119 - MIRc SINE MIR -54 154 3 1 825 192 229 20 59 chr11 31561881 31561932 -90281924 - MIRc SINE MIR -121 147 99 1 825 256 358 0 14 chr11 31562432 31562571 -90281285 + (CACCC)n Simple_repeat Simple_repeat 4 140 0 1 825 243 270 25 63 chr11 31563600 31563679 -90280177 + Helitron3Na_Mam RC Helitron 33 108 -378 1 825 312 188 0 0 chr11 31564084 31564148 -90279708 + L1M3 LINE L1 5772 5835 -348 1 825 290 267 53 0 chr11 31564533 31564608 -90279248 + ID4_ SINE ID 2 80 -3 1 825 543 259 27 0 chr11 31564735 31564847 -90279009 + RSINE1 SINE B4 15 129 -36 1 825 198 0 0 0 chr11 31565869 31565891 -90277965 + (A)n Simple_repeat Simple_repeat 1 22 0 1 825 335 276 125 57 chr11 31567610 31567802 -90276054 - L1MC4a LINE L1 -1 7881 7677 1 825 552 234 31 15 chr11 31568025 31568155 -90275701 - B1F SINE Alu -17 132 1 1 825 1209 68 0 0 chr11 31568543 31568690 -90275166 + B1_Mm SINE Alu 1 147 0 1 825 743 179 123 6 chr11 31569596 31569759 -90274097 - B2_Mm2 SINE B2 -12 183 2 1 825 244 244 211 32 chr11 31569909 31570032 -90273824 + MIRc SINE MIR 42 186 -82 1 825 480 122 0 0 chr11 31571035 31571117 -90272739 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1 825 1236 26 0 0 chr11 31571168 31571320 -90272536 + (TAGA)n Simple_repeat Simple_repeat 2 153 0 1 825 26 0 0 0 chr11 31571708 31571734 -90272122 + GC_rich Low_complexity Low_complexity 1 26 0 1 825 200 191 0 0 chr11 31571788 31571830 -90272026 + (CGG)n Simple_repeat Simple_repeat 1 42 0 1 825 415 252 57 36 chr11 31572297 31572437 -90271419 - RSINE1 SINE B4 -19 146 4 1 825 190 280 95 21 chr11 31572650 31572745 -90271111 - MIR SINE MIR -69 193 92 1 825 994 137 0 20 chr11 31573327 31573476 -90270380 - B1_Mur3 SINE Alu -1 148 3 1 825 1154 69 14 0 chr11 31574514 31574658 -90269198 - B1_Mus2 SINE Alu 0 147 2 1 825 2367 122 14 6 chr11 31574915 31575277 -90268579 - ORR1B2 LTR MaLR -2 365 1 1 825 21 0 0 0 chr11 31575528 31575549 -90268307 + AT_rich Low_complexity Low_complexity 1 21 0 1 825 241 208 21 0 chr11 31575768 31575816 -90268040 + ID4_ SINE ID 30 78 -5 1 825 285 270 41 50 chr11 31576890 31577011 -90266845 - MLT1J LTR MaLR -382 130 11 1 825 236 158 68 34 chr11 31577981 31578040 -90265816 + RMER21A LTR ERV1 247 307 -640 1 825 321 295 37 122 chr11 31578085 31578274 -90265582 + MLT1I LTR MaLR 234 406 -5 1 825 347 299 7 74 chr11 31578275 31578423 -90265433 + MLT1N2 LTR MaLR 10 147 -415 1 825 723 300 146 24 chr11 31578965 31579300 -90264556 - Tigger7 DNA MER2_type -2082 409 34 1 825 321 89 0 0 chr11 31579717 31579762 -90264094 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 825 812 128 8 46 chr11 31580724 31580855 -90263001 + B1_Mur2 SINE Alu 19 144 -5 1 825 243 0 0 0 chr11 31580955 31580982 -90262874 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 825 780 171 24 0 chr11 31580999 31581145 -90262711 - B2_Mm2 SINE B2 -36 162 1 1 825 207 0 0 0 chr11 31581210 31581233 -90262623 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 825 2677 74 0 0 chr11 31581578 31581903 -90261953 - ORR1A2 LTR MaLR 0 327 3 1 825 922 241 15 5 chr11 31582165 31582361 -90261495 + MTD LTR MaLR 18 215 -204 1 825 1919 194 36 48 chr11 31582361 31582777 -90261079 + MTD LTR MaLR 1 411 -8 1 825 695 219 111 97 chr11 31582780 31582987 -90260869 + MTD LTR MaLR 210 419 0 1 825 226 187 96 96 chr11 31582987 31583070 -90260786 - MLT1A0 LTR MaLR -282 83 1 1 825 3078 23 0 3 chr11 31583795 31584142 -90259714 + ORR1A0 LTR MaLR 1 346 0 1 825 209 312 0 0 chr11 31584520 31584584 -90259272 + CT-rich Low_complexity Low_complexity 3 66 0 1 825 270 229 0 37 chr11 31584620 31584729 -90259127 + CT-rich Low_complexity Low_complexity 1 105 0 1 825 250 269 62 31 chr11 31585905 31586001 -90257855 - MIRb SINE MIR -54 214 116 1 825 334 279 35 11 chr11 31586379 31586466 -90257390 + MIRb SINE MIR 37 125 -143 1 825 454 319 99 16 chr11 31586956 31587138 -90256718 + Charlie1a DNA MER1_type 93 289 -1166 1 825 229 167 0 87 chr11 31587147 31587193 -90256663 + ID4_ SINE ID 38 79 -4 1 825 723 337 75 40 chr11 31587599 31588023 -90255833 + Charlie1a DNA MER1_type 906 1344 -111 1 825 682 182 29 36 chr11 31588056 31588193 -90255663 - B1F1 SINE Alu -2 147 12 1 826 286 325 109 32 chr11 31589432 31589588 -90254268 - LTR16A LTR ERVL -88 363 196 1 826 220 261 16 69 chr11 31589963 31590063 -90253793 + MIRc SINE MIR 84 179 -29 1 826 197 83 0 27 chr11 31590151 31590188 -90253668 + (CCCCCA)n Simple_repeat Simple_repeat 5 40 0 1 826 231 304 129 52 chr11 31590460 31590692 -90253164 + MER113 DNA MER1_type 227 476 -45 1 826 2155 143 57 57 chr11 31592598 31593034 -90250822 + RMER10A LTR ERVL 1 436 -6 1 826 455 306 113 26 chr11 31593041 31593306 -90250550 - L1MC4 LINE L1 -4986 1229 942 1 826 354 23 0 0 chr11 31593308 31593351 -90250505 + (CTTG)n Simple_repeat Simple_repeat 2 44 0 1 826 426 270 10 80 chr11 31593669 31593870 -90249986 - MER53 DNA hAT 0 193 7 1 826 717 231 14 0 chr11 31594183 31594330 -90249526 + B3 SINE B2 1 149 -67 1 826 242 232 68 68 chr11 31594536 31594624 -90249232 - MIRc SINE MIR -93 175 88 1 826 399 21 0 0 chr11 31594634 31594682 -90249174 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 826 186 43 0 0 chr11 31594687 31594710 -90249146 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 826 1512 193 78 46 chr11 31595629 31595780 -90248076 + ORR1B1 LTR MaLR 36 196 -198 1 826 928 17 17 0 chr11 31595780 31595898 -90247958 + (TC)n Simple_repeat Simple_repeat 2 121 0 1 826 1512 193 78 46 chr11 31595898 31596094 -90247762 + ORR1B1 LTR MaLR 197 394 0 1 826 242 295 28 9 chr11 31596448 31596554 -90247302 - L1MB8 LINE L1 -7 6171 6064 1 826 1333 293 156 39 chr11 31597157 31597804 -90246052 - MER21B LTR ERV1 -140 723 1 1 826 931 58 17 0 chr11 31597931 31598051 -90245805 - B1_Mus1 SINE Alu -14 134 13 1 826 452 123 0 24 chr11 31599221 31599304 -90244552 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 1 826 878 305 69 26 chr11 31599383 31599686 -90244170 + MTEa LTR MaLR 1 316 -63 1 826 2589 134 5 5 chr11 31600137 31600520 -90243336 + MTC LTR MaLR 1 383 -38 1 826 742 240 124 0 chr11 31601213 31601430 -90242426 - Lx9 LINE L1 -106 7538 7295 1 826 314 0 49 0 chr11 31601560 31601601 -90242255 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1 826 1135 82 7 0 chr11 31601601 31601738 -90242118 - B1_Mus1 SINE Alu -9 139 2 1 826 457 305 45 40 chr11 31601773 31601995 -90241861 - ORR1E LTR MaLR 0 359 137 1 826 1224 234 104 29 chr11 31601995 31602303 -90241553 - ORR1E-int LTR MaLR -1239 341 11 1 826 508 246 0 38 chr11 31602317 31602448 -90241408 - ORR1E LTR MaLR -2 377 252 1 826 678 327 17 34 chr11 31602828 31603062 -90240794 - ORR1E LTR MaLR -121 238 9 1 826 1168 72 0 0 chr11 31603886 31604024 -90239832 + B1_Mus2 SINE Alu 1 138 -9 1 826 275 143 0 0 chr11 31604145 31604187 -90239669 - MIRc SINE MIR -116 152 111 1 826 370 363 89 53 chr11 31604212 31604459 -90239397 + LTR33C LTR ERVL 8 263 -366 1 826 716 303 154 8 chr11 31604943 31605209 -90238647 + MER2 DNA MER2_type 2 306 -39 1 826 261 335 112 79 chr11 31605936 31606241 -90237615 + ORR1D1 LTR MaLR 31 345 -29 1 826 474 18 0 0 chr11 31606272 31606327 -90237529 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 826 201 39 0 0 chr11 31606327 31606352 -90237504 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 826 357 183 0 0 chr11 31606358 31606418 -90237438 + L1MA5A LINE L1 6228 6287 -10 1 826 3175 68 13 0 chr11 31606897 31607292 -90236564 + MTB LTR MaLR 1 400 0 1 826 1058 127 98 0 chr11 31608117 31608290 -90235566 + B2_Mm2 SINE B2 1 190 -5 1 826 1118 110 0 0 chr11 31608294 31608440 -90235416 + B1_Mus1 SINE Alu 2 147 -1 1 826 293 228 13 0 chr11 31608440 31608519 -90235337 + GA-rich Low_complexity Low_complexity 1 80 0 1 826 1119 129 0 0 chr11 31608519 31608697 -90235159 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 826 549 0 0 0 chr11 31609313 31609374 -90234482 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 826 252 0 0 0 chr11 31609374 31609401 -90234455 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 826 563 228 3 0 chr11 31609548 31610195 -90233661 + (TG)n Simple_repeat Simple_repeat 1 649 0 1 826 1097 191 300 18 chr11 31610500 31610783 -90233073 + ORR1D1 LTR MaLR 12 374 0 1 826 537 220 43 136 chr11 31610928 31611112 -90232744 + B4 SINE B4 58 224 -68 1 826 1057 91 0 7 chr11 31610970 31611114 -90232742 + B1_Mus1 SINE Alu 6 148 0 1 826 1415 12 0 12 chr11 31611114 31611192 -90232664 + (GAA)n Simple_repeat Simple_repeat 1 78 0 1 826 1569 11 0 0 chr11 31611192 31611371 -90232485 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 826 1415 12 0 12 chr11 31611371 31611462 -90232394 + (GAA)n Simple_repeat Simple_repeat 1 90 0 1 826 195 204 0 0 chr11 31613504 31613553 -90230303 + T-rich Low_complexity Low_complexity 1 49 0 2 826 566 231 243 0 chr11 31615385 31615554 -90228302 + B3 SINE B2 1 210 -6 2 826 459 0 0 0 chr11 31615969 31616020 -90227836 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 826 245 328 98 15 chr11 31619898 31620031 -90223825 - Charlie8 DNA MER1_type -2163 265 122 2 826 916 142 0 26 chr11 31620144 31620296 -90223560 - B1_Mus1 SINE Alu 0 148 1 2 826 227 241 34 17 chr11 31620387 31620446 -90223410 - RSINE1 SINE B4 -104 61 2 2 826 275 318 158 67 chr11 31620450 31620468 -90223388 - B4 SINE B4 -63 229 214 2 826 486 0 0 0 chr11 31620468 31620522 -90223334 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 2 826 275 318 158 67 chr11 31620522 31620712 -90223144 - B4 SINE B4 -79 213 2 2 826 609 247 35 17 chr11 31623468 31623743 -90220113 - MTE2a LTR MaLR -7 372 55 2 826 270 228 0 34 chr11 31623836 31623895 -90219961 - MTE2a LTR MaLR -314 65 9 2 826 1180 48 0 0 chr11 31624123 31624269 -90219587 + B1_Mus1 SINE Alu 1 146 -2 2 826 246 313 16 50 chr11 31624409 31624530 -90219326 - MLT1B LTR MaLR -19 389 273 2 826 225 287 148 0 chr11 31624647 31624762 -90219094 - ORR1E LTR MaLR -224 135 4 2 826 432 228 128 45 chr11 31625021 31625177 -90218679 - MLT1B LTR MaLR -220 170 2 2 826 682 261 40 35 chr11 31625276 31625475 -90218381 + B4A SINE B4 1 200 -92 2 826 190 271 49 33 chr11 31625633 31625694 -90218162 - L2 LINE L2 -856 2563 2502 2 826 263 143 0 0 chr11 31627591 31627633 -90216223 + MER5A1 DNA MER1_type 53 94 -72 2 826 306 230 0 57 chr11 31627919 31628309 -90215547 + CT-rich Low_complexity Low_complexity 1 367 0 2 826 432 228 0 53 chr11 31628357 31628547 -90215309 + CT-rich Low_complexity Low_complexity 1 180 0 2 826 342 156 0 0 chr11 31629583 31629647 -90214209 + (TGG)n Simple_repeat Simple_repeat 2 65 0 2 826 312 230 39 131 chr11 31629665 31629744 -90214112 + MLT1A1 LTR MaLR 291 362 -46 2 826 180 0 0 0 chr11 31629744 31629764 -90214092 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 826 312 230 39 131 chr11 31629764 31629814 -90214042 + MLT1A1 LTR MaLR 363 408 0 2 826 183 351 27 0 chr11 31630080 31630154 -90213702 - MIR SINE MIR -59 149 74 2 826 277 279 86 9 chr11 31630759 31630864 -90212992 - MER5B DNA MER1_type -60 118 6 2 826 230 154 21 67 chr11 31631389 31631454 -90212402 - MIR SINE MIR -100 176 106 2 826 418 267 8 33 chr11 31632005 31632125 -90211731 + MLT1A1 LTR MaLR 292 408 0 2 826 405 296 62 7 chr11 31634932 31635078 -90208778 - MER5A DNA MER1_type -35 154 1 2 826 1247 241 57 13 chr11 31635915 31636286 -90207570 - MTD LTR MaLR -3 376 1 2 826 483 87 0 0 chr11 31636403 31636472 -90207384 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 826 251 227 30 0 chr11 31637233 31637299 -90206557 - MTE2a LTR MaLR -25 354 287 2 826 538 272 95 0 chr11 31637312 31637459 -90206397 - MTE2a LTR MaLR -198 181 21 2 826 372 352 8 0 chr11 31637518 31637643 -90206213 - Tigger5 DNA MER2_type -2238 168 43 2 826 281 315 39 0 chr11 31637732 31637859 -90205997 - L1MC2 LINE L1 -164 6180 6049 2 826 1168 305 26 26 chr11 31640529 31640997 -90202859 + RMER5 LTR ERV1 49 516 -18 2 826 215 304 167 36 chr11 31641613 31641835 -90202021 + L2c LINE L2 3090 3340 -47 2 826 255 301 43 11 chr11 31641862 31641956 -90201900 + L2a LINE L2 3301 3397 -29 2 826 326 310 51 0 chr11 31642018 31642153 -90201703 + MIR SINE MIR 67 218 -50 2 826 241 304 0 0 chr11 31642792 31642848 -90201008 + ID4_ SINE ID 28 83 0 2 826 516 192 29 11 chr11 31643541 31643715 -90200141 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 2 826 301 320 172 0 chr11 31646067 31646195 -90197661 - Tigger5 DNA MER2_type -2196 210 61 2 826 206 0 0 65 chr11 31646339 31646370 -90197486 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 826 254 244 39 94 chr11 31646484 31646611 -90197245 - L1MC LINE L1 -2064 5818 5699 2 826 199 151 40 40 chr11 31648267 31648343 -90195513 + GA-rich Low_complexity Low_complexity 1 76 0 2 826 187 304 126 36 chr11 31648693 31648860 -90194996 + L3 LINE CR1 765 946 -3543 2 826 457 347 58 50 chr11 31649446 31649704 -90194152 - MER21B LTR ERV1 -570 293 34 2 826 181 219 0 47 chr11 31650285 31650328 -90193528 + MIRb SINE MIR 125 165 -103 2 826 344 301 138 88 chr11 31651135 31651169 -90192687 - MLT2D LTR ERVL -66 348 314 2 826 2394 83 6 0 chr11 31651169 31651494 -90192362 - ORR1A2 LTR MaLR 0 327 1 2 826 344 301 138 88 chr11 31651494 31651602 -90192254 - MLT2D LTR ERVL -101 313 184 2 826 315 0 0 0 chr11 31651602 31651637 -90192219 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 826 616 235 0 14 chr11 31651641 31651779 -90192077 - B1_Mur2 SINE Alu -13 136 1 2 826 344 301 138 88 chr11 31651779 31651870 -90191986 - MLT2D LTR ERVL -231 183 97 2 826 696 164 20 0 chr11 31652439 31652836 -90191020 + (CA)n Simple_repeat Simple_repeat 1 405 0 2 826 466 179 29 0 chr11 31652873 31653046 -90190810 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 826 336 96 0 0 chr11 31653053 31653105 -90190751 + HAL1-3A_ME LINE L1 1977 2028 -830 2 826 272 321 65 29 chr11 31653161 31653299 -90190557 + MER20 DNA MER1_type 56 198 -21 2 826 260 242 157 29 chr11 31654168 31654270 -90189586 - MLT1B LTR MaLR 0 408 294 2 826 594 51 0 0 chr11 31654327 31654405 -90189451 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 826 312 301 26 0 chr11 31654434 31654547 -90189309 - MLT1B LTR MaLR -257 133 18 2 826 354 310 79 48 chr11 31654998 31655225 -90188631 - ORR1E LTR MaLR -106 253 20 2 826 256 271 111 9 chr11 31656473 31656581 -90187275 + MIRb SINE MIR 16 134 -134 2 826 332 360 24 30 chr11 31656719 31656885 -90186971 + L2c LINE L2 3052 3216 -171 2 826 1396 161 165 30 chr11 31658125 31658458 -90185398 + ORR1B1 LTR MaLR 14 391 -3 2 826 457 354 10 20 chr11 31658528 31658730 -90185126 - Tigger5 DNA MER2_type -2206 200 1 2 826 256 271 14 0 chr11 31659409 31659479 -90184377 + L1MD2 LINE L1 6037 6107 -252 2 826 185 309 104 21 chr11 31659495 31659591 -90184265 - MER5B DNA MER1_type -74 104 1 2 826 567 300 13 0 chr11 31659864 31660014 -90183842 + MLT1D LTR MaLR 354 505 0 2 826 261 367 25 19 chr11 31660109 31660270 -90183586 + MIRb SINE MIR 88 249 -19 2 826 259 336 33 0 chr11 31660460 31660595 -90183261 + MIRb SINE MIR 55 199 -69 2 826 349 165 120 30 chr11 31661057 31661157 -90182699 + MER53 DNA hAT 6 114 -79 2 826 551 280 120 78 chr11 31661599 31661966 -90181890 - MLT1A LTR MaLR -2 372 6 2 826 275 0 29 0 chr11 31662677 31662712 -90181144 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 2 826 525 236 130 47 chr11 31663178 31663431 -90180425 - B4A SINE B4 -18 274 1 2 826 369 349 0 40 chr11 31664103 31664255 -90179601 + Tigger7 DNA MER2_type 2 147 -2344 2 826 1449 218 131 14 chr11 31664657 31665015 -90178841 + MTD LTR MaLR 5 404 -15 2 826 194 279 16 0 chr11 31665342 31665403 -90178453 - MIRc SINE MIR -170 98 37 2 826 345 109 0 0 chr11 31665503 31665558 -90178298 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 826 198 224 88 50 chr11 31666221 31666301 -90177555 - MIRc SINE MIR -108 160 78 2 826 485 224 9 9 chr11 31666991 31667099 -90176757 - B1F SINE Alu -5 144 37 2 826 323 221 0 14 chr11 31667245 31667314 -90176542 - MIR SINE MIR -113 149 82 2 826 224 227 0 0 chr11 31667461 31667505 -90176351 + CT-rich Low_complexity Low_complexity 2 45 0 2 826 1438 152 5 0 chr11 31667542 31667766 -90176090 + URR1B DNA MER1_type 1 225 0 2 826 180 261 111 42 chr11 31667879 31667951 -90175905 - MIRm SINE MIR -111 165 89 2 826 309 238 0 0 chr11 31668436 31668537 -90175319 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 826 485 303 65 90 chr11 31668550 31668829 -90175027 - B4A SINE B4 -9 283 12 2 826 1016 117 0 0 chr11 31669084 31669221 -90174635 - B1_Mur4 SINE Alu -13 137 1 2 826 303 214 141 14 chr11 31669668 31669739 -90174117 - ID4_ SINE ID 0 83 4 2 826 619 241 14 42 chr11 31669821 31669964 -90173892 - RSINE1 SINE B4 -26 139 1 2 826 387 328 50 123 chr11 31669964 31670126 -90173730 + ORR1E LTR MaLR 8 171 -188 2 826 492 18 0 0 chr11 31670126 31670183 -90173673 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 826 387 328 50 123 chr11 31670183 31670400 -90173456 + ORR1E LTR MaLR 172 359 0 2 826 198 200 116 58 chr11 31670818 31670887 -90172969 + MIRb SINE MIR 121 193 -75 2 826 1552 233 18 15 chr11 31671938 31672250 -90171606 + MTD LTR MaLR 1 313 -106 2 826 895 204 57 43 chr11 31672250 31672460 -90171396 + B3 SINE B2 3 215 -1 2 826 272 203 130 0 chr11 31672470 31672539 -90171317 + MTD LTR MaLR 340 417 -2 2 826 358 148 16 0 chr11 31672607 31672668 -90171188 - ID4_ SINE ID -19 64 3 2 826 378 298 94 120 chr11 31672808 31673041 -90170815 - MLT1J LTR MaLR -45 467 241 2 826 1074 161 51 42 chr11 31673137 31673351 -90170505 - B3 SINE B2 0 216 1 2 826 315 264 118 0 chr11 31673784 31673894 -90169962 + L1MC3 LINE L1 6524 6646 -1139 2 826 302 235 171 29 chr11 31673904 31673966 -90169890 + L1MCa LINE L1 1890 1958 -4550 2 826 306 0 0 0 chr11 31673966 31674000 -90169856 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 826 302 235 171 29 chr11 31674000 31674042 -90169814 + L1MCa LINE L1 1959 2009 -4499 2 826 2279 133 50 95 chr11 31674152 31674649 -90169207 + IAPLTR2_Mm LTR ERVK 1 475 0 2 826 258 127 0 52 chr11 31674675 31674733 -90169123 + IAPEz-int LTR ERVK 3 57 -1930 2 826 455 135 17 133 chr11 31674786 31674906 -90168950 + IAPEz-int LTR ERVK 18 123 -6358 2 826 234 267 0 0 chr11 31674906 31674951 -90168905 + RLTR27 LTR ERVK 231 275 -34 2 826 230 321 0 0 chr11 31674979 31675032 -90168824 + RLTR27 LTR ERVK 223 275 -34 2 826 230 321 0 0 chr11 31675060 31675113 -90168743 + RLTR27 LTR ERVK 223 275 -34 2 826 3512 70 16 18 chr11 31675113 31675609 -90168247 + IAPEz-int LTR ERVK 168 662 -5819 2 826 2119 75 0 0 chr11 31675609 31675887 -90167969 + IAPEz-int LTR ERVK 1359 1636 -4845 2 826 5732 50 4 19 chr11 31675886 31676641 -90167215 + IAPEz-int LTR ERVK 5736 6479 -2 2 826 2269 136 50 95 chr11 31676643 31677140 -90166716 + IAPLTR2_Mm LTR ERVK 1 475 0 2 826 238 342 103 23 chr11 31677469 31677732 -90166124 - L2 LINE L2 -468 2951 2668 2 826 682 311 104 0 chr11 31677930 31678142 -90165714 + B4A SINE B4 57 290 -2 2 826 364 82 33 0 chr11 31678143 31678204 -90165652 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 826 392 112 22 33 chr11 31678237 31678329 -90165527 + GA-rich Low_complexity Low_complexity 3 93 0 2 826 243 0 0 0 chr11 31679632 31679659 -90164197 + (A)n Simple_repeat Simple_repeat 1 27 0 2 826 275 333 6 23 chr11 31679719 31679891 -90163965 + (TA)n Simple_repeat Simple_repeat 1 169 0 2 826 194 91 30 0 chr11 31679894 31679927 -90163929 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 3 826 1228 211 116 5 chr11 31680249 31680608 -90163248 - MTD LTR MaLR 0 421 1 3 826 248 208 0 54 chr11 31680883 31680939 -90162917 - L2a LINE L2 0 3426 3374 3 826 271 302 82 65 chr11 31681028 31681200 -90162656 - MIRb SINE MIR -35 173 2 3 826 401 54 18 0 chr11 31681482 31681538 -90162318 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 826 243 0 0 0 chr11 31682533 31682560 -90161296 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 3 826 4273 158 209 26 chr11 31682721 31682824 -90161032 + RLTR25A LTR ERVK 1 112 -991 3 826 432 0 0 0 chr11 31682824 31682872 -90160984 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 826 4273 158 209 26 chr11 31682872 31683700 -90160156 + RLTR25A LTR ERVK 113 1102 -1 3 826 184 333 0 0 chr11 31684024 31684075 -90159781 + L2b LINE L2 3039 3089 -286 3 826 951 263 65 43 chr11 31684164 31684533 -90159323 + MTEb LTR MaLR 3 379 0 3 826 307 264 182 41 chr11 31686940 31687110 -90156746 - MER20 DNA MER1_type -1 218 25 3 826 1197 56 0 0 chr11 31687194 31687336 -90156520 + B1_Mm SINE Alu 2 143 -4 3 826 356 0 23 0 chr11 31687336 31687380 -90156476 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 3 826 535 207 11 22 chr11 31687661 31687839 -90156017 + CT-rich Low_complexity Low_complexity 2 177 0 3 826 1476 308 72 5 chr11 31687880 31688477 -90155379 - Lx8 LINE L1 -29 7444 6808 3 826 489 264 63 8 chr11 31688585 31688711 -90155145 + ID_B1 SINE B4 85 217 -7 3 826 653 265 130 35 chr11 31689124 31689378 -90154478 - MTEb LTR MaLR 0 379 102 3 826 363 283 97 42 chr11 31689460 31689604 -90154252 - MER2 DNA MER2_type -187 158 7 3 826 315 71 0 0 chr11 31689833 31689875 -90153981 + (TATG)n Simple_repeat Simple_repeat 2 43 0 3 826 449 244 92 0 chr11 31690403 31690522 -90153334 + B1F SINE Alu 1 130 -19 3 826 431 278 88 83 chr11 31690682 31690886 -90152970 + MLT1A0 LTR MaLR 12 216 -149 3 826 643 236 7 46 chr11 31690886 31691037 -90152819 + B1_Mur2 SINE Alu 3 147 -2 3 826 1305 90 10 21 chr11 31691047 31691239 -90152617 + B2_Mm1a SINE B2 2 191 -2 3 826 769 295 63 68 chr11 31691676 31692087 -90151769 + MER113 DNA MER1_type 107 515 -6 3 826 245 246 15 0 chr11 31692379 31692444 -90151412 + (ATGGTG)n Simple_repeat Simple_repeat 6 71 0 3 826 1542 226 69 17 chr11 31692663 31693023 -90150833 + MTE2b LTR MaLR 1 379 0 3 826 311 306 12 0 chr11 31693270 31693355 -90150501 - MIRb SINE MIR -68 200 115 3 826 783 230 183 92 chr11 31693365 31693753 -90150103 + MT2A LTR ERVL 1 542 -59 3 826 745 109 0 26 chr11 31693764 31693877 -90149979 + RMER17A2 LTR ERVK 4 113 -793 3 826 2375 146 36 48 chr11 31693862 31694380 -90149476 - RMER17A2 LTR ERVK -403 555 1 3 826 379 181 162 27 chr11 31695456 31695604 -90148252 + Lx9 LINE L1 7477 7644 0 3 826 603 27 0 0 chr11 31695742 31695815 -90148041 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 826 263 254 40 127 chr11 31696060 31696186 -90147670 - B3A SINE B2 -1 197 83 3 826 303 298 131 0 chr11 31697275 31697359 -90146497 + L2a LINE L2 3291 3385 -41 3 826 350 279 78 55 chr11 31697386 31697551 -90146305 + ID_B1 SINE B4 55 213 -11 3 826 198 0 0 0 chr11 31697551 31697573 -90146283 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 826 282 290 84 53 chr11 31697843 31697974 -90145882 - MLT1A1 LTR MaLR -1 407 273 3 826 1005 224 278 13 chr11 31698550 31698849 -90145007 - MTD LTR MaLR 0 419 42 3 826 1790 208 34 8 chr11 31698866 31699220 -90144636 + ORR1D1 LTR MaLR 3 365 -9 3 826 545 299 26 87 chr11 31699630 31699894 -90143962 + B4A SINE B4 45 292 0 3 826 209 315 0 0 chr11 31699897 31699951 -90143905 + (CACG)n Simple_repeat Simple_repeat 2 55 0 3 826 248 0 31 0 chr11 31700108 31700140 -90143716 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 826 243 242 28 28 chr11 31700171 31700258 -90143598 + PB1D10 SINE Alu 60 146 -3 3 826 699 213 29 23 chr11 31700492 31700665 -90143191 - L1MA6 LINE L1 -33 6267 6094 3 826 270 327 17 31 chr11 31701612 31701728 -90142128 + L2b LINE L2 3062 3174 -201 3 826 216 67 0 0 chr11 31702153 31702183 -90141673 + (C)n Simple_repeat Simple_repeat 1 30 0 3 826 202 362 157 7 chr11 31702792 31702945 -90140911 + MIRb SINE MIR 51 226 -42 3 826 400 247 55 88 chr11 31703357 31703539 -90140317 - MLT1K LTR MaLR -419 176 1 3 826 1179 90 0 0 chr11 31704864 31705030 -90138826 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 3 826 902 78 0 0 chr11 31705032 31705148 -90138708 - B1_Mus1 SINE Alu -6 142 27 3 826 936 187 81 0 chr11 31705177 31705375 -90138481 + B3 SINE B2 1 214 -2 3 826 202 170 42 21 chr11 31706401 31706413 -90137443 + polypurine Low_complexity Low_complexity 4 15 0 3 826 3676 14 60 49 chr11 31706413 31706883 -90136973 - IAPLTR2_Mm LTR ERVK 0 475 1 3 826 202 170 42 21 chr11 31706883 31706918 -90136938 + polypurine Low_complexity Low_complexity 16 51 0 3 826 654 333 68 20 chr11 31707087 31707381 -90136475 - MER2 DNA MER2_type -5 340 33 3 826 199 157 77 19 chr11 31708392 31708444 -90135412 + MIRc SINE MIR 89 143 -125 3 826 184 338 40 0 chr11 31711365 31711439 -90132417 - MIR SINE MIR -11 251 175 3 826 269 351 75 29 chr11 31711480 31711653 -90132203 + Tigger5 DNA MER2_type 11 191 -2215 3 826 775 300 130 7 chr11 31711729 31712021 -90131835 + MTD LTR MaLR 90 417 -2 3 826 191 247 14 0 chr11 31712022 31712095 -90131761 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 826 241 277 50 74 chr11 31712190 31712311 -90131545 + MIR SINE MIR 18 135 -73 3 826 252 327 69 52 chr11 31712689 31712805 -90131051 - L2b LINE L2 0 3375 3258 3 826 973 214 24 14 chr11 31712809 31713022 -90130834 + B3 SINE B2 2 216 0 3 826 934 149 21 0 chr11 31713029 31713170 -90130686 + B1_Mus2 SINE Alu 3 146 -1 3 826 207 0 0 0 chr11 31713178 31713201 -90130655 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 826 3498 30 2 0 chr11 31713344 31713739 -90130117 + MTA_Mm LTR MaLR 1 396 0 3 826 241 313 61 0 chr11 31713739 31713838 -90130018 + L1M5 LINE L1 5680 5784 -456 3 826 431 281 20 67 chr11 31713971 31714120 -90129736 + B1F SINE Alu 8 149 0 3 826 233 312 42 21 chr11 31714128 31714223 -90129633 + L1MB3 LINE L1 5915 6011 -172 3 826 419 160 11 0 chr11 31714365 31714459 -90129397 + GA-rich Low_complexity Low_complexity 2 96 0 3 826 571 347 150 24 chr11 31714787 31715173 -90128683 + L2 LINE L2 2051 2509 -910 3 826 2272 105 12 58 chr11 31715173 31715518 -90128338 - ORR1A4 LTR MaLR 0 329 1 3 826 571 347 150 24 chr11 31715518 31715873 -90127983 + L2 LINE L2 2510 2885 -534 3 826 227 207 112 79 chr11 31716486 31716575 -90127281 - Charlie6 DNA MER1_type -1493 2007 1916 3 826 302 330 9 0 chr11 31717130 31717239 -90126617 + (TGG)n Simple_repeat Simple_repeat 3 112 0 3 826 207 0 0 0 chr11 31717347 31717370 -90126486 + (CTG)n Simple_repeat Simple_repeat 1 23 0 3 826 641 249 29 75 chr11 31717866 31718105 -90125751 + MamRep4096 DNA hAT? 63 290 -136 3 826 2746 97 24 3 chr11 31718424 31718806 -90125050 - ORR1B1 LTR MaLR 0 394 5 3 826 1256 34 0 14 chr11 31718924 31719072 -90124784 + B1_Mm SINE Alu 1 146 -1 3 826 236 53 26 0 chr11 31719072 31719110 -90124746 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 826 342 0 0 0 chr11 31719211 31719249 -90124607 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 826 324 0 0 0 chr11 31719249 31719284 -90124572 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 103 197 330 51 102 chr11 31719308 31719504 -90124352 + MIR SINE MIR 21 206 -56 3 827 303 315 0 18 chr11 31720227 31720337 -90123519 - MLT1A1 LTR MaLR -10 398 291 3 827 239 243 71 0 chr11 31720422 31720492 -90123364 - MLT1A1 LTR MaLR -235 139 65 3 827 367 294 46 31 chr11 31721016 31721146 -90122710 + LTR81C LTR ERV1? 674 805 -348 3 827 267 354 76 70 chr11 31721200 31721556 -90122300 - MLT1A0 LTR MaLR -7 358 1 3 827 284 214 102 46 chr11 31722536 31722644 -90121212 - B1F1 SINE Alu 0 149 36 3 827 382 196 80 13 chr11 31724236 31724350 -90119506 - PB1D9 SINE Alu -1 148 33 3 827 435 92 0 0 chr11 31725906 31725971 -90117885 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 827 948 233 48 0 chr11 31725980 31726186 -90117670 - B3 SINE B2 0 216 1 3 827 2478 261 59 85 chr11 31726202 31727104 -90116752 - RCHARR1 DNA MER1_type -70 904 27 3 827 462 79 0 0 chr11 31727661 31727724 -90116132 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 827 1206 61 0 7 chr11 31729228 31729377 -90114479 - B1_Mus1 SINE Alu 0 148 1 3 827 229 213 48 32 chr11 31729379 31729442 -90114414 + ORR1E LTR MaLR 296 359 0 3 827 221 305 36 24 chr11 31729598 31729682 -90114174 + MIR SINE MIR 164 248 -14 3 827 558 43 0 0 chr11 31731203 31731272 -90112584 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 827 234 319 0 94 chr11 31732454 31732603 -90111253 + L2 LINE L2 2671 2805 -614 3 827 269 296 25 0 chr11 31732604 31732685 -90111171 + MLT1K LTR MaLR 160 242 -353 3 827 251 310 129 10 chr11 31732687 31732788 -90111068 - MIRb SINE MIR -1 267 155 3 827 428 153 12 0 chr11 31733084 31733169 -90110687 + CT-rich Low_complexity Low_complexity 2 87 0 3 827 261 0 0 0 chr11 31733238 31733267 -90110589 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 827 310 217 161 11 chr11 31734721 31734814 -90109042 + PB1D10 SINE Alu 3 109 -8 4 827 375 259 0 23 chr11 31735233 31735320 -90108536 - PB1D10 SINE Alu 0 117 33 4 827 23 0 0 0 chr11 31735762 31735785 -90108071 + AT_rich Low_complexity Low_complexity 1 23 0 4 827 288 0 0 0 chr11 31735854 31735886 -90107970 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 4 827 380 298 51 41 chr11 31736192 31736388 -90107468 - L2a LINE L2 -1 3425 3228 4 827 497 287 51 36 chr11 31736880 31736938 -90106918 + ID_B1 SINE B4 26 193 -31 4 827 820 147 44 7 chr11 31736938 31737047 -90106809 + B1_Mus1 SINE Alu 6 114 -34 4 827 771 98 0 0 chr11 31737047 31737179 -90106677 + (CA)n Simple_repeat Simple_repeat 2 133 0 4 827 497 287 51 36 chr11 31737179 31737206 -90106650 + ID_B1 SINE B4 194 223 -1 4 827 2236 194 96 0 chr11 31737250 31737708 -90106148 - MERVL_2A-int LTR ERVL -4264 1497 996 4 827 458 263 65 25 chr11 31737955 31738140 -90105716 + MLT1C LTR MaLR 261 485 -20 4 827 383 286 53 9 chr11 31740235 31740348 -90103508 + L2a LINE L2 3294 3411 -15 4 827 258 292 106 24 chr11 31740733 31740856 -90103000 - MIRm SINE MIR -128 148 16 4 827 555 16 0 0 chr11 31740964 31741028 -90102828 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 827 260 353 88 6 chr11 31741620 31741791 -90102065 + MIRb SINE MIR 22 206 -62 4 827 503 101 13 0 chr11 31741813 31741892 -90101964 + (TTATG)n Simple_repeat Simple_repeat 4 83 0 4 827 190 398 37 0 chr11 31743084 31743192 -90100664 - L2a LINE L2 -28 3398 3287 4 827 368 332 96 5 chr11 31744243 31744452 -90099404 - MIR SINE MIR -2 260 33 4 827 292 279 13 0 chr11 31744553 31744632 -90099224 + ID4 SINE ID 2 81 -2 4 827 292 275 179 22 chr11 31746409 31746543 -90097313 - RSINE1 SINE B4 -9 156 2 4 827 494 90 0 22 chr11 31746548 31746639 -90097217 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 4 827 422 316 103 4 chr11 31746995 31747227 -90096629 + L1MA5 LINE L1 6043 6297 -3 4 827 277 289 104 45 chr11 31747474 31747608 -90096248 + MIR SINE MIR 109 250 -12 4 827 858 307 96 7 chr11 31747768 31748050 -90095806 + MER2 DNA MER2_type 4 310 -35 4 827 290 197 14 40 chr11 31748839 31748913 -90094943 + LTR33 LTR ERVL 443 514 -1 4 827 327 273 66 29 chr11 31749449 31749585 -90094271 + MIR SINE MIR 70 210 -52 4 827 907 313 120 19 chr11 31750544 31750912 -90092944 - MTD LTR MaLR -14 405 1 4 827 603 335 79 32 chr11 31752242 31752520 -90091336 - LTR78 LTR ERV1 -367 937 647 4 827 238 224 14 29 chr11 31755759 31755828 -90088028 + CT-rich Low_complexity Low_complexity 3 70 0 4 827 447 267 53 33 chr11 31755927 31756082 -90087774 + B3A SINE B2 45 203 -13 4 827 474 18 0 0 chr11 31756101 31756156 -90087700 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 827 23 0 0 0 chr11 31756156 31756179 -90087677 + AT_rich Low_complexity Low_complexity 1 23 0 4 827 754 190 49 7 chr11 31756180 31756323 -90087533 + B1_Mur3 SINE Alu 1 149 0 4 827 1247 115 41 10 chr11 31756959 31757153 -90086703 - 7SK RNA RNA -92 239 40 4 827 259 284 0 102 chr11 31757185 31757199 -90086657 + MT2B LTR ERVL 153 156 -445 4 827 646 263 29 0 chr11 31757199 31757336 -90086520 + B1_Mur2 SINE Alu 2 142 -7 4 827 1009 27 26 39 chr11 31757336 31757569 -90086287 + (TAGA)n Simple_repeat Simple_repeat 1 229 0 4 827 303 341 64 40 chr11 31757953 31758280 -90085576 - L1ME4a LINE L1 -241 5883 5549 4 827 3286 43 2 0 chr11 31758524 31758919 -90084937 - L1Md_T LINE L1 0 6582 6187 4 827 202 288 40 40 chr11 31759544 31759620 -90084236 + L2c LINE L2 3083 3158 -229 4 827 212 371 14 0 chr11 31760457 31760527 -90083329 - L2a LINE L2 -57 3369 3299 4 827 634 278 148 16 chr11 31760673 31760929 -90082927 - MER2 DNA MER2_type -31 314 25 4 827 274 358 117 6 chr11 31761508 31761688 -90082168 - MIRb SINE MIR -44 224 25 4 827 333 100 0 0 chr11 31762036 31762086 -90081770 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 827 705 270 175 43 chr11 31764060 31764459 -90079397 + MER113 DNA MER1_type 37 488 -33 4 827 207 0 0 0 chr11 31764690 31764713 -90079143 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 4 827 254 240 0 0 chr11 31764892 31764942 -90078914 + MER5A DNA MER1_type 6 55 -134 4 827 458 356 137 26 chr11 31765595 31765901 -90077955 + MLT1J LTR MaLR 140 479 -33 4 827 567 175 19 19 chr11 31765987 31766092 -90077764 + B1_Mur3 SINE Alu 45 149 0 4 827 202 349 121 0 chr11 31767400 31767483 -90076373 - MER91C DNA Tip100 -30 110 18 4 827 201 307 178 42 chr11 31768378 31768611 -90075245 - MIRb SINE MIR -2 260 2 4 827 244 333 28 0 chr11 31768681 31768753 -90075103 - L2b LINE L2 -6 3369 3296 4 827 486 0 0 0 chr11 31768754 31768808 -90075048 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 827 330 179 112 53 chr11 31769174 31769277 -90074579 - B1F2 SINE Alu -7 142 3 4 827 1479 129 0 30 chr11 31769661 31769893 -90073963 - URR1B DNA MER1_type 0 225 1 4 827 184 387 0 43 chr11 31770102 31770218 -90073638 - L2b LINE L2 -523 2896 2786 4 827 249 139 0 0 chr11 31770970 31771013 -90072843 + (CGG)n Simple_repeat Simple_repeat 1 43 0 4 827 202 139 0 27 chr11 31771013 31771050 -90072806 + GA-rich Low_complexity Low_complexity 3 38 0 4 827 25 0 0 0 chr11 31771731 31771756 -90072100 + AT_rich Low_complexity Low_complexity 1 25 0 4 827 26 0 0 0 chr11 31771875 31771901 -90071955 + AT_rich Low_complexity Low_complexity 1 26 0 4 827 453 110 0 0 chr11 31773994 31774076 -90069780 + (TATG)n Simple_repeat Simple_repeat 2 83 0 4 827 27 29 0 0 chr11 31774931 31774965 -90068891 + AT_rich Low_complexity Low_complexity 1 34 0 4 827 282 317 0 35 chr11 31775373 31775458 -90068398 + ID4 SINE ID 2 83 0 4 827 628 218 75 0 chr11 31775543 31775676 -90068180 + B1_Mur1 SINE Alu 1 143 -6 4 827 34 24 0 0 chr11 31775931 31775972 -90067884 + AT_rich Low_complexity Low_complexity 1 41 0 4 827 201 39 0 0 chr11 31775972 31775998 -90067858 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 827 219 327 18 0 chr11 31776003 31776058 -90067798 - RSINE1 SINE B4 -29 136 81 4 827 232 190 224 0 chr11 31776311 31776369 -90067487 - MIR SINE MIR -44 218 148 4 827 330 250 86 11 chr11 31776525 31776618 -90067238 + PB1 SINE Alu 24 123 -4 4 827 40 79 0 0 chr11 31776707 31776796 -90067060 + AT_rich Low_complexity Low_complexity 1 89 0 4 827 613 248 109 14 chr11 31776796 31776943 -90066913 - RSINE1 SINE B4 -2 163 3 4 827 845 221 76 15 chr11 31777921 31778119 -90065737 - B3 SINE B2 -4 212 3 4 827 1992 95 3 39 chr11 31778707 31779015 -90064841 + L1Md_F2 LINE L1 6283 6579 -3 4 827 67 25 0 0 chr11 31779164 31779245 -90064611 + AT_rich Low_complexity Low_complexity 1 81 0 4 827 473 280 30 0 chr11 31779413 31779545 -90064311 - B1F SINE Alu -10 139 4 4 827 593 366 0 42 chr11 31780279 31780447 -90063409 + RSINE1 SINE B4 1 161 -4 4 827 246 81 0 0 chr11 31780449 31780486 -90063370 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 827 23 33 0 0 chr11 31780486 31780516 -90063340 + AT_rich Low_complexity Low_complexity 1 30 0 4 827 271 215 15 30 chr11 31780519 31780586 -90063270 + B2_Mm2 SINE B2 5 70 -125 4 827 224 250 97 54 chr11 31780586 31780612 -90063244 + B4 SINE B4 5 101 -191 4 827 212 348 0 0 chr11 31782331 31782400 -90061456 + (CATG)n Simple_repeat Simple_repeat 2 70 0 4 827 402 298 80 8 chr11 31782421 31782546 -90061310 - B4A SINE B4 -77 215 82 4 827 1069 229 77 16 chr11 31782582 31782830 -90061026 - Lx6 LINE L1 -2 7458 7196 4 827 251 286 105 23 chr11 31782833 31782919 -90060937 - B4A SINE B4 -199 93 1 4 827 22 35 0 0 chr11 31783161 31783190 -90060666 + AT_rich Low_complexity Low_complexity 1 29 0 4 827 246 353 24 0 chr11 31784906 31784991 -90058865 - L4 LINE RTE -704 1325 1239 4 827 388 212 11 101 chr11 31785190 31785279 -90058577 + RSINE1 SINE B4 83 163 -2 4 827 356 309 102 30 chr11 31785469 31785636 -90058220 + MIRb SINE MIR 31 209 -59 4 827 266 0 29 0 chr11 31786691 31786725 -90057131 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 827 1124 58 0 0 chr11 31786725 31786863 -90056993 - B1_Mus2 SINE Alu -8 139 2 4 827 315 296 0 7 chr11 31786864 31786954 -90056902 + ID4 SINE ID 9 95 -57 4 827 1053 97 7 0 chr11 31789002 31789147 -90054709 - B1_Mus2 SINE Alu 0 147 2 4 827 24 0 0 0 chr11 31790819 31790843 -90053013 + AT_rich Low_complexity Low_complexity 1 24 0 4 827 271 198 145 24 chr11 31791230 31791313 -90052543 + L1MD2 LINE L1 6203 6295 -64 4 827 2888 127 101 33 chr11 31792029 31792576 -90051280 - RMER4B LTR ERVK -1 584 1 4 827 204 83 0 53 chr11 31793461 31793499 -90050357 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 4 827 1188 63 0 0 chr11 31793502 31793645 -90050211 - B1_Mus1 SINE Alu -4 144 2 4 827 496 29 0 28 chr11 31795548 31795620 -90048236 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 827 394 273 41 33 chr11 31797786 31798017 -90045839 + B4A SINE B4 1 291 -1 4 827 1037 111 220 6 chr11 31798723 31798905 -90044951 - URR1A DNA MER1_type -1 225 5 4 827 266 360 53 0 chr11 31799038 31799152 -90044704 - MIR3 SINE MIR -39 169 50 4 827 897 249 21 66 chr11 31799298 31799539 -90044317 - ORR1D1 LTR MaLR -144 230 1 4 827 251 272 62 0 chr11 31799545 31799626 -90044230 + Charlie23a DNA MER1_type 124 209 -130 4 827 202 295 89 89 chr11 31801795 31801907 -90041949 - L2c LINE L2 -3 3384 3269 5 827 1085 226 104 45 chr11 31801907 31802263 -90041593 + MTE2a LTR MaLR 3 379 0 5 827 202 295 89 89 chr11 31802263 31802340 -90041516 - L2c LINE L2 -119 3268 3195 5 827 201 267 0 0 chr11 31803114 31803159 -90040697 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 5 827 207 0 0 0 chr11 31803958 31803981 -90039875 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 827 2047 62 14 3 chr11 31804159 31804450 -90039406 + MusHAL1 LINE L1 1788 2081 -631 5 827 22 56 0 0 chr11 31804614 31804650 -90039206 + AT_rich Low_complexity Low_complexity 1 36 0 5 827 1235 108 16 0 chr11 31804777 31804963 -90038893 - B2_Mm2 SINE B2 -5 190 2 5 827 43 35 0 0 chr11 31805194 31805251 -90038605 + AT_rich Low_complexity Low_complexity 1 57 0 5 827 803 285 106 56 chr11 31805609 31806126 -90037730 + L1MC1 LINE L1 5662 6204 -129 5 827 477 0 0 0 chr11 31809528 31809581 -90034275 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 827 833 217 16 37 chr11 31809589 31809780 -90034076 - B3A SINE B2 -11 187 1 5 827 261 0 0 0 chr11 31810750 31810779 -90033077 + (T)n Simple_repeat Simple_repeat 1 29 0 5 827 1967 56 0 0 chr11 31810819 31811070 -90032786 - L1Md_A LINE L1 0 6582 6332 5 827 198 0 0 0 chr11 31811172 31811194 -90032662 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 5 827 22 35 0 0 chr11 31811483 31811512 -90032344 + AT_rich Low_complexity Low_complexity 1 29 0 5 827 182 288 136 0 chr11 31811725 31811791 -90032065 + MIRb SINE MIR 167 241 -27 5 827 809 237 135 87 chr11 31814311 31814681 -90029175 - MLT1B LTR MaLR 0 390 3 5 827 479 151 191 14 chr11 31817516 31817536 -90026320 - Tigger7 DNA MER2_type -81 2410 2391 5 827 561 55 0 0 chr11 31817536 31817609 -90026247 + (CATA)n Simple_repeat Simple_repeat 2 74 0 5 827 479 151 191 14 chr11 31817609 31817729 -90026127 - Tigger7 DNA MER2_type -101 2390 2246 5 827 543 238 258 26 chr11 31817730 31817920 -90025936 - Tigger7 DNA MER2_type -2250 241 8 5 827 198 0 0 0 chr11 31821033 31821055 -90022801 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 827 235 288 95 43 chr11 31821088 31821204 -90022652 - L2a LINE L2 -45 3381 3260 5 827 235 360 0 11 chr11 31821569 31821656 -90022200 - Tigger9b DNA MER2_type -33 591 506 5 827 291 349 31 8 chr11 31821973 31822100 -90021756 - Tigger9a DNA Tigger -602 130 1 5 827 416 282 185 79 chr11 31822104 31822532 -90021324 + L1MC4 LINE L1 6503 6975 -1067 5 827 1224 74 0 0 chr11 31822589 31822861 -90020995 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 5 827 292 277 20 0 chr11 31822933 31823034 -90020822 + L1MC4 LINE L1 7079 7181 -861 5 827 373 275 55 9 chr11 31823301 31823411 -90020445 - MLT1A0 LTR MaLR -18 347 233 5 827 352 331 113 21 chr11 31823450 31823592 -90020264 - MLT1A0 LTR MaLR -219 155 1 5 827 1276 150 42 0 chr11 31823605 31823818 -90020038 - URR1A DNA MER1_type 0 226 5 5 827 261 305 142 9 chr11 31824914 31825020 -90018836 + RSINE1 SINE B4 3 122 -43 5 827 621 0 0 0 chr11 31825020 31825089 -90018767 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 827 297 68 0 0 chr11 31825089 31825132 -90018724 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 827 2626 239 128 52 chr11 31825597 31826515 -90017341 - Lx8 LINE L1 -4 7469 6482 5 827 41 66 0 0 chr11 31826624 31826700 -90017156 + AT_rich Low_complexity Low_complexity 1 76 0 5 827 1031 221 42 42 chr11 31826808 31827068 -90016788 + Lx8 LINE L1 6192 6451 -1022 5 827 453 124 1 0 chr11 31827144 31827217 -90016639 + B3A SINE B2 8 81 -112 5 827 256 241 24 48 chr11 31827152 31827235 -90016621 + BC1_Mm scRNA scRNA 16 96 -56 5 827 29 0 0 0 chr11 31827352 31827381 -90016475 + AT_rich Low_complexity Low_complexity 1 29 0 5 827 375 367 34 39 chr11 31827849 31828053 -90015803 + MIRb SINE MIR 24 226 -42 5 827 281 253 101 83 chr11 31828347 31828515 -90015341 - Lx8 LINE L1 -2 7471 7301 5 827 2384 259 132 9 chr11 31828513 31829365 -90014491 - Lx8 LINE L1 -326 7147 6191 5 827 1014 148 48 54 chr11 31829379 31829565 -90014291 - B3 SINE B2 -1 215 31 5 827 271 233 346 8 chr11 31829704 31829834 -90014022 + MIRb SINE MIR 18 191 -77 5 827 211 180 20 20 chr11 31831978 31832029 -90011827 + T-rich Low_complexity Low_complexity 3 53 0 5 827 23 33 0 0 chr11 31832365 31832395 -90011461 + AT_rich Low_complexity Low_complexity 1 30 0 5 827 38 22 0 0 chr11 31833752 31833797 -90010059 + AT_rich Low_complexity Low_complexity 1 45 0 5 827 37 39 0 0 chr11 31835141 31835192 -90008664 + AT_rich Low_complexity Low_complexity 1 51 0 5 827 235 189 14 42 chr11 31837892 31837906 -90005950 + A-rich Low_complexity Low_complexity 2 15 0 5 827 1008 107 7 0 chr11 31837906 31838046 -90005810 + B1_Mur4 SINE Alu 2 142 -8 5 827 235 189 14 42 chr11 31838046 31838103 -90005753 + A-rich Low_complexity Low_complexity 16 71 0 5 827 1694 256 67 35 chr11 31838397 31838904 -90004952 - Lx5 LINE L1 -1 7049 6527 5 827 2375 106 21 28 chr11 31839504 31839893 -90003963 - Lx2 LINE L1 -3 6994 6609 5 827 1341 71 16 0 chr11 31840338 31840522 -90003334 - L1Md_F2 LINE L1 -2 6580 6394 5 827 637 175 7 7 chr11 31841609 31841747 -90002109 + CT-rich Low_complexity Low_complexity 1 138 0 5 827 275 274 84 23 chr11 31842741 31842872 -90000984 - MLT1A1 LTR MaLR -3 405 267 5 827 1613 219 81 14 chr11 31842938 31843295 -90000561 - MTD LTR MaLR -21 398 18 5 827 475 229 0 69 chr11 31843323 31843454 -90000402 - RSINE1 SINE B4 -36 129 8 5 827 234 0 0 0 chr11 31843477 31843503 -90000353 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 827 1157 58 0 0 chr11 31843503 31843640 -90000216 - B1_Mus2 SINE Alu -9 138 2 5 827 2094 47 66 7 chr11 31844126 31844427 -89999429 + ORR1A2 LTR MaLR 1 319 -8 5 827 573 15 0 0 chr11 31846345 31846411 -89997445 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 827 434 268 77 7 chr11 31846463 31846606 -89997250 - RMER15 LTR ERVL -146 429 277 5 827 650 208 70 114 chr11 31846859 31847133 -89996723 - L1M2 LINE L1 -767 5376 5110 5 827 635 217 8 15 chr11 31847133 31847264 -89996592 - B1_Mur3 SINE Alu -18 131 2 5 827 650 208 70 114 chr11 31847264 31847375 -89996481 - L1M2 LINE L1 -1034 5109 5008 5 827 22 35 0 0 chr11 31848832 31848861 -89994995 + AT_rich Low_complexity Low_complexity 1 29 0 5 827 279 0 0 0 chr11 31848987 31849018 -89994838 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 827 22 35 0 0 chr11 31849499 31849528 -89994328 + AT_rich Low_complexity Low_complexity 1 29 0 5 827 226 347 73 48 chr11 31849812 31849936 -89993920 + MIR SINE MIR 20 146 -116 5 827 298 281 291 6 chr11 31849936 31850101 -89993755 + Tigger7 DNA MER2_type 36 247 -2244 5 827 371 261 40 40 chr11 31850132 31850256 -89993600 + Tigger7 DNA MER2_type 312 435 -2056 5 828 846 87 0 0 chr11 31851484 31851622 -89992234 + (GA)n Simple_repeat Simple_repeat 1 138 0 5 828 312 311 126 0 chr11 31851631 31851782 -89992074 + L1_Mur3 LINE L1 1556 1725 -4155 5 828 243 160 19 39 chr11 31851795 31851847 -89992009 + GA-rich Low_complexity Low_complexity 1 51 0 5 828 1485 0 0 0 chr11 31851902 31852067 -89991789 + (GGAGA)n Simple_repeat Simple_repeat 3 167 0 5 828 442 221 114 18 chr11 31852114 31852280 -89991576 + L1_Mur3 LINE L1 4001 4182 -1698 5 828 331 230 112 65 chr11 31852287 31852394 -89991462 + L1M3 LINE L1 4059 4170 -1970 5 828 237 180 0 0 chr11 31852533 31852583 -89991273 + GA-rich Low_complexity Low_complexity 1 50 0 5 828 682 242 97 22 chr11 31853040 31853268 -89990588 + RMER1C Other Other 710 954 -388 5 828 387 0 0 0 chr11 31853298 31853341 -89990515 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 5 828 342 115 0 0 chr11 31853385 31853437 -89990419 + (GGAGA)n Simple_repeat Simple_repeat 5 56 0 5 828 1317 78 0 0 chr11 31853437 31853616 -89990240 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 5 828 1055 277 55 146 chr11 31853637 31854562 -89989294 + L1_Mur3 LINE L1 4141 4981 -899 5 828 1019 295 96 32 chr11 31854581 31855110 -89988746 + L1MA5A LINE L1 5289 5851 -446 5 828 21 36 0 0 chr11 31855454 31855482 -89988374 + AT_rich Low_complexity Low_complexity 1 28 0 5 828 1829 99 159 12 chr11 31855521 31855848 -89988008 + ORR1B1 LTR MaLR 1 375 -19 5 828 414 371 6 6 chr11 31856073 31856241 -89987615 + (CAATC)n Simple_repeat Simple_repeat 5 172 0 5 828 306 420 0 0 chr11 31856183 31856314 -89987542 + (TCCGG)n Simple_repeat Simple_repeat 4 134 0 5 828 25 31 0 0 chr11 31858429 31858461 -89985395 + AT_rich Low_complexity Low_complexity 1 32 0 5 828 252 0 0 0 chr11 31858537 31858565 -89985291 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 828 1474 198 135 0 chr11 31858600 31858934 -89984922 + RLTR30 LTR ERV1 1 379 0 5 828 321 245 9 172 chr11 31859091 31859318 -89984538 - Lx8 LINE L1 -2 7471 7282 5 828 288 195 134 0 chr11 31859631 31859713 -89984143 + RMER15 LTR ERVL 415 507 -68 5 828 608 273 85 5 chr11 31859826 31860025 -89983831 - Lx8 LINE L1 -247 7226 7012 5 828 1196 199 89 87 chr11 31860075 31860390 -89983466 - ORR1D1 LTR MaLR -11 363 2 5 828 235 229 66 0 chr11 31860411 31860472 -89983384 + L1M5 LINE L1 4013 4077 -2069 5 828 382 286 194 0 chr11 31860508 31860704 -89983152 + L1M5 LINE L1 4924 5157 -989 5 828 474 198 0 32 chr11 31860951 31861045 -89982811 + B1_Mur2 SINE Alu 3 93 -56 5 828 26 64 0 0 chr11 31861112 31861159 -89982697 + AT_rich Low_complexity Low_complexity 1 47 0 5 828 423 284 102 24 chr11 31861159 31861365 -89982491 + MLT2D LTR ERVL 69 290 -124 5 828 378 0 0 0 chr11 31861413 31861455 -89982401 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 828 313 331 46 24 chr11 31861522 31861718 -89982138 + L1M5 LINE L1 5512 5702 -538 5 828 463 338 75 18 chr11 31862236 31862516 -89981340 - RMER15 LTR ERVL -5 570 275 5 828 1881 156 79 19 chr11 31863175 31863554 -89980302 + MTB_Mm LTR MaLR 6 407 0 5 828 488 74 15 0 chr11 31863613 31863689 -89980167 + B1_Mus2 SINE Alu 38 124 -25 5 828 828 53 0 9 chr11 31863710 31863824 -89980032 + B2_Mm2 SINE B2 6 118 -77 5 828 1755 161 67 125 chr11 31863837 31864107 -89979749 + RMER19B LTR ERVK 15 232 -670 5 828 477 0 0 0 chr11 31864107 31864160 -89979696 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 828 1755 161 67 125 chr11 31864160 31864321 -89979535 + RMER19B LTR ERVK 233 421 -481 5 828 1705 139 58 31 chr11 31864320 31864647 -89979209 + RMER19B LTR ERVK 551 886 -16 5 828 1093 52 0 15 chr11 31864648 31864785 -89979071 + B1_Mus2 SINE Alu 1 135 -12 5 828 531 0 0 0 chr11 31864786 31864845 -89979011 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5 828 189 0 0 0 chr11 31865557 31865578 -89978278 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 6 828 871 215 104 5 chr11 31866420 31866612 -89977244 + B3 SINE B2 1 211 -5 6 828 710 143 17 0 chr11 31866708 31866827 -89977029 + B1_Mur3 SINE Alu 9 129 -20 6 828 451 244 85 99 chr11 31866842 31867124 -89976732 - L1MB8 LINE L1 -1 6177 5900 6 828 874 195 0 26 chr11 31867280 31867433 -89976423 - B1_Mur1 SINE Alu 0 149 1 6 828 1048 309 89 28 chr11 31867442 31868240 -89975616 - L1MC4 LINE L1 -1930 4284 3438 6 828 668 279 175 25 chr11 31868706 31869100 -89974756 - L1MA4A LINE L1 -375 5928 5476 6 828 549 99 0 0 chr11 31869101 31869182 -89974674 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 828 328 106 47 12 chr11 31869175 31869261 -89974595 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 6 828 251 292 196 7 chr11 31869268 31869406 -89974450 - RSINE1 SINE B4 0 165 2 6 828 1103 285 123 48 chr11 31869408 31870262 -89973594 - L1MA4A LINE L1 -671 5485 4568 6 828 257 242 63 42 chr11 31870688 31870783 -89973073 - L1MC4 LINE L1 -5765 450 354 6 828 1174 56 0 0 chr11 31871383 31871526 -89972330 + B1_Mus2 SINE Alu 1 143 -4 6 828 582 15 0 0 chr11 31871527 31871594 -89972262 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 828 217 378 75 40 chr11 31871621 31871847 -89972009 + MIRb SINE MIR 26 259 -9 6 828 317 230 68 42 chr11 31872930 31873048 -89970808 - MER113 DNA MER1_type -353 168 48 6 828 22 0 0 0 chr11 31874526 31874548 -89969308 + AT_rich Low_complexity Low_complexity 1 22 0 6 828 27 0 0 0 chr11 31874675 31874702 -89969154 + AT_rich Low_complexity Low_complexity 1 27 0 6 828 1131 62 0 0 chr11 31875176 31875322 -89968534 + B1_Mus2 SINE Alu 2 147 0 6 828 315 136 0 0 chr11 31875322 31875381 -89968475 + (TAAA)n Simple_repeat Simple_repeat 4 62 0 6 828 419 259 27 141 chr11 31875828 31876012 -89967844 + RSINE1 SINE B4 3 165 0 6 828 27 81 0 0 chr11 31876662 31876724 -89967132 + AT_rich Low_complexity Low_complexity 1 62 0 6 828 204 40 0 0 chr11 31877039 31877064 -89966792 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 828 24 0 0 0 chr11 31877606 31877630 -89966226 + AT_rich Low_complexity Low_complexity 1 24 0 6 828 483 58 0 14 chr11 31879778 31879848 -89964008 - RLTR9E LTR ERVK -340 69 1 6 828 518 111 19 12 chr11 31879848 31879934 -89963922 - ETnERV2-int LTR ERVK -1 7405 7331 6 828 1633 146 66 60 chr11 31880139 31880503 -89963353 - ETnERV2-int LTR ERVK -984 6422 6057 6 828 4586 131 47 7 chr11 31880495 31881254 -89962602 - ETnERV2-int LTR ERVK -3562 3844 3055 6 828 697 252 0 37 chr11 31881254 31881415 -89962441 - ETnERV2-int LTR ERVK -4798 2608 2454 6 828 662 174 26 0 chr11 31881433 31881548 -89962308 - RLTR19-int LTR ERVK -5082 1055 938 6 828 329 227 52 26 chr11 31881553 31881630 -89962226 - RLTR19-int LTR ERVK -4587 819 741 6 828 262 146 0 0 chr11 31881623 31881671 -89962185 - RLTR19-int LTR ERVK -5218 188 141 6 828 367 152 0 17 chr11 31882113 31882173 -89961683 - ETnERV2-int LTR ERVK -5095 2149 2091 6 828 777 203 40 68 chr11 31882154 31882482 -89961374 - MMETn-int LTR ERVK -2930 384 2 6 828 2392 114 11 73 chr11 31882484 31882920 -89960936 - RLTR9E LTR ERVK 0 409 1 6 828 294 322 148 48 chr11 31883603 31883792 -89960064 + LTR16B2 LTR ERVL 105 312 -150 6 828 234 250 43 64 chr11 31883968 31884062 -89959794 + L1MDa LINE L1 24 115 -6518 6 828 289 137 39 0 chr11 31884068 31884119 -89959737 - ORR1C2 LTR MaLR 0 384 332 6 828 3163 150 80 18 chr11 31884115 31884752 -89959104 - ORR1C2-int LTR MaLR -4 1505 831 6 828 279 93 0 0 chr11 31884752 31884795 -89959061 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 6 828 3163 150 80 18 chr11 31884795 31884835 -89959021 - ORR1C2-int LTR MaLR -679 830 787 6 828 359 191 235 34 chr11 31884827 31884946 -89958910 - B3 SINE B2 -1 215 73 6 828 372 366 45 17 chr11 31885247 31885425 -89958431 + MIR SINE MIR 42 224 -38 6 828 244 176 200 0 chr11 31885461 31885541 -89958315 - B1F1 SINE Alu -14 103 11 6 828 23 0 0 0 chr11 31885912 31885935 -89957921 + AT_rich Low_complexity Low_complexity 1 23 0 6 828 21 82 0 0 chr11 31886089 31886138 -89957718 + AT_rich Low_complexity Low_complexity 1 49 0 6 828 26 50 0 0 chr11 31886597 31886637 -89957219 + AT_rich Low_complexity Low_complexity 1 40 0 6 828 1500 181 104 57 chr11 31886638 31886689 -89957167 - BGLII_B LTR ERVK 0 441 392 6 828 1199 48 0 7 chr11 31886689 31886835 -89957021 + B1_Mus2 SINE Alu 3 147 0 6 828 186 43 0 0 chr11 31886841 31886864 -89956992 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 828 1500 181 104 57 chr11 31886864 31887226 -89956630 - BGLII_B LTR ERVK -50 391 1 6 828 207 0 0 0 chr11 31887254 31887277 -89956579 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 828 569 266 43 7 chr11 31887277 31887417 -89956439 - B3 SINE B2 -70 146 2 6 828 2757 125 129 18 chr11 31887806 31888255 -89955601 + RLTR19 LTR ERVK 1 499 0 6 828 949 57 0 0 chr11 31888427 31888550 -89955306 + B1_Mm SINE Alu 25 147 0 6 828 251 68 0 63 chr11 31888550 31888613 -89955243 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 6 828 989 72 57 14 chr11 31888829 31888970 -89954886 + B1_Mus2 SINE Alu 1 147 0 6 828 1392 56 0 0 chr11 31889845 31890023 -89953833 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 828 1377 61 0 0 chr11 31890044 31890224 -89953632 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 828 261 222 31 31 chr11 31890243 31890308 -89953548 + Lx8 LINE L1 7155 7219 -254 6 828 519 263 58 0 chr11 31890339 31890476 -89953380 + RMER15 LTR ERVL 431 575 0 6 828 370 340 45 19 chr11 31890481 31890637 -89953219 + L2 LINE L2 2306 2465 -954 6 828 326 288 128 24 chr11 31890643 31890807 -89953049 + MLT1A0 LTR MaLR 1 181 -184 6 828 572 40 13 0 chr11 31890810 31890885 -89952971 + (TCC)n Simple_repeat Simple_repeat 2 77 0 6 828 903 132 12 3 chr11 31890896 31891050 -89952806 - B2_Mm2 SINE B2 -54 162 1 6 828 289 242 50 40 chr11 31891481 31891580 -89952276 + MLT1A1 LTR MaLR 11 110 -298 6 828 536 284 15 0 chr11 31892392 31892526 -89951330 + B4A SINE B4 4 139 -153 6 828 1347 249 55 22 chr11 31892526 31892891 -89950965 - RLTR14 LTR ERV1 0 382 6 6 828 475 274 68 11 chr11 31893066 31893243 -89950613 - RLTR14-int LTR ERV1 -165 5152 4966 6 828 358 197 149 90 chr11 31893221 31893355 -89950501 - RLTR14-int LTR ERV1 -4729 588 447 6 828 1105 240 85 72 chr11 31893940 31894317 -89949539 - RLTR14 LTR ERV1 0 382 1 6 828 333 277 35 24 chr11 31894380 31894465 -89949391 + B4A SINE B4 189 274 -18 6 828 429 70 0 0 chr11 31894513 31894570 -89949286 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 828 363 251 24 176 chr11 31895385 31895584 -89948272 - L1M5 LINE L1 -751 5395 5220 6 828 927 226 24 19 chr11 31895609 31895821 -89948035 - B3 SINE B2 0 216 4 6 828 1116 81 17 0 chr11 31895831 31896005 -89947851 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 6 828 252 339 86 35 chr11 31896087 31896460 -89947396 - L1MD LINE L1 -1446 4700 4309 6 828 441 341 73 17 chr11 31896521 31896700 -89947156 - B3A SINE B2 -9 189 1 6 828 308 301 44 39 chr11 31896735 31896939 -89946917 - L1M5 LINE L1 -2319 3827 3623 6 828 367 257 84 50 chr11 31897117 31897236 -89946620 + MER20 DNA MER1_type 43 165 -54 6 828 236 274 82 41 chr11 31897405 31897527 -89946329 - L1MD LINE L1 -3692 2454 2328 6 828 941 275 30 101 chr11 31897549 31897954 -89945902 - MTEa LTR MaLR -3 376 1 6 828 191 95 0 45 chr11 31898050 31898094 -89945762 + (TTG)n Simple_repeat Simple_repeat 1 42 0 6 828 400 135 27 13 chr11 31898094 31898169 -89945687 - B1_Mur4 SINE Alu 0 150 75 6 828 1792 147 0 18 chr11 31898311 31898595 -89945261 - RMER1B Other Other -330 736 458 6 828 252 0 0 0 chr11 31898631 31898659 -89945197 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 828 255 316 26 0 chr11 31899839 31899915 -89943941 + MIRb SINE MIR 32 109 -159 6 828 216 0 0 0 chr11 31900157 31900181 -89943675 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 828 1284 84 0 0 chr11 31900847 31901062 -89942794 + (GAAA)n Simple_repeat Simple_repeat 1 215 0 6 828 198 0 0 0 chr11 31901062 31901084 -89942772 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 6 828 360 0 0 0 chr11 31901200 31901240 -89942616 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 828 198 327 9 65 chr11 31902483 31902591 -89941265 - L2c LINE L2 -242 3145 3044 6 828 278 248 57 76 chr11 31903197 31903302 -89940554 - MER5B DNA MER1_type -19 159 57 6 828 219 267 22 34 chr11 31903972 31904061 -89939795 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 828 189 214 0 0 chr11 31904082 31904124 -89939732 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 828 216 283 118 11 chr11 31904192 31904285 -89939571 - MIR SINE MIR -131 131 29 6 828 340 295 31 21 chr11 31904414 31904511 -89939345 - B1_Mur3 SINE Alu -51 98 1 6 828 192 345 0 0 chr11 31904515 31904570 -89939286 + MIRc SINE MIR 98 152 -116 6 828 725 246 28 0 chr11 31904813 31904955 -89938901 + B3A SINE B2 3 148 -50 6 828 636 26 0 0 chr11 31904955 31905033 -89938823 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 828 1267 251 53 15 chr11 31905112 31905452 -89938404 - Lx8 LINE L1 -3 7470 7118 6 828 295 310 61 17 chr11 31905696 31905811 -89938045 - ORR1E LTR MaLR -218 141 22 6 828 542 264 92 58 chr11 31906192 31906365 -89937491 + MER20 DNA MER1_type 38 216 -3 6 828 1933 154 83 9 chr11 31907006 31907354 -89936502 + ORR1D1 LTR MaLR 1 374 0 6 828 340 323 0 83 chr11 31907804 31907975 -89935881 + MIRb SINE MIR 37 186 -76 6 828 979 192 70 15 chr11 31908873 31909074 -89934782 - B3 SINE B2 -4 212 1 6 828 612 263 127 35 chr11 31909598 31909771 -89934085 - B3A SINE B2 -9 189 1 6 828 252 0 0 0 chr11 31910840 31910868 -89932988 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 6 828 366 181 45 57 chr11 31910932 31911020 -89932836 + PB1D9 SINE Alu 34 120 0 6 828 609 14 0 0 chr11 31911020 31911090 -89932766 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 6 828 563 0 15 0 chr11 31911814 31911881 -89931975 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 828 315 0 0 0 chr11 31911881 31911915 -89931941 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 828 1743 192 102 10 chr11 31912529 31912913 -89930943 - MTD LTR MaLR 0 419 1 6 828 2499 138 2 36 chr11 31914346 31914399 -89929457 - MTB_Mm LTR MaLR -8 399 352 6 828 2545 83 6 0 chr11 31914399 31914724 -89929132 - ORR1A2 LTR MaLR 0 327 1 6 828 2499 138 2 36 chr11 31914724 31915083 -89928773 - MTB_Mm LTR MaLR -56 351 1 6 828 474 310 39 18 chr11 31915425 31915653 -89928203 - MLT1E3 LTR MaLR -154 500 284 6 828 416 331 56 17 chr11 31916307 31916485 -89927371 + MIRb SINE MIR 32 216 -52 6 828 477 312 65 0 chr11 31916534 31916672 -89927184 + RSINE1 SINE B4 2 148 -17 6 828 21 0 0 0 chr11 31916691 31916712 -89927144 + AT_rich Low_complexity Low_complexity 1 21 0 6 828 360 331 99 6 chr11 31916758 31916919 -89926937 + Lx8 LINE L1 7042 7217 -256 6 828 277 306 0 0 chr11 31917196 31917268 -89926588 + ID2 SINE ID 1 72 -11 7 828 531 0 0 0 chr11 31918102 31918161 -89925695 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 828 328 324 116 79 chr11 31918327 31918706 -89925150 - L2 LINE L2 -357 3062 2670 7 828 2720 172 58 15 chr11 31918793 31918891 -89924965 - RLTR20B2 LTR ERVK 0 560 454 7 828 180 0 0 0 chr11 31918891 31918911 -89924945 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 828 2720 172 58 15 chr11 31918911 31919349 -89924507 - RLTR20B2 LTR ERVK -107 453 2 7 828 249 57 0 0 chr11 31919890 31919925 -89923931 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 828 678 13 0 0 chr11 31919925 31920004 -89923852 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 828 1184 125 156 0 chr11 31921012 31921204 -89922652 - URR1A DNA MER1_type -2 224 3 7 828 1127 66 139 0 chr11 31921977 31922143 -89921713 - B2_Mm2 SINE B2 -6 189 1 7 828 2969 65 36 0 chr11 31923600 31923986 -89919870 - MTB LTR MaLR 0 400 1 7 828 642 178 0 0 chr11 31924899 31925062 -89918794 + (CA)n Simple_repeat Simple_repeat 2 164 0 7 828 312 196 0 18 chr11 31925063 31925120 -89918736 + HAL1-3A_ME LINE L1 1976 2031 -827 7 828 310 246 0 0 chr11 31925134 31925203 -89918653 - Lx7 LINE L1 -384 7312 7244 7 828 1235 35 12 12 chr11 31925206 31925377 -89918479 + (TAGA)n Simple_repeat Simple_repeat 2 172 0 7 828 360 348 88 22 chr11 31928005 31928187 -89915669 + MIRb SINE MIR 48 241 -27 7 828 521 349 23 23 chr11 31928600 31928817 -89915039 + MER20 DNA MER1_type 3 219 0 7 828 241 250 162 30 chr11 31928960 31929059 -89914797 + PB1D10 SINE Alu 9 120 0 7 828 186 133 0 0 chr11 31929073 31929103 -89914753 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 7 828 1025 177 104 0 chr11 31929209 31929401 -89914455 + B3 SINE B2 5 216 0 7 828 558 43 0 0 chr11 31929997 31930066 -89913790 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 828 257 323 0 0 chr11 31930085 31930150 -89913706 - B4A SINE B4 -226 66 2 7 828 240 35 0 0 chr11 31930192 31930221 -89913635 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 828 773 233 24 33 chr11 31930435 31930648 -89913208 - MTEa LTR MaLR -3 376 166 7 828 253 268 0 0 chr11 31930651 31930707 -89913149 - MTEa LTR MaLR -323 56 1 7 828 268 306 43 50 chr11 31930707 31930833 -89913023 - MER3 DNA MER1_type -65 144 20 7 828 486 0 0 0 chr11 31930908 31930962 -89912894 + (TATG)n Simple_repeat Simple_repeat 2 55 0 7 828 186 128 40 50 chr11 31931187 31931286 -89912570 + (CA)n Simple_repeat Simple_repeat 2 99 0 7 828 451 270 50 21 chr11 31931459 31931599 -89912257 + MLT1A0 LTR MaLR 141 284 -81 7 828 286 247 82 57 chr11 31931918 31932077 -89911779 - L1MA5 LINE L1 -3 6297 6135 7 828 279 278 44 0 chr11 31932157 31932247 -89911609 - L1M2 LINE L1 -314 5875 5782 7 828 830 272 45 11 chr11 31932285 31932549 -89911307 - L1M2 LINE L1 -498 5793 5521 7 828 191 189 19 0 chr11 31932729 31932782 -89911074 + CT-rich Low_complexity Low_complexity 2 55 0 7 828 850 178 7 20 chr11 31933057 31933206 -89910650 - B1_Mus2 SINE Alu 0 147 1 7 828 246 262 12 24 chr11 31933560 31933642 -89910214 - Lx8 LINE L1 0 7473 7393 7 828 2669 159 76 14 chr11 31933661 31934147 -89909709 + RMER20A LTR ERVK 1 516 0 7 828 899 18 9 0 chr11 31934187 31934296 -89909560 + (TG)n Simple_repeat Simple_repeat 1 110 0 7 828 2375 241 57 2 chr11 31934299 31934823 -89909033 - Lx8 LINE L1 -372 7101 6549 7 828 1043 275 112 75 chr11 31936667 31936802 -89907054 - L1MA6 LINE L1 -11 6289 6141 7 828 447 121 0 35 chr11 31936802 31936888 -89906968 + L1Md_F2 LINE L1 6498 6580 -2 7 828 1043 275 112 75 chr11 31936888 31937377 -89906479 - L1MA6 LINE L1 -160 6140 5642 7 828 509 280 32 21 chr11 31937392 31937582 -89906274 - L1MA6 LINE L1 -715 5585 5394 7 828 995 188 56 0 chr11 31938626 31938823 -89905033 + B3 SINE B2 3 210 -6 7 828 1333 17 14 14 chr11 31939188 31939538 -89904318 + (TG)n Simple_repeat Simple_repeat 1 350 0 7 828 307 285 80 16 chr11 31939984 31940109 -89903747 - MIRc SINE MIR -121 147 15 7 828 188 191 0 67 chr11 31940096 31940141 -89903715 - L3 LINE CR1 -75 4414 4373 7 828 382 206 29 0 chr11 31940566 31940634 -89903222 + B3A SINE B2 7 76 -122 7 828 495 0 0 0 chr11 31940638 31940693 -89903163 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 828 696 281 20 45 chr11 31941729 31941930 -89901926 + B3A SINE B2 3 198 0 7 828 388 167 10 10 chr11 31942929 31943026 -89900830 + (CA)n Simple_repeat Simple_repeat 2 98 0 7 828 364 245 184 74 chr11 31943148 31943311 -89900545 + B3A SINE B2 2 182 -16 7 828 285 51 0 0 chr11 31943348 31943387 -89900469 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 7 828 312 286 20 39 chr11 31943604 31943706 -89900150 - MLT1A1 LTR MaLR -7 401 302 7 828 311 228 40 95 chr11 31943890 31944013 -89899843 - ORR1E LTR MaLR -224 146 31 7 828 2292 127 116 0 chr11 31944877 31945248 -89898608 - MTC LTR MaLR -3 418 5 7 828 291 85 0 0 chr11 31945362 31945409 -89898447 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 7 828 546 274 104 31 chr11 31945446 31945638 -89898218 + MER68 LTR ERVL 8 213 -350 7 828 5004 134 38 55 chr11 31945646 31946562 -89897294 - RMER17A2 LTR ERVK -5 901 1 7 828 248 257 53 13 chr11 31946564 31946639 -89897217 + MER68 LTR ERVL 217 294 -269 7 828 818 215 90 16 chr11 31946671 31946860 -89896996 + B3 SINE B2 14 216 0 7 828 323 333 85 12 chr11 31946875 31947039 -89896817 + MER68 LTR ERVL 343 518 -45 7 828 236 331 23 62 chr11 31949386 31949515 -89894341 + MIRb SINE MIR 120 243 -25 7 828 306 280 12 12 chr11 31949588 31949677 -89894179 - MIR SINE MIR -115 153 65 7 828 257 301 0 14 chr11 31949855 31949929 -89893927 - MLT1D LTR MaLR -2 465 393 7 828 2345 120 82 11 chr11 31949939 31950318 -89893538 - MTC LTR MaLR 0 421 16 7 828 291 325 65 8 chr11 31950452 31950576 -89893280 - MLT1D LTR MaLR -352 153 23 7 828 335 268 46 0 chr11 31950852 31950945 -89892911 + MIR SINE MIR 75 170 -92 7 828 229 351 40 13 chr11 31952093 31952243 -89891613 + L2 LINE L2 2727 2880 -539 7 828 227 344 29 37 chr11 31952689 31952825 -89891031 - MER5B DNA MER1_type -40 138 4 7 828 185 326 91 23 chr11 31952913 31953001 -89890855 + MER5B DNA MER1_type 85 178 0 7 828 1010 281 110 3 chr11 31953681 31954009 -89889847 - L1MB5 LINE L1 -31 6143 5781 7 828 586 293 115 4 chr11 31954011 31954237 -89889619 - MER2 DNA MER2_type -4 341 91 7 828 1611 132 28 114 chr11 31954386 31954746 -89889110 - ORR1A4 LTR MaLR 0 329 1 7 828 450 0 0 0 chr11 31955667 31955717 -89888139 + (TAA)n Simple_repeat Simple_repeat 2 51 0 7 828 269 345 25 55 chr11 31955804 31956049 -89887807 - MIRb SINE MIR -5 263 23 7 828 463 330 43 83 chr11 31956520 31956672 -89887184 - Tigger5 DNA MER2_type -65 2341 2203 7 828 716 139 114 15 chr11 31956672 31956803 -89887053 + B1_Mur3 SINE Alu 5 148 -1 7 828 463 330 43 83 chr11 31956803 31956904 -89886952 - Tigger5 DNA MER2_type -204 2202 2098 7 828 241 267 84 56 chr11 31961218 31961325 -89882531 - MLT1A1 LTR MaLR 0 408 299 7 828 529 245 72 56 chr11 31961344 31961539 -89882317 - MLT1A1 LTR MaLR -210 198 1 7 828 1448 113 264 86 chr11 31962423 31962505 -89881351 + RMER17C LTR ERVK 1 82 -328 7 828 978 136 0 0 chr11 31962505 31962652 -89881204 + B1_Mus1 SINE Alu 2 148 0 7 828 1448 113 264 86 chr11 31962652 31962722 -89881134 + RMER17C LTR ERVK 83 184 -226 7 828 1034 92 0 7 chr11 31962722 31962875 -89880981 + (TTCTC)n Simple_repeat Simple_repeat 5 156 0 7 828 1448 113 264 86 chr11 31962875 31963069 -89880787 + RMER17C LTR ERVK 185 410 0 7 828 762 67 16 24 chr11 31963291 31963414 -89880442 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 7 828 246 62 0 0 chr11 31964184 31964216 -89879640 + (CCCCCA)n Simple_repeat Simple_repeat 5 36 0 7 828 1214 61 0 0 chr11 31965103 31965251 -89878605 - B1_Mus1 SINE Alu 0 148 1 7 828 252 319 0 0 chr11 31965354 31965445 -89878411 - L1MD3 LINE L1 -174 7821 7731 7 828 233 191 0 42 chr11 31965471 31965542 -89878314 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 7 828 377 300 51 62 chr11 31965609 31965829 -89878027 + RMER12 LTR ERVK 770 989 -333 7 828 254 303 0 0 chr11 31965829 31965905 -89877951 - ID4 SINE ID -3 80 5 7 828 377 300 51 62 chr11 31965905 31965940 -89877916 + RMER12 LTR ERVK 990 1021 -301 7 828 540 291 40 11 chr11 31965952 31966129 -89877727 - L1MD3 LINE L1 -1169 6826 6645 7 828 387 132 0 0 chr11 31966130 31966198 -89877658 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 828 459 0 0 0 chr11 31966370 31966421 -89877435 + (CTCA)n Simple_repeat Simple_repeat 3 53 0 7 828 1688 228 142 16 chr11 31966456 31966975 -89876881 - Lx6 LINE L1 -3 7457 6506 7 828 253 325 91 58 chr11 31967840 31967961 -89875895 + MLT1J2 LTR MaLR 190 314 -134 7 828 40 21 0 0 chr11 31968339 31968386 -89875470 + AT_rich Low_complexity Low_complexity 1 47 0 7 828 303 350 95 22 chr11 31969240 31969471 -89874385 + MIRc SINE MIR 11 258 -10 7 828 335 338 75 14 chr11 31969578 31969725 -89874131 + MLT1B LTR MaLR 12 167 -223 7 828 349 223 119 51 chr11 31970036 31970154 -89873702 + B3 SINE B2 91 216 0 7 828 604 208 90 51 chr11 31972043 31972220 -89871636 - B3 SINE B2 -4 212 29 7 828 259 307 0 0 chr11 31972469 31972544 -89871312 - L1MA5 LINE L1 -161 6139 6065 7 828 453 36 0 0 chr11 31972703 31972758 -89871098 + (CAGA)n Simple_repeat Simple_repeat 1 55 0 7 828 1052 314 80 22 chr11 31972962 31973412 -89870444 - RMER5 LTR ERV1 -56 478 3 7 828 387 289 129 102 chr11 31974210 31975030 -89868826 + L1ME2z LINE L1 5535 6376 -68 7 828 343 309 59 47 chr11 31975216 31975386 -89868470 - MIRb SINE MIR -50 218 47 7 828 260 290 95 21 chr11 31975515 31975610 -89868246 - B3 SINE B2 -69 147 46 7 828 396 224 164 23 chr11 31975659 31975787 -89868069 + MLT1C LTR MaLR 7 152 -238 7 828 204 40 0 0 chr11 31975796 31975821 -89868035 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 7 828 434 290 165 15 chr11 31975840 31975973 -89867883 - RSINE1 SINE B4 -11 154 2 7 828 518 189 0 0 chr11 31976047 31976137 -89867719 + B3 SINE B2 2 91 -125 7 828 523 326 57 57 chr11 31976142 31976425 -89867431 + MLT1C LTR MaLR 167 449 -18 7 828 386 255 47 9 chr11 31976680 31976787 -89867069 + B3 SINE B2 2 112 -104 7 828 1164 48 0 27 chr11 31976862 31976998 -89866858 + B1_Mus2 SINE Alu 2 136 -11 7 828 495 0 0 0 chr11 31976998 31977053 -89866803 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 8 828 1164 48 0 27 chr11 31977053 31977065 -89866791 + B1_Mus2 SINE Alu 137 146 -1 7 828 583 206 178 67 chr11 31977172 31977366 -89866490 + B3A SINE B2 1 216 0 8 828 342 0 0 0 chr11 31977630 31977668 -89866188 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 828 1076 98 0 12 chr11 31977936 31978101 -89865755 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 8 828 794 216 189 22 chr11 31978384 31978569 -89865287 - B3 SINE B2 0 216 1 8 828 301 295 62 20 chr11 31979125 31979392 -89864464 + L1M5 LINE L1 5221 5500 -694 8 828 214 270 89 10 chr11 31979429 31979530 -89864326 - L2 LINE L2 -1084 2335 2227 8 828 2306 84 28 15 chr11 31980739 31981064 -89862792 + ORR1A4 LTR MaLR 1 329 0 8 828 191 340 19 87 chr11 31981137 31981240 -89862616 + MIRc SINE MIR 50 145 -123 8 103 454 294 87 88 chr11 31981516 31981829 -89862027 + ORR1D2 LTR MaLR 1 309 -70 8 829 546 43 0 0 chr11 31981829 31981898 -89861958 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 829 226 289 110 34 chr11 31981898 31981960 -89861896 + ORR1D2 LTR MaLR 310 379 0 8 829 1756 170 71 35 chr11 31982223 31982619 -89861237 - RMER17C LTR ERVK 0 410 1 8 829 2122 173 132 101 chr11 31982678 31983255 -89860601 - RMER19B LTR ERVK 0 902 308 8 829 289 364 38 23 chr11 31983680 31983812 -89860044 + MLT1J1 LTR MaLR 3 136 -308 8 829 751 276 35 69 chr11 31983971 31984232 -89859624 + LTR40a LTR ERVL 1 252 -267 8 829 1306 238 128 16 chr11 31984265 31984632 -89859224 - MTD LTR MaLR -11 408 1 8 829 921 223 48 142 chr11 31985389 31985612 -89858244 + RCHARR1 DNA MER1_type 666 881 -93 8 829 708 248 28 37 chr11 31985612 31985826 -89858030 - B3 SINE B2 0 216 5 8 829 921 223 48 142 chr11 31985826 31985932 -89857924 + RCHARR1 DNA MER1_type 882 964 -10 8 829 222 281 67 4 chr11 31987172 31987294 -89856562 + MIRb SINE MIR 36 165 -111 8 829 292 318 127 0 chr11 31988474 31988584 -89855272 - MIR SINE MIR -118 144 21 8 829 785 178 8 0 chr11 31988609 31988738 -89855118 + B1_Mur1 SINE Alu 1 130 -19 8 829 4024 268 168 35 chr11 31988764 31990020 -89853836 - Charlie12 DNA MER1_type -293 2580 1147 8 829 5129 109 82 27 chr11 31990020 31990588 -89853268 - RMER17A2 LTR ERVK 0 906 301 8 829 1133 65 0 6 chr11 31990588 31990744 -89853112 + (GGAGA)n Simple_repeat Simple_repeat 2 156 0 8 829 5129 109 82 27 chr11 31990744 31991034 -89852822 - RMER17A2 LTR ERVK -606 300 2 8 829 4024 268 168 35 chr11 31991034 31991502 -89852354 - Charlie12 DNA MER1_type -1727 1146 626 8 829 292 312 20 30 chr11 31991689 31991788 -89852068 - Charlie12 DNA MER1_type -2380 493 396 8 829 621 292 28 22 chr11 31991798 31991980 -89851876 + RMER30 DNA MER1_type 16 198 -4 8 829 4518 104 26 47 chr11 31992458 31993242 -89850614 - RMER17A LTR ERVK 0 751 1 8 829 1039 218 236 10 chr11 31993700 31993842 -89850014 - ORR1D2 LTR MaLR -6 364 182 8 829 540 0 0 0 chr11 31993842 31993902 -89849954 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 829 1039 218 236 10 chr11 31993902 31994056 -89849800 - ORR1D2 LTR MaLR -189 181 3 8 829 271 304 21 32 chr11 31994395 31994490 -89849366 - MIRc SINE MIR -122 146 53 8 829 260 274 170 43 chr11 31994643 31994784 -89849072 + RMER15 LTR ERVL 2 160 -415 8 829 702 122 0 0 chr11 31995009 31995148 -89848708 + (TG)n Simple_repeat Simple_repeat 2 140 0 8 829 1213 247 111 66 chr11 31995188 31995673 -89848183 - RLTR11A LTR ERVK -9 519 13 8 829 685 185 8 0 chr11 31996376 31996495 -89847361 + RMER30 DNA MER1_type 5 124 -78 8 829 240 190 85 17 chr11 31996853 31996912 -89846944 + Charlie17a DNA MER1_type 13 75 -144 8 829 274 254 55 21 chr11 31997272 31997417 -89846439 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 8 829 1647 243 102 5 chr11 31997982 31998363 -89845493 - MTD LTR MaLR -1 418 1 8 829 270 228 25 25 chr11 31998367 31998448 -89845408 + (TCCA)n Simple_repeat Simple_repeat 3 83 0 8 829 226 288 0 9 chr11 31998460 31998534 -89845322 - MIRc SINE MIR -110 158 84 8 829 857 300 107 36 chr11 31998952 31999364 -89844492 - L1ME1 LINE L1 -288 5886 5471 8 829 2304 78 62 3 chr11 31999364 31999673 -89844183 - ORR1A2 LTR MaLR 0 327 1 8 829 857 298 109 33 chr11 31999673 31999773 -89844083 - L1ME1 LINE L1 -709 5470 5353 8 829 766 227 34 23 chr11 31999816 31999992 -89843864 - B4 SINE B4 -4 288 111 8 829 326 319 77 18 chr11 32000440 32000660 -89843196 - L1MEa LINE L1 -5581 489 257 1 829 640 250 90 5 chr11 32001715 32001916 -89841940 + MTEa LTR MaLR 138 355 -24 2 829 888 191 110 19 chr11 32001886 32002131 -89841725 + MTD LTR MaLR 128 411 -8 3 829 294 95 0 0 chr11 32003575 32003617 -89840239 + (T)n Simple_repeat Simple_repeat 1 42 0 4 829 831 174 28 0 chr11 32003617 32003761 -89840095 - B1_Mus1 SINE Alu 0 148 1 5 829 267 243 84 14 chr11 32004372 32004443 -89839413 - PB1D10 SINE Alu 0 117 42 6 829 721 243 47 43 chr11 32004484 32004507 -89839349 - B3 SINE B2 -4 212 191 7 829 2477 96 52 6 chr11 32004507 32004872 -89838984 + RLTR9A2 LTR ERVK 1 382 -1 8 829 781 198 48 80 chr11 32004872 32005059 -89838797 - B3A SINE B2 -17 181 1 7 829 1147 135 107 24 chr11 32005105 32005310 -89838546 - URR1A DNA MER1_type 0 226 5 9 829 212 68 0 83 chr11 32005975 32006023 -89837833 + T-rich Low_complexity Low_complexity 1 44 0 1 829 235 129 16 31 chr11 32007230 32007294 -89836562 + A-rich Low_complexity Low_complexity 2 64 0 1 829 210 191 0 0 chr11 32007458 32007500 -89836356 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 1 829 412 318 38 38 chr11 32007550 32007759 -89836097 - L1MA4 LINE L1 -395 5905 5697 1 829 983 75 104 0 chr11 32008240 32008374 -89835482 + B1_Mus1 SINE Alu 1 148 0 1 829 207 0 0 0 chr11 32008377 32008400 -89835456 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 829 259 303 84 68 chr11 32008908 32009230 -89834626 - RMER17C LTR ERVK -59 351 25 1 829 600 179 0 0 chr11 32009468 32009585 -89834271 + C-rich Low_complexity Low_complexity 3 119 0 1 829 360 0 0 0 chr11 32010001 32010041 -89833815 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 829 864 219 5 32 chr11 32010041 32010230 -89833626 - B3 SINE B2 -32 184 1 1 829 243 204 37 0 chr11 32010462 32010516 -89833340 + CT-rich Low_complexity Low_complexity 2 57 0 2 829 969 203 78 5 chr11 32010650 32010843 -89833013 + B3 SINE B2 10 216 0 2 829 328 341 63 23 chr11 32010848 32011022 -89832834 - L1M5 LINE L1 -1671 4475 4295 2 829 200 211 25 50 chr11 32011177 32011257 -89832599 + (TTTG)n Simple_repeat Simple_repeat 3 80 0 2 829 1138 133 26 21 chr11 32011457 32011649 -89832207 - B2_Mm2 SINE B2 -2 193 1 2 829 633 150 26 34 chr11 32012214 32012331 -89831525 - B1_Mur2 SINE Alu 0 149 34 2 829 725 223 148 72 chr11 32012347 32012637 -89831219 + MLT1A LTR MaLR 63 374 0 2 829 204 164 32 32 chr11 32012992 32013055 -89830801 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 829 385 310 62 97 chr11 32014150 32014394 -89829462 - RMER17C LTR ERVK -51 359 103 2 829 576 0 0 0 chr11 32014394 32014458 -89829398 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 829 385 310 62 97 chr11 32014458 32014585 -89829271 - RMER17C LTR ERVK -308 102 2 2 829 1171 109 11 37 chr11 32014594 32014784 -89829072 - LTRIS3 LTR ERV1 0 512 328 3 829 776 99 18 0 chr11 32015997 32016108 -89827748 + ORR1A3 LTR MaLR 214 326 0 3 829 525 291 114 51 chr11 32016442 32016757 -89827099 - MLT1J1 LTR MaLR -10 434 100 3 829 1301 279 52 21 chr11 32016776 32017200 -89826656 - MLT1C LTR MaLR -29 438 2 3 829 307 125 0 20 chr11 32017704 32017753 -89826103 + (TCTCC)n Simple_repeat Simple_repeat 4 51 0 3 829 856 181 9 0 chr11 32017753 32017969 -89825887 + CT-rich Low_complexity Low_complexity 1 218 0 3 829 252 344 35 43 chr11 32018361 32018509 -89825347 - MIRc SINE MIR -43 165 20 3 829 268 269 114 9 chr11 32018544 32018649 -89825207 - MLT1A LTR MaLR 0 374 259 3 829 323 258 66 22 chr11 32018714 32018805 -89825051 + ID_B1 SINE B4 122 216 -8 3 829 286 237 65 13 chr11 32019761 32019838 -89824018 - PB1D10 SINE Alu -36 81 1 3 829 891 138 36 0 chr11 32019849 32019987 -89823869 - B1_Mur1 SINE Alu -6 143 1 4 829 809 151 63 28 chr11 32020279 32020422 -89823434 - B1_Mus1 SINE Alu 0 148 1 4 829 572 188 0 8 chr11 32020931 32021016 -89822840 + polypyrimidine Low_complexity Low_complexity 46 130 0 4 829 1138 83 0 12 chr11 32021016 32021186 -89822670 + (TTC)n Simple_repeat Simple_repeat 3 170 0 4 829 572 188 0 8 chr11 32021186 32021229 -89822627 + polypyrimidine Low_complexity Low_complexity 3 45 0 4 829 294 88 29 14 chr11 32021820 32021889 -89821967 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 4 829 1080 66 0 0 chr11 32021890 32022027 -89821829 - B1_Mus1 SINE Alu 0 148 12 4 829 397 286 95 0 chr11 32022167 32022293 -89821563 - MLT1A1 LTR MaLR -270 138 1 4 829 1055 128 0 16 chr11 32022550 32022733 -89821123 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 829 945 131 11 6 chr11 32022756 32022933 -89820923 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 4 829 1179 117 0 0 chr11 32022954 32023134 -89820722 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 829 867 201 101 50 chr11 32023308 32023507 -89820349 + B3 SINE B2 8 216 0 4 829 408 250 38 49 chr11 32023572 32023757 -89820099 - RMER17C LTR ERVK -147 263 81 5 829 274 206 72 0 chr11 32023759 32023856 -89820000 + L1_Rod LINE L1 1228 1331 -4516 5 829 1180 273 157 16 chr11 32023986 32024672 -89819184 + L1_Mur3 LINE L1 1512 2294 -3586 5 829 1279 20 0 7 chr11 32024717 32024865 -89818991 + B1_Mus2 SINE Alu 1 147 0 5 829 216 0 0 0 chr11 32024865 32024889 -89818967 + (A)n Simple_repeat Simple_repeat 1 24 0 5 829 1187 41 7 20 chr11 32024898 32025035 -89818821 + B1_Mus2 SINE Alu 1 138 -9 5 829 252 77 0 0 chr11 32025035 32025074 -89818782 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 829 1187 41 7 20 chr11 32025074 32025085 -89818771 + B1_Mus2 SINE Alu 139 147 0 5 829 391 280 0 0 chr11 32025207 32025282 -89818574 + RSINE1 SINE B4 83 157 -8 5 829 651 83 57 45 chr11 32025326 32025502 -89818354 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 5 829 2528 133 37 2 chr11 32025567 32025973 -89817883 - MTC LTR MaLR -1 420 1 5 829 716 246 70 11 chr11 32026069 32026254 -89817602 + ORR1E LTR MaLR 4 199 -160 6 829 717 310 59 18 chr11 32026652 32026925 -89816931 - B4 SINE B4 -6 286 3 6 829 272 159 44 33 chr11 32026927 32027018 -89816838 + (CCA)n Simple_repeat Simple_repeat 2 93 0 6 829 430 274 23 38 chr11 32027042 32027175 -89816681 - B1F1 SINE Alu -2 147 17 6 829 476 224 196 27 chr11 32027245 32027429 -89816427 - MER34A1 LTR ERV1 -338 249 35 6 829 321 223 151 59 chr11 32027977 32028096 -89815760 - HAL1-3A_ME LINE L1 -654 2204 2075 6 829 214 282 14 0 chr11 32028119 32028190 -89815666 - ID4_ SINE ID -10 73 2 6 829 431 108 0 26 chr11 32028877 32028953 -89814903 + (GGGGA)n Simple_repeat Simple_repeat 4 77 0 6 829 493 332 89 17 chr11 32029052 32029288 -89814568 + MLT1B LTR MaLR 138 390 0 6 829 209 269 93 41 chr11 32029297 32029394 -89814462 + MIRc SINE MIR 82 183 -85 6 829 266 226 48 0 chr11 32029530 32029592 -89814264 + MIRm SINE MIR 110 174 -102 7 829 1266 201 154 24 chr11 32029979 32030310 -89813546 - ORR1D1 LTR MaLR 0 374 1 7 829 237 108 0 0 chr11 32030519 32030556 -89813300 + (CTG)n Simple_repeat Simple_repeat 2 38 0 7 829 266 264 96 43 chr11 32030561 32030676 -89813180 - MLT1A LTR MaLR -29 345 225 7 829 276 273 42 74 chr11 32031344 32031439 -89812417 + MT2B2 LTR ERVL 150 241 -343 7 829 485 245 0 0 chr11 32031374 32031468 -89812388 + PB1D10 SINE Alu 19 112 -5 7 829 952 194 87 0 chr11 32032281 32032477 -89811379 + B3 SINE B2 1 213 -3 7 829 1251 55 97 0 chr11 32032628 32032793 -89811063 + B2_Mm2 SINE B2 1 181 -14 7 829 388 109 0 5 chr11 32032806 32032871 -89810985 + B2_Mm2 SINE B2 47 109 -107 7 829 29 70 0 0 chr11 32032877 32032934 -89810922 + AT_rich Low_complexity Low_complexity 1 57 0 7 829 340 176 33 56 chr11 32033594 32033684 -89810172 + B1_Mur2 SINE Alu 61 148 -1 8 829 380 143 0 14 chr11 32033708 32033779 -89810077 + (TAA)n Simple_repeat Simple_repeat 2 71 0 8 829 601 317 30 0 chr11 32033907 32034074 -89809782 + B3A SINE B2 1 172 -26 8 829 297 0 0 0 chr11 32034992 32035025 -89808831 + (TTA)n Simple_repeat Simple_repeat 1 33 0 8 829 225 154 0 0 chr11 32035079 32035118 -89808738 + (TAA)n Simple_repeat Simple_repeat 1 39 0 8 829 290 275 99 28 chr11 32036390 32036532 -89807324 + MIR SINE MIR 110 261 -1 8 829 469 299 96 53 chr11 32036656 32036843 -89807013 - B3A SINE B2 -3 195 1 8 829 414 0 0 0 chr11 32036963 32037009 -89806847 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 829 1377 229 46 0 chr11 32037405 32037710 -89806146 - MTE2b LTR MaLR -34 345 27 8 829 466 291 53 73 chr11 32037711 32038013 -89805843 - MLT1D LTR MaLR -37 468 85 8 829 1275 98 0 0 chr11 32039100 32039446 -89804410 + (CA)n Simple_repeat Simple_repeat 1 346 0 9 829 1065 39 0 0 chr11 32039965 32040095 -89803761 + (GAA)n Simple_repeat Simple_repeat 1 130 0 9 829 196 214 90 103 chr11 32041120 32041198 -89802658 + MIR SINE MIR 35 111 -97 9 829 313 238 181 0 chr11 32041286 32041391 -89802465 + MIRb SINE MIR 78 201 -67 9 829 582 226 28 55 chr11 32042427 32042572 -89801284 + B1_Mur2 SINE Alu 2 142 -7 9 829 195 204 0 0 chr11 32043243 32043292 -89800564 + (CGTG)n Simple_repeat Simple_repeat 2 50 0 9 829 283 332 61 114 chr11 32043424 32043801 -89800055 - MLT1A1 LTR MaLR -6 402 46 9 829 378 340 104 77 chr11 32043886 32043987 -89799869 + L1M4 LINE L1 2864 2963 -3180 9 829 1444 66 6 0 chr11 32043987 32044169 -89799687 + B2_Mm1t SINE B2 3 185 -8 9 829 557 332 107 53 chr11 32044169 32044701 -89799155 + L1M4 LINE L1 2964 3517 -2629 9 829 869 126 0 7 chr11 32045077 32045213 -89798643 - B2_Mm2 SINE B2 0 195 61 9 829 761 305 98 39 chr11 32045889 32046295 -89797561 - MT2A LTR ERVL -102 431 2 1 829 432 329 69 48 chr11 32046402 32047050 -89796806 + L1M4 LINE L1 3721 4382 -1764 9 829 1748 167 34 39 chr11 32047093 32047449 -89796407 + ORR1B1 LTR MaLR 41 394 0 1 829 438 327 49 0 chr11 32047493 32047716 -89796140 + L1M4 LINE L1 4484 4717 -1429 9 829 818 252 98 3 chr11 32048108 32048423 -89795433 + L1_Mur3 LINE L1 3091 3435 -2445 1 829 1404 71 5 5 chr11 32048436 32048620 -89795236 + B2_Mm2 SINE B2 2 185 -10 1 829 185 222 16 0 chr11 32048786 32048849 -89795007 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 829 339 49 0 0 chr11 32048851 32048892 -89794964 - HAL1-3A_ME LINE L1 -848 2010 1970 1 829 1137 83 0 0 chr11 32050167 32050347 -89793509 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 829 871 304 39 57 chr11 32050663 32050994 -89792862 - MER2 DNA MER2_type -6 339 15 1 829 360 119 0 0 chr11 32051137 32051196 -89792660 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 829 688 326 92 54 chr11 32051199 32051295 -89792561 - MLT2B1 LTR ERVL -20 500 399 1 829 2042 100 87 77 chr11 32051295 32051685 -89792171 - ORR1B1 LTR MaLR 0 394 1 1 829 688 326 92 54 chr11 32051685 32052032 -89791824 - MLT2B1 LTR ERVL -122 398 40 1 829 856 107 107 0 chr11 32052426 32052557 -89791299 + B1_Mus1 SINE Alu 4 148 0 1 829 727 250 35 80 chr11 32052904 32053130 -89790726 - B3 SINE B2 0 216 1 1 829 671 283 37 120 chr11 32053483 32053857 -89789999 - RMER20B LTR ERVK -96 531 189 1 829 963 198 33 14 chr11 32054259 32054469 -89789387 + B3 SINE B2 3 216 0 1 829 605 124 3 10 chr11 32054772 32054903 -89788953 + B2_Mm2 SINE B2 15 177 -18 1 829 639 0 0 0 chr11 32054903 32054974 -89788882 + (GAA)n Simple_repeat Simple_repeat 1 71 0 1 829 264 315 32 38 chr11 32054982 32055167 -89788689 + L1_Mur1 LINE L1 1615 1798 -4088 1 829 553 262 0 134 chr11 32055233 32055408 -89788448 + MTD LTR MaLR 58 208 -211 1 829 488 180 189 0 chr11 32055408 32055519 -89788337 + B1_Mm SINE Alu 1 132 -15 1 829 553 262 0 134 chr11 32055519 32055537 -89788319 + MTD LTR MaLR 209 225 -194 1 829 248 0 0 30 chr11 32055537 32055570 -89788286 + (AGGGGG)n Simple_repeat Simple_repeat 1 32 0 1 829 819 156 147 22 chr11 32055590 32055774 -89788082 + MTD LTR MaLR 208 414 -5 1 829 1027 216 14 14 chr11 32055845 32056061 -89787795 - B3 SINE B2 0 216 1 1 829 230 180 16 0 chr11 32056770 32056831 -89787025 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 829 232 104 0 82 chr11 32057583 32057656 -89786200 + T-rich Low_complexity Low_complexity 1 67 0 1 829 246 62 0 0 chr11 32058510 32058542 -89785314 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 1 829 1426 41 0 6 chr11 32058817 32058989 -89784867 + B2_Mm2 SINE B2 1 171 -24 1 829 450 0 0 0 chr11 32058994 32059044 -89784812 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 829 226 260 39 52 chr11 32059250 32059327 -89784529 + ORR1B1-int LTR MaLR 240 315 -1194 1 829 836 228 102 60 chr11 32059674 32059940 -89783916 - RLTR14 LTR ERV1 -41 341 65 1 829 1356 156 4 4 chr11 32059934 32060160 -89783696 - RLTR11A LTR ERVK -14 514 289 1 829 1006 144 68 17 chr11 32060159 32060336 -89783520 + MTC LTR MaLR 236 421 0 1 829 1140 261 102 41 chr11 32060337 32060828 -89783028 - Lx8 LINE L1 -700 6773 6253 1 829 657 304 134 28 chr11 32061043 32061267 -89782589 - MER2 DNA MER2_type -31 314 73 1 829 186 43 0 0 chr11 32061267 32061290 -89782566 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 829 657 304 134 28 chr11 32061290 32061349 -89782507 - MER2 DNA MER2_type -273 72 2 1 829 1217 28 7 7 chr11 32062862 32063008 -89780848 - B1_Mus2 SINE Alu 0 147 2 1 829 201 233 0 48 chr11 32063178 32063241 -89780615 + GA-rich Low_complexity Low_complexity 4 63 0 1 829 840 273 148 12 chr11 32063248 32063578 -89780278 - MLT1B LTR MaLR -12 378 4 1 829 220 311 46 74 chr11 32063890 32064015 -89779841 + MIRb SINE MIR 42 163 -105 1 829 384 357 32 0 chr11 32064015 32064141 -89779715 + B4 SINE B4 65 194 -98 1 829 893 168 7 0 chr11 32064040 32064183 -89779673 + B1_Mur4 SINE Alu 6 149 -1 1 829 213 65 0 0 chr11 32064325 32064356 -89779500 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 829 1186 58 0 0 chr11 32064356 32064494 -89779362 - B1_Mus1 SINE Alu -9 139 2 1 829 1332 224 51 33 chr11 32064494 32064827 -89779029 - RMER20A LTR ERVK -134 382 44 1 829 573 276 130 12 chr11 32064862 32065005 -89778851 + B3A SINE B2 2 159 -39 1 829 378 121 0 0 chr11 32065005 32065071 -89778785 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 829 573 295 127 14 chr11 32065071 32065121 -89778735 + B3A SINE B2 160 216 0 1 829 243 0 0 0 chr11 32066152 32066179 -89777677 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 1 829 1718 269 162 8 chr11 32067115 32067764 -89776092 + Lx8 LINE L1 6535 7283 -190 1 829 705 208 0 0 chr11 32067902 32068022 -89775834 + B3A SINE B2 2 121 -77 1 829 306 170 0 19 chr11 32068035 32068089 -89775767 - HAL1-3A_ME LINE L1 -830 2028 1976 1 829 26 0 0 0 chr11 32068158 32068184 -89775672 + AT_rich Low_complexity Low_complexity 1 26 0 1 829 590 328 88 8 chr11 32068227 32068716 -89775140 - L1_Rod LINE L1 -3198 2649 2122 1 829 549 44 0 0 chr11 32068767 32068835 -89775021 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 829 761 298 78 44 chr11 32069198 32069802 -89774054 - L1_Rod LINE L1 -3809 2071 1460 1 829 993 283 87 21 chr11 32069990 32070073 -89773783 - ORR1E LTR MaLR -5 354 276 1 829 198 0 0 0 chr11 32070073 32070095 -89773761 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 829 993 283 87 21 chr11 32070095 32070260 -89773596 - ORR1E LTR MaLR -84 275 85 1 829 2785 18 60 21 chr11 32070260 32070593 -89773263 - ORR1A0 LTR MaLR 0 346 1 1 829 993 283 87 21 chr11 32070593 32070675 -89773181 - ORR1E LTR MaLR -275 84 2 1 829 857 311 90 82 chr11 32070706 32071281 -89772575 + RLTR18 LTR ERVK 33 612 -4 1 829 694 168 16 0 chr11 32071302 32071433 -89772423 - B1_Mus2 SINE Alu -2 148 2 1 829 246 282 83 51 chr11 32071433 32071487 -89772369 - RLTR25B LTR ERVK -618 410 352 1 829 1470 160 252 3 chr11 32071936 32072230 -89771626 + ORR1B2 LTR MaLR 1 367 0 1 829 3200 175 22 38 chr11 32072230 32072679 -89771177 + ORR1B2-int LTR MaLR 1 449 -1060 1 829 1733 21 0 0 chr11 32072679 32072872 -89770984 + B2_Mm1t SINE B2 1 193 0 1 829 3200 175 22 38 chr11 32072872 32073052 -89770804 + ORR1B2-int LTR MaLR 450 620 -889 1 829 471 252 71 36 chr11 32073062 32073202 -89770654 + B1_Mm SINE Alu 3 147 0 1 829 281 161 16 97 chr11 32073203 32073265 -89770591 + ORR1B2-int LTR MaLR 794 850 -659 1 829 1452 198 22 9 chr11 32073242 32073538 -89770318 + ORR1B2-int LTR MaLR 1019 1298 -211 1 829 607 74 0 0 chr11 32073572 32073653 -89770203 + RLTR9D LTR ERVK 18 98 -317 1 829 918 36 0 0 chr11 32073657 32073767 -89770089 - B1_Mm SINE Alu -37 110 1 1 829 1528 149 73 26 chr11 32073767 32074064 -89769792 + RLTR9D LTR ERVK 92 402 -1 1 829 831 211 59 66 chr11 32074070 32074390 -89769466 + ETnERV2-int LTR ERVK 3 320 -2994 1 829 447 52 0 0 chr11 32074390 32074448 -89769408 + (TAAAA)n Simple_repeat Simple_repeat 4 61 0 1 829 5662 100 68 16 chr11 32074448 32075400 -89768456 + ETnERV2-int LTR ERVK 1083 2085 -5321 1 829 4573 109 39 10 chr11 32075425 32076197 -89767659 + ETnERV2-int LTR ERVK 2496 3289 -4117 1 829 854 182 73 48 chr11 32076197 32076427 -89767429 + ORR1B2 LTR MaLR 139 381 -3 1 829 1257 34 0 7 chr11 32076662 32076809 -89767047 - B1_Mm SINE Alu -1 146 1 1 829 380 257 28 9 chr11 32077064 32077170 -89766686 - ORR1D2 LTR MaLR -1 369 262 1 829 1059 57 49 7 chr11 32077170 32077312 -89766544 + B1_Mus1 SINE Alu 1 148 0 1 829 543 151 0 0 chr11 32077326 32077419 -89766437 + GA-rich Low_complexity Low_complexity 2 94 0 1 829 435 19 0 0 chr11 32077508 32077560 -89766296 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 829 769 128 17 0 chr11 32077560 32077677 -89766179 - B1_Mur1 SINE Alu -13 136 18 1 829 1012 229 25 0 chr11 32077677 32077878 -89765978 - ORR1D2 LTR MaLR -158 212 7 1 829 2842 40 0 0 chr11 32079055 32079405 -89764451 + L1Md_F2 LINE L1 5237 5586 -297 1 829 8402 40 4 0 chr11 32079406 32080397 -89763459 + L1Md_F2 LINE L1 5588 6582 0 1 829 22 0 0 0 chr11 32080417 32080439 -89763417 + AT_rich Low_complexity Low_complexity 1 22 0 1 829 3360 18 39 0 chr11 32080452 32080833 -89763023 - MTA_Mm LTR MaLR 0 396 1 1 829 412 91 0 0 chr11 32080841 32080896 -89762960 + B3 SINE B2 15 69 -147 1 829 2769 167 41 48 chr11 32081266 32081833 -89762023 + RLTR20B1 LTR ERVK 1 563 0 1 829 1053 122 189 11 chr11 32081909 32082100 -89761756 - URR1B DNA MER1_type 0 225 1 1 829 186 103 0 0 chr11 32082552 32082581 -89761275 + (G)n Simple_repeat Simple_repeat 1 29 0 1 829 180 0 0 0 chr11 32082958 32082978 -89760878 + (A)n Simple_repeat Simple_repeat 1 20 0 1 829 948 236 29 5 chr11 32083236 32083445 -89760411 - B3 SINE B2 -2 214 1 1 829 660 308 128 44 chr11 32084190 32084550 -89759306 + Lx8 LINE L1 6186 6575 -898 1 829 417 212 0 0 chr11 32084715 32084800 -89759056 - Lx8 LINE L1 -321 7152 7068 1 829 189 74 0 0 chr11 32085721 32085748 -89758108 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 829 644 180 0 21 chr11 32085765 32085833 -89758023 + polypurine Low_complexity Low_complexity 3 70 0 1 829 1065 108 0 17 chr11 32085833 32086012 -89757844 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 829 644 180 0 21 chr11 32086012 32086085 -89757771 + polypurine Low_complexity Low_complexity 71 141 0 1 829 515 331 40 36 chr11 32086101 32086405 -89757451 + Lx8 LINE L1 7169 7473 0 1 829 1246 48 0 0 chr11 32086481 32086626 -89757230 + B1_Mus1 SINE Alu 2 146 -2 1 829 850 159 20 20 chr11 32086961 32087109 -89756747 + B1_Mus1 SINE Alu 1 148 0 1 829 1071 183 68 0 chr11 32087346 32087537 -89756319 + B3 SINE B2 1 204 -12 1 829 24 0 0 0 chr11 32087550 32087574 -89756282 + AT_rich Low_complexity Low_complexity 1 24 0 1 829 1168 68 0 27 chr11 32088115 32088265 -89755591 - B1_Mus1 SINE Alu -1 147 2 1 829 278 323 62 68 chr11 32089366 32089542 -89754314 + MLT1A LTR MaLR 196 370 -4 1 829 1178 197 178 34 chr11 32089703 32090023 -89753833 + ORR1D2 LTR MaLR 5 370 0 1 829 301 321 0 9 chr11 32092005 32092112 -89751744 + PB1 SINE Alu 5 110 -17 1 829 1181 69 5 0 chr11 32092116 32092321 -89751535 + (TAGA)n Simple_repeat Simple_repeat 1 206 0 1 829 522 43 0 0 chr11 32092324 32092393 -89751463 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 829 183 129 0 0 chr11 32092604 32092635 -89751221 + (CACG)n Simple_repeat Simple_repeat 1 31 0 1 829 206 343 11 33 chr11 32093429 32093613 -89750243 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 829 702 167 21 57 chr11 32095772 32095912 -89747944 - B1_Mur2 SINE Alu -9 140 6 1 829 364 241 76 133 chr11 32095912 32095930 -89747926 - B4 SINE B4 -75 217 69 1 829 222 62 0 0 chr11 32097583 32097615 -89746241 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 1 829 1660 212 112 16 chr11 32097708 32098092 -89745764 + MTC LTR MaLR 1 421 0 2 829 354 236 144 11 chr11 32098092 32098177 -89745679 - PB1D10 SINE Alu -18 99 3 2 829 446 269 300 9 chr11 32098198 32098384 -89745472 - B3 SINE B2 -1 215 1 2 829 339 244 12 12 chr11 32098396 32098479 -89745377 - ID4_ SINE ID 0 83 1 2 829 260 0 0 54 chr11 32099048 32099085 -89744771 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 2 829 878 130 0 37 chr11 32100703 32100839 -89743017 + B1_Mur4 SINE Alu 11 141 -9 2 829 635 168 0 40 chr11 32100853 32101027 -89742829 + GA-rich Low_complexity Low_complexity 2 168 0 2 829 1168 65 0 31 chr11 32101042 32101201 -89742655 + B2_Mm2 SINE B2 1 154 -41 2 829 470 46 15 0 chr11 32101349 32101414 -89742442 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 829 388 286 112 0 chr11 32101434 32101532 -89742324 + PB1D10 SINE Alu 9 117 0 2 829 557 232 106 0 chr11 32101553 32101704 -89742152 + ID_B1 SINE B4 1 167 -57 2 829 310 225 191 0 chr11 32101640 32101729 -89742127 + PB1D10 SINE Alu 12 117 0 2 829 771 197 15 8 chr11 32101832 32101965 -89741891 + B1_Mur4 SINE Alu 2 135 -15 2 829 416 223 97 0 chr11 32101968 32102071 -89741785 + ID_B1 SINE B4 112 224 0 2 829 2128 171 76 24 chr11 32102406 32102916 -89740940 + RMER4B LTR ERVK 14 585 0 2 829 1133 314 23 44 chr11 32102920 32103307 -89740549 - MT2A LTR ERVL -77 456 78 2 829 325 310 32 89 chr11 32103200 32103324 -89740532 - MTE2b LTR MaLR -200 179 63 2 829 337 226 82 12 chr11 32103382 32103467 -89740389 - MTE2b LTR MaLR -288 91 1 2 829 235 152 22 0 chr11 32103469 32103515 -89740341 - MTE2b-int LTR MaLR -2 1578 1532 2 829 315 271 44 114 chr11 32103982 32104140 -89739716 - B1F1 SINE Alu -1 148 2 2 829 676 92 18 9 chr11 32104177 32104287 -89739569 + (GGGA)n Simple_repeat Simple_repeat 3 113 0 2 829 273 238 15 45 chr11 32104289 32104355 -89739501 + B3 SINE B2 28 91 -125 2 829 456 203 146 0 chr11 32104609 32104732 -89739124 - B1_Mm SINE Alu -1 146 6 2 829 231 296 18 125 chr11 32104642 32104754 -89739102 - MT2B LTR ERVL -350 251 152 2 829 207 88 0 0 chr11 32104809 32104843 -89739013 + (TTGG)n Simple_repeat Simple_repeat 4 37 0 2 829 1069 80 22 0 chr11 32104844 32104981 -89738875 - B1_Mus2 SINE Alu -7 140 1 2 829 311 274 0 0 chr11 32105925 32105987 -89737869 - BC1_Mm scRNA scRNA -77 75 14 2 829 705 157 22 29 chr11 32106037 32106175 -89737681 + B1_Mur1 SINE Alu 13 149 0 2 829 406 109 0 0 chr11 32106311 32106366 -89737490 - ORR1A2 LTR MaLR 0 326 272 2 829 1895 83 40 64 chr11 32106429 32106725 -89737131 - ORR1A2 LTR MaLR -38 289 1 2 829 1714 182 97 6 chr11 32107061 32107403 -89736453 - ORR1D1 LTR MaLR 0 374 2 2 829 961 41 0 0 chr11 32111764 32111887 -89731969 + B1_Mm SINE Alu 25 147 0 2 829 341 223 49 142 chr11 32111765 32111927 -89731929 + B4A SINE B4 111 257 -35 2 829 363 279 44 26 chr11 32112273 32112387 -89731469 - PB1D10 SINE Alu -1 116 1 2 830 605 169 26 10 chr11 32116852 32116968 -89726888 + B1_Mur1 SINE Alu 26 222 -89 2 830 297 0 0 0 chr11 32116969 32117002 -89726854 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 2 830 286 281 69 17 chr11 32117128 32117244 -89726612 + RSINE1 SINE B4 4 125 -40 2 830 338 0 24 0 chr11 32117248 32117290 -89726566 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 2 830 830 171 28 7 chr11 32117290 32117431 -89726425 + B1_Mur2 SINE Alu 3 146 -3 2 830 252 0 0 0 chr11 32117443 32117471 -89726385 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 830 403 267 41 0 chr11 32117475 32117584 -89726272 + B1_Mur1 SINE Alu 1 113 -36 2 830 225 220 34 0 chr11 32119297 32119356 -89724500 - ID_B1 SINE B4 -7 217 157 2 830 427 270 36 9 chr11 32119533 32119632 -89724224 + PB1D10 SINE Alu 2 104 -13 2 830 270 0 0 0 chr11 32119632 32119662 -89724194 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 830 427 270 36 9 chr11 32119662 32119674 -89724182 + PB1D10 SINE Alu 105 116 -1 2 830 22 0 0 0 chr11 32122250 32122272 -89721584 + GC_rich Low_complexity Low_complexity 1 22 0 2 830 24 77 0 0 chr11 32122294 32122346 -89721510 + GC_rich Low_complexity Low_complexity 1 52 0 2 830 875 185 106 6 chr11 32123442 32123621 -89720235 - B3A SINE B2 0 198 2 2 830 394 198 112 56 chr11 32126874 32126981 -89716875 + PB1D10 SINE Alu 3 115 -2 2 830 373 250 182 18 chr11 32130366 32130476 -89713380 + MER20 DNA MER1_type 1 128 -91 2 830 344 300 152 6 chr11 32131089 32131260 -89712596 + B3A SINE B2 3 198 0 2 830 1091 72 149 12 chr11 32132281 32132449 -89711407 + B2_Mm2 SINE B2 1 191 -4 2 830 539 170 280 25 chr11 32132525 32132682 -89711174 + B3A SINE B2 2 198 0 2 830 487 242 0 0 chr11 32132703 32132798 -89711058 + ID_B1 SINE B4 91 185 -39 2 830 210 71 0 0 chr11 32133240 32133268 -89710588 + (C)n Simple_repeat Simple_repeat 1 28 0 2 830 269 111 44 0 chr11 32137702 32137747 -89706109 + B1_Mur3 SINE Alu 90 136 -13 2 830 183 42 0 0 chr11 32137747 32137771 -89706085 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 830 1442 90 16 0 chr11 32139160 32139349 -89704507 + B2_Mm2 SINE B2 1 192 -3 2 830 1068 58 73 0 chr11 32140129 32140266 -89703590 - B1_Mus2 SINE Alu 0 147 1 2 830 270 0 0 0 chr11 32140296 32140326 -89703530 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 830 297 231 62 0 chr11 32140399 32140464 -89703392 - B4A SINE B4 -6 286 218 2 830 461 239 0 22 chr11 32140509 32140599 -89703257 - RSINE1 SINE B4 -66 99 12 2 830 793 171 7 52 chr11 32140612 32140766 -89703090 - B1_Mus2 SINE Alu 0 147 1 2 830 470 285 15 8 chr11 32140766 32140897 -89702959 - B4A SINE B4 -61 231 100 2 830 591 223 49 8 chr11 32140926 32141048 -89702808 + B1_Mus1 SINE Alu 10 136 -12 2 830 240 111 0 0 chr11 32141080 32141116 -89702740 + (TATG)n Simple_repeat Simple_repeat 3 38 0 2 830 327 258 0 0 chr11 32141116 32141178 -89702678 + ID4_ SINE ID 21 82 -1 2 830 269 256 139 0 chr11 32141359 32141445 -89702411 - BC1_Mm scRNA scRNA -53 99 2 2 830 276 133 0 0 chr11 32142154 32142214 -89701642 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 830 464 219 171 0 chr11 32143938 32144061 -89699795 - B1_Mur2 SINE Alu -1 148 5 2 830 401 278 16 27 chr11 32144078 32144190 -89699666 - PB1D10 SINE Alu -1 116 6 2 830 25 0 0 0 chr11 32146100 32146125 -89697731 + AT_rich Low_complexity Low_complexity 1 25 0 2 830 1308 14 0 0 chr11 32146133 32146279 -89697577 - B1_Mus2 SINE Alu 0 147 2 2 830 357 197 0 62 chr11 32147413 32147494 -89696362 + B1_Mur1 SINE Alu 74 149 0 2 830 23 0 0 0 chr11 32148705 32148728 -89695128 + AT_rich Low_complexity Low_complexity 1 23 0 2 830 775 207 14 20 chr11 32148753 32148901 -89694955 - B1_Mur1 SINE Alu 0 149 3 2 830 232 267 107 0 chr11 32148999 32149074 -89694782 - ID4_ SINE ID 0 83 1 2 830 332 295 35 18 chr11 32149087 32149201 -89694655 - PB1D9 SINE Alu 0 120 5 2 830 398 240 165 0 chr11 32151825 32151946 -89691910 + ID_B1 SINE B4 79 219 -5 2 830 620 235 15 0 chr11 32152349 32152485 -89691371 + ID_B1 SINE B4 85 222 -2 2 830 898 188 0 7 chr11 32152489 32152639 -89691217 + B1_Mur1 SINE Alu 1 149 0 2 830 619 273 37 21 chr11 32152655 32152842 -89691014 + B3A SINE B2 4 193 -5 2 830 606 250 0 0 chr11 32153123 32153243 -89690613 - ID_B1 SINE B4 -13 211 92 2 830 542 229 20 3 chr11 32153259 32153383 -89690473 - PB1D7 SINE Alu -17 133 9 2 830 1397 89 17 0 chr11 32153481 32153661 -89690195 - B2_Mm2 SINE B2 -10 185 3 2 830 471 252 74 0 chr11 32153997 32154132 -89689724 - B1F1 SINE Alu -3 146 2 2 830 278 253 38 0 chr11 32155132 32155211 -89688645 + ID4_ SINE ID 2 83 0 2 830 1268 41 0 0 chr11 32157951 32158097 -89685759 - B1_Mus2 SINE Alu 0 147 2 2 830 808 190 144 11 chr11 32158344 32158525 -89685331 - B3 SINE B2 -11 205 1 2 830 564 229 130 14 chr11 32160655 32160822 -89683034 - ID_B1 SINE B4 -45 247 63 2 830 424 252 30 104 chr11 32161302 32161321 -89682535 + ID_B1 SINE B4 73 158 -66 2 830 735 150 45 0 chr11 32161321 32161454 -89682402 + B1_Mur4 SINE Alu 6 144 -6 2 830 424 252 30 104 chr11 32161454 32161466 -89682390 + ID_B1 SINE B4 159 224 0 2 830 626 47 24 0 chr11 32161469 32161554 -89682302 + (GAAA)n Simple_repeat Simple_repeat 3 89 0 2 830 432 248 45 30 chr11 32161688 32161821 -89682035 - ID_B1 SINE B4 0 224 90 2 830 401 271 4 12 chr11 32162058 32162160 -89681696 + ID_B1 SINE B4 35 138 -154 2 830 189 74 0 0 chr11 32162161 32162188 -89681668 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 830 872 96 0 0 chr11 32162337 32162462 -89681394 - B1_Mur4 SINE Alu 0 150 26 2 830 475 304 133 18 chr11 32163184 32163522 -89680334 + L1MB4 LINE L1 5799 6175 -5 2 830 218 263 73 73 chr11 32163528 32163543 -89680313 + ID4_ SINE ID 1 46 -37 2 830 226 196 103 35 chr11 32163543 32163601 -89680255 + tRNA-Ala-GCY_ tRNA tRNA 6 67 -8 2 830 609 219 87 7 chr11 32163977 32164115 -89679741 + B1_Mur1 SINE Alu 1 149 0 2 830 516 207 40 24 chr11 32164469 32164593 -89679263 + ID_B1 SINE B4 2 127 -97 2 830 692 203 65 0 chr11 32164908 32165046 -89678810 + B1_Mur2 SINE Alu 1 147 -2 2 830 391 304 13 70 chr11 32165124 32165280 -89678576 + B1F1 SINE Alu 2 148 -1 2 830 405 58 0 0 chr11 32165427 32165479 -89678377 + (A)n Simple_repeat Simple_repeat 1 52 0 2 830 713 237 22 0 chr11 32165512 32165651 -89678205 - B1_Mur1 SINE Alu -5 144 3 3 830 651 303 70 4 chr11 32166048 32166277 -89677579 - B4A SINE B4 -19 273 30 3 830 264 278 72 0 chr11 32166285 32166382 -89677474 + L1MC LINE L1 5722 5825 -2057 3 830 853 77 31 0 chr11 32166390 32166520 -89677336 + B1_Mur4 SINE Alu 6 139 -11 3 830 468 0 0 0 chr11 32166598 32166650 -89677206 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 830 262 277 8 8 chr11 32167180 32167285 -89676571 - PB1D7 SINE Alu -36 113 9 3 830 348 271 122 0 chr11 32168445 32168552 -89675304 + PB1 SINE Alu 1 120 -7 3 830 240 303 30 0 chr11 32168559 32168625 -89675231 + ID4 SINE ID 8 75 -8 3 830 225 277 44 88 chr11 32168625 32168650 -89675206 + ID_B1 SINE B4 8 94 -130 3 830 459 0 0 0 chr11 32170002 32170053 -89673803 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 830 465 19 0 0 chr11 32170119 32170173 -89673683 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 3 830 869 146 31 0 chr11 32170173 32170303 -89673553 - B1_Mus2 SINE Alu -13 134 1 3 830 373 274 0 50 chr11 32170351 32170451 -89673405 + ID_B1 SINE B4 130 224 0 3 830 388 237 0 40 chr11 32170517 32170618 -89673238 - B1F SINE Alu -44 105 9 3 830 890 149 0 34 chr11 32170650 32170796 -89673060 + B1_Mur3 SINE Alu 9 149 0 3 830 223 349 16 0 chr11 32170858 32170921 -89672935 + BC1_Mm scRNA scRNA 17 80 -72 3 830 1076 108 0 6 chr11 32171048 32171215 -89672641 + (GAA)n Simple_repeat Simple_repeat 3 168 0 3 830 230 304 131 37 chr11 32171245 32171436 -89672420 + L1M5 LINE L1 5367 5575 -869 3 830 988 241 10 0 chr11 32171476 32171683 -89672173 + ID_B1 SINE B4 2 210 -14 3 830 655 231 0 45 chr11 32172046 32172200 -89671656 - B1_Mur2 SINE Alu -1 148 2 3 830 482 211 37 37 chr11 32172208 32172319 -89671537 - L1M4 LINE L1 -571 5603 5490 3 830 240 86 0 0 chr11 32172319 32172354 -89671502 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 830 871 139 14 21 chr11 32172354 32172494 -89671362 - B1_Mus1 SINE Alu -9 139 1 3 830 482 211 37 37 chr11 32172494 32172543 -89671313 - L1M4 LINE L1 -685 5489 5443 3 830 1306 85 68 0 chr11 32172560 32172737 -89671119 - B2_Mm2 SINE B2 -6 189 1 3 830 262 338 103 44 chr11 32172757 32172893 -89670963 - ID_B1 SINE B4 -3 221 78 3 830 635 229 117 50 chr11 32172979 32173122 -89670734 + B3A SINE B2 5 158 -37 3 830 369 0 0 0 chr11 32173122 32173163 -89670693 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 830 419 229 117 50 chr11 32173163 32173198 -89670658 + B2_Mm2 SINE B2 159 194 -1 3 830 739 193 246 23 chr11 32173329 32173504 -89670352 - B3 SINE B2 0 216 3 3 830 325 169 0 33 chr11 32173550 32173611 -89670245 + B1_Mur4 SINE Alu 2 60 -90 3 830 394 0 0 162 chr11 32173612 32173822 -89670034 + (CAGAG)n Simple_repeat Simple_repeat 5 180 0 3 830 627 104 10 20 chr11 32173825 32173923 -89669933 + B1_Mur4 SINE Alu 43 139 -11 3 830 467 45 15 0 chr11 32173923 32173989 -89669867 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 3 830 373 261 67 0 chr11 32174011 32174130 -89669726 + L1MC LINE L1 4719 4845 -1301 3 830 589 275 0 34 chr11 32174130 32174277 -89669579 + RSINE1 SINE B4 3 144 -21 3 830 252 238 0 0 chr11 32174387 32174429 -89669427 - ID4_ SINE ID -13 70 29 3 830 240 255 0 56 chr11 32174429 32174441 -89669415 - ID SINE ID -153 71 21 3 830 479 271 16 65 chr11 32174480 32174725 -89669131 + L1MD2 LINE L1 4878 5110 -1036 3 830 600 235 51 7 chr11 32174737 32174874 -89668982 + B1_Mur2 SINE Alu 1 143 -6 3 830 606 216 0 0 chr11 32174902 32175013 -89668843 - B1_Mur2 SINE Alu -8 141 31 3 830 543 283 207 33 chr11 32175361 32175941 -89667915 + L1MD2 LINE L1 5259 5939 -420 3 830 252 0 0 0 chr11 32177183 32177211 -89666645 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 830 444 19 0 0 chr11 32177211 32177263 -89666593 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 830 276 30 0 0 chr11 32180029 32180062 -89663794 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3 830 573 312 6 24 chr11 32180402 32180566 -89663290 + RSINE1 SINE B4 5 165 0 3 830 247 280 39 39 chr11 32181076 32181180 -89662676 + GA-rich Low_complexity Low_complexity 4 107 0 3 830 188 238 0 16 chr11 32182461 32182525 -89661331 + GA-rich Low_complexity Low_complexity 4 66 0 3 830 249 33 0 0 chr11 32182588 32182618 -89661238 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 3 830 311 331 33 8 chr11 32182829 32182951 -89660905 - PB1 SINE Alu -2 125 1 3 830 334 264 24 50 chr11 32183017 32183133 -89660723 + PB1 SINE Alu 22 220 -91 3 830 294 311 29 0 chr11 32183134 32183237 -89660619 + GA-rich Low_complexity Low_complexity 1 106 0 3 830 180 116 186 0 chr11 32183816 32183859 -89659997 + L3 LINE CR1 1386 1436 -3053 3 830 735 71 0 0 chr11 32184868 32184966 -89658890 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 3 830 556 278 20 152 chr11 32184966 32185049 -89658807 - ID_B1 SINE B4 -13 211 155 3 830 1193 68 0 0 chr11 32185049 32185197 -89658659 - B1_Mus1 SINE Alu 0 148 1 3 830 556 278 20 152 chr11 32185197 32185317 -89658539 - ID_B1 SINE B4 -70 154 35 3 830 433 310 75 40 chr11 32185359 32185708 -89658148 + L1MB4 LINE L1 5781 6141 -39 3 830 1002 133 71 11 chr11 32185977 32186159 -89657697 - B2_Mm2 SINE B2 -2 193 1 3 830 604 218 15 22 chr11 32186208 32186344 -89657512 - B1F2 SINE Alu -12 137 3 3 830 886 236 39 0 chr11 32186383 32186586 -89657270 - B3 SINE B2 -5 211 1 3 830 345 253 18 100 chr11 32187877 32187987 -89655869 - ID_B1 SINE B4 -1 223 123 3 830 1014 33 0 0 chr11 32188060 32188182 -89655674 + (TTTC)n Simple_repeat Simple_repeat 1 122 0 3 830 1269 110 17 0 chr11 32188182 32188355 -89655501 - B2_Mm2 SINE B2 -17 178 3 3 830 225 0 0 0 chr11 32189256 32189281 -89654575 + (A)n Simple_repeat Simple_repeat 1 25 0 3 830 1504 265 12 7 chr11 32189502 32189916 -89653940 - Lx9 LINE L1 -835 6809 6394 3 830 748 255 38 29 chr11 32189916 32190126 -89653730 - MTD LTR MaLR 0 419 208 3 830 472 281 17 18 chr11 32190296 32190423 -89653433 + B3A SINE B2 1 117 -81 3 830 1057 156 11 11 chr11 32190423 32190611 -89653245 + B2_Mm2 SINE B2 1 188 -7 3 830 432 309 15 121 chr11 32190611 32190682 -89653174 + B3 SINE B2 114 178 -38 3 830 218 283 33 0 chr11 32190700 32190760 -89653096 - B1_Mur1 SINE Alu -21 128 67 3 830 270 0 0 0 chr11 32190773 32190803 -89653053 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 830 1165 62 0 0 chr11 32190803 32190948 -89652908 - B1_Mus1 SINE Alu -3 145 1 3 830 612 228 8 8 chr11 32191074 32191198 -89652658 - B3 SINE B2 -91 125 2 3 830 566 269 14 28 chr11 32191233 32191378 -89652478 + B1_Mur1 SINE Alu 7 149 0 3 830 297 0 0 0 chr11 32191467 32191500 -89652356 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 830 882 78 0 0 chr11 32191500 32191615 -89652241 - B1_Mus1 SINE Alu -32 116 2 3 830 295 250 8 15 chr11 32191615 32191642 -89652214 - ORR1B1-int LTR MaLR -862 647 622 3 830 1010 204 36 5 chr11 32191633 32191825 -89652031 - B3 SINE B2 -7 209 12 3 830 186 208 0 0 chr11 32191842 32191895 -89651961 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 830 305 279 142 52 chr11 32191896 32191964 -89651892 + HAL1-3A_ME LINE L1 1976 2049 -809 3 830 429 279 7 58 chr11 32191964 32192101 -89651755 - B1_Mur3 SINE Alu -19 130 1 3 830 305 279 142 52 chr11 32192101 32192187 -89651669 + HAL1-3A_ME LINE L1 2050 2144 -714 3 830 480 229 139 0 chr11 32192202 32192324 -89651532 + B1_Mur3 SINE Alu 5 143 -6 3 830 615 314 5 49 chr11 32192825 32192875 -89650981 - B3A SINE B2 -1 197 148 3 830 342 0 0 0 chr11 32192875 32192913 -89650943 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 830 615 314 5 49 chr11 32192913 32193066 -89650790 - B3A SINE B2 -51 147 3 3 830 1279 41 0 0 chr11 32193079 32193226 -89650630 - B1_Mus1 SINE Alu 0 148 2 3 830 1090 105 0 0 chr11 32193283 32193426 -89650430 + B1_Mus1 SINE Alu 5 147 -1 3 830 866 181 11 0 chr11 32193426 32193603 -89650253 + GA-rich Low_complexity Low_complexity 1 179 0 3 830 426 342 7 0 chr11 32193753 32193902 -89649954 + GA-rich Low_complexity Low_complexity 2 151 0 3 830 246 62 0 0 chr11 32195427 32195459 -89648397 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 830 313 300 12 0 chr11 32195569 32195649 -89648207 - ID4_ SINE ID -2 81 1 3 830 355 314 33 8 chr11 32195664 32195786 -89648070 - PB1 SINE Alu -2 125 1 3 830 320 294 19 19 chr11 32195864 32195968 -89647888 + PB1 SINE Alu 22 125 -2 3 830 294 311 29 0 chr11 32195969 32196072 -89647784 + GA-rich Low_complexity Low_complexity 1 106 0 3 830 228 275 72 0 chr11 32196096 32196165 -89647691 + RMER4A LTR ERVK 370 443 -23 3 830 180 116 186 0 chr11 32196633 32196676 -89647180 + L3 LINE CR1 1386 1436 -3053 3 830 327 130 0 0 chr11 32197686 32197740 -89646116 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 3 830 953 121 23 0 chr11 32197742 32197916 -89645940 + (TC)n Simple_repeat Simple_repeat 2 179 0 3 830 758 272 71 19 chr11 32197920 32198094 -89645762 - ID_B1 SINE B4 -2 222 37 3 830 258 81 0 0 chr11 32198094 32198131 -89645725 + (CATA)n Simple_repeat Simple_repeat 2 38 0 3 830 758 272 71 19 chr11 32198131 32198166 -89645690 - ID SINE ID -188 36 2 3 830 390 328 40 17 chr11 32198166 32198467 -89645389 + L1MB7 LINE L1 5790 6097 -87 3 830 1275 118 5 5 chr11 32198595 32198782 -89645074 - B2_Mm2 SINE B2 -7 188 2 3 830 1027 138 66 11 chr11 32199000 32199183 -89644673 - B2_Mm2 SINE B2 -2 193 1 3 830 617 211 15 22 chr11 32199232 32199368 -89644488 - B1F2 SINE Alu -12 137 3 3 830 872 246 39 0 chr11 32199407 32199610 -89644246 - B3 SINE B2 -5 211 1 3 830 810 0 0 0 chr11 32199660 32199750 -89644106 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 830 365 341 102 0 chr11 32202203 32202370 -89641486 - MER2 DNA MER2_type -159 186 3 3 830 211 326 42 37 chr11 32202759 32202919 -89640937 - MIRb SINE MIR -59 209 40 3 830 279 284 84 0 chr11 32204732 32204827 -89639029 + L1MD1 LINE L1 6121 6223 -19 4 830 799 292 119 14 chr11 32204848 32204914 -89638942 - MTD LTR MaLR -1 418 347 4 830 332 59 0 19 chr11 32204914 32204966 -89638890 + (GGTTG)n Simple_repeat Simple_repeat 2 52 0 4 830 799 279 93 72 chr11 32204966 32205243 -89638613 - MTD LTR MaLR -73 346 13 4 830 315 0 0 0 chr11 32205270 32205305 -89638551 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 830 893 185 22 11 chr11 32205316 32205496 -89638360 + ORR1C2 LTR MaLR 1 182 -196 4 830 447 182 0 0 chr11 32205496 32205617 -89638239 + CT-rich Low_complexity Low_complexity 1 121 0 4 830 1076 160 54 24 chr11 32205617 32205822 -89638034 + ORR1C2 LTR MaLR 172 382 -2 4 830 405 246 182 7 chr11 32206149 32206292 -89637564 - RMER15 LTR ERVL 0 575 408 4 830 377 313 15 15 chr11 32206398 32206534 -89637322 - Lx8 LINE L1 -303 7170 7035 4 830 287 331 139 19 chr11 32206781 32207116 -89636740 - MLT2C2 LTR ERVL -14 383 1 4 830 434 308 181 30 chr11 32207685 32207983 -89635873 + MER2 DNA MER2_type 3 345 0 4 830 702 245 0 0 chr11 32208533 32208865 -89634991 + (CA)n Simple_repeat Simple_repeat 1 332 0 4 830 1416 143 0 39 chr11 32210429 32210662 -89633194 - URR1B DNA MER1_type 0 225 2 4 830 220 233 123 28 chr11 32211427 32211533 -89632323 - MIRc SINE MIR -87 181 66 4 830 1199 50 0 0 chr11 32212159 32212299 -89631557 + B1_Mm SINE Alu 1 140 -7 4 830 1151 112 0 6 chr11 32212299 32212479 -89631377 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 830 352 286 58 42 chr11 32212619 32212809 -89631047 + RLTR21 LTR ERVK 1124 1316 -256 4 830 346 339 9 0 chr11 32212838 32212947 -89630909 - PB1D10 SINE Alu -7 110 1 4 830 323 305 10 40 chr11 32213238 32213337 -89630519 - ID_B1 SINE B4 -8 216 121 4 830 263 318 59 44 chr11 32213337 32213367 -89630489 - B1F SINE Alu -2 128 11 4 830 651 104 0 0 chr11 32214510 32214625 -89629231 + (TC)n Simple_repeat Simple_repeat 2 116 0 4 830 480 287 55 65 chr11 32215249 32215611 -89628245 + ORR1E LTR MaLR 1 348 -31 4 830 1168 192 305 83 chr11 32216936 32217372 -89626484 - MT2A LTR ERVL 0 533 1 4 830 270 108 0 0 chr11 32217372 32217409 -89626447 - MT2B LTR ERVL -564 37 1 4 830 1081 280 70 118 chr11 32217561 32218205 -89625651 + RLTR18 LTR ERVK 4 616 0 4 830 395 281 53 0 chr11 32218863 32218977 -89624879 - B1F2 SINE Alu -26 123 4 4 830 749 215 91 75 chr11 32219779 32220020 -89623836 - B4 SINE B4 0 292 48 4 830 219 150 0 0 chr11 32220027 32220067 -89623789 + (T)n Simple_repeat Simple_repeat 1 40 0 4 830 1217 204 108 30 chr11 32220188 32220522 -89623334 - BGLII_B LTR ERVK -10 431 72 4 830 987 216 109 4 chr11 32221721 32221968 -89621888 + MTEb LTR MaLR 105 377 -2 4 830 3873 286 164 20 chr11 32221970 32223351 -89620505 + MTEb-int LTR MaLR 1 1579 -1 4 830 331 273 0 0 chr11 32223423 32223489 -89620367 + MTEa LTR MaLR 107 172 -207 4 830 1190 81 0 0 chr11 32223490 32223638 -89620218 + B1_Mus1 SINE Alu 1 148 0 4 830 811 130 7 30 chr11 32223851 32223986 -89619870 - B2_Mm1a SINE B2 0 193 62 4 830 691 218 17 39 chr11 32223976 32224168 -89619688 - B3 SINE B2 -13 182 1 4 830 221 344 55 70 chr11 32224199 32224399 -89619457 - MIR SINE MIR -55 213 17 4 830 744 110 8 25 chr11 32224599 32224720 -89619136 + RMER17A2 LTR ERVK 788 906 0 4 830 180 0 0 0 chr11 32225079 32225099 -89618757 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 830 216 135 36 71 chr11 32225133 32225189 -89618667 - ID SINE ID -169 55 2 4 830 432 0 0 0 chr11 32225654 32225702 -89618154 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 830 351 283 42 85 chr11 32225747 32225936 -89617920 + L1MDa LINE L1 1188 1368 -5265 4 830 402 354 11 23 chr11 32226347 32226610 -89617246 + L1_Mur3 LINE L1 1954 2213 -3667 4 830 369 263 42 0 chr11 32226619 32226737 -89617119 + L1_Mur3 LINE L1 4171 4293 -1587 4 830 239 261 33 4 chr11 32226837 32226936 -89616920 - L1M2 LINE L1 -4039 2510 2383 4 830 669 118 91 0 chr11 32227391 32227501 -89616355 + B1_Mur4 SINE Alu 24 143 -7 4 830 231 114 0 0 chr11 32227510 32227554 -89616302 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 4 830 6956 121 30 16 chr11 32227557 32228688 -89615168 - MERVL_2A-int LTR ERVL -3037 2724 1531 4 830 221 0 35 0 chr11 32228803 32228832 -89615024 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 830 414 0 0 0 chr11 32228832 32228877 -89614979 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 830 1966 127 50 69 chr11 32229005 32229384 -89614472 - RLTR11B LTR ERVK -81 372 1 4 830 309 282 35 130 chr11 32230073 32230131 -89613725 + MER96B DNA hAT 236 277 -140 4 830 215 31 31 0 chr11 32230131 32230163 -89613693 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 830 309 282 35 130 chr11 32230163 32230304 -89613552 + MER96B DNA hAT 278 416 -1 4 830 545 236 85 23 chr11 32230761 32230891 -89612965 + B1F SINE Alu 12 149 0 4 830 1215 50 0 0 chr11 32231562 32231702 -89612154 - B1_Mus1 SINE Alu -8 140 1 4 830 450 0 0 0 chr11 32231792 32231842 -89612014 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 830 742 184 7 52 chr11 32232269 32232424 -89611432 + B1_Mur1 SINE Alu 2 149 0 4 830 221 178 22 0 chr11 32232538 32232583 -89611273 + B4 SINE B4 2 47 -245 4 830 578 270 27 114 chr11 32232659 32232843 -89611013 - B4 SINE B4 -40 252 85 4 830 442 234 56 9 chr11 32232839 32232947 -89610909 - Charlie12 DNA MER1_type -463 2410 2298 4 830 1106 241 65 132 chr11 32232947 32232977 -89610879 + MTE2b LTR MaLR 13 39 -340 4 830 1089 153 109 38 chr11 32232977 32233188 -89610668 - URR1A DNA MER1_type 0 226 1 4 830 1106 242 67 127 chr11 32233188 32233546 -89610310 + MTE2b LTR MaLR 40 359 -20 4 830 870 275 11 159 chr11 32233558 32234004 -89609852 - Charlie12 DNA MER1_type -578 2295 1916 4 830 447 250 141 22 chr11 32234027 32234162 -89609694 + B4A SINE B4 48 198 -94 4 830 893 224 25 25 chr11 32234162 32234363 -89609493 + B3 SINE B2 3 203 -13 4 830 264 59 0 0 chr11 32234363 32234397 -89609459 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 830 656 206 306 0 chr11 32234433 32234593 -89609263 + B3 SINE B2 1 209 -7 4 830 1147 273 47 60 chr11 32234645 32235109 -89608747 - Charlie12 DNA MER1_type -944 1929 1472 4 830 834 260 71 5 chr11 32235207 32235404 -89608452 - B3 SINE B2 0 216 7 4 830 543 317 54 81 chr11 32235392 32235615 -89608241 - Charlie12 DNA MER1_type -1472 1401 1185 4 830 261 0 0 0 chr11 32235682 32235711 -89608145 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 830 394 18 36 0 chr11 32236142 32236197 -89607659 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 830 5750 131 31 15 chr11 32236250 32237131 -89606725 - RMER19B LTR ERVK -7 895 1 4 830 227 158 17 17 chr11 32237451 32237509 -89606347 + (TTTG)n Simple_repeat Simple_repeat 1 58 0 4 830 378 0 0 0 chr11 32237555 32237597 -89606259 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 830 2145 180 123 38 chr11 32237599 32238077 -89605779 + RLTR11A LTR ERVK 6 524 -4 4 830 329 122 20 0 chr11 32238750 32238799 -89605057 + tRNA-Lys-AAG tRNA tRNA 27 76 0 4 830 559 303 47 34 chr11 32238831 32239277 -89604579 - RLTR15 LTR ERVK -37 322 1 4 830 255 391 58 7 chr11 32239792 32239931 -89603925 + L2a LINE L2 3279 3424 -2 4 830 362 286 143 71 chr11 32240696 32240990 -89602866 - L2 LINE L2 -340 3079 2765 4 830 242 354 35 17 chr11 32241458 32241573 -89602283 + MLT1A1 LTR MaLR 270 386 -22 4 830 306 0 0 0 chr11 32242697 32242731 -89601125 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 830 225 108 0 0 chr11 32242826 32242863 -89600993 + (ATG)n Simple_repeat Simple_repeat 1 37 0 4 830 683 209 44 23 chr11 32243044 32243204 -89600652 - B3A SINE B2 0 195 34 4 830 1224 88 0 0 chr11 32243208 32243379 -89600477 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 4 830 183 147 0 0 chr11 32243379 32243408 -89600448 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 4 103 2347 63 9 54 chr11 32243487 32243821 -89600035 + ORR1A2 LTR MaLR 1 319 -8 4 831 630 259 27 0 chr11 32244061 32244208 -89599648 - RSINE1 SINE B4 -13 152 2 4 831 1518 209 127 11 chr11 32244232 32244594 -89599262 - MTD LTR MaLR 0 419 16 4 831 901 282 17 49 chr11 32244655 32244942 -89598914 - B4A SINE B4 -14 278 1 4 831 201 343 113 63 chr11 32245259 32245480 -89598376 + MIR SINE MIR 22 253 -9 4 831 778 283 78 60 chr11 32245616 32245767 -89598089 + L1MB3 LINE L1 5401 5552 -631 4 831 931 161 34 45 chr11 32245767 32245943 -89597913 + B2_Mm2 SINE B2 3 176 -19 4 831 778 283 78 60 chr11 32245943 32246377 -89597479 + L1MB3 LINE L1 5553 5996 -187 4 831 285 75 0 0 chr11 32247046 32247086 -89596770 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 4 831 32 43 0 0 chr11 32247663 32247709 -89596147 + GC_rich Low_complexity Low_complexity 1 46 0 4 831 228 130 0 53 chr11 32247721 32247824 -89596032 + G-rich Low_complexity Low_complexity 1 97 0 4 831 185 219 0 0 chr11 32248463 32248495 -89595361 - MIRc SINE MIR -122 146 115 4 831 209 171 0 0 chr11 32249115 32249150 -89594706 + C-rich Low_complexity Low_complexity 1 35 0 4 831 191 267 33 0 chr11 32249656 32249716 -89594140 + MIRb SINE MIR 114 175 -93 4 831 274 275 53 42 chr11 32250065 32250160 -89593696 - MER20 DNA MER1_type -96 123 28 4 831 444 317 61 139 chr11 32250162 32250602 -89593254 - MLT1A1 LTR MaLR -2 406 1 4 831 704 144 68 54 chr11 32251075 32251222 -89592634 - B1_Mur3 SINE Alu 0 149 1 4 831 249 206 0 161 chr11 32251455 32251542 -89592314 - RLTR25B LTR ERVK -501 527 455 4 831 434 160 67 0 chr11 32251475 32251550 -89592306 - PB1D9 SINE Alu 0 120 41 4 831 1212 149 40 0 chr11 32251551 32251752 -89592104 + B3 SINE B2 3 211 -5 4 831 195 343 30 20 chr11 32252488 32252589 -89591267 - MIR SINE MIR -84 178 77 4 831 732 257 58 5 chr11 32253642 32253830 -89590026 - B3A SINE B2 0 198 1 4 831 1135 112 78 6 chr11 32253906 32254086 -89589770 + B2_Mm1t SINE B2 1 193 0 4 831 2498 118 43 18 chr11 32255499 32255897 -89587959 - MTC LTR MaLR 0 421 14 5 831 359 273 191 13 chr11 32258470 32258622 -89585234 + MIR SINE MIR 72 250 -12 5 831 1179 109 4 0 chr11 32258752 32259019 -89584837 + (TTTC)n Simple_repeat Simple_repeat 1 268 0 5 831 300 122 392 0 chr11 32259019 32259093 -89584763 - PB1D9 SINE Alu 0 120 18 5 831 254 296 12 24 chr11 32259560 32259643 -89584213 + MER2 DNA MER2_type 146 227 -118 5 831 553 250 25 0 chr11 32259917 32260037 -89583819 - B1F SINE Alu -26 123 1 5 831 560 308 39 16 chr11 32260187 32260444 -89583412 - L1MA7 LINE L1 -30 6270 6008 5 831 1344 134 137 27 chr11 32260447 32260756 -89583100 + MTC LTR MaLR 45 400 0 5 831 713 277 176 5 chr11 32260763 32261195 -89582661 - L1MA7 LINE L1 -370 5921 5416 5 831 246 250 40 71 chr11 32261253 32261352 -89582504 + MIR SINE MIR 81 176 -86 5 831 267 321 25 0 chr11 32261617 32261698 -89582158 + MIRb SINE MIR 44 126 -142 5 831 326 218 44 44 chr11 32262362 32262453 -89581403 + PB1D10 SINE Alu 27 117 0 5 831 705 222 22 0 chr11 32262486 32262621 -89581235 - B1_Mur1 SINE Alu -8 141 4 5 831 1198 159 55 5 chr11 32262644 32262846 -89581010 + URR1B DNA MER1_type 4 215 -10 5 831 283 314 10 10 chr11 32264729 32264832 -89579024 + CT-rich Low_complexity Low_complexity 2 104 0 5 831 755 169 35 56 chr11 32264991 32265135 -89578721 - B1_Mus1 SINE Alu -7 141 1 5 831 228 271 83 0 chr11 32265231 32265327 -89578529 - L1MA6 LINE L1 -30 6270 6167 5 831 180 0 0 0 chr11 32265357 32265377 -89578479 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 831 1046 68 6 145 chr11 32265428 32265600 -89578256 - B1_Mus1 SINE Alu 0 148 1 5 831 251 307 11 0 chr11 32265602 32265690 -89578166 - L1MA6 LINE L1 -169 6131 6043 5 831 382 312 37 25 chr11 32266745 32266906 -89576950 - MER113 DNA MER1_type -32 489 327 5 831 359 230 69 0 chr11 32268148 32268235 -89575621 + Tigger5 DNA MER2_type 2314 2406 0 5 831 1158 318 84 25 chr11 32268374 32268922 -89574934 - MER82 DNA MER2_type -24 629 50 5 831 1159 134 37 0 chr11 32269637 32269824 -89574032 - B2_Mm2 SINE B2 0 195 2 5 831 200 382 11 0 chr11 32269940 32270029 -89573827 + MIR3 SINE MIR 110 199 -9 5 831 225 237 0 33 chr11 32270046 32270107 -89573749 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 5 831 296 261 0 0 chr11 32270130 32270199 -89573657 + L1MA5 LINE L1 6209 6277 -23 5 831 23 54 0 0 chr11 32270215 32270252 -89573604 + AT_rich Low_complexity Low_complexity 1 37 0 5 831 260 234 76 75 chr11 32270677 32270795 -89573061 - MIRc SINE MIR -61 207 85 5 831 231 358 60 20 chr11 32270964 32271115 -89572741 - MIR SINE MIR -78 184 28 5 831 345 243 112 37 chr11 32271139 32271246 -89572610 - MLT1A1 LTR MaLR -3 405 291 5 831 660 67 0 0 chr11 32272259 32272349 -89571507 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 5 831 1248 84 0 0 chr11 32272365 32272544 -89571312 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 5 831 2115 135 118 23 chr11 32273099 32273532 -89570324 - ORR1B1 LTR MaLR -8 386 1 5 831 260 323 21 0 chr11 32275562 32275655 -89568201 + MIR SINE MIR 63 157 -105 5 831 278 285 62 14 chr11 32275776 32275986 -89567870 + RMER17D2 LTR ERVK 230 449 -360 5 831 1821 126 52 16 chr11 32276431 32276738 -89567118 - ORR1A3 LTR MaLR -8 318 1 5 831 223 179 0 0 chr11 32277170 32277209 -89566647 + MIRc SINE MIR 93 131 -137 5 831 184 351 13 26 chr11 32277216 32277292 -89566564 - L2b LINE L2 -199 3176 3102 5 831 201 321 113 28 chr11 32277345 32277486 -89566370 - MIRb SINE MIR -29 239 87 5 831 369 0 0 0 chr11 32277749 32277790 -89566066 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 831 266 252 55 31 chr11 32277925 32278052 -89565804 + L1MB3 LINE L1 6052 6181 -2 5 831 215 73 49 0 chr11 32278057 32278098 -89565758 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 5 831 467 316 91 0 chr11 32278761 32278948 -89564908 + MIRc SINE MIR 65 268 0 5 831 200 247 141 64 chr11 32279190 32279268 -89564588 - L2c LINE L2 -19 3368 3285 5 831 277 305 12 0 chr11 32279391 32279476 -89564380 + ID4 SINE ID 9 94 -58 5 831 291 213 34 56 chr11 32279792 32279903 -89563953 + B1_Mur2 SINE Alu 41 147 -2 5 831 530 193 193 0 chr11 32280499 32280618 -89563238 - B1F2 SINE Alu -7 142 1 5 831 305 250 149 94 chr11 32281004 32281185 -89562671 + B3A SINE B2 2 192 -6 5 831 185 267 97 75 chr11 32281478 32281571 -89562285 - L4 LINE RTE -836 1193 1099 5 831 1148 223 132 56 chr11 32281630 32281972 -89561884 - MTD LTR MaLR -2 417 50 5 831 4446 101 60 47 chr11 32282385 32283131 -89560725 - RMER6A LTR ERVK 0 756 1 5 831 262 45 45 0 chr11 32283239 32283283 -89560573 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 5 831 552 223 136 17 chr11 32284707 32284973 -89558883 - MTC LTR MaLR -14 405 68 5 831 248 175 0 0 chr11 32284973 32285013 -89558843 + T-rich Low_complexity Low_complexity 1 40 0 5 831 2503 65 30 18 chr11 32285563 32285893 -89557963 - L1_Mus2 LINE L1 -1 6565 6232 5 831 294 213 24 85 chr11 32285893 32285952 -89557904 - MTC LTR MaLR -344 77 19 5 831 186 43 0 0 chr11 32285952 32285975 -89557881 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 831 294 213 24 85 chr11 32285975 32285997 -89557859 - MTC LTR MaLR -403 18 1 5 831 273 357 45 23 chr11 32286334 32286466 -89557390 + MER20B DNA MER1_type 45 179 -604 5 831 235 280 13 0 chr11 32286915 32286990 -89556866 + L1MA7 LINE L1 5913 5988 -303 5 831 2602 50 3 0 chr11 32287120 32287438 -89556418 - ORR1A2 LTR MaLR -8 319 1 5 831 357 242 0 0 chr11 32287609 32287671 -89556185 + tRNA-Ala-GCY_ tRNA tRNA 2 63 -12 5 831 329 288 12 12 chr11 32287671 32287686 -89556170 + ID4_ SINE ID 7 83 0 5 831 744 324 164 0 chr11 32288439 32288683 -89555173 + B4A SINE B4 5 288 -4 5 831 201 211 0 37 chr11 32288702 32288756 -89555100 + (CAGAGA)n Simple_repeat Simple_repeat 6 57 0 5 831 297 295 35 9 chr11 32288756 32288869 -89554987 + L1ME1 LINE L1 4370 4485 -1661 5 831 521 211 68 34 chr11 32288881 32288999 -89554857 + B1_Mur2 SINE Alu 21 142 -7 5 831 483 90 0 0 chr11 32289138 32289216 -89554640 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 831 263 328 53 23 chr11 32289460 32289591 -89554265 - MLT1B LTR MaLR -5 462 328 5 831 397 233 162 22 chr11 32289614 32289750 -89554106 - MLT1B LTR MaLR -193 197 43 5 831 573 266 5 63 chr11 32289795 32289869 -89553987 + L1ME1 LINE L1 4935 5004 -1142 5 831 558 313 119 34 chr11 32289869 32290137 -89553719 + B4A SINE B4 2 292 0 5 831 573 281 25 60 chr11 32290137 32290305 -89553551 + L1ME1 LINE L1 5005 5180 -966 5 831 228 294 75 7 chr11 32290385 32290532 -89553324 + ORR1B1-int LTR MaLR 598 754 -755 5 831 409 273 101 95 chr11 32290411 32290569 -89553287 + B4 SINE B4 65 223 -69 5 831 884 107 61 0 chr11 32290441 32290572 -89553284 + B1_Mus2 SINE Alu 9 147 0 5 831 689 224 13 33 chr11 32290709 32290861 -89552995 + B1_Mur1 SINE Alu 1 149 0 5 831 320 267 13 13 chr11 32290996 32291072 -89552784 + PB1D10 SINE Alu 32 107 -10 5 831 244 242 0 15 chr11 32291112 32291179 -89552677 + L1ME1 LINE L1 5662 5727 -452 5 831 270 311 102 9 chr11 32291225 32291505 -89552351 + L1ME1 LINE L1 5832 6143 -36 5 831 203 395 0 0 chr11 32291618 32291704 -89552152 - MIRb SINE MIR -62 206 121 5 831 242 300 32 43 chr11 32292078 32292172 -89551684 + MLT1A1 LTR MaLR 316 408 0 5 831 329 303 147 13 chr11 32292682 32292839 -89551017 - LTR82B Low_complexity ERVL -2 828 651 5 831 238 230 92 0 chr11 32293123 32293210 -89550646 + L1M5 LINE L1 5092 5186 -960 5 831 871 154 15 0 chr11 32293683 32293819 -89550037 - B1_Mur2 SINE Alu 0 149 12 5 831 327 338 0 0 chr11 32293831 32293905 -89549951 - ID4_ SINE ID -9 74 1 5 831 364 247 0 43 chr11 32293924 32294017 -89549839 - MLT1A1 LTR MaLR 0 408 320 5 831 1328 174 14 0 chr11 32294466 32294679 -89549177 + B3 SINE B2 1 216 0 5 831 297 0 0 0 chr11 32296191 32296224 -89547632 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 831 492 306 75 25 chr11 32296224 32296385 -89547471 + MER5A DNA MER1_type 21 189 0 5 831 218 237 13 0 chr11 32297171 32297247 -89546609 + (TGGA)n Simple_repeat Simple_repeat 2 78 0 5 831 280 200 50 0 chr11 32297972 32298032 -89545824 + ID2 SINE ID 2 64 -19 5 831 693 162 35 0 chr11 32298055 32298228 -89545628 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 831 948 149 0 13 chr11 32299510 32299660 -89544196 - B1_Mus1 SINE Alu 0 148 1 5 831 1366 94 10 5 chr11 32299811 32300004 -89543852 - B2_Mm2 SINE B2 -1 194 1 5 831 283 254 27 53 chr11 32300418 32300493 -89543363 - MER58C DNA MER1_type 0 215 143 5 831 207 162 0 0 chr11 32300525 32300562 -89543294 + CT-rich Low_complexity Low_complexity 3 39 0 5 831 693 224 118 0 chr11 32300591 32300761 -89543095 + B3 SINE B2 20 209 -7 5 831 693 250 62 34 chr11 32300892 32301070 -89542786 + B3A SINE B2 1 183 -15 5 831 623 311 116 25 chr11 32301310 32301663 -89542193 - MLT1J LTR MaLR -7 505 121 5 831 405 0 0 0 chr11 32302727 32302772 -89541084 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 831 719 311 176 20 chr11 32305066 32305525 -89538331 - MER21B LTR ERV1 -60 803 273 5 831 1073 122 48 32 chr11 32306353 32306540 -89537316 + URR1A DNA MER1_type 37 226 0 5 831 26 0 0 0 chr11 32306609 32306635 -89537221 + AT_rich Low_complexity Low_complexity 1 26 0 5 831 223 250 194 74 chr11 32306884 32306992 -89536864 + MIRb SINE MIR 115 235 -33 5 831 566 244 110 15 chr11 32307203 32307403 -89536453 + MER2 DNA MER2_type 1 219 -126 5 831 276 271 120 24 chr11 32308170 32308275 -89535581 + MIRb SINE MIR 29 142 -126 5 831 333 0 0 0 chr11 32309151 32309188 -89534668 + (A)n Simple_repeat Simple_repeat 1 37 0 5 831 502 221 10 34 chr11 32309362 32309494 -89534362 + PB1D10 SINE Alu 1 117 0 5 831 744 12 0 0 chr11 32309676 32309761 -89534095 + (TTC)n Simple_repeat Simple_repeat 3 87 0 6 831 1125 89 0 20 chr11 32309766 32309915 -89533941 - B1_Mus1 SINE Alu -1 147 2 6 831 234 250 78 0 chr11 32309983 32310047 -89533809 - MLT1K LTR MaLR -373 222 154 6 831 234 0 0 0 chr11 32310250 32310276 -89533580 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 6 831 238 296 78 29 chr11 32311013 32311183 -89532673 - L2a LINE L2 -42 3384 3215 6 831 205 279 0 0 chr11 32312350 32312393 -89531463 + polypyrimidine Low_complexity Low_complexity 2 44 0 6 831 668 195 23 0 chr11 32312393 32312521 -89531335 - B1_Mur4 SINE Alu -7 143 13 6 831 411 313 118 7 chr11 32312643 32312778 -89531078 - MER63A DNA AcHobo -60 150 1 6 831 231 290 134 45 chr11 32313007 32313119 -89530737 + MIR SINE MIR 20 141 -67 6 831 195 100 0 0 chr11 32315165 32315195 -89528661 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 831 243 321 26 26 chr11 32315402 32315517 -89528339 - MLT1J LTR MaLR -370 142 28 6 831 773 163 8 8 chr11 32316196 32316326 -89527530 - B1_Mur1 SINE Alu -15 134 5 6 831 357 267 220 75 chr11 32317285 32317518 -89526338 - L1MB8 LINE L1 -4 6174 5899 6 831 1868 159 56 49 chr11 32317518 32317909 -89525947 - ORR1B1 LTR MaLR 0 394 1 6 831 357 267 220 75 chr11 32317909 32317930 -89525926 - L1MB8 LINE L1 -280 5898 5883 6 831 1035 209 31 0 chr11 32317954 32318150 -89525706 - B3 SINE B2 0 216 15 6 831 892 163 15 0 chr11 32319058 32319193 -89524663 + B1_Mur4 SINE Alu 1 137 -13 6 831 275 289 20 56 chr11 32319193 32319384 -89524472 + MER2 DNA MER2_type 64 249 -96 6 831 215 211 42 0 chr11 32319384 32319479 -89524377 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 831 378 238 55 39 chr11 32319480 32319607 -89524249 + L1MCa LINE L1 1887 2015 -4493 6 831 234 377 0 13 chr11 32319907 32319985 -89523871 + ID4_ SINE ID 4 80 -3 6 831 436 198 55 25 chr11 32320842 32320963 -89522893 - B1_Mus1 SINE Alu -25 123 7 6 831 186 301 27 14 chr11 32321262 32321336 -89522520 + MIRb SINE MIR 116 190 -78 6 831 536 264 89 12 chr11 32321372 32321541 -89522315 - MLT1B LTR MaLR -1 389 208 6 831 445 266 65 0 chr11 32321574 32321698 -89522158 - MLT1B LTR MaLR -254 136 5 6 831 337 328 76 56 chr11 32321813 32322010 -89521846 - MamRep137 DNA TcMar? -43 401 201 6 831 428 244 116 16 chr11 32324367 32324496 -89519360 - MIRb SINE MIR -110 158 17 6 831 201 241 85 17 chr11 32324906 32324965 -89518891 - MIR SINE MIR -116 92 30 6 831 279 0 0 0 chr11 32326622 32326653 -89517203 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 831 215 329 26 0 chr11 32326892 32326968 -89516888 + ID4 SINE ID 6 83 0 6 831 212 340 27 36 chr11 32326968 32327002 -89516854 + ID_B1 SINE B4 6 114 -110 6 831 998 243 141 31 chr11 32329155 32329580 -89514276 - L1MB3 LINE L1 -23 6160 5689 6 831 690 223 8 0 chr11 32329582 32329712 -89514144 + B1F SINE Alu 1 131 -18 6 831 375 265 9 141 chr11 32329721 32329790 -89514066 + B2_Mm2 SINE B2 1 69 -126 6 831 1294 102 11 0 chr11 32329790 32329967 -89513889 + B2_Mm1t SINE B2 2 180 -13 6 831 375 265 9 141 chr11 32329967 32330117 -89513739 + B2_Mm2 SINE B2 70 191 -4 6 831 265 259 8 100 chr11 32330043 32330163 -89513693 - U2 snRNA snRNA -79 109 1 6 831 244 289 132 0 chr11 32330169 32330245 -89513611 + B3A SINE B2 61 146 -52 6 831 378 0 0 0 chr11 32330255 32330297 -89513559 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 831 654 147 198 0 chr11 32330307 32330423 -89513433 + B1_Mur4 SINE Alu 2 140 -10 6 831 294 29 0 0 chr11 32330423 32330458 -89513398 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 831 242 254 58 29 chr11 32330458 32330527 -89513329 + RLTR25A LTR ERVK 503 573 -530 6 831 668 152 0 0 chr11 32330470 32330575 -89513281 + B1_Mus2 SINE Alu 43 147 0 6 831 464 298 6 69 chr11 32330627 32330800 -89513056 + RSINE1 SINE B4 4 165 0 6 831 5103 82 0 12 chr11 32330817 32331500 -89512356 + L1_Mus1 LINE L1 5892 6566 -1 6 831 737 326 30 19 chr11 32331724 32331990 -89511866 - B4A SINE B4 -23 269 1 6 831 1183 203 5 0 chr11 32332248 32332450 -89511406 + B3 SINE B2 1 203 -13 6 831 258 338 0 0 chr11 32332984 32333065 -89510791 + ID4_ SINE ID 12 92 -60 6 831 182 37 37 0 chr11 32333090 32333117 -89510739 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 831 989 128 206 6 chr11 32333170 32333350 -89510506 - B3 SINE B2 0 216 1 6 831 193 0 61 30 chr11 32333370 32333403 -89510453 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 831 291 256 38 60 chr11 32333725 32333858 -89509998 + Charlie16a DNA MER1_type 136 265 -77 6 831 1763 109 27 17 chr11 32334060 32334478 -89509378 - ORR1A2 LTR MaLR 0 394 1 6 831 311 320 0 0 chr11 32334546 32334624 -89509232 + B4A SINE B4 2 79 -213 6 831 571 241 30 8 chr11 32334635 32334769 -89509087 + B1_Mur1 SINE Alu 5 141 -8 6 831 744 166 6 12 chr11 32335005 32335170 -89508686 + CT-rich Low_complexity Low_complexity 3 166 0 6 831 679 171 16 0 chr11 32335184 32335313 -89508543 - B1_Mur1 SINE Alu -1 148 18 6 831 326 326 126 52 chr11 32335325 32335555 -89508301 - B4A SINE B4 -45 247 1 6 831 719 62 0 0 chr11 32336340 32336437 -89507419 + B1_Mus1 SINE Alu 40 136 -12 6 831 320 0 0 24 chr11 32336438 32336479 -89507377 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 831 300 332 96 19 chr11 32336590 32336799 -89507057 - MER113 DNA MER1_type -132 389 165 6 831 230 167 66 16 chr11 32337281 32337342 -89506514 + L2c LINE L2 3225 3288 -99 6 831 23 0 0 0 chr11 32337940 32337963 -89505893 + AT_rich Low_complexity Low_complexity 1 23 0 6 831 215 135 27 0 chr11 32337999 32338036 -89505820 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 831 433 240 265 11 chr11 32338135 32338320 -89505536 - MTE2a LTR MaLR 0 379 148 6 831 951 221 180 63 chr11 32338333 32338695 -89505161 - MTD LTR MaLR -15 404 1 6 831 600 292 14 7 chr11 32338716 32338861 -89504995 - MTE2a LTR MaLR -230 149 4 6 831 476 276 166 6 chr11 32338869 32339044 -89504812 - B4A SINE B4 -86 206 4 6 831 429 339 127 0 chr11 32339208 32339373 -89504483 + MLT1K LTR MaLR 4 189 -406 6 831 1299 77 54 5 chr11 32339499 32339683 -89504173 - B2_Mm2 SINE B2 0 195 3 6 831 244 257 260 41 chr11 32339778 32339924 -89503932 + MLT1K LTR MaLR 400 577 -18 6 831 1912 222 58 16 chr11 32340098 32340584 -89503272 + RLTR19C LTR ERVK 1 506 0 6 831 234 0 0 0 chr11 32340633 32340659 -89503197 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 831 1248 48 0 0 chr11 32340660 32340807 -89503049 - B1_Mus2 SINE Alu 0 147 1 6 831 362 151 0 14 chr11 32341620 32341694 -89502162 + CT-rich Low_complexity Low_complexity 2 74 0 6 831 225 205 0 0 chr11 32341927 32341966 -89501890 - L1M3c LINE L1 -4656 1485 1447 6 831 2773 18 0 0 chr11 32342166 32342507 -89501349 + ORR1A0 LTR MaLR 1 341 -5 6 831 322 257 46 37 chr11 32342507 32342616 -89501240 + PB1D10 SINE Alu 1 110 -7 6 831 1380 263 79 75 chr11 32342622 32343089 -89500767 - L1MB8 LINE L1 -280 5898 5429 6 831 1141 164 38 9 chr11 32343089 32343299 -89500557 - B3 SINE B2 0 216 1 6 831 1380 263 79 75 chr11 32343299 32343390 -89500466 - L1MB8 LINE L1 -750 5428 5338 6 831 325 302 104 0 chr11 32343401 32343507 -89500349 + ID_B1 SINE B4 100 216 -8 6 831 279 227 180 25 chr11 32343528 32343650 -89500206 - L1MB8 LINE L1 -826 5320 5180 6 831 635 225 239 110 chr11 32343701 32343770 -89500086 - B4A SINE B4 -4 288 243 6 831 420 160 198 10 chr11 32343770 32343871 -89499985 - PB1D9 SINE Alu 0 120 1 6 831 635 225 239 110 chr11 32343871 32344056 -89499800 - B4A SINE B4 -50 242 1 6 831 233 154 0 19 chr11 32344065 32344118 -89499738 - B1_Mur2 SINE Alu -9 140 89 6 831 869 290 21 4 chr11 32344221 32344501 -89499355 - L1MB8 LINE L1 -1021 5125 4841 6 831 620 254 26 66 chr11 32345069 32345175 -89498681 + Lx8 LINE L1 7250 7349 -124 6 831 1273 94 10 35 chr11 32345175 32345374 -89498482 + B2_Mm2 SINE B2 1 194 -1 6 831 620 254 26 66 chr11 32345374 32345495 -89498361 + Lx8 LINE L1 7350 7467 -6 6 831 289 208 0 54 chr11 32345523 32345579 -89498277 + ID4_ SINE ID 15 67 -16 6 831 437 200 122 0 chr11 32346039 32346129 -89497727 + PB1D7 SINE Alu 1 101 -19 6 831 249 196 0 0 chr11 32346551 32346602 -89497254 - ID_B1 SINE B4 0 224 174 6 831 213 222 0 0 chr11 32346661 32346715 -89497141 + T-rich Low_complexity Low_complexity 1 54 0 6 831 614 176 8 40 chr11 32346717 32346841 -89497015 - PB1D9 SINE Alu 0 120 1 6 831 1762 33 5 0 chr11 32346878 32347088 -89496768 + L1_Mus1 LINE L1 6357 6567 0 6 831 243 0 0 0 chr11 32347130 32347157 -89496699 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6 831 771 179 7 7 chr11 32347169 32347299 -89496557 + B1_Mur4 SINE Alu 9 139 -11 6 831 1206 55 0 7 chr11 32347299 32347447 -89496409 + B1_Mus2 SINE Alu 1 147 0 6 831 225 0 0 0 chr11 32347565 32347590 -89496266 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 831 1081 185 50 0 chr11 32347646 32347846 -89496010 - B3 SINE B2 -6 210 1 6 831 1162 56 0 7 chr11 32348039 32348182 -89495674 - B1_Mus1 SINE Alu -2 146 5 6 831 255 31 0 0 chr11 32348207 32348239 -89495617 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 831 23 0 0 0 chr11 32348413 32348436 -89495420 + AT_rich Low_complexity Low_complexity 1 23 0 6 831 332 261 11 11 chr11 32348904 32348997 -89494859 + MLT1A0 LTR MaLR 62 154 -211 6 831 385 284 20 0 chr11 32349000 32349102 -89494754 + B1F2 SINE Alu 2 105 -44 6 831 229 250 18 0 chr11 32349160 32349216 -89494640 + MLT1A0 LTR MaLR 352 408 0 6 831 2183 127 92 31 chr11 32349839 32350228 -89493628 + RMER1B Other Other 654 1066 0 6 831 537 286 249 25 chr11 32350239 32350676 -89493180 + LTR41 LTR ERVL 6 540 -228 6 831 782 171 17 6 chr11 32350739 32350916 -89492940 + CT-rich Low_complexity Low_complexity 1 179 0 6 831 705 151 53 86 chr11 32350934 32351086 -89492770 - B1_Mus2 SINE Alu 0 147 1 7 831 218 209 0 0 chr11 32351452 32351495 -89492361 + MER5A DNA MER1_type 72 114 -75 7 831 909 264 116 15 chr11 32351675 32352082 -89491774 + L1M4 LINE L1 4256 4703 -1443 7 831 333 0 0 0 chr11 32352240 32352277 -89491579 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 831 1138 68 7 0 chr11 32352487 32352633 -89491223 - B1_Mus1 SINE Alu -1 147 1 7 831 23 0 0 0 chr11 32352635 32352658 -89491198 + AT_rich Low_complexity Low_complexity 1 23 0 7 831 314 217 0 14 chr11 32352751 32352821 -89491035 - B4A SINE B4 -8 284 216 7 831 337 273 0 0 chr11 32352874 32352951 -89490905 + B4 SINE B4 214 290 -2 7 831 465 229 55 9 chr11 32352972 32353082 -89490774 + PB1D9 SINE Alu 1 115 -5 7 831 204 40 0 0 chr11 32353128 32353153 -89490703 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 831 563 257 14 7 chr11 32354004 32354149 -89489707 - L1M5 LINE L1 -457 5667 5522 7 831 23 0 0 0 chr11 32354200 32354223 -89489633 + AT_rich Low_complexity Low_complexity 1 23 0 7 831 258 32 0 0 chr11 32354290 32354321 -89489535 + (A)n Simple_repeat Simple_repeat 1 31 0 7 831 264 193 43 43 chr11 32355213 32355305 -89488551 + (CCGGG)n Simple_repeat Simple_repeat 4 95 0 7 831 280 299 20 20 chr11 32355303 32355453 -89488403 + G-rich Low_complexity Low_complexity 2 151 0 7 831 333 235 0 23 chr11 32357107 32357194 -89486662 + PB1D10 SINE Alu 31 115 -2 7 831 342 0 0 0 chr11 32357667 32357705 -89486151 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 7 831 881 59 0 0 chr11 32357705 32357818 -89486038 - B1_Mm SINE Alu -4 143 31 7 831 344 204 43 217 chr11 32357731 32357743 -89486113 - MT2B LTR ERVL -337 264 199 7 831 383 205 0 24 chr11 32357743 32357821 -89486035 - PB1D10 SINE Alu -18 99 23 7 831 1511 59 5 0 chr11 32357821 32358007 -89485849 - B2_Mm1a SINE B2 -6 187 1 7 831 344 204 43 217 chr11 32358013 32358054 -89485802 - MT2B LTR ERVL -403 198 151 7 831 265 175 159 0 chr11 32358341 32358404 -89485452 - RSINE1 SINE B4 -38 127 55 7 831 233 374 88 29 chr11 32358714 32358885 -89484971 - MIRb SINE MIR 0 268 88 7 831 644 110 90 45 chr11 32359007 32359140 -89484716 - B1_Mus2 SINE Alu 0 147 9 7 831 1448 260 85 24 chr11 32359275 32359863 -89483993 - L1MB8 LINE L1 -231 5947 5324 7 831 292 203 49 175 chr11 32359895 32360038 -89483818 - L1MB8 LINE L1 -914 5232 5108 7 831 334 254 48 6 chr11 32360295 32360397 -89483459 - PB1D10 SINE Alu -47 103 1 7 831 39 0 0 0 chr11 32360406 32360445 -89483411 + AT_rich Low_complexity Low_complexity 1 39 0 7 831 477 233 20 95 chr11 32360448 32360595 -89483261 - B3 SINE B2 -6 210 75 7 831 732 208 0 14 chr11 32360880 32361026 -89482830 + ID_B1 SINE B4 81 224 0 7 831 423 213 32 0 chr11 32361071 32361165 -89482691 + PB1D9 SINE Alu 2 98 -22 7 831 705 200 122 6 chr11 32361255 32361411 -89482445 - B3A SINE B2 -24 174 1 7 831 367 244 12 12 chr11 32361431 32361514 -89482342 + ID_B1 SINE B4 79 161 -63 7 831 720 216 12 14 chr11 32361655 32361848 -89482008 + B3 SINE B2 1 192 -3 7 831 753 194 14 0 chr11 32361938 32362077 -89481779 - B1_Mus1 SINE Alu -1 147 7 7 831 1288 58 92 0 chr11 32362358 32362532 -89481324 - B2_Mm2 SINE B2 -3 192 3 7 831 497 228 51 82 chr11 32362913 32363071 -89480785 - RSINE1 SINE B4 -10 155 3 7 831 460 219 48 0 chr11 32363407 32363512 -89480344 - ORR1E LTR MaLR -249 110 1 7 831 305 309 0 0 chr11 32363642 32363723 -89480133 - ID4_ SINE ID 0 83 3 7 831 1259 222 139 50 chr11 32364294 32364986 -89478870 + RMER1A Other Other 86 1063 -3 7 831 705 160 0 8 chr11 32365019 32365139 -89478717 + PB1D9 SINE Alu 2 120 0 7 831 759 267 62 5 chr11 32365317 32365528 -89478328 - B4A SINE B4 -67 225 3 7 831 605 273 73 24 chr11 32365615 32365780 -89478076 - ID_B1 SINE B4 -31 193 21 7 831 336 235 35 23 chr11 32367387 32367474 -89476382 + PB1D9 SINE Alu 28 115 -5 7 831 1723 115 144 110 chr11 32368052 32368433 -89475423 + ORR1B1 LTR MaLR 1 394 0 7 831 644 176 26 84 chr11 32368869 32369024 -89474832 - B1_Mur2 SINE Alu -3 146 1 7 831 261 175 134 60 chr11 32369047 32369114 -89474742 - PB1D7 SINE Alu 0 120 49 7 831 308 261 134 9 chr11 32369170 32369282 -89474574 + B1F SINE Alu 24 149 0 7 831 767 117 23 8 chr11 32369338 32369467 -89474389 - B1_Mus1 SINE Alu 0 148 18 7 831 182 62 31 0 chr11 32369484 32369516 -89474340 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 831 1168 48 14 7 chr11 32369517 32369663 -89474193 - B1_Mm SINE Alu 0 147 1 7 831 234 0 0 0 chr11 32369702 32369728 -89474128 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 831 602 281 0 7 chr11 32369736 32369872 -89473984 - RSINE1 SINE B4 -21 144 10 7 831 387 323 109 75 chr11 32369921 32369995 -89473861 + B4A SINE B4 8 215 -77 7 831 390 284 79 0 chr11 32369995 32370122 -89473734 + B1F SINE Alu 1 137 -12 7 831 26 64 0 0 chr11 32370807 32370854 -89473002 + AT_rich Low_complexity Low_complexity 1 47 0 7 831 459 82 0 0 chr11 32371062 32371135 -89472721 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 7 831 549 232 32 0 chr11 32371638 32371763 -89472093 - ID_B1 SINE B4 -2 222 94 7 831 1055 224 9 5 chr11 32372176 32372391 -89471465 + B3 SINE B2 1 216 0 7 831 216 122 0 0 chr11 32372503 32372544 -89471312 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 7 831 1895 138 6 97 chr11 32372710 32373072 -89470784 - ORR1A4 LTR MaLR 0 329 1 7 831 532 267 44 7 chr11 32373288 32373424 -89470432 - RSINE1 SINE B4 -21 144 4 7 831 216 136 67 17 chr11 32373606 32373666 -89470190 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 7 831 382 162 0 14 chr11 32373941 32374010 -89469846 + tRNA-Val-GTG tRNA tRNA 1 68 -8 7 831 255 94 18 54 chr11 32374018 32374074 -89469782 + L1_Mus1 LINE L1 6514 6567 0 7 831 607 307 51 17 chr11 32374474 32374709 -89469147 + B4 SINE B4 14 256 -36 7 832 225 269 31 51 chr11 32374910 32375008 -89468848 + ORR1E LTR MaLR 95 190 -169 7 832 695 207 14 14 chr11 32375022 32375169 -89468687 - B1F SINE Alu 0 149 3 7 832 997 139 11 11 chr11 32375432 32375607 -89468249 - B2_Mm2 SINE B2 -8 187 13 7 832 396 291 92 7 chr11 32375943 32376085 -89467771 - RSINE1 SINE B4 0 165 12 7 832 414 0 0 0 chr11 32376487 32376533 -89467323 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 832 447 252 113 8 chr11 32376533 32376657 -89467199 - B1F SINE Alu -10 139 3 7 832 1016 184 40 5 chr11 32376762 32376964 -89466892 - B3 SINE B2 -3 213 5 7 832 237 233 102 58 chr11 32377071 32377208 -89466648 - L1M4 LINE L1 -3454 3190 3048 7 832 862 154 0 0 chr11 32377210 32377340 -89466516 + B1_Mur2 SINE Alu 1 130 -19 7 832 431 211 28 19 chr11 32377415 32377521 -89466335 + PB1D7 SINE Alu 13 119 -1 7 832 234 284 102 25 chr11 32377614 32377849 -89466007 - L1M4 LINE L1 -3762 2882 2630 7 832 778 206 6 46 chr11 32378441 32378614 -89465242 + B3 SINE B2 51 216 0 7 832 315 248 40 4 chr11 32378615 32378721 -89465135 + B1_Mm SINE Alu 1 142 -5 7 832 432 0 0 0 chr11 32378742 32378790 -89465066 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 7 832 678 153 56 8 chr11 32378874 32378999 -89464857 - B1_Mur4 SINE Alu -13 137 7 7 832 600 252 22 15 chr11 32379201 32379338 -89464518 + RSINE1 SINE B4 4 141 -24 7 832 369 43 0 0 chr11 32379338 32379385 -89464471 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 832 714 145 97 13 chr11 32379597 32379751 -89464105 - URR1A DNA MER1_type 0 226 60 7 832 1023 142 0 0 chr11 32380995 32381143 -89462713 - B1_Mus1 SINE Alu 0 148 1 7 832 1122 106 89 0 chr11 32381157 32381336 -89462520 - B2_Mm2 SINE B2 0 195 1 7 832 329 347 67 10 chr11 32381338 32381533 -89462323 - L1M4 LINE L1 -5727 815 610 7 832 342 301 0 10 chr11 32381614 32381718 -89462138 - PB1D10 SINE Alu -13 104 2 7 832 282 333 0 0 chr11 32381794 32381857 -89461999 - ID4 SINE ID -20 63 1 7 832 292 345 28 7 chr11 32381861 32382004 -89461852 - L1M4 LINE L1 -6075 467 322 7 832 426 279 29 0 chr11 32382102 32382242 -89461614 - L1M4 LINE L1 -6372 170 27 7 832 627 251 53 43 chr11 32382299 32382486 -89461370 - B3 SINE B2 -1 215 27 7 832 691 251 77 85 chr11 32382514 32382970 -89460886 - RLTR11B LTR ERVK -61 466 1 7 832 4593 191 47 75 chr11 32383002 32384229 -89459627 - MYSERV6-int LTR ERVK 0 8959 7768 7 832 270 288 115 19 chr11 32384233 32384389 -89459467 - RMER4A LTR ERVK -43 423 253 7 832 189 0 0 0 chr11 32384406 32384427 -89459429 + (A)n Simple_repeat Simple_repeat 1 21 0 7 832 332 292 104 18 chr11 32384473 32384693 -89459163 - L1MEf LINE L1 -4467 1933 1695 7 832 238 207 60 130 chr11 32384744 32384772 -89459084 - L1MC LINE L1 -2493 3653 3634 7 832 1481 70 5 5 chr11 32384772 32384960 -89458896 + B2_Mm2 SINE B2 1 188 -7 7 832 238 207 60 130 chr11 32384960 32385031 -89458825 - L1MC LINE L1 -2513 3633 3561 7 832 463 245 18 35 chr11 32385109 32385223 -89458633 + B1F SINE Alu 1 112 -37 7 832 987 279 32 18 chr11 32385237 32385522 -89458334 + B4A SINE B4 2 290 -2 7 832 569 140 19 0 chr11 32385600 32385707 -89458149 + CT-rich Low_complexity Low_complexity 2 110 0 7 832 537 217 75 0 chr11 32385708 32385828 -89458028 - ID_B1 SINE B4 0 224 96 7 832 712 206 0 47 chr11 32385980 32386128 -89457728 + ID_B1 SINE B4 83 223 -1 7 832 588 29 0 0 chr11 32386399 32386469 -89457387 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 832 302 0 26 0 chr11 32387332 32387370 -89456486 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 832 599 124 0 0 chr11 32387382 32387471 -89456385 - B1_Mus2 SINE Alu 0 147 59 8 832 744 171 73 27 chr11 32387589 32387739 -89456117 + B2_Mm2 SINE B2 5 161 -34 8 832 297 0 0 0 chr11 32387741 32387774 -89456082 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 8 832 416 238 123 47 chr11 32388134 32388240 -89455616 - PB1D9 SINE Alu -6 114 1 8 832 263 280 27 0 chr11 32388326 32388401 -89455455 + PB1D10 SINE Alu 41 117 0 8 832 717 234 134 40 chr11 32388421 32388750 -89455106 - L1MEf LINE L1 -5376 1039 680 7 832 646 299 70 53 chr11 32389242 32389318 -89454538 - B4A SINE B4 -7 285 202 8 832 701 254 109 20 chr11 32389318 32389519 -89454337 + ID_B1 SINE B4 3 221 -3 8 832 646 299 70 53 chr11 32389519 32389686 -89454170 - B4A SINE B4 -91 201 38 8 832 1011 93 42 18 chr11 32389732 32389897 -89453959 + B2_Mm2 SINE B2 2 170 -25 8 832 226 282 77 61 chr11 32390017 32390198 -89453658 - L1MEf LINE L1 -5979 436 253 7 832 543 168 9 0 chr11 32390227 32390334 -89453522 + B1_Mur3 SINE Alu 42 149 0 8 832 724 291 69 52 chr11 32390671 32391033 -89452823 - MLT-int LTR MaLR -1147 588 221 8 832 316 248 339 0 chr11 32391133 32391254 -89452602 - RSINE1 SINE B4 -2 163 2 8 832 703 140 0 26 chr11 32391651 32391768 -89452088 - B1_Mus2 SINE Alu 0 147 34 8 832 428 318 89 53 chr11 32391820 32392004 -89451852 - MLT1A0 LTR MaLR 0 365 164 8 832 727 78 17 0 chr11 32392004 32392120 -89451736 + (TC)n Simple_repeat Simple_repeat 1 118 0 8 832 428 318 89 53 chr11 32392120 32392145 -89451711 - MLT1A0 LTR MaLR -202 163 135 8 832 815 196 28 0 chr11 32392145 32392288 -89451568 - B1_Mur4 SINE Alu -3 147 1 8 832 428 318 89 53 chr11 32392288 32392359 -89451497 - MLT1A0 LTR MaLR -231 134 75 8 832 271 309 61 19 chr11 32392572 32392756 -89451100 - L1MD3 LINE L1 -1157 6885 6689 8 832 1134 53 0 0 chr11 32392764 32392916 -89450940 + B2_Mm2 SINE B2 1 152 -43 8 832 423 0 0 0 chr11 32392919 32392966 -89450890 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 832 933 155 14 0 chr11 32393092 32393240 -89450616 + B1_Mur4 SINE Alu 1 150 0 8 832 234 0 0 0 chr11 32393882 32393908 -89449948 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 832 414 0 0 0 chr11 32393908 32393953 -89449903 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 832 289 347 73 0 chr11 32393989 32394113 -89449743 - B4 SINE B4 -90 202 70 8 832 418 183 0 0 chr11 32394312 32394383 -89449473 + B3A SINE B2 2 72 -126 8 832 1011 202 35 15 chr11 32394589 32394790 -89449066 + B3 SINE B2 2 206 -10 8 832 991 147 0 0 chr11 32395264 32395407 -89448449 - B1_Mus2 SINE Alu 0 147 5 8 832 736 137 25 32 chr11 32395726 32396041 -89447815 + GA-rich Low_complexity Low_complexity 1 312 0 8 832 379 48 46 0 chr11 32397160 32397233 -89446623 - B1_Mus2 SINE Alu 0 147 43 8 832 225 0 0 0 chr11 32397255 32397280 -89446576 + (GGGGA)n Simple_repeat Simple_repeat 1 25 0 8 832 579 15 0 0 chr11 32397283 32397351 -89446505 + (GA)n Simple_repeat Simple_repeat 1 68 0 8 832 957 61 0 15 chr11 32397859 32397992 -89445864 - B1_Mus1 SINE Alu -1 147 17 8 832 180 0 83 28 chr11 32397995 32398031 -89445825 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 8 832 436 185 21 11 chr11 32398031 32398124 -89445732 - B1_Mur3 SINE Alu -10 139 46 8 832 897 223 68 65 chr11 32398152 32398430 -89445426 - B4 SINE B4 -12 280 2 8 832 348 24 0 0 chr11 32398461 32398502 -89445354 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 8 832 397 274 24 0 chr11 32398505 32398639 -89445217 - B4A SINE B4 -80 212 1 8 832 251 114 23 0 chr11 32398642 32398686 -89445170 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 8 832 552 194 36 18 chr11 32398696 32398806 -89445050 - PB1D9 SINE Alu -7 113 2 8 832 563 254 0 0 chr11 32398878 32398996 -89444860 + PB1D7 SINE Alu 3 120 0 8 832 21 71 0 0 chr11 32399518 32399560 -89444296 + AT_rich Low_complexity Low_complexity 1 42 0 8 832 962 160 193 0 chr11 32399560 32399741 -89444115 - B3 SINE B2 0 216 1 8 832 28 0 0 0 chr11 32399785 32399813 -89444043 + AT_rich Low_complexity Low_complexity 1 28 0 8 832 1202 49 0 0 chr11 32399815 32399959 -89443897 - B1_Mm SINE Alu -3 144 1 8 832 511 235 139 73 chr11 32400218 32400383 -89443473 + B3A SINE B2 7 182 -16 8 832 232 191 21 0 chr11 32400389 32400436 -89443420 + (CATA)n Simple_repeat Simple_repeat 3 50 0 8 832 267 206 137 0 chr11 32400524 32400597 -89443259 - B3 SINE B2 -133 83 1 8 832 1154 77 0 23 chr11 32401609 32401781 -89442075 - B2_Mm2 SINE B2 -26 169 2 8 832 460 281 9 17 chr11 32401781 32401892 -89441964 + RSINE1 SINE B4 50 159 -6 8 832 711 210 7 28 chr11 32402077 32402219 -89441637 + B1_Mur3 SINE Alu 1 139 -10 8 832 765 157 16 0 chr11 32402275 32402396 -89441460 + B1_Mus1 SINE Alu 19 141 -7 8 832 1176 74 0 0 chr11 32403485 32403633 -89440223 - B1_Mus1 SINE Alu 0 148 1 8 832 632 184 31 31 chr11 32403826 32403955 -89439901 + B1_Mur1 SINE Alu 10 138 -11 8 832 962 209 25 0 chr11 32403976 32404172 -89439684 + B3 SINE B2 16 216 0 8 832 369 146 211 11 chr11 32404266 32404356 -89439500 - PB1D9 SINE Alu -9 111 4 8 832 332 0 47 0 chr11 32404365 32404408 -89439448 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 8 832 247 203 186 0 chr11 32404418 32404477 -89439379 - B1_Mur4 SINE Alu -77 73 4 8 832 405 0 0 0 chr11 32404485 32404530 -89439326 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 8 832 240 268 92 11 chr11 32404551 32404638 -89439218 + RSINE1 SINE B4 28 121 -44 8 832 201 171 0 0 chr11 32404740 32404775 -89439081 + A-rich Low_complexity Low_complexity 1 35 0 8 832 230 325 62 0 chr11 32404797 32404877 -89438979 + B4A SINE B4 83 167 -125 8 832 474 248 0 10 chr11 32404807 32404909 -89438947 + PB1D10 SINE Alu 10 110 -7 8 832 1374 97 11 0 chr11 32405881 32406067 -89437789 + B2_Mm1t SINE B2 2 189 -4 8 832 670 158 362 12 chr11 32406442 32406602 -89437254 + B3 SINE B2 1 216 0 8 832 207 0 0 0 chr11 32406884 32406907 -89436949 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 832 247 294 154 9 chr11 32406912 32407022 -89436834 - RSINE1 SINE B4 -33 132 7 8 832 180 0 0 0 chr11 32407273 32407293 -89436563 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 832 445 310 47 0 chr11 32407299 32407428 -89436428 - ID_B1 SINE B4 -8 216 82 8 832 1307 96 11 0 chr11 32407467 32407645 -89436211 + B2_Mm1t SINE B2 1 180 -13 8 832 211 189 0 0 chr11 32407729 32407766 -89436090 + B3 SINE B2 64 100 -116 8 832 330 107 0 0 chr11 32407791 32407847 -89436009 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 8 832 833 45 0 9 chr11 32407849 32407961 -89435895 + B1_Mm SINE Alu 1 111 -36 8 832 228 286 47 12 chr11 32408473 32408558 -89435298 - Lx9 LINE L1 -1668 5976 5889 8 832 705 262 5 45 chr11 32408558 32408758 -89435098 - Lx9 LINE L1 -144 5703 5512 8 832 267 238 182 45 chr11 32408758 32408846 -89435010 - B4A SINE B4 -188 104 5 8 832 347 189 59 59 chr11 32408933 32409034 -89434822 - B1_Mm SINE Alu -7 140 40 8 832 373 225 188 14 chr11 32409589 32409733 -89434123 + Lx9 LINE L1 7226 7394 -250 8 832 2383 146 154 56 chr11 32409733 32410254 -89433602 - RMER1B Other Other 0 1066 495 8 832 286 252 45 9 chr11 32410271 32410383 -89433473 + Lx9 LINE L1 7380 7495 -149 8 832 436 216 219 0 chr11 32410906 32411055 -89432801 - B3 SINE B2 -6 210 29 8 832 1016 96 145 0 chr11 32411065 32411231 -89432625 - B2_Mm2 SINE B2 -5 190 1 8 832 978 162 66 5 chr11 32411928 32412126 -89431730 - B3 SINE B2 -5 211 2 8 832 1356 245 105 32 chr11 32412162 32412667 -89431189 - L1MC1 LINE L1 -64 6269 5728 8 832 592 262 14 14 chr11 32412729 32412872 -89430984 + B1F2 SINE Alu 2 144 -5 8 832 180 0 0 0 chr11 32412920 32412940 -89430916 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 832 284 189 19 0 chr11 32413224 32413277 -89430579 - B1F SINE Alu -1 148 95 8 832 566 276 108 7 chr11 32413317 32413373 -89430483 - L1MC1 LINE L1 -811 5335 5275 8 832 839 199 27 0 chr11 32413373 32413519 -89430337 - B1_Mur4 SINE Alu 0 150 1 8 832 566 276 108 7 chr11 32413519 32413768 -89430088 - L1MC1 LINE L1 -872 5274 5000 8 832 207 0 0 0 chr11 32413778 32413801 -89430055 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 8 832 624 220 45 0 chr11 32413818 32413950 -89429906 - RSINE1 SINE B4 -16 149 12 8 832 304 295 74 15 chr11 32413956 32414159 -89429697 - L1MC1 LINE L1 -1141 5005 4791 8 832 259 299 25 41 chr11 32414195 32414317 -89429539 - PB1D7 SINE Alu 0 120 1 8 832 243 237 217 38 chr11 32414358 32414542 -89429314 - L1MC1 LINE L1 -1698 4448 4232 8 832 819 116 97 17 chr11 32414542 32414717 -89429139 + URR1A DNA MER1_type 38 226 0 8 832 626 207 348 35 chr11 32414775 32414846 -89429010 - L1MC1 LINE L1 -2059 4087 4011 8 832 1239 54 0 0 chr11 32414846 32414993 -89428863 - B1_Mm SINE Alu 0 147 1 8 832 1017 101 154 6 chr11 32414993 32415161 -89428695 - B2_Mm2 SINE B2 -1 194 1 8 832 626 207 348 35 chr11 32415161 32415486 -89428370 - L1MC1 LINE L1 -2136 4010 3530 8 832 1115 46 0 0 chr11 32415486 32415617 -89428239 - B1_Mus1 SINE Alu -17 131 1 8 832 626 207 348 35 chr11 32415617 32415810 -89428046 - L1MC1 LINE L1 -2617 3529 3314 8 832 667 231 21 0 chr11 32417717 32417860 -89425996 + B1_Mur1 SINE Alu 2 147 -2 8 832 207 0 0 0 chr11 32418465 32418488 -89425368 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 832 312 236 208 0 chr11 32418949 32419055 -89424801 + B4A SINE B4 163 290 -2 8 832 381 267 68 8 chr11 32419131 32419263 -89424593 + B1_Mur1 SINE Alu 4 143 -6 8 832 1434 78 16 10 chr11 32420073 32420267 -89423589 + B2_Mm2 SINE B2 1 195 0 8 832 579 245 67 36 chr11 32420295 32420460 -89423396 + B3 SINE B2 39 208 -8 8 832 977 69 224 12 chr11 32420912 32421073 -89422783 + B2_Mm2 SINE B2 1 195 0 8 832 1938 88 67 3 chr11 32422013 32422310 -89421546 + RLTR33 LTR ERVK 1 316 -362 8 832 572 264 0 8 chr11 32422447 32422573 -89421283 + ID_B1 SINE B4 82 206 -18 8 832 30 0 0 0 chr11 32422573 32422603 -89421253 + AT_rich Low_complexity Low_complexity 1 30 0 8 832 262 183 167 0 chr11 32422622 32422682 -89421174 + B1_Mur4 SINE Alu 19 88 -62 9 832 243 0 0 0 chr11 32422703 32422730 -89421126 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 9 832 209 230 14 0 chr11 32422853 32422927 -89420929 + CT-rich Low_complexity Low_complexity 2 76 0 9 832 493 266 36 60 chr11 32424894 32425062 -89418794 + RSINE1 SINE B4 2 165 0 9 832 298 46 43 75 chr11 32425549 32425643 -89418213 + T-rich Low_complexity Low_complexity 4 94 0 9 832 1174 62 7 0 chr11 32425644 32425790 -89418066 - B1_Mus1 SINE Alu -1 147 1 9 832 328 317 0 46 chr11 32425972 32426081 -89417775 + PB1D7 SINE Alu 3 106 -14 9 832 365 205 12 24 chr11 32426079 32426152 -89417704 + B3 SINE B2 126 199 -17 9 832 182 37 0 36 chr11 32426152 32426180 -89417676 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 832 365 205 12 24 chr11 32426180 32426191 -89417665 + B3 SINE B2 200 209 -7 9 832 21 36 0 0 chr11 32427902 32427930 -89415926 + AT_rich Low_complexity Low_complexity 1 28 0 9 832 716 193 7 15 chr11 32427989 32428126 -89415730 - B1_Mur1 SINE Alu -13 136 1 9 832 1240 87 15 98 chr11 32428141 32428344 -89415512 - B2_Mm2 SINE B2 -8 187 2 9 832 584 169 39 123 chr11 32428757 32428912 -89414944 + B1_Mur3 SINE Alu 6 147 -2 9 832 1220 48 0 7 chr11 32428917 32429065 -89414791 + B1_Mm SINE Alu 1 147 0 9 832 234 0 0 0 chr11 32429065 32429091 -89414765 + (A)n Simple_repeat Simple_repeat 1 26 0 9 832 240 333 21 31 chr11 32429433 32429529 -89414327 + MER21B LTR ERV1 573 667 -196 9 832 225 235 262 69 chr11 32429719 32429879 -89413977 + L1M5 LINE L1 5705 5895 -284 9 832 272 261 14 0 chr11 32429886 32429955 -89413901 + ID4 SINE ID 12 81 -2 9 832 793 206 14 0 chr11 32430117 32430258 -89413598 - B1_Mur1 SINE Alu -3 146 4 9 832 710 220 84 6 chr11 32430281 32430459 -89413397 - B3 SINE B2 -21 195 4 9 832 1102 66 0 7 chr11 32430494 32430632 -89413224 - B1_Mm SINE Alu -9 138 2 9 832 381 238 44 71 chr11 32430860 32430973 -89412883 + RSINE1 SINE B4 56 165 0 9 832 499 113 140 9 chr11 32431081 32431188 -89412668 + B1_Mus2 SINE Alu 22 142 -5 9 832 1115 77 0 20 chr11 32431386 32431397 -89412459 - B1_Mus2 SINE Alu -4 143 135 9 832 225 0 0 0 chr11 32431397 32431422 -89412434 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 9 832 1115 77 0 20 chr11 32431422 32431556 -89412300 - B1_Mus2 SINE Alu -13 134 1 9 832 320 280 105 8 chr11 32431863 32432066 -89411790 - L1MB7 LINE L1 -115 6049 5814 9 832 29 0 0 0 chr11 32433270 32433299 -89410557 + GC_rich Low_complexity Low_complexity 1 29 0 9 832 224 230 216 0 chr11 32434222 32434296 -89409560 - PB1 SINE Alu -29 98 9 9 832 687 124 114 16 chr11 32434583 32434706 -89409150 + B1_Mus2 SINE Alu 1 135 -12 9 832 1264 82 39 0 chr11 32435568 32435750 -89408106 + B2_Mm2 SINE B2 2 190 -5 9 832 806 149 49 7 chr11 32436100 32436242 -89407614 - B1_Mur4 SINE Alu -1 149 2 9 832 1048 216 75 4 chr11 32436304 32436559 -89407297 - B4A SINE B4 -16 276 4 9 832 648 168 42 0 chr11 32436930 32437049 -89406807 - B1_Mus2 SINE Alu -19 128 5 9 832 180 0 0 0 chr11 32437435 32437455 -89406401 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 9 832 445 294 0 0 chr11 32437587 32437706 -89406150 - PB1 SINE Alu -8 119 1 9 832 24 32 0 0 chr11 32437706 32437737 -89406119 + AT_rich Low_complexity Low_complexity 1 31 0 9 832 691 122 35 1 chr11 32437754 32437871 -89405985 + B1_Mus1 SINE Alu 17 137 -13 9 832 189 0 0 0 chr11 32437871 32437892 -89405964 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 9 832 650 150 46 30 chr11 32437892 32437905 -89405951 + B1_Mur4 SINE Alu 138 149 -1 9 832 201 74 0 0 chr11 32438564 32438591 -89405265 + (TCC)n Simple_repeat Simple_repeat 1 27 0 9 832 687 309 119 19 chr11 32439292 32439711 -89404145 - RMER5 LTR ERV1 -15 519 59 9 832 349 285 110 26 chr11 32440108 32440299 -89403557 - MER2 DNA MER2_type -114 231 25 9 832 276 376 28 28 chr11 32440325 32440503 -89403353 + MIRb SINE MIR 13 190 -78 9 832 201 217 0 48 chr11 32440523 32440586 -89403270 + (GGGTG)n Simple_repeat Simple_repeat 1 60 0 9 832 568 260 137 40 chr11 32441338 32441565 -89402291 - MLT1A0 LTR MaLR -34 331 72 9 832 207 0 0 0 chr11 32441565 32441588 -89402268 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 832 1136 58 0 0 chr11 32441588 32441727 -89402129 - B1_Mus1 SINE Alu -9 139 1 9 832 568 260 137 40 chr11 32441727 32441798 -89402058 - MLT1A0 LTR MaLR -294 71 4 9 832 296 309 32 32 chr11 32442483 32442640 -89401216 - MIRc SINE MIR -98 170 14 9 832 212 0 36 0 chr11 32443423 32443451 -89400405 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 9 832 796 92 108 58 chr11 32443468 32443607 -89400249 - B1_Mur4 SINE Alu 0 150 5 9 832 1222 41 7 0 chr11 32443714 32443860 -89399996 - B1_Mus1 SINE Alu 0 148 2 9 832 721 253 31 0 chr11 32443923 32444085 -89399771 - B3A SINE B2 -27 171 5 9 832 252 59 0 0 chr11 32445134 32445168 -89398688 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 832 225 0 0 0 chr11 32445169 32445194 -89398662 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 832 523 191 35 9 chr11 32445337 32445453 -89398403 - B1_Mur2 SINE Alu -1 148 30 9 832 189 0 0 0 chr11 32445950 32445971 -89397885 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 832 21 36 0 0 chr11 32445978 32446006 -89397850 + AT_rich Low_complexity Low_complexity 1 28 0 9 832 970 125 0 14 chr11 32446063 32446209 -89397647 + B1_Mur4 SINE Alu 5 148 -2 9 832 201 74 0 0 chr11 32446209 32446236 -89397620 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 9 832 402 353 6 11 chr11 32446987 32447029 -89396827 + (CCCA)n Simple_repeat Simple_repeat 1 42 0 9 832 1408 186 116 9 chr11 32447029 32447158 -89396698 - ORR1D1 LTR MaLR 0 374 228 9 832 246 32 0 0 chr11 32447158 32447189 -89396667 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 9 832 1408 186 116 9 chr11 32447189 32447396 -89396460 - ORR1D1 LTR MaLR -147 227 3 9 832 402 353 6 11 chr11 32447396 32447528 -89396328 + (CCCA)n Simple_repeat Simple_repeat 3 133 0 9 832 290 319 58 1 chr11 32447894 32448030 -89395826 + MIRb SINE MIR 14 155 -121 9 832 465 179 0 0 chr11 32448567 32448690 -89395166 + CT-rich Low_complexity Low_complexity 1 123 0 9 832 622 124 14 14 chr11 32448714 32448853 -89395003 + (TCTG)n Simple_repeat Simple_repeat 2 140 0 9 832 519 130 0 0 chr11 32448904 32449004 -89394852 + (TC)n Simple_repeat Simple_repeat 1 100 0 9 832 689 143 23 23 chr11 32449004 32449133 -89394723 - B1_Mur4 SINE Alu -21 129 1 9 832 284 105 0 34 chr11 32449905 32449964 -89393892 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 9 832 261 252 113 0 chr11 32450398 32450513 -89393343 - MLT1K LTR MaLR -117 478 351 9 832 253 268 0 0 chr11 32450556 32450612 -89393244 + ID2 SINE ID 24 79 -4 9 832 450 272 148 0 chr11 32450635 32450797 -89393059 + B4A SINE B4 2 187 -105 9 832 321 275 12 36 chr11 32450932 32451015 -89392841 + ID4 SINE ID 2 82 -1 9 832 349 345 85 92 chr11 32451023 32451317 -89392539 - MLT1K LTR MaLR -232 363 72 9 832 189 259 0 69 chr11 32451472 32451530 -89392326 + MIRm SINE MIR 115 168 -108 9 832 204 67 0 0 chr11 32452038 32452068 -89391788 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 832 442 246 9 38 chr11 32452262 32452406 -89391450 - PB1 SINE Alu -7 141 4 9 832 725 184 0 28 chr11 32453317 32453462 -89390394 - B1_Mus1 SINE Alu -7 141 1 9 832 1204 175 9 39 chr11 32454079 32454311 -89389545 + URR1B DNA MER1_type 1 225 0 9 832 261 0 0 0 chr11 32454879 32454908 -89388948 + (T)n Simple_repeat Simple_repeat 1 29 0 9 832 241 310 38 48 chr11 32455761 32455788 -89388068 - BC1_Mm scRNA scRNA -41 111 88 9 832 1353 56 0 0 chr11 32455788 32455967 -89387889 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 832 285 283 56 6 chr11 32455967 32456044 -89387812 - ID4_ SINE ID -65 87 8 9 832 232 296 47 47 chr11 32456891 32456976 -89386880 - MLT1A LTR MaLR -288 86 1 9 832 212 301 26 64 chr11 32457052 32457130 -89386726 + RSINE1 SINE B4 74 148 -17 9 832 210 37 0 0 chr11 32457134 32457161 -89386695 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 832 223 273 20 20 chr11 32457600 32457701 -89386155 + CT-rich Low_complexity Low_complexity 3 103 0 9 832 867 296 54 11 chr11 32457749 32458029 -89385827 - RMER5 LTR ERV1 -210 324 33 9 832 256 270 78 20 chr11 32458211 32458313 -89385543 + MER5A DNA MER1_type 77 184 -5 9 832 1137 45 0 0 chr11 32458389 32458521 -89385335 + B1_Mus2 SINE Alu 1 132 -15 9 832 312 27 0 0 chr11 32458522 32458559 -89385297 + (GA)n Simple_repeat Simple_repeat 1 37 0 9 832 234 237 34 0 chr11 32458654 32458713 -89385143 - L2c LINE L2 -237 3150 3090 9 832 1046 130 7 0 chr11 32459371 32459517 -89384339 - B1_Mur4 SINE Alu -1 149 3 9 832 1405 69 5 26 chr11 32459553 32459746 -89384110 + B2_Mm1a SINE B2 2 190 -3 9 832 1080 130 198 0 chr11 32459751 32459928 -89383928 - B3 SINE B2 -4 212 1 9 832 182 69 0 0 chr11 32460717 32460746 -89383110 - L2c LINE L2 -366 3053 3025 9 832 180 322 0 0 chr11 32460812 32460871 -89382985 - L2b LINE L2 -34 3341 3283 9 832 450 306 165 41 chr11 32460932 32461061 -89382795 - B4A SINE B4 -16 276 140 9 832 279 114 0 0 chr11 32461061 32461105 -89382751 + (CACG)n Simple_repeat Simple_repeat 4 47 0 9 832 450 306 165 41 chr11 32461105 32461217 -89382639 - B4A SINE B4 -153 139 5 9 832 645 133 9 54 chr11 32461291 32461402 -89382454 + PB1D9 SINE Alu 5 110 -10 9 832 378 0 0 0 chr11 32462398 32462440 -89381416 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 9 832 283 194 17 65 chr11 32463101 32463212 -89380644 - B1_Mur4 SINE Alu 0 150 53 9 832 227 258 15 29 chr11 32463406 32463474 -89380382 + MLT1A1 LTR MaLR 1 67 -341 9 832 204 40 0 0 chr11 32464716 32464741 -89379115 + (CAGC)n Simple_repeat Simple_repeat 3 27 0 9 832 610 317 70 4 chr11 32465755 32465996 -89377860 + MER2 DNA MER2_type 89 345 0 1 832 203 315 98 0 chr11 32466071 32466163 -89377693 - MIR3 SINE MIR -4 204 104 1 832 1110 201 33 79 chr11 32467789 32468092 -89375764 - B4A SINE B4 -2 290 2 1 832 200 140 0 74 chr11 32468099 32468153 -89375703 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1 832 662 348 75 28 chr11 32468171 32468677 -89375179 - L1MB1 LINE L1 -24 6144 5615 1 832 288 175 43 0 chr11 32468686 32468759 -89375097 - PB1D10 SINE Alu -18 102 25 1 832 225 323 0 0 chr11 32468766 32468831 -89375025 - L1MB1 LINE L1 -583 5585 5521 1 832 315 321 146 77 chr11 32468908 32469764 -89374092 - L1MB1 LINE L1 -777 5363 4449 1 832 235 358 54 0 chr11 32470133 32470281 -89373575 - L1MB1 LINE L1 -2203 3940 3785 1 832 225 281 88 59 chr11 32470322 32470424 -89373432 - MER2 DNA MER2_type -126 219 115 1 832 1133 165 21 0 chr11 32470431 32470619 -89373237 + B2_Mm2 SINE B2 1 192 -3 1 832 853 141 22 0 chr11 32470624 32470759 -89373097 + B1_Mur3 SINE Alu 5 142 -7 1 832 294 106 0 0 chr11 32470759 32470806 -89373050 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 832 455 48 0 16 chr11 32470807 32470870 -89372986 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 1 832 213 122 245 0 chr11 32471570 32471619 -89372237 - MIRc SINE MIR -121 147 87 1 832 814 218 28 280 chr11 32471868 32472371 -89371485 - MTE2a LTR MaLR -2 377 2 1 832 859 179 0 0 chr11 32472402 32472542 -89371314 + B1_Mur1 SINE Alu 1 140 -9 1 832 1097 158 126 15 chr11 32473419 32473618 -89370238 + URR1B DNA MER1_type 5 225 0 1 832 312 70 0 0 chr11 32473989 32474032 -89369824 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 1 832 247 274 87 19 chr11 32474032 32474136 -89369720 + MIRm SINE MIR 18 128 -148 1 832 2043 134 29 11 chr11 32474653 32475001 -89368855 + ORR1B1 LTR MaLR 41 394 0 1 832 443 214 8 74 chr11 32475148 32475269 -89368587 - MLT1A1 LTR MaLR 0 408 296 1 832 263 330 11 0 chr11 32475552 32475646 -89368210 - MLT1A1 LTR MaLR 0 408 314 1 832 433 172 41 0 chr11 32475768 32475890 -89367966 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 1 832 854 137 45 8 chr11 32475891 32476023 -89367833 - B1F2 SINE Alu -10 139 3 1 832 416 223 21 11 chr11 32476360 32476455 -89367401 - ID_B1 SINE B4 -36 188 93 1 832 291 353 29 29 chr11 32477064 32477201 -89366655 + MLT1A LTR MaLR 19 155 -219 1 832 183 323 135 0 chr11 32477390 32477486 -89366370 + MIRc SINE MIR 88 196 -72 1 832 184 278 125 0 chr11 32477521 32477593 -89366263 + L3 LINE CR1 704 784 -3705 1 832 1522 79 0 5 chr11 32478231 32478422 -89365434 - B2_Mm2 SINE B2 -5 190 1 1 832 201 300 24 48 chr11 32479053 32479137 -89364719 - MIRb SINE MIR -142 126 45 1 832 226 206 62 30 chr11 32479257 32479343 -89364513 + MIRm SINE MIR 2 98 -170 1 832 610 112 32 11 chr11 32480207 32480244 -89363612 - B1_Mus1 SINE Alu -2 118 78 1 832 387 0 0 0 chr11 32480244 32480287 -89363569 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 832 610 77 0 0 chr11 32480287 32480362 -89363494 - B1_Mus1 SINE Alu -71 77 3 1 832 393 130 87 0 chr11 32480362 32480431 -89363425 - MTD LTR MaLR -340 79 5 1 832 184 256 0 0 chr11 32481118 32481157 -89362699 - MIR SINE MIR -76 132 94 1 832 364 183 18 18 chr11 32481729 32481817 -89362039 + B1_Mur1 SINE Alu 10 126 -23 1 832 22 56 0 0 chr11 32482056 32482092 -89361764 + AT_rich Low_complexity Low_complexity 1 36 0 1 832 1082 121 0 0 chr11 32482212 32482369 -89361487 + B2_Mm2 SINE B2 2 158 -37 1 832 288 0 0 0 chr11 32482370 32482402 -89361454 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 832 366 23 0 0 chr11 32482940 32482983 -89360873 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 832 234 0 0 0 chr11 32483028 32483054 -89360802 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 832 526 242 8 15 chr11 32483536 32483666 -89360190 + RSINE1 SINE B4 33 161 -4 1 832 632 263 64 29 chr11 32483699 32483903 -89359953 + B3 SINE B2 6 216 0 1 832 623 286 93 4 chr11 32483921 32484146 -89359710 - MER44A DNA MER2_type 0 339 95 1 832 190 292 13 53 chr11 32485495 32485571 -89358285 - MIRc SINE MIR -69 199 127 1 832 645 270 0 20 chr11 32485875 32486026 -89357830 + RSINE1 SINE B4 3 150 -15 1 832 464 254 45 30 chr11 32486245 32486379 -89357477 - MTD LTR MaLR -282 137 2 1 832 1178 34 0 64 chr11 32486517 32486673 -89357183 - B1_Mus1 SINE Alu -1 147 2 1 832 1416 86 16 0 chr11 32486814 32487000 -89356856 + B2_Mm2 SINE B2 1 189 -6 1 832 189 0 0 0 chr11 32487150 32487171 -89356685 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 832 330 223 85 113 chr11 32487964 32488292 -89355564 + L1M3e LINE L1 1087 1405 -5625 1 832 599 182 18 144 chr11 32489602 32489769 -89354087 + B1F1 SINE Alu 4 149 0 1 832 192 191 92 31 chr11 32490207 32490272 -89353584 - MIRc SINE MIR -129 139 71 1 832 258 105 0 0 chr11 32490631 32490669 -89353187 + (CCCCCA)n Simple_repeat Simple_repeat 6 43 0 1 832 333 270 46 31 chr11 32491154 32491284 -89352572 - MTEb LTR MaLR -2 377 246 1 832 929 251 80 0 chr11 32491557 32491756 -89352100 + B3 SINE B2 2 216 0 1 832 184 215 12 37 chr11 32492759 32492841 -89351015 + (ATGGTG)n Simple_repeat Simple_repeat 1 80 0 1 832 313 283 107 19 chr11 32492857 32492990 -89350866 - MIR SINE MIR -89 179 35 1 832 387 56 0 0 chr11 32493686 32493740 -89350116 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 832 1191 56 0 7 chr11 32493742 32493887 -89349969 - B1_Mus1 SINE Alu -4 144 1 1 832 248 304 14 14 chr11 32493898 32493968 -89349888 - ID4_ SINE ID -2 81 12 1 832 442 262 142 47 chr11 32494006 32494154 -89349702 - RSINE1 SINE B4 -2 163 2 1 832 875 239 29 14 chr11 32494235 32494443 -89349413 - B3 SINE B2 -5 211 1 1 832 267 31 0 0 chr11 32494795 32494827 -89349029 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 832 856 204 109 43 chr11 32495155 32495365 -89348491 + ID_B1 SINE B4 1 224 0 1 832 1022 244 15 205 chr11 32495607 32496066 -89347790 - ORR1D1 LTR MaLR -2 372 1 1 832 242 291 0 0 chr11 32496074 32496129 -89347727 - ORR1D1-int LTR MaLR -4 1366 1312 1 832 237 114 22 22 chr11 32496131 32496176 -89347680 - MT2A LTR ERVL 0 533 489 1 832 283 276 171 11 chr11 32496249 32496320 -89347536 - MIRc SINE MIR -39 229 149 1 832 234 0 0 0 chr11 32496320 32496346 -89347510 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 1 832 283 276 171 11 chr11 32496346 32496450 -89347406 - MIRc SINE MIR -120 148 27 1 832 759 182 14 68 chr11 32497077 32497224 -89346632 - B1_Mur1 SINE Alu -10 139 1 1 832 25 24 0 23 chr11 32497227 32497256 -89346600 + AT_rich Low_complexity Low_complexity 1 29 0 1 832 1470 55 22 5 chr11 32497256 32497440 -89346416 + B2_Mm2 SINE B2 2 188 -7 1 832 25 24 0 23 chr11 32497440 32497453 -89346403 + AT_rich Low_complexity Low_complexity 1 13 0 1 832 653 55 11 0 chr11 32497748 32497839 -89346017 - B1_Mus2 SINE Alu 0 147 56 1 832 1051 218 14 9 chr11 32497915 32498133 -89345723 + ID_B1 SINE B4 6 224 0 1 832 229 353 9 38 chr11 32499088 32499194 -89344662 - RLTR22_Mur LTR ERVK -444 1404 1302 1 832 394 235 12 12 chr11 32500039 32500121 -89343735 + ID4_ SINE ID 2 83 0 1 832 201 184 26 0 chr11 32501037 32501075 -89342781 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 832 310 280 0 0 chr11 32501163 32501238 -89342618 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 3 832 465 198 0 0 chr11 32501281 32501382 -89342474 + (TCCA)n Simple_repeat Simple_repeat 4 104 0 3 832 188 163 0 23 chr11 32501433 32501477 -89342379 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 3 832 306 87 0 0 chr11 32502020 32502066 -89341790 + (GGCTG)n Simple_repeat Simple_repeat 4 49 0 4 832 556 24 37 0 chr11 32502544 32502626 -89341230 + L1Md_F3 LINE L1 6500 6584 0 5 832 1285 84 73 0 chr11 32502630 32502809 -89341047 + B2_Mm1a SINE B2 2 193 0 6 832 25 0 0 0 chr11 32502809 32502834 -89341022 + AT_rich Low_complexity Low_complexity 1 25 0 7 832 1024 55 16 0 chr11 32502837 32502965 -89340891 + B1_Mus2 SINE Alu 1 130 -17 8 832 203 0 0 36 chr11 32502971 32502999 -89340857 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 832 1231 68 0 0 chr11 32503039 32503187 -89340669 + B1_Mus1 SINE Alu 1 148 0 1 832 335 250 92 20 chr11 32503973 32504071 -89339785 - MIRc SINE MIR -129 139 35 1 832 1332 210 64 17 chr11 32504333 32504629 -89339227 - MTD LTR MaLR -109 310 1 1 832 226 235 43 86 chr11 32505592 32505685 -89338171 + MER20 DNA MER1_type 3 91 -128 1 12 1074 110 26 47 chr11 32505777 32505968 -89337888 + B2_Mm2 SINE B2 9 195 0 1 833 328 222 84 45 chr11 32506071 32506250 -89337606 - L1MC LINE L1 -761 5385 5200 1 833 186 143 0 0 chr11 32506264 32506299 -89337557 + (T)n Simple_repeat Simple_repeat 1 35 0 1 833 386 57 0 0 chr11 32506304 32506357 -89337499 - B1_Mur4 SINE Alu 0 150 98 1 833 315 0 0 0 chr11 32506831 32506866 -89336990 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 833 1114 70 0 27 chr11 32506866 32507008 -89336848 - B1_Mus2 SINE Alu -4 143 6 1 833 301 276 121 58 chr11 32507015 32507121 -89336735 - L1MD LINE L1 -1677 4469 4369 2 833 1126 215 5 36 chr11 32507121 32507343 -89336513 + B3 SINE B2 2 216 0 2 833 301 276 121 58 chr11 32507343 32507459 -89336397 - L1MD LINE L1 -1778 4368 4233 2 833 233 250 276 7 chr11 32507466 32507611 -89336245 - L1MEf LINE L1 -1893 4253 4070 2 833 932 136 7 20 chr11 32507678 32507828 -89336028 - B1_Mur4 SINE Alu 0 150 3 2 833 402 226 41 41 chr11 32507838 32507935 -89335921 - B1_Mur1 SINE Alu 0 149 53 2 833 1127 82 0 0 chr11 32507959 32508106 -89335750 + B1_Mus2 SINE Alu 1 147 0 2 833 183 42 0 0 chr11 32508174 32508198 -89335658 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 833 570 140 202 0 chr11 32508202 32508316 -89335540 - B1_Mur4 SINE Alu -13 137 1 2 833 329 249 48 52 chr11 32508589 32508759 -89335097 - B4 SINE B4 0 292 86 2 833 339 25 0 0 chr11 32508759 32508799 -89335057 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2 833 540 30 0 0 chr11 32508799 32508864 -89334992 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 833 375 118 38 3 chr11 32508894 32508956 -89334900 - B2_Mm2 SINE B2 -107 109 47 3 833 1213 106 6 0 chr11 32508988 32509158 -89334698 - B2_Mm2 SINE B2 -22 173 3 3 833 414 0 0 0 chr11 32509159 32509205 -89334651 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 3 833 527 240 23 15 chr11 32509206 32509337 -89334519 - B1_Mur2 SINE Alu -15 134 3 3 833 649 82 0 0 chr11 32509386 32509471 -89334385 - B2_Mm2 SINE B2 -110 85 1 3 833 444 259 0 0 chr11 32509515 32509600 -89334256 + B3A SINE B2 1 85 -113 3 833 416 235 196 47 chr11 32509859 32510203 -89333653 - L1MEf LINE L1 -3906 2240 1846 2 833 412 234 47 18 chr11 32511101 32511271 -89332585 + (CA)n Simple_repeat Simple_repeat 2 176 0 3 833 325 213 57 34 chr11 32511307 32511482 -89332374 + (CATA)n Simple_repeat Simple_repeat 1 179 0 3 833 280 332 107 0 chr11 32512120 32512307 -89331549 + L1MA6 LINE L1 6052 6258 -42 3 833 883 217 60 15 chr11 32512346 32512547 -89331309 + B3 SINE B2 1 210 -6 4 833 246 281 0 0 chr11 32513126 32513183 -89330673 - MLT1A0 LTR MaLR -91 274 218 4 833 482 364 72 0 chr11 32513969 32514164 -89329692 - Tigger5 DNA MER2_type -2191 215 7 4 833 575 286 0 0 chr11 32514198 32514324 -89329532 + RSINE1 SINE B4 11 136 -29 4 833 477 0 0 0 chr11 32514721 32514774 -89329082 + (CGTG)n Simple_repeat Simple_repeat 2 54 0 4 833 44 0 0 0 chr11 32515059 32515103 -89328753 + AT_rich Low_complexity Low_complexity 1 44 0 4 833 827 19 0 45 chr11 32515108 32515219 -89328637 - B1_Mus2 SINE Alu 0 147 42 4 833 309 172 139 20 chr11 32515152 32515253 -89328603 - RLTR25B LTR ERVK -519 509 397 4 833 423 246 0 0 chr11 32515255 32515434 -89328422 + CT-rich Low_complexity Low_complexity 2 180 0 4 833 407 75 0 0 chr11 32515448 32515501 -89328355 - B1_Mus1 SINE Alu -93 55 3 4 833 326 151 31 28 chr11 32515501 32515517 -89328339 - ID_B1 SINE B4 -79 121 70 5 833 200 35 35 0 chr11 32515699 32515728 -89328128 + (CCCCCA)n Simple_repeat Simple_repeat 5 34 0 5 833 253 352 21 6 chr11 32516979 32517096 -89326760 + AluG_3 SINE Alu 1 226 -85 5 833 436 214 158 41 chr11 32517097 32517243 -89326613 - RSINE1 SINE B4 0 165 3 5 833 344 281 101 76 chr11 32517286 32517444 -89326412 + RSINE1 SINE B4 3 164 -1 5 833 1576 21 0 85 chr11 32517573 32517784 -89326072 + B2_Mm1t SINE B2 1 193 0 5 833 271 225 24 36 chr11 32518320 32518403 -89325453 + ID4 SINE ID 2 83 0 5 833 314 237 144 63 chr11 32518406 32518572 -89325284 - MLT1E2 LTR MaLR -33 647 443 5 833 496 306 44 0 chr11 32518567 32518727 -89325129 + MTEb LTR MaLR 213 379 0 5 833 1089 62 62 0 chr11 32518815 32518959 -89324897 - B2_Mm2 SINE B2 -41 154 2 5 833 252 0 0 0 chr11 32518983 32519011 -89324845 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 833 823 161 8 0 chr11 32519011 32519141 -89324715 - B1_Mus2 SINE Alu -12 135 5 6 833 213 39 0 0 chr11 32519766 32519792 -89324064 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 833 1096 143 6 0 chr11 32519925 32520100 -89323756 + B2_Mm2 SINE B2 1 176 -19 6 833 274 310 89 30 chr11 32520265 32520468 -89323388 + Lx9 LINE L1 7278 7492 -152 6 833 187 241 56 0 chr11 32521231 32521285 -89322571 + MIR SINE MIR 64 120 -142 6 833 703 194 65 29 chr11 32521670 32521808 -89322048 - B1_Mus1 SINE Alu 0 148 6 6 833 231 36 0 0 chr11 32522900 32522928 -89320928 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 833 486 0 0 0 chr11 32523146 32523200 -89320656 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 833 190 123 133 50 chr11 32523892 32523952 -89319904 + L3 LINE CR1 4285 4349 -140 6 833 443 322 61 95 chr11 32525151 32525455 -89318401 + Charlie4a DNA MER1_type 6 301 -207 7 833 1211 81 0 0 chr11 32525455 32525603 -89318253 + B1_Mus1 SINE Alu 1 148 0 7 833 443 322 61 95 chr11 32525603 32525803 -89318053 + Charlie4a DNA MER1_type 302 493 -15 7 833 495 226 28 38 chr11 32526687 32526793 -89317063 + B3A SINE B2 88 192 -6 7 833 885 139 42 0 chr11 32526808 32526952 -89316904 + B1_Mur4 SINE Alu 1 150 0 7 833 486 0 0 0 chr11 32526983 32527037 -89316819 + (GGGAA)n Simple_repeat Simple_repeat 2 55 0 7 833 856 106 14 7 chr11 32527039 32527182 -89316674 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 7 833 246 321 0 19 chr11 32527516 32527624 -89316232 + G-rich Low_complexity Low_complexity 1 106 0 7 833 297 0 0 0 chr11 32529210 32529243 -89314613 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 833 186 43 0 0 chr11 32529253 32529276 -89314580 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 833 1568 62 0 0 chr11 32529351 32529543 -89314313 - B2_Mm1a SINE B2 0 193 2 7 833 592 327 24 0 chr11 32529573 32529778 -89314078 + L1MA7 LINE L1 5621 5830 -461 8 833 469 219 21 10 chr11 32530029 32530120 -89313736 + RMER5 LTR ERV1 426 517 -17 8 833 404 258 14 77 chr11 32530120 32530263 -89313593 + BC1_Mm scRNA scRNA 1 134 -18 8 833 365 222 10 0 chr11 32530279 32530378 -89313478 + GA-rich Low_complexity Low_complexity 3 102 0 8 833 1186 68 67 6 chr11 32530404 32530548 -89313308 + B2_Mm2 SINE B2 3 157 -38 8 833 243 0 0 0 chr11 32530548 32530575 -89313281 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 833 1186 68 67 6 chr11 32530575 32530594 -89313262 + B2_Mm2 SINE B2 158 176 -19 8 833 833 197 0 0 chr11 32530594 32530726 -89313130 - B1_Mur3 SINE Alu -13 136 5 8 833 1192 68 0 0 chr11 32530758 32530905 -89312951 + B1_Mus1 SINE Alu 1 147 -1 8 833 21 0 0 0 chr11 32530905 32530926 -89312930 + AT_rich Low_complexity Low_complexity 1 21 0 8 833 931 305 33 14 chr11 32531084 32531450 -89312406 - L1_Mur3 LINE L1 -1800 4080 3708 8 833 690 238 36 12 chr11 32531459 32531625 -89312231 - B3 SINE B2 -2 214 45 9 833 210 71 0 0 chr11 32531742 32531770 -89312086 + (T)n Simple_repeat Simple_repeat 1 28 0 9 833 892 71 159 0 chr11 32531771 32531897 -89311959 - B1_Mm SINE Alu 0 147 2 9 833 221 171 0 0 chr11 32532023 32532064 -89311792 + A-rich Low_complexity Low_complexity 1 41 0 9 833 418 223 138 0 chr11 32532182 32532276 -89311580 - B4A SINE B4 -182 110 4 9 833 415 267 0 0 chr11 32532536 32532622 -89311234 - MTD LTR MaLR -306 113 28 9 833 355 231 7 7 chr11 32532622 32532757 -89311099 + (TG)n Simple_repeat Simple_repeat 1 135 0 9 833 827 239 12 0 chr11 32532759 32532922 -89310934 - RSINE1 SINE B4 0 165 1 9 833 1164 72 0 0 chr11 32533444 32533583 -89310273 + B1_Mus1 SINE Alu 1 139 -9 9 833 764 165 181 6 chr11 32533633 32533810 -89310046 + B3 SINE B2 1 208 -8 9 833 1271 109 11 0 chr11 32533910 32534094 -89309762 + B2_Mm2 SINE B2 1 186 -9 1 833 261 0 0 0 chr11 32535096 32535125 -89308731 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 833 446 243 87 0 chr11 32535126 32535229 -89308627 - B1_Mm SINE Alu -30 117 6 1 833 217 68 22 22 chr11 32535429 32535474 -89308382 + (TTTTTA)n Simple_repeat Simple_repeat 2 46 0 1 833 1213 68 0 0 chr11 32535476 32535624 -89308232 - B1_Mus1 SINE Alu 0 148 1 1 833 1409 59 37 11 chr11 32535652 32535828 -89308028 + B2_Mm2 SINE B2 1 182 -13 1 833 1051 99 35 0 chr11 32535828 32535969 -89307887 + B1_Mus2 SINE Alu 2 147 0 1 833 1409 59 37 11 chr11 32535969 32535981 -89307875 + B2_Mm2 SINE B2 183 194 -1 1 833 246 285 270 6 chr11 32535997 32536156 -89307700 - Charlie2b DNA MER1_type -659 2123 1923 1 833 279 0 0 0 chr11 32536418 32536449 -89307407 + (T)n Simple_repeat Simple_repeat 1 31 0 1 833 25 31 0 0 chr11 32536706 32536738 -89307118 + AT_rich Low_complexity Low_complexity 1 32 0 1 833 597 158 307 12 chr11 32536860 32537026 -89306830 - B3 SINE B2 0 216 2 1 833 270 295 77 33 chr11 32537157 32537248 -89306608 - Charlie2b DNA MER1_type -876 1906 1812 1 833 1048 56 25 117 chr11 32537292 32537455 -89306401 - B1_Mus1 SINE Alu 0 148 1 1 833 379 234 68 11 chr11 32537457 32537562 -89306294 - PB1D10 SINE Alu -7 110 7 1 833 239 264 112 120 chr11 32537480 32537605 -89306251 - ID_B1 SINE B4 -45 179 56 1 833 271 278 109 18 chr11 32537779 32537889 -89305967 - MLT1F1 LTR MaLR -6 563 435 1 833 286 307 47 99 chr11 32538041 32538254 -89305602 - RLTR41 LTR ERV1 -84 362 161 1 833 583 205 171 0 chr11 32539542 32539659 -89304197 - B1_Mur4 SINE Alu -13 137 1 1 833 1127 75 0 7 chr11 32539875 32540022 -89303834 - B1_Mus1 SINE Alu -1 147 2 1 833 728 222 93 16 chr11 32540029 32540212 -89303644 - B3A SINE B2 0 198 2 1 833 841 182 0 33 chr11 32540334 32540487 -89303369 - B1_Mur3 SINE Alu 0 149 2 1 833 474 316 129 32 chr11 32540613 32540926 -89302930 + MLT1H2 LTR MaLR 12 579 0 1 833 249 297 140 35 chr11 32540927 32541070 -89302786 - MIR3 SINE MIR -43 165 8 1 833 1515 246 163 40 chr11 32541223 32541770 -89302086 + MER90a LTR ERV1 1 614 0 1 833 262 284 161 17 chr11 32541842 32541960 -89301896 + L2a LINE L2 3279 3413 -13 1 833 941 53 105 8 chr11 32541965 32542098 -89301758 + B1_Mm SINE Alu 2 147 0 1 833 189 154 0 0 chr11 32542799 32542838 -89301018 + (CCG)n Simple_repeat Simple_repeat 2 40 0 1 833 21 0 0 0 chr11 32542869 32542890 -89300966 + GC_rich Low_complexity Low_complexity 1 21 0 1 833 27 100 0 0 chr11 32542965 32543055 -89300801 + GC_rich Low_complexity Low_complexity 1 90 0 1 833 252 0 0 0 chr11 32543368 32543396 -89300460 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 1 833 243 0 0 0 chr11 32544565 32544592 -89299264 + (T)n Simple_repeat Simple_repeat 1 27 0 1 833 1233 48 0 0 chr11 32544595 32544742 -89299114 - B1_Mus1 SINE Alu 0 148 2 1 833 4782 46 2 0 chr11 32544771 32545338 -89298518 + L1_Mus1 LINE L1 6000 6567 0 1 833 357 324 41 34 chr11 32545368 32545515 -89298341 - RSINE1 SINE B4 -16 149 2 1 833 938 149 41 34 chr11 32545922 32546068 -89297788 + B1_Mur3 SINE Alu 2 148 -1 1 833 230 302 40 96 chr11 32546135 32546333 -89297523 + Charlie4a DNA MER1_type 267 453 -55 1 833 578 264 33 0 chr11 32546681 32546802 -89297054 - ID_B1 SINE B4 -16 208 84 1 833 219 286 0 31 chr11 32547216 32547281 -89296575 + RSINE1 SINE B4 56 118 -47 1 833 232 318 56 68 chr11 32548417 32548579 -89295277 + L2c LINE L2 3227 3386 -1 1 833 1080 84 126 0 chr11 32548626 32548649 -89295207 - B2_Mm2 SINE B2 -1 194 166 1 833 369 43 0 0 chr11 32548649 32548696 -89295160 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 833 1080 84 126 0 chr11 32548696 32548839 -89295017 - B2_Mm2 SINE B2 -30 165 8 1 833 726 155 0 72 chr11 32549058 32549197 -89294659 - B1_Mur3 SINE Alu 0 149 21 1 833 333 261 77 115 chr11 32549089 32549245 -89294611 - MT2B LTR ERVL -323 278 129 1 833 255 269 172 19 chr11 32549486 32549658 -89294198 + MIR SINE MIR 16 223 -45 1 833 354 185 0 0 chr11 32549748 32549802 -89294054 - B1F1 SINE Alu -95 54 1 1 833 235 320 13 0 chr11 32549831 32549909 -89293947 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 833 435 222 22 11 chr11 32549909 32550000 -89293856 - B1F1 SINE Alu -48 101 10 1 833 803 227 92 5 chr11 32551282 32551477 -89292379 - ID_B1 SINE B4 -10 214 3 1 833 630 39 0 0 chr11 32551532 32551609 -89292247 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 1 833 602 198 0 19 chr11 32552990 32553098 -89290758 + PB1D7 SINE Alu 14 119 -1 1 833 223 198 153 29 chr11 32553541 32553628 -89290228 - MIRb SINE MIR -121 141 56 1 833 245 245 0 0 chr11 32553703 32553752 -89290104 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 833 607 248 130 73 chr11 32553781 32553949 -89289907 - B4A SINE B4 -14 278 103 1 833 225 0 0 0 chr11 32553949 32553974 -89289882 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 833 607 248 130 73 chr11 32553974 32554066 -89289790 - B4A SINE B4 -190 102 3 1 833 2569 159 27 5 chr11 32554121 32554531 -89289325 - MTC LTR MaLR -2 419 1 1 833 291 372 127 9 chr11 32554989 32555217 -89288639 - MIR SINE MIR 0 262 8 1 833 233 292 82 36 chr11 32555305 32555415 -89288441 + B1F SINE Alu 1 115 -34 1 833 233 382 119 18 chr11 32555365 32555533 -89288323 - MamRep605 Unknown Unknown -159 717 533 1 833 1040 233 14 18 chr11 32555533 32555756 -89288100 - ID_B1 SINE B4 -1 223 2 1 833 1221 174 0 48 chr11 32555900 32556129 -89287727 + URR1A DNA MER1_type 9 226 0 1 833 385 284 39 0 chr11 32556329 32556431 -89287425 - PB1D10 SINE Alu -1 116 11 1 833 235 281 43 43 chr11 32556354 32556447 -89287409 - ID_B1 SINE B4 -53 171 79 1 833 380 260 60 82 chr11 32556569 32556703 -89287153 - B4A SINE B4 0 292 162 1 833 212 241 17 0 chr11 32556767 32556825 -89287031 + C-rich Low_complexity Low_complexity 1 59 0 1 833 1099 55 0 64 chr11 32557156 32557313 -89286543 + B1_Mm SINE Alu 1 147 0 1 833 1203 54 0 0 chr11 32557972 32558119 -89285737 - B1_Mm SINE Alu 0 147 1 1 833 488 324 110 16 chr11 32558185 32558430 -89285426 - MamRep137 DNA TcMar? -77 367 100 1 833 719 249 78 17 chr11 32558495 32558675 -89285181 - B3 SINE B2 -25 191 1 1 833 1176 74 0 0 chr11 32558889 32559037 -89284819 + B1_Mus1 SINE Alu 1 148 0 1 833 1430 64 32 11 chr11 32559065 32559254 -89284602 + B2_Mm1t SINE B2 1 193 0 1 833 216 260 0 0 chr11 32559699 32559749 -89284107 + CT-rich Low_complexity Low_complexity 4 53 0 1 833 534 265 75 5 chr11 32560392 32560578 -89283278 - L1MC4 LINE L1 -975 7067 6869 1 833 219 36 0 0 chr11 32560837 32560865 -89282991 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1 833 1282 34 0 0 chr11 32560891 32561038 -89282818 - B1_Mm SINE Alu 0 147 1 1 833 903 50 0 0 chr11 32561112 32561231 -89282625 + B1_Mus2 SINE Alu 29 147 0 1 833 245 259 148 0 chr11 32561259 32561340 -89282516 - B4A SINE B4 -196 96 4 1 833 1058 226 0 24 chr11 32561515 32561728 -89282128 - B3 SINE B2 -8 208 1 1 833 330 310 0 42 chr11 32561777 32561895 -89281961 - PB1D10 SINE Alu -3 114 2 1 833 206 302 104 0 chr11 32562376 32562482 -89281374 - L2 LINE L2 -605 2814 2698 1 833 242 261 43 0 chr11 32562607 32562676 -89281180 - RSINE1 SINE B4 -4 161 90 1 833 334 250 23 0 chr11 32562866 32562954 -89280902 + BC1_Mm scRNA scRNA 1 90 -62 1 833 189 0 0 0 chr11 32563147 32563168 -89280688 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1 833 1696 31 0 0 chr11 32563174 32563367 -89280489 - B2_Mm1a SINE B2 0 193 1 1 833 1045 75 0 7 chr11 32563371 32563519 -89280337 - B1_Mm SINE Alu 0 147 1 1 833 577 304 58 66 chr11 32563849 32564178 -89279678 - L1ME1 LINE L1 0 6162 5847 1 833 358 287 10 104 chr11 32564215 32564417 -89279439 - B3A SINE B2 -15 183 1 1 833 409 227 12 175 chr11 32564767 32564887 -89278969 - MER21B LTR ERV1 -294 569 472 1 833 625 195 273 6 chr11 32564887 32565052 -89278804 - B3 SINE B2 -6 210 2 1 833 409 227 12 175 chr11 32565052 32565102 -89278754 - MER21B LTR ERV1 -392 471 427 1 833 364 134 244 0 chr11 32565593 32565675 -89278181 + PB1D9 SINE Alu 19 120 0 1 833 652 134 28 258 chr11 32566160 32566370 -89277486 - B2_Mm2 SINE B2 -1 194 42 1 833 1211 55 0 0 chr11 32566370 32566516 -89277340 - B1_Mus2 SINE Alu 0 147 2 1 833 652 134 28 258 chr11 32566516 32566557 -89277299 - B2_Mm2 SINE B2 -154 41 1 1 833 22 0 0 0 chr11 32566827 32566849 -89277007 + AT_rich Low_complexity Low_complexity 1 22 0 1 833 625 221 0 0 chr11 32567308 32567430 -89276426 - B3 SINE B2 -93 123 2 1 833 748 203 0 26 chr11 32567679 32567831 -89276025 - B1_Mus1 SINE Alu 0 148 1 1 833 527 276 155 24 chr11 32567935 32568173 -89275683 - B4 SINE B4 -20 272 4 1 833 597 277 110 21 chr11 32568218 32568454 -89275402 - B4 SINE B4 0 292 36 1 833 242 233 132 52 chr11 32568451 32568571 -89275285 - B1F2 SINE Alu -19 130 12 1 833 1428 137 62 21 chr11 32568644 32568980 -89274876 + RMER4A LTR ERVK 6 386 -80 1 833 245 182 0 18 chr11 32568980 32569036 -89274820 + CT-rich Low_complexity Low_complexity 3 57 0 1 833 774 94 8 8 chr11 32569036 32569154 -89274702 + RMER4A LTR ERVK 349 466 0 1 833 1206 20 7 20 chr11 32569479 32569628 -89274228 - B1_Mus2 SINE Alu 0 147 1 1 833 311 273 38 106 chr11 32570385 32570545 -89273311 - B1F SINE Alu 0 149 1 1 833 21 0 0 0 chr11 32572665 32572686 -89271170 + GC_rich Low_complexity Low_complexity 1 21 0 2 833 450 298 63 34 chr11 32574260 32574465 -89269391 - B4A SINE B4 0 292 82 2 833 207 0 0 0 chr11 32574465 32574488 -89269368 + (T)n Simple_repeat Simple_repeat 1 23 0 2 833 342 284 18 27 chr11 32574512 32574624 -89269232 - B3A SINE B2 -87 111 1 2 833 603 241 15 88 chr11 32574907 32575112 -89268744 - B3A SINE B2 0 198 9 2 833 1486 22 73 0 chr11 32575194 32575373 -89268483 - B2_Mm1a SINE B2 0 193 2 2 833 351 65 0 0 chr11 32575534 32575580 -89268276 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2 833 256 290 29 0 chr11 32577397 32577466 -89266390 + PB1D10 SINE Alu 40 110 -7 2 833 381 329 27 34 chr11 32577501 32577649 -89266207 + RSINE1 SINE B4 1 147 -18 2 833 228 250 119 0 chr11 32577992 32578076 -89265780 + BC1_Mm scRNA scRNA 3 96 -56 2 833 199 242 62 22 chr11 32578702 32578783 -89265073 - MIRb SINE MIR -179 89 3 2 833 35 0 0 0 chr11 32578891 32578926 -89264930 + AT_rich Low_complexity Low_complexity 1 35 0 2 833 1205 54 0 0 chr11 32579060 32579207 -89264649 - B1_Mm SINE Alu 0 147 1 2 833 198 0 0 0 chr11 32579222 32579244 -89264612 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 833 911 136 0 14 chr11 32579244 32579386 -89264470 - B1_Mur4 SINE Alu -9 141 2 2 833 30 27 0 0 chr11 32582211 32582248 -89261608 + AT_rich Low_complexity Low_complexity 1 37 0 2 833 254 278 0 14 chr11 32582260 32582333 -89261523 - ID2 SINE ID -9 74 3 2 833 200 304 0 143 chr11 32582709 32582870 -89260986 - MIRb SINE MIR -84 184 47 2 833 252 0 0 0 chr11 32582920 32582948 -89260908 + (T)n Simple_repeat Simple_repeat 1 28 0 2 833 1520 53 16 0 chr11 32583254 32583441 -89260415 + B2_Mm2 SINE B2 2 191 -4 2 833 219 69 0 0 chr11 32583472 32583501 -89260355 + (CATA)n Simple_repeat Simple_repeat 3 31 0 2 833 278 250 0 123 chr11 32584805 32584878 -89258978 + ID4_ SINE ID 6 69 -14 2 833 221 211 0 0 chr11 32585369 32585407 -89258449 + PB1D10 SINE Alu 13 50 -67 2 833 714 194 0 23 chr11 32585590 32585722 -89258134 + RSINE1 SINE B4 3 131 -34 2 833 207 0 0 0 chr11 32585735 32585758 -89258098 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 833 206 128 0 25 chr11 32586329 32586369 -89257487 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 833 491 161 0 51 chr11 32586489 32586587 -89257269 - PB1D10 SINE Alu -1 116 24 2 833 2854 0 0 0 chr11 32586634 32586945 -89256911 - L1Md_T LINE L1 0 6582 6272 2 833 471 246 82 0 chr11 32587181 32587291 -89256565 + B3A SINE B2 1 119 -79 2 833 577 44 156 0 chr11 32587829 32587919 -89255937 + MTB LTR MaLR 297 400 0 2 833 534 103 0 0 chr11 32588307 32588385 -89255471 + (TCC)n Simple_repeat Simple_repeat 1 78 0 2 833 990 109 7 20 chr11 32588779 32588929 -89254927 + B1_Mus1 SINE Alu 1 148 0 2 833 509 229 41 41 chr11 32589171 32589317 -89254539 - B1_Mus2 SINE Alu 0 147 2 2 833 734 148 94 88 chr11 32590086 32590256 -89253600 - B2_Mm2 SINE B2 -23 172 2 2 833 374 312 9 18 chr11 32590487 32590598 -89253258 - RSINE1 SINE B4 -55 110 1 2 833 1080 303 28 23 chr11 32590769 32591164 -89252692 + Lx8 LINE L1 6785 7181 -292 2 833 343 271 59 8 chr11 32591415 32591534 -89252322 - B4A SINE B4 -60 232 108 2 833 221 226 0 31 chr11 32591638 32591659 -89252197 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 833 275 162 162 0 chr11 32591659 32591727 -89252129 + ID4_ SINE ID 3 81 -2 2 833 221 226 0 31 chr11 32591727 32591769 -89252087 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 833 266 259 170 18 chr11 32592507 32592672 -89251184 - L1MC4a LINE L1 -860 7022 6833 2 833 410 184 175 0 chr11 32593184 32593287 -89250569 + B1_Mus2 SINE Alu 27 147 0 2 833 40 73 0 0 chr11 32593311 32593393 -89250463 + AT_rich Low_complexity Low_complexity 1 82 0 2 833 583 237 9 0 chr11 32593393 32593507 -89250349 + B1F2 SINE Alu 1 115 -34 2 833 244 315 0 0 chr11 32593540 32593613 -89250243 - ID2 SINE ID -10 73 1 2 833 468 209 83 30 chr11 32593743 32593876 -89249980 - B1_Mus2 SINE Alu -1 146 7 2 833 274 222 0 73 chr11 32594002 32594070 -89249786 + ID4 SINE ID 5 67 -16 2 833 231 254 0 73 chr11 32594798 32594866 -89248990 - ID4 SINE ID -16 67 5 2 833 228 137 0 0 chr11 32594998 32595049 -89248807 + (T)n Simple_repeat Simple_repeat 1 51 0 2 833 862 188 7 7 chr11 32595064 32595214 -89248642 + B1_Mur4 SINE Alu 1 150 0 2 833 500 221 36 64 chr11 32595254 32595394 -89248462 - B1_Mur1 SINE Alu -12 137 2 2 833 296 321 39 85 chr11 32595394 32595426 -89248430 - B4 SINE B4 -207 85 61 2 833 327 215 41 41 chr11 32595448 32595545 -89248311 - RSINE1 SINE B4 -57 108 12 2 833 213 108 0 0 chr11 32595546 32595583 -89248273 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 833 334 211 111 5 chr11 32595631 32595730 -89248126 - L1MC LINE L1 -1152 4994 4887 2 833 310 194 84 21 chr11 32595829 32595924 -89247932 - B3 SINE B2 -10 206 106 2 833 234 252 51 73 chr11 32595938 32596075 -89247781 - L1MC LINE L1 -1434 4706 4573 2 833 499 204 10 30 chr11 32596185 32596286 -89247570 - B3 SINE B2 -114 102 4 2 833 423 206 41 0 chr11 32596378 32596475 -89247381 - L1MC LINE L1 -2069 4077 3977 2 833 305 301 82 20 chr11 32596835 32596981 -89246875 - L1MD LINE L1 -1979 4167 4013 2 833 552 161 50 25 chr11 32597004 32597125 -89246731 - B1_Mur4 SINE Alu 0 150 27 2 833 276 255 110 85 chr11 32597410 32597423 -89246433 - L1M3 LINE L1 -1434 4706 4695 2 833 243 0 0 0 chr11 32597423 32597450 -89246406 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 833 276 255 110 85 chr11 32597450 32597672 -89246184 - L1M3 LINE L1 -1446 4694 4465 2 833 209 274 0 16 chr11 32597715 32597778 -89246078 + CT-rich Low_complexity Low_complexity 2 63 0 2 833 411 251 306 0 chr11 32598554 32598753 -89245103 + B4A SINE B4 34 292 0 2 833 711 273 86 0 chr11 32600712 32600910 -89242946 + B3 SINE B2 1 215 -1 2 833 281 335 138 44 chr11 32601005 32601040 -89242816 + MER2 DNA MER2_type 40 75 -270 2 833 1406 72 0 53 chr11 32601040 32601246 -89242610 + B2_Mm2 SINE B2 1 195 0 2 833 281 335 138 44 chr11 32601246 32601485 -89242371 + MER2 DNA MER2_type 76 340 -5 2 833 22 0 0 0 chr11 32603065 32603087 -89240769 + AT_rich Low_complexity Low_complexity 1 22 0 2 833 243 194 81 0 chr11 32603213 32603275 -89240581 - ID4 SINE ID -16 67 1 2 833 264 315 52 43 chr11 32603294 32603410 -89240446 - B1F1 SINE Alu -12 137 21 2 833 400 263 142 8 chr11 32603800 32603934 -89239922 + RSINE1 SINE B4 4 155 -10 2 833 228 250 72 14 chr11 32604351 32604420 -89239436 - PB1D7 SINE Alu -26 94 22 2 833 2348 140 22 39 chr11 32606025 32606441 -89237415 - RMER1B Other Other -1 1065 657 2 833 936 100 49 14 chr11 32607016 32607158 -89236698 - B1_Mus1 SINE Alu -1 147 1 2 833 922 99 30 0 chr11 32607256 32607387 -89236469 + B1_Mus1 SINE Alu 2 136 -12 2 833 225 0 0 0 chr11 32609988 32610013 -89233843 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 833 701 121 113 0 chr11 32610226 32610350 -89233506 + B1_Mus2 SINE Alu 9 146 -1 2 833 1164 44 0 0 chr11 32610563 32610700 -89233156 + B1_Mus2 SINE Alu 1 137 -10 2 833 216 0 0 0 chr11 32610700 32610724 -89233132 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 833 296 310 60 0 chr11 32610817 32610917 -89232939 + MER5A1 DNA MER1_type 9 114 -52 2 833 230 208 211 20 chr11 32611063 32611146 -89232710 + MER44B DNA MER2_type 351 442 -108 2 833 294 29 0 0 chr11 32611146 32611181 -89232675 + (TATG)n Simple_repeat Simple_repeat 3 37 0 2 833 230 208 211 20 chr11 32611181 32611244 -89232612 + MER44B DNA MER2_type 443 524 -26 2 833 415 146 0 0 chr11 32611266 32611348 -89232508 - L1Md_F2 LINE L1 0 6582 6501 2 833 301 291 81 0 chr11 32612351 32612437 -89231419 + B1F SINE Alu 1 93 -56 2 833 867 134 196 0 chr11 32612638 32612817 -89231039 - B3 SINE B2 0 216 3 2 833 256 260 92 82 chr11 32612923 32613107 -89230749 - L1MC1 LINE L1 -20 6313 6128 2 833 628 189 278 6 chr11 32613839 32614015 -89229841 - MTD LTR MaLR 0 419 196 2 833 253 229 32 16 chr11 32614000 32614062 -89229794 - MTD LTR MaLR -358 63 1 2 833 189 0 0 0 chr11 32615016 32615037 -89228819 + (A)n Simple_repeat Simple_repeat 1 21 0 2 833 259 307 11 33 chr11 32616481 32616572 -89227284 + MIRb SINE MIR 140 228 -40 2 833 187 269 73 15 chr11 32616940 32617008 -89226848 - MER5A DNA MER1_type -26 163 92 2 833 216 328 75 33 chr11 32617214 32617334 -89226522 + L3 LINE CR1 2161 2285 -2204 2 833 1189 41 0 7 chr11 32617918 32618065 -89225791 + B1_Mm SINE Alu 2 147 0 2 833 216 355 72 36 chr11 32618805 32618998 -89224858 + L3 LINE CR1 3707 3906 -583 2 833 387 210 11 80 chr11 32619613 32619701 -89224155 - RSINE1 SINE B4 0 165 84 2 833 1328 77 16 6 chr11 32619820 32620003 -89223853 - B2_Mm2 SINE B2 -4 191 7 2 833 231 291 18 0 chr11 32620127 32620182 -89223674 + MIRb SINE MIR 25 80 -188 2 833 1046 228 19 0 chr11 32620918 32621124 -89222732 + B3 SINE B2 1 210 -6 2 833 324 282 103 29 chr11 32623798 32623973 -89219883 - MIRb SINE MIR -11 257 70 2 833 226 302 77 143 chr11 32627366 32627575 -89216281 - MLT1J-int LTR MaLR -497 890 696 2 833 410 242 118 77 chr11 32628775 32628945 -89214911 + MER2 DNA MER2_type 1 177 -168 2 833 581 144 53 18 chr11 32628945 32629058 -89214798 + PB1D9 SINE Alu 1 117 -3 2 833 290 296 10 0 chr11 32629084 32629182 -89214674 + MER2 DNA MER2_type 165 263 -82 2 833 285 275 120 11 chr11 32630025 32630117 -89213739 - Tigger5 DNA MER2_type -1 2405 2304 3 833 416 293 177 35 chr11 32630130 32630328 -89213528 - Tigger5 DNA MER2_type -2173 233 8 3 833 217 367 111 0 chr11 32630378 32630468 -89213388 - PB1D10 SINE Alu -17 100 1 3 833 282 29 0 0 chr11 32630586 32630621 -89213235 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 833 482 193 119 0 chr11 32630656 32630765 -89213091 - B1_Mus2 SINE Alu -17 130 9 3 833 795 93 0 0 chr11 32630776 32630894 -89212962 + (TTCC)n Simple_repeat Simple_repeat 1 118 0 3 833 234 0 0 0 chr11 32631802 32631828 -89212028 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 833 454 307 49 65 chr11 32631853 32632160 -89211696 - L1MD3 LINE L1 -2083 5912 5611 3 833 952 302 105 11 chr11 32632159 32632863 -89210993 + L1MC1 LINE L1 5064 5840 -493 3 833 255 290 43 86 chr11 32635739 32635856 -89208000 - L2c LINE L2 -25 3362 3251 3 833 647 268 111 29 chr11 32635970 32636285 -89207571 - L1MB7 LINE L1 -166 6018 5678 3 833 191 32 65 0 chr11 32636814 32636845 -89207011 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 104 1200 55 0 7 chr11 32636852 32637000 -89206856 - B1_Mm SINE Alu 0 147 1 3 834 921 125 25 6 chr11 32637006 32637167 -89206689 - Lx2 LINE L1 0 6997 6834 3 834 545 202 11 0 chr11 32637168 32637262 -89206594 + B3 SINE B2 20 114 -102 3 834 596 234 0 18 chr11 32637313 32637426 -89206430 + B3 SINE B2 100 210 -6 3 834 831 237 41 33 chr11 32637458 32637758 -89206098 - L1MB7 LINE L1 -870 5270 4941 3 834 389 264 90 67 chr11 32639493 32639592 -89204264 + RSINE1 SINE B4 29 135 -30 3 834 297 0 0 0 chr11 32639592 32639625 -89204231 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 834 389 264 90 67 chr11 32639625 32639659 -89204197 + RSINE1 SINE B4 136 165 0 3 834 28 0 0 0 chr11 32640549 32640577 -89203279 + AT_rich Low_complexity Low_complexity 1 28 0 3 834 231 272 30 147 chr11 32640616 32640814 -89203042 - YREP_Mm Unknown Unknown -1421 391 217 3 834 536 246 16 71 chr11 32640708 32640835 -89203021 + ID_B1 SINE B4 80 199 -25 3 834 606 155 68 17 chr11 32641465 32641583 -89202273 - B3 SINE B2 -92 124 1 3 834 1478 70 16 0 chr11 32641711 32641897 -89201959 + B2_Mm2 SINE B2 1 189 -6 3 834 1518 50 0 6 chr11 32642035 32642217 -89201639 + B2_Mm2 SINE B2 1 181 -14 3 834 1148 69 7 0 chr11 32643441 32643586 -89200270 + B1_Mus2 SINE Alu 1 146 -1 3 834 382 360 74 19 chr11 32643741 32643956 -89199900 + MER58B DNA MER1_type 3 229 -112 3 834 2370 148 11 80 chr11 32647525 32647965 -89195891 + MTC LTR MaLR 4 413 -8 3 834 1555 48 27 0 chr11 32648375 32648563 -89195293 + B2_Mm1a SINE B2 1 193 0 3 834 1038 75 8 0 chr11 32648591 32648725 -89195131 + B1_Mus1 SINE Alu 14 148 0 3 834 1118 203 218 7 chr11 32648774 32649067 -89194789 - MTD LTR MaLR -62 357 3 3 834 624 256 53 0 chr11 32649072 32649205 -89194651 - B3 SINE B2 -30 186 47 3 834 336 243 70 35 chr11 32649749 32649864 -89193992 - PB1D9 SINE Alu 0 120 2 3 834 324 0 0 0 chr11 32650757 32650793 -89193063 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 3 834 898 175 0 0 chr11 32650793 32650930 -89192926 - B1_Mur1 SINE Alu -12 137 1 3 834 247 280 101 14 chr11 32651352 32651529 -89192327 - L2a LINE L2 -167 3208 3010 3 834 237 159 0 0 chr11 32652034 32652078 -89191778 + GA-rich Low_complexity Low_complexity 2 45 0 3 834 391 298 53 0 chr11 32652852 32652983 -89190873 + L2a LINE L2 3025 3162 -264 3 834 1072 42 48 12 chr11 32653083 32653251 -89190605 + (TTCCC)n Simple_repeat Simple_repeat 3 176 0 3 834 761 137 0 8 chr11 32653251 32653383 -89190473 + (TTTC)n Simple_repeat Simple_repeat 1 131 0 3 834 705 159 14 43 chr11 32653385 32653547 -89190309 - B1_Mur4 SINE Alu -7 140 1 3 834 383 241 0 131 chr11 32653547 32653587 -89190269 - MT2B LTR ERVL -450 151 132 3 834 396 311 49 0 chr11 32653648 32653770 -89190086 - MER2 DNA MER2_type 0 345 218 3 834 190 191 16 77 chr11 32654122 32654191 -89189665 - MIR SINE MIR -102 160 100 3 834 253 307 95 90 chr11 32654291 32654502 -89189354 - MTEa LTR MaLR -110 269 58 3 834 1507 128 145 35 chr11 32655645 32655804 -89188052 - ORR1B1 LTR MaLR 0 329 170 3 834 2299 86 53 17 chr11 32655804 32656159 -89187697 + RLTR9A LTR ERVK 1 368 0 3 834 1507 151 124 39 chr11 32656159 32656327 -89187529 - ORR1B1 LTR MaLR -153 174 1 3 834 3021 212 86 45 chr11 32656327 32657311 -89186545 - ORR1B1-int LTR MaLR 0 1370 364 3 834 6468 126 16 1 chr11 32657311 32658321 -89185535 + L1_Mur2 LINE L1 4433 5457 -420 3 834 1083 138 11 28 chr11 32658322 32658501 -89185355 + B2_Mm1t SINE B2 4 179 -14 3 834 337 157 19 30 chr11 32658522 32658680 -89185176 + B2_Mm2 SINE B2 2 194 -1 3 834 8117 125 106 11 chr11 32658680 32660137 -89183719 + Lx5 LINE L1 5446 7050 0 3 834 824 152 0 20 chr11 32660150 32660303 -89183553 - ORR1B1-int LTR MaLR -998 372 228 3 834 1662 135 123 66 chr11 32660306 32660640 -89183216 - ORR1B1 LTR MaLR 0 394 42 3 834 1098 177 67 5 chr11 32660646 32660856 -89183000 - ORR1B1-int LTR MaLR -1285 224 2 3 834 2393 143 23 20 chr11 32660857 32661250 -89182606 - ORR1B1 LTR MaLR 0 394 1 3 834 323 289 15 30 chr11 32661486 32661618 -89182238 + (ATG)n Simple_repeat Simple_repeat 1 130 0 3 834 325 171 71 163 chr11 32661618 32661716 -89182140 + ORR1E LTR MaLR 5 93 -266 3 834 2161 137 81 8 chr11 32661716 32662076 -89181780 + ORR1B1 LTR MaLR 1 386 -8 3 834 377 284 127 94 chr11 32662094 32662339 -89181517 + ORR1E LTR MaLR 103 355 -4 3 834 233 327 32 3 chr11 32662474 32662585 -89181271 + MIRc SINE MIR 6 121 -147 3 834 213 323 64 94 chr11 32662778 32662949 -89180907 + MIRb SINE MIR 59 224 -44 3 834 2137 158 7 89 chr11 32663029 32663454 -89180402 + ORR1B1 LTR MaLR 5 394 0 3 834 329 284 33 49 chr11 32664388 32664510 -89179346 - MIR3 SINE MIR -82 126 7 3 834 227 31 31 0 chr11 32665014 32665046 -89178810 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 3 834 321 310 156 76 chr11 32665925 32666201 -89177655 - MLT1J LTR MaLR -84 428 131 3 834 612 67 0 0 chr11 32666514 32666604 -89177252 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 834 1284 41 0 0 chr11 32666971 32667118 -89176738 + B1_Mus1 SINE Alu 2 148 0 3 834 266 311 48 10 chr11 32667306 32667410 -89176446 + L4 LINE RTE 1707 1814 -215 3 834 1241 75 0 0 chr11 32668523 32668684 -89175172 + B2_Mm2 SINE B2 4 164 -31 3 834 447 314 28 109 chr11 32668871 32669082 -89174774 - ORR1E LTR MaLR -2 357 164 3 834 252 184 0 0 chr11 32669096 32669145 -89174711 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 834 279 256 79 34 chr11 32669179 32669268 -89174588 - ORR1E LTR MaLR -168 191 99 3 834 447 256 107 0 chr11 32669307 32669428 -89174428 - ORR1E LTR MaLR -225 134 1 3 834 311 255 0 9 chr11 32669520 32669627 -89174229 + CT-rich Low_complexity Low_complexity 1 106 0 3 834 201 261 69 32 chr11 32669630 32669705 -89174151 - MIRc SINE MIR -76 186 108 3 834 375 78 0 0 chr11 32669765 32669816 -89174040 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 834 637 230 53 26 chr11 32669825 32669977 -89173879 - RSINE1 SINE B4 -8 157 2 3 834 977 268 155 14 chr11 32671024 32671309 -89172547 + MTD LTR MaLR 1 326 -93 3 834 1662 229 47 70 chr11 32671309 32671603 -89172253 - MTD LTR MaLR -2 417 106 3 834 642 192 18 131 chr11 32671603 32671771 -89172085 + B1F2 SINE Alu 1 149 0 3 834 1662 229 47 70 chr11 32671771 32671903 -89171953 - MTD LTR MaLR -314 105 1 3 834 230 215 31 0 chr11 32671918 32671983 -89171873 + (CCAA)n Simple_repeat Simple_repeat 2 68 0 3 834 3421 28 5 2 chr11 32672020 32672415 -89171441 + MTA_Mm LTR MaLR 1 396 0 3 834 247 360 47 31 chr11 32672942 32673071 -89170785 - MLT1A1 LTR MaLR -273 135 5 3 834 245 280 204 0 chr11 32673138 32673231 -89170625 - Tigger5 DNA MER2_type -2294 112 1 3 834 3093 71 10 2 chr11 32674107 32674504 -89169352 + MTB LTR MaLR 1 400 0 3 834 1116 279 91 0 chr11 32675877 32676293 -89167563 + L1M2 LINE L1 3791 4244 -1899 3 834 384 22 0 0 chr11 32676333 32676378 -89167478 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 834 1733 217 51 129 chr11 32676476 32677065 -89166791 + RMER19C LTR ERVK 71 737 0 3 834 441 0 0 0 chr11 32677247 32677296 -89166560 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 3 834 577 294 13 33 chr11 32677366 32677517 -89166339 + RSINE1 SINE B4 1 148 -17 3 834 589 284 248 22 chr11 32677587 32677994 -89165862 - MLT1F1 LTR MaLR -2 567 69 3 834 454 310 41 61 chr11 32678377 32678667 -89165189 + L1M5 LINE L1 5540 5825 -2057 3 834 189 0 0 0 chr11 32678760 32678781 -89165075 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 834 279 0 0 0 chr11 32678781 32678812 -89165044 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 834 788 250 26 0 chr11 32678822 32678974 -89164882 - B3A SINE B2 -42 156 1 3 834 272 266 52 61 chr11 32679409 32679547 -89164309 - L1MC3 LINE L1 -1277 6765 6610 3 834 910 60 15 0 chr11 32679547 32679681 -89164175 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 3 834 271 278 6 147 chr11 32679681 32679719 -89164137 - L1MC3 LINE L1 -1397 6645 6614 3 834 282 29 0 0 chr11 32679719 32679754 -89164102 + (TATG)n Simple_repeat Simple_repeat 3 37 0 3 834 942 133 28 10 chr11 32679754 32680053 -89163803 + (TCTA)n Simple_repeat Simple_repeat 1 304 0 3 834 2235 116 65 3 chr11 32680107 32680445 -89163411 + ORR1B2 LTR MaLR 1 359 -8 3 834 414 0 0 0 chr11 32681522 32681568 -89162288 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 3 834 513 44 0 0 chr11 32681610 32681678 -89162178 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 834 223 283 2 17 chr11 32681770 32681836 -89162020 - L2a LINE L2 -27 3399 3293 3 834 513 47 0 0 chr11 32681963 32682027 -89161829 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 834 513 204 58 10 chr11 32682086 32682190 -89161666 - PB1D9 SINE Alu -10 110 2 3 834 635 239 101 7 chr11 32682222 32682361 -89161495 + B3A SINE B2 1 152 -46 3 834 498 17 0 0 chr11 32682362 32682421 -89161435 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 834 553 324 103 47 chr11 32683244 32683584 -89160272 + ORR1E LTR MaLR 1 359 0 3 834 497 262 0 0 chr11 32683739 32683846 -89160010 + PB1D10 SINE Alu 3 109 -8 3 834 219 69 0 0 chr11 32684026 32684055 -89159801 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 3 834 931 241 184 7 chr11 32684057 32684329 -89159527 - MTE2b LTR MaLR -54 325 6 4 834 482 0 17 0 chr11 32684600 32684658 -89159198 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 834 1135 65 0 0 chr11 32684921 32685059 -89158797 + B1_Mm SINE Alu 1 138 -9 4 834 275 0 0 28 chr11 32685059 32685095 -89158761 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 834 186 345 35 0 chr11 32686510 32686568 -89157288 + MIR3 SINE MIR 145 204 -4 4 834 1701 220 24 12 chr11 32688532 32688868 -89154988 - MTEa LTR MaLR -37 342 3 4 834 603 244 8 0 chr11 32689136 32689255 -89154601 - B3A SINE B2 -72 126 7 4 834 1672 181 71 24 chr11 32689417 32689756 -89154100 + ORR1B2 LTR MaLR 5 359 -8 4 834 937 151 95 53 chr11 32690893 32691082 -89152774 + MTD LTR MaLR 13 209 -210 4 834 1218 61 0 7 chr11 32691082 32691230 -89152626 + B1_Mus2 SINE Alu 1 147 0 4 834 505 249 58 121 chr11 32691230 32691264 -89152592 + MTD LTR MaLR 192 222 -174 4 834 1266 176 9 18 chr11 32691294 32691520 -89152336 + MTD LTR MaLR 196 419 0 4 834 343 315 325 4 chr11 32691524 32691773 -89152083 - MER31B LTR ERV1 -137 329 1 4 834 1172 242 84 21 chr11 32691902 32692235 -89151621 + ORR1E LTR MaLR 4 357 -2 4 834 732 181 7 43 chr11 32693255 32693394 -89150462 - B1_Mur4 SINE Alu -13 137 4 4 834 715 253 0 41 chr11 32693472 32693641 -89150215 - RSINE1 SINE B4 0 165 4 4 834 189 345 206 7 chr11 32693935 32694081 -89149775 + MIR SINE MIR 28 202 -60 4 834 384 296 96 0 chr11 32694082 32694207 -89149649 - MER2 DNA MER2_type -1 344 208 4 834 347 292 0 62 chr11 32695756 32695869 -89147987 - MLT1A1 LTR MaLR -1 407 302 4 834 236 273 0 70 chr11 32695967 32696038 -89147818 - MLT1A1 LTR MaLR -272 102 37 4 834 241 279 59 0 chr11 32696254 32696322 -89147534 - MLT1K LTR MaLR -331 264 193 4 834 462 287 17 84 chr11 32696359 32696394 -89147462 + ID_B1 SINE B4 55 218 -3 4 834 610 263 7 28 chr11 32696394 32696535 -89147321 + B1F SINE Alu 6 143 -6 4 834 363 351 76 54 chr11 32696565 32696881 -89146975 + MER2 DNA MER2_type 17 339 -6 4 834 280 259 68 27 chr11 32697261 32697408 -89146448 + L1MA6 LINE L1 5912 6064 -236 4 834 498 307 16 8 chr11 32697436 32697564 -89146292 + RSINE1 SINE B4 7 135 -30 4 834 683 43 32 0 chr11 32697798 32697891 -89145965 + (GAAAA)n Simple_repeat Simple_repeat 1 96 0 4 834 286 233 27 14 chr11 32698121 32698195 -89145661 - MER2 DNA MER2_type -2 343 269 4 834 269 309 194 22 chr11 32698243 32698382 -89145474 - MER2 DNA MER2_type -176 169 7 4 834 237 108 0 0 chr11 32698480 32698517 -89145339 + (TTA)n Simple_repeat Simple_repeat 1 37 0 4 834 1387 150 243 35 chr11 32699531 32699897 -89143959 - RMER10A LTR ERVL 0 442 1 4 834 259 235 0 0 chr11 32700591 32700668 -89143188 - L1M5 LINE L1 -2043 5839 5763 4 834 24 0 0 0 chr11 32701465 32701489 -89142367 + AT_rich Low_complexity Low_complexity 1 24 0 4 834 314 295 140 28 chr11 32701990 32702133 -89141723 + RSINE1 SINE B4 2 160 -5 4 834 773 80 77 3 chr11 32702133 32702733 -89141123 + (TAG)n Simple_repeat Simple_repeat 1 644 0 4 834 684 90 72 0 chr11 32702776 32702943 -89140913 + (TAG)n Simple_repeat Simple_repeat 1 179 0 4 834 2110 119 6 55 chr11 32704136 32704482 -89139374 + ORR1A4 LTR MaLR 1 329 0 4 834 253 292 15 0 chr11 32704628 32704693 -89139163 - MER2 DNA MER2_type -1 344 279 4 834 1137 128 0 0 chr11 32704731 32704911 -89138945 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 834 813 122 61 0 chr11 32704946 32705077 -89138779 + RMER4B LTR ERVK 1 139 -446 4 834 208 365 0 34 chr11 32705081 32705169 -89138687 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 834 360 230 61 9 chr11 32705169 32705283 -89138573 - MER2 DNA MER2_type -91 254 135 4 834 1943 265 114 20 chr11 32705283 32705999 -89137857 - Lx8 LINE L1 -2 7471 6688 4 834 1334 275 49 78 chr11 32706012 32706428 -89137428 - Lx8 LINE L1 -862 6611 6191 4 834 597 28 0 0 chr11 32706428 32706499 -89137357 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 834 1334 275 49 78 chr11 32706499 32706535 -89137321 - Lx8 LINE L1 -1283 6190 6168 4 834 878 163 7 20 chr11 32706535 32706685 -89137171 - B1_Mur3 SINE Alu -1 148 1 4 834 1334 275 49 78 chr11 32706685 32706760 -89137096 - Lx8 LINE L1 -1306 6167 6098 4 834 1264 67 54 27 chr11 32706951 32707135 -89136721 + B2_Mm2 SINE B2 1 189 -6 4 834 326 277 42 0 chr11 32707213 32707332 -89136524 - L1M5 LINE L1 -941 5205 5082 4 834 624 245 11 29 chr11 32707697 32707885 -89135971 - B3A SINE B2 0 216 39 4 834 1176 76 0 0 chr11 32707893 32708038 -89135818 + B1_Mm SINE Alu 3 147 0 4 834 1163 97 11 0 chr11 32708058 32708233 -89135623 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 4 834 235 255 0 0 chr11 32708242 32708289 -89135567 - B3 SINE B2 -169 47 1 4 834 383 300 83 90 chr11 32708289 32708539 -89135317 - L1M5 LINE L1 -3747 2399 2154 4 834 225 338 64 7 chr11 32708780 32708920 -89134936 - L1MB5 LINE L1 -47 6127 5980 4 834 189 107 0 0 chr11 32708979 32709007 -89134849 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 834 257 254 56 0 chr11 32709679 32709750 -89134106 - MIRc SINE MIR -3 265 191 4 834 613 299 76 4 chr11 32709774 32709999 -89133857 + MIR SINE MIR 22 262 0 4 834 260 344 50 57 chr11 32709926 32710184 -89133672 - MIRb SINE MIR -7 261 1 4 834 441 0 0 0 chr11 32710783 32710832 -89133024 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 4 834 1258 75 0 0 chr11 32710832 32710992 -89132864 - B2_Mm2 SINE B2 -34 161 2 4 834 398 252 226 0 chr11 32711018 32711133 -89132723 + MLT1K LTR MaLR 46 186 -409 4 834 826 250 21 26 chr11 32712675 32712868 -89130988 - B3A SINE B2 -6 192 1 4 834 258 192 0 0 chr11 32712934 32712986 -89130870 + (TAG)n Simple_repeat Simple_repeat 2 53 0 4 834 533 296 5 78 chr11 32713571 32713594 -89130262 - B4A SINE B4 0 292 273 4 834 282 29 0 0 chr11 32713594 32713629 -89130227 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 834 533 296 5 78 chr11 32713629 32713796 -89130060 - B4A SINE B4 -20 272 116 4 834 320 280 15 39 chr11 32713921 32714051 -89129805 - Lx7 LINE L1 -9 7687 7561 4 834 230 253 10 21 chr11 32714074 32714096 -89129760 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 4 834 576 0 0 0 chr11 32714096 32714160 -89129696 + (GAA)n Simple_repeat Simple_repeat 3 66 0 4 834 230 253 10 21 chr11 32714160 32714234 -89129622 + (CAAA)n Simple_repeat Simple_repeat 2 75 0 4 834 583 215 23 0 chr11 32714275 32714405 -89129451 - Lx7 LINE L1 -725 6971 6839 4 834 2376 168 50 2 chr11 32714684 32715085 -89128771 + MTC LTR MaLR 1 420 -1 4 834 386 250 0 0 chr11 32715402 32715494 -89128362 + RMER1B Other Other 60 151 -915 4 834 5190 162 81 15 chr11 32715853 32716437 -89127419 + RMER1B Other Other 4 634 -432 4 834 2881 55 0 6 chr11 32716437 32716785 -89127071 + ORR1A1 LTR MaLR 1 346 0 4 834 5190 162 81 15 chr11 32716785 32717196 -89126660 + RMER1B Other Other 635 1065 -1 4 834 243 0 0 0 chr11 32717778 32717805 -89126051 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 834 510 319 184 25 chr11 32717884 32718161 -89125695 - MER2 DNA MER2_type 0 345 25 4 834 226 329 0 0 chr11 32718602 32718678 -89125178 + (CATA)n Simple_repeat Simple_repeat 3 78 0 4 834 217 152 0 0 chr11 32720747 32720780 -89123076 + T-rich Low_complexity Low_complexity 1 33 0 4 834 991 131 11 11 chr11 32720780 32720958 -89122898 + CT-rich Low_complexity Low_complexity 3 180 0 4 834 317 361 76 0 chr11 32720958 32721102 -89122754 - HAL1-3A_ME LINE L1 -419 2439 2285 4 834 577 194 24 6 chr11 32721129 32721295 -89122561 + CT-rich Low_complexity Low_complexity 4 172 0 4 834 331 267 18 24 chr11 32721254 32721423 -89122433 + C-rich Low_complexity Low_complexity 1 168 0 4 834 233 189 0 70 chr11 32721426 32721483 -89122373 + polypyrimidine Low_complexity Low_complexity 2 54 0 4 834 201 175 0 0 chr11 32721483 32721523 -89122333 + T-rich Low_complexity Low_complexity 2 41 0 4 834 1183 88 0 0 chr11 32721526 32721674 -89122182 - B1_Mus1 SINE Alu 0 148 1 4 834 337 258 141 62 chr11 32721700 32721828 -89122028 + L2c LINE L2 3029 3166 -221 4 834 425 232 125 7 chr11 32722403 32722555 -89121301 - L1ME1 LINE L1 -11 6168 5999 4 834 486 299 61 29 chr11 32722730 32723009 -89120847 - L1ME1 LINE L1 -454 5725 5438 4 834 729 213 106 50 chr11 32723026 32723224 -89120632 - B3 SINE B2 -4 212 4 4 834 402 282 58 63 chr11 32723226 32723449 -89120407 - L1ME1 LINE L1 -744 5402 5181 4 834 905 161 41 23 chr11 32723459 32723631 -89120225 - B2_Mm2 SINE B2 -19 176 2 4 834 281 301 50 28 chr11 32723743 32723924 -89119932 - L1ME1 LINE L1 -1098 5048 4864 4 834 606 211 0 0 chr11 32724690 32724865 -89118991 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 834 352 194 42 0 chr11 32724892 32724964 -89118892 + HAL1-3A_ME LINE L1 1976 2050 -808 4 834 467 378 42 25 chr11 32725367 32725603 -89118253 - MER2 DNA MER2_type -59 286 47 4 834 1406 227 132 34 chr11 32725659 32726038 -89117818 - MTD LTR MaLR -3 416 1 4 834 207 0 0 0 chr11 32726125 32726148 -89117708 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 834 806 223 21 21 chr11 32726261 32726449 -89117407 + RLTR12A LTR ERVK 43 230 -338 4 834 786 244 24 14 chr11 32726496 32726704 -89117152 - B3 SINE B2 -6 210 1 4 834 589 269 70 22 chr11 32726778 32727177 -89116679 - L1MD LINE L1 -841 5518 5106 4 834 647 84 0 10 chr11 32727179 32727275 -89116581 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 4 834 1122 203 19 10 chr11 32727289 32727498 -89116358 + B3 SINE B2 6 216 0 4 834 383 283 232 14 chr11 32727581 32727701 -89116155 - L1MD LINE L1 -1277 4869 4705 4 834 1032 32 0 0 chr11 32727701 32727825 -89116031 + (TC)n Simple_repeat Simple_repeat 1 124 0 4 834 383 283 232 14 chr11 32727825 32728006 -89115850 - L1MD LINE L1 -1442 4704 4502 4 834 180 0 0 0 chr11 32728006 32728026 -89115830 + (ATTAG)n Simple_repeat Simple_repeat 3 22 0 4 834 383 283 232 14 chr11 32728026 32728085 -89115771 - L1MD LINE L1 -1645 4501 4431 4 834 6996 39 1 13 chr11 32728317 32729159 -89114697 - L1Md_F2 LINE L1 0 6582 5751 4 834 2496 159 39 125 chr11 32729896 32730512 -89113344 + RLTR12A LTR ERVK 1 563 -5 4 834 299 355 11 0 chr11 32730587 32730680 -89113176 - MIRb SINE MIR -9 259 166 4 834 243 191 0 0 chr11 32730773 32730820 -89113036 - Charlie19a DNA Charlie -194 192 146 4 834 1762 166 80 58 chr11 32731200 32731391 -89112465 - ORR1D1 LTR MaLR -2 372 181 4 834 655 88 18 0 chr11 32731391 32731504 -89112352 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 4 834 1762 166 80 58 chr11 32731504 32731676 -89112180 - ORR1D1 LTR MaLR -194 180 1 4 834 226 243 56 28 chr11 32732789 32732861 -89110995 - MIRb SINE MIR -25 243 170 4 834 862 307 89 56 chr11 32733102 32733218 -89110638 - MLT1D LTR MaLR -7 498 387 4 834 1873 196 69 5 chr11 32733218 32733608 -89110248 - MTD LTR MaLR 0 419 5 4 834 862 307 89 56 chr11 32733608 32733953 -89109903 - MLT1D LTR MaLR -119 386 22 4 834 665 146 0 0 chr11 32734082 32734185 -89109671 + URR1B DNA MER1_type 83 185 -40 5 834 1386 182 246 6 chr11 32735807 32736144 -89107712 + MTD LTR MaLR 2 419 0 5 834 3836 225 95 93 chr11 32736144 32737394 -89106462 + MTD-int LTR MaLR 1 1253 -5 5 834 1651 208 73 13 chr11 32737399 32737794 -89106062 + MTD LTR MaLR 1 419 0 5 834 205 86 29 0 chr11 32739791 32739826 -89104030 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 834 299 276 28 99 chr11 32740135 32740276 -89103580 - MIRb SINE MIR -122 146 16 5 834 536 265 0 4 chr11 32741556 32741810 -89102046 + (TG)n Simple_repeat Simple_repeat 1 252 0 5 834 239 152 0 21 chr11 32742081 32742128 -89101728 - ID_B1 SINE B4 0 224 179 5 834 322 347 112 18 chr11 32742133 32742303 -89101553 - MER110 LTR ERV1 -7 484 299 5 834 254 280 0 74 chr11 32742646 32742727 -89101129 - RMER15 LTR ERVL -109 466 392 5 834 716 273 119 17 chr11 32743024 32743318 -89100538 - Lx8 LINE L1 -532 6941 6618 5 834 392 250 54 108 chr11 32743339 32743359 -89100497 + B4 SINE B4 81 220 -72 5 834 833 133 70 0 chr11 32743359 32743487 -89100369 + B1_Mur2 SINE Alu 7 143 -6 5 834 722 171 0 7 chr11 32743491 32743644 -89100212 + GA-rich Low_complexity Low_complexity 2 153 0 5 834 469 307 72 115 chr11 32744156 32744461 -89099395 + ORR1E LTR MaLR 58 349 -10 5 834 418 299 169 75 chr11 32744578 32744940 -89098916 + MLT1A1 LTR MaLR 1 396 -12 5 834 333 318 46 67 chr11 32744992 32745039 -89098817 - L1MC5 LINE L1 -435 7526 7482 5 834 1204 196 24 0 chr11 32745039 32745248 -89098608 - B3 SINE B2 0 216 3 5 834 333 318 46 67 chr11 32745248 32745439 -89098417 - L1MC5 LINE L1 -480 7481 7293 5 834 616 339 43 59 chr11 32745807 32746130 -89097726 - MER2 DNA MER2_type -2 343 26 5 834 227 304 0 0 chr11 32746688 32746780 -89097076 + A-rich Low_complexity Low_complexity 1 92 0 5 834 867 67 0 0 chr11 32747886 32748005 -89095851 + (TG)n Simple_repeat Simple_repeat 2 120 0 5 834 226 312 72 10 chr11 32748598 32748695 -89095161 + MIR SINE MIR 37 139 -69 5 834 495 151 10 51 chr11 32748855 32748953 -89094903 - B1_Mm SINE Alu 0 147 54 5 834 259 212 267 12 chr11 32749016 32749102 -89094754 + MLT1A1 LTR MaLR 71 178 -230 5 834 446 264 35 59 chr11 32749553 32749722 -89094134 - L1MEg1 LINE L1 -5452 783 619 5 834 443 240 8 0 chr11 32750391 32750516 -89093340 + CT-rich Low_complexity Low_complexity 1 126 0 5 834 261 0 0 0 chr11 32750516 32750545 -89093311 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 834 226 174 174 0 chr11 32750571 32750617 -89093239 - MLT1K LTR MaLR -343 252 199 5 834 1593 219 53 28 chr11 32750822 32751179 -89092677 + MTD LTR MaLR 3 368 -51 5 834 255 277 161 45 chr11 32751749 32751904 -89091952 + MLT1A1 LTR MaLR 389 561 -34 5 834 187 192 56 37 chr11 32752000 32752054 -89091802 - L2b LINE L2 -5 3370 3316 5 834 317 62 0 20 chr11 32752128 32752177 -89091679 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 834 2005 154 20 82 chr11 32752378 32752410 -89091446 + RLTR11A2 LTR ERVK 1 25 -502 5 834 299 23 0 44 chr11 32752410 32752455 -89091401 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 834 1166 69 0 7 chr11 32752455 32752601 -89091255 - B1_Mus2 SINE Alu -2 145 1 5 834 2005 154 20 82 chr11 32752601 32752969 -89090887 + RLTR11A2 LTR ERVK 26 376 -151 5 834 4060 168 94 88 chr11 32753148 32753359 -89090497 + RMER19B LTR ERVK 1 150 -752 5 834 1168 71 0 0 chr11 32753359 32753500 -89090356 - B1_Mus1 SINE Alu -7 141 1 5 834 4060 168 94 88 chr11 32753500 32754185 -89089671 + RMER19B LTR ERVK 151 902 0 5 834 240 322 47 105 chr11 32754477 32754668 -89089188 - MER112 DNA MER1_type -81 180 1 5 834 348 253 32 42 chr11 32754817 32755003 -89088853 - MLT1J LTR MaLR -204 240 71 5 834 238 364 25 8 chr11 32755054 32755173 -89088683 - Tigger13a DNA MER2_type -642 129 9 5 834 266 231 125 71 chr11 32755992 32756104 -89087752 + MT-int LTR MaLR 752 869 -229 5 834 405 0 0 0 chr11 32756242 32756287 -89087569 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 834 578 306 78 41 chr11 32757016 32757261 -89086595 + B4A SINE B4 16 269 -23 5 834 333 0 0 0 chr11 32757261 32757298 -89086558 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 834 285 29 0 0 chr11 32757298 32757331 -89086525 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 834 267 388 89 49 chr11 32757878 32758103 -89085753 + MLT1A0 LTR MaLR 22 255 -307 5 834 1035 193 61 0 chr11 32758172 32758384 -89085472 - URR1B DNA MER1_type 0 225 1 5 834 457 248 31 79 chr11 32758701 32758828 -89085028 + MLT1A0 LTR MaLR 243 363 -2 5 834 395 359 0 14 chr11 32759045 32759192 -89084664 + MIRb SINE MIR 52 196 -72 5 834 543 316 59 25 chr11 32759607 32759844 -89084012 - MLT1L LTR MaLR -70 540 296 5 834 1498 225 43 75 chr11 32759947 32760346 -89083510 + MTD LTR MaLR 3 388 -31 5 834 1105 37 0 35 chr11 32760705 32760846 -89083010 + B1_Mus1 SINE Alu 13 148 0 5 834 300 81 0 0 chr11 32760851 32760888 -89082968 + HAL1-3A_ME LINE L1 1975 2011 -847 5 834 435 193 0 0 chr11 32760889 32760977 -89082879 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 834 279 0 0 0 chr11 32760977 32761008 -89082848 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 834 204 301 113 17 chr11 32761445 32761560 -89082296 + MIRm SINE MIR 16 141 -135 5 834 186 273 76 43 chr11 32761806 32761898 -89081958 - MIRb SINE MIR -127 141 47 5 834 432 269 96 88 chr11 32763123 32763363 -89080493 - ORR1E LTR MaLR -63 296 55 5 834 203 88 29 0 chr11 32763967 32764001 -89079855 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 834 574 180 9 47 chr11 32764029 32764483 -89079373 + (TG)n Simple_repeat Simple_repeat 1 436 0 5 834 856 248 90 76 chr11 32764487 32764775 -89079081 - B4A SINE B4 0 292 1 5 834 316 265 64 57 chr11 32765499 32765639 -89078217 - MLT1A1 LTR MaLR 0 408 268 5 834 297 123 12 47 chr11 32766268 32766353 -89077503 + A-rich Low_complexity Low_complexity 5 86 0 5 834 625 286 101 22 chr11 32766449 32766717 -89077139 - MER121 Unknown Unknown -100 312 24 5 834 284 383 23 42 chr11 32767016 32767280 -89076576 + L2c LINE L2 3129 3387 0 5 835 235 325 67 43 chr11 32768994 32769158 -89074698 - MIRc SINE MIR -99 169 2 5 835 501 226 128 28 chr11 32769254 32769395 -89074461 + Charlie13a DNA Charlie 80 234 -1280 5 835 306 322 115 26 chr11 32770009 32770165 -89073691 + Charlie13a DNA Charlie 982 1151 -363 5 835 1370 11 11 22 chr11 32770368 32770550 -89073306 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 5 835 822 146 36 8 chr11 32770553 32770801 -89073055 + CT-rich Low_complexity Low_complexity 1 254 0 5 835 190 220 77 39 chr11 32771801 32771853 -89072003 + L3 LINE CR1 4117 4170 -319 5 835 431 235 153 0 chr11 32772127 32772225 -89071631 - PB1D9 SINE Alu -5 115 3 5 835 887 216 81 15 chr11 32772602 32772634 -89071222 - B3 SINE B2 -4 212 167 5 835 432 0 0 0 chr11 32772634 32772682 -89071174 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 835 333 0 0 0 chr11 32772682 32772718 -89071138 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 835 887 216 81 15 chr11 32772718 32772881 -89070975 - B3 SINE B2 -50 166 4 5 835 333 0 0 0 chr11 32773068 32773105 -89070751 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 835 227 294 10 10 chr11 32773118 32773221 -89070635 - L1MC4 LINE L1 -199 7843 7741 5 835 814 246 0 58 chr11 32773232 32773439 -89070417 - B3A SINE B2 -3 195 1 5 835 686 166 6 0 chr11 32773613 32773788 -89070068 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 835 273 207 0 0 chr11 32773805 32773887 -89069969 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 835 321 326 88 7 chr11 32774248 32774396 -89069460 - L1MC4 LINE L1 -640 7402 7243 5 835 1009 153 26 42 chr11 32774520 32774711 -89069145 + B2_Mm2 SINE B2 1 188 -7 5 835 315 185 0 0 chr11 32774774 32774828 -89069028 + B1_Mur2 SINE Alu 40 93 -56 5 835 271 221 143 0 chr11 32774928 32775005 -89068851 - MYSERV-int LTR ERVK -984 5566 5479 5 835 591 274 97 35 chr11 32775002 32775229 -89068627 - MYSERV-int LTR ERVK -1943 4607 4367 5 835 352 360 39 0 chr11 32775276 32775454 -89068402 - BGLII_A LTR ERVK -27 418 234 5 835 584 236 197 11 chr11 32775508 32775696 -89068160 - ID_B1 SINE B4 0 224 2 5 835 228 293 0 79 chr11 32775886 32775949 -89067907 - B1F2 SINE Alu -53 96 39 5 835 455 245 109 12 chr11 32776311 32776338 -89067518 - ID_B1 SINE B4 -2 222 155 5 835 325 270 70 0 chr11 32776338 32776438 -89067418 - B1_Mus1 SINE Alu -41 107 1 5 835 455 245 109 12 chr11 32776438 32776479 -89067377 - ID_B1 SINE B4 -2 154 43 5 835 327 259 123 8 chr11 32776604 32776785 -89067071 - L1MEb LINE L1 -3234 3303 3107 5 835 1121 86 0 0 chr11 32776970 32777109 -89066747 + B1_Mus2 SINE Alu 1 139 -8 5 835 236 274 127 47 chr11 32777125 32777164 -89066692 - L1MEb LINE L1 -3699 2838 2803 5 835 607 254 22 7 chr11 32777164 32777303 -89066553 - B1_Mur4 SINE Alu -9 141 1 5 835 236 274 127 47 chr11 32777303 32777539 -89066317 - L1MEb LINE L1 -3735 2802 2541 5 835 2256 72 0 3 chr11 32777540 32777831 -89066025 + ORR1A3 LTR MaLR 1 290 -36 5 835 1229 180 69 78 chr11 32777839 32778200 -89065656 + RMER17B LTR ERVK 2 359 -599 5 835 288 242 147 29 chr11 32778195 32778297 -89065559 + RMER13B LTR ERVK 786 899 -9 5 835 347 58 2 0 chr11 32778304 32778351 -89065505 + ORR1A3 LTR MaLR 285 367 0 5 835 419 265 46 114 chr11 32778351 32778594 -89065262 - L1MEb LINE L1 -4089 2544 2307 5 835 251 305 14 72 chr11 32778657 32778795 -89065061 - L1MEb LINE L1 -4500 2133 2004 5 835 695 208 75 69 chr11 32778889 32779049 -89064807 - RSINE1 SINE B4 -2 163 3 5 835 659 270 70 5 chr11 32779078 32779279 -89064577 - B3 SINE B2 -1 215 2 5 835 34 0 0 0 chr11 32779295 32779329 -89064527 + AT_rich Low_complexity Low_complexity 1 34 0 5 835 368 333 40 13 chr11 32779379 32779604 -89064252 - L1MEb LINE L1 -4764 1869 1639 5 835 446 304 76 47 chr11 32779696 32780144 -89063712 - L1MEb LINE L1 -5107 1420 960 5 835 320 243 253 6 chr11 32782003 32782181 -89061675 + Lx9 LINE L1 7384 7605 -39 5 835 367 312 37 0 chr11 32782277 32782386 -89061470 + PB1D9 SINE Alu 1 113 -7 5 835 902 226 9 80 chr11 32782391 32782603 -89061253 + B3 SINE B2 4 200 -16 5 835 270 209 54 71 chr11 32782777 32782940 -89060916 + MIRb SINE MIR 36 189 -19 5 835 684 0 0 0 chr11 32783336 32783412 -89060444 + (TCC)n Simple_repeat Simple_repeat 2 77 0 5 835 1113 251 14 32 chr11 32784080 32784360 -89059496 - B4A SINE B4 -17 275 1 5 835 801 186 42 14 chr11 32784384 32784526 -89059330 + B1_Mus2 SINE Alu 2 147 0 5 835 25 31 0 0 chr11 32784535 32784567 -89059289 + AT_rich Low_complexity Low_complexity 1 32 0 5 835 1095 188 18 26 chr11 32784619 32784848 -89059008 - RLTR16 LTR ERVK -22 483 257 5 835 1886 177 160 20 chr11 32784848 32785291 -89058565 + RLTR16 LTR ERVK 1 505 0 6 835 462 280 8 8 chr11 32785292 32785411 -89058445 - B3A SINE B2 -75 123 5 6 835 331 287 96 0 chr11 32785956 32786071 -89057785 + ID_B1 SINE B4 99 224 0 6 835 299 182 28 70 chr11 32786120 32786191 -89057665 + ID4 SINE ID 3 70 -13 6 835 4011 53 0 0 chr11 32786341 32786816 -89057040 + MT2C_Mm LTR ERVL 1 475 0 6 835 324 297 16 71 chr11 32786862 32786989 -89056867 - MLT1C LTR MaLR -12 455 336 6 835 185 224 17 0 chr11 32787010 32787068 -89056788 + CT-rich Low_complexity Low_complexity 3 61 0 6 835 860 209 58 16 chr11 32787107 32787297 -89056559 - B3A SINE B2 0 198 1 6 835 765 231 12 36 chr11 32787539 32787705 -89056151 - RSINE1 SINE B4 0 165 4 6 835 305 336 36 22 chr11 32787755 32787892 -89055964 - L1M5 LINE L1 -616 5546 5408 6 835 332 330 44 44 chr11 32788011 32788192 -89055664 - L1M5 LINE L1 -881 5265 5085 6 835 1026 58 0 0 chr11 32788199 32788337 -89055519 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 6 835 225 154 0 0 chr11 32788431 32788470 -89055386 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 835 667 266 192 21 chr11 32788532 32788766 -89055090 - B4A SINE B4 -18 274 1 6 835 3014 100 24 40 chr11 32788793 32789262 -89054594 - RMER6B LTR ERVK 0 461 1 6 835 234 331 143 40 chr11 32790195 32790321 -89053535 - MLT1H LTR MaLR 0 549 411 6 835 228 272 145 18 chr11 32790497 32790611 -89053245 + MIRc SINE MIR 15 141 -127 6 835 298 246 62 116 chr11 32791090 32791219 -89052637 + MLT1J LTR MaLR 5 126 -386 6 835 370 205 12 36 chr11 32792925 32793018 -89050838 - B1F2 SINE Alu -22 127 37 6 835 1298 174 9 26 chr11 32793396 32793626 -89050230 - URR1A DNA MER1_type 0 226 1 6 835 1329 81 42 31 chr11 32794376 32794568 -89049288 + B2_Mm2 SINE B2 2 195 0 6 835 238 43 87 0 chr11 32795038 32795084 -89048772 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 6 835 342 321 11 86 chr11 32795133 32795307 -89048549 + Charlie4z DNA MER1_type 7 167 0 6 835 493 290 113 9 chr11 32795626 32795838 -89048018 + Charlie5 DNA MER1_type 2391 2624 0 6 835 240 226 0 0 chr11 32795893 32795955 -89047901 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 835 390 42 0 0 chr11 32796072 32796120 -89047736 + (GGA)n Simple_repeat Simple_repeat 1 48 0 6 835 737 300 88 0 chr11 32796498 32796725 -89047131 - Tigger5 DNA MER2_type -24 2382 2136 6 835 3436 35 5 0 chr11 32796899 32797293 -89046563 - MTA_Mm LTR MaLR 0 396 1 6 835 438 53 0 0 chr11 32797736 32797793 -89046063 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 835 533 324 87 0 chr11 32799222 32799441 -89044415 - MER121 Unknown Unknown -112 300 63 6 835 426 39 0 0 chr11 32800257 32800309 -89043547 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 835 186 319 43 14 chr11 32800945 32801015 -89042841 - L2b LINE L2 -34 3341 3270 6 835 570 293 144 0 chr11 32801852 32802026 -89041830 + MER20 DNA MER1_type 2 200 -19 6 835 206 105 26 0 chr11 32802595 32802633 -89041223 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 835 333 0 0 0 chr11 32802643 32802680 -89041176 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 835 308 276 0 13 chr11 32802709 32802786 -89041070 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 835 180 182 0 0 chr11 32803284 32803328 -89040528 + G-rich Low_complexity Low_complexity 1 44 0 6 835 231 333 0 54 chr11 32803678 32803789 -89040067 + MIR3 SINE MIR 60 164 -44 6 835 191 250 83 48 chr11 32804436 32804520 -89039336 + MIRb SINE MIR 103 189 -79 6 835 1452 258 46 22 chr11 32804580 32804949 -89038907 - MTE2a LTR MaLR 0 379 2 6 835 520 148 44 0 chr11 32805219 32805354 -89038502 + (TCTA)n Simple_repeat Simple_repeat 2 142 0 6 835 708 237 7 0 chr11 32805372 32805511 -89038345 - RSINE1 SINE B4 -20 145 6 6 835 226 266 92 15 chr11 32805783 32805848 -89038008 - L4 LINE RTE -209 1820 1751 6 835 427 333 56 7 chr11 32806620 32806762 -89037094 + MER45A DNA Tip100 29 177 -1 6 835 218 154 0 49 chr11 32807465 32807506 -89036350 + polypyrimidine Low_complexity Low_complexity 5 43 0 6 835 234 233 67 83 chr11 32807514 32807610 -89036246 - PB1D10 SINE Alu -14 103 11 6 835 246 208 64 13 chr11 32809093 32809171 -89034685 + MER121 Unknown Unknown 116 197 -215 6 835 243 0 0 0 chr11 32809258 32809285 -89034571 + (T)n Simple_repeat Simple_repeat 1 27 0 6 835 1178 37 0 0 chr11 32809456 32809592 -89034264 - B1_Mus2 SINE Alu -10 137 2 6 835 602 164 8 0 chr11 32811464 32811586 -89032270 + GA-rich Low_complexity Low_complexity 4 126 0 6 835 361 370 86 39 chr11 32811819 32812250 -89031606 + MLT1K LTR MaLR 126 576 -19 6 835 274 349 35 45 chr11 32812778 32812979 -89030877 + MIR SINE MIR 57 255 -7 6 835 207 114 0 0 chr11 32813669 32813704 -89030152 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 6 835 258 247 100 11 chr11 32813704 32813794 -89030062 + MIR3 SINE MIR 85 182 -26 6 835 232 277 0 0 chr11 32814699 32814746 -89029110 + L3b LINE CR1 402 448 -34 6 835 429 325 163 17 chr11 32814980 32815280 -89028576 + MLT1C LTR MaLR 46 389 -78 6 835 799 305 83 18 chr11 32815424 32815811 -89028045 + MLT1F2 LTR MaLR 142 553 -7 6 835 2190 178 15 15 chr11 32815954 32816348 -89027508 - ORR1B1 LTR MaLR 0 394 1 6 835 416 273 159 0 chr11 32816354 32816486 -89027370 - RSINE1 SINE B4 -9 156 4 6 835 251 318 153 9 chr11 32816523 32816634 -89027222 + MER20 DNA MER1_type 1 127 -92 6 835 393 346 65 28 chr11 32817123 32817370 -89026486 - LTR33A LTR ERVL -5 515 260 6 835 267 235 29 0 chr11 32818908 32818976 -89024880 - BC1_Mm scRNA scRNA -81 71 2 6 835 207 0 0 0 chr11 32819413 32819436 -89024420 + (TTTTTA)n Simple_repeat Simple_repeat 6 28 0 6 835 318 244 0 82 chr11 32819587 32819672 -89024184 - MLT1J2 LTR MaLR 0 448 371 6 835 380 284 19 7 chr11 32819987 32820152 -89023704 - MIRc SINE MIR -92 176 3 6 835 1619 315 76 10 chr11 32820394 32821161 -89022695 - Lx8 LINE L1 -73 7400 6584 6 835 349 169 193 0 chr11 32821826 32821909 -89021947 - MIR SINE MIR -87 175 77 6 835 355 334 221 24 chr11 32822609 32822949 -89020907 - MER21B LTR ERV1 -338 525 119 6 835 707 180 120 17 chr11 32823388 32823563 -89020293 + Lx4B LINE L1 6866 7058 0 6 835 207 0 0 0 chr11 32823692 32823715 -89020141 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 6 835 217 239 0 0 chr11 32823865 32823911 -89019945 - RSINE1 SINE B4 -117 48 3 6 835 397 308 100 6 chr11 32824006 32824176 -89019680 - L1ME4a LINE L1 -6 6118 5933 6 835 261 299 209 39 chr11 32824668 32824950 -89018906 + Lx9 LINE L1 7300 7629 -15 6 835 203 337 23 23 chr11 32825257 32825345 -89018511 - MIRc SINE MIR -133 135 48 6 835 387 0 0 0 chr11 32826844 32826887 -89016969 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 835 736 194 47 0 chr11 32826891 32827020 -89016836 - RSINE1 SINE B4 -28 137 3 6 835 455 293 165 8 chr11 32827080 32827328 -89016528 + L1MD LINE L1 5492 5778 -464 6 835 1151 267 100 34 chr11 32827442 32827490 -89016366 - MTD LTR MaLR -14 405 364 6 835 2357 121 41 11 chr11 32827490 32827857 -89015999 - ORR1C1 LTR MaLR 0 378 1 6 835 1151 267 100 34 chr11 32827857 32828188 -89015668 - MTD LTR MaLR -56 363 1 6 835 238 318 38 15 chr11 32828406 32828537 -89015319 + L1MC3 LINE L1 7256 7389 -396 6 835 225 333 141 20 chr11 32828566 32828814 -89015042 + L1MC3 LINE L1 7478 7755 -30 6 835 394 312 59 68 chr11 32828826 32829063 -89014793 + MIRb SINE MIR 18 252 -16 6 835 197 65 0 31 chr11 32829152 32829184 -89014672 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 835 225 83 0 0 chr11 32830206 32830242 -89013614 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 835 210 37 0 0 chr11 32831050 32831077 -89012779 + (CGGGGG)n Simple_repeat Simple_repeat 2 28 0 6 835 237 196 0 0 chr11 32831474 32831525 -89012331 + A-rich Low_complexity Low_complexity 1 51 0 6 835 264 59 0 0 chr11 32831567 32831601 -89012255 + (A)n Simple_repeat Simple_repeat 1 34 0 6 835 381 312 123 17 chr11 32831785 32832020 -89011836 + L4 LINE RTE 1742 2001 -28 6 835 292 296 111 10 chr11 32832790 32832889 -89010967 + MTEb LTR MaLR 1 109 -250 6 835 315 266 39 10 chr11 32833063 32833167 -89010689 + MTEb LTR MaLR 265 378 0 6 835 277 329 0 12 chr11 32833339 32833419 -89010437 + Arthur1A DNA Tip100 3 81 -96 6 835 1093 65 58 0 chr11 32833746 32833885 -89009971 + B1_Mm SINE Alu 1 147 0 6 835 216 0 0 0 chr11 32833895 32833919 -89009937 + (A)n Simple_repeat Simple_repeat 1 24 0 6 835 283 303 163 0 chr11 32833978 32834199 -89009657 + L1MEg LINE L1 490 746 -5338 6 835 234 230 101 63 chr11 32834199 32834278 -89009578 + RSINE1 SINE B4 3 84 -81 6 835 247 323 52 52 chr11 32834335 32834642 -89009214 + L1MEg LINE L1 734 1040 -5044 6 835 180 0 0 0 chr11 32835531 32835551 -89008305 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 835 253 217 12 12 chr11 32836098 32836182 -89007674 + CT-rich Low_complexity Low_complexity 2 85 0 6 835 883 131 64 21 chr11 32836265 32836406 -89007450 + B1_Mur4 SINE Alu 3 149 -1 6 835 1526 0 0 6 chr11 32836427 32836602 -89007254 + (GGGAA)n Simple_repeat Simple_repeat 3 176 0 6 835 1241 80 6 0 chr11 32836618 32836793 -89007063 + (GAGAA)n Simple_repeat Simple_repeat 4 179 0 6 835 320 0 0 24 chr11 32837773 32837814 -89006042 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 835 462 256 119 30 chr11 32837923 32838124 -89005732 + LTR84a LTR ERVL 508 726 -31 6 835 255 176 54 21 chr11 32838151 32838190 -89005666 + (TATAA)n Simple_repeat Simple_repeat 2 42 0 6 835 1238 36 0 0 chr11 32838190 32838330 -89005526 + B1_Mm SINE Alu 1 140 -7 6 835 255 176 54 21 chr11 32838330 32838383 -89005473 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 7 835 414 217 130 0 chr11 32838418 32838510 -89005346 - MER117 DNA MER1_type -49 148 45 7 835 464 175 10 0 chr11 32838867 32838964 -89004892 + C-rich Low_complexity Low_complexity 1 98 0 7 835 240 59 0 0 chr11 32839350 32839384 -89004472 + (ATAGG)n Simple_repeat Simple_repeat 1 34 0 7 835 1214 241 56 89 chr11 32839605 32839696 -89004160 + MTE2b LTR MaLR 1 88 -291 7 835 692 259 69 10 chr11 32839696 32839899 -89003957 - B3 SINE B2 0 216 2 7 835 1214 241 56 89 chr11 32839899 32840199 -89003657 + MTE2b LTR MaLR 89 379 0 7 835 280 311 28 19 chr11 32840404 32840512 -89003344 - MIRb SINE MIR -121 147 39 7 835 198 0 0 0 chr11 32841055 32841077 -89002779 + (C)n Simple_repeat Simple_repeat 1 22 0 7 835 839 296 24 0 chr11 32841224 32841437 -89002419 + MER58A DNA MER1_type 7 224 0 7 835 182 357 0 0 chr11 32841452 32841522 -89002334 + MIRb SINE MIR 193 262 -6 7 835 190 222 39 126 chr11 32841674 32841777 -89002079 + L2c LINE L2 3293 3386 -1 7 835 340 341 174 5 chr11 32842561 32842779 -89001077 + MER2 DNA MER2_type 1 255 -90 7 835 222 254 134 8 chr11 32843449 32843582 -89000274 - MIRb SINE MIR -66 202 44 7 835 194 0 39 0 chr11 32843822 32843848 -89000008 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 7 835 301 327 18 35 chr11 32843947 32844118 -88999738 + CT-rich Low_complexity Low_complexity 4 171 0 7 835 180 0 0 0 chr11 32844221 32844241 -88999615 + (TCTCTG)n Simple_repeat Simple_repeat 4 23 0 7 835 890 134 0 22 chr11 32844401 32844584 -88999272 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 835 948 324 61 47 chr11 32845426 32845898 -88997958 + MT2A LTR ERVL 1 479 -54 7 835 263 300 48 48 chr11 32847505 32847610 -88996246 - MIR SINE MIR -47 215 111 7 835 225 0 0 0 chr11 32848106 32848131 -88995725 + (A)n Simple_repeat Simple_repeat 1 25 0 7 835 259 291 75 20 chr11 32848568 32848700 -88995156 - MIRb SINE MIR -20 248 101 7 835 596 193 46 0 chr11 32850502 32850611 -88993245 + PB1D9 SINE Alu 1 114 -6 7 835 180 0 0 0 chr11 32850795 32850815 -88993041 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 7 835 324 268 8 82 chr11 32850828 32850950 -88992906 + MIRc SINE MIR 41 153 -115 7 835 4210 132 29 15 chr11 32850950 32851635 -88992221 + Lx2B LINE L1 6306 7000 0 7 835 1259 245 51 51 chr11 32852200 32852574 -88991282 - MTE2b LTR MaLR -4 375 2 7 835 361 300 72 9 chr11 32853368 32853479 -88990377 - MIRc SINE MIR -67 201 84 7 835 400 143 50 130 chr11 32853996 32854157 -88989699 - MER33 DNA MER1_type -25 299 152 7 835 623 142 9 0 chr11 32854167 32854183 -88989673 + polypyrimidine Low_complexity Low_complexity 101 116 0 7 835 1287 84 0 0 chr11 32854183 32854361 -88989495 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 7 835 623 142 9 0 chr11 32854361 32854457 -88989399 + CT-rich Low_complexity Low_complexity 4 100 0 7 835 237 217 43 0 chr11 32854487 32854533 -88989323 - MER33 DNA MER1_type -269 55 8 7 835 351 0 0 0 chr11 32854612 32854651 -88989205 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 835 990 238 15 0 chr11 32854736 32854942 -88988914 + B3 SINE B2 1 209 -7 7 835 1401 283 39 57 chr11 32855075 32855513 -88988343 + MMAR1 DNA Mariner 325 754 -532 7 835 257 293 0 0 chr11 32855517 32855592 -88988264 - L1_Rod LINE L1 -209 5638 5564 7 835 683 287 92 5 chr11 32855643 32855803 -88988053 + ORR1D1 LTR MaLR 1 177 -197 7 835 597 72 0 0 chr11 32855803 32855886 -88987970 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 835 683 290 96 19 chr11 32855886 32855962 -88987894 + ORR1D1 LTR MaLR 131 235 -139 7 835 368 257 239 0 chr11 32856192 32856305 -88987551 + B1F2 SINE Alu 10 149 0 7 835 231 114 0 0 chr11 32856599 32856634 -88987222 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 7 835 287 239 252 18 chr11 32856856 32856967 -88986889 - MIRb SINE MIR -115 153 17 7 835 440 35 17 0 chr11 32857487 32857545 -88986311 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 835 232 300 0 0 chr11 32857603 32857663 -88986193 + MIRc SINE MIR 98 157 -111 7 835 336 24 0 0 chr11 32859040 32859081 -88984775 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 835 702 35 0 0 chr11 32859916 32860001 -88983855 + (TC)n Simple_repeat Simple_repeat 2 86 0 7 835 995 144 77 11 chr11 32860039 32860222 -88983634 - B2_Mm2 SINE B2 0 195 1 7 835 344 293 146 122 chr11 32860363 32860658 -88983198 + ORR1E LTR MaLR 56 357 -2 7 835 550 364 33 30 chr11 32861330 32861630 -88982226 - MER2 DNA MER2_type -15 330 30 7 835 446 272 21 52 chr11 32861716 32861876 -88981980 - B3A SINE B2 0 216 57 7 835 378 0 0 0 chr11 32863232 32863274 -88980582 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 835 311 325 18 0 chr11 32864420 32864534 -88979322 + (TCCA)n Simple_repeat Simple_repeat 2 117 0 7 835 393 22 0 0 chr11 32864781 32864827 -88979029 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 835 1239 72 0 0 chr11 32864827 32865007 -88978849 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 835 235 235 12 36 chr11 32865050 32865134 -88978722 + (CATA)n Simple_repeat Simple_repeat 1 82 0 7 835 360 0 0 0 chr11 32865257 32865297 -88978559 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 835 327 291 24 37 chr11 32866028 32866155 -88977701 + (TCCA)n Simple_repeat Simple_repeat 1 125 0 7 835 324 103 0 0 chr11 32866155 32866213 -88977643 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 835 327 291 24 37 chr11 32866213 32866249 -88977607 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 7 835 187 298 73 55 chr11 32866366 32866476 -88977380 + MIR SINE MIR 23 134 -128 7 835 320 256 173 30 chr11 32866586 32866719 -88977137 - Tigger7 DNA MER2_type -32 2459 2308 7 835 392 252 74 9 chr11 32866720 32866828 -88977028 - Tigger7 DNA MER2_type -2370 121 7 7 835 253 333 103 43 chr11 32866845 32867077 -88976779 + LTR16C LTR ERVL 229 474 -15 7 835 1732 179 127 14 chr11 32867559 32867905 -88975951 + MTC LTR MaLR 15 399 -22 7 835 205 259 82 47 chr11 32868102 32868187 -88975669 - L2c LINE L2 -21 3366 3279 7 835 861 259 65 0 chr11 32868623 32868824 -88975032 + MLT1D LTR MaLR 290 503 -2 7 835 397 337 11 11 chr11 32868921 32869151 -88974705 + (TGG)n Simple_repeat Simple_repeat 1 230 0 7 835 336 347 39 44 chr11 32869181 32869362 -88974494 - HAL1-2a_MD LINE L1 -518 2506 2327 7 835 363 356 6 6 chr11 32869372 32869547 -88974309 + (TGG)n Simple_repeat Simple_repeat 2 176 0 7 835 368 286 6 68 chr11 32869464 32869640 -88974216 + (ATGGTG)n Simple_repeat Simple_repeat 4 168 0 7 835 776 30 10 0 chr11 32870630 32870729 -88973127 + (CTGGGG)n Simple_repeat Simple_repeat 3 102 0 7 835 184 255 164 19 chr11 32870731 32870835 -88973021 + MIRb SINE MIR 23 141 -127 7 835 234 0 0 0 chr11 32870850 32870876 -88972980 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 835 3464 71 2 2 chr11 32870881 32871321 -88972535 - L1_Mus2 LINE L1 -11 6555 6116 7 835 271 314 97 0 chr11 32872909 32873033 -88970823 - MER31B LTR ERV1 -23 443 308 7 835 268 189 75 0 chr11 32873162 32873215 -88970641 - MER31A LTR ERV1 -392 93 37 7 835 292 236 157 30 chr11 32873330 32873472 -88970384 - MIR SINE MIR -98 178 17 7 835 183 263 39 136 chr11 32874209 32874363 -88969493 + MIRm SINE MIR 20 158 -118 7 835 228 316 28 76 chr11 32874520 32874664 -88969192 + MIR3 SINE MIR 5 141 -67 7 835 927 122 15 0 chr11 32874701 32874832 -88969024 + B1_Mus1 SINE Alu 2 134 -14 7 835 513 0 0 0 chr11 32874832 32874889 -88968967 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 7 835 207 0 0 0 chr11 32874890 32874913 -88968943 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 7 835 466 308 111 60 chr11 32875720 32875787 -88968069 - MLT1B LTR MaLR 0 390 321 7 835 189 0 0 0 chr11 32875787 32875808 -88968048 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7 835 466 308 111 60 chr11 32875808 32876110 -88967746 - MLT1B LTR MaLR -70 320 3 7 835 556 150 18 0 chr11 32876153 32876266 -88967590 + (TAGA)n Simple_repeat Simple_repeat 1 115 0 7 835 201 318 153 38 chr11 32876294 32876451 -88967405 + MIR SINE MIR 81 255 -7 7 835 469 282 121 31 chr11 32877302 32877525 -88966331 + MLT1D LTR MaLR 263 505 0 7 835 209 188 12 36 chr11 32877609 32877692 -88966164 + CT-rich Low_complexity Low_complexity 2 82 0 7 835 2527 74 3 58 chr11 32878624 32878970 -88964886 - ORR1A2 LTR MaLR 0 327 1 7 835 198 354 70 10 chr11 32879138 32879238 -88964618 + L4 LINE RTE 1705 1810 -219 7 835 747 209 122 30 chr11 32879720 32879917 -88963939 + B3 SINE B2 1 215 -1 7 835 736 279 27 0 chr11 32879923 32880106 -88963750 - B3A SINE B2 -9 189 2 7 835 523 297 13 13 chr11 32880254 32880411 -88963445 + Tigger5 DNA MER2_type 2164 2320 -86 7 835 216 130 0 0 chr11 32880683 32880729 -88963127 + (A)n Simple_repeat Simple_repeat 1 46 0 7 835 2514 120 50 66 chr11 32880894 32881331 -88962525 - RLTR23 LTR ERV1 0 430 1 7 835 207 260 167 88 chr11 32881781 32881895 -88961961 - MIRb SINE MIR -14 254 132 7 835 206 367 75 44 chr11 32881928 32882156 -88961700 - L2b LINE L2 -38 3337 3103 7 835 324 0 0 0 chr11 32882674 32882710 -88961146 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 835 493 184 48 0 chr11 32882959 32883084 -88960772 - Lx9 LINE L1 -1 7643 7513 7 835 599 240 0 76 chr11 32883144 32883302 -88960554 - Lx9 LINE L1 -318 7326 7181 7 835 231 303 32 19 chr11 32883676 32883831 -88960025 + L1ME3B LINE L1 5272 5428 -745 7 835 357 324 87 7 chr11 32883980 32884129 -88959727 + L1ME3B LINE L1 5731 5891 -349 7 835 258 200 0 0 chr11 32884210 32884220 -88959636 + (TA)n Simple_repeat Simple_repeat 1 10 0 7 835 315 0 0 0 chr11 32884220 32884255 -88959601 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 835 258 200 0 0 chr11 32884255 32884309 -88959547 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 835 234 0 0 0 chr11 32884329 32884355 -88959501 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 835 1035 152 0 0 chr11 32885429 32885607 -88958249 + CT-rich Low_complexity Low_complexity 3 180 0 8 835 1217 126 15 25 chr11 32885631 32885664 -88958192 - B2_Mm2 SINE B2 0 195 167 8 835 648 134 97 69 chr11 32885664 32885808 -88958048 - B1_Mus1 SINE Alu 0 148 1 8 835 1217 126 15 25 chr11 32885808 32885970 -88957886 - B2_Mm2 SINE B2 -29 166 2 8 835 660 301 21 0 chr11 32885993 32886186 -88957670 - B3A SINE B2 0 198 2 8 835 396 59 0 0 chr11 32886251 32886302 -88957554 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 835 396 0 0 0 chr11 32886302 32886345 -88957511 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 835 2648 103 50 68 chr11 32886499 32886937 -88956919 - RLTR23 LTR ERV1 0 430 1 8 835 3646 10 2 0 chr11 32887332 32887727 -88956129 + MTA_Mm LTR MaLR 1 396 0 8 835 616 248 0 0 chr11 32887786 32887907 -88955949 - ID_B1 SINE B4 -1 223 103 8 835 332 307 72 14 chr11 32887907 32887925 -88955931 - B1_Mus1 SINE Alu -1 147 1 8 835 235 293 0 0 chr11 32887967 32888042 -88955814 + MER97b DNA MER1_type? 943 1017 -36 8 835 233 261 0 11 chr11 32888649 32888738 -88955118 + GA-rich Low_complexity Low_complexity 2 89 0 8 835 261 327 56 0 chr11 32889907 32890014 -88953842 - L2b LINE L2 -225 3150 3038 8 835 265 304 29 19 chr11 32890739 32890843 -88953013 - L1M5 LINE L1 -341 5899 5795 8 835 186 43 0 0 chr11 32891787 32891810 -88952046 + (TGGGGG)n Simple_repeat Simple_repeat 6 28 0 8 835 299 188 31 0 chr11 32892159 32892223 -88951633 + L1M6 LINE L1 2388 2453 -4043 8 835 230 299 55 27 chr11 32893163 32893273 -88950583 - MER5A DNA MER1_type -41 148 36 8 835 218 333 27 0 chr11 32893718 32893793 -88950063 - MIR SINE MIR -177 85 9 8 835 1252 120 130 0 chr11 32893807 32894007 -88949849 - URR1A DNA MER1_type 0 226 1 8 835 294 29 0 0 chr11 32894366 32894401 -88949455 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 835 241 286 76 0 chr11 32895583 32895688 -88948168 + L1MC LINE L1 5689 5801 -2081 8 835 762 105 0 0 chr11 32895705 32895819 -88948037 + (TGGA)n Simple_repeat Simple_repeat 3 116 0 8 835 614 277 42 18 chr11 32896039 32896173 -88947683 + L1M2 LINE L1 4724 4856 -1287 8 835 669 25 0 0 chr11 32896173 32896252 -88947604 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 8 835 614 277 42 18 chr11 32896252 32896334 -88947522 + L1M2 LINE L1 4857 4944 -1199 8 835 681 13 0 0 chr11 32896336 32896414 -88947442 + (TTC)n Simple_repeat Simple_repeat 3 80 0 8 835 1046 109 0 0 chr11 32896427 32896574 -88947282 - B2_Mm2 SINE B2 -47 148 2 8 835 188 204 0 120 chr11 32898423 32898473 -88945383 + L2c LINE L2 3344 3387 0 8 835 196 340 85 0 chr11 32898785 32898879 -88944977 + L2b LINE L2 3253 3354 -21 8 836 241 254 14 56 chr11 32901129 32901200 -88942656 - MIR SINE MIR -114 148 81 8 836 309 374 81 0 chr11 32901269 32901392 -88942464 - L2b LINE L2 -5 3370 3238 8 836 1149 139 123 10 chr11 32901456 32901659 -88942197 + URR1A DNA MER1_type 1 226 0 8 836 1725 169 130 3 chr11 32902221 32902560 -88941296 - RLTR14 LTR ERV1 0 382 1 8 836 256 236 19 17 chr11 32902844 32902919 -88940937 + MIRc SINE MIR 56 131 -145 8 836 469 214 435 28 chr11 32902948 32903195 -88940661 - ORR1D1 LTR MaLR 0 359 13 8 836 265 62 0 40 chr11 32903195 32903245 -88940611 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 8 836 470 116 0 0 chr11 32903248 32903317 -88940539 - B1_Mus2 SINE Alu -2 145 77 8 836 410 41 0 0 chr11 32903317 32903366 -88940490 + RLTR10C LTR ERVK 1 49 -387 8 836 1007 265 95 15 chr11 32903408 32903672 -88940184 + B4 SINE B4 1 285 -7 8 836 291 222 62 0 chr11 32903683 32903764 -88940092 + (CATA)n Simple_repeat Simple_repeat 3 88 0 8 836 270 306 36 104 chr11 32903827 32904020 -88939836 + MTE2a LTR MaLR 186 365 -14 8 836 1220 41 0 20 chr11 32904281 32904431 -88939425 + B1_Mm SINE Alu 1 147 0 8 836 320 216 111 88 chr11 32904533 32904675 -88939181 - MIRb SINE MIR -117 151 1 8 836 204 40 0 0 chr11 32905636 32905661 -88938195 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 836 915 100 13 7 chr11 32906155 32906306 -88937550 + (TTC)n Simple_repeat Simple_repeat 2 153 0 8 836 1481 272 38 58 chr11 32906630 32907079 -88936777 + MMAR1 DNA Mariner 325 764 -522 8 836 286 319 0 0 chr11 32907079 32907148 -88936708 - Lx7 LINE L1 -2031 5665 5597 8 836 293 292 135 0 chr11 32907199 32907288 -88936568 + ORR1D1 LTR MaLR 1 101 -273 8 836 995 115 6 0 chr11 32908503 32908660 -88935196 + (TC)n Simple_repeat Simple_repeat 2 159 0 8 836 236 300 100 0 chr11 32909163 32909273 -88934583 + ORR1E LTR MaLR 1 121 -238 8 836 184 371 86 31 chr11 32909530 32909658 -88934198 + MIRb SINE MIR 73 207 -61 8 836 1468 219 57 45 chr11 32909663 32909752 -88934104 - ORR1E LTR MaLR -2 357 272 8 836 1424 140 9 0 chr11 32909752 32909974 -88933882 + URR1B DNA MER1_type 2 225 0 8 836 1468 219 57 45 chr11 32909974 32910237 -88933619 - ORR1E LTR MaLR -88 271 1 8 836 1230 54 0 0 chr11 32911165 32911312 -88932544 - B1_Mus1 SINE Alu 0 148 2 8 836 245 266 158 89 chr11 32911617 32911807 -88932049 - MLT1H LTR MaLR -162 203 1 8 836 339 352 43 19 chr11 32911807 32911953 -88931903 - MLT1H LTR MaLR -349 200 51 8 836 823 228 80 15 chr11 32911996 32912196 -88931660 + B3 SINE B2 1 213 -3 8 836 704 275 161 48 chr11 32912371 32912707 -88931149 + MTEa LTR MaLR 2 375 -4 8 836 248 266 190 3 chr11 32913643 32913824 -88930032 - MIR3 SINE MIR -2 206 1 8 836 377 298 45 8 chr11 32914470 32914602 -88929254 + MIR SINE MIR 31 167 -95 8 836 239 225 51 142 chr11 32914843 32915040 -88928816 + RLTR40 LTR ERVK 563 741 -76 8 836 240 365 56 6 chr11 32916417 32916577 -88927279 + L1MEd LINE L1 439 606 -5513 8 836 2023 265 74 97 chr11 32916820 32917828 -88926028 - Lx8 LINE L1 0 7473 6489 8 836 231 242 0 15 chr11 32918330 32918397 -88925459 - RLTR22_Mus LTR ERVK -481 1327 1262 8 836 342 0 0 0 chr11 32918734 32918772 -88925084 + (TTG)n Simple_repeat Simple_repeat 2 39 0 8 836 414 0 0 0 chr11 32918776 32918822 -88925034 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 8 836 694 281 125 64 chr11 32918899 32919117 -88924739 + L1ME1 LINE L1 216 468 -5916 8 836 595 132 336 7 chr11 32919117 32919254 -88924602 - B2_Mm2 SINE B2 -12 183 2 8 836 694 281 125 64 chr11 32919254 32919426 -88924430 + L1ME1 LINE L1 469 630 -5754 8 836 618 257 58 24 chr11 32919461 32919752 -88924104 + L1M4c LINE L1 1895 2195 -4189 8 836 272 221 29 0 chr11 32919768 32919836 -88924020 + L1ME1 LINE L1 831 900 -5563 8 836 1015 303 69 32 chr11 32919866 32920404 -88923452 + L1MA8 LINE L1 5546 6103 -188 8 836 23 0 0 0 chr11 32920542 32920565 -88923291 + AT_rich Low_complexity Low_complexity 1 23 0 8 836 639 276 82 99 chr11 32920632 32920813 -88923043 + L1ME1 LINE L1 965 1136 -5327 8 836 1171 75 0 0 chr11 32920813 32920960 -88922896 + B1_Mus2 SINE Alu 1 147 0 8 836 639 276 82 99 chr11 32920960 32921373 -88922483 + L1ME1 LINE L1 1137 1549 -4914 8 836 21 57 0 0 chr11 32921656 32921691 -88922165 + AT_rich Low_complexity Low_complexity 1 35 0 8 836 270 0 0 0 chr11 32921732 32921762 -88922094 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 836 1680 269 118 34 chr11 32921916 32923084 -88920772 + L1ME1 LINE L1 2096 3395 -2987 8 836 569 268 14 7 chr11 32923126 32923269 -88920587 - B1_Mur1 SINE Alu -5 144 1 8 836 802 175 80 0 chr11 32923353 32923490 -88920366 + B1_Mur2 SINE Alu 1 148 -1 8 836 341 310 109 93 chr11 32923619 32923717 -88920139 + L1ME1 LINE L1 3700 3796 -2586 8 836 1718 165 103 6 chr11 32923717 32923881 -88919975 + ORR1D1 LTR MaLR 1 167 -207 8 836 531 0 0 0 chr11 32923881 32923940 -88919916 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 836 1718 165 103 6 chr11 32923940 32924116 -88919740 + ORR1D1 LTR MaLR 168 373 -1 8 836 341 310 109 93 chr11 32924116 32924328 -88919528 + L1ME1 LINE L1 3797 4044 -2338 8 836 360 279 8 83 chr11 32924328 32924449 -88919407 + PB1D10 SINE Alu 1 112 -5 8 836 341 310 109 93 chr11 32924449 32924695 -88919161 + L1ME1 LINE L1 4045 4266 -2116 8 836 573 222 248 15 chr11 32924933 32925139 -88918717 + B4 SINE B4 26 279 -13 8 836 309 26 0 0 chr11 32925145 32925183 -88918673 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 836 280 283 35 0 chr11 32925229 32925342 -88918514 + L1MD LINE L1 4233 4349 -1797 8 836 509 313 68 84 chr11 32925498 32926048 -88917808 + L1ME1 LINE L1 5701 6246 -169 8 836 189 301 241 0 chr11 32926236 32926319 -88917537 - L2a LINE L2 -268 3158 3056 8 836 25 0 0 0 chr11 32926837 32926862 -88916994 + AT_rich Low_complexity Low_complexity 1 25 0 8 836 547 320 79 42 chr11 32926876 32926892 -88916964 + L1M5 LINE L1 3115 3127 -3019 8 836 1983 152 15 84 chr11 32926892 32926965 -88916891 - ORR1B2 LTR MaLR 0 367 326 8 836 1218 42 7 0 chr11 32926965 32927109 -88916747 - B1_Mus1 SINE Alu 0 148 4 8 836 1983 152 15 84 chr11 32927109 32927429 -88916427 - ORR1B2 LTR MaLR -42 325 1 8 836 547 320 79 42 chr11 32927429 32927742 -88916114 + L1M5 LINE L1 3128 3456 -2690 8 836 1142 42 7 0 chr11 32928096 32928238 -88915618 - B1_Mus2 SINE Alu 0 147 5 8 836 378 187 232 32 chr11 32928465 32928620 -88915236 - RMER1B Other Other 0 1066 881 8 836 404 216 294 0 chr11 32928620 32928722 -88915134 - B1_Mus1 SINE Alu -15 133 2 8 836 295 222 150 10 chr11 32928765 32928865 -88914991 - PB1D10 SINE Alu -1 116 3 8 836 3535 187 169 5 chr11 32928866 32929612 -88914244 - RMER1B Other Other -198 868 1 8 836 825 225 63 0 chr11 32929645 32929836 -88914020 - B3 SINE B2 -11 205 3 8 836 929 136 0 14 chr11 32930370 32930512 -88913344 - B1_Mur4 SINE Alu -1 149 10 8 836 234 0 0 0 chr11 32930584 32930610 -88913246 + (TAA)n Simple_repeat Simple_repeat 1 26 0 8 836 556 297 49 63 chr11 32930854 32931077 -88912779 + ID_B1 SINE B4 5 224 0 8 836 2143 143 20 17 chr11 32931007 32931356 -88912500 - ORR1C1 LTR MaLR 0 378 29 8 836 433 201 144 43 chr11 32931362 32931549 -88912307 - L1MA5A LINE L1 -435 5862 5657 8 836 27 29 0 0 chr11 32931611 32931645 -88912211 + AT_rich Low_complexity Low_complexity 1 34 0 8 836 6179 212 70 38 chr11 32931645 32931906 -88911950 - Lx7 LINE L1 0 7696 7423 8 836 330 67 0 0 chr11 32931906 32931951 -88911905 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 836 6179 212 70 38 chr11 32931951 32933195 -88910661 - Lx7 LINE L1 -274 7422 6142 8 836 662 285 79 40 chr11 32933204 32933507 -88910349 - L1MA5A LINE L1 -697 5594 5280 8 836 1483 333 84 70 chr11 32933529 32934121 -88909735 - L1MA5A LINE L1 -1221 4919 4388 8 836 1104 172 64 0 chr11 32934121 32934324 -88909532 + B3 SINE B2 1 216 0 8 836 1483 333 84 70 chr11 32934324 32934483 -88909373 - L1MA5A LINE L1 -1753 4387 4235 8 836 1480 22 72 0 chr11 32934483 32934663 -88909193 - B2_Mm1a SINE B2 0 193 1 9 836 1483 333 84 70 chr11 32934663 32935391 -88908465 - L1MA5A LINE L1 -1906 4234 3419 8 836 36 77 0 0 chr11 32935586 32935664 -88908192 + AT_rich Low_complexity Low_complexity 1 78 0 9 836 425 338 17 20 chr11 32935983 32936164 -88907692 - B4A SINE B4 -13 279 106 9 836 312 367 0 0 chr11 32936503 32936582 -88907274 + MTE2a LTR MaLR 84 162 -217 9 836 547 239 79 7 chr11 32936612 32936751 -88907105 + MTE2a LTR MaLR 213 361 -18 9 836 916 117 0 7 chr11 32936751 32936889 -88906967 + MurERV4_19-int LTR ERVK 4177 4313 -1467 9 836 5081 141 38 55 chr11 32936872 32938002 -88905854 + MurERV4_19-int LTR ERVK 4476 5778 -2 9 836 1056 156 16 16 chr11 32938067 32938250 -88905606 + RMER19C LTR ERVK 429 611 0 9 836 225 262 34 45 chr11 32939794 32939882 -88903974 - L1MB5 LINE L1 -68 6106 6020 9 836 780 236 18 6 chr11 32940715 32940881 -88902975 - MTD LTR MaLR -55 364 197 9 836 1368 269 89 32 chr11 32940896 32941113 -88902743 + Lx7 LINE L1 5277 5502 -345 9 836 3988 162 119 63 chr11 32941113 32941964 -88901892 + RMER19B LTR ERVK 5 902 0 9 836 1368 264 94 32 chr11 32941964 32942308 -88901548 + Lx7 LINE L1 5503 5903 -1793 9 836 225 204 0 0 chr11 32942461 32942505 -88901351 + T-rich Low_complexity Low_complexity 1 44 0 9 836 2010 192 98 18 chr11 32942518 32943006 -88900850 - RLTR11A2 LTR ERVK 0 527 1 9 836 590 329 73 15 chr11 32943217 32943547 -88900309 + L1_Rod LINE L1 1519 1867 -3980 9 836 4307 83 0 0 chr11 32943548 32944204 -88899652 - L1_Mus4 LINE L1 -701 5937 5282 9 836 5645 79 1 1 chr11 32944199 32944933 -88898923 + L1_Mus4 LINE L1 5891 6624 -12 9 836 879 189 121 0 chr11 32945103 32945293 -88898563 + B3 SINE B2 4 216 0 9 836 769 199 0 41 chr11 32945296 32945443 -88898413 + B1_Mus2 SINE Alu 1 141 -6 9 836 186 43 0 0 chr11 32945445 32945468 -88898388 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 9 836 1591 221 66 7 chr11 32945524 32945961 -88897895 - Lx5 LINE L1 -711 6339 5877 9 836 3425 179 7 3 chr11 32945958 32946570 -88897286 + Lx5 LINE L1 6346 6959 -91 9 836 827 263 59 55 chr11 32946644 32946881 -88896975 + B4 SINE B4 2 239 -53 9 836 1443 74 16 5 chr11 32947072 32947262 -88896594 + B2_Mm2 SINE B2 1 192 -3 9 836 260 183 67 79 chr11 32948461 32948550 -88895306 - MIRb SINE MIR -133 135 48 9 836 243 275 29 14 chr11 32948657 32948727 -88895129 + L2c LINE L2 3129 3199 -188 9 836 4612 4 0 0 chr11 32948734 32949227 -88894629 + MT2_Mm LTR ERVL 1 493 0 9 836 1008 265 38 138 chr11 32949335 32949733 -88894123 - ORR1D2 LTR MaLR -12 358 1 9 836 317 329 69 17 chr11 32950871 32951044 -88892812 + MIRb SINE MIR 26 207 -61 9 836 367 332 109 28 chr11 32951120 32951331 -88892525 + MLT2B4 LTR ERVL 1 228 -328 9 836 444 286 0 9 chr11 32951375 32951481 -88892375 + B4A SINE B4 188 292 0 9 836 557 314 7 21 chr11 32951576 32951716 -88892140 + RSINE1 SINE B4 2 139 -26 9 836 393 186 0 0 chr11 32951734 32951744 -88892112 + (CA)n Simple_repeat Simple_repeat 2 11 0 9 836 186 43 0 0 chr11 32951744 32951767 -88892089 + (GA)n Simple_repeat Simple_repeat 2 24 0 9 836 393 186 0 0 chr11 32951767 32951853 -88892003 + (CA)n Simple_repeat Simple_repeat 2 87 0 9 836 3790 228 12 87 chr11 32951863 32951974 -88891882 - ORR1D2-int LTR MaLR -152 1428 1359 9 836 794 277 6 126 chr11 32951974 32952292 -88891564 + B4A SINE B4 1 280 -12 9 836 3790 243 68 138 chr11 32952292 32952321 -88891535 - MTE-int LTR MaLR -222 1358 1358 9 836 1706 178 170 16 chr11 32952321 32952686 -88891170 + MTC LTR MaLR 1 421 0 9 836 3790 243 68 138 chr11 32952686 32953915 -88889941 - ORR1D2-int LTR MaLR -222 1358 177 9 836 328 291 0 14 chr11 32954392 32954483 -88889373 - ORR1D2-int LTR MaLR -1429 151 40 9 836 834 256 125 8 chr11 32954496 32954744 -88889112 - MTEb LTR MaLR 0 379 103 9 836 397 364 46 21 chr11 32955165 32955406 -88888450 - MLT1L LTR MaLR -221 389 143 9 836 312 70 0 0 chr11 32957029 32957072 -88886784 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 9 836 319 283 113 33 chr11 32958116 32958328 -88885528 - Tigger7 DNA MER2_type -2 2489 2261 9 836 912 215 64 15 chr11 32958297 32958500 -88885356 - B3 SINE B2 -3 213 1 9 836 326 284 31 21 chr11 32958510 32958607 -88885249 - Tigger7 DNA MER2_type -2378 113 16 9 836 337 311 115 66 chr11 32958720 32959006 -88884850 + L1M5 LINE L1 5366 5665 -459 9 836 1321 242 39 30 chr11 32959419 32959996 -88883860 + RMER1B Other Other 50 510 -556 9 836 215 0 0 159 chr11 32959996 32960103 -88883753 + (CCCTG)n Simple_repeat Simple_repeat 3 92 0 9 836 3068 216 54 122 chr11 32960103 32961095 -88882761 + RMER1A Other Other 51 975 -55 9 836 226 301 53 97 chr11 32961101 32961121 -88882735 + MT2B2 LTR ERVL 141 248 -335 9 836 466 247 21 0 chr11 32961121 32961214 -88882642 + B1F1 SINE Alu 1 95 -54 9 836 267 103 0 0 chr11 32961221 32961260 -88882596 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 836 194 268 40 40 chr11 32962133 32962207 -88881649 + MIRc SINE MIR 80 153 -115 9 836 4435 18 2 0 chr11 32962305 32962797 -88881059 + MT2_Mm LTR ERVL 1 493 0 9 836 46173 14 6 0 chr11 32962797 32968123 -88875733 + MERVL-int LTR ERVL 1 5360 -125 9 836 379 179 46 35 chr11 32968123 32968210 -88875646 + ORR1A3-int LTR MaLR 553 640 -1323 9 836 305 0 0 0 chr11 32968210 32968248 -88875608 + MERVL-int LTR ERVL 5448 5485 0 9 836 4435 18 2 0 chr11 32968248 32968740 -88875116 + MT2_Mm LTR ERVL 1 493 0 9 836 1129 159 84 11 chr11 32968806 32968997 -88874859 - URR1A DNA MER1_type 0 226 22 9 836 184 287 11 75 chr11 32969169 32969263 -88874593 - L2b LINE L2 -80 3295 3208 9 836 180 204 71 36 chr11 32969399 32969455 -88874401 - MIR SINE MIR -21 241 184 9 836 826 177 0 20 chr11 32969501 32969651 -88874205 + B1_Mus1 SINE Alu 1 147 -1 9 836 320 218 4 88 chr11 32969651 32969745 -88874111 + B1_Mus2 SINE Alu 44 129 -21 9 836 1672 36 0 5 chr11 32969947 32970143 -88873713 + B2_Mm2 SINE B2 1 195 0 9 836 1401 57 0 0 chr11 32970986 32971302 -88872554 + (CA)n Simple_repeat Simple_repeat 1 316 0 9 836 310 330 113 21 chr11 32971326 32971534 -88872322 - MIRb SINE MIR -29 239 7 9 836 681 257 86 0 chr11 32971542 32971729 -88872127 + MER102c DNA MER1_type 2 204 -127 9 836 222 37 0 0 chr11 32971752 32971779 -88872077 + (CCCCAA)n Simple_repeat Simple_repeat 3 29 0 9 836 306 0 0 0 chr11 32971915 32971949 -88871907 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 836 622 264 195 23 chr11 32972026 32972333 -88871523 - MTD LTR MaLR 0 419 60 9 836 191 330 100 22 chr11 32972556 32972646 -88871210 + L2b LINE L2 3241 3337 -38 9 836 813 272 168 34 chr11 32972670 32972858 -88870998 + L2 LINE L2 2241 2434 -985 9 836 1465 79 5 0 chr11 32972858 32973047 -88870809 + B2_Mm1a SINE B2 2 191 -2 9 836 813 272 168 34 chr11 32973047 32973299 -88870557 + L2 LINE L2 2435 2740 -679 9 836 361 243 128 73 chr11 32973315 32973479 -88870377 + MT2B LTR ERVL 106 278 -323 9 836 936 136 7 0 chr11 32973366 32973506 -88870350 + B1_Mus1 SINE Alu 8 148 0 9 836 633 171 0 0 chr11 32973506 32973623 -88870233 + GA-rich Low_complexity Low_complexity 4 120 0 9 836 248 241 74 25 chr11 32973638 32973719 -88870137 + L2 LINE L2 2806 2890 -529 9 836 415 315 8 0 chr11 32974204 32974331 -88869525 + (TGGA)n Simple_repeat Simple_repeat 1 128 0 9 836 461 272 184 28 chr11 32974490 32974702 -88869154 + MIRb SINE MIR 13 257 -11 9 836 199 297 96 29 chr11 32975688 32975792 -88868064 + MIRb SINE MIR 64 174 -94 9 836 338 297 32 82 chr11 32976569 32976727 -88867129 - MIRb SINE MIR -31 237 88 9 836 358 311 119 94 chr11 32976784 32977178 -88866678 - MLT1A1 LTR MaLR 0 408 5 9 836 182 220 17 0 chr11 32977219 32977278 -88866578 + (TGGA)n Simple_repeat Simple_repeat 4 63 0 9 836 360 103 0 0 chr11 32978004 32978062 -88865794 + (GA)n Simple_repeat Simple_repeat 2 59 0 9 836 283 316 59 15 chr11 32979843 32979978 -88863878 + MIR SINE MIR 13 153 -109 9 836 181 325 11 46 chr11 32980041 32980128 -88863728 - L2a LINE L2 -11 3415 3332 9 836 218 344 99 7 chr11 32980233 32980385 -88863471 + L2c LINE L2 3034 3199 -188 9 836 210 169 317 17 chr11 32980619 32980679 -88863177 - MIRc SINE MIR -117 151 74 9 836 305 111 0 36 chr11 32980718 32980774 -88863082 + (CCCCCT)n Simple_repeat Simple_repeat 3 56 0 9 836 864 184 7 7 chr11 32981703 32981845 -88862011 - B1_Mur2 SINE Alu -7 142 1 9 836 300 339 101 8 chr11 32981910 32982029 -88861827 + MTEa LTR MaLR 47 176 -203 9 836 455 278 100 52 chr11 32982241 32982590 -88861266 + L1ME1 LINE L1 5814 6179 0 9 836 1312 91 32 0 chr11 32982591 32982778 -88861078 + B2_Mm1t SINE B2 1 193 0 9 836 258 81 0 0 chr11 32982790 32982827 -88861029 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 9 836 346 320 198 6 chr11 32982956 32983138 -88860718 - MIRb SINE MIR -16 252 36 9 836 637 194 228 11 chr11 32983506 32983695 -88860161 + B4A SINE B4 1 230 -62 9 836 422 286 100 8 chr11 32983699 32983819 -88860037 + RSINE1 SINE B4 11 141 -24 9 836 729 43 0 0 chr11 32983819 32983912 -88859944 + (CA)n Simple_repeat Simple_repeat 1 93 0 9 836 384 40 0 0 chr11 32984012 32984062 -88859794 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 836 212 239 0 0 chr11 32984650 32984696 -88859160 + (CCTA)n Simple_repeat Simple_repeat 4 49 0 9 836 1029 288 32 114 chr11 32984814 32985253 -88858603 + MLT2D LTR ERVL 1 403 -11 9 836 198 103 0 0 chr11 32986936 32986965 -88856891 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 9 836 1115 281 77 9 chr11 32986987 32987310 -88856546 + MER2 DNA MER2_type 1 345 0 9 836 828 168 0 0 chr11 32987344 32987517 -88856339 + GA-rich Low_complexity Low_complexity 2 174 0 9 836 180 341 86 50 chr11 32988040 32988179 -88855677 + MIR SINE MIR 48 191 -71 9 836 458 263 8 33 chr11 32988974 32989096 -88854760 + PB1D7 SINE Alu 1 119 -1 9 836 271 192 26 0 chr11 32989395 32989473 -88854383 + CT-rich Low_complexity Low_complexity 4 83 0 9 836 210 143 0 0 chr11 32990152 32990187 -88853669 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 836 249 260 0 14 chr11 32990690 32990764 -88853092 - MLT1A1 LTR MaLR 0 408 336 9 836 447 279 115 52 chr11 32991018 32991192 -88852664 - B3A SINE B2 -1 197 13 9 836 211 247 39 64 chr11 32991122 32991200 -88852656 - B4A SINE B4 -211 81 6 1 836 1270 108 5 11 chr11 32991211 32991398 -88852458 - B2_Mm1a SINE B2 -7 186 1 1 836 216 283 22 0 chr11 32992219 32992265 -88851591 + B3A SINE B2 35 81 -117 1 836 1203 273 75 37 chr11 32992265 32992882 -88850974 - L1MB3 LINE L1 -126 6045 5398 1 836 1053 207 77 35 chr11 32992886 32993176 -88850680 + MTD LTR MaLR 1 286 -121 1 836 246 250 182 30 chr11 32993176 32993275 -88850581 - LTR33B LTR ERVL -302 201 88 1 836 378 0 0 0 chr11 32993428 32993470 -88850386 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 836 547 129 86 0 chr11 32993470 32993563 -88850293 - URR1B DNA MER1_type -42 183 83 1 836 225 181 107 87 chr11 32993471 32993574 -88850282 + CYRA11_Mm Unknown Y-chromosome 218 322 -295 1 836 1046 142 29 6 chr11 32993613 32993783 -88850073 + MTD LTR MaLR 246 419 0 1 836 1485 188 25 46 chr11 32993790 32994113 -88849743 + MTD-int LTR MaLR 4 319 -939 1 836 853 134 0 0 chr11 32994119 32994238 -88849618 + B3 SINE B2 1 119 -97 1 836 2629 124 18 28 chr11 32994240 32994698 -88849158 - RLTR11B LTR ERVK 0 453 1 1 836 3025 199 55 78 chr11 32994767 32995550 -88848306 + MTD-int LTR MaLR 353 1117 -141 1 836 243 189 0 0 chr11 32995620 32995673 -88848183 + (CTCA)n Simple_repeat Simple_repeat 3 55 0 1 836 531 298 55 111 chr11 32995827 32995959 -88847897 + B3A SINE B2 3 138 -60 1 836 270 0 0 0 chr11 32995959 32995989 -88847867 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 836 306 0 0 0 chr11 32995989 32996022 -88847834 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 836 285 298 55 111 chr11 32996022 32996069 -88847787 + B2_Mm2 SINE B2 128 172 -23 1 836 510 223 37 137 chr11 32996071 32996232 -88847624 + B1_Mur4 SINE Alu 1 145 -5 1 836 265 133 53 13 chr11 32996249 32996325 -88847531 + GA-rich Low_complexity Low_complexity 2 80 0 1 836 1033 89 6 12 chr11 32996583 32996743 -88847113 + (TCTCCC)n Simple_repeat Simple_repeat 2 160 0 1 836 228 268 96 12 chr11 32997095 32997178 -88846678 - MLT1H2 LTR MaLR -299 190 101 1 836 261 211 18 0 chr11 33000818 33000875 -88842981 + MIRb SINE MIR 115 172 -96 1 836 1189 78 62 0 chr11 33001263 33001442 -88842414 - L1_Mus2 LINE L1 0 6566 6377 2 836 408 111 0 0 chr11 33001801 33001873 -88841983 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 836 413 176 0 14 chr11 33002645 33002714 -88841142 + ID4_ SINE ID 3 70 -13 4 836 230 239 14 0 chr11 33002720 33002791 -88841065 + GA-rich Low_complexity Low_complexity 3 74 0 5 836 310 320 88 0 chr11 33002824 33002949 -88840907 + MIRb SINE MIR 79 214 -54 6 836 329 270 147 36 chr11 33003579 33003797 -88840059 + B4 SINE B4 67 292 0 7 836 531 208 0 0 chr11 33003797 33003917 -88839939 + (CA)n Simple_repeat Simple_repeat 1 120 0 8 836 230 291 25 206 chr11 33003967 33004253 -88839603 - MTEa LTR MaLR -34 325 92 9 836 273 245 19 113 chr11 33004309 33004415 -88839441 - MTEa LTR MaLR -283 96 1 9 836 351 0 0 0 chr11 33005241 33005280 -88838576 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 836 248 250 0 0 chr11 33005721 33005777 -88838079 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1 836 267 259 37 9 chr11 33005906 33006015 -88837841 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1 836 909 300 108 41 chr11 33006100 33006593 -88837263 + MT2A LTR ERVL 1 526 -7 1 836 591 289 35 20 chr11 33006599 33006797 -88837059 - MER82 DNA MER2_type -109 544 344 1 836 234 297 33 0 chr11 33007318 33007409 -88836447 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 1 836 199 269 15 0 chr11 33007410 33007540 -88836316 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 836 2581 131 19 21 chr11 33007587 33008008 -88835848 + RLTR9B2 LTR ERVK 1 420 0 1 836 207 352 0 0 chr11 33008009 33008080 -88835776 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 1 836 474 210 153 42 chr11 33008779 33008923 -88834933 - MLT1L LTR MaLR -163 447 288 1 836 397 339 0 0 chr11 33008925 33009034 -88834822 - PB1D10 SINE Alu -3 114 6 2 836 298 301 103 24 chr11 33009029 33009155 -88834701 - MLT1L LTR MaLR -302 308 173 1 836 221 210 0 46 chr11 33009374 33009439 -88834417 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 2 836 329 264 8 0 chr11 33010254 33010375 -88833481 + (TGGA)n Simple_repeat Simple_repeat 1 122 0 2 836 185 65 0 31 chr11 33010653 33010685 -88833171 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 836 1086 56 7 0 chr11 33010685 33010828 -88833028 - B1_Mus2 SINE Alu -2 145 2 2 836 189 0 0 0 chr11 33010973 33010994 -88832862 + (CCCTAA)n Simple_repeat Simple_repeat 2 22 0 2 836 276 312 79 16 chr11 33011690 33011817 -88832039 + MLT1K LTR MaLR 453 587 -8 2 836 247 274 142 0 chr11 33011997 33012103 -88831753 + MIRb SINE MIR 65 185 -83 2 836 342 0 0 0 chr11 33013694 33013732 -88830124 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 836 270 0 0 0 chr11 33013734 33013764 -88830092 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 836 183 80 0 0 chr11 33013792 33013817 -88830039 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 836 297 0 0 0 chr11 33013818 33013851 -88830005 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 836 384 22 0 0 chr11 33013907 33013952 -88829904 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 836 267 54 0 0 chr11 33013997 33014034 -88829822 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 836 220 372 91 0 chr11 33014362 33014483 -88829373 + MIRb SINE MIR 36 167 -101 3 836 186 300 138 6 chr11 33015044 33015225 -88828631 + L2a LINE L2 3033 3237 -189 3 836 430 213 32 0 chr11 33015298 33015392 -88828464 - B4A SINE B4 -6 286 190 3 836 393 262 19 10 chr11 33015411 33015515 -88828341 - B4A SINE B4 -186 106 2 3 836 212 77 0 25 chr11 33016970 33017010 -88826846 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 836 25 0 0 0 chr11 33017099 33017124 -88826732 + AT_rich Low_complexity Low_complexity 1 25 0 3 836 236 196 0 0 chr11 33017401 33017452 -88826404 + T-rich Low_complexity Low_complexity 1 51 0 3 836 290 315 65 0 chr11 33018314 33018406 -88825450 - MER31A LTR ERV1 -387 98 1 3 836 463 312 64 64 chr11 33018769 33019050 -88824806 + MLT1K LTR MaLR 308 588 -7 4 836 365 298 49 8 chr11 33019066 33019188 -88824668 + ORSL-2a DNA Tip100 180 306 -36 4 836 206 329 134 14 chr11 33019274 33019416 -88824440 + MIRb SINE MIR 17 175 -93 4 836 459 0 0 0 chr11 33020020 33020071 -88823785 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 836 685 245 42 38 chr11 33021818 33022030 -88821826 + ID_B1 SINE B4 3 215 -9 4 836 182 37 37 0 chr11 33022030 33022057 -88821799 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 4 836 324 293 93 64 chr11 33023393 33023597 -88820259 + MIR SINE MIR 53 262 0 4 836 192 268 0 0 chr11 33023994 33024065 -88819791 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 836 378 0 0 0 chr11 33025056 33025098 -88818758 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 836 536 252 227 50 chr11 33027576 33027814 -88816042 + B4A SINE B4 11 290 -2 4 836 195 167 45 0 chr11 33027908 33027974 -88815882 + CT-rich Low_complexity Low_complexity 3 71 0 5 836 206 318 103 73 chr11 33027974 33028160 -88815696 + L2b LINE L2 2945 3147 -279 5 836 1990 126 65 43 chr11 33028160 33028532 -88815324 + ORR1C2 LTR MaLR 5 384 0 5 836 187 318 103 73 chr11 33028532 33028606 -88815250 + L2b LINE L2 3148 3215 -211 5 836 652 158 14 93 chr11 33028657 33028797 -88815059 - B3 SINE B2 -86 130 2 5 836 564 145 0 0 chr11 33028919 33029050 -88814806 + (TC)n Simple_repeat Simple_repeat 2 132 0 5 836 260 295 31 10 chr11 33029144 33029240 -88814616 + MTEb LTR MaLR 275 372 -7 5 836 297 309 24 0 chr11 33029734 33029818 -88814038 - MIRc SINE MIR -60 208 123 5 837 333 0 0 0 chr11 33030506 33030543 -88813313 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 837 237 213 0 0 chr11 33033765 33033812 -88810044 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 837 287 325 29 17 chr11 33033989 33034140 -88809716 - MIRb SINE MIR -59 209 57 5 837 182 133 0 0 chr11 33034447 33034477 -88809379 - MIR SINE MIR -117 145 116 6 837 411 160 0 0 chr11 33035137 33035212 -88808644 + CT-rich Low_complexity Low_complexity 3 77 0 6 837 246 267 80 0 chr11 33035816 33035891 -88807965 + MIR SINE MIR 109 189 -73 6 837 247 250 15 15 chr11 33038000 33038065 -88805791 + MIR SINE MIR 100 164 -98 6 837 334 225 115 71 chr11 33038186 33038327 -88805529 - B4 SINE B4 -11 281 82 6 837 366 385 21 10 chr11 33038394 33038588 -88805268 - MIR SINE MIR -46 216 21 6 837 287 241 309 21 chr11 33038659 33038850 -88805006 + Tigger7 DNA MER2_type 32 277 -2214 6 837 317 224 108 39 chr11 33041081 33041183 -88802673 - PB1D10 SINE Alu -2 115 7 6 837 244 300 0 36 chr11 33041191 33041274 -88802582 - MIRc SINE MIR -102 166 87 6 837 241 280 76 53 chr11 33041457 33041623 -88802233 - MIR SINE MIR -47 221 46 6 837 796 167 210 0 chr11 33041695 33041881 -88801975 - URR1B DNA MER1_type 0 225 1 7 837 414 0 0 0 chr11 33042262 33042308 -88801548 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 837 399 292 16 20 chr11 33042453 33042613 -88801243 - MIRb SINE MIR -93 169 16 7 837 197 351 53 0 chr11 33042609 33042723 -88801133 + MIRb SINE MIR 29 148 -120 7 837 477 0 0 0 chr11 33046466 33046519 -88797337 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 837 432 0 0 0 chr11 33046519 33046567 -88797289 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 837 203 173 19 0 chr11 33047129 33047181 -88796675 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 7 837 282 95 0 0 chr11 33047345 33047387 -88796469 + (CCG)n Simple_repeat Simple_repeat 3 44 0 7 837 28 61 0 0 chr11 33047852 33047901 -88795955 + GC_rich Low_complexity Low_complexity 1 49 0 7 837 24 67 0 0 chr11 33047912 33047957 -88795899 + GC_rich Low_complexity Low_complexity 1 45 0 7 837 320 245 83 58 chr11 33049522 33049678 -88794178 + ID_B1 SINE B4 59 218 -6 8 837 445 237 79 36 chr11 33050663 33050803 -88793053 + B1_Mm SINE Alu 2 147 0 8 837 797 70 141 0 chr11 33051165 33051293 -88792563 + B1_Mus1 SINE Alu 3 148 0 8 837 189 0 0 0 chr11 33051293 33051314 -88792542 + (A)n Simple_repeat Simple_repeat 1 21 0 8 837 767 80 176 0 chr11 33051942 33052067 -88791789 + B1_Mm SINE Alu 1 147 0 8 837 912 53 121 8 chr11 33054200 33054332 -88789524 + B1_Mm SINE Alu 1 147 0 8 837 409 75 330 41 chr11 33056263 33056360 -88787496 + B2_Mm2 SINE B2 48 172 -23 8 837 337 230 212 20 chr11 33057400 33057551 -88786305 + L1M4 LINE L1 5276 5455 -723 8 837 924 113 101 0 chr11 33058505 33058673 -88785183 + L1_Mus3 LINE L1 6452 6636 -2 8 837 924 53 130 0 chr11 33058858 33058989 -88784867 - B1_Mus1 SINE Alu 0 148 1 8 837 527 26 39 0 chr11 33059454 33059531 -88784325 + L1Md_F3 LINE L1 6500 6579 -5 9 837 935 90 98 0 chr11 33059621 33059754 -88784102 + B1_Mus2 SINE Alu 1 146 -1 9 837 231 133 0 0 chr11 33059936 33059981 -88783875 + (CAT)n Simple_repeat Simple_repeat 3 47 0 9 837 447 110 84 12 chr11 33060067 33060150 -88783706 - B1_Mus2 SINE Alu 0 147 59 9 837 1009 82 8 0 chr11 33060169 33060303 -88783553 + B1_Mus2 SINE Alu 13 147 0 9 837 25 0 0 28 chr11 33064133 33064147 -88779709 + AT_rich Low_complexity Low_complexity 1 14 0 9 837 1223 61 0 0 chr11 33064147 33064294 -88779562 + B1_Mus2 SINE Alu 1 147 0 9 837 25 0 0 28 chr11 33064294 33064315 -88779541 + AT_rich Low_complexity Low_complexity 1 21 0 9 837 625 155 45 18 chr11 33064465 33064577 -88779279 + B1_Mur3 SINE Alu 12 126 -23 9 837 1049 72 0 0 chr11 33065215 33065346 -88778510 + B1_Mus2 SINE Alu 9 139 -8 9 837 183 42 0 0 chr11 33065346 33065370 -88778486 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 837 1334 96 16 0 chr11 33065433 33065620 -88778236 - B2_Mm2 SINE B2 -5 190 1 1 837 1222 55 7 0 chr11 33065709 33065855 -88778001 + B1_Mus1 SINE Alu 2 148 0 1 837 286 237 63 38 chr11 33065996 33066075 -88777781 - ID2 SINE ID 0 83 3 1 837 285 235 58 12 chr11 33066132 33066158 -88777698 - PB1D10 SINE Alu -10 107 81 1 837 1732 142 230 69 chr11 33066158 33066406 -88777450 + MURVY-LTR LTR ERV1 1 267 -252 1 837 189 0 0 0 chr11 33066406 33066427 -88777429 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 837 1732 142 230 69 chr11 33066427 33066625 -88777231 + MURVY-LTR LTR ERV1 268 518 -1 1 837 285 235 58 12 chr11 33066625 33066684 -88777172 - PB1D10 SINE Alu -37 80 19 1 837 219 331 77 46 chr11 33066649 33066779 -88777077 + B4A SINE B4 13 146 -146 1 837 404 224 58 12 chr11 33066737 33066823 -88777033 + PB1D10 SINE Alu 21 110 -7 1 837 367 189 467 0 chr11 33067046 33067136 -88776720 + B1_Mus2 SINE Alu 3 134 -13 1 837 198 0 0 0 chr11 33067136 33067158 -88776698 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 837 441 0 0 0 chr11 33067264 33067313 -88776543 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 837 312 183 41 6 chr11 33067329 33067443 -88776413 + L1M2 LINE L1 5475 5592 -708 1 837 239 167 24 0 chr11 33067549 33067591 -88776265 + B1_Mur4 SINE Alu 21 63 -87 1 837 223 338 0 0 chr11 33067658 33067729 -88776127 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 837 1454 211 103 0 chr11 33067735 33068047 -88775809 - ORR1C2 LTR MaLR -9 375 32 1 837 2869 147 76 73 chr11 33068058 33068430 -88775426 - ORR1C2-int LTR MaLR 0 1509 1129 1 837 792 32 0 0 chr11 33068430 33068525 -88775331 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 837 2869 147 76 73 chr11 33068525 33068658 -88775198 - ORR1C2-int LTR MaLR -381 1128 987 1 837 1397 77 39 0 chr11 33068658 33068840 -88775016 - B2_Mm1t SINE B2 -3 190 2 1 837 2869 147 76 73 chr11 33068840 33068950 -88774906 - ORR1C2-int LTR MaLR -523 986 893 1 837 644 109 0 73 chr11 33068954 33069063 -88774793 - B1_Mur3 SINE Alu -16 133 33 1 837 487 99 14 0 chr11 33069062 33069133 -88774723 - ORR1C2-int LTR MaLR -1055 315 244 1 837 365 238 23 23 chr11 33069192 33069278 -88774578 - B3 SINE B2 -1 215 130 1 837 1588 57 0 0 chr11 33069419 33069612 -88774244 + B2_Mm1t SINE B2 1 193 0 1 837 351 0 0 0 chr11 33070125 33070164 -88773692 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 837 1233 61 0 0 chr11 33070171 33070318 -88773538 - B1_Mus1 SINE Alu -1 147 1 1 837 1002 103 14 7 chr11 33071080 33071227 -88772629 - B1_Mus1 SINE Alu 0 148 1 1 837 180 97 0 0 chr11 33071984 33072015 -88771841 + (T)n Simple_repeat Simple_repeat 1 31 0 1 837 180 0 0 0 chr11 33072318 33072338 -88771518 + (CAAAT)n Simple_repeat Simple_repeat 3 22 0 1 837 245 56 28 0 chr11 33072670 33072706 -88771150 + B1_Mm SINE Alu 111 147 0 1 837 26 30 0 0 chr11 33073441 33073474 -88770382 + AT_rich Low_complexity Low_complexity 1 33 0 1 837 1001 219 10 10 chr11 33073586 33073780 -88770076 - B3 SINE B2 -2 214 21 1 837 223 294 0 0 chr11 33073976 33074027 -88769829 + polypyrimidine Low_complexity Low_complexity 4 54 0 1 837 548 174 52 60 chr11 33074038 33074154 -88769702 - PB1D9 SINE Alu 0 120 6 1 837 286 180 20 0 chr11 33074160 33074210 -88769646 - PB1 SINE Alu -35 92 42 1 837 206 118 0 0 chr11 33074211 33074245 -88769611 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 837 342 0 0 0 chr11 33074296 33074334 -88769522 + (T)n Simple_repeat Simple_repeat 1 38 0 1 837 1251 48 0 0 chr11 33074334 33074480 -88769376 - B1_Mm SINE Alu 0 147 2 1 837 771 241 83 25 chr11 33074518 33074563 -88769293 - B3 SINE B2 0 216 155 1 837 369 0 0 0 chr11 33074563 33074604 -88769252 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 837 771 241 83 25 chr11 33074604 33074762 -88769094 - B3 SINE B2 -62 154 1 1 837 650 213 56 7 chr11 33074793 33074935 -88768921 - B1_Mur4 SINE Alu 0 150 2 1 837 681 97 0 0 chr11 33076130 33076233 -88767623 + (GGGGA)n Simple_repeat Simple_repeat 4 106 0 1 837 227 215 161 181 chr11 33078044 33078243 -88765613 - MamGypLTR1d LTR Gypsy -583 230 36 1 837 204 355 74 34 chr11 33078283 33078458 -88765398 - L4 LINE RTE -61 1968 1787 1 837 459 258 150 13 chr11 33079005 33079158 -88764698 - MER44D DNA MER2_type -463 242 69 1 837 838 158 11 49 chr11 33079127 33079332 -88764524 - B3 SINE B2 -5 190 2 1 837 336 323 0 30 chr11 33079332 33079418 -88764438 - MER44D DNA MER2_type -622 83 1 1 837 577 184 29 10 chr11 33079417 33079521 -88764335 + B3A SINE B2 2 107 -91 1 837 328 335 49 43 chr11 33079521 33079563 -88764293 + RSINE1 SINE B4 3 150 -15 1 837 342 0 0 0 chr11 33079563 33079601 -88764255 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 837 328 335 49 43 chr11 33079601 33079616 -88764240 + RSINE1 SINE B4 151 165 0 1 837 566 265 37 15 chr11 33079618 33079752 -88764104 - B1_Mur3 SINE Alu -11 138 2 1 837 422 363 117 39 chr11 33079960 33080370 -88763486 - L1MC4a LINE L1 -1976 5906 5465 1 837 315 248 87 87 chr11 33080457 33080572 -88763284 - MER45A DNA Tip100 -20 158 44 1 837 648 120 0 0 chr11 33081768 33081868 -88761988 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 837 180 0 0 0 chr11 33082059 33082079 -88761777 + (T)n Simple_repeat Simple_repeat 1 20 0 1 837 338 286 132 9 chr11 33082081 33082187 -88761669 + PB1D7 SINE Alu 2 120 0 1 837 588 223 101 68 chr11 33082397 33082604 -88761252 - B3 SINE B2 -2 214 1 1 837 353 312 42 94 chr11 33082628 33082654 -88761202 + L1M5 LINE L1 3032 3059 -3087 1 837 855 122 7 80 chr11 33082654 33082805 -88761051 + B1_Mur4 SINE Alu 1 140 -10 1 837 279 0 0 0 chr11 33082805 33082836 -88761020 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 837 353 312 42 94 chr11 33082836 33082856 -88761000 + L1M5 LINE L1 3060 3083 -3063 1 837 896 219 43 14 chr11 33082856 33083064 -88760792 + B3 SINE B2 3 216 0 1 837 353 312 42 94 chr11 33083064 33083082 -88760774 + L1M5 LINE L1 3084 3102 -3044 1 837 1189 75 0 0 chr11 33083082 33083228 -88760628 + B1_Mus1 SINE Alu 3 148 0 1 837 353 312 42 94 chr11 33083228 33083372 -88760484 + L1M5 LINE L1 3103 3229 -2917 1 837 197 385 7 37 chr11 33083898 33084033 -88759823 - MIRb SINE MIR -91 177 47 1 837 228 135 0 0 chr11 33084254 33084291 -88759565 + (T)n Simple_repeat Simple_repeat 1 37 0 1 837 458 153 37 91 chr11 33084291 33084478 -88759378 - RMER17C LTR ERVK -137 273 97 1 837 557 83 0 12 chr11 33084479 33084564 -88759292 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 1 837 1079 51 65 0 chr11 33084564 33084702 -88759154 - B1_Mus2 SINE Alu 0 147 1 1 837 782 164 111 7 chr11 33084703 33084838 -88759018 - B1_Mur2 SINE Alu 0 149 1 1 837 1089 199 48 10 chr11 33085193 33085212 -88758644 - B3 SINE B2 0 216 199 1 837 1748 170 93 12 chr11 33085212 33085557 -88758299 - ORR1D1 LTR MaLR 0 374 2 1 837 1089 199 48 10 chr11 33085557 33085745 -88758111 - B3 SINE B2 -18 198 1 1 837 506 309 202 20 chr11 33085894 33086393 -88757463 - L1MA8 LINE L1 -13 6278 5689 1 837 211 224 27 95 chr11 33086413 33086487 -88757369 - BC1_Mm scRNA scRNA -79 73 5 1 837 1171 83 0 0 chr11 33087163 33087307 -88756549 + B1_Mus2 SINE Alu 2 145 -2 1 837 345 100 0 0 chr11 33087309 33087359 -88756497 + (A)n Simple_repeat Simple_repeat 1 50 0 1 837 297 109 0 0 chr11 33087518 33087573 -88756283 + (A)n Simple_repeat Simple_repeat 1 55 0 1 837 959 121 0 45 chr11 33087746 33087902 -88755954 + B1_Mur4 SINE Alu 2 150 0 1 837 1185 61 0 20 chr11 33088032 33088182 -88755674 + B1_Mus1 SINE Alu 2 148 0 1 837 210 129 42 14 chr11 33088200 33088271 -88755585 + A-rich Low_complexity Low_complexity 3 75 0 1 837 1040 132 12 18 chr11 33088462 33088484 -88755372 - B2_Mm1t SINE B2 -23 170 151 1 837 450 0 0 0 chr11 33088484 33088534 -88755322 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 837 1223 34 7 0 chr11 33088534 33088681 -88755175 - B2_Mm2 SINE B2 -46 149 2 1 837 1210 134 0 16 chr11 33088692 33088881 -88754975 - B2_Mm2 SINE B2 -8 187 2 1 837 550 303 60 27 chr11 33088921 33089104 -88754752 + B3A SINE B2 9 197 -1 1 837 1224 64 73 28 chr11 33089134 33089311 -88754545 + B2_Mm2 SINE B2 2 186 -9 1 837 908 170 0 20 chr11 33089320 33089470 -88754386 + B1_Mur3 SINE Alu 1 147 -2 1 837 591 15 0 0 chr11 33089635 33089703 -88754153 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 837 1185 82 0 0 chr11 33089703 33089849 -88754007 - B1_Mus1 SINE Alu -1 147 2 1 837 231 114 0 0 chr11 33089849 33089884 -88753972 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 837 612 27 0 0 chr11 33090088 33090162 -88753694 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 837 323 254 0 0 chr11 33090193 33090260 -88753596 + PB1D10 SINE Alu 14 80 -37 1 837 659 318 35 6 chr11 33090317 33090634 -88753222 - L1MB7 LINE L1 -98 6086 5761 1 837 207 220 0 0 chr11 33091482 33091532 -88752324 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 837 369 0 0 0 chr11 33093321 33093362 -88750494 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 837 362 326 21 21 chr11 33093625 33093766 -88750090 + GA-rich Low_complexity Low_complexity 4 144 0 1 837 266 309 150 26 chr11 33094040 33094193 -88749663 + MIRb SINE MIR 94 265 -3 1 837 360 352 62 36 chr11 33094193 33094417 -88749439 + MIRb SINE MIR 37 266 -2 1 837 627 14 0 0 chr11 33094539 33094611 -88749245 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 1 837 1233 101 0 0 chr11 33094612 33094791 -88749065 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 837 1204 49 0 0 chr11 33094793 33094935 -88748921 - B1_Mus1 SINE Alu -6 142 1 1 837 277 125 0 59 chr11 33095744 33095795 -88748061 + MIR SINE MIR 114 161 -101 1 837 202 205 0 0 chr11 33098094 33098133 -88745723 + MIRm SINE MIR 115 153 -123 1 837 264 262 0 61 chr11 33099584 33099698 -88744158 + GA-rich Low_complexity Low_complexity 1 107 0 1 837 26 50 0 0 chr11 33101045 33101085 -88742771 + GC_rich Low_complexity Low_complexity 1 40 0 1 837 297 0 0 0 chr11 33101763 33101796 -88742060 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 837 23 33 0 0 chr11 33103294 33103324 -88740532 + GC_rich Low_complexity Low_complexity 1 30 0 2 837 25 31 0 0 chr11 33103336 33103368 -88740488 + GC_rich Low_complexity Low_complexity 1 32 0 2 837 205 295 0 32 chr11 33105158 33105221 -88738635 + MIR SINE MIR 38 98 -110 2 837 373 290 93 37 chr11 33106161 33106322 -88737534 + MER5A DNA MER1_type 20 189 0 2 837 332 194 15 0 chr11 33106486 33106553 -88737303 + ID4 SINE ID 8 75 -8 2 837 283 236 73 73 chr11 33106591 33106687 -88737169 - PB1D10 SINE Alu -21 96 1 2 837 831 220 66 19 chr11 33106709 33106922 -88736934 - ID_B1 SINE B4 -1 223 1 2 837 21 0 0 0 chr11 33107724 33107745 -88736111 + AT_rich Low_complexity Low_complexity 1 21 0 2 837 1000 171 166 0 chr11 33108526 33108719 -88735137 - URR1B DNA MER1_type 0 225 1 2 837 197 65 32 0 chr11 33111156 33111187 -88732669 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 2 837 374 276 40 8 chr11 33111935 33112059 -88731797 + B1F1 SINE Alu 1 128 -21 2 837 21 0 0 0 chr11 33113239 33113260 -88730596 + AT_rich Low_complexity Low_complexity 1 21 0 2 837 222 368 18 62 chr11 33113868 33113981 -88729875 + PB1D10 SINE Alu 5 112 -5 2 837 234 0 0 0 chr11 33113993 33114019 -88729837 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 837 367 287 83 0 chr11 33114032 33114140 -88729716 + ID_B1 SINE B4 30 146 -78 2 837 523 240 0 39 chr11 33114145 33114275 -88729581 + RSINE1 SINE B4 2 126 -39 2 837 204 40 0 0 chr11 33114371 33114396 -88729460 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 837 758 176 59 0 chr11 33114579 33114715 -88729141 + B1_Mur4 SINE Alu 1 144 -6 2 837 543 125 29 0 chr11 33114718 33114822 -88729034 + GA-rich Low_complexity Low_complexity 2 108 0 2 837 8430 128 66 13 chr11 33114920 33116359 -88727497 + Lx4B LINE L1 5552 7058 0 2 837 235 256 46 11 chr11 33116609 33116696 -88727160 + L2b LINE L2 3229 3318 -57 2 837 186 118 0 0 chr11 33116720 33116754 -88727102 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2 837 1178 55 7 0 chr11 33119823 33119969 -88723887 - B1_Mus2 SINE Alu 0 147 1 2 837 198 103 0 0 chr11 33120611 33120640 -88723216 + (TCCG)n Simple_repeat Simple_repeat 1 29 0 2 837 231 88 0 0 chr11 33120641 33120675 -88723181 + (CAGC)n Simple_repeat Simple_repeat 4 37 0 2 837 342 0 0 0 chr11 33121685 33121723 -88722133 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 837 22 0 0 0 chr11 33125428 33125450 -88718406 + AT_rich Low_complexity Low_complexity 1 22 0 2 837 713 267 36 22 chr11 33127330 33127552 -88716304 - Lx9 LINE L1 -169 7475 7251 2 837 328 232 83 24 chr11 33127540 33127624 -88716232 + Lx9 LINE L1 7166 7254 -390 2 837 231 296 93 75 chr11 33127788 33128066 -88715790 - L2b LINE L2 -17 3358 3076 2 837 750 300 70 24 chr11 33129218 33129559 -88714297 - ORR1E LTR MaLR -2 357 1 2 837 193 203 54 79 chr11 33130750 33130817 -88713039 + MIRc SINE MIR 62 134 -134 2 837 1271 67 72 6 chr11 33130843 33131024 -88712832 - B2_Mm2 SINE B2 -2 193 1 2 837 902 149 13 20 chr11 33131075 33131226 -88712630 - B1_Mur4 SINE Alu 0 150 1 2 837 1102 45 167 0 chr11 33131389 33131545 -88712311 - B2_Mm2 SINE B2 -12 183 2 2 837 286 228 12 37 chr11 33132259 33132341 -88711515 + ID4 SINE ID 4 83 0 2 837 832 143 0 0 chr11 33132382 33132508 -88711348 + B1_Mus2 SINE Alu 13 138 -9 2 837 234 277 85 47 chr11 33132524 33132630 -88711226 - RMER21B LTR ERV1 -170 672 563 2 837 563 39 0 25 chr11 33132606 33132685 -88711171 - B1_Mus2 SINE Alu 0 147 71 2 837 28 29 0 0 chr11 33134620 33134655 -88709201 + AT_rich Low_complexity Low_complexity 1 35 0 2 837 292 326 56 0 chr11 33135822 33135911 -88707945 - RSINE1 SINE B4 -8 157 64 2 837 228 111 0 0 chr11 33136034 33136070 -88707786 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 837 560 287 52 13 chr11 33136073 33136253 -88707603 - B4 SINE B4 -23 269 81 2 837 815 182 171 0 chr11 33136323 33136499 -88707357 - B3 SINE B2 -7 209 4 2 837 187 152 43 0 chr11 33136598 33136644 -88707212 + CT-rich Low_complexity Low_complexity 1 48 0 2 837 664 126 215 0 chr11 33137084 33137219 -88706637 + B2_Mm2 SINE B2 31 194 -1 2 837 487 154 0 0 chr11 33137568 33137646 -88706210 + B3A SINE B2 8 85 -113 2 837 247 359 46 0 chr11 33138097 33138228 -88705628 + MIRb SINE MIR 91 227 -41 2 837 252 0 0 0 chr11 33138972 33139000 -88704856 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 837 232 330 208 8 chr11 33141380 33141543 -88702313 + MIRb SINE MIR 7 197 -71 2 837 1322 127 16 0 chr11 33141551 33141740 -88702116 + B2_Mm2 SINE B2 2 193 -2 2 837 670 271 73 35 chr11 33143691 33143951 -88699905 - B4A SINE B4 -21 271 2 2 837 232 318 118 0 chr11 33144317 33144402 -88699454 - MIRb SINE MIR -113 155 61 2 837 889 244 9 31 chr11 33144866 33145094 -88698762 - ID_B1 SINE B4 0 224 2 2 837 357 240 160 0 chr11 33145434 33145534 -88698322 + PB1D10 SINE Alu 2 117 0 2 837 629 226 8 38 chr11 33147876 33148009 -88695847 + B1_Mur1 SINE Alu 10 138 -11 2 837 353 22 22 0 chr11 33148009 33148055 -88695801 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 837 2318 137 6 3 chr11 33148471 33148829 -88695027 + RLTR15 LTR ERVK 1 359 0 2 837 2413 290 93 40 chr11 33148984 33150096 -88693760 + Lx7 LINE L1 6300 7466 -7 2 837 269 79 0 0 chr11 33150097 33150135 -88693721 - U2 snRNA snRNA -150 38 1 2 837 715 79 0 0 chr11 33150276 33150377 -88693479 + B2_Mm2 SINE B2 27 127 -68 2 837 623 284 34 13 chr11 33150637 33150872 -88692984 + L1MEc LINE L1 35 274 -6126 2 837 612 182 53 87 chr11 33151743 33151846 -88692010 + B1_Mur3 SINE Alu 5 95 -54 2 837 1354 65 32 11 chr11 33151846 33152004 -88691852 + B2_Mm1t SINE B2 2 160 -33 2 837 207 0 0 0 chr11 33152004 33152027 -88691829 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 837 1354 65 32 11 chr11 33152027 33152056 -88691800 + B2_Mm1t SINE B2 161 193 0 2 837 612 182 53 87 chr11 33152056 33152102 -88691754 + B1_Mur3 SINE Alu 96 149 0 2 837 2505 88 81 16 chr11 33152291 33152673 -88691183 + MTB_Mm LTR MaLR 1 407 0 2 837 5114 133 93 13 chr11 33152676 33153688 -88690168 + MTB_Mm-int LTR MaLR 6 1098 -160 2 837 31690 93 12 10 chr11 33153689 33159445 -88684411 - L1_Mus3 LINE L1 -7 6631 879 2 837 297 169 0 0 chr11 33159446 33159511 -88684345 + MTB_Mm-int LTR MaLR 1028 1092 -6 2 837 3021 68 20 15 chr11 33159516 33159921 -88683935 + MTB_Mm LTR MaLR 1 407 0 2 837 327 286 133 0 chr11 33160620 33160725 -88683131 + RSINE1 SINE B4 4 122 -43 2 837 563 306 25 65 chr11 33160789 33161068 -88682788 + L1MD LINE L1 2339 2606 -3540 2 837 554 136 146 0 chr11 33161094 33161204 -88682652 + B1_Mus2 SINE Alu 22 147 0 2 838 1771 277 101 26 chr11 33161391 33161922 -88681934 + Lx8 LINE L1 6768 7323 -150 2 838 2119 113 126 28 chr11 33161922 33162278 -88681578 - ORR1B1 LTR MaLR 0 394 4 2 838 1771 277 101 26 chr11 33162278 33162401 -88681455 + Lx8 LINE L1 7324 7471 -2 2 838 25 0 0 0 chr11 33162401 33162426 -88681430 + AT_rich Low_complexity Low_complexity 1 25 0 2 838 379 296 118 47 chr11 33162790 33163130 -88680726 + L1ME1 LINE L1 3313 3676 -2470 2 838 393 198 127 36 chr11 33163146 33163245 -88680611 + PB1D9 SINE Alu 1 112 -8 2 838 201 39 0 0 chr11 33163245 33163271 -88680585 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 838 423 172 24 3 chr11 33163519 33163614 -88680242 - MTD LTR MaLR 0 419 302 2 838 747 275 144 26 chr11 33163777 33164382 -88679474 + L1ME1 LINE L1 5360 6070 -109 2 838 22 0 0 0 chr11 33164451 33164473 -88679383 + AT_rich Low_complexity Low_complexity 1 22 0 2 838 195 305 35 35 chr11 33165003 33165088 -88678768 + MER5A DNA MER1_type 39 123 -66 2 838 378 310 0 30 chr11 33166371 33166504 -88677352 + Lx8 LINE L1 7199 7327 -146 2 838 771 161 0 0 chr11 33166589 33166726 -88677130 + (TA)n Simple_repeat Simple_repeat 1 137 0 2 838 3358 83 0 15 chr11 33166726 33167192 -88676664 - Lx3_Mus LINE L1 -640 5246 4788 2 838 9650 67 42 12 chr11 33167187 33168902 -88674954 + Lx3_Mus LINE L1 5234 7009 0 2 838 272 188 14 0 chr11 33168984 33169053 -88674803 + GA-rich Low_complexity Low_complexity 5 74 0 2 838 2259 177 92 45 chr11 33169285 33169649 -88674207 + MT2A LTR ERVL 1 385 -148 2 838 1356 64 64 0 chr11 33169649 33169837 -88674019 - L1Md_F3 LINE L1 0 6584 6385 2 838 2259 177 92 45 chr11 33169837 33169963 -88673893 + MT2A LTR ERVL 386 514 -19 2 838 308 111 19 0 chr11 33169972 33170026 -88673830 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2 838 683 197 38 30 chr11 33170026 33170157 -88673699 - B1_Mur3 SINE Alu -15 134 3 2 838 411 198 103 81 chr11 33170159 33170305 -88673551 - B1_Mus1 SINE Alu 0 149 9 2 838 226 121 0 0 chr11 33170304 33170337 -88673519 + MT2A LTR ERVL 499 531 -2 2 838 349 341 39 53 chr11 33170861 33171149 -88672707 + LTR33C LTR ERVL 290 566 -63 2 838 416 276 121 0 chr11 33171188 33171304 -88672552 - ID_B1 SINE B4 -71 153 24 2 838 184 346 39 0 chr11 33171627 33171705 -88672151 - L2c LINE L2 -18 3369 3289 2 838 419 278 170 5 chr11 33172919 33173107 -88670749 + MIRb SINE MIR 34 252 -16 2 838 3724 61 2 23 chr11 33173907 33174377 -88669479 - L1_Mus1 LINE L1 0 6567 6108 2 838 337 202 181 83 chr11 33174488 33174693 -88669163 + L2 LINE L2 1714 1938 -1481 2 838 906 184 7 0 chr11 33175222 33175369 -88668487 - B1_Mur4 SINE Alu -1 149 2 2 838 872 220 85 11 chr11 33176835 33177023 -88666833 - B3 SINE B2 -14 202 1 2 838 307 182 13 13 chr11 33177042 33177120 -88666736 + CT-rich Low_complexity Low_complexity 3 80 0 2 838 2692 80 0 6 chr11 33177124 33177465 -88666391 - L1_Mus1 LINE L1 -1 6566 6228 2 838 3735 42 7 0 chr11 33177465 33177913 -88665943 + L1_Mus1 LINE L1 5595 6045 -522 2 838 2182 198 89 36 chr11 33177948 33178451 -88665405 - Lx5 LINE L1 -43 7007 6478 2 838 1321 114 11 0 chr11 33179511 33179687 -88664169 + B2_Mm1t SINE B2 2 179 -14 2 838 304 64 193 26 chr11 33179733 33179834 -88664022 + B2_Mm2 SINE B2 49 195 0 3 838 597 212 178 23 chr11 33179954 33180128 -88663728 - B3 SINE B2 -14 202 2 3 838 200 291 244 0 chr11 33181548 33181634 -88662222 - MIRb SINE MIR -81 187 81 3 838 333 196 95 32 chr11 33181828 33181923 -88661933 + ID_B1 SINE B4 105 205 -19 3 838 662 268 145 0 chr11 33182328 33182507 -88661349 + B3 SINE B2 3 207 -9 3 838 22 0 0 0 chr11 33183448 33183470 -88660386 + AT_rich Low_complexity Low_complexity 1 22 0 3 838 6300 85 19 16 chr11 33184099 33184721 -88659135 + L1VL2 LINE L1 171 809 -5526 3 838 1109 50 7 0 chr11 33184721 33184860 -88658996 + L1_Mus2 LINE L1 6427 6566 0 3 838 13741 83 18 29 chr11 33184860 33186604 -88657252 + L1VL2 LINE L1 810 2514 -1101 3 838 420 37 0 0 chr11 33186604 33186658 -88657198 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 838 13741 83 18 29 chr11 33186658 33187130 -88656726 + L1VL2 LINE L1 2515 2988 -627 3 838 581 164 9 0 chr11 33187816 33187932 -88655924 + CT-rich Low_complexity Low_complexity 2 118 0 3 838 1171 95 0 0 chr11 33187932 33188079 -88655777 - B1_Mus1 SINE Alu 0 148 2 3 838 25 0 0 0 chr11 33188085 33188110 -88655746 + AT_rich Low_complexity Low_complexity 1 25 0 3 838 1067 93 20 0 chr11 33189071 33189221 -88654635 - B2_Mm2 SINE B2 -14 181 29 3 838 298 238 16 0 chr11 33189707 33189770 -88654086 + ID4 SINE ID 5 68 -15 3 838 231 36 0 0 chr11 33190227 33190255 -88653601 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 838 371 206 112 26 chr11 33190472 33190587 -88653269 - B1_Mur4 SINE Alu -22 127 2 3 838 254 267 236 33 chr11 33191706 33191888 -88651968 - L2a LINE L2 -47 3379 3161 3 838 294 337 157 0 chr11 33191918 33192007 -88651849 + RSINE1 SINE B4 61 163 -2 3 838 371 309 60 13 chr11 33192976 33193127 -88650729 + RSINE1 SINE B4 4 161 -4 3 838 192 190 49 49 chr11 33193903 33193964 -88649892 + L2c LINE L2 3101 3161 -226 3 838 540 89 0 11 chr11 33194049 33194140 -88649716 + Lx3A LINE L1 6891 6980 -1 3 838 25 65 0 0 chr11 33195254 33195300 -88648556 + AT_rich Low_complexity Low_complexity 1 46 0 3 838 275 23 0 0 chr11 33196404 33196448 -88647408 - L1Md_F2 LINE L1 0 6582 6539 3 838 233 330 126 47 chr11 33197979 33198170 -88645686 + MIRb SINE MIR 51 256 -12 3 838 767 126 29 18 chr11 33203198 33203368 -88640488 + CT-rich Low_complexity Low_complexity 4 175 0 3 838 268 284 246 29 chr11 33203466 33203604 -88640252 + B3A SINE B2 1 168 -30 3 838 272 312 116 8 chr11 33204051 33204180 -88639676 + MER5A DNA MER1_type 25 167 -22 3 838 324 291 121 25 chr11 33204832 33205032 -88638824 + MIRb SINE MIR 24 235 -27 3 838 24 0 0 0 chr11 33205343 33205367 -88638489 + AT_rich Low_complexity Low_complexity 1 24 0 3 838 767 260 16 104 chr11 33205404 33205722 -88638134 + Lx6 LINE L1 7147 7436 -24 3 838 251 242 0 16 chr11 33205745 33205808 -88638048 + ID4_ SINE ID 22 83 0 3 838 331 222 220 9 chr11 33206028 33206137 -88637719 + MIRb SINE MIR 64 195 -73 3 838 975 275 161 36 chr11 33206461 33206963 -88636893 + Lx9 LINE L1 6813 7377 -267 3 838 230 229 35 35 chr11 33207010 33207096 -88636760 + Lx9 LINE L1 7504 7589 -55 3 838 27 0 0 0 chr11 33207141 33207168 -88636688 + AT_rich Low_complexity Low_complexity 1 27 0 3 838 445 217 108 8 chr11 33207263 33207288 -88636568 - B4 SINE B4 -65 227 87 3 838 656 126 39 0 chr11 33207288 33207391 -88636465 - B1_Mus1 SINE Alu -40 108 2 3 838 296 322 16 57 chr11 33207663 33207785 -88636071 - MIRm SINE MIR -141 135 19 3 838 216 67 0 0 chr11 33208787 33208817 -88635039 + (CAAAC)n Simple_repeat Simple_repeat 4 33 0 3 838 818 249 99 73 chr11 33208941 33209037 -88634819 + L1MB5 LINE L1 5568 5669 -505 3 838 250 316 42 0 chr11 33209037 33209132 -88634724 + PB1D7 SINE Alu 5 103 -17 3 838 818 249 99 73 chr11 33209132 33209459 -88634397 + L1MB5 LINE L1 5670 6002 -172 3 838 369 0 0 0 chr11 33209631 33209672 -88634184 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 838 312 200 0 0 chr11 33209959 33210034 -88633822 + GA-rich Low_complexity Low_complexity 2 76 0 3 838 186 133 0 0 chr11 33210032 33210062 -88633794 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 838 528 266 35 0 chr11 33210194 33210337 -88633519 + MLT1D LTR MaLR 358 505 0 3 838 238 252 103 54 chr11 33210758 33210869 -88632987 - MIRb SINE MIR -50 218 120 3 838 191 262 0 0 chr11 33210837 33210879 -88632977 - MIRm SINE MIR -122 154 113 3 838 239 347 14 0 chr11 33211671 33211743 -88632113 + RSINE1 SINE B4 78 150 -15 3 838 222 37 0 0 chr11 33211748 33211775 -88632081 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 838 732 295 127 25 chr11 33215164 33215817 -88628039 + L1MA6 LINE L1 5461 6202 -98 3 838 254 350 0 12 chr11 33215820 33215901 -88627955 + ID4_ SINE ID 2 81 -2 3 838 21 0 0 0 chr11 33216039 33216060 -88627796 + AT_rich Low_complexity Low_complexity 1 21 0 3 838 279 0 0 0 chr11 33216096 33216127 -88627729 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 838 1230 58 0 0 chr11 33216127 33216265 -88627591 - B1_Mus1 SINE Alu -9 139 2 3 838 1183 233 55 55 chr11 33216566 33216766 -88627090 - L1MA6 LINE L1 -313 5987 5797 3 838 351 0 0 0 chr11 33216766 33216805 -88627051 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 838 1183 233 55 55 chr11 33216805 33217040 -88626816 - L1MA6 LINE L1 -504 5796 5552 3 838 838 308 28 0 chr11 33217188 33217402 -88626454 + ID_B1 SINE B4 5 224 0 3 838 323 249 251 34 chr11 33217444 33217619 -88626237 + ID_B1 SINE B4 4 216 -8 3 838 594 267 58 26 chr11 33217639 33217793 -88626063 + RSINE1 SINE B4 6 164 -1 3 838 281 268 0 0 chr11 33217926 33217982 -88625874 - ID4 SINE ID -25 58 3 3 838 309 329 182 18 chr11 33218961 33219131 -88624725 - MIRb SINE MIR -2 266 69 3 838 1246 47 0 13 chr11 33220023 33220173 -88623683 - B1_Mus1 SINE Alu 0 148 1 3 838 264 254 14 43 chr11 33220354 33220424 -88623432 - MIRb SINE MIR -181 87 20 3 838 379 205 64 0 chr11 33220822 33220900 -88622956 - MTB LTR MaLR -8 392 310 3 838 364 223 63 11 chr11 33220904 33220999 -88622857 - MTC LTR MaLR -321 100 1 3 838 5688 165 138 12 chr11 33220999 33222115 -88621741 - MTC-int LTR MaLR 0 1258 2 3 838 2490 170 5 30 chr11 33222114 33222544 -88621312 - MTC LTR MaLR 0 421 3 3 838 378 248 49 10 chr11 33222721 33222823 -88621033 - B3A SINE B2 -92 106 1 3 838 900 137 29 0 chr11 33223209 33223348 -88620508 - B1_Mur3 SINE Alu -6 143 1 3 838 7057 58 38 0 chr11 33223735 33224654 -88619202 + L1_Mus2 LINE L1 5605 6558 -8 3 838 275 49 0 24 chr11 33224654 33224696 -88619160 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 838 262 305 37 19 chr11 33224698 33224805 -88619051 + MER45A DNA Tip100 61 169 -9 3 838 1157 68 0 0 chr11 33224917 33225064 -88618792 - B1_Mus1 SINE Alu 0 148 2 3 838 495 264 42 68 chr11 33225089 33225280 -88618576 - B3A SINE B2 -1 197 12 3 838 504 72 0 0 chr11 33225731 33225800 -88618056 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 3 838 180 194 0 0 chr11 33226238 33226274 -88617582 + L2 LINE L2 778 813 -2606 3 838 22 0 0 0 chr11 33227413 33227435 -88616421 + AT_rich Low_complexity Low_complexity 1 22 0 3 838 258 32 0 0 chr11 33227775 33227806 -88616050 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 3 838 192 77 0 0 chr11 33228756 33228782 -88615074 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 3 838 304 288 87 16 chr11 33230600 33230727 -88613129 + HAL1-3A_ME LINE L1 2289 2424 -434 3 838 261 0 0 0 chr11 33232032 33232061 -88611795 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 838 25 0 0 0 chr11 33232733 33232758 -88611098 + AT_rich Low_complexity Low_complexity 1 25 0 3 838 256 283 41 61 chr11 33232921 33232932 -88610924 + MT2B LTR ERVL 155 163 -438 3 838 321 306 89 36 chr11 33232932 33233044 -88610812 + B1F1 SINE Alu 2 119 -30 3 838 449 90 0 60 chr11 33233174 33233284 -88610572 - L1Md_F2 LINE L1 0 6582 6492 3 838 3058 49 3 5 chr11 33233447 33233835 -88610021 - L1Md_F2 LINE L1 -1 6581 6195 3 838 180 111 0 0 chr11 33233838 33233865 -88609991 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 838 372 258 251 10 chr11 33234225 33234422 -88609434 - B4A SINE B4 -43 249 5 3 838 462 270 188 5 chr11 33238753 33238939 -88604917 - ID_B1 SINE B4 -2 222 3 3 838 802 212 89 20 chr11 33239417 33239584 -88604272 + B3 SINE B2 1 177 -39 3 838 423 0 0 0 chr11 33239584 33239631 -88604225 + (CATA)n Simple_repeat Simple_repeat 4 50 0 3 838 802 212 89 20 chr11 33239631 33239665 -88604191 + B3 SINE B2 178 215 -1 3 838 204 325 54 23 chr11 33239767 33239896 -88603960 + MIR SINE MIR 104 236 -26 3 838 24 0 0 0 chr11 33240407 33240431 -88603425 + AT_rich Low_complexity Low_complexity 1 24 0 3 838 646 169 83 15 chr11 33241235 33241367 -88602489 + B1_Mus1 SINE Alu 6 146 -2 3 838 807 238 39 10 chr11 33241462 33241670 -88602186 - B3 SINE B2 0 216 3 3 838 228 185 0 0 chr11 33242770 33242824 -88601032 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 838 226 243 25 63 chr11 33244759 33244838 -88599018 - RSINE1 SINE B4 -86 79 4 3 838 450 0 0 0 chr11 33245581 33245631 -88598225 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 838 407 345 46 33 chr11 33246286 33246439 -88597417 - RSINE1 SINE B4 -6 159 5 3 838 1139 44 0 0 chr11 33246862 33246998 -88596858 + B1_Mus2 SINE Alu 1 136 -11 3 838 219 36 0 0 chr11 33246998 33247026 -88596830 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 838 299 219 0 0 chr11 33247951 33248024 -88595832 - Lx5 LINE L1 0 7050 6978 3 838 339 260 197 4 chr11 33248056 33248278 -88595578 + B4A SINE B4 3 268 -24 3 838 240 35 0 0 chr11 33248290 33248319 -88595537 + (TCCCC)n Simple_repeat Simple_repeat 1 29 0 3 838 287 85 0 21 chr11 33248330 33248378 -88595478 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 838 249 57 0 0 chr11 33248378 33248413 -88595443 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 838 28 0 0 0 chr11 33249683 33249711 -88594145 + AT_rich Low_complexity Low_complexity 1 28 0 4 838 253 294 102 96 chr11 33250484 33250661 -88593195 - MIRb SINE MIR -65 203 26 4 838 567 335 32 19 chr11 33250973 33251189 -88592667 - MER20 DNA MER1_type 0 219 1 4 838 207 296 113 60 chr11 33251190 33251341 -88592515 - MIR SINE MIR -43 219 61 4 838 851 254 0 46 chr11 33251484 33251703 -88592153 + B3 SINE B2 2 210 -6 4 838 3232 79 2 0 chr11 33252473 33252891 -88590965 + L1_Mus1 LINE L1 6027 6445 -122 4 838 475 251 78 5 chr11 33253150 33253342 -88590514 + Lx9 LINE L1 7389 7594 -50 4 838 414 0 0 0 chr11 33253919 33253965 -88589891 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 838 483 164 0 0 chr11 33254061 33254165 -88589691 + GA-rich Low_complexity Low_complexity 1 104 0 4 838 476 268 52 104 chr11 33254283 33254437 -88589419 - RSINE1 SINE B4 0 165 20 4 838 305 270 183 38 chr11 33254761 33254794 -88589062 - B4A SINE B4 -39 253 104 4 838 622 102 31 0 chr11 33254794 33254892 -88588964 - PB1D9 SINE Alu -1 119 19 4 838 8585 107 77 29 chr11 33254926 33256763 -88587093 - L1_Mus2 LINE L1 -45 6521 4595 4 838 1032 274 86 18 chr11 33257825 33258152 -88585704 - ORR1E LTR MaLR -7 352 4 4 838 28 0 0 0 chr11 33260537 33260565 -88583291 + AT_rich Low_complexity Low_complexity 1 28 0 4 838 23 33 0 0 chr11 33261312 33261342 -88582514 + AT_rich Low_complexity Low_complexity 1 30 0 4 838 972 112 106 0 chr11 33264099 33264278 -88579578 - L1_Mus4 LINE L1 -5 6631 6434 4 838 622 301 27 23 chr11 33264608 33264829 -88579027 - Charlie1b DNA MER1_type -294 229 8 4 838 249 358 78 39 chr11 33264837 33265017 -88578839 + MIR SINE MIR 10 196 -66 4 838 1042 159 0 0 chr11 33265758 33265921 -88577935 - RMER6D LTR ERVK 0 720 558 4 838 4134 153 21 10 chr11 33266094 33266806 -88577050 - RMER6D LTR ERVK 0 720 1 4 838 662 308 179 32 chr11 33267760 33268206 -88575650 + MER34 LTR ERV1 29 540 -2 4 838 23 33 0 0 chr11 33269064 33269094 -88574762 + AT_rich Low_complexity Low_complexity 1 30 0 4 838 258 32 0 0 chr11 33269143 33269174 -88574682 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 838 231 161 69 35 chr11 33270315 33270373 -88573483 + RCHARR1 DNA MER1_type 184 243 -731 4 838 2214 87 6 20 chr11 33270387 33270728 -88573128 + L1_Mur1 LINE L1 4786 5121 -765 4 838 2000 50 0 0 chr11 33270724 33270962 -88572894 + L1Md_F2 LINE L1 5352 5589 -294 4 838 8362 29 3 0 chr11 33270963 33271937 -88571919 + L1Md_F2 LINE L1 5591 6567 -15 4 838 936 59 0 0 chr11 33273310 33273428 -88570428 + B1_Mus1 SINE Alu 21 138 -10 4 838 249 57 0 0 chr11 33273428 33273463 -88570393 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 838 258 105 0 0 chr11 33273463 33273501 -88570355 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 838 4018 65 0 6 chr11 33274459 33274970 -88568886 - L1_Mus2 LINE L1 -261 6305 5798 4 838 234 260 80 143 chr11 33275235 33275347 -88568509 - MLT1A0 LTR MaLR -240 125 21 4 838 613 326 104 17 chr11 33275566 33275797 -88568059 - B4A SINE B4 -41 251 1 4 838 890 108 8 0 chr11 33275856 33275976 -88567880 - Lx3B LINE L1 -1255 5718 5598 4 838 3407 104 29 18 chr11 33275972 33276520 -88567336 + Lx3C LINE L1 5687 6240 -736 4 838 2681 155 95 18 chr11 33276513 33277020 -88566836 + Lx3C LINE L1 6424 6969 -7 4 838 236 371 14 0 chr11 33277703 33277773 -88566083 - ID4_ SINE ID -1 82 12 4 838 192 208 40 40 chr11 33277836 33277886 -88565970 - L3b LINE CR1 0 482 433 4 838 1008 84 0 20 chr11 33278259 33278405 -88565451 - B1_Mur3 SINE Alu -2 147 5 4 838 306 324 72 22 chr11 33278451 33278466 -88565390 - B1F SINE Alu -1 148 3 4 838 343 380 24 24 chr11 33278466 33278590 -88565266 - ID_B1 SINE B4 -17 207 84 4 838 24 32 0 0 chr11 33278626 33278657 -88565199 + AT_rich Low_complexity Low_complexity 1 31 0 4 838 234 302 55 10 chr11 33279013 33279144 -88564712 + MIRm SINE MIR 3 152 -116 4 838 477 0 0 0 chr11 33279789 33279842 -88564014 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 838 468 0 0 0 chr11 33280024 33280076 -88563780 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 838 294 354 62 44 chr11 33280330 33280555 -88563301 - MLT1K LTR MaLR -239 356 128 4 838 271 283 101 0 chr11 33280801 33280900 -88562956 + PB1D10 SINE Alu 4 112 -5 4 838 239 221 0 171 chr11 33281445 33281527 -88562329 + LTR16B1 LTR ERVL 348 415 -65 4 838 192 179 0 0 chr11 33281560 33281599 -88562257 + (TTA)n Simple_repeat Simple_repeat 3 41 0 4 838 384 254 109 0 chr11 33281694 33281804 -88562052 + B1F2 SINE Alu 20 141 -8 4 838 2964 50 45 3 chr11 33281872 33282252 -88561604 + MTA_Mm LTR MaLR 1 396 0 4 838 216 0 0 0 chr11 33282448 33282472 -88561384 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 4 838 294 283 53 0 chr11 33282509 33282622 -88561234 + Lx9 LINE L1 7518 7636 -8 4 838 23 54 0 0 chr11 33282626 33282663 -88561193 + AT_rich Low_complexity Low_complexity 1 37 0 4 838 1454 120 0 0 chr11 33283149 33283365 -88560491 + L1_Mm LINE L1 5073 5288 -595 4 838 967 225 69 165 chr11 33283358 33283941 -88559915 + L1_Rod LINE L1 4998 5549 -331 4 838 846 160 28 0 chr11 33283950 33284094 -88559762 - B1_Mur4 SINE Alu -1 149 2 4 838 387 312 62 40 chr11 33284108 33284285 -88559571 - MLT1D LTR MaLR 0 505 325 4 838 953 274 69 54 chr11 33284522 33284857 -88558999 - Lx9 LINE L1 -963 6681 6342 4 838 426 85 0 0 chr11 33284860 33284919 -88558937 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 838 2054 254 70 47 chr11 33285075 33285845 -88558011 + Lx9 LINE L1 6678 7465 -179 4 838 494 266 9 0 chr11 33285957 33286066 -88557790 + B1F2 SINE Alu 40 149 0 4 838 28 29 0 0 chr11 33287563 33287598 -88556258 + AT_rich Low_complexity Low_complexity 1 35 0 4 838 2005 268 69 18 chr11 33287777 33288600 -88555256 + Lx7 LINE L1 4375 5280 -567 4 838 252 0 0 0 chr11 33288600 33288628 -88555228 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 838 1479 300 122 43 chr11 33288628 33289193 -88554663 + Lx7 LINE L1 5281 5908 -1788 4 838 329 212 126 22 chr11 33289266 33289401 -88554455 + L1M4c LINE L1 2075 2223 -5111 4 838 485 253 61 27 chr11 33289759 33290055 -88553801 + L1M4c LINE L1 2754 3059 -3949 4 838 389 306 151 32 chr11 33290479 33290857 -88552999 + L1M4c LINE L1 5841 6263 -743 4 838 1175 154 179 11 chr11 33290969 33291231 -88552625 + RLTR15 LTR ERVK 54 359 0 4 838 189 0 0 0 chr11 33292225 33292246 -88551610 + (TGGGGG)n Simple_repeat Simple_repeat 6 26 0 4 839 25 0 0 0 chr11 33293855 33293880 -88549976 + AT_rich Low_complexity Low_complexity 1 25 0 4 839 391 233 235 9 chr11 33294564 33294718 -88549138 + B3A SINE B2 1 187 -8 4 839 1329 131 4 22 chr11 33295382 33295609 -88548247 - L1_Mur2 LINE L1 -568 5309 5087 4 839 5767 104 35 8 chr11 33295611 33296476 -88547380 + Lx LINE L1 5765 6652 -2 4 839 207 100 0 0 chr11 33296487 33296517 -88547339 + (GAA)n Simple_repeat Simple_repeat 2 31 0 4 839 510 70 0 0 chr11 33296630 33296701 -88547155 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 839 1264 201 185 20 chr11 33296939 33297295 -88546561 + MTD LTR MaLR 5 419 0 4 839 1261 27 0 0 chr11 33297510 33297658 -88546198 + B1_Mus1 SINE Alu 1 148 0 4 839 211 169 68 0 chr11 33297661 33297720 -88546136 + GA-rich Low_complexity Low_complexity 3 65 0 4 839 402 314 16 24 chr11 33297731 33297858 -88545998 + RSINE1 SINE B4 11 136 -29 4 839 1483 169 167 60 chr11 33298164 33298517 -88545339 + Lx5 LINE L1 6640 7054 -4 4 839 215 292 122 11 chr11 33298528 33298618 -88545238 + L2a LINE L2 3144 3243 -183 4 839 931 295 79 21 chr11 33301374 33301803 -88542053 - RMER5 LTR ERV1 0 534 81 4 839 24 0 0 0 chr11 33302845 33302869 -88540987 + AT_rich Low_complexity Low_complexity 1 24 0 4 839 26 50 0 0 chr11 33303409 33303449 -88540407 + AT_rich Low_complexity Low_complexity 1 40 0 4 839 833 57 205 0 chr11 33305078 33305200 -88538656 + B1_Mur4 SINE Alu 4 150 0 4 839 196 68 68 0 chr11 33305200 33305238 -88538618 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 4 839 1136 44 0 0 chr11 33306040 33306176 -88537680 + B1_Mus2 SINE Alu 2 137 -10 4 839 216 0 0 0 chr11 33306176 33306200 -88537656 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 839 1674 198 75 94 chr11 33307139 33307525 -88536331 + Lx9 LINE L1 7141 7520 -124 4 839 279 0 0 0 chr11 33307525 33307556 -88536300 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 839 1674 198 75 94 chr11 33307556 33307677 -88536179 + Lx9 LINE L1 7521 7638 -6 4 839 8140 51 0 2 chr11 33307873 33309148 -88534708 - L1Md_F2 LINE L1 0 6582 5311 4 839 4184 69 0 0 chr11 33309146 33309682 -88534174 + L1Md_F2 LINE L1 4775 5310 -573 4 839 253 327 233 51 chr11 33310447 33310526 -88533330 - L2c LINE L2 -5 3382 3297 4 839 623 131 16 0 chr11 33310526 33310648 -88533208 + Lx3_Mus LINE L1 6882 7005 -4 4 839 253 327 233 51 chr11 33310648 33310864 -88532992 - L2c LINE L2 -91 3296 3033 4 839 4075 124 36 38 chr11 33311633 33312337 -88531519 + L1VL1 LINE L1 443 1124 -5858 4 839 8254 106 77 6 chr11 33312335 33314372 -88529484 + L1_Mus3 LINE L1 4435 6632 -6 4 839 294 336 62 33 chr11 33314496 33314801 -88529055 + L1MEf LINE L1 1355 1668 -4532 4 839 320 262 11 35 chr11 33314817 33314904 -88528952 + PB1D10 SINE Alu 14 98 -19 4 839 477 199 35 0 chr11 33315031 33315172 -88528684 + Lx2 LINE L1 6028 6173 -824 4 839 506 266 70 11 chr11 33316678 33316864 -88526992 + L1MA5 LINE L1 5709 5905 -395 4 839 438 298 15 0 chr11 33317015 33317146 -88526710 + L1MA5 LINE L1 6134 6266 -34 4 839 420 299 85 0 chr11 33317165 33317376 -88526480 + L1M3 LINE L1 5594 5822 -349 4 839 438 219 115 15 chr11 33317614 33317744 -88526112 + B1_Mus2 SINE Alu 4 146 -1 5 839 2742 73 22 19 chr11 33318879 33318972 -88524884 + BGLII LTR ERVK 1 93 -328 5 839 2241 78 143 11 chr11 33318972 33319321 -88524535 - L1Md_F2 LINE L1 -1 6581 6187 5 839 2742 73 22 19 chr11 33319321 33319644 -88524212 + BGLII LTR ERVK 94 416 -5 5 839 10956 48 1 2 chr11 33319747 33321817 -88522039 - L1Md_F2 LINE L1 -12 6570 4503 5 839 23 33 0 0 chr11 33322185 33322215 -88521641 + AT_rich Low_complexity Low_complexity 1 30 0 5 839 401 275 0 0 chr11 33322476 33322556 -88521300 - ID4 SINE ID -2 81 2 5 839 319 194 19 75 chr11 33322564 33322670 -88521186 - PB1 SINE Alu -1 126 27 5 839 21 57 0 0 chr11 33322715 33322750 -88521106 + AT_rich Low_complexity Low_complexity 1 35 0 5 839 240 59 0 0 chr11 33323162 33323196 -88520660 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 839 1138 58 0 0 chr11 33323196 33323334 -88520522 - B1_Mus1 SINE Alu -10 138 1 5 839 401 310 0 9 chr11 33323579 33323693 -88520163 - ID_B1 SINE B4 -5 219 107 5 839 307 286 214 16 chr11 33324776 33325028 -88518828 + L1MA6 LINE L1 5884 6185 -115 5 839 657 220 204 17 chr11 33326220 33326396 -88517460 + B3 SINE B2 3 211 -5 5 839 232 226 0 56 chr11 33326665 33326773 -88517083 + A-rich Low_complexity Low_complexity 2 103 0 5 839 207 0 0 0 chr11 33326773 33326796 -88517060 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 839 225 283 82 52 chr11 33326812 33326909 -88516947 - Lx7 LINE L1 -400 7296 7197 5 839 1060 261 4 12 chr11 33326983 33327235 -88516621 - Lx6 LINE L1 -177 7283 7034 5 839 243 0 0 0 chr11 33327680 33327707 -88516149 + (T)n Simple_repeat Simple_repeat 1 27 0 5 839 21 36 0 0 chr11 33331182 33331210 -88512646 + AT_rich Low_complexity Low_complexity 1 28 0 5 839 208 156 0 0 chr11 33333487 33333519 -88510337 + (TTA)n Simple_repeat Simple_repeat 3 34 0 5 839 22 56 0 0 chr11 33333547 33333583 -88510273 + AT_rich Low_complexity Low_complexity 1 36 0 5 839 492 279 66 38 chr11 33334679 33334999 -88508857 - L1M4 LINE L1 -1348 4798 4470 5 839 1618 32 0 0 chr11 33335000 33335186 -88508670 - B2_Mm1t SINE B2 -6 187 2 5 839 402 277 7 45 chr11 33335260 33335282 -88508574 - L1M4 LINE L1 -1651 4495 4476 5 839 736 192 13 20 chr11 33335282 33335431 -88508425 - B1_Mur4 SINE Alu -1 149 2 5 839 402 277 7 45 chr11 33335431 33335563 -88508293 - L1M4 LINE L1 -1671 4475 4347 5 839 461 328 22 14 chr11 33335613 33335752 -88508104 - B1F SINE Alu -9 140 1 5 839 363 284 176 40 chr11 33335980 33336303 -88507553 - L1M4 LINE L1 -2552 3594 3228 5 839 588 234 7 62 chr11 33336613 33336759 -88507097 - B1_Mur1 SINE Alu -11 138 1 5 839 310 263 206 26 chr11 33336766 33337184 -88506672 - L1M4 LINE L1 -3116 3030 2538 5 839 1023 262 46 21 chr11 33337313 33337594 -88506262 + B4 SINE B4 1 288 -4 5 839 297 0 0 0 chr11 33337609 33337642 -88506214 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 839 396 0 0 0 chr11 33337888 33337932 -88505924 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 839 534 103 0 0 chr11 33337932 33338010 -88505846 + (GA)n Simple_repeat Simple_repeat 2 79 0 5 839 342 138 0 0 chr11 33338988 33339046 -88504810 + (GGA)n Simple_repeat Simple_repeat 3 60 0 5 839 254 125 36 0 chr11 33339382 33339438 -88504418 + T-rich Low_complexity Low_complexity 2 59 0 5 839 23 0 0 0 chr11 33339568 33339591 -88504265 + AT_rich Low_complexity Low_complexity 1 23 0 5 839 480 86 0 0 chr11 33339961 33340031 -88503825 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 5 839 256 296 70 56 chr11 33340358 33340501 -88503355 + MIRb SINE MIR 107 251 -17 5 839 35 24 0 0 chr11 33340600 33340642 -88503214 + AT_rich Low_complexity Low_complexity 1 42 0 5 839 276 291 38 0 chr11 33340870 33340949 -88502907 - ID4 SINE ID -1 82 1 5 839 620 268 176 5 chr11 33341002 33341212 -88502644 - MER2 DNA MER2_type -91 254 9 5 839 21 36 0 0 chr11 33342394 33342422 -88501434 + AT_rich Low_complexity Low_complexity 1 28 0 5 839 474 181 148 40 chr11 33342505 33342633 -88501223 - B1F SINE Alu 0 149 10 5 839 1090 166 21 0 chr11 33342893 33343080 -88500776 + Lx4A LINE L1 6861 7051 -7 5 839 21 0 0 0 chr11 33343080 33343101 -88500755 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 2560 215 19 14 chr11 33343104 33343675 -88500181 + Lx5 LINE L1 6051 6624 -426 5 839 1326 186 24 40 chr11 33343674 33343971 -88499885 + Lx5 LINE L1 6756 7047 -3 5 839 1088 42 0 34 chr11 33345785 33345927 -88497929 + B1_Mus1 SINE Alu 2 139 -9 5 839 186 71 0 0 chr11 33345927 33345955 -88497901 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 839 645 73 0 0 chr11 33346090 33346186 -88497670 - L1_Mus2 LINE L1 -1 6565 6470 5 839 29 0 0 0 chr11 33346439 33346468 -88497388 + AT_rich Low_complexity Low_complexity 1 29 0 5 839 652 298 58 19 chr11 33346575 33346832 -88497024 + B4A SINE B4 3 269 -23 5 839 456 19 0 0 chr11 33346886 33346939 -88496917 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 839 1144 63 0 7 chr11 33346999 33347142 -88496714 + B1_Mm SINE Alu 1 142 -5 5 839 206 261 42 14 chr11 33347142 33347286 -88496570 + A-rich Low_complexity Low_complexity 4 151 0 5 839 300 380 33 0 chr11 33347286 33347436 -88496420 + HAL1-3A_ME LINE L1 2285 2439 -419 5 839 264 393 34 0 chr11 33347442 33347559 -88496297 + polypurine Low_complexity Low_complexity 4 124 0 5 839 357 224 28 33 chr11 33347559 33347739 -88496117 + A-rich Low_complexity Low_complexity 2 180 0 5 839 23 78 0 0 chr11 33347829 33347880 -88495976 + AT_rich Low_complexity Low_complexity 1 51 0 5 839 509 82 0 0 chr11 33347883 33347956 -88495900 + B1_Mus2 SINE Alu 75 147 0 5 839 4209 111 14 0 chr11 33348646 33349287 -88494569 - Lx3B LINE L1 -67 5819 5170 5 839 4188 172 51 9 chr11 33349285 33350327 -88493529 + Lx3B LINE L1 5804 6919 -54 5 839 28 29 0 0 chr11 33350357 33350392 -88493464 + AT_rich Low_complexity Low_complexity 1 35 0 5 839 5685 53 1 4 chr11 33350528 33351232 -88492624 + L1_Mus1 LINE L1 5865 6566 -1 5 839 1106 71 7 0 chr11 33351267 33351408 -88492448 + B1_Mus1 SINE Alu 1 142 -6 5 839 309 51 0 0 chr11 33351410 33351449 -88492407 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 839 1163 67 8 3 chr11 33351476 33351659 -88492197 + B2_Mm2 SINE B2 2 188 -5 5 839 203 289 78 0 chr11 33351814 33351904 -88491952 - MIRb SINE MIR -28 240 144 5 839 231 325 0 46 chr11 33352752 33352839 -88491017 + MIRc SINE MIR 80 162 -106 5 839 348 261 0 0 chr11 33352867 33352932 -88490924 + B1_Mus2 SINE Alu 3 67 -80 5 839 224 200 21 167 chr11 33352943 33353039 -88490817 + PB1D7 SINE Alu 25 106 -14 5 839 296 328 58 3 chr11 33353080 33353206 -88490650 + B1F1 SINE Alu 2 132 -17 5 839 714 291 124 26 chr11 33353417 33353682 -88490174 + B4 SINE B4 2 292 0 5 839 775 206 0 0 chr11 33354013 33354149 -88489707 + B3 SINE B2 71 206 -10 5 839 432 362 94 30 chr11 33354631 33354959 -88488897 + L2 LINE L2 481 829 -2590 5 839 308 246 57 8 chr11 33355000 33355123 -88488733 - L1MB8 LINE L1 -2 6176 6048 5 839 408 296 228 10 chr11 33355194 33355484 -88488372 - L1MB8 LINE L1 -166 6012 5660 5 839 555 301 49 21 chr11 33355510 33356043 -88487813 - L1MB8 LINE L1 -588 5592 5040 5 839 225 344 45 15 chr11 33356274 33356407 -88487449 + L2a LINE L2 3249 3385 -41 5 839 535 236 339 20 chr11 33356814 33357054 -88486802 + ORR1D1 LTR MaLR 3 319 -55 5 839 2020 235 60 13 chr11 33357054 33357602 -88486254 + Lx2B LINE L1 6408 6981 -19 5 839 366 200 24 36 chr11 33357602 33357685 -88486171 + ORR1D1 LTR MaLR 293 374 0 5 839 699 193 71 33 chr11 33357685 33357861 -88485995 - MER82 DNA MER2_type -351 302 120 5 839 290 314 81 40 chr11 33358141 33358265 -88485591 + PB1 SINE Alu 1 113 -14 5 839 431 270 134 59 chr11 33359854 33360212 -88483644 + L1MA9 LINE L1 5879 6263 -49 5 839 656 281 6 42 chr11 33361211 33361378 -88482478 - RSINE1 SINE B4 -2 163 3 5 839 539 249 240 39 chr11 33361526 33361958 -88481898 + L1MC LINE L1 2895 3419 -2727 5 839 293 172 16 0 chr11 33362147 33362211 -88481645 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 839 12208 93 19 14 chr11 33362214 33362286 -88481570 + L1_Mm LINE L1 3968 4038 -1845 5 839 3190 48 2 8 chr11 33362286 33362682 -88481174 + MTA_Mm LTR MaLR 3 396 0 5 839 12208 93 19 14 chr11 33362682 33364512 -88479344 + L1_Mm LINE L1 4039 5880 -3 5 839 1438 48 11 0 chr11 33364512 33364700 -88479156 + MTA_Mm LTR MaLR 207 396 0 5 839 6925 74 5 155 chr11 33364700 33365914 -88477942 + MTA_Mm-int LTR MaLR 1 1049 -49 5 839 1160 49 7 0 chr11 33365914 33366057 -88477799 + B1_Mm SINE Alu 3 146 -1 5 839 6925 74 5 155 chr11 33366057 33366131 -88477725 + MTA_Mm-int LTR MaLR 1050 1096 -2 5 839 3221 53 2 8 chr11 33366133 33366531 -88477325 + MTA_Mm LTR MaLR 1 396 0 5 839 354 335 51 19 chr11 33366728 33367041 -88476815 + L1MC LINE L1 4695 5017 -1129 5 839 1604 47 0 0 chr11 33367097 33367289 -88476567 - B2_Mm1t SINE B2 0 193 2 5 839 534 154 26 60 chr11 33367366 33367483 -88476373 + B1_Mur3 SINE Alu 37 149 0 5 839 249 119 0 0 chr11 33367484 33367526 -88476330 + (A)n Simple_repeat Simple_repeat 1 42 0 5 839 304 286 68 48 chr11 33367684 33367831 -88476025 + L1M5 LINE L1 5355 5504 -675 5 839 182 200 0 41 chr11 33368206 33368279 -88475577 + A-rich Low_complexity Low_complexity 1 70 0 5 839 248 338 86 49 chr11 33368340 33368421 -88475435 + RSINE1 SINE B4 82 165 0 5 839 910 124 7 20 chr11 33368640 33368788 -88475068 + B1_Mus1 SINE Alu 2 147 -1 5 839 240 189 0 19 chr11 33368868 33368922 -88474934 + L1M3de LINE L1 2082 2134 -4519 5 839 604 276 175 12 chr11 33369186 33369432 -88474424 + RMER15 LTR ERVL 289 574 -1 5 839 445 295 96 12 chr11 33369456 33369779 -88474077 + L1_Rod LINE L1 2133 2482 -3365 5 839 327 268 56 7 chr11 33369832 33369975 -88473881 + L1M3de LINE L1 3217 3366 -3363 5 839 2302 191 60 41 chr11 33369984 33370445 -88473411 + RLTR20D LTR ERVK 1 473 -95 5 839 711 0 0 0 chr11 33370445 33370524 -88473332 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 839 2302 205 60 88 chr11 33370524 33370629 -88473227 + RLTR20D LTR ERVK 371 540 -28 5 839 405 0 0 0 chr11 33370629 33370674 -88473182 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 839 634 233 60 178 chr11 33370674 33370767 -88473089 + RLTR20D LTR ERVK 474 567 -1 5 839 727 295 133 26 chr11 33370781 33371370 -88472486 + L1M3de LINE L1 3387 4088 -2638 5 839 684 36 0 0 chr11 33371370 33371453 -88472403 + (GGGA)n Simple_repeat Simple_repeat 4 86 0 5 839 490 281 40 35 chr11 33371453 33371555 -88472301 + L1M3de LINE L1 4062 4179 -2547 5 839 426 304 40 21 chr11 33371569 33371752 -88472104 + B4A SINE B4 6 231 -61 5 839 872 226 84 20 chr11 33371752 33371955 -88471901 + B3 SINE B2 1 216 0 6 839 469 277 106 4 chr11 33372048 33372288 -88471568 + L1M3de LINE L1 4160 4421 -2311 5 839 268 277 150 21 chr11 33372300 33372677 -88471179 + L1_Rod LINE L1 4030 4466 -1677 6 839 233 339 18 24 chr11 33372780 33372949 -88470907 + L1_Rod LINE L1 4511 4678 -1465 6 839 24 0 0 0 chr11 33373203 33373227 -88470629 + AT_rich Low_complexity Low_complexity 1 24 0 6 839 1031 96 0 33 chr11 33374211 33374362 -88469494 + B1_Mus1 SINE Alu 2 147 -1 6 839 296 0 51 0 chr11 33374375 33374414 -88469442 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 6 839 522 112 25 0 chr11 33374741 33374821 -88469035 - B1_Mus2 SINE Alu -65 82 1 6 839 1126 63 35 0 chr11 33375213 33375356 -88468500 + B1_Mus1 SINE Alu 1 148 0 6 839 340 285 45 23 chr11 33375363 33375435 -88468421 + L1MD LINE L1 4183 4259 -1887 6 839 252 0 0 0 chr11 33375435 33375463 -88468393 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 839 340 285 45 23 chr11 33375463 33375523 -88468333 + L1MD LINE L1 4260 4317 -1829 6 839 1165 43 14 0 chr11 33375605 33375744 -88468112 - B1_Mm SINE Alu -6 141 1 6 839 375 302 31 23 chr11 33375776 33375905 -88467951 + ID_B1 SINE B4 87 216 -8 6 839 325 332 32 69 chr11 33375915 33376153 -88467703 + L1MD LINE L1 4397 4628 -1518 6 839 356 331 67 13 chr11 33376163 33376313 -88467543 + RSINE1 SINE B4 8 165 0 6 839 24 0 0 0 chr11 33376313 33376337 -88467519 + AT_rich Low_complexity Low_complexity 1 24 0 6 839 285 286 151 27 chr11 33376342 33376601 -88467255 + L1M5 LINE L1 4629 4919 -1227 6 839 220 367 27 54 chr11 33376733 33376880 -88466976 - B1F1 SINE Alu 0 149 7 6 839 234 200 0 0 chr11 33376885 33376940 -88466916 + L1MD LINE L1 4978 5032 -1114 6 839 619 209 196 0 chr11 33377166 33377324 -88466532 - B3 SINE B2 -5 211 23 6 839 1094 268 113 45 chr11 33377334 33378075 -88465781 + L1ME1 LINE L1 5328 6119 -60 6 839 705 304 31 5 chr11 33378448 33378643 -88465213 - ID_B1 SINE B4 -23 201 2 6 839 198 71 0 0 chr11 33379039 33379067 -88464789 + (A)n Simple_repeat Simple_repeat 1 28 0 6 839 27 49 0 0 chr11 33380247 33380288 -88463568 + AT_rich Low_complexity Low_complexity 1 41 0 6 839 908 47 128 30 chr11 33381309 33381442 -88462414 + B1_Mm SINE Alu 2 147 0 6 839 197 307 124 32 chr11 33381728 33381913 -88461943 + MIRb SINE MIR 27 228 -40 6 839 217 225 99 12 chr11 33382776 33382857 -88460999 + PB1D10 SINE Alu 30 117 0 6 839 243 0 0 0 chr11 33383186 33383213 -88460643 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 6 839 550 214 111 0 chr11 33383221 33383347 -88460509 - B1_Mur3 SINE Alu -9 140 1 6 839 699 102 380 0 chr11 33383588 33383725 -88460131 + B2_Mm2 SINE B2 1 189 -6 6 839 216 0 0 0 chr11 33384035 33384059 -88459797 + (A)n Simple_repeat Simple_repeat 1 24 0 6 839 479 340 94 4 chr11 33384506 33384772 -88459084 - HAL1 LINE L1 -1131 1376 1087 6 839 1214 35 0 0 chr11 33384860 33385005 -88458851 + B1_Mus2 SINE Alu 1 145 -2 6 839 219 36 0 0 chr11 33385005 33385033 -88458823 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 6 839 192 77 0 0 chr11 33385352 33385378 -88458478 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 839 679 147 86 29 chr11 33386296 33386436 -88457420 + B1_Mur3 SINE Alu 2 149 0 6 839 289 250 42 0 chr11 33387029 33387101 -88456755 + MER46C DNA MER2_type 264 338 0 6 839 1137 75 0 0 chr11 33388206 33388353 -88455503 + B1_Mm SINE Alu 1 147 0 6 839 198 0 0 0 chr11 33388353 33388375 -88455481 + (A)n Simple_repeat Simple_repeat 1 22 0 6 839 243 0 0 0 chr11 33388431 33388458 -88455398 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 6 839 748 166 20 40 chr11 33388458 33388609 -88455247 - B1_Mur2 SINE Alu 0 149 2 6 839 204 96 75 19 chr11 33388753 33388806 -88455050 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 839 432 0 0 0 chr11 33388944 33388992 -88454864 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 6 839 1221 48 0 13 chr11 33389095 33389244 -88454612 + B1_Mus1 SINE Alu 2 148 0 6 839 581 309 27 53 chr11 33389252 33389457 -88454399 + L1MC4 LINE L1 7369 7575 -467 6 839 2189 169 58 2 chr11 33389457 33389855 -88454001 + MTC LTR MaLR 1 420 -1 6 839 581 309 27 53 chr11 33389855 33389912 -88453944 + L1MC4 LINE L1 7576 7624 -418 6 839 201 147 0 0 chr11 33392381 33392415 -88451441 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 6 839 399 239 41 41 chr11 33392424 33392546 -88451310 - B4A SINE B4 -169 123 2 6 839 391 316 96 94 chr11 33393557 33393952 -88449904 + Tigger9b DNA MER2_type 13 408 -216 6 839 334 333 83 54 chr11 33394471 33394755 -88449101 + L1MB7 LINE L1 5494 5796 -388 6 839 960 123 200 6 chr11 33394755 33394935 -88448921 + B3 SINE B2 1 215 -1 6 839 334 333 83 54 chr11 33394935 33395110 -88448746 + L1MB7 LINE L1 5797 5965 -219 6 839 710 92 233 0 chr11 33395964 33396084 -88447772 - B1_Mus1 SINE Alu 0 148 1 6 839 821 239 71 0 chr11 33396135 33396332 -88447524 - ID_B1 SINE B4 -11 213 3 6 839 433 284 162 0 chr11 33396416 33396613 -88447243 - Tigger5 DNA MER2_type -2164 242 14 6 839 1180 176 143 67 chr11 33397110 33397160 -88446696 + ORR1B1 LTR MaLR 41 88 -306 6 839 4921 100 77 91 chr11 33397160 33397578 -88446278 - RLTR13B1 LTR ERVK 0 893 476 6 839 324 48 0 0 chr11 33397578 33397620 -88446236 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 839 4921 100 77 91 chr11 33397620 33398106 -88445750 - RLTR13B1 LTR ERVK -418 475 1 6 839 1180 176 143 67 chr11 33398106 33398134 -88445722 + ORR1B1 LTR MaLR 89 100 -294 6 839 1362 102 16 0 chr11 33398134 33398321 -88445535 + B2_Mm2 SINE B2 1 190 -5 6 839 1180 176 143 67 chr11 33398321 33398570 -88445286 + ORR1B1 LTR MaLR 101 394 0 6 839 314 150 48 48 chr11 33398579 33398642 -88445214 + L1MC1 LINE L1 3512 3574 -2566 6 839 248 232 14 14 chr11 33398720 33398790 -88445066 - ID4_ SINE ID -13 70 1 6 839 760 264 160 22 chr11 33398794 33399200 -88444656 + L1MC1 LINE L1 3649 4110 -2036 6 839 643 204 223 40 chr11 33399353 33399649 -88444207 + L1MC1 LINE L1 5696 6045 -288 6 839 22 0 0 0 chr11 33399809 33399831 -88444025 + AT_rich Low_complexity Low_complexity 1 22 0 6 839 259 328 63 8 chr11 33400286 33400412 -88443444 + MIR SINE MIR 18 150 -112 6 839 40 21 0 0 chr11 33400468 33400515 -88443341 + AT_rich Low_complexity Low_complexity 1 47 0 6 839 25 51 0 0 chr11 33400628 33400667 -88443189 + AT_rich Low_complexity Low_complexity 1 39 0 6 839 225 0 0 0 chr11 33401505 33401530 -88442326 + (A)n Simple_repeat Simple_repeat 1 25 0 6 839 888 297 149 47 chr11 33401540 33401596 -88442260 + Cheshire DNA MER1_type 57 105 -2315 6 839 1137 76 7 0 chr11 33401596 33401741 -88442115 + B1_Mm SINE Alu 2 147 0 6 839 888 297 149 47 chr11 33401741 33402476 -88441380 + Cheshire DNA MER1_type 106 929 -1491 6 839 189 107 0 0 chr11 33402503 33402531 -88441325 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 6 839 2912 62 43 3 chr11 33402539 33402914 -88440942 - L1_Mus2 LINE L1 -1 6565 6176 6 839 905 52 0 0 chr11 33402915 33403031 -88440825 + L1_Mus2 LINE L1 6057 6172 -394 6 839 302 282 53 26 chr11 33403107 33403220 -88440636 + Cheshire DNA MER1_type 997 1112 -1308 6 839 468 235 15 22 chr11 33403411 33403546 -88440310 + Cheshire DNA MER1_type 1827 1960 -460 6 839 564 248 16 8 chr11 33403686 33403812 -88440044 + B1_Mur1 SINE Alu 17 143 -6 6 839 607 244 182 35 chr11 33403811 33404096 -88439760 + Cheshire DNA MER1_type 2093 2419 -1 6 839 389 205 26 0 chr11 33404356 33404434 -88439422 + ID4 SINE ID 2 81 -2 6 839 1581 42 0 15 chr11 33405947 33406142 -88437714 + B2_Mm1t SINE B2 2 193 0 6 839 387 244 22 0 chr11 33406480 33406570 -88437286 + PB1D10 SINE Alu 5 96 -21 6 839 403 274 153 35 chr11 33406936 33407197 -88436659 + MLT1C LTR MaLR 174 465 -2 6 839 1319 68 0 33 chr11 33407216 33407391 -88436465 + B2_Mm2 SINE B2 2 170 -25 6 839 378 107 0 0 chr11 33407391 33407447 -88436409 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 839 283 139 241 0 chr11 33407617 33407696 -88436160 - MMAR1 DNA Mariner 0 1286 1189 6 839 255 57 0 0 chr11 33407697 33407713 -88436143 + (A)n Simple_repeat Simple_repeat 1 16 0 6 839 1135 82 0 0 chr11 33407713 33407860 -88435996 + B1_Mus1 SINE Alu 2 148 0 6 839 255 57 0 0 chr11 33407860 33407878 -88435978 + (A)n Simple_repeat Simple_repeat 1 18 0 6 839 1464 240 69 51 chr11 33407883 33408331 -88435525 - MMAR1 DNA Mariner -238 1048 593 6 839 1204 48 0 0 chr11 33408369 33408516 -88435340 + B1_Mus2 SINE Alu 1 147 0 6 839 1192 68 0 0 chr11 33408662 33408809 -88435047 - B1_Mm SINE Alu 0 147 1 6 839 923 213 65 218 chr11 33408809 33409397 -88434459 - MMAR1 DNA Mariner -784 502 5 6 839 1676 100 130 30 chr11 33409397 33409696 -88434160 - ORR1A4 LTR MaLR 0 329 1 6 839 21 0 0 0 chr11 33410304 33410325 -88433531 + AT_rich Low_complexity Low_complexity 1 21 0 6 839 236 336 14 99 chr11 33410694 33410774 -88433082 + MER77 LTR ERVL 474 552 -55 6 839 625 164 94 29 chr11 33410774 33410912 -88432944 - B1_Mur3 SINE Alu -1 148 2 6 839 236 336 14 99 chr11 33410912 33410973 -88432883 + MER77 LTR ERVL 553 603 -4 6 839 1668 26 5 0 chr11 33411177 33411368 -88432488 + B2_Mm1t SINE B2 2 193 0 6 839 1191 43 0 0 chr11 33411382 33411521 -88432335 + B1_Mus1 SINE Alu 3 141 -7 6 839 217 158 51 34 chr11 33412524 33412583 -88431273 + A-rich Low_complexity Low_complexity 2 61 0 6 839 21 36 0 0 chr11 33413674 33413702 -88430154 + GC_rich Low_complexity Low_complexity 1 28 0 6 839 226 261 239 0 chr11 33414128 33414220 -88429636 + B3A SINE B2 74 187 -11 6 839 896 283 96 81 chr11 33414575 33414719 -88429137 - L1MEg LINE L1 -4532 1552 1412 6 839 1126 43 50 0 chr11 33414719 33414859 -88428997 - B1_Mm SINE Alu 0 147 1 6 839 896 283 96 81 chr11 33414859 33415191 -88428665 - L1MEg LINE L1 -4673 1411 1068 6 839 1211 127 26 0 chr11 33415191 33415380 -88428476 - B2_Mm2 SINE B2 -1 194 1 6 839 896 283 96 81 chr11 33415380 33415494 -88428362 - L1MEg LINE L1 -5017 1067 942 6 839 324 0 0 0 chr11 33415494 33415530 -88428326 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 839 896 283 96 81 chr11 33415530 33415648 -88428208 - L1MEg LINE L1 -5143 941 839 6 839 1114 99 87 6 chr11 33415648 33415820 -88428036 - B2_Mm2 SINE B2 -9 186 1 6 839 896 283 96 81 chr11 33415820 33416104 -88427752 - L1MEg LINE L1 -5246 838 542 6 839 719 167 86 14 chr11 33416493 33416633 -88427223 + B1_Mur4 SINE Alu 1 150 0 6 839 1174 67 114 6 chr11 33417156 33417322 -88426534 - B2_Mm2 SINE B2 -9 186 3 6 839 233 295 0 16 chr11 33417412 33417474 -88426382 - RSINE1 SINE B4 -18 147 87 6 839 600 246 14 7 chr11 33417783 33417922 -88425934 - B1_Mus2 SINE Alu -6 141 2 6 839 251 54 27 0 chr11 33417953 33417990 -88425866 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 839 1158 82 0 0 chr11 33417990 33418137 -88425719 - B1_Mus2 SINE Alu 0 147 1 6 839 3801 122 122 26 chr11 33418768 33419346 -88424510 + RMER6A LTR ERVK 1 645 -111 6 839 1148 63 0 0 chr11 33419346 33419488 -88424368 + B1_Mus1 SINE Alu 2 143 -5 6 839 3801 122 122 26 chr11 33419488 33419597 -88424259 + RMER6A LTR ERVK 646 754 -2 6 839 1160 47 0 51 chr11 33420093 33420249 -88423607 - B1_Mus1 SINE Alu 0 148 1 7 839 26 50 0 0 chr11 33420464 33420504 -88423352 + AT_rich Low_complexity Low_complexity 1 40 0 7 839 1147 50 7 0 chr11 33420729 33420869 -88422987 + B1_Mus2 SINE Alu 1 141 -6 7 839 534 31 0 0 chr11 33420871 33420935 -88422921 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 7 839 1000 90 26 0 chr11 33421550 33421706 -88422150 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 7 839 505 160 0 41 chr11 33421799 33421897 -88421959 + RLTR18 LTR ERVK 1 94 -522 7 839 1607 138 85 52 chr11 33421902 33422209 -88421647 + RMER1B Other Other 750 1066 0 7 839 1853 185 82 87 chr11 33422227 33422513 -88421343 + RLTR18 LTR ERVK 92 374 -242 7 839 831 127 271 0 chr11 33422513 33422679 -88421177 - B3 SINE B2 -2 214 4 7 839 1853 185 82 87 chr11 33422679 33422907 -88420949 + RLTR18 LTR ERVK 375 603 -13 7 840 551 180 18 0 chr11 33423571 33423682 -88420174 + B1_Mus1 SINE Alu 36 148 0 7 840 1117 56 35 0 chr11 33423844 33423986 -88419870 + B1_Mus2 SINE Alu 1 147 0 7 840 207 0 0 0 chr11 33423994 33424017 -88419839 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 840 732 94 128 135 chr11 33424170 33424268 -88419588 - B1_Mus2 SINE Alu 0 147 65 7 840 1484 53 16 5 chr11 33424268 33424458 -88419398 + B2_Mm1t SINE B2 1 192 -1 7 840 732 94 128 135 chr11 33424458 33424507 -88419349 - B1_Mus2 SINE Alu -83 64 1 7 840 693 114 0 0 chr11 33425409 33425514 -88418342 + (TG)n Simple_repeat Simple_repeat 1 105 0 7 840 191 146 21 0 chr11 33425514 33425549 -88418307 + GA-rich Low_complexity Low_complexity 2 37 0 7 840 312 27 0 0 chr11 33425549 33425586 -88418270 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 840 191 146 21 0 chr11 33425586 33425598 -88418258 + polypurine Low_complexity Low_complexity 38 49 0 7 840 204 218 0 35 chr11 33426126 33426183 -88417673 + T-rich Low_complexity Low_complexity 4 58 0 7 840 31 26 0 0 chr11 33427248 33427286 -88416570 + AT_rich Low_complexity Low_complexity 1 38 0 7 840 7175 55 24 8 chr11 33427693 33428607 -88415249 - RLTR13B3 LTR ERVK 0 929 1 7 840 207 0 0 0 chr11 33429830 33429853 -88414003 + (TCCCC)n Simple_repeat Simple_repeat 2 24 0 7 840 233 309 88 67 chr11 33429890 33430069 -88413787 - MIR3 SINE MIR -75 187 6 7 840 769 199 20 0 chr11 33430719 33430865 -88412991 + B1_Mur4 SINE Alu 2 150 0 7 840 186 375 26 18 chr11 33431152 33431266 -88412590 - MIRc SINE MIR -99 169 55 7 840 30 27 0 0 chr11 33432087 33432124 -88411732 + AT_rich Low_complexity Low_complexity 1 37 0 7 840 977 99 7 0 chr11 33433041 33433182 -88410674 - B1_Mus1 SINE Alu 0 148 7 7 840 297 174 294 0 chr11 33433271 33433363 -88410493 - B3 SINE B2 -96 120 2 7 840 403 282 112 32 chr11 33433466 33433653 -88410203 + Tigger7 DNA MER2_type 2256 2457 -34 7 840 456 225 158 42 chr11 33433683 33433901 -88409955 + RMER10A LTR ERVL 101 351 -91 7 840 1177 62 0 0 chr11 33433901 33434045 -88409811 - B1_Mm SINE Alu 0 147 4 7 840 456 225 158 42 chr11 33434045 33434086 -88409770 + RMER10A LTR ERVL 352 390 -52 7 840 292 322 16 34 chr11 33434413 33434554 -88409302 + MIR SINE MIR 104 240 -28 7 840 410 19 0 36 chr11 33434566 33434622 -88409234 + (TAA)n Simple_repeat Simple_repeat 3 56 0 7 840 981 95 109 166 chr11 33434643 33434908 -88408948 + ORR1B1 LTR MaLR 100 349 -45 7 840 1097 38 30 0 chr11 33434908 33435040 -88408816 + B1_Mm SINE Alu 1 136 -11 7 840 246 32 0 0 chr11 33435040 33435071 -88408785 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 840 805 69 28 0 chr11 33435085 33435230 -88408626 + RMER17B LTR ERVK 312 460 -498 7 840 243 0 0 0 chr11 33435234 33435261 -88408595 + (A)n Simple_repeat Simple_repeat 1 27 0 7 840 1078 83 0 40 chr11 33435262 33435413 -88408443 + B1_Mus2 SINE Alu 1 145 -2 7 840 1011 101 138 29 chr11 33435432 33435606 -88408250 + B2_Mm2 SINE B2 2 194 -1 7 840 348 107 0 67 chr11 33435620 33435680 -88408176 + ORR1A4 LTR MaLR 274 329 0 7 840 243 0 0 0 chr11 33435684 33435711 -88408145 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 840 288 0 0 0 chr11 33435711 33435742 -88408114 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 840 1715 91 122 3 chr11 33437053 33437340 -88406516 - ORR1A4 LTR MaLR -8 321 1 7 840 769 287 40 5 chr11 33438209 33438433 -88405423 + MLT1B LTR MaLR 38 269 -121 7 840 862 227 177 38 chr11 33438467 33438813 -88405043 - MTEa LTR MaLR -10 369 1 7 840 305 183 0 177 chr11 33438813 33438905 -88404951 - MTEa LTR MaLR -307 72 1 7 840 306 211 70 0 chr11 33438916 33438987 -88404869 + MLT1B LTR MaLR 309 384 -6 7 840 425 263 0 10 chr11 33439201 33439297 -88404559 - B3A SINE B2 -88 110 16 7 840 664 35 0 0 chr11 33439809 33439894 -88403962 - L1Md_T LINE L1 0 6582 6498 7 840 254 196 218 40 chr11 33440232 33440333 -88403523 + MT2B LTR ERVL 139 257 -344 7 840 557 172 190 0 chr11 33440256 33440372 -88403484 + B1_Mur2 SINE Alu 6 143 -6 7 840 263 304 105 18 chr11 33441459 33441630 -88402226 + MIRb SINE MIR 46 231 -37 7 840 278 24 0 0 chr11 33442071 33442112 -88401744 - B1_Mur4 SINE Alu 0 150 110 7 840 351 279 16 16 chr11 33442810 33442934 -88400922 - MIRc SINE MIR -39 229 106 7 840 417 266 59 59 chr11 33443704 33443908 -88399948 + ID_B1 SINE B4 19 222 -2 7 840 792 106 16 24 chr11 33443785 33443911 -88399945 + B1_Mus1 SINE Alu 22 146 -2 7 840 297 153 0 45 chr11 33444024 33444113 -88399743 + C-rich Low_complexity Low_complexity 6 90 0 7 840 423 119 0 0 chr11 33444644 33444711 -88399145 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 840 656 12 12 0 chr11 33444720 33444801 -88399055 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 840 1637 37 5 0 chr11 33444832 33445023 -88398833 + B2_Mm1t SINE B2 2 193 0 7 840 815 165 224 52 chr11 33445161 33445283 -88398573 + URR1B DNA MER1_type 1 159 -66 7 840 3406 43 2 0 chr11 33445283 33445678 -88398178 - MTA_Mm LTR MaLR 0 396 1 7 840 815 165 224 52 chr11 33445678 33445747 -88398109 + URR1B DNA MER1_type 160 225 0 7 840 765 291 150 7 chr11 33445790 33445830 -88398026 - MER68 LTR ERVL -47 516 477 7 840 276 30 0 0 chr11 33445830 33445863 -88397993 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 840 180 0 0 0 chr11 33445863 33445882 -88397974 + (GA)n Simple_repeat Simple_repeat 2 21 0 7 840 765 291 150 7 chr11 33445882 33446113 -88397743 - MER68 LTR ERVL -87 476 206 7 840 1253 41 0 7 chr11 33446314 33446462 -88397394 - B1_Mus2 SINE Alu 0 147 1 7 840 289 253 39 69 chr11 33446530 33446632 -88397224 + B3A SINE B2 99 197 -1 7 840 712 168 323 0 chr11 33446745 33446906 -88396950 - B3 SINE B2 -3 213 1 7 840 518 215 18 27 chr11 33446907 33447017 -88396839 - ORR1E LTR MaLR -248 111 3 7 840 599 236 150 121 chr11 33447035 33447113 -88396743 - B4A SINE B4 -8 284 231 7 840 1146 62 14 0 chr11 33447113 33447258 -88396598 - B1_Mm SINE Alu 0 147 1 7 840 599 236 150 121 chr11 33447258 33447386 -88396470 - B4A SINE B4 -62 230 72 7 840 587 268 121 38 chr11 33447453 33447693 -88396163 - B4A SINE B4 0 292 33 7 840 25 0 0 0 chr11 33448571 33448596 -88395260 + AT_rich Low_complexity Low_complexity 1 25 0 7 840 502 167 33 0 chr11 33448723 33448813 -88395043 - B1F2 SINE Alu 0 149 57 7 840 362 263 35 9 chr11 33448813 33448838 -88395018 - ID_B1 SINE B4 0 224 107 7 840 852 126 35 7 chr11 33448880 33449024 -88394832 - B1_Mur3 SINE Alu -1 148 1 7 840 674 278 48 5 chr11 33449030 33449236 -88394620 - B3 SINE B2 -1 215 1 7 840 39 60 0 0 chr11 33449236 33449303 -88394553 + AT_rich Low_complexity Low_complexity 1 67 0 7 840 339 25 0 0 chr11 33449380 33449420 -88394436 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 7 840 810 134 8 23 chr11 33449420 33449550 -88394306 - B1_Mur3 SINE Alu -9 140 13 7 840 867 162 216 0 chr11 33450280 33450465 -88393391 + URR1B DNA MER1_type 1 225 0 7 840 28 29 0 0 chr11 33450856 33450891 -88392965 + AT_rich Low_complexity Low_complexity 1 35 0 7 840 198 398 73 34 chr11 33452927 33453104 -88390752 + MIRb SINE MIR 49 232 -36 7 840 338 297 158 58 chr11 33453888 33454199 -88389657 + Charlie22a DNA MER1_type 149 490 -1 7 840 229 0 83 0 chr11 33455469 33455505 -88388351 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 840 1045 88 0 0 chr11 33455505 33455642 -88388214 - B1_Mus2 SINE Alu -9 138 2 7 840 1141 208 26 84 chr11 33455753 33456063 -88387793 - B4 SINE B4 0 292 1 7 840 807 161 0 0 chr11 33456760 33456884 -88386972 - B3 SINE B2 -92 124 1 7 840 821 263 162 51 chr11 33457991 33458302 -88385554 + L1ME2 LINE L1 5355 5691 -473 7 840 1616 151 292 19 chr11 33458302 33458720 -88385136 + RMER16 LTR ERVK 2 533 0 7 840 821 274 151 47 chr11 33458720 33459119 -88384737 + L1ME2 LINE L1 5692 6137 -41 7 840 794 177 0 34 chr11 33459122 33459268 -88384588 + B1_Mus1 SINE Alu 3 143 -5 7 840 315 285 177 20 chr11 33459715 33459862 -88383994 - HAL1-3A_ME LINE L1 -405 2453 2284 7 840 243 0 0 0 chr11 33459862 33459889 -88383967 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 7 840 1108 64 43 0 chr11 33459889 33460030 -88383826 - B1_Mus1 SINE Alu -1 147 1 7 840 219 36 0 0 chr11 33460139 33460167 -88383689 + (TTG)n Simple_repeat Simple_repeat 2 29 0 7 840 235 204 19 0 chr11 33460901 33460955 -88382901 - BC1_Mm scRNA scRNA -67 85 31 7 840 1691 31 0 0 chr11 33462104 33462297 -88381559 - B2_Mm1a SINE B2 0 193 1 7 840 401 352 96 30 chr11 33463419 33463586 -88380270 - MER58A DNA MER1_type -42 182 5 7 840 285 151 0 0 chr11 33463950 33464003 -88379853 + A-rich Low_complexity Low_complexity 1 53 0 7 840 598 217 83 0 chr11 33464319 33464439 -88379417 - B3 SINE B2 -86 130 1 7 840 223 193 0 17 chr11 33464553 33464611 -88379245 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 7 840 581 295 5 31 chr11 33464653 33464849 -88379007 - Lx7 LINE L1 -367 7329 7139 7 840 386 317 82 14 chr11 33465245 33465392 -88378464 - MIRb SINE MIR -26 242 86 8 840 207 0 0 0 chr11 33466114 33466137 -88377719 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 840 208 222 0 36 chr11 33466200 33466256 -88377600 + (TATG)n Simple_repeat Simple_repeat 1 54 0 8 840 821 323 43 36 chr11 33466272 33466290 -88377566 - B4A SINE B4 -2 290 276 8 840 456 35 0 0 chr11 33466290 33466348 -88377508 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 840 821 323 43 36 chr11 33466348 33466608 -88377248 - B4A SINE B4 -17 275 10 8 840 505 269 98 40 chr11 33466625 33466799 -88377057 - B4 SINE B4 -68 224 41 8 840 23 0 0 0 chr11 33468332 33468355 -88375501 + AT_rich Low_complexity Low_complexity 1 23 0 8 840 534 272 76 98 chr11 33468541 33468777 -88375079 - B4A SINE B4 -60 232 2 8 840 1418 79 11 0 chr11 33468826 33469015 -88374841 - B2_Mm1t SINE B2 -1 192 2 8 840 180 293 145 13 chr11 33469414 33469490 -88374366 + MIRb SINE MIR 21 106 -162 8 840 267 103 0 0 chr11 33469766 33469805 -88374051 + (TC)n Simple_repeat Simple_repeat 1 39 0 8 840 495 115 53 15 chr11 33469833 33469965 -88373891 + GA-rich Low_complexity Low_complexity 1 137 0 8 840 348 331 104 55 chr11 33470064 33470246 -88373610 + MLT1A1 LTR MaLR 23 213 -195 8 840 274 222 0 0 chr11 33470300 33470354 -88373502 + MLT1A1 LTR MaLR 342 395 -13 8 840 304 323 101 95 chr11 33471170 33471516 -88372340 + LTR16B2 LTR ERVL 27 374 -88 8 840 770 267 61 98 chr11 33472757 33473052 -88370804 - B4A SINE B4 -2 290 7 8 840 261 0 0 0 chr11 33473079 33473108 -88370748 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 840 1356 99 5 5 chr11 33473763 33473956 -88369900 - B2_Mm1a SINE B2 0 193 1 8 840 1182 90 18 0 chr11 33474682 33474848 -88369008 - B2_Mm2 SINE B2 0 195 27 8 840 1119 68 0 14 chr11 33474844 33474992 -88368864 - B1_Mus2 SINE Alu 0 147 2 8 840 474 201 55 110 chr11 33474992 33475026 -88368830 - MT2B LTR ERVL -448 153 128 8 840 300 73 0 0 chr11 33474992 33475033 -88368823 - B2_Mm2 SINE B2 -154 41 1 8 840 1295 155 14 14 chr11 33475053 33475269 -88368587 - B3 SINE B2 0 216 1 8 840 243 88 0 0 chr11 33475386 33475420 -88368436 + (A)n Simple_repeat Simple_repeat 1 34 0 8 840 311 318 60 28 chr11 33475698 33475903 -88367953 - MIRm SINE MIR -6 262 48 8 840 1292 106 5 16 chr11 33476715 33476906 -88366950 + B2_Mm2 SINE B2 2 190 -5 8 840 1246 34 7 0 chr11 33477530 33477676 -88366180 + B1_Mus1 SINE Alu 1 147 -1 8 840 216 0 0 0 chr11 33477676 33477700 -88366156 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 840 183 204 59 39 chr11 33478097 33478148 -88365708 + MIRc SINE MIR 102 153 -115 8 840 201 39 0 0 chr11 33478700 33478726 -88365130 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 8 840 917 213 192 85 chr11 33480389 33480570 -88363286 - MTD LTR MaLR -14 405 197 8 840 222 37 0 0 chr11 33480570 33480597 -88363259 + (CTG)n Simple_repeat Simple_repeat 2 28 0 8 840 1436 34 0 6 chr11 33480597 33480775 -88363081 + (TTC)n Simple_repeat Simple_repeat 3 180 0 8 840 746 82 0 18 chr11 33480777 33480889 -88362967 + (TTCTCC)n Simple_repeat Simple_repeat 5 114 0 8 840 917 213 192 85 chr11 33480889 33481057 -88362799 - MTD LTR MaLR -223 196 15 8 840 356 0 0 22 chr11 33481311 33481356 -88362500 + (TTA)n Simple_repeat Simple_repeat 1 44 0 8 840 1321 98 11 5 chr11 33481396 33481581 -88362275 - B2_Mm2 SINE B2 -9 186 1 8 840 1206 55 7 0 chr11 33481624 33481770 -88362086 - B1_Mm SINE Alu 0 147 1 8 840 231 61 0 0 chr11 33482199 33482232 -88361624 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 8 840 593 219 116 58 chr11 33482342 33482497 -88361359 - RSINE1 SINE B4 0 165 2 8 840 310 217 87 0 chr11 33482790 33482859 -88360997 + ID4 SINE ID 5 79 -4 8 840 225 163 0 0 chr11 33482859 33482908 -88360948 + (CCAA)n Simple_repeat Simple_repeat 4 52 0 8 840 236 310 0 0 chr11 33483025 33483083 -88360773 + polypyrimidine Low_complexity Low_complexity 5 62 0 8 840 371 39 39 0 chr11 33483141 33483193 -88360663 + (CATA)n Simple_repeat Simple_repeat 4 57 0 8 840 587 146 7 0 chr11 33483847 33483991 -88359865 + (CAGA)n Simple_repeat Simple_repeat 2 146 0 8 840 186 98 98 0 chr11 33483979 33484040 -88359816 + (CTCA)n Simple_repeat Simple_repeat 4 70 0 8 840 365 339 46 0 chr11 33485044 33485174 -88358682 - MER58A DNA MER1_type -88 136 1 8 840 355 141 0 25 chr11 33485339 33485419 -88358437 + (TA)n Simple_repeat Simple_repeat 2 79 0 8 840 201 121 0 0 chr11 33485421 33485454 -88358402 + (TAGA)n Simple_repeat Simple_repeat 3 35 0 8 840 1084 262 41 55 chr11 33486056 33486419 -88357437 - MTEa LTR MaLR -21 358 1 8 840 677 293 50 10 chr11 33486674 33486874 -88356982 - MER58A DNA MER1_type -6 218 11 8 840 297 0 0 0 chr11 33487548 33487581 -88356275 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 8 840 279 281 75 47 chr11 33487639 33487909 -88355947 + L1M2 LINE L1 5144 5429 -744 8 840 2487 119 19 0 chr11 33487938 33488317 -88355539 + ORR1B1 LTR MaLR 1 386 -8 8 840 455 211 16 20 chr11 33488321 33488433 -88355423 + L1M2 LINE L1 5504 5620 -558 8 840 294 98 0 0 chr11 33488450 33488501 -88355355 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 8 840 1782 178 19 16 chr11 33488519 33488828 -88355028 - MTC LTR MaLR -8 413 104 8 840 277 197 26 13 chr11 33488887 33488964 -88354892 - L1MB3 LINE L1 -9 6171 6094 8 840 1288 102 11 0 chr11 33488966 33489143 -88354713 + B2_Mm1t SINE B2 1 179 -14 8 840 398 92 0 12 chr11 33489175 33489282 -88354574 + B2_Mm2 SINE B2 47 188 -7 8 840 578 269 141 1 chr11 33489380 33489675 -88354181 - L1MB3 LINE L1 -216 5967 5635 8 840 409 323 145 90 chr11 33490545 33490855 -88353001 - MLT1A LTR MaLR -16 358 23 8 840 312 219 248 0 chr11 33491062 33491167 -88352689 + RMER15 LTR ERVL 445 575 0 8 840 2157 73 5 146 chr11 33491677 33491742 -88352114 - ORR1A2 LTR MaLR -8 319 288 8 840 1201 68 0 0 chr11 33491742 33491888 -88351968 - B1_Mus2 SINE Alu 0 147 2 8 840 2157 73 5 146 chr11 33491888 33492193 -88351663 - ORR1A2 LTR MaLR -40 287 1 8 840 360 176 0 0 chr11 33492197 33492265 -88351591 + GA-rich Low_complexity Low_complexity 2 69 0 8 840 1771 110 60 66 chr11 33493745 33494077 -88349779 - Lx LINE L1 0 6654 6325 8 840 201 176 0 0 chr11 33494113 33494147 -88349709 + T-rich Low_complexity Low_complexity 1 34 0 8 840 461 136 9 46 chr11 33494158 33494266 -88349590 - Lx2A1 LINE L1 0 7008 6905 8 840 230 299 38 85 chr11 33494368 33494474 -88349382 + MER20 DNA MER1_type 1 101 -118 8 840 660 98 39 28 chr11 33494917 33495095 -88348761 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 840 402 338 14 22 chr11 33497112 33497251 -88346605 + MIR SINE MIR 57 194 -68 8 840 191 377 28 19 chr11 33497595 33497703 -88346153 - MIRc SINE MIR -25 243 135 8 840 990 265 108 82 chr11 33498893 33499366 -88344490 - MER31A LTR ERV1 0 485 1 8 840 432 51 0 0 chr11 33499510 33499569 -88344287 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 840 366 297 9 26 chr11 33502219 33502333 -88341523 + C-rich Low_complexity Low_complexity 6 117 0 1 840 255 61 0 0 chr11 33502478 33502511 -88341345 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 840 684 93 0 0 chr11 33502633 33502730 -88341126 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 3 840 255 61 0 0 chr11 33502904 33502937 -88340919 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 840 576 0 0 0 chr11 33503059 33503123 -88340733 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 5 840 1015 37 15 7 chr11 33503125 33503261 -88340595 + (TCCC)n Simple_repeat Simple_repeat 4 140 0 6 840 1091 124 6 0 chr11 33503866 33504043 -88339813 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 840 493 55 14 14 chr11 33504043 33504117 -88339739 + (TCC)n Simple_repeat Simple_repeat 1 74 0 8 840 672 36 0 0 chr11 33504443 33504526 -88339330 + (CA)n Simple_repeat Simple_repeat 1 83 0 9 840 2913 265 75 41 chr11 33504543 33505491 -88338365 - Lx7 LINE L1 -385 7311 6332 1 840 434 311 86 48 chr11 33505636 33505822 -88338034 - LTR40b LTR ERVL -207 255 63 1 840 656 127 0 9 chr11 33505942 33505992 -88337864 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 1 840 1200 111 0 0 chr11 33505992 33506172 -88337684 + (CCA)n Simple_repeat Simple_repeat 1 180 0 1 840 656 127 0 9 chr11 33506172 33506232 -88337624 + (CACCAT)n Simple_repeat Simple_repeat 3 62 0 1 840 387 294 77 39 chr11 33506684 33506920 -88336936 - L1MB7 LINE L1 -1 6179 5924 1 840 213 308 0 49 chr11 33506931 33507013 -88336843 - MIRb SINE MIR -103 165 88 1 840 288 294 193 0 chr11 33508553 33508662 -88335194 + PB1D10 SINE Alu 1 130 -19 1 840 433 218 44 27 chr11 33510079 33510274 -88333582 - L1MB7 LINE L1 -2 6178 5977 1 840 728 22 11 0 chr11 33510315 33510405 -88333451 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 840 190 255 0 52 chr11 33511676 33511734 -88332122 - MIRc SINE MIR -112 156 102 2 840 258 32 0 0 chr11 33511918 33511949 -88331907 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 840 465 99 0 0 chr11 33511949 33512030 -88331826 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 840 186 264 94 0 chr11 33512356 33512409 -88331447 - MIRc SINE MIR -97 171 114 2 840 297 316 73 3 chr11 33512493 33512623 -88331233 - MIRm SINE MIR -92 176 41 2 840 573 88 0 0 chr11 33513005 33513085 -88330771 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 2 840 807 112 0 0 chr11 33513086 33513220 -88330636 + (TTTC)n Simple_repeat Simple_repeat 4 137 0 2 840 340 143 24 0 chr11 33513222 33513306 -88330550 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 2 840 369 294 118 82 chr11 33514678 33514993 -88328863 - MER46C DNA MER2_type -1 337 12 2 840 998 141 222 0 chr11 33515396 33515581 -88328275 - URR1A DNA MER1_type 0 226 1 2 840 198 43 41 61 chr11 33515589 33515638 -88328218 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 840 297 128 0 0 chr11 33516942 33516989 -88326867 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 840 860 251 7 120 chr11 33516993 33517301 -88326555 - B4A SINE B4 -18 274 2 3 840 490 245 144 53 chr11 33517379 33517642 -88326214 - L1ME2 LINE L1 -283 5881 5595 3 840 1049 136 28 0 chr11 33517648 33517824 -88326032 - URR1A DNA MER1_type -1 225 45 3 840 419 293 13 32 chr11 33518167 33518322 -88325534 - L1MD LINE L1 -839 5307 5156 3 840 485 226 0 0 chr11 33518365 33518471 -88325385 + L1MA5 LINE L1 6195 6300 0 3 840 1324 208 19 0 chr11 33518710 33518970 -88324886 - Lx5 LINE L1 0 7050 6786 3 840 669 238 78 14 chr11 33519013 33519315 -88324541 + ORR1D2 LTR MaLR 8 364 -6 3 840 459 298 110 41 chr11 33519395 33519860 -88323996 - L1ME2 LINE L1 -1379 4767 4271 3 840 741 156 23 11 chr11 33519892 33520067 -88323789 + (TATG)n Simple_repeat Simple_repeat 2 178 0 3 840 961 316 81 44 chr11 33520069 33520257 -88323599 - L1ME2 LINE L1 -1885 4261 4073 3 840 741 182 324 0 chr11 33520257 33520427 -88323429 - URR1A DNA MER1_type 0 226 2 4 840 961 316 81 44 chr11 33520427 33520965 -88322891 - L1ME2 LINE L1 -2074 4072 3508 3 840 327 312 73 0 chr11 33521043 33521152 -88322704 - PB1 SINE Alu -9 118 2 4 840 436 246 24 8 chr11 33521154 33521277 -88322579 - L1MB2 LINE L1 -37 6134 6010 4 840 1472 296 77 27 chr11 33521305 33521789 -88322067 + L1MA9 LINE L1 4838 5343 -969 4 840 664 203 0 51 chr11 33521789 33521945 -88321911 + B1_Mur2 SINE Alu 1 148 -1 4 840 1472 269 44 76 chr11 33521945 33522378 -88321478 + L1MA9 LINE L1 5344 5794 -518 4 840 279 0 0 0 chr11 33522378 33522409 -88321447 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 840 1472 269 44 76 chr11 33522409 33522552 -88321304 + L1MA9 LINE L1 5795 5916 -396 4 840 353 288 105 45 chr11 33522561 33522623 -88321233 + MLT2B3 LTR ERVL 1 56 -498 4 840 916 145 0 33 chr11 33522623 33522773 -88321083 - B1_Mus1 SINE Alu -1 147 3 4 840 666 230 0 0 chr11 33522775 33522910 -88320946 + MTEa LTR MaLR 49 183 -196 4 840 318 26 0 0 chr11 33522926 33522965 -88320891 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 4 840 2166 256 189 32 chr11 33523998 33524869 -88318987 - MTE-int LTR MaLR -75 1505 498 5 840 1094 296 7 17 chr11 33524915 33525210 -88318646 - MTEa LTR MaLR -87 292 1 5 840 1438 119 5 0 chr11 33525411 33525630 -88318226 + Lx LINE L1 6435 6654 0 5 840 1076 269 43 136 chr11 33526227 33526645 -88317211 - MTE2a LTR MaLR 0 379 1 5 840 625 192 88 0 chr11 33526813 33526938 -88316918 + B1_Mur1 SINE Alu 5 140 -9 5 840 302 0 26 0 chr11 33526942 33526980 -88316876 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 840 229 271 0 0 chr11 33528342 33528390 -88315466 + L2a LINE L2 3282 3329 -97 5 840 365 324 131 78 chr11 33528412 33528733 -88315123 - LTR16C LTR ERVL -151 338 1 5 840 293 224 13 26 chr11 33529000 33529078 -88314778 - MER5B DNA MER1_type -6 172 96 5 840 251 314 56 44 chr11 33529175 33529335 -88314521 + MIRb SINE MIR 90 251 -17 5 840 337 265 19 29 chr11 33530770 33530875 -88312981 - L1M5 LINE L1 -2229 3917 3814 6 840 939 278 98 26 chr11 33530909 33531378 -88312478 - L1M5 LINE L1 -2489 3657 3155 6 840 802 146 0 0 chr11 33531408 33531531 -88312325 - B1_Mus2 SINE Alu -24 123 1 6 840 305 100 20 0 chr11 33531661 33531711 -88312145 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 840 243 322 127 0 chr11 33531811 33531929 -88311927 + MIR SINE MIR 32 164 -98 6 840 353 273 62 15 chr11 33533425 33533510 -88310346 - MLT1A1 LTR MaLR -5 403 321 6 840 1000 136 162 59 chr11 33533510 33533714 -88310142 - URR1B DNA MER1_type 0 225 1 6 840 353 273 62 15 chr11 33533714 33533758 -88310098 - MLT1A1 LTR MaLR -88 320 269 6 840 640 267 207 45 chr11 33535417 33535793 -88308063 - L1MC4a LINE L1 -768 7114 6678 6 840 923 137 20 7 chr11 33536356 33536503 -88307353 - B1_Mur4 SINE Alu -1 149 1 6 840 659 283 53 32 chr11 33536595 33536785 -88307071 + B3A SINE B2 2 195 -3 6 840 636 213 42 14 chr11 33537268 33537411 -88306445 - MTD LTR MaLR -55 364 218 6 840 667 234 14 7 chr11 33537989 33538135 -88305721 + B1F SINE Alu 2 148 -1 7 840 1173 69 7 0 chr11 33538484 33538629 -88305227 - B1_Mus1 SINE Alu -1 147 2 7 840 940 296 76 35 chr11 33539166 33539653 -88304203 - L1ME2 LINE L1 -320 5844 5338 7 840 487 281 43 56 chr11 33539718 33539880 -88303976 - RSINE1 SINE B4 -4 161 2 7 840 1494 63 16 21 chr11 33540046 33540240 -88303616 - B2_Mm2 SINE B2 -1 194 2 7 840 1059 321 137 40 chr11 33540253 33540602 -88303254 - L1ME2 LINE L1 -956 5190 4827 7 840 308 250 0 0 chr11 33540602 33540670 -88303186 - ID2 SINE ID -15 68 1 7 840 1059 321 137 40 chr11 33540670 33541751 -88302105 - L1ME2 LINE L1 -1320 4826 3621 7 840 398 324 31 60 chr11 33542836 33543091 -88300765 + MIR SINE MIR 3 244 -24 7 840 408 40 0 0 chr11 33543576 33543626 -88300230 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 840 257 317 83 0 chr11 33544163 33544283 -88299573 + MIRb SINE MIR 60 189 -79 7 840 198 0 0 0 chr11 33545464 33545486 -88298370 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 840 468 51 0 0 chr11 33550155 33550214 -88293642 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 840 842 151 22 0 chr11 33550578 33550717 -88293139 - B1_Mur3 SINE Alu -7 142 1 8 840 1043 99 19 0 chr11 33551039 33551201 -88292655 + L1_Mus3 LINE L1 6467 6631 -7 8 840 215 273 86 52 chr11 33551275 33551391 -88292465 - L4 LINE RTE -258 1771 1652 8 840 22 0 0 0 chr11 33551516 33551538 -88292318 + AT_rich Low_complexity Low_complexity 1 22 0 8 840 345 62 0 0 chr11 33552651 33552699 -88291157 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 840 566 324 21 0 chr11 33552704 33552846 -88291010 - RSINE1 SINE B4 -18 147 3 8 840 372 282 109 55 chr11 33552883 33552897 -88290959 - B3 SINE B2 -42 174 163 8 840 387 0 0 0 chr11 33552897 33552940 -88290916 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 840 412 280 110 5 chr11 33552940 33553090 -88290766 - B3A SINE B2 -54 162 1 8 840 436 250 175 78 chr11 33553099 33553316 -88290540 - L1MC2 LINE L1 -23 6321 6084 8 1 652 325 91 31 chr11 33554230 33554843 -88289013 + L1MEg LINE L1 731 1380 -4862 9 841 337 359 49 4 chr11 33554902 33555165 -88288691 + L1MEg LINE L1 2289 2563 -3583 9 841 859 141 168 5 chr11 33555248 33555433 -88288423 - URR1B DNA MER1_type 0 225 11 9 841 315 0 0 0 chr11 33555502 33555537 -88288319 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 841 400 72 14 14 chr11 33555656 33555726 -88288130 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 841 300 93 0 0 chr11 33555763 33555806 -88288050 + HAL1-3A_ME LINE L1 1976 2018 -840 9 841 306 0 0 0 chr11 33555833 33555867 -88287989 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 841 275 310 48 34 chr11 33555871 33556018 -88287838 + L1MEg LINE L1 2577 2725 -3421 9 841 1247 104 55 0 chr11 33556293 33556476 -88287380 - B2_Mm2 SINE B2 -1 194 2 9 841 400 292 7 46 chr11 33556947 33557098 -88286758 + MER121 Unknown Unknown 61 205 -207 9 841 207 0 0 0 chr11 33557965 33557988 -88285868 + (T)n Simple_repeat Simple_repeat 1 23 0 9 841 322 331 83 13 chr11 33560540 33560696 -88283160 + MER102c DNA MER1_type 88 254 -77 9 841 358 147 28 42 chr11 33561041 33561112 -88282744 - MIRb SINE MIR -94 174 105 1 841 575 14 0 14 chr11 33562779 33562852 -88281004 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 841 446 255 28 9 chr11 33562891 33562998 -88280858 - RSINE1 SINE B4 -14 151 43 1 841 243 0 0 0 chr11 33563055 33563082 -88280774 + (TCTCTG)n Simple_repeat Simple_repeat 1 27 0 1 841 312 94 0 0 chr11 33563086 33563139 -88280717 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 841 228 292 40 32 chr11 33563302 33563426 -88280430 - L2c LINE L2 -237 3150 3026 1 841 220 189 0 70 chr11 33564292 33564349 -88279507 + (CATAT)n Simple_repeat Simple_repeat 3 55 0 1 841 348 166 78 24 chr11 33564350 33564517 -88279339 + (CACAT)n Simple_repeat Simple_repeat 5 180 0 1 841 292 392 58 0 chr11 33565162 33565333 -88278523 - MIRb SINE MIR -62 206 26 1 841 214 298 56 17 chr11 33565375 33565489 -88278367 + MIRc SINE MIR 51 169 -93 1 841 21 0 0 0 chr11 33565669 33565690 -88278166 + AT_rich Low_complexity Low_complexity 1 21 0 1 841 351 0 0 0 chr11 33566613 33566652 -88277204 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 841 1173 209 159 33 chr11 33567890 33568192 -88275664 + MTD LTR MaLR 19 358 -61 1 841 894 153 168 59 chr11 33568808 33569010 -88274846 + URR1A DNA MER1_type 1 224 -2 1 841 399 56 0 0 chr11 33572029 33572083 -88271773 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 1 841 324 0 0 0 chr11 33572516 33572552 -88271304 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 841 504 0 0 0 chr11 33573262 33573318 -88270538 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 841 936 221 0 6 chr11 33574461 33574643 -88269213 - B3A SINE B2 -16 182 2 1 841 732 302 151 34 chr11 33574929 33575378 -88268478 - MLT1D LTR MaLR 0 467 1 1 841 213 39 0 0 chr11 33576388 33576414 -88267442 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 841 1136 44 0 0 chr11 33576414 33576549 -88267307 - B1_Mm SINE Alu -12 135 1 1 841 866 213 139 30 chr11 33576849 33577086 -88266770 + MLT1C LTR MaLR 1 263 -204 1 841 300 274 97 0 chr11 33577193 33577306 -88266550 + L1MCa LINE L1 1836 1959 -4549 1 841 277 251 101 52 chr11 33577328 33577485 -88266371 - MIRb SINE MIR -101 161 1 1 841 369 0 0 0 chr11 33578490 33578531 -88265325 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 841 387 0 0 0 chr11 33578531 33578573 -88265283 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 841 617 274 14 0 chr11 33578867 33579013 -88264843 - B1_Mur1 SINE Alu -1 148 1 1 841 387 0 0 0 chr11 33579691 33579734 -88264122 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 841 291 286 9 28 chr11 33579791 33579899 -88263957 + L1MA5 LINE L1 6056 6161 -139 1 841 423 0 0 0 chr11 33581239 33581286 -88262570 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 841 270 0 0 0 chr11 33581618 33581648 -88262208 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 841 594 51 0 0 chr11 33582353 33582431 -88261425 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 841 233 287 59 52 chr11 33582551 33582687 -88261169 - MLT1A1 LTR MaLR -270 138 2 1 841 586 340 24 0 chr11 33583607 33583816 -88260040 - Tigger12c DNA MER2_type -180 554 341 1 841 211 277 108 0 chr11 33584046 33584129 -88259727 + MIR SINE MIR 41 132 -130 1 841 226 268 14 14 chr11 33585169 33585241 -88258615 + CT-rich Low_complexity Low_complexity 2 73 0 1 841 202 200 18 35 chr11 33586413 33586470 -88257386 + CT-rich Low_complexity Low_complexity 1 56 0 1 841 216 331 68 27 chr11 33586927 33587083 -88256773 + MIRc SINE MIR 35 201 -67 1 841 30 0 0 0 chr11 33588553 33588583 -88255273 + AT_rich Low_complexity Low_complexity 1 30 0 1 841 180 163 0 0 chr11 33588584 33588627 -88255229 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 841 521 288 131 0 chr11 33588629 33588789 -88255067 - B3A SINE B2 -15 183 3 1 841 192 77 0 0 chr11 33588814 33588840 -88255016 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 841 1031 81 0 6 chr11 33589895 33590056 -88253800 + (TCCA)n Simple_repeat Simple_repeat 1 160 0 1 841 192 137 59 0 chr11 33590753 33590804 -88253052 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 1 841 348 314 49 0 chr11 33590987 33591089 -88252767 - MIRb SINE MIR -71 197 91 1 841 209 245 38 0 chr11 33591739 33591792 -88252064 - MIRc SINE MIR -194 74 20 1 841 936 203 39 48 chr11 33592222 33592429 -88251427 + B3 SINE B2 1 205 -11 1 841 814 313 161 7 chr11 33592648 33592745 -88251111 + L1MC3 LINE L1 6759 6854 -931 1 841 324 0 0 0 chr11 33592745 33592781 -88251075 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 841 814 313 161 7 chr11 33592781 33593274 -88250582 + L1MC3 LINE L1 6855 7439 -346 1 841 544 268 58 128 chr11 33593266 33593478 -88250378 + L1MA4 LINE L1 5628 5830 -470 1 841 932 171 7 0 chr11 33593478 33593624 -88250232 + B1_Mur4 SINE Alu 4 150 0 1 841 544 276 55 96 chr11 33593624 33593762 -88250094 + L1MA4 LINE L1 5811 5926 -1547 1 841 309 257 40 17 chr11 33593798 33593972 -88249884 + (TATG)n Simple_repeat Simple_repeat 1 178 0 1 841 698 235 37 32 chr11 33594275 33594464 -88249392 + B2_Mm2 SINE B2 1 190 -5 1 841 923 227 87 10 chr11 33594492 33594688 -88249168 + B3 SINE B2 2 212 -4 1 841 906 112 0 0 chr11 33595239 33595519 -88248337 + (TC)n Simple_repeat Simple_repeat 1 280 0 1 841 189 0 0 0 chr11 33595530 33595551 -88248305 + (CACAC)n Simple_repeat Simple_repeat 1 21 0 1 841 306 290 51 98 chr11 33595608 33595821 -88248035 + ORR1E LTR MaLR 1 211 -148 1 841 276 281 59 59 chr11 33596900 33596911 -88246945 - B1_Mm SINE Alu -45 102 93 1 841 246 62 0 0 chr11 33596911 33596943 -88246913 + (CTG)n Simple_repeat Simple_repeat 2 33 0 1 841 374 223 70 37 chr11 33596943 33597033 -88246823 - PB1D7 SINE Alu -55 92 1 1 841 278 255 82 131 chr11 33597033 33597070 -88246786 - ID SINE ID -143 81 51 1 841 236 284 115 96 chr11 33597204 33597360 -88246496 + LTR81B LTR ERV1? 34 192 -1201 1 841 267 157 0 0 chr11 33598018 33598069 -88245787 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 1 841 471 236 100 23 chr11 33598412 33598436 -88245420 - B1F SINE Alu 0 149 119 1 841 387 0 0 0 chr11 33598436 33598479 -88245377 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 841 677 176 2 0 chr11 33598479 33598584 -88245272 - B1_Mus1 SINE Alu -31 118 11 1 841 588 158 4 44 chr11 33599993 33600244 -88243612 + GA-rich Low_complexity Low_complexity 1 240 0 1 841 1367 144 51 0 chr11 33601122 33601337 -88242519 + URR1A DNA MER1_type 1 226 0 1 841 264 314 83 25 chr11 33601380 33601501 -88242355 + LTR33 LTR ERVL 185 312 -203 1 841 205 243 0 119 chr11 33601715 33601883 -88241973 + GA-rich Low_complexity Low_complexity 6 153 0 1 841 214 129 0 139 chr11 33601716 33601788 -88242068 + G-rich Low_complexity Low_complexity 4 65 0 1 841 234 249 0 128 chr11 33602001 33602204 -88241652 + G-rich Low_complexity Low_complexity 1 177 0 1 841 186 71 0 0 chr11 33602789 33602817 -88241039 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 841 237 232 78 44 chr11 33602892 33602982 -88240874 - MER34A1 LTR ERV1 -432 155 63 1 841 1292 291 27 54 chr11 33603095 33603465 -88240391 + MTEa LTR MaLR 13 372 -7 1 841 197 271 129 0 chr11 33604792 33604877 -88238979 - L2c LINE L2 -165 3222 3127 1 841 402 21 0 0 chr11 33605019 33605066 -88238790 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 841 294 16 0 87 chr11 33605894 33605963 -88237893 + (GTGTG)n Simple_repeat Simple_repeat 3 65 0 1 841 1699 158 78 13 chr11 33607363 33607553 -88236303 + RMER17C LTR ERVK 2 212 -198 1 841 744 77 0 0 chr11 33607553 33607657 -88236199 + (TC)n Simple_repeat Simple_repeat 2 105 0 1 841 1699 158 78 13 chr11 33607657 33607850 -88236006 + RMER17C LTR ERVK 213 409 -1 1 841 237 297 62 92 chr11 33607916 33608046 -88235810 + MIRb SINE MIR 112 237 -31 1 841 499 258 0 0 chr11 33608884 33609043 -88234813 + (GAGTG)n Simple_repeat Simple_repeat 3 161 0 1 841 227 114 23 0 chr11 33609318 33609362 -88234494 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 841 912 55 0 0 chr11 33609365 33609492 -88234364 + (CA)n Simple_repeat Simple_repeat 2 128 0 1 841 334 36 36 18 chr11 33609705 33609761 -88234095 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 1 841 856 292 38 21 chr11 33609776 33610063 -88233793 - B4A SINE B4 0 292 1 1 841 809 185 6 0 chr11 33610173 33610207 -88233649 + polypyrimidine Low_complexity Low_complexity 142 175 0 1 841 1182 112 0 0 chr11 33610207 33610385 -88233471 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1 841 809 185 6 0 chr11 33610385 33610433 -88233423 + polypyrimidine Low_complexity Low_complexity 94 141 0 1 841 1166 106 0 11 chr11 33610433 33610615 -88233241 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 841 809 185 6 0 chr11 33610615 33610704 -88233152 + polypyrimidine Low_complexity Low_complexity 4 93 0 1 841 1116 133 0 0 chr11 33610713 33610893 -88232963 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 841 513 260 82 9 chr11 33611368 33611571 -88232285 - B3A SINE B2 0 216 2 1 841 1176 55 7 0 chr11 33611641 33611786 -88232070 - B1_Mus2 SINE Alu 0 147 2 1 841 243 189 0 0 chr11 33611932 33611985 -88231871 + (CCA)n Simple_repeat Simple_repeat 1 53 0 1 841 3433 15 2 0 chr11 33612456 33612851 -88231005 + MTA_Mm LTR MaLR 1 396 0 1 841 247 310 39 20 chr11 33612927 33613029 -88230827 - L1M5 LINE L1 -570 5670 5567 1 841 220 238 16 0 chr11 33613074 33613137 -88230719 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 841 249 292 175 0 chr11 33613234 33613354 -88230502 - L1MC1 LINE L1 -16 6317 6177 1 841 2431 307 131 30 chr11 33613437 33615190 -88228666 - L1MC1 LINE L1 -278 6055 4107 1 841 303 28 0 0 chr11 33615190 33615226 -88228630 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 841 2431 283 135 29 chr11 33615226 33616853 -88227003 - L1MC1 LINE L1 -2024 4122 2283 1 841 492 62 0 0 chr11 33618644 33618708 -88225148 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 841 183 204 0 0 chr11 33619068 33619117 -88224739 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 841 2252 99 16 0 chr11 33619390 33619712 -88224144 + ORR1A2 LTR MaLR 1 327 0 2 841 269 287 167 14 chr11 33619960 33620098 -88223758 + MLT1J LTR MaLR 287 445 -67 2 841 228 232 92 31 chr11 33620380 33620415 -88223441 - MIR SINE MIR -141 121 85 2 841 2295 137 19 5 chr11 33620415 33620788 -88223068 + ORR1C1 LTR MaLR 1 378 0 2 841 228 232 92 31 chr11 33620788 33620850 -88223006 - MIR SINE MIR -178 84 18 2 841 389 348 14 7 chr11 33620891 33621030 -88222826 + RSINE1 SINE B4 1 140 -25 2 841 278 312 147 19 chr11 33622551 33622816 -88221040 - L2 LINE L2 -354 3065 2767 2 841 2550 259 65 21 chr11 33622819 33623629 -88220227 + RCHARR1 DNA MER1_type 4 849 -125 2 841 1473 0 17 0 chr11 33624707 33625056 -88218800 + (GAA)n Simple_repeat Simple_repeat 1 355 0 2 841 214 276 62 50 chr11 33625087 33625167 -88218689 - MIR SINE MIR -89 119 39 2 841 288 0 0 0 chr11 33625254 33625286 -88218570 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 841 309 82 0 0 chr11 33625361 33625410 -88218446 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 841 227 350 0 0 chr11 33625458 33625538 -88218318 - MER2 DNA MER2_type -144 201 122 2 841 190 341 12 24 chr11 33626127 33626211 -88217645 - MIRb SINE MIR -146 122 40 2 841 240 411 26 4 chr11 33626948 33627219 -88216637 + L1M2 LINE L1 5520 5796 -504 2 841 1435 45 0 16 chr11 33627885 33628564 -88215292 + (TCCA)n Simple_repeat Simple_repeat 1 667 0 2 841 187 244 90 79 chr11 33628705 33628794 -88215062 + MIR3 SINE MIR 112 201 -7 2 841 510 207 29 6 chr11 33629328 33629498 -88214358 + (TCCA)n Simple_repeat Simple_repeat 1 174 0 2 841 314 286 39 85 chr11 33630524 33630654 -88213202 + MLT1A0 LTR MaLR 1 124 -241 2 841 198 103 0 0 chr11 33633717 33633746 -88210110 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 2 841 258 312 0 48 chr11 33633782 33633866 -88209990 - MLT1C LTR MaLR -59 408 329 2 841 239 79 26 0 chr11 33633872 33633910 -88209946 + (TGGGGG)n Simple_repeat Simple_repeat 3 41 0 2 841 248 346 0 0 chr11 33636144 33636222 -88207634 - L2c LINE L2 -10 3377 3300 2 841 310 267 86 0 chr11 33637500 33637605 -88206251 + PB1D7 SINE Alu 2 115 -5 2 841 624 116 0 0 chr11 33637605 33637700 -88206156 + (GGGA)n Simple_repeat Simple_repeat 2 96 0 2 841 504 0 0 0 chr11 33638121 33638177 -88205679 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 841 489 47 0 0 chr11 33639438 33639502 -88204354 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 841 396 0 0 0 chr11 33639746 33639790 -88204066 + (GGA)n Simple_repeat Simple_repeat 1 44 0 2 841 228 305 23 15 chr11 33640640 33640770 -88203086 + (TG)n Simple_repeat Simple_repeat 2 132 0 2 841 315 235 0 0 chr11 33640783 33640902 -88202954 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 841 401 262 27 45 chr11 33640909 33641090 -88202766 - B4A SINE B4 -6 286 8 2 841 248 306 47 0 chr11 33641173 33641258 -88202598 - MLT1I LTR MaLR -2 409 321 2 841 380 315 108 5 chr11 33641303 33641488 -88202368 + MIR SINE MIR 49 252 -10 2 841 283 296 14 0 chr11 33645158 33645229 -88198627 - MIRc SINE MIR -115 153 82 2 841 627 174 90 8 chr11 33645334 33645467 -88198389 - B1_Mur4 SINE Alu 0 150 7 2 841 201 268 84 0 chr11 33646100 33646171 -88197685 + MIRc SINE MIR 8 84 -184 2 841 555 335 130 39 chr11 33646266 33646729 -88197127 + MLT1D LTR MaLR 1 505 0 2 841 1208 279 133 14 chr11 33648110 33648605 -88195251 + L1MB5 LINE L1 5521 6074 -100 2 841 678 315 20 0 chr11 33648648 33648851 -88195005 - Tigger5 DNA MER2_type 0 2406 2200 2 841 198 403 84 21 chr11 33650567 33650757 -88193099 + L2b LINE L2 3151 3352 -23 2 841 477 0 0 0 chr11 33651996 33652049 -88191807 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 841 252 0 0 0 chr11 33652049 33652076 -88191780 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 841 315 0 0 0 chr11 33653102 33653137 -88190719 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 841 777 108 24 12 chr11 33653229 33653398 -88190458 + (TCTA)n Simple_repeat Simple_repeat 3 173 0 2 841 242 318 59 0 chr11 33653600 33653685 -88190171 - MIR SINE MIR -67 141 52 2 841 220 331 21 13 chr11 33653872 33653967 -88189889 - MIRc SINE MIR -166 102 2 2 841 379 347 97 0 chr11 33654445 33654641 -88189215 + MIRb SINE MIR 54 268 0 2 841 3220 27 42 2 chr11 33654700 33655103 -88188753 - LSU-rRNA_Hsa rRNA rRNA -3103 1932 1514 2 841 334 301 118 16 chr11 33656282 33656468 -88187388 - MIRc SINE MIR -45 223 19 2 841 199 350 38 0 chr11 33657808 33657888 -88185968 + MIRm SINE MIR 55 137 -139 2 841 1894 126 122 14 chr11 33658407 33658761 -88185095 - ORR1B1 LTR MaLR 0 394 3 2 841 250 267 109 57 chr11 33659351 33659526 -88184330 + MIRb SINE MIR 22 205 -63 2 841 233 317 27 27 chr11 33660595 33660741 -88183115 - B1F1 SINE Alu 0 149 4 2 841 196 296 0 27 chr11 33661839 33661912 -88181944 - MIRb SINE MIR -64 204 134 2 841 239 355 85 7 chr11 33662160 33662313 -88181543 + MIRb SINE MIR 47 211 -57 2 841 246 360 77 27 chr11 33663030 33663250 -88180606 + MLT1D LTR MaLR 43 273 -232 2 841 369 153 0 0 chr11 33663433 33663505 -88180351 + (CCA)n Simple_repeat Simple_repeat 1 72 0 2 841 268 319 111 8 chr11 33663624 33663741 -88180115 - MIRb SINE MIR -6 262 134 2 841 661 259 134 0 chr11 33664623 33664839 -88179017 + B4A SINE B4 1 245 -47 2 841 426 39 0 0 chr11 33664854 33664906 -88178950 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 841 546 82 0 0 chr11 33664919 33665004 -88178852 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 841 751 201 0 13 chr11 33665846 33665997 -88177859 + B1F SINE Alu 1 149 0 2 841 306 0 0 0 chr11 33666647 33666681 -88177175 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 841 238 342 32 48 chr11 33667262 33667388 -88176468 - MTC LTR MaLR -146 275 152 2 841 328 261 88 44 chr11 33667798 33667934 -88175922 + B1F1 SINE Alu 7 148 -1 2 841 461 240 9 9 chr11 33667977 33668082 -88175774 + PB1D10 SINE Alu 5 109 -8 2 841 185 170 0 60 chr11 33668088 33668138 -88175718 + GA-rich Low_complexity Low_complexity 2 48 0 2 841 336 309 163 85 chr11 33668727 33669137 -88174719 - L3 LINE CR1 -30 4459 4018 2 841 944 114 0 7 chr11 33669610 33669760 -88174096 + (TTC)n Simple_repeat Simple_repeat 2 150 0 2 841 267 31 0 0 chr11 33669850 33669882 -88173974 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 2 841 1411 279 41 70 chr11 33671501 33672173 -88171683 + L1MA5 LINE L1 5623 6295 -5 2 841 568 341 54 24 chr11 33673339 33673672 -88170184 + MER2 DNA MER2_type 3 345 0 2 841 832 282 78 26 chr11 33673965 33674169 -88169687 + B4 SINE B4 2 216 -76 2 841 450 0 0 0 chr11 33674169 33674219 -88169637 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 2 841 832 282 78 26 chr11 33674219 33674283 -88169573 + B4 SINE B4 217 284 -8 2 841 381 22 0 0 chr11 33674286 33674332 -88169524 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 841 203 105 0 50 chr11 33674344 33674384 -88169472 + GA-rich Low_complexity Low_complexity 2 39 0 2 841 392 344 31 38 chr11 33674433 33674593 -88169263 + MLT1A0 LTR MaLR 1 159 -206 2 841 285 385 24 59 chr11 33674788 33674970 -88168886 + MLT1H1 LTR MaLR 90 263 -328 2 841 267 247 151 0 chr11 33675174 33675247 -88168609 + MLT1H1 LTR MaLR 450 533 -46 2 841 312 352 57 16 chr11 33675810 33675934 -88167922 - ORR1E LTR MaLR -230 129 1 2 841 279 292 121 26 chr11 33676017 33676133 -88167723 + MamGypLTR1a LTR Gypsy 626 752 -32 2 841 806 157 17 11 chr11 33676560 33676734 -88167122 + CT-rich Low_complexity Low_complexity 6 180 0 2 841 439 266 45 9 chr11 33676874 33676984 -88166872 - MER58B DNA MER1_type 0 341 228 2 841 555 325 10 20 chr11 33677002 33677200 -88166656 - MER2 DNA MER2_type -8 337 142 2 841 219 69 0 0 chr11 33677200 33677229 -88166627 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 841 2805 248 136 18 chr11 33677229 33677406 -88166450 + RCHARR1 DNA MER1_type 5 208 -766 2 841 384 77 0 0 chr11 33677406 33677458 -88166398 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 841 2805 248 136 18 chr11 33677458 33678138 -88165718 + RCHARR1 DNA MER1_type 209 963 -11 2 841 296 297 43 86 chr11 33678276 33678416 -88165440 - MER58B DNA MER1_type -206 135 2 2 841 862 312 43 16 chr11 33678724 33678978 -88164878 + B4A SINE B4 22 282 -10 2 841 501 17 0 0 chr11 33678996 33679054 -88164802 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 841 348 265 76 16 chr11 33679151 33679297 -88164559 - MTC LTR MaLR -4 415 234 2 841 1072 261 97 10 chr11 33679318 33679628 -88164228 + MER2 DNA MER2_type 9 345 0 2 841 267 31 0 0 chr11 33680271 33680303 -88163553 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 841 723 300 121 51 chr11 33680319 33680691 -88163165 + Charlie8 DNA MER1_type 92 489 -1939 2 841 211 233 22 22 chr11 33681359 33681451 -88162405 + (CATA)n Simple_repeat Simple_repeat 4 95 0 2 841 233 295 50 74 chr11 33681575 33681696 -88162160 + MIRb SINE MIR 83 200 -68 2 841 304 240 9 19 chr11 33682133 33682239 -88161617 + GA-rich Low_complexity Low_complexity 1 105 0 2 841 184 244 109 65 chr11 33682459 33682551 -88161305 - MIRb SINE MIR -69 199 104 2 841 398 134 30 30 chr11 33683474 33683605 -88160251 + (CAGAGA)n Simple_repeat Simple_repeat 2 132 0 2 841 911 150 12 0 chr11 33683586 33683753 -88160103 + GA-rich Low_complexity Low_complexity 6 174 0 2 841 252 309 45 18 chr11 33684151 33684263 -88159593 + RMER12 LTR ERVK 742 856 -466 2 841 558 270 45 22 chr11 33684265 33684443 -88159413 - B3A SINE B2 -16 182 1 2 841 277 243 186 39 chr11 33685122 33685243 -88158613 - B1F SINE Alu 0 149 13 2 842 213 244 0 36 chr11 33686321 33686393 -88157463 + MIRm SINE MIR 195 262 -14 2 842 196 235 61 141 chr11 33687419 33687518 -88156338 + MER5B DNA MER1_type 40 130 -48 3 842 1280 43 12 6 chr11 33687622 33687786 -88156070 + L1_Mus2 LINE L1 6401 6565 -1 3 842 21 57 0 0 chr11 33687789 33687824 -88156032 + AT_rich Low_complexity Low_complexity 1 35 0 3 842 30 27 0 0 chr11 33688005 33688042 -88155814 + AT_rich Low_complexity Low_complexity 1 37 0 3 842 315 0 0 0 chr11 33688869 33688904 -88154952 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 842 1161 105 0 0 chr11 33688905 33689076 -88154780 + (GA)n Simple_repeat Simple_repeat 2 172 0 3 842 211 340 61 44 chr11 33689560 33689674 -88154182 - L2a LINE L2 0 3426 3311 3 842 2492 151 24 22 chr11 33690414 33690826 -88153030 - MTC LTR MaLR -8 413 1 3 842 768 287 169 13 chr11 33691110 33691417 -88152439 - MTEb LTR MaLR -24 355 1 3 842 268 274 35 17 chr11 33692095 33692210 -88151646 + GA-rich Low_complexity Low_complexity 5 121 0 3 842 309 26 0 0 chr11 33692836 33692874 -88150982 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 3 842 1299 32 0 0 chr11 33693103 33693259 -88150597 + (TTCCC)n Simple_repeat Simple_repeat 2 157 0 3 842 261 0 0 0 chr11 33693259 33693288 -88150568 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 3 842 757 230 113 31 chr11 33693330 33693586 -88150270 - B4A SINE B4 -14 278 2 3 842 431 130 0 13 chr11 33693978 33694056 -88149800 + (TCC)n Simple_repeat Simple_repeat 3 79 0 3 842 189 0 0 0 chr11 33694095 33694116 -88149740 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 842 864 159 25 25 chr11 33694116 33694277 -88149579 - B2_Mm2 SINE B2 -34 161 1 3 842 330 278 44 44 chr11 33694553 33694666 -88149190 - MIRc SINE MIR -149 119 4 3 842 315 296 110 16 chr11 33694845 33695027 -88148829 + L2b LINE L2 2883 3081 -338 3 842 180 315 0 85 chr11 33695143 33695202 -88148654 + L2b LINE L2 3291 3344 -31 3 842 419 239 54 18 chr11 33695392 33695503 -88148353 - PB1D9 SINE Alu -5 115 1 3 842 180 0 0 0 chr11 33695728 33695748 -88148108 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 3 842 183 313 30 0 chr11 33696115 33696182 -88147674 - MIR SINE MIR -62 146 78 3 842 270 0 75 57 chr11 33696469 33696522 -88147334 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 842 1243 141 61 5 chr11 33696843 33697057 -88146799 + URR1A DNA MER1_type 1 226 0 3 842 208 312 16 0 chr11 33697129 33697193 -88146663 + MIRb SINE MIR 121 185 -83 3 842 219 289 0 0 chr11 33698407 33698459 -88145397 + GA-rich Low_complexity Low_complexity 2 53 0 3 842 182 281 32 53 chr11 33698467 33698561 -88145295 + L3b LINE CR1 206 297 -185 3 842 247 300 224 46 chr11 33699024 33699265 -88144591 + Charlie8 DNA MER1_type 5 288 -2140 3 842 269 270 168 18 chr11 33699647 33699760 -88144096 + MIRb SINE MIR 2 131 -137 3 842 389 319 61 146 chr11 33700341 33700814 -88143042 + L2a LINE L2 2951 3422 -4 3 842 631 260 21 27 chr11 33701504 33701690 -88142166 + HAL1-2a_MD LINE L1 2325 2509 -515 3 842 298 170 0 0 chr11 33701809 33701851 -88142005 - ORR1C2 LTR MaLR 0 384 343 3 842 2320 126 63 3 chr11 33701851 33702217 -88141639 + ORR1B1 LTR MaLR 1 388 -6 3 842 1365 156 203 7 chr11 33702223 33702513 -88141343 - ORR1C2 LTR MaLR -37 347 1 3 842 320 327 43 61 chr11 33702950 33703113 -88140743 + MER103 DNA DNA 4 163 -3 3 842 233 320 0 0 chr11 33703219 33703269 -88140587 - ID4 SINE ID -8 75 26 3 842 385 311 29 7 chr11 33703277 33703413 -88140443 - B1F SINE Alu -1 148 10 3 842 247 347 177 10 chr11 33705813 33706011 -88137845 + L1MEg LINE L1 455 685 -5550 3 842 311 309 106 59 chr11 33706075 33706838 -88137018 + L1MEg LINE L1 1885 2693 -4640 3 842 325 319 101 48 chr11 33706840 33707067 -88136789 + L1MEg LINE L1 2643 2881 -4452 3 842 344 200 53 0 chr11 33707152 33707227 -88136629 + PB1D10 SINE Alu 31 109 -8 3 842 410 349 53 11 chr11 33707239 33707427 -88136429 + L1MEg LINE L1 3005 3200 -4133 3 842 310 177 129 0 chr11 33707431 33707493 -88136363 + ID4_ SINE ID 10 79 -4 3 842 1282 173 23 0 chr11 33708092 33708312 -88135544 - URR1B DNA MER1_type 0 225 1 3 842 796 245 43 82 chr11 33708701 33709004 -88134852 - B4 SINE B4 0 292 2 3 842 533 278 296 11 chr11 33709095 33709375 -88134481 + MLT1A0 LTR MaLR 4 363 -2 3 842 185 306 105 33 chr11 33709922 33710074 -88133782 - MIRb SINE MIR -36 232 70 3 842 238 277 0 0 chr11 33710616 33710681 -88133175 - MIR SINE MIR -63 145 81 3 842 197 204 61 0 chr11 33710746 33710795 -88133061 - MIR3 SINE MIR -45 163 112 3 842 198 282 97 75 chr11 33710763 33710897 -88132959 - MIRm SINE MIR -125 151 15 3 842 1817 136 92 10 chr11 33710903 33711207 -88132649 + MTC LTR MaLR 13 341 -80 3 842 227 232 18 18 chr11 33711356 33711413 -88132443 + MTC LTR MaLR 351 407 0 3 842 252 0 0 0 chr11 33711594 33711622 -88132234 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 842 304 318 188 44 chr11 33712066 33712359 -88131497 + MLT1A1 LTR MaLR 55 389 -19 3 842 468 305 127 91 chr11 33712741 33713102 -88130754 + MLT1A LTR MaLR 1 374 0 3 842 265 313 69 91 chr11 33713141 33713415 -88130441 - L2c LINE L2 -38 3349 3082 3 842 261 207 37 0 chr11 33714009 33714091 -88129765 + GA-rich Low_complexity Low_complexity 1 85 0 3 842 547 81 23 0 chr11 33714528 33714614 -88129242 + (TCTCCC)n Simple_repeat Simple_repeat 1 88 0 3 842 1170 44 0 0 chr11 33715168 33715305 -88128551 + B1_Mus2 SINE Alu 2 138 -9 3 842 753 12 0 0 chr11 33715334 33715420 -88128436 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 3 842 471 18 0 0 chr11 33716006 33716062 -88127794 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 842 450 0 0 0 chr11 33716062 33716111 -88127745 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 842 247 327 54 9 chr11 33717061 33717172 -88126684 + MIR3 SINE MIR 10 125 -83 3 842 713 171 4 31 chr11 33718032 33718296 -88125560 + (CA)n Simple_repeat Simple_repeat 1 256 0 3 842 2920 74 37 22 chr11 33718320 33718722 -88125134 + L1_Mus2 LINE L1 6158 6565 -1 3 842 282 206 0 0 chr11 33718752 33718825 -88125031 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 842 183 364 0 0 chr11 33719711 33719777 -88124079 - MIRc SINE MIR -117 151 86 3 842 259 224 18 27 chr11 33720165 33720275 -88123581 + GA-rich Low_complexity Low_complexity 1 109 0 3 842 300 284 25 86 chr11 33720963 33721125 -88122731 - L2c LINE L2 -222 3165 3014 3 842 257 336 40 33 chr11 33721888 33722039 -88121817 + MIR SINE MIR 1 152 -110 3 842 347 250 67 98 chr11 33722801 33722965 -88120891 - Tigger12 DNA MER2_type -85 1874 1716 3 842 557 301 7 0 chr11 33723579 33723732 -88120124 - RSINE1 SINE B4 -9 156 3 3 842 303 248 116 73 chr11 33725157 33725344 -88118512 - MIRb SINE MIR -45 223 27 3 842 249 221 23 23 chr11 33726500 33726588 -88117268 + (TATAA)n Simple_repeat Simple_repeat 1 88 0 3 842 614 49 12 0 chr11 33726591 33726673 -88117183 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 3 842 183 173 52 156 chr11 33727759 33727855 -88116001 - L3 LINE CR1 -3471 1018 933 3 842 572 270 61 61 chr11 33727907 33728104 -88115752 - MamRep605 Unknown Unknown -69 807 611 3 842 296 308 44 0 chr11 33729339 33729430 -88114426 - MIRb SINE MIR -84 184 90 3 842 207 0 0 0 chr11 33729670 33729693 -88114163 + (A)n Simple_repeat Simple_repeat 1 23 0 3 842 192 200 0 0 chr11 33729692 33729732 -88114124 + GA-rich Low_complexity Low_complexity 5 44 0 3 842 225 342 74 8 chr11 33729751 33729872 -88113984 + MIRm SINE MIR 20 148 -128 3 842 242 325 101 31 chr11 33730031 33730190 -88113666 + MIRc SINE MIR 52 221 -47 3 842 486 343 159 5 chr11 33730911 33731119 -88112737 + Tigger5 DNA MER2_type 1 240 -2166 3 842 277 364 18 26 chr11 33731116 33731229 -88112627 + Tigger5 DNA MER2_type 2290 2401 -5 3 842 207 231 75 149 chr11 33731765 33731872 -88111984 - MIRm SINE MIR -4 272 174 3 842 259 351 19 63 chr11 33732502 33732660 -88111196 - MIRb SINE MIR -39 229 79 3 842 479 321 42 16 chr11 33732829 33733019 -88110837 - MER2B DNA MER2_type -3 333 139 3 842 419 225 11 0 chr11 33733027 33733116 -88110740 - B4 SINE B4 -201 91 2 3 842 282 371 19 0 chr11 33733116 33733221 -88110635 - MER2B DNA MER2_type -228 108 2 3 842 258 330 45 9 chr11 33733376 33733486 -88110370 + MIRb SINE MIR 26 139 -129 3 842 245 312 136 9 chr11 33733498 33733608 -88110248 + MIR SINE MIR 107 230 -32 3 842 221 240 173 55 chr11 33734861 33734971 -88108885 + B3 SINE B2 59 181 -35 3 842 281 280 106 11 chr11 33735151 33735245 -88108611 + MIR3 SINE MIR 81 183 -25 3 842 617 269 19 6 chr11 33735301 33735462 -88108394 - MER5A1 DNA MER1_type 0 166 4 3 842 727 64 28 0 chr11 33735467 33735576 -88108280 + (GGGAGA)n Simple_repeat Simple_repeat 4 115 0 3 842 300 325 8 54 chr11 33735639 33735769 -88108087 - MIRb SINE MIR -81 187 64 3 842 337 330 10 33 chr11 33736425 33736556 -88107300 + MIRb SINE MIR 44 178 -90 3 842 208 162 27 0 chr11 33737123 33737160 -88106696 + CT-rich Low_complexity Low_complexity 2 39 0 3 842 855 196 0 8 chr11 33738405 33738651 -88105205 + (TTCA)n Simple_repeat Simple_repeat 1 243 0 3 842 218 377 66 56 chr11 33739106 33739426 -88104430 - L2c LINE L2 -41 3346 3024 3 842 251 125 50 0 chr11 33740711 33740751 -88103105 - MIR SINE MIR -173 89 48 3 842 303 96 0 0 chr11 33743940 33743992 -88099864 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 842 654 105 0 0 chr11 33743992 33744106 -88099750 + (GA)n Simple_repeat Simple_repeat 2 115 0 3 842 531 0 0 0 chr11 33744362 33744421 -88099435 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 842 297 0 0 0 chr11 33744421 33744453 -88099403 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 842 205 318 105 35 chr11 33745300 33745414 -88098442 - MIRc SINE MIR -66 202 81 3 842 1408 200 86 29 chr11 33746466 33746595 -88097261 - ORR1D1 LTR MaLR -2 372 244 3 842 186 43 0 0 chr11 33746595 33746618 -88097238 + (CAGG)n Simple_repeat Simple_repeat 4 26 0 4 842 1408 200 86 29 chr11 33746618 33746838 -88097018 - ORR1D1 LTR MaLR -131 243 5 3 842 368 352 70 5 chr11 33748140 33748340 -88095516 + MIRb SINE MIR 30 242 -26 4 842 217 268 169 0 chr11 33748810 33748881 -88094975 + MIR SINE MIR 110 192 -70 4 842 194 354 17 34 chr11 33748963 33749080 -88094776 - L2b LINE L2 -2 3373 3259 4 842 267 346 28 40 chr11 33750938 33751127 -88092729 - MIRb SINE MIR -72 196 7 4 842 262 281 67 94 chr11 33752226 33752375 -88091481 + MamGypLTR2b LTR Gypsy 766 910 -12 4 842 287 340 36 55 chr11 33752378 33752543 -88091313 - MIRb SINE MIR -87 181 20 4 842 399 113 0 0 chr11 33752736 33752798 -88091058 + (GGA)n Simple_repeat Simple_repeat 1 62 0 4 842 193 392 54 0 chr11 33753580 33753654 -88090202 - L2c LINE L2 -225 3162 3085 4 842 1146 221 114 13 chr11 33753959 33754257 -88089599 - MTE2b LTR MaLR -48 331 4 4 842 1452 229 38 12 chr11 33754262 33754607 -88089249 - MTE2b-int LTR MaLR -2 1578 1225 4 842 2092 293 80 31 chr11 33754677 33755448 -88088408 - MTE2b-int LTR MaLR -762 818 10 4 842 233 270 47 16 chr11 33755456 33755520 -88088336 - MTE2b LTR MaLR 0 379 314 4 842 372 138 0 0 chr11 33755520 33755585 -88088271 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 842 216 163 0 0 chr11 33756178 33756221 -88087635 + (CTCA)n Simple_repeat Simple_repeat 3 45 0 4 842 341 325 79 32 chr11 33756647 33756863 -88086993 - L1MD2 LINE L1 -105 6254 6029 4 842 180 97 0 0 chr11 33757202 33757233 -88086623 + (A)n Simple_repeat Simple_repeat 1 31 0 4 842 22 0 0 0 chr11 33758626 33758648 -88085208 + AT_rich Low_complexity Low_complexity 1 22 0 4 842 203 274 32 0 chr11 33759186 33759248 -88084608 + MIRm SINE MIR 79 142 -134 4 842 471 107 0 0 chr11 33760178 33760253 -88083603 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 842 226 164 18 18 chr11 33760695 33760751 -88083105 + GA-rich Low_complexity Low_complexity 1 56 0 4 842 303 296 166 66 chr11 33761819 33762000 -88081856 - MTEa LTR MaLR -161 218 20 4 842 647 300 94 20 chr11 33762038 33762293 -88081563 + B4A SINE B4 1 274 -18 4 842 351 0 0 0 chr11 33762320 33762359 -88081497 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 842 769 258 221 31 chr11 33762442 33762752 -88081104 + MTEa LTR MaLR 4 372 -7 4 842 877 315 39 35 chr11 33762964 33763250 -88080606 + B4 SINE B4 6 292 0 4 842 880 156 12 15 chr11 33763281 33763618 -88080238 + (CA)n Simple_repeat Simple_repeat 1 335 0 4 842 312 174 41 8 chr11 33763650 33763772 -88080084 + (CA)n Simple_repeat Simple_repeat 1 126 0 4 842 1469 55 39 0 chr11 33764064 33764246 -88079610 - B2_Mm2 SINE B2 -6 189 1 4 842 664 215 66 97 chr11 33764399 33764595 -88079261 + B3A SINE B2 9 198 0 4 842 673 319 90 20 chr11 33764749 33765194 -88078662 + Lx8 LINE L1 6964 7439 -34 4 842 814 249 9 36 chr11 33765374 33765595 -88078261 - Lx8 LINE L1 -817 6656 6442 4 842 243 0 0 0 chr11 33765596 33765623 -88078233 + (TTG)n Simple_repeat Simple_repeat 3 29 0 4 842 23 0 0 0 chr11 33767351 33767374 -88076482 + AT_rich Low_complexity Low_complexity 1 23 0 4 842 694 325 55 76 chr11 33767930 33768262 -88075594 - ORR1E LTR MaLR 0 359 30 4 842 1156 187 0 74 chr11 33768262 33768505 -88075351 - URR1B DNA MER1_type 0 225 1 4 842 694 325 55 76 chr11 33768505 33768539 -88075317 - ORR1E LTR MaLR -330 29 1 4 842 654 164 0 0 chr11 33771272 33771394 -88072462 + GA-rich Low_complexity Low_complexity 2 123 0 4 842 256 354 69 8 chr11 33771592 33771723 -88072133 + MIRb SINE MIR 19 157 -111 4 842 316 313 172 63 chr11 33773864 33774038 -88069818 + L4 LINE RTE 1278 1470 -559 4 842 2092 152 118 44 chr11 33774472 33774557 -88069299 - RMER4A LTR ERVK 0 466 394 4 842 495 0 0 0 chr11 33774557 33774612 -88069244 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 842 2092 152 118 44 chr11 33774612 33774960 -88068896 - RMER4A LTR ERVK -73 393 1 4 842 1190 215 106 20 chr11 33774968 33775261 -88068595 + ORR1D1 LTR MaLR 1 373 -1 4 842 221 273 36 0 chr11 33775359 33775414 -88068442 + FLAM_A SINE Alu 1 57 -238 4 842 1933 172 81 14 chr11 33775654 33775830 -88068026 + ORR1C2 LTR MaLR 1 175 -209 4 842 290 75 38 0 chr11 33775830 33775883 -88067973 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 842 1933 172 81 14 chr11 33775883 33776066 -88067790 + ORR1C2 LTR MaLR 176 383 -1 4 842 1497 213 17 115 chr11 33776121 33776540 -88067316 + MTE2a LTR MaLR 2 379 0 4 842 486 0 0 0 chr11 33776559 33776613 -88067243 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 842 972 288 77 25 chr11 33778147 33778474 -88065382 + MLT1A0 LTR MaLR 2 345 -20 4 842 270 0 0 0 chr11 33778865 33778895 -88064961 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 842 316 274 0 113 chr11 33778900 33779015 -88064841 + L2c LINE L2 3267 3368 -19 4 842 330 286 196 59 chr11 33779713 33780070 -88063786 - MLT1A0 LTR MaLR -2 406 1 4 842 297 0 0 0 chr11 33780122 33780155 -88063701 + (A)n Simple_repeat Simple_repeat 1 33 0 4 842 250 187 34 148 chr11 33780155 33780243 -88063613 - L1M4 LINE L1 -1526 4620 4543 4 842 285 278 0 58 chr11 33780252 33780367 -88063489 - PB1D10 SINE Alu 0 120 20 4 842 1035 152 0 0 chr11 33780568 33780746 -88063110 + CT-rich Low_complexity Low_complexity 3 180 0 4 842 290 309 43 16 chr11 33780759 33780880 -88062976 - ID2 SINE ID -32 120 1 4 842 375 169 0 78 chr11 33780937 33781014 -88062842 + ID4_ SINE ID 3 73 -10 4 842 320 164 16 0 chr11 33781023 33781084 -88062772 + ID_B1 SINE B4 163 224 0 4 842 307 290 55 27 chr11 33781106 33781216 -88062640 - L1M4 LINE L1 -1717 4429 4317 4 842 795 254 265 57 chr11 33781220 33781633 -88062223 - L1M4 LINE L1 -1940 4206 3677 4 842 381 43 0 0 chr11 33781633 33781680 -88062176 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 842 795 254 265 57 chr11 33781680 33781912 -88061944 - L1M4 LINE L1 -2470 3676 3427 4 842 362 309 109 34 chr11 33782043 33782401 -88061455 - L1M4 LINE L1 -3431 2715 2331 4 842 512 161 0 9 chr11 33783316 33783425 -88060431 + L1_Mus3 LINE L1 6525 6637 -1 4 842 696 226 0 28 chr11 33783784 33783925 -88059931 - B1_Mur1 SINE Alu -12 137 1 4 842 1109 124 0 9 chr11 33784108 33784344 -88059512 + (TTC)n Simple_repeat Simple_repeat 1 233 0 4 842 1279 67 0 11 chr11 33784344 33784525 -88059331 + (TCC)n Simple_repeat Simple_repeat 1 179 0 4 842 605 130 0 18 chr11 33784525 33784577 -88059279 + (TTC)n Simple_repeat Simple_repeat 1 52 0 4 842 241 395 93 0 chr11 33784731 33784860 -88058996 - MLT1F2 LTR MaLR -398 162 22 4 842 799 269 30 21 chr11 33786697 33786932 -88056924 - MER2 DNA MER2_type -22 323 87 4 842 399 223 0 24 chr11 33786965 33787057 -88056799 - B1F1 SINE Alu -3 147 58 4 842 791 301 126 72 chr11 33787278 33787808 -88056048 - MER90a LTR ERV1 0 614 56 4 842 228 132 0 0 chr11 33788244 33788282 -88055574 + B3A SINE B2 2 39 -159 4 842 186 43 0 0 chr11 33788300 33788323 -88055533 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 842 249 204 0 18 chr11 33789059 33789114 -88054742 - MLT1A1 LTR MaLR 0 408 355 4 842 216 67 0 0 chr11 33789124 33789154 -88054702 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 4 842 252 85 49 33 chr11 33789148 33789209 -88054647 + A-rich Low_complexity Low_complexity 4 65 0 4 842 261 222 160 40 chr11 33789211 33789286 -88054570 - MLT1A1 LTR MaLR -56 352 269 4 842 1058 226 9 5 chr11 33789871 33790084 -88053772 - B3 SINE B2 0 216 3 4 842 286 349 19 19 chr11 33790088 33790106 -88053750 - PB1D10 SINE Alu 0 117 10 4 842 312 307 11 22 chr11 33790106 33790196 -88053660 - ID_B1 SINE B4 -45 179 91 4 842 188 203 0 33 chr11 33790911 33790972 -88052884 + (CCCA)n Simple_repeat Simple_repeat 2 60 0 4 842 359 266 163 38 chr11 33791251 33791435 -88052421 - MLT1N2 LTR MaLR 0 562 356 4 842 255 313 110 25 chr11 33791615 33791733 -88052123 - MLT1N2 LTR MaLR -313 249 122 4 842 246 322 194 66 chr11 33792739 33792935 -88050921 + MLT1D LTR MaLR 114 334 -290 4 842 950 275 140 36 chr11 33792969 33793305 -88050551 + MTEa LTR MaLR 6 376 -3 4 842 4732 276 94 45 chr11 33793305 33794797 -88049059 + MTEa-int LTR MaLR 13 1577 -3 4 842 661 241 210 31 chr11 33794803 33795117 -88048739 + MTEa LTR MaLR 4 373 -6 4 842 609 281 12 24 chr11 33795115 33795279 -88048577 + MLT1D LTR MaLR 337 498 -7 4 842 396 391 33 38 chr11 33795947 33796157 -88047699 + MLT1K LTR MaLR 47 255 -340 4 842 309 135 0 0 chr11 33797110 33797162 -88046694 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 842 28310 74 13 5 chr11 33797342 33801646 -88042210 + L1Md_F LINE L1 577 4917 -966 4 842 339 328 86 65 chr11 33801782 33801930 -88041926 + ORR1E LTR MaLR 7 167 -192 4 842 1037 188 114 0 chr11 33801930 33802132 -88041724 + URR1A DNA MER1_type 1 225 -1 4 842 339 328 86 65 chr11 33802132 33802169 -88041687 + ORR1E LTR MaLR 168 196 -163 4 842 1223 276 155 29 chr11 33802380 33802962 -88040894 + MER44D DNA MER2_type 38 692 -13 4 842 189 295 0 143 chr11 33802967 33803058 -88040798 + L2c LINE L2 3310 3387 0 4 842 197 200 33 0 chr11 33803504 33803564 -88040292 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 4 842 897 280 20 53 chr11 33803570 33803872 -88039984 - B4 SINE B4 0 292 1 4 842 1981 238 42 18 chr11 33803949 33804445 -88039411 + RMER5 LTR ERV1 16 523 -11 4 842 422 380 124 11 chr11 33804507 33804773 -88039083 - ORR1E LTR MaLR -63 296 1 4 842 682 297 80 75 chr11 33804821 33805196 -88038660 + MLT1D LTR MaLR 3 379 -126 4 842 988 264 104 68 chr11 33805357 33805723 -88038133 - MTEa LTR MaLR 0 379 1 4 842 193 178 0 61 chr11 33805821 33805887 -88037969 + CT-rich Low_complexity Low_complexity 6 67 0 4 842 1148 187 0 82 chr11 33806082 33806327 -88037529 + URR1B DNA MER1_type 1 225 0 4 842 235 271 50 50 chr11 33806908 33807009 -88036847 + MLT1A1 LTR MaLR 308 408 0 4 842 1696 210 99 137 chr11 33807098 33807673 -88036183 + RMER19C LTR ERVK 146 902 0 4 842 230 286 0 45 chr11 33807757 33807823 -88036033 + L3 LINE CR1 4360 4422 -67 4 842 311 277 0 35 chr11 33809140 33809226 -88034630 + MamGypLTR1d LTR Gypsy 725 807 -6 4 842 249 275 25 0 chr11 33809672 33809752 -88034104 + MER31A LTR ERV1 276 357 -128 4 842 1619 216 33 30 chr11 33809797 33810159 -88033697 - ORR1D1 LTR MaLR -4 370 8 4 842 240 310 115 35 chr11 33810186 33810273 -88033583 + Tigger7 DNA MER2_type 12 105 -2386 4 842 591 282 93 0 chr11 33810335 33810592 -88033264 + Tigger7 DNA MER2_type 30 383 -2108 4 842 625 276 43 27 chr11 33810601 33810787 -88033069 + MER44B DNA MER2_type 335 523 -27 4 842 268 293 213 0 chr11 33811209 33811448 -88032408 - MLT1B LTR MaLR 0 390 101 4 842 288 0 0 0 chr11 33811448 33811480 -88032376 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 842 706 312 146 24 chr11 33811503 33811756 -88032100 - B4 SINE B4 -3 289 6 5 842 265 277 107 81 chr11 33812919 33813068 -88030788 - MLT1A0 LTR MaLR -196 169 17 5 842 311 263 76 57 chr11 33813387 33813492 -88030364 + MER34A LTR ERV1 28 134 -437 5 842 387 201 0 0 chr11 33813744 33813878 -88029978 + CT-rich Low_complexity Low_complexity 1 134 0 5 842 1080 57 0 0 chr11 33815087 33815227 -88028629 + (TC)n Simple_repeat Simple_repeat 1 140 0 5 842 411 184 0 0 chr11 33815846 33815933 -88027923 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 842 234 281 16 0 chr11 33815953 33816017 -88027839 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 5 842 437 236 6 17 chr11 33816020 33816197 -88027659 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 842 186 264 187 44 chr11 33816384 33816475 -88027381 - MER5B DNA MER1_type -74 104 1 5 843 196 30 61 0 chr11 33817688 33817721 -88026135 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 843 412 269 273 5 chr11 33818261 33818481 -88025375 + LTR48 LTR ERV1 20 298 -489 5 843 507 299 60 102 chr11 33818594 33818926 -88024930 + Lx8 LINE L1 7153 7470 -3 5 843 557 282 99 96 chr11 33819119 33819421 -88024435 + ORR1E LTR MaLR 53 355 -4 5 843 345 312 88 0 chr11 33819430 33819555 -88024301 + LTR48 LTR ERV1 478 613 -31 5 843 232 377 77 27 chr11 33819820 33820041 -88023815 + MIRb SINE MIR 29 260 -8 5 843 331 256 24 0 chr11 33820458 33820540 -88023316 - PB1D10 SINE Alu -9 108 25 5 843 195 42 0 0 chr11 33820717 33820741 -88023115 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 843 233 317 0 47 chr11 33822342 33822428 -88021428 + ID4_ SINE ID 2 83 0 5 843 1125 121 22 6 chr11 33822861 33823044 -88020812 - ORR1B2 LTR MaLR -174 193 8 5 843 1910 178 108 11 chr11 33823502 33823871 -88019985 - MTD LTR MaLR -14 405 1 5 843 863 87 8 0 chr11 33824266 33824392 -88019464 + (TCC)n Simple_repeat Simple_repeat 2 128 0 5 843 204 212 17 34 chr11 33824982 33825099 -88018757 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 5 843 247 223 6 28 chr11 33825619 33825692 -88018164 + MIRb SINE MIR 94 169 -99 5 843 648 275 43 31 chr11 33826652 33827005 -88016851 + B4A SINE B4 2 278 -14 5 843 339 25 0 0 chr11 33827170 33827210 -88016646 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 5 843 555 43 0 0 chr11 33827210 33827279 -88016577 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 843 216 336 57 25 chr11 33827698 33827820 -88016036 - MIRm SINE MIR -102 174 49 5 843 1275 168 13 18 chr11 33828925 33829149 -88014707 - URR1B DNA MER1_type 0 225 3 5 843 402 293 70 53 chr11 33829212 33829439 -88014417 + MER33 DNA MER1_type 49 279 -45 5 843 927 178 102 60 chr11 33830115 33830330 -88013526 - URR1A DNA MER1_type 0 226 3 5 843 500 81 0 13 chr11 33830341 33830416 -88013440 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 843 462 65 0 0 chr11 33830434 33830496 -88013360 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 843 209 136 21 64 chr11 33831440 33831487 -88012369 - L2b LINE L2 -6 3369 3325 5 843 306 239 11 11 chr11 33831633 33831722 -88012134 + CT-rich Low_complexity Low_complexity 2 90 0 5 843 282 258 96 57 chr11 33832338 33832502 -88011354 - MIRb SINE MIR -90 178 5 5 843 290 324 119 9 chr11 33832714 33832823 -88011033 + Tigger7 DNA MER2_type 105 225 -2266 5 843 1345 222 54 25 chr11 33832826 33833140 -88010716 - MTD LTR MaLR 0 419 97 5 843 290 311 121 117 chr11 33833269 33833456 -88010400 + Tigger7 DNA MER2_type 223 415 -2076 5 843 1146 76 0 0 chr11 33833456 33833600 -88010256 - B1_Mus1 SINE Alu -3 145 2 5 843 290 311 121 117 chr11 33833600 33833652 -88010204 + Tigger7 DNA MER2_type 416 463 -2028 5 843 25 0 0 0 chr11 33835186 33835211 -88008645 + AT_rich Low_complexity Low_complexity 1 25 0 5 843 217 225 0 0 chr11 33835539 33835579 -88008277 + G-rich Low_complexity Low_complexity 5 44 0 5 843 603 314 128 36 chr11 33835996 33836247 -88007609 + B4A SINE B4 19 292 0 5 843 216 256 0 0 chr11 33836943 33836986 -88006870 + polypurine Low_complexity Low_complexity 5 47 0 5 843 190 292 111 19 chr11 33837073 33837181 -88006675 - MIR SINE MIR -31 231 114 5 843 1142 68 0 33 chr11 33838180 33838332 -88005524 + B1_Mus1 SINE Alu 2 148 0 5 843 187 54 26 26 chr11 33838332 33838370 -88005486 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 5 843 309 51 0 0 chr11 33840029 33840068 -88003788 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 5 843 241 322 43 56 chr11 33840105 33840266 -88003590 + RLTR14 LTR ERV1 224 382 0 5 843 362 247 69 43 chr11 33841336 33841501 -88002355 + RLTR6-int LTR ERV1 1312 1428 -6350 5 843 2003 176 85 3 chr11 33842556 33842920 -88000936 + ORR1B1 LTR MaLR 1 394 0 5 843 725 236 21 128 chr11 33843059 33843302 -88000554 + RMER19C LTR ERVK 63 279 -332 5 843 339 198 74 42 chr11 33843603 33843698 -88000158 + RLTR14 LTR ERV1 285 382 0 5 843 190 352 156 27 chr11 33844100 33844363 -87999493 - L2b LINE L2 -9 3366 3070 5 843 261 139 0 0 chr11 33844363 33844406 -87999450 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 5 843 280 253 91 11 chr11 33844567 33844655 -87999201 + MIR SINE MIR 11 105 -157 5 843 217 238 122 40 chr11 33845909 33846028 -87997828 - MIRm SINE MIR -80 182 53 5 843 3449 28 5 0 chr11 33846175 33846569 -87997287 + MTA_Mm LTR MaLR 1 396 0 5 843 23 33 0 0 chr11 33847386 33847416 -87996440 + AT_rich Low_complexity Low_complexity 1 30 0 5 843 402 334 148 19 chr11 33847504 33847821 -87996035 + MLT1H LTR MaLR 84 441 -108 5 843 632 217 7 7 chr11 33848801 33849263 -87994593 + (TG)n Simple_repeat Simple_repeat 1 461 0 5 843 288 0 0 0 chr11 33849298 33849330 -87994526 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 843 236 273 28 35 chr11 33849330 33849458 -87994398 - L1MA5A LINE L1 -135 6165 6037 5 843 27 29 0 0 chr11 33850083 33850117 -87993739 + AT_rich Low_complexity Low_complexity 1 34 0 5 843 246 335 21 59 chr11 33850132 33850319 -87993537 - B3A SINE B2 -18 180 1 5 843 287 259 116 37 chr11 33850440 33850604 -87993252 + Lx8 LINE L1 7296 7472 -1 5 843 28 0 0 0 chr11 33850604 33850632 -87993224 + AT_rich Low_complexity Low_complexity 1 28 0 5 843 515 230 89 18 chr11 33850651 33850819 -87993037 - B3A SINE B2 -18 180 1 5 843 522 291 99 36 chr11 33850819 33851040 -87992816 - MTEb LTR MaLR -5 374 140 5 843 228 323 0 0 chr11 33851044 33851109 -87992747 + MIR SINE MIR 81 145 -63 5 843 389 339 70 50 chr11 33851196 33851488 -87992368 + MLT1J2 LTR MaLR 43 302 -146 5 843 294 241 25 12 chr11 33851752 33851832 -87992024 - ID2 SINE ID -1 82 2 5 843 326 270 191 45 chr11 33851955 33852210 -87991646 + MLT1C LTR MaLR 187 472 -33 5 843 308 242 0 0 chr11 33852718 33852784 -87991072 - MER3 DNA MER1_type -20 189 124 5 843 353 315 107 32 chr11 33852862 33853049 -87990807 + MIR SINE MIR 45 245 -23 5 843 269 330 34 0 chr11 33854065 33854153 -87989703 - MER2B DNA MER2_type -1 335 245 5 843 365 178 13 64 chr11 33855393 33855471 -87988385 + RMER10A LTR ERVL 3 76 -366 5 843 339 85 0 0 chr11 33855515 33855562 -87988294 + (CCTG)n Simple_repeat Simple_repeat 1 47 0 5 843 369 123 0 0 chr11 33855562 33855627 -87988229 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 843 392 297 30 61 chr11 33855632 33855829 -87988027 + MLT1A1 LTR MaLR 213 403 -5 5 843 965 302 76 6 chr11 33856016 33856332 -87987524 + MTEb LTR MaLR 4 341 -38 5 843 567 0 0 0 chr11 33856993 33857056 -87986800 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 843 794 274 123 45 chr11 33857196 33857506 -87986350 - MER44A DNA MER2_type 0 339 6 5 843 431 258 88 25 chr11 33858049 33858208 -87985648 - Tigger7 DNA MER2_type -28 2463 2295 5 843 306 171 29 0 chr11 33858210 33858278 -87985578 - Tigger7 DNA MER2_type -2374 117 48 5 843 1636 164 182 7 chr11 33858278 33858613 -87985243 + ORR1B1 LTR MaLR 1 380 -14 5 843 1094 37 22 0 chr11 33858686 33858820 -87985036 + B1_Mus2 SINE Alu 2 138 -9 5 843 194 0 39 0 chr11 33858820 33858846 -87985010 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 843 467 309 67 67 chr11 33858854 33859048 -87984808 + ORR1E LTR MaLR 1 194 -165 5 843 514 131 61 61 chr11 33859363 33859440 -87984416 + ORR1B1 LTR MaLR 41 117 -277 5 843 3114 169 64 16 chr11 33859440 33860053 -87983803 + RLTR26 LTR ERVK 1 642 0 5 843 1514 151 46 15 chr11 33860053 33860316 -87983540 + ORR1A4 LTR MaLR 59 329 0 5 843 283 298 92 41 chr11 33860316 33860512 -87983344 - MLT1G3 LTR MaLR -31 564 359 5 843 274 310 77 65 chr11 33860526 33860695 -87983161 - MLT1G3 LTR MaLR -312 283 113 5 843 284 271 28 119 chr11 33861528 33861560 -87982296 + B4A SINE B4 186 215 -77 5 843 728 159 50 7 chr11 33861560 33861699 -87982157 - B1_Mur4 SINE Alu -4 146 2 5 843 284 271 28 119 chr11 33861699 33861775 -87982081 + B4A SINE B4 216 284 -8 5 843 187 183 36 24 chr11 33861793 33861877 -87981979 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 843 194 45 0 83 chr11 33862367 33862415 -87981441 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 5 843 333 238 0 24 chr11 33862750 33862832 -87981024 - MIR SINE MIR -69 139 60 5 843 189 0 0 0 chr11 33863259 33863280 -87980576 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 843 188 326 0 0 chr11 33863727 33863773 -87980083 - MIRc SINE MIR -175 93 48 5 843 182 298 0 17 chr11 33863994 33864052 -87979804 - L3b LINE CR1 -225 257 201 5 843 735 22 0 0 chr11 33864533 33864622 -87979234 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 5 843 342 296 0 60 chr11 33865744 33865877 -87977979 - MER5B DNA MER1_type -8 170 46 5 843 480 18 0 0 chr11 33866121 33866178 -87977678 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 843 183 248 191 38 chr11 33866521 33866626 -87977230 + MIRb SINE MIR 48 168 -100 6 843 279 310 159 20 chr11 33868658 33868859 -87974997 - MIRb SINE MIR -10 258 30 6 843 328 269 16 87 chr11 33869476 33869602 -87974254 + MER102b DNA MER1_type 38 154 -187 6 843 301 255 73 28 chr11 33869813 33869922 -87973934 - MIRc SINE MIR -121 147 34 6 843 238 314 35 14 chr11 33870790 33870932 -87972924 + RMER17D LTR ERVK 377 521 -368 6 843 407 291 94 0 chr11 33871089 33871206 -87972650 - MER2 DNA MER2_type -207 138 11 6 843 288 238 123 31 chr11 33871924 33872054 -87971802 + L1MD2 LINE L1 6218 6359 0 6 843 339 264 0 110 chr11 33872971 33872991 -87970865 - CYRA11_Mm Unknown Y-chromosome -215 402 398 6 843 750 181 0 8 chr11 33872991 33873108 -87970748 + URR1B DNA MER1_type 1 116 -109 6 843 288 308 61 66 chr11 33873115 33873296 -87970560 + Charlie1b DNA MER1_type 85 264 -259 6 843 718 257 26 14 chr11 33873296 33873458 -87970398 + B3A SINE B2 1 160 -38 6 843 318 106 0 0 chr11 33873458 33873505 -87970351 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 843 446 261 66 86 chr11 33873505 33873539 -87970317 + B2_Mm2 SINE B2 159 193 -2 6 843 394 217 276 36 chr11 33873515 33873740 -87970116 + Charlie1b DNA MER1_type 239 517 -6 6 843 1274 154 21 60 chr11 33873817 33874051 -87969805 + URR1B DNA MER1_type 1 225 0 6 843 508 246 130 27 chr11 33874849 33875033 -87968823 - MIR SINE MIR -1 261 59 6 843 186 294 129 45 chr11 33875400 33875532 -87968324 - L3 LINE CR1 -1188 3301 3159 6 843 337 383 80 6 chr11 33876078 33876241 -87967615 + MIRb SINE MIR 91 265 -3 6 843 427 297 64 30 chr11 33877134 33877330 -87966526 - MIR SINE MIR -64 204 1 6 843 207 0 0 0 chr11 33877492 33877515 -87966341 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 6 843 3767 295 82 44 chr11 33877692 33880218 -87963638 + L1_Mur3 LINE L1 1534 4153 -1727 6 843 228 309 0 0 chr11 33880884 33880939 -87962917 + polypyrimidine Low_complexity Low_complexity 1 55 0 6 843 197 304 127 82 chr11 33880945 33881103 -87962753 - L2b LINE L2 -24 3351 3187 6 843 568 258 101 25 chr11 33881574 33881733 -87962123 - MLT1B LTR MaLR -219 171 1 6 843 568 105 34 20 chr11 33882530 33882676 -87961180 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 843 479 85 61 15 chr11 33882700 33882832 -87961024 + (TG)n Simple_repeat Simple_repeat 2 139 0 6 843 480 18 0 0 chr11 33882832 33882889 -87960967 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 843 1832 166 16 6 chr11 33883198 33883519 -87960337 - Lx LINE L1 -15 6639 6316 6 843 360 0 0 0 chr11 33884091 33884131 -87959725 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 843 250 290 29 0 chr11 33884178 33884247 -87959609 + MLT1A0 LTR MaLR 63 133 -232 6 843 414 0 0 0 chr11 33885401 33885447 -87958409 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 843 212 327 139 26 chr11 33885461 33885612 -87958244 - MIRb SINE MIR -99 169 2 6 843 1555 131 5 0 chr11 33885989 33886210 -87957646 - URR1A DNA MER1_type 0 226 5 6 843 188 315 47 163 chr11 33886693 33886822 -87957034 - L3b LINE CR1 -31 451 338 6 843 753 125 0 0 chr11 33886840 33886960 -87956896 + (TA)n Simple_repeat Simple_repeat 1 120 0 6 843 339 258 153 25 chr11 33887156 33887319 -87956537 + MIRb SINE MIR 9 192 -76 6 843 213 65 0 0 chr11 33887432 33887463 -87956393 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 6 843 456 19 0 0 chr11 33888109 33888162 -87955694 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 843 955 276 87 31 chr11 33888162 33888416 -87955440 - B4A SINE B4 -23 269 2 6 843 557 271 38 0 chr11 33888481 33888614 -87955242 + RSINE1 SINE B4 3 140 -25 6 843 432 0 0 0 chr11 33888659 33888707 -87955149 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 843 322 208 25 25 chr11 33889130 33889209 -87954647 - PB1 SINE Alu -7 120 42 6 843 196 308 86 21 chr11 33889458 33889551 -87954305 - L2b LINE L2 -36 3339 3241 6 843 180 111 0 0 chr11 33890403 33890430 -87953426 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 843 459 0 0 0 chr11 33890854 33890905 -87952951 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 843 367 343 48 75 chr11 33894550 33894843 -87949013 - MLT2B3 LTR ERVL -229 286 2 6 843 232 195 0 0 chr11 33895756 33895797 -87948059 + B4A SINE B4 187 227 -65 6 843 558 0 0 0 chr11 33895910 33895972 -87947884 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 843 470 119 12 0 chr11 33896413 33896497 -87947359 + (GA)n Simple_repeat Simple_repeat 1 85 0 6 843 530 218 10 9 chr11 33896505 33896615 -87947241 - B1_Mur1 SINE Alu -12 137 35 6 843 247 351 33 78 chr11 33899219 33899463 -87944393 + MLT1D LTR MaLR 5 237 -268 6 843 324 0 0 0 chr11 33899531 33899567 -87944289 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 843 558 0 0 0 chr11 33899567 33899628 -87944228 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 843 239 311 0 0 chr11 33899632 33899693 -87944163 + MLT1D LTR MaLR 445 505 0 6 843 577 271 214 0 chr11 33900182 33900392 -87943464 - MER2 DNA MER2_type 0 345 91 6 843 592 184 18 9 chr11 33900452 33900562 -87943294 - RSINE1 SINE B4 -49 116 6 6 843 209 171 0 0 chr11 33900569 33900604 -87943252 + (CTG)n Simple_repeat Simple_repeat 1 35 0 6 843 585 297 100 67 chr11 33900894 33901255 -87942601 + MLT1A LTR MaLR 1 373 -1 6 843 725 96 10 92 chr11 33901423 33901618 -87942238 + GA-rich Low_complexity Low_complexity 2 180 0 6 843 201 337 63 0 chr11 33902944 33903039 -87940817 + L2a LINE L2 3317 3417 -9 6 843 262 351 27 33 chr11 33903253 33903390 -87940466 - MIR SINE MIR -84 184 45 6 843 522 287 142 80 chr11 33903663 33903834 -87940022 - L1MA6 LINE L1 -13 6287 6134 6 843 836 192 7 0 chr11 33903834 33903980 -87939876 - B1_Mur4 SINE Alu -3 147 1 6 843 522 289 141 73 chr11 33903980 33904258 -87939598 - L1MA6 LINE L1 -167 6133 5801 6 843 215 333 34 77 chr11 33904921 33905038 -87938818 - MIR3 SINE MIR -38 170 59 6 843 585 246 0 34 chr11 33905583 33905701 -87938155 - B1_Mur1 SINE Alu -33 116 3 6 843 315 0 0 0 chr11 33905701 33905736 -87938120 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 843 929 258 92 76 chr11 33906357 33906780 -87937076 - RMER13A LTR ERVK -430 430 1 6 843 332 241 48 12 chr11 33906829 33906913 -87936943 - MIRc SINE MIR -118 150 64 6 843 2526 145 41 95 chr11 33907650 33908207 -87935649 + RLTR24 LTR ERV1 2 528 -1 6 843 1086 101 0 0 chr11 33909220 33909378 -87934478 + (GGGGA)n Simple_repeat Simple_repeat 5 162 0 6 843 1250 87 38 0 chr11 33911215 33911239 -87932617 - B2_Mm1a SINE B2 -2 191 162 6 843 450 0 0 0 chr11 33911239 33911289 -87932567 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6 843 1250 87 38 0 chr11 33911289 33911448 -87932408 - B2_Mm1a SINE B2 -32 161 2 6 843 362 286 30 76 chr11 33911453 33911492 -87932364 - B2_Mm2 SINE B2 -6 189 2 6 843 650 278 51 19 chr11 33911492 33911650 -87932206 - RSINE1 SINE B4 0 165 3 6 843 405 0 0 0 chr11 33911707 33911752 -87932104 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 843 375 178 123 0 chr11 33911752 33911825 -87932031 - B3 SINE B2 -106 110 29 6 843 273 119 0 0 chr11 33912250 33912292 -87931564 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 6 843 368 143 0 7 chr11 33912293 33912358 -87931498 - B1_Mus2 SINE Alu -25 122 35 6 843 633 206 82 22 chr11 33912794 33912978 -87930878 + Lx7 LINE L1 7470 7664 -32 6 843 414 0 0 0 chr11 33912983 33913029 -87930827 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 6 843 917 330 89 16 chr11 33913177 33913726 -87930130 + Lx8 LINE L1 6883 7471 -2 6 843 414 199 153 27 chr11 33913737 33913887 -87929969 + Lx9 LINE L1 7378 7546 -98 6 843 5237 61 93 111 chr11 33913887 33914217 -87929639 + L1Md_Gf LINE L1 242 604 -5918 6 843 234 316 59 59 chr11 33914217 33914318 -87929538 + RLTR45 LTR ERVK 4 104 -378 6 843 5237 61 93 111 chr11 33914318 33914805 -87929051 + L1Md_Gf LINE L1 605 1142 -5380 6 843 36110 40 0 0 chr11 33914771 33919156 -87924700 + L1Md_T LINE L1 1203 5586 -297 6 843 8620 31 1 0 chr11 33919156 33920151 -87923705 + L1Md_T LINE L1 5587 6582 0 6 843 510 137 94 0 chr11 33920162 33920279 -87923577 + Lx9 LINE L1 7517 7644 0 6 843 392 268 14 14 chr11 33921058 33921282 -87922574 + (TGGA)n Simple_repeat Simple_repeat 1 224 0 6 843 204 370 0 27 chr11 33921292 33921367 -87922489 - L2c LINE L2 -27 3360 3288 6 843 717 118 0 0 chr11 33922231 33922341 -87921515 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 843 458 33 17 0 chr11 33922341 33922400 -87921456 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 843 371 312 9 60 chr11 33922402 33922518 -87921338 - RSINE1 SINE B4 -34 131 22 6 843 614 252 138 4 chr11 33922632 33922856 -87921000 - L1MC3 LINE L1 -6 7779 7549 6 843 1520 269 68 15 chr11 33922860 33923256 -87920600 + MTD LTR MaLR 1 417 -2 6 843 349 219 14 0 chr11 33923285 33923358 -87920498 - L1MC3 LINE L1 -324 7461 7388 6 843 569 269 104 69 chr11 33923394 33923515 -87920341 - L1MC3 LINE L1 -388 7397 7285 6 843 1993 172 49 21 chr11 33923515 33923943 -87919913 + RMER10A LTR ERVL 3 442 0 6 843 569 269 104 69 chr11 33923943 33924081 -87919775 - L1MC3 LINE L1 -501 7284 7129 6 843 527 218 82 0 chr11 33925464 33925574 -87918282 - RSINE1 SINE B4 -45 120 2 6 843 190 300 33 16 chr11 33926082 33926143 -87917713 - MIRm SINE MIR -1 275 214 6 843 225 0 0 0 chr11 33926175 33926200 -87917656 + (CAATA)n Simple_repeat Simple_repeat 4 28 0 6 843 223 281 0 18 chr11 33926357 33926430 -87917426 + MIR SINE MIR 91 163 -45 6 843 282 254 36 18 chr11 33926442 33926554 -87917302 - L1MB1 LINE L1 -537 5796 5680 6 843 800 272 47 77 chr11 33926557 33926802 -87917054 + L1MB1 LINE L1 5809 6037 -131 6 843 2965 87 26 0 chr11 33926802 33927192 -87916664 - MTB LTR MaLR 0 400 1 6 843 800 272 47 77 chr11 33927192 33927309 -87916547 + L1MB1 LINE L1 6038 6160 -8 6 843 234 336 9 27 chr11 33928999 33929109 -87914747 + RMER15 LTR ERVL 403 510 -65 6 843 352 365 34 8 chr11 33929352 33929620 -87914236 + L1ME4a LINE L1 5596 5870 -254 6 843 994 263 74 42 chr11 33929662 33929972 -87913884 + MER57D LTR ERV1 1 320 -91 6 843 291 261 94 47 chr11 33930522 33930671 -87913185 + MER57C2 LTR ERV1 248 426 -8 6 843 751 252 7 0 chr11 33930725 33930876 -87912980 + B3A SINE B2 1 152 -46 7 843 342 0 0 0 chr11 33930897 33930935 -87912921 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 843 238 77 77 0 chr11 33931062 33931114 -87912742 + A-rich Low_complexity Low_complexity 2 57 0 7 843 245 352 30 60 chr11 33932156 33932289 -87911567 + L2a LINE L2 3293 3421 -5 7 843 261 232 9 108 chr11 33932670 33932781 -87911075 + MLT1A0 LTR MaLR 27 126 -239 7 843 206 310 49 20 chr11 33933405 33933507 -87910349 + MIR3 SINE MIR 15 119 -89 7 843 263 320 82 46 chr11 33933558 33933777 -87910079 - L2a LINE L2 -2 3424 3198 7 843 866 242 119 119 chr11 33933796 33934175 -87909681 + MTE2a LTR MaLR 1 379 0 7 843 237 248 198 40 chr11 33934317 33934569 -87909287 + L2 LINE L2 2712 3003 -416 7 843 336 304 55 12 chr11 33934799 33934968 -87908888 - MIRc SINE MIR -65 197 24 7 843 303 353 129 6 chr11 33934971 33935142 -87908714 + MER3 DNA MER1_type 6 197 -12 7 843 507 285 169 28 chr11 33935312 33935525 -87908331 - MER2 DNA MER2_type -96 249 7 7 843 453 148 0 0 chr11 33935542 33935623 -87908233 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 843 186 133 0 0 chr11 33935649 33935679 -87908177 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 7 843 1162 91 34 11 chr11 33936740 33937263 -87906593 + (TCTA)n Simple_repeat Simple_repeat 1 534 0 7 843 224 170 19 0 chr11 33937297 33937350 -87906506 + (CCCA)n Simple_repeat Simple_repeat 3 56 0 7 843 209 195 24 0 chr11 33937358 33937399 -87906457 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 7 843 729 185 11 6 chr11 33937401 33937580 -87906276 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 843 225 224 0 0 chr11 33937604 33937662 -87906194 + (CCCA)n Simple_repeat Simple_repeat 2 59 0 7 843 432 326 100 33 chr11 33938167 33938214 -87905642 - MLT1D LTR MaLR 0 505 464 7 843 753 161 222 48 chr11 33938214 33938403 -87905453 - URR1A DNA MER1_type 0 226 5 7 843 432 326 100 33 chr11 33938403 33938656 -87905200 - MLT1D LTR MaLR -42 463 185 7 843 362 238 37 90 chr11 33938704 33938838 -87905018 - MIR SINE MIR -71 191 65 7 843 231 36 0 0 chr11 33939048 33939076 -87904780 + (CCA)n Simple_repeat Simple_repeat 3 30 0 7 843 822 231 6 13 chr11 33939261 33939419 -87904437 + B3 SINE B2 3 159 -57 7 843 405 0 0 0 chr11 33939420 33939465 -87904391 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 843 185 0 40 0 chr11 33939481 33939506 -87904350 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 843 1297 88 22 6 chr11 33939506 33939689 -87904167 - B2_Mm2 SINE B2 -9 186 1 7 843 229 222 24 0 chr11 33940745 33940791 -87903065 + ID4_ SINE ID 38 84 -68 7 843 241 67 0 0 chr11 33941397 33941427 -87902429 - L1_Mm LINE L1 -678 5205 5176 7 843 229 125 0 0 chr11 33941399 33941431 -87902425 - L1_Mur2 LINE L1 -680 5197 5166 7 843 3987 120 97 149 chr11 33941431 33942411 -87901445 - RLTR13B3 LTR ERVK 0 929 1 7 843 1933 97 0 0 chr11 33942425 33942682 -87901174 - ETnERV3-int LTR ERVK -28 5780 5524 7 843 186 167 0 0 chr11 33943013 33943049 -87900807 + A-rich Low_complexity Low_complexity 1 36 0 7 843 1160 111 10 39 chr11 33943513 33943719 -87900137 + L1_Mus3 LINE L1 6436 6635 -3 7 843 741 308 93 15 chr11 33944154 33944424 -87899432 + MER2 DNA MER2_type 3 293 -52 7 843 348 24 0 0 chr11 33944920 33944961 -87898895 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 843 210 71 0 0 chr11 33945476 33945504 -87898352 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 843 261 146 0 0 chr11 33945570 33945618 -87898238 + (ATTG)n Simple_repeat Simple_repeat 1 48 0 7 843 312 328 143 74 chr11 33945975 33946078 -87897778 + MamRep137 DNA TcMar? 51 183 -261 7 843 387 0 0 0 chr11 33946078 33946121 -87897735 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 843 312 328 143 74 chr11 33946121 33946353 -87897503 + MamRep137 DNA TcMar? 184 409 -35 7 843 587 14 14 0 chr11 33946980 33947052 -87896804 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 844 239 349 67 39 chr11 33948760 33948939 -87894917 + MIRb SINE MIR 36 219 -49 7 844 213 321 33 77 chr11 33949180 33949271 -87894585 + MIR SINE MIR 59 145 -63 7 844 261 296 28 0 chr11 33949283 33949354 -87894502 - MER5A DNA MER1_type 0 189 117 7 844 340 258 10 58 chr11 33949623 33949726 -87894130 - PB1D7 SINE Alu -2 118 21 7 844 207 0 0 0 chr11 33949726 33949749 -87894107 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 844 188 293 101 54 chr11 33951630 33951778 -87892078 - L3 LINE CR1 -23 4466 4312 7 844 202 261 116 74 chr11 33951877 33951972 -87891884 - MIR3 SINE MIR -25 183 85 7 844 210 245 0 39 chr11 33952737 33952788 -87891068 + polypyrimidine Low_complexity Low_complexity 3 51 0 7 844 702 236 10 86 chr11 33954695 33954734 -87889122 - B3A SINE B2 -5 193 161 7 844 186 43 0 0 chr11 33954734 33954757 -87889099 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 844 702 236 10 86 chr11 33954757 33954895 -87888961 - B3A SINE B2 -38 160 32 7 844 2762 204 94 85 chr11 33954895 33955845 -87888011 - RMER17B LTR ERVK 0 958 1 7 844 702 236 10 86 chr11 33955845 33955875 -87887981 - B3A SINE B2 -167 31 1 7 844 277 326 0 73 chr11 33956027 33956123 -87887733 + MER117 DNA MER1_type 109 197 0 7 844 245 355 119 40 chr11 33956297 33956523 -87887333 - Charlie8 DNA MER1_type -2124 304 61 7 844 278 338 12 48 chr11 33956904 33956988 -87886868 + MER44D DNA MER2_type 4 84 -621 7 844 450 0 0 0 chr11 33956992 33957042 -87886814 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 844 600 254 51 28 chr11 33957046 33957224 -87886632 + MER44D DNA MER2_type 485 666 -39 7 844 673 302 169 31 chr11 33957593 33958133 -87885723 + L1MEc LINE L1 243 856 -5544 7 844 909 256 181 44 chr11 33958325 33958685 -87885171 - MTD LTR MaLR -1 418 10 7 844 299 325 65 92 chr11 33958885 33959288 -87884568 + L1MEc LINE L1 1207 1598 -4802 7 844 184 319 29 0 chr11 33959541 33959610 -87884246 + L2a LINE L2 3345 3415 -11 7 844 256 314 77 50 chr11 33959629 33959810 -87884046 + L1MEc LINE L1 1697 1882 -4518 7 844 237 270 34 149 chr11 33959947 33960095 -87883761 + MT2B LTR ERVL 116 246 -355 7 844 525 291 14 34 chr11 33960007 33960153 -87883703 + ID_B1 SINE B4 82 224 0 7 844 428 295 40 9 chr11 33960469 33960641 -87883215 + MIR SINE MIR 19 202 -66 7 844 247 270 16 0 chr11 33960853 33960916 -87882940 + MIRc SINE MIR 101 164 -104 7 844 1732 259 22 37 chr11 33961141 33961599 -87882257 + Lx7 LINE L1 6869 7319 -377 7 844 852 125 0 0 chr11 33962936 33963096 -87880760 + (TC)n Simple_repeat Simple_repeat 2 161 0 7 844 201 74 0 0 chr11 33963542 33963569 -87880287 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 844 230 241 37 0 chr11 33964406 33964460 -87879396 + L2a LINE L2 3094 3149 -277 7 844 348 283 75 0 chr11 33964577 33964683 -87879173 + PB1D10 SINE Alu 1 114 -3 7 844 564 15 0 0 chr11 33964722 33964787 -87879069 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 844 270 0 0 0 chr11 33964801 33964831 -87879025 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 844 876 239 87 50 chr11 33964847 33965124 -87878732 - B4 SINE B4 -1 291 5 7 844 183 274 154 19 chr11 33965129 33965233 -87878623 + L2a LINE L2 3286 3403 -23 7 844 475 238 84 89 chr11 33965507 33965546 -87878310 + CYRA11_Mm Unknown Y-chromosome 144 181 -436 7 844 1253 146 51 14 chr11 33965546 33965761 -87878095 - URR1B DNA MER1_type -2 223 1 7 844 303 280 91 76 chr11 33966539 33966857 -87876999 - MTEa LTR MaLR -4 375 63 7 844 327 281 19 94 chr11 33967658 33967764 -87876092 - MTEa LTR MaLR -281 98 1 7 844 429 20 0 0 chr11 33967796 33967846 -87876010 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 844 279 237 140 30 chr11 33969632 33969732 -87874124 - MLT1A1 LTR MaLR -273 135 25 7 844 469 248 26 9 chr11 33970034 33970148 -87873708 - MER58B DNA MER1_type -24 317 202 7 844 195 69 0 0 chr11 33970694 33970723 -87873133 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 844 207 0 0 0 chr11 33971469 33971492 -87872364 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 7 844 215 328 22 66 chr11 33971990 33972127 -87871729 - L2b LINE L2 -269 3106 2976 7 844 304 273 26 0 chr11 33972219 33972296 -87871560 - MTC-int LTR MaLR -1147 111 33 7 844 849 45 0 0 chr11 33973164 33973274 -87870582 + (TTCTC)n Simple_repeat Simple_repeat 5 114 0 7 844 228 67 0 0 chr11 33973274 33973304 -87870552 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 7 844 689 149 41 8 chr11 33973338 33973460 -87870396 - B1_Mur3 SINE Alu 0 149 24 7 844 180 0 0 0 chr11 33975357 33975377 -87868479 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 844 459 48 0 0 chr11 33975377 33975439 -87868417 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 7 844 476 188 18 0 chr11 33975463 33975575 -87868281 + (CATA)n Simple_repeat Simple_repeat 2 115 0 7 844 279 0 0 0 chr11 33975597 33975628 -87868228 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 844 417 333 43 14 chr11 33975674 33975814 -87868042 - MIR SINE MIR -115 147 4 7 844 299 296 139 0 chr11 33976238 33976353 -87867503 - MIRc SINE MIR -98 170 40 7 844 187 299 0 105 chr11 33976469 33976555 -87867301 + MIR3 SINE MIR 84 160 -48 7 844 501 242 0 0 chr11 33977539 33977803 -87866053 + (CCA)n Simple_repeat Simple_repeat 1 264 0 7 844 200 97 0 31 chr11 33978892 33978924 -87864932 + (TGGGGG)n Simple_repeat Simple_repeat 2 32 0 7 844 263 272 46 39 chr11 33979194 33979324 -87864532 + MER96B DNA hAT 61 191 -226 7 844 695 170 7 22 chr11 33979369 33979640 -87864216 + CT-rich Low_complexity Low_complexity 1 266 0 7 844 197 346 102 51 chr11 33981088 33981225 -87862631 + MIRc SINE MIR 113 256 -12 7 844 21 36 0 0 chr11 33982066 33982094 -87861762 + AT_rich Low_complexity Low_complexity 1 28 0 7 844 280 290 41 11 chr11 33982574 33982672 -87861184 - ORR1E LTR MaLR 0 379 261 7 844 1069 151 151 0 chr11 33982672 33982864 -87860992 + URR1A DNA MER1_type 1 221 -5 7 844 657 320 48 71 chr11 33982868 33983204 -87860652 - MTD LTR MaLR -91 328 1 7 844 279 79 0 0 chr11 33983647 33983685 -87860171 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 844 470 296 86 29 chr11 33983864 33984003 -87859853 + ID_B1 SINE B4 78 224 0 8 844 255 302 131 25 chr11 33984078 33984200 -87859656 - MER5A1 DNA MER1_type -6 160 26 8 844 244 262 79 80 chr11 33984316 33984467 -87859389 - Charlie8 DNA MER1_type -2235 193 33 8 844 1566 245 88 10 chr11 33984529 33984917 -87858939 + Lx6 LINE L1 7017 7434 -26 8 844 487 59 0 0 chr11 33985459 33985527 -87858329 + L1Md_T LINE L1 6515 6582 0 8 844 261 139 0 0 chr11 33986209 33986252 -87857604 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 8 844 360 0 0 0 chr11 33988654 33988694 -87855162 + (TTA)n Simple_repeat Simple_repeat 3 42 0 8 844 191 326 29 39 chr11 33988694 33988796 -87855060 - MER5B DNA MER1_type -63 115 15 8 844 30 27 0 0 chr11 33990216 33990253 -87853603 + AT_rich Low_complexity Low_complexity 1 37 0 8 844 309 204 19 0 chr11 33990377 33990431 -87853425 + B3A SINE B2 8 62 -136 8 844 411 21 0 0 chr11 33991500 33991548 -87852308 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 844 488 297 175 9 chr11 33992017 33992228 -87851628 + Tigger5 DNA MER2_type 6 251 -2155 8 844 672 296 15 20 chr11 33992257 33992460 -87851396 + Tigger5 DNA MER2_type 2177 2378 -28 8 844 403 248 149 9 chr11 33993067 33993181 -87850675 + MTEa LTR MaLR 1 130 -249 8 844 611 250 75 35 chr11 33993192 33993366 -87850490 + MTEa LTR MaLR 186 366 -13 8 844 228 67 0 0 chr11 33993847 33993877 -87849979 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 8 844 34 42 0 0 chr11 33993906 33993954 -87849902 + AT_rich Low_complexity Low_complexity 1 48 0 8 844 22 0 0 0 chr11 33993975 33993997 -87849859 + AT_rich Low_complexity Low_complexity 1 22 0 8 844 1166 68 0 7 chr11 33994002 33994150 -87849706 - B1_Mus2 SINE Alu 0 147 1 8 844 189 0 0 0 chr11 33994196 33994217 -87849639 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 844 468 0 0 0 chr11 33994217 33994268 -87849588 + (GA)n Simple_repeat Simple_repeat 2 53 0 8 844 1158 94 117 0 chr11 33994647 33994818 -87849038 - B2_Mm2 SINE B2 -4 191 1 8 844 207 0 0 0 chr11 33994920 33994943 -87848913 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 844 744 253 124 10 chr11 33994965 33995280 -87848576 + MTD LTR MaLR 1 421 0 8 844 276 338 25 38 chr11 33995656 33995736 -87848120 - ID4_ SINE ID 0 83 5 8 844 640 251 38 44 chr11 33996900 33997083 -87846773 + B3A SINE B2 1 182 -16 8 844 23 0 0 0 chr11 33997083 33997106 -87846750 + AT_rich Low_complexity Low_complexity 1 23 0 8 844 208 355 62 31 chr11 33999422 33999518 -87844338 + MIR SINE MIR 35 133 -75 8 844 515 300 140 50 chr11 33999584 33999984 -87843872 - MER113 DNA MER1_type -65 456 21 8 844 312 296 86 34 chr11 34000262 34000437 -87843419 - MIRb SINE MIR -76 192 9 1 844 182 88 0 95 chr11 34000479 34000542 -87843314 + T-rich Low_complexity Low_complexity 4 60 0 2 844 5073 114 20 9 chr11 34000544 34001212 -87842644 + Lx2 LINE L1 6238 6913 -84 3 844 186 43 0 0 chr11 34001212 34001235 -87842621 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 4 844 5073 114 20 9 chr11 34001235 34001318 -87842538 + Lx2 LINE L1 6914 6996 -1 3 844 617 281 80 83 chr11 34001377 34001703 -87842153 + MLT1B LTR MaLR 62 386 -4 5 844 235 289 113 38 chr11 34002763 34002896 -87840960 - Charlie6 DNA MER1_type -1953 1547 1405 6 844 262 290 157 14 chr11 34003334 34003474 -87840382 + MER53 DNA hAT 33 192 -1 7 844 355 226 48 0 chr11 34003394 34003478 -87840378 - MER53 DNA hAT -99 94 7 8 844 267 357 56 21 chr11 34004894 34005037 -87838819 + L2 LINE L2 2731 2878 -541 9 844 806 157 0 7 chr11 34006577 34006864 -87836992 + (CA)n Simple_repeat Simple_repeat 1 284 0 1 844 282 87 0 0 chr11 34007427 34007473 -87836383 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 844 574 49 24 0 chr11 34007575 34007657 -87836199 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 1 844 217 238 0 0 chr11 34008027 34008069 -87835787 - MIRc SINE MIR -115 153 112 1 844 324 230 97 29 chr11 34008595 34008698 -87835158 - MER44B DNA MER2_type -96 454 345 1 844 1540 187 23 12 chr11 34008694 34009127 -87834729 - ORR1A4 LTR MaLR -14 405 93 1 844 617 123 258 37 chr11 34009127 34009283 -87834573 + ORR1A2 LTR MaLR 1 203 -143 1 844 458 109 164 0 chr11 34009395 34009485 -87834371 - ORR1A4 LTR MaLR -266 128 1 1 844 309 294 87 28 chr11 34009517 34009680 -87834176 - MTD LTR MaLR -201 178 1 1 844 1103 77 0 0 chr11 34010043 34010186 -87833670 - B1_Mus1 SINE Alu 0 148 6 1 844 2937 91 57 0 chr11 34010342 34010760 -87833096 + L1_Mus3 LINE L1 6195 6636 -2 1 844 239 271 89 89 chr11 34011778 34011936 -87831920 + MTE2b LTR MaLR 8 165 -194 2 844 305 298 48 24 chr11 34012589 34012713 -87831143 + L1MA5 LINE L1 6173 6299 -1 2 844 292 285 80 51 chr11 34013616 34013753 -87830103 - MIRm SINE MIR -127 149 9 2 844 419 260 20 20 chr11 34014133 34014235 -87829621 - MTEa LTR MaLR 0 379 278 2 844 1356 156 0 14 chr11 34014253 34014474 -87829382 - MTC LTR MaLR -8 413 196 2 844 5903 14 0 6 chr11 34014491 34015150 -87828706 - L1Md_F2 LINE L1 -14 6568 5914 2 844 6951 115 25 11 chr11 34015193 34016580 -87827276 - Lx LINE L1 0 6654 5250 2 844 1371 132 0 41 chr11 34016580 34016801 -87827055 - MTC LTR MaLR -209 212 1 2 844 644 279 25 30 chr11 34016875 34017078 -87826778 - ORR1E LTR MaLR -157 202 1 2 844 863 247 112 56 chr11 34017320 34017569 -87826287 + MTE2b LTR MaLR 25 287 -92 2 844 342 233 140 13 chr11 34017640 34017772 -87826084 + MTE2b LTR MaLR 215 369 -10 2 844 219 69 0 0 chr11 34018778 34018807 -87825049 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 2 844 335 333 92 66 chr11 34018819 34019047 -87824809 + MIRb SINE MIR 27 260 -8 3 844 737 239 13 0 chr11 34019182 34019337 -87824519 - RSINE1 SINE B4 0 165 9 3 844 759 274 166 11 chr11 34019950 34020401 -87823455 - Tigger2b DNA MER2_type -104 622 102 3 844 419 202 73 0 chr11 34021036 34021145 -87822711 + MER5C DNA MER1_type 114 230 -83 3 844 973 289 47 44 chr11 34021149 34021467 -87822389 - MER2 DNA MER2_type -6 339 21 3 844 1350 214 140 12 chr11 34021481 34021803 -87822053 - MTD LTR MaLR -15 404 42 3 844 554 0 15 0 chr11 34021812 34021878 -87821978 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 844 725 271 130 22 chr11 34022778 34023001 -87820855 + B4 SINE B4 4 250 -42 3 844 699 12 0 0 chr11 34023521 34023601 -87820255 + (TCC)n Simple_repeat Simple_repeat 2 81 0 3 844 263 296 18 35 chr11 34023601 34023735 -87820121 - ID2 SINE ID -27 125 1 3 844 653 74 0 21 chr11 34023856 34023953 -87819903 + (GGA)n Simple_repeat Simple_repeat 3 97 0 4 844 186 288 186 0 chr11 34024129 34024188 -87819668 + L3 LINE CR1 3519 3588 -901 4 844 1679 31 0 0 chr11 34025713 34025904 -87817952 - B2_Mm1a SINE B2 0 193 3 4 844 330 349 46 8 chr11 34025943 34026073 -87817783 - MER102a DNA MER1_type -81 249 115 4 844 372 22 0 0 chr11 34026078 34026123 -87817733 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 844 297 0 0 0 chr11 34026123 34026155 -87817701 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 844 700 258 0 42 chr11 34026155 34026345 -87817511 - B3A SINE B2 -16 182 1 4 844 1070 307 115 19 chr11 34026500 34027148 -87816708 + L1MB5 LINE L1 5461 6173 -1 4 844 189 0 0 0 chr11 34027320 34027341 -87816515 + (TAGA)n Simple_repeat Simple_repeat 4 24 0 4 844 405 0 0 0 chr11 34027361 34027406 -87816450 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 844 297 0 0 0 chr11 34027406 34027438 -87816418 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 844 327 306 116 61 chr11 34027482 34027775 -87816081 - L1MC5 LINE L1 -548 7413 7105 5 844 305 132 0 19 chr11 34028046 34028100 -87815756 - L1MC5 LINE L1 -1028 7014 6962 5 844 407 233 14 0 chr11 34028310 34028383 -87815473 + ID SINE ID 5 78 -146 5 844 396 205 12 82 chr11 34028383 34028395 -87815461 + ID4_ SINE ID 5 83 0 5 844 362 57 19 0 chr11 34028397 34028450 -87815406 + (CAAT)n Simple_repeat Simple_repeat 2 55 0 5 844 246 296 25 0 chr11 34029367 34029448 -87814408 - MIR SINE MIR -91 171 89 5 844 1498 201 117 27 chr11 34030091 34030199 -87813657 - Lx9 LINE L1 -2 7642 7537 5 844 477 47 0 0 chr11 34030199 34030263 -87813593 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 844 1498 201 117 27 chr11 34030263 34030600 -87813256 - Lx9 LINE L1 -108 7536 7158 5 844 339 284 62 16 chr11 34032005 34032134 -87811722 - MLT1B LTR MaLR 0 390 256 5 844 336 294 78 0 chr11 34032407 34032509 -87811347 - PB1D10 SINE Alu 0 117 8 5 844 779 231 77 0 chr11 34032867 34033049 -87810807 - B3A SINE B2 -1 197 2 6 844 264 305 53 99 chr11 34033678 34033849 -87810007 - L1MC4 LINE L1 -93 7949 7787 6 844 399 282 59 0 chr11 34034051 34034175 -87809681 + MIRb SINE MIR 19 162 -106 6 844 237 150 25 0 chr11 34034947 34034987 -87808869 + L2b LINE L2 3112 3152 -223 6 844 253 271 29 0 chr11 34035372 34035442 -87808414 + (GGGTG)n Simple_repeat Simple_repeat 3 74 0 6 844 522 310 0 34 chr11 34035707 34035854 -87808002 + MER2 DNA MER2_type 192 333 -12 6 844 556 14 27 0 chr11 34036049 34036122 -87807734 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 6 844 833 174 167 40 chr11 34036246 34036444 -87807412 - URR1B DNA MER1_type 0 225 3 6 844 453 219 107 25 chr11 34037364 34037486 -87806370 - MIRb SINE MIR -19 249 118 6 844 390 285 60 40 chr11 34038628 34038778 -87805078 + MER113 DNA MER1_type 30 182 -339 6 844 298 352 8 8 chr11 34040819 34040942 -87802914 - MIRb SINE MIR -36 232 110 7 844 361 325 9 0 chr11 34042541 34042655 -87801201 + PB1D10 SINE Alu 2 116 -1 7 844 259 154 15 15 chr11 34042718 34042784 -87801072 + GA-rich Low_complexity Low_complexity 1 66 0 7 844 324 229 14 7 chr11 34042883 34043024 -87800832 + (TG)n Simple_repeat Simple_repeat 2 143 0 7 844 526 297 7 0 chr11 34043791 34043939 -87799917 - B1F1 SINE Alu 0 149 1 7 844 1214 36 0 0 chr11 34045693 34045832 -87798024 + B1_Mus1 SINE Alu 1 139 -9 7 844 378 0 0 0 chr11 34045832 34045874 -87797982 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 844 684 0 0 0 chr11 34045893 34045969 -87797887 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 7 844 1099 53 0 0 chr11 34046508 34046641 -87797215 - B1_Mus2 SINE Alu -5 142 10 7 844 345 260 58 20 chr11 34046641 34046803 -87797053 - L1ME1 LINE L1 -4 6175 6000 7 844 200 373 40 0 chr11 34047162 34047237 -87796619 + MIRb SINE MIR 102 179 -89 8 844 201 268 69 14 chr11 34047283 34047355 -87796501 + MIR3 SINE MIR 110 185 -23 8 844 556 196 9 9 chr11 34048851 34048959 -87794897 - B1_Mur3 SINE Alu 0 149 42 8 844 232 106 0 175 chr11 34048908 34048965 -87794891 - 4.5SRNA scRNA scRNA -8 86 40 8 844 294 0 0 160 chr11 34048968 34049118 -87794738 + (CTCTG)n Simple_repeat Simple_repeat 5 130 0 8 844 321 146 0 68 chr11 34049119 34049178 -87794678 - B1_Mus2 SINE Alu -88 59 5 8 844 247 248 68 96 chr11 34050130 34050262 -87793594 - MIRb SINE MIR -104 158 34 8 844 188 209 0 44 chr11 34051137 34051182 -87792674 + L4 LINE RTE 1386 1428 -601 8 844 298 244 58 58 chr11 34052069 34052156 -87791700 + PB1D10 SINE Alu 21 107 -10 8 844 306 206 13 27 chr11 34052171 34052246 -87791610 + HAL1-3A_ME LINE L1 1976 2049 -809 8 844 201 156 0 0 chr11 34052246 34052278 -87791578 + GA-rich Low_complexity Low_complexity 1 32 0 9 844 798 154 0 0 chr11 34052735 34052884 -87790972 + (TG)n Simple_repeat Simple_repeat 1 149 0 9 844 386 255 81 10 chr11 34052884 34052983 -87790873 - PB1D10 SINE Alu -10 107 2 9 844 244 250 25 111 chr11 34052925 34053006 -87790850 - ID_B1 SINE B4 -82 142 69 9 844 342 284 92 7 chr11 34053437 34053579 -87790277 - MIR SINE MIR -78 184 31 9 844 486 0 0 0 chr11 34053734 34053788 -87790068 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 844 409 330 91 11 chr11 34054010 34054197 -87789659 - MER113 DNA MER1_type 0 521 320 9 844 245 320 42 34 chr11 34054826 34054971 -87788885 - MIR SINE MIR -93 169 26 9 844 472 204 48 10 chr11 34056923 34057027 -87786829 - PB1D10 SINE Alu -1 116 9 9 844 257 312 32 89 chr11 34056976 34057099 -87786757 - B4A SINE B4 -146 146 31 9 844 180 273 73 0 chr11 34057188 34057243 -87786613 - MIRc SINE MIR -114 154 96 1 844 427 245 27 9 chr11 34057734 34057845 -87786011 - PB1D10 SINE Alu 0 117 5 1 844 344 211 93 34 chr11 34058502 34058620 -87785236 - MIRm SINE MIR -97 179 55 1 844 207 204 0 0 chr11 34059610 34059654 -87784202 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1 844 249 257 0 75 chr11 34060357 34060437 -87783419 + MER20 DNA MER1_type 38 111 -108 1 844 337 336 33 0 chr11 34061234 34061356 -87782500 - MIRc SINE MIR -107 161 36 1 844 1657 202 78 12 chr11 34061378 34061724 -87782132 - ORR1D2 LTR MaLR 0 370 2 1 844 235 243 135 0 chr11 34062896 34062970 -87780886 + MIR SINE MIR 118 201 -61 1 844 640 231 66 76 chr11 34063621 34063832 -87780024 + ID_B1 SINE B4 3 211 -13 1 844 537 16 0 0 chr11 34063832 34063894 -87779962 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 844 304 267 44 0 chr11 34064177 34064267 -87779589 - MER31B LTR ERV1 -134 332 239 1 844 277 327 71 125 chr11 34064268 34064635 -87779221 - MLT1A LTR MaLR 0 374 28 1 844 270 0 0 0 chr11 34064833 34064863 -87778993 + (A)n Simple_repeat Simple_repeat 1 30 0 1 844 626 280 130 26 chr11 34065054 34065362 -87778494 + L1MC LINE L1 4515 4854 -1292 1 844 339 209 77 0 chr11 34065477 34065568 -87778288 - PB1D10 SINE Alu -1 116 19 1 844 417 246 77 62 chr11 34065632 34065840 -87778016 + L1MC LINE L1 4906 5116 -1030 1 844 227 228 35 0 chr11 34066022 34066079 -87777777 + CT-rich Low_complexity Low_complexity 3 61 0 1 844 1238 202 14 0 chr11 34066996 34067209 -87776647 - URR1B DNA MER1_type 0 225 10 1 844 1018 231 19 5 chr11 34067355 34067568 -87776288 + B3 SINE B2 1 216 0 1 844 198 0 0 0 chr11 34068960 34068982 -87774874 + (T)n Simple_repeat Simple_repeat 1 22 0 1 844 253 278 80 44 chr11 34070512 34070625 -87773231 - MIRm SINE MIR -138 138 22 1 844 504 258 186 28 chr11 34070850 34071072 -87772784 - MLT1A0 LTR MaLR -112 262 12 1 844 275 200 100 0 chr11 34071101 34071161 -87772695 - MER20 DNA MER1_type -136 83 18 1 844 868 209 120 5 chr11 34071852 34072044 -87771812 - B3 SINE B2 -2 214 1 1 844 412 278 65 0 chr11 34072390 34072498 -87771358 - PB1D10 SINE Alu -2 115 1 1 844 205 255 38 38 chr11 34072647 34072700 -87771156 + MIRb SINE MIR 124 176 -92 1 844 420 292 99 35 chr11 34073285 34073487 -87770369 - MIRb SINE MIR 0 268 54 1 844 244 239 15 15 chr11 34073506 34073574 -87770282 + MTEb LTR MaLR 304 371 -8 1 844 902 155 0 21 chr11 34073585 34073730 -87770126 + B1_Mur4 SINE Alu 9 150 0 1 844 327 49 0 0 chr11 34073735 34073776 -87770080 + (GGA)n Simple_repeat Simple_repeat 3 43 0 1 844 291 284 90 64 chr11 34074063 34074212 -87769644 + MIRb SINE MIR 45 200 -68 1 844 312 338 0 0 chr11 34074784 34074864 -87768992 - MLT1J LTR MaLR -202 310 231 1 844 910 162 0 0 chr11 34074883 34075025 -87768831 - B1_Mus1 SINE Alu 0 148 7 1 844 180 0 0 0 chr11 34075780 34075800 -87768056 + (T)n Simple_repeat Simple_repeat 1 20 0 1 844 182 340 0 0 chr11 34075983 34076036 -87767820 - MIRb SINE MIR -102 166 114 1 844 248 173 39 0 chr11 34077080 34077132 -87766724 - MLT2C2 LTR ERVL -2 557 504 1 844 230 231 0 15 chr11 34077151 34077217 -87766639 + G-rich Low_complexity Low_complexity 5 69 0 1 844 363 354 0 0 chr11 34077238 34077368 -87766488 + (TG)n Simple_repeat Simple_repeat 2 131 0 1 844 249 250 105 116 chr11 34077375 34077452 -87766404 - B4 SINE B4 -6 286 209 1 844 2441 172 32 5 chr11 34077452 34077860 -87765996 - MTC LTR MaLR 0 421 3 1 844 571 250 349 18 chr11 34077860 34078017 -87765839 - B4 SINE B4 -84 208 1 1 845 229 304 74 74 chr11 34080091 34080226 -87763630 + MLT1D LTR MaLR 1 135 -370 1 845 201 202 143 40 chr11 34080890 34080999 -87762857 + MIRb SINE MIR 38 160 -116 1 845 243 0 0 0 chr11 34081009 34081036 -87762820 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 845 357 319 53 18 chr11 34081162 34081331 -87762525 - MIR SINE MIR -6 256 82 1 845 309 250 104 45 chr11 34082560 34082694 -87761162 + Cheshire DNA MER1_type 73 214 -2206 1 845 487 297 184 16 chr11 34082790 34083105 -87760751 + Cheshire DNA MER1_type 2052 2419 -1 1 845 1087 248 24 33 chr11 34083176 34083505 -87760351 + RLTR15 LTR ERVK 1 326 -33 1 845 182 136 0 22 chr11 34084859 34084904 -87758952 + T-rich Low_complexity Low_complexity 2 45 0 1 845 374 232 9 0 chr11 34086404 34086516 -87757340 + CT-rich Low_complexity Low_complexity 3 115 0 1 845 801 211 7 7 chr11 34086789 34086937 -87756919 - B1_Mur2 SINE Alu 0 149 2 1 845 2169 163 67 3 chr11 34087091 34087466 -87756390 - MTC LTR MaLR -14 407 9 1 845 760 246 77 5 chr11 34087662 34087858 -87755998 - MER2 DNA MER2_type -32 313 104 1 845 728 291 57 86 chr11 34087859 34088160 -87755696 + B4A SINE B4 1 292 0 1 845 532 337 98 29 chr11 34090223 34090538 -87753318 - Tigger5 DNA MER2_type -19 347 11 1 845 469 331 43 25 chr11 34090657 34090936 -87752920 - L1ME2 LINE L1 -9 6155 5872 1 845 683 306 74 48 chr11 34090952 34091599 -87752257 - L1MEf LINE L1 -3377 2769 2096 1 845 1909 304 21 36 chr11 34091713 34092434 -87751422 - Lx9 LINE L1 -172 7472 6692 1 845 333 306 109 58 chr11 34092650 34092806 -87751050 - L1ME2 LINE L1 -298 5866 5703 1 845 830 255 178 17 chr11 34093205 34093492 -87750364 + Lx8 LINE L1 7136 7468 -5 1 845 25 51 0 0 chr11 34093495 34093534 -87750322 + AT_rich Low_complexity Low_complexity 1 39 0 1 845 259 378 85 33 chr11 34093547 34093700 -87750156 + MIR3 SINE MIR 37 197 -11 1 845 182 284 122 0 chr11 34093733 34093807 -87750049 + MIRc SINE MIR 32 114 -154 1 845 206 276 67 33 chr11 34093778 34093868 -87749988 + L3 LINE CR1 701 793 -3696 1 845 287 330 0 0 chr11 34094317 34094411 -87749445 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 845 375 337 91 10 chr11 34094488 34094686 -87749170 - MER113 DNA MER1_type -66 455 242 1 845 375 319 75 14 chr11 34095073 34095219 -87748637 + RSINE1 SINE B4 11 165 0 1 845 193 246 61 15 chr11 34095616 34095682 -87748174 - MIRc SINE MIR -181 87 19 1 845 431 189 0 82 chr11 34096740 34096936 -87746920 + C-rich Low_complexity Low_complexity 1 180 0 1 845 205 328 0 0 chr11 34097208 34097269 -87746587 + MIRm SINE MIR 216 276 0 1 845 747 303 54 12 chr11 34097314 34097724 -87746132 - MER90a LTR ERV1 -38 576 106 1 845 211 311 74 49 chr11 34098462 34098669 -87745187 - MIRm SINE MIR -38 224 12 1 845 715 304 71 35 chr11 34099631 34099941 -87743915 + MER63D DNA AcHobo 12 332 -729 1 845 502 113 0 0 chr11 34100176 34100247 -87743609 - B1_Mus1 SINE Alu -76 72 2 1 845 294 284 118 81 chr11 34100247 34100389 -87743467 - MT2B LTR ERVL -444 157 8 1 845 407 254 39 10 chr11 34100247 34100283 -87743573 - B4 SINE B4 -132 156 44 1 845 565 313 129 39 chr11 34100564 34100843 -87743013 - ORR1E LTR MaLR 0 359 56 1 845 234 307 35 106 chr11 34100880 34100993 -87742863 - ORR1E LTR MaLR -274 105 1 1 845 351 313 22 30 chr11 34101288 34101423 -87742433 + MIR SINE MIR 16 149 -113 1 845 183 289 19 0 chr11 34101832 34101884 -87741972 + MIR SINE MIR 105 157 -105 1 845 320 352 67 22 chr11 34105048 34105272 -87738584 + MIRb SINE MIR 33 266 -2 1 845 396 0 0 0 chr11 34106254 34106298 -87737558 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 845 186 198 35 68 chr11 34107240 34107307 -87736549 - MIRm SINE MIR -59 149 85 1 845 249 349 11 14 chr11 34108280 34108492 -87735364 + CT-rich Low_complexity Low_complexity 1 211 0 1 845 207 49 73 0 chr11 34108540 34108581 -87735275 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 1 845 593 146 29 0 chr11 34108721 34108858 -87734998 + CT-rich Low_complexity Low_complexity 1 141 0 1 845 481 183 26 7 chr11 34108857 34109011 -87734845 + (CA)n Simple_repeat Simple_repeat 1 157 0 1 845 315 0 0 0 chr11 34109289 34109324 -87734532 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 845 322 360 70 33 chr11 34110109 34110379 -87733477 + L1ME4a LINE L1 5621 5900 -224 1 845 708 248 14 0 chr11 34110548 34110693 -87733163 + B3A SINE B2 2 148 -50 1 845 462 18 0 0 chr11 34110693 34110748 -87733108 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 845 250 338 76 25 chr11 34110754 34110912 -87732944 + MIR SINE MIR 35 200 -62 1 845 354 361 72 0 chr11 34111695 34111861 -87731995 + MIR SINE MIR 49 226 -36 1 845 201 237 0 0 chr11 34112468 34112506 -87731350 + MIR SINE MIR 113 150 -58 1 845 716 184 5 27 chr11 34114056 34114240 -87729616 + CT-rich Low_complexity Low_complexity 1 180 0 1 845 206 139 0 44 chr11 34114253 34114298 -87729558 + CT-rich Low_complexity Low_complexity 3 45 0 1 845 714 275 125 77 chr11 34115664 34115931 -87727925 + MER2 DNA MER2_type 2 292 -53 1 845 3410 49 5 0 chr11 34115931 34116342 -87727514 - L1Md_F3 LINE L1 -12 6572 6160 1 845 714 275 125 77 chr11 34116342 34116401 -87727455 + MER2 DNA MER2_type 293 344 -1 1 845 213 39 0 0 chr11 34116788 34116814 -87727042 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 845 1470 247 36 70 chr11 34116814 34117167 -87726689 + MTD LTR MaLR 21 375 -44 1 845 1249 34 7 0 chr11 34117167 34117314 -87726542 - B1_Mus1 SINE Alu 0 148 1 1 845 1470 247 36 70 chr11 34117314 34117373 -87726483 + MTD LTR MaLR 376 419 0 1 845 244 263 87 48 chr11 34117767 34117871 -87725985 + LTR16D1 LTR ERVL 241 348 -327 1 845 263 206 162 0 chr11 34118081 34118149 -87725707 - MER5A1 DNA MER1_type -15 151 73 1 845 790 330 58 50 chr11 34118569 34119070 -87724786 - MLT1D LTR MaLR 0 505 1 1 845 1055 215 90 76 chr11 34119359 34119727 -87724129 + ORR1D1 LTR MaLR 1 373 -1 1 845 1326 100 0 0 chr11 34120337 34120754 -87723102 + (CA)n Simple_repeat Simple_repeat 1 417 0 1 845 1031 113 0 0 chr11 34120803 34120944 -87722912 + B1_Mus1 SINE Alu 2 142 -6 2 845 225 0 0 0 chr11 34120947 34120972 -87722884 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 845 261 0 0 0 chr11 34121631 34121660 -87722196 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 845 485 285 180 60 chr11 34121737 34122084 -87721772 - MLT1C LTR MaLR 0 467 17 2 845 2004 111 35 71 chr11 34122084 34122423 -87721433 - ORR1A2 LTR MaLR 0 327 1 2 845 294 287 11 84 chr11 34122423 34122437 -87721419 - MLT1C LTR MaLR -447 20 8 2 845 445 333 104 37 chr11 34122457 34122859 -87720997 + ERVL-E-int LTR ERVL 4804 5232 -435 2 845 519 202 0 0 chr11 34123122 34123231 -87720625 + (CTCTG)n Simple_repeat Simple_repeat 5 113 0 2 845 954 171 0 0 chr11 34123245 34123421 -87720435 + (CTCTG)n Simple_repeat Simple_repeat 1 176 0 2 845 913 163 0 11 chr11 34123453 34123633 -87720223 + (CTCTG)n Simple_repeat Simple_repeat 1 178 0 2 845 229 284 40 13 chr11 34123973 34124048 -87719808 + MIRc SINE MIR 32 108 -160 2 845 348 276 20 10 chr11 34124088 34124187 -87719669 + ORR1E LTR MaLR 5 104 -255 2 845 314 243 34 93 chr11 34124274 34124392 -87719464 + ORR1E LTR MaLR 245 355 -24 2 845 318 358 48 53 chr11 34124719 34125087 -87718769 + MLT1A1 LTR MaLR 7 407 -1 2 845 214 196 176 0 chr11 34126217 34126268 -87717588 + MIR SINE MIR 114 173 -89 2 845 196 255 19 19 chr11 34127937 34127989 -87715867 + MIRb SINE MIR 184 235 -33 2 845 195 69 0 0 chr11 34129606 34129635 -87714221 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 845 360 308 0 0 chr11 34130108 34130212 -87713644 - B1F SINE Alu -5 144 41 2 845 26 30 0 0 chr11 34130224 34130257 -87713599 + AT_rich Low_complexity Low_complexity 1 33 0 2 845 528 150 26 0 chr11 34130299 34130412 -87713444 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 845 368 295 62 0 chr11 34131034 34131146 -87712710 + MIRb SINE MIR 39 157 -111 2 845 504 339 54 87 chr11 34131938 34132271 -87711585 + MER21B LTR ERV1 138 459 -404 2 845 277 256 83 25 chr11 34134619 34134739 -87709117 + L1M2 LINE L1 2566 2692 -3451 2 845 305 347 37 15 chr11 34134770 34135009 -87708847 - L1M2 LINE L1 -3155 2985 2736 2 845 235 295 106 9 chr11 34135063 34135176 -87708680 + L1ME3A LINE L1 5535 5658 -582 2 845 301 332 53 68 chr11 34135798 34136005 -87707851 + L1ME3A LINE L1 5969 6172 -1 2 845 234 306 93 12 chr11 34136222 34136308 -87707548 + L2b LINE L2 3263 3355 -20 2 845 226 313 12 35 chr11 34136674 34136760 -87707096 + MLT1E1 LTR MaLR 394 477 -177 2 845 263 301 35 9 chr11 34137420 34137534 -87706322 + GA-rich Low_complexity Low_complexity 5 121 0 2 845 215 258 113 0 chr11 34138503 34138565 -87705291 + MER5A DNA MER1_type 48 116 -73 2 845 471 294 71 33 chr11 34140269 34140480 -87703376 - MER58A DNA MER1_type -1 223 5 2 845 276 383 0 38 chr11 34140510 34140643 -87703213 + MIRc SINE MIR 61 188 -80 2 845 203 300 37 24 chr11 34140785 34140867 -87702989 + MIRb SINE MIR 147 229 -39 2 845 1775 154 125 15 chr11 34141007 34141344 -87702512 + ORR1D1 LTR MaLR 1 374 0 2 845 246 309 65 9 chr11 34141422 34141530 -87702326 - ORR1E LTR MaLR -2 357 244 2 845 769 256 40 0 chr11 34142440 34142616 -87701240 + ORR1D2 LTR MaLR 1 183 -187 2 845 2232 97 55 0 chr11 34143559 34143867 -87699989 + ORR1A2 LTR MaLR 3 327 0 2 845 1367 104 0 10 chr11 34143983 34144178 -87699678 + B2_Mm2 SINE B2 2 194 -1 2 845 258 206 0 0 chr11 34144319 34144387 -87699469 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 845 508 301 194 38 chr11 34144387 34144680 -87699176 - MTEa LTR MaLR -40 339 1 2 845 829 330 94 9 chr11 34145209 34145527 -87698329 - MER2 DNA MER2_type 0 345 1 2 845 281 175 47 16 chr11 34145527 34145591 -87698265 + MIRb SINE MIR 160 225 -43 2 845 278 248 218 0 chr11 34145769 34145902 -87697954 + MIRb SINE MIR 93 254 -14 2 845 746 225 41 21 chr11 34146202 34146347 -87697509 + B1_Mur3 SINE Alu 1 148 -1 2 845 208 264 0 0 chr11 34146359 34146412 -87697444 + A-rich Low_complexity Low_complexity 1 53 0 2 845 462 254 83 90 chr11 34146835 34146991 -87696865 + RSINE1 SINE B4 11 165 0 2 845 300 162 28 28 chr11 34146999 34147107 -87696749 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 845 931 103 23 0 chr11 34147111 34147286 -87696570 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2 845 360 277 75 0 chr11 34148067 34148161 -87695695 + Charlie24 DNA MER1_type 2347 2447 -3 2 845 303 360 20 0 chr11 34150235 34150335 -87693521 - MIRc SINE MIR -145 123 22 2 845 180 0 0 0 chr11 34150530 34150550 -87693306 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 2 845 433 267 50 0 chr11 34150559 34150679 -87693177 + MER5A1 DNA MER1_type 39 164 -2 2 845 293 247 0 79 chr11 34150765 34150866 -87692990 + MER117 DNA MER1_type 104 196 -1 2 845 997 94 0 0 chr11 34151620 34151758 -87692098 - B2_Mm2 SINE B2 -56 139 2 2 845 280 319 80 60 chr11 34151995 34152145 -87691711 + MIR SINE MIR 17 169 -93 2 845 239 299 97 53 chr11 34152238 34152351 -87691505 + MIR3 SINE MIR 6 123 -85 2 845 247 283 114 9 chr11 34154015 34154129 -87689727 - MER2 DNA MER2_type -97 248 123 2 845 490 321 35 5 chr11 34154918 34155115 -87688741 + MER20 DNA MER1_type 17 219 0 2 845 185 294 22 76 chr11 34155218 34155310 -87688546 + MER5B DNA MER1_type 20 106 -72 2 845 290 331 49 43 chr11 34155631 34155795 -87688061 + Charlie1 DNA MER1_type 12 176 -2605 2 845 344 267 32 12 chr11 34155891 34155993 -87687863 - B1_Mur1 SINE Alu -1 148 34 2 845 529 302 74 45 chr11 34155992 34156235 -87687621 + Charlie1 DNA MER1_type 2532 2781 0 2 845 414 0 0 0 chr11 34159314 34159360 -87684496 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 845 183 313 102 83 chr11 34159909 34160017 -87683839 - L2c LINE L2 -226 3161 3052 2 845 188 164 90 90 chr11 34160181 34160248 -87683608 - L2a LINE L2 -86 3340 3274 2 845 230 359 94 60 chr11 34160997 34161338 -87682518 - L2a LINE L2 -7 3368 3027 2 845 250 263 0 17 chr11 34162623 34162681 -87681175 - MIRb SINE MIR 0 268 212 2 845 242 223 25 67 chr11 34162689 34162809 -87681047 + (CTATG)n Simple_repeat Simple_repeat 3 117 0 2 845 382 297 71 119 chr11 34162812 34162857 -87680999 - ID_B1 SINE B4 -48 244 82 2 845 467 264 66 8 chr11 34162857 34162979 -87680877 - B1F1 SINE Alu -20 129 1 2 845 259 277 0 30 chr11 34162981 34163048 -87680808 - MIRb SINE MIR -47 221 157 2 845 405 0 0 0 chr11 34163778 34163823 -87680033 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 845 891 151 259 0 chr11 34163825 34163991 -87679865 - B3 SINE B2 -7 209 1 2 845 383 272 93 42 chr11 34164353 34164579 -87679277 - MER102b DNA MER1_type -64 277 39 2 845 297 0 0 0 chr11 34165538 34165571 -87678285 + (T)n Simple_repeat Simple_repeat 1 33 0 2 845 794 228 0 87 chr11 34165702 34165875 -87677981 - RSINE1 SINE B4 0 165 8 2 845 236 251 141 77 chr11 34166783 34166881 -87676975 - B1F1 SINE Alu -21 99 1 2 845 224 30 30 0 chr11 34166889 34166922 -87676934 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 845 811 280 6 17 chr11 34166933 34167111 -87676745 - B3A SINE B2 -16 182 7 2 845 192 261 0 61 chr11 34167738 34167787 -87676069 - MIRm SINE MIR -115 161 116 2 845 407 309 55 72 chr11 34168337 34168690 -87675166 + L1MC4a LINE L1 5536 5879 -2003 2 845 294 262 95 18 chr11 34168784 34168907 -87674949 - MIR SINE MIR -72 196 55 2 845 183 284 143 31 chr11 34169322 34169420 -87674436 - MIR SINE MIR -109 153 45 2 845 252 86 0 0 chr11 34169529 34169564 -87674292 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 2 845 1149 111 0 0 chr11 34169564 34169736 -87674120 + (GGAGA)n Simple_repeat Simple_repeat 5 176 0 2 845 345 297 134 55 chr11 34170040 34170204 -87673652 + MER5B DNA MER1_type 1 177 -1 2 845 214 194 0 0 chr11 34171456 34171492 -87672364 - MIRc SINE MIR -121 147 112 2 845 452 269 52 30 chr11 34172271 34172405 -87671451 - MIRb SINE MIR -71 197 61 2 845 259 304 89 21 chr11 34172420 34172623 -87671233 + L1MB8 LINE L1 5349 5565 -613 2 845 318 333 74 98 chr11 34172819 34173075 -87670781 + L1MB8 LINE L1 5915 6164 -14 2 845 437 306 196 22 chr11 34174187 34174498 -87669358 + MLT1K LTR MaLR 100 464 -131 2 845 318 67 0 0 chr11 34174541 34174586 -87669270 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 845 180 0 0 0 chr11 34174643 34174663 -87669193 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 845 266 135 39 0 chr11 34175647 34175699 -87668157 + GA-rich Low_complexity Low_complexity 3 56 0 2 845 697 276 80 64 chr11 34176022 34176336 -87667520 + ORR1E LTR MaLR 7 325 -34 2 845 437 311 92 11 chr11 34176437 34176622 -87667234 - MER58A DNA MER1_type 0 224 25 2 845 191 288 85 0 chr11 34178409 34178468 -87665388 - L2a LINE L2 0 3426 3363 2 845 5519 87 91 2 chr11 34181185 34182000 -87661856 - RMER17D LTR ERVK -2 887 1 2 845 295 194 13 53 chr11 34184042 34184118 -87659738 + B4 SINE B4 5 77 -215 2 845 240 200 0 0 chr11 34184303 34184363 -87659493 + CT-rich Low_complexity Low_complexity 3 62 0 2 845 304 282 135 43 chr11 34185440 34185603 -87658253 + HAL1-3A_ME LINE L1 1895 2072 -786 2 845 265 235 14 68 chr11 34186909 34186982 -87656874 + MER33 DNA MER1_type 32 100 -224 2 845 249 229 22 78 chr11 34186994 34187024 -87656832 - YREP_Mm Unknown Unknown -1471 341 317 2 845 714 65 0 0 chr11 34187024 34187116 -87656740 + B1_Mm SINE Alu 1 92 -55 2 845 31 76 0 0 chr11 34187197 34187263 -87656593 + AT_rich Low_complexity Low_complexity 1 66 0 2 845 290 282 13 0 chr11 34187284 34187362 -87656494 - ID4 SINE ID 0 83 5 2 845 382 256 0 0 chr11 34187512 34187594 -87656262 + Tigger5 DNA MER2_type 2310 2391 -15 2 845 576 289 0 11 chr11 34187647 34187797 -87656059 - ID_B1 SINE B4 0 224 81 2 845 236 297 0 0 chr11 34187806 34187870 -87655986 + MER33 DNA MER1_type 256 319 -5 2 845 970 301 99 24 chr11 34188124 34188540 -87655316 - MLT1D LTR MaLR -9 496 50 3 845 920 107 26 45 chr11 34188769 34188925 -87654931 + B2_Mm2 SINE B2 2 154 -41 3 845 291 114 0 0 chr11 34190256 34190300 -87653556 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 3 845 296 226 116 23 chr11 34191158 34191244 -87652612 + MIR SINE MIR 60 153 -55 3 845 295 148 0 18 chr11 34191424 34191479 -87652377 + MIR3 SINE MIR 149 202 -6 3 845 278 374 37 49 chr11 34191788 34191951 -87651905 + Charlie8 DNA MER1_type 57 217 -2211 3 845 294 50 0 0 chr11 34192014 34192054 -87651802 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 845 354 333 0 122 chr11 34192074 34192221 -87651635 + ORR1E LTR MaLR 1 129 -230 3 845 244 215 110 70 chr11 34192338 34192438 -87651418 + ORR1E LTR MaLR 276 379 0 3 845 191 284 225 11 chr11 34194981 34195070 -87648786 - MIR SINE MIR -85 123 16 3 845 393 196 165 0 chr11 34195605 34195702 -87648154 + Lx4B LINE L1 6939 7051 -7 3 845 243 0 0 0 chr11 34195730 34195757 -87648099 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 845 198 91 0 0 chr11 34196031 34196064 -87647792 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 3 845 260 294 34 23 chr11 34196111 34196222 -87647634 + MIRc SINE MIR 39 154 -114 3 845 182 369 61 15 chr11 34196420 34196552 -87647304 + L2b LINE L2 3233 3370 -5 3 845 688 263 47 0 chr11 34196614 34196785 -87647071 + B3A SINE B2 4 182 -16 3 845 193 250 91 93 chr11 34196828 34196981 -87646875 - MIRc SINE MIR -83 185 37 3 845 269 226 0 0 chr11 34196992 34197054 -87646802 - L1MA6 LINE L1 -10 6290 6229 3 845 1107 304 80 22 chr11 34197131 34197592 -87646264 - L1MA6 LINE L1 -186 6114 5627 3 845 309 261 0 0 chr11 34198250 34198365 -87645491 + (CACCAT)n Simple_repeat Simple_repeat 5 119 0 3 845 401 333 39 28 chr11 34198383 34198562 -87645294 - MIR SINE MIR -10 252 72 3 845 388 328 27 27 chr11 34200980 34201250 -87642606 - L1MC4a LINE L1 -249 5924 5656 3 845 248 250 17 0 chr11 34201718 34201778 -87642078 + RMER30 DNA MER1_type 133 193 -9 3 845 443 319 36 0 chr11 34202196 34202362 -87641494 + L2 LINE L2 2567 2738 -681 3 845 226 329 82 87 chr11 34202576 34202759 -87641097 - LTR16E2 LTR ERVL -122 446 265 3 845 270 337 12 12 chr11 34203114 34203198 -87640658 + MIRc SINE MIR 51 134 -134 3 845 398 173 12 47 chr11 34204064 34204234 -87639622 + (TA)n Simple_repeat Simple_repeat 2 165 0 3 845 562 284 27 34 chr11 34204973 34205119 -87638737 + RSINE1 SINE B4 7 151 -14 3 845 629 278 36 54 chr11 34205136 34205360 -87638496 - MIR SINE MIR -1 261 42 3 845 717 168 153 7 chr11 34205372 34205516 -87638340 - URR1A DNA MER1_type -1 225 61 3 845 339 376 38 0 chr11 34206509 34206642 -87637214 + MIR SINE MIR 120 257 -5 3 845 191 261 27 107 chr11 34206600 34206750 -87637106 - L2a LINE L2 -38 3388 3251 3 845 517 257 0 34 chr11 34207025 34207142 -87636714 + ID_B1 SINE B4 86 198 -26 3 845 901 304 53 75 chr11 34207274 34207690 -87636166 + MTE2a LTR MaLR 13 419 0 3 845 596 352 48 48 chr11 34207820 34208115 -87635741 + MLT1K LTR MaLR 11 305 -290 3 845 787 237 86 0 chr11 34208173 34208371 -87635485 + B3 SINE B2 2 216 0 3 845 389 269 117 22 chr11 34208415 34208552 -87635304 + MLT1K LTR MaLR 369 518 -77 3 845 415 301 30 18 chr11 34208738 34208907 -87634949 - MER45A DNA Tip100 -3 175 5 3 846 272 325 12 0 chr11 34211200 34211280 -87632576 - Charlie15a DNA MER1_type -36 188 108 3 846 382 188 24 38 chr11 34211281 34211662 -87632194 + (TG)n Simple_repeat Simple_repeat 1 375 0 3 846 310 339 111 61 chr11 34212004 34212202 -87631654 - MIRb SINE MIR -35 233 26 3 846 270 235 44 0 chr11 34212738 34212806 -87631050 - MIRm SINE MIR -2 274 204 3 846 343 65 0 62 chr11 34213721 34213786 -87630070 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 3 846 405 0 0 0 chr11 34213789 34213834 -87630022 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 846 527 0 16 0 chr11 34214578 34214641 -87629215 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 846 258 81 0 0 chr11 34214968 34215005 -87628851 + (T)n Simple_repeat Simple_repeat 1 37 0 3 846 349 66 0 32 chr11 34216849 34216912 -87626944 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 846 193 291 156 71 chr11 34217680 34217891 -87625965 + MIR SINE MIR 34 262 0 3 846 504 68 0 0 chr11 34218798 34218871 -87624985 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 846 366 23 0 0 chr11 34218884 34218927 -87624929 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 3 846 200 347 44 4 chr11 34218984 34219105 -87624751 - MIR SINE MIR -125 151 27 3 846 230 342 54 9 chr11 34219136 34219248 -87624608 + L2a LINE L2 3309 3425 -1 3 846 256 241 0 0 chr11 34219471 34219525 -87624331 - L2a LINE L2 -25 3401 3348 3 846 227 356 52 31 chr11 34219782 34220011 -87623845 - L2 LINE L2 -351 3068 2835 3 846 1119 251 88 9 chr11 34221257 34221586 -87622270 + MTD LTR MaLR 65 419 0 3 846 197 271 114 0 chr11 34221605 34221675 -87622181 - MIR SINE MIR -99 163 86 3 846 621 310 5 21 chr11 34223132 34223320 -87620536 + MER117 DNA MER1_type 11 195 -2 3 846 183 321 0 0 chr11 34225079 34225160 -87618696 + G-rich Low_complexity Low_complexity 3 83 0 3 846 269 375 43 12 chr11 34225211 34225373 -87618483 + Charlie8 DNA MER1_type 18 184 -2244 3 846 266 312 0 49 chr11 34225472 34225553 -87618303 + MER81 DNA AcHobo 38 114 0 3 846 236 342 8 34 chr11 34226392 34226510 -87617346 + MIR3 SINE MIR 15 129 -79 3 846 603 268 34 22 chr11 34226702 34226899 -87616957 + MTD LTR MaLR 1 199 -222 3 846 205 253 181 0 chr11 34227016 34227099 -87616757 + MIRb SINE MIR 42 139 -129 3 846 287 267 57 57 chr11 34227191 34227314 -87616542 + MER5A1 DNA MER1_type 11 133 -33 3 846 297 387 52 6 chr11 34228493 34228667 -87615189 + MER5A DNA MER1_type 1 182 -7 3 846 363 189 0 98 chr11 34228772 34228854 -87615002 + B1F SINE Alu 18 91 -58 3 846 198 0 0 0 chr11 34228861 34228883 -87614973 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 846 323 214 35 12 chr11 34229123 34229208 -87614648 - MER5A1 DNA MER1_type -52 114 28 3 846 289 343 55 50 chr11 34229440 34229658 -87614198 + MamGypLTR1b LTR Gypsy 564 782 0 3 846 600 84 0 0 chr11 34229825 34229908 -87613948 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 3 846 213 312 42 21 chr11 34230076 34230171 -87613685 + L2b LINE L2 2384 2480 -939 3 846 207 375 12 0 chr11 34230689 34230769 -87613087 + L2b LINE L2 3290 3370 -5 3 846 221 296 0 0 chr11 34230883 34230954 -87612902 + (CAATT)n Simple_repeat Simple_repeat 1 71 0 3 846 341 241 89 0 chr11 34232117 34232196 -87611660 - B1F SINE Alu -41 108 23 3 846 543 114 0 23 chr11 34232323 34232414 -87611442 + B1_Mm SINE Alu 24 137 -10 3 846 222 0 25 50 chr11 34232414 34232454 -87611402 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 846 342 0 0 0 chr11 34232486 34232524 -87611332 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 846 594 63 0 0 chr11 34234007 34234086 -87609770 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 846 309 238 135 29 chr11 34234210 34234314 -87609542 + MIRc SINE MIR 88 202 -66 3 846 415 321 93 0 chr11 34234354 34234516 -87609340 - MIRb SINE MIR -20 248 72 3 846 190 333 36 0 chr11 34235738 34235822 -87608034 + L3b LINE CR1 26 112 -370 3 846 264 350 10 0 chr11 34235858 34235958 -87607898 + CT-rich Low_complexity Low_complexity 5 105 0 3 846 488 16 16 0 chr11 34235963 34236024 -87607832 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 846 255 31 0 0 chr11 34236024 34236055 -87607801 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 846 337 310 49 88 chr11 34236111 34236343 -87607513 - B4A SINE B4 -59 233 15 3 846 516 111 0 0 chr11 34237315 34237396 -87606460 + (CATA)n Simple_repeat Simple_repeat 2 82 0 3 846 1401 233 61 12 chr11 34237621 34238014 -87605842 + ORSL-2b DNA Tip100 72 484 -24 3 846 482 220 156 67 chr11 34238014 34238194 -87605662 + B3A SINE B2 3 198 0 3 846 1401 233 61 12 chr11 34238194 34238209 -87605647 + ORSL-2b DNA Tip100 485 499 -9 3 846 192 318 0 15 chr11 34238239 34238306 -87605550 - MIR SINE MIR -6 256 191 3 846 264 250 0 0 chr11 34238556 34238608 -87605248 + MER2B DNA MER2_type 251 302 -34 3 846 191 293 86 40 chr11 34240141 34240263 -87603593 + MIRm SINE MIR 25 163 -113 3 846 1108 170 97 5 chr11 34240541 34240748 -87603108 - URR1A DNA MER1_type 0 226 1 3 846 224 262 0 0 chr11 34240874 34240916 -87602940 + MIRc SINE MIR 46 87 -181 3 846 745 270 62 21 chr11 34241750 34241992 -87601864 - MIR SINE MIR -1 261 10 3 846 459 241 88 12 chr11 34242366 34242526 -87601330 + L5 LINE RTE 2092 2263 -2 3 846 844 343 10 3 chr11 34242737 34243027 -87600829 + B4A SINE B4 1 292 0 3 846 630 95 0 0 chr11 34243087 34243182 -87600674 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 846 332 138 0 15 chr11 34243489 34243555 -87600301 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 846 214 213 21 0 chr11 34243558 34243605 -87600251 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 3 846 253 333 45 58 chr11 34243648 34243804 -87600052 + L2a LINE L2 3219 3372 -54 3 846 180 0 0 0 chr11 34244023 34244043 -87599813 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 3 846 305 234 194 45 chr11 34244356 34244490 -87599366 + MIRb SINE MIR 84 237 -31 3 846 261 386 8 0 chr11 34244616 34244743 -87599113 + MIR SINE MIR 1 128 -134 3 846 369 0 0 0 chr11 34245244 34245285 -87598571 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 3 846 232 343 37 56 chr11 34245588 34245696 -87598160 - MamGypLTR3 LTR Gypsy -106 733 628 3 846 257 316 38 0 chr11 34246055 34246159 -87597697 + MIRc SINE MIR 57 170 -98 4 846 1003 292 40 14 chr11 34246164 34246442 -87597414 + B4A SINE B4 6 290 -2 4 846 236 280 155 70 chr11 34247239 34247381 -87596475 - MIRb SINE MIR -113 155 2 4 846 197 211 0 17 chr11 34247431 34247489 -87596367 + CT-rich Low_complexity Low_complexity 5 61 0 4 846 1182 27 0 0 chr11 34248097 34248243 -87595613 + (TG)n Simple_repeat Simple_repeat 1 146 0 4 846 316 381 58 0 chr11 34248525 34248698 -87595158 - MER102b DNA MER1_type -158 183 1 4 846 378 0 0 0 chr11 34250630 34250672 -87593184 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 846 270 337 36 0 chr11 34250799 34250882 -87592974 - MER20 DNA MER1_type -133 86 1 4 846 323 60 0 20 chr11 34250949 34251000 -87592856 + (TCC)n Simple_repeat Simple_repeat 3 52 0 4 846 243 375 73 30 chr11 34251144 34251309 -87592547 + MIR SINE MIR 62 233 -29 4 846 190 200 280 0 chr11 34251851 34251901 -87591955 + MIR SINE MIR 160 223 -39 4 846 389 319 63 51 chr11 34252107 34252282 -87591574 - MER58A DNA MER1_type -1 223 47 4 846 402 232 54 14 chr11 34254604 34254718 -87589138 + PB1D7 SINE Alu 16 127 -22 4 846 198 0 0 0 chr11 34255112 34255134 -87588722 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 4 846 297 0 0 0 chr11 34256642 34256675 -87587181 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 846 348 344 136 35 chr11 34257293 34257492 -87586364 + L2a LINE L2 3189 3407 -19 4 846 351 0 0 0 chr11 34257589 34257628 -87586228 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 846 369 0 0 0 chr11 34257628 34257668 -87586188 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 846 266 245 59 68 chr11 34258908 34259026 -87584830 - MER3 DNA MER1_type -18 191 75 4 846 1387 240 138 25 chr11 34260904 34261276 -87582580 + MTD LTR MaLR 6 419 0 4 846 516 284 118 0 chr11 34261313 34261482 -87582374 + MER5A DNA MER1_type 1 189 0 4 846 433 53 26 26 chr11 34262837 34262914 -87580942 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 4 846 249 33 0 0 chr11 34263388 34263418 -87580438 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 846 357 44 0 0 chr11 34263418 34263463 -87580393 - B1_Mur4 SINE Alu -9 141 97 4 846 522 75 0 0 chr11 34265336 34265416 -87578440 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 846 198 0 0 0 chr11 34265416 34265438 -87578418 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 846 333 0 0 0 chr11 34265438 34265474 -87578382 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 846 270 233 0 0 chr11 34265656 34265742 -87578114 + GA-rich Low_complexity Low_complexity 1 86 0 4 846 302 270 52 60 chr11 34265744 34265878 -87577978 + HAL1-3A_ME LINE L1 2284 2416 -442 4 846 359 329 55 0 chr11 34265878 34265993 -87577863 + MIRc SINE MIR 52 177 -99 4 846 1489 226 34 75 chr11 34266943 34267216 -87576640 - MTE2b LTR MaLR 0 379 109 4 846 1914 175 76 8 chr11 34267216 34267585 -87576271 + ORR1B1 LTR MaLR 1 394 0 4 846 1489 226 34 75 chr11 34267585 34267698 -87576158 - MTE2b LTR MaLR -271 108 9 4 846 383 0 21 0 chr11 34267703 34267750 -87576106 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 846 268 232 0 0 chr11 34267828 34267884 -87575972 + B3A SINE B2 1 56 -142 4 846 189 205 26 0 chr11 34268745 34268784 -87575072 + MIR SINE MIR 29 68 -194 4 846 225 108 0 0 chr11 34270299 34270336 -87573520 + (A)n Simple_repeat Simple_repeat 1 37 0 4 846 285 109 0 0 chr11 34271216 34271262 -87572594 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 4 846 450 233 158 0 chr11 34271312 34271432 -87572424 - RSINE1 SINE B4 -24 141 3 4 846 296 328 35 28 chr11 34271585 34271726 -87572130 + MIR SINE MIR 12 153 -109 4 846 3467 28 5 0 chr11 34271733 34272127 -87571729 - MTA_Mm LTR MaLR 0 396 1 4 846 447 274 215 26 chr11 34272286 34272481 -87571375 - MIR SINE MIR -28 234 3 4 846 195 286 33 77 chr11 34273298 34273389 -87570467 + MIR3 SINE MIR 77 163 -45 4 846 576 257 80 48 chr11 34273457 34273645 -87570211 - B3A SINE B2 0 198 5 4 846 207 0 0 0 chr11 34275486 34275509 -87568347 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 846 348 24 0 0 chr11 34275672 34275713 -87568143 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 846 234 0 0 0 chr11 34276747 34276773 -87567083 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 846 197 228 89 0 chr11 34278232 34278277 -87565579 + MIRb SINE MIR 35 83 -185 4 846 438 296 15 22 chr11 34278579 34278714 -87565142 + MER3 DNA MER1_type 49 182 -27 4 846 262 286 43 21 chr11 34278895 34278988 -87564868 + MIR3 SINE MIR 66 160 -48 4 846 320 348 40 75 chr11 34279834 34280033 -87563823 - MER20 DNA MER1_type -24 195 4 4 846 719 293 35 18 chr11 34280034 34280263 -87563593 + MIRb SINE MIR 35 267 -1 4 846 188 318 69 52 chr11 34280521 34280637 -87563219 - L4 LINE RTE -100 1929 1812 4 846 1031 292 16 73 chr11 34281168 34281549 -87562307 - ORR1E LTR MaLR 0 359 1 4 846 251 361 125 57 chr11 34281847 34282023 -87561833 + Charlie8 DNA MER1_type 1 188 -2240 4 846 576 324 16 27 chr11 34282105 34282289 -87561567 - MIRb SINE MIR -64 204 23 4 846 272 311 0 0 chr11 34282726 34282903 -87560953 + (CAAA)n Simple_repeat Simple_repeat 1 177 0 4 846 350 224 8 31 chr11 34283088 34283217 -87560639 + (CATA)n Simple_repeat Simple_repeat 2 127 0 4 846 190 288 102 0 chr11 34283222 34283281 -87560575 + L2a LINE L2 3018 3082 -344 4 846 507 260 0 0 chr11 34284533 34284633 -87559223 - RSINE1 SINE B4 -62 103 4 4 846 346 279 94 88 chr11 34284637 34284818 -87559038 + L2 LINE L2 2634 2815 -604 4 846 180 0 0 0 chr11 34284899 34284919 -87558937 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 4 846 516 311 90 0 chr11 34287282 34287449 -87556407 + MER58A DNA MER1_type 42 223 -1 4 846 345 344 55 35 chr11 34287471 34287513 -87556343 - MIRb SINE MIR -45 223 176 4 846 480 18 0 0 chr11 34287513 34287570 -87556286 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 846 345 344 55 35 chr11 34287570 34287729 -87556127 - MIRb SINE MIR -93 175 18 4 846 355 189 40 0 chr11 34290515 34290589 -87553267 - RMER12 LTR ERVK -155 1417 1341 4 846 189 0 0 0 chr11 34290601 34290622 -87553234 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 4 846 387 295 66 43 chr11 34290622 34290790 -87553066 - RMER12 LTR ERVK -194 1378 1281 4 846 468 0 0 0 chr11 34290790 34290842 -87553014 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 846 4951 143 57 19 chr11 34290842 34291698 -87552158 - RMER12 LTR ERVK -292 1280 1 4 846 767 11 11 0 chr11 34291750 34291842 -87552014 + (GGAA)n Simple_repeat Simple_repeat 1 93 0 4 846 204 310 34 11 chr11 34293600 34293688 -87550168 + GA-rich Low_complexity Low_complexity 4 93 0 4 846 215 211 0 0 chr11 34294298 34294336 -87549520 + MIR SINE MIR 112 149 -59 4 846 256 374 99 11 chr11 34294354 34294535 -87549321 + Charlie15a DNA MER1_type 28 224 0 4 846 265 345 123 27 chr11 34295594 34295740 -87548116 - L2b LINE L2 -13 3362 3203 4 846 748 242 41 26 chr11 34296666 34296861 -87546995 + B3A SINE B2 1 198 0 4 846 313 211 100 55 chr11 34297416 34297526 -87546330 + HAL1b LINE L1 1895 2009 0 4 846 461 383 35 16 chr11 34297666 34297923 -87545933 + MIRb SINE MIR 1 262 -6 4 846 214 179 200 43 chr11 34299550 34299620 -87544236 + MIRb SINE MIR 121 201 -67 4 846 690 294 52 8 chr11 34299634 34299884 -87543972 + MIR SINE MIR 1 261 -1 4 846 215 238 125 16 chr11 34299887 34299951 -87543905 + MIRb SINE MIR 198 268 0 4 846 543 277 112 33 chr11 34300368 34300676 -87543180 - L1MD1 LINE L1 -194 6048 5710 4 846 306 0 0 0 chr11 34300676 34300710 -87543146 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 846 286 300 63 25 chr11 34300710 34300747 -87543109 - L1MD1 LINE L1 -735 5709 5670 4 846 214 231 0 13 chr11 34304909 34304959 -87538897 + MIR SINE MIR 114 165 -103 4 846 347 257 75 19 chr11 34305834 34305941 -87537915 + MIR3 SINE MIR 90 202 -6 4 846 204 40 0 0 chr11 34306792 34306817 -87537039 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 846 297 0 0 0 chr11 34306833 34306866 -87536990 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 846 941 294 31 49 chr11 34307184 34307574 -87536282 + MER113 DNA MER1_type 77 459 -62 4 846 381 253 0 0 chr11 34307611 34307690 -87536166 + B1F2 SINE Alu 6 84 -65 4 846 22 0 0 0 chr11 34307906 34307928 -87535928 + AT_rich Low_complexity Low_complexity 1 22 0 4 846 198 0 0 0 chr11 34308276 34308298 -87535558 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 846 573 80 0 0 chr11 34308298 34308386 -87535470 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 846 459 0 0 0 chr11 34308386 34308437 -87535419 + (CAGG)n Simple_repeat Simple_repeat 1 51 0 4 846 232 258 135 0 chr11 34309432 34309521 -87534335 - Tigger14a DNA MER2_type -93 231 131 4 846 335 301 11 0 chr11 34309740 34309833 -87534023 + MLT1D LTR MaLR 30 123 -382 4 846 190 234 149 45 chr11 34310309 34310376 -87533480 - MIR SINE MIR -72 190 117 4 846 393 272 96 16 chr11 34312523 34312737 -87531119 - MIRb SINE MIR 0 262 32 4 846 986 306 47 44 chr11 34313997 34314359 -87529497 + MLT1A0 LTR MaLR 1 363 -2 4 846 711 250 36 82 chr11 34314732 34314928 -87528928 - B3A SINE B2 -3 195 9 4 846 519 17 0 0 chr11 34315002 34315062 -87528794 + (TTCTC)n Simple_repeat Simple_repeat 5 64 0 4 846 1431 50 0 0 chr11 34315062 34315241 -87528615 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 846 280 159 0 55 chr11 34315241 34315314 -87528542 + CT-rich Low_complexity Low_complexity 3 71 0 4 846 1172 62 7 0 chr11 34315343 34315489 -87528367 - B1_Mm SINE Alu 0 147 1 4 846 414 224 0 0 chr11 34317180 34317296 -87526560 + (TGGG)n Simple_repeat Simple_repeat 1 116 0 4 846 277 311 0 0 chr11 34317873 34317934 -87525922 + L2a LINE L2 3359 3419 -7 5 846 335 282 37 20 chr11 34319179 34319331 -87524525 - MIRb SINE MIR -7 261 102 5 846 385 262 134 24 chr11 34322988 34323152 -87520704 - MER113 DNA MER1_type -226 295 114 5 846 216 355 117 9 chr11 34325756 34325867 -87517989 - L2b LINE L2 -6 3369 3247 5 846 353 289 0 30 chr11 34326389 34326489 -87517367 + PB1D10 SINE Alu 21 117 0 5 846 182 340 40 20 chr11 34326576 34326675 -87517181 - MIRb SINE MIR -71 197 97 5 846 261 0 0 0 chr11 34328149 34328178 -87515678 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 846 406 273 140 0 chr11 34328179 34328322 -87515534 + RSINE1 SINE B4 3 165 0 5 846 510 125 0 0 chr11 34328345 34328425 -87515431 + (GGA)n Simple_repeat Simple_repeat 3 82 0 5 846 423 106 0 0 chr11 34328425 34328491 -87515365 + (CAA)n Simple_repeat Simple_repeat 2 67 0 5 846 570 15 0 0 chr11 34328936 34329003 -87514853 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 846 297 128 0 0 chr11 34329915 34329962 -87513894 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 846 228 135 0 0 chr11 34330212 34330249 -87513607 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 846 309 330 25 42 chr11 34330897 34331017 -87512839 + MIR SINE MIR 8 125 -137 5 846 368 296 37 9 chr11 34332145 34332254 -87511602 - MER117 DNA MER1_type -50 147 36 5 846 237 301 71 51 chr11 34332728 34332826 -87511030 - L3 LINE CR1 -3530 959 860 5 846 188 339 149 0 chr11 34333383 34333504 -87510352 - L2a LINE L2 -2 3424 3286 5 846 905 301 126 5 chr11 34333852 34334289 -87509567 + L1MB8 LINE L1 5522 6011 -167 5 846 1202 45 17 17 chr11 34335321 34335500 -87508356 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 5 846 429 36 0 0 chr11 34336045 34336100 -87507756 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 846 1488 240 47 38 chr11 34336180 34336604 -87507252 + Lx7 LINE L1 6873 7300 -396 5 846 425 133 13 0 chr11 34336740 34336815 -87507041 + (TTCA)n Simple_repeat Simple_repeat 1 76 0 5 846 189 0 0 0 chr11 34337285 34337306 -87506550 + (T)n Simple_repeat Simple_repeat 1 21 0 5 846 327 239 65 11 chr11 34337439 34337532 -87506324 - RMER10A LTR ERVL -27 415 318 5 846 271 340 59 22 chr11 34338691 34338896 -87504960 - MIR SINE MIR -23 245 17 5 846 204 310 65 65 chr11 34339365 34339489 -87504367 + MIRm SINE MIR 45 168 -108 5 105 809 245 10 25 chr11 34340815 34341012 -87502844 - B3A SINE B2 0 198 5 5 847 21 0 0 0 chr11 34341200 34341221 -87502635 + AT_rich Low_complexity Low_complexity 1 21 0 5 847 541 240 59 174 chr11 34341422 34341881 -87501975 - RMER10A LTR ERVL -25 417 12 5 847 312 234 16 16 chr11 34342090 34342216 -87501640 + (TATG)n Simple_repeat Simple_repeat 2 127 0 5 847 549 68 0 0 chr11 34342424 34342498 -87501358 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 5 847 324 0 0 0 chr11 34342505 34342541 -87501315 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 847 303 180 20 20 chr11 34342564 34342666 -87501190 + GA-rich Low_complexity Low_complexity 2 103 0 5 847 190 103 0 0 chr11 34343605 34343634 -87500222 + MIR SINE MIR 110 138 -70 5 847 955 0 17 0 chr11 34344316 34344431 -87499425 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 5 847 270 0 0 0 chr11 34345056 34345086 -87498770 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 5 847 208 67 89 0 chr11 34345137 34345182 -87498674 + A-rich Low_complexity Low_complexity 2 50 0 5 847 244 277 124 9 chr11 34345583 34345696 -87498160 - MIRc SINE MIR -121 147 22 5 847 684 218 8 0 chr11 34345792 34345925 -87497931 + B1_Mur2 SINE Alu 1 134 -15 5 847 720 43 0 0 chr11 34345930 34346022 -87497834 + (GGA)n Simple_repeat Simple_repeat 3 94 0 5 847 252 278 71 66 chr11 34346212 34346424 -87497432 - ORSL-2a DNA Tip100 -31 311 99 5 847 341 340 71 52 chr11 34346555 34346865 -87496991 + Charlie19a DNA Charlie 56 371 -15 5 847 194 30 0 83 chr11 34348405 34348441 -87495415 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 5 847 300 303 15 29 chr11 34348555 34348691 -87495165 - Lx7 LINE L1 0 7696 7563 5 847 252 179 0 0 chr11 34348809 34348848 -87495008 + Lx7 LINE L1 7076 7114 -582 5 847 662 223 126 19 chr11 34350863 34351069 -87492787 - Lx9 LINE L1 -56 7588 7361 5 847 217 378 83 8 chr11 34351285 34351405 -87492451 - L2b LINE L2 -14 3361 3233 5 847 192 362 0 0 chr11 34352159 34352228 -87491628 + L2b LINE L2 3300 3368 -7 5 847 468 48 0 0 chr11 34352778 34352841 -87491015 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 5 847 363 23 0 0 chr11 34352844 34352888 -87490968 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 847 435 38 0 0 chr11 34353158 34353211 -87490645 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 847 437 240 10 0 chr11 34353755 34353851 -87490005 - PB1D10 SINE Alu -3 114 18 5 847 301 278 159 12 chr11 34354806 34355064 -87488792 - L1MC4a LINE L1 -191 7691 7396 5 847 1037 149 108 61 chr11 34355092 34355306 -87488550 - URR1A DNA MER1_type -2 224 1 5 847 920 288 116 15 chr11 34355323 34355721 -87488135 + MER21B LTR ERV1 376 813 -50 5 847 360 309 36 0 chr11 34355800 34355910 -87487946 + Lx6 LINE L1 6774 6887 -573 5 847 1920 227 56 7 chr11 34355940 34356353 -87487503 + Lx6 LINE L1 7013 7445 -15 5 847 203 79 26 0 chr11 34356890 34356928 -87486928 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 847 690 309 38 4 chr11 34357083 34357349 -87486507 - MER63D DNA AcHobo -783 278 4 5 847 271 45 0 43 chr11 34358651 34358698 -87485158 + (CAA)n Simple_repeat Simple_repeat 2 46 0 5 847 195 69 0 0 chr11 34359011 34359040 -87484816 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 847 657 86 0 0 chr11 34359139 34359232 -87484624 + (GGGA)n Simple_repeat Simple_repeat 1 93 0 5 847 370 276 0 10 chr11 34360127 34360226 -87483630 - PB1D7 SINE Alu -10 110 13 5 847 22 0 0 0 chr11 34361348 34361370 -87482486 + AT_rich Low_complexity Low_complexity 1 22 0 5 847 691 22 0 11 chr11 34361423 34361515 -87482341 - L1Md_T LINE L1 0 6582 6492 5 847 462 241 2 32 chr11 34361610 34361769 -87482087 - L1MA4A LINE L1 -379 5921 5772 5 847 992 132 6 6 chr11 34361961 34362129 -87481727 + URR1A DNA MER1_type 59 226 0 5 847 276 91 0 0 chr11 34363716 34363760 -87480096 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 5 847 579 116 18 9 chr11 34365012 34365125 -87478731 + (CATA)n Simple_repeat Simple_repeat 3 116 0 5 847 308 250 12 24 chr11 34367501 34367583 -87476273 + ID4_ SINE ID 3 83 0 5 847 1207 171 13 18 chr11 34371643 34371869 -87471987 - URR1B DNA MER1_type 0 225 1 5 847 944 33 0 0 chr11 34371871 34371991 -87471865 + B1_Mm SINE Alu 1 120 -27 5 847 252 253 38 54 chr11 34372605 34372735 -87471121 - MIRc SINE MIR -99 177 32 5 847 423 0 0 0 chr11 34374597 34374644 -87469212 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 847 189 233 80 27 chr11 34376015 34376090 -87467766 - L4 LINE RTE -280 1749 1671 5 847 4640 149 80 38 chr11 34376132 34376998 -87466858 + RMER19B LTR ERVK 1 902 0 5 847 408 288 21 7 chr11 34377647 34377787 -87466069 + GA-rich Low_complexity Low_complexity 1 142 0 5 847 215 324 0 0 chr11 34378233 34378304 -87465552 + MIR SINE MIR 71 141 -121 5 847 249 57 0 0 chr11 34379112 34379147 -87464709 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 5 847 25 31 0 0 chr11 34380970 34381002 -87462854 + AT_rich Low_complexity Low_complexity 1 32 0 5 847 192 274 0 0 chr11 34381410 34381461 -87462395 + MIR SINE MIR 48 98 -110 5 847 222 37 0 0 chr11 34382088 34382115 -87461741 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 847 437 138 0 11 chr11 34385117 34385212 -87458644 + (GA)n Simple_repeat Simple_repeat 1 94 0 5 847 243 261 10 61 chr11 34385486 34385584 -87458272 - L1MC2 LINE L1 -25 6319 6227 5 847 761 221 15 0 chr11 34385598 34385729 -87458127 + ETnERV2-int LTR ERVK 7070 7202 -204 5 847 214 255 0 0 chr11 34386354 34386401 -87457455 + CT-rich Low_complexity Low_complexity 1 47 0 5 847 180 246 41 55 chr11 34386560 34386633 -87457223 - L3 LINE CR1 -268 4221 4150 5 847 231 36 0 0 chr11 34387809 34387837 -87456019 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 847 271 313 104 20 chr11 34389249 34389451 -87454405 + MIRb SINE MIR 41 259 -9 5 847 21 36 0 0 chr11 34389500 34389528 -87454328 + AT_rich Low_complexity Low_complexity 1 28 0 5 847 206 258 76 61 chr11 34390605 34390671 -87453185 + MIR SINE MIR 183 249 -13 5 847 246 304 26 0 chr11 34391153 34391268 -87452588 + L1M5 LINE L1 4993 5110 -1036 5 847 962 293 92 12 chr11 34391427 34391752 -87452104 + ORR1E LTR MaLR 9 359 0 5 847 250 325 103 47 chr11 34391756 34392143 -87451713 + L1M5 LINE L1 5301 5709 -531 5 847 2284 122 33 138 chr11 34392515 34393036 -87450820 - RMER4A LTR ERVK 0 466 1 5 847 681 13 0 0 chr11 34393466 34393544 -87450312 + (CACAT)n Simple_repeat Simple_repeat 5 82 0 5 847 234 213 26 26 chr11 34393753 34393830 -87450026 + T-rich Low_complexity Low_complexity 1 77 0 5 847 3097 171 74 9 chr11 34394877 34395527 -87448329 + RLTR17 LTR ERVK 1 692 0 5 847 297 0 0 0 chr11 34395673 34395706 -87448150 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 847 520 309 39 22 chr11 34396484 34396666 -87447190 - B3A SINE B2 -10 188 4 5 847 227 311 54 45 chr11 34396834 34396945 -87446911 - MIRc SINE MIR -132 136 25 5 847 675 87 0 0 chr11 34397031 34397135 -87446721 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 847 390 242 0 59 chr11 34398509 34398639 -87445217 - MIR SINE MIR -96 166 52 6 847 326 212 50 0 chr11 34400715 34400795 -87443061 + MER5A DNA MER1_type 92 175 -14 6 847 195 251 52 24 chr11 34401745 34401838 -87442018 - MIR SINE MIR -133 135 40 6 847 1362 66 5 27 chr11 34401909 34402095 -87441761 + B2_Mm2 SINE B2 3 184 -11 6 847 242 148 19 0 chr11 34402617 34402671 -87441185 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 847 365 308 9 27 chr11 34403554 34403664 -87440192 + B4A SINE B4 1 108 -184 6 847 853 270 193 15 chr11 34403721 34404063 -87439793 - MTD LTR MaLR -16 403 1 6 847 477 0 0 0 chr11 34404144 34404197 -87439659 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 847 486 49 0 0 chr11 34404313 34404374 -87439482 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 847 452 260 9 9 chr11 34404817 34404922 -87438934 + RSINE1 SINE B4 37 141 -24 6 847 504 0 0 0 chr11 34404924 34404980 -87438876 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 847 443 136 0 24 chr11 34407758 34407841 -87436015 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 6 847 186 43 0 0 chr11 34407843 34407866 -87435990 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 847 356 295 106 34 chr11 34407943 34408150 -87435706 - MIRb SINE MIR -38 230 9 6 847 1316 174 9 0 chr11 34408508 34408727 -87435129 + URR1B DNA MER1_type 5 225 0 6 847 232 304 0 0 chr11 34409376 34409445 -87434411 + ID2 SINE ID 3 71 -12 6 847 885 173 164 21 chr11 34409835 34410024 -87433832 - B3 SINE B2 0 216 1 6 847 247 381 7 35 chr11 34410341 34410485 -87433371 + MIRb SINE MIR 99 238 -30 6 847 325 222 90 10 chr11 34411471 34411571 -87432285 - MTD LTR MaLR -311 108 1 6 847 226 261 31 0 chr11 34412429 34412494 -87431362 + CT-rich Low_complexity Low_complexity 4 70 0 6 847 379 52 35 0 chr11 34412599 34412657 -87431199 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 6 847 240 35 0 0 chr11 34413249 34413278 -87430578 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 6 847 351 0 0 0 chr11 34413731 34413770 -87430086 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 847 37 52 0 0 chr11 34413792 34413850 -87430006 + AT_rich Low_complexity Low_complexity 1 58 0 6 847 21 0 0 0 chr11 34414273 34414294 -87429562 + GC_rich Low_complexity Low_complexity 1 21 0 6 847 869 33 124 0 chr11 34414741 34414862 -87428994 + L1Md_F2 LINE L1 6444 6579 -3 6 847 25 0 0 0 chr11 34414862 34414887 -87428969 + AT_rich Low_complexity Low_complexity 1 25 0 6 847 297 0 0 0 chr11 34415725 34415758 -87428098 + (TCTCCC)n Simple_repeat Simple_repeat 4 36 0 6 847 255 158 19 29 chr11 34415823 34415927 -87427929 + (TCTCTG)n Simple_repeat Simple_repeat 4 106 0 6 847 668 133 7 0 chr11 34415995 34416138 -87427718 + (TC)n Simple_repeat Simple_repeat 1 144 0 6 847 246 323 8 15 chr11 34416181 34416313 -87427543 + CT-rich Low_complexity Low_complexity 1 131 0 6 847 935 226 39 0 chr11 34416695 34416903 -87426953 + B3 SINE B2 1 216 0 6 847 1155 75 0 7 chr11 34417778 34417926 -87425930 + B1_Mus1 SINE Alu 2 148 0 6 847 940 167 64 11 chr11 34418035 34418223 -87425633 - B3 SINE B2 -4 212 15 6 847 1428 143 9 4 chr11 34420868 34421093 -87422763 + URR1A DNA MER1_type 1 226 0 6 847 1979 168 64 13 chr11 34422997 34423390 -87420466 - MTC LTR MaLR -8 413 1 6 847 185 306 64 18 chr11 34424548 34424658 -87419198 + L2c LINE L2 3251 3365 -22 6 847 471 294 78 60 chr11 34426354 34426571 -87417285 + Tigger7 DNA MER2_type 2256 2476 -15 6 847 1044 234 5 9 chr11 34426737 34426953 -87416903 + B3 SINE B2 1 215 -1 6 847 210 319 6 35 chr11 34427942 34428114 -87415742 + (CA)n Simple_repeat Simple_repeat 2 168 0 6 847 430 294 7 20 chr11 34428170 34428319 -87415537 + L1_Rod LINE L1 4841 4987 -860 6 847 365 282 25 17 chr11 34428394 34428513 -87415343 + PB1D7 SINE Alu 1 120 0 6 847 1307 109 16 0 chr11 34428567 34428750 -87415106 + B2_Mm2 SINE B2 1 186 -9 6 847 207 69 0 0 chr11 34429190 34429219 -87414637 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 847 618 210 222 0 chr11 34429307 34429483 -87414373 - B3 SINE B2 0 216 2 6 847 459 260 156 28 chr11 34429552 34429912 -87413944 + L1MEe LINE L1 426 831 -4023 6 847 330 26 0 0 chr11 34430429 34430468 -87413388 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 6 847 255 31 0 0 chr11 34431442 34431474 -87412382 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 6 847 483 18 0 0 chr11 34433088 34433144 -87410712 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 847 515 232 99 0 chr11 34433389 34433540 -87410316 + RMER20B LTR ERVK 234 399 -228 6 847 551 314 119 4 chr11 34433698 34433967 -87409889 + MER21B LTR ERV1 65 364 -499 6 847 2795 209 61 44 chr11 34433995 34434766 -87409090 + RLTR40 LTR ERVK 2 785 -32 6 847 760 303 58 36 chr11 34434828 34435157 -87408699 + MER21B LTR ERV1 480 815 -48 6 847 209 244 154 11 chr11 34436037 34436128 -87407728 + MIRb SINE MIR 80 183 -85 6 847 556 239 0 7 chr11 34437675 34437814 -87406042 + L1MA4 LINE L1 5802 5939 -361 6 847 278 50 25 0 chr11 34437816 34437856 -87406000 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 847 2124 181 32 22 chr11 34438034 34438446 -87405410 - MTD LTR MaLR -3 416 1 6 847 275 322 47 0 chr11 34438548 34438719 -87405137 + (CATG)n Simple_repeat Simple_repeat 1 179 0 6 847 397 179 0 0 chr11 34439362 34439429 -87404427 + RLTR44D LTR ERVK 3 69 -417 6 847 4562 54 0 2 chr11 34439429 34439971 -87403885 + RLTR44-int LTR ERVK 2268 2808 -4 6 847 3148 111 32 26 chr11 34439974 34440473 -87403383 + RLTR44C LTR ERVK 1 502 0 6 847 1519 133 8 38 chr11 34440473 34440739 -87403117 + RLTR44-int LTR ERVK 1 258 -2554 6 847 867 188 11 0 chr11 34440744 34440920 -87402936 + RLTR44-int LTR ERVK 71 248 -2564 6 847 7925 7 0 0 chr11 34440920 34441794 -87402062 + L1Md_A LINE L1 4713 5586 -297 6 847 8907 15 0 2 chr11 34441794 34442792 -87401064 + L1Md_A LINE L1 5587 6582 0 6 847 985 204 11 14 chr11 34442822 34443060 -87400796 + RLTR44-int LTR ERVK 51 262 -2550 6 847 1007 207 5 9 chr11 34443105 34443320 -87400536 + RLTR44-int LTR ERVK 47 260 -2552 6 847 679 154 17 0 chr11 34443324 34443441 -87400415 + RLTR44-int LTR ERVK 72 190 -2622 6 847 1173 205 23 0 chr11 34443561 34443862 -87399994 + RLTR44-int LTR ERVK 47 291 -2521 6 847 960 175 14 14 chr11 34443870 34444084 -87399772 + RLTR44-int LTR ERVK 48 261 -2551 6 847 841 231 0 5 chr11 34444085 34444281 -87399575 + RLTR44-int LTR ERVK 47 241 -2571 6 847 1088 161 10 5 chr11 34444302 34444508 -87399348 + RLTR44-int LTR ERVK 52 258 -2554 6 847 1084 185 5 0 chr11 34444489 34444700 -87399156 + RLTR44-int LTR ERVK 47 258 -2554 6 847 1135 171 5 9 chr11 34444710 34444923 -87398933 + RLTR44-int LTR ERVK 52 263 -2549 6 847 982 145 26 10 chr11 34444926 34445121 -87398735 + RLTR44-int LTR ERVK 51 248 -2564 6 848 881 217 14 0 chr11 34495124 34495331 -87348525 + RLTR44-int LTR ERVK 49 258 -2554 6 848 1093 171 14 5 chr11 34495306 34495523 -87348333 + RLTR44-int LTR ERVK 40 258 -2554 6 848 295 170 0 19 chr11 34495523 34495577 -87348279 + RLTR44-int LTR ERVK 90 142 -2670 6 848 939 220 5 9 chr11 34495578 34495794 -87348062 + RLTR44-int LTR ERVK 49 263 -2549 6 848 262 200 0 0 chr11 34495795 34495850 -87348006 + RLTR44-int LTR ERVK 96 150 -2662 6 848 978 201 5 5 chr11 34495850 34496060 -87347796 + RLTR44-int LTR ERVK 54 263 -2549 6 848 725 245 8 5 chr11 34496062 34496303 -87347553 + RLTR44-int LTR ERVK 48 258 -2554 6 848 1113 151 10 5 chr11 34496305 34496511 -87347345 + RLTR44-int LTR ERVK 52 258 -2554 6 848 1147 162 9 0 chr11 34496492 34496702 -87347154 + RLTR44-int LTR ERVK 47 258 -2554 6 848 881 206 0 5 chr11 34496703 34496888 -87346968 + RLTR44-int LTR ERVK 67 250 -2562 6 848 2338 21 3 0 chr11 34496868 34497150 -87346706 + RLTR44-int LTR ERVK 1510 1792 -1020 6 848 1113 216 9 14 chr11 34497158 34497379 -87346477 - MTD LTR MaLR -194 225 6 6 848 182 288 141 23 chr11 34497521 34497649 -87346207 - MIRb SINE MIR -123 145 3 6 848 238 401 79 16 chr11 34498039 34498229 -87345627 + MLT1K LTR MaLR 3 204 -358 6 848 228 286 24 12 chr11 34498999 34499084 -87344772 + GA-rich Low_complexity Low_complexity 1 86 0 6 848 397 320 60 42 chr11 34499706 34499921 -87343935 + MLT1K LTR MaLR 339 557 -38 6 848 244 171 0 0 chr11 34499957 34499998 -87343858 - URR1B DNA MER1_type -19 206 166 6 848 621 211 84 0 chr11 34500008 34500150 -87343706 - URR1B DNA MER1_type -61 164 11 1 848 257 333 0 0 chr11 34500781 34500862 -87342994 - ID4 SINE ID -1 82 2 2 848 314 203 14 0 chr11 34502308 34502382 -87341474 + MER103 DNA DNA 45 119 -47 3 848 396 286 52 17 chr11 34503655 34503829 -87340027 + HAL1-2a_MD LINE L1 2326 2505 -519 4 848 371 121 0 39 chr11 34503836 34503939 -87339917 + (CCA)n Simple_repeat Simple_repeat 3 101 0 5 848 349 317 6 42 chr11 34503940 34504108 -87339748 + HAL1-2a_MD LINE L1 2326 2487 -537 6 848 240 170 19 19 chr11 34504279 34504360 -87339496 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 7 848 288 284 0 12 chr11 34507070 34507152 -87336704 + MTEa LTR MaLR 1 81 -298 8 848 688 207 0 22 chr11 34507180 34507318 -87336538 + B1_Mur1 SINE Alu 9 143 -6 9 848 499 273 139 0 chr11 34507393 34507512 -87336344 + MTEa LTR MaLR 184 311 -68 8 848 591 15 0 0 chr11 34507512 34507580 -87336276 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 1 848 499 273 139 0 chr11 34507580 34507632 -87336224 + MTEa LTR MaLR 312 378 -1 8 848 497 299 97 60 chr11 34508283 34508500 -87335356 + MTD LTR MaLR 133 357 -50 1 848 234 0 0 0 chr11 34509429 34509455 -87334401 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 848 313 216 23 0 chr11 34509455 34509543 -87334313 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 848 1292 236 57 20 chr11 34511307 34511657 -87332199 + MTD LTR MaLR 57 419 0 1 848 1071 214 9 18 chr11 34512915 34513139 -87330717 + URR1A DNA MER1_type 5 226 0 1 848 186 71 0 0 chr11 34513224 34513252 -87330604 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 848 369 188 0 0 chr11 34513431 34513511 -87330345 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 848 1205 142 230 72 chr11 34513980 34514161 -87329695 + ORR1D1 LTR MaLR 1 163 -211 1 848 600 14 0 0 chr11 34514161 34514230 -87329626 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 848 1205 142 230 72 chr11 34514230 34514366 -87329490 + ORR1D1 LTR MaLR 164 367 -7 1 848 206 320 8 47 chr11 34514576 34514704 -87329152 - MIRb SINE MIR -31 237 115 2 848 665 264 91 23 chr11 34515096 34515317 -87328539 + Lx8 LINE L1 7237 7472 -1 2 848 188 405 17 0 chr11 34515852 34515968 -87327888 - MIR SINE MIR -143 119 2 2 848 210 150 0 0 chr11 34517834 34517874 -87325982 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 848 396 103 0 0 chr11 34519454 34519512 -87324344 + (TCC)n Simple_repeat Simple_repeat 1 58 0 2 848 693 260 16 28 chr11 34521360 34521542 -87322314 - B3A SINE B2 -16 182 3 2 848 2519 61 3 12 chr11 34522555 34522889 -87320967 + L1Md_F2 LINE L1 6251 6581 -1 2 848 525 261 196 0 chr11 34523509 34523739 -87320117 + MLT2C2 LTR ERVL 18 292 -172 2 848 459 279 38 38 chr11 34524504 34524690 -87319166 + MLT1B LTR MaLR 10 195 -195 2 848 336 191 0 0 chr11 34524716 34524800 -87319056 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 848 213 94 0 0 chr11 34524827 34524859 -87318997 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 848 219 146 0 0 chr11 34524858 34524899 -87318957 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 848 349 266 0 0 chr11 34524924 34525018 -87318838 + (CA)n Simple_repeat Simple_repeat 1 94 0 3 848 506 192 0 6 chr11 34525036 34525193 -87318663 + (CA)n Simple_repeat Simple_repeat 1 156 0 3 848 387 223 189 13 chr11 34525241 34525400 -87318456 + MLT1B LTR MaLR 203 389 -1 2 848 37 0 0 0 chr11 34526150 34526187 -87317669 + AT_rich Low_complexity Low_complexity 1 37 0 3 848 21 0 0 0 chr11 34526308 34526329 -87317527 + AT_rich Low_complexity Low_complexity 1 21 0 3 848 36 40 0 0 chr11 34526341 34526391 -87317465 + AT_rich Low_complexity Low_complexity 1 50 0 3 848 761 229 10 72 chr11 34528871 34529078 -87314778 + B3A SINE B2 5 198 0 3 848 22 35 0 0 chr11 34529342 34529371 -87314485 + AT_rich Low_complexity Low_complexity 1 29 0 3 848 380 259 9 9 chr11 34529626 34529735 -87314121 - PB1D10 SINE Alu -8 109 1 3 848 275 294 28 64 chr11 34531186 34531295 -87312561 + MIRb SINE MIR 37 141 -127 3 848 1839 213 36 3 chr11 34532812 34533202 -87310654 + MTD LTR MaLR 9 411 -8 3 848 244 235 212 10 chr11 34533927 34534026 -87309830 + L2b LINE L2 2952 3070 -305 3 848 28 0 0 0 chr11 34534147 34534175 -87309681 + AT_rich Low_complexity Low_complexity 1 28 0 4 848 1003 273 27 41 chr11 34534725 34535019 -87308837 + B4 SINE B4 1 290 -2 4 848 339 286 64 35 chr11 34536811 34537037 -87306819 - MTEa LTR MaLR -13 366 121 4 848 849 136 7 7 chr11 34537337 34537485 -87306371 + URR1A DNA MER1_type 79 226 0 4 848 1057 239 106 17 chr11 34537485 34537787 -87306069 + MTD LTR MaLR 90 405 -14 4 848 364 325 36 42 chr11 34537934 34538161 -87305695 + MIR SINE MIR 32 248 -20 4 848 194 0 39 0 chr11 34538294 34538320 -87305536 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 848 1095 66 7 0 chr11 34538320 34538457 -87305399 - B1_Mus1 SINE Alu -10 138 1 4 848 757 234 30 54 chr11 34539918 34540121 -87303735 - B3A SINE B2 0 198 1 4 848 405 291 7 90 chr11 34540137 34540292 -87303564 + MIRb SINE MIR 122 263 -5 4 848 434 187 65 9 chr11 34541238 34541346 -87302510 + B3 SINE B2 103 216 0 5 848 512 286 36 81 chr11 34542106 34542327 -87301529 - B4A SINE B4 -80 212 2 5 848 806 223 10 45 chr11 34542419 34542621 -87301235 - MTE2b LTR MaLR -1 378 184 5 848 273 239 4 73 chr11 34542697 34542794 -87301062 - MTE2b LTR MaLR -150 229 137 5 848 279 296 17 183 chr11 34542894 34543134 -87300722 + MER21B LTR ERV1 1 200 -663 5 848 275 275 14 0 chr11 34544807 34544876 -87298980 + MIRc SINE MIR 71 140 -128 5 848 577 263 97 43 chr11 34545584 34545791 -87298065 - B4 SINE B4 -74 218 1 5 848 213 125 146 0 chr11 34545791 34545833 -87298023 - B4 SINE B4 -243 49 1 5 848 349 313 26 26 chr11 34548031 34548182 -87295674 - MIR SINE MIR -38 224 74 5 848 633 259 98 141 chr11 34548249 34548645 -87295211 - MTE2a LTR MaLR 0 379 1 5 848 253 340 163 0 chr11 34548945 34549086 -87294770 - MIR SINE MIR -89 173 10 5 848 304 337 73 6 chr11 34549301 34549480 -87294376 + MLT1A LTR MaLR 181 371 -3 6 848 613 258 33 99 chr11 34549774 34549985 -87293871 + B3A SINE B2 1 197 -1 6 848 207 0 0 0 chr11 34550165 34550188 -87293668 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 848 929 136 7 13 chr11 34550189 34550338 -87293518 - B1_Mus1 SINE Alu 0 148 1 6 848 796 288 71 67 chr11 34550510 34551086 -87292770 + L1M3 LINE L1 5148 5732 -580 6 848 1038 45 0 0 chr11 34551123 34551257 -87292599 - B1_Mus2 SINE Alu -1 146 13 6 848 1266 233 56 16 chr11 34551420 34551742 -87292114 + Lx9 LINE L1 7143 7477 -167 6 848 1191 105 23 0 chr11 34551846 34552018 -87291838 + B2_Mm2 SINE B2 1 176 -19 6 848 204 40 0 0 chr11 34552048 34552073 -87291783 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 6 848 512 239 39 84 chr11 34553239 34553254 -87290602 + B1_Mus1 SINE Alu 1 12 -136 6 848 2533 156 83 64 chr11 34553254 34553773 -87290083 + RLTR24 LTR ERV1 1 529 0 7 848 623 189 43 50 chr11 34553773 34553912 -87289944 + B1_Mur1 SINE Alu 12 149 0 7 848 678 25 0 0 chr11 34555561 34555641 -87288215 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 848 647 302 16 0 chr11 34556651 34556840 -87287016 - MER2 DNA MER2_type 0 345 154 7 848 16742 144 34 20 chr11 34556893 34560411 -87283445 + L1_Mur1 LINE L1 696 4273 -1613 7 848 33280 84 8 9 chr11 34560406 34565800 -87278056 + L1Md_F2 LINE L1 190 5586 -297 7 848 7878 61 2 14 chr11 34565801 34566804 -87277052 + L1Md_F2 LINE L1 5588 6578 -4 7 848 10201 125 35 8 chr11 34566805 34569458 -87274398 + Lx2B LINE L1 4266 6993 -7 7 848 301 295 209 15 chr11 34569458 34569592 -87274264 - MER2 DNA MER2_type -185 160 1 7 848 3825 129 34 2 chr11 34570155 34570767 -87273089 - RLTR33 LTR ERVK -1 677 46 7 848 324 266 32 151 chr11 34571261 34571447 -87272409 + MTEb LTR MaLR 206 371 -8 7 848 305 289 0 67 chr11 34571599 34571688 -87272168 + BC1_Mm scRNA scRNA 2 84 -68 7 848 303 28 0 0 chr11 34571938 34571974 -87271882 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 848 290 289 52 9 chr11 34572240 34572355 -87271501 + L1MB5 LINE L1 1029 1148 -5756 8 848 334 308 93 93 chr11 34572412 34572805 -87271051 + L1MB5 LINE L1 1252 1665 -5239 8 848 310 229 150 40 chr11 34572805 34572905 -87270951 + PB1D10 SINE Alu 1 111 -6 8 848 625 303 80 37 chr11 34572905 34573545 -87270311 + L1MB5 LINE L1 1621 2424 -4678 8 848 223 225 0 27 chr11 34573581 34573767 -87270089 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 8 848 738 227 91 11 chr11 34573956 34574143 -87269713 + B3 SINE B2 15 216 0 8 848 1315 208 69 45 chr11 34574153 34574601 -87269255 + RLTR20B3 LTR ERVK 24 482 -95 8 848 246 254 0 0 chr11 34574601 34574668 -87269188 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 848 338 234 65 0 chr11 34574670 34574747 -87269109 + RLTR20B3 LTR ERVK 459 540 -23 8 848 24 0 0 0 chr11 34574750 34574774 -87269082 + AT_rich Low_complexity Low_complexity 1 24 0 8 848 345 308 73 56 chr11 34575090 34575269 -87268587 + B3A SINE B2 1 182 -16 8 848 230 247 13 0 chr11 34575269 34575346 -87268510 + (CATA)n Simple_repeat Simple_repeat 3 80 0 8 848 197 149 0 41 chr11 34575354 34575403 -87268453 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 848 964 312 89 24 chr11 34575542 34576369 -87267487 + L1MB5 LINE L1 3324 4204 -2802 8 848 230 307 39 16 chr11 34576410 34576539 -87267317 + L1MB5 LINE L1 4183 4314 -2692 8 848 1034 274 36 15 chr11 34576574 34576848 -87267008 + B4A SINE B4 9 288 -4 9 848 584 261 160 25 chr11 34576945 34577335 -87266521 + L1MB5 LINE L1 4388 4838 -2168 8 848 239 311 93 37 chr11 34577582 34577689 -87266167 - ORR1E LTR MaLR -246 113 1 9 848 363 227 181 57 chr11 34577696 34577906 -87265950 + L1MB5 LINE L1 5823 6058 -948 8 848 2169 283 86 43 chr11 34577898 34578787 -87265069 + Lx8 LINE L1 5784 6710 -763 9 848 3119 235 83 30 chr11 34578779 34579096 -87264760 + Lx9 LINE L1 5946 6279 -1365 9 848 546 16 0 0 chr11 34579096 34579159 -87264697 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 848 3119 235 83 30 chr11 34579159 34579711 -87264145 + Lx9 LINE L1 6280 6860 -784 9 848 1321 198 7 111 chr11 34579716 34579950 -87263906 + RMER17C LTR ERVK 14 227 -183 9 848 486 33 0 0 chr11 34579950 34580010 -87263846 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 848 1321 198 7 111 chr11 34580010 34580218 -87263638 + RMER17C LTR ERVK 228 410 0 9 848 2593 196 25 15 chr11 34580218 34580737 -87263119 + Lx9 LINE L1 6852 7375 -269 9 848 214 216 11 95 chr11 34580745 34580934 -87262922 + (CAGCC)n Simple_repeat Simple_repeat 1 173 0 9 848 242 202 0 122 chr11 34580967 34581164 -87262692 + (CAGCC)n Simple_repeat Simple_repeat 1 173 0 9 848 511 238 65 19 chr11 34581205 34581359 -87262497 + Lx9 LINE L1 7350 7510 -134 9 848 562 244 71 0 chr11 34581366 34581493 -87262363 - Lx9 LINE L1 -719 6925 6790 9 848 811 251 22 5 chr11 34581591 34581775 -87262081 + Lx8 LINE L1 6705 6891 -582 9 848 1338 275 100 36 chr11 34581819 34582532 -87261324 + L1MB5 LINE L1 6130 6887 -147 8 848 597 308 0 6 chr11 34585592 34585749 -87258107 + RSINE1 SINE B4 2 157 -8 1 848 300 341 14 55 chr11 34586696 34586842 -87257014 + MLT1A1 LTR MaLR 268 407 -1 1 848 210 322 21 11 chr11 34587250 34587344 -87256512 + G-rich Low_complexity Low_complexity 1 95 0 1 848 351 211 0 0 chr11 34587610 34587700 -87256156 + (TCCA)n Simple_repeat Simple_repeat 1 90 0 1 848 633 90 0 0 chr11 34588022 34588111 -87255745 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 848 233 277 0 46 chr11 34588664 34588751 -87255105 + MLT1A0 LTR MaLR 225 307 -58 1 848 225 0 0 0 chr11 34588752 34588777 -87255079 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 848 707 65 54 163 chr11 34588788 34588935 -87254921 - B1_Mm SINE Alu -2 145 15 1 848 1082 212 34 192 chr11 34589793 34590236 -87253620 + ORR1C2 LTR MaLR 1 373 -11 1 848 1155 112 0 0 chr11 34590694 34590873 -87252983 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 1 848 545 146 0 19 chr11 34590881 34590986 -87252870 + GA-rich Low_complexity Low_complexity 3 105 0 1 848 379 214 0 82 chr11 34592340 34592462 -87251394 - Lx9 LINE L1 0 7644 7533 1 848 360 287 103 38 chr11 34593082 34593351 -87250505 + MLT1B LTR MaLR 44 340 -127 1 848 507 33 0 0 chr11 34593440 34593501 -87250355 + (TTTC)n Simple_repeat Simple_repeat 3 63 0 1 848 441 283 48 14 chr11 34593675 34593883 -87249973 + MER34A1 LTR ERV1 299 513 -74 1 848 579 318 92 33 chr11 34594070 34594376 -87249480 + MLT1B LTR MaLR 4 327 -63 1 848 679 324 0 5 chr11 34594390 34594613 -87249243 + MLT1J LTR MaLR 73 294 -218 1 848 209 235 29 0 chr11 34595658 34595726 -87248130 + (CAT)n Simple_repeat Simple_repeat 2 71 0 1 848 185 300 16 0 chr11 34596344 34596419 -87247437 - MIR3 SINE MIR -98 178 101 1 848 183 333 45 30 chr11 34597632 34597765 -87246091 + MIRb SINE MIR 63 197 -71 1 848 598 281 22 31 chr11 34598235 34598463 -87245393 - RMER15 LTR ERVL -14 561 336 1 848 1604 155 16 41 chr11 34598813 34599037 -87244819 - ORR1D1 LTR MaLR -3 371 150 1 848 1644 169 34 46 chr11 34599037 34599452 -87244404 - RMER17C LTR ERVK 0 410 1 1 848 1604 155 16 41 chr11 34599452 34599543 -87244313 - ORR1D1 LTR MaLR -225 149 64 1 848 1246 27 7 0 chr11 34599543 34599689 -87244167 + B1_Mm SINE Alu 1 147 0 1 848 1352 188 34 103 chr11 34599689 34599781 -87244075 - ORR1D1 LTR MaLR -308 76 1 1 848 261 318 0 0 chr11 34599781 34599847 -87244009 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 848 4518 132 33 46 chr11 34600044 34600549 -87243307 + RLTR25A LTR ERVK 13 514 -589 1 848 438 53 0 0 chr11 34600549 34600606 -87243250 + (TTGG)n Simple_repeat Simple_repeat 2 58 0 1 848 4518 132 33 46 chr11 34600606 34600776 -87243080 + RLTR25A LTR ERVK 515 695 -408 1 848 1654 26 11 0 chr11 34600776 34600966 -87242890 + B2_Mm1a SINE B2 2 193 0 1 848 4518 132 33 46 chr11 34600966 34601196 -87242660 + RLTR25A LTR ERVK 696 907 -196 1 848 303 193 0 0 chr11 34601687 34601770 -87242086 + (CAGAGA)n Simple_repeat Simple_repeat 6 88 0 1 848 534 197 139 57 chr11 34601776 34601970 -87241886 + RLTR25A LTR ERVK 894 1103 0 1 848 2256 105 38 0 chr11 34602342 34602656 -87241200 + ORR1A3 LTR MaLR 1 326 0 1 848 1043 228 14 5 chr11 34602695 34602902 -87240954 - B3 SINE B2 -6 210 2 1 849 378 0 0 0 chr11 34603398 34603440 -87240416 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 849 1274 265 39 19 chr11 34604165 34604593 -87239263 - Lx8 LINE L1 -1651 5822 5360 1 849 231 191 0 0 chr11 34604586 34604628 -87239228 + L1M2 LINE L1 5835 5876 -421 1 849 204 368 128 50 chr11 34605689 34606110 -87237746 - L2b LINE L2 -9 3366 2913 1 849 846 108 95 6 chr11 34606136 34606248 -87237608 + URR1A DNA MER1_type 55 166 -60 1 849 2585 129 10 24 chr11 34606248 34606661 -87237195 + MTB_Mm LTR MaLR 1 407 0 1 849 846 108 95 6 chr11 34606661 34606706 -87237150 + URR1A DNA MER1_type 167 225 -1 1 849 292 273 113 25 chr11 34606775 34606978 -87236878 + MER90 LTR ERV1 76 296 -318 1 849 665 200 36 15 chr11 34607002 34607139 -87236717 + B1_Mur1 SINE Alu 4 143 -6 1 849 970 206 0 66 chr11 34607161 34607374 -87236482 - B3 SINE B2 -13 203 5 1 849 669 241 25 55 chr11 34607379 34607581 -87236275 - B3A SINE B2 -1 197 2 1 849 322 289 187 0 chr11 34607587 34607753 -87236103 + MER90 LTR ERV1 379 575 0 1 849 1141 76 7 0 chr11 34607936 34608081 -87235775 + B1_Mus1 SINE Alu 2 147 -1 1 849 709 338 43 43 chr11 34608370 34608651 -87235205 - Tigger7 DNA MER2_type -2157 334 54 1 849 212 318 0 29 chr11 34609055 34609123 -87234733 - B1F SINE Alu -63 86 21 1 849 346 138 106 12 chr11 34609228 34609451 -87234405 + (TATAG)n Simple_repeat Simple_repeat 1 243 0 1 849 352 285 65 7 chr11 34609766 34609904 -87233952 - L1MC4 LINE L1 -5498 717 572 1 849 279 241 165 0 chr11 34609970 34610049 -87233807 + MLT1A LTR MaLR 3 94 -280 1 849 441 141 0 0 chr11 34610097 34610182 -87233674 + (TC)n Simple_repeat Simple_repeat 1 85 0 1 849 786 194 130 27 chr11 34610227 34610412 -87233444 - B3 SINE B2 -7 209 6 1 849 3252 116 40 8 chr11 34610558 34611055 -87232801 + Lx3A LINE L1 6459 6971 -10 1 849 183 80 0 0 chr11 34611061 34611086 -87232770 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1 849 1807 163 143 77 chr11 34611422 34611840 -87232016 - RLTR41 LTR ERV1 0 446 1 1 849 928 198 125 0 chr11 34611978 34612170 -87231686 + B3 SINE B2 1 216 0 1 849 707 112 0 8 chr11 34612532 34612649 -87231207 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 849 825 268 26 22 chr11 34612654 34612921 -87230935 - B4A SINE B4 -22 270 3 1 849 315 310 11 0 chr11 34613100 34613187 -87230669 + PB1D10 SINE Alu 29 116 -1 1 849 630 39 0 0 chr11 34613293 34613370 -87230486 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 1 849 987 220 75 33 chr11 34613370 34613675 -87230181 - Lx9 LINE L1 -12 7632 7315 1 849 543 31 0 0 chr11 34615046 34615111 -87228745 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 849 1171 124 5 26 chr11 34615281 34615472 -87228384 + B2_Mm2 SINE B2 1 187 -8 1 849 2045 296 85 47 chr11 34616421 34617764 -87226092 + Lx8 LINE L1 4571 5993 -1480 1 849 238 139 0 0 chr11 34618059 34618095 -87225761 + ORR1A2 LTR MaLR 2 37 -290 1 849 1619 157 100 23 chr11 34618198 34618297 -87225559 - ORR1C1 LTR MaLR 0 378 276 1 849 1765 143 62 3 chr11 34618297 34618606 -87225250 - ORR1A2 LTR MaLR 0 327 1 1 849 1619 157 100 23 chr11 34618606 34618857 -87224999 - ORR1C1 LTR MaLR -103 275 1 1 849 29 28 0 0 chr11 34619186 34619222 -87224634 + AT_rich Low_complexity Low_complexity 1 36 0 1 849 3242 275 103 24 chr11 34619222 34620468 -87223388 + Lx8 LINE L1 6221 7456 -17 1 849 1531 168 208 3 chr11 34620847 34621194 -87222662 + MTD LTR MaLR 1 418 -1 1 849 4358 54 6 2 chr11 34621557 34622095 -87221761 - L1Md_F2 LINE L1 -3 6579 6040 1 849 721 158 72 50 chr11 34623990 34624170 -87219686 - B2_Mm2 SINE B2 -8 187 4 1 849 497 165 12 0 chr11 34628256 34628341 -87215515 - ORR1A3 LTR MaLR -51 275 190 1 849 25 31 0 0 chr11 34628407 34628439 -87215417 + AT_rich Low_complexity Low_complexity 1 32 0 1 849 362 285 73 51 chr11 34628748 34628885 -87214971 + B1_Mur1 SINE Alu 1 140 -9 1 849 204 40 0 0 chr11 34628888 34628913 -87214943 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 1 849 276 202 110 10 chr11 34629026 34629126 -87214730 + L1M3f LINE L1 1124 1233 -4095 1 849 1157 41 7 0 chr11 34629433 34629578 -87214278 + B1_Mus1 SINE Alu 3 148 0 1 849 1152 174 15 10 chr11 34629639 34629842 -87214014 + B3 SINE B2 7 210 -6 1 849 474 294 44 6 chr11 34630300 34630481 -87213375 + L1M3f LINE L1 2295 2482 -3843 1 849 591 214 152 18 chr11 34630630 34630854 -87213002 + L1M3f LINE L1 2686 2939 -3386 1 849 323 281 93 13 chr11 34631087 34631295 -87212561 + L1M3f LINE L1 5283 5510 -815 1 849 287 338 31 19 chr11 34631297 34631457 -87212399 + RSINE1 SINE B4 2 163 -2 1 849 398 162 109 20 chr11 34631681 34631782 -87212074 + L1MA6 LINE L1 6189 6298 -2 1 849 327 316 32 0 chr11 34632098 34632193 -87211663 + PB1D10 SINE Alu 16 113 -4 1 849 243 0 0 0 chr11 34632228 34632255 -87211601 + (T)n Simple_repeat Simple_repeat 1 27 0 1 849 1026 71 50 0 chr11 34632257 34632397 -87211459 - B1_Mm SINE Alu 0 147 1 1 849 747 33 0 0 chr11 34636342 34636432 -87207424 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 1 849 373 139 0 37 chr11 34637411 34637493 -87206363 + GA-rich Low_complexity Low_complexity 2 80 0 1 849 27 62 0 0 chr11 34637733 34637781 -87206075 + AT_rich Low_complexity Low_complexity 1 48 0 1 849 245 360 10 0 chr11 34638353 34638453 -87205403 + MIRb SINE MIR 95 195 -73 1 849 23 0 0 0 chr11 34638650 34638673 -87205183 + AT_rich Low_complexity Low_complexity 1 23 0 1 849 619 257 27 69 chr11 34639250 34639438 -87204418 - B4 SINE B4 0 292 113 1 849 741 280 109 42 chr11 34640346 34640704 -87203152 - Tigger7 DNA MER2_type -17 2474 2093 1 849 29 28 0 0 chr11 34640745 34640781 -87203075 + AT_rich Low_complexity Low_complexity 1 36 0 1 849 995 254 223 66 chr11 34641151 34641738 -87202118 + Lx7 LINE L1 6087 6765 -931 1 849 313 185 20 17 chr11 34641739 34641803 -87202053 + Lx7 LINE L1 6950 7022 -451 1 849 1251 54 0 0 chr11 34641803 34641951 -87201905 + B1_Mus1 SINE Alu 1 148 0 1 849 306 212 84 36 chr11 34641951 34641969 -87201887 + Lx7 LINE L1 7017 7036 -660 1 849 292 284 16 128 chr11 34641966 34642091 -87201765 + Lx7 LINE L1 6999 7109 -587 1 849 485 240 74 55 chr11 34642111 34642362 -87201494 + Lx7 LINE L1 7211 7470 -3 1 849 1019 108 0 0 chr11 34642378 34642517 -87201339 + B1_Mus1 SINE Alu 1 139 -9 1 849 194 262 48 16 chr11 34642891 34642953 -87200903 - L2a LINE L2 -54 3372 3309 1 849 203 276 53 0 chr11 34643324 34643400 -87200456 - L2a LINE L2 -657 2762 2683 1 849 675 194 173 15 chr11 34643432 34643766 -87200090 + MTD LTR MaLR 1 417 -2 1 849 360 345 98 20 chr11 34644558 34644812 -87199044 - L2a LINE L2 -736 2683 2410 1 849 191 311 226 6 chr11 34644930 34645111 -87198745 - L2a LINE L2 -1262 2157 1937 1 849 1162 44 0 0 chr11 34645111 34645247 -87198609 + B1_Mus1 SINE Alu 1 136 -12 1 849 183 42 0 0 chr11 34645250 34645274 -87198582 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 849 288 98 0 0 chr11 34645560 34645587 -87198269 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1 849 1133 54 0 26 chr11 34645587 34645738 -87198118 + B1_Mm SINE Alu 1 147 0 1 849 288 98 0 0 chr11 34645738 34645761 -87198095 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 1 849 3282 198 62 23 chr11 34645969 34646673 -87197183 + Lx5 LINE L1 6311 7042 -8 1 849 650 165 16 0 chr11 34647937 34648058 -87195798 - B1_Mur3 SINE Alu -1 148 26 2 849 22 24 0 45 chr11 34648639 34648666 -87195190 + AT_rich Low_complexity Low_complexity 1 26 0 2 849 3076 117 57 4 chr11 34648666 34649138 -87194718 + RLTR19 LTR ERVK 3 499 0 2 849 22 24 0 45 chr11 34649138 34649154 -87194702 + AT_rich Low_complexity Low_complexity 1 16 0 2 849 1160 120 17 6 chr11 34649212 34649388 -87194468 + B2_Mm1t SINE B2 2 179 -14 2 849 316 345 68 8 chr11 34649666 34649852 -87194004 + MER57C2 LTR ERV1 153 378 -56 2 849 1243 175 9 5 chr11 34650756 34650980 -87192876 - URR1B DNA MER1_type 0 225 1 2 849 937 304 110 12 chr11 34651736 34652146 -87191710 + Lx8 LINE L1 6903 7352 -121 2 849 1413 178 0 0 chr11 34652415 34652657 -87191199 + MTC LTR MaLR 1 242 -179 2 849 1752 107 35 73 chr11 34652671 34653014 -87190842 + RLTR8 LTR ERVK 1 330 -35 2 849 912 168 13 0 chr11 34653079 34653234 -87190622 + MTC LTR MaLR 265 421 0 2 849 216 0 0 0 chr11 34653613 34653637 -87190219 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 849 519 17 0 0 chr11 34653752 34653812 -87190044 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 849 2251 243 35 28 chr11 34653852 34654243 -87189613 - Lx5 LINE L1 -17 7033 6643 2 849 279 0 0 0 chr11 34654243 34654274 -87189582 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 849 2490 222 16 42 chr11 34654274 34655190 -87188666 - Lx5 LINE L1 -574 6886 5844 2 849 1730 143 51 0 chr11 34655190 34655484 -87188372 - ORR1B1 LTR MaLR 0 394 86 2 849 320 150 131 61 chr11 34655488 34655613 -87188243 - RMER1B Other Other -618 448 244 2 849 2204 159 80 107 chr11 34655857 34656142 -87187714 - L1_Mur2 LINE L1 -710 5167 4900 2 849 4768 70 2 5 chr11 34656142 34656769 -87187087 - L1_Mus4 LINE L1 -1 6635 6011 2 849 2204 159 80 107 chr11 34656769 34657082 -87186774 - L1_Mur2 LINE L1 -978 4899 4586 2 849 726 44 0 0 chr11 34657358 34657448 -87186408 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 849 219 337 141 22 chr11 34657825 34658010 -87185846 + L2c LINE L2 3121 3327 -60 2 849 197 108 0 26 chr11 34658361 34658399 -87185457 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 2 849 306 372 0 0 chr11 34659809 34659903 -87183953 + PB1D10 SINE Alu 19 112 -5 2 849 369 58 0 0 chr11 34660087 34660139 -87183717 + (TATG)n Simple_repeat Simple_repeat 1 52 0 2 849 721 132 76 1 chr11 34660167 34660301 -87183555 - B2_Mm2 SINE B2 -61 155 2 2 849 426 39 0 0 chr11 34660331 34660383 -87183473 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 849 1979 156 23 71 chr11 34660477 34660871 -87182985 - ORR1B1 LTR MaLR -19 375 1 2 849 423 256 97 55 chr11 34661412 34661577 -87182279 + MER5B DNA MER1_type 2 173 -5 2 849 30044 30 0 0 chr11 34663443 34668676 -87175180 + L1Md_T LINE L1 260 5589 -297 2 849 9161 4 0 1 chr11 34668676 34669673 -87174183 + L1Md_T LINE L1 5590 6585 0 2 849 621 40 0 0 chr11 34670853 34670929 -87172927 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 849 581 147 9 0 chr11 34670941 34671050 -87172806 + CT-rich Low_complexity Low_complexity 3 112 0 2 849 240 276 183 5 chr11 34671927 34672113 -87171743 + MIR SINE MIR 18 236 -26 2 849 311 320 87 10 chr11 34672263 34672471 -87171385 - L1MC5 LINE L1 -21 7940 7717 2 849 406 198 11 23 chr11 34672598 34672686 -87171170 + PB1D10 SINE Alu 21 107 -10 2 849 2416 133 0 46 chr11 34672810 34673227 -87170629 + RMER10B LTR ERVL 1 398 0 2 849 353 265 0 0 chr11 34673508 34673591 -87170265 - Charlie24 DNA MER1_type -1 2449 2367 2 849 2141 136 0 3 chr11 34674124 34674463 -87169393 + ORR1A1 LTR MaLR 1 338 -8 2 849 281 336 50 0 chr11 34675993 34676133 -87167723 - MIR SINE MIR 0 262 116 2 849 486 224 120 0 chr11 34676941 34677066 -87166790 + B3 SINE B2 71 210 -6 2 849 228 252 116 47 chr11 34677185 34677314 -87166542 + MLT1L LTR MaLR 473 610 0 2 849 188 32 0 88 chr11 34678355 34678389 -87165467 + (C)n Simple_repeat Simple_repeat 1 31 0 2 849 246 280 26 26 chr11 34679946 34680023 -87163833 - B1_Mur4 SINE Alu -72 78 2 2 849 360 0 0 0 chr11 34680124 34680164 -87163692 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 849 228 219 68 0 chr11 34680260 34680333 -87163523 + RSINE1 SINE B4 85 162 -3 2 849 395 293 15 61 chr11 34680665 34680796 -87163060 - PB1 SINE Alu -2 125 1 2 849 414 0 0 0 chr11 34681317 34681363 -87162493 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 849 221 0 35 0 chr11 34681630 34681659 -87162197 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 849 650 268 62 47 chr11 34681901 34682093 -87161763 - B3A SINE B2 -3 195 1 2 849 286 288 27 0 chr11 34682133 34682244 -87161612 + L1ME1 LINE L1 5221 5334 -812 2 849 272 268 0 0 chr11 34682281 34682352 -87161504 + L1ME1 LINE L1 5428 5498 -666 2 849 750 278 84 56 chr11 34682345 34682772 -87161084 + L1ME1 LINE L1 5741 6179 0 2 849 591 15 0 0 chr11 34682967 34683035 -87160821 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 849 204 184 0 0 chr11 34683245 34683294 -87160562 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 849 213 94 0 0 chr11 34683905 34683937 -87159919 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 849 1375 151 1 42 chr11 34684458 34684745 -87159111 - RMER19B LTR ERVK 0 902 359 2 849 2371 172 30 88 chr11 34684752 34685335 -87158521 - RMER19B LTR ERVK -240 662 77 2 849 293 273 40 128 chr11 34685349 34685576 -87158280 - RMER2 LTR ERV1 -27 540 334 2 849 337 107 18 0 chr11 34685838 34685894 -87157962 - RMER19A LTR ERVK -680 57 1 2 849 1993 173 14 0 chr11 34686099 34686464 -87157392 + ORR1C1 LTR MaLR 1 370 -8 2 849 498 244 36 29 chr11 34686468 34686607 -87157249 + ORR1C1-int LTR MaLR 1 140 -1369 2 849 428 160 13 0 chr11 34686599 34686674 -87157182 + B1_Mus2 SINE Alu 50 125 -22 2 849 5726 176 76 9 chr11 34686696 34687988 -87155868 + ORR1C1-int LTR MaLR 132 1509 0 2 849 1736 171 26 146 chr11 34687991 34688216 -87155640 + ORR1C1 LTR MaLR 5 214 -164 2 849 1208 35 7 0 chr11 34688216 34688361 -87155495 + B1_Mus2 SINE Alu 2 147 0 2 849 1736 171 26 146 chr11 34688361 34688560 -87155296 + ORR1C1 LTR MaLR 215 378 0 2 849 31 0 0 0 chr11 34688566 34688597 -87155259 + AT_rich Low_complexity Low_complexity 1 31 0 2 849 260 60 200 0 chr11 34688779 34688829 -87155027 - B1_Mus2 SINE Alu -1 146 87 2 849 207 0 0 0 chr11 34689036 34689059 -87154797 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 849 396 306 71 84 chr11 34689071 34689367 -87154489 - B4A SINE B4 0 292 1 2 849 26 0 0 0 chr11 34690505 34690531 -87153325 + AT_rich Low_complexity Low_complexity 1 26 0 2 849 8215 28 3 5 chr11 34691193 34692562 -87151294 - L1Md_F2 LINE L1 -3 6579 5211 2 849 707 177 0 37 chr11 34692835 34692970 -87150886 + B1_Mm SINE Alu 17 146 -1 2 849 216 0 0 0 chr11 34694821 34694845 -87149011 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 849 1314 132 42 0 chr11 34697071 34697284 -87146572 - Lx2 LINE L1 -1 6996 6775 2 849 343 248 28 55 chr11 34697344 34697489 -87146367 + LTR33A LTR ERVL 374 514 -6 2 849 280 274 142 0 chr11 34697673 34697786 -87146070 - MamRep137 DNA TcMar? -265 179 51 2 849 530 291 102 0 chr11 34697802 34697929 -87145927 - B1_Mur1 SINE Alu -9 140 1 2 849 23 0 0 0 chr11 34698319 34698342 -87145514 + AT_rich Low_complexity Low_complexity 1 23 0 2 849 601 286 12 0 chr11 34698386 34698547 -87145309 - RSINE1 SINE B4 0 165 3 2 849 934 23 22 29 chr11 34698718 34698854 -87145002 - L1Md_F3 LINE L1 0 6584 6450 2 849 537 269 66 65 chr11 34699167 34699336 -87144520 - L1MA4A LINE L1 -458 5845 5660 2 849 271 364 63 21 chr11 34701790 34701981 -87141875 - MER102a DNA MER1_type -50 280 82 2 849 333 333 26 13 chr11 34701984 34702139 -87141717 - LTR79 LTR ERVL -2 525 369 2 849 928 213 14 46 chr11 34703363 34703580 -87140276 - B3 SINE B2 -6 210 1 2 849 205 55 26 53 chr11 34703740 34703778 -87140078 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 2 849 231 114 0 0 chr11 34704563 34704598 -87139258 + (TTG)n Simple_repeat Simple_repeat 1 35 0 2 849 483 275 56 116 chr11 34704628 34704885 -87138971 - MLT1B LTR MaLR -1 389 149 2 849 366 194 0 0 chr11 34704885 34704952 -87138904 + BC1_Mm scRNA scRNA 4 70 -82 2 849 415 297 8 8 chr11 34704973 34705102 -87138754 - MLT1B LTR MaLR -233 157 29 2 849 725 351 45 34 chr11 34705304 34705658 -87138198 + MLT1A0 LTR MaLR 8 365 0 2 849 485 321 23 19 chr11 34705952 34706168 -87137688 + MIR SINE MIR 32 248 -14 2 849 2629 251 154 13 chr11 34706693 34707479 -87136377 - RMER1A Other Other -204 826 1 2 849 1073 111 240 0 chr11 34707511 34707682 -87136174 - B3 SINE B2 -4 212 1 2 849 2894 127 5 0 chr11 34707842 34708261 -87135595 - MTC LTR MaLR 0 421 1 2 849 35 54 0 0 chr11 34709938 34709994 -87133862 + AT_rich Low_complexity Low_complexity 1 56 0 2 849 998 278 155 31 chr11 34709994 34710440 -87133416 - Lx8 LINE L1 -1 7472 6972 2 849 21 0 0 0 chr11 34710440 34710461 -87133395 + AT_rich Low_complexity Low_complexity 1 21 0 2 849 724 250 30 20 chr11 34710482 34710682 -87133174 - B3 SINE B2 -13 203 2 2 849 21 36 0 0 chr11 34710796 34710824 -87133032 + AT_rich Low_complexity Low_complexity 1 28 0 2 849 500 276 46 23 chr11 34711021 34711195 -87132661 - MER63C DNA AcHobo -252 678 501 2 849 231 114 0 0 chr11 34711374 34711409 -87132447 + (CAGG)n Simple_repeat Simple_repeat 1 35 0 2 849 515 56 0 14 chr11 34711411 34711467 -87132389 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 849 1135 82 23 0 chr11 34711467 34711638 -87132218 + (GGAGAA)n Simple_repeat Simple_repeat 4 178 0 2 849 515 56 0 14 chr11 34711638 34711653 -87132203 + (GA)n Simple_repeat Simple_repeat 1 15 0 2 849 234 267 55 11 chr11 34711663 34711754 -87132102 + MER58B DNA MER1_type 247 341 0 2 849 860 287 59 43 chr11 34711754 34712148 -87131708 - MER63C DNA AcHobo -540 390 3 2 849 922 47 0 0 chr11 34712518 34712625 -87131231 + U6 snRNA snRNA 1 107 0 2 849 641 115 0 0 chr11 34712625 34712729 -87131127 + Lx LINE L1 6538 6641 -13 2 849 810 71 16 16 chr11 34712729 34712857 -87130999 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 2 849 411 327 57 47 chr11 34713242 34713454 -87130402 + B4A SINE B4 71 284 -8 2 849 21 0 0 0 chr11 34713762 34713783 -87130073 + AT_rich Low_complexity Low_complexity 1 21 0 3 849 244 245 188 54 chr11 34715304 34715347 -87128509 - MLT2B1 LTR ERVL 0 567 506 3 849 432 37 0 0 chr11 34715347 34715401 -87128455 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 849 244 245 188 54 chr11 34715401 34715469 -87128387 - MLT2B1 LTR ERVL -62 505 441 3 849 338 260 108 6 chr11 34715534 34715663 -87128193 - MLT2B1 LTR ERVL -306 248 112 3 849 323 237 9 111 chr11 34715720 34715860 -87127996 - MLT2B1 LTR ERVL -368 147 17 3 849 1204 235 123 22 chr11 34715844 34716209 -87127647 + MTD LTR MaLR 18 419 0 3 849 1202 261 66 90 chr11 34716209 34717126 -87126730 + MTD-int LTR MaLR 1 1014 -244 3 849 273 57 0 0 chr11 34717160 34717195 -87126661 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 849 792 233 102 107 chr11 34717201 34717620 -87126236 - MT2A LTR ERVL -61 540 3 3 849 183 42 0 0 chr11 34719483 34719507 -87124349 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 849 651 138 17 0 chr11 34719743 34719859 -87123997 + RMER1B Other Other 949 1066 0 3 849 2977 3 0 0 chr11 34720703 34721029 -87122827 - L1Md_T LINE L1 0 6582 6257 3 849 776 284 52 99 chr11 34721118 34721482 -87122374 + MLT1B LTR MaLR 4 350 -40 3 849 200 319 71 41 chr11 34722655 34722753 -87121103 - L2c LINE L2 -11 3376 3276 3 849 313 301 14 0 chr11 34724566 34724639 -87119217 - Tigger7 DNA MER2_type 0 2491 2418 3 849 186 133 0 0 chr11 34724658 34724688 -87119168 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 849 641 225 8 0 chr11 34725047 34725167 -87118689 + B1_Mur1 SINE Alu 19 139 -10 3 849 414 0 0 0 chr11 34725167 34725213 -87118643 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 849 239 224 60 0 chr11 34726150 34726217 -87117639 - L1MA6 LINE L1 -138 6162 6092 3 849 846 201 0 0 chr11 34726898 34727158 -87116698 + (CAG)n Simple_repeat Simple_repeat 1 260 0 3 849 1906 136 16 136 chr11 34727158 34727532 -87116324 + ORR1A4 LTR MaLR 1 329 0 3 849 447 198 0 0 chr11 34727532 34727551 -87116305 + (CAG)n Simple_repeat Simple_repeat 1 19 0 3 849 1969 200 40 38 chr11 34728723 34729170 -87114686 + RLTR16 LTR ERVK 1 448 -57 3 849 675 0 0 0 chr11 34729331 34729406 -87114450 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 3 849 314 196 10 0 chr11 34730000 34730097 -87113759 + CT-rich Low_complexity Low_complexity 1 98 0 3 849 581 115 18 0 chr11 34730105 34730218 -87113638 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 3 849 693 0 0 0 chr11 34730597 34730674 -87113182 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 849 428 234 166 14 chr11 34731065 34731282 -87112574 + B4A SINE B4 1 266 -26 3 849 250 306 60 43 chr11 34731829 34731945 -87111911 + MLT1L LTR MaLR 417 534 -76 3 849 987 244 118 19 chr11 34732132 34732505 -87111351 + L1MA4A LINE L1 5473 5887 -416 3 849 821 199 14 14 chr11 34732929 34733059 -87110797 + B1_Mur3 SINE Alu 5 136 -13 3 849 299 25 0 24 chr11 34733059 34733100 -87110756 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 849 821 199 14 14 chr11 34733100 34733112 -87110744 + B1_Mur3 SINE Alu 137 147 -2 3 849 254 328 15 0 chr11 34733240 34733371 -87110485 + L1_Mur3 LINE L1 1286 1418 -4462 3 849 4304 82 16 16 chr11 34733377 34733949 -87109907 + L1VL2 LINE L1 308 885 -5450 3 849 593 138 0 49 chr11 34733949 34734071 -87109785 + Lx LINE L1 6534 6649 -5 3 106 4304 82 16 16 chr11 34734071 34734116 -87109740 + L1VL2 LINE L1 886 925 -5410 3 850 489 185 89 6 chr11 34734172 34734307 -87109549 + B3 SINE B2 1 211 -5 3 850 4435 248 64 20 chr11 34734326 34735720 -87108136 + L1_Mur3 LINE L1 1473 2927 -2953 3 850 35374 66 10 9 chr11 34736157 34741576 -87102280 - L1Md_F2 LINE L1 -12 6570 1160 3 850 194 62 31 0 chr11 34741576 34741608 -87102248 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 850 4672 135 35 17 chr11 34741608 34742296 -87101560 - L1Md_F2 LINE L1 -5457 1159 448 3 850 656 252 7 34 chr11 34742305 34742453 -87101403 + B3A SINE B2 42 185 -13 3 850 221 255 38 75 chr11 34743013 34743119 -87100737 - MIR3 SINE MIR -1 207 106 3 850 249 108 0 0 chr11 34743828 34743865 -87099991 + (T)n Simple_repeat Simple_repeat 1 37 0 3 850 196 317 104 47 chr11 34743929 34744035 -87099821 - MER5B DNA MER1_type 0 178 67 3 850 306 286 61 10 chr11 34744305 34744404 -87099452 + LTR16D1 LTR ERVL 192 295 -277 3 850 665 262 27 54 chr11 34744414 34744481 -87099375 + LTR16D1 LTR ERVL 457 518 -157 3 850 2448 161 59 22 chr11 34744481 34744887 -87098969 - MTC LTR MaLR 0 421 1 3 850 665 262 27 54 chr11 34744887 34745041 -87098815 + LTR16D1 LTR ERVL 519 671 -4 3 850 26 0 0 0 chr11 34745325 34745351 -87098505 + AT_rich Low_complexity Low_complexity 1 26 0 3 850 217 318 109 30 chr11 34746780 34746981 -87096875 - L2 LINE L2 -959 2460 2244 3 850 235 218 73 0 chr11 34747024 34747079 -87096777 + ID4 SINE ID 3 61 -22 3 850 188 182 0 22 chr11 34747132 34747177 -87096679 + GA-rich Low_complexity Low_complexity 2 45 0 3 850 260 248 195 50 chr11 34747198 34747419 -87096437 + L1MEc LINE L1 158 410 -5990 3 850 395 279 67 39 chr11 34747675 34747854 -87096002 + L1M2 LINE L1 4306 4489 -1654 3 850 468 289 76 14 chr11 34747849 34748060 -87095796 + L1ME2 LINE L1 5625 5848 -316 3 850 205 267 0 0 chr11 34748636 34748681 -87095175 + MIR SINE MIR 67 111 -97 3 850 471 35 0 0 chr11 34749535 34749592 -87094264 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 850 270 0 0 0 chr11 34750494 34750524 -87093332 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 850 705 291 71 50 chr11 34750645 34750942 -87092914 + MLT1D LTR MaLR 19 321 -184 3 850 644 332 25 17 chr11 34752175 34752411 -87091445 + MER2 DNA MER2_type 91 328 -17 3 850 396 0 0 0 chr11 34752859 34752903 -87090953 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 850 226 314 43 0 chr11 34752928 34752998 -87090858 - B4A SINE B4 0 292 220 3 850 209 138 58 58 chr11 34753000 34753069 -87090787 + T-rich Low_complexity Low_complexity 1 69 0 3 850 554 302 5 91 chr11 34753074 34753271 -87090585 - B4A SINE B4 -111 181 2 3 850 669 351 42 28 chr11 34754836 34755120 -87088736 + B4A SINE B4 3 290 -2 3 850 459 0 0 0 chr11 34755120 34755171 -87088685 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 850 201 132 0 0 chr11 34755574 34755612 -87088244 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 850 319 257 13 93 chr11 34755622 34755772 -87088084 - HAL1-3A_ME LINE L1 -740 2118 1981 3 850 211 207 155 0 chr11 34755865 34755923 -87087933 + MIRc SINE MIR 77 143 -125 3 850 276 304 42 32 chr11 34755993 34756088 -87087768 + MLT1J1 LTR MaLR 52 147 -297 3 850 465 333 34 0 chr11 34756517 34756664 -87087192 + MIRb SINE MIR 7 158 -110 3 850 1412 204 118 3 chr11 34756673 34757002 -87086854 + ORR1D1 LTR MaLR 1 367 -7 3 850 818 139 32 10 chr11 34757152 34757320 -87086536 + B2_Mm2 SINE B2 14 192 -24 3 850 550 59 59 0 chr11 34757483 34757607 -87086249 - L1Md_F3 LINE L1 0 6584 6477 3 850 573 300 198 40 chr11 34758267 34758572 -87085284 - MLT1G1 LTR MaLR -243 336 11 3 850 1244 161 102 0 chr11 34758578 34758783 -87085073 - URR1A DNA MER1_type 0 226 1 3 850 381 75 0 0 chr11 34759606 34759659 -87084197 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 850 295 268 0 0 chr11 34759722 34759778 -87084078 - ID4 SINE ID -8 75 20 3 850 1554 275 33 12 chr11 34759807 34760296 -87083560 - Tigger2b DNA MER2_type -74 652 154 3 850 257 275 12 48 chr11 34760419 34760503 -87083353 - ID4_ SINE ID 0 83 3 3 850 553 294 116 119 chr11 34760643 34760724 -87083132 - MLT1A0 LTR MaLR -2 363 295 3 850 488 325 132 0 chr11 34760724 34760921 -87082935 - ID_B1 SINE B4 -1 223 1 3 850 553 294 116 119 chr11 34760921 34761167 -87082689 - MLT1A0 LTR MaLR -71 294 37 3 850 971 218 66 5 chr11 34761167 34761365 -87082491 + B3 SINE B2 3 212 -4 3 850 1149 68 7 7 chr11 34761371 34761518 -87082338 + B1_Mus2 SINE Alu 1 147 0 3 850 192 97 0 0 chr11 34761519 34761550 -87082306 + (A)n Simple_repeat Simple_repeat 1 31 0 3 850 389 227 30 20 chr11 34761646 34761745 -87082111 + RMER15 LTR ERVL 29 128 -447 3 850 309 256 117 62 chr11 34761745 34761907 -87081949 + L1MC5 LINE L1 7044 7214 -747 3 850 779 246 25 30 chr11 34762255 34762456 -87081400 + MTE2a LTR MaLR 177 376 -3 3 850 201 158 0 0 chr11 34762546 34762584 -87081272 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 850 457 322 27 66 chr11 34764348 34764531 -87079325 + MLT1C LTR MaLR 5 180 -287 3 850 25 31 0 0 chr11 34765562 34765594 -87078262 + AT_rich Low_complexity Low_complexity 1 32 0 3 850 279 0 0 0 chr11 34765660 34765691 -87078165 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 850 1256 68 0 0 chr11 34765698 34765844 -87078012 - B1_Mus2 SINE Alu 0 147 2 3 850 499 334 88 37 chr11 34766440 34767311 -87076545 + L1M2 LINE L1 1653 2612 -3937 3 850 491 221 169 6 chr11 34767431 34767608 -87076248 + L1_Mur3 LINE L1 4693 4898 -982 3 850 946 153 0 34 chr11 34767616 34767751 -87076105 + B1_Mur3 SINE Alu 6 136 -13 3 850 207 0 0 0 chr11 34767751 34767774 -87076082 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 850 946 153 0 34 chr11 34767774 34767787 -87076069 + B1_Mur3 SINE Alu 137 149 0 3 850 2891 171 69 12 chr11 34767792 34768470 -87075386 + Lx5 LINE L1 6284 7000 -50 3 850 883 284 61 51 chr11 34768509 34768999 -87074857 + L1M2 LINE L1 5548 6042 -507 3 850 13704 59 1 1 chr11 34769049 34770841 -87073015 + L1Md_F2 LINE L1 4186 5977 -605 3 850 2995 61 0 11 chr11 34770840 34771220 -87072636 + L1Md_F2 LINE L1 6184 6559 -23 3 850 306 87 0 0 chr11 34771221 34771267 -87072589 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 3 850 315 290 70 0 chr11 34771278 34771378 -87072478 + L1M2 LINE L1 5119 5225 -918 3 850 359 299 143 16 chr11 34771382 34771696 -87072160 + L1_Mm LINE L1 5221 5577 -306 3 850 1068 176 64 0 chr11 34771697 34771853 -87072003 + B3 SINE B2 1 166 -50 3 850 663 48 0 0 chr11 34771853 34771936 -87071920 + (GGAGA)n Simple_repeat Simple_repeat 4 86 0 3 850 1068 176 64 0 chr11 34771936 34771966 -87071890 + B3 SINE B2 167 198 -18 3 850 1016 146 6 0 chr11 34772070 34772248 -87071608 + GA-rich Low_complexity Low_complexity 1 179 0 3 850 754 220 132 0 chr11 34772260 34772442 -87071414 + B3 SINE B2 3 208 -8 3 850 863 87 0 8 chr11 34772490 34772617 -87071239 + (GAGAA)n Simple_repeat Simple_repeat 2 127 0 3 850 821 321 77 8 chr11 34773460 34773852 -87070004 - Lx8 LINE L1 -6 7467 7049 3 850 732 64 0 18 chr11 34773868 34773979 -87069877 - L1Md_F2 LINE L1 0 6582 6474 4 850 475 266 158 14 chr11 34774301 34774683 -87069173 + L1MB7 LINE L1 1285 1679 -5655 4 850 271 403 8 0 chr11 34774733 34774852 -87069004 + Lx8 LINE L1 7165 7284 -189 4 850 418 291 75 71 chr11 34774898 34775138 -87068718 + Lx8 LINE L1 7233 7473 0 4 850 344 290 108 23 chr11 34775152 34775494 -87068362 + L1MB7 LINE L1 1666 2036 -5298 4 850 1245 271 118 58 chr11 34775558 34776562 -87067294 + L1MB7 LINE L1 3094 4157 -2849 4 850 1025 274 75 41 chr11 34776607 34776926 -87066930 + ORR1D2 LTR MaLR 1 330 -40 4 850 5553 233 43 52 chr11 34776937 34778318 -87065538 + ORR1D2-int LTR MaLR 2 1370 0 4 850 1039 279 62 28 chr11 34778318 34778529 -87065327 + ORR1D2 LTR MaLR 1 204 -166 4 850 279 0 0 0 chr11 34778529 34778560 -87065296 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 850 1039 279 62 28 chr11 34778560 34778657 -87065199 + ORR1D2 LTR MaLR 205 308 -62 4 850 402 21 0 0 chr11 34778657 34778704 -87065152 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 850 1039 279 62 28 chr11 34778704 34778719 -87065137 + ORR1D2 LTR MaLR 309 334 -36 4 850 1416 296 52 87 chr11 34778719 34778905 -87064951 + L1MB7 LINE L1 4187 4361 -2645 4 850 428 291 104 0 chr11 34778905 34779039 -87064817 + B1_Mur2 SINE Alu 1 148 -1 4 850 1416 296 52 87 chr11 34779039 34780058 -87063798 + L1MB7 LINE L1 4362 5350 -1656 4 850 3058 23 8 13 chr11 34780090 34780268 -87063588 + MTA_Mm LTR MaLR 1 175 -221 4 850 3097 78 12 0 chr11 34780268 34780681 -87063175 - L1Md_F2 LINE L1 0 6582 6165 4 850 3058 23 8 13 chr11 34780681 34780900 -87062956 + MTA_Mm LTR MaLR 176 396 0 4 850 7698 78 43 3 chr11 34780900 34781956 -87061900 + MTA_Mm-int LTR MaLR 1 1098 0 4 850 3327 41 5 2 chr11 34781956 34782351 -87061505 + MTA_Mm LTR MaLR 1 396 0 4 850 649 240 83 128 chr11 34782387 34782744 -87061112 + L1MB7 LINE L1 5804 6140 -866 4 850 227 31 31 0 chr11 34782744 34782776 -87061080 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 850 1158 63 14 0 chr11 34782776 34782919 -87060937 - B1_Mm SINE Alu -2 145 1 4 850 1469 272 124 27 chr11 34782919 34783736 -87060120 + L1MB7 LINE L1 6141 7044 0 4 850 378 0 0 0 chr11 34783932 34783974 -87059882 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 850 575 117 0 46 chr11 34784225 34784333 -87059523 - L1Md_F2 LINE L1 0 6582 6480 4 850 831 123 0 0 chr11 34784499 34784662 -87059194 + (TGGA)n Simple_repeat Simple_repeat 4 166 0 4 850 480 311 29 48 chr11 34785016 34785222 -87058634 + MER20 DNA MER1_type 15 216 -3 4 850 2313 70 33 60 chr11 34785398 34785734 -87058122 - ORR1A2 LTR MaLR 0 327 1 4 850 309 302 28 0 chr11 34786660 34786766 -87057090 + L2a LINE L2 3314 3422 -4 4 850 241 233 17 0 chr11 34788321 34788381 -87055475 + CT-rich Low_complexity Low_complexity 2 62 0 4 850 231 269 49 49 chr11 34788605 34788687 -87055169 - LTR85a LTR Gypsy? -239 463 382 4 850 201 139 0 44 chr11 34788717 34788762 -87055094 + A-rich Low_complexity Low_complexity 4 46 0 4 850 221 238 58 70 chr11 34788811 34788897 -87054959 + MIRb SINE MIR 99 183 -85 4 850 457 270 39 91 chr11 34788932 34789140 -87054716 + B3A SINE B2 2 198 0 4 850 358 293 109 6 chr11 34789392 34789557 -87054299 - LTR85a LTR Gypsy? -520 182 1 4 850 183 139 0 0 chr11 34790091 34790127 -87053729 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 850 597 297 71 18 chr11 34790965 34791133 -87052723 + B3 SINE B2 29 205 -11 4 850 488 317 60 12 chr11 34791481 34791730 -87052126 - L4 LINE RTE -204 1825 1565 4 850 1630 175 121 12 chr11 34791965 34792311 -87051545 + ORR1C2 LTR MaLR 1 384 0 4 850 1216 186 23 0 chr11 34792321 34792541 -87051315 - URR1B DNA MER1_type 0 225 1 4 850 1138 221 96 0 chr11 34794673 34794985 -87048871 + MTD LTR MaLR 2 343 -76 4 850 47 44 0 0 chr11 34796069 34796137 -87047719 + AT_rich Low_complexity Low_complexity 1 68 0 4 850 495 48 0 0 chr11 34796146 34796208 -87047648 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 850 339 25 0 0 chr11 34796241 34796281 -87047575 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 850 556 319 92 29 chr11 34797201 34797517 -87046339 - MER63C DNA AcHobo -1 929 594 4 850 258 311 50 0 chr11 34797518 34797637 -87046219 + MER53 DNA hAT 1 125 -68 4 850 261 57 0 0 chr11 34797839 34797874 -87045982 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 850 1906 114 77 3 chr11 34797884 34798183 -87045673 - Lx4A LINE L1 -9 7049 6729 4 850 1349 98 27 0 chr11 34798194 34798377 -87045479 - B2_Mm2 SINE B2 -6 189 2 4 850 297 0 0 0 chr11 34798429 34798462 -87045394 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 850 568 231 0 92 chr11 34798462 34798581 -87045275 - B1_Mur2 SINE Alu -10 110 3 4 850 555 271 15 0 chr11 34799748 34799881 -87043975 + B1F2 SINE Alu 15 149 0 4 850 21 0 0 0 chr11 34799881 34799902 -87043954 + AT_rich Low_complexity Low_complexity 1 21 0 4 850 377 242 8 0 chr11 34799954 34800082 -87043774 + (TG)n Simple_repeat Simple_repeat 1 129 0 4 850 391 211 66 0 chr11 34800206 34800282 -87043574 + ID4 SINE ID 1 81 -2 4 850 8790 25 1 1 chr11 34800446 34801509 -87042347 - L1Md_F2 LINE L1 -1 6581 5519 4 850 378 0 0 0 chr11 34801518 34801560 -87042296 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 850 891 281 127 6 chr11 34802376 34802706 -87041150 - ORR1D2 LTR MaLR 0 370 1 4 850 311 306 161 16 chr11 34802735 34802921 -87040935 - MLT1D LTR MaLR -6 499 287 4 850 18048 17 0 0 chr11 34802921 34804964 -87038892 + L1Md_T LINE L1 3544 5586 -297 4 850 8693 27 0 1 chr11 34804964 34805961 -87037895 + L1Md_T LINE L1 5587 6582 0 4 850 870 257 56 20 chr11 34806729 34806979 -87036877 + MER2 DNA MER2_type 87 345 0 4 850 279 54 0 0 chr11 34807050 34807087 -87036769 + (A)n Simple_repeat Simple_repeat 1 37 0 4 850 751 276 65 4 chr11 34807169 34807398 -87036458 + L1ME4a LINE L1 5587 5829 -295 4 850 543 275 54 20 chr11 34807581 34807785 -87036071 - MIR SINE MIR -11 251 41 4 850 542 250 58 58 chr11 34809860 34810051 -87033805 + B3A SINE B2 2 192 -6 4 850 363 96 0 0 chr11 34810077 34810129 -87033727 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 850 508 227 0 11 chr11 34810120 34810298 -87033558 + (TA)n Simple_repeat Simple_repeat 1 176 0 4 850 270 0 0 0 chr11 34810317 34810347 -87033509 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 850 1963 90 18 0 chr11 34810357 34810635 -87033221 + ORR1A2 LTR MaLR 43 325 -2 4 850 738 194 14 7 chr11 34810646 34810786 -87033070 + B3 SINE B2 71 211 -5 4 850 261 0 0 0 chr11 34810933 34810962 -87032894 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 850 346 348 0 0 chr11 34812164 34812305 -87031551 + (TG)n Simple_repeat Simple_repeat 2 142 0 4 850 1387 191 170 6 chr11 34812621 34812932 -87030924 + ORR1D1 LTR MaLR 5 366 -8 4 850 549 0 0 0 chr11 34812967 34813028 -87030828 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 850 370 277 32 11 chr11 34813030 34813125 -87030731 - B1F1 SINE Alu -51 98 2 4 850 343 234 72 36 chr11 34813420 34813531 -87030325 + B3 SINE B2 97 211 -5 4 850 446 345 59 33 chr11 34813879 34814152 -87029704 + MLT1I LTR MaLR 84 363 -48 4 850 1787 127 74 3 chr11 34814427 34814750 -87029106 - RLTR15 LTR ERVK -13 346 1 4 850 1324 202 109 43 chr11 34815771 34816118 -87027738 - ORR1D2 LTR MaLR 0 370 1 4 850 270 281 0 0 chr11 34816251 34816315 -87027541 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 850 552 149 123 0 chr11 34816315 34816429 -87027427 - MT2A LTR ERVL -405 128 1 4 850 291 217 0 0 chr11 34816455 34816524 -87027332 - L1MA5 LINE L1 -16 6284 6216 4 850 471 48 0 0 chr11 34816643 34816705 -87027151 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 850 1999 174 70 0 chr11 34816705 34817091 -87026765 - MT2A LTR ERVL -70 463 51 4 850 244 336 88 0 chr11 34817182 34817307 -87026549 + Charlie8 DNA MER1_type 92 227 -2201 4 850 1991 142 159 0 chr11 34819111 34819450 -87024406 - ORR1B1 LTR MaLR -1 393 1 4 850 258 275 0 0 chr11 34819534 34819625 -87024231 - L1MA5 LINE L1 -1 6299 6209 4 850 553 224 124 71 chr11 34819612 34819838 -87024018 - L1MB1 LINE L1 -167 6022 5785 4 850 328 190 232 15 chr11 34819840 34819959 -87023897 - L1M2 LINE L1 -572 5728 5589 4 850 254 338 191 37 chr11 34821563 34821778 -87022078 - MLT1G1 LTR MaLR 0 579 332 4 850 202 280 0 0 chr11 34822620 34822670 -87021186 - MIR3 SINE MIR -53 155 106 4 850 386 137 81 14 chr11 34824240 34824314 -87019542 + B1_Mur3 SINE Alu 9 87 -63 4 850 261 0 0 0 chr11 34824315 34824344 -87019512 + (TAA)n Simple_repeat Simple_repeat 1 29 0 4 850 345 136 0 0 chr11 34826336 34826402 -87017454 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 850 413 302 98 40 chr11 34826566 34826863 -87016993 - MLT1C LTR MaLR -54 413 100 4 850 522 262 57 0 chr11 34827439 34827580 -87016276 - B1F SINE Alu 0 149 1 4 850 1058 282 35 63 chr11 34828155 34828522 -87015334 - MTE2a LTR MaLR -17 362 6 4 850 254 415 8 0 chr11 34828602 34828725 -87015131 + PB1 SINE Alu 2 125 -2 4 850 244 61 73 29 chr11 34829089 34829157 -87014699 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 4 850 185 328 16 0 chr11 34831765 34831826 -87012030 - L2c LINE L2 -9 3378 3317 4 850 472 347 17 35 chr11 34831907 34832137 -87011719 - MIR SINE MIR 0 262 37 4 850 301 279 41 77 chr11 34833952 34834173 -87009683 - Lx7 LINE L1 -4 7692 7480 4 850 2260 215 83 16 chr11 34834311 34834807 -87009049 - Lx7 LINE L1 -687 7009 6481 4 850 294 309 30 24 chr11 34834806 34834975 -87008881 - Lx7 LINE L1 -1610 6086 5917 4 850 246 32 0 0 chr11 34834984 34835015 -87008841 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 850 275 292 70 42 chr11 34835753 34835896 -87007960 + MER121 Unknown Unknown 102 248 -164 4 850 764 132 12 96 chr11 34836298 34836465 -87007391 - URR1B DNA MER1_type 0 225 73 4 850 23 33 0 0 chr11 34837129 34837159 -87006697 + AT_rich Low_complexity Low_complexity 1 30 0 4 850 1583 134 164 46 chr11 34837454 34837647 -87006209 - RMER17C LTR ERVK 0 410 207 4 850 419 33 33 0 chr11 34837647 34837707 -87006149 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 4 850 1583 134 164 46 chr11 34837707 34837880 -87005976 - RMER17C LTR ERVK -204 206 1 4 850 192 152 0 0 chr11 34838637 34838670 -87005186 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 4 850 4805 143 38 13 chr11 34838670 34839506 -87004350 - Lx4B LINE L1 -4 7054 6198 4 850 640 297 31 27 chr11 34840087 34840343 -87003513 + RMER15 LTR ERVL 246 502 -73 4 850 531 0 0 0 chr11 34840356 34840415 -87003441 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 850 1950 95 109 0 chr11 34841727 34842021 -87001835 - ORR1A4 LTR MaLR -2 327 2 5 850 612 200 0 0 chr11 34843329 34843504 -87000352 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 850 540 222 0 0 chr11 34843522 34843702 -87000154 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 850 593 220 7 0 chr11 34843713 34844010 -86999846 + (TG)n Simple_repeat Simple_repeat 1 299 0 5 850 311 244 103 86 chr11 34844010 34844238 -86999618 - B4A SINE B4 0 292 2 5 850 225 369 0 0 chr11 34844537 34844648 -86999208 - L1MEg LINE L1 -5140 944 834 5 850 21 0 0 0 chr11 34845488 34845509 -86998347 + AT_rich Low_complexity Low_complexity 1 21 0 5 850 462 290 32 0 chr11 34845569 34845693 -86998163 - B1F SINE Alu -6 143 16 5 850 659 316 27 9 chr11 34847592 34847812 -86996044 - LTR85b LTR Gypsy? 0 784 561 5 850 23 0 0 0 chr11 34847954 34847977 -86995879 + AT_rich Low_complexity Low_complexity 1 23 0 5 850 292 320 115 0 chr11 34848077 34848199 -86995657 - B1F SINE Alu -8 141 6 5 850 247 329 30 70 chr11 34848943 34849174 -86994682 - MIRb SINE MIR -32 236 11 5 850 276 30 0 0 chr11 34849277 34849310 -86994546 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 850 1537 211 57 32 chr11 34849964 34850365 -86993491 - MTD LTR MaLR -8 411 1 5 850 196 255 260 21 chr11 34850374 34850470 -86993386 - L2c LINE L2 0 3387 3269 5 850 984 144 91 6 chr11 34850900 34851075 -86992781 - B2_Mm2 SINE B2 -4 191 2 5 850 213 328 0 0 chr11 34851589 34851653 -86992203 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 5 850 432 0 0 0 chr11 34851664 34851712 -86992144 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 850 612 282 88 10 chr11 34852172 34852376 -86991480 + MER21B LTR ERV1 350 569 -294 5 850 417 20 0 0 chr11 34853819 34853869 -86989987 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 850 1106 82 6 0 chr11 34854492 34854651 -86989205 + B2_Mm1a SINE B2 1 160 -33 5 850 336 48 0 0 chr11 34854651 34854693 -86989163 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 850 202 267 17 0 chr11 34854713 34854773 -86989083 + (TGGG)n Simple_repeat Simple_repeat 4 64 0 5 850 458 318 19 38 chr11 34854795 34854955 -86988901 - B4A SINE B4 -19 273 117 5 850 1946 116 12 59 chr11 34854964 34855303 -86988553 - ORR1A4 LTR MaLR -6 323 1 5 850 380 182 87 48 chr11 34855305 34855409 -86988447 - B4A SINE B4 -184 108 1 5 850 929 228 119 50 chr11 34856574 34856953 -86986903 - Lx9 LINE L1 -1 7643 7239 5 850 740 240 9 41 chr11 34857051 34857252 -86986604 + B3 SINE B2 7 195 0 5 850 811 222 77 10 chr11 34857265 34857461 -86986395 + B3 SINE B2 2 210 -6 5 850 27 49 0 0 chr11 34857493 34857534 -86986322 + AT_rich Low_complexity Low_complexity 1 41 0 5 850 225 0 0 0 chr11 34857537 34857562 -86986294 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 850 1095 72 7 0 chr11 34857564 34857703 -86986153 - B1_Mus2 SINE Alu -6 141 2 5 850 384 119 0 0 chr11 34857962 34858021 -86985835 + (TGAG)n Simple_repeat Simple_repeat 4 62 0 5 850 2771 266 84 26 chr11 34858436 34859427 -86984429 + Charlie1a DNA MER1_type 3 1050 -405 5 850 8742 24 0 0 chr11 34859440 34860605 -86983251 - L1Md_T LINE L1 0 6582 5418 5 850 273 57 0 0 chr11 34860652 34860687 -86983169 + (TCC)n Simple_repeat Simple_repeat 1 35 0 5 850 319 249 132 20 chr11 34861015 34861212 -86982644 + Charlie1a DNA MER1_type 1142 1360 -95 5 850 1412 65 5 21 chr11 34861724 34861912 -86981944 + B2_Mm2 SINE B2 2 186 -9 5 850 328 299 46 51 chr11 34864730 34864927 -86978929 - L3 LINE CR1 -394 4095 3900 5 106 307 254 201 14 chr11 34865127 34865271 -86978585 - L1MA9 LINE L1 -23 6289 6119 5 851 1005 260 80 30 chr11 34866049 34866386 -86977470 + ORR1E LTR MaLR 1 354 -5 5 851 324 0 0 0 chr11 34866450 34866486 -86977370 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 851 707 280 51 34 chr11 34868374 34868666 -86975190 + L1M4 LINE L1 4564 4860 -1286 5 851 509 221 146 25 chr11 34869151 34869309 -86974547 + MER5B DNA MER1_type 2 178 0 5 851 184 211 82 66 chr11 34869416 34869477 -86974379 + MER5A DNA MER1_type 47 108 -81 5 851 523 236 34 14 chr11 34869516 34869662 -86974194 - B1F SINE Alu 0 149 1 5 851 315 49 0 0 chr11 34869857 34869898 -86973958 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 851 484 217 50 0 chr11 34870535 34870655 -86973201 - RCHARR1 DNA MER1_type -501 473 348 5 851 1851 211 76 134 chr11 34870639 34871136 -86972720 - RCHARR1 DNA MER1_type -47 927 487 5 851 461 299 142 0 chr11 34871136 34871270 -86972586 - RSINE1 SINE B4 -10 155 3 5 851 1851 211 76 134 chr11 34871270 34871564 -86972292 - RCHARR1 DNA MER1_type -488 486 182 5 851 332 294 85 63 chr11 34871955 34872239 -86971617 - MLT1C LTR MaLR -29 438 96 5 851 1085 117 38 27 chr11 34872239 34872423 -86971433 - B2_Mm2 SINE B2 -8 187 2 5 851 288 307 69 109 chr11 34872423 34872441 -86971415 - MLT1C LTR MaLR -295 95 78 5 851 282 301 43 0 chr11 34872446 34872539 -86971317 - PB1 SINE Alu -20 107 11 5 851 715 299 118 17 chr11 34872859 34873168 -86970688 - ORR1E LTR MaLR -12 367 11 5 851 180 0 0 0 chr11 34873233 34873253 -86970603 + (T)n Simple_repeat Simple_repeat 1 20 0 5 851 794 57 0 0 chr11 34873253 34873359 -86970497 - B1_Mm SINE Alu 0 147 42 5 851 261 176 77 51 chr11 34873296 34873374 -86970482 - RLTR25B LTR ERVK -519 509 430 5 851 393 259 0 0 chr11 34873376 34873550 -86970306 + CT-rich Low_complexity Low_complexity 2 175 0 5 851 336 291 0 0 chr11 34873551 34873637 -86970219 + C-rich Low_complexity Low_complexity 4 89 0 5 851 360 58 0 37 chr11 34873637 34873691 -86970165 - B1_Mus1 SINE Alu -88 60 9 5 851 306 258 45 0 chr11 34873641 34873730 -86970126 - ID_B1 SINE B4 -86 138 46 5 851 450 0 0 0 chr11 34874177 34874227 -86969629 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 851 253 329 64 7 chr11 34874783 34874924 -86968932 + L2a LINE L2 3278 3426 0 5 851 5273 130 29 4 chr11 34875196 34876032 -86967824 + Lx4A LINE L1 6196 7052 -6 5 851 210 365 37 37 chr11 34878077 34878185 -86965671 + MIR SINE MIR 75 182 -80 5 851 414 0 0 0 chr11 34878185 34878231 -86965625 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 851 3862 134 256 1 chr11 34881142 34881425 -86962431 + RMER17B LTR ERVK 1 350 -608 5 851 996 109 0 0 chr11 34881425 34881600 -86962256 + (TC)n Simple_repeat Simple_repeat 1 175 0 5 851 3862 134 256 1 chr11 34881600 34882077 -86961779 + RMER17B LTR ERVK 351 955 -3 5 851 592 158 16 24 chr11 34883069 34883193 -86960663 + ORR1D1 LTR MaLR 243 367 -11 5 851 26 0 0 0 chr11 34883335 34883361 -86960495 + AT_rich Low_complexity Low_complexity 1 26 0 5 851 188 315 52 52 chr11 34883494 34883571 -86960285 - MIRc SINE MIR -124 144 68 5 851 240 210 37 0 chr11 34884438 34884519 -86959337 + GA-rich Low_complexity Low_complexity 1 84 0 5 851 248 352 83 20 chr11 34884965 34885217 -86958639 - MLT1K LTR MaLR -183 412 145 5 851 1287 62 0 0 chr11 34885254 34885462 -86958394 + (TC)n Simple_repeat Simple_repeat 1 208 0 5 851 342 0 0 0 chr11 34885462 34885499 -86958357 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 851 1477 241 35 33 chr11 34887067 34887466 -86956390 - MTD LTR MaLR -8 411 12 5 851 314 270 11 11 chr11 34889165 34889255 -86954601 - MLT1G3 LTR MaLR -220 375 286 5 851 180 0 0 0 chr11 34889387 34889407 -86954449 + (CAAAC)n Simple_repeat Simple_repeat 4 23 0 5 851 242 311 0 26 chr11 34889481 34889557 -86954299 - MLT1G3 LTR MaLR -445 110 37 5 851 288 309 97 39 chr11 34890435 34890590 -86953266 + LTR33 LTR ERVL 3 166 -349 5 851 541 274 27 14 chr11 34890906 34891054 -86952802 + B3A SINE B2 8 157 -41 5 851 751 297 9 2 chr11 34891131 34891341 -86952515 + B3A SINE B2 4 216 0 5 851 610 235 5 137 chr11 34891365 34891426 -86952430 + Lx5 LINE L1 6551 6610 -440 5 851 1062 64 7 0 chr11 34891426 34891566 -86952290 + B1_Mus1 SINE Alu 1 141 -7 5 851 610 235 5 137 chr11 34891566 34891716 -86952140 + Lx5 LINE L1 6611 6734 -316 5 851 3321 157 47 35 chr11 34891718 34891776 -86952080 + RLTR17 LTR ERVK 4 60 -632 5 851 1260 47 0 0 chr11 34891776 34891924 -86951932 - B1_Mus1 SINE Alu 0 148 1 5 851 3321 157 47 35 chr11 34891924 34892546 -86951310 + RLTR17 LTR ERVK 61 692 0 5 851 979 315 19 35 chr11 34892546 34892865 -86950991 + Lx5 LINE L1 6729 7042 -8 5 851 534 309 90 49 chr11 34893267 34893634 -86950222 - MER47B DNA MER2_type -36 382 1 5 851 189 344 106 8 chr11 34893646 34893769 -86950087 + L2b LINE L2 3241 3375 0 5 851 592 199 34 47 chr11 34895321 34895469 -86948387 - B1_Mur1 SINE Alu -2 147 2 5 851 1652 221 41 41 chr11 34896288 34896707 -86947149 - MTD LTR MaLR 0 419 1 5 851 253 253 149 46 chr11 34897862 34897920 -86945936 + PB1D7 SINE Alu 24 92 -28 5 851 1095 242 125 46 chr11 34897920 34898271 -86945585 + MTE2a LTR MaLR 1 379 0 5 851 253 253 149 46 chr11 34898271 34898299 -86945557 + PB1D7 SINE Alu 93 119 -1 5 851 449 289 149 62 chr11 34899275 34899596 -86944260 + MLT1J1-int LTR MaLR 1022 1370 -17 5 851 229 146 20 40 chr11 34899839 34899889 -86943967 + MLT1J1 LTR MaLR 342 390 -54 5 851 320 98 0 32 chr11 34899963 34900026 -86943830 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 5 851 902 115 0 7 chr11 34900050 34900190 -86943666 + B1_Mus1 SINE Alu 9 147 -1 5 851 291 157 0 0 chr11 34900484 34900554 -86943302 + (CAGAGA)n Simple_repeat Simple_repeat 4 73 0 5 851 252 0 0 0 chr11 34900864 34900892 -86942964 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 851 250 271 107 25 chr11 34900959 34901118 -86942738 + L1M5 LINE L1 5403 5574 -599 5 851 572 261 126 0 chr11 34901403 34901610 -86942246 + MLT1D LTR MaLR 268 500 -5 5 851 393 259 9 0 chr11 34901611 34901723 -86942133 + L1M5 LINE L1 5611 5723 -450 5 851 257 260 39 13 chr11 34901903 34901981 -86941875 + ID4 SINE ID 4 83 0 5 851 204 302 16 0 chr11 34901982 34902045 -86941811 + GA-rich Low_complexity Low_complexity 2 65 0 5 851 212 120 62 36 chr11 34902103 34902215 -86941641 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 5 851 360 0 0 0 chr11 34902348 34902388 -86941468 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 851 4973 162 47 26 chr11 34902553 34903453 -86940403 - Lx5 LINE L1 0 7050 6132 5 851 223 240 20 0 chr11 34903534 34903584 -86940272 + PB1D10 SINE Alu 36 86 -31 5 851 189 0 0 0 chr11 34903786 34903807 -86940049 + (TA)n Simple_repeat Simple_repeat 2 22 0 6 851 920 322 43 8 chr11 34903988 34904495 -86939361 - L1ME1 LINE L1 -51 6128 5604 6 851 2351 274 63 117 chr11 34904900 34905841 -86938015 - Lx5 LINE L1 0 7696 6174 6 851 533 168 46 9 chr11 34905881 34905989 -86937867 - PB1D9 SINE Alu 0 120 9 6 851 298 302 164 58 chr11 34905990 34906179 -86937677 - L1ME1 LINE L1 -997 5149 4940 6 851 360 0 0 0 chr11 34906179 34906219 -86937637 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 851 369 0 0 0 chr11 34906219 34906259 -86937597 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 851 298 302 164 58 chr11 34906259 34906500 -86937356 - L1ME1 LINE L1 -1207 4939 4673 6 851 207 0 0 0 chr11 34906590 34906613 -86937243 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 851 700 199 0 7 chr11 34906615 34906752 -86937104 - B1_Mur4 SINE Alu -13 137 2 6 851 677 12 0 12 chr11 34907312 34907395 -86936461 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 6 851 187 389 61 0 chr11 34907620 34907800 -86936056 - L2a LINE L2 -294 3132 2942 6 851 438 94 0 0 chr11 34907986 34908050 -86935806 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 851 416 319 23 93 chr11 34908464 34908851 -86935005 - L2a LINE L2 -975 2444 2085 6 851 315 0 0 0 chr11 34909168 34909203 -86934653 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 851 420 320 71 16 chr11 34909310 34909504 -86934352 + L1MA4 LINE L1 5363 5625 -675 6 851 360 299 16 29 chr11 34909568 34909740 -86934116 + L1MA4 LINE L1 5787 5953 -338 6 851 216 222 0 0 chr11 34909894 34909966 -86933890 + GA-rich Low_complexity Low_complexity 3 74 0 6 851 246 62 0 0 chr11 34910767 34910799 -86933057 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 851 235 133 32 48 chr11 34910893 34910956 -86932900 + T-rich Low_complexity Low_complexity 2 63 0 6 851 532 164 36 44 chr11 34910963 34911093 -86932763 - B1_Mm SINE Alu 0 149 2 6 851 283 194 131 84 chr11 34911001 34911108 -86932748 - MT2B LTR ERVL -337 264 153 6 851 21 0 0 0 chr11 34911253 34911274 -86932582 + AT_rich Low_complexity Low_complexity 1 21 0 6 851 1118 180 15 0 chr11 34911419 34911625 -86932231 - URR1B DNA MER1_type -2 223 15 6 851 5854 209 75 27 chr11 34912001 34912111 -86931745 - Lx9 LINE L1 -7 7637 7518 6 851 372 43 0 0 chr11 34912111 34912157 -86931699 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 851 5854 209 75 27 chr11 34912157 34913348 -86930508 - Lx9 LINE L1 -127 7517 6285 6 851 294 0 21 42 chr11 34913348 34913396 -86930460 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 851 5854 209 75 27 chr11 34913396 34913524 -86930332 - Lx9 LINE L1 -1360 6284 6139 6 851 1144 240 106 12 chr11 34913849 34914171 -86929685 - MTD LTR MaLR -14 405 32 6 851 2095 144 114 8 chr11 34915000 34915377 -86928479 + MTC LTR MaLR 5 421 0 6 851 274 340 59 31 chr11 34916120 34916408 -86927448 - L1ME1 LINE L1 -46 6306 6011 6 851 283 294 131 64 chr11 34916983 34917282 -86926574 - L1ME1 LINE L1 -977 5342 5024 6 851 1132 304 34 3 chr11 34917296 34917748 -86926108 - L1MA9 LINE L1 -183 5981 5510 6 851 281 294 93 16 chr11 34917870 34918036 -86925820 - L1MA9 LINE L1 -956 5488 5317 6 851 646 289 6 6 chr11 34918075 34918256 -86925600 - B3A SINE B2 -16 182 2 6 851 318 276 62 0 chr11 34918256 34918401 -86925455 - L1MA9 LINE L1 -816 5324 5171 6 851 1618 305 112 50 chr11 34918541 34918583 -86925273 - L1ME1 LINE L1 -1403 4916 4879 6 851 882 218 119 0 chr11 34918583 34918776 -86925080 - B3 SINE B2 0 216 1 6 851 1837 289 173 36 chr11 34918776 34921066 -86922790 - L1ME1 LINE L1 -1441 4878 2247 6 851 266 206 24 121 chr11 34921135 34921218 -86922638 - ID_B1 SINE B4 -7 217 143 6 851 260 87 0 42 chr11 34921220 34921268 -86922588 - L1Md_F2 LINE L1 -12 6570 6525 6 851 357 316 129 7 chr11 34921268 34921408 -86922448 - ID_B1 SINE B4 -66 158 2 6 851 293 269 86 82 chr11 34921408 34921651 -86922205 - L1ME1 LINE L1 -4246 2154 1911 6 851 244 245 73 21 chr11 34921643 34921739 -86922117 - L1ME1 LINE L1 -3 6176 6076 6 851 481 304 63 101 chr11 34921755 34922027 -86921829 - L1ME1 LINE L1 -454 5725 5453 6 851 1072 158 112 10 chr11 34922027 34922232 -86921624 + URR1A DNA MER1_type 1 226 0 6 851 481 304 63 101 chr11 34922232 34922357 -86921499 - L1ME1 LINE L1 -727 5452 5343 6 851 649 324 53 17 chr11 34922676 34922977 -86920879 - L1MB1 LINE L1 -43 6125 5814 6 851 448 330 104 17 chr11 34923306 34923661 -86920195 - L1ME1 LINE L1 -5982 418 33 6 851 261 306 112 77 chr11 34923678 34924053 -86919803 - L2 LINE L2 -583 2836 2449 6 851 261 0 0 0 chr11 34924476 34924505 -86919351 + (A)n Simple_repeat Simple_repeat 1 29 0 6 851 7748 66 17 1 chr11 34924749 34926073 -86917783 - L1_Mus1 LINE L1 -1 6566 5215 6 851 255 119 0 0 chr11 34926070 34926112 -86917744 - Lx2 LINE L1 -786 6211 6170 6 851 695 133 243 0 chr11 34926112 34926285 -86917571 + Lx2 LINE L1 6782 6996 -1 6 851 21 0 0 0 chr11 34926285 34926306 -86917550 + AT_rich Low_complexity Low_complexity 1 21 0 6 851 1230 139 99 36 chr11 34926306 34926559 -86917297 + ORR1C2 LTR MaLR 116 384 0 6 851 243 0 0 0 chr11 34926987 34927014 -86916842 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 851 737 239 5 60 chr11 34927695 34927895 -86915961 + B3A SINE B2 5 193 -5 6 851 636 114 0 9 chr11 34927964 34928070 -86915786 + ORR1B2 LTR MaLR 263 367 0 6 851 384 280 111 7 chr11 34928205 34928349 -86915507 - MLT1J2 LTR MaLR -289 159 1 6 851 197 311 16 0 chr11 34928364 34928425 -86915431 + MIR SINE MIR 170 231 -31 6 851 573 212 0 0 chr11 34931039 34931218 -86912638 + GA-rich Low_complexity Low_complexity 1 179 0 6 851 396 0 0 0 chr11 34933513 34933557 -86910299 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 851 267 54 0 0 chr11 34934020 34934057 -86909799 + (ACTG)n Simple_repeat Simple_repeat 1 37 0 6 851 257 217 9 45 chr11 34934847 34934958 -86908898 + (CCCG)n Simple_repeat Simple_repeat 1 107 0 6 851 390 91 0 0 chr11 34938003 34938058 -86905798 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 851 230 274 55 0 chr11 34939131 34939204 -86904652 + L2a LINE L2 3345 3421 -5 6 851 741 309 59 27 chr11 34939231 34939604 -86904252 + Charlie20a DNA Charlie 126 510 -297 6 851 181 286 29 131 chr11 34939790 34939927 -86903929 + MIR SINE MIR 31 153 -109 6 851 21 36 0 0 chr11 34941235 34941263 -86902593 + AT_rich Low_complexity Low_complexity 1 28 0 6 851 961 130 14 0 chr11 34941289 34941435 -86902421 - B1_Mur2 SINE Alu -1 148 1 6 851 714 186 0 0 chr11 34942090 34942235 -86901621 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 6 851 346 273 55 0 chr11 34942432 34942542 -86901314 - PB1D10 SINE Alu -1 116 1 6 851 395 262 139 12 chr11 34942616 34942782 -86901074 - B4A SINE B4 -8 284 98 6 851 509 278 0 0 chr11 34942946 34943061 -86900795 - PB1D10 SINE Alu -2 115 1 6 851 357 261 105 26 chr11 34943228 34943342 -86900514 - B3A SINE B2 -73 125 3 6 851 532 271 47 0 chr11 34943424 34943553 -86900303 + ID_B1 SINE B4 86 220 -4 6 851 466 257 185 52 chr11 34943639 34943926 -86899930 - ORR1E LTR MaLR -15 344 20 6 851 519 117 0 0 chr11 34944240 34944334 -86899522 + (TG)n Simple_repeat Simple_repeat 2 95 0 6 851 203 164 36 0 chr11 34944343 34944398 -86899458 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 6 851 250 275 10 71 chr11 34944664 34944762 -86899094 - MIRb SINE MIR -48 220 129 6 851 214 240 0 0 chr11 34944884 34944934 -86898922 + GA-rich Low_complexity Low_complexity 1 50 0 6 851 273 263 113 48 chr11 34945284 34945408 -86898448 - MLT1A1 LTR MaLR -8 400 269 6 851 1513 59 0 5 chr11 34945886 34946072 -86897784 + B2_Mm2 SINE B2 3 187 -8 6 851 522 46 0 0 chr11 34946086 34946151 -86897705 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 851 524 252 0 10 chr11 34946164 34946268 -86897588 - RSINE1 SINE B4 -43 122 20 6 851 1292 169 0 18 chr11 34947602 34947831 -86896025 - URR1B DNA MER1_type 0 225 1 6 851 267 306 98 84 chr11 34948214 34948428 -86895428 - ORR1E LTR MaLR -122 237 21 6 851 533 221 9 9 chr11 34949160 34949274 -86894582 + PB1D10 SINE Alu 3 116 -1 6 851 604 226 117 41 chr11 34950413 34950584 -86893272 + MIR3 SINE MIR 2 185 -23 6 851 255 302 269 0 chr11 34951240 34951389 -86892467 - MLT1G LTR MaLR -197 394 206 6 851 189 107 0 0 chr11 34951489 34951517 -86892339 + (TTG)n Simple_repeat Simple_repeat 3 30 0 6 851 196 242 133 57 chr11 34951612 34951717 -86892139 + L2c LINE L2 3219 3331 -56 6 851 183 377 96 9 chr11 34951983 34952098 -86891758 + MIRb SINE MIR 21 145 -123 6 851 541 229 44 37 chr11 34952645 34952781 -86891075 - B1F2 SINE Alu 0 149 13 6 851 914 157 30 12 chr11 34953217 34953385 -86890471 - URR1A DNA MER1_type 0 226 56 6 851 244 286 76 11 chr11 34953758 34953850 -86890006 + MIRm SINE MIR 51 148 -128 6 851 486 293 8 8 chr11 34953872 34954006 -86889850 - MER5B DNA MER1_type -3 175 42 6 851 391 297 90 21 chr11 34954223 34954412 -86889444 - MamRep434 DNA TcMar -6 420 219 6 851 468 367 37 46 chr11 34954833 34955050 -86888806 - MER20 DNA MER1_type -4 215 1 6 851 258 236 13 53 chr11 34955222 34955298 -86888558 - MIRb SINE MIR -11 257 185 6 851 606 323 31 21 chr11 34955436 34955546 -86888310 - B4 SINE B4 -96 196 85 6 851 378 0 0 0 chr11 34955546 34955588 -86888268 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 851 540 0 0 0 chr11 34955588 34955647 -86888209 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 851 606 323 31 21 chr11 34955647 34955728 -86888128 - B4 SINE B4 -208 84 3 6 851 242 200 183 14 chr11 34955831 34955902 -86887954 + MER102c DNA MER1_type 171 253 -78 6 851 280 281 30 54 chr11 34956012 34956138 -86887718 - MIR SINE MIR -69 199 65 6 851 288 0 0 0 chr11 34956431 34956463 -86887393 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 851 200 277 104 60 chr11 34956825 34956975 -86886881 + MIR3 SINE MIR 11 183 -93 6 851 373 308 74 27 chr11 34957049 34957228 -86886628 - MIR SINE MIR -80 188 5 6 851 2143 179 45 21 chr11 34957598 34957975 -86885881 - MTC LTR MaLR -33 388 3 6 851 269 172 34 17 chr11 34958406 34958465 -86885391 - MIRb SINE MIR -6 262 203 6 851 228 192 106 82 chr11 34958755 34958840 -86885016 - MER88 LTR ERVL -276 188 102 6 851 1271 269 54 26 chr11 34959984 34960449 -86883407 + L1MB5 LINE L1 5477 5954 -220 6 851 540 301 26 0 chr11 34960474 34960627 -86883229 + RSINE1 SINE B4 2 158 -7 6 851 425 268 53 12 chr11 34960628 34960798 -86883058 + L1MB5 LINE L1 5961 6137 -43 6 851 595 195 145 23 chr11 34960801 34960916 -86882940 + B1_Mur3 SINE Alu 3 136 -13 6 851 208 0 62 0 chr11 34960916 34960948 -86882908 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 7 851 595 195 145 23 chr11 34960948 34960963 -86882893 + B1_Mur3 SINE Alu 137 149 0 6 851 25 0 0 0 chr11 34961149 34961174 -86882682 + AT_rich Low_complexity Low_complexity 1 25 0 7 851 1092 68 0 86 chr11 34961832 34961994 -86881862 + B1_Mus1 SINE Alu 1 148 0 7 851 395 83 17 0 chr11 34962008 34962068 -86881788 + (GGA)n Simple_repeat Simple_repeat 3 63 0 7 851 1522 0 9 0 chr11 34962068 34962298 -86881558 + (GAA)n Simple_repeat Simple_repeat 1 232 0 7 851 186 398 16 47 chr11 34962948 34963077 -86880779 - MIRc SINE MIR -111 157 33 7 851 195 283 19 0 chr11 34963361 34963414 -86880442 - MIRb SINE MIR -33 235 182 7 851 511 227 57 113 chr11 34963492 34963686 -86880170 + B3A SINE B2 1 183 -15 7 851 403 311 18 42 chr11 34963828 34963996 -86879860 - MER5A DNA MER1_type -24 165 2 7 851 331 333 17 95 chr11 34964527 34964706 -86879150 - MER5B DNA MER1_type -9 169 5 7 851 1074 85 43 0 chr11 34966227 34966368 -86877488 + B1_Mus1 SINE Alu 2 148 0 7 851 545 154 19 0 chr11 34966368 34966472 -86877384 + GA-rich Low_complexity Low_complexity 5 110 0 7 851 405 0 0 0 chr11 34967283 34967328 -86876528 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 851 265 284 41 76 chr11 34967685 34967830 -86876026 - MIR SINE MIR -1 261 122 7 851 889 288 29 60 chr11 34968009 34968360 -86875496 - MER58B DNA MER1_type 0 341 2 7 851 317 315 88 67 chr11 34969518 34969712 -86874144 + MIRb SINE MIR 25 222 -46 7 851 295 315 67 30 chr11 34969762 34969896 -86873960 - MIRc SINE MIR 0 268 130 7 851 270 0 0 0 chr11 34969950 34969980 -86873876 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 851 594 233 44 15 chr11 34970750 34970885 -86872971 + B1F1 SINE Alu 3 141 -8 7 851 544 201 119 155 chr11 34971109 34971303 -86872553 + B3A SINE B2 3 197 -1 7 851 267 279 42 56 chr11 34971377 34971449 -86872407 - MIRm SINE MIR -26 250 180 7 851 1829 51 198 0 chr11 34971567 34971824 -86872032 - L1_Mus1 LINE L1 -1 6566 6259 7 851 331 342 78 17 chr11 34971865 34972052 -86871804 + MIR SINE MIR 39 243 -25 7 851 235 262 16 32 chr11 34972275 34972338 -86871518 - MLT1I LTR MaLR 0 411 350 7 851 243 0 0 0 chr11 34973343 34973370 -86870486 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 851 333 0 0 0 chr11 34973370 34973406 -86870450 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 851 754 267 118 25 chr11 34973625 34973912 -86869944 + MTD LTR MaLR 28 345 -34 7 851 25 0 0 0 chr11 34974503 34974528 -86869328 + AT_rich Low_complexity Low_complexity 1 25 0 7 851 2037 178 46 2 chr11 34975234 34975628 -86868228 - Lx2A1 LINE L1 -4 7004 6594 7 851 289 296 74 78 chr11 34976093 34976397 -86867459 - MLT1A LTR MaLR -145 322 1 7 851 244 325 25 0 chr11 34977441 34977521 -86866335 - MLT1F2 LTR MaLR -411 149 68 7 851 770 150 234 11 chr11 34977607 34977782 -86866074 - B3 SINE B2 -2 214 1 7 851 234 62 0 0 chr11 34977950 34977982 -86865874 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 7 851 216 348 0 82 chr11 34978068 34978215 -86865641 + L2c LINE L2 3028 3162 -225 7 851 402 302 66 42 chr11 34978282 34978448 -86865408 + MER58A DNA MER1_type 1 170 -54 7 851 995 222 5 19 chr11 34978448 34978655 -86865201 + B3 SINE B2 1 204 -12 7 851 306 0 0 0 chr11 34978658 34978692 -86865164 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 7 851 184 187 115 167 chr11 34978822 34978918 -86864938 + L2c LINE L2 3293 3383 -4 7 851 474 294 103 5 chr11 34980073 34980268 -86863588 - Tigger5 DNA MER2_type -65 2341 2128 7 851 269 302 36 36 chr11 34980523 34980633 -86863223 - MIRm SINE MIR -166 110 1 7 851 477 0 0 0 chr11 34980736 34980789 -86863067 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 851 621 300 164 4 chr11 34981315 34981546 -86862310 + B4A SINE B4 2 269 -23 7 851 527 333 168 19 chr11 34981929 34982244 -86861612 - MLT1J2 LTR MaLR -21 427 66 7 851 365 0 22 0 chr11 34983616 34983661 -86860195 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 851 291 351 28 69 chr11 34984425 34984569 -86859287 - MLT1K LTR MaLR -48 547 410 7 851 311 356 59 63 chr11 34984651 34984888 -86858968 - MLT1K LTR MaLR -359 236 1 7 851 1068 228 0 0 chr11 34985902 34986113 -86857743 - B3 SINE B2 -5 211 1 7 851 245 301 46 54 chr11 34986180 34986334 -86857522 + MIR SINE MIR 32 181 -81 7 851 219 292 141 100 chr11 34986509 34986653 -86857203 - MIR SINE MIR -103 159 14 7 851 302 309 35 46 chr11 34988513 34988686 -86855170 - LTR33 LTR ERVL -67 448 278 7 851 28 48 0 0 chr11 34989065 34989107 -86854749 + AT_rich Low_complexity Low_complexity 1 42 0 7 851 305 259 0 69 chr11 34989170 34989257 -86854599 - MIRc SINE MIR -120 148 68 7 851 1415 223 39 13 chr11 34989259 34989568 -86854288 + Lx5 LINE L1 6729 7045 -5 7 851 236 131 0 21 chr11 34989572 34989619 -86854237 + (TAA)n Simple_repeat Simple_repeat 2 47 0 7 851 1159 180 32 14 chr11 34989642 34989862 -86853994 + URR1B DNA MER1_type 1 224 -1 7 851 180 0 0 0 chr11 34991381 34991401 -86852455 + (A)n Simple_repeat Simple_repeat 1 20 0 7 851 455 304 80 80 chr11 34992779 34993018 -86850838 - MIRb SINE MIR -22 246 8 7 851 437 295 87 0 chr11 34993211 34993360 -86850496 - MLT1J1 LTR MaLR 0 444 283 7 851 220 273 0 0 chr11 34993704 34993759 -86850097 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 851 192 261 0 0 chr11 34993776 34993868 -86849988 + (TG)n Simple_repeat Simple_repeat 1 92 0 7 851 204 40 0 0 chr11 34993898 34993923 -86849933 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 851 203 250 0 0 chr11 34993928 34993972 -86849884 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 7 851 243 0 0 0 chr11 34994016 34994043 -86849813 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 851 324 0 0 0 chr11 34994043 34994078 -86849778 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 851 304 253 35 35 chr11 34994502 34994588 -86849268 - MLT1A1 LTR MaLR -10 398 313 7 851 584 279 84 10 chr11 34995001 34995204 -86848652 + MER20 DNA MER1_type 1 218 -1 7 851 465 338 78 36 chr11 34995469 34995776 -86848080 + L1MEg LINE L1 1793 2112 -4130 7 851 563 249 51 81 chr11 34995894 34996091 -86847765 - B3A SINE B2 -1 197 7 7 852 505 302 124 0 chr11 34996225 34996540 -86847316 + L1MEg LINE L1 2361 2714 -3432 7 852 317 226 0 0 chr11 34996565 34996627 -86847229 + ID4_ SINE ID 4 65 -18 7 852 291 296 9 27 chr11 34996643 34996754 -86847102 + GA-rich Low_complexity Low_complexity 1 109 0 7 852 326 342 39 25 chr11 34996761 34996965 -86846891 + L1MEg LINE L1 2755 2961 -3185 7 852 441 212 263 0 chr11 34997468 34997567 -86846289 + B1_Mur1 SINE Alu 1 125 -24 7 852 772 247 88 15 chr11 34997893 34998156 -86845700 + L1MC3 LINE L1 4673 4954 -1192 7 852 1009 267 49 76 chr11 34998178 34998497 -86845359 + ORR1E-int LTR MaLR 1218 1527 -53 7 852 535 325 17 68 chr11 34998497 34998792 -86845064 + ORR1E LTR MaLR 1 276 -94 7 852 268 281 0 0 chr11 34998942 34999006 -86844850 + L1MC3 LINE L1 5563 5626 -2159 7 852 1355 274 131 41 chr11 34999003 34999777 -86844079 + L1MC3 LINE L1 5964 6806 -979 7 852 339 213 0 0 chr11 35000014 35000089 -86843767 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 852 317 305 15 0 chr11 35000101 35000232 -86843624 + L1MC3 LINE L1 6863 6995 -790 2 852 919 176 0 12 chr11 35000294 35000455 -86843401 + B2_Mm2 SINE B2 1 159 -36 3 852 2087 207 53 173 chr11 35000455 35001344 -86842512 - RMER19C LTR ERVK 0 902 1 4 852 477 0 0 0 chr11 35001367 35001420 -86842436 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 852 486 324 85 0 chr11 35001441 35001747 -86842109 + L1MC3 LINE L1 7097 7428 -357 2 852 809 190 90 189 chr11 35001980 35002435 -86841421 - RMER17C LTR ERVK 0 410 1 6 852 334 248 90 90 chr11 35002564 35002909 -86840947 + L1MC3 LINE L1 7439 7783 -2 2 852 21 0 0 0 chr11 35003057 35003078 -86840778 + AT_rich Low_complexity Low_complexity 1 21 0 7 852 312 312 132 53 chr11 35003180 35003596 -86840260 + L1M7 LINE L1 1103 1551 -4667 8 852 318 271 50 127 chr11 35003800 35004167 -86839689 - MTEa LTR MaLR -5 374 32 9 852 242 322 134 71 chr11 35004338 35004591 -86839265 + L1ME3B LINE L1 3856 4141 -2005 1 852 267 31 0 0 chr11 35004591 35004623 -86839233 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 852 242 322 134 71 chr11 35004623 35004934 -86838922 + L1ME3B LINE L1 4142 4456 -1690 1 852 340 348 79 20 chr11 35005198 35005503 -86838353 + L1ME3B LINE L1 4906 5228 -918 1 852 1047 277 59 22 chr11 35005639 35006048 -86837808 + Lx9 LINE L1 5504 5959 -1685 1 852 259 250 43 106 chr11 35006244 35006338 -86837518 + Lx9 LINE L1 6591 6678 -795 1 852 297 0 0 0 chr11 35006339 35006372 -86837484 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 852 324 0 0 0 chr11 35006372 35006407 -86837449 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 852 423 303 79 72 chr11 35006563 35006987 -86836869 + L1ME3B LINE L1 5552 5998 -175 1 852 316 328 135 32 chr11 35007211 35007463 -86836393 + L1MC5 LINE L1 7637 7914 -47 1 852 264 207 82 35 chr11 35007592 35007677 -86836179 - MIR3 SINE MIR -24 184 96 1 852 317 266 233 39 chr11 35008680 35008902 -86834954 + MIR SINE MIR 3 267 -9 1 852 947 210 63 16 chr11 35009679 35009868 -86833988 - B3 SINE B2 -4 212 15 1 852 468 0 0 0 chr11 35010845 35010897 -86832959 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 852 322 312 60 65 chr11 35011477 35011645 -86832211 - HAL1-3A_ME LINE L1 -436 2422 2256 2 852 895 337 33 21 chr11 35012760 35013093 -86830763 - MER2 DNA MER2_type -8 337 1 2 852 213 196 0 0 chr11 35014784 35014830 -86829026 + CT-rich Low_complexity Low_complexity 1 46 0 2 852 775 236 126 8 chr11 35014833 35015072 -86828784 - Lx8 LINE L1 -54 7419 7153 2 852 349 284 8 25 chr11 35018724 35018843 -86825013 + GA-rich Low_complexity Low_complexity 5 121 0 2 852 1192 70 105 0 chr11 35019064 35019236 -86824620 + B2_Mm1a SINE B2 2 191 -2 2 852 1203 48 7 7 chr11 35019243 35019391 -86824465 + B1_Mus1 SINE Alu 1 148 0 2 852 570 29 0 0 chr11 35019411 35019479 -86824377 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 852 6271 138 21 8 chr11 35020119 35020725 -86823131 - L1_Mur2 LINE L1 -1301 4576 3975 2 852 7001 43 4 0 chr11 35020725 35021560 -86822296 - L1Md_F2 LINE L1 0 6582 5745 2 852 6271 138 21 8 chr11 35021560 35021979 -86821877 - L1_Mur2 LINE L1 -1903 3974 3537 2 852 7283 156 27 9 chr11 35021980 35022306 -86821550 + L1_Mm LINE L1 4582 4905 -978 3 852 1672 149 123 29 chr11 35022306 35022680 -86821176 - RLTR9E LTR ERVK 0 409 1 3 852 7283 156 27 9 chr11 35022680 35023632 -86820224 + L1_Mm LINE L1 4906 5883 0 3 852 3332 150 12 11 chr11 35023654 35024212 -86819644 + Lx LINE L1 6096 6654 0 3 852 266 294 45 52 chr11 35024239 35024393 -86819463 + MIRb SINE MIR 75 227 -41 3 852 356 311 79 32 chr11 35024925 35025141 -86818715 - MIRb SINE MIR -10 258 33 3 852 303 328 46 39 chr11 35025149 35025222 -86818634 - MER5A1 DNA MER1_type -18 148 74 3 852 455 282 64 143 chr11 35025222 35025273 -86818583 - B4 SINE B4 -2 290 246 3 852 264 30 0 0 chr11 35025273 35025306 -86818550 + (CACG)n Simple_repeat Simple_repeat 3 35 0 3 852 455 282 64 143 chr11 35025306 35025434 -86818422 - B4 SINE B4 -47 245 141 3 852 360 77 0 0 chr11 35025434 35025486 -86818370 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 3 852 455 282 64 143 chr11 35025486 35025619 -86818237 - B4 SINE B4 -152 140 3 3 852 303 328 46 39 chr11 35025619 35025675 -86818181 - MER5A1 DNA MER1_type -93 73 18 3 852 909 246 67 92 chr11 35026326 35026715 -86817141 + MTE2a LTR MaLR 1 379 0 3 852 629 274 99 10 chr11 35026998 35027190 -86816666 + MER3 DNA MER1_type 1 209 0 4 852 225 0 0 0 chr11 35027691 35027716 -86816140 + (T)n Simple_repeat Simple_repeat 1 25 0 4 852 1181 221 205 55 chr11 35028471 35028941 -86814915 + RMER1B Other Other 15 524 -542 4 852 2411 225 247 26 chr11 35028958 35029757 -86814099 + RMER1A Other Other 42 1016 -14 4 852 231 61 0 0 chr11 35030188 35030221 -86813635 + (A)n Simple_repeat Simple_repeat 1 33 0 4 852 915 258 90 145 chr11 35030993 35031319 -86812537 + RMER1A Other Other 116 609 -457 4 852 610 214 201 11 chr11 35031542 35031731 -86812125 - URR1B DNA MER1_type 0 225 1 4 852 960 145 34 34 chr11 35032217 35032395 -86811461 + URR1B DNA MER1_type 45 222 -3 4 852 477 0 0 0 chr11 35032404 35032457 -86811399 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 852 531 0 0 0 chr11 35032457 35032515 -86811341 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 852 838 267 29 10 chr11 35032840 35033044 -86810812 + MER58A DNA MER1_type 10 217 -7 5 852 222 37 0 0 chr11 35033862 35033889 -86809967 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 852 546 29 0 0 chr11 35033891 35033959 -86809897 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 852 1284 116 154 4 chr11 35034522 35034704 -86809152 + RLTR11A LTR ERVK 261 473 -55 5 852 456 35 0 0 chr11 35034704 35034762 -86809094 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 852 1284 116 154 4 chr11 35034762 35034812 -86809044 + RLTR11A LTR ERVK 474 527 -1 5 852 1168 191 73 0 chr11 35034817 35035037 -86808819 - MT2A LTR ERVL -297 236 1 5 852 198 0 0 0 chr11 35035310 35035332 -86808524 + (TCC)n Simple_repeat Simple_repeat 1 22 0 5 852 456 241 32 79 chr11 35035792 35035918 -86807938 + RMER10B LTR ERVL 269 388 -10 5 852 783 286 78 26 chr11 35036369 35036714 -86807142 - MLT1A0 LTR MaLR 0 365 3 5 852 441 54 0 0 chr11 35036771 35036827 -86807029 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 852 306 73 0 0 chr11 35036963 35037004 -86806852 + (TGG)n Simple_repeat Simple_repeat 1 41 0 6 852 843 145 0 0 chr11 35038268 35038440 -86805416 + (CA)n Simple_repeat Simple_repeat 2 173 0 6 852 227 362 91 57 chr11 35038818 35039114 -86804742 + L2 LINE L2 1723 2028 -1391 6 852 180 125 0 0 chr11 35039802 35039834 -86804022 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 852 1007 163 120 120 chr11 35039834 35040095 -86803761 + ORR1B1 LTR MaLR 1 291 -103 6 852 635 183 130 0 chr11 35040324 35040455 -86803401 - B1_Mus1 SINE Alu 0 148 1 6 852 895 268 38 5 chr11 35040462 35040672 -86803184 - B4A SINE B4 -68 224 8 6 852 223 192 0 55 chr11 35041633 35041688 -86802168 + GA-rich Low_complexity Low_complexity 3 54 0 6 852 257 290 124 21 chr11 35041715 35041874 -86801982 + MLT1J LTR MaLR 43 210 -234 6 852 226 331 192 16 chr11 35044387 35044580 -86799276 + L2c LINE L2 3102 3328 -59 6 852 195 372 24 0 chr11 35046195 35046303 -86797553 - MIRc SINE MIR -125 143 30 7 852 311 328 46 68 chr11 35046486 35046705 -86797151 + L1MB2 LINE L1 5946 6159 -12 7 852 219 69 0 0 chr11 35047418 35047447 -86796409 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 852 243 306 0 14 chr11 35047580 35047653 -86796203 - ORR1D2 LTR MaLR -224 146 75 7 852 268 263 111 0 chr11 35047660 35047759 -86796097 + ORSL DNA Tip100 65 174 -101 7 852 231 260 0 0 chr11 35048034 35048084 -86795772 + MER117 DNA MER1_type 94 143 -54 7 852 432 0 0 0 chr11 35049287 35049335 -86794521 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 852 230 301 112 31 chr11 35050105 35050266 -86793590 + MIRc SINE MIR 38 211 -57 7 852 411 21 0 0 chr11 35050638 35050686 -86793170 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 7 852 531 0 0 0 chr11 35050812 35050871 -86792985 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 852 211 291 73 64 chr11 35050915 35051025 -86792831 + L4 LINE RTE 1912 2022 -7 8 852 328 230 78 20 chr11 35051271 35051373 -86792483 - Lx8 LINE L1 -5 7468 7361 8 852 1227 266 54 43 chr11 35051400 35051750 -86792106 - ORR1E LTR MaLR -5 354 1 8 852 311 298 49 66 chr11 35051898 35052020 -86791836 - MLT1K LTR MaLR -62 533 414 8 852 1076 154 133 31 chr11 35053086 35053273 -86790583 + MTC LTR MaLR 3 215 -206 8 852 1048 135 55 0 chr11 35053273 35053436 -86790420 + B2_Mm2 SINE B2 2 173 -22 8 852 1200 161 17 72 chr11 35053465 35053700 -86790156 + MTC LTR MaLR 200 421 0 8 852 209 229 88 84 chr11 35054082 35054223 -86789633 + MIR SINE MIR 104 245 -23 8 852 201 304 14 0 chr11 35054260 35054329 -86789527 + MIR SINE MIR 63 132 -130 8 852 1239 139 85 14 chr11 35056013 35056224 -86787632 - URR1A DNA MER1_type 0 226 1 8 852 431 286 70 19 chr11 35056233 35056390 -86787466 - MER5A1 DNA MER1_type -1 165 1 9 852 675 0 0 0 chr11 35057818 35057893 -86785963 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 9 852 378 0 0 0 chr11 35058035 35058077 -86785779 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 852 876 260 38 5 chr11 35059530 35059739 -86784117 + B3 SINE B2 1 216 0 9 852 247 217 40 48 chr11 35059760 35059886 -86783970 + (CATATA)n Simple_repeat Simple_repeat 4 128 0 9 852 386 372 61 47 chr11 35061760 35062121 -86781735 + L2a LINE L2 3041 3406 -20 9 852 183 205 0 0 chr11 35062686 35062725 -86781131 + A-rich Low_complexity Low_complexity 2 40 0 9 852 350 309 10 0 chr11 35063590 35063702 -86780154 + MLT1A1 LTR MaLR 204 363 -45 9 852 192 305 145 12 chr11 35066999 35067082 -86776774 + MIRb SINE MIR 172 265 -3 9 852 282 182 0 0 chr11 35067580 35067646 -86776210 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 852 716 292 65 14 chr11 35067646 35067924 -86775932 - B4A SINE B4 0 292 1 1 852 348 200 0 0 chr11 35069505 35069600 -86774256 + CT-rich Low_complexity Low_complexity 2 96 0 1 852 516 32 0 0 chr11 35069601 35069663 -86774193 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 1 852 782 164 62 35 chr11 35069664 35069809 -86774047 - B1_Mm SINE Alu -1 149 1 1 852 271 300 0 32 chr11 35070059 35070152 -86773704 - MLT1A1 LTR MaLR -12 396 307 1 852 1403 219 109 18 chr11 35070210 35070549 -86773307 - ORR1D1 LTR MaLR 0 374 5 1 852 259 348 25 0 chr11 35070593 35070714 -86773142 - B1F SINE Alu -21 128 5 1 852 268 225 74 120 chr11 35070692 35070827 -86773029 - MLT1A1 LTR MaLR -192 198 63 1 852 196 386 63 0 chr11 35070894 35071021 -86772835 + MIRb SINE MIR 47 181 -87 1 852 376 333 76 58 chr11 35072176 35072520 -86771336 - L2a LINE L2 -5 3421 3072 1 852 251 239 67 53 chr11 35072766 35072841 -86771015 - ID4 SINE ID -5 78 3 1 852 255 232 0 0 chr11 35074715 35074771 -86769085 - MIR SINE MIR -122 140 85 1 852 327 290 53 15 chr11 35075069 35075202 -86768654 - MER5A DNA MER1_type -7 182 45 1 852 439 296 92 36 chr11 35075424 35075620 -86768236 - MIR SINE MIR -21 241 35 1 852 1734 263 122 38 chr11 35077485 35078484 -86765372 - L1MDa LINE L1 -4009 2609 1554 1 852 558 0 0 0 chr11 35078484 35078546 -86765310 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 852 1734 263 126 43 chr11 35078546 35078780 -86765076 - L1MDa LINE L1 -5080 1553 1251 1 852 740 253 46 0 chr11 35078796 35078970 -86764886 + B3 SINE B2 2 183 -33 1 852 806 54 9 0 chr11 35078970 35079082 -86764774 + (CATA)n Simple_repeat Simple_repeat 4 116 0 1 852 420 20 0 0 chr11 35079195 35079244 -86764612 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 852 330 337 120 22 chr11 35079529 35079805 -86764051 - L1MDa LINE L1 -6018 615 313 1 852 262 22 65 22 chr11 35079912 35079958 -86763898 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 1 852 351 0 0 0 chr11 35080505 35080544 -86763312 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 852 342 0 0 0 chr11 35080544 35080582 -86763274 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 852 357 159 0 0 chr11 35083114 35083177 -86760679 + CT-rich Low_complexity Low_complexity 2 64 0 1 852 552 277 7 26 chr11 35083576 35083728 -86760128 + B1F1 SINE Alu 1 149 0 1 852 232 226 197 22 chr11 35083750 35083868 -86759988 - MIR SINE MIR -61 147 9 1 852 225 243 142 28 chr11 35084787 35084893 -86758963 - MIRb SINE MIR -128 140 23 1 852 276 271 79 14 chr11 35085443 35085532 -86758324 + MIRc SINE MIR 67 162 -46 1 852 217 317 237 16 chr11 35086325 35086511 -86757345 + MIRb SINE MIR 31 257 -11 1 852 321 267 93 0 chr11 35088096 35088182 -86755674 - MIRb SINE MIR -112 156 63 1 852 887 137 0 58 chr11 35088218 35088373 -86755483 + B1_Mur4 SINE Alu 5 150 0 1 852 660 295 79 11 chr11 35088420 35088598 -86755258 + B4 SINE B4 84 273 -19 1 852 366 23 0 0 chr11 35088601 35088644 -86755212 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 852 427 282 63 16 chr11 35089097 35089223 -86754633 + MIR SINE MIR 15 146 -116 1 852 226 388 51 0 chr11 35091224 35091322 -86752534 + MIRb SINE MIR 28 130 -138 1 852 405 0 0 0 chr11 35092870 35092915 -86750941 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 1 852 338 364 7 7 chr11 35093562 35093703 -86750153 - MER117 DNA MER1_type -17 180 40 1 852 247 356 58 0 chr11 35093942 35094046 -86749810 + MIR3 SINE MIR 88 197 -11 1 852 247 270 82 20 chr11 35094926 35095085 -86748771 + MIR SINE MIR 62 237 -31 1 852 405 0 0 0 chr11 35095776 35095821 -86748035 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 852 231 288 17 0 chr11 35096232 35096291 -86747565 - MIRc SINE MIR -120 148 89 1 852 435 38 0 0 chr11 35097176 35097229 -86746627 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 852 498 114 0 0 chr11 35098193 35098272 -86745584 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 852 279 276 34 11 chr11 35098309 35098397 -86745459 - B4A SINE B4 -196 96 7 1 852 297 0 0 0 chr11 35098478 35098511 -86745345 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 852 206 244 112 34 chr11 35098688 35098777 -86745079 - MIR3 SINE MIR -41 167 72 1 852 250 325 49 16 chr11 35098790 35098912 -86744944 - L2a LINE L2 -29 3397 3272 1 852 1090 276 18 101 chr11 35099258 35099656 -86744200 + MTE2a LTR MaLR 1 365 -14 1 852 318 275 129 11 chr11 35099704 35100034 -86743822 + L1MA6 LINE L1 5895 6290 -10 1 852 26 50 0 0 chr11 35100137 35100177 -86743679 + AT_rich Low_complexity Low_complexity 1 40 0 1 852 1108 163 91 5 chr11 35101183 35101380 -86742476 + B3 SINE B2 3 216 0 1 852 636 158 0 0 chr11 35101400 35101514 -86742342 + GA-rich Low_complexity Low_complexity 3 116 0 1 852 285 261 87 63 chr11 35101995 35102122 -86741734 + MER113A DNA MER1_type 28 157 -157 1 852 448 262 51 70 chr11 35102950 35103106 -86740750 - MER5A DNA MER1_type -36 153 1 1 852 429 225 11 24 chr11 35103432 35103538 -86740318 + B1_Mus2 SINE Alu 46 149 0 1 852 306 340 10 20 chr11 35104189 35104291 -86739565 - L1M5 LINE L1 -440 5684 5584 1 852 294 95 0 0 chr11 35104401 35104443 -86739413 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 1 852 452 320 101 77 chr11 35105085 35105450 -86738406 + MLT1A1 LTR MaLR 35 408 0 1 852 186 340 56 9 chr11 35107279 35107386 -86736470 + MIRc SINE MIR 22 133 -135 1 852 540 266 188 29 chr11 35107675 35107915 -86735941 - MLT1D LTR MaLR 0 505 228 1 852 847 221 70 10 chr11 35109300 35109501 -86734355 + ID_B1 SINE B4 1 213 -11 1 852 766 232 41 59 chr11 35110003 35110223 -86733633 + B3 SINE B2 1 216 0 1 852 1370 156 0 62 chr11 35111865 35112105 -86731751 + URR1B DNA MER1_type 1 225 0 1 852 336 281 24 66 chr11 35112383 35112403 -86731453 + RMER17D LTR ERVK 285 301 -588 1 852 360 0 0 0 chr11 35112403 35112443 -86731413 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 852 231 103 0 0 chr11 35112443 35112481 -86731375 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 852 336 281 24 66 chr11 35112481 35112748 -86731108 + RMER17D LTR ERVK 302 560 -329 1 852 180 364 0 10 chr11 35113048 35113148 -86730708 + MIR SINE MIR 112 210 -52 1 852 216 321 160 49 chr11 35114060 35114204 -86729652 + MIR SINE MIR 6 165 -97 1 852 824 237 231 36 chr11 35114701 35115038 -86728818 + L1MB3 LINE L1 5756 6158 -25 1 852 507 17 0 0 chr11 35115196 35115256 -86728600 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 852 419 325 78 89 chr11 35115257 35115514 -86728342 - LTR33 LTR ERVL -254 261 8 1 852 1090 141 5 37 chr11 35115615 35115806 -86728050 - URR1A DNA MER1_type -2 224 40 1 852 219 271 139 50 chr11 35115867 35115968 -86727888 - MIRm SINE MIR -146 130 21 1 852 255 31 0 0 chr11 35116134 35116166 -86727690 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 852 305 226 40 145 chr11 35116498 35116622 -86727234 - MLT1C LTR MaLR -26 441 331 1 852 229 358 65 76 chr11 35116827 35117117 -86726739 + MLT1A LTR MaLR 67 353 -21 1 852 223 362 26 31 chr11 35117658 35117852 -86726004 - L2b LINE L2 -160 3215 3023 1 852 674 311 91 24 chr11 35118408 35118695 -86725161 - MER2 DNA MER2_type -39 306 1 1 852 219 69 0 0 chr11 35119846 35119875 -86723981 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 852 1102 92 0 0 chr11 35122460 35122602 -86721254 + B1_Mur4 SINE Alu 3 144 -6 1 852 539 291 83 102 chr11 35123193 35123565 -86720291 - MLT1A0 LTR MaLR 0 365 1 1 852 1338 120 18 23 chr11 35123704 35123925 -86719931 - URR1B DNA MER1_type -5 220 1 1 852 350 322 146 27 chr11 35124397 35124617 -86719239 + MIR SINE MIR 14 259 -3 1 852 1264 148 69 0 chr11 35124670 35124872 -86718984 + URR1A DNA MER1_type 2 217 -9 1 852 233 143 0 0 chr11 35124872 35124907 -86718949 + URR1B DNA MER1_type 182 216 -9 1 852 257 108 0 0 chr11 35124905 35124942 -86718914 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35124940 35124977 -86718879 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35124975 35125012 -86718844 + URR1B DNA MER1_type 180 216 -9 1 852 239 135 0 0 chr11 35125045 35125082 -86718774 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35125080 35125117 -86718739 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35125115 35125152 -86718704 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35125150 35125187 -86718669 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35125185 35125222 -86718634 + URR1B DNA MER1_type 180 216 -9 1 852 239 135 0 0 chr11 35125220 35125257 -86718599 + URR1B DNA MER1_type 180 216 -9 1 852 239 135 0 0 chr11 35125255 35125292 -86718564 + URR1B DNA MER1_type 180 216 -9 1 852 247 135 0 0 chr11 35125290 35125327 -86718529 + URR1B DNA MER1_type 180 216 -9 1 852 239 135 0 0 chr11 35125325 35125362 -86718494 + URR1B DNA MER1_type 180 216 -9 1 852 257 108 0 0 chr11 35125360 35125397 -86718459 + URR1B DNA MER1_type 180 216 -9 1 852 247 135 0 0 chr11 35125395 35125432 -86718424 + URR1B DNA MER1_type 180 216 -9 1 852 293 131 0 21 chr11 35125430 35125477 -86718379 + URR1B DNA MER1_type 180 225 0 1 106 211 184 0 39 chr11 35127263 35127314 -86716542 + CT-rich Low_complexity Low_complexity 4 52 0 1 853 429 20 0 0 chr11 35127330 35127380 -86716476 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 1 853 490 316 33 33 chr11 35128053 35128233 -86715623 + MER58A DNA MER1_type 45 224 0 1 853 211 269 158 21 chr11 35129637 35129732 -86714124 + B1F SINE Alu 33 140 -9 1 853 441 290 53 15 chr11 35129744 35129877 -86713979 + B1F SINE Alu 4 141 -8 1 853 222 304 18 0 chr11 35129903 35129959 -86713897 + ID4_ SINE ID 11 67 -16 1 853 701 267 84 5 chr11 35130471 35130674 -86713182 + MER2 DNA MER2_type 87 305 -40 1 853 416 301 47 20 chr11 35130907 35131056 -86712800 - MLT1N2 LTR MaLR -311 251 99 1 853 225 0 0 0 chr11 35131079 35131104 -86712752 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 853 384 22 0 0 chr11 35131104 35131148 -86712708 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 853 255 103 0 0 chr11 35131360 35131399 -86712457 + (CAGGG)n Simple_repeat Simple_repeat 1 39 0 1 853 603 279 20 45 chr11 35132224 35132423 -86711433 - B3A SINE B2 -3 195 2 1 853 281 238 24 36 chr11 35132641 35132724 -86711132 - MLT1D LTR MaLR -146 359 278 1 853 982 174 120 5 chr11 35132865 35133056 -86710800 + URR1A DNA MER1_type 1 213 -13 1 853 312 204 111 22 chr11 35133111 35133201 -86710655 - MLT1D LTR MaLR -401 104 7 1 853 180 0 0 0 chr11 35134169 35134189 -86709667 + (C)n Simple_repeat Simple_repeat 1 20 0 1 853 303 324 65 55 chr11 35134857 35135056 -86708800 - L1ME4a LINE L1 -10 6114 5914 1 853 2292 78 69 0 chr11 35135972 35136278 -86707578 + ORR1A2 LTR MaLR 1 327 0 1 853 340 297 62 15 chr11 35136310 35136329 -86707527 + B4 SINE B4 67 151 -141 1 853 360 194 128 88 chr11 35136329 35136431 -86707425 + MT2B LTR ERVL 152 257 -344 2 853 742 193 15 0 chr11 35136341 35136476 -86707380 + B1_Mus2 SINE Alu 11 147 0 2 853 496 257 20 73 chr11 35137538 35137689 -86706167 - B3A SINE B2 -55 143 1 2 853 350 246 10 41 chr11 35137696 35137794 -86706062 - PB1D7 SINE Alu -20 130 42 2 853 23 0 0 0 chr11 35137812 35137835 -86706021 + AT_rich Low_complexity Low_complexity 1 23 0 2 853 554 28 14 0 chr11 35138767 35138839 -86705017 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 853 234 0 0 0 chr11 35139402 35139428 -86704428 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 853 204 40 0 0 chr11 35140248 35140273 -86703583 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 2 853 466 303 130 10 chr11 35140407 35140607 -86703249 + MER2 DNA MER2_type 2 225 -120 2 853 549 224 159 68 chr11 35141318 35141481 -86702375 + B3A SINE B2 9 186 -9 2 853 295 265 126 91 chr11 35143298 35143520 -86700336 + MER31B LTR ERV1 2 337 -129 2 853 205 222 14 27 chr11 35143561 35143635 -86700221 + CT-rich Low_complexity Low_complexity 3 75 0 2 853 744 150 0 0 chr11 35143836 35143963 -86699893 + (GGA)n Simple_repeat Simple_repeat 2 128 0 2 853 186 43 0 0 chr11 35144159 35144182 -86699674 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 853 329 281 40 40 chr11 35144429 35144555 -86699301 + L1MEe LINE L1 686 811 -4043 2 853 536 279 139 65 chr11 35144583 35144828 -86699028 - MLT1A0 LTR MaLR -19 346 84 2 853 450 269 40 79 chr11 35144829 35144879 -86698977 - B2_Mm2 SINE B2 -1 194 147 2 853 303 28 0 0 chr11 35144879 35144915 -86698941 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 853 675 269 40 79 chr11 35144915 35145066 -86698790 - B3A SINE B2 -45 153 1 2 853 278 303 41 102 chr11 35145066 35145146 -86698710 - MLT1A1 LTR MaLR -335 73 3 2 853 532 40 0 26 chr11 35145714 35145791 -86698065 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 853 191 380 14 7 chr11 35146875 35147018 -86696838 + MIR SINE MIR 108 251 -11 2 853 273 288 8 59 chr11 35147058 35147176 -86696680 - MLT1N2 LTR MaLR -8 554 443 2 853 289 308 32 24 chr11 35148257 35148380 -86695476 - MIRc SINE MIR -67 201 78 2 853 216 290 31 26 chr11 35149640 35149727 -86694129 - MIR SINE MIR -86 190 93 2 853 27 0 0 0 chr11 35150799 35150826 -86693030 + AT_rich Low_complexity Low_complexity 1 27 0 2 853 209 234 0 21 chr11 35151480 35151528 -86692328 + CT-rich Low_complexity Low_complexity 2 48 0 2 853 931 249 84 73 chr11 35152291 35152577 -86691279 - B4 SINE B4 0 292 4 2 853 350 297 16 8 chr11 35152840 35152969 -86690887 - L1ME4a LINE L1 -253 5871 5742 2 853 290 286 13 81 chr11 35153483 35153642 -86690214 + MIRb SINE MIR 19 172 -96 2 853 407 19 19 0 chr11 35153765 35153817 -86690039 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 853 391 195 21 51 chr11 35153817 35154154 -86689702 + (TCTCTG)n Simple_repeat Simple_repeat 1 326 0 2 853 182 194 0 14 chr11 35154199 35154272 -86689584 + CT-rich Low_complexity Low_complexity 1 72 0 2 853 315 0 0 0 chr11 35156917 35156952 -86686904 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 853 288 0 0 0 chr11 35158415 35158447 -86685409 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 2 853 780 234 36 22 chr11 35158449 35158647 -86685209 - B3 SINE B2 -14 202 1 2 853 454 214 0 33 chr11 35158786 35158878 -86684978 - B3 SINE B2 -123 93 5 2 853 221 152 26 143 chr11 35158969 35159046 -86684810 + MIRb SINE MIR 29 96 -172 2 853 369 0 0 0 chr11 35160987 35161028 -86682828 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 853 310 359 43 76 chr11 35161117 35161301 -86682555 - MIRc SINE MIR -89 179 2 2 853 606 28 0 0 chr11 35161505 35161577 -86682279 + (TC)n Simple_repeat Simple_repeat 2 73 0 2 853 291 221 0 105 chr11 35161924 35162000 -86681856 + ID4_ SINE ID 3 70 -13 2 853 217 343 87 10 chr11 35162478 35162581 -86681275 + L2a LINE L2 3273 3383 -43 2 853 279 0 0 0 chr11 35162620 35162651 -86681205 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 853 316 191 0 42 chr11 35162791 35162862 -86680994 + B1_Mur4 SINE Alu 82 149 -1 2 853 3404 35 5 0 chr11 35163367 35163761 -86680095 + MTA_Mm LTR MaLR 1 396 0 2 853 216 97 0 0 chr11 35165243 35165274 -86678582 + (TTTCC)n Simple_repeat Simple_repeat 4 34 0 2 853 459 152 0 0 chr11 35165435 35165514 -86678342 + CT-rich Low_complexity Low_complexity 2 80 0 2 853 191 349 123 0 chr11 35165933 35166079 -86677777 + L2a LINE L2 3263 3426 0 2 853 180 0 0 0 chr11 35166169 35166189 -86677667 + (TGGA)n Simple_repeat Simple_repeat 3 22 0 2 853 3098 101 66 58 chr11 35166189 35166704 -86677152 - MURVY-LTR LTR ERV1 0 519 1 2 853 1107 125 21 21 chr11 35166704 35167040 -86676816 + (TGGA)n Simple_repeat Simple_repeat 1 336 0 2 853 241 196 43 21 chr11 35168794 35168841 -86675015 + RSINE1 SINE B4 3 50 -115 2 853 279 0 0 0 chr11 35171307 35171338 -86672518 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 853 510 46 0 0 chr11 35171338 35171402 -86672454 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 853 2016 266 69 20 chr11 35171552 35172251 -86671605 - L1MB7 LINE L1 -16 6168 5436 2 853 751 215 64 39 chr11 35173354 35173557 -86670299 + B3 SINE B2 1 208 -8 2 853 297 0 0 0 chr11 35173559 35173592 -86670264 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 853 188 275 225 51 chr11 35175109 35175247 -86668609 + L2b LINE L2 3209 3370 -5 2 853 465 66 0 0 chr11 35175480 35175541 -86668315 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 2 853 273 29 0 0 chr11 35177342 35177376 -86666480 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 853 294 325 123 41 chr11 35177454 35177624 -86666232 + MER5C1 DNA MER1_type 1 184 -79 2 853 396 0 0 0 chr11 35177641 35177685 -86666171 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 853 415 143 0 16 chr11 35179603 35179667 -86664189 + B3 SINE B2 52 114 -102 2 853 185 286 12 94 chr11 35179913 35179998 -86663858 - MIRm SINE MIR -133 143 66 2 853 182 344 62 0 chr11 35180637 35180701 -86663155 + L2a LINE L2 3357 3424 -2 2 853 323 288 40 0 chr11 35180881 35180981 -86662875 - B3A SINE B2 -14 202 96 2 853 414 0 0 0 chr11 35182892 35182938 -86660918 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 853 3624 79 148 0 chr11 35184929 35185436 -86658420 - MT2B2 LTR ERVL -2 582 1 2 853 228 67 0 0 chr11 35185843 35185873 -86657983 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 2 853 909 162 0 33 chr11 35185873 35186019 -86657837 - B1_Mur4 SINE Alu -8 142 1 2 853 651 217 99 64 chr11 35186025 35186227 -86657629 - B3 SINE B2 -7 209 1 2 853 405 0 0 0 chr11 35186238 35186283 -86657573 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 2 853 423 136 0 0 chr11 35186834 35186915 -86656941 - L1Md_F2 LINE L1 0 6582 6502 2 853 477 0 0 0 chr11 35187830 35187883 -86655973 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 853 1673 131 269 9 chr11 35189565 35189884 -86653972 + MTC LTR MaLR 20 421 0 2 853 4778 168 123 21 chr11 35189885 35190885 -86652971 + MTC-int LTR MaLR 2 1103 -155 2 853 1750 145 134 20 chr11 35190893 35191251 -86652605 + MTC LTR MaLR 23 421 0 2 853 279 292 258 12 chr11 35191790 35191953 -86651903 + MER3 DNA MER1_type 7 209 0 2 853 257 241 37 0 chr11 35191910 35191964 -86651892 - MER3 DNA MER1_type -119 90 35 2 853 208 253 56 22 chr11 35192241 35192330 -86651526 - MIRb SINE MIR -134 134 43 2 853 367 336 25 0 chr11 35193043 35193162 -86650694 - MLT1J1 LTR MaLR -321 123 2 2 853 311 355 54 41 chr11 35193183 35193330 -86650526 - MER58B DNA MER1_type -10 331 183 2 853 306 73 0 0 chr11 35193887 35193928 -86649928 + (ATG)n Simple_repeat Simple_repeat 3 43 0 2 853 378 0 0 0 chr11 35193941 35193983 -86649873 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 853 719 143 124 23 chr11 35194037 35194166 -86649690 + B1_Mur4 SINE Alu 1 142 -8 2 853 187 259 18 18 chr11 35197054 35197109 -86646747 + L2a LINE L2 3100 3154 -272 2 853 225 0 0 0 chr11 35197351 35197376 -86646480 + (A)n Simple_repeat Simple_repeat 1 25 0 2 853 265 164 45 0 chr11 35198539 35198606 -86645250 + CT-rich Low_complexity Low_complexity 2 71 0 2 853 23 0 0 0 chr11 35198683 35198706 -86645150 + GC_rich Low_complexity Low_complexity 1 23 0 2 853 272 83 26 53 chr11 35199912 35199988 -86643868 + T-rich Low_complexity Low_complexity 2 75 0 2 853 180 0 0 0 chr11 35200028 35200048 -86643808 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2 853 348 119 0 0 chr11 35200199 35200258 -86643598 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 853 364 226 147 0 chr11 35200265 35200367 -86643489 - B3A SINE B2 -80 118 2 2 853 481 198 0 12 chr11 35200385 35200467 -86643389 - ID4 SINE ID -1 82 2 2 853 386 344 76 15 chr11 35202099 35202297 -86641559 + MIRc SINE MIR 53 262 -6 2 853 459 0 0 0 chr11 35203170 35203221 -86640635 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 853 348 292 49 29 chr11 35203385 35203577 -86640279 + MIRb SINE MIR 38 233 -35 2 853 207 0 0 0 chr11 35204169 35204192 -86639664 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 853 485 198 8 0 chr11 35204744 35204870 -86638986 + GA-rich Low_complexity Low_complexity 1 127 0 2 853 459 0 0 0 chr11 35206030 35206081 -86637775 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 853 1281 106 37 0 chr11 35206143 35206331 -86637525 - B2_Mm2 SINE B2 0 195 1 2 853 458 265 41 0 chr11 35206431 35206529 -86637327 - B4A SINE B4 -190 102 1 2 853 576 325 108 37 chr11 35206529 35206826 -86637030 - MLT1A0 LTR MaLR -46 319 2 3 853 183 129 0 0 chr11 35207834 35207865 -86635991 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 853 182 167 182 18 chr11 35211628 35211683 -86632173 - L4 LINE RTE -261 1768 1705 3 853 189 0 0 0 chr11 35212490 35212511 -86631345 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 853 288 0 0 0 chr11 35212511 35212542 -86631314 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 853 270 173 25 74 chr11 35212623 35212704 -86631152 - Lx9 LINE L1 -1 7643 7567 3 853 295 320 127 8 chr11 35212776 35212902 -86630954 + MIR SINE MIR 13 153 -109 3 853 662 155 112 0 chr11 35212945 35213061 -86630795 + B1_Mus1 SINE Alu 7 135 -13 3 853 881 298 45 120 chr11 35213291 35213733 -86630123 - MER44B DNA MER2_type -130 420 12 3 853 1669 36 0 0 chr11 35213745 35213937 -86629919 + B2_Mm1a SINE B2 2 193 0 3 853 788 278 151 16 chr11 35214018 35214322 -86629534 - MER2 DNA MER2_type 0 345 1 3 853 276 30 0 0 chr11 35215109 35215142 -86628714 + (TGG)n Simple_repeat Simple_repeat 3 35 0 3 853 203 162 0 26 chr11 35215359 35215397 -86628459 + G-rich Low_complexity Low_complexity 5 41 0 3 853 237 281 18 0 chr11 35215745 35215802 -86628054 + Charlie22a DNA MER1_type 1 58 -433 3 853 254 29 29 0 chr11 35216114 35216149 -86627707 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 853 414 0 0 0 chr11 35216271 35216317 -86627539 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 853 477 122 0 0 chr11 35216517 35216591 -86627265 + (TGG)n Simple_repeat Simple_repeat 3 76 0 3 853 207 0 0 0 chr11 35218358 35218381 -86625475 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 853 318 261 151 11 chr11 35220813 35220906 -86622950 - MER81 DNA AcHobo -8 106 1 3 853 198 0 0 0 chr11 35221186 35221208 -86622648 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 853 241 324 136 29 chr11 35221463 35221603 -86622253 - MIRb SINE MIR -103 165 11 3 853 352 257 34 48 chr11 35222247 35222394 -86621462 + B1F SINE Alu 4 148 -1 3 853 243 333 25 0 chr11 35222418 35222499 -86621357 + ID4_ SINE ID 1 83 0 3 853 724 211 104 55 chr11 35222519 35222720 -86621136 + B3 SINE B2 1 211 -5 3 853 705 246 134 17 chr11 35223252 35223484 -86620372 + MER44A DNA MER2_type 81 339 0 3 853 234 0 0 0 chr11 35223860 35223886 -86619970 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 3 853 1979 149 144 3 chr11 35224499 35224868 -86618988 + MTC LTR MaLR 1 421 0 3 853 611 277 77 12 chr11 35225544 35225712 -86618144 - B3A SINE B2 -15 183 5 3 853 879 124 0 46 chr11 35227099 35227251 -86616605 - B1_Mur4 SINE Alu -1 149 5 3 853 258 286 75 80 chr11 35227263 35227476 -86616380 - L1MA6 LINE L1 -3 6297 6086 3 853 320 305 65 60 chr11 35227489 35227705 -86616151 - Charlie10 DNA MER1_type -65 2757 2541 3 853 334 251 48 60 chr11 35227697 35227818 -86616038 - Charlie10 DNA MER1_type -2669 153 35 3 853 25 0 0 0 chr11 35228737 35228762 -86615094 + AT_rich Low_complexity Low_complexity 1 25 0 3 853 323 305 21 0 chr11 35228796 35228891 -86614965 - ID_B1 SINE B4 -58 166 70 3 853 249 274 77 19 chr11 35233846 35233950 -86609906 + LTR85a LTR Gypsy? 217 326 -376 3 853 750 238 36 36 chr11 35233971 35233987 -86609869 - B3A SINE B2 0 198 182 3 853 354 23 0 0 chr11 35233987 35234030 -86609826 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 853 750 238 36 36 chr11 35234030 35234205 -86609651 - B3A SINE B2 -17 181 7 3 853 344 278 16 0 chr11 35234326 35234452 -86609404 + (TG)n Simple_repeat Simple_repeat 2 129 0 3 853 336 281 0 24 chr11 35235610 35235694 -86608162 - ID4 SINE ID -1 82 1 3 853 242 301 75 11 chr11 35236271 35236365 -86607491 + Charlie15a DNA MER1_type 95 194 -30 3 853 286 311 11 11 chr11 35236587 35236678 -86607178 + MER82 DNA MER2_type 2 92 -561 3 853 339 360 34 53 chr11 35236893 35237101 -86606755 + MER82 DNA MER2_type 449 652 -1 3 853 491 0 0 17 chr11 35238793 35238853 -86605003 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 3 853 354 352 53 34 chr11 35238857 35239063 -86604793 - RMER15 LTR ERVL -86 489 280 3 853 1428 84 26 5 chr11 35239281 35239472 -86604384 + B2_Mm2 SINE B2 1 195 0 3 853 254 137 20 0 chr11 35239472 35239505 -86604351 + polypurine Low_complexity Low_complexity 4 37 0 3 853 609 14 0 0 chr11 35239505 35239575 -86604281 + (GGGAA)n Simple_repeat Simple_repeat 1 70 0 3 853 254 137 20 0 chr11 35239575 35239592 -86604264 + polypurine Low_complexity Low_complexity 38 54 0 3 853 519 309 85 23 chr11 35239607 35239912 -86603944 + L1MB8 LINE L1 5649 5972 -206 3 853 8220 43 0 0 chr11 35239977 35241121 -86602735 - L1Md_T LINE L1 0 6582 5439 3 853 230 320 60 20 chr11 35241139 35241289 -86602567 + L1MB8 LINE L1 6027 6182 -2 3 853 688 179 22 0 chr11 35241908 35242042 -86601814 - URR1A DNA MER1_type -7 219 83 3 853 442 211 16 8 chr11 35242577 35242701 -86601155 + (TATATG)n Simple_repeat Simple_repeat 1 125 0 3 853 468 123 0 0 chr11 35242700 35242773 -86601083 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 853 456 246 149 30 chr11 35242986 35243120 -86600736 - RSINE1 SINE B4 -4 161 12 3 853 265 302 135 30 chr11 35245190 35245376 -86598480 - MIR SINE MIR -54 222 17 3 853 813 182 7 20 chr11 35246161 35246312 -86597544 + B1_Mur3 SINE Alu 1 149 0 3 853 252 220 0 0 chr11 35246361 35246411 -86597445 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 3 853 378 0 0 0 chr11 35246757 35246799 -86597057 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 853 209 33 33 0 chr11 35249495 35249525 -86594331 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 853 185 0 40 0 chr11 35249708 35249733 -86594123 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 853 213 344 43 0 chr11 35249934 35250027 -86593829 - MIRm SINE MIR -27 249 153 3 853 336 329 24 53 chr11 35250040 35250210 -86593646 - MER58A DNA MER1_type -12 212 48 3 853 355 263 119 0 chr11 35250264 35250382 -86593474 + B1F SINE Alu 1 132 -17 3 853 794 299 78 12 chr11 35250404 35250661 -86593195 + B4A SINE B4 1 274 -18 3 853 230 342 43 26 chr11 35251578 35251695 -86592161 - MER102c DNA MER1_type -161 170 52 3 853 233 278 55 14 chr11 35251823 35251896 -86591960 + MIRb SINE MIR 36 111 -157 3 853 371 343 76 43 chr11 35252673 35252883 -86590973 + MIR SINE MIR 33 249 -13 3 853 1446 124 36 22 chr11 35253112 35253334 -86590522 + URR1B DNA MER1_type 1 225 0 3 853 315 333 15 52 chr11 35253368 35253504 -86590352 - L2b LINE L2 -3 3372 3242 3 853 339 342 97 0 chr11 35253560 35253715 -86590141 + MIR SINE MIR 15 184 -78 3 853 299 345 21 7 chr11 35254280 35254420 -86589436 - MIR3 SINE MIR -58 150 9 3 853 380 262 40 24 chr11 35254453 35254578 -86589278 + MER117 DNA MER1_type 18 144 -53 3 853 203 229 0 0 chr11 35254815 35254850 -86589006 + C-rich Low_complexity Low_complexity 1 35 0 3 853 1122 278 87 26 chr11 35254909 35255300 -86588556 + MTD LTR MaLR 4 418 -1 3 853 415 255 90 84 chr11 35255344 35255511 -86588345 + MIRb SINE MIR 81 248 -14 3 853 449 294 60 64 chr11 35255604 35255837 -86588019 + Tigger14a DNA MER2_type 80 311 -13 3 853 758 281 10 19 chr11 35255834 35256041 -86587815 + B4 SINE B4 86 290 -2 3 853 360 0 0 0 chr11 35256091 35256131 -86587725 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 853 257 321 90 84 chr11 35256194 35256428 -86587428 - MIRm SINE MIR -42 234 6 3 853 320 165 0 93 chr11 35256428 35256535 -86587321 + C-rich Low_complexity Low_complexity 1 97 0 3 853 312 273 22 22 chr11 35256724 35256814 -86587042 + MER5A1 DNA MER1_type 31 120 -46 3 853 1027 132 141 10 chr11 35257342 35257541 -86586315 + URR1A DNA MER1_type 2 226 0 3 106 270 331 95 40 chr11 35258282 35258430 -86585426 + RSINE1 SINE B4 2 157 -8 3 854 245 310 33 33 chr11 35260217 35260307 -86583549 - MIRb SINE MIR -53 215 126 3 854 777 285 97 81 chr11 35260549 35260984 -86582872 + MER31A LTR ERV1 25 466 -19 3 854 221 87 0 80 chr11 35260992 35261042 -86582814 + (CACCC)n Simple_repeat Simple_repeat 2 47 0 3 854 265 265 135 19 chr11 35262831 35262935 -86580921 - MamRep137 DNA TcMar? 0 444 329 3 854 1101 316 27 30 chr11 35263216 35263582 -86580274 - MLT1A0 LTR MaLR 0 365 1 3 854 181 288 33 17 chr11 35264076 35264136 -86579720 - MER5A DNA MER1_type -48 141 81 3 854 366 333 109 36 chr11 35268491 35268712 -86575144 - MIRc SINE MIR -8 260 24 3 854 1225 107 114 25 chr11 35268716 35268918 -86574938 + URR1A DNA MER1_type 1 220 -6 3 854 253 299 56 56 chr11 35269718 35269934 -86573922 - RMER17C LTR ERVK -42 368 153 3 854 232 217 129 24 chr11 35270264 35270349 -86573507 - MLT1K LTR MaLR -5 590 497 3 854 250 264 28 0 chr11 35270449 35270521 -86573335 - ORR1D2 LTR MaLR 0 379 306 3 854 231 281 15 15 chr11 35270522 35270587 -86573269 + ID4_ SINE ID 1 65 -18 3 854 253 324 58 109 chr11 35270612 35270712 -86573144 - ORR1D2 LTR MaLR -69 301 214 3 854 2586 80 3 0 chr11 35270712 35271038 -86572818 - ORR1A2 LTR MaLR 0 327 1 3 854 253 324 58 109 chr11 35271038 35271211 -86572645 - ORR1D2 LTR MaLR -157 213 42 3 854 463 281 70 25 chr11 35271231 35271388 -86572468 - MLT1K LTR MaLR -294 301 138 3 854 462 171 22 54 chr11 35271887 35272072 -86571784 + CT-rich Low_complexity Low_complexity 2 180 0 3 854 180 77 0 0 chr11 35272078 35272104 -86571752 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 3 854 267 103 0 0 chr11 35272995 35273034 -86570822 + (T)n Simple_repeat Simple_repeat 1 39 0 3 854 437 325 119 5 chr11 35273517 35273727 -86570129 + MIRb SINE MIR 27 260 -8 3 854 789 11 0 0 chr11 35275770 35275860 -86567996 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 854 366 23 0 0 chr11 35277415 35277458 -86566398 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 854 993 226 170 17 chr11 35278443 35278673 -86565183 - B4 SINE B4 0 292 28 3 854 285 310 88 144 chr11 35278774 35279196 -86564660 + RMER10A LTR ERVL 18 415 -27 4 854 823 267 119 61 chr11 35280547 35280890 -86562966 + MTEa LTR MaLR 13 375 -4 4 854 387 113 0 0 chr11 35281767 35281829 -86562027 + (CGTG)n Simple_repeat Simple_repeat 2 63 0 4 854 1393 309 65 9 chr11 35281829 35282397 -86561459 - L1MB2 LINE L1 -264 5907 5308 4 854 184 240 20 20 chr11 35283111 35283162 -86560694 + MIRc SINE MIR 21 71 -197 4 854 350 354 77 48 chr11 35284465 35284673 -86559183 - MER58A DNA MER1_type -5 219 6 4 854 244 267 128 0 chr11 35285779 35285865 -86557991 + MIRb SINE MIR 101 197 -71 4 854 369 0 0 0 chr11 35287111 35287152 -86556704 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 854 183 213 0 60 chr11 35288136 35288186 -86555670 + L4 LINE RTE 1689 1735 -294 4 854 37 23 0 0 chr11 35288660 35288704 -86555152 + AT_rich Low_complexity Low_complexity 1 44 0 4 854 793 288 67 17 chr11 35288755 35289055 -86554801 - Lx8 LINE L1 -2 7471 7157 4 854 684 67 0 0 chr11 35290366 35290456 -86553400 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 4 854 256 337 0 12 chr11 35290985 35291069 -86552787 + GA-rich Low_complexity Low_complexity 5 87 0 4 854 414 0 0 0 chr11 35291227 35291273 -86552583 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 854 229 284 13 39 chr11 35292040 35292117 -86551739 + Charlie5 DNA MER1_type 2358 2432 -192 4 854 356 97 0 70 chr11 35292122 35292222 -86551634 + GA-rich Low_complexity Low_complexity 1 93 0 4 854 775 191 109 27 chr11 35292326 35292509 -86551347 + B3A SINE B2 1 198 0 4 854 230 287 17 85 chr11 35292561 35292679 -86551177 + Charlie5 DNA MER1_type 2510 2619 -5 4 854 375 330 43 48 chr11 35293035 35293298 -86550558 - L1MC5 LINE L1 -793 7249 7001 4 854 238 307 35 98 chr11 35293586 35293768 -86550088 - MIRm SINE MIR -94 182 11 4 854 231 273 43 43 chr11 35294034 35294126 -86549730 + L1MC LINE L1 5579 5670 -2212 4 854 369 252 123 22 chr11 35295488 35295626 -86548230 + L1MA6 LINE L1 6113 6264 -36 4 854 378 0 0 0 chr11 35295853 35295895 -86547961 + (GCTG)n Simple_repeat Simple_repeat 2 43 0 4 854 315 0 0 0 chr11 35297164 35297199 -86546657 + (A)n Simple_repeat Simple_repeat 1 35 0 4 854 259 156 203 0 chr11 35297386 35297450 -86546406 - Charlie8 DNA MER1_type 0 2428 2352 4 854 270 302 72 162 chr11 35297449 35297726 -86546130 - Charlie8 DNA MER1_type -2092 336 85 4 854 1550 48 5 0 chr11 35299031 35299218 -86544638 + B2_Mm1t SINE B2 2 189 -4 4 854 291 54 0 0 chr11 35299269 35299306 -86544550 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 854 186 133 0 0 chr11 35299849 35299879 -86543977 + (CGGT)n Simple_repeat Simple_repeat 3 32 0 4 854 649 328 17 34 chr11 35300806 35301103 -86542753 + B4A SINE B4 1 292 0 4 854 1141 88 0 0 chr11 35301810 35301958 -86541898 + B1_Mus1 SINE Alu 1 148 0 4 854 198 103 0 0 chr11 35301976 35302005 -86541851 + (GGA)n Simple_repeat Simple_repeat 3 31 0 4 854 498 222 74 0 chr11 35302922 35303030 -86540826 + PB1D10 SINE Alu 1 116 -1 4 854 308 330 124 0 chr11 35303056 35303153 -86540703 - MER5A DNA MER1_type -80 109 1 4 854 789 200 68 5 chr11 35303481 35303672 -86540184 + L1MA5 LINE L1 6088 6290 -10 4 854 395 83 17 0 chr11 35304668 35304728 -86539128 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 854 298 282 6 49 chr11 35306122 35306305 -86537551 + (TCTCTG)n Simple_repeat Simple_repeat 2 176 0 4 854 238 199 95 50 chr11 35307203 35307289 -86536567 - MTEb LTR MaLR -14 405 311 4 854 275 153 58 0 chr11 35307703 35307771 -86536085 - MIRm SINE MIR -93 183 103 4 854 23 0 0 0 chr11 35308094 35308117 -86535739 + AT_rich Low_complexity Low_complexity 1 23 0 4 854 1277 130 83 37 chr11 35311221 35311437 -86532419 - URR1A DNA MER1_type 0 226 1 4 854 447 236 185 20 chr11 35312102 35312253 -86531603 + MER33 DNA MER1_type 26 201 -123 4 854 210 341 83 88 chr11 35312291 35312349 -86531507 - B3A SINE B2 -5 193 2 4 854 662 252 30 0 chr11 35312349 35312484 -86531372 - RSINE1 SINE B4 -24 141 3 4 854 251 348 0 11 chr11 35312484 35312577 -86531279 + MER33 DNA MER1_type 233 324 0 4 854 486 0 0 0 chr11 35313300 35313354 -86530502 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 854 181 275 0 38 chr11 35313743 35313796 -86530060 - MER5A DNA MER1_type -75 114 64 4 854 267 313 130 10 chr11 35314454 35314554 -86529302 + L2b LINE L2 3259 3370 -5 4 854 531 0 0 0 chr11 35314774 35314833 -86529023 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 854 285 312 84 74 chr11 35315908 35316123 -86527733 + LTR16A1 LTR ERVL 146 362 -94 4 854 3099 198 103 62 chr11 35316232 35316475 -86527381 - Lx7 LINE L1 0 7696 7478 4 854 207 69 0 0 chr11 35316475 35316504 -86527352 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 854 3099 198 103 62 chr11 35316504 35317117 -86526739 - Lx7 LINE L1 -219 7477 6805 4 854 207 0 0 0 chr11 35318254 35318277 -86525579 + (A)n Simple_repeat Simple_repeat 1 23 0 4 854 22 0 0 0 chr11 35318779 35318801 -86525055 + AT_rich Low_complexity Low_complexity 1 22 0 4 854 695 292 6 36 chr11 35320224 35320391 -86523465 - RSINE1 SINE B4 -1 164 3 4 854 213 39 0 0 chr11 35321511 35321537 -86522319 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 4 854 206 121 0 29 chr11 35322050 35322084 -86521772 + GA-rich Low_complexity Low_complexity 4 36 0 4 854 277 43 43 0 chr11 35322782 35322829 -86521027 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 854 275 289 12 0 chr11 35323751 35323834 -86520022 - MER46C DNA MER2_type -1 337 254 4 854 184 30 0 57 chr11 35323944 35323979 -86519877 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 854 502 306 54 27 chr11 35324414 35324636 -86519220 + MIRb SINE MIR 7 234 -34 4 854 297 0 0 0 chr11 35325180 35325213 -86518643 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 854 276 254 14 0 chr11 35325562 35325633 -86518223 + ID4 SINE ID 1 72 -11 4 854 202 274 106 12 chr11 35326668 35326753 -86517103 - L2c LINE L2 -2 3424 3332 4 854 321 89 0 0 chr11 35327310 35327355 -86516501 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 854 257 339 136 12 chr11 35327361 35327603 -86516253 + L2a LINE L2 2985 3256 -170 4 854 1236 234 161 9 chr11 35327948 35328297 -86515559 + MTD LTR MaLR 18 419 0 4 854 212 318 136 40 chr11 35328330 35328531 -86515325 - L2c LINE L2 -216 3171 2932 4 854 216 0 0 0 chr11 35328972 35328996 -86514860 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 4 854 350 195 12 0 chr11 35328997 35329079 -86514777 + CT-rich Low_complexity Low_complexity 2 84 0 4 854 198 263 0 0 chr11 35329102 35329197 -86514659 + CT-rich Low_complexity Low_complexity 2 96 0 4 854 316 297 124 48 chr11 35329215 35329360 -86514496 - HAL1-3A_ME LINE L1 -421 2437 2282 4 854 208 325 87 37 chr11 35329731 35329882 -86513974 + L2a LINE L2 3209 3426 0 4 854 318 179 21 10 chr11 35330924 35331020 -86512836 + (TTAA)n Simple_repeat Simple_repeat 1 97 0 4 854 307 320 154 13 chr11 35331134 35331283 -86512573 - L1MC1 LINE L1 -184 6149 5980 4 854 1494 33 0 0 chr11 35331346 35331617 -86512239 + (CA)n Simple_repeat Simple_repeat 1 271 0 4 854 633 155 0 0 chr11 35332290 35332419 -86511437 + (CA)n Simple_repeat Simple_repeat 2 130 0 4 854 437 290 78 54 chr11 35332439 35332747 -86511109 + MLT1D LTR MaLR 78 456 -49 4 854 381 321 88 15 chr11 35334234 35334370 -86509486 - MIRb SINE MIR -72 196 51 4 854 339 85 0 0 chr11 35334552 35334599 -86509257 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 854 341 247 55 0 chr11 35335288 35335361 -86508495 - ID SINE ID -142 82 6 4 854 458 143 38 0 chr11 35335438 35335543 -86508313 + GA-rich Low_complexity Low_complexity 2 110 0 4 854 480 281 16 0 chr11 35336282 35336410 -86507446 - ID_B1 SINE B4 0 224 95 4 854 479 130 28 0 chr11 35337088 35337275 -86506581 + (CA)n Simple_repeat Simple_repeat 1 192 0 4 854 314 170 0 19 chr11 35337277 35337331 -86506525 + HAL1-3A_ME LINE L1 1975 2027 -831 4 854 284 308 250 0 chr11 35337838 35337942 -86505914 + ID_B1 SINE B4 79 208 -16 4 854 366 326 6 0 chr11 35337850 35337953 -86505903 + B1F1 SINE Alu 10 116 -34 4 854 244 324 99 0 chr11 35338213 35338324 -86505532 + MER2 DNA MER2_type 82 203 -142 4 854 430 293 47 18 chr11 35338477 35338647 -86505209 - L1M5 LINE L1 -346 5818 5644 4 854 472 290 127 9 chr11 35339355 35339567 -86504289 + MER2 DNA MER2_type 80 316 -29 4 854 368 88 0 17 chr11 35340225 35340283 -86503573 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 4 854 292 328 0 0 chr11 35341143 35341210 -86502646 + ID4 SINE ID 1 67 -16 4 854 471 18 0 0 chr11 35341216 35341272 -86502584 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 854 796 305 90 63 chr11 35341718 35342208 -86501648 - MER74B LTR ERVL -50 572 70 4 854 226 50 24 24 chr11 35345383 35345424 -86498432 + (GTTTG)n Simple_repeat Simple_repeat 3 43 0 4 854 393 22 0 0 chr11 35345518 35345564 -86498292 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 854 1000 108 0 14 chr11 35345841 35345982 -86497874 + B1_Mus1 SINE Alu 2 140 -8 4 854 482 277 59 0 chr11 35346881 35347000 -86496856 + RSINE1 SINE B4 4 129 -36 4 854 867 87 0 0 chr11 35347004 35347130 -86496726 + (CA)n Simple_repeat Simple_repeat 2 127 0 4 854 838 138 27 33 chr11 35347152 35347302 -86496554 + B1_Mur3 SINE Alu 1 149 0 4 854 632 321 124 21 chr11 35347364 35347832 -86496024 - L1MB5 LINE L1 -67 6107 5592 4 854 206 111 56 0 chr11 35347835 35347871 -86495985 + CT-rich Low_complexity Low_complexity 3 40 0 4 854 255 329 21 14 chr11 35347871 35348013 -86495843 - L1MB5 LINE L1 -582 5598 5456 4 854 461 269 90 15 chr11 35349611 35349811 -86494045 + B3 SINE B2 2 216 0 4 854 245 271 176 66 chr11 35351549 35351640 -86492216 - MER81 DNA AcHobo -12 102 2 4 854 21 0 0 0 chr11 35352910 35352931 -86490925 + AT_rich Low_complexity Low_complexity 1 21 0 4 854 492 18 0 0 chr11 35353548 35353605 -86490251 + (CTG)n Simple_repeat Simple_repeat 1 57 0 5 854 219 69 0 0 chr11 35353980 35354009 -86489847 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 854 216 0 0 0 chr11 35354015 35354039 -86489817 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 854 189 107 0 0 chr11 35354490 35354518 -86489338 + (A)n Simple_repeat Simple_repeat 1 28 0 5 854 507 267 0 49 chr11 35355185 35355307 -86488549 + RSINE1 SINE B4 11 126 -39 5 854 208 0 62 0 chr11 35356284 35356316 -86487540 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 5 854 183 80 0 0 chr11 35358343 35358368 -86485488 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 854 441 0 0 0 chr11 35358932 35358981 -86484875 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 854 404 275 69 42 chr11 35359159 35359303 -86484553 + MIR3 SINE MIR 5 152 -56 5 854 21 0 0 0 chr11 35359417 35359438 -86484418 + AT_rich Low_complexity Low_complexity 1 21 0 5 854 279 0 0 0 chr11 35362057 35362088 -86481768 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 854 480 18 0 0 chr11 35362088 35362144 -86481712 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 854 1115 253 32 14 chr11 35362532 35362817 -86481039 + B4 SINE B4 1 290 -2 5 854 315 0 0 0 chr11 35362962 35362997 -86480859 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 854 195 282 92 66 chr11 35363308 35363384 -86480472 - MIRm SINE MIR -174 102 25 5 854 378 0 0 0 chr11 35363397 35363439 -86480417 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 854 337 374 105 6 chr11 35363459 35363631 -86480225 + MER102b DNA MER1_type 100 288 -53 5 854 25 0 0 0 chr11 35365711 35365736 -86478120 + AT_rich Low_complexity Low_complexity 1 25 0 5 854 198 0 0 0 chr11 35365939 35365961 -86477895 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 5 854 341 311 52 22 chr11 35366035 35366170 -86477686 + B1F SINE Alu 1 139 -10 5 854 274 337 91 54 chr11 35367139 35367339 -86476517 - MIR3 SINE MIR -3 205 1 5 854 792 145 0 0 chr11 35368108 35368267 -86475589 + (TG)n Simple_repeat Simple_repeat 2 160 0 5 854 309 282 98 98 chr11 35368305 35368478 -86475378 + MER102b DNA MER1_type 11 183 -158 5 854 1116 203 38 19 chr11 35368769 35368980 -86474876 + B3 SINE B2 2 216 0 5 854 579 202 0 9 chr11 35372324 35372434 -86471422 + PB1D10 SINE Alu 1 109 -8 5 854 206 313 183 0 chr11 35372568 35372683 -86471173 - MER5A DNA MER1_type -52 137 2 5 854 22 35 0 0 chr11 35373275 35373304 -86470552 + AT_rich Low_complexity Low_complexity 1 29 0 5 854 384 22 0 0 chr11 35373331 35373376 -86470480 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 854 318 359 52 22 chr11 35373377 35373511 -86470345 - B3 SINE B2 -13 203 66 5 854 708 243 129 5 chr11 35373867 35374053 -86469803 + B3 SINE B2 5 213 -3 5 854 210 91 0 0 chr11 35374538 35374571 -86469285 + (CCCTAA)n Simple_repeat Simple_repeat 6 38 0 5 854 270 286 121 0 chr11 35374999 35375090 -86468766 + MLT1D LTR MaLR 397 498 -7 5 854 251 296 188 27 chr11 35375284 35375433 -86468423 - MIRb SINE MIR -93 175 3 5 854 333 62 0 0 chr11 35376268 35376316 -86467540 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 854 325 285 70 38 chr11 35377698 35377884 -86465972 + B2_Mm2 SINE B2 1 192 -3 5 854 597 28 0 0 chr11 35378232 35378303 -86465553 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 854 285 317 40 16 chr11 35379264 35379389 -86464467 + MER5A DNA MER1_type 7 134 -55 5 854 216 302 110 8 chr11 35380891 35380991 -86462865 - MIR SINE MIR -113 163 57 5 854 261 0 0 0 chr11 35383890 35383919 -86459937 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 854 207 100 0 0 chr11 35384035 35384065 -86459791 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 854 529 257 227 9 chr11 35385141 35385433 -86458423 - MTD LTR MaLR 0 419 21 5 854 284 0 28 0 chr11 35385433 35385469 -86458387 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 854 310 293 10 0 chr11 35385469 35385487 -86458369 - MTD LTR MaLR -385 22 4 5 854 207 0 0 0 chr11 35387791 35387814 -86456042 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 5 855 271 260 39 59 chr11 35389711 35389813 -86454043 - L2a LINE L2 -22 3404 3305 5 855 261 0 0 0 chr11 35390718 35390747 -86453109 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 855 231 139 0 44 chr11 35390747 35390792 -86453064 - MIRm SINE MIR -127 149 107 5 855 414 356 77 24 chr11 35392791 35392998 -86450858 + MER58A DNA MER1_type 6 223 -1 5 855 257 367 69 23 chr11 35393001 35393174 -86450682 + MIR SINE MIR 33 213 -49 5 855 450 204 213 12 chr11 35393915 35394079 -86449777 - L2 LINE L2 -371 3048 2852 5 855 210 314 71 31 chr11 35395035 35395153 -86448703 + MIRm SINE MIR 65 187 -89 5 855 327 49 0 0 chr11 35396813 35396854 -86447002 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 5 855 1459 57 17 0 chr11 35396866 35397043 -86446813 - B2_Mm2 SINE B2 -14 181 2 5 855 225 294 71 0 chr11 35397086 35397171 -86446685 + MIRb SINE MIR 140 230 -38 5 855 776 315 5 27 chr11 35397724 35397946 -86445910 + B4A SINE B4 76 292 0 5 855 186 341 42 52 chr11 35398053 35398149 -86445707 + MIR3 SINE MIR 13 107 -101 5 855 290 248 95 40 chr11 35398940 35399066 -86444790 + MIR SINE MIR 2 134 -128 5 855 480 281 18 0 chr11 35399075 35399189 -86444667 + PB1D10 SINE Alu 2 117 0 5 855 535 240 217 25 chr11 35399642 35399917 -86443939 - MER2 DNA MER2_type -14 331 4 5 855 212 375 86 15 chr11 35400088 35400299 -86443557 + MIR SINE MIR 31 268 0 5 855 261 0 0 0 chr11 35401344 35401373 -86442483 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 5 855 455 90 0 13 chr11 35401374 35401453 -86442403 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 855 369 0 0 0 chr11 35401453 35401494 -86442362 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 855 1190 51 0 0 chr11 35402692 35402829 -86441027 + B1_Mus2 SINE Alu 1 137 -10 5 855 212 0 36 0 chr11 35402829 35402857 -86440999 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 855 223 318 95 114 chr11 35403064 35403380 -86440476 - L2a LINE L2 0 3426 3117 5 855 349 291 55 0 chr11 35404942 35405052 -86438804 + PB1D10 SINE Alu 1 116 -1 5 855 819 192 91 21 chr11 35405624 35405810 -86438046 + B3 SINE B2 5 203 -13 5 855 994 280 104 21 chr11 35405814 35406102 -86437754 - MTEa LTR MaLR -67 312 1 5 855 713 271 65 32 chr11 35406123 35406432 -86437424 + L1MA8 LINE L1 5948 6266 -25 5 855 203 222 47 16 chr11 35407934 35407998 -86435858 + T-rich Low_complexity Low_complexity 4 69 0 5 855 468 143 124 0 chr11 35408040 35408145 -86435711 - PB1D7 SINE Alu 0 120 3 5 855 180 0 0 0 chr11 35409069 35409089 -86434767 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 855 187 344 16 0 chr11 35409266 35409327 -86434529 - MIR SINE MIR 0 262 201 5 855 185 294 0 0 chr11 35409394 35409445 -86434411 + L2a LINE L2 3342 3392 -34 5 855 772 294 44 28 chr11 35409471 35409723 -86434133 + B4A SINE B4 29 284 -8 5 855 1011 234 5 23 chr11 35410791 35411010 -86432846 + B3 SINE B2 1 215 -1 5 855 1328 54 0 0 chr11 35411847 35412013 -86431843 - L1Md_T LINE L1 -2 6580 6415 5 855 243 0 0 0 chr11 35412099 35412126 -86431730 + (A)n Simple_repeat Simple_repeat 1 27 0 5 855 285 29 0 0 chr11 35412674 35412708 -86431148 + (GGCTG)n Simple_repeat Simple_repeat 4 37 0 5 855 1092 106 0 0 chr11 35413555 35413716 -86430140 + (GGAA)n Simple_repeat Simple_repeat 4 164 0 5 855 1086 104 0 0 chr11 35413800 35413963 -86429893 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 855 225 196 40 80 chr11 35413992 35414092 -86429764 - MIR SINE MIR -148 114 19 5 855 227 345 48 0 chr11 35414165 35414249 -86429607 + PB1D10 SINE Alu 1 88 -29 5 855 870 62 0 0 chr11 35414648 35414761 -86429095 + (GA)n Simple_repeat Simple_repeat 1 113 0 5 855 369 109 0 0 chr11 35416099 35416154 -86427702 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 855 519 262 68 37 chr11 35416979 35417169 -86426687 - MIRb SINE MIR -10 258 63 5 855 414 0 0 0 chr11 35420040 35420086 -86423770 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 855 252 238 62 12 chr11 35420129 35420210 -86423646 + MIR3 SINE MIR 81 165 -43 5 855 268 191 0 0 chr11 35420684 35420731 -86423125 + MER46C DNA MER2_type 282 328 -10 5 855 873 179 0 0 chr11 35421799 35421933 -86421923 + B1_Mus2 SINE Alu 3 136 -11 5 855 253 338 137 7 chr11 35422254 35422400 -86421456 + MIRc SINE MIR 90 254 -14 5 855 459 63 0 0 chr11 35423447 35423510 -86420346 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 855 261 324 0 0 chr11 35423524 35423592 -86420264 + Charlie24 DNA MER1_type 2369 2436 -14 5 855 272 221 192 40 chr11 35424429 35424528 -86419328 - MIR SINE MIR -72 190 77 5 855 1004 115 0 0 chr11 35424541 35424680 -86419176 + B2_Mm2 SINE B2 1 139 -56 5 855 750 53 0 0 chr11 35424681 35424776 -86419080 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 5 855 805 74 25 0 chr11 35427606 35427727 -86416129 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 5 855 207 139 0 0 chr11 35428409 35428445 -86415411 + (GAA)n Simple_repeat Simple_repeat 2 37 0 5 855 195 163 245 0 chr11 35428499 35428548 -86415308 - MIR3 SINE MIR -32 176 116 5 855 189 0 0 0 chr11 35428737 35428758 -86415098 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 855 437 110 14 0 chr11 35428758 35428830 -86415026 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 855 478 286 86 0 chr11 35428834 35428974 -86414882 - RSINE1 SINE B4 -10 155 4 6 855 225 94 0 0 chr11 35430440 35430472 -86413384 + (CCA)n Simple_repeat Simple_repeat 2 33 0 6 855 252 296 51 4 chr11 35431340 35431434 -86412422 - MIR SINE MIR -110 166 64 6 855 24 32 0 0 chr11 35432365 35432396 -86411460 + AT_rich Low_complexity Low_complexity 1 31 0 6 855 240 35 0 0 chr11 35434644 35434673 -86409183 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 855 183 80 0 0 chr11 35435388 35435413 -86408443 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 855 194 339 0 17 chr11 35435796 35435856 -86408000 - L2a LINE L2 -1 3425 3367 6 855 21 36 0 0 chr11 35435914 35435942 -86407914 + AT_rich Low_complexity Low_complexity 1 28 0 6 855 721 261 25 6 chr11 35436037 35436199 -86407657 + 7SK RNA RNA 2 166 -165 6 855 270 375 0 43 chr11 35437650 35437767 -86406089 - MIRb SINE MIR -142 126 15 6 855 1612 320 74 35 chr11 35437918 35438537 -86405319 - MER82 DNA MER2_type -10 643 1 6 855 351 339 66 59 chr11 35439830 35440103 -86403753 + MER102a DNA MER1_type 41 315 -15 6 855 1262 254 19 4 chr11 35441918 35442183 -86401673 + B4A SINE B4 1 269 -23 6 855 297 0 0 0 chr11 35442187 35442220 -86401636 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 855 1762 78 9 0 chr11 35442322 35442553 -86401303 - L1_Mus1 LINE L1 0 6567 6335 6 855 909 36 0 0 chr11 35442553 35442665 -86401191 + L1Md_F2 LINE L1 6226 6337 -245 6 855 334 310 88 20 chr11 35442679 35442827 -86401029 + MIR SINE MIR 39 196 -66 6 855 2140 166 18 34 chr11 35443797 35444177 -86399679 - ORR1D1 LTR MaLR 0 374 1 6 855 217 343 15 15 chr11 35444601 35444669 -86399187 - L2a LINE L2 -5 3421 3354 6 855 240 311 69 83 chr11 35446582 35446726 -86397130 - MER91B DNA Tip100 -37 153 12 6 855 846 246 89 134 chr11 35448556 35448950 -86394906 - RMER20B LTR ERVK -28 599 224 6 855 691 303 183 41 chr11 35450219 35451001 -86392855 - Charlie1a DNA MER1_type -438 1017 125 6 855 623 274 57 77 chr11 35451050 35451244 -86392612 - B3A SINE B2 0 198 9 6 855 2524 155 5 56 chr11 35451259 35451703 -86392153 - MTC LTR MaLR 0 421 1 6 855 360 0 0 0 chr11 35452195 35452235 -86391621 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 855 197 267 9 0 chr11 35452239 35452344 -86391512 + (TA)n Simple_repeat Simple_repeat 2 107 0 6 855 388 285 61 29 chr11 35452362 35452559 -86391297 - MIRb SINE MIR -28 234 31 6 855 415 286 7 29 chr11 35453450 35453587 -86390269 + MLT2C1 LTR ERVL 10 143 -254 6 855 208 171 24 0 chr11 35454104 35454145 -86389711 + L2a LINE L2 3367 3408 -18 6 855 186 43 0 0 chr11 35454156 35454179 -86389677 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 6 855 230 291 93 0 chr11 35454235 35454321 -86389535 + L2a LINE L2 3303 3396 -30 6 855 394 294 36 9 chr11 35454600 35454710 -86389146 + MER5A1 DNA MER1_type 54 166 0 6 855 29 0 0 0 chr11 35455196 35455225 -86388631 + GC_rich Low_complexity Low_complexity 1 29 0 6 855 3562 298 80 64 chr11 35455515 35457326 -86386530 - Lx8 LINE L1 -875 6598 4784 6 855 216 0 0 0 chr11 35457326 35457350 -86386506 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 6 855 3562 282 68 78 chr11 35457350 35458482 -86385374 - Lx8 LINE L1 -1097 4783 3620 6 855 256 261 101 0 chr11 35458495 35458564 -86385292 - RSINE1 SINE B4 -4 161 86 6 855 4184 47 0 0 chr11 35458566 35459055 -86384801 - L1_Mus1 LINE L1 0 6567 6079 6 855 3557 83 0 0 chr11 35459055 35459527 -86384329 + L1_Mm LINE L1 5296 5767 -116 6 855 2313 80 48 0 chr11 35459554 35459866 -86383990 + ORR1A2 LTR MaLR 1 327 0 6 855 199 357 54 0 chr11 35459883 35459995 -86383861 + L2a LINE L2 3309 3426 0 6 855 394 0 0 0 chr11 35460030 35460074 -86383782 + ORR1A3 LTR MaLR 283 326 0 6 855 376 208 26 0 chr11 35460081 35460158 -86383698 - RSINE1 SINE B4 -84 81 3 6 855 1223 307 74 12 chr11 35460160 35460198 -86383658 - L1_Mur3 LINE L1 -3040 3103 3065 6 855 255 61 0 0 chr11 35460198 35460231 -86383625 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 6 855 1479 286 46 30 chr11 35460231 35460763 -86383093 - L1_Mur3 LINE L1 -3079 3064 2481 6 855 340 236 30 44 chr11 35462103 35462203 -86381653 + MIRc SINE MIR 31 130 -146 6 855 267 302 40 78 chr11 35462230 35462377 -86381479 - L2a LINE L2 -31 3395 3244 6 855 721 294 59 0 chr11 35463349 35463553 -86380303 - MER20 DNA MER1_type -1 218 3 6 855 345 268 0 20 chr11 35463611 35463710 -86380146 + MER5B DNA MER1_type 67 163 -15 6 855 549 213 0 0 chr11 35463868 35463962 -86379894 + 4.5SRNA scRNA scRNA 1 94 0 6 855 777 159 43 7 chr11 35463963 35464102 -86379754 + B1_Mur4 SINE Alu 7 150 0 6 855 424 290 71 58 chr11 35463966 35464120 -86379736 + B4 SINE B4 94 249 -43 6 855 268 360 6 18 chr11 35464193 35464357 -86379499 + (TGAA)n Simple_repeat Simple_repeat 1 162 0 6 855 257 382 6 27 chr11 35464296 35464479 -86379377 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 6 855 278 330 0 21 chr11 35464432 35464525 -86379331 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 6 855 574 257 34 27 chr11 35465804 35465952 -86377904 + B1F1 SINE Alu 1 149 0 6 855 228 299 39 0 chr11 35466251 35466328 -86377528 + MIRb SINE MIR 188 267 -1 6 855 279 321 86 14 chr11 35466579 35466718 -86377138 - MIRc SINE MIR -60 208 60 6 855 473 127 0 14 chr11 35467483 35467555 -86376301 - Charlie26a DNA MER1_type 0 325 255 6 855 252 369 39 0 chr11 35467558 35467764 -86376092 + L1M5 LINE L1 5608 5821 -303 6 855 357 261 112 100 chr11 35468101 35468271 -86375585 - B4A SINE B4 -120 172 1 6 855 425 131 12 0 chr11 35468506 35468590 -86375266 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 855 238 292 14 20 chr11 35468620 35468681 -86375175 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 6 855 744 12 0 0 chr11 35468681 35468766 -86375090 + (TCTCCC)n Simple_repeat Simple_repeat 1 85 0 6 855 261 0 0 0 chr11 35468771 35468800 -86375056 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 855 238 292 14 20 chr11 35468800 35468879 -86374977 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 6 855 189 121 0 0 chr11 35468879 35468912 -86374944 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 6 855 198 103 0 0 chr11 35468913 35468942 -86374914 + (TATG)n Simple_repeat Simple_repeat 4 32 0 6 855 431 124 26 58 chr11 35468939 35469037 -86374819 + (TCTCTG)n Simple_repeat Simple_repeat 3 98 0 6 855 453 90 0 0 chr11 35469037 35469104 -86374752 + (TATG)n Simple_repeat Simple_repeat 4 70 0 6 855 431 124 26 58 chr11 35469104 35469159 -86374697 + (TCTCTG)n Simple_repeat Simple_repeat 5 56 0 6 855 846 56 0 0 chr11 35469175 35469283 -86374573 + (TG)n Simple_repeat Simple_repeat 2 109 0 6 855 232 309 69 74 chr11 35469608 35469797 -86374059 + MT-int LTR MaLR 517 704 -394 6 855 907 107 331 0 chr11 35470019 35470188 -86373668 - URR1B DNA MER1_type 0 225 1 6 855 234 0 0 0 chr11 35470386 35470412 -86373444 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 855 570 202 319 0 chr11 35470664 35470827 -86373029 - B3 SINE B2 -1 215 1 6 855 212 104 0 40 chr11 35470839 35470889 -86372967 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 6 855 1438 293 146 71 chr11 35471056 35471595 -86372261 - Lx8 LINE L1 -312 7161 6620 6 855 501 17 0 0 chr11 35471595 35471653 -86372203 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 855 1438 293 146 71 chr11 35471653 35472092 -86371764 - Lx8 LINE L1 -854 6619 6111 6 855 703 67 16 48 chr11 35472092 35472218 -86371638 - L1Md_F3 LINE L1 0 6584 6463 6 855 1438 293 146 71 chr11 35472218 35472270 -86371586 - Lx8 LINE L1 -1363 6110 6052 6 855 477 252 20 27 chr11 35472345 35472492 -86371364 - MIR SINE MIR -106 156 11 6 855 778 329 78 31 chr11 35473006 35473326 -86370530 - MER2 DNA MER2_type 0 345 11 6 855 360 0 0 0 chr11 35473457 35473497 -86370359 + (T)n Simple_repeat Simple_repeat 1 40 0 6 855 1210 61 0 0 chr11 35473497 35473645 -86370211 - B1_Mus1 SINE Alu 0 148 1 6 855 281 331 88 29 chr11 35473648 35473785 -86370071 - MIRb SINE MIR -50 218 74 6 855 252 0 0 0 chr11 35474630 35474658 -86369198 + (CAGGC)n Simple_repeat Simple_repeat 3 30 0 6 855 552 238 198 69 chr11 35474913 35475130 -86368726 - MER2 DNA MER2_type -100 245 1 6 855 27 29 0 0 chr11 35475248 35475282 -86368574 + AT_rich Low_complexity Low_complexity 1 34 0 6 855 707 281 32 25 chr11 35475292 35475449 -86368407 - RSINE1 SINE B4 0 165 8 6 855 25 83 0 0 chr11 35475541 35475601 -86368255 + AT_rich Low_complexity Low_complexity 1 60 0 6 855 213 179 193 18 chr11 35476408 35476465 -86367391 + MER5B DNA MER1_type 2 68 -110 6 855 342 0 0 0 chr11 35476851 35476889 -86366967 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 855 519 17 0 0 chr11 35476889 35476948 -86366908 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 855 190 0 0 62 chr11 35477928 35477960 -86365896 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 6 855 22 0 0 0 chr11 35479582 35479604 -86364252 + AT_rich Low_complexity Low_complexity 1 22 0 6 855 635 237 15 0 chr11 35479680 35479811 -86364045 - MER5A1 DNA MER1_type -33 133 1 6 855 293 284 12 0 chr11 35480515 35480596 -86363260 - MER46C DNA MER2_type -10 328 247 6 855 518 314 19 13 chr11 35480613 35480771 -86363085 + B4 SINE B4 48 206 -86 6 855 1444 140 56 283 chr11 35480854 35481353 -86362503 - ORR1B1 LTR MaLR -8 386 1 6 855 336 207 21 75 chr11 35481353 35481442 -86362414 + RSINE1 SINE B4 81 164 -1 6 855 445 297 42 88 chr11 35481812 35482074 -86361782 + MIRb SINE MIR 1 250 -18 6 855 186 229 72 0 chr11 35482769 35482841 -86361015 + L2c LINE L2 3032 3109 -278 7 855 222 281 136 61 chr11 35483114 35483332 -86360524 - MIRm SINE MIR -9 259 32 7 855 231 291 115 10 chr11 35483759 35483863 -86359993 - MIRb SINE MIR -114 154 40 7 855 205 294 79 44 chr11 35483997 35484111 -86359745 - MIRc SINE MIR -31 237 117 7 855 772 291 117 30 chr11 35484849 35485113 -86358743 - MLT1C LTR MaLR -4 463 175 7 855 1431 126 18 26 chr11 35485113 35485341 -86358515 + URR1A DNA MER1_type 1 226 0 7 855 772 291 117 30 chr11 35485341 35485502 -86358354 - MLT1C LTR MaLR -293 174 1 7 855 343 98 33 0 chr11 35485675 35485736 -86358120 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 7 855 207 0 0 0 chr11 35485761 35485784 -86358072 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 7 855 1272 225 78 120 chr11 35485885 35485974 -86357882 - RCHARR1 DNA MER1_type -3 971 891 7 855 738 216 85 55 chr11 35485974 35486175 -86357681 + B3 SINE B2 2 208 -8 7 855 1272 225 78 120 chr11 35486175 35486595 -86357261 - RCHARR1 DNA MER1_type -84 890 483 7 855 3076 263 102 13 chr11 35486604 35487551 -86356305 - Lx8 LINE L1 -2 7471 6440 7 855 1926 216 77 85 chr11 35487551 35488081 -86355775 - RCHARR1 DNA MER1_type -445 529 4 7 855 240 326 53 11 chr11 35489814 35489935 -86353921 - L2c LINE L2 -42 3384 3205 7 855 1088 182 36 5 chr11 35491231 35491424 -86352432 + B3 SINE B2 17 215 -1 7 855 4411 95 32 5 chr11 35491692 35491802 -86352054 - Lx LINE L1 -12 6642 6536 7 855 207 69 0 0 chr11 35491802 35491831 -86352025 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 7 855 4411 95 32 5 chr11 35491831 35492343 -86351513 - Lx LINE L1 -119 6535 6004 7 855 183 298 254 34 chr11 35492386 35492563 -86351293 + L2b LINE L2 3134 3349 -38 7 855 209 268 0 67 chr11 35492535 35492595 -86351261 + L2b LINE L2 3298 3353 -22 7 855 278 259 0 36 chr11 35493259 35493343 -86350513 + CT-rich Low_complexity Low_complexity 5 85 0 7 855 263 281 123 61 chr11 35493725 35493785 -86350071 - B3A SINE B2 -19 179 7 7 855 475 245 10 10 chr11 35493785 35493888 -86349968 - B4A SINE B4 -183 109 7 7 855 598 173 158 0 chr11 35495317 35495444 -86348412 - B1_Mur4 SINE Alu -1 149 3 7 855 292 256 129 32 chr11 35495361 35495454 -86348402 - MT2B LTR ERVL -345 256 155 7 855 266 312 0 0 chr11 35496031 35496095 -86347761 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 7 855 301 0 0 75 chr11 35496197 35496250 -86347606 + (TTC)n Simple_repeat Simple_repeat 2 50 0 7 855 870 183 0 0 chr11 35496250 35496419 -86347437 + CT-rich Low_complexity Low_complexity 3 171 0 7 855 888 158 203 28 chr11 35498374 35498556 -86345300 + B3 SINE B2 3 216 0 7 855 494 213 176 30 chr11 35498573 35498704 -86345152 + B1_Mur4 SINE Alu 1 150 0 7 855 649 226 90 6 chr11 35498719 35498875 -86344981 + B3A SINE B2 14 182 -16 7 855 22 0 0 0 chr11 35498883 35498905 -86344951 + AT_rich Low_complexity Low_complexity 1 22 0 7 855 455 319 52 8 chr11 35499040 35499290 -86344566 - L1MB2 LINE L1 -156 6015 5755 7 855 200 135 27 0 chr11 35499353 35499390 -86344466 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7 855 248 216 0 0 chr11 35499396 35499447 -86344409 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 855 622 207 48 32 chr11 35499447 35499572 -86344284 - RSINE1 SINE B4 -24 141 15 7 855 266 324 108 0 chr11 35501022 35501133 -86342723 - MER5B DNA MER1_type -29 149 27 1 855 309 51 0 0 chr11 35501326 35501365 -86342491 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 855 837 271 10 10 chr11 35501437 35501631 -86342225 - RMER30 DNA MER1_type -3 199 6 3 855 263 295 68 96 chr11 35501644 35501790 -86342066 + MER2 DNA MER2_type 146 287 -58 4 855 344 249 17 52 chr11 35502628 35502738 -86341118 - ORR1E LTR MaLR -4 374 258 5 855 386 311 95 41 chr11 35502757 35502978 -86340878 - ORR1E LTR MaLR -105 254 22 5 855 655 216 70 28 chr11 35503329 35503472 -86340384 + B1_Mur2 SINE Alu 1 149 0 6 855 252 309 0 29 chr11 35503489 35503559 -86340297 + ID4_ SINE ID 2 69 -14 7 855 390 100 0 0 chr11 35503562 35503622 -86340234 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 855 415 308 58 86 chr11 35503659 35503833 -86340023 + MER5A DNA MER1_type 1 169 -20 9 855 183 80 0 0 chr11 35503835 35503860 -86339996 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 1 855 561 196 31 0 chr11 35503860 35503957 -86339899 - B1_Mur1 SINE Alu -10 139 40 1 855 339 234 0 0 chr11 35503959 35504083 -86339773 + CT-rich Low_complexity Low_complexity 3 126 0 1 855 318 193 35 0 chr11 35504091 35504148 -86339708 - PB1D9 SINE Alu -61 59 1 1 855 265 299 69 40 chr11 35504148 35504184 -86339672 - ID_B1 SINE B4 -79 128 42 1 855 414 0 0 0 chr11 35504923 35504969 -86338887 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 855 457 95 0 0 chr11 35504969 35505032 -86338824 - B1_Mur4 SINE Alu -2 148 86 1 855 1297 259 50 33 chr11 35505034 35505458 -86338398 - BGLII_B LTR ERVK -10 431 1 1 855 589 146 31 0 chr11 35505458 35505551 -86338305 - B1_Mur4 SINE Alu -53 97 2 1 855 481 248 82 34 chr11 35507094 35507240 -86336616 + B3 SINE B2 32 184 -32 1 855 396 0 0 0 chr11 35507529 35507573 -86336283 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 855 284 331 121 55 chr11 35507695 35507951 -86335905 - B4 SINE B4 -18 274 2 2 855 516 283 68 0 chr11 35509435 35509631 -86334225 - B4 SINE B4 0 292 28 2 855 504 320 98 5 chr11 35510055 35510259 -86333597 + MIRb SINE MIR 23 245 -23 2 855 4528 41 0 4 chr11 35510443 35510984 -86332872 - L1Md_F2 LINE L1 -13 6569 6031 2 855 207 107 0 0 chr11 35512069 35512097 -86331759 - L2b LINE L2 -219 3156 3129 2 855 387 0 0 0 chr11 35512808 35512851 -86331005 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 855 873 238 44 19 chr11 35512851 35513037 -86330819 - ID_B1 SINE B4 -10 214 23 2 855 504 117 0 0 chr11 35513037 35513114 -86330742 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 855 873 238 44 19 chr11 35513114 35513133 -86330723 - ID SINE ID -202 22 4 2 855 305 267 0 0 chr11 35514370 35514430 -86329426 - MIRm SINE MIR 0 276 217 2 855 704 278 0 0 chr11 35514676 35514827 -86329029 + RSINE1 SINE B4 3 153 -12 2 855 914 205 108 0 chr11 35514877 35515072 -86328784 + B3 SINE B2 1 216 0 3 855 948 187 99 21 chr11 35515102 35515293 -86328563 + B3 SINE B2 9 214 -2 3 855 219 200 0 0 chr11 35515375 35515415 -86328441 + MIRb SINE MIR 205 244 -24 3 855 387 0 0 0 chr11 35515562 35515605 -86328251 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 855 490 248 63 16 chr11 35515828 35515955 -86327901 + RSINE1 SINE B4 4 136 -29 3 855 1234 48 0 7 chr11 35515989 35516137 -86327719 + B1_Mus1 SINE Alu 2 148 0 3 855 843 234 0 0 chr11 35516145 35516290 -86327566 + B1_Mur1 SINE Alu 2 146 -3 3 855 339 306 46 53 chr11 35516921 35517073 -86326783 - MLT1F LTR MaLR -395 153 3 3 855 566 175 41 66 chr11 35517167 35517289 -86326567 - B3 SINE B2 -60 156 38 3 855 2026 97 35 0 chr11 35517289 35517579 -86326277 - ORR1A2 LTR MaLR 0 327 28 3 855 456 311 64 43 chr11 35517903 35518185 -86325671 + L1M2a LINE L1 174 461 -6707 4 855 352 176 103 26 chr11 35518365 35518478 -86325378 + L1M2a LINE L1 4208 4328 -2833 4 855 895 218 91 5 chr11 35518505 35518703 -86325153 + B3 SINE B2 1 215 -1 4 855 512 281 131 31 chr11 35518717 35518908 -86324948 + B3 SINE B2 2 211 -5 4 855 248 267 238 0 chr11 35518909 35519014 -86324842 + ID_B1 SINE B4 92 221 -3 4 855 258 292 0 15 chr11 35519014 35519080 -86324776 + G-rich Low_complexity Low_complexity 3 67 0 4 855 1423 153 14 0 chr11 35520225 35520447 -86323409 - URR1B DNA MER1_type 0 225 1 4 106 330 323 132 1 chr11 35520471 35520665 -86323191 - Charlie8 DNA MER1_type -2146 282 64 4 856 223 241 0 17 chr11 35520825 35520884 -86322972 + GA-rich Low_complexity Low_complexity 1 58 0 4 856 276 297 129 49 chr11 35521016 35521179 -86322677 - RMER20B LTR ERVK -265 362 187 4 856 314 314 55 30 chr11 35521780 35521944 -86321912 - L1MEe LINE L1 -3909 945 778 4 856 230 266 50 92 chr11 35522919 35523060 -86320796 - MamGypLTR1c LTR Gypsy -555 248 114 5 856 238 292 31 0 chr11 35523244 35523309 -86320547 + GA-rich Low_complexity Low_complexity 3 69 0 5 856 189 267 50 0 chr11 35524591 35524651 -86319205 + MIRc SINE MIR 198 260 -8 5 856 449 106 0 0 chr11 35525907 35525973 -86317883 - B1_Mur3 SINE Alu -2 147 82 5 856 1306 102 22 13 chr11 35526019 35526051 -86317805 + ETnERV2-int LTR ERVK 1388 1420 -5986 5 856 212 0 0 35 chr11 35526051 35526080 -86317776 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 856 1306 102 22 13 chr11 35526080 35526276 -86317580 + ETnERV2-int LTR ERVK 1421 1618 -5788 5 856 893 279 35 88 chr11 35526301 35526584 -86317272 - RMER20B LTR ERVK -22 605 338 5 856 1855 110 29 1 chr11 35526527 35526813 -86317043 + ORR1A3 LTR MaLR 67 378 0 5 856 731 97 0 0 chr11 35526813 35526926 -86316930 + Lx5 LINE L1 4364 4476 -1401 5 856 6575 135 15 12 chr11 35526917 35528477 -86315379 + Lx5 LINE L1 4849 6425 -625 5 856 2205 88 42 0 chr11 35528477 35528784 -86315072 - ORR1A2 LTR MaLR 0 327 8 5 856 2597 163 29 11 chr11 35528785 35529238 -86314618 + Lx5 LINE L1 6421 6881 -169 5 856 247 292 0 73 chr11 35529238 35529334 -86314522 - MT2B LTR ERVL -278 323 235 6 856 181 280 60 0 chr11 35529334 35529384 -86314472 - L2a LINE L2 -19 3407 3355 6 856 1486 212 58 41 chr11 35529674 35530038 -86313818 - ORR1D2 LTR MaLR 0 370 1 6 856 2647 140 22 17 chr11 35530296 35530711 -86313145 + MTC LTR MaLR 1 417 -4 6 856 219 314 95 58 chr11 35530780 35530993 -86312863 - MIR SINE MIR -38 230 2 6 856 1104 296 97 29 chr11 35531501 35531912 -86311944 - RLTR22_Mur LTR ERVK -1040 808 370 6 856 323 258 51 101 chr11 35531883 35532021 -86311835 + RLTR23 LTR ERV1 300 430 0 6 856 245 72 0 45 chr11 35532211 35532245 -86311611 + B1_Mm SINE Alu 104 137 -10 6 856 234 62 0 0 chr11 35532245 35532277 -86311579 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 856 240 269 13 0 chr11 35532319 35532397 -86311459 + L1MB5 LINE L1 5879 5957 -217 6 856 229 321 51 13 chr11 35532472 35532551 -86311305 + ID4 SINE ID 2 83 0 7 856 466 43 29 0 chr11 35532825 35532894 -86310962 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 856 264 59 0 0 chr11 35532927 35532961 -86310895 + (T)n Simple_repeat Simple_repeat 1 34 0 7 856 775 167 0 55 chr11 35532961 35533107 -86310749 - B1_Mur4 SINE Alu 0 150 13 7 856 778 58 0 19 chr11 35533180 35533286 -86310570 - BC1_Mm scRNA scRNA -48 104 1 7 856 595 193 0 102 chr11 35533622 35533749 -86310107 - PB1D9 SINE Alu -5 115 2 7 856 493 238 23 47 chr11 35533849 35533977 -86309879 + B1F SINE Alu 25 149 0 7 856 731 156 16 0 chr11 35534749 35534877 -86308979 + B1_Mur1 SINE Alu 20 149 0 7 856 230 81 0 26 chr11 35534878 35534916 -86308940 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 7 856 727 143 100 31 chr11 35535178 35535308 -86308548 + B1_Mus2 SINE Alu 1 139 -8 7 856 430 238 55 16 chr11 35535415 35535543 -86308313 + L1MB7 LINE L1 5854 5986 -198 8 856 390 321 60 19 chr11 35535803 35536168 -86307688 + L1ME3 LINE L1 5653 6031 -131 8 856 934 222 27 11 chr11 35536203 35536390 -86307466 - B3 SINE B2 -9 207 18 8 856 420 243 9 18 chr11 35536397 35536506 -86307350 + L1ME3 LINE L1 6048 6155 -7 8 856 206 231 92 0 chr11 35536751 35536816 -86307040 - L2 LINE L2 -557 2862 2792 8 856 33 0 0 0 chr11 35537246 35537279 -86306577 + AT_rich Low_complexity Low_complexity 1 33 0 8 856 187 180 78 20 chr11 35537372 35537423 -86306433 - MIRb SINE MIR -191 77 24 8 856 356 263 84 0 chr11 35538287 35538382 -86305474 - RMER5 LTR ERV1 0 534 432 8 856 677 288 78 20 chr11 35538414 35538669 -86305187 - RMER5 LTR ERV1 -188 346 77 8 856 463 175 0 36 chr11 35538669 35538741 -86305115 - L1_Mur3 LINE L1 -7414 298 228 8 856 432 0 0 0 chr11 35538741 35538789 -86305067 + (AGGGGG)n Simple_repeat Simple_repeat 2 49 0 8 856 827 193 39 1 chr11 35538789 35538972 -86304884 - L1_Mur3 LINE L1 -7072 640 457 8 856 402 237 56 133 chr11 35538972 35539167 -86304689 - RLTR14 LTR ERV1 0 382 203 8 856 833 191 6 6 chr11 35539423 35539602 -86304254 - L1_Mur3 LINE L1 -7494 218 40 8 856 2517 133 74 2 chr11 35539651 35540044 -86303812 - MTC LTR MaLR 0 421 1 9 856 831 273 5 5 chr11 35540797 35540985 -86302871 + MTE2b LTR MaLR 1 188 -191 9 856 528 293 31 19 chr11 35541377 35541537 -86302319 - RSINE1 SINE B4 -1 164 3 9 856 723 190 145 6 chr11 35541807 35541966 -86301890 + B2_Mm2 SINE B2 1 181 -14 9 856 399 325 23 31 chr11 35541974 35542104 -86301752 - MER20 DNA MER1_type -73 146 18 9 856 278 298 124 39 chr11 35542435 35542564 -86301292 + B1F SINE Alu 1 140 -9 9 856 505 267 35 58 chr11 35543260 35543431 -86300425 + B4A SINE B4 15 181 -111 9 856 206 257 57 0 chr11 35543434 35543504 -86300352 + (CATA)n Simple_repeat Simple_repeat 1 74 0 9 856 258 135 0 0 chr11 35543542 35543579 -86300277 + RLTR26 LTR ERVK 1 37 -605 9 856 3117 125 22 108 chr11 35543565 35544249 -86299607 + RMER17A2 LTR ERVK 278 902 -4 9 856 252 362 0 24 chr11 35544839 35544921 -86298935 + ID4_ SINE ID 4 83 0 1 856 623 226 0 0 chr11 35545037 35545161 -86298695 + MTC LTR MaLR 1 124 -297 1 856 653 256 0 0 chr11 35545160 35545277 -86298579 + B3 SINE B2 96 212 -4 1 856 336 172 33 33 chr11 35545308 35545368 -86298488 + B1_Mur4 SINE Alu 1 60 -90 1 856 395 0 0 163 chr11 35545370 35545801 -86298055 + (CAGAG)n Simple_repeat Simple_repeat 1 360 0 1 856 251 224 103 0 chr11 35545864 35545922 -86297934 + B1_Mus2 SINE Alu 42 105 -42 1 856 293 256 93 77 chr11 35546420 35546602 -86297254 - L1MC4 LINE L1 -191 7851 7667 1 856 221 231 0 0 chr11 35546709 35546748 -86297108 + polypyrimidine Low_complexity Low_complexity 5 43 0 1 856 818 198 6 0 chr11 35546748 35546925 -86296931 + CT-rich Low_complexity Low_complexity 2 179 0 1 856 303 28 0 0 chr11 35546950 35546986 -86296870 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 1 856 568 195 7 79 chr11 35546997 35547136 -86296720 - B1_Mm SINE Alu -16 131 3 1 856 253 181 209 35 chr11 35547367 35547453 -86296403 + HAL1 LINE L1 1306 1406 -1101 1 856 2893 259 83 28 chr11 35547634 35548677 -86295179 + Lx8 LINE L1 6126 7226 -247 1 856 758 253 83 126 chr11 35548739 35549232 -86294624 + RLTR11A LTR ERVK 1 472 -56 1 856 1345 102 0 0 chr11 35549503 35549689 -86294167 + B2_Mm2 SINE B2 1 186 -9 1 856 342 0 0 0 chr11 35549824 35549862 -86293994 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 856 844 29 0 0 chr11 35549862 35549964 -86293892 - B1_Mm SINE Alu -9 138 37 1 856 355 253 0 54 chr11 35549888 35549980 -86293876 - MT2B LTR ERVL -337 264 178 1 856 1219 48 7 0 chr11 35550132 35550279 -86293577 + B1_Mus1 SINE Alu 1 148 0 1 856 207 108 0 26 chr11 35550279 35550317 -86293539 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 856 869 211 22 17 chr11 35550392 35550570 -86293286 + B3A SINE B2 3 181 -17 1 856 200 34 0 33 chr11 35550590 35550620 -86293236 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 1 856 239 359 49 25 chr11 35551036 35551199 -86292657 - MIRb SINE MIR -83 185 19 1 856 238 350 87 27 chr11 35551266 35551451 -86292405 - MIRb SINE MIR -58 210 15 1 856 433 262 75 94 chr11 35552110 35552270 -86291586 + RSINE1 SINE B4 3 159 -6 1 856 204 40 0 0 chr11 35552320 35552345 -86291511 + (TATG)n Simple_repeat Simple_repeat 1 25 0 1 856 198 0 0 0 chr11 35552382 35552404 -86291452 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 856 468 172 23 11 chr11 35552404 35552492 -86291364 - B1_Mur1 SINE Alu -13 136 48 1 856 622 220 0 0 chr11 35552627 35552711 -86291145 + PB1D9 SINE Alu 1 84 -36 1 856 348 43 0 0 chr11 35552711 35552757 -86291099 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 856 622 220 0 0 chr11 35552757 35552781 -86291075 + PB1D9 SINE Alu 85 108 -12 1 856 216 0 0 0 chr11 35552781 35552805 -86291051 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 856 314 346 25 5 chr11 35554118 35554321 -86289535 + HERV16-int LTR ERVL 916 1122 -3874 1 856 376 245 10 2 chr11 35554989 35555081 -86288775 + ID4_ SINE ID 1 97 -55 1 856 1179 75 0 0 chr11 35555144 35555290 -86288566 + B1_Mus2 SINE Alu 2 147 0 1 856 1478 101 148 61 chr11 35555527 35555791 -86288065 + MT2B2 LTR ERVL 1 287 -297 1 856 5474 113 61 1 chr11 35555750 35556651 -86287205 + ORR1A2-int LTR MaLR 718 1672 -291 1 856 1426 101 5 0 chr11 35556646 35556855 -86287001 + ORR1A2 LTR MaLR 118 327 0 1 856 834 253 45 4 chr11 35557332 35557578 -86286278 + MER45B DNA Tip100 722 977 -63 1 856 387 290 75 55 chr11 35557921 35558067 -86285789 - RSINE1 SINE B4 -4 161 13 1 856 355 185 0 58 chr11 35558186 35558255 -86285601 + ORR1D2 LTR MaLR 1 65 -305 1 856 262 271 62 45 chr11 35558291 35558403 -86285453 + ORR1D2 LTR MaLR 219 332 -38 1 856 325 299 107 21 chr11 35558470 35558610 -86285246 + ORR1E LTR MaLR 28 179 -180 1 856 3214 55 8 2 chr11 35558737 35559135 -86284721 - MTB LTR MaLR 0 400 1 1 856 1402 4 12 12 chr11 35559622 35559866 -86283990 + (TG)n Simple_repeat Simple_repeat 1 244 0 1 856 372 185 61 61 chr11 35559871 35559959 -86283897 + ID_B1 SINE B4 124 214 -10 1 856 519 31 0 0 chr11 35559959 35560024 -86283832 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 1 856 606 273 13 7 chr11 35560033 35560175 -86283681 + B3 SINE B2 5 156 -60 1 856 216 86 0 0 chr11 35560175 35560210 -86283646 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 1 856 378 0 0 0 chr11 35560281 35560323 -86283533 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 856 324 0 0 0 chr11 35560326 35560362 -86283494 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 856 438 229 147 0 chr11 35560401 35560510 -86283346 - RSINE1 SINE B4 -38 127 3 1 856 475 258 0 39 chr11 35560585 35560714 -86283142 + RMER30 DNA MER1_type 56 179 -23 1 856 1248 236 49 26 chr11 35560745 35561089 -86282767 + ORR1E LTR MaLR 3 354 -5 1 856 460 305 37 45 chr11 35561090 35561224 -86282632 + RSINE1 SINE B4 8 140 -25 1 856 216 0 0 0 chr11 35561230 35561254 -86282602 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 856 3283 55 10 0 chr11 35561296 35561698 -86282158 + L1_Mus1 LINE L1 6162 6567 0 1 856 654 172 32 16 chr11 35561723 35561847 -86282009 + B1_Mur2 SINE Alu 17 142 -7 1 856 419 109 0 0 chr11 35561903 35561967 -86281889 + B1_Mm SINE Alu 84 147 0 1 856 256 253 12 48 chr11 35562120 35562203 -86281653 - MLT1A1 LTR MaLR -6 402 323 1 856 485 221 0 63 chr11 35562611 35562722 -86281134 + PB1D10 SINE Alu 5 108 -9 1 856 500 260 10 0 chr11 35562744 35562848 -86281008 + B3A SINE B2 2 106 -92 1 856 390 21 0 0 chr11 35562857 35562904 -86280952 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 856 27 49 0 0 chr11 35562906 35562947 -86280909 + AT_rich Low_complexity Low_complexity 1 41 0 1 856 1219 254 49 42 chr11 35563499 35563885 -86279971 + MTD LTR MaLR 31 419 0 1 856 277 302 28 4 chr11 35564399 35564528 -86279328 + ID_B1 SINE B4 75 204 -20 1 856 251 247 39 13 chr11 35564501 35564579 -86279277 + MER20 DNA MER1_type 109 188 -31 1 856 337 323 107 41 chr11 35564605 35564876 -86278980 + B4 SINE B4 3 291 -1 1 856 218 184 0 0 chr11 35564972 35565010 -86278846 + (CACG)n Simple_repeat Simple_repeat 2 39 0 1 856 983 119 0 65 chr11 35565443 35565596 -86278260 + B1_Mur4 SINE Alu 1 143 -7 1 856 260 260 29 29 chr11 35565833 35565936 -86277920 - MLT1A1 LTR MaLR -2 406 304 1 856 1365 90 21 0 chr11 35566001 35566189 -86277667 + B2_Mm2 SINE B2 2 193 -2 1 856 329 230 67 33 chr11 35566490 35566580 -86277276 + ID_B1 SINE B4 111 203 -21 1 856 605 229 45 8 chr11 35566681 35566813 -86277043 - RSINE1 SINE B4 -26 139 3 1 856 549 178 56 0 chr11 35566885 35566992 -86276864 - B1_Mur2 SINE Alu -11 138 26 1 856 279 240 130 116 chr11 35566992 35567031 -86276825 - B4 SINE B4 -77 215 68 1 856 882 175 151 6 chr11 35567203 35567375 -86276481 + B3 SINE B2 1 197 -19 1 856 625 265 0 26 chr11 35567741 35567892 -86275964 + B1_Mur1 SINE Alu 3 149 0 1 856 203 103 26 0 chr11 35567892 35567931 -86275925 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 1 856 654 215 132 21 chr11 35567946 35568136 -86275720 + B3 SINE B2 6 216 0 1 856 884 119 7 29 chr11 35568207 35568345 -86275511 + B1_Mur4 SINE Alu 3 137 -13 1 856 201 74 0 0 chr11 35568345 35568372 -86275484 + (CAAAG)n Simple_repeat Simple_repeat 3 29 0 1 856 247 312 161 16 chr11 35569199 35569391 -86274465 + L2 LINE L2 2834 3053 -366 1 856 294 87 0 0 chr11 35569459 35569505 -86274351 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 856 746 232 5 67 chr11 35569669 35569863 -86273993 + B3A SINE B2 1 182 -16 1 856 342 0 0 0 chr11 35569866 35569904 -86273952 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 1 856 216 300 77 11 chr11 35570851 35570942 -86272914 - L2a LINE L2 -35 3391 3295 1 856 1653 129 95 0 chr11 35571114 35571377 -86272479 - Lx5 LINE L1 -283 6767 6480 1 856 721 167 131 0 chr11 35571372 35571540 -86272316 + Lx5 LINE L1 6818 7007 -43 1 856 1393 87 16 0 chr11 35571756 35571941 -86271915 + B2_Mm2 SINE B2 1 188 -7 1 856 546 196 80 29 chr11 35572076 35572213 -86271643 + B1_Mur2 SINE Alu 1 144 -5 1 856 280 286 0 0 chr11 35572482 35572559 -86271297 - MIR SINE MIR -113 149 73 1 856 1249 41 0 0 chr11 35573109 35573255 -86270601 + B1_Mus2 SINE Alu 2 147 0 1 856 1117 42 35 7 chr11 35574935 35575078 -86268778 - B1_Mm SINE Alu 0 147 1 1 856 832 193 54 30 chr11 35575222 35575425 -86268431 + B3 SINE B2 1 208 -8 1 856 650 126 33 25 chr11 35575626 35575871 -86267985 + (TG)n Simple_repeat Simple_repeat 1 247 0 1 856 1993 186 93 5 chr11 35576232 35576649 -86267207 - Lx9 LINE L1 -7 7637 7184 1 856 300 278 17 100 chr11 35576756 35576876 -86266980 + MT2B LTR ERVL 155 264 -337 1 856 707 210 7 0 chr11 35576771 35576909 -86266947 + B1_Mus1 SINE Alu 9 147 -1 1 856 198 0 0 0 chr11 35577054 35577076 -86266780 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 856 241 297 25 31 chr11 35577184 35577347 -86266509 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 261 291 25 31 chr11 35577538 35577701 -86266155 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 227 304 25 31 chr11 35577754 35577917 -86265939 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 211 310 25 31 chr11 35577934 35578097 -86265759 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 261 291 25 31 chr11 35578180 35578343 -86265513 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 245 297 25 31 chr11 35578370 35578533 -86265323 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 227 304 25 31 chr11 35578550 35578713 -86265143 + (CAGAGA)n Simple_repeat Simple_repeat 1 162 0 1 856 211 291 27 59 chr11 35578802 35578988 -86264868 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 1 856 235 276 25 50 chr11 35579048 35579208 -86264648 + (CAGAGA)n Simple_repeat Simple_repeat 1 156 0 1 856 212 283 25 50 chr11 35579225 35579385 -86264471 + (CAGAGA)n Simple_repeat Simple_repeat 1 156 0 1 856 442 270 35 0 chr11 35580044 35580159 -86263697 - PB1D9 SINE Alu 0 120 2 2 856 321 274 95 0 chr11 35580617 35580701 -86263155 - RSINE1 SINE B4 -71 94 3 2 856 1047 43 0 14 chr11 35580724 35580865 -86262991 - B1_Mm SINE Alu -1 146 8 2 856 710 228 61 28 chr11 35580729 35580941 -86262915 - ID_B1 SINE B4 -4 220 2 2 856 1205 55 0 0 chr11 35580963 35581108 -86262748 - B1_Mus1 SINE Alu -2 146 2 2 856 558 209 0 9 chr11 35581252 35581358 -86262498 - PB1D9 SINE Alu -11 109 5 2 856 685 141 87 40 chr11 35581392 35581518 -86262338 - B1_Mus2 SINE Alu -15 132 1 2 856 340 261 35 35 chr11 35581855 35581970 -86261886 - MLT1A1 LTR MaLR -293 115 1 2 856 821 87 21 21 chr11 35582331 35582472 -86261384 - B1_Mur3 SINE Alu 0 149 9 2 856 207 0 0 0 chr11 35583108 35583131 -86260725 + (CGG)n Simple_repeat Simple_repeat 3 25 0 2 856 186 43 0 0 chr11 35584554 35584577 -86259279 + (TTTCG)n Simple_repeat Simple_repeat 3 25 0 2 856 805 127 16 0 chr11 35584583 35584709 -86259147 - B1_Mm SINE Alu -13 134 7 2 856 484 287 9 9 chr11 35584735 35584851 -86259005 + PB1D9 SINE Alu 5 120 0 2 856 636 189 98 0 chr11 35585010 35585142 -86258714 + B1_Mur3 SINE Alu 5 149 0 2 856 201 39 0 0 chr11 35585143 35585169 -86258687 + (A)n Simple_repeat Simple_repeat 1 26 0 2 856 272 186 0 12 chr11 35585352 35585413 -86258443 - B1_Mus1 SINE Alu -89 59 2 2 856 1212 89 78 6 chr11 35585420 35585600 -86258256 - B2_Mm2 SINE B2 -2 193 1 2 856 541 218 103 27 chr11 35586193 35586377 -86257479 - B3A SINE B2 0 198 1 2 856 371 275 22 11 chr11 35586494 35586586 -86257270 + RSINE1 SINE B4 58 150 -15 2 856 221 208 0 86 chr11 35586776 35586834 -86257022 - B1_Mur2 SINE Alu -25 124 72 2 856 21 0 0 0 chr11 35586942 35586963 -86256893 + AT_rich Low_complexity Low_complexity 1 21 0 2 856 1130 42 28 0 chr11 35586978 35587120 -86256736 + B1_Mus2 SINE Alu 1 146 -1 2 856 1215 54 0 0 chr11 35587143 35587290 -86256566 + B1_Mus2 SINE Alu 1 147 0 2 856 295 203 0 17 chr11 35587908 35587968 -86255888 + ID4_ SINE ID 2 60 -23 2 856 269 285 67 165 chr11 35588254 35588418 -86255438 + B1F SINE Alu 1 148 -1 2 856 490 225 97 67 chr11 35588679 35588874 -86254982 - B3 SINE B2 -15 201 1 2 856 215 119 22 87 chr11 35589258 35589304 -86254552 + B1_Mus2 SINE Alu 66 108 -39 2 856 1267 152 83 0 chr11 35590024 35590228 -86253628 - URR1B DNA MER1_type 0 225 5 2 856 601 153 105 0 chr11 35590399 35590523 -86253333 - B1_Mus1 SINE Alu 0 148 12 2 856 21 36 0 0 chr11 35591016 35591044 -86252812 + AT_rich Low_complexity Low_complexity 1 28 0 2 856 385 224 43 10 chr11 35591543 35591646 -86252210 + B3A SINE B2 1 113 -82 2 856 320 239 11 64 chr11 35592363 35592375 -86251481 + B4 SINE B4 79 85 -207 2 856 576 221 31 8 chr11 35592375 35592503 -86251353 + B1_Mur3 SINE Alu 1 131 -18 2 856 284 261 46 0 chr11 35592624 35592689 -86251167 + B1_Mur3 SINE Alu 1 68 -81 2 856 668 131 21 71 chr11 35592699 35592839 -86251017 - B1_Mur3 SINE Alu -2 147 15 2 856 295 267 12 85 chr11 35592839 35592863 -86250993 - ID_B1 SINE B4 0 224 73 2 856 573 65 65 0 chr11 35593463 35593555 -86250301 - B2_Mm2 SINE B2 -3 192 95 2 856 353 224 13 38 chr11 35593561 35593640 -86250216 + RSINE1 SINE B4 59 135 -30 2 856 227 208 0 77 chr11 35594034 35594086 -86249770 - Lx8 LINE L1 -272 7201 7154 2 856 512 151 108 45 chr11 35595274 35595385 -86248471 + B1_Mur1 SINE Alu 19 136 -13 2 856 25 31 0 0 chr11 35595389 35595421 -86248435 + AT_rich Low_complexity Low_complexity 1 32 0 2 856 459 194 83 0 chr11 35595549 35595657 -86248199 + B1_Mur1 SINE Alu 32 148 -1 2 856 548 208 95 20 chr11 35596038 35596185 -86247671 + B4A SINE B4 2 159 -133 2 856 894 234 25 0 chr11 35596232 35596433 -86247423 - B3 SINE B2 -4 212 7 2 856 280 251 86 86 chr11 35596618 35596805 -86247051 - L1MC1 LINE L1 -42 6291 6105 2 856 219 45 43 22 chr11 35597140 35597186 -86246670 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 856 1007 84 14 14 chr11 35597186 35597322 -86246534 - B1_Mus1 SINE Alu -11 137 1 2 856 23 33 0 0 chr11 35597342 35597372 -86246484 + AT_rich Low_complexity Low_complexity 1 30 0 2 856 689 287 116 52 chr11 35597372 35597640 -86246216 - B4 SINE B4 -6 286 2 2 856 541 251 96 30 chr11 35598179 35598376 -86245480 - B3 SINE B2 0 216 7 2 856 704 112 0 0 chr11 35598442 35598549 -86245307 - B2_Mm2 SINE B2 -88 107 1 2 856 246 32 0 0 chr11 35598558 35598589 -86245267 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 856 649 44 22 0 chr11 35598589 35598679 -86245177 - B1_Mm SINE Alu -9 138 47 2 856 296 203 0 92 chr11 35598623 35598699 -86245157 - MT2B2 LTR ERVL -327 257 189 2 856 913 128 15 0 chr11 35600279 35600412 -86243444 + B1_Mus2 SINE Alu 1 135 -12 2 856 539 266 86 48 chr11 35601008 35601300 -86242556 - MER33 DNA MER1_type 0 324 22 2 856 438 196 57 29 chr11 35601327 35601432 -86242424 - B1_Mur1 SINE Alu 0 149 42 2 856 702 191 49 7 chr11 35602708 35602850 -86241006 - B1_Mur2 SINE Alu 0 149 2 2 856 264 250 19 132 chr11 35604886 35604992 -86238864 + L2c LINE L2 3289 3382 -5 2 856 444 256 201 11 chr11 35605207 35605381 -86238475 - B3 SINE B2 0 216 10 2 856 608 205 32 112 chr11 35605904 35606091 -86237765 - B3 SINE B2 -44 172 1 2 856 180 0 0 0 chr11 35606970 35606990 -86236866 + (T)n Simple_repeat Simple_repeat 1 20 0 2 856 1155 62 14 0 chr11 35606990 35607135 -86236721 - B1_Mus1 SINE Alu 0 148 2 2 856 276 213 160 0 chr11 35607202 35607277 -86236579 - B1_Mus1 SINE Alu -55 93 7 2 856 912 133 0 0 chr11 35607538 35607718 -86236138 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 856 182 192 19 0 chr11 35607720 35607772 -86236084 + CT-rich Low_complexity Low_complexity 2 54 0 2 856 667 287 185 22 chr11 35608280 35608594 -86235262 - ORR1D2 LTR MaLR 0 370 6 2 856 318 218 33 54 chr11 35608791 35608883 -86234973 - PB1 SINE Alu 0 127 38 2 856 688 225 0 36 chr11 35609524 35609690 -86234166 - RSINE1 SINE B4 -4 161 2 2 856 228 273 126 39 chr11 35610415 35610518 -86233338 + PB1D7 SINE Alu 3 114 -6 2 856 180 0 0 0 chr11 35610617 35610637 -86233219 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 856 263 130 25 25 chr11 35611739 35611818 -86232038 + (CCG)n Simple_repeat Simple_repeat 3 81 0 2 856 21 0 0 0 chr11 35611909 35611930 -86231926 + GC_rich Low_complexity Low_complexity 1 21 0 2 856 972 274 51 12 chr11 35613610 35613940 -86229916 + MLT2B4 LTR ERVL 1 338 -76 2 856 3495 25 5 0 chr11 35613989 35614383 -86229473 - MTA_Mm LTR MaLR 0 396 1 2 856 1191 88 0 6 chr11 35614463 35614624 -86229232 + B2_Mm2 SINE B2 3 162 -33 2 856 183 42 0 0 chr11 35614624 35614648 -86229208 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 856 294 29 0 0 chr11 35614651 35614686 -86229170 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2 856 893 138 35 0 chr11 35614762 35614907 -86228949 + B1_Mur4 SINE Alu 1 150 0 2 856 262 283 25 0 chr11 35615203 35615323 -86228533 + ORR1B1-int LTR MaLR 632 754 -755 2 856 917 120 0 0 chr11 35615225 35615350 -86228506 + B1_Mus1 SINE Alu 11 135 -13 2 856 216 0 0 0 chr11 35615350 35615374 -86228482 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 856 967 181 134 10 chr11 35615412 35615613 -86228243 + URR1A DNA MER1_type 1 226 0 2 856 1092 50 36 0 chr11 35615583 35615722 -86228134 + B2_Mm2 SINE B2 2 145 -50 2 856 255 61 0 0 chr11 35615750 35615783 -86228073 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 2 856 450 53 0 0 chr11 35615826 35615883 -86227973 + (TCTG)n Simple_repeat Simple_repeat 1 57 0 2 856 186 103 0 0 chr11 35615927 35615956 -86227900 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 2 856 389 95 16 0 chr11 35616003 35616066 -86227790 + (TCCCC)n Simple_repeat Simple_repeat 5 68 0 2 856 759 193 43 0 chr11 35616072 35616212 -86227644 - B1_Mus2 SINE Alu 0 147 2 2 856 302 227 111 22 chr11 35616434 35616524 -86227332 - RLTR25A LTR ERVK -484 619 522 2 856 798 70 0 0 chr11 35616457 35616557 -86227299 - B1_Mus1 SINE Alu -35 113 14 2 856 504 0 0 0 chr11 35616601 35616657 -86227199 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 856 1228 95 6 0 chr11 35616661 35616830 -86227026 - B2_Mm1t SINE B2 -22 171 2 2 856 213 81 54 0 chr11 35616939 35616976 -86226880 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2 856 266 184 142 102 chr11 35616978 35617083 -86226773 - L1M4 LINE L1 -946 5200 5084 2 856 1312 86 11 6 chr11 35617083 35617258 -86226598 + B2_Mm2 SINE B2 2 177 -18 2 856 266 184 142 102 chr11 35617258 35617328 -86226528 - L1M4 LINE L1 -1063 5083 5018 2 856 626 131 0 39 chr11 35617348 35617451 -86226405 - B1_Mus1 SINE Alu -26 122 24 2 856 236 192 78 139 chr11 35617372 35617487 -86226369 + YREP_Mm Unknown Unknown 222 329 -1483 2 856 243 196 137 0 chr11 35617487 35617538 -86226318 - L1M2c LINE L1 -4823 1966 1909 2 856 577 268 122 0 chr11 35617666 35617871 -86225985 - Lx8 LINE L1 -267 7206 6977 2 856 222 250 0 72 chr11 35617996 35618065 -86225791 - ID4_ SINE ID -6 77 14 2 856 312 313 105 29 chr11 35618174 35618345 -86225511 - L1MEg LINE L1 -4005 2079 1896 2 856 874 171 7 0 chr11 35618347 35618493 -86225363 + B1_Mus2 SINE Alu 1 147 0 3 856 426 277 93 35 chr11 35618493 35618556 -86225300 - Tigger1 DNA MER2_type -46 2372 2310 3 856 1184 75 79 28 chr11 35618556 35618734 -86225122 + B2_Mm2 SINE B2 1 187 -8 3 856 426 277 93 35 chr11 35618734 35618842 -86225014 - Tigger1 DNA MER2_type -109 2309 2191 3 856 454 200 29 20 chr11 35618880 35618982 -86224874 - Tigger1 DNA MER2_type -388 2030 1928 3 856 275 244 104 62 chr11 35619162 35619258 -86224598 - Tigger1 DNA MER2_type -818 1600 1501 3 856 282 29 0 0 chr11 35619299 35619334 -86224522 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 3 856 742 289 170 7 chr11 35619347 35619636 -86224220 - Tigger1 DNA MER2_type -1047 1371 1036 3 856 618 219 170 6 chr11 35619633 35619798 -86224058 - B3 SINE B2 0 216 25 3 856 2537 184 92 22 chr11 35619811 35620390 -86223466 - RMER20B LTR ERVK -3 624 6 3 856 1935 122 57 60 chr11 35620674 35621040 -86222816 - RLTR23 LTR ERV1 0 430 66 3 856 532 237 208 39 chr11 35621092 35621359 -86222497 - Tigger1 DNA MER2_type -1759 659 348 3 856 859 176 95 35 chr11 35621293 35621493 -86222363 - RMER6B LTR ERVK -35 426 215 3 856 307 248 62 148 chr11 35622939 35623067 -86220789 + PB1D10 SINE Alu 1 117 0 3 856 226 222 93 0 chr11 35623578 35623632 -86220224 + B1_Mur1 SINE Alu 91 149 0 3 856 251 206 31 16 chr11 35623759 35623823 -86220033 + Lx8 LINE L1 6429 6493 -980 3 856 385 225 56 0 chr11 35623990 35624079 -86219777 + Lx8 LINE L1 6803 6896 -577 3 856 529 233 165 23 chr11 35625074 35625250 -86218606 - ID_B1 SINE B4 -19 205 5 3 856 250 195 169 48 chr11 35625456 35625580 -86218276 - B1F2 SINE Alu -7 142 4 3 856 462 191 43 0 chr11 35625722 35625816 -86218040 - PB1D10 SINE Alu 0 117 20 3 856 397 227 102 0 chr11 35626624 35626712 -86217144 + ID_B1 SINE B4 6 102 -122 3 856 352 212 47 66 chr11 35626720 35626826 -86217030 - PB1D10 SINE Alu -2 115 12 3 856 650 182 91 0 chr11 35626868 35626989 -86216867 - B1_Mus1 SINE Alu -15 133 2 3 856 296 267 32 43 chr11 35627003 35627097 -86216759 + PB1D7 SINE Alu 15 107 -13 3 856 251 365 24 0 chr11 35627340 35627425 -86216431 - PB1 SINE Alu -40 87 1 3 856 24 53 0 0 chr11 35627685 35627723 -86216133 + AT_rich Low_complexity Low_complexity 1 38 0 3 856 403 48 16 16 chr11 35627723 35627787 -86216069 - L1_Mus2 LINE L1 -2 6564 6501 3 856 1173 106 66 11 chr11 35628339 35628520 -86215336 + B2_Mm2 SINE B2 1 191 -4 3 856 645 276 8 0 chr11 35628798 35628932 -86214924 + ID_B1 SINE B4 82 216 -8 3 856 249 230 140 0 chr11 35629453 35629553 -86214303 + B2_Mm2 SINE B2 2 124 -92 3 856 514 254 31 8 chr11 35631218 35631345 -86212511 - RSINE1 SINE B4 -25 140 11 3 856 254 130 22 0 chr11 35632062 35632108 -86211748 + B3A SINE B2 2 48 -150 3 856 205 167 48 0 chr11 35632108 35632150 -86211706 + (CATA)n Simple_repeat Simple_repeat 1 44 0 3 856 435 318 19 0 chr11 35632447 35632554 -86211302 + PB1D7 SINE Alu 1 109 -11 3 856 295 271 135 3 chr11 35632625 35632728 -86211128 + B1F2 SINE Alu 13 125 -24 3 856 318 258 62 31 chr11 35632833 35632929 -86210927 + PB1D7 SINE Alu 19 117 -3 3 856 236 242 0 127 chr11 35633012 35633083 -86210773 + ID4_ SINE ID 4 65 -18 3 856 250 254 15 15 chr11 35633101 35633169 -86210687 + B1_Mur2 SINE Alu 79 146 -1 3 856 580 186 19 10 chr11 35633625 35633744 -86210112 + B1_Mur4 SINE Alu 16 135 -15 3 856 318 50 0 0 chr11 35633774 35633814 -86210042 + (GGA)n Simple_repeat Simple_repeat 1 40 0 3 856 419 219 143 0 chr11 35634028 35634133 -86209723 + PB1D9 SINE Alu 1 120 0 3 856 365 308 87 17 chr11 35634215 35634387 -86209469 + B3A SINE B2 2 185 -13 3 856 643 210 72 0 chr11 35634904 35635042 -86208814 + B1_Mur1 SINE Alu 1 148 -1 3 856 378 308 132 16 chr11 35635111 35635362 -86208494 + B4A SINE B4 3 282 -10 3 856 874 193 0 0 chr11 35635694 35635844 -86208012 - B1_Mur4 SINE Alu 0 150 1 3 856 243 275 167 56 chr11 35635876 35635984 -86207872 + B1F SINE Alu 1 120 0 3 856 1176 54 14 0 chr11 35636617 35636765 -86207091 + B1_Mur4 SINE Alu 1 150 0 3 856 195 129 0 0 chr11 35636767 35636798 -86207058 + (A)n Simple_repeat Simple_repeat 1 31 0 3 856 351 0 0 0 chr11 35637044 35637083 -86206773 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 856 576 199 12 141 chr11 35637105 35637275 -86206581 - B1_Mus1 SINE Alu 0 148 1 3 856 1304 38 0 6 chr11 35637396 35637554 -86206302 - B2_Mm2 SINE B2 -14 181 25 3 856 575 257 33 28 chr11 35637618 35637798 -86206058 - B3A SINE B2 -16 182 2 3 856 196 373 130 25 chr11 35638096 35638258 -86205598 + L2b LINE L2 3197 3375 0 3 856 227 306 27 27 chr11 35638596 35638670 -86205186 + L2 LINE L2 2869 2942 -477 3 856 544 303 52 46 chr11 35638711 35638905 -86204951 + B3A SINE B2 1 195 -3 3 856 619 234 87 7 chr11 35638918 35639056 -86204800 - B1_Mur2 SINE Alu 0 149 1 3 856 22 35 0 0 chr11 35639066 35639095 -86204761 + AT_rich Low_complexity Low_complexity 1 29 0 3 856 492 202 77 26 chr11 35639232 35639349 -86204507 - B3A SINE B2 -75 123 1 3 856 298 203 12 129 chr11 35640471 35640556 -86203300 - ID4_ SINE ID 0 83 9 3 856 21 0 0 0 chr11 35640687 35640708 -86203148 + AT_rich Low_complexity Low_complexity 1 21 0 3 856 980 113 14 0 chr11 35641514 35641656 -86202200 + B1_Mus1 SINE Alu 5 148 0 3 856 185 108 0 26 chr11 35641662 35641700 -86202156 + (GGGAGA)n Simple_repeat Simple_repeat 6 42 0 3 856 207 100 0 0 chr11 35641755 35641785 -86202071 + (A)n Simple_repeat Simple_repeat 1 30 0 3 856 414 257 19 29 chr11 35641785 35641889 -86201967 - PB1D10 SINE Alu -13 104 2 3 856 559 189 0 0 chr11 35642523 35642618 -86201238 + B1_Mus2 SINE Alu 30 124 -23 3 856 364 204 123 28 chr11 35643307 35643413 -86200443 + PB1D10 SINE Alu 1 116 -1 3 856 335 274 27 0 chr11 35643685 35643758 -86200098 - PB1D7 SINE Alu -10 110 36 3 856 506 267 17 0 chr11 35643769 35643885 -86199971 - PB1D9 SINE Alu -1 119 2 3 856 272 287 55 18 chr11 35644241 35644351 -86199505 - PB1D10 SINE Alu 0 117 4 3 856 284 267 10 62 chr11 35644265 35644361 -86199495 - ID_B1 SINE B4 -55 169 79 3 856 271 205 154 100 chr11 35644600 35644730 -86199126 - ID_B1 SINE B4 -80 144 8 3 856 355 226 142 0 chr11 35644693 35644799 -86199057 - PB1D7 SINE Alu -16 133 13 3 856 239 294 40 48 chr11 35644898 35645023 -86198833 + B1F1 SINE Alu 26 149 0 3 856 268 273 79 11 chr11 35645063 35645152 -86198704 - Tigger9a DNA Tigger -32 700 606 3 856 386 192 66 66 chr11 35645253 35645359 -86198497 + B1_Mur2 SINE Alu 37 142 -7 3 856 678 167 0 0 chr11 35645599 35645707 -86198149 - B1_Mus2 SINE Alu -1 146 39 3 856 180 0 0 0 chr11 35645992 35646012 -86197844 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 856 258 261 9 156 chr11 35646055 35646164 -86197692 + B1F2 SINE Alu 6 98 -51 3 856 186 43 0 0 chr11 35646622 35646645 -86197211 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 856 1113 43 43 7 chr11 35648242 35648382 -86195474 - B1_Mus1 SINE Alu 0 148 4 3 856 271 321 58 74 chr11 35648752 35648873 -86194983 - ID_B1 SINE B4 -25 199 81 3 856 269 269 97 0 chr11 35648881 35648974 -86194882 - MER113A DNA MER1_type -119 195 94 3 856 741 180 167 47 chr11 35648974 35649166 -86194690 + B3 SINE B2 2 216 0 3 856 207 0 0 0 chr11 35649414 35649437 -86194419 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 856 237 234 171 61 chr11 35649444 35649526 -86194330 + B1F SINE Alu 58 148 -1 3 856 312 137 0 0 chr11 35649531 35649582 -86194274 + (A)n Simple_repeat Simple_repeat 1 51 0 3 856 373 210 23 38 chr11 35650139 35650238 -86193618 - ID2 SINE ID -56 96 1 3 856 363 251 10 29 chr11 35650312 35650416 -86193440 - B1_Mur2 SINE Alu -16 133 1 3 856 468 253 81 71 chr11 35650452 35650626 -86193230 + B3A SINE B2 21 193 -2 3 856 1084 200 23 28 chr11 35650707 35650923 -86192933 + B3 SINE B2 2 216 0 3 856 434 276 61 0 chr11 35650980 35651078 -86192778 + PB1D7 SINE Alu 17 120 0 3 856 437 260 9 9 chr11 35651323 35651428 -86192428 - B3A SINE B2 -93 105 1 3 13 955 208 46 0 chr11 35651436 35651633 -86192223 - B3 SINE B2 -6 210 5 3 857 216 186 16 33 chr11 35652436 35652497 -86191359 + T-rich Low_complexity Low_complexity 2 61 0 3 857 251 352 55 0 chr11 35652864 35652955 -86190901 - MER20 DNA MER1_type -62 157 62 3 857 256 330 21 31 chr11 35652920 35652964 -86190892 + ID SINE ID 39 81 -143 3 857 316 304 28 22 chr11 35652964 35653059 -86190797 + PB1 SINE Alu 3 94 -55 3 857 333 0 0 0 chr11 35653073 35653110 -86190746 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 857 183 80 0 0 chr11 35653183 35653208 -86190648 + (CATATA)n Simple_repeat Simple_repeat 6 30 0 3 857 322 247 0 100 chr11 35653248 35653338 -86190518 - ID_B1 SINE B4 -1 223 143 3 857 1024 141 19 86 chr11 35654265 35654442 -86189414 - B2_Mm2 SINE B2 0 195 32 3 857 1684 163 137 104 chr11 35654442 35654874 -86188982 + RLTR41 LTR ERV1 1 446 0 3 857 1024 141 19 86 chr11 35654874 35654905 -86188951 - B2_Mm2 SINE B2 -164 31 1 3 857 363 69 0 100 chr11 35655974 35656011 -86187845 - B2_Mm1a SINE B2 -3 190 161 3 857 306 0 0 0 chr11 35656011 35656045 -86187811 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 857 363 69 0 100 chr11 35656045 35656087 -86187769 - B2_Mm1a SINE B2 -33 160 119 3 857 1376 64 0 46 chr11 35656131 35656168 -86187688 - B2_Mm1a SINE B2 -4 189 161 3 857 360 0 0 0 chr11 35656168 35656208 -86187648 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 857 1376 64 0 46 chr11 35656208 35656367 -86187489 - B2_Mm1a SINE B2 -33 160 2 3 857 671 180 0 8 chr11 35656372 35656501 -86187355 + RMER1B Other Other 925 1052 -14 3 857 857 164 7 0 chr11 35656535 35656675 -86187181 + B1_Mur4 SINE Alu 5 145 -5 4 857 612 62 0 0 chr11 35656678 35656759 -86187097 + (GGA)n Simple_repeat Simple_repeat 3 83 0 4 857 737 261 112 26 chr11 35657036 35657268 -86186588 - B4A SINE B4 -39 253 2 4 857 204 40 0 0 chr11 35657355 35657380 -86186476 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 857 408 241 76 49 chr11 35657400 35657544 -86186312 - RSINE1 SINE B4 -17 148 1 4 857 297 0 0 0 chr11 35658909 35658942 -86184914 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 857 1093 90 39 0 chr11 35658942 35659098 -86184758 - B2_Mm2 SINE B2 -33 162 1 4 857 475 217 75 0 chr11 35659198 35659304 -86184552 - ID_B1 SINE B4 -6 218 105 4 857 317 283 142 0 chr11 35659429 35659549 -86184307 + B1F SINE Alu 2 138 -11 4 857 21 57 0 0 chr11 35659582 35659617 -86184239 + AT_rich Low_complexity Low_complexity 1 35 0 4 857 261 250 107 36 chr11 35659857 35659969 -86183887 + MIR SINE MIR 79 198 -64 4 857 1099 74 0 33 chr11 35659971 35660124 -86183732 + B1_Mus1 SINE Alu 1 148 0 4 857 559 250 139 62 chr11 35660213 35660422 -86183434 + B4A SINE B4 68 292 0 4 857 509 0 16 0 chr11 35660502 35660563 -86183293 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 857 207 203 0 0 chr11 35660579 35660638 -86183218 + A-rich Low_complexity Low_complexity 1 59 0 4 857 232 254 45 0 chr11 35661060 35661127 -86182729 - Tigger7 DNA MER2_type -42 2449 2380 4 857 688 263 98 26 chr11 35661180 35661396 -86182460 - Tigger7 DNA MER2_type -2018 473 241 4 857 772 208 10 87 chr11 35661396 35661591 -86182265 + B3A SINE B2 1 180 -18 4 857 306 67 0 0 chr11 35662499 35662544 -86181312 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 857 443 111 233 93 chr11 35662677 35662806 -86181050 - B2_Mm2 SINE B2 -2 193 47 4 857 1212 111 35 0 chr11 35662853 35663024 -86180832 - B2_Mm1t SINE B2 -14 179 3 4 857 259 211 17 34 chr11 35663090 35663149 -86180707 + ID4 SINE ID 23 80 -3 4 857 316 259 0 124 chr11 35663343 35663440 -86180416 - BC1_Mm scRNA scRNA -63 89 5 4 857 286 253 10 103 chr11 35663504 35663601 -86180255 - PB1D10 SINE Alu -29 88 1 4 857 456 289 7 29 chr11 35663654 35663793 -86180063 - ID_B1 SINE B4 -3 221 86 4 857 1986 238 27 37 chr11 35664042 35664493 -86179363 + RLTR11A2 LTR ERVK 7 453 -74 4 857 2574 63 25 0 chr11 35664493 35664812 -86179044 + ORR1A2 LTR MaLR 1 327 0 4 857 1986 238 27 37 chr11 35664812 35664875 -86178981 + RLTR11A2 LTR ERVK 454 516 -11 4 857 284 271 33 16 chr11 35664895 35664986 -86178870 - PB1 SINE Alu -33 94 3 4 857 765 301 65 24 chr11 35665111 35665384 -86178472 - B4A SINE B4 -1 291 5 4 857 381 200 212 0 chr11 35666176 35666256 -86177600 + PB1D10 SINE Alu 7 103 -14 4 857 225 0 0 0 chr11 35666257 35666282 -86177574 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 857 405 58 0 0 chr11 35666282 35666333 -86177523 + (CCAA)n Simple_repeat Simple_repeat 3 54 0 4 857 220 342 114 24 chr11 35666515 35666638 -86177218 - MIR3 SINE MIR -26 182 49 4 857 246 316 24 37 chr11 35667124 35667206 -86176650 + ID4 SINE ID 3 83 0 4 857 259 292 14 14 chr11 35667211 35667224 -86176632 - B3A SINE B2 0 198 186 4 857 348 83 0 0 chr11 35667224 35667272 -86176584 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 857 259 292 14 14 chr11 35667272 35667331 -86176525 - B3A SINE B2 -13 185 126 4 857 229 231 30 30 chr11 35667447 35667514 -86176342 - LTR39 LTR ERV1 -553 230 164 4 857 238 191 0 21 chr11 35667548 35667596 -86176260 - L1M5 LINE L1 -328 5834 5788 4 857 512 280 89 71 chr11 35667888 35668157 -86175699 - MLT1B LTR MaLR -44 346 73 4 857 388 298 118 33 chr11 35668132 35668144 -86175712 - B4 SINE B4 -60 232 202 4 857 486 147 255 0 chr11 35668144 35668246 -86175610 - B1_Mus2 SINE Alu -6 141 14 4 857 439 202 75 28 chr11 35668168 35668275 -86175581 - MT2B LTR ERVL -343 258 147 4 857 388 298 118 33 chr11 35668275 35668344 -86175512 - B4 SINE B4 -60 201 3 4 857 284 340 136 0 chr11 35668516 35668678 -86175178 - Charlie19a DNA Charlie -49 337 154 4 857 234 136 0 0 chr11 35669115 35669159 -86174697 + (G)n Simple_repeat Simple_repeat 1 44 0 4 857 411 192 41 0 chr11 35669358 35669431 -86174425 - ID4 SINE ID -7 76 1 4 857 316 302 50 96 chr11 35669650 35669848 -86174008 - B3A SINE B2 0 198 10 4 857 721 282 0 24 chr11 35669689 35669856 -86174000 - RSINE1 SINE B4 0 165 3 4 857 458 360 40 75 chr11 35670599 35670697 -86173159 + MER58B DNA MER1_type 6 98 -243 4 857 983 191 14 47 chr11 35670697 35670911 -86172945 - ID_B1 SINE B4 -16 208 2 4 857 458 360 40 75 chr11 35670911 35671160 -86172696 + MER58B DNA MER1_type 99 341 0 4 857 527 234 39 6 chr11 35671320 35671522 -86172334 + L1MA9 LINE L1 5771 5984 -316 4 857 359 240 110 40 chr11 35671631 35671731 -86172125 + B1F2 SINE Alu 43 149 0 4 857 665 113 274 0 chr11 35671835 35671941 -86171915 - B1_Mus1 SINE Alu -9 139 5 4 857 616 168 6 184 chr11 35671969 35672137 -86171719 + B1_Mur2 SINE Alu 3 140 -9 4 857 1671 42 0 0 chr11 35673058 35673251 -86170605 - B2_Mm1a SINE B2 0 193 1 4 857 416 275 0 0 chr11 35673266 35673346 -86170510 - B1F SINE Alu -56 93 14 4 857 283 311 20 65 chr11 35673277 35673418 -86170438 - B4A SINE B4 -125 167 31 4 857 215 103 0 25 chr11 35674064 35674104 -86169752 + (TGGGGG)n Simple_repeat Simple_repeat 4 42 0 4 857 191 239 22 0 chr11 35674155 35674201 -86169655 + MIRc SINE MIR 88 134 -134 4 857 601 179 9 26 chr11 35674549 35674679 -86169177 - B1_Mur3 SINE Alu 0 149 15 4 857 29 0 0 0 chr11 35675071 35675100 -86168756 + AT_rich Low_complexity Low_complexity 1 29 0 4 857 220 213 400 0 chr11 35675503 35675578 -86168278 - PB1 SINE Alu -17 110 6 4 857 258 314 133 31 chr11 35675603 35675614 -86168242 - ID_B1 SINE B4 -7 217 143 4 857 349 253 0 100 chr11 35675614 35675724 -86168132 - B1F SINE Alu -49 100 2 4 857 408 221 175 9 chr11 35675749 35675863 -86167993 - ID_B1 SINE B4 -6 218 86 4 857 182 298 184 88 chr11 35675924 35676038 -86167818 - L2b LINE L2 -32 3343 3219 4 857 318 327 10 0 chr11 35676051 35676152 -86167704 + L1MC LINE L1 5555 5656 -2226 4 857 239 277 45 30 chr11 35676194 35676261 -86167595 - PB1D10 SINE Alu -27 90 23 4 857 375 23 0 0 chr11 35676294 35676338 -86167518 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 857 237 297 29 72 chr11 35678868 35679006 -86164850 + MIR SINE MIR 4 135 -133 4 857 302 283 127 28 chr11 35679211 35679353 -86164503 + MER5A1 DNA MER1_type 11 166 0 4 857 359 303 119 71 chr11 35680176 35680386 -86163470 - MIR SINE MIR -6 262 42 4 857 538 171 0 0 chr11 35680517 35680599 -86163257 - B1_Mur4 SINE Alu -59 91 10 4 857 897 154 0 0 chr11 35681139 35681269 -86162587 - B1_Mur2 SINE Alu -19 130 1 4 857 859 284 10 0 chr11 35681525 35681726 -86162130 - B4 SINE B4 -69 223 21 4 857 1097 103 0 0 chr11 35681838 35681983 -86161873 - B1_Mus1 SINE Alu -1 147 3 4 857 552 128 128 0 chr11 35682758 35682852 -86161004 - B1F2 SINE Alu -9 140 35 4 857 784 200 7 20 chr11 35682983 35683131 -86160725 - B1_Mur1 SINE Alu -3 146 1 4 857 324 257 93 60 chr11 35683133 35683161 -86160695 - B2_Mm1a SINE B2 -5 188 159 4 857 258 32 0 0 chr11 35683161 35683192 -86160664 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 857 549 203 76 42 chr11 35683192 35683345 -86160511 - B3A SINE B2 -35 158 1 4 857 410 318 0 0 chr11 35683405 35683515 -86160341 - RSINE1 SINE B4 -1 164 55 4 857 868 299 112 83 chr11 35684685 35685133 -86158723 + MT2A LTR ERVL 2 462 -71 4 857 927 137 0 0 chr11 35685161 35685300 -86158556 + URR1B DNA MER1_type 83 221 -4 4 857 679 245 52 80 chr11 35685355 35685568 -86158288 + B3 SINE B2 6 212 -4 4 857 368 310 119 17 chr11 35685571 35685748 -86158108 + MIRb SINE MIR 53 247 -21 4 857 207 0 0 0 chr11 35685750 35685773 -86158083 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 857 886 268 22 108 chr11 35685794 35686030 -86157826 - B4 SINE B4 0 292 79 4 857 432 0 0 0 chr11 35686030 35686078 -86157778 + (TCC)n Simple_repeat Simple_repeat 1 48 0 4 857 886 311 93 58 chr11 35686078 35686128 -86157728 - B4 SINE B4 -214 78 48 4 857 513 239 17 60 chr11 35686128 35686165 -86157691 - PB1D10 SINE Alu -1 116 84 4 857 3440 28 5 0 chr11 35686165 35686558 -86157298 + MTA_Mm LTR MaLR 2 396 0 4 857 281 335 132 30 chr11 35686558 35686636 -86157220 - B4 SINE B4 -119 173 91 4 857 372 44 0 81 chr11 35686637 35686711 -86157145 + (AGGGGG)n Simple_repeat Simple_repeat 1 68 0 4 857 290 47 0 44 chr11 35686865 35686910 -86156946 + (AGGGGG)n Simple_repeat Simple_repeat 6 48 0 4 857 346 259 74 41 chr11 35688278 35688399 -86155457 + MIRc SINE MIR 22 146 -122 4 857 273 119 0 0 chr11 35688463 35688505 -86155351 + (T)n Simple_repeat Simple_repeat 1 42 0 4 857 281 346 27 27 chr11 35688519 35688629 -86155227 - ID_B1 SINE B4 -39 185 76 4 857 192 170 78 78 chr11 35688895 35688946 -86154910 + L2b LINE L2 3320 3370 -5 4 857 204 390 72 22 chr11 35690528 35690667 -86153189 - L2b LINE L2 -1 3374 3229 4 857 288 0 0 0 chr11 35690703 35690735 -86153121 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 857 359 298 31 62 chr11 35690792 35690921 -86152935 + MLT1J2 LTR MaLR 24 148 -300 4 857 423 114 45 0 chr11 35691159 35691247 -86152609 + GA-rich Low_complexity Low_complexity 4 95 0 4 857 182 333 0 16 chr11 35692086 35692147 -86151709 + MER5A DNA MER1_type 45 104 -85 4 857 376 225 16 0 chr11 35692313 35692442 -86151414 + GA-rich Low_complexity Low_complexity 1 131 0 5 857 198 0 0 0 chr11 35692484 35692506 -86151350 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 5 857 234 220 290 11 chr11 35692802 35692907 -86150949 + MIR SINE MIR 38 151 -125 5 857 213 39 0 0 chr11 35692975 35693001 -86150855 + (A)n Simple_repeat Simple_repeat 1 26 0 5 857 821 299 116 36 chr11 35693939 35694405 -86149451 + L1MA6 LINE L1 5798 6300 0 5 857 267 31 0 0 chr11 35694551 35694583 -86149273 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 857 518 0 16 0 chr11 35694583 35694644 -86149212 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 857 1598 241 54 11 chr11 35694755 35695104 -86148752 + ORR1D2 LTR MaLR 7 370 0 5 857 219 220 0 0 chr11 35695172 35695222 -86148634 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 5 857 402 240 13 0 chr11 35695474 35695567 -86148289 + ID4_ SINE ID 11 104 -48 5 857 195 129 0 0 chr11 35695945 35695976 -86147880 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 857 324 278 0 14 chr11 35695993 35696066 -86147790 - RSINE1 SINE B4 -91 74 3 5 857 251 231 91 15 chr11 35697863 35697929 -86145927 + MIRm SINE MIR 110 180 -96 5 857 251 203 80 58 chr11 35699121 35699229 -86144627 + PB1D10 SINE Alu 32 142 -7 5 857 450 349 35 15 chr11 35699284 35699485 -86144371 + MLT1K LTR MaLR 280 484 -111 5 857 21 0 0 0 chr11 35699891 35699912 -86143944 + AT_rich Low_complexity Low_complexity 1 21 0 5 857 1647 37 0 0 chr11 35699915 35700105 -86143751 + B2_Mm1a SINE B2 2 191 -2 5 857 683 246 27 14 chr11 35700128 35700276 -86143580 - RSINE1 SINE B4 0 165 16 5 857 400 301 92 35 chr11 35700546 35700687 -86143169 + RSINE1 SINE B4 2 150 -15 5 857 239 289 77 0 chr11 35700751 35700803 -86143053 + ID4_ SINE ID 14 69 -14 5 857 220 276 21 75 chr11 35700816 35700910 -86142946 + B1F SINE Alu 58 146 -3 5 857 263 239 127 0 chr11 35700933 35701004 -86142852 + ID SINE ID 5 84 -140 5 857 219 340 62 27 chr11 35701157 35701269 -86142587 + MIRb SINE MIR 15 130 -138 5 857 781 156 74 0 chr11 35701338 35701473 -86142383 + B1_Mur4 SINE Alu 5 149 -1 5 857 658 224 16 8 chr11 35702958 35703084 -86140772 - B3 SINE B2 -67 149 23 5 857 828 152 79 7 chr11 35703078 35703230 -86140626 + MTC LTR MaLR 20 182 -239 5 857 1297 161 13 13 chr11 35703318 35703544 -86140312 + MTC LTR MaLR 194 419 -2 5 857 185 301 27 27 chr11 35703877 35703952 -86139904 + MIRb SINE MIR 19 93 -175 5 857 277 321 108 36 chr11 35704133 35704272 -86139584 + MIRb SINE MIR 2 150 -118 5 857 369 0 0 0 chr11 35704275 35704316 -86139540 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 857 240 374 68 7 chr11 35705484 35705573 -86138283 - MER20 DNA MER1_type -62 157 64 5 857 373 260 95 9 chr11 35705573 35705678 -86138178 + PB1D9 SINE Alu 2 115 -5 5 857 240 374 68 7 chr11 35705678 35705736 -86138120 - MER20 DNA MER1_type -156 63 2 5 857 276 269 15 0 chr11 35706272 35706339 -86137517 - ID4 SINE ID 0 83 16 5 857 252 0 0 0 chr11 35707293 35707321 -86136535 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 857 847 175 220 0 chr11 35707673 35707850 -86136006 - B3 SINE B2 0 216 1 5 857 639 48 0 0 chr11 35707855 35707938 -86135918 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 857 302 222 27 27 chr11 35708476 35708550 -86135306 + ID4_ SINE ID 10 83 0 5 857 255 311 159 12 chr11 35709255 35709418 -86134438 + MIRb SINE MIR 56 242 -26 5 857 207 311 167 0 chr11 35709563 35709653 -86134203 - MIR SINE MIR -121 141 37 5 857 301 264 42 0 chr11 35710571 35710643 -86133213 + MamRep137 DNA TcMar? 161 235 -209 5 857 237 382 56 64 chr11 35711371 35711620 -86132236 + MER102a DNA MER1_type 43 289 -41 5 857 283 292 52 10 chr11 35711676 35711773 -86132083 + MIRb SINE MIR 99 199 -69 5 857 214 278 131 101 chr11 35711839 35712007 -86131849 + MIRb SINE MIR 96 268 0 5 857 234 246 0 0 chr11 35712289 35712350 -86131506 + L1M5 LINE L1 5728 5788 -336 5 857 905 155 0 27 chr11 35713372 35713518 -86130338 + B1_Mur4 SINE Alu 2 143 -7 5 857 1425 88 0 30 chr11 35714274 35714474 -86129382 - B2_Mm2 SINE B2 -1 194 1 5 857 363 279 26 0 chr11 35715020 35715110 -86128746 + B1F1 SINE Alu 1 92 -57 5 857 1062 126 5 52 chr11 35715391 35715584 -86128272 - Lx LINE L1 -284 6370 6187 5 857 213 65 0 0 chr11 35715690 35715721 -86128135 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 857 225 0 0 0 chr11 35715721 35715746 -86128110 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 857 275 325 64 76 chr11 35715794 35716214 -86127642 - HAL1 LINE L1 -117 2390 1976 5 857 917 320 87 25 chr11 35716323 35717003 -86126853 - HAL1 LINE L1 -779 1728 1007 5 857 383 370 53 45 chr11 35717152 35717418 -86126438 - HAL1 LINE L1 -1752 755 488 5 857 1383 187 164 47 chr11 35717660 35717675 -86126181 - MTC LTR MaLR -18 403 392 5 857 225 0 0 0 chr11 35717675 35717700 -86126156 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5 857 1383 187 164 47 chr11 35717700 35718044 -86125812 - MTC LTR MaLR -30 391 2 5 857 21 0 0 0 chr11 35718110 35718131 -86125725 + AT_rich Low_complexity Low_complexity 1 21 0 5 857 200 161 0 0 chr11 35718442 35718473 -86125383 + L2b LINE L2 3333 3363 -12 5 857 758 222 20 20 chr11 35719056 35719203 -86124653 - B1_Mur1 SINE Alu -1 148 2 5 857 189 216 176 0 chr11 35719508 35719582 -86124274 - MIR SINE MIR -170 92 6 5 857 647 187 82 7 chr11 35719585 35719720 -86124136 + B1_Mur1 SINE Alu 2 146 -3 5 857 213 328 33 0 chr11 35719728 35719789 -86124067 + B4A SINE B4 65 127 -165 5 857 337 268 0 180 chr11 35719753 35719903 -86123953 + B3 SINE B2 81 203 -13 5 857 269 239 0 0 chr11 35719995 35720041 -86123815 + RSINE1 SINE B4 108 153 -12 5 857 475 282 117 49 chr11 35720168 35720373 -86123483 + MER20 DNA MER1_type 1 219 0 5 857 287 297 0 0 chr11 35720679 35720743 -86123113 - ID4_ SINE ID -5 78 15 5 857 383 227 34 11 chr11 35720791 35720880 -86122976 - B1F1 SINE Alu -49 100 10 5 857 2033 67 0 155 chr11 35721597 35721685 -86122171 - ORR1A2 LTR MaLR 0 327 282 5 857 1058 102 0 26 chr11 35721685 35721836 -86122020 - B1_Mus1 SINE Alu 0 148 2 5 857 2033 67 0 155 chr11 35721836 35722102 -86121754 - ORR1A2 LTR MaLR -46 281 28 5 857 686 321 86 38 chr11 35722140 35722454 -86121402 + MLT1A LTR MaLR 26 354 -20 5 857 1188 193 5 0 chr11 35722684 35722902 -86120954 + L1_Mur3 LINE L1 5500 5718 -162 5 857 497 117 39 0 chr11 35722902 35722979 -86120877 + B2_Mm2 SINE B2 109 188 -7 5 857 225 207 44 33 chr11 35723012 35723102 -86120754 - L1MB3 LINE L1 -102 6081 5991 5 857 532 254 198 42 chr11 35723231 35723354 -86120502 + B4A SINE B4 1 121 -171 5 857 180 0 0 0 chr11 35723354 35723374 -86120482 + (G)n Simple_repeat Simple_repeat 1 20 0 5 857 532 254 198 42 chr11 35723374 35723488 -86120368 + B4A SINE B4 122 275 -17 5 857 348 298 82 118 chr11 35724444 35724599 -86119257 - L1M5 LINE L1 -846 5300 5166 5 857 504 0 0 0 chr11 35724599 35724655 -86119201 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 857 348 298 82 118 chr11 35724655 35724769 -86119087 - L1M5 LINE L1 -981 5165 5042 5 857 322 232 23 68 chr11 35724946 35725111 -86118745 - L1M5 LINE L1 -1088 5058 4910 5 857 211 267 67 0 chr11 35725548 35725608 -86118248 - ID_B1 SINE B4 -75 149 86 5 857 2153 145 164 9 chr11 35725835 35726267 -86117589 + Lx9 LINE L1 6576 7074 -570 5 857 1811 189 94 5 chr11 35726268 35726651 -86117205 + MTD LTR MaLR 3 419 0 5 857 480 62 0 0 chr11 35726890 35726954 -86116902 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 857 271 349 102 8 chr11 35727595 35727607 -86116249 - ID_B1 SINE B4 -7 217 82 5 857 377 275 62 27 chr11 35727607 35727719 -86116137 - PB1D10 SINE Alu -33 116 1 5 857 223 268 82 52 chr11 35728966 35729100 -86114756 + MIR3 SINE MIR 49 186 -22 5 857 241 186 0 0 chr11 35729654 35729697 -86114159 - RSINE1 SINE B4 -30 135 93 5 857 349 260 67 59 chr11 35730617 35730752 -86113104 + MIRb SINE MIR 85 220 -48 5 857 422 293 74 78 chr11 35730805 35731075 -86112781 + B4 SINE B4 1 269 -23 5 857 503 250 8 17 chr11 35731170 35731288 -86112568 - PB1D10 SINE Alu 0 117 1 5 857 641 282 71 9 chr11 35731399 35731610 -86112246 + ID_B1 SINE B4 1 224 0 5 857 549 236 0 56 chr11 35731613 35731805 -86112051 + B1_Mur2 SINE Alu 1 149 0 5 857 627 281 48 51 chr11 35732234 35732624 -86111232 + RMER10A LTR ERVL 1 442 0 5 857 265 221 15 0 chr11 35733149 35733285 -86110571 + CT-rich Low_complexity Low_complexity 1 137 0 5 857 206 316 115 60 chr11 35734451 35734633 -86109223 - L2a LINE L2 -228 3198 3007 5 857 234 0 0 0 chr11 35734660 35734686 -86109170 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 857 550 281 16 0 chr11 35735765 35735893 -86107963 + RSINE1 SINE B4 3 132 -33 5 857 396 267 20 10 chr11 35736678 35736780 -86107076 + MIR SINE MIR 5 107 -155 5 857 355 247 67 0 chr11 35736812 35736901 -86106955 - MIRb SINE MIR -15 253 159 5 857 205 346 134 8 chr11 35737046 35737180 -86106676 - MIR3 SINE MIR -10 198 48 5 857 330 340 0 39 chr11 35738125 35738229 -86105627 + PB1D10 SINE Alu 1 100 -17 5 857 588 281 120 42 chr11 35738250 35738491 -86105365 + B4A SINE B4 2 261 -31 5 857 580 171 415 0 chr11 35738822 35738974 -86104882 - B3 SINE B2 0 216 2 5 857 729 309 29 41 chr11 35739035 35739349 -86104507 + Kanga1b DNA Tc2 81 390 -389 5 857 239 284 35 69 chr11 35739550 35739576 -86104280 + PB1D10 SINE Alu 16 99 -18 5 857 271 179 0 82 chr11 35739576 35739637 -86104219 + ID_B1 SINE B4 151 206 -18 5 857 354 253 0 12 chr11 35739795 35739875 -86103981 - MTE-int LTR MaLR -229 1351 1273 6 857 1347 232 102 42 chr11 35739891 35740273 -86103583 - MTD LTR MaLR -14 405 1 6 857 703 283 6 35 chr11 35740277 35740449 -86103407 - MTE-int LTR MaLR -317 1263 1097 6 857 198 0 0 0 chr11 35740457 35740479 -86103377 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 857 305 216 139 56 chr11 35742301 35742409 -86101447 - PB1D10 SINE Alu 0 117 1 6 857 1293 205 136 13 chr11 35742723 35743039 -86100817 + ORR1D2 LTR MaLR 14 368 -2 6 857 1265 41 0 0 chr11 35743595 35743741 -86100115 - B1_Mm SINE Alu 0 147 2 6 857 219 242 116 0 chr11 35745303 35745398 -86098458 + L2b LINE L2 3047 3152 -223 6 857 333 0 0 0 chr11 35746031 35746068 -86097788 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 857 256 263 150 10 chr11 35746164 35746264 -86097592 + MIRb SINE MIR 1 114 -154 6 857 380 279 0 0 chr11 35746496 35746582 -86097274 - Tigger7 DNA MER2_type 0 2491 2406 6 857 414 0 0 0 chr11 35746612 35746658 -86097198 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 857 231 61 0 0 chr11 35747539 35747572 -86096284 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 857 185 234 21 0 chr11 35747592 35747639 -86096217 + MIRm SINE MIR 65 112 -164 6 857 200 390 70 16 chr11 35747741 35747926 -86095930 + L2b LINE L2 3119 3313 -62 6 857 388 221 12 1 chr11 35747981 35748078 -86095778 + B1F SINE Alu 7 143 -6 6 857 339 169 0 84 chr11 35748016 35748087 -86095769 + ID_B1 SINE B4 160 224 0 6 857 575 264 253 36 chr11 35748472 35748743 -86095113 - MTE2b LTR MaLR -47 332 3 6 857 771 155 62 0 chr11 35749941 35750070 -86093786 + B1_Mus2 SINE Alu 5 141 -6 6 857 201 94 0 0 chr11 35750071 35750103 -86093753 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 6 857 233 339 8 43 chr11 35750159 35750276 -86093580 - MIRb SINE MIR -33 235 123 6 857 256 333 61 41 chr11 35751641 35751828 -86092028 - MIR SINE MIR -53 215 20 6 857 508 224 0 41 chr11 35751991 35752112 -86091744 - PB1D10 SINE Alu -1 116 1 6 857 280 215 50 22 chr11 35752735 35752840 -86091016 + MIRc SINE MIR 79 192 -70 6 857 816 242 22 54 chr11 35753363 35753586 -86090270 + B3 SINE B2 1 216 0 6 857 937 143 1 32 chr11 35755113 35755265 -86088591 - B1_Mur4 SINE Alu -1 149 4 6 857 278 329 110 0 chr11 35755479 35755506 -86088350 + B4A SINE B4 51 86 -206 6 857 340 333 56 0 chr11 35755506 35755596 -86088260 + PB1D10 SINE Alu 2 96 -21 6 857 205 200 0 24 chr11 35755602 35755643 -86088213 + GA-rich Low_complexity Low_complexity 2 41 0 6 857 294 253 12 0 chr11 35755714 35755797 -86088059 + L1MB8 LINE L1 5741 5824 -354 6 857 705 203 48 32 chr11 35755805 35755999 -86087857 + B3 SINE B2 2 195 0 6 857 366 327 29 9 chr11 35756108 35756213 -86087643 + B1F SINE Alu 7 113 -36 6 857 237 364 24 41 chr11 35756213 35756231 -86087625 + ID_B1 SINE B4 88 208 -16 6 857 656 298 30 66 chr11 35756236 35756467 -86087389 + B4A SINE B4 2 228 -64 6 857 454 174 451 0 chr11 35756467 35756611 -86087245 + B3 SINE B2 1 209 -7 6 857 656 298 30 66 chr11 35756611 35756630 -86087226 + B4A SINE B4 229 244 -48 6 857 408 320 76 51 chr11 35756630 35756788 -86087068 + RSINE1 SINE B4 4 165 0 6 857 656 298 30 66 chr11 35756788 35756838 -86087018 + B4A SINE B4 245 292 0 6 857 252 0 0 0 chr11 35756966 35756994 -86086862 + (TAA)n Simple_repeat Simple_repeat 2 29 0 6 857 376 374 42 18 chr11 35757064 35757230 -86086626 + L1MB8 LINE L1 5976 6145 -33 6 857 742 196 7 28 chr11 35757793 35757935 -86085921 + B1_Mur3 SINE Alu 10 148 -1 6 857 230 286 182 0 chr11 35758059 35758136 -86085720 - MIR SINE MIR -112 150 60 6 857 464 210 39 20 chr11 35758370 35758472 -86085384 - B1_Mur1 SINE Alu -15 134 31 6 857 285 29 0 0 chr11 35758545 35758579 -86085277 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 857 707 0 12 0 chr11 35758598 35758681 -86085175 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 857 235 252 51 39 chr11 35758681 35758765 -86085091 - B1F SINE Alu -21 128 7 6 857 573 238 66 72 chr11 35759063 35759244 -86084612 - MER20 DNA MER1_type 0 219 40 6 857 1075 144 6 17 chr11 35759294 35759470 -86084386 - URR1A DNA MER1_type 0 226 53 6 857 232 238 0 0 chr11 35759629 35759671 -86084185 - MER46C DNA MER2_type -18 320 279 6 857 517 264 18 66 chr11 35759758 35759924 -86083932 + RSINE1 SINE B4 5 162 -3 6 857 846 66 2 2 chr11 35760011 35760127 -86083729 - B2_Mm2 SINE B2 -76 117 2 6 857 444 240 35 0 chr11 35760294 35760395 -86083461 - B1F SINE Alu 0 117 14 6 857 467 247 104 22 chr11 35760435 35760617 -86083239 + B3A SINE B2 2 198 0 6 857 192 40 0 0 chr11 35760630 35760655 -86083201 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 857 635 317 132 4 chr11 35760869 35761040 -86082816 + MTEb LTR MaLR 7 196 -183 6 857 243 0 0 0 chr11 35761040 35761067 -86082789 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 857 635 317 132 4 chr11 35761067 35761123 -86082733 + MTEb LTR MaLR 197 262 -117 6 857 256 224 21 86 chr11 35761338 35761431 -86082425 - MIR3 SINE MIR -30 178 92 6 857 208 303 123 58 chr11 35761630 35761784 -86082072 + MIRb SINE MIR 1 164 -104 6 857 228 308 85 8 chr11 35762520 35762638 -86081218 - L2c LINE L2 -226 3161 3035 6 857 792 248 7 0 chr11 35762773 35762926 -86080930 + B3A SINE B2 1 154 -44 6 857 222 118 0 0 chr11 35762926 35762960 -86080896 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 857 332 206 16 0 chr11 35763135 35763198 -86080658 - RSINE1 SINE B4 -100 65 2 6 857 241 295 0 0 chr11 35763296 35763357 -86080499 + ID SINE ID 25 85 -139 6 857 280 183 16 32 chr11 35763622 35763684 -86080172 + ID4_ SINE ID 4 64 -19 6 857 340 233 0 52 chr11 35763689 35763766 -86080090 + ID_B1 SINE B4 149 221 -3 6 857 300 271 33 56 chr11 35764069 35764159 -86079697 - PB1D10 SINE Alu -29 88 1 6 857 693 216 79 104 chr11 35765548 35765750 -86078106 + B3A SINE B2 2 198 0 6 857 928 122 23 0 chr11 35765755 35765886 -86077970 + B1_Mus1 SINE Alu 1 134 -14 6 857 330 87 0 0 chr11 35765894 35765940 -86077916 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 6 857 777 51 0 0 chr11 35766030 35766128 -86077728 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 6 857 694 129 16 57 chr11 35766128 35766251 -86077605 - PB1D9 SINE Alu -2 118 1 6 857 535 200 150 0 chr11 35767739 35767807 -86076049 + ID SINE ID 1 86 -138 6 857 268 260 83 46 chr11 35767807 35767916 -86075940 + PB1D10 SINE Alu 4 116 -1 6 857 358 312 244 26 chr11 35768397 35768627 -86075229 - MTD LTR MaLR -135 284 5 6 857 234 266 0 15 chr11 35768666 35768731 -86075125 + GA-rich Low_complexity Low_complexity 3 66 0 6 857 278 271 73 48 chr11 35769598 35769722 -86074134 - ID4_ SINE ID -23 129 3 6 857 320 178 411 0 chr11 35769758 35769831 -86074025 - PB1D10 SINE Alu -12 105 3 6 857 315 244 0 95 chr11 35770057 35770152 -86073704 + PB1D10 SINE Alu 32 117 0 6 857 250 313 16 83 chr11 35770233 35770648 -86073208 - L1MDa LINE L1 -4530 2027 1630 6 857 468 0 0 0 chr11 35770741 35770793 -86073063 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 857 647 247 13 33 chr11 35770796 35770947 -86072909 - B3A SINE B2 -45 153 6 6 857 231 36 0 0 chr11 35770966 35770994 -86072862 + (TCCCC)n Simple_repeat Simple_repeat 5 32 0 6 857 221 263 105 0 chr11 35770994 35771051 -86072805 - B1_Mur3 SINE Alu -4 145 83 6 857 298 272 18 97 chr11 35771465 35771579 -86072277 + MLT1J LTR MaLR 297 401 -111 6 857 223 268 113 0 chr11 35771611 35771682 -86072174 - PB1D10 SINE Alu -17 100 22 6 857 400 385 60 0 chr11 35771927 35772109 -86071747 + MER58A DNA MER1_type 17 209 -15 6 857 739 258 1 44 chr11 35772230 35772440 -86071416 + B3A SINE B2 16 215 -1 6 857 325 296 96 34 chr11 35772444 35772622 -86071234 + L1MEe LINE L1 648 836 -4018 6 857 554 321 0 6 chr11 35772633 35772790 -86071066 + RSINE1 SINE B4 10 165 0 6 857 545 160 9 65 chr11 35773518 35773625 -86070231 + B1_Mm SINE Alu 40 140 -7 6 857 441 0 0 0 chr11 35773656 35773705 -86070151 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 6 857 793 302 44 0 chr11 35773705 35774026 -86069830 + L1MB2 LINE L1 5693 6027 -144 6 857 563 43 0 0 chr11 35774223 35774292 -86069564 + B2_Mm2 SINE B2 6 74 -121 6 857 239 189 88 75 chr11 35774292 35774303 -86069553 + B4 SINE B4 6 86 -206 6 857 421 220 57 57 chr11 35774374 35774480 -86069376 + ID_B1 SINE B4 99 204 -20 6 857 209 176 0 0 chr11 35774724 35774758 -86069098 + (TCCA)n Simple_repeat Simple_repeat 2 35 0 6 857 407 212 12 48 chr11 35774777 35774861 -86068995 - PB1D7 SINE Alu -39 81 1 6 857 253 256 32 95 chr11 35775485 35775580 -86068276 + MIR SINE MIR 58 146 -62 6 857 385 255 37 19 chr11 35776173 35776281 -86067575 + PB1D10 SINE Alu 3 112 -5 6 857 664 249 68 36 chr11 35776288 35776480 -86067376 + ID_B1 SINE B4 1 198 -26 6 857 29 0 0 0 chr11 35778179 35778208 -86065648 + AT_rich Low_complexity Low_complexity 1 29 0 6 857 222 318 153 15 chr11 35778900 35778921 -86064935 - B1F1 SINE Alu 0 149 88 6 857 752 238 60 11 chr11 35778921 35778947 -86064909 - ID_B1 SINE B4 -26 198 166 6 857 1144 64 19 0 chr11 35778947 35779212 -86064644 + (TCTA)n Simple_repeat Simple_repeat 1 270 0 6 857 222 318 153 15 chr11 35779212 35779293 -86064563 - B1F1 SINE Alu -62 87 4 6 857 752 238 60 11 chr11 35779293 35779366 -86064490 - ID_B1 SINE B4 -59 165 10 6 857 236 325 0 0 chr11 35780036 35780113 -86063743 + L1MC4 LINE L1 7959 8035 -7 6 857 271 289 53 0 chr11 35780167 35780243 -86063613 - ID4 SINE ID -2 81 2 7 857 856 215 209 8 chr11 35780313 35780552 -86063304 - B4A SINE B4 -4 288 2 7 857 826 185 0 27 chr11 35780600 35780750 -86063106 + B1_Mur2 SINE Alu 3 148 -1 7 857 419 349 0 0 chr11 35780757 35780866 -86062990 + PB1D7 SINE Alu 9 117 -3 7 857 1360 50 66 0 chr11 35780885 35781067 -86062789 + B2_Mm2 SINE B2 2 195 0 7 857 1017 67 0 0 chr11 35782336 35782470 -86061386 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 7 857 531 182 63 9 chr11 35782488 35782599 -86061257 - PB1D10 SINE Alu 0 117 1 7 857 225 266 78 78 chr11 35782522 35782624 -86061232 - MT2B2 LTR ERVL -343 241 140 7 858 291 365 32 24 chr11 35783143 35783373 -86060483 + MIR SINE MIR 28 257 -5 7 858 1325 139 62 14 chr11 35784035 35784246 -86059610 + URR1B DNA MER1_type 5 225 0 7 858 335 241 50 59 chr11 35784294 35784413 -86059443 + L2a LINE L2 3303 3420 -6 7 858 207 237 60 70 chr11 35785293 35785393 -86058463 - MIRc SINE MIR -42 226 128 7 858 210 37 0 0 chr11 35785867 35785894 -86057962 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 7 858 201 0 122 0 chr11 35786727 35786776 -86057080 + (CAGC)n Simple_repeat Simple_repeat 4 58 0 7 858 315 269 89 36 chr11 35787427 35787539 -86056317 + MIRb SINE MIR 109 226 -42 7 858 402 291 56 106 chr11 35787661 35787803 -86056053 - PB1D10 SINE Alu -12 135 1 7 858 312 284 128 0 chr11 35788264 35788373 -86055483 + MIR3 SINE MIR 61 183 -25 7 858 684 193 238 6 chr11 35788903 35789075 -86054781 + B3 SINE B2 1 212 -4 7 858 222 37 0 0 chr11 35789086 35789113 -86054743 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 7 858 303 295 0 13 chr11 35789189 35789268 -86054588 + ID2 SINE ID 5 82 -1 7 858 456 255 88 0 chr11 35791802 35791904 -86051952 + PB1D9 SINE Alu 1 111 -9 7 858 369 311 20 13 chr11 35791946 35792099 -86051757 + RSINE1 SINE B4 5 158 -7 7 858 255 61 0 0 chr11 35792377 35792410 -86051446 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 7 858 21 36 0 0 chr11 35793812 35793840 -86050016 + GC_rich Low_complexity Low_complexity 1 28 0 7 858 225 0 0 0 chr11 35793915 35793940 -86049916 + (CCG)n Simple_repeat Simple_repeat 2 26 0 7 858 360 263 94 10 chr11 35794528 35794624 -86049232 + PB1 SINE Alu 2 105 -22 7 858 236 264 57 90 chr11 35794653 35794781 -86049075 - RMER17D2 LTR ERVK -330 479 346 7 858 591 53 0 0 chr11 35794781 35794856 -86049000 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 7 858 236 264 57 90 chr11 35794856 35795027 -86048829 - RMER17D2 LTR ERVK -464 345 190 7 858 298 217 109 109 chr11 35795380 35795499 -86048357 - PB1D7 SINE Alu 0 120 2 7 858 312 230 44 33 chr11 35795523 35795613 -86048243 - MIR SINE MIR -52 210 120 7 858 333 217 88 0 chr11 35795731 35795837 -86048019 - PB1D10 SINE Alu -3 114 1 7 858 1152 82 0 0 chr11 35795860 35796007 -86047849 + B1_Mus2 SINE Alu 1 147 0 7 858 195 162 0 0 chr11 35796007 35796044 -86047812 + A-rich Low_complexity Low_complexity 1 37 0 7 858 279 0 0 0 chr11 35796220 35796251 -86047605 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 858 1342 35 123 0 chr11 35796742 35796912 -86046944 - B2_Mm1a SINE B2 -2 191 1 7 858 1363 89 6 0 chr11 35796917 35797097 -86046759 - B2_Mm1a SINE B2 -9 184 4 7 858 1315 87 6 0 chr11 35797179 35797351 -86046505 + B2_Mm1a SINE B2 3 175 -18 7 858 612 212 126 29 chr11 35797439 35797614 -86046242 + B3A SINE B2 1 192 -6 7 858 660 82 336 0 chr11 35797936 35798046 -86045810 + B1_Mus1 SINE Alu 2 148 0 7 858 1196 54 0 20 chr11 35798124 35798274 -86045582 - B1_Mus2 SINE Alu 0 147 1 7 858 726 243 62 75 chr11 35798490 35798717 -86045139 - ID_B1 SINE B4 0 224 1 7 858 788 30 10 0 chr11 35799057 35799156 -86044700 + (GA)n Simple_repeat Simple_repeat 2 101 0 7 858 263 239 187 33 chr11 35799929 35800020 -86043836 - PB1D9 SINE Alu -6 114 10 7 858 849 295 68 119 chr11 35800017 35800402 -86043454 + MTE2a LTR MaLR 15 379 0 7 858 559 211 130 0 chr11 35800475 35800598 -86043258 + B1_Mur1 SINE Alu 1 139 -10 7 858 549 0 0 0 chr11 35800781 35800842 -86043014 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 7 858 245 214 254 14 chr11 35800889 35800960 -86042896 + MTEb LTR MaLR 278 365 -14 7 858 1140 226 9 5 chr11 35801293 35801511 -86042345 - URR1B DNA MER1_type 0 225 7 7 858 231 278 149 19 chr11 35801770 35801924 -86041932 - L1MDa LINE L1 -4890 1743 1570 7 858 376 284 80 0 chr11 35801984 35802072 -86041784 - PB1D10 SINE Alu -20 97 3 7 858 252 156 78 0 chr11 35802075 35802139 -86041717 - L1MDa LINE L1 -5173 1460 1392 7 858 477 287 150 20 chr11 35802106 35802412 -86041444 - L1MDa LINE L1 -6267 366 21 7 858 27 0 0 0 chr11 35802674 35802701 -86041155 + AT_rich Low_complexity Low_complexity 1 27 0 7 858 891 148 14 0 chr11 35802709 35802847 -86041009 + B1_Mur3 SINE Alu 9 142 -7 7 858 180 0 0 0 chr11 35802902 35802922 -86040934 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 858 408 71 0 0 chr11 35802925 35802981 -86040875 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 858 268 242 0 75 chr11 35803065 35803132 -86040724 - B3A SINE B2 -132 66 5 7 858 477 0 0 0 chr11 35803856 35803909 -86039947 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 858 511 261 0 18 chr11 35805967 35806080 -86037776 + PB1 SINE Alu 10 120 -7 7 858 234 91 0 0 chr11 35806190 35806223 -86037633 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 858 406 305 0 50 chr11 35806226 35806326 -86037530 - RSINE1 SINE B4 -20 145 51 7 858 968 112 154 0 chr11 35806328 35806497 -86037359 + B2_Mm2 SINE B2 1 195 0 7 858 313 254 17 0 chr11 35806520 35806579 -86037277 - RSINE1 SINE B4 -103 62 3 7 858 436 245 40 20 chr11 35806601 35806701 -86037155 - PB1D7 SINE Alu -13 107 6 7 858 239 351 86 35 chr11 35807207 35807405 -86036451 - LTR16A LTR ERVL -59 392 185 7 858 998 236 73 70 chr11 35807630 35807903 -86035953 - B4 SINE B4 -4 288 15 7 858 292 244 48 71 chr11 35808076 35808160 -86035696 - MER63D DNA AcHobo -677 384 303 7 858 343 336 145 18 chr11 35808403 35808624 -86035232 - L1M5 LINE L1 -2870 3276 3028 7 858 1143 82 0 0 chr11 35808625 35808772 -86035084 - B1_Mus2 SINE Alu 0 147 1 7 858 575 269 33 82 chr11 35808772 35808812 -86035044 - B4 SINE B4 -213 79 49 7 858 265 347 40 40 chr11 35809027 35809177 -86034679 - MIRb SINE MIR -52 216 67 7 858 658 210 189 22 chr11 35809201 35809340 -86034516 + B3 SINE B2 1 163 -53 7 858 342 0 0 0 chr11 35809340 35809378 -86034478 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 858 658 210 189 22 chr11 35809378 35809423 -86034433 + B3 SINE B2 164 216 0 7 858 1199 55 7 0 chr11 35811178 35811323 -86032533 + B1_Mus2 SINE Alu 2 147 0 7 858 227 245 0 117 chr11 35811997 35812108 -86031748 + RMER17A LTR ERVK 455 552 -199 7 858 507 244 0 50 chr11 35812437 35812558 -86031298 + B1F SINE Alu 34 148 -1 7 858 400 226 57 114 chr11 35812730 35812870 -86030986 + MER20 DNA MER1_type 1 132 -87 7 858 314 294 28 0 chr11 35812886 35812995 -86030861 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 7 858 207 0 0 0 chr11 35814530 35814553 -86029303 + (T)n Simple_repeat Simple_repeat 1 23 0 7 858 212 275 42 28 chr11 35814682 35814753 -86029103 - PB1D10 SINE Alu -21 96 25 7 858 313 197 30 15 chr11 35815534 35815601 -86028255 - ID2 SINE ID -9 74 7 7 858 207 0 0 0 chr11 35816161 35816184 -86027672 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 858 285 100 0 0 chr11 35816257 35816307 -86027549 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 7 858 773 236 96 17 chr11 35816546 35816723 -86027133 - B3 SINE B2 -24 192 2 7 858 706 217 22 0 chr11 35816741 35816879 -86026977 - B1_Mur1 SINE Alu 0 149 9 7 858 378 200 0 70 chr11 35816907 35816993 -86026863 - ID2 SINE ID -3 80 1 7 858 860 188 0 3 chr11 35817984 35818350 -86025506 + (CAGA)n Simple_repeat Simple_repeat 1 364 0 7 858 195 263 48 39 chr11 35818411 35818514 -86025342 + L2c LINE L2 3013 3116 -271 7 858 455 260 10 0 chr11 35819216 35819320 -86024536 + ID_B1 SINE B4 109 213 -11 7 858 221 75 0 24 chr11 35819447 35819488 -86024368 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 858 554 230 35 49 chr11 35819586 35819728 -86024128 + B1_Mur3 SINE Alu 2 141 -8 7 858 536 207 73 24 chr11 35819951 35820075 -86023781 - URR1B DNA MER1_type 0 225 96 7 858 21 0 0 0 chr11 35820257 35820278 -86023578 + AT_rich Low_complexity Low_complexity 1 21 0 7 858 210 37 0 0 chr11 35820390 35820417 -86023439 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 858 248 192 0 82 chr11 35821103 35821215 -86022641 + T-rich Low_complexity Low_complexity 1 102 0 7 858 186 43 0 0 chr11 35821276 35821299 -86022557 + (TTCG)n Simple_repeat Simple_repeat 2 24 0 7 858 850 169 164 32 chr11 35824181 35824370 -86019486 - B3 SINE B2 -1 215 2 7 858 293 296 110 12 chr11 35824488 35824652 -86019204 + MIR SINE MIR 80 259 -3 7 858 779 203 172 17 chr11 35824692 35824872 -86018984 - B3 SINE B2 -8 208 1 7 858 201 376 96 0 chr11 35825393 35825518 -86018338 + L2a LINE L2 363 499 -2920 7 858 224 350 60 0 chr11 35825581 35825681 -86018175 + L2a LINE L2 748 853 -2566 7 858 942 53 20 20 chr11 35825791 35825944 -86017912 + (TCCA)n Simple_repeat Simple_repeat 3 155 0 7 858 496 404 16 4 chr11 35825945 35826191 -86017665 + L2a LINE L2 1080 1328 -2091 7 858 359 214 174 8 chr11 35826246 35826378 -86017478 + RLTR21 LTR ERVK 1152 1305 -267 7 858 558 35 23 12 chr11 35826390 35826476 -86017380 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 7 858 411 312 3 0 chr11 35826476 35826587 -86017269 - B1F1 SINE Alu -7 113 1 8 858 396 0 0 0 chr11 35826605 35826649 -86017207 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 858 255 335 172 56 chr11 35826656 35826975 -86016881 + L2a LINE L2 1433 1788 -1631 7 858 284 264 111 19 chr11 35827266 35827374 -86016482 - RSINE1 SINE B4 -44 121 4 8 858 658 261 87 16 chr11 35827628 35827870 -86015986 - L1MB7 LINE L1 -19 6165 5907 8 858 803 121 4 53 chr11 35827900 35828050 -86015806 - B1_Mur4 SINE Alu 0 150 3 8 858 581 0 14 0 chr11 35828052 35828121 -86015735 + (TC)n Simple_repeat Simple_repeat 2 71 0 8 858 541 279 0 43 chr11 35828127 35828288 -86015568 - L1MB7 LINE L1 -357 5817 5664 8 858 547 343 122 48 chr11 35828915 35829583 -86014273 + L2a LINE L2 2615 3335 -91 7 858 738 194 16 0 chr11 35829601 35829730 -86014126 - B1_Mur2 SINE Alu -2 147 17 8 858 253 256 73 0 chr11 35829687 35829769 -86014087 + B3 SINE B2 129 216 0 8 858 277 229 183 99 chr11 35829797 35829928 -86013928 + B1_Mur1 SINE Alu 3 144 -5 8 858 479 200 21 0 chr11 35829930 35830025 -86013831 + L1M2 LINE L1 5710 5806 -485 8 858 959 169 0 0 chr11 35830054 35830202 -86013654 - B1_Mur4 SINE Alu -2 148 1 8 858 227 297 106 20 chr11 35830218 35830369 -86013487 + Lx8 LINE L1 5766 5929 -1544 8 858 1215 102 0 0 chr11 35830472 35830952 -86012904 + (TG)n Simple_repeat Simple_repeat 1 480 0 8 858 48 32 0 0 chr11 35831108 35831170 -86012686 + AT_rich Low_complexity Low_complexity 1 62 0 8 858 854 268 150 0 chr11 35831200 35831454 -86012402 + B4A SINE B4 1 292 0 8 858 376 262 151 0 chr11 35832212 35832338 -86011518 - RSINE1 SINE B4 -17 148 4 8 858 920 169 0 15 chr11 35832489 35832755 -86011101 + CT-rich Low_complexity Low_complexity 1 261 0 8 858 343 290 129 14 chr11 35832764 35832904 -86010952 - HAL1-3A_ME LINE L1 -419 2439 2284 8 858 236 214 0 23 chr11 35832925 35833002 -86010854 + CT-rich Low_complexity Low_complexity 1 75 0 8 858 880 138 12 0 chr11 35833005 35833044 -86010812 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 8 858 1271 64 12 0 chr11 35833044 35833217 -86010639 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 8 858 880 138 12 0 chr11 35833217 35833337 -86010519 + (TCCC)n Simple_repeat Simple_repeat 2 122 0 8 858 723 83 0 0 chr11 35835648 35835756 -86008100 + (TGGA)n Simple_repeat Simple_repeat 1 108 0 8 858 513 0 0 0 chr11 35836035 35836092 -86007764 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 858 981 88 0 0 chr11 35838577 35838714 -86005142 + (TTCC)n Simple_repeat Simple_repeat 4 140 0 8 858 750 101 0 0 chr11 35838716 35838825 -86005031 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 8 858 560 196 0 51 chr11 35838825 35838943 -86004913 - B1_Mur2 SINE Alu -11 138 27 8 858 273 247 110 0 chr11 35839054 35839127 -86004729 - MER5A1 DNA MER1_type -37 129 49 8 858 552 279 71 66 chr11 35839566 35839628 -86004228 - B4A SINE B4 -8 284 219 8 858 258 32 0 0 chr11 35839628 35839659 -86004197 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 8 858 786 175 32 0 chr11 35839659 35839785 -86004071 - B1_Mur1 SINE Alu -10 139 10 8 858 699 231 146 29 chr11 35839798 35840003 -86003853 - B4A SINE B4 -63 229 1 8 858 291 336 96 0 chr11 35841191 35841316 -86002540 - MER91C DNA Tip100 -3 137 1 8 858 743 271 104 9 chr11 35842175 35842395 -86001461 + B4A SINE B4 1 241 -51 8 858 1224 89 0 0 chr11 35842435 35842899 -86000957 + (CA)n Simple_repeat Simple_repeat 1 464 0 8 858 649 241 36 14 chr11 35843368 35843507 -86000349 - B1F SINE Alu 0 149 8 8 858 471 286 80 49 chr11 35843507 35843530 -86000326 - ID_B1 SINE B4 0 224 58 8 858 857 143 207 69 chr11 35843706 35843894 -85999962 - B3 SINE B2 -1 215 2 8 858 210 37 0 0 chr11 35843905 35843932 -85999924 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 858 918 180 0 0 chr11 35843932 35844071 -85999785 - B1_Mus1 SINE Alu -9 139 1 8 858 987 222 63 0 chr11 35844071 35844259 -85999597 - B3 SINE B2 -15 201 1 8 858 243 0 0 0 chr11 35844390 35844417 -85999439 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 858 204 279 87 65 chr11 35846021 35846113 -85997743 + MIRc SINE MIR 45 138 -130 8 858 252 0 0 0 chr11 35846409 35846437 -85997419 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 8 858 288 329 136 40 chr11 35846749 35846926 -85996930 + L2b LINE L2 2957 3150 -225 8 858 306 0 0 0 chr11 35847033 35847067 -85996789 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 858 394 260 18 21 chr11 35847091 35847187 -85996669 + PB1D10 SINE Alu 14 114 -3 8 858 535 245 125 8 chr11 35847584 35847764 -85996092 + B3A SINE B2 3 199 -17 8 858 446 261 41 86 chr11 35848733 35848930 -85994926 + MLT1K LTR MaLR 146 333 -262 8 858 204 102 0 93 chr11 35848951 35848994 -85994862 + C-rich Low_complexity Low_complexity 3 41 0 8 858 230 394 22 28 chr11 35850138 35850318 -85993538 + L2b LINE L2 2704 2882 -537 8 858 241 364 121 0 chr11 35850443 35850583 -85993273 + L2b LINE L2 3059 3215 -160 8 858 254 284 69 51 chr11 35852479 35852606 -85991250 + MIRb SINE MIR 8 128 -140 8 858 711 0 0 0 chr11 35852691 35852770 -85991086 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 858 441 0 0 0 chr11 35855301 35855350 -85988506 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 858 204 225 0 0 chr11 35855640 35855680 -85988176 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 858 235 279 123 19 chr11 35855964 35856070 -85987786 - RMER15 LTR ERVL -248 327 211 8 858 232 362 64 0 chr11 35858301 35858442 -85985414 - MIRb SINE MIR -83 185 36 8 858 702 223 122 0 chr11 35861234 35861422 -85982434 - B3 SINE B2 -5 211 1 8 858 214 354 60 26 chr11 35861663 35861779 -85982077 + MER91A DNA Tip100 76 195 -1 8 858 299 232 30 20 chr11 35862342 35862443 -85981413 + CT-rich Low_complexity Low_complexity 2 103 0 8 858 189 0 0 0 chr11 35863544 35863565 -85980291 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 858 525 254 244 88 chr11 35863574 35863771 -85980085 - B4A SINE B4 -2 290 80 8 858 669 47 0 0 chr11 35863771 35863856 -85980000 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 8 858 525 254 244 88 chr11 35863856 35863908 -85979948 - B4A SINE B4 -213 79 2 8 858 658 0 24 0 chr11 35863931 35864013 -85979843 + (TC)n Simple_repeat Simple_repeat 1 84 0 8 858 1223 145 4 75 chr11 35864534 35864773 -85979083 + URR1B DNA MER1_type 1 222 -3 8 858 570 15 0 0 chr11 35865213 35865280 -85978576 + (TC)n Simple_repeat Simple_repeat 2 68 0 8 858 189 74 0 0 chr11 35866936 35866963 -85976893 + (T)n Simple_repeat Simple_repeat 1 27 0 8 858 435 38 0 0 chr11 35867942 35867995 -85975861 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 858 377 289 27 27 chr11 35868759 35868905 -85974951 + MER117 DNA MER1_type 2 147 -50 8 858 663 342 14 38 chr11 35870466 35870758 -85973098 + Arthur1 DNA Tip100 139 423 -3524 8 858 692 284 143 37 chr11 35870810 35871110 -85972746 + Arthur1 DNA Tip100 3344 3675 -272 8 858 432 243 27 27 chr11 35871122 35871232 -85972624 + ID_B1 SINE B4 115 224 0 8 858 335 330 0 0 chr11 35871466 35871554 -85972302 - 5S rRNA rRNA -32 89 2 8 858 231 78 19 38 chr11 35871603 35871656 -85972200 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 858 537 258 24 24 chr11 35871662 35871789 -85972067 - RSINE1 SINE B4 -16 149 23 8 858 234 352 11 21 chr11 35871818 35871911 -85971945 + Arthur1 DNA Tip100 3856 3947 0 8 858 357 24 0 0 chr11 35872928 35872970 -85970886 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 8 858 380 269 74 42 chr11 35874262 35874334 -85969522 + RLTR21 LTR ERVK 1097 1170 -402 8 858 180 0 0 0 chr11 35874334 35874354 -85969502 + (CATA)n Simple_repeat Simple_repeat 1 20 0 8 858 380 304 66 52 chr11 35874354 35874581 -85969275 + RLTR21 LTR ERVK 1171 1292 -280 8 858 259 329 109 79 chr11 35874651 35874816 -85969040 + MTEa LTR MaLR 15 184 -195 8 858 263 288 63 38 chr11 35874850 35875009 -85968847 + ORR1E LTR MaLR 79 241 -118 8 858 251 286 16 0 chr11 35875193 35875256 -85968600 + CT-rich Low_complexity Low_complexity 2 65 0 8 858 402 324 17 61 chr11 35875333 35875514 -85968342 + L2a LINE L2 2688 2860 -559 8 858 251 353 118 20 chr11 35875576 35875882 -85967974 + L2a LINE L2 2917 3252 -174 8 858 395 312 46 66 chr11 35877910 35878061 -85965795 + MER2 DNA MER2_type 3 150 -195 8 858 939 148 0 7 chr11 35878061 35878204 -85965652 + B1_Mus1 SINE Alu 1 142 -6 8 858 652 143 2 11 chr11 35878268 35878383 -85965473 + B2_Mm2 SINE B2 2 116 -100 8 858 726 306 55 75 chr11 35879048 35879595 -85964261 + L1MC5 LINE L1 6693 7228 -733 8 858 770 94 0 8 chr11 35880235 35880353 -85963503 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 8 858 429 279 0 26 chr11 35880357 35880471 -85963385 - PB1D10 SINE Alu -5 112 2 8 858 376 311 105 14 chr11 35880478 35880687 -85963169 + L1MC5 LINE L1 7609 7836 -125 8 858 180 353 120 36 chr11 35881464 35881740 -85962116 + L2a LINE L2 3045 3343 -83 8 858 252 294 18 38 chr11 35883221 35883326 -85960530 + MIRc SINE MIR 61 158 -104 8 858 519 315 75 37 chr11 35883379 35883567 -85960289 + MER58A DNA MER1_type 26 220 -4 8 858 292 298 48 12 chr11 35884026 35884137 -85959719 + B1F SINE Alu 8 121 -27 8 858 522 0 0 0 chr11 35884258 35884316 -85959540 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 858 553 179 0 31 chr11 35884474 35884572 -85959284 + PB1D10 SINE Alu 13 107 -10 8 858 540 0 0 0 chr11 35884572 35884632 -85959224 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 858 395 240 13 0 chr11 35884643 35884718 -85959138 + ID4 SINE ID 5 80 -3 8 858 410 279 67 0 chr11 35884802 35884906 -85958950 + B1F1 SINE Alu 1 111 -38 8 858 658 298 130 5 chr11 35885013 35885229 -85958627 + Tigger5 DNA MER2_type 2 244 -2162 8 858 183 42 0 0 chr11 35886353 35886377 -85957479 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 858 219 36 0 0 chr11 35886989 35887017 -85956839 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 858 508 162 20 47 chr11 35889126 35889275 -85954581 + CT-rich Low_complexity Low_complexity 4 148 0 8 858 357 300 25 16 chr11 35889279 35889330 -85954526 + polypyrimidine Low_complexity Low_complexity 76 125 0 9 858 1378 23 17 0 chr11 35889330 35889503 -85954353 + (TTCCC)n Simple_repeat Simple_repeat 3 178 0 9 858 357 300 25 16 chr11 35889503 35889573 -85954283 + polypyrimidine Low_complexity Low_complexity 3 75 0 9 858 210 299 159 76 chr11 35889771 35889916 -85953940 + B4 SINE B4 43 199 -93 9 858 314 310 115 39 chr11 35889819 35889923 -85953933 + B1F2 SINE Alu 6 117 -32 9 858 922 236 27 23 chr11 35890316 35890576 -85953280 + L1MA6 LINE L1 6040 6300 0 9 858 623 291 7 14 chr11 35890579 35890722 -85953134 + RSINE1 SINE B4 3 144 -21 9 858 259 287 102 58 chr11 35890947 35891084 -85952772 + RMER17B LTR ERVK 495 637 -321 9 858 303 263 118 0 chr11 35891430 35891506 -85952350 - Kanga11a DNA Tc2 -8 962 878 9 858 442 261 82 39 chr11 35893030 35893195 -85950661 + MLT1A1 LTR MaLR 172 395 -13 9 858 261 273 0 29 chr11 35893493 35893561 -85950295 + L2c LINE L2 3322 3387 0 9 858 33 0 0 0 chr11 35895779 35895812 -85948044 + AT_rich Low_complexity Low_complexity 1 33 0 9 858 515 233 0 37 chr11 35895871 35895978 -85947878 - ID_B1 SINE B4 -8 216 114 9 858 468 0 0 0 chr11 35895987 35896039 -85947817 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 9 858 1205 76 0 0 chr11 35896040 35896198 -85947658 - B2_Mm2 SINE B2 -37 158 1 9 858 287 298 58 51 chr11 35896353 35896491 -85947365 + MIRb SINE MIR 9 147 -121 9 858 347 172 0 33 chr11 35896503 35896563 -85947293 + PB1D9 SINE Alu 2 59 -61 9 858 322 160 0 0 chr11 35896565 35896615 -85947241 + (CAGAGA)n Simple_repeat Simple_repeat 1 50 0 9 858 444 128 0 10 chr11 35896615 35896691 -85947165 + B1_Mur1 SINE Alu 42 111 -9 9 858 183 80 0 0 chr11 35896692 35896717 -85947139 + (CAA)n Simple_repeat Simple_repeat 2 26 0 9 858 324 309 137 27 chr11 35897244 35897427 -85946429 + MER2 DNA MER2_type 4 206 -139 9 858 440 280 204 0 chr11 35897439 35897596 -85946260 - RMER30 DNA MER1_type -7 195 7 9 858 267 316 87 9 chr11 35897612 35897727 -85946129 + MER2 DNA MER2_type 221 344 -1 9 858 456 356 15 0 chr11 35898741 35898873 -85944983 + RSINE1 SINE B4 3 136 -29 9 858 288 364 134 0 chr11 35899746 35899933 -85943923 - FordPrefect_a DNA Tip100 -10 498 287 9 858 199 320 134 45 chr11 35900865 35900999 -85942857 + MIRc SINE MIR 22 167 -101 9 858 245 253 24 96 chr11 35902043 35902126 -85941730 + MER5A1 DNA MER1_type 84 160 -6 9 858 231 291 165 0 chr11 35902770 35902849 -85941007 + RMER30 DNA MER1_type 13 104 -98 9 858 180 0 0 0 chr11 35902855 35902875 -85940981 + (T)n Simple_repeat Simple_repeat 1 20 0 9 858 288 348 35 35 chr11 35903494 35903637 -85940219 - MIRb SINE MIR -91 177 35 9 858 242 288 15 0 chr11 35904687 35904753 -85939103 + MIR SINE MIR 77 143 -65 9 858 546 291 67 83 chr11 35905051 35905351 -85938505 - ORR1E LTR MaLR -1 358 64 9 858 980 241 198 18 chr11 35905722 35906051 -85937805 + MTD LTR MaLR 1 388 -31 9 858 292 311 78 30 chr11 35906608 35906774 -85937082 - L2a LINE L2 -310 3116 2943 9 858 381 289 10 20 chr11 35907435 35907534 -85936322 + MER5A DNA MER1_type 38 135 -54 9 858 350 248 12 15 chr11 35907583 35907685 -85936171 - MIRb SINE MIR -62 200 96 9 858 1868 123 37 12 chr11 35908092 35908413 -85935443 - ORR1A4 LTR MaLR 0 329 1 9 858 403 212 58 48 chr11 35908537 35908641 -85935215 - B1F SINE Alu -2 147 43 9 858 297 344 37 62 chr11 35908625 35908661 -85935195 - B4A SINE B4 -47 245 217 9 858 276 30 0 0 chr11 35908661 35908694 -85935162 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 858 653 234 40 0 chr11 35908694 35908818 -85935038 - ID_B1 SINE B4 -11 213 85 9 858 427 296 0 0 chr11 35909447 35909562 -85934294 - PB1D10 SINE Alu 0 117 3 9 858 187 290 14 28 chr11 35910225 35910296 -85933560 + MIRm SINE MIR 52 121 -155 9 858 403 201 220 7 chr11 35910945 35911095 -85932761 - B3A SINE B2 -16 182 1 9 858 986 277 76 17 chr11 35911560 35911861 -85931995 + MER2 DNA MER2_type 4 322 -23 9 858 293 314 134 29 chr11 35912099 35912345 -85931511 - L2 LINE L2 -373 3046 2775 9 858 255 326 62 81 chr11 35913465 35913675 -85930181 + L2c LINE L2 3182 3387 0 9 107 214 250 0 0 chr11 35913688 35913736 -85930120 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 9 859 213 121 0 0 chr11 35913758 35913791 -85930065 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 9 859 232 313 18 104 chr11 35914540 35914632 -85929224 - MIRc SINE MIR -39 229 151 9 859 3993 75 2 29 chr11 35914632 35915178 -85928678 - L1Md_F2 LINE L1 0 6582 6052 9 859 232 313 18 104 chr11 35915178 35915249 -85928607 - MIRc SINE MIR -118 150 80 9 859 1105 69 23 6 chr11 35916007 35916181 -85927675 + (TTCTC)n Simple_repeat Simple_repeat 3 179 0 9 859 1587 10 3 0 chr11 35916181 35916476 -85927380 + (TCTCC)n Simple_repeat Simple_repeat 1 296 0 9 859 490 282 25 31 chr11 35916635 35916796 -85927060 - MER105 DNA DNA 0 204 45 9 859 304 269 26 69 chr11 35916827 35916943 -85926913 + MER5A DNA MER1_type 45 155 -34 9 859 672 279 14 0 chr11 35919007 35919147 -85924709 + RSINE1 SINE B4 8 149 -16 9 859 880 257 55 48 chr11 35919252 35919563 -85924293 + L1MA10 LINE L1 6022 6334 0 9 859 360 175 16 40 chr11 35920751 35920876 -85922980 + CT-rich Low_complexity Low_complexity 1 122 0 9 859 1050 88 0 0 chr11 35920876 35921023 -85922833 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 9 859 326 294 0 0 chr11 35921677 35921769 -85922087 - L1ME1 LINE L1 -11 6168 6077 9 859 198 0 0 0 chr11 35922581 35922603 -85921253 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 9 859 555 244 43 111 chr11 35923521 35923756 -85920100 + MER20 DNA MER1_type 1 219 0 9 859 200 325 26 13 chr11 35924391 35924469 -85919387 - MER91B DNA Tip100 -111 79 1 9 859 240 156 0 0 chr11 35924670 35924693 -85919163 + A-rich Low_complexity Low_complexity 1 23 0 9 859 1249 41 0 0 chr11 35924693 35924840 -85919016 + B1_Mm SINE Alu 1 147 0 9 859 240 156 0 0 chr11 35924840 35924861 -85918995 + A-rich Low_complexity Low_complexity 24 44 0 9 859 336 272 58 0 chr11 35925328 35925431 -85918425 + MIRc SINE MIR 36 144 -124 9 859 280 277 106 32 chr11 35925464 35925587 -85918269 + L2a LINE L2 3290 3421 -5 9 859 339 96 0 0 chr11 35925964 35926016 -85917840 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 859 967 252 42 31 chr11 35926019 35926306 -85917550 - B4A SINE B4 -2 290 1 9 859 569 352 71 21 chr11 35928306 35928544 -85915312 - B4A SINE B4 -1 291 42 9 859 303 246 15 0 chr11 35928623 35928688 -85915168 - ID4_ SINE ID -16 67 2 9 859 224 253 200 12 chr11 35928803 35928883 -85914973 + L2a LINE L2 3327 3421 -5 9 859 466 336 31 28 chr11 35929727 35929938 -85913918 - MIR SINE MIR -42 220 16 9 859 593 291 50 76 chr11 35930266 35930504 -85913352 - MER2 DNA MER2_type -1 344 113 9 859 641 161 16 0 chr11 35930504 35930628 -85913228 + GA-rich Low_complexity Low_complexity 4 129 0 9 859 654 274 161 55 chr11 35931764 35931882 -85911974 + MER2 DNA MER2_type 12 150 -195 9 859 1087 50 49 21 chr11 35931882 35932024 -85911832 - B1_Mus2 SINE Alu 0 147 2 9 859 654 274 161 55 chr11 35932024 35932179 -85911677 + MER2 DNA MER2_type 151 314 -31 9 859 336 287 0 11 chr11 35932199 35932287 -85911569 + MamRep605 Unknown Unknown 462 548 -328 9 859 417 389 18 5 chr11 35932652 35932869 -85910987 - L2a LINE L2 -251 3175 2956 9 859 252 86 0 0 chr11 35932931 35932966 -85910890 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 859 243 239 48 27 chr11 35933632 35933671 -85910185 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 9 859 189 0 0 0 chr11 35933671 35933692 -85910164 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 859 1312 125 26 11 chr11 35933692 35934051 -85909805 + (TCTA)n Simple_repeat Simple_repeat 1 364 0 9 859 213 39 0 0 chr11 35937083 35937109 -85906747 + (A)n Simple_repeat Simple_repeat 1 26 0 9 859 189 213 0 0 chr11 35939173 35939220 -85904636 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 859 453 297 119 42 chr11 35939759 35940019 -85903837 + MER102a DNA MER1_type 41 320 -10 9 859 183 200 182 0 chr11 35940804 35940859 -85902997 + L2a LINE L2 3354 3418 -8 9 859 286 343 41 35 chr11 35941310 35941455 -85902401 - MIRm SINE MIR -77 191 43 9 859 615 14 0 0 chr11 35941607 35941679 -85902177 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 859 622 271 27 38 chr11 35944161 35944345 -85899511 - B3A SINE B2 -16 182 1 9 859 289 227 45 0 chr11 35944924 35944990 -85898866 - ID2 SINE ID -11 72 4 9 859 606 218 80 44 chr11 35946164 35946414 -85897442 - MER113A DNA MER1_type -1 313 55 9 859 593 311 53 37 chr11 35950702 35951023 -85892833 - MER58B DNA MER1_type -15 326 1 9 859 186 43 0 0 chr11 35951069 35951092 -85892764 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 859 339 315 11 11 chr11 35952188 35952281 -85891575 - PB1D10 SINE Alu -18 99 7 9 859 638 192 104 0 chr11 35952342 35952467 -85891389 - B1_Mus2 SINE Alu -9 138 1 9 859 593 231 60 55 chr11 35953446 35953629 -85890227 + MER5A DNA MER1_type 1 184 -5 9 859 477 0 0 0 chr11 35957185 35957238 -85886618 + (TC)n Simple_repeat Simple_repeat 1 53 0 9 859 441 331 30 8 chr11 35957263 35957394 -85886462 - B1F1 SINE Alu -15 134 1 9 859 22 88 0 0 chr11 35957646 35957703 -85886153 + AT_rich Low_complexity Low_complexity 1 57 0 9 859 561 138 0 0 chr11 35957751 35957845 -85886011 + (GGA)n Simple_repeat Simple_repeat 1 94 0 9 859 441 0 0 0 chr11 35959482 35959531 -85884325 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 859 393 316 88 7 chr11 35959899 35960036 -85883820 + RSINE1 SINE B4 2 149 -16 1 859 750 23 0 0 chr11 35960047 35960135 -85883721 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 859 228 35 0 0 chr11 35960217 35960246 -85883610 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 1 859 274 23 0 44 chr11 35960834 35960879 -85882977 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 1 859 273 89 0 0 chr11 35961208 35961253 -85882603 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 859 408 20 0 0 chr11 35961344 35961393 -85882463 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 859 257 315 104 27 chr11 35962576 35962759 -85881097 - MER117 DNA MER1_type 0 197 1 1 859 258 220 0 0 chr11 35963121 35963180 -85880676 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1 859 204 111 0 0 chr11 35963619 35963655 -85880201 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 1 859 297 0 0 0 chr11 35964039 35964072 -85879784 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 859 24 0 0 0 chr11 35964738 35964762 -85879094 + AT_rich Low_complexity Low_complexity 1 24 0 1 859 644 207 43 7 chr11 35964762 35964903 -85878953 - B1F SINE Alu -1 148 3 1 859 228 239 84 0 chr11 35965581 35965652 -85878204 + L1M LINE L1 5254 5330 -864 1 859 243 0 0 0 chr11 35965942 35965969 -85877887 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 859 22 35 0 0 chr11 35966953 35966982 -85876874 + AT_rich Low_complexity Low_complexity 1 29 0 1 859 467 223 41 129 chr11 35967622 35967637 -85876219 + ID_B1 SINE B4 70 164 -60 1 859 600 221 34 54 chr11 35967637 35967785 -85876071 + B1F SINE Alu 5 149 0 1 859 285 278 79 43 chr11 35968681 35968820 -85875036 - MIRb SINE MIR -100 168 25 1 859 415 277 83 21 chr11 35970106 35970298 -85873558 + MIR SINE MIR 51 254 -8 1 859 366 159 0 0 chr11 35970303 35970372 -85873484 + (ATGGTG)n Simple_repeat Simple_repeat 4 72 0 1 859 654 209 45 0 chr11 35971170 35971304 -85872552 + ID_B1 SINE B4 80 219 -5 1 859 902 267 118 20 chr11 35971351 35971706 -85872150 + MER88 LTR ERVL 42 431 -33 1 859 1656 22 0 0 chr11 35972790 35972975 -85870881 + B2_Mm1a SINE B2 1 185 -8 1 859 336 240 39 64 chr11 35972975 35973131 -85870725 + L1MC4a LINE L1 7457 7608 -274 1 859 832 115 136 62 chr11 35973194 35973370 -85870486 - B2_Mm2 SINE B2 -5 190 2 1 859 985 122 133 0 chr11 35973370 35973550 -85870306 - URR1A DNA MER1_type -22 204 1 1 859 25 0 0 0 chr11 35973757 35973782 -85870074 + AT_rich Low_complexity Low_complexity 1 25 0 1 859 474 259 0 90 chr11 35973785 35973963 -85869893 - RSINE1 SINE B4 -2 163 2 1 859 315 0 0 0 chr11 35974543 35974578 -85869278 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 859 848 181 0 0 chr11 35974581 35974719 -85869137 - B1_Mus1 SINE Alu -6 142 5 1 859 231 301 0 79 chr11 35976360 35976461 -85867395 - MIRm SINE MIR -124 152 60 1 859 1043 249 14 0 chr11 35977574 35977787 -85866069 - B3 SINE B2 0 216 1 1 859 692 254 18 74 chr11 35978320 35978537 -85865319 - B3 SINE B2 -10 206 2 1 859 245 296 75 88 chr11 35979285 35979444 -85864412 + LTR40b LTR ERVL 2 158 -304 1 859 425 320 124 27 chr11 35979457 35979663 -85864193 + LTR40b LTR ERVL 123 359 -103 1 859 748 313 46 25 chr11 35979663 35979948 -85863908 - B4A SINE B4 0 292 2 1 859 425 320 124 27 chr11 35979948 35980040 -85863816 + LTR40b LTR ERVL 360 450 -12 1 859 274 331 82 17 chr11 35980302 35980592 -85863264 - L2b LINE L2 -263 3112 2802 1 859 181 235 0 0 chr11 35981039 35981073 -85862783 + MIRm SINE MIR 224 257 -19 1 859 306 272 12 0 chr11 35981389 35981470 -85862386 - ID4_ SINE ID -1 82 1 1 859 988 57 7 14 chr11 35982054 35982197 -85861659 + B1_Mus1 SINE Alu 7 148 0 1 859 1151 217 9 0 chr11 35982761 35982978 -85860878 - MER58A DNA MER1_type -4 220 2 1 859 32 0 0 0 chr11 35983080 35983112 -85860744 + AT_rich Low_complexity Low_complexity 1 32 0 1 859 1499 212 30 30 chr11 35984219 35984589 -85859267 + ORR1D2 LTR MaLR 1 370 0 1 859 374 0 22 0 chr11 35986022 35986068 -85857788 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 859 191 398 21 26 chr11 35987352 35987543 -85856313 + MIR SINE MIR 28 217 -45 1 859 432 67 0 0 chr11 35989056 35989116 -85854740 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 859 226 73 24 24 chr11 35989126 35989168 -85854688 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 1 859 325 210 42 174 chr11 35990435 35990769 -85853087 + RLTR15 LTR ERVK 52 341 -18 1 859 778 148 0 8 chr11 35990790 35990919 -85852937 - B1_Mur3 SINE Alu -21 128 1 1 859 766 218 39 21 chr11 35990927 35991131 -85852725 - B3A SINE B2 0 216 9 1 859 338 280 8 101 chr11 35991154 35991219 -85852637 - PB1D10 SINE Alu 0 117 64 1 859 1854 209 36 3 chr11 35991219 35991579 -85852277 + ORR1D1 LTR MaLR 3 374 0 1 859 338 280 8 101 chr11 35991579 35991632 -85852224 - PB1D10 SINE Alu -54 63 10 1 859 3147 321 53 72 chr11 35992756 35993276 -85850580 + L1_Mur3 LINE L1 900 1446 -4401 1 859 195 42 0 0 chr11 35993276 35993300 -85850556 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 859 3147 290 62 135 chr11 35993300 35993735 -85850121 + L1_Mur3 LINE L1 1447 1888 -3959 1 859 796 208 180 0 chr11 35993735 35993913 -85849943 + B3 SINE B2 1 210 -6 1 859 3147 290 62 135 chr11 35993913 35994057 -85849799 + L1_Mur3 LINE L1 1889 1992 -3855 1 859 626 160 80 46 chr11 35994057 35994208 -85849648 + B2_Mm2 SINE B2 29 184 -11 1 859 1155 76 0 0 chr11 35994208 35994353 -85849503 - B1_Mus1 SINE Alu -2 146 2 1 859 5975 248 59 68 chr11 35994353 35996656 -85847200 + L1_Mur3 LINE L1 1984 4243 -1637 1 859 222 252 9 78 chr11 35997914 35998030 -85845826 + T-rich Low_complexity Low_complexity 3 110 0 1 859 512 317 84 25 chr11 35998594 35999157 -85844699 + L1M3c LINE L1 1921 2566 -4283 1 859 718 235 39 14 chr11 35999145 35999352 -85844504 + L1M3c LINE L1 3067 3278 -3304 1 859 705 308 14 5 chr11 35999384 35999648 -85844208 + L1M3c LINE L1 3277 3537 -3311 1 859 352 267 0 37 chr11 35999681 35999790 -85844066 - BC1_Mm scRNA scRNA -47 105 1 1 859 266 227 0 15 chr11 35999794 35999861 -85843995 + L1_Rod LINE L1 2846 2911 -2936 1 859 417 267 189 8 chr11 35999867 35999999 -85843857 + Lx8 LINE L1 6490 6645 -828 1 859 1031 325 71 46 chr11 36000002 36000806 -85843050 + Lx8 LINE L1 6649 7472 -1 1 859 2856 269 68 5 chr11 36000830 36001817 -85842039 + Lx8 LINE L1 3103 4151 -1729 2 859 811 117 108 18 chr11 36001821 36001987 -85841869 + ORR1D1 LTR MaLR 1 181 -193 3 859 518 41 0 14 chr11 36001987 36002061 -85841795 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 859 396 0 0 0 chr11 36002064 36002108 -85841748 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 5 859 833 207 63 34 chr11 36002108 36002313 -85841543 + ORR1D1 LTR MaLR 164 374 0 3 859 1487 267 35 16 chr11 36002313 36002804 -85841052 + Lx8 LINE L1 4254 4753 -1127 2 859 337 213 0 0 chr11 36002840 36002915 -85840941 - Lx9 LINE L1 -1 7643 7569 6 859 486 0 0 0 chr11 36002915 36002969 -85840887 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 859 1667 195 102 3 chr11 36002980 36003324 -85840532 - Lx9 LINE L1 -166 7478 7101 6 859 1299 293 91 53 chr11 36003372 36004301 -85839555 + Lx8 LINE L1 4825 5828 -1645 2 859 439 308 15 0 chr11 36004568 36004698 -85839158 + ID_B1 SINE B4 82 213 -11 8 859 647 259 138 4 chr11 36004716 36004941 -85838915 + L1MA4 LINE L1 3492 3746 -2397 9 859 477 259 6 24 chr11 36004931 36005097 -85838759 + L1MA4 LINE L1 5051 5213 -930 9 859 438 188 0 73 chr11 36005132 36005241 -85838615 + B2_Mm2 SINE B2 40 140 -55 1 859 37 23 0 0 chr11 36005253 36005297 -85838559 + AT_rich Low_complexity Low_complexity 1 44 0 1 859 945 188 193 0 chr11 36005308 36005489 -85838367 + B3 SINE B2 1 216 0 1 859 1166 276 68 47 chr11 36005494 36005570 -85838286 + L1MA4 LINE L1 5297 5379 -921 9 859 881 19 0 9 chr11 36005570 36005678 -85838178 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1 859 1166 280 69 45 chr11 36005678 36006228 -85837628 + L1MA4 LINE L1 5380 5910 -1563 9 859 573 15 0 0 chr11 36006229 36006295 -85837561 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 859 560 138 203 17 chr11 36006634 36006752 -85837104 + B1_Mus1 SINE Alu 8 147 -1 1 859 336 109 0 35 chr11 36006945 36007002 -85836854 + PB1D9 SINE Alu 5 59 -61 1 859 274 0 0 159 chr11 36007003 36007141 -85836715 + (CAGAG)n Simple_repeat Simple_repeat 5 120 0 1 859 624 160 0 0 chr11 36007144 36007250 -85836606 + B1_Mus2 SINE Alu 42 147 0 1 859 289 280 0 13 chr11 36007339 36007415 -85836441 + ID4 SINE ID 2 76 -7 1 859 420 20 0 0 chr11 36007415 36007464 -85836392 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 2 859 277 292 130 8 chr11 36008145 36008276 -85835580 - MIRb SINE MIR -65 203 57 2 859 268 338 66 118 chr11 36008360 36008632 -85835224 - ORR1E LTR MaLR 0 359 102 2 859 269 327 40 0 chr11 36008819 36008920 -85834936 - B4A SINE B4 -60 232 128 2 859 372 305 0 48 chr11 36008957 36009081 -85834775 - B4A SINE B4 -174 118 1 2 859 28 0 0 0 chr11 36009873 36009901 -85833955 + AT_rich Low_complexity Low_complexity 1 28 0 2 859 551 327 6 0 chr11 36010140 36010299 -85833557 - RSINE1 SINE B4 -5 160 1 2 859 888 228 1 32 chr11 36010300 36010513 -85833343 - B3A SINE B2 -3 192 8 2 859 356 270 15 45 chr11 36010707 36010839 -85833017 - MIR SINE MIR -81 181 54 2 859 23 0 0 0 chr11 36010909 36010932 -85832924 + AT_rich Low_complexity Low_complexity 1 23 0 2 859 282 295 0 0 chr11 36011224 36011302 -85832554 - MER104 DNA Tc2 -101 80 3 2 859 1385 37 0 10 chr11 36011370 36011670 -85832186 + (TG)n Simple_repeat Simple_repeat 1 296 0 3 859 261 254 181 17 chr11 36012013 36012129 -85831727 + MIR SINE MIR 113 247 -15 3 859 339 85 0 0 chr11 36012175 36012222 -85831634 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 859 539 184 0 10 chr11 36012562 36012666 -85831190 - PB1D10 SINE Alu 0 117 15 3 859 706 323 94 0 chr11 36013353 36013641 -85830215 + MER2 DNA MER2_type 31 345 0 3 859 651 132 0 0 chr11 36013950 36014064 -85829792 + (TG)n Simple_repeat Simple_repeat 1 114 0 3 859 1418 226 68 21 chr11 36014066 36014450 -85829406 + MTD LTR MaLR 18 419 0 3 859 302 295 73 136 chr11 36016418 36016638 -85827218 - MER20 DNA MER1_type -11 208 3 3 859 480 35 0 0 chr11 36016788 36016846 -85827010 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 859 321 26 0 0 chr11 36016981 36017019 -85826837 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 859 480 170 162 7 chr11 36018854 36018990 -85824866 + MER117 DNA MER1_type 4 160 -37 4 859 1222 286 107 27 chr11 36019701 36020366 -85823490 - L1MB7 LINE L1 -27 6157 5440 4 859 1786 241 20 52 chr11 36020968 36021406 -85822450 - Lx6 LINE L1 -26 7434 7011 4 859 685 218 7 34 chr11 36021869 36022016 -85821840 - B1F SINE Alu -6 143 1 4 859 423 0 0 0 chr11 36022466 36022513 -85821343 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 859 474 281 0 0 chr11 36023002 36023123 -85820733 + MIR SINE MIR 109 229 -33 4 859 334 314 0 30 chr11 36023396 36023560 -85820296 + HAL1-2a_MD LINE L1 2347 2505 -519 4 859 566 252 6 0 chr11 36023562 36023891 -85819965 + (CAA)n Simple_repeat Simple_repeat 1 331 0 4 859 200 178 125 18 chr11 36024430 36024507 -85819349 + MIR SINE MIR 54 150 -118 4 859 1023 69 13 70 chr11 36024664 36024810 -85819046 + B1_Mus1 SINE Alu 1 140 -8 4 859 342 0 0 0 chr11 36024810 36024848 -85819008 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 859 941 224 84 12 chr11 36025921 36026170 -85817686 - MTD LTR MaLR 0 419 153 5 859 232 276 49 63 chr11 36026354 36026497 -85817359 - L1MC4 LINE L1 0 8042 7902 5 859 473 297 249 25 chr11 36026506 36026785 -85817071 + MER2 DNA MER2_type 1 342 -3 5 859 414 0 0 0 chr11 36026785 36026831 -85817025 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 859 466 288 36 10 chr11 36026857 36027050 -85816806 - L1MC4 LINE L1 -160 7882 7685 5 859 317 346 42 54 chr11 36027775 36027943 -85815913 + Helitron3Na_Mam RC Helitron 153 318 -168 5 859 197 282 0 66 chr11 36028064 36028140 -85815716 - MIRm SINE MIR -4 272 202 5 859 300 326 33 0 chr11 36029340 36029432 -85814424 - MIR SINE MIR -59 149 55 5 859 279 104 0 0 chr11 36032141 36032189 -85811667 + (T)n Simple_repeat Simple_repeat 1 48 0 5 859 830 122 7 7 chr11 36032494 36032634 -85811222 + URR1B DNA MER1_type 86 225 0 5 859 276 310 53 193 chr11 36032969 36033197 -85810659 - MER20 DNA MER1_type 0 219 24 5 859 507 69 0 0 chr11 36034329 36034401 -85809455 + (CTG)n Simple_repeat Simple_repeat 2 73 0 6 859 231 286 0 0 chr11 36034576 36034625 -85809231 + polypyrimidine Low_complexity Low_complexity 3 51 0 6 859 1359 67 0 0 chr11 36034625 36034804 -85809052 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 6 859 232 239 0 0 chr11 36035605 36035651 -85808205 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 859 21 57 0 0 chr11 36036689 36036724 -85807132 + AT_rich Low_complexity Low_complexity 1 35 0 6 859 26 0 0 0 chr11 36037494 36037520 -85806336 + AT_rich Low_complexity Low_complexity 1 26 0 6 859 211 195 0 0 chr11 36037735 36037776 -85806080 + CT-rich Low_complexity Low_complexity 4 44 0 6 859 295 259 0 34 chr11 36038549 36038637 -85805219 + MLT1I LTR MaLR 325 409 -2 6 859 515 226 57 0 chr11 36040317 36040441 -85803415 - L2a LINE L2 0 3426 3296 6 859 192 371 36 30 chr11 36040786 36040920 -85802936 - MIRb SINE MIR -102 166 33 6 859 209 305 27 14 chr11 36044328 36044406 -85799450 - MIRb SINE MIR -161 107 24 7 860 24 0 0 0 chr11 36044907 36044931 -85798925 + AT_rich Low_complexity Low_complexity 1 24 0 7 860 717 205 147 4 chr11 36046484 36046743 -85797113 - Charlie5 DNA MER1_type 0 2624 2348 7 860 354 215 55 18 chr11 36046719 36046828 -85797028 - Charlie5 DNA MER1_type -2424 200 88 7 860 525 219 24 0 chr11 36047101 36047270 -85796586 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 7 860 257 330 0 0 chr11 36047270 36047358 -85796498 + (CA)n Simple_repeat Simple_repeat 1 88 0 7 860 416 218 19 19 chr11 36047362 36047521 -85796335 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 7 860 527 259 84 0 chr11 36047529 36047660 -85796196 - B1F1 SINE Alu -1 148 7 7 860 365 217 62 63 chr11 36047827 36047961 -85795895 - MIRb SINE MIR -65 203 60 7 860 732 111 0 0 chr11 36049136 36049271 -85794585 + (TCTCTG)n Simple_repeat Simple_repeat 4 138 0 7 860 337 301 99 33 chr11 36049523 36049674 -85794182 - MamRep1879 DNA hAT? -45 171 11 7 860 239 196 20 0 chr11 36049909 36049960 -85793896 + MER5A DNA MER1_type 44 95 -94 8 860 4959 34 0 0 chr11 36051204 36051767 -85792089 + MERVL-int LTR ERVL 4420 4982 -503 8 860 407 305 114 27 chr11 36051767 36051973 -85791883 + MLT1A0 LTR MaLR 133 354 -20 8 860 374 243 0 37 chr11 36052293 36052400 -85791456 + MER53 DNA hAT 90 192 -1 8 860 352 376 38 25 chr11 36052515 36052755 -85791101 + L4 LINE RTE 1156 1398 -631 8 860 234 0 0 0 chr11 36053723 36053749 -85790107 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 860 519 69 0 0 chr11 36054007 36054079 -85789777 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 860 340 280 97 14 chr11 36054151 36054296 -85789560 - MIR SINE MIR -84 178 22 8 860 716 68 10 0 chr11 36056733 36056836 -85787020 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 8 860 483 117 21 11 chr11 36058554 36058649 -85785207 + (GA)n Simple_repeat Simple_repeat 1 96 0 8 860 200 200 0 0 chr11 36058868 36058903 -85784953 + GA-rich Low_complexity Low_complexity 3 37 0 9 860 214 179 26 0 chr11 36059198 36059237 -85784619 + GA-rich Low_complexity Low_complexity 2 41 0 9 860 594 186 0 0 chr11 36061540 36061680 -85782176 + CT-rich Low_complexity Low_complexity 1 140 0 9 860 290 26 26 0 chr11 36063553 36063592 -85780264 + (TGGGGG)n Simple_repeat Simple_repeat 1 40 0 9 860 198 0 0 0 chr11 36063989 36064011 -85779845 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 9 860 189 315 0 16 chr11 36064561 36064666 -85779190 + MIRm SINE MIR 65 171 -105 9 860 546 16 0 0 chr11 36065925 36065988 -85777868 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 860 550 300 135 20 chr11 36066024 36066276 -85777580 - B4A SINE B4 -6 286 6 9 860 208 337 11 0 chr11 36066455 36066547 -85777309 + MIR SINE MIR 110 202 -60 9 860 579 293 60 111 chr11 36066667 36067020 -85776836 + MLT1B LTR MaLR 56 390 0 9 860 541 267 29 73 chr11 36067645 36067851 -85776005 - B3A SINE B2 -1 197 1 1 860 260 367 54 7 chr11 36068328 36068476 -85775380 - MER20 DNA MER1_type -17 202 48 1 860 24 0 0 0 chr11 36071046 36071070 -85772786 + AT_rich Low_complexity Low_complexity 1 24 0 1 860 531 0 0 0 chr11 36073445 36073504 -85770352 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 860 263 306 0 0 chr11 36073505 36073577 -85770279 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 1 860 414 0 0 0 chr11 36073578 36073624 -85770232 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 860 302 0 26 0 chr11 36074022 36074060 -85769796 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 860 582 268 74 31 chr11 36074998 36075256 -85768600 + L1MA5 LINE L1 5997 6265 -35 1 860 180 224 70 56 chr11 36078721 36078792 -85765064 - L2a LINE L2 0 3426 3355 1 860 516 59 0 0 chr11 36079212 36079280 -85764576 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 860 451 292 31 0 chr11 36079286 36079416 -85764440 - B3A SINE B2 -59 139 6 1 860 531 0 0 0 chr11 36081251 36081310 -85762546 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 860 1537 152 134 10 chr11 36081753 36082059 -85761797 - ORR1B2 LTR MaLR -21 346 3 1 860 784 55 18 0 chr11 36085426 36085536 -85758320 + (GA)n Simple_repeat Simple_repeat 1 112 0 1 860 612 0 0 0 chr11 36085970 36086038 -85757818 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 860 706 86 0 19 chr11 36088284 36088391 -85755465 - L1_Mus2 LINE L1 0 6566 6462 1 860 21 0 0 0 chr11 36091117 36091138 -85752718 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 234 0 0 0 chr11 36092324 36092350 -85751506 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1 860 567 0 0 0 chr11 36092905 36092968 -85750888 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 860 405 261 149 63 chr11 36093690 36093911 -85749945 - B4 SINE B4 -52 240 1 1 860 195 42 0 0 chr11 36093934 36093958 -85749898 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 860 2585 227 104 30 chr11 36094776 36095544 -85748312 + Lx7 LINE L1 6872 7696 0 1 860 1198 47 0 20 chr11 36095563 36095714 -85748142 + B1_Mus1 SINE Alu 1 148 0 1 860 686 296 58 104 chr11 36095851 36096458 -85747398 - L1MB5 LINE L1 -2 6172 5594 1 860 1167 74 9 13 chr11 36097255 36097715 -85746141 + (TTTC)n Simple_repeat Simple_repeat 1 457 0 1 860 308 238 25 12 chr11 36097716 36097797 -85746059 + CT-rich Low_complexity Low_complexity 1 82 0 1 860 527 275 42 7 chr11 36097797 36097940 -85745916 - B1_Mur1 SINE Alu -1 148 1 1 860 326 74 0 18 chr11 36098104 36098159 -85745697 + (CAAAA)n Simple_repeat Simple_repeat 5 58 0 1 860 271 181 14 14 chr11 36098221 36098294 -85745562 + GA-rich Low_complexity Low_complexity 1 73 0 1 860 378 259 16 57 chr11 36098652 36098775 -85745081 + MLT1A1 LTR MaLR 291 408 0 1 860 757 229 84 44 chr11 36098826 36099100 -85744756 - B4 SINE B4 -4 288 4 1 860 246 186 0 0 chr11 36101647 36101690 -85742166 + ID2 SINE ID 22 64 -19 1 860 881 296 28 43 chr11 36101882 36102242 -85741614 + L1MC4a LINE L1 5574 5931 -309 1 860 264 222 0 0 chr11 36104413 36104467 -85739389 + B1F SINE Alu 95 148 -1 1 860 22 0 0 0 chr11 36105989 36106011 -85737845 + AT_rich Low_complexity Low_complexity 1 22 0 1 860 269 254 123 35 chr11 36108069 36108183 -85735673 + MIRb SINE MIR 16 139 -129 1 860 270 162 40 0 chr11 36108499 36108573 -85735283 + CT-rich Low_complexity Low_complexity 2 78 0 1 860 495 0 0 0 chr11 36108590 36108645 -85735211 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 860 312 316 106 63 chr11 36108645 36108913 -85734943 - B4A SINE B4 -14 278 2 1 860 401 0 20 0 chr11 36109066 36109115 -85734741 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 860 196 208 0 20 chr11 36109121 36109170 -85734686 + L2a LINE L2 3375 3422 -4 1 860 192 77 0 0 chr11 36109809 36109835 -85734021 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 860 772 302 104 0 chr11 36109848 36110060 -85733796 - B4A SINE B4 -57 235 2 1 860 510 17 0 0 chr11 36110777 36110836 -85733020 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 860 894 270 84 42 chr11 36110898 36111161 -85732695 - B4A SINE B4 -14 278 5 1 860 234 351 0 13 chr11 36111166 36111179 -85732677 - ID4_ SINE ID 0 83 7 1 860 244 323 0 0 chr11 36111179 36111244 -85732612 - tRNA-Ala-GCA tRNA tRNA -10 65 1 1 860 324 0 0 0 chr11 36111781 36111817 -85732039 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 860 761 266 119 46 chr11 36114347 36114674 -85729182 + L1MA6 LINE L1 5947 6297 -3 1 860 543 299 97 50 chr11 36114680 36114958 -85728898 + B4 SINE B4 2 292 0 1 860 376 184 10 10 chr11 36114958 36115062 -85728794 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 860 23 0 0 0 chr11 36115284 36115307 -85728549 + AT_rich Low_complexity Low_complexity 1 23 0 1 860 405 0 0 0 chr11 36116792 36116837 -85727019 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 860 1010 121 225 0 chr11 36117598 36117780 -85726076 + URR1A DNA MER1_type 4 226 0 1 860 230 135 0 0 chr11 36118562 36118599 -85725257 + PB1D10 SINE Alu 74 110 -7 1 860 210 364 57 31 chr11 36119704 36119863 -85723993 + MIRb SINE MIR 49 211 -57 1 860 303 287 11 22 chr11 36119877 36119966 -85723890 + RSINE1 SINE B4 29 116 -49 1 860 513 0 0 0 chr11 36119972 36120029 -85723827 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 860 261 0 0 0 chr11 36120029 36120057 -85723799 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 860 25 0 0 0 chr11 36120058 36120083 -85723773 + AT_rich Low_complexity Low_complexity 1 25 0 1 860 290 376 34 42 chr11 36120491 36120727 -85723129 - MIRb SINE MIR -5 263 30 1 860 265 292 31 73 chr11 36122490 36122682 -85721174 - L1MB7 LINE L1 -85 6099 5916 1 860 274 279 12 12 chr11 36123890 36123970 -85719886 + CT-rich Low_complexity Low_complexity 3 82 0 1 860 317 319 60 30 chr11 36124979 36125244 -85718612 + L1_Mur3 LINE L1 4964 5236 -644 1 860 252 178 13 27 chr11 36125308 36125383 -85718473 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 1 860 264 273 89 52 chr11 36125383 36125611 -85718245 + L1MA5 LINE L1 5765 5985 -599 1 860 26 64 0 0 chr11 36125721 36125768 -85718088 + AT_rich Low_complexity Low_complexity 1 47 0 1 860 24 32 0 0 chr11 36125854 36125885 -85717971 + AT_rich Low_complexity Low_complexity 1 31 0 1 860 184 320 72 0 chr11 36126801 36126898 -85716958 - L2b LINE L2 -223 3152 3049 1 860 207 0 0 0 chr11 36128209 36128232 -85715624 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 860 351 0 0 0 chr11 36128598 36128637 -85715219 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 860 387 0 0 0 chr11 36128637 36128679 -85715177 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 860 349 338 24 7 chr11 36129559 36129733 -85714123 + L1MC LINE L1 5637 5821 -421 1 860 351 0 0 0 chr11 36129880 36129919 -85713937 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1 860 415 291 116 22 chr11 36129945 36130170 -85713686 + L1ME1 LINE L1 5790 6035 -144 1 860 310 250 0 27 chr11 36130258 36130332 -85713524 - BC1_Mm scRNA scRNA -65 87 16 1 860 236 292 15 0 chr11 36130274 36130339 -85713517 - ID SINE ID -150 74 9 1 860 249 303 69 50 chr11 36132967 36133127 -85710729 - MIRb SINE MIR -1 267 105 1 860 257 270 0 51 chr11 36134024 36134102 -85709754 + MER58C DNA MER1_type 142 215 0 1 860 21 36 0 0 chr11 36135161 36135189 -85708667 + AT_rich Low_complexity Low_complexity 1 28 0 1 860 277 284 112 31 chr11 36136056 36136252 -85707604 + B4A SINE B4 26 237 -55 1 860 198 318 0 0 chr11 36137299 36137343 -85706513 - L2c LINE L2 -78 3309 3266 1 860 288 0 0 0 chr11 36138447 36138479 -85705377 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 860 306 0 0 0 chr11 36139017 36139051 -85704805 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 860 270 273 126 56 chr11 36139144 36139342 -85704514 - ID_B1 SINE B4 -9 215 4 1 860 565 285 36 49 chr11 36139344 36139569 -85704287 - L1MD1 LINE L1 -19 6223 6002 1 860 21 0 0 0 chr11 36139781 36139802 -85704054 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 915 177 193 0 chr11 36139802 36139983 -85703873 - B3 SINE B2 0 216 1 1 860 289 326 14 7 chr11 36140127 36140269 -85703587 - L1M5 LINE L1 -398 5766 5624 1 860 5283 68 0 20 chr11 36141791 36142482 -85701374 + L1Md_F2 LINE L1 5906 6582 0 1 860 1221 215 162 45 chr11 36144109 36144571 -85699285 + RLTR11A2 LTR ERVK 12 527 0 1 860 351 313 11 49 chr11 36146480 36146596 -85697260 - PB1D10 SINE Alu -5 122 2 1 860 181 118 0 29 chr11 36146862 36146897 -85696959 + L3 LINE CR1 2386 2419 -2070 1 860 198 0 0 0 chr11 36147092 36147114 -85696742 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 860 222 173 115 0 chr11 36148276 36148328 -85695528 - MIR SINE MIR -64 144 87 1 860 648 295 39 87 chr11 36149241 36149553 -85694303 + MLT1C LTR MaLR 4 300 -167 1 860 445 316 98 64 chr11 36149690 36150099 -85693757 + MLT1D LTR MaLR 78 500 -5 1 860 559 290 14 18 chr11 36150284 36150505 -85693351 - MIR SINE MIR -6 256 37 1 860 527 253 134 29 chr11 36151371 36151542 -85692314 + ID_B1 SINE B4 27 215 -9 1 860 225 188 52 115 chr11 36151854 36151950 -85691906 - L2c LINE L2 -7 3380 3291 1 860 419 299 7 20 chr11 36151960 36152107 -85691749 + L1MA8 LINE L1 5742 5886 -405 2 860 565 281 103 17 chr11 36152143 36152443 -85691413 + L1MA8 LINE L1 5964 6289 -2 2 860 237 361 0 0 chr11 36152466 36152527 -85691329 + tRNA-Ala-GCA tRNA tRNA 2 62 -13 2 860 662 251 18 0 chr11 36153681 36153852 -85690004 + MER117 DNA MER1_type 6 179 -18 2 860 390 91 0 0 chr11 36154188 36154243 -85689613 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 860 531 45 0 0 chr11 36154819 36154885 -85688971 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 860 228 227 0 0 chr11 36155320 36155364 -85688492 + GA-rich Low_complexity Low_complexity 1 44 0 2 860 342 249 107 96 chr11 36155748 36155935 -85687921 + B2_Mm2 SINE B2 1 189 -6 2 860 36296 46 0 3 chr11 36155941 36161351 -85682505 + L1Md_T LINE L1 100 5589 -297 2 860 8564 36 0 0 chr11 36161351 36162347 -85681509 + L1Md_T LINE L1 5590 6585 0 2 860 333 0 0 0 chr11 36162606 36162643 -85681213 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 860 519 216 6 12 chr11 36162690 36162859 -85680997 + CT-rich Low_complexity Low_complexity 4 171 0 2 860 295 268 12 24 chr11 36162889 36162973 -85680883 - ID2 SINE ID 0 83 1 2 860 254 73 24 0 chr11 36163221 36163262 -85680594 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 860 238 24 98 0 chr11 36163797 36163838 -85680018 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 2 860 248 306 23 11 chr11 36166209 36166384 -85677472 + (CCCTA)n Simple_repeat Simple_repeat 3 179 0 2 860 238 229 0 0 chr11 36166856 36166904 -85676952 - L1MA5 LINE L1 -67 6224 6177 2 860 564 42 0 0 chr11 36168125 36168196 -85675660 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 860 431 293 25 97 chr11 36168203 36168487 -85675369 - L1MA5 LINE L1 -362 5938 5645 2 860 237 65 0 0 chr11 36168710 36168741 -85675115 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 860 245 344 21 0 chr11 36168750 36168843 -85675013 - MIR SINE MIR -148 114 20 2 860 284 349 25 32 chr11 36169275 36169425 -85674431 - L2a LINE L2 -10 3416 3225 2 860 509 0 0 16 chr11 36169467 36169529 -85674327 + (TTA)n Simple_repeat Simple_repeat 3 63 0 2 860 711 0 0 0 chr11 36171009 36171088 -85672768 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 860 226 256 0 3 chr11 36171125 36171197 -85672659 + MIR SINE MIR 88 162 -106 2 860 183 300 88 0 chr11 36172068 36172148 -85671708 + MER5B DNA MER1_type 89 175 -3 2 860 756 87 16 8 chr11 36172757 36172885 -85670971 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 2 860 513 243 170 12 chr11 36174084 36174255 -85669601 - B3A SINE B2 0 198 1 2 860 730 278 73 33 chr11 36174777 36175052 -85668804 + B4A SINE B4 3 288 -4 2 107 275 323 47 8 chr11 36175854 36175982 -85667874 + MER5A DNA MER1_type 27 159 -30 2 861 187 333 0 53 chr11 36176079 36176174 -85667682 + MIRc SINE MIR 55 144 -124 2 861 383 261 21 28 chr11 36176312 36176454 -85667402 + GA-rich Low_complexity Low_complexity 6 146 0 2 861 22 35 0 0 chr11 36176579 36176608 -85667248 + AT_rich Low_complexity Low_complexity 1 29 0 2 861 193 239 69 14 chr11 36177117 36177189 -85666667 + MIR3 SINE MIR 4 79 -129 2 861 305 211 0 53 chr11 36178647 36178722 -85665134 - MIR SINE MIR -108 154 84 2 861 876 264 77 11 chr11 36178939 36178973 -85664883 - B4A SINE B4 -2 290 252 2 861 1262 139 81 9 chr11 36178973 36179184 -85664672 + URR1A DNA MER1_type 1 226 0 2 861 876 264 77 11 chr11 36179184 36179421 -85664435 - B4A SINE B4 -41 251 2 2 861 270 0 0 0 chr11 36179669 36179699 -85664157 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 861 1126 222 0 18 chr11 36180052 36180272 -85663584 - B3 SINE B2 0 216 1 2 861 368 259 35 44 chr11 36181180 36181293 -85662563 + B1F1 SINE Alu 1 112 -37 2 861 236 212 30 0 chr11 36181295 36181361 -85662495 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 2 861 341 202 10 39 chr11 36181969 36182072 -85661784 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 2 861 231 309 2 11 chr11 36182290 36182381 -85661475 + PB1 SINE Alu 2 93 -34 2 861 243 0 0 0 chr11 36182410 36182437 -85661419 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 861 190 255 53 97 chr11 36182506 36182619 -85661237 - MIR3 SINE MIR -6 202 95 2 861 236 250 80 144 chr11 36184491 36184692 -85659164 + MLT1C LTR MaLR 45 232 -235 2 861 436 284 24 47 chr11 36185524 36185735 -85658121 - HAL1 LINE L1 -105 2402 2197 2 861 351 364 31 87 chr11 36185941 36186227 -85657629 - B4A SINE B4 -9 283 14 2 861 360 0 0 0 chr11 36186528 36186568 -85657288 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 861 242 263 113 86 chr11 36186886 36187076 -85656780 - MER90 LTR ERV1 -426 149 2 2 861 522 0 0 0 chr11 36187112 36187170 -85656686 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 861 384 301 9 0 chr11 36187170 36187283 -85656573 - RSINE1 SINE B4 -41 124 11 2 861 470 252 77 45 chr11 36187286 36187453 -85656403 + L1MB3 LINE L1 5332 5504 -679 2 861 234 0 0 0 chr11 36187453 36187479 -85656377 + (TGG)n Simple_repeat Simple_repeat 2 27 0 2 861 470 252 77 45 chr11 36187479 36187531 -85656325 + L1MB3 LINE L1 5505 5557 -626 2 861 939 77 0 0 chr11 36187531 36187661 -85656195 + B1_Mus1 SINE Alu 13 142 -6 2 861 686 274 98 30 chr11 36187794 36188129 -85655727 + L1MB3 LINE L1 5649 6006 -177 2 861 1029 220 172 4 chr11 36188385 36188641 -85655215 + Lx8 LINE L1 7081 7379 -94 2 861 636 81 0 0 chr11 36188834 36188921 -85654935 + (TATG)n Simple_repeat Simple_repeat 4 90 0 2 861 221 296 0 0 chr11 36190118 36190172 -85653684 + GA-rich Low_complexity Low_complexity 4 57 0 2 861 188 253 89 33 chr11 36190248 36190338 -85653518 - MIR3 SINE MIR -30 178 84 2 861 489 264 5 92 chr11 36190399 36190616 -85653240 + Lx9 LINE L1 5047 5244 -603 2 861 890 322 21 11 chr11 36190625 36191001 -85652855 + L1M2 LINE L1 5414 5793 -504 2 861 207 274 40 14 chr11 36191006 36191080 -85652776 + (CATATA)n Simple_repeat Simple_repeat 6 81 0 2 861 282 314 106 7 chr11 36191089 36191230 -85652626 + Lx9 LINE L1 5751 5905 -1739 2 861 3384 59 14 9 chr11 36191617 36192062 -85651794 + Lx3_Mus LINE L1 6563 7009 0 2 861 214 352 31 37 chr11 36192245 36192407 -85651449 + MIR SINE MIR 50 210 -52 2 861 407 125 14 0 chr11 36193209 36193281 -85650575 + (GGGGA)n Simple_repeat Simple_repeat 3 75 0 2 861 815 260 19 10 chr11 36193516 36193722 -85650134 - B3 SINE B2 -7 209 2 2 861 225 196 39 0 chr11 36194292 36194343 -85649513 + L4 LINE RTE 1776 1828 -201 2 861 288 91 0 0 chr11 36194478 36194522 -85649334 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 861 924 266 71 8 chr11 36194573 36194827 -85649029 + B4 SINE B4 4 273 -19 2 861 240 163 0 0 chr11 36196984 36197027 -85646829 + A-rich Low_complexity Low_complexity 1 43 0 2 861 21 0 0 0 chr11 36197453 36197474 -85646382 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 556 223 96 51 chr11 36200693 36200849 -85643007 - B3A SINE B2 -30 165 3 2 861 229 279 171 9 chr11 36201245 36201350 -85642506 - MIRc SINE MIR -116 152 31 2 861 204 220 0 39 chr11 36201390 36201442 -85642414 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 861 233 311 85 33 chr11 36202788 36202941 -85640915 + MER117 DNA MER1_type 37 197 0 2 861 553 261 83 24 chr11 36203425 36203594 -85640262 - MTE2b LTR MaLR -7 372 194 2 861 440 192 30 67 chr11 36203607 36203741 -85640115 - MTE2b LTR MaLR -249 130 2 2 861 198 325 99 47 chr11 36203771 36203982 -85639874 - MIR SINE MIR -27 241 18 2 861 251 304 0 0 chr11 36204447 36204503 -85639353 - PB1D10 SINE Alu -28 89 34 2 861 443 279 53 53 chr11 36204630 36204819 -85639037 + MER20 DNA MER1_type 27 215 -4 2 861 360 0 0 0 chr11 36205291 36205331 -85638525 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 861 654 13 0 0 chr11 36205878 36205953 -85637903 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 861 526 237 109 15 chr11 36205956 36206093 -85637763 - B3A SINE B2 -48 150 1 2 861 190 279 93 0 chr11 36206704 36206790 -85637066 - MIR SINE MIR -73 189 96 2 861 194 344 47 0 chr11 36206932 36206996 -85636860 + MIR SINE MIR 34 100 -162 2 861 947 75 8 0 chr11 36207007 36207140 -85636716 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 2 861 189 286 28 14 chr11 36207322 36207393 -85636463 + MIRc SINE MIR 188 259 -9 2 861 1644 198 60 8 chr11 36208149 36208516 -85635340 + MTD LTR MaLR 20 405 -14 2 861 186 189 0 0 chr11 36209022 36209059 -85634797 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 861 846 311 73 61 chr11 36212922 36213045 -85630811 - Lx8 LINE L1 -1023 6450 6331 2 861 294 50 0 0 chr11 36213045 36213085 -85630771 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 2 861 846 311 73 58 chr11 36213085 36213583 -85630273 - Lx8 LINE L1 -1143 6330 5818 2 861 2432 298 85 53 chr11 36213576 36214540 -85629316 + Lx8 LINE L1 6479 7473 0 2 861 491 351 45 53 chr11 36214569 36215041 -85628815 + Lx8 LINE L1 7003 7470 -3 2 861 665 277 246 10 chr11 36215303 36215697 -85628159 - L2 LINE L2 -373 3046 2560 2 861 549 44 0 0 chr11 36215855 36215923 -85627933 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 861 351 0 0 0 chr11 36215923 36215961 -85627895 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 861 682 232 45 107 chr11 36217217 36217526 -85626330 - B4A SINE B4 -1 291 2 2 861 230 0 0 32 chr11 36217838 36217869 -85625987 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 861 583 286 0 7 chr11 36218981 36219122 -85624734 + RSINE1 SINE B4 26 165 0 2 861 207 0 0 0 chr11 36219126 36219149 -85624707 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 2 861 389 308 25 84 chr11 36220393 36220595 -85623261 + MER21B LTR ERV1 566 755 -108 2 861 606 149 0 0 chr11 36221516 36221650 -85622206 + (GA)n Simple_repeat Simple_repeat 1 134 0 2 861 276 200 0 0 chr11 36225665 36225725 -85618131 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 861 21 0 0 0 chr11 36227391 36227412 -85616444 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 186 43 0 0 chr11 36228143 36228166 -85615690 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 861 183 42 0 0 chr11 36229239 36229263 -85614593 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 861 251 302 66 0 chr11 36229605 36229711 -85614145 + L1M5 LINE L1 5746 5858 -266 3 861 27 0 0 0 chr11 36230797 36230824 -85613032 + AT_rich Low_complexity Low_complexity 1 27 0 3 861 813 145 0 0 chr11 36231335 36231514 -85612342 + (GA)n Simple_repeat Simple_repeat 1 179 0 3 861 234 128 0 0 chr11 36233453 36233492 -85610364 + (CCCA)n Simple_repeat Simple_repeat 2 40 0 3 861 684 142 0 0 chr11 36234074 36234314 -85609542 + (TC)n Simple_repeat Simple_repeat 1 240 0 3 861 222 37 0 0 chr11 36234467 36234494 -85609362 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 861 589 365 11 34 chr11 36235088 36235357 -85608499 - MER2 DNA MER2_type 0 345 83 3 861 432 0 0 0 chr11 36235827 36235875 -85607981 + (TATG)n Simple_repeat Simple_repeat 2 49 0 3 861 276 321 46 0 chr11 36237629 36237738 -85606118 - MIRm SINE MIR -5 271 158 3 861 239 316 64 7 chr11 36237738 36237769 -85606087 - L2a LINE L2 -7 3419 3272 3 861 259 252 118 69 chr11 36239290 36239440 -85604416 - MIRb SINE MIR -57 211 49 3 861 911 143 0 33 chr11 36239776 36239928 -85603928 + B1_Mus2 SINE Alu 1 147 0 3 861 468 72 0 0 chr11 36239930 36239999 -85603857 + (CTAAA)n Simple_repeat Simple_repeat 1 69 0 3 861 342 0 0 0 chr11 36240199 36240237 -85603619 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 861 507 45 0 0 chr11 36240237 36240302 -85603554 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 861 800 304 14 49 chr11 36240549 36240836 -85603020 - B4 SINE B4 0 292 16 3 861 520 209 43 9 chr11 36241567 36241683 -85602173 - B1F SINE Alu -29 120 1 3 861 214 339 82 8 chr11 36241578 36241700 -85602156 - B4 SINE B4 -94 198 68 3 861 933 142 0 0 chr11 36242865 36243020 -85600836 + (CAA)n Simple_repeat Simple_repeat 2 156 0 3 861 264 120 0 0 chr11 36243278 36243328 -85600528 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 3 861 262 194 14 14 chr11 36243513 36243586 -85600270 + (TATG)n Simple_repeat Simple_repeat 4 76 0 3 861 627 57 0 0 chr11 36244240 36244328 -85599528 + (GA)n Simple_repeat Simple_repeat 2 89 0 3 861 186 43 0 0 chr11 36245740 36245763 -85598093 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 861 229 277 14 45 chr11 36248283 36248376 -85595480 + MIRm SINE MIR 42 148 -128 3 861 371 320 96 0 chr11 36248387 36248512 -85595344 - RSINE1 SINE B4 0 165 29 3 861 570 234 19 76 chr11 36249209 36249366 -85594490 - B1F1 SINE Alu -1 148 1 3 861 227 185 43 58 chr11 36249500 36249569 -85594287 - ID4 SINE ID -13 70 3 3 861 966 176 106 0 chr11 36251068 36251256 -85592600 + B3 SINE B2 1 208 -8 3 861 261 0 0 0 chr11 36253388 36253417 -85590439 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 861 248 188 16 0 chr11 36253417 36253481 -85590375 + GA-rich Low_complexity Low_complexity 2 66 0 3 861 267 79 0 0 chr11 36255110 36255148 -85588708 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 861 368 327 72 0 chr11 36256485 36256638 -85587218 + RSINE1 SINE B4 2 165 0 3 861 211 387 27 0 chr11 36257010 36257121 -85586735 - MER5B DNA MER1_type -35 143 30 3 861 558 319 58 46 chr11 36257751 36258096 -85585760 + MER77 LTR ERVL 255 603 -4 3 861 21 57 0 0 chr11 36258535 36258570 -85585286 + AT_rich Low_complexity Low_complexity 1 35 0 3 861 570 146 0 0 chr11 36260863 36260959 -85582897 + (GGAA)n Simple_repeat Simple_repeat 2 97 0 3 861 207 0 0 0 chr11 36262122 36262145 -85581711 + (ATG)n Simple_repeat Simple_repeat 1 23 0 3 861 484 309 8 8 chr11 36262147 36262274 -85581582 - B1F SINE Alu -11 138 12 3 861 451 299 97 52 chr11 36262467 36262661 -85581195 + MLT1A0 LTR MaLR 1 209 -156 3 861 499 15 14 14 chr11 36262661 36262730 -85581126 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3 861 451 299 97 52 chr11 36262730 36262884 -85580972 + MLT1A0 LTR MaLR 210 365 0 3 861 312 206 0 0 chr11 36264805 36264868 -85578988 + MER5A DNA MER1_type 82 144 -45 3 861 200 324 88 0 chr11 36266435 36266503 -85577353 + MIR SINE MIR 28 101 -161 3 861 180 0 0 0 chr11 36266514 36266534 -85577322 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 861 700 145 57 0 chr11 36266536 36266660 -85577196 - B1_Mus2 SINE Alu -6 141 11 3 861 513 0 0 0 chr11 36268387 36268444 -85575412 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 861 1130 82 7 0 chr11 36268774 36268920 -85574936 - B1_Mus1 SINE Alu -1 147 1 3 861 590 179 0 9 chr11 36269205 36269312 -85574544 - B3A SINE B2 -89 109 4 3 861 365 241 12 0 chr11 36269430 36269513 -85574343 - ID_B1 SINE B4 -55 169 86 3 861 369 198 0 0 chr11 36270704 36270785 -85573071 + CT-rich Low_complexity Low_complexity 1 81 0 3 861 259 369 56 60 chr11 36271649 36271865 -85571991 - MIR SINE MIR 0 262 48 3 861 214 281 0 17 chr11 36271898 36271956 -85571900 + GA-rich Low_complexity Low_complexity 2 58 0 3 861 258 156 0 0 chr11 36272368 36272413 -85571443 + A-rich Low_complexity Low_complexity 2 46 0 3 861 768 102 87 0 chr11 36273051 36273178 -85570678 + B1_Mus2 SINE Alu 9 146 -1 3 861 185 279 15 62 chr11 36273532 36273597 -85570259 - MIRm SINE MIR 0 276 215 3 861 732 181 68 0 chr11 36275421 36275554 -85568302 + B1_Mur4 SINE Alu 1 142 -8 3 861 1000 98 29 0 chr11 36275554 36275727 -85568129 + (GA)n Simple_repeat Simple_repeat 2 179 0 3 861 208 111 44 0 chr11 36275727 36275772 -85568084 + GA-rich Low_complexity Low_complexity 2 48 0 3 861 848 171 7 27 chr11 36278488 36278638 -85565218 - B1_Mur3 SINE Alu 0 149 3 3 861 393 141 0 0 chr11 36279088 36279152 -85564704 + URR1B DNA MER1_type 162 225 0 3 861 236 303 49 29 chr11 36280852 36280954 -85562902 - MIR SINE MIR -105 157 54 3 861 540 0 0 0 chr11 36282709 36282769 -85561087 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 861 647 224 26 23 chr11 36282834 36283033 -85560823 + B3A SINE B2 2 195 0 3 861 486 0 0 0 chr11 36284438 36284492 -85559364 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 861 211 150 25 0 chr11 36285004 36285044 -85558812 + (TATG)n Simple_repeat Simple_repeat 2 42 0 3 861 235 268 28 0 chr11 36285330 36285401 -85558455 - MER58B DNA MER1_type -110 231 159 3 861 598 261 119 11 chr11 36286214 36286474 -85557382 + Tigger13a DNA MER2_type 189 476 -295 3 861 215 297 0 10 chr11 36286683 36286785 -85557071 + (CA)n Simple_repeat Simple_repeat 2 102 0 3 861 653 226 0 6 chr11 36286796 36286974 -85556882 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 861 552 275 42 7 chr11 36287073 36287216 -85556640 - RSINE1 SINE B4 -16 149 2 3 861 23 33 0 0 chr11 36287412 36287442 -85556414 + AT_rich Low_complexity Low_complexity 1 30 0 3 861 259 286 76 11 chr11 36287644 36287736 -85556120 + L2b LINE L2 3270 3367 -8 3 861 585 0 0 0 chr11 36288753 36288818 -85555038 + (TTCCC)n Simple_repeat Simple_repeat 1 65 0 3 861 1193 96 0 6 chr11 36288818 36288996 -85554860 + (TCTCC)n Simple_repeat Simple_repeat 2 179 0 3 861 399 41 0 0 chr11 36288996 36289045 -85554811 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 861 231 254 51 0 chr11 36289099 36289158 -85554698 + T-rich Low_complexity Low_complexity 2 63 0 3 861 639 0 0 0 chr11 36290015 36290086 -85553770 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 861 455 33 0 16 chr11 36290351 36290413 -85553443 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 861 426 39 0 0 chr11 36290492 36290544 -85553312 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 861 279 0 0 0 chr11 36291169 36291200 -85552656 + (A)n Simple_repeat Simple_repeat 1 31 0 3 861 30 0 0 0 chr11 36293785 36293815 -85550041 + AT_rich Low_complexity Low_complexity 1 30 0 3 861 492 295 49 88 chr11 36294338 36294646 -85549210 + ORR1E LTR MaLR 63 358 -1 3 861 21 0 0 0 chr11 36294948 36294969 -85548887 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 434 296 64 56 chr11 36295003 36295236 -85548620 - MIRb SINE MIR 0 268 34 3 861 844 297 156 29 chr11 36296377 36296859 -85546997 - L1MB2 LINE L1 -2 6169 5627 3 861 620 209 11 11 chr11 36299157 36299200 -85544656 + polypurine Low_complexity Low_complexity 2 44 0 3 861 1271 40 17 11 chr11 36299200 36299379 -85544477 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 861 620 209 11 11 chr11 36299379 36299514 -85544342 + GA-rich Low_complexity Low_complexity 45 180 0 3 861 1904 169 0 7 chr11 36300127 36300436 -85543420 + Lx LINE L1 6095 6401 -253 3 861 597 96 19 0 chr11 36300435 36300539 -85543317 + Lx LINE L1 6546 6651 -3 3 861 499 248 28 0 chr11 36300548 36300657 -85543199 + B3A SINE B2 1 112 -86 3 861 257 51 0 25 chr11 36300701 36300741 -85543115 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 861 952 281 81 7 chr11 36300821 36301093 -85542763 - B4A SINE B4 0 292 1 3 861 279 190 0 0 chr11 36301340 36301398 -85542458 + (CAA)n Simple_repeat Simple_repeat 3 60 0 3 861 207 69 0 0 chr11 36302171 36302200 -85541656 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 861 239 0 32 0 chr11 36302708 36302739 -85541117 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 861 186 128 0 0 chr11 36302741 36302780 -85541076 + (A)n Simple_repeat Simple_repeat 1 39 0 3 861 462 101 0 0 chr11 36302891 36302960 -85540896 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 861 288 0 0 0 chr11 36304016 36304048 -85539808 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 3 861 342 309 51 14 chr11 36304887 36305025 -85538831 - LTR33 LTR ERVL -2 513 371 3 861 392 267 25 8 chr11 36305344 36305465 -85538391 + MIR3 SINE MIR 86 208 0 3 861 465 19 0 0 chr11 36305508 36305562 -85538294 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 3 861 27 29 0 0 chr11 36306579 36306613 -85537243 + AT_rich Low_complexity Low_complexity 1 34 0 4 861 290 282 0 49 chr11 36306783 36306865 -85536991 + MER44B DNA MER2_type 470 547 -3 4 107 203 128 69 11 chr11 36306910 36306997 -85536859 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 862 755 315 141 35 chr11 36307011 36307471 -85536385 + MER44B DNA MER2_type 15 523 -27 4 862 193 325 11 114 chr11 36307591 36307775 -85536081 + MIRc SINE MIR 104 268 0 4 862 450 0 0 0 chr11 36308666 36308716 -85535140 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 862 21 0 0 0 chr11 36309078 36309099 -85534757 + AT_rich Low_complexity Low_complexity 1 21 0 4 862 210 359 0 28 chr11 36309900 36310009 -85533847 + MIR SINE MIR 39 144 -118 4 862 580 346 49 23 chr11 36310132 36310481 -85533375 - L3 LINE CR1 -162 4327 3970 4 862 633 313 68 32 chr11 36310983 36311036 -85532820 + B4A SINE B4 28 86 -206 4 862 558 0 0 0 chr11 36311036 36311098 -85532758 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 862 633 313 68 32 chr11 36311098 36311295 -85532561 + B4A SINE B4 87 287 -5 4 862 272 158 140 0 chr11 36311491 36311548 -85532308 + L1MA6 LINE L1 6121 6185 -115 4 862 1089 90 0 0 chr11 36311906 36312083 -85531773 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 862 1053 92 0 0 chr11 36312104 36312277 -85531579 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 862 279 0 0 0 chr11 36314553 36314584 -85529272 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 862 492 221 0 23 chr11 36315915 36316045 -85527811 - Lx9 LINE L1 -9 7635 7509 4 862 345 103 22 44 chr11 36316353 36316444 -85527412 + A-rich Low_complexity Low_complexity 1 89 0 4 862 234 105 0 0 chr11 36317050 36317088 -85526768 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 4 862 420 135 0 0 chr11 36318908 36318982 -85524874 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 862 368 354 21 32 chr11 36319546 36319733 -85524123 + MER44D DNA MER2_type 8 192 -513 4 862 328 155 28 0 chr11 36320117 36320188 -85523668 + CT-rich Low_complexity Low_complexity 3 75 0 4 862 824 267 0 6 chr11 36320606 36320787 -85523069 - B3A SINE B2 -17 181 2 4 862 207 0 0 0 chr11 36322460 36322483 -85521373 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 862 742 288 55 40 chr11 36322701 36323027 -85520829 + MLT1B LTR MaLR 52 382 -8 4 862 200 301 55 0 chr11 36323041 36323114 -85520742 - L2a LINE L2 -9 3417 3341 4 862 624 252 6 31 chr11 36323813 36323973 -85519883 - B4 SINE B4 -2 290 135 4 862 460 339 114 35 chr11 36324094 36324203 -85519653 - Lx9 LINE L1 -13 7460 7335 4 862 377 39 20 0 chr11 36324203 36324254 -85519602 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 862 699 310 84 32 chr11 36324254 36324602 -85519254 - Lx9 LINE L1 -181 7463 6971 4 862 2005 290 22 45 chr11 36324911 36325637 -85518219 + Lx9 LINE L1 6387 7095 -549 4 862 221 299 62 12 chr11 36326367 36326499 -85517357 + MIRc SINE MIR 38 174 -94 4 862 716 304 63 52 chr11 36327166 36327437 -85516419 + B4A SINE B4 13 286 -6 4 862 2374 114 60 96 chr11 36329438 36329529 -85514327 + RLTR23 LTR ERV1 1 90 -340 4 862 399 73 0 0 chr11 36329529 36329584 -85514272 + (CAAAC)n Simple_repeat Simple_repeat 2 56 0 4 862 2374 114 60 96 chr11 36329584 36329938 -85513918 + RLTR23 LTR ERV1 91 430 0 4 862 774 94 0 0 chr11 36330349 36330466 -85513390 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 862 259 196 0 0 chr11 36331122 36331173 -85512683 - L2a LINE L2 0 3426 3376 4 862 427 294 157 14 chr11 36331173 36331390 -85512466 + Tigger15a DNA TcMar 316 563 -152 4 862 1018 236 130 35 chr11 36331860 36332198 -85511658 - ORR1D2 LTR MaLR 0 370 1 4 862 898 192 155 5 chr11 36333551 36333745 -85510111 - URR1A DNA MER1_type 0 226 4 4 862 225 0 0 0 chr11 36335941 36335966 -85507890 + (GAGAA)n Simple_repeat Simple_repeat 1 25 0 4 862 1308 79 0 0 chr11 36335966 36336143 -85507713 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 4 862 318 50 0 0 chr11 36336143 36336183 -85507673 + (GAGAA)n Simple_repeat Simple_repeat 5 44 0 4 862 246 136 0 0 chr11 36337053 36337097 -85506759 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 862 296 259 73 129 chr11 36337161 36337285 -85506571 - PB1D7 SINE Alu -1 119 3 4 862 191 250 0 0 chr11 36338117 36338161 -85505695 + L2b LINE L2 3332 3375 0 4 862 450 79 0 0 chr11 36338218 36338281 -85505575 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 862 695 213 35 12 chr11 36338281 36338452 -85505404 - B3A SINE B2 -23 175 1 4 862 1028 136 109 15 chr11 36339308 36339509 -85504347 + URR1B DNA MER1_type 6 225 0 4 862 322 244 116 87 chr11 36339509 36339547 -85504309 - CYRA11_Mm Unknown Y-chromosome -233 381 136 4 862 510 155 8 17 chr11 36340789 36340907 -85502949 + CT-rich Low_complexity Low_complexity 1 117 0 4 862 441 0 0 0 chr11 36341300 36341349 -85502507 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 862 373 289 12 73 chr11 36341498 36341662 -85502194 + MLT1D LTR MaLR 3 156 -349 4 862 913 122 65 0 chr11 36341949 36342088 -85501768 + B1_Mur4 SINE Alu 2 149 -1 4 862 207 219 0 0 chr11 36342090 36342131 -85501725 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 862 593 325 62 38 chr11 36343435 36343755 -85500101 - MER2 DNA MER2_type 0 345 18 4 862 258 385 11 75 chr11 36343897 36344071 -85499785 - MER20 DNA MER1_type -55 164 2 4 862 213 365 17 78 chr11 36345740 36345856 -85498000 - MIRm SINE MIR -58 218 110 4 862 1051 284 12 77 chr11 36347221 36347643 -85496213 + MTE2a LTR MaLR 5 379 0 4 862 344 279 29 35 chr11 36348719 36348890 -85494966 + (TATATG)n Simple_repeat Simple_repeat 1 170 0 4 862 222 37 0 0 chr11 36348996 36349023 -85494833 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 862 240 303 20 29 chr11 36351389 36351491 -85492365 + MIRc SINE MIR 48 148 -120 4 862 603 60 0 0 chr11 36351988 36352072 -85491784 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 862 297 0 0 0 chr11 36352149 36352182 -85491674 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 862 192 152 0 0 chr11 36352184 36352217 -85491639 + (CACG)n Simple_repeat Simple_repeat 3 35 0 4 862 260 245 0 7 chr11 36352538 36352682 -85491174 + CT-rich Low_complexity Low_complexity 2 144 0 4 862 255 301 21 0 chr11 36352695 36352788 -85491068 + CT-rich Low_complexity Low_complexity 2 96 0 4 862 382 352 78 37 chr11 36353886 36354181 -85489675 - MLT1J2 LTR MaLR -133 315 9 4 862 565 239 15 0 chr11 36354949 36355079 -85488777 - L1MA10 LINE L1 -1 6333 6202 4 862 1008 252 16 34 chr11 36355078 36355455 -85488401 + L1MA9 LINE L1 5072 5448 -720 4 862 388 343 82 2 chr11 36355605 36355906 -85487950 + L1MA9 LINE L1 5651 5970 -219 4 862 231 114 0 0 chr11 36356524 36356568 -85487288 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 4 862 1165 54 0 26 chr11 36357903 36358054 -85485802 - B1_Mm SINE Alu 0 147 1 4 862 1901 258 27 24 chr11 36358069 36358618 -85485238 + Lx9 LINE L1 7074 7624 -20 4 862 38 0 0 0 chr11 36358621 36358659 -85485197 + AT_rich Low_complexity Low_complexity 1 38 0 4 862 1284 89 0 0 chr11 36358907 36359087 -85484769 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 862 22 0 0 0 chr11 36360048 36360070 -85483786 + AT_rich Low_complexity Low_complexity 1 22 0 4 862 38 61 0 0 chr11 36360367 36360433 -85483423 + AT_rich Low_complexity Low_complexity 1 66 0 4 862 1124 50 0 0 chr11 36361401 36361540 -85482316 + B1_Mus1 SINE Alu 1 139 -9 4 862 320 0 25 0 chr11 36361540 36361580 -85482276 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 862 180 0 0 0 chr11 36361666 36361686 -85482170 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 4 862 1215 188 101 15 chr11 36361746 36362046 -85481810 + RMER17C LTR ERVK 16 441 -517 4 862 450 0 0 0 chr11 36362046 36362096 -85481760 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 862 1215 184 114 17 chr11 36362096 36362207 -85481649 + RMER17C LTR ERVK 281 409 -1 4 862 224 224 149 0 chr11 36362285 36362352 -85481504 - MER91B DNA Tip100 -112 78 2 4 862 490 328 82 45 chr11 36363480 36363723 -85480133 - MER44B DNA MER2_type -298 252 1 4 862 255 297 103 43 chr11 36364038 36364119 -85479737 + B4A SINE B4 1 78 -214 4 862 360 0 0 0 chr11 36364119 36364159 -85479697 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 862 486 0 0 0 chr11 36364159 36364212 -85479644 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 862 255 297 103 43 chr11 36364212 36364245 -85479611 + B4A SINE B4 79 122 -170 4 862 230 309 10 31 chr11 36364767 36364864 -85478992 + GA-rich Low_complexity Low_complexity 4 98 0 4 862 222 311 140 9 chr11 36365224 36365331 -85478525 - L2b LINE L2 -19 3356 3236 4 862 525 71 0 0 chr11 36365350 36365420 -85478436 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 862 262 313 142 40 chr11 36366100 36366326 -85477530 + MER58B DNA MER1_type 66 314 -27 4 862 185 161 0 0 chr11 36367206 36367237 -85476619 + MER5B DNA MER1_type 17 47 -131 4 862 230 207 0 5 chr11 36367286 36367340 -85476516 - L1MA4 LINE L1 -63 6240 6188 4 862 242 268 71 10 chr11 36367401 36367499 -85476357 + L1M1 LINE L1 5815 5918 -385 4 862 1892 200 200 66 chr11 36367811 36368036 -85475820 + Lx9 LINE L1 5065 5305 -542 4 862 1142 75 0 13 chr11 36368036 36368185 -85475671 + B1_Mus2 SINE Alu 1 147 0 4 862 1892 249 189 66 chr11 36368185 36369402 -85474454 + Lx9 LINE L1 5306 6712 -932 4 862 449 284 126 0 chr11 36370353 36370480 -85473376 + B1F1 SINE Alu 6 148 -1 4 862 237 321 0 0 chr11 36370492 36370548 -85473308 + ID4 SINE ID 15 70 -13 4 862 441 297 66 22 chr11 36370744 36370971 -85472885 - MIRb SINE MIR -25 243 7 4 862 327 260 23 40 chr11 36371464 36371611 -85472245 + MER5A DNA MER1_type 31 175 -3 4 862 328 234 74 52 chr11 36371653 36371788 -85472068 - L2a LINE L2 -4 3422 3285 4 862 585 210 0 0 chr11 36372522 36372660 -85471196 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 862 265 100 40 0 chr11 36372770 36372820 -85471036 + (TATG)n Simple_repeat Simple_repeat 3 54 0 4 862 531 0 0 0 chr11 36372856 36372915 -85470941 + (TTCC)n Simple_repeat Simple_repeat 1 59 0 4 862 1202 82 10 0 chr11 36372915 36373125 -85470731 + (TCTA)n Simple_repeat Simple_repeat 1 212 0 4 862 25 0 0 0 chr11 36373615 36373640 -85470216 + AT_rich Low_complexity Low_complexity 1 25 0 4 862 373 367 47 49 chr11 36373912 36374357 -85469499 + LTR16B2 LTR ERVL 8 451 -12 5 862 1002 120 32 0 chr11 36375476 36375634 -85468222 - B2_Mm2 SINE B2 -31 164 2 5 862 243 0 0 0 chr11 36375718 36375745 -85468111 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 5 862 468 0 0 0 chr11 36376420 36376472 -85467384 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 5 862 263 280 89 22 chr11 36377610 36377745 -85466111 - MIR SINE MIR -31 231 88 5 862 315 320 96 70 chr11 36378034 36378336 -85465520 + MLT1A1 LTR MaLR 84 393 -15 5 862 1004 283 154 12 chr11 36381060 36381468 -85462388 - Lx8 LINE L1 -377 7096 6631 5 862 261 224 13 38 chr11 36381470 36381549 -85462307 - L1_Rod LINE L1 -4555 1292 1216 5 862 217 0 0 57 chr11 36381707 36381742 -85462114 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 5 862 360 0 0 0 chr11 36383773 36383813 -85460043 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 862 497 309 88 104 chr11 36385341 36385716 -85458140 + Tigger7 DNA MER2_type 176 544 -6 5 862 486 328 15 7 chr11 36388350 36388485 -85455371 + RSINE1 SINE B4 4 139 -26 5 862 555 16 0 0 chr11 36388485 36388549 -85455307 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 862 722 194 0 11 chr11 36389414 36389596 -85454260 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 862 563 274 8 0 chr11 36389834 36389958 -85453898 - ID_B1 SINE B4 -9 215 91 5 862 617 288 0 0 chr11 36390775 36390914 -85452942 + ID_B1 SINE B4 84 222 -2 5 862 280 330 111 62 chr11 36392505 36392731 -85451125 - MIR SINE MIR -29 239 3 5 862 721 226 98 21 chr11 36394219 36394413 -85449443 + B3 SINE B2 4 212 -4 5 862 189 396 28 0 chr11 36394542 36394648 -85449208 + L4 LINE RTE 1720 1828 -201 5 862 216 245 38 0 chr11 36395319 36395372 -85448484 + MIRb SINE MIR 158 212 -56 5 862 203 296 0 0 chr11 36395639 36395693 -85448163 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 862 906 266 15 10 chr11 36395696 36395901 -85447955 - B3 SINE B2 -5 211 6 5 862 917 121 188 10 chr11 36396272 36396464 -85447392 - URR1A DNA MER1_type 0 226 1 5 862 264 265 0 0 chr11 36398400 36398468 -85445388 - ID4_ SINE ID -13 70 3 5 862 1293 86 0 6 chr11 36398586 36398762 -85445094 - B2_Mm2 SINE B2 -19 176 2 5 862 185 182 91 0 chr11 36401327 36401371 -85442485 - MIR SINE MIR -56 152 105 5 862 364 339 31 86 chr11 36402477 36402732 -85441124 - MIRb SINE MIR 0 268 28 5 862 494 311 47 36 chr11 36403493 36403770 -85440086 + L1MEd LINE L1 447 726 -5393 5 862 23 0 0 0 chr11 36403849 36403872 -85439984 + AT_rich Low_complexity Low_complexity 1 23 0 5 862 639 39 0 0 chr11 36404613 36404691 -85439165 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 5 862 394 49 33 0 chr11 36404720 36404781 -85439075 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 5 862 416 286 88 0 chr11 36404913 36405060 -85438796 - MER5A1 DNA MER1_type -5 161 2 5 862 513 0 0 0 chr11 36405836 36405893 -85437963 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 862 636 14 0 0 chr11 36405893 36405965 -85437891 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 862 486 322 9 0 chr11 36407241 36407356 -85436500 + B4A SINE B4 9 124 -168 5 862 567 0 0 0 chr11 36407359 36407422 -85436434 + (CAAAC)n Simple_repeat Simple_repeat 1 63 0 5 862 288 200 0 0 chr11 36407483 36407558 -85436298 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 862 21 0 0 0 chr11 36407587 36407608 -85436248 + AT_rich Low_complexity Low_complexity 1 21 0 5 862 937 361 11 3 chr11 36407889 36408175 -85435681 - B4A SINE B4 -3 289 2 5 862 957 42 0 0 chr11 36408262 36408380 -85435476 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 5 862 192 125 0 0 chr11 36408879 36408911 -85434945 + (A)n Simple_repeat Simple_repeat 1 32 0 5 862 790 326 47 52 chr11 36409584 36409946 -85433910 + MLT1A0 LTR MaLR 1 360 -5 5 862 319 335 70 19 chr11 36410108 36410321 -85433535 + MER58A DNA MER1_type 1 224 0 5 862 22 35 0 0 chr11 36410424 36410453 -85433403 + AT_rich Low_complexity Low_complexity 1 29 0 5 862 273 57 0 0 chr11 36410715 36410750 -85433106 + (TTC)n Simple_repeat Simple_repeat 2 36 0 5 862 257 268 11 44 chr11 36410772 36410862 -85432994 - MLT1A1 LTR MaLR -4 404 318 5 862 207 0 0 0 chr11 36411995 36412018 -85431838 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 862 241 324 98 9 chr11 36412095 36412207 -85431649 - MER45A DNA Tip100 -2 176 55 5 862 864 114 0 0 chr11 36412631 36412762 -85431094 + (TG)n Simple_repeat Simple_repeat 1 131 0 5 862 22 56 0 0 chr11 36413784 36413820 -85430036 + AT_rich Low_complexity Low_complexity 1 36 0 5 862 462 273 18 0 chr11 36414905 36415015 -85428841 + RSINE1 SINE B4 3 114 -51 5 862 2253 105 6 24 chr11 36415695 36416028 -85427828 + ORR1A2 LTR MaLR 1 327 0 5 862 324 254 55 58 chr11 36416099 36416237 -85427619 + B1F SINE Alu 1 149 0 5 862 214 176 0 68 chr11 36416255 36416328 -85427528 + A-rich Low_complexity Low_complexity 5 72 0 5 862 525 16 0 0 chr11 36416799 36416861 -85426995 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 862 246 266 41 129 chr11 36417241 36417388 -85426468 + MER68 LTR ERVL 5 138 -425 5 862 23 0 0 0 chr11 36419056 36419079 -85424777 + AT_rich Low_complexity Low_complexity 1 23 0 5 862 197 196 18 0 chr11 36421008 36421064 -85422792 + GA-rich Low_complexity Low_complexity 4 60 0 5 862 304 371 72 10 chr11 36422395 36422602 -85421254 + L1MB7 LINE L1 5795 6014 -170 5 862 697 194 12 0 chr11 36423588 36423748 -85420108 + GA-rich Low_complexity Low_complexity 1 162 0 5 862 340 281 71 58 chr11 36423821 36423976 -85419880 + RCHARR1 DNA MER1_type 1 157 -817 5 862 2667 223 78 46 chr11 36424015 36424282 -85419574 + RCHARR1 DNA MER1_type 236 530 -444 5 862 798 68 0 0 chr11 36424282 36424400 -85419456 + (TC)n Simple_repeat Simple_repeat 2 119 0 5 862 432 0 0 0 chr11 36424402 36424450 -85419406 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 862 2667 223 78 46 chr11 36424450 36424895 -85418961 + RCHARR1 DNA MER1_type 531 974 0 5 862 309 329 48 41 chr11 36425510 36425656 -85418200 - MER5A DNA MER1_type 0 189 43 5 862 1091 199 19 19 chr11 36425932 36426142 -85417714 - B3 SINE B2 -5 211 2 5 862 524 191 0 0 chr11 36426625 36426714 -85417142 - B3 SINE B2 -126 90 2 5 862 258 320 57 72 chr11 36428590 36428801 -85415055 - MIR SINE MIR -1 267 51 5 862 886 283 21 0 chr11 36429794 36429981 -85413875 - B3 SINE B2 -25 191 1 5 862 296 331 108 50 chr11 36430228 36430592 -85413264 - ORR1E LTR MaLR -7 367 10 5 862 190 81 26 26 chr11 36431900 36431938 -85411918 + (GGAGAA)n Simple_repeat Simple_repeat 4 41 0 5 862 571 90 36 0 chr11 36432262 36432373 -85411483 + (TCTCTG)n Simple_repeat Simple_repeat 6 120 0 5 862 207 0 0 0 chr11 36432370 36432393 -85411463 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 862 197 392 67 67 chr11 36433909 36434133 -85409723 - L2b LINE L2 -16 3359 3136 5 862 250 338 98 53 chr11 36434367 36434705 -85409151 + L2b LINE L2 2942 3294 -81 5 862 391 279 81 17 chr11 36435697 36435894 -85407962 - MIR SINE MIR -2 260 60 5 862 207 188 0 0 chr11 36436535 36436583 -85407273 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 5 107 1261 171 14 0 chr11 36437906 36438128 -85405728 - URR1B DNA MER1_type 0 225 1 5 863 292 284 67 46 chr11 36438366 36438492 -85405364 - MER5A DNA MER1_type -25 164 30 5 863 334 355 90 68 chr11 36439059 36439425 -85404431 - MLT1A LTR MaLR 0 374 1 5 863 691 292 15 15 chr11 36439425 36439620 -85404236 + MLT1F LTR MaLR 347 541 -7 5 863 512 200 0 9 chr11 36442061 36442177 -85401679 + CT-rich Low_complexity Low_complexity 1 115 0 5 863 387 304 50 89 chr11 36442233 36442435 -85401421 - B3A SINE B2 -4 194 1 5 863 444 257 124 34 chr11 36442579 36442756 -85401100 + B3 SINE B2 24 216 0 5 863 2247 118 78 19 chr11 36442784 36443154 -85400702 - Lx3C LINE L1 -8 6968 6577 5 863 829 79 44 0 chr11 36443156 36443270 -85400586 + Lx3C LINE L1 6427 6545 -431 5 863 2271 124 65 82 chr11 36444844 36445318 -85398538 + RMER4A LTR ERVK 1 466 0 5 863 241 265 155 67 chr11 36445998 36446192 -85397664 - MIR SINE MIR -47 215 5 5 863 234 268 144 0 chr11 36447042 36447139 -85396717 + MER5B DNA MER1_type 5 115 -63 5 863 277 296 59 39 chr11 36447245 36447347 -85396509 + MIRb SINE MIR 26 129 -139 5 863 325 305 159 72 chr11 36447625 36447689 -85396167 + B4A SINE B4 3 78 -214 5 863 262 297 0 159 chr11 36447689 36447777 -85396079 + PB1D10 SINE Alu 1 74 -43 5 863 1284 44 0 0 chr11 36447866 36448025 -85395831 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 5 863 344 279 22 52 chr11 36448432 36448568 -85395288 - L1MC4a LINE L1 -77 7805 7674 5 863 211 125 0 24 chr11 36450738 36450779 -85393077 + (CAA)n Simple_repeat Simple_repeat 2 41 0 5 863 522 0 0 0 chr11 36451141 36451199 -85392657 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 863 1115 274 64 15 chr11 36451214 36451540 -85392316 + ORR1E LTR MaLR 1 342 -17 5 863 335 333 0 0 chr11 36451730 36451820 -85392036 - ORR1E LTR MaLR -226 133 44 5 863 224 368 58 7 chr11 36452713 36452850 -85391006 + MIRc SINE MIR 60 203 -65 5 863 531 344 40 122 chr11 36454215 36454536 -85389320 + MLT1A0 LTR MaLR 16 310 -55 5 863 1429 177 99 68 chr11 36454900 36455043 -85388813 - ORR1D1 LTR MaLR -11 363 225 5 863 192 40 0 0 chr11 36455043 36455068 -85388788 + (GCATG)n Simple_repeat Simple_repeat 3 27 0 5 863 1429 177 99 68 chr11 36455068 36455276 -85388580 - ORR1D1 LTR MaLR -150 224 2 5 863 21 36 0 0 chr11 36455742 36455770 -85388086 + AT_rich Low_complexity Low_complexity 1 28 0 6 863 245 298 0 0 chr11 36455904 36455961 -85387895 + MER21B LTR ERV1 18 74 -789 6 863 1052 299 137 20 chr11 36455981 36456390 -85387466 + MER21B LTR ERV1 129 585 -278 6 863 462 247 132 66 chr11 36456731 36456913 -85386943 - B3A SINE B2 0 198 5 6 863 222 269 14 43 chr11 36459470 36459540 -85384316 - MIRc SINE MIR -94 174 107 6 863 536 317 13 156 chr11 36459680 36460058 -85383798 + MLT1A LTR MaLR 11 334 -40 6 863 319 226 84 42 chr11 36460265 36460431 -85383425 + RMER17A LTR ERVK 336 508 -243 6 863 199 298 59 12 chr11 36462712 36462797 -85381059 + MIR SINE MIR 73 161 -101 6 863 189 0 0 0 chr11 36462989 36463010 -85380846 + (A)n Simple_repeat Simple_repeat 1 21 0 6 863 264 77 0 0 chr11 36463217 36463256 -85380600 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 863 209 231 0 0 chr11 36464054 36464093 -85379763 + polypyrimidine Low_complexity Low_complexity 1 39 0 6 863 445 264 41 35 chr11 36464660 36464805 -85379051 - MER3 DNA MER1_type -10 199 54 6 863 239 150 17 0 chr11 36465467 36465527 -85378329 + CT-rich Low_complexity Low_complexity 2 62 0 6 863 351 233 0 0 chr11 36466551 36466654 -85377202 + CT-rich Low_complexity Low_complexity 2 104 0 6 863 423 0 0 0 chr11 36467826 36467873 -85375983 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 863 365 213 31 0 chr11 36468622 36468714 -85375142 + B1_Mus2 SINE Alu 9 135 -12 6 863 219 220 0 17 chr11 36468721 36468771 -85375085 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 863 588 40 0 0 chr11 36468771 36468846 -85375010 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 863 219 220 0 17 chr11 36468846 36468855 -85375001 + (CA)n Simple_repeat Simple_repeat 1 9 0 6 863 32 43 0 0 chr11 36472459 36472505 -85371351 + AT_rich Low_complexity Low_complexity 1 46 0 6 863 186 43 0 0 chr11 36474222 36474245 -85369611 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 863 799 216 0 0 chr11 36474245 36474379 -85369477 - B1_Mur4 SINE Alu -13 137 4 6 863 474 274 0 0 chr11 36474604 36474839 -85369017 + (CA)n Simple_repeat Simple_repeat 1 235 0 6 863 477 230 0 0 chr11 36474855 36474981 -85368875 + (CA)n Simple_repeat Simple_repeat 2 127 0 6 863 333 259 6 0 chr11 36474981 36475064 -85368792 - B1F SINE Alu -19 130 52 6 863 330 296 154 18 chr11 36474986 36475096 -85368760 - ID_B1 SINE B4 -19 205 81 6 863 22 0 0 0 chr11 36475096 36475118 -85368738 + AT_rich Low_complexity Low_complexity 1 22 0 6 863 21 36 0 0 chr11 36475412 36475440 -85368416 + AT_rich Low_complexity Low_complexity 1 28 0 6 863 456 19 0 0 chr11 36478414 36478467 -85365389 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 863 202 286 0 0 chr11 36479811 36479867 -85363989 + (ATG)n Simple_repeat Simple_repeat 3 58 0 6 863 181 353 58 43 chr11 36479938 36480077 -85363779 - L4 LINE RTE -1296 733 593 6 863 243 204 0 39 chr11 36480290 36480341 -85363515 - L2b LINE L2 -218 3157 3109 6 863 216 0 0 0 chr11 36481666 36481690 -85362166 + (T)n Simple_repeat Simple_repeat 1 24 0 6 863 226 261 0 0 chr11 36482416 36482462 -85361394 + tRNA-Ala-GCY_ tRNA tRNA 26 71 -4 6 863 1216 124 114 0 chr11 36482856 36483058 -85360798 - URR1A DNA MER1_type -1 225 1 6 863 454 318 22 76 chr11 36483131 36483315 -85360541 - B4A SINE B4 -117 175 2 6 863 216 0 0 0 chr11 36485137 36485161 -85358695 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 863 215 143 0 23 chr11 36485431 36485474 -85358382 + T-rich Low_complexity Low_complexity 3 44 0 6 863 648 38 0 0 chr11 36487353 36487432 -85356424 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 863 221 0 0 33 chr11 36488334 36488364 -85355492 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 863 183 250 0 0 chr11 36491097 36491165 -85352691 + T-rich Low_complexity Low_complexity 1 68 0 6 863 859 70 8 8 chr11 36491483 36491612 -85352244 + (GA)n Simple_repeat Simple_repeat 1 129 0 6 863 25 0 0 0 chr11 36492364 36492389 -85351467 + AT_rich Low_complexity Low_complexity 1 25 0 6 863 363 280 55 35 chr11 36495135 36495271 -85348585 + MIRb SINE MIR 5 152 -116 6 863 263 286 177 40 chr11 36495381 36495556 -85348300 - MIRb SINE MIR -60 208 10 6 863 225 0 0 0 chr11 36497210 36497235 -85346621 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 863 423 0 0 0 chr11 36497279 36497326 -85346530 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 863 432 198 150 62 chr11 36497332 36497445 -85346411 - RSINE1 SINE B4 -41 124 2 6 863 549 236 0 0 chr11 36498961 36499109 -85344747 + (TA)n Simple_repeat Simple_repeat 2 149 0 6 863 240 35 0 0 chr11 36499331 36499360 -85344496 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 863 207 0 0 0 chr11 36499751 36499774 -85344082 + (A)n Simple_repeat Simple_repeat 1 23 0 6 863 265 359 17 0 chr11 36500196 36500313 -85343543 + L2 LINE L2 2647 2765 -654 1 863 228 307 199 41 chr11 36500366 36500512 -85343344 + MLT1H2 LTR MaLR 59 227 -262 2 863 215 100 50 0 chr11 36502632 36502672 -85341184 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 863 392 361 14 82 chr11 36503463 36503671 -85340185 - MER20 DNA MER1_type -22 197 4 4 863 509 297 35 48 chr11 36503773 36504003 -85339853 - MIRb SINE MIR -1 267 41 5 863 337 297 52 39 chr11 36504241 36504395 -85339461 - MER5A1 DNA MER1_type -4 162 7 6 863 585 255 55 43 chr11 36506258 36506422 -85337434 - MER20 DNA MER1_type -53 166 1 7 863 225 241 61 37 chr11 36506561 36506643 -85337213 - LTR59 LTR ERV1 -188 409 326 8 863 331 353 8 25 chr11 36507171 36507293 -85336563 + PB1 SINE Alu 6 125 -2 9 863 441 0 0 0 chr11 36507488 36507537 -85336319 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 863 246 148 0 0 chr11 36507581 36507635 -85336221 + (CAGA)n Simple_repeat Simple_repeat 4 57 0 1 863 276 30 0 0 chr11 36507841 36507874 -85335982 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 863 282 346 23 0 chr11 36509330 36509463 -85334393 + (TATG)n Simple_repeat Simple_repeat 1 136 0 1 863 567 43 0 0 chr11 36509645 36509715 -85334141 + (GGA)n Simple_repeat Simple_repeat 1 70 0 1 863 313 310 0 14 chr11 36509795 36509867 -85333989 + MIR SINE MIR 6 76 -186 1 863 201 226 0 0 chr11 36512982 36513035 -85330821 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 863 258 197 16 32 chr11 36513153 36513216 -85330640 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 1 863 262 312 82 52 chr11 36514238 36514471 -85329385 - ORSL-2a DNA Tip100 -29 313 74 1 863 186 222 187 40 chr11 36515621 36515696 -85328160 - MIR SINE MIR -47 215 130 1 863 288 0 0 0 chr11 36515977 36516009 -85327847 + (TAA)n Simple_repeat Simple_repeat 3 34 0 2 863 536 305 113 97 chr11 36516430 36516800 -85327056 + MTEa LTR MaLR 4 379 0 2 863 259 292 177 0 chr11 36518948 36519078 -85324778 + L2a LINE L2 3274 3426 0 2 863 1109 314 37 49 chr11 36519647 36520079 -85323777 + MLT1C LTR MaLR 38 464 -3 2 863 188 383 58 8 chr11 36520314 36520435 -85323421 - MER5A DNA MER1_type -62 127 1 2 863 289 281 2 0 chr11 36520689 36520799 -85323057 + L1_Mur3 LINE L1 542 632 -7080 2 863 5279 150 35 7 chr11 36520813 36521799 -85322057 + Lx6 LINE L1 282 1295 -6433 2 863 5353 205 77 103 chr11 36521783 36522469 -85321387 + Lx6 LINE L1 4301 5002 -2458 2 863 784 154 46 64 chr11 36522469 36522642 -85321214 + B2_Mm2 SINE B2 1 170 -25 2 863 5353 205 77 103 chr11 36522642 36525032 -85318824 + Lx6 LINE L1 5003 7449 -11 2 863 451 299 61 142 chr11 36525097 36525167 -85318689 - MTE2b LTR MaLR -99 280 197 2 863 342 0 0 0 chr11 36525167 36525205 -85318651 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 863 270 0 0 0 chr11 36525205 36525234 -85318622 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 863 451 299 61 142 chr11 36525234 36525458 -85318398 - MTE2b LTR MaLR -183 196 10 2 863 442 317 80 22 chr11 36527484 36527710 -85316146 - Cheshire DNA MER1_type -2139 281 43 3 863 396 59 0 0 chr11 36528731 36528782 -85315074 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 863 863 314 84 15 chr11 36530476 36530809 -85313047 - MLT1A1 LTR MaLR -51 357 2 3 863 215 150 0 24 chr11 36531725 36531766 -85312090 + A-rich Low_complexity Low_complexity 2 41 0 3 863 236 246 16 0 chr11 36531770 36531831 -85312025 - MER53 DNA hAT -121 72 11 3 863 478 342 40 59 chr11 36532290 36532474 -85311382 + ID_B1 SINE B4 27 210 -14 3 863 207 0 0 0 chr11 36532474 36532497 -85311359 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 863 478 342 40 59 chr11 36532497 36532514 -85311342 + ID_B1 SINE B4 211 224 0 3 863 225 0 0 0 chr11 36532610 36532635 -85311221 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 863 252 0 0 0 chr11 36532635 36532662 -85311194 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 863 221 0 0 33 chr11 36533275 36533305 -85310551 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 863 432 281 50 6 chr11 36533581 36533598 -85310258 - Lx7 LINE L1 -479 7217 7201 4 863 4165 100 20 2 chr11 36533598 36534207 -85309649 - L1_Mus3 LINE L1 -6 6632 6013 4 863 432 281 50 6 chr11 36534207 36534350 -85309506 - Lx7 LINE L1 -496 7200 7051 4 863 423 287 103 5 chr11 36534471 36534695 -85309161 + L1MA9 LINE L1 6061 6306 -6 4 863 378 0 0 0 chr11 36534837 36534879 -85308977 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 863 325 269 0 0 chr11 36534883 36534950 -85308906 - ID4 SINE ID -2 81 15 4 863 1006 179 194 117 chr11 36536103 36536383 -85307473 + ORR1B2 LTR MaLR 1 324 -43 4 863 764 76 19 0 chr11 36536383 36536488 -85307368 + U6 snRNA snRNA 1 107 0 4 863 1006 179 194 117 chr11 36536488 36536548 -85307308 + ORR1B2 LTR MaLR 325 367 0 4 863 324 176 0 0 chr11 36536792 36536860 -85306996 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 863 420 319 76 50 chr11 36536938 36537215 -85306641 - B4A SINE B4 -8 284 1 4 863 319 241 52 61 chr11 36537896 36538108 -85305748 - Lx9 LINE L1 -8 7636 7427 5 863 21 82 0 0 chr11 36538141 36538190 -85305666 + AT_rich Low_complexity Low_complexity 1 49 0 5 863 1318 82 16 27 chr11 36538252 36538439 -85305417 - B2_Mm2 SINE B2 -8 187 3 5 863 210 369 49 44 chr11 36538713 36538917 -85304939 - MIRb SINE MIR -48 220 16 5 863 766 206 0 7 chr11 36539464 36539611 -85304245 - MTB_Mm LTR MaLR 0 407 262 5 863 1175 68 0 0 chr11 36539735 36539881 -85303975 + B1_Mus1 SINE Alu 2 147 -1 5 863 279 0 0 0 chr11 36540716 36540747 -85303109 + (TAA)n Simple_repeat Simple_repeat 2 32 0 5 863 351 342 81 0 chr11 36541987 36542136 -85301720 + MER5A1 DNA MER1_type 2 162 -4 5 863 184 341 99 23 chr11 36542223 36542394 -85301462 - MIR SINE MIR -15 247 64 5 863 1013 262 92 0 chr11 36543200 36543369 -85300487 + MTE2a LTR MaLR 1 175 -204 5 863 528 16 0 0 chr11 36543369 36543430 -85300426 + (CAAG)n Simple_repeat Simple_repeat 2 62 0 6 863 1013 262 92 0 chr11 36543430 36543607 -85300249 + MTE2a LTR MaLR 176 378 -1 5 863 342 0 0 0 chr11 36545641 36545679 -85298177 + (T)n Simple_repeat Simple_repeat 1 38 0 6 863 480 72 0 0 chr11 36546056 36546125 -85297731 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 863 7499 7 0 0 chr11 36546833 36547707 -85296149 - L1Md_T LINE L1 0 6582 5709 6 863 8032 15 0 0 chr11 36547703 36548662 -85295194 + L1Md_T LINE L1 4747 5705 -178 6 863 21 82 0 0 chr11 36548814 36548863 -85294993 + AT_rich Low_complexity Low_complexity 1 49 0 6 863 522 0 0 0 chr11 36549402 36549460 -85294396 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 863 422 34 0 33 chr11 36549491 36549552 -85294304 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 6 863 191 36 0 35 chr11 36549627 36549656 -85294200 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 6 863 926 249 50 0 chr11 36552924 36553105 -85290751 - B3 SINE B2 -9 207 18 6 863 23 0 0 0 chr11 36555868 36555891 -85287965 + AT_rich Low_complexity Low_complexity 1 23 0 6 863 183 42 0 0 chr11 36557781 36557805 -85286051 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 863 520 142 50 14 chr11 36557812 36558094 -85285762 + (TA)n Simple_repeat Simple_repeat 1 292 0 7 863 414 357 37 18 chr11 36558392 36558609 -85285247 + MIRb SINE MIR 34 254 -14 7 863 33 25 0 0 chr11 36561008 36561048 -85282808 + AT_rich Low_complexity Low_complexity 1 40 0 7 863 217 311 93 19 chr11 36562930 36563038 -85280818 + BC1_Mm scRNA scRNA 2 117 -35 7 863 22 0 0 0 chr11 36563549 36563571 -85280285 + AT_rich Low_complexity Low_complexity 1 22 0 7 863 26 0 0 0 chr11 36564272 36564298 -85279558 + AT_rich Low_complexity Low_complexity 1 26 0 7 863 309 354 0 0 chr11 36564360 36564456 -85279400 - PB1D10 SINE Alu -5 112 17 7 863 231 167 0 0 chr11 36565194 36565236 -85278620 + A-rich Low_complexity Low_complexity 1 42 0 7 863 504 0 0 0 chr11 36565924 36565980 -85277876 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 863 372 210 0 0 chr11 36566813 36566894 -85276962 + (TA)n Simple_repeat Simple_repeat 1 81 0 8 863 230 287 136 11 chr11 36567287 36567375 -85276481 + MTEb LTR MaLR 273 371 -8 8 863 204 102 61 0 chr11 36568051 36568100 -85275756 + (CACCC)n Simple_repeat Simple_repeat 5 56 0 8 863 249 333 0 0 chr11 36568388 36568463 -85275393 + CT-rich Low_complexity Low_complexity 3 77 0 8 864 342 0 0 0 chr11 36569331 36569369 -85274487 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8 864 338 0 24 0 chr11 36570249 36570291 -85273565 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 864 438 269 9 9 chr11 36570860 36570969 -85272887 - AmnSINE1 SINE SINE -193 382 274 8 864 210 37 0 0 chr11 36573081 36573108 -85270748 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 864 413 309 24 8 chr11 36573117 36573241 -85270615 - RSINE1 SINE B4 -33 132 7 8 864 3114 85 0 0 chr11 36573243 36573643 -85270213 + MTB LTR MaLR 1 400 0 8 864 21 0 0 0 chr11 36574111 36574132 -85269724 + AT_rich Low_complexity Low_complexity 1 21 0 9 864 375 179 15 15 chr11 36575400 36575468 -85268388 - ID4_ SINE ID -12 71 4 9 864 336 360 58 24 chr11 36575488 36575696 -85268160 - MIRb SINE MIR 0 268 54 9 864 2165 100 3 32 chr11 36575944 36576286 -85267570 + L1_Mus2 LINE L1 6235 6566 0 9 864 207 139 0 0 chr11 36576818 36576854 -85267002 + (CAA)n Simple_repeat Simple_repeat 1 36 0 9 864 2420 4 0 11 chr11 36577184 36577462 -85266394 - L1Md_T LINE L1 0 6582 6308 9 864 1575 339 71 41 chr11 36579421 36580366 -85263490 - L2 LINE L2 -476 2943 1971 9 864 221 256 33 11 chr11 36581054 36581180 -85262676 + (TA)n Simple_repeat Simple_repeat 1 128 0 9 864 190 252 99 108 chr11 36582177 36582288 -85261568 + MIRm SINE MIR 142 251 -25 9 864 193 280 8 158 chr11 36582194 36582321 -85261535 + L2c LINE L2 3280 3387 0 9 864 205 230 13 13 chr11 36582478 36582553 -85261303 + (TATG)n Simple_repeat Simple_repeat 4 78 0 1 864 217 68 0 43 chr11 36583524 36583570 -85260286 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 864 633 86 0 0 chr11 36583835 36583928 -85259928 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 864 486 0 0 0 chr11 36584163 36584217 -85259639 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 864 459 0 0 0 chr11 36584614 36584665 -85259191 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1 864 1257 73 0 0 chr11 36585165 36585439 -85258417 + (CA)n Simple_repeat Simple_repeat 1 274 0 1 864 241 290 42 0 chr11 36585595 36585678 -85258178 - MIRb SINE MIR -22 246 157 1 864 772 241 24 6 chr11 36586317 36586484 -85257372 + B3 SINE B2 47 216 0 1 864 708 319 73 23 chr11 36586827 36587170 -85256686 - Cheshire DNA MER1_type -1 2419 2060 1 864 296 316 108 62 chr11 36587195 36587435 -85256421 - Cheshire DNA MER1_type -2087 333 83 1 864 931 255 0 9 chr11 36587491 36587701 -85256155 - B3 SINE B2 -4 212 5 1 864 411 238 94 52 chr11 36587705 36587918 -85255938 + Lx8 LINE L1 7222 7443 -30 1 864 435 130 0 0 chr11 36588060 36588137 -85255719 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 864 25 0 0 0 chr11 36588253 36588278 -85255578 + AT_rich Low_complexity Low_complexity 1 25 0 1 864 775 251 76 10 chr11 36589524 36589721 -85254135 - B3 SINE B2 -6 210 1 1 864 3074 81 0 7 chr11 36590925 36591347 -85252509 + L1Md_F2 LINE L1 6164 6582 0 1 864 216 0 0 0 chr11 36591357 36591381 -85252475 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 864 2159 200 22 12 chr11 36591445 36591854 -85252002 - MTC LTR MaLR -8 413 1 1 864 949 308 81 41 chr11 36592639 36593194 -85250662 + Lx9 LINE L1 6849 7425 -219 1 864 1936 289 92 68 chr11 36593466 36594590 -85249266 + Charlie1a DNA MER1_type 31 1181 -274 1 864 369 0 0 0 chr11 36594663 36594704 -85249152 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 864 239 245 32 93 chr11 36594710 36594722 -85249134 - B1F2 SINE Alu -35 85 63 1 864 246 239 0 0 chr11 36594722 36594768 -85249088 - ID_B1 SINE B4 -67 157 112 1 864 239 245 32 93 chr11 36594768 36594791 -85249065 - B1F2 SINE Alu -35 62 12 1 864 183 42 0 0 chr11 36595904 36595928 -85247928 + (T)n Simple_repeat Simple_repeat 1 24 0 1 864 480 329 13 13 chr11 36596083 36596240 -85247616 + RSINE1 SINE B4 3 159 -6 1 864 360 0 0 0 chr11 36597528 36597568 -85246288 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1 864 27 29 0 0 chr11 36597688 36597722 -85246134 + AT_rich Low_complexity Low_complexity 1 34 0 1 864 349 260 188 27 chr11 36598330 36598516 -85245340 - B3 SINE B2 0 216 1 1 864 365 0 22 0 chr11 36598757 36598802 -85245054 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 864 432 0 0 0 chr11 36598802 36598849 -85245007 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 864 182 156 0 118 chr11 36598965 36599016 -85244840 - MIRm SINE MIR -115 161 117 1 864 21 0 0 0 chr11 36599160 36599181 -85244675 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 714 224 7 0 chr11 36600451 36600598 -85243258 + B1_Mur2 SINE Alu 1 148 -1 1 864 279 79 0 0 chr11 36601891 36601929 -85241927 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1 864 188 402 21 0 chr11 36602934 36603031 -85240825 + MIRb SINE MIR 31 129 -139 1 864 1413 51 0 0 chr11 36603197 36603375 -85240481 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 864 180 77 0 0 chr11 36603402 36603428 -85240428 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 864 806 30 0 0 chr11 36603428 36603527 -85240329 - B1_Mm SINE Alu -9 138 40 1 864 651 92 0 0 chr11 36605168 36605277 -85238579 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 864 2827 21 0 0 chr11 36606896 36607226 -85236630 - L1Md_F3 LINE L1 -502 6082 5753 1 864 3791 29 0 2 chr11 36607224 36607668 -85236188 + L1Md_F3 LINE L1 6104 6546 -38 1 864 525 324 28 40 chr11 36608066 36608391 -85235465 + L1MB3 LINE L1 5835 6155 -28 1 864 240 349 62 56 chr11 36608457 36608618 -85235238 + MIR SINE MIR 29 190 -72 1 864 330 26 0 0 chr11 36609037 36609076 -85234780 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 864 26 0 0 0 chr11 36611255 36611281 -85232575 + AT_rich Low_complexity Low_complexity 1 26 0 1 864 260 243 69 28 chr11 36612040 36612112 -85231744 + B3 SINE B2 68 142 -74 1 864 540 0 0 0 chr11 36612142 36612202 -85231654 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 864 480 18 0 0 chr11 36612753 36612810 -85231046 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 864 270 21 20 41 chr11 36614914 36614963 -85228893 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 1 864 369 0 0 0 chr11 36616734 36616775 -85227081 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 1 864 209 143 36 0 chr11 36617053 36617109 -85226747 + (TCTG)n Simple_repeat Simple_repeat 2 59 0 1 864 183 80 0 0 chr11 36617111 36617136 -85226720 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 864 693 120 0 0 chr11 36619542 36619675 -85224181 + (TC)n Simple_repeat Simple_repeat 2 134 0 1 864 612 27 0 0 chr11 36619675 36619749 -85224107 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 864 437 328 30 45 chr11 36620231 36620432 -85223424 - B3 SINE B2 -17 199 2 1 864 433 47 23 34 chr11 36620661 36620749 -85223107 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 1 864 1029 60 38 0 chr11 36620749 36620882 -85222974 - B1_Mus1 SINE Alu -10 138 1 1 864 2523 179 20 38 chr11 36623372 36623777 -85220079 - Lx9 LINE L1 -564 7080 6672 1 864 1292 107 82 0 chr11 36623777 36623983 -85219873 - L1Md_F2 LINE L1 0 6582 6360 1 864 2523 179 20 38 chr11 36623983 36624076 -85219780 - Lx9 LINE L1 -973 6671 6591 1 864 314 243 40 0 chr11 36624079 36624153 -85219703 - Lx9 LINE L1 -1204 6440 6364 1 864 414 0 0 0 chr11 36624166 36624212 -85219644 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 864 243 206 87 0 chr11 36624241 36624333 -85219523 + Lx9 LINE L1 7502 7601 -43 1 864 222 171 0 0 chr11 36625109 36625150 -85218706 + (CAT)n Simple_repeat Simple_repeat 2 42 0 1 864 1163 68 7 0 chr11 36627113 36627260 -85216596 + B1_Mus1 SINE Alu 1 148 0 1 864 303 150 0 0 chr11 36627263 36627323 -85216533 + (A)n Simple_repeat Simple_repeat 1 60 0 1 864 36 62 0 0 chr11 36627937 36628001 -85215855 + AT_rich Low_complexity Low_complexity 1 64 0 1 864 34 65 0 0 chr11 36629072 36629134 -85214722 + AT_rich Low_complexity Low_complexity 1 62 0 1 864 360 64 0 0 chr11 36629965 36630012 -85213844 + (TAAAA)n Simple_repeat Simple_repeat 1 47 0 1 864 26 64 0 0 chr11 36630205 36630252 -85213604 + AT_rich Low_complexity Low_complexity 1 47 0 1 864 44 35 0 0 chr11 36631849 36631907 -85211949 + AT_rich Low_complexity Low_complexity 1 58 0 1 864 184 30 61 0 chr11 36633190 36633223 -85210633 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 864 245 75 0 24 chr11 36633537 36633578 -85210278 + (TAA)n Simple_repeat Simple_repeat 3 42 0 1 864 752 76 246 0 chr11 36633765 36633883 -85209973 + B1_Mus2 SINE Alu 1 147 0 1 864 341 300 21 7 chr11 36633948 36634089 -85209767 + CT-rich Low_complexity Low_complexity 3 145 0 1 864 215 128 0 60 chr11 36635122 36635172 -85208684 + (CACCAT)n Simple_repeat Simple_repeat 4 50 0 1 864 211 143 24 0 chr11 36635365 36635407 -85208449 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 864 207 0 0 0 chr11 36637063 36637086 -85206770 + (A)n Simple_repeat Simple_repeat 1 23 0 1 864 419 305 0 33 chr11 36638361 36638483 -85205373 + ID_B1 SINE B4 103 220 -4 1 864 266 196 37 50 chr11 36638917 36639078 -85204778 + (TATAA)n Simple_repeat Simple_repeat 4 162 0 1 864 458 251 42 3 chr11 36639282 36639380 -85204476 - PB1D7 SINE Alu -1 126 21 1 864 332 206 0 0 chr11 36639842 36639905 -85203951 - Lx9 LINE L1 -221 7423 7361 1 864 435 19 0 0 chr11 36640050 36640102 -85203754 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 864 365 365 35 105 chr11 36640103 36640360 -85203496 - B4 SINE B4 -9 283 45 1 864 272 308 0 37 chr11 36641027 36641135 -85202721 + C-rich Low_complexity Low_complexity 1 104 0 1 864 501 299 130 29 chr11 36641262 36641538 -85202318 + Lx8 LINE L1 7168 7471 -2 1 864 423 0 0 0 chr11 36641903 36641950 -85201906 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 864 822 48 0 0 chr11 36642123 36642226 -85201630 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 864 217 234 0 0 chr11 36642500 36642547 -85201309 + MIRb SINE MIR 187 233 -35 1 864 29 0 0 0 chr11 36643269 36643298 -85200558 + AT_rich Low_complexity Low_complexity 1 29 0 1 864 261 0 0 0 chr11 36643448 36643477 -85200379 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 864 480 35 0 0 chr11 36646840 36646898 -85196958 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 864 297 0 0 0 chr11 36646898 36646930 -85196926 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 864 568 151 43 7 chr11 36647551 36647691 -85196165 + CT-rich Low_complexity Low_complexity 2 146 0 1 864 219 298 0 0 chr11 36648574 36648621 -85195235 + (CACG)n Simple_repeat Simple_repeat 1 47 0 1 864 22 35 0 0 chr11 36649295 36649324 -85194532 + AT_rich Low_complexity Low_complexity 1 29 0 1 864 33 43 0 0 chr11 36650565 36650612 -85193244 + AT_rich Low_complexity Low_complexity 1 47 0 1 864 192 77 0 0 chr11 36652151 36652177 -85191679 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 864 264 30 0 0 chr11 36652177 36652210 -85191646 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 864 463 376 35 5 chr11 36652318 36652521 -85191335 + Tigger5 DNA MER2_type 20 228 -2178 1 864 807 284 84 58 chr11 36652536 36652895 -85190961 + ORR1D2 LTR MaLR 1 368 -2 1 864 239 242 106 0 chr11 36652899 36652965 -85190891 + Charlie12 DNA MER1_type 7 79 -2794 1 864 236 363 48 10 chr11 36653027 36653130 -85190726 + Tigger5 DNA MER2_type 2300 2406 0 1 864 247 263 0 34 chr11 36653285 36653344 -85190512 + Charlie8 DNA MER1_type 2372 2428 0 1 864 25 0 0 0 chr11 36653584 36653609 -85190247 + AT_rich Low_complexity Low_complexity 1 25 0 1 864 186 71 0 0 chr11 36654162 36654190 -85189666 + (CATA)n Simple_repeat Simple_repeat 4 31 0 2 864 279 0 0 0 chr11 36654192 36654223 -85189633 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2 864 210 308 52 59 chr11 36655128 36655319 -85188537 - MIRb SINE MIR -56 206 24 2 864 733 306 32 64 chr11 36655366 36655771 -85188085 + L1MB8 LINE L1 5723 6114 -64 2 864 591 135 0 0 chr11 36655771 36655867 -85187989 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 864 543 16 0 0 chr11 36657373 36657437 -85186419 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 864 696 248 0 0 chr11 36658177 36658318 -85185538 - B1_Mur1 SINE Alu -8 141 1 2 864 451 281 46 46 chr11 36658431 36658606 -85185250 - MIRb SINE MIR -59 209 35 2 864 23 0 0 0 chr11 36658620 36658643 -85185213 + AT_rich Low_complexity Low_complexity 1 23 0 2 864 374 328 45 50 chr11 36659064 36659263 -85184593 + B3A SINE B2 1 198 0 2 864 486 275 8 8 chr11 36660956 36661077 -85182779 + L2c LINE L2 3257 3377 -10 2 864 278 291 121 46 chr11 36661662 36661835 -85182021 - MIRb SINE MIR -22 246 61 2 864 437 309 14 54 chr11 36661861 36662008 -85181848 + ID_B1 SINE B4 83 223 -1 2 864 236 274 140 9 chr11 36664179 36664293 -85179563 + L2 LINE L2 1396 1524 -1895 2 864 360 0 0 0 chr11 36664385 36664425 -85179431 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 864 667 240 13 7 chr11 36664425 36664580 -85179276 - MLT2B1 LTR ERVL -362 158 3 2 864 605 80 11 0 chr11 36666306 36666394 -85177462 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 864 203 365 0 12 chr11 36666399 36666485 -85177371 + CT-rich Low_complexity Low_complexity 3 87 0 2 864 2777 206 101 50 chr11 36666525 36667468 -85176388 + Lx5 LINE L1 6006 7033 -17 2 864 1839 34 0 0 chr11 36667504 36667738 -85176118 - L1_Mm LINE L1 -3285 2598 2365 2 864 708 12 0 0 chr11 36668165 36668246 -85175610 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 864 223 171 73 0 chr11 36668419 36668460 -85175396 - ID4 SINE ID -38 45 2 2 864 352 352 104 7 chr11 36668828 36669097 -85174759 + L1M5 LINE L1 3035 3329 -2817 2 864 24 53 0 0 chr11 36670087 36670125 -85173731 + AT_rich Low_complexity Low_complexity 1 38 0 2 864 324 70 0 0 chr11 36670271 36670314 -85173542 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 864 576 0 0 0 chr11 36672679 36672743 -85171113 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 2 864 351 0 0 0 chr11 36673277 36673316 -85170540 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 864 360 229 0 27 chr11 36673503 36673687 -85170169 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 864 408 295 28 73 chr11 36673714 36673893 -85169963 - Lx8 LINE L1 -159 7314 7144 2 864 24 0 0 0 chr11 36676523 36676547 -85167309 + AT_rich Low_complexity Low_complexity 1 24 0 2 864 936 94 84 45 chr11 36679127 36679305 -85164551 - B2_Mm2 SINE B2 -8 187 3 2 864 924 153 34 78 chr11 36680417 36680686 -85163170 + Lx9 LINE L1 7352 7608 -36 2 864 6841 31 0 4 chr11 36680697 36681563 -85162293 + L1Md_T LINE L1 5779 6582 0 2 864 384 22 0 0 chr11 36682581 36682626 -85161230 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 864 257 343 11 22 chr11 36684147 36684329 -85159527 + L1MDa LINE L1 110 289 -6344 2 864 383 187 22 0 chr11 36684569 36684660 -85159196 + (TATG)n Simple_repeat Simple_repeat 4 96 0 2 864 234 0 0 0 chr11 36685285 36685311 -85158545 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 2 864 215 282 99 0 chr11 36685312 36685383 -85158473 - PB1D7 SINE Alu -13 107 30 2 864 402 233 91 4 chr11 36687578 36687692 -85156164 - PB1D9 SINE Alu -27 122 2 2 864 182 62 0 30 chr11 36688058 36688091 -85155765 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 2 864 467 310 103 27 chr11 36688599 36688861 -85154995 - L1MEf LINE L1 -4025 2200 1919 2 864 311 315 127 45 chr11 36688951 36689243 -85154613 - L1MEf LINE L1 -4928 1191 876 2 864 1132 54 0 33 chr11 36689624 36689776 -85154080 - B1_Mus1 SINE Alu 0 148 2 2 864 787 287 3 50 chr11 36689828 36690055 -85153801 - B3A SINE B2 0 216 1 2 864 246 32 0 0 chr11 36690204 36690235 -85153621 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 864 1478 194 30 18 chr11 36690295 36690631 -85153225 - RMER1C Other Other -4 1338 999 2 864 368 52 35 0 chr11 36691906 36691964 -85151892 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 2 864 752 294 16 5 chr11 36692065 36692250 -85151606 - B4 SINE B4 -22 270 84 2 864 210 37 0 0 chr11 36692635 36692662 -85151194 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 864 294 227 0 12 chr11 36692663 36692913 -85150943 + A-rich Low_complexity Low_complexity 1 247 0 2 864 560 270 50 25 chr11 36692913 36693066 -85150790 + ID_B1 SINE B4 68 219 -73 2 864 194 380 12 12 chr11 36693460 36693540 -85150316 - L2b LINE L2 0 3375 3296 2 864 852 155 0 0 chr11 36694522 36694683 -85149173 + (TG)n Simple_repeat Simple_repeat 2 162 0 2 864 443 237 96 58 chr11 36694700 36694888 -85148968 - L2 LINE L2 -965 2454 2260 2 864 442 287 77 85 chr11 36695081 36695329 -85148527 + B4A SINE B4 3 292 0 2 864 760 197 204 23 chr11 36695583 36695885 -85147971 + MTD LTR MaLR 2 411 -8 2 864 472 248 0 60 chr11 36695937 36696053 -85147803 + B4A SINE B4 1 109 -183 2 864 513 309 71 0 chr11 36696614 36696740 -85147116 + RSINE1 SINE B4 15 149 -16 2 864 892 74 0 16 chr11 36697210 36697333 -85146523 + B1_Mm SINE Alu 25 145 -2 2 864 39 38 0 0 chr11 36697333 36697386 -85146470 + AT_rich Low_complexity Low_complexity 1 53 0 2 864 224 288 0 29 chr11 36697457 36697525 -85146331 - BC1_Mm scRNA scRNA -70 82 17 2 864 271 340 19 10 chr11 36698986 36699090 -85144766 - L2c LINE L2 -48 3339 3235 2 864 182 253 78 26 chr11 36699335 36699412 -85144444 - MIR SINE MIR -27 235 155 2 13 280 287 10 21 chr11 36700112 36700208 -85143648 + CT-rich Low_complexity Low_complexity 5 99 0 2 865 312 385 97 14 chr11 36701881 36702160 -85141696 - MER102a DNA MER1_type -26 304 3 2 865 270 337 11 11 chr11 36702375 36702462 -85141394 - PB1D10 SINE Alu 0 117 31 2 865 426 281 0 19 chr11 36702539 36702644 -85141212 + PB1D10 SINE Alu 2 104 -13 2 865 243 0 0 0 chr11 36702644 36702671 -85141185 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 2 865 342 314 56 28 chr11 36702671 36702709 -85141147 + B1F SINE Alu 113 149 0 2 865 300 259 22 15 chr11 36703517 36703654 -85140202 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 865 548 328 78 1 chr11 36703725 36703897 -85139959 + MIRb SINE MIR 3 185 -91 2 865 302 330 63 21 chr11 36703971 36704160 -85139696 + L1ME2 LINE L1 5964 6160 -4 2 865 420 55 0 0 chr11 36704275 36704330 -85139526 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 865 229 250 35 35 chr11 36704641 36704699 -85139157 + RLTRETN_Mm LTR ERVK 13 70 -252 2 865 221 268 35 18 chr11 36705534 36705591 -85138265 + L2b LINE L2 3288 3345 -30 2 865 618 337 63 50 chr11 36705690 36706133 -85137723 + LTR40a LTR ERVL 8 456 -63 2 865 270 0 0 0 chr11 36706277 36706307 -85137549 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 865 1128 210 137 22 chr11 36708159 36708480 -85135376 - MTD LTR MaLR -16 403 46 2 865 579 290 32 35 chr11 36709024 36709238 -85134618 + B3A SINE B2 11 216 0 2 865 782 282 42 5 chr11 36709395 36709584 -85134272 + B3 SINE B2 15 210 -6 2 865 251 259 22 159 chr11 36709701 36709716 -85134140 - MT2B2 LTR ERVL -317 267 218 2 865 408 324 19 0 chr11 36709716 36709821 -85134035 - PB1 SINE Alu -20 107 1 2 865 251 259 22 159 chr11 36709821 36709839 -85134017 - MT2B2 LTR ERVL -317 217 149 2 865 708 311 91 59 chr11 36710199 36711129 -85132727 + L1MC3 LINE L1 6764 7723 -62 2 865 218 36 11 117 chr11 36711378 36711472 -85132384 + T-rich Low_complexity Low_complexity 1 84 0 2 865 1071 91 14 0 chr11 36711473 36711616 -85132240 - B1_Mus1 SINE Alu -2 146 2 2 865 819 164 72 55 chr11 36712742 36712923 -85130933 - B2_Mm2 SINE B2 -9 186 3 2 865 446 304 118 6 chr11 36713118 36713287 -85130569 + MLT-int LTR MaLR 305 492 -1243 2 865 476 248 87 7 chr11 36713270 36713408 -85130448 - MLT1A1 LTR MaLR -16 392 244 2 865 575 296 198 17 chr11 36713794 36714138 -85129718 + MLT-int LTR MaLR 1313 1718 -17 2 865 549 319 92 30 chr11 36714202 36714464 -85129392 + MLT1A LTR MaLR 97 374 0 2 865 23 0 0 0 chr11 36714540 36714563 -85129293 + AT_rich Low_complexity Low_complexity 1 23 0 2 865 261 247 0 0 chr11 36714572 36714653 -85129203 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 865 218 200 44 0 chr11 36715446 36715491 -85128365 - PB1D7 SINE Alu 0 120 74 2 865 212 279 25 25 chr11 36717275 36717356 -85126500 + GA-rich Low_complexity Low_complexity 4 84 0 2 865 390 326 52 64 chr11 36717552 36717801 -85126055 + MIR SINE MIR 15 260 -2 2 865 297 0 0 0 chr11 36717822 36717855 -85126001 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 865 228 318 94 56 chr11 36718470 36718630 -85125226 - MIR SINE MIR -27 235 70 2 865 200 163 0 39 chr11 36722105 36722156 -85121700 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2 865 316 342 85 63 chr11 36722277 36722559 -85121297 + MLT1A1 LTR MaLR 77 396 -12 2 865 687 84 0 0 chr11 36722946 36723041 -85120815 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 865 501 324 7 7 chr11 36723041 36723178 -85120678 - RSINE1 SINE B4 -25 140 4 2 865 266 292 158 14 chr11 36723382 36723521 -85120335 + L2a LINE L2 3265 3423 -3 2 865 211 355 109 55 chr11 36723968 36724388 -85119468 + L2a LINE L2 2982 3424 -2 3 865 444 15 29 29 chr11 36725153 36725223 -85118633 + (CAAAAA)n Simple_repeat Simple_repeat 3 72 0 3 865 991 112 186 26 chr11 36726523 36726716 -85117140 + URR1A DNA MER1_type 1 224 -2 3 865 202 51 0 133 chr11 36727317 36727362 -85116494 + A-rich Low_complexity Low_complexity 3 41 0 3 865 23 0 0 0 chr11 36728896 36728919 -85114937 + AT_rich Low_complexity Low_complexity 1 23 0 3 865 359 261 58 41 chr11 36730295 36730480 -85113376 + ORR1E LTR MaLR 11 195 -189 3 865 371 324 108 20 chr11 36733982 36734130 -85109726 - L2a LINE L2 0 3426 3266 3 865 423 71 0 0 chr11 36734789 36734845 -85109011 + L1_Mus3 LINE L1 6417 6472 -166 3 865 180 0 0 0 chr11 36735080 36735100 -85108756 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 865 377 350 27 18 chr11 36735255 36735479 -85108377 + L1M5 LINE L1 5430 5655 -469 3 865 27 92 0 0 chr11 36735791 36735867 -85107989 + AT_rich Low_complexity Low_complexity 1 76 0 3 865 752 312 86 54 chr11 36736976 36737254 -85106602 + B4A SINE B4 2 288 -4 3 865 495 33 0 0 chr11 36737310 36737371 -85106485 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 865 459 0 0 0 chr11 36737952 36738003 -85105853 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 865 290 407 28 0 chr11 36738088 36738196 -85105660 - PB1D10 SINE Alu -5 112 2 3 865 25 0 0 0 chr11 36738310 36738335 -85105521 + AT_rich Low_complexity Low_complexity 1 25 0 3 865 414 0 0 0 chr11 36738380 36738426 -85105430 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 865 342 194 0 0 chr11 36740077 36740149 -85103707 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 865 279 0 0 0 chr11 36741491 36741522 -85102334 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 865 590 288 34 68 chr11 36741548 36741753 -85102103 - B3A SINE B2 0 198 1 3 865 1045 240 0 14 chr11 36742181 36742392 -85101464 + B3 SINE B2 8 215 -1 3 865 789 28 0 27 chr11 36742847 36742958 -85100898 + (GGGAGA)n Simple_repeat Simple_repeat 3 110 0 3 865 333 118 0 0 chr11 36744143 36744194 -85099662 + (TCC)n Simple_repeat Simple_repeat 2 52 0 3 865 833 241 26 26 chr11 36744206 36744398 -85099458 - B3A SINE B2 -1 197 6 3 865 397 319 81 61 chr11 36744552 36744799 -85099057 - L1MB5 LINE L1 -164 6010 5759 3 865 718 348 54 69 chr11 36745073 36745521 -85098335 + MT2A LTR ERVL 2 442 -91 3 865 383 330 54 24 chr11 36746627 36746832 -85097024 - LTR16E2 LTR ERVL 0 568 358 3 865 722 298 93 42 chr11 36747980 36748239 -85095617 + B4 SINE B4 1 272 -20 3 865 188 149 21 0 chr11 36748239 36748286 -85095570 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 3 865 236 159 54 161 chr11 36749201 36749425 -85094431 - RMER17D LTR ERVK -448 441 242 3 865 897 10 0 0 chr11 36750600 36750702 -85093154 + (GAGAA)n Simple_repeat Simple_repeat 3 104 0 3 865 331 244 0 32 chr11 36750718 36750811 -85093045 + CT-rich Low_complexity Low_complexity 1 90 0 3 865 229 354 101 30 chr11 36751133 36751302 -85092554 + L2 LINE L2 2243 2423 -996 3 865 309 51 0 0 chr11 36751591 36751630 -85092226 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 865 468 355 32 9 chr11 36751839 36752058 -85091798 - LTR86A1 LTR ERVL -279 234 11 3 865 207 0 0 0 chr11 36752621 36752644 -85091212 + (CAT)n Simple_repeat Simple_repeat 2 24 0 3 865 296 336 71 78 chr11 36753876 36754106 -85089750 + MIRb SINE MIR 23 258 -10 3 865 24 32 0 0 chr11 36756191 36756222 -85087634 + AT_rich Low_complexity Low_complexity 1 31 0 3 865 261 0 0 0 chr11 36756793 36756822 -85087034 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 865 441 0 0 0 chr11 36756822 36756870 -85086986 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 865 243 65 12 94 chr11 36757008 36757093 -85086763 + (CAAA)n Simple_repeat Simple_repeat 3 80 0 3 865 192 200 0 0 chr11 36757761 36757801 -85086055 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 865 223 172 51 17 chr11 36758164 36758223 -85085633 + GA-rich Low_complexity Low_complexity 4 64 0 3 865 308 24 24 0 chr11 36758364 36758405 -85085451 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 865 430 329 13 20 chr11 36758522 36758671 -85085185 - B4A SINE B4 -144 148 1 3 865 355 367 54 22 chr11 36759748 36759971 -85083885 + MIR SINE MIR 18 247 -15 3 865 567 0 0 0 chr11 36760139 36760202 -85083654 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 865 226 333 68 53 chr11 36760486 36760619 -85083237 - Tigger15a DNA TcMar -569 146 12 3 865 1856 190 67 8 chr11 36761238 36761610 -85082246 + ORR1B1 LTR MaLR 1 394 0 3 865 489 280 40 74 chr11 36761966 36762317 -85081539 + L1MD1 LINE L1 971 1309 -5324 3 865 300 27 0 0 chr11 36762333 36762370 -85081486 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 865 357 260 30 56 chr11 36762375 36762607 -85081249 + L1MD1 LINE L1 2353 2578 -4055 3 865 7258 70 7 8 chr11 36762641 36763816 -85080040 + L1_Mus1 LINE L1 5388 6567 0 3 865 1147 56 21 0 chr11 36763824 36763968 -85079888 + B1_Mm SINE Alu 1 147 0 3 865 525 310 130 49 chr11 36763993 36765365 -85078491 + L1MD1 LINE L1 2591 4073 -2464 3 865 573 15 0 0 chr11 36765365 36765431 -85078425 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 3 865 728 318 101 49 chr11 36765460 36766363 -85077493 + L1MD1 LINE L1 4136 5087 -1450 3 865 189 0 0 0 chr11 36766363 36766384 -85077472 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 3 865 728 318 101 49 chr11 36766384 36766571 -85077285 + L1MD1 LINE L1 5088 5283 -1254 3 865 589 333 0 13 chr11 36766881 36767039 -85076817 + B3A SINE B2 8 163 -35 3 865 561 15 0 0 chr11 36767041 36767107 -85076749 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 865 759 212 19 104 chr11 36767108 36767319 -85076537 + B3A SINE B2 6 198 0 3 865 304 289 0 0 chr11 36767346 36767422 -85076434 + L1M4 LINE L1 5197 5272 -874 3 865 1117 269 25 32 chr11 36767491 36767933 -85075923 + L1MD1 LINE L1 5797 6235 -398 3 865 4344 117 7 10 chr11 36768118 36768819 -85075037 - L1_Mus3 LINE L1 -254 5629 4931 3 865 6830 82 8 9 chr11 36768814 36769804 -85074052 + L1_Mus3 LINE L1 5642 6630 -8 3 865 230 89 33 67 chr11 36769921 36769981 -85073875 + A-rich Low_complexity Low_complexity 2 59 0 3 865 28 48 0 0 chr11 36770051 36770093 -85073763 + AT_rich Low_complexity Low_complexity 1 42 0 3 865 7033 60 6 7 chr11 36770095 36771039 -85072817 + L1_Mus1 LINE L1 5625 6567 0 3 865 216 0 0 0 chr11 36772184 36772208 -85071648 + (A)n Simple_repeat Simple_repeat 1 24 0 3 865 606 34 34 0 chr11 36772355 36772444 -85071412 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 865 480 99 0 0 chr11 36773577 36773648 -85070208 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 865 360 250 39 20 chr11 36775926 36776028 -85067828 - MER58A DNA MER1_type -70 154 51 3 865 429 308 146 40 chr11 36776059 36776306 -85067550 + Lx8 LINE L1 6826 7098 -375 3 865 430 327 5 54 chr11 36778445 36778630 -85065226 + B3A SINE B2 46 216 0 3 865 242 316 20 30 chr11 36781304 36781405 -85062451 + MLT1A1 LTR MaLR 88 187 -221 3 865 219 290 6 12 chr11 36781560 36781724 -85062132 + (CATA)n Simple_repeat Simple_repeat 3 165 0 3 865 318 152 0 0 chr11 36781725 36781771 -85062085 + HAL1-3A_ME LINE L1 1977 2022 -836 3 865 230 238 188 0 chr11 36781895 36781975 -85061881 - MIRm SINE MIR -127 149 55 3 865 210 333 27 0 chr11 36782783 36782858 -85060998 - MER5A DNA MER1_type -109 80 4 3 865 414 0 0 0 chr11 36784279 36784325 -85059531 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 865 22 35 0 0 chr11 36786128 36786157 -85057699 + AT_rich Low_complexity Low_complexity 1 29 0 3 865 208 154 0 37 chr11 36786550 36786604 -85057252 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 865 190 354 4 0 chr11 36787442 36787516 -85056340 + MIRm SINE MIR 94 168 -94 3 865 27 62 0 0 chr11 36787528 36787576 -85056280 + AT_rich Low_complexity Low_complexity 1 48 0 3 865 207 100 0 0 chr11 36788032 36788062 -85055794 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 3 865 1065 110 0 0 chr11 36788889 36789052 -85054804 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 3 865 195 42 0 0 chr11 36789108 36789132 -85054724 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 865 181 343 91 59 chr11 36789152 36789338 -85054518 + L2a LINE L2 2857 3048 -371 3 865 1303 348 116 32 chr11 36791514 36792409 -85051447 + MLT-int LTR MaLR 9 978 -757 3 865 763 371 48 48 chr11 36792477 36792571 -85051285 + MLT-int LTR MaLR 1097 1192 -543 3 865 941 221 251 0 chr11 36792571 36792870 -85050986 - ORR1C1 LTR MaLR -3 375 2 3 865 763 371 48 48 chr11 36792870 36793174 -85050682 + MLT-int LTR MaLR 1193 1495 -240 3 865 3834 41 6 6 chr11 36793181 36793651 -85050205 - L1Md_F2 LINE L1 -14 6568 6099 3 865 470 317 13 72 chr11 36793739 36793892 -85049964 - B1F1 SINE Alu -1 148 5 3 865 359 310 41 61 chr11 36793986 36794322 -85049534 + MLT1A1 LTR MaLR 1 357 -33 3 865 264 328 61 88 chr11 36794352 36794499 -85049357 + MLT1J1 LTR MaLR 194 336 -108 3 865 207 254 49 134 chr11 36794931 36795013 -85048843 + L2a LINE L2 3298 3411 -15 3 865 691 192 45 30 chr11 36795759 36795893 -85047963 - B1_Mur3 SINE Alu -11 138 3 3 865 657 277 73 50 chr11 36796787 36797087 -85046769 - MER33 DNA MER1_type -16 308 2 3 865 2600 88 62 3 chr11 36797248 36797636 -85046220 + RLTR10A LTR ERVK 1 411 0 3 865 233 310 43 26 chr11 36798858 36798974 -85044882 + MER5A DNA MER1_type 72 189 0 3 865 372 22 0 0 chr11 36799268 36799313 -85044543 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 865 188 143 24 0 chr11 36799313 36799355 -85044501 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 865 21 0 0 0 chr11 36799808 36799829 -85044027 + AT_rich Low_complexity Low_complexity 1 21 0 3 865 525 32 0 0 chr11 36801142 36801205 -85042651 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 865 24 0 0 0 chr11 36802164 36802188 -85041668 + AT_rich Low_complexity Low_complexity 1 24 0 3 865 400 286 69 124 chr11 36804389 36804768 -85039088 + ORR1E LTR MaLR 1 358 -1 3 865 513 0 0 0 chr11 36805760 36805817 -85038039 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 865 261 57 0 0 chr11 36805817 36805852 -85038004 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 4 865 325 291 64 51 chr11 36807280 36807436 -85036420 - Kanga1a DNA Tc2 -246 508 351 4 865 283 0 0 67 chr11 36807468 36807513 -85036343 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 865 199 204 20 39 chr11 36807738 36807789 -85036067 - L2a LINE L2 -1 3425 3376 4 865 279 327 104 19 chr11 36808868 36808974 -85034882 + PB1D10 SINE Alu 1 115 -2 4 865 269 135 0 19 chr11 36809090 36809143 -85034713 + CT-rich Low_complexity Low_complexity 1 52 0 4 865 215 200 0 0 chr11 36809685 36809720 -85034136 + polypurine Low_complexity Low_complexity 1 35 0 4 865 1135 76 0 0 chr11 36809788 36809933 -85033923 + B1_Mus1 SINE Alu 1 145 -3 4 865 216 0 0 0 chr11 36809933 36809957 -85033899 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 865 387 296 12 76 chr11 36810864 36811036 -85032820 - RSINE1 SINE B4 -1 164 4 4 865 193 293 39 29 chr11 36811036 36811133 -85032723 + L3 LINE CR1 2138 2235 -2254 4 865 186 351 37 90 chr11 36811228 36811472 -85032384 + L2c LINE L2 3089 3319 -68 4 865 616 274 34 6 chr11 36811813 36811989 -85031867 - B3A SINE B2 -16 182 2 4 865 739 358 7 39 chr11 36812153 36812432 -85031424 + B4A SINE B4 15 284 -8 4 865 29 47 0 0 chr11 36812717 36812760 -85031096 + AT_rich Low_complexity Low_complexity 1 43 0 4 865 228 100 0 0 chr11 36813104 36813144 -85030712 + (A)n Simple_repeat Simple_repeat 1 40 0 4 865 23 33 0 0 chr11 36813495 36813525 -85030331 + AT_rich Low_complexity Low_complexity 1 30 0 4 865 549 0 0 0 chr11 36813533 36813594 -85030262 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 865 328 369 14 63 chr11 36813610 36813752 -85030104 - RSINE1 SINE B4 -21 144 10 4 865 395 108 32 11 chr11 36813804 36813898 -85029958 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 865 566 231 138 67 chr11 36813940 36814209 -85029647 + B4A SINE B4 5 292 0 4 865 202 379 76 38 chr11 36816587 36816771 -85027085 + MIR SINE MIR 35 225 -37 4 865 261 0 0 0 chr11 36817122 36817151 -85026705 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 865 30 0 0 0 chr11 36818267 36818297 -85025559 + AT_rich Low_complexity Low_complexity 1 30 0 4 865 347 309 30 24 chr11 36819158 36819324 -85024532 + L1MB7 LINE L1 6009 6175 -9 4 865 188 250 21 0 chr11 36819864 36819912 -85023944 + MER5B DNA MER1_type 5 53 -125 4 865 206 155 35 0 chr11 36820784 36820842 -85023014 + (TCTCTG)n Simple_repeat Simple_repeat 6 65 0 4 865 689 241 24 55 chr11 36821388 36821606 -85022250 - B3A SINE B2 -6 210 5 4 865 618 328 10 15 chr11 36821658 36821862 -85021994 + MLT1A0 LTR MaLR 11 213 -152 4 865 370 263 61 0 chr11 36821877 36821976 -85021880 + MLT1A0 LTR MaLR 261 365 0 4 865 294 95 0 0 chr11 36822546 36822588 -85021268 + (GAA)n Simple_repeat Simple_repeat 2 43 0 4 865 234 231 0 0 chr11 36822961 36823013 -85020843 + (CTG)n Simple_repeat Simple_repeat 1 52 0 4 865 265 305 46 58 chr11 36823276 36823450 -85020406 + MIRb SINE MIR 78 249 -19 4 865 207 0 0 0 chr11 36824060 36824083 -85019773 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 4 865 298 225 14 27 chr11 36824095 36824168 -85019688 + CT-rich Low_complexity Low_complexity 2 73 0 4 865 220 286 0 31 chr11 36824168 36824233 -85019623 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 4 865 451 188 17 0 chr11 36824235 36824352 -85019504 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 865 186 71 0 0 chr11 36824918 36824946 -85018910 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 865 674 276 55 5 chr11 36825173 36825337 -85018519 + B3 SINE B2 1 167 -49 4 865 444 19 0 0 chr11 36825337 36825390 -85018466 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 865 674 276 55 5 chr11 36825390 36825425 -85018431 + B3 SINE B2 168 209 -7 4 865 504 0 0 0 chr11 36825672 36825728 -85018128 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 865 306 0 0 0 chr11 36825728 36825761 -85018095 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 865 1036 65 7 0 chr11 36827683 36827821 -85016035 - B1_Mus1 SINE Alu -1 147 9 4 865 22 0 0 0 chr11 36828340 36828362 -85015494 + AT_rich Low_complexity Low_complexity 1 22 0 4 865 291 54 0 0 chr11 36828481 36828518 -85015338 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 865 184 321 94 12 chr11 36829261 36829346 -85014510 - MIRb SINE MIR -31 237 146 4 865 349 227 40 0 chr11 36830336 36830411 -85013445 - B3 SINE B2 0 216 139 4 865 278 106 21 0 chr11 36830491 36830538 -85013318 + (TCTCCC)n Simple_repeat Simple_repeat 2 49 0 4 865 22 0 0 0 chr11 36830553 36830575 -85013281 + AT_rich Low_complexity Low_complexity 1 22 0 4 865 1080 68 146 12 chr11 36830725 36830889 -85012967 + B2_Mm2 SINE B2 2 187 -8 4 866 255 372 0 0 chr11 36831555 36831641 -85012215 + MIRb SINE MIR 89 174 -94 4 866 255 342 34 0 chr11 36831644 36831761 -85012095 - LTR16A1 LTR ERVL 0 456 336 4 866 340 148 16 32 chr11 36832297 36832360 -85011496 - HAL1-3A_ME LINE L1 -821 2037 1976 4 866 288 0 0 0 chr11 36833613 36833645 -85010211 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 866 450 109 32 32 chr11 36833984 36834079 -85009777 - Lx3A LINE L1 -18 6963 6869 4 866 226 321 38 0 chr11 36834103 36834209 -85009647 + GA-rich Low_complexity Low_complexity 5 114 0 4 866 250 80 40 0 chr11 36834406 36834456 -85009400 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 4 866 931 70 32 0 chr11 36836937 36837095 -85006761 + (CA)n Simple_repeat Simple_repeat 2 164 0 4 866 306 0 0 0 chr11 36837095 36837128 -85006728 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 866 196 327 0 0 chr11 36837412 36837467 -85006389 - L2a LINE L2 -4 3422 3368 4 866 187 333 19 10 chr11 36837545 36837648 -85006208 + MIRb SINE MIR 22 125 -143 4 866 249 289 101 43 chr11 36838895 36839107 -85004749 + MIRb SINE MIR 3 241 -21 4 866 531 0 0 0 chr11 36841085 36841144 -85002712 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 866 199 241 16 79 chr11 36841443 36841506 -85002350 - L3 LINE CR1 -521 3968 3910 4 866 291 253 26 26 chr11 36843065 36843142 -85000714 + ID4 SINE ID 4 80 -3 4 866 230 75 0 48 chr11 36843612 36843654 -85000202 + (ATTG)n Simple_repeat Simple_repeat 4 43 0 4 866 431 301 0 10 chr11 36843654 36843758 -85000098 - B1F SINE Alu -14 135 33 4 866 211 391 29 0 chr11 36844231 36844300 -84999556 + PB1D10 SINE Alu 10 80 -37 4 866 397 305 89 54 chr11 36844852 36845167 -84998689 - LFSINE_Vert SINE SINE -4 455 130 4 866 466 16 16 16 chr11 36847806 36847870 -84995986 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 866 216 67 0 0 chr11 36848057 36848087 -84995769 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 4 866 313 371 67 28 chr11 36848128 36848383 -84995473 - MLT2B2 LTR ERVL -228 287 23 4 866 211 245 19 56 chr11 36848390 36848498 -84995358 + A-rich Low_complexity Low_complexity 5 108 0 4 866 438 95 0 0 chr11 36848502 36848565 -84995291 + Lx LINE L1 6157 6219 -435 4 866 450 300 89 58 chr11 36848744 36848935 -84994921 - B3A SINE B2 -1 197 1 4 866 228 333 65 0 chr11 36852469 36852622 -84991234 + L1MA6 LINE L1 6121 6283 -17 4 866 227 244 25 37 chr11 36853652 36853733 -84990123 + MTEb LTR MaLR 278 357 -22 4 866 908 146 172 0 chr11 36856982 36857174 -84986682 + URR1B DNA MER1_type 1 225 0 4 866 233 171 0 0 chr11 36857770 36857805 -84986051 + 5S rRNA rRNA 1 35 -86 4 866 598 291 61 43 chr11 36857962 36858357 -84985499 + L1MA9 LINE L1 5703 6104 -208 4 866 709 182 106 47 chr11 36860300 36860490 -84983366 - B3 SINE B2 0 198 15 4 866 189 0 0 0 chr11 36860602 36860623 -84983233 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 4 866 188 364 72 80 chr11 36861473 36861724 -84982132 - L2a LINE L2 -264 3162 2914 4 866 24 0 0 0 chr11 36862159 36862183 -84981673 + AT_rich Low_complexity Low_complexity 1 24 0 4 866 361 292 0 94 chr11 36862223 36862329 -84981527 - PB1D7 SINE Alu -22 98 3 4 866 603 81 0 0 chr11 36862337 36862423 -84981433 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 866 185 383 23 32 chr11 36863155 36863371 -84980485 - MIRb SINE MIR 0 268 55 4 866 258 292 120 40 chr11 36864295 36864420 -84979436 + RLTR41 LTR ERV1 78 212 -234 4 866 531 98 0 0 chr11 36864850 36864942 -84978914 + (GA)n Simple_repeat Simple_repeat 2 93 0 4 866 327 113 0 0 chr11 36865722 36865784 -84978072 + (T)n Simple_repeat Simple_repeat 1 62 0 4 866 448 293 138 0 chr11 36866182 36866305 -84977551 - B3 SINE B2 -75 141 2 4 866 234 312 0 60 chr11 36866346 36866424 -84977432 + ID4 SINE ID 14 87 -65 4 866 495 298 15 106 chr11 36866847 36867046 -84976810 + MLT1J2 LTR MaLR 268 448 0 4 866 1169 108 22 22 chr11 36868978 36869158 -84974698 + B2_Mm2 SINE B2 2 181 -14 4 866 838 317 16 40 chr11 36869863 36870116 -84973740 - B4 SINE B4 -6 286 40 4 866 490 324 73 59 chr11 36871981 36872114 -84971742 + MLT1A0 LTR MaLR 30 175 -190 4 866 1101 37 0 0 chr11 36872114 36872248 -84971608 + (TC)n Simple_repeat Simple_repeat 1 134 0 4 866 490 330 85 56 chr11 36872248 36872438 -84971418 + MLT1A0 LTR MaLR 176 374 0 4 866 288 0 0 0 chr11 36872788 36872820 -84971036 + (A)n Simple_repeat Simple_repeat 1 32 0 4 866 338 232 77 109 chr11 36873026 36873273 -84970583 + Lx9 LINE L1 7384 7622 -22 4 866 786 293 52 52 chr11 36873339 36873721 -84970135 - Lx8 LINE L1 -334 7139 6758 4 866 304 310 57 74 chr11 36873711 36873955 -84969901 + Lx8 LINE L1 7179 7418 -55 4 866 213 0 81 0 chr11 36874420 36874457 -84969399 + (TTG)n Simple_repeat Simple_repeat 2 41 0 4 866 198 0 0 0 chr11 36875635 36875657 -84968199 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 866 710 228 0 7 chr11 36876281 36876406 -84967450 + B1_Mur4 SINE Alu 15 139 -11 5 866 315 0 0 0 chr11 36876406 36876441 -84967415 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 866 710 228 0 7 chr11 36876441 36876452 -84967404 + B1_Mur4 SINE Alu 140 150 0 5 866 247 270 202 0 chr11 36876668 36876757 -84967099 - B1F2 SINE Alu -37 112 6 5 866 29 0 0 0 chr11 36876775 36876804 -84967052 + AT_rich Low_complexity Low_complexity 1 29 0 5 866 256 341 0 12 chr11 36879475 36879558 -84964298 - ID4 SINE ID 0 83 2 5 866 399 41 0 0 chr11 36879790 36879839 -84964017 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 866 369 326 58 29 chr11 36879861 36880000 -84963856 - B3A SINE B2 -55 143 1 5 866 21 0 0 0 chr11 36880131 36880152 -84963704 + AT_rich Low_complexity Low_complexity 1 21 0 5 866 237 273 0 0 chr11 36880253 36880319 -84963537 + MIR SINE MIR 141 206 -56 5 866 230 360 0 10 chr11 36880484 36880585 -84963271 + MIR SINE MIR 36 135 -127 5 866 237 65 0 0 chr11 36880942 36880973 -84962883 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 866 472 250 44 6 chr11 36881499 36881719 -84962137 - L1MA4 LINE L1 -376 5936 5696 5 866 415 322 33 8 chr11 36882046 36882168 -84961688 + ID_B1 SINE B4 93 217 -7 5 866 247 312 82 34 chr11 36882168 36882190 -84961666 - YREP_Mm Unknown Unknown -1503 307 157 5 866 221 231 0 0 chr11 36882192 36882258 -84961598 + polypurine Low_complexity Low_complexity 1 66 0 5 866 1248 211 75 21 chr11 36882747 36883120 -84960736 + Lx9 LINE L1 7121 7513 -131 5 866 377 207 59 0 chr11 36883251 36883420 -84960436 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 866 186 43 0 0 chr11 36883443 36883466 -84960390 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 866 297 295 210 17 chr11 36883610 36883786 -84960070 + B3 SINE B2 1 210 -6 5 866 252 294 36 81 chr11 36883982 36884093 -84959763 - L2a LINE L2 0 3426 3321 5 866 225 0 0 0 chr11 36884243 36884268 -84959588 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 866 198 143 0 0 chr11 36885477 36885512 -84958344 + (A)n Simple_repeat Simple_repeat 1 35 0 5 866 255 103 0 0 chr11 36887238 36887277 -84956579 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 866 261 0 0 0 chr11 36887277 36887305 -84956551 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 866 262 171 29 0 chr11 36887317 36887387 -84956469 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 5 866 227 0 58 77 chr11 36887804 36887856 -84956000 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 5 866 887 63 134 0 chr11 36887858 36887985 -84955871 - B1_Mus1 SINE Alu -1 147 4 5 866 293 303 108 43 chr11 36888025 36888256 -84955600 + MLT1D LTR MaLR 200 445 -60 5 866 25 31 0 0 chr11 36888857 36888889 -84954967 + AT_rich Low_complexity Low_complexity 1 32 0 5 866 405 39 0 0 chr11 36889438 36889489 -84954367 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 866 27 29 0 0 chr11 36889654 36889688 -84954168 + AT_rich Low_complexity Low_complexity 1 34 0 5 866 202 351 88 22 chr11 36892259 36892396 -84951460 + MIRb SINE MIR 83 228 -40 5 866 26 30 0 0 chr11 36892735 36892768 -84951088 + AT_rich Low_complexity Low_complexity 1 33 0 5 866 224 213 0 16 chr11 36895023 36895085 -84948771 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 866 361 303 40 12 chr11 36895355 36895501 -84948355 + MLT1A LTR MaLR 244 390 0 5 866 21 36 0 0 chr11 36895699 36895727 -84948129 + AT_rich Low_complexity Low_complexity 1 28 0 5 866 25 0 0 0 chr11 36896125 36896150 -84947706 + AT_rich Low_complexity Low_complexity 1 25 0 5 866 23 68 0 0 chr11 36896227 36896271 -84947585 + AT_rich Low_complexity Low_complexity 1 44 0 5 866 214 208 0 36 chr11 36898058 36898113 -84945743 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 5 866 654 75 0 0 chr11 36898115 36898208 -84945648 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 5 866 925 277 63 13 chr11 36898844 36899144 -84944712 - Charlie16a DNA MER1_type -9 333 19 5 866 227 332 43 48 chr11 36899923 36900132 -84943724 + L4 LINE RTE 1259 1466 -563 5 866 198 336 32 89 chr11 36902741 36902898 -84940958 - L2c LINE L2 -56 3331 3184 5 866 288 298 81 92 chr11 36902992 36903166 -84940690 + MER5A DNA MER1_type 6 177 -12 5 866 500 153 20 0 chr11 36904789 36904887 -84938969 + CT-rich Low_complexity Low_complexity 3 102 0 5 866 448 347 96 54 chr11 36905350 36905630 -84938226 - B4 SINE B4 0 292 1 5 866 443 303 58 102 chr11 36906136 36906430 -84937426 - B4A SINE B4 0 292 12 5 866 229 346 49 0 chr11 36906842 36906923 -84936933 - MER5A DNA MER1_type -1 188 104 5 866 22 88 0 0 chr11 36908027 36908084 -84935772 + AT_rich Low_complexity Low_complexity 1 57 0 5 866 265 303 39 48 chr11 36909826 36909930 -84933926 + MIRc SINE MIR 100 202 -66 5 866 479 362 4 30 chr11 36910327 36910589 -84933267 + L2a LINE L2 2912 3166 -260 5 866 270 0 0 0 chr11 36911079 36911109 -84932747 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 866 536 263 17 0 chr11 36911247 36911365 -84932491 + B3A SINE B2 8 127 -71 5 866 701 95 14 49 chr11 36911605 36911749 -84932107 + CT-rich Low_complexity Low_complexity 2 140 0 5 866 486 0 0 0 chr11 36912303 36912357 -84931499 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 866 544 295 56 34 chr11 36912524 36912858 -84930998 + MLT1A1 LTR MaLR 24 404 -4 5 866 21 36 0 0 chr11 36913000 36913028 -84930828 + AT_rich Low_complexity Low_complexity 1 28 0 5 866 1184 5 75 0 chr11 36914974 36915175 -84928681 + (TATATG)n Simple_repeat Simple_repeat 1 215 0 5 866 216 97 0 0 chr11 36915193 36915224 -84928632 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 866 3877 77 0 0 chr11 36915356 36915864 -84927992 + L1Md_T LINE L1 6075 6582 0 5 866 461 341 15 0 chr11 36915899 36916031 -84927825 + ID_B1 SINE B4 84 217 -7 5 866 1130 218 24 0 chr11 36916043 36916254 -84927602 + B3 SINE B2 1 216 0 5 866 22 70 0 0 chr11 36916254 36916297 -84927559 + AT_rich Low_complexity Low_complexity 1 43 0 5 866 807 336 33 33 chr11 36919096 36919431 -84924425 + ORR1E LTR MaLR 25 359 0 5 866 438 333 39 9 chr11 36919487 36919647 -84924209 + ID_B1 SINE B4 78 245 -47 5 866 240 290 0 28 chr11 36920137 36920208 -84923648 + PB1 SINE Alu 7 75 -52 5 866 222 118 0 0 chr11 36920629 36920663 -84923193 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 5 866 227 140 20 0 chr11 36921136 36921186 -84922670 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 866 2024 191 36 53 chr11 36922725 36923199 -84920657 - RMER4A LTR ERVK 0 466 1 5 866 390 129 0 0 chr11 36925053 36925115 -84918741 + (GGA)n Simple_repeat Simple_repeat 3 64 0 5 866 1296 43 0 0 chr11 36926517 36926679 -84917177 + L1Md_T LINE L1 6421 6582 0 5 866 239 261 29 0 chr11 36927287 36927358 -84916498 - MIRb SINE MIR -35 233 152 5 866 327 104 0 0 chr11 36927966 36928014 -84915842 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 866 534 324 0 7 chr11 36928078 36928218 -84915638 + ORR1E LTR MaLR 4 142 -217 5 866 588 95 0 0 chr11 36929304 36929388 -84914468 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 866 291 54 0 0 chr11 36929414 36929451 -84914405 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 866 250 278 0 0 chr11 36930133 36930187 -84913669 - PB1D10 SINE Alu -8 109 56 5 866 581 211 49 98 chr11 36930265 36930428 -84913428 + B4 SINE B4 69 223 -69 5 866 1116 63 0 0 chr11 36930288 36930431 -84913425 + B1_Mus1 SINE Alu 6 148 0 5 866 234 179 0 0 chr11 36931554 36931610 -84912246 + T-rich Low_complexity Low_complexity 1 56 0 5 866 185 333 132 26 chr11 36932101 36932252 -84911604 - MIRb SINE MIR -36 232 66 5 866 468 0 0 0 chr11 36932295 36932347 -84911509 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 866 384 22 0 0 chr11 36932348 36932393 -84911463 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 866 205 113 0 70 chr11 36932394 36932451 -84911405 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 866 402 21 0 0 chr11 36933218 36933265 -84910591 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 866 24 32 0 0 chr11 36933618 36933649 -84910207 + AT_rich Low_complexity Low_complexity 1 31 0 5 866 995 309 35 14 chr11 36933713 36933995 -84909861 + B4A SINE B4 3 290 -2 5 866 234 128 0 0 chr11 36934014 36934053 -84909803 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 866 315 0 0 0 chr11 36934053 36934087 -84909769 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 866 260 264 28 0 chr11 36934139 36934211 -84909645 + B1_Mur2 SINE Alu 74 147 -2 5 866 200 209 23 23 chr11 36934215 36934303 -84909553 + GA-rich Low_complexity Low_complexity 3 90 0 5 866 3055 131 45 8 chr11 36934372 36934886 -84908970 + Lx3C LINE L1 6435 6967 -9 5 866 23 33 0 0 chr11 36934893 36934923 -84908933 + AT_rich Low_complexity Low_complexity 1 30 0 5 866 254 242 0 16 chr11 36936385 36936448 -84907408 - B1F SINE Alu -1 148 87 5 866 431 352 8 0 chr11 36937464 36937589 -84906267 + B1F SINE Alu 1 126 -23 5 866 342 138 0 0 chr11 36938268 36938326 -84905530 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 866 639 330 25 36 chr11 36938334 36938611 -84905245 + B4A SINE B4 1 274 -18 5 866 348 125 0 0 chr11 36938690 36938738 -84905118 + HAL1-3A_ME LINE L1 1976 2023 -835 5 866 189 0 0 0 chr11 36938805 36938826 -84905030 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 866 763 192 7 0 chr11 36939736 36939882 -84903974 - URR1B DNA MER1_type 0 225 79 6 866 188 330 56 89 chr11 36940288 36940556 -84903300 + MIRb SINE MIR 5 263 -5 6 866 22 0 0 0 chr11 36943774 36943796 -84900060 + AT_rich Low_complexity Low_complexity 1 22 0 6 866 208 347 19 47 chr11 36945073 36945179 -84898677 + MER5B DNA MER1_type 17 119 -59 6 866 213 328 0 0 chr11 36945195 36945262 -84898594 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 866 3782 65 18 6 chr11 36945964 36946460 -84897396 + L1Md_F2 LINE L1 6081 6582 0 6 866 447 19 0 0 chr11 36947143 36947195 -84896661 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 866 915 290 4 47 chr11 36947209 36947466 -84896390 - B4A SINE B4 -43 249 4 6 866 308 330 20 40 chr11 36947578 36947679 -84896177 - PB1 SINE Alu -28 99 1 6 866 6043 89 19 2 chr11 36947915 36948748 -84895108 + L1_Mus2 LINE L1 5720 6566 0 6 866 597 14 0 0 chr11 36950351 36950421 -84893435 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 866 284 290 97 0 chr11 36950559 36950683 -84893173 - Tigger7 DNA MER2_type -48 2443 2308 6 866 706 356 22 26 chr11 36950689 36950957 -84892899 - Tigger7 DNA MER2_type -2202 289 23 6 866 492 301 80 21 chr11 36951242 36951487 -84892369 + MIR SINE MIR 1 262 0 6 866 22 0 0 0 chr11 36951710 36951732 -84892124 + AT_rich Low_complexity Low_complexity 1 22 0 6 866 265 337 70 0 chr11 36951878 36951964 -84891892 - PB1D10 SINE Alu -4 113 22 6 866 347 41 0 20 chr11 36952440 36952490 -84891366 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 866 398 324 0 5 chr11 36952523 36952668 -84891188 - Lx7 LINE L1 -737 6736 6595 6 866 2685 49 0 0 chr11 36952710 36953039 -84890817 - L1_Mus1 LINE L1 -1 6566 6238 6 866 1478 302 34 11 chr11 36953117 36953589 -84890267 + Lx8 LINE L1 6850 7332 -141 6 866 732 299 135 47 chr11 36953817 36953884 -84889972 - MER82 DNA MER2_type -181 472 387 6 866 468 0 0 0 chr11 36953884 36953936 -84889920 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 866 732 299 135 47 chr11 36953936 36954290 -84889566 - MER82 DNA MER2_type -267 386 15 6 866 230 365 0 0 chr11 36958256 36958341 -84885515 + ID4 SINE ID 14 98 -54 6 866 234 0 0 0 chr11 36958829 36958855 -84885001 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 866 1472 265 74 5 chr11 36959352 36959743 -84884113 - MTD LTR MaLR 0 419 2 6 866 274 311 14 41 chr11 36960753 36960858 -84882998 + PB1D10 SINE Alu 1 107 -42 6 866 253 296 40 30 chr11 36961089 36961190 -84882666 + PB1D10 SINE Alu 4 105 -12 6 866 292 18 0 127 chr11 36961657 36961720 -84882136 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 6 866 783 199 28 0 chr11 36961725 36961866 -84881990 + B1_Mus2 SINE Alu 3 147 0 6 866 324 188 0 0 chr11 36961866 36961930 -84881926 + A-rich Low_complexity Low_complexity 1 64 0 6 866 241 250 0 35 chr11 36962165 36962223 -84881633 + polypurine Low_complexity Low_complexity 2 57 0 6 867 243 0 0 0 chr11 36963386 36963413 -84880443 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 867 319 296 38 38 chr11 36963697 36963883 -84879973 + MER33 DNA MER1_type 138 323 -1 6 867 237 65 0 0 chr11 36964138 36964169 -84879687 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 867 303 28 0 0 chr11 36966013 36966049 -84877807 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 867 838 52 8 8 chr11 36966062 36966179 -84877677 + (GAA)n Simple_repeat Simple_repeat 1 117 0 6 867 28 29 0 0 chr11 36966919 36966954 -84876902 + AT_rich Low_complexity Low_complexity 1 35 0 6 867 249 282 0 0 chr11 36967965 36968036 -84875820 + C-rich Low_complexity Low_complexity 1 71 0 6 867 456 62 0 0 chr11 36971192 36971256 -84872600 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 867 28 0 0 0 chr11 36971369 36971397 -84872459 + AT_rich Low_complexity Low_complexity 1 28 0 6 867 207 0 0 0 chr11 36971902 36971925 -84871931 + (A)n Simple_repeat Simple_repeat 1 23 0 6 867 285 360 24 16 chr11 36972248 36972375 -84871481 - MER119 DNA MER1_type -1 582 455 6 867 585 301 177 56 chr11 36973359 36973935 -84869921 + L1MCa LINE L1 417 1062 -5446 6 867 255 300 155 14 chr11 36973966 36974179 -84869677 + L1MCa LINE L1 1181 1423 -5085 6 867 658 272 63 35 chr11 36974471 36974788 -84869068 - MTD LTR MaLR -48 371 1 6 867 658 252 50 14 chr11 36974819 36975097 -84868759 + L1MCa LINE L1 1569 1856 -4652 6 867 289 289 184 20 chr11 36975206 36975427 -84868429 + L1MCa LINE L1 2056 2321 -4187 6 867 2053 154 17 37 chr11 36975427 36975837 -84868019 + Lx LINE L1 6252 6653 -1 6 867 289 289 184 20 chr11 36975837 36975908 -84867948 + L1MCa LINE L1 2322 2396 -4112 6 867 784 308 11 4 chr11 36975897 36976177 -84867679 + L1MCa LINE L1 2747 3028 -3293 6 867 892 275 138 23 chr11 36976182 36976833 -84867023 + L1MCa LINE L1 3142 3867 -2454 6 867 450 377 6 12 chr11 36977813 36977982 -84865874 - B4A SINE B4 -123 169 2 6 867 324 0 0 0 chr11 36979790 36979826 -84864030 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 867 4498 67 81 0 chr11 36980702 36981316 -84862540 - L1_Mm LINE L1 -234 5649 4986 6 867 21 36 0 0 chr11 36982102 36982130 -84861726 + AT_rich Low_complexity Low_complexity 1 28 0 6 867 305 333 10 0 chr11 36984271 36984370 -84859486 - ID_B1 SINE B4 0 224 125 6 867 314 375 24 30 chr11 36985734 36985899 -84857957 - MIRb SINE MIR -26 242 79 6 867 199 306 121 43 chr11 36987567 36987683 -84856173 + MIRc SINE MIR 24 148 -120 6 867 462 75 0 0 chr11 36988141 36988208 -84855648 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 867 21 0 0 0 chr11 36990127 36990148 -84853708 + AT_rich Low_complexity Low_complexity 1 21 0 6 867 416 357 68 99 chr11 36992014 36992306 -84851550 - LTR78 LTR ERV1 -169 1135 853 6 867 21 0 0 0 chr11 36993457 36993478 -84850378 + AT_rich Low_complexity Low_complexity 1 21 0 6 867 254 198 64 28 chr11 36994645 36994754 -84849102 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 6 867 250 324 28 0 chr11 36995787 36995858 -84847998 - ID4_ SINE ID -6 77 5 6 867 253 291 64 55 chr11 36995864 36995973 -84847883 - B1F SINE Alu 0 149 40 6 867 25 51 0 0 chr11 36996311 36996350 -84847506 + AT_rich Low_complexity Low_complexity 1 39 0 6 867 29 47 0 0 chr11 36996449 36996492 -84847364 + AT_rich Low_complexity Low_complexity 1 43 0 6 867 231 308 12 37 chr11 36996522 36996603 -84847253 + ID4_ SINE ID 2 80 -3 6 867 363 23 0 0 chr11 36997400 36997444 -84846412 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 867 629 193 0 7 chr11 36997444 36997590 -84846266 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 867 261 210 0 0 chr11 36997624 36997686 -84846170 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 867 569 170 0 9 chr11 37001705 37001818 -84842038 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 867 22 35 0 0 chr11 37002113 37002142 -84841714 + AT_rich Low_complexity Low_complexity 1 29 0 2 867 214 171 29 0 chr11 37002144 37002214 -84841642 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 867 744 137 13 7 chr11 37002936 37003090 -84840766 + (TA)n Simple_repeat Simple_repeat 2 156 0 4 867 342 67 0 0 chr11 37003656 37003701 -84840155 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 5 867 266 73 0 24 chr11 37004231 37004273 -84839583 + (TATG)n Simple_repeat Simple_repeat 4 44 0 6 867 1057 191 134 50 chr11 37004682 37005041 -84838815 - Lx9 LINE L1 -49 7595 7207 7 867 624 27 0 0 chr11 37005065 37005139 -84838717 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 8 867 1066 189 27 5 chr11 37005152 37005375 -84838481 + Lx9 LINE L1 6763 6990 -654 9 867 6216 45 0 0 chr11 37005547 37006298 -84837558 + L1Md_F2 LINE L1 5820 6570 -12 1 867 346 254 116 26 chr11 37006373 37006563 -84837293 + Charlie5 DNA MER1_type 2382 2588 -36 1 867 547 300 128 64 chr11 37007957 37008160 -84835696 + B4A SINE B4 2 217 -75 1 867 237 284 147 15 chr11 37008371 37008507 -84835349 + MER53 DNA hAT 19 172 -21 1 867 210 250 15 118 chr11 37008949 37009017 -84834839 - MIRb SINE MIR -172 96 36 1 867 3240 100 17 2 chr11 37010294 37010763 -84833093 + Lx LINE L1 6171 6646 -8 1 867 873 303 131 12 chr11 37011444 37011781 -84832075 + MTEa LTR MaLR 3 379 0 1 867 245 311 0 0 chr11 37012349 37012410 -84831446 + ID4 SINE ID 1 61 -22 1 867 276 261 11 21 chr11 37014495 37014589 -84829267 - L1M3 LINE L1 -307 5861 5769 1 867 662 339 35 14 chr11 37015230 37015514 -84828342 + B4 SINE B4 3 292 0 1 867 366 91 0 0 chr11 37015527 37015582 -84828274 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 867 201 173 19 37 chr11 37016779 37016833 -84827023 + (CTTTG)n Simple_repeat Simple_repeat 2 54 0 2 867 1390 30 0 0 chr11 37017185 37017352 -84826504 + L1Md_F2 LINE L1 5420 5586 -297 2 867 8087 44 3 2 chr11 37017352 37018345 -84825511 + L1Md_F2 LINE L1 5587 6580 -2 2 867 414 39 0 0 chr11 37019067 37019119 -84824737 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 867 482 31 16 0 chr11 37020117 37020181 -84823675 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 867 231 152 0 0 chr11 37021338 37021384 -84822472 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 867 465 156 31 62 chr11 37022464 37022590 -84821266 + B1_Mm SINE Alu 8 125 -23 2 867 431 195 33 39 chr11 37023769 37023950 -84819906 + RMER17C LTR ERVK 98 277 -133 2 867 222 118 0 0 chr11 37023951 37023985 -84819871 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2 867 225 186 178 44 chr11 37024328 37024418 -84819438 + Charlie25 DNA MER1_type 1489 1590 -934 2 867 251 177 0 16 chr11 37025312 37025375 -84818481 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 3 867 207 0 0 0 chr11 37027735 37027758 -84816098 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 867 514 340 6 0 chr11 37030541 37030700 -84813156 + RSINE1 SINE B4 2 161 -4 3 867 258 81 0 0 chr11 37030915 37030952 -84812904 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 867 259 349 78 23 chr11 37031597 37031726 -84812130 + L2 LINE L2 2837 2972 -447 3 867 336 296 114 34 chr11 37033394 37033569 -84810287 - MER58B DNA MER1_type -132 209 21 3 867 343 224 14 20 chr11 37033876 37034022 -84809834 + (TA)n Simple_repeat Simple_repeat 1 145 0 3 867 195 42 0 0 chr11 37034044 37034068 -84809788 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 867 22 35 0 0 chr11 37037290 37037319 -84806537 + AT_rich Low_complexity Low_complexity 1 29 0 3 867 459 0 0 0 chr11 37038439 37038490 -84805366 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 867 351 0 0 0 chr11 37038490 37038528 -84805328 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 867 265 262 16 0 chr11 37042684 37042745 -84801111 - BC1_Mm scRNA scRNA -76 76 15 4 867 25 31 0 0 chr11 37043219 37043251 -84800605 + AT_rich Low_complexity Low_complexity 1 32 0 4 867 21 0 0 0 chr11 37044605 37044626 -84799230 + AT_rich Low_complexity Low_complexity 1 21 0 4 867 254 51 51 0 chr11 37047773 37047812 -84796044 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 4 867 188 67 0 32 chr11 37049254 37049285 -84794571 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 4 867 284 127 0 18 chr11 37049609 37049665 -84794191 + (CTG)n Simple_repeat Simple_repeat 1 55 0 4 867 372 241 0 0 chr11 37049830 37049946 -84793910 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 867 195 283 104 78 chr11 37051315 37051430 -84792426 - L2b LINE L2 -5 3370 3253 4 867 207 0 0 0 chr11 37051828 37051851 -84792005 + (T)n Simple_repeat Simple_repeat 1 23 0 4 867 630 209 250 18 chr11 37053598 37053810 -84790046 + MTE2b LTR MaLR 59 313 -66 5 867 944 114 7 0 chr11 37053810 37053959 -84789897 + (TTCC)n Simple_repeat Simple_repeat 1 150 0 5 867 630 221 134 30 chr11 37053959 37054014 -84789842 + MTE2b LTR MaLR 314 378 -1 5 867 327 306 63 42 chr11 37056352 37056543 -84787313 - MIR SINE MIR 0 262 68 5 867 234 91 45 0 chr11 37056694 37056760 -84787096 - IAPLTR2_Mm LTR ERVK -196 279 211 5 867 956 295 83 20 chr11 37056828 37057177 -84786679 + MTEa LTR MaLR 1 371 -8 5 867 7820 43 0 0 chr11 37057552 37058518 -84785338 - L1Md_F2 LINE L1 -1134 4749 3784 5 867 9834 40 1 1 chr11 37058515 37060388 -84783468 + L1Md_F2 LINE L1 4709 6582 0 5 867 324 288 50 104 chr11 37064933 37065115 -84778741 + MER5B DNA MER1_type 7 178 0 5 867 264 304 79 47 chr11 37065342 37065532 -84778324 + MIR SINE MIR 67 262 0 5 867 613 126 18 0 chr11 37067723 37067834 -84776022 + (TC)n Simple_repeat Simple_repeat 2 114 0 5 867 810 184 0 21 chr11 37067873 37068017 -84775839 - B1_Mus2 SINE Alu -6 141 1 5 867 243 287 9 122 chr11 37068025 37068132 -84775724 - MLT1A0 LTR MaLR -270 95 1 6 867 575 285 35 45 chr11 37068494 37068696 -84775160 + B3 SINE B2 1 200 -16 6 867 22 0 0 0 chr11 37068771 37068793 -84775063 + AT_rich Low_complexity Low_complexity 1 22 0 6 867 293 0 27 0 chr11 37070126 37070163 -84773693 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 867 214 186 0 0 chr11 37070169 37070212 -84773644 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 867 938 227 53 0 chr11 37070953 37071160 -84772696 + URR1A DNA MER1_type 3 220 -6 6 867 272 328 115 31 chr11 37071208 37071400 -84772456 + MER20 DNA MER1_type 8 215 -4 6 867 667 22 22 0 chr11 37072182 37072271 -84771585 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 867 330 26 0 0 chr11 37073068 37073107 -84770749 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 867 236 272 65 0 chr11 37073758 37073850 -84770006 - L1M4 LINE L1 -300 5884 5787 6 867 180 0 0 0 chr11 37073950 37073970 -84769886 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 867 187 306 65 0 chr11 37074488 37074550 -84769306 + L2a LINE L2 3049 3114 -312 7 867 3901 165 81 3 chr11 37075245 37075313 -84768543 - Lx LINE L1 -7 6647 6580 7 867 216 0 0 0 chr11 37075313 37075337 -84768519 + (CCCCCT)n Simple_repeat Simple_repeat 1 24 0 7 867 3901 165 81 3 chr11 37075337 37075985 -84767871 - Lx LINE L1 -75 6579 5877 7 867 331 307 48 30 chr11 37076114 37076282 -84767574 - L1M5 LINE L1 -1933 4213 4043 7 867 226 257 175 39 chr11 37076835 37077297 -84766559 - L1M5 LINE L1 -2765 3381 2857 7 867 337 309 158 72 chr11 37077299 37077634 -84766222 + MLT1A0 LTR MaLR 1 364 -1 7 867 217 328 0 17 chr11 37077670 37077729 -84766127 - BC1_Mm scRNA scRNA -75 77 20 7 867 249 323 0 0 chr11 37077678 37077743 -84766113 - ID SINE ID -154 70 6 7 867 366 23 0 0 chr11 37078025 37078068 -84765788 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 867 352 293 68 39 chr11 37078068 37078274 -84765582 - MT2A LTR ERVL -234 299 88 7 867 26 0 0 0 chr11 37078535 37078561 -84765295 + AT_rich Low_complexity Low_complexity 1 26 0 8 867 456 19 0 0 chr11 37078681 37078734 -84765122 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 867 737 229 12 35 chr11 37078811 37078983 -84764873 - B2_Mm2 SINE B2 -26 169 2 8 867 25 31 0 0 chr11 37079837 37079869 -84763987 + AT_rich Low_complexity Low_complexity 1 32 0 8 867 187 327 198 0 chr11 37079930 37080031 -84763825 + MIR SINE MIR 65 185 -77 8 867 727 304 38 24 chr11 37080725 37080937 -84762919 - MER58A DNA MER1_type -4 220 6 8 867 237 108 0 0 chr11 37080981 37081018 -84762838 + (T)n Simple_repeat Simple_repeat 1 37 0 8 867 25 51 0 0 chr11 37081634 37081673 -84762183 + AT_rich Low_complexity Low_complexity 1 39 0 8 867 606 14 0 0 chr11 37081823 37081894 -84761962 + (TTTCC)n Simple_repeat Simple_repeat 4 74 0 8 867 545 305 20 35 chr11 37081948 37082145 -84761711 + B3A SINE B2 5 198 0 8 867 189 0 0 0 chr11 37082356 37082377 -84761479 + (T)n Simple_repeat Simple_repeat 1 21 0 9 867 1229 34 0 0 chr11 37082377 37082524 -84761332 - B1_Mus2 SINE Alu 0 147 1 9 867 375 313 126 39 chr11 37083347 37083471 -84760385 + MER74A LTR ERVL 1 211 -347 9 867 369 0 0 0 chr11 37083471 37083512 -84760344 + (TC)n Simple_repeat Simple_repeat 1 41 0 9 867 453 66 0 0 chr11 37083512 37083572 -84760284 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 867 375 309 97 22 chr11 37083572 37083743 -84760113 + MER74A LTR ERVL 212 395 -163 9 867 21 0 0 0 chr11 37083842 37083863 -84759993 + AT_rich Low_complexity Low_complexity 1 21 0 9 867 332 349 18 9 chr11 37083863 37083973 -84759883 - PB1D7 SINE Alu 0 120 10 9 867 259 276 35 13 chr11 37084020 37084106 -84759750 + MER74A LTR ERVL 468 594 -28 9 867 387 0 0 0 chr11 37084122 37084165 -84759691 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 867 513 0 0 0 chr11 37084165 37084221 -84759635 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 867 412 338 14 7 chr11 37084330 37084473 -84759383 - B4A SINE B4 -133 159 16 9 867 258 32 0 0 chr11 37085619 37085650 -84758206 + (T)n Simple_repeat Simple_repeat 1 31 0 1 867 1647 233 19 11 chr11 37086729 37087094 -84756762 - ORR1D2 LTR MaLR 0 370 3 1 867 553 252 38 8 chr11 37087397 37087529 -84756327 + MLT1L LTR MaLR 461 596 -14 1 867 923 43 86 7 chr11 37088366 37088506 -84755350 - L1_Mus3 LINE L1 -12 6626 6476 1 867 381 323 134 27 chr11 37088650 37088911 -84754945 - L1MC3 LINE L1 -596 7189 6901 1 867 633 344 65 24 chr11 37089052 37089589 -84754267 - L1MC3 LINE L1 -1055 6730 6172 1 867 218 263 0 0 chr11 37089962 37090019 -84753837 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 867 306 240 20 0 chr11 37090021 37090121 -84753735 + (CATATA)n Simple_repeat Simple_repeat 4 105 0 1 867 560 150 27 48 chr11 37090215 37090362 -84753494 - Lx3B LINE L1 0 6973 6830 1 867 742 238 88 50 chr11 37090591 37091143 -84752713 - L1MCa LINE L1 -5130 1621 962 1 867 1293 91 27 5 chr11 37091456 37091644 -84752212 + B2_Mm2 SINE B2 2 193 -2 1 867 793 204 0 20 chr11 37091717 37091730 -84752126 - B1_Mus1 SINE Alu -1 147 137 1 867 242 29 0 28 chr11 37091730 37091766 -84752090 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 1 867 793 204 0 20 chr11 37091766 37091902 -84751954 - B1_Mus1 SINE Alu -12 136 1 1 867 227 290 14 14 chr11 37092185 37092255 -84751601 - RLTR16 LTR ERVK -310 195 126 1 867 24 32 0 0 chr11 37092863 37092894 -84750962 + AT_rich Low_complexity Low_complexity 1 31 0 1 867 264 284 11 64 chr11 37092946 37093134 -84750722 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 868 398 168 9 26 chr11 37094307 37094423 -84749433 + (TA)n Simple_repeat Simple_repeat 1 114 0 1 868 1674 101 15 8 chr11 37094515 37094774 -84749082 - L1_Mus2 LINE L1 0 6566 6306 1 868 23 0 0 0 chr11 37094933 37094956 -84748900 + AT_rich Low_complexity Low_complexity 1 23 0 1 868 21 71 0 0 chr11 37095643 37095685 -84748171 + AT_rich Low_complexity Low_complexity 1 42 0 1 868 21 71 0 0 chr11 37095714 37095756 -84748100 + AT_rich Low_complexity Low_complexity 1 42 0 1 868 22 0 0 0 chr11 37095884 37095906 -84747950 + AT_rich Low_complexity Low_complexity 1 22 0 1 868 925 271 65 27 chr11 37096676 37096938 -84746918 + Lx8 LINE L1 6526 6797 -676 1 868 667 22 22 0 chr11 37096949 37097038 -84746818 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1 868 446 282 104 27 chr11 37097279 37097380 -84746476 + Lx8 LINE L1 7230 7336 -137 1 868 495 82 0 0 chr11 37097380 37097453 -84746403 + (CCAA)n Simple_repeat Simple_repeat 1 73 0 1 868 446 282 104 27 chr11 37097453 37097573 -84746283 + Lx8 LINE L1 7337 7468 -5 1 868 971 299 145 8 chr11 37097623 37098281 -84745575 + L1MA9 LINE L1 4901 5648 -652 1 868 396 0 0 0 chr11 37098535 37098579 -84745277 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 868 396 0 0 0 chr11 37098579 37098622 -84745234 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 868 292 270 29 29 chr11 37098798 37098901 -84744955 + L1MA9 LINE L1 5812 5914 -398 1 868 235 302 14 58 chr11 37098959 37099163 -84744693 + L1MA9 LINE L1 6089 6278 -56 1 868 223 373 25 25 chr11 37099214 37099335 -84744521 - L2 LINE L2 -660 2759 2639 1 868 34300 77 14 2 chr11 37099729 37105939 -84737917 - L1Md_F2 LINE L1 -13 6569 286 1 868 21 71 0 0 chr11 37105947 37105989 -84737867 + AT_rich Low_complexity Low_complexity 1 42 0 1 868 2148 325 83 26 chr11 37106406 37107367 -84736489 - Lx8 LINE L1 -141 7332 6317 1 868 1237 263 26 26 chr11 37107588 37107935 -84735921 + MTD LTR MaLR 73 419 0 1 868 312 0 20 40 chr11 37108407 37108457 -84735399 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 1 868 230 263 12 50 chr11 37108457 37108537 -84735319 - MER63D DNA AcHobo -663 398 322 1 868 457 271 207 32 chr11 37108632 37108966 -84734890 - L2a LINE L2 -215 3211 2821 1 868 456 19 0 0 chr11 37110769 37110822 -84733034 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 868 23 0 0 0 chr11 37111503 37111526 -84732330 + AT_rich Low_complexity Low_complexity 1 23 0 1 868 222 171 0 0 chr11 37111703 37111744 -84732112 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1 868 564 56 0 0 chr11 37111746 37111818 -84732038 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 1 868 8219 189 106 41 chr11 37112309 37113470 -84730386 + Lx5 LINE L1 882 2060 -3817 1 868 239 54 27 0 chr11 37113470 37113507 -84730349 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 868 8219 177 43 47 chr11 37113507 37114541 -84729315 + Lx5 LINE L1 2061 3148 -2729 1 868 7278 178 51 12 chr11 37114541 37116032 -84727824 + Lx5 LINE L1 5502 7047 -3 1 868 411 107 0 0 chr11 37116037 37116112 -84727744 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 868 1257 37 129 0 chr11 37118741 37118904 -84724952 - B2_Mm1a SINE B2 -9 184 1 1 868 625 71 0 0 chr11 37119089 37119188 -84724668 + L1_Mus3 LINE L1 6540 6638 0 1 868 776 315 168 13 chr11 37121366 37121769 -84722087 - MER44B DNA MER2_type -85 465 1 1 868 306 215 0 58 chr11 37122411 37122480 -84721376 - ID2 SINE ID -14 69 5 1 868 580 260 134 43 chr11 37123203 37123499 -84720357 + MER102b DNA MER1_type 2 319 -22 1 868 427 319 99 31 chr11 37124216 37124407 -84719449 - MER20 DNA MER1_type -15 204 1 1 868 21 36 0 0 chr11 37125540 37125568 -84718288 + AT_rich Low_complexity Low_complexity 1 28 0 1 868 2589 179 136 5 chr11 37125571 37126161 -84717695 + RMER6C LTR ERVK 1 667 -23 1 868 454 269 19 19 chr11 37126381 37126487 -84717369 - B1_Mus1 SINE Alu -41 107 2 1 868 617 0 14 0 chr11 37126515 37126588 -84717268 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 868 1066 264 18 11 chr11 37126664 37126947 -84716909 - Lx5 LINE L1 -8 7042 6758 1 868 226 315 34 0 chr11 37127131 37127220 -84716636 + MER33 DNA MER1_type 219 310 -14 1 868 7918 105 11 3 chr11 37127512 37129050 -84714806 + L1_Mus4 LINE L1 5082 6636 0 1 868 666 273 64 14 chr11 37129087 37129306 -84714550 + RLTR12B LTR ERVK 12 241 -287 1 868 229 318 110 29 chr11 37130446 37130582 -84713274 - B1_Mm SINE Alu 0 147 1 1 868 216 0 0 0 chr11 37130593 37130617 -84713239 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 868 1088 88 0 0 chr11 37130706 37130843 -84713013 + B1_Mm SINE Alu 1 137 -10 1 868 519 17 0 0 chr11 37130843 37130903 -84712953 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 868 546 232 36 115 chr11 37131570 37131908 -84711948 + ORR1E LTR MaLR 19 348 -31 1 868 21 57 0 0 chr11 37133020 37133055 -84710801 + AT_rich Low_complexity Low_complexity 1 35 0 1 868 633 205 253 0 chr11 37134155 37134321 -84709535 + B3 SINE B2 5 212 -4 1 868 344 294 83 25 chr11 37134358 37134515 -84709341 + MLT1B LTR MaLR 3 168 -222 1 868 226 308 88 25 chr11 37134541 37134621 -84709235 + MLT1B LTR MaLR 223 307 -83 1 868 213 39 0 0 chr11 37134626 37134652 -84709204 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 868 218 340 55 28 chr11 37134749 37134858 -84708998 - MIRb SINE MIR -117 151 40 1 868 486 0 0 0 chr11 37134904 37134958 -84708898 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 868 31 0 0 0 chr11 37134963 37134994 -84708862 + AT_rich Low_complexity Low_complexity 1 31 0 1 868 990 103 0 40 chr11 37135004 37135150 -84708706 + B1_Mus1 SINE Alu 1 140 -8 1 868 209 57 0 28 chr11 37135150 37135186 -84708670 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 1 868 43 20 0 0 chr11 37135483 37135533 -84708323 + AT_rich Low_complexity Low_complexity 1 50 0 1 868 699 301 0 19 chr11 37135539 37135695 -84708161 + B3 SINE B2 5 157 -59 1 868 567 43 0 0 chr11 37135695 37135765 -84708091 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 868 408 300 123 35 chr11 37135859 37136124 -84707732 - B4A SINE B4 0 292 4 1 868 339 349 31 8 chr11 37137098 37137225 -84706631 + MIRb SINE MIR 18 147 -121 1 868 257 378 101 50 chr11 37137727 37138273 -84705583 + L2c LINE L2 2273 2846 -573 1 868 1326 280 65 0 chr11 37138356 37138738 -84705118 + MTD LTR MaLR 1 407 -12 1 868 348 336 80 60 chr11 37138768 37139170 -84704686 + L2c LINE L2 2974 3383 -4 1 868 199 328 113 16 chr11 37139148 37139272 -84704584 - L2a LINE L2 -12 3414 3279 1 868 294 327 52 23 chr11 37139335 37139507 -84704349 + MIRb SINE MIR 92 268 0 1 868 459 0 0 0 chr11 37139767 37139818 -84704038 + (TATAA)n Simple_repeat Simple_repeat 5 55 0 1 868 352 293 211 12 chr11 37140130 37140296 -84703560 - MTD LTR MaLR -220 199 1 1 868 22 0 0 0 chr11 37140587 37140609 -84703247 + AT_rich Low_complexity Low_complexity 1 22 0 1 868 683 218 16 0 chr11 37141190 37141314 -84702542 + RSINE1 SINE B4 7 132 -33 1 868 402 344 54 11 chr11 37142122 37142307 -84701549 + MIRb SINE MIR 37 229 -39 1 868 1209 313 62 29 chr11 37144121 37144717 -84699139 + Lx8 LINE L1 6841 7456 -17 1 868 272 211 14 0 chr11 37144725 37144796 -84699060 + GA-rich Low_complexity Low_complexity 2 73 0 1 868 502 99 25 0 chr11 37146849 37146930 -84696926 - L1_Mus2 LINE L1 -1 6565 6483 1 868 300 174 21 11 chr11 37147157 37147250 -84696606 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1 868 285 233 75 85 chr11 37147692 37147880 -84695976 - L1M3 LINE L1 -849 5442 5257 1 868 25 0 0 0 chr11 37147887 37147912 -84695944 + AT_rich Low_complexity Low_complexity 1 25 0 1 868 6991 96 4 32 chr11 37147912 37149023 -84694833 - L1_Mus4 LINE L1 0 6636 5653 1 868 522 0 0 0 chr11 37149023 37149081 -84694775 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 868 2408 173 1 190 chr11 37149081 37149420 -84694436 - L1_Mus4 LINE L1 -225 5652 5315 1 868 2563 157 6 21 chr11 37149421 37149530 -84694326 + L1_Mm LINE L1 4839 4944 -939 1 868 1433 62 19 0 chr11 37149530 37149740 -84694116 - L1_Mus2 LINE L1 0 6566 6353 1 868 2563 157 6 21 chr11 37149740 37150106 -84693750 + L1_Mm LINE L1 4945 5307 -576 1 868 313 235 25 0 chr11 37150200 37150281 -84693575 - L1M3 LINE L1 -1009 5134 5052 1 868 377 303 71 24 chr11 37150460 37150747 -84693109 - L1M3 LINE L1 -1070 5076 4765 1 868 571 268 14 14 chr11 37150789 37150933 -84692923 - B3 SINE B2 0 216 73 1 868 405 310 80 8 chr11 37151166 37151431 -84692425 + L1M3 LINE L1 4386 4672 -1471 1 868 247 63 30 45 chr11 37151752 37151818 -84692038 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 1 868 1022 129 0 0 chr11 37151821 37151968 -84691888 - B1_Mus2 SINE Alu 0 147 1 1 868 220 337 97 11 chr11 37152577 37152670 -84691186 + MIRb SINE MIR 129 229 -39 1 868 1731 66 16 4 chr11 37152706 37152950 -84690906 - L1_Mus3 LINE L1 -6 6632 6386 1 868 377 368 21 0 chr11 37153140 37153284 -84690572 - ID_B1 SINE B4 0 224 78 2 868 22 35 0 0 chr11 37153464 37153493 -84690363 + AT_rich Low_complexity Low_complexity 1 29 0 2 868 463 286 11 27 chr11 37154778 37154961 -84688895 + L1M2 LINE L1 4555 4734 -1409 2 868 288 256 0 0 chr11 37155384 37155462 -84688394 - L1_Mur3 LINE L1 -1414 4463 4386 2 868 310 97 0 61 chr11 37155472 37155538 -84688318 + T-rich Low_complexity Low_complexity 3 64 0 2 868 1271 78 0 11 chr11 37155539 37155721 -84688135 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 868 4218 221 35 20 chr11 37155736 37156494 -84687362 - L1_Mur3 LINE L1 -1529 4351 3585 2 868 1989 125 34 3 chr11 37156494 37156816 -84687040 + Lx LINE L1 6310 6641 -13 2 868 4218 221 35 20 chr11 37156816 37157185 -84686671 - L1_Mur3 LINE L1 -2296 3584 3208 2 868 2479 61 61 0 chr11 37157605 37157931 -84685925 - ORR1A1 LTR MaLR 0 346 1 2 868 771 271 25 0 chr11 37158228 37158427 -84685429 + B3 SINE B2 6 209 -7 2 868 1051 102 0 18 chr11 37159051 37159221 -84684635 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 2 868 1703 44 0 0 chr11 37161369 37161573 -84682283 + L1Md_F2 LINE L1 5384 5587 -296 2 868 8013 45 2 1 chr11 37161574 37162552 -84681304 + L1Md_F2 LINE L1 5589 6567 -15 2 868 246 128 0 0 chr11 37162760 37162799 -84681057 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 2 868 856 246 5 39 chr11 37163070 37163273 -84680583 + B3A SINE B2 2 197 -1 2 868 26 0 0 0 chr11 37163282 37163308 -84680548 + AT_rich Low_complexity Low_complexity 1 26 0 2 868 214 225 28 0 chr11 37163502 37163573 -84680283 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 868 2801 312 58 41 chr11 37163636 37164849 -84679007 + Lx9 LINE L1 6359 7592 -52 2 868 25 75 0 0 chr11 37164909 37164962 -84678894 + AT_rich Low_complexity Low_complexity 1 53 0 2 868 21 36 0 0 chr11 37166403 37166431 -84677425 + AT_rich Low_complexity Low_complexity 1 28 0 2 868 303 336 142 59 chr11 37167250 37167503 -84676353 - Tigger10 DNA Tigger -41 1802 1529 2 868 387 318 60 33 chr11 37168195 37168377 -84675479 - Tigger10 DNA Tigger -1148 695 509 2 868 450 0 0 0 chr11 37169133 37169183 -84674673 + (CAG)n Simple_repeat Simple_repeat 3 52 0 2 868 423 0 0 0 chr11 37169669 37169716 -84674140 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 868 263 334 43 47 chr11 37170615 37170767 -84673089 + MIR SINE MIR 100 257 -11 2 868 242 317 56 37 chr11 37171723 37171831 -84672025 - MIRc SINE MIR -105 163 54 2 868 23 0 0 0 chr11 37172418 37172441 -84671415 + AT_rich Low_complexity Low_complexity 1 23 0 2 868 731 321 68 46 chr11 37174771 37175097 -84668759 + MER58B DNA MER1_type 6 338 -3 2 868 2876 58 29 27 chr11 37175706 37176116 -84667740 - RLTR10A LTR ERVK 0 411 1 2 868 22 0 0 0 chr11 37176575 37176597 -84667259 + AT_rich Low_complexity Low_complexity 1 22 0 2 868 440 73 29 0 chr11 37176719 37176787 -84667069 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 2 868 21 36 0 0 chr11 37177373 37177401 -84666455 + AT_rich Low_complexity Low_complexity 1 28 0 2 868 247 297 110 59 chr11 37177484 37177620 -84666236 + RSINE1 SINE B4 2 144 -21 2 868 346 127 14 14 chr11 37177688 37177760 -84666096 + A-rich Low_complexity Low_complexity 4 75 0 2 868 450 346 74 21 chr11 37177843 37178085 -84665771 + L3 LINE CR1 3168 3422 -1067 2 868 257 288 106 41 chr11 37178091 37178214 -84665642 - MLT1K LTR MaLR 0 595 465 2 868 225 94 0 0 chr11 37178666 37178698 -84665158 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 868 1338 86 7 147 chr11 37178699 37178984 -84664872 + Lx3_Mus LINE L1 5939 6183 -826 2 868 205 310 126 66 chr11 37179211 37179394 -84664462 + L3 LINE CR1 3730 3923 -566 2 868 253 138 45 0 chr11 37179402 37179457 -84664399 + L1MA5 LINE L1 5856 5936 -364 2 868 1123 59 0 0 chr11 37179677 37179813 -84664043 - B1_Mus2 SINE Alu -9 138 3 2 868 2769 79 15 46 chr11 37180040 37180451 -84663405 + L1_Mus2 LINE L1 6169 6566 0 2 868 948 239 19 0 chr11 37181155 37181364 -84662492 + B3 SINE B2 2 214 -2 2 868 407 100 0 14 chr11 37183115 37183186 -84660670 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 868 252 0 0 0 chr11 37183473 37183501 -84660355 + (T)n Simple_repeat Simple_repeat 1 28 0 2 868 237 178 0 0 chr11 37184445 37184490 -84659366 + GA-rich Low_complexity Low_complexity 1 45 0 2 868 1280 263 18 108 chr11 37185177 37185633 -84658223 + MTD LTR MaLR 5 419 0 2 868 301 261 89 32 chr11 37185636 37185744 -84658112 - L1M5 LINE L1 -2946 3200 3083 2 868 1176 61 0 0 chr11 37185744 37185891 -84657965 - B1_Mus1 SINE Alu 0 148 2 2 868 301 261 89 32 chr11 37185891 37185905 -84657951 - L1M5 LINE L1 -3064 3082 3071 2 868 219 317 36 24 chr11 37186058 37186142 -84657714 + B1_Mm SINE Alu 8 92 -55 2 868 1056 101 0 26 chr11 37186207 37186359 -84657497 - B1_Mus1 SINE Alu 0 148 1 2 868 522 309 155 38 chr11 37187122 37187541 -84656315 - MLT1D LTR MaLR -14 491 24 2 868 180 295 113 87 chr11 37187705 37187820 -84656036 + L2a LINE L2 3304 3421 -5 2 868 227 93 0 23 chr11 37188939 37188983 -84654873 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 2 868 456 220 76 28 chr11 37189911 37190056 -84653800 - MER103 DNA DNA -6 160 9 2 868 274 325 207 0 chr11 37190137 37190306 -84653550 + MIRb SINE MIR 38 241 -27 2 868 26 0 0 0 chr11 37190341 37190367 -84653489 + AT_rich Low_complexity Low_complexity 1 26 0 2 868 366 80 0 0 chr11 37190567 37190617 -84653239 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 868 1625 125 75 53 chr11 37191206 37191527 -84652329 + Lx LINE L1 6313 6640 -14 2 868 203 308 88 34 chr11 37191932 37192080 -84651776 + MIR SINE MIR 30 185 -77 2 868 195 333 51 13 chr11 37193038 37193117 -84650739 - MIR3 SINE MIR -32 176 95 2 868 225 0 0 0 chr11 37193193 37193218 -84650638 + (A)n Simple_repeat Simple_repeat 1 25 0 2 868 337 308 75 75 chr11 37193451 37193637 -84650219 + MER58B DNA MER1_type 34 219 -122 2 868 1994 74 10 10 chr11 37193707 37193995 -84649861 + L1_Mus3 LINE L1 6351 6638 0 2 868 703 264 100 21 chr11 37194112 37194352 -84649504 + Lx8 LINE L1 6947 7205 -268 2 868 248 344 11 0 chr11 37194352 37194445 -84649411 + RMER15 LTR ERVL 374 467 -108 2 868 222 200 0 35 chr11 37194571 37194628 -84649228 + A-rich Low_complexity Low_complexity 3 57 0 2 868 1484 259 10 41 chr11 37194633 37194879 -84648977 + Lx6 LINE L1 7082 7319 -141 2 868 201 39 0 0 chr11 37194879 37194905 -84648951 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 868 1484 259 10 41 chr11 37194905 37195045 -84648811 + Lx6 LINE L1 7320 7456 -4 2 868 852 250 87 58 chr11 37195280 37195692 -84648164 + Charlie1b DNA MER1_type 49 472 -51 2 868 2060 275 94 28 chr11 37195706 37197442 -84646414 - RMER1A Other Other -10 1056 10 2 868 4378 6 0 8 chr11 37197743 37198237 -84645619 - L1Md_T LINE L1 0 6582 6093 2 868 377 337 58 16 chr11 37198539 37198860 -84644996 + MLT1B LTR MaLR 4 368 -22 2 868 271 80 19 39 chr11 37199018 37199070 -84644786 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 868 22 56 0 0 chr11 37199108 37199144 -84644712 + AT_rich Low_complexity Low_complexity 1 36 0 2 868 215 103 0 25 chr11 37199899 37199939 -84643917 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 868 25 31 0 0 chr11 37201187 37201219 -84642637 + AT_rich Low_complexity Low_complexity 1 32 0 2 868 1296 59 6 0 chr11 37201279 37201449 -84642407 + L1_Mus1 LINE L1 6395 6565 -2 2 868 671 256 18 87 chr11 37202170 37202388 -84641468 - B3 SINE B2 -13 203 1 2 868 1696 216 12 2 chr11 37202808 37203209 -84640647 + Lx2B LINE L1 771 1240 -5744 2 868 24997 141 14 19 chr11 37203201 37208134 -84635722 + Lx2B LINE L1 1505 6387 -613 2 868 315 0 0 0 chr11 37208134 37208169 -84635687 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 868 8292 128 28 42 chr11 37208169 37208754 -84635102 + Lx2B LINE L1 6388 6982 -18 2 868 1049 96 0 0 chr11 37208754 37208889 -84634967 + B1_Mus1 SINE Alu 1 135 -13 2 868 207 0 0 0 chr11 37208892 37208915 -84634941 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 868 519 340 55 20 chr11 37209407 37209608 -84634248 - MER58A DNA MER1_type -15 209 2 2 868 546 29 0 0 chr11 37211131 37211199 -84632657 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 868 21 0 0 0 chr11 37211505 37211526 -84632330 + AT_rich Low_complexity Low_complexity 1 21 0 2 868 245 51 26 0 chr11 37211723 37211762 -84632094 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 868 439 349 64 18 chr11 37212978 37213197 -84630659 - B4 SINE B4 -62 230 2 2 868 798 302 18 82 chr11 37213264 37213665 -84630191 - MTEa LTR MaLR 0 379 5 2 868 314 270 15 38 chr11 37213812 37213943 -84629913 + CT-rich Low_complexity Low_complexity 6 133 0 2 868 224 385 18 35 chr11 37215799 37215912 -84627944 - MIR3 SINE MIR -40 168 58 2 868 739 260 0 78 chr11 37216113 37216330 -84627526 - B3 SINE B2 0 216 17 2 868 282 29 0 0 chr11 37216932 37216967 -84626889 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 868 502 301 95 92 chr11 37217250 37217619 -84626237 + MTEa LTR MaLR 1 370 -9 2 868 433 315 18 9 chr11 37217688 37217797 -84626059 + B3A SINE B2 41 150 -48 2 868 531 0 0 0 chr11 37217806 37217865 -84625991 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 868 333 0 0 0 chr11 37217868 37217905 -84625951 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 868 25 0 0 0 chr11 37218599 37218624 -84625232 + AT_rich Low_complexity Low_complexity 1 25 0 2 868 608 254 7 7 chr11 37219033 37219172 -84624684 - B1F SINE Alu -10 139 1 2 868 231 277 122 106 chr11 37219778 37220024 -84623832 - L2a LINE L2 0 3426 3138 2 868 234 0 0 0 chr11 37220616 37220642 -84623214 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 868 305 304 123 6 chr11 37220778 37220940 -84622916 + L1M5 LINE L1 5646 5826 -298 2 868 460 352 33 33 chr11 37221731 37221881 -84621975 + B3A SINE B2 1 150 -48 2 868 198 156 0 0 chr11 37221896 37221941 -84621915 + CT-rich Low_complexity Low_complexity 1 45 0 2 868 349 328 120 100 chr11 37222510 37222634 -84621222 + MLT1B LTR MaLR 25 131 -259 3 868 956 207 136 89 chr11 37222634 37222994 -84620862 - MTE2a LTR MaLR -2 377 1 3 868 349 328 120 100 chr11 37222994 37223228 -84620628 + MLT1B LTR MaLR 132 390 0 3 868 979 92 50 0 chr11 37223271 37223412 -84620444 + B1_Mus1 SINE Alu 1 148 0 3 868 334 262 53 13 chr11 37224007 37224158 -84619698 + L1M5 LINE L1 5057 5213 -933 3 108 674 279 21 52 chr11 37224438 37224574 -84619282 + B4 SINE B4 88 220 -72 3 869 189 0 0 0 chr11 37224574 37224595 -84619261 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 3 869 674 279 21 52 chr11 37224595 37224651 -84619205 + B4 SINE B4 221 274 -18 3 869 1677 168 73 0 chr11 37224657 37224972 -84618884 + ORR1A1 LTR MaLR 1 338 -8 3 869 972 91 28 11 chr11 37225336 37225513 -84618343 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 869 233 213 21 0 chr11 37225518 37225565 -84618291 + CT-rich Low_complexity Low_complexity 5 52 0 3 869 21 0 0 0 chr11 37226034 37226055 -84617801 + AT_rich Low_complexity Low_complexity 1 21 0 3 869 311 288 0 36 chr11 37227160 37227173 -84616683 + MTD LTR MaLR 9 19 -388 3 869 228 35 0 0 chr11 37227173 37227202 -84616654 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 869 430 258 0 0 chr11 37227202 37227295 -84616561 + MTD LTR MaLR 18 110 -309 3 869 313 208 39 0 chr11 37227295 37227372 -84616484 + MTD LTR MaLR 340 419 0 3 869 22 0 0 0 chr11 37228285 37228307 -84615549 + AT_rich Low_complexity Low_complexity 1 22 0 3 869 685 222 44 12 chr11 37228497 37228657 -84615199 + MTD LTR MaLR 195 359 -60 3 869 426 330 29 39 chr11 37231237 37231442 -84612414 + ID_B1 SINE B4 16 218 -6 3 869 823 46 0 0 chr11 37231339 37231447 -84612409 + B1_Mus1 SINE Alu 40 147 -1 3 869 539 232 86 127 chr11 37232760 37232957 -84610899 - B3A SINE B2 -1 194 6 3 869 468 0 0 0 chr11 37233139 37233191 -84610665 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 869 853 176 6 6 chr11 37233193 37233370 -84610486 + GA-rich Low_complexity Low_complexity 1 177 0 3 869 348 335 82 38 chr11 37234419 37234602 -84609254 + MLT1F1 LTR MaLR 33 223 -326 3 869 1394 321 139 51 chr11 37235660 37236508 -84607348 + MLT1F1-int LTR MaLR 331 1221 -268 3 869 549 99 0 0 chr11 37236508 37236589 -84607267 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 869 1394 321 139 51 chr11 37236589 37236802 -84607054 + MLT1F1-int LTR MaLR 1222 1485 -4 3 869 387 311 25 164 chr11 37236805 37237086 -84606770 + MLT1F1 LTR MaLR 4 245 -324 3 869 981 249 142 15 chr11 37237243 37237573 -84606283 - ORR1D1 LTR MaLR -2 372 1 3 869 202 224 0 0 chr11 37238952 37239001 -84604855 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 3 869 251 374 37 37 chr11 37239762 37239926 -84603930 - Charlie15a DNA MER1_type 0 224 61 3 869 286 316 54 85 chr11 37239944 37240108 -84603748 + MIR3 SINE MIR 42 211 -65 3 869 552 30 0 0 chr11 37242070 37242136 -84601720 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 869 2589 172 54 16 chr11 37242188 37242703 -84601153 - Lx3C LINE L1 -10 6966 6432 3 869 492 360 61 28 chr11 37243155 37243481 -84600375 + LTR40a LTR ERVL 70 406 -113 3 869 218 314 100 0 chr11 37244213 37244283 -84599573 - ID4 SINE ID -5 78 2 3 869 375 284 51 8 chr11 37244292 37244409 -84599447 - B1F SINE Alu -1 148 27 3 869 519 66 0 0 chr11 37244721 37244797 -84599059 + (TTTTG)n Simple_repeat Simple_repeat 1 76 0 3 869 1056 93 0 0 chr11 37244798 37244937 -84598919 - B1_Mus1 SINE Alu -7 141 3 3 869 1638 198 47 3 chr11 37245102 37245441 -84598415 + RLTR15 LTR ERVK 1 354 -5 3 869 793 162 110 0 chr11 37245609 37245763 -84598093 + URR1A DNA MER1_type 56 226 0 3 869 211 291 0 0 chr11 37246465 37246541 -84597315 - MIRc SINE MIR -49 213 148 3 869 409 322 129 50 chr11 37246639 37246917 -84596939 - ORR1E LTR MaLR -58 301 2 3 869 535 335 91 25 chr11 37247584 37247783 -84596073 + B3 SINE B2 1 212 -4 3 869 398 140 40 0 chr11 37249737 37249837 -84594019 + CT-rich Low_complexity Low_complexity 3 106 0 3 869 314 98 20 0 chr11 37250106 37250157 -84593699 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 869 268 211 147 0 chr11 37250233 37250328 -84593528 - Charlie7 DNA MER1_type -142 2470 2362 3 869 332 312 36 27 chr11 37250443 37250555 -84593301 + B1F SINE Alu 37 149 0 3 869 1214 310 87 121 chr11 37250837 37251577 -84592279 - Charlie7 DNA MER1_type -322 2290 1565 3 869 351 0 0 0 chr11 37251577 37251616 -84592240 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 869 1214 310 87 121 chr11 37251616 37252303 -84591553 - Charlie7 DNA MER1_type -1048 1564 935 3 869 402 21 0 0 chr11 37252303 37252350 -84591506 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 869 1214 310 87 121 chr11 37252350 37252746 -84591110 - Charlie7 DNA MER1_type -1678 934 527 3 869 2401 147 36 22 chr11 37252747 37253193 -84590663 + Lx3C LINE L1 6525 6976 0 3 869 519 138 0 0 chr11 37253193 37253280 -84590576 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 3 869 607 312 110 34 chr11 37254052 37255076 -84588780 + L1MA6 LINE L1 5156 6271 -29 3 869 561 311 152 52 chr11 37255127 37255496 -84588360 + MLT1A1 LTR MaLR 3 408 0 3 869 204 373 38 42 chr11 37256010 37256146 -84587710 + MIR SINE MIR 15 155 -113 3 869 247 348 17 9 chr11 37257117 37257233 -84586623 + L1MD2 LINE L1 61 177 -6370 3 869 4586 174 30 36 chr11 37257350 37258069 -84585787 + RLTR25A LTR ERVK 152 883 -220 3 869 441 0 0 0 chr11 37258069 37258118 -84585738 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 869 360 77 0 0 chr11 37258118 37258169 -84585687 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 869 4586 174 30 36 chr11 37258169 37258406 -84585450 + RLTR25A LTR ERVK 884 1101 -2 3 869 224 254 0 15 chr11 37258706 37258774 -84585082 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 869 324 0 0 0 chr11 37258969 37259005 -84584851 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 869 216 0 0 0 chr11 37259005 37259028 -84584828 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 869 662 0 13 0 chr11 37259028 37259105 -84584751 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 3 869 27 49 0 0 chr11 37259239 37259280 -84584576 + AT_rich Low_complexity Low_complexity 1 41 0 3 869 200 294 193 29 chr11 37261195 37261335 -84582521 + MIR SINE MIR 100 262 0 3 869 325 353 43 22 chr11 37262053 37262192 -84581664 - L2b LINE L2 -3 3372 3231 3 869 298 303 45 119 chr11 37262540 37262716 -84581140 + MIRb SINE MIR 29 191 -77 3 869 460 239 81 15 chr11 37263029 37263165 -84580691 - B1F2 SINE Alu -2 147 3 3 869 261 0 0 0 chr11 37263179 37263208 -84580648 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 869 226 300 48 35 chr11 37263408 37263553 -84580303 - L1MB2 LINE L1 -9 6174 6028 3 869 520 224 203 34 chr11 37263564 37263800 -84580056 - L1MB2 LINE L1 -194 5977 5702 3 869 225 0 0 0 chr11 37264379 37264404 -84579452 + (A)n Simple_repeat Simple_repeat 1 25 0 3 869 545 316 22 33 chr11 37264554 37264737 -84579119 - MLT1K LTR MaLR -414 181 1 3 869 303 207 119 40 chr11 37267155 37267281 -84576575 - Lx9 LINE L1 -1 7643 7508 3 869 568 296 86 13 chr11 37267487 37267720 -84576136 + MER58B DNA MER1_type 26 275 -66 3 869 1027 239 158 37 chr11 37268497 37268871 -84574985 + MTD LTR MaLR 1 419 0 3 869 1594 262 222 54 chr11 37268872 37269945 -84573911 + MTD-int LTR MaLR 2 1254 -4 3 869 1148 243 123 54 chr11 37269949 37270340 -84573516 + MTD LTR MaLR 1 418 -1 3 869 572 156 9 0 chr11 37271778 37271887 -84571969 + CT-rich Low_complexity Low_complexity 1 110 0 3 869 440 336 133 19 chr11 37271960 37272230 -84571626 - RMER15 LTR ERVL 0 575 275 3 869 314 91 0 18 chr11 37272648 37272704 -84571152 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 3 869 803 309 40 8 chr11 37272920 37272933 -84570923 - B4 SINE B4 -2 290 279 3 869 351 0 0 0 chr11 37272933 37272972 -84570884 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 869 803 309 40 8 chr11 37272972 37273206 -84570650 - B4 SINE B4 -14 278 35 3 869 263 244 17 54 chr11 37273265 37273439 -84570417 - L1M5 LINE L1 -791 5355 5188 3 869 368 304 86 25 chr11 37274796 37274958 -84568898 + MER5A DNA MER1_type 5 176 -13 3 869 24 0 0 0 chr11 37275442 37275466 -84568390 + AT_rich Low_complexity Low_complexity 1 24 0 3 869 184 273 18 0 chr11 37277304 37277359 -84566497 - MIRb SINE MIR -38 230 175 3 869 636 334 79 26 chr11 37278335 37278676 -84565180 + MLT2F LTR ERVL 255 613 -50 3 869 933 179 149 0 chr11 37279077 37279272 -84564584 + URR1A DNA MER1_type 2 225 -1 3 869 243 0 0 0 chr11 37279511 37279538 -84564318 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 869 1113 52 0 0 chr11 37279538 37279674 -84564182 - B1_Mus1 SINE Alu -11 137 2 3 869 198 306 56 0 chr11 37280277 37280349 -84563507 + L2 LINE L2 2998 3073 -346 3 869 583 251 175 0 chr11 37280559 37280742 -84563114 + B3 SINE B2 1 215 -1 3 869 258 32 0 0 chr11 37281914 37281945 -84561911 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 869 441 308 34 0 chr11 37281969 37282086 -84561770 + B3A SINE B2 31 151 -47 3 869 399 21 0 0 chr11 37282088 37282136 -84561720 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 869 207 0 0 0 chr11 37283198 37283221 -84560635 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 869 373 381 44 15 chr11 37283224 37283360 -84560496 - RSINE1 SINE B4 -24 141 2 3 869 311 329 84 54 chr11 37285012 37285179 -84558677 - MER20 DNA MER1_type -42 177 6 3 869 538 316 31 10 chr11 37285514 37285706 -84558150 + MER117 DNA MER1_type 1 196 -1 3 869 270 56 0 0 chr11 37285920 37285956 -84557900 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 3 869 242 87 0 21 chr11 37286693 37286740 -84557116 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 869 369 0 0 0 chr11 37287293 37287334 -84556522 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 869 936 235 90 23 chr11 37289279 37289561 -84554295 - RLTR11A LTR ERVK -285 292 10 3 869 385 292 19 9 chr11 37289611 37289707 -84554149 - B3A SINE B2 -83 115 19 3 869 288 0 0 0 chr11 37289707 37289739 -84554117 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 3 869 2648 176 6 6 chr11 37291259 37291739 -84552117 - Lx LINE L1 -3 6651 6172 3 869 471 379 50 11 chr11 37293019 37293302 -84550554 + L1MC4a LINE L1 5612 5905 -1977 3 869 1390 170 0 0 chr11 37294644 37294868 -84548988 - MTC LTR MaLR -1 420 197 3 869 684 158 35 0 chr11 37294871 37295042 -84548814 + CT-rich Low_complexity Low_complexity 2 178 0 3 869 396 319 0 0 chr11 37295042 37295161 -84548695 + T-rich Low_complexity Low_complexity 5 123 0 4 869 544 261 0 23 chr11 37295161 37295294 -84548562 - B1_Mur3 SINE Alu 0 149 20 4 869 2682 49 7 161 chr11 37295294 37295755 -84548101 + RLTR10 LTR ERVK 1 390 0 4 869 277 111 0 85 chr11 37295757 37295816 -84548040 + RLTR10-int LTR ERVK 3 56 -1931 4 869 7840 42 1 3 chr11 37295830 37296820 -84547036 + RLTR10-int LTR ERVK 11 998 -989 4 869 326 232 62 39 chr11 37296884 37297014 -84546842 + RLTR10-int LTR ERVK 1462 1594 -5987 4 869 8336 20 0 2 chr11 37297096 37298095 -84545761 + RLTR10-int LTR ERVK 990 1986 -1 4 869 2597 49 6 190 chr11 37298095 37298573 -84545283 + RLTR10 LTR ERVK 1 390 0 4 869 1131 152 84 0 chr11 37298580 37298771 -84545085 - MTC LTR MaLR -214 207 1 3 869 1478 233 33 23 chr11 37299139 37299534 -84544322 + RLTR20B3 LTR ERVK 144 542 -35 4 869 967 232 16 0 chr11 37299871 37300061 -84543795 + URR1B DNA MER1_type 1 193 -32 4 869 1235 277 87 20 chr11 37300061 37300463 -84543393 + Lx8 LINE L1 6862 7290 -183 4 869 944 92 90 13 chr11 37300489 37300644 -84543212 - B2_Mm2 SINE B2 -27 168 2 4 869 24 0 0 51 chr11 37300760 37300783 -84543073 + AT_rich Low_complexity Low_complexity 1 22 0 4 869 362 137 14 0 chr11 37300783 37300856 -84543000 - L1_Mus2 LINE L1 0 6566 6493 4 869 24 0 0 51 chr11 37300856 37300871 -84542985 + AT_rich Low_complexity Low_complexity 1 15 0 4 869 450 0 0 0 chr11 37301369 37301419 -84542437 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 869 385 279 0 0 chr11 37301452 37301610 -84542246 + A-rich Low_complexity Low_complexity 1 158 0 4 869 495 227 29 29 chr11 37301632 37301768 -84542088 - Lx7 LINE L1 -443 7253 7118 4 869 1007 269 4 18 chr11 37301790 37302066 -84541790 + Lx7 LINE L1 6806 7077 -619 4 869 257 355 24 24 chr11 37302348 37302475 -84541381 + L2a LINE L2 3300 3426 0 4 869 380 150 12 0 chr11 37303520 37303600 -84540256 + (TAA)n Simple_repeat Simple_repeat 3 83 0 4 869 246 269 73 18 chr11 37304319 37304429 -84539427 + MLT1A1 LTR MaLR 291 406 -2 4 869 5981 172 13 63 chr11 37304440 37304658 -84539198 + Lx2B LINE L1 5792 6012 -988 4 869 1087 97 0 0 chr11 37304658 37304803 -84539053 + B1_Mm SINE Alu 1 145 -2 4 869 447 35 0 0 chr11 37304803 37304860 -84538996 + (CAAAC)n Simple_repeat Simple_repeat 2 58 0 4 869 5981 172 13 63 chr11 37304860 37305913 -84537943 + Lx2B LINE L1 6013 6999 -1 4 869 581 336 97 55 chr11 37306215 37306545 -84537311 - MLT1A1 LTR MaLR -8 400 57 4 869 235 369 59 15 chr11 37306865 37307000 -84536856 - L2b LINE L2 -2 3373 3233 4 869 1677 190 85 20 chr11 37307296 37307650 -84536206 - MTC LTR MaLR -8 413 37 4 869 3043 89 11 0 chr11 37307650 37308135 -84535721 - L1_Mus3 LINE L1 -606 6032 5543 4 869 4456 85 5 2 chr11 37308135 37308733 -84535123 + L1_Mus3 LINE L1 6038 6637 -1 4 869 931 333 65 18 chr11 37309283 37309668 -84534188 - MTD LTR MaLR 0 419 17 4 869 418 228 26 143 chr11 37310642 37311020 -84532836 + RMER17C LTR ERVK 77 410 0 4 869 405 0 0 0 chr11 37312345 37312390 -84531466 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 869 225 0 0 0 chr11 37312390 37312414 -84531442 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 869 243 0 0 0 chr11 37312880 37312907 -84530949 + (A)n Simple_repeat Simple_repeat 1 27 0 4 869 284 292 102 20 chr11 37313304 37313402 -84530454 + MER103 DNA DNA 20 125 -41 4 869 1726 265 115 27 chr11 37313869 37314459 -84529397 - Lx6 LINE L1 -4 7456 6815 4 869 204 336 62 35 chr11 37315682 37315827 -84528029 - MIRb SINE MIR -8 260 112 4 869 505 295 44 120 chr11 37315921 37316237 -84527619 - B4A SINE B4 0 292 1 4 869 7593 47 5 2 chr11 37316263 37317199 -84526657 + L1Md_F2 LINE L1 5639 6577 -5 4 869 236 279 32 16 chr11 37317203 37317265 -84526591 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 4 869 904 251 130 0 chr11 37319414 37319661 -84524195 + MER58B DNA MER1_type 62 340 -1 4 869 341 360 52 0 chr11 37319672 37319825 -84524031 + MER5A1 DNA MER1_type 6 166 0 4 869 238 279 44 0 chr11 37320169 37320237 -84523619 + L2a LINE L2 2980 3050 -376 4 869 328 316 86 66 chr11 37320416 37320437 -84523419 + CYRA11_Mm Unknown Y-chromosome 144 268 -349 4 869 1178 156 69 28 chr11 37320437 37320534 -84523322 - URR1A DNA MER1_type 0 226 123 4 869 3183 50 7 2 chr11 37320534 37320938 -84522918 - L1Md_F2 LINE L1 -2 6580 6175 4 869 1178 156 69 28 chr11 37320938 37321057 -84522799 - URR1A DNA MER1_type -104 122 1 4 869 22 35 0 0 chr11 37323044 37323073 -84520783 + AT_rich Low_complexity Low_complexity 1 29 0 4 869 778 225 78 20 chr11 37324198 37324402 -84519454 + B3 SINE B2 1 216 0 4 869 26 0 0 0 chr11 37324449 37324475 -84519381 + AT_rich Low_complexity Low_complexity 1 26 0 4 869 249 119 0 0 chr11 37325694 37325736 -84518120 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 869 710 142 30 0 chr11 37325753 37325922 -84517934 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 4 869 7922 46 1 2 chr11 37327563 37329088 -84514768 - L1Md_F2 LINE L1 0 6582 5060 4 869 5711 66 0 88 chr11 37329085 37330018 -84513838 + L1Md_F2 LINE L1 4157 5007 -876 4 869 275 146 0 18 chr11 37330258 37330314 -84513542 + (ATG)n Simple_repeat Simple_repeat 1 55 0 4 869 21 36 0 0 chr11 37333659 37333687 -84510169 + AT_rich Low_complexity Low_complexity 1 28 0 4 869 666 0 0 0 chr11 37334042 37334116 -84509740 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 869 375 329 39 32 chr11 37334973 37335127 -84508729 - RSINE1 SINE B4 0 165 11 4 869 239 185 62 0 chr11 37336462 37336527 -84507329 + A-rich Low_complexity Low_complexity 3 71 0 4 869 182 284 14 56 chr11 37336532 37336603 -84507253 - MIRb SINE MIR -196 72 5 4 869 2233 217 25 43 chr11 37337291 37337806 -84506050 - RMER20A LTR ERVK 0 516 11 4 869 619 319 22 16 chr11 37338054 37338239 -84505617 + B3A SINE B2 5 190 -8 4 869 331 308 117 14 chr11 37338310 37338455 -84505401 - MIR SINE MIR -82 180 21 4 869 12410 56 3 0 chr11 37338584 37340400 -84503456 + L1Md_F2 LINE L1 4280 6101 -481 4 869 4579 65 23 13 chr11 37340399 37341005 -84502851 + L1_Mus1 LINE L1 5943 6554 -13 4 869 351 0 0 0 chr11 37341005 37341044 -84502812 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 869 310 238 0 0 chr11 37343220 37343283 -84500573 + ID4_ SINE ID 3 65 -18 4 869 23 33 0 0 chr11 37344252 37344282 -84499574 + AT_rich Low_complexity Low_complexity 1 30 0 4 869 198 0 0 0 chr11 37346062 37346084 -84497772 + (T)n Simple_repeat Simple_repeat 1 22 0 4 869 423 0 0 0 chr11 37347083 37347130 -84496726 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 869 29 28 0 0 chr11 37347540 37347576 -84496280 + AT_rich Low_complexity Low_complexity 1 36 0 4 869 880 330 87 79 chr11 37348147 37348654 -84495202 + MLT1F LTR MaLR 11 521 -27 4 869 214 310 123 27 chr11 37349669 37349815 -84494041 - L2a LINE L2 -56 3370 3211 4 869 1256 63 62 6 chr11 37349882 37350058 -84493798 + B2_Mm2 SINE B2 2 187 -8 4 869 200 229 14 14 chr11 37350127 37350198 -84493658 + A-rich Low_complexity Low_complexity 5 75 0 4 869 289 346 86 24 chr11 37350207 37350417 -84493439 - L2a LINE L2 -369 3050 2828 4 869 28 29 0 0 chr11 37351682 37351717 -84492139 + AT_rich Low_complexity Low_complexity 1 35 0 4 869 363 347 18 6 chr11 37352656 37352827 -84491029 + L1M2 LINE L1 4754 4926 -1217 4 869 202 216 0 0 chr11 37353222 37353273 -84490583 + A-rich Low_complexity Low_complexity 1 51 0 4 869 2038 155 37 68 chr11 37353685 37354113 -84489743 - RMER4A LTR ERVK -50 416 2 4 869 21 82 0 0 chr11 37354124 37354173 -84489683 + AT_rich Low_complexity Low_complexity 1 49 0 4 869 389 311 44 20 chr11 37354625 37354956 -84488900 + L1M2 LINE L1 4751 5117 -1023 4 869 261 0 0 0 chr11 37354957 37354986 -84488870 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 869 333 351 68 20 chr11 37355022 37355316 -84488540 + L1M2 LINE L1 5373 5680 -620 4 869 227 115 127 55 chr11 37355358 37355413 -84488443 + L1M5 LINE L1 5736 5794 -650 4 870 27 29 0 0 chr11 37355732 37355766 -84488090 + AT_rich Low_complexity Low_complexity 1 34 0 4 870 392 285 113 62 chr11 37356096 37356354 -84487502 + L1M4c LINE L1 2022 2283 -4725 4 870 30 27 0 0 chr11 37356782 37356819 -84487037 + AT_rich Low_complexity Low_complexity 1 37 0 4 870 205 254 0 0 chr11 37356846 37356913 -84486943 + T-rich Low_complexity Low_complexity 1 67 0 4 870 6318 128 36 23 chr11 37356913 37358014 -84485842 - Lx LINE L1 0 6654 5541 4 870 207 0 0 0 chr11 37359525 37359548 -84484308 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 870 414 0 0 0 chr11 37360726 37360772 -84483084 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 870 27 29 0 0 chr11 37360900 37360934 -84482922 + AT_rich Low_complexity Low_complexity 1 34 0 4 870 1015 295 21 30 chr11 37361554 37361886 -84481970 - Lx8 LINE L1 -102 7371 7043 4 870 3150 225 115 30 chr11 37362094 37363009 -84480847 + Lx9 LINE L1 6641 7633 -11 4 870 22 0 0 0 chr11 37363012 37363034 -84480822 + AT_rich Low_complexity Low_complexity 1 22 0 4 870 380 251 256 6 chr11 37363266 37363434 -84480422 - B3 SINE B2 -6 210 1 4 870 21 36 0 0 chr11 37364302 37364330 -84479526 + AT_rich Low_complexity Low_complexity 1 28 0 4 870 510 57 0 0 chr11 37364628 37364698 -84479158 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 4 870 243 0 0 0 chr11 37365129 37365156 -84478700 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 4 870 1214 61 0 0 chr11 37365156 37365303 -84478553 - B1_Mus1 SINE Alu 0 148 2 4 870 227 229 0 16 chr11 37365405 37365467 -84478389 + (TAA)n Simple_repeat Simple_repeat 2 62 0 4 870 21 0 0 0 chr11 37367090 37367111 -84476745 + AT_rich Low_complexity Low_complexity 1 21 0 4 870 22 0 0 0 chr11 37368531 37368553 -84475303 + AT_rich Low_complexity Low_complexity 1 22 0 4 870 1274 164 4 18 chr11 37369096 37369325 -84474531 - URR1A DNA MER1_type 0 226 1 4 870 304 269 51 0 chr11 37369724 37369802 -84474054 + PB1D7 SINE Alu 30 111 -9 4 870 415 327 107 9 chr11 37372506 37372722 -84471134 + MIR SINE MIR 1 237 -25 4 870 192 77 0 0 chr11 37372952 37372978 -84470878 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 870 441 0 0 0 chr11 37373797 37373846 -84470010 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 870 369 0 0 0 chr11 37373847 37373888 -84469968 + (GAA)n Simple_repeat Simple_repeat 2 42 0 5 870 962 162 6 0 chr11 37373893 37374072 -84469784 + GA-rich Low_complexity Low_complexity 1 180 0 5 870 21 0 0 0 chr11 37375424 37375445 -84468411 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 231 125 0 0 chr11 37375829 37375869 -84467987 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 870 31 0 0 0 chr11 37376037 37376068 -84467788 + AT_rich Low_complexity Low_complexity 1 31 0 5 870 1011 116 0 0 chr11 37376082 37376220 -84467636 - B1_Mus1 SINE Alu -10 138 1 5 870 21 36 0 0 chr11 37377099 37377127 -84466729 + AT_rich Low_complexity Low_complexity 1 28 0 5 870 459 188 26 0 chr11 37377369 37377486 -84466370 + (TA)n Simple_repeat Simple_repeat 1 120 0 5 870 378 271 80 32 chr11 37378389 37378576 -84465280 + L1MEc LINE L1 400 595 -5805 5 870 225 180 0 0 chr11 37378899 37378949 -84464907 + T-rich Low_complexity Low_complexity 5 54 0 5 870 342 256 114 23 chr11 37378951 37379039 -84464817 - PB1D10 SINE Alu 0 127 31 5 870 495 0 0 0 chr11 37379200 37379255 -84464601 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 5 870 664 153 0 22 chr11 37379255 37379389 -84464467 + GA-rich Low_complexity Low_complexity 1 131 0 5 870 1297 269 128 21 chr11 37379672 37380109 -84463747 - Lx6 LINE L1 -14 7446 6963 5 870 292 351 103 32 chr11 37380199 37380355 -84463501 + B4 SINE B4 126 292 0 5 870 254 256 23 11 chr11 37380356 37380443 -84463413 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 870 465 19 0 0 chr11 37381161 37381215 -84462641 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 870 2299 206 16 9 chr11 37381402 37381853 -84462003 + Lx6 LINE L1 6223 6676 -784 5 870 183 400 0 0 chr11 37382366 37382436 -84461420 - L2b LINE L2 -308 3067 2998 5 870 16413 94 7 10 chr11 37384499 37387596 -84456260 + L1_Mus1 LINE L1 3481 6567 0 5 870 302 353 101 8 chr11 37388302 37388690 -84455166 - L1MB2 LINE L1 -28 6143 5720 5 870 282 314 96 8 chr11 37388759 37388884 -84454972 + B1F SINE Alu 9 144 -5 5 870 271 335 48 42 chr11 37389109 37389277 -84454579 - ORSL-2b DNA Tip100 -142 366 198 5 870 402 21 0 0 chr11 37391459 37391506 -84452350 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 870 3320 99 47 38 chr11 37391506 37392039 -84451817 - L1_Mus3 LINE L1 -36 6602 6065 5 870 253 0 54 0 chr11 37393642 37393679 -84450177 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 870 23 0 0 0 chr11 37393844 37393867 -84449989 + AT_rich Low_complexity Low_complexity 1 23 0 5 870 714 126 0 0 chr11 37394096 37394231 -84449625 + (CA)n Simple_repeat Simple_repeat 1 135 0 5 870 283 272 65 22 chr11 37394342 37394481 -84449375 - Lx6 LINE L1 -26 7434 7290 5 870 444 318 7 13 chr11 37394560 37394710 -84449146 - Lx5 LINE L1 -701 6349 6201 5 870 534 281 81 20 chr11 37394710 37394859 -84448997 - ID_B1 SINE B4 -65 159 2 5 870 316 259 0 0 chr11 37394864 37394949 -84448907 - L1ME2z LINE L1 -27 6417 6333 5 870 411 325 122 62 chr11 37399205 37399736 -84444120 + MLT1E1A LTR MaLR 118 680 0 5 870 395 19 0 19 chr11 37399993 37400046 -84443810 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 870 357 109 0 0 chr11 37401801 37401847 -84442009 + L1_Mus3 LINE L1 6438 6483 -155 5 870 325 88 0 0 chr11 37401847 37401904 -84441952 + L1_Mus3 LINE L1 6579 6635 -3 5 870 26 0 0 0 chr11 37402366 37402392 -84441464 + AT_rich Low_complexity Low_complexity 1 26 0 5 870 298 0 48 0 chr11 37402743 37402785 -84441071 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 870 1948 109 10 149 chr11 37403330 37403444 -84440412 + L1_Mus3 LINE L1 6277 6386 -252 5 870 1032 90 7 0 chr11 37403444 37403588 -84440268 + B1_Mus1 SINE Alu 4 148 0 5 870 1948 98 2 166 chr11 37403588 37403903 -84439953 + L1_Mus3 LINE L1 6387 6637 -1 5 870 269 68 23 0 chr11 37403918 37403962 -84439894 + (GAAAA)n Simple_repeat Simple_repeat 4 48 0 5 870 218 132 19 0 chr11 37404087 37404140 -84439716 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 870 662 302 61 78 chr11 37404152 37404886 -84438970 + L1MB3 LINE L1 4771 5481 -693 5 870 297 0 0 0 chr11 37404886 37404919 -84438937 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 870 750 290 65 109 chr11 37404919 37405583 -84438273 + L1MB3 LINE L1 5482 6133 -50 5 870 3357 30 2 2 chr11 37406205 37406601 -84437255 - MTA_Mm LTR MaLR 0 396 1 5 870 263 157 0 0 chr11 37406746 37406797 -84437059 + LTR82B Low_complexity ERVL 5 55 -775 5 870 228 250 0 45 chr11 37406992 37407059 -84436797 + Lx9 LINE L1 7301 7364 -280 5 870 1478 218 35 70 chr11 37407062 37407432 -84436424 + ORR1D1 LTR MaLR 4 360 -14 5 870 21 0 0 0 chr11 37407461 37407482 -84436374 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 21 0 0 0 chr11 37407793 37407814 -84436042 + AT_rich Low_complexity Low_complexity 1 21 0 5 870 2930 43 67 0 chr11 37407941 37408316 -84435540 - MTB LTR MaLR 0 400 1 5 870 186 0 0 81 chr11 37410610 37410647 -84433209 + (GGGAGA)n Simple_repeat Simple_repeat 5 38 0 5 870 2406 109 8 3 chr11 37411277 37411637 -84432219 - L1_Mus3 LINE L1 0 6638 6277 5 870 259 111 0 0 chr11 37411637 37411673 -84432183 + L1_Mus3 LINE L1 6235 6270 -368 5 870 738 182 17 11 chr11 37411844 37412022 -84431834 + CT-rich Low_complexity Low_complexity 2 180 0 5 870 207 0 0 0 chr11 37412072 37412095 -84431761 + (T)n Simple_repeat Simple_repeat 1 23 0 5 870 243 380 30 37 chr11 37412467 37412631 -84431225 - MIRb SINE MIR -71 197 35 5 870 25 0 0 0 chr11 37413776 37413801 -84430055 + AT_rich Low_complexity Low_complexity 1 25 0 5 870 2686 75 0 21 chr11 37416297 37416680 -84427176 - L1Md_F2 LINE L1 0 6582 6208 5 870 979 216 202 7 chr11 37416741 37417048 -84426808 - Lx4B LINE L1 -17 7041 6675 5 870 221 188 0 30 chr11 37418457 37418523 -84425333 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 5 870 198 0 0 0 chr11 37418529 37418551 -84425305 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 5 870 2986 61 3 0 chr11 37419398 37419777 -84424079 - L1_Mus1 LINE L1 0 6567 6188 5 870 3082 71 2 62 chr11 37419777 37420226 -84423630 + L1_Mus1 LINE L1 5768 6189 -378 5 870 226 286 13 13 chr11 37421446 37421524 -84422332 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 870 216 97 0 0 chr11 37421600 37421631 -84422225 + (TATG)n Simple_repeat Simple_repeat 4 34 0 5 870 523 92 23 0 chr11 37421700 37421787 -84422069 + (GAAAA)n Simple_repeat Simple_repeat 2 90 0 5 870 336 64 0 0 chr11 37422095 37422142 -84421714 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 870 23 33 0 0 chr11 37422668 37422698 -84421158 + AT_rich Low_complexity Low_complexity 1 30 0 5 870 186 103 0 0 chr11 37424753 37424782 -84419074 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 870 192 77 0 0 chr11 37425015 37425041 -84418815 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 870 770 154 11 29 chr11 37425888 37426062 -84417794 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 5 870 6066 62 6 5 chr11 37427305 37428110 -84415746 - L1_Mus2 LINE L1 0 6566 5761 5 870 6060 92 51 7 chr11 37429022 37429941 -84413915 + Lx3A LINE L1 6006 6965 -16 5 870 207 0 0 0 chr11 37429944 37429967 -84413889 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 870 22 0 0 0 chr11 37430314 37430336 -84413520 + AT_rich Low_complexity Low_complexity 1 22 0 5 870 40 0 0 0 chr11 37430370 37430410 -84413446 + AT_rich Low_complexity Low_complexity 1 40 0 5 870 224 391 11 0 chr11 37431845 37431937 -84411919 - MIR3 SINE MIR -17 191 99 5 870 184 30 61 0 chr11 37433410 37433443 -84410413 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 870 568 147 19 10 chr11 37433510 37433613 -84410243 - RMER1C Other Other -4 1338 1235 5 870 528 335 129 26 chr11 37433731 37434071 -84409785 + MLT1B LTR MaLR 1 375 -15 5 870 301 390 73 18 chr11 37436892 37437389 -84406467 - L2c LINE L2 -187 3188 2661 5 870 210 268 50 67 chr11 37437614 37437674 -84406182 - ID4_ SINE ID 0 83 25 5 870 514 289 103 63 chr11 37437807 37438254 -84405602 + MLT1C LTR MaLR 1 465 -2 5 870 232 305 110 0 chr11 37438548 37438630 -84405226 + B4A SINE B4 136 226 -66 5 870 258 382 66 0 chr11 37438634 37438770 -84405086 + RSINE1 SINE B4 4 148 -17 5 870 264 200 0 34 chr11 37438887 37438975 -84404881 + (CATA)n Simple_repeat Simple_repeat 2 86 0 5 870 1867 184 48 18 chr11 37439340 37440163 -84403693 + Lx5 LINE L1 5501 6446 -604 5 870 358 285 201 41 chr11 37440157 37440244 -84403612 + Lx5 LINE L1 6825 6941 -109 5 870 3995 81 11 11 chr11 37440244 37440808 -84403048 + L1_Mus3 LINE L1 6075 6638 0 5 870 358 285 201 41 chr11 37440808 37440914 -84402942 + Lx5 LINE L1 6942 7048 -2 5 870 241 263 96 63 chr11 37441089 37441221 -84402635 - L1M5 LINE L1 -3085 3061 2930 5 870 476 269 36 22 chr11 37441221 37441358 -84402498 - B1_Mur1 SINE Alu -10 139 1 5 870 241 263 96 63 chr11 37441358 37441464 -84402392 - L1M5 LINE L1 -3217 2929 2815 5 870 297 151 0 0 chr11 37441767 37441820 -84402036 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 870 201 274 101 56 chr11 37441917 37442006 -84401850 - L2 LINE L2 -517 2902 2810 5 870 387 60 0 0 chr11 37442072 37442122 -84401734 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 870 585 283 88 42 chr11 37443595 37443835 -84400021 + Lx8 LINE L1 7223 7473 0 5 870 586 212 61 96 chr11 37444023 37444221 -84399635 + B2_Mm2 SINE B2 1 191 -4 5 870 315 318 86 60 chr11 37444395 37444629 -84399227 + MLT1L LTR MaLR 192 431 -179 5 870 2714 77 67 3 chr11 37444768 37445144 -84398712 - MTB LTR MaLR 0 400 1 5 870 3062 141 17 0 chr11 37445638 37446157 -84397699 - L1_Mur2 LINE L1 -735 5142 4615 5 870 4053 76 6 15 chr11 37446349 37446897 -84396959 - L1_Mus2 LINE L1 -1 6565 6023 5 870 180 111 0 0 chr11 37447083 37447110 -84396746 + (CTA)n Simple_repeat Simple_repeat 3 29 0 5 870 215 273 15 29 chr11 37447117 37447185 -84396671 + CT-rich Low_complexity Low_complexity 3 69 0 6 870 38412 6 0 0 chr11 37447404 37452775 -84391081 + L1Md_A LINE L1 215 5586 -297 6 870 8962 6 0 0 chr11 37452775 37453771 -84390085 + L1Md_A LINE L1 5587 6582 0 6 870 531 110 55 0 chr11 37453851 37453942 -84389914 + Lx7 LINE L1 7601 7696 0 6 870 25 51 0 0 chr11 37453961 37454000 -84389856 + AT_rich Low_complexity Low_complexity 1 39 0 6 870 6295 82 4 2 chr11 37454103 37454939 -84388917 - L1_Mus1 LINE L1 0 6567 5731 6 870 3252 73 9 0 chr11 37454930 37455415 -84388441 - L1_Mus2 LINE L1 -539 6027 5533 5 870 8317 101 2 1 chr11 37455411 37456588 -84387268 + L1_Mus2 LINE L1 4362 5540 -343 5 870 3911 180 53 20 chr11 37456600 37457405 -84386451 - Lx3C LINE L1 -3 6973 6142 6 870 341 188 0 0 chr11 37457406 37457470 -84386386 + L1_Mur2 LINE L1 4783 4846 -1031 6 870 369 0 0 0 chr11 37457561 37457602 -84386254 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 870 233 331 60 16 chr11 37458809 37458993 -84384863 - L1MEf LINE L1 -4226 2189 1998 6 870 423 0 0 0 chr11 37459031 37459078 -84384778 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 870 378 263 0 0 chr11 37459182 37459258 -84384598 - ID4_ SINE ID 0 83 8 6 870 225 222 14 27 chr11 37459332 37459406 -84384450 - L1MEf LINE L1 -4668 1732 1660 6 870 308 370 19 68 chr11 37459673 37459879 -84383977 + L1MA5A LINE L1 4558 4753 -1390 6 870 321 333 28 11 chr11 37459963 37460145 -84383711 + L1MA5A LINE L1 4882 5066 -1077 6 870 341 293 138 76 chr11 37460378 37460920 -84382936 + L1MA5A LINE L1 5320 5895 -417 6 870 367 202 36 18 chr11 37461073 37461184 -84382672 + L1MA6 LINE L1 6188 6300 0 6 870 640 351 120 20 chr11 37461296 37461697 -84382159 + LTR40a LTR ERVL 1 441 -78 6 870 180 125 0 0 chr11 37464266 37464298 -84379558 + (TAA)n Simple_repeat Simple_repeat 1 32 0 6 870 405 0 0 0 chr11 37465328 37465373 -84378483 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 870 4096 63 2 0 chr11 37465520 37466042 -84377814 - L1Md_F2 LINE L1 -1 6581 6059 6 870 10200 112 31 2 chr11 37466363 37467943 -84375913 - L1_Mus3 LINE L1 -1028 4855 3231 6 870 7427 103 9 3 chr11 37467942 37469690 -84374166 + L1_Mus3 LINE L1 4875 6637 -1 6 870 279 0 0 0 chr11 37469727 37469758 -84374098 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 6 870 189 0 0 0 chr11 37469760 37469781 -84374075 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 870 626 347 43 40 chr11 37470003 37470360 -84373496 - MLT1F2 LTR MaLR 0 680 303 6 870 286 327 47 0 chr11 37470524 37470631 -84373225 - MLT1F2 LTR MaLR -437 123 12 6 870 465 66 0 0 chr11 37470631 37470692 -84373164 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 870 219 133 0 0 chr11 37471434 37471479 -84372377 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 870 324 0 0 0 chr11 37471480 37471516 -84372340 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 870 253 200 20 91 chr11 37471647 37471746 -84372110 - Lx7 LINE L1 0 7696 7605 6 870 750 254 20 12 chr11 37471728 37471943 -84371913 - Lx6 LINE L1 -191 7269 7086 6 870 226 233 89 0 chr11 37471937 37472027 -84371829 + L1MEg LINE L1 1619 1716 -4368 6 870 450 36 0 0 chr11 37472375 37472431 -84371425 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 870 219 140 0 0 chr11 37473050 37473100 -84370756 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 870 226 327 9 9 chr11 37474697 37474808 -84369048 + Lx9 LINE L1 2130 2240 -3607 6 870 620 301 162 30 chr11 37474814 37476295 -84367561 + L1M2 LINE L1 2799 4493 -1650 6 870 579 274 83 62 chr11 37476287 37476754 -84367102 + Lx9 LINE L1 4887 5363 -484 6 870 327 282 16 142 chr11 37476812 37477145 -84366711 + Lx9 LINE L1 5613 5939 -1705 6 870 691 250 43 1 chr11 37477403 37477590 -84366266 + B3A SINE B2 2 199 -17 6 870 188 250 0 23 chr11 37477628 37477714 -84366142 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 6 870 1040 103 7 14 chr11 37477888 37478036 -84365820 + B1_Mus1 SINE Alu 2 148 0 6 870 307 68 25 63 chr11 37478055 37478134 -84365722 + (CAAA)n Simple_repeat Simple_repeat 2 77 0 6 870 21 0 0 0 chr11 37478214 37478235 -84365621 + AT_rich Low_complexity Low_complexity 1 21 0 6 870 27 0 0 0 chr11 37478997 37479024 -84364832 + AT_rich Low_complexity Low_complexity 1 27 0 6 870 474 279 32 8 chr11 37480647 37480770 -84363086 - B1F SINE Alu -9 140 15 6 870 954 144 155 0 chr11 37481764 37481938 -84361918 - Lx4A LINE L1 -653 6405 6205 6 870 3998 145 38 16 chr11 37481938 37482623 -84361233 + Lx4A LINE L1 6355 7054 -4 6 870 24 0 0 0 chr11 37482623 37482647 -84361209 + AT_rich Low_complexity Low_complexity 1 24 0 6 870 396 40 0 0 chr11 37484128 37484178 -84359678 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 870 255 204 0 0 chr11 37484202 37484251 -84359605 - U2 snRNA snRNA -139 49 1 6 870 252 170 0 0 chr11 37484454 37484507 -84359349 + GA-rich Low_complexity Low_complexity 4 56 0 6 870 225 94 0 0 chr11 37485767 37485799 -84358057 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 870 25 0 0 0 chr11 37486071 37486096 -84357760 + AT_rich Low_complexity Low_complexity 1 25 0 6 870 384 300 174 9 chr11 37486191 37486403 -84357453 - RMER15 LTR ERVL -53 522 276 6 871 180 0 0 0 chr11 37487429 37487449 -84356407 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 6 871 304 289 9 85 chr11 37487560 37487666 -84356190 - B3A SINE B2 -100 98 1 6 871 214 273 26 0 chr11 37490307 37490384 -84353472 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 6 871 25 0 0 0 chr11 37491344 37491369 -84352487 + AT_rich Low_complexity Low_complexity 1 25 0 6 871 243 0 0 0 chr11 37491811 37491838 -84352018 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 871 246 32 0 0 chr11 37492658 37492689 -84351167 + (A)n Simple_repeat Simple_repeat 1 31 0 6 871 3233 144 48 5 chr11 37494438 37495016 -84348840 + Lx4A LINE L1 6454 7056 -2 6 871 22 0 0 0 chr11 37495016 37495038 -84348818 + AT_rich Low_complexity Low_complexity 1 22 0 6 871 312 344 43 62 chr11 37496575 37496794 -84347062 + MIRb SINE MIR 1 213 -55 6 871 234 269 58 7 chr11 37497387 37497518 -84346338 + L1P5 LINE L1 5478 5611 -692 6 871 181 231 0 37 chr11 37498212 37498266 -84345590 + L2a LINE L2 3372 3423 -3 6 871 204 125 25 0 chr11 37498802 37498817 -84345039 + (CAAAAA)n Simple_repeat Simple_repeat 3 18 0 6 871 336 111 0 0 chr11 37498817 37498871 -84344985 + (CAAGC)n Simple_repeat Simple_repeat 1 54 0 6 871 204 125 25 0 chr11 37498871 37498895 -84344961 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 6 871 23 54 0 0 chr11 37501993 37502030 -84341826 + AT_rich Low_complexity Low_complexity 1 37 0 1 871 21 36 0 0 chr11 37503105 37503133 -84340723 + AT_rich Low_complexity Low_complexity 1 28 0 2 871 282 29 0 0 chr11 37503780 37503815 -84340041 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 871 845 262 5 23 chr11 37504077 37504296 -84339560 + B3 SINE B2 2 216 0 4 871 361 339 92 53 chr11 37505261 37505598 -84338258 + Tigger7 DNA MER2_type 7 356 -2135 5 871 280 379 49 28 chr11 37505926 37506070 -84337786 - MIRb SINE MIR -121 147 1 6 871 4186 38 6 8 chr11 37506485 37506996 -84336860 - L1Md_F3 LINE L1 -8 6576 6067 7 871 250 327 29 9 chr11 37507205 37507310 -84336546 - MER20 DNA MER1_type 0 219 113 8 871 889 294 34 62 chr11 37507759 37508144 -84335712 - MTD LTR MaLR -15 404 42 9 871 24 32 0 0 chr11 37508727 37508758 -84335098 + AT_rich Low_complexity Low_complexity 1 31 0 1 871 374 326 83 31 chr11 37508933 37509126 -84334730 + MamRep564 Unknown Unknown 36 238 -119 1 871 950 82 32 0 chr11 37510388 37510546 -84333310 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1 871 1092 140 90 24 chr11 37512211 37512423 -84331433 + URR1A DNA MER1_type 1 226 0 1 871 244 262 58 23 chr11 37512580 37512666 -84331190 - MLT1C LTR MaLR -117 350 262 1 871 15748 73 4 8 chr11 37513157 37515292 -84328564 + L1Md_F2 LINE L1 3460 5585 -298 1 871 7412 75 0 7 chr11 37515293 37516281 -84327575 + L1Md_F2 LINE L1 5587 6567 -15 1 871 535 341 75 47 chr11 37516934 37517321 -84326535 + MLT1C LTR MaLR 70 467 0 1 871 941 358 62 54 chr11 37518752 37519496 -84324360 - Tigger7 DNA MER2_type -1725 766 17 1 871 328 139 69 7 chr11 37519850 37519995 -84323861 + (TA)n Simple_repeat Simple_repeat 2 155 0 1 871 2530 80 0 0 chr11 37519999 37520337 -84323519 - ORR1A1 LTR MaLR -8 338 1 1 871 5036 65 16 4 chr11 37520337 37521019 -84322837 - ORR1A1-int LTR MaLR 0 1792 1103 1 871 3430 59 22 0 chr11 37521000 37521459 -84322397 - ORR1A1-int LTR MaLR -1323 469 1 1 871 2372 102 9 0 chr11 37521463 37521798 -84322058 - ORR1A1 LTR MaLR -8 338 1 1 871 280 191 60 0 chr11 37521826 37521910 -84321946 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 871 21 36 0 0 chr11 37522678 37522706 -84321150 + AT_rich Low_complexity Low_complexity 1 28 0 2 871 6966 82 1 1 chr11 37523034 37523999 -84319857 - L1_Mm LINE L1 -2421 3462 2498 2 871 450 65 0 0 chr11 37524431 37524493 -84319363 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 871 1992 184 14 62 chr11 37525312 37525629 -84318227 - MTC LTR MaLR 0 421 106 2 871 8166 31 1 1 chr11 37525629 37526597 -84317259 + L1Md_T LINE L1 5614 6581 -1 2 871 1992 184 14 62 chr11 37526597 37526702 -84317154 - MTC LTR MaLR -316 105 19 2 871 227 196 0 0 chr11 37527018 37527069 -84316787 + A-rich Low_complexity Low_complexity 4 54 0 2 871 310 278 14 27 chr11 37527723 37527797 -84316059 + RSINE1 SINE B4 68 140 -25 2 871 477 0 0 0 chr11 37528046 37528099 -84315757 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 871 22 0 0 0 chr11 37528596 37528618 -84315238 + AT_rich Low_complexity Low_complexity 1 22 0 2 871 3402 35 0 0 chr11 37528906 37529302 -84314554 - MTA_Mm LTR MaLR 0 396 1 3 871 264 364 41 0 chr11 37530303 37530424 -84313432 + L1MC LINE L1 5491 5616 -2266 3 871 25 0 0 0 chr11 37531059 37531084 -84312772 + AT_rich Low_complexity Low_complexity 1 25 0 3 871 226 248 153 46 chr11 37532192 37532323 -84311533 - L1MC1 LINE L1 -20 6313 6169 3 871 191 88 29 0 chr11 37532857 37532891 -84310965 + (TTTTTA)n Simple_repeat Simple_repeat 6 40 0 3 871 456 67 0 0 chr11 37533129 37533189 -84310667 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 871 291 157 0 0 chr11 37533227 37533278 -84310578 + GA-rich Low_complexity Low_complexity 3 53 0 3 871 248 289 26 26 chr11 37533332 37533410 -84310446 - B4 SINE B4 -212 80 3 3 871 431 242 67 67 chr11 37533488 37533696 -84310160 - L1MC1 LINE L1 -263 6070 5863 3 871 232 241 0 17 chr11 37533713 37533772 -84310084 - Charlie2b DNA MER1_type -71 2711 2654 3 871 249 310 72 95 chr11 37533815 37534079 -84309777 - LTR37A LTR ERV1 0 426 169 3 871 238 256 8 8 chr11 37534178 37534300 -84309556 + (TA)n Simple_repeat Simple_repeat 2 123 0 4 871 26 30 0 0 chr11 37534420 37534453 -84309403 + AT_rich Low_complexity Low_complexity 1 33 0 4 871 357 347 33 53 chr11 37534853 37535005 -84308851 - RSINE1 SINE B4 -14 151 3 4 871 878 117 0 6 chr11 37535577 37535757 -84308099 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 871 192 111 0 0 chr11 37535757 37535793 -84308063 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 4 871 651 152 0 0 chr11 37535834 37535998 -84307858 + (TCTA)n Simple_repeat Simple_repeat 3 166 0 4 871 195 303 13 13 chr11 37536165 37536242 -84307614 + MIR3 SINE MIR 126 202 -6 4 871 31 26 0 0 chr11 37536795 37536833 -84307023 + AT_rich Low_complexity Low_complexity 1 38 0 4 871 22 0 0 0 chr11 37537338 37537360 -84306496 + AT_rich Low_complexity Low_complexity 1 22 0 4 871 771 276 65 25 chr11 37537360 37537683 -84306173 - Lx6 LINE L1 -26 7434 7099 4 871 260 359 105 6 chr11 37537666 37537837 -84306019 + Lx6 LINE L1 6953 7140 -320 4 871 688 163 8 23 chr11 37539217 37539349 -84304507 + URR1B DNA MER1_type 86 215 -10 5 871 243 299 39 0 chr11 37539371 37539448 -84304408 + MER58B DNA MER1_type 38 117 -224 5 871 1402 80 10 10 chr11 37539496 37539697 -84304159 + L1_Mus3 LINE L1 6379 6579 -59 5 871 29 0 0 0 chr11 37539808 37539837 -84304019 + AT_rich Low_complexity Low_complexity 1 29 0 5 871 307 293 154 70 chr11 37539841 37539984 -84303872 + ID_B1 SINE B4 50 204 -20 5 871 313 311 114 0 chr11 37539986 37540118 -84303738 + MER58B DNA MER1_type 128 274 -67 5 871 330 326 80 36 chr11 37541781 37541918 -84301938 - HAL1-3A_ME LINE L1 -434 2424 2282 5 871 323 294 202 23 chr11 37543676 37543805 -84300051 + MER20 DNA MER1_type 2 153 -66 5 871 651 124 100 21 chr11 37543863 37544003 -84299853 + L1_Mus3 LINE L1 6474 6624 -14 5 871 269 282 51 0 chr11 37544028 37544106 -84299750 - Charlie2a DNA MER1_type 0 2861 2780 5 871 8044 37 3 25 chr11 37544118 37545135 -84298721 - L1Md_F2 LINE L1 -1 6581 5587 5 871 235 372 100 21 chr11 37545188 37545328 -84298528 + B4A SINE B4 130 280 -12 6 871 299 113 19 0 chr11 37545352 37545405 -84298451 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 871 190 371 41 14 chr11 37546229 37546374 -84297482 + L2a LINE L2 3273 3421 -5 6 871 402 319 36 0 chr11 37546579 37546717 -84297139 - B1F1 SINE Alu 0 149 7 6 871 682 245 47 21 chr11 37546749 37546941 -84296915 - B3 SINE B2 -17 199 3 6 871 299 276 148 148 chr11 37547360 37547413 -84296443 - B3A SINE B2 0 198 149 6 871 252 100 0 0 chr11 37547413 37547453 -84296403 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 871 299 276 148 148 chr11 37547453 37547476 -84296380 - B3A SINE B2 -50 148 142 6 871 3679 57 21 0 chr11 37547476 37547946 -84295910 - L1_Mus1 LINE L1 0 6567 6088 6 871 299 276 148 148 chr11 37547946 37548064 -84295792 - B3A SINE B2 -57 141 3 6 871 254 315 21 84 chr11 37548170 37548312 -84295544 - MIRb SINE MIR -43 225 93 6 871 756 223 7 7 chr11 37549820 37549969 -84293887 - URR1A DNA MER1_type -21 205 57 6 871 405 239 202 30 chr11 37550044 37550212 -84293644 + B3 SINE B2 6 202 -14 7 871 315 0 0 0 chr11 37551761 37551796 -84292060 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 871 498 91 0 0 chr11 37554078 37554155 -84289701 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 7 871 426 284 30 111 chr11 37554192 37554390 -84289466 + B3 SINE B2 20 201 -15 7 871 878 162 14 0 chr11 37554456 37554604 -84289252 - B1_Mur4 SINE Alu 0 150 1 7 871 25 31 0 0 chr11 37554755 37554787 -84289069 + AT_rich Low_complexity Low_complexity 1 32 0 7 871 343 284 27 0 chr11 37554928 37555030 -84288826 + PB1D10 SINE Alu 14 120 0 7 871 842 76 8 0 chr11 37556036 37556155 -84287701 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 7 871 588 173 7 15 chr11 37556422 37556557 -84287299 - Lx9 LINE L1 -34 7610 7477 7 871 207 0 0 0 chr11 37556676 37556699 -84287157 + (CAGTA)n Simple_repeat Simple_repeat 3 25 0 7 871 835 174 11 0 chr11 37557296 37557474 -84286382 + CT-rich Low_complexity Low_complexity 1 180 0 8 871 331 304 111 33 chr11 37557480 37557633 -84286223 - HAL1-3A_ME LINE L1 -419 2439 2275 8 871 272 362 99 39 chr11 37559029 37559210 -84284646 + B3A SINE B2 6 197 -1 8 871 222 184 38 75 chr11 37559254 37559307 -84284549 + B1_Mus1 SINE Alu 6 56 -92 8 871 307 257 0 28 chr11 37559338 37559410 -84284446 + B1_Mur1 SINE Alu 45 114 -35 8 871 428 382 169 39 chr11 37561345 37561889 -84281967 + L1M4b LINE L1 34 648 -6686 8 871 555 200 9 9 chr11 37562065 37562181 -84281675 + URR1A DNA MER1_type 58 173 -53 8 871 847 323 63 17 chr11 37562225 37562688 -84281168 + L1M4b LINE L1 768 1251 -6083 8 871 258 271 0 0 chr11 37562703 37562762 -84281094 + ID2 SINE ID 1 59 -24 8 871 351 0 0 0 chr11 37562770 37562809 -84281047 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 871 455 282 60 53 chr11 37562968 37563336 -84280520 + L1M4b LINE L1 1528 1939 -5069 8 871 268 270 90 0 chr11 37563577 37563755 -84280101 + L1M4b LINE L1 2039 2232 -5102 8 871 443 272 52 6 chr11 37563994 37564168 -84279688 + L1M4b LINE L1 2577 2758 -4576 8 871 262 271 83 0 chr11 37564417 37564550 -84279306 + L1M4b LINE L1 3507 3650 -3684 8 871 1162 262 136 6 chr11 37564717 37565078 -84278778 + MTD LTR MaLR 1 408 -11 8 871 243 317 151 21 chr11 37565095 37565678 -84278178 + L1M4 LINE L1 2523 3181 -2965 9 871 316 230 0 11 chr11 37565673 37565761 -84278095 + Lx7 LINE L1 7610 7696 0 9 871 35389 36 1 1 chr11 37565943 37572036 -84271820 + L1Md_T LINE L1 1 5589 -297 9 871 8944 8 0 0 chr11 37572036 37573032 -84270824 + L1Md_T LINE L1 5590 6585 0 9 871 884 300 131 23 chr11 37573033 37573982 -84269874 + L1M4 LINE L1 3283 4333 -1813 9 871 1042 330 54 71 chr11 37574184 37575727 -84268129 + L1_Mur3 LINE L1 2501 4017 -1863 9 871 450 0 0 0 chr11 37575727 37575777 -84268079 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 9 871 1042 330 54 71 chr11 37575777 37575852 -84268004 + L1_Mur3 LINE L1 4018 4091 -1789 9 871 1892 296 57 38 chr11 37575855 37575958 -84267898 + Lx7 LINE L1 6306 6407 -1289 9 871 2829 49 3 0 chr11 37575958 37576303 -84267553 + ORR1A1 LTR MaLR 1 346 0 9 871 1892 296 57 38 chr11 37576303 37576887 -84266969 + Lx7 LINE L1 6408 7006 -690 9 871 1234 81 0 6 chr11 37576889 37577044 -84266812 + B2_Mm2 SINE B2 1 155 -40 9 871 504 0 0 0 chr11 37577044 37577100 -84266756 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 9 871 1234 81 0 6 chr11 37577100 37577117 -84266739 + B2_Mm2 SINE B2 156 172 -23 9 871 842 331 9 6 chr11 37577117 37577433 -84266423 + Lx7 LINE L1 6991 7307 -389 9 871 272 213 0 26 chr11 37577441 37577518 -84266338 + CT-rich Low_complexity Low_complexity 3 77 0 9 871 312 27 0 0 chr11 37577538 37577575 -84266281 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 871 209 222 83 0 chr11 37577585 37577657 -84266199 + (TTTAG)n Simple_repeat Simple_repeat 3 80 0 1 871 192 40 0 0 chr11 37577678 37577703 -84266153 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1 871 664 328 65 39 chr11 37577798 37578289 -84265567 + L1M4 LINE L1 5320 5823 -355 9 871 297 302 42 0 chr11 37578294 37578385 -84265471 + B4 SINE B4 4 98 -194 1 871 528 329 34 29 chr11 37578385 37578560 -84265296 + B3A SINE B2 1 176 -22 1 871 231 133 0 0 chr11 37578601 37578646 -84265210 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 1 871 637 331 22 0 chr11 37578708 37578889 -84264967 + B4 SINE B4 108 292 0 1 871 396 59 0 0 chr11 37579311 37579362 -84264494 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 871 28 0 0 0 chr11 37579518 37579546 -84264310 + AT_rich Low_complexity Low_complexity 1 28 0 1 871 216 337 90 0 chr11 37579655 37579744 -84264112 + B4 SINE B4 84 180 -112 1 871 621 324 17 0 chr11 37580536 37580715 -84263141 - B3A SINE B2 -14 184 3 1 871 221 294 0 14 chr11 37581311 37581380 -84262476 + L2c LINE L2 3319 3386 -1 1 871 218 336 114 59 chr11 37582460 37582697 -84261159 - L2 LINE L2 -417 3002 2753 1 871 513 0 0 0 chr11 37585602 37585659 -84258197 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 871 369 0 0 0 chr11 37585659 37585699 -84258157 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 871 198 191 0 0 chr11 37586588 37586630 -84257226 + A-rich Low_complexity Low_complexity 1 42 0 1 871 357 414 79 26 chr11 37588855 37589083 -84254773 + LTR16E2 LTR ERVL 13 252 -316 1 871 200 361 58 46 chr11 37589766 37589940 -84253916 + MIRb SINE MIR 79 254 -14 1 871 194 81 27 0 chr11 37590031 37590068 -84253788 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 871 4567 108 45 22 chr11 37590374 37591112 -84252744 - Lx LINE L1 -7 6647 5893 1 871 308 322 0 78 chr11 37591351 37591479 -84252377 + MIR3 SINE MIR 90 207 -1 1 871 313 145 86 14 chr11 37591767 37591837 -84252019 - MamRep434 DNA TcMar -175 251 177 1 871 3766 62 14 4 chr11 37592153 37592641 -84251215 - L1Md_F2 LINE L1 -218 6364 5872 1 871 1568 84 14 0 chr11 37592641 37592856 -84251000 + L1_Mus1 LINE L1 6347 6564 -3 1 871 301 343 47 24 chr11 37593722 37593892 -84249964 - Lx7 LINE L1 -618 7078 6905 1 871 521 214 17 11 chr11 37594152 37594327 -84249529 + GA-rich Low_complexity Low_complexity 2 177 0 1 871 342 245 56 21 chr11 37595709 37595851 -84248005 + Lx2B LINE L1 6833 6979 -21 1 871 197 65 0 31 chr11 37596808 37596840 -84247016 + (TATG)n Simple_repeat Simple_repeat 4 34 0 1 871 344 329 36 42 chr11 37596917 37597085 -84246771 - B4A SINE B4 -124 168 2 1 871 307 310 14 0 chr11 37598393 37598464 -84245392 + ID_B1 SINE B4 83 154 -70 1 871 6286 211 45 30 chr11 37598467 37599885 -84243971 + Lx5 LINE L1 5611 7050 0 1 871 339 301 75 54 chr11 37600019 37600258 -84243598 + L1MEf LINE L1 1965 2208 -4034 1 871 510 240 0 1 chr11 37600329 37600430 -84243426 + B1_Mur2 SINE Alu 2 101 -48 1 871 2323 58 0 3 chr11 37600430 37600725 -84243131 + L1_Mus1 LINE L1 6272 6565 -2 1 871 459 0 0 0 chr11 37600731 37600782 -84243074 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 871 459 262 8 54 chr11 37600782 37600802 -84243054 + B1_Mm SINE Alu 103 123 -24 1 871 449 34 0 17 chr11 37600892 37600952 -84242904 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 871 337 240 61 30 chr11 37601566 37601712 -84242144 + L1MEf LINE L1 3198 3341 -2805 1 871 228 133 33 16 chr11 37602010 37602071 -84241785 + GA-rich Low_complexity Low_complexity 5 66 0 1 871 23 33 0 0 chr11 37602126 37602156 -84241700 + AT_rich Low_complexity Low_complexity 1 30 0 1 871 24 0 0 0 chr11 37602325 37602349 -84241507 + AT_rich Low_complexity Low_complexity 1 24 0 1 871 318 167 0 0 chr11 37602364 37602424 -84241432 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 871 944 141 0 6 chr11 37603022 37603186 -84240670 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 1 871 9062 10 0 0 chr11 37603559 37605297 -84238559 - L1Md_T LINE L1 -1 6581 4844 1 871 280 315 144 0 chr11 37605344 37605455 -84238401 + RSINE1 SINE B4 3 129 -36 1 871 252 0 0 0 chr11 37607495 37607523 -84236333 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 871 6997 188 38 49 chr11 37607525 37610101 -84233755 + Lx5 LINE L1 4472 7044 -6 1 871 1256 294 111 8 chr11 37610305 37610781 -84233075 - Lx8 LINE L1 -121 7352 6828 1 871 527 112 37 0 chr11 37611023 37611130 -84232726 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 1 871 39 22 0 0 chr11 37611188 37611234 -84232622 + AT_rich Low_complexity Low_complexity 1 46 0 1 871 226 254 16 0 chr11 37613034 37613097 -84230759 - Lx7 LINE L1 -18 7678 7615 1 871 265 159 0 0 chr11 37613582 37613626 -84230230 + L2b LINE L2 3324 3367 -8 1 871 7260 105 23 11 chr11 37614846 37616245 -84227611 + Lx LINE L1 5235 6654 0 1 871 1088 80 0 0 chr11 37616449 37616587 -84227269 + B1_Mus2 SINE Alu 1 138 -9 1 871 594 68 0 0 chr11 37616587 37616675 -84227181 + (CAAAC)n Simple_repeat Simple_repeat 2 89 0 1 871 2417 161 93 10 chr11 37616860 37617344 -84226512 - RLTR11A LTR ERVK -4 524 1 1 872 474 218 0 0 chr11 37618798 37618908 -84224948 + (CATATA)n Simple_repeat Simple_repeat 6 115 0 1 872 300 143 0 0 chr11 37619073 37619129 -84224727 + (T)n Simple_repeat Simple_repeat 1 56 0 1 872 1060 110 7 0 chr11 37619131 37619277 -84224579 - B1_Mus2 SINE Alu 0 147 1 1 872 260 346 48 29 chr11 37619558 37619662 -84224194 + RSINE1 SINE B4 27 132 -33 1 872 226 180 20 0 chr11 37619668 37619718 -84224138 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 872 23 0 0 0 chr11 37620827 37620850 -84223006 + AT_rich Low_complexity Low_complexity 1 23 0 1 872 256 362 99 21 chr11 37621196 37621388 -84222468 + ID_B1 SINE B4 10 216 -8 1 872 272 321 70 26 chr11 37624055 37624285 -84219571 - CYRA11_Mm Unknown Y-chromosome -177 440 201 1 872 727 159 34 79 chr11 37624149 37624327 -84219529 + URR1A DNA MER1_type 57 226 0 1 872 380 257 42 49 chr11 37624965 37625108 -84218748 + L1M2 LINE L1 4342 4483 -1660 1 872 225 239 34 0 chr11 37625166 37625254 -84218602 + L1M2 LINE L1 4599 4689 -1451 1 872 1066 129 15 30 chr11 37625285 37625485 -84218371 + Lx2 LINE L1 6791 6987 -10 1 872 320 269 53 47 chr11 37625620 37625790 -84218066 + L1P5 LINE L1 5281 5451 -705 1 872 517 314 121 41 chr11 37625918 37626097 -84217759 + L1MA6 LINE L1 5622 5796 -504 1 872 2552 101 13 3 chr11 37626097 37626476 -84217380 + L1_Mus3 LINE L1 6249 6631 -7 1 872 517 314 121 41 chr11 37626476 37626808 -84217048 + L1MA6 LINE L1 5797 6174 -126 1 872 272 273 117 2 chr11 37626868 37626979 -84216877 + B4A SINE B4 3 123 -169 1 872 212 250 0 20 chr11 37627204 37627253 -84216603 + GA-rich Low_complexity Low_complexity 3 50 0 1 872 315 0 0 0 chr11 37628313 37628348 -84215508 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 872 258 32 0 0 chr11 37628353 37628384 -84215472 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 1 872 194 137 0 56 chr11 37628488 37628542 -84215314 + T-rich Low_complexity Low_complexity 1 51 0 1 872 527 103 11 0 chr11 37630434 37630521 -84213335 - L1_Mus2 LINE L1 0 6566 6479 1 872 36 40 0 0 chr11 37632167 37632217 -84211639 + AT_rich Low_complexity Low_complexity 1 50 0 1 872 209 183 17 0 chr11 37632474 37632534 -84211322 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 872 30 27 0 0 chr11 37636539 37636576 -84207280 + AT_rich Low_complexity Low_complexity 1 37 0 1 872 23 0 0 0 chr11 37636653 37636676 -84207180 + AT_rich Low_complexity Low_complexity 1 23 0 1 872 348 374 50 10 chr11 37636698 37636898 -84206958 - MER58A DNA MER1_type -15 209 2 1 872 253 323 94 25 chr11 37637016 37637302 -84206554 - Zaphod DNA Tip100 -808 3223 2918 1 872 354 271 68 76 chr11 37637564 37637800 -84206056 + L1MA6 LINE L1 4429 4662 -1481 1 872 595 308 81 10 chr11 37637874 37638132 -84205724 + L1MA6 LINE L1 4660 4937 -1206 1 872 504 0 0 0 chr11 37638132 37638188 -84205668 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 872 595 308 81 10 chr11 37638188 37638322 -84205534 + L1MA6 LINE L1 4938 5080 -1063 1 872 243 164 0 0 chr11 37638330 37638391 -84205465 + (TTG)n Simple_repeat Simple_repeat 2 62 0 1 872 324 329 48 24 chr11 37638394 37638562 -84205294 + L1MA6 LINE L1 5085 5256 -887 1 872 827 297 53 48 chr11 37638586 37639073 -84204783 + L1MA6 LINE L1 5505 6020 -280 1 872 29 78 0 0 chr11 37639088 37639152 -84204704 + AT_rich Low_complexity Low_complexity 1 64 0 1 872 727 366 90 43 chr11 37639475 37640152 -84203704 - Zaphod DNA Tip100 -3279 752 44 1 872 349 335 65 5 chr11 37640153 37640354 -84203502 + B3 SINE B2 2 214 -2 1 872 2073 123 0 55 chr11 37640419 37640763 -84203093 - L1_Mus2 LINE L1 0 6566 6242 1 872 555 16 0 0 chr11 37641147 37641211 -84202645 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 872 244 85 0 60 chr11 37642711 37642761 -84201095 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 1 872 216 97 0 0 chr11 37643071 37643102 -84200754 + (A)n Simple_repeat Simple_repeat 1 31 0 1 872 559 285 13 0 chr11 37643224 37643382 -84200474 + Lx9 LINE L1 7302 7461 -183 1 872 960 89 5 53 chr11 37643386 37643575 -84200281 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 872 495 177 15 30 chr11 37643580 37643714 -84200142 + Lx9 LINE L1 7513 7644 0 1 872 26 30 0 0 chr11 37643873 37643906 -84199950 + AT_rich Low_complexity Low_complexity 1 33 0 1 872 3398 76 2 0 chr11 37645590 37646047 -84197809 + L1_Mus3 LINE L1 5902 6358 -280 1 872 215 140 19 39 chr11 37646206 37646258 -84197598 + A-rich Low_complexity Low_complexity 3 53 0 1 872 1410 80 0 4 chr11 37646515 37646739 -84197117 + (TG)n Simple_repeat Simple_repeat 1 223 0 1 872 223 182 0 0 chr11 37646952 37646996 -84196860 + A-rich Low_complexity Low_complexity 1 44 0 1 872 23 0 0 0 chr11 37647365 37647388 -84196468 + AT_rich Low_complexity Low_complexity 1 23 0 1 872 384 22 0 0 chr11 37647480 37647525 -84196331 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 872 276 30 0 0 chr11 37647525 37647557 -84196299 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 872 562 176 74 30 chr11 37648086 37648221 -84195635 + B3A SINE B2 3 143 -55 1 872 1350 35 0 0 chr11 37648232 37648404 -84195452 + (CA)n Simple_repeat Simple_repeat 2 173 0 1 872 225 0 0 0 chr11 37648820 37648845 -84195011 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 872 296 319 68 58 chr11 37649506 37649785 -84194071 - MTEb LTR MaLR -17 362 52 2 872 249 367 0 68 chr11 37649805 37649821 -84194035 - MTEa LTR MaLR -270 109 1 2 872 263 356 40 0 chr11 37649821 37649922 -84193934 - MLT2B3 LTR ERVL -449 105 1 2 872 195 146 0 0 chr11 37651180 37651221 -84192635 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 2 872 770 113 8 0 chr11 37651298 37651422 -84192434 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 2 872 279 0 0 0 chr11 37653169 37653200 -84190656 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 872 246 105 0 0 chr11 37653420 37653458 -84190398 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 872 274 321 92 85 chr11 37653465 37653541 -84190315 - RSINE1 SINE B4 -9 156 70 2 872 591 53 0 0 chr11 37653541 37653616 -84190240 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 2 872 274 321 92 85 chr11 37653616 37653692 -84190164 - RSINE1 SINE B4 -96 69 3 2 872 275 224 13 0 chr11 37653838 37653914 -84189942 + (CATATA)n Simple_repeat Simple_repeat 5 81 0 2 872 1152 90 0 0 chr11 37654027 37654194 -84189662 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 2 872 1126 69 7 0 chr11 37654194 37654338 -84189518 - B1_Mus2 SINE Alu -2 145 1 2 872 637 368 39 69 chr11 37654341 37654446 -84189410 + B4A SINE B4 27 133 -159 2 872 1437 242 41 8 chr11 37654446 37654808 -84189048 + ORR1D1 LTR MaLR 1 374 0 2 872 637 368 39 69 chr11 37654808 37654962 -84188894 + B4A SINE B4 134 278 -14 2 872 23 0 0 0 chr11 37655125 37655148 -84188708 + AT_rich Low_complexity Low_complexity 1 23 0 2 872 2186 328 70 18 chr11 37655306 37656320 -84187536 - Lx8 LINE L1 -181 7292 6226 2 872 503 132 0 11 chr11 37657209 37657301 -84186555 + (GGA)n Simple_repeat Simple_repeat 1 91 0 2 872 499 267 159 15 chr11 37657892 37658162 -84185694 + L1MC1 LINE L1 6025 6333 0 2 872 261 57 0 0 chr11 37659086 37659121 -84184735 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 872 2188 92 6 61 chr11 37659762 37660108 -84183748 + ORR1A2 LTR MaLR 1 327 0 2 872 612 309 84 116 chr11 37660292 37660567 -84183289 + MTE2b LTR MaLR 105 370 -9 2 872 27 0 0 0 chr11 37661039 37661066 -84182790 + AT_rich Low_complexity Low_complexity 1 27 0 2 872 189 147 0 0 chr11 37662430 37662464 -84181392 + (CATA)n Simple_repeat Simple_repeat 4 37 0 2 872 3575 55 0 11 chr11 37662852 37663307 -84180549 + L1Md_F2 LINE L1 6120 6569 -13 2 872 324 225 22 137 chr11 37664352 37664491 -84179365 + MT2B LTR ERVL 128 250 -351 2 872 449 219 195 0 chr11 37664379 37664402 -84179454 + B4A SINE B4 70 221 -70 2 872 676 144 19 0 chr11 37664402 37664506 -84179350 + PB1D9 SINE Alu 9 114 -6 2 872 201 108 0 0 chr11 37664508 37664545 -84179311 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 2 872 1558 249 24 36 chr11 37666126 37666538 -84177318 - MTD LTR MaLR -8 411 5 2 872 324 120 0 0 chr11 37666538 37666588 -84177268 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 872 693 194 23 0 chr11 37666723 37666852 -84177004 - B1_Mur3 SINE Alu -17 132 1 2 872 614 195 54 24 chr11 37666878 37667046 -84176810 - Lx7 LINE L1 0 7696 7524 2 872 306 217 10 103 chr11 37667047 37667242 -84176614 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 2 872 486 0 0 0 chr11 37667927 37667981 -84175875 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 872 405 0 0 0 chr11 37668401 37668446 -84175410 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 872 595 123 16 0 chr11 37668809 37668931 -84174925 + (TA)n Simple_repeat Simple_repeat 2 125 0 2 872 227 313 45 0 chr11 37668966 37669033 -84174823 + ID2 SINE ID 12 81 -2 2 872 198 0 0 0 chr11 37669244 37669266 -84174590 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 872 922 9 17 0 chr11 37671695 37671810 -84172046 + (TG)n Simple_repeat Simple_repeat 2 118 0 2 872 1172 88 0 0 chr11 37673608 37673755 -84170101 + B1_Mus2 SINE Alu 1 147 0 2 872 180 111 0 0 chr11 37673758 37673785 -84170071 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 872 232 341 65 24 chr11 37673938 37674106 -84169750 + MER113 DNA MER1_type 79 253 -268 2 872 269 351 6 4 chr11 37674586 37674686 -84169170 + PB1D10 SINE Alu 18 118 -2 2 872 416 301 74 21 chr11 37674863 37675053 -84168803 + Lx9 LINE L1 6327 6526 -1118 2 872 336 337 45 111 chr11 37675053 37675387 -84168469 + RLTR25B LTR ERVK 1 312 -716 2 872 283 172 0 0 chr11 37675805 37675863 -84167993 + Lx9 LINE L1 6881 6938 -706 2 872 494 213 39 22 chr11 37675899 37676077 -84167779 + Lx9 LINE L1 7334 7514 -130 2 872 342 172 54 8 chr11 37676080 37676328 -84167528 + (TA)n Simple_repeat Simple_repeat 1 259 0 2 872 1018 290 61 27 chr11 37676725 37677136 -84166720 + L3 LINE CR1 1891 2315 -2174 2 872 1258 104 0 0 chr11 37677241 37677424 -84166432 + L1_Mm LINE L1 4885 5067 -816 2 872 252 358 48 68 chr11 37677669 37677710 -84166146 - ID_B1 SINE B4 -1 223 193 2 872 3372 41 2 0 chr11 37677710 37678103 -84165753 - MTA_Mm LTR MaLR 0 396 3 2 872 252 358 48 68 chr11 37678103 37678208 -84165648 - ID_B1 SINE B4 -32 192 81 2 872 718 289 37 163 chr11 37678756 37679240 -84164616 + RLTR23 LTR ERV1 8 430 0 2 872 609 323 70 0 chr11 37679384 37679585 -84164271 + B4A SINE B4 5 219 -73 2 872 216 0 0 0 chr11 37679658 37679682 -84164174 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 872 224 309 25 98 chr11 37682221 37682343 -84161513 - PB1D10 SINE Alu -4 113 1 2 872 393 117 0 0 chr11 37682365 37682425 -84161431 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 872 400 67 53 0 chr11 37682425 37682500 -84161356 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 2 872 4404 74 2 3 chr11 37682671 37683244 -84160612 + L1Md_F2 LINE L1 5998 6569 -13 2 872 390 304 56 81 chr11 37683278 37683439 -84160417 + RSINE1 SINE B4 9 165 0 2 872 1253 227 31 46 chr11 37683516 37683878 -84159978 - RLTR11A LTR ERVK -32 545 192 2 872 378 0 0 0 chr11 37683878 37683920 -84159936 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 2 872 653 240 83 44 chr11 37683920 37684198 -84159658 - RLTR11A LTR ERVK -174 271 5 2 872 234 387 35 20 chr11 37684313 37684511 -84159345 - MIR3 SINE MIR -7 201 1 2 872 438 360 72 44 chr11 37684651 37684836 -84159020 - L3 LINE CR1 -1109 3380 3183 2 872 321 26 0 0 chr11 37684836 37684874 -84158982 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 872 438 360 72 44 chr11 37684874 37685008 -84158848 - L3 LINE CR1 -1307 3182 3052 2 872 414 0 0 0 chr11 37685217 37685263 -84158593 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2 872 339 25 0 0 chr11 37685341 37685381 -84158475 + (TTG)n Simple_repeat Simple_repeat 2 41 0 2 872 284 333 8 26 chr11 37685414 37685531 -84158325 - PB1D10 SINE Alu -2 115 1 2 872 483 323 123 13 chr11 37685759 37685994 -84157862 - RMER15 LTR ERVL -19 556 296 2 872 1574 47 11 0 chr11 37686230 37686420 -84157436 - B2_Mm1t SINE B2 0 193 2 2 872 438 20 0 0 chr11 37686760 37686811 -84157045 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 872 593 47 12 0 chr11 37687912 37687997 -84155859 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 872 338 300 62 100 chr11 37688095 37688625 -84155231 - L1MB1 LINE L1 -224 5944 5435 2 872 241 316 29 48 chr11 37689112 37689215 -84154641 - MER20 DNA MER1_type -90 129 29 2 872 22 0 0 0 chr11 37689508 37689530 -84154326 + AT_rich Low_complexity Low_complexity 1 22 0 2 872 259 293 12 12 chr11 37690664 37690747 -84153109 + MLT2B4 LTR ERVL 131 213 -343 2 872 396 88 0 0 chr11 37690804 37690861 -84152995 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 2 872 402 74 0 0 chr11 37691414 37691468 -84152388 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 872 330 26 0 0 chr11 37691970 37692009 -84151847 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 872 227 177 16 0 chr11 37692009 37692071 -84151785 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 872 315 0 0 0 chr11 37692089 37692124 -84151732 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 872 464 129 40 16 chr11 37693315 37693441 -84150415 + (TA)n Simple_repeat Simple_repeat 2 130 0 2 872 24 32 0 0 chr11 37694777 37694808 -84149048 + AT_rich Low_complexity Low_complexity 1 31 0 2 872 3120 74 0 16 chr11 37695229 37695655 -84148201 - L1Md_F2 LINE L1 -1 6581 6163 2 872 237 178 0 0 chr11 37696534 37696579 -84147277 + GA-rich Low_complexity Low_complexity 1 45 0 2 872 399 219 65 73 chr11 37696627 37696750 -84147106 + RMER20B LTR ERVK 505 626 -1 2 872 28 0 0 0 chr11 37697353 37697381 -84146475 + AT_rich Low_complexity Low_complexity 1 28 0 2 872 265 336 75 27 chr11 37697844 37697991 -84145865 + MIRb SINE MIR 60 213 -55 2 872 1315 91 5 16 chr11 37698375 37698564 -84145292 + B2_Mm2 SINE B2 1 187 -8 2 872 436 269 113 7 chr11 37699045 37699187 -84144669 - B3 SINE B2 -56 160 4 2 872 811 229 77 10 chr11 37699669 37699863 -84143993 + B3 SINE B2 1 207 -9 2 872 403 336 0 0 chr11 37699903 37700013 -84143843 + B1F SINE Alu 19 128 -21 2 872 295 376 34 23 chr11 37700250 37700427 -84143429 + MER5A DNA MER1_type 1 179 -10 2 872 228 35 0 0 chr11 37701300 37701329 -84142527 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 872 528 299 34 24 chr11 37702167 37702373 -84141483 + ID_B1 SINE B4 5 212 -12 2 872 218 32 32 0 chr11 37702563 37702594 -84141262 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 872 2979 81 8 0 chr11 37702995 37703392 -84140464 - MTB LTR MaLR 0 400 1 2 872 320 94 19 0 chr11 37703407 37703460 -84140396 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 2 872 1599 171 18 112 chr11 37703494 37703941 -84139915 - RMER17C LTR ERVK -5 405 1 2 872 402 21 0 0 chr11 37704745 37704792 -84139064 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2 872 590 99 0 11 chr11 37704832 37704924 -84138932 + (GGAGA)n Simple_repeat Simple_repeat 1 91 0 3 872 349 111 0 18 chr11 37704958 37705013 -84138843 - HAL1-3A_ME LINE L1 -829 2029 1976 3 872 458 119 20 0 chr11 37705013 37705114 -84138742 + (TCTG)n Simple_repeat Simple_repeat 1 103 0 3 872 427 319 58 62 chr11 37705114 37705405 -84138451 - B4 SINE B4 0 292 3 3 872 344 40 0 20 chr11 37705435 37705486 -84138370 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 872 273 119 0 0 chr11 37706626 37706668 -84137188 + (T)n Simple_repeat Simple_repeat 1 42 0 3 872 24 0 0 0 chr11 37706796 37706820 -84137036 + AT_rich Low_complexity Low_complexity 1 24 0 3 872 401 48 0 46 chr11 37707166 37707231 -84136625 + (T)n Simple_repeat Simple_repeat 1 62 0 3 872 333 0 0 0 chr11 37707493 37707530 -84136326 + (A)n Simple_repeat Simple_repeat 1 37 0 3 872 354 198 48 68 chr11 37708537 37708640 -84135216 - PB1D10 SINE Alu -1 116 16 3 872 375 351 40 7 chr11 37708559 37708711 -84135145 - ID_B1 SINE B4 -45 179 23 3 872 230 0 33 0 chr11 37708754 37708784 -84135072 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 872 477 0 0 0 chr11 37709193 37709246 -84134610 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 3 872 799 255 19 33 chr11 37710371 37710586 -84133270 + B3 SINE B2 5 216 0 3 872 515 271 18 61 chr11 37711724 37711880 -84131976 + RSINE1 SINE B4 4 153 -12 3 872 473 0 18 0 chr11 37711880 37711937 -84131919 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 872 231 280 20 0 chr11 37712475 37712525 -84131331 + ID SINE ID 2 52 -172 3 872 22 0 0 0 chr11 37713995 37714017 -84129839 + AT_rich Low_complexity Low_complexity 1 22 0 3 872 194 128 0 41 chr11 37715079 37715128 -84128728 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 3 872 2597 159 49 12 chr11 37715139 37715647 -84128209 + RLTR11A2 LTR ERVK 1 527 0 3 872 543 155 0 0 chr11 37715663 37715766 -84128090 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 872 381 75 0 0 chr11 37715855 37715908 -84127948 + (TCC)n Simple_repeat Simple_repeat 2 54 0 3 872 453 36 0 0 chr11 37715909 37715964 -84127892 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 872 537 332 56 12 chr11 37716136 37716456 -84127400 - MERVL_2A-int LTR ERVL -262 5495 5162 3 872 2595 300 129 16 chr11 37716477 37717529 -84126327 - MERVL_2A-int LTR ERVL -1405 4352 3182 3 872 445 291 51 36 chr11 37717529 37717711 -84126145 + ORR1D2 LTR MaLR 1 185 -174 3 872 273 178 55 18 chr11 37717722 37717831 -84126025 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 3 872 567 0 0 0 chr11 37717838 37717901 -84125955 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 872 431 297 112 31 chr11 37717901 37718061 -84125795 + ORR1D2 LTR MaLR 185 357 -13 3 872 1640 281 23 32 chr11 37718069 37718592 -84125264 + ORR1D2-int LTR MaLR 1 518 -852 3 872 1071 261 72 41 chr11 37718569 37719047 -84124809 + ORR1D2-int LTR MaLR 842 1527 -53 3 872 1165 284 21 31 chr11 37719047 37719390 -84124466 + ORR1D2 LTR MaLR 1 350 -29 3 872 477 324 148 7 chr11 37719420 37719697 -84124159 - MERVL_2A-int LTR ERVL -2414 3071 2756 3 872 1563 298 76 43 chr11 37719806 37720057 -84123799 - MERVL_2A-int LTR ERVL -3579 2178 1930 3 872 198 0 0 0 chr11 37720057 37720079 -84123777 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 872 1563 298 76 43 chr11 37720079 37720501 -84123355 - MERVL_2A-int LTR ERVL -3828 1929 1483 3 872 700 326 103 47 chr11 37720527 37720846 -84123010 - MTE2b LTR MaLR -42 337 1 3 872 1013 321 69 24 chr11 37720896 37720939 -84122917 - MERVL_2A-int LTR ERVL -4543 1171 1129 3 872 1923 172 63 6 chr11 37720939 37721302 -84122554 + ORR1C2 LTR MaLR 1 384 0 3 872 1013 332 73 20 chr11 37721302 37722171 -84121685 - MERVL_2A-int LTR ERVL -4586 1128 226 3 872 482 46 0 15 chr11 37722378 37722444 -84121412 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 872 619 370 63 19 chr11 37722498 37722768 -84121088 - B4A SINE B4 -8 284 3 3 872 517 324 26 97 chr11 37722768 37723110 -84120746 - MT2A LTR ERVL -5 528 211 3 872 235 265 65 84 chr11 37723283 37723390 -84120466 - MTEa LTR MaLR -162 217 113 3 872 244 274 55 36 chr11 37723422 37723532 -84120324 - RMER20A LTR ERVK -9 507 396 3 872 317 243 27 101 chr11 37723476 37723595 -84120261 - B1F1 SINE Alu -25 124 15 3 872 348 232 0 99 chr11 37723635 37723726 -84120130 - ID_B1 SINE B4 -2 222 141 3 872 747 305 103 15 chr11 37723799 37724062 -84119794 - B4A SINE B4 0 292 7 3 872 241 365 0 26 chr11 37724065 37724141 -84119715 - ID_B1 SINE B4 -67 157 84 3 872 225 246 16 32 chr11 37724418 37724481 -84119375 - MLT1I LTR MaLR -257 154 93 3 872 203 366 7 43 chr11 37724806 37724946 -84118910 - MIR SINE MIR 0 262 128 3 872 267 104 0 0 chr11 37725045 37725093 -84118763 + (T)n Simple_repeat Simple_repeat 1 48 0 3 872 219 302 188 30 chr11 37726921 37727054 -84116802 + MIR SINE MIR 14 167 -95 3 872 615 367 98 71 chr11 37727294 37727804 -84116052 + MER21B LTR ERV1 134 657 -206 3 872 270 136 0 0 chr11 37729210 37729254 -84114602 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 3 872 573 327 21 4 chr11 37729498 37729668 -84114188 - B3A SINE B2 0 216 48 3 872 1964 166 128 5 chr11 37730067 37730442 -84113414 - MTC LTR MaLR 0 421 1 3 872 315 65 0 0 chr11 37730686 37730732 -84113124 + (A)n Simple_repeat Simple_repeat 1 46 0 3 872 954 84 0 8 chr11 37731296 37731428 -84112428 - B1_Mus1 SINE Alu 0 148 18 3 872 1368 98 49 0 chr11 37731429 37731707 -84112149 + L1_Mus2 LINE L1 6350 6566 0 3 872 186 378 45 9 chr11 37731730 37731842 -84112014 - L2 LINE L2 -569 2850 2735 3 872 302 285 104 36 chr11 37732273 37732437 -84111419 + L1ME1 LINE L1 5837 6007 -172 3 872 441 0 0 0 chr11 37732437 37732486 -84111370 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 872 302 285 104 36 chr11 37732486 37732572 -84111284 + L1ME1 LINE L1 6008 6103 -76 3 872 23 78 0 0 chr11 37732761 37732812 -84111044 + AT_rich Low_complexity Low_complexity 1 51 0 3 872 15794 15 0 1 chr11 37734444 37736265 -84107591 + L1Md_A LINE L1 3767 5586 -297 3 872 8218 30 1 36 chr11 37736265 37737294 -84106562 + L1Md_A LINE L1 5587 6579 -3 3 872 368 326 62 0 chr11 37737714 37737858 -84105998 - MamRep605 Unknown Unknown -253 623 471 3 872 370 346 58 29 chr11 37738177 37738385 -84105471 + MIRb SINE MIR 38 251 -17 3 872 308 224 107 83 chr11 37739058 37739199 -84104657 + MLT1A1 LTR MaLR 223 408 0 3 872 404 290 37 0 chr11 37739315 37739422 -84104434 - RSINE1 SINE B4 -11 154 44 3 872 265 344 78 19 chr11 37740310 37740464 -84103392 - MIR SINE MIR -56 206 44 3 872 4027 62 2 4 chr11 37741924 37742428 -84101428 - RLTR1C LTR ERV1 0 503 1 3 872 203 179 0 0 chr11 37742649 37742688 -84101168 + (TAA)n Simple_repeat Simple_repeat 3 41 0 3 872 536 335 32 23 chr11 37743259 37743476 -84100380 - MER58A DNA MER1_type -2 222 4 3 872 223 329 27 14 chr11 37746716 37746790 -84097066 - L2b LINE L2 -2 3373 3299 3 872 23 0 0 0 chr11 37747238 37747261 -84096595 + AT_rich Low_complexity Low_complexity 1 23 0 3 872 315 0 0 0 chr11 37747545 37747580 -84096276 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 873 361 362 50 33 chr11 37750977 37751016 -84092840 - MLT1F2 LTR MaLR -354 206 164 3 873 4780 4 0 0 chr11 37751016 37751546 -84092310 - L1Md_A LINE L1 0 6582 6053 3 873 1935 186 36 84 chr11 37751548 37751987 -84091869 + MTC LTR MaLR 4 421 0 3 873 361 362 50 33 chr11 37751987 37752124 -84091732 - MLT1F2 LTR MaLR -397 163 24 3 873 239 271 82 0 chr11 37752136 37752221 -84091635 + MLT1F2 LTR MaLR 392 483 -77 3 873 4258 38 0 0 chr11 37752575 37753081 -84090775 + L1Md_F2 LINE L1 6075 6580 -2 3 873 1153 68 7 0 chr11 37753099 37753246 -84090610 + B1_Mus1 SINE Alu 1 148 0 3 873 579 316 51 0 chr11 37753272 37753430 -84090426 - ID_B1 SINE B4 -58 166 1 3 873 342 100 0 0 chr11 37753719 37753779 -84090077 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 3 873 349 122 9 18 chr11 37753792 37753856 -84090000 - B2_Mm2 SINE B2 -102 114 48 3 873 1302 74 11 6 chr11 37753904 37754081 -84089775 - B2_Mm1t SINE B2 -14 179 2 3 873 24 32 0 0 chr11 37754309 37754340 -84089516 + AT_rich Low_complexity Low_complexity 1 31 0 3 873 1945 78 0 0 chr11 37754341 37754596 -84089260 - L1_Mus2 LINE L1 0 6566 6312 3 873 595 261 19 35 chr11 37754674 37754873 -84088983 - B3 SINE B2 0 195 3 3 873 326 237 110 30 chr11 37756423 37756523 -84087333 - MLT1A LTR MaLR 0 374 267 3 873 368 293 46 20 chr11 37756581 37756734 -84087122 - RSINE1 SINE B4 -8 157 1 3 873 387 41 0 0 chr11 37756893 37756942 -84086914 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 873 290 250 56 0 chr11 37756991 37757063 -84086793 - ID_B1 SINE B4 -47 177 102 3 873 595 203 52 9 chr11 37757167 37757310 -84086546 - MER5A1 DNA MER1_type -9 180 23 3 873 296 319 78 23 chr11 37757642 37757817 -84086039 - MIR3 SINE MIR -2 206 29 3 873 21 36 0 0 chr11 37758019 37758047 -84085809 + AT_rich Low_complexity Low_complexity 1 28 0 3 873 252 252 24 56 chr11 37758552 37758678 -84085178 + CT-rich Low_complexity Low_complexity 4 125 0 3 873 216 125 0 0 chr11 37758679 37758711 -84085145 - PB1D10 SINE Alu -21 96 65 3 873 353 330 14 0 chr11 37759740 37759862 -84083994 - PB1D10 SINE Alu -20 129 1 3 873 461 169 0 0 chr11 37759954 37760025 -84083831 - MTC LTR MaLR 0 421 351 3 873 34 55 0 0 chr11 37760025 37760080 -84083776 + AT_rich Low_complexity Low_complexity 1 55 0 3 873 321 248 152 70 chr11 37760148 37760391 -84083465 - L1ME1 LINE L1 -67 6112 5850 3 873 32 43 0 0 chr11 37760756 37760802 -84083054 + AT_rich Low_complexity Low_complexity 1 46 0 3 873 1033 144 208 46 chr11 37760811 37761051 -84082805 - Lx3C LINE L1 -7 6969 6691 3 873 3329 114 97 42 chr11 37761035 37761632 -84082224 + Lx3C LINE L1 6085 6714 -262 3 873 522 335 5 61 chr11 37762803 37763016 -84080840 - B3 SINE B2 -15 201 1 3 873 549 294 66 52 chr11 37763425 37763637 -84080219 + ID_B1 SINE B4 1 215 -9 3 873 342 45 0 0 chr11 37763638 37763682 -84080174 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 873 1247 307 48 5 chr11 37763889 37764282 -84079574 + Lx6 LINE L1 7044 7453 -7 3 873 3204 46 13 0 chr11 37764301 37764692 -84079164 - MTA_Mm LTR MaLR 0 396 1 3 873 262 308 101 14 chr11 37765006 37765223 -84078633 - L2 LINE L2 -1064 2355 2120 3 873 720 91 0 0 chr11 37765609 37765719 -84078137 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 873 212 193 11 46 chr11 37765722 37765809 -84078047 + CT-rich Low_complexity Low_complexity 1 84 0 4 873 328 104 0 29 chr11 37765820 37765889 -84077967 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 873 351 0 0 0 chr11 37766280 37766319 -84077537 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 873 705 281 114 23 chr11 37766792 37767135 -84076721 - MTE2b LTR MaLR -4 375 2 4 873 414 143 0 0 chr11 37769865 37769942 -84073914 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 4 873 1118 61 0 33 chr11 37770026 37770039 -84073817 - B1_Mus1 SINE Alu 0 148 138 4 873 307 55 18 18 chr11 37770039 37770094 -84073762 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 873 1118 61 0 33 chr11 37770094 37770233 -84073623 - B1_Mus1 SINE Alu -11 137 1 4 873 393 275 145 0 chr11 37771141 37771279 -84072577 - RSINE1 SINE B4 -4 161 4 4 873 1231 149 86 0 chr11 37771682 37771904 -84071952 - L1_Mus3 LINE L1 0 6638 6398 4 873 3430 98 65 0 chr11 37771905 37772396 -84071460 + L1_Mm LINE L1 5288 5810 -73 4 873 321 67 0 22 chr11 37774360 37774406 -84069450 - HAL1-3A_ME LINE L1 -839 2019 1975 4 873 192 135 0 0 chr11 37774408 37774445 -84069411 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 873 305 154 19 0 chr11 37774445 37774497 -84069359 - HAL1-3A_ME LINE L1 -830 2028 1976 4 873 242 169 15 0 chr11 37774498 37774563 -84069293 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 873 305 151 0 19 chr11 37774566 37774620 -84069236 - HAL1-3A_ME LINE L1 -830 2028 1976 4 873 411 208 0 0 chr11 37774623 37774748 -84069108 + (TG)n Simple_repeat Simple_repeat 2 126 0 4 873 315 132 0 19 chr11 37774751 37774805 -84069051 - HAL1-3A_ME LINE L1 -831 2027 1975 4 873 327 173 0 0 chr11 37774807 37774888 -84068968 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 873 359 329 12 75 chr11 37774897 37775058 -84068798 - RSINE1 SINE B4 0 165 15 4 873 186 238 141 16 chr11 37775690 37775754 -84068102 + L2 LINE L2 448 519 -2900 4 873 570 260 16 0 chr11 37777371 37777494 -84066362 - B1F SINE Alu -18 131 7 4 873 21 71 0 0 chr11 37778469 37778511 -84065345 + AT_rich Low_complexity Low_complexity 1 42 0 4 873 419 149 158 2 chr11 37779198 37779291 -84064565 - B1_Mm SINE Alu -2 147 41 4 873 1103 70 0 7 chr11 37780105 37780248 -84063608 + B1_Mus1 SINE Alu 1 142 -6 4 873 189 94 0 0 chr11 37780252 37780284 -84063572 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4 873 392 316 0 0 chr11 37781477 37781575 -84062281 + RSINE1 SINE B4 31 128 -37 4 873 4513 226 6 13 chr11 37781583 37782562 -84061294 + MERVL_2A-int LTR ERVL 4212 5183 -578 4 873 862 132 60 11 chr11 37782560 37782743 -84061113 + MERVL_2A-int LTR ERVL 5440 5631 -130 4 873 342 296 0 0 chr11 37782760 37782939 -84060917 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 873 336 361 34 27 chr11 37783039 37783187 -84060669 - B4A SINE B4 -141 151 3 4 873 193 349 47 0 chr11 37783232 37783318 -84060538 - L2c LINE L2 -25 3362 3273 4 873 3472 158 26 22 chr11 37783732 37784378 -84059478 - RMER6A LTR ERVK 0 756 108 4 873 725 33 0 0 chr11 37784378 37784468 -84059388 + L1_Mus1 LINE L1 6381 6470 -97 4 873 218 311 65 22 chr11 37785481 37785573 -84058283 - MIRb SINE MIR -87 181 86 4 873 553 80 11 11 chr11 37785701 37785790 -84058066 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 873 297 51 0 0 chr11 37785790 37785829 -84058027 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 873 22 0 0 0 chr11 37786647 37786669 -84057187 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 248 243 0 0 chr11 37789409 37789483 -84054373 - L1MB3 LINE L1 -1 6179 6106 4 873 556 291 103 35 chr11 37789696 37790180 -84053676 - L1MB3 LINE L1 -348 5835 5319 4 873 249 293 77 45 chr11 37790271 37790582 -84053274 - L1M4 LINE L1 -923 5223 4903 4 873 265 302 142 49 chr11 37790671 37790855 -84053001 + MER63C DNA AcHobo 570 772 -158 4 873 432 0 0 0 chr11 37790855 37790903 -84052953 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 873 265 302 142 49 chr11 37790903 37790944 -84052912 + MER63C DNA AcHobo 773 815 -115 4 873 231 246 95 51 chr11 37791239 37791403 -84052453 + MTEb LTR MaLR 234 405 -14 4 873 212 59 29 0 chr11 37792017 37792051 -84051805 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 873 207 0 0 0 chr11 37793398 37793421 -84050435 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 873 23 54 0 0 chr11 37793551 37793588 -84050268 + AT_rich Low_complexity Low_complexity 1 37 0 4 873 216 0 0 0 chr11 37794036 37794060 -84049796 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 873 26 0 0 0 chr11 37795779 37795805 -84048051 + AT_rich Low_complexity Low_complexity 1 26 0 4 873 1103 295 40 17 chr11 37798148 37798500 -84045356 + MTE2b LTR MaLR 12 371 -8 4 873 266 286 107 30 chr11 37798512 37798701 -84045155 - RMER17D LTR ERVK -329 560 353 4 873 1190 95 6 0 chr11 37798701 37798880 -84044976 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 873 266 286 107 30 chr11 37798880 37798924 -84044932 - RMER17D LTR ERVK -537 352 309 4 873 1488 219 54 10 chr11 37799464 37799778 -84044078 + ORR1B2 LTR MaLR 1 328 -39 4 873 2430 165 59 11 chr11 37799887 37800358 -84043498 - Lx LINE L1 -8 6646 6153 4 873 6423 110 23 8 chr11 37800345 37801329 -84042527 + Lx3A LINE L1 5978 6976 -5 4 873 325 339 83 0 chr11 37801342 37801463 -84042393 + B4 SINE B4 83 213 -79 4 873 288 0 0 0 chr11 37801516 37801548 -84042308 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 873 606 197 0 0 chr11 37801554 37801681 -84042175 + GA-rich Low_complexity Low_complexity 2 128 0 4 873 2002 257 94 73 chr11 37801837 37802209 -84041647 - RMER17B LTR ERVK -11 897 526 4 873 186 43 0 0 chr11 37802209 37802232 -84041624 + (G)n Simple_repeat Simple_repeat 1 23 0 4 873 2002 240 101 54 chr11 37802232 37802775 -84041081 - RMER17B LTR ERVK -387 571 2 4 873 230 342 95 7 chr11 37803099 37803246 -84040610 + MLT1A LTR MaLR 215 374 0 4 873 1001 116 6 0 chr11 37804533 37804697 -84039159 + (TC)n Simple_repeat Simple_repeat 2 166 0 4 873 285 182 0 0 chr11 37804697 37804752 -84039104 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 873 234 0 0 0 chr11 37804753 37804779 -84039077 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 873 507 289 89 0 chr11 37804992 37805182 -84038674 + B3 SINE B2 5 211 -5 4 873 188 100 25 0 chr11 37805638 37805678 -84038178 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 873 489 332 19 37 chr11 37807715 37807931 -84035925 - MER58A DNA MER1_type -2 222 11 4 873 254 362 44 93 chr11 37808635 37809022 -84034834 - L2c LINE L2 -2 3385 3018 4 873 659 87 19 0 chr11 37809032 37809135 -84034721 + (CAAAA)n Simple_repeat Simple_repeat 3 107 0 4 873 362 235 96 50 chr11 37810325 37810550 -84033306 - L1M2 LINE L1 -893 5410 5170 4 873 231 36 0 0 chr11 37810609 37810637 -84033219 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4 873 2254 172 42 33 chr11 37810638 37811089 -84032767 - Lx3C LINE L1 -11 6965 6511 4 873 770 269 1 49 chr11 37811133 37811440 -84032416 + L1VL1 LINE L1 15 496 -5926 4 873 3105 191 70 40 chr11 37811463 37812034 -84031822 + L1_Mus2 LINE L1 355 949 -5667 4 873 2672 40 0 0 chr11 37812034 37812356 -84031500 + L1Md_T LINE L1 6260 6581 -1 4 873 27408 144 30 22 chr11 37812356 37813150 -84030706 + L1_Mus2 LINE L1 950 1764 -4119 4 873 3872 61 21 10 chr11 37813150 37813666 -84030190 + L1Md_F2 LINE L1 6061 6582 0 4 873 27408 122 12 14 chr11 37813666 37815409 -84028447 + L1_Mus2 LINE L1 1765 3474 -2409 4 873 5266 61 0 0 chr11 37815409 37816068 -84027788 + L1Md_F2 LINE L1 5924 6582 0 4 873 27408 122 12 14 chr11 37816068 37817330 -84026526 + L1_Mus2 LINE L1 3475 4734 -1149 4 873 281 26 0 26 chr11 37817330 37817369 -84026487 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 873 27408 102 6 6 chr11 37817369 37819196 -84024660 + L1_Mus2 LINE L1 4735 6654 0 4 873 488 339 17 3 chr11 37819281 37819574 -84024282 - L1M2 LINE L1 -1130 5013 4717 4 873 918 96 0 0 chr11 37819588 37819745 -84024111 + (TC)n Simple_repeat Simple_repeat 2 158 0 4 873 423 0 0 0 chr11 37819745 37819791 -84024065 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 873 1684 307 54 138 chr11 37819829 37820641 -84023215 + MTE2b-int LTR MaLR 683 1580 0 4 873 852 309 48 44 chr11 37820641 37821040 -84022816 + MTE2b LTR MaLR 1 401 -18 4 873 504 0 0 0 chr11 37821882 37821938 -84021918 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 873 440 333 66 53 chr11 37822652 37822896 -84020960 + MER47B DNA MER2_type 1 247 -171 4 873 180 0 0 0 chr11 37824742 37824762 -84019094 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 873 645 262 16 20 chr11 37825214 37825402 -84018454 + B3A SINE B2 3 180 -15 4 873 22 0 0 0 chr11 37826233 37826255 -84017601 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 248 254 0 0 chr11 37826459 37826514 -84017342 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 4 873 405 0 0 0 chr11 37826720 37826765 -84017091 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 873 33912 34 0 0 chr11 37826782 37832189 -84011667 + L1Md_T LINE L1 86 5589 -297 4 873 8945 9 0 0 chr11 37832189 37833185 -84010671 + L1Md_T LINE L1 5590 6585 0 4 873 771 164 0 0 chr11 37833195 37833330 -84010526 + B1_Mur4 SINE Alu 15 150 0 4 873 22 0 0 0 chr11 37833330 37833352 -84010504 + AT_rich Low_complexity Low_complexity 1 22 0 4 873 1376 243 103 11 chr11 37833438 37833796 -84010060 - MTD LTR MaLR -8 411 21 4 873 1218 251 36 20 chr11 37834194 37834499 -84009357 - Lx2B LINE L1 -17 6983 6674 4 873 1568 166 14 0 chr11 37834501 37834779 -84009077 + Lx2B LINE L1 6386 6667 -333 4 873 359 315 55 9 chr11 37835026 37835135 -84008721 + PB1D10 SINE Alu 3 116 -1 4 873 259 319 114 42 chr11 37835232 37835494 -84008362 + L1MEc LINE L1 258 538 -5862 4 873 295 323 60 22 chr11 37836282 37836692 -84007164 + L1MEc LINE L1 3862 4285 -2034 4 873 3413 127 5 20 chr11 37836704 37837259 -84006597 - L1_Mus3 LINE L1 -6 6632 6086 4 873 573 336 80 38 chr11 37837276 37838141 -84005715 + L1MEc LINE L1 4729 5644 -708 4 873 186 43 0 0 chr11 37838929 37838952 -84004904 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 873 327 25 0 0 chr11 37839710 37839750 -84004106 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 873 28011 128 12 16 chr11 37839813 37846038 -83997818 + L1_Mus3 LINE L1 419 6613 -25 4 873 4136 64 38 11 chr11 37846054 37846605 -83997251 - L1Md_F2 LINE L1 0 6582 6017 4 873 225 0 0 0 chr11 37846607 37846632 -83997224 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 873 21 0 0 0 chr11 37846755 37846776 -83997080 + AT_rich Low_complexity Low_complexity 1 21 0 4 873 545 259 83 14 chr11 37847170 37847315 -83996541 + RSINE1 SINE B4 9 163 -2 4 873 345 47 0 0 chr11 37850680 37850723 -83993133 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 873 261 0 0 0 chr11 37850723 37850752 -83993104 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 873 192 77 0 0 chr11 37850752 37850778 -83993078 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 873 491 296 63 0 chr11 37851054 37851213 -83992643 - B3A SINE B2 -17 181 13 5 873 43 56 0 0 chr11 37851610 37851681 -83992175 + AT_rich Low_complexity Low_complexity 1 71 0 5 873 31 26 0 0 chr11 37851814 37851852 -83992004 + AT_rich Low_complexity Low_complexity 1 38 0 5 873 202 62 62 0 chr11 37852763 37852795 -83991061 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 5 873 189 0 0 0 chr11 37853122 37853143 -83990713 + (TC)n Simple_repeat Simple_repeat 1 21 0 5 873 737 197 0 58 chr11 37853373 37853529 -83990327 + B1_Mus2 SINE Alu 1 147 0 5 873 350 146 37 25 chr11 37853531 37853698 -83990158 + (TCTA)n Simple_repeat Simple_repeat 1 169 0 5 873 203 152 0 0 chr11 37854141 37854174 -83989682 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 873 395 52 17 0 chr11 37854191 37854249 -83989607 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 5 873 201 121 0 0 chr11 37854259 37854292 -83989564 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 5 873 188 100 0 24 chr11 37855206 37855247 -83988609 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 5 873 216 111 0 0 chr11 37856574 37856610 -83987246 + (ATG)n Simple_repeat Simple_repeat 2 37 0 5 873 229 379 42 0 chr11 37857594 37857689 -83986167 + PB1D10 SINE Alu 10 108 -9 5 873 445 279 41 0 chr11 37857967 37858089 -83985767 - PB1 SINE Alu 0 127 1 5 873 317 24 0 23 chr11 37859884 37859927 -83983929 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 5 873 328 329 61 65 chr11 37860757 37861026 -83982830 + B4 SINE B4 1 270 -22 5 873 365 0 22 0 chr11 37861026 37861071 -83982785 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 873 501 17 0 0 chr11 37861071 37861128 -83982728 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 873 236 315 95 52 chr11 37861346 37861557 -83982299 - L1MA9 LINE L1 -149 6163 5944 5 873 435 279 61 24 chr11 37861921 37862086 -83981770 + B4A SINE B4 1 171 -121 5 873 363 311 24 40 chr11 37862444 37862568 -83981288 - RSINE1 SINE B4 -41 124 3 5 873 21 0 0 0 chr11 37862665 37862686 -83981170 + AT_rich Low_complexity Low_complexity 1 21 0 5 873 693 314 13 48 chr11 37863190 37863421 -83980435 + B4A SINE B4 2 224 -68 5 873 36 23 0 0 chr11 37864413 37864456 -83979400 + AT_rich Low_complexity Low_complexity 1 43 0 5 873 621 67 0 119 chr11 37864546 37864664 -83979192 - L1_Mus2 LINE L1 0 6566 6463 5 873 19389 160 100 24 chr11 37864692 37866185 -83977671 + L1_Mus3 LINE L1 410 1954 -3932 5 873 387 0 0 0 chr11 37866185 37866228 -83977628 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 5 873 19389 178 116 11 chr11 37866228 37868547 -83975309 + L1_Mus3 LINE L1 1955 4430 -1456 5 873 221 0 35 0 chr11 37868547 37868576 -83975280 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 873 19389 141 99 18 chr11 37868576 37870423 -83973433 + L1_Mus3 LINE L1 4431 6638 0 5 873 776 310 12 12 chr11 37870577 37870832 -83973024 + Lx6 LINE L1 7195 7449 -11 5 873 315 0 0 0 chr11 37871587 37871622 -83972234 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 873 4513 178 29 33 chr11 37871834 37872718 -83971138 + RMER13B LTR ERVK 28 908 0 5 873 409 227 125 0 chr11 37872877 37872965 -83970891 + B1_Mur2 SINE Alu 5 103 -46 5 873 231 125 0 0 chr11 37873079 37873119 -83970737 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 873 459 0 0 0 chr11 37873196 37873247 -83970609 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 873 521 199 281 11 chr11 37875070 37875248 -83968608 + URR1A DNA MER1_type 1 226 0 5 873 571 232 17 72 chr11 37875335 37875516 -83968340 - Lx6 LINE L1 -4 7456 7286 5 873 245 235 0 19 chr11 37875610 37875662 -83968194 - B1_Mur1 SINE Alu -13 136 86 5 873 267 297 83 38 chr11 37875900 37876033 -83967823 - MER5A1 DNA MER1_type -1 165 27 5 873 795 174 6 11 chr11 37876913 37877093 -83966763 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 873 226 188 94 0 chr11 37877096 37877160 -83966696 + Lx9 LINE L1 7569 7638 -6 5 873 582 355 68 8 chr11 37877162 37877634 -83966222 + L1ME2 LINE L1 5424 5923 -241 5 873 727 199 78 8 chr11 37877894 37878079 -83965777 + RMER19A LTR ERVK 25 261 -476 5 873 1524 124 4 34 chr11 37878104 37878370 -83965486 + Lx LINE L1 6396 6653 -1 5 873 252 0 0 0 chr11 37878373 37878401 -83965455 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 5 873 1271 148 25 1 chr11 37878401 37878689 -83965167 + RMER19A LTR ERVK 555 902 0 5 873 22 0 0 0 chr11 37878892 37878914 -83964942 + AT_rich Low_complexity Low_complexity 1 22 0 5 873 369 121 40 10 chr11 37879213 37879313 -83964543 + (TCTCTG)n Simple_repeat Simple_repeat 4 106 0 5 873 703 218 7 0 chr11 37879330 37879477 -83964379 - B1_Mur4 SINE Alu -2 148 1 5 874 199 346 57 50 chr11 37880426 37880566 -83963290 + MIR SINE MIR 84 224 -38 5 874 463 156 24 16 chr11 37880977 37881101 -83962755 + CT-rich Low_complexity Low_complexity 1 125 0 5 874 26 64 0 0 chr11 37882329 37882376 -83961480 + AT_rich Low_complexity Low_complexity 1 47 0 5 874 267 152 0 0 chr11 37883590 37883636 -83960220 + (TAA)n Simple_repeat Simple_repeat 1 46 0 5 874 432 0 0 0 chr11 37883721 37883769 -83960087 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 874 998 122 0 7 chr11 37883965 37884113 -83959743 - B1_Mus1 SINE Alu 0 148 2 5 874 672 13 0 0 chr11 37884448 37884525 -83959331 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 5 874 336 48 0 0 chr11 37884525 37884567 -83959289 + (TCC)n Simple_repeat Simple_repeat 3 44 0 5 874 414 0 0 0 chr11 37884567 37884613 -83959243 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 874 305 231 38 25 chr11 37884946 37885026 -83958830 - MIRb SINE MIR -18 250 170 5 874 219 296 0 0 chr11 37885246 37885327 -83958529 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 874 22 56 0 0 chr11 37885397 37885433 -83958423 + AT_rich Low_complexity Low_complexity 1 36 0 5 874 180 0 0 0 chr11 37886444 37886464 -83957392 + (T)n Simple_repeat Simple_repeat 1 20 0 5 874 273 379 29 58 chr11 37887130 37887301 -83956555 + MER5A DNA MER1_type 14 179 -10 5 874 200 224 41 0 chr11 37888021 37888070 -83955786 - L2 LINE L2 -354 3065 3015 5 874 182 351 78 0 chr11 37889263 37889340 -83954516 - L2b LINE L2 -303 3072 2990 5 874 216 171 0 0 chr11 37889876 37889917 -83953939 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 874 548 335 58 6 chr11 37889958 37890189 -83953667 + B4 SINE B4 1 245 -47 5 874 264 122 0 0 chr11 37890195 37890236 -83953620 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 5 874 194 0 39 0 chr11 37890319 37890345 -83953511 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 874 7521 59 9 6 chr11 37892197 37893347 -83950509 - L1Md_F2 LINE L1 -1 6581 5432 5 874 10154 75 1 1 chr11 37893353 37894709 -83949147 + L1Md_F2 LINE L1 4110 5465 -418 5 874 28 0 0 0 chr11 37895127 37895155 -83948701 + AT_rich Low_complexity Low_complexity 1 28 0 5 874 28 0 0 0 chr11 37895486 37895514 -83948342 + AT_rich Low_complexity Low_complexity 1 28 0 5 874 259 306 10 0 chr11 37896420 37896518 -83947338 - Lx7 LINE L1 -17 7679 7581 5 874 452 56 28 0 chr11 37896528 37896599 -83947257 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 5 874 189 219 0 0 chr11 37896602 37896675 -83947181 + (CAGAGA)n Simple_repeat Simple_repeat 4 76 0 5 874 278 362 101 27 chr11 37897206 37897464 -83946392 + MLT1A0 LTR MaLR 89 365 0 5 874 317 80 20 0 chr11 37898039 37898089 -83945767 + RLTR31B_Mm LTR ERVK 1 51 -506 5 874 282 308 154 70 chr11 37899204 37899431 -83944425 + MTEa LTR MaLR 6 251 -128 5 874 28 29 0 0 chr11 37899500 37899535 -83944321 + AT_rich Low_complexity Low_complexity 1 35 0 5 874 510 17 0 0 chr11 37900262 37900321 -83943535 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 874 338 270 21 53 chr11 37900355 37900449 -83943407 - RSINE1 SINE B4 -72 93 3 5 874 414 0 0 0 chr11 37901328 37901374 -83942482 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 874 537 347 182 13 chr11 37901472 37901863 -83941993 + MLT1F2 LTR MaLR 102 558 -2 5 874 275 356 59 32 chr11 37902106 37902292 -83941564 + L2c LINE L2 3197 3387 0 5 874 22 0 0 0 chr11 37902826 37902848 -83941008 + AT_rich Low_complexity Low_complexity 1 22 0 5 874 234 0 0 0 chr11 37902928 37902954 -83940902 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 874 296 250 21 83 chr11 37903528 37903624 -83940232 + MTE-int LTR MaLR 1 90 -1490 5 874 356 374 58 40 chr11 37903662 37903988 -83939868 + MTE-int LTR MaLR 201 532 -1048 5 874 1628 189 84 6 chr11 37904240 37904596 -83939260 + ORR1C2 LTR MaLR 1 384 0 5 874 863 371 60 28 chr11 37904596 37905052 -83938804 + MTE-int LTR MaLR 852 1322 -258 5 874 585 247 95 40 chr11 37905052 37905359 -83938497 + ORR1E LTR MaLR 1 368 -2 5 874 255 306 107 48 chr11 37905924 37906092 -83937764 + MLT1F2 LTR MaLR 317 601 -53 5 874 21 36 0 0 chr11 37906306 37906334 -83937522 + AT_rich Low_complexity Low_complexity 1 28 0 5 874 440 345 147 46 chr11 37906434 37906802 -83937054 + MLT1A1 LTR MaLR 1 405 -3 5 874 998 202 185 154 chr11 37907599 37908113 -83935743 + MT2A LTR ERVL 1 530 -3 5 874 237 347 21 0 chr11 37909560 37909655 -83934201 + L3 LINE CR1 4073 4169 -320 5 874 194 344 42 0 chr11 37909718 37909814 -83934042 + L3 LINE CR1 4315 4414 -75 5 874 628 241 95 0 chr11 37910291 37910449 -83933407 + RMER15 LTR ERVL 403 575 0 5 874 234 245 0 0 chr11 37910538 37910591 -83933265 + L1VL2 LINE L1 521 573 -5762 5 874 19097 178 53 43 chr11 37910669 37911143 -83932713 + Lx2B LINE L1 1545 2071 -3815 5 874 216 0 0 0 chr11 37911143 37911167 -83932689 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 874 19097 178 53 43 chr11 37911167 37913544 -83930312 + Lx2B LINE L1 2072 4522 -1364 5 874 1156 75 0 0 chr11 37913544 37913690 -83930166 + B1_Mm SINE Alu 2 147 0 5 874 19097 178 53 43 chr11 37913690 37914621 -83929235 + Lx2B LINE L1 4523 5379 -507 5 874 3176 55 5 5 chr11 37914621 37915024 -83928832 - L1_Mus1 LINE L1 0 6567 6165 5 874 19097 156 39 17 chr11 37915024 37916623 -83927233 + Lx2B LINE L1 5380 7000 0 5 874 387 0 0 0 chr11 37916946 37916989 -83926867 + (TCTCC)n Simple_repeat Simple_repeat 1 43 0 6 874 1340 65 9 5 chr11 37916991 37917214 -83926642 + (TCCCC)n Simple_repeat Simple_repeat 1 224 0 6 874 759 203 7 26 chr11 37917220 37917372 -83926484 - B1_Mur3 SINE Alu 0 149 1 6 874 23 54 0 0 chr11 37917430 37917467 -83926389 + AT_rich Low_complexity Low_complexity 1 37 0 6 874 620 342 17 21 chr11 37918167 37918454 -83925402 + L1MC LINE L1 5464 5749 -2133 6 874 198 0 0 0 chr11 37918583 37918605 -83925251 + (T)n Simple_repeat Simple_repeat 1 22 0 6 874 685 98 10 19 chr11 37918605 37918709 -83925147 - B1_Mus2 SINE Alu 0 147 45 6 874 21 57 0 0 chr11 37919134 37919169 -83924687 + AT_rich Low_complexity Low_complexity 1 35 0 6 874 964 79 50 0 chr11 37919322 37919461 -83924395 - L1_Mus2 LINE L1 -1 6565 6420 6 874 282 95 47 16 chr11 37919633 37919697 -83924159 + A-rich Low_complexity Low_complexity 5 70 0 6 874 1219 329 43 0 chr11 37920146 37920611 -83923245 + Lx8 LINE L1 6804 7288 -185 6 874 359 250 70 26 chr11 37920849 37920964 -83922892 - Lx7 LINE L1 -18 7678 7559 6 874 189 154 0 0 chr11 37921069 37921108 -83922748 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 6 874 458 186 0 89 chr11 37921109 37921233 -83922623 - Lx7 LINE L1 -334 7362 7250 6 874 297 239 56 64 chr11 37921252 37921377 -83922479 + L1MC4 LINE L1 7550 7673 -369 6 874 207 0 0 0 chr11 37921741 37921764 -83922092 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 874 356 59 0 19 chr11 37922065 37922117 -83921739 + (TTA)n Simple_repeat Simple_repeat 2 52 0 6 874 1020 153 10 20 chr11 37922730 37922930 -83920926 - Lx2 LINE L1 -47 6950 6753 6 874 324 0 0 0 chr11 37923541 37923577 -83920279 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 874 343 276 44 15 chr11 37924700 37924836 -83919020 + MLT2B4 LTR ERVL 2 141 -415 6 874 565 317 83 52 chr11 37925506 37925673 -83918183 + L1M3 LINE L1 3610 3794 -2346 6 874 411 98 0 0 chr11 37925673 37925734 -83918122 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 874 565 308 84 84 chr11 37925734 37927159 -83916697 + L1M3 LINE L1 3789 5205 -938 6 874 359 280 96 83 chr11 37927212 37927368 -83916488 - MTD LTR MaLR -41 378 221 6 874 637 167 21 4 chr11 37928475 37928710 -83915146 + (CAGAGA)n Simple_repeat Simple_repeat 1 239 0 6 874 337 238 28 19 chr11 37930262 37930369 -83913487 + MER34 LTR ERV1 432 539 -3 6 874 273 98 0 0 chr11 37930759 37930800 -83913056 + (ATG)n Simple_repeat Simple_repeat 2 42 0 6 874 294 291 19 19 chr11 37931838 37931943 -83911913 - B3A SINE B2 -84 114 10 6 874 344 330 59 77 chr11 37933320 37933604 -83910252 - B4 SINE B4 0 292 1 6 874 22 35 0 0 chr11 37933705 37933734 -83910122 + AT_rich Low_complexity Low_complexity 1 29 0 6 874 426 20 0 0 chr11 37935208 37935259 -83908597 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 874 337 292 147 26 chr11 37935284 37935400 -83908456 - RSINE1 SINE B4 -33 132 3 6 874 217 158 0 26 chr11 37935430 37935469 -83908387 + CT-rich Low_complexity Low_complexity 3 40 0 6 874 315 0 0 0 chr11 37935583 37935618 -83908238 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 6 874 216 263 46 92 chr11 37935636 37935745 -83908111 - B1F2 SINE Alu -41 108 5 6 874 974 172 0 22 chr11 37936477 37936750 -83907106 + CT-rich Low_complexity Low_complexity 1 266 0 6 874 247 294 115 64 chr11 37938074 37938230 -83905626 - Charlie26a DNA MER1_type -158 167 4 6 874 1909 149 35 0 chr11 37938534 37938850 -83905006 + ORR1A2 LTR MaLR 1 327 0 6 874 432 0 0 0 chr11 37940512 37940560 -83903296 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 874 212 167 21 0 chr11 37940709 37940757 -83903099 + GA-rich Low_complexity Low_complexity 3 51 0 6 874 498 335 48 22 chr11 37941629 37941858 -83901998 + MER44D DNA MER2_type 1 235 -470 6 874 24 0 0 0 chr11 37941875 37941899 -83901957 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 409 248 93 121 chr11 37941952 37942241 -83901615 + MER44D DNA MER2_type 415 695 -10 6 874 193 370 9 44 chr11 37943644 37943757 -83900099 - L2 LINE L2 -664 2755 2647 6 874 270 358 56 6 chr11 37944467 37944627 -83899229 - L2 LINE L2 -1813 1606 1439 6 874 558 309 60 35 chr11 37944697 37944898 -83898958 - B3 SINE B2 0 216 11 6 874 415 381 116 32 chr11 37944918 37945610 -83898246 - L2 LINE L2 -2096 1323 574 6 874 527 331 67 6 chr11 37946566 37946730 -83897126 + B3A SINE B2 2 175 -23 6 874 3014 162 4 6 chr11 37947953 37948482 -83895374 - L1_Mur2 LINE L1 -447 5430 4903 6 874 1636 214 40 17 chr11 37948481 37948947 -83894909 + Lx4B LINE L1 6492 6978 -22 6 874 366 91 0 0 chr11 37949747 37949802 -83894054 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 874 238 299 0 15 chr11 37950044 37950112 -83893744 + T-rich Low_complexity Low_complexity 2 68 0 6 874 264 355 124 7 chr11 37950164 37950317 -83893539 + LTR85c LTR Gypsy? 111 281 -542 6 874 284 318 106 39 chr11 37950762 37950942 -83892914 + MER67D LTR ERV1 70 261 -253 6 874 311 351 70 23 chr11 37953339 37953511 -83890345 + MLT1J2 LTR MaLR 60 239 -209 6 874 581 222 0 0 chr11 37953708 37953816 -83890040 - PB1D9 SINE Alu 0 120 13 6 874 803 330 43 32 chr11 37954309 37954591 -83889265 + MER70B LTR ERVL 104 388 -190 6 874 789 11 0 0 chr11 37954977 37955067 -83888789 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 874 261 0 0 0 chr11 37955067 37955095 -83888761 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 874 180 208 0 94 chr11 37955293 37955346 -83888510 - L3 LINE CR1 -3721 768 721 6 874 342 0 0 0 chr11 37956432 37956470 -83887386 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 874 236 30 30 0 chr11 37956474 37956507 -83887349 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 874 200 111 28 0 chr11 37956507 37956543 -83887313 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 874 273 119 0 0 chr11 37957394 37957436 -83886420 + (TCC)n Simple_repeat Simple_repeat 1 42 0 6 874 940 267 2 163 chr11 37957840 37958270 -83885586 + MTE2a LTR MaLR 5 365 -14 6 874 276 30 0 0 chr11 37958492 37958525 -83885331 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 874 251 175 0 17 chr11 37958895 37958953 -83884903 + CT-rich Low_complexity Low_complexity 2 58 0 6 874 1651 249 8 14 chr11 37959794 37960165 -83883691 + ORR1D1 LTR MaLR 6 374 0 6 874 1995 137 3 0 chr11 37960517 37960838 -83883018 + ORR1A2 LTR MaLR 1 322 -5 6 874 270 0 0 0 chr11 37961066 37961096 -83882760 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 874 574 189 128 0 chr11 37961722 37961805 -83882051 + Lx9 LINE L1 7420 7515 -129 6 874 396 0 0 0 chr11 37961805 37961849 -83882007 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 874 574 189 128 0 chr11 37961849 37961961 -83881895 + Lx9 LINE L1 7516 7639 -5 6 874 21 36 0 0 chr11 37962619 37962647 -83881209 + AT_rich Low_complexity Low_complexity 1 28 0 6 874 913 57 0 0 chr11 37962807 37962930 -83880926 + L1Md_T LINE L1 6460 6582 0 6 874 1255 293 68 8 chr11 37963138 37963533 -83880323 + MTD LTR MaLR 1 419 0 6 874 244 265 12 35 chr11 37964937 37965023 -83878833 + GA-rich Low_complexity Low_complexity 3 86 0 6 874 405 0 0 0 chr11 37965522 37965567 -83878289 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 874 24 0 0 0 chr11 37966013 37966037 -83877819 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 321 294 56 62 chr11 37966218 37966376 -83877480 + MER58C DNA MER1_type 1 167 -174 6 874 327 25 0 0 chr11 37966713 37966753 -83877103 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 874 318 312 110 51 chr11 37967116 37967234 -83876622 + RSINE1 SINE B4 37 161 -4 6 874 21 0 0 0 chr11 37967262 37967283 -83876573 + AT_rich Low_complexity Low_complexity 1 21 0 6 874 198 0 0 0 chr11 37967403 37967425 -83876431 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 874 640 250 12 82 chr11 37971202 37971372 -83872484 - B3A SINE B2 0 198 41 6 874 270 304 42 56 chr11 37971339 37971482 -83872374 + ORR1E LTR MaLR 40 180 -179 6 874 682 274 6 0 chr11 37971880 37972037 -83871819 + B3A SINE B2 3 160 -38 6 874 282 125 0 0 chr11 37972492 37972540 -83871316 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 874 4670 177 41 22 chr11 37973007 37974013 -83869843 + Lx3C LINE L1 5950 6974 -2 6 874 405 0 0 0 chr11 37974108 37974153 -83869703 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 874 2399 88 28 3 chr11 37974291 37974644 -83869212 - L1_Mus4 LINE L1 0 6636 6275 6 874 502 342 39 0 chr11 37974656 37974811 -83869045 - RSINE1 SINE B4 -2 163 3 6 874 29 47 0 0 chr11 37974815 37974858 -83868998 + AT_rich Low_complexity Low_complexity 1 43 0 6 874 20686 30 1 0 chr11 37975445 37977936 -83865920 + L1Md_F2 LINE L1 3095 5586 -297 6 874 8082 40 3 2 chr11 37977936 37978919 -83864937 + L1Md_F2 LINE L1 5587 6570 -12 6 874 390 99 24 24 chr11 37979017 37979100 -83864756 + (TATG)n Simple_repeat Simple_repeat 1 83 0 6 874 351 313 23 83 chr11 37979100 37979316 -83864540 - B3 SINE B2 -11 205 3 6 874 477 0 0 0 chr11 37980241 37980294 -83863562 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 874 748 186 27 27 chr11 37980644 37980793 -83863063 - B1_Mur3 SINE Alu 0 149 1 6 874 420 394 29 5 chr11 37981979 37982183 -83861673 - B3 SINE B2 -7 209 1 6 874 358 217 0 0 chr11 37982354 37982423 -83861433 - U1 snRNA snRNA -91 74 6 6 874 3067 127 0 21 chr11 37982423 37982905 -83860951 + Lx LINE L1 6157 6628 -26 6 874 1085 96 4 7 chr11 37982905 37983179 -83860677 + (GA)n Simple_repeat Simple_repeat 1 273 0 6 874 270 278 56 0 chr11 37985178 37985250 -83858606 - Tigger9a DNA Tigger -654 78 3 6 874 303 298 56 37 chr11 37985645 37985753 -83858103 - PB1D10 SINE Alu -5 112 3 6 874 303 122 0 0 chr11 37986309 37986358 -83857498 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 874 348 200 320 6 chr11 37986365 37986521 -83857335 + B3 SINE B2 1 205 -11 6 874 22 56 0 0 chr11 37986895 37986931 -83856925 + AT_rich Low_complexity Low_complexity 1 36 0 7 874 2731 140 2 40 chr11 37987051 37987548 -83856308 - Lx2 LINE L1 -4 6993 6516 7 874 781 259 81 65 chr11 37988167 37988538 -83855318 - MTEa LTR MaLR 0 379 3 7 874 21 36 0 0 chr11 37988824 37988852 -83855004 + AT_rich Low_complexity Low_complexity 1 28 0 7 874 623 224 6 0 chr11 37989545 37989724 -83854132 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 874 21 0 0 0 chr11 37990161 37990182 -83853674 + AT_rich Low_complexity Low_complexity 1 21 0 7 874 21 0 0 0 chr11 37990375 37990396 -83853460 + AT_rich Low_complexity Low_complexity 1 21 0 7 874 243 277 57 97 chr11 37992164 37992340 -83851516 + Charlie8 DNA MER1_type 56 224 -2204 7 874 213 132 0 0 chr11 37992750 37992788 -83851068 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 874 33 0 0 0 chr11 37993392 37993425 -83850431 + AT_rich Low_complexity Low_complexity 1 33 0 7 874 3701 14 121 0 chr11 37994861 37995301 -83848555 + MT2_Mm LTR ERVL 1 493 0 7 874 251 184 0 0 chr11 37995755 37995804 -83848052 + AmnSINE1 SINE SINE 510 558 -17 7 874 227 303 29 29 chr11 37997396 37997464 -83846392 + L2 LINE L2 2821 2888 -531 7 874 595 200 70 0 chr11 37997492 37997607 -83846249 - MIRb SINE MIR -23 245 123 7 874 282 302 91 28 chr11 37997703 37997846 -83846010 + MIRc SINE MIR 63 214 -54 7 874 1020 156 0 36 chr11 37999579 37999772 -83844084 + Lx2 LINE L1 6812 6997 0 7 874 22 0 0 0 chr11 38000577 38000599 -83843257 + AT_rich Low_complexity Low_complexity 1 22 0 1 874 582 167 0 0 chr11 38000804 38000912 -83842944 + (CA)n Simple_repeat Simple_repeat 2 109 0 2 874 1142 180 4 35 chr11 38001134 38001364 -83842492 - URR1B DNA MER1_type -1 224 2 3 874 27 49 0 0 chr11 38004418 38004459 -83839397 + AT_rich Low_complexity Low_complexity 1 41 0 4 874 879 37 0 0 chr11 38005267 38005374 -83838482 + (TC)n Simple_repeat Simple_repeat 2 108 0 5 874 824 25 34 0 chr11 38005374 38005492 -83838364 + (TG)n Simple_repeat Simple_repeat 2 124 0 6 874 305 182 40 0 chr11 38008124 38008223 -83835633 + (TA)n Simple_repeat Simple_repeat 2 104 0 7 874 21 36 0 0 chr11 38008234 38008262 -83835594 + AT_rich Low_complexity Low_complexity 1 28 0 8 874 208 351 117 0 chr11 38008365 38008459 -83835397 - L2b LINE L2 -6 3369 3265 9 874 22 0 0 0 chr11 38008927 38008949 -83834907 + AT_rich Low_complexity Low_complexity 1 22 0 1 874 521 319 28 0 chr11 38009100 38009282 -83834574 + MER34 LTR ERV1 33 219 -323 1 874 394 357 48 30 chr11 38009295 38009526 -83834330 + MER34 LTR ERV1 278 512 -30 1 874 248 248 160 17 chr11 38009531 38009650 -83834206 - MLT1A1 LTR MaLR -2 406 271 1 874 203 133 24 107 chr11 38009673 38009757 -83834099 + A-rich Low_complexity Low_complexity 2 78 0 1 109 12536 24 0 0 chr11 38009884 38012032 -83831824 - L1Md_A LINE L1 0 6582 4435 1 875 29 28 0 0 chr11 38012303 38012339 -83831517 + AT_rich Low_complexity Low_complexity 1 36 0 1 875 790 287 10 19 chr11 38013762 38013968 -83829888 + B3 SINE B2 1 204 -12 1 875 450 293 10 0 chr11 38014195 38014294 -83829562 + B1_Mus2 SINE Alu 2 101 -46 1 875 283 215 35 71 chr11 38014241 38014326 -83829530 + RLTR25B LTR ERVK 451 532 -496 1 875 647 304 148 30 chr11 38015148 38015480 -83828376 + Lx8 LINE L1 7033 7403 -70 1 875 2921 252 103 18 chr11 38015489 38016291 -83827565 - Lx7 LINE L1 -443 7253 6383 2 875 285 75 0 0 chr11 38019201 38019241 -83824615 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 875 492 18 0 0 chr11 38019342 38019399 -83824457 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 875 1723 239 34 5 chr11 38019604 38020011 -83823845 + MTD LTR MaLR 1 419 0 2 875 257 39 0 73 chr11 38020640 38020695 -83823161 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 2 875 532 229 36 58 chr11 38020717 38020856 -83823000 + B1_Mur3 SINE Alu 13 148 -1 2 875 949 220 76 27 chr11 38021447 38021709 -83822147 + Lx7 LINE L1 6950 7224 -472 2 875 355 230 0 26 chr11 38022229 38022305 -83821551 + Lx7 LINE L1 7224 7297 -399 2 875 657 0 0 0 chr11 38022320 38022393 -83821463 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 2 875 33438 81 5 9 chr11 38022432 38028469 -83815387 - L1Md_F2 LINE L1 -12 6570 561 2 875 235 267 0 0 chr11 38028555 38028630 -83815226 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 2 875 1474 136 92 15 chr11 38028685 38028947 -83814909 + ORR1A3 LTR MaLR 45 326 0 3 875 480 18 0 0 chr11 38029100 38029157 -83814699 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 875 403 248 0 114 chr11 38029828 38029849 -83814007 + MT2B LTR ERVL 149 155 -446 3 875 751 158 44 48 chr11 38029849 38030008 -83813848 + B1_Mus2 SINE Alu 1 292 -19 3 875 441 0 0 0 chr11 38030054 38030103 -83813753 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 875 1591 236 96 13 chr11 38031298 38031684 -83812172 - MTC LTR MaLR -3 418 1 3 875 201 232 0 0 chr11 38033314 38033383 -83810473 + (TGG)n Simple_repeat Simple_repeat 1 69 0 3 875 202 312 0 0 chr11 38033399 38033463 -83810393 + (TGG)n Simple_repeat Simple_repeat 2 65 0 3 875 3562 103 31 22 chr11 38033511 38034094 -83809762 + RLTR19-int LTR ERVK 1429 2016 -4121 3 875 474 338 72 18 chr11 38034129 38034406 -83809450 - Lx9 LINE L1 -297 7347 7056 3 875 273 119 0 0 chr11 38034443 38034485 -83809371 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 875 25 31 0 0 chr11 38034635 38034667 -83809189 + AT_rich Low_complexity Low_complexity 1 32 0 4 875 623 67 11 0 chr11 38035116 38035205 -83808651 + (TTCTC)n Simple_repeat Simple_repeat 1 90 0 4 875 204 0 26 53 chr11 38035205 38035243 -83808613 + (TTC)n Simple_repeat Simple_repeat 2 38 0 4 875 870 119 0 0 chr11 38035245 38035379 -83808477 + (TCC)n Simple_repeat Simple_repeat 3 136 0 4 875 476 331 17 81 chr11 38035627 38035801 -83808055 + RSINE1 SINE B4 3 165 0 4 875 1873 241 30 0 chr11 38036710 38037108 -83806748 + Lx6 LINE L1 7047 7456 -4 4 875 485 283 134 74 chr11 38037123 38037584 -83806272 - Cheshire DNA MER1_type -260 2160 1672 4 875 281 308 69 36 chr11 38039000 38039196 -83804660 - MLT1A LTR MaLR 0 374 189 4 875 221 57 29 0 chr11 38039277 38039312 -83804544 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 875 263 140 20 0 chr11 38039627 38039677 -83804179 + GA-rich Low_complexity Low_complexity 4 54 0 4 875 592 319 116 35 chr11 38039678 38040344 -83803512 + L1M4 LINE L1 2312 3031 -3115 5 875 3278 38 5 2 chr11 38040400 38040795 -83803061 - MTA_Mm LTR MaLR 0 396 1 5 875 1076 310 133 31 chr11 38041143 38041894 -83801962 + Lx8 LINE L1 6195 7173 -300 5 875 398 226 9 0 chr11 38042169 38042275 -83801581 + (TATATG)n Simple_repeat Simple_repeat 6 112 0 5 875 21 36 0 0 chr11 38042959 38042987 -83800869 + AT_rich Low_complexity Low_complexity 1 28 0 5 875 203 114 23 0 chr11 38043358 38043402 -83800454 + (TTTTTG)n Simple_repeat Simple_repeat 6 50 0 5 875 4416 107 1 25 chr11 38043471 38044141 -83799715 - L1Md_F2 LINE L1 -18 6564 5911 5 875 2670 53 0 0 chr11 38044141 38044482 -83799374 - ORR1A1-int LTR MaLR -1370 422 82 5 875 1989 42 0 0 chr11 38045169 38045408 -83798448 - L1Md_F2 LINE L1 -666 5916 5678 5 875 6814 68 0 5 chr11 38045412 38046296 -83797560 + L1Md_F2 LINE L1 4817 5696 -187 5 875 1069 90 7 0 chr11 38046997 38047142 -83796714 - B1_Mus2 SINE Alu 0 147 2 5 875 904 104 74 0 chr11 38047706 38047841 -83796015 - B1_Mus1 SINE Alu 0 148 4 5 875 669 110 0 0 chr11 38049896 38049996 -83793860 + (TC)n Simple_repeat Simple_repeat 1 100 0 6 875 514 124 20 10 chr11 38049999 38050097 -83793759 + (CATA)n Simple_repeat Simple_repeat 2 100 0 6 875 211 183 0 24 chr11 38050519 38050603 -83793253 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 875 240 59 0 0 chr11 38050887 38050921 -83792935 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 875 220 312 0 0 chr11 38051602 38051666 -83792190 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 875 21 71 0 0 chr11 38053358 38053400 -83790456 + AT_rich Low_complexity Low_complexity 1 42 0 6 875 261 0 0 0 chr11 38054714 38054743 -83789113 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 875 216 0 0 0 chr11 38055385 38055409 -83788447 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 875 380 280 84 71 chr11 38055868 38056097 -83787759 + MTEb LTR MaLR 37 267 -112 6 875 249 33 0 0 chr11 38056675 38056705 -83787151 + (A)n Simple_repeat Simple_repeat 1 30 0 6 875 330 251 161 126 chr11 38057556 38057779 -83786077 - Lx8 LINE L1 -254 7219 6989 7 875 499 63 26 66 chr11 38057779 38057882 -83785974 + CT-rich Low_complexity Low_complexity 55 147 0 7 875 1248 91 0 0 chr11 38057882 38058058 -83785798 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 7 875 499 63 26 66 chr11 38058058 38058106 -83785750 + polypyrimidine Low_complexity Low_complexity 3 54 0 7 875 1042 82 7 26 chr11 38058106 38058257 -83785599 - B1_Mus1 SINE Alu 0 148 1 7 875 253 315 54 0 chr11 38058257 38058368 -83785488 - Lx8 LINE L1 -471 7002 6886 7 875 1041 339 78 17 chr11 38058638 38059161 -83784695 - Lx9 LINE L1 -728 6916 6362 7 875 906 290 121 38 chr11 38059213 38059683 -83784173 + Lx9 LINE L1 7058 7566 -78 7 875 1249 193 0 9 chr11 38059689 38059914 -83783942 + URR1B DNA MER1_type 1 223 -2 7 875 229 302 0 0 chr11 38060285 38060338 -83783518 - ID4_ SINE ID -20 63 11 7 875 37822 31 1 0 chr11 38060599 38067658 -83776198 - L1Md_T LINE L1 0 6585 1 7 875 375 333 108 39 chr11 38067777 38068192 -83775664 - L1MEd LINE L1 -5051 1068 625 8 875 297 268 35 26 chr11 38068967 38069082 -83774774 - L1M5 LINE L1 -350 5774 5659 8 875 612 266 114 47 chr11 38070462 38070655 -83773201 + B3 SINE B2 1 206 -10 8 875 24 32 0 0 chr11 38070679 38070710 -83773146 + AT_rich Low_complexity Low_complexity 1 31 0 8 875 504 294 168 39 chr11 38071372 38071735 -83772121 - MLT2D LTR ERVL 0 414 5 8 875 1124 90 0 31 chr11 38071819 38072104 -83771752 + (TTTC)n Simple_repeat Simple_repeat 1 276 0 8 875 375 302 85 61 chr11 38072161 38072401 -83771455 - B4 SINE B4 -46 246 1 8 875 232 348 25 74 chr11 38072937 38073058 -83770798 - PB1D10 SINE Alu -1 116 2 8 875 318 386 24 18 chr11 38073197 38073366 -83770490 + MIRb SINE MIR 88 257 -11 8 875 551 210 83 8 chr11 38073420 38073540 -83770316 - B1_Mur3 SINE Alu 0 149 21 8 875 423 98 0 0 chr11 38073945 38074006 -83769850 + (TA)n Simple_repeat Simple_repeat 1 61 0 9 875 240 315 53 18 chr11 38074145 38074258 -83769598 - MLT1A LTR MaLR 0 374 258 9 875 1977 201 0 30 chr11 38074475 38074870 -83768986 + MTC LTR MaLR 4 386 -35 9 875 785 341 29 44 chr11 38074869 38075142 -83768714 - MTE2b LTR MaLR -68 311 43 9 875 280 227 60 15 chr11 38075144 38075211 -83768645 - MTE2b LTR MaLR -305 74 5 9 875 27 73 0 0 chr11 38075586 38075641 -83768215 + AT_rich Low_complexity Low_complexity 1 55 0 9 875 192 77 0 0 chr11 38075753 38075779 -83768077 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 875 305 59 39 0 chr11 38075779 38075830 -83768026 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 9 875 3858 217 65 18 chr11 38076237 38077089 -83766767 + Lx5 LINE L1 6147 7038 -12 9 875 365 344 46 15 chr11 38077475 38077605 -83766251 + B1F SINE Alu 9 142 -7 9 875 351 0 0 0 chr11 38077633 38077672 -83766184 + (CAA)n Simple_repeat Simple_repeat 1 39 0 9 875 21 36 0 0 chr11 38078102 38078130 -83765726 + AT_rich Low_complexity Low_complexity 1 28 0 1 875 352 323 16 16 chr11 38078169 38078298 -83765558 + MER5A1 DNA MER1_type 1 129 -37 1 875 22 56 0 0 chr11 38078967 38079003 -83764853 + AT_rich Low_complexity Low_complexity 1 36 0 1 875 751 283 17 0 chr11 38079776 38080006 -83763850 - Lx9 LINE L1 -223 7421 7188 1 875 9758 92 12 2 chr11 38080025 38082142 -83761714 - L1_Mus1 LINE L1 -1 6566 4440 1 875 2018 253 52 30 chr11 38082144 38082736 -83761120 - Lx9 LINE L1 -444 7200 6596 1 875 212 329 77 65 chr11 38082957 38083204 -83760652 + L2 LINE L2 2574 2823 -596 1 875 202 191 24 0 chr11 38083685 38083727 -83760129 + L2a LINE L2 3384 3426 0 1 875 905 337 81 28 chr11 38085794 38086362 -83757494 + Lx7 LINE L1 6722 7319 -377 1 875 21 36 0 0 chr11 38086526 38086554 -83757302 + AT_rich Low_complexity Low_complexity 1 28 0 1 875 480 281 20 51 chr11 38086862 38087057 -83756799 - LFSINE_Vert SINE SINE -248 211 23 1 875 378 0 0 0 chr11 38088150 38088192 -83755664 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 875 4435 158 23 58 chr11 38088749 38089621 -83754235 + Lx3C LINE L1 6129 6969 -7 1 875 222 397 0 25 chr11 38089658 38089738 -83754118 + RSINE1 SINE B4 88 165 0 1 875 306 0 0 0 chr11 38089766 38089800 -83754056 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1 875 534 335 47 24 chr11 38092328 38092539 -83751317 - B3A SINE B2 0 216 1 1 875 483 349 135 66 chr11 38092961 38093449 -83750407 + MLT1F2 LTR MaLR 27 548 0 1 875 393 22 0 0 chr11 38094234 38094280 -83749576 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 875 235 358 98 43 chr11 38094449 38094633 -83749223 - MIRb SINE MIR -66 202 9 1 875 327 49 0 0 chr11 38095408 38095449 -83748407 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1 875 544 347 53 95 chr11 38098883 38099240 -83744616 - MLT1D LTR MaLR -9 496 155 1 875 234 0 0 0 chr11 38100136 38100162 -83743694 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 875 360 286 110 66 chr11 38101446 38101827 -83742029 + L1MD LINE L1 3525 3922 -2224 1 875 220 239 73 15 chr11 38101869 38101937 -83741919 + B1F1 SINE Alu 5 76 -73 1 875 531 0 0 0 chr11 38101988 38102047 -83741809 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 875 243 0 0 0 chr11 38102047 38102073 -83741783 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 875 313 88 0 50 chr11 38102312 38102372 -83741484 + (TCTCCC)n Simple_repeat Simple_repeat 3 59 0 1 875 22 35 0 0 chr11 38102374 38102403 -83741453 + AT_rich Low_complexity Low_complexity 1 29 0 1 875 377 230 46 74 chr11 38103187 38103295 -83740561 + MT2B LTR ERVL 153 257 -344 1 875 703 127 16 41 chr11 38103210 38103333 -83740523 + B1_Mus1 SINE Alu 18 137 -11 1 875 261 0 0 0 chr11 38103333 38103362 -83740494 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 875 354 378 46 11 chr11 38103630 38103999 -83739857 + L1MC LINE L1 5318 5699 -2183 1 875 23 0 0 0 chr11 38105070 38105093 -83738763 + AT_rich Low_complexity Low_complexity 1 23 0 1 875 304 320 32 25 chr11 38105122 38105278 -83738578 + Lx8 LINE L1 7118 7270 -426 1 875 369 0 0 0 chr11 38105592 38105633 -83738223 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 875 387 0 0 0 chr11 38105650 38105693 -83738163 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 875 306 0 0 0 chr11 38107142 38107176 -83736680 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 875 302 330 106 9 chr11 38107202 38107315 -83736541 - RSINE1 SINE B4 -31 134 11 1 875 363 101 67 0 chr11 38107319 38107408 -83736448 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 1 875 361 325 26 9 chr11 38107969 38108084 -83735772 + ID_B1 SINE B4 107 223 -1 1 875 288 200 0 0 chr11 38109350 38109420 -83734436 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 875 224 274 226 0 chr11 38109521 38109605 -83734251 - B1_Mur4 SINE Alu 0 150 48 1 875 23 33 0 0 chr11 38110416 38110446 -83733410 + AT_rich Low_complexity Low_complexity 1 30 0 1 875 424 266 94 72 chr11 38111191 38111329 -83732527 - B1_Mur1 SINE Alu -7 142 2 1 875 536 275 209 26 chr11 38111882 38112179 -83731677 - ORR1D1 LTR MaLR -8 362 3 1 875 1559 37 16 0 chr11 38112724 38112912 -83730944 - B2_Mm1a SINE B2 0 193 3 1 875 3899 68 2 8 chr11 38113034 38113549 -83730307 - L1Md_F2 LINE L1 -12 6570 6059 1 875 21 57 0 0 chr11 38113812 38113847 -83730009 + AT_rich Low_complexity Low_complexity 1 35 0 1 875 213 39 0 0 chr11 38115627 38115653 -83728203 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 1 875 661 242 197 40 chr11 38116814 38117059 -83726797 + MTC LTR MaLR 9 283 -136 1 875 4626 120 38 13 chr11 38117059 38117805 -83726051 + Lx2 LINE L1 6234 6997 0 1 875 606 273 154 96 chr11 38117805 38117851 -83726005 + MTC LTR MaLR 284 317 -102 1 875 258 136 0 0 chr11 38117926 38117970 -83725886 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 875 437 273 84 42 chr11 38118628 38118819 -83725037 + RLTR11A2 LTR ERVK 1 199 -328 1 875 371 21 0 20 chr11 38120118 38120167 -83723689 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 875 416 161 12 0 chr11 38120287 38120368 -83723488 + CT-rich Low_complexity Low_complexity 1 82 0 1 875 207 0 0 0 chr11 38121865 38121888 -83721968 + (A)n Simple_repeat Simple_repeat 1 23 0 1 875 213 344 40 24 chr11 38122412 38122537 -83721319 + MIR SINE MIR 71 197 -65 1 875 23 54 0 0 chr11 38122778 38122815 -83721041 + AT_rich Low_complexity Low_complexity 1 37 0 1 875 575 244 5 43 chr11 38123922 38124106 -83719750 - B2_Mm2 SINE B2 -17 178 2 1 875 573 28 0 0 chr11 38124204 38124275 -83719581 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 875 1187 314 98 79 chr11 38124340 38125007 -83718849 + MTE-int LTR MaLR 848 1527 -53 1 875 246 262 25 101 chr11 38125007 38125126 -83718730 + ORR1D1 LTR MaLR 1 110 -264 1 875 381 198 0 0 chr11 38125182 38125273 -83718583 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 875 297 0 0 0 chr11 38125395 38125428 -83718428 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1 875 1928 111 21 0 chr11 38125428 38125717 -83718139 - L1_Mus2 LINE L1 -16 6550 6256 1 875 1990 75 22 0 chr11 38125717 38125985 -83717871 + L1_Mus2 LINE L1 5882 6155 -411 1 875 738 318 146 22 chr11 38126394 38126633 -83717223 - Lx8 LINE L1 0 7473 7203 1 875 2065 214 67 0 chr11 38126633 38127128 -83716728 + RLTR11A LTR ERVK 1 528 0 1 875 738 318 146 22 chr11 38127128 38127332 -83716524 - Lx8 LINE L1 -271 7202 6975 1 875 587 313 104 4 chr11 38128373 38128604 -83715252 - MLT2C2 LTR ERVL -182 282 29 1 875 776 80 9 0 chr11 38128683 38128796 -83715060 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 1 875 273 29 0 0 chr11 38129320 38129354 -83714502 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 875 26 30 0 0 chr11 38129750 38129783 -83714073 + AT_rich Low_complexity Low_complexity 1 33 0 1 875 185 372 21 11 chr11 38131592 38131687 -83712169 + L2 LINE L2 2214 2309 -1110 1 875 24 53 0 0 chr11 38132321 38132359 -83711497 + AT_rich Low_complexity Low_complexity 1 38 0 1 875 198 207 0 0 chr11 38135496 38135554 -83708302 + GA-rich Low_complexity Low_complexity 1 58 0 1 875 1201 56 0 22 chr11 38135563 38135744 -83708112 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 1 875 244 299 82 130 chr11 38135751 38136043 -83707813 - MLT2B4 LTR ERVL -6 408 131 1 875 2498 56 0 0 chr11 38136119 38136440 -83707416 + L1Md_F2 LINE L1 6262 6582 0 1 875 289 294 34 68 chr11 38136463 38136486 -83707370 - MLT2B4 LTR ERVL -442 114 94 1 875 1851 218 78 22 chr11 38136486 38136983 -83706873 + RLTR11A2 LTR ERVK 1 525 -2 1 875 289 294 34 68 chr11 38136983 38137076 -83706780 - MLT2B4 LTR ERVL -463 93 2 1 875 313 362 47 18 chr11 38137305 38137522 -83706334 - MLT2B4 LTR ERVL -6 550 251 1 875 1392 81 11 0 chr11 38138553 38138738 -83705118 - B2_Mm2 SINE B2 -7 188 2 1 875 235 341 85 23 chr11 38138813 38138942 -83704914 + MIR SINE MIR 15 151 -111 1 875 316 89 0 72 chr11 38138989 38139086 -83704770 + (TTTG)n Simple_repeat Simple_repeat 4 93 0 1 875 1070 90 0 0 chr11 38139086 38139231 -83704625 - B1_Mus2 SINE Alu 0 147 3 1 875 486 0 0 0 chr11 38139264 38139318 -83704538 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 875 222 350 31 47 chr11 38139389 38139518 -83704338 - B1_Mus1 SINE Alu -13 135 9 1 875 299 385 0 0 chr11 38139410 38139519 -83704337 - ID_B1 SINE B4 -25 199 91 1 875 210 191 0 0 chr11 38139627 38139674 -83704182 + GA-rich Low_complexity Low_complexity 2 48 0 1 875 228 111 0 0 chr11 38139878 38139914 -83703942 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 875 362 60 0 0 chr11 38139914 38139964 -83703892 - B1_Mm SINE Alu 0 147 98 1 875 342 303 101 0 chr11 38140170 38140269 -83703587 + RSINE1 SINE B4 55 163 -2 1 875 21 36 0 0 chr11 38140269 38140297 -83703559 + AT_rich Low_complexity Low_complexity 1 28 0 1 875 21 0 0 0 chr11 38140808 38140829 -83703027 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 522 0 0 0 chr11 38141323 38141381 -83702475 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 875 189 175 0 0 chr11 38141381 38141421 -83702435 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 875 234 320 76 93 chr11 38141519 38141691 -83702165 - B4A SINE B4 -123 169 1 1 876 743 104 0 9 chr11 38142423 38142539 -83701317 + (TTCC)n Simple_repeat Simple_repeat 1 115 0 1 876 342 0 0 0 chr11 38142596 38142634 -83701222 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 1 876 231 362 60 8 chr11 38144038 38144155 -83699701 - MER20 DNA MER1_type -48 171 49 1 876 396 0 0 0 chr11 38144258 38144302 -83699554 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 876 353 344 6 61 chr11 38144308 38144472 -83699384 + RSINE1 SINE B4 2 156 -9 1 876 477 0 0 0 chr11 38144473 38144526 -83699330 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 876 378 0 0 0 chr11 38144526 38144567 -83699289 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 876 400 283 86 11 chr11 38144593 38144779 -83699077 + Lx8 LINE L1 5627 5826 -21 2 876 757 311 142 0 chr11 38144816 38145141 -83698715 + Lx8 LINE L1 6201 6571 -902 2 876 263 226 172 35 chr11 38145166 38145253 -83698603 + PB1D9 SINE Alu 1 99 -21 2 876 291 28 0 0 chr11 38145262 38145298 -83698558 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 876 1169 217 130 74 chr11 38145300 38145638 -83698218 + ORR1B2 LTR MaLR 3 359 -8 2 876 351 317 10 0 chr11 38145686 38145790 -83698066 - Lx8 LINE L1 -713 6760 6656 2 876 479 17 17 0 chr11 38145823 38145883 -83697973 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2 876 230 386 43 31 chr11 38146234 38146397 -83697459 - MER5B DNA MER1_type -12 166 2 2 876 599 172 31 15 chr11 38146528 38146658 -83697198 + Lx3B LINE L1 6790 6921 -52 2 876 38 51 0 0 chr11 38146739 38146798 -83697058 + AT_rich Low_complexity Low_complexity 1 59 0 2 876 228 119 33 17 chr11 38147538 38147598 -83696258 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 876 23 0 0 0 chr11 38148521 38148544 -83695312 + AT_rich Low_complexity Low_complexity 1 23 0 2 876 22 0 0 0 chr11 38148701 38148723 -83695133 + AT_rich Low_complexity Low_complexity 1 22 0 2 876 227 374 90 22 chr11 38150471 38150605 -83693251 + MLT1I LTR MaLR 128 270 -141 2 876 473 316 88 22 chr11 38151066 38151247 -83692609 + B3A SINE B2 1 193 -5 2 876 3345 176 73 13 chr11 38151528 38152237 -83691619 - RMER6A LTR ERVK -3 753 2 2 876 502 333 107 51 chr11 38153154 38153527 -83690329 + Tigger7 DNA MER2_type 8 401 -2090 2 876 251 363 128 18 chr11 38153547 38153766 -83690090 + Tigger7 DNA MER2_type 2250 2491 0 2 876 201 233 0 0 chr11 38154200 38154243 -83689613 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 876 390 186 0 0 chr11 38154273 38154359 -83689497 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 876 5207 126 0 11 chr11 38154460 38155249 -83688607 + Lx2 LINE L1 6218 6997 0 2 876 2326 177 88 52 chr11 38155291 38155496 -83688360 - Lx5 LINE L1 -863 6187 5974 2 876 1650 26 5 0 chr11 38155496 38155688 -83688168 - B2_Mm1a SINE B2 0 193 1 2 876 2326 177 88 52 chr11 38155688 38156042 -83687814 - Lx5 LINE L1 -1077 5973 5608 2 876 295 218 15 88 chr11 38156056 38156192 -83687664 + Lx4B LINE L1 6926 7051 -7 2 876 21 0 0 0 chr11 38156354 38156375 -83687481 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 21 71 0 0 chr11 38157355 38157397 -83686459 + AT_rich Low_complexity Low_complexity 1 42 0 2 876 216 0 0 0 chr11 38159661 38159685 -83684171 + (T)n Simple_repeat Simple_repeat 1 24 0 2 876 441 0 0 0 chr11 38159806 38159855 -83684001 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 876 336 24 0 0 chr11 38162050 38162091 -83681765 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 876 211 326 20 31 chr11 38162131 38162229 -83681627 - L2a LINE L2 -273 3153 3057 2 876 315 0 0 0 chr11 38162670 38162705 -83681151 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 876 198 0 0 0 chr11 38163173 38163195 -83680661 + (T)n Simple_repeat Simple_repeat 1 22 0 2 876 252 0 0 0 chr11 38163512 38163540 -83680316 + (A)n Simple_repeat Simple_repeat 1 28 0 2 876 545 280 38 0 chr11 38164176 38164333 -83679523 - RSINE1 SINE B4 0 165 3 2 876 21 0 0 0 chr11 38165664 38165685 -83678171 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 290 288 0 0 chr11 38165696 38165762 -83678094 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 876 1242 291 69 40 chr11 38165777 38166182 -83677674 + MTD LTR MaLR 2 418 -1 2 876 225 0 0 0 chr11 38166196 38166221 -83677635 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 876 966 286 51 13 chr11 38167010 38167328 -83676528 + ORR1D2 LTR MaLR 51 370 0 2 876 192 77 0 0 chr11 38168551 38168577 -83675279 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 2 876 661 227 22 7 chr11 38171071 38171215 -83672641 - B3 SINE B2 -58 137 1 2 876 259 321 102 116 chr11 38171312 38171394 -83672462 + B4A SINE B4 6 79 -213 2 876 3837 132 44 5 chr11 38171394 38172012 -83671844 + Lx2 LINE L1 6355 6996 -1 2 876 259 321 102 116 chr11 38172012 38172144 -83671712 + B4A SINE B4 80 217 -75 2 876 321 333 0 26 chr11 38172850 38172964 -83670892 + L2 LINE L2 2255 2365 -1054 2 876 258 277 138 19 chr11 38173053 38173264 -83670592 - L1M3 LINE L1 -1447 4696 4458 2 876 21 0 0 0 chr11 38175178 38175199 -83668657 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 21 57 0 0 chr11 38175864 38175899 -83667957 + AT_rich Low_complexity Low_complexity 1 35 0 2 876 306 73 0 0 chr11 38176848 38176889 -83666967 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 876 421 340 124 59 chr11 38176992 38177214 -83666642 + L1MEf LINE L1 1301 1546 -4696 2 876 5784 161 32 16 chr11 38177214 38178303 -83665553 + Lx2B LINE L1 5893 6999 -1 2 876 421 340 124 59 chr11 38178303 38178452 -83665404 + L1MEf LINE L1 1547 1696 -4546 2 876 587 111 8 53 chr11 38178465 38178598 -83665258 + L1_Mus4 LINE L1 6507 6633 -3 2 876 22 35 0 0 chr11 38178598 38178627 -83665229 + AT_rich Low_complexity Low_complexity 1 29 0 2 876 23 0 0 0 chr11 38178868 38178891 -83664965 + AT_rich Low_complexity Low_complexity 1 23 0 2 876 359 322 122 21 chr11 38179113 38179775 -83664081 + L1MEf LINE L1 2334 3062 -3084 2 876 21 0 0 0 chr11 38179794 38179815 -83664041 + AT_rich Low_complexity Low_complexity 1 21 0 2 876 1669 56 0 53 chr11 38180038 38180282 -83663574 + L1Md_F3 LINE L1 6351 6581 -3 2 876 198 0 0 0 chr11 38180303 38180325 -83663531 + (T)n Simple_repeat Simple_repeat 1 22 0 2 876 1223 34 0 0 chr11 38180325 38180472 -83663384 - B1_Mus2 SINE Alu 0 147 1 2 876 1102 62 7 0 chr11 38180791 38180936 -83662920 - B1_Mm SINE Alu 0 147 2 2 876 27 29 0 0 chr11 38181041 38181075 -83662781 + AT_rich Low_complexity Low_complexity 1 34 0 2 876 21 36 0 0 chr11 38181188 38181216 -83662640 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 25 0 0 0 chr11 38182273 38182298 -83661558 + AT_rich Low_complexity Low_complexity 1 25 0 2 876 237 159 0 0 chr11 38182892 38182936 -83660920 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2 876 249 298 151 23 chr11 38183048 38183220 -83660636 + L1MEg LINE L1 622 815 -5569 2 876 304 302 8 65 chr11 38183294 38183418 -83660438 + L1MEg LINE L1 2254 2370 -4108 2 876 21 36 0 0 chr11 38183694 38183722 -83660134 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 2537 275 46 11 chr11 38183865 38184621 -83659235 + MERVK26-int LTR ERVK 2999 3781 -3138 2 876 692 190 7 28 chr11 38184636 38184777 -83659079 + RMER17B LTR ERVK 817 954 -4 2 876 564 182 7 64 chr11 38184781 38184922 -83658934 + RMER17A-int LTR ERVK 1 133 -1595 2 876 393 22 0 0 chr11 38184925 38184971 -83658885 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 876 28 0 0 0 chr11 38184974 38185002 -83658854 + GC_rich Low_complexity Low_complexity 1 28 0 2 876 1007 150 73 29 chr11 38185176 38185382 -83658474 - RMER17A2 LTR ERVK -691 215 1 2 876 1175 326 0 17 chr11 38185389 38185751 -83658105 + MERVK26-int LTR ERVK 6563 6918 -1 2 876 297 0 0 0 chr11 38186156 38186189 -83657667 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 876 235 185 44 100 chr11 38186460 38186550 -83657306 + L1M3 LINE L1 5334 5418 -765 2 876 1879 198 107 15 chr11 38186550 38186804 -83657052 + RLTR12A LTR ERVK 1 272 -296 2 876 694 73 18 0 chr11 38186804 38186914 -83656942 + (GA)n Simple_repeat Simple_repeat 1 112 0 2 876 1879 198 107 15 chr11 38186914 38187126 -83656730 + RLTR12A LTR ERVK 273 510 -58 2 876 262 130 0 55 chr11 38187128 38187201 -83656655 + A-rich Low_complexity Low_complexity 2 70 0 2 876 21 36 0 0 chr11 38187229 38187257 -83656599 + AT_rich Low_complexity Low_complexity 1 28 0 2 876 305 243 92 108 chr11 38187347 38187646 -83656210 + L1M3 LINE L1 5493 5787 -402 2 876 228 268 77 159 chr11 38187679 38187874 -83655982 + MT2B LTR ERVL 66 244 -357 2 876 394 324 99 14 chr11 38188397 38188538 -83655318 + RSINE1 SINE B4 13 165 0 2 876 305 364 79 47 chr11 38188565 38188969 -83654887 - L1MB7 LINE L1 0 6184 5768 2 876 361 318 108 4 chr11 38188986 38189245 -83654611 + L1M4 LINE L1 5466 5751 -433 2 876 519 241 60 0 chr11 38189423 38189556 -83654300 + B1_Mur2 SINE Alu 1 141 -8 2 876 441 0 0 0 chr11 38189606 38189655 -83654201 + (CTA)n Simple_repeat Simple_repeat 1 49 0 2 876 7976 54 4 1 chr11 38190100 38191491 -83652365 - L1Md_F2 LINE L1 0 6582 5189 2 876 360 0 0 0 chr11 38191732 38191772 -83652084 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 876 827 323 4 26 chr11 38191962 38192226 -83651630 - Lx5 LINE L1 -107 6943 6686 2 876 2454 31 0 0 chr11 38192639 38192925 -83650931 + L1Md_F2 LINE L1 5301 5586 -297 2 876 8001 48 2 8 chr11 38192925 38193926 -83649930 + L1Md_F2 LINE L1 5587 6581 -1 2 876 5318 193 98 3 chr11 38193980 38195585 -83648271 + Lx4B LINE L1 940 2712 -3165 2 876 9448 168 30 18 chr11 38195587 38197705 -83646151 + Lx4B LINE L1 3969 6116 -942 2 876 224 30 30 0 chr11 38198148 38198181 -83645675 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 876 1022 198 47 0 chr11 38198198 38198430 -83645426 - Lx LINE L1 -2 6652 6410 2 876 21 57 0 0 chr11 38198546 38198581 -83645275 + AT_rich Low_complexity Low_complexity 1 35 0 2 876 266 336 15 59 chr11 38200708 38200844 -83643012 + Tigger7 DNA MER2_type 2 131 -2360 2 876 1802 228 25 22 chr11 38200851 38201259 -83642597 + MTC LTR MaLR 13 421 0 2 876 363 371 60 49 chr11 38201314 38201498 -83642358 + Tigger7 DNA MER2_type 179 364 -2127 2 876 241 323 131 0 chr11 38201567 38201666 -83642190 + Tigger7 DNA MER2_type 674 785 -1706 2 876 449 17 17 0 chr11 38201666 38201724 -83642132 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 876 829 333 74 27 chr11 38201747 38202371 -83641485 + Tigger7 DNA MER2_type 380 1032 -1459 2 876 308 294 116 23 chr11 38202415 38202544 -83641312 + Tigger7 DNA MER2_type 2346 2486 -5 2 876 223 160 12 96 chr11 38203733 38203816 -83640040 + T-rich Low_complexity Low_complexity 2 77 0 2 876 311 288 6 219 chr11 38203828 38203988 -83639868 - B1F SINE Alu -8 141 16 2 876 651 340 43 10 chr11 38207747 38207955 -83635901 + B4 SINE B4 5 219 -73 2 876 1139 105 6 34 chr11 38207964 38208141 -83635715 + B2_Mm2 SINE B2 1 172 -23 2 876 35 0 0 0 chr11 38208141 38208176 -83635680 + AT_rich Low_complexity Low_complexity 1 35 0 2 876 234 326 67 15 chr11 38208498 38208632 -83635224 + L1MA9 LINE L1 5924 6064 -248 2 876 758 289 39 60 chr11 38208673 38209004 -83634852 + Lx9 LINE L1 6609 6932 -712 2 876 1032 281 76 18 chr11 38209017 38209470 -83634386 + Lx9 LINE L1 6875 7496 -148 2 876 267 273 0 72 chr11 38209661 38209744 -83634112 + B4A SINE B4 216 292 0 2 876 180 135 0 0 chr11 38209745 38209782 -83634074 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 876 227 337 51 0 chr11 38210562 38210660 -83633196 + L1M5 LINE L1 5564 5666 -528 3 876 182 257 154 51 chr11 38210886 38210964 -83632892 - L2c LINE L2 0 3387 3302 3 876 828 341 14 31 chr11 38212240 38212600 -83631256 - Lx8 LINE L1 -160 7313 6960 3 876 12602 124 51 9 chr11 38212843 38215524 -83628332 + L1_Mur1 LINE L1 21 3107 -2779 3 876 4911 106 69 0 chr11 38215524 38216273 -83627583 + Lx3_Mus LINE L1 6201 7001 -8 3 876 216 0 0 0 chr11 38224240 38224264 -83619592 + (A)n Simple_repeat Simple_repeat 1 24 0 3 876 22 35 0 0 chr11 38225943 38225972 -83617884 + AT_rich Low_complexity Low_complexity 1 29 0 3 876 291 312 70 26 chr11 38226457 38226572 -83617284 + Lx8 LINE L1 7073 7192 -281 3 876 3787 82 27 24 chr11 38226572 38227125 -83616731 - L1_Mus1 LINE L1 -5 6562 6008 3 876 405 348 31 6 chr11 38227133 38227292 -83616564 + ORR1E LTR MaLR 71 233 -126 3 876 251 300 115 39 chr11 38227341 38227445 -83616411 + ORR1E LTR MaLR 256 367 -12 3 876 421 331 35 52 chr11 38227582 38227872 -83615984 + B4 SINE B4 4 288 -4 3 876 8298 181 19 57 chr11 38229146 38231076 -83612780 - L1_Mur1 LINE L1 -1637 4249 2393 3 876 890 68 114 0 chr11 38231349 38231481 -83612375 - B1_Mus1 SINE Alu 0 148 2 3 876 253 308 57 69 chr11 38231588 38231798 -83612058 + B3 SINE B2 1 216 0 3 876 287 321 87 24 chr11 38233072 38233437 -83610419 - L1MB3 LINE L1 -5 6178 5792 3 876 24 77 0 0 chr11 38233592 38233644 -83610212 + AT_rich Low_complexity Low_complexity 1 52 0 3 876 405 294 137 55 chr11 38233747 38234331 -83609525 - L1MA9 LINE L1 -340 5972 5341 3 876 353 75 0 19 chr11 38234580 38234634 -83609222 + (TTA)n Simple_repeat Simple_repeat 1 53 0 3 876 315 91 0 0 chr11 38234634 38234678 -83609178 - Lx2A LINE L1 -15 6993 6950 3 876 3632 82 14 2 chr11 38235095 38235581 -83608275 - L1Md_F2 LINE L1 -14 6568 6077 3 876 944 289 45 31 chr11 38235666 38236163 -83607693 + Lx9 LINE L1 5477 6010 -1634 3 876 1512 323 40 26 chr11 38236340 38236960 -83606896 + Lx9 LINE L1 6422 7050 -594 3 876 305 301 80 27 chr11 38238083 38238233 -83605623 + L2 LINE L2 2253 2410 -1009 3 876 4182 50 4 2 chr11 38238494 38239015 -83604841 + L1Md_F2 LINE L1 6057 6578 -4 3 876 189 226 0 0 chr11 38239172 38239225 -83604631 + (ATG)n Simple_repeat Simple_repeat 3 55 0 3 876 426 329 13 39 chr11 38239251 38239406 -83604450 - RSINE1 SINE B4 0 165 15 3 876 2807 81 3 8 chr11 38239556 38239942 -83603914 - L1_Mus2 LINE L1 0 6566 6183 3 876 1115 328 82 17 chr11 38240469 38240604 -83603252 - Lx6 LINE L1 0 7460 7320 3 876 906 10 0 0 chr11 38240604 38240707 -83603149 + (GGGAA)n Simple_repeat Simple_repeat 4 106 0 3 876 1115 306 162 20 chr11 38240707 38241702 -83602154 - Lx6 LINE L1 -141 7319 5935 3 876 447 19 0 0 chr11 38242072 38242124 -83601732 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 876 270 227 45 0 chr11 38242131 38242197 -83601659 + (CATG)n Simple_repeat Simple_repeat 2 70 0 3 876 243 0 0 0 chr11 38242439 38242466 -83601390 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 876 1691 151 10 30 chr11 38242737 38243038 -83600818 + Lx LINE L1 6358 6652 -2 3 876 1372 69 74 0 chr11 38243127 38243343 -83600513 - Lx3_Mus LINE L1 -8 7001 6770 3 876 4767 89 8 48 chr11 38243343 38243812 -83600044 + Lx3_Mus LINE L1 6054 6500 -509 3 876 1073 90 0 0 chr11 38243812 38243956 -83599900 - B1_Mus2 SINE Alu -2 145 2 3 876 4767 89 8 48 chr11 38243956 38244214 -83599642 + Lx3_Mus LINE L1 6501 6752 -257 3 876 446 341 108 35 chr11 38244616 38245311 -83598545 - Lx6 LINE L1 -62 5818 5073 3 876 375 290 165 49 chr11 38246995 38247238 -83596618 + MLT1C LTR MaLR 157 427 -40 3 876 216 0 0 0 chr11 38248097 38248121 -83595735 + (T)n Simple_repeat Simple_repeat 1 24 0 3 876 401 366 52 38 chr11 38248968 38249181 -83594675 - B3A SINE B2 0 216 1 3 876 27 0 0 0 chr11 38249886 38249913 -83593943 + AT_rich Low_complexity Low_complexity 1 27 0 3 876 274 287 117 0 chr11 38250002 38250096 -83593760 + RMER30 DNA MER1_type 97 201 -1 3 876 8384 121 25 31 chr11 38250308 38252709 -83591147 + Lx3B LINE L1 4580 6968 -5 3 876 23 0 0 0 chr11 38252721 38252744 -83591112 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 348 219 0 0 chr11 38252755 38252821 -83591035 + B3A SINE B2 74 141 -57 3 876 345 109 0 0 chr11 38252839 38252894 -83590962 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 876 198 0 0 0 chr11 38252932 38252954 -83590902 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 876 254 217 14 0 chr11 38253879 38253948 -83589908 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 876 363 133 17 0 chr11 38253948 38254008 -83589848 - HAL1-3A_ME LINE L1 -831 2027 1967 3 876 307 257 82 123 chr11 38254008 38254109 -83589747 - ORSL DNA Tip100 -88 187 78 3 876 281 342 79 71 chr11 38254109 38254389 -83589467 + B4 SINE B4 5 286 -6 3 876 307 257 82 123 chr11 38254389 38254402 -83589454 - ORSL DNA Tip100 -198 77 71 3 876 342 0 0 0 chr11 38254402 38254440 -83589416 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 876 307 257 82 123 chr11 38254440 38254519 -83589337 - ORSL DNA Tip100 -205 70 1 3 876 187 246 99 28 chr11 38254537 38254608 -83589248 + MIR SINE MIR 85 160 -102 3 876 240 59 0 0 chr11 38258096 38258130 -83585726 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 876 508 14 29 0 chr11 38258323 38258392 -83585464 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 876 356 375 20 0 chr11 38259348 38259500 -83584356 - MER58A DNA MER1_type -68 156 2 3 876 23 0 0 0 chr11 38259900 38259923 -83583933 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 304 325 26 9 chr11 38259976 38260091 -83583765 - B3A SINE B2 -25 173 57 3 876 340 298 18 0 chr11 38260100 38260214 -83583642 + (TA)n Simple_repeat Simple_repeat 2 117 0 3 876 420 20 0 0 chr11 38260256 38260305 -83583551 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 876 294 354 10 10 chr11 38260342 38260442 -83583414 - RSINE1 SINE B4 -60 105 6 3 876 252 0 0 0 chr11 38260687 38260715 -83583141 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 3 876 936 137 17 6 chr11 38260715 38260891 -83582965 + CT-rich Low_complexity Low_complexity 2 179 0 3 876 1202 57 23 0 chr11 38260898 38261074 -83582782 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 876 21 57 0 0 chr11 38262876 38262911 -83580945 + AT_rich Low_complexity Low_complexity 1 35 0 3 876 29 28 0 0 chr11 38263120 38263156 -83580700 + AT_rich Low_complexity Low_complexity 1 36 0 3 876 445 185 41 32 chr11 38263641 38263764 -83580092 + Lx9 LINE L1 7515 7638 -6 3 876 2264 140 3 0 chr11 38264266 38264630 -83579226 - L1_Mur2 LINE L1 -1293 4584 4220 3 876 2358 140 78 0 chr11 38264636 38265036 -83578820 + Lx2 LINE L1 6565 6995 -2 3 876 293 272 0 32 chr11 38265711 38265806 -83578050 + (CATA)n Simple_repeat Simple_repeat 3 94 0 3 876 422 318 51 17 chr11 38266050 38266226 -83577630 + MIRb SINE MIR 57 238 -30 3 876 21 0 0 0 chr11 38266243 38266264 -83577592 + AT_rich Low_complexity Low_complexity 1 21 0 3 876 277 292 95 26 chr11 38266614 38266730 -83577126 + MTEa LTR MaLR 1 124 -255 3 876 358 321 7 63 chr11 38267689 38267832 -83576024 + B1_Mur1 SINE Alu 2 136 -13 3 876 226 28 0 0 chr11 38268538 38268574 -83575282 - Lx LINE L1 -8 6646 6611 3 876 2498 81 3 0 chr11 38268571 38268904 -83574952 - L1_Mus3 LINE L1 -240 6398 6065 3 876 8110 115 2 1 chr11 38268895 38270259 -83573597 + L1_Mus3 LINE L1 4644 6009 -629 3 876 31 76 0 0 chr11 38271183 38271249 -83572607 + AT_rich Low_complexity Low_complexity 1 66 0 3 876 351 295 92 5 chr11 38272255 38272439 -83571417 + L1ME3 LINE L1 5774 5973 -189 3 876 621 228 137 5 chr11 38272560 38272750 -83571106 - B3 SINE B2 0 216 2 3 877 376 288 63 32 chr11 38273546 38273704 -83570152 - Lx8 LINE L1 -352 7121 6959 3 877 259 283 221 16 chr11 38273737 38273859 -83569997 + Tigger5 DNA MER2_type 2259 2405 -1 3 877 249 33 0 0 chr11 38273897 38273927 -83569929 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 877 201 154 0 0 chr11 38274863 38274902 -83568954 + T-rich Low_complexity Low_complexity 2 40 0 3 877 227 29 0 54 chr11 38275489 38275526 -83568330 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 877 1638 209 130 43 chr11 38275526 38276010 -83567846 - RMER5 LTR ERV1 -8 526 1 3 877 662 53 11 0 chr11 38276050 38276145 -83567711 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 3 877 274 336 25 16 chr11 38276322 38276443 -83567413 - RMER5 LTR ERV1 -27 507 386 3 877 700 357 39 19 chr11 38277321 38277789 -83566067 + Lx8 LINE L1 6675 7151 -322 3 877 657 253 20 0 chr11 38278062 38278208 -83565648 + B1_Mur2 SINE Alu 1 149 0 3 877 1071 209 110 93 chr11 38278837 38279201 -83564655 + ORR1D1 LTR MaLR 3 372 -2 3 877 677 183 0 0 chr11 38279480 38279595 -83564261 - Lx2 LINE L1 -82 6915 6801 3 877 405 0 0 0 chr11 38279653 38279698 -83564158 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 877 2098 139 3 9 chr11 38280220 38280562 -83563294 - L1_Mus4 LINE L1 -1 6635 6296 3 877 903 106 0 0 chr11 38281067 38281209 -83562647 + (CA)n Simple_repeat Simple_repeat 1 142 0 3 877 282 248 29 10 chr11 38282469 38282571 -83561285 - Lx9 LINE L1 -24 7620 7517 3 877 21 36 0 0 chr11 38282845 38282873 -83560983 + AT_rich Low_complexity Low_complexity 1 28 0 3 877 944 245 94 26 chr11 38283093 38283547 -83560309 - Lx7 LINE L1 -5 7691 7155 3 877 226 163 23 0 chr11 38284456 38284499 -83559357 + CT-rich Low_complexity Low_complexity 2 45 0 3 877 996 73 19 26 chr11 38284672 38284826 -83559030 + L1Md_F2 LINE L1 6430 6582 0 3 877 286 373 62 56 chr11 38285011 38285173 -83558683 - RSINE1 SINE B4 0 165 3 3 877 471 219 167 0 chr11 38285691 38285805 -83558051 - B1_Mur4 SINE Alu -7 143 11 3 877 180 111 0 0 chr11 38285816 38285843 -83558013 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 877 2351 195 21 15 chr11 38285843 38286322 -83557534 - Lx2B LINE L1 -10 6990 6509 3 877 4304 168 31 5 chr11 38286322 38287368 -83556488 - Lx2B LINE L1 -636 6364 5294 3 877 25 31 0 0 chr11 38287890 38287922 -83555934 + AT_rich Low_complexity Low_complexity 1 32 0 4 877 1613 165 42 57 chr11 38288105 38288439 -83555417 - ORR1A4 LTR MaLR 0 329 1 4 877 24 0 0 0 chr11 38289404 38289428 -83554428 + AT_rich Low_complexity Low_complexity 1 24 0 4 877 453 19 0 0 chr11 38290376 38290430 -83553426 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 4 877 4395 155 31 83 chr11 38290957 38291959 -83551897 - RMER17B LTR ERVK -10 948 1 4 877 458 139 0 12 chr11 38292514 38292594 -83551262 - URR1B DNA MER1_type -4 221 143 4 877 3148 90 39 14 chr11 38292594 38293081 -83550775 + L1_Mus3 LINE L1 6135 6633 -5 4 877 229 286 9 28 chr11 38293535 38293643 -83550213 + (TATATG)n Simple_repeat Simple_repeat 3 108 0 4 877 200 190 31 31 chr11 38293661 38293824 -83550032 + (TA)n Simple_repeat Simple_repeat 2 164 0 4 877 522 189 0 0 chr11 38293863 38293969 -83549887 + (TA)n Simple_repeat Simple_repeat 1 106 0 4 877 418 214 54 0 chr11 38294246 38294358 -83549498 - Lx3B LINE L1 -3 6970 6853 4 877 2882 33 0 0 chr11 38295037 38295374 -83548482 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 877 36853 22 28 10 chr11 38295374 38299706 -83544150 + IAPEz-int LTR ERVK 8 4415 -2066 4 877 6884 29 4 1 chr11 38299684 38300490 -83543366 + IAPEz-int LTR ERVK 5674 6481 0 4 877 2882 33 0 0 chr11 38300490 38300827 -83543029 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 877 22 56 0 0 chr11 38300888 38300924 -83542932 + AT_rich Low_complexity Low_complexity 1 36 0 4 877 943 278 88 8 chr11 38301246 38301634 -83542222 - Lx9 LINE L1 -3 7641 7223 4 877 6549 48 18 1 chr11 38303667 38304462 -83539394 + RLTR13C2 LTR ERVK 1 808 0 4 877 1078 198 22 7 chr11 38304463 38304687 -83539169 + L1_Mur2 LINE L1 5537 5804 -320 4 877 26 50 0 0 chr11 38305685 38305725 -83538131 + AT_rich Low_complexity Low_complexity 1 40 0 4 877 21 0 0 0 chr11 38305751 38305772 -83538084 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 525 334 68 71 chr11 38305994 38306343 -83537513 + MLT1E3 LTR MaLR 256 574 -79 4 877 876 220 4 64 chr11 38306355 38306588 -83537268 + RMER13B LTR ERVK 378 596 -312 4 877 222 211 0 62 chr11 38306595 38306676 -83537180 + G-rich Low_complexity Low_complexity 3 78 0 4 877 710 231 133 97 chr11 38306677 38306955 -83536901 + RMER13B LTR ERVK 617 904 -4 4 877 616 359 20 8 chr11 38306992 38307239 -83536617 + Lx8 LINE L1 7108 7357 -116 4 877 326 73 0 0 chr11 38307244 38307299 -83536557 + L1_Mus4 LINE L1 6579 6633 -3 4 877 25 0 0 0 chr11 38308622 38308647 -83535209 + AT_rich Low_complexity Low_complexity 1 25 0 4 877 519 334 112 27 chr11 38309119 38309457 -83534399 - MLT1B LTR MaLR -14 376 10 4 877 22 56 0 0 chr11 38310251 38310287 -83533569 + AT_rich Low_complexity Low_complexity 1 36 0 4 877 283 350 100 0 chr11 38311279 38311439 -83532417 - B4 SINE B4 0 292 117 4 877 404 265 12 0 chr11 38311509 38311592 -83532264 - B4 SINE B4 -207 85 2 4 877 560 254 245 38 chr11 38311991 38312152 -83531704 - MTD LTR MaLR 0 419 210 4 877 486 0 0 0 chr11 38312152 38312206 -83531650 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 877 560 254 245 38 chr11 38312206 38312391 -83531465 - MTD LTR MaLR -210 209 1 4 877 23 0 0 0 chr11 38312492 38312515 -83531341 + AT_rich Low_complexity Low_complexity 1 23 0 4 877 207 108 81 0 chr11 38312947 38312984 -83530872 + A-rich Low_complexity Low_complexity 5 44 0 4 877 278 87 22 0 chr11 38313648 38313694 -83530162 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 877 259 330 23 108 chr11 38313947 38314076 -83529780 + PB1D9 SINE Alu 3 120 0 4 877 29 28 0 0 chr11 38314099 38314135 -83529721 + AT_rich Low_complexity Low_complexity 1 36 0 4 877 21 0 0 0 chr11 38314192 38314213 -83529643 + AT_rich Low_complexity Low_complexity 1 21 0 4 877 453 286 45 17 chr11 38315672 38315850 -83528006 - B3A SINE B2 -15 183 1 4 877 547 304 41 53 chr11 38315881 38316051 -83527805 + B4 SINE B4 5 172 -120 4 877 226 273 45 9 chr11 38316421 38316532 -83527324 + GA-rich Low_complexity Low_complexity 6 120 0 4 877 201 211 0 0 chr11 38316777 38316829 -83527027 + CT-rich Low_complexity Low_complexity 2 53 0 4 877 311 341 142 28 chr11 38316892 38317103 -83526753 - B4A SINE B4 -47 245 11 4 877 261 381 75 0 chr11 38317277 38317411 -83526445 + RSINE1 SINE B4 3 146 -19 4 877 438 204 0 0 chr11 38318926 38319024 -83524832 + GA-rich Low_complexity Low_complexity 3 100 0 4 877 205 148 56 0 chr11 38320308 38320344 -83523512 + T-rich Low_complexity Low_complexity 20 58 0 4 877 1087 112 6 11 chr11 38320344 38320524 -83523332 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 877 205 148 56 0 chr11 38320524 38320541 -83523315 + T-rich Low_complexity Low_complexity 3 19 0 4 877 450 0 0 0 chr11 38320547 38320597 -83523259 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 4 877 426 340 34 27 chr11 38323619 38323767 -83520089 + RSINE1 SINE B4 11 159 -6 4 877 765 315 137 37 chr11 38324557 38324907 -83518949 - MTD LTR MaLR -14 405 21 4 877 185 234 14 86 chr11 38326458 38326528 -83517328 - L3 LINE CR1 -3461 1028 964 4 877 265 344 180 25 chr11 38327734 38327934 -83515922 + L2 LINE L2 1406 1636 -1783 4 877 369 0 0 0 chr11 38328272 38328313 -83515543 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 877 442 331 11 51 chr11 38328317 38328495 -83515361 + MLT1D LTR MaLR 262 432 -73 4 877 251 316 50 6 chr11 38328637 38328796 -83515060 + L2 LINE L2 2046 2211 -1208 4 877 1715 128 30 0 chr11 38328995 38329139 -83514717 - Lx3B LINE L1 -1105 5868 5725 4 877 198 0 0 0 chr11 38329139 38329161 -83514695 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4 877 1715 128 30 0 chr11 38329161 38329282 -83514574 - Lx3B LINE L1 -1249 5724 5596 4 877 1257 178 48 4 chr11 38329282 38329530 -83514326 + Lx3C LINE L1 6713 6971 -5 4 877 1693 164 36 36 chr11 38329536 38329871 -83513985 - Lx4A LINE L1 -7 7051 6717 4 877 709 209 6 11 chr11 38330216 38330395 -83513461 + GA-rich Low_complexity Low_complexity 1 178 0 4 877 234 238 0 0 chr11 38330398 38330440 -83513416 + polypurine Low_complexity Low_complexity 3 44 0 4 877 196 154 39 0 chr11 38330440 38330492 -83513364 + GA-rich Low_complexity Low_complexity 4 57 0 4 877 897 180 0 0 chr11 38330511 38330683 -83513173 + GA-rich Low_complexity Low_complexity 1 172 0 4 877 195 129 0 0 chr11 38330724 38330755 -83513101 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 4 877 21 57 0 0 chr11 38330778 38330813 -83513043 + AT_rich Low_complexity Low_complexity 1 35 0 4 877 24 0 0 0 chr11 38331487 38331511 -83512345 + AT_rich Low_complexity Low_complexity 1 24 0 4 877 5252 73 26 0 chr11 38332126 38332825 -83511031 + L1_Mus2 LINE L1 5850 6566 0 4 877 24 0 0 0 chr11 38333674 38333698 -83510158 + AT_rich Low_complexity Low_complexity 1 24 0 4 877 24 0 0 0 chr11 38334456 38334480 -83509376 + AT_rich Low_complexity Low_complexity 1 24 0 4 877 1162 62 7 0 chr11 38337815 38337960 -83505896 - B1_Mus2 SINE Alu -1 146 1 4 877 266 184 13 38 chr11 38338189 38338206 -83505650 + (TA)n Simple_repeat Simple_repeat 2 18 0 4 877 414 0 0 0 chr11 38338206 38338252 -83505604 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 4 877 266 184 13 38 chr11 38338252 38338313 -83505543 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 877 339 276 147 43 chr11 38338880 38339111 -83504745 - Lx8 LINE L1 -5 7468 7214 4 877 1325 222 75 12 chr11 38339312 38339645 -83504211 + RLTR15 LTR ERVK 6 359 0 4 877 22 0 0 0 chr11 38340488 38340510 -83503346 + AT_rich Low_complexity Low_complexity 1 22 0 4 877 635 332 56 87 chr11 38341173 38341460 -83502396 - B4 SINE B4 -2 290 13 4 877 22 0 0 0 chr11 38341712 38341734 -83502122 + AT_rich Low_complexity Low_complexity 1 22 0 4 877 22 0 0 0 chr11 38342051 38342073 -83501783 + AT_rich Low_complexity Low_complexity 1 22 0 4 877 430 344 38 16 chr11 38344920 38345106 -83498750 + B4A SINE B4 20 209 -83 4 877 203 345 71 44 chr11 38345122 38345304 -83498552 + MIR SINE MIR 27 213 -49 4 877 219 262 53 83 chr11 38345542 38345675 -83498181 - MIRb SINE MIR -38 230 102 4 877 405 0 0 0 chr11 38346099 38346144 -83497712 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 877 565 370 65 18 chr11 38346157 38346435 -83497421 - B4A SINE B4 0 292 2 4 877 598 213 87 241 chr11 38346586 38346806 -83497050 + RMER16 LTR ERVK 214 402 -131 4 877 964 59 96 0 chr11 38346806 38346942 -83496914 + B1_Mur4 SINE Alu 2 150 0 4 877 598 213 87 241 chr11 38346942 38347099 -83496757 + RMER16 LTR ERVK 403 533 0 4 877 381 333 33 57 chr11 38347169 38347379 -83496477 - B3 SINE B2 -10 206 2 4 877 357 43 0 0 chr11 38348427 38348474 -83495382 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 877 453 19 0 0 chr11 38349286 38349340 -83494516 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 877 786 22 0 0 chr11 38350143 38350235 -83493621 + (GGAA)n Simple_repeat Simple_repeat 3 94 0 4 877 180 0 0 0 chr11 38351889 38351909 -83491947 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 877 24 53 0 0 chr11 38352102 38352140 -83491716 + AT_rich Low_complexity Low_complexity 1 38 0 4 877 654 267 7 0 chr11 38352140 38352275 -83491581 + B1_Mur1 SINE Alu 13 148 -1 4 877 793 270 57 24 chr11 38352293 38352502 -83491354 + B3 SINE B2 1 216 0 4 877 231 121 29 29 chr11 38352748 38352816 -83491040 + A-rich Low_complexity Low_complexity 5 72 0 4 877 232 245 20 0 chr11 38354579 38354628 -83489228 + polypyrimidine Low_complexity Low_complexity 4 53 0 4 877 733 161 6 69 chr11 38354629 38354802 -83489054 - L1Md_F2 LINE L1 -5 6577 6416 4 877 288 53 0 0 chr11 38356272 38356310 -83487546 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 877 553 187 9 27 chr11 38356310 38356420 -83487436 + B3 SINE B2 109 216 0 4 877 423 0 0 0 chr11 38356570 38356617 -83487239 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 877 218 105 26 0 chr11 38357283 38357321 -83486535 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 877 562 278 93 14 chr11 38360189 38360404 -83483452 - Tigger1 DNA MER2_type 0 2418 2187 4 877 180 0 0 0 chr11 38361303 38361323 -83482533 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 877 418 309 22 14 chr11 38361573 38361711 -83482145 + B4A SINE B4 140 278 -14 4 877 534 276 113 5 chr11 38362024 38362210 -83481646 + B3 SINE B2 1 206 -10 4 877 31 0 0 0 chr11 38362210 38362241 -83481615 + AT_rich Low_complexity Low_complexity 1 31 0 5 877 619 336 14 18 chr11 38362478 38362696 -83481160 + ID_B1 SINE B4 1 217 -7 5 877 600 115 26 0 chr11 38364196 38364309 -83479547 + (GAAA)n Simple_repeat Simple_repeat 3 118 0 5 877 356 0 23 0 chr11 38364310 38364354 -83479502 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 5 877 513 0 0 0 chr11 38364787 38364844 -83479012 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 877 183 325 31 102 chr11 38365109 38365236 -83478620 + L2c LINE L2 3267 3384 -3 5 877 23 68 0 0 chr11 38367772 38367816 -83476040 + AT_rich Low_complexity Low_complexity 1 44 0 5 877 679 78 19 0 chr11 38367842 38367945 -83475911 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 877 226 274 16 0 chr11 38368019 38368081 -83475775 - ID_B1 SINE B4 -63 161 99 5 877 489 361 60 57 chr11 38368324 38368777 -83475079 + MLT1D LTR MaLR 7 460 -45 5 877 217 294 73 0 chr11 38368842 38368910 -83474946 - MIR SINE MIR -72 190 118 5 877 477 0 0 0 chr11 38368960 38369013 -83474843 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 877 207 100 0 0 chr11 38369392 38369422 -83474434 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 877 932 174 30 15 chr11 38369764 38369963 -83473893 - Lx LINE L1 -5 6649 6448 5 877 852 212 0 22 chr11 38369963 38370146 -83473710 + Lx LINE L1 6208 6386 -268 5 877 405 372 92 32 chr11 38370707 38371076 -83472780 + L1MEf LINE L1 24 414 -6133 5 877 1326 78 0 0 chr11 38371076 38371256 -83472600 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 877 215 160 0 39 chr11 38371256 38371308 -83472548 + CT-rich Low_complexity Low_complexity 1 50 0 5 877 342 395 64 39 chr11 38371423 38372056 -83471800 + L1MEf LINE L1 524 1164 -5476 5 877 300 292 167 17 chr11 38372136 38372376 -83471480 + L1MEf LINE L1 1287 1562 -5078 5 877 366 61 0 0 chr11 38372480 38372529 -83471327 + (CATA)n Simple_repeat Simple_repeat 4 52 0 5 877 23 0 0 0 chr11 38372572 38372595 -83471261 + AT_rich Low_complexity Low_complexity 1 23 0 5 877 414 39 0 0 chr11 38372741 38372793 -83471063 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 877 462 320 69 45 chr11 38372815 38373029 -83470827 - B3A SINE B2 -2 214 1 5 877 418 318 180 16 chr11 38373069 38373385 -83470471 + L1MEf LINE L1 1917 2284 -4356 5 877 224 320 40 0 chr11 38373513 38373588 -83470268 + ID4_ SINE ID 4 81 -2 5 877 369 371 14 7 chr11 38373906 38374047 -83469809 + RSINE1 SINE B4 8 149 -16 5 877 21 0 0 0 chr11 38374148 38374169 -83469687 + AT_rich Low_complexity Low_complexity 1 21 0 5 877 550 300 65 45 chr11 38374171 38374889 -83468967 + L1MEf LINE L1 2799 3531 -3013 5 877 735 238 46 36 chr11 38375244 38375440 -83468416 - URR1B DNA MER1_type 0 225 28 5 877 629 164 81 50 chr11 38375440 38375600 -83468256 + Lx3C LINE L1 6802 6966 -10 5 877 652 262 75 20 chr11 38376429 38376582 -83467274 + B3 SINE B2 1 163 -53 5 877 315 0 0 0 chr11 38376582 38376617 -83467239 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 877 652 262 75 20 chr11 38376617 38376662 -83467194 + B3 SINE B2 164 209 -7 5 877 1861 57 0 0 chr11 38376729 38376956 -83466900 - L1_Mus2 LINE L1 -251 6315 6089 5 877 1528 112 50 8 chr11 38376956 38377198 -83466658 + L1_Mus2 LINE L1 6315 6566 0 5 877 24 0 0 0 chr11 38377209 38377233 -83466623 + AT_rich Low_complexity Low_complexity 1 24 0 5 877 258 32 0 0 chr11 38377266 38377297 -83466559 + (A)n Simple_repeat Simple_repeat 1 31 0 5 877 256 413 82 11 chr11 38378261 38378528 -83465328 - L2a LINE L2 -230 3196 2911 5 877 1114 62 7 46 chr11 38379160 38379313 -83464543 + B1_Mus2 SINE Alu 1 147 0 5 877 198 0 0 0 chr11 38379316 38379338 -83464518 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 877 223 146 36 0 chr11 38379451 38379506 -83464350 + GA-rich Low_complexity Low_complexity 3 59 0 5 877 470 289 0 16 chr11 38379534 38379657 -83464199 + Lx8 LINE L1 7054 7174 -299 5 877 721 347 50 15 chr11 38380000 38380342 -83463514 + MLT1A1 LTR MaLR 39 392 -16 5 877 423 0 0 0 chr11 38380364 38380411 -83463445 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 877 396 0 0 0 chr11 38380553 38380597 -83463259 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 877 314 100 17 0 chr11 38380597 38380657 -83463199 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 877 258 241 94 24 chr11 38382454 38382539 -83461317 - MER94 DNA AcHobo -3 131 41 5 877 414 197 26 58 chr11 38383130 38383286 -83460570 + RMER17B LTR ERVK 312 462 -496 5 877 929 318 57 9 chr11 38384846 38385182 -83458674 - MTE2b LTR MaLR -18 361 10 5 877 293 339 27 18 chr11 38385296 38385407 -83458449 + PB1D10 SINE Alu 3 114 -3 5 877 231 114 0 0 chr11 38387069 38387104 -83456752 + (A)n Simple_repeat Simple_repeat 1 35 0 5 877 495 245 0 38 chr11 38387316 38387422 -83456434 - B1_Mur2 SINE Alu -40 109 8 5 877 23 68 0 0 chr11 38388190 38388234 -83455622 + AT_rich Low_complexity Low_complexity 1 44 0 5 877 23 0 0 0 chr11 38388376 38388399 -83455457 + AT_rich Low_complexity Low_complexity 1 23 0 5 877 378 348 43 35 chr11 38388932 38389164 -83454692 - RMER15 LTR ERVL -16 559 326 5 877 638 35 12 0 chr11 38389624 38389709 -83454147 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 877 729 261 5 43 chr11 38389719 38389903 -83453953 - B3A SINE B2 -17 181 5 5 877 264 100 0 0 chr11 38389970 38390010 -83453846 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 877 237 327 78 42 chr11 38391427 38391593 -83452263 - MER5B DNA MER1_type -3 175 4 5 877 216 0 0 0 chr11 38392079 38392103 -83451753 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 5 877 381 58 0 0 chr11 38392105 38392157 -83451699 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 5 877 202 154 26 0 chr11 38392382 38392421 -83451435 + A-rich Low_complexity Low_complexity 3 42 0 5 877 402 253 133 87 chr11 38393173 38393487 -83450369 - RMER4B LTR ERVK -11 574 324 5 877 184 184 0 50 chr11 38393492 38393532 -83450324 - L3 LINE CR1 -3562 927 890 5 877 292 341 80 16 chr11 38394311 38394436 -83449420 - ID_B1 SINE B4 -10 214 82 5 877 282 115 0 0 chr11 38394879 38394931 -83448925 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 877 375 293 24 73 chr11 38395423 38395629 -83448227 - B3A SINE B2 0 198 3 5 877 24 0 0 0 chr11 38395787 38395811 -83448045 + AT_rich Low_complexity Low_complexity 1 24 0 5 877 1105 294 121 18 chr11 38397320 38397773 -83446083 + Lx6 LINE L1 5995 6494 -966 5 877 630 119 14 25 chr11 38397773 38397900 -83445956 + B1_Mus1 SINE Alu 2 119 -1 5 877 4797 147 10 63 chr11 38398145 38399076 -83444780 - Lx3C LINE L1 -16 6960 6080 5 877 249 83 0 0 chr11 38400267 38400303 -83443553 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 877 424 286 95 20 chr11 38401120 38401320 -83442536 + B3 SINE B2 2 216 0 5 877 273 210 0 0 chr11 38401731 38401793 -83442063 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 877 434 229 0 0 chr11 38403035 38403118 -83440738 - B1_Mur2 SINE Alu -57 92 10 5 877 271 345 0 22 chr11 38403045 38403134 -83440722 - B4A SINE B4 -125 167 81 5 877 462 18 0 0 chr11 38403135 38403190 -83440666 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 877 415 33 16 16 chr11 38403190 38403252 -83440604 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 877 21 0 0 0 chr11 38403346 38403367 -83440489 + AT_rich Low_complexity Low_complexity 1 21 0 5 877 253 333 28 28 chr11 38403378 38403557 -83440299 + L1MC3 LINE L1 7600 7778 -7 5 878 192 158 0 0 chr11 38404766 38404804 -83439052 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 878 289 274 83 28 chr11 38405500 38405609 -83438247 - PB1D10 SINE Alu -2 115 1 5 878 6476 67 22 6 chr11 38406341 38406359 -83437497 + L1_Mm LINE L1 3940 3955 -1928 5 878 521 69 29 10 chr11 38406359 38406461 -83437395 - L1Md_F2 LINE L1 -2 6580 6477 5 878 6476 67 22 6 chr11 38406461 38406701 -83437155 + L1_Mm LINE L1 3956 4195 -1688 5 878 396 0 0 0 chr11 38406701 38406745 -83437111 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 878 306 0 0 0 chr11 38406745 38406778 -83437078 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 878 6476 67 22 6 chr11 38406778 38407394 -83436462 + L1_Mm LINE L1 4196 4829 -1054 5 878 3801 259 114 60 chr11 38407745 38408841 -83435015 + Lx7 LINE L1 5999 7207 -489 5 878 1221 106 0 0 chr11 38408841 38409021 -83434835 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 878 3801 259 114 60 chr11 38409021 38409193 -83434663 + Lx7 LINE L1 7208 7340 -356 5 878 351 0 0 0 chr11 38409193 38409232 -83434624 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 878 435 19 0 0 chr11 38409232 38409283 -83434573 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 878 3801 259 114 60 chr11 38409283 38409353 -83434503 + Lx7 LINE L1 7341 7411 -285 5 878 2034 225 29 17 chr11 38410174 38410752 -83433104 + L1VL4 LINE L1 165 921 -5437 5 878 3603 165 18 20 chr11 38410749 38411514 -83432342 + MusHAL1 LINE L1 123 886 -1826 5 878 1057 50 25 0 chr11 38411515 38411713 -83432143 + (TCTA)n Simple_repeat Simple_repeat 1 203 0 5 878 954 199 78 9 chr11 38411736 38411954 -83431902 + Lx2B LINE L1 6758 6990 -10 5 878 23 0 0 0 chr11 38411979 38412002 -83431854 + AT_rich Low_complexity Low_complexity 1 23 0 5 878 1754 114 4 7 chr11 38412251 38412525 -83431331 - L1_Mus2 LINE L1 -1 6565 6293 5 878 6663 134 117 20 chr11 38412526 38413210 -83430646 - L1_Mm LINE L1 -1031 4852 4083 5 878 1218 27 0 0 chr11 38413210 38413357 -83430499 + B1_Mus2 SINE Alu 1 147 0 5 878 6663 134 117 20 chr11 38413357 38413971 -83429885 - L1_Mm LINE L1 -1801 4082 3428 5 878 22 0 0 0 chr11 38414104 38414126 -83429730 + AT_rich Low_complexity Low_complexity 1 22 0 5 878 21 57 0 0 chr11 38414239 38414274 -83429582 + AT_rich Low_complexity Low_complexity 1 35 0 5 878 339 347 50 25 chr11 38415555 38415756 -83428100 + L1MEg2 LINE L1 596 801 -5651 5 878 692 163 114 71 chr11 38416138 38416349 -83427507 + Lx3C LINE L1 6757 6976 0 5 878 34 0 0 0 chr11 38416367 38416401 -83427455 + AT_rich Low_complexity Low_complexity 1 34 0 5 878 235 227 40 0 chr11 38416517 38416592 -83427264 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 878 361 326 37 19 chr11 38416673 38416935 -83426921 - L1_Mur3 LINE L1 -336 5544 5289 5 878 1807 152 134 3 chr11 38417016 38417538 -83426318 + L1_Mus3 LINE L1 5926 6582 0 5 878 955 250 14 5 chr11 38417700 38417913 -83425943 + B3 SINE B2 2 216 0 6 878 242 342 112 30 chr11 38418102 38418876 -83424980 + L1ME3B LINE L1 2121 2958 -3188 6 878 387 113 0 0 chr11 38418919 38418981 -83424875 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 878 594 160 0 0 chr11 38419682 38419813 -83424043 + (CA)n Simple_repeat Simple_repeat 2 132 0 6 878 288 189 68 0 chr11 38420086 38420160 -83423696 + Lx5 LINE L1 6969 7047 -3 6 878 314 343 111 58 chr11 38421662 38422166 -83421690 + L1ME3B LINE L1 5555 6085 -155 6 878 201 147 0 0 chr11 38422968 38423002 -83420854 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 6 878 373 326 23 0 chr11 38423022 38423151 -83420705 + Lx6 LINE L1 6251 6382 -1078 6 878 4633 68 2 11 chr11 38423192 38423801 -83420055 - L1_Mus1 LINE L1 0 6567 5965 6 878 1115 70 0 14 chr11 38423908 38424054 -83419802 + B1_Mus1 SINE Alu 1 144 -4 6 878 22 56 0 0 chr11 38424597 38424633 -83419223 + AT_rich Low_complexity Low_complexity 1 36 0 6 878 294 376 20 13 chr11 38428082 38428233 -83415623 + MLT1A0 LTR MaLR 10 161 -204 6 878 352 279 14 41 chr11 38428245 38428391 -83415465 + MLT1A0 LTR MaLR 222 363 -2 6 878 24 32 0 0 chr11 38428662 38428693 -83415163 + AT_rich Low_complexity Low_complexity 1 31 0 6 878 244 333 0 12 chr11 38428940 38429025 -83414831 + MER53 DNA hAT 8 91 -102 6 878 1643 115 44 4 chr11 38429060 38429330 -83414526 + L1_Mus2 LINE L1 6286 6566 0 6 878 288 0 0 0 chr11 38430096 38430128 -83413728 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 878 351 237 34 11 chr11 38430128 38430303 -83413553 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 878 438 20 0 0 chr11 38430376 38430427 -83413429 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 878 556 233 0 0 chr11 38431131 38431234 -83412622 + B1_Mur4 SINE Alu 11 113 -37 6 878 698 141 6 0 chr11 38431251 38431421 -83412435 + (TA)n Simple_repeat Simple_repeat 1 171 0 6 878 250 340 137 57 chr11 38431453 38431665 -83412191 - Lx8 LINE L1 -803 6670 6442 6 878 23 33 0 0 chr11 38431926 38431956 -83411900 + AT_rich Low_complexity Low_complexity 1 30 0 6 878 1523 217 25 76 chr11 38432087 38432141 -83411715 - ORR1D1 LTR MaLR 0 374 332 6 878 378 115 0 60 chr11 38432141 38432224 -83411632 - L1Md_F2 LINE L1 0 6582 6505 6 878 1523 217 25 76 chr11 38432224 38432563 -83411293 - ORR1D1 LTR MaLR -43 331 1 6 878 1290 78 0 0 chr11 38433467 38433687 -83410169 + (CA)n Simple_repeat Simple_repeat 1 220 0 6 878 209 59 0 56 chr11 38433829 38433865 -83409991 + (CATAT)n Simple_repeat Simple_repeat 1 34 0 6 878 245 304 0 0 chr11 38434382 38434516 -83409340 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 878 618 113 0 0 chr11 38434518 38434633 -83409223 + (TC)n Simple_repeat Simple_repeat 2 116 0 6 878 564 339 0 39 chr11 38434639 38434820 -83409036 - B4A SINE B4 -31 261 88 6 878 315 269 259 17 chr11 38435168 38435342 -83408514 + Lx8 LINE L1 6974 7189 -284 6 878 33 25 0 0 chr11 38435680 38435720 -83408136 + AT_rich Low_complexity Low_complexity 1 40 0 6 878 1666 170 92 2 chr11 38436015 38436340 -83407516 - Lx3B LINE L1 0 7009 6647 6 878 4562 120 51 52 chr11 38436340 38437159 -83406697 + Lx3C LINE L1 5820 6637 -339 6 878 650 308 34 15 chr11 38437483 38437687 -83406169 - B3 SINE B2 -1 215 8 6 878 23 33 0 0 chr11 38437755 38437785 -83406071 + AT_rich Low_complexity Low_complexity 1 30 0 6 878 21 0 0 0 chr11 38437811 38437832 -83406024 + AT_rich Low_complexity Low_complexity 1 21 0 6 878 684 83 0 0 chr11 38437873 38437969 -83405887 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 878 22 56 0 0 chr11 38438471 38438507 -83405349 + AT_rich Low_complexity Low_complexity 1 36 0 6 878 22 0 0 0 chr11 38438531 38438553 -83405303 + AT_rich Low_complexity Low_complexity 1 22 0 6 878 27 49 0 0 chr11 38439442 38439483 -83404373 + AT_rich Low_complexity Low_complexity 1 41 0 6 878 795 332 24 132 chr11 38439822 38440526 -83403330 + L1_Rod LINE L1 4606 5238 -609 6 878 1293 117 44 40 chr11 38440526 38440775 -83403081 + L1_Mus3 LINE L1 6389 6638 0 6 878 795 332 24 132 chr11 38440775 38440834 -83403022 + L1_Rod LINE L1 5239 5288 -559 6 878 3171 108 21 25 chr11 38440834 38441345 -83402511 + Lx3A LINE L1 6473 6981 0 6 878 795 332 24 132 chr11 38441345 38441357 -83402499 + L1_Rod LINE L1 5289 5289 -558 6 878 387 0 0 0 chr11 38441357 38441400 -83402456 + (TAA)n Simple_repeat Simple_repeat 1 43 0 6 878 795 332 24 132 chr11 38441400 38441599 -83402257 + L1_Rod LINE L1 5289 5456 -391 6 878 1013 95 0 0 chr11 38441599 38441736 -83402120 + B1_Mm SINE Alu 1 137 -10 6 878 243 0 0 0 chr11 38441736 38441763 -83402093 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 878 795 332 24 132 chr11 38441763 38442053 -83401803 + L1_Rod LINE L1 5457 5737 -110 6 878 382 314 28 9 chr11 38442068 38442174 -83401682 + B3 SINE B2 1 108 -108 6 878 410 385 36 34 chr11 38442573 38443049 -83400807 + Lx8 LINE L1 6991 7467 -6 6 878 21 36 0 0 chr11 38443056 38443084 -83400772 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 28 48 0 0 chr11 38443157 38443199 -83400657 + AT_rich Low_complexity Low_complexity 1 42 0 6 878 290 240 56 38 chr11 38443225 38443385 -83400471 + Lx4B LINE L1 6838 7049 -9 6 878 261 0 0 0 chr11 38443433 38443462 -83400394 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 878 777 110 0 0 chr11 38443462 38443606 -83400250 + (TG)n Simple_repeat Simple_repeat 2 146 0 6 878 578 273 100 63 chr11 38443892 38444306 -83399550 - L1MA6 LINE L1 -172 6128 5696 6 878 1828 156 12 59 chr11 38444326 38444667 -83399189 + RMER6C LTR ERVK 1 325 -365 6 878 403 269 9 28 chr11 38444746 38444853 -83399003 - B3A SINE B2 -91 107 3 6 878 1218 170 138 3 chr11 38445167 38445450 -83398406 + RMER6C LTR ERVK 370 690 0 6 878 1168 50 0 0 chr11 38445779 38445920 -83397936 + B1_Mus2 SINE Alu 1 141 -6 6 878 31 44 0 0 chr11 38446430 38446475 -83397381 + AT_rich Low_complexity Low_complexity 1 45 0 6 878 1588 238 99 3 chr11 38446887 38447249 -83396607 + MTC LTR MaLR 1 397 -24 6 878 333 0 0 0 chr11 38448745 38448782 -83395074 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 878 416 266 47 34 chr11 38448809 38448957 -83394899 - B3A SINE B2 -48 150 1 6 878 204 283 36 36 chr11 38450416 38450471 -83393385 - L2a LINE L2 -12 3414 3360 6 878 337 73 29 29 chr11 38451439 38451509 -83392347 + (CAAAAA)n Simple_repeat Simple_repeat 3 72 0 6 878 354 186 0 0 chr11 38451688 38451758 -83392098 + URR1B DNA MER1_type 68 137 -88 6 878 402 257 48 19 chr11 38451750 38451853 -83392003 - B3 SINE B2 -109 107 2 6 878 369 0 0 0 chr11 38451938 38451979 -83391877 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 878 250 312 40 50 chr11 38452001 38452102 -83391754 + B4A SINE B4 6 105 -187 6 878 1852 173 19 77 chr11 38453856 38454232 -83389624 + ORR1B1 LTR MaLR 41 394 0 6 878 372 301 6 6 chr11 38454233 38454400 -83389456 + (TA)n Simple_repeat Simple_repeat 2 168 0 6 878 1070 76 7 7 chr11 38454871 38455016 -83388840 - B1_Mm SINE Alu -2 145 1 6 878 373 182 12 49 chr11 38455069 38455150 -83388706 + HAL1-3A_ME LINE L1 1972 2049 -809 6 878 384 83 23 45 chr11 38455150 38455238 -83388618 + (CAGAGA)n Simple_repeat Simple_repeat 3 88 0 6 878 320 148 16 0 chr11 38455244 38455305 -83388551 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 878 703 293 94 46 chr11 38455477 38455849 -83388007 + Lx8 LINE L1 6198 6587 -886 6 878 327 342 138 27 chr11 38455917 38456178 -83387678 + Lx8 LINE L1 7096 7385 -88 6 878 31457 91 15 2 chr11 38456476 38461783 -83382073 + L1Md_F2 LINE L1 214 5585 -298 6 878 7818 62 1 0 chr11 38461784 38462777 -83381079 + L1Md_F2 LINE L1 5587 6580 -2 6 878 316 341 0 21 chr11 38463043 38463136 -83380720 - B1F1 SINE Alu -58 91 1 6 878 1059 90 0 0 chr11 38463241 38463385 -83380471 + B1_Mus1 SINE Alu 5 148 0 6 878 214 73 0 47 chr11 38463390 38463433 -83380423 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 6 878 29 0 0 0 chr11 38463440 38463469 -83380387 + AT_rich Low_complexity Low_complexity 1 29 0 6 878 392 333 7 0 chr11 38463545 38463692 -83380164 - B1_Mur1 SINE Alu 0 149 2 6 878 27 49 0 0 chr11 38463855 38463896 -83379960 + AT_rich Low_complexity Low_complexity 1 41 0 6 878 373 272 51 34 chr11 38463937 38464055 -83379801 - B4A SINE B4 0 292 173 6 878 527 320 85 39 chr11 38464119 38464577 -83379279 + L1M4 LINE L1 4076 4554 -1592 6 878 4783 184 87 23 chr11 38464591 38465238 -83378618 + RLTR25A LTR ERVK 1 716 -387 6 878 3107 58 5 0 chr11 38465238 38465637 -83378219 + L1Md_F2 LINE L1 6182 6582 0 6 878 4783 184 87 23 chr11 38465637 38466026 -83377830 + RLTR25A LTR ERVK 717 1103 0 6 878 260 316 75 23 chr11 38466171 38466385 -83377471 + L1M4 LINE L1 4697 4921 -1225 6 878 1488 154 72 31 chr11 38466759 38467148 -83376708 - RMER17C LTR ERVK -5 405 1 6 878 465 238 68 113 chr11 38467172 38467437 -83376419 - RMER2 LTR ERV1 -27 540 288 6 878 28 0 0 0 chr11 38467466 38467494 -83376362 + AT_rich Low_complexity Low_complexity 1 28 0 6 878 417 286 0 18 chr11 38467514 38467628 -83376228 - RMER2 LTR ERV1 -451 116 5 6 878 253 333 11 0 chr11 38467660 38467778 -83376078 + (TATATG)n Simple_repeat Simple_repeat 1 119 0 6 878 1023 109 7 7 chr11 38468207 38468355 -83375501 - B1_Mus1 SINE Alu 0 148 1 6 878 1357 259 47 39 chr11 38468416 38468825 -83375031 + Lx6 LINE L1 292 703 -7025 6 878 242 200 42 28 chr11 38468882 38468954 -83374902 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 6 878 13286 212 53 44 chr11 38469042 38469645 -83374211 + Lx6 LINE L1 778 1428 -4452 6 878 191 36 36 0 chr11 38469645 38469673 -83374183 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 878 13286 209 60 120 chr11 38469673 38470171 -83373685 + Lx6 LINE L1 1429 1967 -3913 6 878 5368 112 38 38 chr11 38470171 38471060 -83372796 + Lx3A LINE L1 6077 6965 -16 6 878 288 0 0 0 chr11 38471062 38471094 -83372762 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 6 878 13286 209 60 120 chr11 38471094 38471334 -83372522 + Lx6 LINE L1 1968 2209 -3671 6 878 261 0 0 0 chr11 38471334 38471363 -83372493 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 878 13286 209 60 120 chr11 38471363 38471623 -83372233 + Lx6 LINE L1 2210 2469 -3411 6 878 189 107 0 0 chr11 38471623 38471651 -83372205 + (CAA)n Simple_repeat Simple_repeat 3 30 0 6 878 13286 209 60 120 chr11 38471651 38472354 -83371502 + Lx6 LINE L1 2470 2807 -3073 6 878 5927 55 1 0 chr11 38472354 38473088 -83370768 + L1Md_F2 LINE L1 5836 6570 -12 6 878 13286 209 60 120 chr11 38473088 38475693 -83368163 + Lx6 LINE L1 2808 5439 -441 6 878 192 77 0 0 chr11 38475693 38475719 -83368137 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 878 13286 209 60 120 chr11 38475719 38475979 -83367877 + Lx6 LINE L1 5440 5731 -149 6 878 7248 56 0 0 chr11 38475979 38476883 -83366973 + L1Md_T LINE L1 5679 6582 0 6 878 13286 218 70 135 chr11 38476883 38477158 -83366698 + Lx6 LINE L1 5732 5959 -1737 6 878 749 31 0 10 chr11 38477158 38477255 -83366601 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 6 878 614 262 116 140 chr11 38477255 38477306 -83366550 + Lx6 LINE L1 5960 6031 -1665 6 878 1553 92 0 5 chr11 38478834 38479052 -83364804 + L1_Mm LINE L1 5003 5219 -664 7 878 498 117 21 7 chr11 38479052 38479157 -83364699 - ORR1B1 LTR MaLR -264 130 20 7 878 425 229 172 73 chr11 38479165 38479316 -83364540 - RMER10A LTR ERVL -265 177 12 7 878 2080 29 0 0 chr11 38479399 38479642 -83364214 - L1_Mus1 LINE L1 -735 5832 5590 7 878 3635 44 2 9 chr11 38479652 38480107 -83363749 + L1_Mus1 LINE L1 6115 6566 -1 7 878 2898 35 0 0 chr11 38480118 38480462 -83363394 + L1Md_F2 LINE L1 5243 5586 -297 7 878 7297 53 58 0 chr11 38480462 38481403 -83362453 + L1Md_F2 LINE L1 5587 6582 0 7 878 2547 154 38 2 chr11 38481403 38481852 -83362004 + Lx3_Mus LINE L1 6529 6993 -16 7 878 2591 182 2 54 chr11 38482131 38482652 -83361204 + RLTR19A LTR ERVK 1 494 -2 7 878 462 289 45 45 chr11 38482860 38482970 -83360886 - L1M2 LINE L1 -3229 2917 2806 7 878 3016 51 10 20 chr11 38482970 38483370 -83360486 + MTA_Mm LTR MaLR 1 396 0 7 878 462 305 8 37 chr11 38483370 38483549 -83360307 - L1M2 LINE L1 -3338 2805 2628 7 878 2481 155 137 97 chr11 38483808 38484471 -83359385 + RMER6C LTR ERVK 1 690 0 7 878 396 0 0 0 chr11 38484700 38484744 -83359112 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 878 539 282 76 8 chr11 38484759 38484891 -83358965 - RSINE1 SINE B4 -22 143 3 7 878 22 0 0 0 chr11 38485312 38485334 -83358522 + AT_rich Low_complexity Low_complexity 1 22 0 7 878 195 42 0 0 chr11 38486125 38486149 -83357707 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 878 590 145 0 9 chr11 38486868 38486979 -83356877 + GA-rich Low_complexity Low_complexity 1 110 0 7 878 1017 89 7 0 chr11 38490457 38490592 -83353264 + B1_Mus1 SINE Alu 2 137 -11 7 878 816 40 0 0 chr11 38490594 38490694 -83353162 + (GAA)n Simple_repeat Simple_repeat 2 101 0 7 878 1511 217 38 116 chr11 38491619 38492120 -83351736 + RMER4A LTR ERVK 5 466 0 7 878 260 282 25 127 chr11 38492600 38492718 -83351138 - PB1D7 SINE Alu 0 120 15 7 878 337 299 72 53 chr11 38496350 38496502 -83347354 - LTR16A1 LTR ERVL -85 371 217 7 878 494 203 8 0 chr11 38497400 38497528 -83346328 + CT-rich Low_complexity Low_complexity 2 130 0 7 878 279 314 20 0 chr11 38497691 38497793 -83346063 + MIR SINE MIR 110 213 -49 7 878 4118 41 23 4 chr11 38498023 38498542 -83345314 + L1Md_F3 LINE L1 6056 6584 0 7 878 595 333 9 108 chr11 38499079 38499291 -83344565 - B3A SINE B2 -25 191 1 7 878 222 37 0 0 chr11 38500003 38500030 -83343826 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 1 878 25 65 0 0 chr11 38500460 38500506 -83343350 + AT_rich Low_complexity Low_complexity 1 46 0 2 878 267 133 0 0 chr11 38500822 38500867 -83342989 + (A)n Simple_repeat Simple_repeat 1 45 0 3 878 22 35 0 0 chr11 38501793 38501822 -83342034 + AT_rich Low_complexity Low_complexity 1 29 0 4 878 1944 301 54 23 chr11 38501922 38502733 -83341123 + RCHARR1 DNA MER1_type 138 973 -1 5 878 1962 219 129 8 chr11 38504809 38505128 -83338728 + Lx5 LINE L1 6478 6820 -230 6 878 468 35 0 0 chr11 38505128 38505186 -83338670 + (CCTG)n Simple_repeat Simple_repeat 1 58 0 7 878 1962 219 129 8 chr11 38505186 38505257 -83338599 + Lx5 LINE L1 6821 6912 -138 6 878 657 38 0 0 chr11 38505257 38505337 -83338519 + (TC)n Simple_repeat Simple_repeat 1 80 0 8 878 306 0 0 0 chr11 38505337 38505370 -83338486 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 878 1962 219 129 8 chr11 38505370 38505487 -83338369 + Lx5 LINE L1 6913 7047 -3 6 878 24 77 0 0 chr11 38505604 38505656 -83338200 + AT_rich Low_complexity Low_complexity 1 52 0 1 878 957 313 76 12 chr11 38505697 38506027 -83337829 + Lx8 LINE L1 6265 6615 -858 1 878 317 143 52 35 chr11 38506913 38506971 -83336885 - HAL1-3A_ME LINE L1 -824 2034 1976 1 878 266 72 0 23 chr11 38509937 38509980 -83333876 + Lx3C LINE L1 6370 6411 -565 1 878 2099 215 15 22 chr11 38509966 38510500 -83333356 + Lx2B LINE L1 6489 6993 -4 1 878 246 360 151 30 chr11 38513097 38513263 -83330593 + B4A SINE B4 29 214 -78 1 878 255 304 11 11 chr11 38513303 38513396 -83330460 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 878 22 56 0 0 chr11 38513468 38513504 -83330352 + AT_rich Low_complexity Low_complexity 1 36 0 1 878 1498 172 34 113 chr11 38514185 38514538 -83329318 + ORR1A2 LTR MaLR 1 325 -2 1 878 313 355 91 22 chr11 38514678 38514908 -83328948 + LTR16A LTR ERVL 206 451 0 1 878 602 238 21 10 chr11 38517100 38517392 -83326464 + GA-rich Low_complexity Low_complexity 1 295 0 2 878 1451 268 185 13 chr11 38517552 38518081 -83325775 + Lx6 LINE L1 6839 7458 -2 2 878 5620 98 1 5 chr11 38518177 38518979 -83324877 - L1_Mus2 LINE L1 -325 5558 4760 2 878 7423 71 8 11 chr11 38518983 38520002 -83323854 + L1_Mus2 LINE L1 5551 6566 0 2 878 222 239 15 0 chr11 38520057 38520124 -83323732 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 2 878 579 53 0 0 chr11 38520125 38520200 -83323656 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 878 217 349 101 0 chr11 38520213 38520322 -83323534 - RSINE1 SINE B4 -44 121 2 2 878 1229 288 33 22 chr11 38521226 38521592 -83322264 + ORR1D2 LTR MaLR 1 370 0 2 878 199 94 45 45 chr11 38522014 38522081 -83321775 + T-rich Low_complexity Low_complexity 2 68 0 2 878 270 136 0 0 chr11 38522638 38522682 -83321174 + (T)n Simple_repeat Simple_repeat 1 44 0 2 878 509 228 81 65 chr11 38522682 38522930 -83320926 + Lx7 LINE L1 7443 7694 -2 2 878 7850 53 1 2 chr11 38523458 38524525 -83319331 - L1Md_F2 LINE L1 0 6582 5541 3 878 25 0 0 0 chr11 38525079 38525104 -83318752 + AT_rich Low_complexity Low_complexity 1 25 0 3 878 285 29 0 0 chr11 38525200 38525234 -83318622 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 878 201 227 0 0 chr11 38525287 38525331 -83318525 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 878 342 286 162 62 chr11 38526719 38526898 -83316958 + B3 SINE B2 2 198 0 3 878 282 159 0 0 chr11 38526996 38527065 -83316791 + T-rich Low_complexity Low_complexity 1 69 0 3 878 315 0 0 0 chr11 38527382 38527417 -83316439 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 878 237 216 73 117 chr11 38527417 38527664 -83316192 - RMER17A LTR ERVK -341 410 175 3 878 363 23 0 0 chr11 38528419 38528463 -83315393 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 878 2431 32 0 0 chr11 38530900 38531185 -83312671 - L1Md_F2 LINE L1 -15 6567 6283 3 878 1143 68 0 0 chr11 38531302 38531448 -83312408 + B1_Mm SINE Alu 2 147 0 4 878 2614 69 11 32 chr11 38531631 38532006 -83311850 - L1_Mus1 LINE L1 -1 6566 6200 4 878 480 18 0 0 chr11 38533592 38533649 -83310207 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 878 249 221 41 56 chr11 38533740 38533830 -83310026 + L2c LINE L2 3282 3386 -1 4 878 903 274 35 54 chr11 38534184 38534500 -83309356 + ORR1D1 LTR MaLR 5 314 -60 4 878 271 349 0 24 chr11 38534716 38534801 -83309055 - Arthur1A DNA Tip100 -85 92 10 4 878 210 272 23 80 chr11 38534839 38534927 -83308929 + MIR SINE MIR 74 156 -106 4 879 238 357 26 26 chr11 38535309 38535424 -83308432 + MIRm SINE MIR 161 275 -1 4 879 207 105 0 26 chr11 38535930 38535969 -83307887 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 879 182 325 83 61 chr11 38538413 38538593 -83305263 + MIRc SINE MIR 54 237 -31 4 879 227 226 122 67 chr11 38540282 38540372 -83303484 - MLT1A LTR MaLR -270 104 10 5 879 890 268 5 5 chr11 38540409 38540604 -83303252 + B3 SINE B2 9 203 -13 5 879 6271 144 35 14 chr11 38540747 38541845 -83302011 - Lx2B LINE L1 -6 6994 5873 5 879 207 354 29 58 chr11 38544351 38544489 -83299367 + MIRc SINE MIR 70 203 -65 5 879 1537 129 21 32 chr11 38545220 38545500 -83298356 - L1_Mus3 LINE L1 -6 6632 6356 5 879 628 12 25 0 chr11 38546260 38546341 -83297515 + (TAGA)n Simple_repeat Simple_repeat 1 83 0 5 879 409 266 109 83 chr11 38546502 38546695 -83297161 + B3A SINE B2 1 198 0 5 879 205 293 0 47 chr11 38547405 38547491 -83296365 + CT-rich Low_complexity Low_complexity 3 84 0 5 879 316 344 12 59 chr11 38547517 38547687 -83296169 + RSINE1 SINE B4 2 163 -2 5 879 216 0 0 0 chr11 38547693 38547717 -83296139 + (CACAA)n Simple_repeat Simple_repeat 1 24 0 5 879 360 0 0 0 chr11 38547746 38547786 -83296070 + (TAA)n Simple_repeat Simple_repeat 2 41 0 6 879 501 115 0 0 chr11 38549284 38549380 -83294476 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 879 25 0 0 0 chr11 38550484 38550509 -83293347 + AT_rich Low_complexity Low_complexity 1 25 0 6 879 684 182 0 0 chr11 38550705 38550837 -83293019 + (TA)n Simple_repeat Simple_repeat 2 133 0 6 879 710 347 101 26 chr11 38550934 38551469 -83292387 + MER97c DNA MER1_type? 108 682 -408 6 879 265 19 93 0 chr11 38551472 38551526 -83292330 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 879 3858 190 41 22 chr11 38551580 38552425 -83291431 - Lx3C LINE L1 -3 6973 6113 6 879 1077 223 13 104 chr11 38552527 38552707 -83291149 - Lx7 LINE L1 0 7696 7518 6 879 2526 143 28 11 chr11 38552707 38553174 -83290682 + Lx2 LINE L1 6523 6997 0 6 879 1077 223 13 104 chr11 38553174 38553368 -83290488 - Lx7 LINE L1 -179 7517 7356 6 879 37 39 0 0 chr11 38553400 38553451 -83290405 + AT_rich Low_complexity Low_complexity 1 51 0 6 879 327 305 10 10 chr11 38553488 38553584 -83290272 - B4 SINE B4 -196 96 1 7 879 481 331 0 0 chr11 38553812 38553939 -83289917 + ID_B1 SINE B4 87 213 -11 7 879 2922 149 29 15 chr11 38554120 38554639 -83289217 + Lx2 LINE L1 6461 6986 -11 7 879 251 241 11 46 chr11 38555063 38555150 -83288706 + CT-rich Low_complexity Low_complexity 3 86 0 7 879 726 272 45 22 chr11 38556403 38556598 -83287258 + B3 SINE B2 13 211 -5 7 879 645 247 155 0 chr11 38556676 38556915 -83286941 + Lx9 LINE L1 7337 7612 -32 7 879 3194 72 0 38 chr11 38556963 38557410 -83286446 - L1_Mus1 LINE L1 0 6567 6138 7 879 192 278 0 0 chr11 38559251 38559323 -83284533 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 879 23 0 0 0 chr11 38559717 38559740 -83284116 + AT_rich Low_complexity Low_complexity 1 23 0 7 879 2318 229 86 47 chr11 38560318 38561002 -83282854 + Lx6 LINE L1 6742 7452 -8 7 879 882 255 20 0 chr11 38561098 38561302 -83282554 + B3 SINE B2 9 216 0 8 879 1338 232 12 34 chr11 38561312 38561637 -83282219 + Lx5 LINE L1 6672 6989 -61 8 879 219 69 0 0 chr11 38561662 38561691 -83282165 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 8 879 21 36 0 0 chr11 38562062 38562090 -83281766 + AT_rich Low_complexity Low_complexity 1 28 0 8 879 360 0 0 0 chr11 38562274 38562314 -83281542 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 879 380 271 107 34 chr11 38562430 38562721 -83281135 - L1M5 LINE L1 -1519 4627 4316 8 879 192 152 0 0 chr11 38562859 38562892 -83280964 + T-rich Low_complexity Low_complexity 1 33 0 8 879 923 97 7 0 chr11 38562967 38563112 -83280744 + (CA)n Simple_repeat Simple_repeat 1 146 0 8 879 457 292 81 27 chr11 38563134 38563323 -83280533 + B3A SINE B2 14 203 -13 8 879 356 312 91 25 chr11 38563528 38563922 -83279934 - L1MC3 LINE L1 -4 7781 7362 8 879 21 0 0 0 chr11 38564028 38564049 -83279807 + AT_rich Low_complexity Low_complexity 1 21 0 9 879 2090 132 3 6 chr11 38564171 38564499 -83279357 + ORR1A2 LTR MaLR 1 327 0 9 879 993 255 74 87 chr11 38565273 38565677 -83278179 - MTD LTR MaLR -8 411 13 9 879 396 170 9 19 chr11 38565677 38565785 -83278071 + A-rich Low_complexity Low_complexity 5 111 0 9 879 900 194 194 0 chr11 38566065 38566245 -83277611 + B3 SINE B2 2 216 0 9 879 21 82 0 0 chr11 38566258 38566307 -83277549 + AT_rich Low_complexity Low_complexity 1 49 0 9 879 323 358 31 6 chr11 38566307 38566679 -83277177 + L1MB7 LINE L1 5711 6096 -88 9 879 230 400 0 11 chr11 38567923 38568014 -83275842 + B4A SINE B4 6 95 -197 9 879 561 342 0 6 chr11 38568616 38568775 -83275081 - B3 SINE B2 -57 159 2 9 879 186 241 18 53 chr11 38568990 38569047 -83274809 + MIRm SINE MIR 129 183 -93 9 879 1817 226 152 26 chr11 38569098 38569153 -83274703 + RMER4B LTR ERVK 15 67 -518 1 879 243 61 0 0 chr11 38569153 38569186 -83274670 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 879 1817 226 152 26 chr11 38569186 38569366 -83274490 + RMER4B LTR ERVK 68 261 -324 1 879 185 119 24 0 chr11 38569366 38569408 -83274448 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1 879 1817 226 152 26 chr11 38569408 38569676 -83274180 + RMER4B LTR ERVK 262 582 -3 1 879 469 215 115 0 chr11 38569678 38569808 -83274048 + MurERV4-int LTR ERVK 1 145 -5115 1 879 641 235 180 38 chr11 38569829 38570118 -83273738 + RMER4B LTR ERVK 256 585 0 1 879 3574 247 36 39 chr11 38570276 38571257 -83272599 + Lx7 LINE L1 6573 7550 -146 1 879 325 175 19 0 chr11 38571493 38571596 -83272260 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 1 879 26 30 0 0 chr11 38573379 38573412 -83270444 + AT_rich Low_complexity Low_complexity 1 33 0 1 879 186 143 0 0 chr11 38574355 38574390 -83269466 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 879 536 339 26 52 chr11 38574410 38574640 -83269216 - B4 SINE B4 -68 224 1 1 879 23 0 0 0 chr11 38575646 38575669 -83268187 + AT_rich Low_complexity Low_complexity 1 23 0 1 879 382 264 58 16 chr11 38575805 38575961 -83267895 - B4A SINE B4 -56 168 7 1 879 207 0 0 0 chr11 38576639 38576662 -83267194 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 879 269 365 56 26 chr11 38577619 38577850 -83266006 + MIRc SINE MIR 28 265 -3 1 879 21 36 0 0 chr11 38578495 38578523 -83265333 + AT_rich Low_complexity Low_complexity 1 28 0 1 879 761 298 21 0 chr11 38578955 38579146 -83264710 + B3 SINE B2 1 195 -21 1 879 267 79 0 0 chr11 38579162 38579200 -83264656 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 879 526 261 14 21 chr11 38579224 38579369 -83264487 + B1_Mur3 SINE Alu 5 148 -1 1 879 218 32 32 0 chr11 38579375 38579406 -83264450 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 879 342 308 0 61 chr11 38580673 38580787 -83263069 - B2_Mm2 SINE B2 -85 110 4 1 879 950 240 91 7 chr11 38580852 38581137 -83262719 + RMER1B Other Other 754 1062 -4 1 879 6755 102 78 3 chr11 38581568 38582883 -83260973 + L1_Mus3 LINE L1 5228 6638 0 1 879 750 220 0 0 chr11 38583068 38583245 -83260611 + A-rich Low_complexity Low_complexity 3 179 0 1 879 29 0 0 0 chr11 38583562 38583591 -83260265 + AT_rich Low_complexity Low_complexity 1 29 0 1 879 22 0 0 0 chr11 38584976 38584998 -83258858 + AT_rich Low_complexity Low_complexity 1 22 0 1 879 23 33 0 0 chr11 38585081 38585111 -83258745 + AT_rich Low_complexity Low_complexity 1 30 0 1 879 348 24 0 0 chr11 38586080 38586121 -83257735 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 879 180 0 0 0 chr11 38586265 38586285 -83257571 + (A)n Simple_repeat Simple_repeat 1 20 0 1 879 426 318 102 85 chr11 38588891 38589245 -83254611 + MER31B LTR ERV1 41 400 -66 1 879 24 0 0 0 chr11 38590083 38590107 -83253749 + AT_rich Low_complexity Low_complexity 1 24 0 1 879 1141 58 0 0 chr11 38590176 38590315 -83253541 + B1_Mus2 SINE Alu 4 142 -5 1 879 5169 40 0 0 chr11 38590788 38591405 -83252451 - L1Md_F2 LINE L1 -14 6568 5952 1 879 5066 72 10 0 chr11 38591405 38592089 -83251767 + L1_Mm LINE L1 3991 4681 -1202 1 879 244 202 123 107 chr11 38593556 38593575 -83250281 + RLTR25B LTR ERVK 386 406 -622 1 879 948 110 7 0 chr11 38593575 38593711 -83250145 + B1_Mus2 SINE Alu 1 137 -10 1 879 522 31 0 0 chr11 38593711 38593775 -83250081 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 879 501 17 0 0 chr11 38594082 38594140 -83249716 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 879 1117 273 58 17 chr11 38594477 38594838 -83249018 + MTD LTR MaLR 44 419 0 1 879 214 362 0 17 chr11 38594840 38594899 -83248957 - ID_B1 SINE B4 -89 135 78 1 879 305 284 125 19 chr11 38596173 38596277 -83247579 + RSINE1 SINE B4 51 165 0 1 879 1355 258 68 113 chr11 38596944 38597511 -83246345 + RMER15 LTR ERVL 1 539 -36 1 879 351 60 0 0 chr11 38597511 38597561 -83246295 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 879 1355 258 68 113 chr11 38597561 38597595 -83246261 + RMER15 LTR ERVL 540 575 0 1 879 420 20 0 0 chr11 38599200 38599249 -83244607 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 879 567 233 175 16 chr11 38599286 38599469 -83244387 + ORR1B2 LTR MaLR 1 212 -155 1 879 606 286 117 11 chr11 38600153 38600436 -83243420 - Lx8 LINE L1 -256 7217 6905 1 879 251 250 0 101 chr11 38600432 38600521 -83243335 + Lx8 LINE L1 6291 6370 -1103 1 879 214 271 17 0 chr11 38600637 38600696 -83243160 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 1 879 21 0 0 0 chr11 38600831 38600852 -83243004 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 776 57 9 0 chr11 38601073 38601179 -83242677 + (GA)n Simple_repeat Simple_repeat 1 107 0 1 879 198 150 0 0 chr11 38601231 38601271 -83242585 + (T)n Simple_repeat Simple_repeat 1 40 0 1 879 889 124 8 0 chr11 38601285 38601414 -83242442 - B1_Mus1 SINE Alu -8 140 11 1 879 207 378 36 0 chr11 38603295 38603406 -83240450 - MIRb SINE MIR -23 245 131 1 879 315 319 16 11 chr11 38605551 38605711 -83238145 + MIRb SINE MIR 21 179 -83 1 879 387 0 0 0 chr11 38606712 38606755 -83237101 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 879 333 304 15 85 chr11 38607400 38607601 -83236255 - MT2A LTR ERVL -4 529 343 1 879 364 392 48 31 chr11 38607604 38608023 -83235833 - MT2A LTR ERVL -107 426 1 1 879 22 0 0 0 chr11 38609007 38609029 -83234827 + AT_rich Low_complexity Low_complexity 1 22 0 1 879 1119 82 0 0 chr11 38609494 38609641 -83234215 - B1_Mus1 SINE Alu 0 148 2 1 879 197 83 0 27 chr11 38609675 38609694 -83234162 + (GAA)n Simple_repeat Simple_repeat 2 20 0 1 879 1056 146 0 0 chr11 38609694 38609872 -83233984 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 879 197 83 0 27 chr11 38609872 38609889 -83233967 + (GAA)n Simple_repeat Simple_repeat 3 19 0 1 879 450 0 0 0 chr11 38609889 38609939 -83233917 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 879 28 0 0 0 chr11 38610360 38610388 -83233468 + AT_rich Low_complexity Low_complexity 1 28 0 1 879 3906 50 2 0 chr11 38611127 38611672 -83232184 - L1Md_F3 LINE L1 0 6584 6083 1 879 961 19 0 0 chr11 38611672 38611779 -83232077 - U6 snRNA snRNA 0 107 1 1 879 1120 147 66 0 chr11 38611854 38612052 -83231804 - Lx2 LINE L1 -12 6985 6775 1 879 1156 134 18 0 chr11 38612052 38612223 -83231633 - Lx2 LINE L1 -354 6643 6470 1 879 212 171 0 0 chr11 38612655 38612690 -83231166 + CT-rich Low_complexity Low_complexity 1 35 0 1 879 789 76 0 40 chr11 38612694 38612845 -83231011 + (TCTCTG)n Simple_repeat Simple_repeat 6 150 0 1 879 339 336 0 63 chr11 38614017 38614144 -83229712 - B3A SINE B2 -79 119 1 1 879 603 345 4 24 chr11 38614516 38614771 -83229085 + MER2 DNA MER2_type 93 342 -3 1 879 183 80 0 0 chr11 38615303 38615328 -83228528 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 879 420 267 76 0 chr11 38615490 38615621 -83228235 + MER104 DNA Tc2 33 173 -8 1 879 2008 194 77 14 chr11 38617651 38618094 -83225762 - RLTR11A2 LTR ERVK 0 527 57 1 879 488 246 8 0 chr11 38618090 38618208 -83225648 - RLTR15 LTR ERVK -240 119 1 1 879 1157 239 51 79 chr11 38618600 38619028 -83224828 - MTD LTR MaLR 0 419 4 1 879 419 279 109 48 chr11 38619671 38619818 -83224038 + B3A SINE B2 6 161 -37 1 879 471 63 0 0 chr11 38619834 38619897 -83223959 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 879 309 310 112 37 chr11 38619929 38620090 -83223766 + MLT1F LTR MaLR 63 235 -313 1 879 28 48 0 0 chr11 38620639 38620681 -83223175 + AT_rich Low_complexity Low_complexity 1 42 0 1 879 668 321 71 17 chr11 38620696 38621174 -83222682 - L1M4 LINE L1 -383 5795 5292 1 879 634 300 9 0 chr11 38621660 38621870 -83221986 + ID_B1 SINE B4 1 212 -12 1 879 494 31 16 0 chr11 38622088 38622152 -83221704 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 1 879 969 239 58 27 chr11 38622186 38622444 -83221412 - Lx4B LINE L1 -35 7023 6758 1 879 21 36 0 0 chr11 38622484 38622512 -83221344 + AT_rich Low_complexity Low_complexity 1 28 0 1 879 24 67 0 0 chr11 38622935 38622980 -83220876 + AT_rich Low_complexity Low_complexity 1 45 0 1 879 328 307 86 14 chr11 38623680 38623819 -83220037 - HAL1-3A_ME LINE L1 -740 2118 1970 1 879 193 277 21 0 chr11 38624284 38624331 -83219525 + L2a LINE L2 3297 3344 -82 1 879 298 324 9 0 chr11 38625267 38625372 -83218484 + GA-rich Low_complexity Low_complexity 2 107 0 1 879 803 325 102 25 chr11 38627040 38627612 -83216244 + Lx8 LINE L1 6849 7464 -9 1 879 312 70 0 0 chr11 38627910 38627953 -83215903 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 879 462 163 0 0 chr11 38628162 38628237 -83215619 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 1 879 423 0 0 0 chr11 38628237 38628284 -83215572 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 879 462 163 0 0 chr11 38628284 38628294 -83215562 + (TATATG)n Simple_repeat Simple_repeat 6 15 0 1 879 210 171 0 0 chr11 38628388 38628429 -83215427 + T-rich Low_complexity Low_complexity 1 41 0 1 879 2876 127 24 20 chr11 38628435 38628934 -83214922 - Lx3A LINE L1 -6 6975 6475 1 879 4750 90 4 10 chr11 38628934 38629622 -83214234 + L1_Mur1 LINE L1 4712 5395 -491 1 879 31 0 0 0 chr11 38629881 38629912 -83213944 + AT_rich Low_complexity Low_complexity 1 31 0 1 879 321 283 185 22 chr11 38629982 38630018 -83213838 - B3 SINE B2 -1 215 180 1 879 281 26 0 26 chr11 38630018 38630057 -83213799 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 879 321 283 185 22 chr11 38630057 38630204 -83213652 - B3 SINE B2 -37 179 4 1 879 23 33 0 0 chr11 38630334 38630364 -83213492 + AT_rich Low_complexity Low_complexity 1 30 0 1 879 249 250 0 0 chr11 38630718 38630774 -83213082 + GA-rich Low_complexity Low_complexity 3 58 0 1 879 392 302 0 36 chr11 38630776 38630886 -83212970 + B1_Mur2 SINE Alu 1 106 -43 2 879 243 103 0 0 chr11 38630887 38630926 -83212930 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 879 933 167 0 12 chr11 38633246 38633416 -83210440 + URR1B DNA MER1_type 58 225 0 2 879 408 258 11 0 chr11 38633745 38633838 -83210018 - ID_B1 SINE B4 -8 216 123 2 879 573 115 0 0 chr11 38634002 38634098 -83209758 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 879 219 383 77 13 chr11 38634207 38634363 -83209493 - B4A SINE B4 -117 175 10 2 879 416 350 0 7 chr11 38634400 38634544 -83209312 + B3A SINE B2 2 144 -54 2 879 621 76 0 0 chr11 38634544 38634636 -83209220 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 879 26 0 0 0 chr11 38634802 38634828 -83209028 + AT_rich Low_complexity Low_complexity 1 26 0 2 879 369 164 0 0 chr11 38635652 38635755 -83208101 + polypyrimidine Low_complexity Low_complexity 1 103 0 2 879 765 181 11 6 chr11 38635756 38635934 -83207922 + CT-rich Low_complexity Low_complexity 2 180 0 2 879 240 111 0 0 chr11 38635936 38635972 -83207884 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2 879 1739 239 88 3 chr11 38635972 38636358 -83207498 - Lx5 LINE L1 -16 7034 6616 2 879 205 353 22 43 chr11 38637015 38637154 -83206702 + MIRb SINE MIR 116 251 -17 2 879 208 200 62 0 chr11 38637232 38637312 -83206544 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 879 4202 108 52 1 chr11 38640130 38640786 -83203070 - L1_Mm LINE L1 -765 5118 4430 2 879 1879 104 17 14 chr11 38640788 38641081 -83202775 + L1_Mus3 LINE L1 6339 6632 -6 2 879 22 0 0 0 chr11 38641084 38641106 -83202750 + AT_rich Low_complexity Low_complexity 1 22 0 2 879 25 51 0 0 chr11 38642393 38642432 -83201424 + AT_rich Low_complexity Low_complexity 1 39 0 2 879 3171 263 36 32 chr11 38643178 38644059 -83199797 - Lx6 LINE L1 -1 7459 6575 2 879 22 35 0 0 chr11 38645053 38645082 -83198774 + AT_rich Low_complexity Low_complexity 1 29 0 2 879 31 0 0 0 chr11 38645193 38645224 -83198632 + AT_rich Low_complexity Low_complexity 1 31 0 2 879 7278 141 11 1 chr11 38645230 38646938 -83196918 - Lx LINE L1 -7 6647 4925 2 879 3176 171 0 5 chr11 38646937 38647496 -83196360 - L1_Mur2 LINE L1 -1422 4455 3900 2 879 438 323 116 58 chr11 38647713 38647989 -83195867 + MER67D LTR ERV1 110 401 -113 2 879 537 192 0 0 chr11 38648842 38648967 -83194889 + (TA)n Simple_repeat Simple_repeat 2 126 0 2 879 2161 40 11 0 chr11 38651375 38651648 -83192208 + L1Md_F3 LINE L1 5865 6140 -444 2 879 183 170 0 0 chr11 38651981 38652028 -83191828 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 879 441 335 95 135 chr11 38653243 38653622 -83190234 + MTD LTR MaLR 1 364 -55 2 879 279 93 0 0 chr11 38653646 38653689 -83190167 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 879 1440 321 45 12 chr11 38655505 38655827 -83188029 - Lx6 LINE L1 0 7460 7127 2 879 513 0 0 0 chr11 38655827 38655884 -83187972 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 879 1440 321 45 12 chr11 38655884 38656074 -83187782 - Lx6 LINE L1 -334 7126 6933 2 879 234 128 0 25 chr11 38656074 38656114 -83187742 + Lx7 LINE L1 6292 6330 -1366 2 879 736 302 36 49 chr11 38657093 38657340 -83186516 + B4A SINE B4 27 270 -22 2 879 483 190 0 0 chr11 38657980 38658117 -83185739 + (TAA)n Simple_repeat Simple_repeat 1 137 0 2 879 1061 106 0 0 chr11 38658135 38658277 -83185579 - B1_Mus2 SINE Alu -5 142 1 2 879 330 26 0 0 chr11 38658552 38658591 -83185265 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 879 693 85 0 0 chr11 38658607 38658713 -83185143 + (GA)n Simple_repeat Simple_repeat 2 107 0 2 879 209 321 74 0 chr11 38658756 38658837 -83185019 + MIR SINE MIR 78 164 -98 2 879 2611 54 15 0 chr11 38662710 38663046 -83180810 + L1_Mus1 LINE L1 6225 6565 -2 2 879 324 316 81 37 chr11 38663951 38664112 -83179744 + MLT1H1 LTR MaLR 386 553 -2 2 879 236 292 0 14 chr11 38664711 38664784 -83179072 + GA-rich Low_complexity Low_complexity 2 73 0 2 879 245 274 24 12 chr11 38664894 38664979 -83178877 + L1M5 LINE L1 5727 5812 -361 2 879 322 331 139 10 chr11 38665531 38665777 -83178079 - HAL1-3A_ME LINE L1 -419 2439 2279 2 880 210 338 52 0 chr11 38667461 38667538 -83176318 + B1F SINE Alu 42 122 -27 2 880 27 0 0 0 chr11 38668444 38668471 -83175385 + AT_rich Low_complexity Low_complexity 1 27 0 2 880 21 36 0 0 chr11 38669974 38670002 -83173854 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 3092 76 42 13 chr11 38671638 38672089 -83171767 - L1_Mus2 LINE L1 0 6566 6103 2 880 477 0 0 0 chr11 38673016 38673069 -83170787 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 880 431 339 149 18 chr11 38676322 38676550 -83167306 + Lx8 LINE L1 7122 7379 -94 2 880 21 0 0 0 chr11 38676607 38676628 -83167228 + AT_rich Low_complexity Low_complexity 1 21 0 2 880 325 312 74 18 chr11 38678054 38678217 -83165639 + MER58A DNA MER1_type 42 213 -11 2 880 228 135 0 0 chr11 38678314 38678351 -83165505 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 880 447 275 56 0 chr11 38678365 38678507 -83165349 + GA-rich Low_complexity Low_complexity 2 151 0 2 880 3882 189 42 21 chr11 38679252 38680110 -83163746 + Lx7 LINE L1 4477 5353 -527 2 880 2337 109 9 71 chr11 38680110 38680535 -83163321 + L1_Mus3 LINE L1 6239 6637 -1 2 880 3882 189 42 21 chr11 38680535 38680561 -83163295 + Lx7 LINE L1 5354 5379 -501 2 880 1146 276 53 30 chr11 38680581 38681047 -83162809 + Lx7 LINE L1 5609 6091 -959 2 880 720 219 40 40 chr11 38681181 38681405 -83162451 + Lx7 LINE L1 7471 7694 -2 2 880 301 135 40 0 chr11 38681543 38681617 -83162239 + GA-rich Low_complexity Low_complexity 2 78 0 2 880 576 244 7 22 chr11 38681620 38681758 -83162098 + B1_Mus1 SINE Alu 2 137 -11 2 880 342 293 10 10 chr11 38682922 38683022 -83160834 - Lx8 LINE L1 -184 7289 7190 2 880 388 333 22 7 chr11 38684066 38684202 -83159654 - B1_Mur1 SINE Alu -10 139 2 2 880 31 44 0 0 chr11 38684505 38684550 -83159306 + AT_rich Low_complexity Low_complexity 1 45 0 2 880 812 298 44 16 chr11 38684918 38685170 -83158686 + MTC LTR MaLR 163 421 0 2 880 21 36 0 0 chr11 38685701 38685729 -83158127 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 28 0 0 0 chr11 38686157 38686185 -83157671 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 230 95 24 0 chr11 38686842 38686884 -83156972 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 880 27 29 0 0 chr11 38687012 38687046 -83156810 + AT_rich Low_complexity Low_complexity 1 34 0 2 880 404 360 7 62 chr11 38687218 38687363 -83156493 + RSINE1 SINE B4 1 137 -28 2 880 405 0 0 0 chr11 38687364 38687409 -83156447 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 880 240 35 0 0 chr11 38687411 38687440 -83156416 + (CCA)n Simple_repeat Simple_repeat 3 31 0 2 880 207 0 0 0 chr11 38688581 38688604 -83155252 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 880 341 301 72 0 chr11 38689845 38689928 -83153928 + PB1D10 SINE Alu 6 94 -23 2 880 345 325 75 41 chr11 38690419 38690714 -83153142 + Charlie14a DNA MER1_type 151 455 -709 2 880 23 0 0 0 chr11 38690775 38690798 -83153058 + AT_rich Low_complexity Low_complexity 1 23 0 2 880 12064 26 1 0 chr11 38690906 38692992 -83150864 - L1Md_T LINE L1 0 6582 4495 2 880 730 123 15 0 chr11 38693504 38693634 -83150222 + (GA)n Simple_repeat Simple_repeat 1 132 0 2 880 212 143 24 0 chr11 38694132 38694174 -83149682 + CT-rich Low_complexity Low_complexity 5 47 0 2 880 1643 221 65 20 chr11 38695185 38695583 -83148273 + Lx5 LINE L1 6635 7050 0 2 880 370 314 110 39 chr11 38695705 38696086 -83147770 + Lx9 LINE L1 7212 7619 -25 2 880 520 73 12 12 chr11 38696093 38696176 -83147680 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 880 3231 71 5 9 chr11 38696211 38696650 -83147206 - L1_Mus3 LINE L1 0 6638 6202 2 880 392 317 293 40 chr11 38696665 38696938 -83146918 + MLT2F LTR ERVL 9 350 -313 2 880 437 310 97 35 chr11 38697030 38697189 -83146667 + ERVL-int LTR ERVL 4115 4274 -1483 2 880 186 43 0 0 chr11 38697189 38697212 -83146644 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 880 437 310 97 35 chr11 38697212 38697363 -83146493 + ERVL-int LTR ERVL 4275 4444 -1313 2 880 3800 48 2 4 chr11 38698063 38698539 -83145317 + L1Md_F2 LINE L1 6096 6570 -12 2 880 354 390 46 55 chr11 38698829 38699176 -83144680 + MLT2F LTR ERVL 251 594 -69 2 880 244 133 0 43 chr11 38699231 38699278 -83144578 + MLT2F LTR ERVL 511 555 -8 2 880 1086 75 0 26 chr11 38699641 38699792 -83144064 + B1_Mus2 SINE Alu 1 147 0 2 880 304 345 20 34 chr11 38700294 38700441 -83143415 - L2 LINE L2 -534 2885 2741 2 880 1075 171 15 10 chr11 38700608 38700809 -83143047 + URR1A DNA MER1_type 24 225 -1 2 880 423 0 0 0 chr11 38701084 38701131 -83142725 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 880 310 365 62 39 chr11 38702106 38702365 -83141491 - LFSINE_Vert SINE SINE -6 453 189 2 880 236 154 19 0 chr11 38702397 38702449 -83141407 + A-rich Low_complexity Low_complexity 3 55 0 2 880 324 70 0 0 chr11 38702638 38702681 -83141175 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 880 209 33 33 0 chr11 38702681 38702710 -83141146 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 880 227 329 25 0 chr11 38703521 38703600 -83140256 + MER20 DNA MER1_type 2 82 -137 2 880 236 352 37 9 chr11 38703838 38703947 -83139909 + ID4_ SINE ID 15 126 -26 2 880 1058 99 0 0 chr11 38707116 38707257 -83136599 + B1_Mus2 SINE Alu 3 143 -4 2 880 216 0 0 0 chr11 38707257 38707281 -83136575 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 880 219 88 0 0 chr11 38707489 38707523 -83136333 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 2 880 213 378 14 0 chr11 38707781 38707855 -83136001 + ID2 SINE ID 5 79 -4 2 880 888 303 118 29 chr11 38708028 38708443 -83135413 + MLT1C LTR MaLR 1 452 -15 3 880 195 115 18 55 chr11 38708481 38708536 -83135320 + GA-rich Low_complexity Low_complexity 3 55 0 3 880 2098 146 0 39 chr11 38708655 38709062 -83134794 - L1_Mur1 LINE L1 -2395 3491 3101 3 880 2776 137 18 34 chr11 38709078 38709179 -83134677 - Lx3A LINE L1 -522 6459 6374 3 880 999 104 14 7 chr11 38709179 38709324 -83134532 - B1_Mm SINE Alu 0 147 2 3 880 2776 137 18 34 chr11 38709324 38709730 -83134126 - Lx3A LINE L1 -608 6373 5960 3 880 2998 119 37 6 chr11 38709730 38710220 -83133636 + Lx3A LINE L1 6469 6973 -8 3 880 2339 86 15 6 chr11 38710248 38710587 -83133269 - L1_Mus3 LINE L1 0 6638 6297 3 880 2814 98 0 0 chr11 38710587 38710966 -83132890 + L1_Mus3 LINE L1 5945 6323 -315 3 880 27 29 0 0 chr11 38710972 38711006 -83132850 + AT_rich Low_complexity Low_complexity 1 34 0 3 880 181 250 141 43 chr11 38713425 38713517 -83130339 - L4 LINE RTE -1574 455 355 3 880 423 0 0 0 chr11 38714278 38714325 -83129531 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 880 5100 223 41 13 chr11 38714397 38715628 -83128228 - Lx2B LINE L1 0 7000 5736 3 880 306 389 10 15 chr11 38715647 38715843 -83128013 - Lx9 LINE L1 -272 7372 7178 3 880 41165 7 0 1 chr11 38716153 38723147 -83120709 - L1Md_A LINE L1 0 6582 1 3 880 24 0 0 0 chr11 38723150 38723174 -83120682 + AT_rich Low_complexity Low_complexity 1 24 0 3 880 716 218 6 0 chr11 38723497 38723671 -83120185 + (CA)n Simple_repeat Simple_repeat 2 176 0 3 880 1090 311 71 17 chr11 38723779 38724243 -83119613 - Lx7 LINE L1 -1012 6684 6196 3 880 1168 297 95 16 chr11 38724252 38724745 -83119111 + Lx7 LINE L1 6697 7228 -468 3 880 219 182 18 0 chr11 38724753 38724808 -83119048 + A-rich Low_complexity Low_complexity 4 59 0 3 880 505 303 36 36 chr11 38725791 38725986 -83117870 + B3A SINE B2 2 196 -2 3 880 26 0 0 0 chr11 38726135 38726161 -83117695 + AT_rich Low_complexity Low_complexity 1 26 0 3 880 1522 219 57 65 chr11 38726213 38726580 -83117276 + ORR1C1 LTR MaLR 1 364 -14 3 880 4337 244 127 49 chr11 38726612 38728012 -83115844 + ORR1C1-int LTR MaLR 1 1509 0 3 880 435 247 0 0 chr11 38728014 38728111 -83115745 + ORR1C1 LTR MaLR 3 99 -279 3 880 447 79 0 0 chr11 38728114 38728177 -83115679 + ORR1C1 LTR MaLR 314 376 -2 3 880 1192 332 13 3 chr11 38728433 38728817 -83115039 - RMER15 LTR ERVL -18 557 170 3 880 783 249 52 9 chr11 38728883 38729094 -83114762 - URR1A DNA MER1_type -6 220 1 3 880 564 245 6 74 chr11 38729094 38729253 -83114603 - RMER15 LTR ERVL -402 173 26 3 880 284 342 33 33 chr11 38729614 38729765 -83114091 + L2a LINE L2 3276 3426 0 3 880 185 250 0 0 chr11 38731218 38731258 -83112598 + L2 LINE L2 2393 2432 -987 3 880 21 82 0 0 chr11 38731489 38731538 -83112318 + AT_rich Low_complexity Low_complexity 1 49 0 3 880 6437 194 24 10 chr11 38731560 38733187 -83110669 + Lx2B LINE L1 5346 6998 -2 3 880 182 311 82 0 chr11 38733195 38733256 -83110600 + L2 LINE L2 2833 2898 -521 3 880 24 53 0 0 chr11 38733326 38733364 -83110492 + AT_rich Low_complexity Low_complexity 1 38 0 3 880 350 355 196 50 chr11 38734370 38735083 -83108773 + L1MD2 LINE L1 126 942 -5605 3 880 1094 84 0 0 chr11 38735148 38735290 -83108566 + B1_Mm SINE Alu 2 143 -4 3 880 213 39 0 0 chr11 38735292 38735318 -83108538 + (A)n Simple_repeat Simple_repeat 1 26 0 3 880 597 280 21 117 chr11 38735764 38736003 -83107853 + RMER15 LTR ERVL 346 561 -14 3 880 484 263 50 8 chr11 38736202 38736321 -83107535 + ETnERV2-int LTR ERVK 7070 7193 -213 3 880 234 81 0 0 chr11 38737540 38737577 -83106279 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 3 880 26 0 0 0 chr11 38737689 38737715 -83106141 + AT_rich Low_complexity Low_complexity 1 26 0 3 880 1135 81 0 0 chr11 38737738 38737886 -83105970 + B1_Mus1 SINE Alu 1 148 0 3 880 520 84 24 0 chr11 38737995 38738078 -83105778 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 3 880 228 211 0 0 chr11 38738417 38738493 -83105363 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 880 868 313 109 26 chr11 38739687 38740022 -83103834 + MTE2b LTR MaLR 3 378 -1 3 880 3807 321 52 36 chr11 38740037 38741542 -83102314 + MTE2b-int LTR MaLR 52 1580 0 3 880 1009 299 27 70 chr11 38741542 38741916 -83101940 + MTE2b LTR MaLR 1 358 -21 3 880 250 366 115 58 chr11 38742029 38742203 -83101653 + MER5A DNA MER1_type 1 184 -5 3 880 240 341 47 39 chr11 38742725 38742853 -83101003 + MER5B DNA MER1_type 50 178 0 3 880 24 85 0 0 chr11 38742960 38743019 -83100837 + AT_rich Low_complexity Low_complexity 1 59 0 3 880 6785 112 17 2 chr11 38743227 38744225 -83099631 + Lx LINE L1 5588 6600 -54 3 880 990 69 0 0 chr11 38744225 38744356 -83099500 + (GA)n Simple_repeat Simple_repeat 2 132 0 3 880 512 346 0 6 chr11 38744526 38744689 -83099167 - RSINE1 SINE B4 -2 163 2 3 880 200 244 79 79 chr11 38744719 38744808 -83099048 + L4 LINE RTE 1352 1440 -589 3 880 27 0 0 0 chr11 38745519 38745546 -83098310 + AT_rich Low_complexity Low_complexity 1 27 0 3 880 351 331 85 79 chr11 38746127 38746455 -83097401 + ORR1E LTR MaLR 29 358 -1 3 880 563 259 9 53 chr11 38746553 38746750 -83097106 + Lx6 LINE L1 6896 7073 -623 3 880 366 209 116 0 chr11 38746844 38746930 -83096926 + Lx6 LINE L1 7059 7154 -306 3 880 208 53 53 0 chr11 38746989 38747027 -83096829 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 880 1699 235 46 34 chr11 38747259 38747669 -83096187 + MTC LTR MaLR 7 421 0 3 880 22 0 0 0 chr11 38747677 38747699 -83096157 + AT_rich Low_complexity Low_complexity 1 22 0 3 880 1862 82 15 4 chr11 38747700 38747968 -83095888 + L1_Mus3 LINE L1 6365 6635 -3 3 880 345 47 0 0 chr11 38748421 38748464 -83095392 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 880 21 36 0 0 chr11 38750094 38750122 -83093734 + AT_rich Low_complexity Low_complexity 1 28 0 3 880 283 276 40 22 chr11 38750165 38750280 -83093576 - B1F1 SINE Alu -16 133 13 3 880 733 283 107 40 chr11 38750437 38750940 -83092916 + Lx9 LINE L1 5622 6197 -1276 3 880 240 86 0 0 chr11 38750940 38750975 -83092881 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 880 747 265 25 15 chr11 38750975 38751178 -83092678 + Lx9 LINE L1 6341 6545 -1099 3 880 201 108 0 0 chr11 38751659 38751696 -83092160 + (T)n Simple_repeat Simple_repeat 1 37 0 3 880 197 288 28 70 chr11 38752295 38752366 -83091490 - L3 LINE CR1 -2 4487 4420 3 880 291 241 0 12 chr11 38752953 38753033 -83090823 - RMER1C Other Other 0 1342 1264 3 880 908 241 24 73 chr11 38753050 38753337 -83090519 - RMER1C Other Other -136 1206 934 3 880 650 13 13 0 chr11 38753699 38753778 -83090078 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 880 1525 242 96 42 chr11 38754795 38755338 -83088518 + RMER15 LTR ERVL 1 572 -3 3 880 202 111 18 18 chr11 38755447 38755491 -83088365 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 3 880 1161 56 7 0 chr11 38755491 38755635 -83088221 - B1_Mus2 SINE Alu 0 147 3 3 880 202 111 18 18 chr11 38755635 38755645 -83088211 + (TTTTA)n Simple_repeat Simple_repeat 4 13 0 3 880 572 60 0 0 chr11 38757031 38757114 -83086742 + L1_Mus3 LINE L1 6550 6632 -6 3 880 22 0 0 0 chr11 38757800 38757822 -83086034 + AT_rich Low_complexity Low_complexity 1 22 0 3 880 446 267 16 8 chr11 38757870 38757991 -83085865 + L3 LINE CR1 3573 3694 -795 3 880 412 271 28 0 chr11 38758312 38758419 -83085437 - PB1D9 SINE Alu -9 111 2 3 880 360 0 0 0 chr11 38759926 38759966 -83083890 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 880 342 314 183 28 chr11 38760360 38760792 -83083064 + L1M4 LINE L1 2305 2803 -3343 3 880 26 0 0 0 chr11 38760869 38760895 -83082961 + AT_rich Low_complexity Low_complexity 1 26 0 3 880 345 128 12 37 chr11 38761219 38761300 -83082556 + GA-rich Low_complexity Low_complexity 2 80 0 3 880 372 338 116 24 chr11 38761461 38761840 -83082016 + L1M5 LINE L1 3183 3596 -2550 3 880 714 266 84 29 chr11 38762151 38762507 -83081349 + L1M4 LINE L1 3766 4137 -2009 3 880 225 0 0 0 chr11 38763230 38763255 -83080601 + (TGGGGG)n Simple_repeat Simple_repeat 4 28 0 3 880 407 85 0 0 chr11 38763255 38763314 -83080542 + L1_Mus2 LINE L1 6508 6566 0 3 880 219 278 0 0 chr11 38763354 38763408 -83080448 + T-rich Low_complexity Low_complexity 1 54 0 3 880 295 316 62 16 chr11 38764135 38764328 -83079528 - MER33 DNA MER1_type -112 212 11 3 880 387 356 88 7 chr11 38764401 38764548 -83079308 - RSINE1 SINE B4 -4 161 3 3 880 300 302 139 0 chr11 38764607 38764736 -83079120 - B1_Mur1 SINE Alu -1 148 2 3 880 843 292 40 88 chr11 38765142 38765240 -83078616 + MT2B LTR ERVL 240 338 -263 3 880 207 0 0 0 chr11 38765240 38765263 -83078593 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 880 843 292 40 88 chr11 38765263 38765540 -83078316 + MT2B LTR ERVL 339 597 -4 3 880 281 233 28 28 chr11 38765719 38765825 -83078031 + MYSERV6-int LTR ERVK 6396 6501 -2458 3 880 459 273 8 69 chr11 38765899 38766029 -83077827 + B1_Mm SINE Alu 18 139 -8 3 880 1434 246 82 87 chr11 38766199 38766243 -83077613 + MYSERV16_I-int LTR ERVK 6 43 -2283 3 880 1353 93 5 5 chr11 38766243 38766438 -83077418 + B2_Mm2 SINE B2 1 195 0 3 880 1434 245 83 86 chr11 38766438 38766578 -83077278 + MYSERV16_I-int LTR ERVK 44 176 -2150 3 880 2860 113 28 9 chr11 38766578 38767008 -83076848 + L1_Mus4 LINE L1 6188 6625 -11 3 880 1434 251 81 89 chr11 38767008 38767639 -83076217 + MYSERV16_I-int LTR ERVK 177 714 -1612 3 880 431 302 69 17 chr11 38767683 38767858 -83075998 + RMER4A LTR ERVK 257 440 -26 3 880 3287 231 63 38 chr11 38767860 38768953 -83074903 + MYSERV6-int LTR ERVK 7769 8888 -71 3 880 22 56 0 0 chr11 38768981 38769017 -83074839 + AT_rich Low_complexity Low_complexity 1 36 0 3 880 2022 149 18 6 chr11 38769058 38769395 -83074461 + RLTR15 LTR ERVK 3 343 -16 3 880 4499 223 30 61 chr11 38769405 38770301 -83073555 + MERVL_2A-int LTR ERVL 4542 5399 -362 3 880 357 24 0 0 chr11 38770301 38770343 -83073513 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 880 4499 223 30 61 chr11 38770343 38770631 -83073225 + MERVL_2A-int LTR ERVL 5400 5690 -71 3 880 535 218 8 8 chr11 38770631 38770765 -83073091 + MERVL_2A-int LTR ERVL 5628 5761 0 3 880 860 276 80 57 chr11 38770765 38771285 -83072571 + MT2A LTR ERVL 1 535 -20 3 880 260 111 22 0 chr11 38771311 38771356 -83072500 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 880 1411 171 38 8 chr11 38771491 38771756 -83072100 - Lx2 LINE L1 -2 6995 6723 3 880 258 267 0 13 chr11 38773103 38773179 -83070677 + MIR SINE MIR 178 252 -10 3 880 290 244 130 25 chr11 38774227 38774504 -83069352 + L1M2 LINE L1 2935 3240 -2903 3 880 2211 118 0 3 chr11 38774569 38774908 -83068948 + L1_Mus4 LINE L1 6299 6636 0 3 880 232 222 53 43 chr11 38775015 38775109 -83068747 + L1M2 LINE L1 3356 3450 -2693 3 880 278 259 78 35 chr11 38775125 38775241 -83068615 + RLTR25B LTR ERVK 389 509 -519 3 880 714 70 10 0 chr11 38775183 38775283 -83068573 + B1_Mus2 SINE Alu 47 147 0 3 880 1284 89 0 0 chr11 38775290 38775470 -83068386 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 880 638 304 26 23 chr11 38775492 38775810 -83068046 + L1M2 LINE L1 3511 3827 -2319 3 880 227 289 13 0 chr11 38775822 38775898 -83067958 + L1M2 LINE L1 5515 5591 -721 3 880 448 16 33 0 chr11 38775941 38776002 -83067854 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 880 915 193 122 0 chr11 38776930 38777127 -83066729 - URR1A DNA MER1_type 0 226 6 4 880 550 0 29 0 chr11 38778302 38778372 -83065484 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 880 182 37 37 0 chr11 38779977 38780004 -83063852 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 4 880 335 271 78 85 chr11 38780033 38780186 -83063670 + HAL1-3A_ME LINE L1 2287 2438 -420 4 880 379 110 77 0 chr11 38780196 38780287 -83063569 + GA-rich Low_complexity Low_complexity 3 100 0 4 880 640 259 79 7 chr11 38780287 38780427 -83063429 - B3A SINE B2 -46 152 3 4 880 1193 316 104 5 chr11 38780478 38781045 -83062811 + Lx6 LINE L1 6089 6711 -749 4 880 1329 277 115 26 chr11 38781233 38781693 -83062163 + Lx6 LINE L1 6708 7208 -252 4 880 1514 310 7 12 chr11 38782377 38782788 -83061068 + Lx5 LINE L1 6639 7047 -3 4 880 542 28 28 0 chr11 38783185 38783256 -83060600 + (TTTTA)n Simple_repeat Simple_repeat 3 75 0 4 880 6106 77 2 24 chr11 38783276 38784119 -83059737 - L1_Mus2 LINE L1 -2 6564 5740 4 880 233 331 103 16 chr11 38784128 38784254 -83059602 + B4A SINE B4 111 247 -45 4 880 333 0 0 0 chr11 38784308 38784345 -83059511 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 880 531 0 0 0 chr11 38784345 38784403 -83059453 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 880 800 291 5 10 chr11 38784422 38784620 -83059236 + B3 SINE B2 18 214 -2 4 880 318 239 51 32 chr11 38786542 38786698 -83057158 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 4 880 241 122 73 0 chr11 38786716 38786798 -83057058 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 4 880 318 387 0 0 chr11 38787112 38787223 -83056633 + ORR1E LTR MaLR 6 116 -243 4 880 580 306 7 20 chr11 38787543 38787693 -83056163 - RSINE1 SINE B4 -14 151 4 4 880 2207 233 29 2 chr11 38787716 38788341 -83055515 + Lx2B LINE L1 6281 6946 -62 4 880 338 61 20 0 chr11 38788345 38788394 -83055462 + (CAT)n Simple_repeat Simple_repeat 1 50 0 4 880 561 248 0 27 chr11 38788437 38788549 -83055307 - RMER20B LTR ERVK -3 624 516 4 880 1431 197 121 70 chr11 38788581 38788979 -83054877 - RMER20B LTR ERVK -209 418 1 4 880 16105 158 13 22 chr11 38789442 38790242 -83053614 + L1_Mus4 LINE L1 691 1481 -4402 4 880 1094 52 0 0 chr11 38790242 38790377 -83053479 + B1_Mus1 SINE Alu 1 135 -13 4 880 245 29 29 0 chr11 38790378 38790412 -83053444 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 880 16105 168 18 24 chr11 38790412 38790432 -83053424 + L1_Mus4 LINE L1 1482 1482 -4401 4 880 525 32 0 0 chr11 38790432 38790495 -83053361 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 880 16105 168 18 24 chr11 38790495 38793483 -83050373 + L1_Mus4 LINE L1 1482 4477 -1406 4 13 35385 46 0 3 chr11 38793482 38798722 -83045134 + L1Md_T LINE L1 271 5589 -297 4 881 8433 33 0 0 chr11 38798723 38799718 -83044138 + L1Md_T LINE L1 5591 6585 0 4 881 24 0 0 0 chr11 38799724 38799748 -83044108 + AT_rich Low_complexity Low_complexity 1 24 0 4 881 7940 142 34 6 chr11 38799748 38801885 -83041971 + L1_Mus4 LINE L1 4443 6632 -4 4 881 8160 115 56 15 chr11 38801865 38802737 -83041119 + Lx3A LINE L1 5132 6025 -956 4 881 477 0 0 0 chr11 38802737 38802790 -83041066 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 4 881 8160 133 27 27 chr11 38802790 38803727 -83040129 + Lx3A LINE L1 6026 6978 -3 4 881 31 76 0 0 chr11 38804427 38804493 -83039363 + AT_rich Low_complexity Low_complexity 1 66 0 4 881 556 353 58 16 chr11 38804493 38804683 -83039173 - B3A SINE B2 0 198 1 4 881 2036 232 39 65 chr11 38804758 38805329 -83038527 - RMER1C Other Other -1 1341 786 4 881 307 327 9 0 chr11 38805379 38805486 -83038370 - RMER1C Other Other -1213 129 22 4 881 2205 211 54 17 chr11 38805804 38806324 -83037532 - Lx5 LINE L1 -568 6482 5944 4 881 2187 230 71 19 chr11 38806310 38806842 -83037014 + Lx5 LINE L1 6475 7034 -16 4 881 239 254 112 90 chr11 38807497 38807631 -83036225 + MIR SINE MIR 1 137 -125 4 881 228 162 0 0 chr11 38808622 38808659 -83035197 + T-rich Low_complexity Low_complexity 1 37 0 4 881 195 42 0 0 chr11 38808986 38809010 -83034846 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 881 24 53 0 0 chr11 38809379 38809417 -83034439 + AT_rich Low_complexity Low_complexity 1 38 0 4 881 247 348 95 9 chr11 38809515 38809631 -83034225 + L2a LINE L2 3301 3426 0 4 881 2427 89 48 71 chr11 38809634 38810055 -83033801 - RLTR10A LTR ERVK 0 411 1 4 881 2153 35 0 0 chr11 38811698 38811956 -83031900 - L1Md_A LINE L1 0 6582 6325 4 881 23 0 0 0 chr11 38812317 38812340 -83031516 + AT_rich Low_complexity Low_complexity 1 23 0 4 881 872 304 31 69 chr11 38812842 38813091 -83030765 + Lx7 LINE L1 6944 7181 -515 4 881 857 10 10 0 chr11 38813091 38813193 -83030663 + (GAA)n Simple_repeat Simple_repeat 1 103 0 4 881 872 304 31 69 chr11 38813193 38813335 -83030521 + Lx7 LINE L1 7182 7320 -376 4 881 255 273 15 0 chr11 38813346 38813412 -83030444 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 881 204 175 0 87 chr11 38813402 38813471 -83030385 + T-rich Low_complexity Low_complexity 5 67 0 4 881 594 262 49 0 chr11 38813724 38813907 -83029949 + Lx6 LINE L1 7254 7445 -15 4 881 789 127 23 23 chr11 38813912 38814089 -83029767 + GA-rich Low_complexity Low_complexity 4 180 0 4 881 638 352 51 4 chr11 38814449 38814703 -83029153 + B4A SINE B4 4 269 -23 4 881 351 0 0 0 chr11 38814703 38814742 -83029114 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 881 2292 93 42 39 chr11 38816149 38816531 -83027325 + Lx LINE L1 6265 6647 -7 4 881 237 211 0 0 chr11 38816582 38816639 -83027217 + CT-rich Low_complexity Low_complexity 2 58 0 4 881 1122 135 130 0 chr11 38819928 38820128 -83023728 + URR1A DNA MER1_type 1 226 0 4 881 190 329 27 14 chr11 38820427 38820501 -83023355 + MIRc SINE MIR 79 153 -115 4 881 435 149 0 0 chr11 38820620 38820694 -83023162 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 4 881 358 212 140 10 chr11 38820694 38820794 -83023062 + HAL1-3A_ME LINE L1 1975 2087 -771 4 881 21 0 0 0 chr11 38820925 38820946 -83022910 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 220 182 22 36 chr11 38821805 38821944 -83021912 + GA-rich Low_complexity Low_complexity 1 136 0 4 881 276 15 42 83 chr11 38821955 38822027 -83021829 + (TTTTTG)n Simple_repeat Simple_repeat 5 73 0 4 881 554 93 12 0 chr11 38823237 38823323 -83020533 + (CA)n Simple_repeat Simple_repeat 1 87 0 4 881 32 0 0 0 chr11 38823912 38823944 -83019912 + AT_rich Low_complexity Low_complexity 1 32 0 4 881 378 296 29 64 chr11 38825036 38825059 -83018797 + CYRA11_Mm Unknown Y-chromosome 155 171 -446 4 881 1028 179 0 0 chr11 38825059 38825227 -83018629 - URR1A DNA MER1_type 0 226 59 4 881 218 81 27 0 chr11 38825508 38825545 -83018311 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 4 881 183 100 0 0 chr11 38825768 38825798 -83018058 + (A)n Simple_repeat Simple_repeat 1 30 0 4 881 269 51 26 0 chr11 38826081 38826120 -83017736 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 4 881 13078 83 3 1 chr11 38826863 38829362 -83014494 - L1Md_F2 LINE L1 0 6582 4107 4 881 568 150 19 12 chr11 38829532 38829694 -83014162 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 4 881 361 355 77 32 chr11 38830281 38830566 -83013290 + MLT1B LTR MaLR 21 318 -72 4 881 1582 115 41 4 chr11 38830924 38831169 -83012687 - L1_Mus1 LINE L1 -1174 4709 4456 4 881 1492 106 0 0 chr11 38831164 38831382 -83012474 + L1_Mus1 LINE L1 4709 4926 -957 4 881 27 0 0 0 chr11 38831382 38831409 -83012447 + AT_rich Low_complexity Low_complexity 1 27 0 4 881 1022 106 0 0 chr11 38831412 38831553 -83012303 - B1_Mm SINE Alu -6 141 1 4 881 2527 83 15 0 chr11 38831562 38831901 -83011955 - L1_Mus1 LINE L1 -1 6566 6223 4 881 1198 105 29 0 chr11 38832164 38832335 -83011521 - L1_Mus1 LINE L1 -311 6256 6081 4 881 7186 101 11 0 chr11 38832332 38833958 -83009898 + L1_Mus1 LINE L1 4928 6566 -1 4 881 234 0 0 0 chr11 38834042 38834068 -83009788 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 881 753 200 119 16 chr11 38834101 38834294 -83009562 - Lx2 LINE L1 -10 6987 6775 4 881 7045 145 24 10 chr11 38834292 38835479 -83008377 - Lx2 LINE L1 -352 6645 5446 4 881 2388 93 3 18 chr11 38835479 38835818 -83008038 - L1_Mus2 LINE L1 -6 6560 6227 4 881 7045 180 48 50 chr11 38835818 38835951 -83007905 - Lx2 LINE L1 -438 5445 5316 4 881 1082 89 0 14 chr11 38835951 38836099 -83007757 + B1_Mus2 SINE Alu 1 146 -1 4 881 7045 180 48 50 chr11 38836099 38837059 -83006797 - Lx2 LINE L1 -568 5315 4351 4 881 4404 173 12 8 chr11 38837059 38837908 -83005948 + Lx2 LINE L1 3491 4342 -1535 4 881 811 126 39 13 chr11 38838166 38838319 -83005537 + L1_Mus4 LINE L1 6479 6635 -1 4 881 302 265 30 10 chr11 38839003 38839102 -83004754 + L1MC5 LINE L1 7696 7796 -165 4 881 31 26 0 0 chr11 38839126 38839164 -83004692 + AT_rich Low_complexity Low_complexity 1 38 0 4 881 363 44 0 0 chr11 38839574 38839619 -83004237 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 881 235 111 0 0 chr11 38839845 38839881 -83003975 - U5 snRNA snRNA -75 41 6 4 881 6022 36 4 11 chr11 38839881 38840617 -83003239 + L1Md_F2 LINE L1 5840 6570 -12 4 881 354 204 0 0 chr11 38840698 38840786 -83003070 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 881 1440 166 29 29 chr11 38840881 38841197 -83002659 - Lx3B LINE L1 -5 6968 6653 4 881 1302 181 4 4 chr11 38841197 38841430 -83002426 + Lx3B LINE L1 6435 6667 -306 4 881 21 0 0 0 chr11 38842134 38842155 -83001701 + AT_rich Low_complexity Low_complexity 1 21 0 4 881 705 56 0 0 chr11 38843519 38843609 -83000247 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 881 610 290 66 69 chr11 38843953 38844242 -82999614 - MTEa LTR MaLR -3 376 89 4 881 323 305 30 30 chr11 38844892 38845066 -82998790 + B3A SINE B2 3 176 -19 4 881 780 179 7 0 chr11 38846113 38846258 -82997598 + URR1A DNA MER1_type 81 226 0 4 881 25 31 0 0 chr11 38846506 38846538 -82997318 + AT_rich Low_complexity Low_complexity 1 32 0 4 881 278 244 85 0 chr11 38848253 38848335 -82995521 - ID_B1 SINE B4 -28 196 108 4 881 22 35 0 0 chr11 38848342 38848371 -82995485 + AT_rich Low_complexity Low_complexity 1 29 0 4 881 3659 115 22 62 chr11 38848380 38849192 -82994664 - L1Md_F3 LINE L1 -1 6637 5908 4 881 259 333 0 139 chr11 38849402 38849517 -82994339 - RSINE1 SINE B4 0 165 67 4 881 294 50 0 0 chr11 38849751 38849791 -82994065 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 881 235 274 97 62 chr11 38849791 38849904 -82993952 + B3 SINE B2 94 210 -6 4 881 22 0 0 0 chr11 38850564 38850586 -82993270 + AT_rich Low_complexity Low_complexity 1 22 0 4 881 3034 82 0 0 chr11 38850825 38851230 -82992626 - L1_Mus2 LINE L1 -2 6564 6160 5 881 29 0 0 0 chr11 38851353 38851382 -82992474 + AT_rich Low_complexity Low_complexity 1 29 0 5 881 470 399 18 28 chr11 38851480 38851766 -82992090 + B4A SINE B4 7 289 -3 5 881 369 0 0 0 chr11 38851786 38851827 -82992029 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 881 190 358 45 0 chr11 38853888 38853955 -82989901 + MER5A DNA MER1_type 65 134 -55 5 881 681 258 111 29 chr11 38854740 38855019 -82988837 + Lx8 LINE L1 6841 7142 -331 5 881 453 276 46 46 chr11 38855826 38855978 -82987878 + ORR1D2 LTR MaLR 20 171 -188 5 881 317 288 0 9 chr11 38855992 38856097 -82987759 + CT-rich Low_complexity Low_complexity 1 104 0 5 881 675 105 22 45 chr11 38856097 38856276 -82987580 + (TCTCTG)n Simple_repeat Simple_repeat 6 180 0 5 881 456 286 106 21 chr11 38856341 38856530 -82987326 + ORR1D2 LTR MaLR 166 370 0 5 881 2471 177 31 5 chr11 38856929 38857605 -82986251 + Lx5 LINE L1 5399 6097 -953 5 881 1081 279 40 4 chr11 38857597 38857870 -82985986 + Lx5 LINE L1 6766 7048 -2 5 881 2038 135 36 25 chr11 38858549 38858906 -82984950 + Lx LINE L1 6288 6648 -6 5 881 408 71 0 0 chr11 38858974 38859030 -82984826 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 881 7770 56 14 5 chr11 38859206 38860684 -82983172 + L1Md_F2 LINE L1 4797 6292 -290 5 881 470 136 80 26 chr11 38860684 38860797 -82983059 + L1Md_F3 LINE L1 6465 6583 -1 5 881 727 285 32 44 chr11 38861554 38861870 -82981986 + L1MB8 LINE L1 5863 6174 -4 5 881 25 0 0 0 chr11 38862266 38862291 -82981565 + AT_rich Low_complexity Low_complexity 1 25 0 5 881 205 331 57 25 chr11 38863862 38864020 -82979836 + MIR SINE MIR 81 243 -19 5 881 324 0 0 0 chr11 38865709 38865745 -82978111 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 881 510 287 130 94 chr11 38865978 38866340 -82977516 + MTE2a LTR MaLR 3 377 -2 5 881 232 259 61 128 chr11 38866866 38867030 -82976826 - MER20 DNA MER1_type -25 194 42 5 881 252 382 41 0 chr11 38867210 38867380 -82976476 + B3A SINE B2 5 181 -17 5 881 21 0 0 0 chr11 38867393 38867414 -82976442 + AT_rich Low_complexity Low_complexity 1 21 0 5 881 23 33 0 0 chr11 38867902 38867932 -82975924 + AT_rich Low_complexity Low_complexity 1 30 0 5 881 500 309 18 82 chr11 38868462 38868681 -82975175 + B4A SINE B4 2 206 -86 5 881 318 26 0 0 chr11 38868768 38868807 -82975049 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5 881 360 0 0 0 chr11 38869092 38869132 -82974724 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 881 669 209 0 0 chr11 38870631 38870779 -82973077 + (TA)n Simple_repeat Simple_repeat 2 149 0 5 881 311 0 26 0 chr11 38871372 38871411 -82972445 + (TTG)n Simple_repeat Simple_repeat 3 42 0 5 881 387 0 0 0 chr11 38871708 38871751 -82972105 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 881 1190 133 129 0 chr11 38872437 38872647 -82971209 - Lx LINE L1 -3 6978 6742 5 881 3986 133 11 19 chr11 38872707 38873546 -82970310 - Lx LINE L1 -689 5965 5129 5 881 4215 118 29 35 chr11 38873547 38873794 -82970062 + Lx LINE L1 5966 6229 -425 5 881 2265 62 142 12 chr11 38873794 38874139 -82969717 - RLTR10 LTR ERVK 0 390 1 5 881 4215 118 29 35 chr11 38874139 38874579 -82969277 + Lx LINE L1 6230 6649 -5 5 881 23 68 0 0 chr11 38875151 38875195 -82968661 + AT_rich Low_complexity Low_complexity 1 44 0 5 881 25 0 0 0 chr11 38875285 38875310 -82968546 + AT_rich Low_complexity Low_complexity 1 25 0 5 881 909 246 31 17 chr11 38875435 38875691 -82968165 + Lx3C LINE L1 6575 6831 -166 5 881 25 0 0 0 chr11 38876502 38876527 -82967329 + AT_rich Low_complexity Low_complexity 1 25 0 5 881 21 0 0 0 chr11 38877437 38877458 -82966398 + AT_rich Low_complexity Low_complexity 1 21 0 5 881 308 188 14 0 chr11 38877744 38877813 -82966043 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 881 419 146 0 12 chr11 38877845 38877928 -82965928 - L1_Mus4 LINE L1 -9 6627 6546 5 881 549 44 0 0 chr11 38878300 38878368 -82965488 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 881 23 68 0 0 chr11 38879966 38880010 -82963846 + AT_rich Low_complexity Low_complexity 1 44 0 5 881 1074 88 0 0 chr11 38880036 38880183 -82963673 + B1_Mus2 SINE Alu 1 147 0 5 881 22 70 0 0 chr11 38881532 38881575 -82962281 + AT_rich Low_complexity Low_complexity 1 43 0 5 881 927 100 19 12 chr11 38882641 38882803 -82961053 + L1_Mus3 LINE L1 6471 6633 -5 5 881 543 78 0 0 chr11 38882822 38882899 -82960957 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 5 881 33 0 0 0 chr11 38882905 38882938 -82960918 + AT_rich Low_complexity Low_complexity 1 33 0 5 881 729 70 0 42 chr11 38883060 38883180 -82960676 + L1Md_F3 LINE L1 6470 6584 0 5 881 288 247 49 0 chr11 38883344 38883425 -82960431 - RMER6C LTR ERVK 0 690 606 5 881 264 169 27 27 chr11 38883459 38883532 -82960324 + A-rich Low_complexity Low_complexity 4 76 0 5 881 767 217 96 5 chr11 38883547 38883746 -82960110 - RMER6C LTR ERVK -122 568 352 5 881 698 178 89 0 chr11 38883810 38883956 -82959900 - RMER6C LTR ERVK -551 169 11 5 881 23 0 0 0 chr11 38884387 38884410 -82959446 + AT_rich Low_complexity Low_complexity 1 23 0 5 881 330 287 80 60 chr11 38884521 38884721 -82959135 + L1M4b LINE L1 1410 1613 -5721 5 881 255 31 0 0 chr11 38884722 38884754 -82959102 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 881 416 267 50 0 chr11 38884767 38884868 -82958988 - MTEa LTR MaLR -21 358 253 5 881 198 0 0 0 chr11 38885338 38885360 -82958496 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 881 582 15 0 0 chr11 38885703 38885770 -82958086 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 5 881 948 178 0 0 chr11 38885770 38885950 -82957906 + CT-rich Low_complexity Low_complexity 1 180 0 5 881 521 248 57 0 chr11 38885954 38886095 -82957761 - B1_Mur4 SINE Alu 0 150 2 5 881 803 9 45 0 chr11 38886253 38886364 -82957492 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 5 881 24 67 0 0 chr11 38886417 38886462 -82957394 + AT_rich Low_complexity Low_complexity 1 45 0 5 881 476 169 0 0 chr11 38886598 38886681 -82957175 + B1_Mus1 SINE Alu 2 84 -64 5 881 333 0 0 0 chr11 38886681 38886718 -82957138 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 881 423 74 37 0 chr11 38886718 38886798 -82957058 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 881 347 250 397 0 chr11 38887187 38887343 -82956513 + MER20 DNA MER1_type 2 219 0 5 881 26 0 0 0 chr11 38887369 38887395 -82956461 + AT_rich Low_complexity Low_complexity 1 26 0 5 881 522 288 177 44 chr11 38888908 38889315 -82954541 + L2 LINE L2 1732 2192 -1227 5 881 223 301 14 14 chr11 38889527 38889601 -82954255 + L2 LINE L2 2578 2651 -768 5 881 471 78 0 0 chr11 38890138 38890202 -82953654 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 881 231 227 0 0 chr11 38891145 38891242 -82952614 + (TA)n Simple_repeat Simple_repeat 1 97 0 5 881 1009 182 48 57 chr11 38891254 38891464 -82952392 + URR1B DNA MER1_type 13 220 -5 5 881 468 0 0 0 chr11 38892793 38892845 -82951011 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 881 1134 83 0 0 chr11 38892942 38893087 -82950769 + B1_Mus2 SINE Alu 1 145 -2 5 881 207 214 0 18 chr11 38893088 38893145 -82950711 + A-rich Low_complexity Low_complexity 5 60 0 5 881 215 278 32 38 chr11 38893487 38893644 -82950212 + GA-rich Low_complexity Low_complexity 5 160 0 5 881 638 121 9 0 chr11 38893805 38893921 -82949935 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 881 198 0 0 0 chr11 38894390 38894412 -82949444 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 5 881 780 207 44 29 chr11 38894573 38894777 -82949079 - Lx3_Mus LINE L1 0 7009 6803 5 881 2077 128 0 15 chr11 38894760 38895084 -82948772 + Lx3A LINE L1 6490 6808 -173 5 881 5407 103 17 11 chr11 38895825 38896645 -82947211 - L1_Mus3 LINE L1 0 6638 5814 5 881 248 88 0 0 chr11 38896645 38896679 -82947177 - L1_Mur1 LINE L1 -762 5124 5091 5 881 19181 122 20 11 chr11 38896677 38900508 -82943348 - L1VL1 LINE L1 -1600 4283 409 5 881 1110 257 99 0 chr11 38900841 38901113 -82942743 - MTD LTR MaLR -55 364 66 5 881 3010 63 5 8 chr11 38901114 38901511 -82942345 + MTA_Mm LTR MaLR 1 396 0 5 881 450 0 0 0 chr11 38901936 38901986 -82941870 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 881 306 0 0 0 chr11 38901996 38902030 -82941826 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 881 468 0 0 0 chr11 38902110 38902162 -82941694 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 881 567 0 0 0 chr11 38904287 38904350 -82939506 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 881 222 280 0 0 chr11 38904702 38904777 -82939079 + A-rich Low_complexity Low_complexity 1 75 0 5 881 201 39 0 0 chr11 38905767 38905793 -82938063 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 881 22 0 0 0 chr11 38906198 38906220 -82937636 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 558 0 0 0 chr11 38906307 38906369 -82937487 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 881 396 0 0 0 chr11 38907100 38907144 -82936712 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 881 1013 225 26 152 chr11 38907197 38907506 -82936350 + Lx6 LINE L1 6977 7246 -214 5 881 419 98 0 90 chr11 38907510 38907588 -82936268 + Lx2 LINE L1 6918 6988 -9 5 881 278 212 11 82 chr11 38908875 38908966 -82934890 + MamGypLTR1d LTR Gypsy 697 811 -2 5 881 30 0 0 0 chr11 38911647 38911677 -82932179 + AT_rich Low_complexity Low_complexity 1 30 0 5 881 404 267 96 0 chr11 38912450 38912596 -82931260 + FordPrefect DNA Tip100 976 1135 -548 5 881 5958 132 104 12 chr11 38913504 38914576 -82929280 + Lx3A LINE L1 5800 6970 -11 5 881 269 291 56 19 chr11 38914805 38914966 -82928890 - Lx9 LINE L1 -20 7624 7458 5 881 189 0 0 0 chr11 38914966 38914987 -82928869 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 881 275 345 118 0 chr11 38914987 38915106 -82928750 - Lx8 LINE L1 -142 7331 7199 5 881 1118 69 7 0 chr11 38915312 38915457 -82928399 + B1_Mus2 SINE Alu 1 146 -1 5 881 33 64 0 13 chr11 38916047 38916086 -82927770 + AT_rich Low_complexity Low_complexity 1 39 0 6 881 551 286 77 0 chr11 38916086 38916282 -82927574 + B3 SINE B2 3 213 -3 6 881 33 64 0 13 chr11 38916282 38916321 -82927535 + AT_rich Low_complexity Low_complexity 1 39 0 6 881 22 26 0 25 chr11 38917279 38917305 -82926551 + AT_rich Low_complexity Low_complexity 1 26 0 6 881 5010 51 0 5 chr11 38917305 38917940 -82925916 + L1Md_F2 LINE L1 5949 6580 -2 6 881 22 26 0 25 chr11 38917940 38917953 -82925903 + AT_rich Low_complexity Low_complexity 1 13 0 6 881 2309 123 62 0 chr11 38917953 38918327 -82925529 + L1_Mus3 LINE L1 6235 6631 -7 6 881 315 360 62 33 chr11 38919362 38919606 -82924250 - Charlie7 DNA MER1_type -2228 384 134 6 881 548 70 12 0 chr11 38919735 38919821 -82924035 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 6 881 21 36 0 0 chr11 38919842 38919870 -82923986 + AT_rich Low_complexity Low_complexity 1 28 0 6 881 297 0 0 0 chr11 38920470 38920503 -82923353 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 881 25 31 0 0 chr11 38920936 38920968 -82922888 + AT_rich Low_complexity Low_complexity 1 32 0 6 881 1733 154 87 22 chr11 38921117 38921475 -82922381 - Lx2B LINE L1 -1 6996 6616 6 881 248 131 0 21 chr11 38925864 38925911 -82917945 + GA-rich Low_complexity Low_complexity 2 47 0 6 881 228 175 0 0 chr11 38926057 38926120 -82917736 + T-rich Low_complexity Low_complexity 1 63 0 6 881 1122 88 0 0 chr11 38926120 38926268 -82917588 - B1_Mus1 SINE Alu 0 148 1 6 881 1792 156 80 0 chr11 38926317 38926643 -82917213 - Lx2B LINE L1 -989 6011 5660 6 881 1564 229 48 50 chr11 38926636 38927092 -82916764 + Lx2B LINE L1 6545 6999 -1 6 881 312 333 16 32 chr11 38928007 38928131 -82915725 - B4A SINE B4 -41 251 130 6 881 359 323 111 34 chr11 38928156 38928364 -82915492 - Tigger5 DNA MER2_type -2166 240 17 6 110 3531 185 34 59 chr11 38928366 38929312 -82914544 + Lx7 LINE L1 2309 3230 -2650 6 882 1210 208 17 14 chr11 38929299 38929596 -82914260 + Lx7 LINE L1 4980 5277 -603 6 882 3860 189 38 55 chr11 38929627 38930512 -82913344 + RMER12B LTR ERVK 345 1214 -190 6 882 5017 255 70 73 chr11 38930576 38931524 -82912332 + Lx7 LINE L1 5241 6228 -1468 6 882 232 324 65 28 chr11 38931524 38931632 -82912224 - RMER12 LTR ERVK -487 835 724 6 882 5017 255 70 73 chr11 38931632 38932342 -82911514 + Lx7 LINE L1 6229 6970 -726 6 882 1382 67 0 25 chr11 38932342 38932541 -82911315 - L1_Mus1 LINE L1 0 6567 6374 6 882 5017 262 65 97 chr11 38932541 38932990 -82910866 + Lx7 LINE L1 6971 7416 -280 6 882 537 16 0 0 chr11 38932990 38933052 -82910804 + (TTTTA)n Simple_repeat Simple_repeat 4 65 0 6 882 5017 262 65 97 chr11 38933052 38933247 -82910609 + Lx7 LINE L1 7417 7622 -74 6 882 474 18 0 0 chr11 38933274 38933329 -82910527 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 882 276 30 0 0 chr11 38933329 38933361 -82910495 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 882 575 359 23 28 chr11 38936155 38936373 -82907483 - ID_B1 SINE B4 -2 222 6 6 882 241 319 106 0 chr11 38936624 38936737 -82907119 + MLT2B2 LTR ERVL 413 537 -25 6 882 324 328 0 2 chr11 38936823 38936927 -82906929 + B1_Mur2 SINE Alu 1 103 -46 6 882 189 0 0 0 chr11 38939013 38939034 -82904822 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 6 882 2033 139 3 12 chr11 38940492 38940833 -82903023 + Lx2 LINE L1 6086 6423 -574 6 882 456 19 0 0 chr11 38940989 38941042 -82902814 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 882 355 311 39 72 chr11 38941750 38941958 -82901898 + RMER15 LTR ERVL 342 542 -33 6 882 2042 154 8 17 chr11 38941999 38942350 -82901506 + Lx LINE L1 6299 6646 -8 6 882 1065 77 0 0 chr11 38942410 38942553 -82901303 + B1_Mus2 SINE Alu 2 144 -3 6 882 2270 63 17 149 chr11 38942563 38943022 -82900834 - RLTR10 LTR ERVK -16 374 1 6 882 279 0 0 0 chr11 38943029 38943060 -82900796 + (A)n Simple_repeat Simple_repeat 1 31 0 6 882 214 250 297 0 chr11 38943085 38943149 -82900707 + PB1D10 SINE Alu 27 109 -8 6 882 245 345 0 60 chr11 38944486 38944603 -82899253 - B3 SINE B2 -106 110 1 6 882 438 272 0 58 chr11 38945664 38945785 -82898071 - Lx9 LINE L1 -881 6763 6650 6 882 1346 74 0 0 chr11 38946002 38946177 -82897679 - MTA_Mm LTR MaLR 0 396 222 6 882 2293 192 60 139 chr11 38946177 38947053 -82896803 - RMER17D2 LTR ERVK -2 807 1 6 882 1311 125 46 67 chr11 38947053 38947095 -82896761 - MTA_Mm LTR MaLR -166 230 190 6 882 375 23 0 0 chr11 38947095 38947139 -82896717 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 6 882 1311 125 46 67 chr11 38947139 38947154 -82896702 - MTA_Mm LTR MaLR -207 189 188 6 882 3623 43 0 7 chr11 38947154 38947602 -82896254 - L1Md_T LINE L1 0 6582 6138 6 882 1311 125 46 67 chr11 38947602 38947778 -82896078 - MTA_Mm LTR MaLR -209 187 1 6 882 393 22 0 0 chr11 38948365 38948411 -82895445 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 882 496 293 22 31 chr11 38948416 38948638 -82895218 - L1MA4 LINE L1 -392 5908 5689 6 882 341 117 17 0 chr11 38948850 38948910 -82894946 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 882 257 0 0 0 chr11 38948950 38948979 -82894877 - L1_Mm LINE L1 -1054 4829 4801 6 882 5760 8 0 0 chr11 38948979 38949622 -82894234 + L1Md_T LINE L1 5940 6582 0 6 882 243 0 0 0 chr11 38949655 38949682 -82894174 + (A)n Simple_repeat Simple_repeat 1 27 0 6 882 1096 222 0 0 chr11 38950663 38950875 -82892981 + MTC LTR MaLR 206 417 -4 6 882 6497 85 70 5 chr11 38950875 38951956 -82891900 + L1_Mus1 LINE L1 5427 6566 -1 6 882 647 204 20 0 chr11 38951984 38952136 -82891720 + GA-rich Low_complexity Low_complexity 4 158 0 6 882 1242 100 0 0 chr11 38952137 38952317 -82891539 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 6 882 2284 260 118 41 chr11 38952318 38953156 -82890700 + MT-int LTR MaLR 3 905 -193 6 882 761 240 97 42 chr11 38953156 38953373 -82890483 + Lx5 LINE L1 6575 6803 -247 6 882 1449 227 60 6 chr11 38953373 38953688 -82890168 + MTC LTR MaLR 90 421 0 6 882 22 35 0 0 chr11 38953691 38953720 -82890136 + AT_rich Low_complexity Low_complexity 1 29 0 6 882 1788 210 183 25 chr11 38954800 38955396 -82888460 + RMER6C LTR ERVK 1 690 0 6 882 1870 39 43 0 chr11 38955411 38955644 -82888212 - L1Md_F3 LINE L1 -17 6567 6325 6 882 3928 54 2 18 chr11 38955840 38956346 -82887510 - L1Md_F2 LINE L1 -1 6581 6084 6 882 516 151 21 21 chr11 38956348 38956443 -82887413 + L1Md_A LINE L1 451 545 -6179 6 882 4305 115 27 5 chr11 38956863 38957535 -82886321 + Lx3A LINE L1 6288 6974 -7 6 882 24 0 0 0 chr11 38957535 38957559 -82886297 + AT_rich Low_complexity Low_complexity 1 24 0 6 882 1789 198 106 90 chr11 38958083 38958761 -82885095 + RMER6C LTR ERVK 2 690 0 6 882 359 200 98 23 chr11 38958845 38958978 -82884878 - Lx9 LINE L1 -8 7636 7494 6 882 449 259 59 0 chr11 38958984 38959119 -82884737 + Lx9 LINE L1 7282 7424 -220 6 882 464 344 108 45 chr11 38959450 38959504 -82884352 + L1M2 LINE L1 4744 4802 -1341 6 882 378 0 0 0 chr11 38959504 38959546 -82884310 + (CTATA)n Simple_repeat Simple_repeat 5 46 0 6 882 464 344 108 45 chr11 38959546 38960018 -82883838 + L1M2 LINE L1 4803 5302 -841 6 882 16068 136 25 38 chr11 38960024 38963983 -82879873 + Lx2B LINE L1 567 4404 -1479 6 882 1383 60 16 21 chr11 38963983 38964170 -82879686 + B2_Mm1a SINE B2 1 186 -7 6 882 11099 223 59 78 chr11 38964170 38965438 -82878418 + Lx2B LINE L1 4405 5705 -178 6 882 3592 60 0 2 chr11 38965438 38965888 -82877968 + L1_Mus1 LINE L1 6117 6565 -2 6 882 6544 124 44 15 chr11 38965899 38967095 -82876761 + MusHAL1 LINE L1 837 2067 -645 6 882 459 0 0 0 chr11 38967477 38967528 -82876328 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 6 882 229 150 67 0 chr11 38967711 38967771 -82876085 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 882 2111 188 68 36 chr11 38967881 38968382 -82875474 + Lx2B LINE L1 5941 6457 -543 6 882 5369 127 30 15 chr11 38968382 38969256 -82874600 + Lx3B LINE L1 5674 6560 -413 6 882 357 24 0 0 chr11 38969540 38969582 -82874274 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 882 321 294 0 30 chr11 38969583 38969708 -82874148 + L1MA4A LINE L1 5809 5922 -381 6 882 2919 232 4 42 chr11 38970580 38971265 -82872591 + Lx2B LINE L1 6329 6987 -13 6 882 180 111 0 0 chr11 38971265 38971292 -82872564 + (TAA)n Simple_repeat Simple_repeat 1 27 0 6 882 4809 91 6 4 chr11 38971761 38972437 -82871419 + L1_Mus3 LINE L1 5947 6623 -15 6 882 29 0 0 0 chr11 38972566 38972595 -82871261 + AT_rich Low_complexity Low_complexity 1 29 0 6 882 1299 112 0 26 chr11 38972765 38972958 -82870898 - B2_Mm2 SINE B2 -6 189 2 6 882 364 339 52 12 chr11 38973633 38973806 -82870050 + MER58A DNA MER1_type 13 192 -32 6 882 537 356 44 16 chr11 38974378 38974626 -82869230 + RMER15 LTR ERVL 281 535 -40 6 882 676 157 0 0 chr11 38975698 38975806 -82868050 - B1_Mus1 SINE Alu -1 147 40 6 882 2066 163 3 3 chr11 38976729 38977079 -82866777 + Lx2A1 LINE L1 6654 7003 -5 6 882 252 0 0 0 chr11 38977086 38977114 -82866742 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 6 882 2208 101 3 66 chr11 38977677 38978026 -82865830 + ORR1A2 LTR MaLR 1 327 0 6 882 386 239 83 33 chr11 38978281 38978402 -82865454 + B1_Mus1 SINE Alu 22 148 0 6 882 324 382 0 26 chr11 38978808 38978921 -82864935 + PB1D10 SINE Alu 1 110 -7 6 882 242 282 99 69 chr11 38979622 38979824 -82864032 - L1MC3 LINE L1 -1122 6663 6456 6 882 232 172 0 49 chr11 38979939 38980000 -82863856 + T-rich Low_complexity Low_complexity 3 60 0 6 882 245 277 89 65 chr11 38980140 38980433 -82863423 - L1MC LINE L1 -2727 3419 3120 6 882 400 238 116 105 chr11 38980587 38980864 -82862992 - L1MC LINE L1 -3154 2992 2713 6 882 3290 179 40 0 chr11 38980963 38981585 -82862271 + Lx2 LINE L1 6349 6995 -2 6 882 1447 164 18 14 chr11 38981598 38981876 -82861980 + Lx2B LINE L1 6721 6999 -1 6 882 216 97 0 0 chr11 38982065 38982096 -82861760 + (CTTTG)n Simple_repeat Simple_repeat 2 32 0 6 882 23 0 0 0 chr11 38982462 38982485 -82861371 + AT_rich Low_complexity Low_complexity 1 23 0 6 882 261 0 0 0 chr11 38982897 38982926 -82860930 + (A)n Simple_repeat Simple_repeat 1 29 0 6 882 390 42 0 0 chr11 38982988 38983036 -82860820 + (GGA)n Simple_repeat Simple_repeat 2 49 0 6 882 270 0 0 0 chr11 38983036 38983066 -82860790 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 882 267 284 38 19 chr11 38984636 38984794 -82859062 - L1MCa LINE L1 -5449 1059 899 7 882 1112 325 134 21 chr11 38985039 38985908 -82857948 + Lx8 LINE L1 6224 7191 -282 7 882 1328 262 44 54 chr11 38986201 38986608 -82857248 - Lx5 LINE L1 -5 7045 6643 7 882 364 339 114 76 chr11 38986799 38987061 -82856795 - B4 SINE B4 -18 274 3 7 882 14574 141 139 6 chr11 38987626 38992935 -82850921 + Lx3_Mus LINE L1 209 7001 -8 7 882 35 41 0 0 chr11 38992935 38992984 -82850872 + AT_rich Low_complexity Low_complexity 1 49 0 7 882 596 319 88 19 chr11 38993500 38993820 -82850036 - L2 LINE L2 -1645 1774 1433 7 882 303 238 2 39 chr11 38995497 38995606 -82848250 + L1MA4 LINE L1 5794 5924 -376 7 882 418 329 42 0 chr11 38996508 38996675 -82847181 - Tigger7 DNA MER2_type -4 2487 2314 7 882 531 45 0 0 chr11 38997986 38998052 -82845804 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 882 28 29 0 0 chr11 38998699 38998734 -82845122 + AT_rich Low_complexity Low_complexity 1 35 0 7 882 444 128 0 0 chr11 38998762 38998840 -82845016 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 882 198 0 0 0 chr11 38998840 38998862 -82844994 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 882 233 309 56 19 chr11 38998864 38998979 -82844877 - MIR SINE MIR -44 224 97 7 882 534 174 10 0 chr11 38999902 39000000 -82843856 + RLTR25A LTR ERVK 1 99 -1004 7 882 4433 166 118 13 chr11 39000001 39000909 -82842947 + RLTR25A LTR ERVK 101 1103 0 1 882 4035 173 6 3 chr11 39001089 39001803 -82842053 + Lx2 LINE L1 6282 6997 0 2 882 1338 58 0 0 chr11 39001812 39001984 -82841872 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 3 882 246 156 0 0 chr11 39002716 39002761 -82841095 + CT-rich Low_complexity Low_complexity 2 46 0 4 882 940 88 36 0 chr11 39002762 39002899 -82840957 - B1_Mus2 SINE Alu 0 147 6 5 882 446 175 101 70 chr11 39002806 39002935 -82840921 - MT2B LTR ERVL -344 257 125 6 882 228 286 51 25 chr11 39002935 39002959 -82840897 - ORR1B1-int LTR MaLR -755 749 593 7 882 2114 261 40 94 chr11 39002970 39003877 -82839979 + Lx7 LINE L1 6839 7696 0 8 882 4093 103 12 109 chr11 39003963 39004778 -82839078 - RMER17A LTR ERVK -15 736 1 9 882 226 360 90 0 chr11 39005231 39005342 -82838514 + MTE2b LTR MaLR 1 121 -258 1 882 5474 55 55 0 chr11 39005343 39006051 -82837805 - L1Md_F2 LINE L1 0 6582 5836 1 882 586 204 7 35 chr11 39006051 39006193 -82837663 + L1VL1 LINE L1 135 272 -6150 1 882 571 347 27 36 chr11 39006194 39006415 -82837441 + MTE2b LTR MaLR 107 325 -54 1 882 914 242 34 23 chr11 39006911 39007173 -82836683 - Lx6 LINE L1 0 7460 7196 1 882 25 31 0 0 chr11 39007994 39008026 -82835830 + AT_rich Low_complexity Low_complexity 1 32 0 1 882 1508 243 23 29 chr11 39008510 39008853 -82835003 - Lx5 LINE L1 -5 7045 6705 1 882 24 0 0 0 chr11 39009722 39009746 -82834110 + AT_rich Low_complexity Low_complexity 1 24 0 1 882 243 0 0 0 chr11 39010349 39010376 -82833480 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 882 201 229 0 0 chr11 39010378 39010426 -82833430 + CT-rich Low_complexity Low_complexity 2 49 0 1 882 372 22 0 0 chr11 39010481 39010526 -82833330 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 882 30552 83 2 36 chr11 39010554 39015081 -82828775 + L1Md_F2 LINE L1 566 4989 -894 2 882 8574 22 3 0 chr11 39015081 39016074 -82827782 + L1Md_A LINE L1 5587 6582 0 2 882 30552 84 2 42 chr11 39016074 39016453 -82827403 + L1Md_F2 LINE L1 4990 5294 -589 2 882 2063 40 0 0 chr11 39016453 39016702 -82827154 + L1Md_T LINE L1 6333 6581 -1 2 882 30552 84 2 42 chr11 39016702 39016995 -82826861 + L1Md_F2 LINE L1 5295 5585 -298 2 882 7200 96 1 6 chr11 39016996 39017997 -82825859 + L1Md_F2 LINE L1 5587 6582 0 2 882 427 339 22 16 chr11 39018667 39018850 -82825006 - ORR1E LTR MaLR -170 189 6 2 882 311 167 0 0 chr11 39019147 39019201 -82824655 + PB1D9 SINE Alu 1 54 -66 2 882 334 0 0 161 chr11 39019221 39019395 -82824461 + (CAGAG)n Simple_repeat Simple_repeat 5 150 0 2 882 436 196 8 130 chr11 39019398 39019521 -82824335 + B1_Mur3 SINE Alu 42 149 0 2 882 360 294 109 19 chr11 39019543 39019699 -82824157 + MLT1A0 LTR MaLR 174 343 -22 2 882 326 325 79 14 chr11 39019733 39019948 -82823908 + L2 LINE L2 2317 2545 -874 2 882 314 161 104 26 chr11 39020147 39020262 -82823594 + Lx9 LINE L1 7520 7643 -1 2 882 700 332 71 0 chr11 39020614 39020840 -82823016 - MTE2b LTR MaLR -120 259 18 3 882 229 306 61 95 chr11 39021046 39021194 -82822662 - Looper DNA PiggyBac -1046 512 370 3 882 393 230 112 73 chr11 39021911 39022117 -82821739 + Lx9 LINE L1 7427 7640 -4 3 882 484 255 20 0 chr11 39022811 39022913 -82820943 - B1_Mur2 SINE Alu -24 125 22 3 882 3709 199 91 19 chr11 39023050 39024335 -82819521 + L1_Mur1 LINE L1 210 2020 -3863 3 882 288 0 0 0 chr11 39024335 39024367 -82819489 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 882 3709 215 138 41 chr11 39024367 39024901 -82818955 + L1_Mur1 LINE L1 2021 2545 -3338 3 882 2518 116 5 16 chr11 39024894 39025270 -82818586 + Lx LINE L1 6277 6648 -6 3 882 3630 147 36 53 chr11 39025269 39026045 -82817811 + Lx3C LINE L1 2536 3298 -2588 3 882 2726 80 8 8 chr11 39026039 39026416 -82817440 + L1_Mus3 LINE L1 6262 6638 0 3 882 1469 162 14 3 chr11 39026411 39026587 -82817269 + Lx3C LINE L1 3306 3483 -2403 3 882 428 26 51 26 chr11 39026587 39026665 -82817191 + (CAAA)n Simple_repeat Simple_repeat 1 80 0 3 882 1469 162 14 3 chr11 39026665 39026773 -82817083 + Lx3C LINE L1 3484 3592 -2294 3 882 3628 151 56 38 chr11 39026773 39027781 -82816075 + RLTR13D1 LTR ERVK 1 1023 0 4 882 6942 168 31 23 chr11 39027809 39029715 -82814141 + Lx3C LINE L1 5055 6974 -2 3 882 801 122 145 9 chr11 39029817 39029968 -82813888 + L1_Mus2 LINE L1 6417 6570 -14 4 882 22 35 0 0 chr11 39030364 39030393 -82813463 + AT_rich Low_complexity Low_complexity 1 29 0 4 882 589 250 14 48 chr11 39030440 39030587 -82813269 + B1_Mur3 SINE Alu 8 149 0 4 882 21 0 0 0 chr11 39030621 39030642 -82813214 + AT_rich Low_complexity Low_complexity 1 21 0 4 882 505 314 12 74 chr11 39031186 39031444 -82812412 + Lx9 LINE L1 6920 7161 -483 4 882 2686 260 53 50 chr11 39031434 39032357 -82811499 + Lx6 LINE L1 5477 6411 -1049 4 882 285 89 0 0 chr11 39032426 39032471 -82811385 + (T)n Simple_repeat Simple_repeat 1 45 0 4 882 183 162 0 0 chr11 39032485 39032522 -82811334 + A-rich Low_complexity Low_complexity 1 37 0 4 882 388 215 52 37 chr11 39032706 39032841 -82811015 + L1MA4 LINE L1 5781 5917 -383 4 882 22 35 0 0 chr11 39033192 39033221 -82810635 + AT_rich Low_complexity Low_complexity 1 29 0 5 882 264 219 10 50 chr11 39033280 39033381 -82810475 + Lx6 LINE L1 7339 7435 -25 4 882 615 51 0 0 chr11 39033461 39033540 -82810316 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 882 248 291 0 25 chr11 39033755 39033836 -82810020 + CT-rich Low_complexity Low_complexity 1 79 0 5 882 194 187 39 26 chr11 39033853 39033930 -82809926 + CT-rich Low_complexity Low_complexity 2 79 0 5 882 895 69 23 0 chr11 39034758 39034889 -82808967 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 5 882 792 132 0 0 chr11 39035252 39035337 -82808519 + (T)n Simple_repeat Simple_repeat 1 85 0 5 882 1055 109 0 7 chr11 39035337 39035485 -82808371 - B1_Mm SINE Alu 0 147 1 5 882 792 132 0 0 chr11 39035485 39035535 -82808321 + (T)n Simple_repeat Simple_repeat 1 50 0 5 882 4702 44 0 0 chr11 39035612 39036179 -82807677 - L1Md_T LINE L1 0 6582 6016 5 882 393 70 0 0 chr11 39039227 39039284 -82804572 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 882 512 151 0 28 chr11 39039909 39040018 -82803838 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 5 882 226 336 20 40 chr11 39040464 39040616 -82803240 - B1_Mur2 SINE Alu 0 149 1 6 882 22 88 0 0 chr11 39040848 39040905 -82802951 + AT_rich Low_complexity Low_complexity 1 57 0 6 882 276 30 0 0 chr11 39041840 39041873 -82801983 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 6 882 22 0 0 0 chr11 39042870 39042892 -82800964 + AT_rich Low_complexity Low_complexity 1 22 0 6 882 209 212 45 0 chr11 39042920 39042986 -82800870 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 6 882 22 35 0 0 chr11 39043492 39043521 -82800335 + AT_rich Low_complexity Low_complexity 1 29 0 6 882 328 346 51 37 chr11 39043679 39043895 -82799961 - Lx8 LINE L1 -206 7267 7049 6 882 399 180 0 0 chr11 39046646 39046757 -82797099 + GA-rich Low_complexity Low_complexity 2 112 0 6 882 1231 187 175 15 chr11 39047102 39047433 -82796423 + ORR1C2 LTR MaLR 1 384 0 6 882 2456 211 28 14 chr11 39048564 39049141 -82794715 + Lx9 LINE L1 6962 7546 -98 6 882 25 51 0 0 chr11 39049218 39049257 -82794599 + AT_rich Low_complexity Low_complexity 1 39 0 7 882 475 284 158 20 chr11 39049389 39049737 -82794119 + L1MC3 LINE L1 5821 6216 -1569 7 882 22 35 0 0 chr11 39049762 39049791 -82794065 + AT_rich Low_complexity Low_complexity 1 29 0 7 882 1093 82 0 7 chr11 39049944 39050092 -82793764 - B1_Mus2 SINE Alu 0 147 1 7 882 897 256 134 18 chr11 39050193 39050468 -82793388 + Lx2B LINE L1 6694 7000 0 7 882 200 189 0 36 chr11 39050496 39050551 -82793305 + GA-rich Low_complexity Low_complexity 4 56 0 7 882 436 310 177 25 chr11 39050722 39051322 -82792534 + L1MC3 LINE L1 7071 7760 -25 7 882 271 319 86 50 chr11 39051845 39051995 -82791861 + MamRep605 Unknown Unknown 457 619 -257 7 882 2411 88 6 9 chr11 39051995 39052338 -82791518 - L1Md_F2 LINE L1 -11 6571 6230 7 882 271 319 86 50 chr11 39052338 39052408 -82791448 + MamRep605 Unknown Unknown 620 685 -191 7 882 690 272 43 28 chr11 39053556 39053809 -82790047 - Tigger7 DNA MER2_type -105 2386 2130 7 882 353 124 31 10 chr11 39054183 39054281 -82789575 + T-rich Low_complexity Low_complexity 1 100 0 7 882 1169 62 7 0 chr11 39054281 39054427 -82789429 - B1_Mm SINE Alu 0 147 1 8 882 224 59 29 0 chr11 39054555 39054589 -82789267 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 882 483 63 0 0 chr11 39054787 39054850 -82789006 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 882 435 307 50 0 chr11 39055235 39055375 -82788481 - B1F2 SINE Alu -2 147 1 8 882 533 263 28 22 chr11 39055375 39055393 -82788463 - ID_B1 SINE B4 -68 223 70 8 882 605 272 74 39 chr11 39056736 39056912 -82786944 + B3 SINE B2 1 184 -32 8 882 207 69 0 0 chr11 39056912 39056941 -82786915 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 882 605 272 74 39 chr11 39056941 39056967 -82786889 + B3 SINE B2 185 210 -6 8 882 2088 245 38 83 chr11 39057082 39057729 -82786127 + L1VL2 LINE L1 122 732 -5603 8 882 2417 98 8 14 chr11 39057729 39058092 -82785764 + L1_Mus3 LINE L1 6278 6638 0 8 882 2186 123 38 30 chr11 39058092 39058585 -82785271 + L1VL2 LINE L1 733 1230 -2385 8 882 8371 188 37 6 chr11 39058578 39058904 -82784952 + L1_Mur2 LINE L1 3524 3849 -2028 8 882 492 18 0 0 chr11 39058904 39058961 -82784895 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 110 8371 188 37 6 chr11 39058961 39060299 -82783557 + L1_Mur2 LINE L1 3850 5234 -643 8 883 293 0 27 0 chr11 39060299 39060336 -82783520 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 9 883 8371 188 37 6 chr11 39060336 39060392 -82783464 + L1_Mur2 LINE L1 5235 5297 -580 8 883 13627 57 0 5 chr11 39060602 39062343 -82781513 + L1Md_F2 LINE L1 3855 5586 -297 9 883 7986 49 2 3 chr11 39062344 39063339 -82780517 + L1Md_F2 LINE L1 5588 6581 -1 9 883 6449 136 31 13 chr11 39063763 39065098 -82778758 + Lx LINE L1 5288 6649 -5 9 883 1558 62 5 0 chr11 39065221 39065429 -82778427 - L1Md_F2 LINE L1 0 6582 6374 9 883 1192 229 108 37 chr11 39065446 39065799 -82778057 + ORR1C2 LTR MaLR 5 382 -2 9 883 2145 258 70 12 chr11 39065801 39066541 -82777315 + ORR1C2-int LTR MaLR 4 917 -592 9 883 4832 124 16 3 chr11 39066541 39067298 -82776558 + L1_Mm LINE L1 4773 5539 -344 9 883 1474 249 123 9 chr11 39067298 39067836 -82776020 + ORR1C2-int LTR MaLR 911 1509 0 9 883 696 24 0 0 chr11 39067922 39068004 -82775852 + (TA)n Simple_repeat Simple_repeat 2 83 0 9 883 625 293 23 6 chr11 39069116 39069291 -82774565 - MamRep137 DNA TcMar? -191 253 76 9 883 261 186 47 0 chr11 39069299 39069423 -82774433 + (TA)n Simple_repeat Simple_repeat 1 129 0 9 883 558 227 147 31 chr11 39069435 39069626 -82774230 - B3 SINE B2 -1 215 3 1 883 201 74 0 0 chr11 39069727 39069754 -82774102 + (T)n Simple_repeat Simple_repeat 1 27 0 1 883 534 103 0 0 chr11 39070107 39070194 -82773662 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 883 387 0 0 0 chr11 39070194 39070237 -82773619 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 883 29 0 0 0 chr11 39070570 39070599 -82773257 + AT_rich Low_complexity Low_complexity 1 29 0 1 883 962 355 87 27 chr11 39070944 39071573 -82772283 + Lx8 LINE L1 6465 7131 -342 1 883 1387 207 4 31 chr11 39071697 39071956 -82771900 - Lx3C LINE L1 -169 6807 6556 1 883 728 133 0 17 chr11 39071960 39072136 -82771720 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 1 883 531 313 123 22 chr11 39072312 39072621 -82771235 - MTEb LTR MaLR -33 346 3 1 883 1284 89 0 0 chr11 39074127 39074307 -82769549 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 883 2947 167 51 8 chr11 39074768 39075298 -82768558 + Lx3A LINE L1 6427 6979 -2 1 883 333 0 0 0 chr11 39076157 39076194 -82767662 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 883 2910 43 0 0 chr11 39077193 39077539 -82766317 - ORR1A1 LTR MaLR 0 346 1 1 883 1444 164 46 0 chr11 39077761 39078024 -82765832 + Lx3A LINE L1 6707 6981 0 1 883 865 120 7 7 chr11 39078264 39078407 -82765449 + URR1B DNA MER1_type 83 225 0 1 883 3944 147 6 14 chr11 39078520 39079182 -82764674 - Lx LINE L1 0 6654 5998 1 883 1707 83 9 0 chr11 39079191 39079419 -82764437 - L1_Mus1 LINE L1 0 6567 6338 1 883 870 88 0 0 chr11 39079418 39079532 -82764324 + L1_Mus1 LINE L1 6111 6224 -343 1 883 1308 88 16 0 chr11 39079526 39079708 -82764148 - Lx LINE L1 -643 6011 5827 1 883 474 49 0 0 chr11 39079704 39079765 -82764091 + Lx LINE L1 5771 5831 -823 1 883 393 335 105 47 chr11 39084565 39084822 -82759034 - B4A SINE B4 -2 290 19 1 883 234 227 0 0 chr11 39085430 39085474 -82758382 + CT-rich Low_complexity Low_complexity 3 46 0 1 883 29 0 0 0 chr11 39085491 39085520 -82758336 + AT_rich Low_complexity Low_complexity 1 29 0 1 883 25 0 0 0 chr11 39085928 39085953 -82757903 + AT_rich Low_complexity Low_complexity 1 25 0 1 883 22 0 0 0 chr11 39086131 39086153 -82757703 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 225 0 0 0 chr11 39086205 39086230 -82757626 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 1 883 297 373 96 9 chr11 39086355 39086585 -82757271 - MLT2D LTR ERVL -61 353 104 1 883 411 73 0 0 chr11 39087143 39087198 -82756658 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 883 288 0 0 0 chr11 39087824 39087856 -82756000 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 883 303 179 0 0 chr11 39088490 39088557 -82755299 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 883 1408 274 24 26 chr11 39088821 39089279 -82754577 + Lx9 LINE L1 7002 7458 -186 1 883 258 32 0 0 chr11 39089279 39089310 -82754546 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 883 278 356 25 0 chr11 39090522 39090640 -82753216 + B4A SINE B4 126 246 -46 1 883 633 115 0 0 chr11 39090650 39090746 -82753110 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 1 883 366 42 0 0 chr11 39090802 39090850 -82753006 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 883 315 0 0 0 chr11 39091445 39091480 -82752376 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 883 387 0 0 0 chr11 39091480 39091522 -82752334 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 883 1506 78 10 0 chr11 39091754 39091959 -82751897 - IAPLTR2b LTR ERVK -120 207 1 1 883 4438 115 30 73 chr11 39091968 39092814 -82751042 - RMER17D2 LTR ERVK 0 809 1 1 883 1507 94 8 33 chr11 39093041 39093284 -82750572 - Lx3_Mus LINE L1 0 7009 6773 1 883 355 0 19 39 chr11 39093731 39093783 -82750073 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1 883 234 0 0 0 chr11 39094183 39094209 -82749647 + (T)n Simple_repeat Simple_repeat 1 26 0 1 883 641 13 13 0 chr11 39094413 39094491 -82749365 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 883 522 389 50 27 chr11 39096670 39097151 -82746705 - Lx8 LINE L1 -219 7254 6763 1 883 1066 86 7 0 chr11 39097181 39097321 -82746535 + B1_Mus2 SINE Alu 2 142 -5 1 883 1358 165 16 4 chr11 39097517 39097772 -82746084 - Lx2 LINE L1 -1 6996 6739 1 883 2949 130 27 10 chr11 39099143 39099626 -82744230 - L1_Mur2 LINE L1 -287 5590 5100 1 883 5890 174 25 6 chr11 39099646 39100683 -82743173 + Lx4A LINE L1 5868 6924 -134 1 883 976 229 116 79 chr11 39100758 39101086 -82742770 - RLTR11A LTR ERVK -188 340 1 1 883 277 184 35 132 chr11 39101106 39101250 -82742606 + Lx4A LINE L1 6925 7054 -4 1 883 192 77 0 0 chr11 39101250 39101276 -82742580 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 883 183 80 0 0 chr11 39101805 39101830 -82742026 + (T)n Simple_repeat Simple_repeat 1 25 0 1 883 2318 180 73 9 chr11 39102020 39102473 -82741383 + Lx LINE L1 6173 6654 0 1 883 534 313 72 11 chr11 39103203 39103384 -82740472 + B3A SINE B2 4 195 -3 1 883 453 103 0 0 chr11 39103447 39103515 -82740341 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 883 209 340 0 41 chr11 39103906 39104004 -82739852 + GA-rich Low_complexity Low_complexity 3 96 0 1 883 318 332 68 68 chr11 39104528 39104809 -82739047 + L1MC LINE L1 5259 5539 -2343 1 883 261 0 0 0 chr11 39105126 39105155 -82738701 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 1 883 627 340 51 16 chr11 39105341 39105595 -82738261 + B4A SINE B4 14 276 -16 1 883 558 114 0 0 chr11 39105640 39105728 -82738128 + (TC)n Simple_repeat Simple_repeat 2 89 0 1 883 774 70 0 0 chr11 39105812 39105926 -82737930 + (TCTCTG)n Simple_repeat Simple_repeat 6 119 0 1 883 585 110 0 0 chr11 39106113 39106213 -82737643 + L1_Mus2 LINE L1 6467 6566 0 1 883 388 293 75 54 chr11 39106922 39107283 -82736573 - L1MC5 LINE L1 -932 7029 6714 1 883 2197 241 56 32 chr11 39107369 39108130 -82735726 + Lx4B LINE L1 6209 6992 -8 1 883 194 91 30 0 chr11 39108131 39108164 -82735692 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 883 819 103 14 14 chr11 39108522 39108669 -82735187 - L1_Mus3 LINE L1 -7 6631 6485 1 883 180 0 0 0 chr11 39109041 39109061 -82734795 + (A)n Simple_repeat Simple_repeat 1 20 0 1 883 554 289 0 0 chr11 39109119 39109247 -82734609 + B1_Mur2 SINE Alu 10 137 -12 1 883 1115 82 0 0 chr11 39109480 39109626 -82734230 - B1_Mus2 SINE Alu 0 147 2 1 883 24 0 0 0 chr11 39109675 39109699 -82734157 + AT_rich Low_complexity Low_complexity 1 24 0 1 883 254 320 9 97 chr11 39112918 39113032 -82730824 + RSINE1 SINE B4 60 163 -2 1 883 494 75 12 0 chr11 39113043 39113123 -82730733 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 1 883 186 103 0 0 chr11 39113129 39113158 -82730698 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 883 226 67 22 22 chr11 39113630 39113676 -82730180 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 883 486 355 46 39 chr11 39113983 39114264 -82729592 + Tigger7 DNA MER2_type 65 347 -2144 1 883 39 22 0 0 chr11 39114903 39114949 -82728907 + AT_rich Low_complexity Low_complexity 1 46 0 1 883 279 133 0 0 chr11 39115023 39115068 -82728788 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 883 2128 64 13 39 chr11 39115160 39115467 -82728389 - L1_Mus1 LINE L1 -6 6561 6263 1 883 526 189 98 45 chr11 39117365 39117498 -82726358 + B1_Mur4 SINE Alu 3 142 -8 1 883 192 185 0 0 chr11 39117514 39117568 -82726288 + (TAA)n Simple_repeat Simple_repeat 3 56 0 1 883 3293 148 38 15 chr11 39117853 39118436 -82725420 - Lx LINE L1 -2 6652 6057 1 883 194 30 91 0 chr11 39118528 39118561 -82725295 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 883 321 338 70 131 chr11 39118564 39118837 -82725019 - MLT1A LTR MaLR -23 351 80 1 883 2675 34 22 0 chr11 39118837 39119157 -82724699 + IAPLTR2b LTR ERVK 1 327 0 1 883 321 338 70 131 chr11 39119157 39119257 -82724599 - MLT1A LTR MaLR -295 79 1 1 883 2694 68 0 0 chr11 39119472 39119826 -82724030 - L1Md_F2 LINE L1 -12 6570 6217 1 883 2648 62 0 0 chr11 39119826 39120163 -82723693 + L1Md_F2 LINE L1 5898 6234 -348 1 883 408 20 0 0 chr11 39120325 39120374 -82723482 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 883 22 0 0 0 chr11 39122412 39122434 -82721422 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 321 345 77 44 chr11 39124547 39124887 -82718969 - L1M5 LINE L1 -1333 4813 4463 1 883 414 0 0 0 chr11 39125134 39125180 -82718676 + (TTAGGG)n Simple_repeat Simple_repeat 2 47 0 1 883 1262 297 84 14 chr11 39125297 39125795 -82718061 + Lx9 LINE L1 6318 6850 -794 1 883 643 279 55 50 chr11 39125819 39126038 -82717818 + Lx9 LINE L1 7058 7277 -367 1 883 723 240 165 20 chr11 39126041 39126409 -82717447 - L1_Rod LINE L1 -441 5439 4975 1 883 539 235 47 7 chr11 39126443 39126593 -82717263 + URR1A DNA MER1_type 70 225 -1 1 883 265 298 45 22 chr11 39126595 39126729 -82717127 - L1_Rod LINE L1 -868 4979 4843 1 883 882 126 21 0 chr11 39126758 39126901 -82716955 + B1_Mus1 SINE Alu 3 148 0 1 883 340 0 48 32 chr11 39126902 39126964 -82716892 + (CAAAAA)n Simple_repeat Simple_repeat 3 65 0 1 883 31 0 0 0 chr11 39126979 39127010 -82716846 + AT_rich Low_complexity Low_complexity 1 31 0 1 883 837 267 66 6 chr11 39127020 39127337 -82716519 - L1_Rod LINE L1 -1012 4835 4500 1 883 780 288 67 53 chr11 39127333 39127769 -82716087 + Lx9 LINE L1 7125 7566 -78 1 883 926 108 50 0 chr11 39128479 39128618 -82715238 + B1_Mus1 SINE Alu 1 146 -2 1 883 644 224 0 11 chr11 39129082 39129263 -82714593 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 883 217 216 0 38 chr11 39129263 39129316 -82714540 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 1 883 225 0 0 0 chr11 39129786 39129811 -82714045 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 883 8505 7 0 0 chr11 39130076 39131028 -82712828 - L1Md_T LINE L1 0 6582 5631 1 883 26 0 0 0 chr11 39131112 39131138 -82712718 + AT_rich Low_complexity Low_complexity 1 26 0 1 883 345 252 35 88 chr11 39133043 39133093 -82710763 - Lx7 LINE L1 -418 7278 7227 1 883 2166 147 30 3 chr11 39133093 39133455 -82710401 + Lx LINE L1 6281 6652 -2 1 883 345 252 35 88 chr11 39133455 39133517 -82710339 - Lx7 LINE L1 -470 7226 7172 1 883 239 154 0 0 chr11 39133576 39133628 -82710228 - Lx LINE L1 -1 6653 6602 2 883 7984 46 0 3 chr11 39133633 39135074 -82708782 + L1Md_F3 LINE L1 5120 6555 -29 2 883 1849 232 8 3 chr11 39135074 39135458 -82708398 - Lx7 LINE L1 -517 7179 6794 1 883 433 264 12 72 chr11 39135461 39135628 -82708228 + Lx7 LINE L1 7540 7696 0 2 883 342 45 0 0 chr11 39136195 39136239 -82707617 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 883 288 0 0 0 chr11 39136239 39136270 -82707586 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 883 1420 202 7 0 chr11 39136290 39136567 -82707289 - L1_Mur2 LINE L1 -229 5648 5370 2 883 643 122 0 0 chr11 39138240 39138330 -82705526 - L1_Mus1 LINE L1 -364 6203 6114 2 883 2684 98 0 0 chr11 39138331 39138707 -82705149 + L1_Mus1 LINE L1 6192 6567 0 2 883 225 178 0 0 chr11 39141052 39141097 -82702759 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 883 955 73 0 14 chr11 39142083 39142222 -82701634 - L1Md_F2 LINE L1 -12 6570 6434 2 883 1467 6 0 0 chr11 39142222 39142394 -82701462 + L1Md_A LINE L1 6410 6581 -1 2 883 362 65 0 0 chr11 39142468 39142514 -82701342 - L1Md_F2 LINE L1 -143 6439 6394 2 883 333 0 0 0 chr11 39143943 39143980 -82699876 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 883 513 32 0 0 chr11 39144179 39144242 -82699614 + (TCC)n Simple_repeat Simple_repeat 1 63 0 2 883 220 287 21 11 chr11 39144248 39144343 -82699513 + CT-rich Low_complexity Low_complexity 3 98 0 2 883 868 84 0 84 chr11 39144743 39144886 -82698970 + B1_Mus1 SINE Alu 5 135 -13 2 883 354 61 0 0 chr11 39144886 39144935 -82698921 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 2 883 934 172 6 0 chr11 39144935 39145092 -82698764 + RMER19C LTR ERVK 454 611 0 2 883 444 18 0 0 chr11 39145135 39145191 -82698665 + L1_Mus2 LINE L1 6511 6566 0 2 883 311 316 30 8 chr11 39145207 39145341 -82698515 + L1MD LINE L1 3554 3690 -2456 2 883 433 281 139 55 chr11 39145481 39145940 -82697916 + L1M4 LINE L1 3741 4238 -1908 2 883 236 231 26 0 chr11 39145946 39146024 -82697832 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 883 299 283 11 0 chr11 39146248 39146340 -82697516 + L1M4 LINE L1 4274 4366 -1774 2 883 4266 216 39 60 chr11 39146352 39147647 -82696209 + L1_Mur3 LINE L1 3925 5192 -688 2 883 805 223 17 0 chr11 39147655 39147830 -82696026 + Lx5 LINE L1 6146 6323 -727 2 883 504 304 0 18 chr11 39147976 39148147 -82695709 + GA-rich Low_complexity Low_complexity 3 170 0 2 883 27 0 0 0 chr11 39148642 39148669 -82695187 + AT_rich Low_complexity Low_complexity 1 27 0 2 883 25 0 0 0 chr11 39148824 39148849 -82695007 + AT_rich Low_complexity Low_complexity 1 25 0 2 883 1015 95 7 7 chr11 39148862 39149010 -82694846 + B1_Mus1 SINE Alu 1 148 0 2 883 34 24 0 0 chr11 39149227 39149268 -82694588 + AT_rich Low_complexity Low_complexity 1 41 0 2 883 24 53 0 0 chr11 39149395 39149433 -82694423 + AT_rich Low_complexity Low_complexity 1 38 0 2 883 439 318 40 11 chr11 39150141 39150316 -82693540 - B3A SINE B2 -18 180 1 2 883 1699 243 22 12 chr11 39150435 39150847 -82693009 - Lx6 LINE L1 -5 7455 7040 2 883 497 151 0 0 chr11 39151530 39151623 -82692233 - Lx LINE L1 -8 6646 6554 2 883 210 91 0 0 chr11 39151762 39151795 -82692061 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 883 1191 122 4 12 chr11 39151934 39152128 -82691728 + L1_Mus2 LINE L1 5769 5987 -310 2 883 378 0 0 0 chr11 39152134 39152176 -82691680 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 883 283 385 56 33 chr11 39152497 39152712 -82691144 + MTD LTR MaLR 88 307 -112 2 883 3757 108 5 37 chr11 39152720 39153309 -82690547 + L1_Mus2 LINE L1 5997 6566 0 2 883 3859 52 28 0 chr11 39153697 39154197 -82689659 + L1Md_F2 LINE L1 5072 5585 -298 2 883 7548 59 15 8 chr11 39154198 39155186 -82688670 + L1Md_F2 LINE L1 5587 6581 -1 2 883 5063 45 0 2 chr11 39156540 39157164 -82686692 - L1Md_F3 LINE L1 -15 6569 5947 2 883 297 0 0 0 chr11 39157534 39157567 -82686289 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 883 211 200 0 0 chr11 39159987 39160037 -82683819 + A-rich Low_complexity Low_complexity 2 51 0 2 883 1092 266 27 0 chr11 39160246 39160509 -82683347 + Lx5 LINE L1 6769 7038 -12 2 883 658 26 0 0 chr11 39160811 39160888 -82682968 - L1_Mus4 LINE L1 -952 5684 5608 2 883 2617 106 8 2 chr11 39160901 39161298 -82682558 + L1_Mus3 LINE L1 6235 6633 -5 2 883 441 0 0 0 chr11 39161299 39161348 -82682508 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 883 28 48 0 0 chr11 39162058 39162100 -82681756 + AT_rich Low_complexity Low_complexity 1 42 0 2 883 22 94 0 0 chr11 39162567 39162631 -82681225 + AT_rich Low_complexity Low_complexity 1 64 0 2 883 1853 46 4 4 chr11 39163201 39163439 -82680417 + L1_Mus2 LINE L1 6329 6566 0 2 883 198 91 0 0 chr11 39163522 39163555 -82680301 + (A)n Simple_repeat Simple_repeat 1 33 0 2 883 251 262 0 16 chr11 39163643 39163705 -82680151 + CT-rich Low_complexity Low_complexity 3 63 0 2 883 330 26 0 0 chr11 39163803 39163842 -82680014 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 883 603 0 0 0 chr11 39163842 39163908 -82679948 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 883 394 176 37 9 chr11 39166263 39166372 -82677484 - Lx4A LINE L1 -1 7057 6946 2 883 405 0 0 0 chr11 39166553 39166598 -82677258 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 883 225 0 0 0 chr11 39166598 39166622 -82677234 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 883 493 338 69 0 chr11 39167099 39167315 -82676541 + MER2 DNA MER2_type 101 331 -14 2 883 210 128 0 0 chr11 39168042 39168081 -82675775 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 883 513 0 0 0 chr11 39168081 39168137 -82675719 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 2 883 1049 102 0 0 chr11 39168716 39168853 -82675003 + B1_Mm SINE Alu 1 137 -10 2 883 1089 207 10 0 chr11 39169232 39169440 -82674416 + Lx4A LINE L1 6848 7057 -1 2 883 270 333 71 12 chr11 39169525 39169610 -82674246 + PB1D10 SINE Alu 7 96 -21 2 883 369 0 0 0 chr11 39169611 39169652 -82674204 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 883 1088 99 0 0 chr11 39170102 39170243 -82673613 + B1_Mus1 SINE Alu 2 142 -6 2 883 273 57 0 0 chr11 39170245 39170280 -82673576 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 883 257 356 106 45 chr11 39170437 39170702 -82673154 - B4A SINE B4 -9 283 3 2 883 1716 36 23 5 chr11 39170708 39170929 -82672927 - L1Md_F3 LINE L1 0 6584 6360 2 883 408 382 74 45 chr11 39171741 39172334 -82671522 + MER90a LTR ERV1 5 614 0 2 883 270 250 0 0 chr11 39172341 39172409 -82671447 + (CAT)n Simple_repeat Simple_repeat 2 69 0 2 883 856 203 109 0 chr11 39172441 39172643 -82671213 + URR1A DNA MER1_type 3 226 0 2 883 270 0 0 0 chr11 39173641 39173671 -82670185 + (A)n Simple_repeat Simple_repeat 1 30 0 2 883 960 57 0 0 chr11 39173710 39173833 -82670023 + (GGGAGA)n Simple_repeat Simple_repeat 4 126 0 2 883 2837 243 38 14 chr11 39174107 39174800 -82669056 + Lx5 LINE L1 6298 7006 -44 2 883 180 77 0 0 chr11 39176453 39176479 -82667377 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2 883 227 323 58 95 chr11 39176500 39176637 -82667219 - B3 SINE B2 -34 182 51 2 883 226 169 102 0 chr11 39176801 39176860 -82666996 - Lx9 LINE L1 -7 7637 7573 2 883 1105 60 0 20 chr11 39177119 39177271 -82666585 - L1_Mus1 LINE L1 0 6567 6419 2 883 2348 53 0 0 chr11 39177272 39177554 -82666302 + L1_Mus1 LINE L1 6094 6375 -192 2 883 261 0 0 0 chr11 39179319 39179348 -82664508 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 883 333 0 0 0 chr11 39179348 39179384 -82664472 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 883 25 83 0 0 chr11 39180091 39180151 -82663705 + AT_rich Low_complexity Low_complexity 1 60 0 2 883 438 225 31 2 chr11 39181386 39181519 -82662337 - RMER1C Other Other -1 1341 1225 2 883 248 0 0 30 chr11 39181519 39181552 -82662304 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 883 246 185 111 0 chr11 39181555 39181609 -82662247 - RMER1C Other Other -251 1091 1032 2 883 2680 54 28 54 chr11 39181612 39181833 -82662023 - L1_Mus3 LINE L1 -633 6005 5795 2 883 1639 57 5 0 chr11 39181833 39182042 -82661814 - L1_Mus1 LINE L1 0 6567 6358 2 883 2680 54 28 54 chr11 39182042 39182211 -82661645 - L1_Mus3 LINE L1 -844 5794 5625 2 883 2811 125 63 0 chr11 39182211 39182723 -82661133 + L1_Mus3 LINE L1 5967 6570 -12 2 883 2553 188 2 11 chr11 39182733 39183211 -82660645 + Lx LINE L1 6161 6634 -20 2 883 369 0 0 0 chr11 39183215 39183256 -82660600 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 883 1628 305 14 27 chr11 39183259 39183747 -82660109 - RMER1C Other Other -305 1037 556 2 883 849 256 52 36 chr11 39183782 39184125 -82659731 + Lx9 LINE L1 5560 5959 -1685 2 883 2871 276 102 59 chr11 39184164 39185645 -82658211 + Lx9 LINE L1 6098 7641 -3 2 883 1794 209 67 5 chr11 39185704 39186107 -82657749 + Lx4B LINE L1 6614 7041 -17 2 883 492 18 0 0 chr11 39186847 39186904 -82656952 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 883 784 129 0 84 chr11 39186973 39187151 -82656705 + Lx2B LINE L1 6837 6999 -1 2 883 21 0 0 0 chr11 39187247 39187268 -82656588 + AT_rich Low_complexity Low_complexity 1 21 0 2 883 351 0 0 0 chr11 39188245 39188284 -82655572 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2 883 36 100 0 0 chr11 39188761 39188881 -82654975 + AT_rich Low_complexity Low_complexity 1 120 0 2 883 2465 61 0 0 chr11 39189433 39189744 -82654112 + L1_Mus2 LINE L1 5818 6128 -438 2 884 977 246 125 23 chr11 39191394 39191738 -82652118 + Lx8 LINE L1 6407 6784 -689 2 884 1814 209 42 51 chr11 39191738 39192046 -82651810 + RMER13B LTR ERVK 368 683 -225 2 884 3257 76 21 0 chr11 39192046 39192478 -82651378 + L1_Mus1 LINE L1 6126 6566 -1 2 884 1814 209 42 51 chr11 39192478 39192618 -82651238 + RMER13B LTR ERVK 684 812 -96 2 884 285 337 0 0 chr11 39192810 39192893 -82650963 + ID4_ SINE ID 1 83 0 2 884 183 42 0 0 chr11 39192894 39192918 -82650938 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 884 279 71 0 0 chr11 39192919 39192961 -82650895 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 3 884 462 18 0 0 chr11 39193145 39193200 -82650656 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 884 395 295 103 38 chr11 39193894 39194155 -82649701 + B4A SINE B4 3 280 -12 3 884 34 24 0 0 chr11 39194373 39194414 -82649442 + AT_rich Low_complexity Low_complexity 1 41 0 3 884 712 117 0 0 chr11 39195242 39195353 -82648503 + L1_Mus2 LINE L1 6456 6566 0 3 884 243 0 0 0 chr11 39196538 39196565 -82647291 + (A)n Simple_repeat Simple_repeat 1 27 0 3 884 267 31 0 0 chr11 39196937 39196969 -82646887 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 3 884 1263 94 0 0 chr11 39196973 39197153 -82646703 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 884 474 18 0 0 chr11 39197156 39197211 -82646645 + (GAAAA)n Simple_repeat Simple_repeat 1 55 0 3 884 1277 184 69 42 chr11 39197211 39197249 -82646607 + MTC LTR MaLR 73 103 -318 3 884 1287 114 119 0 chr11 39197249 39197451 -82646405 + URR1A DNA MER1_type 1 226 0 3 884 1277 184 69 42 chr11 39197451 39197701 -82646155 + MTC LTR MaLR 104 369 -52 3 884 422 0 38 0 chr11 39197702 39197755 -82646101 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 3 884 242 378 26 0 chr11 39197755 39197906 -82645950 + L2 LINE L2 733 887 -2532 3 884 225 189 19 0 chr11 39198534 39198587 -82645269 + T-rich Low_complexity Low_complexity 4 57 0 3 884 24 0 0 0 chr11 39198764 39198788 -82645068 + AT_rich Low_complexity Low_complexity 1 24 0 3 884 183 80 0 0 chr11 39198839 39198864 -82644992 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 884 579 40 0 0 chr11 39199051 39199125 -82644731 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 884 192 135 0 0 chr11 39199126 39199163 -82644693 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 884 195 224 41 82 chr11 39201256 39201329 -82642527 + MIRm SINE MIR 103 172 -104 3 884 198 309 18 18 chr11 39202279 39202335 -82641521 + L3 LINE CR1 4349 4404 -85 3 884 3413 25 0 20 chr11 39202722 39203126 -82640730 - MTA_Mm LTR MaLR 0 396 1 3 884 4305 129 31 33 chr11 39203227 39204048 -82639808 - RMER17B LTR ERVK -26 880 3 3 884 2495 104 76 0 chr11 39204048 39204441 -82639415 + Lx3_Mus LINE L1 6579 7001 -8 3 884 269 273 15 0 chr11 39204517 39204583 -82639273 + ID4 SINE ID 3 69 -14 3 884 584 300 71 42 chr11 39204651 39204834 -82639022 + L1M2 LINE L1 3370 3552 -2591 3 884 442 311 102 15 chr11 39204834 39205030 -82638826 - B3 SINE B2 0 216 4 3 884 584 300 71 42 chr11 39205030 39205393 -82638463 + L1M2 LINE L1 3553 3932 -2211 3 884 491 286 88 9 chr11 39205408 39205634 -82638222 + L1MA8 LINE L1 6044 6287 -4 3 884 21 0 0 0 chr11 39206022 39206043 -82637813 + AT_rich Low_complexity Low_complexity 1 21 0 3 884 331 318 11 33 chr11 39206447 39206629 -82637227 + LTR37B LTR ERV1 291 468 0 3 884 25 0 0 0 chr11 39206699 39206724 -82637132 + AT_rich Low_complexity Low_complexity 1 25 0 3 884 246 62 0 0 chr11 39207815 39207847 -82636009 + (C)n Simple_repeat Simple_repeat 1 32 0 3 884 3061 63 5 2 chr11 39208682 39209077 -82634779 - MTA_Mm LTR MaLR 0 396 1 3 884 226 250 105 32 chr11 39209078 39209092 -82634764 - MER5A DNA MER1_type -1 188 175 3 884 351 0 0 0 chr11 39209092 39209131 -82634725 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 884 226 250 105 32 chr11 39209131 39209211 -82634645 - MER5A DNA MER1_type -15 174 87 3 884 305 221 117 0 chr11 39209212 39209289 -82634567 + PB1 SINE Alu 21 106 -21 3 884 226 115 39 0 chr11 39209628 39209680 -82634176 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 884 242 286 0 14 chr11 39209792 39209863 -82633993 - ID4_ SINE ID -9 74 5 3 884 385 356 22 60 chr11 39210406 39210591 -82633265 + B3A SINE B2 19 196 -2 3 884 8055 52 1 0 chr11 39211880 39212875 -82630981 + L1Md_F2 LINE L1 5587 6582 0 3 884 314 333 70 15 chr11 39212986 39213245 -82630611 + L1M4 LINE L1 5360 5632 -546 3 884 220 262 14 58 chr11 39213639 39213708 -82630148 + RSINE1 SINE B4 64 129 -36 3 884 821 189 113 10 chr11 39213738 39213941 -82629915 - URR1A DNA MER1_type -1 225 2 3 884 264 59 0 0 chr11 39213951 39213985 -82629871 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 3 884 261 0 0 0 chr11 39215084 39215113 -82628743 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 3 884 317 286 157 16 chr11 39215369 39215795 -82628061 - L1MEc LINE L1 -5159 1241 756 3 884 296 295 8 45 chr11 39215943 39216067 -82627789 - PB1D10 SINE Alu 0 120 7 3 884 250 279 33 0 chr11 39216014 39216075 -82627781 - B4A SINE B4 -148 144 82 3 884 766 360 27 18 chr11 39217088 39217688 -82626168 - L1MB3 LINE L1 -96 6087 5483 3 884 427 267 72 30 chr11 39218185 39218351 -82625505 - Lx4B LINE L1 -2 7056 6884 3 884 447 303 6 0 chr11 39218426 39218601 -82625255 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 884 189 169 33 17 chr11 39218902 39218962 -82624894 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 884 679 291 94 73 chr11 39218973 39219344 -82624512 - RLTR30 LTR ERV1 0 379 1 3 884 372 302 66 12 chr11 39219425 39219683 -82624173 - L1M2 LINE L1 -756 5556 5285 3 884 21 57 0 0 chr11 39220575 39220610 -82623246 + AT_rich Low_complexity Low_complexity 1 35 0 3 884 29 60 0 0 chr11 39220709 39220759 -82623097 + AT_rich Low_complexity Low_complexity 1 50 0 3 884 21 36 0 0 chr11 39221561 39221589 -82622267 + AT_rich Low_complexity Low_complexity 1 28 0 3 884 186 43 0 0 chr11 39221666 39221689 -82622167 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 884 477 369 50 64 chr11 39221837 39222118 -82621738 + B4 SINE B4 2 278 -14 3 884 281 311 54 54 chr11 39222498 39222627 -82621229 + RCHARR1 DNA MER1_type 220 348 -626 3 884 379 296 27 53 chr11 39222672 39222822 -82621034 - RSINE1 SINE B4 -2 163 18 3 884 1755 236 59 16 chr11 39222838 39223346 -82620510 + RCHARR1 DNA MER1_type 348 877 -97 3 884 441 340 54 15 chr11 39223789 39223992 -82619864 + B3 SINE B2 1 211 -5 3 884 1446 144 98 70 chr11 39224252 39224580 -82619276 + Lx2 LINE L1 6659 6995 -2 3 884 234 208 56 0 chr11 39226572 39226644 -82617212 + L1MA6 LINE L1 6224 6299 -1 3 884 472 346 44 38 chr11 39226649 39226808 -82617048 + B3A SINE B2 3 162 -36 3 884 399 279 75 119 chr11 39227918 39228082 -82615774 + L1MD2 LINE L1 4643 4799 -1347 3 884 2967 76 2 12 chr11 39228082 39228495 -82615361 + L1Md_F2 LINE L1 6174 6582 0 3 884 399 279 75 119 chr11 39228495 39228648 -82615208 + L1MD2 LINE L1 4800 4946 -1200 3 884 501 214 31 0 chr11 39228775 39228873 -82614983 + B1_Mur2 SINE Alu 47 147 -2 3 884 423 345 87 56 chr11 39229130 39229544 -82614312 + L1MD2 LINE L1 5620 6046 -313 3 884 264 59 0 0 chr11 39229829 39229863 -82613993 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 3 884 669 208 51 28 chr11 39229903 39230081 -82613775 + B2_Mm2 SINE B2 5 186 -9 3 884 636 82 0 10 chr11 39230196 39230295 -82613561 - L1_Mus2 LINE L1 -2 6564 6467 3 884 216 0 0 0 chr11 39231815 39231839 -82612017 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 884 386 361 0 53 chr11 39232558 39232590 -82611266 + B1F SINE Alu 33 63 -86 3 884 1910 20 182 0 chr11 39232590 39232837 -82611019 + RLTR10B LTR ERVK 1 292 0 3 884 386 361 0 53 chr11 39232837 39232918 -82610938 + B1F SINE Alu 64 140 -9 3 884 378 381 6 6 chr11 39233092 39233253 -82610603 - RSINE1 SINE B4 -1 164 4 3 884 290 26 0 25 chr11 39236214 39236254 -82607602 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 884 373 122 27 0 chr11 39236272 39236346 -82607510 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 884 217 283 0 0 chr11 39236362 39236422 -82607434 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 884 364 327 61 25 chr11 39237037 39237200 -82606656 + MIRb SINE MIR 25 193 -75 3 884 4127 217 71 32 chr11 39237712 39239822 -82604034 + Lx5 LINE L1 4771 7045 -5 3 884 550 323 54 0 chr11 39240251 39240437 -82603419 - LTR16C LTR ERVL 0 489 294 3 884 465 190 0 0 chr11 39240438 39240538 -82603318 + (TA)n Simple_repeat Simple_repeat 1 100 0 3 884 387 0 0 0 chr11 39240561 39240604 -82603252 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 884 23 33 0 0 chr11 39240929 39240959 -82602897 + AT_rich Low_complexity Low_complexity 1 30 0 3 884 1669 81 88 11 chr11 39241672 39241750 -82602106 - L1Md_F2 LINE L1 0 6582 6505 3 884 183 80 0 0 chr11 39241750 39241775 -82602081 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 3 884 1669 81 88 11 chr11 39241775 39241958 -82601898 - L1Md_F2 LINE L1 -78 6504 6302 3 884 834 240 43 35 chr11 39242319 39242574 -82601282 + Lx4B LINE L1 6794 7050 -8 3 884 23 54 0 0 chr11 39242750 39242787 -82601069 + AT_rich Low_complexity Low_complexity 1 37 0 3 884 1148 75 0 0 chr11 39243086 39243233 -82600623 + B1_Mus1 SINE Alu 1 147 -1 3 884 325 322 64 18 chr11 39243346 39243564 -82600292 + L1MA4 LINE L1 5677 5904 -396 3 884 1202 224 141 3 chr11 39246099 39246404 -82597452 + MTC-int LTR MaLR 235 581 -677 3 884 25 51 0 0 chr11 39247001 39247040 -82596816 + AT_rich Low_complexity Low_complexity 1 39 0 3 884 1300 314 97 38 chr11 39247183 39247873 -82595983 + L1_Rod LINE L1 4494 5245 -602 3 884 500 42 0 14 chr11 39247873 39247945 -82595911 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 884 1300 314 97 38 chr11 39247945 39248507 -82595349 + L1_Rod LINE L1 5246 5818 -29 3 884 636 152 0 0 chr11 39248603 39248754 -82595102 + CT-rich Low_complexity Low_complexity 1 151 0 3 884 393 22 0 0 chr11 39248754 39248800 -82595056 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 884 1114 236 15 43 chr11 39249178 39249497 -82594359 + Lx2B LINE L1 6697 7000 0 3 884 1815 119 6 76 chr11 39250140 39250484 -82593372 + RMER17A2 LTR ERVK 5 324 -582 3 884 8315 34 0 4 chr11 39250484 39251474 -82592382 - L1Md_T LINE L1 -10 6572 5587 3 884 2952 26 0 0 chr11 39251477 39251823 -82592033 + L1_Mm LINE L1 3485 3830 -2053 3 884 2323 160 10 129 chr11 39251879 39252583 -82591273 + RMER17A2 LTR ERVK 283 902 -4 3 884 22 35 0 0 chr11 39253474 39253503 -82590353 + AT_rich Low_complexity Low_complexity 1 29 0 3 884 304 291 30 24 chr11 39254489 39254658 -82589198 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 4 884 566 294 0 99 chr11 39254710 39254872 -82588984 + B3A SINE B2 11 156 -42 4 884 483 33 0 0 chr11 39254889 39254950 -82588906 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 884 3113 226 50 20 chr11 39255606 39256344 -82587512 + Lx5 LINE L1 6291 7050 0 4 884 4569 32 30 5 chr11 39256564 39257134 -82586722 + L1Md_F3 LINE L1 5987 6570 -14 4 884 189 0 0 0 chr11 39257750 39257771 -82586085 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 884 637 286 24 6 chr11 39257775 39257940 -82585916 - B3 SINE B2 -48 168 1 4 884 252 289 167 12 chr11 39259035 39259119 -82584737 + MLT1D LTR MaLR 49 145 -360 4 884 282 372 84 37 chr11 39259214 39259429 -82584427 + MLT1D LTR MaLR 274 498 -7 4 884 214 345 79 79 chr11 39259463 39259690 -82584166 + B4A SINE B4 14 240 -52 4 884 1570 276 143 14 chr11 39259929 39260481 -82583375 - Lx6 LINE L1 -24 7436 6814 4 884 29 28 0 0 chr11 39261397 39261433 -82582423 + AT_rich Low_complexity Low_complexity 1 36 0 4 884 841 287 15 0 chr11 39261433 39261635 -82582221 - B3 SINE B2 -11 205 1 4 884 587 350 31 35 chr11 39261635 39261856 -82582000 - B4 SINE B4 -71 221 2 4 884 8852 149 28 22 chr11 39262010 39264768 -82579088 + Lx2 LINE L1 4213 6991 -6 4 884 241 340 70 20 chr11 39264783 39264984 -82578872 - Lx8 LINE L1 -28 7445 7235 4 884 304 300 84 26 chr11 39265627 39265781 -82578075 + L1M5 LINE L1 5415 5577 -547 4 884 1158 64 0 0 chr11 39266335 39266476 -82577380 + B1_Mm SINE Alu 1 141 -6 4 884 269 26 26 0 chr11 39266490 39266528 -82577328 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 884 424 286 27 48 chr11 39267498 39267645 -82576211 - RLTR23 LTR ERV1 0 430 287 4 884 1297 138 0 18 chr11 39267950 39268172 -82575684 - Lx2 LINE L1 -1 6996 6779 4 884 248 171 0 41 chr11 39268590 39268663 -82575193 + A-rich Low_complexity Low_complexity 1 70 0 4 884 1942 165 82 8 chr11 39269622 39269977 -82573879 - ORR1B1 LTR MaLR -8 386 6 4 884 476 131 10 20 chr11 39270285 39270386 -82573470 - L1Md_F2 LINE L1 -12 6570 6471 4 884 8926 73 5 1 chr11 39270386 39270713 -82573143 - L1_Mm LINE L1 -316 5567 5236 4 884 275 38 75 0 chr11 39270713 39270766 -82573090 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 884 8926 73 5 1 chr11 39270766 39271616 -82572240 - L1_Mm LINE L1 -648 5235 4386 4 884 5501 70 3 0 chr11 39271614 39272348 -82571508 + L1_Mm LINE L1 3470 4205 -1678 4 884 396 71 0 0 chr11 39272348 39272404 -82571452 + L1_Mm LINE L1 4321 4376 -1507 4 884 483 263 48 55 chr11 39273792 39273937 -82569919 + B1_Mur3 SINE Alu 5 148 -1 4 884 202 128 0 25 chr11 39273939 39273979 -82569877 + (CAA)n Simple_repeat Simple_repeat 2 40 0 4 884 3485 115 11 8 chr11 39274020 39274545 -82569311 + Lx2 LINE L1 6471 6997 0 4 884 521 289 22 71 chr11 39274907 39275131 -82568725 - B3A SINE B2 0 216 8 4 884 204 182 0 0 chr11 39275212 39275256 -82568600 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 884 658 299 70 24 chr11 39275454 39275752 -82568104 + Lx9 LINE L1 7120 7431 -213 4 884 270 0 0 0 chr11 39275779 39275809 -82568047 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 884 23 0 0 0 chr11 39276001 39276024 -82567832 + AT_rich Low_complexity Low_complexity 1 23 0 4 884 849 289 125 16 chr11 39276490 39276812 -82567044 + MTD LTR MaLR 58 405 -14 4 884 407 357 127 37 chr11 39276821 39277010 -82566846 - B4 SINE B4 -85 207 2 4 884 593 164 9 0 chr11 39277023 39277139 -82566717 + GA-rich Low_complexity Low_complexity 1 117 0 4 884 303 182 0 0 chr11 39277137 39277214 -82566642 + (CAA)n Simple_repeat Simple_repeat 2 78 0 4 884 255 283 19 48 chr11 39277322 39277426 -82566430 - MTEb LTR MaLR -4 375 275 4 884 591 327 40 0 chr11 39278353 39278503 -82565353 + RSINE1 SINE B4 3 158 -7 4 884 516 32 0 0 chr11 39278520 39278582 -82565274 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 884 25 0 0 0 chr11 39278694 39278719 -82565137 + AT_rich Low_complexity Low_complexity 1 25 0 4 884 368 310 50 50 chr11 39279683 39279863 -82563993 - RMER30 DNA MER1_type -14 188 9 4 884 1021 290 52 21 chr11 39280096 39280477 -82563379 - Lx6 LINE L1 -27 7433 7041 4 884 787 201 119 7 chr11 39280967 39281249 -82562607 + ORR1A3 LTR MaLR 1 314 -12 4 884 729 318 51 76 chr11 39281256 39281610 -82562246 - MTEa LTR MaLR -32 347 3 4 884 554 231 0 45 chr11 39282206 39282360 -82561496 + Lx4B LINE L1 6912 7058 0 4 884 664 193 21 7 chr11 39282779 39282920 -82560936 + Lx3B LINE L1 6828 6970 -3 4 884 234 0 0 0 chr11 39283739 39283765 -82560091 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 884 669 134 0 0 chr11 39284132 39284244 -82559612 + (CA)n Simple_repeat Simple_repeat 1 112 0 4 884 533 337 49 30 chr11 39284779 39285042 -82558814 + B4A SINE B4 14 281 -11 4 884 419 293 81 25 chr11 39285255 39285416 -82558440 + B3 SINE B2 7 176 -40 4 884 3937 169 6 4 chr11 39285821 39286516 -82557340 - Lx2B LINE L1 -2 6998 6303 4 884 25 0 0 0 chr11 39287247 39287272 -82556584 + AT_rich Low_complexity Low_complexity 1 25 0 4 884 740 270 97 37 chr11 39287307 39287576 -82556280 + B4 SINE B4 2 286 -6 4 884 225 94 0 0 chr11 39287625 39287657 -82556199 + (CATA)n Simple_repeat Simple_repeat 4 35 0 4 884 21 36 0 0 chr11 39287690 39287718 -82556138 + AT_rich Low_complexity Low_complexity 1 28 0 4 884 194 300 32 53 chr11 39288043 39288138 -82555718 + L2 LINE L2 2690 2782 -637 4 884 243 407 67 35 chr11 39288923 39289236 -82554620 - MER74A LTR ERVL 0 558 236 4 884 180 77 0 0 chr11 39289462 39289488 -82554368 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 4 884 24 0 0 0 chr11 39291495 39291519 -82552337 + AT_rich Low_complexity Low_complexity 1 24 0 4 884 572 303 33 0 chr11 39291648 39291800 -82552056 + RSINE1 SINE B4 1 157 -8 4 884 1612 133 66 7 chr11 39292160 39292433 -82551423 + Lx3_Mus LINE L1 6648 6936 -73 4 884 224 0 65 0 chr11 39292435 39292466 -82551390 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 884 35 95 0 0 chr11 39292466 39292571 -82551285 + AT_rich Low_complexity Low_complexity 1 105 0 4 884 651 13 0 0 chr11 39292827 39292903 -82550953 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 884 245 113 0 70 chr11 39292979 39293065 -82550791 + T-rich Low_complexity Low_complexity 1 80 0 4 884 1065 82 7 0 chr11 39293065 39293211 -82550645 - B1_Mus1 SINE Alu 0 148 2 4 884 360 0 0 0 chr11 39293213 39293253 -82550603 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 4 884 1099 97 13 0 chr11 39293255 39293410 -82550446 - B2_Mm2 SINE B2 -38 157 1 4 884 630 313 156 23 chr11 39294020 39294661 -82549195 + L1_Mur3 LINE L1 306 1031 -6697 4 884 1027 221 32 29 chr11 39294665 39294945 -82548911 + L1_Mur3 LINE L1 2530 2810 -3070 4 884 9337 81 9 1 chr11 39294944 39296256 -82547600 - L1Md_F2 LINE L1 -643 5923 4597 4 884 3909 92 70 31 chr11 39296254 39296873 -82546983 + L1Md_F2 LINE L1 5920 6562 -20 4 884 1609 176 72 82 chr11 39296909 39297346 -82546510 + L1_Mur3 LINE L1 2799 3230 -2650 4 884 525 68 0 0 chr11 39297346 39297420 -82546436 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 4 884 1609 176 72 82 chr11 39297420 39297564 -82546292 + L1_Mur3 LINE L1 3231 3374 -2506 4 884 294 29 0 0 chr11 39297575 39297610 -82546246 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 4 884 243 0 0 0 chr11 39297653 39297680 -82546176 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 4 884 993 178 11 6 chr11 39297685 39297860 -82545996 - B2_Mm2 SINE B2 -18 177 2 4 884 4204 222 75 31 chr11 39297860 39299138 -82544718 + L1_Mur3 LINE L1 3362 4695 -1182 4 884 32924 88 4 18 chr11 39299137 39303809 -82540047 - L1Md_F2 LINE L1 -11 6571 1978 4 884 210 37 0 0 chr11 39303809 39303836 -82540020 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 884 32924 101 41 11 chr11 39303836 39305167 -82538689 - L1Md_F2 LINE L1 -3906 1977 594 4 884 1957 202 41 5 chr11 39305169 39305612 -82538244 + L1_Mur3 LINE L1 4687 5145 -735 4 884 4625 259 74 22 chr11 39305613 39306892 -82536964 + Lx6 LINE L1 6115 7460 0 4 884 24 67 0 0 chr11 39306941 39306986 -82536870 + AT_rich Low_complexity Low_complexity 1 45 0 4 884 244 242 33 0 chr11 39308090 39308243 -82535613 + (TA)n Simple_repeat Simple_repeat 2 159 0 4 884 423 0 0 0 chr11 39309096 39309143 -82534713 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 884 450 0 0 0 chr11 39309147 39309197 -82534659 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 884 403 262 32 8 chr11 39309373 39309496 -82534360 + L1M3 LINE L1 5643 5768 -415 4 884 372 111 0 0 chr11 39309507 39309570 -82534286 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 884 202 29 57 0 chr11 39310066 39310101 -82533755 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 884 225 0 0 0 chr11 39310101 39310125 -82533731 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 884 277 389 76 8 chr11 39310782 39311018 -82532838 + MER113 DNA MER1_type 38 289 -232 4 884 4156 184 9 18 chr11 39311118 39312473 -82531383 + L1VL4 LINE L1 397 1745 -1814 4 884 797 150 13 13 chr11 39312477 39312626 -82531230 + L1_Mur2 LINE L1 2323 2471 -3406 4 884 336 102 0 0 chr11 39312626 39312675 -82531181 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 884 2530 90 97 5 chr11 39313607 39313988 -82529868 - L1_Mus2 LINE L1 -2 6564 6149 4 884 2019 71 42 48 chr11 39313991 39314166 -82529690 + L1_Mus2 LINE L1 5841 6028 -538 4 884 5774 45 10 3 chr11 39314166 39314883 -82528973 + L1Md_F2 LINE L1 5858 6579 -3 4 884 2019 71 42 48 chr11 39314883 39315018 -82528838 + L1_Mus2 LINE L1 6029 6149 -417 4 884 958 136 0 7 chr11 39315021 39315162 -82528694 + B1_Mus1 SINE Alu 3 142 -6 4 884 408 200 0 0 chr11 39315595 39315690 -82528166 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 884 489 34 0 0 chr11 39315785 39315844 -82528012 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 884 1553 146 27 27 chr11 39316929 39317225 -82526631 + Lx2 LINE L1 6702 6997 0 4 884 405 0 0 0 chr11 39317431 39317476 -82526380 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 884 481 333 28 7 chr11 39317486 39317631 -82526225 - RSINE1 SINE B4 -4 161 14 4 884 382 299 21 0 chr11 39318261 39318358 -82525498 - B3 SINE B2 -109 107 9 4 884 180 77 0 0 chr11 39318536 39318562 -82525294 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4 884 3760 207 120 14 chr11 39318564 39319489 -82524367 - Lx4B LINE L1 -17 7041 6019 5 884 396 0 0 0 chr11 39321537 39321581 -82522275 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 885 22 0 0 0 chr11 39322064 39322086 -82521770 + AT_rich Low_complexity Low_complexity 1 22 0 5 885 226 350 0 0 chr11 39322867 39322927 -82520929 - B3 SINE B2 -66 150 91 5 885 2833 64 5 5 chr11 39323079 39323497 -82520359 + L1Md_F2 LINE L1 6203 6582 0 5 885 342 0 0 0 chr11 39323623 39323661 -82520195 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 885 1247 78 0 11 chr11 39323764 39323946 -82519910 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 885 513 0 0 0 chr11 39323965 39324022 -82519834 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 885 203 147 0 0 chr11 39325678 39325712 -82518144 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 885 183 100 0 0 chr11 39326070 39326100 -82517756 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 885 1077 88 0 7 chr11 39326100 39326248 -82517608 - B1_Mus1 SINE Alu 0 148 2 5 885 350 291 33 33 chr11 39326485 39326606 -82517250 + B4A SINE B4 172 292 0 5 885 286 331 30 85 chr11 39327046 39327211 -82516645 - RSINE1 SINE B4 -7 158 3 5 885 675 314 129 19 chr11 39327213 39327806 -82516050 + L1MA6 LINE L1 5545 6203 -97 5 885 22 0 0 0 chr11 39328269 39328291 -82515565 + AT_rich Low_complexity Low_complexity 1 22 0 5 885 207 0 0 0 chr11 39328792 39328815 -82515041 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 885 367 256 96 37 chr11 39330152 39330339 -82513517 - Lx8 LINE L1 -22 7451 7254 5 885 288 0 0 0 chr11 39331470 39331502 -82512354 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 885 822 79 8 8 chr11 39332106 39332234 -82511622 - L1_Mus2 LINE L1 0 6566 6439 5 885 1103 206 111 32 chr11 39335742 39336058 -82507798 - Lx7 LINE L1 0 7696 7356 5 885 300 282 103 37 chr11 39336058 39336194 -82507662 + HAL1-3A_ME LINE L1 2294 2438 -420 5 885 39 60 0 0 chr11 39336205 39336272 -82507584 + AT_rich Low_complexity Low_complexity 1 67 0 5 885 365 259 25 41 chr11 39336283 39336404 -82507452 - Lx7 LINE L1 -329 7367 7249 5 885 1371 62 0 0 chr11 39336424 39336602 -82507254 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 5 885 542 195 34 8 chr11 39336612 39336731 -82507125 + Lx3A LINE L1 6846 6967 -14 5 885 339 315 20 34 chr11 39336793 39336941 -82506915 + ORR1D2 LTR MaLR 1 146 -238 5 885 359 266 184 5 chr11 39337091 39337276 -82506580 + ORR1D2 LTR MaLR 153 370 0 5 885 27 0 0 0 chr11 39340800 39340827 -82503029 + AT_rich Low_complexity Low_complexity 1 27 0 5 885 441 0 0 0 chr11 39341350 39341399 -82502457 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 885 234 0 0 0 chr11 39341399 39341424 -82502432 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 885 629 347 50 25 chr11 39341462 39341740 -82502116 - B4A SINE B4 -2 290 6 5 885 3888 254 38 30 chr11 39341898 39342842 -82501014 + Lx6 LINE L1 6505 7456 -4 5 885 4171 15 0 0 chr11 39343609 39344081 -82499775 + L1Md_A LINE L1 6111 6582 0 5 885 471 368 99 18 chr11 39344090 39344422 -82499434 - MTD LTR MaLR -60 359 1 5 885 302 298 124 44 chr11 39345157 39345294 -82498562 + B4 SINE B4 2 149 -143 5 885 203 184 0 0 chr11 39345687 39345725 -82498131 + T-rich Low_complexity Low_complexity 3 40 0 5 885 479 312 76 52 chr11 39346122 39346372 -82497484 - MLT1A0 LTR MaLR -80 285 30 5 885 293 319 32 0 chr11 39346383 39346477 -82497379 - PB1D10 SINE Alu 0 117 21 5 885 350 317 49 14 chr11 39347366 39347510 -82496346 - B1_Mur1 SINE Alu 0 149 1 5 885 7037 194 57 68 chr11 39347741 39347988 -82495868 + Lx5 LINE L1 4027 4283 -1594 5 885 1403 39 0 16 chr11 39347988 39348171 -82495685 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 885 7037 233 70 74 chr11 39348171 39350973 -82492883 + Lx5 LINE L1 4284 7046 -4 5 885 2960 80 19 9 chr11 39350988 39351418 -82492438 + L1_Mus3 LINE L1 6205 6638 0 5 885 343 266 11 0 chr11 39351491 39351589 -82492267 + B3 SINE B2 30 130 -68 5 885 333 0 0 0 chr11 39351619 39351656 -82492200 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 885 270 0 0 0 chr11 39351657 39351687 -82492169 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 885 399 73 0 0 chr11 39352717 39352772 -82491084 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 885 252 0 0 0 chr11 39353143 39353171 -82490685 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 885 1049 116 0 0 chr11 39353416 39353562 -82490294 + B1_Mm SINE Alu 1 146 -1 5 885 24 53 0 0 chr11 39353780 39353818 -82490038 + AT_rich Low_complexity Low_complexity 1 38 0 5 885 218 259 0 0 chr11 39353818 39353876 -82489980 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 885 763 261 20 0 chr11 39353907 39354060 -82489796 - B3A SINE B2 -38 160 5 5 885 7642 61 3 13 chr11 39354072 39355369 -82488487 - L1Md_F2 LINE L1 0 6582 5294 5 885 1596 21 0 11 chr11 39355369 39355557 -82488299 - B2_Mm1a SINE B2 -7 186 1 5 885 4669 61 0 16 chr11 39355557 39355579 -82488277 - L1Md_F2 LINE L1 -590 5293 5281 5 885 454 164 81 10 chr11 39355941 39356138 -82487718 + RMER17D2 LTR ERVK 296 506 -303 5 885 193 296 133 22 chr11 39358284 39358419 -82485437 + MIRb SINE MIR 108 257 -11 5 885 453 356 86 3 chr11 39359800 39360111 -82483745 + MER44B DNA MER2_type 9 343 -207 5 885 24 0 0 0 chr11 39360751 39360775 -82483081 + AT_rich Low_complexity Low_complexity 1 24 0 5 885 429 261 0 11 chr11 39361243 39361336 -82482520 + PB1D10 SINE Alu 17 108 -9 5 885 360 322 35 56 chr11 39361532 39361850 -82482006 + Lx9 LINE L1 7169 7464 -9 5 885 2553 196 107 7 chr11 39362320 39362880 -82480976 + Lx4B LINE L1 6424 7039 -19 5 885 302 43 0 61 chr11 39362880 39362929 -82480927 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 5 885 21 36 0 0 chr11 39364131 39364159 -82479697 + AT_rich Low_complexity Low_complexity 1 28 0 5 885 288 363 8 39 chr11 39364866 39364880 -82478976 - B1_Mur3 SINE Alu -24 125 114 5 885 276 77 0 0 chr11 39364880 39364919 -82478937 + (TTG)n Simple_repeat Simple_repeat 2 40 0 5 885 288 363 8 39 chr11 39364919 39365033 -82478823 - B1_Mur3 SINE Alu -36 113 1 5 885 22 35 0 0 chr11 39365363 39365392 -82478464 + AT_rich Low_complexity Low_complexity 1 29 0 5 885 246 121 60 15 chr11 39365496 39365563 -82478293 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 885 22 0 0 0 chr11 39366027 39366049 -82477807 + AT_rich Low_complexity Low_complexity 1 22 0 5 885 189 159 0 0 chr11 39366132 39366176 -82477680 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 885 39 68 0 0 chr11 39366181 39366255 -82477601 + AT_rich Low_complexity Low_complexity 1 74 0 5 885 1040 320 77 12 chr11 39367041 39367443 -82476413 - Tigger7 DNA MER2_type -1995 496 69 5 885 4289 172 91 16 chr11 39367453 39368335 -82475521 - Lx3C LINE L1 -2 6974 6027 5 885 26 64 0 0 chr11 39368707 39368754 -82475102 + AT_rich Low_complexity Low_complexity 1 47 0 5 885 213 39 0 0 chr11 39368922 39368948 -82474908 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 885 615 67 0 0 chr11 39368948 39369036 -82474820 + (GA)n Simple_repeat Simple_repeat 1 89 0 5 885 346 351 13 51 chr11 39369181 39369337 -82474519 - B4 SINE B4 -141 151 2 5 885 249 198 30 0 chr11 39369526 39369627 -82474229 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 885 477 71 0 0 chr11 39372804 39372874 -82470982 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 885 207 88 0 0 chr11 39372874 39372907 -82470949 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 5 885 870 103 14 7 chr11 39372908 39373054 -82470802 + (GAA)n Simple_repeat Simple_repeat 3 149 0 5 885 263 286 8 0 chr11 39373063 39373196 -82470660 + GA-rich Low_complexity Low_complexity 1 134 0 5 885 639 323 48 69 chr11 39373203 39373622 -82470234 - Kanga1a DNA Tc2 -223 531 122 5 885 228 246 0 0 chr11 39373706 39373767 -82470089 + A-rich Low_complexity Low_complexity 1 61 0 5 885 527 307 100 18 chr11 39374223 39374452 -82469404 + MTEb LTR MaLR 127 374 -5 5 885 25 0 0 0 chr11 39374625 39374650 -82469206 + AT_rich Low_complexity Low_complexity 1 25 0 5 885 279 162 0 51 chr11 39375176 39375254 -82468602 + GA-rich Low_complexity Low_complexity 3 76 0 5 885 212 268 18 0 chr11 39375269 39375325 -82468531 + GA-rich Low_complexity Low_complexity 1 57 0 5 885 6784 150 17 18 chr11 39375703 39376902 -82466954 + Lx2 LINE L1 5784 6981 -16 5 885 260 304 50 2 chr11 39377600 39377699 -82466157 + PB1D9 SINE Alu 13 115 -5 5 885 421 262 0 0 chr11 39377701 39377806 -82466050 + Lx9 LINE L1 7108 7196 -448 5 885 543 284 75 32 chr11 39378019 39378259 -82465597 + MTE2a LTR MaLR 112 373 -48 5 885 346 391 32 0 chr11 39379242 39379398 -82464458 + RSINE1 SINE B4 5 165 0 5 885 657 92 9 9 chr11 39379453 39379551 -82464305 + ORR1A3 LTR MaLR 139 283 -87 5 885 1843 137 31 37 chr11 39379938 39380264 -82463592 - ORR1A3 LTR MaLR 0 326 3 5 885 249 33 0 0 chr11 39380503 39380533 -82463323 + (T)n Simple_repeat Simple_repeat 1 30 0 5 885 1097 89 0 0 chr11 39380533 39380679 -82463177 - B1_Mus2 SINE Alu 0 147 2 5 885 348 103 0 0 chr11 39380914 39380972 -82462884 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 885 297 118 0 0 chr11 39380972 39381023 -82462833 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 885 23 0 0 0 chr11 39381025 39381048 -82462808 + AT_rich Low_complexity Low_complexity 1 23 0 5 885 21 0 0 0 chr11 39381081 39381102 -82462754 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 495 279 7 56 chr11 39381263 39381407 -82462449 - B1_Mur2 SINE Alu 0 149 13 5 885 423 0 0 0 chr11 39382456 39382503 -82461353 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 885 623 181 12 12 chr11 39383148 39383316 -82460540 - Lx9 LINE L1 -1 7643 7476 5 885 1139 299 0 22 chr11 39383334 39383655 -82460201 - Lx8 LINE L1 -137 7336 7023 5 885 22 0 0 0 chr11 39385897 39385919 -82457937 + AT_rich Low_complexity Low_complexity 1 22 0 6 885 1408 285 121 95 chr11 39386462 39387180 -82456676 + RMER19A LTR ERVK 1 737 0 6 885 778 24 8 53 chr11 39388419 39388550 -82455306 + L1Md_F2 LINE L1 6457 6581 -1 6 885 525 44 0 0 chr11 39388582 39388650 -82455206 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 885 449 265 16 3 chr11 39388664 39388832 -82455024 + L1MA6 LINE L1 6029 6200 -97 6 885 606 219 81 81 chr11 39389098 39389321 -82454535 + Lx5 LINE L1 6822 7044 -6 6 885 243 294 44 67 chr11 39389365 39389383 -82454473 - MT2A LTR ERVL -35 440 421 6 885 303 28 0 0 chr11 39389383 39389419 -82454437 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 6 885 909 298 47 75 chr11 39389419 39389898 -82453958 - MT2A LTR ERVL -72 461 1 6 885 360 353 80 23 chr11 39389907 39390153 -82453703 + RMER5 LTR ERV1 144 404 -130 6 885 1373 223 29 91 chr11 39390153 39390451 -82453405 + ORR1A4 LTR MaLR 1 273 -56 6 885 2776 101 5 19 chr11 39390451 39390863 -82452993 + Lx LINE L1 6235 6644 -10 6 885 420 20 0 0 chr11 39390863 39390912 -82452944 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 6 885 2776 101 5 19 chr11 39390912 39390923 -82452933 + Lx LINE L1 6645 6652 -2 6 885 1373 223 29 91 chr11 39390923 39390975 -82452881 + ORR1A4 LTR MaLR 274 328 -1 6 885 184 344 43 32 chr11 39391221 39391314 -82452542 - L2a LINE L2 -299 3127 3034 6 885 231 247 11 76 chr11 39391328 39391420 -82452436 - MIRb SINE MIR -59 209 124 6 885 207 133 0 0 chr11 39391423 39391468 -82452388 + (T)n Simple_repeat Simple_repeat 1 45 0 6 885 315 104 0 0 chr11 39391609 39391657 -82452199 + (CCCTG)n Simple_repeat Simple_repeat 3 50 0 6 885 565 292 0 0 chr11 39392085 39392229 -82451627 + B1_Mur1 SINE Alu 1 144 -5 6 885 1017 67 0 0 chr11 39392234 39392368 -82451488 + (TAGA)n Simple_repeat Simple_repeat 1 134 0 6 885 393 149 0 0 chr11 39392424 39392491 -82451365 + (A)n Simple_repeat Simple_repeat 1 67 0 6 885 2754 136 7 2 chr11 39393463 39393899 -82449957 + L1_Mus3 LINE L1 6195 6632 -6 6 885 447 194 0 0 chr11 39394001 39394094 -82449762 + T-rich Low_complexity Low_complexity 1 93 0 6 885 23 0 0 0 chr11 39394462 39394485 -82449371 + AT_rich Low_complexity Low_complexity 1 23 0 6 885 625 277 75 12 chr11 39394519 39394680 -82449176 - B3A SINE B2 -25 173 3 6 885 189 0 0 0 chr11 39395671 39395692 -82448164 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 885 297 336 34 60 chr11 39395763 39395880 -82447976 + B1_Mur2 SINE Alu 6 119 -1 6 885 580 340 56 23 chr11 39396457 39396671 -82447185 - ID_B1 SINE B4 -1 223 3 6 885 24 0 0 0 chr11 39396682 39396706 -82447150 + AT_rich Low_complexity Low_complexity 1 24 0 6 885 25 65 0 0 chr11 39398183 39398229 -82445627 + AT_rich Low_complexity Low_complexity 1 46 0 6 885 646 289 225 19 chr11 39398497 39398681 -82445175 + ORR1D2 LTR MaLR 1 203 -167 6 885 848 61 30 0 chr11 39398681 39398813 -82445043 + (TC)n Simple_repeat Simple_repeat 1 136 0 6 885 646 289 225 19 chr11 39398813 39398935 -82444921 + ORR1D2 LTR MaLR 204 369 -1 6 885 944 153 6 0 chr11 39399854 39400024 -82443832 + GA-rich Low_complexity Low_complexity 1 171 0 6 885 292 274 140 47 chr11 39400073 39400180 -82443676 - PB1D10 SINE Alu 0 117 1 6 885 783 140 0 0 chr11 39400814 39400985 -82442871 + (GA)n Simple_repeat Simple_repeat 2 172 0 6 885 1101 74 0 0 chr11 39401438 39401586 -82442270 + (TTTCC)n Simple_repeat Simple_repeat 3 150 0 6 885 192 174 0 0 chr11 39401586 39401621 -82442235 + T-rich Low_complexity Low_complexity 2 36 0 6 885 238 395 12 95 chr11 39401859 39402027 -82441829 + RSINE1 SINE B4 12 165 0 6 885 24 0 0 0 chr11 39402053 39402077 -82441779 + AT_rich Low_complexity Low_complexity 1 24 0 6 885 504 0 0 0 chr11 39402169 39402225 -82441631 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 885 205 311 16 0 chr11 39402225 39402286 -82441570 + GA-rich Low_complexity Low_complexity 2 63 0 6 885 239 267 18 82 chr11 39403564 39403674 -82440182 - MLT1C LTR MaLR -44 423 321 6 885 532 255 59 48 chr11 39404470 39404641 -82439215 - RMER17C LTR ERVK -29 381 212 6 885 401 93 0 26 chr11 39404641 39404718 -82439138 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 6 885 532 269 66 35 chr11 39404718 39404894 -82438962 - RMER17C LTR ERVK -199 211 2 6 885 361 281 37 67 chr11 39405315 39405479 -82438377 + RLTR14 LTR ERV1 224 382 0 6 885 304 367 11 48 chr11 39405618 39405804 -82438052 + B4A SINE B4 1 179 -113 6 885 321 129 24 57 chr11 39405814 39405937 -82437919 + T-rich Low_complexity Low_complexity 3 121 0 6 885 205 229 0 28 chr11 39405952 39406024 -82437832 + T-rich Low_complexity Low_complexity 3 72 0 6 885 2028 163 0 51 chr11 39406148 39406580 -82437276 + RMER17C LTR ERVK 1 410 0 6 885 597 296 141 57 chr11 39406800 39407062 -82436794 + B4A SINE B4 9 292 0 6 885 249 210 0 0 chr11 39407080 39407142 -82436714 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 885 199 328 77 62 chr11 39408038 39408168 -82435688 - L2 LINE L2 -971 2448 2317 6 885 35 41 0 0 chr11 39410395 39410444 -82433412 + AT_rich Low_complexity Low_complexity 1 49 0 6 885 342 0 0 0 chr11 39411831 39411869 -82431987 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 885 270 160 0 0 chr11 39412745 39412795 -82431061 + GA-rich Low_complexity Low_complexity 2 51 0 6 885 1173 113 0 0 chr11 39412796 39412973 -82430883 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 6 885 288 0 0 0 chr11 39414461 39414493 -82429363 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 885 248 222 19 0 chr11 39414507 39414561 -82429295 + L1MC1 LINE L1 6008 6062 -271 6 885 597 204 0 0 chr11 39414567 39414807 -82429049 + (CCA)n Simple_repeat Simple_repeat 1 240 0 6 885 356 322 132 5 chr11 39414807 39415019 -82428837 + L1MC1 LINE L1 6077 6315 -18 6 885 3327 48 0 0 chr11 39415122 39415518 -82428338 + MTA_Mm LTR MaLR 1 396 0 6 885 454 339 17 34 chr11 39415879 39416056 -82427800 - MIR SINE MIR -88 174 1 6 885 519 45 0 0 chr11 39416670 39416736 -82427120 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 885 200 306 198 27 chr11 39417571 39417682 -82426174 + MIRb SINE MIR 117 246 -22 6 885 225 333 33 0 chr11 39419091 39419151 -82424705 + ID SINE ID 22 83 -141 6 885 29 0 0 0 chr11 39419344 39419373 -82424483 + AT_rich Low_complexity Low_complexity 1 29 0 6 885 246 308 72 43 chr11 39419468 39419625 -82424231 + MIR SINE MIR 11 179 -97 6 885 775 344 50 24 chr11 39419671 39419721 -82424135 - MTEa LTR MaLR -23 356 307 6 885 388 0 0 37 chr11 39419721 39419775 -82424081 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 6 885 775 344 50 24 chr11 39419775 39420063 -82423793 - MTEa LTR MaLR -73 306 9 6 885 723 186 0 0 chr11 39420598 39420754 -82423102 + (TA)n Simple_repeat Simple_repeat 2 157 0 6 885 285 75 0 0 chr11 39421096 39421136 -82422720 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 885 242 148 25 34 chr11 39421143 39421262 -82422594 + (TA)n Simple_repeat Simple_repeat 1 118 0 6 885 2016 262 14 40 chr11 39421485 39422005 -82421851 - RMER1A Other Other -17 1013 508 6 885 430 250 22 7 chr11 39422348 39422485 -82421371 - MER44B DNA MER2_type -64 486 348 6 885 703 288 55 57 chr11 39422620 39422931 -82420925 - ORR1E LTR MaLR -6 364 6 6 885 308 179 19 26 chr11 39423063 39423218 -82420638 + (TA)n Simple_repeat Simple_repeat 2 155 0 6 885 582 54 0 0 chr11 39425163 39425237 -82418619 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 885 246 375 75 14 chr11 39425686 39425832 -82418024 - MER117 DNA MER1_type -41 156 2 6 885 191 423 14 42 chr11 39425887 39426030 -82417826 + L2c LINE L2 3026 3164 -223 6 885 217 244 0 0 chr11 39426517 39426558 -82417298 + T-rich Low_complexity Low_complexity 2 42 0 6 885 2441 64 81 9 chr11 39427300 39427633 -82416223 + IAPEY2_LTR LTR ERVK 1 357 0 6 885 1410 12 18 0 chr11 39428515 39428686 -82415170 - L1Md_A LINE L1 0 6582 6409 6 885 3897 98 18 2 chr11 39429958 39430522 -82413334 + MT2B2 LTR ERVL 1 573 -11 6 885 1013 246 73 51 chr11 39430533 39430915 -82412941 + MERVL-int LTR ERVL 8 378 -5107 6 885 1416 174 6 1 chr11 39430909 39431167 -82412689 + MERVL-int LTR ERVL 514 885 -4876 6 885 941 88 29 0 chr11 39431167 39431303 -82412553 + MT2B2 LTR ERVL 445 584 0 6 885 323 341 70 58 chr11 39431371 39431869 -82411987 - MLT1D LTR MaLR -1 504 1 6 885 441 0 0 0 chr11 39433335 39433384 -82410472 + (CATA)n Simple_repeat Simple_repeat 2 50 0 6 885 26 0 0 0 chr11 39434280 39434306 -82409550 + AT_rich Low_complexity Low_complexity 1 26 0 6 885 1098 246 0 0 chr11 39434427 39434634 -82409222 - B3 SINE B2 -5 211 5 6 885 198 0 0 0 chr11 39434770 39434792 -82409064 + (T)n Simple_repeat Simple_repeat 1 22 0 6 885 5818 137 26 7 chr11 39435104 39436498 -82407358 + Lx2 LINE L1 5070 6493 -504 6 885 2314 47 0 0 chr11 39436496 39436775 -82407081 + L1Md_T LINE L1 6297 6575 -7 6 885 1016 114 0 0 chr11 39436793 39436933 -82406923 + Lx2 LINE L1 6489 6628 -369 6 885 1228 133 22 18 chr11 39436933 39437162 -82406694 + Lx2 LINE L1 6762 6991 -6 6 885 465 19 0 0 chr11 39437501 39437555 -82406301 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 6 885 36 40 0 0 chr11 39437780 39437830 -82406026 + AT_rich Low_complexity Low_complexity 1 50 0 6 885 610 153 36 7 chr11 39437879 39438017 -82405839 - Lx LINE L1 -15 6639 6498 6 885 464 161 11 0 chr11 39438022 39438109 -82405747 + Lx2 LINE L1 6683 6770 -227 6 885 788 161 0 30 chr11 39438175 39438341 -82405515 - Lx LINE L1 0 6654 6494 6 885 388 329 15 7 chr11 39439092 39439217 -82404639 + PB1D10 SINE Alu 2 126 -23 6 885 7957 122 28 26 chr11 39440472 39442547 -82401309 + L1VL1 LINE L1 221 2302 -1396 6 885 9394 132 9 66 chr11 39442545 39443416 -82400440 + L1_Mus3 LINE L1 4260 5128 -755 6 885 1116 75 0 0 chr11 39443416 39443562 -82400294 + B1_Mm SINE Alu 2 147 0 6 885 9394 113 53 25 chr11 39443562 39445091 -82398765 + L1_Mus3 LINE L1 5129 6632 -6 6 885 1635 318 38 12 chr11 39445403 39446007 -82397849 + Lx8 LINE L1 6512 7131 -342 6 885 285 183 0 0 chr11 39446209 39446269 -82397587 + T-rich Low_complexity Low_complexity 1 60 0 6 885 1085 109 0 0 chr11 39446272 39446419 -82397437 - B1_Mus1 SINE Alu 0 148 2 6 885 1179 97 56 22 chr11 39446544 39446724 -82397132 + B2_Mm2 SINE B2 1 186 -9 6 885 1181 336 90 29 chr11 39447468 39448231 -82395625 + Lx8 LINE L1 6627 7436 -37 7 885 517 252 45 0 chr11 39448744 39448855 -82395001 - B1F2 SINE Alu -8 141 26 7 885 361 333 57 17 chr11 39449133 39449310 -82394546 + RMER15 LTR ERVL 300 483 -92 7 885 2213 63 3 41 chr11 39449424 39449740 -82394116 - L1_Mus2 LINE L1 0 6566 6263 7 885 1077 84 0 0 chr11 39450165 39450307 -82393549 - B1_Mus1 SINE Alu -5 143 2 7 885 23 54 0 0 chr11 39450898 39450935 -82392921 + AT_rich Low_complexity Low_complexity 1 37 0 7 885 309 280 28 90 chr11 39450964 39451109 -82392747 - RSINE1 SINE B4 -26 139 4 7 885 980 134 160 5 chr11 39451832 39452020 -82391836 - URR1A DNA MER1_type 0 226 10 7 885 547 254 76 8 chr11 39452034 39452165 -82391691 - RSINE1 SINE B4 -17 148 9 7 885 612 27 0 0 chr11 39452361 39452435 -82391421 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 886 408 148 18 9 chr11 39453119 39453228 -82390628 + CT-rich Low_complexity Low_complexity 2 111 0 7 886 228 35 0 0 chr11 39453415 39453444 -82390412 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 7 886 423 0 0 0 chr11 39453777 39453824 -82390032 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 886 956 237 59 121 chr11 39454595 39454999 -82388857 + MTE2a LTR MaLR 1 379 0 7 886 294 79 31 16 chr11 39455022 39455086 -82388770 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 7 886 922 284 53 0 chr11 39455594 39455893 -82387963 + MER33 DNA MER1_type 1 315 -9 7 886 528 16 0 0 chr11 39455927 39455988 -82387868 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 886 252 239 109 0 chr11 39456375 39456467 -82387389 - MLT-int LTR MaLR -1074 661 560 7 886 584 291 167 30 chr11 39456674 39457010 -82386846 - MLT-int LTR MaLR -1280 455 74 7 886 261 57 0 0 chr11 39458162 39458197 -82385659 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 886 364 372 7 58 chr11 39458251 39458405 -82385451 - B4A SINE B4 -146 146 1 7 886 1476 209 22 84 chr11 39459117 39459473 -82384383 + ORR1B1 LTR MaLR 35 368 -26 7 886 332 315 116 26 chr11 39460498 39460687 -82383169 + MER34 LTR ERV1 27 232 -310 7 886 951 123 0 0 chr11 39461068 39461222 -82382634 + (GA)n Simple_repeat Simple_repeat 2 155 0 7 886 311 242 89 59 chr11 39461722 39461823 -82382033 - MER45A DNA Tip100 -14 164 61 7 886 352 229 9 9 chr11 39462421 39462531 -82381325 + (TA)n Simple_repeat Simple_repeat 2 111 0 7 886 191 325 32 8 chr11 39462906 39463030 -82380826 - L2a LINE L2 -74 3352 3226 7 886 243 0 0 0 chr11 39465316 39465343 -82378513 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 886 3060 82 9 5 chr11 39465849 39466268 -82377588 - L1Md_F2 LINE L1 -1 6581 6161 7 886 2459 72 12 0 chr11 39466269 39466603 -82377253 + L1_Mm LINE L1 4095 4432 -1451 7 886 387 0 0 0 chr11 39468183 39468226 -82375630 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 886 468 0 0 0 chr11 39468591 39468643 -82375213 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 886 819 292 93 70 chr11 39469118 39469343 -82374513 - MTD LTR MaLR -2 417 195 7 886 234 0 0 0 chr11 39469343 39469369 -82374487 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 886 819 292 93 70 chr11 39469369 39469529 -82374327 - MTD LTR MaLR -225 194 24 7 886 762 11 0 0 chr11 39469856 39469943 -82373913 + (GA)n Simple_repeat Simple_repeat 2 88 0 7 886 24 0 0 0 chr11 39472084 39472108 -82371748 + AT_rich Low_complexity Low_complexity 1 24 0 7 886 1268 51 6 0 chr11 39472244 39472421 -82371435 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 886 428 150 0 12 chr11 39472422 39472454 -82371402 + (CTA)n Simple_repeat Simple_repeat 2 33 0 7 886 960 85 0 0 chr11 39472454 39472607 -82371249 + (TTC)n Simple_repeat Simple_repeat 3 155 0 7 886 428 150 0 12 chr11 39472607 39472655 -82371201 + (CTA)n Simple_repeat Simple_repeat 2 49 0 7 886 305 306 37 13 chr11 39472671 39472934 -82370922 + L1M5 LINE L1 2786 3054 -3092 7 886 462 298 74 55 chr11 39473483 39473700 -82370156 + RMER2 LTR ERV1 346 566 -1 7 886 285 203 0 0 chr11 39473929 39473993 -82369863 + L1M2 LINE L1 5725 5788 -509 7 886 1483 259 194 18 chr11 39473993 39474197 -82369659 + RMER19A LTR ERVK 1 227 -510 7 886 1410 62 0 0 chr11 39474197 39474426 -82369430 + (CTTTG)n Simple_repeat Simple_repeat 1 229 0 7 886 1483 259 194 18 chr11 39474426 39474843 -82369013 + RMER19A LTR ERVK 228 735 -2 7 886 888 279 116 78 chr11 39475267 39475673 -82368183 + Lx9 LINE L1 7021 7469 -175 7 886 444 82 0 0 chr11 39475673 39475734 -82368122 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 886 888 279 116 78 chr11 39475734 39475894 -82367962 + Lx9 LINE L1 7470 7608 -36 7 886 284 204 120 46 chr11 39476332 39476440 -82367416 + MER57-int LTR ERV1 7161 7276 -261 7 886 222 118 0 0 chr11 39476735 39476769 -82367087 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 886 246 105 0 0 chr11 39477129 39477167 -82366689 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 886 468 0 0 0 chr11 39478503 39478555 -82365301 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 886 252 77 0 0 chr11 39480551 39480590 -82363266 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 7 886 1091 124 6 0 chr11 39480938 39481115 -82362741 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 7 886 2015 274 34 56 chr11 39481117 39481760 -82362096 - Lx6 LINE L1 -9 7451 6823 7 886 435 141 0 0 chr11 39482231 39482309 -82361547 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 886 297 0 0 0 chr11 39483035 39483068 -82360788 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 886 462 224 0 0 chr11 39483068 39483184 -82360672 + (TG)n Simple_repeat Simple_repeat 2 117 0 7 886 1013 301 91 25 chr11 39483930 39484294 -82359562 - MTB_Mm LTR MaLR -14 405 18 7 886 1666 291 86 68 chr11 39484304 39485082 -82358774 - MTB_Mm-int LTR MaLR -4 1254 463 7 886 646 304 115 84 chr11 39485121 39485538 -82358318 + RMER13A LTR ERVK 21 450 -410 7 886 491 70 0 53 chr11 39485639 39485714 -82358142 - MTB_Mm LTR MaLR 0 407 337 7 886 2010 144 9 3 chr11 39485698 39486025 -82357831 - MTB_Mm-int LTR MaLR -769 329 1 7 886 2759 106 15 15 chr11 39486028 39486431 -82357425 - MTB_Mm LTR MaLR -4 403 1 7 886 348 183 0 0 chr11 39486620 39486680 -82357176 - MTD-int LTR MaLR -800 458 399 7 886 423 289 102 12 chr11 39486724 39486967 -82356889 - MTD-int LTR MaLR -848 250 14 7 886 1337 259 77 16 chr11 39486971 39487347 -82356509 - MTD LTR MaLR -20 399 1 7 886 987 315 64 21 chr11 39487414 39488118 -82355738 - L1MA6 LINE L1 -2 6298 5565 7 886 395 331 29 59 chr11 39488315 39488485 -82355371 - RSINE1 SINE B4 0 165 1 7 886 263 298 24 102 chr11 39488767 39488894 -82354962 - PB1D10 SINE Alu 0 117 1 7 886 31 21 0 20 chr11 39489062 39489098 -82354758 + AT_rich Low_complexity Low_complexity 1 36 0 7 886 1984 68 0 0 chr11 39489098 39489350 -82354506 - L1_Mus1 LINE L1 0 6567 6316 7 886 31 21 0 20 chr11 39489350 39489362 -82354494 + AT_rich Low_complexity Low_complexity 1 12 0 7 886 33 73 0 0 chr11 39489635 39489703 -82354153 + AT_rich Low_complexity Low_complexity 1 68 0 7 886 1129 77 0 0 chr11 39490113 39490256 -82353600 + B1_Mus2 SINE Alu 1 143 -4 7 886 446 0 19 0 chr11 39490258 39490312 -82353544 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 7 886 263 19 35 69 chr11 39490618 39490676 -82353180 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 7 886 513 0 0 0 chr11 39491274 39491331 -82352525 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 886 270 288 27 0 chr11 39492114 39492187 -82351669 + MamRep605 Unknown Unknown 476 550 -326 7 886 2627 228 61 22 chr11 39492465 39493142 -82350714 + Lx7 LINE L1 6660 7362 -334 7 886 226 116 47 0 chr11 39493151 39493194 -82350662 + T-rich Low_complexity Low_complexity 2 46 0 7 886 821 234 13 155 chr11 39493202 39493385 -82350471 + Lx7 LINE L1 7360 7531 -165 7 886 2330 150 28 44 chr11 39493385 39493818 -82350038 + RLTR23 LTR ERV1 1 426 -4 7 886 821 234 13 155 chr11 39493818 39493900 -82349956 + Lx7 LINE L1 7532 7588 -108 7 886 649 182 263 6 chr11 39493900 39494071 -82349785 - B3 SINE B2 -1 215 1 7 886 821 234 13 155 chr11 39494071 39494090 -82349766 + Lx7 LINE L1 7589 7593 -103 7 886 954 67 0 0 chr11 39494090 39494225 -82349631 + (GA)n Simple_repeat Simple_repeat 2 136 0 7 886 821 234 13 155 chr11 39494225 39494312 -82349544 + Lx7 LINE L1 7594 7680 -16 7 886 203 204 0 53 chr11 39494316 39494373 -82349483 + (CAAAG)n Simple_repeat Simple_repeat 2 55 0 7 886 223 197 0 57 chr11 39496369 39496411 -82347445 + T-rich Low_complexity Low_complexity 29 69 0 7 886 1158 48 24 12 chr11 39496411 39496580 -82347276 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 7 886 223 197 0 57 chr11 39496580 39496607 -82347249 + T-rich Low_complexity Low_complexity 4 28 0 7 886 1175 151 70 5 chr11 39496614 39496725 -82347131 - Lx LINE L1 -9 6645 6521 7 886 231 36 0 0 chr11 39496725 39496753 -82347103 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 7 886 1175 151 70 5 chr11 39496753 39496854 -82347002 - Lx LINE L1 -134 6520 6420 7 886 387 0 0 0 chr11 39497012 39497055 -82346801 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 886 543 308 91 34 chr11 39497055 39497230 -82346626 - B3 SINE B2 -31 185 1 7 886 336 220 106 6 chr11 39497813 39497923 -82345933 + Lx6 LINE L1 7304 7406 -54 7 886 204 132 0 26 chr11 39497924 39497963 -82345893 + (TAGTG)n Simple_repeat Simple_repeat 4 41 0 7 886 23 0 0 0 chr11 39497976 39497999 -82345857 + AT_rich Low_complexity Low_complexity 1 23 0 7 886 322 335 46 46 chr11 39498325 39498522 -82345334 + L2 LINE L2 2449 2645 -774 7 886 561 320 42 31 chr11 39498534 39498821 -82345035 + L1MC LINE L1 5317 5606 -2276 7 886 22 56 0 0 chr11 39498903 39498939 -82344917 + AT_rich Low_complexity Low_complexity 1 36 0 7 886 501 208 99 0 chr11 39499326 39499427 -82344429 - PB1D9 SINE Alu -7 113 3 7 886 1115 68 0 0 chr11 39499477 39499624 -82344232 + B2_Mm2 SINE B2 2 148 -47 7 886 195 42 0 0 chr11 39499629 39499653 -82344203 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 886 455 289 149 30 chr11 39500145 39500212 -82343644 + MER2 DNA MER2_type 83 155 -190 1 886 429 97 0 0 chr11 39500212 39500284 -82343572 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 886 455 289 149 30 chr11 39500284 39500451 -82343405 + MER2 DNA MER2_type 156 345 0 1 886 273 282 66 33 chr11 39500451 39500572 -82343284 + L2b LINE L2 2938 3062 -313 3 886 279 79 0 0 chr11 39500921 39500959 -82342897 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 886 374 340 0 30 chr11 39500992 39501092 -82342764 - B4A SINE B4 -4 288 192 5 886 242 306 16 0 chr11 39501105 39501167 -82342689 - B1F2 SINE Alu -86 63 1 6 886 26 0 0 0 chr11 39501628 39501654 -82342202 + AT_rich Low_complexity Low_complexity 1 26 0 7 886 611 272 12 163 chr11 39502309 39502647 -82341209 - B4A SINE B4 -3 289 3 8 886 298 158 0 0 chr11 39502701 39502771 -82341085 + Lx2 LINE L1 6937 7006 -2 9 886 22 0 0 0 chr11 39502981 39503003 -82340853 + AT_rich Low_complexity Low_complexity 1 22 0 1 886 26 101 0 0 chr11 39503198 39503287 -82340569 + AT_rich Low_complexity Low_complexity 1 89 0 1 886 351 0 0 0 chr11 39503322 39503361 -82340495 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 886 709 270 14 24 chr11 39503362 39503571 -82340285 - B3 SINE B2 -9 207 1 1 886 1073 73 0 0 chr11 39503742 39503878 -82339978 + B1_Mus1 SINE Alu 1 136 -12 1 886 186 43 0 0 chr11 39503878 39503901 -82339955 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 886 843 313 105 26 chr11 39504259 39504308 -82339548 - MLT1B LTR MaLR -11 379 314 1 886 623 136 9 0 chr11 39504308 39504418 -82339438 - Lx LINE L1 -5 6649 6539 1 886 843 313 105 26 chr11 39504418 39504719 -82339137 - MLT1B LTR MaLR -77 313 2 1 886 1274 90 11 5 chr11 39505502 39505712 -82338144 - L1Md_F2 LINE L1 0 6582 6373 1 886 930 180 12 12 chr11 39505792 39505961 -82337895 + B2_Mm2 SINE B2 2 170 -25 1 886 537 131 50 10 chr11 39506738 39506838 -82337018 + L1_Mur2 LINE L1 4374 4477 -1400 2 886 7458 105 11 5 chr11 39506810 39508356 -82335500 + L1_Mus3 LINE L1 5108 6638 0 2 886 1109 90 0 0 chr11 39508461 39508605 -82335251 + B1_Mus1 SINE Alu 5 148 0 2 886 279 54 0 0 chr11 39508605 39508642 -82335214 + (A)n Simple_repeat Simple_repeat 1 37 0 2 886 29 47 0 0 chr11 39510342 39510385 -82333471 + AT_rich Low_complexity Low_complexity 1 43 0 2 886 210 37 0 0 chr11 39510495 39510522 -82333334 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 886 357 250 0 14 chr11 39510927 39511000 -82332856 + B4A SINE B4 2 73 -219 2 886 232 292 9 70 chr11 39510931 39511045 -82332811 + BC1_Mm scRNA scRNA 6 112 -40 2 886 1153 305 101 20 chr11 39512652 39512862 -82330994 - L1MA6 LINE L1 -34 6266 6061 2 886 2102 86 52 15 chr11 39512862 39513191 -82330665 - L1_Mus4 LINE L1 0 6636 6296 2 886 1153 307 103 22 chr11 39513191 39513721 -82330135 - L1MA6 LINE L1 -240 6060 5455 2 886 21 71 0 0 chr11 39514140 39514182 -82329674 + AT_rich Low_complexity Low_complexity 1 42 0 3 886 920 315 32 22 chr11 39514356 39514671 -82329185 + MTD LTR MaLR 33 350 -69 3 886 8553 2 0 0 chr11 39514671 39515625 -82328231 + L1Md_A LINE L1 4633 5586 -297 3 886 9005 3 0 0 chr11 39515625 39516621 -82327235 + L1Md_A LINE L1 5587 6582 0 3 886 332 278 46 9 chr11 39516634 39516743 -82327113 + MTD LTR MaLR 307 419 0 3 886 1095 186 5 0 chr11 39516848 39517036 -82326820 + Lx5 LINE L1 6687 6875 -175 3 886 6377 67 5 1 chr11 39517047 39517870 -82325986 - L1_Mus2 LINE L1 0 6566 5741 3 886 4548 92 2 5 chr11 39517870 39518502 -82325354 + L1_Mus2 LINE L1 5146 5775 -108 3 886 655 194 168 6 chr11 39518484 39518645 -82325211 + Lx5 LINE L1 6861 7047 -3 3 886 327 25 0 0 chr11 39518650 39518690 -82325166 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 3 886 251 28 28 0 chr11 39518736 39518772 -82325084 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 3 886 840 271 164 43 chr11 39519932 39520303 -82323553 - MTD LTR MaLR 0 419 4 3 886 387 0 0 0 chr11 39520407 39520450 -82323406 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 886 195 139 0 0 chr11 39520833 39520869 -82322987 + (T)n Simple_repeat Simple_repeat 1 36 0 3 886 252 100 0 0 chr11 39521699 39521739 -82322117 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 886 395 19 19 0 chr11 39521772 39521824 -82322032 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 886 336 18 17 51 chr11 39521962 39522021 -82321835 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 4 886 417 39 0 0 chr11 39522809 39522860 -82320996 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 886 474 270 2 129 chr11 39523327 39523492 -82320364 + B1_Mur4 SINE Alu 2 150 0 4 886 1398 71 0 5 chr11 39523820 39524004 -82319852 - L1_Mus3 LINE L1 -261 6377 6195 4 886 768 80 14 48 chr11 39524004 39524149 -82319707 + L1_Mus3 LINE L1 6494 6633 -5 4 886 534 31 0 0 chr11 39525353 39525417 -82318439 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 886 2637 180 122 7 chr11 39525673 39526271 -82317585 + RMER6C LTR ERVK 24 690 0 4 886 676 139 187 15 chr11 39526271 39526430 -82317426 + ORR1B1 LTR MaLR 170 367 0 4 886 1179 89 10 21 chr11 39526992 39527186 -82316670 - L1_Mus3 LINE L1 -2 6636 6445 4 886 200 329 60 12 chr11 39528133 39528216 -82315640 + MIRc SINE MIR 82 168 -100 5 886 198 118 0 0 chr11 39528614 39528648 -82315208 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 886 1280 150 94 11 chr11 39528897 39529018 -82314838 + Lx9 LINE L1 7344 7485 -159 5 886 1431 69 11 5 chr11 39529018 39529208 -82314648 + B2_Mm2 SINE B2 2 192 -3 5 886 1280 150 94 11 chr11 39529208 39529363 -82314493 + Lx9 LINE L1 7486 7643 -1 5 886 447 122 22 11 chr11 39529895 39529986 -82313870 + GA-rich Low_complexity Low_complexity 2 93 0 5 886 818 342 54 44 chr11 39530244 39530319 -82313537 + MT2A LTR ERVL 9 79 -454 5 886 1798 174 16 3 chr11 39530319 39530624 -82313232 + RLTR27 LTR ERVK 1 309 0 5 886 818 342 54 44 chr11 39530624 39531068 -82312788 + MT2A LTR ERVL 80 533 0 5 886 260 185 31 0 chr11 39531129 39531194 -82312662 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 886 575 160 13 20 chr11 39531984 39532137 -82311719 + (TAGA)n Simple_repeat Simple_repeat 2 153 0 5 886 327 104 0 0 chr11 39534172 39534220 -82309636 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 886 4715 102 49 4 chr11 39534446 39535145 -82308711 - Lx2 LINE L1 0 6997 6268 6 886 217 0 61 0 chr11 39535478 39535511 -82308345 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 6 886 242 239 63 74 chr11 39536411 39536506 -82307350 - MIRb SINE MIR -20 248 151 6 886 1669 165 48 42 chr11 39538344 39538679 -82305177 + MTC LTR MaLR 14 350 -71 6 886 1779 127 90 0 chr11 39539015 39539315 -82304541 - IAPEY3_LTR LTR ERVK -5 327 1 6 886 252 165 11 56 chr11 39539629 39539719 -82304137 + T-rich Low_complexity Low_complexity 1 86 0 6 886 302 75 38 0 chr11 39539923 39539976 -82303880 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 886 24 0 0 0 chr11 39540652 39540676 -82303180 + AT_rich Low_complexity Low_complexity 1 24 0 6 886 1845 53 28 8 chr11 39540678 39540925 -82302931 - L1_Mus2 LINE L1 -1 6565 6314 6 886 191 322 147 27 chr11 39542199 39542349 -82301507 - MIRb SINE MIR -34 234 67 6 886 1062 84 0 14 chr11 39543471 39543605 -82300251 + B1_Mm SINE Alu 1 134 -13 7 886 303 28 0 0 chr11 39543605 39543641 -82300215 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 886 264 263 187 41 chr11 39543817 39543940 -82299916 - B1_Mur1 SINE Alu -6 143 3 7 886 364 346 12 64 chr11 39544146 39544396 -82299460 - L1MC5 LINE L1 -722 7239 7003 7 886 382 301 42 12 chr11 39544526 39544694 -82299162 - L1MC5 LINE L1 -1087 6874 6702 7 886 238 252 89 32 chr11 39545669 39545792 -82298064 + L1MEg LINE L1 1218 1347 -4737 7 886 215 338 35 38 chr11 39545869 39546005 -82297851 + B4A SINE B4 6 148 -144 7 886 1073 128 0 6 chr11 39546109 39546290 -82297566 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 886 23 33 0 0 chr11 39546349 39546379 -82297477 + AT_rich Low_complexity Low_complexity 1 30 0 7 886 270 0 0 0 chr11 39548272 39548302 -82295554 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 886 340 315 99 68 chr11 39548366 39548557 -82295299 + B3A SINE B2 2 198 0 7 886 249 235 14 14 chr11 39549337 39549406 -82294450 + GA-rich Low_complexity Low_complexity 4 72 0 8 886 696 102 246 0 chr11 39549582 39549700 -82294156 + B1_Mus1 SINE Alu 2 148 0 8 886 308 288 66 25 chr11 39550777 39550898 -82292958 + RSINE1 SINE B4 6 131 -34 8 886 347 73 0 18 chr11 39550900 39550956 -82292900 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 886 436 383 85 43 chr11 39551030 39551428 -82292428 - ORR1E-int LTR MaLR -339 1241 827 8 886 3173 104 31 0 chr11 39551570 39552014 -82291842 + L1_Mus3 LINE L1 6056 6513 -125 8 886 940 320 80 47 chr11 39552039 39552491 -82291365 - ORR1E-int LTR MaLR -1112 468 2 8 886 321 385 70 73 chr11 39552491 39552849 -82291007 - ORR1E LTR MaLR -2 357 1 8 886 390 176 0 0 chr11 39552894 39552979 -82290877 + (CA)n Simple_repeat Simple_repeat 2 86 0 8 886 431 331 36 12 chr11 39553341 39553509 -82290347 + MER5A DNA MER1_type 18 189 0 8 886 641 283 93 11 chr11 39553822 39554004 -82289852 - ID_B1 SINE B4 -24 200 4 8 886 253 318 7 90 chr11 39554027 39554172 -82289684 + MIRb SINE MIR 93 225 -43 8 886 333 0 0 0 chr11 39556603 39556640 -82287216 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 886 282 334 36 39 chr11 39556721 39556923 -82286933 + MLT1G1 LTR MaLR 44 207 -372 9 886 218 218 0 18 chr11 39558158 39558180 -82285676 + (TA)n Simple_repeat Simple_repeat 1 22 0 9 886 808 289 37 112 chr11 39558180 39558523 -82285333 + MTE2a LTR MaLR 1 314 -65 9 886 504 0 0 0 chr11 39558523 39558579 -82285277 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 886 808 289 37 112 chr11 39558579 39558645 -82285211 + MTE2a LTR MaLR 315 379 0 9 886 218 218 0 18 chr11 39558645 39558678 -82285178 + (TA)n Simple_repeat Simple_repeat 1 32 0 9 886 1297 244 13 10 chr11 39558702 39559012 -82284844 - Lx6 LINE L1 -1 7459 7149 9 886 675 275 16 27 chr11 39559004 39559187 -82284669 + Lx6 LINE L1 6556 6736 -724 9 886 276 200 119 47 chr11 39559220 39559351 -82284505 - MIR SINE MIR -25 243 91 9 886 340 333 42 87 chr11 39562005 39562314 -82281542 + L1MC5 LINE L1 5527 5821 -2061 9 886 249 33 0 0 chr11 39562318 39562348 -82281508 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 886 438 20 0 0 chr11 39562348 39562398 -82281458 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 886 427 290 15 81 chr11 39562616 39562875 -82280981 + L1MC5 LINE L1 6718 6959 -1002 9 886 2767 66 3 14 chr11 39564700 39565071 -82278785 - L1_Mus1 LINE L1 -1 6566 6200 1 886 595 92 0 18 chr11 39565262 39565373 -82278483 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 886 198 71 0 0 chr11 39565373 39565401 -82278455 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 886 324 143 0 0 chr11 39566517 39566573 -82277283 + (T)n Simple_repeat Simple_repeat 1 56 0 1 886 1374 205 13 46 chr11 39566573 39566875 -82276981 + MTC-int LTR MaLR 313 604 -654 1 886 1775 244 22 20 chr11 39570693 39571099 -82272757 - MTB_Mm LTR MaLR 0 407 1 1 886 22 0 0 0 chr11 39572677 39572699 -82271157 + AT_rich Low_complexity Low_complexity 1 22 0 1 886 23 0 0 0 chr11 39574528 39574551 -82269305 + AT_rich Low_complexity Low_complexity 1 23 0 1 886 342 0 0 0 chr11 39575121 39575159 -82268697 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 886 485 367 56 0 chr11 39575159 39575332 -82268524 - B3 SINE B2 -31 185 3 1 886 324 0 0 0 chr11 39575540 39575576 -82268280 + (T)n Simple_repeat Simple_repeat 1 36 0 1 886 237 65 0 0 chr11 39576820 39576851 -82267005 + (A)n Simple_repeat Simple_repeat 1 31 0 1 886 387 0 0 0 chr11 39576913 39576956 -82266900 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 886 202 125 41 20 chr11 39577670 39577704 -82266152 + T-rich Low_complexity Low_complexity 18 53 0 1 886 1135 64 0 0 chr11 39577704 39577845 -82266011 - B1_Mus2 SINE Alu -6 141 1 1 886 202 125 41 20 chr11 39577845 39577859 -82265997 + T-rich Low_complexity Low_complexity 4 17 0 1 886 978 128 0 7 chr11 39579103 39579253 -82264603 + Lx2 LINE L1 6735 6883 -114 1 886 471 260 0 0 chr11 39579280 39579457 -82264399 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 886 406 292 98 16 chr11 39579732 39579854 -82264002 + RSINE1 SINE B4 17 148 -17 1 886 219 69 0 0 chr11 39579862 39579891 -82263965 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 886 261 0 0 0 chr11 39579910 39579939 -82263917 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 886 244 359 71 106 chr11 39580720 39581156 -82262700 - MLT1K LTR MaLR -130 465 45 1 886 261 0 0 0 chr11 39581338 39581367 -82262489 + (A)n Simple_repeat Simple_repeat 1 29 0 1 886 200 79 0 50 chr11 39582085 39582125 -82261731 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 886 495 0 0 0 chr11 39582539 39582594 -82261262 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 886 312 27 0 0 chr11 39582594 39582630 -82261226 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 886 401 295 56 24 chr11 39583413 39583538 -82260318 + ID_B1 SINE B4 96 224 0 1 887 326 23 23 0 chr11 39584077 39584120 -82259736 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 887 225 0 0 0 chr11 39584120 39584144 -82259712 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 887 203 268 11 79 chr11 39584368 39584457 -82259399 - MIRc SINE MIR -104 164 82 1 887 284 318 98 0 chr11 39585038 39585170 -82258686 - MIRc SINE MIR -31 237 93 1 887 242 315 76 15 chr11 39585211 39585343 -82258513 - MER104 DNA Tc2 -2 179 40 1 887 250 182 59 29 chr11 39585587 39585689 -82258167 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 887 387 125 0 0 chr11 39585693 39585765 -82258091 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 887 328 351 8 0 chr11 39586346 39586477 -82257379 + L2a LINE L2 3271 3402 -24 1 887 358 327 66 26 chr11 39589822 39589973 -82253883 + RSINE1 SINE B4 1 157 -8 1 887 985 106 0 11 chr11 39589990 39590172 -82253684 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 887 258 116 0 0 chr11 39590172 39590214 -82253642 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 887 951 283 112 37 chr11 39590432 39591004 -82252852 - Lx7 LINE L1 -5 7691 7077 1 887 432 0 0 0 chr11 39592507 39592555 -82251301 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 887 347 349 45 22 chr11 39593233 39593412 -82250444 - MLT1A0 LTR MaLR -28 337 155 1 887 432 0 0 0 chr11 39593547 39593595 -82250261 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 887 252 0 0 0 chr11 39593613 39593641 -82250215 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 887 482 312 56 49 chr11 39594565 39594851 -82249005 + B4A SINE B4 5 292 0 1 887 423 0 0 0 chr11 39596100 39596147 -82247709 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 887 459 0 0 0 chr11 39596147 39596197 -82247659 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 887 1576 22 0 0 chr11 39598558 39598739 -82245117 - L1Md_T LINE L1 -257 6325 6145 1 887 1028 69 0 0 chr11 39598739 39598884 -82244972 + L1Md_T LINE L1 6438 6582 0 1 887 603 322 39 88 chr11 39599914 39600197 -82243659 + B4 SINE B4 1 269 -23 1 887 213 154 0 0 chr11 39600232 39600271 -82243585 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 887 264 364 30 23 chr11 39600557 39600689 -82243167 - ID_B1 SINE B4 -11 213 81 1 887 590 297 66 20 chr11 39600717 39601067 -82242789 - L1MC3 LINE L1 -9 7776 7411 1 887 21 0 0 0 chr11 39601082 39601103 -82242753 + AT_rich Low_complexity Low_complexity 1 21 0 1 887 35 0 0 0 chr11 39602093 39602128 -82241728 + AT_rich Low_complexity Low_complexity 1 35 0 1 887 361 116 29 0 chr11 39606500 39606569 -82237287 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 887 29 0 0 0 chr11 39606873 39606902 -82236954 + AT_rich Low_complexity Low_complexity 1 29 0 1 887 504 0 0 0 chr11 39607860 39607916 -82235940 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 887 242 387 48 8 chr11 39609122 39609247 -82234609 - MLT1J LTR MaLR -208 304 175 1 887 228 282 40 144 chr11 39612126 39612169 -82231687 + LTR48 LTR ERV1 2 102 -685 1 887 250 324 45 45 chr11 39612169 39612279 -82231577 + ORR1E LTR MaLR 80 189 -170 1 887 228 282 40 144 chr11 39612279 39612300 -82231556 + LTR48 LTR ERV1 103 157 -630 1 887 763 167 0 33 chr11 39612306 39612678 -82231178 + (TG)n Simple_repeat Simple_repeat 1 359 0 1 887 258 105 0 0 chr11 39614695 39614733 -82229123 + (T)n Simple_repeat Simple_repeat 1 38 0 1 887 989 144 42 84 chr11 39614733 39614789 -82229067 - RMER17C LTR ERVK -135 275 216 1 887 690 13 0 0 chr11 39614789 39614868 -82228988 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 887 989 144 42 84 chr11 39614868 39615098 -82228758 - RMER17C LTR ERVK -195 215 2 1 887 676 218 15 0 chr11 39615098 39615231 -82228625 + Lx7 LINE L1 6857 6991 -705 1 887 246 310 0 14 chr11 39615550 39615622 -82228234 + GA-rich Low_complexity Low_complexity 1 71 0 1 887 23 68 0 0 chr11 39616032 39616076 -82227780 + AT_rich Low_complexity Low_complexity 1 44 0 1 887 594 28 0 0 chr11 39616199 39616271 -82227585 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 887 313 355 90 45 chr11 39616737 39617226 -82226630 - Lx8 LINE L1 -9 7464 6954 1 887 918 301 44 32 chr11 39617223 39617634 -82226222 + L1_Rod LINE L1 5332 5747 -100 1 887 287 262 3 11 chr11 39617625 39617716 -82226140 + L1_Rod LINE L1 5635 5781 -522 1 887 246 62 0 0 chr11 39617716 39617748 -82226108 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 887 284 289 121 16 chr11 39617748 39617856 -82226000 + L1_Rod LINE L1 5730 5843 -4 1 887 15691 51 6 1 chr11 39618099 39620800 -82223056 - L1Md_F2 LINE L1 0 6582 3864 1 887 19920 164 55 25 chr11 39620914 39621929 -82221927 + L1_Mus3 LINE L1 426 1471 -4412 1 887 2542 103 53 18 chr11 39621929 39622324 -82221532 + RLTR9E LTR ERVK 1 409 0 1 887 19920 137 19 5 chr11 39622324 39625010 -82218846 + L1_Mus3 LINE L1 1472 4195 -1688 1 887 396 0 0 0 chr11 39625010 39625054 -82218802 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 887 19920 137 19 5 chr11 39625054 39625486 -82218370 + L1_Mus3 LINE L1 4196 4637 -1246 1 887 6870 104 10 53 chr11 39625482 39626685 -82217171 + L1_Mus3 LINE L1 5485 6633 -5 1 887 318 290 71 72 chr11 39626767 39627143 -82216713 + Lx8 LINE L1 5796 6166 -1307 1 887 563 0 15 0 chr11 39627176 39627243 -82216613 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 887 874 129 14 0 chr11 39627291 39627430 -82216426 + B1_Mus1 SINE Alu 2 142 -6 1 887 249 108 0 0 chr11 39627497 39627534 -82216322 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 887 395 119 0 15 chr11 39627589 39627657 -82216199 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 887 1545 297 43 60 chr11 39627691 39628405 -82215451 + Lx8 LINE L1 6255 6956 -517 1 887 564 15 0 0 chr11 39629104 39629169 -82214687 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 887 21 36 0 0 chr11 39629334 39629362 -82214494 + AT_rich Low_complexity Low_complexity 1 28 0 1 887 300 322 67 17 chr11 39629366 39629486 -82214370 - RSINE1 SINE B4 -38 127 2 1 887 4118 61 2 53 chr11 39629741 39630327 -82213529 - L1Md_F2 LINE L1 0 6582 6027 1 887 235 336 35 35 chr11 39630819 39630871 -82212985 + MER34 LTR ERV1 100 194 -348 1 887 248 266 0 59 chr11 39630871 39630939 -82212917 + B4A SINE B4 81 144 -148 1 887 655 191 29 29 chr11 39630888 39631028 -82212828 + B1_Mur4 SINE Alu 10 149 -1 1 887 235 336 35 35 chr11 39630939 39630964 -82212892 + MER34 LTR ERV1 195 244 -298 1 887 6378 39 0 0 chr11 39631491 39632254 -82211602 - L1Md_T LINE L1 0 6582 5820 1 887 449 62 15 0 chr11 39632418 39632483 -82211373 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 1 887 539 29 14 0 chr11 39632820 39632889 -82210967 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1 887 561 361 75 43 chr11 39632975 39633067 -82210789 - B4A SINE B4 -2 290 205 1 887 4679 59 0 8 chr11 39633067 39633668 -82210188 - L1Md_F2 LINE L1 0 6582 5987 1 887 561 361 75 43 chr11 39633668 39633856 -82210000 - B4A SINE B4 -88 204 1 1 887 352 306 189 41 chr11 39633857 39634270 -82209586 - L1MC LINE L1 -2639 3507 3034 1 887 296 296 16 0 chr11 39634295 39634420 -82209436 - L1MEc LINE L1 -3175 3144 3018 1 887 261 365 29 9 chr11 39634551 39634656 -82209200 + PB1D7 SINE Alu 14 120 0 1 887 423 374 27 54 chr11 39634831 39634978 -82208878 - RSINE1 SINE B4 -19 146 4 1 887 340 360 113 41 chr11 39635169 39635396 -82208460 - L1MEc LINE L1 -5897 503 275 1 887 369 0 0 0 chr11 39635396 39635437 -82208419 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 887 340 360 113 41 chr11 39635437 39635652 -82208204 - L1MEc LINE L1 -6126 274 29 1 887 958 85 0 0 chr11 39635700 39635830 -82208026 + B1_Mus1 SINE Alu 1 130 -18 1 887 234 0 0 0 chr11 39635844 39635870 -82207986 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 887 7254 32 21 23 chr11 39636318 39637267 -82206589 - L1Md_F3 LINE L1 0 6584 5631 2 887 1005 330 31 17 chr11 39637374 39637734 -82206122 + MTE2a LTR MaLR 15 379 0 2 887 204 158 0 0 chr11 39638525 39638563 -82205293 + GA-rich Low_complexity Low_complexity 2 39 0 2 887 555 16 0 0 chr11 39639029 39639093 -82204763 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 887 740 231 120 53 chr11 39639269 39639727 -82204129 - Lx7 LINE L1 -4 7692 7078 2 887 216 0 0 0 chr11 39639745 39639769 -82204087 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2 887 1041 76 0 0 chr11 39639769 39639901 -82203955 - B1_Mus2 SINE Alu -13 134 3 2 887 237 237 0 0 chr11 39640041 39640100 -82203756 + (CATA)n Simple_repeat Simple_repeat 1 59 0 2 887 21 0 0 0 chr11 39640966 39640987 -82202869 + AT_rich Low_complexity Low_complexity 1 21 0 2 887 2200 230 48 12 chr11 39642534 39643188 -82200668 + Lx6 LINE L1 5404 6093 -1367 2 887 801 110 0 0 chr11 39643188 39643333 -82200523 + (GA)n Simple_repeat Simple_repeat 2 146 0 2 887 2200 244 65 23 chr11 39643333 39643513 -82200343 + Lx6 LINE L1 6094 6272 -1188 2 887 901 304 30 22 chr11 39643511 39643881 -82199975 + Lx6 LINE L1 7057 7429 -31 2 887 24 0 0 0 chr11 39643882 39643906 -82199950 + AT_rich Low_complexity Low_complexity 1 24 0 2 887 686 273 14 0 chr11 39644157 39644300 -82199556 + U1 snRNA snRNA 1 145 -20 2 887 21 57 0 0 chr11 39644301 39644336 -82199520 + AT_rich Low_complexity Low_complexity 1 35 0 2 887 333 104 0 20 chr11 39644358 39644407 -82199449 - HAL1-3A_ME LINE L1 -833 2025 1978 2 887 258 325 39 55 chr11 39645466 39645487 -82198369 - B1F1 SINE Alu -24 125 107 2 887 198 0 0 0 chr11 39645487 39645509 -82198347 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 887 258 325 39 55 chr11 39645509 39645614 -82198242 - B1F1 SINE Alu -43 106 1 2 887 241 286 21 21 chr11 39646445 39646538 -82197318 + MLT1A1 LTR MaLR 314 406 -2 2 887 209 299 119 18 chr11 39646643 39646752 -82197104 - L3 LINE CR1 -2691 1798 1679 2 887 407 265 5 17 chr11 39646763 39646880 -82196976 + B1F1 SINE Alu 15 126 -21 2 887 206 178 0 22 chr11 39647409 39647455 -82196401 + A-rich Low_complexity Low_complexity 1 45 0 2 887 351 78 0 0 chr11 39647755 39647806 -82196050 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 887 379 302 19 0 chr11 39647812 39647918 -82195938 - RSINE1 SINE B4 -47 118 11 2 887 1309 266 70 19 chr11 39648482 39648853 -82195003 - Lx6 LINE L1 -27 7433 7044 2 887 1432 195 45 17 chr11 39648902 39649189 -82194667 + ORR1D1 LTR MaLR 1 295 -79 2 887 387 340 73 4 chr11 39649590 39649835 -82194021 + L1MD LINE L1 2132 2393 -3753 2 887 324 365 43 0 chr11 39650147 39650262 -82193594 - Lx8 LINE L1 -202 7271 7152 2 887 238 290 29 0 chr11 39650341 39650410 -82193446 - RMER5 LTR ERV1 -431 103 33 2 887 429 310 83 14 chr11 39650844 39650988 -82192868 - B3A SINE B2 -39 159 6 2 887 2089 111 3 16 chr11 39651000 39651319 -82192537 - Lx2 LINE L1 0 6997 6683 2 887 550 95 0 0 chr11 39651319 39651393 -82192463 + Lx LINE L1 6287 6360 -294 2 887 511 305 13 60 chr11 39651983 39652133 -82191723 + RSINE1 SINE B4 2 144 -21 2 887 1498 230 34 0 chr11 39652853 39653175 -82190681 + Lx9 LINE L1 7132 7464 -180 2 887 261 0 0 0 chr11 39653180 39653209 -82190647 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 887 2842 160 66 48 chr11 39653241 39653785 -82190071 + Lx4A LINE L1 6503 7056 -2 2 887 334 211 28 0 chr11 39653793 39653902 -82189954 + Lx9 LINE L1 7532 7643 -1 2 887 1234 272 38 41 chr11 39654845 39655213 -82188643 - ORR1D1 LTR MaLR -5 369 3 2 887 982 190 46 14 chr11 39655216 39655435 -82188421 + URR1A DNA MER1_type 1 226 0 2 887 350 352 156 15 chr11 39655443 39655642 -82188214 - B4A SINE B4 -64 228 2 2 887 1166 235 135 38 chr11 39655865 39656206 -82187650 - ORR1D1 LTR MaLR 0 374 1 2 887 21 0 0 0 chr11 39656457 39656478 -82187378 + AT_rich Low_complexity Low_complexity 1 21 0 2 887 23 0 0 0 chr11 39656571 39656594 -82187262 + AT_rich Low_complexity Low_complexity 1 23 0 2 887 2895 246 26 21 chr11 39656594 39657220 -82186636 - Lx5 LINE L1 -42 7008 6380 2 887 1554 247 52 58 chr11 39657245 39657727 -82186129 + RMER19C LTR ERVK 130 608 -3 2 887 1170 130 5 11 chr11 39657727 39657914 -82185942 + B2_Mm2 SINE B2 2 187 -8 2 887 369 0 0 0 chr11 39657924 39657965 -82185891 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 887 1576 239 89 13 chr11 39657981 39658442 -82185414 - Lx5 LINE L1 -663 6387 5892 2 887 372 171 100 14 chr11 39659081 39659176 -82184680 - B1_Mur4 SINE Alu -7 143 10 2 887 566 298 42 30 chr11 39659625 39659791 -82184065 - B3A SINE B2 -30 168 1 2 887 634 69 0 0 chr11 39660231 39660318 -82183538 + L1_Mus2 LINE L1 6479 6565 -1 2 887 3418 57 5 5 chr11 39660335 39660777 -82183079 + L1Md_F2 LINE L1 6139 6580 -2 2 887 414 0 0 0 chr11 39660958 39661004 -82182852 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 887 318 240 31 5 chr11 39661065 39661178 -82182678 + L1ME2 LINE L1 3702 3821 -2325 2 887 470 289 48 19 chr11 39661196 39661404 -82182452 + L1ME2 LINE L1 4059 4272 -1874 2 887 236 205 192 0 chr11 39661406 39661484 -82182372 - L1M4 LINE L1 -2103 4043 3951 2 887 257 0 30 0 chr11 39661486 39661519 -82182337 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2 887 342 283 59 19 chr11 39661893 39662076 -82181780 + L1ME2 LINE L1 5101 5280 -866 2 887 270 125 0 0 chr11 39662076 39662124 -82181732 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 887 966 308 100 48 chr11 39662124 39662958 -82180898 + L1ME2 LINE L1 5281 6163 -16 2 887 278 327 52 52 chr11 39663974 39664090 -82179766 - LTR84b LTR ERVL -18 743 628 2 887 21 57 0 0 chr11 39664372 39664407 -82179449 + AT_rich Low_complexity Low_complexity 1 35 0 2 887 234 23 45 23 chr11 39664537 39664581 -82179275 + (CAA)n Simple_repeat Simple_repeat 2 46 0 2 887 225 191 21 0 chr11 39664886 39664933 -82178923 + CT-rich Low_complexity Low_complexity 6 53 0 2 887 312 27 0 0 chr11 39664934 39664971 -82178885 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 887 247 316 26 117 chr11 39664976 39665130 -82178726 - B2_Mm2 SINE B2 -54 141 2 2 887 254 344 21 0 chr11 39665524 39665620 -82178236 - MLT1A0 LTR MaLR -19 355 258 2 887 300 322 25 25 chr11 39665755 39665873 -82177983 - MLT1A0 LTR MaLR -225 140 23 2 887 1033 118 59 6 chr11 39667743 39667913 -82175943 - B2_Mm2 SINE B2 0 195 17 2 887 616 332 51 26 chr11 39668446 39668641 -82175215 + B4 SINE B4 2 201 -91 2 887 2554 173 105 68 chr11 39668705 39669370 -82174486 - RMER6C LTR ERVK 0 690 1 2 887 29032 136 25 37 chr11 39670881 39673372 -82170484 + L1_Mus2 LINE L1 316 2873 -3010 2 887 525 32 0 0 chr11 39673372 39673435 -82170421 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 887 29032 107 15 12 chr11 39673435 39677154 -82166702 + L1_Mus2 LINE L1 2874 6654 0 2 887 249 356 87 25 chr11 39677961 39678157 -82165699 + Lx8 LINE L1 6195 6402 -1071 2 887 235 143 57 75 chr11 39678157 39678210 -82165646 + MT2B LTR ERVL 274 325 -276 2 887 459 324 7 0 chr11 39678550 39678686 -82165170 - B1_Mur2 SINE Alu -8 141 5 2 887 4117 90 12 7 chr11 39679266 39679848 -82164008 - L1_Mus1 LINE L1 0 6567 5983 2 887 1064 159 84 11 chr11 39679848 39680039 -82163817 - URR1A DNA MER1_type -7 219 15 2 887 468 136 0 0 chr11 39680114 39680202 -82163654 + (TC)n Simple_repeat Simple_repeat 2 89 0 2 887 459 0 0 0 chr11 39680207 39680258 -82163598 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 887 403 305 0 0 chr11 39680284 39680379 -82163477 - RSINE1 SINE B4 -60 105 11 2 887 854 90 8 24 chr11 39680798 39680923 -82162933 + B1_Mus1 SINE Alu 26 148 0 2 887 558 0 0 0 chr11 39680939 39681001 -82162855 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 2 887 451 346 77 29 chr11 39681177 39681489 -82162367 - MLT1A0 LTR MaLR -28 337 11 2 887 252 336 133 74 chr11 39681860 39682130 -82161726 - L2 LINE L2 -397 3022 2737 2 887 270 0 0 0 chr11 39682559 39682589 -82161267 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 887 3641 142 29 2 chr11 39684003 39684616 -82159240 - L1_Mus3 LINE L1 -737 5146 4517 2 887 6863 113 31 5 chr11 39684615 39686010 -82157846 + L1_Mus3 LINE L1 5207 6636 -2 2 887 22 0 0 0 chr11 39686468 39686490 -82157366 + AT_rich Low_complexity Low_complexity 1 22 0 2 887 369 123 0 0 chr11 39687291 39687356 -82156500 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 887 198 103 0 0 chr11 39687658 39687687 -82156169 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 887 528 56 0 0 chr11 39687692 39687764 -82156092 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 2 887 2076 85 7 3 chr11 39688517 39688811 -82155045 - L1_Mus4 LINE L1 -4 6632 6338 2 887 794 270 5 20 chr11 39690060 39690260 -82153596 - URR1B DNA MER1_type -28 197 1 2 887 243 179 0 0 chr11 39691258 39691325 -82152531 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 887 22 35 0 0 chr11 39691408 39691437 -82152419 + AT_rich Low_complexity Low_complexity 1 29 0 2 887 270 294 59 76 chr11 39692028 39692146 -82151710 - MER20 DNA MER1_type -91 128 13 2 887 225 0 0 0 chr11 39692253 39692278 -82151578 + (A)n Simple_repeat Simple_repeat 1 25 0 2 887 399 354 77 52 chr11 39692352 39692638 -82151218 - Tigger7 DNA MER2_type -2198 293 1 2 887 180 0 0 0 chr11 39693493 39693513 -82150343 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 887 201 198 12 24 chr11 39693517 39693600 -82150256 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 887 552 277 67 7 chr11 39693601 39693750 -82150106 - B3 SINE B2 -56 160 3 2 887 206 336 77 15 chr11 39694583 39694713 -82149143 + L2a LINE L2 3289 3426 0 2 887 3818 50 0 14 chr11 39694826 39695315 -82148541 - L1Md_F2 LINE L1 0 6582 6101 2 887 31 58 0 0 chr11 39695956 39696008 -82147848 + AT_rich Low_complexity Low_complexity 1 52 0 2 887 37 23 0 0 chr11 39696763 39696807 -82147049 + AT_rich Low_complexity Low_complexity 1 44 0 2 887 22 0 0 0 chr11 39698300 39698322 -82145534 + AT_rich Low_complexity Low_complexity 1 22 0 2 887 2926 164 132 15 chr11 39698402 39698710 -82145146 + RMER6C LTR ERVK 6 353 -337 3 887 660 80 0 0 chr11 39698710 39698810 -82145046 + (GA)n Simple_repeat Simple_repeat 2 101 0 3 887 2926 164 132 15 chr11 39698810 39699114 -82144742 + RMER6C LTR ERVK 354 689 -1 3 887 1175 107 34 6 chr11 39699910 39700089 -82143767 - B2_Mm2 SINE B2 -10 185 2 3 887 902 290 57 66 chr11 39700497 39701212 -82142644 + L1M2 LINE L1 3699 4407 -1736 3 887 1172 274 120 12 chr11 39701214 39701795 -82142061 + Lx6 LINE L1 6455 7432 -28 3 887 997 274 109 8 chr11 39701845 39702342 -82141514 + L1M2 LINE L1 4461 5007 -1136 3 887 228 306 54 0 chr11 39702382 39702493 -82141363 + L1M2 LINE L1 5100 5216 -924 3 887 253 185 19 0 chr11 39702710 39702764 -82141092 + L1MA6 LINE L1 6040 6094 -206 3 887 21 57 0 0 chr11 39702813 39702848 -82141008 + AT_rich Low_complexity Low_complexity 1 35 0 3 887 23 54 0 0 chr11 39703089 39703126 -82140730 + AT_rich Low_complexity Low_complexity 1 37 0 3 887 22 0 0 0 chr11 39704801 39704823 -82139033 + AT_rich Low_complexity Low_complexity 1 22 0 3 887 2223 188 62 46 chr11 39707116 39707569 -82136287 - Lx6 LINE L1 -228 7232 6773 3 887 3577 147 16 73 chr11 39707930 39708611 -82135245 - RLTR26 LTR ERVK 0 642 1 3 887 3308 177 160 1 chr11 39708638 39709267 -82134589 + RLTR25B LTR ERVK 3 707 -321 3 887 288 0 0 0 chr11 39709267 39709299 -82134557 + (ATTG)n Simple_repeat Simple_repeat 3 34 0 3 887 3308 214 83 9 chr11 39709299 39709484 -82134372 + RLTR25B LTR ERVK 708 1028 0 3 887 2600 211 34 9 chr11 39709659 39710185 -82133671 - Lx5 LINE L1 -1 7049 6511 3 887 283 271 0 0 chr11 39710322 39710381 -82133475 - B3A SINE B2 -96 102 44 3 887 1114 155 0 0 chr11 39710451 39710644 -82133212 - L1_Mus4 LINE L1 -6 6630 6438 3 887 768 74 25 0 chr11 39712333 39712454 -82131402 + (TCTA)n Simple_repeat Simple_repeat 1 124 0 3 887 22 0 0 0 chr11 39713891 39713913 -82129943 + AT_rich Low_complexity Low_complexity 1 22 0 3 888 1826 211 14 38 chr11 39717238 39717657 -82126199 - MTC LTR MaLR -8 413 5 3 888 22 35 0 0 chr11 39717732 39717761 -82126095 + AT_rich Low_complexity Low_complexity 1 29 0 3 888 27 81 0 0 chr11 39717894 39717956 -82125900 + AT_rich Low_complexity Low_complexity 1 62 0 3 888 26 30 0 0 chr11 39718087 39718120 -82125736 + AT_rich Low_complexity Low_complexity 1 33 0 3 888 229 323 31 39 chr11 39718469 39718598 -82125258 + L1MC3 LINE L1 6718 6845 -940 3 888 229 323 108 15 chr11 39718866 39719061 -82124795 + L1MC3 LINE L1 7169 7381 -404 3 888 189 100 0 0 chr11 39719525 39719532 -82124324 + (TTTC)n Simple_repeat Simple_repeat 2 8 0 3 888 477 0 0 0 chr11 39719532 39719585 -82124271 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 3 888 189 100 0 0 chr11 39719585 39719607 -82124249 + (TTTC)n Simple_repeat Simple_repeat 4 25 0 3 888 8912 124 20 2 chr11 39719608 39721105 -82122751 - Lx2 LINE L1 -2 6995 5471 3 888 493 309 58 23 chr11 39721109 39721281 -82122575 + B3 SINE B2 38 215 -1 3 888 297 371 46 17 chr11 39721996 39722169 -82121687 + MLT1E1A LTR MaLR 494 671 -9 3 888 387 349 75 23 chr11 39722223 39722437 -82121419 + L2a LINE L2 3202 3426 0 3 888 668 308 15 44 chr11 39722693 39722897 -82120959 - B3A SINE B2 0 198 1 3 888 445 340 31 36 chr11 39723282 39723505 -82120351 + MIR SINE MIR 30 251 -11 3 888 540 328 48 16 chr11 39724067 39724253 -82119603 + B3A SINE B2 2 193 -5 3 888 292 309 49 0 chr11 39724356 39724437 -82119419 + B1F1 SINE Alu 37 121 -28 3 888 297 135 0 0 chr11 39724549 39724601 -82119255 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 888 22 0 0 0 chr11 39725033 39725055 -82118801 + AT_rich Low_complexity Low_complexity 1 22 0 3 888 702 322 123 22 chr11 39725105 39725381 -82118475 - Tigger7 DNA MER2_type -2156 335 32 3 888 1741 129 67 19 chr11 39725392 39725737 -82118119 - ORR1A4 LTR MaLR 0 394 5 3 888 1567 182 83 9 chr11 39727666 39727993 -82115863 - ORR1B1 LTR MaLR -43 351 1 3 888 185 349 0 0 chr11 39728444 39728507 -82115349 + MIR SINE MIR 86 148 -114 3 888 3164 142 128 9 chr11 39729346 39729915 -82113941 + Lx2B LINE L1 6343 6979 -21 3 888 40 21 0 0 chr11 39729984 39730031 -82113825 + AT_rich Low_complexity Low_complexity 1 47 0 3 888 4471 89 44 18 chr11 39730411 39731066 -82112790 - L1_Mus3 LINE L1 -8 6630 5959 3 888 739 291 15 0 chr11 39733645 39733851 -82110005 + B3 SINE B2 1 209 -7 3 888 366 309 48 24 chr11 39734583 39734709 -82109147 - Tigger5 DNA MER2_type -2243 163 35 3 888 252 344 136 12 chr11 39735231 39735393 -82108463 - MER5A DNA MER1_type -6 183 2 3 888 365 71 14 41 chr11 39735795 39735868 -82107988 + L1_Mus3 LINE L1 6563 6633 -5 3 888 345 325 100 0 chr11 39736092 39736252 -82107604 + MIR SINE MIR 13 188 -74 3 888 279 0 0 0 chr11 39738381 39738412 -82105444 + (A)n Simple_repeat Simple_repeat 1 31 0 3 888 1704 118 139 0 chr11 39740431 39740719 -82103137 - ORR1A4 LTR MaLR 0 329 2 3 888 347 303 104 51 chr11 39741123 39741516 -82102340 - L1MA9 LINE L1 -260 6052 5639 3 888 31 58 0 0 chr11 39741621 39741673 -82102183 + AT_rich Low_complexity Low_complexity 1 52 0 3 888 579 107 0 10 chr11 39741959 39742063 -82101793 - L1_Mus3 LINE L1 -1 6637 6535 3 888 2825 153 71 8 chr11 39742063 39742556 -82101300 - L1VL2 LINE L1 -5527 808 285 3 888 3965 78 6 0 chr11 39742620 39743146 -82100710 - L1_Mus1 LINE L1 0 6567 6039 3 888 27974 110 8 2 chr11 39743147 39744330 -82099526 - L1Md_F LINE L1 -419 5464 4275 3 888 510 17 0 0 chr11 39744330 39744389 -82099467 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 888 27974 142 30 30 chr11 39744389 39748394 -82095462 - L1Md_F LINE L1 -1609 4274 271 3 888 503 85 12 0 chr11 39748814 39748896 -82094960 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 888 231 339 92 0 chr11 39749781 39749890 -82093966 + PB1D7 SINE Alu 1 119 -1 3 888 573 279 14 7 chr11 39749955 39750103 -82093753 + B3 SINE B2 66 214 -2 3 888 407 351 38 0 chr11 39750563 39750694 -82093162 - RSINE1 SINE B4 -22 143 8 3 888 659 167 7 0 chr11 39751078 39751216 -82092640 + (TA)n Simple_repeat Simple_repeat 2 140 0 3 888 548 149 296 10 chr11 39752790 39752986 -82090870 + Lx9 LINE L1 7392 7643 -1 3 888 1432 288 7 30 chr11 39753093 39753522 -82090334 - MTD LTR MaLR 0 419 1 3 888 367 320 40 0 chr11 39753522 39753622 -82090234 + PB1D10 SINE Alu 12 115 -2 3 888 450 0 0 0 chr11 39755653 39755703 -82088153 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 888 189 154 0 0 chr11 39755971 39756010 -82087846 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 888 308 23 45 0 chr11 39757482 39757526 -82086330 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 3 888 412 261 162 17 chr11 39757795 39757974 -82085882 - B3 SINE B2 -11 205 1 3 888 396 0 0 0 chr11 39759203 39759247 -82084609 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 888 3786 277 46 83 chr11 39760030 39760825 -82083031 + RMER1A Other Other 1 473 -557 3 888 4555 186 13 14 chr11 39760825 39761734 -82082122 - RMER13B LTR ERVK 0 908 1 3 888 3786 229 49 88 chr11 39761734 39762613 -82081243 + RMER1A Other Other 50 896 -134 3 888 255 114 0 0 chr11 39762613 39762657 -82081199 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 888 3786 229 49 88 chr11 39762657 39762791 -82081065 + RMER1A Other Other 897 1028 -2 3 888 360 64 0 0 chr11 39763900 39763947 -82079909 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 888 689 61 20 0 chr11 39764681 39764779 -82079077 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 3 888 342 0 0 0 chr11 39765709 39765747 -82078109 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 888 315 0 0 0 chr11 39765747 39765781 -82078075 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 888 360 384 59 11 chr11 39765799 39765986 -82077870 + Tigger5 DNA MER2_type 32 227 -2179 3 888 261 98 0 0 chr11 39766018 39766059 -82077797 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 888 1125 281 55 18 chr11 39766222 39766602 -82077254 - MTD LTR MaLR -6 413 20 3 888 671 267 73 18 chr11 39766771 39767016 -82076840 - Lx7 LINE L1 -11 7685 7423 3 888 549 83 0 0 chr11 39767016 39767100 -82076756 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 888 671 267 73 18 chr11 39767100 39767140 -82076716 - Lx7 LINE L1 -274 7422 7384 3 888 5724 76 25 0 chr11 39767140 39767939 -82075917 + RLTR22_Mus LTR ERVK 1 819 -989 3 888 316 343 40 58 chr11 39768155 39768381 -82075475 + RMER12 LTR ERVK 1101 1322 0 3 888 3600 47 0 15 chr11 39768456 39768912 -82074944 + L1_Mus1 LINE L1 6117 6565 -2 3 888 514 245 0 87 chr11 39768918 39769079 -82074777 - Lx7 LINE L1 -361 7335 7189 3 888 459 339 128 58 chr11 39769211 39769514 -82074342 + MLT1A0 LTR MaLR 1 335 -39 3 888 676 218 0 13 chr11 39769636 39769785 -82074071 - B1_Mus1 SINE Alu 0 148 2 3 888 819 309 61 84 chr11 39770040 39770468 -82073388 + RLTR33 LTR ERVK 175 592 -86 3 888 1608 171 16 6 chr11 39771236 39771553 -82072303 - Lx3B LINE L1 -4 6969 6650 3 888 290 318 56 0 chr11 39771793 39771900 -82071956 - B3 SINE B2 0 216 104 3 888 507 60 0 0 chr11 39771906 39771973 -82071883 + (GGGGA)n Simple_repeat Simple_repeat 5 71 0 3 888 276 57 0 0 chr11 39771973 39772008 -82071848 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 888 185 59 0 56 chr11 39774002 39774038 -82069818 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 3 888 4862 116 23 4 chr11 39774126 39774863 -82068993 - Lx3A LINE L1 0 6981 6231 3 888 314 241 106 24 chr11 39775983 39776068 -82067788 - RMER15 LTR ERVL 0 575 484 3 888 3727 38 0 3 chr11 39776068 39776575 -82067281 - L1Md_F2 LINE L1 -648 5934 5429 3 888 5195 58 9 0 chr11 39776575 39777235 -82066621 + L1Md_F2 LINE L1 5917 6582 0 3 888 1282 231 144 10 chr11 39777238 39777641 -82066215 - RMER15 LTR ERVL -78 497 41 3 888 486 271 51 46 chr11 39780274 39780471 -82063385 - MTEb LTR MaLR -15 364 167 3 888 248 87 22 0 chr11 39780477 39780523 -82063333 - Lx2 LINE L1 -11 6986 6940 3 888 526 326 11 17 chr11 39780523 39780698 -82063158 - MTEb LTR MaLR -191 188 15 3 888 24 32 0 0 chr11 39780875 39780906 -82062950 + AT_rich Low_complexity Low_complexity 1 31 0 3 888 410 344 12 30 chr11 39781072 39781240 -82062616 + RSINE1 SINE B4 1 165 0 3 888 44 84 0 0 chr11 39781646 39781753 -82062103 + AT_rich Low_complexity Low_complexity 1 107 0 4 888 466 203 119 24 chr11 39781761 39781887 -82061969 - Lx3B LINE L1 -3 6970 6833 4 888 1522 318 72 10 chr11 39782261 39782868 -82060988 - Lx8 LINE L1 -256 7217 6573 4 888 469 301 131 47 chr11 39782914 39783235 -82060621 - Lx8 LINE L1 -993 6480 6133 4 888 1324 280 56 16 chr11 39783397 39783847 -82060009 + Lx8 LINE L1 7001 7468 -5 4 888 558 0 0 0 chr11 39783851 39783913 -82059943 + (GAAA)n Simple_repeat Simple_repeat 4 65 0 4 888 587 108 0 11 chr11 39783915 39784009 -82059847 + (GGGA)n Simple_repeat Simple_repeat 2 94 0 4 888 432 51 0 0 chr11 39784199 39784258 -82059598 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 888 22 0 0 0 chr11 39785733 39785755 -82058101 + AT_rich Low_complexity Low_complexity 1 22 0 4 888 1152 283 15 30 chr11 39785993 39786185 -82057671 - MTE2b LTR MaLR 0 379 190 4 888 2097 226 26 97 chr11 39786185 39786843 -82057013 + RMER19C LTR ERVK 1 611 0 4 888 1152 283 15 30 chr11 39786843 39786978 -82056878 - MTE2b LTR MaLR -190 189 58 4 888 1508 257 11 67 chr11 39787048 39787481 -82056375 - MTD LTR MaLR 0 419 11 4 888 583 294 11 37 chr11 39787484 39787671 -82056185 + Lx6 LINE L1 7179 7360 -100 4 888 3487 195 72 17 chr11 39788166 39788871 -82054985 - Lx5 LINE L1 0 7050 6307 4 888 21 0 0 0 chr11 39789404 39789425 -82054431 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 1591 216 41 15 chr11 39790619 39791010 -82052846 - Lx9 LINE L1 -4 7640 7240 4 888 275 220 209 48 chr11 39791325 39791430 -82052426 + B1_Mus2 SINE Alu 13 134 -13 4 888 502 319 20 27 chr11 39791412 39791560 -82052296 + B3A SINE B2 45 191 -7 4 888 218 160 0 20 chr11 39791748 39791799 -82052057 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 4 888 417 362 0 61 chr11 39792131 39792328 -82051528 - B3A SINE B2 -13 185 1 4 888 814 143 31 8 chr11 39792499 39792758 -82051098 + (TAGA)n Simple_repeat Simple_repeat 1 264 0 4 888 3621 182 55 85 chr11 39792759 39793400 -82050456 + RLTR25A LTR ERVK 17 692 -411 4 888 1181 61 0 0 chr11 39793400 39793547 -82050309 + B1_Mus2 SINE Alu 1 147 0 4 888 3621 182 55 85 chr11 39793547 39793798 -82050058 + RLTR25A LTR ERVK 693 882 -221 4 888 361 145 26 0 chr11 39793801 39793877 -82049979 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 888 32531 66 1 1 chr11 39794007 39799002 -82044854 - L1Md_F2 LINE L1 0 6582 1585 4 888 896 188 10 30 chr11 39799003 39799206 -82044650 - L1VL1 LINE L1 -6223 199 1 4 888 289 234 16 0 chr11 39799221 39799285 -82044571 + RLTR25A LTR ERVK 1037 1101 -2 4 888 360 64 0 0 chr11 39799288 39799335 -82044521 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 4 888 832 341 92 9 chr11 39799445 39799791 -82044065 + MTEa LTR MaLR 3 377 -2 4 888 3172 317 105 46 chr11 39799792 39800212 -82043644 + MTEa-int LTR MaLR 1 455 -1125 4 888 354 61 0 0 chr11 39800212 39800261 -82043595 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 888 3172 317 105 46 chr11 39800261 39801306 -82042550 + MTEa-int LTR MaLR 456 1553 -27 4 888 3720 175 51 86 chr11 39801313 39802150 -82041706 - RLTR13C2 LTR ERVK 0 808 1 4 888 1069 279 39 22 chr11 39802162 39802525 -82041331 + MTEa LTR MaLR 3 371 -8 4 888 522 296 149 17 chr11 39802927 39803229 -82040627 - L2 LINE L2 -349 3070 2729 4 888 21 89 0 0 chr11 39803486 39803542 -82040314 + AT_rich Low_complexity Low_complexity 1 56 0 4 888 1165 245 128 44 chr11 39803910 39804153 -82039703 + RMER6C LTR ERVK 1 285 -405 4 888 495 0 0 0 chr11 39804153 39804208 -82039648 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 888 1169 169 80 8 chr11 39804208 39804462 -82039394 + RMER6C LTR ERVK 286 690 0 4 888 1281 300 92 35 chr11 39804463 39804971 -82038885 + Lx8 LINE L1 6445 6981 -492 4 888 910 132 36 7 chr11 39804971 39805139 -82038717 - ORR1A1 LTR MaLR 0 367 184 4 888 33325 71 1 16 chr11 39805139 39810252 -82033604 + L1Md_F2 LINE L1 552 5586 -297 4 888 7959 47 7 1 chr11 39810252 39811239 -82032617 + L1Md_F2 LINE L1 5587 6579 -3 4 888 1002 199 94 5 chr11 39811244 39811446 -82032410 - ORR1A1 LTR MaLR -122 224 5 4 888 561 338 46 42 chr11 39811450 39811928 -82031928 + Lx8 LINE L1 6977 7456 -17 4 888 24 0 0 0 chr11 39813583 39813607 -82030249 + AT_rich Low_complexity Low_complexity 1 24 0 4 888 25 31 0 0 chr11 39813680 39813712 -82030144 + AT_rich Low_complexity Low_complexity 1 32 0 4 888 276 279 12 48 chr11 39813862 39813945 -82029911 - ID4_ SINE ID -3 80 1 4 888 320 281 0 0 chr11 39814210 39814292 -82029564 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 888 1519 294 20 28 chr11 39814295 39814795 -82029061 - Lx7 LINE L1 -377 7319 6824 4 888 351 158 0 0 chr11 39815042 39815147 -82028709 + (CA)n Simple_repeat Simple_repeat 1 105 0 4 888 247 280 56 65 chr11 39815330 39815437 -82028419 + ORR1E LTR MaLR 43 148 -211 4 888 2569 249 12 4 chr11 39815629 39816190 -82027666 - Lx5 LINE L1 -3 7047 6482 4 888 476 301 119 14 chr11 39816420 39816639 -82027217 + MLT1A0 LTR MaLR 124 365 0 4 888 192 40 0 0 chr11 39817108 39817133 -82026723 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 888 2268 164 113 45 chr11 39817310 39817515 -82026341 + RLTR11A LTR ERVK 10 224 -304 4 888 261 0 0 0 chr11 39817515 39817544 -82026312 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 888 2268 164 113 45 chr11 39817544 39817824 -82026032 + RLTR11A LTR ERVK 225 528 0 4 888 710 289 15 83 chr11 39817827 39818091 -82025765 - Lx8 LINE L1 -190 7283 7038 4 888 285 75 0 0 chr11 39818608 39818648 -82025208 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 4 888 531 69 0 0 chr11 39818956 39819028 -82024828 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 4 888 366 363 108 43 chr11 39820098 39820449 -82023407 + MLT1I LTR MaLR 30 403 -8 4 888 606 222 123 11 chr11 39820823 39821010 -82022846 + B3 SINE B2 2 209 -7 4 888 324 0 0 0 chr11 39821025 39821061 -82022795 + (CAAGA)n Simple_repeat Simple_repeat 3 38 0 4 888 501 58 0 0 chr11 39821947 39822016 -82021840 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 888 564 15 0 0 chr11 39822016 39822080 -82021776 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 888 22 56 0 0 chr11 39822182 39822218 -82021638 + AT_rich Low_complexity Low_complexity 1 36 0 4 888 2794 77 44 10 chr11 39822348 39822756 -82021100 - L1_Mus3 LINE L1 -6 6632 6211 4 888 233 288 106 50 chr11 39823021 39823200 -82020656 - Lx8 LINE L1 -15 7458 7270 4 888 249 289 137 36 chr11 39823236 39823484 -82020372 - L1MA7 LINE L1 -6 6294 6022 4 888 677 103 8 0 chr11 39824259 39824376 -82019480 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 4 888 538 109 10 10 chr11 39824432 39824534 -82019322 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 4 888 204 122 0 0 chr11 39824552 39824593 -82019263 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 888 216 67 0 0 chr11 39825263 39825293 -82018563 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 888 585 340 5 0 chr11 39825535 39825750 -82018106 + B3 SINE B2 1 216 0 4 888 201 74 0 0 chr11 39827985 39828012 -82015844 + (CAA)n Simple_repeat Simple_repeat 3 29 0 4 888 203 143 48 0 chr11 39828320 39828362 -82015494 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 4 888 225 0 0 0 chr11 39828611 39828636 -82015220 + (A)n Simple_repeat Simple_repeat 1 25 0 4 888 563 216 84 13 chr11 39829482 39829637 -82014219 + ORR1D2 LTR MaLR 196 361 -9 4 888 946 140 188 0 chr11 39832029 39832215 -82011641 + URR1B DNA MER1_type 5 225 0 4 888 597 378 24 50 chr11 39832242 39832540 -82011316 + B4A SINE B4 1 290 -2 4 888 1056 16 0 0 chr11 39832560 39832682 -82011174 + (GA)n Simple_repeat Simple_repeat 2 123 0 4 888 227 296 226 15 chr11 39832828 39833027 -82010829 + MIRb SINE MIR 27 267 -1 4 888 812 325 7 63 chr11 39833833 39834040 -82009816 + B4A SINE B4 9 204 -88 4 888 4299 193 57 27 chr11 39834040 39834920 -82008936 + RMER13B LTR ERVK 3 908 0 4 888 812 325 7 63 chr11 39834920 39834981 -82008875 + B4A SINE B4 205 262 -30 4 888 420 20 0 0 chr11 39834999 39835048 -82008808 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 888 306 134 0 0 chr11 39835049 39835116 -82008740 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 888 223 284 57 65 chr11 39836706 39836830 -82007026 + MIRm SINE MIR 154 276 0 4 888 3233 148 133 22 chr11 39839170 39839841 -82004015 - Lx2 LINE L1 -1 6996 6252 4 888 258 304 156 0 chr11 39841959 39842094 -82001762 - L2a LINE L2 -5 3421 3266 4 888 303 154 12 37 chr11 39842374 39842455 -82001401 + (ATG)n Simple_repeat Simple_repeat 3 81 0 4 888 346 275 0 0 chr11 39844021 39844101 -81999755 - ID4_ SINE ID -3 80 1 4 888 543 56 0 0 chr11 39844355 39844426 -81999430 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 888 421 378 6 11 chr11 39844757 39844931 -81998925 + MIRb SINE MIR 58 230 -38 4 888 209 269 34 119 chr11 39845277 39845454 -81998402 + L2a LINE L2 3209 3349 -77 4 889 21 0 0 0 chr11 39846161 39846182 -81997674 + AT_rich Low_complexity Low_complexity 1 21 0 4 889 352 311 29 58 chr11 39848272 39848443 -81995413 - MamRep137 DNA TcMar? -210 234 69 4 889 2790 33 0 9 chr11 39848470 39848806 -81995050 - L1Md_F3 LINE L1 -15 6569 6237 4 889 1064 266 26 29 chr11 39849154 39849464 -81994392 - RLTR16 LTR ERVK -196 309 1 4 889 453 66 0 0 chr11 39850897 39850958 -81992898 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 889 333 0 0 0 chr11 39850958 39850994 -81992862 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 889 546 82 0 0 chr11 39851370 39851455 -81992401 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 4 889 6388 115 23 19 chr11 39851456 39852575 -81991281 - L1_Mus4 LINE L1 -20 6616 5494 4 889 2082 57 7 44 chr11 39852575 39852871 -81990985 - L1_Mus1 LINE L1 0 6567 6283 4 889 3978 150 15 152 chr11 39852871 39853527 -81990329 - L1_Mus4 LINE L1 -390 5493 4964 4 889 408 308 50 32 chr11 39853621 39853839 -81990017 - L1MA5A LINE L1 -399 5898 5677 4 889 274 344 158 31 chr11 39853955 39854183 -81989673 - MER21B LTR ERV1 -200 663 407 4 889 261 318 0 31 chr11 39855213 39855278 -81988578 + ID4_ SINE ID 11 73 -10 4 889 479 45 0 15 chr11 39855282 39855349 -81988507 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 4 889 5416 80 34 1 chr11 39855408 39856151 -81987705 - L1_Mus2 LINE L1 0 6566 5800 4 889 360 59 29 14 chr11 39856151 39856220 -81987636 + (TTTTTG)n Simple_repeat Simple_repeat 2 71 0 4 889 5578 34 0 0 chr11 39856236 39856890 -81986966 - L1Md_T LINE L1 -12 6570 5917 5 889 2833 84 11 34 chr11 39856890 39857333 -81986523 + L1Md_Gf LINE L1 338 770 -5752 5 889 5129 105 17 0 chr11 39857329 39858156 -81985700 - L1_Mus2 LINE L1 -1187 5810 4948 4 889 2799 172 49 44 chr11 39858160 39859411 -81984445 - L1VL4 LINE L1 -2403 1414 143 5 889 2507 221 46 19 chr11 39859472 39860175 -81983681 - Lx5 LINE L1 -5 7053 6356 5 889 6923 73 1 3 chr11 39860170 39861180 -81982676 - L1_Mus1 LINE L1 -53 6514 5507 5 889 3282 174 87 12 chr11 39861177 39862308 -81981548 - Lx5 LINE L1 -706 6344 5109 5 889 1595 216 93 15 chr11 39862780 39863189 -81980667 - BGLII_B LTR ERVK 0 441 1 5 889 321 322 139 47 chr11 39863325 39863599 -81980257 + MER113A DNA MER1_type 10 308 -6 5 889 22 0 0 0 chr11 39863703 39863725 -81980131 + AT_rich Low_complexity Low_complexity 1 22 0 5 889 185 132 26 0 chr11 39864371 39864409 -81979447 + CT-rich Low_complexity Low_complexity 3 41 0 5 889 303 28 0 0 chr11 39864773 39864809 -81979047 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 889 432 0 0 0 chr11 39865015 39865063 -81978793 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 889 207 228 18 0 chr11 39866077 39866134 -81977722 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 889 269 291 48 19 chr11 39866495 39866600 -81977256 - ORR1E LTR MaLR 0 379 272 5 889 185 83 0 27 chr11 39866608 39866645 -81977211 + (TTGG)n Simple_repeat Simple_repeat 2 37 0 5 889 207 0 0 0 chr11 39866643 39866666 -81977190 + (T)n Simple_repeat Simple_repeat 1 23 0 5 889 343 326 64 60 chr11 39866674 39866909 -81976947 - ORR1E LTR MaLR -115 244 9 5 889 298 341 51 23 chr11 39867105 39867282 -81976574 + LTR82B Low_complexity ERVL 98 279 -551 5 889 327 365 46 26 chr11 39867284 39867436 -81976420 + RSINE1 SINE B4 3 157 -8 5 889 1562 51 0 0 chr11 39867539 39867734 -81976122 + L1_Mus1 LINE L1 6373 6567 0 5 889 1353 148 71 158 chr11 39867972 39868233 -81975623 + RMER17C LTR ERVK 1 230 -180 5 889 825 86 0 0 chr11 39868233 39868361 -81975495 + (TC)n Simple_repeat Simple_repeat 2 129 0 5 889 1353 148 71 158 chr11 39868361 39868548 -81975308 + RMER17C LTR ERVK 231 410 0 5 889 225 292 53 40 chr11 39868574 39868649 -81975207 + LTR82B Low_complexity ERVL 729 804 -26 5 889 294 154 12 25 chr11 39869152 39869232 -81974624 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 5 889 23 54 0 0 chr11 39869784 39869821 -81974035 + AT_rich Low_complexity Low_complexity 1 37 0 5 889 4352 120 60 10 chr11 39869829 39870542 -81973314 - Lx3B LINE L1 -2 6971 6223 5 889 1123 163 5 0 chr11 39871104 39871307 -81972549 - Lx2B LINE L1 -8 6992 6789 5 889 566 302 115 6 chr11 39871394 39871577 -81972279 - B3 SINE B2 0 216 14 5 889 28 48 0 0 chr11 39871609 39871651 -81972205 + AT_rich Low_complexity Low_complexity 1 42 0 5 889 534 137 0 0 chr11 39872073 39872168 -81971688 + (GA)n Simple_repeat Simple_repeat 2 96 0 5 889 261 312 92 61 chr11 39873212 39873376 -81970480 + MIR SINE MIR 27 195 -67 5 889 543 31 0 0 chr11 39873429 39873494 -81970362 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 889 475 338 99 25 chr11 39873629 39873872 -81969984 + MLT1C LTR MaLR 203 463 -4 5 889 327 293 45 6 chr11 39874246 39874437 -81969419 - L1MB4 LINE L1 -41 6142 5939 5 889 233 330 87 29 chr11 39875154 39875257 -81968599 + B4 SINE B4 15 123 -169 5 889 2357 89 42 3 chr11 39875340 39875693 -81968163 - L1Md_F2 LINE L1 -274 6308 5941 5 889 1935 57 33 0 chr11 39875693 39875938 -81967918 + L1_Mus1 LINE L1 6314 6566 -1 5 889 256 266 70 60 chr11 39876946 39877046 -81966810 - PB1D7 SINE Alu -19 101 1 5 889 2853 36 0 3 chr11 39877245 39877583 -81966273 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 889 52710 22 17 6 chr11 39877583 39883987 -81959869 - IAPEz-int LTR ERVK 0 6481 8 5 889 2853 36 0 3 chr11 39883987 39884325 -81959531 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 889 843 199 49 11 chr11 39884784 39884801 -81959055 - B2_Mm2 SINE B2 -4 191 175 5 889 180 0 0 0 chr11 39884801 39884821 -81959035 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 889 843 199 49 11 chr11 39884821 39884986 -81958870 - B2_Mm2 SINE B2 -21 174 2 5 889 300 233 97 32 chr11 39885430 39885523 -81958333 + L1MDa LINE L1 2408 2506 -4127 5 889 207 65 21 42 chr11 39885528 39885576 -81958280 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 889 414 0 0 0 chr11 39886450 39886496 -81957360 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 889 495 202 0 0 chr11 39886497 39886601 -81957255 + (TATATG)n Simple_repeat Simple_repeat 6 109 0 5 889 1711 217 61 3 chr11 39886647 39887008 -81956848 - MTC LTR MaLR -39 382 1 5 889 281 204 37 15 chr11 39887465 39887599 -81956257 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 889 465 169 22 39 chr11 39887631 39887810 -81956046 + (CATA)n Simple_repeat Simple_repeat 4 179 0 5 889 445 191 6 44 chr11 39887870 39888051 -81955805 + (CATA)n Simple_repeat Simple_repeat 4 177 0 5 889 630 198 18 0 chr11 39888026 39888193 -81955663 + (CA)n Simple_repeat Simple_repeat 1 170 0 5 889 4636 136 58 4 chr11 39888659 39889470 -81954386 - Lx2 LINE L1 -2 6995 6141 5 889 280 154 46 0 chr11 39891927 39891992 -81951864 + GA-rich Low_complexity Low_complexity 3 70 0 5 889 1221 42 18 0 chr11 39891997 39892165 -81951691 + (GGAA)n Simple_repeat Simple_repeat 4 174 0 5 889 582 263 35 45 chr11 39893719 39893918 -81949938 - RLTR14 LTR ERV1 -44 338 142 5 889 542 269 30 48 chr11 39893924 39894092 -81949764 - RLTR14 LTR ERV1 -216 166 2 5 889 4186 182 31 11 chr11 39894338 39895142 -81948714 - Lx4B LINE L1 0 7058 6239 5 889 243 275 12 0 chr11 39895436 39895516 -81948340 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 5 889 399 289 10 0 chr11 39895611 39895715 -81948141 + Lx5 LINE L1 6549 6653 -397 5 889 1897 174 67 28 chr11 39895710 39896116 -81947740 - Lx4B LINE L1 -393 6604 6155 5 889 2037 185 15 23 chr11 39896117 39896516 -81947340 + Lx4B LINE L1 6652 7047 -11 5 889 21 0 0 0 chr11 39896518 39896539 -81947317 + AT_rich Low_complexity Low_complexity 1 21 0 5 889 216 86 0 0 chr11 39896558 39896593 -81947263 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 889 7778 55 4 8 chr11 39896616 39897789 -81946067 - L1Md_F2 LINE L1 -2 6580 5413 5 889 812 55 9 9 chr11 39897789 39897900 -81945956 + B1_Mus2 SINE Alu 37 147 0 5 889 207 25 75 0 chr11 39897902 39897942 -81945914 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 889 939 195 143 94 chr11 39897955 39898221 -81945635 + Lx5 LINE L1 6636 6914 -136 5 889 1498 148 88 11 chr11 39898247 39898521 -81945335 + Lx4B LINE L1 6258 6552 -506 5 889 510 258 12 11 chr11 39898519 39898667 -81945189 + Lx4B LINE L1 6867 7018 -40 5 889 1135 62 7 0 chr11 39898716 39898861 -81944995 - B1_Mus2 SINE Alu -1 146 1 5 889 477 194 9 55 chr11 39899052 39899161 -81944695 + B3A SINE B2 49 152 -46 5 889 339 25 0 0 chr11 39899175 39899215 -81944641 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 889 33 0 0 0 chr11 39899900 39899933 -81943923 + AT_rich Low_complexity Low_complexity 1 33 0 5 889 29 0 0 0 chr11 39900360 39900389 -81943467 + AT_rich Low_complexity Low_complexity 1 29 0 5 889 29 0 0 0 chr11 39900769 39900798 -81943058 + AT_rich Low_complexity Low_complexity 1 29 0 5 889 22605 164 40 5 chr11 39900833 39905969 -81937887 - Lx LINE L1 -7 6647 1326 5 889 3942 138 8 183 chr11 39906165 39906333 -81937523 - Lx LINE L1 -4454 1429 1295 5 889 1017 114 0 0 chr11 39906333 39906473 -81937383 - B1_Mus1 SINE Alu -8 140 1 5 889 3942 147 11 83 chr11 39906473 39907196 -81936660 - Lx LINE L1 -5354 1303 600 5 889 274 214 136 27 chr11 39907334 39907509 -81936347 - L1MC3 LINE L1 -81 7704 7569 5 889 25 31 0 0 chr11 39907564 39907596 -81936260 + AT_rich Low_complexity Low_complexity 1 32 0 5 889 493 324 114 22 chr11 39907798 39908202 -81935654 - L1MC3 LINE L1 -262 7523 7083 5 889 389 253 98 22 chr11 39908224 39908413 -81935443 + MLT2B4 LTR ERVL 5 214 -183 5 889 372 310 74 47 chr11 39908526 39908675 -81935181 + MLT2D LTR ERVL 406 558 -2 5 889 261 0 0 0 chr11 39908800 39908829 -81935027 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 889 291 292 51 1 chr11 39908921 39909119 -81934737 - L1MC3 LINE L1 -2017 5978 5771 5 889 340 359 100 0 chr11 39909207 39909427 -81934429 - L1MC3 LINE L1 -704 5640 5399 5 889 3467 27 2 2 chr11 39909695 39910106 -81933750 - L1Md_F3 LINE L1 -2 6582 6172 5 889 396 296 43 58 chr11 39910526 39910734 -81933122 - B3 SINE B2 -8 208 4 5 889 259 324 56 47 chr11 39912302 39912409 -81931447 - ORR1E LTR MaLR -208 151 44 5 889 260 348 0 11 chr11 39913223 39913238 -81930618 - B4A SINE B4 -202 90 76 5 889 405 0 0 0 chr11 39913238 39913283 -81930573 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 889 260 348 0 11 chr11 39913283 39913357 -81930499 - B4A SINE B4 -217 75 2 5 889 363 308 59 75 chr11 39913363 39913543 -81930313 + MER5A DNA MER1_type 1 177 -12 5 889 2012 157 137 11 chr11 39913543 39913989 -81929867 - RMER6C LTR ERVK 0 690 189 5 889 4462 80 10 5 chr11 39913989 39914603 -81929253 + L1_Mus3 LINE L1 6017 6633 -5 5 889 275 0 0 0 chr11 39914613 39914647 -81929209 + L1_Mus4 LINE L1 5782 5815 -821 5 889 444 120 0 57 chr11 39914646 39914734 -81929122 + Lx LINE L1 6541 6623 -31 5 889 2299 93 15 9 chr11 39914734 39915071 -81928785 + L1_Mus2 LINE L1 6227 6565 -1 5 889 1268 173 0 0 chr11 39915074 39915282 -81928574 - RMER6C LTR ERVK -510 210 3 5 889 1247 220 156 15 chr11 39917362 39917519 -81926337 + ORR1D1 LTR MaLR 1 179 -195 5 889 392 0 0 20 chr11 39917519 39917568 -81926288 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 889 1247 220 156 15 chr11 39917568 39917738 -81926118 + ORR1D1 LTR MaLR 180 374 0 5 889 1971 129 25 25 chr11 39918293 39918619 -81925237 + ORR1A4 LTR MaLR 1 326 -3 5 889 10043 81 23 2 chr11 39919354 39920861 -81922995 + Lx3_Mus LINE L1 5466 7009 0 5 889 1272 296 108 22 chr11 39921257 39921810 -81922046 + Lx8 LINE L1 6867 7467 -6 5 889 354 143 0 0 chr11 39923110 39923173 -81920683 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 889 475 329 57 13 chr11 39923174 39923331 -81920525 - RSINE1 SINE B4 0 165 2 5 889 248 335 136 25 chr11 39924479 39924641 -81919215 - MIR SINE MIR -62 200 21 5 889 205 349 98 34 chr11 39924728 39924967 -81918889 + MIR SINE MIR 17 258 -4 5 889 472 269 107 118 chr11 39924967 39925350 -81918506 - MTE2a LTR MaLR 0 379 1 5 889 1608 119 7 37 chr11 39925414 39925710 -81918146 + Lx2A1 LINE L1 6717 7003 -5 5 889 207 0 0 0 chr11 39925788 39925811 -81918045 + (TTG)n Simple_repeat Simple_repeat 1 23 0 5 889 190 0 32 32 chr11 39925814 39925845 -81918011 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 889 1121 58 0 0 chr11 39925845 39925983 -81917873 - B1_Mm SINE Alu -8 139 2 6 889 24 0 0 0 chr11 39925994 39926018 -81917838 + AT_rich Low_complexity Low_complexity 1 24 0 6 889 200 111 28 0 chr11 39926109 39926145 -81917711 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 889 1744 284 22 19 chr11 39926362 39926921 -81916935 - Lx6 LINE L1 -26 7434 6500 6 889 431 208 13 0 chr11 39926928 39927005 -81916851 + Lx7 LINE L1 7029 7106 -590 6 889 22 0 0 0 chr11 39927029 39927051 -81916805 + AT_rich Low_complexity Low_complexity 1 22 0 6 889 392 293 8 0 chr11 39927446 39927579 -81916277 + L1M2 LINE L1 5632 5765 -526 6 889 1277 282 62 13 chr11 39927592 39927966 -81915890 - MTD LTR MaLR -13 406 15 6 889 337 341 43 0 chr11 39928389 39928527 -81915329 + MER58A DNA MER1_type 66 209 -15 6 889 1392 40 6 0 chr11 39928950 39929124 -81914732 + L1_Mus2 LINE L1 6392 6566 0 6 889 319 295 0 21 chr11 39930122 39930219 -81913637 + RMER15 LTR ERVL 296 390 -185 6 889 225 331 121 54 chr11 39930350 39930446 -81913410 + MLT1A0 LTR MaLR 23 131 -234 6 889 907 85 77 0 chr11 39930446 39930576 -81913280 + B1_Mur4 SINE Alu 2 141 -9 6 889 1107 89 0 0 chr11 39930577 39930734 -81913122 + (GAAA)n Simple_repeat Simple_repeat 4 160 0 6 889 356 312 318 22 chr11 39930734 39930917 -81912939 + MLT1A0 LTR MaLR 132 364 -1 6 889 211 371 0 28 chr11 39932165 39932237 -81911619 - AmnSINE1 SINE SINE -504 71 2 6 889 430 304 35 0 chr11 39933092 39933207 -81910649 - PB1D7 SINE Alu 0 120 2 6 889 221 286 0 0 chr11 39933308 39933357 -81910499 - ID4 SINE ID -19 64 16 6 889 1183 55 12 12 chr11 39933417 39933582 -81910274 - MTB LTR MaLR 0 400 236 6 889 5854 102 14 82 chr11 39933559 39934601 -81909255 + MTA_Mm-int LTR MaLR 127 1098 0 6 889 1184 124 0 49 chr11 39934601 39934805 -81909051 + MTA_Mm LTR MaLR 1 194 -213 6 889 6567 99 2 38 chr11 39934805 39935813 -81908043 + L1Md_F2 LINE L1 4615 5586 -297 6 889 7856 59 0 4 chr11 39935814 39936812 -81907044 + L1Md_F2 LINE L1 5588 6581 -1 6 889 4275 60 0 7 chr11 39936848 39937533 -81906323 + L1_Mus1 LINE L1 5309 5985 -582 6 889 2476 65 3 6 chr11 39937535 39937938 -81905918 + L1_Mus1 LINE L1 6233 6567 0 6 889 1616 53 5 5 chr11 39937940 39938150 -81905706 + MTA_Mm LTR MaLR 186 395 -1 6 889 266 349 8 25 chr11 39938168 39938298 -81905558 - B1_Mus2 SINE Alu -3 124 3 6 889 2620 69 26 0 chr11 39938489 39938838 -81905018 - L1_Mus1 LINE L1 -1 6566 6209 6 889 21 82 0 0 chr11 39939782 39939831 -81904025 + AT_rich Low_complexity Low_complexity 1 49 0 6 889 761 113 27 0 chr11 39940516 39940666 -81903190 + (TAGA)n Simple_repeat Simple_repeat 2 155 0 6 889 429 269 28 0 chr11 39941370 39941478 -81902378 - PB1D9 SINE Alu -7 113 3 6 889 286 319 86 0 chr11 39942876 39943008 -81900848 - MIRc SINE MIR -74 188 48 6 889 183 241 35 53 chr11 39943150 39943207 -81900649 - L4 LINE RTE -255 1774 1719 6 889 715 306 87 27 chr11 39943573 39944244 -81899612 - L1M2 LINE L1 -627 5676 4961 6 889 601 290 141 17 chr11 39944248 39944851 -81899005 + L1M2 LINE L1 4153 4830 -1310 6 889 371 191 15 0 chr11 39945386 39945454 -81898402 + MTD LTR MaLR 351 419 0 6 889 33 66 0 0 chr11 39945598 39945659 -81898197 + AT_rich Low_complexity Low_complexity 1 61 0 6 889 270 0 0 0 chr11 39946527 39946557 -81897299 + (T)n Simple_repeat Simple_repeat 1 30 0 6 889 2148 132 3 0 chr11 39947563 39947881 -81895975 + ORR1A2 LTR MaLR 1 319 -8 6 889 2172 201 81 33 chr11 39948397 39948906 -81894950 - RMER16 LTR ERVK 0 533 1 6 889 183 42 0 0 chr11 39949190 39949214 -81894642 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 6 889 7674 85 60 1 chr11 39949214 39950300 -81893556 - Lx3_Mus LINE L1 -10 6999 5850 6 889 231 190 0 0 chr11 39950526 39950584 -81893272 + (CAGA)n Simple_repeat Simple_repeat 2 59 0 6 889 867 267 68 26 chr11 39952703 39953004 -81890852 - ORR1E LTR MaLR 0 359 31 6 889 6579 111 37 14 chr11 39953004 39954031 -81889825 - Lx3_Mus LINE L1 -162 6847 5797 6 889 4096 145 164 9 chr11 39954019 39954298 -81889558 + L1_Mus3 LINE L1 4952 5235 -651 6 889 365 0 0 22 chr11 39954298 39954344 -81889512 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 889 420 20 0 0 chr11 39954344 39954392 -81889464 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 889 7009 84 94 7 chr11 39954392 39955600 -81888256 + L1_Mus3 LINE L1 5236 6633 -5 6 889 2022 94 10 20 chr11 39955603 39955895 -81887961 + L1_Mur1 LINE L1 5467 5755 -131 6 889 618 176 0 0 chr11 39956947 39957066 -81886790 + (TA)n Simple_repeat Simple_repeat 1 119 0 6 889 405 349 58 52 chr11 39957066 39957220 -81886636 - RSINE1 SINE B4 0 165 11 6 889 30 83 0 0 chr11 39957346 39957418 -81886438 + AT_rich Low_complexity Low_complexity 1 72 0 6 889 810 271 14 32 chr11 39958119 39958336 -81885520 + B3 SINE B2 3 215 -1 6 889 331 273 82 22 chr11 39958410 39958644 -81885212 + MER96B DNA hAT 121 417 0 6 889 486 0 0 0 chr11 39959101 39959155 -81884701 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 889 989 296 48 34 chr11 39959702 39960058 -81883798 + MLT1A0 LTR MaLR 5 365 0 6 889 191 197 0 41 chr11 39960277 39960399 -81883457 + (TCTCTG)n Simple_repeat Simple_repeat 2 118 0 6 889 459 299 86 73 chr11 39960409 39960629 -81883227 - MLT1D LTR MaLR -259 246 24 6 889 369 353 26 0 chr11 39962483 39962599 -81881257 - PB1D7 SINE Alu -1 119 1 6 889 387 0 0 0 chr11 39962810 39962853 -81881003 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 889 425 103 0 14 chr11 39964272 39964341 -81879515 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 6 889 819 163 0 0 chr11 39964799 39964946 -81878910 + GA-rich Low_complexity Low_complexity 3 149 0 6 889 190 243 0 0 chr11 39965462 39965499 -81878357 - L2c LINE L2 -75 3312 3276 6 889 202 330 58 85 chr11 39965584 39965773 -81878083 + MIR SINE MIR 24 207 -55 6 889 434 245 18 36 chr11 39965984 39966094 -81877762 - ID_B1 SINE B4 0 224 117 6 889 359 218 100 0 chr11 39966768 39966878 -81876978 - Lx9 LINE L1 -7 7637 7517 6 889 234 0 0 0 chr11 39966885 39966911 -81876945 + (TGG)n Simple_repeat Simple_repeat 1 26 0 6 889 378 0 0 0 chr11 39966911 39966953 -81876903 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 889 1189 214 43 0 chr11 39966956 39967213 -81876643 - Lx9 LINE L1 -239 7405 7138 6 889 669 234 82 41 chr11 39967218 39967243 -81876613 - B3 SINE B2 -12 204 180 6 889 342 0 0 0 chr11 39967243 39967281 -81876575 + (TATG)n Simple_repeat Simple_repeat 2 39 0 6 889 693 234 82 41 chr11 39967281 39967451 -81876405 - B3A SINE B2 -37 179 1 6 889 216 0 0 0 chr11 39967904 39967928 -81875928 + (CCTG)n Simple_repeat Simple_repeat 1 24 0 6 889 264 122 0 0 chr11 39968001 39968042 -81875814 + (TATG)n Simple_repeat Simple_repeat 3 43 0 6 889 235 211 75 19 chr11 39968120 39968173 -81875683 + MER58D DNA MER1_type 330 385 -1 6 889 742 293 20 85 chr11 39969925 39970231 -81873625 + B4A SINE B4 1 286 -6 6 889 6789 91 66 11 chr11 39971173 39972359 -81871497 - L1_Mus3 LINE L1 -2 6636 5387 6 889 4385 154 30 79 chr11 39972359 39973308 -81870548 + RLTR13D6 LTR ERVK 1 902 0 6 889 1507 135 19 4 chr11 39973308 39973568 -81870288 - L1_Mus3 LINE L1 -491 5392 5129 6 889 3131 117 0 24 chr11 39973569 39974068 -81869788 + Lx2 LINE L1 4631 5117 -766 6 111 13173 124 8 4 chr11 39974902 39977801 -81866055 - L1_Mus3 LINE L1 -1 6637 3727 6 890 1913 98 25 0 chr11 39977920 39978196 -81865660 - Lx2 LINE L1 0 6997 6715 6 890 516 170 9 9 chr11 39978199 39978306 -81865550 - Lx2 LINE L1 -515 6482 6376 6 890 3744 138 95 2 chr11 39978302 39978998 -81864858 + Lx2 LINE L1 5550 6300 -697 6 890 299 302 327 18 chr11 39980975 39981317 -81862539 - Lx8 LINE L1 -4 7469 7023 6 890 393 109 0 0 chr11 39981558 39981622 -81862234 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 890 1213 281 70 32 chr11 39982087 39982274 -81861582 + MTC LTR MaLR 6 191 -230 6 890 327 104 0 0 chr11 39982274 39982322 -81861534 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 890 1213 281 70 32 chr11 39982322 39982535 -81861321 + MTC LTR MaLR 192 421 0 6 890 6290 41 0 5 chr11 39983202 39983967 -81859889 + L1Md_T LINE L1 5822 6582 0 6 890 493 385 86 41 chr11 39984306 39984818 -81859038 + MLT1K LTR MaLR 4 538 -57 6 890 481 193 15 0 chr11 39984928 39985063 -81858793 + (TA)n Simple_repeat Simple_repeat 1 137 0 6 890 1938 298 32 15 chr11 39986013 39986544 -81857312 + Lx8 LINE L1 6490 7029 -444 6 890 504 0 0 0 chr11 39986985 39987041 -81856815 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 890 518 300 54 0 chr11 39987044 39987174 -81856682 - RSINE1 SINE B4 -28 137 1 6 890 620 304 35 19 chr11 39987636 39987935 -81855921 - L1_Mur3 LINE L1 -703 5597 5293 6 890 3352 95 14 21 chr11 39988022 39988643 -81855213 - L1Md_F2 LINE L1 -1429 4457 3878 6 890 8845 71 1 0 chr11 39988641 39989796 -81854060 + L1Md_F2 LINE L1 4430 5585 -298 6 890 7793 63 0 4 chr11 39989797 39990797 -81853059 + L1Md_F2 LINE L1 5587 6582 0 6 890 644 139 10 0 chr11 39990973 39991074 -81852782 - B1_Mus2 SINE Alu -5 142 41 6 890 467 223 207 0 chr11 39991292 39991413 -81852443 + B1_Mus1 SINE Alu 2 147 -1 6 890 598 282 5 91 chr11 39992014 39992213 -81851643 + B3A SINE B2 1 182 -16 6 890 402 149 0 0 chr11 39992214 39992301 -81851555 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 890 28 0 0 0 chr11 39993603 39993631 -81850225 + AT_rich Low_complexity Low_complexity 1 28 0 6 890 532 264 38 102 chr11 39994164 39994400 -81849456 - MTEa LTR MaLR -158 221 1 6 890 333 276 95 20 chr11 39994418 39994566 -81849290 + MLT1G3 LTR MaLR 430 588 -7 6 890 511 268 12 144 chr11 39994865 39995122 -81848734 + Lx LINE L1 6411 6633 -21 6 890 699 12 0 0 chr11 39995963 39996043 -81847813 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 6 890 790 296 92 8 chr11 39996289 39996551 -81847305 - B4 SINE B4 -6 286 3 6 890 1578 268 115 14 chr11 39996850 39997365 -81846491 + Lx8 LINE L1 6230 6796 -677 6 890 14227 73 24 11 chr11 39997370 40000000 -81843856 - L1Md_F2 LINE L1 -12 6570 3930 6 890 11198 190 78 12 chr11 40000002 40000168 -81843688 - L1Md_F LINE L1 -1956 3921 3761 1 890 3368 28 5 2 chr11 40000168 40000563 -81843293 - MTA_Mm LTR MaLR 0 396 1 2 890 12850 151 86 17 chr11 40000563 40003857 -81839999 - L1Md_F LINE L1 -2117 3760 217 1 890 210 71 0 0 chr11 40004760 40004788 -81839068 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 890 276 241 38 138 chr11 40004938 40005013 -81838843 - L5 LINE RTE -22 2243 2172 4 890 1102 90 0 0 chr11 40005013 40005158 -81838698 + B1_Mus1 SINE Alu 1 145 -3 5 890 276 241 38 138 chr11 40005158 40005241 -81838615 - L5 LINE RTE -94 2171 2101 4 890 207 0 0 0 chr11 40005742 40005765 -81838091 + (ATG)n Simple_repeat Simple_repeat 2 24 0 6 890 527 276 72 62 chr11 40006238 40006447 -81837409 + B3 SINE B2 1 211 -5 7 890 1360 323 64 15 chr11 40007071 40007615 -81836241 - Lx8 LINE L1 -667 6806 6236 8 890 1115 339 39 4 chr11 40008332 40008791 -81835065 - RMER15-int LTR ERVL -3433 1566 1092 9 890 620 303 38 0 chr11 40008946 40009131 -81834725 - RMER15-int LTR ERVL -4109 890 699 9 890 3680 189 26 29 chr11 40009719 40010543 -81833313 - Lx4B LINE L1 -108 6950 6096 1 890 383 191 0 0 chr11 40010552 40010615 -81833241 + 7SK RNA RNA 9 71 -260 1 890 254 333 35 0 chr11 40010949 40011036 -81832820 - B1F1 SINE Alu -59 90 1 1 890 497 277 71 0 chr11 40012335 40012476 -81831380 + ID_B1 SINE B4 1 151 -73 1 890 1380 245 37 26 chr11 40012490 40012872 -81830984 + Lx7 LINE L1 7047 7432 -264 1 890 380 261 38 8 chr11 40012934 40013065 -81830791 + Lx7 LINE L1 7558 7692 -4 1 890 291 351 34 26 chr11 40014985 40015102 -81828754 - B1F2 SINE Alu -31 118 1 1 890 565 278 101 41 chr11 40015389 40015734 -81828122 + L1MB7 LINE L1 5571 5936 -248 1 890 340 342 55 18 chr11 40016138 40016302 -81827554 - B4A SINE B4 -1 291 122 1 890 2659 168 50 23 chr11 40016338 40016894 -81826962 - RMER6C LTR ERVK -8 682 112 1 890 254 343 19 47 chr11 40016907 40017014 -81826842 - B4A SINE B4 -182 110 7 1 890 198 0 0 0 chr11 40017132 40017154 -81826702 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 890 487 278 216 20 chr11 40017171 40017476 -81826380 + L1MA9 LINE L1 5798 6162 -150 2 890 1390 221 28 3 chr11 40018400 40018690 -81825166 - MTC LTR MaLR -2 419 123 2 890 1264 226 55 13 chr11 40018690 40019000 -81824856 + Lx7 LINE L1 7371 7693 -3 2 890 419 270 8 50 chr11 40019009 40019130 -81824726 - MTC LTR MaLR -301 120 5 2 890 1025 249 141 116 chr11 40020765 40021283 -81822573 + MT2A LTR ERVL 1 531 -2 2 890 236 389 0 7 chr11 40022336 40022481 -81821375 + GA-rich Low_complexity Low_complexity 3 146 0 2 890 598 273 56 62 chr11 40022528 40022700 -81821156 + Lx7 LINE L1 5589 5759 -1937 2 890 240 35 0 0 chr11 40022700 40022729 -81821127 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 890 598 273 56 62 chr11 40022729 40022799 -81821057 + Lx7 LINE L1 5760 5828 -1868 2 890 230 56 28 0 chr11 40022799 40022835 -81821021 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 890 598 273 56 62 chr11 40022835 40022911 -81820945 + Lx7 LINE L1 5829 5906 -1790 2 890 5249 153 18 3 chr11 40022911 40023942 -81819914 + L1_Mm LINE L1 4766 5872 -14 2 890 3958 32 0 0 chr11 40023942 40024406 -81819450 + L1Md_T LINE L1 6119 6582 0 2 890 5141 87 4 6 chr11 40024402 40025108 -81818748 + L1_Mus1 LINE L1 5862 6566 -1 3 890 26 50 0 0 chr11 40025255 40025295 -81818561 + AT_rich Low_complexity Low_complexity 1 40 0 3 890 232 308 45 83 chr11 40025381 40025537 -81818319 - RMER21B LTR ERV1 -178 664 515 3 890 1528 145 179 13 chr11 40025459 40025767 -81818089 - ORR1B2 LTR MaLR -8 359 1 3 890 674 300 100 53 chr11 40025773 40026093 -81817763 + Lx8 LINE L1 6368 6702 -771 3 890 316 375 15 0 chr11 40026112 40026248 -81817608 + Lx8 LINE L1 6780 6917 -556 3 890 220 156 45 45 chr11 40026542 40026609 -81817247 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 890 266 150 350 0 chr11 40026966 40027046 -81816810 - RMER15 LTR ERVL -92 483 376 3 890 536 358 89 54 chr11 40027223 40027536 -81816320 + MTEa LTR MaLR 1 324 -55 3 890 370 319 0 89 chr11 40027535 40027682 -81816174 + ORR1D2-int LTR MaLR 49 181 -1399 3 890 1824 167 58 103 chr11 40027682 40028060 -81815796 + RMER4A LTR ERVK 1 357 -109 3 890 578 14 14 0 chr11 40028060 40028131 -81815725 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 890 1824 167 58 103 chr11 40028131 40028179 -81815677 + RMER4A LTR ERVK 358 408 -58 3 890 895 363 121 60 chr11 40028169 40028249 -81815607 + ORR1D2-int LTR MaLR 249 319 -1261 3 890 4836 135 42 9 chr11 40028249 40028359 -81815497 - Lx2B LINE L1 -7 6993 6882 4 890 369 0 0 0 chr11 40028359 40028400 -81815456 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 890 4836 135 42 9 chr11 40028400 40029101 -81814755 - Lx2B LINE L1 -119 6881 6157 4 890 895 363 121 60 chr11 40029101 40029753 -81814103 + ORR1D2-int LTR MaLR 320 1015 -565 3 890 266 0 29 0 chr11 40029753 40029787 -81814069 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 890 895 372 105 54 chr11 40029787 40029909 -81813947 + ORR1D2-int LTR MaLR 889 1117 -463 3 890 469 303 44 132 chr11 40029911 40029950 -81813906 - MTEa LTR MaLR -171 208 178 4 890 3384 135 15 101 chr11 40029950 40030772 -81813084 - RMER17A LTR ERVK 0 751 1 4 890 469 303 44 132 chr11 40030772 40030960 -81812896 - MTEa LTR MaLR -202 177 1 4 890 505 206 147 49 chr11 40030964 40031127 -81812729 + ORR1D2 LTR MaLR 192 370 0 3 890 25 0 0 0 chr11 40032538 40032563 -81811293 + AT_rich Low_complexity Low_complexity 1 25 0 4 890 7457 62 9 1 chr11 40033052 40034011 -81809845 - L1_Mus2 LINE L1 0 6566 5600 4 890 454 350 36 69 chr11 40034744 40035210 -81808646 - L1MC4 LINE L1 -465 7577 7127 4 890 1170 297 57 21 chr11 40035434 40035908 -81807948 + RMER5 LTR ERV1 33 523 -11 4 890 208 250 0 0 chr11 40035910 40035958 -81807898 + (ATG)n Simple_repeat Simple_repeat 3 50 0 5 890 276 378 11 0 chr11 40036229 40036319 -81807537 + L2 LINE L2 2155 2245 -1174 5 890 1823 42 4 17 chr11 40036572 40036813 -81807043 + L1Md_F2 LINE L1 6344 6581 -1 5 890 645 58 0 0 chr11 40036990 40037076 -81806780 + (TG)n Simple_repeat Simple_repeat 2 87 0 5 890 221 284 14 0 chr11 40037082 40037156 -81806700 + GA-rich Low_complexity Low_complexity 1 75 0 5 890 738 314 62 20 chr11 40037184 40037525 -81806331 - MLT2B4 LTR ERVL -196 360 6 5 890 1107 51 15 0 chr11 40038031 40038168 -81805688 - B1_Mm SINE Alu -7 140 2 5 890 3569 50 0 5 chr11 40038291 40038736 -81805120 - L1Md_F2 LINE L1 -13 6569 6127 5 890 207 69 0 0 chr11 40038965 40038994 -81804862 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 890 2834 225 27 12 chr11 40039010 40039595 -81804261 - Lx5 LINE L1 -9 7041 6448 5 890 213 65 0 0 chr11 40039627 40039658 -81804198 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 890 405 0 0 0 chr11 40039715 40039760 -81804096 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 890 252 213 26 13 chr11 40039760 40039836 -81804020 + CT-rich Low_complexity Low_complexity 1 77 0 6 890 576 111 0 0 chr11 40042353 40042443 -81801413 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 890 513 317 98 39 chr11 40042460 40042716 -81801140 - B4 SINE B4 -21 271 1 6 890 344 329 75 27 chr11 40043452 40043599 -81800257 - RMER15 LTR ERVL -155 420 267 6 890 509 246 108 65 chr11 40043795 40043900 -81799956 - L1M3 LINE L1 -1395 4745 4632 6 890 357 24 0 0 chr11 40043900 40043942 -81799914 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 6 890 509 246 108 65 chr11 40043942 40044236 -81799620 - L1M3 LINE L1 -1509 4631 4329 6 890 41142 5 0 0 chr11 40044209 40050772 -81793084 - L1Md_A LINE L1 0 6582 20 6 890 459 228 0 0 chr11 40051763 40051886 -81791970 + (TA)n Simple_repeat Simple_repeat 1 123 0 6 890 3890 307 67 47 chr11 40052020 40053274 -81790582 - Cheshire DNA MER1_type -143 2277 1004 7 890 191 36 36 0 chr11 40053274 40053302 -81790554 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 7 890 3890 307 67 47 chr11 40053302 40053833 -81790023 - Cheshire DNA MER1_type -1417 1003 457 7 890 483 328 106 25 chr11 40053836 40054212 -81789644 - MLT1D LTR MaLR 0 505 64 7 890 363 348 112 26 chr11 40054269 40054502 -81789354 - Cheshire DNA MER1_type -1986 434 182 7 890 500 288 7 41 chr11 40054694 40054839 -81789017 + B4 SINE B4 66 205 -87 7 890 447 19 0 0 chr11 40054840 40054892 -81788964 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 890 429 104 0 0 chr11 40054892 40054969 -81788887 + (GA)n Simple_repeat Simple_repeat 1 77 0 7 890 536 237 0 0 chr11 40055003 40055121 -81788735 - Lx5 LINE L1 -3 7047 6930 7 890 1299 184 0 0 chr11 40055124 40055347 -81788509 + Lx5 LINE L1 5825 6047 -1003 7 890 4145 189 70 25 chr11 40055345 40056337 -81787519 - L1_Mur2 LINE L1 -262 5615 4565 7 890 36292 46 0 3 chr11 40056337 40063006 -81780850 - L1Md_T LINE L1 0 6585 1 7 890 1239 121 5 0 chr11 40062999 40063197 -81780659 - L1_Mur2 LINE L1 -1299 4578 4380 7 890 6161 136 27 22 chr11 40063195 40063516 -81780340 + L1_Mur2 LINE L1 3148 3471 -2406 8 890 207 0 0 0 chr11 40063516 40063539 -81780317 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 890 6161 136 27 22 chr11 40063539 40064439 -81779417 + L1_Mur2 LINE L1 3472 4374 -1503 8 890 896 304 35 38 chr11 40064536 40064851 -81779005 + ORR1E LTR MaLR 41 354 -5 8 890 1049 171 92 10 chr11 40065317 40065524 -81778332 - URR1B DNA MER1_type -1 224 1 8 890 486 0 0 0 chr11 40066433 40066487 -81777369 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 890 2650 78 100 21 chr11 40066508 40066927 -81776929 - RLTR44E LTR ERVK 0 452 1 8 890 714 175 6 11 chr11 40067072 40067251 -81776605 + CT-rich Low_complexity Low_complexity 3 180 0 8 890 5032 148 30 90 chr11 40067452 40068537 -81775319 - Lx LINE L1 0 6654 5636 8 890 9220 115 35 6 chr11 40068534 40069033 -81774823 - L1VL1 LINE L1 -1091 2607 2108 8 890 180 0 0 0 chr11 40069033 40069053 -81774803 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 890 9220 133 37 21 chr11 40069053 40070668 -81773188 - L1VL1 LINE L1 -1591 2107 408 8 890 2902 79 13 8 chr11 40070668 40071062 -81772794 - MTA_Mm LTR MaLR 0 396 1 9 890 4955 169 42 51 chr11 40071062 40071159 -81772697 - L1VL1 LINE L1 -6015 407 318 8 890 311 0 0 25 chr11 40071159 40071199 -81772657 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 890 4955 169 42 51 chr11 40071199 40071503 -81772353 - L1VL1 LINE L1 -6105 317 55 8 890 26 0 0 0 chr11 40071900 40071926 -81771930 + AT_rich Low_complexity Low_complexity 1 26 0 9 890 456 62 0 0 chr11 40072247 40072311 -81771545 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 890 414 0 0 0 chr11 40072311 40072357 -81771499 + (GA)n Simple_repeat Simple_repeat 2 47 0 9 890 23 33 0 0 chr11 40072513 40072543 -81771313 + AT_rich Low_complexity Low_complexity 1 30 0 9 890 725 336 43 97 chr11 40073154 40073748 -81770108 - MER44B DNA MER2_type -12 538 1 9 890 480 18 0 0 chr11 40073960 40074017 -81769839 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 890 430 247 30 18 chr11 40074304 40074469 -81769387 - L1MD LINE L1 -974 5172 5006 9 890 2802 213 43 3 chr11 40074595 40075197 -81768659 + Lx5 LINE L1 6409 7034 -16 9 890 949 101 0 0 chr11 40075201 40075339 -81768517 + L1_Mus2 LINE L1 6423 6560 -6 1 890 22 0 0 0 chr11 40075339 40075361 -81768495 + AT_rich Low_complexity Low_complexity 1 22 0 1 890 2890 291 43 19 chr11 40076028 40076977 -81766879 - RCHARR1 DNA MER1_type 0 974 3 1 890 2003 226 71 2 chr11 40077201 40077267 -81766589 + Lx6 LINE L1 6819 6886 -574 1 890 1220 86 6 0 chr11 40077267 40077442 -81766414 + (AGGGGG)n Simple_repeat Simple_repeat 1 176 0 1 890 2003 226 71 2 chr11 40077442 40077840 -81766016 + Lx6 LINE L1 6887 7314 -146 1 890 256 247 0 11 chr11 40077853 40077943 -81765913 + Lx6 LINE L1 7362 7450 -10 1 890 225 108 0 0 chr11 40077972 40078009 -81765847 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 890 324 120 0 0 chr11 40078000 40078050 -81765806 + (GGA)n Simple_repeat Simple_repeat 2 51 0 1 890 333 0 0 0 chr11 40078382 40078419 -81765437 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 890 1119 260 77 55 chr11 40080271 40080637 -81763219 + MTE2b LTR MaLR 1 374 -5 1 890 22 0 0 0 chr11 40081265 40081287 -81762569 + AT_rich Low_complexity Low_complexity 1 22 0 1 890 438 20 0 0 chr11 40081289 40081340 -81762516 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 890 7293 71 0 0 chr11 40081340 40082542 -81761314 - L1_Mus1 LINE L1 -30 6537 5335 1 890 2784 64 53 11 chr11 40083355 40083735 -81760121 - MTA_Mm LTR MaLR 0 396 1 1 890 7984 66 25 3 chr11 40083735 40084809 -81759047 - MTA_Mm-int LTR MaLR 0 1098 1 1 890 3417 54 77 0 chr11 40084811 40085252 -81758604 - MT2C_Mm LTR ERVL 0 475 1 1 890 21 36 0 0 chr11 40085447 40085475 -81758381 + AT_rich Low_complexity Low_complexity 1 28 0 1 890 554 277 118 7 chr11 40085644 40086035 -81757821 + L1MA6 LINE L1 5853 6300 0 1 890 514 360 16 40 chr11 40087477 40087729 -81756127 + B4A SINE B4 27 272 -20 1 890 276 53 0 0 chr11 40087743 40087781 -81756075 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 890 198 103 0 0 chr11 40087810 40087839 -81756017 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 890 584 316 78 19 chr11 40089020 40089288 -81754568 + B4A SINE B4 2 285 -7 1 890 261 0 0 0 chr11 40089291 40089320 -81754536 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 890 281 308 48 9 chr11 40091635 40091740 -81752116 - PB1D10 SINE Alu -7 110 2 1 890 268 159 0 0 chr11 40092066 40092110 -81751746 - L1_Mus4 LINE L1 -159 6477 6434 1 890 710 140 7 7 chr11 40092111 40092248 -81751608 + L1_Mus4 LINE L1 6500 6636 0 1 890 892 293 15 0 chr11 40093489 40093762 -81750094 + Lx8 LINE L1 6263 6539 -934 1 890 1708 215 57 49 chr11 40093763 40094169 -81749687 + MTC LTR MaLR 5 413 -8 1 890 230 237 0 13 chr11 40094367 40094444 -81749412 + A-rich Low_complexity Low_complexity 1 76 0 1 890 438 69 0 0 chr11 40094432 40094490 -81749366 + (GGGGA)n Simple_repeat Simple_repeat 5 62 0 1 890 496 170 271 29 chr11 40094539 40094709 -81749147 + B3 SINE B2 2 212 -4 1 890 270 268 11 68 chr11 40094859 40094947 -81748909 + B4A SINE B4 210 292 0 1 890 347 332 114 12 chr11 40095286 40095627 -81748229 - Lx8 LINE L1 -58 7415 7040 1 890 545 291 65 18 chr11 40095685 40095908 -81747948 - Lx8 LINE L1 -724 6749 6514 1 890 205 264 0 0 chr11 40096090 40096143 -81747713 + A-rich Low_complexity Low_complexity 3 55 0 1 890 471 18 0 0 chr11 40096279 40096335 -81747521 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 890 2461 219 30 92 chr11 40096339 40097006 -81746850 + RMER20B LTR ERVK 1 626 -1 1 890 278 259 25 0 chr11 40097102 40097183 -81746673 + Lx8 LINE L1 6299 6381 -1092 1 890 241 328 0 0 chr11 40097408 40097466 -81746390 + tRNA-Ala-GCY_ tRNA tRNA 1 58 -17 1 890 214 410 0 0 chr11 40097466 40097507 -81746349 + BC1_Mm scRNA scRNA 12 105 -47 1 890 1211 61 0 0 chr11 40098164 40098311 -81745545 + B1_Mm SINE Alu 1 147 0 1 890 189 0 0 0 chr11 40098312 40098333 -81745523 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1 890 244 293 107 0 chr11 40098439 40098514 -81745342 + ID4_ SINE ID 1 83 0 1 890 273 294 78 10 chr11 40098909 40099012 -81744844 - MLT1A1 LTR MaLR 0 505 396 1 890 268 376 21 0 chr11 40099636 40099729 -81744127 - B4A SINE B4 -197 95 1 1 890 458 299 67 62 chr11 40100527 40100705 -81743151 - MLT1A1 LTR MaLR -42 366 188 1 890 511 126 21 0 chr11 40100705 40100800 -81743056 + (TC)n Simple_repeat Simple_repeat 1 97 0 1 890 309 135 0 0 chr11 40100799 40100851 -81743005 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 890 26 30 0 0 chr11 40100879 40100912 -81742944 + AT_rich Low_complexity Low_complexity 1 33 0 1 890 3128 92 9 9 chr11 40101206 40101664 -81742192 + Lx3_Mus LINE L1 6551 7008 -1 1 890 301 280 147 50 chr11 40101939 40102259 -81741597 - L1MC4 LINE L1 -208 7834 7484 1 890 348 357 18 18 chr11 40102439 40102713 -81741143 - L1MC2 LINE L1 -32 6487 6214 1 890 532 319 33 74 chr11 40102812 40103233 -81740623 - L1MC2 LINE L1 -693 5926 5523 1 890 762 298 135 23 chr11 40103377 40103895 -81739961 - L1MC2 LINE L1 -5932 576 1 1 890 210 71 0 0 chr11 40105185 40105213 -81738643 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 890 261 0 0 0 chr11 40105320 40105349 -81738507 + (T)n Simple_repeat Simple_repeat 1 29 0 1 890 647 236 14 27 chr11 40105349 40105497 -81738359 - B1_Mus2 SINE Alu 0 147 2 1 890 615 268 125 24 chr11 40106144 40106473 -81737383 + MLT1A0 LTR MaLR 2 363 -2 1 890 226 290 0 115 chr11 40106572 40106650 -81737206 + ID4_ SINE ID 1 69 -14 1 890 336 48 0 0 chr11 40106650 40106692 -81737164 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 890 231 114 0 0 chr11 40107222 40107257 -81736599 + (GAA)n Simple_repeat Simple_repeat 2 36 0 1 891 465 177 209 34 chr11 40108182 40108310 -81735546 + RMER10B LTR ERVL 1 122 -276 1 891 287 58 143 71 chr11 40108286 40108342 -81735514 + RMER10B LTR ERVL 333 392 -6 1 891 181 302 72 10 chr11 40108349 40108446 -81735410 - MER5A DNA MER1_type -80 109 7 1 891 324 0 0 0 chr11 40110469 40110505 -81733351 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 891 927 174 0 0 chr11 40111625 40111803 -81732053 + CT-rich Low_complexity Low_complexity 1 178 0 1 891 222 118 0 0 chr11 40113125 40113159 -81730697 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 891 234 200 65 26 chr11 40113279 40113356 -81730500 - L1ME3 LINE L1 -138 6024 5945 1 891 4732 51 3 3 chr11 40113472 40114059 -81729797 - LTRIS_Mus LTR ERV1 0 587 1 1 891 510 114 0 0 chr11 40114170 40114249 -81729607 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 891 2032 161 80 13 chr11 40114251 40114641 -81729215 + MTC LTR MaLR 6 421 0 1 891 207 0 0 0 chr11 40115177 40115200 -81728656 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 891 351 0 0 0 chr11 40115200 40115238 -81728618 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 891 416 221 40 153 chr11 40115274 40115450 -81728406 - B3 SINE B2 -9 186 31 1 891 443 352 91 11 chr11 40115811 40116087 -81727769 + RMER15 LTR ERVL 278 575 0 1 891 184 304 43 14 chr11 40116726 40116796 -81727060 + MIRb SINE MIR 94 165 -103 1 891 527 252 213 0 chr11 40118122 40118251 -81725605 + Lx9 LINE L1 7330 7487 -157 1 891 309 51 0 0 chr11 40118251 40118290 -81725566 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 1 891 527 252 213 0 chr11 40118290 40118414 -81725442 + Lx9 LINE L1 7488 7636 -8 1 891 419 298 112 71 chr11 40118431 40118601 -81725255 - B3 SINE B2 -39 177 1 1 891 232 121 224 0 chr11 40118970 40119028 -81724828 - Charlie8 DNA MER1_type -726 1702 1632 1 891 498 312 77 14 chr11 40120024 40120167 -81723689 - B4 SINE B4 -23 269 118 1 891 498 186 78 0 chr11 40120535 40120637 -81723219 + B1_Mus1 SINE Alu 39 148 0 1 891 191 256 0 0 chr11 40120800 40120839 -81723017 - MIR SINE MIR -14 248 210 1 891 234 295 158 18 chr11 40121089 40121203 -81722653 + MLT1H1 LTR MaLR 76 205 -350 1 891 764 353 115 33 chr11 40121247 40121760 -81722096 + MLT1F2 LTR MaLR 1 555 -5 1 891 300 318 76 151 chr11 40121865 40122169 -81721687 + ORR1E LTR MaLR 19 299 -60 1 891 233 333 14 0 chr11 40122364 40122436 -81721420 - L2a LINE L2 -261 3165 3093 1 891 1185 112 32 5 chr11 40122459 40122647 -81721209 + B2_Mm2 SINE B2 1 193 -2 1 891 204 238 0 0 chr11 40122647 40122710 -81721146 + GA-rich Low_complexity Low_complexity 1 63 0 1 891 195 377 76 42 chr11 40123640 40123784 -81720072 + MIR SINE MIR 88 236 -26 1 891 788 216 0 7 chr11 40124260 40124409 -81719447 + B1_Mus1 SINE Alu 1 148 0 1 891 965 311 63 12 chr11 40124620 40125050 -81718806 - Lx8 LINE L1 -216 7257 6806 1 891 415 276 106 0 chr11 40125091 40125214 -81718642 - MTE2a LTR MaLR -243 136 1 1 891 597 277 168 0 chr11 40125215 40125453 -81718403 - Lx9 LINE L1 -730 6914 6637 1 891 284 283 9 9 chr11 40125453 40125567 -81718289 + L1_Rod LINE L1 5674 5787 -60 1 891 26 50 0 0 chr11 40125978 40126018 -81717838 + AT_rich Low_complexity Low_complexity 1 40 0 1 891 441 103 0 0 chr11 40126989 40127057 -81716799 + (TATG)n Simple_repeat Simple_repeat 2 69 0 1 891 273 228 38 0 chr11 40127057 40127136 -81716720 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 891 944 267 71 38 chr11 40127669 40127864 -81715992 + L1VL2 LINE L1 317 523 -5835 1 891 207 0 0 0 chr11 40127864 40127887 -81715969 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 891 959 212 22 0 chr11 40127887 40128115 -81715741 + L1VL2 LINE L1 523 754 -5604 1 891 7193 148 10 129 chr11 40128112 40128508 -81715348 + Lx3C LINE L1 4325 4726 -1151 1 891 243 0 0 0 chr11 40128508 40128535 -81715321 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 891 7193 148 10 129 chr11 40128535 40128714 -81715142 + Lx3C LINE L1 4727 4906 -971 1 891 809 204 22 11 chr11 40128714 40128892 -81714964 + B2_Mm2 SINE B2 2 181 -14 1 891 7193 174 51 54 chr11 40128892 40130960 -81712896 + Lx3C LINE L1 4907 6865 -135 1 891 207 0 0 0 chr11 40130960 40130983 -81712873 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 1 891 4031 151 85 0 chr11 40130983 40131088 -81712768 + Lx3C LINE L1 6866 6999 -1 1 891 630 341 48 0 chr11 40133296 40133569 -81710287 + B4A SINE B4 3 288 -4 1 891 198 143 0 0 chr11 40134363 40134398 -81709458 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 891 281 297 59 10 chr11 40134539 40134641 -81709215 - MIR SINE MIR -91 171 65 1 891 2385 296 104 33 chr11 40136173 40137244 -81706612 + Lx8 LINE L1 6191 7337 -136 1 891 276 368 34 20 chr11 40137740 40137887 -81705969 - RSINE1 SINE B4 -14 151 3 2 891 204 40 0 0 chr11 40137891 40137916 -81705940 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 891 1182 286 21 14 chr11 40139644 40139931 -81703925 - B4 SINE B4 0 292 4 2 891 3066 89 6 7 chr11 40139989 40140680 -81703176 + Lx LINE L1 5421 6582 -56 2 891 4053 128 23 11 chr11 40140680 40141321 -81702535 + Lx LINE L1 5999 6647 -7 2 891 210 133 48 32 chr11 40141327 40141389 -81702467 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 891 784 284 44 5 chr11 40141392 40141643 -81702213 + Lx8 LINE L1 6970 7234 -410 2 891 253 321 98 27 chr11 40142085 40142197 -81701659 + MLT1H1-int LTR MaLR 1320 1439 -50 2 891 261 397 6 13 chr11 40142266 40142424 -81701432 + MLT1H1 LTR MaLR 27 183 -408 2 891 390 297 167 6 chr11 40142467 40142623 -81701233 + MLT1H1 LTR MaLR 280 460 -95 2 891 634 225 6 6 chr11 40142983 40143157 -81700699 + A-rich Low_complexity Low_complexity 2 175 0 2 891 571 194 71 43 chr11 40143208 40143348 -81700508 + B1_Mm SINE Alu 3 146 -1 2 891 214 254 0 0 chr11 40143452 40143519 -81700337 + A-rich Low_complexity Low_complexity 1 67 0 2 891 5366 81 1 0 chr11 40144334 40145039 -81698817 + L1_Mus2 LINE L1 5859 6564 -2 2 891 198 71 0 0 chr11 40145556 40145584 -81698272 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 891 6055 58 11 1 chr11 40146043 40146849 -81697007 + L1Md_F2 LINE L1 4773 5586 -297 2 891 8141 47 0 8 chr11 40146849 40147853 -81696003 + L1Md_F2 LINE L1 5587 6582 0 2 891 664 288 155 55 chr11 40148040 40148349 -81695507 - ORR1D2 LTR MaLR -30 340 1 2 891 588 14 0 0 chr11 40148404 40148473 -81695383 + (GA)n Simple_repeat Simple_repeat 1 69 0 2 891 310 289 73 45 chr11 40148522 40148808 -81695048 + L1M5 LINE L1 5545 5838 -324 2 891 396 314 93 90 chr11 40149168 40149282 -81694574 - MLT1A LTR MaLR -13 361 236 2 891 3131 58 2 8 chr11 40149282 40149680 -81694176 + MTA_Mm LTR MaLR 1 396 0 2 891 396 314 93 90 chr11 40149680 40149876 -81693980 - MLT1A LTR MaLR -139 235 50 2 891 786 206 0 0 chr11 40149882 40150018 -81693838 + B1_Mur3 SINE Alu 1 136 -13 2 891 216 0 0 0 chr11 40150018 40150042 -81693814 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 891 39 0 0 0 chr11 40150069 40150108 -81693748 + AT_rich Low_complexity Low_complexity 1 39 0 2 891 2482 231 76 12 chr11 40150108 40150792 -81693064 - Lx7 LINE L1 -335 7361 6634 2 891 2046 202 62 16 chr11 40150792 40151240 -81692616 - RLTR16 LTR ERVK 0 505 37 2 891 24 0 0 0 chr11 40151253 40151277 -81692579 + AT_rich Low_complexity Low_complexity 1 24 0 2 891 1240 167 70 64 chr11 40151341 40151654 -81692202 + Lx7 LINE L1 7382 7696 0 2 891 480 328 49 15 chr11 40152054 40152258 -81691598 - MER58A DNA MER1_type -3 221 11 2 891 24 67 0 0 chr11 40152353 40152398 -81691458 + AT_rich Low_complexity Low_complexity 1 45 0 2 891 275 100 0 16 chr11 40152471 40152532 -81691324 + L1Md_F2 LINE L1 6523 6582 0 2 891 810 179 6 62 chr11 40152546 40152725 -81691131 + RMER12 LTR ERVK 599 767 -555 2 891 207 0 0 0 chr11 40152730 40152753 -81691103 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 891 1211 293 53 41 chr11 40152792 40153312 -81690544 - Lx6 LINE L1 -29 7431 6543 2 891 1139 74 0 13 chr11 40153372 40153386 -81690470 - B1_Mus1 SINE Alu 0 148 136 2 891 261 0 0 0 chr11 40153386 40153415 -81690441 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 891 1139 74 0 13 chr11 40153415 40153550 -81690306 - B1_Mus1 SINE Alu -13 135 1 2 891 347 305 86 0 chr11 40154244 40154372 -81689484 - MER2 DNA MER2_type -53 292 154 2 891 4159 60 0 0 chr11 40154503 40155018 -81688838 - L1_Mus1 LINE L1 0 6567 6053 2 891 552 297 145 45 chr11 40155028 40155560 -81688296 - BLACKJACK DNA AcHobo -684 2260 1676 2 891 39413 8 0 1 chr11 40155637 40162837 -81681019 - L1Md_A LINE L1 0 6582 1 2 891 1137 344 87 39 chr11 40162899 40163941 -81679915 - BLACKJACK DNA AcHobo -1392 1552 461 2 891 256 294 57 43 chr11 40164680 40164890 -81678966 + L1MC LINE L1 5359 5571 -2214 2 891 391 221 47 0 chr11 40164949 40165035 -81678821 - U1 snRNA snRNA -71 94 5 2 891 203 229 16 0 chr11 40165315 40165376 -81678480 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 2 891 343 387 57 10 chr11 40165420 40165613 -81678243 + L1ME1 LINE L1 5965 6166 -13 2 891 891 142 0 0 chr11 40165689 40165837 -81678019 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 2 891 303 347 96 46 chr11 40166194 40166475 -81677381 - MER74B LTR ERVL 0 622 328 2 891 217 317 144 41 chr11 40167595 40167789 -81676067 - MIRb SINE MIR -36 232 19 2 891 21 0 0 0 chr11 40168515 40168536 -81675320 + AT_rich Low_complexity Low_complexity 1 21 0 2 891 468 276 35 103 chr11 40169923 40170097 -81673759 + MLT1E2 LTR MaLR 1 162 -465 2 891 336 209 52 43 chr11 40170133 40170248 -81673608 + MLT1E2 LTR MaLR 382 497 -8 2 891 343 312 35 44 chr11 40170279 40170507 -81673349 + MLT1E2-int LTR MaLR 64 289 -1082 2 891 289 252 62 9 chr11 40170895 40171007 -81672849 + L1MC2 LINE L1 5849 5966 -378 2 891 678 127 42 0 chr11 40171191 40171309 -81672547 + L1_Mur1 LINE L1 4967 5089 -797 2 891 3357 38 5 0 chr11 40171309 40171703 -81672153 - MTA_Mm LTR MaLR 0 396 1 2 891 8655 41 0 1 chr11 40171704 40172786 -81671070 - MTA_Mm-int LTR MaLR -17 1081 1 2 891 3324 43 5 0 chr11 40172786 40173180 -81670676 - MTA_Mm LTR MaLR 0 396 1 2 891 3023 98 0 0 chr11 40173180 40173619 -81670237 + L1_Mm LINE L1 5082 5520 -363 2 891 344 305 66 78 chr11 40173742 40173984 -81669872 + L1ME3B LINE L1 5734 5972 -268 2 891 1174 255 68 6 chr11 40174030 40174385 -81669471 - MTE2b LTR MaLR 0 379 3 2 891 361 253 0 25 chr11 40174952 40175033 -81668823 + B4A SINE B4 36 114 -178 2 891 243 307 121 17 chr11 40177302 40177418 -81666438 - L2 LINE L2 -563 2856 2729 2 891 209 111 0 43 chr11 40177548 40177595 -81666261 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 2 891 502 15 0 29 chr11 40177601 40177670 -81666186 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 891 1262 124 0 5 chr11 40177743 40177929 -81665927 + B2_Mm2 SINE B2 2 186 -9 2 891 680 286 27 5 chr11 40178008 40178194 -81665662 - B3 SINE B2 0 216 27 2 891 315 96 0 0 chr11 40178194 40178246 -81665610 + (T)n Simple_repeat Simple_repeat 1 52 0 2 891 269 47 0 0 chr11 40178319 40178362 -81665494 - L1Md_T LINE L1 0 6582 6540 2 891 424 361 215 13 chr11 40178408 40179416 -81664440 - L2 LINE L2 -940 2479 1268 2 891 475 352 82 18 chr11 40180009 40180339 -81663517 - L2 LINE L2 -2357 1062 712 2 891 211 200 0 0 chr11 40180357 40180402 -81663454 + GA-rich Low_complexity Low_complexity 2 46 0 2 891 487 269 8 15 chr11 40181094 40181226 -81662630 - L2c LINE L2 -1 3386 3256 2 891 888 118 96 0 chr11 40182312 40182447 -81661409 + B1_Mus1 SINE Alu 1 148 0 2 891 456 19 0 0 chr11 40182468 40182521 -81661335 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 2 891 279 203 11 0 chr11 40182557 40182671 -81661185 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 891 180 0 0 0 chr11 40182671 40182690 -81661166 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 891 215 304 0 50 chr11 40182690 40182730 -81661126 + (CATA)n Simple_repeat Simple_repeat 1 35 0 2 891 336 319 32 51 chr11 40182914 40183225 -81660631 + L1ME1 LINE L1 5432 5736 -428 2 891 356 296 119 60 chr11 40183241 40183442 -81660414 + L1ME1 LINE L1 5787 5999 -180 2 891 264 269 54 71 chr11 40183674 40183786 -81660070 - MLT1A1 LTR MaLR -298 110 1 2 891 242 235 43 29 chr11 40183786 40183856 -81660000 - MER63D DNA AcHobo -140 921 851 2 891 337 369 101 0 chr11 40183990 40184158 -81659698 + B3A SINE B2 14 198 0 2 891 371 312 31 112 chr11 40184199 40184459 -81659397 - MER63D DNA AcHobo -525 536 298 2 891 248 284 78 10 chr11 40184572 40184675 -81659181 - MER63D DNA AcHobo -923 138 29 2 891 630 0 0 0 chr11 40185169 40185239 -81658617 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 2 891 1118 208 31 0 chr11 40185243 40185498 -81658358 - Lx5 LINE L1 -66 6984 6722 2 891 992 132 0 40 chr11 40185498 40185672 -81658184 + L1_Mur2 LINE L1 4131 4297 -1580 2 891 949 40 16 43 chr11 40186153 40186337 -81657519 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 891 375 141 0 0 chr11 40186355 40186419 -81657437 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 891 21 36 0 0 chr11 40186745 40186773 -81657083 + AT_rich Low_complexity Low_complexity 1 28 0 2 891 959 92 0 8 chr11 40187314 40187446 -81656410 + B1_Mus1 SINE Alu 1 131 -17 2 891 225 0 0 0 chr11 40187450 40187475 -81656381 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 891 202 139 23 0 chr11 40187475 40187518 -81656338 + A-rich Low_complexity Low_complexity 5 48 0 2 891 263 28 0 27 chr11 40187584 40187621 -81656235 + (TATAA)n Simple_repeat Simple_repeat 2 37 0 2 891 1261 64 23 0 chr11 40189241 40189635 -81654221 + (TAGA)n Simple_repeat Simple_repeat 1 403 0 2 891 1078 121 5 21 chr11 40190119 40190305 -81653551 - Lx LINE L1 -1 6653 6471 2 891 26 74 0 0 chr11 40190364 40190418 -81653438 + AT_rich Low_complexity Low_complexity 1 54 0 2 891 2241 160 29 2 chr11 40190420 40190834 -81653022 - Lx2 LINE L1 -1 6996 6572 2 891 510 0 0 41 chr11 40190899 40190972 -81652884 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 891 207 0 0 0 chr11 40190978 40191001 -81652855 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 2 891 1149 83 0 0 chr11 40191169 40191349 -81652507 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 891 206 188 0 40 chr11 40191350 40191400 -81652456 + CT-rich Low_complexity Low_complexity 6 53 0 2 891 318 238 112 6 chr11 40192292 40192453 -81651403 + Charlie5 DNA MER1_type 2337 2514 -110 2 891 285 264 65 65 chr11 40192506 40192599 -81651257 + RSINE1 SINE B4 61 153 -12 2 891 243 0 0 0 chr11 40192602 40192629 -81651227 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 891 243 0 0 0 chr11 40192630 40192657 -81651199 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 891 1377 96 25 42 chr11 40192766 40193006 -81650850 - Lx LINE L1 -8 6646 6411 2 891 450 0 0 0 chr11 40193368 40193418 -81650438 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 891 26 0 0 0 chr11 40193769 40193795 -81650061 + AT_rich Low_complexity Low_complexity 1 26 0 2 891 816 296 40 110 chr11 40194122 40194577 -81649279 - RLTR23 LTR ERV1 0 430 8 2 891 553 358 24 19 chr11 40195650 40195861 -81647995 - MLT1C LTR MaLR -3 464 253 2 891 184 297 24 98 chr11 40199325 40199407 -81644449 - L2c LINE L2 -62 3325 3250 2 891 240 59 0 0 chr11 40199759 40199793 -81644063 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 3 891 455 330 127 32 chr11 40199872 40200040 -81643816 - Lx8 LINE L1 -212 7261 7081 3 891 3168 32 0 0 chr11 40200040 40200413 -81643443 + L1Md_T LINE L1 6210 6582 0 3 891 455 330 127 32 chr11 40200413 40200591 -81643265 - Lx8 LINE L1 -393 7080 6882 3 891 22 56 0 0 chr11 40200603 40200639 -81643217 + AT_rich Low_complexity Low_complexity 1 36 0 3 891 1196 246 24 7 chr11 40200639 40200926 -81642930 - Lx6 LINE L1 -26 7434 7143 3 891 1749 213 53 41 chr11 40200929 40201418 -81642438 - Lx9 LINE L1 -8 7636 7142 3 891 2321 79 3 0 chr11 40201736 40202065 -81641791 - L1_Mus3 LINE L1 -464 6174 5845 3 891 2857 120 32 15 chr11 40202065 40202530 -81641326 + L1_Mus3 LINE L1 6164 6636 -2 3 891 27 0 0 0 chr11 40202738 40202765 -81641091 + AT_rich Low_complexity Low_complexity 1 27 0 3 891 483 295 13 39 chr11 40202778 40202933 -81640923 + ORR1E LTR MaLR 1 151 -208 3 891 303 305 126 30 chr11 40202949 40203084 -81640772 + ORR1E LTR MaLR 228 375 -4 3 891 522 46 0 0 chr11 40203094 40203159 -81640697 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 891 3766 86 0 2 chr11 40203199 40203699 -81640157 - L1_Mus2 LINE L1 -2 6564 6066 3 891 5183 36 0 60 chr11 40203730 40203823 -81640033 + L1Md_F2 LINE L1 4901 4993 -890 3 891 5306 51 0 9 chr11 40203823 40204492 -81639364 + L1Md_F2 LINE L1 5919 6581 -1 3 891 5183 36 0 60 chr11 40204492 40205128 -81638728 + L1Md_F2 LINE L1 4994 5586 -297 3 891 8104 36 4 16 chr11 40205128 40206136 -81637720 + L1Md_F2 LINE L1 5587 6582 0 3 891 204 209 29 29 chr11 40206209 40206278 -81637578 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 3 891 493 365 0 0 chr11 40206385 40206511 -81637345 + RSINE1 SINE B4 7 132 -33 3 891 216 0 0 0 chr11 40206521 40206545 -81637311 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 891 456 19 0 0 chr11 40209279 40209332 -81634524 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 891 242 257 30 144 chr11 40209504 40209636 -81634220 - PB1D10 SINE Alu 0 117 1 3 891 258 105 0 0 chr11 40209898 40209936 -81633920 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 891 228 380 0 0 chr11 40209942 40210013 -81633843 - ID2 SINE ID -4 79 9 3 891 1932 147 22 13 chr11 40210693 40211011 -81632845 - ORR1A4 LTR MaLR -8 321 1 3 891 327 368 34 47 chr11 40211349 40211583 -81632273 + MIRb SINE MIR 28 258 -10 3 891 239 328 158 28 chr11 40212405 40212659 -81631197 + B4A SINE B4 2 288 -4 3 891 391 328 35 86 chr11 40213138 40213224 -81630632 + B3A SINE B2 11 96 -102 3 891 1232 70 58 12 chr11 40213224 40213397 -81630459 + B2_Mm2 SINE B2 1 181 -14 3 891 391 328 35 86 chr11 40213397 40213479 -81630377 + B3A SINE B2 97 165 -33 3 891 261 0 0 0 chr11 40213479 40213508 -81630348 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 891 391 328 35 86 chr11 40213508 40213535 -81630321 + B3A SINE B2 166 196 -2 3 891 408 125 9 28 chr11 40214215 40214322 -81629534 + (CATA)n Simple_repeat Simple_repeat 2 106 0 3 891 515 242 53 129 chr11 40214509 40214718 -81629138 - B2_Mm2 SINE B2 0 195 3 3 891 269 320 75 67 chr11 40215002 40215136 -81628720 - MLT1J1 LTR MaLR -113 331 197 3 891 798 287 15 0 chr11 40215465 40215667 -81628189 + B3 SINE B2 3 207 -9 3 891 236 77 26 0 chr11 40215704 40215743 -81628113 + (TTA)n Simple_repeat Simple_repeat 1 40 0 3 891 473 325 88 40 chr11 40216427 40216677 -81627179 + MTEa LTR MaLR 1 262 -117 3 891 692 313 82 98 chr11 40216445 40217004 -81626852 + MT2A LTR ERVL 20 544 -10 3 891 186 346 49 0 chr11 40217095 40217176 -81626680 + MIRb SINE MIR 98 182 -86 3 891 934 96 24 6 chr11 40217215 40217382 -81626474 + (TC)n Simple_repeat Simple_repeat 1 170 0 3 891 1212 49 0 0 chr11 40217908 40218052 -81625804 + B1_Mus2 SINE Alu 2 145 -2 3 891 427 268 46 61 chr11 40218061 40218192 -81625664 + RSINE1 SINE B4 2 130 -35 3 891 203 340 158 13 chr11 40218355 40218653 -81625203 + L2 LINE L2 2539 2879 -540 3 891 28 61 0 0 chr11 40220519 40220568 -81623288 + AT_rich Low_complexity Low_complexity 1 49 0 3 891 625 325 50 95 chr11 40220854 40221261 -81622595 - Lx8 LINE L1 -319 7154 6743 3 891 456 316 25 31 chr11 40221261 40221457 -81622399 + B3A SINE B2 4 198 0 3 891 625 325 50 95 chr11 40221457 40221607 -81622249 - Lx8 LINE L1 -731 6742 6622 3 891 183 114 0 0 chr11 40222325 40222360 -81621496 + (T)n Simple_repeat Simple_repeat 1 35 0 3 891 461 155 31 0 chr11 40223292 40223421 -81620435 + (TA)n Simple_repeat Simple_repeat 1 133 0 3 891 3658 104 72 9 chr11 40223469 40224039 -81619817 + Lx3_Mus LINE L1 6396 7001 -8 3 891 244 204 50 6 chr11 40224090 40224277 -81619579 + (TA)n Simple_repeat Simple_repeat 1 195 0 3 891 30 0 0 0 chr11 40224322 40224352 -81619504 + AT_rich Low_complexity Low_complexity 1 30 0 3 891 349 299 46 113 chr11 40224624 40224775 -81619081 - MLT1G3 LTR MaLR -36 559 419 3 891 475 376 41 6 chr11 40225214 40225385 -81618471 - B3A SINE B2 -16 182 6 3 891 213 260 0 144 chr11 40225730 40225820 -81618036 - L2c LINE L2 -22 3365 3289 3 891 1142 282 73 9 chr11 40225899 40226228 -81617628 - ORR1E LTR MaLR 0 359 10 3 891 3081 61 13 2 chr11 40226415 40226810 -81617046 - L1Md_F2 LINE L1 -15 6567 6169 3 891 1069 103 7 0 chr11 40226810 40226965 -81616891 + L1Md_F2 LINE L1 6033 6188 -394 3 891 36092 32 1 0 chr11 40226968 40234022 -81609834 - L1Md_T LINE L1 0 6585 1 3 891 27 62 0 0 chr11 40234954 40235002 -81608854 + AT_rich Low_complexity Low_complexity 1 48 0 3 891 1002 284 84 26 chr11 40235171 40235514 -81608342 + MTE2a LTR MaLR 15 377 -2 3 891 190 56 27 27 chr11 40235995 40236032 -81607824 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3 891 342 0 0 0 chr11 40238174 40238212 -81605644 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 3 891 587 265 59 29 chr11 40238773 40238909 -81604947 + RSINE1 SINE B4 4 143 -22 3 891 288 0 0 0 chr11 40238912 40238944 -81604912 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 892 207 133 0 0 chr11 40239147 40239192 -81604664 + (A)n Simple_repeat Simple_repeat 1 45 0 3 892 481 345 97 47 chr11 40239796 40239872 -81603984 + MLT1C LTR MaLR 1 69 -398 3 892 2132 178 15 5 chr11 40239872 40240261 -81603595 + ORR1B1 LTR MaLR 2 394 0 3 892 481 345 97 47 chr11 40240261 40240588 -81603268 + MLT1C LTR MaLR 70 424 -43 3 892 360 0 0 0 chr11 40244102 40244142 -81599714 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 892 312 273 215 54 chr11 40244689 40244875 -81598981 - B3 SINE B2 0 216 1 3 892 240 86 0 0 chr11 40245398 40245433 -81598423 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 3 892 1066 288 64 28 chr11 40245778 40246311 -81597545 + L1MC3 LINE L1 6386 6937 -848 3 892 592 329 73 0 chr11 40246418 40246746 -81597110 + L1MC3 LINE L1 7130 7481 -304 3 892 27 0 0 0 chr11 40246986 40247013 -81596843 + AT_rich Low_complexity Low_complexity 1 27 0 3 892 24 0 0 0 chr11 40248089 40248113 -81595743 + AT_rich Low_complexity Low_complexity 1 24 0 3 892 2779 156 93 11 chr11 40248844 40249368 -81594488 - RMER4B LTR ERVK 0 585 19 3 892 465 34 0 0 chr11 40249967 40250026 -81593830 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 892 437 298 13 108 chr11 40250026 40250177 -81593679 + B4A SINE B4 9 145 -147 3 892 297 0 0 0 chr11 40250188 40250221 -81593635 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 892 207 0 0 0 chr11 40250222 40250245 -81593611 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 892 609 14 0 0 chr11 40250246 40250316 -81593540 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 892 345 303 71 0 chr11 40250631 40250730 -81593126 + PB1D10 SINE Alu 11 116 -1 3 892 262 290 82 51 chr11 40250947 40251045 -81592811 + MER63B DNA AcHobo 333 433 -3 3 892 22 35 0 0 chr11 40251183 40251212 -81592644 + AT_rich Low_complexity Low_complexity 1 29 0 3 892 405 0 0 0 chr11 40251329 40251374 -81592482 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 892 30 27 0 0 chr11 40252778 40252815 -81591041 + AT_rich Low_complexity Low_complexity 1 37 0 3 892 886 332 15 18 chr11 40253470 40253743 -81590113 + B4 SINE B4 2 273 -19 3 892 1030 119 0 36 chr11 40254366 40254532 -81589324 + MTB_Mm LTR MaLR 5 164 -243 3 892 247 308 75 23 chr11 40254594 40254767 -81589089 + L1ME2 LINE L1 5919 6100 -64 3 892 528 311 0 29 chr11 40255097 40255233 -81588623 + RSINE1 SINE B4 3 134 -31 3 892 1053 44 0 0 chr11 40255246 40255381 -81588475 + (TC)n Simple_repeat Simple_repeat 1 135 0 3 892 318 98 0 0 chr11 40255381 40255431 -81588425 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 892 232 94 0 0 chr11 40255989 40256021 -81587835 + Lx8 LINE L1 6722 6753 -720 3 892 288 315 69 8 chr11 40256040 40256171 -81587685 - MER5A DNA MER1_type -35 154 16 3 892 218 339 15 0 chr11 40257660 40257725 -81586131 + ID SINE ID 1 66 -158 3 892 1121 58 0 0 chr11 40257746 40257883 -81585973 + B1_Mm SINE Alu 1 137 -10 3 892 317 43 0 21 chr11 40257883 40257931 -81585925 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 892 189 147 0 0 chr11 40258357 40258391 -81585465 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 892 348 127 0 0 chr11 40258391 40258446 -81585410 + (CTG)n Simple_repeat Simple_repeat 2 56 0 3 892 343 330 0 27 chr11 40258469 40258581 -81585275 + PB1D10 SINE Alu 1 109 -8 3 892 368 332 45 63 chr11 40258631 40258962 -81584894 + Lx8 LINE L1 6977 7301 -172 3 892 190 56 27 27 chr11 40258984 40259021 -81584835 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3 892 825 189 0 0 chr11 40259198 40259362 -81584494 + (CA)n Simple_repeat Simple_repeat 1 164 0 3 892 387 0 0 0 chr11 40260635 40260678 -81583178 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 892 504 0 0 0 chr11 40262787 40262843 -81581013 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 3 892 182 145 15 61 chr11 40263769 40263835 -81580021 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 3 892 693 347 138 38 chr11 40264016 40264950 -81578906 + L2a LINE L2 2396 3411 -15 3 892 1105 230 100 121 chr11 40265694 40266075 -81577781 - MTE2a LTR MaLR -6 373 1 3 892 549 233 0 0 chr11 40267434 40267537 -81576319 - PB1D10 SINE Alu -2 115 13 4 892 264 244 21 95 chr11 40267468 40267563 -81576293 - MT2B2 LTR ERVL -345 239 152 4 892 303 191 0 0 chr11 40268805 40268868 -81574988 + GA-rich Low_complexity Low_complexity 1 63 0 4 892 664 287 35 5 chr11 40269504 40269707 -81574149 - B3 SINE B2 -7 209 1 4 892 325 294 139 41 chr11 40270575 40270721 -81573135 + MIR3 SINE MIR 12 168 -40 4 892 23 0 0 0 chr11 40271021 40271044 -81572812 + AT_rich Low_complexity Low_complexity 1 23 0 4 892 305 362 142 30 chr11 40271625 40272060 -81571796 - L2 LINE L2 -384 3035 2552 4 892 286 305 68 38 chr11 40272449 40272582 -81571274 + MIR SINE MIR 26 162 -106 4 892 227 246 17 17 chr11 40272790 40272848 -81571008 + B3A SINE B2 15 72 -126 4 892 252 241 0 0 chr11 40272885 40272964 -81570892 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 892 532 154 47 11 chr11 40273228 40273339 -81570517 + B1_Mur4 SINE Alu 3 143 -7 4 892 504 117 0 0 chr11 40273339 40273416 -81570440 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 4 892 379 295 21 21 chr11 40273840 40273982 -81569874 - Kanga2_a DNA Tc2 -227 661 520 4 892 283 357 38 13 chr11 40274315 40274474 -81569382 - Kanga2_a DNA Tc2 -565 323 161 4 892 298 336 9 26 chr11 40274618 40274734 -81569122 + MER47B DNA MER2_type 304 417 -1 4 892 252 86 0 0 chr11 40274933 40274968 -81568888 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 892 1539 187 66 24 chr11 40275835 40276170 -81567686 + Lx5 LINE L1 6699 7047 -3 4 892 459 0 0 0 chr11 40276541 40276592 -81567264 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 892 718 309 49 30 chr11 40276637 40276904 -81566952 - B4 SINE B4 -18 274 3 4 892 699 158 17 9 chr11 40276957 40277072 -81566784 + B1_Mur1 SINE Alu 24 139 -10 4 892 358 319 35 0 chr11 40277180 40277296 -81566560 + MIRb SINE MIR 80 199 -69 4 892 27 29 0 0 chr11 40277330 40277364 -81566492 + AT_rich Low_complexity Low_complexity 1 34 0 4 892 260 315 13 40 chr11 40278396 40278472 -81565384 - ID2 SINE ID 0 83 10 4 892 639 277 24 33 chr11 40279010 40279223 -81564633 + B3 SINE B2 2 212 -4 4 892 572 260 68 45 chr11 40279268 40279445 -81564411 + B3A SINE B2 2 182 -16 4 892 1101 46 0 0 chr11 40279578 40279709 -81564147 + B1_Mus1 SINE Alu 1 131 -17 4 892 836 228 65 0 chr11 40279849 40280033 -81563823 + B3 SINE B2 8 203 -13 4 892 426 85 0 0 chr11 40280279 40280338 -81563518 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 4 892 396 0 0 0 chr11 40282553 40282597 -81561259 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 892 23 33 0 0 chr11 40284772 40284802 -81559054 + AT_rich Low_complexity Low_complexity 1 30 0 4 892 426 353 48 48 chr11 40284906 40285340 -81558516 - L2a LINE L2 -297 3129 2695 4 892 180 268 101 79 chr11 40286242 40286331 -81557525 - L2a LINE L2 -2 3424 3334 4 892 303 350 20 0 chr11 40286381 40286481 -81557375 - L2a LINE L2 0 3426 3325 4 892 29 28 0 0 chr11 40287416 40287452 -81556404 + AT_rich Low_complexity Low_complexity 1 36 0 4 892 383 310 18 60 chr11 40287870 40288038 -81555818 + RSINE1 SINE B4 2 162 -3 4 892 21 71 0 0 chr11 40289316 40289358 -81554498 + AT_rich Low_complexity Low_complexity 1 42 0 4 892 2638 91 30 12 chr11 40291623 40292022 -81551834 - RLTR9E LTR ERVK 0 409 4 4 892 396 0 0 0 chr11 40292022 40292066 -81551790 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 892 581 225 14 5 chr11 40292239 40292458 -81551398 + GA-rich Low_complexity Low_complexity 1 221 0 4 892 2504 191 51 8 chr11 40292504 40293036 -81550820 + Lx6 LINE L1 6345 6899 -561 4 892 14092 145 12 8 chr11 40293034 40295605 -81548251 - L1_Mm LINE L1 -1033 4850 2270 4 892 3377 138 6 8 chr11 40295584 40296243 -81547613 - L1VL4 LINE L1 -2524 1035 380 4 892 1400 212 20 3 chr11 40296249 40296543 -81547313 + Lx7 LINE L1 7062 7360 -336 4 892 1402 175 5 71 chr11 40296581 40296949 -81546907 + Lx7 LINE L1 7353 7696 0 4 892 543 236 8 8 chr11 40297158 40297282 -81546574 + Lx9 LINE L1 7151 7274 -370 4 892 468 218 49 0 chr11 40297321 40297463 -81546393 + Lx9 LINE L1 7489 7637 -7 4 892 194 193 18 0 chr11 40297476 40297533 -81546323 + GA-rich Low_complexity Low_complexity 4 61 0 4 892 238 310 115 0 chr11 40297700 40297787 -81546069 - MTE2a LTR MaLR -282 97 1 4 892 1333 90 15 5 chr11 40297827 40298061 -81545795 - L1_Mus3 LINE L1 0 6638 6422 4 892 273 305 0 31 chr11 40298772 40298968 -81544888 + RMER17C LTR ERVK 82 271 -139 4 892 215 353 25 25 chr11 40300128 40300247 -81543609 + MIRb SINE MIR 77 195 -73 4 892 3509 76 2 0 chr11 40300610 40301224 -81542632 - L1_Mus3 LINE L1 -665 5973 5359 4 892 1587 109 8 28 chr11 40301224 40301478 -81542378 + L1_Mus3 LINE L1 6389 6637 -1 4 892 4917 194 45 15 chr11 40301560 40302641 -81541215 + Lx5 LINE L1 5862 6975 -75 4 892 345 189 21 38 chr11 40302659 40302776 -81541080 + Lx5 LINE L1 6918 7049 -9 4 892 264 247 58 12 chr11 40303206 40303292 -81540564 - MTE2a LTR MaLR -4 375 286 4 892 863 170 14 0 chr11 40303458 40303599 -81540257 + B1_Mus2 SINE Alu 5 147 0 4 892 270 0 0 0 chr11 40303878 40303908 -81539948 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 892 391 91 0 0 chr11 40303908 40303956 -81539900 - HAL1-3A_ME LINE L1 -834 2024 1977 4 892 501 240 0 7 chr11 40303993 40304115 -81539741 - PB1D9 SINE Alu -27 122 5 4 892 288 192 40 27 chr11 40304385 40304460 -81539396 + MIR SINE MIR 117 192 -70 4 892 213 39 0 0 chr11 40305096 40305122 -81538734 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 4 892 258 301 12 12 chr11 40305671 40305755 -81538101 + L2b LINE L2 2659 2742 -677 4 892 272 333 76 52 chr11 40306016 40306307 -81537549 + L2b LINE L2 2944 3241 -134 4 892 1408 174 157 22 chr11 40306611 40306686 -81537170 - Lx5 LINE L1 -7 7043 6954 4 892 217 0 61 0 chr11 40306686 40306719 -81537137 + (CCA)n Simple_repeat Simple_repeat 2 36 0 4 892 1408 174 157 22 chr11 40306719 40307013 -81536843 - Lx5 LINE L1 -97 6953 6624 4 892 707 151 135 0 chr11 40307394 40307520 -81536336 - B1_Mus2 SINE Alu 0 147 5 4 892 418 332 35 9 chr11 40307938 40308166 -81535690 - L2a LINE L2 -138 3288 3055 4 892 1309 209 79 0 chr11 40308318 40308658 -81535198 - Lx9 LINE L1 0 7644 7278 4 892 955 141 0 0 chr11 40308683 40308832 -81535024 - B1_Mur4 SINE Alu 0 150 2 4 892 252 0 0 0 chr11 40308928 40308956 -81534900 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 892 378 0 0 0 chr11 40308956 40308998 -81534858 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 892 216 279 19 9 chr11 40309006 40309111 -81534745 + A-rich Low_complexity Low_complexity 2 107 0 4 892 1452 243 18 8 chr11 40309168 40309554 -81534302 - Lx7 LINE L1 -438 7258 6869 4 892 1312 199 8 0 chr11 40309546 40309807 -81534049 - Lx9 LINE L1 -576 7068 6806 4 892 449 297 48 30 chr11 40309823 40310118 -81533738 - L1MD LINE L1 -794 5352 5053 4 892 318 80 0 0 chr11 40310400 40310450 -81533406 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 892 259 302 21 14 chr11 40310513 40310654 -81533202 + L1MC3 LINE L1 6031 6172 -1613 4 892 399 341 48 19 chr11 40310677 40311051 -81532805 + L1MC3 LINE L1 6225 6609 -1176 4 892 366 23 0 0 chr11 40311054 40311097 -81532759 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 892 264 203 40 0 chr11 40311170 40311244 -81532612 - L1MD LINE L1 -1665 4481 4405 4 892 213 39 0 0 chr11 40311636 40311662 -81532194 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 892 198 0 0 0 chr11 40311662 40311684 -81532172 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 892 300 339 53 16 chr11 40311781 40312231 -81531625 - L1M5 LINE L1 -2257 3889 3423 4 892 325 299 88 61 chr11 40312247 40312475 -81531381 - L1MD LINE L1 -2725 3421 3188 4 892 2116 83 7 7 chr11 40312510 40312801 -81531055 + L1Md_F2 LINE L1 6288 6578 -4 4 892 1180 169 14 10 chr11 40314654 40314863 -81528993 - ORR1B2 LTR MaLR -3 364 155 4 892 206 222 0 0 chr11 40315091 40315127 -81528729 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 892 22 0 0 0 chr11 40315161 40315183 -81528673 + AT_rich Low_complexity Low_complexity 1 22 0 4 892 470 333 88 83 chr11 40315285 40316041 -81527815 - L2c LINE L2 -91 3284 2530 4 892 333 145 0 42 chr11 40316186 40316258 -81527598 + B1_Mur2 SINE Alu 84 149 0 4 892 21 0 0 0 chr11 40316316 40316337 -81527519 + AT_rich Low_complexity Low_complexity 1 21 0 4 892 1185 107 0 33 chr11 40316341 40316525 -81527331 + B2_Mm2 SINE B2 1 178 -17 4 892 723 24 0 0 chr11 40316525 40316610 -81527246 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 4 892 1296 84 0 0 chr11 40316616 40316795 -81527061 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 4 892 195 42 0 0 chr11 40316795 40316819 -81527037 + (GAGAA)n Simple_repeat Simple_repeat 1 24 0 4 892 429 20 0 0 chr11 40317113 40317163 -81526693 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 892 246 32 0 0 chr11 40317349 40317380 -81526476 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 892 3333 211 59 67 chr11 40317825 40317945 -81525911 + RMER19B LTR ERVK 1 132 -770 4 892 1583 36 0 5 chr11 40317945 40318138 -81525718 + B2_Mm1a SINE B2 2 193 0 4 892 3333 211 59 67 chr11 40318138 40318914 -81524942 + RMER19B LTR ERVK 133 890 -12 4 892 246 270 22 0 chr11 40319070 40319159 -81524697 + RMER1B Other Other 61 151 -915 4 892 3066 231 73 87 chr11 40319579 40320602 -81523254 + RMER1B Other Other 43 1051 -15 4 892 420 344 58 4 chr11 40321024 40321249 -81522607 - MIR SINE MIR -23 239 3 4 892 1108 292 58 17 chr11 40322431 40322790 -81521066 - MTEa LTR MaLR 0 379 6 4 892 2165 165 26 10 chr11 40322932 40323318 -81520538 + ORR1B1 LTR MaLR 3 394 0 4 892 313 358 15 15 chr11 40323367 40323503 -81520353 + MER5A DNA MER1_type 32 167 -22 4 892 288 339 31 46 chr11 40324651 40324781 -81519075 + MLT1D LTR MaLR 9 136 -459 4 892 1313 66 9 9 chr11 40325074 40325288 -81518568 + (GAAA)n Simple_repeat Simple_repeat 1 213 0 4 892 758 244 44 0 chr11 40325299 40325459 -81518397 - B3A SINE B2 -30 168 2 5 892 465 340 141 54 chr11 40325941 40326295 -81517561 + MLT1D LTR MaLR 102 486 -19 4 892 426 309 93 40 chr11 40326322 40326646 -81517210 + L1MB7 LINE L1 3110 3450 -2696 5 892 708 239 72 0 chr11 40326646 40326813 -81517043 + B3A SINE B2 2 180 -18 5 892 356 297 130 74 chr11 40326843 40327037 -81516819 + L1MB7 LINE L1 3733 3942 -2204 5 892 486 240 96 0 chr11 40327037 40327162 -81516694 - B1_Mur2 SINE Alu -11 138 2 5 892 356 297 130 74 chr11 40327162 40327414 -81516442 + L1MB7 LINE L1 3943 4204 -1942 5 892 552 256 0 0 chr11 40327423 40327547 -81516309 + B1_Mur2 SINE Alu 21 144 -5 5 892 507 157 0 0 chr11 40327547 40327636 -81516220 + GA-rich Low_complexity Low_complexity 4 92 0 5 892 1200 59 12 6 chr11 40327637 40327808 -81516048 + (GGGA)n Simple_repeat Simple_repeat 4 175 0 5 892 872 75 14 0 chr11 40327808 40327955 -81515901 + RMER17B LTR ERVK 312 460 -498 5 892 678 250 53 39 chr11 40328157 40328365 -81515491 + B3 SINE B2 1 211 -5 5 892 413 281 52 5 chr11 40328407 40328618 -81515238 + L1MB7 LINE L1 4352 4572 -1574 5 892 387 0 0 0 chr11 40328680 40328723 -81515133 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 892 390 271 68 0 chr11 40328829 40328962 -81514894 - Lx8 LINE L1 -389 7084 6943 5 892 888 300 68 27 chr11 40329010 40329193 -81514663 + L1MB7 LINE L1 4636 4810 -1336 5 892 662 65 11 0 chr11 40329193 40329285 -81514571 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 892 888 300 68 27 chr11 40329285 40329691 -81514165 + L1MB7 LINE L1 4811 5249 -897 5 892 324 70 0 0 chr11 40329713 40329756 -81514100 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 892 283 283 215 8 chr11 40329965 40330086 -81513770 + B1F1 SINE Alu 3 148 -1 5 892 1382 70 27 5 chr11 40330089 40330275 -81513581 + B2_Mm2 SINE B2 1 190 -5 5 892 23 33 0 0 chr11 40330361 40330391 -81513465 + AT_rich Low_complexity Low_complexity 1 30 0 5 892 1353 226 69 27 chr11 40330391 40330872 -81512984 + L1MB7 LINE L1 5675 6175 -9 5 892 390 42 0 0 chr11 40331192 40331240 -81512616 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 5 892 4486 176 34 28 chr11 40331241 40332135 -81511721 + Lx3C LINE L1 6076 6974 -2 5 892 408 137 0 0 chr11 40332186 40332275 -81511581 + L1Md_F2 LINE L1 6494 6582 0 5 892 1455 53 21 0 chr11 40332353 40332542 -81511314 + B2_Mm1t SINE B2 1 193 0 5 892 2084 148 8 34 chr11 40333524 40333902 -81509954 - Lx LINE L1 0 6654 6287 5 892 291 294 0 92 chr11 40335373 40335493 -81508363 + MLT1A LTR MaLR 5 113 -261 5 892 378 268 0 0 chr11 40335488 40335559 -81508297 + ID4_ SINE ID 6 76 -7 5 892 241 294 44 0 chr11 40335499 40335567 -81508289 + B4A SINE B4 17 87 -205 5 892 711 144 0 0 chr11 40335567 40335692 -81508164 + (TAGA)n Simple_repeat Simple_repeat 1 125 0 5 892 230 178 0 22 chr11 40335778 40335824 -81508032 + CT-rich Low_complexity Low_complexity 3 47 0 5 892 24 0 0 0 chr11 40336228 40336252 -81507604 + AT_rich Low_complexity Low_complexity 1 24 0 5 892 911 246 6 0 chr11 40337146 40337325 -81506531 + B3 SINE B2 2 181 -35 5 892 13040 86 32 15 chr11 40337601 40340258 -81503598 + L1VL2 LINE L1 284 2983 -632 5 892 1388 88 63 0 chr11 40340338 40340546 -81503310 + Lx LINE L1 5782 6003 -978 5 892 642 129 0 8 chr11 40340546 40340663 -81503193 + Lx LINE L1 6534 6649 -5 5 892 687 274 59 8 chr11 40340663 40340693 -81503163 + Lx LINE L1 6004 6032 -949 5 892 834 314 129 39 chr11 40340798 40341179 -81502677 + LTR40a LTR ERVL 105 519 0 5 892 33 25 0 0 chr11 40341295 40341335 -81502521 + AT_rich Low_complexity Low_complexity 1 40 0 5 892 483 63 0 0 chr11 40341587 40341650 -81502206 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 5 892 216 0 0 0 chr11 40341870 40341894 -81501962 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 892 339 65 0 0 chr11 40341916 40341962 -81501894 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 892 301 333 9 56 chr11 40344498 40344606 -81499250 + RMER15 LTR ERVL 359 461 -114 5 892 222 174 0 0 chr11 40344633 40344679 -81499177 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 892 509 281 152 25 chr11 40345313 40345517 -81498339 + B4A SINE B4 63 292 0 5 892 707 264 7 0 chr11 40346420 40346564 -81497292 - B3A SINE B2 -53 145 1 5 892 502 332 68 34 chr11 40347039 40347273 -81496583 - B4 SINE B4 0 292 51 5 892 29 28 0 0 chr11 40347323 40347359 -81496497 + AT_rich Low_complexity Low_complexity 1 36 0 5 892 342 0 0 0 chr11 40347378 40347416 -81496440 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 892 885 307 32 36 chr11 40347443 40347723 -81496133 - B4A SINE B4 -8 284 6 5 892 455 280 69 14 chr11 40348774 40348919 -81494937 + MTEb LTR MaLR 49 201 -178 5 892 3219 222 78 32 chr11 40348919 40349872 -81493984 + Lx9 LINE L1 6629 7624 -20 5 892 844 189 26 0 chr11 40349882 40350035 -81493821 - B2_Mm2 SINE B2 -26 169 13 5 892 349 198 36 24 chr11 40350022 40350105 -81493751 + MTEb LTR MaLR 287 370 -9 5 892 306 295 80 75 chr11 40350312 40350499 -81493357 + L1ME3 LINE L1 5478 5665 -508 5 892 357 340 54 58 chr11 40350510 40350788 -81493068 + L1ME3 LINE L1 5754 6030 -132 5 892 1025 284 29 22 chr11 40350882 40351086 -81492770 + B4 SINE B4 14 219 -73 5 892 387 0 0 0 chr11 40351086 40351129 -81492727 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 5 892 1025 284 29 22 chr11 40351129 40351201 -81492655 + B4 SINE B4 220 292 0 5 892 363 293 27 67 chr11 40351221 40351371 -81492485 + RSINE1 SINE B4 3 146 -19 5 892 23 33 0 0 chr11 40351397 40351427 -81492429 + AT_rich Low_complexity Low_complexity 1 30 0 5 892 304 226 73 73 chr11 40351427 40351537 -81492319 + MT2B LTR ERVL 169 278 -323 5 892 852 115 0 0 chr11 40351441 40351563 -81492293 + B1_Mur4 SINE Alu 28 149 -1 5 892 183 129 0 0 chr11 40351564 40351595 -81492261 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 5 892 254 252 48 39 chr11 40351837 40351940 -81491916 + L1ME3B LINE L1 5887 5990 -250 5 892 369 0 0 0 chr11 40353695 40353736 -81490120 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 892 225 0 0 0 chr11 40354087 40354112 -81489744 + (A)n Simple_repeat Simple_repeat 1 25 0 5 892 658 246 72 52 chr11 40355435 40355684 -81488172 - RMER15 LTR ERVL -15 560 307 5 892 414 0 0 0 chr11 40355715 40355761 -81488095 + (TTA)n Simple_repeat Simple_repeat 2 47 0 5 892 601 265 94 113 chr11 40356109 40356416 -81487440 - Arthur1B DNA Tip100 -76 1149 843 5 892 858 244 62 0 chr11 40356416 40356625 -81487231 + ID_B1 SINE B4 1 222 -2 5 892 601 265 94 113 chr11 40356625 40356776 -81487080 - Arthur1B DNA Tip100 -383 842 700 5 892 1151 82 0 0 chr11 40357341 40357487 -81486369 + B1_Mus1 SINE Alu 1 146 -2 5 892 432 0 0 0 chr11 40357487 40357535 -81486321 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 892 21 0 0 0 chr11 40357535 40357556 -81486300 + AT_rich Low_complexity Low_complexity 1 21 0 5 892 493 262 40 33 chr11 40357561 40357711 -81486145 + B3A SINE B2 48 198 0 5 892 306 0 0 0 chr11 40358627 40358661 -81485195 + (T)n Simple_repeat Simple_repeat 1 34 0 5 892 1041 102 0 0 chr11 40359345 40359511 -81484345 + (TC)n Simple_repeat Simple_repeat 1 166 0 5 892 441 0 0 0 chr11 40359518 40359567 -81484289 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 892 332 305 112 69 chr11 40360741 40361044 -81482812 + L1ME3A LINE L1 5851 6166 -7 5 892 340 216 70 40 chr11 40361067 40361169 -81482687 + MIR3 SINE MIR 76 174 -34 5 892 687 57 15 106 chr11 40361396 40361594 -81482262 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 892 256 266 31 0 chr11 40361777 40361841 -81482015 + GA-rich Low_complexity Low_complexity 4 69 0 5 892 644 297 0 0 chr11 40362016 40362154 -81481702 - ID_B1 SINE B4 0 224 87 5 892 251 146 0 18 chr11 40362174 40362230 -81481626 + CT-rich Low_complexity Low_complexity 2 56 0 5 892 1122 75 0 26 chr11 40362236 40362250 -81481606 - B1_Mus1 SINE Alu 0 148 138 5 892 342 0 0 0 chr11 40362250 40362288 -81481568 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 892 1122 75 0 26 chr11 40362288 40362424 -81481432 - B1_Mus1 SINE Alu -11 137 2 5 892 1151 70 0 0 chr11 40362511 40362718 -81481138 - L1_Mus1 LINE L1 0 6567 6407 5 892 1199 68 0 0 chr11 40362718 40362880 -81480976 + L1_Mus1 LINE L1 5776 5937 -630 5 892 931 298 98 13 chr11 40364002 40364318 -81479538 + MER2 DNA MER2_type 1 343 -2 5 892 268 395 85 23 chr11 40364634 40364940 -81478916 + MLT1J LTR MaLR 8 332 -180 5 892 465 297 27 153 chr11 40364948 40364996 -81478860 + B3A SINE B2 1 43 -155 5 892 786 162 73 7 chr11 40364996 40365133 -81478723 + B1_Mur3 SINE Alu 2 147 -2 5 892 465 297 27 153 chr11 40365133 40365267 -81478589 + B3A SINE B2 44 160 -38 5 892 288 0 0 0 chr11 40365271 40365303 -81478553 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 892 24 32 0 0 chr11 40365875 40365906 -81477950 + AT_rich Low_complexity Low_complexity 1 31 0 5 892 270 56 0 0 chr11 40366695 40366731 -81477125 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 5 892 476 329 31 25 chr11 40366859 40367018 -81476838 - MLT1L LTR MaLR -343 267 108 5 892 1169 297 146 24 chr11 40367214 40367313 -81476543 - Lx8 LINE L1 -6 7467 7344 5 892 252 0 0 0 chr11 40367313 40367341 -81476515 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 892 453 19 0 0 chr11 40367341 40367394 -81476462 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 892 1169 297 146 24 chr11 40367394 40368048 -81475808 - Lx8 LINE L1 -130 7343 6623 5 892 21 0 0 0 chr11 40370070 40370091 -81473765 + AT_rich Low_complexity Low_complexity 1 21 0 5 893 229 319 62 111 chr11 40370233 40370441 -81473415 + MTEa LTR MaLR 64 261 -98 5 893 247 255 83 21 chr11 40370462 40370558 -81473298 + MTEa LTR MaLR 278 379 0 5 893 1133 300 82 34 chr11 40370567 40370881 -81472975 + MLT1C LTR MaLR 5 338 -129 5 893 1392 77 5 10 chr11 40370881 40371077 -81472779 + B2_Mm2 SINE B2 1 195 0 5 893 1133 300 82 34 chr11 40371077 40371200 -81472656 + MLT1C LTR MaLR 339 463 -4 5 893 464 271 85 0 chr11 40371416 40371545 -81472311 + B1F SINE Alu 4 143 -6 5 893 184 326 34 34 chr11 40371552 40371641 -81472215 + L2c LINE L2 3252 3340 -47 5 893 291 73 55 0 chr11 40372006 40372061 -81471795 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 893 38 0 0 0 chr11 40372525 40372563 -81471293 + AT_rich Low_complexity Low_complexity 1 38 0 5 893 851 223 0 159 chr11 40373430 40373546 -81470310 - B3 SINE B2 -6 210 108 5 893 965 128 61 11 chr11 40373546 40373727 -81470129 + B2_Mm2 SINE B2 2 191 -4 5 893 851 223 0 159 chr11 40373727 40373855 -81470001 - B3 SINE B2 -109 107 5 5 893 1604 42 11 0 chr11 40374639 40374830 -81469026 + B2_Mm1t SINE B2 1 193 0 6 893 246 182 73 29 chr11 40375340 40375408 -81468448 + ID4_ SINE ID 2 72 -11 6 893 1898 97 60 137 chr11 40376951 40377418 -81466438 - Lx3C LINE L1 -3 6973 6543 6 893 482 217 0 0 chr11 40377673 40377765 -81466091 + B1_Mur2 SINE Alu 52 143 -6 6 893 213 262 123 31 chr11 40377850 40377980 -81465876 - MIRb SINE MIR -89 179 38 6 893 235 281 157 0 chr11 40378057 40378146 -81465710 - MER117 DNA MER1_type -42 155 53 6 893 191 188 0 20 chr11 40378158 40378207 -81465649 + CT-rich Low_complexity Low_complexity 1 48 0 6 893 354 319 66 25 chr11 40378247 40378300 -81465556 - B1F SINE Alu -21 128 73 6 893 609 237 0 0 chr11 40378300 40378418 -81465438 - PB1D9 SINE Alu -1 119 2 6 893 354 319 66 25 chr11 40378418 40378486 -81465370 - B1F SINE Alu -77 72 2 6 893 659 215 7 29 chr11 40378532 40378671 -81465185 + B1_Mur3 SINE Alu 1 136 -13 6 893 323 368 28 34 chr11 40378772 40378949 -81464907 + MIRb SINE MIR 23 198 -70 6 893 1142 214 15 5 chr11 40379954 40380151 -81463705 + B3 SINE B2 3 201 -15 6 893 2296 119 138 48 chr11 40382075 40382517 -81461339 + RLTR45 LTR ERVK 1 482 0 6 893 410 93 0 0 chr11 40382560 40382614 -81461242 - ORR1A3 LTR MaLR -1 325 272 6 893 1895 114 10 6 chr11 40383983 40384310 -81459546 - ORR1A3 LTR MaLR -8 319 1 6 893 1924 70 57 47 chr11 40384541 40384841 -81459015 - L1_Mus2 LINE L1 0 6566 6264 6 893 580 143 0 0 chr11 40384841 40384932 -81458924 + L1_Mus2 LINE L1 6158 6248 -318 6 893 23 0 0 0 chr11 40384941 40384964 -81458892 + AT_rich Low_complexity Low_complexity 1 23 0 6 893 687 181 110 37 chr11 40385298 40385473 -81458383 + B2_Mm2 SINE B2 1 193 0 6 893 1430 204 50 4 chr11 40385521 40385802 -81458054 + RLTR41 LTR ERV1 153 446 0 6 893 334 323 40 46 chr11 40385918 40386088 -81457768 + MLT1A LTR MaLR 1 169 -205 6 893 233 333 91 0 chr11 40386088 40386154 -81457702 + ID4_ SINE ID 2 73 -10 6 893 676 291 29 34 chr11 40386202 40386408 -81457448 + MLT1A LTR MaLR 166 370 -4 6 893 314 325 99 0 chr11 40387699 40387850 -81456006 - MTEa LTR MaLR -17 362 197 6 893 1819 179 215 14 chr11 40388467 40388835 -81455021 + RLTR41 LTR ERV1 5 446 0 6 893 582 51 0 0 chr11 40389039 40389117 -81454739 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 893 278 270 29 39 chr11 40389118 40389222 -81454634 + MLT1A LTR MaLR 343 445 -44 6 893 204 170 0 0 chr11 40389703 40389756 -81454100 + A-rich Low_complexity Low_complexity 1 53 0 6 893 342 45 0 0 chr11 40391373 40391417 -81452439 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 893 575 226 162 35 chr11 40391426 40391568 -81452288 - B3 SINE B2 -56 160 1 6 893 1102 80 114 11 chr11 40392015 40392191 -81451665 + RMER17C-int LTR ERVK 2746 2939 -299 6 893 351 87 0 0 chr11 40392190 40392236 -81451620 + RMER17C-int LTR ERVK 3193 3238 0 6 893 995 199 80 63 chr11 40392236 40392537 -81451319 + RMER17C LTR ERVK 1 306 -104 6 893 749 288 58 104 chr11 40393133 40393509 -81450347 - ORR1E LTR MaLR 0 359 1 6 893 260 373 118 88 chr11 40393583 40393821 -81450035 - L2b LINE L2 -34 3341 3097 6 893 245 282 143 18 chr11 40393828 40393940 -81449916 + ORR1E LTR MaLR 8 133 -226 6 893 1033 58 55 41 chr11 40394324 40394469 -81449387 + B1_Mus1 SINE Alu 2 148 0 6 893 234 0 0 0 chr11 40394471 40394497 -81449359 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 893 252 0 0 0 chr11 40394777 40394805 -81449051 + (T)n Simple_repeat Simple_repeat 1 28 0 6 893 726 219 80 0 chr11 40395792 40395929 -81447927 + B1_Mur2 SINE Alu 2 149 0 6 893 219 359 84 42 chr11 40396820 40397035 -81446821 - MIRc SINE MIR -36 232 9 6 893 281 268 108 12 chr11 40397216 40397299 -81446557 + PB1D10 SINE Alu 16 106 -11 6 893 305 47 23 0 chr11 40397302 40397345 -81446511 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 6 893 224 224 25 62 chr11 40397448 40397529 -81446327 + PB1 SINE Alu 47 124 -3 6 893 1016 139 180 11 chr11 40397738 40397927 -81445929 - URR1B DNA MER1_type 0 225 5 6 893 632 239 70 6 chr11 40398524 40398680 -81445176 + ID_B1 SINE B4 5 170 -54 6 893 1014 206 108 0 chr11 40398692 40398896 -81444960 + URR1A DNA MER1_type 1 226 0 6 893 210 171 0 0 chr11 40398901 40398942 -81444914 + GA-rich Low_complexity Low_complexity 4 44 0 6 893 652 248 28 0 chr11 40398942 40399087 -81444769 + ID_B1 SINE B4 76 224 0 6 893 303 28 0 0 chr11 40399155 40399191 -81444665 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 6 893 22 35 0 0 chr11 40399321 40399350 -81444506 + AT_rich Low_complexity Low_complexity 1 29 0 6 893 289 336 35 55 chr11 40399811 40399956 -81443900 - Charlie10 DNA MER1_type -2600 222 81 6 893 762 271 31 10 chr11 40400024 40400218 -81443638 + B3A SINE B2 1 198 0 6 893 324 242 36 18 chr11 40400727 40400846 -81443010 + B1F SINE Alu 5 149 0 6 893 703 286 13 0 chr11 40401260 40401414 -81442442 - RSINE1 SINE B4 -4 161 6 6 893 511 311 139 69 chr11 40402473 40402902 -81440954 + MLT1G LTR MaLR 1 444 -111 6 893 569 274 0 133 chr11 40403001 40403182 -81440674 + RSINE1 SINE B4 9 165 0 6 893 183 80 0 0 chr11 40403189 40403214 -81440642 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 893 347 299 89 14 chr11 40403383 40403529 -81440327 + L3 LINE CR1 4084 4240 -249 6 893 878 158 50 0 chr11 40403587 40403726 -81440130 + B1_Mur3 SINE Alu 3 148 -1 6 893 654 37 0 0 chr11 40403729 40403810 -81440046 + (GGA)n Simple_repeat Simple_repeat 2 82 0 6 893 853 239 72 38 chr11 40404049 40404258 -81439598 + B4A SINE B4 3 218 -74 6 893 306 264 10 3 chr11 40404570 40404661 -81439195 - MIR SINE MIR -108 168 76 6 893 1241 76 0 0 chr11 40404737 40404882 -81438974 + B1_Mus1 SINE Alu 2 146 -2 6 893 272 137 20 0 chr11 40404882 40404933 -81438923 + GA-rich Low_complexity Low_complexity 1 52 0 6 893 863 247 80 17 chr11 40406446 40406747 -81437109 - MER33 DNA MER1_type 0 324 5 6 893 654 319 24 5 chr11 40406839 40407047 -81436809 + ID_B1 SINE B4 7 218 -6 6 893 233 330 42 67 chr11 40407149 40407269 -81436587 + MIR SINE MIR 115 231 -31 6 893 699 230 0 0 chr11 40407331 40407457 -81436399 + B3 SINE B2 5 130 -86 6 893 745 208 11 0 chr11 40407496 40407674 -81436182 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 6 893 480 62 0 0 chr11 40407695 40407759 -81436097 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 6 893 1462 268 133 56 chr11 40407945 40408770 -81435086 + L1MA6 LINE L1 5408 6296 -4 6 893 716 287 138 25 chr11 40408829 40409147 -81434709 + ORR1E LTR MaLR 6 359 0 6 893 502 54 27 0 chr11 40409563 40409637 -81434219 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 893 216 158 0 0 chr11 40410670 40410708 -81433148 + RSINE1 SINE B4 3 40 -125 6 893 194 0 39 0 chr11 40410927 40410953 -81432903 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 6 893 240 35 0 0 chr11 40411332 40411361 -81432495 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 893 251 211 13 66 chr11 40411515 40411591 -81432265 + GA-rich Low_complexity Low_complexity 1 72 0 6 893 319 256 60 12 chr11 40411603 40411686 -81432170 + B4 SINE B4 2 88 -204 6 893 229 277 113 47 chr11 40411610 40411716 -81432140 + B3A SINE B2 7 119 -79 6 893 201 233 33 16 chr11 40411861 40411922 -81431934 + GA-rich Low_complexity Low_complexity 3 64 0 6 893 299 301 36 12 chr11 40411985 40412069 -81431787 + B4 SINE B4 201 286 -6 6 893 181 350 9 55 chr11 40412704 40412813 -81431043 - MIRc SINE MIR -120 148 45 6 893 192 40 0 0 chr11 40413251 40413276 -81430580 + (T)n Simple_repeat Simple_repeat 1 25 0 6 893 335 166 17 5 chr11 40413276 40413357 -81430499 - PB1D7 SINE Alu 0 120 48 6 893 279 266 113 92 chr11 40414425 40414566 -81429290 - Charlie8 DNA MER1_type -2254 174 31 6 893 23 54 0 0 chr11 40415366 40415403 -81428453 + AT_rich Low_complexity Low_complexity 1 37 0 6 893 1207 62 0 14 chr11 40416459 40416606 -81427250 + B1_Mus2 SINE Alu 1 145 -2 6 893 465 254 0 0 chr11 40416653 40416783 -81427073 + (CA)n Simple_repeat Simple_repeat 1 130 0 6 893 640 236 0 11 chr11 40416828 40417008 -81426848 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 893 642 293 90 57 chr11 40417204 40417717 -81426139 + L1MB7 LINE L1 4589 5118 -1028 6 893 1621 57 16 0 chr11 40417720 40417912 -81425944 + B2_Mm2 SINE B2 1 195 0 6 893 225 274 20 0 chr11 40417941 40417992 -81425864 + ID SINE ID 11 62 -162 6 893 597 52 0 0 chr11 40418000 40418077 -81425779 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 893 816 183 42 88 chr11 40418095 40418287 -81425569 + B2_Mm2 SINE B2 2 184 -11 6 893 1173 276 75 41 chr11 40418623 40419541 -81424315 + L1MB7 LINE L1 5126 6092 -92 6 893 456 306 80 71 chr11 40421482 40421827 -81422029 - MLT1C LTR MaLR -4 463 70 6 893 1446 182 53 27 chr11 40421827 40422126 -81421730 + Lx5 LINE L1 6655 6961 -89 6 893 1253 105 27 22 chr11 40422164 40422349 -81421507 + B2_Mm2 SINE B2 1 186 -9 6 893 198 0 0 0 chr11 40422406 40422428 -81421428 + (A)n Simple_repeat Simple_repeat 1 22 0 6 893 705 306 5 67 chr11 40423491 40423715 -81420141 + ID_B1 SINE B4 1 210 -14 6 893 210 71 0 0 chr11 40423721 40423749 -81420107 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 893 1006 260 38 5 chr11 40423756 40423965 -81419891 + B3 SINE B2 1 216 0 6 893 459 325 82 5 chr11 40424509 40424704 -81419152 + B3 SINE B2 1 210 -6 6 893 467 241 181 0 chr11 40424872 40425089 -81418767 + L1MC1 LINE L1 5881 6151 -193 6 893 291 216 97 58 chr11 40425134 40425237 -81418619 + L1MC1 LINE L1 6236 6342 -2 6 893 212 179 0 0 chr11 40425286 40425325 -81418531 + A-rich Low_complexity Low_complexity 1 39 0 6 893 249 167 0 53 chr11 40426147 40426223 -81417633 + GA-rich Low_complexity Low_complexity 1 72 0 6 893 2640 248 62 60 chr11 40426740 40427593 -81416263 + Lx8 LINE L1 6184 7038 -435 6 893 6287 46 1 0 chr11 40427594 40428308 -81415548 + L1_Mus2 LINE L1 5851 6565 -1 7 893 25 31 0 0 chr11 40428309 40428341 -81415515 + AT_rich Low_complexity Low_complexity 1 32 0 7 893 1280 42 0 0 chr11 40428544 40428688 -81415168 + B1_Mm SINE Alu 3 146 -1 7 893 241 47 47 0 chr11 40428689 40428732 -81415124 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 7 893 357 289 6 155 chr11 40428907 40429075 -81414781 + ID_B1 SINE B4 82 224 0 7 893 216 258 0 31 chr11 40429112 40429176 -81414680 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 7 893 860 295 19 8 chr11 40429806 40430066 -81413790 + Lx8 LINE L1 6848 7110 -363 7 893 442 280 291 42 chr11 40430215 40430521 -81413335 + Lx8 LINE L1 7083 7464 -9 6 893 237 33 0 0 chr11 40430699 40430729 -81413127 + (A)n Simple_repeat Simple_repeat 1 30 0 7 893 743 289 60 26 chr11 40431545 40431779 -81412077 + B4A SINE B4 24 265 -27 7 893 441 0 0 0 chr11 40431818 40431867 -81411989 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 893 2187 186 41 29 chr11 40432456 40432872 -81410984 - MTC LTR MaLR 0 421 1 7 893 977 224 5 40 chr11 40433022 40433222 -81410634 + B3 SINE B2 16 208 -8 7 893 181 349 35 24 chr11 40434069 40434154 -81409702 - MER5A DNA MER1_type -19 170 85 7 893 241 300 0 0 chr11 40434593 40434643 -81409213 - MER5A DNA MER1_type -137 52 9 7 893 349 326 10 10 chr11 40434702 40434801 -81409055 + B4A SINE B4 2 100 -192 7 893 327 104 0 0 chr11 40434814 40434862 -81408994 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 893 3389 78 33 2 chr11 40434865 40435291 -81408565 - Lx3A LINE L1 -2 6979 6541 7 893 442 349 13 7 chr11 40435296 40435449 -81408407 + B4A SINE B4 104 257 -35 7 893 1205 267 60 66 chr11 40435723 40435809 -81408047 + MTEb LTR MaLR 1 89 -290 7 893 2261 167 32 51 chr11 40435809 40436276 -81407580 - RMER6B LTR ERVK -1 460 3 7 893 1205 267 60 66 chr11 40436276 40436570 -81407286 + MTEb LTR MaLR 90 379 0 7 893 306 0 0 0 chr11 40436644 40436678 -81407178 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 893 201 74 0 0 chr11 40436731 40436758 -81407098 + (TTC)n Simple_repeat Simple_repeat 2 28 0 7 893 276 125 0 127 chr11 40436820 40436875 -81406981 + RMER6B LTR ERVK 71 118 -343 7 893 612 315 0 0 chr11 40436866 40437009 -81406847 - B4A SINE B4 -146 146 4 7 893 524 163 94 27 chr11 40438435 40438550 -81405306 + B3 SINE B2 84 189 -27 7 893 511 306 36 7 chr11 40438596 40438734 -81405122 + RSINE1 SINE B4 17 158 -7 7 893 228 176 44 0 chr11 40438748 40438816 -81405040 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 893 4713 14 0 0 chr11 40439023 40439516 -81404340 - MT2_Mm LTR ERVL 0 493 1 7 893 322 0 0 0 chr11 40439516 40439554 -81404302 - MERVL-int LTR ERVL 0 5485 5448 7 893 368 179 46 35 chr11 40439554 40439641 -81404215 - ORR1A3-int LTR MaLR -1323 640 553 7 893 45572 14 4 0 chr11 40439641 40444967 -81398889 - MERVL-int LTR ERVL -125 5360 1 7 893 4713 14 0 0 chr11 40444967 40445460 -81398396 - MT2_Mm LTR ERVL 0 493 1 7 893 243 0 0 0 chr11 40445585 40445612 -81398244 + (T)n Simple_repeat Simple_repeat 1 27 0 7 893 417 161 0 0 chr11 40445669 40445756 -81398100 + T-rich Low_complexity Low_complexity 1 87 0 7 893 1215 75 0 0 chr11 40445760 40445907 -81397949 - B1_Mus1 SINE Alu 0 148 2 7 893 294 320 126 6 chr11 40446060 40446242 -81397614 - L1MC4 LINE L1 -121 7761 7558 7 893 609 254 0 55 chr11 40446329 40446434 -81397422 - ORR1D1 LTR MaLR 0 374 277 7 893 2003 176 59 46 chr11 40446434 40446822 -81397034 + ORR1B1 LTR MaLR 2 394 0 7 893 609 271 7 80 chr11 40446822 40446877 -81396979 - ORR1D1 LTR MaLR -98 281 237 7 893 351 347 20 82 chr11 40447130 40447375 -81396481 + RMER15 LTR ERVL 311 540 -35 7 893 36234 35 0 0 chr11 40447397 40452837 -81391019 + L1Md_T LINE L1 53 5589 -297 7 893 9574 6 0 0 chr11 40452837 40453833 -81390023 + L1Md_T LINE L1 5590 6585 0 7 893 375 23 0 0 chr11 40453840 40453884 -81389972 + (A)n Simple_repeat Simple_repeat 1 44 0 7 893 1467 88 16 10 chr11 40453977 40454171 -81389685 - B2_Mm2 SINE B2 0 195 1 7 893 532 280 197 43 chr11 40454175 40454713 -81389143 - L1MC4 LINE L1 -598 7444 6824 7 893 31 0 0 0 chr11 40454825 40454856 -81389000 + AT_rich Low_complexity Low_complexity 1 31 0 7 893 216 0 0 0 chr11 40454936 40454960 -81388896 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 893 731 247 0 0 chr11 40454980 40455126 -81388730 + B1_Mus2 SINE Alu 2 147 0 7 893 248 198 11 42 chr11 40455126 40455221 -81388635 + A-rich Low_complexity Low_complexity 4 95 0 7 893 487 299 24 6 chr11 40455279 40455444 -81388412 - Lx7 LINE L1 -426 7270 7103 7 893 221 184 100 20 chr11 40455522 40455572 -81388284 - B2_Mm2 SINE B2 -140 55 2 7 893 254 176 30 18 chr11 40455584 40455656 -81388200 - L1_Mus4 LINE L1 -16 6981 6920 7 893 723 304 4 26 chr11 40455626 40455859 -81387997 - Lx2B LINE L1 -135 6865 6638 7 893 1115 122 61 6 chr11 40455833 40455860 -81387996 - L1_Mus4 LINE L1 -995 6002 5964 7 893 2564 90 29 21 chr11 40455860 40456213 -81387643 - L1_Mus3 LINE L1 0 6638 6282 7 893 3829 10 0 0 chr11 40456213 40456608 -81387248 + MTA_Mm LTR MaLR 2 396 0 7 893 2564 90 29 21 chr11 40456608 40456629 -81387227 - L1_Mus3 LINE L1 -357 6281 6261 7 893 1115 78 7 7 chr11 40456629 40456777 -81387079 - L1_Mus4 LINE L1 -673 5963 5815 7 893 2114 113 19 6 chr11 40456790 40457102 -81386754 + L1_Mm LINE L1 4414 4729 -1154 7 893 2414 205 47 22 chr11 40457102 40457656 -81386200 - Lx4B LINE L1 -408 6650 6083 7 893 9433 137 24 36 chr11 40457650 40458639 -81385217 - L1_Mur2 LINE L1 -1399 4478 3481 7 893 282 87 0 0 chr11 40458639 40458685 -81385171 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 7 893 9433 137 24 36 chr11 40458685 40459397 -81384459 - L1_Mur2 LINE L1 -2397 3480 2798 7 893 1748 182 23 48 chr11 40459392 40459789 -81384067 - L1VL4 LINE L1 -5437 865 479 7 893 27 29 0 0 chr11 40459869 40459903 -81383953 + AT_rich Low_complexity Low_complexity 1 34 0 7 893 550 272 35 35 chr11 40459956 40460097 -81383759 + ID_B1 SINE B4 81 221 -3 7 893 443 74 0 14 chr11 40460351 40460420 -81383436 + (TA)n Simple_repeat Simple_repeat 1 68 0 7 893 538 219 32 0 chr11 40461408 40461531 -81382325 - MTEb LTR MaLR -240 139 13 7 893 234 368 0 50 chr11 40461719 40461839 -81382017 - MIRc SINE MIR -125 143 30 7 893 594 273 6 42 chr11 40461845 40462013 -81381843 + RSINE1 SINE B4 4 165 0 7 893 23 33 0 0 chr11 40462013 40462043 -81381813 + AT_rich Low_complexity Low_complexity 1 30 0 7 893 282 297 91 64 chr11 40462097 40462304 -81381552 + MIR SINE MIR 50 261 -7 7 893 264 77 0 0 chr11 40463926 40463965 -81379891 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 7 893 3027 69 45 10 chr11 40463965 40464361 -81379495 - RLTR10A LTR ERVK -1 410 1 7 893 5578 58 6 14 chr11 40464361 40465080 -81378776 - RLTR10-int LTR ERVK -1 1986 1274 7 893 2143 121 29 44 chr11 40465124 40465505 -81378351 - RLTR10-int LTR ERVK -710 1277 1007 7 893 544 327 33 30 chr11 40465505 40465899 -81377957 - RLTR10-int LTR ERVK -6015 1566 1172 7 893 1134 123 21 38 chr11 40465924 40466110 -81377746 - RLTR10-int LTR ERVK -995 992 810 7 893 312 344 32 20 chr11 40466237 40466489 -81377367 - RLTR10-int LTR ERVK -6044 498 244 7 893 2006 52 0 16 chr11 40466572 40466824 -81377032 - RLTR10-int LTR ERVK -1438 549 302 7 893 2767 87 78 10 chr11 40466824 40467209 -81376647 - RLTR10A LTR ERVK 0 411 1 7 893 282 56 0 0 chr11 40467368 40467404 -81376452 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 893 851 188 28 0 chr11 40467407 40467551 -81376305 - B1_Mur3 SINE Alu 0 149 2 7 893 207 0 0 0 chr11 40467556 40467579 -81376277 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 893 304 107 0 0 chr11 40467599 40467655 -81376201 - Lx LINE L1 0 6654 6599 7 893 21 0 0 0 chr11 40468426 40468447 -81375409 + AT_rich Low_complexity Low_complexity 1 21 0 7 893 286 229 41 10 chr11 40468467 40468564 -81375292 + HAL1 LINE L1 95 194 -2313 7 893 387 0 0 0 chr11 40468886 40468929 -81374927 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 893 553 254 122 0 chr11 40469327 40469489 -81374367 - MTD LTR MaLR -245 174 18 7 893 276 261 155 84 chr11 40469569 40469711 -81374145 + HAL1 LINE L1 1669 1820 -687 7 893 2489 174 9 11 chr11 40469712 40470155 -81373701 - RMER10A LTR ERVL 0 442 1 7 893 566 268 250 0 chr11 40470293 40470461 -81373395 - B3 SINE B2 -5 211 2 7 893 377 200 11 66 chr11 40470755 40470846 -81373010 - RLTR21 LTR ERVK 0 1572 1487 7 893 2886 162 226 5 chr11 40470842 40471462 -81372394 + RMER19B LTR ERVK 130 886 -16 7 893 2318 144 49 97 chr11 40471610 40471864 -81371992 + L1VL4 LINE L1 501 751 -5551 7 893 1072 45 114 0 chr11 40471864 40471996 -81371860 + B1_Mm SINE Alu 1 147 0 7 893 2318 144 49 97 chr11 40471996 40472094 -81371762 + L1VL4 LINE L1 752 816 -5486 7 893 323 53 0 35 chr11 40472094 40472152 -81371704 - L1Md_F2 LINE L1 0 6582 6527 7 893 10781 123 21 16 chr11 40472152 40472540 -81371316 + L1VL4 LINE L1 817 1220 -2339 7 893 2835 62 18 3 chr11 40472540 40472881 -81370975 + ORR1A1 LTR MaLR 1 346 0 7 893 10781 122 20 12 chr11 40472881 40474107 -81369749 + L1VL4 LINE L1 1221 2458 -1101 7 893 1236 42 0 14 chr11 40474107 40474245 -81369611 + B1_Mm SINE Alu 2 139 -8 7 893 198 0 0 0 chr11 40474245 40474267 -81369589 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 893 10781 122 20 12 chr11 40474272 40474466 -81369390 + L1VL4 LINE L1 2459 2653 -906 7 893 217 32 0 0 chr11 40474466 40474497 -81369359 + B3A SINE B2 1 31 -167 7 893 33928 68 2 4 chr11 40474506 40479722 -81364134 + L1Md_F2 LINE L1 288 5589 -297 7 893 8716 42 2 1 chr11 40479722 40480717 -81363139 + L1Md_F2 LINE L1 5590 6585 0 7 893 866 120 68 0 chr11 40480723 40480856 -81363000 + B2_Mm2 SINE B2 20 161 -34 7 893 378 0 0 0 chr11 40480856 40480898 -81362958 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 7 893 16744 147 6 40 chr11 40480904 40481317 -81362539 + Lx2A LINE L1 2991 3402 -2475 7 893 1250 68 0 13 chr11 40481317 40481467 -81362389 + B1_Mus1 SINE Alu 1 148 0 7 893 16744 147 6 40 chr11 40481467 40482802 -81361054 + Lx2A LINE L1 3403 4629 -1248 7 893 237 33 0 0 chr11 40482802 40482832 -81361024 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 7 893 16744 123 27 35 chr11 40482832 40485191 -81358665 + Lx2A LINE L1 4630 7008 0 7 893 3039 173 22 75 chr11 40485208 40485325 -81358531 - RLTR21 LTR ERVK -244 1328 1220 7 893 351 0 0 0 chr11 40485325 40485364 -81358492 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 893 3039 173 22 75 chr11 40485364 40485529 -81358327 - RLTR21 LTR ERVK -353 1219 1094 7 893 294 95 0 0 chr11 40485529 40485571 -81358285 + (CATA)n Simple_repeat Simple_repeat 3 44 0 7 893 3039 173 22 75 chr11 40485571 40486042 -81357814 - RLTR21 LTR ERVK -479 1093 614 7 893 3711 140 29 20 chr11 40487396 40487992 -81355864 - RLTR21 LTR ERVK -940 632 32 7 893 1409 167 117 29 chr11 40488153 40488462 -81355394 + RMER10A LTR ERVL 42 377 -65 7 893 498 201 152 13 chr11 40488389 40488540 -81355316 + B2_Mm2 SINE B2 15 186 -9 7 893 390 120 0 26 chr11 40488541 40488618 -81355238 + RMER10A LTR ERVL 368 442 0 7 893 516 241 125 120 chr11 40488625 40488809 -81355047 + B3A SINE B2 1 185 -10 7 893 1265 254 102 29 chr11 40488937 40489441 -81354415 + L1MB2 LINE L1 5479 6036 -255 7 893 1014 113 28 0 chr11 40489581 40489723 -81354133 - B1_Mus1 SINE Alu -1 147 2 7 893 409 262 162 38 chr11 40489728 40489938 -81353918 + MLT2B4 LTR ERVL 1 236 -320 7 893 1208 194 146 43 chr11 40489952 40490281 -81353575 + ORR1D1 LTR MaLR 1 363 -11 7 893 273 310 11 44 chr11 40490828 40490919 -81352937 - B3A SINE B2 -16 182 95 7 893 1796 120 32 166 chr11 40491231 40491431 -81352425 + ORR1A4 LTR MaLR 2 163 -166 8 893 1178 43 50 0 chr11 40491431 40491571 -81352285 - B1_Mm SINE Alu 0 147 1 8 893 1796 120 32 166 chr11 40491571 40491749 -81352107 + ORR1A4 LTR MaLR 164 329 0 8 893 786 178 121 53 chr11 40491870 40492060 -81351796 + B3 SINE B2 1 203 -13 8 893 474 242 10 10 chr11 40492117 40492213 -81351643 - PB1D10 SINE Alu -21 96 1 8 893 516 273 98 0 chr11 40492636 40492768 -81351088 - B1_Mur1 SINE Alu -2 147 3 8 893 21 36 0 0 chr11 40492927 40492955 -81350901 + AT_rich Low_complexity Low_complexity 1 28 0 8 893 373 314 73 0 chr11 40494625 40494762 -81349094 - B1_Mur1 SINE Alu 0 149 3 8 893 368 252 40 10 chr11 40494804 40494904 -81348952 + PB1D7 SINE Alu 18 120 0 8 893 251 284 44 22 chr11 40495118 40495208 -81348648 + B3A SINE B2 2 93 -105 8 893 246 224 61 0 chr11 40495294 40495343 -81348513 + B1_Mus2 SINE Alu 21 72 -75 8 893 1044 140 214 0 chr11 40495434 40495612 -81348244 + B3 SINE B2 1 216 0 8 893 1461 84 21 0 chr11 40495665 40495855 -81348001 + B2_Mm2 SINE B2 1 194 -1 8 893 347 291 125 58 chr11 40496853 40497163 -81346693 + MLT1A1 LTR MaLR 1 371 -37 8 893 251 303 0 0 chr11 40497228 40497294 -81346562 - ID4 SINE ID -1 82 17 8 893 342 79 48 0 chr11 40497769 40497832 -81346024 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 893 263 250 16 16 chr11 40497833 40497894 -81345962 - RSINE1 SINE B4 -41 124 64 8 893 320 171 184 0 chr11 40497989 40498065 -81345791 - B1F1 SINE Alu -43 106 17 8 893 261 0 0 0 chr11 40498468 40498497 -81345359 + (A)n Simple_repeat Simple_repeat 1 29 0 8 893 784 230 0 33 chr11 40498507 40498687 -81345169 + B3 SINE B2 1 174 -42 8 893 398 173 301 26 chr11 40499010 40499123 -81344733 - B1_Mus1 SINE Alu 0 148 5 8 893 219 307 51 39 chr11 40499210 40499288 -81344568 - ID SINE ID -143 81 3 8 893 654 238 217 18 chr11 40499629 40499913 -81343943 - MTD LTR MaLR 0 419 38 8 893 773 192 7 246 chr11 40500114 40500398 -81343458 + B3 SINE B2 1 216 0 1 893 185 244 101 13 chr11 40500490 40500569 -81343287 + MER5A DNA MER1_type 46 131 -58 2 894 544 207 239 11 chr11 40501468 40501644 -81342212 - B3 SINE B2 0 216 1 3 894 220 140 0 91 chr11 40501712 40501767 -81342089 + B2_Mm1t SINE B2 78 127 -66 4 894 315 0 0 0 chr11 40501772 40501807 -81342049 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 894 537 121 0 0 chr11 40501807 40501890 -81341966 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 894 718 197 73 26 chr11 40501913 40502064 -81341792 + B3 SINE B2 52 209 -7 7 894 1421 73 10 10 chr11 40502307 40502500 -81341356 + B2_Mm2 SINE B2 2 194 -1 8 894 235 300 11 0 chr11 40503279 40503369 -81340487 + B1F SINE Alu 52 142 -7 9 894 296 48 24 0 chr11 40503379 40503421 -81340435 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 894 544 228 39 32 chr11 40503546 40503700 -81340156 + B3 SINE B2 58 212 -4 1 894 216 0 0 0 chr11 40503703 40503727 -81340129 + (A)n Simple_repeat Simple_repeat 1 24 0 1 894 445 296 0 76 chr11 40503727 40503899 -81339957 + B3A SINE B2 37 195 -3 1 894 423 236 82 0 chr11 40504288 40504398 -81339458 - PB1D9 SINE Alu -1 119 1 1 894 426 223 54 0 chr11 40504431 40504543 -81339313 + PB1D9 SINE Alu 2 119 -1 1 894 252 277 0 0 chr11 40504624 40504671 -81339185 - B1F SINE Alu -102 47 1 1 894 339 208 66 47 chr11 40504868 40504958 -81338898 + PB1D10 SINE Alu 1 94 -23 1 894 905 196 236 43 chr11 40504958 40505310 -81338546 - MTC LTR MaLR -1 420 1 1 894 339 208 66 47 chr11 40505310 40505325 -81338531 + PB1D10 SINE Alu 95 108 -9 1 894 210 71 0 0 chr11 40508636 40508664 -81335192 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 894 1228 41 0 0 chr11 40508880 40509026 -81334830 + B1_Mm SINE Alu 2 147 0 2 894 198 71 0 0 chr11 40509042 40509070 -81334786 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 894 1120 54 0 39 chr11 40509093 40509246 -81334610 + B1_Mm SINE Alu 1 147 0 2 894 302 250 56 11 chr11 40509255 40509344 -81334512 + L1ME1 LINE L1 5187 5279 -867 2 894 281 238 58 19 chr11 40509412 40509515 -81334341 - MER34 LTR ERV1 -407 135 29 2 894 1170 76 0 0 chr11 40509556 40509701 -81334155 - B1_Mus2 SINE Alu 0 147 3 2 894 429 225 125 7 chr11 40510122 40510274 -81333582 + L1ME1 LINE L1 5727 5896 -283 2 894 565 187 19 0 chr11 40510499 40510606 -81333250 - PB1D10 SINE Alu -6 111 3 2 894 552 77 0 0 chr11 40511108 40511186 -81332670 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 894 715 281 44 0 chr11 40511633 40511836 -81332020 - B3 SINE B2 0 216 5 2 894 716 285 50 47 chr11 40512211 40512624 -81331232 + RLTR11B LTR ERVK 1 423 -18 2 894 470 148 261 0 chr11 40512643 40512758 -81331098 - ORR1D1 LTR MaLR -229 145 1 3 894 2503 89 191 93 chr11 40512904 40513376 -81330480 + MURVY-LTR LTR ERV1 2 519 0 3 894 416 327 78 30 chr11 40513515 40513745 -81330111 - B4A SINE B4 -51 241 1 3 894 301 318 36 9 chr11 40513780 40513891 -81329965 - ERVL-int LTR ERVL -3769 1988 1875 3 894 940 182 21 110 chr11 40513916 40514206 -81329650 + RMER19C LTR ERVK 2 265 -346 3 894 273 201 173 13 chr11 40514269 40514425 -81329431 - RMER17C LTR ERVK -133 277 97 3 894 751 203 122 9 chr11 40514455 40514669 -81329187 + RMER19C LTR ERVK 665 902 0 3 894 439 240 157 0 chr11 40514669 40514770 -81329086 - B1_Mur1 SINE Alu -28 121 2 3 894 299 265 36 0 chr11 40515002 40515085 -81328771 + B1_Mus1 SINE Alu 1 86 -62 3 894 3410 87 64 116 chr11 40515091 40515805 -81328051 + MTB-int LTR MaLR 412 1088 -10 3 894 2773 73 3 3 chr11 40515786 40516173 -81327683 + MTB LTR MaLR 14 400 0 3 894 205 104 49 49 chr11 40516571 40516652 -81327204 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 894 1654 42 0 0 chr11 40516712 40516904 -81326952 + B2_Mm1a SINE B2 2 193 0 4 894 1441 76 16 0 chr11 40517681 40517866 -81325990 + B2_Mm2 SINE B2 2 189 -6 4 894 247 209 0 69 chr11 40517962 40518034 -81325822 + L1M4b LINE L1 108 174 -7160 4 894 307 275 28 22 chr11 40518900 40519037 -81324819 + L1_Mm LINE L1 5507 5667 -522 4 894 663 187 48 41 chr11 40519744 40519889 -81323967 - B1_Mur2 SINE Alu -2 147 2 4 894 281 370 37 0 chr11 40519919 40520027 -81323829 + B1F SINE Alu 3 114 -35 4 894 284 282 137 0 chr11 40520045 40520169 -81323687 + B1F SINE Alu 1 141 -8 4 894 319 240 40 0 chr11 40520425 40520500 -81323356 - ID4_ SINE ID -1 82 5 4 894 776 198 81 30 chr11 40520598 40520611 -81323245 - B3 SINE B2 -6 210 201 4 894 201 39 0 0 chr11 40520611 40520637 -81323219 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 4 894 776 198 81 30 chr11 40520637 40520821 -81323035 - B3 SINE B2 -16 200 3 4 894 29 0 0 0 chr11 40520960 40520989 -81322867 + AT_rich Low_complexity Low_complexity 1 29 0 5 894 447 216 86 43 chr11 40521339 40521479 -81322377 + B1F2 SINE Alu 1 146 -3 5 894 1081 37 0 43 chr11 40521783 40521924 -81321932 + B1_Mus2 SINE Alu 1 135 -12 5 894 189 107 0 0 chr11 40521947 40521975 -81321881 + (A)n Simple_repeat Simple_repeat 1 28 0 5 894 790 176 102 46 chr11 40522004 40522200 -81321656 - B3 SINE B2 -9 207 1 5 894 794 207 0 0 chr11 40522230 40522370 -81321486 + B1_Mur2 SINE Alu 2 141 -8 5 894 249 33 0 0 chr11 40522371 40522401 -81321455 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 5 894 351 323 31 0 chr11 40522679 40522809 -81321047 - B1F SINE Alu -14 135 2 5 894 259 311 44 0 chr11 40522903 40522993 -81320863 + B1F SINE Alu 18 111 -38 5 894 420 237 10 0 chr11 40524214 40524311 -81319545 - PB1D10 SINE Alu -1 116 19 5 894 22 35 0 0 chr11 40525099 40525128 -81318728 + AT_rich Low_complexity Low_complexity 1 29 0 6 894 960 87 7 0 chr11 40525172 40525310 -81318546 + B1_Mus2 SINE Alu 9 147 0 6 894 214 351 93 8 chr11 40525484 40525613 -81318243 + RSINE1 SINE B4 25 164 -1 6 894 492 233 33 41 chr11 40525648 40525769 -81318087 - PB1D9 SINE Alu 0 120 1 6 894 31 58 0 0 chr11 40525769 40525821 -81318035 + AT_rich Low_complexity Low_complexity 1 52 0 6 894 1044 83 0 0 chr11 40525828 40525961 -81317895 + B1_Mus1 SINE Alu 5 137 -11 6 894 453 36 0 0 chr11 40525961 40526016 -81317840 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 6 894 851 184 0 7 chr11 40526117 40526259 -81317597 - B1_Mus2 SINE Alu -5 142 2 6 894 189 0 0 0 chr11 40526280 40526301 -81317555 + (TTA)n Simple_repeat Simple_repeat 2 22 0 6 894 421 302 0 16 chr11 40526368 40526489 -81317367 - PB1D7 SINE Alu -1 119 1 6 894 669 110 0 0 chr11 40526507 40526607 -81317249 + (TC)n Simple_repeat Simple_repeat 2 101 0 7 894 1137 64 19 0 chr11 40526607 40526764 -81317092 - B2_Mm2 SINE B2 -35 160 1 7 894 418 271 16 25 chr11 40526780 40526901 -81316955 + RSINE1 SINE B4 9 128 -37 7 894 366 280 42 8 chr11 40527134 40527253 -81316603 - B1F SINE Alu -1 148 26 7 894 318 324 42 28 chr11 40527253 40527277 -81316579 - ID_B1 SINE B4 -1 223 79 7 894 1058 135 0 0 chr11 40527927 40528075 -81315781 - B1_Mur3 SINE Alu 0 149 2 7 894 232 268 0 0 chr11 40529026 40529082 -81314774 - ID SINE ID -166 58 3 7 894 1212 143 23 41 chr11 40529119 40529337 -81314519 - B3 SINE B2 -1 215 2 7 894 330 195 16 103 chr11 40529901 40530027 -81313829 + PB1D10 SINE Alu 2 116 -1 7 894 200 163 0 58 chr11 40530152 40530204 -81313652 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 894 579 341 25 4 chr11 40530220 40530497 -81313359 - B4A SINE B4 -8 284 2 7 894 287 258 101 45 chr11 40530530 40530729 -81313127 + L1M5 LINE L1 5630 5839 -340 8 894 1242 41 0 0 chr11 40531285 40531431 -81312425 - B1_Mus2 SINE Alu 0 147 2 8 894 427 255 60 33 chr11 40531625 40531775 -81312081 - ORR1E LTR MaLR -205 154 1 8 894 337 291 155 43 chr11 40531787 40531810 -81312046 + L1M2 LINE L1 4443 4464 -1679 8 894 2453 134 60 31 chr11 40531810 40532256 -81311600 + RMER6B LTR ERVK 1 459 -2 8 894 518 302 139 38 chr11 40532256 40532946 -81310910 + L1M2 LINE L1 4465 5242 -898 8 894 2072 116 84 0 chr11 40532957 40533302 -81310554 + ORR1B1 LTR MaLR 2 375 -19 8 894 345 169 204 32 chr11 40533304 40533484 -81310372 + L1M2 LINE L1 5271 5454 -905 8 894 1387 65 32 0 chr11 40533569 40533755 -81310101 + B2_Mm1t SINE B2 2 193 0 8 894 461 308 70 0 chr11 40533887 40534059 -81309797 + B3 SINE B2 2 185 -31 8 894 702 208 161 0 chr11 40534118 40534286 -81309570 + B3 SINE B2 5 199 -17 8 894 1066 268 55 76 chr11 40534299 40534930 -81308926 + L1MA7 LINE L1 5476 6093 -207 8 894 403 268 35 9 chr11 40535479 40535592 -81308264 + PB1D10 SINE Alu 2 117 0 9 894 744 176 28 14 chr11 40535662 40535806 -81308050 + B1_Mus1 SINE Alu 1 146 -2 9 894 315 148 148 0 chr11 40536326 40536407 -81307449 - PB1D10 SINE Alu 0 117 25 9 894 426 204 106 10 chr11 40537261 40537365 -81306491 + B1_Mur1 SINE Alu 33 146 -3 9 894 452 277 0 0 chr11 40537365 40537524 -81306332 + (CA)n Simple_repeat Simple_repeat 1 159 0 9 894 465 290 70 37 chr11 40537777 40537992 -81305864 + B4A SINE B4 28 249 -43 9 894 607 250 80 21 chr11 40538534 40538722 -81305134 - B3 SINE B2 -17 199 1 9 894 180 0 0 0 chr11 40538901 40538921 -81304935 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9 894 656 183 44 37 chr11 40538921 40539057 -81304799 - B1_Mur4 SINE Alu -13 137 1 9 894 1103 51 65 0 chr11 40539415 40539553 -81304303 + B1_Mus1 SINE Alu 2 148 0 9 894 22 0 0 0 chr11 40539747 40539769 -81304087 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 872 173 0 0 chr11 40539952 40540091 -81303765 - B1_Mus1 SINE Alu -9 139 1 1 894 217 286 15 45 chr11 40540200 40540266 -81303590 + ID4 SINE ID 20 83 0 1 894 731 289 6 0 chr11 40540295 40540475 -81303381 + B3A SINE B2 2 182 -16 1 894 1588 178 125 8 chr11 40540478 40540847 -81303009 - MTC LTR MaLR -8 413 2 1 894 376 286 15 67 chr11 40541099 40541234 -81302622 - ID_B1 SINE B4 -7 217 90 1 894 230 288 27 0 chr11 40541593 40541666 -81302190 - B3A SINE B2 -123 75 1 1 894 850 68 17 25 chr11 40541715 40541835 -81302021 - PB1D9 SINE Alu -1 119 1 1 894 217 246 0 32 chr11 40542285 40542348 -81301508 - B2_Mm2 SINE B2 -134 61 1 1 894 745 67 24 40 chr11 40542763 40542887 -81300969 - B2_Mm1a SINE B2 -2 191 70 1 894 2316 60 3 0 chr11 40542989 40543305 -81300551 - MTB LTR MaLR -83 317 1 1 894 6710 102 39 63 chr11 40543305 40544430 -81299426 - MTB-int LTR MaLR 0 1098 1 1 894 1567 81 0 9 chr11 40544430 40544653 -81299203 - MTB LTR MaLR 0 400 180 1 894 28 0 0 0 chr11 40544653 40544681 -81299175 + AT_rich Low_complexity Low_complexity 1 28 0 1 894 817 103 17 0 chr11 40544681 40544798 -81299058 - PB1D9 SINE Alu -1 119 1 1 894 329 188 155 19 chr11 40545392 40545495 -81298361 + PB1D10 SINE Alu 1 117 0 1 894 1082 106 11 37 chr11 40546206 40546393 -81297463 + B2_Mm2 SINE B2 10 191 -4 1 894 369 229 18 79 chr11 40548495 40548609 -81295247 + B1_Mur3 SINE Alu 1 107 -42 1 894 737 145 37 80 chr11 40548618 40548671 -81295185 - URR1A DNA MER1_type 0 226 186 1 894 1110 62 0 27 chr11 40548671 40548821 -81295035 + B1_Mm SINE Alu 2 147 0 1 894 737 145 37 80 chr11 40548821 40548954 -81294902 - URR1A DNA MER1_type -41 185 48 1 894 719 177 48 41 chr11 40549013 40549160 -81294696 + B1_Mur4 SINE Alu 3 150 0 1 894 1407 74 16 10 chr11 40549708 40549900 -81293956 + B2_Mm1t SINE B2 1 193 0 1 894 488 299 41 60 chr11 40550666 40550933 -81292923 + B4A SINE B4 1 262 -30 1 894 430 198 127 36 chr11 40551216 40551326 -81292530 - PB1D9 SINE Alu 0 120 1 1 894 961 114 43 0 chr11 40551393 40551533 -81292323 + B1_Mus1 SINE Alu 3 148 0 1 894 387 0 0 0 chr11 40551700 40551743 -81292113 + (CCCTAA)n Simple_repeat Simple_repeat 2 44 0 1 894 364 286 9 9 chr11 40552182 40552288 -81291568 + PB1D10 SINE Alu 1 106 -11 1 894 21 36 0 0 chr11 40553433 40553461 -81290395 + AT_rich Low_complexity Low_complexity 1 28 0 1 894 242 311 129 0 chr11 40553522 40553654 -81290202 - L1MC4 LINE L1 -163 7879 7731 1 894 440 290 112 24 chr11 40554184 40554435 -81289421 - L1MC4 LINE L1 -1022 7020 6748 1 894 723 195 48 29 chr11 40555400 40555606 -81288250 + MTD LTR MaLR 210 419 0 1 894 402 289 40 23 chr11 40555613 40555790 -81288066 - L1M4 LINE L1 -548 5636 5457 1 894 316 100 0 0 chr11 40555848 40555908 -81287948 - L1_Mus3 LINE L1 -2 6636 6577 1 894 573 187 159 0 chr11 40556065 40556270 -81287586 - L1M4 LINE L1 -748 5436 5198 1 894 348 296 70 60 chr11 40556376 40556577 -81287279 - L1MD LINE L1 -929 5217 5015 1 894 446 322 47 50 chr11 40556874 40557152 -81286704 - L1M4 LINE L1 -1214 4932 4656 1 894 1070 214 84 109 chr11 40557205 40557635 -81286221 - MT2B LTR ERVL -13 588 40 1 894 328 276 75 9 chr11 40558061 40558167 -81285689 - ID_B1 SINE B4 -3 221 109 1 894 221 303 119 32 chr11 40558167 40558183 -81285673 - B1F SINE Alu -1 144 12 1 894 495 167 169 32 chr11 40558382 40558506 -81285350 + B1_Mus2 SINE Alu 7 147 0 1 894 866 208 196 6 chr11 40558858 40559037 -81284819 - B3 SINE B2 -2 214 2 1 894 1008 187 62 5 chr11 40559135 40559329 -81284527 - B3 SINE B2 -11 205 1 1 894 1182 84 6 18 chr11 40559434 40559604 -81284252 - B2_Mm2 SINE B2 -26 169 2 1 894 380 310 32 13 chr11 40559648 40559805 -81284051 - RSINE1 SINE B4 -4 161 2 1 894 344 300 102 57 chr11 40559813 40560057 -81283799 - L1MC LINE L1 -2846 3300 3046 1 894 294 290 194 0 chr11 40560121 40560338 -81283518 - L1MD LINE L1 -3185 2961 2703 1 894 180 0 0 0 chr11 40560583 40560603 -81283253 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 894 618 236 190 4 chr11 40561255 40561513 -81282343 - MTC LTR MaLR 0 421 1 1 894 226 413 0 0 chr11 40561516 40561608 -81282248 + Lx8 LINE L1 7230 7321 -152 1 894 297 231 248 32 chr11 40561790 40561806 -81282050 - B4 SINE B4 -56 236 86 1 894 402 186 28 7 chr11 40561806 40561914 -81281942 - B1_Mur1 SINE Alu -6 143 1 1 894 379 209 56 34 chr11 40563409 40563498 -81280358 - RSINE1 SINE B4 -31 134 44 1 894 741 152 112 0 chr11 40563561 40563686 -81280170 - B1_Mur2 SINE Alu -4 145 7 1 894 346 214 263 80 chr11 40566318 40566455 -81277401 + RSINE1 SINE B4 2 163 -2 1 894 809 179 36 0 chr11 40566525 40566665 -81277191 - B1_Mur2 SINE Alu 0 149 5 1 894 335 317 51 90 chr11 40566715 40566871 -81276985 - RSINE1 SINE B4 -13 152 3 1 894 485 247 182 47 chr11 40567072 40567242 -81276614 - B3A SINE B2 -4 194 2 1 894 200 274 44 105 chr11 40567928 40568042 -81275814 + MIRb SINE MIR 121 227 -41 1 894 255 352 93 0 chr11 40568059 40568167 -81275689 + MIRb SINE MIR 121 238 -30 1 894 204 89 0 118 chr11 40569035 40569086 -81274770 + T-rich Low_complexity Low_complexity 5 49 0 1 894 909 135 27 41 chr11 40569768 40569915 -81273941 - B1_Mur2 SINE Alu -3 146 2 1 894 24 53 0 0 chr11 40569923 40569961 -81273895 + AT_rich Low_complexity Low_complexity 1 38 0 1 894 2028 151 84 15 chr11 40570133 40570476 -81273380 + ORR1B2 LTR MaLR 1 367 0 1 894 22 0 0 0 chr11 40570974 40570996 -81272860 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 234 0 0 0 chr11 40571116 40571142 -81272714 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 894 1045 268 59 7 chr11 40571145 40571434 -81272422 - Lx8 LINE L1 -358 7115 6812 1 894 2228 223 43 50 chr11 40571564 40572121 -81271735 + Lx6 LINE L1 5847 6399 -1061 1 894 2055 232 53 31 chr11 40572121 40572633 -81271223 + Lx6 LINE L1 6925 7447 -13 1 894 209 87 65 0 chr11 40572719 40572765 -81271091 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 894 323 180 0 0 chr11 40572840 40572901 -81270955 + RLTR19-int LTR ERVK 808 860 -5277 1 894 295 200 29 0 chr11 40572962 40573032 -81270824 + RLTR19-int LTR ERVK 1112 1183 -4339 1 894 192 125 0 0 chr11 40573062 40573094 -81270762 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 894 704 184 7 87 chr11 40573095 40573244 -81270612 - B1_Mur3 SINE Alu -12 137 1 1 894 1278 254 60 17 chr11 40573421 40573770 -81270086 + MTE2a LTR MaLR 2 365 -14 1 894 203 55 26 53 chr11 40573793 40573831 -81270025 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 1 894 225 94 0 0 chr11 40574339 40574371 -81269485 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 894 469 248 19 0 chr11 40574443 40574548 -81269308 - B3 SINE B2 -108 108 2 1 894 5380 67 0 15 chr11 40574771 40575440 -81268416 - L1Md_F2 LINE L1 -4 6578 5920 1 894 841 258 216 22 chr11 40575555 40575999 -81267857 - RMER20B LTR ERVK -2 625 96 1 894 529 240 11 19 chr11 40576378 40576497 -81267359 - B1F SINE Alu -1 119 1 1 894 324 222 14 0 chr11 40576702 40576774 -81267082 + B3 SINE B2 144 216 0 1 894 30 77 0 0 chr11 40576839 40576904 -81266952 + AT_rich Low_complexity Low_complexity 1 65 0 1 894 673 317 0 30 chr11 40576963 40577129 -81266727 + B3A SINE B2 1 161 -37 1 894 406 269 161 17 chr11 40577232 40577406 -81266450 + L1M2 LINE L1 5515 5713 -578 1 894 423 56 0 0 chr11 40577468 40577522 -81266334 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 894 889 228 12 39 chr11 40577574 40577789 -81266067 - B3 SINE B2 -1 194 6 1 894 306 200 90 16 chr11 40578301 40578394 -81265462 - L1MA9 LINE L1 -236 6055 5958 1 894 901 218 34 11 chr11 40578686 40578862 -81264994 - B3A SINE B2 -16 182 3 1 894 279 209 81 20 chr11 40578971 40579074 -81264782 + B1F SINE Alu 3 100 -27 1 894 207 209 0 0 chr11 40579113 40579156 -81264700 + A-rich Low_complexity Low_complexity 1 43 0 1 894 573 307 67 37 chr11 40579378 40579706 -81264150 - L1MB8 LINE L1 -25 6153 5816 1 894 718 271 36 26 chr11 40579827 40580020 -81263836 - B3A SINE B2 -2 196 2 1 894 303 234 113 52 chr11 40580022 40580216 -81263640 - L1M3 LINE L1 -1735 4411 4206 1 894 191 211 123 0 chr11 40580217 40580274 -81263582 + L4 LINE RTE 202 265 -1764 1 894 515 324 51 37 chr11 40580296 40580511 -81263345 - MLT2B2 LTR ERVL -118 397 180 1 894 585 265 69 29 chr11 40580549 40580724 -81263132 - B3A SINE B2 -14 184 3 1 894 234 303 0 13 chr11 40580739 40580816 -81263040 + CT-rich Low_complexity Low_complexity 4 79 0 1 894 264 273 21 64 chr11 40580820 40580914 -81262942 - MLT2B2 LTR ERVL -298 217 128 1 894 2380 185 74 14 chr11 40581532 40581642 -81262214 - Lx4B LINE L1 0 7058 6942 1 894 1251 70 0 0 chr11 40581642 40581900 -81261956 + (CA)n Simple_repeat Simple_repeat 1 258 0 1 894 2380 185 74 14 chr11 40581900 40582276 -81261580 - Lx4B LINE L1 -117 6941 6541 1 894 1916 188 15 36 chr11 40582275 40582667 -81261189 - Lx5 LINE L1 -573 6477 6094 1 894 29 47 0 0 chr11 40582751 40582794 -81261062 + AT_rich Low_complexity Low_complexity 1 43 0 1 894 547 269 144 50 chr11 40582937 40583278 -81260578 - MLT1G3 LTR MaLR -222 373 1 1 894 23 0 0 0 chr11 40583602 40583625 -81260231 + AT_rich Low_complexity Low_complexity 1 23 0 1 894 930 109 226 15 chr11 40583631 40583835 -81260021 + RLTR9E LTR ERVK 1 247 -162 1 894 225 0 0 0 chr11 40583966 40583991 -81259865 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 894 2670 164 107 15 chr11 40584102 40584633 -81259223 + Lx LINE L1 6080 6654 0 1 894 1142 35 7 0 chr11 40585202 40585345 -81258511 + (TCTA)n Simple_repeat Simple_repeat 2 145 0 1 894 3766 139 38 87 chr11 40585550 40586034 -81257822 - RLTR33 LTR ERVK 0 678 201 2 894 1229 55 7 0 chr11 40586034 40586180 -81257676 + B1_Mus1 SINE Alu 2 148 0 2 894 3766 139 38 87 chr11 40586180 40586398 -81257458 - RLTR33 LTR ERVK -478 200 10 2 894 3037 54 13 11 chr11 40586399 40586774 -81257082 - L1Md_F2 LINE L1 -12 6570 6195 2 894 570 254 17 0 chr11 40586908 40587026 -81256830 - RMER10B LTR ERVL -10 388 269 2 894 1750 213 94 5 chr11 40587284 40587718 -81256138 - Lx9 LINE L1 -47 7597 7125 2 894 649 239 58 0 chr11 40587719 40587857 -81255999 + B1_Mur2 SINE Alu 2 147 -2 2 894 622 154 12 139 chr11 40587950 40588116 -81255740 - Lx9 LINE L1 -505 7139 6995 2 894 402 246 63 84 chr11 40588607 40588798 -81255058 - RLTR23 LTR ERV1 0 430 244 2 894 280 323 80 35 chr11 40589430 40589642 -81254214 - MIRb SINE MIR -43 225 6 2 894 238 215 102 51 chr11 40589786 40589884 -81253972 - Tigger13a DNA MER2_type -419 352 250 2 894 302 367 30 48 chr11 40589902 40589970 -81253886 - Tigger13a DNA MER2_type -584 187 122 2 894 2343 153 76 13 chr11 40589970 40590366 -81253490 - MTC LTR MaLR 0 421 1 2 894 302 367 30 48 chr11 40590366 40590463 -81253393 - Tigger13a DNA MER2_type -650 121 25 2 894 26 0 0 0 chr11 40590831 40590857 -81252999 + AT_rich Low_complexity Low_complexity 1 26 0 2 894 5109 141 25 47 chr11 40590896 40591789 -81252067 - Lx2B LINE L1 0 7000 6128 2 894 516 264 48 0 chr11 40592463 40592588 -81251268 - B1_Mur1 SINE Alu 0 149 19 2 894 360 0 0 0 chr11 40592819 40592859 -81250997 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 894 818 139 0 22 chr11 40592861 40593045 -81250811 + GA-rich Low_complexity Low_complexity 1 180 0 2 894 447 326 117 52 chr11 40593111 40593418 -81250438 + MLT1A0 LTR MaLR 1 327 -38 2 894 508 356 83 0 chr11 40593997 40594227 -81249629 + MIR SINE MIR 13 261 -1 2 894 225 0 0 0 chr11 40594715 40594740 -81249116 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 894 1461 277 38 21 chr11 40595264 40595744 -81248112 + L1MA6 LINE L1 5339 5826 -474 2 894 880 232 49 0 chr11 40596236 40596421 -81247435 - B3A SINE B2 -2 196 3 2 894 686 321 72 28 chr11 40599208 40599405 -81244451 - MLT1C LTR MaLR -5 462 251 2 894 3224 54 15 8 chr11 40599405 40599798 -81244058 - MTA_Mm LTR MaLR 0 396 1 2 894 686 298 98 128 chr11 40599798 40599935 -81243921 - MLT1C LTR MaLR -217 250 61 2 894 557 291 0 54 chr11 40599996 40600145 -81243711 + ID_B1 SINE B4 80 220 -4 2 894 982 65 7 7 chr11 40601356 40601496 -81242360 + (GA)n Simple_repeat Simple_repeat 1 140 0 2 894 3563 142 6 11 chr11 40601498 40602047 -81241809 + Lx3B LINE L1 6421 6966 -7 2 894 759 52 0 0 chr11 40602486 40602582 -81241274 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 2 894 614 262 35 23 chr11 40602584 40602756 -81241100 - B3A SINE B2 -24 174 1 2 894 397 263 37 56 chr11 40604579 40604740 -81239116 - B3 SINE B2 0 216 59 2 894 201 178 0 22 chr11 40605062 40605108 -81238748 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 2 894 718 131 17 17 chr11 40605131 40605310 -81238546 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 894 311 341 38 43 chr11 40605781 40605825 -81238031 + MER67B LTR ERV1 282 319 -342 2 894 1223 170 8 51 chr11 40605825 40606060 -81237796 + URR1B DNA MER1_type 1 225 0 2 894 311 341 38 43 chr11 40606060 40606199 -81237657 + MER67B LTR ERV1 320 464 -197 2 894 235 348 11 0 chr11 40606427 40606516 -81237340 + MER72B LTR ERV1 436 525 -243 2 894 366 312 36 18 chr11 40606509 40606620 -81237236 + ID_B1 SINE B4 86 198 -26 2 894 180 0 0 0 chr11 40606829 40606849 -81237007 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 894 311 222 72 87 chr11 40606861 40606999 -81236857 - Lx7 LINE L1 -334 7362 7227 2 894 180 0 0 0 chr11 40607066 40607086 -81236770 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 2 894 1903 147 55 55 chr11 40607086 40607452 -81236404 - ORR1B1 LTR MaLR -27 367 2 2 894 1618 257 80 45 chr11 40607454 40607943 -81235913 - Lx7 LINE L1 -462 7234 6729 2 894 4881 54 0 10 chr11 40607948 40608531 -81235325 - L1Md_F2 LINE L1 -1 6581 6005 2 894 254 318 27 0 chr11 40608688 40608798 -81235058 - Lx8 LINE L1 -2 7471 7359 2 894 189 107 0 0 chr11 40609536 40609564 -81234292 + (T)n Simple_repeat Simple_repeat 1 28 0 2 894 8108 82 11 2 chr11 40609957 40611251 -81232605 - L1Md_F2 LINE L1 0 6582 5296 2 894 15892 27 0 0 chr11 40611245 40613972 -81229884 - L1Md_A LINE L1 0 6582 3856 2 894 238 213 164 0 chr11 40613984 40614045 -81229811 - Lx7 LINE L1 -982 6714 6644 2 894 426 242 11 0 chr11 40614045 40614136 -81229720 + 5S rRNA rRNA 1 92 -29 2 894 227 364 113 14 chr11 40614148 40614290 -81229566 + LTR31 LTR ERV1 441 596 -23 2 894 644 189 28 44 chr11 40614338 40614517 -81229339 - B3 SINE B2 0 195 19 2 894 737 241 14 58 chr11 40614555 40614762 -81229094 + B3A SINE B2 1 198 0 2 894 231 61 0 0 chr11 40615019 40615052 -81228804 + (T)n Simple_repeat Simple_repeat 1 33 0 2 894 1448 117 5 9 chr11 40615322 40615546 -81228310 - Lx2 LINE L1 0 6997 6775 2 894 6544 128 11 1 chr11 40615546 40616984 -81226872 - Lx2 LINE L1 -354 6643 5194 2 894 3640 87 40 16 chr11 40616982 40617627 -81226229 - L1VL4 LINE L1 -1708 1851 1191 2 894 37109 47 12 3 chr11 40617640 40623901 -81219955 - L1Md_T LINE L1 -1 6581 305 2 894 3271 92 11 0 chr11 40623901 40624643 -81219213 - L1VL4 LINE L1 -2351 1208 458 2 894 14974 165 13 12 chr11 40624650 40626250 -81217606 + L1_Mus4 LINE L1 2964 4585 -1298 2 894 1233 122 5 21 chr11 40626250 40626443 -81217413 - B2_Mm1a SINE B2 -3 190 1 2 894 14974 135 21 8 chr11 40626443 40628490 -81215366 + L1_Mus4 LINE L1 4586 6634 -2 2 894 352 346 84 8 chr11 40628505 40628636 -81215220 - B3A SINE B2 -56 142 2 2 894 544 231 107 0 chr11 40629181 40629302 -81214554 + B1_Mus1 SINE Alu 1 134 -14 2 894 258 268 97 14 chr11 40629422 40629494 -81214362 - B1F1 SINE Alu -66 83 6 2 894 963 122 12 6 chr11 40629511 40629684 -81214172 + (TCC)n Simple_repeat Simple_repeat 2 175 0 2 894 192 179 0 0 chr11 40629689 40629728 -81214128 + CT-rich Low_complexity Low_complexity 3 41 0 2 894 779 343 35 18 chr11 40629781 40630066 -81213790 - B4A SINE B4 0 292 3 2 894 2899 42 17 0 chr11 40630085 40630442 -81213414 - L1Md_F3 LINE L1 -14 6570 6208 2 894 659 87 0 0 chr11 40630443 40630535 -81213321 + L1Md_F3 LINE L1 6114 6205 -379 2 894 885 300 11 71 chr11 40631482 40631558 -81212298 - B4 SINE B4 -1 291 218 2 894 694 225 0 0 chr11 40631558 40631687 -81212169 - B1_Mur4 SINE Alu -19 131 3 2 894 885 300 11 71 chr11 40631687 40631890 -81211966 - B4 SINE B4 -75 217 29 2 111 7796 47 5 0 chr11 40632005 40633270 -81210586 - L1Md_F2 LINE L1 -2 6580 5306 2 895 3589 67 16 0 chr11 40633270 40633776 -81210080 + L1_Mm LINE L1 3751 4264 -1619 2 895 661 248 7 0 chr11 40633937 40634078 -81209778 - B1_Mur1 SINE Alu -7 142 1 2 895 31 76 0 0 chr11 40634171 40634237 -81209619 + AT_rich Low_complexity Low_complexity 1 66 0 2 895 6369 89 23 5 chr11 40635213 40636907 -81206949 - L1VL2 LINE L1 -1789 1826 101 2 895 651 60 0 0 chr11 40637104 40637188 -81206668 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 895 421 340 49 19 chr11 40637659 40637821 -81206035 + B3A SINE B2 1 167 -31 2 895 479 189 21 0 chr11 40637816 40637911 -81205945 - ORR1D2 LTR MaLR -273 97 1 2 895 273 198 66 33 chr11 40637938 40638037 -81205819 - Lx7 LINE L1 -28 7445 7358 2 895 222 37 0 0 chr11 40638150 40638177 -81205679 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 895 2203 275 29 26 chr11 40638256 40638809 -81205047 - Lx7 LINE L1 -442 7254 6710 2 895 495 0 0 0 chr11 40638809 40638864 -81204992 + (CCCTAA)n Simple_repeat Simple_repeat 3 57 0 2 895 2203 275 29 26 chr11 40638864 40639008 -81204848 - Lx7 LINE L1 -987 6709 6557 2 895 484 219 73 0 chr11 40639002 40639125 -81204731 + Lx7 LINE L1 5707 5838 -1858 2 895 1143 112 11 11 chr11 40639146 40639335 -81204521 - L1_Mus3 LINE L1 -3 6635 6447 2 895 1531 75 33 0 chr11 40639335 40639547 -81204309 + L1_Mus2 LINE L1 5996 6214 -352 2 895 1147 318 39 6 chr11 40639545 40639885 -81203971 + Lx7 LINE L1 5826 6176 -1520 2 895 672 45 0 0 chr11 40639885 40639973 -81203883 + (CA)n Simple_repeat Simple_repeat 2 89 0 2 895 1147 318 39 6 chr11 40639973 40640147 -81203709 + Lx7 LINE L1 6177 6356 -1340 2 895 369 0 0 0 chr11 40640407 40640448 -81203408 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 895 595 311 35 26 chr11 40640448 40640679 -81203177 - RMER15 LTR ERVL -43 532 300 2 895 423 319 120 27 chr11 40640965 40641149 -81202707 - B4 SINE B4 0 292 92 2 895 687 314 19 0 chr11 40641304 40641463 -81202393 + RSINE1 SINE B4 2 163 -2 2 895 294 350 125 22 chr11 40641313 40641497 -81202359 + B3 SINE B2 10 212 -4 2 895 3313 49 0 5 chr11 40641632 40642045 -81201811 - L1Md_F3 LINE L1 0 6584 6174 2 895 248 363 31 46 chr11 40642218 40642348 -81201508 - MLT1A LTR MaLR -245 129 2 2 895 611 233 17 0 chr11 40642532 40642652 -81201204 + B1_Mur2 SINE Alu 2 123 -26 2 895 1105 220 13 18 chr11 40642654 40642881 -81200975 + URR1A DNA MER1_type 1 226 0 2 895 213 65 0 0 chr11 40642911 40642942 -81200914 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 895 292 324 88 40 chr11 40643152 40643300 -81200556 - RSINE1 SINE B4 -8 157 3 2 895 471 234 20 27 chr11 40643400 40643549 -81200307 - RMER1B Other Other -1 1065 918 2 895 2882 141 23 6 chr11 40643579 40644063 -81199793 + L1VL2 LINE L1 126 617 -5718 2 895 669 112 95 42 chr11 40644070 40644238 -81199618 + Lx LINE L1 6478 6654 0 2 895 1465 222 9 32 chr11 40644240 40644506 -81199350 - RMER1B Other Other -149 917 655 2 895 7311 91 18 18 chr11 40644506 40645529 -81198327 - RLTR13D5 LTR ERVK 0 1023 1 2 895 1465 222 9 32 chr11 40645529 40645610 -81198246 - RMER1B Other Other -412 654 578 2 895 1211 47 0 0 chr11 40645654 40645802 -81198054 - B1_Mus1 SINE Alu 0 148 1 2 895 260 300 53 35 chr11 40645989 40646103 -81197753 - PB1D10 SINE Alu 0 117 2 2 895 1261 180 61 221 chr11 40646446 40646903 -81196953 - ORR1C2 LTR MaLR 0 384 1 2 895 21 71 0 0 chr11 40647361 40647403 -81196453 + AT_rich Low_complexity Low_complexity 1 42 0 2 895 1294 106 16 0 chr11 40648109 40648298 -81195558 + B2_Mm1t SINE B2 2 193 0 2 895 339 341 21 74 chr11 40649261 40649451 -81194405 - MIR3 SINE MIR -19 189 10 2 895 398 330 96 30 chr11 40649480 40649677 -81194179 + MIRb SINE MIR 30 239 -29 2 895 22 35 0 0 chr11 40649786 40649815 -81194041 + AT_rich Low_complexity Low_complexity 1 29 0 3 895 182 37 0 36 chr11 40649871 40649899 -81193957 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 895 473 343 22 17 chr11 40650286 40650467 -81193389 + B3A SINE B2 1 182 -16 3 895 809 141 217 26 chr11 40651399 40651588 -81192268 - URR1B DNA MER1_type 0 225 1 3 895 781 187 3 2 chr11 40652088 40652233 -81191623 - B1_Mur4 SINE Alu 0 148 3 3 895 39492 5 0 1 chr11 40652269 40659059 -81184797 - L1Md_A LINE L1 0 6582 1 3 895 3717 184 130 5 chr11 40659064 40659849 -81184007 - RMER19B LTR ERVK -19 883 1 3 895 947 300 85 11 chr11 40660158 40660522 -81183334 - MLT1C LTR MaLR -70 397 7 3 895 1819 39 17 4 chr11 40660706 40660939 -81182917 - L1Md_F3 LINE L1 -1 6583 6348 3 895 10140 11 4 0 chr11 40660939 40662154 -81181702 + L1Md_A LINE L1 4367 5586 -297 3 895 8803 16 0 0 chr11 40662154 40663150 -81180706 + L1Md_A LINE L1 5587 6582 0 3 895 802 20 29 0 chr11 40663150 40663252 -81180604 - L1Md_F3 LINE L1 -227 6357 6253 3 895 682 262 35 6 chr11 40663265 40663438 -81180418 - B3A SINE B2 -20 178 1 3 895 197 83 0 27 chr11 40663533 40663570 -81180286 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 895 784 316 122 12 chr11 40663891 40664211 -81179645 - MLT1A0 LTR MaLR -4 361 7 3 895 646 274 87 17 chr11 40665419 40665691 -81178165 - MTE2b LTR MaLR -2 377 86 3 895 487 252 0 8 chr11 40665812 40665932 -81177924 - PB1D9 SINE Alu -1 119 1 3 895 812 280 74 18 chr11 40666569 40666814 -81177042 - ID_B1 SINE B4 -23 269 6 3 895 404 273 57 68 chr11 40666868 40667045 -81176811 - Cheshire DNA MER1_type -2149 271 97 3 895 389 264 81 0 chr11 40667062 40667149 -81176707 - PB1D10 SINE Alu -23 94 1 3 895 596 295 70 105 chr11 40667934 40668302 -81175554 + ORR1E LTR MaLR 1 375 -4 3 895 239 262 112 0 chr11 40668321 40668401 -81175455 + Lx8 LINE L1 7201 7289 -184 3 895 2874 29 0 9 chr11 40668466 40668812 -81175044 + L1Md_F3 LINE L1 6226 6568 -16 3 895 313 92 33 44 chr11 40668824 40668915 -81174941 + A-rich Low_complexity Low_complexity 2 91 0 3 895 7143 156 24 4 chr11 40668917 40670357 -81173499 + Lx3C LINE L1 5497 6973 -3 3 895 1274 93 0 0 chr11 40670497 40670669 -81173187 + B2_Mm2 SINE B2 2 173 -22 3 895 344 142 0 5 chr11 40670706 40670770 -81173086 + B2_Mm2 SINE B2 48 109 -107 3 895 267 31 0 0 chr11 40670786 40670818 -81173038 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 3 895 227 178 0 0 chr11 40670928 40670973 -81172883 + CT-rich Low_complexity Low_complexity 2 46 0 3 895 591 117 0 0 chr11 40671024 40671127 -81172729 + (TG)n Simple_repeat Simple_repeat 2 104 0 3 895 1957 179 8 36 chr11 40671134 40671268 -81172588 + ORR1C1 LTR MaLR 21 155 -223 3 895 1536 43 5 0 chr11 40671268 40671453 -81172403 + B2_Mm1t SINE B2 2 187 -6 3 895 1957 179 8 36 chr11 40671453 40671572 -81172284 + ORR1C1 LTR MaLR 156 268 -110 3 895 2172 123 6 44 chr11 40671572 40671912 -81171944 + ORR1A2 LTR MaLR 1 327 0 3 895 1957 179 8 36 chr11 40671912 40672017 -81171839 + ORR1C1 LTR MaLR 269 370 -8 3 895 369 145 0 0 chr11 40672042 40672104 -81171752 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 895 19523 60 2 1 chr11 40672355 40675702 -81168154 - L1Md_F2 LINE L1 -12 6570 3226 3 895 209 362 93 33 chr11 40676360 40676574 -81167282 - L2b LINE L2 -222 3153 2927 3 895 326 202 38 12 chr11 40677433 40677513 -81166343 + PB1D10 SINE Alu 35 116 -1 3 895 1466 186 21 3 chr11 40677710 40677996 -81165860 + Lx5 LINE L1 6527 6817 -233 3 895 186 434 12 0 chr11 40678494 40678577 -81165279 - L2c LINE L2 -41 3346 3263 3 895 446 281 36 29 chr11 40678962 40679101 -81164755 - B1F2 SINE Alu -8 141 2 3 895 237 65 0 0 chr11 40679595 40679626 -81164230 + (T)n Simple_repeat Simple_repeat 1 31 0 3 895 451 305 0 2 chr11 40680328 40680453 -81163403 - B1F2 SINE Alu -7 142 20 3 895 1352 230 111 37 chr11 40680805 40681184 -81162672 + MTD LTR MaLR 13 419 0 3 895 441 246 8 0 chr11 40681377 40681499 -81162357 - Lx9 LINE L1 -959 6685 6563 3 895 388 339 86 99 chr11 40681545 40681767 -81162089 + MLT1D LTR MaLR 205 461 -44 3 895 342 0 0 0 chr11 40681787 40681825 -81162031 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 3 895 437 316 46 0 chr11 40681849 40682001 -81161855 - RSINE1 SINE B4 -2 163 5 3 895 302 194 50 0 chr11 40682906 40682972 -81160884 + MIRm SINE MIR 77 151 -125 3 895 232 303 0 53 chr11 40683189 40683283 -81160573 + CT-rich Low_complexity Low_complexity 3 91 0 3 895 1297 239 58 52 chr11 40684228 40684576 -81159280 + ORR1E LTR MaLR 5 354 -5 3 895 704 207 166 0 chr11 40684729 40684898 -81158958 - URR1A DNA MER1_type -29 197 1 3 895 288 361 72 64 chr11 40686403 40686903 -81156953 - L2 LINE L2 -445 2974 2471 3 895 233 132 0 0 chr11 40687468 40687506 -81156350 - ORR1C1 LTR MaLR 0 378 341 3 895 882 45 0 0 chr11 40687514 40687625 -81156231 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 3 895 2500 112 10 0 chr11 40687773 40688156 -81155700 - L1_Mus3 LINE L1 -4 6634 6248 3 895 294 29 0 0 chr11 40688937 40688972 -81154884 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 895 290 206 14 0 chr11 40688972 40689045 -81154811 + GA-rich Low_complexity Low_complexity 5 78 0 3 895 244 254 113 0 chr11 40689449 40689520 -81154336 + ID4 SINE ID 3 81 -2 3 895 3152 243 34 50 chr11 40689596 40690483 -81153373 + RCHARR1 DNA MER1_type 102 974 0 3 895 293 217 12 12 chr11 40690564 40690648 -81153208 + Lx2B LINE L1 6913 6996 -4 3 895 387 0 0 0 chr11 40690789 40690832 -81153024 + (TATG)n Simple_repeat Simple_repeat 1 43 0 3 895 270 0 0 0 chr11 40691965 40691995 -81151861 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 895 240 35 0 0 chr11 40692985 40693014 -81150842 + (GGA)n Simple_repeat Simple_repeat 3 31 0 3 895 993 203 14 81 chr11 40693770 40694065 -81149791 - Lx4B LINE L1 -16 7042 6768 3 895 418 252 17 42 chr11 40694467 40694587 -81149269 + PB1D10 SINE Alu 1 117 0 3 895 480 101 11 22 chr11 40694677 40694768 -81149088 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 895 28 0 0 0 chr11 40695111 40695139 -81148717 + AT_rich Low_complexity Low_complexity 1 28 0 3 895 382 359 156 7 chr11 40695380 40695655 -81148201 - HAL1 LINE L1 -2154 353 38 3 895 297 0 0 0 chr11 40695779 40695812 -81148044 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 895 279 133 0 0 chr11 40696080 40696125 -81147731 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 895 220 281 121 12 chr11 40696125 40696142 -81147714 - B4 SINE B4 -192 100 39 3 895 236 271 0 17 chr11 40696142 40696202 -81147654 - tRNA-Ala-GCY_ tRNA tRNA -8 67 9 3 895 427 264 37 12 chr11 40696412 40696573 -81147283 + Lx8 LINE L1 7306 7470 -3 3 895 216 316 38 0 chr11 40697011 40697090 -81146766 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 3 895 531 45 0 0 chr11 40697165 40697231 -81146625 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 895 566 328 77 19 chr11 40697270 40697531 -81146325 - B4A SINE B4 -8 284 9 3 895 820 256 79 24 chr11 40698746 40698998 -81144858 - MTE2b LTR MaLR -26 353 88 3 895 516 286 43 16 chr11 40698992 40699177 -81144679 - MTEa LTR MaLR -189 190 1 3 895 585 0 0 0 chr11 40699258 40699323 -81144533 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 895 404 289 0 20 chr11 40699337 40699436 -81144420 - B3A SINE B2 -97 101 5 3 895 25 0 0 0 chr11 40699901 40699926 -81143930 + AT_rich Low_complexity Low_complexity 1 25 0 3 895 627 209 92 8 chr11 40700244 40700374 -81143482 - B1_Mur2 SINE Alu -7 142 2 3 895 1828 262 81 36 chr11 40700390 40701054 -81142802 - Lx8 LINE L1 -562 6911 6218 3 895 7414 66 1 2 chr11 40701085 40702570 -81141286 - L1Md_F2 LINE L1 -2 6580 5098 3 895 559 328 52 30 chr11 40702570 40702875 -81140981 + MLT1C LTR MaLR 153 464 -3 3 895 273 29 0 0 chr11 40704316 40704350 -81139506 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 895 274 289 95 53 chr11 40705558 40705653 -81138203 - B4 SINE B4 -65 100 1 3 895 771 303 118 63 chr11 40706013 40706788 -81137068 + Lx8 LINE L1 6592 7551 -93 3 895 2907 164 111 41 chr11 40706794 40707744 -81136112 + RLTR13D1 LTR ERVK 1 1011 -12 3 895 653 66 0 11 chr11 40707815 40707907 -81135949 + (CCAA)n Simple_repeat Simple_repeat 2 92 0 3 895 330 292 67 76 chr11 40708668 40709059 -81134797 - RLTR15 LTR ERVK -239 289 14 3 895 180 0 0 0 chr11 40709429 40709449 -81134407 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 895 693 224 142 0 chr11 40710090 40710273 -81133583 + B3 SINE B2 3 211 -5 3 895 231 264 152 54 chr11 40710299 40710391 -81133465 - B4A SINE B4 -188 104 4 3 895 715 316 17 0 chr11 40710789 40711020 -81132836 - Lx8 LINE L1 -254 7219 6985 3 895 1026 237 5 0 chr11 40711953 40712160 -81131696 - B3 SINE B2 -8 208 1 3 895 1159 232 110 12 chr11 40712292 40712637 -81131219 + MTE2b LTR MaLR 1 379 0 3 895 227 182 341 83 chr11 40713034 40713166 -81130690 - MER53 DNA hAT -2 191 26 3 895 225 336 45 27 chr11 40713342 40713452 -81130404 - MTD LTR MaLR -159 260 149 3 895 1126 224 86 91 chr11 40713452 40713925 -81129931 - MT2A LTR ERVL 0 601 6 3 895 368 269 32 4 chr11 40713934 40714055 -81129801 - MTD LTR MaLR -283 138 16 3 895 510 325 64 45 chr11 40714168 40714651 -81129205 - L1MA4 LINE L1 -385 5915 5366 3 895 23 33 0 0 chr11 40714684 40714714 -81129142 + AT_rich Low_complexity Low_complexity 1 30 0 3 895 362 240 66 0 chr11 40714714 40714808 -81129048 - B1F SINE Alu 0 150 48 4 895 1159 257 82 17 chr11 40714922 40715278 -81128578 + MTE2b LTR MaLR 1 379 0 4 895 898 289 41 60 chr11 40715283 40715651 -81128205 + MT2A LTR ERVL 18 378 -155 4 895 501 17 0 0 chr11 40715662 40715720 -81128136 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 895 1180 187 280 0 chr11 40715730 40716030 -81127826 + ORR1C2 LTR MaLR 1 384 0 4 895 26 30 0 0 chr11 40716172 40716205 -81127651 + AT_rich Low_complexity Low_complexity 1 33 0 4 895 463 295 75 9 chr11 40716239 40716451 -81127405 - Lx8 LINE L1 -62 7411 7186 4 895 2756 271 60 11 chr11 40716423 40717249 -81126607 - Lx8 LINE L1 -416 7057 6191 4 895 23 33 0 0 chr11 40717288 40717318 -81126538 + AT_rich Low_complexity Low_complexity 1 30 0 4 895 3733 75 2 21 chr11 40717367 40717957 -81125899 - L1Md_F2 LINE L1 0 6582 6044 4 895 309 376 57 6 chr11 40718040 40718198 -81125658 - L1MEf LINE L1 -5761 439 274 4 895 7127 80 8 1 chr11 40719096 40720406 -81123450 - L1_Mus2 LINE L1 0 6566 5243 4 895 14756 29 2 0 chr11 40720399 40722921 -81120935 - L1Md_T LINE L1 -1 6581 4055 4 895 35725 25 7 0 chr11 40722905 40728644 -81115212 + L1Md_A LINE L1 1 5586 -297 4 895 8269 40 1 0 chr11 40728644 40729637 -81114219 + L1Md_A LINE L1 5587 6580 -2 4 895 19256 113 20 22 chr11 40729664 40733542 -81110314 - L1Md_T LINE L1 -1801 4082 214 4 895 2603 79 6 0 chr11 40733540 40734203 -81109653 - L1VL2 LINE L1 -2321 1294 627 4 895 231 36 0 0 chr11 40734493 40734521 -81109335 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 4 895 308 247 44 110 chr11 40734616 40734707 -81109149 - B1F SINE Alu 0 149 65 4 895 318 325 36 0 chr11 40734678 40734761 -81109095 - B1F SINE Alu -27 122 37 4 895 328 307 27 48 chr11 40734909 40735056 -81108800 - B1F SINE Alu -5 144 1 4 895 206 353 8 8 chr11 40735983 40736100 -81107756 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 895 180 0 0 0 chr11 40736481 40736501 -81107355 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 895 550 337 67 77 chr11 40736976 40737055 -81106801 - ID_B1 SINE B4 -17 207 144 4 895 3196 69 0 17 chr11 40737055 40737470 -81106386 - L1_Mus1 LINE L1 0 6567 6160 4 895 550 337 67 77 chr11 40737470 40737599 -81106257 - ID_B1 SINE B4 -81 143 1 4 895 2509 217 43 9 chr11 40737947 40738509 -81105347 - Lx5 LINE L1 -8 7042 6462 4 895 216 0 0 0 chr11 40738511 40738535 -81105321 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 895 197 341 22 43 chr11 40738610 40738702 -81105154 - MIR SINE MIR -75 133 44 4 895 258 32 0 0 chr11 40738998 40739029 -81104827 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 895 398 268 0 0 chr11 40739053 40739135 -81104721 - PB1D10 SINE Alu -29 88 7 4 895 2059 217 108 6 chr11 40739406 40739889 -81103967 - RMER5 LTR ERV1 -2 532 1 4 895 210 37 0 0 chr11 40740395 40740422 -81103434 + (A)n Simple_repeat Simple_repeat 1 27 0 4 895 184 354 15 0 chr11 40741402 40741467 -81102389 - MIRb SINE MIR -186 82 17 4 895 279 0 0 0 chr11 40741693 40741724 -81102132 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 895 387 0 0 0 chr11 40742222 40742265 -81101591 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 895 452 122 41 14 chr11 40742294 40742400 -81101456 - RMER6C LTR ERVK 0 756 636 4 895 373 330 96 89 chr11 40743005 40743431 -81100425 - L1M5 LINE L1 -2237 3909 3484 4 895 756 214 0 7 chr11 40743431 40743572 -81100284 - B1_Mur1 SINE Alu -7 142 3 4 895 373 330 96 89 chr11 40743572 40743664 -81100192 - L1M5 LINE L1 -2663 3483 3387 4 895 21 0 0 0 chr11 40743823 40743844 -81100012 + AT_rich Low_complexity Low_complexity 1 21 0 4 895 305 278 128 17 chr11 40743850 40743869 -81099987 - ID_B1 SINE B4 -2 222 93 4 895 440 250 0 20 chr11 40743869 40743967 -81099889 - PB1D10 SINE Alu -10 107 12 4 895 378 305 87 26 chr11 40744253 40744563 -81099293 - L1MC3 LINE L1 -405 7380 7052 4 895 1167 174 280 39 chr11 40744758 40745069 -81098787 - ORR1B1 LTR MaLR -8 386 1 4 895 212 150 50 0 chr11 40745071 40745111 -81098745 + (CATA)n Simple_repeat Simple_repeat 2 43 0 4 895 592 179 18 0 chr11 40745161 40745273 -81098583 + ORR1C2 LTR MaLR 1 114 -260 4 895 717 161 0 0 chr11 40745271 40745389 -81098467 + ORR1C2 LTR MaLR 267 384 0 4 895 1839 101 18 14 chr11 40745532 40745813 -81098043 - L1Md_F2 LINE L1 0 6582 6301 4 895 2267 36 0 0 chr11 40745813 40746094 -81097762 + L1Md_F2 LINE L1 6025 6305 -277 4 895 21 36 0 0 chr11 40746250 40746278 -81097578 + AT_rich Low_complexity Low_complexity 1 28 0 4 895 270 321 0 12 chr11 40746684 40746766 -81097090 + PB1D10 SINE Alu 23 103 -14 4 895 3011 28 0 21 chr11 40747473 40747845 -81096011 - L1Md_F2 LINE L1 0 6582 6219 4 895 180 0 0 0 chr11 40747909 40747929 -81095927 + (A)n Simple_repeat Simple_repeat 1 20 0 4 895 414 259 43 69 chr11 40748006 40748122 -81095734 + B3 SINE B2 2 114 -102 4 895 272 115 384 19 chr11 40748281 40748385 -81095471 - B2_Mm2 SINE B2 -7 188 47 4 895 448 145 118 0 chr11 40748411 40748487 -81095369 - B2_Mm1t SINE B2 -31 162 78 4 895 5298 106 35 0 chr11 40748813 40750244 -81093612 + L1VL4 LINE L1 546 2047 -3836 4 895 934 314 35 32 chr11 40750246 40750585 -81093271 - MTEa LTR MaLR -31 348 9 4 895 837 241 59 39 chr11 40750788 40750991 -81092865 - B4A SINE B4 -4 288 82 4 895 894 68 103 22 chr11 40751008 40751144 -81092712 - B1_Mm SINE Alu 0 147 1 4 895 189 0 0 0 chr11 40751615 40751636 -81092220 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 895 388 293 124 17 chr11 40752021 40752198 -81091658 - B3A SINE B2 -1 197 2 4 895 27 62 0 0 chr11 40752399 40752447 -81091409 + AT_rich Low_complexity Low_complexity 1 48 0 4 895 236 188 43 0 chr11 40752614 40752683 -81091173 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 4 895 266 148 0 0 chr11 40753044 40753098 -81090758 - Lx4B LINE L1 -1 7057 7004 4 895 1257 41 0 0 chr11 40753369 40753516 -81090340 - B1_Mm SINE Alu 0 147 1 4 895 22 35 0 0 chr11 40753535 40753564 -81090292 + AT_rich Low_complexity Low_complexity 1 29 0 4 895 701 278 26 0 chr11 40753868 40754059 -81089797 - B3A SINE B2 -1 197 2 4 895 987 140 0 0 chr11 40754082 40754253 -81089603 + (TCTCC)n Simple_repeat Simple_repeat 5 175 0 4 895 304 255 5 11 chr11 40754259 40754453 -81089403 + CT-rich Low_complexity Low_complexity 1 192 0 4 895 231 215 0 0 chr11 40755159 40755224 -81088632 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 4 895 230 225 141 0 chr11 40755420 40755491 -81088365 - B1_Mus2 SINE Alu -1 146 66 4 895 360 225 14 0 chr11 40755432 40755503 -81088353 - ID_B1 SINE B4 -19 205 134 4 895 3632 138 54 18 chr11 40755680 40756360 -81087496 - RMER17D2 LTR ERVK 0 809 105 4 895 736 241 122 10 chr11 40759118 40759315 -81084541 + B4 SINE B4 2 220 -72 4 895 348 13 58 81 chr11 40759319 40759405 -81084451 + A-rich Low_complexity Low_complexity 2 85 0 4 895 359 247 0 72 chr11 40759448 40759531 -81084325 + B4 SINE B4 216 292 0 4 895 3436 28 2 0 chr11 40759538 40759933 -81083923 + MTA_Mm LTR MaLR 1 396 0 4 895 213 273 0 29 chr11 40759935 40760003 -81083853 + (CATA)n Simple_repeat Simple_repeat 3 68 0 4 895 261 341 27 71 chr11 40760902 40761106 -81082750 + MLT1L LTR MaLR 370 580 -30 4 895 218 355 98 29 chr11 40761106 40761280 -81082576 - MIRb SINE MIR -30 238 53 4 895 369 176 0 0 chr11 40761280 40761354 -81082502 + (CATA)n Simple_repeat Simple_repeat 1 74 0 4 895 21 57 0 0 chr11 40761381 40761416 -81082440 + AT_rich Low_complexity Low_complexity 1 35 0 4 895 278 26 26 0 chr11 40761417 40761456 -81082400 + (TTTTA)n Simple_repeat Simple_repeat 5 44 0 4 895 593 257 143 0 chr11 40761456 40761631 -81082225 - B3 SINE B2 -16 200 1 4 895 2722 147 7 25 chr11 40761631 40762070 -81081786 + Lx4A LINE L1 6624 7054 -4 4 895 375 73 0 0 chr11 40763035 40763090 -81080766 + (AGGGGG)n Simple_repeat Simple_repeat 3 57 0 4 111 2412 175 101 32 chr11 40763219 40763942 -81079914 - RMER6C LTR ERVK 0 720 1 4 896 460 273 113 44 chr11 40765074 40765464 -81078392 + L1M3f LINE L1 1455 1871 -4135 4 896 324 0 0 0 chr11 40765467 40765503 -81078353 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 896 330 353 59 53 chr11 40765581 40765919 -81077937 + L1M3f LINE L1 2088 2427 -4907 4 896 455 189 0 19 chr11 40766349 40766457 -81077399 + G-rich Low_complexity Low_complexity 5 110 0 4 896 265 250 0 0 chr11 40766469 40766541 -81077315 + L1M3f LINE L1 2970 3041 -3962 4 896 31 26 0 0 chr11 40766551 40766589 -81077267 + AT_rich Low_complexity Low_complexity 1 38 0 4 896 3800 218 91 31 chr11 40766597 40767199 -81076657 - Lx6 LINE L1 -85 7375 6743 4 896 279 0 0 0 chr11 40767199 40767230 -81076626 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 896 3800 218 91 31 chr11 40767230 40767633 -81076223 - Lx6 LINE L1 -718 6742 6310 4 896 335 212 217 7 chr11 40767749 40767887 -81075969 + L1M3f LINE L1 3679 3845 -3158 4 896 6726 74 46 3 chr11 40768025 40769277 -81074579 - L1_Mus2 LINE L1 0 6566 5264 4 896 459 0 0 0 chr11 40769322 40769373 -81074483 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 896 460 289 85 4 chr11 40769395 40769631 -81074225 + L1M3f LINE L1 4174 4428 -2575 4 896 30988 34 2 0 chr11 40769844 40774468 -81069388 - L1Md_T LINE L1 0 6582 1952 4 896 28131 25 2 0 chr11 40774472 40779096 -81064760 - L1Md_T LINE L1 0 6582 1952 4 896 36387 40 0 3 chr11 40779099 40785605 -81058251 - L1Md_T LINE L1 0 6585 2 4 896 30 0 0 0 chr11 40785608 40785638 -81058218 + AT_rich Low_complexity Low_complexity 1 30 0 4 896 22 0 0 0 chr11 40788640 40788662 -81055194 + AT_rich Low_complexity Low_complexity 1 22 0 4 896 273 119 0 0 chr11 40788663 40788705 -81055151 + (T)n Simple_repeat Simple_repeat 1 42 0 4 896 315 275 66 16 chr11 40788705 40788827 -81055029 - B1F2 SINE Alu 0 149 22 4 896 387 0 0 0 chr11 40788891 40788934 -81054922 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 896 243 0 0 0 chr11 40788934 40788960 -81054896 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 896 368 158 0 0 chr11 40789492 40789549 -81054307 - U6 snRNA snRNA -1 106 50 4 896 262 355 118 73 chr11 40789773 40789977 -81053879 - LTR33A LTR ERVL -285 235 23 4 896 216 158 0 0 chr11 40790014 40790052 -81053804 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 896 183 118 56 45 chr11 40790080 40790169 -81053687 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 5 896 678 187 44 7 chr11 40791495 40791630 -81052226 + B1_Mur2 SINE Alu 2 141 -8 5 896 36 40 0 0 chr11 40791655 40791705 -81052151 + AT_rich Low_complexity Low_complexity 1 50 0 5 896 29 47 0 0 chr11 40791723 40791766 -81052090 + AT_rich Low_complexity Low_complexity 1 43 0 5 896 247 292 96 62 chr11 40792172 40792318 -81051538 + RSINE1 SINE B4 4 154 -11 5 896 222 176 0 0 chr11 40792353 40792404 -81051452 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 5 896 250 203 62 0 chr11 40792435 40792499 -81051357 - L1M LINE L1 -919 5384 5317 5 896 231 226 0 19 chr11 40792531 40792585 -81051271 + MLT2B5 LTR ERVL 1 53 -664 5 896 1298 87 0 11 chr11 40792910 40793095 -81050761 + L1Md_F2 LINE L1 6388 6570 -12 5 896 21 57 0 0 chr11 40793251 40793286 -81050570 + AT_rich Low_complexity Low_complexity 1 35 0 5 896 380 308 0 0 chr11 40794108 40794212 -81049644 - PB1D10 SINE Alu -13 104 1 5 896 796 316 76 8 chr11 40794602 40794838 -81049018 + B4 SINE B4 2 253 -39 5 896 6753 154 4 40 chr11 40794838 40796015 -81047841 - L1_Mm LINE L1 -88 5795 4665 5 896 1131 70 0 7 chr11 40796015 40796159 -81047697 - B1_Mus2 SINE Alu -2 145 3 5 896 6753 154 4 40 chr11 40796159 40796268 -81047588 - L1_Mm LINE L1 -1219 4664 4555 5 896 5186 111 63 12 chr11 40796268 40797078 -81046778 + Lx LINE L1 5802 6652 -2 5 896 204 135 0 0 chr11 40798191 40798228 -81045628 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 5 896 815 83 17 0 chr11 40798875 40798995 -81044861 + (TTTC)n Simple_repeat Simple_repeat 2 123 0 5 896 35395 45 1 43 chr11 40799001 40805324 -81038532 - L1Md_T LINE L1 -12 6570 511 5 896 238 288 100 0 chr11 40805333 40805413 -81038443 - PB1D10 SINE Alu -6 111 24 5 896 4056 248 45 25 chr11 40805498 40806690 -81037166 + RMER1A Other Other 37 1028 -2 5 896 864 145 0 65 chr11 40807843 40808042 -81035814 + L1_Mus4 LINE L1 6451 6636 0 5 896 433 307 72 8 chr11 40808985 40809246 -81034610 + L1M2 LINE L1 2401 2627 -4222 5 896 621 266 87 95 chr11 40809655 40810171 -81033685 + L1M2 LINE L1 2757 3276 -3569 5 896 377 280 135 34 chr11 40810205 40810589 -81033267 + L1M2 LINE L1 4567 4989 -1856 5 896 317 303 11 0 chr11 40810823 40810912 -81032944 - MER105 DNA DNA -114 90 1 5 896 938 250 10 5 chr11 40811254 40811463 -81032393 + B3 SINE B2 2 211 -5 5 896 977 274 174 0 chr11 40811796 40812106 -81031750 + MTE-int LTR MaLR 1094 1457 -123 5 896 316 358 87 17 chr11 40812101 40812340 -81031516 + MTEb LTR MaLR 79 361 -18 5 896 23 0 0 0 chr11 40812480 40812503 -81031353 + AT_rich Low_complexity Low_complexity 1 23 0 5 896 594 103 0 0 chr11 40812526 40812613 -81031243 + (TTTC)n Simple_repeat Simple_repeat 1 87 0 5 896 306 316 89 86 chr11 40812613 40812893 -81030963 - L1MD LINE L1 -1954 4192 3912 5 896 904 306 88 18 chr11 40812987 40813316 -81030540 - ORR1D2 LTR MaLR 0 370 19 5 896 3045 81 7 0 chr11 40813653 40814071 -81029785 + BGLII LTR ERVK 1 421 0 5 896 275 188 0 0 chr11 40814752 40814821 -81029035 + Lx6 LINE L1 7384 7452 -8 5 896 701 176 273 0 chr11 40815622 40815787 -81028069 - B3 SINE B2 -6 210 1 5 896 378 0 0 0 chr11 40816199 40816241 -81027615 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 896 345 221 26 9 chr11 40816466 40816580 -81027276 - Lx9 LINE L1 -6 7638 7523 5 896 1305 221 14 20 chr11 40816578 40816873 -81026983 - Lx9 LINE L1 -1044 6600 6308 5 896 909 60 0 0 chr11 40817346 40817463 -81026393 - B1_Mus1 SINE Alu -5 143 27 5 896 28 0 0 0 chr11 40817482 40817510 -81026346 + AT_rich Low_complexity Low_complexity 1 28 0 5 896 867 279 138 43 chr11 40818906 40819274 -81024582 - MTD LTR MaLR -16 403 1 5 896 242 258 166 79 chr11 40819299 40819438 -81024418 - Tigger13a DNA MER2_type -73 698 548 5 896 268 352 33 0 chr11 40819823 40819914 -81023942 + MER21B LTR ERV1 12 105 -758 5 896 700 347 53 13 chr11 40820207 40820511 -81023345 + MER21B LTR ERV1 436 751 -112 5 896 909 272 94 33 chr11 40820798 40821193 -81022663 + MTD LTR MaLR 1 419 0 5 896 258 156 0 22 chr11 40822034 40822080 -81021776 - B1_Mur2 SINE Alu -9 140 96 5 896 235 204 41 0 chr11 40822430 40822479 -81021377 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 896 432 182 0 0 chr11 40822504 40822592 -81021264 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 896 24 0 0 0 chr11 40822673 40822697 -81021159 + AT_rich Low_complexity Low_complexity 1 24 0 5 896 333 273 88 26 chr11 40824068 40824181 -81019675 - RLTR21 LTR ERVK -1244 328 209 5 896 305 390 79 29 chr11 40825245 40825765 -81018091 + L2 LINE L2 2001 2546 -873 5 896 228 143 0 0 chr11 40825839 40825881 -81017975 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 896 2953 88 13 13 chr11 40826335 40826587 -81017269 + MusHAL1 LINE L1 313 565 -2789 5 896 2907 77 13 8 chr11 40826587 40826981 -81016875 + MTA_Mm LTR MaLR 1 396 0 5 896 5317 92 5 3 chr11 40826981 40827878 -81015978 + MusHAL1 LINE L1 566 1463 -1890 5 896 6748 83 3 1 chr11 40827892 40829767 -81014089 + L1Md_F2 LINE L1 383 2262 -3621 5 896 27799 35 0 0 chr11 40829768 40835347 -81008509 + L1Md_T LINE L1 1 5589 -297 5 896 8881 8 2 0 chr11 40835347 40836341 -81007515 + L1Md_T LINE L1 5590 6585 0 5 896 24332 84 3 1 chr11 40836341 40839678 -81004178 + L1Md_F2 LINE L1 2241 5585 -298 5 896 7776 61 4 5 chr11 40839678 40840673 -81003183 + L1Md_F2 LINE L1 5587 6580 -2 5 896 874 239 97 78 chr11 40840706 40840964 -81002892 - ORR1D1 LTR MaLR -89 285 23 5 896 189 0 0 0 chr11 40841076 40841097 -81002759 + (T)n Simple_repeat Simple_repeat 1 21 0 5 896 4611 162 22 3 chr11 40841200 40842413 -81001443 + Lx2B LINE L1 5122 6368 -632 5 896 541 71 51 0 chr11 40842423 40842521 -81001335 - L1_Mus4 LINE L1 0 6636 6534 5 896 3442 161 54 7 chr11 40842517 40843131 -81000725 + Lx2B LINE L1 6358 7000 0 5 896 362 311 148 16 chr11 40843153 40843419 -81000437 + MLT1-int LTR MaLR 1195 1713 -22 5 896 23 0 0 0 chr11 40843572 40843595 -81000261 + AT_rich Low_complexity Low_complexity 1 23 0 5 896 936 206 108 0 chr11 40843596 40843790 -81000066 - Lx5 LINE L1 -5 7045 6831 5 896 811 109 29 0 chr11 40843897 40844071 -80999785 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 5 896 221 354 73 0 chr11 40844072 40844154 -80999702 - PB1 SINE Alu -7 120 33 5 896 22 35 0 0 chr11 40844725 40844754 -80999102 + AT_rich Low_complexity Low_complexity 1 29 0 5 896 21 36 0 0 chr11 40845477 40845505 -80998351 + AT_rich Low_complexity Low_complexity 1 28 0 5 896 21 0 0 0 chr11 40846063 40846084 -80997772 + AT_rich Low_complexity Low_complexity 1 21 0 5 896 231 380 20 20 chr11 40846091 40846193 -80997663 - RMER12 LTR ERVK -471 851 750 5 896 262 189 37 9 chr11 40846199 40846306 -80997550 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 896 6111 50 12 0 chr11 40846346 40847125 -80996731 + RLTR13C2 LTR ERVK 21 808 0 5 896 248 230 226 17 chr11 40847250 40847365 -80996491 + MER113 DNA MER1_type 47 185 -336 5 896 921 359 7 51 chr11 40847581 40848015 -80995841 + MT2A LTR ERVL 2 416 -117 5 896 414 0 0 0 chr11 40848045 40848091 -80995765 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 896 627 266 7 14 chr11 40848468 40848613 -80995243 - U1 snRNA snRNA -9 156 13 5 896 23 0 0 0 chr11 40848867 40848890 -80994966 + AT_rich Low_complexity Low_complexity 1 23 0 5 896 315 0 0 0 chr11 40848960 40848995 -80994861 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 896 1904 124 20 58 chr11 40849061 40849403 -80994453 + ORR1A4 LTR MaLR 1 329 0 5 896 430 145 12 12 chr11 40849403 40849487 -80994369 + ORR1A4-int LTR MaLR 1 84 -1879 5 896 5211 124 32 84 chr11 40849484 40850460 -80993396 + ORR1A4-int LTR MaLR 1039 1963 0 5 896 1837 123 58 10 chr11 40850460 40850773 -80993083 + ORR1A4 LTR MaLR 1 328 -1 5 896 862 306 8 13 chr11 40850953 40851188 -80992668 - MTC LTR MaLR -185 236 3 5 896 1707 130 8 129 chr11 40851226 40851598 -80992258 - ORR1A4 LTR MaLR -2 327 1 5 896 261 0 0 0 chr11 40852602 40852631 -80991225 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 896 605 259 52 24 chr11 40852664 40852874 -80990982 - B3 SINE B2 0 216 1 5 896 279 0 0 0 chr11 40853547 40853578 -80990278 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 896 1540 250 100 69 chr11 40854138 40854807 -80989049 - RMER6C LTR ERVK 0 690 1 5 896 252 280 38 62 chr11 40854828 40854908 -80988948 - B1_Mur2 SINE Alu -46 103 26 5 896 184 326 88 84 chr11 40855277 40855538 -80988318 - L2 LINE L2 -497 2922 2661 5 896 327 323 149 15 chr11 40857042 40857243 -80986613 - MIRb SINE MIR -3 265 38 5 896 401 306 31 0 chr11 40858820 40858918 -80984938 + PB1D10 SINE Alu 14 114 -3 5 896 1383 350 39 19 chr11 40859662 40860256 -80983600 + Tigger7 DNA MER2_type 1 606 -1885 5 896 1870 149 0 19 chr11 40860319 40860626 -80983230 + ORR1A4 LTR MaLR 29 329 0 5 896 523 290 131 42 chr11 40860935 40861248 -80982608 - MLT1A LTR MaLR -2 372 32 5 896 3891 47 12 18 chr11 40861369 40861870 -80981986 + L1_Mus1 LINE L1 6070 6567 0 5 896 263 331 134 16 chr11 40862094 40862281 -80981575 + MIRc SINE MIR 57 265 -3 5 896 238 246 15 15 chr11 40862518 40862531 -80981325 + polypyrimidine Low_complexity Low_complexity 56 68 0 5 896 1239 91 0 0 chr11 40862531 40862706 -80981150 + (TCCC)n Simple_repeat Simple_repeat 4 178 0 5 896 238 246 15 15 chr11 40862706 40862758 -80981098 + polypyrimidine Low_complexity Low_complexity 3 55 0 5 896 615 81 0 0 chr11 40862845 40862931 -80980925 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 5 896 351 0 0 0 chr11 40862984 40863023 -80980833 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 5 896 388 363 8 8 chr11 40864820 40864945 -80978911 + RSINE1 SINE B4 3 127 -38 5 896 348 64 0 0 chr11 40865133 40865180 -80978676 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 896 180 0 0 0 chr11 40865427 40865447 -80978409 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 5 896 5359 44 0 5 chr11 40866076 40866735 -80977121 - L1Md_F3 LINE L1 -14 6570 5915 5 896 3040 43 0 0 chr11 40866736 40867150 -80976706 + L1Md_F3 LINE L1 5540 5953 -631 5 896 695 346 16 10 chr11 40868793 40868986 -80974870 + B3A SINE B2 4 197 -1 5 896 329 293 89 0 chr11 40869179 40869302 -80974554 + Lx8 LINE L1 7254 7387 -86 5 896 243 0 0 0 chr11 40869302 40869329 -80974527 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 896 243 350 47 37 chr11 40869437 40869544 -80974312 - MLT1J LTR MaLR -303 209 102 6 896 339 269 39 0 chr11 40869652 40869730 -80974126 + RSINE1 SINE B4 61 141 -24 6 896 402 79 0 0 chr11 40869737 40869800 -80974056 + (TGAG)n Simple_repeat Simple_repeat 4 66 0 6 896 3247 46 15 0 chr11 40870052 40870442 -80973414 + MTA_Mm LTR MaLR 1 396 0 6 896 378 0 0 0 chr11 40873177 40873219 -80970637 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 896 809 249 34 10 chr11 40874147 40874354 -80969502 + B3 SINE B2 2 213 -3 6 896 1032 349 105 16 chr11 40874931 40875744 -80968112 - L1MC2 LINE L1 -29 6315 5431 6 896 4704 66 2 0 chr11 40876373 40876964 -80966892 - L1_Mus2 LINE L1 -2 6564 5973 6 896 508 150 9 9 chr11 40877683 40877797 -80966059 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 896 596 303 60 36 chr11 40877809 40878090 -80965766 - B4A SINE B4 -3 289 2 6 896 294 259 98 36 chr11 40878799 40878911 -80964945 + L2c LINE L2 3268 3386 -1 6 896 624 27 0 0 chr11 40879957 40880031 -80963825 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 6 896 4596 128 17 4 chr11 40880034 40880748 -80963108 - Lx LINE L1 -6 6648 5926 6 896 1259 42 24 0 chr11 40880748 40880914 -80962942 + Lx LINE L1 5721 5890 -764 6 896 457 331 16 82 chr11 40881178 40881372 -80962484 + B3 SINE B2 26 206 -10 6 896 218 287 21 0 chr11 40881372 40881466 -80962390 + (CA)n Simple_repeat Simple_repeat 2 97 0 6 896 228 290 0 28 chr11 40881532 40881603 -80962253 + L2c LINE L2 3358 3426 0 6 896 5625 129 9 61 chr11 40881766 40882513 -80961343 + Lx LINE L1 418 1158 -5476 6 896 225 0 0 0 chr11 40882513 40882538 -80961318 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 896 16637 169 8 22 chr11 40882538 40884328 -80959528 + Lx LINE L1 1159 2910 -2976 6 896 6124 46 0 0 chr11 40884328 40885070 -80958786 + L1Md_F2 LINE L1 5840 6581 -1 6 896 16637 174 7 17 chr11 40885070 40886638 -80957218 + Lx LINE L1 2911 4442 -1444 6 896 6488 114 29 42 chr11 40886609 40887849 -80956007 + Lx LINE L1 5430 6654 0 6 896 692 141 0 8 chr11 40887852 40887974 -80955882 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 6 896 735 130 0 25 chr11 40889145 40889263 -80954593 + B1_Mur3 SINE Alu 35 149 0 6 896 736 78 0 17 chr11 40889393 40889510 -80954346 + L1_Mus2 LINE L1 6427 6541 -25 6 896 306 73 0 0 chr11 40889510 40889551 -80954305 + (T)n Simple_repeat Simple_repeat 1 41 0 6 896 2481 68 0 0 chr11 40889551 40889875 -80953981 - L1Md_F2 LINE L1 -209 6373 6050 6 896 181 278 56 0 chr11 40889970 40890024 -80953832 - MIRb SINE MIR -84 184 128 6 896 2079 171 38 13 chr11 40890805 40891202 -80952654 + MTB_Mm LTR MaLR 1 407 0 6 896 22 0 0 0 chr11 40891222 40891244 -80952612 + AT_rich Low_complexity Low_complexity 1 22 0 6 896 537 215 83 104 chr11 40891370 40891402 -80952454 - B2_Mm2 SINE B2 -6 189 154 6 896 375 23 0 0 chr11 40891402 40891446 -80952410 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 896 665 215 83 104 chr11 40891446 40891605 -80952251 - B3A SINE B2 -42 156 2 6 896 22 35 0 0 chr11 40892869 40892898 -80950958 + AT_rich Low_complexity Low_complexity 1 29 0 6 896 1523 54 0 0 chr11 40892898 40893083 -80950773 - B2_Mm1a SINE B2 -7 186 2 6 896 21 57 0 0 chr11 40893211 40893246 -80950610 + AT_rich Low_complexity Low_complexity 1 35 0 6 896 1780 152 37 42 chr11 40893246 40893623 -80950233 - Lx3A LINE L1 0 6981 6607 6 896 1928 92 7 0 chr11 40893625 40893908 -80949948 + Lx3A LINE L1 6344 6628 -353 6 13 33170 53 2 10 chr11 40894050 40899240 -80944616 + L1Md_F2 LINE L1 440 5586 -297 6 897 7888 52 3 3 chr11 40899240 40900235 -80943621 + L1Md_F2 LINE L1 5587 6581 -1 6 897 267 168 24 16 chr11 40900258 40900354 -80943502 + L1M2 LINE L1 5116 5220 -923 6 897 22 0 0 0 chr11 40901242 40901264 -80942592 + AT_rich Low_complexity Low_complexity 1 22 0 6 897 2614 44 6 223 chr11 40902014 40902512 -80941344 - RLTR10 LTR ERVK 0 390 1 6 897 11158 30 1 40 chr11 40902514 40903988 -80939868 - RLTR10-int LTR ERVK -3 1984 568 6 897 4077 64 28 6 chr11 40904096 40904722 -80939134 - RLTR10-int LTR ERVK -1381 606 41 6 897 2626 41 6 223 chr11 40904732 40905230 -80938626 - RLTR10 LTR ERVK 0 390 1 6 897 6822 25 1 37 chr11 40905334 40906365 -80937491 + L1Md_A LINE L1 452 1438 -4445 6 897 35681 16 2 1 chr11 40906355 40910770 -80933086 + L1Md_A LINE L1 1166 5586 -297 6 897 8664 20 0 0 chr11 40910770 40911764 -80932092 + L1Md_A LINE L1 5587 6580 -2 6 897 37639 26 3 6 chr11 40911823 40918079 -80925777 - L1Md_A LINE L1 0 6582 376 6 897 36235 31 0 0 chr11 40918776 40925411 -80918445 - L1Md_T LINE L1 0 6585 1 6 897 27 0 0 0 chr11 40925473 40925500 -80918356 + AT_rich Low_complexity Low_complexity 1 27 0 6 897 257 315 43 30 chr11 40927294 40927614 -80916242 + L1M2 LINE L1 2138 2460 -4389 6 897 718 264 106 58 chr11 40928399 40928861 -80914995 + L1M2 LINE L1 3985 4468 -2374 6 897 32509 77 5 1 chr11 40929067 40935242 -80908614 - L1Md_F2 LINE L1 0 6582 382 6 897 236 337 11 23 chr11 40936554 40936642 -80907214 - MIR3 SINE MIR -2 206 120 6 897 1418 240 318 31 chr11 40936832 40937199 -80906657 - RLTR40 LTR ERVK -53 764 298 6 897 198 0 0 0 chr11 40937199 40937221 -80906635 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 897 1418 234 83 38 chr11 40937221 40937394 -80906462 - RLTR40 LTR ERVK -520 297 112 6 897 189 0 0 0 chr11 40937406 40937427 -80906429 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 6 897 1528 212 44 19 chr11 40938276 40938641 -80905215 + ORR1D1 LTR MaLR 1 374 0 6 897 3983 135 5 6 chr11 40938641 40939305 -80904551 - L1_Mus4 LINE L1 -80 5803 5141 6 897 5045 104 48 16 chr11 40939305 40939461 -80904395 + L1_Mus4 LINE L1 5815 5970 -666 6 897 2965 38 0 0 chr11 40939461 40939807 -80904049 - ORR1A0 LTR MaLR 0 346 1 6 897 5045 104 48 16 chr11 40939807 40940441 -80903415 + L1_Mus4 LINE L1 5971 6630 -6 6 897 305 332 78 50 chr11 40940675 40940699 -80903157 - MLT1L LTR MaLR -50 560 536 6 897 1970 195 39 12 chr11 40940699 40941109 -80902747 + MTC LTR MaLR 1 421 0 6 897 305 332 78 50 chr11 40941109 40941303 -80902553 - MLT1L LTR MaLR -75 535 336 6 897 5252 59 8 5 chr11 40941517 40942185 -80901671 + L1Md_F2 LINE L1 5913 6582 0 6 897 207 0 0 0 chr11 40942207 40942230 -80901626 + (A)n Simple_repeat Simple_repeat 1 23 0 6 897 507 293 61 65 chr11 40942921 40943263 -80900593 + MTEa LTR MaLR 5 379 0 6 897 220 281 121 22 chr11 40943421 40943512 -80900344 - MIRc SINE MIR -127 141 42 6 897 819 263 13 112 chr11 40943559 40943935 -80899921 - Lx6 LINE L1 -2 7458 7120 6 897 285 77 0 0 chr11 40943935 40943974 -80899882 - Lx7 LINE L1 -854 6842 6804 6 897 34 0 0 0 chr11 40944098 40944132 -80899724 + AT_rich Low_complexity Low_complexity 1 34 0 6 897 1234 124 168 0 chr11 40945158 40945384 -80898472 + RMER6A LTR ERVK 1 264 -492 6 897 13932 29 46 0 chr11 40945384 40947420 -80896436 - RLTR6-int LTR ERV1 -5635 2143 22 6 897 2318 113 225 27 chr11 40947420 40947895 -80895961 - RLTR6_Mm LTR ERV1 -49 605 37 6 897 235 218 196 56 chr11 40947897 40948004 -80895852 - RLTR6_Mm LTR ERV1 -532 122 1 6 897 413 267 78 10 chr11 40948011 40948113 -80895743 - RSINE1 SINE B4 -44 121 13 6 897 3732 46 0 2 chr11 40948140 40948599 -80895257 - L1Md_F3 LINE L1 0 6584 6127 6 897 901 262 68 53 chr11 40948991 40949387 -80894469 - L1MB1 LINE L1 -3 6165 5783 6 897 345 47 0 0 chr11 40949387 40949430 -80894426 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 897 901 262 68 53 chr11 40949430 40949504 -80894352 - L1MB1 LINE L1 -386 5782 5688 6 897 544 50 25 0 chr11 40949504 40949584 -80894272 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 6 897 244 263 0 0 chr11 40949584 40949641 -80894215 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 897 363 388 50 6 chr11 40950896 40951057 -80892799 - B4A SINE B4 -123 169 2 6 897 24 53 0 0 chr11 40951095 40951133 -80892723 + AT_rich Low_complexity Low_complexity 1 38 0 6 897 450 0 0 0 chr11 40951256 40951306 -80892550 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 6 897 234 0 0 0 chr11 40951323 40951349 -80892507 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6 897 1066 90 0 20 chr11 40951443 40951577 -80892279 + B1_Mus2 SINE Alu 4 137 -10 6 897 351 0 0 0 chr11 40951577 40951616 -80892240 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 6 897 1066 90 0 20 chr11 40951616 40951628 -80892228 + B1_Mus2 SINE Alu 138 147 0 6 897 414 0 0 0 chr11 40951780 40951826 -80892030 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 897 311 307 131 22 chr11 40952006 40952189 -80891667 - L2 LINE L2 -806 2613 2411 6 897 213 65 0 0 chr11 40952219 40952250 -80891606 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 897 562 265 22 11 chr11 40952746 40952929 -80890927 - Lx2B LINE L1 -4 6996 6812 6 897 456 51 0 0 chr11 40952932 40952991 -80890865 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 897 214 218 22 33 chr11 40953057 40953147 -80890709 + (TTATA)n Simple_repeat Simple_repeat 3 91 0 6 897 585 326 37 16 chr11 40953152 40953342 -80890514 - B3A SINE B2 -1 197 4 6 897 198 71 0 0 chr11 40953524 40953552 -80890304 + (CAT)n Simple_repeat Simple_repeat 2 29 0 6 897 1124 64 19 0 chr11 40953681 40953837 -80890019 + (TATATG)n Simple_repeat Simple_repeat 4 162 0 6 897 870 237 74 77 chr11 40954064 40954388 -80889468 + RMER20B LTR ERVK 90 412 -215 6 897 257 197 0 13 chr11 40955810 40955887 -80887969 + GA-rich Low_complexity Low_complexity 2 77 0 6 897 242 207 0 0 chr11 40956210 40956268 -80887588 + T-rich Low_complexity Low_complexity 2 59 0 6 897 192 382 48 18 chr11 40957813 40957981 -80885875 + L2 LINE L2 2845 3017 -402 6 897 316 350 89 51 chr11 40959035 40959270 -80884586 - MLT1K LTR MaLR -18 577 334 6 897 307 365 29 0 chr11 40959430 40959534 -80884322 - MER45R DNA Tip100 -3 1578 1472 6 897 2792 201 52 63 chr11 40960340 40960759 -80883097 + RLTR40 LTR ERVK 2 449 -368 6 897 4103 73 0 28 chr11 40960759 40961335 -80882521 + L1Md_F2 LINE L1 6021 6580 -2 6 897 2792 201 52 63 chr11 40961335 40961630 -80882226 + RLTR40 LTR ERVK 450 708 -109 6 897 21 0 0 0 chr11 40961768 40961789 -80882067 + AT_rich Low_complexity Low_complexity 1 21 0 6 897 1017 72 7 13 chr11 40962554 40962708 -80881148 + (TCTCC)n Simple_repeat Simple_repeat 3 155 0 6 897 4493 132 6 29 chr11 40962718 40963449 -80880407 - Lx2A1 LINE L1 -5 7003 6290 6 897 910 131 41 12 chr11 40963453 40963623 -80880233 + MusHAL1 LINE L1 425 599 -2113 6 897 471 162 83 28 chr11 40963653 40963761 -80880095 - RMER1B Other Other -4 1062 949 6 897 568 118 32 0 chr11 40963761 40963854 -80880002 - RMER1A Other Other -254 776 681 6 897 334 212 20 10 chr11 40963854 40963954 -80879902 - Lx6 LINE L1 -6 7454 7354 6 897 21 71 0 0 chr11 40964026 40964068 -80879788 + AT_rich Low_complexity Low_complexity 1 42 0 6 897 887 230 150 70 chr11 40964585 40964912 -80878944 + ORR1D2 LTR MaLR 10 362 -8 7 897 22 35 0 0 chr11 40965346 40965375 -80878481 + AT_rich Low_complexity Low_complexity 1 29 0 7 897 1023 207 184 33 chr11 40966297 40966661 -80877195 + MTD LTR MaLR 1 419 0 7 897 313 329 107 12 chr11 40967820 40967989 -80875867 + MIR3 SINE MIR 19 203 -5 7 897 481 307 146 41 chr11 40968641 40969195 -80874661 - L1MC3 LINE L1 -285 7500 6898 7 897 5445 109 27 4 chr11 40969195 40970012 -80873844 - Lx LINE L1 -1 6653 5818 7 897 481 307 146 41 chr11 40970012 40970163 -80873693 - L1MC3 LINE L1 -888 6897 6721 7 897 617 266 46 53 chr11 40970207 40970562 -80873294 - RLTR11A LTR ERVK -18 510 168 7 897 1405 100 228 25 chr11 40970563 40970839 -80873017 - Lx3C LINE L1 -135 6841 6510 7 897 1160 238 99 75 chr11 40971094 40971515 -80872341 - RLTR11A LTR ERVK -140 437 1 7 897 501 309 164 43 chr11 40971560 40971982 -80871874 - L1MC3 LINE L1 -1121 6664 6192 7 897 256 395 28 0 chr11 40973040 40973149 -80870707 + RMER12 LTR ERVK 739 850 -472 7 897 516 158 0 0 chr11 40973161 40973256 -80870600 + (CA)n Simple_repeat Simple_repeat 2 96 0 7 897 635 0 13 0 chr11 40973404 40973479 -80870377 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 7 897 372 311 0 0 chr11 40973552 40973671 -80870185 - Lx9 LINE L1 -319 7325 7207 7 897 367 355 118 39 chr11 40974833 40975273 -80868583 - L2a LINE L2 -23 3403 2929 7 897 477 0 0 0 chr11 40976417 40976470 -80867386 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 897 774 32 0 0 chr11 40976470 40976562 -80867294 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 897 376 256 46 11 chr11 40976580 40976667 -80867189 - B4 SINE B4 -35 257 168 7 897 183 42 0 0 chr11 40976905 40976929 -80866927 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 7 897 257 298 56 37 chr11 40977191 40977299 -80866557 - PB1D10 SINE Alu -7 110 1 7 897 321 337 62 36 chr11 40977588 40977619 -80866237 - L2a LINE L2 -2222 1197 1165 7 897 899 34 8 0 chr11 40977619 40977738 -80866118 + (GA)n Simple_repeat Simple_repeat 1 120 0 7 897 321 337 62 36 chr11 40977738 40978011 -80865845 - L2a LINE L2 -2255 1164 886 7 897 299 246 0 0 chr11 40978025 40978086 -80865770 - B1F1 SINE Alu -88 61 1 7 897 960 214 49 40 chr11 40978627 40978851 -80865005 - URR1A DNA MER1_type 0 226 1 7 897 35 24 0 0 chr11 40981117 40981159 -80862697 + AT_rich Low_complexity Low_complexity 1 42 0 7 897 7839 35 3 2 chr11 40981263 40982496 -80861360 - L1Md_F3 LINE L1 -14 6570 5337 7 897 898 246 152 52 chr11 40982562 40983042 -80860814 + RLTR11A LTR ERVK 1 528 0 7 897 361 295 88 24 chr11 40983216 40983341 -80860515 - RSINE1 SINE B4 -29 136 4 7 897 587 170 189 5 chr11 40984397 40984496 -80859360 + Lx9 LINE L1 7384 7500 -144 7 897 369 0 0 0 chr11 40984496 40984537 -80859319 + (TATG)n Simple_repeat Simple_repeat 4 44 0 7 897 587 170 189 5 chr11 40984537 40984638 -80859218 + Lx9 LINE L1 7501 7621 -23 7 897 274 191 32 0 chr11 40985080 40985143 -80858713 + Lx6 LINE L1 7371 7435 -25 7 897 284 348 18 0 chr11 40985198 40985310 -80858546 + PB1D10 SINE Alu 1 114 -3 7 897 2118 97 43 3 chr11 40985458 40985780 -80858076 - L1_Mus3 LINE L1 -6 6632 6298 7 897 1695 170 152 9 chr11 40985946 40986374 -80857482 + Lx LINE L1 6157 6645 -9 7 897 1777 204 35 73 chr11 40986823 40987373 -80856483 + RMER6C LTR ERVK 1 529 -161 7 897 2952 59 0 11 chr11 40987596 40987974 -80855882 + L1_Mus1 LINE L1 6194 6567 0 7 897 499 284 106 57 chr11 40988374 40988639 -80855217 - B4 SINE B4 -12 280 3 7 897 210 224 0 34 chr11 40988990 40989078 -80854778 + CT-rich Low_complexity Low_complexity 3 87 0 7 897 516 222 6 25 chr11 40989607 40989764 -80854092 + Lx3C LINE L1 6821 6974 -2 7 897 24 0 0 0 chr11 40989765 40989789 -80854067 + AT_rich Low_complexity Low_complexity 1 24 0 7 897 383 303 45 9 chr11 40990972 40991195 -80852661 + ERVL-B4-int LTR ERVL 5482 5712 -2 7 897 390 255 20 20 chr11 40991261 40991361 -80852495 + MLT2B2 LTR ERVL 87 186 -531 7 897 928 271 160 45 chr11 40991503 40991835 -80852021 + MTE2b LTR MaLR 1 370 -9 7 897 297 68 0 0 chr11 40992063 40992107 -80851749 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 7 897 446 351 23 42 chr11 40992454 40992713 -80851143 + MLT2B2 LTR ERVL 258 511 -4 7 897 26 0 0 0 chr11 40992933 40992959 -80850897 + AT_rich Low_complexity Low_complexity 1 26 0 7 897 264 345 0 22 chr11 40993015 40993104 -80850752 - RSINE1 SINE B4 -12 153 67 7 897 207 392 13 0 chr11 40993532 40993611 -80850245 + MIRb SINE MIR 1 83 -185 7 897 322 291 109 49 chr11 40993615 40993799 -80850057 - MIRb SINE MIR -2 266 72 7 897 270 245 67 29 chr11 40994062 40994167 -80849689 + Charlie8 DNA MER1_type 102 210 -2218 7 897 787 217 139 0 chr11 40994395 40994575 -80849281 - B3 SINE B2 -10 206 2 7 897 1130 251 107 23 chr11 40994649 40994990 -80848866 + MTD LTR MaLR 6 380 -39 7 897 297 0 0 0 chr11 40995976 40996009 -80847847 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 7 897 428 348 38 46 chr11 40996305 40996543 -80847313 - B4A SINE B4 0 292 57 7 897 710 282 136 55 chr11 40996657 40997002 -80846854 + MTEb LTR MaLR 7 379 0 7 897 470 189 10 31 chr11 40997209 40997307 -80846549 + MTC LTR MaLR 3 98 -323 7 897 342 0 0 0 chr11 40997320 40997358 -80846498 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 897 589 215 38 41 chr11 40997547 40997790 -80846066 + Lx4B LINE L1 6682 7006 -52 7 897 4108 172 23 21 chr11 40997804 40998619 -80845237 - RMER12 LTR ERVK -149 1255 1 7 897 509 242 114 10 chr11 40998619 40998855 -80845001 - Lx6 LINE L1 -566 6894 6698 7 897 863 287 62 7 chr11 40998874 40999162 -80844694 - Lx6 LINE L1 -1295 6165 5862 7 897 1577 212 12 11 chr11 40999162 40999491 -80844365 + MTC LTR MaLR 61 421 0 7 897 214 245 57 0 chr11 40999535 40999588 -80844268 + PB1D7 SINE Alu 59 114 -6 7 897 2007 186 20 6 chr11 41002506 41002858 -80840998 - ORR1B2 LTR MaLR -10 357 1 1 897 419 306 144 33 chr11 41003450 41003693 -80840163 + B4 SINE B4 19 288 -4 2 897 328 67 0 0 chr11 41004676 41004721 -80839135 + RMER19C LTR ERVK 3 47 -564 3 897 2028 206 8 26 chr11 41004978 41005362 -80838494 + RMER19C LTR ERVK 235 611 0 3 897 38 39 0 0 chr11 41005725 41005777 -80838079 + AT_rich Low_complexity Low_complexity 1 52 0 4 897 403 341 93 27 chr11 41006950 41007209 -80836647 + MLT1A0 LTR MaLR 23 298 -67 5 897 331 326 164 20 chr11 41007895 41008249 -80835607 - Charlie4a DNA MER1_type -97 411 7 6 897 402 74 0 0 chr11 41008339 41008393 -80835463 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 897 320 304 0 0 chr11 41008399 41008468 -80835388 - RSINE1 SINE B4 -19 146 78 8 897 478 339 74 32 chr11 41009736 41009925 -80833931 + ORR1E LTR MaLR 1 197 -162 9 897 450 0 0 0 chr11 41010025 41010075 -80833781 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 897 251 0 59 0 chr11 41010885 41010919 -80832937 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1 897 373 342 39 9 chr11 41010945 41011175 -80832681 + L1M3 LINE L1 5417 5653 -530 1 897 28 0 0 0 chr11 41011478 41011506 -80832350 + AT_rich Low_complexity Low_complexity 1 28 0 1 897 278 216 26 39 chr11 41012096 41012173 -80831683 - Lx8 LINE L1 -1546 5927 5852 1 897 230 81 27 0 chr11 41012173 41012210 -80831646 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1 897 1116 23 0 0 chr11 41012210 41012341 -80831515 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 1 897 752 74 9 0 chr11 41012348 41012456 -80831400 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 1 897 215 133 22 0 chr11 41012573 41012618 -80831238 + (CAA)n Simple_repeat Simple_repeat 1 46 0 1 897 253 215 0 60 chr11 41012621 41012705 -80831151 + A-rich Low_complexity Low_complexity 6 84 0 1 897 1095 310 46 15 chr11 41012736 41013148 -80830708 - Lx7 LINE L1 -361 7335 6911 2 897 1452 197 69 34 chr11 41013242 41013562 -80830294 + Lx6 LINE L1 6235 6565 -895 2 897 442 304 21 21 chr11 41013575 41013716 -80830140 + B1F SINE Alu 3 143 -6 2 897 3156 80 32 4 chr11 41014829 41015292 -80828564 + L1_Mus3 LINE L1 6163 6638 0 2 897 1303 321 166 11 chr11 41015348 41016015 -80827841 + Lx8 LINE L1 6657 7427 -46 2 897 1000 274 128 52 chr11 41016147 41016701 -80827155 - L1M2 LINE L1 -3276 3569 2968 2 897 774 0 0 0 chr11 41016701 41016787 -80827069 + (TTTC)n Simple_repeat Simple_repeat 4 89 0 2 897 1202 41 7 0 chr11 41016788 41016934 -80826922 - B1_Mus2 SINE Alu 0 147 1 2 897 1000 274 128 52 chr11 41016934 41017031 -80826825 - L1M2 LINE L1 -3878 2967 2866 2 897 214 307 76 51 chr11 41017246 41017325 -80826531 - ID4 SINE ID -1 82 2 2 897 243 319 21 0 chr11 41017882 41017976 -80825880 - L1M2 LINE L1 -4385 2464 2369 2 897 441 0 0 0 chr11 41018140 41018189 -80825667 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 897 267 93 0 0 chr11 41018189 41018231 -80825625 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 897 1170 143 26 18 chr11 41018255 41018483 -80825373 - Lx3_Mus LINE L1 -2 7007 6778 3 897 933 302 9 0 chr11 41018488 41018710 -80825146 - B4 SINE B4 -66 226 3 3 897 23 68 0 0 chr11 41020638 41020682 -80823174 + AT_rich Low_complexity Low_complexity 1 44 0 3 897 548 287 47 53 chr11 41021557 41021915 -80821941 - L1MA4 LINE L1 -74 6226 5864 3 897 251 280 90 67 chr11 41022635 41022769 -80821087 - B4A SINE B4 -148 144 8 3 897 183 100 0 0 chr11 41023484 41023514 -80820342 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 897 24 0 0 0 chr11 41023947 41023971 -80819885 + AT_rich Low_complexity Low_complexity 1 24 0 3 897 3783 103 23 4 chr11 41023972 41024530 -80819326 - Lx3A LINE L1 -6 6975 6407 3 897 244 246 0 0 chr11 41025018 41025075 -80818781 + BC1_Mm scRNA scRNA 15 71 -81 3 112 502 325 42 14 chr11 41025503 41025715 -80818141 - MER20 DNA MER1_type -1 218 1 4 898 362 21 21 0 chr11 41025973 41026020 -80817836 + (TAA)n Simple_repeat Simple_repeat 1 48 0 4 898 354 45 0 0 chr11 41026418 41026462 -80817394 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 898 336 64 0 0 chr11 41026468 41026515 -80817341 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 898 406 292 9 19 chr11 41026517 41026625 -80817231 - B3A SINE B2 -22 176 70 4 898 297 0 0 0 chr11 41027735 41027768 -80816088 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 898 228 44 0 82 chr11 41027768 41027817 -80816039 + (TTAGGG)n Simple_repeat Simple_repeat 1 45 0 4 898 219 69 0 0 chr11 41027828 41027857 -80815999 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 898 2539 217 112 67 chr11 41027896 41028759 -80815097 + RLTR13D6 LTR ERVK 1 902 0 4 898 656 315 114 50 chr11 41028867 41029208 -80814648 + MLT1A0 LTR MaLR 1 363 -2 4 898 915 265 72 137 chr11 41030010 41030412 -80813444 + MTE2a LTR MaLR 1 376 -3 5 898 391 308 24 32 chr11 41031167 41031291 -80812565 - B1F SINE Alu -8 141 19 5 898 251 396 13 40 chr11 41031683 41031833 -80812023 - L2 LINE L2 -583 2836 2691 5 898 4032 67 44 15 chr11 41032200 41032744 -80811112 + LTRIS2 LTR ERV1 5 564 0 5 898 652 126 56 13 chr11 41032897 41033063 -80810793 + RLTR1B-int LTR ERV1 63 288 -3011 5 898 803 153 72 88 chr11 41033414 41033608 -80810248 + RMER16-int LTR ERVK 141 331 -5075 5 898 4321 134 61 17 chr11 41033594 41034317 -80809539 + RMER16-int LTR ERVK 690 1444 -3962 5 898 9065 149 79 48 chr11 41034308 41036977 -80806879 + RLTR1B-int LTR ERV1 760 4146 -917 5 898 933 231 17 13 chr11 41037062 41037295 -80806561 + RLTR1B-int LTR ERV1 4788 5021 -42 5 898 4001 69 44 11 chr11 41037298 41037840 -80806016 + LTRIS2 LTR ERV1 5 564 0 5 898 558 298 69 35 chr11 41038144 41038405 -80805451 + Lx9 LINE L1 7103 7372 -272 5 898 213 39 0 0 chr11 41038947 41038973 -80804883 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 898 2458 293 36 21 chr11 41039173 41039979 -80803877 - Lx9 LINE L1 -411 7233 6416 5 898 26 0 0 0 chr11 41039981 41040007 -80803849 + AT_rich Low_complexity Low_complexity 1 26 0 6 898 414 0 0 0 chr11 41040060 41040106 -80803750 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 898 631 137 20 0 chr11 41040109 41040211 -80803645 + Lx9 LINE L1 7319 7422 -222 6 898 875 244 88 5 chr11 41040219 41040490 -80803366 - Lx9 LINE L1 -1804 5892 5608 5 898 201 325 12 38 chr11 41040556 41040636 -80803220 + L2 LINE L2 1273 1350 -2069 6 898 186 246 16 81 chr11 41041054 41041116 -80802740 + L3 LINE CR1 3468 3525 -964 6 898 314 345 20 30 chr11 41041243 41041354 -80802502 - L1MA4 LINE L1 -397 5903 5791 6 898 402 21 0 0 chr11 41041354 41041401 -80802455 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 898 314 345 20 30 chr11 41041401 41041486 -80802370 - L1MA4 LINE L1 -510 5790 5709 6 898 1132 233 57 96 chr11 41041714 41041845 -80802011 + Lx7 LINE L1 7255 7386 -310 6 898 387 0 0 0 chr11 41041845 41041888 -80801968 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 898 1132 233 57 96 chr11 41041888 41042216 -80801640 + Lx7 LINE L1 7387 7696 0 6 898 716 274 41 31 chr11 41042242 41042417 -80801439 + B3A SINE B2 1 180 -18 6 898 441 0 0 0 chr11 41042417 41042466 -80801390 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 898 716 274 41 31 chr11 41042466 41042486 -80801370 + B3A SINE B2 181 198 0 6 898 2839 301 84 34 chr11 41042512 41043713 -80800143 + Lx8 LINE L1 6213 7473 0 7 898 2893 38 3 0 chr11 41047065 41047410 -80796446 + ORR1A1 LTR MaLR 1 346 0 7 898 1260 253 129 13 chr11 41048361 41048734 -80795122 + MTC LTR MaLR 6 421 0 7 898 190 169 54 43 chr11 41048842 41048935 -80794921 + (CATG)n Simple_repeat Simple_repeat 1 94 0 7 898 644 321 59 18 chr11 41048951 41049224 -80794632 - B4 SINE B4 -4 288 5 7 898 1624 244 54 46 chr11 41049257 41049771 -80794085 + Lx2B LINE L1 6161 6957 -43 7 898 749 276 62 43 chr11 41050953 41051229 -80792627 + Lx9 LINE L1 6878 7158 -486 7 898 30 59 0 0 chr11 41052843 41052894 -80790962 + AT_rich Low_complexity Low_complexity 1 51 0 7 898 520 239 62 0 chr11 41054241 41054371 -80789485 - Lx6 LINE L1 -15 7445 7308 7 898 863 164 20 42 chr11 41054499 41054676 -80789180 + ORR1D1 LTR MaLR 194 374 0 8 898 351 343 47 33 chr11 41054682 41054956 -80788900 - L1MD LINE L1 -969 5177 4900 8 898 276 306 10 0 chr11 41055024 41055138 -80788718 - L1M3 LINE L1 -1395 4751 4637 8 898 1299 278 51 3 chr11 41056267 41056617 -80787239 + MTEa LTR MaLR 10 376 -3 8 898 245 29 29 0 chr11 41057877 41057911 -80785945 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8 898 5485 84 45 23 chr11 41058554 41059341 -80784515 - RLTR13C2 LTR ERVK 0 808 5 8 898 4807 127 11 4 chr11 41059663 41060415 -80783441 + Lx2 LINE L1 6240 6996 -1 8 898 713 226 134 21 chr11 41061544 41061738 -80782118 + B3 SINE B2 1 216 0 8 898 412 276 10 10 chr11 41062014 41062113 -80781743 + Lx8 LINE L1 6528 6626 -847 8 898 1186 269 159 54 chr11 41062139 41062622 -80781234 - RMER15 LTR ERVL -21 554 21 8 898 281 259 0 0 chr11 41062699 41062753 -80781103 + Lx8 LINE L1 6624 6677 -796 8 898 1067 268 82 50 chr11 41062929 41063333 -80780523 + Lx8 LINE L1 7057 7473 0 8 898 609 273 63 54 chr11 41065053 41065274 -80778582 - MTD LTR MaLR -2 417 195 9 898 950 170 71 11 chr11 41065292 41065476 -80778380 - Lx4A LINE L1 0 7058 6864 9 898 403 305 148 11 chr11 41065486 41065662 -80778194 - MTD LTR MaLR -221 200 1 9 898 195 42 0 0 chr11 41066820 41066844 -80777012 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 898 2707 214 39 38 chr11 41067552 41068382 -80775474 - Lx6 LINE L1 -1319 6141 5292 9 898 333 0 0 0 chr11 41068413 41068450 -80775406 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 898 670 297 19 0 chr11 41068465 41068620 -80775236 - B3A SINE B2 -38 160 3 9 898 219 302 31 16 chr11 41068627 41068691 -80775165 - PB1 SINE Alu -3 124 60 9 898 205 113 18 54 chr11 41069485 41069529 -80774327 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 9 898 3394 54 31 0 chr11 41069529 41069952 -80773904 - RLTR10C LTR ERVK 0 436 1 9 898 205 113 18 54 chr11 41069952 41069963 -80773893 + (TCTA)n Simple_repeat Simple_repeat 2 10 0 9 898 1030 271 62 70 chr11 41070938 41071470 -80772386 - Lx7 LINE L1 0 7696 7169 1 898 193 213 90 39 chr11 41072379 41072457 -80771399 + MIR SINE MIR 75 156 -106 1 898 251 328 44 9 chr11 41072656 41072770 -80771086 + Charlie1b DNA MER1_type 3 120 -403 1 898 226 350 74 37 chr11 41074115 41074278 -80769578 + B4A SINE B4 1 169 -123 1 898 486 0 0 0 chr11 41074374 41074428 -80769428 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 898 24 53 0 0 chr11 41075642 41075680 -80768176 + AT_rich Low_complexity Low_complexity 1 38 0 1 898 365 331 0 26 chr11 41076745 41076900 -80766956 + MIR SINE MIR 111 261 -1 1 898 754 267 36 69 chr11 41077075 41077437 -80766419 - RLTR15 LTR ERVK -9 350 1 1 898 2391 166 11 50 chr11 41077437 41077893 -80765963 + RMER6B LTR ERVK 20 457 -4 1 898 602 382 89 20 chr11 41077892 41078196 -80765660 + MER70B LTR ERVL 35 359 -219 1 898 2065 234 114 105 chr11 41078481 41079280 -80764576 + Lx7 LINE L1 6828 7633 -63 1 898 21 36 0 0 chr11 41079285 41079313 -80764543 + AT_rich Low_complexity Low_complexity 1 28 0 1 898 21 0 0 0 chr11 41080514 41080535 -80763321 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 342 0 0 0 chr11 41080917 41080955 -80762901 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 898 417 224 31 0 chr11 41080956 41081054 -80762802 - Lx9 LINE L1 -164 7480 7380 1 898 382 224 0 13 chr11 41081044 41081121 -80762735 - Lx9 LINE L1 -813 6831 6756 1 898 3003 72 7 5 chr11 41082588 41082992 -80760864 + L1_Mus3 LINE L1 6229 6633 -5 1 898 7371 15 0 0 chr11 41082999 41083821 -80760035 + RLTR13B2 LTR ERVK 1 822 0 1 898 533 342 190 48 chr11 41083834 41084350 -80759506 + MLT1E2 LTR MaLR 38 626 -1 1 898 798 311 165 51 chr11 41084546 41085635 -80758221 + L1MB1 LINE L1 177 1389 -4678 1 898 553 333 13 0 chr11 41085754 41085910 -80757946 + ID_B1 SINE B4 24 181 -43 1 898 1915 283 106 11 chr11 41085985 41087095 -80756761 + L1MB1 LINE L1 3609 4824 -1316 1 898 399 241 0 0 chr11 41087308 41087387 -80756469 + MT2A LTR ERVL 1 79 -454 1 898 1742 124 26 0 chr11 41087388 41087655 -80756201 - Lx3_Mus LINE L1 -44 6965 6692 1 898 937 165 23 167 chr11 41087667 41087973 -80755883 + RLTRETN_Mm LTR ERVK 1 262 -60 1 898 5103 90 20 5 chr11 41087994 41088729 -80755127 - Lx3_Mus LINE L1 -335 6674 5929 1 898 670 219 336 8 chr11 41088768 41089021 -80754835 + MT2A LTR ERVL 94 429 -104 1 898 324 0 0 0 chr11 41089034 41089070 -80754786 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 898 351 0 0 0 chr11 41089146 41089185 -80754671 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 898 324 281 41 8 chr11 41089197 41089319 -80754537 + L1MB1 LINE L1 5050 5175 -965 1 898 648 206 0 0 chr11 41089319 41089460 -80754396 + GA-rich Low_complexity Low_complexity 1 141 0 1 898 350 333 20 33 chr11 41089669 41089821 -80754035 + ID_B1 SINE B4 69 218 -6 1 898 474 304 36 0 chr11 41089689 41089827 -80754029 + B1F SINE Alu 7 149 0 1 898 546 278 86 56 chr11 41089866 41090319 -80753537 + L1MB1 LINE L1 5433 5905 -275 1 898 187 293 48 24 chr11 41090929 41091013 -80752843 - L2a LINE L2 -79 3347 3262 1 898 202 262 0 0 chr11 41091323 41091384 -80752472 + (CAA)n Simple_repeat Simple_repeat 2 62 0 1 898 402 94 0 0 chr11 41091385 41091449 -80752407 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 898 529 335 66 38 chr11 41091454 41091637 -80752219 - ID_B1 SINE B4 -25 199 12 1 898 304 269 9 27 chr11 41092005 41092116 -80751740 + L1VL2 LINE L1 85 193 -6142 1 898 29501 161 22 71 chr11 41092108 41093906 -80749950 + L1Md_F LINE L1 332 2075 -3808 1 898 221 0 0 33 chr11 41093906 41093936 -80749920 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 898 29501 116 9 17 chr11 41093936 41095396 -80748460 + L1Md_F LINE L1 2076 3482 -2401 1 898 269 48 48 0 chr11 41095396 41095438 -80748418 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 898 29501 116 9 17 chr11 41095438 41096683 -80747173 + L1Md_F LINE L1 3483 4736 -1147 1 898 354 17 69 0 chr11 41096683 41096741 -80747115 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 1 898 29501 116 9 17 chr11 41096741 41097873 -80745983 + L1Md_F LINE L1 4737 5871 -12 1 898 2716 178 47 81 chr11 41097873 41099232 -80744624 - L1VL4 LINE L1 -2275 1542 180 1 898 1569 229 71 6 chr11 41099359 41099710 -80744146 - Lx5 LINE L1 -3 7047 6674 1 898 628 200 117 0 chr11 41099706 41099851 -80744005 + Lx5 LINE L1 6523 6684 -366 1 898 1273 183 45 21 chr11 41100023 41100313 -80743543 - Lx5 LINE L1 -1057 5993 5697 1 898 1254 196 43 18 chr11 41100294 41100570 -80743286 - L1_Mur2 LINE L1 -42 5835 5553 1 898 1527 307 83 42 chr11 41100585 41101677 -80742179 + Lx6 LINE L1 6059 7414 -46 1 898 183 80 0 0 chr11 41101682 41101707 -80742149 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 898 344 59 0 19 chr11 41103274 41103326 -80740530 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 898 381 314 33 0 chr11 41103332 41103453 -80740403 - RSINE1 SINE B4 -21 144 20 1 898 3203 29 0 0 chr11 41103467 41103847 -80740009 - L1Md_T LINE L1 0 6582 6203 1 898 4658 55 36 7 chr11 41104648 41105255 -80738601 - L1Md_F2 LINE L1 -4 6578 5954 1 898 24 32 0 0 chr11 41105504 41105535 -80738321 + AT_rich Low_complexity Low_complexity 1 31 0 1 898 200 203 34 0 chr11 41105547 41105606 -80738250 + CT-rich Low_complexity Low_complexity 2 62 0 1 898 1128 65 0 0 chr11 41106109 41106262 -80737594 - L1Md_A LINE L1 0 6582 6430 1 898 330 293 102 46 chr11 41107262 41107459 -80736397 + L1MC4a LINE L1 7665 7872 -10 1 898 342 0 0 0 chr11 41108046 41108084 -80735772 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 898 1168 205 0 0 chr11 41108170 41108394 -80735462 - URR1B DNA MER1_type 0 225 2 1 898 326 329 58 108 chr11 41108411 41108670 -80735186 - Lx9 LINE L1 -274 7370 7125 1 898 279 89 14 56 chr11 41108780 41108851 -80735005 + (CAA)n Simple_repeat Simple_repeat 2 69 0 1 898 711 92 8 15 chr11 41109222 41109355 -80734501 + (TA)n Simple_repeat Simple_repeat 1 132 0 1 898 1247 324 63 21 chr11 41109355 41109866 -80733990 + Lx9 LINE L1 6346 6877 -767 1 898 247 103 0 0 chr11 41110357 41110400 -80733456 - L1_Mus3 LINE L1 -283 6299 6251 1 898 1560 90 0 78 chr11 41110425 41110667 -80733189 + L1_Mus2 LINE L1 6344 6566 0 1 898 240 292 220 31 chr11 41111420 41111643 -80732213 + L1M2 LINE L1 3767 4031 -2112 1 898 9182 126 29 11 chr11 41112380 41114675 -80729181 + L1_Mus3 LINE L1 4317 6633 -5 1 898 486 70 0 0 chr11 41115811 41115882 -80727974 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 898 306 0 0 0 chr11 41115892 41115926 -80727930 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 898 555 299 131 61 chr11 41116281 41116609 -80727247 - ORR1E LTR MaLR 0 359 9 1 898 612 303 26 26 chr11 41117003 41117193 -80726663 + Lx8 LINE L1 7127 7316 -157 1 898 357 154 0 0 chr11 41117281 41117372 -80726484 + CT-rich Low_complexity Low_complexity 2 92 0 1 898 387 41 0 0 chr11 41117617 41117666 -80726190 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 898 619 258 71 15 chr11 41117725 41117922 -80725934 - B3 SINE B2 -4 212 5 1 898 683 339 36 5 chr11 41117928 41118150 -80725706 - B4A SINE B4 -62 230 2 1 898 2262 296 81 45 chr11 41118404 41119395 -80724461 - Lx8 LINE L1 -5 7468 6431 1 898 405 88 12 48 chr11 41119395 41119479 -80724377 - L1Md_F2 LINE L1 -1 6581 6501 1 898 2262 296 81 45 chr11 41119479 41119516 -80724340 - Lx8 LINE L1 -1043 6430 6393 1 898 1847 204 71 2 chr11 41119516 41119910 -80723946 + MTC LTR MaLR 1 421 0 1 898 2262 296 81 45 chr11 41119910 41119992 -80723864 - Lx8 LINE L1 -1081 6392 6317 1 898 1455 234 73 45 chr11 41119994 41120392 -80723464 + MERVL_2A-int LTR ERVL 4865 5273 -488 1 898 2397 185 71 13 chr11 41120394 41120931 -80722925 + RMER6C LTR ERVK 123 690 0 1 898 1662 275 81 17 chr11 41121044 41121791 -80722065 - Lx8 LINE L1 -1721 5975 5178 1 898 852 290 16 0 chr11 41121810 41122003 -80721853 - B3 SINE B2 -9 207 12 1 898 186 71 0 0 chr11 41122068 41122096 -80721760 + (T)n Simple_repeat Simple_repeat 1 28 0 1 898 414 0 0 0 chr11 41122151 41122197 -80721659 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 898 235 351 59 24 chr11 41122264 41122433 -80721423 - L2 LINE L2 -411 3008 2834 1 898 390 35 0 0 chr11 41122561 41122618 -80721238 - L1_Mus3 LINE L1 -5 6633 6577 1 898 1593 43 5 5 chr11 41122993 41123201 -80720655 - L1Md_F2 LINE L1 -3 6579 6372 1 898 1184 54 0 0 chr11 41123286 41123433 -80720423 - B1_Mus2 SINE Alu 0 147 1 1 898 468 0 0 0 chr11 41123821 41123873 -80719983 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 898 219 114 0 0 chr11 41124161 41124196 -80719660 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 898 355 213 69 69 chr11 41125254 41125385 -80718471 - LTR37B LTR ERV1 -10 458 328 1 898 649 109 192 8 chr11 41125742 41125862 -80717994 - B1_Mm SINE Alu 0 147 6 1 898 2131 112 63 3 chr11 41126320 41126669 -80717187 - L1_Mus3 LINE L1 -6 6632 6263 1 898 229 293 123 45 chr11 41126803 41126924 -80716932 - L1M2 LINE L1 -1662 4481 4358 1 898 194 0 0 37 chr11 41126924 41126951 -80716905 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 898 229 293 123 45 chr11 41126951 41127097 -80716759 - L1M2 LINE L1 -1786 4357 4193 1 898 279 93 0 0 chr11 41127132 41127175 -80716681 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 898 851 253 82 18 chr11 41127213 41127543 -80716313 - L1M2 LINE L1 -1955 4188 3838 1 898 351 179 0 0 chr11 41127780 41127847 -80716009 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 898 207 0 0 0 chr11 41127883 41127906 -80715950 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 898 737 236 0 0 chr11 41128274 41128414 -80715442 - B1_Mur4 SINE Alu -5 145 6 1 898 21 36 0 0 chr11 41129177 41129205 -80714651 + AT_rich Low_complexity Low_complexity 1 28 0 1 898 334 180 88 22 chr11 41129382 41129473 -80714383 - HAL1-3A_ME LINE L1 -786 2072 1976 1 898 465 268 0 92 chr11 41129474 41129647 -80714209 - B3A SINE B2 -16 182 26 1 898 217 370 40 10 chr11 41130967 41131068 -80712788 - L2a LINE L2 -30 3396 3293 1 898 500 267 17 0 chr11 41131089 41131205 -80712651 + B3 SINE B2 2 119 -97 1 898 4592 81 6 5 chr11 41131435 41132070 -80711786 - L1_Mus1 LINE L1 -1 6566 5931 1 898 722 43 0 0 chr11 41132070 41132162 -80711694 + L1_Mus1 LINE L1 5845 5936 -630 1 898 412 305 115 34 chr11 41132648 41132940 -80710916 - L1MB8 LINE L1 -64 6974 6653 1 898 339 85 0 0 chr11 41132940 41132987 -80710869 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 898 652 181 22 15 chr11 41132987 41133122 -80710734 - Lx3B LINE L1 -8 6965 6830 1 898 412 305 115 34 chr11 41133122 41133297 -80710559 - L1MB8 LINE L1 -386 6652 6469 1 898 324 256 109 0 chr11 41133319 41133559 -80710297 - L1MB8 LINE L1 -630 6413 6137 1 898 432 0 0 0 chr11 41133935 41133983 -80709873 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 898 568 328 67 21 chr11 41133991 41134321 -80709535 + RMER5 LTR ERV1 33 377 -157 2 898 420 20 0 0 chr11 41134326 41134375 -80709481 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 898 230 216 59 0 chr11 41134381 41134432 -80709424 + RMER5 LTR ERV1 472 525 -9 2 898 318 324 74 45 chr11 41134434 41134744 -80709112 - L1MB8 LINE L1 -941 6065 5747 1 898 232 255 73 21 chr11 41134822 41134918 -80708938 + Lx8 LINE L1 6897 6997 -476 2 898 447 278 37 32 chr11 41134992 41135199 -80708657 - L1MB8 LINE L1 -1358 5648 5438 1 898 898 310 51 30 chr11 41135206 41135542 -80708314 - MLT1B LTR MaLR -11 379 37 2 898 286 342 20 20 chr11 41135587 41135739 -80708117 - L1MB8 LINE L1 -6226 1108 957 1 898 235 293 115 49 chr11 41135875 41135997 -80707859 - L1MB8 LINE L1 -6590 744 615 1 898 2304 51 0 3 chr11 41136013 41136306 -80707550 - L1Md_F3 LINE L1 0 6584 6293 2 898 243 88 0 0 chr11 41136775 41136809 -80707047 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 898 2025 164 16 57 chr11 41137268 41137656 -80706200 + ORR1C1 LTR MaLR 6 377 -1 2 898 534 270 170 30 chr11 41138421 41138692 -80705164 + RMER5 LTR ERV1 72 380 -154 2 898 387 0 0 0 chr11 41139307 41139350 -80704506 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 898 23 0 0 0 chr11 41139451 41139474 -80704382 + AT_rich Low_complexity Low_complexity 1 23 0 2 898 3045 27 0 8 chr11 41140212 41140581 -80703275 + L1Md_F2 LINE L1 6205 6570 -12 2 898 276 361 103 34 chr11 41141654 41141829 -80702027 - B4A SINE B4 0 292 106 2 898 1832 173 130 3 chr11 41141852 41142228 -80701628 + BGLII_B LTR ERVK 1 424 -17 2 898 220 333 0 13 chr11 41142228 41142304 -80701552 - B4A SINE B4 -205 87 13 2 898 480 333 28 0 chr11 41142805 41142946 -80700910 + Lx8 LINE L1 7123 7267 -206 2 898 239 128 81 0 chr11 41143001 41143087 -80700769 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 898 231 318 149 0 chr11 41143584 41143738 -80700118 - L1MC4 LINE L1 -432 7610 7434 2 898 27 0 0 0 chr11 41144111 41144138 -80699718 + AT_rich Low_complexity Low_complexity 1 27 0 2 898 290 362 0 0 chr11 41144195 41144300 -80699556 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 898 210 343 21 120 chr11 41144396 41144588 -80699268 - B4A SINE B4 -118 174 2 2 898 198 0 0 0 chr11 41145304 41145326 -80698530 + (T)n Simple_repeat Simple_repeat 1 22 0 2 898 2438 7 0 0 chr11 41145335 41145608 -80698248 - L1Md_A LINE L1 0 6582 6310 2 898 216 0 0 0 chr11 41146038 41146062 -80697794 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 898 316 316 24 12 chr11 41146502 41146672 -80697184 + GA-rich Low_complexity Low_complexity 2 173 0 2 898 410 353 48 39 chr11 41146685 41147015 -80696841 - L1MC LINE L1 -791 5355 5023 2 898 280 264 46 0 chr11 41147832 41147900 -80695956 + ID4 SINE ID 8 78 -5 2 898 296 333 120 0 chr11 41148084 41148192 -80695664 - B1F SINE Alu -17 132 12 2 898 195 239 69 69 chr11 41148368 41148440 -80695416 - L3 LINE CR1 -1161 3328 3257 2 898 436 354 11 17 chr11 41148546 41148727 -80695129 + B3A SINE B2 3 182 -16 2 898 1495 170 156 47 chr11 41150082 41150299 -80693557 - RMER10B LTR ERVL 0 398 196 2 898 279 0 0 0 chr11 41150299 41150330 -80693526 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 898 1495 170 156 47 chr11 41150330 41150471 -80693385 - RMER10B LTR ERVL -203 195 1 2 898 210 200 16 16 chr11 41150518 41150579 -80693277 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 2 898 504 0 0 0 chr11 41152294 41152350 -80691506 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 898 441 0 0 0 chr11 41152350 41152398 -80691458 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 898 258 266 0 45 chr11 41153731 41153798 -80690058 - RMER15 LTR ERVL -176 399 336 2 898 344 159 158 74 chr11 41154224 41154319 -80689537 - B1_Mur4 SINE Alu 0 150 48 2 898 321 247 33 22 chr11 41155152 41155243 -80688613 - RLTR23 LTR ERV1 0 430 339 2 898 591 279 53 21 chr11 41155798 41155985 -80687871 - B3A SINE B2 -4 194 2 2 898 30 59 0 0 chr11 41156504 41156555 -80687301 + AT_rich Low_complexity Low_complexity 1 51 0 2 899 2386 300 20 50 chr11 41157216 41158049 -80685807 + Lx7 LINE L1 6434 7241 -455 2 899 218 241 11 46 chr11 41158086 41158173 -80685683 + T-rich Low_complexity Low_complexity 3 86 0 2 899 315 0 0 0 chr11 41158177 41158212 -80685644 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 899 474 61 0 0 chr11 41158213 41158279 -80685577 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 899 1242 87 0 0 chr11 41158524 41158697 -80685159 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 2 899 240 35 0 0 chr11 41158697 41158725 -80685131 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 2 899 1070 96 7 0 chr11 41158753 41158899 -80684957 - B1_Mus2 SINE Alu 0 147 1 2 899 1159 287 42 25 chr11 41159487 41159848 -80684008 - Lx8 LINE L1 -108 7365 6999 2 899 217 280 0 0 chr11 41162677 41162727 -80681129 + CT-rich Low_complexity Low_complexity 3 52 0 2 899 231 61 0 0 chr11 41162918 41162951 -80680905 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 899 1984 310 70 71 chr11 41162985 41164103 -80679753 + Lx8 LINE L1 6351 7467 -6 2 899 587 294 27 22 chr11 41164452 41164636 -80679220 + B3A SINE B2 9 193 -5 2 899 264 350 25 33 chr11 41164715 41164836 -80679020 - L3 LINE CR1 -75 4414 4295 2 899 269 333 94 9 chr11 41165233 41165339 -80678517 - MIRc SINE MIR -64 204 90 2 899 26 0 0 0 chr11 41166184 41166210 -80677646 + AT_rich Low_complexity Low_complexity 1 26 0 2 899 402 322 0 0 chr11 41166584 41166699 -80677157 + MTE2b LTR MaLR 1 115 -264 2 899 284 202 29 39 chr11 41166779 41166882 -80676974 + Lx9 LINE L1 7543 7644 0 2 899 1533 257 62 8 chr11 41166905 41167274 -80676582 - MT2A LTR ERVL -144 389 1 2 899 195 42 0 0 chr11 41167668 41167692 -80676164 + (TATG)n Simple_repeat Simple_repeat 1 24 0 2 899 1934 138 139 10 chr11 41167692 41168108 -80675748 + IAPLTR2_Mm LTR ERVK 5 474 -1 2 899 206 62 31 0 chr11 41168108 41168140 -80675716 + (TATG)n Simple_repeat Simple_repeat 3 35 0 2 899 192 97 0 0 chr11 41168145 41168176 -80675680 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 899 535 296 42 0 chr11 41168176 41168318 -80675538 - B3 SINE B2 -68 148 1 2 899 324 250 170 0 chr11 41168883 41168983 -80674873 + MLT1A1 LTR MaLR 291 407 -1 2 899 5838 44 4 0 chr11 41169366 41170076 -80673780 - L1Md_F2 LINE L1 0 6582 5870 2 899 2278 136 52 3 chr11 41171421 41171789 -80672067 + ORR1B1 LTR MaLR 1 386 -8 2 899 29 28 0 0 chr11 41174560 41174596 -80669260 + AT_rich Low_complexity Low_complexity 1 36 0 2 899 304 177 55 127 chr11 41174596 41174706 -80669150 - L1MA4 LINE L1 -368 5932 5831 2 899 1150 76 0 0 chr11 41174742 41174887 -80668969 + B1_Mus1 SINE Alu 3 147 -1 2 899 501 32 0 0 chr11 41176176 41176239 -80667617 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 899 227 257 24 114 chr11 41177100 41177223 -80666633 + L4 LINE RTE 1910 2021 -8 2 899 225 59 19 56 chr11 41178119 41178173 -80665683 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2 899 602 253 131 6 chr11 41178561 41178744 -80665112 - Lx5 LINE L1 0 7050 6845 2 899 378 306 62 90 chr11 41179786 41180030 -80663826 + L1MD LINE L1 5110 5346 -800 2 899 1433 271 43 10 chr11 41180120 41180519 -80663337 + MTD LTR MaLR 7 418 -1 2 899 22 35 0 0 chr11 41180601 41180630 -80663226 + AT_rich Low_complexity Low_complexity 1 29 0 2 899 22 56 0 0 chr11 41180893 41180929 -80662927 + AT_rich Low_complexity Low_complexity 1 36 0 2 899 850 289 189 22 chr11 41181037 41181402 -80662454 - Lx8 LINE L1 -130 7343 6918 2 899 417 20 0 0 chr11 41182377 41182427 -80661429 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 899 230 217 0 0 chr11 41182427 41182473 -80661383 - Lx9 LINE L1 -206 7438 7393 2 899 1897 117 34 61 chr11 41182493 41182820 -80661036 + ORR1A3 LTR MaLR 1 318 -8 2 899 1582 333 70 21 chr11 41182836 41183602 -80660254 - Lx8 LINE L1 -240 7233 6430 2 899 609 52 0 0 chr11 41186075 41186152 -80657704 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 899 636 14 0 0 chr11 41186389 41186462 -80657394 + (TTCTC)n Simple_repeat Simple_repeat 2 74 0 2 899 919 284 112 38 chr11 41186496 41186759 -80657097 - MTE2a LTR MaLR -9 370 115 2 899 402 57 0 0 chr11 41186759 41186812 -80657044 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 899 919 284 112 38 chr11 41186812 41186888 -80656968 - MTE2a LTR MaLR -265 114 7 2 899 372 299 67 87 chr11 41186918 41187068 -80656788 - B3A SINE B2 -5 193 47 2 899 241 78 78 0 chr11 41187674 41187725 -80656131 + T-rich Low_complexity Low_complexity 5 59 0 2 899 1154 62 0 0 chr11 41187725 41187869 -80655987 - B1_Mm SINE Alu 0 147 4 2 899 394 61 30 0 chr11 41187963 41188029 -80655827 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 899 1260 62 0 0 chr11 41188414 41188575 -80655281 - L1_Mus1 LINE L1 -409 6158 5998 2 899 8143 48 4 0 chr11 41188575 41189813 -80654043 - L1Md_F2 LINE L1 0 6582 5342 2 899 1484 90 0 0 chr11 41189805 41190005 -80653851 - L1_Mus1 LINE L1 -559 6008 5809 2 899 1501 79 0 0 chr11 41190005 41190207 -80653649 + L1_Mus1 LINE L1 6366 6567 0 2 899 699 217 0 0 chr11 41190374 41190531 -80653325 + CT-rich Low_complexity Low_complexity 4 160 0 2 899 1440 279 106 2 chr11 41190964 41191417 -80652439 - Lx6 LINE L1 -8 7452 6953 2 899 485 209 8 34 chr11 41191460 41191579 -80652277 - Lx6 LINE L1 -15 7445 7330 2 899 23 33 0 0 chr11 41192330 41192360 -80651496 + AT_rich Low_complexity Low_complexity 1 30 0 2 899 1781 190 34 69 chr11 41193127 41193545 -80650311 - RLTR11A LTR ERVK 0 528 126 2 899 238 373 27 27 chr11 41193844 41193990 -80649866 + MIRb SINE MIR 72 217 -51 2 899 23 54 0 0 chr11 41194075 41194112 -80649744 + AT_rich Low_complexity Low_complexity 1 37 0 2 899 38246 10 1 7 chr11 41194387 41199800 -80644056 + L1Md_A LINE L1 208 5586 -297 2 899 8864 12 0 0 chr11 41199800 41200796 -80643060 + L1Md_A LINE L1 5587 6582 0 2 899 7607 72 2 22 chr11 41201295 41202628 -80641228 - L1_Mus2 LINE L1 0 6566 5259 3 899 396 0 0 0 chr11 41204183 41204227 -80639629 + (CATA)n Simple_repeat Simple_repeat 2 45 0 3 899 464 361 66 24 chr11 41204674 41205006 -80638850 + MLT1E2 LTR MaLR 19 364 -1 3 899 183 310 17 17 chr11 41205594 41205653 -80638203 + L2 LINE L2 94 152 -3267 3 899 1651 78 64 24 chr11 41206317 41206566 -80637290 - L1Md_F2 LINE L1 0 6582 6324 3 899 2169 37 0 0 chr11 41207126 41207394 -80636462 - MT2C_Mm LTR ERVL -207 268 1 3 899 530 304 17 33 chr11 41207409 41207589 -80636267 + MLT1E2 LTR MaLR 451 627 0 3 899 2817 267 58 3 chr11 41208224 41208268 -80635588 + Lx6 LINE L1 6704 6755 -705 3 899 453 36 0 0 chr11 41208268 41208323 -80635533 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 899 2817 267 58 3 chr11 41208323 41208991 -80634865 + Lx6 LINE L1 6756 7455 -5 3 899 1154 231 34 114 chr11 41209668 41210020 -80633836 - RMER19C LTR ERVK 0 611 288 3 899 1908 114 26 10 chr11 41210636 41210938 -80632918 + RLTR27 LTR ERVK 3 309 0 3 899 191 229 0 16 chr11 41211624 41211686 -80632170 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 899 231 36 0 0 chr11 41211690 41211718 -80632138 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 899 297 283 91 36 chr11 41212113 41212278 -80631578 - L1MA9 LINE L1 -202 6110 5937 3 899 380 138 18 0 chr11 41212298 41212374 -80631482 + Lx2B LINE L1 6645 6727 -273 3 899 354 252 42 8 chr11 41212416 41212536 -80631320 - L1M2 LINE L1 -2184 3959 3836 3 899 203 229 21 0 chr11 41213035 41213083 -80630773 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 899 360 0 0 0 chr11 41214442 41214482 -80629374 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 899 453 165 0 0 chr11 41214483 41214580 -80629276 + GA-rich Low_complexity Low_complexity 1 97 0 3 899 236 263 83 92 chr11 41214940 41215049 -80628807 + MTEb LTR MaLR 3 110 -269 3 899 1621 98 53 4 chr11 41215050 41215297 -80628559 - L1_Mur2 LINE L1 -1107 4770 4512 3 899 4745 177 38 6 chr11 41215298 41216166 -80627690 + Lx4A LINE L1 6161 7056 -2 3 899 181 349 132 33 chr11 41216881 41217154 -80626702 - L2 LINE L2 -565 2854 2555 3 899 290 299 16 8 chr11 41217450 41217578 -80626278 + L1MA10 LINE L1 6202 6330 -4 3 899 304 366 87 46 chr11 41217789 41218201 -80625655 - L2 LINE L2 -1015 2404 1976 3 899 745 346 36 43 chr11 41218625 41219069 -80624787 + Lx8 LINE L1 6144 6584 -889 3 899 2152 53 0 4 chr11 41219067 41219333 -80624523 + L1Md_F2 LINE L1 5322 5586 -297 3 899 7562 73 1 9 chr11 41219334 41220337 -80623519 + L1Md_F2 LINE L1 5588 6582 0 3 899 1184 344 84 35 chr11 41220357 41221038 -80622818 + Lx8 LINE L1 6606 7319 -154 3 899 4474 201 20 27 chr11 41221068 41222045 -80621811 - Lx3C LINE L1 -6 6970 6000 3 899 581 0 14 0 chr11 41222127 41222196 -80621660 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 3 899 420 20 0 0 chr11 41222196 41222245 -80621611 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 899 1007 77 6 18 chr11 41222400 41222571 -80621285 + (TTC)n Simple_repeat Simple_repeat 3 171 0 3 899 780 42 0 0 chr11 41222571 41222667 -80621189 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 899 6863 7 0 0 chr11 41222831 41223594 -80620262 - L1Md_T LINE L1 0 6582 5820 3 899 417 333 26 20 chr11 41224366 41224519 -80619337 + RSINE1 SINE B4 12 165 0 3 899 183 80 0 0 chr11 41224583 41224608 -80619248 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 899 203 182 36 18 chr11 41224853 41224909 -80618947 + T-rich Low_complexity Low_complexity 3 59 0 3 899 181 77 0 71 chr11 41224980 41225022 -80618834 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 899 21 36 0 0 chr11 41225105 41225133 -80618723 + AT_rich Low_complexity Low_complexity 1 28 0 3 899 620 143 9 0 chr11 41225312 41225417 -80618439 + URR1A DNA MER1_type 60 165 -61 3 899 314 159 0 14 chr11 41225572 41225642 -80618214 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 899 7633 135 44 13 chr11 41226783 41228548 -80615308 + Lx3C LINE L1 5132 6966 -10 3 899 359 56 19 0 chr11 41228559 41228613 -80615243 + (TAA)n Simple_repeat Simple_repeat 3 57 0 3 899 1047 199 23 14 chr11 41229828 41230042 -80613814 + RLTR15 LTR ERVK 3 218 -141 3 899 409 241 44 15 chr11 41230042 41230177 -80613679 + MYSERV-int LTR ERVK 6410 6548 -2 3 899 1592 147 142 6 chr11 41230179 41230495 -80613361 + RLTR15 LTR ERVK 1 359 0 3 899 557 40 13 0 chr11 41231495 41231571 -80612285 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 899 270 0 0 0 chr11 41231572 41231602 -80612254 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 899 360 352 30 18 chr11 41234544 41234874 -80608982 + L1M2 LINE L1 5369 5702 -598 3 899 303 122 0 0 chr11 41234947 41234996 -80608860 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 899 26 30 0 0 chr11 41234999 41235032 -80608824 + AT_rich Low_complexity Low_complexity 1 33 0 3 899 482 261 70 0 chr11 41235059 41235174 -80608682 + B1_Mur2 SINE Alu 1 123 -26 3 899 257 289 24 0 chr11 41235184 41235267 -80608589 + MIR SINE MIR 119 203 -59 3 899 285 129 65 0 chr11 41236132 41236194 -80607662 - Lx2 LINE L1 -1 6996 6931 3 899 461 281 121 43 chr11 41236780 41236817 -80607039 + Lx9 LINE L1 7197 7233 -411 3 899 1798 146 11 111 chr11 41236817 41237179 -80606677 + ORR1A2 LTR MaLR 2 327 0 3 899 461 281 121 43 chr11 41237179 41237372 -80606484 + Lx9 LINE L1 7234 7445 -199 3 899 463 340 37 12 chr11 41238870 41239034 -80604822 - MER5A DNA MER1_type -1 188 21 3 899 509 94 0 5 chr11 41240271 41240355 -80603501 + L1_Mm LINE L1 4092 4195 -1945 3 899 358 55 0 0 chr11 41240467 41240522 -80603334 - L1_Mus1 LINE L1 0 6567 6513 3 899 1085 58 7 0 chr11 41241511 41241650 -80602206 + B1_Mm SINE Alu 1 140 -7 3 899 3245 49 5 2 chr11 41241807 41242219 -80601637 + L1Md_F2 LINE L1 6167 6579 -3 3 899 525 208 106 15 chr11 41242253 41242385 -80601471 + RCHARR1 DNA MER1_type 3 146 -828 3 899 355 218 127 8 chr11 41242544 41242678 -80601178 + RCHARR1 DNA MER1_type 764 913 -61 3 899 312 27 0 0 chr11 41242712 41242749 -80601107 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 899 269 296 126 36 chr11 41242791 41243068 -80600788 + L1M5 LINE L1 5527 5828 -351 3 899 258 169 0 0 chr11 41243279 41243344 -80600512 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 899 419 266 27 27 chr11 41243349 41243461 -80600395 - B3 SINE B2 -9 207 96 3 899 1099 96 0 0 chr11 41243476 41243622 -80600234 - B1_Mm SINE Alu 0 147 2 3 899 213 216 157 0 chr11 41243669 41243720 -80600136 - B3 SINE B2 -131 85 27 3 899 616 130 27 18 chr11 41243755 41243767 -80600089 - PB1D9 SINE Alu -2 118 107 3 899 189 0 0 0 chr11 41243767 41243788 -80600068 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 899 634 66 13 2 chr11 41243788 41243885 -80599971 - B1_Mus1 SINE Alu -14 106 8 3 899 237 175 0 0 chr11 41243893 41243933 -80599923 - B3 SINE B2 -175 41 2 3 899 312 329 41 35 chr11 41244207 41244352 -80599504 + MLT1A0 LTR MaLR 216 361 -4 3 899 456 262 0 0 chr11 41244443 41244546 -80599310 - RSINE1 SINE B4 -60 105 3 3 899 351 0 0 0 chr11 41244774 41244813 -80599043 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 899 184 298 52 17 chr11 41245117 41245175 -80598681 - L3 LINE CR1 -1288 3201 3142 3 899 295 312 31 0 chr11 41245384 41245480 -80598376 - PB1D7 SINE Alu -21 99 1 3 899 21 0 0 0 chr11 41245512 41245533 -80598323 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 234 0 0 0 chr11 41246338 41246364 -80597492 + (T)n Simple_repeat Simple_repeat 1 26 0 3 899 33 0 0 0 chr11 41247232 41247265 -80596591 + AT_rich Low_complexity Low_complexity 1 33 0 3 899 290 171 78 22 chr11 41248029 41248119 -80595737 - Lx9 LINE L1 -94 7550 7456 3 899 320 198 99 0 chr11 41248109 41248200 -80595656 + Lx9 LINE L1 7373 7472 -172 3 899 186 50 49 24 chr11 41248468 41248509 -80595347 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 3 899 277 278 30 8 chr11 41248522 41248656 -80595200 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 3 899 200 35 35 0 chr11 41249050 41249079 -80594777 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 899 402 18 36 0 chr11 41249620 41249675 -80594181 + B1_Mur4 SINE Alu 94 150 0 3 899 22 35 0 0 chr11 41249696 41249725 -80594131 + AT_rich Low_complexity Low_complexity 1 29 0 3 899 318 272 62 31 chr11 41250303 41250432 -80593424 - Tigger7 DNA MER2_type -1883 608 476 3 899 250 322 56 0 chr11 41250709 41250799 -80593057 + MLT1A1 LTR MaLR 295 389 -19 3 899 534 287 44 13 chr11 41250840 41250999 -80592857 - Tigger7 DNA MER2_type -2045 446 283 3 899 663 304 55 52 chr11 41251011 41251340 -80592516 + RLTR14 LTR ERV1 9 338 -44 3 899 658 357 53 0 chr11 41251399 41251643 -80592213 - Tigger7 DNA MER2_type -2230 261 5 3 899 819 0 0 0 chr11 41253452 41253543 -80590313 + (TTC)n Simple_repeat Simple_repeat 3 93 0 3 899 3792 143 11 30 chr11 41253828 41254471 -80589385 - Lx3B LINE L1 -6 6967 6337 3 899 21 0 0 0 chr11 41255745 41255766 -80588090 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 415 0 36 0 chr11 41256282 41256337 -80587519 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 3 899 34 42 0 0 chr11 41256406 41256454 -80587402 + AT_rich Low_complexity Low_complexity 1 48 0 3 899 21 0 0 0 chr11 41257442 41257463 -80586393 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 2291 70 6 3 chr11 41258290 41258604 -80585252 - L1Md_F2 LINE L1 -1 6581 6267 3 899 561 30 0 0 chr11 41258715 41258782 -80585074 + (TTTCC)n Simple_repeat Simple_repeat 3 69 0 3 899 1100 110 0 0 chr11 41258782 41258928 -80584928 - B1_Mus2 SINE Alu -1 146 1 3 899 189 0 0 0 chr11 41258929 41258950 -80584906 + (T)n Simple_repeat Simple_repeat 1 21 0 3 899 708 196 13 13 chr11 41260799 41260949 -80582907 + B1_Mur4 SINE Alu 1 150 0 3 899 556 148 9 9 chr11 41261082 41261191 -80582665 + T-rich Low_complexity Low_complexity 1 109 0 3 899 418 100 0 137 chr11 41261172 41261369 -80582487 + CT-rich Low_complexity Low_complexity 1 170 0 3 899 796 20 10 10 chr11 41261369 41261472 -80582384 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 3 899 854 92 39 13 chr11 41262688 41262842 -80581014 + (TTTCC)n Simple_repeat Simple_repeat 4 161 0 3 899 525 75 0 0 chr11 41262842 41262909 -80580947 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 3 899 2012 136 9 0 chr11 41262942 41263258 -80580598 - Lx3_Mus LINE L1 0 7009 6691 3 899 1001 111 39 0 chr11 41263523 41263702 -80580154 - Lx2B LINE L1 -272 6725 6521 3 899 1429 152 80 0 chr11 41263704 41263967 -80579889 + Lx2A1 LINE L1 6725 7008 0 3 899 2581 31 0 45 chr11 41264026 41264361 -80579495 + RLTRETN_Mm LTR ERVK 1 320 -2 4 899 216 0 0 0 chr11 41264536 41264560 -80579296 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 899 203 133 0 0 chr11 41264849 41264879 -80578977 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 899 22 35 0 0 chr11 41265254 41265283 -80578573 + AT_rich Low_complexity Low_complexity 1 29 0 4 899 4628 201 45 50 chr11 41265704 41266363 -80577493 + Lx2B LINE L1 5935 6603 -397 4 899 2301 96 12 58 chr11 41266363 41266706 -80577150 + ORR1A2 LTR MaLR 1 327 0 4 899 4628 201 45 50 chr11 41266706 41267104 -80576752 + Lx2B LINE L1 6604 6987 -13 4 899 462 101 0 0 chr11 41267171 41267240 -80576616 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 899 640 239 37 15 chr11 41267602 41267738 -80576118 + RSINE1 SINE B4 6 144 -21 4 899 524 77 13 0 chr11 41267747 41267825 -80576031 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 4 899 644 272 5 58 chr11 41268402 41268593 -80575263 - B3A SINE B2 -16 182 2 4 899 251 274 0 14 chr11 41268596 41268670 -80575186 - L1MC1 LINE L1 -10 6323 6251 4 899 204 40 0 0 chr11 41268741 41268766 -80575090 + (CAT)n Simple_repeat Simple_repeat 2 26 0 4 899 609 93 9 18 chr11 41268818 41268927 -80574929 + (TA)n Simple_repeat Simple_repeat 1 108 0 4 899 459 48 0 0 chr11 41269098 41269160 -80574696 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 899 478 287 106 53 chr11 41269165 41269316 -80574540 - B3A SINE B2 -38 160 2 4 899 210 286 0 0 chr11 41269407 41269449 -80574407 - ID4 SINE ID -19 64 23 4 899 771 316 13 46 chr11 41270044 41270283 -80573573 + MTEa LTR MaLR 1 231 -148 4 899 2180 238 52 27 chr11 41270303 41270934 -80572922 - RMER19C LTR ERVK -12 890 1 4 899 261 297 31 0 chr11 41270935 41270999 -80572857 + MTEa LTR MaLR 238 303 -76 4 899 438 271 31 73 chr11 41272690 41272914 -80570942 + B3A SINE B2 1 212 -4 4 899 1037 91 7 0 chr11 41273160 41273303 -80570553 + B1_Mus1 SINE Alu 5 148 0 4 899 271 376 33 17 chr11 41273599 41273780 -80570076 + L2 LINE L2 1958 2141 -1278 4 899 231 222 0 0 chr11 41276125 41276170 -80567686 - MTD LTR MaLR -8 411 367 4 899 4218 218 65 35 chr11 41276189 41277251 -80566605 + Lx5 LINE L1 5955 7048 -2 4 899 1737 219 45 3 chr11 41277270 41277627 -80566229 - MTD LTR MaLR -45 374 3 4 899 1903 162 6 3 chr11 41277801 41278147 -80565709 - Lx3C LINE L1 -885 6091 5745 4 899 2723 243 72 22 chr11 41278144 41278982 -80564874 + Lx2B LINE L1 6104 6997 0 4 899 513 306 22 99 chr11 41279274 41279403 -80564453 - B4 SINE B4 -78 214 97 4 899 423 0 0 0 chr11 41279403 41279450 -80564406 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 899 513 306 22 99 chr11 41279450 41279552 -80564304 - B4 SINE B4 -196 96 1 4 899 255 149 43 0 chr11 41279916 41279963 -80563893 - RLTR47_MM LTR ERV1 -85 447 399 4 899 470 278 99 45 chr11 41280325 41280547 -80563309 + RMER2 LTR ERV1 334 567 0 4 899 273 29 0 0 chr11 41280872 41280906 -80562950 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 4 899 472 221 95 9 chr11 41281137 41281242 -80562614 + RLTR23 LTR ERV1 313 426 -4 4 899 259 325 0 0 chr11 41281339 41281416 -80562440 + RLTR19-int LTR ERVK 4372 4448 -1689 4 899 257 361 0 0 chr11 41281346 41281443 -80562413 + RLTR4_MM-int LTR ERV1 5493 5589 -2012 4 899 484 319 36 33 chr11 41282028 41282362 -80561494 + RLTR6-int LTR ERV1 7342 7676 -102 4 899 1531 150 4 226 chr11 41282448 41282938 -80560918 + RLTR23 LTR ERV1 2 382 -48 4 899 238 216 0 0 chr11 41282938 41282989 -80560867 + A-rich Low_complexity Low_complexity 1 51 0 4 899 750 324 44 44 chr11 41286682 41286956 -80556900 + B4A SINE B4 9 282 -10 4 899 247 247 102 10 chr11 41287537 41287635 -80556221 + MER53 DNA hAT 1 107 -86 4 900 26 0 0 0 chr11 41287716 41287742 -80556114 + AT_rich Low_complexity Low_complexity 1 26 0 4 900 903 325 105 21 chr11 41288566 41288996 -80554860 + MLT-int LTR MaLR 380 845 -890 4 900 489 326 57 30 chr11 41289195 41289507 -80554349 + MLT1A1-int LTR MaLR 1060 1543 -37 4 900 230 347 12 81 chr11 41289526 41289686 -80554170 + ORR1D2 LTR MaLR 3 151 -219 4 900 514 160 110 0 chr11 41289686 41289786 -80554070 + L1VL4 LINE L1 197 307 -5995 4 900 3523 106 6 0 chr11 41289786 41290304 -80553552 + L1VL4 LINE L1 239 759 -5543 4 900 6679 140 10 29 chr11 41290301 41292406 -80551450 + Lx2 LINE L1 4592 6645 -352 4 900 1041 163 52 5 chr11 41292404 41292614 -80551242 + Lx2 LINE L1 6775 6994 -3 4 900 343 229 40 30 chr11 41293082 41293181 -80550675 + MLT1A1 LTR MaLR 309 408 0 4 900 1567 224 42 83 chr11 41293406 41293933 -80549923 + RLTR16 LTR ERVK 1 505 0 4 900 4861 172 90 8 chr11 41294572 41295710 -80548146 - Lx3C LINE L1 -172 6804 5570 4 900 297 0 0 0 chr11 41296167 41296200 -80547656 + (TAA)n Simple_repeat Simple_repeat 2 34 0 4 900 200 249 72 65 chr11 41297391 41297502 -80546354 + MIRb SINE MIR 91 200 -76 4 900 807 271 100 47 chr11 41298288 41298718 -80545138 + RLTR12B LTR ERVK 47 499 -29 4 900 1006 261 50 89 chr11 41299239 41299643 -80544213 + Lx5 LINE L1 6005 6392 -658 4 900 889 137 31 54 chr11 41299644 41299662 -80544194 + L1_Mur3 LINE L1 1126 1138 -6590 4 900 2648 170 58 111 chr11 41299662 41300391 -80543465 + RMER6C LTR ERVK 1 690 0 4 900 2666 169 27 45 chr11 41300391 41301148 -80542708 + L1_Mur3 LINE L1 1139 1889 -3991 4 900 1638 204 8 78 chr11 41301156 41301528 -80542328 + ORR1B1 LTR MaLR 41 386 -8 4 900 1067 203 127 3 chr11 41301532 41301839 -80542017 + L1_Mur3 LINE L1 1886 2230 -3650 4 900 1383 181 56 78 chr11 41301831 41302280 -80541576 + L1_Mur3 LINE L1 2599 3037 -2843 4 900 5365 244 47 86 chr11 41302283 41302548 -80541308 + Lx7 LINE L1 5774 6031 -1665 4 900 513 104 0 0 chr11 41302548 41302625 -80541231 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 900 5365 244 47 86 chr11 41302625 41304010 -80539846 + Lx7 LINE L1 6032 7360 -336 4 900 572 40 13 0 chr11 41304010 41304085 -80539771 + (TC)n Simple_repeat Simple_repeat 2 77 0 4 900 5365 244 47 86 chr11 41304085 41304373 -80539483 + Lx7 LINE L1 7361 7637 -59 4 900 559 185 36 27 chr11 41304416 41304527 -80539329 + PB1D9 SINE Alu 4 115 -5 4 900 885 271 103 7 chr11 41307142 41307443 -80536413 + Lx8 LINE L1 6998 7327 -146 4 900 210 143 0 0 chr11 41307467 41307502 -80536354 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 4 900 1158 288 83 8 chr11 41308450 41308934 -80534922 + Lx8 LINE L1 6808 7327 -146 4 900 502 114 11 11 chr11 41308958 41309047 -80534809 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 4 900 624 195 120 5 chr11 41309712 41309903 -80533953 - Lx7 LINE L1 -1 7695 7483 4 900 504 320 115 90 chr11 41310105 41310548 -80533308 - RMER13A LTR ERVK -406 454 1 4 900 1971 177 28 0 chr11 41311087 41311728 -80532128 + L1VL4 LINE L1 529 1194 -2365 4 900 2097 168 38 7 chr11 41311725 41312150 -80531706 + Lx3C LINE L1 4761 5198 -688 4 900 243 0 0 0 chr11 41312150 41312177 -80531679 + (A)n Simple_repeat Simple_repeat 1 27 0 4 900 6011 189 50 4 chr11 41314422 41316138 -80527718 + Lx3C LINE L1 5184 6974 -2 4 900 486 273 33 0 chr11 41316153 41316274 -80527582 + B1F SINE Alu 5 129 -20 4 900 582 15 0 0 chr11 41316352 41316419 -80527437 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 4 900 3783 134 31 4 chr11 41316476 41317236 -80526620 - Lx2 LINE L1 -741 6256 5476 4 900 571 128 0 52 chr11 41317272 41317387 -80526469 - Lx LINE L1 -8 6646 6538 4 900 793 110 34 20 chr11 41317463 41317611 -80526245 + RMER17B LTR ERVK 314 463 -495 4 900 501 97 0 0 chr11 41317614 41317686 -80526170 + (GA)n Simple_repeat Simple_repeat 2 73 0 4 900 29346 98 3 17 chr11 41317705 41322986 -80520870 + L1Md_F2 LINE L1 380 5586 -297 4 900 7447 80 0 3 chr11 41322986 41323975 -80519881 + L1Md_F2 LINE L1 5587 6572 -10 4 900 800 111 0 8 chr11 41323979 41324106 -80519750 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 4 900 24 0 0 0 chr11 41324135 41324159 -80519697 + AT_rich Low_complexity Low_complexity 1 24 0 4 900 28 91 0 0 chr11 41324625 41324702 -80519154 + AT_rich Low_complexity Low_complexity 1 77 0 4 900 305 309 50 35 chr11 41324743 41324884 -80518972 - L2b LINE L2 0 3375 3233 4 900 362 379 39 11 chr11 41324887 41325170 -80518686 - RMER15-int LTR ERVL -3199 1800 1510 4 900 296 355 119 74 chr11 41325545 41326017 -80517839 + MLT1D LTR MaLR 3 495 -10 4 900 492 299 26 0 chr11 41327031 41327148 -80516708 + RSINE1 SINE B4 3 122 -43 4 900 249 108 0 0 chr11 41327264 41327301 -80516555 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 900 387 60 0 0 chr11 41327723 41327773 -80516083 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 900 261 0 0 0 chr11 41327773 41327801 -80516055 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 900 616 294 67 60 chr11 41327802 41328070 -80515786 + Lx8 LINE L1 6853 7122 -351 4 900 342 0 0 0 chr11 41328268 41328306 -80515550 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 900 294 148 0 0 chr11 41328614 41328668 -80515188 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 4 900 5926 86 35 5 chr11 41328712 41329600 -80514256 - L1_Mus3 LINE L1 -6 6632 5718 4 900 2140 137 72 11 chr11 41329600 41329977 -80513879 - RLTR9D LTR ERVK -3 400 1 4 900 1347 124 29 0 chr11 41329978 41330188 -80513668 - L1_Mm LINE L1 -161 5722 5507 4 900 243 373 59 81 chr11 41330659 41331067 -80512789 - L2 LINE L2 -1254 2165 1767 4 900 279 0 0 0 chr11 41331067 41331098 -80512758 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 900 223 109 17 52 chr11 41331098 41331156 -80512700 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 900 2073 246 102 26 chr11 41331662 41332498 -80511358 - RMER1B Other Other -4 1062 58 4 900 30 59 0 0 chr11 41334895 41334946 -80508910 + AT_rich Low_complexity Low_complexity 1 51 0 4 900 438 75 0 0 chr11 41335232 41335299 -80508557 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 900 26 50 0 0 chr11 41335407 41335447 -80508409 + AT_rich Low_complexity Low_complexity 1 40 0 4 900 203 276 0 0 chr11 41336821 41336879 -80506977 + A-rich Low_complexity Low_complexity 1 58 0 4 900 189 74 0 0 chr11 41336963 41336990 -80506866 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 900 253 418 30 19 chr11 41337127 41337393 -80506463 + L1M4b LINE L1 330 598 -6736 4 900 378 278 342 41 chr11 41337807 41338052 -80505804 + RMER15 LTR ERVL 257 575 0 4 900 412 257 7 29 chr11 41338214 41338354 -80505502 + L1M4b LINE L1 1622 1758 -5576 4 900 226 240 122 20 chr11 41338749 41338847 -80505009 + L1M4b LINE L1 2358 2465 -4869 4 900 489 278 147 7 chr11 41339324 41339610 -80504246 + L1M4b LINE L1 2959 3284 -4050 4 900 361 268 126 62 chr11 41340207 41340715 -80503141 + L1M4b LINE L1 3476 4019 -2981 4 900 206 323 48 0 chr11 41341421 41341483 -80502373 - L2b LINE L2 -53 3322 3258 5 900 538 282 35 59 chr11 41341562 41341829 -80502027 + RLTR12B LTR ERVK 19 270 -298 5 900 264 130 0 0 chr11 41342100 41342146 -80501710 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 900 352 371 13 38 chr11 41342248 41342405 -80501451 - B4A SINE B4 -131 161 9 5 900 313 335 40 6 chr11 41342464 41342641 -80501215 + L1MB8 LINE L1 5334 5516 -668 5 900 425 308 73 64 chr11 41342695 41343240 -80500616 + L1MB8 LINE L1 5608 6157 -21 5 900 1001 281 88 31 chr11 41343919 41344017 -80499839 - MTD LTR MaLR 0 419 313 5 900 708 74 0 0 chr11 41344017 41344112 -80499744 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 5 900 1084 80 12 12 chr11 41344117 41344282 -80499574 + (TTTC)n Simple_repeat Simple_repeat 4 168 0 5 900 1001 285 82 35 chr11 41344282 41344567 -80499289 - MTD LTR MaLR -118 301 1 5 900 195 250 0 20 chr11 41345351 41345400 -80498456 - MIR SINE MIR -179 83 36 5 900 360 0 0 0 chr11 41346281 41346321 -80497535 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 900 234 0 0 0 chr11 41346565 41346591 -80497265 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 900 332 264 22 11 chr11 41347086 41347178 -80496678 + PB1D10 SINE Alu 25 117 0 5 900 1191 312 55 21 chr11 41347409 41347844 -80496012 - Lx8 LINE L1 -776 6697 6248 5 900 347 390 49 31 chr11 41347955 41348180 -80495676 - L1M5 LINE L1 -1101 5045 4817 5 900 2326 46 58 95 chr11 41348383 41348742 -80495114 + ORR1A0 LTR MaLR 1 346 0 5 900 3020 70 41 0 chr11 41348742 41349333 -80494523 + ORR1A0-int LTR MaLR 1 435 -1357 5 900 1117 265 162 31 chr11 41350353 41350766 -80493090 - RMER15 LTR ERVL -48 527 61 5 900 467 286 57 89 chr11 41351479 41351629 -80492227 + L1MA6 LINE L1 5802 5947 -353 5 900 6524 35 1 4 chr11 41351629 41352414 -80491442 - L1Md_F2 LINE L1 -1 6581 5799 5 900 467 286 57 89 chr11 41352414 41352612 -80491244 + L1MA6 LINE L1 5948 6139 -161 5 900 374 337 5 37 chr11 41354088 41354276 -80489580 + B3A SINE B2 1 182 -16 5 900 1641 151 7 11 chr11 41354421 41354708 -80489148 + Lx2 LINE L1 6709 6994 -3 5 900 3603 139 125 53 chr11 41355705 41356131 -80487725 - RMER17A2 LTR ERVK -5 901 446 5 900 3249 38 8 0 chr11 41356131 41356524 -80487332 + MTA_Mm LTR MaLR 1 396 0 5 900 3603 139 125 53 chr11 41356524 41356938 -80486918 - RMER17A2 LTR ERVK -461 445 1 5 900 3211 149 158 12 chr11 41356938 41357583 -80486273 + Lx4B LINE L1 6317 7055 -3 5 900 1409 18 6 0 chr11 41358083 41358251 -80485605 + (TTC)n Simple_repeat Simple_repeat 3 171 0 5 900 624 138 8 84 chr11 41358374 41358493 -80485363 - ORR1B1 LTR MaLR 0 394 285 5 900 229 288 14 113 chr11 41360198 41360339 -80483517 + Tigger1 DNA MER2_type 63 189 -2229 5 900 389 281 116 45 chr11 41360393 41360591 -80483265 + B3 SINE B2 4 215 -1 5 900 768 138 0 0 chr11 41361040 41361170 -80482686 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 5 900 19668 96 2 6 chr11 41361218 41364706 -80479150 - L1_Mus1 LINE L1 0 6567 3093 5 900 428 304 30 106 chr11 41364847 41365020 -80478836 - MLT1F-int LTR MaLR -350 1139 983 5 900 6316 102 12 19 chr11 41365020 41365965 -80477891 - Lx3_Mus LINE L1 0 7009 6072 5 900 428 304 30 106 chr11 41365965 41366056 -80477800 - MLT1F-int LTR MaLR -507 982 895 5 900 350 314 27 82 chr11 41367007 41367191 -80476665 + Lx5 LINE L1 6873 7046 -4 5 900 491 112 0 10 chr11 41367203 41367302 -80476554 + (CATA)n Simple_repeat Simple_repeat 4 101 0 5 900 567 312 78 130 chr11 41368005 41368351 -80475505 + MTD LTR MaLR 48 375 -44 5 900 7036 84 9 37 chr11 41368354 41368470 -80475386 - L1Md_F2 LINE L1 -1 6581 6485 5 900 1674 31 0 0 chr11 41368470 41368663 -80475193 - B2_Mm1t SINE B2 0 193 1 5 900 19275 82 3 8 chr11 41368663 41371907 -80471949 - L1Md_F2 LINE L1 -98 6484 3251 5 900 35090 47 3 3 chr11 41372148 41377368 -80466488 + L1Md_T LINE L1 275 5589 -297 5 900 8308 36 3 0 chr11 41377368 41378361 -80465495 + L1Md_T LINE L1 5590 6585 0 5 900 218 351 13 63 chr11 41378795 41378865 -80464991 + ID2 SINE ID 9 77 -6 5 900 242 87 0 21 chr11 41378865 41378912 -80464944 + (CAA)n Simple_repeat Simple_repeat 1 46 0 5 900 648 0 0 0 chr11 41379471 41379543 -80464313 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 900 702 0 0 0 chr11 41379956 41380034 -80463822 + (TTC)n Simple_repeat Simple_repeat 2 79 0 5 900 4630 46 7 3 chr11 41380069 41380642 -80463214 - L1Md_F2 LINE L1 -2 6580 6006 5 900 5301 20 0 3 chr11 41380642 41381419 -80462437 + L1Md_A LINE L1 5275 6049 -533 5 900 312 132 0 0 chr11 41381419 41381472 -80462384 - Lx LINE L1 -13 6641 6589 5 900 1301 71 0 0 chr11 41381478 41381646 -80462210 - L1_Mus4 LINE L1 -822 5814 5647 5 900 213 194 0 0 chr11 41382592 41382628 -80461228 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 900 594 266 104 63 chr11 41382663 41383028 -80460828 - L1MC LINE L1 -589 5744 5365 5 900 210 37 0 0 chr11 41383032 41383059 -80460797 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 5 900 596 273 20 10 chr11 41383174 41383370 -80460486 - L1MC LINE L1 -896 5250 5053 5 900 588 351 91 45 chr11 41383411 41384073 -80459783 - L1MC LINE L1 -1095 5051 4360 5 900 1534 285 134 20 chr11 41384074 41384633 -80459223 - Lx6 LINE L1 -15 7445 6823 5 900 751 153 100 0 chr11 41384637 41384787 -80459069 + RLTR9A2 LTR ERVK 3 167 -216 5 900 493 218 168 12 chr11 41384830 41384997 -80458859 + ETnERV2-int LTR ERVK 6233 6425 -981 5 900 318 159 14 42 chr11 41385208 41385280 -80458576 + ETnERV2-int LTR ERVK 7331 7400 -6 5 900 1966 132 66 17 chr11 41385283 41385630 -80458226 + RLTR9A2 LTR ERVK 1 364 -19 5 900 2180 190 27 22 chr11 41385640 41386232 -80457624 - Lx6 LINE L1 -1447 6013 5418 5 900 21 36 0 0 chr11 41386437 41386465 -80457391 + AT_rich Low_complexity Low_complexity 1 28 0 5 900 4482 14 0 0 chr11 41387463 41387971 -80455885 - L1Md_A LINE L1 0 6582 6075 5 900 246 62 0 0 chr11 41388054 41388086 -80455770 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 5 900 264 158 0 0 chr11 41389676 41389733 -80454123 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 900 455 294 9 18 chr11 41389733 41389844 -80454012 - PB1D10 SINE Alu -7 110 1 5 900 352 312 48 55 chr11 41390010 41390319 -80453537 + L1MA4A LINE L1 4916 5222 -921 5 900 21 0 0 0 chr11 41390362 41390383 -80453473 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 771 278 152 10 chr11 41390485 41390892 -80452964 + L1MA4A LINE L1 5423 5887 -416 5 900 223 353 24 0 chr11 41391236 41391321 -80452535 + MIR SINE MIR 111 197 -65 5 900 24 0 0 0 chr11 41391475 41391499 -80452357 + AT_rich Low_complexity Low_complexity 1 24 0 5 900 429 378 78 12 chr11 41391565 41391822 -80452034 - B4A SINE B4 -18 274 1 5 900 293 297 23 139 chr11 41391910 41392039 -80451817 - MER77 LTR ERVL -412 195 82 5 900 181 0 69 0 chr11 41392392 41392421 -80451435 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 900 232 241 82 133 chr11 41392991 41393149 -80450707 + LTR89 LTR ERVL? 272 421 -458 5 900 432 97 0 0 chr11 41393418 41393480 -80450376 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 5 900 21 36 0 0 chr11 41394350 41394378 -80449478 + AT_rich Low_complexity Low_complexity 1 28 0 5 900 294 169 0 0 chr11 41395003 41395068 -80448788 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 900 287 395 55 6 chr11 41395241 41395404 -80448452 - LTR79 LTR ERVL -332 195 25 5 900 339 273 10 20 chr11 41396223 41396324 -80447532 + CT-rich Low_complexity Low_complexity 2 101 0 5 900 22 35 0 0 chr11 41396330 41396359 -80447497 + AT_rich Low_complexity Low_complexity 1 29 0 5 900 489 356 7 0 chr11 41396563 41396712 -80447144 - RSINE1 SINE B4 -2 163 14 5 900 22 88 0 0 chr11 41398327 41398384 -80445472 + AT_rich Low_complexity Low_complexity 1 57 0 5 900 8121 24 0 4 chr11 41399231 41400164 -80443692 - RLTR13B3 LTR ERVK 0 929 1 5 900 236 273 8 0 chr11 41400607 41400728 -80443128 + (TA)n Simple_repeat Simple_repeat 2 123 0 5 900 207 0 0 0 chr11 41401334 41401357 -80442499 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 900 257 268 78 44 chr11 41401364 41401454 -80442402 - PB1D10 SINE Alu -22 95 3 5 900 269 369 53 23 chr11 41401554 41401687 -80442169 + RSINE1 SINE B4 29 165 0 5 900 239 27 0 0 chr11 41401843 41401880 -80441976 + Lx2 LINE L1 6957 6993 -4 5 900 40 83 0 0 chr11 41401890 41401986 -80441870 + AT_rich Low_complexity Low_complexity 1 96 0 5 900 1687 262 59 22 chr11 41402389 41402849 -80441007 - Lx6 LINE L1 -169 7291 6815 5 900 351 0 0 0 chr11 41403287 41403326 -80440530 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 900 4488 8 0 0 chr11 41403490 41403989 -80439867 - L1Md_T LINE L1 0 6582 6084 5 900 952 173 31 42 chr11 41404249 41404442 -80439414 + B2_Mm2 SINE B2 1 191 -4 5 900 2738 77 7 51 chr11 41405061 41405471 -80438385 + RLTR9F LTR ERVK 1 392 -23 5 900 185 409 84 46 chr11 41406572 41406904 -80436952 + L2 LINE L2 2679 3030 -389 5 900 1756 182 102 58 chr11 41406904 41407067 -80436789 + RLTR11B LTR ERVK 3 182 -271 5 900 202 29 28 28 chr11 41407067 41407103 -80436753 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 900 1756 182 102 58 chr11 41407103 41407371 -80436485 + RLTR11B LTR ERVK 183 452 -1 5 900 185 409 84 46 chr11 41407371 41407407 -80436449 + L2 LINE L2 3031 3061 -358 5 900 7755 62 5 1 chr11 41407829 41408977 -80434879 - L1Md_F2 LINE L1 -12 6570 5418 5 900 537 191 62 25 chr11 41409578 41409739 -80434117 + Lx9 LINE L1 7477 7643 -1 5 900 590 68 29 10 chr11 41409763 41409867 -80433989 + L1Md_F2 LINE L1 6465 6570 -12 5 900 261 319 55 14 chr11 41409964 41410037 -80433819 + PB1D7 SINE Alu 22 97 -23 5 900 21 0 0 0 chr11 41410191 41410212 -80433644 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 282 295 83 8 chr11 41410448 41410581 -80433275 - MLT1D LTR MaLR -346 159 17 5 900 462 331 86 0 chr11 41410858 41411033 -80432823 + B3A SINE B2 4 193 -5 5 900 210 279 40 105 chr11 41411284 41411360 -80432496 + RSINE1 SINE B4 2 72 -93 5 900 714 293 32 11 chr11 41411293 41411483 -80432373 + B3A SINE B2 5 198 0 5 900 23 92 0 0 chr11 41411727 41411792 -80432064 + AT_rich Low_complexity Low_complexity 1 65 0 5 900 216 300 14 14 chr11 41411823 41411894 -80431962 - MIR SINE MIR -117 145 75 5 900 252 0 0 0 chr11 41411907 41411935 -80431921 + (A)n Simple_repeat Simple_repeat 1 28 0 5 900 195 294 0 0 chr11 41413252 41413303 -80430553 + L3b LINE CR1 236 286 -196 5 900 311 65 22 0 chr11 41413661 41413707 -80430149 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 6 900 537 149 48 24 chr11 41413752 41413876 -80429980 + Lx3B LINE L1 6846 6972 -1 6 900 330 340 18 30 chr11 41413994 41414158 -80429698 + LTR48 LTR ERV1 1 162 -625 6 900 247 272 12 24 chr11 41414304 41414387 -80429469 + (CATTC)n Simple_repeat Simple_repeat 3 84 0 6 900 869 93 0 8 chr11 41415120 41415250 -80428606 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 6 900 480 86 0 0 chr11 41415393 41415463 -80428393 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 900 459 82 0 0 chr11 41415463 41415536 -80428320 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 900 304 292 28 97 chr11 41415666 41415810 -80428046 - MLT1E2 LTR MaLR -489 138 5 6 900 6826 206 76 39 chr11 41416277 41416962 -80426894 + L1_Mur3 LINE L1 894 1635 -4242 6 900 678 25 0 0 chr11 41416962 41417042 -80426814 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 6 900 6826 193 51 57 chr11 41417042 41418449 -80425407 + L1_Mur3 LINE L1 1636 3009 -2868 6 901 1744 175 51 4 chr11 41418946 41419362 -80424494 + L1VL4 LINE L1 797 1255 -5727 6 901 4723 239 53 30 chr11 41419339 41420548 -80423308 + Lx5 LINE L1 5813 7049 -1 6 901 11012 100 2 16 chr11 41421249 41423669 -80420187 + L1_Mus2 LINE L1 4188 6566 0 6 901 270 29 0 0 chr11 41425561 41425595 -80418261 - L1_Mur3 LINE L1 -1521 4359 4326 6 901 316 320 19 10 chr11 41426991 41427095 -80416761 - MTD LTR MaLR -55 364 260 6 901 21 36 0 0 chr11 41427252 41427280 -80416576 + AT_rich Low_complexity Low_complexity 1 28 0 6 901 1120 127 16 6 chr11 41427280 41427462 -80416394 + B2_Mm2 SINE B2 3 186 -9 6 901 180 0 0 0 chr11 41428204 41428224 -80415632 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 6 901 1014 82 0 22 chr11 41429100 41429238 -80414618 + B1_Mus1 SINE Alu 14 148 0 6 901 246 75 36 36 chr11 41429238 41429293 -80414563 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 6 901 15198 150 88 29 chr11 41429319 41430293 -80413563 + Lx LINE L1 364 1388 -4489 6 901 3413 95 23 21 chr11 41430293 41430820 -80413036 + L1_Mus3 LINE L1 6109 6636 -2 6 901 15629 157 47 8 chr11 41430820 41435289 -80408567 + Lx LINE L1 1389 6649 -5 6 901 26 50 0 0 chr11 41435299 41435339 -80408517 + AT_rich Low_complexity Low_complexity 1 40 0 6 901 510 31 0 0 chr11 41435610 41435674 -80408182 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 901 315 394 70 59 chr11 41435731 41435917 -80407939 - B4A SINE B4 -2 290 103 6 901 1595 148 22 41 chr11 41436399 41436715 -80407141 - RLTR22_Mur LTR ERVK -1079 769 460 6 901 1149 82 0 7 chr11 41436849 41436997 -80406859 + B1_Mus1 SINE Alu 2 148 0 6 901 21 36 0 0 chr11 41438904 41438932 -80404924 + AT_rich Low_complexity Low_complexity 1 28 0 6 901 196 263 67 87 chr11 41439948 41440052 -80403804 + MIRc SINE MIR 60 161 -107 6 901 6264 52 8 5 chr11 41440163 41440961 -80402895 + L1Md_F2 LINE L1 5783 6582 0 6 901 739 74 23 47 chr11 41440967 41441095 -80402761 + L1Md_F2 LINE L1 6457 6581 -1 6 901 416 268 36 0 chr11 41442126 41442238 -80401618 + B4A SINE B4 159 274 -18 6 901 252 0 0 0 chr11 41443664 41443692 -80400164 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 901 231 114 0 0 chr11 41443694 41443729 -80400127 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 901 1509 200 103 43 chr11 41443889 41444282 -80399574 + Lx2B LINE L1 6542 6995 -2 6 901 2276 272 59 40 chr11 41444495 41445287 -80398569 + RLTR40 LTR ERVK 4 810 -7 6 901 464 317 7 46 chr11 41445437 41445589 -80398267 + B4 SINE B4 5 150 -142 6 901 293 268 0 43 chr11 41445779 41446070 -80397786 + (CATATA)n Simple_repeat Simple_repeat 1 278 0 6 901 489 237 0 0 chr11 41446107 41446276 -80397580 + (CA)n Simple_repeat Simple_repeat 2 170 0 6 901 186 361 118 18 chr11 41446798 41446967 -80396889 - MIRb SINE MIR -14 254 69 6 901 450 0 0 0 chr11 41447606 41447656 -80396200 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 901 450 114 0 0 chr11 41447656 41447725 -80396131 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 901 22 0 0 0 chr11 41447846 41447868 -80395988 + AT_rich Low_complexity Low_complexity 1 22 0 6 901 540 0 0 0 chr11 41448176 41448236 -80395620 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 6 901 21 57 0 0 chr11 41450769 41450804 -80393052 + AT_rich Low_complexity Low_complexity 1 35 0 6 901 468 0 0 0 chr11 41451011 41451063 -80392793 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 901 225 325 58 33 chr11 41451218 41451339 -80392517 + MER103 DNA DNA 40 163 -3 6 901 1022 219 49 0 chr11 41455062 41455267 -80388589 + B3 SINE B2 2 216 0 6 901 423 0 0 0 chr11 41455366 41455413 -80388443 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 901 280 318 28 18 chr11 41456362 41456471 -80387385 - RSINE1 SINE B4 -53 112 3 6 901 22 56 0 0 chr11 41457191 41457227 -80386629 + AT_rich Low_complexity Low_complexity 1 36 0 6 901 1633 228 129 3 chr11 41457519 41458184 -80385672 + Lx9 LINE L1 6376 7123 -521 6 901 351 65 0 0 chr11 41458239 41458285 -80385571 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 6 901 24 53 0 0 chr11 41460538 41460576 -80383280 + AT_rich Low_complexity Low_complexity 1 38 0 6 901 389 261 0 83 chr11 41461466 41461487 -80382369 + MT2B LTR ERVL 147 157 -444 6 901 655 186 8 0 chr11 41461487 41461605 -80382251 + B1_Mus1 SINE Alu 3 121 -27 6 901 314 264 75 0 chr11 41462661 41462767 -80381089 - LTR90B LTR LTR 0 796 683 6 901 1896 243 169 13 chr11 41463005 41463602 -80380254 - Lx9 LINE L1 -13 7631 6942 6 901 844 252 28 0 chr11 41463603 41463817 -80380039 + Lx9 LINE L1 6685 6904 -740 6 901 359 404 9 13 chr11 41464138 41464366 -80379490 + Lx7 LINE L1 7060 7286 -410 6 901 300 246 94 60 chr11 41464445 41464562 -80379294 + HAL1-3A_ME LINE L1 2284 2404 -454 6 901 351 329 73 7 chr11 41465115 41465265 -80378591 + MER70-int LTR ERVL 4750 4909 -114 6 901 1359 71 0 0 chr11 41465607 41465790 -80378066 - L1Md_F2 LINE L1 -12 6570 6388 6 901 1324 274 89 17 chr11 41466102 41466517 -80377339 + MER70A LTR ERVL 4 448 -24 6 901 343 174 68 17 chr11 41467039 41467156 -80376700 + Lx9 LINE L1 7520 7642 -2 6 901 688 315 11 5 chr11 41467339 41467524 -80376332 - B3 SINE B2 -5 211 26 6 901 436 328 43 11 chr11 41469144 41469329 -80374527 + B3A SINE B2 2 192 -6 6 901 926 252 0 5 chr11 41469862 41470073 -80373783 + B3 SINE B2 2 211 -5 6 901 219 139 0 0 chr11 41470723 41470759 -80373097 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 901 237 325 65 32 chr11 41471287 41471411 -80372445 + MTE2b LTR MaLR 239 366 -13 6 901 4622 109 37 4 chr11 41471423 41472121 -80371735 + Lx3A LINE L1 6256 6976 -5 6 901 454 335 75 77 chr11 41472601 41472953 -80370903 + MTD LTR MaLR 19 362 -57 6 901 351 0 0 0 chr11 41472953 41472992 -80370864 + (CAA)n Simple_repeat Simple_repeat 2 40 0 6 901 454 335 75 77 chr11 41472992 41473027 -80370829 + MTD LTR MaLR 363 405 -14 6 901 328 331 45 101 chr11 41474120 41474406 -80369450 - ORR1E LTR MaLR -98 272 3 6 901 1443 341 74 27 chr11 41474419 41475121 -80368735 - MTE-int LTR MaLR -67 1513 779 6 901 11446 87 28 9 chr11 41475187 41477510 -80366346 + L1_Mus2 LINE L1 4218 6557 -9 6 901 752 74 202 16 chr11 41477510 41477634 -80366222 + B1_Mm SINE Alu 1 147 0 6 901 7023 72 35 21 chr11 41477634 41477673 -80366183 + L1_Mus2 LINE L1 6558 6566 0 6 901 773 335 115 61 chr11 41477795 41478351 -80365505 - MTE-int LTR MaLR -955 625 40 6 901 432 0 0 0 chr11 41478996 41479044 -80364812 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 6 901 833 96 8 0 chr11 41479044 41479168 -80364688 + (TTTC)n Simple_repeat Simple_repeat 2 127 0 6 901 1290 122 5 0 chr11 41479181 41479369 -80364487 + B2_Mm1t SINE B2 2 190 -3 6 901 198 0 0 0 chr11 41479738 41479760 -80364096 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 6 901 226 299 42 49 chr11 41479806 41479950 -80363906 + Charlie1 DNA MER1_type 2604 2746 -35 6 901 318 26 0 0 chr11 41480004 41480043 -80363813 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 901 249 245 0 0 chr11 41480089 41480142 -80363714 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 901 315 0 0 0 chr11 41480144 41480179 -80363677 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 6 901 23 33 0 0 chr11 41480237 41480267 -80363589 + AT_rich Low_complexity Low_complexity 1 30 0 6 901 2684 117 24 5 chr11 41480704 41481115 -80362741 + BGLII LTR ERVK 1 419 -2 6 901 400 272 94 75 chr11 41483163 41483293 -80360563 + B3 SINE B2 30 166 -50 6 901 396 0 0 0 chr11 41483293 41483337 -80360519 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 901 326 272 94 75 chr11 41483337 41483365 -80360491 + B2_Mm1t SINE B2 163 191 -2 6 901 1212 75 37 5 chr11 41483914 41484103 -80359753 - L1_Mus3 LINE L1 0 6638 6444 6 901 468 0 0 0 chr11 41484133 41484185 -80359671 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 901 1088 270 49 25 chr11 41484267 41484632 -80359224 + ORR1D1 LTR MaLR 1 374 0 6 901 23 0 0 0 chr11 41484984 41485007 -80358849 + AT_rich Low_complexity Low_complexity 1 23 0 6 901 438 224 132 38 chr11 41485123 41485336 -80358520 - Lx9 LINE L1 -2 7642 7410 6 901 315 0 0 0 chr11 41485528 41485563 -80358293 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 6 901 34057 72 3 1 chr11 41486223 41491848 -80352008 - L1Md_F2 LINE L1 -1 6581 942 6 901 5675 37 1 0 chr11 41491848 41492529 -80351327 - L1Md_F3 LINE L1 -2 6582 5901 6 901 5471 70 21 1 chr11 41492529 41493255 -80350601 + L1Md_F3 LINE L1 5143 5882 -1 6 901 4097 87 12 0 chr11 41493252 41493814 -80350042 - L1Md_F2 LINE L1 -5661 955 387 6 901 519 278 139 0 chr11 41493997 41494177 -80349679 + Lx8 LINE L1 6968 7172 -301 6 901 428 0 19 0 chr11 41494308 41494360 -80349496 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 901 189 0 0 0 chr11 41496907 41496928 -80346928 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 901 300 245 9 64 chr11 41496985 41497094 -80346762 + MER33 DNA MER1_type 194 296 -28 6 901 34 0 0 0 chr11 41498558 41498592 -80345264 + AT_rich Low_complexity Low_complexity 1 34 0 6 901 1015 117 7 0 chr11 41498594 41498739 -80345117 - B1_Mus1 SINE Alu 0 148 3 6 901 231 36 0 0 chr11 41498772 41498800 -80345056 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 901 25 31 0 0 chr11 41498809 41498841 -80345015 + AT_rich Low_complexity Low_complexity 1 32 0 7 901 571 324 29 24 chr11 41498916 41499125 -80344731 + B4 SINE B4 17 226 -66 7 901 282 73 0 0 chr11 41499127 41499168 -80344688 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 901 23 0 0 0 chr11 41499170 41499193 -80344663 + AT_rich Low_complexity Low_complexity 1 23 0 7 901 4185 76 34 9 chr11 41499239 41499599 -80344257 - L1_Mus2 LINE L1 -130 6436 6068 7 901 567 0 0 0 chr11 41499599 41499662 -80344194 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 7 901 4185 76 34 9 chr11 41499662 41499882 -80343974 - L1_Mus2 LINE L1 -499 6067 5843 7 901 708 138 16 0 chr11 41499877 41500000 -80343856 + L1_Mm LINE L1 4580 4704 -1179 7 901 225 65 0 0 chr11 41500000 41500031 -80343825 + L1_Mur2 LINE L1 4699 4729 -1148 1 901 192 40 0 0 chr11 41500040 41500065 -80343791 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2 901 7587 107 2 6 chr11 41500069 41501175 -80342681 + L1_Mm LINE L1 4730 5830 -53 3 901 252 0 0 0 chr11 41501626 41501654 -80342202 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 901 300 286 120 28 chr11 41502003 41502111 -80341745 + RSINE1 SINE B4 44 161 -4 5 901 777 278 93 49 chr11 41502250 41502881 -80340975 + L1M2 LINE L1 3247 3905 -2238 6 901 589 281 148 16 chr11 41502894 41503144 -80340712 - Lx8 LINE L1 -959 6514 6232 7 901 189 74 0 0 chr11 41503151 41503178 -80340678 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 901 1455 222 106 13 chr11 41503181 41503578 -80340278 - RMER10A LTR ERVL -8 434 1 9 901 1597 259 40 16 chr11 41503717 41504164 -80339692 + Lx8 LINE L1 6528 6985 -488 1 901 225 260 153 20 chr11 41504170 41504268 -80339588 - RLTR13D1 LTR ERVK -228 578 468 1 901 646 291 76 52 chr11 41504291 41504581 -80339275 + Lx8 LINE L1 7171 7467 -6 1 901 364 306 9 9 chr11 41504628 41504778 -80339078 + L1M2 LINE L1 4036 4158 -1722 6 901 252 382 29 0 chr11 41505200 41505302 -80338554 + B1F1 SINE Alu 36 140 -9 1 901 273 235 0 0 chr11 41506167 41506252 -80337604 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 901 21 36 0 0 chr11 41506279 41506307 -80337549 + AT_rich Low_complexity Low_complexity 1 28 0 1 901 1023 65 0 35 chr11 41506687 41506698 -80337158 - B1_Mus1 SINE Alu 0 148 141 1 901 246 32 0 0 chr11 41506698 41506729 -80337127 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 1 901 1023 65 0 35 chr11 41506729 41506860 -80336996 - B1_Mus1 SINE Alu -8 140 11 1 901 381 22 0 0 chr11 41506928 41506974 -80336882 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 901 3844 198 18 61 chr11 41506974 41507914 -80335942 - RMER13B LTR ERVK -4 904 5 1 901 192 143 0 0 chr11 41507954 41507996 -80335860 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 901 270 95 0 0 chr11 41507999 41508041 -80335815 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2 901 268 318 115 26 chr11 41508078 41508191 -80335665 - RSINE1 SINE B4 -30 135 13 2 901 2388 200 48 30 chr11 41509042 41509290 -80334566 + RLTR12A LTR ERVK 1 250 -318 2 901 1164 65 0 0 chr11 41509290 41509444 -80334412 + (GGGAGA)n Simple_repeat Simple_repeat 3 156 0 2 901 2388 200 48 30 chr11 41509444 41509753 -80334103 + RLTR12A LTR ERVK 251 567 -1 2 901 1002 109 0 0 chr11 41510426 41510564 -80333292 + B1_Mus1 SINE Alu 2 139 -9 2 901 291 349 0 0 chr11 41511108 41511191 -80332665 + PB1D10 SINE Alu 17 99 -18 2 901 681 186 0 37 chr11 41512318 41512452 -80331404 + B1_Mur3 SINE Alu 21 149 0 2 901 312 252 81 75 chr11 41512452 41512746 -80331110 - Lx7 LINE L1 -73 7623 7313 2 901 234 230 59 24 chr11 41512746 41512915 -80330941 + (TA)n Simple_repeat Simple_repeat 2 176 0 2 901 235 67 21 43 chr11 41512954 41513001 -80330855 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 2 901 290 250 29 9 chr11 41513013 41513118 -80330738 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 901 4245 243 34 6 chr11 41513147 41514116 -80329740 - Lx7 LINE L1 -356 7340 6345 2 901 321 26 0 0 chr11 41514742 41514780 -80329076 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 901 636 14 0 0 chr11 41514780 41514852 -80329004 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 901 4000 102 31 0 chr11 41515289 41515898 -80327958 - L1_Mus4 LINE L1 0 6636 6039 3 901 22 56 0 0 chr11 41516713 41516749 -80327107 + AT_rich Low_complexity Low_complexity 1 36 0 3 901 380 286 179 11 chr11 41516834 41517018 -80326838 - B3 SINE B2 0 216 2 3 901 41126 7 0 0 chr11 41517424 41523999 -80319857 - L1Md_A LINE L1 0 6582 7 3 901 1522 277 79 13 chr11 41524523 41524980 -80318876 - Lx6 LINE L1 -4 7456 6970 3 901 237 171 0 0 chr11 41524981 41525022 -80318834 + ORR1A4 LTR MaLR 3 43 -286 3 901 1619 103 4 8 chr11 41525022 41525258 -80318598 - Lx LINE L1 -186 6468 6234 3 901 426 165 193 41 chr11 41525253 41525398 -80318458 + Lx LINE L1 6485 6651 -3 3 901 1771 133 6 73 chr11 41525436 41525751 -80318105 + ORR1A4 LTR MaLR 30 323 -6 3 901 1189 238 138 6 chr11 41525762 41525829 -80318027 - Lx6 LINE L1 -502 6958 6879 3 901 537 92 0 0 chr11 41525829 41525905 -80317951 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 901 1189 238 138 6 chr11 41525905 41526192 -80317664 - Lx6 LINE L1 -582 6878 6557 3 901 424 267 44 102 chr11 41526192 41526248 -80317608 - CYRA11_Mm Unknown Y-chromosome -183 434 176 4 901 1167 202 9 5 chr11 41526248 41526467 -80317389 + URR1B DNA MER1_type 1 220 -5 4 901 21 57 0 0 chr11 41527084 41527119 -80316737 + AT_rich Low_complexity Low_complexity 1 35 0 4 901 866 311 106 19 chr11 41527369 41527786 -80316070 - Lx8 LINE L1 -18 7455 7003 4 901 279 0 0 0 chr11 41528041 41528072 -80315784 + (T)n Simple_repeat Simple_repeat 1 31 0 4 901 21 0 0 0 chr11 41528513 41528534 -80315322 + AT_rich Low_complexity Low_complexity 1 21 0 4 901 517 184 73 20 chr11 41531264 41531414 -80312442 - Lx9 LINE L1 -5 7639 7482 4 901 508 268 24 0 chr11 41531416 41531539 -80312317 + Lx9 LINE L1 7267 7392 -252 4 901 187 125 41 20 chr11 41531590 41531639 -80312217 + CT-rich Low_complexity Low_complexity 1 50 0 4 901 404 360 72 11 chr11 41532147 41532327 -80311529 + LTR16A LTR ERVL 209 399 -52 5 901 22 0 0 0 chr11 41532987 41533009 -80310847 + AT_rich Low_complexity Low_complexity 1 22 0 5 901 619 321 60 28 chr11 41533265 41533547 -80310309 + B4A SINE B4 1 291 -1 5 901 210 147 0 0 chr11 41533569 41533603 -80310253 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 901 620 296 111 25 chr11 41534924 41535239 -80308617 + ORSL-2b DNA Tip100 126 467 -41 5 901 370 333 66 28 chr11 41535519 41535701 -80308155 - MER90a LTR ERV1 -414 200 12 5 901 27 0 0 0 chr11 41536885 41536912 -80306944 + AT_rich Low_complexity Low_complexity 1 27 0 5 901 184 269 49 37 chr11 41537831 41537912 -80305944 - MIRb SINE MIR -41 227 146 5 901 537 307 76 46 chr11 41539059 41539322 -80304534 + B4 SINE B4 12 282 -10 5 901 2535 74 22 11 chr11 41540844 41541199 -80302657 + L1Md_F2 LINE L1 6205 6563 -19 5 901 186 43 0 0 chr11 41541202 41541225 -80302631 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 6 901 396 174 0 0 chr11 41541763 41541855 -80302001 + GA-rich Low_complexity Low_complexity 1 92 0 6 901 28 29 0 0 chr11 41542330 41542365 -80301491 + AT_rich Low_complexity Low_complexity 1 35 0 6 901 1117 190 36 0 chr11 41542790 41543011 -80300845 - MT2B LTR ERVL -132 469 241 6 901 781 196 0 0 chr11 41543011 41543144 -80300712 - MT2B LTR ERVL -468 133 1 6 901 1755 186 13 64 chr11 41543187 41543560 -80300296 - ORR1B1 LTR MaLR 0 394 41 6 901 804 11 0 0 chr11 41543562 41543655 -80300201 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 901 291 248 70 17 chr11 41543661 41543776 -80300080 + Lx9 LINE L1 7517 7637 -7 6 901 217 282 11 34 chr11 41544112 41544200 -80299656 + (CATA)n Simple_repeat Simple_repeat 2 87 0 6 901 652 284 58 19 chr11 41544203 41544411 -80299445 - B3 SINE B2 0 216 1 6 901 933 279 25 92 chr11 41544435 41544924 -80298932 - L1MA7 LINE L1 -365 5926 5471 6 901 3584 269 84 15 chr11 41544929 41545999 -80297857 - Lx5 LINE L1 -8 7042 5899 7 901 2271 175 60 4 chr11 41545995 41546511 -80297345 - L1_Mur2 LINE L1 -2209 3668 3124 7 901 1730 274 31 15 chr11 41546592 41547047 -80296809 - Lx9 LINE L1 -841 6803 6342 7 901 378 0 0 0 chr11 41547052 41547094 -80296762 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 901 32 0 0 0 chr11 41547162 41547194 -80296662 + AT_rich Low_complexity Low_complexity 1 32 0 7 112 33880 104 24 5 chr11 41547394 41553850 -80290006 - L1Md_F2 LINE L1 -2 6580 31 7 902 284 310 39 20 chr11 41554132 41554234 -80289622 + RMER1B Other Other 34 137 -929 7 902 1874 281 34 60 chr11 41554468 41555224 -80288632 + RMER1C Other Other 602 1338 -4 7 902 360 0 0 0 chr11 41555926 41555966 -80287890 + (TATG)n Simple_repeat Simple_repeat 1 40 0 7 902 373 313 48 89 chr11 41555986 41556323 -80287533 + MLT2B1 LTR ERVL 93 521 -46 7 902 1150 188 0 33 chr11 41556323 41556537 -80287319 - ORR1C2 LTR MaLR -3 381 175 7 902 342 123 0 0 chr11 41556540 41556597 -80287259 + (GA)n Simple_repeat Simple_repeat 1 57 0 8 902 571 258 62 57 chr11 41556597 41556790 -80287066 - ORR1C2 LTR MaLR -190 194 1 7 902 336 24 0 0 chr11 41556833 41556874 -80286982 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 8 902 331 372 70 40 chr11 41557085 41557385 -80286471 - Charlie2a DNA MER1_type -2548 313 5 8 902 223 295 116 0 chr11 41557466 41557561 -80286295 + MER5B DNA MER1_type 46 151 -27 8 902 199 318 215 43 chr11 41558572 41558805 -80285051 + L2a LINE L2 3098 3370 -56 8 902 672 24 0 0 chr11 41559599 41559681 -80284175 + (GA)n Simple_repeat Simple_repeat 1 82 0 8 902 365 158 219 0 chr11 41559868 41559982 -80283874 + Lx9 LINE L1 7505 7643 -1 8 902 7278 44 7 0 chr11 41560474 41561436 -80282420 - L1Md_F2 LINE L1 -641 5941 4976 8 902 422 324 9 0 chr11 41561675 41561783 -80282073 + PB1 SINE Alu 1 109 -18 8 902 255 226 64 11 chr11 41561971 41562065 -80281791 + Lx9 LINE L1 7544 7642 -2 8 902 23 33 0 0 chr11 41562067 41562097 -80281759 + AT_rich Low_complexity Low_complexity 1 30 0 9 902 1046 128 0 0 chr11 41564179 41564327 -80279529 + B1_Mus1 SINE Alu 1 148 0 9 902 243 0 0 0 chr11 41564327 41564354 -80279502 + (A)n Simple_repeat Simple_repeat 1 27 0 9 902 1225 105 17 0 chr11 41566335 41566516 -80277340 - B2_Mm2 SINE B2 0 195 12 9 902 359 338 26 19 chr11 41566660 41566814 -80277042 + MER44B DNA MER2_type 9 163 -387 9 902 686 301 64 35 chr11 41566825 41567107 -80276749 + B4A SINE B4 2 291 -1 9 902 432 143 0 0 chr11 41567125 41567209 -80276647 + (CA)n Simple_repeat Simple_repeat 1 84 0 9 902 231 189 0 0 chr11 41567254 41567291 -80276565 + B3A SINE B2 7 43 -155 9 902 1446 76 0 0 chr11 41567535 41567733 -80276123 - L1Md_F2 LINE L1 -12 6570 6373 9 902 5102 127 31 0 chr11 41568308 41569113 -80274743 + L1_Mus3 LINE L1 5804 6633 -5 9 902 254 214 11 0 chr11 41570067 41570156 -80273700 + GA-rich Low_complexity Low_complexity 1 90 0 1 902 6762 96 11 5 chr11 41570373 41571320 -80272536 - L1_Mus2 LINE L1 0 6566 5615 1 902 2415 116 50 110 chr11 41571320 41571853 -80272003 - ETnERV2-int LTR ERVK -4663 2581 2081 1 902 1292 72 0 11 chr11 41571853 41572035 -80271821 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 902 2415 116 50 110 chr11 41572035 41572046 -80271810 - ETnERV2-int LTR ERVK -5164 2080 2070 1 902 406 192 29 9 chr11 41572048 41572153 -80271703 + CT-rich Low_complexity Low_complexity 1 107 0 1 902 3592 158 40 40 chr11 41572153 41572181 -80271675 - ETnERV2-int LTR ERVK -6329 1077 1054 1 902 558 0 0 0 chr11 41572181 41572243 -80271613 + (TTTCC)n Simple_repeat Simple_repeat 2 63 0 1 902 3592 158 40 40 chr11 41572243 41572919 -80270937 - ETnERV2-int LTR ERVK -6353 1053 373 1 902 492 46 0 15 chr11 41572925 41572991 -80270865 + L1_Mm LINE L1 4689 4753 -1130 1 902 586 255 53 39 chr11 41573256 41573464 -80270392 + LTRIS5 LTR ERV1 237 447 0 1 902 7632 91 4 7 chr11 41573464 41574774 -80269082 + L1_Mus2 LINE L1 4750 6053 -513 1 902 3217 39 5 0 chr11 41575747 41576130 -80267726 - IAPEY_LTR LTR ERVK 0 385 1 1 902 317 288 156 24 chr11 41576580 41576850 -80267006 - L1_Mur1 LINE L1 -258 5628 5322 1 902 244 226 16 0 chr11 41576874 41576936 -80266920 + Lx8 LINE L1 6753 6815 -658 1 902 431 309 20 13 chr11 41576975 41577126 -80266730 + Lx8 LINE L1 6801 6952 -521 1 902 7152 111 4 8 chr11 41577249 41578374 -80265482 - L1_Mus3 LINE L1 0 6638 5519 1 902 193 0 61 30 chr11 41578584 41578617 -80265239 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 902 302 100 17 0 chr11 41579424 41579484 -80264372 + (TTTTTG)n Simple_repeat Simple_repeat 4 64 0 1 902 1136 68 0 0 chr11 41579495 41579641 -80264215 - B1_Mm SINE Alu -1 146 1 1 902 9637 21 0 0 chr11 41579788 41581578 -80262278 - L1Md_T LINE L1 0 6582 4793 1 902 441 0 0 0 chr11 41582657 41582706 -80261150 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 902 347 316 214 0 chr11 41582783 41582970 -80260886 - B4A SINE B4 -59 233 7 1 902 261 0 0 0 chr11 41584583 41584612 -80259244 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 902 501 314 114 65 chr11 41584770 41585039 -80258817 - MTD LTR MaLR -19 400 123 1 902 5506 121 15 18 chr11 41585039 41585923 -80257933 + Lx3A LINE L1 6085 6965 -16 1 902 798 109 0 0 chr11 41585928 41586047 -80257809 + (GGAA)n Simple_repeat Simple_repeat 4 122 0 1 902 501 314 114 65 chr11 41586047 41586139 -80257717 - MTD LTR MaLR -302 117 15 1 902 258 358 8 8 chr11 41586148 41586269 -80257587 - Lx8 LINE L1 -298 7175 7055 1 902 225 0 0 0 chr11 41586743 41586768 -80257088 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1 902 326 59 0 0 chr11 41587723 41587774 -80256082 + L1_Mus1 LINE L1 6516 6566 -1 1 902 360 317 0 0 chr11 41588250 41588332 -80255524 - B1_Mur3 SINE Alu -66 83 2 1 902 27 62 0 0 chr11 41589307 41589355 -80254501 + AT_rich Low_complexity Low_complexity 1 48 0 1 902 309 135 0 0 chr11 41589394 41589446 -80254410 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 902 242 264 0 0 chr11 41590276 41590329 -80253527 + MER53 DNA hAT 14 66 -127 1 902 22 35 0 0 chr11 41590625 41590654 -80253202 + AT_rich Low_complexity Low_complexity 1 29 0 1 902 334 188 11 23 chr11 41591361 41591448 -80252408 + CT-rich Low_complexity Low_complexity 6 91 0 1 902 450 94 0 0 chr11 41591462 41591526 -80252330 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 902 599 355 49 0 chr11 41591869 41592072 -80251784 - ID_B1 SINE B4 -5 219 7 1 902 397 252 89 32 chr11 41592544 41592667 -80251189 + B1_Mur4 SINE Alu 1 130 -20 1 902 22 35 0 0 chr11 41593700 41593729 -80250127 + AT_rich Low_complexity Low_complexity 1 29 0 1 902 681 13 0 0 chr11 41593850 41593928 -80249928 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 1 902 1794 58 4 4 chr11 41593928 41594171 -80249685 - L1_Mur1 LINE L1 -473 5413 5171 1 902 279 0 0 0 chr11 41594596 41594627 -80249229 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1 902 416 308 135 41 chr11 41595187 41595431 -80248425 + Lx8 LINE L1 7061 7327 -146 1 902 38 22 0 0 chr11 41595536 41595581 -80248275 + AT_rich Low_complexity Low_complexity 1 45 0 1 902 24 0 0 0 chr11 41596115 41596139 -80247717 + AT_rich Low_complexity Low_complexity 1 24 0 1 902 834 86 0 0 chr11 41596803 41596919 -80246937 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 902 403 311 96 0 chr11 41596938 41596992 -80246864 - B3A SINE B2 -50 148 92 1 902 5150 65 7 0 chr11 41596992 41597665 -80246191 - L1Md_F2 LINE L1 -1 6581 5904 1 902 403 311 96 0 chr11 41597665 41597745 -80246111 - B3A SINE B2 -107 91 2 1 902 1034 87 17 6 chr11 41597887 41598061 -80245795 + (TAGA)n Simple_repeat Simple_repeat 1 176 0 1 902 198 71 0 0 chr11 41598064 41598092 -80245764 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1 902 313 332 107 36 chr11 41598311 41598536 -80245320 - L1MEf LINE L1 -3524 3020 2780 1 902 369 231 9 154 chr11 41598656 41598793 -80245063 - B1F SINE Alu -4 113 1 1 902 219 279 0 0 chr11 41598755 41598798 -80245058 - B4 SINE B4 -169 123 81 1 902 334 319 167 19 chr11 41598878 41599433 -80244423 - L1MC2 LINE L1 -61 6272 5655 1 902 353 282 94 79 chr11 41599462 41599728 -80244128 - L1MEf LINE L1 -4180 2460 2191 1 902 324 367 70 80 chr11 41600065 41600352 -80243504 - MER21B LTR ERV1 -559 304 21 1 902 234 0 0 0 chr11 41600806 41600832 -80243024 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 1 902 246 312 76 46 chr11 41601045 41601176 -80242680 + Charlie2a DNA MER1_type 58 192 -2669 1 902 231 325 113 8 chr11 41601279 41601403 -80242453 - L1MEf LINE L1 -6387 160 24 1 902 202 339 97 9 chr11 41601431 41601544 -80242312 - MIRb SINE MIR -34 234 112 1 902 22 35 0 0 chr11 41602423 41602452 -80241404 + AT_rich Low_complexity Low_complexity 1 29 0 1 902 309 68 0 0 chr11 41602467 41602511 -80241345 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 902 251 348 33 0 chr11 41603660 41603752 -80240104 + MER102b DNA MER1_type 242 336 -5 1 902 527 182 204 60 chr11 41604052 41604268 -80239588 - RMER21B LTR ERV1 -278 564 318 1 902 656 255 104 26 chr11 41604299 41604492 -80239364 - RMER21B LTR ERV1 -633 209 2 1 902 573 15 0 0 chr11 41604741 41604807 -80239049 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 902 1452 29 0 0 chr11 41606239 41606412 -80237444 + (TG)n Simple_repeat Simple_repeat 1 173 0 1 902 465 19 0 0 chr11 41606442 41606496 -80237360 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 902 396 0 0 0 chr11 41607263 41607307 -80236549 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 902 340 292 73 41 chr11 41607354 41607572 -80236284 - L1MD2 LINE L1 -463 5896 5672 1 902 856 298 99 29 chr11 41607662 41608046 -80235810 + RMER5 LTR ERV1 120 530 -4 1 902 774 328 126 10 chr11 41608102 41608604 -80235252 + L1MCa LINE L1 1 560 -5948 1 902 1508 272 26 13 chr11 41609081 41609433 -80234423 + MTC LTR MaLR 1 357 -64 1 902 754 166 89 3 chr11 41609433 41609592 -80234264 - RMER19B LTR ERVK 0 902 756 1 902 19157 99 29 6 chr11 41609592 41613611 -80230245 + L1_Mur1 LINE L1 235 4666 -1220 1 902 3854 105 32 3 chr11 41613618 41614203 -80229653 - L1_Mus3 LINE L1 -8 6630 6029 1 902 1046 101 81 23 chr11 41614203 41614375 -80229481 + L1_Mur1 LINE L1 5392 5573 -313 1 902 2130 139 9 12 chr11 41614373 41614715 -80229141 - L1_Mm LINE L1 -254 5629 5289 1 902 311 246 45 53 chr11 41614750 41614883 -80228973 + L1M4 LINE L1 5396 5527 -652 1 902 263 266 32 0 chr11 41614932 41615026 -80228830 - L1MEf LINE L1 -4940 1568 1472 1 902 560 264 28 0 chr11 41615135 41615279 -80228577 + Lx7 LINE L1 6686 6833 -863 1 902 3822 210 60 9 chr11 41615821 41616624 -80227232 - Lx5 LINE L1 -3 7047 6204 1 902 1403 220 25 3 chr11 41616664 41616988 -80226868 + Lx5 LINE L1 5832 6162 -888 1 902 342 340 43 34 chr11 41617175 41617382 -80226474 - L1MEf LINE L1 -5364 1053 845 1 902 209 57 0 28 chr11 41617510 41617546 -80226310 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 902 271 268 69 11 chr11 41617557 41617644 -80226212 + MER88 LTR ERVL 90 181 -283 1 902 354 138 0 0 chr11 41618276 41618334 -80225522 + (TTG)n Simple_repeat Simple_repeat 1 58 0 1 902 2407 215 55 15 chr11 41618850 41619394 -80224462 - RLTR20A2 LTR ERVK -12 566 1 1 902 25 0 0 0 chr11 41619803 41619828 -80224028 + AT_rich Low_complexity Low_complexity 1 25 0 1 902 264 300 69 10 chr11 41621001 41621102 -80222754 + PB1D7 SINE Alu 3 109 -11 1 902 437 281 25 0 chr11 41621663 41621784 -80222072 - ORR1D1 LTR MaLR -250 124 1 1 902 922 269 50 64 chr11 41622034 41622266 -80221590 + Lx6 LINE L1 7102 7337 -123 1 902 1388 174 43 157 chr11 41622266 41622751 -80221105 - RLTR23 LTR ERV1 0 430 1 1 902 922 269 50 64 chr11 41622751 41622876 -80220980 + Lx6 LINE L1 7338 7454 -6 1 902 624 295 0 6 chr11 41623026 41623183 -80220673 + B3A SINE B2 1 156 -42 1 902 849 253 33 47 chr11 41623267 41623459 -80220397 - RLTR30 LTR ERV1 0 379 180 1 902 2599 73 128 5 chr11 41623459 41623833 -80220023 + RLTR9B2 LTR ERVK 1 420 0 1 902 849 253 33 47 chr11 41623833 41623914 -80219942 - RLTR30 LTR ERV1 -200 179 110 1 902 3325 206 31 83 chr11 41623924 41624740 -80219116 + RLTR25B LTR ERVK 1 773 -255 1 902 3366 140 54 7 chr11 41624798 41625373 -80218483 - Lx3A LINE L1 -7 6974 6373 1 902 896 227 29 100 chr11 41625744 41625864 -80217992 + RLTR25B LTR ERVK 742 847 -181 1 902 429 104 0 0 chr11 41625864 41625941 -80217915 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 902 691 53 44 0 chr11 41625941 41626053 -80217803 + (GA)n Simple_repeat Simple_repeat 2 119 0 1 902 896 227 29 100 chr11 41626053 41626240 -80217616 + RLTR25B LTR ERVK 848 1027 -1 1 902 529 226 17 9 chr11 41626240 41626343 -80217513 - RLTR30 LTR ERV1 -275 104 1 1 902 1156 289 102 58 chr11 41627282 41627819 -80216037 + Lx8 LINE L1 6757 7317 -156 1 902 255 103 0 0 chr11 41627819 41627858 -80215998 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 902 444 37 0 0 chr11 41628011 41628065 -80215791 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 902 658 278 31 36 chr11 41628781 41628975 -80214881 + RMER30 DNA MER1_type 10 202 0 1 902 198 314 43 0 chr11 41631321 41631391 -80212465 - MIRb SINE MIR -20 248 176 1 902 193 282 89 13 chr11 41632047 41632126 -80211730 - L2c LINE L2 -62 3325 3241 1 902 21 0 0 0 chr11 41633627 41633648 -80210208 + AT_rich Low_complexity Low_complexity 1 21 0 1 902 24 67 0 0 chr11 41634144 41634189 -80209667 + AT_rich Low_complexity Low_complexity 1 45 0 1 902 325 383 113 38 chr11 41634783 41635049 -80208807 + MER74A LTR ERVL 109 394 -164 2 902 593 322 39 20 chr11 41635534 41635737 -80208119 + ID_B1 SINE B4 1 207 -17 2 902 330 362 94 39 chr11 41635758 41635816 -80208040 - MER34A LTR ERV1 -69 502 441 2 902 1319 196 152 49 chr11 41635816 41636144 -80207712 - ORR1B2 LTR MaLR -4 363 2 2 902 330 362 94 39 chr11 41636144 41636467 -80207389 - MER34A LTR ERV1 -131 440 102 2 902 243 0 0 0 chr11 41636467 41636494 -80207362 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 2 902 1515 28 0 0 chr11 41636494 41636674 -80207182 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 902 248 289 127 67 chr11 41637571 41637871 -80205985 + LTR37A LTR ERV1 33 350 -76 2 902 782 258 24 9 chr11 41637910 41638121 -80205735 - B3 SINE B2 -2 214 1 2 902 22 0 0 0 chr11 41638145 41638167 -80205689 + AT_rich Low_complexity Low_complexity 1 22 0 2 902 314 306 37 80 chr11 41639219 41639371 -80204485 - RMER12 LTR ERVK -467 855 709 2 902 615 92 0 0 chr11 41639371 41639458 -80204398 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 902 314 306 37 80 chr11 41639458 41639493 -80204363 - RMER12 LTR ERVK -614 708 676 2 902 470 223 41 0 chr11 41639522 41639643 -80204213 - Lx6 LINE L1 -27 7433 7308 2 902 415 266 141 62 chr11 41639702 41640043 -80203813 - RLTR9A LTR ERVK 0 368 1 2 902 411 389 68 26 chr11 41642030 41642339 -80201517 + MER2 DNA MER2_type 2 323 -22 2 902 740 288 50 19 chr11 41644248 41644570 -80199286 + L1MA6 LINE L1 5567 5898 -402 2 902 712 332 95 59 chr11 41644578 41645220 -80198636 + Tigger7 DNA MER2_type 1 443 -2048 2 902 21 0 0 0 chr11 41645320 41645341 -80198515 + AT_rich Low_complexity Low_complexity 1 21 0 2 902 537 306 7 0 chr11 41645425 41645569 -80198287 - B1_Mur1 SINE Alu 0 149 5 2 902 1007 113 0 0 chr11 41645722 41645864 -80197992 + B1_Mus2 SINE Alu 1 142 -5 2 902 3208 109 22 22 chr11 41646550 41647055 -80196801 + Lx3A LINE L1 6477 6981 0 2 902 180 111 0 0 chr11 41647058 41647085 -80196771 + (A)n Simple_repeat Simple_repeat 1 27 0 2 902 1093 88 0 26 chr11 41647780 41647931 -80195925 - B1_Mus1 SINE Alu 0 148 2 2 902 30 27 0 0 chr11 41647980 41648017 -80195839 + AT_rich Low_complexity Low_complexity 1 37 0 2 902 201 233 0 0 chr11 41648846 41648889 -80194967 + GA-rich Low_complexity Low_complexity 2 44 0 2 902 236 222 0 45 chr11 41649121 41649187 -80194669 + GA-rich Low_complexity Low_complexity 3 65 0 2 902 414 242 95 0 chr11 41649347 41649442 -80194414 + LTR33 LTR ERVL 412 515 0 2 902 622 244 185 21 chr11 41649983 41650226 -80193630 - ORR1D1 LTR MaLR -91 283 1 2 902 914 319 79 28 chr11 41650301 41650975 -80192881 - L1_Rod LINE L1 -302 5545 4838 2 902 340 299 100 60 chr11 41651072 41651321 -80192535 + Lx8 LINE L1 7194 7452 -21 2 902 26 30 0 0 chr11 41651350 41651383 -80192473 + AT_rich Low_complexity Low_complexity 1 33 0 2 902 758 306 130 3 chr11 41651530 41651845 -80192011 - MTE-int LTR MaLR -23 1557 1203 2 902 21 0 0 0 chr11 41652970 41652991 -80190865 + AT_rich Low_complexity Low_complexity 1 21 0 2 902 246 289 25 66 chr11 41653159 41653281 -80190575 - L1MC3 LINE L1 -30 7755 7639 2 902 551 284 97 86 chr11 41653685 41654035 -80189821 - RMER13A LTR ERVK -506 354 1 2 902 416 296 120 17 chr11 41654130 41654364 -80189492 - L1MC3 LINE L1 -275 7510 7253 2 902 20114 176 23 71 chr11 41654583 41658741 -80185115 - Lx LINE L1 0 6654 2832 2 902 255 31 0 0 chr11 41658741 41658773 -80185083 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 902 20114 167 19 66 chr11 41658773 41661231 -80182625 - Lx LINE L1 -3052 2831 377 2 902 241 326 61 0 chr11 41661279 41661426 -80182430 - L1MC LINE L1 -1907 4239 4084 2 902 522 91 0 0 chr11 41661540 41661617 -80182239 + (TA)n Simple_repeat Simple_repeat 2 78 0 2 902 447 287 20 0 chr11 41661719 41661820 -80182036 + URR1B DNA MER1_type 3 105 -120 2 902 315 276 0 65 chr11 41662240 41662333 -80181523 - B2_Mm2 SINE B2 -107 88 2 2 902 4009 196 80 65 chr11 41663065 41663954 -80179902 - RMER19B LTR ERVK 0 902 1 2 902 243 0 0 0 chr11 41664006 41664033 -80179823 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 902 1469 249 16 50 chr11 41664039 41664423 -80179433 - Lx6 LINE L1 -138 7322 6952 2 902 544 204 9 0 chr11 41664432 41664545 -80179311 + Lx3C LINE L1 5093 5206 -671 2 902 403 143 0 0 chr11 41664539 41664602 -80179254 + Lx3C LINE L1 5321 5383 -503 2 902 6665 193 19 11 chr11 41664612 41666065 -80177791 + Lx3C LINE L1 5504 6965 -11 2 902 396 0 0 0 chr11 41666066 41666110 -80177746 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2 902 2073 199 37 2 chr11 41666720 41667127 -80176729 + MTC LTR MaLR 1 421 0 2 902 527 0 16 0 chr11 41667624 41667687 -80176169 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 2 902 489 325 112 4 chr11 41668629 41668861 -80174995 - MTE-int LTR MaLR -1245 335 79 2 902 4150 156 17 33 chr11 41669345 41670162 -80173694 + RLTR22_Mur LTR ERVK 1 804 -1044 2 902 8219 112 36 30 chr11 41670195 41671489 -80172367 - Lx3_Mus LINE L1 -16 6993 5674 2 902 3494 82 25 0 chr11 41671489 41671966 -80171890 + L1_Mus1 LINE L1 6079 6567 0 2 902 8219 128 17 39 chr11 41671966 41672186 -80171670 - Lx3_Mus LINE L1 -210 5676 5473 2 902 1252 176 57 4 chr11 41672275 41672521 -80171335 + RLTR22_Mur LTR ERVK 1590 1848 0 2 902 302 336 31 39 chr11 41673020 41673147 -80170709 + B3A SINE B2 57 182 -16 2 902 2090 73 28 16 chr11 41673643 41673961 -80169895 - RLTRETN_Mm LTR ERVK 0 322 1 2 902 324 221 0 0 chr11 41674615 41674683 -80169173 - L1_Mur3 LINE L1 -2057 3823 3756 2 902 427 313 100 42 chr11 41674698 41674958 -80168898 - MER82 DNA MER2_type -302 351 77 2 902 185 0 40 0 chr11 41675936 41675961 -80167895 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 902 305 93 19 0 chr11 41676346 41676400 -80167456 + (TTG)n Simple_repeat Simple_repeat 3 57 0 2 902 1089 76 14 0 chr11 41676400 41676545 -80167311 - B1_Mus2 SINE Alu 0 147 1 2 902 391 307 76 35 chr11 41676796 41677113 -80166743 - L1MA9 LINE L1 -17 6295 5966 2 902 718 273 45 7 chr11 41677303 41677591 -80166265 - L1MA9 LINE L1 -592 5720 5422 2 902 232 304 85 38 chr11 41678074 41678180 -80165676 + PB1D7 SINE Alu 9 119 -1 2 902 213 65 0 0 chr11 41678910 41678941 -80164915 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 902 300 328 33 74 chr11 41679091 41679213 -80164643 + PB1D10 SINE Alu 1 117 0 2 902 471 298 0 0 chr11 41679276 41679400 -80164456 + B3A SINE B2 2 125 -73 2 903 200 260 40 40 chr11 41681397 41681473 -80162383 + MIRc SINE MIR 172 247 -21 2 903 27 0 0 0 chr11 41684269 41684296 -80159560 + AT_rich Low_complexity Low_complexity 1 27 0 2 903 207 0 0 0 chr11 41684658 41684681 -80159175 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 903 13951 167 111 5 chr11 41685433 41687238 -80156618 + L1_Mus3 LINE L1 2432 4437 -1449 2 903 1169 74 0 0 chr11 41687238 41687386 -80156470 + B1_Mus1 SINE Alu 1 148 0 2 903 13951 136 63 4 chr11 41687386 41689449 -80154407 + L1_Mus3 LINE L1 4438 6637 -1 2 903 306 0 0 0 chr11 41689803 41689837 -80154019 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 903 2651 35 11 73 chr11 41690062 41690431 -80153425 + L1Md_F3 LINE L1 6237 6582 -2 2 903 339 25 0 0 chr11 41691049 41691089 -80152767 + (T)n Simple_repeat Simple_repeat 1 40 0 2 903 36179 32 1 0 chr11 41691561 41698635 -80145221 - L1Md_T LINE L1 0 6585 1 2 903 2184 118 28 65 chr11 41698695 41699093 -80144763 + RLTR9A2 LTR ERVK 1 383 0 2 903 3951 285 38 7 chr11 41699153 41700496 -80143360 + ETnERV-int LTR ERVK 60 1512 -1802 2 903 3617 116 11 16 chr11 41700558 41701118 -80142738 + RLTR31B_Mm LTR ERVK 1 557 0 2 903 477 285 57 0 chr11 41701312 41701435 -80142421 - B1_Mur1 SINE Alu -19 130 1 2 903 385 120 67 0 chr11 41701571 41701646 -80142210 + Lx9 LINE L1 7397 7476 -168 2 903 438 20 0 0 chr11 41701646 41701697 -80142159 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 903 539 363 68 15 chr11 41702551 41702948 -80140908 + L1ME2 LINE L1 5528 5945 -219 2 903 5151 161 24 31 chr11 41703001 41704110 -80139746 + L1Md_F LINE L1 104 1205 -5411 2 903 34725 33 0 1 chr11 41704116 41708533 -80135323 + L1Md_F LINE L1 1170 5586 -297 2 903 8094 52 0 0 chr11 41708533 41709529 -80134327 + L1Md_T LINE L1 5587 6582 0 2 903 34725 32 0 1 chr11 41709529 41709540 -80134316 + L1Md_F LINE L1 5587 5596 -287 2 903 1129 299 102 40 chr11 41709880 41710623 -80133233 - Lx8 LINE L1 -5 7468 6680 2 903 189 0 0 0 chr11 41710775 41710796 -80133060 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2 903 353 187 115 9 chr11 41710825 41710938 -80132918 - Lx6 LINE L1 -13 7447 7323 2 903 295 342 63 42 chr11 41711015 41711253 -80132603 + L2 LINE L2 2667 2909 -510 2 903 237 411 73 30 chr11 41711619 41711852 -80132004 - LTR16C LTR ERVL -2 487 245 2 903 187 103 0 49 chr11 41712316 41712357 -80131499 + GA-rich Low_complexity Low_complexity 3 41 0 2 903 1274 59 0 6 chr11 41712609 41712780 -80131076 - L1_Mus2 LINE L1 0 6566 6397 2 903 22 0 0 0 chr11 41713554 41713576 -80130280 + AT_rich Low_complexity Low_complexity 1 22 0 2 903 683 188 60 0 chr11 41713808 41713941 -80129915 + B1_Mus1 SINE Alu 1 141 -7 2 903 239 125 0 51 chr11 41713948 41714007 -80129849 + A-rich Low_complexity Low_complexity 1 56 0 2 903 1959 214 51 0 chr11 41714166 41714558 -80129298 + MTC LTR MaLR 3 414 -7 2 903 553 214 9 0 chr11 41714691 41714803 -80129053 - L1_Mur3 LINE L1 -275 5605 5493 2 903 245 29 29 0 chr11 41714803 41714837 -80129019 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 903 2632 197 28 19 chr11 41715870 41716439 -80127417 - Lx5 LINE L1 0 7050 6477 2 903 269 103 14 42 chr11 41717569 41717640 -80126216 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 903 779 211 65 24 chr11 41717642 41717812 -80126044 - B3 SINE B2 -13 203 27 2 903 548 14 14 0 chr11 41717821 41717890 -80125966 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 2 903 2385 139 41 5 chr11 41717948 41718360 -80125496 - Lx4A LINE L1 -143 6915 6489 2 903 2581 157 16 2 chr11 41718352 41718799 -80125057 + Lx4A LINE L1 6018 6470 -588 2 903 1117 49 0 0 chr11 41718804 41718947 -80124909 - L1_Mus1 LINE L1 0 6567 6425 2 903 563 308 19 6 chr11 41719566 41719726 -80124130 - RSINE1 SINE B4 0 165 4 3 903 347 363 83 54 chr11 41719750 41719954 -80123902 + MLT1D LTR MaLR 1 210 -295 3 903 256 379 58 0 chr11 41721534 41721637 -80122219 + ID_B1 SINE B4 68 176 -48 3 903 321 369 0 0 chr11 41721547 41721658 -80122198 + PB1D10 SINE Alu 6 116 -1 3 903 238 252 0 57 chr11 41722844 41722919 -80120937 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 3 903 697 41 21 0 chr11 41722919 41723016 -80120840 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 3 903 238 252 0 57 chr11 41723016 41723062 -80120794 + (TCTCTG)n Simple_repeat Simple_repeat 4 49 0 3 903 201 94 0 0 chr11 41723067 41723099 -80120757 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 903 308 312 62 0 chr11 41724794 41724906 -80118950 - L2a LINE L2 -17 3409 3291 3 903 35 0 0 0 chr11 41725146 41725181 -80118675 + AT_rich Low_complexity Low_complexity 1 35 0 3 903 219 146 0 0 chr11 41727099 41727140 -80116716 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 3 903 25 0 0 0 chr11 41727171 41727196 -80116660 + AT_rich Low_complexity Low_complexity 1 25 0 3 903 204 260 10 59 chr11 41727536 41727638 -80116218 + A-rich Low_complexity Low_complexity 4 100 0 3 903 240 239 0 56 chr11 41728009 41728080 -80115776 + T-rich Low_complexity Low_complexity 4 70 0 3 903 420 222 0 0 chr11 41729199 41729307 -80114549 + (CA)n Simple_repeat Simple_repeat 2 109 0 3 903 29 28 0 0 chr11 41729404 41729440 -80114416 + AT_rich Low_complexity Low_complexity 1 36 0 3 903 202 311 80 13 chr11 41732040 41732115 -80111741 + MIR SINE MIR 58 137 -71 3 903 21 0 0 0 chr11 41732355 41732376 -80111480 + AT_rich Low_complexity Low_complexity 1 21 0 3 903 25 31 0 0 chr11 41733594 41733626 -80110230 + AT_rich Low_complexity Low_complexity 1 32 0 3 903 501 40 26 13 chr11 41733678 41733755 -80110101 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 3 903 240 227 0 49 chr11 41735406 41735508 -80108348 + (CAAA)n Simple_repeat Simple_repeat 3 99 0 3 903 2652 266 72 78 chr11 41736592 41736982 -80106874 + MYSERV16_I-int LTR ERVK 5 285 -2041 3 903 986 136 7 0 chr11 41736982 41737129 -80106727 - B1_Mus1 SINE Alu 0 148 1 3 903 2652 260 53 101 chr11 41737129 41738310 -80105546 + MYSERV16_I-int LTR ERVK 286 1403 -923 3 903 1135 206 31 56 chr11 41738299 41738623 -80105233 + MYSERV-int LTR ERVK 6234 6549 -1 3 903 1725 167 139 15 chr11 41738629 41739031 -80104825 + RLTR11B LTR ERVK 2 453 0 3 903 340 254 167 0 chr11 41740266 41740380 -80103476 + HAL1-3A_ME LINE L1 1981 2113 -745 3 903 3268 205 144 117 chr11 41740426 41741926 -80101930 + MYSERV16_I-int LTR ERVK 245 1784 -542 3 903 420 20 0 0 chr11 41743103 41743152 -80100704 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 903 278 288 193 5 chr11 41743381 41743573 -80100283 - LTR16A1 LTR ERVL -9 447 220 3 903 231 332 97 0 chr11 41743750 41743886 -80099970 + MIRb SINE MIR 31 179 -97 3 903 213 65 0 0 chr11 41744204 41744235 -80099621 + (A)n Simple_repeat Simple_repeat 1 31 0 3 903 25 0 0 0 chr11 41745550 41745575 -80098281 + AT_rich Low_complexity Low_complexity 1 25 0 3 903 496 220 34 0 chr11 41746916 41747034 -80096822 + Lx9 LINE L1 7352 7473 -171 3 903 498 172 0 0 chr11 41747035 41747134 -80096722 + (CACG)n Simple_repeat Simple_repeat 1 99 0 3 903 437 238 20 0 chr11 41747134 41747281 -80096575 + Lx9 LINE L1 7495 7644 0 3 903 21 0 0 0 chr11 41747677 41747698 -80096158 + AT_rich Low_complexity Low_complexity 1 21 0 3 903 24 67 0 0 chr11 41749031 41749076 -80094780 + AT_rich Low_complexity Low_complexity 1 45 0 3 903 420 111 0 0 chr11 41749848 41749920 -80093936 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 903 765 184 7 41 chr11 41750150 41750297 -80093559 + B1_Mur3 SINE Alu 1 142 -7 3 903 298 336 18 45 chr11 41750392 41750504 -80093352 + PB1D10 SINE Alu 1 109 -8 3 903 4039 98 4 2 chr11 41750627 41751188 -80092668 + L1_Mus3 LINE L1 6074 6635 -3 3 903 432 67 0 0 chr11 41752038 41752098 -80091758 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 903 24 53 0 0 chr11 41753111 41753149 -80090707 + AT_rich Low_complexity Low_complexity 1 38 0 3 903 1765 37 0 0 chr11 41753846 41754062 -80089794 + L1Md_A LINE L1 6366 6581 -1 3 903 180 0 0 0 chr11 41754384 41754404 -80089452 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 903 536 131 41 8 chr11 41754670 41754722 -80089134 + polypyrimidine Low_complexity Low_complexity 77 130 0 3 903 1268 67 0 27 chr11 41754722 41754907 -80088949 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 903 536 131 41 8 chr11 41754907 41754977 -80088879 + polypyrimidine Low_complexity Low_complexity 4 76 0 3 903 322 261 9 9 chr11 41755405 41755521 -80088335 - L1M5 LINE L1 -700 5479 5364 3 903 236 333 12 12 chr11 41755528 41755610 -80088246 - ID4 SINE ID 0 83 2 3 903 505 212 41 0 chr11 41755982 41756128 -80087728 - Lx9 LINE L1 -1 7643 7492 3 903 573 15 0 0 chr11 41756133 41756199 -80087657 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 903 411 21 0 0 chr11 41756199 41756246 -80087610 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 903 649 203 300 24 chr11 41756266 41756473 -80087383 + Lx9 LINE L1 6701 6964 -680 3 903 427 346 23 46 chr11 41756513 41756731 -80087125 - B3 SINE B2 -1 215 3 3 903 463 314 92 56 chr11 41756764 41757101 -80086755 - L1MEc LINE L1 -4965 1435 1087 3 903 925 135 0 27 chr11 41757648 41757831 -80086025 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 3 903 25 0 0 0 chr11 41759569 41759594 -80084262 + AT_rich Low_complexity Low_complexity 1 25 0 3 903 5596 83 9 1 chr11 41761017 41761797 -80082059 - L1_Mus3 LINE L1 -6 6632 5847 3 903 1390 81 0 0 chr11 41761797 41761982 -80081874 - L1_Mm LINE L1 -692 5191 5007 3 903 1107 300 81 16 chr11 41762116 41762499 -80081357 + MTD LTR MaLR 10 417 -2 3 903 405 0 0 0 chr11 41762914 41762959 -80080897 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 903 747 0 0 0 chr11 41762959 41763042 -80080814 + (GAA)n Simple_repeat Simple_repeat 3 85 0 3 903 678 75 0 0 chr11 41763042 41763135 -80080721 + (GGAA)n Simple_repeat Simple_repeat 1 93 0 3 903 5951 138 15 11 chr11 41763277 41764297 -80079559 - Lx2 LINE L1 -3 6994 5971 3 903 463 306 48 20 chr11 41765510 41765657 -80078199 + B3A SINE B2 1 151 -47 3 903 624 249 45 99 chr11 41765691 41765914 -80077942 + B3 SINE B2 6 216 0 3 903 432 77 0 0 chr11 41766750 41766815 -80077041 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 3 903 252 278 43 22 chr11 41768698 41768790 -80075066 + MTE2b LTR MaLR 278 371 -8 3 903 198 0 0 0 chr11 41768904 41768926 -80074930 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 903 502 379 7 0 chr11 41768927 41769067 -80074789 - RSINE1 SINE B4 -24 141 1 3 903 743 333 24 40 chr11 41769193 41769251 -80074605 + B4 SINE B4 40 92 -200 3 903 1421 164 45 131 chr11 41769251 41769437 -80074419 + RMER17C LTR ERVK 1 183 -227 3 903 1072 119 6 6 chr11 41769437 41769615 -80074241 + (TTC)n Simple_repeat Simple_repeat 2 179 0 3 903 1421 164 45 131 chr11 41769615 41769877 -80073979 + RMER17C LTR ERVK 184 409 -1 3 903 743 333 24 40 chr11 41769877 41770071 -80073785 + B4 SINE B4 93 287 -5 3 903 357 62 0 0 chr11 41770123 41770171 -80073685 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 903 273 274 108 29 chr11 41771270 41771409 -80072447 + L1MD LINE L1 3957 4106 -2040 3 903 23 54 0 0 chr11 41771457 41771494 -80072362 + AT_rich Low_complexity Low_complexity 1 37 0 3 903 3585 147 12 2 chr11 41771725 41772306 -80071550 - Lx2B LINE L1 -10 6990 6404 3 903 1323 94 25 0 chr11 41772306 41772509 -80071347 + MusHAL1 LINE L1 1947 2154 -558 3 903 252 0 0 0 chr11 41773057 41773085 -80070771 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 903 27 49 0 0 chr11 41773477 41773518 -80070338 + AT_rich Low_complexity Low_complexity 1 41 0 3 903 330 80 0 0 chr11 41773885 41773935 -80069921 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 903 512 266 69 80 chr11 41774275 41774463 -80069393 - MTE2b LTR MaLR -13 366 181 3 903 576 0 0 0 chr11 41774811 41774875 -80068981 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 903 274 286 0 87 chr11 41775223 41775315 -80068541 - B4A SINE B4 -198 94 11 3 903 423 0 0 0 chr11 41775717 41775764 -80068092 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 903 414 0 0 0 chr11 41776747 41776793 -80067063 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 903 240 122 0 0 chr11 41776855 41776896 -80066960 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 903 2494 176 24 4 chr11 41778563 41779020 -80064836 - RMER4A LTR ERVK 0 466 1 3 903 1393 227 77 20 chr11 41779101 41779341 -80064515 - ORR1D1 LTR MaLR -4 370 110 3 903 1356 243 65 22 chr11 41779341 41779741 -80064115 - MTC LTR MaLR -4 417 1 3 903 1393 227 77 20 chr11 41779741 41779850 -80064006 - ORR1D1 LTR MaLR -265 109 1 3 903 306 0 0 0 chr11 41779992 41780026 -80063830 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 903 21 36 0 0 chr11 41780046 41780074 -80063782 + AT_rich Low_complexity Low_complexity 1 28 0 3 903 281 188 67 86 chr11 41782639 41782744 -80061112 + MamRep434 DNA TcMar 111 213 -213 3 903 612 0 0 0 chr11 41782882 41782950 -80060906 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 903 26 30 0 0 chr11 41785454 41785487 -80058369 + AT_rich Low_complexity Low_complexity 1 33 0 3 903 230 159 0 0 chr11 41786477 41786521 -80057335 + T-rich Low_complexity Low_complexity 6 49 0 3 903 227 263 79 20 chr11 41787062 41787163 -80056693 - Lx2B LINE L1 -10 6990 6884 3 903 1214 214 34 0 chr11 41787153 41787419 -80056437 + Lx4B LINE L1 6095 6369 -689 3 903 246 200 14 14 chr11 41787941 41788012 -80055844 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 3 903 226 338 133 15 chr11 41789205 41789340 -80054516 + MLT1H LTR MaLR 82 232 -317 3 903 313 109 0 21 chr11 41789668 41789715 -80054141 - HAL1-3A_ME LINE L1 -838 2020 1975 3 903 717 182 21 14 chr11 41789748 41789893 -80053963 - B1_Mur4 SINE Alu 0 150 5 4 903 33 0 0 0 chr11 41791339 41791372 -80052484 + AT_rich Low_complexity Low_complexity 1 33 0 4 903 1797 304 80 58 chr11 41791522 41792433 -80051423 + Lx8 LINE L1 6540 7470 -3 4 903 532 168 47 0 chr11 41792525 41792632 -80051224 + RLTR11A LTR ERVK 417 528 0 4 903 1428 60 10 0 chr11 41794663 41794862 -80048994 + L1_Mus3 LINE L1 6432 6632 -6 4 903 28 0 0 0 chr11 41794869 41794897 -80048959 + AT_rich Low_complexity Low_complexity 1 28 0 4 903 245 29 29 0 chr11 41795065 41795099 -80048757 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 4 903 955 105 0 0 chr11 41795099 41795232 -80048624 - B1_Mus2 SINE Alu -13 134 2 4 903 1138 186 18 5 chr11 41796050 41796272 -80047584 - URR1B DNA MER1_type 0 225 1 4 903 23 0 0 0 chr11 41797038 41797061 -80046795 + AT_rich Low_complexity Low_complexity 1 23 0 4 903 454 363 14 7 chr11 41797232 41797379 -80046477 + B1F SINE Alu 2 149 0 4 903 305 308 86 107 chr11 41797983 41798357 -80045499 + L1ME3B LINE L1 5570 5935 -305 4 903 228 360 77 52 chr11 41798803 41799090 -80044766 + MER113 DNA MER1_type 65 358 -163 4 903 491 293 34 6 chr11 41799173 41799348 -80044508 + B3A SINE B2 2 181 -17 4 903 967 124 93 6 chr11 41799899 41800061 -80043795 + B2_Mm2 SINE B2 2 177 -18 4 903 23 0 0 0 chr11 41800819 41800842 -80043014 + AT_rich Low_complexity Low_complexity 1 23 0 4 903 427 338 122 13 chr11 41800944 41801021 -80042835 - RMER5 LTR ERV1 -154 380 291 4 903 1038 49 28 0 chr11 41801021 41801163 -80042693 + B1_Mus1 SINE Alu 1 146 -2 4 903 687 25 0 0 chr11 41801163 41801244 -80042612 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 903 427 338 122 13 chr11 41801244 41801468 -80042388 - RMER5 LTR ERV1 -244 290 46 4 903 204 40 0 0 chr11 41802041 41802066 -80041790 + (T)n Simple_repeat Simple_repeat 1 25 0 4 903 24 32 0 0 chr11 41802210 41802241 -80041615 + AT_rich Low_complexity Low_complexity 1 31 0 4 903 552 15 0 0 chr11 41802465 41802530 -80041326 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 903 188 309 101 47 chr11 41802914 41803043 -80040813 + L2c LINE L2 3232 3367 -20 4 903 320 267 37 56 chr11 41803866 41803973 -80039883 + MLT1A LTR MaLR 270 374 0 4 903 215 400 11 0 chr11 41804681 41804776 -80039080 - L2 LINE L2 -624 2795 2700 4 903 39 38 0 0 chr11 41805718 41805771 -80038085 + AT_rich Low_complexity Low_complexity 1 53 0 4 903 22 0 0 0 chr11 41805842 41805864 -80037992 + AT_rich Low_complexity Low_complexity 1 22 0 4 903 224 222 30 45 chr11 41806372 41806504 -80037352 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 4 903 718 221 0 26 chr11 41807144 41807297 -80036559 - B1_Mur2 SINE Alu 0 149 1 4 903 400 203 29 36 chr11 41810324 41810462 -80033394 + Lx9 LINE L1 7500 7636 -8 4 903 240 345 35 35 chr11 41811059 41811173 -80032683 + MER5A DNA MER1_type 48 161 -28 4 904 243 0 0 0 chr11 41812246 41812273 -80031583 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 4 904 192 77 0 0 chr11 41812444 41812470 -80031386 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 904 224 100 0 24 chr11 41814215 41814256 -80029600 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 4 904 21 0 0 0 chr11 41816226 41816247 -80027609 + AT_rich Low_complexity Low_complexity 1 21 0 4 904 24 32 0 0 chr11 41816354 41816385 -80027471 + AT_rich Low_complexity Low_complexity 1 31 0 4 904 536 121 11 0 chr11 41816862 41816953 -80026903 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 904 435 78 0 0 chr11 41816953 41817017 -80026839 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 904 23 54 0 0 chr11 41817017 41817054 -80026802 + AT_rich Low_complexity Low_complexity 1 37 0 4 904 26 0 0 0 chr11 41817239 41817265 -80026591 + AT_rich Low_complexity Low_complexity 1 26 0 4 904 317 311 66 99 chr11 41817811 41818236 -80025620 + L1MEb LINE L1 592 1002 -5134 4 904 307 320 45 0 chr11 41818360 41818516 -80025340 + L1MEb LINE L1 1150 1312 -4930 4 904 195 125 0 0 chr11 41819112 41819152 -80024704 + (A)n Simple_repeat Simple_repeat 1 40 0 4 904 644 225 86 12 chr11 41819469 41819631 -80024225 + ORR1C2 LTR MaLR 209 382 -2 4 904 549 42 0 0 chr11 41819758 41819830 -80024026 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 904 1142 68 0 0 chr11 41819934 41820080 -80023776 + B1_Mm SINE Alu 2 147 0 4 904 5217 155 8 9 chr11 41820167 41821063 -80022793 + Lx3C LINE L1 6082 6976 0 4 904 349 302 157 10 chr11 41821083 41821287 -80022569 + L1MEb LINE L1 2829 3062 -3084 4 904 711 224 7 13 chr11 41821741 41821890 -80021966 + B1_Mur4 SINE Alu 3 150 0 4 904 24 0 0 0 chr11 41821890 41821914 -80021942 + AT_rich Low_complexity Low_complexity 1 24 0 4 904 224 344 0 16 chr11 41821932 41821994 -80021862 - ID2 SINE ID -18 65 5 4 904 34 24 0 0 chr11 41821994 41822035 -80021821 + AT_rich Low_complexity Low_complexity 1 41 0 4 904 2157 179 33 40 chr11 41822081 41822505 -80021351 + MTC LTR MaLR 1 421 0 4 904 260 289 94 19 chr11 41822907 41823013 -80020843 - B3 SINE B2 -102 114 1 4 904 814 320 114 10 chr11 41823013 41823303 -80020553 - MTEa LTR MaLR -59 320 1 4 904 411 73 0 0 chr11 41824622 41824677 -80019179 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 904 567 0 0 0 chr11 41824952 41825015 -80018841 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 4 904 225 163 0 0 chr11 41825035 41825084 -80018772 + CT-rich Low_complexity Low_complexity 1 49 0 4 904 28 29 0 0 chr11 41825173 41825208 -80018648 + AT_rich Low_complexity Low_complexity 1 35 0 4 904 24 32 0 0 chr11 41825290 41825321 -80018535 + AT_rich Low_complexity Low_complexity 1 31 0 4 904 3254 64 0 2 chr11 41825375 41825798 -80018058 - L1_Mus1 LINE L1 -1 6566 6145 4 904 1398 83 5 5 chr11 41825871 41826064 -80017792 - B2_Mm1t SINE B2 0 193 1 4 904 396 308 141 39 chr11 41826507 41826791 -80017065 + ERVL-B4-int LTR ERVL 2622 2934 -2780 4 904 839 285 21 13 chr11 41827060 41827298 -80016558 + MLT-int LTR MaLR 1496 1735 0 4 904 444 312 81 36 chr11 41827404 41827627 -80016229 - Lx8 LINE L1 -377 7096 6864 4 904 183 377 19 58 chr11 41828091 41828246 -80015610 - MIRc SINE MIR -114 154 6 4 904 21 0 0 0 chr11 41828859 41828880 -80014976 + AT_rich Low_complexity Low_complexity 1 21 0 4 904 356 298 17 25 chr11 41829042 41829227 -80014629 + L1M5 LINE L1 5319 5496 -698 4 904 1808 137 52 24 chr11 41829627 41829957 -80013899 - Lx2 LINE L1 -5 6649 6311 4 904 306 93 0 0 chr11 41829957 41830000 -80013856 - Lx LINE L1 -695 5959 5917 4 904 3699 143 20 2 chr11 41830005 41830821 -80013035 - Lx2 LINE L1 -902 6095 5264 4 904 9015 162 14 63 chr11 41830817 41832019 -80011837 + L1_Mur1 LINE L1 3456 4635 -1251 4 904 1111 68 0 0 chr11 41832019 41832166 -80011690 + B1_Mm SINE Alu 1 147 0 4 904 9015 162 14 63 chr11 41832166 41832888 -80010968 + L1_Mur1 LINE L1 4636 5285 -601 4 904 13153 30 4 0 chr11 41833511 41835087 -80008769 + L1Md_T LINE L1 4004 5585 -298 4 904 8449 33 0 0 chr11 41835088 41836084 -80007772 + L1Md_T LINE L1 5587 6582 0 4 904 9123 60 0 1 chr11 41836085 41837246 -80006610 + L1Md_F3 LINE L1 4427 5586 -297 4 904 8181 40 1 4 chr11 41837247 41838247 -80005609 + L1Md_F3 LINE L1 5588 6584 0 4 904 310 317 123 37 chr11 41839047 41839234 -80004622 - MLT1A1 LTR MaLR -205 203 1 4 904 306 0 0 0 chr11 41839556 41839590 -80004266 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 904 369 0 0 0 chr11 41840521 41840562 -80003294 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 904 571 118 11 0 chr11 41840569 41840662 -80003194 - B1_Mur3 SINE Alu -11 138 45 4 904 424 289 54 81 chr11 41840634 41840856 -80003000 + MLT1A0 LTR MaLR 150 365 0 4 904 1723 105 7 0 chr11 41842685 41842961 -80000895 + L1_Mur1 LINE L1 1285 1562 -4324 4 904 28188 142 35 3 chr11 41842960 41845502 -79998354 + L1_Mus2 LINE L1 535 3174 -2709 4 904 180 0 0 0 chr11 41845502 41845522 -79998334 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 904 28188 112 25 2 chr11 41845522 41848802 -79995054 + L1_Mus2 LINE L1 3175 6566 0 4 904 3821 104 22 3 chr11 41848783 41849372 -79994484 + Lx3_Mus LINE L1 1534 2133 -3753 4 904 17416 88 18 35 chr11 41849411 41850845 -79993011 + Lx3_Mus LINE L1 3241 4680 -1206 4 904 218 29 59 0 chr11 41850845 41850879 -79992977 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 4 904 17416 88 18 35 chr11 41850879 41850939 -79992917 + Lx3_Mus LINE L1 4681 4739 -1147 4 904 183 42 0 0 chr11 41850939 41850963 -79992893 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 904 17416 88 18 35 chr11 41850963 41851591 -79992265 + Lx3_Mus LINE L1 4740 5364 -522 4 904 984 83 6 70 chr11 41851591 41851747 -79992109 + B1_Mus2 SINE Alu 1 146 -1 4 904 17416 108 22 72 chr11 41851747 41853522 -79990334 + Lx3_Mus LINE L1 5365 6992 -17 4 904 1161 95 0 0 chr11 41853523 41853692 -79990164 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 4 904 477 0 0 0 chr11 41853921 41853974 -79989882 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 904 382 254 67 8 chr11 41854460 41854579 -79989277 - MTEb LTR MaLR -4 375 250 4 904 432 224 0 0 chr11 41854593 41854678 -79989178 - MTEb LTR MaLR -294 85 1 4 904 653 303 64 11 chr11 41855394 41855581 -79988275 - B3 SINE B2 -6 210 14 4 904 261 0 0 0 chr11 41856133 41856162 -79987694 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 904 306 0 0 0 chr11 41856557 41856591 -79987265 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 904 5604 84 29 1 chr11 41857120 41857914 -79985942 + RLTR22_Mus LTR ERVK 1 816 -992 4 904 324 165 274 17 chr11 41858383 41858500 -79985356 - Lx3C LINE L1 0 6976 6830 4 904 733 318 44 119 chr11 41858812 41858840 -79985016 - MTD LTR MaLR 0 419 392 4 904 207 0 0 0 chr11 41858840 41858863 -79984993 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 904 733 318 44 119 chr11 41858863 41859287 -79984569 - MTD LTR MaLR -28 391 1 4 904 24 32 0 0 chr11 41859768 41859799 -79984057 + AT_rich Low_complexity Low_complexity 1 31 0 4 904 3020 142 46 2 chr11 41859799 41860299 -79983557 - Lx3A LINE L1 -2 6979 6458 4 904 711 287 114 40 chr11 41860376 41861133 -79982723 - Lx7 LINE L1 -1203 6270 5472 4 904 264 243 168 21 chr11 41861377 41861520 -79982336 - Lx8 LINE L1 -2 7471 7308 4 904 228 43 21 42 chr11 41862199 41862247 -79981609 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 4 904 969 73 22 0 chr11 41862247 41862384 -79981472 - B1_Mus1 SINE Alu 0 148 9 4 904 514 362 20 0 chr11 41862399 41862551 -79981305 + RSINE1 SINE B4 3 157 -8 5 904 21 36 0 0 chr11 41862566 41862594 -79981262 + AT_rich Low_complexity Low_complexity 1 28 0 5 904 419 137 23 31 chr11 41862595 41862723 -79981133 + (TA)n Simple_repeat Simple_repeat 2 128 0 5 904 363 292 165 22 chr11 41864302 41864484 -79979372 - MLT1F1 LTR MaLR -11 558 351 5 904 298 306 118 39 chr11 41864644 41864797 -79979059 - MLT1F1 LTR MaLR -332 180 16 5 904 190 299 13 107 chr11 41866325 41866475 -79977381 + MIR SINE MIR 126 261 -1 5 904 327 381 0 0 chr11 41867336 41867441 -79976415 + PB1D9 SINE Alu 6 110 -10 5 904 308 226 0 28 chr11 41867484 41867593 -79976263 + GA-rich Low_complexity Low_complexity 5 110 0 5 904 584 330 66 9 chr11 41867636 41867847 -79976009 + ID_B1 SINE B4 2 224 0 5 904 234 0 0 0 chr11 41867885 41867911 -79975945 + (A)n Simple_repeat Simple_repeat 1 26 0 5 904 1162 196 14 9 chr11 41868807 41869029 -79974827 - URR1B DNA MER1_type 0 225 3 5 904 962 304 51 11 chr11 41869884 41870157 -79973699 + B4A SINE B4 9 292 0 5 904 336 24 0 0 chr11 41870170 41870211 -79973645 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 904 876 44 0 0 chr11 41870211 41870323 -79973533 + (GA)n Simple_repeat Simple_repeat 2 114 0 5 904 3844 146 14 1 chr11 41870713 41871379 -79972477 - L1_Mur2 LINE L1 -1146 4731 4058 5 904 452 338 89 62 chr11 41871913 41872238 -79971618 + RLTR18 LTR ERVK 283 616 0 5 904 552 336 52 29 chr11 41872326 41872451 -79971405 + L1M2 LINE L1 4886 5010 -1133 5 904 1050 57 13 6 chr11 41872451 41872610 -79971246 + L1_Mus3 LINE L1 6479 6638 0 5 904 552 297 74 52 chr11 41872610 41873022 -79970834 + L1M2 LINE L1 4980 5400 -480 5 904 8283 46 0 0 chr11 41873156 41874653 -79969203 - L1Md_F2 LINE L1 -12 6570 5074 5 904 21 0 0 0 chr11 41875401 41875422 -79968434 + AT_rich Low_complexity Low_complexity 1 21 0 5 904 1676 219 96 8 chr11 41876646 41877033 -79966823 - Lx5 LINE L1 0 7050 6630 5 904 210 191 0 0 chr11 41877181 41877228 -79966628 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 904 887 247 257 3 chr11 41878080 41878376 -79965480 + Lx6 LINE L1 6910 7280 -180 5 904 302 240 8 0 chr11 41878535 41878664 -79965192 + (CATATA)n Simple_repeat Simple_repeat 3 132 0 5 904 35 54 0 0 chr11 41879187 41879243 -79964613 + AT_rich Low_complexity Low_complexity 1 56 0 5 904 207 0 0 0 chr11 41881758 41881781 -79962075 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 904 27992 103 42 10 chr11 41882559 41886956 -79956900 - L1_Mus2 LINE L1 0 6566 1989 5 904 5070 45 2 0 chr11 41886956 41887571 -79956285 - L1Md_F2 LINE L1 0 6582 5967 5 904 27992 138 33 9 chr11 41887570 41888848 -79955008 - L1_Mus2 LINE L1 -1924 1990 708 5 904 247 273 243 17 chr11 41888848 41889083 -79954773 - L1_Mus2 LINE L1 -5824 792 505 5 904 685 263 27 105 chr11 41889137 41889438 -79954418 - L1VL1 LINE L1 -6016 406 1 5 904 24 0 0 0 chr11 41889620 41889644 -79954212 + AT_rich Low_complexity Low_complexity 1 24 0 5 904 24 53 0 0 chr11 41889921 41889959 -79953897 + AT_rich Low_complexity Low_complexity 1 38 0 5 904 189 233 23 0 chr11 41890229 41890272 -79953584 + MIRm SINE MIR 231 274 -2 5 904 235 261 10 52 chr11 41891164 41891261 -79952595 + L2c LINE L2 3181 3273 -114 5 904 245 167 19 0 chr11 41891462 41891516 -79952340 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 5 904 187 111 0 0 chr11 41891980 41892007 -79951849 + L3 LINE CR1 3341 3367 -1122 5 904 496 101 22 0 chr11 41892741 41892830 -79951026 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 904 245 210 24 24 chr11 41894923 41895006 -79948850 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 904 364 136 34 0 chr11 41895007 41895066 -79948790 - HAL1-3A_ME LINE L1 -840 2018 1958 5 904 201 167 0 0 chr11 41895103 41895139 -79948717 + T-rich Low_complexity Low_complexity 6 41 0 5 904 6152 112 7 8 chr11 41896061 41897011 -79946845 - Lx3A LINE L1 -4 6977 6029 5 904 2145 164 57 60 chr11 41897157 41897610 -79946246 - RMER4A LTR ERVK 0 466 15 5 904 4156 99 0 157 chr11 41897610 41898427 -79945429 - L1_Mur1 LINE L1 -321 5565 4877 5 904 189 74 0 0 chr11 41898820 41898847 -79945009 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 904 310 335 88 104 chr11 41898864 41899161 -79944695 - B4A SINE B4 0 292 1 5 904 222 37 0 0 chr11 41899210 41899237 -79944619 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 904 21 71 0 0 chr11 41900334 41900376 -79943480 + AT_rich Low_complexity Low_complexity 1 42 0 5 904 255 305 39 78 chr11 41900653 41900781 -79943075 - MIRc SINE MIR -108 160 38 5 904 283 341 87 0 chr11 41901009 41901182 -79942674 - B3A SINE B2 -6 192 5 5 904 237 132 0 0 chr11 41901330 41901368 -79942488 + (T)n Simple_repeat Simple_repeat 1 38 0 5 904 31748 85 6 16 chr11 41901472 41906469 -79937387 + L1Md_F2 LINE L1 647 5585 -298 5 904 7471 66 12 19 chr11 41906470 41907471 -79936385 + L1Md_F2 LINE L1 5587 6580 -2 5 904 852 198 113 0 chr11 41908125 41908302 -79935554 + URR1A DNA MER1_type 1 197 -29 5 904 535 234 6 13 chr11 41908367 41908523 -79935333 + CT-rich Low_complexity Low_complexity 2 156 0 5 904 271 324 106 19 chr11 41908587 41908691 -79935165 + PB1D7 SINE Alu 7 119 -1 5 904 189 0 0 0 chr11 41908946 41908967 -79934889 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 5 904 297 75 0 0 chr11 41909091 41909131 -79934725 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 904 418 298 78 69 chr11 41909339 41909570 -79934286 + RMER2 LTR ERV1 335 567 0 5 904 22 56 0 0 chr11 41911763 41911799 -79932057 + AT_rich Low_complexity Low_complexity 1 36 0 5 904 24 21 0 60 chr11 41912089 41912139 -79931717 + AT_rich Low_complexity Low_complexity 1 47 0 5 904 301 266 164 20 chr11 41912460 41912606 -79931250 - L1MC LINE L1 -799 5545 5379 5 904 545 291 40 18 chr11 41914158 41914353 -79929503 + Lx7 LINE L1 7139 7336 -360 5 904 297 0 0 0 chr11 41914353 41914386 -79929470 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 904 545 291 40 18 chr11 41914386 41914414 -79929442 + Lx7 LINE L1 7337 7366 -330 5 904 21 71 0 0 chr11 41914495 41914537 -79929319 + AT_rich Low_complexity Low_complexity 1 42 0 5 904 2707 106 5 2 chr11 41915833 41916229 -79927627 - L1_Mus4 LINE L1 -10 6626 6230 5 904 4491 133 82 53 chr11 41916598 41917479 -79926377 + RMER17A2 LTR ERVK 1 906 0 5 904 201 202 23 35 chr11 41918091 41918178 -79925678 + (TTA)n Simple_repeat Simple_repeat 2 87 0 5 904 245 284 12 0 chr11 41918189 41918270 -79925586 - Lx7 LINE L1 -60 7636 7555 5 904 22 56 0 0 chr11 41918517 41918553 -79925303 + AT_rich Low_complexity Low_complexity 1 36 0 5 904 205 272 43 0 chr11 41918563 41918655 -79925201 + A-rich Low_complexity Low_complexity 5 100 0 5 904 1080 246 39 35 chr11 41918656 41918968 -79924888 - Lx7 LINE L1 -329 7367 7055 5 904 2907 227 42 10 chr11 41919007 41920064 -79923792 - Lx7 LINE L1 -1481 6215 5120 5 904 4025 276 64 33 chr11 41921658 41921826 -79922030 - Lx6 LINE L1 -9 7451 7278 5 904 399 73 0 0 chr11 41921826 41921881 -79921975 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 904 4025 276 64 33 chr11 41921881 41922980 -79920876 - Lx6 LINE L1 -183 7277 6145 5 904 475 202 21 0 chr11 41922982 41923076 -79920780 - RLTR25B LTR ERVK 0 1103 1008 5 904 333 0 0 0 chr11 41923076 41923113 -79920743 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 904 3119 189 107 39 chr11 41923113 41923867 -79919989 - RLTR25B LTR ERVK -220 808 3 5 904 7109 195 28 32 chr11 41923879 41925366 -79918490 - Lx6 LINE L1 -1309 6151 4677 5 904 3734 99 106 2 chr11 41925366 41925912 -79917944 - RLTR1D LTR ERV1 0 605 3 5 904 7109 180 28 30 chr11 41925912 41926212 -79917644 - Lx6 LINE L1 -1204 4676 4370 5 904 252 0 0 0 chr11 41926226 41926254 -79917602 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 904 193 356 17 17 chr11 41927735 41927795 -79916061 + L2b LINE L2 3142 3201 -174 5 904 309 241 108 27 chr11 41927886 41927997 -79915859 - RLTR23 LTR ERV1 0 430 311 5 904 2424 98 14 6 chr11 41928465 41928826 -79915030 - L1_Mus3 LINE L1 -7 6631 6268 5 904 348 250 20 10 chr11 41928902 41929003 -79914853 - Lx9 LINE L1 -232 7412 7311 5 904 300 102 0 0 chr11 41929044 41929093 -79914763 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 904 21 0 0 0 chr11 41929160 41929181 -79914675 + AT_rich Low_complexity Low_complexity 1 21 0 5 904 234 209 45 42 chr11 41929860 41929931 -79913925 + Lx6 LINE L1 5846 5935 -365 5 904 791 203 0 20 chr11 41929942 41930088 -79913768 - URR1B DNA MER1_type -81 144 2 5 904 252 0 0 0 chr11 41930275 41930303 -79913553 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 904 27 49 0 0 chr11 41930373 41930414 -79913442 + AT_rich Low_complexity Low_complexity 1 41 0 5 904 582 109 0 0 chr11 41931025 41931117 -79912739 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 904 585 61 0 0 chr11 41931119 41931201 -79912655 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 904 281 274 115 19 chr11 41932393 41932549 -79911307 - Charlie1a DNA MER1_type -6 1449 1279 5 904 369 314 88 9 chr11 41932662 41932833 -79911023 + B3A SINE B2 3 186 -30 5 904 599 318 58 64 chr11 41932828 41933295 -79910561 - Charlie1a DNA MER1_type -210 1245 782 5 904 650 338 87 3 chr11 41933297 41933653 -79910203 - Charlie1a DNA MER1_type -827 628 243 5 904 669 355 80 18 chr11 41934197 41934523 -79909333 - Lx8 LINE L1 -928 6545 6195 5 904 468 35 0 0 chr11 41934523 41934581 -79909275 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 904 405 0 0 0 chr11 41934581 41934625 -79909231 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 904 669 355 80 18 chr11 41934625 41934698 -79909158 - Lx8 LINE L1 -1279 6194 6121 5 904 2793 37 6 17 chr11 41934810 41935167 -79908689 - L1Md_F2 LINE L1 0 6582 6230 5 904 844 31 0 0 chr11 41935167 41935265 -79908591 + L1Md_F2 LINE L1 6146 6243 -339 5 904 1250 188 125 59 chr11 41935696 41935985 -79907871 - MT2B2 LTR ERVL -1 583 276 5 904 1170 174 122 21 chr11 41935980 41936122 -79907734 - RLTR22_Mur LTR ERVK -1532 316 173 5 904 447 19 0 0 chr11 41936122 41936174 -79907682 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 904 1170 174 122 21 chr11 41936174 41936318 -79907538 - RLTR22_Mur LTR ERVK -1676 172 2 5 904 970 197 60 11 chr11 41936319 41936504 -79907352 - MERVL_2A-int LTR ERVL -4115 1646 1453 5 904 396 103 0 0 chr11 41936528 41936586 -79907270 - MERVL_2A-int LTR ERVL -5699 62 5 5 904 1683 167 18 58 chr11 41936590 41936933 -79906923 - ORR1A4 LTR MaLR 0 329 1 5 904 212 100 25 0 chr11 41937823 41937863 -79905993 + (CATA)n Simple_repeat Simple_repeat 3 43 0 5 904 33 25 0 0 chr11 41938100 41938140 -79905716 + AT_rich Low_complexity Low_complexity 1 40 0 5 904 525 321 21 0 chr11 41938174 41938314 -79905542 - RSINE1 SINE B4 -12 153 11 5 904 864 111 0 0 chr11 41938434 41938587 -79905269 + (GA)n Simple_repeat Simple_repeat 1 153 0 5 904 952 155 171 0 chr11 41938704 41938897 -79904959 - URR1A DNA MER1_type 0 226 1 6 904 31 0 0 0 chr11 41940822 41940853 -79903003 + AT_rich Low_complexity Low_complexity 1 31 0 6 904 342 202 48 0 chr11 41941439 41941523 -79902333 - L1MB5 LINE L1 -239 5935 5848 6 904 425 339 109 53 chr11 41941625 41942021 -79901835 - L1MB5 LINE L1 -398 5775 5358 6 904 345 299 92 54 chr11 41942035 41942329 -79901527 - L1MB5 LINE L1 -826 5320 5016 6 904 782 209 35 10 chr11 41942643 41942846 -79901010 + Lx9 LINE L1 7428 7635 -9 6 1 513 261 100 74 chr11 41942862 41943075 -79900781 - L1MA8 LINE L1 -242 6070 5851 6 905 1001 121 0 0 chr11 41943075 41943215 -79900641 + B1_Mus2 SINE Alu 1 140 -7 6 905 600 14 0 0 chr11 41943215 41943284 -79900572 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 6 905 513 263 90 53 chr11 41943284 41943349 -79900507 - L1MA8 LINE L1 -441 5850 5784 6 905 321 89 0 0 chr11 41944004 41944049 -79899807 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 6 905 22 56 0 0 chr11 41945973 41946009 -79897847 + AT_rich Low_complexity Low_complexity 1 36 0 6 905 273 295 54 0 chr11 41947913 41948025 -79895831 + MER33 DNA MER1_type 22 139 -185 6 905 225 132 0 0 chr11 41948137 41948175 -79895681 + (TTA)n Simple_repeat Simple_repeat 3 40 0 6 905 530 280 0 17 chr11 41948177 41948297 -79895559 - PB1D9 SINE Alu -2 118 1 6 905 183 205 0 0 chr11 41951179 41951218 -79892638 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 6 905 22 35 0 0 chr11 41951388 41951417 -79892439 + AT_rich Low_complexity Low_complexity 1 29 0 6 905 25 0 0 0 chr11 41953514 41953539 -79890317 + AT_rich Low_complexity Low_complexity 1 25 0 6 905 326 329 124 64 chr11 41954290 41954556 -79889300 + MLT2B5 LTR ERVL 72 353 -248 6 905 181 355 26 35 chr11 41955586 41955700 -79888156 + MIRc SINE MIR 50 162 -106 6 905 653 66 11 0 chr11 41957649 41957740 -79886116 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 6 905 232 299 19 102 chr11 41958590 41958698 -79885158 - L2c LINE L2 -2 3385 3287 6 905 190 333 86 17 chr11 41958697 41958813 -79885043 + L2c LINE L2 3224 3347 -40 6 905 189 0 0 0 chr11 41959452 41959473 -79884383 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 905 291 93 0 0 chr11 41959961 41960004 -79883852 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 905 707 30 10 0 chr11 41960303 41960402 -79883454 - L1Md_T LINE L1 0 6582 6483 6 905 283 253 12 12 chr11 41961620 41961704 -79882152 + GA-rich Low_complexity Low_complexity 4 87 0 6 905 440 230 24 84 chr11 41961898 41962128 -79881728 + ORSL DNA Tip100 1 268 -7 6 905 21 36 0 0 chr11 41962194 41962222 -79881634 + AT_rich Low_complexity Low_complexity 1 28 0 6 905 432 0 0 0 chr11 41962897 41962945 -79880911 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 905 674 311 0 2 chr11 41965690 41965869 -79877987 + B3A SINE B2 1 176 -40 6 905 848 216 33 0 chr11 41965909 41966090 -79877766 - MTC LTR MaLR -234 187 1 6 905 23 54 0 0 chr11 41966105 41966142 -79877714 + AT_rich Low_complexity Low_complexity 1 37 0 6 905 2427 200 80 6 chr11 41966239 41966790 -79877066 + Lx4B LINE L1 6477 7058 0 6 905 255 103 0 0 chr11 41967970 41968009 -79875847 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 6 905 306 87 0 0 chr11 41968715 41968761 -79875095 + (CATA)n Simple_repeat Simple_repeat 3 48 0 6 905 1239 86 0 0 chr11 41968770 41968944 -79874912 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 6 905 255 31 0 0 chr11 41969340 41969372 -79874484 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 905 417 161 0 0 chr11 41970820 41970907 -79872949 + GA-rich Low_complexity Low_complexity 2 88 0 6 905 750 109 0 0 chr11 41972137 41972256 -79871600 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 6 905 714 258 104 54 chr11 41972589 41972925 -79870931 + Lx8 LINE L1 7121 7473 0 6 905 2315 123 5 30 chr11 41973111 41973561 -79870295 + L1_Mus3 LINE L1 6246 6638 0 6 905 424 157 0 38 chr11 41974042 41974148 -79869708 + (TG)n Simple_repeat Simple_repeat 2 103 0 6 905 1084 95 0 0 chr11 41974182 41974330 -79869526 - B1_Mus1 SINE Alu 0 148 1 6 905 492 18 0 0 chr11 41974952 41975009 -79868847 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 905 384 22 0 0 chr11 41975288 41975333 -79868523 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 905 281 259 12 0 chr11 41975352 41975433 -79868423 + CT-rich Low_complexity Low_complexity 2 83 0 6 905 854 301 98 22 chr11 41975600 41976007 -79867849 + Lx9 LINE L1 7185 7622 -22 6 905 222 267 24 16 chr11 41978685 41978937 -79864919 + GA-rich Low_complexity Low_complexity 1 253 0 6 905 758 76 15 15 chr11 41979798 41979932 -79863924 + (TCTA)n Simple_repeat Simple_repeat 1 134 0 6 905 28 0 0 0 chr11 41980441 41980469 -79863387 + AT_rich Low_complexity Low_complexity 1 28 0 6 905 39 60 0 0 chr11 41983277 41983344 -79860512 + AT_rich Low_complexity Low_complexity 1 67 0 6 905 304 241 34 11 chr11 41983656 41983744 -79860112 - ID_B1 SINE B4 -8 216 127 6 905 1314 268 40 15 chr11 41983768 41984173 -79859683 - MTD LTR MaLR 0 419 5 6 905 23 0 0 0 chr11 41984569 41984592 -79859264 + AT_rich Low_complexity Low_complexity 1 23 0 6 905 204 40 0 0 chr11 41984845 41984870 -79858986 + (CAGTA)n Simple_repeat Simple_repeat 3 27 0 6 905 682 144 0 121 chr11 41986101 41986267 -79857589 + Lx4B LINE L1 6913 7058 0 6 905 22 35 0 0 chr11 41986313 41986342 -79857514 + AT_rich Low_complexity Low_complexity 1 29 0 6 905 362 202 34 40 chr11 41987011 41987131 -79856725 + Lx2B LINE L1 6789 6886 -114 6 905 537 16 0 0 chr11 41987131 41987193 -79856663 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 905 253 278 106 39 chr11 41987193 41987252 -79856604 + Lx2B LINE L1 6573 6633 -3 6 905 23 0 0 0 chr11 41987377 41987400 -79856456 + AT_rich Low_complexity Low_complexity 1 23 0 6 905 247 197 42 0 chr11 41988167 41988238 -79855618 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 905 227 299 30 0 chr11 41988312 41988379 -79855477 + ID4_ SINE ID 1 69 -14 6 905 404 161 12 0 chr11 41988721 41988802 -79855054 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 905 26 0 0 0 chr11 41990789 41990815 -79853041 + AT_rich Low_complexity Low_complexity 1 26 0 6 905 33 43 0 0 chr11 41992602 41992649 -79851207 + AT_rich Low_complexity Low_complexity 1 47 0 6 905 1263 81 0 0 chr11 41993754 41993927 -79849929 + (TC)n Simple_repeat Simple_repeat 1 173 0 6 905 297 140 0 0 chr11 41993927 41993984 -79849872 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 905 264 30 0 0 chr11 41994441 41994474 -79849382 + (T)n Simple_repeat Simple_repeat 1 33 0 6 905 239 203 0 17 chr11 41995326 41995386 -79848470 + A-rich Low_complexity Low_complexity 4 62 0 6 905 211 143 23 23 chr11 41995441 41995484 -79848372 + GA-rich Low_complexity Low_complexity 2 44 0 6 905 447 35 0 0 chr11 41996911 41996968 -79846888 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 905 22 0 0 0 chr11 41998222 41998244 -79845612 + AT_rich Low_complexity Low_complexity 1 22 0 6 905 23 0 0 0 chr11 41999608 41999631 -79844225 + AT_rich Low_complexity Low_complexity 1 23 0 6 905 411 56 0 0 chr11 41999711 41999765 -79844091 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 905 867 123 23 0 chr11 41999766 41999937 -79843919 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 6 905 441 0 0 0 chr11 41999930 41999979 -79843877 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 905 1082 154 28 24 chr11 42001478 42001690 -79842166 - Lx4B LINE L1 -27 7031 6819 1 905 256 378 80 15 chr11 42001690 42001827 -79842029 - Lx8 LINE L1 -221 7252 7107 2 905 23 33 0 0 chr11 42002157 42002187 -79841669 + AT_rich Low_complexity Low_complexity 1 30 0 3 905 1297 220 65 0 chr11 42002187 42002496 -79841360 - Lx3C LINE L1 0 6976 6648 4 905 726 261 61 61 chr11 42002497 42002856 -79841000 - RLTR10D LTR ERVK 0 359 1 5 905 2343 186 70 32 chr11 42002861 42003390 -79840466 - Lx3C LINE L1 -329 6647 6099 4 905 721 223 14 0 chr11 42003499 42003647 -79840209 + B1_Mur4 SINE Alu 1 150 0 6 905 338 198 25 0 chr11 42003647 42003728 -79840128 + GA-rich Low_complexity Low_complexity 2 84 0 7 905 287 262 0 0 chr11 42003744 42003828 -79840028 + A-rich Low_complexity Low_complexity 1 84 0 8 905 182 220 0 17 chr11 42003976 42004036 -79839820 + CT-rich Low_complexity Low_complexity 4 62 0 9 905 3076 279 90 98 chr11 42006738 42008040 -79835816 + RLTR22_Mur LTR ERVK 1 1307 -541 1 905 290 87 0 21 chr11 42008040 42008087 -79835769 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1 905 3076 264 89 188 chr11 42008087 42008702 -79835154 + RLTR22_Mur LTR ERVK 770 1638 -210 1 905 27 49 0 0 chr11 42008717 42008758 -79835098 + AT_rich Low_complexity Low_complexity 1 41 0 1 905 749 289 35 15 chr11 42009271 42009471 -79834385 - B3A SINE B2 -12 204 1 1 905 358 281 28 46 chr11 42011118 42011226 -79832630 + B1_Mur2 SINE Alu 42 147 -2 1 905 1089 104 68 17 chr11 42011261 42011437 -79832419 - B2_Mm2 SINE B2 -9 186 2 1 905 254 227 0 0 chr11 42012813 42012857 -79830999 + LTR40b LTR ERVL 114 157 -362 1 905 486 0 0 0 chr11 42012870 42012924 -79830932 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 1 905 288 0 0 0 chr11 42012924 42012955 -79830901 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 905 380 214 66 74 chr11 42013003 42013124 -79830732 + LTR40b LTR ERVL 309 428 -34 1 905 23 54 0 0 chr11 42015151 42015188 -79828668 + AT_rich Low_complexity Low_complexity 1 37 0 1 905 1425 218 45 7 chr11 42018759 42019068 -79824788 + Lx9 LINE L1 6478 6798 -846 2 905 274 146 60 75 chr11 42019495 42019628 -79824228 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 2 905 376 231 15 0 chr11 42019632 42019762 -79824094 + (TA)n Simple_repeat Simple_repeat 2 133 0 2 905 508 333 56 2 chr11 42019896 42020092 -79823764 + LTR40b LTR ERVL 4 209 -310 2 905 7800 51 11 9 chr11 42020369 42021361 -79822495 - L1Md_F2 LINE L1 -1 6581 5588 2 905 464 165 16 8 chr11 42021382 42021504 -79822352 - Lx9 LINE L1 -45 7599 7477 2 905 265 198 125 0 chr11 42021563 42021659 -79822197 - Lx9 LINE L1 -130 7514 7407 2 905 358 98 0 0 chr11 42022144 42022195 -79821661 - L1Md_F3 LINE L1 -377 6207 6157 2 905 3026 73 0 0 chr11 42022198 42022597 -79821259 + L1Md_T LINE L1 6184 6582 0 2 905 4309 195 41 62 chr11 42024027 42024811 -79819045 + RLTR25B LTR ERVK 1 813 -215 2 905 258 32 0 0 chr11 42024811 42024842 -79819014 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 905 495 0 0 0 chr11 42024842 42024896 -79818960 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 905 4309 195 41 62 chr11 42024896 42025160 -79818696 + RLTR25B LTR ERVK 814 1027 -1 2 905 281 376 127 7 chr11 42025140 42025282 -79818574 + B4A SINE B4 4 162 -130 3 905 414 0 0 0 chr11 42025309 42025355 -79818501 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 905 1327 58 58 0 chr11 42025542 42025733 -79818123 - L1_Mus3 LINE L1 -7 6631 6430 3 905 222 37 0 0 chr11 42025894 42025921 -79817935 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 905 314 123 0 30 chr11 42027029 42027096 -79816760 + GA-rich Low_complexity Low_complexity 3 67 0 3 905 213 315 99 18 chr11 42027224 42027395 -79816461 + MIR SINE MIR 1 188 -88 3 905 335 41 0 20 chr11 42027428 42027478 -79816378 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 905 357 264 152 17 chr11 42027675 42027852 -79816004 - Lx8 LINE L1 -6 7467 7267 3 905 745 314 28 18 chr11 42027888 42028173 -79815683 - Lx8 LINE L1 -280 7193 6906 3 905 367 279 75 19 chr11 42028217 42028323 -79815533 + Lx7 LINE L1 5632 5743 -1953 4 905 254 372 27 20 chr11 42028691 42028839 -79815017 + MIRc SINE MIR 5 153 -115 4 905 737 203 12 12 chr11 42029226 42029475 -79814381 + GA-rich Low_complexity Low_complexity 1 249 0 4 905 21 0 0 0 chr11 42029665 42029686 -79814170 + AT_rich Low_complexity Low_complexity 1 21 0 4 905 1563 278 34 59 chr11 42029872 42030349 -79813507 - Lx6 LINE L1 -50 7410 6946 4 905 1141 236 19 11 chr11 42030339 42030601 -79813255 + Lx7 LINE L1 6699 6962 -734 4 905 22 35 0 0 chr11 42031205 42031234 -79812622 + AT_rich Low_complexity Low_complexity 1 29 0 4 905 554 254 45 23 chr11 42032014 42032147 -79811709 + B3A SINE B2 1 136 -62 4 905 3780 142 33 27 chr11 42032468 42032810 -79811046 + RMER6A LTR ERVK 1 354 -402 4 905 3476 18 0 10 chr11 42032810 42033210 -79810646 - MTA_Mm LTR MaLR 0 396 1 4 905 3780 142 33 27 chr11 42033210 42033542 -79810314 + RMER6A LTR ERVK 355 679 -77 4 905 1999 116 44 34 chr11 42033543 42033864 -79809992 + ORR1A3 LTR MaLR 3 326 0 4 905 7891 132 213 24 chr11 42033864 42035510 -79808346 + ORR1A3-int LTR MaLR 1 1957 -6 4 905 474 188 9 90 chr11 42035496 42035607 -79808249 + RMER6A LTR ERVK 655 756 0 4 905 350 343 107 49 chr11 42035874 42036306 -79807550 - MT2A LTR ERVL -71 462 6 5 905 215 125 0 0 chr11 42036464 42036496 -79807360 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 5 905 315 0 0 0 chr11 42036501 42036536 -79807320 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 905 367 303 131 0 chr11 42036569 42036668 -79807188 - RSINE1 SINE B4 -51 114 3 5 905 322 313 57 62 chr11 42036704 42037058 -79806798 - L1MA4 LINE L1 -373 5927 5576 5 905 5024 237 65 41 chr11 42037540 42038826 -79805030 - Lx6 LINE L1 -17 7443 6127 5 905 437 0 0 19 chr11 42040512 42040566 -79803290 + (TTA)n Simple_repeat Simple_repeat 2 54 0 5 905 426 257 17 17 chr11 42041375 42041490 -79802366 - ID_B1 SINE B4 -1 223 109 5 905 237 275 71 71 chr11 42041380 42041521 -79802335 + YREP_Mm Unknown Unknown 182 322 -1490 5 905 23 86 0 0 chr11 42042783 42042841 -79801015 + AT_rich Low_complexity Low_complexity 1 58 0 5 905 495 346 37 0 chr11 42043530 42043744 -79800112 + ID_B1 SINE B4 1 222 -2 6 905 663 157 0 28 chr11 42043993 42044062 -79799794 + polypurine Low_complexity Low_complexity 4 70 0 6 905 1359 67 0 0 chr11 42044062 42044241 -79799615 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 6 905 663 157 0 28 chr11 42044241 42044315 -79799541 + polypurine Low_complexity Low_complexity 71 143 0 6 905 945 247 91 71 chr11 42044756 42045052 -79798804 + MTD LTR MaLR 78 379 -40 6 905 321 212 33 56 chr11 42045128 42045218 -79798638 - MIR SINE MIR -63 199 112 6 905 240 259 149 18 chr11 42045958 42046072 -79797784 - L2 LINE L2 -505 2914 2786 6 905 2285 206 67 13 chr11 42048034 42048559 -79795297 + RLTR12A LTR ERVK 1 553 -15 6 905 1087 76 7 7 chr11 42049195 42049340 -79794516 + B1_Mus2 SINE Alu 3 147 0 6 905 219 36 0 0 chr11 42049369 42049397 -79794459 + (CAA)n Simple_repeat Simple_repeat 1 28 0 6 905 333 247 0 0 chr11 42049690 42049787 -79794069 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 905 687 244 27 85 chr11 42049808 42049996 -79793860 - B3A SINE B2 -16 182 6 7 905 718 171 27 0 chr11 42050636 42050854 -79793002 + CT-rich Low_complexity Low_complexity 1 223 0 7 905 284 262 23 45 chr11 42050871 42050959 -79792897 - PB1D10 SINE Alu -20 97 12 7 905 1173 309 35 14 chr11 42050959 42051330 -79792526 - MTE2b LTR MaLR 0 379 1 7 905 1225 232 54 97 chr11 42051335 42051726 -79792130 - ORR1D1 LTR MaLR 0 374 1 7 905 725 279 26 42 chr11 42053281 42053472 -79790384 + MTEa LTR MaLR 28 215 -164 7 905 272 158 79 0 chr11 42053476 42053552 -79790304 + CT-rich Low_complexity Low_complexity 2 83 0 7 905 357 315 36 92 chr11 42053554 42053750 -79790106 + MTEa LTR MaLR 195 379 0 7 905 1969 195 47 24 chr11 42053811 42054236 -79789620 - RMER10A LTR ERVL -7 435 1 7 905 208 254 0 14 chr11 42054605 42054677 -79789179 + T-rich Low_complexity Low_complexity 1 71 0 7 905 3308 132 58 53 chr11 42055619 42056217 -79787639 - MT2B LTR ERVL 0 601 1 8 905 609 40 0 0 chr11 42056257 42056333 -79787523 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 905 443 291 39 0 chr11 42056337 42056440 -79787416 - RSINE1 SINE B4 -38 127 21 8 905 21 36 0 0 chr11 42059224 42059252 -79784604 + AT_rich Low_complexity Low_complexity 1 28 0 8 905 1636 31 0 0 chr11 42060275 42060466 -79783390 - B2_Mm1t SINE B2 -1 192 2 8 905 274 319 8 25 chr11 42062079 42062198 -79781658 + MER103 DNA DNA 47 163 -3 8 905 345 277 118 45 chr11 42062297 42062572 -79781284 + L1MA4 LINE L1 5650 5938 -353 8 905 186 43 0 0 chr11 42062572 42062595 -79781261 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 905 235 286 99 96 chr11 42062595 42062625 -79781231 + L1MA4 LINE L1 5939 5955 -336 8 905 312 242 2 0 chr11 42062795 42062857 -79780999 - PB1D9 SINE Alu -72 77 15 8 905 1783 195 10 62 chr11 42062861 42063266 -79780590 + ORR1C2 LTR MaLR 1 384 0 8 905 22 0 0 0 chr11 42063360 42063382 -79780474 + AT_rich Low_complexity Low_complexity 1 22 0 9 905 225 0 0 0 chr11 42063887 42063912 -79779944 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 9 905 1560 214 44 25 chr11 42064318 42064725 -79779131 + RLTR28 LTR ERVL 38 452 -72 9 905 330 26 0 0 chr11 42064758 42064797 -79779059 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 905 185 163 20 0 chr11 42064820 42064869 -79778987 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 9 905 26 0 0 0 chr11 42064960 42064986 -79778870 + AT_rich Low_complexity Low_complexity 1 26 0 9 905 243 0 0 0 chr11 42066264 42066291 -79777565 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 905 243 0 0 0 chr11 42066291 42066317 -79777539 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 905 282 342 0 62 chr11 42066317 42066398 -79777458 - PB1D10 SINE Alu -36 81 6 9 905 26 64 0 0 chr11 42066405 42066452 -79777404 + AT_rich Low_complexity Low_complexity 1 47 0 9 905 45 0 0 0 chr11 42066797 42066842 -79777014 + AT_rich Low_complexity Low_complexity 1 45 0 1 905 192 40 0 0 chr11 42068348 42068373 -79775483 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 1 905 465 167 0 0 chr11 42068556 42068658 -79775198 + (TG)n Simple_repeat Simple_repeat 2 103 0 1 905 22 0 0 0 chr11 42068856 42068878 -79774978 + AT_rich Low_complexity Low_complexity 1 22 0 1 905 1776 136 0 3 chr11 42068878 42069166 -79774690 - L1_Mus4 LINE L1 -7 6629 6343 1 905 756 253 24 54 chr11 42069344 42069549 -79774307 - Lx5 LINE L1 -362 6688 6490 1 905 602 147 18 0 chr11 42069573 42069682 -79774174 + B1_Mus2 SINE Alu 37 147 0 1 905 423 365 62 44 chr11 42069957 42070344 -79773512 - Charlie24 DNA MER1_type -1380 1070 677 1 905 3688 54 4 2 chr11 42070427 42070893 -79772963 + L1Md_F2 LINE L1 6116 6582 0 1 905 25 65 0 0 chr11 42071822 42071868 -79771988 + AT_rich Low_complexity Low_complexity 1 46 0 1 905 411 129 118 0 chr11 42072097 42072190 -79771666 - Lx4A LINE L1 -2 7056 6953 1 905 486 0 0 0 chr11 42072572 42072626 -79771230 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 905 441 254 89 55 chr11 42072898 42073190 -79770666 + L1MA9 LINE L1 6009 6310 -2 1 905 1424 190 7 11 chr11 42073458 42073729 -79770127 + RMER6A LTR ERVK 483 752 -4 1 113 2890 173 18 0 chr11 42073729 42074225 -79769631 + MurERV4-int LTR ERVK 2233 2737 -2523 1 906 450 115 122 187 chr11 42074213 42074278 -79769578 + MurERV4-int LTR ERVK 5127 5202 -58 1 906 1439 53 37 0 chr11 42074278 42074465 -79769391 + B2_Mm2 SINE B2 1 194 -1 1 906 450 115 122 187 chr11 42074465 42074538 -79769318 + MurERV4-int LTR ERVK 5203 5256 -4 1 906 2121 212 9 57 chr11 42074538 42074993 -79768863 + RMER4A LTR ERVK 34 466 0 1 906 698 311 15 0 chr11 42074993 42075199 -79768657 - Lx8 LINE L1 -785 6688 6480 1 906 1104 179 18 14 chr11 42075568 42075789 -79768067 + URR1A DNA MER1_type 1 222 -4 1 906 539 315 15 5 chr11 42076501 42076705 -79767151 - Lx9 LINE L1 -171 7473 7268 1 906 1419 307 27 13 chr11 42076711 42077189 -79766667 + Lx9 LINE L1 6776 7260 -384 1 906 267 31 0 0 chr11 42078784 42078816 -79765040 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 906 320 182 85 68 chr11 42078816 42078934 -79764922 + Lx9 LINE L1 7517 7636 -8 1 906 221 267 36 96 chr11 42079206 42079289 -79764567 + PB1D7 SINE Alu 17 94 -26 1 906 465 97 0 0 chr11 42079472 42079544 -79764312 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 906 1029 89 0 0 chr11 42079711 42079857 -79763999 + (TA)n Simple_repeat Simple_repeat 2 147 0 1 906 1009 239 15 0 chr11 42079924 42080129 -79763727 + B3 SINE B2 3 210 -6 1 906 459 312 81 43 chr11 42080785 42081157 -79762699 + L1MD2 LINE L1 5880 6265 -94 1 906 432 0 0 0 chr11 42081307 42081355 -79762501 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 906 339 344 79 21 chr11 42081382 42081712 -79762144 + L1MCb LINE L1 470 818 -5604 1 906 786 109 0 0 chr11 42082075 42082203 -79761653 + (GGA)n Simple_repeat Simple_repeat 2 129 0 1 906 961 217 169 54 chr11 42082400 42082786 -79761070 - RMER4B LTR ERVK -51 560 55 1 906 35 41 0 0 chr11 42082823 42082872 -79760984 + AT_rich Low_complexity Low_complexity 1 49 0 1 906 2605 97 5 3 chr11 42082872 42083253 -79760603 + L1_Mus3 LINE L1 6248 6629 -9 1 906 309 312 90 7 chr11 42083294 42083449 -79760407 + L1MCb LINE L1 1348 1515 -4908 1 906 1728 257 274 15 chr11 42083509 42084176 -79759680 + RMER1B Other Other 61 900 -166 1 906 3739 223 24 20 chr11 42084529 42085409 -79758447 + Lx2B LINE L1 5962 6844 -156 1 906 3078 40 0 0 chr11 42085629 42086001 -79757855 - L1Md_F2 LINE L1 -9 6573 6202 1 906 483 145 0 0 chr11 42086034 42086117 -79757739 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 1 906 418 326 70 35 chr11 42086779 42086979 -79756877 + B4A SINE B4 1 207 -85 1 906 354 98 0 0 chr11 42087077 42087128 -79756728 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 906 262 391 36 29 chr11 42088419 42088556 -79755300 - MER117 DNA MER1_type -42 155 18 1 906 1525 283 90 65 chr11 42088672 42089620 -79754236 - RMER17B LTR ERVK -42 866 8 1 906 313 206 48 10 chr11 42089711 42089814 -79754042 - Lx9 LINE L1 -48 7596 7490 1 906 704 227 7 7 chr11 42089850 42090005 -79753851 + Lx9 LINE L1 6494 6648 -996 1 906 1954 226 69 66 chr11 42090227 42090906 -79752950 - Lx9 LINE L1 -1 7643 6963 1 906 48 88 0 0 chr11 42091372 42091497 -79752359 + AT_rich Low_complexity Low_complexity 1 125 0 1 906 21 0 0 0 chr11 42092723 42092744 -79751112 + AT_rich Low_complexity Low_complexity 1 21 0 1 906 2280 181 64 23 chr11 42092768 42093129 -79750727 + RMER1A Other Other 525 895 -135 1 906 309 51 0 0 chr11 42093129 42093168 -79750688 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 906 2280 181 64 23 chr11 42093168 42093292 -79750564 + RMER1A Other Other 896 1030 0 1 906 234 343 108 0 chr11 42094753 42094855 -79749001 + BC1_Mm scRNA scRNA 3 115 -37 1 906 321 213 16 0 chr11 42094998 42095059 -79748797 + MTEb LTR MaLR 1 62 -317 1 906 241 194 60 0 chr11 42095079 42095146 -79748710 + Lx9 LINE L1 7490 7560 -84 1 906 273 57 0 0 chr11 42096442 42096477 -79747379 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 906 1825 208 10 52 chr11 42096631 42097016 -79746840 - ORR1C1 LTR MaLR 0 378 10 1 906 640 240 7 7 chr11 42097032 42097179 -79746677 + B1_Mur3 SINE Alu 1 147 -2 1 906 1780 187 58 0 chr11 42097676 42097985 -79745871 + MTC LTR MaLR 1 327 -94 1 906 1848 196 27 29 chr11 42097985 42098427 -79745429 + MTC-int LTR MaLR 1 441 -817 1 906 266 286 55 45 chr11 42098571 42098681 -79745175 + RLTR26 LTR ERVK 169 279 -363 1 906 3695 198 54 41 chr11 42098925 42099737 -79744119 + MTC-int LTR MaLR 436 1258 0 1 906 2132 157 82 3 chr11 42099737 42100127 -79743729 + MTC LTR MaLR 1 421 0 1 906 276 290 79 111 chr11 42100627 42100817 -79743039 - RLTR25B LTR ERVK 0 1103 920 1 906 291 352 52 92 chr11 42101533 42101858 -79741998 - RLTR25B LTR ERVK -716 312 1 1 906 312 27 0 0 chr11 42102062 42102099 -79741757 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 906 549 30 0 0 chr11 42102104 42102171 -79741685 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 906 917 350 46 11 chr11 42102315 42102662 -79741194 + Lx8 LINE L1 6966 7324 -149 1 906 30524 95 32 5 chr11 42103391 42105154 -79738702 + L1_Mur1 LINE L1 1026 2869 -3017 1 906 861 38 0 0 chr11 42105154 42105259 -79738597 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 1 906 30524 92 34 6 chr11 42105259 42108161 -79735695 + L1_Mur1 LINE L1 2870 5885 -1 1 906 4898 95 3 3 chr11 42108163 42108839 -79735017 + Lx3_Mus LINE L1 6334 7009 0 1 906 207 157 19 19 chr11 42108840 42108868 -79734988 + A-rich Low_complexity Low_complexity 1 28 0 1 906 733 231 7 7 chr11 42108868 42109016 -79734840 + B1_Mus1 SINE Alu 1 148 0 1 906 207 157 19 19 chr11 42109016 42109039 -79734817 + A-rich Low_complexity Low_complexity 29 52 0 1 906 189 0 0 0 chr11 42109766 42109787 -79734069 + (T)n Simple_repeat Simple_repeat 1 21 0 1 906 224 329 12 24 chr11 42109827 42109911 -79733945 + ID4 SINE ID 1 83 0 1 906 709 58 10 10 chr11 42110854 42110958 -79732898 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 906 203 151 39 64 chr11 42111210 42111288 -79732568 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 1 906 324 70 0 0 chr11 42111288 42111331 -79732525 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 1 906 1232 217 71 7 chr11 42111331 42111600 -79732256 + MTD LTR MaLR 134 419 0 1 906 625 295 72 9 chr11 42111636 42111954 -79731902 - L1MA5A LINE L1 -412 5885 5548 1 906 262 86 52 0 chr11 42112852 42112910 -79730946 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 1 906 1263 158 21 21 chr11 42113000 42113239 -79730617 - Lx2B LINE L1 -330 6670 6432 1 906 1394 144 104 31 chr11 42113240 42113527 -79730329 + Lx2 LINE L1 6687 6994 -3 1 906 210 158 0 0 chr11 42114247 42114285 -79729571 + A-rich Low_complexity Low_complexity 1 38 0 1 906 507 17 0 0 chr11 42114285 42114345 -79729511 + (CAAAC)n Simple_repeat Simple_repeat 2 61 0 1 906 575 371 58 8 chr11 42114355 42114616 -79729240 + B4 SINE B4 8 281 -11 1 906 438 53 0 0 chr11 42114642 42114699 -79729157 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 906 23 54 0 0 chr11 42114736 42114773 -79729083 + AT_rich Low_complexity Low_complexity 1 37 0 1 906 1994 74 4 4 chr11 42115055 42115325 -79728531 - L1_Mus2 LINE L1 0 6566 6297 1 906 443 70 0 14 chr11 42115325 42115398 -79728458 + (CAAAC)n Simple_repeat Simple_repeat 5 76 0 1 906 251 217 0 0 chr11 42115408 42115454 -79728402 + B4A SINE B4 8 53 -239 1 906 9500 90 5 3 chr11 42115621 42117430 -79726426 - L1_Mus2 LINE L1 -270 6296 4481 1 906 333 236 41 41 chr11 42118097 42118194 -79725662 - MER103 DNA DNA -67 99 3 1 906 486 0 0 0 chr11 42118664 42118718 -79725138 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 906 669 103 57 13 chr11 42118725 42118883 -79724973 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 1 906 612 228 93 5 chr11 42118912 42119128 -79724728 - Lx9 LINE L1 -40 7604 7370 1 906 204 306 28 0 chr11 42119133 42119205 -79724651 + MIR SINE MIR 116 189 -73 1 906 24 53 0 0 chr11 42120149 42120187 -79723669 + AT_rich Low_complexity Low_complexity 1 38 0 1 906 243 61 0 0 chr11 42120492 42120525 -79723331 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1 906 25 0 0 0 chr11 42120555 42120580 -79723276 + AT_rich Low_complexity Low_complexity 1 25 0 1 906 1520 11 6 0 chr11 42121343 42121521 -79722335 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 906 259 311 0 39 chr11 42121531 42121608 -79722248 - ID4_ SINE ID -7 76 3 1 906 233 188 0 28 chr11 42121808 42121879 -79721977 + (TCTCTG)n Simple_repeat Simple_repeat 3 71 0 1 906 414 0 0 0 chr11 42121885 42121931 -79721925 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 906 356 304 119 45 chr11 42124053 42124229 -79719627 - MER20 DNA MER1_type -1 218 30 1 906 884 237 4 62 chr11 42124860 42125085 -79718771 - B3 SINE B2 0 216 5 1 906 207 88 0 0 chr11 42126994 42127028 -79716828 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 2 906 396 59 0 0 chr11 42127555 42127606 -79716250 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 906 243 0 0 0 chr11 42128074 42128101 -79715755 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 906 441 0 0 0 chr11 42129204 42129253 -79714603 + (ATATG)n Simple_repeat Simple_repeat 5 53 0 2 906 22 35 0 0 chr11 42129297 42129326 -79714530 + AT_rich Low_complexity Low_complexity 1 29 0 2 906 226 239 27 27 chr11 42129523 42129596 -79714260 + MADE2 DNA Mariner 8 80 0 2 906 34 24 0 0 chr11 42131895 42131936 -79711920 + AT_rich Low_complexity Low_complexity 1 41 0 2 906 309 370 0 13 chr11 42132351 42132507 -79711349 + CT-rich Low_complexity Low_complexity 1 154 0 2 906 324 0 0 0 chr11 42133619 42133655 -79710201 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 906 243 88 0 0 chr11 42134110 42134144 -79709712 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 906 272 94 0 19 chr11 42135781 42135835 -79708021 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2 906 594 348 43 5 chr11 42135839 42136047 -79707809 + ID_B1 SINE B4 6 221 -3 2 906 498 61 0 0 chr11 42136832 42136898 -79706958 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 906 303 49 0 0 chr11 42138020 42138061 -79705795 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 906 1745 257 92 10 chr11 42138769 42139261 -79704595 + MT2A LTR ERVL 1 532 -1 2 906 188 292 101 0 chr11 42139266 42139338 -79704518 + MIRc SINE MIR 85 165 -111 2 906 276 149 0 0 chr11 42140180 42140227 -79703629 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 2 906 564 15 0 0 chr11 42140226 42140291 -79703565 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 906 250 131 68 45 chr11 42140315 42140403 -79703453 + Lx9 LINE L1 7477 7566 -78 2 906 727 210 22 0 chr11 42140538 42140676 -79703180 - B1_Mur3 SINE Alu -5 144 4 2 906 607 280 32 11 chr11 42140816 42141004 -79702852 - Lx8 LINE L1 -873 6600 6409 2 906 474 108 0 0 chr11 42141150 42141224 -79702632 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 2 906 23 0 0 0 chr11 42141385 42141408 -79702448 + AT_rich Low_complexity Low_complexity 1 23 0 2 906 1087 270 38 16 chr11 42142149 42142465 -79701391 - RMER15 LTR ERVL -6 569 247 2 906 209 77 0 49 chr11 42142569 42142610 -79701246 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 2 906 207 108 27 0 chr11 42142924 42142961 -79700895 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 906 227 368 185 24 chr11 42143217 42143324 -79700532 + MamGypLTR1c LTR Gypsy 68 184 -619 2 906 225 0 0 0 chr11 42143324 42143349 -79700507 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 906 227 368 185 24 chr11 42143349 42143528 -79700328 + MamGypLTR1c LTR Gypsy 185 399 -404 2 906 185 243 63 63 chr11 42144126 42144205 -79699651 - L3b LINE CR1 -178 304 226 2 906 335 366 42 80 chr11 42144783 42145119 -79698737 - MLT2B1 LTR ERVL -197 323 1 2 906 394 387 42 10 chr11 42145402 42145416 -79698440 - B3 SINE B2 -17 199 186 2 906 360 43 0 0 chr11 42145416 42145462 -79698394 + (TATG)n Simple_repeat Simple_repeat 1 46 0 2 906 394 387 42 10 chr11 42145462 42145640 -79698216 - B3 SINE B2 -31 185 2 2 906 382 312 67 76 chr11 42145856 42146081 -79697775 - RMER12 LTR ERVK 0 1322 1100 2 906 33636 82 16 2 chr11 42146190 42152356 -79691500 - L1Md_F2 LINE L1 0 6582 331 2 906 2131 148 11 13 chr11 42152408 42152785 -79691071 - RMER17D2 LTR ERVK -433 376 1 2 906 1557 149 34 0 chr11 42152785 42153053 -79690803 + L1_Mm LINE L1 5228 5504 -379 2 906 1581 241 8 46 chr11 42153044 42153410 -79690446 - Lx5 LINE L1 -478 6572 6221 2 906 783 215 97 10 chr11 42153427 42153634 -79690222 + Lx6 LINE L1 5697 5921 -1539 2 906 230 136 23 0 chr11 42153658 42153702 -79690154 + Lx5 LINE L1 7006 7050 0 2 906 535 287 22 63 chr11 42153705 42153976 -79689880 + Lx6 LINE L1 5905 6164 -1296 2 906 1184 252 23 4 chr11 42153969 42154232 -79689624 - Lx6 LINE L1 -1038 6422 6155 2 906 308 349 80 13 chr11 42155102 42155326 -79688530 - L1M4c LINE L1 -4730 1654 1416 2 906 227 265 15 0 chr11 42155611 42155679 -79688177 + GA-rich Low_complexity Low_complexity 2 70 0 2 906 261 83 0 0 chr11 42155682 42155718 -79688138 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 2 906 307 264 56 0 chr11 42155737 42155809 -79688047 - RSINE1 SINE B4 -19 146 71 2 906 1795 302 71 60 chr11 42156015 42156633 -79687223 - Lx9 LINE L1 -85 7559 6905 2 906 5083 96 3 3 chr11 42156633 42157345 -79686511 + L1_Mus1 LINE L1 5856 6567 0 2 906 1795 302 71 60 chr11 42157345 42157641 -79686215 - Lx9 LINE L1 -740 6904 6635 2 906 219 88 0 0 chr11 42157667 42157701 -79686155 + (T)n Simple_repeat Simple_repeat 1 34 0 2 906 1092 102 7 0 chr11 42157704 42157851 -79686005 - B1_Mus1 SINE Alu 0 148 1 2 906 681 286 57 3 chr11 42157854 42158094 -79685762 - Lx9 LINE L1 -1018 6626 6259 2 906 1191 317 100 37 chr11 42158221 42159177 -79684679 - L1M4 LINE L1 -1814 4332 3344 2 906 1308 256 74 37 chr11 42159177 42159582 -79684274 + MTC LTR MaLR 1 420 -1 2 906 1191 317 100 37 chr11 42159582 42160228 -79683628 - L1M4 LINE L1 -2803 3343 2629 2 906 775 143 8 0 chr11 42160519 42160645 -79683211 - URR1B DNA MER1_type 0 225 99 2 906 1153 101 6 6 chr11 42160678 42160858 -79682998 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 906 22 0 0 0 chr11 42160915 42160937 -79682919 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 5314 87 18 0 chr11 42160988 42161721 -79682135 - Lx3_Mus LINE L1 0 7009 6264 2 906 6113 164 46 61 chr11 42161726 42163247 -79680609 - Lx3_Mus LINE L1 -44 6965 5488 2 906 573 15 0 0 chr11 42163247 42163313 -79680543 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 906 3108 108 49 0 chr11 42163313 42163384 -79680472 - Lx3_Mus LINE L1 -399 5487 5414 2 906 1974 100 153 9 chr11 42163360 42163693 -79680163 + Lx3_Mus LINE L1 5042 5422 -464 2 906 630 221 9 0 chr11 42163694 42163807 -79680049 - URR1B DNA MER1_type -111 114 1 2 906 290 47 0 44 chr11 42164498 42164543 -79679313 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 2 906 629 305 79 55 chr11 42164583 42164836 -79679020 - B4A SINE B4 -28 264 6 2 906 2041 196 8 0 chr11 42165148 42165525 -79678331 - Lx2A1 LINE L1 0 7008 6629 2 906 2670 174 32 8 chr11 42165525 42166022 -79677834 + Lx2B LINE L1 6103 6611 -389 2 906 784 331 75 28 chr11 42166080 42166680 -79677176 + L1MC1 LINE L1 5705 6332 -1 2 906 256 243 47 37 chr11 42166660 42166767 -79677089 + L1MD2 LINE L1 5879 5986 -373 2 906 373 262 28 32 chr11 42166808 42166968 -79676888 + L1MC3 LINE L1 7334 7466 -319 2 906 652 242 115 27 chr11 42167042 42167225 -79676631 + B3 SINE B2 2 200 -16 2 906 285 51 0 0 chr11 42167276 42167315 -79676541 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 906 325 344 108 16 chr11 42167431 42167617 -79676239 - MLT1K LTR MaLR -37 558 356 2 906 311 235 0 69 chr11 42168490 42168577 -79675279 + Lx7 LINE L1 7290 7370 -326 2 906 7928 169 14 32 chr11 42168581 42170138 -79673718 + L1_Mur1 LINE L1 4159 5686 -200 2 906 223 139 47 0 chr11 42170363 42170406 -79673450 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2 906 397 254 8 33 chr11 42170408 42170530 -79673326 + Lx7 LINE L1 7578 7696 0 2 906 289 284 55 14 chr11 42171194 42171367 -79672489 + L1MA4 LINE L1 5769 5947 -344 2 906 21 0 0 0 chr11 42171707 42171728 -79672128 + AT_rich Low_complexity Low_complexity 1 21 0 2 906 2095 100 3 99 chr11 42172220 42172564 -79671292 + RLTR10E LTR ERVK 1 311 0 2 906 480 299 43 38 chr11 42172629 42172657 -79671199 - B2_Mm2 SINE B2 -10 185 160 2 906 336 48 0 0 chr11 42172657 42172699 -79671157 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 906 597 299 43 38 chr11 42172699 42172854 -79671002 - B3A SINE B2 -36 162 1 2 906 23 0 0 0 chr11 42172947 42172970 -79670886 + AT_rich Low_complexity Low_complexity 1 23 0 2 906 313 186 56 27 chr11 42173144 42173264 -79670592 + L1M2 LINE L1 2454 2563 -4286 2 906 399 318 119 10 chr11 42173420 42173614 -79670242 - Lx8 LINE L1 -144 7329 7115 2 906 2305 268 23 27 chr11 42173621 42174285 -79669571 + Lx8 LINE L1 6464 7124 -349 2 906 972 244 0 5 chr11 42175087 42175289 -79668567 + B3 SINE B2 14 214 -2 2 906 25 31 0 0 chr11 42175387 42175419 -79668437 + AT_rich Low_complexity Low_complexity 1 32 0 2 906 191 88 0 29 chr11 42175716 42175751 -79668105 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 906 1153 287 49 25 chr11 42175875 42176233 -79667623 + Lx6 LINE L1 6968 7335 -125 2 906 628 104 9 0 chr11 42176233 42176339 -79667517 + L1_Mus1 LINE L1 6461 6567 0 2 906 464 199 0 29 chr11 42176348 42176488 -79667368 + Lx6 LINE L1 7325 7460 0 2 906 2646 95 0 0 chr11 42176826 42177193 -79666663 - L1_Mm LINE L1 -1249 4634 4268 2 906 2199 83 3 3 chr11 42177193 42177494 -79666362 + L1_Mus2 LINE L1 6266 6566 0 2 906 929 164 11 0 chr11 42178692 42178869 -79664987 + GA-rich Low_complexity Low_complexity 2 180 0 2 906 474 352 20 34 chr11 42180620 42180914 -79662942 + B4A SINE B4 3 292 0 2 906 234 294 20 61 chr11 42181946 42182044 -79661812 + B2_Mm2 SINE B2 6 99 -96 2 906 28 0 0 0 chr11 42182169 42182197 -79661659 + AT_rich Low_complexity Low_complexity 1 28 0 2 906 304 274 21 84 chr11 42182299 42182538 -79661318 - RMER17D LTR ERVK -433 456 233 2 906 609 284 92 44 chr11 42182800 42183006 -79660850 + B4A SINE B4 10 225 -67 2 906 486 0 0 0 chr11 42183011 42183065 -79660791 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2 906 248 268 0 35 chr11 42183076 42183134 -79660722 + B4A SINE B4 219 274 -18 2 906 648 59 0 0 chr11 42184357 42184442 -79659414 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 906 22 0 0 0 chr11 42185371 42185393 -79658463 + AT_rich Low_complexity Low_complexity 1 22 0 2 906 238 316 18 0 chr11 42185921 42186035 -79657821 - L1M5 LINE L1 -646 5798 5683 2 906 772 172 241 0 chr11 42186866 42187040 -79656816 + B3 SINE B2 1 216 0 2 906 477 322 103 17 chr11 42187077 42187425 -79656431 - L1M5 LINE L1 -1433 4713 4336 2 906 817 203 21 47 chr11 42187453 42187644 -79656212 + ORR1B2 LTR MaLR 1 186 -181 2 906 3133 32 0 0 chr11 42187783 42188157 -79655699 - L1Md_T LINE L1 -1 6581 6208 2 906 2853 170 76 54 chr11 42188158 42188829 -79655027 - RMER6C LTR ERVK -4 686 1 2 906 718 230 73 0 chr11 42188829 42188994 -79654862 + ORR1B2 LTR MaLR 191 367 0 2 906 27 0 0 0 chr11 42189054 42189081 -79654775 + AT_rich Low_complexity Low_complexity 1 27 0 2 906 181 293 142 33 chr11 42189222 42189342 -79654514 - MIR SINE MIR -10 252 120 2 906 1022 85 35 14 chr11 42189963 42190106 -79653750 - B1_Mus2 SINE Alu -1 146 1 3 906 22 0 0 0 chr11 42190151 42190173 -79653683 + AT_rich Low_complexity Low_complexity 1 22 0 3 906 452 305 227 41 chr11 42190236 42190552 -79653304 + ORR1E LTR MaLR 1 375 -4 3 906 336 48 0 0 chr11 42190760 42190802 -79653054 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 906 420 20 0 0 chr11 42191677 42191726 -79652130 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 906 256 291 23 0 chr11 42193988 42194074 -79649782 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 3 906 7964 35 3 2 chr11 42194240 42195192 -79648664 - L1Md_F2 LINE L1 -4 6578 5626 3 906 294 29 0 0 chr11 42196480 42196515 -79647341 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 3 906 404 353 6 0 chr11 42196704 42196860 -79646996 - Tigger5 DNA MER2_type -4 2402 2246 3 906 213 132 0 0 chr11 42197447 42197485 -79646371 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 3 906 244 206 211 32 chr11 42197519 42197614 -79646242 - RMER2 LTR ERV1 -11 556 445 3 906 438 213 79 0 chr11 42198239 42198366 -79645490 + Lx2 LINE L1 6859 6995 -2 3 906 384 40 0 0 chr11 42198481 42198531 -79645325 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 906 420 20 0 0 chr11 42199249 42199298 -79644558 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 906 570 75 0 0 chr11 42199298 42199377 -79644479 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 906 569 318 153 17 chr11 42200432 42200720 -79643136 - MTE2b LTR MaLR -50 329 3 3 906 416 320 5 58 chr11 42201644 42201833 -79642023 + MIRc SINE MIR 61 239 -29 3 906 1264 286 80 34 chr11 42202395 42203285 -79640571 - Lx7 LINE L1 -1675 5969 5005 3 906 593 115 10 0 chr11 42204113 42204209 -79639647 + (GA)n Simple_repeat Simple_repeat 2 98 0 3 906 454 80 0 44 chr11 42204950 42205041 -79638815 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 3 907 438 20 0 0 chr11 42205190 42205241 -79638615 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 907 279 0 0 0 chr11 42206810 42206841 -79637015 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 907 1179 62 0 0 chr11 42207350 42207494 -79636362 + B1_Mus1 SINE Alu 5 148 0 3 907 180 0 0 0 chr11 42207494 42207514 -79636342 + (A)n Simple_repeat Simple_repeat 1 20 0 3 907 723 278 89 3 chr11 42207851 42208165 -79635691 + Lx9 LINE L1 7297 7637 -7 3 907 268 327 24 30 chr11 42208717 42208881 -79634975 - L1ME2 LINE L1 -166 5998 5836 3 907 1012 311 53 23 chr11 42208950 42209605 -79634251 - L1MC LINE L1 -1067 5079 4405 3 907 255 219 34 26 chr11 42209605 42209722 -79634134 + (TA)n Simple_repeat Simple_repeat 2 119 0 3 907 314 194 16 0 chr11 42209741 42209803 -79634053 - MT2A LTR ERVL -470 63 1 3 907 3047 68 7 17 chr11 42209875 42210280 -79633576 - L1_Mus1 LINE L1 -1 6566 6166 3 907 250 333 96 7 chr11 42210474 42210610 -79633246 + L2a LINE L2 3022 3169 -257 3 907 181 390 59 0 chr11 42211137 42211255 -79632601 + MIR3 SINE MIR 33 157 -51 3 907 3236 181 21 18 chr11 42211505 42212129 -79631727 - Lx4B LINE L1 -17 7041 6416 3 907 630 0 0 0 chr11 42212140 42212210 -79631646 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 907 1022 73 0 0 chr11 42212213 42212349 -79631507 - B1_Mus1 SINE Alu -8 140 5 3 907 566 296 27 49 chr11 42212844 42213029 -79630827 + B3A SINE B2 2 182 -16 3 907 236 303 53 29 chr11 42213281 42213451 -79630405 - Lx7 LINE L1 -19 7677 7504 3 907 408 40 0 0 chr11 42213503 42213553 -79630303 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 907 370 327 41 6 chr11 42213558 42213727 -79630129 - Lx7 LINE L1 -384 7312 7138 3 907 780 42 0 0 chr11 42215263 42215359 -79628497 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 907 267 274 33 66 chr11 42215464 42215585 -79628271 + MER5A1 DNA MER1_type 28 144 -22 3 907 210 325 48 12 chr11 42216713 42216797 -79627059 + MIRb SINE MIR 148 234 -34 3 907 827 286 22 0 chr11 42217734 42217919 -79625937 - B3 SINE B2 -27 189 1 3 907 210 292 0 27 chr11 42218101 42218175 -79625681 + (TATG)n Simple_repeat Simple_repeat 3 74 0 3 907 207 404 32 13 chr11 42218548 42218706 -79625150 + MIRb SINE MIR 87 247 -21 3 907 252 0 0 0 chr11 42218745 42218773 -79625083 + (A)n Simple_repeat Simple_repeat 1 28 0 3 907 282 259 103 48 chr11 42218931 42219077 -79624779 + Lx6 LINE L1 7307 7460 0 3 907 198 0 0 0 chr11 42220608 42220630 -79623226 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 907 735 280 15 20 chr11 42220657 42220861 -79622995 - Lx7 LINE L1 -371 7325 7123 3 907 267 31 0 0 chr11 42221839 42221871 -79621985 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 3 907 201 229 39 103 chr11 42222554 42222632 -79621224 + L2a LINE L2 3284 3356 -70 3 907 544 293 132 0 chr11 42222854 42223021 -79620835 + B3 SINE B2 18 206 -10 3 907 248 306 104 43 chr11 42223324 42223488 -79620368 - MER113 DNA MER1_type -311 210 37 3 907 595 278 14 0 chr11 42224161 42224305 -79619551 - B1_Mur2 SINE Alu 0 149 4 3 907 21 71 0 0 chr11 42224382 42224424 -79619432 + AT_rich Low_complexity Low_complexity 1 42 0 3 907 524 359 16 109 chr11 42224428 42224731 -79619125 + B4A SINE B4 5 279 -13 3 907 425 305 125 0 chr11 42225614 42225742 -79618114 - B1_Mur1 SINE Alu -5 144 1 3 907 232 241 0 0 chr11 42225749 42225803 -79618053 + T-rich Low_complexity Low_complexity 2 55 0 3 907 275 127 42 0 chr11 42226737 42226808 -79617048 + Lx5 LINE L1 6970 7043 -7 3 907 284 374 19 81 chr11 42227504 42227664 -79616192 - B4A SINE B4 -124 168 19 3 907 420 20 0 0 chr11 42227821 42227870 -79615986 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 907 324 350 117 44 chr11 42228975 42229453 -79614403 - Lx8 LINE L1 -55 7418 6906 3 907 7306 60 6 0 chr11 42229463 42230374 -79613482 - L1_Mus1 LINE L1 0 6567 5652 3 907 685 308 139 39 chr11 42230375 42230791 -79613065 - Lx8 LINE L1 -575 6898 6441 3 907 1032 108 0 0 chr11 42232100 42232257 -79611599 + (TG)n Simple_repeat Simple_repeat 1 157 0 3 907 200 297 35 105 chr11 42232806 42232949 -79610907 + MIRm SINE MIR 36 168 -108 3 907 462 18 0 0 chr11 42233579 42233634 -79610222 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 907 188 67 33 0 chr11 42233634 42233663 -79610193 + (CG)n Simple_repeat Simple_repeat 1 31 0 3 907 267 31 0 0 chr11 42234454 42234486 -79609370 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 907 195 42 0 0 chr11 42236513 42236537 -79607319 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 907 450 236 0 0 chr11 42237058 42237181 -79606675 + CT-rich Low_complexity Low_complexity 2 124 0 3 907 21 0 0 0 chr11 42237842 42237863 -79605993 + AT_rich Low_complexity Low_complexity 1 21 0 3 907 241 263 57 73 chr11 42239673 42239796 -79604060 - L2a LINE L2 -5 3421 3301 3 907 489 47 0 0 chr11 42240469 42240533 -79603323 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 907 213 182 0 0 chr11 42240582 42240615 -79603241 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 3 907 2815 77 26 47 chr11 42241573 42241996 -79601860 + L1_Mus2 LINE L1 6149 6562 -4 3 907 494 346 0 17 chr11 42242240 42242473 -79601383 + CT-rich Low_complexity Low_complexity 1 228 0 3 907 318 293 123 35 chr11 42242550 42242720 -79601136 - MIRb SINE MIR -8 260 76 3 907 231 36 0 0 chr11 42242845 42242873 -79600983 + (TGG)n Simple_repeat Simple_repeat 2 29 0 3 907 226 425 0 36 chr11 42243769 42243852 -79600004 - MER20B DNA MER1_type -615 168 89 3 907 1683 181 54 0 chr11 42244278 42244609 -79599247 - Lx2 LINE L1 0 6997 6649 3 907 428 307 34 16 chr11 42245970 42246118 -79597738 + B3A SINE B2 39 181 -35 3 907 29 84 0 0 chr11 42246657 42246728 -79597128 + AT_rich Low_complexity Low_complexity 1 71 0 3 907 195 232 0 0 chr11 42247244 42247300 -79596556 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 3 907 1106 76 7 0 chr11 42247481 42247626 -79596230 + B1_Mm SINE Alu 2 147 0 3 907 211 330 85 28 chr11 42247681 42247787 -79596069 - MIRb SINE MIR -117 151 40 3 907 435 38 0 0 chr11 42247804 42247857 -79595999 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 907 5400 93 27 5 chr11 42247922 42248689 -79595167 - Lx3_Mus LINE L1 -17 6992 6209 3 907 331 244 15 83 chr11 42249577 42249841 -79594015 + RMER17D LTR ERVK 241 486 -403 3 907 22 80 0 0 chr11 42250888 42250938 -79592918 + AT_rich Low_complexity Low_complexity 1 50 0 3 907 297 0 0 0 chr11 42252987 42253020 -79590836 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 907 210 118 0 0 chr11 42253020 42253053 -79590803 + (CG)n Simple_repeat Simple_repeat 2 35 0 3 907 24 0 0 0 chr11 42253088 42253112 -79590744 + AT_rich Low_complexity Low_complexity 1 24 0 3 907 750 279 41 94 chr11 42253124 42253539 -79590317 - Lx8 LINE L1 -28 7445 7053 3 907 1313 159 125 12 chr11 42253568 42253775 -79590081 - Lx3C LINE L1 -3 6997 6765 3 907 474 18 0 0 chr11 42253775 42253830 -79590026 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 907 1313 149 123 12 chr11 42253830 42253895 -79589961 - Lx3C LINE L1 -208 6768 6690 3 907 1014 309 43 59 chr11 42253893 42254381 -79589475 - Lx8 LINE L1 -467 7006 6527 3 907 765 203 26 35 chr11 42254428 42254609 -79589247 - B3 SINE B2 -14 179 1 3 907 396 0 0 0 chr11 42254737 42254781 -79589075 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 907 209 231 19 0 chr11 42255831 42255883 -79587973 + T-rich Low_complexity Low_complexity 3 55 0 3 907 423 141 0 0 chr11 42255889 42255967 -79587889 + (TCC)n Simple_repeat Simple_repeat 2 79 0 3 907 676 204 42 0 chr11 42255996 42256138 -79587718 - B1_Mur2 SINE Alu 0 149 2 3 907 331 375 0 7 chr11 42256404 42256549 -79587307 + MIR SINE MIR 65 208 -54 3 907 650 234 7 20 chr11 42256614 42256762 -79587094 + B1_Mur2 SINE Alu 4 149 0 4 907 196 364 35 77 chr11 42256915 42257058 -79586798 + MIR3 SINE MIR 21 157 -51 4 907 22 0 0 0 chr11 42257126 42257148 -79586708 + AT_rich Low_complexity Low_complexity 1 22 0 4 907 273 276 0 26 chr11 42259267 42259279 -79584577 + (CA)n Simple_repeat Simple_repeat 2 12 0 4 907 327 49 0 0 chr11 42259279 42259320 -79584536 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 907 273 276 0 26 chr11 42259320 42259385 -79584471 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 907 293 245 19 6 chr11 42259398 42259554 -79584302 + (CA)n Simple_repeat Simple_repeat 2 159 0 4 907 336 153 0 0 chr11 42259869 42259954 -79583902 + A-rich Low_complexity Low_complexity 1 85 0 4 907 2949 69 8 5 chr11 42261747 42262142 -79581714 - MTA_Mm LTR MaLR 0 396 1 4 907 1342 234 44 33 chr11 42263341 42263708 -79580148 - ORR1D1 LTR MaLR 0 374 4 4 907 437 296 84 48 chr11 42263889 42264056 -79579800 + B4A SINE B4 45 218 -74 4 907 539 237 67 30 chr11 42264556 42264691 -79579165 - B1_Mur2 SINE Alu -8 141 2 4 907 571 228 21 29 chr11 42264772 42264912 -79578944 - B1_Mur1 SINE Alu -1 148 10 4 907 187 432 21 14 chr11 42266046 42266187 -79577669 - L2b LINE L2 -4 3371 3230 4 907 1069 100 6 6 chr11 42266259 42266430 -79577426 + (GGAA)n Simple_repeat Simple_repeat 3 173 0 4 907 1020 231 27 4 chr11 42267121 42267377 -79576479 - Lx9 LINE L1 -145 7499 7238 4 907 277 295 81 40 chr11 42267445 42267544 -79576312 + MLT1B LTR MaLR 48 150 -240 4 907 1213 93 0 0 chr11 42267885 42268047 -79575809 + B2_Mm2 SINE B2 2 163 -32 4 907 199 355 48 77 chr11 42269966 42270134 -79573722 - MIR SINE MIR -42 220 58 4 907 1360 253 30 27 chr11 42270855 42271228 -79572628 - ORR1D1 LTR MaLR 0 374 1 4 907 21 36 0 0 chr11 42271338 42271366 -79572490 + AT_rich Low_complexity Low_complexity 1 28 0 4 907 872 272 117 36 chr11 42271484 42271876 -79571980 - Lx8 LINE L1 0 7473 7050 4 907 249 33 0 0 chr11 42272150 42272180 -79571676 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 907 2146 153 67 3 chr11 42272384 42272745 -79571111 - ORR1B1 LTR MaLR 0 394 11 4 907 1171 129 119 0 chr11 42272814 42273015 -79570841 - URR1A DNA MER1_type -1 225 1 4 907 729 237 12 12 chr11 42273297 42273468 -79570388 + B2_Mm2 SINE B2 3 173 -22 4 907 23 0 0 0 chr11 42274524 42274547 -79569309 + AT_rich Low_complexity Low_complexity 1 23 0 4 907 29 0 0 0 chr11 42275516 42275545 -79568311 + AT_rich Low_complexity Low_complexity 1 29 0 4 907 922 95 7 0 chr11 42275966 42276103 -79567753 + L1_Mus2 LINE L1 6427 6564 -2 4 907 528 149 0 0 chr11 42277069 42277163 -79566693 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 907 518 318 157 13 chr11 42277206 42277359 -79566497 - B3 SINE B2 -27 189 15 4 907 433 380 89 46 chr11 42278358 42278706 -79565150 - MLT1K LTR MaLR -22 573 211 4 907 429 20 0 0 chr11 42278817 42278867 -79564989 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 907 589 292 22 22 chr11 42279324 42279506 -79564350 - B3A SINE B2 -16 182 1 4 907 207 0 0 0 chr11 42280476 42280499 -79563357 + (T)n Simple_repeat Simple_repeat 1 23 0 4 907 861 296 30 66 chr11 42280956 42281375 -79562481 - MTE2a LTR MaLR -2 417 12 4 907 397 320 32 19 chr11 42282029 42282185 -79561671 + L3 LINE CR1 4280 4437 -52 4 907 279 0 0 0 chr11 42282568 42282599 -79561257 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 907 321 93 0 0 chr11 42282685 42282739 -79561117 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 4 907 1010 293 62 57 chr11 42283254 42283589 -79560267 + MTD LTR MaLR 18 363 -56 4 907 1017 218 162 12 chr11 42283589 42283909 -79559947 - ORR1D1 LTR MaLR -2 372 5 4 907 1010 293 62 57 chr11 42283909 42283960 -79559896 + MTD LTR MaLR 364 406 -13 4 907 248 226 0 0 chr11 42284327 42284380 -79559476 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 907 483 314 44 0 chr11 42284390 42284527 -79559329 - RSINE1 SINE B4 -11 154 12 4 907 280 0 64 0 chr11 42285940 42285987 -79557869 + L1Md_F3 LINE L1 6535 6584 0 4 907 380 156 0 11 chr11 42286887 42286978 -79556878 + CT-rich Low_complexity Low_complexity 3 92 0 4 907 4564 140 68 2 chr11 42286988 42287777 -79556079 - Lx3B LINE L1 0 6973 6133 4 907 263 360 8 26 chr11 42289164 42289281 -79554575 + PB1D10 SINE Alu 2 116 -1 4 907 1093 113 12 29 chr11 42289556 42289729 -79554127 - B2_Mm2 SINE B2 -25 170 1 4 907 301 291 8 49 chr11 42289731 42289854 -79554002 - L1MB2 LINE L1 -265 5906 5789 4 907 414 175 0 0 chr11 42289863 42289977 -79553879 + CT-rich Low_complexity Low_complexity 1 114 0 4 907 378 0 0 0 chr11 42289985 42290027 -79553829 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 907 235 248 72 54 chr11 42290050 42290161 -79553695 - L1MB2 LINE L1 -400 5771 5659 4 907 207 69 0 0 chr11 42290303 42290332 -79553524 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4 907 259 218 92 0 chr11 42290700 42290787 -79553069 - L1MB2 LINE L1 -1796 4347 4253 4 907 5593 37 1 6 chr11 42291004 42291701 -79552155 - L1Md_F2 LINE L1 0 6582 5891 4 907 472 279 28 56 chr11 42291792 42291936 -79551920 - B1F1 SINE Alu 0 149 10 4 907 1425 80 26 82 chr11 42292040 42292271 -79551585 - L1_Mus2 LINE L1 -12 6554 6337 4 907 423 0 0 0 chr11 42294525 42294572 -79549284 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 907 219 30 0 29 chr11 42294953 42294987 -79548869 - B3A SINE B2 -165 33 1 4 907 335 250 26 19 chr11 42296573 42296728 -79547128 + (TA)n Simple_repeat Simple_repeat 2 157 0 4 907 466 221 70 1 chr11 42296737 42296849 -79547007 - ORR1D2 LTR MaLR 0 370 206 4 907 395 290 44 52 chr11 42297009 42297238 -79546618 - L1M5 LINE L1 -1429 4717 4491 4 907 1826 97 7 22 chr11 42298249 42298524 -79545332 - L1_Mus3 LINE L1 -6 6632 6362 4 907 438 36 0 0 chr11 42299293 42299349 -79544507 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 907 729 316 60 41 chr11 42299364 42299874 -79543982 - L1MA4 LINE L1 -370 5930 5346 4 907 1088 80 0 0 chr11 42299988 42300126 -79543730 + B1_Mus1 SINE Alu 2 139 -9 4 907 296 24 24 0 chr11 42300126 42300167 -79543689 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 907 3043 319 107 40 chr11 42301908 42302894 -79540962 + Tigger7 DNA MER2_type 12 1024 -1467 4 907 3791 107 9 21 chr11 42302894 42303468 -79540388 - RMER2 LTR ERV1 0 567 1 4 907 3043 319 107 40 chr11 42303468 42304115 -79539741 + Tigger7 DNA MER2_type 1025 1754 -737 4 907 3902 76 27 6 chr11 42304476 42305002 -79538854 - L1_Mus1 LINE L1 0 6567 6031 4 907 838 313 81 30 chr11 42305088 42305978 -79537878 - L1_Rod LINE L1 -3994 1886 953 4 907 1100 203 14 0 chr11 42306950 42307172 -79536684 + URR1A DNA MER1_type 1 225 -1 4 907 189 213 0 0 chr11 42308136 42308183 -79535673 + (ATGGTG)n Simple_repeat Simple_repeat 4 50 0 4 907 2308 128 2 48 chr11 42308530 42308948 -79534908 + Lx2 LINE L1 6598 6996 -1 4 907 24 91 0 0 chr11 42309478 42309544 -79534312 + AT_rich Low_complexity Low_complexity 1 66 0 4 907 1179 223 168 27 chr11 42310805 42311133 -79532723 + ORR1D1 LTR MaLR 1 374 0 4 907 8352 139 46 9 chr11 42311813 42314138 -79529718 - Lx4A LINE L1 -1 7057 4624 4 907 279 0 0 0 chr11 42314138 42314169 -79529687 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 907 8315 129 44 1 chr11 42314169 42314313 -79529543 - Lx4A LINE L1 -1254 4623 4480 4 907 399 309 52 25 chr11 42315066 42315294 -79528562 + MIRb SINE MIR 17 262 0 4 907 760 125 28 0 chr11 42316602 42316746 -79527110 + RMER17B LTR ERVK 316 463 -495 4 907 378 0 0 0 chr11 42317398 42317440 -79526416 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 907 4292 185 69 17 chr11 42317523 42318383 -79525473 - RMER13B LTR ERVK -4 904 1 4 907 29 47 0 0 chr11 42320270 42320313 -79523543 + AT_rich Low_complexity Low_complexity 1 43 0 4 907 1422 263 14 11 chr11 42320566 42321003 -79522853 - L1_Mur3 LINE L1 -113 5767 5355 4 907 35 63 0 0 chr11 42321023 42321086 -79522770 + AT_rich Low_complexity Low_complexity 1 63 0 4 907 34 0 0 0 chr11 42321185 42321219 -79522637 + AT_rich Low_complexity Low_complexity 1 34 0 4 907 279 336 0 38 chr11 42321231 42321364 -79522492 + CT-rich Low_complexity Low_complexity 3 130 0 4 907 1048 285 62 88 chr11 42322231 42322616 -79521240 - MTE2a LTR MaLR 0 379 5 4 907 756 244 25 10 chr11 42322616 42322815 -79521041 + B3 SINE B2 4 205 -11 4 907 273 163 0 0 chr11 42322988 42323037 -79520819 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 907 26 0 0 0 chr11 42323171 42323197 -79520659 + AT_rich Low_complexity Low_complexity 1 26 0 4 907 223 269 28 0 chr11 42323640 42323748 -79520108 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 907 237 208 21 0 chr11 42323772 42323820 -79520036 + Lx7 LINE L1 6103 6151 -1545 4 907 207 170 0 0 chr11 42323838 42323885 -79519971 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 907 1026 24 0 0 chr11 42323904 42324029 -79519827 + (GA)n Simple_repeat Simple_repeat 2 126 0 4 907 1169 295 169 20 chr11 42324048 42325145 -79518711 + Lx8 LINE L1 6208 7468 -5 4 907 522 52 68 17 chr11 42325169 42325286 -79518570 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 4 907 23 33 0 0 chr11 42325918 42325948 -79517908 + AT_rich Low_complexity Low_complexity 1 30 0 4 907 22 0 0 0 chr11 42326362 42326384 -79517472 + AT_rich Low_complexity Low_complexity 1 22 0 4 907 593 0 28 0 chr11 42326497 42326569 -79517287 + (TTATA)n Simple_repeat Simple_repeat 2 75 0 4 907 474 374 86 18 chr11 42326605 42327002 -79516854 - Lx8 LINE L1 -182 7291 6868 4 907 603 268 24 12 chr11 42327397 42327567 -79516289 - Lx8 LINE L1 -490 6983 6812 4 907 1549 120 13 0 chr11 42327567 42327792 -79516064 - ORR1A2 LTR MaLR 0 327 100 4 907 316 279 198 25 chr11 42327799 42327961 -79515895 - Lx8 LINE L1 -674 6799 6610 4 907 360 324 97 55 chr11 42328723 42329033 -79514823 - L3b LINE CR1 -90 392 70 5 907 1026 269 66 68 chr11 42329431 42329929 -79513927 - Lx9 LINE L1 -3 7641 7145 5 907 251 383 0 27 chr11 42329935 42330045 -79513811 - B1F SINE Alu -21 128 22 5 907 1692 29 5 9 chr11 42330247 42330460 -79513396 + L1Md_F2 LINE L1 6368 6579 -3 5 907 566 319 91 5 chr11 42331075 42331261 -79512595 - ID_B1 SINE B4 -16 208 7 5 907 5342 139 20 1 chr11 42331513 42332363 -79511493 - Lx2B LINE L1 -5 6995 6130 5 907 235 264 75 32 chr11 42332579 42332673 -79511183 + L3 LINE CR1 4273 4370 -119 5 907 810 318 5 5 chr11 42333197 42333396 -79510460 - ID_B1 SINE B4 -6 218 20 5 907 3223 189 15 15 chr11 42333464 42334066 -79509790 - Lx2 LINE L1 -4 6993 6392 5 907 611 204 61 0 chr11 42335194 42335341 -79508515 + Lx2B LINE L1 6845 7000 0 5 907 396 204 34 11 chr11 42335601 42335690 -79508166 - LTR33 LTR ERVL -2 513 423 5 113 579 122 0 0 chr11 42336245 42336335 -79507521 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 5 908 288 0 0 0 chr11 42338062 42338094 -79505762 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 908 476 300 66 7 chr11 42338107 42338258 -79505598 - B3A SINE B2 -38 160 1 5 908 1436 197 21 55 chr11 42339181 42339508 -79504348 - Lx9 LINE L1 -195 7449 7134 5 908 304 327 339 0 chr11 42340481 42340646 -79503210 - ID_B1 SINE B4 -1 223 3 5 908 193 277 236 70 chr11 42341436 42341750 -79502106 - L2c LINE L2 -6 3381 3016 5 908 255 86 0 0 chr11 42343458 42343493 -79500363 + U2 snRNA snRNA 1 35 -153 5 908 207 0 0 0 chr11 42343603 42343626 -79500230 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 908 279 0 0 0 chr11 42344506 42344537 -79499319 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 908 330 132 0 0 chr11 42345173 42345226 -79498630 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 5 908 405 0 0 0 chr11 42346329 42346374 -79497482 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 908 283 351 17 9 chr11 42347249 42347364 -79496492 - Charlie5 DNA MER1_type -2503 121 6 5 908 258 91 14 57 chr11 42348715 42348785 -79495071 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 5 908 312 70 0 0 chr11 42349317 42349360 -79494496 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 908 392 247 18 6 chr11 42351234 42351405 -79492451 + CT-rich Low_complexity Low_complexity 3 175 0 5 908 609 218 58 0 chr11 42351419 42351555 -79492301 - B1F SINE Alu -6 143 1 5 908 256 352 60 66 chr11 42351555 42351577 -79492279 - B4 SINE B4 -63 187 64 5 908 407 340 120 51 chr11 42352064 42352612 -79491244 - L1M5 LINE L1 -2404 3742 3157 5 908 240 59 0 0 chr11 42352633 42352667 -79491189 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5 908 1750 236 41 16 chr11 42352678 42353066 -79490790 - Lx6 LINE L1 -49 7411 7014 5 908 2693 61 30 8 chr11 42353110 42353475 -79490381 - L1_Mus1 LINE L1 -2 6565 6193 5 908 2039 62 4 0 chr11 42353475 42353733 -79490123 + L1_Mus1 LINE L1 5929 6187 -380 5 908 411 243 79 22 chr11 42353717 42353856 -79490000 - Lx7 LINE L1 -645 7051 6905 5 908 785 105 45 13 chr11 42355217 42355371 -79488485 + A-rich Low_complexity Low_complexity 3 161 0 5 908 459 0 0 0 chr11 42355795 42355846 -79488010 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 908 292 309 25 12 chr11 42355865 42356021 -79487835 - MIRb SINE MIR -92 176 16 5 908 187 157 39 0 chr11 42356250 42356301 -79487555 + CT-rich Low_complexity Low_complexity 6 58 0 5 908 3234 188 117 57 chr11 42358896 42359848 -79484008 - RMER3D-int LTR ERVK -819 2023 1015 5 908 345 181 44 69 chr11 42359888 42360048 -79483808 - RMER3D-int LTR ERVK -2007 835 680 5 908 401 214 29 44 chr11 42360057 42360194 -79483662 - RMER3D-int LTR ERVK -1692 1150 1016 5 908 963 212 110 48 chr11 42360263 42360599 -79483257 - RMER3D-int LTR ERVK -2365 477 121 5 908 239 370 24 40 chr11 42361253 42361377 -79482479 - MIR SINE MIR -77 185 64 5 908 513 0 0 0 chr11 42363507 42363564 -79480292 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 908 243 0 0 0 chr11 42363564 42363590 -79480266 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 908 237 250 209 43 chr11 42363822 42363985 -79479871 + MER3 DNA MER1_type 14 203 -6 5 908 221 0 35 0 chr11 42364764 42364793 -79479063 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 908 504 32 0 0 chr11 42365324 42365386 -79478470 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 908 2873 39 0 0 chr11 42365714 42366046 -79477810 + IAPEY3_LTR LTR ERVK 1 332 0 5 908 279 374 88 12 chr11 42366664 42366824 -79477032 - MIRb SINE MIR -80 188 17 5 908 222 375 12 0 chr11 42367245 42367325 -79476531 - ID4_ SINE ID -2 81 1 5 908 368 20 20 0 chr11 42369126 42369175 -79474681 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 5 908 712 196 244 0 chr11 42369175 42369343 -79474513 - B3 SINE B2 -7 209 1 5 908 388 294 23 38 chr11 42369902 42370033 -79473823 - Lx8 LINE L1 -538 6935 6807 5 908 2066 150 23 9 chr11 42370033 42370382 -79473474 - ORR1B1 LTR MaLR 0 394 41 5 908 331 320 143 44 chr11 42370448 42370854 -79473002 + Lx8 LINE L1 6945 7390 -83 5 908 21 0 0 0 chr11 42371391 42371412 -79472444 + AT_rich Low_complexity Low_complexity 1 21 0 5 908 611 234 0 54 chr11 42371802 42371951 -79471905 - B1_Mus2 SINE Alu -6 141 1 5 908 190 0 67 0 chr11 42372314 42372344 -79471512 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 908 233 119 24 0 chr11 42373047 42373089 -79470767 + (CAAT)n Simple_repeat Simple_repeat 2 44 0 5 908 216 0 0 0 chr11 42373572 42373596 -79470260 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 5 908 2478 107 123 0 chr11 42374181 42374564 -79469292 - RLTR23 LTR ERV1 0 430 1 5 908 360 354 83 30 chr11 42374583 42374883 -79468973 - L2a LINE L2 0 3426 3111 5 908 842 74 36 14 chr11 42376110 42376248 -79467608 + L1Md_F3 LINE L1 6443 6583 -1 5 908 209 83 0 27 chr11 42377283 42377320 -79466536 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 5 908 717 245 64 20 chr11 42377349 42377553 -79466303 + B3 SINE B2 1 213 -3 5 908 268 162 38 0 chr11 42377602 42377682 -79466174 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 5 908 384 336 0 0 chr11 42377913 42378023 -79465833 + RSINE1 SINE B4 46 155 -10 5 908 23 33 0 0 chr11 42378649 42378679 -79465177 + AT_rich Low_complexity Low_complexity 1 30 0 5 908 28 0 0 0 chr11 42378941 42378969 -79464887 + AT_rich Low_complexity Low_complexity 1 28 0 5 908 22 0 0 0 chr11 42380154 42380176 -79463680 + AT_rich Low_complexity Low_complexity 1 22 0 5 908 315 0 0 0 chr11 42380214 42380249 -79463607 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 908 915 175 63 5 chr11 42380295 42380502 -79463354 - Lx2A1 LINE L1 -24 6984 6766 5 908 2074 143 79 20 chr11 42380474 42380866 -79462990 - Lx2A1 LINE L1 -477 6531 6117 5 908 729 156 35 29 chr11 42380860 42381032 -79462824 + Lx2A1 LINE L1 5981 6153 -855 5 908 768 326 47 15 chr11 42381170 42381578 -79462278 - L1MA5 LINE L1 -438 5862 5442 5 908 236 258 86 76 chr11 42381664 42381769 -79462087 - L1M2 LINE L1 -609 5682 5577 5 908 684 271 108 28 chr11 42381767 42382127 -79461729 - L1MB1 LINE L1 -158 6031 5643 5 908 253 129 102 34 chr11 42382128 42382216 -79461640 + (TATATG)n Simple_repeat Simple_repeat 4 97 0 5 908 431 308 37 22 chr11 42382244 42382380 -79461476 + RSINE1 SINE B4 6 143 -22 5 908 219 88 0 0 chr11 42382387 42382421 -79461435 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 908 22 0 0 0 chr11 42382422 42382444 -79461412 + AT_rich Low_complexity Low_complexity 1 22 0 5 908 3179 207 25 3 chr11 42382845 42383528 -79460328 + L1_Mur3 LINE L1 5018 5715 -165 5 908 2977 248 139 37 chr11 42383541 42384522 -79459334 + Lx6 LINE L1 6367 7447 -13 5 908 251 266 13 0 chr11 42385112 42385191 -79458665 + ID2 SINE ID 2 81 -2 5 908 3643 173 29 21 chr11 42385644 42386342 -79457514 - Lx3C LINE L1 -4 6972 6270 5 908 207 0 0 0 chr11 42386999 42387022 -79456834 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 908 255 81 0 0 chr11 42387022 42387059 -79456797 - B1_Mus2 SINE Alu -3 144 108 5 908 265 225 237 45 chr11 42387086 42387263 -79456593 - L1MC5 LINE L1 -778 7183 6973 5 908 626 323 167 12 chr11 42388550 42389130 -79454726 + L2 LINE L2 1270 1939 -1480 5 908 184 401 94 7 chr11 42389420 42389558 -79454298 + L2 LINE L2 2241 2390 -1029 5 908 227 272 102 16 chr11 42389693 42389880 -79453976 - L1M3 LINE L1 -1668 4472 4270 5 908 334 327 0 0 chr11 42389885 42389992 -79453864 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 908 7289 66 32 4 chr11 42389993 42390983 -79452873 - RLTR13D5 LTR ERVK -5 1018 1 5 908 289 306 9 0 chr11 42390983 42391091 -79452765 + (TG)n Simple_repeat Simple_repeat 1 109 0 5 908 384 282 53 78 chr11 42391091 42391305 -79452551 - L1M3 LINE L1 -1932 4208 4000 5 908 360 59 0 0 chr11 42391305 42391356 -79452500 + (GTTTG)n Simple_repeat Simple_repeat 4 54 0 5 908 384 282 53 78 chr11 42391356 42391425 -79452431 - L1M3 LINE L1 -2141 3999 3933 5 908 240 360 130 24 chr11 42391425 42391473 -79452383 - MLT1F2 LTR MaLR -2 558 508 5 908 458 184 29 10 chr11 42391473 42391577 -79452279 + Lx3B LINE L1 6866 6971 -2 5 908 342 0 0 0 chr11 42391581 42391619 -79452237 + (TAA)n Simple_repeat Simple_repeat 1 38 0 5 908 240 360 130 24 chr11 42391619 42391773 -79452083 - MLT1F2 LTR MaLR -53 507 333 5 908 513 311 102 5 chr11 42392239 42392436 -79451420 + B3 SINE B2 1 216 0 5 908 535 307 77 55 chr11 42392549 42393001 -79450855 + Charlie1b DNA MER1_type 62 523 0 5 908 597 331 112 42 chr11 42393330 42393779 -79450077 - MLT1H LTR MaLR -8 541 43 5 908 207 329 23 23 chr11 42394000 42394087 -79449769 + MIRb SINE MIR 91 177 -91 5 908 1153 124 0 0 chr11 42395619 42395788 -79448068 + B2_Mm2 SINE B2 2 170 -25 5 908 2393 111 56 131 chr11 42395942 42396407 -79447449 - RLTR23 LTR ERV1 0 430 1 5 908 233 330 73 36 chr11 42396582 42396692 -79447164 - PB1D10 SINE Alu -3 114 1 5 908 443 268 78 7 chr11 42397138 42397292 -79446564 + MER5A1 DNA MER1_type 2 166 0 6 908 4472 6 0 0 chr11 42397309 42397806 -79446050 - L1Md_A LINE L1 0 6582 6086 6 908 363 60 0 0 chr11 42398187 42398237 -79445619 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 908 180 0 0 0 chr11 42398642 42398662 -79445194 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 908 2748 267 65 15 chr11 42399574 42400298 -79443558 + RMER1B Other Other 14 1051 -15 6 908 348 296 113 34 chr11 42401545 42401783 -79442073 + Lx8 LINE L1 7217 7473 0 6 908 231 378 61 25 chr11 42402542 42402707 -79441149 + MIRb SINE MIR 8 171 -91 6 908 29 60 0 0 chr11 42402747 42402797 -79441059 + AT_rich Low_complexity Low_complexity 1 50 0 6 908 225 304 24 60 chr11 42403719 42403803 -79440053 + MLT1J-int LTR MaLR 536 616 -771 6 908 443 333 75 79 chr11 42403777 42404005 -79439851 + B4A SINE B4 10 236 -56 6 908 23 0 0 0 chr11 42404627 42404650 -79439206 + AT_rich Low_complexity Low_complexity 1 23 0 6 908 206 80 59 20 chr11 42407476 42407527 -79436329 + CT-rich Low_complexity Low_complexity 2 54 0 6 908 297 0 0 0 chr11 42407544 42407577 -79436279 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 908 195 206 136 45 chr11 42408204 42408270 -79435586 - L2a LINE L2 0 3426 3355 6 908 326 252 41 22 chr11 42408320 42408456 -79435400 + Lx8 LINE L1 5650 5827 -1646 6 908 226 287 10 87 chr11 42410978 42411081 -79432775 - RMER4A LTR ERVK -97 369 275 6 908 464 300 71 25 chr11 42411617 42411856 -79432000 - MER113 DNA MER1_type -209 312 63 6 908 189 348 0 0 chr11 42412043 42412112 -79431744 - MER5B DNA MER1_type -109 69 1 6 908 839 225 10 25 chr11 42413179 42413375 -79430481 + MER20 DNA MER1_type 1 193 -26 6 908 196 322 85 11 chr11 42413556 42413650 -79430206 + MIRb SINE MIR 88 188 -80 6 908 857 37 9 0 chr11 42414936 42415045 -79428811 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 6 908 355 299 0 9 chr11 42415602 42415710 -79428146 - CR1_Mam LINE CR1 -704 1500 1394 6 908 21 0 0 0 chr11 42417419 42417440 -79426416 + AT_rich Low_complexity Low_complexity 1 21 0 6 908 396 0 0 0 chr11 42418559 42418603 -79425253 + (A)n Simple_repeat Simple_repeat 1 44 0 6 908 273 320 18 114 chr11 42418726 42418892 -79424964 + RSINE1 SINE B4 16 165 0 6 908 31 26 0 0 chr11 42420226 42420264 -79423592 + AT_rich Low_complexity Low_complexity 1 38 0 6 908 181 121 30 0 chr11 42421349 42421382 -79422474 - MIR SINE MIR -101 107 74 6 908 316 371 28 21 chr11 42422581 42422724 -79421132 - MER5A1 DNA MER1_type -7 159 16 6 908 246 324 45 45 chr11 42422886 42422996 -79420860 - MIR3 SINE MIR -42 166 57 6 908 255 240 77 126 chr11 42423404 42423547 -79420309 - YREP_Mm Unknown Unknown -1496 316 181 6 908 572 202 41 25 chr11 42423427 42423549 -79420307 + B1F SINE Alu 24 147 -2 6 908 201 39 0 0 chr11 42423550 42423576 -79420280 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 908 630 26 0 0 chr11 42423576 42423651 -79420205 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 908 1135 171 9 39 chr11 42424468 42424699 -79419157 - URR1B DNA MER1_type 0 225 2 6 908 307 311 24 63 chr11 42425120 42425247 -79418609 - MIRc SINE MIR -118 150 29 6 908 258 32 0 0 chr11 42425783 42425814 -79418042 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 908 276 279 88 0 chr11 42426688 42426756 -79417100 + AluG_3 SINE Alu 141 214 -97 6 908 382 282 67 30 chr11 42427478 42427613 -79416243 - B1_Mur3 SINE Alu -2 147 8 6 908 508 219 0 9 chr11 42428133 42428239 -79415617 - RLTR21 LTR ERVK -3 1569 1465 6 908 2972 199 54 14 chr11 42428283 42428972 -79414884 - RMER12B LTR ERVK -196 1208 493 6 908 2260 234 19 81 chr11 42428950 42429544 -79414312 - RMER12B LTR ERVK -837 567 11 6 908 205 314 8 31 chr11 42429677 42429805 -79414051 + GA-rich Low_complexity Low_complexity 1 125 0 6 908 223 169 14 14 chr11 42429821 42429893 -79413963 + GA-rich Low_complexity Low_complexity 2 73 0 6 908 261 0 0 0 chr11 42430829 42430858 -79412998 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 908 21 0 0 0 chr11 42430875 42430896 -79412960 + AT_rich Low_complexity Low_complexity 1 21 0 6 908 372 22 0 0 chr11 42430916 42430961 -79412895 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 908 202 143 24 0 chr11 42431666 42431708 -79412148 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 908 489 163 0 0 chr11 42432466 42432558 -79411298 + GA-rich Low_complexity Low_complexity 3 94 0 6 908 493 371 17 0 chr11 42433080 42433255 -79410601 + MER5A DNA MER1_type 7 184 -5 6 908 29 60 0 0 chr11 42433575 42433625 -79410231 + AT_rich Low_complexity Low_complexity 1 50 0 6 908 238 304 19 29 chr11 42434141 42434246 -79409610 + GA-rich Low_complexity Low_complexity 4 107 0 6 908 31 0 0 0 chr11 42434434 42434465 -79409391 + AT_rich Low_complexity Low_complexity 1 31 0 6 908 201 220 0 33 chr11 42435037 42435098 -79408758 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 6 908 192 333 11 32 chr11 42435223 42435316 -79408540 - L2b LINE L2 0 3375 3285 6 908 312 317 40 27 chr11 42435515 42435664 -79408192 - Lx8 LINE L1 -62 7411 7261 6 908 816 273 56 75 chr11 42435876 42436197 -79407659 - Lx8 LINE L1 -224 7249 6935 6 908 830 169 0 7 chr11 42436983 42437126 -79406730 + B1_Mus2 SINE Alu 1 142 -5 6 908 22 0 0 0 chr11 42438917 42438939 -79404917 + AT_rich Low_complexity Low_complexity 1 22 0 6 908 700 248 19 6 chr11 42439014 42439172 -79404684 - B3 SINE B2 0 216 57 6 908 22 0 0 0 chr11 42439432 42439454 -79404402 + AT_rich Low_complexity Low_complexity 1 22 0 6 908 311 278 0 32 chr11 42439459 42439552 -79404304 + ID4 SINE ID 6 95 -57 6 908 201 74 0 0 chr11 42443517 42443544 -79400312 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6 908 211 316 13 0 chr11 42443806 42443882 -79399974 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 908 216 0 0 0 chr11 42444650 42444674 -79399182 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 908 186 191 0 0 chr11 42445085 42445127 -79398729 + A-rich Low_complexity Low_complexity 1 42 0 6 908 486 61 0 0 chr11 42447134 42447200 -79396656 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 908 393 62 47 0 chr11 42447555 42447619 -79396237 - Lx LINE L1 -274 6380 6314 6 908 1312 132 4 81 chr11 42447639 42447911 -79395945 + Lx LINE L1 6402 6652 -2 6 908 549 135 0 0 chr11 42447911 42448000 -79395856 + (GAA)n Simple_repeat Simple_repeat 1 89 0 6 908 501 17 0 0 chr11 42448620 42448678 -79395178 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 908 280 276 118 65 chr11 42448727 42448820 -79395036 + B4A SINE B4 187 284 -8 6 908 297 75 0 0 chr11 42448847 42448887 -79394969 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 908 261 0 0 0 chr11 42448887 42448916 -79394940 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 908 397 314 7 54 chr11 42449394 42449542 -79394314 - RSINE1 SINE B4 -21 144 4 6 908 731 142 0 26 chr11 42449829 42449981 -79393875 + CT-rich Low_complexity Low_complexity 4 151 0 6 908 450 0 0 0 chr11 42449992 42450042 -79393814 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 908 816 256 137 29 chr11 42450249 42450555 -79393301 + MTE2a LTR MaLR 5 343 -36 6 908 255 286 16 32 chr11 42450563 42450686 -79393170 + GA-rich Low_complexity Low_complexity 1 121 0 6 908 567 324 60 34 chr11 42451137 42451402 -79392454 - MLT2D LTR ERVL -4 410 139 6 908 345 47 0 0 chr11 42451414 42451457 -79392399 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 908 743 373 60 23 chr11 42451458 42451578 -79392278 - Lx9 LINE L1 -5 7468 7332 6 908 192 40 0 0 chr11 42451578 42451603 -79392253 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 908 1169 335 35 30 chr11 42451603 42452297 -79391559 - Lx9 LINE L1 -195 7449 6657 6 908 558 258 83 41 chr11 42452443 42452661 -79391195 - Lx9 LINE L1 -269 7375 7149 6 908 205 330 45 11 chr11 42453251 42453340 -79390516 + L2 LINE L2 2141 2232 -1187 6 908 29 0 0 0 chr11 42453498 42453527 -79390329 + AT_rich Low_complexity Low_complexity 1 29 0 6 908 987 275 117 25 chr11 42453594 42454038 -79389818 - Lx8 LINE L1 -221 7252 6768 6 908 1735 164 193 8 chr11 42454348 42454742 -79389114 + RLTR11A LTR ERVK 1 467 -61 6 908 23 0 0 0 chr11 42454880 42454903 -79388953 + AT_rich Low_complexity Low_complexity 1 23 0 6 908 1333 122 4 31 chr11 42454903 42455132 -79388724 - Lx2 LINE L1 0 6997 6775 6 908 4700 125 27 3 chr11 42455132 42455908 -79387948 - Lx2 LINE L1 -354 6643 5849 6 908 6346 31 11 0 chr11 42455924 42456689 -79387167 - L1Md_F3 LINE L1 -1 6583 5811 6 908 250 331 100 50 chr11 42457693 42457833 -79386023 + MER97c DNA MER1_type? 15 161 -929 6 908 230 343 71 43 chr11 42457963 42458173 -79385683 + MLT1K LTR MaLR 234 449 -146 6 908 3329 124 83 27 chr11 42460956 42461520 -79382336 - Lx LINE L1 -2 6652 6057 6 908 243 79 0 0 chr11 42461662 42461700 -79382156 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 908 27 0 0 0 chr11 42462738 42462765 -79381091 + AT_rich Low_complexity Low_complexity 1 27 0 6 908 736 215 20 34 chr11 42462765 42462914 -79380942 - B1_Mur4 SINE Alu -1 149 3 6 908 272 296 140 30 chr11 42463258 42463422 -79380434 + MLT1K LTR MaLR 369 550 -45 6 908 962 156 200 0 chr11 42464529 42464709 -79379147 - B3 SINE B2 0 216 1 6 908 537 305 23 20 chr11 42466275 42466579 -79377277 + L1MA8 LINE L1 5658 5962 -329 6 909 529 380 15 10 chr11 42467555 42467757 -79376099 - ORR1E LTR MaLR -4 355 153 6 909 310 343 43 92 chr11 42468098 42468403 -79375453 - L1MB8 LINE L1 -1 6177 5888 6 909 4310 43 11 0 chr11 42468572 42469104 -79374752 - L1Md_F3 LINE L1 -4 6580 6043 6 909 265 286 0 0 chr11 42469127 42469218 -79374638 - L1MB8 LINE L1 -823 5355 5265 6 909 645 194 77 8 chr11 42469231 42469361 -79374495 - B3 SINE B2 -71 145 7 6 909 378 295 86 24 chr11 42469365 42469657 -79374199 - L1MB8 LINE L1 -2577 3569 3260 6 909 222 120 53 53 chr11 42469662 42469776 -79374080 + (TTATA)n Simple_repeat Simple_repeat 3 116 0 7 909 1810 177 0 6 chr11 42470290 42470637 -79373219 - L1_Mur2 LINE L1 -648 5229 4885 7 909 1146 84 0 0 chr11 42470677 42470819 -79373037 + B1_Mus1 SINE Alu 2 143 -5 7 909 6487 120 31 38 chr11 42470825 42472233 -79371623 + Lx LINE L1 5288 6648 -6 7 909 1674 202 24 65 chr11 42472237 42472607 -79371249 + ORR1C1 LTR MaLR 16 370 -8 7 909 459 0 0 0 chr11 42473649 42473700 -79370156 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 909 990 252 112 22 chr11 42475332 42475644 -79368212 - MTEb LTR MaLR -4 375 36 7 909 220 312 69 39 chr11 42475859 42475989 -79367867 - MIRc SINE MIR -120 148 15 7 909 603 243 73 0 chr11 42476683 42476819 -79367037 + MTE2b LTR MaLR 159 304 -75 7 909 925 203 25 29 chr11 42476864 42477103 -79366753 - Lx5 LINE L1 -936 6114 5877 7 909 1419 158 59 17 chr11 42477104 42477394 -79366462 - ORR1A3 LTR MaLR -13 313 12 7 909 1231 114 9 19 chr11 42477400 42477614 -79366242 - Lx5 LINE L1 -1191 5859 5648 7 909 2152 169 16 5 chr11 42477612 42478039 -79365817 - L1_Mur2 LINE L1 -2929 2948 2517 7 909 422 36 0 18 chr11 42478325 42478382 -79365474 + (GAAAA)n Simple_repeat Simple_repeat 2 57 0 7 909 1085 309 48 50 chr11 42478386 42478842 -79365014 + RMER5 LTR ERV1 1 455 -79 7 909 212 111 0 22 chr11 42482521 42482567 -79361289 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 909 1288 70 0 0 chr11 42484880 42485051 -79358805 - L1Md_T LINE L1 0 6582 6412 7 909 2239 15 0 0 chr11 42485051 42485316 -79358540 - L1_Mm LINE L1 -73 5810 5546 7 909 3598 9 0 0 chr11 42485314 42485743 -79358113 + L1_Mm LINE L1 5105 5533 -350 7 909 508 314 111 46 chr11 42485842 42486125 -79357731 + B4 SINE B4 9 281 -11 7 909 423 52 0 0 chr11 42486321 42486379 -79357477 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 909 322 285 57 71 chr11 42487980 42488093 -79355763 - B1F1 SINE Alu -1 148 32 7 909 2197 177 5 27 chr11 42488093 42488505 -79355351 + MTB_Mm LTR MaLR 3 405 -2 7 909 322 285 57 71 chr11 42488505 42488531 -79355325 - B1F1 SINE Alu -118 31 11 7 909 631 238 85 99 chr11 42489027 42489228 -79354628 - B3A SINE B2 0 198 1 7 909 34 42 0 0 chr11 42489367 42489415 -79354441 + AT_rich Low_complexity Low_complexity 1 48 0 7 909 304 277 75 58 chr11 42489621 42489847 -79354009 + L1M3e LINE L1 45 274 -6756 7 909 554 323 47 31 chr11 42490812 42491301 -79352555 + L1M3e LINE L1 3178 3674 -3429 7 909 2853 96 25 2 chr11 42491307 42491703 -79352153 + MTB_Mm LTR MaLR 1 405 -2 7 909 5745 141 21 85 chr11 42491705 42492876 -79350980 + MTB_Mm-int LTR MaLR 1 1096 -2 7 909 3161 67 5 7 chr11 42492878 42493283 -79350573 + MTB_Mm LTR MaLR 1 404 -3 7 909 1589 154 40 23 chr11 42493286 42493489 -79350367 + MTB_Mm-int LTR MaLR 1 212 -886 7 909 1431 150 149 41 chr11 42493489 42493858 -79349998 + RLTR9E LTR ERVK 1 409 0 7 909 1589 154 40 23 chr11 42493858 42493954 -79349902 + MTB_Mm-int LTR MaLR 213 305 -793 7 909 2636 81 0 27 chr11 42494124 42494492 -79349364 - L1_Mus3 LINE L1 -12 6626 6269 7 909 479 115 0 0 chr11 42494497 42494575 -79349281 - L1_Mus3 LINE L1 -476 6162 6085 7 909 246 362 60 75 chr11 42494807 42495007 -79348849 + MLT1J1 LTR MaLR 1 197 -247 7 909 271 268 33 44 chr11 42495301 42495391 -79348465 + MTE2a LTR MaLR 278 366 -13 7 909 723 277 70 20 chr11 42496393 42496875 -79346981 - L1MA4 LINE L1 -113 6187 5642 7 909 510 288 85 34 chr11 42496910 42497213 -79346643 - L1MA4 LINE L1 -1163 4980 4677 7 909 9622 41 0 0 chr11 42497497 42499893 -79343963 + L1Md_Gf LINE L1 1 2406 -3480 7 909 816 39 0 0 chr11 42499897 42500000 -79343856 + L1Md_Gf LINE L1 2896 2998 -2888 7 909 22145 20 0 0 chr11 42500000 42502591 -79341265 + L1Md_T LINE L1 2996 5586 -297 1 909 8993 5 0 0 chr11 42502591 42503587 -79340269 + L1Md_T LINE L1 5587 6582 0 1 909 252 346 52 44 chr11 42504299 42504435 -79339421 + Charlie4z DNA MER1_type 30 166 -1 2 909 317 357 38 19 chr11 42506682 42506842 -79337014 - L1MC4 LINE L1 -791 7251 7089 3 909 574 296 27 97 chr11 42507128 42507427 -79336429 - B4A SINE B4 -14 278 1 4 909 252 86 0 0 chr11 42507894 42507929 -79335927 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5 909 477 0 0 0 chr11 42507978 42508031 -79335825 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 909 718 298 10 5 chr11 42508068 42508277 -79335579 + B3 SINE B2 1 210 -6 7 909 239 182 39 13 chr11 42508631 42508709 -79335147 + (TA)n Simple_repeat Simple_repeat 2 81 0 8 909 7323 80 35 1 chr11 42508776 42509768 -79334088 - L1_Mus4 LINE L1 -3 6633 5608 9 909 891 281 86 31 chr11 42510422 42510771 -79333085 - MLT1A LTR MaLR -3 371 4 1 909 16339 137 22 11 chr11 42510984 42514068 -79329788 - L1_Mus3 LINE L1 0 6638 3498 1 909 1881 136 85 77 chr11 42514068 42514458 -79329398 + RLTR9C LTR ERVK 1 393 0 1 909 16339 152 20 12 chr11 42514458 42515032 -79328824 - L1_Mus3 LINE L1 -2386 3497 2938 1 909 2551 189 98 40 chr11 42515019 42515613 -79328243 - L1VL2 LINE L1 -5646 689 62 1 909 589 255 90 12 chr11 42515631 42515798 -79328058 + MTC LTR MaLR 10 189 -232 1 909 198 258 65 0 chr11 42516257 42516319 -79327537 + L2a LINE L2 3200 3265 -161 1 909 792 311 57 0 chr11 42517223 42517467 -79326389 - Lx8 LINE L1 -175 7298 7041 1 909 21 71 0 0 chr11 42517697 42517739 -79326117 + AT_rich Low_complexity Low_complexity 1 42 0 1 909 23 54 0 0 chr11 42518588 42518625 -79325231 + AT_rich Low_complexity Low_complexity 1 37 0 1 909 180 0 0 0 chr11 42519107 42519127 -79324729 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 909 1084 92 0 0 chr11 42519128 42519269 -79324587 - B1_Mus2 SINE Alu -6 141 1 2 909 495 292 89 82 chr11 42519403 42519725 -79324131 - L1ME2 LINE L1 -141 6038 5706 2 909 798 235 0 13 chr11 42519725 42519876 -79323980 + B1_Mur2 SINE Alu 1 149 0 2 909 495 311 67 29 chr11 42519876 42519976 -79323880 - L1ME2 LINE L1 -451 5713 5611 2 909 593 365 147 3 chr11 42520227 42520581 -79323275 - Lx8 LINE L1 -244 7229 6825 2 909 10583 58 1 0 chr11 42520583 42521922 -79321934 + L1Md_F2 LINE L1 4246 5586 -297 2 909 7613 62 4 2 chr11 42521923 42522916 -79320940 + L1Md_F2 LINE L1 5588 6582 0 2 909 207 0 0 0 chr11 42522926 42522949 -79320907 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 909 617 321 26 0 chr11 42522949 42523139 -79320717 - Lx8 LINE L1 -683 6790 6596 2 909 319 325 68 65 chr11 42523327 42523383 -79320473 - L1M4 LINE L1 -785 5361 5310 2 909 1118 64 14 0 chr11 42523383 42523523 -79320333 + B1_Mus1 SINE Alu 2 143 -5 2 909 319 325 68 65 chr11 42523523 42523818 -79320038 - L1M4 LINE L1 -837 5309 5009 2 909 319 292 7 7 chr11 42524107 42524244 -79319612 - L1M4 LINE L1 -2515 3631 3493 2 909 492 18 0 0 chr11 42525093 42525150 -79318706 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 909 189 0 0 0 chr11 42525269 42525290 -79318566 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 909 22 80 0 0 chr11 42525378 42525428 -79318428 + AT_rich Low_complexity Low_complexity 1 50 0 3 909 22 0 0 0 chr11 42525904 42525926 -79317930 + AT_rich Low_complexity Low_complexity 1 22 0 3 909 1108 88 7 0 chr11 42525963 42526110 -79317746 + B1_Mus1 SINE Alu 1 148 0 3 909 741 108 0 37 chr11 42526247 42526382 -79317474 - Lx LINE L1 -1 6653 6524 3 909 5874 117 14 27 chr11 42526830 42527752 -79316104 - Lx LINE L1 0 6654 5745 3 909 11658 152 9 8 chr11 42527752 42529744 -79314112 + Lx LINE L1 3726 5720 -163 3 909 237 222 171 12 chr11 42530951 42531033 -79312823 + Lx8 LINE L1 7358 7452 -21 3 909 236 336 0 89 chr11 42531229 42531353 -79312503 + MER5A1 DNA MER1_type 35 147 -19 3 909 638 134 18 0 chr11 42532576 42532688 -79311168 + CT-rich Low_complexity Low_complexity 4 117 0 3 909 16508 149 26 36 chr11 42532732 42536670 -79307186 - Lx4A LINE L1 -9 7049 3053 3 909 2383 61 23 0 chr11 42536670 42536980 -79306876 - L1_Mus1 LINE L1 -3 6564 6248 3 909 15748 207 28 118 chr11 42536980 42539567 -79304289 - Lx4A LINE L1 -2811 3075 957 3 909 198 0 0 0 chr11 42539567 42539589 -79304267 + (TAA)n Simple_repeat Simple_repeat 3 24 0 4 909 4278 176 39 65 chr11 42539589 42540129 -79303727 - Lx4A LINE L1 -6130 956 471 3 909 252 0 0 0 chr11 42540290 42540318 -79303538 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 4 909 14361 137 33 15 chr11 42541018 42542411 -79301445 - Lx LINE L1 0 6654 5037 4 909 5908 79 18 0 chr11 42542411 42543205 -79300651 - L1_Mus1 LINE L1 -2 6565 5758 4 909 14361 170 152 6 chr11 42543205 42544572 -79299284 - Lx LINE L1 -850 5036 3482 4 909 285 75 0 0 chr11 42544572 42544612 -79299244 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 909 14361 170 152 6 chr11 42544612 42545112 -79298744 - Lx LINE L1 -2405 3481 2964 4 909 3525 20 0 0 chr11 42545112 42545517 -79298339 - L1Md_A LINE L1 -1 6581 6177 4 909 14361 170 152 6 chr11 42545517 42546184 -79297672 - Lx LINE L1 -2923 2963 2290 4 909 2142 225 6 31 chr11 42546182 42546663 -79297193 - Lx2B LINE L1 -28 6972 6504 4 909 988 241 5 5 chr11 42546787 42546987 -79296869 + B3 SINE B2 14 213 -3 4 909 220 390 12 12 chr11 42548411 42548494 -79295362 - MER5B DNA MER1_type -59 119 37 4 909 464 322 117 13 chr11 42549399 42549553 -79294303 - MTEb LTR MaLR -209 170 1 4 909 3970 234 85 30 chr11 42550409 42552010 -79291846 - Lx6 LINE L1 -582 6878 5183 5 909 31 68 0 0 chr11 42552270 42552329 -79291527 + AT_rich Low_complexity Low_complexity 1 59 0 5 909 306 272 21 42 chr11 42552876 42552972 -79290884 - L2a LINE L2 -15 3411 3318 5 909 1038 221 39 0 chr11 42553136 42553340 -79290516 + B3 SINE B2 3 214 -2 5 909 885 309 46 35 chr11 42553389 42553671 -79290185 + RCHARR1 DNA MER1_type 14 298 -676 5 909 438 227 54 9 chr11 42553671 42553782 -79290074 + RCHARR1 DNA MER1_type 859 974 0 5 909 277 379 82 72 chr11 42555149 42555652 -79288204 - L2a LINE L2 0 3426 2919 5 909 214 302 106 62 chr11 42555876 42555989 -79287867 - L2c LINE L2 -1 3386 3269 5 909 879 252 24 14 chr11 42556703 42556916 -79286940 - B3 SINE B2 0 216 2 5 909 383 311 75 51 chr11 42557223 42557518 -79286338 + L1MEf LINE L1 1674 1975 -4225 5 909 1147 49 0 0 chr11 42557579 42557721 -79286135 + B1_Mus1 SINE Alu 1 142 -6 5 909 243 0 0 0 chr11 42557723 42557750 -79286106 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 909 350 272 111 61 chr11 42558886 42559066 -79284790 - B3A SINE B2 -9 189 1 6 909 3132 90 59 19 chr11 42559619 42560096 -79283760 + Lx2 LINE L1 6502 6997 0 6 909 357 291 112 81 chr11 42561070 42561931 -79281925 + L1MEf LINE L1 955 1841 -4359 6 909 949 346 7 3 chr11 42562018 42562302 -79281554 + B4A SINE B4 2 286 -6 6 909 1034 279 37 92 chr11 42562743 42563122 -79280734 - MTEa LTR MaLR -4 375 18 6 909 2164 94 38 24 chr11 42563151 42563169 -79280687 - Lx LINE L1 0 6654 6643 6 909 207 0 0 0 chr11 42563169 42563192 -79280664 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 909 2164 94 38 24 chr11 42563192 42563512 -79280344 - Lx LINE L1 -12 6642 6311 6 909 21 0 0 0 chr11 42564551 42564572 -79279284 + AT_rich Low_complexity Low_complexity 1 21 0 6 909 621 307 60 65 chr11 42564822 42565297 -79278559 + RMER13A LTR ERVK 32 607 -301 6 909 198 0 0 0 chr11 42565297 42565319 -79278537 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 7 909 270 313 103 94 chr11 42565319 42565396 -79278460 + RMER13A LTR ERVK 608 681 -227 6 909 6886 31 2 0 chr11 42565807 42566622 -79277234 + L1Md_F3 LINE L1 5752 6568 -16 7 909 2110 46 4 0 chr11 42566691 42566952 -79276904 - L1Md_F2 LINE L1 0 6582 6321 7 909 4552 29 2 0 chr11 42566952 42567510 -79276346 + L1Md_F2 LINE L1 5737 6295 -287 7 909 289 333 75 9 chr11 42567582 42567688 -79276168 + L2b LINE L2 3263 3375 0 7 909 857 141 20 20 chr11 42567875 42568027 -79275829 + URR1A DNA MER1_type 47 198 -28 7 909 1786 233 96 33 chr11 42570635 42571024 -79272832 + RLTR16 LTR ERVK 8 401 -104 7 909 579 40 0 0 chr11 42571024 42571098 -79272758 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 909 1786 230 98 32 chr11 42571098 42571188 -79272668 + RLTR16 LTR ERVK 402 504 -1 7 909 375 41 0 0 chr11 42571578 42571627 -79272229 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 909 564 102 0 0 chr11 42571627 42571725 -79272131 + (GA)n Simple_repeat Simple_repeat 1 98 0 7 909 6106 94 5 0 chr11 42572420 42573296 -79270560 - L1_Mus3 LINE L1 -34 6604 5725 7 909 1369 275 62 31 chr11 42573296 42573784 -79270072 - RMER5 LTR ERV1 -19 515 13 8 909 7301 37 4 4 chr11 42574674 42575596 -79268260 - L1Md_F3 LINE L1 -1 6583 5662 8 909 8328 131 21 9 chr11 42575595 42576998 -79266858 + L1_Mm LINE L1 4331 5749 -134 8 909 721 103 17 0 chr11 42577504 42577621 -79266235 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 8 909 5343 128 73 8 chr11 42577716 42578615 -79265241 - RMER17B LTR ERVK 0 958 1 8 909 393 22 0 0 chr11 42578629 42578675 -79265181 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 909 4481 15 0 0 chr11 42580709 42581241 -79262615 - L1Md_A LINE L1 -185 5698 5167 8 909 7907 21 0 2 chr11 42581241 42582151 -79261705 + L1Md_A LINE L1 5675 6582 0 8 909 225 0 0 0 chr11 42582521 42582546 -79261310 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 909 1564 178 66 50 chr11 42582597 42582975 -79260881 - ORR1C2 LTR MaLR 0 384 1 8 909 229 287 56 152 chr11 42584022 42584205 -79259651 + MIR SINE MIR 28 218 -50 8 909 294 367 0 0 chr11 42584348 42584457 -79259399 + C-rich Low_complexity Low_complexity 3 111 0 9 909 6060 88 28 13 chr11 42584531 42585467 -79258389 - Lx3_Mus LINE L1 -271 6738 5789 9 909 215 114 0 22 chr11 42585572 42585617 -79258239 + (TATG)n Simple_repeat Simple_repeat 2 45 0 9 909 612 234 99 25 chr11 42586031 42586233 -79257623 - Lx9 LINE L1 -1106 6538 6322 9 909 208 204 36 18 chr11 42586233 42586288 -79257568 + (CATA)n Simple_repeat Simple_repeat 2 57 0 9 909 1175 243 167 64 chr11 42586498 42587043 -79256813 - MT2B LTR ERVL 0 601 1 9 909 360 0 0 0 chr11 42587130 42587170 -79256686 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 909 252 0 0 0 chr11 42589792 42589820 -79254036 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 9 909 456 58 0 14 chr11 42589820 42589890 -79253966 + L1_Mus3 LINE L1 6564 6632 -6 9 909 875 277 10 15 chr11 42590457 42590655 -79253201 - B3A SINE B2 -1 197 1 9 909 691 317 56 40 chr11 42590664 42591094 -79252762 + L1M2 LINE L1 3730 4166 -1977 1 909 300 276 23 121 chr11 42591209 42591341 -79252515 - PB1D7 SINE Alu -1 119 1 1 909 468 267 12 136 chr11 42591341 42591440 -79252416 - ID SINE ID -142 82 5 1 909 300 257 133 35 chr11 42591771 42591884 -79251972 + B3 SINE B2 1 124 -92 1 909 2125 179 63 30 chr11 42591884 42592378 -79251478 + RLTR31_Mm LTR ERVK 1 587 -105 1 909 696 212 9 121 chr11 42592388 42592603 -79251253 + RLTR31_Mm LTR ERVK 371 561 0 1 909 24 32 0 0 chr11 42592679 42592710 -79251146 + AT_rich Low_complexity Low_complexity 1 31 0 1 909 33911 35 0 0 chr11 42592713 42597947 -79245909 + L1Md_T LINE L1 259 5589 -297 1 113 9006 7 0 0 chr11 42597947 42598942 -79244914 + L1Md_T LINE L1 5590 6584 -1 1 910 1151 265 10 18 chr11 42598942 42598983 -79244873 + L1MC LINE L1 5616 5654 -679 1 910 742 227 85 66 chr11 42599514 42599877 -79243979 + MT2B LTR ERVL 54 465 -136 1 910 216 257 0 51 chr11 42601233 42601284 -79242572 + A-rich Low_complexity Low_complexity 1 49 0 1 910 1201 48 0 7 chr11 42601284 42601432 -79242424 + B1_Mm SINE Alu 1 147 0 1 910 216 257 0 51 chr11 42601432 42601458 -79242398 + A-rich Low_complexity Low_complexity 50 74 0 1 910 270 0 0 0 chr11 42601632 42601662 -79242194 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 910 349 298 17 17 chr11 42601796 42601912 -79241944 - PB1D10 SINE Alu -1 116 1 1 910 274 346 28 9 chr11 42601914 42602022 -79241834 - MLT1K LTR MaLR -62 533 424 1 910 272 387 169 9 chr11 42602274 42602741 -79241115 - L2 LINE L2 -338 3081 2540 1 910 2911 71 26 7 chr11 42603241 42603669 -79240187 - Lx3_Mus LINE L1 -503 6506 6071 1 910 3618 87 4 16 chr11 42603670 42604170 -79239686 + Lx3_Mus LINE L1 6516 7009 0 1 910 206 143 95 0 chr11 42604439 42604481 -79239375 - L4 LINE RTE -635 1394 1349 1 910 322 310 0 0 chr11 42604606 42604677 -79239179 + B4A SINE B4 2 72 -220 1 910 246 32 0 0 chr11 42604837 42604868 -79238988 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 910 243 0 0 0 chr11 42604868 42604894 -79238962 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 910 21 36 0 0 chr11 42605372 42605400 -79238456 + AT_rich Low_complexity Low_complexity 1 28 0 1 910 3085 45 39 3 chr11 42606510 42606892 -79236964 - MTA_Mm LTR MaLR 0 396 1 1 910 319 302 233 8 chr11 42607043 42607283 -79236573 + MLT2B4 LTR ERVL 1 294 -262 1 910 636 238 28 0 chr11 42607691 42607834 -79236022 + B1_Mur2 SINE Alu 2 148 -1 1 910 2790 78 15 8 chr11 42608141 42608542 -79235314 + L1_Mus4 LINE L1 6230 6633 -3 1 910 224 244 13 93 chr11 42609312 42609398 -79234458 - L2b LINE L2 -70 3317 3239 1 910 251 254 0 0 chr11 42609520 42609575 -79234281 + PB1D10 SINE Alu 23 77 -40 1 910 470 316 73 14 chr11 42609619 42609963 -79233893 - L1MD LINE L1 -346 5818 5455 1 910 230 195 83 10 chr11 42610030 42610127 -79233729 - L1MD LINE L1 -834 5312 5210 1 910 1343 270 33 6 chr11 42610127 42610462 -79233394 - ORR1D1 LTR MaLR -5 369 26 1 910 848 270 103 30 chr11 42610571 42610873 -79232983 - ORR1D2 LTR MaLR -42 328 5 1 910 3621 15 0 0 chr11 42611681 42612093 -79231763 - L1Md_A LINE L1 -1 6581 6170 1 910 241 330 43 11 chr11 42613370 42613462 -79230394 + LTR79 LTR ERVL 69 163 -364 1 910 27 87 0 0 chr11 42613755 42613824 -79230032 + AT_rich Low_complexity Low_complexity 1 69 0 1 910 402 21 0 0 chr11 42613924 42613971 -79229885 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 910 712 270 121 11 chr11 42615480 42615753 -79228103 - RMER15 LTR ERVL 0 575 273 1 910 7531 66 0 6 chr11 42616111 42617441 -79226415 - L1Md_F2 LINE L1 0 6582 5291 1 910 609 339 89 62 chr11 42618549 42619068 -79224788 - MT2A LTR ERVL 0 533 1 1 910 2085 117 7 0 chr11 42619651 42619959 -79223897 + ORR1A2 LTR MaLR 18 327 0 1 910 626 271 79 39 chr11 42620023 42620277 -79223579 + L1MA7 LINE L1 6008 6271 -20 1 910 1946 178 42 34 chr11 42621425 42621804 -79222052 + ORR1B1 LTR MaLR 13 394 0 1 910 273 351 43 9 chr11 42621804 42621919 -79221937 - LTR16E1 LTR ERVL -167 371 253 1 910 353 323 61 30 chr11 42622409 42622540 -79221316 - MIRc SINE MIR -111 157 23 1 910 214 276 0 17 chr11 42623205 42623264 -79220592 + CT-rich Low_complexity Low_complexity 1 58 0 1 910 1090 271 145 53 chr11 42623264 42623754 -79220102 - Lx8 LINE L1 -50 7423 6889 1 910 37 23 0 0 chr11 42623826 42623870 -79219986 + AT_rich Low_complexity Low_complexity 1 44 0 1 910 256 319 14 0 chr11 42624062 42624131 -79219725 - ID4_ SINE ID 0 83 14 1 910 344 340 61 65 chr11 42625041 42625400 -79218456 + MTEa LTR MaLR 2 379 0 1 910 557 266 22 65 chr11 42625497 42625726 -79218130 - L1MB1 LINE L1 -123 6045 5827 1 910 573 15 0 0 chr11 42625726 42625792 -79218064 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 910 980 53 89 15 chr11 42625793 42625928 -79217928 - B1_Mm SINE Alu -2 145 1 1 910 399 324 16 21 chr11 42625966 42626152 -79217704 + L1M3 LINE L1 5629 5813 -355 1 910 238 394 40 10 chr11 42626211 42626411 -79217445 + MER102a DNA MER1_type 70 275 -55 1 910 331 354 44 0 chr11 42626652 42626765 -79217091 + L2a LINE L2 3302 3419 -7 1 910 183 284 72 29 chr11 42627001 42627070 -79216786 + MIRb SINE MIR 155 226 -42 1 910 305 148 33 0 chr11 42627845 42627906 -79215950 + CT-rich Low_complexity Low_complexity 4 66 0 1 910 1068 224 14 0 chr11 42627935 42628158 -79215698 + ORR1A4 LTR MaLR 96 321 -8 1 910 3473 207 57 75 chr11 42628250 42629225 -79214631 - RMER17B LTR ERVK 0 958 1 1 910 340 345 118 15 chr11 42629801 42630072 -79213784 - L1MC4a LINE L1 -1948 5934 5636 1 910 1386 76 0 0 chr11 42630242 42630427 -79213429 - L1_Mus1 LINE L1 0 6567 6383 1 910 2021 182 27 32 chr11 42630445 42630854 -79213002 + MTB_Mm LTR MaLR 1 407 0 1 910 24 53 0 0 chr11 42630882 42630920 -79212936 + AT_rich Low_complexity Low_complexity 1 38 0 1 910 736 255 18 12 chr11 42632489 42632656 -79211200 + B3 SINE B2 38 205 -11 1 910 333 0 0 0 chr11 42632979 42633016 -79210840 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 910 887 327 19 8 chr11 42633696 42633955 -79209901 + B4A SINE B4 1 262 -30 1 910 459 0 0 0 chr11 42633985 42634036 -79209820 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 910 236 299 205 31 chr11 42634699 42634923 -79208933 + MER121 Unknown Unknown 50 312 -100 1 910 507 252 86 29 chr11 42635503 42635642 -79208214 - B1F SINE Alu -1 148 2 1 910 391 338 0 55 chr11 42635642 42635666 -79208190 - ID_B1 SINE B4 -1 223 70 1 910 194 59 88 0 chr11 42635859 42635893 -79207963 + (TAATG)n Simple_repeat Simple_repeat 4 40 0 1 910 1286 113 0 21 chr11 42637111 42637301 -79206555 - B2_Mm2 SINE B2 -9 186 1 1 910 21 36 0 0 chr11 42637364 42637392 -79206464 + AT_rich Low_complexity Low_complexity 1 28 0 1 910 1489 267 17 17 chr11 42637441 42637856 -79206000 + Lx7 LINE L1 6893 7307 -389 1 910 333 0 0 0 chr11 42638470 42638507 -79205349 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 910 1355 233 118 20 chr11 42638572 42638813 -79205043 + RMER4B LTR ERVK 1 276 -309 1 910 225 0 0 0 chr11 42638813 42638838 -79205018 + (TGG)n Simple_repeat Simple_repeat 1 25 0 1 910 1355 231 257 31 chr11 42638838 42639058 -79204798 + RMER4B LTR ERVK 277 540 -45 1 910 3445 30 0 0 chr11 42639058 42639454 -79204402 + MTA_Mm LTR MaLR 1 396 0 1 910 391 223 30 60 chr11 42639454 42639491 -79204365 + RMER4B LTR ERVK 541 572 -13 1 910 450 269 65 118 chr11 42641512 42641681 -79202175 + RSINE1 SINE B4 6 165 0 1 910 486 362 138 7 chr11 42641732 42642144 -79201712 + Lx8 LINE L1 6788 7253 -220 1 910 32 26 0 0 chr11 42642316 42642355 -79201501 + AT_rich Low_complexity Low_complexity 1 39 0 1 910 349 282 238 32 chr11 42642380 42642587 -79201269 - L1MC3 LINE L1 -33 7752 7495 1 910 738 200 14 29 chr11 42642587 42642726 -79201130 - B1_Mur2 SINE Alu -10 139 3 1 910 349 282 238 32 chr11 42642726 42642790 -79201066 - L1MC3 LINE L1 -291 7494 7425 1 910 672 13 0 0 chr11 42642790 42642867 -79200989 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 1 910 349 282 238 32 chr11 42642867 42642905 -79200951 - L1MC3 LINE L1 -361 7424 7378 1 910 456 19 0 0 chr11 42642916 42642969 -79200887 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 910 661 301 88 77 chr11 42643037 42643700 -79200156 - L1MC3 LINE L1 -394 7391 6722 1 910 3249 46 0 18 chr11 42643700 42644101 -79199755 + L1_Mus1 LINE L1 6174 6567 0 1 910 661 301 88 77 chr11 42644101 42644239 -79199617 - L1MC3 LINE L1 -1064 6721 6581 1 910 743 178 12 229 chr11 42644417 42644474 -79199382 - RMER1C Other Other -14 1328 1285 1 910 3038 26 0 0 chr11 42644474 42644820 -79199036 + ORR1A0 LTR MaLR 1 346 0 1 910 743 175 15 264 chr11 42644820 42645107 -79198749 - RMER1C Other Other -58 1284 1078 1 910 483 237 26 9 chr11 42646344 42646459 -79197397 + PB1D7 SINE Alu 1 117 -3 1 910 432 55 0 0 chr11 42646479 42646534 -79197322 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 910 383 272 16 3 chr11 42646547 42646746 -79197110 + (CA)n Simple_repeat Simple_repeat 1 201 0 1 910 276 30 0 0 chr11 42646746 42646779 -79197077 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 910 383 246 0 6 chr11 42646779 42646847 -79197009 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 910 261 292 0 0 chr11 42646943 42647097 -79196759 + (CA)n Simple_repeat Simple_repeat 2 155 0 1 910 192 143 0 0 chr11 42647125 42647167 -79196689 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 910 321 68 0 0 chr11 42648304 42648348 -79195508 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 910 1231 197 57 173 chr11 42649960 42650383 -79193473 - ORR1D1 LTR MaLR 0 374 1 1 910 490 315 7 46 chr11 42650652 42650805 -79193051 - RSINE1 SINE B4 -15 150 4 1 910 351 343 62 6 chr11 42651152 42651328 -79192528 - L2 LINE L2 -630 2789 2604 1 910 1627 114 0 0 chr11 42651463 42651699 -79192157 + L1_Mus1 LINE L1 5874 6109 -458 1 910 1316 61 11 11 chr11 42651699 42651882 -79191974 + L1_Mus1 LINE L1 6384 6566 -1 1 910 259 294 123 47 chr11 42651927 42652098 -79191758 - L1MC1 LINE L1 -2274 5768 5585 1 910 605 298 91 41 chr11 42652082 42652544 -79191312 + L1MC1 LINE L1 5843 6327 -6 1 910 450 0 0 0 chr11 42652547 42652597 -79191259 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 910 252 283 91 0 chr11 42652631 42652730 -79191126 - MIRb SINE MIR -53 215 108 2 910 328 355 53 18 chr11 42652891 42653060 -79190796 - MIRc SINE MIR 0 268 94 2 910 1705 194 61 212 chr11 42653822 42654291 -79189565 + RMER1C Other Other 757 1123 -219 2 910 396 0 0 0 chr11 42654291 42654335 -79189521 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 910 1705 194 61 212 chr11 42654335 42654550 -79189306 + RMER1C Other Other 1124 1337 -5 2 910 270 319 53 0 chr11 42655399 42655509 -79188347 + MIRb SINE MIR 112 233 -35 2 910 357 24 0 0 chr11 42656046 42656088 -79187768 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 910 819 53 0 0 chr11 42656088 42656200 -79187656 + (GA)n Simple_repeat Simple_repeat 2 114 0 2 910 314 200 67 0 chr11 42656225 42656285 -79187571 - B3 SINE B2 -152 64 1 2 910 285 29 0 0 chr11 42656531 42656565 -79187291 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 910 636 264 63 0 chr11 42656753 42656912 -79186944 + B3 SINE B2 40 208 -8 2 910 565 319 104 55 chr11 42658242 42659065 -79184791 - L1M4b LINE L1 -5256 2078 1215 2 910 277 277 0 0 chr11 42659068 42659133 -79184723 + CT-rich Low_complexity Low_complexity 3 67 0 2 910 3325 46 3 0 chr11 42660137 42660529 -79183327 + MTA_Mm LTR MaLR 1 393 -3 2 910 1117 76 7 0 chr11 42660530 42660675 -79183181 + B1_Mm SINE Alu 2 147 0 2 910 267 113 28 14 chr11 42660677 42660749 -79183107 + A-rich Low_complexity Low_complexity 4 76 0 2 910 4705 32 0 5 chr11 42661462 42662025 -79181831 + L1Md_F3 LINE L1 6023 6582 -2 2 910 2871 169 47 32 chr11 42662124 42662213 -79181643 - RLTR20A LTR ERVK 0 541 455 2 910 426 53 0 0 chr11 42662213 42662270 -79181586 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 910 2871 169 47 32 chr11 42662270 42662543 -79181313 - RLTR20A LTR ERVK -87 454 175 2 910 288 0 0 0 chr11 42662543 42662575 -79181281 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 910 2871 169 47 32 chr11 42662575 42662744 -79181112 - RLTR20A LTR ERVK -367 174 4 2 910 262 401 65 7 chr11 42663451 42663604 -79180252 - MER54A LTR ERVL -485 416 255 2 910 495 0 0 0 chr11 42663784 42663839 -79180017 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 910 829 202 136 0 chr11 42664339 42664537 -79179319 + URR1A DNA MER1_type 1 225 -1 2 910 578 71 0 12 chr11 42664554 42664639 -79179217 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 2 910 365 328 60 65 chr11 42665338 42665553 -79178303 - MLT1H1 LTR MaLR -7 548 335 2 910 272 330 9 28 chr11 42665551 42665657 -79178199 - MLT1A1 LTR MaLR -4 404 301 2 910 261 362 96 36 chr11 42665947 42666113 -79177743 - MLT1A1 LTR MaLR -211 344 169 2 910 280 350 97 16 chr11 42666500 42666686 -79177170 + MIR SINE MIR 51 251 -11 2 910 1199 68 0 0 chr11 42667273 42667421 -79176435 + B1_Mus1 SINE Alu 1 148 0 2 910 598 298 7 0 chr11 42668626 42668767 -79175089 - MTEb LTR MaLR -233 146 5 2 910 4834 80 1 3 chr11 42669178 42669831 -79174025 - L1_Mus1 LINE L1 0 6567 5916 2 910 334 179 73 15 chr11 42669838 42669906 -79173950 - RSINE1 SINE B4 -37 128 57 2 910 22 35 0 0 chr11 42670283 42670312 -79173544 + AT_rich Low_complexity Low_complexity 1 29 0 2 910 288 0 0 0 chr11 42670485 42670517 -79173339 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 910 643 321 47 81 chr11 42671712 42672010 -79171846 + B4A SINE B4 1 288 -4 2 910 188 270 103 55 chr11 42672833 42672978 -79170878 - MER5B DNA MER1_type -20 158 7 2 910 225 287 207 0 chr11 42672983 42673070 -79170786 + MIRb SINE MIR 107 211 -57 2 910 5247 85 14 31 chr11 42673711 42674473 -79169383 - L1_Mus3 LINE L1 -3 6635 5887 2 910 4435 69 0 0 chr11 42674595 42675186 -79168670 + L1_Mm LINE L1 5291 5881 -2 2 910 248 0 31 0 chr11 42675208 42675240 -79168616 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 2 910 191 310 90 30 chr11 42675273 42675406 -79168450 - MIRc SINE MIR -24 244 104 2 910 545 252 242 5 chr11 42675621 42675840 -79168016 - B4 SINE B4 -18 274 4 2 910 432 0 0 0 chr11 42675998 42676046 -79167810 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 910 531 0 0 0 chr11 42677291 42677350 -79166506 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 910 1811 278 6 31 chr11 42677711 42678230 -79165626 + Lx5 LINE L1 6540 7045 -5 2 910 313 268 17 59 chr11 42678585 42678704 -79165152 - PB1D10 SINE Alu -3 114 1 2 910 2096 255 110 22 chr11 42678732 42679473 -79164383 - Lx6 LINE L1 -74 7386 6594 2 910 7656 43 9 10 chr11 42679675 42681314 -79162542 - L1Md_F2 LINE L1 0 6582 4939 2 910 5738 55 1 0 chr11 42681313 42682070 -79161786 + L1Md_F2 LINE L1 4176 4933 -950 2 910 463 181 507 7 chr11 42682070 42682210 -79161646 - URR1B DNA MER1_type -15 210 1 2 910 192 97 0 0 chr11 42682233 42682264 -79161592 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 910 441 0 0 0 chr11 42682265 42682314 -79161542 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 910 300 70 0 0 chr11 42682314 42682356 -79161500 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 910 518 274 40 16 chr11 42683566 42683692 -79160164 + ID_B1 SINE B4 79 207 -17 2 910 3995 84 11 7 chr11 42683694 42684255 -79159601 + L1_Mus3 LINE L1 6075 6637 -1 2 910 736 258 74 85 chr11 42684496 42684767 -79159089 + MamRep137 DNA TcMar? 24 291 -153 2 910 574 296 62 31 chr11 42684821 42685013 -79158843 - ORR1E LTR MaLR -4 355 158 2 910 208 333 117 11 chr11 42685366 42685460 -79158396 + MIR SINE MIR 50 153 -55 2 910 271 269 99 0 chr11 42685553 42685660 -79158196 + BC1_Mm scRNA scRNA 2 118 -34 2 910 253 350 9 19 chr11 42685681 42685786 -79158070 + C-rich Low_complexity Low_complexity 4 107 0 2 910 192 158 0 0 chr11 42686073 42686111 -79157745 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 2 910 385 290 70 89 chr11 42686466 42686593 -79157263 + B3A SINE B2 40 175 -41 2 910 540 0 0 0 chr11 42686593 42686653 -79157203 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 910 387 60 0 0 chr11 42686653 42686702 -79157154 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 910 316 289 70 101 chr11 42686702 42686749 -79157107 + B3 SINE B2 176 211 -5 2 910 252 0 0 0 chr11 42687961 42687989 -79155867 + (A)n Simple_repeat Simple_repeat 1 28 0 2 910 955 299 87 32 chr11 42688529 42689161 -79154695 - L1MB1 LINE L1 -29 6160 5494 2 910 419 356 52 29 chr11 42689188 42689324 -79154532 + RSINE1 SINE B4 6 144 -21 2 910 300 111 0 0 chr11 42689332 42689377 -79154479 + (TAA)n Simple_repeat Simple_repeat 2 46 0 2 910 276 197 49 62 chr11 42689408 42689489 -79154367 - L1M3 LINE L1 -855 5457 5378 2 910 506 291 29 32 chr11 42689547 42689575 -79154281 - L1M3 LINE L1 -840 5300 5274 2 910 602 281 70 0 chr11 42689575 42689774 -79154082 + B3 SINE B2 1 213 -3 2 910 506 291 29 32 chr11 42689774 42690061 -79153795 - L1M3 LINE L1 -867 5273 4986 2 910 548 261 147 59 chr11 42690073 42690291 -79153565 + L1M3 LINE L1 4034 4277 -1863 2 910 414 57 0 0 chr11 42690291 42690344 -79153512 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 910 548 261 147 59 chr11 42690344 42690630 -79153226 + L1M3 LINE L1 4278 4581 -1559 2 910 499 268 48 16 chr11 42690633 42690758 -79153098 + ETnERV2-int LTR ERVK 7074 7202 -204 2 910 231 333 127 0 chr11 42691362 42691512 -79152344 + L1M3 LINE L1 4760 4928 -1212 2 910 293 336 94 24 chr11 42692048 42692261 -79151595 - MIR SINE MIR -24 238 11 2 910 433 329 46 33 chr11 42693677 42693828 -79150028 + MER58A DNA MER1_type 72 224 0 2 910 1121 226 224 61 chr11 42695281 42695334 -79148522 - RLTR20B3 LTR ERVK -42 535 473 2 910 522 0 0 0 chr11 42695334 42695392 -79148464 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 910 1121 226 224 61 chr11 42695392 42695781 -79148075 - RLTR20B3 LTR ERVK -105 472 22 2 910 188 406 96 62 chr11 42697017 42697466 -79146390 - L2a LINE L2 -6 3420 2957 2 910 2427 61 0 0 chr11 42699311 42699624 -79144232 - L1_Mus1 LINE L1 -659 5908 5596 2 910 5309 65 0 10 chr11 42699624 42700304 -79143552 + L1_Mus1 LINE L1 5895 6567 0 2 910 258 253 132 14 chr11 42700850 42701070 -79142786 + L1Md_F2 LINE L1 1428 1673 -5661 2 910 999 129 0 0 chr11 42701191 42701331 -79142525 + B1_Mus2 SINE Alu 3 142 -5 2 910 304 200 10 21 chr11 42701360 42701457 -79142399 + Lx9 LINE L1 7532 7627 -17 2 910 453 349 56 30 chr11 42701459 42701728 -79142128 + L1Md_F2 LINE L1 1813 2088 -5014 2 910 281 251 107 11 chr11 42701898 42702075 -79141781 + L1Md_F2 LINE L1 2281 2474 -4860 2 910 1392 52 2 0 chr11 42702163 42702350 -79141506 + L1Md_F2 LINE L1 6281 6467 -566 2 910 8143 47 2 0 chr11 42702350 42703342 -79140514 + L1Md_F2 LINE L1 6447 7440 -2 2 910 23 0 0 0 chr11 42703385 42703408 -79140448 + AT_rich Low_complexity Low_complexity 1 23 0 2 910 456 313 30 0 chr11 42703684 42703815 -79140041 + ID_B1 SINE B4 90 224 0 2 910 830 200 144 10 chr11 42703962 42704164 -79139692 - ORR1D1 LTR MaLR -145 229 1 2 910 424 292 111 24 chr11 42704345 42704888 -79138968 + L1M4 LINE L1 2143 2732 -3414 2 910 445 264 32 47 chr11 42704955 42705293 -79138563 + L1M4 LINE L1 2821 3153 -2993 2 910 288 0 0 0 chr11 42705568 42705600 -79138256 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 910 297 0 0 0 chr11 42705603 42705636 -79138220 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 910 792 213 51 41 chr11 42705640 42705836 -79138020 + Lx8 LINE L1 6189 6386 -1087 2 910 528 16 0 0 chr11 42705980 42706041 -79137815 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 2 910 1660 128 7 15 chr11 42706690 42706959 -79136897 + RLTR31A_Mm LTR ERVK 1 267 -317 2 910 225 0 0 0 chr11 42706960 42706985 -79136871 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 2 910 995 83 0 0 chr11 42706986 42707119 -79136737 - B1_Mm SINE Alu -6 141 9 2 910 352 227 48 138 chr11 42707116 42707364 -79136492 + RLTR31A_Mm LTR ERVK 243 561 0 2 910 213 380 0 12 chr11 42708651 42708731 -79135125 + L2b LINE L2 3238 3316 -59 2 910 184 323 53 21 chr11 42709401 42709496 -79134360 + MIRc SINE MIR 38 135 -133 2 910 483 33 0 0 chr11 42709787 42709848 -79134008 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 910 25 0 0 0 chr11 42709877 42709902 -79133954 + AT_rich Low_complexity Low_complexity 1 25 0 2 910 1070 77 14 0 chr11 42710266 42710409 -79133447 + B1_Mm SINE Alu 1 145 -2 2 910 596 135 0 21 chr11 42710466 42710610 -79133246 + T-rich Low_complexity Low_complexity 1 141 0 2 910 1108 74 0 51 chr11 42710610 42710766 -79133090 - B1_Mus1 SINE Alu 0 148 1 2 910 819 276 32 40 chr11 42711004 42711253 -79132603 + 7SK RNA RNA 7 253 -78 2 910 5184 132 30 6 chr11 42712788 42713596 -79130260 - Lx3B LINE L1 -1 6972 6146 2 910 4571 175 39 25 chr11 42713596 42714475 -79129381 - RMER13B LTR ERVK -3 905 15 3 910 286 109 0 179 chr11 42714475 42714553 -79129303 - Lx3B LINE L1 -826 6147 6084 2 910 268 78 19 38 chr11 42715040 42715093 -79128763 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 3 910 671 296 13 13 chr11 42715686 42715922 -79127934 - Lx7 LINE L1 -398 7298 7063 3 910 993 81 0 0 chr11 42715924 42716060 -79127796 + (TTC)n Simple_repeat Simple_repeat 3 138 0 3 910 459 113 0 0 chr11 42716071 42716142 -79127714 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 3 910 246 345 79 26 chr11 42716660 42716812 -79127044 - MIR3 SINE MIR -5 203 44 3 910 232 336 108 8 chr11 42718048 42718168 -79125688 + MIR SINE MIR 66 197 -65 3 910 399 340 20 20 chr11 42718283 42718433 -79125423 + Charlie1 DNA MER1_type 32 181 -2600 3 910 3983 138 71 6 chr11 42719188 42719838 -79124018 + RLTR17 LTR ERVK 1 692 0 3 910 360 0 0 0 chr11 42720056 42720096 -79123760 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 910 1420 260 14 16 chr11 42720608 42721052 -79122804 - RMER20A LTR ERVK 0 516 13 3 910 1145 212 121 14 chr11 42721149 42721494 -79122362 - MTD LTR MaLR -10 409 1 3 910 4264 147 27 25 chr11 42722070 42723078 -79120778 + L1Md_F2 LINE L1 402 1408 -4475 3 910 9872 62 198 1 chr11 42723058 42724604 -79119252 + L1Md_F2 LINE L1 3736 5586 -297 3 910 7870 58 3 1 chr11 42724604 42725598 -79118258 + L1Md_F2 LINE L1 5587 6582 0 3 910 593 336 24 44 chr11 42727068 42727342 -79116514 + B4A SINE B4 1 268 -24 3 910 405 0 0 0 chr11 42727342 42727387 -79116469 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 910 593 336 24 44 chr11 42727387 42727408 -79116448 + B4A SINE B4 269 290 -2 3 910 325 291 76 19 chr11 42727771 42727876 -79115980 + ORR1E LTR MaLR 1 111 -248 3 910 182 278 19 0 chr11 42728333 42728387 -79115469 - MIRm SINE MIR -8 268 214 3 910 495 0 0 0 chr11 42728393 42728448 -79115408 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 910 822 256 35 0 chr11 42728820 42729019 -79114837 + B3 SINE B2 4 209 -7 3 910 1375 35 28 11 chr11 42729118 42729470 -79114386 + (TAGA)n Simple_repeat Simple_repeat 1 357 0 3 911 435 149 0 0 chr11 42729497 42729604 -79114252 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 911 186 43 0 0 chr11 42729799 42729822 -79114034 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 911 21 71 0 0 chr11 42729861 42729903 -79113953 + AT_rich Low_complexity Low_complexity 1 42 0 3 911 219 69 0 0 chr11 42730278 42730307 -79113549 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 3 911 444 285 84 39 chr11 42730607 42730786 -79113070 - RMER30 DNA MER1_type -1 201 15 3 911 1311 80 23 6 chr11 42731302 42731479 -79112377 - B2_Mm2 SINE B2 -14 181 2 3 911 447 87 0 0 chr11 42731994 42732063 -79111793 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 911 626 269 35 0 chr11 42732773 42732918 -79110938 - MLT1D LTR MaLR -355 150 1 3 911 540 385 116 6 chr11 42732934 42733279 -79110577 - L2 LINE L2 -620 2799 2417 3 911 795 294 108 7 chr11 42733402 42733679 -79110177 + MER44A DNA MER2_type 6 310 -29 3 911 5174 108 11 38 chr11 42734217 42735592 -79108264 + L1Md_F2 LINE L1 429 1760 -4123 3 911 18120 81 9 3 chr11 42735594 42738241 -79105615 + L1Md_F2 LINE L1 2923 5585 -298 3 911 7275 72 28 1 chr11 42738242 42739212 -79104644 + L1Md_F2 LINE L1 5587 6582 0 3 911 1278 188 74 20 chr11 42739272 42739471 -79104385 - Lx3C LINE L1 -2 6974 6758 3 911 468 0 0 0 chr11 42739471 42739523 -79104333 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 911 441 0 0 0 chr11 42739523 42739571 -79104285 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 911 1278 188 74 20 chr11 42739571 42739668 -79104188 - Lx3C LINE L1 -219 6757 6662 3 911 197 345 127 6 chr11 42739834 42740000 -79103856 + MIR SINE MIR 23 208 -54 3 911 204 333 137 64 chr11 42740257 42740491 -79103365 + L2a LINE L2 3171 3421 -5 3 911 366 140 0 0 chr11 42741770 42741828 -79102028 - B1_Mur4 SINE Alu -90 59 2 3 911 255 270 0 16 chr11 42741775 42741839 -79102017 - B4 SINE B4 -153 139 77 3 911 392 219 186 47 chr11 42743005 42743134 -79100722 - B1F2 SINE Alu -2 147 1 3 911 218 32 32 0 chr11 42743425 42743456 -79100400 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 911 279 309 17 83 chr11 42743752 42743872 -79099984 - L2c LINE L2 -2 3385 3274 3 911 25 0 0 0 chr11 42744166 42744191 -79099665 + AT_rich Low_complexity Low_complexity 1 25 0 3 911 343 246 0 0 chr11 42744486 42744547 -79099309 + ID4_ SINE ID 7 67 -16 3 911 417 39 0 0 chr11 42744903 42744954 -79098902 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3 911 302 295 76 15 chr11 42745260 42745391 -79098465 + MIRm SINE MIR 15 153 -123 3 911 189 359 73 55 chr11 42745606 42745715 -79098141 - MER5A DNA MER1_type -33 156 46 3 911 182 328 109 0 chr11 42746863 42746927 -79096929 - MER5A DNA MER1_type -63 126 56 3 911 2262 262 75 18 chr11 42749069 42749885 -79093971 + Lx9 LINE L1 6318 7179 -465 3 911 38 22 0 0 chr11 42749959 42750004 -79093852 + AT_rich Low_complexity Low_complexity 1 45 0 3 911 1562 101 27 31 chr11 42750177 42750433 -79093423 + Lx LINE L1 6393 6647 -7 3 911 1163 28 28 0 chr11 42750595 42750737 -79093119 + B1_Mm SINE Alu 1 146 -1 3 911 275 366 51 26 chr11 42754471 42754641 -79089215 + L2a LINE L2 3017 3192 -195 3 911 1088 131 132 29 chr11 42754703 42754908 -79088948 + URR1A DNA MER1_type 1 226 0 3 911 293 284 214 23 chr11 42756981 42757154 -79086702 + MIR SINE MIR 1 206 -56 3 911 350 318 76 49 chr11 42760450 42760635 -79083221 - MER113 DNA MER1_type -131 390 201 3 911 284 245 90 20 chr11 42760652 42760752 -79083104 + L1MB3 LINE L1 6046 6152 -31 3 911 241 189 128 51 chr11 42761213 42761291 -79082565 + MER5B DNA MER1_type 77 160 -18 3 911 441 0 0 0 chr11 42764467 42764516 -79079340 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 911 345 140 0 0 chr11 42765949 42766006 -79077850 + (CAT)n Simple_repeat Simple_repeat 2 58 0 3 911 840 250 41 23 chr11 42766252 42766518 -79077338 - B4A SINE B4 -18 274 4 3 911 500 223 58 0 chr11 42766522 42766625 -79077231 - PB1D10 SINE Alu -5 112 4 3 911 4516 53 24 3 chr11 42766799 42767372 -79076484 + L1Md_F2 LINE L1 5986 6570 -12 3 911 21 36 0 0 chr11 42767390 42767418 -79076438 + AT_rich Low_complexity Low_complexity 1 28 0 3 911 1200 115 0 16 chr11 42770022 42770208 -79073648 - B2_Mm2 SINE B2 -10 185 3 3 911 188 304 197 39 chr11 42771039 42771217 -79072639 - L2 LINE L2 -339 3080 2875 3 911 635 233 0 6 chr11 42771851 42772028 -79071828 + (TA)n Simple_repeat Simple_repeat 2 177 0 3 911 225 184 61 0 chr11 42772029 42772092 -79071764 + (TATG)n Simple_repeat Simple_repeat 1 66 0 3 911 420 342 40 7 chr11 42772092 42772242 -79071614 - RSINE1 SINE B4 -8 157 3 3 911 232 342 84 45 chr11 42772303 42772496 -79071360 + L2a LINE L2 3158 3411 -15 3 911 464 347 55 35 chr11 42772542 42772742 -79071114 + Tigger5 DNA MER2_type 30 233 -2173 3 911 473 303 99 42 chr11 42772873 42773209 -79070647 + RLTR16 LTR ERVK 53 414 -154 3 911 186 43 0 0 chr11 42773424 42773447 -79070409 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 3 911 6941 38 0 2 chr11 42774424 42775288 -79068568 - L1Md_F2 LINE L1 0 6582 5721 3 911 382 361 35 0 chr11 42775338 42775482 -79068374 + MIRb SINE MIR 82 230 -38 3 911 1313 82 33 6 chr11 42776048 42776231 -79067625 - B2_Mm2 SINE B2 -7 188 1 3 911 1837 147 55 87 chr11 42776449 42776815 -79067041 + ORR1B1 LTR MaLR 41 394 0 3 911 739 203 29 0 chr11 42777000 42777138 -79066718 + B3A SINE B2 1 142 -56 3 911 265 312 137 23 chr11 42778132 42778263 -79065593 + MIR3 SINE MIR 49 194 -14 3 911 844 130 0 72 chr11 42778337 42778503 -79065353 - L1Md_F2 LINE L1 0 6582 6429 3 911 350 246 183 46 chr11 42779449 42779624 -79064232 + MIRb SINE MIR 49 247 -21 3 911 369 271 80 91 chr11 42779996 42780024 -79063832 - B2_Mm2 SINE B2 -9 186 161 3 911 651 108 0 0 chr11 42780024 42780126 -79063730 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 911 306 0 0 0 chr11 42780126 42780159 -79063697 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 911 629 271 80 91 chr11 42780159 42780316 -79063540 - B3A SINE B2 -35 160 2 3 911 392 318 22 44 chr11 42781382 42781517 -79062339 + B1F2 SINE Alu 18 149 0 3 911 513 273 30 96 chr11 42782495 42782661 -79061195 - RSINE1 SINE B4 -8 157 3 3 911 232 239 45 0 chr11 42782762 42782829 -79061027 - L1M2 LINE L1 -3695 2448 2379 3 911 761 314 75 13 chr11 42782910 42783297 -79060559 - Lx8 LINE L1 -91 7382 6972 3 911 33317 69 2 0 chr11 42783428 42788883 -79054973 - L1Md_F2 LINE L1 -12 6570 1108 3 911 6448 85 3 0 chr11 42788852 42789758 -79054098 - L1Md_F2 LINE L1 -5412 1204 296 3 911 252 320 10 0 chr11 42789780 42789883 -79053973 - L1M2 LINE L1 -3863 2280 2177 3 911 180 331 106 58 chr11 42790624 42790813 -79053043 - L2 LINE L2 -365 3054 2857 3 911 516 284 73 21 chr11 42791744 42792071 -79051785 + L1MB5 LINE L1 5814 6157 -17 3 911 231 157 44 22 chr11 42792150 42792241 -79051615 + CT-rich Low_complexity Low_complexity 2 94 0 3 911 965 299 62 34 chr11 42792285 42792781 -79051075 - Lx8 LINE L1 0 7473 6964 3 911 180 297 51 51 chr11 42792948 42793026 -79050830 - L2c LINE L2 -201 3186 3109 3 911 473 0 18 0 chr11 42793848 42793905 -79049951 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 911 594 288 123 20 chr11 42794060 42794255 -79049601 + B3A SINE B2 2 216 0 3 911 279 54 0 0 chr11 42794939 42794976 -79048880 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 911 935 256 9 0 chr11 42794997 42795208 -79048648 - B3 SINE B2 -2 214 2 3 911 362 89 7 0 chr11 42795270 42795325 -79048531 - Lx3C LINE L1 -528 6448 6401 3 911 225 241 19 0 chr11 42795984 42796038 -79047818 + (TTTA)n Simple_repeat Simple_repeat 1 55 0 3 911 2956 6 0 0 chr11 42796826 42797176 -79046680 - L1Md_A LINE L1 -1663 4220 3871 3 911 11522 7 0 0 chr11 42797176 42798534 -79045322 + L1Md_A LINE L1 4229 5586 -297 3 911 8808 14 1 0 chr11 42798534 42799528 -79044328 + L1Md_A LINE L1 5587 6581 -1 3 911 641 161 0 8 chr11 42799541 42799672 -79044184 + CT-rich Low_complexity Low_complexity 1 130 0 4 911 483 18 0 0 chr11 42799672 42799728 -79044128 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 911 309 298 127 33 chr11 42800604 42800816 -79043040 + MLT1C LTR MaLR 6 237 -230 4 911 397 318 125 7 chr11 42801131 42801283 -79042573 + MLT1C LTR MaLR 214 383 -84 4 911 8194 26 0 0 chr11 42801400 42802501 -79041355 - L1Md_A LINE L1 0 6582 5508 4 911 3294 31 18 0 chr11 42802663 42803052 -79040804 - MTA_Mm LTR MaLR 0 396 1 4 911 1329 140 0 0 chr11 42803414 42803614 -79040242 - RLTR27 LTR ERVK 0 309 110 4 911 2022 66 0 0 chr11 42803606 42803864 -79039992 - RLTR10A LTR ERVK -153 258 1 4 911 637 239 23 0 chr11 42803864 42803994 -79039862 - ID_B1 SINE B4 -13 211 79 4 911 283 222 74 115 chr11 42803889 42804011 -79039845 + YREP_Mm Unknown Unknown 213 329 -1483 4 911 261 93 56 0 chr11 42804175 42804229 -79039627 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 4 911 474 18 0 0 chr11 42804254 42804309 -79039547 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 911 414 0 0 0 chr11 42804721 42804767 -79039089 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 911 3247 169 37 83 chr11 42804779 42805365 -79038491 - L1_Mur3 LINE L1 -3840 2037 1432 4 911 243 0 0 0 chr11 42805365 42805392 -79038464 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 911 3247 169 37 83 chr11 42805392 42805446 -79038410 - L1_Mur2 LINE L1 -4446 1431 1431 4 911 914 104 97 0 chr11 42805446 42805580 -79038276 - B1_Mus1 SINE Alu 0 148 2 4 911 3247 215 32 52 chr11 42805580 42806204 -79037652 - L1_Mur3 LINE L1 -4446 1431 813 4 911 186 71 0 0 chr11 42806378 42806406 -79037450 + (TTGTG)n Simple_repeat Simple_repeat 5 32 0 4 911 539 279 14 0 chr11 42806410 42806550 -79037306 - B1F SINE Alu -7 142 1 4 911 1457 286 105 16 chr11 42806550 42807360 -79036496 - L1MC1 LINE L1 -281 6052 5164 4 911 765 239 29 45 chr11 42807416 42807727 -79036129 - L1MC1 LINE L1 -1106 5040 4735 4 911 288 239 0 0 chr11 42807746 42807817 -79036039 - L1MA5 LINE L1 -23 6277 6207 4 911 530 338 56 3 chr11 42807811 42808099 -79035757 - L1MA5 LINE L1 -273 6027 5725 4 911 906 316 62 37 chr11 42808139 42809154 -79034702 - L1MA5 LINE L1 -995 5148 4109 4 911 3577 170 38 11 chr11 42809178 42809803 -79034053 + RLTR26 LTR ERVK 1 642 0 4 911 732 217 70 19 chr11 42809808 42810066 -79033790 - L1MA5 LINE L1 -2058 4085 3815 4 911 358 190 58 39 chr11 42810058 42810162 -79033694 - L1MA5 LINE L1 -2458 3682 3577 4 911 435 314 83 42 chr11 42810296 42810935 -79032921 - L1_Rod LINE L1 -3666 2181 1517 4 911 208 222 0 27 chr11 42811158 42811232 -79032624 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 4 911 913 314 4 15 chr11 42811247 42811515 -79032341 - B4A SINE B4 -3 289 25 4 911 288 53 0 0 chr11 42812450 42812488 -79031368 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 911 336 228 47 41 chr11 42813581 42813750 -79030106 - L1MC1 LINE L1 -1612 4534 4365 4 911 613 254 139 40 chr11 42813810 42814163 -79029693 - L1MC1 LINE L1 -2032 4114 3727 4 911 209 355 67 35 chr11 42814581 42814790 -79029066 - MIR SINE MIR -16 252 28 4 911 483 223 0 0 chr11 42815513 42815625 -79028231 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 911 243 333 84 62 chr11 42818372 42818551 -79025305 + MLT1K LTR MaLR 141 323 -272 4 911 2644 186 68 70 chr11 42818563 42819235 -79024621 - RMER19B LTR ERVK -12 890 1 4 911 433 255 0 121 chr11 42819705 42819821 -79024035 - B1_Mus2 SINE Alu -45 102 1 4 911 1147 296 51 40 chr11 42819822 42820192 -79023664 - MTEa LTR MaLR -5 374 1 4 911 1306 172 95 138 chr11 42820379 42820588 -79023268 + ORR1C2 LTR MaLR 11 190 -194 4 911 312 91 0 0 chr11 42820588 42820632 -79023224 + (CCG)n Simple_repeat Simple_repeat 2 45 0 4 911 1306 172 95 138 chr11 42820632 42820813 -79023043 + ORR1C2 LTR MaLR 191 384 0 4 911 297 0 0 0 chr11 42821428 42821461 -79022395 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4 911 182 284 53 26 chr11 42821601 42821677 -79022179 + L4 LINE RTE 1708 1785 -244 4 911 303 258 54 0 chr11 42821786 42821879 -79021977 - MLT2C1 LTR ERVL -273 124 27 4 911 614 268 122 28 chr11 42821939 42822300 -79021556 + Charlie1 DNA MER1_type 2387 2781 0 4 911 1549 273 55 5 chr11 42822970 42823368 -79020488 + MTD LTR MaLR 2 419 0 4 911 231 365 62 0 chr11 42823565 42823661 -79020195 - MER102b DNA MER1_type -205 136 35 4 911 1623 244 57 16 chr11 42824555 42824938 -79018918 - MTD LTR MaLR -14 405 7 4 911 207 184 0 0 chr11 42827083 42827095 -79016761 + A-rich Low_complexity Low_complexity 1 12 0 4 911 1198 85 11 0 chr11 42827095 42827272 -79016584 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 911 207 184 0 0 chr11 42827272 42827297 -79016559 + A-rich Low_complexity Low_complexity 13 37 0 4 911 204 322 134 17 chr11 42827309 42827455 -79016401 - MIRm SINE MIR -102 166 12 4 911 32935 68 7 1 chr11 42827619 42833824 -79010032 - L1Md_F2 LINE L1 0 6582 336 4 911 396 280 109 35 chr11 42834043 42834217 -79009639 + MER5A DNA MER1_type 1 187 -2 4 911 558 109 0 0 chr11 42834715 42834816 -79009040 + (TC)n Simple_repeat Simple_repeat 2 102 0 4 911 843 274 31 114 chr11 42834828 42835145 -79008711 - B4 SINE B4 0 292 2 4 911 963 212 71 25 chr11 42835306 42835586 -79008270 - Lx8 LINE L1 -2 7471 7179 4 911 211 346 12 12 chr11 42836860 42836942 -79006914 - MIR SINE MIR -152 110 29 4 911 204 135 0 0 chr11 42837056 42837093 -79006763 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 911 426 39 0 0 chr11 42837093 42837145 -79006711 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 911 745 274 0 19 chr11 42837188 42837348 -79006508 - B3A SINE B2 -41 157 1 4 911 307 291 71 18 chr11 42837535 42837647 -79006209 + Tigger7 DNA MER2_type 1 118 -2373 4 911 307 272 123 31 chr11 42837664 42837827 -79006029 + Tigger7 DNA MER2_type 2312 2489 -2 4 911 236 326 78 41 chr11 42838174 42838555 -79005301 - L1MC4a LINE L1 -1886 5996 5605 4 911 450 0 0 0 chr11 42838713 42838763 -79005093 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 911 382 333 33 45 chr11 42838782 42839115 -79004741 - L1MC4a LINE L1 -2298 5584 5256 4 911 577 199 6 144 chr11 42839757 42839949 -79003907 - Lx7 LINE L1 -84 5793 5632 4 911 269 118 0 38 chr11 42839989 42840042 -79003814 - Lx7 LINE L1 -1819 5641 5591 4 911 866 229 25 80 chr11 42840096 42840371 -79003485 + Lx6 LINE L1 7186 7445 -15 4 911 2399 50 0 0 chr11 42841367 42841664 -79002192 - L1Md_F2 LINE L1 -12 6570 6274 4 911 3364 150 4 6 chr11 42841688 42842247 -79001609 + RMER12 LTR ERVK 6 563 -759 4 911 1083 223 162 169 chr11 42842244 42842794 -79001062 + RMER12 LTR ERVK 777 1322 0 4 911 605 158 0 0 chr11 42843293 42843413 -79000443 + (TA)n Simple_repeat Simple_repeat 1 120 0 4 911 939 303 55 20 chr11 42844486 42845031 -78998825 - L1MA4 LINE L1 -466 5834 5271 4 911 363 287 34 25 chr11 42845139 42845257 -78998599 + MTD LTR MaLR 20 138 -281 4 911 3508 169 61 11 chr11 42845294 42845938 -78997918 - RLTR17 LTR ERVK -16 676 1 4 911 2320 207 18 28 chr11 42845938 42846442 -78997414 - RLTR11A2 LTR ERVK -28 499 1 4 911 813 284 104 21 chr11 42846443 42846731 -78997125 + MTD LTR MaLR 108 419 0 4 911 1913 163 92 0 chr11 42847084 42847433 -78996423 - ORR1C2 LTR MaLR 0 384 4 4 911 294 29 0 0 chr11 42847852 42847887 -78995969 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 911 291 114 0 0 chr11 42848932 42848976 -78994880 + (T)n Simple_repeat Simple_repeat 1 44 0 4 911 450 0 0 0 chr11 42849229 42849279 -78994577 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 911 478 313 42 47 chr11 42851322 42851513 -78992343 + B3A SINE B2 2 191 -7 4 911 321 336 35 9 chr11 42851538 42851652 -78992204 + ID_B1 SINE B4 86 202 -22 4 911 404 67 17 0 chr11 42851655 42851715 -78992141 + (GGGAGA)n Simple_repeat Simple_repeat 1 61 0 4 911 32 26 0 0 chr11 42852080 42852119 -78991737 + AT_rich Low_complexity Low_complexity 1 39 0 4 911 222 37 0 0 chr11 42852540 42852567 -78991289 + (T)n Simple_repeat Simple_repeat 1 27 0 4 911 244 259 102 51 chr11 42852567 42852685 -78991171 + MER58C DNA MER1_type 79 202 -13 4 911 370 324 83 76 chr11 42852716 42852937 -78990919 + MLT1C LTR MaLR 147 383 -84 4 911 1180 55 7 0 chr11 42852937 42853083 -78990773 + B1_Mm SINE Alu 1 147 0 4 911 370 324 83 76 chr11 42853083 42853175 -78990681 + MLT1C LTR MaLR 384 461 -6 4 911 544 275 150 0 chr11 42853644 42853837 -78990019 - ID_B1 SINE B4 -2 222 1 4 911 195 42 0 0 chr11 42854461 42854485 -78989371 + (CAT)n Simple_repeat Simple_repeat 2 25 0 4 911 23 33 0 0 chr11 42854787 42854817 -78989039 + AT_rich Low_complexity Low_complexity 1 30 0 4 911 5617 82 19 2 chr11 42854822 42856243 -78987613 + L1VL2 LINE L1 174 1620 -1995 4 911 4796 131 104 16 chr11 42856234 42856980 -78986876 + Lx LINE L1 5706 6518 -136 4 911 375 23 0 0 chr11 42856980 42857024 -78986832 + (TGGG)n Simple_repeat Simple_repeat 2 45 0 4 911 4796 131 104 16 chr11 42857024 42857145 -78986711 + Lx LINE L1 6519 6648 -6 4 911 385 307 131 34 chr11 42858113 42858349 -78985507 + MIR SINE MIR 2 260 -2 4 911 623 299 23 23 chr11 42858666 42858882 -78984974 + MLT2B2 LTR ERVL 2 217 -298 4 911 396 0 0 0 chr11 42858882 42858926 -78984930 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 911 531 0 0 0 chr11 42858927 42858986 -78984870 + (GAA)n Simple_repeat Simple_repeat 2 60 0 4 911 1208 94 0 11 chr11 42858986 42859048 -78984808 + (GGA)n Simple_repeat Simple_repeat 1 61 0 4 911 1420 0 0 27 chr11 42859048 42859233 -78984623 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 911 1208 94 0 11 chr11 42859233 42859352 -78984504 + (GGA)n Simple_repeat Simple_repeat 2 120 0 4 911 613 49 0 47 chr11 42859360 42859467 -78984389 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 4 911 255 250 170 22 chr11 42859529 42859664 -78984192 + MLT2B2 LTR ERVL 387 541 -13 4 912 207 271 156 18 chr11 42861563 42861672 -78982184 + MIR SINE MIR 48 171 -91 4 912 258 289 35 17 chr11 42861755 42861871 -78981985 - MIR SINE MIR -73 189 72 4 912 376 309 117 93 chr11 42864245 42864545 -78979311 - MLT1C LTR MaLR -102 365 59 4 912 183 380 0 0 chr11 42864610 42864681 -78979175 - MIRc SINE MIR -133 135 65 4 912 270 269 42 69 chr11 42864900 42864972 -78978884 + ID4_ SINE ID 6 75 -8 4 912 1930 110 9 59 chr11 42866483 42866822 -78977034 - RLTRETN_Mm LTR ERVK 0 322 1 4 912 205 344 146 26 chr11 42867226 42867388 -78976468 + L2a LINE L2 2936 3116 -310 4 912 213 338 43 50 chr11 42867577 42867717 -78976139 + L2a LINE L2 3274 3412 -14 4 912 24 0 0 0 chr11 42867954 42867978 -78975878 + AT_rich Low_complexity Low_complexity 1 24 0 4 912 297 0 0 0 chr11 42868042 42868075 -78975781 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 4 912 302 358 42 21 chr11 42869712 42869903 -78973953 - MLT1J LTR MaLR -234 278 84 5 912 216 195 0 0 chr11 42870041 42870114 -78973742 + (CAGA)n Simple_repeat Simple_repeat 1 73 0 5 912 259 281 64 59 chr11 42870451 42870655 -78973201 - L1MA6 LINE L1 -30 6270 6066 5 912 1588 276 72 44 chr11 42870742 42871632 -78972224 - L1MA6 LINE L1 -223 6077 5156 5 912 450 0 0 0 chr11 42871632 42871682 -78972174 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 5 912 585 272 72 70 chr11 42871682 42871891 -78971965 - L1MA6 LINE L1 -988 5155 4954 5 912 363 364 72 13 chr11 42871931 42872084 -78971772 + MLT1J LTR MaLR 124 285 -227 5 912 293 346 73 64 chr11 42874239 42874458 -78969398 - MER102a DNA MER1_type -18 312 92 5 912 393 283 0 0 chr11 42874789 42874969 -78968887 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 912 218 32 32 0 chr11 42875271 42875302 -78968554 + (TATG)n Simple_repeat Simple_repeat 4 35 0 5 912 434 275 16 48 chr11 42875398 42875585 -78968271 - Lx9 LINE L1 -239 7405 7225 5 912 325 52 33 33 chr11 42875610 42875670 -78968186 + (CAGAGA)n Simple_repeat Simple_repeat 4 63 0 5 912 447 304 149 47 chr11 42876610 42876886 -78966970 - MLT1L LTR MaLR -301 309 6 5 912 5558 38 4 0 chr11 42877944 42878638 -78965218 - L1Md_F2 LINE L1 -299 6283 5587 5 912 1769 72 3 175 chr11 42878649 42878987 -78964869 + L1Md_F2 LINE L1 6293 6572 -10 5 912 219 352 0 0 chr11 42879672 42879743 -78964113 - MIRb SINE MIR -162 106 36 5 912 311 285 32 38 chr11 42879752 42879938 -78963918 + L1MA8 LINE L1 6104 6288 -3 5 912 711 171 91 4 chr11 42880108 42880345 -78963511 - RMER1B Other Other -14 1052 790 5 912 889 178 65 0 chr11 42880346 42880515 -78963341 + MTB_Mm LTR MaLR 228 407 0 5 912 23 0 0 0 chr11 42880643 42880666 -78963190 + AT_rich Low_complexity Low_complexity 1 23 0 5 912 22 35 0 0 chr11 42880891 42880920 -78962936 + AT_rich Low_complexity Low_complexity 1 29 0 5 912 304 181 24 0 chr11 42881023 42881106 -78962750 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 912 3349 33 8 0 chr11 42881137 42881530 -78962326 + MTA_Mm LTR MaLR 1 396 0 5 912 306 51 0 0 chr11 42881530 42881569 -78962287 + MTA_Mm-int LTR MaLR 1 39 -1059 5 912 411 52 0 0 chr11 42881569 42881627 -78962229 + MERVL-int LTR ERVL 5428 5485 0 5 912 3937 45 8 0 chr11 42881627 42882098 -78961758 + MT2C_Mm LTR ERVL 1 475 0 5 912 1238 312 88 39 chr11 42882098 42882795 -78961061 - Lx9 LINE L1 -211 7433 6703 5 912 238 275 58 8 chr11 42882811 42882932 -78960924 - L1M5 LINE L1 -303 5821 5695 5 912 315 49 0 0 chr11 42883835 42883876 -78959980 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 912 842 212 92 19 chr11 42884094 42884301 -78959555 + ID_B1 SINE B4 3 224 0 5 912 362 332 28 25 chr11 42884338 42884518 -78959338 + MIRb SINE MIR 49 239 -29 5 912 268 387 0 35 chr11 42884669 42884784 -78959072 - L2c LINE L2 -2 3385 3275 5 912 285 290 76 52 chr11 42886959 42887114 -78956742 + MIRc SINE MIR 39 191 -71 5 912 212 349 119 28 chr11 42887447 42887556 -78956300 - MIRc SINE MIR -141 127 9 5 912 264 272 158 43 chr11 42887922 42888176 -78955680 + L1MA7 LINE L1 5511 5793 -498 5 912 1098 256 58 46 chr11 42888260 42888756 -78955100 + L1MA7 LINE L1 5789 6290 -1 5 912 477 290 61 14 chr11 42889069 42889216 -78954640 + MIR SINE MIR 108 261 -1 5 912 1252 285 108 38 chr11 42889372 42889955 -78953901 - MLT1E3 LTR MaLR 0 624 1 5 912 2609 37 0 0 chr11 42890066 42890361 -78953495 + L1Md_A LINE L1 6287 6581 -1 5 912 334 267 93 17 chr11 42890609 42890727 -78953129 - B1F SINE Alu 0 149 23 5 912 209 253 140 50 chr11 42890886 42890986 -78952870 + MIRc SINE MIR 83 191 -77 5 912 3619 134 51 58 chr11 42890996 42891638 -78952218 + RLTR26 LTR ERVK 1 638 -4 5 912 398 321 118 50 chr11 42892079 42892341 -78951515 - B4 SINE B4 -12 280 1 5 912 41494 12 0 6 chr11 42892409 42898560 -78945296 - L1Md_A LINE L1 0 6582 473 5 912 21 36 0 0 chr11 42898749 42898777 -78945079 + AT_rich Low_complexity Low_complexity 1 28 0 5 912 847 269 48 68 chr11 42899143 42899438 -78944418 - B4 SINE B4 -2 290 2 5 912 731 250 21 42 chr11 42900938 42901130 -78942726 + B3A SINE B2 5 192 -6 5 912 185 255 20 60 chr11 42901173 42901223 -78942633 + MIR SINE MIR 118 165 -97 5 912 180 0 0 0 chr11 42901822 42901842 -78942014 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 912 225 0 0 0 chr11 42901884 42901909 -78941947 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 912 202 333 12 23 chr11 42901966 42902052 -78941804 + MIR SINE MIR 21 105 -157 5 912 351 0 0 0 chr11 42903226 42903265 -78940591 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 5 912 316 308 164 64 chr11 42903536 42903866 -78939990 + Tigger10 DNA Tigger 927 1289 -554 5 912 459 290 107 0 chr11 42904794 42904925 -78938931 - RSINE1 SINE B4 -17 148 4 5 912 352 281 84 21 chr11 42905237 42905379 -78938477 + MIR SINE MIR 111 261 -1 5 912 306 0 0 0 chr11 42906481 42906515 -78937341 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 912 838 248 38 24 chr11 42906626 42906837 -78937019 - MER47B DNA MER2_type -167 251 38 5 912 5024 43 5 22 chr11 42907500 42908097 -78935759 - LTRIS_Mus LTR ERV1 0 587 1 5 912 924 210 0 0 chr11 42908294 42908461 -78935395 + B3A SINE B2 1 167 -31 5 912 281 244 156 57 chr11 42909030 42909152 -78934704 - MLT1A1 LTR MaLR -20 388 255 5 912 202 340 34 48 chr11 42909294 42909414 -78934442 + MIR SINE MIR 27 140 -128 5 912 250 350 156 11 chr11 42910644 42910823 -78933033 - L2b LINE L2 -224 3151 2947 5 912 853 270 5 20 chr11 42911201 42911401 -78932455 + B4A SINE B4 2 198 -94 5 912 426 108 0 0 chr11 42911452 42911517 -78932339 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 5 912 428 63 0 31 chr11 42911545 42911610 -78932246 + (CATA)n Simple_repeat Simple_repeat 4 66 0 5 912 180 368 215 5 chr11 42911990 42912181 -78931675 + MIRb SINE MIR 17 247 -21 5 912 980 302 17 24 chr11 42913111 42913399 -78930457 + B4 SINE B4 7 292 0 5 912 391 318 78 61 chr11 42913464 42913703 -78930153 - MLT1C LTR MaLR 0 467 160 5 912 1247 193 31 18 chr11 42913703 42913857 -78929999 - URR1B DNA MER1_type 0 225 71 5 912 276 50 0 91 chr11 42913857 42913923 -78929933 + (TTG)n Simple_repeat Simple_repeat 1 60 0 5 912 1162 52 0 7 chr11 42913923 42914058 -78929798 - B1_Mus1 SINE Alu -13 135 2 5 912 1247 193 31 18 chr11 42914058 42914124 -78929732 - URR1B DNA MER1_type -155 70 2 5 912 391 304 75 40 chr11 42914124 42914252 -78929604 - MLT1C LTR MaLR -289 178 45 5 912 520 115 9 9 chr11 42914715 42914740 -78929116 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 912 621 72 0 0 chr11 42914740 42914823 -78929033 + (TTC)n Simple_repeat Simple_repeat 3 85 0 5 912 520 115 9 9 chr11 42914823 42914902 -78928954 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 912 311 312 58 71 chr11 42915435 42915590 -78928266 - MER102b DNA MER1_type -188 153 1 5 912 576 0 0 0 chr11 42915664 42915728 -78928128 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 912 230 297 26 39 chr11 42915759 42915836 -78928020 - MIR SINE MIR -165 97 22 5 912 685 314 107 10 chr11 42916586 42916876 -78926980 - Helitron3Na_Mam RC Helitron -101 385 68 5 912 292 256 93 0 chr11 42917242 42917328 -78926528 - MER20 DNA MER1_type -11 208 115 5 912 387 0 0 0 chr11 42917332 42917375 -78926481 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 912 489 231 0 0 chr11 42917414 42917648 -78926208 + (CA)n Simple_repeat Simple_repeat 1 234 0 5 912 1188 296 36 6 chr11 42919081 42919418 -78924438 - Lx8 LINE L1 -302 7171 6825 5 912 31 99 0 0 chr11 42920037 42920138 -78923718 + AT_rich Low_complexity Low_complexity 1 101 0 5 912 239 82 0 58 chr11 42920385 42920437 -78923419 + (T)n Simple_repeat Simple_repeat 1 49 0 5 912 251 361 0 30 chr11 42920851 42920951 -78922905 + MIRb SINE MIR 160 256 -12 5 912 362 115 0 16 chr11 42921114 42921176 -78922680 + (CCCCCT)n Simple_repeat Simple_repeat 1 61 0 5 912 656 247 166 14 chr11 42921190 42921401 -78922455 - B4 SINE B4 -41 251 1 5 912 2838 91 37 20 chr11 42921745 42922150 -78921706 + L1_Mus3 LINE L1 6227 6638 0 5 912 450 0 0 0 chr11 42922822 42922872 -78920984 + (TAA)n Simple_repeat Simple_repeat 2 51 0 5 912 192 77 0 0 chr11 42923973 42923999 -78919857 + (T)n Simple_repeat Simple_repeat 1 26 0 5 912 812 329 67 21 chr11 42924015 42924359 -78919497 - ORR1D2-int LTR MaLR -541 829 523 5 912 957 57 8 0 chr11 42924352 42924474 -78919382 - B1_Mus2 SINE Alu -6 141 19 5 912 1686 118 65 61 chr11 42924474 42924753 -78919103 + L1Md_F2 LINE L1 6295 6574 -8 5 912 1090 244 174 44 chr11 42924786 42924952 -78918904 - ORR1D2-int LTR MaLR -852 518 304 5 912 270 0 0 0 chr11 42924952 42924982 -78918874 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 912 1207 59 0 0 chr11 42924982 42925118 -78918738 - B1_Mus2 SINE Alu -10 137 2 5 912 1090 244 174 44 chr11 42925118 42925357 -78918499 - ORR1D2-int LTR MaLR -1067 303 60 5 912 1136 250 123 15 chr11 42925397 42925730 -78918126 - ORR1D2 LTR MaLR 0 370 2 5 912 336 329 84 23 chr11 42925750 42926029 -78917827 - L1MC LINE L1 -1276 4870 4575 5 912 605 105 0 0 chr11 42926109 42926195 -78917661 - L1_Mus1 LINE L1 0 6567 6482 5 912 986 292 112 56 chr11 42926256 42926603 -78917253 - L1M4 LINE L1 -1799 4347 3980 5 912 311 377 19 19 chr11 42926603 42926765 -78917091 + RSINE1 SINE B4 2 163 -2 5 912 986 292 112 56 chr11 42926765 42926852 -78917004 - L1M4 LINE L1 -2167 3979 3911 5 912 847 96 85 35 chr11 42926852 42926993 -78916863 - L1Md_F2 LINE L1 0 6582 6435 5 912 986 292 112 56 chr11 42926993 42927345 -78916511 - L1M4 LINE L1 -2236 3910 3516 5 912 638 233 43 0 chr11 42927377 42927493 -78916363 - B3A SINE B2 -77 121 1 5 912 260 85 40 60 chr11 42927957 42928007 -78915849 + U2 snRNA snRNA 1 49 -139 5 912 801 310 112 16 chr11 42928142 42928718 -78915138 - L1MA4 LINE L1 -362 5938 5320 5 912 287 298 54 63 chr11 42928822 42928933 -78914923 + MIR SINE MIR 74 186 -90 5 912 1018 335 82 29 chr11 42930506 42930997 -78912859 - MER77 LTR ERVL -39 568 52 5 912 288 0 0 0 chr11 42931725 42931757 -78912099 + (A)n Simple_repeat Simple_repeat 1 32 0 5 912 5207 81 14 9 chr11 42932275 42932944 -78910912 - L1_Mus1 LINE L1 0 6567 5896 5 912 4728 99 3 0 chr11 42932944 42933581 -78910275 + L1_Mus1 LINE L1 5235 5873 -10 5 912 336 327 0 0 chr11 42933950 42934051 -78909805 - L2a LINE L2 -91 3335 3235 6 912 1840 178 96 15 chr11 42934161 42934555 -78909301 - Lx9 LINE L1 -1 7643 7218 6 912 198 336 135 9 chr11 42934636 42934747 -78909109 + L2a LINE L2 3301 3425 -1 6 912 366 23 0 0 chr11 42935343 42935386 -78908470 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 912 5710 149 28 2 chr11 42936003 42937044 -78906812 - Lx5 LINE L1 -1100 5950 4870 6 912 5317 216 25 11 chr11 42937046 42938106 -78905750 + Lx5 LINE L1 5972 7045 -5 6 912 465 286 18 67 chr11 42938806 42938971 -78904885 + B3A SINE B2 42 198 0 6 912 1452 44 0 0 chr11 42939099 42939347 -78904509 + (CA)n Simple_repeat Simple_repeat 1 248 0 6 912 512 337 26 7 chr11 42939394 42939558 -78904298 - B3 SINE B2 -6 192 17 6 912 324 308 66 0 chr11 42939578 42939669 -78904187 - PB1D9 SINE Alu -6 114 18 6 912 2431 62 6 48 chr11 42940017 42940353 -78903503 - RLTRETN_Mm LTR ERVK 0 322 1 6 912 2587 21 11 0 chr11 42940775 42941062 -78902794 - L1Md_F2 LINE L1 -2 6580 6291 6 912 987 109 0 0 chr11 42941086 42941224 -78902632 + B1_Mus2 SINE Alu 10 147 0 6 912 405 90 0 0 chr11 42941224 42941291 -78902565 + (A)n Simple_repeat Simple_repeat 1 67 0 6 912 229 352 80 40 chr11 42941448 42941599 -78902257 + MIR SINE MIR 49 205 -57 6 912 18860 79 10 22 chr11 42941927 42942351 -78901505 - L1VL4 LINE L1 -2 3557 3129 6 912 288 0 0 0 chr11 42942351 42942383 -78901473 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 6 912 18860 83 8 9 chr11 42942383 42944962 -78898894 - L1VL4 LINE L1 -431 3128 595 6 912 1078 78 7 0 chr11 42944962 42945104 -78898752 - L1_Mus1 LINE L1 0 6567 6425 6 912 5144 118 19 14 chr11 42945104 42945479 -78898377 - L1VL4 LINE L1 -5708 594 206 6 912 22 70 0 0 chr11 42945642 42945685 -78898171 + AT_rich Low_complexity Low_complexity 1 43 0 6 912 7782 75 10 1 chr11 42945884 42947288 -78896568 - L1_Mus2 LINE L1 -3 6563 5148 6 912 380 291 110 39 chr11 42947669 42947851 -78896005 + MIR SINE MIR 3 197 -65 6 912 535 311 91 14 chr11 42948002 42948305 -78895551 - L1M5 LINE L1 -438 5735 5411 6 912 1173 107 85 0 chr11 42949891 42949919 -78893937 - B2_Mm2 SINE B2 -2 193 155 6 912 245 75 0 24 chr11 42949919 42949960 -78893896 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 912 1173 107 85 0 chr11 42949960 42950108 -78893748 - B2_Mm2 SINE B2 -41 154 3 6 912 544 156 0 29 chr11 42952055 42952194 -78891662 + (GTGTG)n Simple_repeat Simple_repeat 4 138 0 6 912 236 382 0 0 chr11 42954758 42954834 -78889022 + MLT1J2 LTR MaLR 266 341 -107 6 912 23 0 0 0 chr11 42955593 42955616 -78888240 + AT_rich Low_complexity Low_complexity 1 23 0 6 912 802 221 6 25 chr11 42955734 42955892 -78887964 + B4 SINE B4 5 159 -133 6 912 21 0 0 0 chr11 42956098 42956119 -78887737 + AT_rich Low_complexity Low_complexity 1 21 0 6 912 726 294 31 50 chr11 42957245 42957467 -78886389 - B4 SINE B4 -74 218 1 6 912 302 152 17 0 chr11 42958276 42958335 -78885521 + GA-rich Low_complexity Low_complexity 3 62 0 6 912 1392 56 0 0 chr11 42958335 42958513 -78885343 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 6 912 285 220 61 80 chr11 42959062 42959225 -78884631 - L1MC4 LINE L1 -183 7859 7700 6 912 443 241 0 79 chr11 42959289 42959415 -78884441 - PB1D10 SINE Alu -1 116 1 6 912 242 250 132 58 chr11 42959453 42959627 -78884229 - L1MC4 LINE L1 -376 7666 7480 6 912 221 339 16 0 chr11 42959900 42959962 -78883894 - ID SINE ID -154 70 8 6 912 344 326 29 15 chr11 42959989 42960126 -78883730 - B1F1 SINE Alu -8 141 3 6 912 23 0 0 0 chr11 42960130 42960153 -78883703 + AT_rich Low_complexity Low_complexity 1 23 0 6 912 239 230 107 13 chr11 42960979 42961054 -78882802 - MTEb LTR MaLR -19 360 279 6 912 573 189 89 8 chr11 42961071 42961194 -78882662 - ORR1D1 LTR MaLR -14 360 228 6 912 338 236 28 0 chr11 42961195 42961267 -78882589 - ORR1D1 LTR MaLR -298 76 3 6 912 590 216 234 16 chr11 42962561 42962745 -78881111 - URR1B DNA MER1_type 0 225 2 6 912 240 207 17 0 chr11 42963015 42963073 -78880783 + GA-rich Low_complexity Low_complexity 2 60 0 6 912 301 314 46 28 chr11 42963075 42963183 -78880673 - B1F1 SINE Alu -26 123 14 6 912 503 274 92 54 chr11 42963087 42963196 -78880660 - ID_B1 SINE B4 -32 192 83 6 912 2530 81 3 58 chr11 42963196 42963539 -78880317 + ORR1A2 LTR MaLR 1 324 -3 6 912 503 274 92 54 chr11 42963539 42963614 -78880242 - ID SINE ID -142 82 1 6 912 186 43 0 0 chr11 42963878 42963901 -78879955 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6 912 889 211 0 0 chr11 42963908 42964055 -78879801 - B1_Mur4 SINE Alu -2 148 2 6 912 29 47 0 0 chr11 42964066 42964109 -78879747 + AT_rich Low_complexity Low_complexity 1 43 0 6 912 904 241 11 21 chr11 42964197 42964388 -78879468 + B3 SINE B2 25 213 -3 6 912 837 249 31 59 chr11 42964469 42964691 -78879165 - B3 SINE B2 0 216 1 6 912 644 332 10 47 chr11 42965774 42966071 -78877785 + B4A SINE B4 5 290 -2 6 912 681 262 14 7 chr11 42966300 42966442 -78877414 + RSINE1 SINE B4 1 143 -22 6 912 552 30 0 0 chr11 42966457 42966523 -78877333 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 912 207 0 0 0 chr11 42966524 42966547 -78877309 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 912 641 76 0 11 chr11 42967018 42967111 -78876745 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 6 912 315 49 0 0 chr11 42967112 42967153 -78876703 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 912 635 300 8 0 chr11 42967154 42967284 -78876572 - RSINE1 SINE B4 -20 145 15 6 912 4914 183 87 69 chr11 42967325 42968507 -78875349 - Lx9 LINE L1 -2 7642 6440 6 912 285 301 69 54 chr11 42968690 42968820 -78875036 + MER20 DNA MER1_type 86 217 -2 6 912 360 0 0 0 chr11 42968965 42969005 -78874851 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 912 180 152 0 0 chr11 42969251 42969284 -78874572 + T-rich Low_complexity Low_complexity 1 33 0 6 912 589 199 23 6 chr11 42970658 42970835 -78873021 + CT-rich Low_complexity Low_complexity 1 180 0 6 912 602 248 37 15 chr11 42971700 42971835 -78872021 + ID_B1 SINE B4 87 224 0 6 912 771 92 0 0 chr11 42972932 42973041 -78870815 + (GGAAA)n Simple_repeat Simple_repeat 3 111 0 6 912 282 301 0 12 chr11 42973465 42973549 -78870307 - MLT1L LTR MaLR -368 242 160 6 912 492 18 0 0 chr11 42974516 42974573 -78869283 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 912 1004 335 3 0 chr11 42974598 42974885 -78868971 - B4A SINE B4 -4 288 1 6 912 194 258 30 15 chr11 42975096 42975163 -78868693 - L2b LINE L2 -221 3154 3087 6 912 399 21 0 0 chr11 42975317 42975365 -78868491 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 912 525 244 17 0 chr11 42975433 42975548 -78868308 - B4A SINE B4 -41 251 135 6 912 359 242 0 0 chr11 42975559 42975625 -78868231 - B4A SINE B4 -226 66 1 6 912 1003 231 112 12 chr11 42978758 42979016 -78864840 + B4 SINE B4 1 284 -8 6 912 292 339 5 12 chr11 42979638 42979755 -78864101 - MIRb SINE MIR -100 176 59 6 912 5288 52 16 3 chr11 42979778 42980400 -78863456 - L1Md_F2 LINE L1 -11 6571 5942 6 912 889 242 16 32 chr11 42980432 42980620 -78863236 - B3A SINE B2 -13 185 1 6 912 5438 37 5 8 chr11 42981603 42982224 -78861632 - L1Md_F2 LINE L1 -1 6581 5963 6 912 262 173 0 37 chr11 42982641 42982695 -78861161 - LTR89 LTR ERVL? -33 846 795 6 912 192 48 23 45 chr11 42983898 42983942 -78859914 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 6 912 4084 55 25 0 chr11 42984713 42985190 -78858666 - L1_Mus1 LINE L1 0 6567 6079 6 912 3391 33 0 0 chr11 42985190 42985588 -78858268 + L1_Mus1 LINE L1 5648 6045 -522 6 912 526 288 103 70 chr11 42985840 42986141 -78857715 - MTD LTR MaLR -35 386 91 6 912 278 247 55 0 chr11 42986531 42986604 -78857252 - MIRb SINE MIR -75 193 117 6 912 378 0 0 0 chr11 42986831 42986873 -78856983 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 912 304 287 33 33 chr11 42986915 42987005 -78856851 - B4 SINE B4 -42 250 161 6 912 274 246 0 72 chr11 42987021 42987214 -78856642 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 6 912 325 315 35 43 chr11 42987238 42987354 -78856502 - B1F2 SINE Alu -22 127 13 6 912 799 265 48 0 chr11 42987256 42987445 -78856411 - B4 SINE B4 -94 198 1 6 912 220 373 63 19 chr11 42987567 42987771 -78856085 + MIRb SINE MIR 3 220 -48 6 912 434 303 82 22 chr11 42989134 42989316 -78854540 - MIRb SINE MIR -45 223 31 6 912 301 206 30 80 chr11 42991338 42991438 -78852418 + MER5A1 DNA MER1_type 72 166 0 6 913 339 310 104 15 chr11 42992040 42992299 -78851557 - L1MC5 LINE L1 -60 7901 7620 6 913 362 319 15 84 chr11 42992341 42992543 -78851313 - L1MC5 LINE L1 -442 7519 7332 6 913 234 0 0 0 chr11 42992593 42992619 -78851237 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 913 334 208 69 73 chr11 42992619 42992799 -78851057 - RMER17D2 LTR ERVK -365 444 266 6 913 1247 203 102 23 chr11 42992799 42993102 -78850754 - ORR1E LTR MaLR 0 359 33 6 913 432 269 188 72 chr11 42993152 42993472 -78850384 - L1MC5 LINE L1 -731 7230 6874 6 913 307 326 17 6 chr11 42994172 42994345 -78849511 + (CATA)n Simple_repeat Simple_repeat 4 178 0 6 913 677 320 42 53 chr11 42994764 42995048 -78848808 + B4A SINE B4 12 292 0 6 913 303 281 0 50 chr11 42995260 42995361 -78848495 - MLT1K LTR MaLR -322 273 178 6 913 1345 164 18 9 chr11 42997206 42997428 -78846428 - URR1A DNA MER1_type -2 224 1 6 913 1166 212 148 14 chr11 42998768 42999065 -78844791 - MTD LTR MaLR 0 419 83 6 913 658 294 5 53 chr11 42999547 42999755 -78844101 + B3A SINE B2 1 198 0 6 913 320 228 38 12 chr11 43000512 43000592 -78843264 - MIRc SINE MIR -88 180 99 1 913 194 62 31 0 chr11 43000736 43000768 -78843088 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 913 610 292 67 42 chr11 43000823 43001106 -78842750 + B4A SINE B4 3 292 0 3 913 306 284 12 0 chr11 43001306 43001387 -78842469 - PB1D10 SINE Alu -10 107 26 4 913 482 257 100 6 chr11 43001429 43001609 -78842247 - MER3 DNA MER1_type 0 209 13 5 913 583 220 62 34 chr11 43001670 43001849 -78842007 - Lx8 LINE L1 0 7473 7290 6 913 516 290 10 30 chr11 43001847 43002004 -78841852 + Lx8 LINE L1 6656 6953 -691 7 913 492 283 71 13 chr11 43002486 43002640 -78841216 + Lx8 LINE L1 6789 6951 -522 7 913 484 276 17 0 chr11 43002648 43002764 -78841092 + Lx8 LINE L1 6664 6781 -692 8 913 262 219 14 14 chr11 43002761 43002850 -78841006 + Lx8 LINE L1 6944 7055 -418 7 913 194 401 7 0 chr11 43003296 43003438 -78840418 + MIRb SINE MIR 32 174 -94 9 913 476 326 8 15 chr11 43004684 43004818 -78839038 + ID_B1 SINE B4 3 135 -89 1 913 892 149 8 0 chr11 43004818 43004952 -78838904 + B1_Mus2 SINE Alu 2 136 -11 1 913 1151 112 0 6 chr11 43004952 43005132 -78838724 + (GAA)n Simple_repeat Simple_repeat 1 179 0 1 913 836 134 0 35 chr11 43005133 43005366 -78838490 + GA-rich Low_complexity Low_complexity 1 224 0 1 913 401 253 0 0 chr11 43005374 43005469 -78838387 + ID_B1 SINE B4 127 221 -3 1 913 588 269 39 28 chr11 43005502 43005682 -78838174 + MER20 DNA MER1_type 6 187 -32 1 913 376 229 41 21 chr11 43006066 43006178 -78837678 + PB1D10 SINE Alu 1 115 -2 1 913 1444 288 78 27 chr11 43006207 43006878 -78836978 + Lx7 LINE L1 6819 7679 -17 1 913 744 86 0 0 chr11 43008982 43009087 -78834769 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 913 191 239 90 0 chr11 43009087 43009154 -78834702 - MIR SINE MIR -111 151 79 1 913 230 0 33 0 chr11 43009488 43009518 -78834338 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 913 279 0 0 0 chr11 43010154 43010185 -78833671 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2 913 1198 234 4 4 chr11 43010187 43010436 -78833420 - RLTR33 LTR ERVK -47 631 383 2 913 206 205 51 0 chr11 43010540 43010579 -78833277 - MER91A DNA Tip100 -27 169 129 2 913 274 288 82 59 chr11 43011423 43011593 -78832263 - MLT1D LTR MaLR 0 505 332 2 913 419 326 39 17 chr11 43011668 43011849 -78832007 - MLT1D LTR MaLR -284 221 37 2 913 369 0 0 0 chr11 43012384 43012425 -78831431 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 913 393 22 0 0 chr11 43012977 43013023 -78830833 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 913 1533 194 97 6 chr11 43013303 43013624 -78830232 - MTD LTR MaLR -66 353 4 2 913 1184 178 13 13 chr11 43014253 43014492 -78829364 + Lx4A LINE L1 6813 7051 -7 2 913 414 0 0 0 chr11 43014492 43014538 -78829318 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 2 913 234 0 0 0 chr11 43015814 43015840 -78828016 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 913 216 0 0 0 chr11 43016156 43016180 -78827676 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 913 581 229 254 33 chr11 43016853 43017034 -78826822 + ID_B1 SINE B4 1 221 -3 3 913 231 311 110 87 chr11 43017206 43017470 -78826386 + Charlie8 DNA MER1_type 177 446 -1982 3 913 374 184 0 13 chr11 43017797 43017874 -78825982 + B3A SINE B2 1 76 -122 3 913 1044 121 0 0 chr11 43018797 43018938 -78824918 + B1_Mus1 SINE Alu 2 142 -6 3 913 495 0 0 0 chr11 43018938 43018993 -78824863 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 3 913 790 254 34 14 chr11 43019204 43019412 -78824444 + B3 SINE B2 5 216 0 3 913 292 305 33 25 chr11 43020234 43020355 -78823501 - LTR86A1 LTR ERVL -18 495 374 3 913 284 272 130 0 chr11 43020450 43020542 -78823314 - LTR86A1 LTR ERVL -309 199 96 3 913 456 19 0 0 chr11 43020773 43020826 -78823030 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 913 405 323 75 32 chr11 43020962 43021240 -78822616 - B4A SINE B4 -2 290 1 3 913 450 53 0 0 chr11 43021254 43021311 -78822545 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 913 474 244 8 48 chr11 43022169 43022280 -78821576 + B4A SINE B4 164 269 -23 4 913 279 54 0 0 chr11 43022280 43022317 -78821539 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 913 474 244 8 48 chr11 43022317 43022330 -78821526 + B4A SINE B4 270 282 -10 4 913 189 0 0 0 chr11 43022893 43022914 -78820942 + (A)n Simple_repeat Simple_repeat 1 21 0 4 913 490 305 19 38 chr11 43023220 43023380 -78820476 + RSINE1 SINE B4 3 159 -6 4 913 1235 119 11 0 chr11 43025147 43025323 -78818533 + B2_Mm1t SINE B2 2 179 -14 4 913 318 108 313 43 chr11 43025389 43025504 -78818352 + B2_Mm2 SINE B2 47 192 -3 4 913 180 0 0 0 chr11 43025884 43025904 -78817952 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 913 3177 245 87 69 chr11 43027280 43028713 -78815143 + RMER1A Other Other 1 1028 -2 4 913 243 0 0 0 chr11 43030499 43030526 -78813330 + (A)n Simple_repeat Simple_repeat 1 27 0 4 913 187 313 84 0 chr11 43030961 43031044 -78812812 - L4 LINE RTE -139 1890 1801 5 913 181 338 138 67 chr11 43031515 43031551 -78812305 - L4 LINE RTE -334 1695 1662 5 913 1685 21 0 0 chr11 43031551 43031740 -78812116 - B2_Mm1a SINE B2 -4 189 1 5 913 181 338 138 67 chr11 43031740 43031928 -78811928 - L4 LINE RTE -368 1661 1455 5 913 193 250 17 67 chr11 43032152 43032212 -78811644 - L4 LINE RTE -629 1400 1344 5 913 1236 67 0 0 chr11 43032583 43032763 -78811093 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 913 548 185 333 16 chr11 43032775 43032964 -78810892 - B4A SINE B4 -40 252 4 5 913 801 58 0 0 chr11 43032966 43033069 -78810787 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 5 913 334 273 80 18 chr11 43033215 43033327 -78810529 - PB1D10 SINE Alu -30 119 1 5 913 25 0 0 0 chr11 43033469 43033494 -78810362 + AT_rich Low_complexity Low_complexity 1 25 0 5 913 312 249 144 72 chr11 43033571 43033618 -78810238 + MER102a DNA MER1_type 57 108 -222 5 913 180 0 0 0 chr11 43033618 43033638 -78810218 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 913 312 253 140 73 chr11 43033638 43033811 -78810045 + MER102a DNA MER1_type 107 275 -55 5 913 672 186 0 8 chr11 43034197 43034316 -78809540 + PB1D9 SINE Alu 2 119 -1 5 913 3310 43 5 0 chr11 43034840 43035234 -78808622 - MTA_Mm LTR MaLR 0 396 1 6 913 184 305 0 79 chr11 43036504 43036593 -78807263 - L2 LINE L2 -610 2809 2728 6 913 190 274 0 19 chr11 43038183 43038235 -78805621 + L2c LINE L2 3033 3083 -304 6 913 2358 177 7 30 chr11 43038396 43038827 -78805029 - MTC LTR MaLR 0 421 1 6 913 896 267 44 7 chr11 43040105 43040377 -78803479 + B4A SINE B4 1 282 -10 6 913 204 40 0 0 chr11 43040387 43040412 -78803444 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 913 1284 161 9 22 chr11 43040710 43040938 -78802918 - URR1B DNA MER1_type 0 225 1 6 913 447 350 132 48 chr11 43041471 43041828 -78802028 - MLT1F2 LTR MaLR 0 560 174 6 913 477 50 0 0 chr11 43041845 43041905 -78801951 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 913 227 319 82 16 chr11 43042320 43042502 -78801354 - MER113 DNA MER1_type -8 513 320 6 913 759 251 67 39 chr11 43042507 43042789 -78801067 + B4A SINE B4 3 292 0 7 913 225 350 21 42 chr11 43042912 43043055 -78800801 - MER113 DNA MER1_type -284 237 98 6 913 223 269 82 41 chr11 43043114 43043211 -78800645 + PB1D10 SINE Alu 17 117 0 7 913 236 182 49 98 chr11 43045176 43045298 -78798558 + MER44A DNA MER2_type 109 224 -115 7 913 438 108 0 0 chr11 43045299 43045364 -78798492 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 913 241 366 40 73 chr11 43045547 43045724 -78798132 + B4 SINE B4 80 250 -42 7 913 268 291 93 0 chr11 43046248 43046334 -78797522 + Cheshire DNA MER1_type 1 94 -2326 7 913 237 257 57 0 chr11 43046376 43046446 -78797410 + Cheshire DNA MER1_type 2347 2420 0 7 913 518 63 13 0 chr11 43046658 43046737 -78797119 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 913 297 0 0 0 chr11 43047188 43047221 -78796635 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 913 196 212 176 59 chr11 43049367 43049452 -78794404 + MIRb SINE MIR 43 137 -131 7 913 186 284 71 36 chr11 43050276 43050360 -78793496 - L2b LINE L2 -1 3374 3288 7 913 3296 24 39 0 chr11 43050852 43051233 -78792623 - MTA_Mm LTR MaLR 0 396 1 8 913 9415 26 3 2 chr11 43051235 43052330 -78791526 - MTA_Mm-int LTR MaLR -2 1096 1 8 913 3296 24 39 0 chr11 43052330 43052711 -78791145 - MTA_Mm LTR MaLR 0 396 1 8 913 609 246 15 0 chr11 43052713 43052843 -78791013 + B1_Mur1 SINE Alu 13 144 -5 8 913 1168 314 58 96 chr11 43053253 43054094 -78789762 - L1M2 LINE L1 -180 5667 4800 8 913 605 245 20 50 chr11 43054094 43054296 -78789560 + B3A SINE B2 1 196 -2 8 913 1168 312 46 96 chr11 43054296 43054553 -78789303 - L1M2 LINE L1 -1299 4844 4639 8 913 438 53 0 0 chr11 43054585 43054642 -78789214 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 913 421 193 69 171 chr11 43055074 43055249 -78788607 - B3A SINE B2 -2 193 37 8 913 7535 45 1 2 chr11 43056423 43057337 -78786519 - L1Md_F2 LINE L1 0 6582 5683 8 913 1168 110 81 0 chr11 43057441 43057614 -78786242 + B2_Mm2 SINE B2 2 188 -7 8 913 372 276 16 41 chr11 43058718 43058839 -78785017 - MIRb SINE MIR -125 143 26 8 913 217 315 65 11 chr11 43059196 43059289 -78784567 + MIRc SINE MIR 21 118 -150 8 913 262 253 64 32 chr11 43059455 43059549 -78784307 - MLT1A1 LTR MaLR -12 396 300 9 913 249 108 0 0 chr11 43060465 43060502 -78783354 + (CCA)n Simple_repeat Simple_repeat 1 37 0 9 913 203 329 58 23 chr11 43060736 43060823 -78783033 - MIRc SINE MIR -118 150 61 9 913 1995 196 64 37 chr11 43061557 43061965 -78781891 - MTD LTR MaLR 0 419 1 9 913 795 300 96 36 chr11 43062880 43063129 -78780727 + B4A SINE B4 3 266 -26 9 913 312 27 0 0 chr11 43063133 43063170 -78780686 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 9 913 234 91 0 0 chr11 43063178 43063211 -78780645 + (GA)n Simple_repeat Simple_repeat 1 33 0 9 913 204 368 86 13 chr11 43063230 43063464 -78780392 - MIR SINE MIR -5 257 7 9 913 250 231 104 68 chr11 43064005 43064256 -78779600 - RMER17D LTR ERVK -259 630 371 9 913 455 287 151 108 chr11 43065379 43065769 -78778087 - MLT1A1 LTR MaLR 0 408 2 9 913 1537 147 0 30 chr11 43065948 43066180 -78777676 + URR1B DNA MER1_type 1 225 0 1 913 251 286 52 125 chr11 43066209 43066345 -78777511 + L1M5 LINE L1 5595 5720 -520 1 913 563 174 9 0 chr11 43066347 43066462 -78777394 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 913 495 328 40 35 chr11 43066574 43066773 -78777083 + Tigger5 DNA MER2_type 44 243 -2163 1 913 344 342 9 9 chr11 43066768 43066883 -78776973 + Tigger5 DNA MER2_type 2291 2405 -1 1 913 559 271 113 66 chr11 43066969 43067304 -78776552 - MLT1A LTR MaLR 0 374 24 1 913 696 258 200 4 chr11 43067940 43068220 -78775636 - MTEb LTR MaLR -24 355 21 1 913 375 41 0 0 chr11 43069514 43069563 -78774293 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 913 397 155 136 0 chr11 43069565 43069668 -78774188 + Lx9 LINE L1 7528 7644 0 1 913 180 0 0 0 chr11 43070435 43070455 -78773401 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 1 913 244 242 93 21 chr11 43071455 43071552 -78772304 + MIR SINE MIR 155 258 -4 1 913 3397 128 50 2 chr11 43071704 43072199 -78771657 - RLTR28 LTR ERVL -3 521 3 1 913 338 282 46 92 chr11 43072200 43072395 -78771461 - RLTR23 LTR ERV1 -1 429 244 1 913 993 68 7 39 chr11 43073941 43074094 -78769762 - URR1A DNA MER1_type 0 226 79 1 913 520 279 109 124 chr11 43076151 43076417 -78767439 + B4A SINE B4 31 292 0 1 913 348 171 0 0 chr11 43076433 43076451 -78767405 + polypurine Low_complexity Low_complexity 2 19 0 1 913 189 0 0 0 chr11 43076451 43076472 -78767384 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 913 348 171 0 0 chr11 43076472 43076523 -78767333 + polypurine Low_complexity Low_complexity 20 70 0 1 913 180 231 135 0 chr11 43076659 43076711 -78767145 - MIRb SINE MIR -46 222 164 1 913 291 338 116 14 chr11 43076825 43076963 -78766893 - MLT1H LTR MaLR -222 327 176 1 913 320 300 38 8 chr11 43077068 43077199 -78766657 - MIR SINE MIR -113 149 15 1 913 332 290 62 105 chr11 43078579 43078673 -78765183 - Lx8 LINE L1 -219 7254 7172 1 913 2073 146 80 19 chr11 43078673 43079035 -78764821 - ORR1C2 LTR MaLR 0 384 1 1 913 332 290 62 105 chr11 43079035 43079102 -78764754 - Lx8 LINE L1 -302 7171 7100 1 913 273 300 49 20 chr11 43079178 43079280 -78764576 - MIR SINE MIR -70 138 34 1 913 683 195 461 0 chr11 43079497 43079750 -78764106 + ORR1D2 LTR MaLR 1 370 0 1 913 609 14 0 0 chr11 43079933 43080003 -78763853 + (TC)n Simple_repeat Simple_repeat 1 70 0 1 913 360 64 0 0 chr11 43080003 43080049 -78763807 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 913 2011 52 0 35 chr11 43081774 43082034 -78761822 - L1Md_F2 LINE L1 0 6582 6332 1 913 2435 48 0 3 chr11 43082034 43082329 -78761527 + L1Md_F2 LINE L1 6039 6332 -250 1 913 327 344 11 0 chr11 43082695 43082788 -78761068 - MIRb SINE MIR -112 156 63 1 913 207 375 70 26 chr11 43084391 43084506 -78759350 + MIRc SINE MIR 37 156 -112 1 913 341 342 0 69 chr11 43086151 43086202 -78757654 + L1M4c LINE L1 1579 1623 -4761 1 913 1484 263 22 11 chr11 43086202 43086567 -78757289 - ORR1D2 LTR MaLR 0 370 2 1 913 341 342 0 69 chr11 43086567 43086675 -78757181 + L1M4c LINE L1 1624 1727 -4657 1 913 485 310 32 16 chr11 43086928 43086967 -78756889 + L1_Rod LINE L1 2141 2178 -3669 1 913 189 0 0 0 chr11 43086967 43086988 -78756868 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 913 485 310 32 16 chr11 43086988 43087197 -78756659 + L1_Rod LINE L1 2179 2393 -3454 1 913 459 242 89 57 chr11 43087234 43087392 -78756464 + RSINE1 SINE B4 3 165 0 1 913 665 45 11 0 chr11 43087393 43087482 -78756374 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 1 913 778 246 81 11 chr11 43087591 43087776 -78756080 + B3 SINE B2 18 215 -1 1 913 491 242 144 8 chr11 43087778 43087967 -78755889 + L1M4c LINE L1 2854 3057 -3319 1 913 969 88 0 7 chr11 43087967 43088105 -78755751 + B2_Mm2 SINE B2 2 138 -57 1 913 183 80 0 0 chr11 43088115 43088140 -78755716 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 913 697 277 119 28 chr11 43088145 43088532 -78755324 + L1M4c LINE L1 3044 3465 -2914 1 913 827 214 77 12 chr11 43088527 43088773 -78755083 + Lx9 LINE L1 7383 7644 0 1 913 5057 135 61 9 chr11 43088835 43089592 -78754264 + Lx4A LINE L1 6256 7051 -7 1 913 299 25 25 0 chr11 43089594 43089634 -78754222 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 913 21 0 0 0 chr11 43089774 43089795 -78754061 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 978 157 0 0 chr11 43089806 43089946 -78753910 + B1_Mur4 SINE Alu 5 144 -6 1 913 322 285 56 19 chr11 43089972 43090133 -78753723 + L1_Mur3 LINE L1 3269 3435 -2445 1 913 283 187 116 56 chr11 43090361 43090448 -78753408 + RMER17D LTR ERVK 325 416 -473 1 913 1345 76 40 17 chr11 43090448 43090622 -78753234 - B2_Mm2 SINE B2 -15 180 3 1 913 283 187 116 56 chr11 43090622 43090712 -78753144 + RMER17D LTR ERVK 417 514 -375 1 913 313 294 84 52 chr11 43090712 43090866 -78752990 - MER5A DNA MER1_type -3 186 28 1 913 322 329 102 43 chr11 43091005 43091240 -78752616 + Tigger5 DNA MER2_type 7 255 -2151 1 913 221 349 65 19 chr11 43091606 43091714 -78752142 - L2a LINE L2 -15 3411 3299 1 913 218 179 18 0 chr11 43091847 43091903 -78751953 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 913 900 230 194 18 chr11 43092443 43092726 -78751130 + ORR1D1 LTR MaLR 42 374 0 1 913 290 135 19 19 chr11 43092726 43092779 -78751077 - MIR SINE MIR -113 95 43 1 913 274 333 57 32 chr11 43093161 43093285 -78750571 + MER117 DNA MER1_type 30 156 -41 1 913 195 370 0 48 chr11 43093827 43093932 -78749924 - L2a LINE L2 -1 3425 3326 1 913 590 152 179 0 chr11 43095937 43096049 -78747807 + B1_Mus2 SINE Alu 15 146 -1 1 913 599 122 183 0 chr11 43096075 43096190 -78747666 - B3 SINE B2 -80 136 1 1 913 588 263 12 184 chr11 43096197 43096376 -78747480 - Tigger7 DNA MER2_type -1599 892 752 1 913 871 245 167 12 chr11 43096376 43096628 -78747228 - B4A SINE B4 0 292 2 1 913 588 263 12 184 chr11 43096628 43096769 -78747087 - Tigger7 DNA MER2_type -1740 751 627 1 913 1078 162 17 30 chr11 43096791 43097025 -78746831 - ORR1B1 LTR MaLR 0 394 93 1 913 7829 72 14 1 chr11 43097029 43098360 -78745496 + L1_Mus2 LINE L1 5205 6565 -1 1 913 942 154 152 10 chr11 43098363 43098560 -78745296 - ORR1B1 LTR MaLR -169 225 1 1 913 504 275 58 0 chr11 43098560 43098698 -78745158 - Tigger7 DNA MER2_type -1845 646 501 1 913 8593 27 0 3 chr11 43098698 43099687 -78744169 - L1Md_A LINE L1 -10 6572 5587 1 913 3489 63 2 5 chr11 43099747 43100191 -78743665 + L1Md_F2 LINE L1 5143 5585 -298 1 913 8609 49 2 5 chr11 43100192 43101191 -78742665 + L1Md_F2 LINE L1 5587 6582 0 1 913 2082 166 68 39 chr11 43101574 43101856 -78742000 - ORR1B1 LTR MaLR 0 394 91 1 913 3305 51 0 8 chr11 43101856 43102252 -78741604 + L1Md_F2 LINE L1 6176 6568 -14 1 913 2082 166 68 39 chr11 43102252 43102352 -78741504 - ORR1B1 LTR MaLR -304 90 1 1 913 797 270 220 73 chr11 43103097 43103493 -78740363 - Tigger7 DNA MER2_type -2034 457 4 1 913 560 355 77 55 chr11 43103555 43103912 -78739944 + MLT1H LTR MaLR 92 473 -76 1 913 1147 36 66 0 chr11 43103912 43104049 -78739807 + B1_Mus1 SINE Alu 1 146 -2 1 913 261 326 61 11 chr11 43104049 43104120 -78739736 + MLT1H LTR MaLR 474 548 -1 1 913 339 224 41 0 chr11 43104461 43104559 -78739297 + L1MA9 LINE L1 6144 6245 -67 1 913 1456 236 10 62 chr11 43104576 43104961 -78738895 + MTEa LTR MaLR 15 379 0 1 913 226 188 127 28 chr11 43105309 43105380 -78738476 + MTEa LTR MaLR 279 356 -23 1 913 1241 136 11 0 chr11 43105670 43105846 -78738010 + B2_Mm1t SINE B2 2 179 -14 1 913 236 174 0 21 chr11 43105912 43105959 -78737897 + B2_Mm2 SINE B2 47 92 -103 1 913 355 309 6 63 chr11 43105959 43106118 -78737738 + L1M2 LINE L1 4811 4960 -1183 1 913 11732 118 19 65 chr11 43106118 43109540 -78734316 + L1VL4 LINE L1 549 3767 -147 1 913 21 0 0 0 chr11 43109659 43109680 -78734176 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 952 234 96 13 chr11 43109680 43110042 -78733814 + L1M2 LINE L1 4882 5330 -813 1 913 2178 32 4 4 chr11 43110090 43110341 -78733515 - L1Md_F2 LINE L1 0 6582 6332 1 913 432 188 9 90 chr11 43110347 43110425 -78733431 + L1M2 LINE L1 5390 5462 -841 1 913 3218 74 0 31 chr11 43110425 43110841 -78733015 - MTB_Mm LTR MaLR 0 407 5 1 913 432 188 9 90 chr11 43110841 43110873 -78732983 + L1M2 LINE L1 5463 5491 -812 1 913 768 268 14 81 chr11 43110873 43111084 -78732772 + B3A SINE B2 2 198 0 1 913 591 292 139 13 chr11 43111092 43111394 -78732462 + L1M2 LINE L1 5474 5813 -487 1 913 318 279 158 22 chr11 43111457 43111640 -78732216 + L1MA6 LINE L1 6056 6263 -37 1 913 257 333 62 23 chr11 43111657 43111786 -78732070 + MLT1A1 LTR MaLR 1 134 -231 1 913 279 273 0 98 chr11 43111923 43112045 -78731811 + MLT1A1 LTR MaLR 299 408 0 1 913 510 270 92 48 chr11 43112260 43112466 -78731390 + MLT1A LTR MaLR 3 217 -157 1 913 507 295 96 21 chr11 43112837 43113128 -78730728 - Tigger11a DNA MER2_type -230 505 193 1 913 199 295 68 78 chr11 43114748 43114851 -78729005 + MIR3 SINE MIR 81 182 -26 1 913 318 26 0 0 chr11 43115290 43115329 -78728527 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 913 243 237 0 20 chr11 43115335 43115413 -78728443 - B3A SINE B2 -56 142 1 1 913 1367 198 192 12 chr11 43116624 43116946 -78726910 - Lx9 LINE L1 -924 6720 6341 1 114 36283 47 1 4 chr11 43117223 43122841 -78721015 + L1Md_T LINE L1 1 5589 -297 1 914 8437 41 0 0 chr11 43122841 43123837 -78720019 + L1Md_T LINE L1 5590 6585 0 1 914 567 289 35 40 chr11 43124071 43124316 -78719540 + L1M1 LINE L1 5550 5800 -497 1 914 307 262 243 0 chr11 43124320 43124423 -78719433 - B1F SINE Alu -8 141 14 1 914 335 296 99 0 chr11 43124589 43124731 -78719125 - MER5A DNA MER1_type -5 184 29 1 914 233 356 29 0 chr11 43124879 43124983 -78718873 + PB1D10 SINE Alu 1 107 -10 1 914 771 211 105 30 chr11 43125047 43125247 -78718609 + B3 SINE B2 1 215 -1 1 914 430 328 139 6 chr11 43126028 43126381 -78717475 + L2 LINE L2 485 884 -2535 1 914 215 274 209 40 chr11 43126436 43126713 -78717143 + L2 LINE L2 1177 1500 -1919 1 914 342 238 44 0 chr11 43127968 43128056 -78715800 - Lx6 LINE L1 -185 7275 7203 1 914 939 240 81 76 chr11 43128080 43128155 -78715701 - Lx8 LINE L1 -5 7468 7406 1 914 2344 174 17 7 chr11 43128155 43128571 -78715285 + MTC LTR MaLR 2 421 0 1 914 939 240 81 76 chr11 43128571 43128865 -78714991 - Lx8 LINE L1 -68 7405 7098 1 914 293 328 38 46 chr11 43129430 43129561 -78714295 + MER89 LTR ERV1 379 508 -51 1 914 288 0 0 0 chr11 43129632 43129664 -78714192 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 914 417 288 29 12 chr11 43129676 43129906 -78713950 - B4 SINE B4 -19 273 8 1 914 183 42 0 0 chr11 43129925 43129949 -78713907 + (T)n Simple_repeat Simple_repeat 1 24 0 1 914 402 154 0 0 chr11 43130913 43130991 -78712865 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 914 471 288 118 38 chr11 43131420 43131744 -78712112 + LTR37B LTR ERV1 74 427 -41 2 914 2641 157 2 7 chr11 43131744 43132167 -78711689 - MTC LTR MaLR 0 421 1 2 914 471 288 118 38 chr11 43132167 43132188 -78711668 + LTR37B LTR ERV1 428 447 -21 2 914 228 138 0 25 chr11 43132190 43132234 -78711622 - MIRc SINE MIR -118 158 113 2 914 1274 104 6 6 chr11 43132695 43132869 -78710987 + B2_Mm1t SINE B2 2 175 -18 2 914 308 97 310 26 chr11 43132909 43133025 -78710831 + B2_Mm2 SINE B2 47 195 0 2 914 265 288 78 137 chr11 43133129 43133282 -78710574 + B1F1 SINE Alu 1 144 -5 2 914 417 173 74 0 chr11 43133202 43133283 -78710573 + ID_B1 SINE B4 134 220 -4 2 914 351 0 0 0 chr11 43133679 43133718 -78710138 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 914 325 310 145 0 chr11 43133895 43134040 -78709816 + MER5B DNA MER1_type 1 166 -12 2 914 309 250 31 61 chr11 43134100 43134198 -78709658 + PB1D10 SINE Alu 2 96 -21 2 914 204 279 0 0 chr11 43134218 43134261 -78709595 + polypurine Low_complexity Low_complexity 3 45 0 2 914 511 287 38 22 chr11 43134600 43134785 -78709071 + MER5A DNA MER1_type 1 188 -1 2 914 22 35 0 0 chr11 43134811 43134840 -78709016 + AT_rich Low_complexity Low_complexity 1 29 0 2 914 333 0 0 0 chr11 43134938 43134975 -78708881 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 914 575 289 21 21 chr11 43135156 43135389 -78708467 + L1MB1 LINE L1 4904 5136 -1004 2 914 596 258 237 4 chr11 43135427 43135676 -78708180 + L1MB1 LINE L1 5861 6167 -1 2 914 1252 266 140 16 chr11 43136020 43136530 -78707326 + L1MB4 LINE L1 5580 6150 -30 2 914 607 333 12 18 chr11 43136667 43136832 -78707024 + RSINE1 SINE B4 2 165 0 2 914 352 97 16 16 chr11 43136849 43136912 -78706944 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 914 1939 165 24 3 chr11 43136913 43137248 -78706608 - MTC LTR MaLR -12 409 68 2 914 7454 56 9 4 chr11 43137248 43138178 -78705678 - L1Md_F3 LINE L1 -1 6583 5650 2 914 392 161 62 0 chr11 43138178 43138259 -78705597 - MTC LTR MaLR -335 86 1 2 914 1015 263 44 0 chr11 43138311 43138585 -78705271 - ORR1D1 LTR MaLR -2 372 87 2 914 7005 82 28 2 chr11 43138585 43139542 -78704314 - Lx LINE L1 -3 6651 5670 2 914 438 193 23 0 chr11 43139542 43139630 -78704226 - ORR1D1 LTR MaLR -284 90 1 2 914 351 44 0 0 chr11 43139718 43139763 -78704093 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 914 844 261 200 17 chr11 43140120 43140473 -78703383 + MTD LTR MaLR 1 404 -15 2 914 501 163 0 0 chr11 43141146 43141238 -78702618 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 2 914 7569 11 7 0 chr11 43141425 43142275 -78701581 + L1Md_T LINE L1 4731 5586 -297 2 914 8644 32 0 0 chr11 43142275 43143271 -78700585 + L1Md_T LINE L1 5587 6582 0 2 914 865 232 5 44 chr11 43143406 43143609 -78700247 + B3A SINE B2 2 196 -2 2 914 1350 227 84 45 chr11 43143694 43144049 -78699807 - ORR1D2 LTR MaLR 0 370 2 2 914 411 113 0 0 chr11 43144246 43144308 -78699548 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 2 914 216 0 0 0 chr11 43144343 43144367 -78699489 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 914 572 217 0 139 chr11 43144797 43144963 -78698893 - B1_Mur1 SINE Alu -5 144 2 2 914 253 197 0 16 chr11 43145709 43145771 -78698085 - MTE2b LTR MaLR -2 377 317 2 914 559 136 9 9 chr11 43145776 43145887 -78697969 + GA-rich Low_complexity Low_complexity 2 112 0 2 914 1100 252 55 118 chr11 43145889 43146236 -78697620 - MTE2b LTR MaLR -54 325 1 2 914 261 279 0 29 chr11 43146266 43146336 -78697520 + MER117 DNA MER1_type 121 188 -9 2 914 183 42 0 0 chr11 43146454 43146478 -78697378 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 2 914 267 103 0 0 chr11 43146827 43146866 -78696990 + (TCC)n Simple_repeat Simple_repeat 2 40 0 2 914 3284 69 2 2 chr11 43147536 43147943 -78695913 - MTB_Mm LTR MaLR 0 407 1 2 914 375 268 160 19 chr11 43148024 43148180 -78695676 - MTEa LTR MaLR -196 183 6 2 914 311 279 172 11 chr11 43148227 43148314 -78695542 + PB1D10 SINE Alu 1 101 -16 2 914 836 108 8 0 chr11 43148314 43148444 -78695412 + (GAAA)n Simple_repeat Simple_repeat 1 131 0 2 914 510 211 26 7 chr11 43148444 43148597 -78695259 + GA-rich Low_complexity Low_complexity 1 156 0 2 914 335 270 0 0 chr11 43148671 43148745 -78695111 - L1M5 LINE L1 -458 5666 5593 2 914 207 0 0 0 chr11 43149232 43149255 -78694601 + (A)n Simple_repeat Simple_repeat 1 23 0 2 914 417 319 36 18 chr11 43150059 43150225 -78693631 + B4A SINE B4 1 169 -123 2 914 330 26 0 0 chr11 43150303 43150342 -78693514 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 914 288 0 0 0 chr11 43150342 43150373 -78693483 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 914 501 111 0 12 chr11 43151511 43151593 -78692263 + B2_Mm2 SINE B2 7 87 -108 2 914 396 0 0 0 chr11 43151681 43151725 -78692131 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 914 360 0 0 0 chr11 43152640 43152680 -78691176 + (TAGG)n Simple_repeat Simple_repeat 4 43 0 2 914 1794 110 86 0 chr11 43152684 43152985 -78690871 - IAPEY3_LTR LTR ERVK -5 327 1 2 914 434 221 138 26 chr11 43152999 43153115 -78690741 - ID_B1 SINE B4 -19 205 77 2 914 417 39 0 0 chr11 43153356 43153407 -78690449 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 914 348 340 147 37 chr11 43153482 43153754 -78690102 + MLT1G3 LTR MaLR 283 584 -11 2 914 3599 76 6 0 chr11 43155111 43155582 -78688274 + L1_Mus1 LINE L1 6094 6567 0 2 914 200 258 32 0 chr11 43156073 43156135 -78687721 + (TTGG)n Simple_repeat Simple_repeat 3 66 0 2 914 333 0 0 0 chr11 43156715 43156752 -78687104 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 914 297 109 0 0 chr11 43156754 43156809 -78687047 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 914 491 255 0 62 chr11 43157351 43157497 -78686359 + B1F2 SINE Alu 1 137 -12 2 914 844 59 17 0 chr11 43157510 43157629 -78686227 + (GGA)n Simple_repeat Simple_repeat 1 121 0 2 914 1047 8 0 0 chr11 43159268 43159388 -78684468 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 2 914 4342 217 15 29 chr11 43159399 43160355 -78683501 - Lx9 LINE L1 -181 7463 6522 2 914 456 19 0 0 chr11 43160609 43160662 -78683194 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 914 671 182 0 45 chr11 43160732 43160744 -78683112 - B1_Mur2 SINE Alu -3 146 138 2 914 534 67 0 0 chr11 43160744 43160819 -78683037 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 2 914 671 182 0 45 chr11 43160819 43160938 -78682918 - B1_Mur2 SINE Alu -12 137 21 2 914 261 0 0 0 chr11 43161231 43161260 -78682596 + (A)n Simple_repeat Simple_repeat 1 29 0 2 914 1038 141 33 0 chr11 43161292 43161476 -78682380 + URR1A DNA MER1_type 37 226 0 2 914 491 292 160 20 chr11 43162826 43163178 -78680678 - MTD LTR MaLR -15 404 3 2 914 467 178 178 0 chr11 43163522 43163623 -78680233 + ID_B1 SINE B4 102 220 -4 2 914 1066 85 146 0 chr11 43164660 43164824 -78679032 + B2_Mm2 SINE B2 3 190 -5 2 914 2913 123 40 12 chr11 43166049 43166552 -78677304 + RLTR11A LTR ERVK 10 526 -2 2 914 244 310 76 17 chr11 43166835 43166953 -78676903 - MER5A DNA MER1_type -5 184 60 2 914 197 313 8 57 chr11 43168031 43168153 -78675703 - L3 LINE CR1 -736 3753 3638 2 914 1392 86 0 11 chr11 43168466 43168654 -78675202 - B2_Mm2 SINE B2 -9 186 1 2 914 429 20 0 0 chr11 43168690 43168740 -78675116 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 2 914 459 292 27 14 chr11 43168752 43168898 -78674958 - B1F SINE Alu -1 148 1 2 914 188 269 197 15 chr11 43169043 43169175 -78674681 - MIRb SINE MIR -100 168 13 2 914 499 232 29 12 chr11 43169470 43169593 -78674263 - B1_Mur2 SINE Alu -1 119 2 2 914 245 333 62 0 chr11 43170122 43170203 -78673653 - MLT1L LTR MaLR -490 120 35 2 914 346 270 0 0 chr11 43171181 43171255 -78672601 + RSINE1 SINE B4 2 75 -90 2 914 315 0 0 0 chr11 43171255 43171290 -78672566 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 914 337 261 17 35 chr11 43171955 43172070 -78671786 - MER34A LTR ERV1 -441 130 18 2 914 422 324 34 52 chr11 43172304 43172571 -78671285 + LTR33 LTR ERVL 244 505 -10 2 914 180 297 49 41 chr11 43172657 43172780 -78671076 + MIR SINE MIR 21 144 -64 2 914 243 376 26 0 chr11 43172845 43172962 -78670894 - MER102c DNA MER1_type -57 274 155 2 914 333 254 62 26 chr11 43173009 43173122 -78670734 + PB1D10 SINE Alu 1 117 0 2 914 1020 160 0 0 chr11 43173545 43173775 -78670081 + GA-rich Low_complexity Low_complexity 1 230 0 2 914 563 258 152 13 chr11 43174356 43174592 -78669264 - RMER20B LTR ERVK -235 392 124 2 914 435 38 0 0 chr11 43174621 43174674 -78669182 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 914 463 176 33 0 chr11 43174706 43174797 -78669059 - PB1D9 SINE Alu -21 99 6 2 914 331 273 45 0 chr11 43174721 43174809 -78669047 - B4A SINE B4 -123 169 78 2 914 642 285 134 34 chr11 43175384 43175868 -78667988 - RMER13A LTR ERVK -144 764 183 2 914 3811 211 86 46 chr11 43176075 43176856 -78667000 - Lx7 LINE L1 0 7696 6892 2 914 588 53 0 0 chr11 43176856 43176932 -78666924 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 914 3811 211 86 46 chr11 43176932 43177114 -78666742 - Lx7 LINE L1 -805 6891 6694 2 914 1863 179 66 91 chr11 43177118 43177648 -78666208 + RLTR20B3 LTR ERVK 21 537 -40 2 914 21 0 0 0 chr11 43177651 43177672 -78666184 + AT_rich Low_complexity Low_complexity 1 21 0 2 914 5368 197 13 69 chr11 43177678 43178921 -78664935 - Lx7 LINE L1 -997 6699 5518 2 914 23 0 0 0 chr11 43178928 43178951 -78664905 + AT_rich Low_complexity Low_complexity 1 23 0 2 914 1910 266 84 32 chr11 43178951 43179570 -78664286 - Lx8 LINE L1 -2 7471 6821 2 914 933 8 33 0 chr11 43179857 43179978 -78663878 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 2 914 21 0 0 0 chr11 43180260 43180281 -78663575 + AT_rich Low_complexity Low_complexity 1 21 0 2 914 395 336 21 7 chr11 43180395 43180536 -78663320 + B1F2 SINE Alu 1 143 -6 2 914 320 261 56 13 chr11 43180542 43180627 -78663229 + RSINE1 SINE B4 2 91 -201 3 914 420 262 191 0 chr11 43180634 43180760 -78663096 + RSINE1 SINE B4 3 152 -13 3 914 1385 90 0 26 chr11 43180846 43181039 -78662817 + B2_Mm2 SINE B2 2 189 -6 3 914 755 230 96 40 chr11 43181470 43181912 -78661944 + Lx8 LINE L1 6967 7471 -2 3 914 406 325 127 16 chr11 43182782 43183104 -78660752 + Lx8 LINE L1 7114 7471 -2 3 914 216 322 44 0 chr11 43183402 43183492 -78660364 - MER5A DNA MER1_type -93 96 3 3 914 299 44 22 0 chr11 43183561 43183606 -78660250 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 914 894 238 20 15 chr11 43183711 43183907 -78659949 - B3A SINE B2 -1 197 1 3 914 759 285 50 40 chr11 43183942 43184220 -78659636 + B4A SINE B4 9 289 -3 3 914 932 117 143 30 chr11 43184237 43184405 -78659451 + B2_Mm2 SINE B2 1 187 -8 3 914 3696 203 61 26 chr11 43184970 43185809 -78658047 - Lx7 LINE L1 -25 7671 6804 3 914 1163 245 57 96 chr11 43185888 43186254 -78657602 + MTE2b LTR MaLR 20 371 -8 3 914 644 284 132 52 chr11 43186688 43187052 -78656804 - LTR84a LTR ERVL -364 393 1 3 914 880 302 60 62 chr11 43187210 43187446 -78656410 + MTD LTR MaLR 18 263 -156 3 914 673 212 44 0 chr11 43187446 43187583 -78656273 - B1_Mur1 SINE Alu -6 143 1 3 914 880 302 60 62 chr11 43187583 43187749 -78656107 + MTD LTR MaLR 264 419 0 3 914 339 247 13 0 chr11 43188143 43188220 -78655636 + PB1D10 SINE Alu 2 79 -38 3 914 255 326 23 0 chr11 43188218 43188304 -78655552 + PB1D10 SINE Alu 22 109 -8 3 914 537 293 0 0 chr11 43188962 43189095 -78654761 + B1F1 SINE Alu 1 133 -16 3 914 362 314 7 21 chr11 43189139 43189282 -78654574 - L1MB8 LINE L1 -2 6176 6036 3 914 23 33 0 0 chr11 43189361 43189391 -78654465 + AT_rich Low_complexity Low_complexity 1 30 0 3 914 357 62 0 0 chr11 43189391 43189439 -78654417 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 914 542 238 82 0 chr11 43189442 43189589 -78654267 - B3A SINE B2 -38 160 2 3 914 1228 276 74 16 chr11 43189612 43190043 -78653813 - L1MB8 LINE L1 -467 5711 5256 3 914 317 232 0 0 chr11 43191130 43191199 -78652657 - ID4 SINE ID -13 70 2 3 914 295 303 0 22 chr11 43191217 43191308 -78652548 - PB1D10 SINE Alu -8 109 21 3 914 978 168 3 25 chr11 43192238 43192613 -78651243 + GA-rich Low_complexity Low_complexity 1 366 0 3 914 207 287 145 14 chr11 43193411 43193549 -78650307 - MIR SINE MIR -1 261 106 3 914 201 234 0 0 chr11 43194660 43194724 -78649132 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 914 555 283 113 20 chr11 43195799 43195994 -78647862 + ID_B1 SINE B4 8 220 -4 3 914 304 221 0 117 chr11 43196003 43196080 -78647776 + ID4 SINE ID 3 70 -13 3 914 254 301 31 117 chr11 43196125 43196171 -78647685 + B4 SINE B4 51 85 -207 3 914 505 243 29 0 chr11 43196171 43196274 -78647582 + B1_Mur2 SINE Alu 1 106 -43 3 914 348 316 10 0 chr11 43196562 43196660 -78647196 + PB1D7 SINE Alu 1 99 -21 3 914 552 65 0 0 chr11 43196665 43196742 -78647114 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 914 900 117 0 0 chr11 43197222 43197385 -78646471 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 914 197 83 0 27 chr11 43197648 43197685 -78646171 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 914 537 16 0 0 chr11 43199164 43199226 -78644630 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 3 914 240 291 69 124 chr11 43199928 43200073 -78643783 - MIRm SINE MIR -72 196 60 3 914 814 87 8 0 chr11 43201058 43201184 -78642672 + B1_Mus1 SINE Alu 10 136 -12 3 914 279 0 0 0 chr11 43201184 43201215 -78642641 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 914 406 262 0 19 chr11 43202366 43202471 -78641385 - B3A SINE B2 -86 112 10 3 914 805 213 34 34 chr11 43202527 43202731 -78641125 - B3 SINE B2 -6 210 7 3 914 216 0 0 0 chr11 43202822 43202846 -78641010 + (A)n Simple_repeat Simple_repeat 1 24 0 3 914 3959 196 80 48 chr11 43202944 43203480 -78640376 + L1_Mur3 LINE L1 333 902 -6826 3 914 303 28 0 0 chr11 43203480 43203516 -78640340 + (TAA)n Simple_repeat Simple_repeat 2 37 0 3 914 3959 181 59 35 chr11 43203516 43204039 -78639817 + L1_Mur3 LINE L1 903 1423 -4457 3 914 297 0 0 0 chr11 43204039 43204072 -78639784 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 914 2410 162 30 16 chr11 43204072 43204355 -78639501 + L1_Mur3 LINE L1 1424 1713 -4167 3 914 7216 161 51 114 chr11 43204354 43206111 -78637745 + L1_Mur3 LINE L1 2453 4099 -1781 3 914 538 214 98 8 chr11 43206100 43206232 -78637624 + Lx7 LINE L1 7553 7696 0 3 914 185 65 32 0 chr11 43206241 43206272 -78637584 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3 914 231 244 0 0 chr11 43206313 43206358 -78637498 + polypurine Low_complexity Low_complexity 4 48 0 3 914 1267 122 32 5 chr11 43206914 43207104 -78636752 - B2_Mm2 SINE B2 0 195 1 3 914 333 100 100 0 chr11 43207936 43207996 -78635860 - HAL1-3A_ME LINE L1 -818 2040 1975 3 914 348 24 0 0 chr11 43208045 43208086 -78635770 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 914 210 122 39 39 chr11 43208132 43208183 -78635673 + T-rich Low_complexity Low_complexity 1 51 0 3 914 1176 75 0 0 chr11 43208191 43208337 -78635519 - B1_Mus1 SINE Alu -1 147 2 3 914 701 76 0 9 chr11 43208361 43208467 -78635389 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 914 270 255 65 84 chr11 43209207 43209314 -78634542 - MIR3 SINE MIR -41 167 63 3 914 438 156 21 53 chr11 43209325 43209420 -78634436 - L1_Mur3 LINE L1 -3293 2587 2496 3 914 406 200 96 0 chr11 43209418 43209533 -78634323 + Lx6 LINE L1 6028 6153 -1307 3 914 2264 251 141 12 chr11 43209540 43210136 -78633720 + Lx6 LINE L1 6643 7315 -145 3 914 268 278 0 27 chr11 43210714 43210788 -78633068 - B1_Mur3 SINE Alu -77 72 1 3 914 377 309 0 10 chr11 43210946 43211044 -78632812 - PB1D10 SINE Alu -20 97 1 3 914 314 217 174 0 chr11 43211112 43211181 -78632675 + ID4_ SINE ID 2 82 -1 3 914 300 237 13 0 chr11 43211522 43211598 -78632258 - MLT1A LTR MaLR -275 99 23 3 914 2110 182 101 16 chr11 43211601 43211630 -78632226 - RLTR11A LTR ERVK -1 527 498 3 914 2905 43 3 0 chr11 43211630 43211975 -78631881 - ORR1A1 LTR MaLR 0 346 1 3 914 2110 182 101 16 chr11 43211975 43212431 -78631425 - RLTR11A LTR ERVK -31 497 1 3 914 892 248 24 9 chr11 43212583 43212795 -78631061 - ID_B1 SINE B4 -9 215 1 3 914 355 291 44 39 chr11 43213161 43213343 -78630513 + L2a LINE L2 3244 3426 0 3 914 529 211 114 0 chr11 43213392 43213515 -78630341 - B1_Mus1 SINE Alu -10 138 2 3 914 24 0 0 0 chr11 43213620 43213644 -78630212 + AT_rich Low_complexity Low_complexity 1 24 0 3 914 1504 176 4 20 chr11 43214054 43214408 -78629448 + L1_Mur2 LINE L1 854 1269 -6443 3 914 501 62 0 0 chr11 43215509 43215574 -78628282 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 914 697 317 34 4 chr11 43215598 43215867 -78627989 - B4A SINE B4 -12 280 4 3 914 659 240 16 64 chr11 43216411 43216425 -78627431 - B3 SINE B2 -35 181 168 3 914 459 0 0 0 chr11 43216425 43216476 -78627380 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 914 743 240 16 64 chr11 43216476 43216648 -78627208 - B3A SINE B2 -49 167 4 3 914 888 91 0 29 chr11 43216855 43216991 -78626865 + B2_Mm2 SINE B2 2 133 -62 3 914 929 76 0 8 chr11 43216991 43217123 -78626733 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 3 914 648 187 14 36 chr11 43217125 43217264 -78626592 + B1_Mur3 SINE Alu 1 136 -13 3 914 240 64 0 60 chr11 43217265 43217315 -78626541 + (GGA)n Simple_repeat Simple_repeat 2 48 0 3 914 1100 264 68 97 chr11 43218334 43218787 -78625069 + Lx8 LINE L1 7033 7472 -1 3 914 902 150 201 11 chr11 43219653 43219842 -78624014 - URR1B DNA MER1_type 0 225 1 3 914 348 284 35 0 chr11 43219961 43220077 -78623779 + ID_B1 SINE B4 103 222 -2 3 914 1705 21 0 0 chr11 43220080 43220268 -78623588 + B2_Mm1t SINE B2 2 189 -4 3 914 1301 170 9 13 chr11 43222297 43222523 -78621333 - URR1B DNA MER1_type 0 225 1 3 914 416 95 48 0 chr11 43222925 43223009 -78620847 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 914 1071 74 0 0 chr11 43223038 43223173 -78620683 + B1_Mus1 SINE Alu 1 135 -13 3 914 204 67 0 0 chr11 43223173 43223203 -78620653 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 3 914 348 260 79 50 chr11 43223273 43223475 -78620381 + L1MEc LINE L1 1936 2143 -4257 3 914 688 140 0 0 chr11 43223505 43223612 -78620244 - B1_Mur4 SINE Alu -6 144 38 3 914 519 262 24 48 chr11 43223639 43223807 -78620049 + RSINE1 SINE B4 2 165 0 3 914 378 91 0 0 chr11 43224085 43224140 -78619716 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 914 360 0 0 0 chr11 43224140 43224179 -78619677 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 914 191 235 20 0 chr11 43224184 43224235 -78619621 - MIR3 SINE MIR -48 160 109 3 914 333 0 0 0 chr11 43224594 43224631 -78619225 + (TTC)n Simple_repeat Simple_repeat 3 39 0 3 914 477 34 0 0 chr11 43224631 43224690 -78619166 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 914 239 272 198 58 chr11 43225235 43225356 -78618500 - B4A SINE B4 -146 146 9 3 914 334 314 57 0 chr11 43225364 43225488 -78618368 - MER57C2 LTR ERV1 -58 376 246 3 914 649 175 67 0 chr11 43225981 43226101 -78617755 + B3 SINE B2 1 128 -88 3 914 338 255 102 19 chr11 43226243 43226351 -78617505 + ID_B1 SINE B4 102 218 -6 3 914 239 275 141 5 chr11 43226935 43227048 -78616808 - MIRc SINE MIR -122 146 15 3 914 269 185 31 0 chr11 43227107 43227172 -78616684 + B4 SINE B4 2 68 -224 3 914 983 110 23 6 chr11 43227233 43227407 -78616449 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 3 914 608 97 11 0 chr11 43227407 43227500 -78616356 + (GGGA)n Simple_repeat Simple_repeat 2 95 0 3 914 494 319 19 25 chr11 43227503 43227664 -78616192 + RSINE1 SINE B4 4 163 -2 4 914 225 0 0 0 chr11 43227669 43227694 -78616162 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 914 346 304 36 29 chr11 43227713 43227839 -78616017 + B4 SINE B4 84 214 -78 4 914 920 150 20 7 chr11 43227839 43227987 -78615869 + B1_Mur4 SINE Alu 1 150 0 4 914 346 304 36 29 chr11 43227987 43227999 -78615857 + B4 SINE B4 215 223 -69 4 914 213 94 0 0 chr11 43228050 43228082 -78615774 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 914 1056 306 40 18 chr11 43228140 43228592 -78615264 - Charlie1b DNA MER1_type -45 478 17 4 914 543 194 9 9 chr11 43228976 43229085 -78614771 + PB1D10 SINE Alu 1 109 -8 4 914 378 0 0 0 chr11 43229091 43229133 -78614723 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 914 901 236 90 102 chr11 43229151 43229574 -78614282 + MTD LTR MaLR 3 404 -15 4 914 192 70 0 65 chr11 43229696 43229742 -78614114 + (TTCTC)n Simple_repeat Simple_repeat 2 44 0 4 914 336 255 128 0 chr11 43229874 43229976 -78613880 + MLT1B LTR MaLR 239 353 -37 4 914 1144 142 83 0 chr11 43230406 43230610 -78613246 - URR1A DNA MER1_type 0 226 6 4 914 349 250 178 28 chr11 43231262 43231369 -78612487 + RSINE1 SINE B4 2 124 -41 4 914 297 0 0 0 chr11 43231369 43231402 -78612454 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 914 809 252 48 66 chr11 43231952 43232241 -78611615 + MTEa LTR MaLR 1 284 -95 4 914 798 310 90 18 chr11 43232249 43232693 -78611163 + MTE-int LTR MaLR 2 477 -1103 4 914 209 56 56 0 chr11 43233405 43233411 -78610445 + (CAAAAA)n Simple_repeat Simple_repeat 5 10 0 4 914 1119 83 14 0 chr11 43233411 43233556 -78610300 + B1_Mus1 SINE Alu 2 148 0 4 914 209 56 56 0 chr11 43233556 43233585 -78610271 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 4 914 228 67 0 0 chr11 43234175 43234205 -78609651 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 914 333 0 0 0 chr11 43234205 43234242 -78609614 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 914 1495 59 11 0 chr11 43234858 43235045 -78608811 + B2_Mm1a SINE B2 2 190 -3 4 914 234 0 0 0 chr11 43235158 43235184 -78608672 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 914 1101 56 7 20 chr11 43235197 43235343 -78608513 - B1_Mus1 SINE Alu 0 148 5 4 914 477 184 101 0 chr11 43235866 43235975 -78607881 - PB1D9 SINE Alu 0 120 1 4 914 504 174 0 0 chr11 43236075 43236161 -78607695 - B1_Mur3 SINE Alu 0 149 64 4 914 218 286 63 0 chr11 43236655 43236718 -78607138 + RSINE1 SINE B4 82 148 -17 4 914 369 0 0 0 chr11 43236735 43236776 -78607080 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 914 751 208 58 11 chr11 43236822 43236969 -78606887 + B3 SINE B2 16 171 -45 4 914 1812 128 104 3 chr11 43236969 43237266 -78606590 + ORR1A2 LTR MaLR 1 327 0 4 914 751 208 58 11 chr11 43237266 43237308 -78606548 + B3 SINE B2 172 213 -3 4 914 347 230 58 0 chr11 43237685 43237772 -78606084 - B1F1 SINE Alu -57 92 1 4 914 369 173 27 0 chr11 43238008 43238083 -78605773 + B3 SINE B2 1 77 -139 4 914 639 236 13 39 chr11 43238442 43238596 -78605260 + RSINE1 SINE B4 16 165 0 4 914 628 194 113 0 chr11 43238734 43238858 -78604998 + B1_Mur1 SINE Alu 6 143 -6 4 914 557 259 14 0 chr11 43238893 43239040 -78604816 + ID_B1 SINE B4 39 187 -37 4 914 311 283 80 10 chr11 43239408 43239508 -78604348 + ID_B1 SINE B4 102 208 -16 4 914 188 79 0 50 chr11 43239861 43239901 -78603955 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 914 216 297 76 48 chr11 43240038 43240183 -78603673 - B1F2 SINE Alu 0 149 1 4 914 314 258 72 0 chr11 43240195 43240292 -78603564 - B1F SINE Alu 0 149 46 4 914 245 241 0 0 chr11 43240534 43240588 -78603268 + B3A SINE B2 3 56 -142 4 914 461 152 13 0 chr11 43240585 43240664 -78603192 - B1_Mur2 SINE Alu -34 115 36 4 914 192 77 0 0 chr11 43241066 43241092 -78602764 + (TTC)n Simple_repeat Simple_repeat 2 27 0 4 914 14587 71 9 26 chr11 43241167 43241325 -78602531 - L1VL2 LINE L1 -626 2989 2858 4 914 198 0 0 0 chr11 43241325 43241347 -78602509 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 4 914 1139 55 0 40 chr11 43241347 43241498 -78602358 - B1_Mus2 SINE Alu -2 145 1 4 914 14587 70 10 19 chr11 43241498 43244072 -78599784 - L1VL2 LINE L1 -758 2857 284 4 914 596 264 0 20 chr11 43244264 43244415 -78599441 + B1_Mur1 SINE Alu 1 148 -1 4 914 210 71 0 0 chr11 43244530 43244558 -78599298 + (CATATA)n Simple_repeat Simple_repeat 1 28 0 4 914 328 176 29 14 chr11 43244672 43244741 -78599115 + ID_B1 SINE B4 124 193 -31 4 914 185 74 0 0 chr11 43245404 43245431 -78598425 - L2a LINE L2 -4 3422 3396 4 914 250 299 108 36 chr11 43246204 43246315 -78597541 + B3 SINE B2 9 127 -89 4 914 1206 48 0 13 chr11 43246355 43246504 -78597352 - B1_Mus1 SINE Alu 0 148 2 4 914 26 30 0 0 chr11 43246511 43246544 -78597312 + AT_rich Low_complexity Low_complexity 1 33 0 4 914 280 200 188 59 chr11 43246570 43246587 -78597269 - PB1D9 SINE Alu -1 119 108 4 914 198 0 0 0 chr11 43246587 43246609 -78597247 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 4 914 280 200 188 59 chr11 43246609 43246692 -78597164 - PB1D9 SINE Alu -13 107 6 4 914 241 217 203 0 chr11 43246630 43246699 -78597157 - B4 SINE B4 -127 165 83 4 914 1061 114 0 19 chr11 43246742 43246903 -78596953 + B2_Mm1t SINE B2 3 160 -33 4 914 322 124 404 37 chr11 43246958 43247067 -78596789 + B2_Mm2 SINE B2 47 195 0 4 914 324 0 0 0 chr11 43247140 43247176 -78596680 + (A)n Simple_repeat Simple_repeat 1 36 0 4 914 437 294 67 32 chr11 43248041 43248235 -78595621 - B3A SINE B2 0 198 1 4 914 246 178 0 0 chr11 43248250 43248295 -78595561 + ID_B1 SINE B4 91 135 -89 4 914 183 100 0 0 chr11 43248775 43248805 -78595051 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 914 671 207 159 5 chr11 43248850 43249039 -78594817 - ID_B1 SINE B4 -5 219 2 4 914 219 36 0 0 chr11 43249115 43249143 -78594713 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 914 1179 82 111 12 chr11 43249212 43249384 -78594472 - B2_Mm2 SINE B2 -6 189 1 4 914 519 272 13 75 chr11 43249463 43249622 -78594234 - B1_Mur1 SINE Alu 0 149 1 4 914 674 189 8 8 chr11 43249653 43249776 -78594080 + RSINE1 SINE B4 3 125 -40 4 914 3054 154 39 18 chr11 43249776 43250338 -78593518 + RMER4B LTR ERVK 1 574 -11 4 914 1162 62 7 0 chr11 43250547 43250693 -78593163 + B1_Mus2 SINE Alu 1 147 0 4 914 1104 126 20 40 chr11 43252004 43252202 -78591654 - B2_Mm2 SINE B2 -1 194 1 4 914 673 198 95 0 chr11 43253014 43253140 -78590716 - B1_Mur2 SINE Alu -11 138 1 4 914 659 210 27 34 chr11 43253226 43253374 -78590482 - B1_Mur1 SINE Alu -2 147 1 4 114 243 146 0 0 chr11 43253733 43253774 -78590082 + (TCC)n Simple_repeat Simple_repeat 3 43 0 4 915 456 132 0 0 chr11 43253811 43253894 -78589962 + (T)n Simple_repeat Simple_repeat 1 83 0 4 915 726 74 28 0 chr11 43253897 43254005 -78589851 - B1_Mus1 SINE Alu 0 148 38 4 915 427 235 0 0 chr11 43254230 43254311 -78589545 + URR1B DNA MER1_type 1 81 -144 4 915 383 291 18 0 chr11 43254311 43254421 -78589435 + B3A SINE B2 69 180 -18 4 915 256 239 0 0 chr11 43254577 43254623 -78589233 - ID4_ SINE ID -8 75 30 4 915 333 265 136 29 chr11 43255659 43255799 -78588057 + RSINE1 SINE B4 3 157 -8 4 915 300 338 0 0 chr11 43255835 43255912 -78587944 + B1F SINE Alu 1 77 -72 4 915 275 296 130 0 chr11 43256507 43256615 -78587241 - MLT1H LTR MaLR -369 180 59 4 915 234 0 0 0 chr11 43257007 43257033 -78586823 + (CTG)n Simple_repeat Simple_repeat 1 26 0 4 915 256 213 48 16 chr11 43257514 43257576 -78586280 - L1MC4 LINE L1 -567 7475 7412 4 915 202 188 0 0 chr11 43257578 43257610 -78586246 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 915 340 222 28 0 chr11 43257613 43257685 -78586171 - ID4_ SINE ID -9 74 1 4 915 307 239 269 0 chr11 43258383 43258550 -78585306 - ID_B1 SINE B4 -11 213 2 4 915 237 65 0 0 chr11 43258882 43258913 -78584943 + (GAA)n Simple_repeat Simple_repeat 3 33 0 4 915 201 74 0 0 chr11 43259129 43259156 -78584700 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 915 561 276 0 0 chr11 43259157 43259291 -78584565 - RSINE1 SINE B4 -30 135 2 4 915 285 236 14 27 chr11 43259943 43260017 -78583839 + ID_B1 SINE B4 88 160 -64 4 915 544 246 92 0 chr11 43260013 43260143 -78583713 + ID_B1 SINE B4 82 223 -1 4 915 448 248 269 23 chr11 43261079 43261298 -78582558 + B4 SINE B4 3 275 -17 4 915 245 309 0 12 chr11 43261700 43261782 -78582074 - PB1D7 SINE Alu -39 81 1 4 915 278 246 0 0 chr11 43261726 43261787 -78582069 - ID_B1 SINE B4 -87 137 77 4 915 3535 83 15 2 chr11 43262065 43262534 -78581322 + MT2C_Mm LTR ERVL 1 475 0 4 915 251 274 113 21 chr11 43262583 43262680 -78581176 + B4A SINE B4 3 108 -184 4 915 868 191 28 33 chr11 43262707 43262918 -78580938 - RMER19B LTR ERVK -354 548 339 4 915 937 168 19 0 chr11 43262953 43263108 -78580748 - RMER19B LTR ERVK -689 213 56 4 915 683 146 62 0 chr11 43263085 43263215 -78580641 - RMER19B LTR ERVK -764 138 1 4 915 1801 272 75 42 chr11 43263732 43264415 -78579441 + Charlie11 DNA MER1_type 150 854 -1342 4 915 780 91 0 0 chr11 43264420 43264530 -78579326 + (GAAA)n Simple_repeat Simple_repeat 1 110 0 4 915 677 196 142 15 chr11 43264629 43264826 -78579030 + RLTR11A LTR ERVK 1 222 -306 4 915 2250 131 55 40 chr11 43264817 43265199 -78578657 + RLTR11A LTR ERVK 70 458 -70 4 915 468 0 0 0 chr11 43265199 43265251 -78578605 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 915 2250 131 55 40 chr11 43265251 43265320 -78578536 + RLTR11A LTR ERVK 459 527 -1 4 915 227 256 0 60 chr11 43266044 43266127 -78577729 + B2_Mm2 SINE B2 1 78 -117 5 915 2052 90 33 0 chr11 43266099 43266398 -78577458 - ORR1A2 LTR MaLR -8 319 11 5 915 379 222 12 0 chr11 43266387 43266468 -78577388 + B3A SINE B2 29 110 -88 5 915 240 163 0 0 chr11 43266493 43266536 -78577320 + (ATG)n Simple_repeat Simple_repeat 3 45 0 5 915 190 299 161 23 chr11 43266929 43267059 -78576797 + MIR3 SINE MIR 30 177 -31 5 915 544 279 31 6 chr11 43267322 43267481 -78576375 - RSINE1 SINE B4 0 165 3 5 915 193 187 52 7 chr11 43267517 43267652 -78576204 + (TA)n Simple_repeat Simple_repeat 1 141 0 5 915 40 79 0 0 chr11 43267654 43267743 -78576113 + AT_rich Low_complexity Low_complexity 1 89 0 5 915 27 29 0 0 chr11 43267779 43267813 -78576043 + AT_rich Low_complexity Low_complexity 1 34 0 5 915 206 132 37 19 chr11 43267828 43267882 -78575974 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 5 915 460 277 186 11 chr11 43267977 43268251 -78575605 - LTR50 LTR ERVL -11 784 463 5 915 3473 32 0 130 chr11 43268482 43268983 -78574873 + RLTR10C LTR ERVK 1 436 0 5 915 2854 58 0 0 chr11 43268983 43269326 -78574530 + MMERVK10C-int LTR ERVK 1 343 -7238 5 915 800 194 15 15 chr11 43269324 43269588 -78574268 + MMERVK10C-int LTR ERVK 729 952 -6629 5 915 839 154 279 29 chr11 43269680 43269920 -78573936 + MMERVK10C-int LTR ERVK 312 611 -4795 5 915 360 229 147 40 chr11 43269914 43270064 -78573792 + MMERVK10C-int LTR ERVK 523 688 -5449 5 915 327 158 0 0 chr11 43270051 43270108 -78573748 + MMERVK10C-int LTR ERVK 1089 1145 -4261 5 915 370 111 0 0 chr11 43270113 43270176 -78573680 + MMERVK10C-int LTR ERVK 1885 1947 -5634 5 915 45435 16 0 10 chr11 43270182 43275261 -78568595 + MMERVK10C-int LTR ERVK 2552 7581 0 5 915 3361 33 12 131 chr11 43275261 43275756 -78568100 + RLTR10C LTR ERVK 1 436 0 5 915 348 24 0 0 chr11 43276516 43276557 -78567299 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 5 915 347 271 34 0 chr11 43277154 43277272 -78566584 + L1M4 LINE L1 2894 3015 -3131 5 915 306 247 11 80 chr11 43277272 43277290 -78566566 + B4A SINE B4 71 82 -210 5 915 708 128 23 39 chr11 43277290 43277420 -78566436 + B1_Mur2 SINE Alu 1 128 -21 5 915 909 46 11 55 chr11 43277447 43277630 -78566226 + (GAGAA)n Simple_repeat Simple_repeat 5 179 0 5 915 285 147 274 0 chr11 43277657 43277759 -78566097 + L1M4 LINE L1 3095 3224 -2922 5 915 5709 140 31 57 chr11 43277796 43278673 -78565183 - MYSERV16_I-int LTR ERVK -115 2211 1357 5 915 1117 96 7 0 chr11 43278673 43278819 -78565037 - B1_Mus1 SINE Alu -1 147 1 5 915 5709 154 59 60 chr11 43278819 43279657 -78564199 - MYSERV16_I-int LTR ERVK -970 1356 393 5 915 1487 58 5 11 chr11 43279657 43279847 -78564009 + B2_Mm1a SINE B2 1 189 -4 5 915 2812 162 73 62 chr11 43279847 43279892 -78563964 - MYSERV16_I-int LTR ERVK -1934 392 352 5 915 264 59 0 0 chr11 43279901 43279935 -78563921 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5 915 1046 139 0 6 chr11 43279936 43280095 -78563761 - B2_Mm2 SINE B2 -37 158 1 5 915 2055 188 20 33 chr11 43280096 43280630 -78563226 - MYSERV16_I-int LTR ERVK -1961 365 1 5 915 1077 204 75 0 chr11 43281332 43281533 -78562323 - B3 SINE B2 0 216 1 5 915 300 212 0 0 chr11 43281981 43282047 -78561809 + GA-rich Low_complexity Low_complexity 3 68 0 5 915 234 268 0 35 chr11 43282051 43282109 -78561747 + G-rich Low_complexity Low_complexity 2 57 0 5 915 278 303 74 40 chr11 43282349 43282497 -78561359 - ERVL-int LTR ERVL -2494 3263 3111 5 915 310 259 89 11 chr11 43282664 43282754 -78561102 - ERVL-int LTR ERVL -2904 2853 2757 5 915 189 0 0 0 chr11 43282809 43282830 -78561026 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 915 198 0 0 0 chr11 43282853 43282875 -78560981 + (T)n Simple_repeat Simple_repeat 1 22 0 5 915 318 329 73 13 chr11 43283404 43283418 -78560438 - B4 SINE B4 -51 241 86 5 915 514 219 0 105 chr11 43283418 43283551 -78560305 - PB1D7 SINE Alu -1 119 1 5 915 424 128 23 11 chr11 43283594 43283681 -78560175 + T-rich Low_complexity Low_complexity 4 91 0 5 915 213 108 0 0 chr11 43284209 43284246 -78559610 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 915 227 286 76 76 chr11 43284426 43284457 -78559399 - B1_Mur4 SINE Alu 0 150 123 5 915 519 45 0 0 chr11 43284457 43284523 -78559333 + (TTGG)n Simple_repeat Simple_repeat 2 67 0 5 915 238 267 59 51 chr11 43284523 43284569 -78559287 - B1_Mm SINE Alu -28 122 3 5 915 246 265 14 56 chr11 43284569 43284641 -78559215 - ID_B1 SINE B4 -72 152 84 5 915 300 250 0 30 chr11 43286043 43286109 -78557747 - L1MEg LINE L1 -4132 1952 1889 5 915 1056 39 8 0 chr11 43286112 43286241 -78557615 - B1_Mus2 SINE Alu 0 147 18 5 915 418 179 19 112 chr11 43286146 43286253 -78557603 - MT2B LTR ERVL -337 264 168 5 915 342 0 0 0 chr11 43286354 43286392 -78557464 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 915 645 14 0 0 chr11 43286955 43287029 -78556827 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 915 276 100 0 0 chr11 43287172 43287212 -78556644 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 915 558 0 0 0 chr11 43287386 43287448 -78556408 + (CTA)n Simple_repeat Simple_repeat 3 64 0 5 915 180 186 22 65 chr11 43288052 43288098 -78555758 - L2b LINE L2 -14 3361 3318 5 915 706 282 18 18 chr11 43288500 43288717 -78555139 - ID_B1 SINE B4 0 224 8 5 915 476 227 6 0 chr11 43289328 43289504 -78554352 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 915 245 109 22 0 chr11 43289518 43289564 -78554292 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 915 338 253 6 0 chr11 43289580 43289754 -78554102 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 915 864 272 3 108 chr11 43289762 43290069 -78553787 - B4 SINE B4 -18 274 38 5 915 182 322 75 90 chr11 43290462 43290595 -78553261 + MIR SINE MIR 16 146 -62 5 915 456 339 98 42 chr11 43290735 43291000 -78552856 - B4 SINE B4 -11 281 2 5 915 353 321 0 0 chr11 43291062 43291146 -78552710 + ID_B1 SINE B4 70 153 -71 5 915 368 194 243 0 chr11 43291172 43291275 -78552581 + B3 SINE B2 51 178 -38 5 915 301 254 230 122 chr11 43291578 43291706 -78552150 + B4A SINE B4 1 149 -16 5 915 225 0 0 0 chr11 43291706 43291731 -78552125 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 915 405 0 0 0 chr11 43291731 43291775 -78552081 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 915 286 254 230 122 chr11 43291775 43291793 -78552063 + RSINE1 SINE B4 150 164 -1 5 915 576 259 23 84 chr11 43291840 43291903 -78551953 + MER33 DNA MER1_type 80 143 -181 5 915 982 240 29 0 chr11 43291903 43292111 -78551745 + B3 SINE B2 1 214 -2 5 915 576 259 23 84 chr11 43292111 43292308 -78551548 + MER33 DNA MER1_type 144 324 0 5 915 677 262 29 83 chr11 43294770 43294789 -78549067 - B3A SINE B2 -5 193 181 5 915 396 0 0 0 chr11 43294789 43294833 -78549023 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 915 677 262 29 83 chr11 43294833 43295017 -78548839 - B3A SINE B2 -18 180 1 5 915 495 0 0 0 chr11 43295638 43295693 -78548163 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 915 288 0 0 0 chr11 43295693 43295724 -78548132 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 915 724 204 11 25 chr11 43295726 43295886 -78547970 - B3 SINE B2 -27 168 17 5 915 411 21 0 0 chr11 43295886 43295934 -78547922 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 915 241 208 57 0 chr11 43295946 43295999 -78547857 - PB1D7 SINE Alu 0 120 65 5 915 582 188 128 0 chr11 43295953 43296070 -78547786 - ID_B1 SINE B4 -7 217 86 5 915 273 321 131 35 chr11 43296378 43296607 -78547249 + MIRb SINE MIR 1 251 -17 5 915 257 109 22 0 chr11 43297237 43297283 -78546573 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 5 915 366 259 0 12 chr11 43297392 43297474 -78546382 + ID4 SINE ID 2 82 -1 5 915 351 286 54 31 chr11 43298035 43298165 -78545691 + MER5A DNA MER1_type 18 150 -39 5 915 265 287 45 76 chr11 43298239 43298371 -78545485 + MIRb SINE MIR 10 137 -131 5 915 1414 146 23 0 chr11 43298857 43299076 -78544780 - URR1B DNA MER1_type 0 225 2 5 915 342 188 10 19 chr11 43299134 43299237 -78544619 + CT-rich Low_complexity Low_complexity 3 104 0 5 915 292 254 0 0 chr11 43300311 43300370 -78543486 - tRNA-Ala-GCY_ tRNA tRNA 0 75 17 5 915 190 366 0 0 chr11 43300593 43300664 -78543192 + MIR SINE MIR 86 156 -106 5 915 4013 53 0 0 chr11 43300717 43301192 -78542664 - MT2C_Mm LTR ERVL 0 475 1 5 915 330 211 73 25 chr11 43301794 43301894 -78541962 + MTD LTR MaLR 286 419 0 5 915 975 61 122 0 chr11 43301917 43302048 -78541808 + B1_Mus1 SINE Alu 2 148 0 5 915 343 138 0 0 chr11 43302070 43302128 -78541728 - ORR1D1 LTR MaLR -55 329 272 5 915 435 38 0 0 chr11 43302128 43302181 -78541675 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 915 361 125 60 0 chr11 43302182 43302277 -78541579 - ORR1D1 LTR MaLR -211 163 1 5 915 1989 153 28 46 chr11 43302277 43302667 -78541189 - ORR1D1-int LTR MaLR 0 1509 1127 5 915 425 305 8 8 chr11 43302666 43302785 -78541071 - MT2A LTR ERVL -83 450 332 5 915 465 270 131 7 chr11 43302819 43302972 -78540884 - MTEa LTR MaLR -207 172 1 5 915 362 264 55 23 chr11 43303211 43303339 -78540517 + ID_B1 SINE B4 84 215 -9 5 915 183 258 69 83 chr11 43303482 43303554 -78540302 - L2b LINE L2 -11 3415 3345 5 915 1026 230 4 47 chr11 43303660 43303764 -78540092 - ID_B1 SINE B4 0 224 122 5 915 333 0 0 0 chr11 43303764 43303801 -78540055 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 915 831 10 0 0 chr11 43303801 43303896 -78539960 + (GA)n Simple_repeat Simple_repeat 2 97 0 5 915 1026 230 4 47 chr11 43303896 43304023 -78539833 - ID_B1 SINE B4 -103 121 3 5 915 185 326 62 52 chr11 43305035 43305132 -78538724 - L2b LINE L2 -24 3351 3254 5 915 215 159 0 43 chr11 43305317 43305363 -78538493 + C-rich Low_complexity Low_complexity 3 46 0 5 915 237 253 62 25 chr11 43305396 43305477 -78538379 - Tigger5 DNA MER2_type 0 2406 2323 5 915 358 308 96 0 chr11 43305587 43305691 -78538165 - Tigger5 DNA MER2_type -2289 117 4 5 915 492 189 8 0 chr11 43305943 43306048 -78537808 + PB1D7 SINE Alu 13 120 0 5 915 740 184 56 0 chr11 43306673 43306798 -78537058 + B1_Mur1 SINE Alu 1 132 -17 5 915 255 314 15 99 chr11 43306702 43306833 -78537023 + MT2B LTR ERVL 194 313 -288 5 915 638 134 160 0 chr11 43306965 43307084 -78536772 - B1_Mur3 SINE Alu -7 142 5 5 915 341 266 65 0 chr11 43307278 43307417 -78536439 + MER96B DNA hAT 14 161 -256 5 915 208 221 0 72 chr11 43307529 43307612 -78536244 + C-rich Low_complexity Low_complexity 5 81 0 5 915 396 0 0 0 chr11 43308205 43308249 -78535607 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 915 611 295 66 84 chr11 43308266 43308540 -78535316 - B4A SINE B4 -22 270 2 5 915 307 239 40 40 chr11 43309488 43309562 -78534294 - L2b LINE L2 -7 3368 3295 5 915 2556 65 6 58 chr11 43309988 43310333 -78533523 + ORR1A2 LTR MaLR 1 327 0 5 915 233 329 117 6 chr11 43310480 43310642 -78533214 - MIR SINE MIR -54 208 29 5 915 340 197 30 0 chr11 43311292 43311358 -78532498 + RLTR16 LTR ERVK 438 505 0 5 915 449 233 137 8 chr11 43311526 43311643 -78532213 - RSINE1 SINE B4 -23 142 11 6 915 2756 190 111 90 chr11 43312016 43312791 -78531065 - RMER13A LTR ERVK 0 860 70 6 915 415 258 71 24 chr11 43312934 43313061 -78530795 - RSINE1 SINE B4 -17 148 16 6 915 494 121 31 71 chr11 43313597 43313695 -78530161 + PB1D7 SINE Alu 19 112 -8 6 915 2930 43 3 0 chr11 43313721 43314066 -78529790 - ORR1A1 LTR MaLR 0 346 1 6 915 729 157 0 0 chr11 43314183 43314336 -78529520 + (CA)n Simple_repeat Simple_repeat 2 154 0 6 915 249 83 0 0 chr11 43314492 43314528 -78529328 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 915 549 0 0 0 chr11 43314537 43314598 -78529258 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 915 440 241 11 0 chr11 43314626 43314713 -78529143 + MER63D DNA AcHobo 15 102 -959 6 915 291 28 0 0 chr11 43314732 43314768 -78529088 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 6 915 633 268 46 41 chr11 43314942 43315160 -78528696 + B4A SINE B4 49 267 -25 6 915 342 0 0 0 chr11 43315161 43315199 -78528657 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 915 786 207 0 0 chr11 43315199 43315373 -78528483 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 6 915 499 248 199 78 chr11 43315425 43315591 -78528265 + B3A SINE B2 2 187 -8 6 915 283 351 116 7 chr11 43315672 43315827 -78528029 + MER63B DNA AcHobo 265 436 0 6 915 433 286 137 5 chr11 43315897 43316108 -78527748 + L1MD LINE L1 4924 5162 -984 6 915 282 286 0 0 chr11 43316165 43316228 -78527628 + ID4_ SINE ID 10 72 -11 6 915 882 28 0 0 chr11 43316229 43316338 -78527518 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 915 2357 146 19 100 chr11 43316388 43316869 -78526987 + RLTR31A_Mm LTR ERVK 1 442 -142 6 915 474 258 23 0 chr11 43316901 43317033 -78526823 + L1MD LINE L1 5221 5355 -791 6 915 911 182 75 23 chr11 43317033 43317207 -78526649 - ORR1C2 LTR MaLR 0 384 202 6 915 234 286 84 14 chr11 43317198 43317269 -78526587 + MER63D DNA AcHobo 277 352 -709 6 915 297 313 0 0 chr11 43317438 43317553 -78526303 + (CAG)n Simple_repeat Simple_repeat 3 117 0 6 915 301 212 106 0 chr11 43317581 43317741 -78526115 + (AGATG)n Simple_repeat Simple_repeat 4 180 0 6 915 243 120 151 57 chr11 43317751 43317910 -78525946 + (CAGG)n Simple_repeat Simple_repeat 2 175 0 6 915 471 185 54 42 chr11 43317935 43318097 -78525759 - ORR1C1 LTR MaLR -115 259 93 6 915 36 40 0 0 chr11 43318106 43318156 -78525700 + AT_rich Low_complexity Low_complexity 1 50 0 6 915 392 167 154 0 chr11 43318156 43318234 -78525622 - ORR1C1 LTR MaLR -279 95 6 6 915 470 271 189 29 chr11 43318378 43318553 -78525303 + B3 SINE B2 1 203 -13 6 915 526 330 73 32 chr11 43318697 43319041 -78524815 + L1MD1 LINE L1 5498 5855 -387 6 915 618 166 313 0 chr11 43319066 43319229 -78524627 + B3 SINE B2 3 216 0 6 915 388 196 238 82 chr11 43319264 43319386 -78524470 + RSINE1 SINE B4 16 156 -9 6 915 435 38 0 0 chr11 43319388 43319441 -78524415 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 6 915 226 256 89 13 chr11 43319514 43319593 -78524263 - L2a LINE L2 -8 3418 3334 6 915 892 226 32 19 chr11 43320349 43320565 -78523291 - ID_B1 SINE B4 -3 221 3 6 915 621 248 0 8 chr11 43320858 43320984 -78522872 + B3A SINE B2 38 162 -36 6 915 717 87 0 0 chr11 43320987 43321102 -78522754 + (CA)n Simple_repeat Simple_repeat 1 115 0 6 915 1669 21 0 0 chr11 43321232 43321425 -78522431 - L1_Mm LINE L1 -3284 2599 2407 6 915 234 337 0 24 chr11 43322198 43322283 -78521573 - MIR SINE MIR -1 261 179 6 915 346 359 45 36 chr11 43322279 43322499 -78521357 + L2 LINE L2 1112 1333 -2086 6 915 864 193 106 35 chr11 43322594 43322793 -78521063 + B3 SINE B2 4 216 0 6 915 310 233 14 0 chr11 43322818 43322891 -78520965 + B1_Mur4 SINE Alu 65 138 -12 6 915 662 306 10 30 chr11 43322903 43323105 -78520751 + B4A SINE B4 1 198 -94 6 915 226 179 161 37 chr11 43323617 43323672 -78520184 + B4A SINE B4 202 259 -33 6 915 324 0 0 0 chr11 43323672 43323708 -78520148 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 915 226 179 161 37 chr11 43323708 43323733 -78520123 + B4A SINE B4 260 292 0 6 915 279 269 0 0 chr11 43323737 43323867 -78519989 + (CA)n Simple_repeat Simple_repeat 1 130 0 6 915 364 250 0 16 chr11 43323880 43324063 -78519793 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 915 313 362 211 7 chr11 43324138 43324408 -78519448 - L2 LINE L2 -447 2972 2648 6 915 28 0 0 0 chr11 43324423 43324451 -78519405 + AT_rich Low_complexity Low_complexity 1 28 0 6 915 531 0 0 0 chr11 43324586 43324645 -78519211 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 915 644 202 15 30 chr11 43324650 43324783 -78519073 - ID_B1 SINE B4 -14 210 80 6 915 184 286 32 0 chr11 43324790 43324853 -78519003 + MIR SINE MIR 141 205 -57 6 915 560 279 0 60 chr11 43325094 43325243 -78518613 + B1F1 SINE Alu 9 148 -1 6 915 198 143 0 0 chr11 43325255 43325290 -78518566 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 6 915 376 286 0 0 chr11 43325329 43325420 -78518436 + ID_B1 SINE B4 132 222 -2 6 915 347 281 74 46 chr11 43326041 43326257 -78517599 - L1M3e LINE L1 -6665 365 144 6 915 214 359 0 11 chr11 43326651 43326744 -78517112 - L2 LINE L2 -1949 1470 1379 6 915 254 327 35 48 chr11 43326755 43326905 -78516951 - MER5A DNA MER1_type -18 148 1 6 915 189 345 104 59 chr11 43327095 43327690 -78516166 - L2 LINE L2 -2315 1104 483 6 915 370 96 0 19 chr11 43328067 43328120 -78515736 + ORR1A4 LTR MaLR 278 329 0 6 915 1673 153 56 92 chr11 43328225 43328584 -78515272 - ORR1B1 LTR MaLR -8 386 41 6 915 199 285 12 149 chr11 43328735 43328896 -78514960 - L3 LINE CR1 -855 3634 3496 6 915 1767 273 33 85 chr11 43328957 43329559 -78514297 + RMER1B Other Other 1 527 -539 6 915 456 19 0 0 chr11 43329559 43329612 -78514244 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 915 4743 187 65 68 chr11 43329612 43330873 -78512983 + RMER1A Other Other 1 1020 -10 6 915 204 371 19 19 chr11 43330905 43331012 -78512844 - L2c LINE L2 -234 3153 3047 6 915 183 293 107 67 chr11 43331267 43331417 -78512439 - MIR3 SINE MIR -10 198 43 6 915 901 219 26 75 chr11 43331650 43331877 -78511979 + B3 SINE B2 1 216 0 6 915 24 0 0 0 chr11 43331877 43331901 -78511955 + AT_rich Low_complexity Low_complexity 1 24 0 6 915 776 247 0 100 chr11 43331962 43332182 -78511674 - B3A SINE B2 0 198 1 6 915 227 223 21 31 chr11 43332282 43332379 -78511477 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 915 852 243 14 46 chr11 43332379 43332595 -78511261 - B3 SINE B2 0 216 8 6 915 277 301 0 0 chr11 43332729 43332802 -78511054 + ID4_ SINE ID 2 74 -9 6 915 537 16 0 0 chr11 43332804 43332866 -78510990 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 915 398 287 11 0 chr11 43332956 43333043 -78510813 + RSINE1 SINE B4 46 133 -32 6 915 204 40 0 0 chr11 43333104 43333129 -78510727 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 915 202 300 152 35 chr11 43333574 43333719 -78510137 + L2 LINE L2 2523 2684 -735 6 915 273 178 237 32 chr11 43333728 43333821 -78510035 - PB1D10 SINE Alu -5 112 1 6 915 752 146 0 0 chr11 43335004 43335114 -78508742 + B3 SINE B2 2 111 -105 6 915 24 0 0 0 chr11 43335141 43335165 -78508691 + AT_rich Low_complexity Low_complexity 1 24 0 6 915 552 108 19 19 chr11 43335252 43335356 -78508500 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 6 915 601 281 31 108 chr11 43335538 43335714 -78508142 - MER45B DNA Tip100 -5 1035 864 6 915 1062 183 0 86 chr11 43335714 43335935 -78507921 - B3 SINE B2 -13 203 2 6 915 601 281 31 108 chr11 43335935 43336045 -78507811 - MER45B DNA Tip100 -177 863 771 6 915 516 206 22 0 chr11 43336048 43336140 -78507716 + RSINE1 SINE B4 10 103 -62 6 915 840 282 50 4 chr11 43336184 43336426 -78507430 - MER45B DNA Tip100 -258 782 530 6 915 337 318 49 137 chr11 43336799 43337083 -78506773 + MLT1C LTR MaLR 126 461 -6 6 915 714 354 55 13 chr11 43337090 43337399 -78506457 - MER45B DNA Tip100 -622 418 97 6 915 374 284 0 0 chr11 43337401 43337482 -78506374 + ID4_ SINE ID 3 83 0 6 915 221 218 18 18 chr11 43337512 43337568 -78506288 + (TATG)n Simple_repeat Simple_repeat 4 59 0 6 915 216 0 0 0 chr11 43337637 43337661 -78506195 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6 915 193 224 0 95 chr11 43338167 43338241 -78505615 + L3 LINE CR1 1891 1957 -2532 6 915 201 213 0 0 chr11 43338279 43338326 -78505530 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 915 628 240 183 0 chr11 43338505 43338680 -78505176 - ID_B1 SINE B4 -12 212 6 6 915 384 22 0 0 chr11 43338711 43338756 -78505100 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 915 396 250 135 0 chr11 43338777 43338873 -78504983 - B3A SINE B2 -85 113 5 6 915 275 224 0 0 chr11 43339761 43339819 -78504037 - L1ME4a LINE L1 -1 6123 6066 6 915 255 288 0 27 chr11 43339852 43339927 -78503929 + ID4_ SINE ID 2 74 -9 6 915 600 53 0 0 chr11 43339939 43340015 -78503841 + (TCCC)n Simple_repeat Simple_repeat 1 76 0 6 915 387 0 0 0 chr11 43340258 43340301 -78503555 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 915 470 222 0 11 chr11 43340349 43340440 -78503416 - B1F2 SINE Alu -1 148 59 6 915 240 279 58 0 chr11 43340713 43340799 -78503057 + (TTTG)n Simple_repeat Simple_repeat 4 94 0 6 915 231 103 0 0 chr11 43341010 43341049 -78502807 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 915 333 277 10 87 chr11 43341061 43341164 -78502692 - PB1D10 SINE Alu -13 104 10 6 915 641 199 12 93 chr11 43341217 43341378 -78502478 + B1_Mur4 SINE Alu 2 149 -1 6 915 214 347 56 50 chr11 43341426 43341605 -78502251 - MIRb SINE MIR -12 256 77 6 915 25 0 0 0 chr11 43342191 43342216 -78501640 + GC_rich Low_complexity Low_complexity 1 25 0 6 915 409 261 35 26 chr11 43343535 43343649 -78500207 + B1_Mur4 SINE Alu 28 142 -8 6 915 447 224 54 45 chr11 43343996 43344108 -78499748 - B1F SINE Alu -4 145 33 6 915 413 252 130 34 chr11 43344127 43344283 -78499573 - MLT1C LTR MaLR -185 205 20 6 915 23 0 0 0 chr11 43344489 43344512 -78499344 + AT_rich Low_complexity Low_complexity 1 23 0 7 915 1090 220 9 23 chr11 43345619 43345833 -78498023 + B3 SINE B2 1 211 -5 7 915 308 303 41 27 chr11 43345848 43345994 -78497862 + L2a LINE L2 2914 3061 -365 7 915 677 278 126 11 chr11 43346486 43346748 -78497108 + B4A SINE B4 1 292 0 7 915 651 296 0 0 chr11 43346847 43346979 -78496877 + ID_B1 SINE B4 82 213 -11 7 915 566 262 26 65 chr11 43346979 43347002 -78496854 + B1F1 SINE Alu 1 149 0 7 915 373 259 12 0 chr11 43348651 43348732 -78495124 - ID2 SINE ID 0 83 2 7 915 378 308 52 37 chr11 43349419 43349436 -78494420 + ID_B1 SINE B4 80 216 -8 7 915 402 308 59 8 chr11 43349436 43349554 -78494302 + B1F SINE Alu 18 141 -8 7 915 712 248 0 0 chr11 43349579 43349728 -78494128 + B1F SINE Alu 1 149 0 7 915 270 312 13 13 chr11 43349755 43349833 -78494023 + ID4_ SINE ID 3 80 -3 7 915 358 270 117 36 chr11 43350375 43350571 -78493285 - RMER20A LTR ERVK -181 335 124 7 915 504 32 0 0 chr11 43350878 43350940 -78492916 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 915 456 254 17 17 chr11 43351031 43351147 -78492709 - PB1D10 SINE Alu -1 116 1 7 915 324 0 0 0 chr11 43351605 43351641 -78492215 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 915 2431 197 21 55 chr11 43351650 43352213 -78491643 - RLTR20B2 LTR ERVK -10 550 7 7 915 920 208 60 15 chr11 43352283 43352483 -78491373 + B3 SINE B2 4 212 -4 7 915 338 245 87 74 chr11 43352758 43353015 -78490841 - L1ME3A LINE L1 -73 6106 5841 7 915 216 0 0 0 chr11 43353329 43353353 -78490503 + (A)n Simple_repeat Simple_repeat 1 24 0 7 915 339 211 59 84 chr11 43353811 43353930 -78489926 - HAL1-3A_ME LINE L1 -773 2085 1970 7 915 390 74 0 0 chr11 43353931 43353985 -78489871 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 915 716 244 0 0 chr11 43353990 43354117 -78489739 - B1_Mur1 SINE Alu -22 127 1 7 915 397 185 120 0 chr11 43354118 43354210 -78489646 - B4A SINE B4 -65 227 125 7 915 517 240 7 44 chr11 43354521 43354545 -78489311 - B1_Mm SINE Alu 0 147 125 7 915 312 27 0 0 chr11 43354545 43354582 -78489274 + (TTG)n Simple_repeat Simple_repeat 3 39 0 7 915 517 240 7 44 chr11 43354582 43354692 -78489164 - B1_Mm SINE Alu -23 124 18 7 915 1143 71 0 0 chr11 43355005 43355145 -78488711 + B1_Mus1 SINE Alu 2 141 -7 7 915 1151 112 0 6 chr11 43355145 43355325 -78488531 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 915 186 43 0 0 chr11 43355325 43355348 -78488508 + (GAAA)n Simple_repeat Simple_repeat 3 25 0 7 915 284 246 169 92 chr11 43355935 43356119 -78487737 - MIRb SINE MIR -8 260 63 7 915 908 260 10 35 chr11 43356829 43357032 -78486824 + ID_B1 SINE B4 5 202 -22 7 915 323 290 110 58 chr11 43360005 43360159 -78483697 - RSINE1 SINE B4 -2 163 2 7 915 877 235 14 14 chr11 43360832 43361039 -78482817 + B3 SINE B2 4 210 -6 7 915 186 43 0 0 chr11 43361228 43361251 -78482605 + (T)n Simple_repeat Simple_repeat 1 23 0 7 915 28 29 0 0 chr11 43361272 43361307 -78482549 + AT_rich Low_complexity Low_complexity 1 35 0 7 915 291 313 66 15 chr11 43362597 43362733 -78481123 - L2b LINE L2 -5 3370 3228 7 915 757 245 96 5 chr11 43362756 43362953 -78480903 + ID_B1 SINE B4 5 219 -5 7 915 193 300 86 0 chr11 43363667 43363737 -78480119 + L2 LINE L2 2833 2908 -511 7 915 1358 165 32 4 chr11 43363805 43364055 -78479801 - Lx5 LINE L1 0 7050 6794 7 915 652 99 0 0 chr11 43364060 43364151 -78479705 - B1_Mur4 SINE Alu -17 133 43 7 915 255 130 0 85 chr11 43364101 43364160 -78479696 - 4.5SRNA scRNA scRNA -8 86 33 7 915 322 284 34 0 chr11 43364330 43364418 -78479438 + PB1D10 SINE Alu 14 104 -13 7 915 258 32 0 0 chr11 43364635 43364666 -78479190 + (T)n Simple_repeat Simple_repeat 1 31 0 7 915 1276 34 0 0 chr11 43364666 43364812 -78479044 - B1_Mm SINE Alu 0 147 2 7 915 387 267 118 25 chr11 43364880 43364999 -78478857 + B1F SINE Alu 8 137 -12 7 915 282 29 0 0 chr11 43364999 43365034 -78478822 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 7 915 587 275 0 15 chr11 43365045 43365178 -78478678 + ID_B1 SINE B4 92 222 -2 7 915 233 257 29 0 chr11 43365234 43365304 -78478552 + Lx8 LINE L1 7103 7174 -299 7 915 309 26 0 0 chr11 43365939 43365977 -78477879 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 915 261 0 0 0 chr11 43365977 43366005 -78477851 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 915 256 48 30 61 chr11 43366545 43366611 -78477245 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 915 524 182 93 51 chr11 43366623 43366820 -78477036 - L1M4 LINE L1 -685 5495 5295 7 915 441 286 211 0 chr11 43366823 43366984 -78476872 - B3A SINE B2 0 198 4 7 915 704 221 258 0 chr11 43367068 43367231 -78476625 + B3 SINE B2 1 205 -11 7 915 27 0 0 0 chr11 43367232 43367259 -78476597 + AT_rich Low_complexity Low_complexity 1 27 0 7 915 766 144 73 29 chr11 43367285 43367421 -78476435 + B1_Mus1 SINE Alu 7 148 0 7 915 303 113 0 0 chr11 43367936 43367989 -78475867 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 7 915 254 208 57 0 chr11 43368397 43368450 -78475406 + B1_Mus1 SINE Alu 2 57 -91 7 915 256 86 0 0 chr11 43368448 43368483 -78475373 + B1_Mm SINE Alu 107 141 -6 7 915 930 103 0 0 chr11 43368485 43368621 -78475235 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 7 915 901 82 0 47 chr11 43368641 43368769 -78475087 - B1_Mus1 SINE Alu -26 122 1 7 915 238 240 16 62 chr11 43368655 43368784 -78475072 - ORR1B1-int LTR MaLR -755 754 632 7 915 244 160 78 20 chr11 43368821 43368872 -78474984 + B3A SINE B2 6 59 -139 7 915 371 21 0 20 chr11 43368916 43368965 -78474891 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 915 192 125 0 0 chr11 43368983 43369015 -78474841 + (CATG)n Simple_repeat Simple_repeat 1 32 0 7 915 529 256 14 21 chr11 43369410 43369550 -78474306 - B1F1 SINE Alu -1 148 10 7 915 198 0 0 0 chr11 43369563 43369585 -78474271 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 915 229 387 83 2 chr11 43370369 43370597 -78473259 - MIRc SINE MIR -9 259 2 7 915 1440 64 16 21 chr11 43370658 43370849 -78473007 - B2_Mm2 SINE B2 -3 192 3 7 915 3116 203 81 95 chr11 43371007 43371879 -78471977 + RMER13A LTR ERVK 1 860 0 7 915 639 282 118 41 chr11 43372263 43372533 -78471323 + B4A SINE B4 2 292 0 7 915 396 0 0 0 chr11 43372970 43373014 -78470842 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 915 180 200 0 0 chr11 43373033 43373083 -78470773 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 7 915 554 259 44 0 chr11 43373085 43373220 -78470636 - B1F1 SINE Alu -7 142 2 7 915 201 39 0 0 chr11 43373830 43373856 -78470000 + (G)n Simple_repeat Simple_repeat 1 26 0 7 915 596 223 130 11 chr11 43373972 43374149 -78469707 - B3A SINE B2 0 198 1 7 915 792 286 91 67 chr11 43374176 43374461 -78469395 - B4A SINE B4 0 292 1 7 915 531 311 13 68 chr11 43374705 43374940 -78468916 + ID_B1 SINE B4 2 223 -1 7 915 755 190 0 66 chr11 43374793 43374945 -78468911 + B1_Mur1 SINE Alu 8 149 0 7 915 233 167 0 23 chr11 43375190 43375233 -78468623 - MIRc SINE MIR -144 124 83 7 915 506 191 99 106 chr11 43375424 43375565 -78468291 + B1F SINE Alu 10 149 0 7 915 247 209 147 15 chr11 43375579 43375647 -78468209 + ID2 SINE ID 1 77 -6 7 915 323 289 77 39 chr11 43376134 43376289 -78467567 + RSINE1 SINE B4 4 164 -1 7 915 533 242 33 8 chr11 43376830 43376951 -78466905 - RSINE1 SINE B4 -14 151 28 7 915 361 233 0 14 chr11 43377407 43377481 -78466375 - ID4_ SINE ID -9 74 2 7 915 836 303 115 79 chr11 43377507 43378001 -78465855 - MER82 DNA MER2_type -72 581 70 7 915 354 241 81 99 chr11 43378066 43378227 -78465629 + RSINE1 SINE B4 2 159 -6 7 915 435 259 0 0 chr11 43378543 43378624 -78465232 + ID4_ SINE ID 1 81 -2 7 915 217 103 51 0 chr11 43378627 43378666 -78465190 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 7 915 744 251 92 5 chr11 43378703 43378899 -78464957 + B3 SINE B2 4 216 0 7 915 309 287 124 54 chr11 43378963 43379092 -78464764 - PB1D10 SINE Alu 0 149 12 7 915 1370 167 0 9 chr11 43379711 43379934 -78463922 + URR1A DNA MER1_type 1 221 -5 7 915 495 0 0 0 chr11 43380195 43380250 -78463606 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 915 184 29 0 103 chr11 43381117 43381156 -78462700 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 7 915 881 163 221 0 chr11 43381219 43381391 -78462465 + B3 SINE B2 1 210 -6 7 915 636 244 8 0 chr11 43381406 43381537 -78462319 - B3 SINE B2 -84 132 1 7 915 285 241 38 0 chr11 43381597 43381678 -78462178 - ID4_ SINE ID -62 90 8 7 915 201 162 0 0 chr11 43382389 43382426 -78461430 + A-rich Low_complexity Low_complexity 1 37 0 7 915 348 258 74 90 chr11 43382501 43382757 -78461099 - MIR SINE MIR -3 259 8 7 915 220 255 0 0 chr11 43383494 43383541 -78460315 + (TCCG)n Simple_repeat Simple_repeat 4 50 0 7 915 396 0 0 0 chr11 43384422 43384466 -78459390 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 114 233 263 65 75 chr11 43384808 43384915 -78458941 + RLTR1 LTR ERV1 143 248 -376 8 916 24 0 0 0 chr11 43385422 43385446 -78458410 + AT_rich Low_complexity Low_complexity 1 24 0 8 916 630 0 0 0 chr11 43385739 43385809 -78458047 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 916 813 239 11 0 chr11 43386543 43386723 -78457133 + B3 SINE B2 35 216 0 8 916 453 236 123 0 chr11 43386820 43386926 -78456930 + B3 SINE B2 91 209 -7 8 916 2991 35 3 0 chr11 43386967 43387312 -78456544 + ORR1A1 LTR MaLR 1 346 0 8 916 875 136 7 21 chr11 43387421 43387564 -78456292 + B1_Mur4 SINE Alu 10 150 0 8 916 231 340 121 26 chr11 43387618 43388038 -78455818 + L1MC4 LINE L1 7135 7594 -448 8 916 1234 41 7 0 chr11 43388157 43388302 -78455554 + B1_Mus1 SINE Alu 2 147 -1 8 916 632 216 16 0 chr11 43388328 43388453 -78455403 + ID_B1 SINE B4 98 224 0 8 916 181 289 11 57 chr11 43388798 43388886 -78454970 - L2 LINE L2 -1517 1902 1819 8 916 272 246 49 0 chr11 43389695 43389756 -78454100 + tRNA-Ala-GCA tRNA tRNA 3 66 -9 8 916 476 259 176 7 chr11 43389983 43390119 -78453737 + B3A SINE B2 2 160 -38 8 916 1027 109 12 0 chr11 43390127 43390292 -78453564 + (TC)n Simple_repeat Simple_repeat 1 167 0 8 916 492 200 0 0 chr11 43390304 43390434 -78453422 + CT-rich Low_complexity Low_complexity 2 131 0 8 916 665 176 17 50 chr11 43390474 43390594 -78453262 + PB1D9 SINE Alu 5 120 0 8 916 32 43 0 0 chr11 43390612 43390658 -78453198 + AT_rich Low_complexity Low_complexity 1 46 0 8 916 1198 69 0 0 chr11 43390684 43390829 -78453027 - B1_Mus2 SINE Alu 0 147 3 8 916 1024 122 0 26 chr11 43390879 43391030 -78452826 + B1_Mus1 SINE Alu 2 148 0 8 916 196 336 89 32 chr11 43391843 43391966 -78451890 - L2b LINE L2 -219 3156 3027 8 916 2454 99 0 0 chr11 43391999 43392322 -78451534 + ORR1A2 LTR MaLR 5 327 0 8 916 334 350 54 18 chr11 43392498 43392664 -78451192 + LTR16C LTR ERVL 261 432 -57 8 916 796 282 18 26 chr11 43393840 43394066 -78449790 + B4A SINE B4 4 227 -65 8 916 1193 62 7 0 chr11 43394069 43394215 -78449641 + B1_Mm SINE Alu 1 147 0 8 916 243 88 0 0 chr11 43394311 43394345 -78449511 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 916 216 0 0 0 chr11 43394464 43394488 -78449368 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 916 428 319 102 10 chr11 43394508 43394714 -78449142 - B4A SINE B4 -55 237 13 8 916 465 297 80 99 chr11 43394797 43394882 -78448974 - MIRb SINE MIR -6 262 173 8 916 2197 151 117 0 chr11 43394882 43395259 -78448597 + MTC LTR MaLR 1 421 0 8 916 465 297 80 99 chr11 43395259 43395333 -78448523 - MIRb SINE MIR -96 172 109 8 916 1328 108 0 15 chr11 43395333 43395530 -78448326 + B2_Mm2 SINE B2 2 195 0 8 916 465 297 80 99 chr11 43395530 43395631 -78448225 - MIRb SINE MIR -160 108 6 8 916 1179 55 0 14 chr11 43395776 43395912 -78447944 + B1_Mm SINE Alu 1 136 -11 8 916 249 57 0 0 chr11 43395912 43395947 -78447909 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 8 916 1179 55 0 14 chr11 43395947 43395958 -78447898 + B1_Mm SINE Alu 137 146 -1 8 916 288 77 0 0 chr11 43395958 43395997 -78447859 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 8 916 469 232 0 0 chr11 43396039 43396121 -78447735 + RSINE1 SINE B4 53 134 -31 8 916 338 324 27 0 chr11 43397027 43397138 -78446718 + PB1D10 SINE Alu 4 117 0 8 916 1211 56 0 0 chr11 43397170 43397314 -78446542 + B1_Mus1 SINE Alu 4 147 -1 8 916 965 257 19 9 chr11 43397445 43397657 -78446199 - ID_B1 SINE B4 -2 222 9 8 916 693 141 149 0 chr11 43398132 43398253 -78445603 + B1_Mur4 SINE Alu 1 139 -11 8 916 243 0 0 0 chr11 43398253 43398280 -78445576 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 916 451 257 10 0 chr11 43400559 43400660 -78443196 - ID_B1 SINE B4 0 224 123 8 916 633 27 0 0 chr11 43400902 43400977 -78442879 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 916 1003 231 112 67 chr11 43401279 43401596 -78442260 - ORR1E LTR MaLR -13 366 12 8 916 951 301 97 31 chr11 43401720 43402101 -78441755 - MLT2C2 LTR ERVL -54 410 5 8 916 193 323 115 23 chr11 43402103 43402233 -78441623 + MIRc SINE MIR 78 219 -49 8 916 449 255 9 29 chr11 43402315 43402420 -78441436 - PB1 SINE Alu -2 125 23 8 916 333 272 0 80 chr11 43402451 43402539 -78441317 + ID SINE ID 2 82 -142 8 916 328 333 0 92 chr11 43402863 43402982 -78440874 + ID_B1 SINE B4 79 186 -38 8 916 457 324 0 0 chr11 43402877 43402985 -78440871 + PB1D10 SINE Alu 8 115 -2 8 916 394 270 204 49 chr11 43403548 43403672 -78440184 - RCHARR1 DNA MER1_type -649 325 170 8 916 2465 89 3 24 chr11 43403672 43404006 -78439850 - ORR1A2 LTR MaLR 0 327 1 8 916 394 270 204 49 chr11 43404006 43404107 -78439749 - RCHARR1 DNA MER1_type -805 169 65 8 916 541 204 45 18 chr11 43404260 43404370 -78439486 + PB1D9 SINE Alu 2 114 -6 8 916 248 331 37 8 chr11 43404661 43404795 -78439061 - MIR SINE MIR -86 176 39 8 916 259 262 33 0 chr11 43404959 43405020 -78438836 + MIR SINE MIR 81 143 -65 8 916 618 39 0 0 chr11 43405119 43405196 -78438660 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 916 1210 48 7 0 chr11 43405333 43405479 -78438377 + B1_Mus2 SINE Alu 1 147 0 8 916 764 292 42 5 chr11 43405605 43405822 -78438034 - B4A SINE B4 -66 226 2 8 916 410 271 15 15 chr11 43405858 43405989 -78437867 + CT-rich Low_complexity Low_complexity 4 134 0 8 916 782 226 14 0 chr11 43406404 43406550 -78437306 - B1_Mur1 SINE Alu -1 148 1 8 916 236 299 52 110 chr11 43406550 43406597 -78437259 - MT2B2 LTR ERVL -428 156 119 8 916 325 303 0 0 chr11 43406615 43406691 -78437165 - ID4_ SINE ID -3 80 5 8 916 448 257 29 177 chr11 43406704 43406798 -78437058 - B1F SINE Alu 0 149 67 8 916 1001 165 128 15 chr11 43406798 43407001 -78436855 + URR1A DNA MER1_type 1 226 0 8 916 448 257 29 177 chr11 43407001 43407081 -78436775 - B1F SINE Alu -83 66 1 8 916 226 322 135 33 chr11 43407175 43407375 -78436481 + MER113 DNA MER1_type 207 432 -89 8 916 189 0 0 0 chr11 43407375 43407396 -78436460 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 8 916 226 322 135 33 chr11 43407396 43407439 -78436417 + MER113 DNA MER1_type 433 475 -46 8 916 1980 131 51 134 chr11 43407645 43408114 -78435742 - RLTR23 LTR ERV1 0 430 1 8 916 281 340 62 49 chr11 43408471 43408697 -78435159 - RMER15 LTR ERVL -7 568 340 8 916 241 182 18 0 chr11 43408954 43409009 -78434847 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 916 716 268 135 23 chr11 43409009 43409269 -78434587 - B4A SINE B4 -3 289 1 8 916 223 241 198 27 chr11 43409938 43410049 -78433807 - MIRb SINE MIR -46 222 93 8 916 662 219 0 30 chr11 43410253 43410385 -78433471 - RSINE1 SINE B4 -26 139 12 8 916 298 0 0 45 chr11 43410388 43410432 -78433424 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 8 916 225 0 0 0 chr11 43410565 43410590 -78433266 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 916 369 0 0 0 chr11 43410590 43410630 -78433226 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 916 455 248 20 0 chr11 43410649 43410750 -78433106 - PB1D10 SINE Alu -7 110 8 8 916 276 286 44 71 chr11 43410654 43410767 -78433089 - MT2B2 LTR ERVL -323 261 152 8 916 234 303 98 27 chr11 43410834 43410946 -78432910 + MIRc SINE MIR 35 154 -114 8 916 1439 40 17 6 chr11 43411347 43411700 -78432156 + (TAGA)n Simple_repeat Simple_repeat 1 356 0 8 916 502 183 200 0 chr11 43411753 43411873 -78431983 - B1_Mm SINE Alu -1 146 3 8 916 474 18 0 0 chr11 43412555 43412610 -78431246 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 8 916 1066 124 15 106 chr11 43412610 43412766 -78431090 - B2_Mm2 SINE B2 -15 180 42 8 916 1277 41 0 0 chr11 43412766 43412912 -78430944 - B1_Mm SINE Alu 0 147 2 8 916 1066 124 15 106 chr11 43412912 43412953 -78430903 - B2_Mm2 SINE B2 -154 41 1 8 916 573 191 105 7 chr11 43412982 43413150 -78430706 + B3 SINE B2 1 195 0 8 916 775 227 113 5 chr11 43413262 43413457 -78430399 + B3 SINE B2 1 216 0 8 916 346 300 60 52 chr11 43413647 43413763 -78430093 - PB1D10 SINE Alu 0 117 1 8 916 731 238 13 0 chr11 43413763 43413835 -78430021 - ID SINE ID -143 81 8 8 916 366 23 0 0 chr11 43413975 43414018 -78429838 + (TAA)n Simple_repeat Simple_repeat 1 43 0 8 916 832 282 32 0 chr11 43414334 43414550 -78429306 + ID_B1 SINE B4 2 224 0 8 916 666 47 0 0 chr11 43414763 43414849 -78429007 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 8 916 351 296 26 17 chr11 43415589 43415706 -78428150 + PB1D7 SINE Alu 3 120 0 8 916 275 120 67 0 chr11 43415708 43415783 -78428073 + (CAAA)n Simple_repeat Simple_repeat 1 80 0 8 916 411 107 0 0 chr11 43415891 43415966 -78427890 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 916 180 0 0 0 chr11 43415989 43416009 -78427847 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 916 564 252 15 8 chr11 43416182 43416314 -78427542 - ID_B1 SINE B4 -1 223 91 8 916 237 132 0 0 chr11 43416391 43416429 -78427427 + (CAAT)n Simple_repeat Simple_repeat 1 38 0 8 916 978 138 48 42 chr11 43416766 43416955 -78426901 - B2_Mm2 SINE B2 -4 191 2 8 916 466 254 11 1 chr11 43417033 43417139 -78426717 - B1_Mur2 SINE Alu -9 111 6 8 916 471 257 9 0 chr11 43417182 43417291 -78426565 + PB1D7 SINE Alu 5 114 -6 8 916 573 280 30 8 chr11 43417332 43417465 -78426391 + RSINE1 SINE B4 7 142 -23 8 916 408 40 0 0 chr11 43417465 43417515 -78426341 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 916 778 247 79 16 chr11 43418460 43418649 -78425207 - ID_B1 SINE B4 -22 202 2 8 916 217 152 0 0 chr11 43418828 43418861 -78424995 - B1F SINE Alu -35 114 82 8 916 794 289 50 62 chr11 43418906 43419361 -78424495 - Lx7 LINE L1 -2 7471 7016 9 916 354 14 25 76 chr11 43419799 43419878 -78423978 + (TTTTG)n Simple_repeat Simple_repeat 3 77 0 9 916 799 79 52 9 chr11 43419878 43419993 -78423863 - PB1D9 SINE Alu 0 120 1 9 916 353 227 110 63 chr11 43420068 43420195 -78423661 + MTEb LTR MaLR 247 379 0 9 916 430 233 37 1 chr11 43420195 43420277 -78423579 - B1F1 SINE Alu -63 86 2 9 916 419 274 8 58 chr11 43420285 43420405 -78423451 - PB1D10 SINE Alu -3 114 1 9 916 246 282 0 0 chr11 43420423 43420497 -78423359 - L1M5 LINE L1 -2073 5809 5736 9 916 307 170 0 19 chr11 43420628 43420682 -78423174 - Tigger5 DNA MER2_type -2259 147 95 9 916 497 259 75 15 chr11 43420883 43421016 -78422840 + B1_Mur1 SINE Alu 3 143 -6 9 916 830 196 0 0 chr11 43421233 43421366 -78422490 - RLTR14 LTR ERV1 0 382 250 9 916 486 0 0 0 chr11 43421368 43421422 -78422434 + (TC)n Simple_repeat Simple_repeat 2 55 0 9 916 354 107 0 0 chr11 43421422 43421477 -78422379 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 916 800 146 0 15 chr11 43421478 43421610 -78422246 - B3 SINE B2 -86 130 1 9 916 1310 175 57 98 chr11 43421610 43421840 -78422016 - RLTR14 LTR ERV1 -151 231 16 9 916 276 275 108 26 chr11 43422509 43422635 -78421221 - MIRb SINE MIR -22 246 102 9 916 243 0 0 0 chr11 43422701 43422728 -78421128 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 916 332 219 12 24 chr11 43422805 43422889 -78420967 - MLT1A1 LTR MaLR -19 389 307 9 916 511 235 1 0 chr11 43423004 43423106 -78420750 + B1F SINE Alu 6 108 -12 9 916 442 243 213 33 chr11 43423109 43423292 -78420564 + ID_B1 SINE B4 2 217 -7 9 916 431 234 130 9 chr11 43424480 43424588 -78419268 + RSINE1 SINE B4 29 149 -16 9 916 378 0 0 0 chr11 43424589 43424631 -78419225 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 916 29 0 0 0 chr11 43424639 43424668 -78419188 + AT_rich Low_complexity Low_complexity 1 29 0 9 916 1004 207 45 10 chr11 43424675 43424875 -78418981 + B3 SINE B2 9 215 -1 9 916 21 36 0 0 chr11 43424882 43424910 -78418946 + AT_rich Low_complexity Low_complexity 1 28 0 9 916 561 178 0 56 chr11 43424985 43425092 -78418764 + B1F1 SINE Alu 1 101 -48 9 916 481 115 11 11 chr11 43425100 43425188 -78418668 + (GGGGA)n Simple_repeat Simple_repeat 1 88 0 9 916 552 224 152 0 chr11 43425257 43425382 -78418474 - ID_B1 SINE B4 -1 223 80 9 916 855 27 0 67 chr11 43425634 43425754 -78418102 - B1_Mm SINE Alu -2 145 34 9 916 200 297 65 39 chr11 43427167 43427244 -78416612 - L2a LINE L2 0 3426 3348 9 916 376 253 22 11 chr11 43427371 43427463 -78416393 + ID_B1 SINE B4 128 220 -4 9 916 294 294 66 9 chr11 43427463 43427559 -78416297 + PB1D10 SINE Alu 9 99 -21 9 916 224 188 87 72 chr11 43427565 43427634 -78416222 + ID4 SINE ID 3 72 -11 9 916 500 216 55 48 chr11 43428013 43428159 -78415697 - B1F SINE Alu -2 147 1 9 916 763 189 35 0 chr11 43428245 43428388 -78415468 - B1_Mus1 SINE Alu 0 148 1 9 916 1480 62 16 0 chr11 43428395 43428587 -78415269 - B2_Mm2 SINE B2 0 195 1 9 916 441 0 0 0 chr11 43428934 43428983 -78414873 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 9 916 878 103 44 29 chr11 43428984 43429146 -78414710 - B2_Mm2 SINE B2 -17 199 2 9 916 2528 86 0 12 chr11 43429454 43429784 -78414072 - ORR1A3 LTR MaLR 0 326 1 9 916 200 296 68 48 chr11 43429935 43430038 -78413818 - L2a LINE L2 -604 2815 2711 9 916 465 234 136 61 chr11 43430046 43430178 -78413678 - MTEa LTR MaLR -52 327 186 9 916 3870 182 98 29 chr11 43430207 43431092 -78412764 - RMER17B LTR ERVK -12 946 1 9 916 291 323 0 20 chr11 43431358 43431459 -78412397 + C-rich Low_complexity Low_complexity 1 99 0 9 916 296 317 59 10 chr11 43431581 43431683 -78412173 + MER20 DNA MER1_type 6 112 -107 9 916 1639 203 89 29 chr11 43432297 43432677 -78411179 - MTD LTR MaLR -14 405 3 9 916 317 247 24 12 chr11 43432896 43432978 -78410878 + B1F SINE Alu 2 84 -65 9 916 527 174 60 9 chr11 43433098 43433214 -78410642 - Lx4A LINE L1 -29 7029 6908 9 916 235 232 71 0 chr11 43433316 43433372 -78410484 + ID2 SINE ID 14 73 -10 9 916 651 286 0 111 chr11 43433330 43433546 -78410310 + ID_B1 SINE B4 33 224 0 9 916 1086 138 33 6 chr11 43433559 43433741 -78410115 + B2_Mm2 SINE B2 1 187 -8 9 916 1286 14 0 14 chr11 43433751 43433899 -78409957 + B1_Mm SINE Alu 2 147 0 9 916 330 241 53 0 chr11 43433901 43433926 -78409930 + ORR1B1-int LTR MaLR 615 646 -863 9 916 1091 57 0 0 chr11 43433926 43434066 -78409790 + B1_Mus1 SINE Alu 1 140 -8 9 916 198 0 0 0 chr11 43434066 43434088 -78409768 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 9 916 249 340 138 33 chr11 43435044 43435071 -78408785 + ID_B1 SINE B4 57 153 -71 9 916 287 309 208 16 chr11 43435071 43435132 -78408724 + B1F1 SINE Alu 1 69 -80 9 916 1580 199 91 59 chr11 43435132 43435537 -78408319 - MTD LTR MaLR 0 419 2 9 916 249 340 138 33 chr11 43435537 43435600 -78408256 + ID_B1 SINE B4 154 223 -1 9 916 1168 162 81 5 chr11 43435608 43435806 -78408050 + B3 SINE B2 2 214 -2 9 916 24 0 0 0 chr11 43435806 43435830 -78408026 + AT_rich Low_complexity Low_complexity 1 24 0 9 916 557 257 7 68 chr11 43435851 43435997 -78407859 + RSINE1 SINE B4 29 165 0 9 916 1044 197 0 42 chr11 43436013 43436225 -78407631 - RMER10B LTR ERVL 0 398 196 9 916 1109 172 132 31 chr11 43436223 43436504 -78407352 - RMER10B LTR ERVL -144 298 1 9 916 1848 129 120 26 chr11 43436777 43437118 -78406738 - ORR1B1 LTR MaLR -21 373 1 9 916 708 271 5 65 chr11 43437158 43437375 -78406481 + B3 SINE B2 1 204 -12 9 916 675 215 92 0 chr11 43437383 43437513 -78406343 - B1_Mus1 SINE Alu 0 148 7 9 916 315 0 0 0 chr11 43437522 43437557 -78406299 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 916 1014 54 54 0 chr11 43437557 43437687 -78406169 - B1_Mus2 SINE Alu -10 137 1 9 916 263 56 0 0 chr11 43437785 43437821 -78406035 + B1_Mus2 SINE Alu 112 147 0 9 916 198 0 0 0 chr11 43437821 43437843 -78406013 + (A)n Simple_repeat Simple_repeat 1 22 0 9 916 512 248 0 33 chr11 43438288 43438409 -78405447 + PB1D10 SINE Alu 1 117 0 9 916 186 310 107 29 chr11 43438527 43438630 -78405226 - L3 LINE CR1 -3533 956 846 9 916 1144 69 7 0 chr11 43438678 43438823 -78405033 + B1_Mus2 SINE Alu 2 147 0 9 916 994 181 82 5 chr11 43438937 43439131 -78404725 + B3 SINE B2 2 210 -6 9 916 1061 199 19 19 chr11 43439148 43439358 -78404498 + B3 SINE B2 1 210 -6 9 916 336 360 43 43 chr11 43439358 43439585 -78404271 + MER58B DNA MER1_type 114 341 0 9 916 207 385 0 0 chr11 43439702 43439767 -78404089 - L3b LINE CR1 -21 461 397 9 916 198 261 71 14 chr11 43440560 43440630 -78403226 + L2 LINE L2 359 432 -2987 9 916 1730 219 44 29 chr11 43441294 43441707 -78402149 + MTD LTR MaLR 1 419 0 9 916 858 268 19 5 chr11 43442006 43442212 -78401644 + ID_B1 SINE B4 4 212 -12 9 916 237 83 0 0 chr11 43442213 43442249 -78401607 + (TC)n Simple_repeat Simple_repeat 2 37 0 9 916 213 39 0 0 chr11 43442249 43442275 -78401581 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 916 967 134 65 42 chr11 43442283 43442574 -78401282 + MurERV4_19-int LTR ERVK 5312 5763 -17 9 916 1261 41 0 0 chr11 43442581 43442728 -78401128 - B1_Mus1 SINE Alu 0 148 2 9 916 1221 184 236 16 chr11 43442761 43443075 -78400781 + RMER19A LTR ERVK 1 383 -354 9 916 315 233 88 97 chr11 43443086 43443200 -78400656 - ID_B1 SINE B4 -4 220 108 9 916 513 250 8 55 chr11 43443656 43443783 -78400073 + ID_B1 SINE B4 84 204 -20 9 916 3737 179 128 33 chr11 43443850 43444360 -78399496 + RMER1B Other Other 69 656 -410 9 916 2883 59 143 114 chr11 43444360 43444858 -78398998 - RLTR1B LTR ERV1 0 512 1 9 916 3737 179 128 33 chr11 43444858 43445258 -78398598 + RMER1B Other Other 657 1066 0 9 916 512 239 68 8 chr11 43445261 43445379 -78398477 + RSINE1 SINE B4 5 129 -36 9 916 519 293 29 0 chr11 43445487 43445627 -78398229 + B1F2 SINE Alu 1 144 -5 9 916 215 349 121 0 chr11 43446462 43446598 -78397258 + L2b LINE L2 3178 3380 -46 9 916 180 138 0 0 chr11 43446766 43446795 -78397061 - MIRc SINE MIR -163 105 77 9 916 21 0 0 0 chr11 43447964 43447985 -78395871 + AT_rich Low_complexity Low_complexity 1 21 0 9 916 712 92 17 52 chr11 43448030 43448145 -78395711 + PB1D9 SINE Alu 2 112 -8 9 916 936 150 0 13 chr11 43448173 43448309 -78395547 + B1_Mur4 SINE Alu 2 137 -13 9 916 221 0 0 33 chr11 43448309 43448339 -78395517 + (CAAAC)n Simple_repeat Simple_repeat 5 33 0 9 916 936 150 0 13 chr11 43448339 43448351 -78395505 + B1_Mur4 SINE Alu 138 148 -2 9 916 289 321 72 10 chr11 43448378 43448513 -78395343 - MLT1G LTR MaLR -360 235 49 9 916 1259 41 0 0 chr11 43448518 43448665 -78395191 - B1_Mus2 SINE Alu 0 147 1 9 916 24 0 0 0 chr11 43448671 43448695 -78395161 + AT_rich Low_complexity Low_complexity 1 24 0 9 916 464 250 35 62 chr11 43448699 43448844 -78395012 - RSINE1 SINE B4 -8 157 17 9 916 279 0 0 0 chr11 43448847 43448878 -78394978 + (TC)n Simple_repeat Simple_repeat 1 31 0 9 916 225 0 0 0 chr11 43448878 43448902 -78394954 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 916 264 204 91 61 chr11 43449332 43449431 -78394425 + PB1D10 SINE Alu 1 102 -15 9 916 201 243 0 0 chr11 43449435 43449472 -78394384 + polypurine Low_complexity Low_complexity 3 39 0 1 916 180 0 0 0 chr11 43449626 43449646 -78394210 + (CCTA)n Simple_repeat Simple_repeat 3 22 0 1 916 829 291 0 15 chr11 43449722 43449921 -78393935 + ID_B1 SINE B4 29 224 0 1 916 183 100 0 0 chr11 43450089 43450119 -78393737 + (CAGAGA)n Simple_repeat Simple_repeat 3 32 0 1 916 1011 134 0 7 chr11 43450594 43450744 -78393112 - B1_Mur3 SINE Alu 0 149 1 1 916 770 222 81 32 chr11 43450747 43450933 -78392923 - B3A SINE B2 0 198 4 1 916 1345 87 33 0 chr11 43450939 43451122 -78392734 - B2_Mm2 SINE B2 -5 190 2 1 916 253 0 54 0 chr11 43451513 43451550 -78392306 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 1 916 230 81 27 0 chr11 43451559 43451596 -78392260 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1 916 895 175 35 0 chr11 43451629 43451772 -78392084 + B1_Mur4 SINE Alu 2 149 -1 1 916 366 290 0 27 chr11 43451955 43452065 -78391791 + PB1D10 SINE Alu 1 107 -10 1 916 539 275 63 7 chr11 43452184 43452327 -78391529 - B4A SINE B4 -141 151 1 1 916 320 257 112 95 chr11 43452344 43452460 -78391396 + PB1D9 SINE Alu 3 120 0 1 916 351 0 0 0 chr11 43452578 43452617 -78391239 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 916 549 232 0 0 chr11 43452666 43452763 -78391093 - B3 SINE B2 -96 120 24 1 916 2879 121 13 18 chr11 43452763 43453268 -78390588 + LTRIS4 LTR ERV1 1 512 0 1 916 392 202 20 60 chr11 43453297 43453427 -78390429 - MER34A LTR ERV1 -22 549 399 1 916 494 284 81 20 chr11 43453446 43453644 -78390212 + B3 SINE B2 1 210 -6 1 916 1080 68 0 64 chr11 43453662 43453819 -78390037 - B1_Mus1 SINE Alu 0 148 2 1 916 4597 141 129 18 chr11 43453911 43454712 -78389144 + RMER19B LTR ERVK 1 890 -12 1 916 230 115 19 0 chr11 43454747 43454799 -78389057 + (CAAAAA)n Simple_repeat Simple_repeat 1 53 0 1 916 522 258 146 52 chr11 43455065 43455116 -78388740 + ID_B1 SINE B4 12 221 -3 1 916 789 179 14 7 chr11 43455116 43455257 -78388599 + B1_Mur1 SINE Alu 7 148 -1 1 916 422 237 61 10 chr11 43455459 43455557 -78388299 - B1F SINE Alu -31 118 16 1 916 277 281 75 80 chr11 43455470 43455683 -78388173 - MT2B LTR ERVL -341 260 49 1 916 557 280 14 7 chr11 43455616 43455760 -78388096 - ID_B1 SINE B4 -79 145 1 1 916 498 237 16 33 chr11 43455798 43455920 -78387936 - B3 SINE B2 0 216 97 1 916 438 180 0 190 chr11 43455960 43456097 -78387759 - PB1D10 SINE Alu -1 116 6 1 916 357 358 30 40 chr11 43456279 43456477 -78387379 - MLT1K LTR MaLR -394 201 6 1 916 462 301 147 20 chr11 43457319 43457516 -78386340 + ID_B1 SINE B4 2 223 -1 1 916 296 280 22 43 chr11 43457604 43457742 -78386114 + GA-rich Low_complexity Low_complexity 1 135 0 1 916 1960 150 23 76 chr11 43458209 43458624 -78385232 + RMER17C LTR ERVK 2 396 -14 1 916 797 56 0 9 chr11 43458624 43458732 -78385124 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1 916 1960 150 23 76 chr11 43458732 43458748 -78385108 + RMER17C LTR ERVK 397 410 0 1 916 243 261 127 28 chr11 43458792 43458863 -78384993 + ID_B1 SINE B4 147 224 0 1 916 863 214 38 19 chr11 43458868 43459078 -78384778 + B3 SINE B2 3 216 0 1 916 508 284 41 34 chr11 43459128 43459274 -78384582 + ID_B1 SINE B4 78 224 0 1 916 1021 80 15 0 chr11 43459437 43459574 -78384282 + B1_Mur4 SINE Alu 8 146 -4 1 916 207 0 0 0 chr11 43459577 43459600 -78384256 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 916 255 181 14 27 chr11 43459623 43459697 -78384159 + GA-rich Low_complexity Low_complexity 2 74 0 1 916 823 178 37 89 chr11 43459851 43460042 -78383814 + B3A SINE B2 1 181 -17 1 916 587 249 187 8 chr11 43460110 43460361 -78383495 + RMER20B LTR ERVK 127 422 -205 1 916 1016 172 55 6 chr11 43460342 43460523 -78383333 + RMER10B LTR ERVL 209 398 0 1 916 1241 54 0 0 chr11 43460971 43461118 -78382738 + B1_Mm SINE Alu 1 147 0 1 916 1117 231 89 10 chr11 43461143 43461445 -78382411 + RMER1C Other Other 697 1022 -320 1 916 846 307 118 75 chr11 43461466 43461623 -78382233 - RMER13A LTR ERVK -123 737 584 1 916 402 21 0 0 chr11 43461623 43461670 -78382186 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 916 1093 247 96 50 chr11 43461670 43462099 -78381757 - RMER13A LTR ERVK -289 619 98 1 916 268 103 0 0 chr11 43462204 43462243 -78381613 + RMER1C Other Other 1014 1052 -290 1 916 847 58 0 0 chr11 43462243 43462346 -78381510 + B1_Mus1 SINE Alu 34 136 -12 1 916 252 0 0 0 chr11 43462346 43462374 -78381482 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 916 406 248 16 16 chr11 43462378 43462505 -78381351 - MYSERV-int LTR ERVK -1131 5419 5293 1 916 388 229 34 103 chr11 43462505 43462521 -78381335 - RMER4A LTR ERVK -28 557 548 1 916 1215 119 28 0 chr11 43462521 43462697 -78381159 - B2_Mm2 SINE B2 -14 181 1 1 916 600 256 39 64 chr11 43462697 43462887 -78380969 - RMER4A LTR ERVK -38 547 251 1 916 273 183 48 32 chr11 43462887 43462949 -78380907 - MYSERV-int LTR ERVK -1424 5126 5064 1 916 499 219 17 3 chr11 43462949 43463073 -78380783 + RMER1C Other Other 1220 1331 -11 1 916 1232 55 0 0 chr11 43463142 43463288 -78380568 - B1_Mm SINE Alu -1 146 1 1 916 390 239 0 0 chr11 43463289 43463360 -78380496 + B1_Mur4 SINE Alu 14 84 -66 1 916 427 278 55 50 chr11 43463374 43463575 -78380281 + Lx8 LINE L1 7070 7271 -202 1 916 2292 144 78 23 chr11 43463627 43463792 -78380064 + MTC LTR MaLR 1 190 -231 1 916 1114 58 0 35 chr11 43463792 43463935 -78379921 + B1_Mus1 SINE Alu 3 140 -8 1 916 281 24 49 0 chr11 43463935 43463976 -78379880 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 916 2292 144 78 23 chr11 43463976 43464208 -78379648 + MTC LTR MaLR 191 420 -1 1 916 245 290 52 78 chr11 43464307 43464423 -78379433 + RSINE1 SINE B4 15 127 -38 1 916 821 185 20 14 chr11 43464458 43464606 -78379250 + B1_Mur1 SINE Alu 1 149 0 1 916 467 250 0 40 chr11 43464736 43464836 -78379020 - B1_Mur1 SINE Alu -42 107 12 1 916 3638 151 148 71 chr11 43464836 43465663 -78378193 + RMER19B LTR ERVK 1 890 -12 1 916 876 161 14 0 chr11 43465799 43465942 -78377914 - B1_Mur3 SINE Alu 0 149 5 1 916 1042 47 0 92 chr11 43466175 43466338 -78377518 + B1_Mus1 SINE Alu 1 148 0 1 916 194 368 0 14 chr11 43466498 43466567 -78377289 + MIR3 SINE MIR 111 178 -30 1 916 310 250 12 24 chr11 43467165 43467247 -78376609 - ID4_ SINE ID 0 83 3 1 916 288 0 0 0 chr11 43467267 43467299 -78376557 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 916 289 244 32 53 chr11 43467420 43467515 -78376341 - B4A SINE B4 -199 93 1 1 916 531 191 120 15 chr11 43467523 43467656 -78376200 - B1F SINE Alu -2 147 1 1 916 438 175 92 7 chr11 43467779 43467881 -78375975 - PB1D10 SINE Alu -4 123 13 1 916 386 256 0 0 chr11 43467887 43467965 -78375891 - ID_B1 SINE B4 -67 157 80 1 916 241 264 91 36 chr11 43468752 43468862 -78374994 + LTR16A LTR ERVL 36 151 -300 1 916 2006 112 63 33 chr11 43468930 43469263 -78374593 + ORR1B2 LTR MaLR 25 367 0 1 916 1094 110 0 0 chr11 43469295 43469434 -78374422 + B1_Mus1 SINE Alu 1 139 -9 1 916 184 30 0 57 chr11 43469434 43469469 -78374387 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 916 225 255 0 0 chr11 43469476 43469527 -78374329 + LTR16A LTR ERVL 303 353 -98 1 916 357 220 234 18 chr11 43469551 43469662 -78374194 - ID_B1 SINE B4 -4 220 86 1 916 419 202 0 31 chr11 43470462 43470590 -78373266 + CT-rich Low_complexity Low_complexity 1 124 0 1 916 363 316 0 31 chr11 43470632 43470730 -78373126 - PB1D10 SINE Alu -21 96 2 1 916 503 273 27 80 chr11 43470756 43470943 -78372913 - B3A SINE B2 0 198 22 1 916 249 109 0 0 chr11 43471533 43471579 -78372277 + (T)n Simple_repeat Simple_repeat 1 46 0 1 916 663 300 23 91 chr11 43471584 43471657 -78372199 - B4 SINE B4 -74 218 152 1 916 1283 179 173 20 chr11 43471657 43472010 -78371846 + RMER17C LTR ERVK 1 407 -3 1 916 663 300 23 91 chr11 43472010 43472156 -78371700 - B4 SINE B4 -141 151 14 1 916 349 320 47 16 chr11 43472150 43472277 -78371579 - ID_B1 SINE B4 -12 212 82 1 916 333 0 0 0 chr11 43472510 43472547 -78371309 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 916 2979 21 9 0 chr11 43473225 43473559 -78370297 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 916 4634 54 46 16 chr11 43473559 43474195 -78369661 + IAPEz-int LTR ERVK 8 662 -5819 1 916 434 66 0 32 chr11 43474195 43474258 -78369598 + IAPEz-int LTR ERVK 1359 1419 -5062 1 916 1726 110 0 0 chr11 43474263 43474509 -78369347 + IAPEz-int LTR ERVK 2252 2497 -5183 1 916 889 88 24 0 chr11 43474504 43474629 -78369227 + IAPEz-int LTR ERVK 4783 4910 -2770 1 916 20592 11 2 0 chr11 43474631 43476985 -78366871 + IAPEz-int LTR ERVK 4123 6481 0 1 916 2979 21 9 0 chr11 43476985 43477319 -78366537 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 916 630 290 0 58 chr11 43477344 43477549 -78366307 - Lx6 LINE L1 0 7460 7268 1 916 382 284 63 0 chr11 43478030 43478125 -78365731 + PB1D10 SINE Alu 9 109 -8 1 916 2165 144 85 5 chr11 43478172 43478550 -78365306 + RLTR20B2 LTR ERVK 1 408 -152 1 916 333 206 82 0 chr11 43479159 43479232 -78364624 + PB1D7 SINE Alu 34 112 -8 1 916 358 199 24 44 chr11 43479293 43479388 -78364468 + PB1D10 SINE Alu 35 130 -17 1 916 585 28 0 0 chr11 43479441 43479512 -78364344 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 916 603 298 18 6 chr11 43479646 43479815 -78364041 - B4A SINE B4 0 292 122 1 916 342 0 0 0 chr11 43479873 43479911 -78363945 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 916 934 132 15 0 chr11 43479911 43480047 -78363809 - B1_Mur4 SINE Alu -11 139 2 1 916 474 264 72 0 chr11 43480086 43480211 -78363645 - ID_B1 SINE B4 -5 219 86 1 916 337 228 139 0 chr11 43481470 43481571 -78362285 - PB1D10 SINE Alu -1 116 2 1 916 196 291 98 18 chr11 43481829 43481941 -78361915 - MIRm SINE MIR -11 265 145 1 916 354 331 66 8 chr11 43481984 43482106 -78361750 - RSINE1 SINE B4 -33 132 4 1 916 854 159 7 14 chr11 43482152 43482299 -78361557 - B1_Mus1 SINE Alu -2 146 1 1 916 528 237 67 30 chr11 43482326 43482461 -78361395 - ID_B1 SINE B4 -1 223 84 1 916 1158 82 0 0 chr11 43482696 43482842 -78361014 - B1_Mm SINE Alu 0 147 2 1 916 1257 225 48 143 chr11 43482842 43483325 -78360531 - RMER5 LTR ERV1 -41 493 57 1 916 1508 54 5 0 chr11 43483344 43483528 -78360328 + B2_Mm1a SINE B2 2 186 -7 1 916 1098 189 5 19 chr11 43483531 43483746 -78360110 - B3 SINE B2 0 216 5 1 916 390 307 126 0 chr11 43483914 43484041 -78359815 + RSINE1 SINE B4 4 146 -19 1 916 181 0 0 0 chr11 43485195 43485216 -78358640 + L2b LINE L2 3328 3348 -27 1 916 334 349 78 6 chr11 43485544 43485711 -78358145 + MLT1F2 LTR MaLR 130 308 -252 1 916 624 154 168 16 chr11 43485795 43485920 -78357936 + B1F SINE Alu 6 149 0 1 916 480 333 19 12 chr11 43485924 43486085 -78357771 + RSINE1 SINE B4 2 163 -2 1 916 325 290 82 30 chr11 43486133 43486268 -78357588 + B1F2 SINE Alu 3 144 -5 1 916 373 322 133 65 chr11 43486268 43486628 -78357228 - MLT2B3 LTR ERVL -76 439 22 1 916 314 384 14 36 chr11 43487523 43487661 -78356195 + ID_B1 SINE B4 37 171 -53 1 916 553 280 0 68 chr11 43487691 43487852 -78356004 + B3 SINE B2 2 151 -65 1 916 405 0 0 0 chr11 43487976 43488021 -78355835 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 916 711 264 77 12 chr11 43488065 43488234 -78355622 + B3A SINE B2 1 180 -18 1 916 228 67 0 0 chr11 43488400 43488430 -78355426 + (T)n Simple_repeat Simple_repeat 1 30 0 1 916 1245 35 0 0 chr11 43488431 43488576 -78355280 - B1_Mus2 SINE Alu -2 145 1 1 916 246 250 354 0 chr11 43488801 43488897 -78354959 - ID_B1 SINE B4 -13 211 82 1 916 342 296 26 129 chr11 43488938 43488961 -78354895 - ID_B1 SINE B4 0 224 212 1 916 243 0 0 0 chr11 43488961 43488988 -78354868 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 916 342 296 26 129 chr11 43488988 43489119 -78354737 - ID_B1 SINE B4 -13 211 86 1 916 185 0 0 39 chr11 43489183 43489209 -78354647 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 1 916 638 85 0 11 chr11 43489503 43489598 -78354258 + (TTC)n Simple_repeat Simple_repeat 3 96 0 1 916 185 0 40 0 chr11 43490685 43490710 -78353146 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 916 46 19 0 0 chr11 43490710 43490763 -78353093 + AT_rich Low_complexity Low_complexity 1 53 0 1 916 1208 62 0 0 chr11 43490764 43490910 -78352946 - B1_Mus2 SINE Alu -1 146 1 1 916 228 217 0 0 chr11 43491728 43491774 -78352082 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 1 916 281 378 65 24 chr11 43491944 43492283 -78351573 + L2a LINE L2 2930 3282 -144 1 916 498 230 88 73 chr11 43493023 43493061 -78350795 - B1_Mur1 SINE Alu -11 138 110 1 916 3269 33 13 10 chr11 43493061 43493456 -78350400 - MTA_Mm LTR MaLR 0 396 1 1 916 498 230 88 73 chr11 43493456 43493553 -78350303 - B1_Mur1 SINE Alu -40 109 1 1 916 320 287 37 33 chr11 43493551 43493714 -78350142 - B3A SINE B2 -1 197 1 1 916 189 345 159 21 chr11 43493937 43494082 -78349774 + MIRb SINE MIR 53 217 -51 1 916 511 189 0 55 chr11 43494255 43494382 -78349474 + PB1D9 SINE Alu 21 133 -17 1 916 220 324 94 9 chr11 43494413 43494519 -78349337 - B1_Mus1 SINE Alu -1 147 33 1 916 891 53 0 0 chr11 43494542 43494655 -78349201 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 1 916 191 281 10 146 chr11 43494860 43494956 -78348900 + L2a LINE L2 3290 3372 -15 1 916 264 59 0 0 chr11 43495788 43495822 -78348034 + (CCG)n Simple_repeat Simple_repeat 1 34 0 1 916 24 91 0 0 chr11 43496206 43496272 -78347584 + GC_rich Low_complexity Low_complexity 1 66 0 1 916 386 232 12 24 chr11 43497112 43497196 -78346660 - ID4_ SINE ID 0 83 1 1 916 368 260 9 63 chr11 43497214 43497325 -78346531 - PB1D10 SINE Alu -8 109 5 1 916 355 170 35 190 chr11 43497872 43497988 -78345868 - PB1 SINE Alu -7 120 23 1 916 243 197 188 45 chr11 43499030 43499184 -78344672 - L1MC5 LINE L1 -109 7852 7677 1 916 447 250 35 26 chr11 43499278 43499393 -78344463 - PB1D10 SINE Alu -1 116 1 1 916 297 250 13 0 chr11 43499418 43499494 -78344362 - B1F1 SINE Alu 0 149 73 1 916 276 207 11 79 chr11 43499494 43499507 -78344349 - ID_B1 SINE B4 0 224 142 1 916 201 74 0 0 chr11 43500139 43500166 -78343690 + (CACTG)n Simple_repeat Simple_repeat 4 30 0 1 916 243 310 34 42 chr11 43500282 43500400 -78343456 - PB1D10 SINE Alu 0 117 1 2 916 24 0 0 0 chr11 43500426 43500450 -78343406 + AT_rich Low_complexity Low_complexity 1 24 0 3 916 247 286 41 62 chr11 43500462 43500559 -78343297 - PB1D10 SINE Alu -14 103 9 4 916 332 304 43 9 chr11 43500639 43500755 -78343101 - PB1D7 SINE Alu 0 120 1 5 916 586 261 54 12 chr11 43501175 43501342 -78342514 + B3 SINE B2 35 208 -8 6 916 400 320 43 37 chr11 43501785 43501973 -78341883 - ID_B1 SINE B4 0 224 36 7 916 291 228 126 40 chr11 43502206 43502357 -78341499 + RLTR21 LTR ERVK 1069 1232 -340 8 916 515 342 24 58 chr11 43502375 43502583 -78341273 - ID_B1 SINE B4 -6 218 18 9 916 400 213 149 0 chr11 43502710 43502804 -78341052 - RSINE1 SINE B4 -41 124 17 1 916 655 220 0 15 chr11 43502866 43503000 -78340856 - B1_Mur1 SINE Alu -9 140 9 1 916 24 0 0 0 chr11 43503017 43503041 -78340815 + AT_rich Low_complexity Low_complexity 1 24 0 1 916 1263 94 15 64 chr11 43503052 43503256 -78340600 + B2_Mm2 SINE B2 1 194 -1 1 916 451 328 46 26 chr11 43503257 43503451 -78340405 - ID_B1 SINE B4 -17 207 10 1 916 414 57 0 0 chr11 43503791 43503844 -78340012 + (TGG)n Simple_repeat Simple_repeat 1 53 0 1 916 689 183 0 0 chr11 43503846 43503966 -78339890 + B1_Mur3 SINE Alu 17 136 -13 1 916 231 36 0 0 chr11 43504034 43504062 -78339794 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 916 853 207 103 5 chr11 43504132 43504326 -78339530 - B3 SINE B2 -3 213 1 1 916 323 318 98 71 chr11 43504488 43504576 -78339280 - B4 SINE B4 0 292 199 1 916 632 240 124 11 chr11 43504576 43504753 -78339103 - B3A SINE B2 -1 197 1 2 916 323 289 256 41 chr11 43504753 43504914 -78338942 - B4 SINE B4 -94 198 6 1 916 572 176 125 37 chr11 43504959 43505095 -78338761 - B1_Mur2 SINE Alu 0 149 2 2 916 284 292 174 28 chr11 43505179 43505288 -78338568 - ID_B1 SINE B4 -16 208 84 2 916 640 226 113 26 chr11 43505364 43505559 -78338297 - B3 SINE B2 -2 214 3 2 916 25 0 0 0 chr11 43505584 43505609 -78338247 + AT_rich Low_complexity Low_complexity 1 25 0 2 916 886 131 46 0 chr11 43505617 43505747 -78338109 + B1_Mus1 SINE Alu 2 137 -11 2 916 658 265 41 0 chr11 43505781 43505951 -78337905 - B3A SINE B2 -21 177 1 2 916 513 281 95 7 chr11 43506099 43506246 -78337610 - RSINE1 SINE B4 -2 163 4 2 916 263 272 57 80 chr11 43506246 43506334 -78337522 - PB1D10 SINE Alu -6 111 26 2 916 604 181 24 50 chr11 43506361 43506558 -78337298 - B3 SINE B2 0 195 2 2 916 1057 314 58 14 chr11 43506586 43507110 -78336746 - Lx5 LINE L1 0 7460 6506 3 916 734 200 7 27 chr11 43507140 43507289 -78336567 + B1_Mm SINE Alu 1 146 -1 3 916 727 61 261 0 chr11 43507553 43507668 -78336188 + B1_Mus1 SINE Alu 4 148 0 3 916 763 251 67 0 chr11 43507782 43507977 -78335879 - ID_B1 SINE B4 -15 209 2 3 916 260 227 244 32 chr11 43507980 43508103 -78335753 - B1F SINE Alu 0 149 1 3 916 1173 75 0 0 chr11 43508132 43508278 -78335578 - B1_Mm SINE Alu 0 147 2 3 916 366 218 160 49 chr11 43508284 43508511 -78335345 - L1MB2 LINE L1 0 6171 5914 3 916 230 150 25 0 chr11 43508581 43508621 -78335235 - ORR1C2 LTR MaLR -343 41 1 3 916 624 203 87 33 chr11 43508621 43508652 -78335204 - ORR1C2-int LTR MaLR 0 1963 1935 3 916 419 63 0 16 chr11 43508652 43508716 -78335140 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 3 916 1125 73 0 0 chr11 43508716 43508853 -78335003 - B1_Mus1 SINE Alu -10 138 2 3 916 4643 210 101 45 chr11 43508853 43510135 -78333721 - ORR1C2-int LTR MaLR -14 1356 2 3 916 777 170 200 5 chr11 43510159 43510410 -78333446 - ORR1C2 LTR MaLR -38 346 1 3 916 377 242 76 11 chr11 43510653 43510745 -78333111 + PB1D10 SINE Alu 11 108 -9 4 916 207 114 0 28 chr11 43511238 43511274 -78332582 + (TTA)n Simple_repeat Simple_repeat 2 36 0 4 916 578 219 78 47 chr11 43511879 43512071 -78331785 - B3A SINE B2 0 198 1 4 916 234 0 0 0 chr11 43512648 43512674 -78331182 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 916 510 304 47 111 chr11 43512679 43512941 -78330915 - B4A SINE B4 -11 281 37 4 916 371 244 145 8 chr11 43513457 43513581 -78330275 + B1F SINE Alu 9 149 0 4 916 273 212 130 10 chr11 43513813 43513913 -78329943 - PB1D9 SINE Alu -8 112 1 4 916 523 253 6 80 chr11 43513967 43514130 -78329726 - ID_B1 SINE B4 -73 151 1 4 916 29 0 0 0 chr11 43514330 43514359 -78329497 + AT_rich Low_complexity Low_complexity 1 29 0 4 916 303 85 0 0 chr11 43514413 43514460 -78329396 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 916 470 255 47 109 chr11 43515411 43515454 -78328402 + B3A SINE B2 1 42 -156 5 916 1213 54 0 0 chr11 43515454 43515601 -78328255 + B1_Mus2 SINE Alu 1 147 0 5 916 470 255 47 109 chr11 43515601 43515768 -78328088 + B3A SINE B2 43 198 0 5 917 619 204 33 60 chr11 43515959 43516110 -78327746 + B1F2 SINE Alu 3 149 0 5 917 223 49 49 0 chr11 43516192 43516233 -78327623 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 917 1174 62 0 0 chr11 43516246 43516391 -78327465 - B1_Mm SINE Alu 0 147 3 5 917 783 228 0 0 chr11 43516394 43516543 -78327313 - B1_Mur2 SINE Alu 0 149 1 5 917 240 319 26 26 chr11 43517132 43517248 -78326608 - PB1D10 SINE Alu -1 116 1 5 917 542 268 73 69 chr11 43517300 43517504 -78326352 + B3 SINE B2 5 209 -7 5 917 247 227 136 58 chr11 43517557 43517587 -78326269 - PB1D7 SINE Alu -9 111 1 5 917 250 274 41 0 chr11 43517587 43517660 -78326196 - ID_B1 SINE B4 -67 157 82 5 917 279 208 48 83 chr11 43521083 43521167 -78322689 - PB1D9 SINE Alu -6 114 34 6 917 261 304 34 34 chr11 43521809 43521928 -78321928 + PB1D9 SINE Alu 1 119 -1 6 917 345 245 17 78 chr11 43521943 43522058 -78321798 + PB1D9 SINE Alu 7 114 -6 6 917 207 140 17 50 chr11 43522655 43522715 -78321141 + T-rich Low_complexity Low_complexity 5 62 0 6 917 1205 41 7 0 chr11 43522717 43522863 -78320993 - B1_Mus1 SINE Alu 0 148 2 6 917 283 239 250 0 chr11 43522873 43522961 -78320895 - PB1D10 SINE Alu -7 110 1 6 917 327 303 62 27 chr11 43523954 43524066 -78319790 - PB1D10 SINE Alu -1 116 1 6 917 1376 76 16 16 chr11 43524096 43524283 -78319573 + B2_Mm2 SINE B2 1 187 -8 6 917 519 233 102 128 chr11 43524387 43524534 -78319322 - B3A SINE B2 -16 182 33 6 917 1493 64 5 0 chr11 43524534 43524722 -78319134 + B2_Mm1a SINE B2 1 189 -4 6 917 519 233 102 128 chr11 43524722 43524761 -78319095 - B3A SINE B2 -166 32 1 6 917 363 253 74 0 chr11 43524864 43524959 -78318897 - PB1D7 SINE Alu -2 118 17 7 917 309 226 240 50 chr11 43525249 43525370 -78318486 + B3A SINE B2 1 144 -54 7 917 291 200 85 24 chr11 43525464 43525546 -78318310 + ID_B1 SINE B4 134 220 -4 7 917 277 197 91 0 chr11 43525701 43525767 -78318089 - PB1D7 SINE Alu -9 111 40 7 917 310 240 183 0 chr11 43525844 43525948 -78317908 + B1_Mus1 SINE Alu 2 124 -24 7 917 306 0 0 0 chr11 43526153 43526187 -78317669 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 7 917 1496 58 37 0 chr11 43526491 43526679 -78317177 + B2_Mm2 SINE B2 1 195 0 7 917 475 286 35 7 chr11 43527265 43527406 -78316450 + RSINE1 SINE B4 11 155 -10 7 917 581 243 168 11 chr11 43528499 43528678 -78315178 + B3 SINE B2 1 207 -9 7 917 285 234 130 23 chr11 43528678 43528802 -78315054 - Lx8 LINE L1 -8 7465 7326 7 917 565 257 44 0 chr11 43528860 43528996 -78314860 + B1_Mur2 SINE Alu 7 148 -1 8 917 506 262 49 14 chr11 43529285 43529428 -78314428 - B1_Mur2 SINE Alu 0 149 2 8 917 180 0 0 0 chr11 43529438 43529458 -78314398 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 8 917 690 182 0 8 chr11 43529458 43529580 -78314276 - B1_Mus1 SINE Alu -26 122 2 8 917 410 271 34 20 chr11 43529580 43529607 -78314249 - ID SINE ID -145 79 51 8 917 394 271 113 16 chr11 43529700 43529824 -78314032 + B1F SINE Alu 6 141 -8 8 917 942 96 0 0 chr11 43530067 43530202 -78313654 + (TC)n Simple_repeat Simple_repeat 2 136 0 8 917 691 204 98 12 chr11 43530979 43531143 -78312713 + ID_B1 SINE B4 6 183 -41 8 917 668 183 42 14 chr11 43531172 43531316 -78312540 + B1_Mur2 SINE Alu 2 149 0 8 917 23 0 0 0 chr11 43531538 43531561 -78312295 + AT_rich Low_complexity Low_complexity 1 23 0 8 917 649 231 41 26 chr11 43531563 43531758 -78312098 - B3A SINE B2 0 198 1 9 917 954 138 36 6 chr11 43532091 43532258 -78311598 + B2_Mm2 SINE B2 1 172 -23 9 917 235 294 26 128 chr11 43533091 43533125 -78310731 + PB1D10 SINE Alu 1 105 -12 9 917 271 161 229 24 chr11 43533125 43533208 -78310648 + ID_B1 SINE B4 113 212 -12 9 917 505 211 35 35 chr11 43533238 43533351 -78310505 + PB1D9 SINE Alu 2 114 -6 9 917 21 0 0 0 chr11 43533902 43533923 -78309933 + AT_rich Low_complexity Low_complexity 1 21 0 9 917 276 154 0 0 chr11 43534972 43535024 -78308832 + A-rich Low_complexity Low_complexity 1 52 0 9 917 25 0 0 0 chr11 43535903 43535928 -78307928 + AT_rich Low_complexity Low_complexity 1 25 0 9 917 1238 41 7 0 chr11 43535972 43536118 -78307738 + B1_Mus2 SINE Alu 1 147 0 9 917 458 120 60 0 chr11 43536651 43536751 -78307105 + C-rich Low_complexity Low_complexity 5 110 0 9 917 216 0 0 0 chr11 43537444 43537468 -78306388 + (T)n Simple_repeat Simple_repeat 1 24 0 1 917 513 294 41 7 chr11 43537563 43537710 -78306146 + RSINE1 SINE B4 12 163 -2 1 917 348 210 109 10 chr11 43538250 43538351 -78305505 - PB1D9 SINE Alu -7 113 3 1 917 836 261 29 10 chr11 43538359 43538568 -78305288 - B3 SINE B2 -2 214 2 1 917 403 265 110 29 chr11 43538583 43538719 -78305137 - B1_Mur2 SINE Alu 0 149 3 1 917 423 209 174 0 chr11 43538915 43539030 -78304826 + B1F2 SINE Alu 10 144 -5 1 917 342 250 36 0 chr11 43539307 43539391 -78304465 + PB1D7 SINE Alu 29 115 -5 1 917 436 230 0 0 chr11 43539395 43539482 -78304374 + ID_B1 SINE B4 133 219 -5 1 917 288 229 28 28 chr11 43540257 43540329 -78303527 + ID4 SINE ID 2 73 -10 1 917 311 218 0 11 chr11 43540839 43540914 -78302942 - B1_Mur1 SINE Alu -27 122 52 1 917 21 57 0 0 chr11 43541122 43541157 -78302699 + AT_rich Low_complexity Low_complexity 1 35 0 1 917 1056 97 7 0 chr11 43541165 43541320 -78302536 + B2_Mm2 SINE B2 1 156 -39 1 917 268 157 202 12 chr11 43541836 43541920 -78301936 + PB1D10 SINE Alu 18 117 0 1 917 276 100 0 0 chr11 43541966 43542006 -78301850 + (CCCA)n Simple_repeat Simple_repeat 3 42 0 1 917 250 213 0 116 chr11 43542445 43542514 -78301342 + B4A SINE B4 232 292 0 1 917 475 222 74 0 chr11 43542606 43542714 -78301142 + B3A SINE B2 2 117 -81 1 917 217 227 0 22 chr11 43542877 43542922 -78300934 - B1F SINE Alu -103 46 3 1 917 1199 83 0 68 chr11 43545097 43545304 -78298552 + RMER17A2 LTR ERVK 1 193 -713 1 917 1548 187 60 24 chr11 43545315 43545650 -78298206 + RLTR26 LTR ERVK 296 642 0 1 917 475 230 80 0 chr11 43545885 43545998 -78297858 + B1F SINE Alu 4 125 -24 1 917 1142 237 199 53 chr11 43547832 43548316 -78295540 + RCHARR1 DNA MER1_type 270 839 -135 1 917 712 274 44 6 chr11 43548316 43548496 -78295360 - B3A SINE B2 -11 187 1 1 917 1142 237 199 53 chr11 43548496 43548551 -78295305 + RCHARR1 DNA MER1_type 840 897 -77 1 917 291 54 0 0 chr11 43548551 43548588 -78295268 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 917 1142 237 199 53 chr11 43548588 43548649 -78295207 + RCHARR1 DNA MER1_type 898 958 -16 1 917 602 147 428 13 chr11 43548843 43548995 -78294861 + B3 SINE B2 2 216 0 1 917 504 287 60 0 chr11 43549248 43549398 -78294458 - B4A SINE B4 -85 207 49 1 917 288 0 0 0 chr11 43549747 43549779 -78294077 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 917 21 0 0 0 chr11 43550045 43550066 -78293790 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 512 219 62 0 chr11 43550098 43550226 -78293630 - B3A SINE B2 -59 139 4 1 917 477 329 14 7 chr11 43550239 43550377 -78293479 - RSINE1 SINE B4 -19 146 8 1 917 332 270 127 0 chr11 43550438 43550564 -78293292 + B1F2 SINE Alu 1 142 -7 1 917 247 265 84 0 chr11 43550565 43550648 -78293208 + PB1D7 SINE Alu 30 119 -1 1 917 563 256 22 8 chr11 43550674 43550808 -78293048 + B3 SINE B2 81 216 0 1 917 256 244 116 0 chr11 43550918 43551004 -78292852 - PB1D10 SINE Alu -21 96 1 1 917 229 218 31 15 chr11 43550956 43551023 -78292833 - B4A SINE B4 -92 132 60 1 917 198 0 0 0 chr11 43551168 43551190 -78292666 + (T)n Simple_repeat Simple_repeat 1 22 0 1 917 813 209 0 7 chr11 43551190 43551339 -78292517 - B1_Mur2 SINE Alu 0 149 2 1 917 836 259 120 37 chr11 43551566 43551915 -78291941 + L1_Rod LINE L1 5459 5836 -11 1 917 790 101 92 0 chr11 43552458 43552577 -78291279 + B1_Mus1 SINE Alu 1 130 -18 1 917 207 0 0 0 chr11 43552584 43552607 -78291249 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 917 628 256 65 6 chr11 43552622 43552791 -78291065 + Lx6 LINE L1 7252 7430 -30 1 917 214 68 182 0 chr11 43552810 43552854 -78291002 + B3A SINE B2 1 52 -146 1 917 239 352 14 0 chr11 43553707 43553778 -78290078 + ID4_ SINE ID 3 74 -9 1 917 575 160 159 8 chr11 43553837 43553963 -78289893 + B1_Mur2 SINE Alu 5 149 0 1 917 219 36 0 0 chr11 43553991 43554019 -78289837 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 917 444 244 0 94 chr11 43554035 43554162 -78289694 + B1_Mus2 SINE Alu 1 115 -32 1 917 225 175 25 0 chr11 43554168 43554208 -78289648 + GA-rich Low_complexity Low_complexity 1 41 0 1 917 237 293 141 15 chr11 43554604 43554739 -78289117 + MLT1A1 LTR MaLR 246 397 -11 1 917 292 278 124 0 chr11 43554781 43554878 -78288978 + PB1D7 SINE Alu 4 112 -8 1 917 204 119 23 45 chr11 43555177 43555221 -78288635 + G-rich Low_complexity Low_complexity 6 48 0 1 917 442 207 45 0 chr11 43555375 43555486 -78288370 + PB1D7 SINE Alu 5 120 0 1 917 843 171 20 7 chr11 43555491 43555638 -78288218 + B1_Mur3 SINE Alu 1 149 0 1 917 28 0 0 0 chr11 43555638 43555666 -78288190 + AT_rich Low_complexity Low_complexity 1 28 0 1 917 247 222 0 18 chr11 43556073 43556128 -78287728 + PB1D10 SINE Alu 2 55 -62 1 917 181 109 43 0 chr11 43556149 43556195 -78287661 + A-rich Low_complexity Low_complexity 1 48 0 1 917 294 214 0 0 chr11 43556608 43556664 -78287192 - RSINE1 SINE B4 -102 63 8 1 917 324 281 96 9 chr11 43556681 43556796 -78287060 - PB1 SINE Alu -2 125 1 1 917 241 214 54 0 chr11 43557037 43557093 -78286763 + ID4 SINE ID 2 60 -23 1 917 628 179 24 0 chr11 43557150 43557273 -78286583 - B1_Mus2 SINE Alu 0 147 22 1 917 396 294 30 53 chr11 43557273 43557319 -78286537 - ID_B1 SINE B4 -1 223 59 1 917 198 343 15 15 chr11 43557408 43557476 -78286380 + MIRc SINE MIR 31 98 -170 1 917 217 317 98 0 chr11 43557942 43558024 -78285832 + PB1D10 SINE Alu 10 99 -18 1 917 2157 126 28 0 chr11 43558024 43558342 -78285514 - ORR1A2 LTR MaLR 0 327 1 1 917 330 294 109 0 chr11 43558405 43558524 -78285332 + B1F SINE Alu 6 137 -12 1 917 839 64 182 8 chr11 43559010 43559136 -78284720 - B1_Mus1 SINE Alu 0 148 1 1 917 5457 59 6 4 chr11 43559162 43559847 -78284009 + L1Md_F2 LINE L1 5897 6582 0 1 917 1173 61 0 20 chr11 43559974 43560124 -78283732 - B1_Mus2 SINE Alu 0 147 1 1 917 718 170 35 0 chr11 43560145 43560286 -78283570 - B1_Mur3 SINE Alu 0 149 4 1 917 633 233 16 0 chr11 43560317 43560446 -78283410 + ID_B1 SINE B4 83 213 -11 1 917 312 27 0 0 chr11 43560749 43560786 -78283070 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1 917 338 284 94 31 chr11 43561830 43561990 -78281866 + Charlie1b DNA MER1_type 49 218 -305 1 917 250 169 152 0 chr11 43562029 43562088 -78281768 + Charlie1b DNA MER1_type 210 277 -246 1 917 989 226 10 5 chr11 43562197 43562397 -78281459 + B3 SINE B2 1 201 -15 1 917 767 120 16 0 chr11 43562527 43562667 -78281189 + B1_Mus1 SINE Alu 1 150 0 1 917 1182 41 7 0 chr11 43562706 43562852 -78281004 + B1_Mus1 SINE Alu 2 148 0 1 917 487 231 25 25 chr11 43562954 43563074 -78280782 + RSINE1 SINE B4 11 130 -35 1 917 198 0 0 0 chr11 43563314 43563336 -78280520 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 917 1097 77 7 0 chr11 43563338 43563481 -78280375 - B1_Mus1 SINE Alu 0 148 5 1 917 342 245 9 89 chr11 43563539 43563651 -78280205 + B1F1 SINE Alu 24 126 -23 1 917 252 306 23 53 chr11 43563724 43563855 -78280001 + B1F SINE Alu 23 149 0 1 917 252 0 0 0 chr11 43563863 43563891 -78279965 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 917 216 290 16 0 chr11 43563933 43563995 -78279861 + G-rich Low_complexity Low_complexity 5 67 0 1 917 306 0 0 0 chr11 43563995 43564029 -78279827 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 917 378 0 0 0 chr11 43564029 43564070 -78279786 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 917 1512 125 68 0 chr11 43564083 43564362 -78279494 + RMER6B LTR ERVK 15 312 -149 1 917 1223 48 0 0 chr11 43564362 43564508 -78279348 + B1_Mm SINE Alu 1 146 -1 1 917 649 210 24 0 chr11 43564570 43564694 -78279162 + RSINE1 SINE B4 3 129 -36 1 917 279 272 58 58 chr11 43565165 43565286 -78278570 - B1F SINE Alu -28 121 1 1 917 555 165 92 0 chr11 43566045 43566154 -78277702 - PB1D9 SINE Alu 0 120 2 1 917 278 213 0 11 chr11 43566158 43566253 -78277603 + CT-rich Low_complexity Low_complexity 2 95 0 1 917 619 254 7 7 chr11 43566301 43566444 -78277412 - ID_B1 SINE B4 0 224 82 1 917 2956 116 47 4 chr11 43566709 43567196 -78276660 + RLTR11A LTR ERVK 21 528 0 1 917 695 216 7 26 chr11 43567278 43567430 -78276426 - B1F SINE Alu 0 149 1 1 917 557 191 0 19 chr11 43567669 43567776 -78276080 + RSINE1 SINE B4 2 106 -59 1 917 220 200 0 0 chr11 43567766 43567806 -78276050 - B1F2 SINE Alu -101 48 9 1 917 488 161 32 0 chr11 43568072 43568165 -78275691 - ORR1D2 LTR MaLR -2 368 273 1 917 258 237 0 17 chr11 43568835 43568895 -78274961 + RMER6B LTR ERVK 368 426 -35 1 917 944 252 60 15 chr11 43568907 43569187 -78274669 - ORR1D2 LTR MaLR -89 278 2 1 917 272 267 14 31 chr11 43569188 43569311 -78274545 - MTEb LTR MaLR -7 372 256 1 917 306 0 0 0 chr11 43569637 43569671 -78274185 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 917 1448 46 35 0 chr11 43569671 43569845 -78274011 - B2_Mm1a SINE B2 -12 181 2 1 917 818 114 15 0 chr11 43569891 43570023 -78273833 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 1 917 633 256 0 0 chr11 43570028 43570165 -78273691 - B1F2 SINE Alu -12 137 1 1 917 21 0 0 0 chr11 43570208 43570229 -78273627 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 1204 61 0 0 chr11 43570229 43570377 -78273479 - B1_Mus1 SINE Alu 0 148 1 2 917 527 306 48 11 chr11 43570379 43570410 -78273446 - B3A SINE B2 -3 195 167 2 917 390 21 0 0 chr11 43570410 43570457 -78273399 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 917 527 306 48 11 chr11 43570457 43570613 -78273243 - B3A SINE B2 -32 166 2 2 917 850 233 0 17 chr11 43570650 43570829 -78273027 - B3A SINE B2 -22 176 1 2 917 252 271 34 45 chr11 43571201 43571290 -78272566 + ORR1E LTR MaLR 270 357 -2 2 917 1200 251 66 9 chr11 43571307 43571656 -78272200 + ORR1D2 LTR MaLR 1 369 -1 2 917 305 309 45 17 chr11 43571870 43571997 -78271859 - B1F2 SINE Alu -1 119 1 2 917 339 183 36 24 chr11 43572290 43572374 -78271482 - RMER1C Other Other 0 1342 1258 2 917 1137 128 0 0 chr11 43572388 43572568 -78271288 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 917 660 160 0 0 chr11 43572568 43572687 -78271169 + GA-rich Low_complexity Low_complexity 1 119 0 2 917 1868 224 23 42 chr11 43572689 43573118 -78270738 - RMER1C Other Other -117 1225 805 2 917 2297 197 80 13 chr11 43573122 43573223 -78270633 - RLTR20B3 LTR ERVK 0 577 474 2 917 396 0 0 0 chr11 43573223 43573267 -78270589 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 917 2297 197 80 13 chr11 43573267 43573410 -78270446 - RLTR20B3 LTR ERVK -104 473 320 2 917 327 25 0 0 chr11 43573410 43573450 -78270406 + (TGGGGG)n Simple_repeat Simple_repeat 6 45 0 2 917 2297 197 80 13 chr11 43573450 43573745 -78270111 - RLTR20B3 LTR ERVK -258 319 2 2 917 823 280 11 80 chr11 43573745 43574009 -78269847 - RMER1C Other Other -684 658 413 2 917 305 148 16 0 chr11 43574025 43574086 -78269770 - ORR1C1 LTR MaLR -8 359 298 2 917 895 121 49 14 chr11 43574113 43574256 -78269600 - B1_Mur3 SINE Alu -1 148 1 2 917 944 183 5 71 chr11 43574256 43574480 -78269376 - ORR1C1 LTR MaLR -57 321 113 2 917 265 211 0 0 chr11 43574628 43574685 -78269171 - MTEa LTR MaLR -141 238 182 2 917 405 0 0 0 chr11 43574887 43574932 -78268924 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 917 272 244 293 9 chr11 43576221 43576337 -78267519 - B1F SINE Alu 0 149 1 2 917 209 253 0 26 chr11 43576374 43576451 -78267405 + GA-rich Low_complexity Low_complexity 3 77 0 2 917 885 126 0 0 chr11 43576453 43576596 -78267260 + (GGA)n Simple_repeat Simple_repeat 2 144 0 2 917 183 129 0 0 chr11 43576671 43576702 -78267154 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 2 917 590 239 0 0 chr11 43576742 43576855 -78267001 - ID_B1 SINE B4 -19 205 93 2 917 540 286 102 59 chr11 43577051 43577307 -78266549 - B4 SINE B4 -21 271 5 2 917 1053 139 0 0 chr11 43577405 43577578 -78266278 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 2 917 237 108 0 0 chr11 43577578 43577615 -78266241 + (CCTG)n Simple_repeat Simple_repeat 4 40 0 2 917 1076 150 75 0 chr11 43577615 43577828 -78266028 - Lx2 LINE L1 -1 6996 6768 2 917 243 0 0 0 chr11 43577882 43577909 -78265947 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 917 408 306 87 13 chr11 43577915 43578064 -78265792 - RSINE1 SINE B4 -2 163 4 2 917 28 0 0 0 chr11 43578568 43578596 -78265260 + AT_rich Low_complexity Low_complexity 1 28 0 2 917 594 41 0 0 chr11 43578786 43578859 -78264997 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 2 917 523 29 0 0 chr11 43578862 43578930 -78264926 - B1_Mus2 SINE Alu -78 69 2 2 917 449 206 0 89 chr11 43578930 43578960 -78264896 - B4 SINE B4 -135 154 66 2 917 411 338 22 22 chr11 43578942 43579078 -78264778 - B1F SINE Alu -1 148 13 2 917 315 359 58 6 chr11 43579526 43579697 -78264159 + L1M5 LINE L1 5103 5282 -864 2 917 391 258 56 0 chr11 43579752 43579841 -78264015 - B3 SINE B2 -122 94 1 2 917 873 268 61 7 chr11 43579906 43580203 -78263653 + L1M5 LINE L1 5318 5630 -549 2 917 258 32 0 0 chr11 43580219 43580250 -78263606 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 917 241 304 147 0 chr11 43580284 43580386 -78263470 - Charlie4z DNA MER1_type -49 118 2 2 917 298 227 13 51 chr11 43580872 43580951 -78262905 + ID4_ SINE ID 4 79 -4 2 917 1176 173 4 35 chr11 43581438 43581666 -78262190 + URR1A DNA MER1_type 5 225 -1 2 917 402 236 71 26 chr11 43581693 43581806 -78262050 + B1F SINE Alu 20 137 -12 2 917 303 244 59 125 chr11 43581806 43581826 -78262030 + ID_B1 SINE B4 101 224 0 2 917 1331 103 11 5 chr11 43581979 43582165 -78261691 - B2_Mm2 SINE B2 -8 187 1 2 917 290 284 101 16 chr11 43582192 43582321 -78261535 - B1F1 SINE Alu -3 146 7 2 917 512 186 0 0 chr11 43582439 43582525 -78261331 + B1F SINE Alu 22 107 -42 2 917 445 312 9 0 chr11 43582543 43582655 -78261201 + RSINE1 SINE B4 38 150 -15 2 917 186 43 0 0 chr11 43582666 43582689 -78261167 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2 917 765 250 47 0 chr11 43582736 43582928 -78260928 + ID_B1 SINE B4 14 214 -10 2 917 273 306 41 0 chr11 43583262 43583360 -78260496 - ORR1E LTR MaLR -11 348 247 2 917 315 0 0 0 chr11 43583628 43583663 -78260193 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 917 697 264 17 78 chr11 43584166 43584396 -78259460 - B3 SINE B2 0 216 1 2 917 27 49 0 0 chr11 43584401 43584442 -78259414 + AT_rich Low_complexity Low_complexity 1 41 0 2 917 387 0 0 0 chr11 43584444 43584487 -78259369 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 917 455 238 38 9 chr11 43584616 43584722 -78259134 - PB1D10 SINE Alu -6 111 3 2 917 562 229 3 0 chr11 43584780 43584909 -78258947 + B1F1 SINE Alu 5 135 -14 2 917 603 74 0 0 chr11 43584911 43584992 -78258864 + (CAAAC)n Simple_repeat Simple_repeat 5 85 0 2 917 180 176 0 0 chr11 43585273 43585307 -78258549 + (TATG)n Simple_repeat Simple_repeat 1 34 0 2 917 631 271 38 90 chr11 43585347 43585558 -78258298 - B4A SINE B4 -8 284 85 2 917 1043 286 68 47 chr11 43585572 43585678 -78258178 - Lx8 LINE L1 -48 7425 7318 2 917 489 104 0 0 chr11 43585678 43585755 -78258101 + (TCTG)n Simple_repeat Simple_repeat 3 79 0 2 917 1043 286 68 47 chr11 43585755 43586118 -78257738 - Lx8 LINE L1 -156 7317 6946 2 917 423 168 41 116 chr11 43586226 43586347 -78257509 - PB1D10 SINE Alu -5 112 1 2 917 330 178 65 32 chr11 43586430 43586523 -78257333 - B1F SINE Alu 0 149 54 2 917 220 211 33 50 chr11 43586614 43586674 -78257182 + B1F1 SINE Alu 2 60 -89 2 917 193 308 37 37 chr11 43586989 43587097 -78256759 - MIRb SINE MIR -111 157 50 2 917 638 242 12 30 chr11 43588181 43588347 -78255509 - RSINE1 SINE B4 0 165 3 2 917 405 0 0 0 chr11 43588494 43588539 -78255317 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 917 203 200 28 28 chr11 43588638 43588710 -78255146 + (TAA)n Simple_repeat Simple_repeat 2 73 0 2 917 218 274 14 14 chr11 43588986 43589060 -78254796 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 917 183 80 0 0 chr11 43589777 43589802 -78254054 + (CGG)n Simple_repeat Simple_repeat 1 25 0 2 917 22 0 0 0 chr11 43590077 43590099 -78253757 + AT_rich Low_complexity Low_complexity 1 22 0 2 917 418 282 20 27 chr11 43590145 43590291 -78253565 + B3A SINE B2 2 146 -52 2 917 387 0 0 0 chr11 43590291 43590334 -78253522 + (CAA)n Simple_repeat Simple_repeat 2 44 0 2 917 441 0 0 0 chr11 43590350 43590399 -78253457 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 917 445 209 12 0 chr11 43590413 43590499 -78253357 + B1_Mur1 SINE Alu 20 106 -43 2 917 378 0 0 0 chr11 43590503 43590545 -78253311 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2 917 306 0 0 0 chr11 43590607 43590641 -78253215 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 917 240 275 125 0 chr11 43590891 43590971 -78252885 + RSINE1 SINE B4 38 127 -38 2 917 22 56 0 0 chr11 43590986 43591022 -78252834 + AT_rich Low_complexity Low_complexity 1 36 0 2 917 436 261 34 88 chr11 43591027 43591174 -78252682 + B1F SINE Alu 10 148 -1 2 917 574 317 110 41 chr11 43591903 43592485 -78251371 + L1ME5 LINE L1 5561 6182 -12 2 917 207 69 0 0 chr11 43592877 43592906 -78250950 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 2 917 3417 149 116 63 chr11 43593018 43593736 -78250120 - RMER6A LTR ERVK 0 756 1 2 917 619 232 0 15 chr11 43594850 43594982 -78248874 + ID_B1 SINE B4 87 219 -73 2 917 309 26 0 0 chr11 43594982 43595020 -78248836 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2 917 237 333 43 80 chr11 43595020 43595050 -78248806 + B4A SINE B4 220 246 -46 2 917 346 308 15 99 chr11 43595221 43595423 -78248433 - MER2 DNA MER2_type -77 268 84 2 917 399 317 7 0 chr11 43595479 43595624 -78248232 - RSINE1 SINE B4 -18 147 2 2 917 257 309 0 0 chr11 43595626 43595694 -78248162 - MER2 DNA MER2_type -275 70 3 2 917 264 331 92 30 chr11 43596580 43596711 -78247145 - B1F1 SINE Alu -7 142 4 2 917 537 260 89 0 chr11 43596745 43596868 -78246988 - ID_B1 SINE B4 -7 217 84 2 917 324 0 0 0 chr11 43596896 43596932 -78246924 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 917 212 210 59 5 chr11 43596996 43597072 -78246784 + MIR SINE MIR 118 198 -70 2 917 251 54 27 0 chr11 43597198 43597235 -78246621 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 2 917 851 244 68 84 chr11 43598798 43599094 -78244762 - B4A SINE B4 0 292 2 2 917 230 289 55 47 chr11 43599229 43599356 -78244500 - MER113 DNA MER1_type -278 243 116 2 917 189 216 0 0 chr11 43599374 43599411 -78244445 + MIRb SINE MIR 217 253 -15 2 917 291 154 0 0 chr11 43599378 43599430 -78244426 + L2a LINE L2 3375 3426 0 2 917 1184 224 44 115 chr11 43600081 43600489 -78243367 + MTE2a LTR MaLR 1 379 0 2 917 764 146 85 28 chr11 43602339 43602480 -78241376 + B1_Mur4 SINE Alu 2 150 0 2 917 297 51 0 0 chr11 43602488 43602527 -78241329 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 917 183 80 0 0 chr11 43602596 43602621 -78241235 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 917 551 335 31 24 chr11 43602631 43602919 -78240937 + B4A SINE B4 2 291 -1 2 917 609 235 0 0 chr11 43602954 43603133 -78240723 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 917 237 182 0 0 chr11 43603146 43603201 -78240655 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 917 331 161 0 35 chr11 43603201 43603259 -78240597 + HAL1-3A_ME LINE L1 1976 2031 -827 2 917 458 279 116 60 chr11 43603383 43603615 -78240241 - B4A SINE B4 -42 250 4 2 917 332 212 0 15 chr11 43603622 43603689 -78240167 - ID_B1 SINE B4 -2 222 157 3 917 587 274 38 6 chr11 43603864 43604022 -78239834 - ID_B1 SINE B4 -57 167 5 3 917 733 216 47 6 chr11 43604862 43605034 -78238822 - B3 SINE B2 -33 183 5 3 917 1152 80 6 11 chr11 43605034 43605210 -78238646 + (TCTCCC)n Simple_repeat Simple_repeat 4 178 0 3 917 469 302 0 14 chr11 43605210 43605351 -78238505 - B1F SINE Alu -5 144 6 3 917 355 285 33 19 chr11 43605834 43606012 -78237844 + L1M5 LINE L1 4443 4624 -1522 3 917 387 149 0 0 chr11 43606589 43606663 -78237193 + (CAA)n Simple_repeat Simple_repeat 2 75 0 3 917 240 298 0 0 chr11 43606678 43606735 -78237121 + ID4_ SINE ID 1 57 -26 3 917 1878 94 80 7 chr11 43606735 43607036 -78236820 + ORR1A2 LTR MaLR 1 323 -4 3 917 657 282 22 6 chr11 43607234 43607416 -78236440 - ID_B1 SINE B4 -38 186 2 3 917 398 232 0 12 chr11 43607478 43607561 -78236295 - ID4_ SINE ID 0 83 2 3 917 228 222 19 0 chr11 43607821 43607875 -78235981 + B3A SINE B2 6 60 -138 3 917 471 60 0 0 chr11 43607928 43607995 -78235861 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 917 912 232 29 10 chr11 43608434 43608639 -78235217 - B3 SINE B2 -6 210 2 3 917 625 181 0 14 chr11 43608896 43609314 -78234542 + (TG)n Simple_repeat Simple_repeat 1 411 0 3 917 506 220 28 14 chr11 43610189 43610332 -78233524 + L1MA6 LINE L1 6030 6174 -126 3 917 355 300 18 26 chr11 43610335 43610448 -78233408 + PB1D9 SINE Alu 1 112 -8 3 917 719 284 35 0 chr11 43610470 43610671 -78233185 + B3 SINE B2 9 216 0 3 917 254 95 24 0 chr11 43610691 43610733 -78233123 + (GGGAGA)n Simple_repeat Simple_repeat 1 43 0 3 917 454 276 39 8 chr11 43611322 43611450 -78232406 + MLT1A0 LTR MaLR 27 158 -207 3 917 1011 254 5 28 chr11 43611627 43611842 -78232014 + B3 SINE B2 1 210 -6 3 917 565 219 17 17 chr11 43612045 43612161 -78231695 - ID_B1 SINE B4 -4 220 105 3 917 1083 213 4 22 chr11 43612512 43612738 -78231118 - URR1A DNA MER1_type 0 226 5 3 917 1083 256 90 28 chr11 43613081 43613357 -78230499 + MTE2b LTR MaLR 1 303 -76 3 917 360 0 0 0 chr11 43613357 43613397 -78230459 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 3 917 1083 256 90 28 chr11 43613397 43613477 -78230379 + MTE2b LTR MaLR 304 379 0 3 917 283 282 52 88 chr11 43613524 43613660 -78230196 - MIRb SINE MIR 0 268 138 3 917 262 262 24 36 chr11 43613669 43613752 -78230104 - ID4_ SINE ID 0 83 2 3 917 436 248 97 0 chr11 43613762 43613875 -78229981 - PB1 SINE Alu -2 125 2 3 917 1313 275 48 26 chr11 43614023 43614286 -78229570 + Lx8 LINE L1 5489 5778 -1695 3 917 180 0 0 0 chr11 43614286 43614306 -78229550 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 917 1313 298 64 62 chr11 43614306 43614851 -78229005 + Lx8 LINE L1 5779 6323 -1150 3 917 435 230 80 0 chr11 43614908 43615008 -78228848 + Lx8 LINE L1 6333 6440 -1033 3 917 357 303 116 0 chr11 43616795 43616950 -78226906 + MIRb SINE MIR 38 210 -58 3 917 3074 289 98 42 chr11 43617227 43618348 -78225508 + Lx8 LINE L1 6216 7338 -135 3 917 1136 58 0 0 chr11 43618348 43618487 -78225369 + B1_Mus1 SINE Alu 1 139 -9 3 917 509 0 0 16 chr11 43618487 43618549 -78225307 + (CAAAC)n Simple_repeat Simple_repeat 2 62 0 3 917 3074 284 102 43 chr11 43618549 43618707 -78225149 + Lx8 LINE L1 7339 7470 -3 3 917 493 269 0 0 chr11 43619062 43619181 -78224675 - PB1D9 SINE Alu -1 119 1 3 917 500 236 110 31 chr11 43619196 43619323 -78224533 + ID_B1 SINE B4 82 218 -6 3 917 364 314 17 93 chr11 43619333 43619505 -78224351 + B4A SINE B4 16 174 -118 3 917 552 30 0 0 chr11 43619609 43619675 -78224181 + (CCA)n Simple_repeat Simple_repeat 1 66 0 3 917 239 306 32 86 chr11 43619699 43619792 -78224064 + RSINE1 SINE B4 78 165 0 3 917 797 295 36 36 chr11 43619818 43620034 -78223822 + B4 SINE B4 1 219 -73 3 917 2135 60 0 11 chr11 43620034 43620306 -78223550 - L1Md_F2 LINE L1 -19 6563 6295 3 917 797 295 36 36 chr11 43620306 43620342 -78223514 + B4 SINE B4 220 253 -39 3 917 2638 66 3 0 chr11 43620342 43620674 -78223182 + L1Md_F2 LINE L1 5858 6190 -392 3 917 315 0 0 0 chr11 43620676 43620711 -78223145 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 917 187 369 66 44 chr11 43621805 43621941 -78221915 + MIR3 SINE MIR 10 148 -60 3 917 371 291 37 0 chr11 43622216 43622350 -78221506 - B1F SINE Alu 0 149 11 3 917 213 196 0 0 chr11 43622965 43623016 -78220840 + C-rich Low_complexity Low_complexity 2 52 0 3 917 777 301 41 15 chr11 43623023 43623219 -78220637 - ID_B1 SINE B4 -21 203 3 3 917 392 238 158 95 chr11 43623233 43623256 -78220600 - ID_B1 SINE B4 -2 222 209 3 917 851 278 66 80 chr11 43623256 43623620 -78220236 + ORR1E LTR MaLR 1 359 0 3 917 392 238 158 95 chr11 43623620 43623754 -78220102 - ID_B1 SINE B4 -16 208 55 3 917 219 324 116 56 chr11 43623754 43624021 -78219835 + L2a LINE L2 2821 3104 -322 3 917 288 77 0 0 chr11 43624103 43624142 -78219714 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 917 945 141 7 0 chr11 43624142 43624284 -78219572 - B1_Mus1 SINE Alu -5 143 1 3 917 689 70 10 0 chr11 43624353 43624453 -78219403 + (TTCC)n Simple_repeat Simple_repeat 1 101 0 3 917 180 0 0 0 chr11 43624453 43624473 -78219383 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 3 917 236 254 143 0 chr11 43624551 43624614 -78219242 - B1F SINE Alu -4 145 74 3 917 261 118 0 0 chr11 43624682 43624733 -78219123 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 917 303 340 26 59 chr11 43624792 43624945 -78218911 + MIRb SINE MIR 84 231 -37 3 917 230 250 77 0 chr11 43625596 43625648 -78218208 + RSINE1 SINE B4 86 141 -24 3 917 396 0 0 0 chr11 43625651 43625695 -78218161 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 917 437 228 29 135 chr11 43625738 43625834 -78218022 + MTEa LTR MaLR 236 320 -59 3 917 571 26 13 13 chr11 43625834 43625912 -78217944 + (TCCC)n Simple_repeat Simple_repeat 1 78 0 3 917 437 219 28 134 chr11 43625912 43625975 -78217881 + MTEa LTR MaLR 321 378 -1 3 917 579 112 0 0 chr11 43626053 43626142 -78217714 + (GGGAGA)n Simple_repeat Simple_repeat 1 89 0 3 917 398 289 35 0 chr11 43626709 43626823 -78217033 + B1F SINE Alu 1 118 -31 3 917 509 231 40 103 chr11 43627403 43627577 -78216279 - RSINE1 SINE B4 0 165 3 3 917 449 333 18 88 chr11 43627967 43628296 -78215560 + Lx9 LINE L1 7140 7445 -199 3 917 1191 255 74 22 chr11 43628478 43628935 -78214921 - MER31A LTR ERV1 -4 481 1 3 917 418 333 45 30 chr11 43629199 43629408 -78214448 + ID_B1 SINE B4 39 248 -44 3 917 233 321 43 26 chr11 43629495 43629610 -78214246 - MIRb SINE MIR -57 205 89 3 917 838 270 50 14 chr11 43629713 43629931 -78213925 + MTE2b LTR MaLR 1 226 -153 3 917 335 188 119 48 chr11 43629951 43630035 -78213821 + MTE2b LTR MaLR 290 379 0 3 917 590 149 0 45 chr11 43630273 43630428 -78213428 + CT-rich Low_complexity Low_complexity 1 148 0 3 917 804 275 9 23 chr11 43630787 43631003 -78212853 - ID_B1 SINE B4 -9 215 3 3 917 273 353 47 32 chr11 43631718 43631908 -78211948 - MIR SINE MIR -6 256 64 3 917 594 283 0 0 chr11 43631961 43632081 -78211775 - RSINE1 SINE B4 -43 122 3 3 917 2248 179 12 33 chr11 43632083 43632511 -78211345 + MTC LTR MaLR 1 419 -2 3 917 300 287 76 23 chr11 43632830 43632962 -78210894 - MER5A DNA MER1_type -15 174 36 3 917 567 0 0 0 chr11 43633086 43633149 -78210707 + (TTTTA)n Simple_repeat Simple_repeat 3 65 0 3 917 1578 53 0 0 chr11 43633576 43633764 -78210092 + B2_Mm1t SINE B2 1 188 -5 3 917 282 116 0 0 chr11 43633842 43633885 -78209971 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 917 265 250 15 30 chr11 43633886 43633952 -78209904 - RSINE1 SINE B4 -37 128 64 3 917 222 336 58 8 chr11 43634149 43634269 -78209587 - MIRb SINE MIR -29 239 114 3 917 573 286 62 0 chr11 43634963 43635155 -78208701 - ID_B1 SINE B4 -19 205 2 3 917 867 232 76 0 chr11 43635550 43635748 -78208108 + ID_B1 SINE B4 1 213 -11 3 917 393 337 136 53 chr11 43635774 43636092 -78207764 + L1MC4a LINE L1 5624 5985 -1897 3 917 789 60 72 0 chr11 43636092 43636259 -78207597 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 917 393 337 136 53 chr11 43636259 43636338 -78207518 + L1MC4a LINE L1 5986 6054 -1828 3 917 942 139 0 0 chr11 43636635 43636901 -78206955 + (CA)n Simple_repeat Simple_repeat 1 266 0 3 917 480 287 127 22 chr11 43636934 43637212 -78206644 + MLT1A LTR MaLR 6 364 -44 3 917 215 207 16 94 chr11 43637499 43637563 -78206293 + B2_Mm1t SINE B2 39 97 -96 3 917 576 84 0 0 chr11 43637991 43638074 -78205782 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 917 547 325 106 8 chr11 43638074 43638319 -78205537 - B4 SINE B4 -18 274 6 3 917 476 265 54 7 chr11 43638342 43638490 -78205366 + RSINE1 SINE B4 4 158 -7 3 917 22 35 0 0 chr11 43638495 43638524 -78205332 + AT_rich Low_complexity Low_complexity 1 29 0 3 917 2293 225 210 7 chr11 43638809 43639386 -78204470 + Lx6 LINE L1 6740 7433 -27 3 917 275 230 20 0 chr11 43639480 43639632 -78204224 + (CAGAGA)n Simple_repeat Simple_repeat 4 158 0 3 917 694 313 125 29 chr11 43639709 43640125 -78203731 + Charlie4a DNA MER1_type 29 484 -24 3 917 530 333 47 31 chr11 43640408 43640665 -78203191 + Arthur1 DNA Tip100 312 572 -3375 3 917 352 300 46 20 chr11 43640668 43640821 -78203035 + Arthur1 DNA Tip100 3470 3626 -321 3 917 596 235 107 41 chr11 43641550 43641624 -78202232 - Charlie18a DNA MER1_type -37 305 228 3 917 305 24 0 23 chr11 43641624 43641667 -78202189 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 917 596 235 107 41 chr11 43641667 43641836 -78202020 - Charlie18a DNA MER1_type -115 227 46 3 917 474 292 58 52 chr11 43641861 43642054 -78201802 + MIRb SINE MIR 3 196 -12 3 917 242 278 43 43 chr11 43642287 43642381 -78201475 - MER5A DNA MER1_type -22 167 74 3 917 188 370 0 0 chr11 43642710 43642764 -78201092 + L2b LINE L2 2648 2701 -718 3 917 501 47 0 0 chr11 43642829 43642893 -78200963 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 917 733 213 18 61 chr11 43642893 43643058 -78200798 - B3A SINE B2 -39 159 2 4 917 983 233 28 0 chr11 43643146 43643361 -78200495 + ID_B1 SINE B4 2 222 -2 4 917 1275 82 0 0 chr11 43643369 43643576 -78200280 + (CCA)n Simple_repeat Simple_repeat 1 207 0 4 917 344 355 107 5 chr11 43644381 43644596 -78199260 + MIRb SINE MIR 15 251 -17 4 917 214 324 53 71 chr11 43644595 43644708 -78199148 + L2b LINE L2 3257 3367 -8 3 917 295 356 35 9 chr11 43646489 43646605 -78197251 + MER5A DNA MER1_type 38 156 -33 4 917 286 324 9 29 chr11 43646669 43646774 -78197082 - MIR SINE MIR -84 124 22 4 918 371 316 52 24 chr11 43647037 43647206 -78196650 - MIRb SINE MIR -55 213 42 4 918 21 0 0 0 chr11 43647441 43647462 -78196394 + AT_rich Low_complexity Low_complexity 1 21 0 4 918 30 93 0 0 chr11 43649848 43649934 -78193922 + GC_rich Low_complexity Low_complexity 1 86 0 4 918 991 243 5 27 chr11 43650738 43650962 -78192894 - ID_B1 SINE B4 -1 223 5 4 918 586 85 11 11 chr11 43651015 43651110 -78192746 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 4 918 234 0 0 0 chr11 43651310 43651336 -78192520 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 918 255 61 0 0 chr11 43651353 43651386 -78192470 + (A)n Simple_repeat Simple_repeat 1 33 0 4 918 593 78 33 0 chr11 43651810 43651900 -78191956 + (TCTCC)n Simple_repeat Simple_repeat 4 96 0 4 918 494 278 16 0 chr11 43651905 43652031 -78191825 - B1F SINE Alu -21 128 1 4 918 192 185 0 0 chr11 43652374 43652428 -78191428 + T-rich Low_complexity Low_complexity 1 54 0 4 918 718 228 108 10 chr11 43652428 43652623 -78191233 - B3 SINE B2 0 216 3 4 918 632 224 22 22 chr11 43652628 43652765 -78191091 - B1F SINE Alu -2 147 11 4 918 225 0 0 0 chr11 43652856 43652881 -78190975 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 4 918 486 0 0 0 chr11 43653739 43653793 -78190063 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 918 945 90 0 0 chr11 43654434 43654567 -78189289 + (TC)n Simple_repeat Simple_repeat 2 134 0 4 918 416 262 28 42 chr11 43654798 43654970 -78188886 - MIRb SINE MIR -99 177 9 4 918 299 287 40 60 chr11 43655312 43655412 -78188444 + MIRm SINE MIR 91 188 -88 4 918 260 334 34 73 chr11 43655474 43655656 -78188200 - MIRb SINE MIR -24 244 71 4 918 195 100 0 0 chr11 43656365 43656395 -78187461 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 4 918 501 338 6 18 chr11 43656464 43656627 -78187229 + MER58A DNA MER1_type 48 208 -16 4 918 273 328 59 17 chr11 43656633 43656751 -78187105 - MIR3 SINE MIR -48 160 38 4 918 216 293 38 51 chr11 43656786 43656865 -78186991 + MIR SINE MIR 48 125 -137 4 918 245 236 28 0 chr11 43657122 43657194 -78186662 + (TATG)n Simple_repeat Simple_repeat 2 75 0 4 918 754 170 7 26 chr11 43657248 43657399 -78186457 - B1_Mus1 SINE Alu 0 148 1 4 918 346 312 96 81 chr11 43658442 43658651 -78185205 - MIRb SINE MIR -15 253 40 4 918 231 104 42 0 chr11 43658876 43658924 -78184932 + L1MA5 LINE L1 5767 5816 -484 4 918 463 289 9 0 chr11 43658939 43659053 -78184803 + ID_B1 SINE B4 84 198 -26 4 918 542 281 102 5 chr11 43659125 43659322 -78184534 + B3 SINE B2 1 216 0 4 918 538 321 160 10 chr11 43659343 43659736 -78184120 + L1MA5 LINE L1 5815 6266 -34 4 918 1451 267 82 16 chr11 43659838 43660296 -78183560 + MT2A LTR ERVL 2 493 -40 4 918 587 45 26 35 chr11 43660296 43660412 -78183444 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 4 918 1451 267 82 16 chr11 43660412 43660452 -78183404 + MT2A LTR ERVL 494 533 0 4 918 477 0 0 0 chr11 43660563 43660616 -78183240 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 918 464 330 132 0 chr11 43660703 43660885 -78182971 + MIR SINE MIR 57 262 0 4 918 700 318 45 83 chr11 43661197 43661212 -78182644 - B4 SINE B4 -11 281 264 4 918 302 0 0 26 chr11 43661212 43661251 -78182605 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 918 700 318 45 83 chr11 43661251 43661523 -78182333 - B4 SINE B4 -29 263 5 4 918 364 279 38 69 chr11 43662438 43662604 -78181252 - MIR3 SINE MIR -41 167 12 4 918 4191 31 0 0 chr11 43662821 43663301 -78180555 - L1Md_F2 LINE L1 -13 6569 6090 4 918 270 56 0 0 chr11 43663325 43663361 -78180495 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 918 431 261 81 32 chr11 43663372 43663495 -78180361 - RSINE1 SINE B4 -33 132 4 4 918 1389 65 43 5 chr11 43663589 43663775 -78180081 - B2_Mm2 SINE B2 -1 194 2 4 918 943 232 24 5 chr11 43663819 43664031 -78179825 - ID_B1 SINE B4 -7 217 2 4 918 298 344 24 8 chr11 43664082 43664208 -78179648 - B1F SINE Alu -18 131 4 4 918 742 206 116 19 chr11 43664219 43664412 -78179444 - B3 SINE B2 -1 197 1 4 918 285 284 97 10 chr11 43665299 43665402 -78178454 - MIR3 SINE MIR -15 193 82 4 918 453 62 0 0 chr11 43665621 43665686 -78178170 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 918 243 0 0 0 chr11 43665802 43665829 -78178027 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 918 195 254 97 48 chr11 43665853 43665915 -78177941 - MIRm SINE MIR -103 173 109 4 918 375 226 21 0 chr11 43666055 43666152 -78177704 + MIRc SINE MIR 49 149 -59 4 918 273 222 0 0 chr11 43667233 43667296 -78176560 + CT-rich Low_complexity Low_complexity 1 63 0 4 918 727 280 158 44 chr11 43667296 43667864 -78175992 - L1MB1 LINE L1 0 6171 5565 4 918 222 329 18 47 chr11 43667954 43668123 -78175733 + GA-rich Low_complexity Low_complexity 6 169 0 4 918 246 280 27 0 chr11 43668273 43668348 -78175508 - L1MB1 LINE L1 -631 5552 5476 4 918 699 267 61 146 chr11 43668406 43668614 -78175242 - B4 SINE B4 -4 288 89 4 918 886 219 55 5 chr11 43668614 43668816 -78175040 - B3 SINE B2 0 216 5 4 918 699 267 61 146 chr11 43668816 43668901 -78174955 - B4 SINE B4 -204 88 20 4 918 230 264 220 0 chr11 43668945 43669036 -78174820 - L1MB1 LINE L1 -849 5463 5353 4 918 25716 147 23 7 chr11 43669142 43673328 -78170528 + L1_Mus4 LINE L1 384 4634 -1249 4 918 288 0 0 0 chr11 43673328 43673360 -78170496 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 918 25716 117 24 7 chr11 43673360 43675340 -78168516 + L1_Mus4 LINE L1 4635 6635 -1 4 918 240 258 0 16 chr11 43676022 43676085 -78167771 + CT-rich Low_complexity Low_complexity 2 63 0 4 918 332 310 150 19 chr11 43676235 43676442 -78167414 + L1M5 LINE L1 4415 4648 -1498 4 918 727 170 37 4 chr11 43676807 43677082 -78166774 + (CATA)n Simple_repeat Simple_repeat 1 284 0 4 918 286 133 48 48 chr11 43677087 43677150 -78166706 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 4 918 24 0 0 0 chr11 43677259 43677283 -78166573 + AT_rich Low_complexity Low_complexity 1 24 0 4 918 758 225 38 61 chr11 43677285 43677498 -78166358 + B3 SINE B2 3 210 -6 4 918 729 245 69 30 chr11 43678646 43678848 -78165008 - B4 SINE B4 0 292 83 4 918 923 153 141 10 chr11 43679844 43680042 -78163814 - URR1B DNA MER1_type 0 225 2 4 918 1288 0 13 0 chr11 43680046 43680198 -78163658 + (TTC)n Simple_repeat Simple_repeat 1 154 0 4 918 1225 65 6 0 chr11 43680199 43680368 -78163488 - B2_Mm1a SINE B2 -22 171 2 4 918 317 336 30 0 chr11 43680603 43680734 -78163122 - MER117 DNA MER1_type -4 193 59 4 918 552 15 0 0 chr11 43681129 43681194 -78162662 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 918 342 0 0 0 chr11 43682366 43682404 -78161452 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 918 778 277 89 12 chr11 43682453 43682712 -78161144 - B4 SINE B4 -11 281 3 4 918 321 89 0 0 chr11 43683587 43683632 -78160224 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 4 918 345 280 9 27 chr11 43683742 43683852 -78160004 - Tigger5 DNA MER2_type 0 2406 2299 4 918 329 332 77 19 chr11 43683847 43684056 -78159800 - Tigger5 DNA MER2_type -2163 243 28 4 918 1233 266 67 8 chr11 43684062 43684419 -78159437 + MTE2a LTR MaLR 1 378 -1 4 918 322 178 14 14 chr11 43684549 43684623 -78159233 - MIRb SINE MIR -145 123 50 4 918 813 356 122 23 chr11 43686006 43686537 -78157319 + MLT1G3 LTR MaLR 1 584 -11 4 918 255 365 164 0 chr11 43687182 43687371 -78156485 - MLT1N2 LTR MaLR -237 325 106 4 918 494 0 33 0 chr11 43688347 43688408 -78155448 + (TATG)n Simple_repeat Simple_repeat 2 64 0 4 918 1017 64 41 0 chr11 43688435 43688606 -78155250 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 4 918 778 231 32 0 chr11 43688633 43688789 -78155067 - RSINE1 SINE B4 0 165 5 4 918 422 178 11 0 chr11 43689784 43689874 -78153982 + (CACCAT)n Simple_repeat Simple_repeat 6 96 0 4 918 870 219 97 0 chr11 43689992 43690188 -78153668 - ID_B1 SINE B4 -5 219 5 4 918 444 51 0 0 chr11 43690241 43690300 -78153556 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 918 605 260 50 6 chr11 43690348 43690530 -78153326 - B4 SINE B4 -59 233 44 4 918 305 306 10 20 chr11 43691481 43691581 -78152275 + MIRb SINE MIR 141 239 -29 4 918 325 283 127 78 chr11 43691745 43691990 -78151866 + B4 SINE B4 2 258 -34 4 918 1177 84 10 0 chr11 43692058 43692261 -78151595 + (CA)n Simple_repeat Simple_repeat 1 205 0 4 918 277 293 32 65 chr11 43692451 43692575 -78151281 - MLT1L LTR MaLR -314 296 177 4 918 353 250 30 28 chr11 43694129 43694236 -78149620 - B3A SINE B2 -17 199 80 4 918 267 290 10 51 chr11 43694320 43694418 -78149438 + RSINE1 SINE B4 3 96 -69 4 918 40 37 0 0 chr11 43696492 43696546 -78147310 + AT_rich Low_complexity Low_complexity 1 54 0 4 918 2105 72 14 0 chr11 43696546 43696822 -78147034 - L1_Mus1 LINE L1 0 6567 6288 4 918 421 294 16 8 chr11 43696828 43696955 -78146901 - B1F1 SINE Alu -6 143 16 4 918 1154 269 61 14 chr11 43697019 43697381 -78146475 - MTE2a LTR MaLR 0 379 1 4 918 22 35 0 0 chr11 43697843 43697872 -78145984 + AT_rich Low_complexity Low_complexity 1 29 0 4 918 234 268 61 0 chr11 43700409 43700491 -78143365 + PB1D9 SINE Alu 29 115 -5 4 918 837 170 147 11 chr11 43700532 43700729 -78143127 + RMER13A LTR ERVK 68 327 -581 4 918 278 216 93 13 chr11 43700781 43700856 -78143000 + RMER13A LTR ERVK 667 747 -113 4 918 1006 254 84 18 chr11 43703599 43703872 -78139984 - B4 SINE B4 0 292 2 5 918 382 310 73 37 chr11 43704082 43704273 -78139583 + MIRb SINE MIR 6 203 -65 5 918 1207 277 8 85 chr11 43704420 43704614 -78139242 + MTEa LTR MaLR 1 183 -196 5 918 963 100 0 37 chr11 43704614 43704801 -78139055 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 918 1207 277 8 85 chr11 43704801 43705005 -78138851 + MTEa LTR MaLR 184 368 -11 5 918 576 230 9 168 chr11 43705506 43705720 -78138136 - ID_B1 SINE B4 -3 221 42 5 918 524 349 72 34 chr11 43706974 43707265 -78136591 + MLT1L LTR MaLR 88 389 -221 5 918 254 290 9 53 chr11 43707555 43707668 -78136188 - MER102b DNA MER1_type -127 214 107 5 918 1668 199 28 23 chr11 43707988 43708231 -78135625 - MTEa LTR MaLR -18 361 117 5 918 1828 136 26 84 chr11 43708231 43708577 -78135279 - ORR1A3 LTR MaLR 0 326 1 5 918 1668 199 28 23 chr11 43708577 43708687 -78135169 - MTEa LTR MaLR -263 116 7 5 918 204 40 0 0 chr11 43708828 43708853 -78135003 + (T)n Simple_repeat Simple_repeat 1 25 0 5 918 243 277 83 21 chr11 43709483 43709579 -78134277 - MTEa LTR MaLR 0 379 278 5 918 844 202 35 6 chr11 43710762 43710936 -78132920 + MTE2b LTR MaLR 1 179 -200 5 918 202 263 0 0 chr11 43711070 43711108 -78132748 + (CG)n Simple_repeat Simple_repeat 2 39 0 5 918 191 323 86 0 chr11 43711299 43711392 -78132464 - MIRc SINE MIR -45 223 123 5 918 210 319 40 50 chr11 43711474 43711573 -78132283 - MIR SINE MIR -120 142 45 5 918 540 30 0 0 chr11 43711798 43711864 -78131992 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 5 918 738 319 13 59 chr11 43711903 43712209 -78131647 - B4 SINE B4 0 292 1 5 918 905 281 5 27 chr11 43712579 43712802 -78131054 - ID_B1 SINE B4 -4 220 3 5 918 796 176 214 11 chr11 43713154 43713332 -78130524 - B3 SINE B2 0 216 3 5 918 233 273 25 38 chr11 43714898 43714978 -78128878 - MIR SINE MIR -74 134 56 5 918 807 139 14 0 chr11 43715023 43715167 -78128689 + URR1B DNA MER1_type 80 225 0 5 918 350 74 0 18 chr11 43715293 43715348 -78128508 + (TCTCC)n Simple_repeat Simple_repeat 3 56 0 5 918 365 281 105 0 chr11 43715359 43715473 -78128383 - ID_B1 SINE B4 -8 216 91 5 918 723 283 64 92 chr11 43715715 43716073 -78127783 + Lx7 LINE L1 7067 7414 -282 5 918 441 0 0 0 chr11 43716086 43716135 -78127721 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 918 540 295 110 39 chr11 43716809 43717063 -78126793 - B4 SINE B4 -20 272 1 5 918 217 283 208 13 chr11 43717065 43717219 -78126637 + MIRb SINE MIR 69 252 -16 5 918 676 203 101 60 chr11 43717992 43718191 -78125665 - URR1A DNA MER1_type -19 207 1 5 918 267 228 143 52 chr11 43718503 43718734 -78125122 + L1M2 LINE L1 1767 2018 -4831 5 918 5514 59 9 0 chr11 43718857 43719536 -78124320 + L1_Mus1 LINE L1 5883 6567 0 5 918 440 257 19 0 chr11 43719569 43719674 -78124182 + B1_Mur4 SINE Alu 34 140 -10 5 918 1738 312 82 35 chr11 43719683 43720956 -78122900 + L1_Mur3 LINE L1 1551 2884 -2996 5 918 1415 269 95 45 chr11 43721373 43721500 -78122356 + L1_Mur3 LINE L1 2874 3000 -2880 5 918 717 217 192 11 chr11 43721500 43721682 -78122174 + B3 SINE B2 1 215 -1 5 918 1415 269 95 45 chr11 43721682 43722395 -78121461 + L1_Mur3 LINE L1 3001 3756 -2124 5 918 1029 222 200 44 chr11 43722407 43722559 -78121297 - ORR1D1 LTR MaLR 0 374 221 5 918 504 0 0 0 chr11 43722559 43722615 -78121241 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 918 1029 222 200 44 chr11 43722615 43722782 -78121074 - ORR1D1 LTR MaLR -154 220 7 5 918 668 111 0 9 chr11 43722869 43722978 -78120878 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 5 918 1572 191 32 122 chr11 43723193 43723604 -78120252 - ORR1D1 LTR MaLR 0 374 1 5 918 815 245 32 5 chr11 43723646 43723867 -78119989 + B4A SINE B4 2 228 -64 5 918 614 60 0 0 chr11 43723867 43723950 -78119906 + B1_Mus1 SINE Alu 1 83 -65 5 918 214 376 19 19 chr11 43724010 43724113 -78119743 - MIR SINE MIR -145 117 15 5 918 2680 93 36 8 chr11 43724508 43724899 -78118957 + L1_Mus3 LINE L1 6233 6634 -4 5 918 773 229 5 75 chr11 43726169 43726382 -78117474 - B3A SINE B2 0 198 1 5 918 371 73 18 0 chr11 43726507 43726562 -78117294 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 5 918 191 240 20 0 chr11 43727131 43727181 -78116675 - L2b LINE L2 -15 3360 3310 5 918 613 288 384 0 chr11 43727255 43727529 -78116327 + MTEa LTR MaLR 1 379 0 5 918 949 197 64 0 chr11 43727881 43728084 -78115772 + URR1B DNA MER1_type 9 224 -1 5 918 411 263 19 39 chr11 43728961 43729064 -78114792 - B3 SINE B2 -28 188 88 5 918 210 245 0 20 chr11 43729060 43729110 -78114746 - B2_Mm2 SINE B2 -145 50 2 5 918 378 0 0 0 chr11 43729185 43729227 -78114629 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 918 2343 225 71 94 chr11 43729228 43730240 -78113616 - RMER1B Other Other -30 1036 95 5 918 284 255 32 11 chr11 43730808 43730903 -78112953 + MTEb LTR MaLR 279 375 -4 5 918 183 344 0 0 chr11 43731001 43731091 -78112765 + MIRb SINE MIR 145 234 -34 5 918 324 0 0 0 chr11 43731646 43731682 -78112174 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 918 657 160 0 0 chr11 43731868 43731993 -78111863 + (TG)n Simple_repeat Simple_repeat 1 125 0 5 918 309 51 0 0 chr11 43732161 43732200 -78111656 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 918 832 226 11 11 chr11 43732203 43732386 -78111470 - B3A SINE B2 -11 187 5 5 918 371 292 83 7 chr11 43732529 43732674 -78111182 - MIRb SINE MIR -27 241 86 5 918 232 362 35 25 chr11 43733299 43733500 -78110356 - MIRc SINE MIR -32 236 34 5 918 201 162 0 0 chr11 43733883 43733920 -78109936 + A-rich Low_complexity Low_complexity 4 40 0 5 918 472 207 6 35 chr11 43734106 43734276 -78109580 + CT-rich Low_complexity Low_complexity 2 166 0 5 918 714 274 69 10 chr11 43734280 43734483 -78109373 - ID_B1 SINE B4 -6 218 4 5 918 719 265 0 0 chr11 43734890 43735037 -78108819 + B1_Mur2 SINE Alu 1 147 -2 5 918 201 121 0 0 chr11 43735043 43735076 -78108780 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 5 918 252 0 0 0 chr11 43735623 43735651 -78108205 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 918 552 311 97 19 chr11 43735686 43735955 -78107901 - B4A SINE B4 -1 291 2 5 918 22 56 0 0 chr11 43735955 43735991 -78107865 + AT_rich Low_complexity Low_complexity 1 36 0 5 918 581 340 0 12 chr11 43736000 43736164 -78107692 - RSINE1 SINE B4 -2 163 2 5 918 435 234 11 0 chr11 43736283 43736377 -78107479 - RMER15 LTR ERVL -110 465 371 5 918 2783 265 48 25 chr11 43736474 43737257 -78106599 - Lx8 LINE L1 -359 7114 6314 5 918 245 91 0 0 chr11 43737271 43737304 -78106552 + MurSatRep1 Unknown Unknown 238 270 -1867 5 918 1197 86 17 8 chr11 43737706 43737902 -78105954 + B2_Mm2 SINE B2 1 202 -14 5 918 294 188 69 23 chr11 43738100 43738187 -78105669 - MTD LTR MaLR -53 366 276 5 918 298 239 16 0 chr11 43738192 43738260 -78105596 + MERVL-int LTR ERVL 4394 4517 -968 5 918 415 287 9 9 chr11 43738313 43738429 -78105427 - MTD LTR MaLR -219 200 85 5 918 602 143 59 39 chr11 43738472 43738625 -78105231 - RCHARR1 DNA MER1_type -68 906 751 5 918 1143 251 55 83 chr11 43738628 43739050 -78104806 - RCHARR1 DNA MER1_type -507 467 58 5 918 24 0 0 0 chr11 43739110 43739134 -78104722 + AT_rich Low_complexity Low_complexity 1 24 0 5 918 311 264 46 15 chr11 43739234 43739365 -78104491 - MER113 DNA MER1_type -299 222 88 5 918 612 0 0 0 chr11 43739558 43739626 -78104230 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 5 918 903 249 9 9 chr11 43740245 43740468 -78103388 + ID_B1 SINE B4 2 224 0 5 918 207 0 0 0 chr11 43740908 43740931 -78102925 + (T)n Simple_repeat Simple_repeat 1 23 0 5 918 616 71 0 0 chr11 43741864 43741949 -78101907 + L1_Mus1 LINE L1 6483 6567 0 5 918 887 109 0 7 chr11 43741954 43742093 -78101763 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 5 918 906 317 48 18 chr11 43743194 43743525 -78100331 - Lx8 LINE L1 -178 7295 6955 5 918 800 37 9 0 chr11 43744510 43744619 -78099237 - B1_Mm SINE Alu 0 147 38 5 918 363 224 188 8 chr11 43744641 43744758 -78099098 - B1_Mus1 SINE Alu 0 148 11 5 918 248 326 5 99 chr11 43745659 43745870 -78097986 - RMER1C Other Other -2 1340 1150 5 918 1053 264 63 0 chr11 43745815 43746084 -78097772 - Lx8 LINE L1 -141 7332 7047 5 918 205 356 86 17 chr11 43746388 43746505 -78097351 - L2 LINE L2 -558 2861 2737 5 918 342 260 142 19 chr11 43746827 43746933 -78096923 + B4 SINE B4 107 225 -67 5 918 401 142 53 9 chr11 43747771 43747837 -78096019 + polypyrimidine Low_complexity Low_complexity 49 120 0 5 918 1012 125 0 22 chr11 43747837 43748017 -78095839 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 5 918 401 142 53 9 chr11 43748017 43748064 -78095792 + polypyrimidine Low_complexity Low_complexity 2 48 0 5 918 271 239 108 95 chr11 43748065 43748296 -78095560 + Lx7 LINE L1 7443 7676 -20 5 918 604 234 158 0 chr11 43748372 43748530 -78095326 - ID_B1 SINE B4 -37 187 5 5 918 313 300 45 30 chr11 43748545 43748679 -78095177 - B1F SINE Alu -9 140 5 5 918 1030 299 18 3 chr11 43749780 43750065 -78093791 - B4A SINE B4 -2 290 2 5 918 666 241 70 12 chr11 43750244 43750416 -78093440 - ID_B1 SINE B4 -9 215 34 5 918 654 294 0 44 chr11 43750430 43750636 -78093220 - B3A SINE B2 -1 197 1 5 918 417 54 0 0 chr11 43750894 43750950 -78092906 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 918 3106 40 5 0 chr11 43751021 43751396 -78092460 - L1Md_F2 LINE L1 -2 6580 6204 5 918 245 377 17 9 chr11 43751412 43751527 -78092329 - MamRep137 DNA TcMar? -54 390 275 5 918 882 147 49 0 chr11 43751874 43752017 -78091839 - B1_Mur4 SINE Alu 0 150 1 5 918 216 158 0 0 chr11 43752755 43752793 -78091063 + GA-rich Low_complexity Low_complexity 3 40 0 6 918 326 159 12 24 chr11 43752976 43753060 -78090796 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 918 703 303 195 14 chr11 43753370 43753795 -78090061 - MLT1D LTR MaLR -1 504 3 6 918 928 280 24 86 chr11 43753873 43754256 -78089600 - ORR1E LTR MaLR 0 359 1 6 918 948 18 0 0 chr11 43755631 43755741 -78088115 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 918 381 22 0 0 chr11 43755743 43755789 -78088067 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 918 488 264 147 36 chr11 43756690 43756914 -78086942 - B4A SINE B4 -35 257 9 6 918 189 0 0 0 chr11 43757659 43757680 -78086176 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 918 2266 111 6 0 chr11 43757864 43758189 -78085667 + ORR1A2 LTR MaLR 1 327 0 6 918 232 316 192 34 chr11 43758571 43758748 -78085108 + MLT1K LTR MaLR 383 587 -8 6 918 185 279 0 0 chr11 43758886 43758929 -78084927 - MIRc SINE MIR -162 106 64 6 918 459 344 45 0 chr11 43759131 43759355 -78084501 + Charlie1b DNA MER1_type 44 277 -246 6 918 498 96 0 0 chr11 43761276 43761349 -78082507 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 6 918 793 277 95 23 chr11 43761390 43761577 -78082279 + B4 SINE B4 8 216 -76 6 918 261 83 0 0 chr11 43761577 43761613 -78082243 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 918 793 277 95 23 chr11 43761613 43761687 -78082169 + B4 SINE B4 217 287 -5 6 918 228 182 0 0 chr11 43761736 43761780 -78082076 + GA-rich Low_complexity Low_complexity 3 46 0 6 918 595 244 139 28 chr11 43761921 43762136 -78081720 + MLT1C LTR MaLR 220 458 -9 6 918 207 125 0 0 chr11 43762899 43762939 -78080917 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 918 308 187 12 74 chr11 43762940 43763021 -78080835 + HAL1-3A_ME LINE L1 1977 2052 -806 6 918 1021 224 96 30 chr11 43764991 43765294 -78078562 + MTE2a LTR MaLR 57 379 0 6 918 2361 208 109 8 chr11 43765462 43765617 -78078239 + RMER1A Other Other 241 415 -615 6 918 186 43 0 0 chr11 43765617 43765640 -78078216 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 6 918 2361 208 109 8 chr11 43765640 43765997 -78077859 + RMER1A Other Other 416 805 -225 6 918 1253 234 89 6 chr11 43765998 43766334 -78077522 - RLTR20B1 LTR ERVK -199 364 1 6 918 276 301 47 24 chr11 43766496 43766581 -78077275 - ID_B1 SINE B4 -57 167 81 6 918 800 279 69 53 chr11 43767032 43767407 -78076449 + MLT1B LTR MaLR 10 390 0 6 918 1458 212 153 8 chr11 43767753 43768119 -78075737 - MTD LTR MaLR 0 419 1 6 918 9846 101 14 17 chr11 43768415 43769852 -78074004 - L1_Mm LINE L1 -909 4974 3543 6 918 1084 185 14 24 chr11 43769860 43770070 -78073786 - B3 SINE B2 -4 212 5 6 918 603 27 0 0 chr11 43770070 43770143 -78073713 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 6 918 333 0 0 0 chr11 43770143 43770180 -78073676 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 918 516 45 0 0 chr11 43770180 43770246 -78073610 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 918 509 244 15 45 chr11 43770247 43770380 -78073476 - RSINE1 SINE B4 -25 140 12 6 918 677 23 11 0 chr11 43772458 43772545 -78071311 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 918 1347 140 53 37 chr11 43772989 43773234 -78070622 + Lx4B LINE L1 6806 7054 -4 6 918 314 189 19 19 chr11 43773249 43773357 -78070499 + (TA)n Simple_repeat Simple_repeat 2 109 0 6 918 218 338 36 58 chr11 43773511 43773649 -78070207 + L2b LINE L2 3225 3359 -16 6 918 421 240 63 76 chr11 43774376 43774534 -78069322 + MIRb SINE MIR 43 198 -70 6 918 519 332 46 18 chr11 43774544 43774762 -78069094 - MIR SINE MIR -9 253 30 6 918 1200 106 0 4 chr11 43775628 43775846 -78068010 + (GGAA)n Simple_repeat Simple_repeat 1 217 0 6 918 432 0 0 0 chr11 43776069 43776117 -78067739 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 918 184 412 0 0 chr11 43776133 43776218 -78067638 - L2a LINE L2 -23 3403 3319 6 918 271 363 52 0 chr11 43776275 43776410 -78067446 - MLT1A0 LTR MaLR -66 299 158 6 918 485 246 9 18 chr11 43776444 43776556 -78067300 - PB1D10 SINE Alu -6 111 1 6 918 5743 57 0 0 chr11 43776579 43777283 -78066573 + L1Md_F2 LINE L1 5875 6578 -4 6 114 2051 293 198 20 chr11 43777898 43779146 -78064710 - MLT1A0-int LTR MaLR -2 1733 264 6 919 244 225 163 33 chr11 43779151 43779243 -78064613 + RMER15 LTR ERVL 1 104 -471 6 919 682 255 107 77 chr11 43779264 43779536 -78064320 + RMER15 LTR ERVL 278 557 -18 6 919 577 268 88 14 chr11 43779545 43779761 -78064095 - MLT1A0-int LTR MaLR -1488 247 16 6 919 513 297 96 15 chr11 43779780 43779978 -78063878 - MLT1A0 LTR MaLR -7 358 145 6 919 265 259 47 58 chr11 43780222 43780308 -78063548 + B3A SINE B2 1 85 -113 6 919 1350 247 74 36 chr11 43780493 43780858 -78062998 + MTEb LTR MaLR 1 379 0 6 919 326 354 69 5 chr11 43781176 43781392 -78062464 - L1MEf LINE L1 -3566 2580 2351 6 919 513 282 66 76 chr11 43781732 43782112 -78061744 - L1MEf LINE L1 -4092 2150 1775 6 919 318 250 195 30 chr11 43782318 43782487 -78061369 - ORR1E LTR MaLR -162 197 1 6 919 243 0 0 0 chr11 43782674 43782701 -78061155 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 919 198 0 0 0 chr11 43782701 43782722 -78061134 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 919 288 297 0 13 chr11 43782756 43782831 -78061025 - RSINE1 SINE B4 -14 151 78 6 919 360 251 99 39 chr11 43783130 43783349 -78060507 + RMER20A LTR ERVK 234 471 -156 6 919 373 232 24 0 chr11 43783708 43783790 -78060066 - L1M3 LINE L1 -1122 5018 4935 6 919 920 258 126 49 chr11 43783886 43784236 -78059620 + MTE2a LTR MaLR 3 379 0 6 919 399 73 0 0 chr11 43784282 43784337 -78059519 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 6 919 422 290 19 0 chr11 43784357 43784464 -78059392 - B1F SINE Alu -40 109 1 6 919 255 301 14 0 chr11 43784405 43784478 -78059378 - B4A SINE B4 -148 144 71 6 919 869 273 58 43 chr11 43784486 43784711 -78059145 - L1M3 LINE L1 -1275 4865 4627 6 919 1185 122 11 0 chr11 43784711 43784891 -78058965 + B2_Mm1t SINE B2 2 183 -10 6 919 869 273 58 43 chr11 43784891 43785063 -78058793 - L1M3 LINE L1 -1514 4626 4462 6 919 279 275 25 0 chr11 43785092 43785172 -78058684 - ID SINE ID -135 89 8 6 919 235 312 31 0 chr11 43785314 43785410 -78058446 - L1MD LINE L1 -1886 4260 4162 6 919 261 288 81 81 chr11 43785683 43785868 -78057988 - MER121 Unknown Unknown -166 246 62 6 919 297 0 0 0 chr11 43786464 43786497 -78057359 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 919 6757 116 17 2 chr11 43786499 43787479 -78056377 - Lx LINE L1 -18 6636 5642 6 919 569 296 82 40 chr11 43788138 43788464 -78055392 - ORR1E LTR MaLR -44 326 1 6 919 22 0 0 0 chr11 43788791 43788813 -78055043 + AT_rich Low_complexity Low_complexity 1 22 0 6 919 6871 190 57 16 chr11 43789605 43791001 -78052855 - Lx5 LINE L1 -4 7046 5594 6 919 803 294 82 88 chr11 43791234 43791577 -78052279 + MTE2b LTR MaLR 1 341 -38 6 919 244 342 0 13 chr11 43792106 43792183 -78051673 + MLT1K LTR MaLR 151 226 -369 6 919 1140 29 0 0 chr11 43792802 43792938 -78050918 + (GGGAGA)n Simple_repeat Simple_repeat 2 137 0 6 919 227 281 40 40 chr11 43794128 43794228 -78049628 + L2c LINE L2 3286 3385 -2 6 919 316 318 0 30 chr11 43794263 43794396 -78049460 - Charlie19a DNA Charlie -128 258 130 6 919 1225 281 57 18 chr11 43794807 43795198 -78048658 + MTD LTR MaLR 2 388 -31 6 919 723 134 0 0 chr11 43795499 43795618 -78048238 + (CAGG)n Simple_repeat Simple_repeat 4 122 0 6 919 984 164 51 0 chr11 43795666 43795843 -78048013 + URR1B DNA MER1_type 40 225 0 6 919 216 244 0 0 chr11 43797421 43797466 -78046390 + B1F SINE Alu 19 63 -86 6 919 235 237 20 10 chr11 43797863 43797961 -78045895 + CT-rich Low_complexity Low_complexity 3 101 0 6 919 659 243 28 0 chr11 43798447 43798591 -78045265 + B1F2 SINE Alu 2 149 0 6 919 209 368 0 14 chr11 43798616 43798754 -78045102 + CT-rich Low_complexity Low_complexity 2 137 0 6 919 216 0 0 0 chr11 43798776 43798800 -78045056 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 6 919 1713 166 70 22 chr11 43799314 43799671 -78044185 + ORR1D1 LTR MaLR 1 374 0 6 919 362 21 21 0 chr11 43800163 43800210 -78043646 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 919 745 254 0 6 chr11 43800492 43800658 -78043198 + B4 SINE B4 90 254 -38 6 919 240 227 0 0 chr11 43800723 43800811 -78043045 + GA-rich Low_complexity Low_complexity 2 89 0 6 919 231 377 16 0 chr11 43801734 43801856 -78042000 - MIRc SINE MIR -144 124 1 6 919 180 300 115 16 chr11 43802225 43802347 -78041509 - MIR SINE MIR -12 250 117 6 919 1205 267 58 44 chr11 43802347 43802711 -78041145 + MTE2b LTR MaLR 11 379 0 6 919 315 191 0 0 chr11 43802739 43802802 -78041054 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 6 919 270 116 0 0 chr11 43802874 43802917 -78040939 + (T)n Simple_repeat Simple_repeat 1 43 0 6 919 372 232 92 59 chr11 43803000 43803119 -78040737 + B3A SINE B2 1 123 -75 6 919 369 0 0 0 chr11 43803136 43803177 -78040679 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 919 315 0 0 0 chr11 43803177 43803211 -78040645 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 919 313 328 43 77 chr11 43804184 43804392 -78039464 - B4A SINE B4 0 292 92 6 919 379 209 18 54 chr11 43804438 43804549 -78039307 - PB1D9 SINE Alu -5 115 9 6 919 395 323 0 0 chr11 43806221 43806317 -78037539 + RSINE1 SINE B4 1 96 -69 6 919 876 276 71 39 chr11 43807164 43807447 -78036409 - MTE2a LTR MaLR -87 292 1 6 919 470 292 14 21 chr11 43807513 43807653 -78036203 + RMER30 DNA MER1_type 6 144 -58 6 919 287 302 95 0 chr11 43807544 43807670 -78036186 - Charlie12 DNA MER1_type -2699 174 37 6 919 496 240 173 13 chr11 43807801 43807957 -78035899 + ORR1E LTR MaLR 2 182 -177 6 919 325 250 0 65 chr11 43807969 43808076 -78035780 + ORR1E LTR MaLR 272 371 -8 6 919 769 211 56 97 chr11 43808451 43808719 -78035137 + RMER17C-int LTR ERVK 2610 2866 -372 7 919 844 264 86 63 chr11 43809094 43809515 -78034341 + RMER10A LTR ERVL 10 429 -13 7 919 207 0 0 0 chr11 43810245 43810268 -78033588 + (T)n Simple_repeat Simple_repeat 1 23 0 7 919 305 202 12 25 chr11 43810586 43810667 -78033189 + (TA)n Simple_repeat Simple_repeat 2 81 0 7 919 274 261 97 11 chr11 43811165 43811258 -78032598 + MER5A1 DNA MER1_type 6 106 -60 7 919 390 287 86 27 chr11 43811320 43811506 -78032350 - MIR SINE MIR -50 212 16 7 919 368 278 135 28 chr11 43811668 43811846 -78032010 + MLT1I LTR MaLR 14 210 -201 7 919 233 336 0 36 chr11 43811888 43811999 -78031857 + MLT1I LTR MaLR 301 407 -4 7 919 664 129 8 8 chr11 43812432 43812557 -78031299 + (TTCC)n Simple_repeat Simple_repeat 1 125 0 7 919 1628 304 20 19 chr11 43812909 43813499 -78030357 + L1MC1 LINE L1 5711 6301 -32 7 919 306 0 0 0 chr11 43814344 43814378 -78029478 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 7 919 228 67 0 0 chr11 43814787 43814817 -78029039 + (CAA)n Simple_repeat Simple_repeat 1 30 0 7 919 1107 60 0 0 chr11 43815291 43815425 -78028431 - B1_Mus2 SINE Alu -13 134 1 7 919 233 367 0 24 chr11 43815478 43815601 -78028255 + L3b LINE CR1 113 232 -250 7 919 216 312 67 45 chr11 43817607 43817741 -78026115 + MIRb SINE MIR 68 204 -64 7 919 199 354 13 0 chr11 43818227 43818306 -78025550 + L2a LINE L2 3341 3420 -6 7 919 477 201 155 43 chr11 43818821 43819008 -78024848 - RMER21B LTR ERV1 -335 507 300 7 919 384 22 0 0 chr11 43819455 43819500 -78024356 + (TATG)n Simple_repeat Simple_repeat 2 46 0 7 919 301 292 25 58 chr11 43819754 43819874 -78023982 + B4A SINE B4 177 292 0 7 919 1757 224 116 14 chr11 43819968 43820461 -78023395 + RMER15 LTR ERVL 27 569 -6 7 919 839 254 14 41 chr11 43820533 43820751 -78023105 + B3 SINE B2 5 216 0 7 919 195 114 0 0 chr11 43821565 43821600 -78022256 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 7 919 510 298 275 18 chr11 43822673 43823179 -78020677 - MER21B LTR ERV1 -227 636 1 7 919 501 267 174 5 chr11 43823577 43823784 -78020072 + MLT1D LTR MaLR 4 245 -260 7 919 525 55 0 0 chr11 43824851 43824924 -78018932 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 919 311 294 139 7 chr11 43824925 43825069 -78018787 - B3 SINE B2 -53 163 1 7 919 560 266 93 31 chr11 43825069 43825289 -78018567 - B4A SINE B4 -53 239 6 7 919 264 262 24 12 chr11 43826266 43826364 -78017492 + GA-rich Low_complexity Low_complexity 1 99 0 7 919 263 282 74 30 chr11 43826398 43826533 -78017323 - ORR1E LTR MaLR -218 141 1 7 919 269 322 92 8 chr11 43827997 43828116 -78015740 + MIRb SINE MIR 1 129 -139 7 919 252 325 101 29 chr11 43828381 43828619 -78015237 + L2a LINE L2 3151 3405 -21 7 919 320 351 47 13 chr11 43830295 43830445 -78013411 - RSINE1 SINE B4 -1 164 10 7 919 352 331 35 21 chr11 43830752 43830897 -78012959 - MLT1K LTR MaLR -22 573 427 7 919 201 321 0 18 chr11 43831606 43831663 -78012193 + L2c LINE L2 3274 3329 -58 7 919 344 266 13 0 chr11 43832196 43832275 -78011581 - ID_B1 SINE B4 -15 209 130 7 919 266 0 29 0 chr11 43832890 43832924 -78010932 + (TGG)n Simple_repeat Simple_repeat 2 36 0 7 919 752 72 47 24 chr11 43833466 43833636 -78010220 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 7 919 445 44 29 0 chr11 43833670 43833738 -78010118 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 7 919 209 83 28 0 chr11 43833965 43834001 -78009855 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 919 952 304 56 7 chr11 43834128 43834433 -78009423 + Tigger7 DNA MER2_type 69 388 -2103 7 919 667 279 28 14 chr11 43834441 43834652 -78009204 + Tigger7 DNA MER2_type 2201 2414 -77 7 919 971 288 14 31 chr11 43835533 43835820 -78008036 - B4A SINE B4 0 292 11 7 919 425 76 15 0 chr11 43835831 43835897 -78007959 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 919 793 256 140 38 chr11 43835959 43836223 -78007633 - B4 SINE B4 0 292 2 7 919 2235 109 24 59 chr11 43836373 43836714 -78007142 + ORR1A4 LTR MaLR 1 329 0 7 919 282 395 120 0 chr11 43836892 43837183 -78006673 + L2 LINE L2 2757 3082 -337 7 919 510 139 0 0 chr11 43837602 43837688 -78006168 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 919 722 281 126 35 chr11 43837688 43837943 -78005913 - B4A SINE B4 0 292 15 7 919 2465 52 19 0 chr11 43838502 43838811 -78005045 - L1_Mus3 LINE L1 -702 5936 5622 7 919 5139 99 8 22 chr11 43838811 43839541 -78004315 + L1_Mus3 LINE L1 5918 6637 -1 7 919 943 77 0 31 chr11 43839546 43839706 -78004150 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 7 919 961 340 0 40 chr11 43840966 43841239 -78002617 + B4A SINE B4 1 262 -30 7 919 267 31 0 0 chr11 43841325 43841357 -78002499 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 7 919 600 111 0 0 chr11 43841522 43841612 -78002244 + (TCC)n Simple_repeat Simple_repeat 3 92 0 7 919 183 306 56 56 chr11 43843102 43843192 -78000664 - L3 LINE CR1 -4 4485 4396 7 919 411 274 168 9 chr11 43844524 43844737 -77999119 + MIRb SINE MIR 16 268 0 7 919 7405 213 69 44 chr11 43844753 43846637 -77997219 - Lx6 LINE L1 -2 7458 5524 7 919 228 121 0 0 chr11 43846638 43846671 -77997185 - Lx6 LINE L1 -643 5243 5211 7 919 18825 173 70 25 chr11 43846644 43851243 -77992613 - L1_Mur3 LINE L1 -107 5770 864 7 919 846 301 69 17 chr11 43851269 43851733 -77992123 - L1_Mur3 LINE L1 -7198 530 43 7 919 236 352 0 11 chr11 43852711 43852803 -77991053 - MLT1E2 LTR MaLR 0 627 537 7 919 1840 334 59 57 chr11 43852846 43853506 -77990350 + Lx8 LINE L1 6420 7070 -403 7 919 977 256 229 14 chr11 43853506 43853851 -77990005 - MTD LTR MaLR 0 419 1 7 919 1840 334 59 57 chr11 43853851 43854191 -77989665 + Lx8 LINE L1 7071 7422 -51 7 919 22 35 0 0 chr11 43854290 43854319 -77989537 + AT_rich Low_complexity Low_complexity 1 29 0 7 919 636 270 56 44 chr11 43854515 43854800 -77989056 - MLT1E2 LTR MaLR -145 360 59 7 919 376 323 111 76 chr11 43854805 43855147 -77988709 + MLT1A LTR MaLR 4 357 -17 7 919 903 204 179 123 chr11 43855280 43855638 -77988218 + MTEa LTR MaLR 2 379 0 7 919 553 292 146 55 chr11 43855747 43856001 -77987855 + B4 SINE B4 1 277 -15 7 919 343 353 50 59 chr11 43856051 43856388 -77987468 - L1ME1 LINE L1 -5 6174 5841 7 919 512 186 0 23 chr11 43856394 43856482 -77987374 - ID_B1 SINE B4 -5 219 134 7 919 21 36 0 0 chr11 43856510 43856538 -77987318 + AT_rich Low_complexity Low_complexity 1 28 0 7 919 1348 238 91 24 chr11 43856556 43856939 -77986917 - MTD LTR MaLR -8 411 3 7 919 626 318 58 0 chr11 43856973 43857146 -77986710 - B3 SINE B2 -23 193 11 7 919 243 262 24 36 chr11 43857151 43857234 -77986622 - L1ME1 LINE L1 -696 5748 5667 7 919 617 274 82 4 chr11 43857263 43857494 -77986362 - L1ME1 LINE L1 -602 5577 5329 7 919 450 0 0 0 chr11 43857505 43857555 -77986301 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 919 298 322 151 20 chr11 43857735 43857881 -77985975 - B4A SINE B4 -2 290 126 7 919 335 287 73 13 chr11 43858338 43858556 -77985300 - L1ME1 LINE L1 -2757 3389 3162 7 919 246 275 128 0 chr11 43858553 43858662 -77985194 - L1ME1 LINE L1 -3143 3003 2881 7 919 212 325 69 38 chr11 43858716 43858876 -77984980 - MIRc SINE MIR -51 217 53 7 919 717 12 0 0 chr11 43858998 43859080 -77984776 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 7 919 248 232 44 9 chr11 43859080 43859184 -77984672 + CT-rich Low_complexity Low_complexity 1 109 0 7 919 311 190 66 77 chr11 43860347 43860438 -77983418 + MER117 DNA MER1_type 68 157 -40 7 919 486 0 0 0 chr11 43861088 43861142 -77982714 + (CAAAC)n Simple_repeat Simple_repeat 5 58 0 7 919 437 237 0 4 chr11 43861217 43861449 -77982407 + (TG)n Simple_repeat Simple_repeat 1 230 0 7 919 603 360 93 70 chr11 43861808 43862281 -77981575 + MLT1K LTR MaLR 22 522 -73 7 919 475 279 0 0 chr11 43862281 43862385 -77981471 - PB1D10 SINE Alu -9 108 5 7 919 603 360 93 70 chr11 43862385 43862472 -77981384 + MLT1K LTR MaLR 523 595 0 7 919 958 175 144 0 chr11 43862584 43862778 -77981078 + URR1B DNA MER1_type 2 223 -2 7 919 492 171 41 0 chr11 43864903 43865026 -77978830 + (TAGA)n Simple_repeat Simple_repeat 1 128 0 7 919 444 37 0 0 chr11 43865082 43865136 -77978720 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 919 654 25 0 0 chr11 43865145 43865225 -77978631 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 7 919 405 0 0 0 chr11 43865423 43865468 -77978388 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 919 1107 248 77 34 chr11 43865861 43866212 -77977644 + MLT1C LTR MaLR 98 463 -4 7 919 232 104 41 20 chr11 43866341 43866390 -77977466 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 7 919 1016 280 22 94 chr11 43866395 43866758 -77977098 - MTEa LTR MaLR -42 337 1 7 919 411 237 0 0 chr11 43866961 43867054 -77976802 + L2a LINE L2 3334 3426 0 7 919 260 344 0 10 chr11 43867052 43867149 -77976707 - MIR SINE MIR -78 184 89 7 919 186 333 60 10 chr11 43867354 43867454 -77976402 - MIR SINE MIR -91 171 67 7 919 201 295 48 16 chr11 43867782 43867844 -77976012 - L2b LINE L2 -61 3314 3251 7 919 207 302 95 0 chr11 43868778 43868841 -77975015 + L2c LINE L2 3319 3387 0 7 919 224 339 39 48 chr11 43869005 43869128 -77974728 + MIR SINE MIR 86 221 -47 7 919 287 335 13 26 chr11 43869689 43869845 -77974011 + GA-rich Low_complexity Low_complexity 5 158 0 7 919 316 200 16 16 chr11 43869942 43870003 -77973853 - B3A SINE B2 -133 65 5 7 919 317 305 40 84 chr11 43870052 43870234 -77973622 + MER102c DNA MER1_type 129 321 -10 7 919 527 299 36 68 chr11 43871677 43871925 -77971931 - MamRep434 DNA TcMar -46 380 141 7 919 1896 199 63 53 chr11 43872102 43872118 -77971738 + MTD LTR MaLR 1 17 -402 7 919 207 100 0 0 chr11 43872118 43872148 -77971708 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 7 919 1896 199 63 53 chr11 43872148 43872546 -77971310 + MTD LTR MaLR 18 418 -1 7 919 254 302 48 40 chr11 43872580 43872704 -77971152 - MIRm SINE MIR -104 164 40 7 919 585 64 0 0 chr11 43874173 43874251 -77969605 + (GA)n Simple_repeat Simple_repeat 2 79 0 7 919 1236 284 50 9 chr11 43874318 43874655 -77969201 - MTE2b LTR MaLR 0 379 29 7 919 189 257 84 84 chr11 43874855 43874962 -77968894 + MIR SINE MIR 47 148 -60 7 919 778 270 23 23 chr11 43875137 43875353 -77968503 + B3 SINE B2 1 216 0 8 919 185 196 0 19 chr11 43875519 43875571 -77968285 + CT-rich Low_complexity Low_complexity 4 54 0 8 919 195 42 0 0 chr11 43876264 43876288 -77967568 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 919 25 0 0 0 chr11 43876390 43876415 -77967441 + AT_rich Low_complexity Low_complexity 1 25 0 8 919 414 296 30 35 chr11 43876913 43877050 -77966806 + B1F1 SINE Alu 2 129 -20 8 919 216 353 35 0 chr11 43877460 43877576 -77966280 + (TATATG)n Simple_repeat Simple_repeat 3 122 0 8 919 1139 246 89 53 chr11 43877966 43878326 -77965530 - MTEa LTR MaLR 0 379 7 8 919 1532 239 91 21 chr11 43878775 43879160 -77964696 + MTD LTR MaLR 8 419 0 8 919 285 29 0 0 chr11 43879579 43879613 -77964243 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 8 919 248 233 0 16 chr11 43881291 43881352 -77962504 + CT-rich Low_complexity Low_complexity 1 60 0 8 919 219 229 0 0 chr11 43881353 43881414 -77962442 + (CAT)n Simple_repeat Simple_repeat 1 61 0 8 919 3526 41 5 0 chr11 43881683 43882077 -77961779 - MTA_Mm LTR MaLR 0 396 1 8 919 304 239 0 43 chr11 43882751 43882843 -77961013 + L1MC5 LINE L1 7806 7893 -68 8 919 368 294 46 29 chr11 43882841 43883016 -77960840 + L1M4 LINE L1 2686 2863 -3283 8 919 243 0 0 0 chr11 43883075 43883102 -77960754 + (CATA)n Simple_repeat Simple_repeat 1 27 0 8 919 435 286 61 26 chr11 43883103 43883415 -77960441 + L1M4 LINE L1 4174 4496 -1650 8 919 566 289 202 15 chr11 43883923 43884240 -77959616 - L1M4 LINE L1 -2314 3832 3464 8 919 303 28 0 0 chr11 43884570 43884606 -77959250 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 919 943 271 19 26 chr11 43884636 43884905 -77958951 - B4A SINE B4 -23 269 3 8 919 854 267 21 66 chr11 43885694 43885935 -77957921 + B4A SINE B4 4 233 -59 8 919 287 292 29 59 chr11 43886089 43886191 -77957665 + RMER15 LTR ERVL 61 159 -416 8 919 913 223 172 0 chr11 43886219 43886452 -77957404 + RMER15 LTR ERVL 267 539 -36 8 919 303 263 157 68 chr11 43887118 43887265 -77956591 - MER117 DNA MER1_type -34 163 4 8 919 5163 174 65 2 chr11 43887369 43888219 -77955637 - Lx5 LINE L1 0 7050 6148 8 919 438 357 54 12 chr11 43889091 43889349 -77954507 - MLT1K LTR MaLR -167 428 160 8 919 1736 197 47 16 chr11 43889688 43890070 -77953786 + MTD LTR MaLR 12 405 -14 8 919 525 221 53 82 chr11 43890348 43890555 -77953301 + MER31A LTR ERV1 1 201 -284 8 919 696 279 36 31 chr11 43890585 43890781 -77953075 + B3A SINE B2 9 205 -11 8 919 648 259 69 48 chr11 43890800 43891031 -77952825 + MER31A LTR ERV1 230 465 -20 8 919 434 288 73 62 chr11 43891171 43891349 -77952507 + B3 SINE B2 34 213 -3 8 919 236 111 0 22 chr11 43891417 43891463 -77952393 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 919 7973 87 13 3 chr11 43891501 43893310 -77950546 - L1_Mus3 LINE L1 -2 6636 4810 8 919 404 264 78 42 chr11 43893581 43893798 -77950058 - L1ME3B LINE L1 -355 5885 5661 8 919 385 249 127 31 chr11 43893825 43894053 -77949803 - L1ME3B LINE L1 -1808 4338 4089 8 919 238 282 14 0 chr11 43894078 43894149 -77949707 + LTR16A LTR ERVL 26 97 -354 8 919 338 366 35 30 chr11 43894227 43894458 -77949398 + LTR16A LTR ERVL 206 437 -14 8 919 23 33 0 0 chr11 43894590 43894620 -77949236 + AT_rich Low_complexity Low_complexity 1 30 0 8 919 271 274 83 33 chr11 43894745 43894866 -77948990 + MLT1H2 LTR MaLR 352 478 -11 8 919 300 247 153 27 chr11 43895004 43895154 -77948702 + MIR SINE MIR 10 178 -84 8 919 329 297 15 119 chr11 43895399 43895533 -77948323 + MER21B LTR ERV1 179 298 -565 8 919 971 289 73 11 chr11 43895541 43895895 -77947961 - MTEb LTR MaLR -3 376 1 8 919 680 339 90 58 chr11 43895896 43896309 -77947547 + MER21B LTR ERV1 306 731 -132 8 919 244 291 26 26 chr11 43897580 43897693 -77946163 + GA-rich Low_complexity Low_complexity 3 115 0 8 919 660 293 60 5 chr11 43897853 43898052 -77945804 + Lx8 LINE L1 6906 7115 -358 8 919 21 82 0 0 chr11 43898168 43898217 -77945639 + AT_rich Low_complexity Low_complexity 1 49 0 8 919 665 242 30 55 chr11 43898323 43898524 -77945332 - B3 SINE B2 -13 203 8 8 919 234 293 13 13 chr11 43898801 43898877 -77944979 + CT-rich Low_complexity Low_complexity 3 78 0 8 919 499 149 11 0 chr11 43899204 43899291 -77944565 - MTC LTR MaLR -333 88 1 8 919 2358 136 78 15 chr11 43899701 43900097 -77943759 - MTC LTR MaLR 0 421 1 8 919 653 242 0 44 chr11 43900362 43900522 -77943334 + B3A SINE B2 12 164 -34 8 919 250 235 72 14 chr11 43901121 43901190 -77942666 - B4A SINE B4 0 292 220 8 919 383 189 148 22 chr11 43901213 43901348 -77942508 - Lx8 LINE L1 -2 7471 7320 8 919 968 230 5 0 chr11 43901382 43901578 -77942278 - B3 SINE B2 -11 205 9 8 919 479 209 0 0 chr11 43901572 43901658 -77942198 - B4A SINE B4 -59 233 148 8 919 366 351 91 0 chr11 43901879 43902033 -77941823 + MER58A DNA MER1_type 11 178 -46 8 919 27 0 0 0 chr11 43902086 43902113 -77941743 + AT_rich Low_complexity Low_complexity 1 27 0 8 919 300 308 84 35 chr11 43903775 43903977 -77939879 + MIRc SINE MIR 44 255 -13 8 919 407 19 0 19 chr11 43904429 43904482 -77939374 + (TGG)n Simple_repeat Simple_repeat 1 52 0 8 919 3061 237 63 104 chr11 43904581 43905537 -77938319 - RMER1C Other Other 0 1342 426 8 919 877 255 46 66 chr11 43905541 43905889 -77937967 - RLTR14 LTR ERV1 -41 341 1 8 919 437 287 37 20 chr11 43906324 43906515 -77937341 - L1MB5 LINE L1 0 6184 5991 8 919 523 318 35 55 chr11 43907354 43907610 -77936246 - RLTR26 LTR ERVK -204 438 188 8 919 579 260 98 139 chr11 43907778 43908167 -77935689 - MTD LTR MaLR -24 395 23 8 919 659 285 100 37 chr11 43908480 43908750 -77935106 + B4 SINE B4 2 288 -4 8 920 875 301 50 63 chr11 43909594 43909974 -77933882 - MTE2b LTR MaLR -4 375 1 8 920 186 43 0 0 chr11 43910421 43910444 -77933412 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 8 920 643 278 20 25 chr11 43910748 43910944 -77932912 - B3A SINE B2 0 198 4 8 920 185 370 22 0 chr11 43911553 43911645 -77932211 - MIR SINE MIR -95 167 74 8 920 898 143 0 41 chr11 43912983 43913129 -77930727 + B1_Mus1 SINE Alu 2 141 -7 8 920 189 0 0 0 chr11 43913131 43913152 -77930704 + (CAA)n Simple_repeat Simple_repeat 1 21 0 8 920 206 264 0 0 chr11 43913656 43913709 -77930147 + MIR SINE MIR 175 227 -35 8 920 550 245 112 0 chr11 43913892 43914035 -77929821 - RSINE1 SINE B4 -4 161 3 8 920 263 274 40 50 chr11 43914066 43914166 -77929690 - MTEb LTR MaLR -8 371 273 8 920 326 280 50 0 chr11 43914841 43914941 -77928915 + MTEa LTR MaLR 275 379 0 8 920 404 333 12 47 chr11 43917414 43917568 -77926288 + RSINE1 SINE B4 2 150 -15 8 920 225 0 0 0 chr11 43917568 43917593 -77926263 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 920 404 333 12 47 chr11 43917593 43917608 -77926248 + RSINE1 SINE B4 151 165 0 8 920 216 158 0 0 chr11 43917609 43917647 -77926209 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 8 920 866 202 15 63 chr11 43917703 43917909 -77925947 + B3A SINE B2 2 197 -1 8 920 1169 253 27 103 chr11 43918110 43918519 -77925337 - MTE2b LTR MaLR -1 378 1 8 920 370 282 45 9 chr11 43919669 43919780 -77924076 + MTEa LTR MaLR 16 130 -249 8 920 656 274 73 76 chr11 43919798 43920141 -77923715 + MT2A LTR ERVL 192 533 0 8 920 412 322 35 15 chr11 43920557 43920759 -77923097 + L2 LINE L2 2252 2457 -962 8 920 444 131 40 10 chr11 43920821 43920921 -77922935 + CT-rich Low_complexity Low_complexity 1 103 0 8 920 691 280 22 11 chr11 43920931 43921115 -77922741 - ID_B1 SINE B4 -37 187 2 8 920 212 342 176 43 chr11 43921119 43921495 -77922361 + L2 LINE L2 2458 2883 -536 8 920 451 305 95 6 chr11 43921749 43921917 -77921939 - MER58A DNA MER1_type -13 211 29 8 920 333 0 0 0 chr11 43924354 43924391 -77919465 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 920 518 349 34 19 chr11 43924402 43924668 -77919188 - B4A SINE B4 -20 272 3 8 920 530 303 32 41 chr11 43925295 43925515 -77918341 - MIRb SINE MIR -1 267 50 8 920 219 329 13 26 chr11 43925641 43925719 -77918137 + RSINE1 SINE B4 2 78 -87 8 920 360 0 0 0 chr11 43926052 43926092 -77917764 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 920 593 324 0 12 chr11 43926096 43926268 -77917588 - B3A SINE B2 -28 170 1 8 920 219 328 94 52 chr11 43926435 43926647 -77917209 + L2c LINE L2 3060 3280 -107 8 920 29 28 0 0 chr11 43927249 43927285 -77916571 + AT_rich Low_complexity Low_complexity 1 36 0 8 920 948 278 81 27 chr11 43928122 43928455 -77915401 + ORR1E LTR MaLR 4 354 -5 8 920 555 16 0 0 chr11 43929754 43929818 -77914038 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 920 307 196 0 0 chr11 43930151 43930207 -77913649 + tRNA-Lys-AAG tRNA tRNA 21 76 0 8 920 785 209 20 18 chr11 43930487 43930694 -77913162 - BGLII_B LTR ERVK -8 433 173 8 920 1308 181 49 3 chr11 43930694 43930982 -77912874 + Lx4B LINE L1 1526 1826 -4051 8 920 13850 150 37 18 chr11 43931003 43931111 -77912745 + Lx4B LINE L1 3369 3474 -2403 8 920 297 0 61 20 chr11 43931111 43931160 -77912696 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 8 920 13850 159 39 34 chr11 43931160 43934042 -77909814 + Lx4B LINE L1 3475 6310 -748 8 920 4286 28 4 6 chr11 43934042 43934546 -77909310 - L1Md_F2 LINE L1 -1 6581 6079 8 920 4818 201 47 108 chr11 43934546 43935311 -77908545 + Lx4B LINE L1 6311 7054 -4 8 920 26 0 0 0 chr11 43935462 43935488 -77908368 + AT_rich Low_complexity Low_complexity 1 26 0 8 920 285 174 81 11 chr11 43935526 43935613 -77908243 - L1M3 LINE L1 -812 5328 5236 8 920 512 275 91 39 chr11 43935610 43935901 -77907955 + L1MA7 LINE L1 5966 6271 -20 8 920 773 124 8 0 chr11 43935960 43936089 -77907767 + (GGA)n Simple_repeat Simple_repeat 2 131 0 8 920 409 258 101 35 chr11 43936679 43936848 -77907008 - MER58A DNA MER1_type -3 221 42 8 920 1924 161 26 60 chr11 43938075 43938490 -77905366 + MTB_Mm LTR MaLR 1 401 -6 8 920 319 322 12 49 chr11 43938490 43938653 -77905203 + RSINE1 SINE B4 5 161 -4 8 920 1280 153 32 5 chr11 43939404 43939621 -77904235 - URR1A DNA MER1_type -3 223 1 9 920 217 367 0 35 chr11 43939752 43939865 -77903991 + MER5A DNA MER1_type 57 165 -24 9 920 711 279 35 0 chr11 43940032 43940241 -77903615 - ID_B1 SINE B4 0 224 9 9 920 697 223 161 75 chr11 43941397 43941664 -77902192 + B4A SINE B4 2 291 -1 9 920 665 204 11 0 chr11 43941677 43941853 -77902003 + (CATA)n Simple_repeat Simple_repeat 1 178 0 9 920 556 327 67 20 chr11 43943428 43943681 -77900175 + L1MA4 LINE L1 5672 5936 -364 9 920 201 143 0 0 chr11 43943682 43943717 -77900139 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 920 183 80 0 0 chr11 43943854 43943879 -77899977 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 920 235 333 29 43 chr11 43944156 43944294 -77899562 - MER20 DNA MER1_type -58 161 26 9 920 194 0 0 37 chr11 43944588 43944615 -77899241 + (TTATA)n Simple_repeat Simple_repeat 1 26 0 9 920 55 16 0 0 chr11 43944615 43944677 -77899179 + AT_rich Low_complexity Low_complexity 1 62 0 9 920 738 255 115 0 chr11 43944860 43945052 -77898804 - B3 SINE B2 -1 215 2 9 920 182 375 0 0 chr11 43945075 43945131 -77898725 + MIR SINE MIR 32 87 -175 9 920 1020 266 53 89 chr11 43945566 43945925 -77897931 + MTE2b LTR MaLR 27 372 -7 9 920 1000 263 86 39 chr11 43946080 43946416 -77897440 - ORR1E LTR MaLR -6 353 2 9 920 1222 295 84 42 chr11 43947279 43948167 -77895689 - L1M4 LINE L1 -2378 3768 2843 9 920 267 144 360 0 chr11 43948177 43948288 -77895568 - L1M4b LINE L1 -7140 194 44 9 920 911 207 113 5 chr11 43948583 43948787 -77895069 - URR1A DNA MER1_type 0 226 1 9 920 201 308 0 0 chr11 43948836 43948888 -77894968 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 920 304 172 39 48 chr11 43949934 43950038 -77893818 + A-rich Low_complexity Low_complexity 2 104 0 9 920 270 321 12 12 chr11 43950223 43950305 -77893551 + PB1D10 SINE Alu 1 82 -35 9 920 727 159 0 13 chr11 43950305 43950458 -77893398 + GA-rich Low_complexity Low_complexity 2 152 0 9 920 185 304 43 0 chr11 43950892 43950961 -77892895 + MIR3 SINE MIR 127 198 -10 9 920 789 316 84 26 chr11 43951079 43951543 -77892313 + L1ME3A LINE L1 5669 6159 -14 9 920 831 179 0 0 chr11 43952079 43952258 -77891598 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 920 792 195 0 0 chr11 43952285 43952459 -77891397 + (TG)n Simple_repeat Simple_repeat 1 174 0 9 920 825 277 45 40 chr11 43952459 43952827 -77891029 + MTE2a LTR MaLR 1 375 -44 9 920 315 0 0 0 chr11 43952827 43952862 -77890994 + (T)n Simple_repeat Simple_repeat 1 35 0 9 920 320 301 62 36 chr11 43953103 43953296 -77890560 - MLT1C LTR MaLR -2 465 268 9 920 436 324 88 12 chr11 43953430 43953611 -77890245 - MLT1C LTR MaLR 0 467 222 9 920 555 16 0 0 chr11 43953611 43953675 -77890181 + (TC)n Simple_repeat Simple_repeat 1 64 0 9 920 421 333 66 96 chr11 43953675 43953795 -77890061 - MLT1C LTR MaLR -169 221 98 9 920 768 22 0 0 chr11 43953860 43953950 -77889906 + (TC)n Simple_repeat Simple_repeat 1 90 0 9 920 351 0 0 0 chr11 43953950 43953988 -77889868 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 920 2257 142 40 12 chr11 43954090 43954491 -77889365 - MTC LTR MaLR -8 413 2 9 920 1656 253 22 7 chr11 43954491 43954904 -77888952 - MT2A LTR ERVL -113 420 2 9 920 989 268 89 36 chr11 43955174 43955534 -77888322 + MTE2b LTR MaLR 1 379 0 9 920 385 268 10 0 chr11 43955797 43955894 -77887962 - MER117 DNA MER1_type -35 162 65 9 920 337 310 165 35 chr11 43956062 43956316 -77887540 + MER113 DNA MER1_type 55 341 -180 9 920 224 242 60 15 chr11 43957494 43957561 -77886295 + MIR SINE MIR 28 97 -165 9 920 347 286 7 48 chr11 43957832 43958002 -77885854 - L1M4 LINE L1 -881 5265 5106 9 920 184 331 62 8 chr11 43958111 43958239 -77885617 - MIRc SINE MIR -110 158 24 9 920 1042 286 70 27 chr11 43958578 43958991 -77884865 + RMER5 LTR ERV1 1 431 -103 9 920 1876 154 47 12 chr11 43958999 43959341 -77884515 - ORR1D1 LTR MaLR -12 362 9 9 920 487 192 9 19 chr11 43959353 43959459 -77884397 + RMER5 LTR ERV1 430 534 0 9 920 252 233 158 0 chr11 43959645 43959733 -77884123 + MLT1E1 LTR MaLR 16 117 -443 9 920 316 323 67 41 chr11 43960307 43960501 -77883355 - LTR82B Low_complexity ERVL -474 356 158 9 920 344 288 28 28 chr11 43960404 43960547 -77883309 - LTR82B Low_complexity ERVL -674 156 14 9 920 266 125 0 20 chr11 43960843 43960892 -77882964 + (GAA)n Simple_repeat Simple_repeat 2 49 0 9 920 498 139 0 0 chr11 43960888 43960974 -77882882 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 9 920 529 335 122 0 chr11 43961161 43961448 -77882408 - MLT1A0 LTR MaLR -2 363 42 9 920 2592 187 100 2 chr11 43961462 43962004 -77881852 + Lx3C LINE L1 6353 6947 -29 9 920 22 35 0 0 chr11 43962020 43962049 -77881807 + AT_rich Low_complexity Low_complexity 1 29 0 9 920 441 0 0 0 chr11 43962180 43962229 -77881627 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 920 1035 287 89 18 chr11 43962844 43963224 -77880632 - MTD LTR MaLR -12 407 1 9 920 334 228 59 77 chr11 43963282 43963450 -77880406 + MIR SINE MIR 42 208 -60 9 920 303 28 0 0 chr11 43963506 43963542 -77880314 + (CAT)n Simple_repeat Simple_repeat 3 38 0 9 920 180 111 0 0 chr11 43963542 43963569 -77880287 + (CAA)n Simple_repeat Simple_repeat 3 29 0 9 920 1558 224 27 19 chr11 43965410 43965775 -77878081 - ORR1D2 LTR MaLR -2 368 1 9 920 629 183 0 51 chr11 43965827 43965965 -77877891 + B1_Mus1 SINE Alu 18 148 0 9 920 565 232 104 40 chr11 43966077 43966279 -77877577 - B3 SINE B2 0 216 2 9 920 245 318 137 48 chr11 43966307 43966555 -77877301 - Lx8 LINE L1 -2 7471 7202 9 920 341 199 144 78 chr11 43966606 43966759 -77877097 + L1M5 LINE L1 5326 5488 -674 9 920 719 272 0 11 chr11 43966813 43966995 -77876861 + B3A SINE B2 1 180 -18 9 920 595 245 35 14 chr11 43967032 43967173 -77876683 + B3A SINE B2 1 144 -54 9 920 575 126 0 37 chr11 43967805 43967912 -77875944 + PB1D9 SINE Alu 17 119 -1 9 920 435 272 19 0 chr11 43968307 43968410 -77875446 + PB1D7 SINE Alu 8 112 -8 9 920 219 220 0 0 chr11 43968413 43968463 -77875393 + GA-rich Low_complexity Low_complexity 1 50 0 9 920 315 0 0 0 chr11 43968772 43968807 -77875049 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 920 507 17 0 0 chr11 43969435 43969495 -77874361 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 920 297 279 47 28 chr11 43970186 43970293 -77873563 - MIRb SINE MIR -52 216 108 9 920 338 186 0 11 chr11 43970455 43970542 -77873314 + CT-rich Low_complexity Low_complexity 2 87 0 9 920 371 303 32 76 chr11 43970612 43970841 -77873015 - B4A SINE B4 -67 225 2 9 920 1758 249 29 11 chr11 43971448 43971902 -77871954 - MT2A LTR ERVL -71 462 1 9 920 573 217 0 9 chr11 43972922 43973038 -77870818 + PB1D10 SINE Alu 3 117 0 9 920 202 247 118 41 chr11 43973535 43973704 -77870152 - L2 LINE L2 -919 2500 2319 9 920 647 318 58 63 chr11 43973706 43974088 -77869768 + MER21B LTR ERV1 1 380 -483 9 920 929 253 53 90 chr11 43974108 43974430 -77869426 + MTD LTR MaLR 18 327 -92 9 920 1580 232 35 8 chr11 43975287 43975656 -77868200 - MTEb LTR MaLR 0 379 1 9 920 186 43 0 0 chr11 43976511 43976534 -77867322 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 920 691 236 45 40 chr11 43976709 43976908 -77866948 + ID_B1 SINE B4 1 200 -24 9 920 519 17 0 0 chr11 43976913 43976973 -77866883 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 920 391 318 113 0 chr11 43976973 43977160 -77866696 + MLT1A0 LTR MaLR 148 356 -9 9 920 2902 40 71 26 chr11 43978670 43979052 -77864804 - L1_Mus3 LINE L1 -652 5986 5588 9 920 1299 63 36 20 chr11 43979056 43979251 -77864605 + L1_Mus3 LINE L1 6437 6634 -4 9 920 297 263 13 0 chr11 43979406 43979482 -77864374 - Charlie4z DNA MER1_type -77 90 14 9 920 3524 10 0 0 chr11 43979844 43980235 -77863621 + L1Md_A LINE L1 6192 6582 0 9 920 496 371 14 9 chr11 43981996 43982208 -77861648 + MER58A DNA MER1_type 11 223 -1 9 920 288 254 30 50 chr11 43982755 43982879 -77860977 + MIRc SINE MIR 30 158 -50 9 920 332 342 47 108 chr11 43983111 43983160 -77860696 + MLT1A LTR MaLR 1 49 -325 9 920 1326 230 22 113 chr11 43983160 43983567 -77860289 - ORR1D2 LTR MaLR 0 370 1 9 920 332 342 47 108 chr11 43983567 43983904 -77859952 + MLT1A LTR MaLR 50 363 -11 9 920 324 0 0 0 chr11 43984065 43984101 -77859755 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9 920 235 331 98 13 chr11 43984212 43984365 -77859491 + MIRb SINE MIR 42 207 -61 9 920 794 316 64 98 chr11 43984421 43984983 -77858873 - MLT1F2 LTR MaLR -9 551 9 9 920 1136 283 102 83 chr11 43985041 43985658 -77858198 - MER82 DNA MER2_type -6 647 19 9 920 510 17 0 0 chr11 43986448 43986507 -77857349 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 920 605 300 0 32 chr11 43986647 43986802 -77857054 - RSINE1 SINE B4 -13 152 3 9 920 870 269 13 34 chr11 43986843 43987078 -77856778 - B4 SINE B4 -59 233 4 9 920 558 43 0 0 chr11 43987805 43987874 -77855982 + (TC)n Simple_repeat Simple_repeat 2 70 0 9 920 531 0 0 0 chr11 43988502 43988561 -77855295 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 920 1081 93 70 25 chr11 43989056 43989255 -77854601 - Lx2B LINE L1 -3 6997 6790 9 920 376 136 0 0 chr11 43989255 43989314 -77854542 + B2_Mm2 SINE B2 14 72 -123 9 920 484 296 46 0 chr11 43989478 43989630 -77854226 - MER58A DNA MER1_type -16 208 50 9 920 894 335 40 0 chr11 43990283 43990561 -77853295 + B4A SINE B4 1 289 -3 1 920 342 267 111 48 chr11 43991549 43991737 -77852119 - MLT1L LTR MaLR -14 596 379 1 920 297 0 0 0 chr11 43992170 43992203 -77851653 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 920 345 286 149 25 chr11 43993514 43993790 -77850066 + L1M4 LINE L1 4920 5229 -917 1 920 23 54 0 0 chr11 43993851 43993888 -77849968 + AT_rich Low_complexity Low_complexity 1 37 0 1 920 718 160 46 0 chr11 43994058 43994189 -77849667 + B1_Mus2 SINE Alu 11 147 0 1 920 321 286 44 29 chr11 43994217 43994372 -77849484 + L1M4 LINE L1 5469 5625 -548 1 920 381 278 0 0 chr11 43994448 43994538 -77849318 - PB1D10 SINE Alu -17 100 11 1 920 613 246 44 39 chr11 43994568 43994750 -77849106 + B3A SINE B2 1 183 -15 1 920 351 281 50 50 chr11 43994772 43994974 -77848882 + L1MC LINE L1 4732 4933 -1213 1 920 429 20 0 0 chr11 43994988 43995038 -77848818 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 1 920 585 166 0 73 chr11 43995222 43995478 -77848378 + (TA)n Simple_repeat Simple_repeat 1 237 0 1 920 330 257 195 21 chr11 43995478 43995874 -77847982 + L1M4 LINE L1 4948 5432 -742 1 920 328 266 82 38 chr11 43995914 43995934 -77847922 + L1M4 LINE L1 62 81 -6461 1 920 516 16 0 0 chr11 43995934 43995995 -77847861 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 920 328 266 82 38 chr11 43995995 43996158 -77847698 + L1M4 LINE L1 82 253 -6289 1 920 460 329 53 21 chr11 43996205 43996488 -77847368 + L1M4 LINE L1 450 741 -5801 1 920 529 341 67 32 chr11 43997026 43997308 -77846548 + MLT1A0 LTR MaLR 64 355 -10 1 920 427 318 27 0 chr11 43998200 43998310 -77845546 + ORR1E LTR MaLR 6 118 -241 1 920 1042 277 38 24 chr11 43998410 43998780 -77845076 - MTEa LTR MaLR -4 375 1 1 920 423 278 0 0 chr11 43998780 43998865 -77844991 + ORR1E LTR MaLR 281 365 -14 1 920 347 346 39 0 chr11 44000004 44000160 -77843696 + LTR33 LTR ERVL 298 459 -56 1 920 454 276 50 25 chr11 44000298 44000458 -77843398 + MTEb LTR MaLR 61 224 -155 2 920 622 254 53 21 chr11 44000457 44000646 -77843210 + MTEb LTR MaLR 181 375 -4 2 920 453 36 0 0 chr11 44001063 44001118 -77842738 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 3 920 354 23 0 0 chr11 44001118 44001160 -77842696 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 4 920 848 251 101 43 chr11 44002595 44002671 -77841185 + B4 SINE B4 9 82 -210 5 920 279 0 0 0 chr11 44002671 44002702 -77841154 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 920 848 251 101 43 chr11 44002702 44002883 -77840973 + B4 SINE B4 83 281 -11 5 920 231 36 0 0 chr11 44002925 44002953 -77840903 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 920 186 167 0 0 chr11 44003274 44003310 -77840546 + (ATTG)n Simple_repeat Simple_repeat 4 39 0 8 920 369 191 44 0 chr11 44003314 44003382 -77840474 - ID4_ SINE ID -8 75 5 9 920 351 317 120 16 chr11 44003568 44003751 -77840105 - MIRb SINE MIR -54 214 13 1 920 569 304 102 58 chr11 44003781 44004123 -77839733 + ORR1E LTR MaLR 1 357 -2 1 920 308 335 110 45 chr11 44004585 44004785 -77839071 - MLT1K LTR MaLR -149 446 234 1 920 242 233 17 0 chr11 44005076 44005136 -77838720 - MIR3 SINE MIR -10 198 138 1 920 324 0 0 0 chr11 44006366 44006402 -77837454 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 920 259 335 88 42 chr11 44006884 44007099 -77836757 + Charlie14a DNA MER1_type 931 1155 -9 1 920 264 292 41 10 chr11 44007605 44007702 -77836154 - MER5A DNA MER1_type -5 184 85 1 920 1137 263 72 28 chr11 44008479 44008842 -77835014 + MTE2a LTR MaLR 1 379 0 1 920 316 259 46 23 chr11 44008915 44009002 -77834854 - ID_B1 SINE B4 -14 210 122 1 920 22 35 0 0 chr11 44010002 44010031 -77833825 + AT_rich Low_complexity Low_complexity 1 29 0 1 920 318 80 0 0 chr11 44010581 44010631 -77833225 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 920 598 297 135 15 chr11 44011038 44011298 -77832558 + B4A SINE B4 2 292 0 2 920 258 376 49 24 chr11 44011685 44011851 -77832005 - MIRb SINE MIR -90 186 17 2 920 1752 167 106 14 chr11 44012200 44012558 -77831298 + ORR1B1 LTR MaLR 1 391 -3 2 920 2969 52 8 3 chr11 44012789 44013172 -77830684 - L1_Mus3 LINE L1 -5 6633 6249 2 920 493 338 26 35 chr11 44013557 44013787 -77830069 + MIRb SINE MIR 33 260 -8 2 920 338 307 71 111 chr11 44014354 44014706 -77829150 + ORR1E LTR MaLR 21 358 -1 2 920 679 309 57 14 chr11 44014839 44015118 -77828738 + B4A SINE B4 2 292 0 2 920 794 129 7 0 chr11 44017204 44017344 -77826512 - ORR1B1 LTR MaLR -253 141 1 2 920 290 80 20 0 chr11 44017378 44017428 -77826428 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2 920 365 294 65 98 chr11 44017839 44018054 -77825802 - MER102a DNA MER1_type -93 237 30 3 920 818 317 58 15 chr11 44018143 44018486 -77825370 + L1M5 LINE L1 5444 5801 -439 3 920 301 343 82 20 chr11 44018633 44018779 -77825077 - L2b LINE L2 -2 3373 3219 3 920 630 141 0 0 chr11 44019421 44019563 -77824293 + (TG)n Simple_repeat Simple_repeat 2 143 0 3 920 260 137 0 19 chr11 44020014 44020066 -77823790 + CT-rich Low_complexity Low_complexity 3 53 0 3 920 725 333 83 49 chr11 44022079 44022606 -77821250 + MLT2B3 LTR ERVL 1 545 -9 3 920 407 290 29 7 chr11 44022642 44022781 -77821075 + MIR3 SINE MIR 49 190 -18 3 920 266 310 10 20 chr11 44023508 44023610 -77820246 + (CA)n Simple_repeat Simple_repeat 1 101 0 3 920 185 0 0 39 chr11 44023741 44023767 -77820089 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 3 920 254 318 79 40 chr11 44024940 44025117 -77818739 - MER33 DNA MER1_type -130 194 11 3 920 180 0 0 0 chr11 44025999 44026019 -77817837 + (G)n Simple_repeat Simple_repeat 1 20 0 4 920 1204 54 0 0 chr11 44026019 44026157 -77817699 - B1_Mus1 SINE Alu -8 140 3 4 920 187 300 143 66 chr11 44026695 44026877 -77816979 + MIR SINE MIR 66 261 -1 4 920 258 314 0 23 chr11 44026977 44027065 -77816791 - MamRep434 DNA TcMar -335 91 6 4 920 750 240 0 27 chr11 44027526 44027676 -77816180 + B1_Mur2 SINE Alu 1 146 -3 4 920 185 267 0 85 chr11 44028523 44028605 -77815251 + MIR SINE MIR 176 250 -12 4 920 438 53 0 0 chr11 44028665 44028722 -77815134 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 920 428 331 279 13 chr11 44028930 44029228 -77814628 + Tigger7 DNA MER2_type 7 383 -2108 4 920 283 176 14 14 chr11 44029270 44029339 -77814517 + Tigger7 DNA MER2_type 2317 2385 -106 4 920 826 242 193 26 chr11 44029342 44029666 -77814190 + MTEb LTR MaLR 1 379 0 4 920 227 236 36 0 chr11 44029809 44029864 -77813992 + MIRm SINE MIR 214 270 -6 4 920 429 208 88 168 chr11 44030440 44030827 -77813029 - RLTR15 LTR ERVK -3 356 1 5 920 237 328 44 22 chr11 44030880 44031017 -77812839 - MIR SINE MIR -51 211 72 5 920 502 236 16 31 chr11 44031164 44031291 -77812565 + RMER20B LTR ERVK 1 125 -502 5 920 1133 168 108 0 chr11 44031852 44032055 -77811801 - URR1B DNA MER1_type 0 225 1 5 920 1379 199 98 28 chr11 44032268 44032594 -77811262 + ORR1E LTR MaLR 5 353 -6 5 920 235 293 138 0 chr11 44032931 44033054 -77810802 - MIR SINE MIR -77 185 46 5 920 528 45 0 0 chr11 44033309 44033376 -77810480 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 920 305 250 34 51 chr11 44033855 44033973 -77809883 + MIR3 SINE MIR 85 200 -8 5 920 226 301 24 0 chr11 44034174 44034257 -77809599 - MIRb SINE MIR -99 169 85 5 920 891 266 32 50 chr11 44034922 44035203 -77808653 + L1MC5 LINE L1 6636 6911 -1050 5 920 800 277 9 19 chr11 44035248 44035458 -77808398 - B3 SINE B2 -7 209 2 6 920 567 218 149 8 chr11 44035533 44035667 -77808189 - B3A SINE B2 -32 166 14 6 920 363 338 50 43 chr11 44035681 44036077 -77807779 + L1MC5 LINE L1 6998 7396 -565 5 920 313 323 153 33 chr11 44036168 44036443 -77807413 + RSINE1 SINE B4 1 282 -10 6 920 440 35 17 0 chr11 44036862 44036920 -77806936 + (TCC)n Simple_repeat Simple_repeat 3 61 0 6 920 576 125 259 0 chr11 44036922 44037034 -77806822 - B1_Mur3 SINE Alu -6 143 3 6 920 272 200 0 14 chr11 44037140 44037211 -77806645 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 920 866 277 136 16 chr11 44037316 44037690 -77806166 - MTD LTR MaLR 0 419 1 6 920 691 254 72 116 chr11 44037764 44038152 -77805704 + MTE2a LTR MaLR 1 371 -8 6 920 599 219 16 0 chr11 44038487 44038610 -77805246 + RSINE1 SINE B4 10 134 -31 6 920 180 77 0 0 chr11 44039553 44039579 -77804277 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 920 240 35 0 0 chr11 44039582 44039611 -77804245 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 7 920 573 42 0 0 chr11 44039744 44039816 -77804040 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 920 659 270 0 0 chr11 44039819 44039971 -77803885 - B3A SINE B2 -46 152 1 7 14 276 275 47 13 chr11 44040163 44040293 -77803563 + MLT1B LTR MaLR 53 188 -367 7 921 794 208 94 31 chr11 44040293 44040516 -77803340 + ORR1E LTR MaLR 1 237 -122 7 921 1340 241 71 14 chr11 44041189 44041539 -77802317 - MTEa LTR MaLR 0 379 10 7 921 210 276 0 0 chr11 44041678 44041736 -77802120 + MER5A DNA MER1_type 1 58 -131 7 921 619 220 7 28 chr11 44042887 44043031 -77800825 - ID_B1 SINE B4 -1 223 87 7 921 517 243 126 0 chr11 44043289 44043453 -77800403 + MLT1B LTR MaLR 203 463 -4 7 921 690 249 183 9 chr11 44043501 44043818 -77800038 + MLT1G1 LTR MaLR 181 552 -27 7 921 261 83 0 0 chr11 44043826 44043862 -77799994 + (T)n Simple_repeat Simple_repeat 1 36 0 7 921 225 233 0 32 chr11 44044213 44044275 -77799581 - MTEb LTR MaLR -23 356 297 8 921 1098 266 93 29 chr11 44044540 44044916 -77798940 - MTD LTR MaLR -14 405 6 8 921 3156 59 5 8 chr11 44044988 44045383 -77798473 - MTA_Mm LTR MaLR 0 396 3 8 921 445 308 41 50 chr11 44045504 44045723 -77798133 - B4A SINE B4 -1 291 75 8 921 310 267 23 0 chr11 44045818 44045904 -77797952 - PB1D10 SINE Alu -29 88 1 8 921 344 296 41 34 chr11 44045954 44046101 -77797755 - B1F SINE Alu 0 149 2 8 921 306 0 0 0 chr11 44046137 44046171 -77797685 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 921 288 254 0 0 chr11 44046853 44046924 -77796932 + RSINE1 SINE B4 85 155 -10 8 921 27 0 0 0 chr11 44047186 44047213 -77796643 + AT_rich Low_complexity Low_complexity 1 27 0 8 921 227 339 55 31 chr11 44047643 44047771 -77796085 - MIRb SINE MIR -34 234 104 8 921 692 228 7 0 chr11 44048139 44048275 -77795581 - RSINE1 SINE B4 -16 149 13 9 921 459 309 51 46 chr11 44048498 44048695 -77795161 - B3 SINE B2 -10 206 9 9 921 200 325 82 13 chr11 44049206 44049365 -77794491 - MIR SINE MIR -30 232 63 9 921 216 97 0 0 chr11 44049521 44049552 -77794304 + (GGA)n Simple_repeat Simple_repeat 2 32 0 9 921 520 73 12 12 chr11 44049547 44049630 -77794226 + (GA)n Simple_repeat Simple_repeat 2 84 0 9 921 1016 251 102 30 chr11 44049721 44050114 -77793742 + L1MA4 LINE L1 5561 5973 -330 9 921 483 307 57 7 chr11 44051044 44051185 -77792671 + RSINE1 SINE B4 14 161 -4 9 921 34 0 0 0 chr11 44051227 44051261 -77792595 + AT_rich Low_complexity Low_complexity 1 34 0 9 921 190 307 38 38 chr11 44051895 44052000 -77791856 - MIRb SINE MIR -130 138 34 9 921 360 43 0 0 chr11 44052074 44052120 -77791736 + (TGGGGG)n Simple_repeat Simple_repeat 2 47 0 9 921 606 93 0 0 chr11 44052495 44052581 -77791275 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 921 412 336 51 28 chr11 44052593 44052810 -77791046 - ID_B1 SINE B4 0 224 3 1 921 423 225 0 0 chr11 44053607 44053687 -77790169 + ID SINE ID 1 80 -144 1 921 907 210 58 34 chr11 44055321 44055528 -77788328 + B3 SINE B2 2 213 -3 1 921 356 56 0 36 chr11 44055852 44055908 -77787948 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 1 921 225 328 30 42 chr11 44056126 44056320 -77787536 + MIRc SINE MIR 26 212 -56 1 921 206 271 0 17 chr11 44057165 44057225 -77786631 + G-rich Low_complexity Low_complexity 2 60 0 1 921 2472 149 26 14 chr11 44058124 44058345 -77785511 - MTC LTR MaLR 0 421 198 1 921 230 0 33 0 chr11 44058345 44058375 -77785481 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 921 2472 149 26 14 chr11 44058375 44058569 -77785287 - MTC LTR MaLR -224 197 2 1 921 515 271 42 21 chr11 44058580 44058723 -77785133 + MTEa LTR MaLR 18 163 -216 1 921 212 193 172 17 chr11 44058726 44058784 -77785072 + RSINE1 SINE B4 29 95 -70 1 921 297 0 0 0 chr11 44058798 44058831 -77785025 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 921 2331 183 65 8 chr11 44058889 44059380 -77784476 + RLTR11A LTR ERVK 10 528 0 1 921 213 269 14 43 chr11 44059514 44059584 -77784272 - MIRb SINE MIR -138 70 3 1 921 25 0 0 0 chr11 44059969 44059994 -77783862 + AT_rich Low_complexity Low_complexity 1 25 0 1 921 805 330 57 17 chr11 44060007 44060411 -77783445 + Lx8 LINE L1 7051 7470 -3 1 921 418 138 125 0 chr11 44060779 44060799 -77783057 + Lx3C LINE L1 6517 6546 -430 1 921 2347 143 7 32 chr11 44060799 44061203 -77782653 - Lx2B LINE L1 -1 6999 6606 1 921 418 138 125 0 chr11 44061203 44061262 -77782594 + Lx3C LINE L1 6547 6605 -371 1 921 562 268 100 12 chr11 44062093 44062263 -77781593 - B4A SINE B4 -82 210 26 1 921 225 292 0 27 chr11 44062208 44062282 -77781574 - B3A SINE B2 -119 79 8 1 921 385 265 47 27 chr11 44062500 44062649 -77781207 + MIR SINE MIR 106 260 -8 1 921 387 261 22 0 chr11 44062921 44063013 -77780843 - ID_B1 SINE B4 -16 208 115 1 921 685 256 47 53 chr11 44063094 44063284 -77780572 - B3A SINE B2 0 198 10 1 921 233 235 0 0 chr11 44063925 44063976 -77779880 - L2c LINE L2 -3 3384 3334 1 921 314 271 77 24 chr11 44063943 44064111 -77779745 - MIR SINE MIR -15 247 75 1 921 518 276 28 0 chr11 44064278 44064423 -77779433 - RMER15 LTR ERVL -23 552 404 1 921 503 235 69 63 chr11 44064481 44064640 -77779216 - RMER15 LTR ERVL -415 160 1 1 921 256 338 6 96 chr11 44065679 44065846 -77778010 - CYRA11_Mm Unknown Y-chromosome -217 400 249 1 921 896 179 116 10 chr11 44065697 44065895 -77777961 + URR1A DNA MER1_type 5 223 -3 1 921 237 235 0 19 chr11 44066402 44066454 -77777402 + CT-rich Low_complexity Low_complexity 3 53 0 1 921 283 248 75 47 chr11 44066541 44066647 -77777209 + MLT1A1 LTR MaLR 297 405 -3 1 921 28 0 0 0 chr11 44066731 44066759 -77777097 + AT_rich Low_complexity Low_complexity 1 28 0 1 921 532 333 34 17 chr11 44066852 44067087 -77776769 - Lx8 LINE L1 -312 7161 6923 1 921 394 270 0 20 chr11 44067431 44067533 -77776323 + PB1D10 SINE Alu 10 109 -8 1 921 648 0 0 0 chr11 44067601 44067673 -77776183 + (GGGAA)n Simple_repeat Simple_repeat 2 73 0 1 921 199 311 16 0 chr11 44067882 44067943 -77775913 - MIRc SINE MIR -135 133 72 1 921 307 330 19 0 chr11 44068670 44068773 -77775083 + MIRb SINE MIR 90 194 -74 1 921 622 254 19 81 chr11 44068775 44068985 -77774871 + B4A SINE B4 3 199 -93 1 921 402 86 0 0 chr11 44068985 44069043 -77774813 + L1_Mus3 LINE L1 6246 6303 -335 1 921 258 32 0 0 chr11 44069111 44069142 -77774714 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 921 484 315 177 11 chr11 44069173 44069552 -77774304 + Lx8 LINE L1 2917 3358 -2522 1 921 255 296 20 0 chr11 44069595 44069693 -77774163 + RLTR19C LTR ERVK 26 125 -381 1 921 22 0 0 0 chr11 44069885 44069907 -77773949 + AT_rich Low_complexity Low_complexity 1 22 0 1 921 4781 293 95 21 chr11 44070300 44071554 -77772302 + Lx8 LINE L1 3396 4720 -1160 1 921 423 0 0 0 chr11 44071554 44071601 -77772255 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 921 4781 301 94 26 chr11 44071601 44073381 -77770475 + Lx8 LINE L1 4721 6618 -855 1 921 1189 186 9 5 chr11 44073514 44073730 -77770126 + URR1B DNA MER1_type 1 217 -8 1 921 456 280 54 62 chr11 44073516 44073756 -77770100 - CYRA11_Mm Unknown Y-chromosome -233 384 147 1 921 287 312 0 40 chr11 44073760 44073860 -77769996 + Lx8 LINE L1 6854 6949 -524 1 921 1137 256 25 65 chr11 44073880 44074248 -77769608 - MTE2a LTR MaLR -21 358 6 1 921 455 359 97 40 chr11 44074253 44074750 -77769106 + Lx8 LINE L1 6948 7472 -1 1 921 186 167 0 0 chr11 44074828 44074864 -77768992 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 921 422 229 110 0 chr11 44075069 44075178 -77768678 + ID_B1 SINE B4 99 219 -5 1 921 1579 252 16 60 chr11 44076169 44076654 -77767202 - MLT2C2 LTR ERVL 0 464 1 1 921 276 353 137 0 chr11 44077342 44077444 -77766412 + B1_Mus2 SINE Alu 15 130 -17 1 921 364 270 11 0 chr11 44077465 44077554 -77766302 + B1F1 SINE Alu 7 96 -53 1 921 186 71 0 0 chr11 44077621 44077649 -77766207 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 1 921 396 0 0 0 chr11 44077656 44077700 -77766156 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 921 324 0 0 0 chr11 44077700 44077735 -77766121 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 921 835 240 116 19 chr11 44077921 44078180 -77765676 + B4A SINE B4 8 291 -1 1 921 321 305 91 35 chr11 44078327 44078524 -77765332 + MARNA DNA Mariner 292 499 -87 1 921 317 309 0 35 chr11 44078801 44078915 -77764941 + PB1D10 SINE Alu 2 111 -6 1 921 1074 24 0 0 chr11 44079569 44079694 -77764162 - L1Md_F2 LINE L1 -526 6056 5932 1 921 3188 44 3 0 chr11 44079694 44080080 -77763776 + L1Md_F2 LINE L1 6196 6582 0 1 921 846 227 14 31 chr11 44080108 44080331 -77763525 + B4 SINE B4 1 219 -73 1 921 917 13 25 38 chr11 44080415 44080572 -77763284 + (GAGAA)n Simple_repeat Simple_repeat 5 159 0 1 921 419 255 71 0 chr11 44081051 44081149 -77762707 + MTD LTR MaLR 298 402 -17 1 921 258 323 21 0 chr11 44081572 44081665 -77762191 + RSINE1 SINE B4 2 96 -69 1 921 213 39 0 0 chr11 44081665 44081691 -77762165 + (GGAGA)n Simple_repeat Simple_repeat 1 26 0 1 921 288 192 303 0 chr11 44081708 44081807 -77762049 + B1F2 SINE Alu 1 129 -20 1 921 468 288 99 28 chr11 44082054 44082236 -77761620 - MIRb SINE MIR -23 245 51 1 921 544 266 14 14 chr11 44082418 44082559 -77761297 + RSINE1 SINE B4 13 153 -12 1 921 420 20 0 0 chr11 44082567 44082616 -77761240 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 921 603 0 0 0 chr11 44082616 44082683 -77761173 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 1 921 341 298 78 13 chr11 44082802 44082955 -77760901 - MER117 DNA MER1_type -9 188 26 1 921 763 291 61 23 chr11 44083160 44083470 -77760386 + RMER15 LTR ERVL 215 536 -39 1 921 648 38 0 0 chr11 44083473 44083552 -77760304 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 921 668 311 22 36 chr11 44083824 44084101 -77759755 - RLTR14-int LTR ERV1 -151 5166 4894 1 921 285 298 12 0 chr11 44085392 44085476 -77758380 - RLTR14-int LTR ERV1 -2303 3014 2930 1 921 449 302 57 43 chr11 44085728 44086053 -77757803 - RLTR14-int LTR ERV1 -2621 2696 2418 1 921 476 293 134 44 chr11 44086523 44086907 -77756949 - MuRRS-int LTR ERV1 -4516 3262 2540 1 921 307 354 109 38 chr11 44087644 44087964 -77755892 + MER115 DNA Tip100 339 681 -12 1 921 242 246 13 40 chr11 44088211 44088287 -77755569 + MIRc SINE MIR 192 265 -3 1 921 8052 57 4 6 chr11 44088309 44089403 -77754453 - L1_Mus2 LINE L1 0 6566 5476 1 921 1522 252 116 30 chr11 44089815 44090343 -77753513 + Lx7 LINE L1 6739 7330 -143 1 921 261 0 0 0 chr11 44090343 44090372 -77753484 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 921 1225 282 152 28 chr11 44090372 44090489 -77753367 + Lx7 LINE L1 7331 7470 -3 1 921 189 333 43 0 chr11 44090751 44090820 -77753036 - L2a LINE L2 -49 3377 3306 1 921 471 35 0 0 chr11 44090892 44090949 -77752907 + (CCA)n Simple_repeat Simple_repeat 1 57 0 1 921 722 162 7 0 chr11 44091719 44091855 -77752001 + (CATA)n Simple_repeat Simple_repeat 2 138 0 1 921 189 0 0 0 chr11 44091859 44091880 -77751976 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 921 280 111 0 22 chr11 44091882 44091928 -77751928 - B2_Mm2 SINE B2 -31 164 120 1 921 729 0 0 0 chr11 44093013 44093094 -77750762 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 1 921 906 169 0 0 chr11 44093094 44093260 -77750596 + GA-rich Low_complexity Low_complexity 1 166 0 1 921 218 262 11 22 chr11 44093338 44093430 -77750426 - MIR SINE MIR -139 129 40 1 921 873 289 58 20 chr11 44093445 44093787 -77750069 + ORR1E LTR MaLR 5 359 0 1 921 366 293 52 109 chr11 44094015 44094245 -77749611 - Lx8 LINE L1 -9 7464 7248 1 921 523 322 124 10 chr11 44094270 44094471 -77749385 - B4A SINE B4 -62 230 7 1 921 276 317 43 78 chr11 44094499 44094649 -77749207 - L1MC2 LINE L1 -27 6317 6179 1 921 480 299 34 13 chr11 44094649 44094798 -77749058 - RSINE1 SINE B4 -9 156 5 1 921 276 317 43 78 chr11 44094798 44094928 -77748928 - L1MC2 LINE L1 -166 6178 6047 1 921 299 291 25 0 chr11 44094942 44095021 -77748835 + ID4 SINE ID 1 81 -2 1 921 866 250 51 0 chr11 44095137 44095333 -77748523 - B3 SINE B2 0 216 11 1 921 189 258 152 0 chr11 44096849 44096915 -77746941 + L2c LINE L2 3130 3205 -182 1 921 496 233 115 83 chr11 44098472 44098664 -77745192 - B3A SINE B2 0 198 1 1 921 548 279 12 24 chr11 44099326 44099491 -77744365 + ID_B1 SINE B4 61 223 -1 1 921 386 295 169 12 chr11 44100326 44100575 -77743281 + MLT2B2 LTR ERVL 2 289 -231 1 921 303 291 0 28 chr11 44100747 44100853 -77743003 - Charlie13b DNA Charlie -215 297 195 1 921 414 0 0 0 chr11 44101152 44101198 -77742658 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 921 1998 119 58 18 chr11 44102621 44102963 -77740893 + ORR1B2 LTR MaLR 12 367 0 2 921 180 0 0 0 chr11 44103689 44103709 -77740147 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 921 262 291 56 46 chr11 44104664 44104772 -77739084 - MER87 LTR ERV1 -80 461 353 2 921 519 186 0 0 chr11 44105985 44106250 -77737606 + (TCTCTG)n Simple_repeat Simple_repeat 1 265 0 2 921 541 182 1 14 chr11 44106295 44107198 -77736658 + (TG)n Simple_repeat Simple_repeat 1 891 0 2 921 435 287 27 40 chr11 44107409 44107558 -77736298 - B1F1 SINE Alu -2 147 1 2 921 220 140 0 23 chr11 44107846 44107890 -77735966 + A-rich Low_complexity Low_complexity 6 48 0 2 921 935 251 106 23 chr11 44107935 44108268 -77735588 - MTD LTR MaLR -14 405 49 2 921 279 0 0 0 chr11 44108291 44108322 -77735534 + (A)n Simple_repeat Simple_repeat 1 31 0 2 921 742 306 88 40 chr11 44108693 44109214 -77734642 + L1M2 LINE L1 5257 5802 -510 2 921 237 283 196 42 chr11 44109530 44109744 -77734112 - HAL1 LINE L1 -1882 625 379 2 921 231 333 111 50 chr11 44109763 44109962 -77733894 + ORR1E LTR MaLR 44 254 -105 2 921 1027 185 34 10 chr11 44110280 44110487 -77733369 - URR1A DNA MER1_type 0 226 15 2 921 658 303 22 27 chr11 44110598 44110822 -77733034 - ID_B1 SINE B4 0 224 2 2 921 180 0 0 0 chr11 44111236 44111256 -77732600 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 2 921 1139 240 129 14 chr11 44112643 44113006 -77730850 - MTD LTR MaLR -14 405 1 2 921 203 159 0 43 chr11 44113378 44113424 -77730432 - MER91C DNA Tip100 -96 44 1 2 921 276 280 9 53 chr11 44113748 44113861 -77729995 - MIRb SINE MIR -28 240 133 2 921 591 275 81 29 chr11 44113957 44114129 -77729727 + B3A SINE B2 1 181 -17 2 921 200 316 142 25 chr11 44114548 44114668 -77729188 + MIR SINE MIR 35 168 -94 2 921 449 276 20 50 chr11 44115644 44115803 -77728053 - ID_B1 SINE B4 -6 218 69 2 921 225 313 36 0 chr11 44115815 44115898 -77727958 + MIRb SINE MIR 115 200 -68 2 921 380 264 147 66 chr11 44116316 44116575 -77727281 + B4 SINE B4 2 281 -11 2 921 252 143 0 0 chr11 44116604 44116646 -77727210 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 921 813 317 88 11 chr11 44116777 44117128 -77726728 - L1MC1 LINE L1 -15 6318 5941 2 921 468 0 0 0 chr11 44117849 44117901 -77725955 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 921 221 57 0 28 chr11 44118455 44118491 -77725365 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 921 36258 46 0 3 chr11 44119580 44125030 -77718826 + L1Md_T LINE L1 63 5589 -297 2 921 8547 38 0 0 chr11 44125030 44126026 -77717830 + L1Md_T LINE L1 5590 6585 0 2 921 241 298 0 0 chr11 44126200 44126257 -77717599 + ID4 SINE ID 5 61 -22 2 921 2277 196 147 0 chr11 44126650 44127404 -77716452 + Lx9 LINE L1 6594 7458 -186 2 921 204 67 0 0 chr11 44127696 44127726 -77716130 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 921 270 271 8 151 chr11 44128344 44128470 -77715386 + MTEb LTR MaLR 1 108 -271 2 921 1053 262 162 12 chr11 44128474 44128795 -77715061 + MTD LTR MaLR 5 373 -46 2 921 743 83 9 0 chr11 44128811 44128919 -77714937 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 2 921 2806 188 58 16 chr11 44128919 44129471 -77714385 + Lx5 LINE L1 6371 6945 -105 2 921 493 258 35 23 chr11 44129471 44129642 -77714214 + MTEb LTR MaLR 168 340 -39 2 921 558 0 0 0 chr11 44130190 44130252 -77713604 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 2 921 566 307 83 40 chr11 44130273 44130551 -77713305 + B4A SINE B4 1 290 -2 2 921 237 65 0 0 chr11 44130592 44130623 -77713233 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 921 380 276 112 0 chr11 44131257 44131373 -77712483 - MIR SINE MIR -103 159 31 2 921 335 60 0 20 chr11 44131528 44131579 -77712277 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 2 921 473 266 16 24 chr11 44131586 44131713 -77712143 - B1F SINE Alu -8 141 16 2 921 742 270 5 10 chr11 44132283 44132481 -77711375 + ORR1E LTR MaLR 1 197 -162 2 921 324 260 9 46 chr11 44132496 44132605 -77711251 + ORR1E LTR MaLR 265 369 -10 2 921 903 258 14 19 chr11 44133685 44133898 -77709958 + ID_B1 SINE B4 2 213 -11 2 921 699 24 0 0 chr11 44133901 44133986 -77709870 + (GA)n Simple_repeat Simple_repeat 2 86 0 2 921 882 29 0 0 chr11 44133987 44134092 -77709764 + (GAA)n Simple_repeat Simple_repeat 2 106 0 2 921 794 213 53 27 chr11 44134458 44134646 -77709210 - B3A SINE B2 -2 196 4 2 921 850 289 78 59 chr11 44135830 44136103 -77707753 - MTE2a LTR MaLR 0 379 91 2 921 477 47 0 0 chr11 44136103 44136167 -77707689 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 921 850 289 78 59 chr11 44136167 44136265 -77707591 - MTE2a LTR MaLR -289 90 1 2 921 2130 110 0 0 chr11 44136366 44136685 -77707171 - ORR1A2 LTR MaLR -8 319 1 2 921 307 265 48 10 chr11 44137001 44137104 -77706752 + L3 LINE CR1 3810 3916 -573 2 921 199 277 101 50 chr11 44137383 44137482 -77706374 - MIRm SINE MIR -100 176 73 2 921 783 315 133 8 chr11 44137594 44137862 -77705994 + Lx8 LINE L1 7057 7330 -143 2 921 306 0 0 0 chr11 44137862 44137896 -77705960 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2 921 783 315 133 8 chr11 44137896 44137995 -77705861 + Lx8 LINE L1 7331 7469 -4 2 921 429 341 49 22 chr11 44138347 44138530 -77705326 - MLT1G1 LTR MaLR -387 192 5 2 921 226 320 0 0 chr11 44138928 44139003 -77704853 + MIRb SINE MIR 186 260 -8 2 921 418 331 48 0 chr11 44139982 44140127 -77703729 + MLT1B LTR MaLR 4 155 -235 2 921 612 0 0 0 chr11 44140133 44140201 -77703655 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 921 1277 257 42 18 chr11 44140527 44140864 -77702992 + ORR1D2 LTR MaLR 14 358 -12 2 921 355 53 72 31 chr11 44141109 44141206 -77702650 + T-rich Low_complexity Low_complexity 4 104 0 2 921 230 167 0 0 chr11 44141207 44141249 -77702607 - ID_B1 SINE B4 -2 222 181 2 921 291 333 0 0 chr11 44141253 44141343 -77702513 - 5S rRNA rRNA -31 90 1 2 921 754 207 79 6 chr11 44141361 44141526 -77702330 - ID_B1 SINE B4 -46 178 2 2 921 306 0 0 0 chr11 44142359 44142393 -77701463 + (ATTG)n Simple_repeat Simple_repeat 3 36 0 2 921 210 270 0 0 chr11 44143324 44143387 -77700469 + GA-rich Low_complexity Low_complexity 3 65 0 2 921 246 320 107 11 chr11 44143964 44144141 -77699715 + MIRb SINE MIR 42 235 -33 2 921 366 183 0 0 chr11 44145242 44145313 -77698543 + T-rich Low_complexity Low_complexity 1 71 0 2 921 257 368 0 0 chr11 44145584 44145690 -77698166 + MIRb SINE MIR 52 157 -111 2 921 262 269 12 24 chr11 44146046 44146210 -77697646 + GA-rich Low_complexity Low_complexity 1 162 0 2 921 207 274 20 0 chr11 44146233 44146284 -77697572 + GA-rich Low_complexity Low_complexity 6 57 0 2 921 320 265 0 0 chr11 44146285 44146353 -77697503 + ID2 SINE ID 2 69 -14 2 921 221 383 21 0 chr11 44146390 44146484 -77697372 - MER5B DNA MER1_type -80 98 3 2 921 22 0 0 0 chr11 44148623 44148645 -77695211 + AT_rich Low_complexity Low_complexity 1 22 0 2 921 547 286 6 30 chr11 44148991 44149157 -77694699 + Lx8 LINE L1 6308 6469 -1004 2 921 596 239 23 91 chr11 44149174 44149349 -77694507 + RSINE1 SINE B4 3 165 0 2 921 1317 232 82 30 chr11 44149352 44149485 -77694371 + Lx9 LINE L1 7063 7202 -442 2 921 228 100 0 0 chr11 44149485 44149525 -77694331 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 921 1317 232 82 30 chr11 44149525 44149755 -77694101 + Lx9 LINE L1 7203 7444 -200 2 921 273 57 0 0 chr11 44149764 44149799 -77694057 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 921 383 118 41 41 chr11 44149807 44149904 -77693952 + Lx9 LINE L1 7542 7638 -6 2 921 8934 110 22 13 chr11 44150327 44151671 -77692185 - Lx2 LINE L1 0 6997 5642 2 921 7152 147 14 3 chr11 44151664 44152834 -77691022 + Lx2 LINE L1 4487 5670 -213 2 921 290 231 59 119 chr11 44153022 44153140 -77690716 - MLT1B LTR MaLR -67 323 213 2 921 232 200 15 15 chr11 44153144 44153210 -77690646 + CT-rich Low_complexity Low_complexity 4 69 0 2 921 226 284 78 72 chr11 44153486 44153653 -77690203 + L1MA4 LINE L1 5840 6007 -293 2 921 713 242 44 15 chr11 44153788 44153993 -77689863 + B3 SINE B2 3 213 -3 2 921 362 271 9 9 chr11 44154736 44154844 -77689012 + RMER5 LTR ERV1 225 332 -202 2 921 464 232 97 1 chr11 44155065 44155209 -77688647 - MLT1A1 LTR MaLR -4 404 204 2 921 232 277 29 65 chr11 44156243 44156382 -77687474 + RLTR41 LTR ERV1 251 384 -62 2 921 1089 90 0 0 chr11 44156860 44157037 -77686819 + (TC)n Simple_repeat Simple_repeat 2 178 0 2 921 1665 147 98 3 chr11 44157198 44157526 -77686330 + RLTR15 LTR ERVK 1 359 0 2 921 553 308 39 0 chr11 44157817 44157973 -77685883 + RSINE1 SINE B4 3 164 -1 2 921 657 69 0 0 chr11 44157973 44158060 -77685796 + (TAAAA)n Simple_repeat Simple_repeat 4 90 0 2 921 286 247 82 0 chr11 44158577 44158650 -77685206 + B1F SINE Alu 18 96 -53 2 921 259 321 12 0 chr11 44158651 44158732 -77685124 + GA-rich Low_complexity Low_complexity 1 82 0 2 921 381 95 0 0 chr11 44158753 44158816 -77685040 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 2 921 317 278 50 43 chr11 44158847 44158986 -77684870 + RSINE1 SINE B4 3 142 -23 2 921 468 0 0 0 chr11 44158989 44159041 -77684815 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 921 22 35 0 0 chr11 44159043 44159072 -77684784 + AT_rich Low_complexity Low_complexity 1 29 0 2 921 27 29 0 0 chr11 44160213 44160247 -77683609 + AT_rich Low_complexity Low_complexity 1 34 0 2 921 265 317 40 58 chr11 44160422 44160596 -77683260 + ORR1E LTR MaLR 77 247 -112 2 921 27 49 0 0 chr11 44160742 44160783 -77683073 + AT_rich Low_complexity Low_complexity 1 41 0 2 921 248 101 55 22 chr11 44160854 44160945 -77682911 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 921 218 173 39 0 chr11 44161228 44161280 -77682576 + (CAGA)n Simple_repeat Simple_repeat 4 57 0 2 921 323 159 0 28 chr11 44161280 44161351 -77682505 + GA-rich Low_complexity Low_complexity 4 72 0 2 921 252 192 50 0 chr11 44161387 44161507 -77682349 + (CAGA)n Simple_repeat Simple_repeat 1 126 0 3 921 268 330 22 0 chr11 44161514 44161605 -77682251 + GA-rich Low_complexity Low_complexity 3 95 0 3 921 214 274 32 0 chr11 44161729 44161791 -77682065 + MIRb SINE MIR 38 101 -167 3 921 741 53 0 0 chr11 44162241 44162335 -77681521 + (TC)n Simple_repeat Simple_repeat 1 94 0 3 921 225 0 0 0 chr11 44162337 44162362 -77681494 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 921 214 205 0 0 chr11 44163442 44163481 -77680375 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 921 255 297 26 26 chr11 44163528 44163642 -77680214 - PB1D10 SINE Alu -3 114 1 3 921 246 327 78 66 chr11 44163801 44164043 -77679813 - ORR1D2 LTR MaLR -17 353 109 3 921 305 173 0 118 chr11 44164199 44164284 -77679572 + MER58A DNA MER1_type 9 83 -141 3 921 256 189 13 26 chr11 44164391 44164467 -77679389 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 921 333 68 0 0 chr11 44164467 44164511 -77679345 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 921 319 323 172 15 chr11 44165005 44165272 -77678584 - L1MC LINE L1 -2076 5806 5498 3 921 334 206 19 10 chr11 44165780 44165883 -77677973 + (TATG)n Simple_repeat Simple_repeat 1 104 0 3 921 253 159 0 0 chr11 44165883 44165927 -77677929 + MER4B-int LTR ERV1 1150 1193 -5565 3 921 357 234 14 14 chr11 44165927 44166070 -77677786 + GA-rich Low_complexity Low_complexity 2 144 0 3 921 212 341 82 0 chr11 44166287 44166422 -77677434 + MIRb SINE MIR 4 149 -119 3 921 203 147 0 0 chr11 44167118 44167152 -77676704 + (GTTTG)n Simple_repeat Simple_repeat 5 38 0 3 921 204 108 50 61 chr11 44167160 44167259 -77676597 + (TTTG)n Simple_repeat Simple_repeat 2 99 0 3 921 511 307 7 0 chr11 44167265 44167405 -77676451 - ID_B1 SINE B4 0 224 84 3 921 277 253 34 22 chr11 44167610 44167699 -77676157 - MTEa LTR MaLR -3 376 287 3 921 350 74 0 18 chr11 44167907 44167962 -77675894 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 3 921 366 319 89 14 chr11 44168039 44168185 -77675671 - B4 SINE B4 -11 281 125 3 921 268 342 81 20 chr11 44168794 44168943 -77674913 + MLT1E2 LTR MaLR 31 188 -439 3 921 41 48 0 0 chr11 44169039 44169101 -77674755 + AT_rich Low_complexity Low_complexity 1 62 0 3 921 425 249 62 142 chr11 44169113 44169324 -77674532 + B4A SINE B4 99 292 0 3 921 405 76 108 6 chr11 44169333 44169491 -77674365 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 921 555 66 0 0 chr11 44169569 44169645 -77674211 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 921 507 252 350 31 chr11 44169763 44170052 -77673804 - L1MB2 LINE L1 -1 6170 5790 3 921 822 215 21 10 chr11 44170053 44170246 -77673610 - MTD LTR MaLR -8 411 217 3 921 441 263 175 0 chr11 44170688 44170825 -77673031 + RSINE1 SINE B4 2 162 -3 3 921 495 0 0 0 chr11 44170826 44170881 -77672975 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 921 358 265 8 17 chr11 44171083 44171202 -77672654 + PB1D7 SINE Alu 2 119 -1 3 922 261 0 0 0 chr11 44171363 44171392 -77672464 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 922 240 335 78 18 chr11 44171396 44171615 -77672241 + L1ME2z LINE L1 6199 6430 -14 3 922 185 246 16 0 chr11 44172359 44172420 -77671436 - MIR SINE MIR -86 122 61 3 922 7775 47 1 0 chr11 44173061 44173986 -77669870 - L1Md_F2 LINE L1 -11 6571 5646 3 922 8870 64 0 0 chr11 44173986 44175085 -77668771 + L1Md_F2 LINE L1 4549 5647 -236 3 922 386 53 18 0 chr11 44175416 44175473 -77668383 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 3 922 998 64 0 25 chr11 44175533 44175693 -77668163 + (TTC)n Simple_repeat Simple_repeat 3 158 0 3 922 3784 210 93 73 chr11 44175708 44176378 -77667478 - RMER12 LTR ERVK -59 1789 603 3 922 1220 54 0 0 chr11 44176378 44176525 -77667331 + B1_Mus2 SINE Alu 1 147 0 3 922 3784 207 70 78 chr11 44176525 44177135 -77666721 - RMER12 LTR ERVK -720 602 1 3 922 294 282 28 39 chr11 44177256 44177370 -77666486 - MIR SINE MIR -59 209 86 3 922 1118 238 64 118 chr11 44178911 44178932 -77664924 + ORR1D2 LTR MaLR 1 31 -339 3 922 441 0 0 0 chr11 44178932 44178981 -77664875 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 922 1118 238 64 118 chr11 44178981 44179350 -77664506 + ORR1D2 LTR MaLR 32 369 -1 3 922 507 274 54 65 chr11 44180092 44180260 -77663596 - B3A SINE B2 -5 193 28 3 922 1218 52 0 0 chr11 44181008 44181162 -77662694 + (TC)n Simple_repeat Simple_repeat 1 154 0 3 922 267 136 0 0 chr11 44181927 44181986 -77661870 + (T)n Simple_repeat Simple_repeat 1 59 0 3 922 257 325 85 31 chr11 44182323 44182453 -77661403 - MLT1A LTR MaLR -4 404 268 3 922 278 250 9 111 chr11 44182620 44182728 -77661128 - MLT1A LTR MaLR -311 97 1 3 922 1536 132 8 0 chr11 44183234 44183477 -77660379 + MTC LTR MaLR 1 245 -176 3 922 2877 77 14 23 chr11 44183475 44183912 -77659944 - MT2C_Mm LTR ERVL -8 467 35 3 922 782 177 0 7 chr11 44183885 44184027 -77659829 + MTC LTR MaLR 254 394 -27 3 922 386 328 55 0 chr11 44184250 44184378 -77659478 + Tigger7 DNA MER2_type 2356 2490 -1 3 922 780 83 0 0 chr11 44184554 44184663 -77659193 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 3 922 315 0 0 0 chr11 44184854 44184889 -77658967 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 922 823 244 162 42 chr11 44184914 44185308 -77658548 + Lx8 LINE L1 6707 7147 -326 3 922 262 228 81 81 chr11 44185306 44185478 -77658378 + Lx8 LINE L1 7301 7472 -1 3 922 568 255 20 20 chr11 44185497 44185645 -77658211 - B1_Mur1 SINE Alu 0 149 2 3 922 568 250 29 14 chr11 44186820 44186958 -77656898 + B3 SINE B2 35 174 -42 3 922 285 314 55 67 chr11 44187004 44187272 -77656584 + RSINE1 SINE B4 1 261 -31 3 922 312 27 0 0 chr11 44187275 44187312 -77656544 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 922 1148 256 85 20 chr11 44188048 44188402 -77655454 - MTEb LTR MaLR -2 377 1 3 922 1378 73 39 0 chr11 44188598 44188777 -77655079 - B2_Mm2 SINE B2 -8 187 2 3 922 959 147 6 0 chr11 44188990 44189160 -77654696 + URR1A DNA MER1_type 55 225 -1 3 922 333 0 0 0 chr11 44190557 44190594 -77653262 + (TATG)n Simple_repeat Simple_repeat 4 40 0 3 922 536 152 10 0 chr11 44190632 44190731 -77653125 + (TTTA)n Simple_repeat Simple_repeat 2 101 0 3 922 608 237 43 14 chr11 44190752 44190893 -77652963 - RSINE1 SINE B4 -19 146 2 3 922 829 235 16 28 chr11 44192018 44192231 -77651625 + ID_B1 SINE B4 11 222 -2 3 922 180 0 0 0 chr11 44192231 44192251 -77651605 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 922 656 340 12 12 chr11 44192447 44192706 -77651150 + B4A SINE B4 15 273 -19 3 922 327 85 0 0 chr11 44192748 44192795 -77651061 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 922 2690 299 84 41 chr11 44192826 44193833 -77650023 + Lx8 LINE L1 5273 6364 -1109 3 922 258 95 0 0 chr11 44193833 44193875 -77649981 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3 922 2690 298 90 38 chr11 44193875 44194454 -77649402 + Lx8 LINE L1 6365 6963 -510 3 922 1836 259 33 67 chr11 44194466 44195104 -77648752 - RLTR18 LTR ERVK 0 616 1 3 922 397 182 100 30 chr11 44195106 44195238 -77648618 - MLT2B4 LTR ERVL -41 521 397 3 922 414 255 37 9 chr11 44195499 44195606 -77648250 + B1F SINE Alu 14 123 -26 3 922 198 0 0 0 chr11 44196224 44196246 -77647610 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 922 190 214 0 51 chr11 44196999 44197058 -77646798 - MIR SINE MIR -115 147 92 3 922 911 151 0 0 chr11 44197538 44197677 -77646179 + L1VL2 LINE L1 271 409 -5926 3 922 2431 107 81 46 chr11 44197809 44198268 -77645588 + IAPLTR2_Mm LTR ERVK 1 475 0 3 922 1021 113 20 69 chr11 44198270 44198491 -77645365 + IAPEz-int LTR ERVK 3 200 -1787 3 922 226 327 0 0 chr11 44198491 44198546 -77645310 + RLTR27 LTR ERVK 221 275 -34 3 922 3870 67 2 18 chr11 44198546 44199049 -77644807 + IAPEz-int LTR ERVK 168 662 -5819 3 922 2201 75 0 0 chr11 44199049 44199327 -77644529 + IAPEz-int LTR ERVK 1359 1636 -4845 3 922 6175 41 5 12 chr11 44199326 44200075 -77643781 + IAPEz-int LTR ERVK 5736 6479 -2 3 922 2458 105 81 46 chr11 44200077 44200536 -77643320 + IAPLTR2_Mm LTR ERVK 1 475 0 3 922 10551 75 26 16 chr11 44200775 44202773 -77641083 + L1VL2 LINE L1 417 2441 -1174 3 922 349 263 74 73 chr11 44204179 44204332 -77639524 + B4 SINE B4 2 149 -75 3 922 249 33 0 0 chr11 44204382 44204412 -77639444 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 922 234 98 24 0 chr11 44204414 44204455 -77639401 - B1_Mus2 SINE Alu 0 147 106 3 922 181 213 0 51 chr11 44204458 44204537 -77639319 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 3 922 184 254 56 56 chr11 44204612 44204737 -77639119 + L2a LINE L2 2939 3068 -358 3 922 343 252 87 108 chr11 44204919 44205150 -77638706 - MER2 DNA MER2_type -52 293 68 3 922 394 266 66 119 chr11 44205350 44205653 -77638203 + RMER10A LTR ERVL 12 298 -144 3 922 297 221 32 164 chr11 44205648 44205837 -77638019 + RMER10A LTR ERVL 260 423 -19 3 922 296 268 20 49 chr11 44205856 44205958 -77637898 + BC1_Mm scRNA scRNA 2 100 -52 3 922 192 380 24 63 chr11 44206864 44207069 -77636787 + MIRb SINE MIR 64 260 -8 3 922 357 176 14 0 chr11 44207398 44207472 -77636384 + PB1D10 SINE Alu 42 116 -1 3 922 407 255 47 8 chr11 44208201 44208330 -77635526 + B1F SINE Alu 11 144 -5 3 922 1175 68 0 0 chr11 44208352 44208499 -77635357 + B1_Mus2 SINE Alu 1 147 0 3 922 243 88 0 0 chr11 44208503 44208537 -77635319 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 3 922 192 97 0 0 chr11 44208603 44208634 -77635222 + (ATG)n Simple_repeat Simple_repeat 2 32 0 3 922 256 291 58 0 chr11 44209798 44209884 -77633972 + B4A SINE B4 106 196 -96 3 922 485 291 23 97 chr11 44209900 44210075 -77633781 + RSINE1 SINE B4 3 164 -1 3 922 1181 75 0 0 chr11 44210223 44210370 -77633486 + B1_Mm SINE Alu 1 147 0 3 922 213 39 0 0 chr11 44210370 44210396 -77633460 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 3 922 222 174 0 0 chr11 44210930 44210976 -77632880 + CT-rich Low_complexity Low_complexity 4 49 0 3 922 270 56 0 0 chr11 44210995 44211031 -77632825 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 922 355 326 0 10 chr11 44213830 44213929 -77629927 + ID_B1 SINE B4 85 182 -42 3 922 307 321 18 62 chr11 44213929 44213943 -77629913 + PB1D10 SINE Alu 4 111 -6 3 922 233 247 119 119 chr11 44214804 44214905 -77628951 - MIRb SINE MIR -149 127 25 4 922 243 0 0 0 chr11 44215152 44215179 -77628677 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 922 341 299 102 5 chr11 44215762 44215897 -77627959 - MIRb SINE MIR -101 175 31 4 922 186 277 130 60 chr11 44216470 44216570 -77627286 + MER5A DNA MER1_type 83 189 0 4 922 758 160 69 0 chr11 44216944 44217075 -77626781 + B1_Mur2 SINE Alu 5 144 -5 4 922 469 270 31 8 chr11 44217101 44217228 -77626628 + RSINE1 SINE B4 7 136 -29 4 922 243 258 0 43 chr11 44217463 44217532 -77626324 + C-rich Low_complexity Low_complexity 2 67 0 4 922 1029 128 0 7 chr11 44218131 44218280 -77625576 - B1_Mus1 SINE Alu 0 148 1 4 922 408 240 130 49 chr11 44218634 44218796 -77625060 - MIRb SINE MIR -68 200 26 4 922 489 328 0 0 chr11 44218986 44219114 -77624742 + RSINE1 SINE B4 22 149 -16 4 922 234 0 0 0 chr11 44219114 44219140 -77624716 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 922 343 310 10 10 chr11 44219830 44219931 -77623925 + B1F SINE Alu 5 105 -44 4 922 255 125 0 0 chr11 44220610 44220650 -77623206 + (ATG)n Simple_repeat Simple_repeat 2 41 0 4 922 259 314 81 30 chr11 44220690 44220898 -77622958 - MIR SINE MIR -45 223 2 4 922 414 0 0 0 chr11 44220966 44221012 -77622844 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 922 307 353 46 0 chr11 44221640 44221793 -77622063 - B4 SINE B4 0 292 133 4 922 225 184 0 0 chr11 44221855 44221904 -77621952 + A-rich Low_complexity Low_complexity 1 49 0 4 922 202 316 152 14 chr11 44223936 44224074 -77619782 - MIRb SINE MIR -64 204 48 4 922 301 276 70 38 chr11 44224698 44224856 -77619000 - MIRb SINE MIR -38 230 68 4 922 205 383 55 6 chr11 44225383 44225564 -77618292 - MIRb SINE MIR -23 245 56 4 922 483 18 0 0 chr11 44225860 44225916 -77617940 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 922 234 311 56 19 chr11 44226270 44226378 -77617478 - L2a LINE L2 0 3426 3315 4 922 23 54 0 0 chr11 44226970 44227007 -77616849 + AT_rich Low_complexity Low_complexity 1 37 0 4 922 844 166 14 7 chr11 44227377 44227517 -77616339 + B1_Mur3 SINE Alu 2 142 -7 4 922 782 264 36 36 chr11 44227552 44227772 -77616084 + ID_B1 SINE B4 2 221 -3 4 922 532 200 87 22 chr11 44228484 44228622 -77615234 - MTD LTR MaLR 0 419 273 4 922 650 216 6 61 chr11 44228620 44228783 -77615073 - MTD LTR MaLR -265 154 1 4 922 321 181 97 0 chr11 44230019 44230091 -77613765 - RMER19C LTR ERVK -267 344 266 4 922 308 261 11 11 chr11 44230205 44230298 -77613558 + MIR SINE MIR 92 184 -78 4 922 546 295 18 22 chr11 44231260 44231482 -77612374 - RodERV21-int LTR ERV1 -140 4851 4631 4 922 1848 328 63 30 chr11 44231497 44232333 -77611523 - RodERV21-int LTR ERV1 -473 4518 3655 4 922 1016 311 65 72 chr11 44232388 44233240 -77610616 - RodERV21-int LTR ERV1 -1423 3568 2723 4 922 320 236 24 7 chr11 44233495 44233658 -77610198 - MuLV-int LTR ERV1 -2658 4948 4890 4 922 5700 229 39 17 chr11 44233685 44234891 -77608965 - RodERV21-int LTR ERV1 -2315 2676 1445 4 922 203 152 0 21 chr11 44234916 44234963 -77608893 + (CATA)n Simple_repeat Simple_repeat 2 47 0 4 922 325 146 51 51 chr11 44234965 44235102 -77608754 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 4 922 1664 264 28 124 chr11 44235112 44235899 -77607957 - RodERV21-int LTR ERV1 -3552 1439 729 4 922 509 302 83 58 chr11 44236619 44236916 -77606940 - ORR1E LTR MaLR 0 359 59 4 922 280 0 0 48 chr11 44236916 44236958 -77606898 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 4 922 509 302 83 58 chr11 44236958 44237008 -77606848 - ORR1E LTR MaLR -301 58 5 4 922 255 61 0 0 chr11 44238256 44238289 -77605567 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 922 184 282 152 13 chr11 44238659 44238738 -77605118 - MIR3 SINE MIR -108 100 11 4 922 1090 274 62 8 chr11 44238957 44239310 -77604546 + MTEb LTR MaLR 1 372 -7 4 922 273 298 83 65 chr11 44239723 44239892 -77603964 - MLT1C LTR MaLR -2 608 437 4 922 189 171 0 0 chr11 44240005 44240040 -77603816 + (TTG)n Simple_repeat Simple_repeat 1 35 0 4 922 1069 103 0 0 chr11 44240258 44240413 -77603443 + B2_Mm2 SINE B2 1 155 -40 4 922 369 0 0 0 chr11 44240413 44240454 -77603402 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 922 776 48 19 0 chr11 44240466 44240570 -77603286 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 4 922 467 212 141 72 chr11 44240640 44240825 -77603031 - MTE2a LTR MaLR -3 376 153 4 922 1099 265 128 0 chr11 44241889 44242217 -77601639 + ORR1D2 LTR MaLR 1 370 0 4 922 601 339 55 25 chr11 44242555 44242882 -77600974 - MLT1C LTR MaLR -130 337 1 4 922 563 276 119 3 chr11 44243004 44243316 -77600540 - L1MC4a LINE L1 -66 7816 7469 4 922 409 161 23 0 chr11 44243334 44243421 -77600435 + CT-rich Low_complexity Low_complexity 3 91 0 4 922 508 255 27 41 chr11 44243496 44243643 -77600213 - RSINE1 SINE B4 -19 146 2 4 922 354 304 112 4 chr11 44243644 44243885 -77599971 - L1MC4a LINE L1 -442 7440 7174 4 922 674 35 0 0 chr11 44243898 44243985 -77599871 - BC1_Mm scRNA scRNA -65 87 1 4 922 394 263 155 5 chr11 44244284 44244471 -77599385 + MamRep434 DNA TcMar 136 350 -76 4 922 243 0 0 0 chr11 44244493 44244520 -77599336 + (A)n Simple_repeat Simple_repeat 1 27 0 4 922 184 300 0 0 chr11 44244610 44244670 -77599186 - L2a LINE L2 -24 3402 3343 4 922 2946 38 32 0 chr11 44244927 44245273 -77598583 + IAPEY2_LTR LTR ERVK 1 357 0 4 922 435 295 57 0 chr11 44245546 44245668 -77598188 - RSINE1 SINE B4 -29 136 8 4 922 223 241 37 0 chr11 44246168 44246222 -77597634 + B3A SINE B2 1 56 -142 4 922 479 324 49 29 chr11 44246473 44246781 -77597075 + MER57D LTR ERV1 87 400 -11 4 922 388 174 0 95 chr11 44247370 44247465 -77596391 + B4A SINE B4 1 86 -206 4 922 222 323 48 0 chr11 44247493 44247555 -77596301 + RSINE1 SINE B4 88 152 -13 4 922 453 19 0 0 chr11 44247558 44247612 -77596244 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 922 729 239 5 47 chr11 44247956 44248149 -77595707 - B3A SINE B2 -10 188 4 4 922 309 267 154 7 chr11 44248286 44248422 -77595434 - MLT1A0 LTR MaLR 0 365 210 4 922 214 182 0 0 chr11 44248479 44248523 -77595333 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 4 922 1119 232 83 92 chr11 44249270 44249626 -77594230 + ORR1E LTR MaLR 1 414 -7 4 922 754 158 298 0 chr11 44249877 44250035 -77593821 + B3 SINE B2 1 205 -11 4 922 243 370 46 9 chr11 44250229 44250338 -77593518 + B4A SINE B4 104 216 -76 4 922 440 305 99 0 chr11 44250386 44250517 -77593339 + Lx8 LINE L1 6820 6963 -510 4 922 252 314 98 0 chr11 44250523 44250625 -77593231 + MLT1E1A LTR MaLR 536 647 -33 4 922 1693 170 173 19 chr11 44250625 44250990 -77592866 + MTC LTR MaLR 1 421 0 4 922 1155 37 0 0 chr11 44251237 44251371 -77592485 - B1_Mm SINE Alu -12 135 2 4 922 780 129 15 0 chr11 44251618 44251750 -77592106 - Lx2A1 LINE L1 -5 7003 6870 4 922 3024 118 51 25 chr11 44251750 44252236 -77591620 + Lx2B LINE L1 6370 6868 -132 4 922 661 139 3 23 chr11 44252585 44252721 -77591135 + Lx2 LINE L1 6634 6772 -225 4 922 217 319 0 0 chr11 44252874 44252943 -77590913 + B4 SINE B4 27 95 -197 4 922 258 32 0 0 chr11 44253006 44253037 -77590819 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 922 228 67 0 0 chr11 44253043 44253073 -77590783 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 922 888 259 170 19 chr11 44253214 44253537 -77590319 + MTE2b LTR MaLR 1 372 -7 4 922 1301 103 11 21 chr11 44253651 44253839 -77590017 + B2_Mm1t SINE B2 2 187 -6 4 922 1180 108 0 6 chr11 44254101 44254278 -77589578 + B2_Mm2 SINE B2 2 177 -18 4 922 202 229 0 20 chr11 44254298 44254347 -77589509 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 922 533 287 7 20 chr11 44254347 44254500 -77589356 - B4A SINE B4 0 292 142 4 922 395 344 32 6 chr11 44254705 44254863 -77588993 + RSINE1 SINE B4 3 164 -1 4 922 2327 0 0 0 chr11 44255043 44255297 -77588559 - L1Md_T LINE L1 0 6582 6329 4 922 998 177 138 71 chr11 44255362 44255704 -77588152 + RMER16 LTR ERVK 1 533 0 4 922 216 0 0 0 chr11 44255711 44255735 -77588121 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 922 444 37 0 0 chr11 44255905 44255959 -77587897 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 922 385 288 72 0 chr11 44255961 44256072 -77587784 - RSINE1 SINE B4 -24 141 23 4 922 329 0 0 24 chr11 44256098 44256140 -77587716 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 922 530 164 106 0 chr11 44256165 44256269 -77587587 - B1_Mur2 SINE Alu -27 122 8 4 922 1721 117 43 61 chr11 44256552 44256881 -77586975 - ORR1A4 LTR MaLR 0 329 7 4 922 348 338 53 16 chr11 44256955 44257202 -77586654 + RMER15 LTR ERVL 320 575 0 4 922 1132 221 4 57 chr11 44257482 44257746 -77586110 - RLTR14 LTR ERV1 -132 250 1 4 922 321 117 188 38 chr11 44257938 44258018 -77585838 - RLTR31B_Mm LTR ERVK -5 552 461 4 922 321 313 40 7 chr11 44258059 44258210 -77585646 + RMER15 LTR ERVL 380 535 -40 4 922 520 188 68 0 chr11 44258223 44258340 -77585516 + RLTR31A_Mm LTR ERVK 239 363 -221 4 922 874 152 14 20 chr11 44258641 44258789 -77585067 - B1_Mus2 SINE Alu 0 147 1 4 922 6510 59 11 1 chr11 44258881 44259681 -77584175 - RLTR13C2 LTR ERVK 0 808 1 4 922 1064 131 19 0 chr11 44259692 44259852 -77584004 - ETnERV3-int LTR ERVK -28 5780 5618 4 922 1355 183 20 4 chr11 44259918 44260170 -77583686 + Lx9 LINE L1 7202 7457 -187 4 922 516 72 0 0 chr11 44260170 44260239 -77583617 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 922 558 179 17 0 chr11 44260241 44260358 -77583498 + Lx9 LINE L1 7517 7635 -9 4 922 265 218 215 13 chr11 44260545 44260624 -77583232 + PB1D7 SINE Alu 21 115 -5 4 922 555 300 81 24 chr11 44260631 44260877 -77582979 - ORR1E LTR MaLR 0 359 100 4 922 705 269 13 98 chr11 44261063 44261298 -77582558 + B3 SINE B2 2 216 0 5 922 22 35 0 0 chr11 44262274 44262303 -77581553 + AT_rich Low_complexity Low_complexity 1 29 0 5 922 250 238 129 45 chr11 44262309 44262511 -77581345 - Lx7 LINE L1 -18 7678 7460 5 922 821 238 50 6 chr11 44262625 44262807 -77581049 - Lx7 LINE L1 -438 7258 7069 5 922 630 252 88 29 chr11 44262839 44263043 -77580813 - B3 SINE B2 0 216 1 5 922 838 228 74 145 chr11 44263825 44264205 -77579651 - MTE2a LTR MaLR -17 362 10 5 922 667 309 5 10 chr11 44264207 44264382 -77579474 + B3A SINE B2 2 176 -22 5 922 180 111 0 0 chr11 44264382 44264409 -77579447 + (CATG)n Simple_repeat Simple_repeat 4 30 0 5 922 667 309 5 10 chr11 44264409 44264426 -77579430 + B3A SINE B2 177 193 -5 5 922 3898 149 49 45 chr11 44265669 44266463 -77577393 + RLTR13D1 LTR ERVK 1 797 -9 5 922 549 332 152 12 chr11 44267379 44267635 -77576221 + B4A SINE B4 1 292 0 5 922 339 225 111 11 chr11 44270405 44270495 -77573361 - RSINE1 SINE B4 -8 157 59 5 922 850 142 233 0 chr11 44272336 44272512 -77571344 - URR1B DNA MER1_type 0 225 9 5 922 26 64 0 0 chr11 44273899 44273946 -77569910 + AT_rich Low_complexity Low_complexity 1 47 0 5 922 542 158 0 31 chr11 44273946 44274044 -77569812 - B1_Mur1 SINE Alu -7 142 48 5 922 199 282 0 0 chr11 44275676 44275737 -77568119 - MIRc SINE MIR -135 141 81 5 922 393 232 0 78 chr11 44276098 44276290 -77567566 + GA-rich Low_complexity Low_complexity 3 179 0 5 922 1629 198 142 8 chr11 44277932 44278299 -77565557 - MTD LTR MaLR -3 416 1 5 922 1169 84 121 0 chr11 44278375 44278541 -77565315 + B2_Mm1t SINE B2 2 187 -6 5 922 552 62 0 0 chr11 44278593 44278673 -77565183 - L1Md_F2 LINE L1 -1 6581 6502 5 922 26 30 0 0 chr11 44280168 44280201 -77563655 + AT_rich Low_complexity Low_complexity 1 33 0 5 922 302 302 196 6 chr11 44280848 44281021 -77562835 + MIR SINE MIR 23 228 -34 5 922 1064 73 0 0 chr11 44281200 44281336 -77562520 - L1_Mus3 LINE L1 -500 6138 6003 5 922 3299 72 70 9 chr11 44281337 44281796 -77562060 + L1_Mus3 LINE L1 6152 6638 0 5 922 363 23 0 0 chr11 44282501 44282545 -77561311 + (AGCTG)n Simple_repeat Simple_repeat 2 45 0 5 922 21 71 0 0 chr11 44283510 44283552 -77560304 + GC_rich Low_complexity Low_complexity 1 42 0 5 922 449 186 109 31 chr11 44284953 44285081 -77558775 + B1F SINE Alu 11 148 -1 5 922 449 204 90 20 chr11 44285356 44285456 -77558400 - PB1D9 SINE Alu -13 107 1 5 922 344 250 13 0 chr11 44285707 44285783 -77558073 - B3 SINE B2 -99 117 41 5 922 299 272 47 0 chr11 44286115 44286201 -77557655 - BC1_Mm scRNA scRNA -57 95 6 5 922 404 316 51 6 chr11 44286365 44286521 -77557335 + RSINE1 SINE B4 3 165 0 5 922 21 36 0 0 chr11 44286521 44286549 -77557307 + AT_rich Low_complexity Low_complexity 1 28 0 5 922 322 147 14 14 chr11 44287038 44287107 -77556749 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 922 272 196 14 21 chr11 44287918 44288059 -77555797 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 5 922 27 0 0 0 chr11 44288068 44288095 -77555761 + AT_rich Low_complexity Low_complexity 1 27 0 5 922 268 307 137 87 chr11 44288129 44288450 -77555406 - ORR1E LTR MaLR -17 342 6 5 922 355 212 150 10 chr11 44288608 44288708 -77555148 - PB1D10 SINE Alu 0 117 4 5 922 331 286 87 53 chr11 44288978 44289010 -77554846 - L1MD1 LINE L1 -321 5921 5889 5 922 1829 199 70 0 chr11 44289010 44289367 -77554489 + RLTR14 LTR ERV1 1 382 0 5 922 331 286 87 53 chr11 44289367 44289541 -77554315 - L1MD1 LINE L1 -354 5888 5708 5 922 830 266 115 54 chr11 44289546 44290067 -77553789 - L1MDa LINE L1 -4090 2543 1991 5 922 689 280 61 32 chr11 44290089 44290336 -77553520 - ORR1E LTR MaLR -105 254 1 5 922 277 355 0 88 chr11 44290548 44290684 -77553172 - L1MDa LINE L1 -5883 750 627 5 922 400 285 91 0 chr11 44290942 44291102 -77552754 - MER68 LTR ERVL -14 549 375 5 922 584 295 64 67 chr11 44291102 44291462 -77552394 - ORR1E LTR MaLR 0 359 1 5 922 1668 251 21 35 chr11 44291555 44291980 -77551876 + MTD LTR MaLR 1 419 0 5 922 253 304 107 65 chr11 44292005 44292174 -77551682 - MER68 LTR ERVL -339 224 49 5 922 215 51 0 71 chr11 44292233 44292255 -77551601 + (A)n Simple_repeat Simple_repeat 1 20 0 5 922 1207 41 0 39 chr11 44292255 44292408 -77551448 + B1_Mm SINE Alu 1 147 0 5 922 215 51 0 71 chr11 44292408 44292427 -77551429 + (A)n Simple_repeat Simple_repeat 1 19 0 5 922 207 0 0 0 chr11 44292556 44292579 -77551277 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 922 1993 118 74 20 chr11 44292965 44293318 -77550538 - ORR1B1 LTR MaLR -21 373 2 5 922 24 0 0 0 chr11 44294454 44294478 -77549378 + AT_rich Low_complexity Low_complexity 1 24 0 5 922 1265 113 23 0 chr11 44294729 44294906 -77548950 + B2_Mm2 SINE B2 1 181 -14 5 922 26 30 0 0 chr11 44295917 44295950 -77547906 + AT_rich Low_complexity Low_complexity 1 33 0 5 922 216 250 17 0 chr11 44296464 44296524 -77547332 - PB1D10 SINE Alu -56 61 1 5 922 726 234 47 28 chr11 44297579 44297790 -77546066 - B3 SINE B2 -1 215 1 5 922 1282 238 117 26 chr11 44298564 44298948 -77544908 - MTD LTR MaLR 0 419 1 5 922 468 195 67 8 chr11 44299384 44299503 -77544353 + L1MC LINE L1 5588 5713 -631 5 922 899 186 137 5 chr11 44299610 44299815 -77544041 + L1_Rod LINE L1 291 522 -6650 5 922 286 170 109 43 chr11 44299813 44299905 -77543951 + L1MC LINE L1 5700 5797 -536 5 922 1102 214 5 27 chr11 44300021 44300242 -77543614 + B3 SINE B2 1 216 0 5 922 483 18 0 0 chr11 44300369 44300425 -77543431 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 922 857 261 42 57 chr11 44300452 44300716 -77543140 - B4 SINE B4 -8 284 25 5 922 3950 137 42 23 chr11 44301218 44301881 -77541975 - Lx4A LINE L1 0 7058 6383 5 922 2459 108 43 0 chr11 44301882 44302251 -77541605 + Lx4A LINE L1 5985 6369 -689 5 923 1698 152 43 78 chr11 44302706 44303078 -77540778 + ORR1B2 LTR MaLR 1 359 -8 5 923 253 250 141 60 chr11 44303198 44303347 -77540509 - RSINE1 SINE B4 0 165 5 5 923 1125 55 14 0 chr11 44303372 44303517 -77540339 - B1_Mus1 SINE Alu 0 148 2 5 923 556 264 76 33 chr11 44304094 44304278 -77539578 - B3A SINE B2 -6 192 1 5 923 216 0 0 0 chr11 44305554 44305578 -77538278 + (A)n Simple_repeat Simple_repeat 1 24 0 5 923 410 177 0 0 chr11 44306288 44306367 -77537489 - B1_Mur4 SINE Alu 0 150 72 5 923 326 154 48 71 chr11 44306367 44306433 -77537423 + PB1D9 SINE Alu 38 105 -15 5 923 2245 129 3 0 chr11 44306433 44306759 -77537097 - ORR1A2 LTR MaLR 0 327 1 5 923 326 154 48 71 chr11 44306759 44306776 -77537080 + PB1D9 SINE Alu 106 119 -1 5 923 21 0 0 0 chr11 44306785 44306806 -77537050 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 4643 75 0 2 chr11 44307455 44308040 -77535816 + MT2B2 LTR ERVL 1 584 0 5 923 324 313 6 57 chr11 44308945 44309080 -77534776 - HAL1-2a_MD LINE L1 -524 2500 2370 5 923 1460 17 0 32 chr11 44309080 44309268 -77534588 + (TGG)n Simple_repeat Simple_repeat 1 185 -184 5 923 1460 17 0 32 chr11 44309278 44309462 -77534394 + (TGG)n Simple_repeat Simple_repeat 186 369 0 5 923 324 313 6 57 chr11 44309462 44309474 -77534382 - HAL1-2a_MD LINE L1 -663 2361 2350 5 923 281 298 16 55 chr11 44310086 44310237 -77533619 + L1MB7 LINE L1 6034 6178 -6 5 923 469 274 37 104 chr11 44310590 44310887 -77532969 + Lx8 LINE L1 7190 7466 -7 5 923 307 268 197 45 chr11 44311029 44311252 -77532604 + B4A SINE B4 1 257 -35 5 923 957 65 0 0 chr11 44311300 44311438 -77532418 + (CA)n Simple_repeat Simple_repeat 2 139 0 5 923 239 0 32 0 chr11 44311887 44311918 -77531938 + (CAAAAA)n Simple_repeat Simple_repeat 6 37 0 5 923 1042 30 88 7 chr11 44313019 44313155 -77530701 + B1_Mus2 SINE Alu 1 147 0 5 923 336 276 205 18 chr11 44313518 44313684 -77530172 - B3A SINE B2 0 198 2 5 923 183 129 0 0 chr11 44313705 44313736 -77530120 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 923 785 30 0 0 chr11 44313736 44313836 -77530020 - B1_Mm SINE Alu -1 146 47 5 923 1116 83 0 7 chr11 44313843 44313989 -77529867 - B1_Mm SINE Alu -1 146 2 5 923 503 216 12 12 chr11 44314096 44314265 -77529591 + GA-rich Low_complexity Low_complexity 3 171 0 5 923 252 152 87 0 chr11 44314500 44314546 -77529310 - MTC LTR MaLR -371 50 1 5 923 469 298 115 42 chr11 44314567 44314784 -77529072 - ORR1E LTR MaLR -104 255 23 5 923 2073 161 107 36 chr11 44314785 44315178 -77528678 + MTC LTR MaLR 1 421 0 5 923 181 331 88 41 chr11 44315421 44315591 -77528265 + L2c LINE L2 3048 3225 -162 5 923 334 275 36 9 chr11 44315678 44315788 -77528068 - Tigger5 DNA MER2_type -4 2402 2290 5 923 312 369 86 43 chr11 44315803 44315990 -77527866 - Tigger5 DNA MER2_type -2211 195 1 5 923 294 132 36 36 chr11 44316254 44316309 -77527547 + PB1D9 SINE Alu 5 59 -61 5 923 210 176 0 0 chr11 44316309 44316343 -77527513 + (CAGAGA)n Simple_repeat Simple_repeat 5 38 0 5 923 472 68 27 0 chr11 44316343 44316417 -77527439 + B1_Mur3 SINE Alu 42 117 -32 5 923 1435 77 0 20 chr11 44317220 44317418 -77526438 - B2_Mm2 SINE B2 0 195 2 5 923 900 249 98 38 chr11 44317429 44317761 -77526095 - Lx8 LINE L1 -471 7173 6804 5 923 421 291 71 75 chr11 44319255 44319467 -77524389 - B3A SINE B2 -2 214 4 5 923 6985 55 0 8 chr11 44320063 44320936 -77522920 + L1Md_F2 LINE L1 5715 6580 -2 5 923 326 309 55 16 chr11 44320953 44321081 -77522775 + RMER15 LTR ERVL 337 469 -106 5 923 934 249 10 0 chr11 44321453 44321650 -77522206 - B3 SINE B2 -12 204 6 5 923 544 342 0 0 chr11 44321742 44321897 -77521959 + RSINE1 SINE B4 7 161 -4 5 923 241 262 92 138 chr11 44321746 44321941 -77521915 + B2_Mm2 SINE B2 10 195 0 5 923 253 167 0 20 chr11 44323479 44323528 -77520328 + PB1 SINE Alu 72 119 -8 5 923 653 274 35 84 chr11 44324504 44324731 -77519125 - B3A SINE B2 0 216 1 5 923 230 0 33 0 chr11 44324732 44324762 -77519094 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 923 2117 167 73 11 chr11 44324816 44325270 -77518586 + RLTR20B3 LTR ERVK 1 482 -95 6 923 221 391 0 0 chr11 44325325 44325412 -77518444 - ID_B1 SINE B4 -58 166 80 6 923 227 277 134 124 chr11 44325424 44325480 -77518376 + MER47B DNA MER2_type 46 102 -316 6 923 781 166 65 0 chr11 44325480 44325619 -77518237 - B1_Mur3 SINE Alu 0 149 2 6 923 283 289 98 78 chr11 44325619 44325859 -77517997 + MER47B DNA MER2_type 103 418 0 6 923 599 155 0 20 chr11 44326913 44327064 -77516792 + (CA)n Simple_repeat Simple_repeat 2 149 0 6 923 487 302 17 0 chr11 44327375 44327494 -77516362 - B4 SINE B4 -95 197 77 6 923 503 235 86 8 chr11 44327518 44327775 -77516081 - Lx9 LINE L1 -3 7641 7333 6 923 339 265 95 50 chr11 44327889 44328068 -77515788 + L1MB8 LINE L1 5967 6153 -25 6 923 710 252 17 194 chr11 44328143 44328667 -77515189 - RLTR11B LTR ERVK -24 504 16 6 923 1762 114 86 46 chr11 44328672 44329020 -77514836 - ORR1C1 LTR MaLR -16 362 1 6 923 517 328 11 28 chr11 44329268 44329447 -77514409 - B4A SINE B4 -112 180 5 6 923 652 247 58 71 chr11 44330868 44331108 -77512748 + MTE2b LTR MaLR 130 366 -13 6 923 913 200 64 44 chr11 44331162 44331366 -77512490 - B3 SINE B2 -7 209 2 6 923 263 290 0 36 chr11 44332815 44332926 -77510930 + (CCCCG)n Simple_repeat Simple_repeat 2 108 0 6 923 201 146 0 0 chr11 44334293 44334341 -77509515 + (T)n Simple_repeat Simple_repeat 1 48 0 6 923 270 267 105 0 chr11 44335274 44335360 -77508496 - RSINE1 SINE B4 0 165 71 6 923 1168 68 0 0 chr11 44335753 44335899 -77507957 - B1_Mm SINE Alu -1 146 1 6 923 450 196 0 0 chr11 44336410 44336502 -77507354 + (TATG)n Simple_repeat Simple_repeat 3 94 0 6 923 513 252 0 17 chr11 44336676 44336793 -77507063 - RSINE1 SINE B4 -49 116 2 6 923 631 221 153 11 chr11 44336805 44336988 -77506868 - MER2 DNA MER2_type -135 210 2 6 923 216 0 0 0 chr11 44339089 44339113 -77504743 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 6 923 339 96 0 0 chr11 44339113 44339165 -77504691 + (T)n Simple_repeat Simple_repeat 1 52 0 6 923 1191 75 0 0 chr11 44339168 44339315 -77504541 - B1_Mm SINE Alu 0 147 1 6 923 972 212 19 10 chr11 44339343 44339548 -77504308 - B3 SINE B2 -7 209 3 6 923 256 244 97 73 chr11 44340208 44340332 -77503524 - MER45R DNA Tip100 -575 1006 880 6 923 314 188 0 158 chr11 44340788 44340883 -77502973 - PB1D10 SINE Alu 0 117 38 6 923 263 271 144 89 chr11 44340793 44340939 -77502917 - ID_B1 SINE B4 -2 222 69 6 923 314 301 58 10 chr11 44341046 44341150 -77502706 + B1F1 SINE Alu 1 109 -40 6 923 207 0 0 0 chr11 44341164 44341187 -77502669 + (G)n Simple_repeat Simple_repeat 1 23 0 6 923 579 240 67 45 chr11 44341821 44342000 -77501856 - B4 SINE B4 -69 223 41 6 923 1037 272 87 26 chr11 44342015 44342396 -77501460 - MTD LTR MaLR -14 405 2 6 923 336 48 0 0 chr11 44343204 44343246 -77500610 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 6 923 862 197 94 40 chr11 44343338 44343539 -77500317 - B3 SINE B2 -4 212 1 6 923 470 262 68 14 chr11 44343541 44343688 -77500168 + Charlie20a DNA Charlie 394 548 -259 6 923 207 125 0 0 chr11 44343846 44343886 -77499970 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 6 923 221 93 70 0 chr11 44344939 44344982 -77498874 + T-rich Low_complexity Low_complexity 2 47 0 6 923 910 220 68 5 chr11 44345150 44345369 -77498487 - MT2A LTR ERVL -227 306 74 6 923 192 307 131 23 chr11 44346905 44347035 -77496821 + MIRb SINE MIR 123 266 -2 6 923 212 0 36 0 chr11 44347739 44347767 -77496089 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 923 386 102 56 33 chr11 44347770 44347865 -77495991 - B1_Mm SINE Alu -1 148 48 6 923 1395 149 18 0 chr11 44348243 44348465 -77495391 - URR1A DNA MER1_type 0 226 1 6 923 606 279 92 11 chr11 44348614 44348788 -77495068 - B4A SINE B4 -102 190 3 6 923 673 296 160 18 chr11 44349068 44349505 -77494351 - L1M4 LINE L1 -432 5752 5254 6 923 324 0 0 0 chr11 44349911 44349947 -77493909 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 923 550 281 78 0 chr11 44349950 44350078 -77493778 - RSINE1 SINE B4 -24 141 4 6 923 285 98 0 0 chr11 44350974 44351015 -77492841 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 923 296 61 0 20 chr11 44351360 44351394 -77492462 + (TTTTTG)n Simple_repeat Simple_repeat 6 38 0 6 923 1174 62 7 0 chr11 44351394 44351540 -77492316 - B1_Mus2 SINE Alu 0 147 1 6 923 296 61 0 20 chr11 44351540 44351555 -77492301 + (TTTTTG)n Simple_repeat Simple_repeat 3 17 0 6 923 547 310 142 24 chr11 44351979 44352233 -77491623 - B4A SINE B4 0 292 9 6 923 252 301 36 0 chr11 44352235 44352318 -77491538 + CT-rich Low_complexity Low_complexity 4 89 0 6 923 382 189 9 144 chr11 44353415 44353526 -77490330 + MT2B LTR ERVL 162 257 -344 6 923 828 156 7 0 chr11 44353433 44353568 -77490288 + B1_Mus2 SINE Alu 10 145 -2 6 923 516 301 126 57 chr11 44353917 44354266 -77489590 - MTD LTR MaLR -44 375 3 6 923 305 208 150 106 chr11 44354631 44354744 -77489112 - MER20 DNA MER1_type -51 168 51 6 923 21 0 0 0 chr11 44354925 44354946 -77488910 + AT_rich Low_complexity Low_complexity 1 21 0 6 923 381 281 123 18 chr11 44355425 44355595 -77488261 + B3 SINE B2 25 212 -4 6 923 216 0 0 0 chr11 44356271 44356295 -77487561 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 923 762 11 0 0 chr11 44356578 44356665 -77487191 + (TTTCC)n Simple_repeat Simple_repeat 2 88 0 6 923 219 146 0 0 chr11 44356667 44356708 -77487148 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 6 923 441 248 277 0 chr11 44356715 44356856 -77487000 - ID_B1 SINE B4 -5 219 40 6 923 1139 75 0 0 chr11 44356917 44357064 -77486792 + B1_Mus1 SINE Alu 2 148 0 6 923 206 238 0 0 chr11 44357064 44357106 -77486750 + A-rich Low_complexity Low_complexity 2 43 0 6 923 204 111 0 0 chr11 44357569 44357605 -77486251 + (CTTG)n Simple_repeat Simple_repeat 2 37 0 6 923 391 141 26 0 chr11 44357607 44357685 -77486171 + CT-rich Low_complexity Low_complexity 2 81 0 6 923 252 275 21 52 chr11 44357707 44357803 -77486053 - RSINE1 SINE B4 0 165 73 6 923 225 262 99 36 chr11 44358383 44358494 -77485362 + Charlie5 DNA MER1_type 2480 2597 -27 6 923 180 0 0 0 chr11 44358680 44358700 -77485156 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 6 923 232 309 32 0 chr11 44358980 44359074 -77484782 + CT-rich Low_complexity Low_complexity 4 100 0 6 923 228 100 0 0 chr11 44359240 44359280 -77484576 + (T)n Simple_repeat Simple_repeat 1 40 0 6 923 1259 34 7 0 chr11 44359280 44359426 -77484430 - B1_Mm SINE Alu 0 147 1 6 923 261 296 12 12 chr11 44359480 44359562 -77484294 + ID4 SINE ID 2 83 0 6 923 861 48 156 16 chr11 44360462 44360590 -77483266 - B1_Mus2 SINE Alu -1 146 1 6 923 280 297 13 26 chr11 44360665 44360741 -77483115 + PB1D10 SINE Alu 13 87 -30 6 923 763 221 5 80 chr11 44361041 44361253 -77482603 + B3A SINE B2 1 196 -2 6 923 537 110 0 0 chr11 44361957 44362039 -77481817 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 923 294 217 89 78 chr11 44362043 44362133 -77481723 - RSINE1 SINE B4 -40 125 35 6 923 216 163 0 0 chr11 44362148 44362191 -77481665 + CT-rich Low_complexity Low_complexity 3 45 0 6 923 216 97 0 0 chr11 44362191 44362222 -77481634 + (CACCAT)n Simple_repeat Simple_repeat 1 31 0 6 923 23 33 0 0 chr11 44363831 44363861 -77479995 + AT_rich Low_complexity Low_complexity 1 30 0 6 923 475 245 111 26 chr11 44363863 44364052 -77479804 + B3 SINE B2 1 205 -11 6 923 901 220 25 0 chr11 44364623 44364823 -77479033 - B3 SINE B2 -11 205 1 6 923 22 0 0 0 chr11 44365087 44365109 -77478747 + AT_rich Low_complexity Low_complexity 1 22 0 6 923 820 196 46 112 chr11 44365883 44366124 -77477732 - RMER12 LTR ERVK -100 1222 998 6 923 1577 241 73 97 chr11 44366171 44367017 -77476839 - RMER12 LTR ERVK -1008 800 1 6 923 806 255 82 55 chr11 44367130 44367387 -77476469 - B4A SINE B4 -27 265 2 6 923 659 144 27 0 chr11 44368270 44368381 -77475475 + PB1D9 SINE Alu 1 114 -6 6 923 238 98 24 24 chr11 44368415 44368457 -77475399 + PB1D9 SINE Alu 78 119 -1 6 923 393 39 0 0 chr11 44369098 44369149 -77474707 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 923 842 236 94 0 chr11 44369312 44369503 -77474353 - B3 SINE B2 -7 209 1 6 923 279 0 0 0 chr11 44370112 44370143 -77473713 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 923 1247 63 0 0 chr11 44370148 44370307 -77473549 - B2_Mm1t SINE B2 -34 159 1 6 923 553 322 66 4 chr11 44371068 44371339 -77472517 - B4A SINE B4 -2 290 3 6 923 1453 60 16 0 chr11 44371695 44371877 -77471979 - B2_Mm2 SINE B2 -9 186 2 6 923 26 64 0 0 chr11 44371957 44372004 -77471852 + AT_rich Low_complexity Low_complexity 1 47 0 6 923 435 87 0 0 chr11 44372104 44372173 -77471683 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 923 410 251 11 2 chr11 44372185 44372296 -77471560 - B4A SINE B4 -75 217 106 6 923 186 304 131 57 chr11 44373029 44373151 -77470705 + L4 LINE RTE 1692 1822 -207 6 923 207 69 0 0 chr11 44376603 44376632 -77467224 + (C)n Simple_repeat Simple_repeat 1 29 0 6 923 365 238 37 28 chr11 44379176 44379284 -77464572 - B1_Mur1 SINE Alu -1 148 40 6 923 244 303 0 0 chr11 44379284 44379360 -77464496 + (CCTG)n Simple_repeat Simple_repeat 3 78 0 6 923 224 245 0 0 chr11 44379366 44379415 -77464441 - B1F SINE Alu -92 57 9 6 923 327 240 166 33 chr11 44379440 44379591 -77464265 - Lx8 LINE L1 -3 7470 7300 7 923 380 191 126 76 chr11 44379599 44379718 -77464138 - Lx8 LINE L1 -360 7113 6989 7 923 1116 82 0 33 chr11 44380303 44380455 -77463401 + B1_Mus1 SINE Alu 1 147 -1 7 923 1825 169 44 39 chr11 44380691 44381054 -77462802 + ORR1C1 LTR MaLR 3 367 -11 7 923 272 311 78 0 chr11 44381252 44381342 -77462514 - RSINE1 SINE B4 -61 104 8 7 923 735 188 93 7 chr11 44381352 44381502 -77462354 - RSINE1 SINE B4 0 165 3 7 923 377 253 88 108 chr11 44381818 44382241 -77461615 + MYSERV-int LTR ERVK 5339 5513 -1037 7 923 690 196 65 82 chr11 44382395 44382796 -77461060 + MYSERV6-int LTR ERVK 7150 7320 -1639 7 923 689 270 59 31 chr11 44382801 44383158 -77460698 + MYSERV6-int LTR ERVK 8170 8513 -446 7 923 4647 147 11 48 chr11 44383230 44384067 -77459789 - RLTR13D1 LTR ERVK 0 806 1 7 923 591 187 32 8 chr11 44384071 44384195 -77459661 + MYSERV6-int LTR ERVK 8567 8693 -266 7 923 1068 211 71 131 chr11 44384481 44384971 -77458885 + RLTR19-int LTR ERVK 3384 3844 -2293 7 923 1212 61 0 0 chr11 44385064 44385212 -77458644 - B1_Mus1 SINE Alu 0 148 1 7 923 773 268 101 72 chr11 44385227 44385822 -77458034 + RMER17C-int LTR ERVK 2627 3238 0 7 923 288 0 0 0 chr11 44385943 44385975 -77457881 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 923 507 198 99 82 chr11 44386135 44386317 -77457539 + Lx8 LINE L1 7280 7464 -9 7 923 346 259 200 33 chr11 44386480 44386660 -77457196 - RMER5 LTR ERV1 -277 257 48 7 923 198 103 0 0 chr11 44387347 44387376 -77456480 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 923 180 0 0 0 chr11 44387510 44387530 -77456326 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 7 923 410 252 75 0 chr11 44387546 44387653 -77456203 - B3A SINE B2 -83 115 1 7 923 458 208 0 0 chr11 44387693 44387770 -77456086 + ID4 SINE ID 3 79 -4 7 923 480 205 128 0 chr11 44387872 44387989 -77455867 + MT2B LTR ERVL 1 132 -401 7 923 3779 149 27 20 chr11 44388005 44388643 -77455213 - RLTR26 LTR ERVK 0 642 1 7 923 712 315 21 38 chr11 44388651 44388941 -77454915 + MT2B LTR ERVL 277 561 -40 7 923 298 169 0 63 chr11 44388987 44389050 -77454806 + Ricksha_c DNA MuDR 848 906 -1142 7 923 359 216 22 11 chr11 44389239 44389328 -77454528 + B4A SINE B4 1 90 -202 7 923 1184 42 0 7 chr11 44389335 44389480 -77454376 + B1_Mus1 SINE Alu 2 145 -3 7 923 840 53 0 0 chr11 44389553 44389667 -77454189 + (TG)n Simple_repeat Simple_repeat 2 115 0 7 923 261 192 35 141 chr11 44389765 44389850 -77454006 - RSINE1 SINE B4 0 165 90 7 923 286 250 107 0 chr11 44389894 44389978 -77453878 - RSINE1 SINE B4 -63 102 10 7 923 624 259 52 0 chr11 44389978 44390152 -77453704 - B4 SINE B4 -96 196 14 7 923 345 320 70 22 chr11 44390338 44390565 -77453291 - MER2 DNA MER2_type -1 344 107 7 923 816 260 111 9 chr11 44390679 44390964 -77452892 + MTEb LTR MaLR 53 346 -13 7 923 249 33 0 0 chr11 44391924 44391954 -77451902 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 923 24 0 0 0 chr11 44391990 44392014 -77451842 + AT_rich Low_complexity Low_complexity 1 24 0 7 923 737 165 256 0 chr11 44392014 44392178 -77451678 - B3 SINE B2 -9 207 2 7 923 203 333 0 54 chr11 44392394 44392486 -77451370 - MER5B DNA MER1_type -61 117 31 7 923 1514 238 25 66 chr11 44393066 44393458 -77450398 + MTE2b LTR MaLR 3 378 -1 7 923 1218 48 7 0 chr11 44393670 44393816 -77450040 - B1_Mus1 SINE Alu -1 147 1 7 923 369 0 0 0 chr11 44393882 44393923 -77449933 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 7 923 24 0 0 0 chr11 44394161 44394185 -77449671 + AT_rich Low_complexity Low_complexity 1 24 0 7 923 1166 61 0 0 chr11 44395155 44395302 -77448554 + B1_Mm SINE Alu 1 147 0 7 923 453 76 0 0 chr11 44395344 44395410 -77448446 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 923 1262 143 42 46 chr11 44395582 44395845 -77448011 - RLTR28 LTR ERVL -4 520 259 7 923 257 221 14 29 chr11 44395865 44395935 -77447921 - B4 SINE B4 -219 73 5 7 923 817 170 184 17 chr11 44396913 44396938 -77446918 - B3 SINE B2 -9 207 153 7 923 476 32 16 0 chr11 44396938 44397000 -77446856 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 923 450 0 0 0 chr11 44397001 44397051 -77446805 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 923 817 170 184 17 chr11 44397051 44397197 -77446659 - B3 SINE B2 -64 152 5 7 923 1806 15 0 0 chr11 44397444 44397644 -77446212 + L1Md_T LINE L1 5387 5586 -297 7 923 9172 5 0 0 chr11 44397644 44398640 -77445216 + L1Md_T LINE L1 5587 6582 0 7 923 1075 117 0 16 chr11 44398684 44398866 -77444990 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 7 923 247 299 197 43 chr11 44399189 44399509 -77444347 + L1MC4 LINE L1 7064 7434 -608 7 923 360 0 0 0 chr11 44399509 44399549 -77444307 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 923 247 299 197 43 chr11 44399549 44399644 -77444212 + L1MC4 LINE L1 7435 7543 -499 7 923 182 247 162 20 chr11 44399904 44400003 -77443853 + MIRm SINE MIR 73 185 -91 7 923 4309 67 4 4 chr11 44400138 44400689 -77443167 - L1_Mus3 LINE L1 -1 6637 6087 7 923 526 284 56 20 chr11 44400854 44401052 -77442804 + B4A SINE B4 86 290 -2 7 923 231 308 113 15 chr11 44401171 44401375 -77442481 - MER113 DNA MER1_type -233 288 65 7 923 248 284 22 22 chr11 44401600 44401690 -77442166 + CT-rich Low_complexity Low_complexity 2 91 0 7 923 438 272 0 31 chr11 44402782 44402911 -77440945 + B1F2 SINE Alu 24 148 -1 7 923 678 113 0 0 chr11 44402912 44403027 -77440829 + (CAAAC)n Simple_repeat Simple_repeat 5 119 0 7 923 440 227 201 26 chr11 44403041 44403195 -77440661 + B3A SINE B2 2 182 -16 7 923 245 244 0 11 chr11 44403201 44403288 -77440568 + (CA)n Simple_repeat Simple_repeat 1 86 0 7 923 572 261 0 7 chr11 44404951 44405090 -77438766 - B1F SINE Alu -10 139 2 7 923 294 326 77 61 chr11 44405110 44405423 -77438433 - L1ME3B LINE L1 -65 6175 5858 7 923 346 224 0 50 chr11 44405503 44405583 -77438273 + PB1D10 SINE Alu 1 76 -41 7 923 850 194 5 77 chr11 44406570 44406765 -77437091 + B3A SINE B2 1 181 -17 7 923 195 42 0 0 chr11 44406790 44406814 -77437042 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 923 298 315 78 107 chr11 44407064 44407446 -77436410 + L1MEe LINE L1 1622 1981 -4261 7 923 467 295 56 35 chr11 44407446 44407590 -77436266 + RSINE1 SINE B4 2 148 -17 7 923 1647 277 93 38 chr11 44407590 44408809 -77435047 + L1MEe LINE L1 1982 3296 -2850 7 923 393 22 0 0 chr11 44408927 44408973 -77434883 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 7 923 322 302 20 73 chr11 44409004 44409062 -77434794 + L1MEe LINE L1 3304 3354 -2792 7 923 614 195 0 9 chr11 44409062 44409176 -77434680 - PB1D9 SINE Alu -5 115 3 7 923 322 302 20 73 chr11 44409176 44409267 -77434589 + L1MEe LINE L1 3355 3445 -2701 7 923 833 289 94 15 chr11 44409355 44409696 -77434160 + L1MB2 LINE L1 5797 6164 -7 7 923 427 188 30 40 chr11 44409778 44409878 -77433978 + B1F1 SINE Alu 1 99 -50 7 923 666 143 0 0 chr11 44409889 44410008 -77433848 + (GGGA)n Simple_repeat Simple_repeat 4 122 0 7 923 402 335 96 30 chr11 44410009 44410341 -77433515 + L1MEe LINE L1 3466 3819 -2321 7 923 259 288 12 48 chr11 44410844 44410928 -77432928 - PB1D10 SINE Alu -8 109 29 7 923 1662 42 0 0 chr11 44410965 44411158 -77432698 - B2_Mm1t SINE B2 0 193 1 7 923 195 42 0 0 chr11 44411261 44411285 -77432571 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 923 996 152 0 0 chr11 44411286 44411431 -77432425 - B1_Mur4 SINE Alu -5 145 1 7 923 234 176 0 0 chr11 44411566 44411617 -77432239 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 923 397 217 12 0 chr11 44411620 44411703 -77432153 - B4A SINE B4 -207 85 2 7 923 484 319 42 98 chr11 44411731 44412131 -77431725 + MLT1B LTR MaLR 1 378 -12 7 923 266 0 0 29 chr11 44412604 44412639 -77431217 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 923 805 148 10 0 chr11 44412780 44412924 -77430932 + B1_Mus1 SINE Alu 1 148 0 7 923 1650 37 0 0 chr11 44413026 44413217 -77430639 - B2_Mm1a SINE B2 -2 191 1 7 923 711 110 212 0 chr11 44413254 44413372 -77430484 + B1_Mus1 SINE Alu 2 144 -4 7 923 300 27 0 0 chr11 44413372 44413409 -77430447 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 7 923 207 0 0 0 chr11 44413409 44413431 -77430425 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 923 201 122 0 47 chr11 44413583 44413626 -77430230 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 7 923 259 136 17 17 chr11 44413660 44413720 -77430136 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 923 22 0 0 0 chr11 44413783 44413805 -77430051 + AT_rich Low_complexity Low_complexity 1 22 0 7 923 857 210 92 0 chr11 44413807 44414002 -77429854 - B3 SINE B2 0 216 4 7 923 1429 301 29 54 chr11 44414550 44415101 -77428755 + MER44B DNA MER2_type 7 543 -7 7 923 209 297 16 63 chr11 44415495 44415621 -77428235 + MIR SINE MIR 125 244 -18 7 923 479 45 0 15 chr11 44415684 44415751 -77428105 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 923 387 191 15 0 chr11 44416407 44416475 -77427381 - ID4_ SINE ID -14 69 1 7 923 360 214 40 30 chr11 44416486 44416587 -77427269 - B1F SINE Alu 0 149 48 7 923 461 198 9 0 chr11 44416587 44416703 -77427153 + CT-rich Low_complexity Low_complexity 1 117 0 7 923 2318 55 3 135 chr11 44416775 44417044 -77426812 - ORR1A2 LTR MaLR 0 327 99 7 923 1659 16 5 16 chr11 44417044 44417238 -77426618 - B2_Mm1a SINE B2 0 193 2 7 923 2318 55 3 135 chr11 44417238 44417345 -77426511 - ORR1A2 LTR MaLR -229 98 1 7 923 198 0 0 0 chr11 44417347 44417369 -77426487 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 923 518 284 65 11 chr11 44417369 44417554 -77426302 - B3A SINE B2 -2 196 2 7 923 402 229 0 24 chr11 44417692 44417777 -77426079 - ID4 SINE ID 0 83 1 7 923 403 274 3 116 chr11 44418276 44418444 -77425412 - B1_Mur2 SINE Alu -1 148 1 7 923 2235 169 48 112 chr11 44418481 44419046 -77424810 - RLTR24 LTR ERV1 0 529 1 7 923 205 273 0 0 chr11 44419560 44419604 -77424252 + polypyrimidine Low_complexity Low_complexity 1 44 0 7 923 694 204 21 0 chr11 44419604 44419746 -77424110 - B1F2 SINE Alu -2 147 3 7 923 313 295 62 0 chr11 44420407 44420519 -77423337 - MLT1A LTR MaLR -1 373 255 8 923 269 183 0 32 chr11 44420731 44420793 -77423063 - MLT1A LTR MaLR -314 60 1 8 923 417 109 0 0 chr11 44420922 44420986 -77422870 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 8 923 544 222 33 108 chr11 44420997 44421209 -77422647 - B3A SINE B2 -1 197 2 8 923 371 349 84 7 chr11 44421564 44421850 -77422006 - MLT1I LTR MaLR 0 411 104 8 923 261 324 0 0 chr11 44421967 44422035 -77421821 + polypurine Low_complexity Low_complexity 2 69 0 8 923 886 206 113 5 chr11 44423198 44423393 -77420463 + B3 SINE B2 1 216 0 8 923 27 0 0 0 chr11 44423393 44423420 -77420436 + AT_rich Low_complexity Low_complexity 1 27 0 8 923 433 288 45 0 chr11 44423499 44423811 -77420045 + (ATGTG)n Simple_repeat Simple_repeat 1 326 0 8 923 450 0 0 0 chr11 44424049 44424099 -77419757 + (TAA)n Simple_repeat Simple_repeat 2 51 0 8 923 192 342 13 0 chr11 44427744 44427820 -77416036 - MER5A DNA MER1_type -48 141 65 8 923 468 0 0 0 chr11 44427823 44427875 -77415981 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 923 432 0 0 0 chr11 44427889 44427937 -77415919 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 923 1105 68 15 8 chr11 44428154 44428426 -77415430 + (TCC)n Simple_repeat Simple_repeat 1 274 0 8 923 513 0 0 0 chr11 44429036 44429093 -77414763 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 923 265 359 0 15 chr11 44429707 44429837 -77414019 + CT-rich Low_complexity Low_complexity 4 131 0 8 923 238 194 30 0 chr11 44430911 44430978 -77412878 + CT-rich Low_complexity Low_complexity 1 69 0 8 923 519 101 0 0 chr11 44431277 44431356 -77412500 + (A)n Simple_repeat Simple_repeat 1 79 0 8 923 228 67 0 0 chr11 44431600 44431630 -77412226 + (T)n Simple_repeat Simple_repeat 1 30 0 8 923 184 237 26 26 chr11 44432209 44432365 -77411491 + CT-rich Low_complexity Low_complexity 4 159 0 8 923 266 73 0 24 chr11 44432430 44432472 -77411384 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 923 450 0 0 0 chr11 44433007 44433057 -77410799 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 923 22 0 0 0 chr11 44433220 44433242 -77410614 + AT_rich Low_complexity Low_complexity 1 22 0 8 924 180 143 0 0 chr11 44437590 44437632 -77406224 + (A)n Simple_repeat Simple_repeat 1 42 0 8 924 182 33 0 62 chr11 44438611 44438643 -77405213 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 924 368 289 25 0 chr11 44440030 44440151 -77403705 + MIR SINE MIR 139 262 0 8 924 224 59 29 0 chr11 44441189 44441223 -77402633 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 8 924 309 51 0 0 chr11 44443346 44443385 -77400471 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 924 26 30 0 0 chr11 44443611 44443644 -77400212 + AT_rich Low_complexity Low_complexity 1 33 0 8 924 357 312 167 0 chr11 44443675 44443813 -77400043 - RSINE1 SINE B4 0 165 5 8 924 496 248 8 24 chr11 44443912 44444036 -77399820 + RSINE1 SINE B4 3 124 -41 8 924 589 47 47 0 chr11 44444039 44444145 -77399711 + (CA)n Simple_repeat Simple_repeat 2 112 0 8 924 1270 241 157 15 chr11 44444492 44444956 -77398900 + L1MC4 LINE L1 7513 8042 0 8 924 21 0 0 0 chr11 44444957 44444978 -77398878 + AT_rich Low_complexity Low_complexity 1 21 0 8 924 202 27 108 0 chr11 44446775 44446812 -77397044 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 8 924 208 237 0 0 chr11 44448865 44448903 -77394953 + polypurine Low_complexity Low_complexity 5 42 0 8 924 333 0 0 0 chr11 44449313 44449350 -77394506 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 8 924 1097 129 18 0 chr11 44449350 44449521 -77394335 - B2_Mm2 SINE B2 -21 174 1 8 924 273 336 18 0 chr11 44449829 44449942 -77393914 + MIRb SINE MIR 118 232 -36 8 924 333 0 0 0 chr11 44450333 44450370 -77393486 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 924 522 0 0 0 chr11 44450370 44450427 -77393429 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 924 1214 41 0 0 chr11 44450905 44451051 -77392805 - B1_Mus1 SINE Alu -2 146 1 8 924 250 228 0 0 chr11 44451474 44451531 -77392325 + B1F2 SINE Alu 1 57 -92 8 924 363 305 11 0 chr11 44451551 44451646 -77392210 + B1_Mur1 SINE Alu 42 137 -12 8 924 405 0 0 0 chr11 44451660 44451705 -77392151 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 8 924 399 163 11 0 chr11 44451706 44451798 -77392058 - Lx5 LINE L1 -17 7033 6941 8 924 2107 156 68 13 chr11 44452651 44453046 -77390810 - Lx4B LINE L1 0 7058 6642 8 924 453 303 0 9 chr11 44453118 44453228 -77390628 + RSINE1 SINE B4 53 161 -4 8 924 224 265 0 29 chr11 44454720 44454790 -77389066 + (TTCA)n Simple_repeat Simple_repeat 2 69 0 8 924 221 390 61 24 chr11 44455215 44455428 -77388428 - L2 LINE L2 -541 2878 2658 8 924 189 0 0 0 chr11 44455540 44455561 -77388295 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 924 504 0 0 0 chr11 44455561 44455616 -77388240 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 924 666 238 45 45 chr11 44455873 44456049 -77387807 + ID_B1 SINE B4 49 224 0 8 924 303 28 0 0 chr11 44457836 44457872 -77385984 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 924 304 77 39 0 chr11 44459503 44459555 -77384301 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 8 924 420 55 0 0 chr11 44459880 44459935 -77383921 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 924 1129 146 26 58 chr11 44461812 44462038 -77381818 + URR1B DNA MER1_type 7 225 0 8 924 288 0 0 0 chr11 44462852 44462884 -77380972 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 924 366 23 0 0 chr11 44463632 44463675 -77380181 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 924 513 0 0 0 chr11 44463675 44463731 -77380125 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 924 438 175 0 0 chr11 44465370 44465484 -77378372 + (CA)n Simple_repeat Simple_repeat 2 115 0 8 924 182 33 67 0 chr11 44466360 44466390 -77377466 + (CCCA)n Simple_repeat Simple_repeat 3 34 0 8 924 380 291 55 0 chr11 44466836 44466946 -77376910 - PB1D10 SINE Alu -1 116 1 8 924 191 222 14 87 chr11 44467380 44467449 -77376407 + L2b LINE L2 3307 3370 -5 8 924 259 105 17 17 chr11 44469306 44469364 -77374492 + (TAA)n Simple_repeat Simple_repeat 2 59 0 8 924 405 95 0 0 chr11 44469489 44469552 -77374304 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 924 22 0 0 0 chr11 44470443 44470465 -77373391 + AT_rich Low_complexity Low_complexity 1 22 0 8 924 334 284 94 54 chr11 44472853 44473002 -77370854 - MIR3 SINE MIR -38 170 16 8 924 228 135 0 0 chr11 44473584 44473621 -77370235 + (A)n Simple_repeat Simple_repeat 1 37 0 8 924 220 281 44 22 chr11 44474860 44474951 -77368905 + MIR3 SINE MIR 83 175 -33 8 924 540 0 0 0 chr11 44475750 44475810 -77368046 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 924 209 163 0 20 chr11 44475865 44475915 -77367941 + CT-rich Low_complexity Low_complexity 3 51 0 8 924 304 373 29 19 chr11 44476879 44477084 -77366772 - MIRb SINE MIR -60 208 2 8 924 269 26 26 0 chr11 44478031 44478069 -77365787 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 8 924 225 0 0 0 chr11 44478612 44478637 -77365219 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 8 924 360 0 0 0 chr11 44479708 44479748 -77364108 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 924 217 340 0 10 chr11 44480007 44480105 -77363751 + GA-rich Low_complexity Low_complexity 6 102 0 8 924 327 202 19 9 chr11 44480141 44480246 -77363610 + GA-rich Low_complexity Low_complexity 1 106 0 8 924 254 186 0 28 chr11 44480766 44480779 -77363077 + polypyrimidine Low_complexity Low_complexity 60 72 0 8 924 405 0 0 0 chr11 44480779 44480824 -77363032 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 8 924 1004 159 4 7 chr11 44480824 44481060 -77362796 + CT-rich Low_complexity Low_complexity 1 235 0 8 924 252 335 51 68 chr11 44481989 44482223 -77361633 - LTR16E1 LTR ERVL 0 538 309 8 924 970 274 18 53 chr11 44482281 44482562 -77361294 - B4A SINE B4 -20 272 2 8 924 286 278 10 82 chr11 44483692 44483790 -77360066 - MTE2a LTR MaLR -9 370 280 8 924 498 301 38 19 chr11 44484389 44484548 -77359308 + MER63A DNA AcHobo 4 165 -45 8 924 1305 83 0 0 chr11 44484775 44484955 -77358901 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 8 924 255 125 0 0 chr11 44484955 44484995 -77358861 + (TCTCC)n Simple_repeat Simple_repeat 2 41 0 8 924 763 159 0 13 chr11 44484994 44485136 -77358720 + CT-rich Low_complexity Low_complexity 13 153 0 8 924 1055 134 6 0 chr11 44485136 44485315 -77358541 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8 924 730 283 50 35 chr11 44485336 44485596 -77358260 - B4 SINE B4 -27 265 2 8 924 325 347 19 81 chr11 44487233 44487393 -77356463 + RSINE1 SINE B4 2 151 -14 8 924 483 339 62 23 chr11 44487450 44487710 -77356146 + B4A SINE B4 1 270 -22 8 924 192 158 0 0 chr11 44487738 44487776 -77356080 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 924 1127 76 0 0 chr11 44487887 44488032 -77355824 + B1_Mus2 SINE Alu 1 145 -2 8 924 450 0 0 0 chr11 44488033 44488083 -77355773 + (TAA)n Simple_repeat Simple_repeat 3 52 0 8 924 549 231 34 0 chr11 44488797 44488944 -77354912 - Tigger14a DNA MER2_type -159 165 14 8 924 225 154 0 0 chr11 44489325 44489364 -77354492 + (CTCA)n Simple_repeat Simple_repeat 3 41 0 8 924 576 0 0 0 chr11 44489827 44489891 -77353965 + (TC)n Simple_repeat Simple_repeat 2 65 0 8 924 231 36 0 0 chr11 44489891 44489918 -77353938 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 924 830 300 14 40 chr11 44489924 44490202 -77353654 - B4A SINE B4 -18 274 4 8 924 1278 113 17 0 chr11 44490519 44490696 -77353160 - B2_Mm2 SINE B2 -14 181 2 8 924 21 0 0 0 chr11 44491982 44492003 -77351853 + AT_rich Low_complexity Low_complexity 1 21 0 8 924 432 0 0 0 chr11 44494724 44494772 -77349084 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 924 294 87 0 0 chr11 44495896 44495942 -77347914 + (T)n Simple_repeat Simple_repeat 1 46 0 9 924 369 0 0 0 chr11 44496083 44496124 -77347732 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 924 202 61 0 57 chr11 44497093 44497128 -77346728 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 9 924 207 24 68 45 chr11 44498641 44498685 -77345171 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 9 924 495 0 0 0 chr11 44500695 44500750 -77343106 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 924 191 188 0 20 chr11 44500823 44500872 -77342984 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2 924 322 257 14 0 chr11 44501186 44501260 -77342596 + ORR1D1 LTR MaLR 9 83 -291 3 924 1106 184 85 57 chr11 44501308 44501590 -77342266 + ORR1D1 LTR MaLR 84 373 -1 3 924 257 279 62 25 chr11 44501714 44501795 -77342061 - PB1D10 SINE Alu 0 117 34 4 924 249 222 16 16 chr11 44502329 44502393 -77341463 + CT-rich Low_complexity Low_complexity 1 64 0 5 924 512 306 12 30 chr11 44502414 44502579 -77341277 - RSINE1 SINE B4 0 165 4 6 924 310 286 31 0 chr11 44502631 44502729 -77341127 - L2a LINE L2 0 3426 3326 7 924 549 279 98 21 chr11 44506850 44507044 -77336812 + ID_B1 SINE B4 8 216 -8 8 924 21 0 0 0 chr11 44508004 44508025 -77335831 + AT_rich Low_complexity Low_complexity 1 21 0 9 924 764 250 34 14 chr11 44508038 44508245 -77335611 - Lx9 LINE L1 -171 7473 7263 1 924 864 125 8 0 chr11 44508272 44508400 -77335456 + B3 SINE B2 1 129 -87 1 924 180 0 0 0 chr11 44508420 44508440 -77335416 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 924 270 0 0 0 chr11 44508452 44508482 -77335374 + (TAGA)n Simple_repeat Simple_repeat 2 31 0 1 924 701 110 9 0 chr11 44508970 44509079 -77334777 + B2_Mm2 SINE B2 2 111 -84 1 924 490 268 196 40 chr11 44509085 44509411 -77334445 + Lx8 LINE L1 7097 7473 0 1 924 183 162 27 0 chr11 44509615 44509652 -77334204 + MIRc SINE MIR 117 154 -114 1 924 22 56 0 0 chr11 44510055 44510091 -77333765 + AT_rich Low_complexity Low_complexity 1 36 0 1 924 378 0 0 0 chr11 44511338 44511380 -77332476 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 924 198 0 0 0 chr11 44512507 44512529 -77331327 + (T)n Simple_repeat Simple_repeat 1 22 0 1 924 272 229 43 0 chr11 44512686 44512756 -77331100 + B1F SINE Alu 71 143 -6 2 924 263 315 91 57 chr11 44514001 44514176 -77329680 + MIRb SINE MIR 22 202 -66 2 924 735 287 28 23 chr11 44514256 44514470 -77329386 + B3 SINE B2 2 216 0 2 924 282 298 168 16 chr11 44515807 44515998 -77327858 + MER33 DNA MER1_type 7 226 -98 2 924 384 283 18 36 chr11 44516185 44516295 -77327561 - PB1D10 SINE Alu -8 109 2 2 924 513 0 0 0 chr11 44517244 44517301 -77326555 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 2 924 581 255 7 7 chr11 44517450 44517592 -77326264 - B1F SINE Alu 0 149 8 2 924 459 276 6 79 chr11 44517451 44517628 -77326228 - ID_B1 SINE B4 0 224 61 2 924 419 357 113 17 chr11 44518193 44518538 -77325318 - MLT1J LTR MaLR -49 463 86 2 924 205 323 142 8 chr11 44519591 44519725 -77324131 + L2a LINE L2 3270 3421 -5 2 924 317 248 241 54 chr11 44519803 44519969 -77323887 - B3A SINE B2 0 198 2 3 924 1019 284 42 17 chr11 44520010 44520371 -77323485 - MLT1B LTR MaLR -10 380 11 3 924 548 184 9 37 chr11 44520396 44520503 -77323353 - B1_Mur3 SINE Alu -45 104 1 3 924 324 216 0 129 chr11 44520418 44520519 -77323337 - MT2B LTR ERVL -361 240 153 3 924 531 0 0 0 chr11 44520654 44520713 -77323143 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 924 380 169 0 13 chr11 44520765 44520843 -77323013 + T-rich Low_complexity Low_complexity 2 78 0 3 924 307 118 0 26 chr11 44521795 44521873 -77321983 + (TTTG)n Simple_repeat Simple_repeat 2 77 0 3 924 257 51 26 0 chr11 44522578 44522617 -77321239 + (CTTG)n Simple_repeat Simple_repeat 1 40 0 3 924 626 95 0 10 chr11 44522617 44522713 -77321143 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 3 924 653 231 0 43 chr11 44522741 44522881 -77320975 + B1_Mur1 SINE Alu 1 134 -15 3 924 267 321 27 27 chr11 44523561 44523673 -77320183 + MIR3 SINE MIR 48 159 -49 4 924 404 198 76 67 chr11 44523858 44523977 -77319879 + RSINE1 SINE B4 13 132 -33 4 924 212 208 19 0 chr11 44524190 44524243 -77319613 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 924 208 53 53 0 chr11 44524245 44524283 -77319573 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 4 924 579 265 7 19 chr11 44524488 44524642 -77319214 - RSINE1 SINE B4 -2 163 12 4 924 350 311 45 30 chr11 44524647 44524849 -77319007 - L1M5 LINE L1 -302 5822 5618 4 924 291 54 0 0 chr11 44525229 44525266 -77318590 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 924 750 23 0 0 chr11 44525780 44525868 -77317988 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 924 22 70 0 0 chr11 44527479 44527522 -77316334 + AT_rich Low_complexity Low_complexity 1 43 0 4 924 462 252 23 0 chr11 44528812 44529078 -77314778 + (TG)n Simple_repeat Simple_repeat 1 272 0 4 924 209 191 21 21 chr11 44530332 44530380 -77313476 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 924 224 350 62 0 chr11 44531265 44531362 -77312494 - MIRb SINE MIR -67 201 99 5 924 1051 294 52 45 chr11 44531435 44531972 -77311884 - Charlie1 DNA MER1_type 0 2781 2241 5 924 720 272 92 12 chr11 44532042 44532369 -77311487 - Charlie1 DNA MER1_type -638 2143 1791 5 924 322 250 127 60 chr11 44532453 44532619 -77311237 - Charlie1 DNA MER1_type -986 1795 1619 5 924 873 29 0 0 chr11 44533053 44533157 -77310699 + (TTC)n Simple_repeat Simple_repeat 3 106 0 5 924 703 281 27 33 chr11 44534221 44534405 -77309451 - B3A SINE B2 -15 183 1 5 924 21 0 0 0 chr11 44534461 44534482 -77309374 + AT_rich Low_complexity Low_complexity 1 21 0 5 924 197 317 162 11 chr11 44534682 44534867 -77308989 - L2a LINE L2 -76 3350 3138 5 924 322 159 47 0 chr11 44535067 44535174 -77308682 + (TA)n Simple_repeat Simple_repeat 2 113 0 5 924 785 228 35 6 chr11 44535188 44535360 -77308496 - B3 SINE B2 -37 179 3 5 924 252 281 47 0 chr11 44536482 44536546 -77307310 + ID4 SINE ID 8 74 -9 5 924 3498 28 2 0 chr11 44538463 44538858 -77304998 - MTA_Mm LTR MaLR 0 396 1 6 924 573 80 0 0 chr11 44539515 44539603 -77304253 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 924 25 0 0 0 chr11 44540837 44540862 -77302994 + AT_rich Low_complexity Low_complexity 1 25 0 6 924 214 347 118 0 chr11 44542357 44542527 -77301329 - MIRb SINE MIR -5 263 74 6 924 243 0 0 0 chr11 44542627 44542654 -77301202 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 924 1162 191 28 0 chr11 44544348 44544563 -77299293 - URR1B DNA MER1_type 0 225 5 6 924 428 301 53 0 chr11 44546144 44546277 -77297579 + B1F SINE Alu 1 140 -9 6 924 186 150 0 0 chr11 44546283 44546323 -77297533 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 6 924 841 225 115 0 chr11 44547295 44547486 -77296370 + B3 SINE B2 1 213 -3 6 924 183 340 137 11 chr11 44547565 44547660 -77296196 - MER5B DNA MER1_type 0 178 72 6 924 741 188 156 0 chr11 44548201 44548355 -77295501 + B3A SINE B2 3 180 -18 7 924 642 13 0 0 chr11 44549014 44549089 -77294767 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 924 395 81 0 0 chr11 44550659 44550721 -77293135 - B1_Mur4 SINE Alu 0 150 89 7 924 34 55 0 0 chr11 44551217 44551272 -77292584 + AT_rich Low_complexity Low_complexity 1 55 0 7 924 234 0 0 0 chr11 44552743 44552769 -77291087 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 924 333 0 0 0 chr11 44552836 44552873 -77290983 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 924 303 127 0 0 chr11 44553501 44553564 -77290292 + (A)n Simple_repeat Simple_repeat 1 63 0 7 924 215 289 0 0 chr11 44554103 44554155 -77289701 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 924 23 0 0 0 chr11 44554404 44554427 -77289429 + AT_rich Low_complexity Low_complexity 1 23 0 7 924 675 253 31 12 chr11 44555228 44555388 -77288468 - RSINE1 SINE B4 0 165 3 7 924 333 282 47 28 chr11 44555649 44555755 -77288101 + Lx8 LINE L1 7218 7325 -148 8 924 729 76 0 0 chr11 44555755 44555860 -77287996 + (GAAA)n Simple_repeat Simple_repeat 1 105 0 8 924 214 195 0 0 chr11 44555964 44556005 -77287851 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 924 477 0 0 0 chr11 44556012 44556065 -77287791 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 8 924 435 68 0 0 chr11 44556967 44557026 -77286830 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 924 206 312 0 0 chr11 44559951 44560015 -77283841 - L2 LINE L2 -509 2910 2847 8 924 687 57 0 0 chr11 44561412 44561500 -77282356 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 8 924 1366 88 0 35 chr11 44561609 44561810 -77282046 - B2_Mm2 SINE B2 0 195 2 8 924 796 271 68 5 chr11 44561987 44562209 -77281647 + B4A SINE B4 1 236 -56 8 924 582 51 0 0 chr11 44562276 44562354 -77281502 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 924 34 0 0 0 chr11 44563239 44563273 -77280583 + AT_rich Low_complexity Low_complexity 1 34 0 9 924 213 274 0 0 chr11 44563904 44563955 -77279901 + CT-rich Low_complexity Low_complexity 1 51 0 9 925 758 198 6 0 chr11 44565399 44565576 -77278280 + CT-rich Low_complexity Low_complexity 3 180 0 9 925 392 154 41 41 chr11 44566262 44566431 -77277425 + (TCTCTG)n Simple_repeat Simple_repeat 4 172 0 9 925 597 246 7 0 chr11 44566524 44566662 -77277194 + B1_Mur1 SINE Alu 2 140 -9 9 925 324 0 0 0 chr11 44567719 44567755 -77276101 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 925 677 291 82 5 chr11 44567882 44568089 -77275767 - ID_B1 SINE B4 0 224 2 9 925 268 301 57 89 chr11 44568663 44568787 -77275069 - ID_B1 SINE B4 -101 123 4 9 925 381 206 19 9 chr11 44569537 44569645 -77274211 + C-rich Low_complexity Low_complexity 4 112 0 9 925 257 265 24 24 chr11 44569659 44569744 -77274112 - B1F SINE Alu -60 89 5 9 925 246 62 0 0 chr11 44570727 44570759 -77273097 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 925 24 0 0 0 chr11 44571573 44571597 -77272259 + AT_rich Low_complexity Low_complexity 1 24 0 1 925 298 315 9 9 chr11 44571918 44572027 -77271829 - L1M5 LINE L1 -475 5649 5541 1 925 186 43 0 0 chr11 44572178 44572201 -77271655 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 925 33 73 0 0 chr11 44572247 44572315 -77271541 + AT_rich Low_complexity Low_complexity 1 68 0 1 925 22 80 0 0 chr11 44572883 44572933 -77270923 + AT_rich Low_complexity Low_complexity 1 50 0 1 925 462 283 47 20 chr11 44572957 44573105 -77270751 - RSINE1 SINE B4 -2 163 12 1 925 272 293 48 24 chr11 44573128 44573212 -77270644 - B1F SINE Alu -29 120 35 1 925 733 78 0 0 chr11 44573922 44574025 -77269831 + B1_Mus1 SINE Alu 39 141 -7 1 925 26 0 0 0 chr11 44574181 44574207 -77269649 + AT_rich Low_complexity Low_complexity 1 26 0 1 925 221 0 0 33 chr11 44574506 44574536 -77269320 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 925 252 259 24 12 chr11 44575423 44575505 -77268351 + CT-rich Low_complexity Low_complexity 2 84 0 1 925 189 0 0 0 chr11 44576941 44576962 -77266894 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 925 284 219 12 0 chr11 44576962 44577044 -77266812 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 925 442 279 0 48 chr11 44577046 44577212 -77266644 + (CATATA)n Simple_repeat Simple_repeat 3 160 0 1 925 214 271 0 0 chr11 44577814 44577862 -77265994 + MIRb SINE MIR 51 98 -170 1 925 211 329 12 12 chr11 44578924 44579010 -77264846 + CT-rich Low_complexity Low_complexity 4 89 0 1 925 323 295 0 11 chr11 44579102 44579191 -77264665 + RSINE1 SINE B4 53 140 -25 1 925 540 0 0 0 chr11 44579490 44579550 -77264306 + (TCC)n Simple_repeat Simple_repeat 1 60 0 1 925 537 58 0 0 chr11 44580101 44580170 -77263686 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 925 216 97 0 0 chr11 44581171 44581202 -77262654 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 925 180 0 0 0 chr11 44582745 44582765 -77261091 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 925 441 0 0 0 chr11 44583500 44583549 -77260307 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1 925 315 0 0 0 chr11 44583900 44583935 -77259921 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 925 721 312 65 11 chr11 44585249 44585524 -77258332 - B4A SINE B4 0 292 3 1 925 206 233 0 0 chr11 44585524 44585567 -77258289 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 1 925 518 312 29 11 chr11 44585567 44585742 -77258114 - ID_B1 SINE B4 0 224 47 1 925 224 213 0 0 chr11 44586747 44586794 -77257062 + CT-rich Low_complexity Low_complexity 2 48 0 1 925 455 189 21 17 chr11 44586797 44587035 -77256821 + (TCTG)n Simple_repeat Simple_repeat 1 238 0 1 925 267 333 8 40 chr11 44588242 44588367 -77255489 + MIR SINE MIR 9 129 -133 1 925 375 73 0 0 chr11 44589946 44590001 -77253855 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 925 360 339 59 47 chr11 44590001 44590255 -77253601 + MLT1A LTR MaLR 84 340 -34 1 925 506 16 16 0 chr11 44590414 44590477 -77253379 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1 925 458 239 124 0 chr11 44592121 44592234 -77251622 + B1_Mur1 SINE Alu 2 128 -21 1 925 252 271 29 0 chr11 44592550 44592620 -77251236 - ID4 SINE ID -6 77 6 1 925 414 0 0 0 chr11 44593020 44593066 -77250790 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 925 222 62 0 0 chr11 44593085 44593117 -77250739 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 925 355 231 10 52 chr11 44593140 44593236 -77250620 - RSINE1 SINE B4 -68 97 6 1 925 269 318 36 27 chr11 44593273 44593383 -77250473 - Lx7 LINE L1 -425 7271 7161 1 925 243 157 0 0 chr11 44593398 44593449 -77250407 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 925 327 49 0 0 chr11 44593479 44593520 -77250336 + (TGAG)n Simple_repeat Simple_repeat 1 41 0 1 925 184 324 128 27 chr11 44593608 44593757 -77250099 + MIR SINE MIR 18 181 -81 1 925 477 311 0 0 chr11 44595062 44595168 -77248688 + RSINE1 SINE B4 4 109 -56 1 925 336 24 0 0 chr11 44595169 44595210 -77248646 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 925 450 0 0 0 chr11 44596221 44596271 -77247585 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 925 361 299 34 0 chr11 44596280 44596397 -77247459 - L1M5 LINE L1 -311 5813 5693 1 925 188 114 45 0 chr11 44596648 44596692 -77247164 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 1 925 414 100 0 0 chr11 44596716 44596776 -77247080 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 925 731 267 50 0 chr11 44599358 44599560 -77244296 + ID_B1 SINE B4 11 222 -2 1 925 567 188 0 0 chr11 44600101 44600213 -77243643 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 925 396 0 0 0 chr11 44600317 44600361 -77243495 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 925 421 298 81 0 chr11 44600820 44600944 -77242912 + RSINE1 SINE B4 2 135 -30 1 925 456 51 0 0 chr11 44600952 44601011 -77242845 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 925 342 98 0 0 chr11 44601105 44601156 -77242700 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 925 250 326 113 82 chr11 44601161 44601234 -77242622 - B4 SINE B4 -27 265 1 1 925 608 291 33 11 chr11 44601234 44601418 -77242438 - B3A SINE B2 -10 188 1 1 925 353 245 0 78 chr11 44601504 44601606 -77242250 - B4 SINE B4 -188 104 11 1 925 26 0 0 0 chr11 44602840 44602866 -77240990 + AT_rich Low_complexity Low_complexity 1 26 0 1 925 714 301 29 14 chr11 44603006 44603215 -77240641 - B3A SINE B2 -2 214 3 1 925 384 22 0 0 chr11 44603463 44603508 -77240348 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 925 213 308 0 49 chr11 44604144 44604226 -77239630 + ID2 SINE ID 1 78 -5 1 925 420 20 0 0 chr11 44604308 44604357 -77239499 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 925 479 291 139 29 chr11 44604472 44604716 -77239140 + B4A SINE B4 1 271 -21 1 925 519 45 0 0 chr11 44604746 44604812 -77239044 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 925 253 0 54 0 chr11 44605834 44605871 -77237985 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 925 252 0 0 0 chr11 44605902 44605930 -77237926 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 925 396 103 0 0 chr11 44607782 44607840 -77236016 + (A)n Simple_repeat Simple_repeat 1 58 0 1 925 559 291 57 0 chr11 44609353 44609528 -77234328 - ID_B1 SINE B4 -38 186 2 1 925 21 0 0 0 chr11 44612363 44612384 -77231472 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 330 26 0 0 chr11 44612968 44613007 -77230849 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 925 641 283 46 0 chr11 44615940 44616092 -77227764 + RSINE1 SINE B4 3 161 -4 1 925 468 0 0 0 chr11 44616095 44616147 -77227709 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 925 224 311 44 11 chr11 44616405 44616496 -77227360 - MER5A DNA MER1_type -21 168 75 1 925 354 23 0 0 chr11 44616806 44616849 -77227007 + (CAA)n Simple_repeat Simple_repeat 3 45 0 1 925 666 274 99 28 chr11 44618328 44618580 -77225276 + B4A SINE B4 2 271 -21 1 925 631 264 0 59 chr11 44619345 44619514 -77224342 + RSINE1 SINE B4 2 160 -5 1 925 441 36 0 0 chr11 44619888 44619943 -77223913 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 925 396 59 0 0 chr11 44619943 44619994 -77223862 + (CCA)n Simple_repeat Simple_repeat 3 53 0 1 925 251 114 23 0 chr11 44620760 44620804 -77223052 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 925 427 212 23 34 chr11 44620953 44621129 -77222727 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 1 925 1352 146 18 5 chr11 44621645 44621866 -77221990 - URR1B DNA MER1_type 0 225 2 1 925 410 0 0 20 chr11 44621902 44621953 -77221903 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 925 212 0 36 0 chr11 44622701 44622729 -77221127 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 925 373 81 32 0 chr11 44623083 44623145 -77220711 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 1 925 357 18 5 155 chr11 44623817 44624017 -77219839 + (TACTG)n Simple_repeat Simple_repeat 4 173 0 1 925 207 318 0 0 chr11 44624035 44624120 -77219736 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 925 747 62 0 0 chr11 44624123 44624220 -77219636 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 1 925 368 305 73 6 chr11 44624681 44624846 -77219010 - MER102b DNA MER1_type -70 271 96 1 925 306 262 25 0 chr11 44626293 44626373 -77217483 + ID4 SINE ID 2 83 0 1 925 998 240 22 18 chr11 44626411 44626635 -77217221 + B4 SINE B4 3 227 -65 1 925 257 226 0 0 chr11 44626635 44626688 -77217168 + B3A SINE B2 1 53 -145 1 925 531 0 0 0 chr11 44626691 44626750 -77217106 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 925 309 280 39 12 chr11 44627133 44627274 -77216582 - L2a LINE L2 -60 3366 3239 1 925 396 0 0 0 chr11 44629085 44629129 -77214727 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 925 569 273 145 34 chr11 44631052 44631314 -77212542 - B4 SINE B4 -1 291 1 1 925 276 196 87 17 chr11 44631623 44631704 -77212152 + MIR SINE MIR 43 127 -141 1 925 21 0 0 0 chr11 44631751 44631772 -77212084 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 200 222 22 0 chr11 44635114 44635159 -77208697 + CT-rich Low_complexity Low_complexity 3 48 0 1 925 183 80 0 0 chr11 44635167 44635192 -77208664 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 925 198 0 0 0 chr11 44635199 44635221 -77208635 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 925 351 233 248 8 chr11 44635230 44635347 -77208509 - RSINE1 SINE B4 -16 149 5 2 925 23 33 0 0 chr11 44635809 44635839 -77208017 + AT_rich Low_complexity Low_complexity 1 30 0 2 925 455 82 14 0 chr11 44636071 44636144 -77207712 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 925 528 30 0 0 chr11 44636158 44636224 -77207632 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2 925 282 319 67 38 chr11 44638083 44638243 -77205613 + B3A SINE B2 6 172 -26 2 925 330 26 0 0 chr11 44639240 44639279 -77204577 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 925 423 0 0 0 chr11 44639279 44639325 -77204531 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 925 378 132 0 0 chr11 44640479 44640555 -77203301 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 925 293 253 0 65 chr11 44640760 44640853 -77203003 + B4A SINE B4 188 274 -18 2 925 195 42 0 0 chr11 44640853 44640877 -77202979 + (A)n Simple_repeat Simple_repeat 1 24 0 2 925 219 230 65 54 chr11 44641770 44641862 -77201994 + MIRc SINE MIR 15 107 -161 2 925 470 318 38 55 chr11 44642563 44642746 -77201110 - B3A SINE B2 -4 194 15 2 925 309 26 0 0 chr11 44642926 44642964 -77200892 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 925 261 274 0 0 chr11 44642964 44643015 -77200841 - ID4 SINE ID -10 73 23 2 925 241 326 0 0 chr11 44643216 44643305 -77200551 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 925 248 286 0 0 chr11 44643409 44643472 -77200384 + L2a LINE L2 3357 3419 -7 2 925 200 359 110 8 chr11 44644119 44644262 -77199594 + MIRm SINE MIR 31 190 -78 2 925 519 17 0 0 chr11 44648566 44648626 -77195230 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 925 276 30 0 0 chr11 44649367 44649400 -77194456 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2 925 271 279 32 28 chr11 44649918 44650030 -77193826 + MIRb SINE MIR 92 211 -57 2 925 243 323 0 0 chr11 44650217 44650282 -77193574 + MIR3 SINE MIR 123 187 -21 2 925 396 0 0 0 chr11 44651204 44651248 -77192608 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 925 367 316 51 7 chr11 44652464 44652601 -77191255 - ID_B1 SINE B4 -80 144 2 2 925 373 325 0 33 chr11 44653961 44654082 -77189774 + B4A SINE B4 2 118 -174 2 925 1014 32 0 0 chr11 44654129 44654255 -77189601 + (CA)n Simple_repeat Simple_repeat 2 127 0 2 925 668 35 0 11 chr11 44655553 44655641 -77188215 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 925 201 74 0 0 chr11 44655642 44655669 -77188187 + (TTTCC)n Simple_repeat Simple_repeat 2 28 0 2 925 495 302 0 69 chr11 44656473 44656633 -77187223 - RSINE1 SINE B4 -10 155 7 2 925 189 223 32 0 chr11 44656970 44657064 -77186792 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 925 198 103 0 0 chr11 44657100 44657129 -77186727 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 2 925 1136 88 0 0 chr11 44657131 44657278 -77186578 - B1_Mus2 SINE Alu 0 147 1 2 925 715 300 71 21 chr11 44657280 44657518 -77186338 - B4A SINE B4 -41 251 2 2 925 284 246 0 0 chr11 44657998 44658067 -77185789 + G-rich Low_complexity Low_complexity 1 69 0 2 925 585 273 12 36 chr11 44658557 44658724 -77185132 - RSINE1 SINE B4 0 165 3 2 925 480 89 12 12 chr11 44659750 44659830 -77184026 + RLTR11A2 LTR ERVK 448 527 0 2 925 235 296 94 24 chr11 44660135 44660305 -77183551 - MIRb SINE MIR -67 201 9 2 925 273 322 8 8 chr11 44662230 44662349 -77181507 + L1M5 LINE L1 5619 5737 -387 2 925 25 0 0 0 chr11 44663204 44663229 -77180627 + AT_rich Low_complexity Low_complexity 1 25 0 2 925 213 121 0 0 chr11 44663363 44663396 -77180460 + (T)n Simple_repeat Simple_repeat 1 33 0 2 925 217 222 19 0 chr11 44664267 44664321 -77179535 + B1F SINE Alu 90 144 -5 2 925 243 222 22 110 chr11 44664332 44664423 -77179433 + ID4_ SINE ID 1 83 0 2 925 235 333 0 0 chr11 44664469 44664547 -77179309 + MIRb SINE MIR 172 249 -19 2 925 839 302 34 41 chr11 44665898 44666191 -77177665 + B4A SINE B4 2 292 0 2 925 211 208 38 0 chr11 44666240 44666293 -77177563 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 925 360 64 0 0 chr11 44666366 44666413 -77177443 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 925 246 275 40 67 chr11 44667883 44667995 -77175861 + MIR SINE MIR 47 154 -54 2 925 456 224 0 0 chr11 44668619 44668704 -77175152 - B4A SINE B4 -206 86 2 2 925 303 28 0 0 chr11 44668956 44668992 -77174864 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2 925 525 32 0 0 chr11 44669743 44669806 -77174050 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2 925 9120 8 1 0 chr11 44670384 44671696 -77172160 - L1Md_T LINE L1 0 6582 5270 2 925 349 113 0 0 chr11 44671826 44671879 -77171977 + PB1D9 SINE Alu 11 63 -57 2 925 270 0 0 0 chr11 44672887 44672917 -77170939 + (TAA)n Simple_repeat Simple_repeat 3 32 0 2 925 1149 52 0 0 chr11 44675488 44675623 -77168233 + B1_Mus2 SINE Alu 1 135 -12 2 925 226 0 0 56 chr11 44675624 44675660 -77168196 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 925 327 235 0 24 chr11 44678064 44678147 -77165709 - MIR SINE MIR -116 146 66 2 925 541 308 11 63 chr11 44678944 44679214 -77164642 + B4A SINE B4 2 257 -35 2 925 202 56 56 0 chr11 44679259 44679295 -77164561 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 925 200 118 29 0 chr11 44681910 44681944 -77161912 + (CAA)n Simple_repeat Simple_repeat 3 37 0 2 925 249 108 0 0 chr11 44682739 44682776 -77161080 + (T)n Simple_repeat Simple_repeat 1 37 0 2 925 385 264 122 0 chr11 44683347 44683495 -77160361 - MER5A1 DNA MER1_type 0 166 1 2 925 441 0 0 0 chr11 44684439 44684488 -77159368 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 925 230 0 33 0 chr11 44684488 44684517 -77159339 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 925 198 103 0 0 chr11 44685314 44685343 -77158513 + (ATG)n Simple_repeat Simple_repeat 1 29 0 2 925 266 311 45 51 chr11 44685352 44685508 -77158348 - MIRb SINE MIR -4 264 110 2 925 226 348 42 25 chr11 44687456 44687574 -77156282 - MLT1J1 LTR MaLR -227 217 98 2 925 348 24 0 0 chr11 44688077 44688118 -77155738 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 925 315 0 0 0 chr11 44689204 44689239 -77154617 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 925 434 245 208 7 chr11 44690429 44690573 -77153283 - B3A SINE B2 -25 173 1 2 925 1969 181 34 24 chr11 44690874 44691292 -77152564 - L1MC2 LINE L1 -188 6156 5735 2 925 505 359 31 21 chr11 44691320 44691645 -77152211 - L1MD2 LINE L1 -24 6335 6008 2 925 444 260 75 7 chr11 44691648 44691795 -77152061 - MLT1B LTR MaLR -206 184 28 2 925 257 226 95 0 chr11 44691865 44691949 -77151907 - L1MD2 LINE L1 -358 5884 5793 2 925 521 264 61 61 chr11 44692016 44692294 -77151562 + B4A SINE B4 2 279 -13 2 925 22 0 0 0 chr11 44692349 44692371 -77151485 + AT_rich Low_complexity Low_complexity 1 22 0 2 925 438 20 0 0 chr11 44693864 44693915 -77149941 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 925 271 273 240 0 chr11 44694017 44694167 -77149689 + MER3 DNA MER1_type 2 187 -22 2 925 216 0 0 0 chr11 44695210 44695234 -77148622 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2 926 1095 29 80 0 chr11 44695663 44695800 -77148056 + B1_Mus1 SINE Alu 1 148 0 2 926 576 0 0 0 chr11 44696963 44697027 -77146829 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 926 702 0 0 0 chr11 44697717 44697795 -77146061 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 926 913 289 45 4 chr11 44699077 44699334 -77144522 + B4 SINE B4 2 269 -23 2 926 198 0 0 0 chr11 44699334 44699356 -77144500 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 926 185 343 48 55 chr11 44699495 44699640 -77144216 + MIR3 SINE MIR 4 147 -61 2 926 632 111 0 9 chr11 44701577 44701686 -77142170 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 926 211 72 23 23 chr11 44701873 44701916 -77141940 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 926 233 312 43 68 chr11 44703896 44704013 -77139843 - MIRb SINE MIR -128 140 21 2 926 351 0 0 0 chr11 44704127 44704166 -77139690 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 926 546 29 0 0 chr11 44704166 44704233 -77139623 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 926 270 0 0 0 chr11 44704233 44704263 -77139593 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 926 399 288 123 0 chr11 44704284 44704430 -77139426 - B3A SINE B2 -30 168 5 2 926 714 245 25 25 chr11 44705129 44705326 -77138530 - B3A SINE B2 -1 197 1 2 926 277 299 45 11 chr11 44705590 44705678 -77138178 + B4A SINE B4 165 255 -37 2 926 282 326 30 10 chr11 44705742 44705841 -77138015 - PB1D10 SINE Alu -16 101 1 2 926 297 314 34 64 chr11 44705846 44706050 -77137806 + MER113A DNA MER1_type 80 277 -37 2 926 206 77 25 25 chr11 44706173 44706213 -77137643 + (TTTTTG)n Simple_repeat Simple_repeat 5 44 0 2 926 379 234 202 0 chr11 44706934 44707058 -77136798 - B1F SINE Alu 0 149 1 2 926 258 207 0 0 chr11 44710029 44710087 -77133769 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 926 333 0 0 0 chr11 44712221 44712258 -77131598 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 926 363 44 0 0 chr11 44713101 44713146 -77130710 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 926 360 0 0 0 chr11 44715055 44715095 -77128761 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 926 461 17 17 0 chr11 44715095 44715152 -77128704 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 926 427 296 0 18 chr11 44715844 44715954 -77127902 + RSINE1 SINE B4 4 111 -54 3 926 258 32 0 0 chr11 44716026 44716057 -77127799 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 926 396 104 0 0 chr11 44718873 44718940 -77124916 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 926 198 103 0 0 chr11 44724864 44724893 -77118963 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 3 926 261 0 0 0 chr11 44725007 44725036 -77118820 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 926 1296 70 0 0 chr11 44726149 44726321 -77117535 + (TTCTC)n Simple_repeat Simple_repeat 2 173 0 3 926 468 0 0 0 chr11 44726452 44726504 -77117352 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 926 1284 89 0 0 chr11 44727717 44727897 -77115959 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 926 507 286 88 29 chr11 44727964 44728202 -77115654 - Lx8 LINE L1 -38 7435 7184 3 926 248 331 13 73 chr11 44730078 44730228 -77113628 + Tigger15a DNA TcMar 459 599 -116 3 926 28 0 0 0 chr11 44731113 44731141 -77112715 + AT_rich Low_complexity Low_complexity 1 28 0 3 926 364 202 25 0 chr11 44731192 44731271 -77112585 - ID4 SINE ID 0 83 3 3 926 187 380 21 11 chr11 44731404 44731497 -77112359 - L2b LINE L2 -42 3333 3240 3 926 356 175 9 0 chr11 44731787 44731903 -77111953 + CT-rich Low_complexity Low_complexity 1 117 0 3 926 252 0 0 0 chr11 44732084 44732112 -77111744 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 926 565 258 0 16 chr11 44732112 44732238 -77111618 - RSINE1 SINE B4 -41 124 1 3 926 23 33 0 0 chr11 44732501 44732531 -77111325 + AT_rich Low_complexity Low_complexity 1 30 0 3 926 1076 29 0 0 chr11 44732813 44732978 -77110878 - L1Md_A LINE L1 0 6582 6447 3 926 204 174 0 0 chr11 44732978 44732994 -77110862 + T-rich Low_complexity Low_complexity 2 17 0 3 926 332 43 22 0 chr11 44733060 44733106 -77110750 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 926 360 0 0 0 chr11 44733947 44733987 -77109869 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 926 440 288 128 24 chr11 44734634 44734798 -77109058 - B3A SINE B2 -16 182 2 3 926 902 231 33 42 chr11 44735136 44735348 -77108508 - B3 SINE B2 0 216 7 3 926 235 308 79 65 chr11 44735711 44735940 -77107916 + Tigger15a DNA TcMar 363 594 -121 3 926 879 238 106 51 chr11 44735968 44736260 -77107596 - Lx8 LINE L1 -2 7471 7164 3 926 761 286 78 19 chr11 44736245 44736502 -77107354 - Lx8 LINE L1 -488 6985 6714 3 926 231 159 45 0 chr11 44739142 44739186 -77104670 + (CAGA)n Simple_repeat Simple_repeat 4 49 0 3 926 318 115 0 0 chr11 44739660 44739712 -77104144 + (T)n Simple_repeat Simple_repeat 1 52 0 3 926 230 116 23 0 chr11 44739947 44739990 -77103866 + (GAA)n Simple_repeat Simple_repeat 2 45 0 3 926 376 72 29 0 chr11 44740223 44740292 -77103564 + (CAAA)n Simple_repeat Simple_repeat 1 71 0 3 926 185 132 26 0 chr11 44742267 44742305 -77101551 + C-rich Low_complexity Low_complexity 4 42 0 3 926 857 234 10 0 chr11 44742610 44742802 -77101054 - B3 SINE B2 -7 209 16 3 926 339 271 41 36 chr11 44743017 44743176 -77100680 - MLT1A1 LTR MaLR -4 404 203 3 926 342 0 0 0 chr11 44745921 44745959 -77097897 + (CTTG)n Simple_repeat Simple_repeat 4 41 0 3 926 23 0 0 0 chr11 44747125 44747148 -77096708 + AT_rich Low_complexity Low_complexity 1 23 0 3 926 282 254 0 0 chr11 44748921 44748992 -77094864 - L1M5 LINE L1 -303 5821 5751 3 926 21 0 0 0 chr11 44749263 44749284 -77094572 + AT_rich Low_complexity Low_complexity 1 21 0 3 926 342 267 22 0 chr11 44749333 44749423 -77094433 + PB1D10 SINE Alu 13 104 -13 3 926 665 24 0 12 chr11 44749423 44749507 -77094349 + (GAA)n Simple_repeat Simple_repeat 2 84 0 3 926 408 191 0 0 chr11 44749607 44749691 -77094165 + GA-rich Low_complexity Low_complexity 2 85 0 3 926 969 9 0 0 chr11 44749693 44749803 -77094053 + (GAGAA)n Simple_repeat Simple_repeat 5 114 0 3 926 225 281 54 33 chr11 44749856 44749948 -77093908 - Kanga2_a DNA Tc2 -363 525 432 3 926 236 231 0 0 chr11 44750017 44750069 -77093787 + ID4_ SINE ID 3 54 -29 3 926 1257 62 0 0 chr11 44750830 44751057 -77092799 + (CA)n Simple_repeat Simple_repeat 1 227 0 3 926 286 328 88 0 chr11 44751729 44751854 -77092002 + L2a LINE L2 3290 3425 -1 3 926 472 343 87 73 chr11 44752169 44752581 -77091275 + Lx8 LINE L1 7055 7472 -1 3 926 36 0 0 0 chr11 44755142 44755178 -77088678 + AT_rich Low_complexity Low_complexity 1 36 0 3 926 405 0 0 0 chr11 44755732 44755777 -77088079 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 3 926 371 252 66 126 chr11 44758268 44758450 -77085406 + Lx8 LINE L1 7207 7377 -96 3 926 344 367 52 14 chr11 44758802 44759015 -77084841 - MIR SINE MIR -22 240 20 3 926 267 122 0 0 chr11 44759068 44759117 -77084739 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 3 926 375 23 0 0 chr11 44759829 44759873 -77083983 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 3 926 359 193 11 0 chr11 44762947 44763035 -77080821 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 926 207 0 0 0 chr11 44764380 44764403 -77079453 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 926 198 0 0 0 chr11 44764411 44764433 -77079423 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 926 563 221 15 1 chr11 44764437 44764566 -77079290 - B1_Mur2 SINE Alu 0 149 12 3 926 233 98 24 0 chr11 44767850 44767891 -77075965 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 3 926 324 0 0 0 chr11 44768560 44768596 -77075260 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 926 338 242 113 38 chr11 44769259 44769384 -77074472 + B1F1 SINE Alu 1 138 -11 3 926 243 0 0 0 chr11 44769384 44769411 -77074445 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 926 1639 194 75 11 chr11 44769761 44770137 -77073719 - MTD LTR MaLR 0 419 20 3 926 189 0 0 0 chr11 44770847 44770868 -77072988 + (CTG)n Simple_repeat Simple_repeat 2 22 0 3 926 215 239 15 0 chr11 44770936 44771003 -77072853 + CT-rich Low_complexity Low_complexity 2 69 0 3 926 309 344 23 0 chr11 44771034 44771162 -77072694 - B1F1 SINE Alu -18 131 1 3 926 771 32 0 0 chr11 44771695 44771789 -77072067 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 926 232 349 20 14 chr11 44773365 44773513 -77070343 + L2 LINE L2 2317 2465 -954 3 926 776 263 19 0 chr11 44774516 44774721 -77069135 - B3 SINE B2 0 216 8 3 926 205 321 71 12 chr11 44775146 44775231 -77068625 - MIRb SINE MIR -141 127 38 3 926 429 316 52 6 chr11 44775465 44775637 -77068219 + MIR SINE MIR 33 212 -50 3 926 444 340 62 19 chr11 44775831 44776041 -77067815 + MER119 DNA MER1_type 50 268 -315 3 926 226 337 11 11 chr11 44776264 44776351 -77067505 + MER119 DNA MER1_type 497 583 0 3 926 566 231 134 175 chr11 44778134 44778506 -77065350 + MTE2a LTR MaLR 14 370 -9 3 926 639 39 0 0 chr11 44781367 44781445 -77062411 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 3 926 1216 171 18 18 chr11 44781706 44781932 -77061924 - URR1A DNA MER1_type 0 226 1 3 926 247 53 77 123 chr11 44783024 44783089 -77060767 - L1ME4a LINE L1 -2 6122 6061 3 926 207 69 0 0 chr11 44783208 44783237 -77060619 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 3 926 512 324 11 39 chr11 44783254 44783434 -77060422 + B3 SINE B2 3 177 -39 3 926 312 259 69 69 chr11 44786632 44786777 -77057079 - MIR SINE MIR -38 224 80 3 926 262 336 26 45 chr11 44788160 44788316 -77055540 + MIR SINE MIR 12 164 -98 3 926 218 167 0 0 chr11 44788429 44788465 -77055391 + MIR SINE MIR 113 148 -114 3 926 414 0 0 0 chr11 44789738 44789784 -77054072 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 926 221 205 190 13 chr11 44790048 44790127 -77053729 + MIRb SINE MIR 119 211 -57 3 926 477 294 173 14 chr11 44793263 44793477 -77050379 + B4A SINE B4 2 249 -43 3 926 333 0 0 0 chr11 44794294 44794331 -77049525 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 926 453 36 0 0 chr11 44794690 44794745 -77049111 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 926 496 322 34 45 chr11 44794789 44794968 -77048888 - B3A SINE B2 -16 182 6 3 926 873 293 5 0 chr11 44795022 44795237 -77048619 - ID_B1 SINE B4 -7 217 2 3 926 432 0 0 0 chr11 44795596 44795644 -77048212 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 926 341 272 12 0 chr11 44795677 44795758 -77048098 - MamRep137 DNA TcMar? -346 98 17 3 926 453 298 107 0 chr11 44796904 44797025 -77046831 + B3A SINE B2 1 134 -64 3 926 324 48 0 0 chr11 44797025 44797067 -77046789 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 926 327 49 0 0 chr11 44797067 44797107 -77046749 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 926 461 184 9 0 chr11 44797231 44797345 -77046511 + (TATG)n Simple_repeat Simple_repeat 4 118 0 3 926 781 254 42 106 chr11 44797346 44797658 -77046198 - B4A SINE B4 0 292 1 3 926 357 350 44 16 chr11 44799732 44799915 -77043941 + MIR SINE MIR 7 194 -68 3 926 567 0 0 0 chr11 44805190 44805253 -77038603 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 926 366 23 0 0 chr11 44806555 44806598 -77037258 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 926 333 0 0 0 chr11 44806598 44806634 -77037222 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 926 22 0 0 0 chr11 44807634 44807656 -77036200 + AT_rich Low_complexity Low_complexity 1 22 0 3 926 327 104 0 0 chr11 44810681 44810729 -77033127 + (T)n Simple_repeat Simple_repeat 1 48 0 3 926 1170 62 0 14 chr11 44810730 44810878 -77032978 - B1_Mm SINE Alu -1 146 1 3 926 267 313 10 12 chr11 44810878 44810987 -77032869 - MIRb SINE MIR -8 260 150 3 926 1547 147 62 0 chr11 44811550 44811696 -77032160 + Lx2 LINE L1 6721 6866 -131 4 926 189 0 0 0 chr11 44811696 44811717 -77032139 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 4 926 1547 147 62 0 chr11 44811717 44811829 -77032027 + Lx2 LINE L1 6867 6993 -4 4 926 2390 174 0 54 chr11 44812078 44812521 -77031335 - MTC LTR MaLR -2 419 1 4 926 245 339 37 24 chr11 44813495 44813622 -77030234 - MIRc SINE MIR -91 171 46 3 926 477 277 176 10 chr11 44813953 44814259 -77029597 - L1MA4 LINE L1 -104 6196 5840 4 926 354 108 40 0 chr11 44814780 44814854 -77029002 + (TCTCCC)n Simple_repeat Simple_repeat 2 78 0 4 926 21 0 0 0 chr11 44815882 44815903 -77027953 + AT_rich Low_complexity Low_complexity 1 21 0 4 926 418 0 17 34 chr11 44816093 44816152 -77027704 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 4 926 1084 226 21 86 chr11 44816418 44816757 -77027099 - MER121 Unknown Unknown -25 387 71 4 926 257 246 0 0 chr11 44818672 44818737 -77025119 + A-rich Low_complexity Low_complexity 1 65 0 4 926 267 54 0 0 chr11 44819016 44819053 -77024803 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 4 926 231 167 0 0 chr11 44820511 44820553 -77023303 + A-rich Low_complexity Low_complexity 1 42 0 4 926 218 125 0 20 chr11 44820704 44820753 -77023103 + (GGGGA)n Simple_repeat Simple_repeat 1 48 0 4 926 266 106 0 21 chr11 44820779 44820827 -77023029 + (TAA)n Simple_repeat Simple_repeat 2 48 0 4 926 221 163 20 0 chr11 44821475 44821524 -77022332 + T-rich Low_complexity Low_complexity 4 53 0 4 926 741 23 0 0 chr11 44822070 44822157 -77021699 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 926 342 67 0 0 chr11 44822822 44822867 -77020989 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 4 926 182 403 0 25 chr11 44823060 44823139 -77020717 - L2b LINE L2 -199 3176 3100 4 926 293 223 9 97 chr11 44823448 44823562 -77020294 + GA-rich Low_complexity Low_complexity 2 105 0 4 926 664 250 74 32 chr11 44823791 44823981 -77019875 + B3 SINE B2 3 200 -16 4 926 331 217 0 14 chr11 44824878 44824948 -77018908 - ID4_ SINE ID -9 74 6 4 926 328 276 86 65 chr11 44825531 44825717 -77018139 + RMER30 DNA MER1_type 6 195 -7 4 115 266 273 34 102 chr11 44826581 44826728 -77017128 + Lx7 LINE L1 7534 7670 -26 4 927 519 17 0 0 chr11 44826730 44826790 -77017066 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 927 441 66 0 0 chr11 44826809 44826870 -77016986 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 927 5292 201 56 12 chr11 44826878 44827933 -77015923 - Lx9 LINE L1 -237 7407 6307 4 927 1908 205 10 27 chr11 44828154 44828560 -77015296 - L1_Rod LINE L1 -1514 4333 3935 4 927 760 195 69 57 chr11 44828537 44828782 -77015074 - L1_Rod LINE L1 -2240 3607 3360 4 927 2488 252 57 15 chr11 44828765 44829433 -77014423 - L1_Rod LINE L1 -6393 1215 520 4 927 255 61 0 0 chr11 44829751 44829784 -77014072 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 927 387 0 0 0 chr11 44830902 44830945 -77012911 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 927 4217 136 23 12 chr11 44830945 44831680 -77012176 - RMER6A LTR ERVK -1 755 13 4 927 212 189 0 0 chr11 44831684 44831721 -77012135 + (TATG)n Simple_repeat Simple_repeat 1 37 0 4 927 730 222 107 10 chr11 44832515 44832711 -77011145 - B3 SINE B2 0 216 2 4 927 799 296 82 8 chr11 44832903 44833148 -77010708 + B4 SINE B4 1 263 -29 4 927 426 121 0 0 chr11 44833240 44833306 -77010550 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 4 927 317 308 12 59 chr11 44833341 44833510 -77010346 + Lx8 LINE L1 6664 6824 -649 4 927 231 402 31 49 chr11 44834030 44834255 -77009601 - L2b LINE L2 -50 3325 3105 4 927 225 65 0 0 chr11 44834471 44834502 -77009354 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 927 209 33 0 32 chr11 44834531 44834562 -77009294 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 927 376 191 89 6 chr11 44835877 44836035 -77007821 + (TCTA)n Simple_repeat Simple_repeat 3 173 0 4 927 237 246 25 0 chr11 44836130 44836248 -77007608 + (TCTA)n Simple_repeat Simple_repeat 1 121 0 4 927 24 32 0 0 chr11 44836310 44836341 -77007515 + AT_rich Low_complexity Low_complexity 1 31 0 4 927 224 122 0 24 chr11 44836953 44836995 -77006861 + (TTCTCC)n Simple_repeat Simple_repeat 2 42 0 4 927 207 0 0 0 chr11 44837973 44837996 -77005860 + (A)n Simple_repeat Simple_repeat 1 23 0 4 927 823 290 40 54 chr11 44839007 44839284 -77004572 - B4A SINE B4 -11 281 9 4 927 200 111 0 27 chr11 44840115 44840152 -77003704 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 4 927 407 353 70 16 chr11 44841301 44841557 -77002299 + Tigger14a DNA MER2_type 55 324 0 4 927 228 67 0 0 chr11 44842268 44842298 -77001558 + (CATATA)n Simple_repeat Simple_repeat 4 33 0 4 927 718 235 65 7 chr11 44842430 44842584 -77001272 + B3A SINE B2 1 163 -35 4 927 495 48 0 0 chr11 44842590 44842652 -77001204 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 927 483 18 0 0 chr11 44842978 44843034 -77000822 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 4 927 665 289 139 3 chr11 44843046 44843334 -77000522 + L1MA6 LINE L1 3512 3838 -2305 4 927 733 293 11 8 chr11 44843327 44843595 -77000261 + L1MA6 LINE L1 5683 5951 -349 4 927 999 279 23 86 chr11 44843596 44843898 -76999958 + B4A SINE B4 2 284 -8 4 927 1917 116 29 47 chr11 44844141 44844609 -76999247 - ORR1A2 LTR MaLR -8 386 1 4 927 404 106 0 29 chr11 44844609 44844677 -76999179 - ORR1A2-int LTR MaLR -262 1701 1636 4 927 3983 176 87 17 chr11 44844674 44845550 -76998306 - ORR1A2-int LTR MaLR -1025 938 2 4 927 2329 60 12 60 chr11 44845555 44845890 -76997966 - ORR1A2 LTR MaLR -8 319 1 4 927 251 290 183 0 chr11 44846632 44846725 -76997131 - RSINE1 SINE B4 -52 113 4 4 927 22 0 0 0 chr11 44849829 44849851 -76994005 + AT_rich Low_complexity Low_complexity 1 22 0 4 927 554 331 30 6 chr11 44850178 44850342 -76993514 + B3A SINE B2 1 168 -30 4 927 3190 42 76 0 chr11 44851093 44851473 -76992383 + L1_Mus1 LINE L1 6159 6567 0 4 927 299 305 160 0 chr11 44851527 44851795 -76992061 - L1M4b LINE L1 -4586 2422 2094 4 927 933 271 9 14 chr11 44851798 44852015 -76991841 - B3 SINE B2 0 216 1 4 927 947 134 6 0 chr11 44852024 44852203 -76991653 + (CCTCG)n Simple_repeat Simple_repeat 1 180 0 4 927 492 162 18 61 chr11 44852203 44852367 -76991489 + C-rich Low_complexity Low_complexity 3 159 0 4 927 406 196 10 10 chr11 44852342 44852445 -76991411 + CT-rich Low_complexity Low_complexity 3 105 0 4 927 450 0 0 0 chr11 44852461 44852511 -76991345 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 927 491 309 14 21 chr11 44852528 44852670 -76991186 - RSINE1 SINE B4 -22 143 3 4 927 357 262 54 42 chr11 44852686 44852853 -76991003 - L1M4b LINE L1 -5240 2094 1926 4 927 236 329 44 62 chr11 44853123 44853191 -76990665 - L1M4 LINE L1 -4628 1937 1878 4 927 2303 191 61 65 chr11 44853191 44853746 -76990110 + RLTR31_Mur LTR ERVK 1 553 0 4 927 528 314 108 21 chr11 44853746 44854103 -76989753 - L1M4 LINE L1 -5074 1468 1090 4 927 681 24 0 0 chr11 44854453 44854536 -76989320 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 927 387 286 0 38 chr11 44854565 44854725 -76989131 + L1MA4 LINE L1 4680 4833 -1310 4 927 1033 336 58 27 chr11 44854931 44855571 -76988285 + L1MA4 LINE L1 4852 5519 -781 4 927 483 282 88 78 chr11 44855571 44855763 -76988093 - B3A SINE B2 -2 196 3 4 927 1033 318 59 44 chr11 44855763 44856093 -76987763 + L1MA4 LINE L1 5520 5851 -449 4 927 376 267 99 60 chr11 44856168 44856446 -76987410 + L1MA4 LINE L1 5976 6271 -29 4 927 719 225 104 6 chr11 44856459 44856642 -76987214 + B3 SINE B2 1 201 -15 4 927 412 325 90 50 chr11 44856831 44857110 -76986746 - L1M4 LINE L1 -5985 557 268 4 927 1121 161 60 19 chr11 44857121 44857336 -76986520 + URR1B DNA MER1_type 2 225 0 4 927 1008 260 35 40 chr11 44857434 44857751 -76986105 + Lx8 LINE L1 6882 7215 -258 4 927 23 0 0 0 chr11 44857866 44857889 -76985967 + AT_rich Low_complexity Low_complexity 1 23 0 4 927 1378 28 0 27 chr11 44858735 44859105 -76984751 + (CCA)n Simple_repeat Simple_repeat 1 359 0 4 927 17371 113 3 6 chr11 44862064 44865448 -76978408 + L1_Mus3 LINE L1 3266 6638 0 4 927 13775 95 18 9 chr11 44865569 44868512 -76975344 - L1VL2 LINE L1 -626 2989 22 4 927 245 342 14 0 chr11 44868556 44868629 -76975227 - ID4 SINE ID -8 75 2 4 927 322 228 11 11 chr11 44868638 44868731 -76975125 - L1M2 LINE L1 -1583 4560 4468 4 927 554 249 35 105 chr11 44868727 44868956 -76974900 + Lx9 LINE L1 7038 7250 -394 4 927 23 54 0 0 chr11 44869785 44869822 -76974034 + AT_rich Low_complexity Low_complexity 1 37 0 4 927 190 244 0 22 chr11 44870419 44870465 -76973391 - L2a LINE L2 -274 3152 3108 4 927 191 317 190 5 chr11 44870554 44870738 -76973118 - L2a LINE L2 -429 2990 2773 4 927 543 308 93 53 chr11 44870777 44871099 -76972757 - L2a LINE L2 -756 2663 2329 4 927 204 352 44 0 chr11 44871317 44871408 -76972448 - L2a LINE L2 -1495 1924 1830 4 927 918 298 65 25 chr11 44871493 44871772 -76972084 - B4 SINE B4 -2 290 1 4 927 2599 129 58 26 chr11 44871772 44872154 -76971702 + ORR1B1 LTR MaLR 1 394 0 4 927 287 312 32 8 chr11 44872178 44872304 -76971552 - L2a LINE L2 -1618 1801 1673 4 927 182 297 28 65 chr11 44872388 44872496 -76971360 - L2a LINE L2 -1888 1531 1428 4 927 1018 307 46 19 chr11 44872520 44872892 -76970964 - MLT1C LTR MaLR -22 445 64 4 927 711 182 0 8 chr11 44872892 44873014 -76970842 - B1_Mus2 SINE Alu 0 147 27 4 927 237 335 138 15 chr11 44873275 44873440 -76970416 - L2a LINE L2 -2263 1156 976 4 927 675 0 0 0 chr11 44873440 44873515 -76970341 + (GA)n Simple_repeat Simple_repeat 1 75 0 4 927 237 335 138 15 chr11 44873515 44873676 -76970180 - L2a LINE L2 -2444 975 791 4 927 269 26 26 0 chr11 44873883 44873921 -76969935 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 927 400 267 29 22 chr11 44874612 44874750 -76969106 + MTEb LTR MaLR 241 379 0 4 927 411 73 0 0 chr11 44875788 44875843 -76968013 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 4 927 447 301 51 84 chr11 44875912 44876090 -76967766 - MER5A DNA MER1_type -11 178 7 4 927 540 0 0 0 chr11 44876554 44876614 -76967242 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 927 189 0 0 0 chr11 44876614 44876634 -76967222 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 927 893 263 89 30 chr11 44876634 44876869 -76966987 - B4 SINE B4 -23 269 21 4 927 23 0 0 0 chr11 44876912 44876935 -76966921 + AT_rich Low_complexity Low_complexity 1 23 0 4 927 290 327 28 87 chr11 44877796 44878014 -76965842 - MIRb SINE MIR -8 260 56 4 927 222 239 0 64 chr11 44878692 44878786 -76965070 + A-rich Low_complexity Low_complexity 5 92 0 4 927 456 19 0 0 chr11 44878841 44878894 -76964962 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 927 236 174 72 0 chr11 44879103 44879172 -76964684 + A-rich Low_complexity Low_complexity 6 79 0 4 927 537 277 138 5 chr11 44880562 44880758 -76963098 + B4A SINE B4 5 226 -66 4 927 201 250 0 56 chr11 44880799 44880820 -76963036 + (CATA)n Simple_repeat Simple_repeat 4 24 0 4 927 207 0 0 0 chr11 44880820 44880843 -76963013 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 927 201 250 0 56 chr11 44880843 44880893 -76962963 + (CATA)n Simple_repeat Simple_repeat 1 46 0 5 927 586 164 11 43 chr11 44881000 44881185 -76962671 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 927 464 269 121 0 chr11 44881543 44881684 -76962172 + RSINE1 SINE B4 4 161 -4 5 927 325 67 50 0 chr11 44881766 44881826 -76962030 + (TATG)n Simple_repeat Simple_repeat 2 64 0 5 927 897 255 24 5 chr11 44882600 44882809 -76961047 - ID_B1 SINE B4 -10 214 2 5 927 612 0 0 0 chr11 44883174 44883242 -76960614 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 927 706 228 52 148 chr11 44883428 44883834 -76960022 + ORR1D2 LTR MaLR 4 370 0 5 927 930 249 24 5 chr11 44883977 44884187 -76959669 + B3 SINE B2 2 215 -1 5 927 245 303 60 68 chr11 44885848 44885965 -76957891 + Charlie4z DNA MER1_type 18 133 -34 5 927 180 179 0 0 chr11 44886891 44886930 -76956926 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 927 225 366 31 47 chr11 44887568 44887697 -76956159 + MIR SINE MIR 19 145 -63 5 927 23 0 0 0 chr11 44888253 44888276 -76955580 + AT_rich Low_complexity Low_complexity 1 23 0 5 927 230 250 0 0 chr11 44888289 44888333 -76955523 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 927 398 321 24 54 chr11 44888334 44888502 -76955354 - RSINE1 SINE B4 0 165 3 5 927 189 375 70 23 chr11 44888845 44889017 -76954839 + L2 LINE L2 2787 2966 -453 5 927 839 330 22 33 chr11 44890683 44890956 -76952900 - B4 SINE B4 -22 270 1 5 927 346 345 69 36 chr11 44892193 44892440 -76951416 - L2 LINE L2 -589 2830 2576 5 927 1724 165 13 0 chr11 44892441 44892780 -76951076 + Lx2 LINE L1 6611 6956 -41 5 927 252 284 15 15 chr11 44893159 44893227 -76950629 - RSINE1 SINE B4 -8 157 90 5 927 474 18 0 0 chr11 44893484 44893539 -76950317 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 927 360 0 0 0 chr11 44894605 44894645 -76949211 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 5 927 231 247 0 0 chr11 44895206 44895279 -76948577 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 927 519 290 71 34 chr11 44895788 44896166 -76947690 + Lx9 LINE L1 7253 7644 0 5 927 351 20 0 0 chr11 44896463 44896512 -76947344 + B1_Mur4 SINE Alu 102 150 0 5 927 518 296 0 17 chr11 44896919 44897036 -76946820 - RSINE1 SINE B4 -49 116 2 5 927 213 39 0 0 chr11 44897154 44897180 -76946676 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 927 856 300 22 47 chr11 44897285 44897561 -76946295 - B4A SINE B4 -14 278 10 5 927 468 0 0 0 chr11 44898564 44898616 -76945240 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 927 780 71 0 0 chr11 44899082 44899194 -76944662 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 927 653 285 8 47 chr11 44899364 44899582 -76944274 - B3A SINE B2 -5 211 1 5 927 267 234 0 0 chr11 44899602 44899679 -76944177 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 927 306 0 0 0 chr11 44899812 44899846 -76944010 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 927 414 0 0 0 chr11 44899860 44899906 -76943950 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 927 184 254 233 17 chr11 44901369 44901485 -76942371 + L3 LINE CR1 3461 3601 -888 5 927 411 188 0 0 chr11 44901500 44901612 -76942244 + CT-rich Low_complexity Low_complexity 1 112 0 5 927 526 351 38 29 chr11 44902588 44902826 -76941030 + B4A SINE B4 39 278 -14 5 927 393 215 33 44 chr11 44902849 44903029 -76940827 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 927 403 294 86 18 chr11 44903215 44903378 -76940478 + MER20 DNA MER1_type 46 219 0 5 927 469 173 29 0 chr11 44903901 44904005 -76939851 + Lx5 LINE L1 6941 7047 -3 5 927 924 272 63 29 chr11 44904013 44904425 -76939431 + L1M2 LINE L1 4498 4923 -1220 5 927 271 305 32 108 chr11 44904687 44905003 -76938853 + L1M2 LINE L1 5254 5545 -755 5 927 497 302 95 37 chr11 44905022 44905271 -76938585 + B4A SINE B4 20 282 -10 5 927 268 242 73 24 chr11 44905351 44905474 -76938382 + L1M2 LINE L1 5578 5706 -594 5 927 561 293 106 25 chr11 44905699 44905860 -76937996 + B3A SINE B2 1 174 -24 5 927 25 0 0 0 chr11 44905863 44905888 -76937968 + AT_rich Low_complexity Low_complexity 1 25 0 5 927 714 326 15 22 chr11 44906354 44906607 -76937249 - B4 SINE B4 -3 289 39 5 927 923 263 29 77 chr11 44906607 44906879 -76936977 - ORR1E LTR MaLR 0 359 101 5 927 305 271 16 73 chr11 44906906 44907186 -76936670 + (CATATA)n Simple_repeat Simple_repeat 1 263 0 5 927 288 0 0 0 chr11 44908049 44908081 -76935775 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 927 408 294 101 14 chr11 44908253 44908401 -76935455 + B4A SINE B4 4 164 -128 5 927 36291 30 0 0 chr11 44909482 44915522 -76928334 - L1Md_T LINE L1 0 6585 449 5 927 1265 161 19 19 chr11 44916135 44916350 -76927506 + B3 SINE B2 2 216 0 5 927 916 244 74 26 chr11 44917825 44918136 -76925720 - Lx9 LINE L1 -139 7505 7180 5 927 539 245 25 19 chr11 44918314 44918472 -76925384 + HAL1-2a_MD LINE L1 2343 2501 -523 5 927 182 314 92 11 chr11 44918476 44918563 -76925293 - MIRb SINE MIR -12 256 163 5 927 21 36 0 0 chr11 44919158 44919186 -76924670 + AT_rich Low_complexity Low_complexity 1 28 0 5 927 369 75 0 0 chr11 44919186 44919239 -76924617 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 927 230 315 140 43 chr11 44919240 44919333 -76924523 - B3A SINE B2 -42 156 55 5 927 462 322 136 27 chr11 44919345 44919565 -76924291 - B4 SINE B4 -47 245 2 5 927 396 0 0 0 chr11 44920490 44920534 -76923322 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 927 526 295 58 6 chr11 44920705 44920879 -76922977 + B3A SINE B2 1 183 -15 5 927 507 95 0 0 chr11 44920890 44920964 -76922892 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 927 457 323 6 75 chr11 44921435 44921609 -76922247 - RSINE1 SINE B4 0 165 4 5 927 296 361 41 12 chr11 44921714 44921885 -76921971 + MIR SINE MIR 70 245 -17 5 927 423 0 0 0 chr11 44921958 44922005 -76921851 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 927 684 130 0 0 chr11 44922005 44922143 -76921713 + (GA)n Simple_repeat Simple_repeat 1 138 0 5 927 494 294 291 31 chr11 44922326 44922706 -76921150 - MER90a LTR ERV1 -3 611 133 5 927 381 249 67 124 chr11 44922855 44923088 -76920768 + MTE2b LTR MaLR 124 367 -12 5 927 292 250 12 0 chr11 44923183 44923267 -76920589 - RCHARR1 DNA MER1_type -42 932 848 5 927 336 48 0 0 chr11 44923267 44923309 -76920547 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 927 5384 166 65 8 chr11 44923309 44925245 -76918611 - Lx5 LINE L1 -16 7034 4953 5 927 10676 115 23 38 chr11 44925243 44926466 -76917390 - Lx5 LINE L1 -2658 3219 2052 5 927 207 0 0 0 chr11 44926466 44926489 -76917367 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 927 10676 115 23 38 chr11 44926489 44926528 -76917328 - Lx5 LINE L1 -3826 2051 2015 5 927 208 0 62 0 chr11 44926528 44926560 -76917296 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 927 10676 115 23 38 chr11 44926560 44927243 -76916613 - Lx5 LINE L1 -3863 2014 1303 5 927 1395 178 72 0 chr11 44927241 44927534 -76916322 - Lx5 LINE L1 -5957 1129 816 5 927 323 252 128 14 chr11 44927598 44927739 -76916117 - Lx5 LINE L1 -6416 670 514 5 927 3171 231 45 42 chr11 44927746 44927781 -76916075 - RCHARR1 DNA MER1_type -120 854 819 5 927 348 24 0 0 chr11 44927781 44927822 -76916034 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 927 3171 231 45 42 chr11 44927822 44928169 -76915687 - RCHARR1 DNA MER1_type -156 818 483 5 927 733 282 5 32 chr11 44928169 44928385 -76915471 - B3 SINE B2 -5 211 2 5 927 3171 231 45 42 chr11 44928385 44928851 -76915005 - RCHARR1 DNA MER1_type -492 482 3 5 927 3152 70 0 14 chr11 44929188 44929609 -76914247 + L1Md_F2 LINE L1 6168 6582 0 5 927 766 286 9 24 chr11 44930732 44930943 -76912913 - ID_B1 SINE B4 -15 209 2 5 927 22 0 0 0 chr11 44930943 44930965 -76912891 + AT_rich Low_complexity Low_complexity 1 22 0 5 927 540 45 0 0 chr11 44930970 44931037 -76912819 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 927 218 296 126 16 chr11 44931167 44931294 -76912562 + MIR3 SINE MIR 51 191 -17 5 927 454 242 1 1 chr11 44932371 44932472 -76911384 + MTEa LTR MaLR 259 377 -2 5 927 204 305 161 92 chr11 44932742 44932872 -76910984 - MIRb SINE MIR -120 156 18 5 927 2922 138 50 74 chr11 44933086 44933642 -76910214 - RMER15 LTR ERVL 0 575 33 5 927 381 216 116 48 chr11 44933749 44933766 -76910090 + CYRA11_Mm Unknown Y-chromosome 149 175 -442 5 927 852 109 36 0 chr11 44933766 44933903 -76909953 - URR1A DNA MER1_type 0 226 85 5 927 228 248 54 27 chr11 44933817 44933929 -76909927 + Charlie21a DNA MER1_type 290 404 -809 5 927 625 293 34 17 chr11 44934142 44934319 -76909537 - B3A SINE B2 -18 180 1 5 927 1203 261 102 18 chr11 44934902 44935284 -76908572 + MTD LTR MaLR 6 419 0 5 927 418 276 9 37 chr11 44935951 44936060 -76907796 - MTD LTR MaLR -196 223 118 5 927 342 0 0 0 chr11 44936435 44936473 -76907383 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 927 288 335 189 45 chr11 44937950 44938194 -76905662 - L1MB1 LINE L1 -4 6164 5886 5 927 380 356 79 35 chr11 44938201 44938428 -76905428 + MLT1A1 LTR MaLR 3 239 -169 5 927 255 309 125 71 chr11 44938902 44939198 -76904658 + L1MB3 LINE L1 5391 5702 -469 5 927 325 217 0 0 chr11 44939233 44939302 -76904554 + Lx7 LINE L1 7228 7296 -400 5 927 549 0 0 0 chr11 44939415 44939476 -76904380 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 927 26 30 0 0 chr11 44939548 44939581 -76904275 + AT_rich Low_complexity Low_complexity 1 33 0 5 927 441 0 0 0 chr11 44939605 44939654 -76904202 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 927 962 252 9 32 chr11 44939673 44939894 -76903962 + ID_B1 SINE B4 9 224 0 5 927 354 274 170 43 chr11 44939922 44940204 -76903652 + L1MB3 LINE L1 5799 6116 -67 5 927 1914 324 80 23 chr11 44940269 44941351 -76902505 + Lx8 LINE L1 6103 7245 -228 5 927 1223 54 0 0 chr11 44941739 44941905 -76901951 + L1Md_F2 LINE L1 4192 4357 -1526 5 927 1311 18 0 6 chr11 44941911 44942076 -76901780 - L1Md_F3 LINE L1 -14 6570 6407 5 927 5028 36 2 0 chr11 44942101 44942731 -76901125 + L1Md_F3 LINE L1 5587 6217 -367 5 927 12430 53 1 0 chr11 44942724 44944652 -76899204 + L1Md_F2 LINE L1 4345 6274 -308 5 927 1140 80 0 18 chr11 44944664 44944830 -76899026 + L1Md_F2 LINE L1 6408 6570 -12 5 927 928 0 18 0 chr11 44945251 44945363 -76898493 + (CA)n Simple_repeat Simple_repeat 2 115 0 6 927 191 250 35 35 chr11 44945822 44945880 -76897976 - MIRb SINE MIR -194 74 17 6 927 635 293 43 14 chr11 44946010 44946218 -76897638 - B3 SINE B2 -2 214 1 6 927 225 258 0 0 chr11 44946730 44946792 -76897064 - MER57F LTR ERV1 -3 433 372 6 927 488 45 0 15 chr11 44946844 44946912 -76896944 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 927 2914 41 6 0 chr11 44946929 44947273 -76896583 + ORR1A1 LTR MaLR 1 346 0 6 927 728 310 94 0 chr11 44947289 44947544 -76896312 - B4A SINE B4 -4 288 10 6 927 728 224 151 36 chr11 44947553 44947831 -76896025 - MER57F LTR ERV1 -124 312 3 6 927 380 336 91 12 chr11 44949214 44949467 -76894389 + B4A SINE B4 2 274 -18 6 927 247 258 0 15 chr11 44949515 44949582 -76894274 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 927 505 276 9 0 chr11 44953422 44953538 -76890318 + B3A SINE B2 47 163 -35 6 927 941 118 6 0 chr11 44953580 44953758 -76890098 + (TC)n Simple_repeat Simple_repeat 1 179 0 6 927 185 323 0 0 chr11 44954226 44954291 -76889565 + MIR SINE MIR 86 150 -112 6 927 181 20 35 105 chr11 44954961 44955018 -76888838 + T-rich Low_complexity Low_complexity 2 54 0 6 927 814 83 8 8 chr11 44955409 44955531 -76888325 + B2_Mm2 SINE B2 49 170 -25 6 927 542 311 161 9 chr11 44955555 44955876 -76887980 - MLT1A LTR MaLR -4 370 1 6 927 329 191 206 19 chr11 44956070 44956177 -76887679 + MER20 DNA MER1_type 93 219 0 6 927 958 231 181 42 chr11 44956406 44956759 -76887097 + MTD LTR MaLR 4 405 -14 6 927 244 329 70 61 chr11 44956951 44957181 -76886675 + L2a LINE L2 3077 3308 -118 6 928 632 277 37 16 chr11 44958016 44958203 -76885653 + B3A SINE B2 6 196 -2 6 928 325 302 27 7 chr11 44958227 44958377 -76885479 + (TATATG)n Simple_repeat Simple_repeat 3 155 0 6 928 607 314 13 0 chr11 44960637 44960790 -76883066 + RSINE1 SINE B4 9 163 -2 6 928 408 329 34 0 chr11 44960822 44960968 -76882888 + MER45A DNA Tip100 5 155 -23 6 928 243 0 0 0 chr11 44961146 44961173 -76882683 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 928 582 336 59 59 chr11 44961888 44962242 -76881614 - MLT1I LTR MaLR -2 409 56 6 928 1146 71 0 0 chr11 44963177 44963317 -76880539 - L1_Mus1 LINE L1 -325 6242 6103 6 928 2392 72 0 16 chr11 44963317 44963639 -76880217 + L1_Mus1 LINE L1 6250 6566 -1 6 928 333 0 0 0 chr11 44964831 44964868 -76878988 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 928 233 344 164 5 chr11 44966226 44966445 -76877411 + L2 LINE L2 2712 2965 -454 6 928 1030 309 59 14 chr11 44966639 44966994 -76876862 - MTE2b LTR MaLR -3 376 6 6 928 688 289 30 30 chr11 44967325 44967528 -76876328 + ID_B1 SINE B4 2 204 -20 6 928 23 33 0 0 chr11 44967571 44967601 -76876255 + AT_rich Low_complexity Low_complexity 1 30 0 6 928 429 70 0 0 chr11 44967667 44967724 -76876132 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 928 1015 157 134 15 chr11 44969681 44969882 -76873974 - URR1A DNA MER1_type -1 225 1 6 928 201 311 108 0 chr11 44970067 44970141 -76873715 + MIRb SINE MIR 1 82 -186 6 928 2326 58 10 7 chr11 44970170 44970480 -76873376 - L1Md_F2 LINE L1 0 6582 6272 6 928 615 206 274 59 chr11 44971030 44971216 -76872640 + URR1A DNA MER1_type 1 226 0 6 928 189 94 0 0 chr11 44971473 44971505 -76872351 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 6 928 935 264 82 48 chr11 44971505 44971835 -76872021 - ORR1D2 LTR MaLR -29 341 1 6 928 210 318 37 28 chr11 44972032 44972174 -76871682 - MIRc SINE MIR -69 199 49 6 928 1442 73 15 20 chr11 44972989 44973185 -76870671 + B2_Mm2 SINE B2 1 195 0 6 928 587 249 11 45 chr11 44973208 44973385 -76870471 - Lx9 LINE L1 -253 7391 7221 6 928 315 234 0 21 chr11 44973392 44973488 -76870368 + Lx9 LINE L1 7423 7516 -128 6 928 508 174 16 0 chr11 44973493 44973614 -76870242 + (TA)n Simple_repeat Simple_repeat 1 123 0 6 928 760 152 52 6 chr11 44973616 44973788 -76870068 + Lx9 LINE L1 7464 7643 -1 6 928 202 312 177 0 chr11 44973914 44974010 -76869846 - MIRb SINE MIR -138 130 18 6 928 278 288 55 0 chr11 44974327 44974400 -76869456 - RSINE1 SINE B4 -17 148 72 6 928 263 345 25 0 chr11 44974575 44974694 -76869162 - MER58B DNA MER1_type -59 282 161 6 928 312 231 62 36 chr11 44974920 44975032 -76868824 + L1MB5 LINE L1 6053 6167 -7 6 928 407 356 49 95 chr11 44975351 44975739 -76868117 - MLT1A LTR MaLR -1 373 4 6 928 602 141 8 55 chr11 44976245 44976373 -76867483 - URR1B DNA MER1_type -21 204 83 6 928 8511 35 2 0 chr11 44976571 44977607 -76866249 - L1Md_F2 LINE L1 0 6582 5545 6 928 519 345 42 13 chr11 44977786 44978094 -76865762 + L1MB7 LINE L1 5584 5900 -284 6 928 216 97 0 0 chr11 44978320 44978351 -76865505 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 6 928 596 291 41 27 chr11 44978351 44978490 -76865366 - B4 SINE B4 -69 223 84 6 928 464 0 0 18 chr11 44978490 44978547 -76865309 + (TTA)n Simple_repeat Simple_repeat 2 57 0 6 928 596 291 41 27 chr11 44978547 44978626 -76865230 - B4 SINE B4 -209 83 3 6 928 457 309 19 39 chr11 44978775 44978930 -76864926 + RSINE1 SINE B4 14 165 0 6 928 215 283 0 0 chr11 44978930 44978990 -76864866 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 928 328 293 0 42 chr11 44979032 44979128 -76864728 + B3A SINE B2 9 100 -98 6 928 517 186 53 0 chr11 44979492 44979605 -76864251 + B3 SINE B2 98 216 0 6 928 655 295 106 13 chr11 44980107 44980344 -76863512 + B4A SINE B4 1 259 -33 6 928 283 331 17 62 chr11 44981577 44981754 -76862102 + MIRb SINE MIR 30 198 -70 6 928 1301 201 2 6 chr11 44981775 44982022 -76861834 + Lx5 LINE L1 6330 6576 -424 6 928 772 191 51 31 chr11 44982015 44982193 -76861663 + Lx5 LINE L1 6888 7047 -3 6 928 245 112 12 59 chr11 44982539 44982624 -76861232 + T-rich Low_complexity Low_complexity 1 81 0 6 928 224 280 0 0 chr11 44983276 44983326 -76860530 + GA-rich Low_complexity Low_complexity 5 54 0 6 928 286 203 27 7 chr11 44983526 44983675 -76860181 + (TA)n Simple_repeat Simple_repeat 1 152 0 6 928 369 174 0 0 chr11 44983642 44983711 -76860145 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 928 1227 138 113 0 chr11 44983752 44983955 -76859901 - URR1A DNA MER1_type 0 226 1 6 928 573 15 0 0 chr11 44984522 44984588 -76859268 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 928 292 340 35 65 chr11 44984641 44984811 -76859045 - B4A SINE B4 -2 290 126 6 928 216 103 0 25 chr11 44984812 44984852 -76859004 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 928 208 356 130 0 chr11 44984895 44985010 -76858846 - MIRm SINE MIR -112 164 35 6 928 396 0 0 0 chr11 44985782 44985826 -76858030 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 928 3186 56 19 7 chr11 44986275 44986709 -76857147 + L1Md_F2 LINE L1 6157 6582 0 6 928 3186 56 19 7 chr11 44986709 44986721 -76857135 + L1Md_F2 LINE L1 6561 6572 -10 6 928 297 317 78 23 chr11 44987720 44987887 -76855969 - MER58A DNA MER1_type -1 340 54 6 928 854 298 37 0 chr11 44987887 44988102 -76855754 + ID_B1 SINE B4 2 224 0 6 928 24 0 0 0 chr11 44988630 44988654 -76855202 + AT_rich Low_complexity Low_complexity 1 24 0 6 928 429 54 0 0 chr11 44989310 44989366 -76854490 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 928 450 0 0 0 chr11 44989588 44989638 -76854218 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 928 465 19 0 0 chr11 44989699 44989753 -76854103 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 928 319 346 98 50 chr11 44989989 44990406 -76853450 - MER113 DNA MER1_type -13 508 72 6 928 834 247 95 46 chr11 44990517 44990780 -76853076 - B4 SINE B4 0 292 17 6 928 312 261 0 0 chr11 44990991 44991060 -76852796 + B1_Mur4 SINE Alu 11 79 -71 6 928 339 113 0 0 chr11 44992595 44992648 -76851208 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 928 716 289 23 42 chr11 44992668 44992847 -76851009 - B4 SINE B4 -19 273 90 6 928 369 0 0 0 chr11 44992847 44992888 -76850968 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 928 716 289 23 42 chr11 44992888 44992925 -76850931 - B4 SINE B4 -203 89 61 6 928 307 274 82 36 chr11 44992921 44993031 -76850825 - RSINE1 SINE B4 -7 158 44 6 928 402 295 26 26 chr11 44993032 44993185 -76850671 - HAL1-2a_MD LINE L1 -521 2503 2351 6 928 1010 122 0 6 chr11 44993193 44993374 -76850482 + (TGG)n Simple_repeat Simple_repeat 1 180 0 6 928 872 170 0 4 chr11 44993386 44993667 -76850189 + (TGG)n Simple_repeat Simple_repeat 1 279 0 6 928 463 219 62 0 chr11 44993720 44993816 -76850040 - RSINE1 SINE B4 -57 108 7 6 928 244 229 0 0 chr11 44993837 44993898 -76849958 - B4 SINE B4 -230 62 2 6 928 524 309 9 95 chr11 44995054 44995286 -76848570 - B3 SINE B2 0 216 5 6 928 498 277 27 41 chr11 44995292 44995439 -76848417 + MER20 DNA MER1_type 54 198 -21 6 928 1607 223 141 73 chr11 44995455 44995973 -76847883 - RLTR31_Mur LTR ERVK 0 553 1 6 928 1156 209 0 5 chr11 44995990 44996206 -76847650 + B3 SINE B2 1 215 -1 6 928 861 307 37 26 chr11 44996237 44996508 -76847348 + B4 SINE B4 1 274 -18 6 928 516 56 0 0 chr11 44996571 44996643 -76847213 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 928 194 128 0 41 chr11 44996648 44996697 -76847159 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 6 928 186 43 0 0 chr11 44998781 44998804 -76845052 + (TTTTTG)n Simple_repeat Simple_repeat 5 27 0 6 928 190 366 18 18 chr11 44999420 44999534 -76844322 - MIRb SINE MIR -35 233 120 6 928 477 0 0 0 chr11 44999839 44999892 -76843964 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 928 294 235 0 42 chr11 45000360 45000431 -76843425 - L2a LINE L2 -12 3414 3347 1 928 252 0 0 0 chr11 45001128 45001156 -76842700 + (TTC)n Simple_repeat Simple_repeat 1 28 0 2 928 411 21 0 0 chr11 45001156 45001204 -76842652 + (TTA)n Simple_repeat Simple_repeat 1 48 0 3 928 447 315 100 35 chr11 45001499 45001759 -76842097 + B4A SINE B4 3 279 -13 4 928 387 0 0 0 chr11 45001791 45001834 -76842022 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 928 753 277 95 37 chr11 45001942 45002268 -76841588 + MER2 DNA MER2_type 1 345 0 6 928 216 167 0 0 chr11 45004928 45004964 -76838892 + CT-rich Low_complexity Low_complexity 2 37 0 7 928 181 411 17 17 chr11 45005937 45006177 -76837679 - L2a LINE L2 -43 3383 3144 8 928 745 107 20 13 chr11 45006458 45006609 -76837247 + (TCTA)n Simple_repeat Simple_repeat 1 152 0 9 928 250 350 35 21 chr11 45007025 45007168 -76836688 + MIR SINE MIR 117 261 -1 1 928 181 289 0 0 chr11 45008009 45008047 -76835809 - L3 LINE CR1 -124 4365 4328 1 928 267 278 66 57 chr11 45008087 45008209 -76835647 + RSINE1 SINE B4 3 125 -40 1 928 386 85 41 41 chr11 45009601 45009699 -76834157 + (TCTCTG)n Simple_repeat Simple_repeat 2 99 0 1 928 287 336 9 9 chr11 45010719 45010827 -76833029 - Tigger11a DNA MER2_type 0 735 628 1 928 1161 69 0 0 chr11 45010944 45011089 -76832767 + B1_Mm SINE Alu 3 147 0 1 928 24 0 0 0 chr11 45011089 45011113 -76832743 + AT_rich Low_complexity Low_complexity 1 24 0 1 928 438 20 0 0 chr11 45013166 45013217 -76830639 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 928 204 326 21 62 chr11 45014031 45014175 -76829681 + MIR SINE MIR 79 216 -46 1 928 419 290 66 40 chr11 45014220 45014371 -76829485 + B3A SINE B2 2 156 -42 1 928 189 107 0 0 chr11 45014557 45014585 -76829271 + (A)n Simple_repeat Simple_repeat 1 28 0 2 928 216 167 0 0 chr11 45015280 45015316 -76828540 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 928 222 331 73 20 chr11 45015447 45015598 -76828258 - MIR SINE MIR -20 242 84 2 928 645 119 0 0 chr11 45017805 45017906 -76825950 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 928 303 254 26 60 chr11 45017915 45018032 -76825824 + Lx8 LINE L1 7349 7461 -12 2 928 595 278 12 18 chr11 45018740 45018905 -76824951 - RSINE1 SINE B4 0 165 2 2 928 690 82 0 0 chr11 45018938 45019036 -76824820 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 2 928 990 113 0 0 chr11 45019056 45019287 -76824569 + (TTCC)n Simple_repeat Simple_repeat 1 231 0 2 928 331 291 22 30 chr11 45021132 45021319 -76822537 + CT-rich Low_complexity Low_complexity 1 185 0 2 928 258 321 0 0 chr11 45022279 45022357 -76821499 - BC1_Mm scRNA scRNA -69 83 6 2 928 1089 296 92 41 chr11 45022373 45022714 -76821142 - Lx8 LINE L1 0 7473 7121 3 928 1653 168 11 106 chr11 45022714 45023167 -76820689 + RMER17C LTR ERVK 1 410 0 3 928 1089 296 92 41 chr11 45023167 45023333 -76820523 - Lx8 LINE L1 -353 7120 6940 3 928 277 328 110 25 chr11 45023827 45024027 -76819829 - Tigger15a DNA TcMar -346 369 153 3 928 1244 245 63 26 chr11 45024275 45024623 -76819233 - ORR1D2 LTR MaLR 0 370 10 3 928 1243 200 60 93 chr11 45024643 45025095 -76818761 + RMER10A LTR ERVL 1 437 -5 3 928 189 107 0 0 chr11 45025101 45025129 -76818727 + (TCTCCC)n Simple_repeat Simple_repeat 4 31 0 3 928 695 71 10 0 chr11 45025413 45025511 -76818345 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 3 928 698 284 61 54 chr11 45025879 45026173 -76817683 - L1MA4 LINE L1 -412 5888 5593 3 928 1071 51 66 0 chr11 45026314 45026451 -76817405 + B1_Mus2 SINE Alu 2 147 0 3 928 240 224 503 0 chr11 45027022 45027129 -76816727 + B3A SINE B2 1 161 -37 3 928 784 268 42 23 chr11 45027664 45027940 -76815916 + ORR1E LTR MaLR 18 335 -44 4 928 266 325 40 16 chr11 45029416 45029541 -76814315 + MIRb SINE MIR 121 248 -20 4 928 908 267 0 9 chr11 45029634 45029846 -76814010 + B3 SINE B2 2 211 -5 4 928 306 0 0 0 chr11 45030000 45030034 -76813822 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 928 273 188 25 12 chr11 45030833 45030914 -76812942 + GA-rich Low_complexity Low_complexity 4 85 0 4 928 1271 223 18 122 chr11 45031171 45031319 -76812537 + Lx5 LINE L1 6742 6893 -157 4 928 195 42 0 0 chr11 45031319 45031343 -76812513 + (TTC)n Simple_repeat Simple_repeat 2 25 0 4 928 1271 223 18 122 chr11 45031343 45031385 -76812471 + Lx5 LINE L1 6894 6898 -152 4 928 565 49 0 12 chr11 45031385 45031467 -76812389 - L1Md_F2 LINE L1 0 6582 6502 4 928 1271 223 18 122 chr11 45031467 45031612 -76812244 + Lx5 LINE L1 6899 7043 -7 4 928 26 0 0 0 chr11 45031843 45031869 -76811987 + AT_rich Low_complexity Low_complexity 1 26 0 4 928 1259 246 33 16 chr11 45033105 45033468 -76810388 + ORR1D2 LTR MaLR 1 369 -1 4 928 749 298 11 5 chr11 45033552 45033762 -76810094 + B3A SINE B2 1 212 -4 5 928 241 250 0 18 chr11 45035560 45035617 -76808239 + GA-rich Low_complexity Low_complexity 4 59 0 5 928 266 306 87 117 chr11 45036193 45036423 -76807433 - B4 SINE B4 0 292 70 5 928 678 275 0 0 chr11 45036459 45036630 -76807226 - B3A SINE B2 -27 171 1 5 928 355 185 111 0 chr11 45036634 45036715 -76807141 - B4A SINE B4 -201 91 2 5 928 246 125 0 0 chr11 45036869 45036917 -76806939 + (TTTTTG)n Simple_repeat Simple_repeat 4 51 0 5 928 227 330 43 21 chr11 45037499 45037592 -76806264 + MLT1L LTR MaLR 122 216 -394 5 928 252 200 0 18 chr11 45037846 45037902 -76805954 + B3 SINE B2 2 56 -160 5 928 405 277 95 26 chr11 45038110 45038299 -76805557 + MER5C DNA MER1_type 112 313 0 5 928 269 349 187 12 chr11 45038630 45038696 -76805160 + B4 SINE B4 17 85 -207 5 928 716 77 0 9 chr11 45038696 45038801 -76805055 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 6 928 269 349 187 12 chr11 45038801 45038905 -76804951 + B4 SINE B4 86 217 -75 5 928 240 86 0 0 chr11 45038905 45038940 -76804916 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 928 278 264 181 45 chr11 45039010 45039153 -76804703 + B3 SINE B2 41 206 -10 5 928 234 125 0 0 chr11 45039153 45039201 -76804655 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 928 278 264 181 45 chr11 45039201 45039212 -76804644 + B3 SINE B2 207 216 0 5 928 5227 123 34 6 chr11 45039282 45040840 -76803016 + L1Md_F LINE L1 380 1982 -3901 6 928 4222 101 8 2 chr11 45040835 45041453 -76802403 + MusHAL1 LINE L1 1504 2125 -587 6 928 8167 41 2 0 chr11 45041453 45042409 -76801447 + L1_Mus1 LINE L1 5610 6567 0 6 928 261 0 0 0 chr11 45042481 45042510 -76801346 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 928 186 71 0 0 chr11 45042846 45042874 -76800982 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 6 928 396 0 0 0 chr11 45043017 45043061 -76800795 + (T)n Simple_repeat Simple_repeat 1 44 0 6 928 217 307 39 39 chr11 45043555 45043633 -76800223 + MIRb SINE MIR 52 129 -139 6 928 462 337 47 6 chr11 45043789 45043959 -76799897 - B3A SINE B2 -21 177 1 7 928 7594 48 4 9 chr11 45044187 45045120 -76798736 + L1Md_F2 LINE L1 5654 6582 0 7 928 270 324 130 28 chr11 45045521 45045737 -76798119 - MIRb SINE MIR -9 259 22 7 928 21 71 0 0 chr11 45046015 45046057 -76797799 + AT_rich Low_complexity Low_complexity 1 42 0 7 928 184 95 0 87 chr11 45046563 45046609 -76797247 + (TAA)n Simple_repeat Simple_repeat 2 43 0 7 928 381 333 87 34 chr11 45047410 45047767 -76796089 + MER113 DNA MER1_type 146 521 0 7 928 216 0 0 0 chr11 45048275 45048299 -76795557 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 928 252 0 0 0 chr11 45048299 45048326 -76795530 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 928 180 0 0 0 chr11 45048326 45048345 -76795511 + (GA)n Simple_repeat Simple_repeat 2 21 0 7 928 181 274 32 0 chr11 45048496 45048558 -76795298 + L2a LINE L2 3272 3335 -91 7 928 685 296 14 19 chr11 45050060 45050267 -76793589 + ID_B1 SINE B4 3 208 -16 8 928 190 217 29 0 chr11 45053041 45053110 -76790746 + (CACG)n Simple_repeat Simple_repeat 1 71 0 8 928 469 267 69 57 chr11 45053954 45054200 -76789656 + MER121 Unknown Unknown 13 261 -151 8 928 295 21 42 21 chr11 45054810 45054858 -76788998 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 928 183 42 0 0 chr11 45055612 45055636 -76788220 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 8 928 2485 187 2 15 chr11 45055928 45056390 -76787466 + Lx2B LINE L1 6208 6663 -337 8 928 219 88 0 0 chr11 45056399 45056433 -76787423 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 928 300 298 77 0 chr11 45057168 45057272 -76786584 + MLT2C2 LTR ERVL 382 493 -66 8 928 898 289 62 88 chr11 45057566 45057953 -76785903 - MTE2b LTR MaLR 0 379 3 8 928 183 100 0 0 chr11 45058277 45058307 -76785549 + (A)n Simple_repeat Simple_repeat 1 30 0 8 928 350 42 0 20 chr11 45060542 45060591 -76783265 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 928 509 314 178 21 chr11 45060657 45060898 -76782958 - B4A SINE B4 -3 289 11 9 928 312 274 123 86 chr11 45060942 45061162 -76782694 + L2a LINE L2 3199 3426 0 9 928 207 88 0 0 chr11 45063975 45064009 -76779847 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 9 928 518 205 78 66 chr11 45064348 45064515 -76779341 + Lx8 LINE L1 7305 7473 0 9 928 444 335 29 17 chr11 45064783 45064956 -76778900 + ORR1E LTR MaLR 1 175 -184 9 928 349 335 17 107 chr11 45065115 45065358 -76778498 + MTEb LTR MaLR 121 372 -7 9 928 27 0 0 0 chr11 45066434 45066461 -76777395 + AT_rich Low_complexity Low_complexity 1 27 0 9 928 334 121 30 0 chr11 45066849 45066915 -76776941 + GA-rich Low_complexity Low_complexity 1 68 0 9 928 655 283 65 13 chr11 45066947 45067229 -76776627 - ORR1D2 LTR MaLR -2 368 6 9 928 23 0 0 0 chr11 45067618 45067641 -76776215 + AT_rich Low_complexity Low_complexity 1 23 0 1 928 23 0 0 0 chr11 45068547 45068570 -76775286 + AT_rich Low_complexity Low_complexity 1 23 0 1 928 681 110 0 0 chr11 45068773 45068882 -76774974 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 928 592 264 23 6 chr11 45068988 45069163 -76774693 + B3 SINE B2 38 215 -1 1 928 657 239 44 132 chr11 45069322 45069549 -76774307 + B3 SINE B2 1 207 -9 1 928 313 169 12 12 chr11 45070502 45070586 -76773270 + GA-rich Low_complexity Low_complexity 2 85 0 1 928 192 179 0 0 chr11 45071088 45071127 -76772729 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1 928 362 188 70 41 chr11 45071214 45071386 -76772470 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 1 928 24 32 0 0 chr11 45071386 45071417 -76772439 + AT_rich Low_complexity Low_complexity 1 31 0 1 928 650 47 12 0 chr11 45072021 45072107 -76771749 + (TTCTC)n Simple_repeat Simple_repeat 4 90 0 1 928 1347 85 28 19 chr11 45072162 45072377 -76771479 - L1_Mus3 LINE L1 -2 6636 6420 1 928 1079 306 0 7 chr11 45073165 45073435 -76770421 + B4A SINE B4 10 277 -15 1 928 243 0 0 0 chr11 45073888 45073915 -76769941 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 928 405 0 0 0 chr11 45073915 45073959 -76769897 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 928 354 279 25 125 chr11 45074488 45074648 -76769208 + B4 SINE B4 7 150 -142 1 928 198 0 0 0 chr11 45074774 45074796 -76769060 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 928 269 187 13 0 chr11 45074796 45074871 -76768985 + GA-rich Low_complexity Low_complexity 1 76 0 1 928 255 336 62 14 chr11 45074966 45075111 -76768745 + MIRc SINE MIR 30 181 -87 1 928 192 256 55 79 chr11 45075461 45075588 -76768268 - MIRb SINE MIR -52 216 93 1 928 339 247 0 0 chr11 45076938 45077011 -76766845 - ID4 SINE ID -7 76 4 1 928 28 0 0 0 chr11 45077347 45077375 -76766481 + AT_rich Low_complexity Low_complexity 1 28 0 1 928 993 258 31 17 chr11 45077910 45078198 -76765658 + B4A SINE B4 1 292 0 1 928 255 125 0 0 chr11 45078227 45078267 -76765589 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1 928 252 330 10 0 chr11 45079174 45079274 -76764582 + MIRm SINE MIR 22 122 -154 1 928 204 40 0 0 chr11 45079276 45079301 -76764555 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 928 449 306 86 45 chr11 45080302 45080569 -76763287 + B4A SINE B4 1 278 -14 1 928 265 301 54 0 chr11 45081281 45081374 -76762482 + B1_Mur2 SINE Alu 1 98 -51 1 928 315 302 97 50 chr11 45081755 45082034 -76761822 + B4A SINE B4 1 292 0 1 928 299 302 0 11 chr11 45082068 45082155 -76761701 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 928 226 105 0 0 chr11 45082238 45082276 -76761580 + MIRc SINE MIR 114 151 -117 1 928 341 281 118 30 chr11 45082660 45082829 -76761027 - L3 LINE CR1 -789 3700 3517 1 928 236 345 35 17 chr11 45083042 45083157 -76760699 - MER103 DNA DNA -49 117 1 1 928 459 0 0 0 chr11 45083504 45083555 -76760301 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 928 838 274 87 16 chr11 45083567 45083819 -76760037 - B4 SINE B4 -20 272 3 1 928 268 311 28 169 chr11 45083968 45084258 -76759598 + ORR1E LTR MaLR 99 347 -12 1 928 426 272 32 48 chr11 45084529 45084718 -76759138 + L2a LINE L2 3218 3403 -23 1 928 408 324 53 13 chr11 45085456 45085606 -76758250 + B4A SINE B4 10 165 -127 1 928 182 208 19 0 chr11 45085691 45085744 -76758112 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 928 289 271 35 92 chr11 45086132 45086274 -76757582 + MER20 DNA MER1_type 16 149 -70 1 928 402 333 31 19 chr11 45086320 45086482 -76757374 - MER5A DNA MER1_type 0 189 26 1 928 426 20 0 0 chr11 45088575 45088626 -76755230 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 929 236 281 62 62 chr11 45089514 45089643 -76754213 + L2b LINE L2 3247 3378 -9 1 929 1345 41 6 0 chr11 45089696 45089867 -76753989 - L1Md_A LINE L1 -1 6581 6410 1 929 494 302 25 25 chr11 45091151 45091314 -76752542 - MER5B DNA MER1_type -14 164 2 1 929 423 0 0 0 chr11 45091546 45091593 -76752263 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 929 261 377 106 47 chr11 45092499 45092972 -76750884 - MLT1K LTR MaLR -22 573 73 1 929 1029 96 0 19 chr11 45094681 45094841 -76749015 + B2_Mm2 SINE B2 5 161 -34 1 929 245 320 86 37 chr11 45095184 45095346 -76748510 + MIR SINE MIR 63 232 -30 1 929 581 336 103 40 chr11 45095440 45095896 -76747960 + MER90a LTR ERV1 122 606 -8 1 929 195 42 0 0 chr11 45097195 45097219 -76746637 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 929 3173 66 9 12 chr11 45097320 45097749 -76746107 - L1_Mus3 LINE L1 -4 6634 6207 1 929 197 232 14 0 chr11 45098001 45098070 -76745786 + (CAT)n Simple_repeat Simple_repeat 1 70 0 1 929 351 0 0 0 chr11 45098957 45098996 -76744860 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 929 197 189 57 0 chr11 45099035 45099088 -76744768 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 1 929 1885 133 32 65 chr11 45099541 45099879 -76743977 + ORR1A2 LTR MaLR 1 327 0 1 929 233 333 37 0 chr11 45100727 45100808 -76743048 + L2a LINE L2 3343 3426 0 1 929 180 200 0 0 chr11 45100916 45100956 -76742900 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 929 23 0 0 0 chr11 45101453 45101476 -76742380 + AT_rich Low_complexity Low_complexity 1 23 0 1 929 561 388 56 24 chr11 45101537 45101875 -76741981 - MLT1G LTR MaLR -5 586 238 1 929 299 314 61 54 chr11 45102416 45102564 -76741292 - MIRm SINE MIR -127 149 1 1 929 281 299 122 13 chr11 45102996 45103152 -76740704 - MLT1L LTR MaLR -276 334 162 1 929 594 304 117 60 chr11 45103769 45104119 -76739737 + Lx8 LINE L1 6521 6890 -583 1 929 4839 39 2 2 chr11 45105976 45106578 -76737278 - L1Md_F3 LINE L1 0 6584 5995 1 929 233 326 48 14 chr11 45107256 45107402 -76736454 + MER58A DNA MER1_type 58 208 -16 1 929 2250 112 12 12 chr11 45108856 45109183 -76734673 - ORR1A2 LTR MaLR 0 327 1 1 929 985 63 19 19 chr11 45109379 45109540 -76734316 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 1 929 382 328 47 0 chr11 45109554 45109682 -76734174 - RSINE1 SINE B4 -29 136 3 1 929 236 358 8 24 chr11 45109705 45109828 -76734028 + MER5A DNA MER1_type 8 128 -61 1 929 2035 63 59 4 chr11 45111369 45111641 -76732215 - L1_Mus2 LINE L1 0 6566 6280 1 929 1818 57 0 22 chr11 45111641 45111873 -76731983 + L1_Mus2 LINE L1 6063 6289 -277 1 929 963 160 0 0 chr11 45112328 45112503 -76731353 + CT-rich Low_complexity Low_complexity 4 178 0 1 929 458 350 66 11 chr11 45112566 45112748 -76731108 - B4A SINE B4 -18 274 83 1 929 35 0 0 0 chr11 45113187 45113222 -76730634 + AT_rich Low_complexity Low_complexity 1 35 0 1 929 347 246 9 0 chr11 45113846 45113956 -76729900 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 929 270 144 61 82 chr11 45113962 45114060 -76729796 - Lx9 LINE L1 -127 7517 7422 1 929 1384 248 61 52 chr11 45114803 45115006 -76728850 - ORR1D2 LTR MaLR 0 370 173 1 929 369 95 0 0 chr11 45115006 45115069 -76728787 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 1 929 1384 248 61 52 chr11 45115069 45115227 -76728629 - ORR1D2 LTR MaLR -198 172 6 1 929 745 291 64 54 chr11 45115568 45116069 -76727787 + L1MB4 LINE L1 4827 5332 -814 1 929 659 303 73 30 chr11 45116042 45116372 -76727484 + L1MB4 LINE L1 5736 6079 -101 1 929 202 317 0 0 chr11 45116385 45116445 -76727411 + GA-rich Low_complexity Low_complexity 1 60 0 1 929 1099 104 6 6 chr11 45116446 45116620 -76727236 + (GAA)n Simple_repeat Simple_repeat 1 174 0 1 929 236 242 233 8 chr11 45117807 45117940 -76725916 - MER3 DNA MER1_type -40 169 7 1 929 324 326 68 0 chr11 45118287 45118419 -76725437 - MLT1I LTR MaLR -270 141 1 1 929 232 382 19 71 chr11 45118701 45118856 -76725000 + MamRep1879 DNA hAT? 1 147 -69 1 929 697 350 47 21 chr11 45118998 45119336 -76724520 - ORR1E LTR MaLR -7 352 6 1 929 2106 121 42 60 chr11 45119392 45119725 -76724131 + ORR1A2 LTR MaLR 1 327 0 1 929 1088 262 116 32 chr11 45119776 45120312 -76723544 - L1MB4 LINE L1 -1 6179 5599 1 929 309 319 17 8 chr11 45120478 45120598 -76723258 + (TATG)n Simple_repeat Simple_repeat 2 122 0 1 929 196 237 8 48 chr11 45120598 45120722 -76723134 + (TATATG)n Simple_repeat Simple_repeat 6 124 0 1 929 713 287 89 54 chr11 45120725 45121005 -76722851 - B4A SINE B4 0 292 3 1 929 951 285 84 10 chr11 45122454 45122752 -76721104 - MER2 DNA MER2_type -3 342 23 1 929 229 293 58 39 chr11 45123407 45123510 -76720346 - L1MD2 LINE L1 -6375 172 68 1 929 220 304 96 19 chr11 45123882 45123986 -76719870 + L3b LINE CR1 289 400 -82 1 929 1079 43 14 0 chr11 45126055 45126195 -76717661 + (GGGAGA)n Simple_repeat Simple_repeat 3 144 0 1 929 390 42 0 0 chr11 45126283 45126331 -76717525 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 929 231 0 0 71 chr11 45126487 45126529 -76717327 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 929 730 221 57 61 chr11 45126710 45126922 -76716934 + B3 SINE B2 6 216 0 1 929 391 339 30 110 chr11 45126988 45127389 -76716467 - MTEb LTR MaLR -7 372 4 1 929 399 302 180 21 chr11 45127395 45127723 -76716133 - L2 LINE L2 -998 2421 2042 1 929 290 226 29 141 chr11 45128266 45128436 -76715420 - B2_Mm2 SINE B2 -10 185 35 1 929 265 280 44 65 chr11 45128447 45128546 -76715310 + L1ME2z LINE L1 5487 5584 -860 1 929 6929 52 16 5 chr11 45128546 45129365 -76714491 + L1Md_F2 LINE L1 5745 6572 -10 1 929 265 280 44 65 chr11 45129365 45129494 -76714362 + L1ME2z LINE L1 5585 5709 -735 1 929 330 301 139 20 chr11 45129530 45129781 -76714075 + L1ME2z LINE L1 5795 6075 -369 1 929 1919 221 14 35 chr11 45129909 45130331 -76713525 - MTC LTR MaLR -8 413 1 2 929 22 35 0 0 chr11 45131314 45131343 -76712513 + AT_rich Low_complexity Low_complexity 1 29 0 2 929 3483 23 5 0 chr11 45131948 45132335 -76711521 + L1Md_F2 LINE L1 6192 6580 -2 2 929 493 136 0 20 chr11 45132784 45132795 -76711061 + polypyrimidine Low_complexity Low_complexity 87 97 0 2 929 1298 73 0 6 chr11 45132795 45132975 -76710881 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 2 929 493 136 0 20 chr11 45132975 45133061 -76710795 + CT-rich Low_complexity Low_complexity 3 86 0 2 929 429 20 0 0 chr11 45133061 45133111 -76710745 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 929 319 268 103 83 chr11 45133202 45133392 -76710464 - B4A SINE B4 -64 228 4 2 929 288 278 28 83 chr11 45133932 45134107 -76709749 + Kanga11a DNA Tc2 873 970 0 2 929 21 0 0 0 chr11 45134482 45134503 -76709353 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 242 269 0 15 chr11 45134789 45134857 -76708999 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 929 216 0 0 0 chr11 45136228 45136252 -76707604 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 929 304 274 80 66 chr11 45136544 45136681 -76707175 - HAL1-3A_ME LINE L1 -745 2113 1975 2 929 225 290 14 14 chr11 45136744 45136814 -76707042 + GA-rich Low_complexity Low_complexity 3 72 0 2 929 987 75 0 0 chr11 45136907 45137053 -76706803 + (TC)n Simple_repeat Simple_repeat 1 146 0 2 929 456 298 6 44 chr11 45137989 45138015 -76705841 + ID_B1 SINE B4 70 218 -3 2 929 583 279 8 0 chr11 45138015 45138144 -76705712 + B1F SINE Alu 14 143 -6 2 929 446 290 200 6 chr11 45138152 45138463 -76705393 - MTEb LTR MaLR -8 371 1 2 929 230 316 80 36 chr11 45139039 45139177 -76704679 - B1_Mus1 SINE Alu 0 148 5 2 929 549 64 0 0 chr11 45139459 45139537 -76704319 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 929 688 298 0 6 chr11 45139547 45139706 -76704150 - B3A SINE B2 -38 160 3 2 929 704 302 91 38 chr11 45140529 45140901 -76702955 - L1MD3 LINE L1 -37 7958 7567 2 929 654 286 52 5 chr11 45142621 45142832 -76701024 + MER58A DNA MER1_type 1 221 -3 2 929 21 0 0 0 chr11 45144428 45144449 -76699407 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 198 71 0 0 chr11 45144735 45144763 -76699093 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 929 200 281 15 59 chr11 45145345 45145413 -76698443 - L2c LINE L2 -57 3330 3266 2 929 274 278 109 20 chr11 45146095 45146242 -76697614 - MER33 DNA MER1_type -71 253 94 2 929 484 292 14 134 chr11 45146252 45146470 -76697386 - B4 SINE B4 -7 285 94 2 929 459 0 0 0 chr11 45146476 45146527 -76697329 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 929 441 0 0 0 chr11 45147668 45147717 -76696139 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 929 258 383 39 0 chr11 45148002 45148156 -76695700 + MER5A DNA MER1_type 2 161 -28 2 929 3904 72 2 10 chr11 45151011 45151490 -76692366 - MT2C_Mm LTR ERVL 0 475 1 2 929 1801 203 50 17 chr11 45151657 45152018 -76691838 + Lx9 LINE L1 6388 6760 -884 2 929 370 142 147 26 chr11 45152697 45152813 -76691043 - Lx LINE L1 0 6654 6525 2 929 638 291 0 0 chr11 45152827 45152954 -76690902 + RSINE1 SINE B4 14 140 -25 2 929 228 308 0 0 chr11 45153778 45153843 -76690013 - MIRb SINE MIR -24 244 180 2 929 1097 269 55 32 chr11 45154382 45154728 -76689128 - ORR1E LTR MaLR -2 357 4 2 929 320 41 0 39 chr11 45154820 45154871 -76688985 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 2 929 863 36 9 0 chr11 45154872 45154983 -76688873 - B1_Mus1 SINE Alu 0 148 37 2 929 305 198 114 80 chr11 45154915 45155003 -76688853 - RLTR25A LTR ERVK -521 582 492 2 929 234 0 0 0 chr11 45155285 45155311 -76688545 + (T)n Simple_repeat Simple_repeat 1 26 0 2 929 275 212 70 12 chr11 45155391 45155477 -76688379 - L1MD LINE L1 -2370 5625 5535 2 929 896 250 96 39 chr11 45155897 45156313 -76687543 + L1MB5 LINE L1 4011 4450 -1696 2 929 1302 138 57 5 chr11 45156399 45156610 -76687246 - URR1A DNA MER1_type 0 226 5 2 929 2298 221 46 21 chr11 45156637 45157156 -76686700 + RMER15 LTR ERVL 44 575 0 2 929 1908 280 117 18 chr11 45157158 45158692 -76685164 + L1MB5 LINE L1 4448 6141 -37 2 929 266 214 0 125 chr11 45158779 45158859 -76684997 + RMER19B LTR ERVK 309 378 -524 2 929 22 56 0 0 chr11 45159806 45159842 -76684014 + AT_rich Low_complexity Low_complexity 1 36 0 2 929 776 310 80 11 chr11 45159904 45160253 -76683603 + L1ME1 LINE L1 5558 5930 -249 2 929 813 271 73 114 chr11 45160649 45161044 -76682812 + MTE2a LTR MaLR 1 379 0 2 929 286 259 0 34 chr11 45161135 45161223 -76682633 + MLT1A1 LTR MaLR 324 408 0 2 929 878 101 22 0 chr11 45162244 45162382 -76681474 + (GGGGA)n Simple_repeat Simple_repeat 2 142 0 2 929 182 313 58 46 chr11 45163761 45163848 -76680008 - MIR3 SINE MIR -45 163 76 2 929 345 319 11 0 chr11 45164239 45164330 -76679526 + PB1D10 SINE Alu 1 92 -25 2 929 348 311 12 26 chr11 45164616 45164782 -76679074 - MIRb SINE MIR -70 192 28 2 929 1458 150 0 30 chr11 45165507 45165740 -76678116 - URR1A DNA MER1_type 0 226 1 2 929 243 0 0 0 chr11 45166028 45166055 -76677801 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 929 564 15 0 0 chr11 45166055 45166119 -76677737 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 929 283 309 78 62 chr11 45166167 45166360 -76677496 + MER102a DNA MER1_type 73 268 -62 2 929 212 130 43 0 chr11 45168071 45168117 -76675739 + A-rich Low_complexity Low_complexity 4 51 0 2 929 615 27 0 0 chr11 45168392 45168465 -76675391 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 929 468 381 49 54 chr11 45169143 45169512 -76674344 - LTR16C LTR ERVL -110 379 13 2 929 1150 59 0 7 chr11 45169958 45170094 -76673762 + B1_Mm SINE Alu 1 135 -12 2 929 952 72 7 7 chr11 45170094 45170233 -76673623 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 2 929 345 24 0 0 chr11 45170350 45170392 -76673464 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 929 3468 185 106 84 chr11 45172701 45173072 -76670784 + RMER17B LTR ERVK 1 429 -529 2 929 492 48 0 0 chr11 45173072 45173135 -76670721 + (TCCCC)n Simple_repeat Simple_repeat 4 66 0 2 929 3468 185 106 84 chr11 45173135 45173696 -76670160 + RMER17B LTR ERVK 430 954 -4 2 929 244 322 0 91 chr11 45173992 45174091 -76669765 - B1F1 SINE Alu -1 148 59 2 929 27 29 0 0 chr11 45174211 45174245 -76669611 + AT_rich Low_complexity Low_complexity 1 34 0 2 929 606 283 34 27 chr11 45174490 45174639 -76669217 - B3A SINE B2 -46 152 3 2 929 242 386 28 21 chr11 45174709 45174852 -76669004 - MIRb SINE MIR -62 206 63 2 929 184 290 58 0 chr11 45175310 45175379 -76668477 + L3 LINE CR1 4203 4275 -214 2 929 180 125 0 0 chr11 45177100 45177132 -76666724 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 2 929 369 322 0 32 chr11 45177189 45177282 -76666574 + ID_B1 SINE B4 1 90 -134 2 929 323 266 116 27 chr11 45177383 45177495 -76666361 + RSINE1 SINE B4 2 123 -42 2 929 1289 303 34 70 chr11 45177525 45178135 -76665721 + Lx8 LINE L1 6732 7319 -154 2 929 1075 265 78 80 chr11 45178555 45178879 -76664977 + MTE2a LTR MaLR 2 323 -96 2 929 1763 207 93 10 chr11 45178879 45179265 -76664591 - MTD LTR MaLR 0 419 2 2 929 1075 241 82 78 chr11 45179265 45179348 -76664508 + MTE2a LTR MaLR 285 379 0 2 929 390 269 70 17 chr11 45179367 45179591 -76664265 + L1MD LINE L1 2210 2437 -3709 2 929 3415 26 39 0 chr11 45179591 45179972 -76663884 + MTA_Mm LTR MaLR 1 396 0 2 929 390 305 65 51 chr11 45179972 45180197 -76663659 + L1MD LINE L1 2438 2666 -3480 2 929 533 228 37 12 chr11 45180546 45180710 -76663146 + Lx9 LINE L1 7477 7644 0 2 929 1938 200 44 5 chr11 45180817 45181206 -76662650 - MTC LTR MaLR 0 421 9 2 929 36228 35 1 0 chr11 45181287 45187138 -76656718 + L1Md_T LINE L1 1 5589 -297 2 929 9550 7 0 0 chr11 45187138 45188134 -76655722 + L1Md_T LINE L1 5590 6585 0 2 929 1210 75 0 0 chr11 45188153 45188299 -76655557 + B1_Mm SINE Alu 2 147 0 2 929 180 0 0 0 chr11 45188299 45188319 -76655537 + (A)n Simple_repeat Simple_repeat 1 20 0 2 929 295 255 107 10 chr11 45188322 45188425 -76655431 + L1MD LINE L1 4920 5032 -1114 2 929 486 341 86 26 chr11 45189042 45189310 -76654546 + MER2 DNA MER2_type 44 327 -18 2 929 22 0 0 0 chr11 45190046 45190068 -76653788 + AT_rich Low_complexity Low_complexity 1 22 0 2 929 288 77 0 0 chr11 45190127 45190166 -76653690 + (T)n Simple_repeat Simple_repeat 1 39 0 2 929 258 32 0 0 chr11 45190323 45190354 -76653502 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 929 4151 263 85 33 chr11 45190732 45192024 -76651832 + Lx9 LINE L1 6103 7461 -183 2 929 214 95 48 0 chr11 45192026 45192068 -76651788 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 929 222 265 0 56 chr11 45192320 45192392 -76651464 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 2 929 422 252 202 33 chr11 45192433 45192765 -76651091 + L1MC3 LINE L1 1530 1917 -4591 2 929 424 289 70 80 chr11 45192840 45192933 -76650923 + L1MC3 LINE L1 2052 2133 -4375 2 929 540 306 14 0 chr11 45192933 45193080 -76650776 - B1F SINE Alu 0 149 1 2 929 530 274 55 45 chr11 45193080 45193432 -76650424 + L1MC3 LINE L1 2134 2497 -3824 2 929 641 274 37 9 chr11 45193525 45193742 -76650114 + Tigger5 DNA MER2_type 2136 2358 -48 2 929 2823 243 73 14 chr11 45193770 45194679 -76649177 + L1MC3 LINE L1 2511 3472 -2849 2 929 632 259 71 60 chr11 45194673 45195039 -76648817 + L1MC3 LINE L1 3914 4283 -2038 2 929 490 250 121 0 chr11 45195050 45195174 -76648682 - MLT1A0 LTR MaLR -22 343 205 2 929 1942 244 114 53 chr11 45195177 45195929 -76647927 - L1_Rod LINE L1 -1031 4816 4019 2 929 417 343 85 5 chr11 45195929 45196128 -76647728 - MLT1A0 LTR MaLR -142 223 9 2 929 988 298 130 37 chr11 45196142 45197134 -76646722 + L1MC3 LINE L1 4283 5366 -955 2 929 4132 226 68 15 chr11 45197141 45198097 -76645759 - Lx9 LINE L1 -467 7177 6171 2 929 2449 138 68 3 chr11 45198118 45198488 -76645368 - ORR1B1 LTR MaLR 0 394 1 2 929 814 64 0 9 chr11 45198488 45198599 -76645257 - ORR1B1-int LTR MaLR 0 1509 1400 2 929 1522 142 73 36 chr11 45198596 45198926 -76644930 + MTB_Mm-int LTR MaLR 917 1258 0 2 929 2227 176 18 18 chr11 45198928 45199322 -76644534 + MTB_Mm LTR MaLR 3 396 -11 2 929 1719 166 14 0 chr11 45199342 45199632 -76644224 + Lx9 LINE L1 7209 7502 -142 2 929 2080 123 40 40 chr11 45199639 45199968 -76643888 + ORR1A4 LTR MaLR 1 329 0 3 929 369 0 0 0 chr11 45199973 45200014 -76643842 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 929 838 48 0 0 chr11 45200044 45200147 -76643709 + B1_Mus2 SINE Alu 43 145 -2 3 929 427 172 111 8 chr11 45200147 45200264 -76643592 + Lx9 LINE L1 7515 7643 -1 2 929 1041 290 63 84 chr11 45200378 45200865 -76642991 + L1MC3 LINE L1 5511 6002 -1958 2 929 567 291 58 19 chr11 45200865 45201019 -76642837 + RSINE1 SINE B4 3 162 -3 3 929 1041 290 63 84 chr11 45201019 45201163 -76642693 + L1MC3 LINE L1 6003 6129 -1831 2 929 647 262 7 7 chr11 45201891 45202037 -76641819 + B1F2 SINE Alu 3 148 -1 3 929 1168 257 6 52 chr11 45202131 45202455 -76641401 + MTE2a LTR MaLR 1 346 -73 3 929 348 24 0 0 chr11 45204284 45204325 -76639531 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 929 270 279 12 37 chr11 45204336 45204418 -76639438 - ID4 SINE ID -1 82 3 3 929 588 114 53 0 chr11 45204442 45204556 -76639300 + T-rich Low_complexity Low_complexity 5 124 0 3 929 423 0 0 0 chr11 45204577 45204624 -76639232 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 929 710 282 0 32 chr11 45205648 45205835 -76638021 - B3A SINE B2 -16 182 2 3 929 323 262 6 0 chr11 45206412 45206584 -76637272 + (TG)n Simple_repeat Simple_repeat 2 174 0 3 929 513 183 20 0 chr11 45206603 45206756 -76637100 + (TG)n Simple_repeat Simple_repeat 1 156 0 3 929 299 233 8 0 chr11 45206787 45206916 -76636940 + (TG)n Simple_repeat Simple_repeat 2 131 0 3 929 541 203 0 11 chr11 45206929 45207108 -76636748 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 929 251 338 0 14 chr11 45207136 45207208 -76636648 - B4 SINE B4 0 292 222 3 929 185 196 0 21 chr11 45207217 45207264 -76636592 + CT-rich Low_complexity Low_complexity 4 49 0 3 929 825 255 46 32 chr11 45207269 45207508 -76636348 - B4 SINE B4 -46 246 3 3 929 234 228 50 71 chr11 45210661 45210760 -76633096 + L2c LINE L2 3289 3385 -2 3 929 287 322 81 41 chr11 45211053 45211289 -76632567 - MIRb SINE MIR 0 268 28 3 929 269 372 156 8 chr11 45211937 45212059 -76631797 + Charlie15a DNA MER1_type 11 150 -74 3 929 3192 85 15 12 chr11 45212477 45212883 -76630973 - MTB_Mm LTR MaLR 0 407 1 3 929 6070 147 113 20 chr11 45212883 45214033 -76629823 - MTB_Mm-int LTR MaLR 0 1258 2 3 929 2972 56 88 8 chr11 45214033 45214409 -76629447 - MTB_Mm LTR MaLR 0 407 1 3 929 1481 140 97 44 chr11 45215004 45215302 -76628554 - Lx2B LINE L1 0 7000 6687 3 929 1092 235 9 23 chr11 45215524 45215742 -76628114 + B3 SINE B2 2 216 0 3 929 212 371 23 31 chr11 45216938 45217066 -76626790 - MIR SINE MIR -45 217 91 3 929 249 33 0 0 chr11 45218517 45218547 -76625309 + (T)n Simple_repeat Simple_repeat 1 30 0 3 929 252 292 154 62 chr11 45218815 45219023 -76624833 - MIRc SINE MIR -22 246 20 3 929 307 256 108 13 chr11 45219383 45219490 -76624366 - MIR SINE MIR -143 125 18 3 929 808 181 0 59 chr11 45219585 45219738 -76624118 + B1_Mur2 SINE Alu 5 148 -1 3 930 321 259 0 14 chr11 45219902 45219916 -76623940 + ID4 SINE ID 10 82 -69 3 930 289 279 0 32 chr11 45219916 45219979 -76623877 + ID SINE ID 23 83 -141 3 930 706 309 18 49 chr11 45223623 45223909 -76619947 - MER44B DNA MER2_type -6 544 268 3 930 726 96 0 0 chr11 45223929 45224033 -76619823 + MT2B LTR ERVL 1 104 -497 3 930 3463 115 46 29 chr11 45224135 45224717 -76619139 - MT2B LTR ERVL -7 594 3 3 930 3468 160 14 124 chr11 45224717 45225401 -76618455 - ORR1B1-int LTR MaLR -1370 593 3 3 930 2264 149 12 69 chr11 45225403 45225821 -76618035 - ORR1B1 LTR MaLR 0 394 1 3 930 663 312 5 27 chr11 45225825 45226049 -76617807 - MER44B DNA MER2_type -308 242 24 3 930 708 189 71 32 chr11 45226359 45226735 -76617121 - LTRIS5 LTR ERV1 0 564 1 3 930 283 135 58 0 chr11 45226736 45226788 -76617068 - MuRRS4-int LTR ERV1 -42 5021 4967 3 930 1944 191 45 35 chr11 45227186 45227890 -76615966 - MuRRS4-int LTR ERV1 -1251 3812 2536 3 930 1042 71 0 0 chr11 45227993 45228120 -76615736 - MuRRS4-int LTR ERV1 -2119 2944 2818 3 930 252 203 28 28 chr11 45228125 45228196 -76615660 + MT2B LTR ERVL 192 262 -339 3 930 243 294 32 32 chr11 45228133 45228228 -76615628 + B1F SINE Alu 47 141 -8 3 930 277 292 0 0 chr11 45228264 45228329 -76615527 + ID2 SINE ID 1 65 -18 3 930 2313 146 2 41 chr11 45228760 45229173 -76614683 - MTC LTR MaLR -24 397 1 3 930 215 315 25 75 chr11 45229405 45229525 -76614331 + PB1D10 SINE Alu 3 116 -1 3 930 200 163 0 23 chr11 45229688 45229732 -76614124 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3 930 2223 142 18 15 chr11 45229896 45230289 -76613567 + ORR1B1 LTR MaLR 1 394 0 3 930 211 162 0 26 chr11 45230289 45230327 -76613529 - RSINE1 SINE B4 -122 43 7 3 930 264 274 0 14 chr11 45230920 45230994 -76612862 - MER117 DNA MER1_type 0 197 125 3 930 309 26 0 0 chr11 45232774 45232812 -76611044 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 930 222 150 0 0 chr11 45233223 45233263 -76610593 + (T)n Simple_repeat Simple_repeat 1 40 0 3 930 387 0 0 0 chr11 45233345 45233388 -76610468 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 930 186 372 54 20 chr11 45233783 45233931 -76609925 + MIRb SINE MIR 103 255 -13 3 930 853 190 121 29 chr11 45234307 45234513 -76609343 + URR1B DNA MER1_type 1 225 0 3 930 7335 53 15 2 chr11 45235080 45235990 -76607866 + L1Md_F2 LINE L1 5652 6573 -9 3 930 246 276 59 30 chr11 45236387 45236488 -76607368 + MLT2B2 LTR ERVL 6 109 -406 3 930 252 282 24 113 chr11 45236696 45236820 -76607036 + MTEa LTR MaLR 241 353 -26 3 930 606 324 0 6 chr11 45237005 45237188 -76606668 + B3A SINE B2 1 182 -16 3 930 6393 117 17 18 chr11 45237192 45238176 -76605680 + RLTR13C1 LTR ERVK 1 983 0 3 930 230 268 23 47 chr11 45238557 45238643 -76605213 - L1MEd LINE L1 -5063 1056 973 3 930 252 0 0 0 chr11 45238711 45238739 -76605117 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 930 263 356 67 0 chr11 45238753 45238857 -76604999 + PB1D10 SINE Alu 1 111 -6 3 930 6257 89 82 11 chr11 45239073 45239724 -76604132 + Lx3_Mus LINE L1 6019 6734 -275 3 930 4004 62 20 2 chr11 45239724 45240227 -76603629 + RLTR1B LTR ERV1 1 512 0 3 930 6257 89 82 11 chr11 45240227 45240498 -76603358 + Lx3_Mus LINE L1 6735 7007 -2 3 930 351 127 0 0 chr11 45240540 45240603 -76603253 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 930 186 209 0 0 chr11 45240602 45240645 -76603211 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 930 346 248 8 0 chr11 45241394 45241511 -76602345 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 930 272 269 60 0 chr11 45241526 45241593 -76602263 - ID4_ SINE ID -11 72 2 3 930 235 274 69 121 chr11 45241646 45241762 -76602094 + PB1D7 SINE Alu 14 123 -26 3 930 276 30 0 0 chr11 45241946 45241979 -76601877 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 930 223 245 19 0 chr11 45241982 45242035 -76601821 + MIR3 SINE MIR 111 164 -44 3 930 1155 243 50 45 chr11 45242376 45242547 -76601309 - ORR1E LTR MaLR 0 359 198 3 930 498 46 0 0 chr11 45242547 45242612 -76601244 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 930 1155 243 50 45 chr11 45242612 45242797 -76601059 - ORR1E LTR MaLR -162 197 2 3 930 309 325 0 0 chr11 45243789 45243869 -76599987 + RSINE1 SINE B4 55 134 -31 3 930 324 0 0 0 chr11 45243871 45243907 -76599949 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 3 930 312 306 35 0 chr11 45243933 45244018 -76599838 + B1F SINE Alu 1 88 -61 3 930 302 250 32 79 chr11 45244251 45244377 -76599479 + MLT1H LTR MaLR 420 539 -10 3 930 511 278 28 28 chr11 45245112 45245293 -76598563 + B3A SINE B2 1 181 -17 3 930 189 0 0 0 chr11 45246236 45246257 -76597599 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 930 250 274 98 119 chr11 45246363 45246668 -76597188 + MTEb LTR MaLR 18 361 -18 3 930 306 0 0 0 chr11 45247135 45247169 -76596687 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 930 1337 94 0 11 chr11 45247837 45248013 -76595843 - L1_Mus1 LINE L1 -293 6274 6099 3 930 2505 50 0 0 chr11 45248013 45248312 -76595544 + L1_Mus1 LINE L1 6269 6567 0 3 930 248 286 16 37 chr11 45248649 45248738 -76595118 + MTEa LTR MaLR 256 345 -34 3 930 23 0 0 0 chr11 45249001 45249024 -76594832 + AT_rich Low_complexity Low_complexity 1 23 0 3 930 501 245 0 0 chr11 45249086 45249192 -76594664 - PB1D9 SINE Alu -6 114 9 3 930 1375 80 11 0 chr11 45249272 45249459 -76594397 - B2_Mm1t SINE B2 -3 190 2 3 930 562 125 0 79 chr11 45250611 45250776 -76593080 + GA-rich Low_complexity Low_complexity 4 155 0 3 930 744 302 53 33 chr11 45252333 45252634 -76591222 + Lx7 LINE L1 7112 7418 -278 3 930 35 63 0 0 chr11 45252693 45252756 -76591100 + AT_rich Low_complexity Low_complexity 1 63 0 3 930 298 337 72 68 chr11 45253998 45254262 -76589594 + B4 SINE B4 5 269 -23 3 930 1182 47 0 0 chr11 45254264 45254413 -76589443 + (CA)n Simple_repeat Simple_repeat 1 149 0 3 930 22 0 0 0 chr11 45254891 45254913 -76588943 + AT_rich Low_complexity Low_complexity 1 22 0 3 930 263 220 33 17 chr11 45256123 45256183 -76587673 + Lx8 LINE L1 7129 7189 -284 3 930 180 0 0 0 chr11 45256636 45256656 -76587200 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 930 417 145 0 0 chr11 45256796 45256872 -76586984 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 930 704 267 36 0 chr11 45256894 45257059 -76586797 - B3A SINE B2 -26 172 2 3 930 540 334 75 23 chr11 45257608 45257954 -76585902 - MLT1L LTR MaLR -99 511 148 3 930 1054 270 42 18 chr11 45257954 45258286 -76585570 - MER58B DNA MER1_type -1 340 1 3 930 617 343 14 5 chr11 45258425 45258633 -76585223 - ID_B1 SINE B4 -13 211 2 3 930 710 242 148 0 chr11 45259558 45259740 -76584116 - B3 SINE B2 -6 210 2 3 930 1988 90 0 69 chr11 45260996 45261329 -76582527 + ORR1A4 LTR MaLR 20 329 0 3 930 681 201 22 0 chr11 45264207 45264341 -76579515 - B1_Mur1 SINE Alu -1 148 12 3 930 1225 42 0 0 chr11 45264343 45264487 -76579369 + B1_Mus2 SINE Alu 4 147 0 3 930 330 352 103 49 chr11 45265441 45265618 -76578238 - MER20 DNA MER1_type -2 217 29 3 930 315 0 0 0 chr11 45265618 45265653 -76578203 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 930 330 352 103 49 chr11 45265653 45265678 -76578178 - MER20 DNA MER1_type -191 28 4 3 930 558 0 0 0 chr11 45266013 45266075 -76577781 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 3 930 252 0 0 0 chr11 45266077 45266105 -76577751 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 3 930 866 134 13 0 chr11 45266105 45266254 -76577602 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 4 930 340 237 41 6 chr11 45266864 45267034 -76576822 + GA-rich Low_complexity Low_complexity 4 179 0 4 930 254 230 0 26 chr11 45267072 45267148 -76576708 + G-rich Low_complexity Low_complexity 5 78 0 4 930 264 284 14 0 chr11 45267199 45267273 -76576583 + GA-rich Low_complexity Low_complexity 2 76 0 4 930 400 265 0 109 chr11 45267621 45267731 -76576125 + B4 SINE B4 66 163 -129 4 930 324 232 90 48 chr11 45269667 45269800 -76574056 + MLT1A0 LTR MaLR 265 360 -5 4 930 340 258 70 38 chr11 45269980 45270137 -76573719 - MER57C2 LTR ERV1 -9 425 264 4 930 260 286 87 56 chr11 45270201 45270327 -76573529 - MER57C2 LTR ERV1 -261 150 21 4 930 1029 110 0 0 chr11 45271543 45271697 -76572159 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 4 930 209 269 0 0 chr11 45272592 45272644 -76571212 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 930 419 17 52 0 chr11 45272923 45272981 -76570875 + (TTTTA)n Simple_repeat Simple_repeat 2 62 0 4 930 406 240 74 13 chr11 45274195 45274316 -76569540 + B1F SINE Alu 9 132 -16 4 930 25 31 0 0 chr11 45274316 45274348 -76569508 + AT_rich Low_complexity Low_complexity 1 32 0 4 930 223 189 0 0 chr11 45274467 45274504 -76569352 - ID4 SINE ID -42 41 5 4 930 509 266 86 0 chr11 45274571 45274699 -76569157 - B1F SINE Alu -1 148 10 4 930 360 0 0 0 chr11 45274761 45274801 -76569055 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 930 329 360 13 39 chr11 45274829 45274982 -76568874 - RSINE1 SINE B4 -13 152 4 4 930 198 103 0 0 chr11 45276455 45276484 -76567372 + (T)n Simple_repeat Simple_repeat 1 29 0 4 930 184 234 43 0 chr11 45276515 45276562 -76567294 + L2c LINE L2 3188 3236 -151 4 930 379 312 92 36 chr11 45276824 45277183 -76566673 + L1ME3A LINE L1 5559 5937 -236 4 930 522 46 0 0 chr11 45277276 45277341 -76566515 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 930 211 286 18 0 chr11 45277710 45277766 -76566090 + L3 LINE CR1 4427 4483 -6 4 930 306 252 61 26 chr11 45278457 45278571 -76565285 + MLT1L LTR MaLR 479 596 -14 4 930 249 108 0 0 chr11 45279897 45279934 -76563922 + (T)n Simple_repeat Simple_repeat 1 37 0 4 930 369 0 0 0 chr11 45280753 45280794 -76563062 + (TAA)n Simple_repeat Simple_repeat 1 41 0 4 930 26 30 0 0 chr11 45280902 45280935 -76562921 + AT_rich Low_complexity Low_complexity 1 33 0 4 930 636 291 21 11 chr11 45280954 45281145 -76562711 - MER2 DNA MER2_type -6 339 147 4 930 2706 172 14 106 chr11 45281386 45282049 -76561807 + RMER20B LTR ERVK 1 602 -25 4 930 234 0 0 0 chr11 45282115 45282141 -76561715 + (A)n Simple_repeat Simple_repeat 1 26 0 4 930 261 270 153 33 chr11 45283018 45283259 -76560597 + L1MD LINE L1 3671 3940 -2206 4 930 1160 50 0 0 chr11 45283332 45283471 -76560385 + B1_Mus1 SINE Alu 1 139 -9 4 930 210 37 0 0 chr11 45283471 45283498 -76560358 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 930 21 57 0 0 chr11 45283565 45283600 -76560256 + AT_rich Low_complexity Low_complexity 1 35 0 4 930 255 232 62 10 chr11 45284351 45284447 -76559409 + L1MC LINE L1 3831 3931 -2215 4 930 417 20 0 0 chr11 45285700 45285750 -76558106 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 930 594 82 31 0 chr11 45286458 45286556 -76557300 + (TC)n Simple_repeat Simple_repeat 1 101 0 4 930 602 325 50 5 chr11 45286556 45286757 -76557099 - ID_B1 SINE B4 0 224 15 4 930 904 230 25 10 chr11 45287051 45287253 -76556603 + Lx7 LINE L1 7126 7330 -366 4 930 207 0 0 0 chr11 45287304 45287327 -76556529 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 930 241 272 19 52 chr11 45288119 45288274 -76555582 + GA-rich Low_complexity Low_complexity 5 154 0 4 930 230 298 23 29 chr11 45288311 45288484 -76555372 + GA-rich Low_complexity Low_complexity 5 176 0 4 930 276 137 0 0 chr11 45289305 45289356 -76554500 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 930 261 323 43 0 chr11 45290855 45290948 -76552908 + MIRm SINE MIR 180 276 0 4 930 477 0 0 0 chr11 45291145 45291198 -76552658 + (TTA)n Simple_repeat Simple_repeat 2 54 0 4 930 226 232 54 0 chr11 45291724 45291780 -76552076 - MLT1F1 LTR MaLR -290 279 221 4 930 409 208 86 23 chr11 45292172 45292300 -76551556 + MLT1A1 LTR MaLR 273 408 0 4 930 1425 58 0 5 chr11 45292445 45292634 -76551222 + L1_Mus2 LINE L1 6379 6566 0 4 930 688 88 0 0 chr11 45292951 45293053 -76550803 - Lx2 LINE L1 0 6997 6896 4 930 22 0 0 0 chr11 45293486 45293508 -76550348 + AT_rich Low_complexity Low_complexity 1 22 0 4 930 1430 255 201 30 chr11 45293861 45294144 -76549712 + Lx8 LINE L1 6815 7141 -332 4 930 368 20 20 0 chr11 45294144 45294193 -76549663 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 930 1430 255 201 30 chr11 45294193 45294472 -76549384 + Lx8 LINE L1 7142 7473 0 4 930 225 65 0 0 chr11 45294577 45294608 -76549248 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 4 930 237 272 86 0 chr11 45294832 45294913 -76548943 + MIR3 SINE MIR 89 176 -32 4 930 246 310 0 12 chr11 45294952 45295037 -76548819 + MIRc SINE MIR 154 237 -31 4 930 237 65 0 0 chr11 45295544 45295575 -76548281 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 930 315 0 0 0 chr11 45295978 45296013 -76547843 + (T)n Simple_repeat Simple_repeat 1 35 0 4 930 379 319 36 29 chr11 45296013 45296152 -76547704 + B3 SINE B2 25 164 -52 4 930 246 32 0 0 chr11 45296152 45296183 -76547673 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 930 24 32 0 0 chr11 45296214 45296245 -76547611 + AT_rich Low_complexity Low_complexity 1 31 0 4 930 295 333 33 20 chr11 45296357 45296507 -76547349 + RSINE1 SINE B4 14 165 0 4 930 396 0 0 0 chr11 45296516 45296560 -76547296 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 4 930 203 247 52 73 chr11 45298467 45298563 -76545293 + MIR SINE MIR 20 113 -95 4 930 567 357 14 18 chr11 45298712 45298989 -76544867 + B4A SINE B4 9 284 -8 4 930 276 246 55 20 chr11 45299992 45300105 -76543751 - MIRc SINE MIR -34 234 122 4 930 229 164 48 32 chr11 45301248 45301311 -76542545 - MADE2 DNA Mariner -12 68 5 4 930 862 276 15 0 chr11 45301430 45301626 -76542230 - B3 SINE B2 -17 199 1 4 930 2516 0 0 0 chr11 45301652 45301926 -76541930 + L1Md_T LINE L1 6309 6582 0 4 930 246 81 0 0 chr11 45302044 45302081 -76541775 + (A)n Simple_repeat Simple_repeat 1 37 0 4 930 583 259 45 45 chr11 45303001 45303268 -76540588 + Charlie5 DNA MER1_type 2343 2609 -15 4 930 792 246 102 15 chr11 45303550 45303814 -76540042 - B4A SINE B4 -5 287 1 4 930 547 290 26 42 chr11 45304283 45304474 -76539382 - B3A SINE B2 -5 193 6 4 930 321 309 25 57 chr11 45304511 45304669 -76539187 - MER20 DNA MER1_type -14 205 53 4 930 180 0 0 0 chr11 45305047 45305067 -76538789 + (G)n Simple_repeat Simple_repeat 1 20 0 4 930 908 197 50 41 chr11 45306076 45306394 -76537462 - RMER17C LTR ERVK -5 405 85 4 930 591 206 27 95 chr11 45306369 45306632 -76537224 - RMER17C LTR ERVK -164 246 2 4 930 839 301 92 35 chr11 45306803 45307237 -76536619 - MLT1D LTR MaLR -1 504 46 4 930 327 164 0 0 chr11 45307501 45307562 -76536294 + GA-rich Low_complexity Low_complexity 2 62 0 4 930 714 196 0 15 chr11 45307577 45307712 -76536144 + B3A SINE B2 3 135 -63 4 930 468 0 0 0 chr11 45308317 45308369 -76535487 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 930 471 130 0 0 chr11 45308369 45308445 -76535411 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 930 502 252 30 8 chr11 45309763 45309895 -76533961 - B1F1 SINE Alu -14 135 1 4 930 308 283 178 0 chr11 45310319 45310471 -76533385 + MIR SINE MIR 29 207 -55 4 930 439 278 17 143 chr11 45310554 45310785 -76533071 - B4 SINE B4 -6 286 85 4 930 10101 122 15 4 chr11 45312172 45313747 -76530109 + Lx4A LINE L1 5460 7057 -1 4 930 302 331 80 45 chr11 45313748 45314175 -76529681 - L2 LINE L2 -789 2630 2189 4 930 1021 251 40 50 chr11 45314225 45314502 -76529354 + B4 SINE B4 1 274 -18 4 930 205 266 84 11 chr11 45314561 45314656 -76529200 - L2 LINE L2 -1394 2025 1924 4 930 327 161 21 21 chr11 45315283 45315378 -76528478 + C-rich Low_complexity Low_complexity 4 98 0 4 930 292 319 48 21 chr11 45315420 45315606 -76528250 + MIRb SINE MIR 76 266 -2 4 930 1023 205 49 0 chr11 45316602 45316807 -76527049 - B3 SINE B2 -1 215 1 4 930 355 240 0 7 chr11 45317033 45317136 -76526720 + ID4 SINE ID 4 103 -49 4 930 551 264 39 6 chr11 45318189 45318345 -76525511 + RSINE1 SINE B4 3 163 -2 4 930 297 367 93 34 chr11 45318867 45319104 -76524752 - MLT1J2 LTR MaLR 0 448 198 4 930 271 347 94 13 chr11 45319734 45319883 -76523973 - MLT1J2 LTR MaLR -287 161 1 4 930 245 111 0 62 chr11 45319966 45320014 -76523842 - MLT2B2 LTR ERVL -408 107 63 4 930 1282 109 22 5 chr11 45320059 45320243 -76523613 + B2_Mm2 SINE B2 1 187 -8 4 930 307 269 128 9 chr11 45320469 45320578 -76523278 - MIRc SINE MIR -86 182 61 4 930 223 254 152 0 chr11 45320641 45320700 -76523156 - ID4 SINE ID -14 69 2 4 930 239 374 16 16 chr11 45321025 45321150 -76522706 + L2b LINE L2 3248 3372 -3 4 930 233 242 9 147 chr11 45321579 45321695 -76522161 + ID_B1 SINE B4 55 154 -70 4 930 311 45 0 22 chr11 45321839 45321885 -76521971 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 930 704 190 0 6 chr11 45322456 45322615 -76521241 + GA-rich Low_complexity Low_complexity 1 158 0 4 930 365 144 33 11 chr11 45322670 45322761 -76521095 + G-rich Low_complexity Low_complexity 2 94 0 4 930 410 128 32 11 chr11 45322825 45322920 -76520936 + G-rich Low_complexity Low_complexity 3 99 0 4 930 962 248 151 24 chr11 45323721 45324093 -76519763 - MTD LTR MaLR 0 419 1 4 930 2811 31 0 0 chr11 45324267 45324586 -76519270 - L1_Mm LINE L1 -60 5823 5505 5 930 3042 53 0 3 chr11 45324586 45324963 -76518893 + L1Md_F2 LINE L1 6207 6582 0 5 930 636 315 77 42 chr11 45325034 45325293 -76518563 + B4A SINE B4 1 268 -24 5 930 2204 220 176 30 chr11 45325674 45326317 -76517539 - RMER19A LTR ERVK 0 737 1 5 930 304 342 54 0 chr11 45326951 45327062 -76516794 - MER20 DNA MER1_type -10 209 93 5 930 191 227 87 43 chr11 45327132 45327201 -76516655 + MIRc SINE MIR 100 171 -91 5 930 453 84 0 0 chr11 45327671 45327742 -76516114 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 5 930 1417 253 83 5 chr11 45329444 45329888 -76513968 - Lx8 LINE L1 -1536 5937 5462 5 930 1466 279 100 8 chr11 45329898 45330396 -76513460 + Lx8 LINE L1 6902 7445 -28 5 930 903 154 0 0 chr11 45330762 45331120 -76512736 + (TG)n Simple_repeat Simple_repeat 1 358 0 5 930 765 153 0 0 chr11 45331135 45331311 -76512545 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 930 822 140 0 0 chr11 45331329 45331508 -76512348 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 930 935 225 51 51 chr11 45331556 45331832 -76512024 - B4A SINE B4 -12 280 5 5 930 324 290 99 71 chr11 45331887 45332028 -76511828 - B3A SINE B2 -53 145 1 5 930 240 321 9 60 chr11 45332131 45332247 -76511609 - MER20 DNA MER1_type -83 136 27 5 930 296 143 18 0 chr11 45332669 45332725 -76511131 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 930 183 304 62 25 chr11 45333782 45333863 -76509993 - MIRc SINE MIR -166 102 19 5 930 280 242 0 16 chr11 45334510 45334573 -76509283 - MLT1A0 LTR MaLR -56 309 248 5 930 318 271 8 76 chr11 45335534 45335666 -76508190 - MLT1A LTR MaLR -26 348 226 5 930 248 188 9 47 chr11 45336594 45336700 -76507156 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 5 930 432 200 17 40 chr11 45336756 45336933 -76506923 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 5 930 327 49 0 0 chr11 45337757 45337798 -76506058 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 930 276 127 0 0 chr11 45338010 45338065 -76505791 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 930 282 271 14 0 chr11 45339117 45339187 -76504669 - ID4_ SINE ID -10 73 3 5 930 253 291 51 68 chr11 45340085 45340203 -76503653 + MLT1A1 LTR MaLR 293 408 0 5 930 946 226 68 125 chr11 45340309 45340693 -76503163 - MTE2a LTR MaLR -17 362 1 5 930 651 233 46 77 chr11 45341065 45341260 -76502596 + B3A SINE B2 7 195 -3 5 930 313 343 36 60 chr11 45341547 45341932 -76501924 + L1M7 LINE L1 1131 1506 -4712 5 930 450 258 8 62 chr11 45342048 45342176 -76501680 + B4A SINE B4 2 122 -170 5 930 286 286 26 0 chr11 45342222 45342299 -76501557 + RSINE1 SINE B4 87 165 0 5 930 243 375 36 14 chr11 45342693 45342831 -76501025 + L1MC5 LINE L1 6644 6784 -1177 5 930 3372 34 27 5 chr11 45342899 45343310 -76500546 + L1Md_F2 LINE L1 6162 6581 -1 5 930 1183 62 0 0 chr11 45343538 45343684 -76500172 + B1_Mus1 SINE Alu 1 146 -2 5 930 351 0 0 0 chr11 45343807 45343846 -76500010 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 930 1126 89 0 0 chr11 45343850 45344008 -76499848 - B2_Mm2 SINE B2 -37 158 1 5 930 984 224 93 8 chr11 45344135 45344382 -76499474 - MTC LTR MaLR -153 268 1 5 930 246 252 134 45 chr11 45344386 45344498 -76499358 + RSINE1 SINE B4 11 132 -33 5 930 520 275 144 75 chr11 45345230 45345576 -76498280 - Lx8 LINE L1 -1 7472 7103 5 930 23 0 0 0 chr11 45345882 45345905 -76497951 + AT_rich Low_complexity Low_complexity 1 23 0 5 930 291 214 0 0 chr11 45346074 45346144 -76497712 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 5 930 774 198 0 0 chr11 45346191 45346368 -76497488 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 5 930 213 275 0 42 chr11 45347235 45347298 -76496558 - MIRc SINE MIR -112 156 95 5 930 749 193 169 11 chr11 45347298 45347481 -76496375 + B3 SINE B2 2 213 -3 5 930 189 147 29 0 chr11 45347648 45347682 -76496174 - MIRc SINE MIR -111 157 123 5 930 270 298 180 35 chr11 45347849 45348110 -76495746 - LTR33 LTR ERVL -173 342 44 5 930 444 263 0 0 chr11 45348552 45348704 -76495152 + (CA)n Simple_repeat Simple_repeat 2 153 0 5 930 423 38 0 0 chr11 45349673 45349726 -76494130 + (TTG)n Simple_repeat Simple_repeat 2 54 0 5 930 313 267 164 22 chr11 45349923 45350057 -76493799 - MIRb SINE MIR -32 236 84 5 930 330 26 0 0 chr11 45350592 45350631 -76493225 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 931 631 265 54 0 chr11 45350976 45351142 -76492714 - B4 SINE B4 -20 272 98 5 931 267 196 77 86 chr11 45351161 45351278 -76492578 - BC1_Mm scRNA scRNA -36 116 1 5 931 206 32 0 31 chr11 45351357 45351389 -76492467 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 5 931 206 237 17 0 chr11 45351928 45351987 -76491869 + CT-rich Low_complexity Low_complexity 6 65 0 5 931 435 162 0 0 chr11 45352728 45352827 -76491029 + CT-rich Low_complexity Low_complexity 2 100 0 5 931 564 15 0 0 chr11 45352838 45352903 -76490953 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 931 282 347 16 8 chr11 45354952 45355074 -76488782 + MIR SINE MIR 70 192 -70 5 931 183 282 79 45 chr11 45355710 45355799 -76488057 - MIRc SINE MIR -111 157 66 5 931 527 316 38 13 chr11 45357142 45357277 -76486579 + B3A SINE B2 6 144 -54 5 931 231 61 0 0 chr11 45357277 45357310 -76486546 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 931 527 316 38 13 chr11 45357310 45357331 -76486525 + B3A SINE B2 145 166 -32 5 931 33 43 0 0 chr11 45357331 45357378 -76486478 + AT_rich Low_complexity Low_complexity 1 47 0 5 931 198 71 0 0 chr11 45357469 45357497 -76486359 + (CCCCAG)n Simple_repeat Simple_repeat 3 30 0 5 931 442 326 81 22 chr11 45358869 45359142 -76484714 - B4A SINE B4 -3 289 1 5 931 232 284 103 28 chr11 45359187 45359344 -76484512 - MIRb SINE MIR 0 268 96 5 931 251 122 20 0 chr11 45361383 45361432 -76482424 + (CCA)n Simple_repeat Simple_repeat 1 50 0 5 931 334 197 26 0 chr11 45361810 45361886 -76481970 - ID_B1 SINE B4 -6 218 141 5 931 303 279 57 9 chr11 45363158 45363263 -76480593 - PB1D7 SINE Alu -2 118 9 5 931 234 265 0 0 chr11 45363329 45363378 -76480478 + (TATG)n Simple_repeat Simple_repeat 2 50 0 5 931 622 267 0 8 chr11 45365431 45365563 -76478293 + B4 SINE B4 161 291 -1 5 931 405 298 15 0 chr11 45365757 45365888 -76477968 + MIR SINE MIR 129 261 -1 5 931 22 0 0 0 chr11 45366442 45366464 -76477392 + AT_rich Low_complexity Low_complexity 1 22 0 5 931 457 220 250 0 chr11 45367038 45367170 -76476686 + RSINE1 SINE B4 1 165 0 5 931 1134 52 0 0 chr11 45367213 45367348 -76476508 + B1_Mus2 SINE Alu 1 135 -12 5 931 291 28 0 0 chr11 45367348 45367384 -76476472 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 931 239 348 80 32 chr11 45367694 45367881 -76475975 + MLT2D LTR ERVL 1 196 -218 5 931 1450 225 47 0 chr11 45367898 45368218 -76475638 + ORR1D1 LTR MaLR 40 374 0 5 931 759 179 0 0 chr11 45368222 45368401 -76475455 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 931 695 150 0 7 chr11 45368432 45368573 -76475283 + (TG)n Simple_repeat Simple_repeat 2 141 0 5 931 228 186 42 143 chr11 45368623 45368742 -76475114 - MLT1K LTR MaLR -72 523 417 5 931 407 276 71 52 chr11 45368916 45369126 -76474730 + L2a LINE L2 3110 3323 -103 5 931 413 261 176 5 chr11 45370912 45371118 -76472738 - B4A SINE B4 -50 242 1 5 931 561 99 0 0 chr11 45371304 45371385 -76472471 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 931 200 316 65 60 chr11 45371540 45371708 -76472148 + MIRb SINE MIR 82 250 -18 5 931 279 114 0 0 chr11 45373213 45373257 -76470599 + (ATG)n Simple_repeat Simple_repeat 2 45 0 5 931 311 206 193 0 chr11 45373267 45373397 -76470459 + B3 SINE B2 3 181 -35 5 931 288 127 0 0 chr11 45373397 45373452 -76470404 + (CATA)n Simple_repeat Simple_repeat 4 58 0 5 931 240 277 205 0 chr11 45373452 45373469 -76470387 + B3 SINE B2 182 198 -18 5 931 2091 249 47 24 chr11 45374396 45374948 -76468908 + Lx8 LINE L1 6772 7336 -137 5 931 446 117 63 0 chr11 45374963 45375074 -76468782 + (CA)n Simple_repeat Simple_repeat 1 118 0 5 931 265 169 50 38 chr11 45375116 45375196 -76468660 + Lx8 LINE L1 7392 7472 -1 5 931 489 246 90 0 chr11 45375706 45375840 -76468016 + B4 SINE B4 82 227 -65 5 931 21 0 0 0 chr11 45375883 45375904 -76467952 + AT_rich Low_complexity Low_complexity 1 21 0 5 931 181 119 23 23 chr11 45375905 45375948 -76467908 + GA-rich Low_complexity Low_complexity 4 46 0 5 931 261 247 40 0 chr11 45375994 45376080 -76467776 + MIR SINE MIR 19 115 -93 5 931 329 297 0 0 chr11 45376089 45376163 -76467693 + ID4 SINE ID 1 74 -9 5 931 309 301 32 0 chr11 45376163 45376182 -76467674 + ID_B1 SINE B4 1 96 -128 5 931 811 278 5 19 chr11 45376725 45376938 -76466918 - B3 SINE B2 -6 210 1 5 931 184 339 71 0 chr11 45377288 45377415 -76466441 - L2 LINE L2 -2258 1161 1026 5 931 831 312 10 37 chr11 45377499 45377795 -76466061 + B4 SINE B4 1 288 -4 5 931 1166 70 0 0 chr11 45378235 45378378 -76465478 + B1_Mus2 SINE Alu 1 143 -4 5 931 189 0 0 0 chr11 45378380 45378401 -76465455 + (A)n Simple_repeat Simple_repeat 1 21 0 5 931 209 33 33 0 chr11 45378683 45378713 -76465143 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 931 1090 72 0 0 chr11 45378713 45378852 -76465004 - B1_Mus1 SINE Alu -9 139 1 5 931 198 0 0 0 chr11 45379595 45379617 -76464239 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 931 375 193 54 43 chr11 45379723 45379815 -76464041 - B4 SINE B4 -191 101 9 5 931 22 0 0 0 chr11 45383466 45383488 -76460368 + AT_rich Low_complexity Low_complexity 1 22 0 5 931 1000 104 15 0 chr11 45383542 45383677 -76460179 + B1_Mm SINE Alu 2 138 -9 5 931 200 195 0 0 chr11 45383817 45383858 -76459998 + GA-rich Low_complexity Low_complexity 2 42 0 5 931 204 40 0 0 chr11 45384065 45384090 -76459766 + (A)n Simple_repeat Simple_repeat 1 25 0 5 931 353 300 208 20 chr11 45384552 45384797 -76459059 - MLT1I LTR MaLR 0 411 121 6 931 4384 52 26 4 chr11 45384825 45385366 -76458490 + L1Md_F2 LINE L1 6011 6563 -19 6 931 317 43 0 21 chr11 45385399 45385447 -76458409 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 931 1322 213 44 117 chr11 45385645 45386054 -76457802 - MTE2b LTR MaLR 0 379 1 6 931 236 285 89 107 chr11 45386222 45386615 -76457241 - L1ME4a LINE L1 -158 5966 5581 6 931 186 353 0 29 chr11 45387851 45387921 -76455935 - L2a LINE L2 -14 3412 3345 6 931 866 295 6 6 chr11 45389894 45390140 -76453716 + B4 SINE B4 1 245 -47 6 931 342 98 0 0 chr11 45390142 45390193 -76453663 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 6 931 181 203 31 0 chr11 45390401 45390440 -76453416 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 6 931 189 0 0 0 chr11 45390440 45390461 -76453395 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 931 181 203 31 0 chr11 45390461 45390485 -76453371 + (CATATA)n Simple_repeat Simple_repeat 1 24 0 6 931 369 218 12 49 chr11 45390569 45390651 -76453205 + RSINE1 SINE B4 2 80 -85 6 931 648 0 0 0 chr11 45391897 45391969 -76451887 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 931 195 218 73 0 chr11 45392866 45392921 -76450935 + MIRc SINE MIR 104 162 -106 6 931 396 321 7 30 chr11 45393223 45393358 -76450498 - RSINE1 SINE B4 -31 134 3 6 931 429 20 0 0 chr11 45393719 45393769 -76450087 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 931 292 360 9 0 chr11 45393907 45394018 -76449838 + PB1D10 SINE Alu 1 112 -5 6 931 5131 38 36 0 chr11 45394038 45394710 -76449146 - L1Md_T LINE L1 0 6582 5950 6 931 207 278 0 0 chr11 45394886 45394940 -76448916 + (CATA)n Simple_repeat Simple_repeat 2 55 0 6 931 475 306 216 9 chr11 45395060 45395292 -76448564 - B4A SINE B4 -10 282 3 6 931 624 281 61 0 chr11 45396003 45396167 -76447689 + B3A SINE B2 1 174 -24 6 931 397 174 27 0 chr11 45396184 45396333 -76447523 + (TCTCTG)n Simple_repeat Simple_repeat 4 156 0 6 931 38928 12 2 7 chr11 45396430 45401635 -76442221 + L1Md_A LINE L1 413 5586 -297 6 931 9154 5 0 0 chr11 45401635 45402631 -76441225 + L1Md_A LINE L1 5587 6582 0 6 931 384 267 0 0 chr11 45403253 45403433 -76440423 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 931 437 247 6 0 chr11 45403490 45403656 -76440200 + (TG)n Simple_repeat Simple_repeat 1 167 0 6 931 621 222 0 0 chr11 45403694 45403865 -76439991 + (TG)n Simple_repeat Simple_repeat 2 172 0 6 931 317 198 12 0 chr11 45403905 45403991 -76439865 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 931 1129 164 124 0 chr11 45404181 45404382 -76439474 - URR1A DNA MER1_type 0 226 1 6 931 724 240 78 29 chr11 45404432 45404638 -76439218 + B3 SINE B2 1 216 0 6 931 691 279 89 58 chr11 45404981 45405361 -76438495 + L1MB3 LINE L1 5744 6135 -48 6 931 582 291 71 88 chr11 45405368 45405562 -76438294 + B4 SINE B4 1 189 -103 6 931 360 43 0 0 chr11 45405562 45405608 -76438248 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 931 582 291 71 88 chr11 45405608 45405710 -76438146 + B4 SINE B4 190 292 0 6 931 26 0 0 0 chr11 45405856 45405882 -76437974 + AT_rich Low_complexity Low_complexity 1 26 0 6 931 582 28 0 0 chr11 45407191 45407263 -76436593 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 931 622 296 74 23 chr11 45408525 45408781 -76435075 + MTD LTR MaLR 1 269 -150 6 931 306 50 0 0 chr11 45409263 45409303 -76434553 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 931 657 185 6 27 chr11 45411267 45411450 -76432406 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 931 514 224 6 22 chr11 45411476 45411659 -76432197 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 931 217 259 0 0 chr11 45412295 45412349 -76431507 + A-rich Low_complexity Low_complexity 1 54 0 6 931 29 28 0 0 chr11 45412607 45412643 -76431213 + AT_rich Low_complexity Low_complexity 1 36 0 6 931 195 42 0 0 chr11 45412643 45412667 -76431189 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 931 277 257 0 0 chr11 45412790 45412864 -76430992 + CT-rich Low_complexity Low_complexity 1 74 0 6 931 249 264 138 39 chr11 45412876 45413057 -76430799 - RLTR12B LTR ERVK -76 452 254 6 931 293 253 70 140 chr11 45413350 45413607 -76430249 + RMER2 LTR ERV1 329 567 0 6 931 547 281 117 29 chr11 45413633 45413838 -76430018 - ID_B1 SINE B4 0 224 2 6 931 15067 103 39 6 chr11 45415202 45418272 -76425584 + L1VL4 LINE L1 29 3162 -397 6 931 357 246 24 24 chr11 45418272 45418397 -76425459 - Zaphod DNA Tip100 -318 3713 3589 6 931 4581 86 100 0 chr11 45418399 45419119 -76424737 + L1_Mus3 LINE L1 5519 6310 -328 6 931 331 71 0 0 chr11 45419119 45419175 -76424681 + L1_Mus3 LINE L1 6576 6631 -5 6 931 691 229 34 34 chr11 45419207 45419446 -76424410 - Zaphod DNA Tip100 -198 3833 3595 6 931 22 106 0 0 chr11 45419682 45419767 -76424089 + AT_rich Low_complexity Low_complexity 1 85 0 6 931 269 311 56 0 chr11 45419770 45419860 -76423996 - ID_B1 SINE B4 -7 217 123 6 931 7567 106 20 1 chr11 45419868 45421471 -76422385 - L1_Mus3 LINE L1 0 6638 5002 6 931 38087 53 4 4 chr11 45421483 45427587 -76416269 - L1Md_F3 LINE L1 -20 6564 462 6 931 21142 147 15 5 chr11 45427588 45429286 -76414570 - L1_Mus3 LINE L1 -865 5018 3315 6 931 363 44 0 0 chr11 45429286 45429331 -76414525 + (ATTG)n Simple_repeat Simple_repeat 2 46 0 6 931 21142 146 26 5 chr11 45429331 45432187 -76411669 - L1_Mus3 LINE L1 -2569 3314 384 6 931 23 0 0 0 chr11 45432924 45432947 -76410909 + AT_rich Low_complexity Low_complexity 1 23 0 6 931 665 284 22 44 chr11 45433546 45433774 -76410082 + ID_B1 SINE B4 2 224 0 6 931 277 260 62 136 chr11 45433814 45434072 -76409784 - RMER2 LTR ERV1 0 567 329 6 931 5879 80 8 1 chr11 45434557 45435329 -76408527 + L1_Mus1 LINE L1 5788 6564 -3 6 931 234 355 71 57 chr11 45435383 45435679 -76408177 + L2a LINE L2 2945 3244 -182 6 931 358 252 173 19 chr11 45435695 45435857 -76407999 - ID_B1 SINE B4 -7 217 31 6 931 749 254 39 11 chr11 45436765 45436944 -76406912 + B3A SINE B2 1 184 -14 6 931 831 263 31 28 chr11 45436981 45437281 -76406575 + ORR1E LTR MaLR 1 368 -2 6 931 378 0 0 0 chr11 45437707 45437749 -76406107 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 931 201 191 0 0 chr11 45437779 45437821 -76406035 + MIR SINE MIR 90 131 -131 6 931 796 266 16 58 chr11 45438735 45438978 -76404878 - ORR1D2 LTR MaLR 0 370 138 6 931 3136 17 0 0 chr11 45439419 45439765 -76404091 - ORR1A0 LTR MaLR 0 346 1 6 931 527 164 9 9 chr11 45439916 45440021 -76403835 + URR1B DNA MER1_type 120 224 -1 6 931 650 215 0 7 chr11 45440028 45440164 -76403692 - ORR1D2 LTR MaLR -229 141 7 6 931 1241 47 0 0 chr11 45440213 45440361 -76403495 + B1_Mus1 SINE Alu 1 148 0 6 931 262 22 65 22 chr11 45440363 45440409 -76403447 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 6 931 820 274 62 9 chr11 45440467 45440677 -76403179 + B4 SINE B4 49 269 -23 6 931 1226 228 44 44 chr11 45440667 45441011 -76402845 + ORR1D2 LTR MaLR 27 370 0 6 931 333 0 0 0 chr11 45441027 45441064 -76402792 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 931 275 312 127 0 chr11 45441951 45442124 -76401732 + Lx8 LINE L1 7262 7456 -17 6 931 346 272 0 0 chr11 45442689 45442770 -76401086 - ID4_ SINE ID -1 82 2 6 931 617 240 98 12 chr11 45442832 45443005 -76400851 + B3 SINE B2 1 188 -28 6 931 599 232 249 6 chr11 45443132 45443305 -76400551 - B3 SINE B2 0 216 2 6 931 197 132 0 26 chr11 45443740 45443779 -76400077 + A-rich Low_complexity Low_complexity 2 39 0 6 931 243 88 0 0 chr11 45445445 45445479 -76398377 + (CATG)n Simple_repeat Simple_repeat 1 34 0 6 931 415 299 132 54 chr11 45445513 45445771 -76398085 - B4 SINE B4 -14 278 1 6 931 268 288 15 29 chr11 45446612 45446680 -76397176 + B3A SINE B2 102 168 -30 6 931 423 68 0 0 chr11 45446681 45446740 -76397116 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 931 916 130 7 27 chr11 45446760 45446910 -76396946 - B1_Mus2 SINE Alu 0 147 1 6 931 223 186 0 23 chr11 45446997 45447041 -76396815 + (TATG)n Simple_repeat Simple_repeat 1 43 0 6 931 1140 130 0 18 chr11 45447356 45447697 -76396159 + (TG)n Simple_repeat Simple_repeat 1 334 0 6 931 266 194 0 16 chr11 45447696 45447759 -76396097 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 6 931 441 127 0 0 chr11 45447767 45447846 -76396010 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 931 456 192 0 0 chr11 45449803 45449902 -76393954 + GA-rich Low_complexity Low_complexity 2 100 0 6 931 25 31 0 0 chr11 45450201 45450233 -76393623 + AT_rich Low_complexity Low_complexity 1 32 0 6 931 21 0 0 0 chr11 45450725 45450746 -76393110 + AT_rich Low_complexity Low_complexity 1 21 0 6 931 240 111 0 0 chr11 45450889 45450934 -76392922 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 6 931 386 315 40 10 chr11 45451039 45451241 -76392615 - L1ME4a LINE L1 -181 5943 5736 6 931 193 273 49 61 chr11 45451930 45452012 -76391844 + MIRb SINE MIR 109 189 -79 6 931 756 167 38 0 chr11 45452315 45452447 -76391409 - B1_Mur4 SINE Alu -7 143 7 6 931 504 261 118 0 chr11 45452489 45452650 -76391206 - B3A SINE B2 -18 180 1 6 931 1862 194 99 63 chr11 45453372 45454724 -76389132 + RMER1B Other Other 1 1055 -11 6 931 643 86 0 31 chr11 45454916 45455012 -76388844 + B1_Mus1 SINE Alu 1 93 -55 6 931 724 241 0 0 chr11 45455043 45455180 -76388676 + B1_Mur2 SINE Alu 1 137 -12 6 931 387 0 0 0 chr11 45456064 45456107 -76387749 + (T)n Simple_repeat Simple_repeat 1 43 0 6 931 654 211 22 8 chr11 45456508 45456642 -76387214 - B4 SINE B4 -155 137 2 6 931 198 250 0 16 chr11 45456649 45456710 -76387146 + MER5A DNA MER1_type 55 114 -75 6 931 219 146 0 0 chr11 45457068 45457109 -76386747 + (T)n Simple_repeat Simple_repeat 1 41 0 6 931 1484 206 90 56 chr11 45458064 45458483 -76385373 + MTD LTR MaLR 4 405 -14 6 931 832 213 108 21 chr11 45458542 45458782 -76385074 + MT2A LTR ERVL 8 268 -265 6 931 1605 132 107 7 chr11 45458778 45459067 -76384789 - ORR1B2 LTR MaLR -48 319 2 6 931 601 271 53 0 chr11 45459068 45459238 -76384618 + MT2A LTR ERVL 276 454 -79 6 931 505 211 28 101 chr11 45459245 45459424 -76384432 - Lx7 LINE L1 -18 7678 7513 7 931 698 213 179 5 chr11 45459446 45459630 -76384226 - B3 SINE B2 0 216 1 7 931 202 108 26 39 chr11 45459700 45459777 -76384079 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 7 931 910 135 13 20 chr11 45459964 45460115 -76383741 - B1_Mur4 SINE Alu 0 150 1 7 931 345 364 31 44 chr11 45460242 45460469 -76383387 + LTR16A LTR ERVL 66 289 -162 7 931 1590 148 164 0 chr11 45460605 45460923 -76382933 - ORR1B1 LTR MaLR -23 371 2 7 931 243 319 0 42 chr11 45460944 45461062 -76382794 + LTR16A LTR ERVL 330 442 -9 7 931 384 238 78 10 chr11 45461555 45461657 -76382199 + B3A SINE B2 89 197 -1 7 931 1285 242 143 111 chr11 45461727 45462243 -76381613 + MT2A LTR ERVL 1 533 0 7 931 296 342 26 0 chr11 45463338 45463452 -76380404 + PB1 SINE Alu 1 117 -10 7 931 279 0 0 0 chr11 45463452 45463483 -76380373 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 7 931 376 160 30 41 chr11 45463517 45463686 -76380170 + (CATA)n Simple_repeat Simple_repeat 2 168 0 7 931 4486 14 2 0 chr11 45463718 45464210 -76379646 + MT2_Mm LTR ERVL 1 493 0 7 931 9502 24 3 1 chr11 45464212 45465306 -76378550 + MTA_Mm-int LTR MaLR 1 1096 -2 7 931 3534 15 5 0 chr11 45465308 45465702 -76378154 + MTA_Mm LTR MaLR 1 396 0 7 931 10639 11 0 0 chr11 45465702 45466868 -76376988 + MERVL-int LTR ERVL 3 1168 -4317 7 931 14356 27 1 1 chr11 45466860 45468478 -76375378 + MERVL-int LTR ERVL 3743 5360 -125 7 931 362 167 46 35 chr11 45468478 45468565 -76375291 + ORR1A3-int LTR MaLR 553 640 -1323 7 931 321 0 0 0 chr11 45468565 45468603 -76375253 + MERVL-int LTR ERVL 5448 5485 0 7 931 4486 14 2 0 chr11 45468603 45469095 -76374761 + MT2_Mm LTR ERVL 1 493 0 7 931 219 204 0 0 chr11 45469116 45469170 -76374686 + (CATA)n Simple_repeat Simple_repeat 2 55 0 7 931 907 264 53 29 chr11 45469401 45469682 -76374174 + B4 SINE B4 1 288 -4 7 931 775 305 19 0 chr11 45471584 45471797 -76372059 - ID_B1 SINE B4 -2 222 6 7 931 442 176 0 130 chr11 45471852 45471872 -76371984 + MT2B LTR ERVL 151 153 -448 7 931 1009 83 0 0 chr11 45471872 45472016 -76371840 + B1_Mus1 SINE Alu 3 146 -2 7 931 1429 238 68 80 chr11 45472254 45472480 -76371376 - RMER19C LTR ERVK 0 611 376 7 931 216 0 0 0 chr11 45472480 45472504 -76371352 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 931 1429 238 75 91 chr11 45472504 45472831 -76371025 - RMER19C LTR ERVK -236 375 1 7 931 2008 152 20 0 chr11 45472879 45473182 -76370674 + RLTR27 LTR ERVK 1 309 0 7 931 696 41 255 0 chr11 45473231 45473329 -76370527 + IAP-d-int LTR ERVK 55 177 -6365 7 931 583 169 154 0 chr11 45473323 45473459 -76370397 + IAP-d-int LTR ERVK 347 503 -6039 7 931 2044 74 107 3 chr11 45473459 45473831 -76370025 + IAP-d-int LTR ERVK 5007 5417 -1125 7 931 1537 161 0 22 chr11 45473970 45474237 -76369619 + MMERVK10C-int LTR ERVK 7321 7581 0 7 931 2128 131 10 0 chr11 45474237 45474543 -76369313 + RLTR27 LTR ERVK 1 309 0 7 931 254 329 70 22 chr11 45474556 45474786 -76369070 + MER113 DNA MER1_type 122 362 -159 7 931 1120 258 78 22 chr11 45474799 45475156 -76368700 + MTE2b LTR MaLR 3 379 0 7 931 228 228 0 179 chr11 45475212 45475324 -76368532 + Tigger5 DNA MER2_type 37 128 -2278 7 931 292 260 160 0 chr11 45475386 45475486 -76368370 + Tigger5 DNA MER2_type 2291 2406 0 7 931 499 221 59 79 chr11 45475531 45475683 -76368173 + RSINE1 SINE B4 15 163 -2 7 931 612 316 51 41 chr11 45475836 45476229 -76367627 - LTR37A LTR ERV1 -16 410 14 7 931 704 159 114 0 chr11 45476488 45476620 -76367236 + B1_Mus2 SINE Alu 1 147 0 7 931 306 0 0 0 chr11 45476756 45476790 -76367066 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 931 267 239 0 0 chr11 45477273 45477340 -76366516 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 931 233 182 0 18 chr11 45477879 45477935 -76365921 + GA-rich Low_complexity Low_complexity 3 57 0 7 931 868 127 22 0 chr11 45478030 45478164 -76365692 + B1_Mur4 SINE Alu 1 137 -13 7 931 355 119 15 15 chr11 45478502 45478570 -76365286 + (TCC)n Simple_repeat Simple_repeat 1 68 0 7 931 201 154 0 0 chr11 45479180 45479219 -76364637 + GA-rich Low_complexity Low_complexity 3 41 0 7 931 732 287 131 19 chr11 45480215 45480581 -76363275 + L1M3 LINE L1 4916 5322 -818 7 931 467 224 34 59 chr11 45480601 45480708 -76363148 + B3A SINE B2 4 123 -75 7 931 5036 108 16 22 chr11 45480708 45481449 -76362407 - RMER19A LTR ERVK 0 737 1 7 931 467 218 26 60 chr11 45481449 45481474 -76362382 + B3A SINE B2 124 142 -56 7 931 1382 238 47 32 chr11 45481702 45481777 -76362079 + ORR1D1 LTR MaLR 3 76 -298 7 931 1227 53 0 34 chr11 45481777 45481954 -76361902 - L1Md_F2 LINE L1 0 6582 6412 7 116 1382 238 47 32 chr11 45481954 45482221 -76361635 + ORR1D1 LTR MaLR 77 349 -25 7 932 230 156 169 15 chr11 45482300 45482365 -76361491 + Lx8 LINE L1 7399 7473 0 7 932 607 255 47 83 chr11 45482399 45482426 -76361430 + L1MA4 LINE L1 5662 5685 -615 7 932 2640 55 3 15 chr11 45482426 45482757 -76361099 - ORR1A2 LTR MaLR 0 327 1 7 932 607 259 47 79 chr11 45482757 45483034 -76360822 + L1MA4 LINE L1 5686 5963 -220 7 932 963 208 19 14 chr11 45483221 45483436 -76360420 + B3 SINE B2 1 216 0 7 932 699 204 90 11 chr11 45484513 45484691 -76359165 + B3A SINE B2 1 192 -6 7 932 319 384 79 29 chr11 45485160 45485541 -76358315 + L1MC LINE L1 5382 5781 -2101 7 932 480 264 0 0 chr11 45485816 45485941 -76357915 - RSINE1 SINE B4 -38 127 3 7 932 603 357 0 54 chr11 45487259 45487337 -76356519 + Tigger7 DNA MER2_type 43 111 -2380 7 932 578 292 41 0 chr11 45487337 45487484 -76356372 + RSINE1 SINE B4 4 156 -9 7 932 525 71 0 0 chr11 45487485 45487555 -76356301 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 7 932 603 357 0 54 chr11 45487555 45487714 -76356142 + Tigger7 DNA MER2_type 112 269 -2222 7 932 578 296 85 12 chr11 45487800 45488046 -76355810 + Tigger7 DNA MER2_type 2228 2491 0 7 932 444 164 0 26 chr11 45488141 45488254 -76355602 + (TG)n Simple_repeat Simple_repeat 1 110 0 7 932 540 235 146 32 chr11 45488254 45488412 -76355444 - B4A SINE B4 0 292 117 7 932 432 37 0 0 chr11 45488499 45488553 -76355303 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 7 932 628 250 7 7 chr11 45488560 45488701 -76355155 - RSINE1 SINE B4 -22 143 3 7 932 558 258 17 0 chr11 45488797 45488917 -76354939 + RSINE1 SINE B4 4 125 -40 7 932 22 35 0 0 chr11 45488940 45488969 -76354887 + AT_rich Low_complexity Low_complexity 1 29 0 7 932 1809 250 81 111 chr11 45488970 45489395 -76354461 + RCHARR1 DNA MER1_type 81 503 -471 7 932 1179 224 93 41 chr11 45489395 45489740 -76354116 + ORR1D2 LTR MaLR 5 367 -3 7 932 1809 250 81 111 chr11 45489740 45489994 -76353862 + RCHARR1 DNA MER1_type 504 744 -230 7 932 475 225 104 99 chr11 45489994 45490186 -76353670 + B3A SINE B2 5 197 -1 7 932 1809 250 81 111 chr11 45490186 45490397 -76353459 + RCHARR1 DNA MER1_type 745 945 -29 7 932 1188 61 0 13 chr11 45490450 45490600 -76353256 + B1_Mus1 SINE Alu 1 148 0 7 932 573 15 0 0 chr11 45490607 45490673 -76353183 + (GAGAA)n Simple_repeat Simple_repeat 4 69 0 7 932 1454 235 35 9 chr11 45490858 45491197 -76352659 - MTD LTR MaLR -2 417 70 7 932 520 246 50 65 chr11 45491278 45491478 -76352378 + B3A SINE B2 2 198 0 7 932 306 0 0 0 chr11 45491506 45491540 -76352316 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 932 192 111 0 0 chr11 45492076 45492112 -76351744 + (A)n Simple_repeat Simple_repeat 1 36 0 7 932 571 234 128 27 chr11 45493376 45493598 -76350258 + B4A SINE B4 1 292 0 7 932 191 358 0 59 chr11 45494013 45494114 -76349742 + MIR SINE MIR 159 253 -9 7 932 251 361 47 29 chr11 45494523 45494694 -76349162 + MIRc SINE MIR 34 207 -61 7 932 299 301 0 0 chr11 45494724 45494797 -76349059 + ID4_ SINE ID 2 74 -9 7 932 184 257 93 76 chr11 45494827 45494945 -76348911 - MIRb SINE MIR -23 245 126 7 932 244 336 98 0 chr11 45495319 45495441 -76348415 + MLT1K LTR MaLR 5 138 -457 7 932 613 191 0 62 chr11 45495613 45495758 -76348098 - RLTR21 LTR ERVK 0 1572 1437 7 932 321 68 0 0 chr11 45495820 45495864 -76347992 + (CATA)n Simple_repeat Simple_repeat 1 44 0 7 932 402 251 95 91 chr11 45495884 45496116 -76347740 - RMER2 LTR ERV1 -27 540 308 7 932 7079 112 34 15 chr11 45496359 45496370 -76347486 - RLTR21 LTR ERVK -347 1225 1217 7 932 3384 36 8 0 chr11 45496370 45496763 -76347093 + MTA_Mm LTR MaLR 1 396 0 7 932 7079 112 34 15 chr11 45496763 45496859 -76346997 - RLTR21 LTR ERVK -356 1216 1094 7 932 429 54 0 0 chr11 45496859 45496915 -76346941 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 932 285 75 0 0 chr11 45496915 45496954 -76346902 + (CATA)n Simple_repeat Simple_repeat 3 42 0 7 932 7079 112 34 15 chr11 45496954 45498016 -76345840 - RLTR21 LTR ERVK -479 1093 33 7 932 854 256 106 20 chr11 45498041 45498399 -76345457 - MTD LTR MaLR -14 405 17 7 932 329 331 147 12 chr11 45499148 45499399 -76344457 + MER102a DNA MER1_type 38 322 -8 7 932 180 0 0 0 chr11 45499955 45499975 -76343881 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 932 1022 171 116 0 chr11 45501089 45501288 -76342568 - URR1A DNA MER1_type 0 226 5 1 932 198 0 0 0 chr11 45501830 45501852 -76342004 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2 932 225 263 39 26 chr11 45502344 45502422 -76341434 + Tigger13a DNA MER2_type 308 386 -385 3 932 1938 270 121 22 chr11 45502457 45503244 -76340612 + Lx8 LINE L1 6609 7473 0 4 932 278 262 62 0 chr11 45503813 45503893 -76339963 - MER53 DNA hAT 0 193 109 5 932 368 263 105 0 chr11 45503927 45504041 -76339815 + B1F1 SINE Alu 24 149 0 6 932 707 158 88 12 chr11 45504084 45504244 -76339612 + B3 SINE B2 45 216 0 7 932 8156 50 8 0 chr11 45504409 45505430 -76338426 - L1Md_F2 LINE L1 -1 6581 5553 8 932 6161 59 0 0 chr11 45505430 45506190 -76337666 + L1Md_F2 LINE L1 4680 5439 -444 8 932 1005 72 72 0 chr11 45506227 45506365 -76337491 + B1_Mus1 SINE Alu 1 148 0 9 932 306 73 0 0 chr11 45506365 45506406 -76337450 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 1 932 469 227 149 0 chr11 45506493 45506634 -76337222 + RSINE1 SINE B4 2 163 -2 1 932 855 251 12 0 chr11 45507182 45507353 -76336503 + B3 SINE B2 34 206 -10 1 932 450 315 42 15 chr11 45507383 45507621 -76336235 - B4A SINE B4 0 292 2 1 932 2145 180 19 0 chr11 45507825 45508191 -76335665 + ORR1D1 LTR MaLR 1 373 -1 1 932 511 279 59 50 chr11 45508293 45508495 -76335361 + B3A SINE B2 6 215 -1 1 932 397 282 34 34 chr11 45508734 45508881 -76334975 + B1_Mm SINE Alu 1 147 0 1 932 735 276 89 16 chr11 45509712 45509970 -76333886 + B4A SINE B4 16 292 0 1 932 701 164 86 0 chr11 45510039 45510167 -76333689 - B1_Mus1 SINE Alu 0 148 10 1 932 2851 179 9 20 chr11 45510194 45510742 -76333114 + Lx4B LINE L1 6517 7058 0 1 932 1253 62 0 0 chr11 45510782 45510944 -76332912 - L1_Mus2 LINE L1 -1 6565 6404 2 932 866 244 32 41 chr11 45511881 45512099 -76331757 - B4 SINE B4 -20 272 57 2 932 1286 200 91 47 chr11 45512936 45513298 -76330558 - MTE2b LTR MaLR 0 379 2 2 932 190 321 155 35 chr11 45513480 45513596 -76330260 - L2b LINE L2 -2 3373 3244 2 932 429 231 0 62 chr11 45514191 45514288 -76329568 + B4A SINE B4 3 93 -199 2 932 483 117 0 0 chr11 45514294 45514388 -76329468 + (GA)n Simple_repeat Simple_repeat 2 95 0 2 932 1350 147 9 5 chr11 45514445 45514664 -76329192 - URR1B DNA MER1_type -5 220 1 2 932 21 0 0 0 chr11 45514857 45514878 -76328978 + AT_rich Low_complexity Low_complexity 1 21 0 2 932 1246 34 0 0 chr11 45514891 45515038 -76328818 + B1_Mm SINE Alu 1 147 0 2 932 298 287 64 30 chr11 45516189 45516335 -76327521 - MIRb SINE MIR -74 188 46 2 932 441 0 0 0 chr11 45516777 45516826 -76327030 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 932 403 230 35 18 chr11 45518030 45518156 -76325700 - B3A SINE B2 0 216 88 3 932 250 136 0 22 chr11 45518275 45518320 -76325536 - B2_Mm2 SINE B2 -105 90 47 3 932 1247 91 11 28 chr11 45518366 45518547 -76325309 - B2_Mm1t SINE B2 -14 179 2 3 932 271 243 100 0 chr11 45518643 45518713 -76325143 - B3A SINE B2 -121 77 1 3 932 279 0 0 0 chr11 45518738 45518769 -76325087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 932 180 0 0 0 chr11 45518872 45518892 -76324964 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 932 189 132 0 0 chr11 45518909 45518947 -76324909 + (T)n Simple_repeat Simple_repeat 1 38 0 3 932 270 318 86 25 chr11 45519037 45519234 -76324622 - MIRc SINE MIR -58 210 2 3 932 628 202 163 5 chr11 45519957 45520141 -76323715 + Lx7 LINE L1 7468 7680 -16 3 932 252 59 0 0 chr11 45520148 45520182 -76323674 - tRNA-Gln-CAA tRNA tRNA -37 38 5 3 932 426 39 0 0 chr11 45520187 45520239 -76323617 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 932 273 57 0 0 chr11 45521194 45521229 -76322627 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 4 932 416 252 122 0 chr11 45521686 45521801 -76322055 + RSINE1 SINE B4 3 131 -34 4 932 324 0 0 0 chr11 45521805 45521841 -76322015 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 932 283 335 89 22 chr11 45522232 45522546 -76321310 + L1M2 LINE L1 2899 3233 -2910 4 932 687 254 115 0 chr11 45523045 45523289 -76320567 - B4A SINE B4 -18 274 3 4 932 337 293 51 8 chr11 45523335 45523452 -76320404 - PB1 SINE Alu -4 123 2 4 932 201 132 0 0 chr11 45523466 45523504 -76320352 + (CAT)n Simple_repeat Simple_repeat 2 39 0 4 932 805 280 161 9 chr11 45523514 45523856 -76320000 - Lx8 LINE L1 -1 7472 7079 4 932 773 307 72 19 chr11 45523980 45524412 -76319444 + L1M2 LINE L1 3238 3692 -2451 4 932 247 274 41 0 chr11 45524415 45524488 -76319368 + GA-rich Low_complexity Low_complexity 1 76 0 4 932 481 276 19 105 chr11 45524488 45524578 -76319278 + L1M2 LINE L1 3681 3764 -2379 4 932 284 305 8 78 chr11 45524578 45524706 -76319150 + PB1D7 SINE Alu 2 120 0 5 932 481 276 19 105 chr11 45524706 45524939 -76318917 + L1M2 LINE L1 3765 3976 -2167 4 932 846 243 146 45 chr11 45524976 45525312 -76318544 - MTD LTR MaLR -49 370 1 5 932 843 278 24 0 chr11 45526538 45526747 -76317109 + MER44D DNA MER2_type 21 234 -471 5 932 306 295 76 99 chr11 45526751 45527014 -76316842 + MER44D DNA MER2_type 447 702 -3 5 932 366 238 113 84 chr11 45527320 45527462 -76316394 - RSINE1 SINE B4 -17 148 3 5 932 662 174 0 96 chr11 45528409 45528555 -76315301 + B1_Mur1 SINE Alu 18 149 0 5 932 296 314 39 0 chr11 45528658 45528760 -76315096 - B1F1 SINE Alu -10 139 34 5 932 619 142 17 0 chr11 45528849 45528969 -76314887 + GA-rich Low_complexity Low_complexity 2 123 0 5 932 896 272 71 8 chr11 45528979 45529246 -76314610 + B4A SINE B4 9 292 0 5 932 596 219 0 23 chr11 45529246 45529507 -76314349 + (CA)n Simple_repeat Simple_repeat 1 254 0 5 932 221 319 69 26 chr11 45530442 45530558 -76313298 + MIRb SINE MIR 31 151 -117 5 932 195 42 0 0 chr11 45530773 45530797 -76313059 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 932 728 225 14 7 chr11 45530887 45531030 -76312826 + B1_Mur1 SINE Alu 5 148 -1 6 932 576 0 0 0 chr11 45531045 45531109 -76312747 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 6 932 555 326 6 6 chr11 45531118 45531291 -76312565 + B4A SINE B4 1 173 -119 6 932 225 210 0 0 chr11 45531410 45531472 -76312384 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 932 3622 88 73 52 chr11 45532647 45533237 -76310619 + Lx LINE L1 6052 6653 -1 6 932 2180 84 3 0 chr11 45533545 45533856 -76310000 + ORR1A2 LTR MaLR 16 327 0 6 932 698 168 7 0 chr11 45535180 45535317 -76308539 + URR1A DNA MER1_type 78 215 -11 6 932 777 322 104 5 chr11 45535554 45535997 -76307859 + L1M2 LINE L1 4794 5280 -863 6 932 556 280 106 57 chr11 45536001 45536266 -76307590 + B4 SINE B4 14 291 -1 6 932 752 140 22 7 chr11 45537655 45537792 -76306064 + B1_Mus1 SINE Alu 6 144 -4 7 932 2902 45 8 0 chr11 45537939 45538319 -76305537 + L1Md_T LINE L1 76 458 -6064 7 932 36075 36 1 0 chr11 45538294 45544784 -76299072 + L1Md_T LINE L1 1 5589 -297 7 932 9171 5 0 0 chr11 45544784 45545779 -76298077 + L1Md_T LINE L1 5590 6584 -1 7 932 222 194 0 0 chr11 45545782 45545844 -76298012 + A-rich Low_complexity Low_complexity 1 62 0 7 932 420 261 35 18 chr11 45546240 45546353 -76297503 - PB1D10 SINE Alu 0 117 3 7 932 324 0 0 0 chr11 45546387 45546423 -76297433 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 932 587 177 88 8 chr11 45546595 45546720 -76297136 + B1_Mus2 SINE Alu 5 139 -8 7 932 660 205 0 16 chr11 45546781 45546910 -76296946 - B1_Mus1 SINE Alu -20 128 2 7 932 357 262 36 36 chr11 45546999 45547110 -76296746 - PB1D10 SINE Alu -1 116 6 7 932 378 330 60 28 chr11 45547259 45547474 -76296382 - MER58A DNA MER1_type 0 224 3 7 932 230 372 8 23 chr11 45547728 45547860 -76295996 + MLT1J1 LTR MaLR 187 316 -128 7 932 303 214 0 0 chr11 45548924 45548994 -76294862 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 932 315 288 68 106 chr11 45549291 45549423 -76294433 - B1F SINE Alu 0 127 1 8 932 873 214 75 15 chr11 45551189 45551388 -76292468 + B3 SINE B2 1 211 -5 8 932 342 0 0 0 chr11 45551915 45551953 -76291903 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 932 4176 58 50 9 chr11 45552152 45552690 -76291166 + LTRIS2 LTR ERV1 5 564 0 8 932 520 121 0 81 chr11 45552690 45552778 -76291078 - B1_Mus2 SINE Alu -8 139 57 8 932 261 0 0 0 chr11 45552831 45552860 -76290996 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 932 189 0 0 0 chr11 45553228 45553249 -76290607 + (A)n Simple_repeat Simple_repeat 1 21 0 8 932 450 252 19 0 chr11 45554324 45554427 -76289429 + MER5A1 DNA MER1_type 1 105 -61 8 932 6281 65 5 8 chr11 45554760 45555562 -76288294 + L1_Mus1 LINE L1 5768 6567 0 8 932 245 292 14 0 chr11 45555953 45556025 -76287831 + PB1D10 SINE Alu 42 114 -3 9 932 846 304 15 26 chr11 45556108 45556375 -76287481 - B4A SINE B4 -20 272 9 9 932 355 260 32 32 chr11 45556571 45556726 -76287130 - L1ME1 LINE L1 -1 6178 6024 9 932 265 231 38 8 chr11 45557102 45557233 -76286623 + GA-rich Low_complexity Low_complexity 1 135 0 9 932 913 122 178 6 chr11 45557287 45557444 -76286412 + B2_Mm2 SINE B2 1 184 -11 9 932 774 35 70 0 chr11 45557514 45557629 -76286227 + L1_Mus3 LINE L1 6514 6636 -2 9 932 192 288 0 0 chr11 45557658 45557731 -76286125 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 932 258 264 182 69 chr11 45557757 45557834 -76286022 + L1MA9 LINE L1 5883 5964 -348 9 932 213 39 0 0 chr11 45557834 45557860 -76285996 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 932 258 264 182 69 chr11 45557860 45557941 -76285915 + L1MA9 LINE L1 5965 6059 -253 9 932 3135 128 93 94 chr11 45558039 45558730 -76285126 - RMER6C LTR ERVK 0 690 1 9 932 767 292 27 37 chr11 45558750 45559045 -76284811 + B4A SINE B4 1 292 0 1 932 21 57 0 0 chr11 45559076 45559111 -76284745 + AT_rich Low_complexity Low_complexity 1 35 0 1 932 259 266 47 24 chr11 45560108 45560203 -76283653 + MIRc SINE MIR 66 161 -101 1 932 1011 211 19 0 chr11 45560257 45560466 -76283390 + ID_B1 SINE B4 6 218 -6 1 932 259 183 30 0 chr11 45560480 45560550 -76283306 + PB1D10 SINE Alu 15 87 -63 1 932 279 0 0 0 chr11 45560551 45560582 -76283274 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 932 810 289 65 11 chr11 45560585 45560899 -76282957 + L1MB5 LINE L1 5665 5999 -1996 1 932 600 275 111 0 chr11 45561193 45561400 -76282456 + Lx8 LINE L1 6969 7198 -275 1 932 509 184 0 0 chr11 45561433 45561520 -76282336 + B1F2 SINE Alu 50 136 -13 1 932 654 97 0 0 chr11 45561529 45561642 -76282214 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 1 932 903 67 0 0 chr11 45562149 45562268 -76281588 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 1 932 327 277 0 29 chr11 45562532 45562636 -76281220 - MLT1B LTR MaLR -18 372 272 1 932 531 271 101 97 chr11 45562865 45563143 -76280713 - B4 SINE B4 -13 279 1 1 932 431 196 97 10 chr11 45563148 45563251 -76280605 - B3A SINE B2 -85 113 2 1 932 744 194 14 7 chr11 45563289 45563434 -76280422 - B1_Mur2 SINE Alu -2 147 2 1 932 231 240 123 0 chr11 45563434 45563487 -76280369 - B1_Mus1 SINE Alu -86 62 2 1 932 414 220 0 0 chr11 45563564 45563664 -76280192 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 932 212 273 0 38 chr11 45563730 45563810 -76280046 - ID4 SINE ID -3 80 4 1 932 1057 189 5 15 chr11 45564312 45564516 -76279340 - B3 SINE B2 -5 211 10 1 932 271 309 0 12 chr11 45564444 45564526 -76279330 - RSINE1 SINE B4 -83 82 2 1 932 328 330 10 0 chr11 45564569 45564669 -76279187 - PB1 SINE Alu -3 124 24 1 932 779 124 22 0 chr11 45566103 45566240 -76277616 + URR1A DNA MER1_type 51 190 -36 1 932 237 83 0 0 chr11 45566276 45566312 -76277544 + URR1A DNA MER1_type 190 225 -1 1 932 1002 108 132 6 chr11 45566643 45566810 -76277046 + B2_Mm2 SINE B2 1 188 -7 1 932 822 246 62 101 chr11 45566997 45567382 -76276474 - RMER2 LTR ERV1 -27 540 171 1 932 276 104 62 0 chr11 45567382 45567430 -76276426 - RMER2 LTR ERV1 -516 51 1 1 932 922 274 36 71 chr11 45567777 45568207 -76275649 + MER31A LTR ERV1 2 422 -44 1 932 693 56 0 0 chr11 45568247 45568337 -76275519 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 1 932 291 296 0 0 chr11 45568406 45568477 -76275379 + ID4 SINE ID 5 75 -8 1 932 666 172 483 91 chr11 45568762 45568992 -76274864 + ORR1B2 LTR MaLR 52 384 0 1 932 566 242 0 16 chr11 45569663 45569785 -76274071 + B3A SINE B2 2 121 -77 1 932 349 184 0 26 chr11 45569785 45569863 -76273993 - RLTR1 LTR ERV1 0 624 549 1 932 277 315 0 42 chr11 45569880 45569976 -76273880 - B2_Mm2 SINE B2 -103 92 1 1 932 7928 28 0 22 chr11 45570003 45570947 -76272909 - L1Md_A LINE L1 0 6582 5660 1 932 39757 40 1 17 chr11 45570933 45576581 -76267275 - L1Md_A LINE L1 -488 6094 542 1 932 1062 157 24 10 chr11 45576581 45576787 -76267069 - RLTR1 LTR ERV1 -45 579 371 1 932 379 354 41 7 chr11 45577016 45577161 -76266695 + B3A SINE B2 27 176 -22 1 932 27 73 0 0 chr11 45577163 45577218 -76266638 + AT_rich Low_complexity Low_complexity 1 55 0 1 932 1017 229 0 0 chr11 45577354 45577555 -76266301 + B3 SINE B2 16 216 0 1 932 445 292 73 32 chr11 45577592 45577907 -76265949 + L1M5 LINE L1 4929 5256 -890 1 932 361 214 9 117 chr11 45578025 45578136 -76265720 - RSINE1 SINE B4 0 165 67 1 932 1953 211 43 32 chr11 45578170 45578639 -76265217 + RMER19C LTR ERVK 138 611 0 1 932 212 258 32 0 chr11 45578639 45578699 -76265157 - B4 SINE B4 -213 79 18 1 932 889 94 22 0 chr11 45579111 45579249 -76264607 + URR1A DNA MER1_type 85 225 -1 1 932 359 287 165 0 chr11 45579493 45579608 -76264248 - ID_B1 SINE B4 -9 215 82 1 932 567 311 11 32 chr11 45579675 45579861 -76263995 - B3A SINE B2 -16 182 1 1 932 331 258 69 77 chr11 45580412 45580542 -76263314 + ID_B1 SINE B4 88 216 -8 1 932 672 260 103 10 chr11 45581145 45581339 -76262517 + ID_B1 SINE B4 3 214 -10 1 932 354 107 0 0 chr11 45581354 45581410 -76262446 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 1 932 351 0 0 0 chr11 45581525 45581564 -76262292 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 932 2694 200 168 9 chr11 45581686 45582322 -76261534 - RMER19A LTR ERVK 0 737 1 1 932 652 216 34 0 chr11 45582407 45582555 -76261301 - RMER19A LTR ERVK -116 621 469 1 932 36142 36 1 1 chr11 45583049 45589536 -76254320 + L1Md_T LINE L1 1 5589 -297 1 932 9181 5 0 0 chr11 45589536 45590532 -76253324 + L1Md_T LINE L1 5590 6585 0 1 932 414 294 7 47 chr11 45590532 45590548 -76253308 + ID_B1 SINE B4 80 154 -70 1 932 618 221 16 0 chr11 45590548 45590670 -76253186 + B1F SINE Alu 13 136 -13 1 932 414 294 7 47 chr11 45590670 45590682 -76253174 + ID_B1 SINE B4 155 223 -1 1 932 413 240 120 30 chr11 45591088 45591221 -76252635 + RSINE1 SINE B4 4 148 -17 1 932 398 280 48 96 chr11 45591717 45591883 -76251973 + RSINE1 SINE B4 2 159 -6 1 932 414 0 0 0 chr11 45591954 45592000 -76251856 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 932 231 61 0 0 chr11 45592196 45592229 -76251627 + (T)n Simple_repeat Simple_repeat 1 33 0 1 932 609 259 107 68 chr11 45593897 45594178 -76249678 - B4A SINE B4 0 292 1 1 932 220 27 26 26 chr11 45594415 45594453 -76249403 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 932 231 307 49 106 chr11 45595452 45595678 -76248178 - LTR48 LTR ERV1 -10 777 565 1 932 314 68 26 52 chr11 45595793 45595870 -76247986 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 1 932 695 157 0 11 chr11 45595878 45596058 -76247798 + CT-rich Low_complexity Low_complexity 2 179 0 1 932 314 250 45 63 chr11 45596722 45596833 -76247023 + MER58A DNA MER1_type 6 114 -110 1 932 664 261 6 36 chr11 45596874 45597041 -76246815 - RSINE1 SINE B4 -2 163 2 1 932 230 246 31 62 chr11 45598089 45598154 -76245702 + MLT1G LTR MaLR 205 267 -324 1 932 838 220 0 35 chr11 45598309 45598479 -76245377 + RSINE1 SINE B4 2 165 0 1 932 369 0 0 0 chr11 45598479 45598520 -76245336 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 932 180 111 0 0 chr11 45599651 45599678 -76244178 + (CCA)n Simple_repeat Simple_repeat 1 27 0 1 932 293 298 47 23 chr11 45600166 45600252 -76243604 + B1F SINE Alu 7 94 -55 1 932 280 272 25 0 chr11 45600182 45600263 -76243593 + ID_B1 SINE B4 102 184 -40 1 932 493 275 196 6 chr11 45600264 45600443 -76243413 + B3 SINE B2 1 213 -3 1 932 1148 75 0 14 chr11 45600469 45600617 -76243239 + B1_Mus1 SINE Alu 3 148 0 1 932 421 68 27 0 chr11 45600621 45600695 -76243161 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 932 367 290 102 24 chr11 45600760 45600887 -76242969 - ID_B1 SINE B4 -7 217 81 1 932 270 0 0 0 chr11 45601248 45601278 -76242578 + (A)n Simple_repeat Simple_repeat 1 30 0 1 932 526 230 35 11 chr11 45601278 45601408 -76242448 + RLTR16 LTR ERVK 33 220 -340 1 932 403 221 39 57 chr11 45601485 45601634 -76242222 + RLTR16 LTR ERVK 344 482 -23 1 932 561 216 6 103 chr11 45602254 45602405 -76241451 + B1_Mur2 SINE Alu 1 138 -11 1 932 750 78 0 0 chr11 45602405 45602507 -76241349 + (GGGAA)n Simple_repeat Simple_repeat 4 105 0 1 932 561 216 6 103 chr11 45602507 45602520 -76241336 + B1_Mur2 SINE Alu 139 149 0 1 932 348 161 0 0 chr11 45602527 45602589 -76241267 + GA-rich Low_complexity Low_complexity 1 62 0 1 932 567 253 20 20 chr11 45603608 45603757 -76240099 + B1F SINE Alu 1 149 0 1 932 681 271 4 113 chr11 45604131 45604360 -76239496 + B4A SINE B4 14 217 -75 1 932 186 171 0 0 chr11 45604360 45604401 -76239455 + (TAG)n Simple_repeat Simple_repeat 1 41 0 1 932 295 241 0 17 chr11 45604423 45604482 -76239374 + B4A SINE B4 227 284 -8 1 932 879 229 39 14 chr11 45604692 45604900 -76238956 - B3 SINE B2 -1 215 3 1 932 1418 65 11 0 chr11 45604953 45605137 -76238719 + B2_Mm1t SINE B2 2 187 -6 1 932 745 263 62 0 chr11 45606218 45606412 -76237444 - B3 SINE B2 -10 206 1 1 932 333 0 0 0 chr11 45607586 45607623 -76236233 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 932 487 298 130 49 chr11 45607691 45607938 -76235918 - B4 SINE B4 -18 274 8 1 932 490 252 172 0 chr11 45607948 45608099 -76235757 + B3A SINE B2 9 185 -13 1 932 630 307 42 45 chr11 45608560 45608770 -76235086 + ID_B1 SINE B4 10 219 -5 1 932 263 253 52 26 chr11 45609079 45609156 -76234700 - MIRc SINE MIR -99 169 91 1 932 201 222 0 0 chr11 45609675 45609738 -76234118 + T-rich Low_complexity Low_complexity 1 63 0 1 932 431 210 0 57 chr11 45609738 45609844 -76234012 - ID_B1 SINE B4 0 224 125 1 932 5866 32 1 0 chr11 45609875 45610554 -76233302 - L1Md_T LINE L1 0 6582 5903 1 932 213 159 0 0 chr11 45610560 45610604 -76233252 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 932 482 292 48 48 chr11 45610659 45610846 -76233010 + B3A SINE B2 5 191 -7 1 932 409 254 98 45 chr11 45610909 45611041 -76232815 + B1_Mur1 SINE Alu 2 140 -9 1 932 186 43 0 0 chr11 45611056 45611079 -76232777 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1 932 366 23 0 0 chr11 45611283 45611326 -76232530 + (TGG)n Simple_repeat Simple_repeat 1 43 0 1 932 341 298 132 43 chr11 45611483 45611765 -76232091 - MER33 DNA MER1_type -14 310 5 1 932 492 269 0 28 chr11 45612027 45612134 -76231722 + RSINE1 SINE B4 11 114 -51 1 932 300 27 0 0 chr11 45612134 45612171 -76231685 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 932 282 354 78 18 chr11 45612337 45612504 -76231352 - MIRc SINE MIR -18 250 74 1 116 503 265 6 41 chr11 45612942 45613111 -76230745 + RSINE1 SINE B4 3 165 0 2 933 203 306 122 0 chr11 45613264 45613362 -76230494 + L2b LINE L2 3206 3315 -60 2 933 837 241 50 97 chr11 45613603 45613992 -76229864 + RMER10A LTR ERVL 21 417 -25 2 933 1091 286 22 61 chr11 45614156 45614567 -76229289 - MTE2b LTR MaLR -19 400 1 2 933 229 217 22 0 chr11 45614575 45614621 -76229235 - L2c LINE L2 -1 3386 3340 2 933 433 319 41 73 chr11 45615049 45615269 -76228587 + B4 SINE B4 1 213 -79 2 933 420 111 0 0 chr11 45615399 45615471 -76228385 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 933 316 353 56 124 chr11 45615698 45615715 -76228141 + L1ME1 LINE L1 4548 4559 -1587 2 933 500 223 26 35 chr11 45615715 45615831 -76228025 + PB1D10 SINE Alu 3 117 0 2 933 316 353 56 124 chr11 45615831 45615957 -76227899 + L1ME1 LINE L1 4560 4674 -1472 2 933 258 32 0 0 chr11 45615957 45615988 -76227868 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 933 389 238 12 0 chr11 45615998 45616078 -76227778 + ID4 SINE ID 3 83 0 2 933 316 353 56 124 chr11 45616078 45616317 -76227539 + L1ME1 LINE L1 4683 4915 -1231 2 933 1106 90 7 0 chr11 45616380 45616525 -76227331 + B1_Mm SINE Alu 2 147 0 2 933 276 30 0 0 chr11 45616617 45616650 -76227206 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 933 921 153 0 7 chr11 45616684 45616835 -76227021 + B1_Mur4 SINE Alu 1 150 0 2 933 299 330 68 25 chr11 45616900 45617018 -76226838 + B4A SINE B4 53 175 -117 2 933 246 105 0 0 chr11 45617037 45617075 -76226781 + (TAGG)n Simple_repeat Simple_repeat 2 39 0 2 933 312 281 79 30 chr11 45617075 45617240 -76226616 - RMER12 LTR ERVK -474 848 749 2 933 572 291 186 22 chr11 45617254 45617753 -76226103 + L1ME1 LINE L1 5355 5935 -244 2 933 398 217 13 189 chr11 45617979 45618020 -76225836 + B1F SINE Alu 12 46 -103 2 933 690 75 0 0 chr11 45618020 45618113 -76225743 + (GGAAA)n Simple_repeat Simple_repeat 4 96 0 2 933 398 217 13 189 chr11 45618113 45618230 -76225626 + B1F SINE Alu 47 142 -7 2 933 435 255 10 20 chr11 45618133 45618233 -76225623 + ID_B1 SINE B4 122 220 -4 2 933 22 0 0 0 chr11 45618358 45618380 -76225476 + AT_rich Low_complexity Low_complexity 1 22 0 2 933 1290 91 11 21 chr11 45618473 45618663 -76225193 + B2_Mm2 SINE B2 1 188 -7 2 933 33 25 0 0 chr11 45618668 45618708 -76225148 + AT_rich Low_complexity Low_complexity 1 40 0 2 933 348 311 0 0 chr11 45618708 45618814 -76225042 - PB1D10 SINE Alu -10 107 2 2 933 831 164 0 7 chr11 45619737 45619872 -76223984 - B1_Mus1 SINE Alu -14 134 1 2 933 324 209 56 34 chr11 45620756 45620845 -76223011 - MER53 DNA hAT -102 91 1 2 933 403 258 253 19 chr11 45620845 45620999 -76222857 + MER20 DNA MER1_type 30 219 0 2 933 311 282 13 0 chr11 45621063 45621141 -76222715 + ID4_ SINE ID 1 79 -4 2 933 246 260 53 40 chr11 45621186 45621262 -76222594 + B1F1 SINE Alu 1 77 -72 2 933 502 223 10 0 chr11 45622019 45622122 -76221734 + ID_B1 SINE B4 121 224 0 2 933 224 220 0 39 chr11 45622194 45622246 -76221610 + PB1D10 SINE Alu 66 115 -2 2 933 393 144 0 0 chr11 45622799 45622889 -76220967 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 933 189 0 0 0 chr11 45623211 45623232 -76220624 + (T)n Simple_repeat Simple_repeat 1 21 0 2 933 747 212 91 20 chr11 45624886 45625083 -76218773 - B3 SINE B2 -4 212 2 2 933 697 296 41 35 chr11 45625252 45625567 -76218289 - Lx8 LINE L1 -188 7285 6969 2 933 207 0 0 0 chr11 45625593 45625616 -76218240 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 933 375 258 11 33 chr11 45625620 45625712 -76218144 - ID_B1 SINE B4 -16 208 119 2 933 1116 69 14 7 chr11 45626113 45626259 -76217597 + B1_Mus1 SINE Alu 2 148 0 2 933 467 261 182 83 chr11 45626314 45626506 -76217350 - ID_B1 SINE B4 -4 220 10 2 933 236 263 50 50 chr11 45626910 45626990 -76216866 - LTR84a LTR ERVL -317 440 361 2 933 282 333 25 112 chr11 45627704 45627900 -76215956 + B4A SINE B4 1 179 -113 2 933 428 283 144 43 chr11 45627948 45628136 -76215720 + B3 SINE B2 1 207 -9 2 933 321 341 35 62 chr11 45628147 45628291 -76215565 - B4 SINE B4 -72 220 81 2 933 3405 15 18 0 chr11 45628374 45628763 -76215093 + MTA_Mm LTR MaLR 1 396 0 2 933 216 214 0 0 chr11 45628846 45628902 -76214954 + GA-rich Low_complexity Low_complexity 1 56 0 2 933 456 339 22 28 chr11 45629423 45629602 -76214254 - MER117 DNA MER1_type -17 180 3 2 933 352 232 71 24 chr11 45629916 45630000 -76213856 + PB1D7 SINE Alu 11 98 -22 2 933 541 220 50 17 chr11 45629925 45630045 -76213811 + ID_B1 SINE B4 101 224 0 2 933 1041 171 59 15 chr11 45630048 45630250 -76213606 + B3 SINE B2 1 211 -5 2 933 222 226 38 0 chr11 45630276 45630329 -76213527 + GA-rich Low_complexity Low_complexity 4 58 0 2 933 612 286 220 23 chr11 45630330 45630687 -76213169 - MER31B LTR ERV1 -39 427 1 2 933 279 290 0 0 chr11 45630863 45630925 -76212931 - MLT1H LTR MaLR 0 549 488 2 933 883 261 74 5 chr11 45630933 45631149 -76212707 + B4A SINE B4 4 234 -58 2 933 438 323 71 0 chr11 45631158 45631285 -76212571 + RSINE1 SINE B4 16 151 -14 2 933 375 23 0 0 chr11 45631291 45631335 -76212521 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 933 272 137 20 0 chr11 45631411 45631462 -76212394 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 2 933 671 381 32 49 chr11 45631521 45631891 -76211965 - MLT1H LTR MaLR -125 424 61 2 933 665 242 20 0 chr11 45632089 45632238 -76211618 + B3A SINE B2 3 154 -44 2 933 360 0 0 0 chr11 45632241 45632281 -76211575 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 933 248 302 16 0 chr11 45633265 45633328 -76210528 - Helitron3Na_Mam RC Helitron -7 479 416 2 933 1979 208 77 5 chr11 45633578 45633969 -76209887 + MTD LTR MaLR 1 419 0 2 933 866 195 7 13 chr11 45633969 45634120 -76209736 - B3A SINE B2 -47 151 2 2 933 249 280 0 0 chr11 45634144 45634194 -76209662 - B3A SINE B2 -148 50 1 2 933 243 0 0 0 chr11 45634222 45634249 -76209607 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 933 608 281 72 57 chr11 45634255 45634519 -76209337 - B4 SINE B4 -12 280 13 2 933 267 214 236 0 chr11 45634530 45634619 -76209237 - Helitron3Na_Mam RC Helitron -162 324 215 2 933 316 277 96 0 chr11 45634859 45634953 -76208903 + PB1D10 SINE Alu 1 103 -14 2 933 385 317 95 34 chr11 45634967 45635114 -76208742 + ID_B1 SINE B4 40 195 -29 2 933 284 312 0 0 chr11 45635268 45635345 -76208511 + MLT1H1 LTR MaLR 51 127 -428 2 933 749 41 10 0 chr11 45635472 45635569 -76208287 + (TC)n Simple_repeat Simple_repeat 2 99 0 2 933 225 0 0 0 chr11 45635569 45635593 -76208263 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 933 1003 313 73 11 chr11 45637081 45637436 -76206420 + MTE2b LTR MaLR 3 379 0 2 933 2112 112 12 21 chr11 45637537 45637864 -76205992 + ORR1A3 LTR MaLR 1 324 -2 2 933 225 65 0 0 chr11 45638498 45638529 -76205327 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2 933 800 258 84 5 chr11 45638531 45638734 -76205122 - ID_B1 SINE B4 -4 220 2 2 933 1410 69 15 41 chr11 45638757 45638954 -76204902 - B2_Mm2 SINE B2 -3 192 1 2 933 3022 182 91 17 chr11 45638956 45639080 -76204776 - RMER1B Other Other -5 1061 920 2 933 465 19 0 0 chr11 45639080 45639134 -76204722 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 933 3022 188 89 17 chr11 45639134 45639746 -76204110 - RMER1B Other Other -147 919 214 2 933 292 296 131 60 chr11 45639905 45640088 -76203768 - MIRb SINE MIR -2 266 71 2 933 211 276 78 13 chr11 45640544 45640621 -76203235 + L2b LINE L2 3293 3374 -1 2 933 644 233 8 8 chr11 45640833 45640967 -76202889 + B1_Mur2 SINE Alu 2 135 -14 2 933 340 244 14 93 chr11 45640995 45641135 -76202721 + L1MA6 LINE L1 6116 6254 -46 2 933 1105 62 7 46 chr11 45641268 45641420 -76202436 + B1_Mus2 SINE Alu 2 147 0 2 933 207 274 0 0 chr11 45641475 45641526 -76202330 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 2 933 2725 77 141 137 chr11 45641628 45642138 -76201718 + RLTR1B LTR ERV1 1 512 0 2 933 540 232 72 7 chr11 45642143 45642282 -76201574 - B1F SINE Alu 0 149 2 2 933 1255 176 18 5 chr11 45642340 45642562 -76201294 - URR1B DNA MER1_type 0 225 1 2 933 24 32 0 0 chr11 45643533 45643564 -76200292 + AT_rich Low_complexity Low_complexity 1 31 0 2 933 475 284 36 29 chr11 45643713 45643851 -76200005 - ID_B1 SINE B4 -2 222 84 2 933 200 408 4 0 chr11 45645149 45645264 -76198592 - MIRb SINE MIR -121 147 22 2 933 307 250 119 0 chr11 45645445 45645529 -76198327 - RSINE1 SINE B4 -58 107 14 2 933 249 263 158 0 chr11 45645871 45645966 -76197890 + L1MD2 LINE L1 57 166 -6381 2 933 323 307 129 0 chr11 45646211 45646312 -76197544 + ID_B1 SINE B4 90 203 -21 2 933 1042 32 0 0 chr11 45646407 45646533 -76197323 + B1_Mus1 SINE Alu 23 148 0 2 933 654 106 7 36 chr11 45646534 45646671 -76197185 + (GAGAA)n Simple_repeat Simple_repeat 3 135 0 2 933 1340 98 5 10 chr11 45646753 45646948 -76196908 - B2_Mm2 SINE B2 -1 194 1 2 933 1470 183 159 3 chr11 45647077 45647416 -76196440 - MTD LTR MaLR -15 404 13 2 933 372 22 0 0 chr11 45647803 45647848 -76196008 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 933 361 182 51 13 chr11 45647850 45647928 -76195928 - PB1D7 SINE Alu -35 85 5 2 933 315 0 0 0 chr11 45647929 45647964 -76195892 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 933 769 139 47 0 chr11 45647970 45648099 -76195757 - B1_Mur4 SINE Alu -14 136 2 2 933 510 280 119 0 chr11 45648337 45648455 -76195401 + RSINE1 SINE B4 2 133 -32 2 933 297 0 0 0 chr11 45648462 45648495 -76195361 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 933 210 37 0 0 chr11 45648535 45648562 -76195294 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 3 933 1640 202 47 56 chr11 45648730 45649176 -76194680 - RMER10A LTR ERVL 0 442 1 3 933 218 333 15 0 chr11 45649428 45649494 -76194362 + ID2 SINE ID 15 81 -2 3 933 362 316 70 0 chr11 45649540 45649654 -76194202 - ID_B1 SINE B4 -11 213 92 3 933 267 246 196 5 chr11 45649813 45649997 -76193859 + RLTR21 LTR ERVK 1089 1307 -265 3 933 268 256 11 34 chr11 45649997 45650086 -76193770 + (TATG)n Simple_repeat Simple_repeat 1 87 0 3 933 543 31 0 0 chr11 45650764 45650829 -76193027 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 3 933 307 227 53 13 chr11 45650843 45650919 -76192937 - MIRb SINE MIR -77 191 113 3 933 301 254 23 130 chr11 45650933 45651064 -76192792 - PB1D10 SINE Alu 0 117 1 3 933 223 321 16 107 chr11 45650962 45651084 -76192772 - ID_B1 SINE B4 -48 176 66 3 933 943 250 14 14 chr11 45651798 45652021 -76191835 - ID_B1 SINE B4 -1 223 1 3 933 305 337 85 35 chr11 45652395 45652595 -76191261 - MIRc SINE MIR -48 220 11 3 933 220 237 34 0 chr11 45652655 45652714 -76191142 - MIR SINE MIR -78 184 124 3 933 442 188 48 57 chr11 45652925 45653049 -76190807 + L1M4 LINE L1 4846 4968 -1178 3 933 413 333 9 0 chr11 45653068 45653176 -76190680 + PB1D10 SINE Alu 9 117 0 3 933 340 246 169 0 chr11 45653201 45653319 -76190537 + L1M4 LINE L1 4981 5118 -1028 3 933 616 254 67 88 chr11 45653323 45653517 -76190339 + ID_B1 SINE B4 7 196 -28 3 933 369 270 39 29 chr11 45653536 45653639 -76190217 - RSINE1 SINE B4 -59 106 3 3 933 571 244 192 25 chr11 45653862 45654216 -76189640 - L1ME2z LINE L1 -424 6020 5608 3 933 878 239 33 5 chr11 45654288 45654498 -76189358 + ID_B1 SINE B4 2 217 -7 3 933 228 135 0 0 chr11 45655051 45655088 -76188768 + (A)n Simple_repeat Simple_repeat 1 37 0 3 933 756 261 13 0 chr11 45655704 45655857 -76187999 + ID_B1 SINE B4 17 171 -53 3 933 382 257 19 19 chr11 45655847 45655950 -76187906 + PB1D10 SINE Alu 13 115 -2 3 933 519 273 24 78 chr11 45655991 45656158 -76187698 + RSINE1 SINE B4 8 165 0 3 933 640 191 154 41 chr11 45656197 45656366 -76187490 + B3 SINE B2 2 189 -27 3 933 1908 130 13 39 chr11 45656484 45656826 -76187030 + ORR1A4 LTR MaLR 1 377 -2 3 933 389 337 102 69 chr11 45657130 45657582 -76186274 + L2c LINE L2 2921 3387 0 3 933 278 240 145 94 chr11 45657685 45657823 -76186033 - B2_Mm2 SINE B2 -6 189 45 3 933 214 299 164 17 chr11 45657846 45658025 -76185831 - MIR SINE MIR -45 223 26 3 933 901 206 118 11 chr11 45658984 45659170 -76184686 + B3 SINE B2 1 206 -10 3 933 1417 79 11 0 chr11 45659204 45659393 -76184463 + B2_Mm1t SINE B2 2 192 -1 3 933 1142 69 0 0 chr11 45660476 45660621 -76183235 - B1_Mus2 SINE Alu 0 147 3 3 933 24 0 0 0 chr11 45660682 45660706 -76183150 + AT_rich Low_complexity Low_complexity 1 24 0 3 933 315 278 155 0 chr11 45660706 45660803 -76183053 - PB1D9 SINE Alu -8 112 1 3 933 269 344 62 6 chr11 45661058 45661219 -76182637 - LTR16B1 LTR ERVL 0 480 311 3 933 2357 152 29 65 chr11 45661365 45661742 -76182114 + RMER4A LTR ERVK 2 363 -103 3 933 528 93 0 0 chr11 45661742 45661817 -76182039 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 933 2357 152 29 65 chr11 45661817 45661919 -76181937 + RMER4A LTR ERVK 364 464 -2 3 933 216 0 0 0 chr11 45661955 45661979 -76181877 + (T)n Simple_repeat Simple_repeat 1 24 0 3 933 238 145 17 52 chr11 45661984 45662042 -76181814 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 3 933 698 229 171 0 chr11 45662067 45662237 -76181619 - B3 SINE B2 0 216 18 3 933 395 254 17 42 chr11 45662249 45662368 -76181488 - PB1D7 SINE Alu 0 120 5 3 933 21 0 0 0 chr11 45664493 45664514 -76179342 + AT_rich Low_complexity Low_complexity 1 21 0 3 933 183 162 0 0 chr11 45664514 45664551 -76179305 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 933 31 92 0 0 chr11 45664553 45664640 -76179216 + AT_rich Low_complexity Low_complexity 1 87 0 3 933 704 219 0 0 chr11 45664640 45664763 -76179093 - B1_Mur1 SINE Alu -17 132 10 3 933 21 36 0 0 chr11 45665403 45665431 -76178425 + GC_rich Low_complexity Low_complexity 1 28 0 3 933 38 0 0 0 chr11 45665615 45665653 -76178203 + GC_rich Low_complexity Low_complexity 1 38 0 3 933 27 0 0 0 chr11 45665714 45665741 -76178115 + GC_rich Low_complexity Low_complexity 1 27 0 3 933 22 80 0 0 chr11 45667433 45667483 -76176373 + AT_rich Low_complexity Low_complexity 1 50 0 3 933 255 322 73 48 chr11 45667678 45667802 -76176054 + MIR3 SINE MIR 51 177 -31 3 933 359 295 98 0 chr11 45667964 45668086 -76175770 + B3 SINE B2 5 138 -78 3 933 228 173 18 71 chr11 45668193 45668249 -76175607 + tRNA-Ala-GCY_ tRNA tRNA 8 60 -15 3 933 316 271 115 0 chr11 45668512 45668634 -76175222 + B1F2 SINE Alu 1 136 -13 3 933 198 0 0 0 chr11 45670306 45670328 -76173528 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 933 797 225 31 31 chr11 45670757 45670950 -76172906 - B3A SINE B2 -4 194 2 3 933 225 266 119 0 chr11 45671067 45671176 -76172680 - L1MC5 LINE L1 -529 7432 7311 3 933 755 262 48 0 chr11 45671747 45671953 -76171903 - B3 SINE B2 0 216 1 3 933 301 269 118 44 chr11 45672017 45672153 -76171703 - ID_B1 SINE B4 -2 222 77 3 933 454 228 185 0 chr11 45672508 45672670 -76171186 - B3A SINE B2 -6 192 1 3 933 243 133 0 0 chr11 45673003 45673048 -76170808 + (T)n Simple_repeat Simple_repeat 1 45 0 3 933 411 226 179 17 chr11 45673058 45673175 -76170681 - B1F2 SINE Alu -13 136 1 3 933 616 258 132 0 chr11 45673178 45673345 -76170511 - ID_B1 SINE B4 -4 220 32 3 933 831 169 35 7 chr11 45673506 45673649 -76170207 - B1_Mur2 SINE Alu -2 147 1 3 933 423 191 79 0 chr11 45673772 45673861 -76169995 - PB1D10 SINE Alu -8 109 14 3 933 264 279 10 97 chr11 45674047 45674114 -76169742 + RSINE1 SINE B4 15 78 -87 3 933 1350 196 262 68 chr11 45674114 45674148 -76169708 - MT2B LTR ERVL 0 601 568 3 933 342 0 0 0 chr11 45674148 45674186 -76169670 + (TATG)n Simple_repeat Simple_repeat 3 40 0 3 933 1350 196 262 68 chr11 45674186 45674654 -76169202 - MT2B LTR ERVL -34 567 2 3 933 264 279 10 97 chr11 45674654 45674689 -76169167 + RSINE1 SINE B4 79 108 -57 3 933 290 283 28 9 chr11 45674854 45674961 -76168895 + PB1D10 SINE Alu 9 117 0 3 933 197 171 0 0 chr11 45674972 45675007 -76168849 + L2 LINE L2 2834 2868 -551 3 933 22 0 0 0 chr11 45675191 45675213 -76168643 + AT_rich Low_complexity Low_complexity 1 22 0 3 933 359 41 20 0 chr11 45675372 45675421 -76168435 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 933 975 172 104 0 chr11 45675445 45675637 -76168219 + B3 SINE B2 2 213 -3 3 933 584 293 31 13 chr11 45675667 45675826 -76168030 + B3A SINE B2 1 162 -36 3 933 488 283 92 0 chr11 45677220 45677340 -76166516 + ID_B1 SINE B4 81 211 -13 3 933 383 297 10 19 chr11 45677978 45678081 -76165775 + RSINE1 SINE B4 28 129 -36 3 933 461 165 243 0 chr11 45678214 45678317 -76165539 + B1_Mur2 SINE Alu 3 130 -19 3 933 552 247 167 0 chr11 45678717 45678891 -76164965 - ID_B1 SINE B4 -21 203 1 3 933 378 0 0 0 chr11 45678940 45678982 -76164874 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 933 633 270 7 0 chr11 45678990 45679138 -76164718 - B3 SINE B2 -67 149 1 3 933 228 229 0 0 chr11 45679263 45679311 -76164545 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 3 933 997 286 30 30 chr11 45679311 45679679 -76164177 - Lx9 LINE L1 -127 7517 7150 3 933 212 231 0 0 chr11 45680464 45680503 -76163353 + PB1D10 SINE Alu 31 69 -48 3 933 248 207 35 0 chr11 45680501 45680559 -76163297 - PB1D10 SINE Alu -21 96 37 3 933 465 307 7 14 chr11 45680604 45680743 -76163113 + RSINE1 SINE B4 3 140 -25 3 933 351 0 0 0 chr11 45681008 45681047 -76162809 + (GGA)n Simple_repeat Simple_repeat 1 39 0 3 933 445 224 102 0 chr11 45681059 45681157 -76162699 - RSINE1 SINE B4 -55 110 3 3 933 584 212 40 26 chr11 45681391 45681593 -76162263 + B3A SINE B2 14 214 -2 3 933 1341 89 21 16 chr11 45681812 45682006 -76161850 + B2_Mm2 SINE B2 1 195 0 3 933 1264 118 27 0 chr11 45682054 45682240 -76161616 + B2_Mm2 SINE B2 5 195 0 3 933 381 287 65 26 chr11 45682334 45682488 -76161368 + MIR SINE MIR 5 164 -98 3 933 434 68 0 0 chr11 45682594 45682653 -76161203 - ORR1C1 LTR MaLR -12 372 314 3 933 689 157 143 0 chr11 45682653 45682800 -76161056 + Lx3C LINE L1 6809 6976 0 3 933 315 0 0 0 chr11 45682821 45682856 -76161000 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 933 1612 166 43 7 chr11 45682859 45683162 -76160694 - ORR1C1 LTR MaLR -64 314 1 3 933 569 230 63 0 chr11 45683167 45683293 -76160563 - B3A SINE B2 -38 160 27 3 933 375 250 75 56 chr11 45683304 45683465 -76160391 - RMER1A Other Other 0 1030 867 3 933 476 322 132 26 chr11 45684153 45684686 -76159170 + MER82 DNA MER2_type 26 647 -6 3 933 852 141 177 11 chr11 45684917 45685103 -76158753 + URR1A DNA MER1_type 8 224 -2 3 933 786 120 17 0 chr11 45687075 45687192 -76156664 + PB1D9 SINE Alu 2 120 0 3 933 538 234 0 18 chr11 45687245 45687358 -76156498 + B3 SINE B2 92 202 -14 3 933 416 247 192 36 chr11 45687403 45687710 -76156146 + L1MA4 LINE L1 5695 6049 -251 3 933 315 212 30 0 chr11 45687737 45687803 -76156053 + B1F SINE Alu 77 144 -5 4 933 334 260 0 14 chr11 45687805 45687879 -76155977 + ID4 SINE ID 1 73 -10 4 933 1161 68 7 0 chr11 45688438 45688585 -76155271 + B1_Mus1 SINE Alu 1 148 0 4 933 217 132 0 0 chr11 45688585 45688623 -76155233 + (A)n Simple_repeat Simple_repeat 1 38 0 4 933 1188 68 0 0 chr11 45689349 45689495 -76154361 - B1_Mm SINE Alu 0 147 2 4 933 189 0 0 0 chr11 45689563 45689584 -76154272 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 933 407 258 114 32 chr11 45690013 45690212 -76153644 - B3A SINE B2 -1 215 7 4 933 1716 26 0 0 chr11 45691398 45691590 -76152266 + B2_Mm1a SINE B2 2 193 0 4 933 675 99 0 0 chr11 45691602 45691703 -76152153 + (TTCC)n Simple_repeat Simple_repeat 2 102 0 4 933 282 260 39 0 chr11 45692145 45692266 -76151590 + B3A SINE B2 1 172 -26 4 933 6123 80 23 4 chr11 45692661 45693480 -76150376 + Lx LINE L1 5820 6654 0 4 933 574 275 76 97 chr11 45693482 45693667 -76150189 - B3A SINE B2 -14 181 1 4 933 278 280 86 0 chr11 45693845 45693938 -76149918 - PB1D10 SINE Alu -11 106 6 4 933 30 27 0 0 chr11 45694838 45694875 -76148981 + AT_rich Low_complexity Low_complexity 1 37 0 4 933 729 225 147 23 chr11 45698578 45698837 -76145019 - B4A SINE B4 0 292 2 4 933 519 268 47 0 chr11 45698874 45699001 -76144855 - B1_Mur1 SINE Alu -15 134 2 4 933 346 286 0 0 chr11 45699151 45699235 -76144621 + PB1D7 SINE Alu 29 112 -8 4 933 393 270 80 0 chr11 45701579 45701679 -76142177 + PB1D7 SINE Alu 1 108 -12 4 933 248 271 139 17 chr11 45704400 45704580 -76139276 - L1MC2 LINE L1 0 6344 6143 4 933 183 42 0 0 chr11 45704799 45704823 -76139033 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 933 375 276 112 0 chr11 45706626 45706742 -76137114 - ID_B1 SINE B4 -1 223 95 4 933 484 301 15 8 chr11 45706831 45706965 -76136891 + ID_B1 SINE B4 86 220 -4 4 933 337 237 44 0 chr11 45708071 45708162 -76135694 + PB1D10 SINE Alu 1 100 -49 4 933 411 269 9 69 chr11 45708200 45708316 -76135540 + B3A SINE B2 74 182 -16 4 933 724 148 0 8 chr11 45708725 45708854 -76135002 + B1_Mur2 SINE Alu 1 128 -21 4 933 252 312 52 0 chr11 45708963 45709040 -76134816 + ID4 SINE ID 1 81 -2 4 933 324 0 0 0 chr11 45711135 45711171 -76132685 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 933 848 71 15 23 chr11 45711630 45711760 -76132096 - B1_Mus2 SINE Alu -11 136 8 4 933 381 147 17 150 chr11 45711654 45711774 -76132082 - MT2B LTR ERVL -337 264 161 4 933 230 293 26 39 chr11 45712042 45712120 -76131736 - PB1D10 SINE Alu -1 116 40 4 933 744 198 83 57 chr11 45714834 45715027 -76128829 + B3A SINE B2 1 198 0 4 933 748 77 248 0 chr11 45715165 45715282 -76128574 + B1_Mm SINE Alu 2 147 0 4 933 225 167 76 0 chr11 45715411 45715477 -76128379 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 933 942 49 0 0 chr11 45717576 45717698 -76126158 + B2_Mm2 SINE B2 2 123 -72 4 933 207 0 0 0 chr11 45717698 45717721 -76126135 + (T)n Simple_repeat Simple_repeat 1 23 0 4 933 8705 29 0 0 chr11 45717740 45718736 -76125120 - L1Md_T LINE L1 0 6582 5587 4 933 24 0 0 0 chr11 45723230 45723254 -76120602 + AT_rich Low_complexity Low_complexity 1 24 0 4 933 32 0 0 0 chr11 45724200 45724232 -76119624 + AT_rich Low_complexity Low_complexity 1 32 0 4 933 221 194 106 61 chr11 45724888 45724910 -76118946 - B4A SINE B4 -133 159 91 4 933 243 182 23 0 chr11 45724910 45724954 -76118902 - B1F1 SINE Alu -99 50 6 4 933 329 243 154 10 chr11 45725139 45725243 -76118613 + RSINE1 SINE B4 16 134 -31 4 933 316 244 136 36 chr11 45725306 45725446 -76118410 + RSINE1 SINE B4 4 157 -8 4 933 566 219 151 12 chr11 45725522 45725688 -76118168 + B3A SINE B2 2 190 -8 4 933 294 29 0 0 chr11 45726159 45726194 -76117662 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 933 180 0 0 0 chr11 45726323 45726343 -76117513 + (CCCA)n Simple_repeat Simple_repeat 4 23 0 4 933 538 196 74 40 chr11 45726694 45726843 -76117013 - ID_B1 SINE B4 -8 216 63 4 933 232 229 53 79 chr11 45727143 45727219 -76116637 - Charlie1b DNA MER1_type -11 512 439 4 933 727 143 331 6 chr11 45727580 45727749 -76116107 - URR1A DNA MER1_type -2 224 1 4 933 262 275 74 12 chr11 45727801 45727882 -76115974 - B1F SINE Alu -48 101 16 4 933 300 257 83 28 chr11 45727882 45727990 -76115866 - PB1D10 SINE Alu -2 115 2 4 933 495 0 0 0 chr11 45728037 45728092 -76115764 + (GTTTG)n Simple_repeat Simple_repeat 4 58 0 4 933 691 126 110 7 chr11 45728300 45728436 -76115420 + B1_Mur4 SINE Alu 1 150 0 4 933 219 103 0 0 chr11 45728471 45728510 -76115346 + (T)n Simple_repeat Simple_repeat 1 39 0 4 933 1201 41 0 13 chr11 45728510 45728659 -76115197 - B1_Mm SINE Alu 0 147 1 4 933 585 255 101 27 chr11 45728692 45728841 -76115015 + RSINE1 SINE B4 6 165 0 4 933 969 17 0 0 chr11 45729440 45729556 -76114300 + B1_Mus1 SINE Alu 33 148 0 4 933 785 272 38 0 chr11 45730064 45730277 -76113579 - ID_B1 SINE B4 0 224 4 4 933 1244 295 62 16 chr11 45730361 45730864 -76112992 - L1MB3 LINE L1 -55 6128 5603 4 933 235 287 60 60 chr11 45730864 45730964 -76112892 - PB1 SINE Alu 0 127 28 4 933 202 29 0 54 chr11 45731418 45731455 -76112401 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 933 386 154 102 119 chr11 45731789 45731907 -76111949 + MT2B LTR ERVL 149 264 -337 4 933 379 302 35 28 chr11 45731796 45731808 -76112048 + ID_B1 SINE B4 80 134 -90 4 933 832 87 9 0 chr11 45731808 45731923 -76111933 + B1_Mur4 SINE Alu 16 131 -19 4 933 379 302 35 28 chr11 45731923 45731939 -76111917 + ID_B1 SINE B4 135 223 -1 4 933 277 210 21 35 chr11 45731977 45732120 -76111736 + CT-rich Low_complexity Low_complexity 3 143 0 4 933 250 235 118 0 chr11 45732124 45732192 -76111664 - ID4 SINE ID -6 77 2 4 933 309 275 0 24 chr11 45732194 45732276 -76111580 - L1MEf LINE L1 -4125 2075 1996 4 933 1253 14 0 0 chr11 45732866 45733005 -76110851 + B1_Mus2 SINE Alu 1 139 -8 4 933 216 0 0 0 chr11 45733005 45733029 -76110827 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 933 504 274 82 6 chr11 45733290 45733448 -76110408 + B3 SINE B2 47 216 0 4 933 1155 56 14 0 chr11 45733532 45733676 -76110180 - B1_Mm SINE Alu 0 147 2 4 933 382 295 15 37 chr11 45733919 45734053 -76109803 + B4A SINE B4 2 132 -160 4 933 477 0 0 0 chr11 45734333 45734386 -76109470 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 933 339 25 0 0 chr11 45736038 45736078 -76107778 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 933 1169 65 0 4 chr11 45736813 45737060 -76106796 + (TTC)n Simple_repeat Simple_repeat 1 246 0 4 933 260 119 29 43 chr11 45737060 45737130 -76106726 + CT-rich Low_complexity Low_complexity 3 71 0 4 933 333 0 0 0 chr11 45737139 45737176 -76106680 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 4 933 1038 83 7 53 chr11 45737176 45737328 -76106528 - B2_Mm2 SINE B2 -38 157 13 4 933 645 196 28 14 chr11 45737797 45737942 -76105914 - B1_Mur1 SINE Alu -1 148 2 4 933 1422 78 10 5 chr11 45738161 45738354 -76105502 + B2_Mm2 SINE B2 2 195 0 4 933 24 0 0 0 chr11 45738589 45738613 -76105243 + AT_rich Low_complexity Low_complexity 1 24 0 4 933 361 219 14 0 chr11 45739117 45739190 -76104666 - MamSINE1 SINE tRNA -205 85 12 4 933 523 225 54 4 chr11 45739557 45739722 -76104134 - B3A SINE B2 -12 183 1 4 933 187 154 0 36 chr11 45739756 45739802 -76104054 - MIRc SINE MIR -120 148 104 4 933 270 242 15 46 chr11 45740836 45740901 -76102955 - ID4_ SINE ID -16 67 5 4 933 318 244 128 0 chr11 45740904 45740990 -76102866 - PB1D10 SINE Alu -8 109 13 4 933 303 256 207 66 chr11 45741452 45741555 -76102301 - B4A SINE B4 -49 243 1 4 933 368 233 64 64 chr11 45741555 45741665 -76102191 - B3A SINE B2 -88 110 1 4 933 588 189 30 10 chr11 45742078 45742208 -76101648 - PB1D7 SINE Alu 0 150 17 4 116 545 226 57 8 chr11 45744026 45744169 -76099687 + B1_Mur1 SINE Alu 1 149 -1 4 934 225 0 0 0 chr11 45745789 45745814 -76098042 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 934 1147 55 7 20 chr11 45745815 45745964 -76097892 - B1_Mus2 SINE Alu 0 147 1 4 934 235 312 27 130 chr11 45748359 45748392 -76095464 - B4A SINE B4 -46 246 149 4 934 690 229 8 0 chr11 45748392 45748523 -76095333 - B1_Mur2 SINE Alu -9 140 9 4 934 235 312 27 130 chr11 45748523 45748543 -76095313 - B4A SINE B4 -46 148 82 4 934 700 183 278 0 chr11 45748647 45748838 -76095018 - RMER21B LTR ERV1 -277 565 322 4 934 464 221 35 9 chr11 45748870 45748984 -76094872 - RMER21B LTR ERV1 -397 445 329 4 934 432 230 116 23 chr11 45749405 45749534 -76094322 + B1F SINE Alu 2 142 -7 4 934 275 215 0 97 chr11 45749695 45749767 -76094089 - B4 SINE B4 -21 271 207 4 934 595 221 63 0 chr11 45749782 45749909 -76093947 + B1_Mur2 SINE Alu 2 136 -13 4 934 334 117 0 32 chr11 45749909 45749971 -76093885 + B1_Mur3 SINE Alu 89 148 -1 4 934 245 333 0 56 chr11 45750035 45750124 -76093732 - MER20 DNA MER1_type -1 218 135 4 934 242 264 41 14 chr11 45750172 45750245 -76093611 + MLT2D LTR ERVL 97 171 -243 5 934 1565 159 216 9 chr11 45750273 45750597 -76093259 + ORR1B1 LTR MaLR 1 391 -3 5 934 25 0 0 0 chr11 45751538 45751563 -76092293 + AT_rich Low_complexity Low_complexity 1 25 0 5 934 916 146 21 0 chr11 45751578 45751722 -76092134 + B1_Mus2 SINE Alu 1 147 0 5 934 315 89 0 22 chr11 45751862 45751908 -76091948 + B1_Mus1 SINE Alu 10 54 -94 5 934 25 31 0 0 chr11 45751996 45752028 -76091828 + AT_rich Low_complexity Low_complexity 1 32 0 5 934 1513 60 16 0 chr11 45752036 45752221 -76091635 + B2_Mm2 SINE B2 1 188 -7 5 934 263 333 75 0 chr11 45753048 45753141 -76090715 + MIR3 SINE MIR 74 173 -35 5 934 1922 239 48 19 chr11 45755042 45755416 -76088440 + Lx5 LINE L1 6621 7011 -39 5 934 2430 83 3 60 chr11 45755416 45755763 -76088093 + ORR1A2 LTR MaLR 1 327 0 5 934 1922 239 48 19 chr11 45755763 45755806 -76088050 + Lx5 LINE L1 7012 7050 0 5 934 196 352 65 11 chr11 45755950 45756042 -76087814 - MIRc SINE MIR -121 147 51 5 934 346 346 80 6 chr11 45756163 45756326 -76087530 - MIR SINE MIR -41 221 47 5 934 511 229 181 19 chr11 45759314 45759474 -76084382 - B3 SINE B2 -8 208 23 5 934 225 0 0 0 chr11 45760893 45760918 -76082938 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 934 225 0 0 0 chr11 45761455 45761480 -76082376 + (A)n Simple_repeat Simple_repeat 1 25 0 5 934 597 223 70 21 chr11 45761991 45762133 -76081723 + B1_Mur1 SINE Alu 1 149 0 5 934 299 289 13 0 chr11 45762151 45762227 -76081629 + ID4_ SINE ID 4 80 -3 5 934 336 204 72 20 chr11 45762278 45762391 -76081465 + MTC LTR MaLR 1 128 -251 5 934 393 303 141 0 chr11 45762402 45762544 -76081312 + MT2A LTR ERVL 252 413 -120 5 934 213 245 0 0 chr11 45762660 45762709 -76081147 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 934 237 200 36 0 chr11 45762711 45762766 -76081090 + MLT2B2 LTR ERVL 506 562 0 5 934 942 209 27 5 chr11 45763242 45763430 -76080426 - B3 SINE B2 -23 193 2 5 934 682 140 80 99 chr11 45764164 45764315 -76079541 - B1_Mus1 SINE Alu 0 148 1 5 934 609 254 159 46 chr11 45765583 45765822 -76078034 + B4A SINE B4 14 279 -13 5 934 203 314 29 0 chr11 45765844 45765914 -76077942 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 934 198 0 0 0 chr11 45766096 45766118 -76077738 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 934 2814 121 2 2 chr11 45766579 45766976 -76076880 - MTC LTR MaLR -24 397 1 5 934 879 234 104 41 chr11 45767808 45768076 -76075780 + B4 SINE B4 2 286 -6 5 934 366 256 64 0 chr11 45769477 45769555 -76074301 + RSINE1 SINE B4 3 85 -80 5 934 914 339 10 21 chr11 45769675 45769964 -76073892 - B4A SINE B4 -1 291 6 5 934 664 276 125 26 chr11 45769989 45770301 -76073555 + L1MC4 LINE L1 6698 7040 -1002 5 934 305 299 117 37 chr11 45770347 45770510 -76073346 + L1MC5 LINE L1 6973 7148 -813 5 934 206 336 148 17 chr11 45770828 45770943 -76072913 + MER5B DNA MER1_type 1 130 -48 5 934 677 249 62 11 chr11 45770954 45771020 -76072836 - B3A SINE B2 -2 196 121 5 934 798 109 0 0 chr11 45771020 45771148 -76072708 + (GA)n Simple_repeat Simple_repeat 1 128 0 5 934 677 249 62 11 chr11 45771148 45771260 -76072596 - B3A SINE B2 -78 120 9 5 934 1963 227 35 10 chr11 45771888 45772369 -76071487 - RLTR16 LTR ERVK -12 493 1 5 934 373 203 0 0 chr11 45772510 45772574 -76071282 + RMER12B LTR ERVK 1341 1404 0 5 934 1076 201 172 89 chr11 45772575 45772744 -76071112 - MTD LTR MaLR -39 380 210 5 934 809 184 0 35 chr11 45772744 45772885 -76070971 - B1_Mur2 SINE Alu -13 136 1 5 934 1076 201 172 89 chr11 45772885 45773064 -76070792 - MTD LTR MaLR -210 209 3 5 934 365 164 310 52 chr11 45773464 45773580 -76070276 - B2_Mm1t SINE B2 0 193 48 5 934 1195 101 12 6 chr11 45773631 45773801 -76070055 - B2_Mm1t SINE B2 -14 179 9 5 934 955 130 7 0 chr11 45773809 45773947 -76069909 + B1_Mus1 SINE Alu 5 143 -5 5 934 271 340 93 87 chr11 45774322 45774483 -76069373 - MLT1J LTR MaLR -194 318 157 5 934 330 321 80 0 chr11 45774890 45775002 -76068854 + RSINE1 SINE B4 4 124 -41 5 934 752 232 104 16 chr11 45775134 45775294 -76068562 + B3 SINE B2 2 167 -49 5 934 534 70 0 0 chr11 45775294 45775365 -76068491 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 934 752 232 104 16 chr11 45775365 45775397 -76068459 + B3 SINE B2 168 210 -6 5 934 441 0 0 0 chr11 45775948 45775997 -76067859 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 934 306 237 114 38 chr11 45777712 45777791 -76066065 - B1F2 SINE Alu -15 134 21 5 934 4446 78 29 21 chr11 45777858 45778525 -76065331 + RLTR13D6 LTR ERVK 118 789 -113 5 934 552 68 0 0 chr11 45778526 45778599 -76065257 + (A)n Simple_repeat Simple_repeat 1 73 0 5 934 231 261 0 30 chr11 45779069 45779136 -76064720 + L1MB2 LINE L1 5603 5667 -516 5 934 225 0 0 0 chr11 45779164 45779189 -76064667 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 5 934 671 182 6 83 chr11 45779191 45779347 -76064509 - B1_Mus1 SINE Alu 0 148 5 5 934 246 263 0 0 chr11 45779348 45779405 -76064451 - L1_Mur3 LINE L1 -1444 4433 4377 5 934 1544 256 7 12 chr11 45779433 45779845 -76064011 - L1_Mur3 LINE L1 -1579 4301 3892 5 934 1376 275 94 9 chr11 45779871 45780330 -76063526 + L1MB2 LINE L1 5674 6171 0 5 934 189 74 0 0 chr11 45780757 45780784 -76063072 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 934 183 320 60 30 chr11 45781024 45781124 -76062732 - L2c LINE L2 -6 3381 3279 5 934 943 202 108 24 chr11 45781449 45781698 -76062158 - MTEb LTR MaLR 0 379 110 5 934 378 0 0 0 chr11 45781746 45781788 -76062068 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 934 1746 171 79 101 chr11 45781789 45782245 -76061611 - RLTR11A LTR ERVK -80 448 3 5 934 452 306 0 9 chr11 45782245 45782354 -76061502 - MTEb LTR MaLR -263 116 9 5 934 223 312 16 114 chr11 45782723 45782846 -76061010 - MER91A DNA Tip100 -31 165 55 5 934 2659 150 17 17 chr11 45783041 45783363 -76060493 - MTC LTR MaLR 0 421 99 5 934 1233 62 0 7 chr11 45783363 45783510 -76060346 - B1_Mus1 SINE Alu -1 147 2 5 934 2659 150 17 17 chr11 45783510 45783608 -76060248 - MTC LTR MaLR -323 98 1 5 934 355 265 48 48 chr11 45783759 45783862 -76059994 - PB1D7 SINE Alu -10 110 8 5 934 199 295 49 0 chr11 45783867 45783928 -76059928 + L2a LINE L2 3333 3396 -30 5 934 244 44 67 0 chr11 45784097 45784142 -76059714 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 934 352 275 25 0 chr11 45784150 45784230 -76059626 + RSINE1 SINE B4 2 83 -82 5 934 586 282 32 0 chr11 45784281 45784437 -76059419 + RMER1A Other Other 84 244 -786 5 934 3420 186 191 37 chr11 45784454 45785215 -76058641 + RMER1A Other Other 14 870 -160 5 934 266 50 25 0 chr11 45785215 45785255 -76058601 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 934 3420 186 191 37 chr11 45785255 45785375 -76058481 + RMER1A Other Other 871 1029 -1 5 934 254 125 21 0 chr11 45785517 45785565 -76058291 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 5 934 517 217 0 130 chr11 45785565 45785703 -76058153 - PB1D9 SINE Alu 0 120 1 5 934 403 240 10 20 chr11 45785903 45786001 -76057855 + MTEa LTR MaLR 8 104 -275 5 934 411 340 79 99 chr11 45786003 45786408 -76057448 + MT2A LTR ERVL 137 533 0 5 934 225 132 0 0 chr11 45787343 45787381 -76056475 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 934 1513 247 56 3 chr11 45787382 45787719 -76056137 + ORR1D2 LTR MaLR 3 357 -13 5 934 252 274 84 14 chr11 45788567 45788663 -76055193 - MIRb SINE MIR -64 144 43 5 934 329 260 13 0 chr11 45788760 45788837 -76055019 - ID_B1 SINE B4 -13 211 134 5 934 617 332 15 15 chr11 45788860 45789056 -76054800 - ID_B1 SINE B4 -1 223 28 5 934 294 179 18 0 chr11 45789181 45789237 -76054619 - B1_Mur1 SINE Alu -7 142 86 5 934 277 239 0 0 chr11 45789320 45789366 -76054490 - B1F1 SINE Alu -102 47 2 5 934 440 287 79 48 chr11 45789741 45789906 -76053950 - L1MA4 LINE L1 -424 5876 5692 5 934 352 301 186 41 chr11 45789919 45790547 -76053309 - L1M4 LINE L1 -2749 3397 2679 5 934 4663 112 72 8 chr11 45790593 45791304 -76052552 - RMER6A LTR ERVK 0 756 1 5 934 383 232 69 20 chr11 45791379 45791480 -76052376 + RSINE1 SINE B4 2 107 -58 5 934 267 31 0 0 chr11 45791484 45791516 -76052340 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 934 327 304 92 31 chr11 45791551 45791812 -76052044 - L1M4 LINE L1 -3579 2567 2291 5 934 26 0 0 0 chr11 45791930 45791956 -76051900 + AT_rich Low_complexity Low_complexity 1 26 0 5 934 491 282 32 8 chr11 45792082 45792207 -76051649 - B1F SINE Alu 0 149 22 5 934 321 333 34 27 chr11 45792579 45792762 -76051094 - L2c LINE L2 0 3387 3180 5 934 24 0 0 0 chr11 45793791 45793815 -76050041 + GC_rich Low_complexity Low_complexity 1 24 0 5 934 220 91 22 22 chr11 45793841 45793886 -76049970 + (CCG)n Simple_repeat Simple_repeat 2 46 0 5 934 258 81 0 0 chr11 45794147 45794184 -76049672 + (CCG)n Simple_repeat Simple_repeat 2 38 0 5 934 22 56 0 0 chr11 45795360 45795396 -76048460 + AT_rich Low_complexity Low_complexity 1 36 0 5 934 25 0 0 0 chr11 45795580 45795605 -76048251 + AT_rich Low_complexity Low_complexity 1 25 0 5 934 1291 41 0 0 chr11 45795647 45795792 -76048064 - B1_Mus2 SINE Alu -2 145 1 5 934 500 275 11 0 chr11 45795886 45795977 -76047879 - ID_B1 SINE B4 -130 94 3 5 934 1298 48 0 0 chr11 45796054 45796200 -76047656 + B1_Mm SINE Alu 2 147 0 5 934 22 0 0 0 chr11 45797091 45797113 -76046743 + AT_rich Low_complexity Low_complexity 1 22 0 5 934 686 257 20 157 chr11 45798675 45798975 -76044881 - MTE2a LTR MaLR -120 259 1 5 934 896 164 64 0 chr11 45799263 45799434 -76044422 + URR1A DNA MER1_type 45 226 0 5 934 2064 204 57 31 chr11 45799629 45800105 -76043751 - RLTR12B LTR ERVK -40 488 1 5 934 363 172 78 0 chr11 45800105 45800169 -76043687 - B3A SINE B2 -127 71 3 6 934 347 43 0 0 chr11 45800217 45800263 -76043593 - L1Md_F2 LINE L1 -534 6048 6003 6 934 189 299 50 116 chr11 45800810 45800931 -76042925 - L2c LINE L2 -16 3371 3259 6 934 1176 100 0 0 chr11 45800932 45801092 -76042764 - B2_Mm2 SINE B2 -33 162 3 6 934 289 329 0 0 chr11 45801868 45801953 -76041903 + Lx8 LINE L1 7243 7327 -146 6 934 1408 93 16 5 chr11 45803280 45803464 -76040392 + B2_Mm2 SINE B2 2 187 -8 6 934 616 265 38 76 chr11 45803610 45803794 -76040062 - B3A SINE B2 -21 177 1 6 934 355 228 52 52 chr11 45803864 45803961 -76039895 + PB1D10 SINE Alu 7 103 -46 6 934 206 326 98 52 chr11 45804785 45804979 -76038877 - L2a LINE L2 0 3426 3224 6 934 411 288 34 67 chr11 45805740 45805889 -76037967 - MER102a DNA MER1_type -26 304 161 6 934 421 300 20 73 chr11 45805953 45806104 -76037752 - MER5A1 DNA MER1_type -23 143 1 6 934 1238 75 0 0 chr11 45806564 45806711 -76037145 - B1_Mm SINE Alu 0 147 1 6 934 243 0 0 0 chr11 45806721 45806748 -76037108 + (T)n Simple_repeat Simple_repeat 1 27 0 6 934 1149 37 74 0 chr11 45806754 45806889 -76036967 - B1_Mus2 SINE Alu -1 146 2 6 934 17991 122 77 72 chr11 45807205 45808210 -76035646 - L1_Mus2 LINE L1 -621 5945 4943 6 934 1702 50 0 0 chr11 45808210 45808409 -76035447 + L1Md_T LINE L1 6382 6580 -2 6 934 17991 149 98 89 chr11 45808409 45812742 -76031114 - L1_Mus2 LINE L1 -944 4942 562 6 934 1132 242 48 143 chr11 45812755 45813314 -76030542 - L1MA4A LINE L1 -377 5926 5421 6 934 310 287 73 31 chr11 45813345 45813573 -76030283 - L1_Mur3 LINE L1 -3560 2287 2062 6 934 1218 154 124 0 chr11 45813778 45813979 -76029877 - URR1A DNA MER1_type 0 226 1 6 934 361 278 87 22 chr11 45813979 45814163 -76029693 + MusHAL1 LINE L1 459 654 -2058 6 934 533 275 164 6 chr11 45814173 45814356 -76029500 + B3 SINE B2 5 216 0 6 934 310 315 42 18 chr11 45814566 45814731 -76029125 + L1MC1 LINE L1 6164 6332 -1 6 934 587 128 0 0 chr11 45814742 45814828 -76029028 + BC1_Mm scRNA scRNA 1 86 -66 6 934 1173 225 90 65 chr11 45814857 45815322 -76028534 + L1M4 LINE L1 4766 5242 -904 6 934 285 267 117 32 chr11 45815377 45815641 -76028215 + L1M4 LINE L1 5320 5608 -586 6 934 595 265 147 34 chr11 45815946 45816184 -76027672 - MLT1C LTR MaLR -3 464 200 6 934 2790 92 43 41 chr11 45816210 45816672 -76027184 - RLTR45 LTR ERVK -19 463 1 6 934 570 15 0 0 chr11 45816672 45816739 -76027117 + (TATTG)n Simple_repeat Simple_repeat 5 71 0 6 934 189 0 0 0 chr11 45816739 45816760 -76027096 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 934 448 246 134 131 chr11 45816760 45817050 -76026806 - B4 SINE B4 0 292 2 6 934 34 24 0 0 chr11 45817059 45817100 -76026756 + AT_rich Low_complexity Low_complexity 1 41 0 6 934 378 270 148 7 chr11 45817127 45817276 -76026580 - MLT1C LTR MaLR -288 179 10 6 934 246 32 0 0 chr11 45817765 45817796 -76026060 + (C)n Simple_repeat Simple_repeat 1 31 0 6 934 729 257 14 0 chr11 45818118 45818262 -76025594 + RSINE1 SINE B4 4 149 -16 6 934 206 224 20 0 chr11 45818692 45818741 -76025115 + CT-rich Low_complexity Low_complexity 2 51 0 6 934 293 242 194 83 chr11 45818901 45818952 -76024904 - CYRA11_Mm Unknown Y-chromosome -223 394 223 6 934 825 93 20 54 chr11 45818952 45819099 -76024757 + URR1A DNA MER1_type 79 220 -6 6 934 293 242 194 83 chr11 45819099 45819117 -76024739 - CYRA11_Mm Unknown Y-chromosome -223 222 155 6 934 829 268 152 33 chr11 45819186 45819276 -76024580 - L1MA4 LINE L1 -1 6296 6193 6 934 1198 52 0 0 chr11 45819276 45819411 -76024445 + B1_Mus2 SINE Alu 1 135 -12 6 934 180 0 0 0 chr11 45819412 45819432 -76024424 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 934 973 262 101 26 chr11 45819432 45819971 -76023885 - L1MA4 LINE L1 -105 6192 5593 6 934 382 276 161 43 chr11 45819968 45820248 -76023608 - L1MA4 LINE L1 -837 5306 4994 6 934 269 239 15 15 chr11 45820504 45820572 -76023284 + B1_Mur4 SINE Alu 65 132 -18 6 934 1447 283 120 15 chr11 45820599 45821281 -76022575 - L1MA4 LINE L1 -1873 4270 3517 6 934 210 292 0 0 chr11 45821344 45821392 -76022464 + polypyrimidine Low_complexity Low_complexity 1 48 0 6 934 274 311 43 43 chr11 45821395 45821536 -76022320 - B1_Mm SINE Alu -1 146 6 6 934 39953 43 8 0 chr11 45821623 45828077 -76015779 - L1Md_T LINE L1 0 6582 144 6 934 246 293 126 26 chr11 45828085 45828632 -76015224 - L1MA4 LINE L1 -2778 3365 2764 6 934 1278 54 0 0 chr11 45828646 45828793 -76015063 + B1_Mus2 SINE Alu 1 147 0 6 934 350 149 178 33 chr11 45828866 45828956 -76014900 - L1MA4 LINE L1 -3416 2727 2625 6 934 269 238 38 0 chr11 45829630 45829710 -76014146 + CT-rich Low_complexity Low_complexity 4 86 0 6 934 1438 244 52 6 chr11 45831630 45831976 -76011880 - MTEa LTR MaLR 0 379 18 6 934 414 100 0 0 chr11 45832774 45832834 -76011022 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 934 590 250 44 20 chr11 45832852 45833043 -76010813 - B4A SINE B4 -96 196 4 6 934 724 253 16 6 chr11 45833446 45833629 -76010227 - B3A SINE B2 -13 185 1 6 934 465 19 0 0 chr11 45834342 45834396 -76009460 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6 934 1331 60 0 6 chr11 45834396 45834556 -76009300 - B2_Mm1t SINE B2 -33 160 1 6 934 351 60 0 0 chr11 45835077 45835127 -76008729 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 934 245 293 12 12 chr11 45835267 45835350 -76008506 + RSINE1 SINE B4 2 84 -81 6 934 560 338 182 12 chr11 45835810 45836217 -76007639 + MLT1J LTR MaLR 37 512 0 6 934 425 263 37 15 chr11 45836891 45837026 -76006830 + B1F SINE Alu 10 147 -2 6 934 603 261 32 6 chr11 45837033 45837191 -76006665 + RSINE1 SINE B4 2 163 -2 6 934 1160 69 14 0 chr11 45837240 45837385 -76006471 + B1_Mus1 SINE Alu 2 148 0 6 934 684 234 29 7 chr11 45837443 45837581 -76006275 + RSINE1 SINE B4 3 143 -22 6 934 234 313 67 84 chr11 45837581 45837593 -76006263 + B2_Mm1t SINE B2 2 147 -46 6 934 258 32 0 0 chr11 45837593 45837624 -76006232 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 934 234 313 67 84 chr11 45837624 45837651 -76006205 + B2_Mm1t SINE B2 148 176 -17 6 934 192 333 39 65 chr11 45837716 45837870 -76005986 + L2a LINE L2 3273 3422 -4 6 934 1166 82 0 0 chr11 45838013 45838160 -76005696 + B1_Mus2 SINE Alu 1 147 0 6 934 229 222 37 0 chr11 45838306 45838360 -76005496 + CT-rich Low_complexity Low_complexity 2 57 0 6 934 252 122 0 0 chr11 45838362 45838403 -76005453 + (TCC)n Simple_repeat Simple_repeat 1 41 0 6 934 469 273 68 128 chr11 45838403 45838424 -76005432 - B4A SINE B4 -46 246 186 6 934 1008 95 15 0 chr11 45838424 45838561 -76005295 - B1_Mus2 SINE Alu -7 140 2 6 934 469 273 68 128 chr11 45838561 45838602 -76005254 - B4A SINE B4 -46 185 56 6 934 234 0 0 0 chr11 45838602 45838628 -76005228 + (TTTAG)n Simple_repeat Simple_repeat 2 27 0 6 934 469 273 68 128 chr11 45838628 45838663 -76005193 - B4A SINE B4 -237 55 26 6 934 1261 48 0 0 chr11 45839080 45839227 -76004629 + B1_Mus2 SINE Alu 1 147 0 6 934 1056 214 15 0 chr11 45840363 45840569 -76003287 - B3 SINE B2 -6 210 2 6 934 1146 75 0 0 chr11 45840693 45840839 -76003017 - B1_Mus2 SINE Alu 0 147 2 6 934 779 108 9 0 chr11 45841225 45841336 -76002520 + B1_Mur4 SINE Alu 8 119 -31 6 934 384 22 0 0 chr11 45841454 45841499 -76002357 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 934 318 50 0 0 chr11 45841826 45841866 -76001990 + (T)n Simple_repeat Simple_repeat 1 40 0 6 934 256 306 14 0 chr11 45841977 45842049 -76001807 + ID4_ SINE ID 1 73 -10 6 934 244 298 11 67 chr11 45842190 45842280 -76001576 - B3A SINE B2 -16 182 98 6 934 243 246 30 119 chr11 45842288 45842307 -76001549 - B4A SINE B4 -166 126 5 6 934 489 221 78 17 chr11 45842307 45842422 -76001434 - B3A SINE B2 -72 126 5 6 934 189 94 0 0 chr11 45842776 45842808 -76001048 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 6 934 441 291 131 13 chr11 45843461 45843688 -76000168 - L1M4 LINE L1 -541 5818 5553 6 934 337 363 72 41 chr11 45843770 45844060 -75999796 - L1M4 LINE L1 -805 5341 5043 6 934 243 321 11 69 chr11 45844081 45844168 -75999688 - ID4 SINE ID 0 83 2 6 934 413 351 81 14 chr11 45844173 45844384 -75999472 - L1M4 LINE L1 -1098 5048 4824 6 934 972 161 56 0 chr11 45845103 45845283 -75998573 - B2_Mm2 SINE B2 -5 190 1 6 934 298 252 0 90 chr11 45845724 45845871 -75997985 - MIRb SINE MIR -45 163 39 6 934 186 43 0 0 chr11 45846481 45846504 -75997352 + (T)n Simple_repeat Simple_repeat 1 23 0 6 934 464 220 42 11 chr11 45847323 45847441 -75996415 + PB1D9 SINE Alu 1 119 -1 6 934 1224 245 84 81 chr11 45847930 45848299 -75995557 + MTEa LTR MaLR 1 370 -9 6 934 429 20 0 0 chr11 45848301 45848351 -75995505 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 934 826 291 115 46 chr11 45848472 45848976 -75994880 - MER119 DNA MER1_type -4 579 8 6 934 417 335 115 36 chr11 45849023 45849242 -75994614 + L1ME3A LINE L1 4977 5216 -930 6 934 1242 100 25 55 chr11 45849242 45849443 -75994413 - B2_Mm2 SINE B2 0 195 1 6 934 417 349 104 29 chr11 45849443 45849686 -75994170 + L1ME3A LINE L1 5177 5368 -778 6 934 328 247 112 0 chr11 45849777 45849866 -75993990 - ID_B1 SINE B4 -5 219 121 6 934 575 283 104 79 chr11 45850386 45850878 -75992978 + L1ME3A LINE L1 5493 5996 -177 6 934 2463 196 68 55 chr11 45850899 45851460 -75992396 - RMER15 LTR ERVL -7 568 1 6 934 402 332 94 38 chr11 45852011 45852277 -75991579 + B4A SINE B4 3 283 -9 6 934 264 348 11 0 chr11 45853311 45853389 -75990467 - MER45A DNA Tip100 0 178 100 6 934 600 292 0 72 chr11 45853389 45853555 -75990301 + RSINE1 SINE B4 2 155 -10 6 934 21 0 0 0 chr11 45853701 45853722 -75990134 + AT_rich Low_complexity Low_complexity 1 21 0 6 934 1188 42 7 7 chr11 45853922 45854066 -75989790 - B1_Mm SINE Alu -1 146 3 6 934 2386 117 30 25 chr11 45854070 45854466 -75989390 + MTB_Mm LTR MaLR 4 401 -6 6 934 246 361 74 0 chr11 45854544 45854652 -75989204 - Charlie8 DNA MER1_type -2163 265 150 6 934 182 282 27 27 chr11 45854654 45854727 -75989129 + MIRb SINE MIR 127 199 -69 6 934 928 299 137 78 chr11 45854891 45855613 -75988243 + L1MCa LINE L1 1 765 -5743 6 934 917 180 0 0 chr11 45855623 45855773 -75988083 - B1_Mur4 SINE Alu 0 150 1 6 934 403 277 143 0 chr11 45855831 45855950 -75987906 + ID_B1 SINE B4 78 213 -11 6 934 486 0 0 0 chr11 45855950 45856004 -75987852 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 7 934 536 296 137 42 chr11 45856011 45856318 -75987538 + L1MCa LINE L1 822 1157 -5351 6 934 862 201 7 0 chr11 45856321 45856389 -75987467 + ID SINE ID 13 81 -143 7 934 335 223 158 11 chr11 45856389 45856484 -75987372 + PB1 SINE Alu 1 109 -18 7 934 600 232 108 5 chr11 45856511 45856697 -75987159 + L1MCa LINE L1 1179 1383 -5125 6 934 282 266 0 81 chr11 45856709 45856795 -75987061 + ID4_ SINE ID 5 83 0 7 934 1120 95 0 0 chr11 45856920 45857067 -75986789 - B1_Mus2 SINE Alu 0 147 1 7 934 669 180 133 0 chr11 45857072 45857200 -75986656 - B1_Mus2 SINE Alu 0 147 3 7 934 1196 68 0 0 chr11 45857222 45857368 -75986488 - B1_Mus1 SINE Alu 0 148 3 7 934 848 183 71 25 chr11 45857692 45857888 -75985968 - B3 SINE B2 -10 206 2 7 934 337 284 86 35 chr11 45857902 45858100 -75985756 + L1MCa LINE L1 2019 2227 -4281 6 934 645 36 0 0 chr11 45858100 45858184 -75985672 + L1Md_T LINE L1 6499 6582 0 7 934 337 284 86 35 chr11 45858184 45858240 -75985616 + L1MCa LINE L1 2228 2286 -4222 6 934 243 287 41 65 chr11 45858798 45858921 -75984935 + RMER12 LTR ERVK 737 856 -466 7 934 3273 76 51 21 chr11 45859177 45859645 -75984211 - RLTR45 LTR ERVK 0 482 1 7 934 635 252 35 25 chr11 45860099 45860302 -75983554 - RLTR42-int LTR ERVK -4134 1388 1184 7 934 1044 189 59 32 chr11 45861230 45861449 -75982407 - URR1B DNA MER1_type 0 225 1 7 934 2197 86 6 9 chr11 45861832 45862148 -75981708 + L1_Mus4 LINE L1 6316 6630 -6 7 934 527 180 32 48 chr11 45862155 45862342 -75981514 + RMER17C LTR ERVK 91 274 -136 7 934 1234 34 0 20 chr11 45862383 45862533 -75981323 + B1_Mm SINE Alu 1 147 0 7 934 456 104 0 0 chr11 45862541 45862608 -75981248 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 7 934 546 224 0 27 chr11 45862873 45862983 -75980873 + ID_B1 SINE B4 117 223 -1 7 934 285 176 0 0 chr11 45863091 45863165 -75980691 + (CAGA)n Simple_repeat Simple_repeat 2 75 0 7 934 438 250 50 69 chr11 45863378 45863580 -75980276 - L1M5 LINE L1 -303 5821 5624 7 934 729 187 69 143 chr11 45863677 45863867 -75979989 - B3 SINE B2 0 216 43 7 934 1182 74 0 0 chr11 45863867 45864015 -75979841 - B1_Mus1 SINE Alu 0 148 1 7 934 729 187 69 143 chr11 45864015 45864055 -75979801 - B3 SINE B2 -174 42 3 7 934 661 122 37 0 chr11 45864406 45864513 -75979343 - BC1_Mm scRNA scRNA -41 111 1 7 934 445 246 96 73 chr11 45864523 45864659 -75979197 - B4 SINE B4 -72 220 82 7 934 954 0 0 0 chr11 45864666 45864772 -75979084 + (TCTCC)n Simple_repeat Simple_repeat 5 110 0 7 934 417 39 0 0 chr11 45864772 45864822 -75979034 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 7 934 243 61 0 0 chr11 45864822 45864855 -75979001 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 934 192 40 0 0 chr11 45865223 45865248 -75978608 + (CTG)n Simple_repeat Simple_repeat 1 25 0 7 934 182 271 55 41 chr11 45865458 45865531 -75978325 - L4 LINE RTE -1632 397 324 7 934 446 231 78 127 chr11 45865852 45866043 -75977813 - B3A SINE B2 0 198 2 7 934 327 264 0 14 chr11 45866049 45866122 -75977734 - B4A SINE B4 -220 72 1 7 934 503 230 54 54 chr11 45866176 45866305 -75977551 + ID_B1 SINE B4 28 156 -68 7 934 1179 83 13 0 chr11 45866305 45866462 -75977394 + B2_Mm2 SINE B2 1 159 -36 7 934 195 42 0 0 chr11 45866462 45866486 -75977370 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 7 934 424 219 10 40 chr11 45866490 45866590 -75977266 + ID_B1 SINE B4 128 224 0 7 934 1137 78 0 0 chr11 45867009 45867150 -75976706 - B1_Mus1 SINE Alu -7 141 1 7 934 369 0 0 0 chr11 45867192 45867233 -75976623 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 934 327 214 107 0 chr11 45867234 45867318 -75976538 - RSINE1 SINE B4 -71 94 2 7 934 201 74 0 0 chr11 45867413 45867440 -75976416 + (T)n Simple_repeat Simple_repeat 1 27 0 7 934 1176 75 0 0 chr11 45867440 45867586 -75976270 - B1_Mus2 SINE Alu 0 147 2 7 934 495 318 108 33 chr11 45867633 45867939 -75975917 + MLT1A LTR MaLR 7 335 -39 7 934 189 302 10 104 chr11 45868331 45868427 -75975429 + MIRb SINE MIR 83 169 -99 7 934 439 281 67 0 chr11 45868452 45868587 -75975269 - B1F SINE Alu -3 146 3 7 934 916 259 5 0 chr11 45868587 45868669 -75975187 - ID SINE ID -140 84 2 7 934 450 0 0 0 chr11 45869206 45869256 -75974600 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 934 333 0 0 0 chr11 45869948 45869985 -75973871 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 934 301 234 133 18 chr11 45871284 45871397 -75972459 - LTR37B LTR ERV1 -5 463 338 7 934 831 166 21 0 chr11 45872142 45872287 -75971569 - B1_Mur4 SINE Alu -2 148 1 7 934 21 0 0 0 chr11 45872296 45872317 -75971539 + AT_rich Low_complexity Low_complexity 1 21 0 7 934 1196 50 0 0 chr11 45872328 45872467 -75971389 - B1_Mus2 SINE Alu -7 140 2 7 934 25 0 0 0 chr11 45872473 45872498 -75971358 + AT_rich Low_complexity Low_complexity 1 25 0 7 934 1186 82 6 0 chr11 45872778 45872936 -75970920 + B2_Mm1a SINE B2 2 160 -33 7 934 252 0 0 0 chr11 45872936 45872964 -75970892 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 7 934 359 169 17 0 chr11 45873247 45873306 -75970550 + B3A SINE B2 1 60 -138 7 934 230 232 304 0 chr11 45873998 45874110 -75969746 + L2a LINE L2 3073 3218 -208 7 934 982 180 96 0 chr11 45874674 45874852 -75969004 + B3 SINE B2 2 196 -20 7 934 921 57 0 0 chr11 45874857 45874981 -75968875 + (CA)n Simple_repeat Simple_repeat 1 124 0 7 935 192 158 0 0 chr11 45875284 45875322 -75968534 + T-rich Low_complexity Low_complexity 1 38 0 7 935 241 333 0 0 chr11 45876201 45876282 -75967574 + CR1_Mam LINE CR1 1805 1885 -319 7 935 558 43 0 0 chr11 45876344 45876413 -75967443 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 935 516 72 0 0 chr11 45877663 45877732 -75966124 + (TC)n Simple_repeat Simple_repeat 1 69 0 7 935 230 160 39 39 chr11 45877752 45877804 -75966052 - L1M LINE L1 -756 5408 5357 7 935 395 328 23 28 chr11 45878020 45878196 -75965660 - MIRb SINE MIR -19 249 75 7 935 387 0 0 0 chr11 45878893 45878936 -75964920 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 935 1196 228 34 45 chr11 45879706 45880148 -75963708 - RMER15 LTR ERVL -64 511 13 7 935 722 128 62 21 chr11 45880742 45880886 -75962970 + URR1A DNA MER1_type 77 226 0 7 935 188 330 30 40 chr11 45880919 45881020 -75962836 - MIR SINE MIR -71 137 38 7 935 335 119 15 0 chr11 45881196 45881263 -75962593 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 935 234 0 0 0 chr11 45881263 45881288 -75962568 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 935 1200 56 0 0 chr11 45881387 45881531 -75962325 + B1_Mus2 SINE Alu 3 146 -1 7 935 194 0 39 0 chr11 45881543 45881569 -75962287 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 935 839 37 0 9 chr11 45881600 45881708 -75962148 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 7 935 536 224 58 71 chr11 45881709 45881863 -75961993 - B4 SINE B4 -87 205 54 7 935 993 144 0 0 chr11 45881904 45882078 -75961778 + (TTTTC)n Simple_repeat Simple_repeat 2 175 0 7 935 1116 66 0 0 chr11 45882078 45882215 -75961641 - B1_Mus2 SINE Alu -10 137 1 7 935 202 318 95 64 chr11 45882782 45883078 -75960778 - L2a LINE L2 -87 3339 3035 7 935 233 359 74 47 chr11 45883590 45883739 -75960117 + MIRb SINE MIR 116 268 0 7 935 1032 200 54 0 chr11 45883962 45884167 -75959689 - B3 SINE B2 0 216 1 7 935 209 319 14 0 chr11 45884436 45884505 -75959351 + MIR3 SINE MIR 109 178 -30 7 935 897 202 27 36 chr11 45885032 45885253 -75958603 + ID_B1 SINE B4 2 220 -4 7 935 465 225 137 15 chr11 45885432 45885563 -75958293 + B1_Mur4 SINE Alu 4 150 0 7 935 521 115 11 0 chr11 45885887 45885974 -75957882 + (TC)n Simple_repeat Simple_repeat 2 89 0 7 935 334 333 0 9 chr11 45885986 45886098 -75957758 - PB1D7 SINE Alu -1 119 9 7 935 469 286 140 5 chr11 45886430 45886616 -75957240 - MER121 Unknown Unknown -93 319 109 7 935 254 312 130 14 chr11 45887098 45887244 -75956612 + MLT1A0 LTR MaLR 1 163 -202 7 935 374 269 3 25 chr11 45887275 45887404 -75956452 + MLT1A0 LTR MaLR 265 385 -5 7 935 198 0 0 0 chr11 45887584 45887606 -75956250 + (T)n Simple_repeat Simple_repeat 1 22 0 7 935 1115 62 14 0 chr11 45887606 45887750 -75956106 - B1_Mus1 SINE Alu 0 148 3 7 935 253 333 0 20 chr11 45887887 45887985 -75955871 + MLT1A0 LTR MaLR 368 463 -42 7 935 910 210 106 15 chr11 45888105 45888303 -75955553 - B3 SINE B2 0 216 1 7 935 23 0 0 0 chr11 45888308 45888331 -75955525 + AT_rich Low_complexity Low_complexity 1 23 0 7 935 620 136 0 8 chr11 45888339 45888465 -75955391 + (TC)n Simple_repeat Simple_repeat 2 126 0 7 935 1106 148 4 4 chr11 45888466 45888951 -75954905 + (TG)n Simple_repeat Simple_repeat 1 485 0 7 935 248 306 28 0 chr11 45888951 45889023 -75954833 - ID4_ SINE ID -6 77 4 7 935 289 262 28 37 chr11 45889042 45889149 -75954707 - PB1D10 SINE Alu -7 110 5 7 935 297 0 0 0 chr11 45889583 45889616 -75954240 + (CAGT)n Simple_repeat Simple_repeat 2 34 0 7 935 198 0 0 0 chr11 45889684 45889706 -75954150 + (TC)n Simple_repeat Simple_repeat 2 23 0 7 935 694 273 89 16 chr11 45889760 45890017 -75953839 - B4 SINE B4 -16 276 1 7 935 1648 208 18 42 chr11 45890131 45890513 -75953343 - ORR1D1 LTR MaLR 0 374 2 7 935 1156 222 72 91 chr11 45890619 45891005 -75952851 + MTE2b LTR MaLR 1 379 0 7 935 312 267 154 7 chr11 45891021 45891157 -75952699 + MIRb SINE MIR 113 268 0 7 935 1540 226 102 20 chr11 45892004 45892357 -75951499 + MTD LTR MaLR 1 382 -37 7 935 204 122 0 0 chr11 45892420 45892461 -75951395 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 935 466 363 75 7 chr11 45892543 45892770 -75951086 - B4A SINE B4 -53 239 2 7 935 976 219 24 5 chr11 45893155 45893366 -75950490 - B3 SINE B2 0 216 2 8 935 234 0 0 0 chr11 45893450 45893476 -75950380 + (CCG)n Simple_repeat Simple_repeat 1 26 0 8 935 455 244 81 25 chr11 45893493 45893653 -75950203 - MTEa LTR MaLR -2 377 209 8 935 553 219 178 29 chr11 45893959 45894133 -75949723 + MLT1C LTR MaLR 1 200 -267 8 935 428 258 11 0 chr11 45894156 45894249 -75949607 - RSINE1 SINE B4 -67 98 5 8 935 315 0 0 0 chr11 45894353 45894388 -75949468 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 8 935 265 260 52 0 chr11 45894418 45894495 -75949361 + MLT1C LTR MaLR 373 453 -14 8 935 243 306 12 12 chr11 45894596 45894682 -75949174 + CT-rich Low_complexity Low_complexity 2 87 0 8 935 364 264 49 126 chr11 45894697 45894840 -75949016 - ID_B1 SINE B4 -9 215 84 8 935 365 313 45 39 chr11 45894844 45895000 -75948856 - L1MB8 LINE L1 -274 5904 5748 8 935 417 20 0 0 chr11 45895785 45895835 -75948021 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 8 935 229 311 0 0 chr11 45896123 45896184 -75947672 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 935 219 36 0 0 chr11 45896345 45896373 -75947483 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 935 538 287 60 93 chr11 45896424 45896724 -75947132 - B4 SINE B4 0 292 3 8 935 281 276 111 33 chr11 45896768 45896948 -75946908 - L2c LINE L2 -6 3381 3188 8 935 474 265 204 22 chr11 45897731 45897962 -75945894 - B4A SINE B4 -18 274 2 8 935 276 247 0 47 chr11 45898642 45898727 -75945129 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 935 221 235 20 0 chr11 45898969 45899020 -75944836 + MIRm SINE MIR 221 272 -4 8 935 180 146 188 0 chr11 45899250 45899298 -75944558 + MIRm SINE MIR 106 162 -114 8 935 381 117 0 32 chr11 45901569 45901631 -75942225 + B1_Mus1 SINE Alu 1 60 -88 8 935 282 208 76 25 chr11 45901653 45901732 -75942124 + RLTR25B LTR ERVK 427 509 -519 8 935 787 83 0 9 chr11 45901667 45901776 -75942080 + B1_Mus2 SINE Alu 40 147 0 8 935 1071 83 14 0 chr11 45901780 45901924 -75941932 + B1_Mus2 SINE Alu 1 146 -1 8 935 220 109 43 21 chr11 45901925 45901972 -75941884 + A-rich Low_complexity Low_complexity 3 50 0 8 935 554 264 67 6 chr11 45902434 45902598 -75941258 - B3 SINE B2 -42 174 1 8 935 181 271 0 78 chr11 45903595 45903659 -75940197 + MIRb SINE MIR 134 192 -76 8 935 270 235 26 133 chr11 45903806 45903919 -75939937 - MER5A DNA MER1_type -26 163 63 8 935 750 237 56 69 chr11 45903943 45904174 -75939682 - B4A SINE B4 -26 266 39 8 935 954 155 7 0 chr11 45904212 45904360 -75939496 - B1_Mur4 SINE Alu -1 149 1 8 935 537 16 0 0 chr11 45904714 45904776 -75939080 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 935 940 249 0 40 chr11 45905176 45905402 -75938454 + ID_B1 SINE B4 1 217 -7 8 935 307 268 117 58 chr11 45906042 45906277 -75937579 - L1M5 LINE L1 -2833 3313 3073 8 935 225 0 0 0 chr11 45906277 45906302 -75937554 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 8 935 201 39 0 0 chr11 45906498 45906524 -75937332 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 935 257 167 19 0 chr11 45906526 45906580 -75937276 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 935 363 314 148 25 chr11 45906580 45906776 -75937080 - L1MC3 LINE L1 -1139 6646 6427 8 935 947 142 0 0 chr11 45907930 45908078 -75935778 - B1_Mus1 SINE Alu 0 148 1 8 935 826 170 203 0 chr11 45908647 45908829 -75935027 + URR1B DNA MER1_type 5 223 -2 8 935 182 305 156 52 chr11 45909679 45909814 -75934042 + MIR3 SINE MIR 16 164 -44 8 935 186 220 58 39 chr11 45909869 45909921 -75933935 - MIR SINE MIR -101 161 109 8 935 228 294 29 14 chr11 45910115 45910184 -75933672 + MIRb SINE MIR 123 192 -76 8 935 201 74 0 0 chr11 45911592 45911619 -75932237 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 8 935 1056 106 7 0 chr11 45911620 45911762 -75932094 - B1_Mur3 SINE Alu -6 143 1 8 935 1116 237 78 42 chr11 45911960 45912317 -75931539 - ORR1D2 LTR MaLR 0 370 1 8 935 553 324 55 123 chr11 45912589 45912987 -75930869 - MLT1B LTR MaLR -19 371 1 8 935 276 335 90 32 chr11 45913069 45913257 -75930599 + MIRc SINE MIR 61 259 -9 8 935 783 129 61 61 chr11 45913593 45913741 -75930115 + B1_Mur4 SINE Alu 2 149 -1 8 935 692 327 92 64 chr11 45913752 45914265 -75929591 - MER74A LTR ERVL -22 536 10 8 935 783 206 55 0 chr11 45914486 45914632 -75929224 - B3 SINE B2 -62 154 1 8 935 324 106 277 71 chr11 45915050 45915162 -75928694 - B2_Mm1t SINE B2 -5 188 54 8 935 1270 73 16 22 chr11 45915199 45915381 -75928475 - B2_Mm1t SINE B2 -12 181 1 8 935 962 148 168 64 chr11 45916301 45916503 -75927353 - URR1B DNA MER1_type -2 223 1 8 935 1103 287 32 3 chr11 45918387 45918670 -75925186 + B4 SINE B4 1 291 -1 8 935 462 79 0 0 chr11 45918712 45918775 -75925081 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 935 369 301 62 56 chr11 45918809 45918953 -75924903 - RSINE1 SINE B4 -19 146 2 8 935 212 303 12 62 chr11 45918966 45919047 -75924809 + MIRb SINE MIR 114 190 -78 8 935 399 192 73 24 chr11 45919253 45919376 -75924480 - URR1B DNA MER1_type 0 225 97 8 935 207 202 117 43 chr11 45919436 45919513 -75924343 - MIRm SINE MIR -186 90 5 8 935 194 240 20 0 chr11 45919684 45919734 -75924122 - L2c LINE L2 -229 3158 3108 8 935 2522 132 50 26 chr11 45920387 45920807 -75923049 - RLTR23 LTR ERV1 0 430 1 8 935 318 294 90 56 chr11 45921007 45921151 -75922705 + MIRb SINE MIR 112 260 -8 8 935 2205 185 14 29 chr11 45921219 45921676 -75922180 + RLTR11A2 LTR ERVK 69 527 0 8 935 509 129 0 0 chr11 45921679 45921749 -75922107 - tRNA-Lys-AAG tRNA tRNA 0 76 7 8 935 374 170 70 70 chr11 45921752 45921866 -75921990 + MYSERV6-int LTR ERVK 6542 6655 -2304 8 935 518 256 8 97 chr11 45922267 45922401 -75921455 + B1_Mur3 SINE Alu 18 139 -10 8 935 541 216 7 138 chr11 45922527 45922672 -75921184 + B1_Mur3 SINE Alu 18 143 -6 8 935 201 317 33 16 chr11 45923336 45923397 -75920459 + MIR SINE MIR 35 96 -166 8 935 260 342 13 0 chr11 45924800 45924879 -75918977 + MER2 DNA MER2_type 1 79 -266 8 935 854 214 22 11 chr11 45924988 45925168 -75918688 - B3A SINE B2 -16 182 1 8 935 333 0 0 0 chr11 45925178 45925215 -75918641 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 8 935 1012 113 21 0 chr11 45925223 45925364 -75918492 - B1_Mur4 SINE Alu -2 148 5 8 935 594 295 18 0 chr11 45925371 45925537 -75918319 + MER2 DNA MER2_type 165 333 -12 8 935 283 300 81 34 chr11 45925744 45925948 -75917908 - MIRb SINE MIR -36 226 7 8 935 255 253 41 62 chr11 45926089 45926186 -75917670 + Charlie4z DNA MER1_type 70 164 -3 8 935 480 35 0 0 chr11 45926572 45926630 -75917226 + (TC)n Simple_repeat Simple_repeat 2 59 0 8 935 599 274 14 34 chr11 45927663 45927853 -75916003 + MER5A DNA MER1_type 9 189 0 8 935 303 28 0 0 chr11 45929690 45929726 -75914130 + (CAAG)n Simple_repeat Simple_repeat 3 38 0 8 935 261 284 0 15 chr11 45930222 45930290 -75913566 + MER58C DNA MER1_type 149 215 0 8 935 1285 27 0 0 chr11 45931230 45931376 -75912480 - B1_Mus2 SINE Alu -1 146 1 8 935 923 135 28 7 chr11 45932938 45933080 -75910776 + B1_Mus1 SINE Alu 1 145 -3 8 935 342 67 0 0 chr11 45933989 45934034 -75909822 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 935 261 242 113 21 chr11 45934089 45934186 -75909670 + MIRm SINE MIR 31 136 -140 8 935 216 0 0 0 chr11 45934309 45934333 -75909523 + (T)n Simple_repeat Simple_repeat 1 24 0 8 935 754 291 49 39 chr11 45934344 45934630 -75909226 + B4A SINE B4 2 290 -2 8 935 207 0 0 0 chr11 45935598 45935621 -75908235 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 8 935 330 293 54 157 chr11 45937104 45937270 -75906586 - B1F2 SINE Alu 0 149 1 8 935 841 268 36 0 chr11 45937270 45937344 -75906512 - ID SINE ID -143 81 1 8 935 309 51 0 0 chr11 45937602 45937641 -75906215 + (TA)n Simple_repeat Simple_repeat 1 39 0 8 935 728 207 36 0 chr11 45937650 45937790 -75906066 - B1_Mur2 SINE Alu -2 147 3 8 935 552 271 0 8 chr11 45937822 45937945 -75905911 - PB1 SINE Alu 0 127 6 8 935 930 100 63 14 chr11 45938269 45938411 -75905445 + B1_Mur4 SINE Alu 2 150 0 8 935 200 111 28 0 chr11 45938412 45938448 -75905408 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 8 935 187 212 143 66 chr11 45939375 45939466 -75904390 - L4 LINE RTE -1519 510 413 8 935 587 245 121 33 chr11 45939750 45939965 -75903891 - MER44A DNA MER2_type -94 245 12 8 935 1694 50 135 20 chr11 45940197 45940441 -75903415 - L1_Mus4 LINE L1 0 6636 6365 8 935 181 250 0 0 chr11 45941390 45941430 -75902426 + L3 LINE CR1 4107 4146 -343 8 935 204 40 0 0 chr11 45941584 45941609 -75902247 + (GAA)n Simple_repeat Simple_repeat 1 25 0 8 935 392 235 0 23 chr11 45941806 45941893 -75901963 - RSINE1 SINE B4 -71 94 10 8 935 241 236 0 16 chr11 45942673 45942802 -75901054 + (TA)n Simple_repeat Simple_repeat 1 127 0 8 935 364 221 8 16 chr11 45942883 45943012 -75900844 + (TATATG)n Simple_repeat Simple_repeat 5 132 0 8 935 320 257 0 0 chr11 45943012 45943082 -75900774 - B1F SINE Alu 0 149 80 8 935 298 337 217 11 chr11 45943201 45943376 -75900480 - MIRb SINE MIR -32 236 26 8 935 1171 50 0 0 chr11 45943457 45943596 -75900260 - B1_Mus2 SINE Alu -8 139 1 9 935 225 364 63 43 chr11 45943613 45943820 -75900036 + MER46C DNA MER2_type 31 241 -97 9 935 220 320 12 123 chr11 45944277 45944448 -75899408 + MIRb SINE MIR 84 235 -33 9 935 493 322 13 33 chr11 45944476 45944627 -75899229 + B1F1 SINE Alu 1 148 -1 9 935 256 235 37 0 chr11 45945549 45945630 -75898226 + L1MC LINE L1 5349 5432 -2450 9 935 3269 57 7 5 chr11 45945722 45946126 -75897730 - MTB_Mm LTR MaLR 0 407 3 9 935 2525 235 133 96 chr11 45946204 45946687 -75897169 - RCHARR1 DNA MER1_type -8 966 518 9 935 616 204 83 0 chr11 45946687 45946819 -75897037 - B1_Mur1 SINE Alu -6 143 1 9 935 185 0 40 0 chr11 45946825 45946850 -75897006 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 935 2525 235 133 96 chr11 45946850 45947288 -75896568 - RCHARR1 DNA MER1_type -457 517 3 9 935 308 177 8 193 chr11 45948295 45948414 -75895442 + MT2B LTR ERVL 162 258 -343 9 935 651 181 7 80 chr11 45948310 45948448 -75895408 + B1_Mur3 SINE Alu 9 136 -13 9 935 278 50 0 24 chr11 45949035 45949076 -75894780 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 9 935 558 114 0 0 chr11 45949076 45949163 -75894693 + (CA)n Simple_repeat Simple_repeat 2 89 0 9 935 1196 93 63 11 chr11 45949163 45949337 -75894519 + B2_Mm1t SINE B2 2 184 -9 9 935 1247 48 0 0 chr11 45950157 45950303 -75893553 + B1_Mus2 SINE Alu 2 147 0 9 935 282 116 0 0 chr11 45950305 45950348 -75893508 + (GGA)n Simple_repeat Simple_repeat 3 45 0 9 935 645 14 0 0 chr11 45950340 45950414 -75893442 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 9 935 237 310 0 121 chr11 45951731 45951830 -75892026 + MT2B2 LTR ERVL 155 241 -343 9 935 551 211 13 51 chr11 45951741 45951871 -75891985 + PB1D7 SINE Alu 1 136 -13 9 935 304 326 113 75 chr11 45952537 45952723 -75891133 - MER117 DNA MER1_type -2 195 3 9 935 795 204 20 0 chr11 45953890 45954037 -75889819 + B1_Mur4 SINE Alu 1 150 0 9 935 186 43 0 0 chr11 45954046 45954069 -75889787 + (CTG)n Simple_repeat Simple_repeat 1 23 0 9 935 312 91 0 0 chr11 45954070 45954114 -75889742 + (CAT)n Simple_repeat Simple_repeat 3 46 0 9 935 258 343 29 29 chr11 45954227 45954240 -75889616 + L2c LINE L2 3070 3080 -307 9 935 293 0 27 0 chr11 45954240 45954277 -75889579 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 935 258 343 29 29 chr11 45954277 45954401 -75889455 + L2c LINE L2 3081 3207 -180 9 935 712 260 0 0 chr11 45955167 45955313 -75888543 + B1_Mur3 SINE Alu 1 146 -3 9 935 287 254 16 0 chr11 45955581 45955644 -75888212 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 935 195 42 0 0 chr11 45955645 45955669 -75888187 + (TC)n Simple_repeat Simple_repeat 1 24 0 9 935 453 36 0 0 chr11 45955669 45955723 -75888133 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 935 243 88 0 0 chr11 45956075 45956109 -75887747 + (T)n Simple_repeat Simple_repeat 1 34 0 9 935 379 254 28 0 chr11 45956127 45956198 -75887658 - B1_Mur3 SINE Alu -71 78 6 9 935 393 22 0 0 chr11 45958023 45958069 -75885787 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 9 935 492 18 0 0 chr11 45958254 45958311 -75885545 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 935 556 189 121 57 chr11 45959742 45959882 -75883974 + B1_Mur3 SINE Alu 1 149 0 9 935 505 224 197 22 chr11 45959886 45960064 -75883792 - ID_B1 SINE B4 -13 211 3 9 935 359 287 57 98 chr11 45960216 45960409 -75883447 + MER92B LTR ERV1 452 636 0 9 935 2398 114 26 0 chr11 45961374 45961724 -75882132 + ORR1B2 LTR MaLR 1 359 -8 9 935 513 0 0 0 chr11 45962387 45962444 -75881412 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 935 302 261 32 169 chr11 45964326 45964603 -75879253 + MIRc SINE MIR 24 259 -3 9 935 1135 223 141 5 chr11 45965155 45965505 -75878351 + MTD LTR MaLR 6 421 0 9 935 181 407 33 17 chr11 45965505 45965625 -75878231 - L3 LINE CR1 -21 4468 4347 9 935 473 308 19 19 chr11 45965842 45966001 -75877855 - MIRb SINE MIR -90 178 20 9 935 725 205 40 60 chr11 45966187 45966370 -75877486 + MTD LTR MaLR 12 231 -188 9 935 1552 59 0 0 chr11 45966418 45966605 -75877251 + B2_Mm1a SINE B2 1 187 -6 9 935 194 274 20 0 chr11 45967235 45967286 -75876570 + MIRc SINE MIR 76 127 -141 9 935 946 226 32 96 chr11 45967562 45967812 -75876044 + B4A SINE B4 41 274 -18 9 935 293 100 20 0 chr11 45968634 45968684 -75875172 + (TTG)n Simple_repeat Simple_repeat 2 52 0 9 935 732 264 112 56 chr11 45968750 45969018 -75874838 + MTD LTR MaLR 121 419 0 9 935 1042 234 69 19 chr11 45969237 45969498 -75874358 + B4A SINE B4 1 274 -18 9 935 234 91 0 0 chr11 45969585 45969618 -75874238 + (CCA)n Simple_repeat Simple_repeat 1 33 0 9 935 22 0 0 0 chr11 45969618 45969640 -75874216 + AT_rich Low_complexity Low_complexity 1 22 0 9 935 867 244 17 0 chr11 45969872 45970048 -75873808 - ID_B1 SINE B4 -45 179 1 9 935 241 321 0 67 chr11 45970094 45970184 -75873672 - LTR86A1 LTR ERVL -115 398 315 9 935 187 305 51 0 chr11 45970436 45970495 -75873361 + L2b LINE L2 2351 2412 -1007 9 935 1055 69 0 0 chr11 45970799 45970930 -75872926 + B1_Mus1 SINE Alu 3 133 -15 9 935 258 32 0 0 chr11 45970944 45970975 -75872881 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 9 935 998 240 23 0 chr11 45971809 45972026 -75871830 - ID_B1 SINE B4 -1 223 2 9 935 22 0 0 0 chr11 45972410 45972432 -75871424 + AT_rich Low_complexity Low_complexity 1 22 0 9 935 1235 34 7 0 chr11 45972432 45972581 -75871275 - MTA_Mm LTR MaLR -57 339 190 9 935 244 355 0 0 chr11 45972688 45972764 -75871092 - BC1_Mm scRNA scRNA -62 90 15 9 935 369 216 90 49 chr11 45972790 45972820 -75871036 + ORR1A3-int LTR MaLR 579 613 -1350 9 935 4220 94 5 37 chr11 45972820 45973439 -75870417 + MT2B LTR ERVL 1 599 -2 9 935 277 172 138 15 chr11 45973461 45973526 -75870330 - B1F1 SINE Alu -49 100 28 9 935 928 206 265 33 chr11 45973554 45973860 -75869996 + MTD LTR MaLR 43 419 0 9 935 247 304 0 107 chr11 45973912 45973950 -75869906 - MIRm SINE MIR -126 150 118 9 935 1378 52 0 0 chr11 45973950 45974122 -75869734 + L1_Mus2 LINE L1 6395 6566 0 9 935 247 304 11 103 chr11 45974122 45974210 -75869646 - MIRm SINE MIR -151 117 31 9 935 315 286 196 37 chr11 45974235 45974562 -75869294 + L2b LINE L2 2445 2823 -596 9 935 213 237 50 48 chr11 45974819 45974899 -75868957 + L2b LINE L2 3303 3423 -3 9 935 261 0 0 0 chr11 45975839 45975868 -75867988 + (TC)n Simple_repeat Simple_repeat 2 30 0 9 935 200 59 29 0 chr11 45975868 45975902 -75867954 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 935 956 134 0 0 chr11 45975904 45976046 -75867810 - B1_Mus1 SINE Alu -6 142 1 9 935 270 261 109 70 chr11 45976128 45976256 -75867600 + MTE2a LTR MaLR 5 137 -242 9 935 678 295 91 51 chr11 45976191 45976541 -75867315 + MT2A LTR ERVL 69 432 -101 9 935 226 245 0 0 chr11 45976655 45976704 -75867152 + MLT2B1 LTR ERVL 519 567 0 9 935 199 228 0 50 chr11 45978525 45978585 -75865271 + MIRc SINE MIR 100 156 -112 9 935 306 260 0 49 chr11 45978649 45978730 -75865126 + ID4_ SINE ID 5 81 -2 9 935 180 0 0 0 chr11 45978772 45978792 -75865064 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 935 376 310 126 7 chr11 45978815 45978958 -75864898 + RSINE1 SINE B4 4 163 -2 9 935 207 0 0 0 chr11 45978973 45978996 -75864860 + (GA)n Simple_repeat Simple_repeat 1 23 0 9 935 226 357 20 30 chr11 45979047 45979148 -75864708 + ID_B1 SINE B4 78 177 -47 9 935 255 311 128 28 chr11 45979058 45979167 -75864689 + PB1D10 SINE Alu 7 123 -4 9 935 27 29 0 0 chr11 45980476 45980510 -75863346 + AT_rich Low_complexity Low_complexity 1 34 0 9 935 204 40 0 0 chr11 45980591 45980616 -75863240 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 935 424 219 0 37 chr11 45980640 45980749 -75863107 + L1MA9 LINE L1 6173 6277 -35 9 935 417 248 203 7 chr11 45980767 45980905 -75862951 - RSINE1 SINE B4 0 165 1 9 935 313 347 82 0 chr11 45981065 45981235 -75862621 - MIR SINE MIR -21 241 58 9 935 1655 230 33 19 chr11 45981236 45981600 -75862256 + Lx5 LINE L1 6663 7031 -19 9 935 192 77 0 0 chr11 45981600 45981626 -75862230 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 9 935 318 307 224 29 chr11 45982132 45982377 -75861479 - Zaphod DNA Tip100 -3511 520 228 9 935 920 254 56 63 chr11 45982515 45982801 -75861055 - B4A SINE B4 0 292 9 9 935 577 184 56 0 chr11 45982809 45982934 -75860922 - L1MA9 LINE L1 -36 6276 6145 9 935 216 103 26 0 chr11 45982984 45983023 -75860833 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 9 935 1209 34 0 39 chr11 45983024 45983177 -75860679 - B1_Mus2 SINE Alu 0 147 1 9 935 362 323 12 99 chr11 45984015 45984187 -75859669 - MER20 DNA MER1_type -21 198 42 9 935 22 0 0 0 chr11 45984234 45984256 -75859600 + AT_rich Low_complexity Low_complexity 1 22 0 9 935 225 271 94 39 chr11 45984313 45984440 -75859416 - MIRc SINE MIR -127 141 8 9 935 254 321 197 8 chr11 45984565 45984697 -75859159 - MIRc SINE MIR -66 202 46 9 935 261 344 55 61 chr11 45985366 45985530 -75858326 - MIR3 SINE MIR -41 167 5 9 935 288 302 128 24 chr11 45985589 45985775 -75858081 - MIR SINE MIR -49 219 32 9 935 410 277 108 8 chr11 45986127 45986247 -75857609 - RSINE1 SINE B4 -28 137 6 9 935 957 152 0 0 chr11 45987743 45987981 -75855875 + (TA)n Simple_repeat Simple_repeat 1 238 0 9 935 1586 48 5 0 chr11 45988011 45988199 -75855657 - B2_Mm1t SINE B2 -3 190 2 9 935 233 222 125 0 chr11 45988343 45988415 -75855441 + Tigger10 DNA Tigger 602 682 -1161 1 935 233 298 93 23 chr11 45988458 45988544 -75855312 + MIRc SINE MIR 74 165 -43 1 935 360 235 114 57 chr11 45988624 45988764 -75855092 - MIR SINE MIR -81 181 34 1 935 718 207 11 0 chr11 45988997 45989171 -75854685 + GA-rich Low_complexity Low_complexity 2 177 0 1 935 372 218 126 0 chr11 45989192 45989279 -75854577 - ID_B1 SINE B4 -13 211 114 1 935 246 247 28 160 chr11 45989279 45989298 -75854558 - PB1D9 SINE Alu -13 107 16 1 935 335 322 87 7 chr11 45989915 45990065 -75853791 - MER103 DNA DNA -2 164 3 1 935 184 362 11 11 chr11 45990100 45990195 -75853661 - MIRb SINE MIR -81 187 93 1 935 189 333 68 49 chr11 45990269 45990474 -75853382 + MIRb SINE MIR 41 249 -19 1 935 215 379 17 8 chr11 45990741 45990858 -75852998 + MIRb SINE MIR 26 143 -125 1 935 275 333 24 31 chr11 45990930 45991057 -75852799 - L2a LINE L2 -7 3419 3294 1 935 244 373 116 23 chr11 45991069 45991242 -75852614 + MLT1M LTR MaLR 408 596 -76 1 935 180 0 0 0 chr11 45991594 45991614 -75852242 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 1 935 381 255 27 73 chr11 45992106 45992216 -75851640 - PB1D10 SINE Alu -1 116 12 1 935 399 56 0 0 chr11 45992351 45992405 -75851451 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 935 31 58 0 0 chr11 45992433 45992485 -75851371 + AT_rich Low_complexity Low_complexity 1 52 0 1 935 933 135 7 0 chr11 45992488 45992629 -75851227 - B1_Mur4 SINE Alu -6 144 3 1 935 362 301 68 97 chr11 45993069 45993179 -75850677 - B4A SINE B4 -92 200 83 1 935 309 26 0 0 chr11 45993179 45993217 -75850639 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 935 362 301 68 97 chr11 45993217 45993312 -75850544 - B4A SINE B4 -210 82 1 1 935 254 245 88 39 chr11 45993322 45993424 -75850432 - L1M5 LINE L1 -439 5685 5579 1 935 1418 235 50 29 chr11 45993548 45993969 -75849887 - Lx9 LINE L1 -1 7643 7214 1 935 368 322 64 89 chr11 45994113 45994348 -75849508 + MLT1D LTR MaLR 277 505 0 1 935 189 132 0 0 chr11 45994808 45994846 -75849010 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 935 1253 34 0 7 chr11 45994849 45994997 -75848859 - B1_Mus1 SINE Alu 0 148 2 1 935 2765 139 6 41 chr11 45995527 45996013 -75847843 - Lx LINE L1 0 6654 6186 1 935 4765 236 70 40 chr11 45996073 45996326 -75847530 + Lx7 LINE L1 5897 6143 -1553 1 935 393 22 0 0 chr11 45996326 45996372 -75847484 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 935 4765 236 70 40 chr11 45996372 45997537 -75846319 + Lx7 LINE L1 6144 7358 -338 1 935 241 169 67 78 chr11 45997559 45997649 -75846207 + Lx8 LINE L1 7351 7439 -34 1 935 1410 76 0 0 chr11 45997812 45998075 -75845781 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 1 935 458 204 16 66 chr11 45998075 45998185 -75845671 - PB1D9 SINE Alu -10 110 5 1 935 315 289 122 10 chr11 45999324 45999520 -75844336 - Zaphod DNA Tip100 -41 3990 3773 1 935 1429 78 10 10 chr11 45999584 45999777 -75844079 - B2_Mm2 SINE B2 -1 194 2 1 935 309 125 0 0 chr11 45999811 45999867 -75843989 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 935 536 242 39 8 chr11 45999868 45999997 -75843859 - B3A SINE B2 -14 184 52 1 935 259 114 64 64 chr11 46000000 46000047 -75843809 - B3 SINE B2 -168 48 2 1 935 493 194 42 6 chr11 46000066 46000232 -75843624 + CT-rich Low_complexity Low_complexity 1 172 0 2 935 752 147 85 0 chr11 46000232 46000361 -75843495 - B1_Mus1 SINE Alu -1 147 8 3 935 801 328 155 55 chr11 46000404 46000842 -75843014 - Zaphod DNA Tip100 -455 3576 3088 4 935 1209 54 0 0 chr11 46000842 46000989 -75842867 - B1_Mm SINE Alu 0 147 1 5 935 801 328 155 55 chr11 46000989 46001537 -75842319 - Zaphod DNA Tip100 -944 3087 2491 4 935 576 0 0 0 chr11 46001812 46001876 -75841980 + (TCCCC)n Simple_repeat Simple_repeat 2 65 0 6 935 542 285 136 8 chr11 46002067 46002442 -75841414 - L1M4c LINE L1 -3494 3351 2929 7 935 215 241 103 69 chr11 46002454 46002512 -75841344 + B1_Mur3 SINE Alu 3 62 -87 8 935 289 235 108 23 chr11 46002559 46002771 -75841085 - L1M4c LINE L1 -3938 2907 2671 7 935 459 306 58 32 chr11 46003026 46003368 -75840488 - L1M4c LINE L1 -4649 2201 1911 7 935 617 273 37 106 chr11 46003414 46003494 -75840362 - B4A SINE B4 -4 288 87 9 935 829 156 15 15 chr11 46003494 46003631 -75840225 - B1_Mus2 SINE Alu -9 138 2 1 935 738 296 75 9 chr11 46003631 46003837 -75840019 - B4A SINE B4 -64 228 8 1 935 8221 27 1 6 chr11 46003927 46005360 -75838496 - L1Md_F2 LINE L1 0 6582 5156 1 935 303 240 118 20 chr11 46005360 46005462 -75838394 - L1M4c LINE L1 -5000 1850 1739 7 935 324 152 0 0 chr11 46005462 46005498 -75838358 + T-rich Low_complexity Low_complexity 24 59 0 1 935 1125 55 20 20 chr11 46005498 46005645 -75838211 - B1_Mm SINE Alu 0 147 1 1 935 324 152 0 0 chr11 46005645 46005667 -75838189 + T-rich Low_complexity Low_complexity 2 23 0 1 935 235 250 201 7 chr11 46005717 46005866 -75837990 - L1M4c LINE L1 -4899 1880 1703 7 936 202 333 57 11 chr11 46006418 46006506 -75837350 + MIRm SINE MIR 28 119 -157 1 936 481 315 34 24 chr11 46006753 46006958 -75836898 - B4A SINE B4 -85 207 1 1 936 270 81 0 0 chr11 46006975 46007012 -75836844 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 936 972 114 0 0 chr11 46007023 46007163 -75836693 - B1_Mur4 SINE Alu 0 150 11 1 936 393 266 13 73 chr11 46007029 46007179 -75836677 - B4A SINE B4 -71 221 81 2 936 198 0 0 0 chr11 46009752 46009774 -75834082 + (TCC)n Simple_repeat Simple_repeat 1 22 0 2 936 475 320 83 32 chr11 46010128 46010467 -75833389 + L1M4 LINE L1 4723 5078 -1068 2 936 527 293 43 7 chr11 46010592 46010733 -75833123 + RSINE1 SINE B4 1 146 -19 2 936 213 39 0 0 chr11 46010741 46010767 -75833089 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 936 1234 278 115 14 chr11 46010868 46011441 -75832415 + L1MB3 LINE L1 5507 6137 -46 2 936 410 125 13 77 chr11 46011536 46011614 -75832242 - URR1B DNA MER1_type -9 216 144 2 936 1245 48 0 20 chr11 46011622 46011772 -75832084 + B1_Mus2 SINE Alu 1 147 0 2 936 787 192 19 44 chr11 46011827 46011985 -75831871 - URR1B DNA MER1_type -72 153 1 2 936 230 296 72 0 chr11 46012907 46012991 -75830865 - B4 SINE B4 -90 202 108 2 936 735 268 0 54 chr11 46013015 46013220 -75830636 - B3A SINE B2 -3 195 2 2 936 273 192 243 14 chr11 46013224 46013298 -75830558 - B4 SINE B4 -200 92 2 3 936 310 284 13 13 chr11 46014686 46014761 -75829095 + B4 SINE B4 40 114 -178 3 936 214 200 105 35 chr11 46014877 46014934 -75828922 - MIRb SINE MIR -90 178 118 3 936 1486 83 0 5 chr11 46015001 46015195 -75828661 - B2_Mm2 SINE B2 -2 193 1 3 936 329 290 49 82 chr11 46016511 46016695 -75827161 - L1ME4a LINE L1 -2 6122 5945 3 936 879 140 14 34 chr11 46016979 46017127 -75826729 + B1_Mur4 SINE Alu 1 145 -5 3 936 186 43 0 0 chr11 46017148 46017171 -75826685 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 3 936 207 0 0 0 chr11 46017184 46017207 -75826649 + (T)n Simple_repeat Simple_repeat 1 23 0 3 936 999 230 47 25 chr11 46017497 46017774 -75826082 - B4A SINE B4 -8 284 2 3 936 375 23 0 0 chr11 46018063 46018107 -75825749 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 936 181 269 56 69 chr11 46018363 46018435 -75825421 - MIRc SINE MIR -95 173 103 4 936 716 275 12 6 chr11 46018720 46018881 -75824975 - RSINE1 SINE B4 -3 162 1 4 936 2035 152 144 0 chr11 46019949 46020317 -75823539 + MTC LTR MaLR 1 421 0 4 936 404 218 167 16 chr11 46020711 46020837 -75823019 + MIR3 SINE MIR 11 155 -53 4 936 189 367 0 0 chr11 46021178 46021238 -75822618 + L3 LINE CR1 4328 4387 -102 4 936 512 219 19 0 chr11 46021275 46021380 -75822476 + B4A SINE B4 127 233 -59 4 936 469 273 12 106 chr11 46021522 46021682 -75822174 + B4A SINE B4 49 193 -99 4 936 201 236 115 26 chr11 46021971 46022048 -75821808 + MIRm SINE MIR 80 156 -52 4 936 357 289 149 0 chr11 46022168 46022282 -75821574 + B4 SINE B4 125 255 -37 4 936 279 0 0 0 chr11 46022289 46022320 -75821536 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 936 213 39 0 0 chr11 46022668 46022694 -75821162 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 5 936 227 352 106 9 chr11 46022697 46022865 -75820991 - L2a LINE L2 -12 3414 3176 5 936 572 227 0 23 chr11 46024419 46024564 -75819292 + ID_B1 SINE B4 1 212 -12 5 936 632 191 100 31 chr11 46024926 46025056 -75818800 - URR1B DNA MER1_type -84 141 3 5 936 407 19 0 19 chr11 46026250 46026303 -75817553 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 936 467 329 94 39 chr11 46026303 46026559 -75817297 - B4A SINE B4 -22 270 1 5 936 211 192 19 37 chr11 46026660 46026714 -75817142 + PB1 SINE Alu 73 125 -2 5 936 305 164 36 0 chr11 46027565 46027620 -75816236 + LTR86A1 LTR ERVL 155 211 -302 5 936 487 278 115 6 chr11 46028993 46029167 -75814689 + MER20 DNA MER1_type 27 219 0 5 936 279 79 0 0 chr11 46029312 46029350 -75814506 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 936 322 221 24 61 chr11 46029503 46029585 -75814271 + B4A SINE B4 80 158 -134 6 936 388 314 156 5 chr11 46029837 46030042 -75813814 + L1ME3 LINE L1 5261 5496 -668 6 936 350 269 117 28 chr11 46030112 46030257 -75813599 - MTEb LTR MaLR -21 358 201 6 936 483 234 100 21 chr11 46030286 46030426 -75813430 - B3 SINE B2 -5 211 61 6 936 346 267 24 99 chr11 46030480 46030647 -75813209 - MTEb LTR MaLR -226 153 3 6 936 323 329 127 42 chr11 46030720 46030980 -75812876 + L1ME3 LINE L1 5859 6140 -22 6 936 304 308 9 28 chr11 46031689 46031796 -75812060 + C-rich Low_complexity Low_complexity 4 108 0 6 936 185 314 103 19 chr11 46032827 46032934 -75810922 + L2a LINE L2 3052 3167 -259 6 936 219 328 18 9 chr11 46033504 46033618 -75810238 + CT-rich Low_complexity Low_complexity 2 116 0 6 936 274 207 221 18 chr11 46033656 46033769 -75810087 + RMER10A LTR ERVL 280 415 -27 6 936 219 139 0 0 chr11 46033774 46033810 -75810046 + (CATA)n Simple_repeat Simple_repeat 2 37 0 6 936 743 269 19 6 chr11 46034022 46034183 -75809673 + B3 SINE B2 1 163 -53 6 936 198 0 0 0 chr11 46034183 46034205 -75809651 + (CG)n Simple_repeat Simple_repeat 2 23 0 7 936 315 0 0 0 chr11 46034205 46034239 -75809617 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 936 494 286 58 79 chr11 46034239 46034266 -75809590 + B2_Mm2 SINE B2 161 185 -10 7 936 445 296 92 7 chr11 46035255 46035444 -75808412 - MIRb SINE MIR -49 219 9 7 936 1290 158 13 18 chr11 46035672 46035898 -75807958 - URR1B DNA MER1_type 0 225 1 7 936 731 239 81 43 chr11 46036825 46037035 -75806821 - ID_B1 SINE B4 -5 219 2 7 936 637 225 150 31 chr11 46037179 46037372 -75806484 + B3 SINE B2 1 216 0 7 936 486 279 0 9 chr11 46038426 46038531 -75805325 + PB1D10 SINE Alu 1 104 -13 7 936 332 347 7 45 chr11 46038698 46038852 -75805004 - MIRb SINE MIR -106 162 15 7 936 225 345 77 60 chr11 46038942 46039124 -75804732 + Tigger14a DNA MER2_type 17 201 -123 7 936 523 306 63 43 chr11 46039821 46040139 -75803717 + MLT1A LTR MaLR 19 371 -3 8 936 2420 89 3 52 chr11 46040505 46040849 -75803007 + ORR1A2 LTR MaLR 1 327 0 8 936 509 227 27 18 chr11 46040988 46041100 -75802756 - B1F1 SINE Alu -6 143 31 8 936 180 97 0 0 chr11 46042588 46042619 -75801237 + (CAAAC)n Simple_repeat Simple_repeat 5 35 0 8 936 630 243 28 7 chr11 46043359 46043500 -75800356 - B1_Mur1 SINE Alu 0 149 6 8 936 430 240 99 77 chr11 46043708 46043929 -75799927 - MLT1D LTR MaLR -267 238 13 8 936 182 262 0 45 chr11 46044695 46044739 -75799117 - L3 LINE CR1 -2289 2200 2159 8 936 1120 89 19 6 chr11 46045427 46045585 -75798271 + URR1A DNA MER1_type 67 226 0 8 936 257 272 86 0 chr11 46045982 46046063 -75797793 - PB1D10 SINE Alu -7 110 23 8 936 524 215 237 0 chr11 46046001 46046136 -75797720 - ID_B1 SINE B4 -57 167 1 8 936 671 249 154 5 chr11 46046673 46046887 -75796969 - L1MA5 LINE L1 0 6300 6055 9 936 651 286 92 65 chr11 46047100 46047362 -75796494 + B4A SINE B4 24 292 0 9 936 261 0 0 0 chr11 46047390 46047419 -75796437 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 936 258 105 0 0 chr11 46047623 46047661 -75796195 + (ACTG)n Simple_repeat Simple_repeat 1 38 0 9 936 412 322 63 140 chr11 46047743 46048093 -75795763 - MLT1B LTR MaLR -9 381 59 9 936 912 244 114 29 chr11 46048424 46048669 -75795187 + B4 SINE B4 11 276 -16 9 936 288 0 0 0 chr11 46048695 46048727 -75795129 + (GA)n Simple_repeat Simple_repeat 2 33 0 9 936 259 25 0 48 chr11 46050099 46050141 -75793715 + (TAA)n Simple_repeat Simple_repeat 1 40 0 9 936 1095 139 128 5 chr11 46050310 46050498 -75793358 + URR1B DNA MER1_type 15 225 0 9 936 505 236 40 67 chr11 46052331 46052481 -75791375 - B1F1 SINE Alu -1 148 3 9 936 497 302 37 19 chr11 46053883 46054045 -75789811 - MER58B DNA MER1_type -3 338 174 1 936 566 291 69 80 chr11 46054135 46054397 -75789459 + B4A SINE B4 34 292 0 1 936 235 250 17 0 chr11 46054400 46054460 -75789396 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 936 688 281 120 89 chr11 46055102 46055527 -75788329 - RLTR18B LTR ERVK 0 616 187 1 936 217 303 26 26 chr11 46055614 46055692 -75788164 + L2b LINE L2 3285 3362 -13 1 936 1374 40 0 0 chr11 46056032 46056209 -75787647 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 936 24 0 0 0 chr11 46056561 46056585 -75787271 + AT_rich Low_complexity Low_complexity 1 24 0 1 936 216 178 0 0 chr11 46056720 46056765 -75787091 + A-rich Low_complexity Low_complexity 2 46 0 1 936 311 141 0 15 chr11 46057085 46057150 -75786706 + CT-rich Low_complexity Low_complexity 2 65 0 1 936 308 343 57 21 chr11 46058101 46058241 -75785615 + LTR84b LTR ERVL 603 747 -14 1 936 442 349 26 26 chr11 46060243 46060437 -75783419 - MIRb SINE MIR -8 260 67 1 936 336 320 24 16 chr11 46060581 46060708 -75783148 - MER45A DNA Tip100 0 178 51 1 936 929 128 232 6 chr11 46061528 46061709 -75782147 + URR1A DNA MER1_type 5 226 0 1 936 216 302 0 0 chr11 46062017 46062070 -75781786 - L2b LINE L2 -11 3364 3312 1 936 393 150 0 0 chr11 46062532 46062592 -75781264 + RLTR11A LTR ERVK 1 60 -393 1 936 879 146 43 20 chr11 46062590 46062902 -75780954 + RLTR11A LTR ERVK 174 528 0 1 936 269 245 10 0 chr11 46063751 46063853 -75780003 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 936 252 312 85 11 chr11 46064180 46064274 -75779582 - L2b LINE L2 -495 2924 2824 1 936 398 322 87 0 chr11 46064362 46064545 -75779311 + Charlie5 DNA MER1_type 2404 2602 -22 1 936 812 114 50 57 chr11 46064717 46064857 -75778999 - B1_Mur3 SINE Alu -10 139 1 1 936 405 194 14 0 chr11 46064901 46064973 -75778883 - B3A SINE B2 -125 73 1 1 936 237 335 104 66 chr11 46066983 46067165 -75776691 + MER115 DNA Tip100 40 228 -465 1 936 1160 52 0 0 chr11 46068541 46068675 -75775181 - B1_Mus1 SINE Alu -13 135 2 1 936 22 0 0 0 chr11 46068799 46068821 -75775035 + AT_rich Low_complexity Low_complexity 1 22 0 1 936 256 33 0 0 chr11 46068956 46068986 -75774870 + ORR1B2 LTR MaLR 3 32 -335 1 936 3297 213 52 51 chr11 46068986 46070490 -75773366 + Lx5 LINE L1 5383 7206 -254 1 936 863 158 47 18 chr11 46070490 46070661 -75773195 + ORR1B2 LTR MaLR 204 379 0 1 936 279 175 0 0 chr11 46070851 46070908 -75772948 + T-rich Low_complexity Low_complexity 1 57 0 1 936 180 0 0 0 chr11 46071020 46071040 -75772816 + (C)n Simple_repeat Simple_repeat 1 20 0 1 936 528 279 51 68 chr11 46071613 46071790 -75772066 + MIR3 SINE MIR 16 189 -19 1 936 233 98 24 0 chr11 46072296 46072337 -75771519 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 936 668 225 25 6 chr11 46072790 46072951 -75770905 + MIR3 SINE MIR 24 187 -21 1 936 196 352 133 0 chr11 46073795 46073900 -75769956 - MIR3 SINE MIR -48 160 42 1 936 478 219 123 7 chr11 46074005 46074143 -75769713 - MIRc SINE MIR -95 173 20 1 936 183 231 116 71 chr11 46074764 46074876 -75768980 - MIRb SINE MIR -11 257 141 1 936 792 285 60 6 chr11 46075307 46075642 -75768214 + L1MA5 LINE L1 5516 5868 -432 1 936 201 146 0 0 chr11 46075687 46075735 -75768121 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 936 471 290 28 0 chr11 46075751 46075858 -75767998 + B4 SINE B4 7 116 -176 1 936 348 205 0 60 chr11 46075911 46075994 -75767862 + B4 SINE B4 215 292 0 1 936 534 118 29 0 chr11 46076010 46076112 -75767744 + (CA)n Simple_repeat Simple_repeat 1 105 0 1 936 335 102 0 20 chr11 46076114 46076164 -75767692 + HAL1-3A_ME LINE L1 1975 2023 -835 1 936 380 318 88 13 chr11 46076215 46076454 -75767402 + L1MA5 LINE L1 6042 6298 -2 1 936 258 324 114 0 chr11 46076500 46076605 -75767251 + Charlie10a DNA MER1_type 163 279 -1 1 936 239 54 0 26 chr11 46077180 46077218 -75766638 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 936 584 281 52 12 chr11 46077385 46077558 -75766298 + B3A SINE B2 1 180 -18 1 936 508 294 53 41 chr11 46077637 46078112 -75765744 + L1MB7 LINE L1 5049 5530 -649 1 936 213 239 147 15 chr11 46078231 46078299 -75765557 + B1F1 SINE Alu 72 148 -1 1 936 414 282 62 27 chr11 46078338 46078484 -75765372 - B4A SINE B4 -140 152 2 1 936 541 241 70 112 chr11 46078505 46078545 -75765311 - Lx8 LINE L1 -2 7471 7435 1 936 2315 160 47 17 chr11 46078545 46078952 -75764904 + MTC LTR MaLR 3 421 0 1 936 541 241 70 112 chr11 46078952 46079196 -75764660 - Lx8 LINE L1 -39 7434 7199 1 936 301 302 84 14 chr11 46079543 46079758 -75764098 + L1MB7 LINE L1 5733 5962 -222 1 936 391 296 48 0 chr11 46079878 46080003 -75763853 - B3A SINE B2 -1 197 67 1 936 221 143 48 0 chr11 46080816 46080858 -75762998 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 1 936 237 353 176 0 chr11 46080962 46081081 -75762775 - MER82 DNA MER2_type -145 508 369 1 936 1192 138 108 5 chr11 46081103 46081307 -75762549 - URR1B DNA MER1_type 0 225 1 1 936 298 376 82 5 chr11 46081397 46081592 -75762264 - MER82 DNA MER2_type -436 217 8 1 936 1269 267 18 76 chr11 46081765 46082162 -75761694 + MTE2a LTR MaLR 1 374 -5 1 936 485 304 53 12 chr11 46082165 46082335 -75761521 + MER2 DNA MER2_type 160 336 -9 1 936 267 79 0 0 chr11 46082338 46082376 -75761480 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1 936 373 262 79 34 chr11 46082986 46083202 -75760654 - B4A SINE B4 -65 227 2 1 936 350 277 35 9 chr11 46083474 46083587 -75760269 - L1MA5 LINE L1 -2 6298 6183 1 936 276 262 38 0 chr11 46083615 46083695 -75760161 - L1MA5 LINE L1 -189 6111 6029 1 936 243 263 0 17 chr11 46083853 46083911 -75759945 - MIR SINE MIR -105 157 101 1 936 800 145 7 0 chr11 46084606 46084751 -75759105 + CT-rich Low_complexity Low_complexity 2 147 0 1 936 416 226 36 45 chr11 46085184 46085295 -75758561 - PB1D10 SINE Alu -7 110 1 1 936 304 253 36 26 chr11 46085288 46085384 -75758472 + B1F1 SINE Alu 3 100 -49 1 936 286 339 0 9 chr11 46086706 46086819 -75757037 + PB1D10 SINE Alu 1 112 -5 1 936 977 231 34 0 chr11 46087546 46087754 -75756102 + B3 SINE B2 2 216 0 1 936 190 265 11 98 chr11 46088511 46088603 -75755253 - MIRm SINE MIR -124 152 69 1 936 396 0 0 0 chr11 46089115 46089159 -75754697 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 936 468 231 65 0 chr11 46089527 46089635 -75754221 + PB1D7 SINE Alu 5 119 -1 1 936 720 263 24 65 chr11 46089831 46090054 -75753802 + B4 SINE B4 6 226 -66 1 936 876 240 23 11 chr11 46090054 46090231 -75753625 + B3A SINE B2 3 181 -17 1 936 720 263 24 65 chr11 46090231 46090255 -75753601 + B4 SINE B4 227 243 -49 1 936 198 208 238 17 chr11 46091229 46091304 -75752552 - MIRc SINE MIR -80 188 91 1 936 269 311 40 0 chr11 46092068 46092142 -75751714 - ID4_ SINE ID -4 79 3 1 936 262 262 39 33 chr11 46092151 46092292 -75751564 - PB1 SINE Alu -7 120 2 1 936 287 346 152 32 chr11 46092828 46093144 -75750712 + MLT1K LTR MaLR 126 479 -116 1 936 185 297 38 75 chr11 46093205 46093285 -75750571 - MIRc SINE MIR -76 192 116 1 936 348 24 0 0 chr11 46093865 46093906 -75749950 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 1 936 441 40 53 0 chr11 46093909 46093984 -75749872 + (CTATA)n Simple_repeat Simple_repeat 2 80 0 1 936 1404 226 119 19 chr11 46094553 46094932 -75748924 - MTD LTR MaLR -2 417 1 1 936 836 334 34 15 chr11 46094991 46095099 -75748757 + L1MB7 LINE L1 5710 5821 -363 1 936 321 26 0 0 chr11 46095099 46095137 -75748719 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 936 836 334 34 15 chr11 46095137 46095438 -75748418 + L1MB7 LINE L1 5822 6126 -58 1 936 342 0 0 0 chr11 46095472 46095510 -75748346 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 936 468 174 0 0 chr11 46095582 46095674 -75748182 + GA-rich Low_complexity Low_complexity 2 93 0 1 936 1171 259 94 23 chr11 46095857 46096208 -75747648 + MTEb LTR MaLR 1 376 -3 1 936 274 294 0 0 chr11 46096566 46096634 -75747222 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 936 387 236 39 0 chr11 46098255 46098356 -75745500 - B1F1 SINE Alu 0 117 12 1 936 402 74 0 0 chr11 46098588 46098642 -75745214 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 1 936 305 349 202 23 chr11 46098768 46098897 -75744959 + RSINE1 SINE B4 1 152 -13 1 936 270 0 0 0 chr11 46098912 46098942 -75744914 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 936 338 299 131 0 chr11 46099717 46099854 -75744002 + MER5A1 DNA MER1_type 6 160 -6 1 936 408 292 123 4 chr11 46099876 46100103 -75743753 + L1MB7 LINE L1 5875 6128 -56 1 936 209 131 66 0 chr11 46100719 46100780 -75743076 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1 936 709 257 13 7 chr11 46100807 46100956 -75742900 - ID_B1 SINE B4 -59 165 16 1 936 183 348 33 22 chr11 46100956 46101047 -75742809 - MIRm SINE MIR -155 121 30 1 936 889 231 18 58 chr11 46101316 46101541 -75742315 - ID_B1 SINE B4 -8 216 1 1 936 747 300 85 27 chr11 46101587 46101882 -75741974 + MLT1B LTR MaLR 60 371 -19 1 936 473 249 98 46 chr11 46102046 46102219 -75741637 + MIRc SINE MIR 19 200 -68 1 936 348 303 67 42 chr11 46102431 46102624 -75741232 + MIRb SINE MIR 26 223 -45 1 936 180 0 0 0 chr11 46103564 46103584 -75740272 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 936 632 227 8 0 chr11 46103902 46104021 -75739835 - PB1D7 SINE Alu 0 120 1 1 936 23 0 0 0 chr11 46104348 46104371 -75739485 + AT_rich Low_complexity Low_complexity 1 23 0 1 936 853 207 7 7 chr11 46105330 46105481 -75738375 + RSINE1 SINE B4 4 154 -11 1 936 516 250 28 0 chr11 46106198 46106306 -75737550 + B1F1 SINE Alu 1 111 -38 1 936 611 233 61 24 chr11 46106553 46106736 -75737120 + B3A SINE B2 1 193 -2 1 936 189 154 0 0 chr11 46107334 46107373 -75736483 + CT-rich Low_complexity Low_complexity 2 40 0 1 936 881 218 53 0 chr11 46107426 46107596 -75736260 - B3A SINE B2 -16 182 4 1 936 369 0 0 0 chr11 46107699 46107740 -75736116 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2 936 441 302 19 127 chr11 46108544 46108749 -75735107 - B4A SINE B4 -4 288 106 2 936 237 326 39 90 chr11 46108612 46108767 -75735089 - B1_Mur4 SINE Alu -1 149 3 2 936 189 0 0 0 chr11 46109018 46109039 -75734817 + (T)n Simple_repeat Simple_repeat 1 21 0 2 936 2486 30 13 7 chr11 46109053 46109353 -75734503 - L1Md_F3 LINE L1 0 6584 6283 2 936 1135 291 52 81 chr11 46109444 46109829 -75734027 + MTE2a LTR MaLR 6 379 0 2 936 2735 65 96 0 chr11 46109880 46110234 -75733622 + RLTR10 LTR ERVK 1 388 -2 2 936 323 283 141 11 chr11 46110303 46110550 -75733306 + L1MC5 LINE L1 6636 6869 -1173 2 936 1097 30 0 7 chr11 46110710 46110845 -75733011 + B1_Mus2 SINE Alu 14 147 0 2 936 186 43 0 0 chr11 46110879 46110902 -75732954 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 936 279 253 83 83 chr11 46111250 46111431 -75732425 + L1MC5 LINE L1 7174 7354 -607 2 936 316 337 116 16 chr11 46111702 46111892 -75731964 + L1MC5 LINE L1 7605 7813 -148 2 936 290 288 55 0 chr11 46111893 46111966 -75731890 + RSINE1 SINE B4 8 84 -81 2 936 453 36 0 0 chr11 46112048 46112103 -75731753 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 936 260 292 40 39 chr11 46113069 46113229 -75730627 + MIRc SINE MIR 3 159 -103 2 936 1622 47 0 0 chr11 46113257 46113450 -75730406 - B2_Mm1a SINE B2 0 193 1 2 936 351 242 52 134 chr11 46113715 46113887 -75729969 + RSINE1 SINE B4 1 158 -7 2 936 985 247 144 3 chr11 46113896 46114180 -75729676 - MTD LTR MaLR -3 416 93 2 936 296 241 101 0 chr11 46115330 46115409 -75728447 - RCHARR1 DNA MER1_type -3 971 885 2 936 961 188 17 0 chr11 46115409 46115585 -75728271 + B2_Mm1t SINE B2 1 179 -14 2 936 339 167 330 0 chr11 46115694 46115803 -75728053 + B2_Mm2 SINE B2 47 191 -4 2 936 378 361 19 25 chr11 46115984 46116146 -75727710 - B4A SINE B4 0 292 132 2 936 1138 248 91 103 chr11 46116241 46116650 -75727206 - RCHARR1 DNA MER1_type -212 762 359 2 936 1065 203 71 0 chr11 46116679 46116876 -75726980 + B3 SINE B2 1 211 -5 2 936 587 268 19 90 chr11 46116883 46117039 -75726817 + RSINE1 SINE B4 21 165 0 2 936 710 284 136 18 chr11 46117077 46117518 -75726338 + L1MB8 LINE L1 5677 6169 -9 2 936 629 288 0 48 chr11 46119155 46119323 -75724533 + B4 SINE B4 8 167 -125 2 936 378 0 0 0 chr11 46119375 46119417 -75724439 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 936 452 279 40 17 chr11 46119977 46120152 -75723704 + L1MA4 LINE L1 5760 5938 -362 2 936 2582 50 3 0 chr11 46120990 46121308 -75722548 - ORR1A2 LTR MaLR -8 319 1 2 936 961 228 49 141 chr11 46121505 46121811 -75722045 + MTEb LTR MaLR 72 349 -30 2 936 204 220 40 0 chr11 46123051 46123101 -75720755 - MIRb SINE MIR -30 238 187 2 936 558 75 0 0 chr11 46124080 46124160 -75719696 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 936 294 29 0 0 chr11 46124160 46124195 -75719661 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 936 33 56 0 0 chr11 46125801 46125855 -75718001 + GC_rich Low_complexity Low_complexity 1 54 0 2 936 288 327 65 0 chr11 46126148 46126255 -75717601 - L2a LINE L2 -2 3424 3311 2 936 628 231 0 24 chr11 46126409 46126533 -75717323 + RSINE1 SINE B4 16 136 -29 2 936 251 278 111 58 chr11 46126533 46126546 -75717310 + B2_Mm2 SINE B2 15 158 -37 2 936 246 116 0 0 chr11 46126546 46126589 -75717267 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 936 251 278 111 58 chr11 46126589 46126623 -75717233 + B2_Mm2 SINE B2 159 194 -1 2 936 468 91 0 0 chr11 46126670 46126736 -75717120 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 936 573 115 0 0 chr11 46127017 46127104 -75716752 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 936 962 182 113 10 chr11 46127109 46127303 -75716553 - B3 SINE B2 0 216 3 2 936 236 347 64 8 chr11 46128052 46128177 -75715679 + MIR3 SINE MIR 45 176 -32 2 936 309 340 44 130 chr11 46128343 46128796 -75715060 + L2c LINE L2 2969 3382 -5 2 936 252 324 68 10 chr11 46129093 46129196 -75714660 - MIRb SINE MIR -65 203 95 2 936 702 263 19 19 chr11 46129344 46129499 -75714357 + RSINE1 SINE B4 11 165 0 2 936 318 190 17 17 chr11 46129878 46129937 -75713919 + B1_Mus1 SINE Alu 2 60 -88 2 936 249 263 0 17 chr11 46129887 46129945 -75713911 + ID_B1 SINE B4 91 147 -77 2 936 265 0 0 161 chr11 46129945 46130082 -75713774 + (CAGAG)n Simple_repeat Simple_repeat 1 115 0 2 936 591 172 0 0 chr11 46130085 46130178 -75713678 + B1_Mur3 SINE Alu 42 134 -15 2 936 542 15 15 0 chr11 46130179 46130246 -75713610 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 936 466 326 72 51 chr11 46130595 46130831 -75713025 + MIRb SINE MIR 28 268 0 2 936 532 264 74 49 chr11 46131491 46131636 -75712220 + MER82 DNA MER2_type 2 148 -505 2 936 270 0 0 0 chr11 46131636 46131666 -75712190 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 936 532 264 74 49 chr11 46131666 46131723 -75712133 + MER82 DNA MER2_type 149 209 -444 2 936 638 265 72 0 chr11 46131716 46131897 -75711959 - ID_B1 SINE B4 -7 217 24 2 936 403 284 114 53 chr11 46131904 46132131 -75711725 + MER82 DNA MER2_type 194 434 -219 2 936 600 125 50 0 chr11 46132276 46132396 -75711460 + CT-rich Low_complexity Low_complexity 2 127 0 2 936 426 20 0 0 chr11 46132406 46132457 -75711399 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 936 713 286 29 43 chr11 46132776 46132984 -75710872 - MLT1A0 LTR MaLR 0 365 161 2 936 1684 166 107 24 chr11 46132999 46133327 -75710529 + MTD LTR MaLR 57 411 -8 2 936 474 285 44 50 chr11 46133314 46133495 -75710361 - MLT1A0 LTR MaLR -211 197 18 2 936 5718 105 7 30 chr11 46133741 46134594 -75709262 - Lx4A LINE L1 0 7058 6226 2 936 1275 292 89 45 chr11 46134960 46135513 -75708343 - Lx8 LINE L1 -80 7393 6817 2 936 272 205 106 24 chr11 46136763 46136848 -75707008 - MER5A1 DNA MER1_type -1 165 74 2 14 690 175 25 67 chr11 46137227 46137542 -75706314 + RMER10A LTR ERVL 44 437 -5 2 937 30 45 0 0 chr11 46137783 46137827 -75706029 + AT_rich Low_complexity Low_complexity 1 44 0 2 937 214 135 58 0 chr11 46137827 46137879 -75705977 + T-rich Low_complexity Low_complexity 1 55 0 2 937 678 161 131 0 chr11 46137879 46138009 -75705847 - B1_Mm SINE Alu 0 147 1 2 937 192 333 88 44 chr11 46139679 46139839 -75704017 + MIRb SINE MIR 18 184 -84 2 937 516 318 26 7 chr11 46141271 46141423 -75702433 + MIRb SINE MIR 55 209 -59 2 937 607 296 61 32 chr11 46141568 46141847 -75702009 + L1MC3 LINE L1 4561 4847 -1299 2 937 4630 247 32 77 chr11 46141988 46142442 -75701414 + Lx9 LINE L1 6124 6616 -1028 2 937 1006 94 12 12 chr11 46142442 46142603 -75701253 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 2 937 1127 53 0 0 chr11 46142604 46142737 -75701119 - B1_Mm SINE Alu -13 134 2 2 937 4630 250 33 28 chr11 46142737 46143617 -75700239 + Lx9 LINE L1 6617 7496 -148 2 937 246 308 127 13 chr11 46143671 46143829 -75700027 + L1MC3 LINE L1 5016 5191 -955 2 937 575 246 15 0 chr11 46143829 46143959 -75699897 + RSINE1 SINE B4 3 134 -31 2 937 944 185 74 0 chr11 46144043 46144232 -75699624 + B3 SINE B2 2 204 -12 2 937 325 241 194 8 chr11 46144251 46144474 -75699382 + L1MC3 LINE L1 5177 5436 -923 2 937 300 206 33 157 chr11 46144538 46144659 -75699197 + MT2B LTR ERVL 152 257 -344 2 937 631 186 32 56 chr11 46144554 46144679 -75699177 + B1_Mur2 SINE Alu 3 124 -25 2 937 307 124 11 34 chr11 46144811 46144880 -75698976 - B1_Mur4 SINE Alu -3 147 82 2 937 768 236 0 86 chr11 46144885 46145107 -75698749 + L1MC3 LINE L1 5634 5836 -1949 2 937 369 62 0 0 chr11 46145711 46145759 -75698097 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 937 510 172 0 0 chr11 46146618 46146717 -75697139 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 2 937 617 187 98 0 chr11 46146726 46146849 -75697007 - B1_Mus2 SINE Alu -12 135 1 2 937 310 318 73 77 chr11 46147164 46147423 -75696433 - MamRep434 DNA TcMar -97 329 72 2 937 327 65 0 0 chr11 46147580 46147626 -75696230 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 2 937 327 325 82 61 chr11 46147743 46148022 -75695834 + L2a LINE L2 3122 3406 -20 2 937 414 274 22 113 chr11 46149190 46149412 -75694444 + L1MA4 LINE L1 5736 5937 -363 2 937 303 274 126 56 chr11 46149472 46149615 -75694241 - MIRm SINE MIR -67 209 57 2 937 758 193 6 0 chr11 46150363 46150529 -75693327 + CT-rich Low_complexity Low_complexity 2 168 0 2 937 1558 186 74 22 chr11 46150616 46151030 -75692826 - Lx7 LINE L1 0 7696 7017 2 937 367 202 0 21 chr11 46151141 46151237 -75692619 + CT-rich Low_complexity Low_complexity 3 96 0 2 937 319 292 103 89 chr11 46151238 46151452 -75692404 - B4 SINE B4 -67 225 9 2 937 247 312 24 48 chr11 46152056 46152140 -75691716 - PB1D10 SINE Alu -2 115 34 2 937 430 231 37 97 chr11 46152347 46152481 -75691375 - B3A SINE B2 0 198 73 2 937 445 202 23 109 chr11 46152724 46152852 -75691004 - B3A SINE B2 -81 117 1 2 937 199 337 24 12 chr11 46152900 46152984 -75690872 + MIR3 SINE MIR 115 199 -9 2 937 267 136 0 0 chr11 46153371 46153430 -75690426 + (T)n Simple_repeat Simple_repeat 1 59 0 2 937 239 235 20 0 chr11 46153430 46153481 -75690375 + MER5A DNA MER1_type 136 187 -2 2 937 185 83 0 27 chr11 46153620 46153657 -75690199 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 937 225 321 0 13 chr11 46153657 46153736 -75690120 - ID4_ SINE ID -1 82 5 2 937 1027 259 70 34 chr11 46155049 46155470 -75688386 + L1MA4 LINE L1 5532 5970 -186 2 937 259 318 131 48 chr11 46156176 46156388 -75687468 - MIRc SINE MIR -28 240 5 2 937 693 45 0 0 chr11 46156925 46157014 -75686842 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 937 348 24 0 0 chr11 46157014 46157054 -75686802 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 937 480 279 103 60 chr11 46157093 46157326 -75686530 - L1MB5 LINE L1 -222 5952 5710 2 937 264 100 0 0 chr11 46158115 46158155 -75685701 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 937 484 277 123 73 chr11 46159168 46159347 -75684509 - B3 SINE B2 -22 194 7 3 937 1005 136 0 0 chr11 46160103 46160250 -75683606 + B1_Mus1 SINE Alu 1 147 -1 3 937 630 209 36 54 chr11 46160367 46160534 -75683322 - RSINE1 SINE B4 0 165 2 3 937 202 359 8 25 chr11 46160879 46160999 -75682857 - MIR3 SINE MIR -88 120 3 3 937 1426 282 118 8 chr11 46162902 46163395 -75680461 + MER44B DNA MER2_type 4 550 0 3 937 607 180 176 2 chr11 46164199 46164330 -75679526 - MTD LTR MaLR -64 355 190 3 937 513 0 0 0 chr11 46164331 46164388 -75679468 + (CCTG)n Simple_repeat Simple_repeat 1 57 0 3 937 798 161 11 6 chr11 46164388 46164563 -75679293 + CT-rich Low_complexity Low_complexity 3 178 0 3 937 2133 202 170 4 chr11 46164563 46165080 -75678776 - Lx9 LINE L1 -1 7643 7041 3 937 512 259 55 14 chr11 46165083 46165228 -75678628 + RSINE1 SINE B4 4 154 -11 3 937 246 230 40 13 chr11 46165254 46165329 -75678527 - L1MC4 LINE L1 -4 8038 7962 3 937 30 0 0 0 chr11 46165398 46165428 -75678428 + AT_rich Low_complexity Low_complexity 1 30 0 3 937 252 0 0 0 chr11 46165438 46165466 -75678390 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 937 459 0 0 0 chr11 46165466 46165516 -75678340 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 937 491 242 75 50 chr11 46165518 46165679 -75678177 - RSINE1 SINE B4 0 165 1 3 937 642 310 152 65 chr11 46165750 46166677 -75677179 - L1MC4 LINE L1 -273 7769 6762 3 937 568 250 30 8 chr11 46167171 46167304 -75676552 + B1_Mur1 SINE Alu 4 139 -10 3 937 264 59 0 0 chr11 46167306 46167340 -75676516 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 937 24 0 0 0 chr11 46167641 46167665 -75676191 + AT_rich Low_complexity Low_complexity 1 24 0 3 937 593 248 8 0 chr11 46167957 46168090 -75675766 + B1F SINE Alu 1 134 -15 3 937 484 192 56 28 chr11 46168627 46168734 -75675122 + B3A SINE B2 1 110 -88 3 937 21 0 0 0 chr11 46169013 46169034 -75674822 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 328 345 104 17 chr11 46170585 46170939 -75672917 + MER20B DNA MER1_type 318 702 -81 3 937 234 0 0 0 chr11 46170949 46170985 -75672871 - L1_Mus4 LINE L1 -7 6629 6594 3 937 22 0 0 0 chr11 46170988 46171010 -75672846 + AT_rich Low_complexity Low_complexity 1 22 0 3 937 587 250 11 69 chr11 46171032 46171221 -75672635 - B3A SINE B2 -16 182 5 3 937 278 307 0 11 chr11 46171231 46171320 -75672536 + MER20B DNA MER1_type 695 782 -1 3 937 339 25 0 0 chr11 46171534 46171574 -75672282 + (A)n Simple_repeat Simple_repeat 1 40 0 3 937 1162 259 34 67 chr11 46171860 46172278 -75671578 + MTD LTR MaLR 2 405 -14 3 937 342 276 77 44 chr11 46173020 46173202 -75670654 - MER5A DNA MER1_type 0 189 2 3 937 1010 172 136 0 chr11 46173458 46173656 -75670200 + URR1A DNA MER1_type 2 226 0 3 937 206 255 28 28 chr11 46174317 46174426 -75669430 + CT-rich Low_complexity Low_complexity 2 110 0 3 937 351 0 0 0 chr11 46174487 46174526 -75669330 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 937 279 0 0 0 chr11 46174526 46174556 -75669300 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 937 351 0 0 0 chr11 46174889 46174928 -75668928 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 937 223 315 76 7 chr11 46175228 46175372 -75668484 - MIRb SINE MIR -9 259 106 3 937 736 125 58 0 chr11 46176831 46176951 -75666905 + B1_Mur4 SINE Alu 3 129 -21 3 937 477 271 46 0 chr11 46176990 46177141 -75666715 - MER5A1 DNA MER1_type -1 165 8 3 937 430 301 141 15 chr11 46177813 46178012 -75665844 - ID_B1 SINE B4 0 224 1 3 937 206 121 0 0 chr11 46178090 46178123 -75665733 + (A)n Simple_repeat Simple_repeat 1 33 0 3 937 277 312 129 0 chr11 46178520 46178690 -75665166 - MIR SINE MIR -58 204 13 3 937 635 231 0 0 chr11 46178739 46178869 -75664987 + ID_B1 SINE B4 82 211 -13 3 937 234 81 0 0 chr11 46178872 46178909 -75664947 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 937 389 156 17 165 chr11 46179120 46179235 -75664621 - MER58D DNA MER1_type -3 383 286 3 937 247 312 25 0 chr11 46179236 46179316 -75664540 - MER58C DNA MER1_type -107 108 27 3 937 362 182 52 0 chr11 46180124 46180201 -75663655 + PB1D10 SINE Alu 2 82 -35 3 937 201 274 20 0 chr11 46180207 46180258 -75663598 + GA-rich Low_complexity Low_complexity 1 52 0 3 937 274 268 0 68 chr11 46180361 46180449 -75663407 + ID4_ SINE ID 2 83 0 3 937 360 389 36 0 chr11 46180762 46180901 -75662955 - RSINE1 SINE B4 -19 146 3 3 937 358 241 13 0 chr11 46181061 46181140 -75662716 + ID4_ SINE ID 3 82 -1 3 937 1187 74 0 7 chr11 46182514 46182663 -75661193 - B1_Mus1 SINE Alu 0 148 1 3 937 552 95 0 0 chr11 46183226 46183310 -75660546 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 937 781 250 117 9 chr11 46183324 46183538 -75660318 - B4A SINE B4 -49 243 7 3 937 316 38 37 19 chr11 46183579 46183633 -75660223 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 937 398 281 0 0 chr11 46184237 46184333 -75659523 + PB1D10 SINE Alu 1 96 -21 3 937 425 309 16 8 chr11 46184358 46184482 -75659374 + B1F SINE Alu 25 149 0 3 937 268 376 50 42 chr11 46184506 46184767 -75659089 + Tigger5 DNA MER2_type 79 341 -2065 3 937 362 355 47 0 chr11 46185090 46185197 -75658659 + B1F SINE Alu 1 112 -37 3 937 814 305 84 30 chr11 46185979 46186849 -75657007 + Lx8 LINE L1 5046 6004 -1469 3 937 287 170 0 0 chr11 46187740 46187787 -75656069 - B3A SINE B2 -151 47 1 3 937 21 36 0 0 chr11 46189153 46189181 -75654675 + AT_rich Low_complexity Low_complexity 1 28 0 3 937 198 192 0 0 chr11 46189233 46189285 -75654571 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 937 23 78 0 0 chr11 46189287 46189338 -75654518 + AT_rich Low_complexity Low_complexity 1 51 0 3 937 221 238 0 31 chr11 46190273 46190338 -75653518 + A-rich Low_complexity Low_complexity 4 66 0 3 937 339 292 47 0 chr11 46190373 46190479 -75653377 + PB1D10 SINE Alu 2 112 -5 3 937 324 288 159 19 chr11 46190950 46191206 -75652650 + L1MC LINE L1 5352 5644 -480 3 937 360 0 0 0 chr11 46191709 46191749 -75652107 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 937 384 308 75 0 chr11 46191757 46191864 -75651992 - RSINE1 SINE B4 -48 117 3 3 937 24 0 0 0 chr11 46192838 46192862 -75650994 + AT_rich Low_complexity Low_complexity 1 24 0 3 937 247 269 109 18 chr11 46193677 46193787 -75650069 + L2b LINE L2 3241 3360 -15 3 937 2176 301 43 24 chr11 46193816 46194755 -75649101 + Lx9 LINE L1 6491 7470 -3 3 937 455 277 47 16 chr11 46194775 46194990 -75648866 - L1M2 LINE L1 -843 5460 5237 3 937 468 129 0 0 chr11 46195562 46195632 -75648224 - B1_Mur3 SINE Alu -79 70 1 3 937 772 199 0 28 chr11 46196185 46196330 -75647526 + B1_Mur3 SINE Alu 2 142 -7 3 937 1566 26 10 31 chr11 46196340 46196536 -75647320 + B2_Mm1a SINE B2 2 193 0 3 937 313 0 85 0 chr11 46196547 46196594 -75647262 + (CAAAC)n Simple_repeat Simple_repeat 5 55 0 3 937 194 277 152 15 chr11 46197210 46197276 -75646580 - L2b LINE L2 -191 3184 3110 3 937 256 303 68 5 chr11 46197813 46197956 -75645900 + MIR SINE MIR 87 249 -19 3 937 258 363 67 0 chr11 46198452 46198587 -75645269 - MIRc SINE MIR -88 180 37 3 937 366 296 78 52 chr11 46198722 46198822 -75645034 + MER63A DNA AcHobo 1 107 -103 3 937 827 270 28 0 chr11 46198822 46199037 -75644819 - ID_B1 SINE B4 -2 222 2 3 937 366 296 78 52 chr11 46199037 46199089 -75644767 + MER63A DNA AcHobo 108 157 -53 3 937 249 33 0 0 chr11 46199388 46199418 -75644438 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 937 383 300 6 125 chr11 46199419 46199498 -75644358 - B1F SINE Alu -8 141 82 3 937 1305 20 0 0 chr11 46199498 46199645 -75644211 - B1_Mus2 SINE Alu 0 147 1 3 937 383 300 6 125 chr11 46199645 46199725 -75644131 - B1F SINE Alu -68 81 1 3 937 244 244 82 113 chr11 46199765 46199862 -75643994 + B1F1 SINE Alu 4 97 -52 3 937 550 169 16 0 chr11 46199909 46200033 -75643823 + Lx9 LINE L1 7519 7644 0 3 937 5003 183 64 46 chr11 46200758 46202023 -75641833 + RMER12 LTR ERVK 1 1809 -39 3 937 609 349 32 83 chr11 46203315 46203844 -75640012 - MLT1D LTR MaLR 0 505 4 3 937 288 170 0 0 chr11 46204496 46204549 -75639307 + G-rich Low_complexity Low_complexity 1 53 0 3 937 252 0 0 0 chr11 46204596 46204624 -75639232 + (T)n Simple_repeat Simple_repeat 1 28 0 3 937 1249 41 0 0 chr11 46204624 46204770 -75639086 - B1_Mm SINE Alu 0 147 2 3 937 329 365 64 12 chr11 46204797 46204969 -75638887 + MLT1J LTR MaLR 1 181 -331 3 937 459 318 68 45 chr11 46205046 46205267 -75638589 + MLT1J LTR MaLR 204 429 -83 3 937 372 342 100 26 chr11 46205816 46206086 -75637770 + B4A SINE B4 1 290 -2 3 937 298 250 0 64 chr11 46206907 46207001 -75636855 + L1MC5 LINE L1 7609 7696 -265 3 937 524 310 63 23 chr11 46207234 46207409 -75636447 + B3A SINE B2 1 182 -16 3 937 342 0 0 0 chr11 46207417 46207455 -75636401 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 937 586 50 20 29 chr11 46207608 46207710 -75636146 + (GGA)n Simple_repeat Simple_repeat 3 103 0 3 937 387 0 0 0 chr11 46208358 46208401 -75635455 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 937 336 249 47 165 chr11 46208591 46208803 -75635053 + L1MA4 LINE L1 5731 5917 -383 3 937 195 186 0 0 chr11 46209508 46209551 -75634305 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 937 247 226 16 0 chr11 46210686 46210748 -75633108 + RLTR19C LTR ERVK 35 97 -409 3 937 336 143 0 0 chr11 46211305 46211361 -75632495 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 937 520 275 49 18 chr11 46211534 46211697 -75632159 + B3 SINE B2 45 212 -4 4 937 393 211 20 26 chr11 46211706 46211857 -75631999 + GA-rich Low_complexity Low_complexity 2 151 0 4 937 195 42 0 0 chr11 46211922 46211946 -75631910 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 937 582 239 39 0 chr11 46211967 46212097 -75631759 - B1_Mur2 SINE Alu -6 143 9 4 937 700 225 181 0 chr11 46212109 46212291 -75631565 + B3 SINE B2 2 216 0 4 937 240 301 11 21 chr11 46213646 46213741 -75630115 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 937 38 0 0 0 chr11 46213825 46213863 -75629993 + AT_rich Low_complexity Low_complexity 1 38 0 4 937 1143 95 0 0 chr11 46213864 46214011 -75629845 - B1_Mus1 SINE Alu 0 148 2 4 937 260 302 19 0 chr11 46214022 46214128 -75629728 - L1MB8 LINE L1 0 6178 6071 4 937 280 264 0 75 chr11 46214819 46214913 -75628943 + RSINE1 SINE B4 79 165 0 4 937 238 309 55 40 chr11 46215315 46215517 -75628339 + L2a LINE L2 2939 3143 -283 4 937 402 151 0 0 chr11 46215528 46215601 -75628255 + CT-rich Low_complexity Low_complexity 3 75 0 4 937 1035 211 48 92 chr11 46215631 46215945 -75627911 - Lx7 LINE L1 0 7696 7397 4 937 181 306 169 22 chr11 46215967 46216151 -75627705 + L2a LINE L2 3186 3396 -30 4 937 230 320 38 65 chr11 46216280 46216464 -75627392 + MIR SINE MIR 84 262 0 4 937 198 0 0 0 chr11 46216492 46216514 -75627342 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 937 590 286 7 7 chr11 46216519 46216660 -75627196 - RSINE1 SINE B4 -24 141 1 4 937 189 0 0 0 chr11 46217247 46217268 -75626588 + (TGGG)n Simple_repeat Simple_repeat 3 23 0 4 937 351 136 0 0 chr11 46219045 46219104 -75624752 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 937 502 254 21 42 chr11 46219104 46219248 -75624608 - B1F SINE Alu 0 149 9 4 937 241 258 101 54 chr11 46219153 46219321 -75624535 + YREP_Mm Unknown Unknown 214 389 -1423 4 937 436 304 148 12 chr11 46219323 46219566 -75624290 - L1MA5 LINE L1 -88 6212 5937 4 937 366 61 0 0 chr11 46219603 46219652 -75624204 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 937 305 278 0 11 chr11 46220164 46220442 -75623414 + (CAG)n Simple_repeat Simple_repeat 1 274 0 4 937 183 42 0 0 chr11 46221618 46221642 -75622214 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 937 246 128 0 0 chr11 46221895 46221934 -75621922 + (CAA)n Simple_repeat Simple_repeat 2 40 0 4 937 1359 238 152 35 chr11 46221934 46222487 -75621369 + RCHARR1 DNA MER1_type 66 690 -284 4 937 1395 104 5 0 chr11 46222487 46222679 -75621177 - B2_Mm1a SINE B2 0 193 1 4 937 1359 238 152 35 chr11 46222679 46222731 -75621125 + RCHARR1 DNA MER1_type 691 742 -232 4 937 381 123 0 0 chr11 46222754 46222819 -75621037 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 937 457 296 62 7 chr11 46222819 46222965 -75620891 - B3A SINE B2 -44 154 1 4 937 251 228 108 22 chr11 46222965 46223041 -75620815 + RCHARR1 DNA MER1_type 722 809 -165 4 937 3533 152 120 17 chr11 46223114 46223209 -75620647 - RMER1B Other Other -9 1057 956 4 937 216 0 0 0 chr11 46223209 46223233 -75620623 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 937 3533 161 125 16 chr11 46223233 46223876 -75619980 - RMER1B Other Other -111 955 178 4 937 359 227 20 49 chr11 46223854 46223956 -75619900 - RMER1B Other Other -680 386 288 4 937 258 145 312 13 chr11 46223982 46224059 -75619797 - RMER1B Other Other -963 103 4 4 937 574 244 85 30 chr11 46224239 46224438 -75619418 - Lx8 LINE L1 0 7473 7264 4 937 771 127 2 13 chr11 46224442 46224572 -75619284 - ORR1D1 LTR MaLR -254 120 1 4 937 1177 284 83 2 chr11 46224652 46225051 -75618805 - Lx8 LINE L1 -246 7227 6797 4 937 3011 66 24 7 chr11 46225053 46225465 -75618391 - BGLII LTR ERVK -2 419 1 4 937 835 210 35 39 chr11 46225466 46225724 -75618132 - MYSERV16_I-int LTR ERVK -1 2841 2585 4 937 629 131 16 10 chr11 46225725 46225870 -75617986 - RLTR10 LTR ERVK -23 413 227 4 937 243 82 0 39 chr11 46225874 46225925 -75617931 - RLTR10 LTR ERVK -83 307 259 4 937 2266 54 3 6 chr11 46225931 46226246 -75617610 - RLTR10 LTR ERVK -76 314 1 4 937 17012 28 8 0 chr11 46226246 46228187 -75615669 - RLTR10-int LTR ERVK -1 1986 1 4 937 629 131 16 10 chr11 46228188 46228333 -75615523 - RLTR10 LTR ERVK -23 413 227 4 937 243 82 0 39 chr11 46228337 46228388 -75615468 - RLTR10 LTR ERVK -83 307 259 4 937 2266 54 3 6 chr11 46228394 46228709 -75615147 - RLTR10 LTR ERVK -76 314 1 4 937 2329 197 92 67 chr11 46228719 46228922 -75614934 - MYSERV16_I-int LTR ERVK -293 2033 1819 4 937 4214 50 4 4 chr11 46228922 46229425 -75614431 - RLTR1C LTR ERV1 0 503 1 4 937 2329 197 92 67 chr11 46229425 46229583 -75614273 - MYSERV16_I-int LTR ERVK -508 1818 1663 4 937 1232 28 7 0 chr11 46229583 46229727 -75614129 + B1_Mus2 SINE Alu 3 147 0 4 937 2329 197 92 67 chr11 46229727 46230083 -75613773 - MYSERV16_I-int LTR ERVK -664 1662 1297 4 937 701 161 45 51 chr11 46230073 46230230 -75613626 - RMER3D-int LTR ERVK -1146 1696 1541 4 937 2100 154 110 16 chr11 46230270 46230763 -75613093 - RMER3D-int LTR ERVK -1309 1533 1014 4 937 728 11 33 0 chr11 46230799 46230890 -75612966 + (TCCCC)n Simple_repeat Simple_repeat 4 97 0 4 937 538 295 6 73 chr11 46230915 46231094 -75612762 - ORR1D2 LTR MaLR -167 203 37 4 937 236 280 0 0 chr11 46231154 46231229 -75612627 + RCHARR1 DNA MER1_type 859 933 -41 4 937 1175 58 0 0 chr11 46231229 46231368 -75612488 + B1_Mus2 SINE Alu 1 139 -8 4 937 1918 185 22 46 chr11 46231487 46231940 -75611916 - RMER10A LTR ERVL 0 442 1 4 937 939 248 175 0 chr11 46232010 46232256 -75611600 - B4A SINE B4 -2 290 2 4 937 411 276 112 0 chr11 46232256 46232408 -75611448 + MER58A DNA MER1_type 56 224 0 4 937 391 335 70 57 chr11 46232446 46232731 -75611125 + L1ME3B LINE L1 5643 5914 -326 4 937 967 250 10 0 chr11 46232731 46232935 -75610921 + B3 SINE B2 1 206 -10 4 937 391 335 70 57 chr11 46232935 46233089 -75610767 + L1ME3B LINE L1 5915 6087 -153 4 937 274 74 53 53 chr11 46233118 46233175 -75610681 + B1_Mm SINE Alu 91 147 0 4 937 24 0 0 0 chr11 46233266 46233290 -75610566 + AT_rich Low_complexity Low_complexity 1 24 0 4 937 640 227 80 0 chr11 46233686 46233849 -75610007 + B3 SINE B2 1 176 -40 4 937 840 172 20 0 chr11 46233861 46234012 -75609844 + URR1B DNA MER1_type 1 154 -71 4 937 225 0 0 0 chr11 46234131 46234156 -75609700 + (A)n Simple_repeat Simple_repeat 1 25 0 4 937 367 341 37 7 chr11 46234963 46235099 -75608757 - B1F SINE Alu -4 145 6 4 937 1177 249 87 44 chr11 46235327 46235831 -75608025 + L1MD1 LINE L1 2388 2913 -3233 4 937 239 300 67 45 chr11 46235916 46236185 -75607671 + L1MD1 LINE L1 2904 3178 -2968 4 937 4472 63 25 27 chr11 46236289 46236877 -75606979 - LTRIS_Mus LTR ERV1 0 587 1 4 937 228 162 0 0 chr11 46236918 46236955 -75606901 + PB1D7 SINE Alu 20 56 -64 4 937 265 259 74 0 chr11 46236997 46237078 -75606778 + L1MD1 LINE L1 3609 3695 -2451 4 937 256 357 36 0 chr11 46237080 46237192 -75606664 + PB1D10 SINE Alu 2 117 0 4 937 1078 214 5 5 chr11 46237194 46237410 -75606446 + B3 SINE B2 1 216 0 4 937 1097 266 185 6 chr11 46237464 46237993 -75605863 + L1MD1 LINE L1 3685 4308 -1838 4 937 419 271 118 70 chr11 46237985 46238314 -75605542 + L1MD1 LINE L1 4429 4773 -1373 4 937 361 279 71 65 chr11 46238435 46238757 -75605099 + L1MD1 LINE L1 4733 5056 -1090 4 937 397 254 37 37 chr11 46238772 46238960 -75604896 + L1MD1 LINE L1 5116 5303 -843 4 937 414 247 132 44 chr11 46238965 46239147 -75604709 + B3A SINE B2 1 198 0 4 937 1303 245 127 39 chr11 46239161 46239806 -75604050 + L1MD1 LINE L1 5299 6000 -242 4 937 275 279 150 36 chr11 46239877 46240070 -75603786 + L1MD1 LINE L1 5999 6213 -29 4 937 313 179 0 0 chr11 46240092 46240148 -75603708 + L1MC4 LINE L1 4613 4668 -1478 4 937 8220 54 9 1 chr11 46240148 46241167 -75602689 - L1_Mus3 LINE L1 -3 6635 5609 4 937 2918 153 80 40 chr11 46241177 46242127 -75601729 - RLTR13D1 LTR ERVK -32 991 10 4 937 3019 117 5 2 chr11 46242153 46242591 -75601265 - L1_Mm LINE L1 -269 5614 5176 4 937 281 293 173 23 chr11 46242593 46242813 -75601043 + L1MC4 LINE L1 4659 4911 -1235 4 937 523 243 77 46 chr11 46242899 46243093 -75600763 + L1MC4 LINE L1 5099 5298 -848 4 937 256 315 0 14 chr11 46243097 46243171 -75600685 + RSINE1 SINE B4 8 80 -85 4 937 540 310 184 16 chr11 46243177 46243682 -75600174 + L1MC4 LINE L1 5369 5958 -2084 4 937 833 141 4 7 chr11 46243682 46243852 -75600004 + B2_Mm2 SINE B2 1 168 -25 4 937 366 189 22 28 chr11 46245100 46245280 -75598576 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 937 1138 161 43 28 chr11 46245691 46245902 -75597954 + B3 SINE B2 3 216 0 4 937 250 298 78 17 chr11 46245905 46246021 -75597835 + L1MC LINE L1 5120 5242 -904 4 937 840 327 64 24 chr11 46247166 46247542 -75596314 + Tigger7 DNA MER2_type 4 394 -2097 4 937 694 203 81 0 chr11 46247565 46247762 -75596094 + Tigger7 DNA MER2_type 2257 2469 -22 4 937 324 348 36 7 chr11 46247796 46247935 -75595921 - L2a LINE L2 -4 3422 3280 4 937 373 280 152 21 chr11 46247995 46248232 -75595624 - L2a LINE L2 -481 2938 2671 4 937 332 250 70 80 chr11 46248767 46248867 -75594989 - ID_B1 SINE B4 -21 203 105 4 937 1746 191 13 24 chr11 46249073 46249454 -75594402 + MT2A LTR ERVL 126 502 -31 4 937 206 143 29 0 chr11 46249745 46249780 -75594076 + CT-rich Low_complexity Low_complexity 5 40 0 4 937 252 274 141 12 chr11 46249809 46249894 -75593962 + B1F SINE Alu 2 97 -52 4 937 21 36 0 0 chr11 46249911 46249939 -75593917 + AT_rich Low_complexity Low_complexity 1 28 0 4 937 1237 55 0 0 chr11 46251757 46251903 -75591953 - B1_Mus1 SINE Alu -1 147 2 4 937 24 0 0 0 chr11 46252307 46252331 -75591525 + AT_rich Low_complexity Low_complexity 1 24 0 4 937 212 313 84 0 chr11 46252371 46252454 -75591402 - PB1D10 SINE Alu -20 97 8 4 937 213 220 20 0 chr11 46253536 46253586 -75590270 + C-rich Low_complexity Low_complexity 2 52 0 4 937 269 239 145 73 chr11 46255498 46255648 -75588208 - MIRm SINE MIR -82 194 29 4 937 259 252 130 32 chr11 46256070 46256193 -75587663 - MER58B DNA MER1_type -47 294 160 4 937 419 231 111 0 chr11 46256560 46256668 -75587188 - B1F1 SINE Alu -29 120 1 4 937 244 152 67 17 chr11 46257600 46257660 -75586196 + Lx2B LINE L1 6938 7000 0 4 937 302 215 194 57 chr11 46257859 46258106 -75585750 + L1M5 LINE L1 3737 4017 -2129 4 937 407 319 60 42 chr11 46258468 46258753 -75585103 + L1M5 LINE L1 4543 4832 -1314 4 937 1156 68 0 0 chr11 46258938 46259084 -75584772 + B1_Mus2 SINE Alu 1 146 -1 4 937 391 318 23 0 chr11 46259113 46259245 -75584611 + RSINE1 SINE B4 8 142 -23 4 937 416 243 135 0 chr11 46259448 46259559 -75584297 + B3 SINE B2 1 126 -90 4 937 312 264 144 42 chr11 46259561 46259728 -75584128 + L1M5 LINE L1 5187 5370 -776 4 937 297 294 92 0 chr11 46259881 46259990 -75583866 - PB1D7 SINE Alu 0 120 2 4 937 197 83 28 0 chr11 46260322 46260358 -75583498 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 937 270 326 0 34 chr11 46260466 46260555 -75583301 - ID SINE ID -137 87 2 4 937 542 246 31 8 chr11 46260644 46260771 -75583085 - MTEa LTR MaLR -147 232 103 4 937 803 239 172 20 chr11 46260781 46261135 -75582721 - L1M2 LINE L1 -549 5751 5344 4 937 704 82 36 0 chr11 46261135 46261245 -75582611 - B2_Mm2 SINE B2 -5 190 77 4 937 614 293 0 0 chr11 46261264 46261404 -75582452 - B1F SINE Alu -9 140 1 4 937 459 0 0 0 chr11 46261591 46261642 -75582214 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 937 310 263 61 9 chr11 46261646 46261761 -75582095 + L1MC5 LINE L1 7305 7425 -536 4 937 376 308 25 8 chr11 46262152 46262273 -75581583 + RSINE1 SINE B4 8 130 -35 4 937 311 292 0 11 chr11 46262310 46262400 -75581456 + CT-rich Low_complexity Low_complexity 1 89 0 5 937 205 88 29 0 chr11 46262556 46262590 -75581266 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 937 213 178 0 0 chr11 46264675 46264720 -75579136 + (CTG)n Simple_repeat Simple_repeat 2 46 0 5 937 1020 98 0 0 chr11 46265379 46265552 -75578304 + (GA)n Simple_repeat Simple_repeat 1 173 0 5 937 2093 132 34 6 chr11 46265555 46265906 -75577950 + MTC LTR MaLR 61 421 0 5 937 530 168 46 18 chr11 46265913 46266022 -75577834 + RSINE1 SINE B4 11 122 -43 5 937 554 276 0 32 chr11 46266443 46266600 -75577256 + ID_B1 SINE B4 69 220 -4 5 937 370 234 0 21 chr11 46267533 46267629 -75576227 - PB1D10 SINE Alu -15 102 9 5 937 642 250 0 0 chr11 46267828 46267964 -75575892 - B1_Mus2 SINE Alu -5 142 7 5 937 186 309 0 0 chr11 46267982 46268037 -75575819 + MIRm SINE MIR 211 265 -11 5 938 287 178 258 32 chr11 46268599 46268692 -75575164 + L1M5 LINE L1 5666 5779 -345 5 938 269 120 40 0 chr11 46269045 46269095 -75574761 + GA-rich Low_complexity Low_complexity 4 55 0 5 938 199 315 14 0 chr11 46269288 46269361 -75574495 + MER5A DNA MER1_type 42 115 -74 5 938 263 271 82 0 chr11 46269368 46269453 -75574403 - B1F SINE Alu -55 94 3 5 938 443 281 66 0 chr11 46269465 46269586 -75574270 - B1F2 SINE Alu -6 143 15 5 938 21 71 0 0 chr11 46270377 46270419 -75573437 + AT_rich Low_complexity Low_complexity 1 42 0 5 938 950 294 75 7 chr11 46270596 46270874 -75572982 - Lx7 LINE L1 -411 7285 6989 5 938 874 238 35 47 chr11 46270874 46271218 -75572638 + RLTR15 LTR ERVK 1 340 -19 5 938 3016 121 17 17 chr11 46271257 46271718 -75572138 - RMER6B LTR ERVK 0 461 1 5 938 185 329 41 0 chr11 46271970 46272043 -75571813 + MIRb SINE MIR 26 101 -167 5 938 675 233 0 0 chr11 46272361 46272490 -75571366 + RSINE1 SINE B4 9 137 -28 5 938 1213 61 0 0 chr11 46272723 46272870 -75570986 - B1_Mus2 SINE Alu 0 147 1 5 938 204 347 41 0 chr11 46272945 46273043 -75570813 + MIR SINE MIR 48 149 -59 5 938 288 0 0 0 chr11 46273267 46273299 -75570557 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 938 296 353 58 13 chr11 46273302 46273457 -75570399 - RSINE1 SINE B4 -1 164 3 5 938 245 308 154 0 chr11 46274097 46274214 -75569642 + RSINE1 SINE B4 3 137 -28 5 938 988 149 0 0 chr11 46274483 46274631 -75569225 + B1_Mur2 SINE Alu 2 149 0 5 938 818 226 70 24 chr11 46274869 46275082 -75568774 + ID_B1 SINE B4 2 224 0 5 938 23 0 0 0 chr11 46275794 46275817 -75568039 + AT_rich Low_complexity Low_complexity 1 23 0 5 938 238 272 140 0 chr11 46275966 46276080 -75567776 - L1M2 LINE L1 -1126 5017 4888 5 938 387 230 160 60 chr11 46276274 46276542 -75567314 - L1M2 LINE L1 -1453 4690 4396 5 938 952 264 0 5 chr11 46276555 46276772 -75567084 - B3 SINE B2 0 216 1 5 938 699 238 0 7 chr11 46276780 46276924 -75566932 - B1_Mur2 SINE Alu -1 148 6 5 938 395 309 0 73 chr11 46276924 46276944 -75566912 - ID_B1 SINE B4 -2 222 71 5 938 1159 280 64 72 chr11 46276944 46277341 -75566515 - L1M2 LINE L1 -1751 4392 3994 5 938 530 272 143 25 chr11 46277341 46277537 -75566319 - ID_B1 SINE B4 -5 219 1 5 938 1159 280 64 72 chr11 46277537 46277670 -75566186 - L1M2 LINE L1 -2150 3993 3866 5 938 251 244 89 9 chr11 46278170 46278298 -75565558 - L1_Mur3 LINE L1 -1999 3848 3714 5 938 1373 281 91 43 chr11 46278390 46279218 -75564638 - L1M2 LINE L1 -2389 3754 2888 5 938 1132 170 191 97 chr11 46279845 46280249 -75563607 - RMER10A LTR ERVL 0 442 1 5 938 573 213 0 0 chr11 46280732 46280840 -75563016 - ID_B1 SINE B4 -8 216 109 5 938 459 0 0 0 chr11 46280926 46280977 -75562879 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 938 1258 28 0 0 chr11 46280978 46281121 -75562735 - B1_Mus2 SINE Alu -4 143 1 5 938 464 281 32 32 chr11 46281207 46281365 -75562491 + RSINE1 SINE B4 8 165 0 5 938 592 281 39 0 chr11 46281662 46281840 -75562016 - Lx8 LINE L1 -2 7471 7287 5 938 592 241 0 0 chr11 46281841 46281957 -75561899 - PB1D10 SINE Alu -1 116 1 5 938 1179 103 57 0 chr11 46282393 46282568 -75561288 - B2_Mm1a SINE B2 -6 187 3 5 938 1256 41 0 0 chr11 46282594 46282741 -75561115 - B1_Mm SINE Alu 0 147 1 5 938 672 150 75 0 chr11 46283148 46283268 -75560588 + B3 SINE B2 2 130 -86 5 938 279 0 0 0 chr11 46283304 46283335 -75560521 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 5 938 202 318 116 53 chr11 46283453 46283642 -75560214 - MIR SINE MIR -2 260 60 5 938 451 317 0 52 chr11 46283716 46283869 -75559987 + RSINE1 SINE B4 3 147 -18 5 938 450 96 0 0 chr11 46283875 46283948 -75559908 + (TCCTG)n Simple_repeat Simple_repeat 2 74 0 5 938 287 338 0 0 chr11 46283948 46284028 -75559828 + C-rich Low_complexity Low_complexity 5 84 0 5 938 325 217 157 0 chr11 46284263 46284346 -75559510 + ID_B1 SINE B4 25 120 -104 5 938 1068 92 12 0 chr11 46284356 46284520 -75559336 + URR1A DNA MER1_type 61 226 0 5 938 374 267 0 0 chr11 46284520 46284615 -75559241 + ID_B1 SINE B4 118 212 -12 5 938 688 154 15 7 chr11 46285504 46285641 -75558215 + CT-rich Low_complexity Low_complexity 3 140 0 5 938 4886 175 29 28 chr11 46285710 46286603 -75557253 - Lx5 LINE L1 0 7050 6157 5 938 198 0 0 0 chr11 46287709 46287731 -75556125 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 5 938 189 351 86 17 chr11 46288120 46288236 -75555620 + L2b LINE L2 3246 3369 -6 5 938 4109 178 167 18 chr11 46288357 46289317 -75554539 - RLTR25A LTR ERVK 0 1103 1 5 938 282 336 49 28 chr11 46289775 46289919 -75553937 + MER5B DNA MER1_type 7 153 -25 5 938 687 35 0 0 chr11 46289941 46290027 -75553829 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 938 213 152 21 21 chr11 46290401 46290448 -75553408 + CT-rich Low_complexity Low_complexity 2 48 0 5 938 22 56 0 0 chr11 46290906 46290942 -75552914 + AT_rich Low_complexity Low_complexity 1 36 0 5 938 180 0 0 0 chr11 46291636 46291656 -75552200 + (T)n Simple_repeat Simple_repeat 1 20 0 5 938 310 149 97 40 chr11 46291880 46291972 -75551884 - MIRb SINE MIR -60 208 106 5 938 257 192 12 49 chr11 46292243 46292325 -75551531 + (CAAA)n Simple_repeat Simple_repeat 1 79 0 5 938 350 278 20 10 chr11 46293418 46293516 -75550340 + PB1D10 SINE Alu 11 109 -8 5 938 837 306 17 21 chr11 46293548 46293835 -75550021 + B4 SINE B4 1 286 -6 5 938 504 0 0 0 chr11 46293843 46293899 -75549957 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 938 254 291 26 52 chr11 46293987 46294103 -75549753 + PB1D10 SINE Alu 5 117 0 5 938 379 257 10 0 chr11 46294893 46294994 -75548862 + MTE2b LTR MaLR 17 118 -261 5 938 265 233 126 11 chr11 46294947 46295034 -75548822 + MT2A LTR ERVL 72 168 -365 5 938 269 310 39 60 chr11 46295208 46295390 -75548466 + B4A SINE B4 1 178 -114 5 938 539 246 16 23 chr11 46295417 46295546 -75548310 + MTE2b LTR MaLR 1 128 -251 5 938 349 202 72 31 chr11 46295724 46295821 -75548035 + RSINE1 SINE B4 56 156 -9 5 938 1140 88 0 0 chr11 46295873 46296020 -75547836 + B1_Mus2 SINE Alu 1 147 0 5 938 252 59 0 0 chr11 46296091 46296125 -75547731 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 5 938 215 345 106 0 chr11 46296156 46296269 -75547587 + B4A SINE B4 3 127 -165 5 938 198 224 0 0 chr11 46296269 46296318 -75547538 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 938 286 336 13 39 chr11 46296330 46296485 -75547371 + B4A SINE B4 142 292 0 5 938 2075 136 84 6 chr11 46296516 46296872 -75546984 + ORR1B1 LTR MaLR 3 386 -8 5 938 794 294 110 81 chr11 46297093 46297737 -75546119 - RMER13A LTR ERVK -100 760 98 5 938 486 70 0 0 chr11 46297875 46297946 -75545910 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 938 23 33 0 0 chr11 46298395 46298425 -75545431 + AT_rich Low_complexity Low_complexity 1 30 0 5 938 323 315 99 8 chr11 46298429 46298560 -75545296 + ID_B1 SINE B4 80 222 -2 5 938 1358 238 158 38 chr11 46298856 46299362 -75544494 + RMER2 LTR ERV1 1 567 0 5 938 218 319 38 81 chr11 46299368 46299603 -75544253 + B4A SINE B4 68 292 0 5 938 180 0 0 0 chr11 46299614 46299634 -75544222 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 938 355 303 28 61 chr11 46299649 46299670 -75544186 - MER33 DNA MER1_type -75 249 232 5 938 4681 39 48 0 chr11 46299670 46300230 -75543626 - LTRIS_Mus LTR ERV1 0 587 1 5 938 355 303 28 61 chr11 46300230 46300422 -75543434 - MER33 DNA MER1_type -93 231 43 5 938 522 231 115 90 chr11 46300424 46300606 -75543250 - RLTR11A2 LTR ERVK -33 408 215 5 938 1167 22 0 0 chr11 46300606 46300744 -75543112 + (TC)n Simple_repeat Simple_repeat 2 139 0 5 938 522 229 107 63 chr11 46300744 46300955 -75542901 - RLTR11A2 LTR ERVK -304 223 6 5 938 447 219 206 11 chr11 46301363 46301543 -75542313 - ID_B1 SINE B4 -9 215 1 5 938 620 275 48 14 chr11 46302720 46302930 -75540926 + ID_B1 SINE B4 3 219 -5 5 938 325 202 132 44 chr11 46303388 46303490 -75540366 - B1_Mur1 SINE Alu -21 128 16 5 938 1143 36 0 41 chr11 46303490 46303635 -75540221 + B1_Mm SINE Alu 2 140 -7 5 938 325 202 132 44 chr11 46303635 46303646 -75540210 - B1_Mur1 SINE Alu -134 15 5 5 938 183 321 74 0 chr11 46303866 46303947 -75539909 + MIR3 SINE MIR 110 196 -12 5 938 408 136 0 0 chr11 46305169 46305257 -75538599 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 938 221 183 17 0 chr11 46305918 46305978 -75537878 + GA-rich Low_complexity Low_complexity 2 62 0 5 938 308 53 0 0 chr11 46306190 46306228 -75537628 + L1_Mus1 LINE L1 6396 6433 -134 5 938 22235 3 0 0 chr11 46306229 46309363 -75534493 - L1Md_A LINE L1 0 6582 3449 5 938 4285 32 2 0 chr11 46309363 46309855 -75534001 - MT2_Mm LTR ERVL 0 493 1 5 938 321 0 0 0 chr11 46309855 46309893 -75533963 - MERVL-int LTR ERVL 0 5485 5448 5 938 362 167 46 35 chr11 46309893 46309980 -75533876 - ORR1A3-int LTR MaLR -1323 640 553 5 938 12871 27 1 0 chr11 46309980 46311427 -75532429 - MERVL-int LTR ERVL -125 5360 3913 5 938 22444 10 13 0 chr11 46311418 46313885 -75529971 - MERVL-int LTR ERVL -2981 2504 5 5 938 4285 32 2 0 chr11 46313889 46314381 -75529475 - MT2_Mm LTR ERVL 0 493 1 5 938 19925 10 0 2 chr11 46314381 46318452 -75525404 - L1Md_A LINE L1 -2425 3458 1 6 938 1217 41 0 0 chr11 46318455 46318602 -75525254 + L1_Mus1 LINE L1 6421 6567 0 6 938 220 19 94 19 chr11 46319038 46319091 -75524765 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 6 938 683 134 20 140 chr11 46319164 46319364 -75524492 - Lx LINE L1 0 6654 6479 6 938 251 284 147 0 chr11 46319366 46319482 -75524374 - ID_B1 SINE B4 -13 211 79 6 938 411 265 10 0 chr11 46320272 46320374 -75523482 - B1_Mur2 SINE Alu -46 103 1 6 938 588 91 0 0 chr11 46321117 46321205 -75522651 + (CA)n Simple_repeat Simple_repeat 1 88 0 6 938 435 138 72 0 chr11 46322005 46322100 -75521756 - ORR1A3 LTR MaLR -225 102 1 6 938 265 244 96 12 chr11 46322149 46322232 -75521624 - L1ME2 LINE L1 -41 6123 6034 6 938 437 320 0 0 chr11 46323270 46323392 -75520464 - ID_B1 SINE B4 -6 218 97 6 938 225 302 25 19 chr11 46323457 46323563 -75520293 + B2_Mm2 SINE B2 1 111 -87 6 938 278 294 47 0 chr11 46324149 46324234 -75519622 + B1F1 SINE Alu 1 89 -60 6 938 341 149 0 15 chr11 46324856 46324924 -75518932 + CT-rich Low_complexity Low_complexity 3 69 0 6 938 206 62 31 0 chr11 46326286 46326318 -75517538 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 6 938 37 0 0 0 chr11 46326331 46326368 -75517488 + AT_rich Low_complexity Low_complexity 1 37 0 6 938 9347 51 1 2 chr11 46326398 46328237 -75515619 - L1Md_F2 LINE L1 0 6582 4745 6 938 4258 57 24 0 chr11 46328227 46328769 -75515087 + L1Md_F2 LINE L1 4189 4743 -1140 6 938 486 0 0 0 chr11 46328770 46328824 -75515032 + (TTTTC)n Simple_repeat Simple_repeat 1 54 0 6 938 1582 34 0 0 chr11 46328824 46329002 -75514854 - B2_Mm1a SINE B2 -14 179 2 6 938 25 0 0 0 chr11 46329046 46329071 -75514785 + AT_rich Low_complexity Low_complexity 1 25 0 6 938 1065 134 0 0 chr11 46329114 46329286 -75514570 + (TTC)n Simple_repeat Simple_repeat 3 174 0 6 938 387 0 0 0 chr11 46329286 46329329 -75514527 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 938 285 51 0 0 chr11 46329675 46329714 -75514142 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 6 938 387 157 0 0 chr11 46329851 46329921 -75513935 + (TGG)n Simple_repeat Simple_repeat 2 71 0 6 938 261 0 0 0 chr11 46329918 46329947 -75513909 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 938 408 263 16 85 chr11 46329947 46330076 -75513780 - RSINE1 SINE B4 0 165 46 6 938 1357 0 25 0 chr11 46330432 46330706 -75513150 + (TCTA)n Simple_repeat Simple_repeat 1 280 0 6 938 276 342 13 33 chr11 46331357 46331381 -75512475 + ID_B1 SINE B4 75 222 -2 6 938 342 246 71 39 chr11 46331381 46331508 -75512348 + B1F SINE Alu 18 148 -1 6 938 299 227 15 0 chr11 46331515 46331581 -75512275 + PB1D7 SINE Alu 5 71 -49 6 938 246 330 0 0 chr11 46332255 46332343 -75511513 - L1M5 LINE L1 -345 5779 5692 6 938 309 328 0 79 chr11 46333057 46333183 -75510673 + PB1D10 SINE Alu 1 116 -1 6 938 1137 58 7 0 chr11 46333239 46333377 -75510479 + B1_Mus1 SINE Alu 1 139 -9 6 938 297 330 110 0 chr11 46333420 46333538 -75510318 + ID_B1 SINE B4 85 215 -9 6 938 329 329 52 105 chr11 46333763 46334069 -75509787 + B4A SINE B4 2 291 -1 6 938 480 327 61 9 chr11 46334119 46334332 -75509524 - MER33 DNA MER1_type -76 248 25 6 938 22 35 0 0 chr11 46334640 46334669 -75509187 + AT_rich Low_complexity Low_complexity 1 29 0 6 938 517 230 148 11 chr11 46334761 46334950 -75508906 - ID_B1 SINE B4 -9 215 1 6 938 333 287 153 56 chr11 46335336 46335480 -75508376 + B3 SINE B2 8 165 -51 6 938 203 88 0 29 chr11 46335480 46335515 -75508341 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 938 27 0 0 0 chr11 46336082 46336109 -75507747 + AT_rich Low_complexity Low_complexity 1 27 0 6 938 252 248 0 0 chr11 46336109 46336242 -75507614 + (TA)n Simple_repeat Simple_repeat 1 133 0 6 938 474 18 0 0 chr11 46336263 46336318 -75507538 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 938 494 306 58 0 chr11 46336332 46336505 -75507351 + ID_B1 SINE B4 3 185 -39 6 938 734 188 0 0 chr11 46336945 46337073 -75506783 + B3 SINE B2 1 128 -88 6 938 1208 47 0 0 chr11 46338000 46338148 -75505708 + B1_Mus1 SINE Alu 1 148 0 6 938 361 66 16 16 chr11 46339039 46339101 -75504755 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 938 283 344 8 24 chr11 46339123 46339248 -75504608 - B3A SINE B2 -73 125 3 6 938 24 0 0 0 chr11 46340138 46340162 -75503694 + AT_rich Low_complexity Low_complexity 1 24 0 6 938 437 344 8 0 chr11 46340162 46340293 -75503563 - ID_B1 SINE B4 -10 214 83 6 938 688 175 20 65 chr11 46340938 46341079 -75502777 + B1_Mur1 SINE Alu 1 136 -13 6 938 200 35 35 0 chr11 46341079 46341108 -75502748 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 6 938 688 175 20 65 chr11 46341108 46341119 -75502737 + B1_Mur1 SINE Alu 137 146 -3 6 938 21 36 0 0 chr11 46341413 46341441 -75502415 + AT_rich Low_complexity Low_complexity 1 28 0 6 938 357 241 27 18 chr11 46341442 46341552 -75502304 + PB1D10 SINE Alu 1 111 -6 6 938 515 252 58 22 chr11 46341560 46341698 -75502158 + B1_Mur1 SINE Alu 2 144 -5 6 938 218 248 243 18 chr11 46342377 46342488 -75501368 - ID_B1 SINE B4 -5 219 84 6 938 743 185 82 0 chr11 46342741 46342876 -75500980 - B1_Mur3 SINE Alu -1 148 3 6 938 414 121 0 0 chr11 46343374 46343440 -75500416 + (TTTA)n Simple_repeat Simple_repeat 3 68 0 6 938 382 283 70 8 chr11 46343442 46343570 -75500286 - B1_Mur1 SINE Alu -6 143 8 6 938 492 286 7 14 chr11 46344174 46344316 -75499540 + RSINE1 SINE B4 3 143 -22 6 938 189 74 0 0 chr11 46344331 46344358 -75499498 + (G)n Simple_repeat Simple_repeat 1 27 0 6 938 22 0 0 0 chr11 46344383 46344405 -75499451 + AT_rich Low_complexity Low_complexity 1 22 0 6 938 303 28 0 0 chr11 46346308 46346344 -75497512 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 938 367 125 28 0 chr11 46346346 46346418 -75497438 + GA-rich Low_complexity Low_complexity 3 76 0 6 938 355 265 118 29 chr11 46346815 46346951 -75496905 + B1F SINE Alu 2 149 0 6 938 454 316 14 0 chr11 46347429 46347568 -75496288 - ID_B1 SINE B4 0 224 84 6 938 510 202 57 0 chr11 46347718 46347842 -75496014 + ID_B1 SINE B4 86 216 -8 6 938 479 250 25 0 chr11 46348276 46348396 -75495460 + B1_Mur1 SINE Alu 3 125 -24 6 938 530 212 53 0 chr11 46348757 46348889 -75494967 - B1_Mur2 SINE Alu 0 149 11 6 938 243 333 0 0 chr11 46350005 46350068 -75493788 + polypyrimidine Low_complexity Low_complexity 4 66 0 6 938 299 310 16 41 chr11 46350826 46350947 -75492909 - RSINE1 SINE B4 -2 163 46 6 938 314 204 11 0 chr11 46351804 46351892 -75491964 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 938 182 246 79 92 chr11 46352980 46353056 -75490800 + MER5B DNA MER1_type 96 170 -8 6 938 377 314 73 0 chr11 46353782 46353906 -75489950 + B1F2 SINE Alu 11 143 -6 6 938 802 187 98 5 chr11 46354069 46354263 -75489593 + B3 SINE B2 5 216 0 6 938 263 28 0 27 chr11 46354575 46354612 -75489244 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 6 938 322 258 34 0 chr11 46354620 46354709 -75489147 + B1F SINE Alu 3 94 -55 6 938 639 0 0 0 chr11 46354975 46355046 -75488810 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 938 384 269 65 0 chr11 46355380 46355488 -75488368 - L1M5 LINE L1 -331 5793 5679 6 938 502 237 35 0 chr11 46355770 46355884 -75487972 + B1F SINE Alu 6 123 -26 6 938 198 0 0 0 chr11 46356149 46356171 -75487685 + (CAA)n Simple_repeat Simple_repeat 3 24 0 6 938 1878 115 39 22 chr11 46356366 46356677 -75487179 - Lx4A LINE L1 -989 6069 5754 6 938 280 294 43 14 chr11 46357102 46357240 -75486616 - B1_Mur1 SINE Alu -6 143 2 6 938 200 279 66 0 chr11 46357411 46357472 -75486384 + MIR3 SINE MIR 110 174 -34 6 938 297 0 0 0 chr11 46358767 46358800 -75485056 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 938 371 191 65 82 chr11 46358800 46359045 -75484811 - RMER17D LTR ERVK -446 443 203 6 938 428 270 9 9 chr11 46358969 46359081 -75484775 - RSINE1 SINE B4 -51 114 3 6 938 266 0 29 0 chr11 46359233 46359267 -75484589 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 938 198 0 0 0 chr11 46359279 46359301 -75484555 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 6 938 414 0 0 0 chr11 46359301 46359346 -75484510 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 6 938 281 378 56 28 chr11 46359556 46359771 -75484085 - ID_B1 SINE B4 -3 221 1 6 938 211 221 141 13 chr11 46359838 46359916 -75483940 + PB1D10 SINE Alu 27 114 -3 6 938 504 0 0 0 chr11 46360407 46360463 -75483393 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 938 1614 37 0 0 chr11 46360701 46360890 -75482966 - B2_Mm1a SINE B2 -3 190 2 6 938 258 347 17 62 chr11 46361208 46361386 -75482470 - B3A SINE B2 -16 182 13 6 938 1153 82 0 0 chr11 46362918 46363064 -75480792 - B1_Mus2 SINE Alu 0 147 2 6 938 1482 257 106 30 chr11 46364045 46364678 -75479178 - RMER6C LTR ERVK -7 683 3 6 938 348 285 131 0 chr11 46364694 46364824 -75479032 + B1F SINE Alu 1 147 -2 6 938 421 302 13 80 chr11 46365321 46365472 -75478384 - ID_B1 SINE B4 0 224 84 6 938 466 143 51 0 chr11 46365624 46365722 -75478134 + ID_B1 SINE B4 114 216 -8 6 938 225 265 108 39 chr11 46366204 46366306 -75477550 - ID_B1 SINE B4 -12 212 104 6 938 229 182 0 0 chr11 46366381 46366425 -75477431 + B2_Mm2 SINE B2 1 44 -151 7 938 630 49 0 0 chr11 46366547 46366629 -75477227 + (GA)n Simple_repeat Simple_repeat 2 83 0 7 938 295 313 17 34 chr11 46367109 46367228 -75476628 + PB1D10 SINE Alu 1 117 0 7 938 252 300 52 43 chr11 46368758 46368873 -75474983 - RSINE1 SINE B4 -4 161 46 7 938 225 0 0 0 chr11 46369003 46369028 -75474828 + (T)n Simple_repeat Simple_repeat 1 25 0 7 938 1203 54 0 0 chr11 46369028 46369175 -75474681 - B1_Mus2 SINE Alu 0 147 1 7 938 186 133 0 0 chr11 46369897 46369927 -75473929 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 7 938 192 152 0 0 chr11 46370720 46370753 -75473103 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 938 1428 77 6 0 chr11 46370787 46370970 -75472886 + B2_Mm1a SINE B2 3 186 -7 7 938 1098 160 8 80 chr11 46370987 46371225 -75472631 - RLTR30 LTR ERV1 0 379 159 7 938 547 227 84 7 chr11 46371227 46371382 -75472474 + Lx7 LINE L1 7530 7696 0 7 938 410 298 8 0 chr11 46371397 46371528 -75472328 - RLTR30 LTR ERV1 -246 133 2 7 938 2992 94 0 0 chr11 46372807 46373201 -75470655 - L1_Mus4 LINE L1 -162 6476 6083 7 938 783 73 0 8 chr11 46373201 46373326 -75470530 + L1_Mus4 LINE L1 6513 6636 0 7 938 221 270 48 0 chr11 46373359 46373422 -75470434 + B1F2 SINE Alu 50 115 -34 7 938 4609 241 57 29 chr11 46373422 46373666 -75470190 - RLTR21 LTR ERVK 0 1404 1098 7 938 610 113 19 0 chr11 46373666 46373772 -75470084 + (CATA)n Simple_repeat Simple_repeat 4 111 0 7 938 4609 184 62 48 chr11 46373772 46374370 -75469486 - RLTR21 LTR ERVK -475 1097 502 7 938 322 0 83 0 chr11 46374370 46374418 -75469438 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 7 938 4609 184 62 48 chr11 46374418 46374921 -75468935 - RLTR21 LTR ERVK -1071 501 7 7 938 180 0 0 0 chr11 46375169 46375189 -75468667 + (TTGTG)n Simple_repeat Simple_repeat 4 23 0 7 938 223 186 23 0 chr11 46375370 46375413 -75468443 + CT-rich Low_complexity Low_complexity 4 47 0 7 938 1053 65 65 0 chr11 46376263 46376401 -75467455 + B1_Mus2 SINE Alu 1 147 0 7 938 282 315 32 8 chr11 46376635 46376768 -75467088 - L1M5 LINE L1 -331 5793 5654 7 938 419 301 35 0 chr11 46377020 46377133 -75466723 + B1F SINE Alu 7 123 -26 7 938 279 327 10 0 chr11 46377756 46377857 -75465999 - L1M5 LINE L1 -331 5793 5692 7 938 242 306 0 67 chr11 46378631 46378750 -75465106 + PB1D10 SINE Alu 1 111 -6 7 938 304 303 57 81 chr11 46379224 46379522 -75464334 + B4A SINE B4 2 292 0 7 938 490 273 36 0 chr11 46379639 46379778 -75464078 + B3 SINE B2 4 147 -69 7 938 239 184 130 46 chr11 46379817 46379900 -75463956 - Lx9 LINE L1 -1307 6337 6242 7 938 324 0 0 0 chr11 46379900 46379936 -75463920 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 938 239 184 130 46 chr11 46379936 46379960 -75463896 - Lx9 LINE L1 -1403 6241 6221 7 938 6218 95 15 9 chr11 46379990 46380071 -75463785 + Lx2 LINE L1 6123 6202 -795 7 938 6611 44 18 1 chr11 46380071 46380866 -75462990 + RLTR13C2 LTR ERVK 1 808 0 7 938 6218 95 15 9 chr11 46380866 46381654 -75462202 + Lx2 LINE L1 6203 6997 0 7 938 22 0 0 0 chr11 46381675 46381697 -75462159 + AT_rich Low_complexity Low_complexity 1 22 0 7 938 649 265 53 19 chr11 46382105 46382313 -75461543 + ID_B1 SINE B4 7 221 -3 7 938 652 186 27 0 chr11 46382464 46382595 -75461261 + B1_Mus2 SINE Alu 3 136 -11 7 938 249 33 0 0 chr11 46382595 46382625 -75461231 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 7 938 240 35 0 0 chr11 46382705 46382734 -75461122 + (TTGG)n Simple_repeat Simple_repeat 2 30 0 7 938 9294 82 20 81 chr11 46382974 46384278 -75459578 + MusHAL1 LINE L1 614 1897 -815 7 938 512 120 0 0 chr11 46384278 46384353 -75459503 + B1_Mus2 SINE Alu 1 75 -72 7 938 9294 82 20 81 chr11 46384353 46384542 -75459314 + MusHAL1 LINE L1 1898 2085 -627 7 938 182 261 71 14 chr11 46384777 46384847 -75459009 + MIR3 SINE MIR 105 178 -30 7 938 843 139 13 53 chr11 46385861 46386013 -75457843 - B1_Mur3 SINE Alu -2 147 2 7 938 327 68 0 63 chr11 46386806 46386869 -75456987 + B1_Mur4 SINE Alu 2 60 -90 7 938 1082 160 0 11 chr11 46386869 46387046 -75456810 + (CAGAGA)n Simple_repeat Simple_repeat 5 179 0 7 938 226 178 112 56 chr11 46387047 46387154 -75456702 + RLTR25B LTR ERVK 397 509 -519 7 938 725 43 0 0 chr11 46387091 46387185 -75456671 + B1_Mus2 SINE Alu 42 135 -12 7 938 594 0 0 0 chr11 46387185 46387251 -75456605 + (CAAAA)n Simple_repeat Simple_repeat 3 68 0 7 938 215 194 0 0 chr11 46387526 46387562 -75456294 + B1_Mus2 SINE Alu 2 37 -110 7 938 245 172 138 0 chr11 46388690 46388748 -75455108 - ID4 SINE ID -16 67 2 7 938 335 382 8 0 chr11 46389157 46389288 -75454568 - ID_B1 SINE B4 -9 215 84 7 938 1042 203 61 30 chr11 46389361 46389656 -75454200 + Lx9 LINE L1 7340 7643 -1 7 938 233 297 0 0 chr11 46389677 46389741 -75454115 + ID_B1 SINE B4 78 141 -83 7 938 276 239 216 0 chr11 46389690 46389778 -75454078 + B1F1 SINE Alu 10 116 -1 7 938 1143 76 7 0 chr11 46389781 46389926 -75453930 + B1_Mus1 SINE Alu 3 148 0 7 938 180 0 0 0 chr11 46389932 46389952 -75453904 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 938 719 59 10 0 chr11 46389952 46390053 -75453803 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 7 938 790 183 42 0 chr11 46390060 46390202 -75453654 + B1_Mur1 SINE Alu 2 149 0 7 938 699 12 0 0 chr11 46390240 46390320 -75453536 + (GA)n Simple_repeat Simple_repeat 1 80 0 7 938 254 274 0 0 chr11 46390490 46390552 -75453304 + tRNA-Ala-GCA tRNA tRNA 1 62 -13 7 938 1130 54 0 75 chr11 46391105 46391264 -75452592 + B1_Mus2 SINE Alu 1 147 0 7 938 536 42 14 0 chr11 46391265 46391336 -75452520 + (GA)n Simple_repeat Simple_repeat 2 73 0 7 938 1671 31 0 0 chr11 46391780 46391971 -75451885 + B2_Mm1t SINE B2 2 192 -1 7 938 207 0 0 0 chr11 46392562 46392585 -75451271 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 7 938 474 333 54 0 chr11 46392588 46392717 -75451139 + RSINE1 SINE B4 11 146 -19 7 938 348 88 0 0 chr11 46392966 46393023 -75450833 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 7 938 198 0 0 0 chr11 46394041 46394063 -75449793 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 7 938 331 271 20 30 chr11 46394436 46394535 -75449321 - B1F2 SINE Alu -23 126 29 7 938 2321 165 17 21 chr11 46394630 46394913 -75448943 + MTC LTR MaLR 3 280 -141 7 938 1680 85 246 15 chr11 46394913 46395177 -75448679 - ORR1A2 LTR MaLR 0 327 3 7 938 2321 165 17 21 chr11 46395177 46395314 -75448542 + MTC LTR MaLR 281 421 0 7 938 744 111 14 7 chr11 46395658 46395803 -75448053 + (CA)n Simple_repeat Simple_repeat 1 146 0 7 938 495 0 0 0 chr11 46395803 46395857 -75447999 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 938 527 322 72 29 chr11 46396160 46396505 -75447351 - MLT1A0 LTR MaLR -5 360 1 7 938 273 70 35 17 chr11 46396543 46396601 -75447255 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 938 391 286 20 41 chr11 46398516 46398662 -75445194 - B3 SINE B2 -57 159 17 7 938 659 192 115 10 chr11 46398698 46398898 -75444958 - Lx9 LINE L1 -1 7643 7423 7 938 213 341 11 21 chr11 46399040 46399133 -75444723 + PB1D10 SINE Alu 19 110 -7 7 939 295 248 49 10 chr11 46399772 46399874 -75443982 + CT-rich Low_complexity Low_complexity 4 109 0 7 939 264 130 0 0 chr11 46399879 46399925 -75443931 + (TCC)n Simple_repeat Simple_repeat 1 46 0 7 939 254 232 150 50 chr11 46400210 46400310 -75443546 + B3A SINE B2 11 120 -78 7 939 180 0 0 0 chr11 46400344 46400364 -75443492 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 939 23 0 0 0 chr11 46400454 46400477 -75443379 + AT_rich Low_complexity Low_complexity 1 23 0 7 939 189 107 0 0 chr11 46400913 46400941 -75442915 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 939 4809 143 16 75 chr11 46401908 46402852 -75441004 + RMER12 LTR ERVK 1 888 -434 7 939 366 115 0 0 chr11 46402852 46402913 -75440943 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 939 918 0 0 0 chr11 46402929 46403031 -75440825 + (TTTCC)n Simple_repeat Simple_repeat 2 103 0 7 939 225 366 0 0 chr11 46403075 46403247 -75440609 + C-rich Low_complexity Low_complexity 5 176 0 7 939 918 30 17 51 chr11 46403219 46403395 -75440461 + (TCTCC)n Simple_repeat Simple_repeat 2 171 0 7 939 396 0 0 0 chr11 46403397 46403441 -75440415 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 7 939 808 154 36 67 chr11 46403453 46403648 -75440208 + RMER12 LTR ERVK 1134 1322 0 7 939 478 269 33 40 chr11 46405105 46405256 -75438600 + B3A SINE B2 49 198 0 7 939 372 175 96 40 chr11 46405280 46405405 -75438451 + RLTR22_Mur LTR ERVK 1002 1133 -715 7 939 521 241 172 26 chr11 46405423 46405615 -75438241 + ID_B1 SINE B4 2 221 -3 7 939 330 242 14 3 chr11 46406334 46406425 -75437431 + B1_Mur2 SINE Alu 33 123 -26 7 939 333 0 0 0 chr11 46406446 46406483 -75437373 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 939 366 23 0 0 chr11 46406483 46406525 -75437331 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 939 38 22 0 0 chr11 46406583 46406628 -75437228 + AT_rich Low_complexity Low_complexity 1 45 0 7 939 409 301 59 18 chr11 46406651 46406820 -75437036 - B3 SINE B2 -33 183 8 7 939 1183 68 0 0 chr11 46407071 46407218 -75436638 + B1_Mus1 SINE Alu 2 148 0 7 939 233 242 48 0 chr11 46407627 46407689 -75436167 - ID_B1 SINE B4 -9 215 151 7 939 281 254 0 43 chr11 46407870 46407940 -75435916 - PB1D10 SINE Alu -1 116 50 7 939 292 233 23 11 chr11 46408033 46408120 -75435736 + L1MD3 LINE L1 7824 7911 -84 7 939 234 331 70 8 chr11 46408726 46408854 -75435002 + L1M5 LINE L1 5666 5801 -393 7 939 291 28 0 0 chr11 46409226 46409262 -75434594 + (TTG)n Simple_repeat Simple_repeat 2 37 0 7 939 472 259 37 0 chr11 46409529 46409637 -75434219 - B1F SINE Alu -31 118 7 7 939 223 333 23 23 chr11 46409561 46409647 -75434209 - B4A SINE B4 -125 167 82 7 939 405 273 9 0 chr11 46409955 46410066 -75433790 + L1M5 LINE L1 5678 5792 -332 8 939 217 231 0 0 chr11 46410416 46410455 -75433401 + polypurine Low_complexity Low_complexity 1 39 0 8 939 270 0 0 0 chr11 46410633 46410663 -75433193 + (CACAA)n Simple_repeat Simple_repeat 5 34 0 8 939 4075 167 39 91 chr11 46410885 46411313 -75432543 + RLTR21 LTR ERVK 6 425 -1147 8 939 1200 68 0 0 chr11 46411313 46411460 -75432396 + B1_Mus2 SINE Alu 1 147 0 8 939 4075 167 39 91 chr11 46411460 46412031 -75431825 + RLTR21 LTR ERVK 426 952 -620 8 939 42161 4 0 0 chr11 46412062 46418670 -75425186 - L1Md_A LINE L1 0 6582 11 8 939 664 233 115 38 chr11 46418712 46418847 -75425009 + RLTR21 LTR ERVK 971 1214 -190 8 939 369 109 0 0 chr11 46418847 46418902 -75424954 + (TATG)n Simple_repeat Simple_repeat 4 58 0 8 939 664 243 35 127 chr11 46418902 46418954 -75424902 + RLTR21 LTR ERVK 1215 1253 -151 8 939 306 67 0 0 chr11 46418954 46418999 -75424857 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 8 939 664 243 35 127 chr11 46418999 46419166 -75424690 + RLTR21 LTR ERVK 1254 1404 0 8 939 213 253 75 62 chr11 46419989 46420069 -75423787 - MER5B DNA MER1_type 0 178 98 8 939 399 303 8 0 chr11 46420562 46420694 -75423162 + RLTR30 LTR ERV1 1 133 -246 8 939 556 221 84 7 chr11 46420709 46420864 -75422992 - Lx7 LINE L1 0 7696 7530 8 939 1069 178 8 76 chr11 46420866 46421103 -75422753 + RLTR30 LTR ERV1 159 379 0 8 939 189 0 0 0 chr11 46421165 46421186 -75422670 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 939 33 25 0 0 chr11 46422006 46422046 -75421810 + AT_rich Low_complexity Low_complexity 1 40 0 8 939 21 36 0 0 chr11 46422670 46422698 -75421158 + AT_rich Low_complexity Low_complexity 1 28 0 8 939 229 296 0 24 chr11 46423803 46423886 -75419970 + GA-rich Low_complexity Low_complexity 4 84 0 8 939 1086 103 0 0 chr11 46424540 46424686 -75419170 - B1_Mus2 SINE Alu 0 147 2 8 939 253 337 10 10 chr11 46424725 46424821 -75419035 - PB1D10 SINE Alu -21 96 1 8 939 336 77 0 0 chr11 46425299 46425351 -75418505 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 939 252 0 0 0 chr11 46425351 46425379 -75418477 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 939 234 319 29 0 chr11 46425456 46425525 -75418331 - B3A SINE B2 -127 71 1 8 939 267 288 38 0 chr11 46425627 46425707 -75418149 + ID_B1 SINE B4 141 223 -1 8 939 204 154 0 0 chr11 46426682 46426734 -75417122 + GA-rich Low_complexity Low_complexity 129 180 0 8 939 214 0 0 157 chr11 46426735 46426837 -75417019 + (CAGAG)n Simple_repeat Simple_repeat 5 90 0 8 939 359 200 26 71 chr11 46426840 46426953 -75416903 + B1_Mur2 SINE Alu 42 149 0 8 939 386 260 40 0 chr11 46427300 46427400 -75416456 - B1_Mur1 SINE Alu -21 128 25 8 939 465 153 51 0 chr11 46427860 46427958 -75415898 - ID_B1 SINE B4 -8 216 114 8 939 456 276 52 15 chr11 46428110 46428246 -75415610 + ID_B1 SINE B4 84 224 0 8 939 461 256 120 0 chr11 46428777 46428910 -75414946 - B1F SINE Alu 0 149 1 8 939 1095 230 195 45 chr11 46428924 46429524 -75414332 + RMER6C LTR ERVK 1 690 0 8 939 189 0 0 0 chr11 46429763 46429784 -75414072 + (TA)n Simple_repeat Simple_repeat 2 22 0 8 939 393 209 19 0 chr11 46429897 46430055 -75413801 + CT-rich Low_complexity Low_complexity 2 162 0 8 939 489 208 122 8 chr11 46430942 46431073 -75412783 + B1_Mur2 SINE Alu 4 149 0 8 939 1490 58 21 0 chr11 46431246 46431435 -75412421 + B2_Mm2 SINE B2 2 194 -1 8 939 239 0 32 0 chr11 46431519 46431550 -75412306 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 939 288 0 0 0 chr11 46431696 46431728 -75412128 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 939 362 341 92 0 chr11 46432013 46432177 -75411679 - B3A SINE B2 -18 180 2 8 939 1185 48 7 0 chr11 46432950 46433095 -75410761 + B1_Mus1 SINE Alu 3 148 0 8 939 208 135 0 0 chr11 46433095 46433132 -75410724 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 8 939 487 304 6 25 chr11 46434716 46434878 -75408978 - RSINE1 SINE B4 -4 161 3 8 939 393 80 0 0 chr11 46435594 46435644 -75408212 - L1_Mus1 LINE L1 -713 5854 5805 8 939 5721 56 1 0 chr11 46435644 46436378 -75407478 + L1_Mus1 LINE L1 5872 6567 0 8 939 514 163 0 11 chr11 46436685 46436778 -75407078 + RLTR23 LTR ERV1 8 99 -331 8 939 234 352 0 27 chr11 46437098 46437171 -75406685 - MT2B LTR ERVL -354 247 177 8 939 322 267 93 0 chr11 46437108 46437183 -75406673 - PB1D9 SINE Alu -38 82 1 8 939 238 259 123 0 chr11 46437193 46437274 -75406582 - PB1D7 SINE Alu -8 112 22 8 939 24 0 0 0 chr11 46437291 46437315 -75406541 + AT_rich Low_complexity Low_complexity 1 24 0 8 939 429 121 0 0 chr11 46437489 46437572 -75406284 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 939 198 147 47 38 chr11 46437636 46437742 -75406114 + (TTTG)n Simple_repeat Simple_repeat 2 108 0 8 939 526 200 96 75 chr11 46437745 46437891 -75405965 - B1_Mur1 SINE Alu 0 149 1 8 939 214 325 12 0 chr11 46438187 46438267 -75405589 + ID4 SINE ID 2 82 -1 8 939 833 45 0 0 chr11 46439632 46439742 -75404114 + B1_Mus2 SINE Alu 2 111 -36 8 939 233 326 20 116 chr11 46439803 46440001 -75403855 + B3A SINE B2 19 197 -1 8 939 22 70 0 0 chr11 46440261 46440304 -75403552 + AT_rich Low_complexity Low_complexity 1 43 0 8 939 305 358 65 37 chr11 46441154 46441369 -75402487 + ID_B1 SINE B4 1 221 -3 8 939 3383 38 5 0 chr11 46441747 46442141 -75401715 + MTA_Mm LTR MaLR 1 396 0 8 939 225 0 0 0 chr11 46442190 46442215 -75401641 + (A)n Simple_repeat Simple_repeat 1 25 0 8 939 1038 96 7 0 chr11 46442217 46442363 -75401493 + B1_Mus2 SINE Alu 1 147 0 8 939 232 287 83 9 chr11 46443278 46443387 -75400469 - MurSatRep1 Unknown Unknown -1851 286 170 8 939 276 30 0 0 chr11 46443629 46443662 -75400194 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 8 939 454 270 102 24 chr11 46443874 46444079 -75399777 - ID_B1 SINE B4 0 224 4 8 939 342 0 0 0 chr11 46444096 46444134 -75399722 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 939 574 267 118 9 chr11 46444402 46444614 -75399242 - RMER1C Other Other -296 1046 812 8 939 314 219 47 0 chr11 46444671 46444735 -75399121 - RMER1C Other Other -1202 140 74 8 939 420 20 0 0 chr11 46444868 46444917 -75398939 + (TGG)n Simple_repeat Simple_repeat 3 51 0 8 939 237 176 20 0 chr11 46445641 46445692 -75398164 - L1M2c LINE L1 -6415 374 323 8 939 231 261 53 95 chr11 46445975 46446144 -75397712 + L1MC1 LINE L1 5647 5808 -536 8 939 285 321 93 9 chr11 46446161 46446268 -75397588 + PB1D10 SINE Alu 2 117 0 8 939 510 290 104 0 chr11 46446281 46446464 -75397392 + B3 SINE B2 10 211 -5 8 939 225 0 0 0 chr11 46446466 46446491 -75397365 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 939 443 285 79 0 chr11 46446694 46446859 -75396997 + L1MC1 LINE L1 6041 6218 -115 8 939 287 276 9 28 chr11 46446869 46446977 -75396879 + CT-rich Low_complexity Low_complexity 2 107 0 8 939 364 219 10 59 chr11 46446994 46447018 -75396838 + L1MC1 LINE L1 6228 6249 -84 8 939 1862 116 12 65 chr11 46447018 46447358 -75396498 - RLTRETN_Mm LTR ERVK 0 322 1 8 939 364 219 10 59 chr11 46447358 46447435 -75396421 + L1MC1 LINE L1 6250 6324 -9 8 939 5109 86 30 10 chr11 46447567 46448339 -75395517 + RLTR13D1 LTR ERVK 1 787 -19 8 939 213 139 0 0 chr11 46449753 46449796 -75394060 + (CCAA)n Simple_repeat Simple_repeat 1 43 0 8 939 561 30 0 0 chr11 46451097 46451164 -75392692 + (GA)n Simple_repeat Simple_repeat 1 67 0 8 939 1010 38 0 0 chr11 46451434 46451565 -75392291 + B1_Mus1 SINE Alu 18 148 0 8 939 331 253 40 40 chr11 46451688 46451787 -75392069 + RSINE1 SINE B4 46 144 -21 8 939 569 176 84 49 chr11 46452156 46452299 -75391557 + B1_Mur4 SINE Alu 2 149 -1 8 939 508 248 53 0 chr11 46452370 46452503 -75391353 + B1F SINE Alu 1 140 -9 8 939 311 273 0 33 chr11 46453172 46453263 -75390593 - B1_Mur3 SINE Alu -1 148 61 8 939 216 221 0 29 chr11 46453633 46453671 -75390185 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 8 939 1026 92 14 0 chr11 46453671 46453813 -75390043 + B1_Mm SINE Alu 3 146 -1 8 939 216 221 0 29 chr11 46453813 46453844 -75390012 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 8 939 1239 34 7 0 chr11 46454332 46454478 -75389378 + B1_Mus1 SINE Alu 2 148 0 8 939 414 0 0 0 chr11 46454478 46454524 -75389332 + (A)n Simple_repeat Simple_repeat 1 46 0 8 939 1150 88 0 12 chr11 46457065 46457227 -75386629 + L1_Mus1 LINE L1 6408 6567 0 8 939 1182 61 0 0 chr11 46457235 46457382 -75386474 + B1_Mus2 SINE Alu 1 147 0 8 939 368 295 28 19 chr11 46459559 46459666 -75384190 + RMER20B LTR ERVK 495 602 -25 8 939 1345 83 44 6 chr11 46459912 46460093 -75383763 + B2_Mm2 SINE B2 1 188 -7 8 939 501 223 23 62 chr11 46460578 46460707 -75383149 - B1_Mur1 SINE Alu -25 124 1 8 939 227 300 12 0 chr11 46460995 46461075 -75382781 + ID4 SINE ID 2 82 -1 8 939 1176 71 0 17 chr11 46461318 46461490 -75382366 + B2_Mm2 SINE B2 8 176 -19 8 939 254 350 23 52 chr11 46462624 46462796 -75381060 + B3A SINE B2 16 182 -16 8 939 23 92 0 0 chr11 46462813 46462878 -75380978 + AT_rich Low_complexity Low_complexity 1 65 0 8 939 336 64 0 0 chr11 46463823 46463870 -75379986 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 8 939 216 86 0 0 chr11 46463879 46463914 -75379942 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 939 209 253 80 0 chr11 46465151 46465226 -75378630 - MIR3 SINE MIR -23 185 105 8 939 304 275 57 16 chr11 46465408 46465530 -75378326 + B1_Mur1 SINE Alu 2 128 -21 8 939 501 206 11 17 chr11 46465731 46465909 -75377947 + (CCAA)n Simple_repeat Simple_repeat 3 179 0 8 939 220 218 18 0 chr11 46466441 46466496 -75377360 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 939 1113 68 0 39 chr11 46466860 46467013 -75376843 - B1_Mus1 SINE Alu 0 148 2 8 939 313 331 102 0 chr11 46467174 46467301 -75376555 - ID_B1 SINE B4 0 224 85 8 939 21 0 0 0 chr11 46468295 46468316 -75375540 + AT_rich Low_complexity Low_complexity 1 21 0 8 939 291 256 117 29 chr11 46468672 46468809 -75375047 - RLTR13C2 LTR ERVK -22 786 638 9 939 186 43 0 0 chr11 46469571 46469594 -75374262 + (GAA)n Simple_repeat Simple_repeat 2 24 0 9 939 880 310 63 24 chr11 46469670 46470272 -75373584 - MMTV-int LTR ERVK -292 5516 4977 9 939 2171 317 64 59 chr11 46471230 46472966 -75370890 - MMTV-int LTR ERVK -3995 3258 1515 9 939 3491 79 0 0 chr11 46473038 46473492 -75370364 - L1Md_T LINE L1 0 6582 6129 9 939 280 23 68 0 chr11 46473683 46473727 -75370129 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9 939 1232 34 0 7 chr11 46473727 46473874 -75369982 - B1_Mm SINE Alu 0 147 2 9 939 394 235 86 9 chr11 46473900 46474035 -75369821 - ETnERV2-int LTR ERVK -7275 131 1 9 939 298 252 50 43 chr11 46474069 46474207 -75369649 - RLTR13C2 LTR ERVK -44 764 638 9 939 414 0 0 0 chr11 46475178 46475224 -75368632 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 939 393 39 0 0 chr11 46475224 46475274 -75368582 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 939 265 264 28 0 chr11 46475476 46475548 -75368308 + CT-rich Low_complexity Low_complexity 1 74 0 9 939 425 188 135 29 chr11 46475621 46475725 -75368131 - RSINE1 SINE B4 -44 121 7 9 939 1728 185 43 0 chr11 46476275 46476626 -75367230 - ORR1D1 LTR MaLR 0 374 9 9 939 4193 53 6 8 chr11 46477498 46478025 -75365831 - L1_Mus2 LINE L1 0 6566 6041 9 939 352 308 32 91 chr11 46478161 46478347 -75365509 + MTE2a LTR MaLR 123 297 -82 9 939 1276 246 109 22 chr11 46478734 46479137 -75364719 - RMER1C Other Other -119 1223 786 9 939 406 198 151 0 chr11 46479176 46479262 -75364594 - RMER1C Other Other -1202 140 42 9 939 237 157 20 0 chr11 46480114 46480165 -75363691 - L1M2c LINE L1 -6415 374 323 9 939 235 279 49 49 chr11 46480444 46480587 -75363269 + L1MC1 LINE L1 5647 5789 -555 9 939 242 357 36 0 chr11 46480640 46480752 -75363104 + PB1D10 SINE Alu 2 117 0 9 939 519 303 100 11 chr11 46480757 46480947 -75362909 + B3 SINE B2 4 210 -6 9 939 1180 75 0 0 chr11 46480947 46481094 -75362762 + B1_Mus2 SINE Alu 1 147 0 9 939 323 23 0 22 chr11 46481099 46481144 -75362712 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 9 939 295 261 84 68 chr11 46481357 46481544 -75362312 + L1MC1 LINE L1 6024 6223 -110 9 939 187 173 19 19 chr11 46481549 46481602 -75362254 + CT-rich Low_complexity Low_complexity 4 56 0 9 939 335 177 0 16 chr11 46481678 46481741 -75362115 + L1MC1 LINE L1 6261 6322 -11 9 939 264 30 0 0 chr11 46483234 46483267 -75360589 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 9 939 207 146 0 0 chr11 46483275 46483316 -75360540 + (CCAA)n Simple_repeat Simple_repeat 3 43 0 9 939 246 244 33 55 chr11 46484898 46484989 -75358867 + RSINE1 SINE B4 46 134 -31 9 939 679 185 15 8 chr11 46485176 46485307 -75358549 + MYSERV16_I-int LTR ERVK 1216 1347 -979 9 939 1038 68 0 0 chr11 46485327 46485473 -75358383 - B1_Mus2 SINE Alu 0 147 2 9 939 513 0 0 0 chr11 46486042 46486099 -75357757 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 9 939 200 111 28 0 chr11 46486112 46486148 -75357708 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 9 939 576 233 0 29 chr11 46486159 46486296 -75357560 - B1_Mur2 SINE Alu -16 133 1 9 939 543 202 18 18 chr11 46486344 46486455 -75357401 + B1_Mur3 SINE Alu 18 128 -21 9 939 311 264 26 35 chr11 46486482 46486596 -75357260 + RLTR16 LTR ERVK 32 144 -361 9 939 2152 168 107 4 chr11 46486596 46487063 -75356793 + MYSERV16_I-int LTR ERVK 1240 1754 -572 9 939 449 280 135 47 chr11 46487151 46487425 -75356431 + RLTR16 LTR ERVK 1 298 -207 9 939 243 74 0 69 chr11 46487759 46487817 -75356039 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 9 939 266 50 25 0 chr11 46489458 46489498 -75354358 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 9 939 213 338 52 110 chr11 46489519 46489555 -75354301 + B4 SINE B4 55 217 -75 9 939 625 226 22 0 chr11 46489555 46489692 -75354164 + B1F SINE Alu 1 140 -9 9 939 1166 102 30 1 chr11 46491231 46491437 -75352419 + RLTR22_Mur LTR ERVK 1577 1826 -22 9 939 269 295 26 109 chr11 46498494 46498650 -75345206 + RSINE1 SINE B4 19 161 -4 9 939 836 143 71 0 chr11 46498905 46499045 -75344811 + B1_Mur4 SINE Alu 1 150 0 9 939 857 136 27 0 chr11 46499853 46500000 -75343856 + B2_Mm2 SINE B2 1 151 -44 9 939 357 96 316 9 chr11 46500073 46500187 -75343669 + B2_Mm2 SINE B2 47 195 0 1 939 325 158 12 12 chr11 46500926 46501009 -75342847 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 939 453 215 66 8 chr11 46501086 46501208 -75342648 - B1_Mur1 SINE Alu 0 149 21 3 939 255 302 52 0 chr11 46501378 46501474 -75342382 - PB1D10 SINE Alu -5 112 12 4 939 331 315 18 0 chr11 46501566 46501677 -75342179 + ID_B1 SINE B4 103 215 -9 5 939 26 30 0 0 chr11 46501862 46501895 -75341961 + AT_rich Low_complexity Low_complexity 1 33 0 6 939 291 289 0 5 chr11 46502113 46502225 -75341631 + ID4 SINE ID 2 111 -41 7 939 271 309 54 9 chr11 46502422 46502533 -75341323 + B1F2 SINE Alu 25 140 -9 8 939 1043 105 14 0 chr11 46503294 46503437 -75340419 + B1_Mm SINE Alu 3 147 0 9 939 328 82 59 0 chr11 46504021 46504069 -75339787 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1 939 1117 97 0 0 chr11 46504069 46504214 -75339642 - B1_Mus2 SINE Alu -1 146 2 1 939 328 82 59 0 chr11 46504214 46504250 -75339606 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 939 551 219 16 0 chr11 46505121 46505244 -75338612 + B1_Mur4 SINE Alu 9 133 -17 1 939 672 99 0 0 chr11 46505246 46505357 -75338499 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 939 414 308 50 45 chr11 46505370 46505591 -75338265 + RMER5 LTR ERV1 304 525 -9 1 939 426 297 43 0 chr11 46506268 46506406 -75337450 + B1F SINE Alu 5 148 -1 1 939 251 259 49 0 chr11 46506425 46506506 -75337350 + B1F1 SINE Alu 10 94 -55 1 939 247 281 67 27 chr11 46506791 46506941 -75336915 - RSINE1 SINE B4 -4 161 6 1 939 228 81 0 0 chr11 46507444 46507481 -75336375 - B1_Mm SINE Alu -1 146 110 1 939 955 24 8 0 chr11 46507476 46507602 -75336254 + B1_Mm SINE Alu 21 147 0 2 939 426 20 0 0 chr11 46507688 46507739 -75336117 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 939 3364 114 113 23 chr11 46508033 46508588 -75335268 - RLTR1D LTR ERV1 0 605 1 2 939 998 164 21 120 chr11 46508634 46508827 -75335029 - RMER4B LTR ERVK -329 256 66 2 939 706 156 125 0 chr11 46508827 46508955 -75334901 + B1_Mm SINE Alu 3 146 -1 2 939 998 164 21 120 chr11 46508955 46509045 -75334811 - RMER4B LTR ERVK -520 65 1 2 939 358 253 106 0 chr11 46509378 46509503 -75334353 - B1F SINE Alu -1 148 3 2 939 210 235 0 115 chr11 46509598 46509728 -75334128 + (CCCCAG)n Simple_repeat Simple_repeat 1 115 0 2 939 299 208 0 27 chr11 46509729 46509803 -75334053 + PB1D10 SINE Alu 23 94 -23 2 939 1295 20 0 0 chr11 46509911 46510058 -75333798 + B1_Mm SINE Alu 1 147 0 2 939 457 267 7 78 chr11 46510106 46510248 -75333608 + B1_Mur2 SINE Alu 12 143 -6 2 939 282 138 0 0 chr11 46510430 46510450 -75333406 + (T)n Simple_repeat Simple_repeat 1 20 0 3 939 1023 99 43 0 chr11 46510450 46510591 -75333265 - B1_Mus2 SINE Alu 0 147 1 3 939 282 138 0 0 chr11 46510591 46510635 -75333221 + (T)n Simple_repeat Simple_repeat 1 44 0 3 939 344 279 150 0 chr11 46510768 46510915 -75332941 + ID_B1 SINE B4 45 213 -11 3 939 696 228 198 11 chr11 46511329 46511511 -75332345 + B3 SINE B2 1 216 0 3 939 374 236 11 22 chr11 46512255 46512357 -75331499 + PB1D9 SINE Alu 19 119 -1 3 939 1384 91 5 5 chr11 46512758 46512946 -75330910 - B2_Mm2 SINE B2 -7 188 1 3 939 2816 139 119 80 chr11 46512946 46513609 -75330247 + RMER6C LTR ERVK 2 690 0 3 939 1254 139 24 39 chr11 46513625 46513936 -75329920 - RLTR14 LTR ERV1 -18 364 1 3 939 301 210 0 46 chr11 46513936 46514001 -75329855 - RLTR14-int LTR ERV1 -7 5310 5249 3 939 2117 162 211 0 chr11 46514009 46514458 -75329398 - RLTR14-int LTR ERV1 -565 4752 4210 3 939 1166 61 0 7 chr11 46514463 46514611 -75329245 - B1_Mus2 SINE Alu 0 147 1 3 939 9900 97 9 33 chr11 46514614 46515330 -75328526 - L1_Mm LINE L1 -585 5298 4588 4 939 1049 80 0 28 chr11 46515330 46515471 -75328385 + B1_Mus2 SINE Alu 1 137 -10 4 939 188 0 74 0 chr11 46515471 46515498 -75328358 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 939 9900 97 9 33 chr11 46515498 46515821 -75328035 - L1_Mm LINE L1 -1296 4587 4279 4 939 1178 55 0 7 chr11 46515821 46515969 -75327887 - B1_Mm SINE Alu 0 147 1 4 939 9900 97 9 33 chr11 46515969 46516420 -75327436 - L1_Mm LINE L1 -1605 4278 3842 4 939 2618 171 93 3 chr11 46516420 46517336 -75326520 - RLTR14-int LTR ERV1 -1368 3949 2952 3 939 1868 126 68 20 chr11 46517336 46517691 -75326165 - RMER10B LTR ERVL -24 374 3 4 939 934 143 5 103 chr11 46517694 46517889 -75325967 - RLTR14-int LTR ERV1 -2372 2945 2770 3 939 3576 93 2 0 chr11 46517890 46518396 -75325460 - MT2B LTR ERVL 0 601 95 4 939 3538 155 93 46 chr11 46518418 46519108 -75324748 - RLTR14-int LTR ERV1 -2533 2784 2063 3 939 1116 88 0 26 chr11 46519128 46519280 -75324576 + B1_Mus1 SINE Alu 1 148 0 4 939 195 69 0 0 chr11 46519283 46519312 -75324544 + (A)n Simple_repeat Simple_repeat 1 29 0 4 939 1432 256 88 13 chr11 46519312 46519778 -75324078 + RLTR19C LTR ERVK 6 506 0 4 939 7214 211 79 90 chr11 46519779 46520063 -75323793 - RLTR14-int LTR ERV1 -3251 2066 1781 3 939 432 0 0 0 chr11 46520063 46520111 -75323745 + (TTTAA)n Simple_repeat Simple_repeat 3 50 0 4 939 864 148 7 0 chr11 46520111 46520246 -75323610 - B1_Mus1 SINE Alu -12 136 1 5 939 7214 211 79 90 chr11 46520246 46520938 -75322918 - RLTR14-int LTR ERV1 -3537 1780 1080 3 939 189 0 0 0 chr11 46520938 46520959 -75322897 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 939 7214 211 79 90 chr11 46520959 46521651 -75322205 - RLTR14-int LTR ERV1 -4238 1079 442 3 939 672 67 0 0 chr11 46521651 46521741 -75322115 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 939 7214 211 79 90 chr11 46521741 46522052 -75321804 - RLTR14-int LTR ERV1 -4876 441 104 3 939 1820 171 91 161 chr11 46522052 46522308 -75321548 - RMER16 LTR ERVK 0 533 257 5 939 1250 41 0 0 chr11 46522308 46522455 -75321401 + B1_Mus1 SINE Alu 2 148 0 5 939 1820 171 91 161 chr11 46522455 46522771 -75321085 - RMER16 LTR ERVK -277 256 1 5 939 7214 211 79 90 chr11 46522771 46522876 -75320980 - RLTR14-int LTR ERV1 -5214 103 5 3 939 504 215 0 18 chr11 46523303 46523412 -75320444 - RLTR14 LTR ERV1 -59 323 217 3 939 1248 89 0 31 chr11 46523441 46523637 -75320219 + B2_Mm2 SINE B2 6 195 0 5 939 530 193 50 36 chr11 46523635 46523775 -75320081 - RLTR14 LTR ERV1 -176 206 65 3 939 23365 113 48 24 chr11 46523965 46525852 -75318004 - Lx LINE L1 -71 6583 4438 5 939 1198 61 0 0 chr11 46525852 46525999 -75317857 - B1_Mus2 SINE Alu 0 147 1 5 939 23365 146 82 14 chr11 46525999 46526930 -75316926 - Lx LINE L1 -1446 4437 3488 5 939 249 57 0 0 chr11 46526930 46526965 -75316891 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 939 23365 138 80 14 chr11 46526965 46529538 -75314318 - Lx LINE L1 -2396 3487 903 5 939 1970 110 12 51 chr11 46529538 46529873 -75313983 - RLTRETN_Mm LTR ERVK 0 322 1 5 939 4673 100 69 11 chr11 46529873 46530129 -75313727 - Lx LINE L1 -5732 902 605 5 117 726 230 61 14 chr11 46530349 46530561 -75313295 - ID_B1 SINE B4 0 224 3 6 940 275 0 29 0 chr11 46530731 46530766 -75313090 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 940 817 176 13 13 chr11 46530793 46530943 -75312913 - B1_Mur4 SINE Alu 0 150 1 6 940 1023 110 7 0 chr11 46530990 46531135 -75312721 + B1_Mus2 SINE Alu 2 147 0 6 940 1876 162 47 30 chr11 46531247 46531610 -75312246 + MTB_Mm LTR MaLR 1 369 -38 6 940 565 154 7 53 chr11 46531612 46531763 -75312093 + T-rich Low_complexity Low_complexity 2 145 0 6 940 195 100 0 0 chr11 46531915 46531945 -75311911 + (TA)n Simple_repeat Simple_repeat 1 30 0 6 940 228 316 210 22 chr11 46532016 46532197 -75311659 - B3 SINE B2 -1 215 1 6 940 783 240 22 0 chr11 46532241 46532424 -75311432 + MTEa LTR MaLR 140 326 -53 6 940 201 162 0 0 chr11 46532450 46532487 -75311369 + A-rich Low_complexity Low_complexity 1 37 0 6 940 407 19 0 19 chr11 46532576 46532629 -75311227 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 7 940 936 255 5 19 chr11 46533115 46533331 -75310525 - B3 SINE B2 0 216 4 7 940 611 228 124 26 chr11 46534158 46534352 -75309504 + ID_B1 SINE B4 1 213 -11 7 940 789 216 190 28 chr11 46534421 46534774 -75309082 - MTD LTR MaLR 0 419 10 7 940 28 0 0 0 chr11 46534909 46534937 -75308919 + AT_rich Low_complexity Low_complexity 1 28 0 7 940 39711 46 3 7 chr11 46534944 46541262 -75302594 - L1Md_T LINE L1 0 6582 308 7 940 463 16 31 0 chr11 46542287 46542351 -75301505 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 7 940 268 225 0 29 chr11 46542374 46542479 -75301377 + GA-rich Low_complexity Low_complexity 2 103 0 7 940 462 18 0 0 chr11 46542473 46542528 -75301328 + (CAG)n Simple_repeat Simple_repeat 1 55 0 7 940 738 0 0 0 chr11 46542528 46542610 -75301246 + (GAA)n Simple_repeat Simple_repeat 3 84 0 7 940 1555 180 35 14 chr11 46542707 46542995 -75300861 - Lx5 LINE L1 -606 6444 6151 8 940 521 49 49 0 chr11 46543006 46543087 -75300769 - L1Md_F3 LINE L1 -1 6583 6499 8 940 341 280 0 74 chr11 46543382 46543490 -75300366 + B1_Mur1 SINE Alu 36 135 -14 8 940 849 47 0 0 chr11 46543490 46543596 -75300260 + (GA)n Simple_repeat Simple_repeat 1 106 0 8 940 272 132 0 0 chr11 46543600 46543638 -75300218 + (GGA)n Simple_repeat Simple_repeat 2 39 0 8 940 552 106 0 0 chr11 46543638 46543723 -75300133 + (GGGGA)n Simple_repeat Simple_repeat 3 87 0 8 940 2289 114 73 6 chr11 46543915 46544269 -75299587 - L1Md_F2 LINE L1 -2 6580 6203 8 940 1390 101 16 0 chr11 46544277 46544465 -75299391 - B2_Mm2 SINE B2 -3 192 2 8 940 291 318 0 83 chr11 46544641 46544761 -75299095 - B1_Mur1 SINE Alu 0 149 40 8 940 1170 55 0 0 chr11 46545054 46545199 -75298657 - B1_Mm SINE Alu -1 146 2 8 940 244 271 182 76 chr11 46545538 46545670 -75298186 + B1F SINE Alu 1 146 -3 9 940 318 309 0 0 chr11 46545674 46545767 -75298089 + ID4 SINE ID 6 98 -54 9 940 571 301 14 0 chr11 46545778 46545924 -75297932 + B3A SINE B2 1 148 -50 9 940 297 0 0 0 chr11 46545967 46546000 -75297856 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 940 37 52 0 0 chr11 46546094 46546152 -75297704 + AT_rich Low_complexity Low_complexity 1 58 0 9 940 393 312 22 7 chr11 46546152 46546291 -75297565 + ID_B1 SINE B4 76 216 -8 9 940 333 301 26 33 chr11 46546543 46546694 -75297162 + B4A SINE B4 2 151 -141 9 940 495 153 70 20 chr11 46546721 46546821 -75297035 - B1F2 SINE Alu -1 148 44 9 940 225 302 65 9 chr11 46547196 46547303 -75296553 - Charlie5 DNA MER1_type -135 2489 2377 9 940 1485 63 21 0 chr11 46547315 46547506 -75296350 + B2_Mm2 SINE B2 1 195 0 9 940 533 43 17 6 chr11 46547520 46547610 -75296246 + B2_Mm1t SINE B2 102 191 -4 1 940 211 104 20 20 chr11 46547832 46547881 -75295975 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 1 940 513 0 0 0 chr11 46548041 46548098 -75295758 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 940 768 230 185 28 chr11 46548683 46549045 -75294811 + MTD LTR MaLR 1 419 0 1 940 611 228 124 26 chr11 46549114 46549308 -75294548 - ID_B1 SINE B4 -11 213 1 1 940 418 268 152 42 chr11 46550124 46550152 -75293704 + B3 SINE B2 1 27 -189 1 940 1623 140 166 37 chr11 46550152 46550501 -75293355 - RMER10B LTR ERVL 0 398 5 1 940 418 268 152 42 chr11 46550501 46550663 -75293193 + B3 SINE B2 28 212 -4 1 940 330 169 0 0 chr11 46551136 46551201 -75292655 + GA-rich Low_complexity Low_complexity 2 66 0 1 940 596 258 42 6 chr11 46551329 46551497 -75292359 - MTE2b LTR MaLR -53 326 153 1 940 443 300 56 50 chr11 46551549 46551728 -75292128 + B3A SINE B2 3 182 -16 1 940 27 0 0 0 chr11 46552015 46552042 -75291814 + AT_rich Low_complexity Low_complexity 1 27 0 1 940 803 226 40 15 chr11 46552274 46552476 -75291380 + ID_B1 SINE B4 3 209 -15 1 940 2653 33 6 0 chr11 46552477 46552814 -75291042 - MTA_Mm LTR MaLR 0 396 58 1 940 382 193 11 33 chr11 46553449 46553540 -75290316 - PB1D9 SINE Alu -1 119 31 1 940 353 285 86 20 chr11 46554825 46555022 -75288834 - ID_B1 SINE B4 -11 213 4 1 940 228 309 82 0 chr11 46555098 46555208 -75288648 + ID_B1 SINE B4 106 224 0 1 940 234 0 0 0 chr11 46555213 46555239 -75288617 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 940 2654 80 26 26 chr11 46555239 46555622 -75288234 + Lx LINE L1 6252 6634 -20 1 940 463 121 0 0 chr11 46555625 46555691 -75288165 - L1_Mus3 LINE L1 -362 6276 6211 1 940 2413 96 11 45 chr11 46555691 46556072 -75287784 + L1_Mus3 LINE L1 6271 6638 0 1 940 31 0 0 0 chr11 46556083 46556114 -75287742 + AT_rich Low_complexity Low_complexity 1 31 0 1 940 487 273 29 0 chr11 46556380 46556519 -75287337 - B1_Mur1 SINE Alu -6 143 1 1 940 314 230 34 22 chr11 46556640 46556729 -75287127 - PB1D10 SINE Alu -5 112 23 1 940 364 243 106 0 chr11 46556860 46556985 -75286871 + B1F SINE Alu 3 148 -1 1 940 2660 52 0 0 chr11 46558336 46558660 -75285196 + L1Md_T LINE L1 6247 6570 -12 1 940 595 315 16 32 chr11 46559107 46559294 -75284562 - B3A SINE B2 -14 184 1 1 940 288 267 67 27 chr11 46559816 46559966 -75283890 + RSINE1 SINE B4 6 161 -4 1 940 338 312 0 0 chr11 46560246 46560342 -75283514 - PB1D10 SINE Alu -21 96 1 1 940 303 263 178 0 chr11 46560359 46560477 -75283379 - B1F SINE Alu -5 144 6 1 940 471 281 46 23 chr11 46560725 46560900 -75282956 + B3A SINE B2 2 180 -18 1 940 714 203 14 0 chr11 46560958 46561096 -75282760 + B1_Mur2 SINE Alu 1 140 -9 1 940 258 280 65 9 chr11 46561110 46561218 -75282638 - MER3 DNA MER1_type -85 124 11 1 940 268 254 28 48 chr11 46561219 46561319 -75282537 + B1F1 SINE Alu 3 95 -25 1 940 465 19 0 0 chr11 46561319 46561373 -75282483 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 940 432 0 0 0 chr11 46561373 46561420 -75282436 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 940 245 278 23 115 chr11 46561420 46561448 -75282408 + PB1D7 SINE Alu 96 119 -1 1 940 207 0 0 0 chr11 46561648 46561671 -75282185 + (A)n Simple_repeat Simple_repeat 1 23 0 1 940 211 323 73 31 chr11 46562367 46562463 -75281393 + RSINE1 SINE B4 55 154 -11 1 940 433 305 40 49 chr11 46562519 46562743 -75281113 - RMER5 LTR ERV1 -9 525 304 1 940 210 118 0 0 chr11 46562761 46562795 -75281061 + (TCTCCC)n Simple_repeat Simple_repeat 3 36 0 1 940 684 148 58 29 chr11 46562817 46562831 -75281025 - B1_Mur4 SINE Alu -1 149 139 1 940 513 0 0 0 chr11 46562831 46562888 -75280968 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 1 940 684 148 58 29 chr11 46562888 46563012 -75280844 - B1_Mur4 SINE Alu -12 138 7 1 940 235 312 66 46 chr11 46563019 46563170 -75280686 - RMER5 LTR ERV1 -238 296 143 1 940 231 294 29 17 chr11 46567473 46567646 -75276210 + RMER17D LTR ERVK 243 417 -472 1 940 649 116 207 0 chr11 46567671 46567792 -75276064 - B1_Mur4 SINE Alu -4 146 1 1 940 212 307 0 64 chr11 46568093 46568187 -75275669 - RSINE1 SINE B4 -44 121 34 1 940 3164 54 0 0 chr11 46572485 46572875 -75270981 - L1Md_F2 LINE L1 -1 6581 6192 1 940 1140 102 51 0 chr11 46573096 46573273 -75270583 - ORR1A2 LTR MaLR -49 278 93 1 940 38768 31 0 1 chr11 46573284 46580111 -75263745 - L1Md_T LINE L1 0 6585 1 1 940 492 319 51 23 chr11 46581531 46581881 -75261975 + MLT1A0 LTR MaLR 4 363 -2 1 940 1325 105 15 25 chr11 46582757 46582953 -75260903 - B2_Mm2 SINE B2 0 195 2 1 940 211 339 186 0 chr11 46584173 46584291 -75259565 + B1F SINE Alu 1 140 -9 1 940 216 86 0 0 chr11 46584299 46584334 -75259522 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 940 297 0 0 0 chr11 46584805 46584838 -75259018 + (CAA)n Simple_repeat Simple_repeat 3 35 0 1 940 690 214 8 15 chr11 46584947 46585080 -75258776 - ID_B1 SINE B4 -2 222 91 1 940 460 282 0 0 chr11 46585091 46585201 -75258655 - PB1D10 SINE Alu -6 111 2 1 940 507 308 8 0 chr11 46585549 46585682 -75258174 - ID_B1 SINE B4 -7 217 84 1 940 306 239 128 0 chr11 46585834 46585943 -75257913 + ID_B1 SINE B4 86 208 -16 1 940 859 182 47 66 chr11 46586383 46586641 -75257215 - Lx9 LINE L1 0 7644 7392 1 940 334 333 25 8 chr11 46587604 46587725 -75256131 - ID_B1 SINE B4 -19 205 83 1 940 2171 59 0 4 chr11 46587846 46588119 -75255737 - L1_Mus1 LINE L1 0 6567 6296 1 940 455 247 23 31 chr11 46589130 46589279 -75254577 - B1F SINE Alu -1 148 1 1 940 26 30 0 0 chr11 46590345 46590378 -75253478 + AT_rich Low_complexity Low_complexity 1 33 0 1 940 228 208 38 25 chr11 46590386 46590465 -75253391 + GA-rich Low_complexity Low_complexity 1 80 0 1 940 180 91 22 43 chr11 46590671 46590717 -75253139 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 940 990 25 0 0 chr11 46591415 46591536 -75252320 + (TG)n Simple_repeat Simple_repeat 1 121 0 1 940 183 80 0 0 chr11 46591983 46592008 -75251848 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 940 418 168 60 34 chr11 46594284 46594401 -75249455 - B1_Mus1 SINE Alu 0 148 29 1 940 482 154 0 3 chr11 46595071 46595159 -75248697 - MT2B LTR ERVL -390 85 1 1 940 411 252 0 55 chr11 46596364 46596473 -75247383 - L1MC1 LINE L1 -1 6332 6230 1 940 283 175 29 19 chr11 46596550 46596584 -75247272 + polypurine Low_complexity Low_complexity 2 35 0 1 940 910 97 0 14 chr11 46596584 46596730 -75247126 + (GAA)n Simple_repeat Simple_repeat 3 146 0 1 940 283 175 29 19 chr11 46596730 46596800 -75247056 + GA-rich Low_complexity Low_complexity 36 106 0 1 940 302 295 122 4 chr11 46596810 46597009 -75246847 - L1MC1 LINE L1 -115 6218 5997 1 940 206 231 0 15 chr11 46597045 46597111 -75246745 + CT-rich Low_complexity Low_complexity 3 67 0 1 940 237 157 20 0 chr11 46597432 46597483 -75246373 + L1M2c LINE L1 323 374 -6415 1 940 262 269 90 21 chr11 46598001 46598145 -75245711 + L1M4 LINE L1 5042 5195 -951 1 940 1655 274 39 98 chr11 46598432 46599309 -75244547 + RMER1B Other Other 1 528 -538 1 940 1469 221 154 2 chr11 46599309 46599746 -75244110 + RMER1A Other Other 1 467 -563 1 940 8321 75 5 5 chr11 46599754 46601242 -75242614 + L1_Mus3 LINE L1 5146 6632 -6 1 940 665 302 78 40 chr11 46601274 46601643 -75242213 - L1MDa LINE L1 -1194 5343 4935 1 940 461 281 133 62 chr11 46601656 46601752 -75242104 + L1M2 LINE L1 2508 2596 -3547 1 940 297 0 0 0 chr11 46601752 46601785 -75242071 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 940 461 281 133 62 chr11 46601785 46602072 -75241784 + L1M2 LINE L1 2597 2917 -3226 1 940 249 291 49 21 chr11 46602125 46602269 -75241587 - L1MDa LINE L1 -5427 1206 1059 1 940 1715 229 16 14 chr11 46603334 46603705 -75240151 + ORR1D1 LTR MaLR 3 374 0 1 940 577 210 22 12 chr11 46604425 46604561 -75239295 - B1_Mur2 SINE Alu -1 148 15 1 940 558 0 0 0 chr11 46604639 46604701 -75239155 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 1 940 664 301 62 60 chr11 46604825 46605126 -75238730 + B4A SINE B4 10 281 -11 1 940 723 256 80 0 chr11 46605182 46605381 -75238475 + B3 SINE B2 2 216 0 1 940 1520 59 0 5 chr11 46605404 46605592 -75238264 + B2_Mm2 SINE B2 2 188 -7 1 940 1316 41 6 0 chr11 46605720 46605889 -75237967 + L1Md_F2 LINE L1 6412 6581 -1 1 940 252 86 0 0 chr11 46605950 46605985 -75237871 + (A)n Simple_repeat Simple_repeat 1 35 0 1 940 232 282 230 58 chr11 46606253 46606392 -75237464 - RSINE1 SINE B4 0 165 3 1 940 259 178 0 0 chr11 46606642 46606687 -75237169 - L1MC5 LINE L1 -601 7360 7316 1 940 417 237 11 21 chr11 46606954 46607049 -75236807 + ID_B1 SINE B4 97 190 -34 1 940 480 312 17 23 chr11 46607053 46607230 -75236626 - MLT1C LTR MaLR -286 181 6 1 940 545 262 8 0 chr11 46607941 46608063 -75235793 + B1F SINE Alu 5 127 -22 1 940 938 151 5 53 chr11 46608178 46608367 -75235489 + B2_Mm2 SINE B2 1 180 -15 1 940 1204 74 0 0 chr11 46608388 46608536 -75235320 + B1_Mus1 SINE Alu 1 148 0 1 940 816 159 0 0 chr11 46608544 46608701 -75235155 + GA-rich Low_complexity Low_complexity 2 158 0 1 940 1189 82 0 0 chr11 46608709 46608856 -75235000 + B1_Mus1 SINE Alu 1 147 -1 1 940 935 165 6 0 chr11 46608868 46609044 -75234812 + GA-rich Low_complexity Low_complexity 2 178 0 1 940 229 196 0 0 chr11 46609045 46609062 -75234794 + A-rich Low_complexity Low_complexity 1 17 0 1 940 970 143 0 33 chr11 46609062 46609214 -75234642 + B1_Mus1 SINE Alu 1 147 -1 1 940 229 196 0 0 chr11 46609214 46609242 -75234614 + A-rich Low_complexity Low_complexity 18 45 0 1 940 198 103 0 0 chr11 46610026 46610055 -75233801 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 940 595 323 12 6 chr11 46610096 46610264 -75233592 - ID_B1 SINE B4 -6 218 50 2 940 675 245 37 46 chr11 46610265 46610483 -75233373 + B3 SINE B2 1 216 0 2 940 24 0 0 0 chr11 46610763 46610787 -75233069 + AT_rich Low_complexity Low_complexity 1 24 0 2 940 302 280 60 8 chr11 46610845 46610978 -75232878 - L1M3 LINE L1 -419 5761 5622 2 940 359 228 68 19 chr11 46611224 46611327 -75232529 - PB1 SINE Alu -8 119 12 2 940 339 136 0 0 chr11 46611499 46611558 -75232298 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 940 224 163 0 23 chr11 46611729 46611773 -75232083 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2 940 251 342 33 0 chr11 46612520 46612640 -75231216 - ORR1E LTR MaLR -235 124 1 2 940 252 0 0 0 chr11 46613074 46613102 -75230754 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 940 1131 176 48 10 chr11 46613225 46613432 -75230424 + B3 SINE B2 2 216 0 2 940 1009 303 20 56 chr11 46614646 46615003 -75228853 - MTEa LTR MaLR -35 344 1 2 940 353 273 11 33 chr11 46615013 46615104 -75228752 - RLTR16 LTR ERVK 0 505 417 2 940 387 0 0 0 chr11 46615104 46615147 -75228709 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 940 610 75 21 0 chr11 46615147 46615240 -75228616 + (GA)n Simple_repeat Simple_repeat 1 95 0 2 940 957 159 70 11 chr11 46615241 46615589 -75228267 - RLTR16 LTR ERVK -105 400 2 2 940 4815 51 5 2 chr11 46615976 46616561 -75227295 - LTRIS_Mus LTR ERV1 0 587 1 2 940 460 65 26 0 chr11 46616627 46616704 -75227152 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 940 1614 42 5 0 chr11 46617280 46617471 -75226385 - B2_Mm1a SINE B2 0 193 2 2 940 336 48 0 0 chr11 46617727 46617769 -75226087 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 940 199 306 23 34 chr11 46618277 46618365 -75225491 - MIRb SINE MIR -73 195 109 2 940 2265 58 16 0 chr11 46618507 46618820 -75225036 + RLTR10 LTR ERVK 1 318 -72 2 940 259 65 0 0 chr11 46618846 46618892 -75224964 + RLTR10 LTR ERVK 260 305 -85 2 940 281 159 0 0 chr11 46618892 46618955 -75224901 + RLTR10 LTR ERVK 259 321 -69 2 940 241 211 56 0 chr11 46618961 46619051 -75224805 + RLTR10 LTR ERVK 227 321 -69 2 940 939 53 0 15 chr11 46619052 46619186 -75224670 + RLTR10 LTR ERVK 259 390 0 2 940 243 0 0 0 chr11 46619186 46619213 -75224643 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 940 906 184 7 0 chr11 46619485 46619632 -75224224 + B1_Mus1 SINE Alu 1 148 0 2 940 489 138 0 0 chr11 46619638 46619718 -75224138 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 2 940 225 258 0 16 chr11 46620214 46620277 -75223579 - MLT1K LTR MaLR -23 572 511 2 940 216 122 0 0 chr11 46620781 46620822 -75223034 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 940 413 313 61 8 chr11 46620867 46620999 -75222857 - RSINE1 SINE B4 -15 150 12 2 940 1277 105 15 35 chr11 46621194 46621392 -75222464 - B2_Mm2 SINE B2 0 195 2 2 940 221 253 10 10 chr11 46621517 46621613 -75222243 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 940 1328 168 9 14 chr11 46621693 46621910 -75221946 - B3 SINE B2 0 216 1 2 940 449 293 51 42 chr11 46622304 46622518 -75221338 + RMER15 LTR ERVL 346 561 -14 2 940 704 268 48 48 chr11 46622535 46622709 -75221147 - L1MA4 LINE L1 -404 5896 5730 2 940 1711 164 96 12 chr11 46622709 46623054 -75220802 - ORR1D1 LTR MaLR 0 374 1 2 940 704 268 48 48 chr11 46623054 46623173 -75220683 - L1MA4 LINE L1 -571 5729 5603 2 940 270 221 0 176 chr11 46623144 46623303 -75220553 - L1MC3 LINE L1 -101 7684 7554 2 940 964 231 46 0 chr11 46623320 46623515 -75220341 - B3 SINE B2 -4 212 9 2 940 263 225 0 24 chr11 46623880 46623957 -75219899 + B1_Mur2 SINE Alu 41 113 -36 2 940 710 216 0 26 chr11 46624818 46624970 -75218886 - B1_Mur2 SINE Alu 0 149 2 2 940 528 217 17 9 chr11 46624976 46625092 -75218764 - PB1D10 SINE Alu 0 117 1 2 940 274 251 24 65 chr11 46625627 46625737 -75218119 - PB1D10 SINE Alu 0 117 13 2 940 456 19 0 0 chr11 46626649 46626702 -75217154 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 940 384 152 0 0 chr11 46626702 46626768 -75217088 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 940 696 316 14 0 chr11 46626796 46627005 -75216851 + B3 SINE B2 1 212 -4 2 940 955 135 0 14 chr11 46627023 46627166 -75216690 - B1_Mus1 SINE Alu -6 142 2 2 940 832 285 67 70 chr11 46627199 46627587 -75216269 + Lx8 LINE L1 7087 7473 0 2 940 2258 108 89 25 chr11 46627593 46627953 -75215903 - RLTR9A2 LTR ERVK 0 383 1 2 940 1016 132 184 0 chr11 46628012 46628202 -75215654 - URR1B DNA MER1_type 0 225 1 2 940 378 0 0 0 chr11 46628558 46628600 -75215256 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 940 1296 84 0 0 chr11 46629603 46629782 -75214074 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 940 233 241 17 0 chr11 46631696 46631754 -75212102 + RMER15 LTR ERVL 404 462 -113 2 940 675 178 17 0 chr11 46631787 46631961 -75211895 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 940 233 169 0 58 chr11 46631978 46632047 -75211809 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 2 940 373 90 30 0 chr11 46632054 46632121 -75211735 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 940 639 26 0 0 chr11 46632439 46632516 -75211340 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 940 2724 89 44 8 chr11 46632942 46633328 -75210528 - MTB LTR MaLR 0 400 1 2 940 3150 49 28 3 chr11 46634206 46634596 -75209260 - MTB LTR MaLR 0 400 1 2 940 277 296 11 43 chr11 46634702 46634794 -75209062 - RSINE1 SINE B4 -19 146 58 2 940 341 247 146 38 chr11 46634862 46635029 -75208827 - B3A SINE B2 -18 180 15 2 940 233 330 110 0 chr11 46635573 46635682 -75208174 - L1M5 LINE L1 -509 5615 5495 2 940 237 65 0 0 chr11 46636656 46636687 -75207169 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 940 639 306 12 0 chr11 46636689 46636859 -75206997 - B3A SINE B2 -26 172 1 2 940 2039 92 6 62 chr11 46637274 46637612 -75206244 - ORR1A2 LTR MaLR 0 327 9 2 940 183 42 0 0 chr11 46638331 46638355 -75205501 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 940 726 295 32 28 chr11 46638809 46639025 -75204831 - B4 SINE B4 -12 280 64 2 940 647 280 74 10 chr11 46640612 46640814 -75203042 + ID_B1 SINE B4 1 215 -9 2 940 306 0 0 0 chr11 46640818 46640852 -75203004 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 2 940 212 167 36 18 chr11 46640955 46641010 -75202846 + T-rich Low_complexity Low_complexity 2 57 0 2 940 659 163 49 98 chr11 46641168 46641331 -75202525 - RMER12 LTR ERVK -156 1166 1012 2 940 885 100 0 0 chr11 46641332 46641462 -75202394 + (GAAAA)n Simple_repeat Simple_repeat 2 131 0 2 940 2017 132 249 32 chr11 46641463 46641901 -75201955 - RMER12 LTR ERVK -532 790 258 2 940 4568 241 29 13 chr11 46641901 46642926 -75200930 - Lx5 LINE L1 -4 7046 6005 2 940 342 322 97 46 chr11 46644484 46644722 -75199134 - L1MA4 LINE L1 -168 6132 5883 2 940 7047 52 44 3 chr11 46644733 46645634 -75198222 - L1_Mus1 LINE L1 0 6654 5668 2 940 653 260 61 25 chr11 46645657 46645706 -75198150 - B3A SINE B2 -3 213 159 2 940 393 22 0 0 chr11 46645706 46645752 -75198104 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 940 653 280 18 6 chr11 46645752 46645899 -75197957 - B3A SINE B2 -39 159 10 2 940 518 204 37 0 chr11 46645954 46646062 -75197794 - L1MA4 LINE L1 -596 5695 5584 2 940 270 0 0 0 chr11 46646887 46646917 -75196939 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 940 2330 163 33 40 chr11 46646995 46647416 -75196440 - MTC LTR MaLR -3 418 1 2 940 266 324 0 0 chr11 46647471 46647545 -75196311 - B4A SINE B4 -217 75 2 2 940 1255 47 0 0 chr11 46647563 46647711 -75196145 - B1_Mus1 SINE Alu 0 148 1 2 940 252 0 0 0 chr11 46648059 46648087 -75195769 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 940 474 18 0 0 chr11 46648624 46648679 -75195177 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 940 1110 58 7 0 chr11 46648992 46649146 -75194710 - RMER2 LTR ERV1 -412 155 1 2 940 632 242 0 0 chr11 46649719 46649847 -75194009 + RSINE1 SINE B4 1 128 -37 2 940 764 224 0 86 chr11 46649962 46650172 -75193684 + B3A SINE B2 6 197 -1 2 940 225 0 0 0 chr11 46650238 46650263 -75193593 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 940 261 0 0 0 chr11 46650263 46650291 -75193565 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 940 349 271 35 95 chr11 46651220 46651420 -75192436 - Charlie1b DNA MER1_type -117 406 219 2 940 1586 216 49 11 chr11 46651431 46651796 -75192060 + MTE2b LTR MaLR 1 379 0 2 940 491 314 30 56 chr11 46651796 46652196 -75191660 - MTEb LTR MaLR -7 372 1 2 940 935 134 0 29 chr11 46653224 46653362 -75190494 - B1_Mus2 SINE Alu -11 136 3 2 940 180 77 0 0 chr11 46653377 46653403 -75190453 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 940 425 19 19 0 chr11 46653410 46653464 -75190392 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 940 1028 234 0 24 chr11 46653464 46653670 -75190186 - B3 SINE B2 -14 202 2 2 940 941 270 58 25 chr11 46654245 46654519 -75189337 + B4 SINE B4 4 286 -6 2 940 1765 209 93 55 chr11 46654639 46655111 -75188745 + Lx7 LINE L1 6812 7301 -395 2 940 342 0 0 0 chr11 46655127 46655165 -75188691 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 940 188 164 24 48 chr11 46655192 46655275 -75188581 + T-rich Low_complexity Low_complexity 3 83 0 2 940 244 273 0 0 chr11 46655292 46655347 -75188509 + GA-rich Low_complexity Low_complexity 2 56 0 2 940 243 0 0 0 chr11 46655945 46655972 -75187884 + (A)n Simple_repeat Simple_repeat 1 27 0 2 940 215 288 0 17 chr11 46656462 46656522 -75187334 + MIR3 SINE MIR 112 170 -38 3 940 252 0 0 0 chr11 46657135 46657163 -75186693 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 3 940 723 238 0 7 chr11 46657896 46658044 -75185812 + B1_Mur2 SINE Alu 3 149 0 3 940 904 211 14 32 chr11 46658232 46658382 -75185474 + Lx4B LINE L1 6847 6997 -61 3 940 324 0 0 0 chr11 46658382 46658418 -75185438 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 940 904 211 14 32 chr11 46658418 46658483 -75185373 + Lx4B LINE L1 6998 7057 -1 3 940 662 133 0 9 chr11 46658500 46658614 -75185242 + (GGAA)n Simple_repeat Simple_repeat 1 113 0 3 940 337 274 53 9 chr11 46659015 46659129 -75184727 + MER5A DNA MER1_type 31 149 -40 3 940 180 0 0 0 chr11 46659316 46659336 -75184520 + (T)n Simple_repeat Simple_repeat 1 20 0 3 940 360 123 0 0 chr11 46659645 46659702 -75184154 + ID4 SINE ID 4 60 -23 3 940 578 14 14 0 chr11 46659862 46659933 -75183923 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 940 1869 137 62 91 chr11 46660234 46660567 -75183289 + RLTR23 LTR ERV1 12 338 -92 3 940 1798 131 31 133 chr11 46660567 46661024 -75182832 + RMER17C LTR ERVK 1 410 0 3 940 1869 137 62 91 chr11 46661024 46661108 -75182748 + RLTR23 LTR ERV1 339 417 -13 3 940 198 303 29 39 chr11 46661113 46661216 -75182640 - MIR SINE MIR -58 150 49 3 940 457 277 9 0 chr11 46661247 46661359 -75182497 - ID_B1 SINE B4 -1 223 111 3 941 227 290 0 55 chr11 46662944 46663017 -75180839 + MER5A1 DNA MER1_type 62 130 -36 3 941 199 315 99 0 chr11 46663069 46663180 -75180676 - MER5B DNA MER1_type -30 148 27 3 941 527 287 101 34 chr11 46663391 46663658 -75180198 + B4A SINE B4 3 287 -5 3 941 213 175 0 0 chr11 46663725 46663765 -75180091 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 941 308 295 84 89 chr11 46664007 46664197 -75179659 - MLT1L LTR MaLR -224 386 198 3 941 873 76 0 0 chr11 46664452 46664570 -75179286 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 3 941 558 79 0 0 chr11 46664570 46664646 -75179210 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 3 941 183 156 0 0 chr11 46664645 46664677 -75179179 + T-rich Low_complexity Low_complexity 1 32 0 3 941 1835 144 35 3 chr11 46665176 46665490 -75178366 + RLTR17 LTR ERVK 369 692 0 3 941 211 267 83 0 chr11 46665530 46665590 -75178266 + ID4_ SINE ID 6 70 -13 3 941 352 286 73 112 chr11 46666031 46666263 -75177593 + B4 SINE B4 1 223 -69 3 941 225 259 19 0 chr11 46666323 46666377 -75177479 + B4 SINE B4 236 290 -2 3 941 186 43 0 0 chr11 46666526 46666549 -75177307 + (CTCTG)n Simple_repeat Simple_repeat 5 27 0 3 941 550 320 80 0 chr11 46667368 46667543 -75176313 - B3 SINE B2 -27 189 1 3 941 930 264 50 0 chr11 46667577 46667778 -75176078 - B3 SINE B2 -5 211 1 3 941 990 46 6 32 chr11 46667783 46667941 -75175915 + (TCTCC)n Simple_repeat Simple_repeat 2 155 0 3 941 456 19 0 0 chr11 46667941 46667994 -75175862 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 3 941 315 245 235 0 chr11 46668021 46668123 -75175733 + B1_Mus2 SINE Alu 1 126 -21 3 941 423 0 0 0 chr11 46668143 46668190 -75175666 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 941 262 234 31 0 chr11 46668206 46668270 -75175586 + L1M5 LINE L1 5502 5567 -673 3 941 651 271 112 41 chr11 46668283 46668381 -75175475 + L1MB8 LINE L1 5680 5773 -405 3 941 300 91 0 0 chr11 46668381 46668425 -75175431 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 941 651 271 112 41 chr11 46668425 46668764 -75175092 + L1MB8 LINE L1 5774 6147 -31 3 941 353 22 22 0 chr11 46669003 46669049 -75174807 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 941 185 111 56 0 chr11 46669126 46669162 -75174694 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 941 398 275 78 47 chr11 46669297 46669696 -75174160 + RMER15 LTR ERVL 1 558 -17 3 941 2994 138 39 95 chr11 46669790 46670350 -75173506 - RLTR24 LTR ERV1 0 529 1 3 941 207 0 0 0 chr11 46670642 46670665 -75173191 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 941 217 51 51 0 chr11 46670757 46670796 -75173060 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 3 941 239 280 111 20 chr11 46670949 46671102 -75172754 - L1M1 LINE L1 -462 5841 5675 3 941 709 264 6 47 chr11 46671128 46671299 -75172557 - RSINE1 SINE B4 0 165 2 3 941 504 337 12 18 chr11 46671335 46671501 -75172355 - RSINE1 SINE B4 0 165 1 3 941 1295 285 32 42 chr11 46671930 46672266 -75171590 + Lx8 LINE L1 7005 7331 -142 3 941 282 95 0 0 chr11 46672266 46672308 -75171548 + (TAA)n Simple_repeat Simple_repeat 3 44 0 3 941 1295 285 32 42 chr11 46672308 46672443 -75171413 + Lx8 LINE L1 7332 7471 -2 3 941 510 271 8 8 chr11 46672637 46672767 -75171089 - MER2B DNA MER2_type -23 313 184 3 941 393 308 15 8 chr11 46673767 46673901 -75169955 - MIR SINE MIR -10 252 118 3 941 211 371 19 0 chr11 46674063 46674168 -75169688 - MIR SINE MIR -77 185 79 3 941 285 109 0 0 chr11 46674620 46674666 -75169190 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 3 941 230 333 106 73 chr11 46674688 46674934 -75168922 - MamGypLTR1a LTR Gypsy -490 294 41 3 941 284 273 0 61 chr11 46675354 46675436 -75168420 - ID4 SINE ID -3 80 4 3 941 291 54 0 0 chr11 46675452 46675489 -75168367 + (T)n Simple_repeat Simple_repeat 1 37 0 3 941 1239 75 0 0 chr11 46675489 46675636 -75168220 - B1_Mus2 SINE Alu 0 147 1 3 941 216 0 0 0 chr11 46675988 46676012 -75167844 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 941 1179 155 129 5 chr11 46676341 46676542 -75167314 + URR1A DNA MER1_type 1 226 0 3 941 306 0 0 0 chr11 46676647 46676681 -75167175 + (ATG)n Simple_repeat Simple_repeat 1 34 0 3 941 225 0 0 0 chr11 46676681 46676706 -75167150 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 941 354 208 26 13 chr11 46677027 46677105 -75166751 - MER5A1 DNA MER1_type -35 131 53 3 941 333 0 0 0 chr11 46677768 46677805 -75166051 + (T)n Simple_repeat Simple_repeat 1 37 0 3 941 3424 36 15 3 chr11 46678654 46679045 -75164811 - MTA_Mm LTR MaLR 0 396 1 3 941 284 235 0 29 chr11 46679045 46679107 -75164749 + polypyrimidine Low_complexity Low_complexity 6 67 0 3 941 450 0 0 0 chr11 46679108 46679158 -75164698 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 3 941 870 278 81 57 chr11 46679183 46679515 -75164341 - ORR1E LTR MaLR -5 354 15 3 941 889 111 0 50 chr11 46679573 46679754 -75164102 + CT-rich Low_complexity Low_complexity 5 176 0 3 941 254 174 0 0 chr11 46679754 46679800 -75164056 + C-rich Low_complexity Low_complexity 4 49 0 3 941 405 0 0 0 chr11 46679807 46679852 -75164004 + (TCC)n Simple_repeat Simple_repeat 2 46 0 3 941 712 125 8 8 chr11 46680491 46680620 -75163236 + (GGGAGA)n Simple_repeat Simple_repeat 3 131 0 3 941 317 276 153 110 chr11 46680679 46680842 -75163014 - B4A SINE B4 -122 170 1 3 941 342 271 0 14 chr11 46681478 46681549 -75162307 + PB1D10 SINE Alu 9 78 -39 3 941 327 146 0 0 chr11 46681559 46681614 -75162242 + (GGA)n Simple_repeat Simple_repeat 2 56 0 3 941 330 45 0 0 chr11 46681818 46681862 -75161994 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 941 800 106 83 48 chr11 46682559 46682727 -75161129 + L1_Mus3 LINE L1 6465 6638 0 3 941 248 182 65 0 chr11 46682727 46682804 -75161052 + Lx9 LINE L1 7554 7635 -9 3 941 1229 82 0 0 chr11 46682926 46683073 -75160783 - B1_Mus1 SINE Alu 0 148 2 3 941 558 98 0 0 chr11 46683118 46683200 -75160656 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 941 765 0 0 0 chr11 46683200 46683285 -75160571 + (GAA)n Simple_repeat Simple_repeat 3 87 0 3 941 684 24 0 0 chr11 46684057 46684139 -75159717 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 3 941 640 214 14 40 chr11 46684143 46684299 -75159557 - B1_Mur2 SINE Alu -1 149 1 3 941 369 0 0 0 chr11 46684545 46684586 -75159270 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 941 450 0 0 0 chr11 46684586 46684635 -75159221 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 941 220 133 21 43 chr11 46684808 46684824 -75159032 + (TATATG)n Simple_repeat Simple_repeat 2 16 0 3 941 366 23 0 0 chr11 46684824 46684867 -75158989 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 941 220 133 21 43 chr11 46684867 46684897 -75158959 + (TATATG)n Simple_repeat Simple_repeat 1 31 0 3 941 238 247 24 94 chr11 46685126 46685211 -75158645 - MER58A DNA MER1_type 0 224 146 3 941 411 313 78 24 chr11 46685363 46685530 -75158326 - Tigger5 DNA MER2_type -2225 181 6 3 941 353 333 53 30 chr11 46685544 46685677 -75158179 - MER58A DNA MER1_type -88 136 1 3 941 227 79 30 45 chr11 46686221 46686287 -75157569 + T-rich Low_complexity Low_complexity 2 66 0 3 941 649 250 5 36 chr11 46687615 46687820 -75156036 - B4 SINE B4 -55 237 1 3 941 263 357 77 53 chr11 46688353 46688560 -75155296 + MIR SINE MIR 48 259 -3 3 941 859 245 75 10 chr11 46688657 46688952 -75154904 - ORR1D2 LTR MaLR -12 362 35 3 941 356 0 23 0 chr11 46689837 46689881 -75153975 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 941 509 0 16 0 chr11 46690706 46690767 -75153089 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 941 498 75 0 0 chr11 46691355 46691422 -75152434 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 941 646 253 6 11 chr11 46691735 46691911 -75151945 - L1MD3 LINE L1 -13 7982 7808 3 941 723 242 0 45 chr11 46691971 46692127 -75151729 - B1_Mur2 SINE Alu 0 149 1 3 941 940 250 25 148 chr11 46692234 46692666 -75151190 + MTE2a LTR MaLR 1 379 0 3 941 783 273 54 68 chr11 46692780 46693075 -75150781 - B4A SINE B4 0 292 2 3 941 602 191 73 44 chr11 46693142 46693279 -75150577 + B1_Mus2 SINE Alu 2 142 -5 3 941 221 0 35 0 chr11 46693280 46693309 -75150547 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 941 198 0 0 0 chr11 46693310 46693332 -75150524 + (CCA)n Simple_repeat Simple_repeat 1 22 0 3 941 549 274 8 40 chr11 46693350 46693526 -75150330 - B3 SINE B2 -24 174 2 4 941 517 213 28 9 chr11 46693530 46693639 -75150217 - ID_B1 SINE B4 0 224 114 4 941 371 289 67 0 chr11 46693652 46693742 -75150114 - RSINE1 SINE B4 -66 99 4 4 941 1257 48 0 13 chr11 46693797 46693946 -75149910 - B1_Mm SINE Alu 0 147 1 4 941 232 246 26 161 chr11 46694193 46694348 -75149508 + MT-int LTR MaLR 151 284 -814 4 941 8409 56 23 30 chr11 46694518 46695548 -75148308 + RLTR13D5 LTR ERVK 1 1023 0 4 941 189 0 0 0 chr11 46695910 46695931 -75147925 + (TTA)n Simple_repeat Simple_repeat 2 22 0 4 941 270 266 239 18 chr11 46696544 46696762 -75147094 - L1MC LINE L1 -2266 5616 5351 4 941 684 299 20 25 chr11 46697027 46697226 -75146630 - MTE2b LTR MaLR -61 318 121 4 941 414 0 0 0 chr11 46697227 46697273 -75146583 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 941 1510 45 0 0 chr11 46697432 46697610 -75146246 - L1_Mus3 LINE L1 -835 5803 5626 4 941 6363 69 65 10 chr11 46697610 46698434 -75145422 + L1_Mus3 LINE L1 5763 6632 -6 4 941 1375 79 10 10 chr11 46698738 46698930 -75144926 - MTA_Mm LTR MaLR 0 396 205 4 941 385 41 0 0 chr11 46698941 46698990 -75144866 + MTA_Mm LTR MaLR 359 407 0 4 941 9357 51 2 2 chr11 46698990 46700088 -75143768 + MTA_Mm-int LTR MaLR 1 1098 0 4 941 3469 39 18 0 chr11 46700088 46700477 -75143379 + MTA_Mm LTR MaLR 1 396 0 4 941 1316 201 127 4 chr11 46700653 46700928 -75142928 - ORR1D1 LTR MaLR -63 311 3 4 941 831 214 10 54 chr11 46701695 46701898 -75141958 - B2_Mm2 SINE B2 0 195 2 4 941 742 289 46 36 chr11 46702458 46702677 -75141179 - ID_B1 SINE B4 -2 222 2 4 941 234 0 0 0 chr11 46703356 46703382 -75140474 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 941 614 262 104 26 chr11 46703543 46703813 -75140043 - L1ME2z LINE L1 -539 5905 5615 4 941 243 103 0 0 chr11 46703937 46703976 -75139880 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 941 450 0 0 0 chr11 46703991 46704041 -75139815 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 941 348 318 30 53 chr11 46704155 46704288 -75139568 + MER5A1 DNA MER1_type 15 144 -22 4 941 522 0 0 0 chr11 46705114 46705172 -75138684 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 4 941 402 319 182 15 chr11 46705175 46705433 -75138423 - MLT1F2 LTR MaLR -20 634 287 4 941 609 318 13 0 chr11 46705816 46705967 -75137889 + RSINE1 SINE B4 9 161 -4 4 941 29 0 0 0 chr11 46705972 46706001 -75137855 + AT_rich Low_complexity Low_complexity 1 29 0 4 941 25 0 0 0 chr11 46706329 46706354 -75137502 + AT_rich Low_complexity Low_complexity 1 25 0 4 941 2091 114 52 78 chr11 46706643 46707011 -75136845 + Lx LINE L1 6283 6643 -11 4 941 1229 68 7 0 chr11 46707011 46707157 -75136699 + B1_Mm SINE Alu 1 147 0 4 941 2091 114 52 78 chr11 46707157 46707170 -75136686 + Lx LINE L1 6644 6654 0 4 941 318 87 0 0 chr11 46707457 46707503 -75136353 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 941 1510 39 84 0 chr11 46707666 46707684 -75136172 - B2_Mm1t SINE B2 0 193 176 4 941 180 0 0 0 chr11 46707684 46707704 -75136152 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 941 1510 39 84 0 chr11 46707704 46707863 -75135993 - B2_Mm1t SINE B2 -18 175 2 4 941 289 328 32 103 chr11 46707865 46707991 -75135865 - B4A SINE B4 -147 145 29 4 941 849 242 31 62 chr11 46708610 46708804 -75135052 - B3A SINE B2 -2 196 9 4 941 275 229 128 35 chr11 46709537 46709623 -75134233 + PB1D10 SINE Alu 23 116 -1 4 941 557 160 9 0 chr11 46709695 46709801 -75134055 + CT-rich Low_complexity Low_complexity 3 109 0 4 941 364 300 113 7 chr11 46710411 46710562 -75133294 + Charlie1a DNA MER1_type 75 241 -1214 4 941 1245 307 57 29 chr11 46710626 46711102 -75132754 + MER82 DNA MER2_type 2 490 -163 4 941 2090 128 0 71 chr11 46711208 46711560 -75132296 + ORR1A4 LTR MaLR 1 327 -2 4 941 249 57 0 0 chr11 46711561 46711596 -75132260 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 941 377 270 53 45 chr11 46711908 46712040 -75131816 + ID_B1 SINE B4 84 216 -8 4 941 27 49 0 0 chr11 46712040 46712081 -75131775 + AT_rich Low_complexity Low_complexity 1 41 0 4 941 1483 289 53 60 chr11 46712115 46712876 -75130980 + Charlie1a DNA MER1_type 650 1404 -51 4 941 998 268 9 0 chr11 46712886 46713099 -75130757 + B3 SINE B2 2 216 0 4 941 771 286 110 19 chr11 46713280 46713396 -75130460 + B4 SINE B4 1 117 -175 4 941 927 134 0 0 chr11 46713396 46713575 -75130281 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 941 771 286 110 19 chr11 46713575 46713722 -75130134 + B4 SINE B4 118 288 -4 4 941 237 295 24 49 chr11 46713920 46714002 -75129854 + L1MEg LINE L1 199 278 -5806 4 941 216 0 0 0 chr11 46714704 46714728 -75129128 + (T)n Simple_repeat Simple_repeat 1 24 0 4 941 1285 48 0 0 chr11 46714728 46714873 -75128983 - B1_Mus2 SINE Alu 0 147 3 4 941 961 166 0 7 chr11 46715919 46716059 -75127797 - B1_Mur4 SINE Alu -7 143 5 4 941 578 293 12 30 chr11 46716177 46716346 -75127510 - MER58A DNA MER1_type -15 209 44 4 941 295 262 0 15 chr11 46716720 46716786 -75127070 - RMER30 DNA MER1_type -128 74 10 4 941 8041 40 13 0 chr11 46716802 46717880 -75125976 - L1Md_F3 LINE L1 0 6584 5618 4 941 472 301 69 51 chr11 46717922 46718097 -75125759 - B3A SINE B2 -16 182 5 4 941 36882 32 2 7 chr11 46718376 46724757 -75119099 - L1Md_T LINE L1 -1 6581 231 4 941 321 335 86 75 chr11 46724758 46725066 -75118790 - MLT1A LTR MaLR -12 353 44 4 941 359 182 0 13 chr11 46725072 46725150 -75118706 + CT-rich Low_complexity Low_complexity 3 79 0 4 941 217 88 0 0 chr11 46725170 46725204 -75118652 - B3A SINE B2 -163 35 2 4 941 275 0 29 0 chr11 46725439 46725474 -75118382 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 941 388 256 78 49 chr11 46725476 46725681 -75118175 - L1M3 LINE L1 -2121 4019 3809 4 941 312 261 26 17 chr11 46725982 46726099 -75117757 - L1M3 LINE L1 -3305 2838 2721 4 941 200 366 85 0 chr11 46726923 46727005 -75116851 + MIR3 SINE MIR 93 181 -27 4 941 740 291 129 103 chr11 46727242 46727591 -75116265 - MTE2b LTR MaLR -13 366 9 4 941 316 206 160 21 chr11 46727796 46727829 -75116027 + B4 SINE B4 38 144 -148 4 941 392 43 0 5 chr11 46727829 46727890 -75115966 + B1F1 SINE Alu 1 59 -88 4 941 253 186 99 81 chr11 46727928 46728039 -75115817 + RLTR25B LTR ERVK 397 509 -519 4 941 788 29 9 37 chr11 46727972 46728081 -75115775 + B1_Mm SINE Alu 42 147 0 4 941 210 143 0 0 chr11 46728084 46728119 -75115737 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 941 1836 133 69 21 chr11 46728249 46728438 -75115418 - RMER17C LTR ERVK 0 410 217 4 941 503 31 15 0 chr11 46728438 46728503 -75115353 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 941 1836 143 63 25 chr11 46728503 46728739 -75115117 - RMER17C LTR ERVK -551 407 17 4 941 3198 176 28 18 chr11 46729393 46729959 -75113897 - RLTR20B3 LTR ERVK 0 577 6 4 941 548 268 46 26 chr11 46730339 46730492 -75113364 + RSINE1 SINE B4 2 157 -8 4 941 245 341 47 16 chr11 46730787 46730915 -75112941 + L2 LINE L2 2820 2951 -468 4 941 231 245 0 0 chr11 46731364 46731458 -75112398 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 941 1361 238 39 130 chr11 46732527 46732942 -75110914 - MTEb LTR MaLR -2 377 1 4 941 352 42 0 20 chr11 46733606 46733655 -75110201 - L1_Mus1 LINE L1 -137 6430 6383 4 941 227 261 10 93 chr11 46734217 46734314 -75109542 - RMER15 LTR ERVL -147 428 340 4 941 1623 242 42 3 chr11 46735021 46735381 -75108475 + MTEa LTR MaLR 6 379 0 4 941 184 266 140 60 chr11 46735517 46735617 -75108239 + L3 LINE CR1 2142 2249 -2240 4 941 255 310 70 0 chr11 46735657 46735757 -75108099 + L3b LINE CR1 236 342 -140 4 941 3851 70 2 4 chr11 46735939 46736444 -75107412 - L1_Mus2 LINE L1 0 6566 6063 4 941 624 326 80 0 chr11 46736462 46736649 -75107207 - ID_B1 SINE B4 -21 203 2 4 941 3904 30 0 4 chr11 46736895 46737361 -75106495 - L1Md_F3 LINE L1 -2 6582 6119 4 941 396 271 0 0 chr11 46737983 46738068 -75105788 - MT2A LTR ERVL -107 426 342 4 941 21 0 0 0 chr11 46738080 46738101 -75105755 + AT_rich Low_complexity Low_complexity 1 21 0 4 941 1202 253 73 0 chr11 46738112 46738132 -75105724 - ORR1D2 LTR MaLR -43 327 305 4 941 543 31 0 0 chr11 46738132 46738197 -75105659 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 941 1202 253 73 0 chr11 46738197 46738476 -75105380 - ORR1D2 LTR MaLR -66 304 7 4 941 207 267 120 36 chr11 46738563 46738730 -75105126 - L2a LINE L2 -46 3380 3200 4 941 258 295 9 18 chr11 46739006 46739120 -75104736 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 941 1756 145 0 0 chr11 46739581 46739884 -75103972 + Lx2 LINE L1 6634 6936 -61 4 941 36 23 0 0 chr11 46739884 46739927 -75103929 + AT_rich Low_complexity Low_complexity 1 43 0 4 941 488 318 71 146 chr11 46740278 46740628 -75103228 - MLT1D LTR MaLR -33 472 149 4 941 1662 239 15 27 chr11 46740633 46741037 -75102819 + MTC LTR MaLR 18 416 -5 4 941 303 353 70 61 chr11 46740977 46741191 -75102665 - MLT1D LTR MaLR -289 216 1 4 941 382 230 0 0 chr11 46741575 46741649 -75102207 + ID4_ SINE ID 2 75 -8 4 941 386 307 63 59 chr11 46742235 46742505 -75101351 - B4 SINE B4 -17 275 5 4 941 30 0 0 0 chr11 46742533 46742563 -75101293 + AT_rich Low_complexity Low_complexity 1 30 0 4 941 765 223 68 15 chr11 46742835 46743040 -75100816 - MTEb LTR MaLR 0 379 164 4 941 940 320 17 11 chr11 46743119 46743406 -75100450 - B4A SINE B4 -3 289 1 4 941 691 286 41 6 chr11 46743409 46743578 -75100278 - MTEb LTR MaLR -204 175 1 4 941 649 226 174 0 chr11 46744133 46744288 -75099568 - B3A SINE B2 -16 182 1 4 941 260 236 18 0 chr11 46744505 46744560 -75099296 + RSINE1 SINE B4 93 148 -17 4 941 6935 176 38 25 chr11 46744776 46746620 -75097236 - Lx5 LINE L1 0 7050 5182 4 941 14609 158 23 23 chr11 46746617 46748802 -75095054 - Lx5 LINE L1 -1613 4264 2054 4 941 219 114 0 0 chr11 46748802 46748837 -75095019 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 941 14609 156 87 24 chr11 46748837 46749959 -75093897 - Lx5 LINE L1 -3824 2053 889 4 941 296 279 209 0 chr11 46750475 46750561 -75093295 - PB1D10 SINE Alu -13 104 1 5 941 900 158 11 0 chr11 46750580 46750764 -75093092 + L1_Mur3 LINE L1 2816 3001 -2879 5 941 2555 193 19 66 chr11 46750766 46751339 -75092517 - Lx5 LINE L1 -470 6580 6035 5 941 923 195 51 110 chr11 46751379 46751739 -75092117 + Lx7 LINE L1 7091 7654 -42 5 941 434 200 0 43 chr11 46751808 46751923 -75091933 - Lx9 LINE L1 -7 7637 7528 5 941 389 81 0 16 chr11 46751937 46752000 -75091856 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 941 272 173 39 0 chr11 46752000 46752052 -75091804 - Lx9 LINE L1 -187 7457 7404 5 941 207 69 0 0 chr11 46752438 46752467 -75091389 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 5 941 252 0 0 0 chr11 46752484 46752512 -75091344 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 941 650 228 0 0 chr11 46752512 46752635 -75091221 - RSINE1 SINE B4 -41 124 2 5 941 710 264 110 44 chr11 46754638 46754911 -75088945 - B4A SINE B4 0 292 2 5 941 24 32 0 0 chr11 46755164 46755195 -75088661 + AT_rich Low_complexity Low_complexity 1 31 0 5 941 228 35 0 0 chr11 46755246 46755275 -75088581 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 941 1249 282 53 23 chr11 46755280 46755715 -75088141 - Lx8 LINE L1 -149 7324 6877 5 941 617 237 206 8 chr11 46756264 46756511 -75087345 + MER110A LTR ERV1 85 380 -88 5 941 185 184 41 0 chr11 46757205 46757254 -75086602 + CT-rich Low_complexity Low_complexity 1 51 0 5 941 678 255 130 0 chr11 46757528 46757689 -75086167 - B3 SINE B2 -14 202 21 5 941 360 0 0 0 chr11 46758138 46758178 -75085678 + (T)n Simple_repeat Simple_repeat 1 40 0 5 941 350 269 51 51 chr11 46758194 46758392 -75085464 - L1M5 LINE L1 -3409 2737 2539 5 941 276 312 117 0 chr11 46758731 46758808 -75085048 - PB1D9 SINE Alu -8 112 27 5 941 1223 82 58 0 chr11 46758829 46759000 -75084856 - B2_Mm2 SINE B2 -14 181 1 5 941 290 248 26 10 chr11 46759071 46759149 -75084707 - B4 SINE B4 -90 134 52 5 941 1532 218 123 8 chr11 46759775 46760150 -75083706 - MTC LTR MaLR -3 418 1 5 941 2513 284 172 23 chr11 46760433 46761543 -75082313 - Lx8 LINE L1 -9 7464 6190 5 941 969 302 126 15 chr11 46761595 46762397 -75081459 - L1M2 LINE L1 -509 5371 4481 5 941 705 278 48 18 chr11 46762408 46762723 -75081133 - L1M2 LINE L1 -1574 4306 4005 5 941 402 21 0 0 chr11 46763075 46763122 -75080734 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 941 2005 156 48 3 chr11 46763362 46763716 -75080140 + ORR1D1 LTR MaLR 5 374 0 5 941 230 295 79 11 chr11 46764771 46764860 -75078996 + L2b LINE L2 3052 3146 -229 5 941 237 322 88 36 chr11 46765252 46765526 -75078330 - L1ME1 LINE L1 -11 6168 5881 5 941 264 357 39 95 chr11 46765684 46765990 -75077866 + RMER10A LTR ERVL 18 306 -136 5 941 456 291 102 21 chr11 46766046 46766186 -75077670 + B3 SINE B2 13 162 -54 5 941 441 0 0 0 chr11 46766186 46766235 -75077621 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 941 392 275 61 61 chr11 46766235 46766258 -75077598 + B2_Mm2 SINE B2 150 173 -22 5 941 288 290 27 27 chr11 46766885 46766995 -75076861 + MamRep564 Unknown Unknown 98 207 -150 5 941 225 119 0 0 chr11 46768531 46768573 -75075283 + (TAG)n Simple_repeat Simple_repeat 2 43 0 5 941 881 201 171 17 chr11 46768708 46768813 -75075043 - Lx9 LINE L1 -7 7637 7487 5 941 408 40 0 0 chr11 46768813 46768863 -75074993 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 941 524 15 15 0 chr11 46768866 46768931 -75074925 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 941 881 201 171 17 chr11 46768931 46769165 -75074691 - Lx9 LINE L1 -158 7486 7248 5 941 576 143 0 0 chr11 46769182 46769280 -75074576 + (T)n Simple_repeat Simple_repeat 1 98 0 5 941 817 121 21 0 chr11 46769273 46769414 -75074442 + (TTCCC)n Simple_repeat Simple_repeat 2 145 0 5 941 468 0 0 0 chr11 46769414 46769466 -75074390 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 5 941 240 228 0 0 chr11 46769466 46769523 -75074333 + T-rich Low_complexity Low_complexity 1 57 0 5 941 633 326 29 25 chr11 46769690 46769964 -75073892 + B4A SINE B4 4 278 -14 5 941 423 0 0 0 chr11 46770170 46770217 -75073639 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 941 28 48 0 0 chr11 46770680 46770722 -75073134 + AT_rich Low_complexity Low_complexity 1 42 0 5 941 719 257 124 57 chr11 46770740 46770919 -75072937 + MLT1A0 LTR MaLR 13 184 -181 5 941 4767 44 0 0 chr11 46770919 46771492 -75072364 - L1Md_T LINE L1 0 6582 6010 5 941 719 164 75 68 chr11 46771492 46771647 -75072209 + MLT1A0 LTR MaLR 185 404 -4 5 941 34437 62 2 5 chr11 46771740 46777703 -75066153 - L1Md_F3 LINE L1 -16 6568 631 5 941 1042 292 59 16 chr11 46778744 46779047 -75064809 + MTE2b LTR MaLR 59 374 -5 5 941 683 239 22 0 chr11 46779166 46779304 -75064552 - ID_B1 SINE B4 -5 219 79 5 941 279 0 0 0 chr11 46779574 46779605 -75064251 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 941 559 284 128 0 chr11 46779607 46779755 -75064101 - B3A SINE B2 -30 168 2 5 941 352 252 34 120 chr11 46779853 46779941 -75063915 + B1F1 SINE Alu 10 90 -59 5 941 668 81 20 0 chr11 46779941 46780040 -75063816 + (TATTG)n Simple_repeat Simple_repeat 2 102 0 5 941 2573 93 13 16 chr11 46780040 46780423 -75063433 - L1_Mus3 LINE L1 -12 6626 6245 5 941 341 252 34 120 chr11 46780423 46780450 -75063406 + PB1D10 SINE Alu 88 115 -2 5 941 678 25 0 0 chr11 46780480 46780560 -75063296 + (CAAAG)n Simple_repeat Simple_repeat 5 84 0 5 941 414 0 0 0 chr11 46781501 46781547 -75062309 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 941 1149 78 0 13 chr11 46781548 46781703 -75062153 - B2_Mm2 SINE B2 -41 154 2 5 941 456 293 17 17 chr11 46782012 46782130 -75061726 - PB1D9 SINE Alu -1 119 2 5 941 205 286 23 23 chr11 46782377 46782463 -75061393 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 5 941 24 0 0 0 chr11 46784590 46784614 -75059242 + AT_rich Low_complexity Low_complexity 1 24 0 5 941 218 146 0 40 chr11 46784804 46784854 -75059002 + A-rich Low_complexity Low_complexity 2 49 0 5 941 519 17 0 0 chr11 46786019 46786079 -75057777 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 941 234 359 106 56 chr11 46786412 46786592 -75057264 + MIRb SINE MIR 50 238 -30 5 941 230 231 76 15 chr11 46789216 46789282 -75054574 - MER58B DNA MER1_type 0 341 272 5 941 293 205 256 0 chr11 46792188 46792266 -75051590 - PB1D7 SINE Alu -3 117 20 5 941 264 91 0 0 chr11 46792565 46792609 -75051247 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 941 228 156 22 0 chr11 46792610 46792655 -75051201 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 942 198 0 0 0 chr11 46793560 46793582 -75050274 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 942 260 286 38 67 chr11 46794864 46794969 -75048887 + B3A SINE B2 3 104 -94 5 942 1905 22 0 0 chr11 46794969 46795196 -75048660 + L1Md_F2 LINE L1 5360 5586 -297 5 942 7392 74 11 4 chr11 46795196 46796185 -75047671 + L1Md_F2 LINE L1 5587 6582 0 5 942 199 313 48 12 chr11 46796932 46797016 -75046840 + MIRm SINE MIR 107 193 -83 5 942 242 250 0 19 chr11 46797044 46797097 -75046759 - MER46C DNA MER2_type -15 323 272 5 942 7816 41 5 2 chr11 46799300 46800956 -75042900 - L1Md_F3 LINE L1 -14 6570 4913 5 942 360 0 0 0 chr11 46801608 46801648 -75042208 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 942 243 0 0 0 chr11 46801648 46801674 -75042182 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 942 630 180 0 0 chr11 46802509 46802609 -75041247 - B1_Mur1 SINE Alu 0 149 50 5 942 954 336 33 0 chr11 46802937 46803211 -75040645 - B4A SINE B4 -7 285 3 5 942 395 282 111 5 chr11 46803458 46803668 -75040188 - L1ME2 LINE L1 -315 5864 5643 5 942 629 343 118 68 chr11 46803711 46804110 -75039746 + MLT1F2 LTR MaLR 3 428 -132 5 942 2719 76 0 3 chr11 46804110 46804468 -75039388 + L1_Mus1 LINE L1 6211 6567 0 5 942 629 343 118 68 chr11 46804468 46804568 -75039288 + MLT1F2 LTR MaLR 429 527 -33 5 942 316 167 0 18 chr11 46804872 46804927 -75038929 - B4A SINE B4 -238 54 1 5 942 417 341 82 47 chr11 46805089 46805514 -75038342 - L1MEd LINE L1 -5064 1055 616 5 942 269 347 114 53 chr11 46806407 46806538 -75037318 - MLT2F LTR ERVL -312 351 213 5 942 402 239 17 76 chr11 46806919 46807037 -75036819 - B2_Mm2 SINE B2 -80 115 5 5 942 235 300 12 12 chr11 46807468 46807549 -75036307 - ID4_ SINE ID 0 83 3 5 942 285 304 0 57 chr11 46807879 46808001 -75035855 + Lx6 LINE L1 7303 7417 -43 5 942 1346 195 192 13 chr11 46808132 46808434 -75035422 + MTC LTR MaLR 1 356 -65 5 942 1116 91 0 7 chr11 46808460 46808615 -75035241 + B2_Mm2 SINE B2 1 154 -41 5 942 468 91 0 0 chr11 46808712 46808778 -75035078 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 942 707 313 59 69 chr11 46808838 46809282 -75034574 + MLT2B4 LTR ERVL 14 459 -5 5 942 195 331 54 39 chr11 46809332 46809461 -75034395 - L2 LINE L2 -844 2575 2445 5 942 219 36 0 0 chr11 46809473 46809501 -75034355 + (T)n Simple_repeat Simple_repeat 1 28 0 5 942 188 222 254 0 chr11 46810618 46810681 -75033175 + MER5B DNA MER1_type 60 138 -40 5 942 186 43 0 0 chr11 46811310 46811333 -75032523 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 942 1207 61 0 0 chr11 46813480 46813627 -75030229 - B1_Mm SINE Alu 0 147 1 5 942 294 29 0 0 chr11 46813743 46813778 -75030078 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 942 549 0 0 0 chr11 46814173 46814234 -75029622 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 942 181 284 63 63 chr11 46814621 46814700 -75029156 - MIRc SINE MIR -164 104 26 5 942 219 114 0 0 chr11 46815690 46815725 -75028131 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 942 201 121 0 0 chr11 46815726 46815759 -75028097 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 942 200 210 158 18 chr11 46817268 46817361 -75026495 + MIRc SINE MIR 86 187 -21 6 942 310 311 57 0 chr11 46817407 46817513 -75026343 - Tigger7 DNA MER2_type -1 2490 2379 6 942 453 268 124 49 chr11 46817583 46817862 -75025994 + MER31B LTR ERV1 5 381 -104 6 942 281 336 37 18 chr11 46817951 46818086 -75025770 - MIR SINE MIR -102 174 29 6 942 642 60 0 0 chr11 46818087 46818170 -75025686 + (TTTC)n Simple_repeat Simple_repeat 1 83 0 6 942 201 74 0 0 chr11 46820075 46820102 -75023754 + (CCA)n Simple_repeat Simple_repeat 1 27 0 6 942 488 304 66 59 chr11 46820536 46820809 -75023047 - B4 SINE B4 -17 275 1 6 942 800 252 29 0 chr11 46821774 46821984 -75021872 - B3 SINE B2 0 216 1 6 942 243 357 41 0 chr11 46822236 46822334 -75021522 + L3 LINE CR1 4379 4480 -9 6 942 184 340 49 56 chr11 46823575 46823737 -75020119 + L2 LINE L2 2590 2750 -669 6 942 214 179 26 0 chr11 46823931 46823970 -75019886 + CT-rich Low_complexity Low_complexity 3 42 0 6 942 3109 41 0 0 chr11 46824085 46824479 -75019377 - L1_Mus1 LINE L1 -556 6011 5618 6 942 301 298 20 79 chr11 46824492 46824815 -75019041 + BGLII_B LTR ERVK 141 423 -18 6 942 219 138 51 17 chr11 46824832 46824891 -75018965 + CT-rich Low_complexity Low_complexity 6 66 0 6 942 231 319 0 28 chr11 46824907 46824978 -75018878 - ID4 SINE ID -10 73 5 6 942 756 256 49 29 chr11 46826054 46826259 -75017597 - ORR1E LTR MaLR -48 311 103 6 942 712 254 103 38 chr11 46826274 46826518 -75017338 + MLT2D LTR ERVL 43 297 -117 6 942 216 373 42 17 chr11 46827770 46827890 -75015966 - MIRm SINE MIR -127 149 27 6 942 548 373 36 45 chr11 46828288 46828619 -75015237 - MER74A LTR ERVL -85 473 146 6 942 846 98 0 0 chr11 46829168 46829290 -75014566 + (GA)n Simple_repeat Simple_repeat 2 123 0 6 942 291 243 28 14 chr11 46830027 46830098 -75013758 - MIR SINE MIR -81 181 110 6 942 2662 55 26 14 chr11 46830335 46830684 -75013172 + IAPEY2_LTR LTR ERVK 5 357 0 6 942 254 325 0 58 chr11 46831098 46831219 -75012637 - MIRb SINE MIR -23 245 132 6 942 185 250 0 40 chr11 46831356 46831406 -75012450 + L2b LINE L2 3328 3375 0 6 942 392 228 78 166 chr11 46832178 46832338 -75011518 + MER82 DNA MER2_type 8 149 -504 6 942 513 268 35 90 chr11 46832338 46832539 -75011317 - B3A SINE B2 -6 192 3 6 942 392 228 78 166 chr11 46832539 46832583 -75011273 + MER82 DNA MER2_type 150 194 -459 6 942 189 196 0 0 chr11 46832593 46832644 -75011212 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 942 1680 232 55 5 chr11 46832709 46833094 -75010762 + MTD LTR MaLR 1 404 -15 6 942 411 285 88 77 chr11 46834995 46835080 -75008776 + MER34A1 LTR ERV1 94 176 -395 6 942 703 92 8 0 chr11 46835080 46835199 -75008657 + L1Md_F2 LINE L1 6463 6582 0 6 942 496 246 43 69 chr11 46835199 46835387 -75008469 + MER34A1 LTR ERV1 195 377 -210 6 942 338 333 42 63 chr11 46835854 46836104 -75007752 + MLT1A LTR MaLR 1 233 -132 6 942 342 0 0 0 chr11 46836104 46836142 -75007714 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 942 306 0 0 0 chr11 46836142 46836175 -75007681 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 942 288 361 70 106 chr11 46836175 46836282 -75007574 + MLT1A LTR MaLR 234 345 -20 6 942 645 250 0 0 chr11 46836939 46837075 -75006781 + B1F SINE Alu 2 137 -12 6 942 231 297 13 13 chr11 46837450 46837525 -75006331 + MTEa LTR MaLR 290 364 -15 6 942 627 232 42 14 chr11 46837799 46837943 -75005913 - B1F SINE Alu -1 148 1 6 942 385 277 39 80 chr11 46838941 46839138 -75004718 - B3 SINE B2 -6 210 3 6 942 1145 206 102 13 chr11 46839372 46839686 -75004170 + Lx3C LINE L1 6632 6973 -3 6 942 1668 79 0 0 chr11 46839839 46840067 -75003789 - L1_Mus4 LINE L1 -453 6183 5956 6 942 21 36 0 0 chr11 46840087 46840115 -75003741 + AT_rich Low_complexity Low_complexity 1 28 0 6 942 1778 40 0 4 chr11 46840117 46840345 -75003511 - L1_Mus1 LINE L1 -2 6565 6339 6 942 1700 59 8 48 chr11 46840343 46840500 -75003356 - Lx LINE L1 -827 5827 5672 6 942 1213 48 7 0 chr11 46840500 46840646 -75003210 + B1_Mm SINE Alu 1 147 0 6 942 279 0 0 0 chr11 46840648 46840679 -75003177 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 942 1700 59 8 48 chr11 46840679 46840768 -75003088 - Lx LINE L1 -983 5671 5588 6 942 2277 127 136 2 chr11 46840776 46841017 -75002839 + Lx LINE L1 6168 6442 -212 6 942 486 0 0 0 chr11 46841017 46841071 -75002785 + (GGAGA)n Simple_repeat Simple_repeat 4 57 0 6 942 2277 127 136 2 chr11 46841071 46841256 -75002600 + Lx LINE L1 6443 6649 -5 6 942 583 363 55 60 chr11 46842663 46842869 -75000987 - LTR40a LTR ERVL -69 450 244 6 942 293 299 0 13 chr11 46842869 46842947 -75000909 - ID4 SINE ID -6 77 1 6 942 583 363 55 60 chr11 46842947 46843174 -75000682 - LTR40a LTR ERVL -276 243 19 6 942 296 344 160 25 chr11 46844413 46844943 -74998913 - L2 LINE L2 -731 2688 2087 6 942 180 0 0 0 chr11 46844967 46844987 -74998869 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 6 942 364 306 71 0 chr11 46845010 46845108 -74998748 + PB1D10 SINE Alu 6 110 -7 6 942 184 54 26 51 chr11 46845128 46845167 -74998689 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 6 942 624 310 29 5 chr11 46845226 46845430 -74998426 + B3 SINE B2 2 210 -6 6 942 553 336 107 61 chr11 46845695 46846256 -74997600 - L2 LINE L2 -1445 1974 1388 6 942 846 189 81 123 chr11 46846303 46846538 -74997318 - URR1B DNA MER1_type 0 225 1 6 942 21 57 0 0 chr11 46847570 46847605 -74996251 + AT_rich Low_complexity Low_complexity 1 35 0 6 942 998 205 4 111 chr11 46848537 46848789 -74995067 - URR1B DNA MER1_type 0 225 1 6 942 324 82 0 47 chr11 46848872 46848936 -74994920 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 942 180 258 136 61 chr11 46849639 46849771 -74994085 - MIR3 SINE MIR -62 146 5 6 942 229 382 36 48 chr11 46849810 46849975 -74993881 + L3 LINE CR1 4320 4482 -7 6 942 615 305 70 15 chr11 46850558 46850831 -74993025 - B4A SINE B4 -4 288 1 6 942 405 214 0 0 chr11 46850893 46850996 -74992860 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 6 942 222 323 0 31 chr11 46851006 46851102 -74992754 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 6 942 351 271 156 7 chr11 46851547 46851688 -74992168 - L1MB8 LINE L1 -13 6165 6004 6 942 1046 161 16 31 chr11 46852436 46852628 -74991228 - B2_Mm2 SINE B2 -6 189 1 6 942 188 86 0 28 chr11 46852977 46853013 -74990843 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6 942 270 231 35 53 chr11 46853015 46853129 -74990727 - Lx5 LINE L1 0 7050 6939 6 942 7547 62 0 6 chr11 46853659 46854901 -74988955 + L1_Mus1 LINE L1 5332 6566 -1 6 942 194 91 30 0 chr11 46854908 46854941 -74988915 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 6 942 217 132 0 0 chr11 46855174 46855212 -74988644 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 6 942 210 37 0 0 chr11 46855246 46855273 -74988583 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 942 357 321 54 18 chr11 46855435 46855603 -74988253 + MER58A DNA MER1_type 50 223 -1 6 942 1013 150 0 6 chr11 46855684 46855865 -74987991 + GA-rich Low_complexity Low_complexity 1 180 0 6 942 227 321 23 35 chr11 46855918 46856005 -74987851 - MLT2D LTR ERVL -48 511 426 6 942 361 284 25 41 chr11 46856101 46856222 -74987634 - MLT2D LTR ERVL -288 126 8 6 942 664 296 158 24 chr11 46857987 46858240 -74985616 + MTEa LTR MaLR 91 377 -2 6 942 873 248 25 0 chr11 46858242 46858440 -74985416 + MTEa-int LTR MaLR 1 203 -1377 6 942 335 318 0 9 chr11 46858443 46858554 -74985302 + CT-rich Low_complexity Low_complexity 4 113 0 6 942 810 300 93 43 chr11 46858852 46859176 -74984680 + MER58B DNA MER1_type 1 340 -1 6 942 282 393 34 51 chr11 46859385 46859503 -74984353 + PB1 SINE Alu 1 116 -11 6 942 500 306 89 21 chr11 46859657 46859847 -74984009 + MIR SINE MIR 18 220 -42 6 942 29 0 0 0 chr11 46860793 46860822 -74983034 + AT_rich Low_complexity Low_complexity 1 29 0 6 942 946 246 117 31 chr11 46862326 46862616 -74981240 - ORR1E LTR MaLR -2 357 43 6 942 224 343 40 40 chr11 46863628 46863777 -74980079 + MIRb SINE MIR 2 150 -118 6 942 1193 294 47 15 chr11 46864860 46865202 -74978654 + MTE2a LTR MaLR 3 355 -24 6 942 996 184 4 81 chr11 46865372 46865620 -74978236 - RLTR11B LTR ERVK -224 229 1 6 942 424 314 8 55 chr11 46865813 46865941 -74977915 + B1_Mur3 SINE Alu 18 139 -10 6 942 7617 43 1 5 chr11 46865961 46867422 -74976434 - L1Md_F2 LINE L1 -9 6573 5123 6 942 8951 73 0 1 chr11 46867422 46868653 -74975203 + L1_Mm LINE L1 4002 5231 -652 6 942 3633 214 62 30 chr11 46868662 46869869 -74973987 + MYSERV6-int LTR ERVK 7813 8905 -54 6 942 1865 189 61 28 chr11 46869881 46870349 -74973507 + RLTR11A2 LTR ERVK 1 512 -15 6 942 498 276 41 14 chr11 46872459 46872679 -74971177 + L1MA5 LINE L1 6075 6300 0 6 942 7769 71 6 1 chr11 46873475 46874588 -74969268 - L1_Mus3 LINE L1 -4 6634 5516 6 942 267 108 60 30 chr11 46874582 46874649 -74969207 - L1_Mur2 LINE L1 -563 5314 5246 6 942 269 374 35 21 chr11 46875262 46875404 -74968452 + MIR3 SINE MIR 33 176 -32 6 942 254 338 22 104 chr11 46875656 46875887 -74967969 + LTR85a LTR Gypsy? 25 236 -466 6 942 281 82 20 0 chr11 46876240 46876289 -74967567 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 942 611 255 7 0 chr11 46876301 46876442 -74967414 + Lx8 LINE L1 6341 6482 -991 6 942 346 294 10 0 chr11 46876473 46876575 -74967281 - Lx8 LINE L1 -194 7279 7177 6 942 281 26 26 0 chr11 46876637 46876675 -74967181 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 942 229 348 67 55 chr11 46877946 46878110 -74965746 + MER5B DNA MER1_type 6 171 -7 6 942 2295 207 56 45 chr11 46878573 46879180 -74964676 + RLTR18 LTR ERVK 3 616 0 6 942 284 365 71 28 chr11 46879376 46879517 -74964339 + L2b LINE L2 3229 3375 0 6 942 2246 146 35 64 chr11 46879685 46880140 -74963716 + RMER10A LTR ERVL 1 442 0 7 942 240 147 0 0 chr11 46880292 46880326 -74963530 - RMER10A LTR ERVL -408 34 1 7 942 496 259 0 8 chr11 46880576 46880693 -74963163 + PB1D10 SINE Alu 2 117 0 7 942 249 214 69 28 chr11 46881227 46881299 -74962557 - PB1D10 SINE Alu -21 96 22 7 942 347 351 21 86 chr11 46882066 46882253 -74961603 + ID_B1 SINE B4 2 176 -48 7 942 339 272 0 80 chr11 46882164 46882276 -74961580 + PB1D10 SINE Alu 14 116 -1 7 942 25 51 0 0 chr11 46882718 46882757 -74961099 + AT_rich Low_complexity Low_complexity 1 39 0 7 942 217 353 130 26 chr11 46884330 46884484 -74959372 - L2b LINE L2 -232 3143 2974 7 942 2003 29 8 4 chr11 46884946 46885189 -74958667 - L1Md_F3 LINE L1 -1 6583 6340 7 942 2625 227 33 35 chr11 46885315 46885644 -74958212 - Lx6 LINE L1 -4 7456 7127 7 942 1236 48 0 0 chr11 46885644 46885791 -74958065 + B1_Mm SINE Alu 1 147 0 7 942 2625 227 33 35 chr11 46885791 46886064 -74957792 - Lx6 LINE L1 -334 7126 6855 7 942 933 180 0 3 chr11 46886354 46886680 -74957176 + (TG)n Simple_repeat Simple_repeat 1 324 0 7 942 583 243 48 80 chr11 46886680 46886868 -74956988 - B3A SINE B2 -16 182 1 7 942 262 317 101 12 chr11 46888108 46888277 -74955579 - LTR81B LTR ERV1? -25 1368 1185 7 942 3915 68 52 4 chr11 46888957 46889442 -74954414 - L1_Mus1 LINE L1 0 6567 6060 7 942 522 287 29 0 chr11 46889754 46889890 -74953966 - B1F2 SINE Alu -9 140 1 7 942 333 62 0 0 chr11 46891179 46891227 -74952629 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 942 1389 250 71 46 chr11 46892812 46893206 -74950650 + MTD LTR MaLR 1 404 -15 7 942 1256 122 37 5 chr11 46893323 46893512 -74950344 - B2_Mm2 SINE B2 0 195 1 7 942 381 315 62 46 chr11 46893801 46894107 -74949749 - L1MA6 LINE L1 -79 6221 5911 7 942 2190 57 30 20 chr11 46894121 46894425 -74949431 - IAPLTR2b LTR ERVK -20 307 1 7 942 308 216 102 10 chr11 46894430 46894528 -74949328 - L1MB3 LINE L1 -269 5914 5808 7 942 304 250 28 28 chr11 46894950 46895057 -74948799 - L1MA6 LINE L1 -524 5788 5682 7 942 21 0 0 0 chr11 46896600 46896621 -74947235 + AT_rich Low_complexity Low_complexity 1 21 0 7 942 1240 76 99 6 chr11 46896785 46896956 -74946900 - L1Md_F2 LINE L1 -10 6572 6386 7 942 21 57 0 0 chr11 46897583 46897618 -74946238 + AT_rich Low_complexity Low_complexity 1 35 0 7 942 278 309 45 68 chr11 46897949 46898081 -74945775 - B1F2 SINE Alu -10 139 11 7 942 851 306 15 0 chr11 46897972 46898171 -74945685 - B4A SINE B4 -87 205 4 7 942 367 322 112 50 chr11 46898554 46898714 -74945142 - MTEa LTR MaLR -161 218 49 7 942 2417 139 27 71 chr11 46899520 46899968 -74943888 + RLTR23 LTR ERV1 1 428 -2 7 942 339 311 55 101 chr11 46900652 46900870 -74942986 + ORR1E LTR MaLR 1 208 -151 7 942 587 142 98 16 chr11 46900979 46901101 -74942755 - L1_Mus1 LINE L1 -587 5980 5849 7 942 5539 58 9 18 chr11 46901101 46901782 -74942074 + L1_Mus1 LINE L1 5884 6558 -9 7 942 1419 95 11 0 chr11 46901787 46901966 -74941890 - B2_Mm2 SINE B2 -14 181 1 7 942 328 331 62 21 chr11 46902357 46902502 -74941354 + RSINE1 SINE B4 4 154 -11 7 942 208 289 147 17 chr11 46903398 46903514 -74940342 + MIRc SINE MIR 41 171 -97 7 942 459 0 0 0 chr11 46904300 46904351 -74939505 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 942 180 0 0 0 chr11 46904351 46904370 -74939486 + (GA)n Simple_repeat Simple_repeat 2 21 0 7 942 1328 40 0 0 chr11 46904807 46904955 -74938901 - B1_Mus1 SINE Alu 0 148 1 7 942 1258 220 82 34 chr11 46905012 46905304 -74938552 + MTD LTR MaLR 1 306 -113 7 942 546 221 0 17 chr11 46905469 46905584 -74938272 + MTD LTR MaLR 307 419 0 7 942 292 291 48 19 chr11 46905584 46905689 -74938167 + MLT1A LTR MaLR 89 196 -178 7 942 21 71 0 0 chr11 46906198 46906240 -74937616 + AT_rich Low_complexity Low_complexity 1 42 0 7 942 21 0 0 0 chr11 46906571 46906592 -74937264 + AT_rich Low_complexity Low_complexity 1 21 0 7 942 414 39 0 0 chr11 46906592 46906644 -74937212 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 942 288 0 0 0 chr11 46906644 46906675 -74937181 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 942 713 293 45 52 chr11 46906700 46906988 -74936868 - B4A SINE B4 -6 286 1 7 942 25 65 0 0 chr11 46907669 46907715 -74936141 + AT_rich Low_complexity Low_complexity 1 46 0 7 942 1377 282 19 16 chr11 46907957 46908335 -74935521 + MTEb LTR MaLR 1 379 0 7 942 324 266 26 17 chr11 46908354 46908469 -74935387 + (TATG)n Simple_repeat Simple_repeat 1 116 0 7 942 324 292 0 0 chr11 46908899 46909012 -74934844 + GA-rich Low_complexity Low_complexity 2 114 0 7 942 237 230 0 0 chr11 46910541 46910615 -74933241 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 942 339 261 218 34 chr11 46910615 46910762 -74933094 - B3A SINE B2 -16 182 9 7 942 219 36 0 0 chr11 46911118 46911146 -74932710 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 942 228 319 32 21 chr11 46911946 46912039 -74931817 + MamGypLTR1b LTR Gypsy 364 457 -325 7 942 1071 207 77 38 chr11 46912104 46912365 -74931491 - Lx8 LINE L1 -11 7462 7192 7 942 1511 247 58 68 chr11 46913444 46913989 -74929867 + RLTR20B3 LTR ERVK 21 527 0 7 942 1022 225 14 48 chr11 46915047 46915257 -74928599 - B3 SINE B2 -6 210 8 7 942 678 314 42 19 chr11 46915302 46915516 -74928340 - ID_B1 SINE B4 -5 219 1 7 942 360 368 38 56 chr11 46917042 46917255 -74926601 + MER58A DNA MER1_type 2 210 -14 7 942 261 57 0 0 chr11 46917336 46917371 -74926485 + (CAA)n Simple_repeat Simple_repeat 3 37 0 7 942 189 0 0 0 chr11 46919238 46919259 -74924597 + (A)n Simple_repeat Simple_repeat 1 21 0 7 942 246 330 97 23 chr11 46920315 46920532 -74923324 + Charlie4a DNA MER1_type 14 246 -262 7 942 230 52 48 65 chr11 46921681 46921743 -74922113 + T-rich Low_complexity Low_complexity 2 62 0 7 942 295 256 170 131 chr11 46922006 46922235 -74921621 + MER34 LTR ERV1 6 243 -299 7 942 298 153 0 40 chr11 46922305 46922380 -74921476 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 7 942 324 0 0 0 chr11 46922512 46922548 -74921308 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 942 270 0 0 0 chr11 46922803 46922833 -74921023 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 7 942 265 193 0 17 chr11 46922848 46922906 -74920950 + L1MB8 LINE L1 6117 6173 -5 7 942 180 333 110 31 chr11 46922920 46923047 -74920809 + MIR SINE MIR 33 169 -93 7 942 207 305 12 47 chr11 46923248 46923334 -74920522 + L2c LINE L2 3075 3157 -230 7 943 576 0 0 0 chr11 46924158 46924222 -74919634 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 943 297 0 0 0 chr11 46924225 46924258 -74919598 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 943 848 271 0 0 chr11 46924262 46924432 -74919424 - B3A SINE B2 -27 171 2 7 943 952 304 47 20 chr11 46924602 46924945 -74918911 - ORR1E LTR MaLR 0 359 8 7 943 425 19 19 0 chr11 46925055 46925109 -74918747 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 7 943 1369 89 0 27 chr11 46925109 46925294 -74918562 - B2_Mm2 SINE B2 -15 180 1 7 943 2042 164 17 9 chr11 46925707 46926052 -74917804 - ORR1B1 LTR MaLR -6 388 41 7 943 275 0 29 0 chr11 46926488 46926523 -74917333 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 7 943 658 168 274 34 chr11 46927454 46927633 -74916223 + URR1B DNA MER1_type 2 223 -2 7 943 194 316 0 0 chr11 46928512 46928569 -74915287 - L2a LINE L2 -7 3419 3363 7 943 711 103 31 8 chr11 46928650 46928777 -74915079 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 7 943 342 263 92 8 chr11 46928838 46928957 -74914899 - MER58B DNA MER1_type -2 339 211 7 943 267 336 231 26 chr11 46929134 46929403 -74914453 + MLT1K LTR MaLR 16 339 -256 7 943 436 114 22 22 chr11 46929532 46929622 -74914234 + (TCTG)n Simple_repeat Simple_repeat 4 93 0 7 943 697 315 89 46 chr11 46929627 46929907 -74913949 - B4A SINE B4 0 292 1 7 943 239 297 20 71 chr11 46930076 46930174 -74913682 + L2c LINE L2 3261 3353 -34 7 943 450 0 0 0 chr11 46930193 46930243 -74913613 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 943 359 333 74 28 chr11 46932311 46932487 -74911369 - MER5A DNA MER1_type -5 184 1 7 943 368 258 0 20 chr11 46932597 46932696 -74911160 + MTD LTR MaLR 1 97 -322 7 943 645 215 91 28 chr11 46932978 46933198 -74910658 + MTD LTR MaLR 145 418 -1 7 943 231 298 0 0 chr11 46933607 46933664 -74910192 + ID4 SINE ID 21 77 -6 7 943 3288 63 8 2 chr11 46933690 46934088 -74909768 + MTB LTR MaLR 1 400 0 7 943 490 262 23 83 chr11 46934176 46934309 -74909547 - B1F SINE Alu -24 125 1 7 943 217 319 13 65 chr11 46935546 46935623 -74908233 + PB1D10 SINE Alu 1 73 -44 7 943 351 167 0 0 chr11 46936435 46936501 -74907355 + G-rich Low_complexity Low_complexity 5 70 0 7 943 1249 58 12 0 chr11 46936510 46936681 -74907175 + (GGAGA)n Simple_repeat Simple_repeat 1 173 0 7 943 210 306 62 18 chr11 46937209 46937322 -74906534 - MIRb SINE MIR -102 166 49 7 943 834 233 22 160 chr11 46937474 46937671 -74906185 + B3 SINE B2 2 192 -24 7 943 342 0 0 0 chr11 46937671 46937709 -74906147 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 943 429 233 22 160 chr11 46937709 46937736 -74906120 + B2_Mm2 SINE B2 172 195 0 7 943 328 298 148 9 chr11 46937802 46937917 -74905939 - B1F SINE Alu -16 133 3 7 943 285 350 41 57 chr11 46938323 46938517 -74905339 - MLT1B LTR MaLR -10 380 174 7 943 214 246 42 28 chr11 46938527 46938598 -74905258 + G-rich Low_complexity Low_complexity 4 75 0 7 943 427 221 12 18 chr11 46938610 46938776 -74905080 + GA-rich Low_complexity Low_complexity 5 169 0 8 943 1043 150 69 0 chr11 46939830 46940003 -74903853 - B2_Mm2 SINE B2 -8 187 3 8 943 536 324 85 59 chr11 46940366 46940684 -74903172 - MER90 LTR ERV1 -19 556 233 8 943 300 27 0 0 chr11 46940684 46940721 -74903135 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 943 536 324 85 59 chr11 46940721 46940789 -74903067 - MER90 LTR ERV1 -343 232 160 8 943 342 45 0 0 chr11 46940791 46940835 -74903021 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 943 277 312 106 11 chr11 46940946 46941040 -74902816 - MER90 LTR ERV1 -472 103 1 8 943 199 54 54 0 chr11 46941195 46941232 -74902624 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 943 426 308 29 23 chr11 46943215 46943435 -74900421 + GA-rich Low_complexity Low_complexity 1 221 0 8 943 813 284 14 61 chr11 46944438 46944734 -74899122 + B4A SINE B4 1 282 -10 8 943 324 0 0 0 chr11 46944791 46944827 -74899029 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 943 399 272 0 34 chr11 46944883 46945001 -74898855 - Lx8 LINE L1 -693 6780 6667 8 943 894 320 50 57 chr11 46945041 46945397 -74898459 + Lx8 LINE L1 6772 7110 -363 8 943 318 115 0 0 chr11 46945397 46945449 -74898407 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 943 894 320 50 57 chr11 46945449 46945792 -74898064 + Lx8 LINE L1 7111 7466 -7 8 943 6181 71 82 7 chr11 46946277 46947165 -74896691 + RLTR13D4 LTR ERVK 3 957 -76 8 943 428 250 0 30 chr11 46947853 46947985 -74895871 - Lx9 LINE L1 -213 7431 7304 8 943 633 245 43 55 chr11 46948010 46948174 -74895682 - RSINE1 SINE B4 0 165 4 8 943 256 290 46 53 chr11 46948808 46948939 -74894917 - Tigger15a DNA TcMar -146 569 440 8 943 22 35 0 0 chr11 46948988 46949017 -74894839 + AT_rich Low_complexity Low_complexity 1 29 0 8 943 608 175 8 26 chr11 46949313 46949430 -74894426 + ORR1D1 LTR MaLR 1 115 -259 8 943 249 335 32 73 chr11 46949635 46949883 -74893973 - HAL1 LINE L1 -1908 599 362 8 943 298 366 36 9 chr11 46950951 46951075 -74892781 + MIRb SINE MIR 38 164 -112 8 943 979 163 6 0 chr11 46951165 46951331 -74892525 - URR1A DNA MER1_type 0 226 60 8 943 482 268 61 61 chr11 46951368 46951646 -74892210 + L1MC3 LINE L1 6764 7041 -744 8 943 847 309 60 31 chr11 46951728 46952246 -74891610 + L1MC3 LINE L1 7221 7753 -32 8 943 252 191 0 0 chr11 46953093 46953140 -74890716 + L2c LINE L2 3341 3387 0 8 943 192 224 16 65 chr11 46953307 46953369 -74890487 - L2c LINE L2 -3 3384 3326 8 943 501 17 0 0 chr11 46953954 46954012 -74889844 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 943 562 254 96 24 chr11 46954042 46954318 -74889538 - L1MA6 LINE L1 -1577 5896 5589 8 943 466 287 80 25 chr11 46954490 46954754 -74889102 - L1MA6 LINE L1 -714 5583 5307 8 943 1034 234 179 30 chr11 46954770 46955100 -74888756 - ORR1D1 LTR MaLR 0 384 6 8 943 1135 303 108 39 chr11 46955120 46955969 -74887887 - L1MA6 LINE L1 -867 5276 4380 8 943 462 49 0 0 chr11 46955969 46956030 -74887826 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 8 943 1135 303 108 39 chr11 46956030 46956203 -74887653 - L1MA6 LINE L1 -1764 4379 4184 8 943 205 408 96 16 chr11 46956206 46956393 -74887463 - L2b LINE L2 -221 3154 2953 8 943 3301 77 7 0 chr11 46956404 46956848 -74887008 + L1_Mus3 LINE L1 6190 6636 -2 8 943 2196 174 26 3 chr11 46958330 46958715 -74885141 + ORR1B1 LTR MaLR 1 394 0 8 943 486 0 0 0 chr11 46958787 46958841 -74885015 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 943 183 139 0 0 chr11 46958845 46958881 -74884975 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 943 470 295 24 8 chr11 46959773 46959896 -74883960 + B1F SINE Alu 24 148 -1 8 943 459 0 0 0 chr11 46960241 46960292 -74883564 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 943 244 301 103 57 chr11 46961011 46961205 -74882651 + MIRb SINE MIR 39 241 -27 8 943 242 217 0 14 chr11 46962324 46962394 -74881462 + CT-rich Low_complexity Low_complexity 2 70 0 8 943 350 279 0 0 chr11 46962504 46962590 -74881266 - PB1D10 SINE Alu -19 98 13 8 943 258 360 77 17 chr11 46962778 46962959 -74880897 + L2a LINE L2 3210 3401 -25 8 943 348 365 48 15 chr11 46963657 46963863 -74879993 + MIR SINE MIR 23 235 -27 8 943 615 27 0 0 chr11 46964021 46964094 -74879762 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 943 252 86 0 0 chr11 46964105 46964140 -74879716 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 943 476 278 0 53 chr11 46964142 46964256 -74879600 - B3A SINE B2 -44 154 47 8 943 429 310 62 104 chr11 46964355 46964757 -74879099 + MLT2C2 LTR ERVL 89 464 0 8 943 804 346 64 38 chr11 46965418 46965868 -74877988 + MT2A LTR ERVL 1 462 -71 8 943 633 90 0 0 chr11 46965883 46965972 -74877884 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 943 186 43 0 0 chr11 46966925 46966948 -74876908 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 8 943 293 278 65 2 chr11 46967350 46967518 -74876338 + L1MA7 LINE L1 5821 6003 -168 8 943 601 234 100 12 chr11 46967535 46967695 -74876161 + RMER30 DNA MER1_type 12 185 -17 8 943 268 322 184 11 chr11 46968161 46968340 -74875516 + MIR SINE MIR 25 238 -30 8 943 833 191 0 11 chr11 46968819 46968999 -74874857 + CT-rich Low_complexity Low_complexity 1 178 0 8 943 480 136 0 0 chr11 46968999 46969087 -74874769 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 8 943 695 71 10 0 chr11 46969106 46969204 -74874652 + (TTC)n Simple_repeat Simple_repeat 2 100 0 8 943 183 349 35 90 chr11 46969547 46969692 -74874164 - MIRb SINE MIR -104 164 28 8 943 353 119 0 63 chr11 46969900 46969963 -74873893 - HAL1-3A_ME LINE L1 -824 2034 1976 8 943 437 250 6 0 chr11 46970042 46970214 -74873642 + (TG)n Simple_repeat Simple_repeat 1 173 0 8 943 753 244 110 51 chr11 46970238 46970493 -74873363 - B4A SINE B4 -18 274 5 8 943 683 309 0 6 chr11 46971223 46971405 -74872451 + B3A SINE B2 1 181 -17 8 943 261 234 0 0 chr11 46971405 46971469 -74872387 + (CACG)n Simple_repeat Simple_repeat 4 67 0 8 943 474 49 0 0 chr11 46971878 46971939 -74871917 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 943 1490 216 72 3 chr11 46971948 46972254 -74871602 + ORR1B1 LTR MaLR 29 355 -39 8 943 32509 59 10 4 chr11 46972264 46977233 -74866623 + L1Md_F2 LINE L1 584 5586 -297 8 943 7287 73 8 16 chr11 46977235 46978236 -74865620 + L1Md_F2 LINE L1 5589 6581 -1 8 943 295 170 0 0 chr11 46978236 46978289 -74865567 + ORR1B1 LTR MaLR 342 394 0 8 943 255 352 97 11 chr11 46978430 46978589 -74865267 - MIRb SINE MIR -25 183 12 8 943 468 308 12 12 chr11 46979524 46979695 -74864161 + Lx8 LINE L1 7091 7261 -212 8 943 254 362 43 0 chr11 46980776 46980870 -74862986 - MER58A DNA MER1_type -125 99 2 8 943 1995 158 35 9 chr11 46982163 46982502 -74861354 - ORR1B1 LTR MaLR 0 394 47 8 943 23 33 0 0 chr11 46982723 46982753 -74861103 + AT_rich Low_complexity Low_complexity 1 30 0 8 943 1861 193 11 6 chr11 46984405 46984770 -74859086 - ORR1B2 LTR MaLR 0 367 1 8 943 286 324 59 59 chr11 46985389 46985507 -74858349 - B1F2 SINE Alu -31 118 1 8 943 324 0 0 0 chr11 46985516 46985552 -74858304 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 943 392 339 65 0 chr11 46985586 46985710 -74858146 + MER20 DNA MER1_type 26 157 -62 8 943 664 313 41 7 chr11 46986086 46986379 -74857477 - Lx9 LINE L1 -171 7473 7171 8 943 905 233 27 54 chr11 46987221 46987443 -74856413 - B3 SINE B2 0 216 1 8 943 961 246 10 15 chr11 46987958 46988164 -74855692 + B3 SINE B2 2 206 -10 8 943 22 0 0 0 chr11 46988631 46988653 -74855203 + AT_rich Low_complexity Low_complexity 1 22 0 8 943 203 331 60 27 chr11 46989290 46989439 -74854417 - MIRb SINE MIR -19 249 96 8 943 3932 109 159 106 chr11 46989642 46990097 -74853759 + RMER17A2 LTR ERVK 1 445 -461 8 943 836 46 9 0 chr11 46990097 46990206 -74853650 + (TC)n Simple_repeat Simple_repeat 1 110 0 8 943 3932 109 159 106 chr11 46990206 46990610 -74853246 + RMER17A2 LTR ERVK 446 905 -1 8 943 372 342 78 13 chr11 46990684 46990838 -74853018 + MER20 DNA MER1_type 56 219 0 8 943 181 330 0 96 chr11 46991296 46991400 -74852456 + MIRb SINE MIR 116 209 -59 8 943 307 260 27 0 chr11 46991741 46991814 -74852042 + HAL1-3A_ME LINE L1 1976 2050 -808 8 943 245 27 54 0 chr11 46992838 46992875 -74850981 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 8 943 686 250 53 46 chr11 46993045 46993368 -74850488 + Lx9 LINE L1 7300 7624 -20 8 943 21 36 0 0 chr11 46993368 46993396 -74850460 + AT_rich Low_complexity Low_complexity 1 28 0 8 943 1009 279 21 94 chr11 46993723 46994107 -74849749 + MTE2a LTR MaLR 4 359 -20 8 943 268 438 15 0 chr11 46994144 46994281 -74849575 + LTR78 LTR ERV1 429 567 -737 8 943 191 315 0 88 chr11 46996563 46996643 -74847213 - MIRb SINE MIR -170 98 23 8 943 1095 300 44 25 chr11 46996929 46997295 -74846561 + MTEa LTR MaLR 7 379 0 8 943 324 196 149 116 chr11 46997702 46997823 -74846033 + B2_Mm2 SINE B2 1 125 -70 8 943 3059 124 41 16 chr11 46997830 46998322 -74845534 + Lx2 LINE L1 6492 6995 -2 8 943 1682 30 0 0 chr11 46999051 46999248 -74844608 + L1_Mus1 LINE L1 6367 6563 -4 8 943 397 310 56 32 chr11 47000492 47000719 -74843137 - MIR SINE MIR -4 264 30 1 943 306 0 0 0 chr11 47000723 47000757 -74843099 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 943 189 0 0 0 chr11 47002104 47002125 -74841731 + (A)n Simple_repeat Simple_repeat 1 21 0 3 943 301 309 82 14 chr11 47002771 47002978 -74840878 + L1MA7 LINE L1 4710 4930 -1213 4 943 654 171 0 0 chr11 47002978 47003101 -74840755 + (TA)n Simple_repeat Simple_repeat 1 123 0 5 943 257 75 25 0 chr11 47003092 47003132 -74840724 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 943 1072 126 1 0 chr11 47003181 47003356 -74840500 - B2_Mm2 SINE B2 -14 179 3 7 943 329 215 11 0 chr11 47003492 47003585 -74840271 + T-rich Low_complexity Low_complexity 2 95 0 8 943 707 276 78 58 chr11 47003696 47004365 -74839491 + L1MA7 LINE L1 5212 5903 -388 4 943 201 39 0 0 chr11 47004365 47004391 -74839465 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 943 195 39 0 0 chr11 47005207 47005222 -74838634 + (A)n Simple_repeat Simple_repeat 1 15 0 1 943 1151 68 0 13 chr11 47005222 47005371 -74838485 + B1_Mus2 SINE Alu 1 147 0 1 943 195 39 0 0 chr11 47005371 47005381 -74838475 + (A)n Simple_repeat Simple_repeat 1 10 0 1 943 335 294 27 109 chr11 47006737 47006920 -74836936 + L1ME1 LINE L1 5908 6075 -104 1 943 252 59 0 0 chr11 47006954 47006988 -74836868 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 943 561 309 70 70 chr11 47007365 47007706 -74836150 - ORR1E LTR MaLR -7 352 12 1 943 279 0 0 0 chr11 47007897 47007928 -74835928 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 943 205 195 24 0 chr11 47008724 47008765 -74835091 + CT-rich Low_complexity Low_complexity 2 43 0 1 943 1088 288 62 24 chr11 47010067 47010470 -74833386 + MTE2b LTR MaLR 7 406 -13 1 943 261 269 24 63 chr11 47010468 47010598 -74833258 - MLT1E2 LTR MaLR -358 147 21 1 943 439 210 0 0 chr11 47010730 47010811 -74833045 + ID_B1 SINE B4 124 204 -20 2 943 258 275 0 14 chr11 47010816 47010886 -74832970 + CT-rich Low_complexity Low_complexity 1 69 0 2 943 1234 122 17 0 chr11 47011898 47012078 -74831778 + B2_Mm2 SINE B2 3 185 -10 2 943 229 312 88 9 chr11 47012960 47013073 -74830783 + L2a LINE L2 3305 3426 0 2 943 652 266 34 62 chr11 47013678 47013970 -74829886 - Lx8 LINE L1 -4 7469 7186 2 943 1817 152 44 3 chr11 47013977 47014274 -74829582 - RMER17D LTR ERVK -3 886 578 2 943 507 157 0 0 chr11 47014439 47014528 -74829328 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 943 3033 95 49 83 chr11 47014616 47015227 -74828629 - RMER17D LTR ERVK -299 590 1 2 943 597 260 22 6 chr11 47015259 47015437 -74828419 - Lx8 LINE L1 -311 7162 6982 2 943 217 333 17 61 chr11 47016219 47016334 -74827522 - MIR SINE MIR -36 226 117 2 943 983 282 53 39 chr11 47016510 47017134 -74826722 + L1MB8 LINE L1 5500 6152 -26 2 943 207 182 0 0 chr11 47017760 47017793 -74826063 + polypurine Low_complexity Low_complexity 2 34 0 2 943 285 287 39 29 chr11 47018343 47018447 -74825409 - MLT1I LTR MaLR 0 411 307 3 943 248 324 95 0 chr11 47018944 47019049 -74824807 + PB1D10 SINE Alu 1 115 -2 3 943 419 238 74 98 chr11 47019131 47019294 -74824562 + B3A SINE B2 40 198 0 3 943 1401 52 10 5 chr11 47020770 47020963 -74822893 - L1_Mus2 LINE L1 -499 6067 5874 3 943 3754 73 30 2 chr11 47020963 47021469 -74822387 + L1_Mus2 LINE L1 6046 6565 -1 3 943 423 227 145 64 chr11 47022882 47023117 -74820739 + L1MA8 LINE L1 6032 6285 -6 3 943 367 269 55 34 chr11 47023138 47023284 -74820572 + MLT2B4 LTR ERVL 184 332 -340 3 943 741 281 5 5 chr11 47024310 47024521 -74819335 + Lx6 LINE L1 7105 7315 -145 3 943 237 350 93 12 chr11 47025418 47025580 -74818276 + MIRb SINE MIR 52 226 -42 3 943 309 202 115 85 chr11 47025672 47025696 -74818160 - B2_Mm2 SINE B2 -4 191 169 3 943 330 26 0 0 chr11 47025696 47025735 -74818121 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 943 374 213 123 74 chr11 47025735 47025855 -74818001 - B3A SINE B2 -27 168 43 3 943 235 268 0 66 chr11 47025882 47025958 -74817898 + MLT2B4 LTR ERVL 347 417 -300 3 943 377 335 102 31 chr11 47026802 47027040 -74816816 + L2a LINE L2 2995 3255 -132 4 943 1101 87 0 0 chr11 47028552 47028690 -74815166 + B1_Mus1 SINE Alu 1 138 -10 4 943 2306 206 47 11 chr11 47028803 47029269 -74814587 - RMER13A LTR ERVK -377 483 1 4 943 1301 222 31 17 chr11 47029799 47030092 -74813764 - ORR1D1 LTR MaLR -3 371 75 4 943 1318 169 5 5 chr11 47030085 47030305 -74813551 + URR1A DNA MER1_type 7 226 0 4 943 346 311 0 0 chr11 47030305 47030395 -74813461 - ORR1D1 LTR MaLR -284 90 1 4 943 229 314 139 0 chr11 47030399 47030485 -74813371 + PB1D7 SINE Alu 14 111 -9 4 943 672 276 36 42 chr11 47030582 47030775 -74813081 + B3A SINE B2 1 192 -6 4 943 399 333 85 15 chr11 47031190 47031391 -74812465 + MER20 DNA MER1_type 5 219 0 4 943 3719 143 6 94 chr11 47031896 47032600 -74811256 - RLTR26 LTR ERVK 0 642 1 4 943 218 298 91 50 chr11 47033860 47034027 -74809829 - MIRc SINE MIR -47 221 51 4 943 1829 304 39 15 chr11 47034333 47034868 -74808988 + MTE2b-int LTR MaLR 1031 1578 -2 5 943 1110 288 34 111 chr11 47034884 47035271 -74808585 + MTE2b LTR MaLR 19 375 -4 5 943 25 0 0 0 chr11 47035581 47035606 -74808250 + AT_rich Low_complexity Low_complexity 1 25 0 5 943 948 312 24 34 chr11 47035813 47036108 -74807748 - B4A SINE B4 0 292 1 5 943 306 73 0 0 chr11 47036388 47036429 -74807427 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 943 365 224 253 46 chr11 47036477 47036635 -74807221 + B3A SINE B2 1 191 -25 5 943 291 71 0 0 chr11 47036685 47036727 -74807129 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 943 315 0 0 0 chr11 47036991 47037026 -74806830 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 943 450 312 65 0 chr11 47037135 47037273 -74806583 + MER2 DNA MER2_type 151 297 -48 5 943 627 280 24 63 chr11 47037306 47037512 -74806344 + B3A SINE B2 1 198 0 5 943 373 270 54 9 chr11 47038687 47038799 -74805057 + LTR78 LTR ERV1 1084 1200 -104 5 943 339 352 0 0 chr11 47039951 47040056 -74803800 + Lx8 LINE L1 7132 7236 -237 6 943 507 73 0 0 chr11 47040058 47040126 -74803730 + (TCC)n Simple_repeat Simple_repeat 2 69 0 6 943 342 326 10 0 chr11 47040126 47040224 -74803632 + Lx8 LINE L1 7231 7329 -144 6 943 207 88 0 0 chr11 47040228 47040262 -74803594 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 6 943 591 74 0 0 chr11 47040263 47040344 -74803512 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 6 943 286 335 50 50 chr11 47041420 47041599 -74802257 - MIRb SINE MIR -8 260 82 6 943 21 57 0 0 chr11 47041745 47041780 -74802076 + AT_rich Low_complexity Low_complexity 1 35 0 6 943 1100 169 4 161 chr11 47042234 47042495 -74801361 + RMER19B LTR ERVK 3 222 -680 6 943 2560 179 70 23 chr11 47042521 47043048 -74800808 + RMER19B LTR ERVK 339 890 -12 6 943 217 382 37 43 chr11 47043246 47043410 -74800446 + MIR3 SINE MIR 23 185 -23 6 943 351 20 0 0 chr11 47043493 47043542 -74800314 - L1Md_T LINE L1 -3 6579 6531 6 943 290 288 8 41 chr11 47043810 47043933 -74799923 - L1M5 LINE L1 -1528 4618 4500 6 943 1077 83 0 0 chr11 47044345 47044478 -74799378 + B1_Mus2 SINE Alu 5 137 -10 7 943 228 35 0 0 chr11 47044478 47044507 -74799349 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 943 552 291 15 0 chr11 47045106 47045240 -74798616 - B1_Mur1 SINE Alu 0 149 14 7 943 1039 261 5 5 chr11 47045616 47045832 -74798024 - B3 SINE B2 0 216 1 7 943 227 328 0 0 chr11 47046031 47046095 -74797761 - Charlie24 DNA MER1_type -13 2437 2374 7 943 222 37 0 0 chr11 47046125 47046152 -74797704 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 7 943 180 0 0 0 chr11 47046372 47046392 -74797464 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 943 180 0 0 0 chr11 47047249 47047269 -74796587 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 7 943 1039 116 0 33 chr11 47047269 47047421 -74796435 - B1_Mus2 SINE Alu 0 147 1 7 943 522 320 93 11 chr11 47047733 47047916 -74795940 + MER58A DNA MER1_type 2 199 -25 7 943 281 237 222 0 chr11 47047986 47048121 -74795735 - ORSL DNA Tip100 -6 269 105 8 943 1039 252 0 0 chr11 47048122 47048332 -74795524 + B3 SINE B2 2 211 -5 8 943 572 267 15 8 chr11 47048369 47048501 -74795355 + B1F SINE Alu 7 139 -10 8 943 1518 185 174 14 chr11 47048585 47048946 -74794910 + MTD LTR MaLR 1 419 0 8 943 306 0 0 0 chr11 47051528 47051562 -74792294 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 943 271 254 0 69 chr11 47051753 47051825 -74792031 - RSINE1 SINE B4 -87 78 12 8 943 261 286 16 125 chr11 47052303 47052431 -74791425 + Tigger15a DNA TcMar 120 233 -482 8 943 261 180 0 0 chr11 47052646 47052696 -74791160 + (TATG)n Simple_repeat Simple_repeat 2 51 0 8 943 584 209 6 0 chr11 47053738 47053910 -74789946 + (TG)n Simple_repeat Simple_repeat 1 173 0 8 943 527 222 0 16 chr11 47053934 47054195 -74789661 + (TG)n Simple_repeat Simple_repeat 1 256 0 8 944 1269 314 70 32 chr11 47056539 47057099 -74786757 - MLT1C-int LTR MaLR -787 584 4 8 944 324 342 54 36 chr11 47057102 47057269 -74786587 - MLT1C LTR MaLR 0 467 298 8 944 269 204 74 36 chr11 47057365 47057483 -74786373 - MLT1C LTR MaLR -369 136 13 8 944 329 320 0 10 chr11 47057701 47057805 -74786051 - L1ME1 LINE L1 -254 5925 5823 9 944 380 372 66 5 chr11 47057876 47058073 -74785783 - MER20 DNA MER1_type -2 217 9 9 944 819 226 0 0 chr11 47059293 47059452 -74784404 - L3 LINE CR1 -981 3508 3350 9 944 326 172 0 51 chr11 47059567 47059665 -74784191 + GA-rich Low_complexity Low_complexity 4 96 0 9 944 462 61 0 0 chr11 47059865 47059931 -74783925 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 944 23 33 0 0 chr11 47060920 47060950 -74782906 + AT_rich Low_complexity Low_complexity 1 30 0 9 944 211 285 18 23 chr11 47061768 47061864 -74781992 + MIR3 SINE MIR 106 202 -6 9 944 449 302 50 14 chr11 47062287 47062428 -74781428 + RSINE1 SINE B4 4 149 -16 9 944 21 0 0 0 chr11 47062625 47062646 -74781210 + AT_rich Low_complexity Low_complexity 1 21 0 9 944 182 322 17 0 chr11 47062873 47062932 -74780924 + L2c LINE L2 3290 3349 -38 9 944 410 320 137 20 chr11 47063384 47063639 -74780217 - B4A SINE B4 -7 285 1 1 944 1608 306 53 12 chr11 47064768 47065261 -74778595 - Lx5 LINE L1 -18 7032 6520 1 944 244 218 0 35 chr11 47065302 47065359 -74778497 - Lx5 LINE L1 -461 6589 6535 1 944 2486 195 29 37 chr11 47065359 47065954 -74777902 + L1_Mur3 LINE L1 2476 3065 -2815 1 944 3139 116 39 59 chr11 47066359 47066917 -74776939 + Lx LINE L1 6076 6622 -32 1 944 353 39 0 19 chr11 47066917 47066969 -74776887 + (TAAAA)n Simple_repeat Simple_repeat 3 53 0 1 944 1179 297 24 29 chr11 47066969 47067309 -74776547 + ORR1E LTR MaLR 22 359 0 1 944 981 234 19 19 chr11 47069073 47069286 -74774570 + B3 SINE B2 4 216 0 1 944 334 296 0 31 chr11 47069289 47069319 -74774537 + L1MB5 LINE L1 5173 5202 -944 1 944 321 302 104 0 chr11 47069319 47069425 -74774431 + PB1D10 SINE Alu 1 117 0 1 944 974 315 147 26 chr11 47069425 47070292 -74773564 + L1MB5 LINE L1 5203 6174 0 1 944 259 246 62 0 chr11 47070635 47070700 -74773156 + MER106B DNA MER1_type 909 977 -82 1 944 1579 251 17 11 chr11 47070719 47071078 -74772778 + MTE2a LTR MaLR 19 379 0 1 944 3968 58 0 17 chr11 47071255 47071728 -74772128 - L1_Mus1 LINE L1 0 6567 6103 1 944 762 257 69 0 chr11 47071792 47071967 -74771889 + B3 SINE B2 20 206 -10 1 944 216 135 0 0 chr11 47073530 47073567 -74770289 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 1 944 215 173 0 19 chr11 47074195 47074248 -74769608 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 944 1006 271 43 18 chr11 47074248 47074526 -74769330 - B4A SINE B4 0 292 8 1 944 243 0 0 0 chr11 47074736 47074763 -74769093 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 944 480 291 9 0 chr11 47074828 47074938 -74768918 - ORR1E LTR MaLR -248 111 1 1 944 558 266 43 14 chr11 47075758 47075899 -74767957 - B1_Mur1 SINE Alu -2 147 3 1 944 320 347 0 10 chr11 47076018 47076117 -74767739 - PB1 SINE Alu -2 125 28 1 944 2841 28 15 3 chr11 47076474 47076798 -74767058 + L1Md_F3 LINE L1 6255 6582 -2 1 944 707 275 42 11 chr11 47077322 47077513 -74766343 + B3A SINE B2 2 198 0 1 944 22 0 0 0 chr11 47077513 47077535 -74766321 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 229 200 50 91 chr11 47078992 47079091 -74764765 + MLT1A1 LTR MaLR 309 403 -5 1 944 594 208 11 11 chr11 47079456 47079636 -74764220 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 944 210 167 0 0 chr11 47079657 47079693 -74764163 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 944 280 279 66 0 chr11 47079705 47079766 -74764090 - ID4_ SINE ID -18 65 1 1 944 332 295 29 79 chr11 47079787 47079927 -74763929 - B1F1 SINE Alu -11 138 6 1 944 231 88 0 0 chr11 47079942 47079976 -74763880 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 944 208 254 0 0 chr11 47079977 47080032 -74763824 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 944 231 321 89 0 chr11 47080281 47080393 -74763463 + MIRb SINE MIR 45 166 -102 1 944 607 336 111 23 chr11 47080427 47080777 -74763079 + MER68 LTR ERVL 1 381 -182 1 944 631 234 70 0 chr11 47081453 47081581 -74762275 + RSINE1 SINE B4 11 147 -18 1 944 611 283 121 0 chr11 47081638 47081804 -74762052 + ID_B1 SINE B4 1 186 -38 1 944 243 235 20 0 chr11 47081826 47081877 -74761979 + GA-rich Low_complexity Low_complexity 3 54 0 1 944 246 301 85 46 chr11 47082687 47082840 -74761016 + MER20 DNA MER1_type 37 195 -24 1 944 246 341 24 0 chr11 47084758 47084840 -74759016 + B1_Mur2 SINE Alu 57 140 -9 1 944 936 0 62 0 chr11 47085704 47085848 -74758008 + (GA)n Simple_repeat Simple_repeat 2 154 0 1 944 1118 255 125 18 chr11 47086616 47086997 -74756859 - MTD LTR MaLR -17 402 1 1 944 461 330 35 60 chr11 47087480 47087680 -74756176 - B3A SINE B2 -3 195 1 1 944 180 212 0 0 chr11 47088056 47088089 -74755767 + L3b LINE CR1 184 216 -266 1 944 1006 123 20 0 chr11 47089276 47089422 -74754434 + B2_Mm2 SINE B2 1 149 -46 1 944 372 104 0 0 chr11 47089425 47089492 -74754364 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 944 210 37 0 0 chr11 47089547 47089574 -74754282 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 944 635 182 36 50 chr11 47091878 47092017 -74751839 - B1_Mur3 SINE Alu -2 147 11 1 944 332 281 54 61 chr11 47092280 47092428 -74751428 - MLT1A LTR MaLR 0 374 228 1 944 999 123 6 22 chr11 47092883 47093066 -74750790 + CT-rich Low_complexity Low_complexity 1 180 0 1 944 360 298 149 0 chr11 47093476 47093590 -74750266 + MER58B DNA MER1_type 210 340 -1 1 944 3948 102 21 5 chr11 47094143 47094708 -74749148 - L1_Mm LINE L1 -3257 2626 2051 1 944 1244 75 0 0 chr11 47094708 47094855 -74749001 - B1_Mus2 SINE Alu 0 147 1 1 944 3948 102 21 5 chr11 47094855 47094872 -74748984 - L1_Mm LINE L1 -3833 2050 2035 1 944 8077 56 0 8 chr11 47094885 47095987 -74747869 + L1_Mus1 LINE L1 5468 6560 -7 1 944 246 32 0 0 chr11 47095987 47096018 -74747838 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 944 209 271 59 59 chr11 47096516 47096618 -74747238 + MIRm SINE MIR 163 264 -12 1 944 397 206 0 19 chr11 47097157 47097261 -74746595 + GA-rich Low_complexity Low_complexity 1 102 0 1 944 261 344 0 0 chr11 47097261 47097322 -74746534 - tRNA-Ala-GCY_ tRNA tRNA -10 65 5 1 944 223 370 15 23 chr11 47097851 47097981 -74745875 - MIRb SINE MIR -136 132 4 1 944 548 343 45 35 chr11 47098432 47098719 -74745137 + B4A SINE B4 3 292 0 1 944 357 24 0 0 chr11 47098743 47098785 -74745071 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 944 250 382 40 27 chr11 47099288 47099436 -74744420 - MIR SINE MIR -65 197 48 1 944 237 211 0 0 chr11 47099757 47099809 -74744047 + GA-rich Low_complexity Low_complexity 1 52 0 1 944 749 41 0 10 chr11 47100442 47100540 -74743316 + (TCC)n Simple_repeat Simple_repeat 3 99 0 1 944 360 0 0 0 chr11 47100916 47100956 -74742900 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 944 577 274 62 0 chr11 47101692 47101838 -74742018 + B4A SINE B4 6 160 -132 1 944 214 278 33 22 chr11 47101963 47102055 -74741801 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 944 701 268 41 15 chr11 47102300 47102497 -74741359 - B3 SINE B2 0 216 15 1 944 221 239 118 15 chr11 47102570 47102638 -74741218 - L2b LINE L2 -92 3283 3209 1 944 382 191 61 10 chr11 47103194 47103313 -74740543 + Lx4B LINE L1 6882 7050 -8 1 944 410 379 63 16 chr11 47103774 47104026 -74739830 - MLT1E3 LTR MaLR -46 578 315 1 944 841 266 230 13 chr11 47104091 47104400 -74739456 - MTEa LTR MaLR 0 379 4 1 944 182 238 0 23 chr11 47104529 47104572 -74739284 - MIRc SINE MIR -75 193 152 1 944 237 179 88 18 chr11 47104587 47104644 -74739212 - MLT1E1A LTR MaLR -617 63 3 1 944 306 164 0 0 chr11 47104705 47104766 -74739090 - Lx9 LINE L1 -10 7634 7574 1 944 1158 142 15 34 chr11 47104766 47104970 -74738886 + RLTR41 LTR ERV1 247 446 0 1 944 2632 114 86 27 chr11 47105779 47106185 -74737671 + RLTR23 LTR ERV1 1 430 0 1 944 236 272 74 93 chr11 47106353 47106515 -74737341 - MIRb SINE MIR -82 186 28 1 944 439 246 53 15 chr11 47106877 47107009 -74736847 + L1MB3 LINE L1 5548 5684 -499 1 944 1960 233 19 50 chr11 47107124 47107422 -74736434 + RMER5 LTR ERV1 3 285 -249 1 944 5244 57 8 3 chr11 47107422 47108052 -74735804 + L1Md_F2 LINE L1 5948 6580 -2 1 944 1960 233 19 50 chr11 47108052 47108218 -74735638 + RMER5 LTR ERV1 286 453 -81 1 944 3550 53 2 0 chr11 47108601 47109035 -74734821 - L1_Mus1 LINE L1 -513 6054 5620 1 944 917 89 7 50 chr11 47109035 47109176 -74734680 + L1_Mus1 LINE L1 6433 6567 0 1 944 539 155 0 0 chr11 47109299 47109383 -74734473 + RMER5 LTR ERV1 451 534 0 1 944 303 302 31 23 chr11 47109393 47109522 -74734334 + L1MB3 LINE L1 5859 5988 -195 1 944 262 236 152 33 chr11 47109568 47109660 -74734196 + L1MB3 LINE L1 6059 6161 -22 1 944 2266 206 146 76 chr11 47110030 47110598 -74733258 + RMER19C LTR ERVK 1 608 -3 1 944 270 273 110 21 chr11 47110649 47110840 -74733016 - RLTR15 LTR ERVK -18 341 134 1 944 396 255 95 32 chr11 47110890 47111048 -74732808 - RLTR15 LTR ERVK -191 168 1 1 944 204 264 0 19 chr11 47111123 47111177 -74732679 + MER5A DNA MER1_type 36 88 -101 1 944 187 281 54 43 chr11 47111134 47111227 -74732629 - MER5B DNA MER1_type -34 144 51 1 944 188 381 92 10 chr11 47112102 47112200 -74731656 + MER5A DNA MER1_type 24 129 -60 1 944 477 284 103 0 chr11 47112207 47112323 -74731533 - B1F SINE Alu -21 128 1 1 944 1189 294 60 23 chr11 47113239 47113591 -74730265 + MTE2b LTR MaLR 1 365 -14 1 944 343 348 82 6 chr11 47113724 47113906 -74729950 + MER3 DNA MER1_type 5 200 -9 1 944 3833 52 10 0 chr11 47114600 47115081 -74728775 + L1Md_F2 LINE L1 6097 6582 0 1 944 464 337 95 60 chr11 47115091 47115492 -74728364 + MT2A LTR ERVL 16 430 -103 1 944 245 311 140 32 chr11 47116215 47116308 -74727548 + MER58B DNA MER1_type 7 109 -232 1 944 203 228 172 62 chr11 47116788 47116887 -74726969 + MIRc SINE MIR 2 107 -155 1 944 1262 248 78 3 chr11 47116887 47117170 -74726686 + MTEb LTR MaLR 1 304 -75 1 944 528 244 138 127 chr11 47117172 47117533 -74726323 + RLTR9A LTR ERVK 4 368 0 1 944 292 235 14 14 chr11 47117534 47117603 -74726253 + MTEb LTR MaLR 276 344 -35 1 944 992 180 38 11 chr11 47117613 47117798 -74726058 + MTC LTR MaLR 232 421 0 1 944 345 100 0 0 chr11 47118261 47118311 -74725545 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 944 664 304 40 44 chr11 47119257 47119484 -74724372 + B4 SINE B4 65 290 -2 1 944 611 298 82 127 chr11 47119582 47120032 -74723824 + MER89 LTR ERV1 129 558 -1 1 944 975 289 27 8 chr11 47120277 47120539 -74723317 - B4A SINE B4 -21 271 5 1 944 252 372 101 0 chr11 47121487 47121616 -74722240 - MER63B DNA AcHobo -8 428 287 1 944 2540 188 19 43 chr11 47121802 47122331 -74721525 + RMER5 LTR ERV1 5 520 -14 1 944 210 118 0 0 chr11 47123042 47123076 -74720780 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 2 944 4334 118 26 53 chr11 47123559 47124331 -74719525 + RMER17A LTR ERVK 1 751 0 2 944 579 344 5 44 chr11 47124731 47124935 -74718921 + B3A SINE B2 3 198 0 2 944 36 0 0 0 chr11 47125335 47125371 -74718485 + AT_rich Low_complexity Low_complexity 1 36 0 2 944 219 167 61 91 chr11 47127839 47127905 -74715951 + MIRb SINE MIR 192 255 -13 2 944 218 203 15 30 chr11 47128490 47128556 -74715300 + T-rich Low_complexity Low_complexity 2 66 0 2 944 180 356 42 42 chr11 47129242 47129409 -74714447 - L2c LINE L2 -86 3301 3135 2 944 6735 50 2 5 chr11 47129416 47130298 -74713558 - L1Md_F2 LINE L1 -1 6581 5702 2 944 4348 189 14 41 chr11 47130843 47131772 -74712084 + RMER13B LTR ERVK 1 904 -4 2 944 1286 272 33 21 chr11 47132156 47132490 -74711366 + MTEa LTR MaLR 40 377 -2 2 944 26 50 0 0 chr11 47133311 47133351 -74710505 + AT_rich Low_complexity Low_complexity 1 40 0 2 944 209 277 0 44 chr11 47134385 47134453 -74709403 - MIRb SINE MIR -85 183 119 2 944 322 366 186 19 chr11 47135159 47135622 -74708234 + L2 LINE L2 2525 3064 -355 2 944 472 322 78 3 chr11 47135684 47135977 -74707879 - L1MB3 LINE L1 -256 5927 5613 2 944 2424 64 22 0 chr11 47137152 47137464 -74706392 + L1_Mus1 LINE L1 6248 6566 -1 2 944 691 306 60 4 chr11 47137506 47137755 -74706101 - MER2 DNA MER2_type -1 344 82 2 944 200 128 26 0 chr11 47137902 47137941 -74705915 + T-rich Low_complexity Low_complexity 1 40 0 2 944 951 134 21 0 chr11 47137946 47138088 -74705768 - B1_Mus1 SINE Alu -1 147 3 2 944 340 295 123 62 chr11 47138791 47138921 -74704935 + ID_B1 SINE B4 87 224 0 2 944 420 308 23 0 chr11 47139561 47139694 -74704162 - B1F2 SINE Alu -13 136 1 2 944 1043 225 162 28 chr11 47139918 47140354 -74703502 + Lx9 LINE L1 7150 7643 -1 2 944 784 268 115 23 chr11 47140988 47141248 -74702608 + B4A SINE B4 1 284 -8 2 944 607 294 14 14 chr11 47142304 47142449 -74701407 + RSINE1 SINE B4 3 147 -18 2 944 1542 179 36 11 chr11 47142636 47142857 -74700999 + Lx5 LINE L1 3890 4117 -1763 2 944 2824 113 108 6 chr11 47142857 47143327 -74700529 + Lx LINE L1 6137 6654 0 2 944 1542 179 36 11 chr11 47143327 47143462 -74700394 + Lx5 LINE L1 4118 4255 -1625 2 944 1748 150 163 9 chr11 47143462 47143799 -74700057 - ORR1B1 LTR MaLR 0 394 6 2 944 1607 184 37 44 chr11 47143804 47144213 -74699643 + Lx5 LINE L1 4250 4655 -1222 2 944 3663 211 13 44 chr11 47144226 47145127 -74698729 + Lx4B LINE L1 6182 7054 -4 2 944 207 0 0 0 chr11 47145129 47145152 -74698704 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 944 2480 211 67 9 chr11 47145153 47146106 -74697750 + Lx5 LINE L1 5354 6363 -687 2 944 558 0 0 0 chr11 47146135 47146197 -74697659 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 944 1057 271 75 83 chr11 47146250 47146744 -74697112 + Lx5 LINE L1 6945 7434 -26 2 944 486 96 0 0 chr11 47148670 47148743 -74695113 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 944 452 144 121 11 chr11 47149795 47149886 -74693970 + PB1D10 SINE Alu 12 112 -5 2 944 381 339 108 102 chr11 47150881 47151169 -74692687 + B4 SINE B4 1 286 -6 2 944 213 211 0 0 chr11 47151788 47151840 -74692016 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 2 944 537 264 23 46 chr11 47151849 47151980 -74691876 - RSINE1 SINE B4 -35 130 3 2 944 525 198 0 0 chr11 47154305 47154416 -74689440 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 944 205 88 29 0 chr11 47154510 47154544 -74689312 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 2 944 1541 22 0 0 chr11 47154763 47154947 -74688909 + L1Md_A LINE L1 6399 6582 0 2 944 383 299 101 7 chr11 47154983 47155121 -74688735 - B3A SINE B2 -36 162 12 2 944 219 329 12 12 chr11 47155050 47155133 -74688723 - RSINE1 SINE B4 -82 83 1 2 944 193 280 51 39 chr11 47156548 47156626 -74687230 + MIRb SINE MIR 61 139 -129 2 944 1962 193 60 35 chr11 47157741 47158176 -74685680 - RLTR41 LTR ERV1 0 446 1 2 944 238 347 84 26 chr11 47158592 47158746 -74685110 + MLT1G3 LTR MaLR 326 488 -107 2 944 446 0 19 0 chr11 47158969 47159023 -74684833 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 944 191 301 95 12 chr11 47159095 47159179 -74684677 - MIR3 SINE MIR -5 203 113 2 944 844 141 29 23 chr11 47159676 47159850 -74684006 + B2_Mm2 SINE B2 2 176 -19 2 944 2221 244 65 14 chr11 47160555 47161120 -74682736 + Lx5 LINE L1 6408 7001 -49 2 944 186 43 0 0 chr11 47161127 47161150 -74682706 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2 944 734 286 15 20 chr11 47161218 47161418 -74682438 + B4A SINE B4 43 241 -51 2 944 852 191 0 0 chr11 47161419 47161571 -74682285 - RMER1A Other Other -530 500 349 2 944 184 356 44 0 chr11 47162303 47162393 -74681463 - L2c LINE L2 -40 3347 3254 2 944 252 0 0 0 chr11 47162734 47162762 -74681094 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 944 219 167 0 0 chr11 47162765 47162807 -74681049 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2 944 349 326 39 11 chr11 47163399 47163579 -74680277 + MIR SINE MIR 2 186 -76 2 944 213 39 0 0 chr11 47164475 47164501 -74679355 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 944 1124 246 135 53 chr11 47164525 47164607 -74679249 - MTD LTR MaLR 0 419 345 2 944 419 0 20 0 chr11 47164607 47164658 -74679198 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 2 944 1124 246 135 53 chr11 47164658 47164952 -74678904 - MTD LTR MaLR -75 344 12 2 944 288 378 109 0 chr11 47165110 47165311 -74678545 - MIR SINE MIR -34 228 6 2 944 191 260 40 0 chr11 47165514 47165564 -74678292 + MIR SINE MIR 205 256 -6 2 944 214 106 0 78 chr11 47166944 47166995 -74676861 + (TATAG)n Simple_repeat Simple_repeat 3 49 0 2 944 3456 77 0 8 chr11 47170450 47170933 -74672923 - L1Md_F2 LINE L1 -23 6559 6081 2 944 846 360 116 8 chr11 47171621 47172105 -74671751 + Arthur1 DNA Tip100 221 756 -3191 2 944 291 339 26 9 chr11 47172613 47172729 -74671127 - MER5A DNA MER1_type -28 161 44 2 944 22 0 0 0 chr11 47173137 47173159 -74670697 + AT_rich Low_complexity Low_complexity 1 22 0 2 944 1519 85 0 26 chr11 47173425 47173654 -74670202 - L1Md_F2 LINE L1 0 6582 6360 2 944 565 273 85 0 chr11 47174550 47174726 -74669130 + Lx8 LINE L1 7047 7237 -236 2 944 772 181 27 27 chr11 47174764 47174912 -74668944 - B1_Mus1 SINE Alu 0 148 1 2 944 5445 53 15 3 chr11 47174963 47175649 -74668207 - L1Md_F2 LINE L1 -2 6580 5887 2 944 488 284 121 19 chr11 47175649 47175864 -74667992 + Lx8 LINE L1 7232 7468 -5 2 944 680 265 154 18 chr11 47176396 47176851 -74667005 + L1_Mur3 LINE L1 5231 5779 -521 2 944 21 36 0 0 chr11 47177407 47177435 -74666421 + AT_rich Low_complexity Low_complexity 1 28 0 2 944 251 264 31 189 chr11 47179145 47179304 -74664552 - B1F SINE Alu -9 140 7 2 944 312 341 55 31 chr11 47179185 47179312 -74664544 - ID_B1 SINE B4 -15 209 80 2 944 500 178 9 0 chr11 47179356 47179463 -74664393 + (TA)n Simple_repeat Simple_repeat 1 108 0 2 944 312 27 0 0 chr11 47179490 47179527 -74664329 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 944 337 322 133 45 chr11 47179686 47179995 -74663861 + MTEa LTR MaLR 11 357 -13 2 944 180 333 60 40 chr11 47181919 47182019 -74661837 - MIR3 SINE MIR -22 186 85 2 944 1371 242 62 50 chr11 47182279 47182701 -74661155 - Lx6 LINE L1 -26 7434 7008 2 944 275 209 0 0 chr11 47182717 47182760 -74661096 - B1F SINE Alu -58 91 49 2 944 245 302 100 33 chr11 47182776 47182896 -74660960 - MIR SINE MIR -54 208 81 2 944 21 0 0 0 chr11 47183360 47183381 -74660475 + AT_rich Low_complexity Low_complexity 1 21 0 2 944 653 271 5 94 chr11 47183423 47183635 -74660221 + B3A SINE B2 2 194 -4 2 944 799 278 27 54 chr11 47183866 47184087 -74659769 - B3A SINE B2 0 216 2 2 944 355 315 54 9 chr11 47184645 47184757 -74659099 + PB1D7 SINE Alu 3 119 -1 2 944 510 17 0 0 chr11 47185458 47185517 -74658339 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 945 21 0 0 0 chr11 47186244 47186265 -74657591 + AT_rich Low_complexity Low_complexity 1 21 0 2 945 7237 85 7 2 chr11 47187319 47188883 -74654973 + L1_Mus2 LINE L1 4993 6566 0 2 945 418 240 36 22 chr11 47189854 47190135 -74653721 + (TCTA)n Simple_repeat Simple_repeat 1 285 0 2 945 189 0 0 0 chr11 47190232 47190253 -74653603 + (TCTA)n Simple_repeat Simple_repeat 2 22 0 2 945 186 167 0 0 chr11 47191245 47191281 -74652575 + (CCCTA)n Simple_repeat Simple_repeat 3 38 0 2 945 180 0 0 0 chr11 47192255 47192275 -74651581 + (A)n Simple_repeat Simple_repeat 1 20 0 2 945 207 0 0 0 chr11 47194003 47194026 -74649830 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 945 422 309 47 62 chr11 47194257 47194450 -74649406 - MIR3 SINE MIR -3 205 16 2 945 182 347 52 21 chr11 47194546 47194643 -74649213 + MIR SINE MIR 77 176 -86 2 945 466 301 69 27 chr11 47196008 47196196 -74647660 + B4A SINE B4 1 196 -96 2 945 252 0 0 0 chr11 47196321 47196349 -74647507 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 945 4403 58 20 0 chr11 47196430 47196978 -74646878 - L1_Mus1 LINE L1 0 6567 6009 2 945 1008 245 41 38 chr11 47197869 47198136 -74645720 + B4A SINE B4 1 268 -24 2 945 252 86 0 0 chr11 47198166 47198201 -74645655 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 945 22 0 0 0 chr11 47198265 47198287 -74645569 + AT_rich Low_complexity Low_complexity 1 22 0 2 945 411 315 104 16 chr11 47198311 47198643 -74645213 - Lx9 LINE L1 -28 7616 7128 2 945 599 261 0 24 chr11 47198643 47198808 -74645048 + L1_Rod LINE L1 5682 5842 -5 2 945 400 286 9 39 chr11 47199112 47199295 -74644561 + L1MA4 LINE L1 5696 5873 -427 2 945 469 249 38 16 chr11 47199971 47200216 -74643640 - L1M3 LINE L1 -1210 4930 4678 3 945 504 274 173 24 chr11 47200222 47200476 -74643380 + B4 SINE B4 1 292 0 3 945 512 89 13 0 chr11 47200495 47200574 -74643282 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 945 645 272 100 20 chr11 47200574 47200975 -74642881 - L1M3 LINE L1 -1456 4684 4252 3 945 314 331 64 8 chr11 47201368 47201493 -74642363 + ORR1E LTR MaLR 7 138 -221 3 945 735 46 18 9 chr11 47201532 47201641 -74642215 + (TTC)n Simple_repeat Simple_repeat 3 112 0 3 945 632 328 60 4 chr11 47203073 47203321 -74640535 - MER58B DNA MER1_type -6 335 74 3 945 243 167 106 0 chr11 47203351 47203417 -74640439 - Lx9 LINE L1 -1 7643 7571 3 945 360 299 142 31 chr11 47203450 47203612 -74640244 - B3A SINE B2 -18 180 1 3 945 417 182 127 35 chr11 47203882 47204024 -74639832 - Lx LINE L1 -3 7047 6893 3 945 4797 104 0 13 chr11 47204040 47204724 -74639132 - Lx LINE L1 -2 6652 5978 3 945 811 152 170 22 chr11 47204724 47204789 -74639067 + L1_Mur2 LINE L1 4662 4726 -1151 3 945 309 26 0 0 chr11 47204789 47204827 -74639029 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 945 811 152 170 22 chr11 47204827 47204943 -74638913 + L1_Mur2 LINE L1 4727 4870 -1007 3 945 2026 89 14 3 chr11 47205006 47205298 -74638558 - L1_Mus3 LINE L1 -3 6635 6341 3 945 2680 99 2 0 chr11 47205306 47205701 -74638155 + L1_Mus3 LINE L1 5935 6330 -306 3 945 5620 113 31 3 chr11 47205699 47206768 -74637088 + L1_Mus4 LINE L1 4863 5958 -678 3 945 531 231 72 23 chr11 47206854 47206987 -74636869 - RLTR20B3 LTR ERVK -27 550 409 3 945 728 286 75 12 chr11 47207113 47207446 -74636410 - Lx8 LINE L1 -293 7180 6827 3 945 334 277 138 46 chr11 47207466 47207640 -74636216 + Lx8 LINE L1 7225 7414 -59 3 945 443 368 7 0 chr11 47207923 47208067 -74635789 + MER44D DNA MER2_type 18 162 -543 3 945 419 277 102 13 chr11 47208068 47208225 -74635631 + MER44D DNA MER2_type 496 666 -39 3 945 396 309 187 33 chr11 47208391 47208813 -74635043 + Lx8 LINE L1 6912 7398 -75 3 945 258 324 99 31 chr11 47209064 47209277 -74634579 - MIRb SINE MIR -43 225 10 3 945 194 308 25 25 chr11 47209368 47209448 -74634408 - MIRc SINE MIR -19 249 170 3 945 903 272 164 25 chr11 47209850 47210204 -74633652 - MTD LTR MaLR -14 405 3 3 945 234 273 77 33 chr11 47210221 47210312 -74633544 - MER63A DNA AcHobo -98 112 18 3 945 577 131 14 35 chr11 47210487 47210629 -74633227 + (TCTA)n Simple_repeat Simple_repeat 1 139 0 3 945 389 260 5 43 chr11 47210683 47210868 -74632988 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 3 945 613 82 21 0 chr11 47210888 47210985 -74632871 + (TCTA)n Simple_repeat Simple_repeat 1 99 0 3 945 691 254 72 5 chr11 47211679 47211873 -74631983 + B3 SINE B2 1 207 -9 3 945 1784 309 113 29 chr11 47212089 47213519 -74630337 + L1MB3 LINE L1 18 1567 -4817 3 945 505 289 85 55 chr11 47213856 47214384 -74629472 + L1MB3 LINE L1 1957 2500 -3884 3 945 3694 146 46 5 chr11 47214792 47214942 -74628914 + Lx4B LINE L1 2711 2866 -3011 3 945 2955 92 9 14 chr11 47214942 47215363 -74628493 + L1Md_F2 LINE L1 6162 6580 -2 3 945 3694 146 46 5 chr11 47215363 47215951 -74627905 + Lx4B LINE L1 2867 3478 -2399 3 945 250 24 75 97 chr11 47215958 47216051 -74627805 + A-rich Low_complexity Low_complexity 1 91 0 3 945 482 104 0 13 chr11 47216063 47216141 -74627715 + Lx4B LINE L1 3471 3547 -2330 3 945 5689 196 54 19 chr11 47216143 47218352 -74625504 + Lx4B LINE L1 4751 7054 -4 3 945 481 272 184 0 chr11 47218406 47218531 -74625325 + B3 SINE B2 6 153 -63 3 945 354 333 70 9 chr11 47218595 47218822 -74625034 + L1MB3 LINE L1 2523 2763 -3616 3 945 624 299 96 12 chr11 47218954 47219383 -74624473 + L1MB3 LINE L1 4809 5273 -1103 3 945 1127 281 117 33 chr11 47219383 47220177 -74623679 + L1MB3 LINE L1 5495 6355 -64 3 945 23 0 0 0 chr11 47220192 47220215 -74623641 + AT_rich Low_complexity Low_complexity 1 23 0 3 945 229 287 0 33 chr11 47220372 47220462 -74623394 + CT-rich Low_complexity Low_complexity 3 89 0 3 945 5323 83 30 0 chr11 47220462 47221161 -74622695 + L1Md_F LINE L1 454 1154 -5462 3 945 1012 75 0 18 chr11 47221161 47221325 -74622531 + L1Md_F3 LINE L1 6424 6584 0 3 945 7490 79 1 8 chr11 47221325 47222388 -74621468 + L1Md_F LINE L1 1155 2231 -3652 3 945 5399 71 3 14 chr11 47222378 47223107 -74620749 + L1Md_F LINE L1 3455 4175 -1708 3 945 328 281 95 5 chr11 47223469 47223591 -74620265 + PB1D10 SINE Alu 13 148 -1 3 945 546 143 0 0 chr11 47223677 47223768 -74620088 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 945 666 300 35 50 chr11 47224246 47224446 -74619410 + B3A SINE B2 2 198 0 3 945 20806 128 39 5 chr11 47224449 47227702 -74616154 + L1VL1 LINE L1 231 3935 -1948 3 945 1419 79 10 26 chr11 47227702 47227897 -74615959 + B2_Mm1t SINE B2 2 193 0 3 945 20806 133 22 3 chr11 47227897 47228621 -74615235 + L1VL1 LINE L1 3936 4655 -1228 3 945 5704 78 32 12 chr11 47228623 47229307 -74614549 + L1Md_F2 LINE L1 5803 6481 -101 3 945 231 36 0 0 chr11 47229307 47229335 -74614521 + (TGGG)n Simple_repeat Simple_repeat 2 29 0 3 945 5704 78 32 12 chr11 47229335 47229410 -74614446 + L1Md_F2 LINE L1 6482 6576 -6 3 945 442 184 26 9 chr11 47229410 47229525 -74614331 - RCHARR1 DNA MER1_type -83 891 775 3 945 902 217 79 9 chr11 47229540 47229768 -74614088 - RCHARR1 DNA MER1_type -517 457 214 3 945 952 136 17 11 chr11 47229820 47229999 -74613857 + CT-rich Low_complexity Low_complexity 1 180 0 3 945 592 79 10 36 chr11 47229999 47230107 -74613749 - L1_Mus2 LINE L1 0 6582 6474 3 945 1203 264 83 6 chr11 47230201 47230336 -74613520 - MTD LTR MaLR -69 350 198 3 945 324 0 0 0 chr11 47230336 47230372 -74613484 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 945 1203 264 83 6 chr11 47230372 47230560 -74613296 - MTD LTR MaLR -222 197 2 3 945 679 321 11 35 chr11 47231203 47231445 -74612411 + MER47A DNA MER2_type 81 314 -52 3 945 680 288 37 60 chr11 47231445 47231663 -74612193 + B3 SINE B2 1 213 -3 3 945 679 321 11 35 chr11 47231663 47231704 -74612152 + MER47A DNA MER2_type 315 356 -10 3 945 253 250 14 0 chr11 47231707 47231779 -74612077 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 945 873 276 91 25 chr11 47232044 47232319 -74611537 + MTEa LTR MaLR 1 293 -86 3 945 272 327 19 9 chr11 47232315 47232423 -74611433 + Charlie12 DNA MER1_type 2634 2742 -131 3 945 312 268 34 23 chr11 47232517 47232605 -74611251 + MTEa LTR MaLR 289 377 -2 3 945 1985 137 241 30 chr11 47232855 47233323 -74610533 + RLTR6_Mm LTR ERV1 37 603 -51 3 945 65889 33 13 0 chr11 47233324 47241004 -74602852 + RLTR6-int LTR ERV1 1 7778 0 3 945 225 242 204 39 chr11 47241012 47241115 -74602741 + RLTR6_Mm LTR ERV1 3 122 -532 3 945 1003 127 244 58 chr11 47241117 47241392 -74602464 + RLTR6_Mm LTR ERV1 37 362 -292 3 945 39501 7 0 1 chr11 47241392 47247365 -74596491 + L1Md_A LINE L1 1 5586 -297 3 945 9514 2 2 6 chr11 47247365 47248365 -74595491 + L1Md_A LINE L1 5587 6582 0 3 945 319 77 0 0 chr11 47248389 47248428 -74595428 - L1_Mus3 LINE L1 -641 5997 5959 3 945 207 0 0 0 chr11 47248428 47248451 -74595405 + (A)n Simple_repeat Simple_repeat 1 23 0 3 945 865 124 44 20 chr11 47248451 47248667 -74595189 + RLTR6_Mm LTR ERV1 327 592 -62 3 945 2697 212 36 43 chr11 47248717 47249117 -74594739 + RMER15 LTR ERVL 2 407 -168 3 945 225 0 0 0 chr11 47249117 47249142 -74594714 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 945 1253 43 0 0 chr11 47249142 47249280 -74594576 - B1_Mm SINE Alu -9 138 1 3 945 2697 212 36 43 chr11 47249280 47249456 -74594400 + RMER15 LTR ERVL 408 574 -1 3 945 342 314 75 41 chr11 47249459 47249605 -74594251 + B4 SINE B4 73 223 -69 3 945 439 348 49 7 chr11 47249656 47249798 -74594058 + RSINE1 SINE B4 2 149 -16 3 945 647 73 45 0 chr11 47249816 47249926 -74593930 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 3 945 728 22 11 0 chr11 47250000 47250090 -74593766 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 3 945 260 217 50 0 chr11 47252730 47252790 -74591066 + (TATG)n Simple_repeat Simple_repeat 4 66 0 3 945 203 250 71 0 chr11 47253018 47253074 -74590782 - L3 LINE CR1 -3471 1018 959 3 945 1145 287 55 23 chr11 47254491 47254837 -74589019 + ORR1E LTR MaLR 1 357 -2 3 945 615 39 0 0 chr11 47254958 47255036 -74588820 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 3 945 743 337 81 26 chr11 47256562 47256833 -74587023 - B4 SINE B4 -6 286 1 3 945 276 158 193 0 chr11 47257148 47257205 -74586651 + ID4 SINE ID 12 79 -4 3 945 188 264 18 36 chr11 47257559 47257614 -74586242 + MIRb SINE MIR 78 131 -137 3 945 516 128 38 19 chr11 47258223 47258382 -74585474 + (TA)n Simple_repeat Simple_repeat 2 163 0 3 945 198 0 0 0 chr11 47258382 47258404 -74585452 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 945 347 136 25 0 chr11 47258798 47258879 -74584977 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 3 945 770 265 32 11 chr11 47258884 47259071 -74584785 - B3A SINE B2 -7 191 1 3 945 539 136 0 64 chr11 47260098 47260208 -74583648 - Lx4A LINE L1 0 7058 6956 3 945 441 0 0 0 chr11 47260334 47260383 -74583473 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 945 237 234 15 30 chr11 47261068 47261134 -74582722 + MLT1A1 LTR MaLR 1 65 -343 3 945 282 315 0 18 chr11 47261252 47261361 -74582495 + CT-rich Low_complexity Low_complexity 1 107 0 3 945 233 322 55 11 chr11 47261517 47261608 -74582248 - MER58A DNA MER1_type -56 168 74 3 945 273 89 0 0 chr11 47261613 47261658 -74582198 + (T)n Simple_repeat Simple_repeat 1 45 0 3 945 279 104 0 0 chr11 47261848 47261896 -74581960 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 3 945 26 30 0 0 chr11 47262455 47262488 -74581368 + AT_rich Low_complexity Low_complexity 1 33 0 3 945 270 56 0 0 chr11 47262571 47262607 -74581249 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 945 494 219 6 2 chr11 47262622 47262722 -74581134 - RSINE1 SINE B4 -183 109 7 3 945 256 336 68 104 chr11 47263095 47263258 -74580598 + RSINE1 SINE B4 2 158 -7 3 945 324 0 0 0 chr11 47263760 47263796 -74580060 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 945 255 316 0 13 chr11 47264135 47264212 -74579644 + MTEb LTR MaLR 287 362 -17 3 945 250 325 46 11 chr11 47264252 47264339 -74579517 - B3 SINE B2 -26 190 101 3 945 447 289 50 12 chr11 47264906 47265067 -74578789 + Charlie16a DNA MER1_type 174 340 -2 3 945 420 20 0 0 chr11 47265173 47265222 -74578634 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 3 945 360 203 81 0 chr11 47265536 47265610 -74578246 - ID4 SINE ID -3 80 1 3 945 202 139 28 0 chr11 47265923 47265959 -74577897 + GA-rich Low_complexity Low_complexity 2 38 0 3 945 25 51 0 0 chr11 47266590 47266629 -74577227 + AT_rich Low_complexity Low_complexity 1 39 0 3 945 633 294 45 0 chr11 47266651 47266828 -74577028 - B3A SINE B2 -13 185 1 3 945 654 210 8 8 chr11 47267026 47267151 -74576705 - RMER4B LTR ERVK 0 585 461 3 945 1536 22 0 0 chr11 47267153 47267333 -74576523 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 945 702 133 0 0 chr11 47267333 47267446 -74576410 + (GAA)n Simple_repeat Simple_repeat 1 113 0 3 945 1977 204 92 39 chr11 47267446 47267914 -74575942 - RMER4B LTR ERVK -92 493 1 3 945 589 310 47 5 chr11 47268391 47268605 -74575251 + ID_B1 SINE B4 2 224 0 3 945 387 134 37 0 chr11 47268736 47268818 -74575038 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 945 232 306 84 92 chr11 47269687 47269806 -74574050 + PB1D9 SINE Alu 1 118 -2 3 945 537 312 14 34 chr11 47269732 47269878 -74573978 + B4 SINE B4 149 291 -1 3 945 375 353 27 11 chr11 47269933 47270119 -74573737 - RMER30 DNA MER1_type -9 193 5 4 945 279 0 0 0 chr11 47271769 47271800 -74572056 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 945 384 243 17 70 chr11 47271803 47271918 -74571938 + B3 SINE B2 98 206 -10 4 945 387 0 0 0 chr11 47273132 47273175 -74570681 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 945 450 255 113 2 chr11 47273189 47273324 -74570532 - B3A SINE B2 -62 154 6 4 945 1190 65 0 0 chr11 47273535 47273673 -74570183 + B1_Mm SINE Alu 2 139 -8 4 945 288 0 0 0 chr11 47273673 47273705 -74570151 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 945 936 178 0 0 chr11 47274148 47274328 -74569528 + GA-rich Low_complexity Low_complexity 1 180 0 4 945 376 292 93 5 chr11 47274904 47275097 -74568759 + L1MC5 LINE L1 7012 7221 -740 4 945 582 257 113 81 chr11 47275185 47275371 -74568485 - B3A SINE B2 -2 196 5 4 945 498 83 0 0 chr11 47275386 47275458 -74568398 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 4 945 31984 38 1 3 chr11 47275461 47281918 -74561938 - L1Md_T LINE L1 0 6585 41 4 945 3456 162 82 26 chr11 47281922 47282745 -74561111 - Lx2 LINE L1 -14 6983 5791 4 945 3715 164 39 22 chr11 47282729 47283448 -74560408 + Lx2 LINE L1 5056 5786 -97 4 945 543 321 61 4 chr11 47284019 47284297 -74559559 - L1MD2 LINE L1 -110 6249 5956 4 945 214 195 0 24 chr11 47284781 47284823 -74559033 + CT-rich Low_complexity Low_complexity 4 44 0 4 945 1114 82 7 0 chr11 47284823 47284970 -74558886 - B1_Mus1 SINE Alu 0 148 1 4 945 2518 70 0 3 chr11 47284982 47285314 -74558542 - L1Md_F2 LINE L1 0 6582 6252 4 945 22 0 0 0 chr11 47285716 47285738 -74558118 + AT_rich Low_complexity Low_complexity 1 22 0 4 945 918 72 25 32 chr11 47286464 47286622 -74557234 - L1_Mus3 LINE L1 0 6638 6482 4 945 206 354 57 26 chr11 47286780 47286930 -74556926 - MIRb SINE MIR -72 196 47 4 945 296 252 103 17 chr11 47287595 47287712 -74556144 - MER3 DNA MER1_type -4 205 79 4 945 448 233 22 0 chr11 47288030 47288120 -74555736 - RSINE1 SINE B4 -69 96 5 4 945 367 186 21 0 chr11 47288715 47288812 -74555044 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 945 853 236 14 42 chr11 47288908 47289125 -74554731 + B3 SINE B2 1 211 -5 4 945 300 239 0 56 chr11 47289475 47289546 -74554310 + RSINE1 SINE B4 10 76 -89 4 945 1072 258 123 12 chr11 47290569 47290903 -74552953 - MTD LTR MaLR -14 405 35 4 945 507 230 92 23 chr11 47291275 47291361 -74552495 + Lx9 LINE L1 7405 7497 -147 4 945 225 0 0 0 chr11 47291361 47291386 -74552470 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 945 507 230 92 23 chr11 47291386 47291517 -74552339 + Lx9 LINE L1 7498 7636 -8 4 945 282 280 13 0 chr11 47291542 47291617 -74552239 + ID2 SINE ID 3 78 -5 4 945 872 300 9 132 chr11 47292048 47292374 -74551482 + B4 SINE B4 5 290 -2 4 945 625 291 53 76 chr11 47293669 47293970 -74549886 + MTE2a LTR MaLR 6 299 -80 4 945 655 300 26 34 chr11 47294120 47294339 -74549517 - B3A SINE B2 -2 214 2 4 945 330 26 0 0 chr11 47294823 47294862 -74548994 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 945 22 35 0 0 chr11 47296129 47296158 -74547698 + AT_rich Low_complexity Low_complexity 1 29 0 4 945 482 205 169 23 chr11 47296443 47296573 -74547283 + B1_Mur2 SINE Alu 1 149 0 4 945 272 324 179 37 chr11 47297322 47297540 -74546316 + MIRb SINE MIR 13 267 -1 4 945 216 0 0 0 chr11 47297956 47297980 -74545876 + (A)n Simple_repeat Simple_repeat 1 24 0 4 945 3948 98 20 86 chr11 47297980 47298772 -74545084 - RMER17A LTR ERVK -11 740 1 4 945 292 232 43 0 chr11 47298832 47298901 -74544955 + B3 SINE B2 2 73 -143 4 945 206 325 49 12 chr11 47299745 47299826 -74544030 - MIRb SINE MIR -56 212 129 4 945 254 308 43 11 chr11 47300895 47300987 -74542869 + MLT1A0 LTR MaLR 263 357 -8 4 945 195 258 81 0 chr11 47301149 47301211 -74542645 - L3 LINE CR1 -228 4261 4195 4 945 444 37 0 0 chr11 47301765 47301819 -74542037 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 945 646 286 121 10 chr11 47302102 47302300 -74541556 - B4 SINE B4 -70 222 3 4 945 234 297 0 0 chr11 47303173 47303237 -74540619 + ID4_ SINE ID 1 64 -19 4 945 297 75 0 0 chr11 47303237 47303277 -74540579 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 945 507 33 0 0 chr11 47303281 47303342 -74540514 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 945 308 217 11 0 chr11 47304305 47304397 -74539459 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 945 352 283 59 29 chr11 47304397 47304499 -74539357 - PB1D9 SINE Alu -9 111 7 4 945 1460 21 16 5 chr11 47304516 47304703 -74539153 - L1Md_F3 LINE L1 -2 6582 6394 4 945 25 51 0 0 chr11 47304707 47304746 -74539110 + AT_rich Low_complexity Low_complexity 1 39 0 4 945 445 298 91 8 chr11 47304770 47304902 -74538954 - RSINE1 SINE B4 -14 151 9 4 945 29 0 0 0 chr11 47305046 47305075 -74538781 + AT_rich Low_complexity Low_complexity 1 29 0 4 945 1504 150 4 26 chr11 47305075 47305348 -74538508 - Lx4A LINE L1 -291 6767 6501 4 945 2090 121 9 0 chr11 47305349 47305696 -74538160 + L1_Mur2 LINE L1 5106 5455 -422 4 945 3967 45 2 0 chr11 47305696 47306398 -74537458 - L1Md_F2 LINE L1 -500 6082 5380 4 945 4117 37 0 0 chr11 47306398 47306883 -74536973 + L1Md_F2 LINE L1 6098 6582 0 4 945 979 115 0 1 chr11 47306884 47307047 -74536809 + L1_Mur2 LINE L1 5447 5609 -271 4 945 341 350 98 22 chr11 47307071 47307412 -74536444 - L1M3e LINE L1 -3422 3681 3306 4 945 431 274 53 23 chr11 47307995 47308126 -74535730 - B1F SINE Alu -13 136 2 4 945 198 71 0 0 chr11 47308411 47308439 -74535417 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 945 371 308 178 28 chr11 47308440 47308654 -74535202 - B4A SINE B4 -23 269 24 4 945 33 25 0 0 chr11 47308804 47308844 -74535012 + AT_rich Low_complexity Low_complexity 1 40 0 4 945 1092 91 0 0 chr11 47308962 47309105 -74534751 - B1_Mm SINE Alu 0 147 5 4 945 394 293 14 43 chr11 47309186 47309325 -74534531 - L1M3e LINE L1 -5112 1918 1784 4 945 1820 130 88 18 chr11 47309511 47309840 -74534016 + RLTR9A2 LTR ERVK 1 352 -31 4 945 29 47 0 0 chr11 47310163 47310206 -74533650 + AT_rich Low_complexity Low_complexity 1 43 0 4 945 1491 130 71 126 chr11 47310247 47310627 -74533229 + RMER16-int LTR ERVK 2083 2441 -4803 4 945 924 48 0 0 chr11 47310633 47310758 -74533098 - L1_Mus2 LINE L1 -621 5945 5821 4 945 2869 67 13 23 chr11 47310758 47311154 -74532702 + L1_Mus2 LINE L1 6167 6558 -8 4 945 11781 133 47 55 chr11 47311174 47311228 -74532628 + ETnERV2-int LTR ERVK 1425 1478 -5928 4 945 3274 48 5 0 chr11 47311228 47311622 -74532234 - MTA_Mm LTR MaLR 0 396 1 4 945 11781 133 47 55 chr11 47311622 47314015 -74529841 + ETnERV2-int LTR ERVK 1479 3854 -3552 4 945 2106 130 26 26 chr11 47314001 47314389 -74529467 + RMER16-int LTR ERVK 3141 3528 -1878 4 945 2027 151 69 6 chr11 47314787 47315147 -74528709 + RLTR9A2 LTR ERVK 1 383 0 4 945 213 175 0 0 chr11 47315475 47315515 -74528341 + CT-rich Low_complexity Low_complexity 3 42 0 4 945 524 267 96 0 chr11 47315528 47315663 -74528193 - B1_Mus1 SINE Alu 0 148 1 4 945 1220 105 11 6 chr11 47315785 47315967 -74527889 - B2_Mm2 SINE B2 -7 188 6 4 945 7197 38 11 1 chr11 47315972 47316887 -74526969 - L1Md_F2 LINE L1 0 6582 5659 4 946 1247 261 84 38 chr11 47321024 47321442 -74522414 + BGLII_B LTR ERVK 5 441 0 4 946 26 0 0 0 chr11 47321932 47321958 -74521898 + AT_rich Low_complexity Low_complexity 1 26 0 4 946 5017 129 18 29 chr11 47322597 47323412 -74520444 - Lx LINE L1 -2 6652 5847 4 946 383 305 158 20 chr11 47323413 47323542 -74520314 - L1MB2 LINE L1 -90 6081 5956 4 946 252 22 0 62 chr11 47323542 47323590 -74520266 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 946 385 248 115 30 chr11 47323590 47323815 -74520041 - L1MB2 LINE L1 -216 5955 5678 4 946 604 317 143 38 chr11 47324174 47324489 -74519367 + ORR1E LTR MaLR 1 348 -11 4 946 2300 56 26 19 chr11 47324753 47325061 -74518795 - L1Md_F3 LINE L1 0 6584 6275 4 946 420 243 18 12 chr11 47325138 47325309 -74518547 - L1MB2 LINE L1 -869 5277 5106 4 946 7419 52 1 5 chr11 47325313 47326763 -74517093 - L1Md_F2 LINE L1 -5 6577 5132 4 946 299 341 87 26 chr11 47326762 47327267 -74516589 - L1MB2 LINE L1 -1034 5106 4571 4 946 852 145 13 243 chr11 47327304 47327678 -74516178 - L1_Mur2 LINE L1 -518 5359 5072 4 946 3971 147 53 57 chr11 47327672 47327850 -74516006 + Lx2 LINE L1 6176 6341 -656 4 946 1819 70 62 0 chr11 47327850 47328108 -74515748 - L1_Mus1 LINE L1 0 6567 6294 4 946 3971 147 53 57 chr11 47328108 47328754 -74515102 + Lx2 LINE L1 6342 6997 0 4 946 226 175 53 0 chr11 47328755 47328812 -74515044 - L1MB2 LINE L1 -1613 4527 4468 4 946 630 306 56 10 chr11 47329001 47329199 -74514657 - B3 SINE B2 -7 209 3 4 946 260 27 27 0 chr11 47329387 47329424 -74514432 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 946 330 80 0 0 chr11 47329940 47329990 -74513866 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 946 420 123 0 0 chr11 47330115 47330188 -74513668 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 946 843 286 38 5 chr11 47330272 47330483 -74513373 - B4 SINE B4 -73 219 2 4 946 4658 30 0 0 chr11 47330538 47331077 -74512779 + L1Md_T LINE L1 6044 6582 0 4 946 196 303 109 20 chr11 47331335 47331436 -74512420 + MIR SINE MIR 141 250 -12 4 946 675 300 10 73 chr11 47331852 47331868 -74511988 - B3A SINE B2 -6 192 177 4 946 198 103 0 0 chr11 47331868 47331897 -74511959 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 946 675 300 10 73 chr11 47331897 47332085 -74511771 - B3A SINE B2 -22 176 1 4 946 287 287 89 45 chr11 47332636 47332793 -74511063 - Tigger8 DNA MER2_type -89 577 414 4 946 282 325 158 25 chr11 47332914 47333110 -74510746 - RMER5 LTR ERV1 -57 477 256 4 946 327 324 95 14 chr11 47334936 47335083 -74508773 + RSINE1 SINE B4 3 161 -4 4 946 382 300 163 33 chr11 47335308 47335553 -74508303 - B4A SINE B4 -14 278 2 4 946 5272 47 5 0 chr11 47335913 47336556 -74507300 + L1Md_F2 LINE L1 5937 6582 0 4 946 1196 211 48 37 chr11 47336757 47337112 -74506744 + RLTR10D LTR ERVK 1 359 0 4 946 1444 269 12 26 chr11 47337247 47337643 -74506213 + MTE2a LTR MaLR 20 419 0 5 946 309 315 39 16 chr11 47337812 47337941 -74505915 + MER58B DNA MER1_type 66 197 -144 5 946 208 264 0 0 chr11 47339845 47339898 -74503958 - L2a LINE L2 -5 3421 3369 5 946 204 347 16 55 chr11 47341130 47341258 -74502598 + L2a LINE L2 3208 3330 -96 5 946 462 304 83 10 chr11 47341349 47341495 -74502361 + ID_B1 SINE B4 1 159 -65 5 946 441 0 0 0 chr11 47341495 47341544 -74502312 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 946 462 304 83 10 chr11 47341544 47341590 -74502266 + ID_B1 SINE B4 160 206 -18 5 946 307 322 117 43 chr11 47341642 47341804 -74502052 - MER96 DNA hAT 0 175 2 5 946 380 308 65 25 chr11 47342105 47342305 -74501551 - MIR SINE MIR -48 214 7 5 946 262 157 129 23 chr11 47342562 47342641 -74501215 - ORR1D1 LTR MaLR -2 382 280 5 946 314 246 117 78 chr11 47342697 47342825 -74501031 - ORR1D1 LTR MaLR -188 171 38 5 946 210 170 21 0 chr11 47343025 47343072 -74500784 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 946 54 16 0 0 chr11 47343531 47343592 -74500264 + AT_rich Low_complexity Low_complexity 1 61 0 5 946 504 117 0 0 chr11 47343790 47343867 -74499989 + (GGA)n Simple_repeat Simple_repeat 3 79 0 5 946 283 312 106 30 chr11 47346334 47346466 -74497390 - MLT1H LTR MaLR -400 149 8 5 946 378 313 6 12 chr11 47346527 47346695 -74497161 - L1M5 LINE L1 -1380 4766 4600 5 946 607 322 82 84 chr11 47346704 47347192 -74496664 + MER92B LTR ERV1 4 490 -146 5 946 678 185 59 7 chr11 47347221 47347357 -74496499 + B1_Mur4 SINE Alu 1 143 -7 5 946 27 49 0 0 chr11 47347575 47347616 -74496240 + AT_rich Low_complexity Low_complexity 1 41 0 5 946 372 94 0 0 chr11 47347621 47347674 -74496182 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 946 567 275 56 7 chr11 47347675 47347818 -74496038 - RSINE1 SINE B4 -14 151 2 5 946 288 291 110 25 chr11 47347863 47348145 -74495711 - L1M5 LINE L1 -1830 4316 4011 5 946 1289 253 117 24 chr11 47348947 47349323 -74494533 + MTD LTR MaLR 8 418 -1 5 946 324 305 73 0 chr11 47350263 47350345 -74493511 + RSINE1 SINE B4 4 91 -74 5 946 360 275 12 0 chr11 47350393 47350473 -74493383 + RSINE1 SINE B4 72 152 -13 5 946 875 231 15 39 chr11 47351715 47351918 -74491938 - B3A SINE B2 0 198 1 5 946 669 264 0 7 chr11 47351943 47352084 -74491772 - B1_Mur2 SINE Alu 0 149 10 5 946 219 357 75 80 chr11 47352977 47353190 -74490666 + MIRb SINE MIR 26 237 -31 5 946 182 363 39 19 chr11 47353894 47353998 -74489858 - MIRb SINE MIR -39 229 124 5 946 266 155 0 33 chr11 47353998 47354058 -74489798 + GA-rich Low_complexity Low_complexity 3 60 0 5 946 486 335 33 0 chr11 47354520 47354672 -74489184 + RSINE1 SINE B4 6 162 -3 5 946 1001 132 6 0 chr11 47354754 47354921 -74488935 + (TTC)n Simple_repeat Simple_repeat 3 170 0 5 946 789 74 16 8 chr11 47355850 47355973 -74487883 + (GAAAA)n Simple_repeat Simple_repeat 2 125 0 5 946 240 35 0 0 chr11 47356253 47356282 -74487574 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 946 336 182 11 22 chr11 47356282 47356372 -74487484 + GA-rich Low_complexity Low_complexity 6 94 0 5 946 423 0 0 0 chr11 47356856 47356903 -74486953 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 946 297 0 0 0 chr11 47356943 47356976 -74486880 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 946 191 325 152 0 chr11 47357016 47357167 -74486689 - MIRc SINE MIR -24 244 71 5 946 617 282 22 49 chr11 47357478 47357627 -74486229 + B3A SINE B2 3 150 -48 5 946 423 0 0 0 chr11 47357627 47357674 -74486182 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 946 617 282 22 49 chr11 47357674 47357707 -74486149 + B3A SINE B2 151 180 -18 5 946 959 226 187 12 chr11 47358415 47358754 -74485102 + MTD LTR MaLR 3 400 -19 5 946 255 334 35 8 chr11 47359029 47359162 -74484694 - MIR3 SINE MIR -3 205 68 5 946 878 131 14 20 chr11 47359493 47359641 -74484215 - B1_Mur2 SINE Alu 0 149 3 5 946 600 301 16 51 chr11 47359656 47359912 -74483944 - L1MD3 LINE L1 -8 7987 7741 5 946 243 0 0 0 chr11 47360375 47360402 -74483454 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 946 1049 234 10 0 chr11 47360505 47360710 -74483146 - MTD LTR MaLR -9 410 204 5 946 828 132 0 0 chr11 47360711 47360877 -74482979 + (TCTA)n Simple_repeat Simple_repeat 1 166 0 5 946 889 234 16 5 chr11 47360878 47361071 -74482785 - MTD LTR MaLR -224 195 1 5 946 225 0 0 0 chr11 47361581 47361606 -74482250 + (T)n Simple_repeat Simple_repeat 1 25 0 5 946 1338 256 21 57 chr11 47361878 47362300 -74481556 - MTD LTR MaLR 0 419 13 5 946 1382 132 0 0 chr11 47362368 47362581 -74481275 - Lx4A LINE L1 -1239 5819 5607 5 946 3489 163 69 3 chr11 47362586 47363196 -74480660 + Lx4A LINE L1 6397 7046 -12 5 946 522 299 164 56 chr11 47363499 47363712 -74480144 - B4A SINE B4 0 292 57 5 946 437 277 21 28 chr11 47363708 47363849 -74480007 - MTD LTR MaLR -278 141 2 5 946 250 250 122 24 chr11 47364581 47364663 -74479193 + L2c LINE L2 3294 3383 -4 5 946 184 321 74 0 chr11 47364664 47364745 -74479111 + MIRb SINE MIR 101 187 -81 5 946 324 324 161 6 chr11 47366247 47366265 -74477591 - B3 SINE B2 -11 205 5 5 946 775 301 0 0 chr11 47366265 47366421 -74477435 - RSINE1 SINE B4 -4 161 6 5 946 313 263 20 16 chr11 47366899 47366975 -74476881 + B4 SINE B4 235 288 -4 5 946 320 323 0 0 chr11 47366994 47367093 -74476763 + GA-rich Low_complexity Low_complexity 2 100 0 5 946 257 314 23 0 chr11 47368722 47368808 -74475048 + GA-rich Low_complexity Low_complexity 3 90 0 5 946 227 291 75 75 chr11 47369426 47369519 -74474337 + LTR16D LTR ERVL 3 95 -556 5 946 959 237 8 24 chr11 47369573 47369828 -74474028 + RMER15 LTR ERVL 10 260 -315 5 946 485 307 74 52 chr11 47370655 47370885 -74472971 + MER58A DNA MER1_type 20 317 -24 5 946 527 323 0 8 chr11 47372555 47372686 -74471170 + RSINE1 SINE B4 6 135 -30 5 946 22 56 0 0 chr11 47374128 47374164 -74469692 + AT_rich Low_complexity Low_complexity 1 36 0 5 946 282 183 0 0 chr11 47374655 47374726 -74469130 + (TATG)n Simple_repeat Simple_repeat 3 73 0 5 946 1574 42 16 0 chr11 47374863 47375053 -74468803 + B2_Mm2 SINE B2 3 195 0 5 946 1104 91 0 0 chr11 47375055 47375198 -74468658 + B1_Mus1 SINE Alu 1 143 -5 5 946 207 88 0 0 chr11 47375647 47375681 -74468175 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 5 946 1283 165 9 0 chr11 47377185 47377403 -74466453 + URR1B DNA MER1_type 6 225 0 5 946 385 242 109 122 chr11 47377614 47377925 -74465931 - MER33 DNA MER1_type -1 323 17 5 946 270 95 0 0 chr11 47378159 47378201 -74465655 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 5 946 528 16 0 0 chr11 47378757 47378818 -74465038 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 946 276 30 0 0 chr11 47379289 47379322 -74464534 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 946 713 264 0 13 chr11 47379374 47379524 -74464332 - B1_Mur1 SINE Alu -1 148 1 5 946 434 314 71 63 chr11 47380321 47380783 -74463073 + LTR37B LTR ERV1 3 468 0 5 946 573 15 0 0 chr11 47381155 47381221 -74462635 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 946 1085 83 0 7 chr11 47381294 47381439 -74462417 - B1_Mus1 SINE Alu 0 148 5 5 946 189 74 0 0 chr11 47381655 47381682 -74462174 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5 946 618 99 0 11 chr11 47382555 47382647 -74461209 + B1_Mus2 SINE Alu 3 93 -54 5 946 295 225 42 0 chr11 47382593 47382664 -74461192 + RLTR25B LTR ERVK 441 514 -514 5 946 908 235 14 32 chr11 47383295 47383515 -74460341 - B3 SINE B2 0 216 1 5 946 462 254 8 25 chr11 47383654 47383775 -74460081 - MLT1A1 LTR MaLR -101 307 189 5 946 630 323 36 60 chr11 47383934 47384325 -74459531 - ORR1E LTR MaLR 0 370 4 5 946 7334 86 20 7 chr11 47384420 47385414 -74458442 + L1_Mus3 LINE L1 5631 6637 -1 5 946 317 245 92 0 chr11 47385812 47385910 -74457946 + RMER15 LTR ERVL 39 145 -430 5 946 1089 258 25 32 chr11 47385913 47386197 -74457659 + RMER15 LTR ERVL 292 573 -2 5 946 714 300 16 16 chr11 47386688 47386881 -74456975 - B3A SINE B2 0 198 6 5 946 514 304 98 11 chr11 47387027 47387115 -74456741 + RMER30 DNA MER1_type 2 92 -110 5 946 234 62 0 0 chr11 47387115 47387147 -74456709 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 946 514 304 98 11 chr11 47387147 47387241 -74456615 + RMER30 DNA MER1_type 93 199 -3 5 946 405 0 0 0 chr11 47387327 47387372 -74456484 + (ATATG)n Simple_repeat Simple_repeat 2 46 0 5 946 213 39 0 0 chr11 47387789 47387815 -74456041 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 946 1140 42 0 0 chr11 47387815 47387956 -74455900 + (GA)n Simple_repeat Simple_repeat 2 143 0 5 946 3810 134 32 0 chr11 47389070 47389688 -74454168 - Lx2 LINE L1 -1 6996 6359 5 946 182 390 67 0 chr11 47389791 47389896 -74453960 - MER5A DNA MER1_type -77 112 1 5 946 264 59 0 0 chr11 47390131 47390165 -74453691 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 946 249 196 0 0 chr11 47390170 47390221 -74453635 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 5 946 591 15 0 0 chr11 47391222 47391290 -74452566 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 946 235 371 6 6 chr11 47392634 47392794 -74451062 + (CCA)n Simple_repeat Simple_repeat 1 160 0 5 946 184 364 0 0 chr11 47395317 47395383 -74448473 - L2b LINE L2 -3 3372 3307 5 946 208 171 24 0 chr11 47395634 47395675 -74448181 + CT-rich Low_complexity Low_complexity 1 42 0 5 946 366 330 18 0 chr11 47395705 47395817 -74448039 - ID_B1 SINE B4 -8 216 103 5 946 281 358 50 50 chr11 47395817 47395846 -74448010 - B1F1 SINE Alu -8 141 1 5 946 1965 156 116 0 chr11 47397611 47397964 -74445892 + ORR1B1 LTR MaLR 1 394 0 5 946 312 333 0 77 chr11 47398802 47398919 -74444937 + PB1D10 SINE Alu 1 108 -9 5 946 238 262 68 83 chr11 47400075 47400208 -74443648 + L1MC5 LINE L1 7154 7284 -677 6 946 237 232 0 0 chr11 47401103 47401172 -74442684 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 946 366 335 132 21 chr11 47401248 47401483 -74442373 - B4 SINE B4 -27 265 5 6 946 23 0 0 0 chr11 47401957 47401980 -74441876 + AT_rich Low_complexity Low_complexity 1 23 0 6 946 400 331 24 32 chr11 47402141 47402266 -74441590 - B1F2 SINE Alu -13 136 13 6 946 257 288 73 24 chr11 47402197 47402279 -74441577 - B4 SINE B4 -123 169 84 6 946 683 336 7 43 chr11 47402514 47402816 -74441040 + B4A SINE B4 2 292 0 6 946 451 314 88 41 chr11 47404235 47404577 -74439279 - L1MC1 LINE L1 -28 6305 5948 6 946 851 287 28 7 chr11 47404899 47405183 -74438673 - L1MC1 LINE L1 -450 5883 5594 6 946 237 315 90 0 chr11 47405840 47405929 -74437927 + L2a LINE L2 3326 3422 -4 6 946 477 330 65 17 chr11 47405994 47406225 -74437631 + MamRep137 DNA TcMar? 201 442 -2 6 946 768 251 39 28 chr11 47407435 47407689 -74436167 - Lx9 LINE L1 -171 7473 7217 6 946 1852 251 10 36 chr11 47407678 47408171 -74435685 + Lx9 LINE L1 6760 7239 -405 6 946 1661 221 11 20 chr11 47408626 47408973 -74434883 + ORR1D1 LTR MaLR 1 344 -30 6 946 195 42 0 0 chr11 47413655 47413679 -74430177 + (A)n Simple_repeat Simple_repeat 1 24 0 6 946 550 214 6 114 chr11 47413954 47414112 -74429744 + B1_Mur2 SINE Alu 3 143 -6 6 946 30 0 0 0 chr11 47414112 47414142 -74429714 + AT_rich Low_complexity Low_complexity 1 30 0 6 946 814 253 64 24 chr11 47414202 47414453 -74429403 - RMER5 LTR ERV1 -273 261 1 6 946 1113 195 85 31 chr11 47415713 47415972 -74427884 - MTC LTR MaLR -148 273 1 6 946 288 0 0 0 chr11 47416850 47416882 -74426974 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 946 353 358 114 27 chr11 47417484 47417817 -74426039 - MLT1A LTR MaLR -3 371 10 6 946 1272 164 5 5 chr11 47417821 47418035 -74425821 - URR1B DNA MER1_type -2 223 10 6 946 284 339 44 88 chr11 47418866 47419047 -74424809 - MLT1F2 LTR MaLR -28 652 480 6 946 286 319 41 49 chr11 47419161 47419283 -74424573 - MLT1F2 LTR MaLR -424 136 16 6 946 336 259 62 9 chr11 47419894 47420001 -74423855 + MLT1B LTR MaLR 275 408 0 6 946 1581 147 160 11 chr11 47420162 47420332 -74423524 + RMER17C LTR ERVK 1 221 -189 6 946 1080 60 0 0 chr11 47420332 47420481 -74423375 + (TC)n Simple_repeat Simple_repeat 2 150 0 6 946 1581 147 160 11 chr11 47420481 47420667 -74423189 + RMER17C LTR ERVK 222 410 0 6 946 330 322 25 61 chr11 47420879 47421124 -74422732 + L1MDa LINE L1 148 383 -6157 6 946 240 292 21 42 chr11 47421238 47421381 -74422475 + L1MDa LINE L1 1295 1434 -5106 6 946 385 279 69 6 chr11 47421479 47421652 -74422204 + L1MDa LINE L1 1588 1771 -4862 6 946 392 308 19 0 chr11 47421756 47421860 -74421996 + PB1D9 SINE Alu 1 106 -14 6 946 227 330 0 25 chr11 47422077 47422198 -74421658 + L1MDa LINE L1 2263 2380 -4253 6 946 505 348 34 34 chr11 47422476 47422827 -74421029 - L1MB7 LINE L1 -295 5889 5539 6 946 273 57 0 0 chr11 47422991 47423026 -74420830 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 6 946 429 269 145 9 chr11 47423097 47423318 -74420538 - L1MB7 LINE L1 -1198 4948 4698 6 946 240 346 15 22 chr11 47423362 47423498 -74420358 + L1MDa LINE L1 2546 2680 -3857 6 946 1993 211 50 80 chr11 47423512 47424074 -74419782 - RMER13B LTR ERVK -92 816 272 6 946 1266 194 109 113 chr11 47424093 47424534 -74419322 - RMER17B LTR ERVK -519 439 1 6 946 281 313 62 71 chr11 47424789 47424999 -74418857 + L1MDa LINE L1 2992 3199 -3338 6 946 391 256 129 43 chr11 47425214 47425516 -74418340 + L1MD1 LINE L1 3092 3419 -2727 6 946 272 323 89 106 chr11 47425736 47425916 -74417940 + MLT1C LTR MaLR 289 465 -2 6 946 2762 215 14 2 chr11 47426001 47426564 -74417292 + Lx5 LINE L1 6480 7049 -1 6 946 286 296 87 14 chr11 47426585 47426804 -74417052 + L1MD1 LINE L1 3508 3742 -2404 6 946 328 291 53 58 chr11 47426795 47427021 -74416835 + L1MD1 LINE L1 5636 5860 -382 6 946 832 231 49 5 chr11 47427100 47427304 -74416552 + B3 SINE B2 4 216 0 6 946 626 63 48 20 chr11 47427458 47427604 -74416252 + (TA)n Simple_repeat Simple_repeat 1 150 0 6 946 688 286 184 21 chr11 47428019 47428258 -74415598 + ORR1D2 LTR MaLR 55 332 -38 6 946 395 354 114 70 chr11 47428513 47428741 -74415115 - ORR1E LTR MaLR -132 238 1 6 946 1774 208 46 5 chr11 47429225 47429592 -74414264 + ORR1C2 LTR MaLR 3 384 0 6 946 410 314 94 38 chr11 47429817 47430029 -74413827 - B4A SINE B4 -29 263 40 6 946 312 27 0 0 chr11 47431297 47431334 -74412522 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 946 209 159 23 0 chr11 47431511 47431555 -74412301 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 946 285 214 95 19 chr11 47431896 47432001 -74411855 - L1MC5 LINE L1 -103 7858 7746 6 946 420 248 35 35 chr11 47432220 47432362 -74411494 + MER5A1 DNA MER1_type 9 150 -16 6 946 342 358 118 37 chr11 47432375 47432860 -74410996 - L1MC5 LINE L1 -422 7539 7016 6 946 320 281 95 5 chr11 47435617 47435739 -74408117 + PB1D10 SINE Alu 13 148 -1 6 946 690 122 0 0 chr11 47435825 47435932 -74407924 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 946 684 295 35 50 chr11 47436405 47436605 -74407251 + B3A SINE B2 2 198 0 6 946 28158 127 35 9 chr11 47436607 47439861 -74403995 + L1_Mus3 LINE L1 595 3935 -1948 6 946 1315 87 22 0 chr11 47439861 47440045 -74403811 + B2_Mm2 SINE B2 2 189 -6 6 946 28158 131 17 8 chr11 47440045 47440782 -74403074 + L1_Mus3 LINE L1 3936 4657 -1226 6 946 6009 52 19 8 chr11 47440782 47441552 -74402304 + L1Md_F2 LINE L1 5803 6581 -1 6 946 28158 117 49 5 chr11 47441552 47443466 -74400390 + L1_Mus3 LINE L1 4658 6636 -2 6 946 219 152 0 0 chr11 47444235 47444281 -74399575 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 946 180 97 0 0 chr11 47444795 47444826 -74399030 + (T)n Simple_repeat Simple_repeat 1 31 0 6 946 690 147 0 53 chr11 47444828 47444853 -74399003 - Lx LINE L1 0 6654 6636 6 946 249 33 0 0 chr11 47444853 47444883 -74398973 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 6 946 690 147 0 53 chr11 47444883 47445008 -74398848 - Lx LINE L1 -19 6635 6512 6 946 654 293 35 18 chr11 47445832 47446002 -74397854 + B3 SINE B2 20 192 -24 6 946 29 0 0 0 chr11 47446005 47446034 -74397822 + AT_rich Low_complexity Low_complexity 1 29 0 6 946 2501 67 6 3 chr11 47447288 47447619 -74396237 - MTA_Mm LTR MaLR -64 332 1 6 118 7735 72 9 60 chr11 47447619 47448776 -74395080 - MTA_Mm-int LTR MaLR 0 1098 1 6 947 2963 57 34 5 chr11 47448776 47449161 -74394695 - MTA_Mm LTR MaLR 0 396 1 6 947 318 310 26 26 chr11 47449824 47449940 -74393916 - Arthur1A DNA Tip100 0 177 62 6 947 912 108 0 0 chr11 47450734 47450873 -74392983 + (CAAAG)n Simple_repeat Simple_repeat 1 139 0 6 947 277 346 0 19 chr11 47451253 47451356 -74392500 + GA-rich Low_complexity Low_complexity 2 102 0 6 947 315 233 124 75 chr11 47451677 47451863 -74391993 - L1MD3 LINE L1 0 7995 7801 6 947 250 75 18 36 chr11 47451887 47451942 -74391914 + (TTTG)n Simple_repeat Simple_repeat 4 57 0 6 947 322 293 109 69 chr11 47451948 47452150 -74391706 - L1MD3 LINE L1 -211 7784 7575 6 947 218 321 107 0 chr11 47453000 47453084 -74390772 + L2b LINE L2 2992 3084 -291 6 947 447 284 37 0 chr11 47453608 47453717 -74390139 + PB1D7 SINE Alu 7 119 -1 6 947 598 234 30 91 chr11 47453912 47454142 -74389714 - B3 SINE B2 0 216 1 6 947 307 289 21 53 chr11 47455646 47455741 -74388115 + MER81 DNA AcHobo 19 110 -4 6 947 555 345 0 35 chr11 47456889 47457071 -74386785 + B3A SINE B2 5 181 -17 6 947 192 97 0 0 chr11 47457071 47457102 -74386754 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 947 555 345 0 35 chr11 47457102 47457120 -74386736 + B3A SINE B2 182 198 0 6 947 726 262 29 0 chr11 47457127 47457333 -74386523 + B3 SINE B2 4 215 -1 6 947 197 298 41 73 chr11 47458979 47459102 -74384754 - MIRb SINE MIR -71 197 79 6 947 563 161 0 0 chr11 47459394 47459487 -74384369 - RLTR15 LTR ERVK 0 359 267 6 947 588 250 81 29 chr11 47459540 47459713 -74384143 + MLT1A1 LTR MaLR 227 408 0 6 947 423 283 96 7 chr11 47460458 47460604 -74383252 + MER58A DNA MER1_type 27 185 -39 6 947 249 321 105 18 chr11 47463116 47463230 -74380626 - MIRb SINE MIR -8 260 137 6 947 780 292 4 29 chr11 47463701 47463912 -74379944 - B3A SINE B2 -4 212 4 6 947 21 36 0 0 chr11 47464089 47464117 -74379739 + AT_rich Low_complexity Low_complexity 1 28 0 6 947 337 274 69 77 chr11 47464427 47464802 -74379054 + L1MB8 LINE L1 5801 6172 -6 6 947 2269 92 3 0 chr11 47465080 47465384 -74378472 + L1_Mus2 LINE L1 6262 6566 0 6 947 288 120 0 0 chr11 47465823 47465873 -74377983 + (A)n Simple_repeat Simple_repeat 1 50 0 6 947 349 230 179 24 chr11 47467714 47468004 -74375852 + Lx7 LINE L1 7344 7678 -18 6 947 3833 181 64 7 chr11 47468505 47469256 -74374600 + Lx5 LINE L1 6253 7046 -4 6 947 3335 163 87 83 chr11 47469282 47470177 -74373679 + RMER17A2 LTR ERVK 5 903 -3 6 947 24 0 0 0 chr11 47470187 47470211 -74373645 + AT_rich Low_complexity Low_complexity 1 24 0 6 947 1026 74 0 7 chr11 47470243 47470379 -74373477 + B1_Mus1 SINE Alu 13 147 -1 6 947 691 231 7 0 chr11 47470423 47470566 -74373290 + B1_Mur3 SINE Alu 1 144 -5 6 947 22 35 0 0 chr11 47470848 47470877 -74372979 + AT_rich Low_complexity Low_complexity 1 29 0 6 947 203 147 0 0 chr11 47471330 47471364 -74372492 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 947 279 274 0 0 chr11 47471363 47471425 -74372431 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 947 806 256 15 25 chr11 47471695 47471895 -74371961 + B3A SINE B2 1 198 0 6 947 2067 103 31 82 chr11 47472317 47472678 -74371178 - RMER17A LTR ERVK 0 751 415 6 947 790 61 54 0 chr11 47472678 47472825 -74371031 + (GA)n Simple_repeat Simple_repeat 1 155 0 6 947 2067 66 76 4 chr11 47472825 47473101 -74370755 - RMER17A LTR ERVK -337 414 1 6 947 252 234 0 0 chr11 47473689 47473736 -74370120 - B3A SINE B2 -145 53 7 6 947 237 370 10 29 chr11 47473738 47473841 -74370015 + MIRb SINE MIR 124 224 -44 6 947 242 369 17 43 chr11 47475168 47475284 -74368572 + PB1D10 SINE Alu 4 116 -1 6 947 3035 44 0 0 chr11 47475374 47475741 -74368115 + L1Md_T LINE L1 6214 6580 -2 6 947 225 335 76 48 chr11 47475986 47476196 -74367660 - LTR37B LTR ERV1 -164 304 89 6 947 962 91 7 0 chr11 47476257 47476400 -74367456 + (TATATG)n Simple_repeat Simple_repeat 6 149 0 6 947 223 222 0 24 chr11 47476467 47476550 -74367306 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 947 762 322 67 39 chr11 47476569 47476853 -74367003 - B4A SINE B4 0 292 1 6 947 318 292 0 0 chr11 47477646 47477711 -74366145 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 6 947 944 300 54 36 chr11 47479382 47479659 -74364197 - B4 SINE B4 -8 284 3 6 947 2656 208 29 39 chr11 47479807 47480423 -74363433 + RLTR17 LTR ERVK 1 610 -82 7 947 279 339 60 35 chr11 47480631 47480830 -74363026 + MIRb SINE MIR 13 216 -52 7 947 317 260 27 55 chr11 47482089 47482199 -74361657 + PB1D10 SINE Alu 10 116 -1 7 947 185 338 48 36 chr11 47482283 47482366 -74361490 - L2b LINE L2 -211 3164 3081 7 947 4712 149 120 7 chr11 47482473 47483331 -74360525 - RMER17B LTR ERVK -3 955 1 7 947 359 342 45 13 chr11 47483416 47483573 -74360283 + RSINE1 SINE B4 4 165 0 7 947 24 32 0 0 chr11 47483573 47483604 -74360252 + AT_rich Low_complexity Low_complexity 1 31 0 7 947 1382 240 157 40 chr11 47483689 47484192 -74359664 + RMER4B LTR ERVK 15 576 -9 7 947 259 411 37 19 chr11 47485109 47485270 -74358586 + MER5A DNA MER1_type 1 164 -25 7 947 453 380 9 70 chr11 47485607 47485836 -74358020 - MTEa LTR MaLR -160 219 5 7 947 2540 127 351 53 chr11 47486258 47486514 -74357342 + RMER17D2 LTR ERVK 1 269 -540 7 947 1196 68 0 0 chr11 47486514 47486661 -74357195 - B1_Mus1 SINE Alu 0 148 2 7 947 2540 127 351 53 chr11 47486661 47486728 -74357128 + RMER17D2 LTR ERVK 270 391 -418 7 947 689 23 0 11 chr11 47486728 47486816 -74357040 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 7 947 2540 127 351 53 chr11 47486816 47487114 -74356742 + RMER17D2 LTR ERVK 392 808 -1 7 947 312 336 48 0 chr11 47488253 47488357 -74355499 - PB1D10 SINE Alu -8 109 1 7 947 55 29 0 0 chr11 47488437 47488506 -74355350 + AT_rich Low_complexity Low_complexity 1 69 0 7 947 449 151 0 0 chr11 47488812 47488898 -74354958 - L1_Mm LINE L1 -2254 3629 3544 7 947 719 88 9 17 chr11 47488898 47489014 -74354842 + L1_Mus1 LINE L1 6448 6562 -5 7 947 711 35 0 0 chr11 47489014 47489100 -74354756 + (GA)n Simple_repeat Simple_repeat 2 87 0 7 947 542 308 14 0 chr11 47489588 47489734 -74354122 + RSINE1 SINE B4 6 153 -12 7 947 23 0 0 0 chr11 47489745 47489768 -74354088 + AT_rich Low_complexity Low_complexity 1 23 0 7 947 489 34 0 0 chr11 47490094 47490153 -74353703 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 947 1256 205 66 21 chr11 47490181 47490470 -74353386 + RLTR11A LTR ERVK 1 302 -226 7 947 609 151 9 0 chr11 47490470 47490576 -74353280 + RLTR11A LTR ERVK 419 525 -3 7 947 2785 98 2 10 chr11 47491088 47491489 -74352367 + MTB LTR MaLR 1 398 -2 7 947 329 273 39 0 chr11 47491706 47491783 -74352073 + B4 SINE B4 3 82 -210 7 947 182 357 0 14 chr11 47492019 47492090 -74351766 - MIRb SINE MIR -36 232 163 7 947 195 49 48 24 chr11 47492186 47492228 -74351628 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 7 947 545 385 30 13 chr11 47492327 47492630 -74351226 + MLT1G3 LTR MaLR 4 311 -268 7 947 480 333 119 23 chr11 47492802 47493112 -74350744 - MER74A LTR ERVL -211 347 8 7 947 557 283 75 0 chr11 47493138 47493311 -74350545 + MLT1G3 LTR MaLR 405 590 -5 7 947 222 118 0 0 chr11 47494203 47494237 -74349619 + (TAAG)n Simple_repeat Simple_repeat 2 35 0 7 947 818 277 48 5 chr11 47495025 47495232 -74348624 - B4 SINE B4 -75 217 2 7 947 6308 50 16 0 chr11 47495255 47496091 -74347765 - L1Md_F3 LINE L1 0 6584 5736 7 947 384 311 117 6 chr11 47497004 47497166 -74346690 + MER5A DNA MER1_type 10 189 0 7 947 1677 100 0 8 chr11 47497422 47497663 -74346193 - L1_Mus1 LINE L1 0 6567 6329 7 947 1427 233 78 21 chr11 47497663 47497996 -74345860 - ORR1D2 LTR MaLR -14 356 5 7 947 3327 38 2 2 chr11 47497996 47498392 -74345464 + MTA_Mm LTR MaLR 1 396 0 7 947 1455 190 104 5 chr11 47498714 47499127 -74344729 + L1_Mur1 LINE L1 891 1344 -5640 7 947 2661 191 79 9 chr11 47499124 47499771 -74344085 + L1_Mur1 LINE L1 2427 3120 -2766 7 947 850 122 109 0 chr11 47499771 47499927 -74343929 + L1Md_F2 LINE L1 6398 6570 -12 7 947 2661 191 79 9 chr11 47499927 47499977 -74343879 + L1_Mur1 LINE L1 3121 3173 -2713 7 947 6452 155 26 6 chr11 47500003 47501284 -74342572 + Lx5 LINE L1 4675 5979 -1071 1 947 262 326 90 21 chr11 47501773 47501917 -74341939 + RMER15 LTR ERVL 411 564 -11 2 947 355 250 22 11 chr11 47503120 47503209 -74340647 - PB1 SINE Alu -10 117 28 3 947 543 320 47 50 chr11 47503417 47503542 -74340314 - B4 SINE B4 -47 245 116 4 947 3652 175 27 16 chr11 47503542 47504290 -74339566 + RMER6A LTR ERVK 1 756 0 5 947 543 313 42 47 chr11 47504290 47504378 -74339478 - B4 SINE B4 -177 115 31 4 947 254 341 70 8 chr11 47504764 47504936 -74338920 - MIR SINE MIR -71 197 14 6 947 959 278 95 78 chr11 47505021 47505368 -74338488 - MTD LTR MaLR -14 405 53 7 947 254 354 51 80 chr11 47506522 47507071 -74336785 - L2 LINE L2 -384 3035 2503 8 947 1569 241 38 34 chr11 47507343 47507760 -74336096 - MTD LTR MaLR 0 419 1 9 947 339 113 0 0 chr11 47507768 47507821 -74336035 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 947 200 222 0 0 chr11 47507874 47507910 -74335946 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 1 947 679 103 34 0 chr11 47507916 47508033 -74335823 + (GGGAGA)n Simple_repeat Simple_repeat 1 121 0 1 947 378 230 0 39 chr11 47508056 47508133 -74335723 - ID2 SINE ID -9 74 1 1 947 235 205 45 114 chr11 47508625 47508713 -74335143 + MT2B2 LTR ERVL 155 236 -348 1 947 322 282 12 12 chr11 47508640 47508726 -74335130 + PB1D10 SINE Alu 6 91 -26 1 947 192 40 0 0 chr11 47509860 47509885 -74333971 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1 947 529 273 133 67 chr11 47509925 47510090 -74333766 + ID_B1 SINE B4 37 212 -12 1 947 216 143 0 0 chr11 47510100 47510142 -74333714 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 947 281 263 0 0 chr11 47510211 47510293 -74333563 + MLT1E3 LTR MaLR 544 627 0 1 947 453 64 12 25 chr11 47511256 47511336 -74332520 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 947 477 0 0 0 chr11 47511336 47511388 -74332468 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 947 180 0 0 0 chr11 47511388 47511408 -74332448 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 947 886 286 5 41 chr11 47511431 47511650 -74332206 - ID_B1 SINE B4 -12 212 2 2 947 183 313 73 15 chr11 47512256 47512324 -74331532 + MIRb SINE MIR 30 101 -167 2 947 1026 249 83 26 chr11 47512444 47512720 -74331136 + ORR1D2 LTR MaLR 1 296 -74 2 947 203 0 37 0 chr11 47512720 47512747 -74331109 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 947 1026 249 83 26 chr11 47512747 47512820 -74331036 + ORR1D2 LTR MaLR 297 370 0 2 947 719 345 34 28 chr11 47512820 47513142 -74330714 + MER2 DNA MER2_type 14 337 -8 2 947 369 0 0 0 chr11 47513225 47513266 -74330590 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 947 234 0 0 0 chr11 47513898 47513924 -74329932 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 947 432 0 0 0 chr11 47513968 47514016 -74329840 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 947 251 368 100 93 chr11 47514020 47514299 -74329557 - B4A SINE B4 -9 283 3 3 947 4709 89 9 39 chr11 47516149 47516569 -74327287 - Lx3_Mus LINE L1 -683 6326 5921 3 947 296 18 52 35 chr11 47516569 47516627 -74327229 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 947 4709 82 9 14 chr11 47516627 47517021 -74326835 - Lx3_Mus LINE L1 -1089 5920 5538 3 947 5142 74 3 1 chr11 47517021 47517695 -74326161 + Lx3_Mus LINE L1 6334 7008 -1 3 947 3225 128 21 6 chr11 47517711 47518231 -74325625 - Lx3_Mus LINE L1 0 7009 6482 3 947 367 288 0 17 chr11 47518231 47518351 -74325505 - MLT1A0 LTR MaLR -236 129 12 3 947 334 391 22 7 chr11 47518702 47518841 -74325015 + LTR16A LTR ERVL 297 437 -14 3 947 211 355 55 27 chr11 47519888 47519998 -74323858 + MER5A DNA MER1_type 71 183 -6 3 947 2729 50 0 14 chr11 47520071 47520418 -74323438 - L1Md_F2 LINE L1 -2 6580 6239 3 947 2277 159 22 15 chr11 47520465 47520874 -74322982 + Lx2B LINE L1 6589 7000 0 4 947 261 357 0 0 chr11 47520887 47520943 -74322913 - B3A SINE B2 -25 173 118 4 947 919 261 152 10 chr11 47520968 47521256 -74322600 - MTD LTR MaLR -46 373 19 4 947 23 33 0 0 chr11 47521871 47521901 -74321955 + AT_rich Low_complexity Low_complexity 1 30 0 4 947 207 0 0 0 chr11 47523605 47523628 -74320228 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 947 324 0 0 0 chr11 47523871 47523907 -74319949 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 947 562 207 27 0 chr11 47524496 47524607 -74319249 + B3A SINE B2 2 115 -83 4 947 258 383 53 0 chr11 47525910 47526004 -74317852 + L2a LINE L2 3315 3413 -13 4 947 423 287 9 0 chr11 47526274 47526382 -74317474 - PB1 SINE Alu -14 113 5 4 947 426 263 33 113 chr11 47526411 47526561 -74317295 + ID_B1 SINE B4 87 224 0 4 947 468 0 0 0 chr11 47526609 47526661 -74317195 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 947 251 284 27 18 chr11 47526662 47526773 -74317083 + Lx9 LINE L1 7524 7635 -9 5 947 702 255 0 0 chr11 47526904 47527045 -74316811 - B1_Mur2 SINE Alu -8 141 1 5 947 492 378 7 20 chr11 47527598 47527744 -74316112 - RSINE1 SINE B4 -20 145 2 5 947 980 45 0 57 chr11 47528328 47528469 -74315387 + L1_Mus1 LINE L1 6435 6567 0 5 947 372 278 8 65 chr11 47528729 47528852 -74315004 - PB1D10 SINE Alu 0 117 2 5 947 243 242 48 0 chr11 47531046 47531108 -74312748 + ID4_ SINE ID 3 67 -16 5 947 203 255 83 124 chr11 47532640 47532761 -74311095 + MIR SINE MIR 129 244 -18 5 947 329 274 10 0 chr11 47532990 47533106 -74310750 - L1_Rod LINE L1 -840 5303 5123 5 947 498 250 46 23 chr11 47533158 47533289 -74310567 + B3A SINE B2 1 134 -64 5 947 246 125 0 0 chr11 47533414 47533462 -74310394 + (T)n Simple_repeat Simple_repeat 1 48 0 6 947 503 73 0 0 chr11 47533462 47533530 -74310326 - B1_Mur4 SINE Alu 0 150 83 6 947 4862 70 6 2 chr11 47533841 47534481 -74309375 - L1_Mus4 LINE L1 -6 6630 5988 6 947 441 0 0 0 chr11 47534610 47534659 -74309197 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 6 947 622 318 25 8 chr11 47534721 47534959 -74308897 - Lx8 LINE L1 -253 7220 6979 6 947 1169 285 63 35 chr11 47534967 47535650 -74308206 + L1_Mur3 LINE L1 4263 4964 -916 6 947 367 324 79 32 chr11 47536298 47536499 -74307357 + MIRb SINE MIR 49 262 0 6 947 390 74 0 0 chr11 47536621 47536675 -74307181 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 6 947 392 301 183 0 chr11 47536739 47536925 -74306931 + ID_B1 SINE B4 2 221 -3 6 947 1084 75 0 12 chr11 47537405 47537568 -74306288 - L1Md_F2 LINE L1 -5 6577 6417 6 947 24 53 0 0 chr11 47537589 47537627 -74306229 + AT_rich Low_complexity Low_complexity 1 38 0 7 947 198 71 0 0 chr11 47538230 47538258 -74305598 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 7 947 306 0 0 0 chr11 47538258 47538292 -74305564 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 947 375 121 0 0 chr11 47538292 47538349 -74305507 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 947 240 160 20 20 chr11 47538719 47538770 -74305086 + MTEa LTR MaLR 312 362 -17 7 947 360 0 0 0 chr11 47539421 47539461 -74304395 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 947 312 27 0 0 chr11 47539637 47539674 -74304182 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 947 897 110 0 0 chr11 47540147 47540283 -74303573 + (TTCC)n Simple_repeat Simple_repeat 2 137 0 7 947 1057 99 0 0 chr11 47540313 47540454 -74303402 - B1_Mus2 SINE Alu -6 141 1 7 947 440 111 14 0 chr11 47540614 47540686 -74303170 + (GGGA)n Simple_repeat Simple_repeat 4 76 0 7 947 22758 81 3 4 chr11 47540887 47544181 -74299675 + L1Md_F2 LINE L1 2297 5585 -298 8 947 7368 72 15 6 chr11 47544182 47545169 -74298687 + L1Md_F2 LINE L1 5587 6582 0 8 947 992 135 12 0 chr11 47545604 47545774 -74298082 + (GGAGAA)n Simple_repeat Simple_repeat 3 174 0 8 947 853 169 0 22 chr11 47545777 47545887 -74297969 + polypurine Low_complexity Low_complexity 2 111 0 8 947 1096 111 0 11 chr11 47545887 47546069 -74297787 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 947 853 169 0 22 chr11 47546069 47546111 -74297745 + polypurine Low_complexity Low_complexity 112 152 0 8 947 1058 135 0 6 chr11 47546111 47546290 -74297566 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 8 947 853 169 0 22 chr11 47546290 47546342 -74297514 + polypurine Low_complexity Low_complexity 1 50 0 8 947 1007 147 6 0 chr11 47546342 47546519 -74297337 + GA-rich Low_complexity Low_complexity 3 180 0 8 947 782 143 0 7 chr11 47546519 47546617 -74297239 + (GGA)n Simple_repeat Simple_repeat 3 99 0 8 947 221 322 117 17 chr11 47547029 47547149 -74296707 + MIR SINE MIR 88 219 -43 8 947 500 361 47 80 chr11 47547544 47547908 -74295948 + MLT1D LTR MaLR 59 410 -95 9 947 287 339 103 27 chr11 47548227 47548488 -74295368 + L2a LINE L2 3128 3408 -18 9 947 2445 215 193 115 chr11 47548657 47549481 -74294375 - RMER19B LTR ERVK -14 888 1 9 947 908 212 42 24 chr11 47549553 47549765 -74294091 + B3 SINE B2 1 216 0 9 947 425 343 98 126 chr11 47549903 47550180 -74293676 + B4 SINE B4 10 278 -14 9 947 217 326 48 163 chr11 47550873 47551082 -74292774 + B4 SINE B4 4 188 -104 9 947 1888 75 45 64 chr11 47551168 47551295 -74292561 - L1_Mus2 LINE L1 0 6566 6448 9 947 987 180 171 47 chr11 47551295 47551657 -74292199 - RLTR9E LTR ERVK -2 407 1 9 947 1888 75 45 64 chr11 47551657 47551841 -74292015 - L1_Mus2 LINE L1 -119 6447 6261 9 947 730 255 102 16 chr11 47553079 47553266 -74290590 + B3 SINE B2 1 203 -13 9 947 24 67 0 0 chr11 47553374 47553419 -74290437 + AT_rich Low_complexity Low_complexity 1 45 0 9 947 585 296 168 17 chr11 47553952 47554303 -74289553 + MLT2B4 LTR ERVL 88 491 -65 1 947 942 281 70 28 chr11 47554434 47554789 -74289067 + ORR1D2 LTR MaLR 1 370 0 1 947 388 284 136 23 chr11 47554847 47555067 -74288789 + ERVL-B4-int LTR ERVL 149 393 -5321 1 947 241 244 33 44 chr11 47555278 47555368 -74288488 + RLTR15 LTR ERVK 33 121 -238 1 947 369 188 0 0 chr11 47555370 47555455 -74288401 + GA-rich Low_complexity Low_complexity 3 87 0 1 947 27 0 0 0 chr11 47555699 47555726 -74288130 + AT_rich Low_complexity Low_complexity 1 27 0 1 947 2047 144 29 0 chr11 47555750 47556096 -74287760 - RLTR15 LTR ERVK 0 359 4 1 947 984 346 58 9 chr11 47556301 47556952 -74286904 + ERVL-B4-int LTR ERVL 834 1516 -4198 1 947 2098 284 72 42 chr11 47557029 47558019 -74285837 + ERVL-B4-int LTR ERVL 1648 2666 -3048 1 947 289 235 44 0 chr11 47558032 47558100 -74285756 + ID4_ SINE ID 3 73 -10 1 947 918 318 68 18 chr11 47558131 47558688 -74285168 + ERVL-B4-int LTR ERVL 2865 3449 -2265 1 947 2087 135 45 20 chr11 47558711 47559066 -74284790 - ORR1B2 LTR MaLR 0 367 4 1 947 1663 329 71 22 chr11 47559170 47560080 -74283776 + ERVL-B4-int LTR ERVL 3591 4545 -1122 1 947 327 338 61 14 chr11 47560214 47560361 -74283495 + ERVL-B4-int LTR ERVL 4655 4808 -949 1 947 27 29 0 0 chr11 47560394 47560428 -74283428 + AT_rich Low_complexity Low_complexity 1 34 0 1 947 3363 77 24 1 chr11 47560747 47561382 -74282474 - L1_Mus4 LINE L1 -540 6026 5381 1 947 4163 98 7 2 chr11 47561382 47561978 -74281878 + L1_Mus4 LINE L1 6036 6634 -2 1 947 892 173 8 8 chr11 47561978 47562220 -74281636 + GA-rich Low_complexity Low_complexity 1 242 0 1 947 773 252 110 5 chr11 47562220 47562645 -74281211 + ERVL-B4-int LTR ERVL 5063 5568 -146 1 947 422 289 150 100 chr11 47562738 47563250 -74280606 + MLT2B4 LTR ERVL 19 556 0 1 947 275 293 12 62 chr11 47563976 47564056 -74279800 + PB1D7 SINE Alu 1 76 -44 1 947 556 293 27 22 chr11 47564505 47564690 -74279166 - MER58A DNA MER1_type -8 216 31 1 947 723 350 30 62 chr11 47566187 47566556 -74277300 - ORR1E LTR MaLR -2 357 1 1 947 180 0 0 0 chr11 47567615 47567635 -74276221 + (A)n Simple_repeat Simple_repeat 1 20 0 1 947 229 265 71 24 chr11 47568128 47568213 -74275643 + MLT1L LTR MaLR 504 592 -18 1 947 679 79 17 9 chr11 47568389 47568504 -74275352 + L1_Mus3 LINE L1 6511 6626 -12 1 947 378 0 0 0 chr11 47568504 47568546 -74275310 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 947 234 0 0 0 chr11 47568546 47568571 -74275285 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 947 452 333 15 30 chr11 47568648 47568846 -74275010 - Cheshire DNA MER1_type -2152 268 74 1 947 857 207 91 0 chr11 47569130 47569328 -74274528 - B3 SINE B2 0 216 1 1 947 278 282 14 0 chr11 47569543 47569614 -74274242 + GA-rich Low_complexity Low_complexity 2 73 0 1 947 195 330 69 10 chr11 47570389 47570490 -74273366 - MIRb SINE MIR -88 180 74 1 947 24 0 0 0 chr11 47570667 47570691 -74273165 + AT_rich Low_complexity Low_complexity 1 24 0 1 947 378 0 0 0 chr11 47570922 47570964 -74272892 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 947 510 46 0 0 chr11 47570964 47571028 -74272828 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 947 1294 135 89 41 chr11 47571111 47571381 -74272475 - Lx3A LINE L1 -2 6979 6697 1 947 2212 101 44 0 chr11 47571360 47571698 -74272158 + Lx3A LINE L1 6361 6713 -268 1 947 609 240 183 30 chr11 47571700 47571902 -74271954 - B4A SINE B4 -56 236 4 1 947 1391 247 112 5 chr11 47572204 47572579 -74271277 - MTD LTR MaLR 0 419 5 1 947 425 325 0 23 chr11 47573619 47573748 -74270108 + RMER15 LTR ERVL 296 421 -154 1 947 245 303 77 26 chr11 47573777 47573855 -74270001 + RMER15 LTR ERVL 494 575 0 1 947 365 309 79 39 chr11 47574034 47574263 -74269593 + L2 LINE L2 2711 2948 -471 1 947 461 372 143 52 chr11 47574491 47574854 -74269002 + Tigger7 DNA MER2_type 5 400 -2091 1 947 314 275 37 56 chr11 47575032 47575140 -74268716 - PB1D10 SINE Alu -2 115 10 1 947 643 281 99 0 chr11 47575178 47575370 -74268486 - B3 SINE B2 -5 211 1 1 947 422 283 30 38 chr11 47575376 47575508 -74268348 + Tigger7 DNA MER2_type 2335 2465 -26 1 947 195 265 61 0 chr11 47575697 47575746 -74268110 - L2a LINE L2 -5 3421 3370 1 947 180 372 98 8 chr11 47575764 47575886 -74267970 - L3 LINE CR1 -102 4387 4255 1 947 994 121 6 6 chr11 47576045 47576212 -74267644 + (GGA)n Simple_repeat Simple_repeat 3 169 0 1 947 444 179 44 19 chr11 47576216 47576375 -74267481 + GA-rich Low_complexity Low_complexity 3 165 0 1 947 2915 94 0 2 chr11 47577056 47577461 -74266395 + L1_Mus4 LINE L1 6227 6630 -6 1 947 222 220 0 0 chr11 47577474 47577533 -74266323 + (ATG)n Simple_repeat Simple_repeat 3 61 0 1 947 497 361 121 29 chr11 47578130 47578583 -74265273 - L1MEb LINE L1 -5316 754 260 1 947 315 0 0 0 chr11 47578763 47578798 -74265058 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 947 336 24 0 0 chr11 47578798 47578838 -74265018 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 947 24 32 0 0 chr11 47579057 47579088 -74264768 + AT_rich Low_complexity Low_complexity 1 31 0 1 948 327 25 0 0 chr11 47579740 47579780 -74264076 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 948 546 16 0 0 chr11 47579780 47579842 -74264014 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 948 184 182 40 120 chr11 47579863 47579913 -74263943 + MIRc SINE MIR 22 67 -201 1 948 9687 92 4 4 chr11 47581121 47583238 -74260618 + L1_Mus1 LINE L1 4452 6567 0 1 948 349 315 4 41 chr11 47584294 47584402 -74259454 + PB1D10 SINE Alu 5 112 -37 1 948 761 293 80 36 chr11 47585673 47585949 -74257907 + MLT1A0 LTR MaLR 3 290 -75 1 948 1048 290 52 21 chr11 47585949 47586336 -74257520 + Lx8 LINE L1 6925 7323 -150 1 948 960 136 21 14 chr11 47586742 47587036 -74256820 + CT-rich Low_complexity Low_complexity 1 296 0 1 948 210 207 0 0 chr11 47587153 47587211 -74256645 + CT-rich Low_complexity Low_complexity 1 58 0 1 948 226 279 0 0 chr11 47587216 47587277 -74256579 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 948 347 351 74 69 chr11 47588617 47588819 -74255037 + B4A SINE B4 70 272 -20 1 948 294 106 0 0 chr11 47588822 47588869 -74254987 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 948 304 400 77 23 chr11 47590777 47591207 -74252649 + MER90 LTR ERV1 5 457 -118 1 948 317 347 62 23 chr11 47591524 47591701 -74252155 - MER20 DNA MER1_type -6 213 30 1 948 335 224 149 23 chr11 47591815 47591902 -74251954 - B1F2 SINE Alu -20 129 32 1 948 805 298 99 0 chr11 47592479 47592721 -74251135 + B4A SINE B4 1 266 -26 1 948 606 14 0 0 chr11 47592731 47592802 -74251054 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 948 888 294 125 0 chr11 47592926 47593269 -74250587 - Tigger5 DNA MER2_type -1 2405 2020 1 948 244 301 48 10 chr11 47593320 47593424 -74250432 - Tigger5 DNA MER2_type -2298 108 1 1 948 269 319 138 91 chr11 47593425 47593701 -74250155 + MLT1C LTR MaLR 108 396 -71 1 948 1870 229 72 13 chr11 47593968 47594602 -74249254 - Lx6 LINE L1 0 7460 6455 1 948 405 0 0 0 chr11 47595000 47595045 -74248811 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 948 1172 271 77 16 chr11 47595176 47595822 -74248034 - Lx6 LINE L1 -725 6735 5822 1 948 490 285 18 0 chr11 47595868 47596033 -74247823 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 948 627 283 5 67 chr11 47596050 47596243 -74247613 - B3A SINE B2 -16 182 2 1 948 642 266 19 19 chr11 47596243 47596400 -74247456 - ID_B1 SINE B4 -67 157 1 1 948 800 104 8 0 chr11 47596816 47596941 -74246915 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 1 948 360 297 60 9 chr11 47596943 47597113 -74246743 - B3A SINE B2 -9 184 5 1 948 828 327 29 32 chr11 47599011 47599292 -74244564 + B4 SINE B4 9 288 -4 1 948 801 74 0 0 chr11 47600614 47600736 -74243120 + (GA)n Simple_repeat Simple_repeat 1 122 0 1 948 233 154 0 19 chr11 47601571 47601624 -74242232 + (TTTG)n Simple_repeat Simple_repeat 4 55 0 1 948 273 310 14 0 chr11 47601833 47601904 -74241952 + ID2 SINE ID 8 79 -4 1 948 188 381 0 12 chr11 47601922 47602007 -74241849 + L2 LINE L2 2506 2589 -830 1 948 624 62 0 0 chr11 47603795 47603876 -74239980 + (TATG)n Simple_repeat Simple_repeat 2 82 0 1 948 538 242 57 77 chr11 47603877 47604123 -74239733 - Lx9 LINE L1 -458 7186 6946 1 948 3737 196 59 74 chr11 47604125 47605034 -74238822 + RMER19B LTR ERVK 1 896 -6 1 948 846 311 124 19 chr11 47605039 47605496 -74238360 - Lx9 LINE L1 -695 6949 6445 1 948 423 0 0 0 chr11 47605496 47605543 -74238313 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 948 32365 26 1 4 chr11 47607665 47613029 -74230827 + L1Md_A LINE L1 257 5586 -297 1 948 8261 42 0 0 chr11 47613030 47614025 -74229831 + L1Md_A LINE L1 5588 6582 0 1 948 337 288 100 7 chr11 47614855 47614995 -74228861 + RSINE1 SINE B4 2 154 -11 1 948 348 173 12 12 chr11 47615282 47615364 -74228492 - Lx2B LINE L1 -2 6998 6917 1 948 621 309 30 18 chr11 47615607 47615772 -74228084 + ID_B1 SINE B4 1 167 -57 1 948 214 137 0 38 chr11 47616652 47616705 -74227151 + A-rich Low_complexity Low_complexity 3 53 0 1 948 190 350 71 35 chr11 47616951 47617120 -74226736 - L3 LINE CR1 -292 4197 4023 1 948 23 33 0 0 chr11 47619320 47619350 -74224506 + AT_rich Low_complexity Low_complexity 1 30 0 1 948 331 248 12 38 chr11 47620368 47620460 -74223396 - ID4 SINE ID -61 91 2 1 948 300 252 34 51 chr11 47622258 47622375 -74221481 + PB1D9 SINE Alu 6 120 0 1 948 371 293 39 44 chr11 47623246 47623428 -74220428 - L1MB5 LINE L1 -192 5982 5802 1 948 412 325 75 0 chr11 47623825 47623945 -74219911 - B1F SINE Alu -5 144 16 1 948 24 0 0 0 chr11 47624263 47624287 -74219569 + AT_rich Low_complexity Low_complexity 1 24 0 1 948 509 332 68 60 chr11 47624495 47624831 -74219025 - ORR1E LTR MaLR -11 348 10 1 948 1699 183 63 16 chr11 47625704 47626071 -74217785 - ORR1C2 LTR MaLR 0 384 1 1 948 337 336 113 33 chr11 47628456 47628607 -74215249 + B3A SINE B2 2 164 -34 1 948 384 22 0 0 chr11 47628620 47628665 -74215191 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 948 387 0 0 0 chr11 47629678 47629721 -74214135 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 948 257 322 50 50 chr11 47629985 47630106 -74213750 + Charlie8 DNA MER1_type 25 145 -2283 1 948 747 265 58 29 chr11 47630113 47630319 -74213537 - B3 SINE B2 -2 214 3 1 948 210 71 0 0 chr11 47631087 47631115 -74212741 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2 948 330 320 10 10 chr11 47631151 47631252 -74212604 - RSINE1 SINE B4 -62 103 3 2 948 430 245 90 134 chr11 47631986 47632373 -74211483 - ORR1D2 LTR MaLR 0 370 1 2 948 1057 116 0 0 chr11 47632644 47632791 -74211065 - B1_Mus1 SINE Alu 0 148 2 2 948 205 301 66 28 chr11 47633146 47633252 -74210604 + MIRb SINE MIR 45 154 -114 2 948 216 269 283 0 chr11 47633466 47633611 -74210245 - MIRb SINE MIR -8 260 75 2 948 915 265 52 9 chr11 47635488 47635720 -74208136 + B4 SINE B4 1 242 -50 2 948 195 69 0 0 chr11 47635728 47635757 -74208099 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 948 316 265 29 0 chr11 47636009 47636077 -74207779 - ID4_ SINE ID -9 74 5 2 948 887 324 75 12 chr11 47636091 47636516 -74207340 - Lx8 LINE L1 -4 7469 7018 2 948 321 240 0 0 chr11 47637940 47638036 -74205820 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 948 514 295 14 64 chr11 47638036 47638177 -74205679 - RSINE1 SINE B4 0 165 32 2 948 1618 234 74 48 chr11 47638177 47638406 -74205450 + Lx7 LINE L1 7098 7326 -370 2 948 204 40 0 0 chr11 47638406 47638431 -74205425 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 948 1618 234 74 48 chr11 47638431 47638781 -74205075 + Lx7 LINE L1 7327 7691 -5 2 948 356 149 0 15 chr11 47638892 47638960 -74204896 - L1_Mur3 LINE L1 -197 5683 5617 2 948 5958 214 36 26 chr11 47638958 47640381 -74203475 + Lx7 LINE L1 6260 7696 0 2 948 246 266 162 46 chr11 47641785 47642078 -74201778 + RLTR15 LTR ERVK 50 290 -69 2 948 400 48 16 31 chr11 47642186 47642250 -74201606 + (CATA)n Simple_repeat Simple_repeat 4 66 0 2 948 813 62 23 0 chr11 47642421 47642551 -74201305 + L1Md_F2 LINE L1 6450 6582 0 2 948 725 245 52 42 chr11 47642713 47642905 -74200951 + B3A SINE B2 1 194 -4 2 948 23 68 0 0 chr11 47644041 47644085 -74199771 + AT_rich Low_complexity Low_complexity 1 44 0 2 948 2803 273 87 35 chr11 47645252 47646391 -74197465 + Lx9 LINE L1 6319 7516 -128 2 948 348 179 53 18 chr11 47646672 47646786 -74197070 + Lx9 LINE L1 7520 7637 -7 2 948 6965 100 19 4 chr11 47647386 47648621 -74195235 - L1_Mus4 LINE L1 -7 6629 5375 2 948 3223 147 5 0 chr11 47648621 47649185 -74194671 + L1_Mus4 LINE L1 4793 5359 -524 2 948 3631 60 0 20 chr11 47649187 47649682 -74194174 + L1_Mus1 LINE L1 6043 6527 -40 2 948 495 86 12 51 chr11 47649682 47649762 -74194094 + B1_Mus1 SINE Alu 34 117 -10 2 948 546 16 0 0 chr11 47649762 47649825 -74194031 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 948 517 225 6 50 chr11 47650040 47650199 -74193657 - Lx4A LINE L1 -11 7047 6896 2 948 216 67 0 0 chr11 47650594 47650624 -74193232 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 2 948 922 114 19 0 chr11 47651077 47651235 -74192621 + L1_Mus3 LINE L1 6478 6638 0 2 948 269 260 0 0 chr11 47651854 47651904 -74191952 - B4A SINE B4 -219 73 24 2 948 5922 64 10 0 chr11 47652002 47652829 -74191027 - L1Md_F2 LINE L1 -954 4929 4095 2 948 4322 56 0 2 chr11 47652827 47653397 -74190459 + L1Md_F2 LINE L1 5018 5586 -297 2 948 7598 68 3 1 chr11 47653398 47654377 -74189479 + L1Md_F2 LINE L1 5588 6568 -14 2 948 210 118 0 0 chr11 47654461 47654495 -74189361 + (GGA)n Simple_repeat Simple_repeat 3 36 0 2 948 1669 219 35 97 chr11 47656540 47657127 -74186729 + RMER19C LTR ERVK 132 902 0 2 948 279 370 39 63 chr11 47657214 47657419 -74186437 - MIR SINE MIR -6 256 57 2 948 486 281 106 35 chr11 47657911 47658081 -74185775 - B3A SINE B2 -16 182 1 2 948 217 360 11 33 chr11 47659006 47659098 -74184758 + L2b LINE L2 3284 3373 -2 2 948 191 337 11 11 chr11 47660096 47660186 -74183670 - MIRb SINE MIR -26 242 153 2 948 283 265 47 4 chr11 47660660 47660779 -74183077 - MIRb SINE MIR -37 231 103 2 948 1081 8 0 0 chr11 47661057 47661189 -74182667 - L1Md_A LINE L1 0 6582 6451 2 948 16316 10 0 0 chr11 47661189 47663429 -74180427 - L1Md_A LINE L1 -390 6192 3954 2 948 3982 11 0 0 chr11 47663429 47663903 -74179953 + L1Md_A LINE L1 4835 5308 -575 2 948 28259 36 0 0 chr11 47663898 47669577 -74174279 + L1Md_T LINE L1 1 5589 -297 2 948 8984 7 0 0 chr11 47669577 47670573 -74173283 + L1Md_T LINE L1 5590 6585 0 2 948 2483 14 0 0 chr11 47670573 47670866 -74172990 + L1Md_A LINE L1 5294 5586 -297 2 948 8820 15 0 0 chr11 47670866 47671860 -74171996 + L1Md_A LINE L1 5587 6580 -2 2 948 13405 39 1 0 chr11 47671880 47674432 -74169424 - L1Md_A LINE L1 -2919 2964 455 2 948 201 121 0 0 chr11 47674594 47674627 -74169229 + (TAA)n Simple_repeat Simple_repeat 3 35 0 2 948 215 203 17 0 chr11 47674649 47674708 -74169148 + GA-rich Low_complexity Low_complexity 4 63 0 2 948 280 235 14 14 chr11 47674769 47674838 -74169018 - ID4_ SINE ID -13 70 2 2 948 262 220 17 0 chr11 47674840 47674899 -74168957 - 4.5SRNA scRNA scRNA -7 87 28 2 948 202 296 122 0 chr11 47675621 47675736 -74168120 + L2a LINE L2 3221 3349 -77 2 948 4201 13 34 0 chr11 47676646 47677123 -74166733 + MT2_Mm LTR ERVL 1 493 0 2 948 2587 53 3 12 chr11 47677123 47677465 -74166391 - ORR1A0 LTR MaLR -7 339 1 2 948 655 136 64 0 chr11 47678594 47678734 -74165122 - Lx2 LINE L1 0 6997 6849 2 948 2113 117 0 20 chr11 47678734 47679075 -74164781 + Lx2 LINE L1 6529 6862 -135 2 948 261 0 0 0 chr11 47679297 47679326 -74164530 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 948 333 0 0 0 chr11 47679326 47679362 -74164494 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 948 735 267 89 19 chr11 47679668 47679882 -74163974 + B4 SINE B4 1 229 -63 2 948 270 159 43 0 chr11 47679882 47679951 -74163905 + GA-rich Low_complexity Low_complexity 1 72 0 2 948 254 135 39 0 chr11 47680089 47680141 -74163715 + GA-rich Low_complexity Low_complexity 2 55 0 2 948 561 99 0 0 chr11 47681108 47681189 -74162667 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 948 356 272 31 32 chr11 47681245 47681427 -74162429 + L1ME2 LINE L1 5997 6177 -2 2 948 339 282 66 24 chr11 47681850 47682017 -74161839 + Tigger13a DNA MER2_type 192 365 -406 2 948 857 297 134 34 chr11 47682113 47682583 -74161273 - Lx8 LINE L1 -10 7463 6947 2 948 429 54 0 0 chr11 47682685 47682741 -74161115 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 948 781 271 52 0 chr11 47683085 47683277 -74160579 + B3 SINE B2 2 203 -13 2 948 31 0 0 0 chr11 47683278 47683309 -74160547 + AT_rich Low_complexity Low_complexity 1 31 0 2 948 4734 78 51 113 chr11 47683309 47684254 -74159602 - L1_Mur1 LINE L1 -2990 2896 2011 2 948 24 32 0 0 chr11 47684515 47684546 -74159310 + AT_rich Low_complexity Low_complexity 1 31 0 2 948 630 104 0 0 chr11 47684562 47684658 -74159198 + (TC)n Simple_repeat Simple_repeat 2 97 0 2 948 534 31 0 0 chr11 47685808 47685872 -74157984 + (GAA)n Simple_repeat Simple_repeat 2 65 0 2 948 3507 23 2 0 chr11 47686052 47686447 -74157409 - MTA_Mm LTR MaLR 0 396 1 2 948 244 352 0 0 chr11 47686814 47686902 -74156954 - Lx8 LINE L1 -297 7176 7089 2 948 663 296 134 43 chr11 47686961 47687821 -74156035 - L1MA7 LINE L1 -21 6279 5321 2 948 531 45 0 0 chr11 47690117 47690183 -74153673 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 948 318 26 0 0 chr11 47691138 47691177 -74152679 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 948 230 241 35 24 chr11 47691292 47691377 -74152479 + GA-rich Low_complexity Low_complexity 1 86 0 2 948 321 53 35 18 chr11 47691386 47691443 -74152413 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 948 604 327 57 46 chr11 47691666 47691825 -74152031 - MTE2b LTR MaLR 0 379 210 2 948 585 0 0 0 chr11 47691825 47691890 -74151966 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 948 604 327 57 46 chr11 47691890 47692102 -74151754 - MTE2b LTR MaLR -170 209 4 2 948 1285 294 48 13 chr11 47692107 47692483 -74151373 - MTE2b-int LTR MaLR -2 1578 1190 2 948 234 336 103 32 chr11 47692748 47692874 -74150982 - MLT1G LTR MaLR -82 509 375 2 948 316 303 86 30 chr11 47692896 47693119 -74150737 - MLT1G LTR MaLR -295 296 54 2 948 187 400 7 54 chr11 47693226 47693251 -74150605 + MIR SINE MIR 20 40 -222 2 948 1055 131 177 5 chr11 47693251 47693443 -74150413 - URR1A DNA MER1_type -1 225 1 2 948 205 380 30 28 chr11 47693443 47693586 -74150270 + MIRc SINE MIR 41 198 -70 2 948 517 263 86 0 chr11 47694559 47694711 -74149145 + B3A SINE B2 17 181 -17 2 948 513 115 0 0 chr11 47694712 47694808 -74149048 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 948 195 69 0 0 chr11 47696193 47696222 -74147634 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2 948 420 283 123 48 chr11 47697288 47697581 -74146275 + L1MC5 LINE L1 7406 7720 -241 2 948 287 25 0 24 chr11 47697984 47698025 -74145831 + (CATA)n Simple_repeat Simple_repeat 2 41 0 2 948 270 210 12 12 chr11 47698029 47698111 -74145745 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 948 325 326 150 19 chr11 47699472 47699529 -74144327 - MER44A DNA MER2_type -38 301 231 2 948 555 16 0 0 chr11 47699529 47699593 -74144263 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 948 325 326 150 19 chr11 47699593 47699801 -74144055 - MER44A DNA MER2_type -109 230 1 2 948 385 265 68 10 chr11 47699816 47699919 -74143937 + B1F SINE Alu 1 109 -40 2 948 1275 265 41 43 chr11 47699954 47700419 -74143437 + Lx7 LINE L1 6685 7148 -548 2 948 1137 35 0 0 chr11 47700431 47700573 -74143283 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2 948 3322 184 37 10 chr11 47700574 47701357 -74142499 - Lx4B LINE L1 -27 6973 6174 2 948 1102 100 7 10 chr11 47701357 47701660 -74142196 + (TG)n Simple_repeat Simple_repeat 1 302 0 2 948 1158 75 4 22 chr11 47701685 47702186 -74141670 + (TG)n Simple_repeat Simple_repeat 1 491 0 2 948 509 320 8 0 chr11 47702493 47702618 -74141238 + RSINE1 SINE B4 9 134 -31 2 948 402 57 0 0 chr11 47702624 47702677 -74141179 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 948 244 234 47 47 chr11 47703250 47703335 -74140521 - L2c LINE L2 -53 3334 3250 2 948 444 316 40 23 chr11 47704884 47705059 -74138797 + B3A SINE B2 2 179 -19 2 948 378 0 0 0 chr11 47705060 47705102 -74138754 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 948 229 368 16 31 chr11 47705975 47706104 -74137752 + MIRm SINE MIR 15 141 -127 2 948 558 340 56 30 chr11 47706630 47706967 -74136889 + MLT1B LTR MaLR 3 348 -42 2 948 182 371 76 0 chr11 47707270 47707375 -74136481 + MIRc SINE MIR 65 177 -91 2 948 188 381 52 0 chr11 47707518 47707615 -74136241 - MIR SINE MIR -100 162 61 2 948 452 328 28 65 chr11 47708606 47708854 -74135002 - L2 LINE L2 -396 3023 2785 3 948 3707 196 59 37 chr11 47709052 47709862 -74133994 - RMER13B LTR ERVK -4 904 75 3 948 504 0 0 0 chr11 47709862 47709918 -74133938 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 118 2648 78 24 3 chr11 47709918 47710292 -74133564 - L1_Mus3 LINE L1 -12 6626 6245 3 949 3707 196 59 37 chr11 47710292 47710350 -74133506 - RMER13B LTR ERVK -834 74 17 3 949 26 0 0 0 chr11 47711482 47711508 -74132348 + AT_rich Low_complexity Low_complexity 1 26 0 3 949 222 243 62 18 chr11 47711728 47711823 -74132033 - MIR SINE MIR -97 171 71 3 949 436 248 135 47 chr11 47712564 47712712 -74131144 + MLT2B1 LTR ERVL 57 217 -303 3 949 410 196 19 7 chr11 47712712 47712868 -74130988 + GA-rich Low_complexity Low_complexity 1 158 0 3 949 278 324 19 10 chr11 47712875 47712978 -74130878 + MLT2B1 LTR ERVL 405 508 -59 3 949 679 298 44 0 chr11 47713245 47713450 -74130406 - B3 SINE B2 -2 214 1 3 949 349 289 64 116 chr11 47713473 47713645 -74130211 + RSINE1 SINE B4 3 165 0 3 949 189 250 181 0 chr11 47715163 47715235 -74128621 - MIRb SINE MIR -5 263 179 3 949 24 0 0 0 chr11 47715428 47715452 -74128404 + AT_rich Low_complexity Low_complexity 1 24 0 3 949 414 0 0 0 chr11 47715491 47715537 -74128319 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 949 593 80 11 0 chr11 47715578 47715666 -74128190 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 949 275 309 30 38 chr11 47716163 47716294 -74127562 + MIRb SINE MIR 61 190 -78 3 949 962 84 7 7 chr11 47716626 47716781 -74127075 - L1_Mus4 LINE L1 -3 6633 6479 3 949 308 43 22 0 chr11 47717104 47717150 -74126706 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 949 1162 43 0 14 chr11 47717150 47717292 -74126564 - B1_Mm SINE Alu -6 141 2 3 949 740 126 31 0 chr11 47718030 47718189 -74125667 + (TAGA)n Simple_repeat Simple_repeat 3 166 0 3 949 495 118 0 0 chr11 47718236 47718312 -74125544 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 3 949 705 190 49 7 chr11 47718462 47718605 -74125251 + B1_Mur3 SINE Alu 1 149 0 3 949 454 373 58 12 chr11 47718847 47719173 -74124683 + L1ME4a LINE L1 5604 5944 -180 3 949 1160 277 22 92 chr11 47719596 47719998 -74123858 + MTE2a LTR MaLR 3 376 -3 3 949 21 36 0 0 chr11 47720023 47720051 -74123805 + AT_rich Low_complexity Low_complexity 1 28 0 3 949 216 0 0 0 chr11 47720260 47720284 -74123572 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 949 1607 259 7 26 chr11 47720524 47720949 -74122907 - MTD LTR MaLR -2 417 1 3 949 207 0 0 0 chr11 47722595 47722618 -74121238 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 949 188 32 97 0 chr11 47724416 47724447 -74119409 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 3 949 532 294 31 38 chr11 47725697 47725856 -74118000 - RSINE1 SINE B4 0 165 8 3 949 671 251 12 12 chr11 47725886 47726047 -74117809 - U1 snRNA snRNA -4 161 1 3 949 294 338 73 6 chr11 47726361 47726525 -74117331 + MER20 DNA MER1_type 1 175 -44 3 949 347 352 25 37 chr11 47726665 47726827 -74117029 - MER3 DNA MER1_type 0 209 50 3 949 8329 22 11 0 chr11 47727447 47728917 -74114939 - L1Md_T LINE L1 -1 6581 5102 3 949 593 76 11 0 chr11 47729430 47729522 -74114334 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 3 949 632 322 71 48 chr11 47731327 47731542 -74112314 + B4A SINE B4 9 238 -54 3 949 6692 127 7 12 chr11 47731542 47732587 -74111269 + Lx2 LINE L1 5959 6997 0 3 949 632 322 71 48 chr11 47732587 47732639 -74111217 + B4A SINE B4 239 282 -10 3 949 255 320 0 0 chr11 47732659 47732737 -74111119 + (CATA)n Simple_repeat Simple_repeat 1 78 0 3 949 1545 48 0 0 chr11 47734573 47734759 -74109097 - B2_Mm1t SINE B2 -7 186 1 3 949 524 321 35 60 chr11 47736333 47736532 -74107324 - B3A SINE B2 -4 194 1 3 949 197 414 89 2 chr11 47736926 47737071 -74106785 - MIRm SINE MIR -49 159 11 3 949 21 71 0 0 chr11 47737078 47737120 -74106736 + AT_rich Low_complexity Low_complexity 1 42 0 3 949 626 317 116 19 chr11 47737484 47738184 -74105672 - L1MEg LINE L1 -2890 4347 3580 3 949 464 344 36 22 chr11 47738524 47738747 -74105109 + RMER15 LTR ERVL 337 562 -13 3 949 397 298 106 29 chr11 47738777 47739100 -74104756 - L1MEg LINE L1 -3791 3446 3120 3 949 593 321 130 57 chr11 47739514 47740020 -74103836 - L1MEg LINE L1 -4759 2574 2032 3 949 274 343 43 33 chr11 47740713 47740897 -74102959 - L1MEg LINE L1 -5914 321 136 3 949 27 0 0 0 chr11 47741033 47741060 -74102796 + AT_rich Low_complexity Low_complexity 1 27 0 3 949 2051 178 107 19 chr11 47742261 47742777 -74101079 - RLTR31_Mm LTR ERVK 0 561 1 3 949 760 254 14 19 chr11 47742780 47742978 -74100878 + B3A SINE B2 2 192 -3 3 949 539 295 42 42 chr11 47743045 47743261 -74100595 + MamRep434 DNA TcMar 148 363 -63 3 949 399 41 0 0 chr11 47744300 47744349 -74099507 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 949 501 127 0 0 chr11 47744540 47744619 -74099237 + (CATA)n Simple_repeat Simple_repeat 1 79 0 3 949 270 299 144 39 chr11 47746281 47746434 -74097422 + MLT1K LTR MaLR 423 591 -4 3 949 21 0 0 0 chr11 47747094 47747115 -74096741 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 1283 270 108 11 chr11 47747268 47747646 -74096210 - MTD LTR MaLR -4 415 1 3 949 727 180 99 23 chr11 47747646 47747817 -74096039 + B2_Mm2 SINE B2 2 185 -10 3 949 1285 210 123 3 chr11 47748529 47748863 -74094993 + ORR1D1 LTR MaLR 1 374 0 3 949 251 242 65 21 chr11 47749418 47749511 -74094345 - Lx8 LINE L1 -9 7464 7368 3 949 584 289 66 13 chr11 47749854 47750005 -74093851 + B3A SINE B2 1 159 -39 3 949 522 0 0 0 chr11 47750005 47750063 -74093793 + (TC)n Simple_repeat Simple_repeat 2 59 0 3 949 183 186 0 0 chr11 47750063 47750106 -74093750 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 949 1030 232 106 20 chr11 47750238 47750493 -74093363 + MTEb LTR MaLR 82 358 -21 3 949 2802 94 34 10 chr11 47750970 47751377 -74092479 - L1_Mus3 LINE L1 -7 6631 6215 3 949 933 270 5 9 chr11 47751671 47751888 -74091968 + B3 SINE B2 1 216 0 3 949 239 244 11 89 chr11 47752441 47752531 -74091325 + MIR3 SINE MIR 103 185 -23 3 949 280 64 21 21 chr11 47752742 47752790 -74091066 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 949 255 365 18 25 chr11 47753782 47753945 -74089911 + RSINE1 SINE B4 2 163 -2 3 949 333 0 0 0 chr11 47753952 47753989 -74089867 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 949 1796 262 83 32 chr11 47754214 47754814 -74089042 + Lx8 LINE L1 6661 7291 -182 3 949 459 0 0 0 chr11 47754833 47754884 -74088972 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 949 26 30 0 0 chr11 47755030 47755063 -74088793 + AT_rich Low_complexity Low_complexity 1 33 0 3 949 317 132 0 7 chr11 47755282 47755336 -74088520 - Lx LINE L1 -853 5801 5746 3 949 355 179 0 60 chr11 47755342 47755425 -74088431 + L1_Mur3 LINE L1 5800 5877 -3 3 949 3178 230 61 68 chr11 47755418 47756309 -74087547 + Lx7 LINE L1 6805 7688 -8 3 949 477 0 0 0 chr11 47756649 47756702 -74087154 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 949 1740 186 33 87 chr11 47757257 47757646 -74086210 + ORR1B1 LTR MaLR 27 394 0 3 949 339 303 56 24 chr11 47758604 47758729 -74085127 + Tigger9a DNA Tigger 374 502 -230 3 949 224 359 32 21 chr11 47759699 47759793 -74084063 + L2b LINE L2 3276 3370 -5 3 949 3921 40 32 0 chr11 47759915 47760386 -74083470 - L1_Mus1 LINE L1 0 6567 6082 3 949 197 219 0 0 chr11 47760390 47760431 -74083425 + MIRc SINE MIR 197 237 -31 3 949 209 286 186 0 chr11 47760505 47760575 -74083281 + MIRb SINE MIR 24 106 -162 3 949 262 329 27 14 chr11 47760690 47760811 -74083045 - L2c LINE L2 -66 3321 3169 3 949 513 314 168 23 chr11 47761166 47761476 -74082380 + MLT1D LTR MaLR 12 366 -139 3 949 357 127 0 31 chr11 47761482 47761547 -74082309 - L1_Mm LINE L1 -464 5419 5357 3 949 728 216 55 16 chr11 47761733 47761974 -74081882 + Lx4B LINE L1 6736 7055 -3 3 949 1036 95 0 33 chr11 47762075 47762227 -74081629 + B1_Mus1 SINE Alu 2 148 0 3 949 523 321 7 36 chr11 47763186 47763325 -74080531 - RSINE1 SINE B4 -28 137 3 3 949 498 46 0 0 chr11 47764217 47764282 -74079574 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 949 420 20 0 0 chr11 47764964 47765013 -74078843 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 949 453 36 0 0 chr11 47765079 47765134 -74078722 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 949 280 238 162 0 chr11 47767445 47767525 -74076331 + MIR SINE MIR 84 176 -86 3 949 1096 91 4 8 chr11 47767731 47767978 -74075878 + (TCTA)n Simple_repeat Simple_repeat 1 245 0 3 949 302 347 0 0 chr11 47768001 47768073 -74075783 - RSINE1 SINE B4 -4 161 90 3 949 306 0 0 0 chr11 47768969 47769003 -74074853 + (ATTG)n Simple_repeat Simple_repeat 4 37 0 3 949 1316 243 63 97 chr11 47769249 47769574 -74074282 - MTD LTR MaLR -8 411 91 3 949 1186 62 0 0 chr11 47769574 47769720 -74074136 - B1_Mm SINE Alu 0 147 2 3 949 1316 243 63 97 chr11 47769720 47769808 -74074048 - MTD LTR MaLR -329 90 12 3 949 207 114 0 0 chr11 47770037 47770072 -74073784 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 949 281 273 13 115 chr11 47770550 47770707 -74073149 + RMER12 LTR ERVK 720 860 -462 3 949 559 25 25 25 chr11 47770871 47770952 -74072904 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 3 949 246 341 107 23 chr11 47771080 47771257 -74072599 + MIRb SINE MIR 57 248 -20 3 949 279 0 0 0 chr11 47772022 47772053 -74071803 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 949 23 33 0 0 chr11 47772216 47772246 -74071610 + AT_rich Low_complexity Low_complexity 1 30 0 3 949 301 310 45 30 chr11 47773103 47773236 -74070620 + MIRb SINE MIR 134 268 0 3 949 5350 56 0 12 chr11 47775575 47776257 -74067599 - L1Md_F2 LINE L1 0 6582 5909 3 949 389 332 109 15 chr11 47776729 47776931 -74066925 - MIRc SINE MIR -2 266 46 4 949 262 331 31 46 chr11 47777770 47777900 -74065956 + MIRc SINE MIR 66 193 -75 4 949 689 211 11 28 chr11 47778763 47778943 -74064913 + Lx6 LINE L1 5738 5914 -1546 4 949 4668 221 46 4 chr11 47778939 47779942 -74063914 + Lx6 LINE L1 6223 7267 -193 4 949 2052 113 25 12 chr11 47780101 47780424 -74063432 + ORR1A2 LTR MaLR 1 327 0 4 949 29 47 0 0 chr11 47780678 47780721 -74063135 + AT_rich Low_complexity Low_complexity 1 43 0 4 949 385 320 22 52 chr11 47781571 47781706 -74062150 - RSINE1 SINE B4 -30 135 5 4 949 35 41 0 0 chr11 47781714 47781763 -74062093 + AT_rich Low_complexity Low_complexity 1 49 0 4 949 233 229 15 62 chr11 47782428 47782493 -74061363 - L2c LINE L2 -20 3367 3306 4 949 252 283 90 16 chr11 47782782 47782904 -74060952 - B1F SINE Alu -16 133 3 4 949 1017 67 0 0 chr11 47783233 47783367 -74060489 + B1_Mm SINE Alu 11 144 -3 4 949 651 26 0 0 chr11 47783367 47783444 -74060412 + (GAA)n Simple_repeat Simple_repeat 2 78 0 4 949 328 20 0 39 chr11 47783567 47783618 -74060238 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 4 949 428 306 27 7 chr11 47783953 47784101 -74059755 + MER5A DNA MER1_type 1 151 -38 4 949 473 226 12 2 chr11 47784339 47784445 -74059411 - B1_Mus2 SINE Alu 0 149 40 4 949 313 266 24 48 chr11 47784381 47784464 -74059392 - MT2B LTR ERVL -343 258 178 4 949 558 262 41 8 chr11 47784970 47785093 -74058763 - B3A SINE B2 -70 128 2 4 949 207 0 0 0 chr11 47785295 47785318 -74058538 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 949 498 311 0 29 chr11 47785884 47786020 -74057836 - RSINE1 SINE B4 -24 141 10 4 949 2975 129 0 5 chr11 47786576 47787013 -74056843 + RLTR10C LTR ERVK 1 435 -1 4 949 747 354 138 69 chr11 47787496 47787970 -74055886 + MER21B LTR ERV1 49 519 -344 4 949 378 0 0 0 chr11 47787970 47788012 -74055844 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 949 747 354 138 69 chr11 47788012 47788289 -74055567 + MER21B LTR ERV1 520 852 -11 4 949 22 70 0 0 chr11 47788347 47788390 -74055466 + AT_rich Low_complexity Low_complexity 1 43 0 4 949 445 302 22 60 chr11 47788568 47788702 -74055154 + RSINE1 SINE B4 4 132 -33 4 949 378 0 0 0 chr11 47788703 47788745 -74055111 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 949 265 280 30 0 chr11 47788747 47788847 -74055009 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 4 949 543 317 71 24 chr11 47788995 47789163 -74054693 - ID_B1 SINE B4 -8 216 41 4 949 1185 204 14 25 chr11 47790749 47791031 -74052825 + Lx7 LINE L1 6821 7099 -597 4 949 781 283 83 55 chr11 47791062 47791555 -74052301 + Lx8 LINE L1 6967 7473 0 4 949 272 155 17 17 chr11 47791789 47791848 -74052008 - Lx2B LINE L1 -1200 5800 5742 4 949 430 138 38 26 chr11 47791800 47791921 -74051935 + Lx7 LINE L1 5716 5875 -1821 4 949 1824 265 11 27 chr11 47791918 47792480 -74051376 + Lx7 LINE L1 6805 7357 -339 4 949 39 0 0 0 chr11 47792483 47792522 -74051334 + AT_rich Low_complexity Low_complexity 1 39 0 4 949 306 0 0 0 chr11 47792549 47792583 -74051273 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 949 551 157 10 10 chr11 47792583 47792686 -74051170 + Lx7 LINE L1 7592 7694 -2 4 949 21 57 0 0 chr11 47792693 47792728 -74051128 + AT_rich Low_complexity Low_complexity 1 35 0 4 949 383 348 68 57 chr11 47793345 47793698 -74050158 + ORR1E LTR MaLR 3 359 0 4 949 396 0 0 0 chr11 47794310 47794354 -74049502 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 949 675 321 75 24 chr11 47794378 47794630 -74049226 - B4A SINE B4 -27 265 1 4 949 183 410 0 0 chr11 47795883 47795978 -74047878 + MIR SINE MIR 30 124 -84 4 949 256 319 14 14 chr11 47798091 47798164 -74045692 - MER5A DNA MER1_type -50 139 67 4 949 193 273 165 33 chr11 47798238 47798329 -74045527 + MIR SINE MIR 31 133 -75 4 949 204 40 0 0 chr11 47798509 47798534 -74045322 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 949 273 82 32 32 chr11 47798541 47798604 -74045252 + (TTTTTG)n Simple_repeat Simple_repeat 5 67 0 4 949 441 148 0 0 chr11 47800587 47800668 -74043188 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 949 191 305 160 21 chr11 47803603 47803747 -74040109 - L2c LINE L2 -161 3214 3051 4 949 183 200 35 52 chr11 47806159 47806217 -74037639 - MIRc SINE MIR -111 157 101 4 949 613 102 19 0 chr11 47806722 47806830 -74037026 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 4 949 415 329 106 31 chr11 47807944 47808170 -74035686 + MIRc SINE MIR 21 263 -5 4 949 361 283 58 45 chr11 47808421 47808637 -74035219 - MIR SINE MIR 0 262 48 4 949 873 285 70 90 chr11 47808850 47809230 -74034626 + L1MC3 LINE L1 5451 5815 -1970 4 949 693 223 211 0 chr11 47809230 47809396 -74034460 + B3 SINE B2 4 204 -12 4 949 873 285 70 90 chr11 47809396 47809725 -74034131 + L1MC3 LINE L1 5816 6146 -1639 4 949 479 302 94 27 chr11 47809728 47810027 -74033829 + L1MC3 LINE L1 7081 7399 -386 4 949 1893 244 121 18 chr11 47810121 47810618 -74033238 + RMER15 LTR ERVL 28 575 0 4 949 231 57 0 0 chr11 47810870 47810905 -74032951 + L1MC3 LINE L1 7734 7768 -17 4 949 472 352 63 42 chr11 47810946 47811183 -74032673 - B4A SINE B4 -2 290 49 4 949 184 271 96 41 chr11 47812045 47812118 -74031738 - MIRm SINE MIR -181 95 19 4 949 554 243 208 3 chr11 47812452 47812770 -74031086 + L1MB8 LINE L1 5681 6063 -115 4 949 3235 77 143 12 chr11 47813899 47814612 -74029244 - RLTR13D1 LTR ERVK 0 806 1 4 949 537 303 56 0 chr11 47814629 47814771 -74029085 - ID_B1 SINE B4 -25 199 50 4 949 869 308 5 18 chr11 47816161 47816379 -74027477 + ID_B1 SINE B4 1 215 -9 4 949 329 365 70 44 chr11 47816470 47816699 -74027157 - MIR SINE MIR -20 242 8 4 949 582 230 126 10 chr11 47816805 47817003 -74026853 - MER96B DNA hAT -196 221 1 4 949 3183 57 177 2 chr11 47817117 47817553 -74026303 + RLTR1B LTR ERV1 1 512 0 4 949 1524 195 63 6 chr11 47817689 47818040 -74025816 + ORR1D1 LTR MaLR 4 374 0 4 949 45 34 0 0 chr11 47818598 47818657 -74025199 + AT_rich Low_complexity Low_complexity 1 59 0 4 949 230 333 46 38 chr11 47818660 47818791 -74025065 - Lx9 LINE L1 -288 7356 7225 4 949 3091 166 33 18 chr11 47818816 47819385 -74024471 - Lx4B LINE L1 -1 7057 6480 4 949 5523 48 32 3 chr11 47819383 47820077 -74023779 - L1Md_F2 LINE L1 -6 6576 5863 4 949 10878 147 43 11 chr11 47820077 47822796 -74021060 - Lx4B LINE L1 -563 6495 3682 4 949 2902 139 9 6 chr11 47822794 47823328 -74020528 - Lx4B LINE L1 -2682 3195 2660 4 949 239 321 0 0 chr11 47823397 47823453 -74020403 - Lx8 LINE L1 -471 7002 6947 4 949 806 331 23 17 chr11 47824208 47824561 -74019295 + ORR1E LTR MaLR 5 359 0 4 949 712 294 21 13 chr11 47825025 47825226 -74018630 + MLT1B LTR MaLR 1 202 -188 4 949 895 82 15 0 chr11 47825226 47825360 -74018496 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 949 712 294 21 13 chr11 47825360 47825396 -74018460 + MLT1B LTR MaLR 203 239 -151 4 949 1064 219 187 148 chr11 47825637 47825838 -74018018 - MT2A LTR ERVL -77 456 191 4 949 396 0 0 0 chr11 47825838 47825882 -74017974 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 949 1064 219 187 148 chr11 47825882 47826119 -74017737 - MT2A LTR ERVL -343 190 3 4 949 271 301 82 39 chr11 47826612 47826819 -74017037 - Tigger14a DNA MER2_type -17 307 92 4 949 391 346 43 25 chr11 47827276 47827439 -74016417 + MLT1N2 LTR MaLR 83 248 -314 4 949 549 343 28 34 chr11 47827593 47827771 -74016085 - B3A SINE B2 0 198 22 4 949 298 282 9 18 chr11 47828010 47828122 -74015734 + HERV16-int LTR ERVL 1074 1184 -3812 4 949 653 298 0 0 chr11 47828612 47828773 -74015083 + MER58B DNA MER1_type 173 333 -8 4 949 22 0 0 0 chr11 47828812 47828834 -74015022 + AT_rich Low_complexity Low_complexity 1 22 0 4 949 18278 68 13 3 chr11 47829347 47831906 -74011950 + L1Md_F2 LINE L1 2999 5582 -301 4 949 7769 66 0 3 chr11 47831911 47832896 -74010960 + L1Md_F2 LINE L1 5588 6569 -13 4 949 961 320 8 8 chr11 47833006 47833264 -74010592 + B4A SINE B4 26 283 -9 4 949 342 0 0 0 chr11 47833270 47833308 -74010548 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 949 253 263 141 20 chr11 47833491 47833788 -74010068 + L1M2 LINE L1 4732 5096 -1047 4 949 294 266 70 47 chr11 47834243 47834499 -74009357 + L1M2 LINE L1 5093 5354 -789 4 949 1191 107 0 0 chr11 47834501 47834679 -74009177 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 949 271 205 39 0 chr11 47834679 47834757 -74009099 + GA-rich Low_complexity Low_complexity 4 84 0 4 949 299 280 167 14 chr11 47834758 47834979 -74008877 + L1M2 LINE L1 5351 5605 -695 4 949 1048 316 91 12 chr11 47835042 47835382 -74008474 + MTEb LTR MaLR 1 367 -12 4 949 1490 280 60 23 chr11 47835385 47835817 -74008039 + MTEb-int LTR MaLR 6 453 -1127 4 949 264 319 13 94 chr11 47836101 47836260 -74007596 + MTEb-int LTR MaLR 681 826 -754 4 949 28 0 0 0 chr11 47836271 47836299 -74007557 + AT_rich Low_complexity Low_complexity 1 28 0 4 949 2524 188 67 110 chr11 47836303 47836800 -74007056 + L1_Mus2 LINE L1 437 966 -5650 4 949 991 67 67 0 chr11 47836800 47836840 -74007016 + B1_Mm SINE Alu 1 40 -107 4 949 1014 157 0 0 chr11 47836840 47837018 -74006838 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 4 949 991 67 67 0 chr11 47837018 47837112 -74006744 + B1_Mm SINE Alu 41 142 -5 4 949 233 29 29 0 chr11 47837112 47837146 -74006710 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 949 3020 126 37 42 chr11 47837146 47837939 -74005917 + L1_Mus2 LINE L1 967 1701 -4182 4 949 858 83 66 0 chr11 47837939 47838060 -74005796 + B1_Mus1 SINE Alu 1 129 -19 4 949 7099 112 15 8 chr11 47838060 47839298 -74004558 + L1_Mus2 LINE L1 4679 5927 -639 4 949 375 23 0 0 chr11 47839433 47839477 -74004379 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 949 474 18 0 0 chr11 47839477 47839531 -74004325 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 949 614 266 131 11 chr11 47839585 47839760 -74004096 - B3A SINE B2 -1 197 2 4 949 221 286 0 48 chr11 47839800 47839903 -74003953 + GA-rich Low_complexity Low_complexity 3 100 0 4 949 791 193 85 24 chr11 47840409 47840574 -74003282 - ORR1D1 LTR MaLR -3 371 197 4 949 570 168 0 0 chr11 47840569 47840664 -74003192 - ORR1D1 LTR MaLR -279 95 1 4 949 640 147 0 0 chr11 47840713 47840815 -74003041 - Lx7 LINE L1 -791 6905 6804 4 949 237 200 0 0 chr11 47840811 47840851 -74003005 - L1_Mur3 LINE L1 -7410 302 263 4 950 1233 187 54 51 chr11 47841587 47841863 -74001993 + Lx6 LINE L1 6600 6876 -584 4 950 899 88 13 13 chr11 47841920 47842070 -74001786 + (GAA)n Simple_repeat Simple_repeat 3 152 0 4 950 387 0 0 0 chr11 47842070 47842113 -74001743 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 950 1495 237 124 97 chr11 47842113 47842254 -74001602 + Lx6 LINE L1 6879 7020 -440 4 950 3265 23 10 0 chr11 47842254 47842640 -74001216 + L1Md_F2 LINE L1 6190 6579 -3 5 950 1495 237 124 97 chr11 47842640 47843064 -74000792 + Lx6 LINE L1 7021 7459 -1 4 950 22 0 0 0 chr11 47843103 47843125 -74000731 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 371 288 6 12 chr11 47843356 47843528 -74000328 + (TA)n Simple_repeat Simple_repeat 2 172 0 5 950 501 322 7 0 chr11 47843546 47843695 -74000161 - RSINE1 SINE B4 -13 152 3 5 950 502 358 83 24 chr11 47843902 47844638 -73999218 - ERVL-B4-int LTR ERVL -2831 2883 2041 5 950 4121 21 8 2 chr11 47844862 47845339 -73998517 + L1Md_F2 LINE L1 6089 6568 -14 5 950 1811 214 54 39 chr11 47846267 47846681 -73997175 - MTD LTR MaLR -16 403 3 5 950 461 257 154 0 chr11 47847448 47847584 -73996272 - MLT1A1 LTR MaLR 0 408 252 5 950 29 84 0 0 chr11 47847969 47848040 -73995816 + AT_rich Low_complexity Low_complexity 1 71 0 5 950 189 0 0 0 chr11 47848197 47848218 -73995638 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 950 302 326 77 92 chr11 47848241 47848501 -73995355 + L1M5 LINE L1 2377 2632 -3514 5 950 1022 291 17 42 chr11 47848562 47848921 -73994935 - Lx5 LINE L1 -17 7033 6684 5 950 37 52 0 0 chr11 47849059 47849117 -73994739 + AT_rich Low_complexity Low_complexity 1 58 0 5 950 256 305 0 38 chr11 47849239 47849372 -73994484 + L1M5 LINE L1 3811 3938 -2208 5 950 23 33 0 0 chr11 47849397 47849427 -73994429 + AT_rich Low_complexity Low_complexity 1 30 0 5 950 358 320 95 22 chr11 47849517 47849696 -73994160 - MLT1A1 LTR MaLR 0 408 217 5 950 353 250 130 0 chr11 47849896 47849988 -73993868 + B1F1 SINE Alu 40 143 -6 5 950 227 308 81 81 chr11 47851039 47851212 -73992644 - Charlie8 DNA MER1_type -2171 257 85 5 950 369 333 58 29 chr11 47852197 47852370 -73991486 + MIRc SINE MIR 31 208 -60 5 950 300 308 67 86 chr11 47853009 47853336 -73990520 - HAL1 LINE L1 0 2507 2187 5 950 577 238 154 12 chr11 47853553 47853715 -73990141 - MTD LTR MaLR 0 419 235 5 950 2745 151 111 11 chr11 47853799 47854330 -73989526 - RMER4B LTR ERVK -1 584 1 5 950 1655 141 27 46 chr11 47854330 47854658 -73989198 - MurERV4-int LTR ERVK 0 5260 4939 5 950 1904 146 60 12 chr11 47854662 47854995 -73988861 - MurERV4-int LTR ERVK -3525 1735 1387 5 950 795 191 75 107 chr11 47855003 47855284 -73988572 - MurERV4-int LTR ERVK -4584 676 405 5 950 2672 232 15 12 chr11 47855311 47855896 -73987960 - Lx5 LINE L1 -35 7015 6429 5 950 740 304 83 19 chr11 47855905 47856372 -73987484 - L1MB1 LINE L1 -2 6166 5670 5 950 434 18 18 0 chr11 47856375 47856430 -73987426 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 5 950 697 89 50 13 chr11 47856507 47856666 -73987190 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 5 950 355 304 67 30 chr11 47856675 47856929 -73986927 - L1M3 LINE L1 -698 5466 5203 5 950 234 0 0 0 chr11 47857098 47857124 -73986732 + (TGAG)n Simple_repeat Simple_repeat 2 27 0 5 950 977 284 48 8 chr11 47857313 47857686 -73986170 - L1M3 LINE L1 -1016 5124 4737 5 950 430 294 196 0 chr11 47858958 47859142 -73984714 + MIR SINE MIR 11 230 -32 5 950 302 256 36 12 chr11 47859768 47859851 -73984005 + MIRb SINE MIR 167 251 -17 5 950 223 265 157 33 chr11 47859886 47860007 -73983849 - L2a LINE L2 -340 3086 2951 5 950 325 308 13 0 chr11 47861285 47861363 -73982493 - MLT1H1 LTR MaLR -468 87 9 5 950 25 0 0 0 chr11 47862458 47862483 -73981373 + AT_rich Low_complexity Low_complexity 1 25 0 5 950 40 37 0 0 chr11 47862806 47862860 -73980996 + AT_rich Low_complexity Low_complexity 1 54 0 5 950 816 252 34 10 chr11 47862861 47863065 -73980791 - B3 SINE B2 -6 210 2 5 950 283 376 96 58 chr11 47863099 47863463 -73980393 - L2b LINE L2 -6 3369 2992 5 950 492 348 52 19 chr11 47864605 47864816 -73979040 - MER20 DNA MER1_type -1 218 1 5 950 211 362 0 0 chr11 47865055 47865124 -73978732 + L2a LINE L2 2989 3057 -369 5 950 433 282 43 0 chr11 47865191 47865299 -73978557 - B1F2 SINE Alu -34 115 4 5 950 378 333 8 32 chr11 47865299 47865332 -73978524 - ID SINE ID -139 85 56 5 950 1076 133 0 6 chr11 47865650 47865831 -73978025 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 950 216 0 0 0 chr11 47865831 47865854 -73978002 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 950 570 171 134 31 chr11 47867809 47867936 -73975920 + B3A SINE B2 8 147 -51 5 950 483 63 0 0 chr11 47867950 47868013 -73975843 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 950 200 100 25 0 chr11 47868819 47868859 -73974997 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 950 257 235 22 120 chr11 47869065 47869157 -73974699 + Charlie26a DNA MER1_type 53 135 -190 5 950 3116 203 17 6 chr11 47869168 47869922 -73973934 - Lx2B LINE L1 -4 6996 6213 5 950 218 329 104 7 chr11 47870012 47870156 -73973700 - MIRb SINE MIR -2 266 109 5 950 532 306 76 107 chr11 47870159 47870448 -73973408 + B4 SINE B4 2 281 -11 5 950 216 205 0 0 chr11 47870468 47870507 -73973349 + (CATA)n Simple_repeat Simple_repeat 4 42 0 5 950 374 188 10 0 chr11 47870766 47870862 -73972994 + (CAT)n Simple_repeat Simple_repeat 2 98 0 5 950 1356 253 58 45 chr11 47870901 47871434 -73972422 - Lx9 LINE L1 0 7644 7105 5 950 792 303 57 17 chr11 47871443 47871846 -73972010 - L1MD2 LINE L1 -375 5984 5566 5 950 310 250 151 23 chr11 47872078 47872336 -73971520 - L1MD2 LINE L1 -847 5299 5009 5 950 376 105 0 26 chr11 47872404 47872482 -73971374 + (CCA)n Simple_repeat Simple_repeat 1 76 0 5 950 386 265 68 0 chr11 47872535 47872682 -73971174 + L1MB7 LINE L1 5994 6150 -34 5 950 270 294 41 52 chr11 47872747 47872844 -73971012 + MLT1A1 LTR MaLR 1 96 -312 5 950 1457 318 83 42 chr11 47873057 47873424 -73970432 + Lx8 LINE L1 6443 6820 -653 5 950 2667 66 113 11 chr11 47873424 47873805 -73970051 - BGLII LTR ERVK 0 421 2 5 950 1457 318 83 42 chr11 47873805 47874253 -73969603 + Lx8 LINE L1 6821 7292 -181 5 950 1467 91 0 0 chr11 47874434 47874633 -73969223 + L1_Mus2 LINE L1 6368 6566 0 5 950 216 158 0 0 chr11 47874966 47875004 -73968852 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 950 34 96 0 0 chr11 47875325 47875429 -73968427 + AT_rich Low_complexity Low_complexity 1 104 0 5 950 1029 299 108 21 chr11 47875478 47875960 -73967896 - Lx8 LINE L1 -2 7471 6948 5 950 273 357 29 44 chr11 47876060 47876264 -73967592 + MIR SINE MIR 4 202 -66 5 950 4734 114 21 33 chr11 47876398 47876659 -73967197 + Lx3C LINE L1 6225 6483 -493 5 950 5503 127 55 14 chr11 47876659 47877576 -73966280 + RMER17B LTR ERVK 1 954 -4 5 950 4734 114 21 33 chr11 47877576 47878073 -73965783 + Lx3C LINE L1 6484 6974 -2 5 950 1615 88 116 4 chr11 47878578 47878828 -73965028 - L1_Mus4 LINE L1 -1 6635 6358 5 950 318 326 48 20 chr11 47880028 47880175 -73963681 - MIR SINE MIR -82 180 30 5 950 1137 189 32 0 chr11 47880190 47880407 -73963449 - URR1B DNA MER1_type -1 224 1 5 950 629 337 114 67 chr11 47880407 47880932 -73962924 + MLT1E3 LTR MaLR 15 564 -60 5 950 331 254 68 0 chr11 47881280 47881398 -73962458 - L1ME4a LINE L1 -28 6096 5971 5 950 1025 122 70 0 chr11 47881647 47881684 -73962172 + B2_Mm2 SINE B2 4 48 -147 5 950 3116 110 7 5 chr11 47881684 47882132 -73961724 - L1_Mus3 LINE L1 -10 6628 6180 5 950 1025 122 70 0 chr11 47882132 47882266 -73961590 + B2_Mm2 SINE B2 49 186 -9 5 950 648 309 19 24 chr11 47882269 47882469 -73961387 - B3A SINE B2 -15 201 7 5 950 417 39 0 0 chr11 47882658 47882709 -73961147 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 950 369 333 41 24 chr11 47882978 47883101 -73960755 - B1F SINE Alu -13 136 12 5 950 319 313 36 72 chr11 47883101 47883116 -73960740 - ID_B1 SINE B4 -13 211 79 5 950 656 327 99 58 chr11 47884326 47884750 -73959106 - MLT1G3 LTR MaLR -54 541 51 5 950 219 103 0 0 chr11 47884756 47884795 -73959061 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 950 5082 105 14 21 chr11 47884798 47885555 -73958301 - L1_Mus3 LINE L1 -13 6625 5874 5 950 5509 125 21 1 chr11 47885556 47886530 -73957326 + L1_Mus3 LINE L1 4928 5917 -721 5 950 599 119 8 0 chr11 47887568 47887694 -73956162 + (GA)n Simple_repeat Simple_repeat 2 128 0 5 950 634 261 109 0 chr11 47887699 47887883 -73955973 + MTEa LTR MaLR 168 371 -8 5 950 344 284 46 25 chr11 47889231 47889396 -73954460 + MIR3 SINE MIR 11 184 -84 5 950 186 121 29 29 chr11 47889499 47889533 -73954323 - MIR SINE MIR -61 147 114 5 950 306 0 0 0 chr11 47889698 47889732 -73954124 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 5 950 738 257 0 0 chr11 47889757 47889897 -73953959 - RSINE1 SINE B4 -24 141 2 5 950 825 30 0 0 chr11 47889901 47890001 -73953855 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 950 387 0 0 0 chr11 47890436 47890479 -73953377 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 950 180 0 0 0 chr11 47891198 47891218 -73952638 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 950 532 318 73 71 chr11 47891518 47891625 -73952231 + L1ME1 LINE L1 5569 5678 -501 5 950 384 59 0 0 chr11 47891625 47891676 -73952180 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 950 532 318 73 71 chr11 47891676 47891978 -73951878 + L1ME1 LINE L1 5679 5979 -200 5 950 665 317 6 0 chr11 47892008 47892169 -73951687 - RSINE1 SINE B4 0 165 4 5 950 297 0 0 0 chr11 47892182 47892215 -73951641 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 5 950 24 0 0 0 chr11 47892218 47892242 -73951614 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 3742 55 0 0 chr11 47892242 47892698 -73951158 - L1_Mus1 LINE L1 -1 6566 6111 5 950 737 285 17 6 chr11 47893961 47894141 -73949715 + B4 SINE B4 2 183 -109 5 950 322 257 106 94 chr11 47894356 47894655 -73949201 + MER102c DNA MER1_type 107 417 -2011 5 950 1192 267 184 29 chr11 47895646 47896202 -73947654 + LTR48 LTR ERV1 4 645 -142 5 950 308 282 87 77 chr11 47896970 47897166 -73946690 - L2c LINE L2 0 3387 3190 5 950 664 287 54 89 chr11 47897542 47897967 -73945889 + Lx8 LINE L1 7047 7456 -17 5 950 344 332 47 68 chr11 47898164 47898400 -73945456 + L1ME1 LINE L1 5814 6044 -135 5 950 234 0 0 0 chr11 47898622 47898648 -73945208 + (T)n Simple_repeat Simple_repeat 1 26 0 6 950 509 303 59 4 chr11 47899713 47899953 -73943903 + Lx7 LINE L1 6946 7221 -252 6 950 2294 269 38 9 chr11 47900179 47900964 -73942892 + MERVL_2A-int LTR ERVL 1439 2358 -3403 6 950 260 224 234 13 chr11 47901055 47901132 -73942724 + LSU-rRNA_Hsa rRNA rRNA 255 348 -4687 6 950 236 359 62 0 chr11 47901266 47901394 -73942462 - MIRc SINE MIR -112 156 21 6 950 256 363 107 8 chr11 47902006 47902193 -73941663 - MIR SINE MIR -19 249 26 6 950 3544 8 5 0 chr11 47902327 47902721 -73941135 + MTA_Mm LTR MaLR 1 396 0 6 950 1038 182 66 14 chr11 47902783 47902995 -73940861 - URR1B DNA MER1_type 0 225 3 6 950 1052 65 0 0 chr11 47903097 47903235 -73940621 + L1_Mus1 LINE L1 6430 6567 0 6 950 219 346 18 18 chr11 47903424 47903533 -73940323 + MIR SINE MIR 151 259 -3 6 950 594 39 0 0 chr11 47903771 47903848 -73940008 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 950 195 247 95 63 chr11 47904053 47904148 -73939708 + MIRb SINE MIR 69 166 -102 6 950 319 152 0 78 chr11 47904177 47904241 -73939615 - HAL1-3A_ME LINE L1 -825 2033 1975 6 950 216 163 0 0 chr11 47904245 47904288 -73939568 + (TATG)n Simple_repeat Simple_repeat 4 46 0 6 950 442 302 71 60 chr11 47905380 47905932 -73937924 + L1MC3 LINE L1 6741 7298 -487 6 950 305 282 0 34 chr11 47905967 47906055 -73937801 + MTEb LTR MaLR 1 85 -294 6 950 252 344 0 66 chr11 47906055 47906073 -73937783 + MT2A LTR ERVL 1 99 -434 6 950 468 51 0 0 chr11 47906369 47906428 -73937428 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 950 434 275 60 32 chr11 47906630 47906848 -73937008 + L1MD3 LINE L1 7747 7970 -25 6 950 2569 198 29 0 chr11 47906970 47907451 -73936405 - Lx5 LINE L1 -3 7047 6553 6 950 192 290 32 0 chr11 47907933 47907995 -73935861 + L2a LINE L2 2073 2136 -1283 6 950 621 321 189 26 chr11 47908051 47908669 -73935187 + L2a LINE L2 2234 2952 -467 6 950 290 242 176 97 chr11 47908737 47908902 -73934954 - MER53 DNA hAT -10 183 6 6 950 195 330 161 63 chr11 47908925 47909148 -73934708 + L2a LINE L2 3143 3426 0 6 950 446 305 94 0 chr11 47910004 47910207 -73933649 - ID_B1 SINE B4 -1 223 2 6 950 201 350 60 30 chr11 47910436 47910604 -73933252 + MIRb SINE MIR 88 260 -8 6 950 303 150 19 29 chr11 47911867 47911970 -73931886 + (CAGAGA)n Simple_repeat Simple_repeat 5 106 0 6 950 1367 218 118 48 chr11 47912772 47913328 -73930528 + RMER20B LTR ERVK 10 604 -23 6 950 273 410 48 16 chr11 47913655 47913841 -73930015 + MER20B DNA MER1_type 1 192 -591 6 950 435 276 2 4 chr11 47913896 47914048 -73929808 - MLT1D LTR MaLR 0 505 317 6 950 201 150 50 0 chr11 47914192 47914232 -73929624 + (TTTAA)n Simple_repeat Simple_repeat 3 44 0 6 950 262 299 170 23 chr11 47914874 47915045 -73928811 - MLT1A1 LTR MaLR 0 408 213 6 950 300 313 10 29 chr11 47915071 47915173 -73928683 - MLT1D LTR MaLR -132 276 177 6 950 387 0 0 0 chr11 47915229 47915272 -73928584 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 950 191 265 20 0 chr11 47916594 47916643 -73927213 - L3 LINE CR1 -247 4242 4193 6 950 895 260 80 109 chr11 47917018 47917394 -73926462 - MTE2a LTR MaLR -14 365 1 6 950 649 360 113 14 chr11 47917685 47918259 -73925597 + MER44D DNA MER2_type 52 682 -23 6 950 622 121 0 17 chr11 47918416 47918534 -73925322 + (TG)n Simple_repeat Simple_repeat 2 117 0 6 950 275 345 66 25 chr11 47918620 47918816 -73925040 - L2 LINE L2 -475 2944 2741 6 950 241 208 13 40 chr11 47918947 47919022 -73924834 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 6 950 216 0 0 0 chr11 47919065 47919089 -73924767 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 950 26462 72 5 1 chr11 47919099 47922816 -73921040 + L1Md_F2 LINE L1 1855 5585 -298 6 950 7507 72 5 1 chr11 47922818 47923794 -73920062 + L1Md_F2 LINE L1 5588 6567 -15 6 950 25 31 0 0 chr11 47923794 47923826 -73920030 + AT_rich Low_complexity Low_complexity 1 32 0 6 950 216 0 0 0 chr11 47923829 47923853 -73920003 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 950 645 250 8 0 chr11 47924911 47925043 -73918813 + B1_Mur1 SINE Alu 1 133 -16 6 950 1272 248 97 20 chr11 47925340 47925682 -73918174 - ORR1D2 LTR MaLR -2 368 1 6 950 1083 259 106 15 chr11 47926697 47927038 -73916818 + Lx6 LINE L1 7077 7448 -12 6 950 711 258 137 0 chr11 47927041 47927223 -73916633 - B3 SINE B2 -7 209 3 6 950 988 251 0 18 chr11 47927622 47927649 -73916207 - B3 SINE B2 -1 215 189 6 950 450 0 0 0 chr11 47927649 47927699 -73916157 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 950 988 251 0 18 chr11 47927699 47927890 -73915966 - B3 SINE B2 -28 188 2 6 950 292 326 163 0 chr11 47929116 47929257 -73914599 - MLT1N2 LTR MaLR -2 560 397 6 950 225 308 147 44 chr11 47929694 47929830 -73914026 + MIRb SINE MIR 10 159 -109 6 950 1278 266 75 28 chr11 47931158 47931545 -73912311 + MTD LTR MaLR 1 405 -14 6 950 698 240 27 54 chr11 47931585 47931770 -73912086 - B3 SINE B2 -36 180 1 6 950 220 275 175 0 chr11 47932474 47932554 -73911302 - L2a LINE L2 -2 3424 3331 6 950 1217 240 21 17 chr11 47932643 47932931 -73910925 - B4 SINE B4 -2 290 2 6 950 181 368 98 0 chr11 47933731 47933864 -73909992 + MIRc SINE MIR 48 193 -75 6 950 504 262 181 10 chr11 47934032 47934225 -73909631 + Cheshire DNA MER1_type 52 277 -2143 6 950 295 232 19 112 chr11 47934243 47934350 -73909506 + PB1 SINE Alu 16 112 -15 6 950 250 328 73 32 chr11 47934350 47934366 -73909490 + ID_B1 SINE B4 97 224 0 6 950 656 312 48 9 chr11 47934375 47934585 -73909271 + ID_B1 SINE B4 7 224 0 6 950 962 54 8 0 chr11 47934596 47934725 -73909131 + (GGGA)n Simple_repeat Simple_repeat 3 132 0 6 950 207 138 5 25 chr11 47935689 47935740 -73908116 - MIR SINE MIR -106 156 111 6 950 451 271 150 60 chr11 47936484 47936751 -73907105 - B4 SINE B4 0 292 2 6 950 543 285 101 27 chr11 47936804 47937218 -73906638 - L1ME2 LINE L1 -169 5995 5551 6 950 507 280 162 16 chr11 47937430 47937615 -73906241 - B3 SINE B2 -4 212 1 6 950 183 300 0 39 chr11 47937759 47937811 -73906045 - L3 LINE CR1 -20 4469 4420 6 950 420 20 0 0 chr11 47937871 47937920 -73905936 + (TTG)n Simple_repeat Simple_repeat 3 51 0 6 950 523 313 0 8 chr11 47938158 47938290 -73905566 + B4A SINE B4 159 289 -3 6 950 245 306 99 53 chr11 47938945 47939076 -73904780 - MIRb SINE MIR -46 222 86 6 950 186 313 43 0 chr11 47939280 47939371 -73904485 - MIRb SINE MIR -10 258 161 6 950 21 0 0 0 chr11 47939655 47939676 -73904180 + AT_rich Low_complexity Low_complexity 1 21 0 6 950 354 23 0 0 chr11 47939745 47939788 -73904068 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 950 3297 158 160 16 chr11 47940008 47940652 -73903204 - RMER19A LTR ERVK 0 737 1 6 950 635 165 16 0 chr11 47940796 47940923 -73902933 + (CATA)n Simple_repeat Simple_repeat 2 130 0 6 950 265 279 70 0 chr11 47941206 47941292 -73902564 - MER53 DNA hAT -97 96 5 6 950 214 292 55 14 chr11 47941738 47941811 -73902045 - MIR3 SINE MIR -7 201 126 6 950 226 286 0 61 chr11 47942224 47942306 -73901550 - MTE2a LTR MaLR -45 334 258 6 950 402 21 0 0 chr11 47942408 47942455 -73901401 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 950 2449 180 5 2 chr11 47943392 47943804 -73900052 + MTC LTR MaLR 1 413 -8 6 950 231 103 0 0 chr11 47945444 47945483 -73898373 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 6 950 576 321 37 21 chr11 47945518 47945760 -73898096 + MIRb SINE MIR 17 262 -6 6 950 563 258 66 17 chr11 47946196 47946377 -73897479 + L3b LINE CR1 101 290 -192 6 950 546 232 78 72 chr11 47946713 47946866 -73896990 - B3 SINE B2 -61 155 2 6 950 214 355 73 61 chr11 47946929 47947190 -73896666 + B4A SINE B4 28 291 -1 6 950 501 32 0 0 chr11 47947240 47947303 -73896553 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 950 187 275 0 92 chr11 47948034 47948110 -73895746 + L2c LINE L2 3063 3131 -256 6 950 3181 181 20 114 chr11 47948304 47949091 -73894765 + RMER19B LTR ERVK 1 664 -238 6 950 302 255 158 11 chr11 47949214 47949309 -73894547 + RMER30 DNA MER1_type 92 200 -2 6 950 21 36 0 0 chr11 47951104 47951132 -73892724 + AT_rich Low_complexity Low_complexity 1 28 0 6 950 305 368 91 58 chr11 47951277 47951586 -73892270 + L1MEg LINE L1 198 516 -5726 6 950 331 277 66 25 chr11 47951874 47951996 -73891860 + B1F SINE Alu 23 149 0 6 950 268 358 12 0 chr11 47951997 47952078 -73891778 + ID4_ SINE ID 2 83 0 6 950 24 0 0 0 chr11 47952167 47952191 -73891665 + AT_rich Low_complexity Low_complexity 1 24 0 6 950 378 289 76 9 chr11 47952389 47952857 -73890999 + L1MEg LINE L1 5035 5538 -753 6 950 319 264 6 4 chr11 47953315 47953405 -73890451 - MTEa LTR MaLR -1 378 270 6 950 3499 289 91 69 chr11 47953398 47954781 -73889075 - ORR1E-int LTR MaLR -166 1414 1 6 950 712 314 57 95 chr11 47954783 47955152 -73888704 - ORR1E LTR MaLR 0 359 5 6 950 382 295 32 8 chr11 47955276 47955399 -73888457 - MIR SINE MIR -11 251 126 6 950 769 229 34 22 chr11 47955649 47955828 -73888028 + B3A SINE B2 2 182 -16 6 950 298 315 18 53 chr11 47956329 47956443 -73887413 + MIRb SINE MIR 80 189 -79 6 950 207 377 0 14 chr11 47956652 47956722 -73887134 - MIR SINE MIR -179 83 15 6 950 270 150 25 5 chr11 47956744 47956801 -73887055 - L1Md_T LINE L1 -368 6216 6156 6 950 735 288 141 9 chr11 47957280 47957627 -73886229 + MER113 DNA MER1_type 35 427 -94 6 950 24 0 0 0 chr11 47958532 47958556 -73885300 + AT_rich Low_complexity Low_complexity 1 24 0 6 950 382 298 106 12 chr11 47959476 47959636 -73884220 + Lx8 LINE L1 6805 6979 -494 6 950 370 307 77 15 chr11 47960290 47960485 -73883371 + L1MD LINE L1 3729 3935 -2211 7 950 919 268 9 5 chr11 47960910 47961124 -73882732 + B3 SINE B2 1 215 -1 7 950 4587 179 17 19 chr11 47961559 47962444 -73881412 + Lx2B LINE L1 6117 6999 -1 7 950 258 362 51 8 chr11 47962468 47962585 -73881271 - MLT1F2 LTR MaLR -390 170 49 7 950 289 351 53 7 chr11 47963280 47963432 -73880424 - MIR SINE MIR -14 248 90 7 950 637 289 26 22 chr11 47963631 47963840 -73880016 - B3A SINE B2 0 216 9 7 950 185 0 40 0 chr11 47965076 47965101 -73878755 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 950 469 299 7 56 chr11 47965437 47965579 -73878277 + B1F SINE Alu 6 140 -9 7 950 333 319 16 32 chr11 47965613 47965736 -73878120 + L1MEg LINE L1 1203 1323 -4919 7 950 349 244 0 24 chr11 47966315 47966399 -73877457 + RMER15 LTR ERVL 340 421 -154 7 950 252 0 0 0 chr11 47966594 47966622 -73877234 + (CTTG)n Simple_repeat Simple_repeat 4 31 0 7 950 240 35 0 0 chr11 47966643 47966672 -73877184 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 950 301 361 0 0 chr11 47966872 47966944 -73876912 + RSINE1 SINE B4 1 72 -93 7 950 291 140 0 0 chr11 47967157 47967207 -73876649 + (TTG)n Simple_repeat Simple_repeat 2 51 0 7 950 258 317 63 33 chr11 47967520 47967791 -73876065 + L1MEg LINE L1 5104 5382 -764 7 950 318 364 55 22 chr11 47967923 47968198 -73875658 + L1MEg LINE L1 5504 5787 -453 7 950 349 324 9 0 chr11 47968228 47968336 -73875520 + ID_B1 SINE B4 114 222 -2 7 950 328 243 18 12 chr11 47968541 47968712 -73875144 + (TA)n Simple_repeat Simple_repeat 2 173 0 7 950 24 0 0 0 chr11 47969297 47969321 -73874535 + AT_rich Low_complexity Low_complexity 1 24 0 7 950 709 322 46 16 chr11 47969557 47969863 -73873993 + Lx8 LINE L1 6209 6523 -950 7 950 274 250 91 47 chr11 47970911 47971074 -73872782 - MER33 DNA MER1_type -28 296 116 7 950 23 0 0 0 chr11 47971096 47971119 -73872737 + AT_rich Low_complexity Low_complexity 1 23 0 7 950 519 343 0 67 chr11 47971129 47971279 -73872577 + RSINE1 SINE B4 7 146 -19 7 950 516 331 53 113 chr11 47972023 47972245 -73871611 + MLT1A1 LTR MaLR 18 225 -183 7 950 852 29 0 0 chr11 47972245 47972348 -73871508 + (TC)n Simple_repeat Simple_repeat 2 104 0 7 118 342 0 0 0 chr11 47972348 47972385 -73871471 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 951 516 331 53 113 chr11 47972385 47972559 -73871297 + MLT1A1 LTR MaLR 226 390 -18 7 951 774 0 0 0 chr11 47972980 47973066 -73870790 + (TC)n Simple_repeat Simple_repeat 1 86 0 7 951 1481 116 35 17 chr11 47973174 47973565 -73870291 + MT2C_Mm LTR ERVL 1 475 0 7 951 1513 226 52 75 chr11 47974572 47974998 -73868858 - MTD LTR MaLR -3 416 1 7 951 655 250 199 6 chr11 47975628 47975809 -73868047 - B3 SINE B2 0 216 1 7 951 190 353 0 0 chr11 47976235 47976286 -73867570 + MIR3 SINE MIR 109 159 -49 7 951 397 253 11 0 chr11 47976362 47976457 -73867399 + MER103 DNA DNA 4 99 -67 7 951 234 174 0 0 chr11 47976883 47976929 -73866927 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 7 951 527 283 7 21 chr11 47977390 47977531 -73866325 + B1F SINE Alu 5 143 -6 7 951 195 353 19 10 chr11 47978011 47978114 -73865742 - MIRm SINE MIR -136 140 37 7 951 252 59 0 0 chr11 47978154 47978188 -73865668 + (CAG)n Simple_repeat Simple_repeat 3 36 0 7 951 185 258 63 16 chr11 47978291 47978354 -73865502 - MIRc SINE MIR -177 91 26 7 951 4649 105 23 7 chr11 47978680 47979363 -73864493 + Lx LINE L1 5957 6650 -4 7 951 462 317 178 15 chr11 47980770 47981039 -73862817 + MLT1K LTR MaLR 260 572 -23 7 951 1879 209 49 19 chr11 47981537 47981965 -73861891 + BGLII_B LTR ERVK 1 441 0 7 951 207 125 0 0 chr11 47983057 47983097 -73860759 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 7 951 739 271 61 63 chr11 47983309 47983692 -73860164 - MTE2b LTR MaLR -3 376 1 7 951 1995 162 2 25 chr11 47984344 47984737 -73859119 - L1_Mur2 LINE L1 -781 5096 4713 7 951 577 291 198 3 chr11 47985079 47985372 -73858484 + MLT1C LTR MaLR 66 415 -52 7 951 645 280 0 0 chr11 47985403 47985535 -73858321 - RSINE1 SINE B4 -11 154 23 7 951 277 220 17 0 chr11 47985554 47985613 -73858243 + MLT1C LTR MaLR 408 467 0 7 951 636 335 95 0 chr11 47985616 47985879 -73857977 - LTR16B2 LTR ERVL -41 421 134 7 951 674 301 36 25 chr11 47986510 47986789 -73857067 + B4A SINE B4 3 284 -8 7 951 201 133 0 0 chr11 47986885 47986915 -73856941 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 951 195 162 0 0 chr11 47987553 47987590 -73856266 + (CAT)n Simple_repeat Simple_repeat 2 38 0 7 951 290 282 13 0 chr11 47988115 47988193 -73855663 + ID4_ SINE ID 2 80 -3 7 951 304 260 9 80 chr11 47988221 47988334 -73855522 + PB1D10 SINE Alu 13 117 0 7 951 334 302 127 71 chr11 47988353 47988606 -73855250 + MLT1K LTR MaLR 259 525 -70 7 951 456 19 0 0 chr11 47988701 47988754 -73855102 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 951 2453 243 17 12 chr11 47989033 47989607 -73854249 - Lx5 LINE L1 0 7050 6474 7 951 863 265 8 3 chr11 47990873 47991083 -73852773 + B3A SINE B2 1 216 0 7 951 302 232 173 16 chr11 47991121 47991248 -73852608 + L1M2 LINE L1 5567 5713 -578 7 951 2195 33 7 11 chr11 47991337 47991614 -73852242 + L1Md_F3 LINE L1 6308 6583 -1 7 951 593 271 58 19 chr11 47991770 47991924 -73851932 + B3A SINE B2 23 182 -16 7 951 25 31 0 0 chr11 47992397 47992429 -73851427 + AT_rich Low_complexity Low_complexity 1 32 0 7 951 183 129 0 0 chr11 47992446 47992477 -73851379 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 7 951 476 43 29 0 chr11 47992489 47992559 -73851297 + (CAGAGA)n Simple_repeat Simple_repeat 3 74 0 7 951 893 243 17 11 chr11 47992596 47992771 -73851085 - B3 SINE B2 -40 176 1 7 951 359 247 88 88 chr11 47992890 47992992 -73850864 + ID_B1 SINE B4 105 206 -18 7 951 361 247 12 12 chr11 47993006 47993092 -73850764 + GA-rich Low_complexity Low_complexity 2 87 0 7 951 624 91 0 0 chr11 47993092 47993180 -73850676 + (GGAA)n Simple_repeat Simple_repeat 4 91 0 7 951 415 327 12 58 chr11 47993267 47993439 -73850417 + RSINE1 SINE B4 2 165 0 7 951 1154 65 24 6 chr11 47995351 47995521 -73848335 - L1Md_F3 LINE L1 -1 6583 6411 7 951 312 252 61 54 chr11 47995884 47996032 -73847824 + MIRb SINE MIR 50 199 -69 7 951 719 313 28 107 chr11 47996217 47996507 -73847349 + B4A SINE B4 6 272 -20 7 951 387 0 0 0 chr11 47997402 47997445 -73846411 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 951 182 315 19 0 chr11 47998163 47998217 -73845639 - L3 LINE CR1 -291 4198 4144 7 951 624 333 58 31 chr11 47998359 47998619 -73845237 - MLT1A0 LTR MaLR -98 267 1 7 951 234 227 61 0 chr11 47998659 47998725 -73845131 + LTR16E1 LTR ERVL 469 538 0 7 951 270 0 0 0 chr11 47999246 47999276 -73844580 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 951 378 0 0 0 chr11 47999712 47999754 -73844102 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 951 331 225 64 21 chr11 48000461 48000602 -73843254 - L1MEg LINE L1 -1684 4462 4316 1 951 343 289 114 0 chr11 48001106 48001272 -73842584 - L1MEg LINE L1 -2009 4137 3953 1 951 408 319 90 7 chr11 48001513 48001533 -73842323 - B3A SINE B2 -8 190 171 2 951 333 0 0 0 chr11 48001533 48001570 -73842286 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 951 408 319 90 7 chr11 48001570 48001694 -73842162 - B3A SINE B2 -28 170 34 2 951 342 332 132 42 chr11 48001721 48002145 -73841711 - L1MEg LINE L1 -2531 3615 3154 1 951 236 143 56 14 chr11 48002353 48002424 -73841432 - L1MEg LINE L1 -3765 2401 2328 1 951 306 328 94 72 chr11 48002456 48002775 -73841081 - L1MEg LINE L1 -4013 2229 1904 1 951 27 49 0 0 chr11 48002843 48002884 -73840972 + AT_rich Low_complexity Low_complexity 1 41 0 4 951 268 333 89 16 chr11 48003064 48003311 -73840545 - L1MEg LINE L1 -4451 1715 1451 1 951 3696 83 30 6 chr11 48003629 48004137 -73839719 + L1Md_F2 LINE L1 6050 6569 -13 5 951 256 287 50 69 chr11 48004450 48004551 -73839305 - MLT1F1 LTR MaLR -443 126 28 6 951 252 274 9 9 chr11 48004630 48004744 -73839112 - L1MEg LINE L1 -5032 1104 991 1 951 715 306 77 101 chr11 48004907 48004946 -73838910 - B4A SINE B4 0 292 267 7 951 606 63 0 0 chr11 48004946 48005025 -73838831 + (TA)n Simple_repeat Simple_repeat 1 79 0 8 951 715 306 77 101 chr11 48005025 48005283 -73838573 - B4A SINE B4 -26 266 2 7 951 255 286 0 25 chr11 48005514 48005593 -73838263 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 9 951 271 286 27 0 chr11 48006586 48006698 -73837158 + A-rich Low_complexity Low_complexity 3 117 0 1 951 292 324 116 28 chr11 48006700 48006849 -73837007 + B3A SINE B2 9 171 -27 1 951 198 400 0 12 chr11 48006919 48007005 -73836851 + L3 LINE CR1 4402 4486 -3 1 951 1374 292 57 8 chr11 48007059 48007445 -73836411 - RCHARR1 DNA MER1_type -566 408 4 1 951 301 298 147 72 chr11 48007528 48007854 -73836002 + MER34A LTR ERV1 174 523 -48 1 951 4623 116 20 58 chr11 48008651 48009411 -73834445 + Lx3C LINE L1 6244 6974 -2 1 951 245 247 13 0 chr11 48009764 48009841 -73834015 + L1M5 LINE L1 4604 4681 -1465 1 951 212 0 36 0 chr11 48010065 48010093 -73833763 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 951 625 288 57 13 chr11 48010417 48010583 -73833273 + B3A SINE B2 36 203 -13 1 951 483 186 0 0 chr11 48010583 48010685 -73833171 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 951 462 36 0 0 chr11 48010829 48010885 -73832971 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 951 22 70 0 0 chr11 48010948 48010991 -73832865 + AT_rich Low_complexity Low_complexity 1 43 0 2 951 773 151 0 7 chr11 48011170 48011323 -73832533 + GA-rich Low_complexity Low_complexity 3 154 0 2 951 218 133 0 62 chr11 48011533 48011581 -73832275 + A-rich Low_complexity Low_complexity 4 48 0 2 951 190 160 20 20 chr11 48011583 48011634 -73832222 + GA-rich Low_complexity Low_complexity 2 52 0 2 951 1145 280 37 48 chr11 48011717 48012178 -73831678 - Lx9 LINE L1 -883 6761 6306 2 951 30993 76 1 9 chr11 48012486 48017719 -73826137 + L1Md_F2 LINE L1 392 5585 -298 2 951 8147 40 7 3 chr11 48017720 48018710 -73825146 + L1Md_F2 LINE L1 5587 6580 -2 2 951 270 296 43 17 chr11 48018910 48019027 -73824829 - MER5B DNA MER1_type 0 178 59 2 951 22 70 0 0 chr11 48019603 48019646 -73824210 + AT_rich Low_complexity Low_complexity 1 43 0 2 951 731 281 6 6 chr11 48019680 48019848 -73824008 - B3A SINE B2 -30 168 1 2 951 1243 144 23 5 chr11 48019857 48020073 -73823783 - URR1B DNA MER1_type -3 222 3 3 951 420 278 132 46 chr11 48020624 48020775 -73823081 + B4A SINE B4 9 172 -120 3 951 546 323 123 33 chr11 48020866 48021199 -73822657 - MLT1A0 LTR MaLR 0 365 3 3 951 253 363 16 24 chr11 48021510 48021637 -73822219 + L1MC LINE L1 5523 5648 -2234 3 951 212 333 0 0 chr11 48021705 48021768 -73822088 + GA-rich Low_complexity Low_complexity 1 63 0 3 951 715 73 27 0 chr11 48021784 48021894 -73821962 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 3 951 411 73 0 0 chr11 48021894 48021948 -73821908 + (ACTG)n Simple_repeat Simple_repeat 2 56 0 3 951 1162 284 44 21 chr11 48022671 48022954 -73820902 + Lx6 LINE L1 7041 7333 -127 3 951 672 24 0 0 chr11 48022954 48023036 -73820820 + (TC)n Simple_repeat Simple_repeat 2 83 0 3 951 1162 284 44 21 chr11 48023036 48023137 -73820719 + Lx6 LINE L1 7334 7434 -26 3 951 325 280 53 20 chr11 48023311 48023459 -73820397 + L1_Mus1 LINE L1 5701 5868 -699 3 951 288 0 0 0 chr11 48024184 48024216 -73819640 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 951 644 167 9 0 chr11 48025987 48026213 -73817643 + (TGGA)n Simple_repeat Simple_repeat 1 228 0 4 951 504 368 12 0 chr11 48026232 48026398 -73817458 - B3A SINE B2 -30 168 1 4 951 333 289 50 50 chr11 48026416 48026536 -73817320 - L1MC1 LINE L1 -12 6321 6202 4 951 658 229 14 21 chr11 48026577 48026720 -73817136 + MTEa LTR MaLR 237 378 -1 4 951 744 191 0 29 chr11 48027252 48027383 -73816473 + B1_Mus1 SINE Alu 13 140 -8 4 951 282 56 0 0 chr11 48027383 48027419 -73816437 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 951 351 0 0 0 chr11 48027828 48027867 -73815989 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 951 292 377 8 0 chr11 48028180 48028310 -73815546 + L3 LINE CR1 3590 3720 -769 4 951 252 227 78 26 chr11 48028345 48028422 -73815434 - L2c LINE L2 -48 3339 3259 4 951 467 382 11 11 chr11 48029550 48029735 -73814121 - MLT1G LTR MaLR -2 589 405 5 951 400 227 57 0 chr11 48029752 48029840 -73814016 - B4A SINE B4 -199 93 1 5 951 234 0 0 0 chr11 48029881 48029907 -73813949 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 951 3022 66 8 2 chr11 48031016 48031410 -73812446 + MTA_Mm LTR MaLR 1 396 0 5 951 1064 277 105 16 chr11 48031591 48032020 -73811836 - Lx8 LINE L1 -9 7464 6998 5 951 336 250 42 56 chr11 48032187 48032331 -73811525 + L1MC2 LINE L1 6076 6217 -127 5 951 222 37 0 0 chr11 48032540 48032567 -73811289 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 5 951 230 352 76 30 chr11 48032882 48033107 -73810749 - MIR SINE MIR -15 253 19 5 951 303 239 27 128 chr11 48033445 48033594 -73810262 + MLT1J1 LTR MaLR 34 167 -277 5 951 360 0 0 0 chr11 48034266 48034306 -73809550 + (CATA)n Simple_repeat Simple_repeat 3 42 0 5 951 189 302 0 0 chr11 48034970 48035013 -73808843 - L2a LINE L2 -25 3401 3359 6 951 32081 87 14 7 chr11 48035565 48041750 -73802106 - L1Md_F2 LINE L1 0 6582 380 6 951 493 321 107 54 chr11 48041958 48042294 -73801562 - MLT1E1A LTR MaLR -63 617 264 6 951 285 309 70 35 chr11 48042327 48042441 -73801415 - MLT1E1A LTR MaLR -529 125 8 6 951 441 54 0 0 chr11 48043654 48043710 -73800146 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 6 951 204 320 58 10 chr11 48044056 48044160 -73799696 - L2a LINE L2 -45 3381 3273 6 951 261 333 147 31 chr11 48044367 48044686 -73799170 - L2a LINE L2 -410 3009 2654 6 951 3389 46 0 0 chr11 48045344 48045754 -73798102 - L1Md_A LINE L1 -1 6581 6172 6 951 19500 18 1 0 chr11 48045754 48048293 -73795563 - L1Md_A LINE L1 -515 6067 3527 6 951 457 379 43 8 chr11 48048313 48048547 -73795309 + L1MEc LINE L1 125 366 -6034 6 951 29037 82 54 7 chr11 48048626 48052983 -73790873 - L1Md_F2 LINE L1 -11 6571 1972 6 951 567 0 0 0 chr11 48052983 48053046 -73790810 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 951 29037 140 89 17 chr11 48053046 48054737 -73789119 - L1Md_F2 LINE L1 -3912 1971 208 6 951 1079 153 138 0 chr11 48054894 48055090 -73788766 + URR1A DNA MER1_type 2 224 -2 6 951 487 262 65 52 chr11 48055162 48055315 -73788541 + B3 SINE B2 3 157 -59 6 951 180 0 0 0 chr11 48055323 48055343 -73788513 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 951 404 343 75 36 chr11 48055616 48055894 -73787962 + L1MEc LINE L1 1017 1305 -5095 6 951 232 241 22 54 chr11 48055896 48055988 -73787868 + RMER12B LTR ERVK 1133 1221 -183 7 951 306 73 0 0 chr11 48055997 48056038 -73787818 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 7 951 298 327 18 0 chr11 48056102 48056212 -73787644 - MER5A1 DNA MER1_type -11 155 44 7 951 929 265 76 69 chr11 48056402 48056832 -73787024 + MTD LTR MaLR 1 405 -14 7 951 349 346 75 78 chr11 48056873 48057221 -73786635 + MLT1K LTR MaLR 215 561 -34 7 951 387 321 12 12 chr11 48057744 48057905 -73785951 + Lx8 LINE L1 6961 7121 -352 7 951 753 327 55 55 chr11 48059715 48060119 -73783737 + MTD LTR MaLR 1 404 -15 7 951 1163 68 0 7 chr11 48060756 48060904 -73782952 + B1_Mm SINE Alu 1 147 0 7 951 291 311 206 68 chr11 48060921 48061173 -73782683 + B4A SINE B4 1 287 -5 7 951 227 287 69 104 chr11 48061897 48062041 -73781815 - MIRb SINE MIR -104 164 26 8 951 417 39 0 0 chr11 48062390 48062441 -73781415 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8 951 601 308 87 15 chr11 48063387 48063651 -73780205 + B4A SINE B4 2 284 -8 8 951 599 276 158 0 chr11 48063954 48064276 -73779580 + MTC LTR MaLR 32 405 -14 8 951 464 405 45 12 chr11 48065235 48065565 -73778291 - LTR16A LTR ERVL -43 408 68 8 951 333 0 0 0 chr11 48066013 48066050 -73777806 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 951 297 0 0 0 chr11 48066050 48066082 -73777774 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 951 234 0 0 0 chr11 48066697 48066723 -73777133 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 951 1593 282 114 21 chr11 48066828 48067484 -73776372 + Lx8 LINE L1 6755 7471 -2 8 951 24 0 0 0 chr11 48067484 48067508 -73776348 + AT_rich Low_complexity Low_complexity 1 24 0 8 951 261 0 0 0 chr11 48067537 48067566 -73776290 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 951 612 0 0 0 chr11 48067566 48067633 -73776223 + (GA)n Simple_repeat Simple_repeat 2 69 0 9 951 960 298 54 67 chr11 48068725 48069516 -73774340 + L1MA5 LINE L1 5514 6294 -6 9 951 223 281 54 43 chr11 48070760 48070853 -73773003 - L2c LINE L2 -44 3343 3250 9 951 229 343 45 18 chr11 48071156 48071266 -73772590 - MIRc SINE MIR -151 117 5 9 951 452 176 18 9 chr11 48071375 48071484 -73772372 + Lx9 LINE L1 7396 7505 -139 9 951 227 335 49 59 chr11 48072668 48072871 -73770985 - L2a LINE L2 -5 3421 3221 9 951 290 237 12 16 chr11 48072937 48073016 -73770840 + ID4 SINE ID 12 93 -59 9 951 214 196 0 21 chr11 48073883 48073930 -73769926 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 951 195 200 167 39 chr11 48074386 48074464 -73769392 + MIR SINE MIR 94 181 -81 9 951 307 303 96 19 chr11 48075365 48075681 -73768175 + L1ME1 LINE L1 4413 4755 -1391 1 951 850 249 64 10 chr11 48075686 48075889 -73767967 - MER20 DNA MER1_type -5 214 1 1 951 534 294 113 35 chr11 48075890 48076661 -73767195 + L1ME1 LINE L1 4744 5594 -568 1 951 1292 111 0 0 chr11 48077005 48077195 -73766661 - B2_Mm2 SINE B2 -5 190 1 1 951 615 234 51 27 chr11 48077334 48077518 -73766338 - MLT1B LTR MaLR -203 171 1 1 951 670 300 71 63 chr11 48077521 48078015 -73765841 + L1ME1 LINE L1 5613 6110 -69 1 951 469 234 52 52 chr11 48078699 48078710 -73765146 + B1F SINE Alu 13 67 -82 1 951 608 204 0 27 chr11 48078710 48078821 -73765035 + ID_B1 SINE B4 105 212 -12 1 951 469 234 52 52 chr11 48078821 48078834 -73765022 + B1F SINE Alu 68 147 -2 1 951 183 310 17 33 chr11 48079337 48079397 -73764459 - L2c LINE L2 -59 3328 3270 1 951 527 0 0 16 chr11 48080134 48080198 -73763658 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 951 288 0 0 0 chr11 48080198 48080229 -73763627 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 951 569 308 43 11 chr11 48080393 48080577 -73763279 - B3A SINE B2 -7 191 2 1 951 26 74 0 0 chr11 48080932 48080986 -73762870 + AT_rich Low_complexity Low_complexity 1 54 0 1 951 189 74 0 0 chr11 48081738 48081765 -73762091 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 951 752 253 62 6 chr11 48082017 48082196 -73761660 + B3 SINE B2 1 189 -27 1 951 283 251 97 26 chr11 48082633 48082692 -73761164 + PB1D7 SINE Alu 7 115 -4 1 951 295 109 0 0 chr11 48082692 48082738 -73761118 + ID_B1 SINE B4 176 221 -3 1 951 634 344 87 38 chr11 48083100 48083447 -73760409 - MLT1A0 LTR MaLR 0 365 2 1 951 392 355 87 5 chr11 48084557 48084741 -73759115 + MIR SINE MIR 53 251 -11 1 951 252 319 73 57 chr11 48084876 48084999 -73758857 + MIRb SINE MIR 29 153 -115 1 951 262 330 9 19 chr11 48085554 48085659 -73758197 - PB1D10 SINE Alu -9 108 5 1 951 1015 311 108 40 chr11 48086297 48086725 -73757131 - MLT2B1 LTR ERVL -61 459 3 1 951 583 262 65 27 chr11 48087592 48087932 -73755924 + L1MC1 LINE L1 5142 5491 -842 1 951 744 297 50 21 chr11 48087955 48088237 -73755619 + B4A SINE B4 1 290 -2 1 951 314 226 0 9 chr11 48088283 48088390 -73755466 + (CA)n Simple_repeat Simple_repeat 1 106 0 1 951 629 288 0 24 chr11 48088418 48088628 -73755228 + L1MC1 LINE L1 5513 5717 -616 1 951 397 143 0 35 chr11 48088656 48088743 -73755113 - Lx9 LINE L1 -21 7623 7540 1 951 1161 294 69 3 chr11 48088785 48089303 -73754553 + L1MC1 LINE L1 5757 6313 -20 1 951 279 175 0 0 chr11 48089398 48089455 -73754401 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 1 951 324 250 62 0 chr11 48089473 48089553 -73754303 - PB1 SINE Alu -27 100 16 1 951 535 265 9 16 chr11 48089610 48089736 -73754120 - B1F1 SINE Alu -16 134 16 1 951 381 340 218 71 chr11 48090177 48090506 -73753350 - MER47B DNA MER2_type -3 415 39 1 951 344 200 29 0 chr11 48090491 48090561 -73753295 - MER47B DNA MER2_type -308 110 39 1 951 24 32 0 0 chr11 48090869 48090900 -73752956 + AT_rich Low_complexity Low_complexity 1 31 0 1 951 237 305 51 0 chr11 48091754 48091813 -73752043 + MER20 DNA MER1_type 1 62 -157 1 951 829 284 117 53 chr11 48092249 48092450 -73751406 - MLT1D LTR MaLR 0 505 304 1 951 805 176 202 0 chr11 48092450 48092638 -73751218 + URR1A DNA MER1_type 1 226 0 1 951 829 284 117 53 chr11 48092638 48092790 -73751066 - MLT1D LTR MaLR -202 303 129 1 951 471 279 224 35 chr11 48092790 48093076 -73750780 - MER57D LTR ERV1 0 434 95 1 951 279 266 63 0 chr11 48093218 48093297 -73750559 - MLT1D LTR MaLR -414 91 8 1 951 330 200 27 18 chr11 48093370 48093482 -73750374 + (CATA)n Simple_repeat Simple_repeat 1 113 0 1 951 423 236 0 43 chr11 48094083 48094176 -73749680 - B1F SINE Alu 0 149 61 1 951 310 194 156 9 chr11 48094212 48094321 -73749535 - Lx9 LINE L1 -1 7643 7519 1 951 180 0 0 0 chr11 48096095 48096115 -73747741 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 951 847 247 5 26 chr11 48096115 48096306 -73747550 - B3A SINE B2 -11 187 1 1 951 1302 288 32 39 chr11 48096730 48097196 -73746660 + RMER1C Other Other 374 836 -506 1 951 441 190 13 0 chr11 48097200 48097302 -73746554 + B1_Mur3 SINE Alu 42 147 -2 1 951 854 248 141 7 chr11 48097431 48097728 -73746128 - Lx8 LINE L1 -9 7464 7128 1 951 21 0 0 0 chr11 48097765 48097786 -73746070 + AT_rich Low_complexity Low_complexity 1 21 0 1 951 311 345 58 45 chr11 48097839 48098130 -73745726 + L1M5 LINE L1 5099 5393 -753 1 951 289 303 14 43 chr11 48098212 48098350 -73745506 + L1M5 LINE L1 5510 5643 -597 1 951 254 271 84 151 chr11 48098587 48098826 -73745030 + MLT1B LTR MaLR 1 223 -167 1 951 424 262 75 31 chr11 48098931 48099159 -73744697 + L1MA9 LINE L1 6001 6238 -74 1 951 666 124 0 0 chr11 48099214 48099335 -73744521 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 951 989 251 105 35 chr11 48100972 48101314 -73742542 - ORR1D2 LTR MaLR -2 368 3 1 951 189 0 0 0 chr11 48101581 48101602 -73742254 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 951 471 60 0 0 chr11 48101602 48101669 -73742187 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 951 395 366 58 39 chr11 48101669 48101930 -73741926 + MLT1B LTR MaLR 187 467 0 1 951 26 88 0 0 chr11 48102361 48102429 -73741427 + AT_rich Low_complexity Low_complexity 1 68 0 1 951 324 0 0 0 chr11 48102926 48102962 -73740894 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 951 26 88 0 0 chr11 48103038 48103106 -73740750 + AT_rich Low_complexity Low_complexity 1 68 0 1 952 459 0 0 0 chr11 48104708 48104759 -73739097 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 952 243 388 58 0 chr11 48104868 48104989 -73738867 + MLT1K LTR MaLR 180 307 -288 1 952 268 287 110 9 chr11 48105036 48105145 -73738711 + MLT1K LTR MaLR 390 509 -86 1 952 590 321 131 57 chr11 48105371 48105738 -73738118 - MLT2D LTR ERVL -15 399 6 1 952 859 271 55 0 chr11 48107605 48107786 -73736070 + ID_B1 SINE B4 3 193 -31 1 952 285 362 23 15 chr11 48108735 48108867 -73734989 + MER5A DNA MER1_type 10 142 -47 1 952 703 288 61 65 chr11 48109115 48109219 -73734637 + L1MD LINE L1 2405 2504 -3642 1 952 880 209 82 0 chr11 48109219 48109415 -73734441 + B3 SINE B2 1 212 -4 1 952 703 288 61 65 chr11 48109415 48109770 -73734086 + L1MD LINE L1 2505 2862 -3284 1 952 190 407 24 48 chr11 48110665 48110927 -73732929 + L2c LINE L2 2836 3090 -297 1 952 4145 45 0 0 chr11 48111542 48112033 -73731823 - L1Md_T LINE L1 -2 6580 6090 1 952 249 250 41 14 chr11 48112643 48112716 -73731140 + RSINE1 SINE B4 64 138 -27 1 952 468 128 0 0 chr11 48112722 48112800 -73731056 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 952 296 380 36 55 chr11 48112855 48113075 -73730781 - LTR16A LTR ERVL -165 286 71 1 952 346 284 14 0 chr11 48114675 48114749 -73729107 - ID4_ SINE ID -8 75 1 1 952 636 272 30 37 chr11 48114991 48115155 -73728701 + RSINE1 SINE B4 3 165 0 1 952 900 111 0 0 chr11 48115160 48115295 -73728561 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 1 952 280 316 86 26 chr11 48115975 48116092 -73727764 - RSINE1 SINE B4 -39 126 3 1 952 1545 97 0 0 chr11 48116633 48116861 -73726995 + L1_Mus2 LINE L1 4003 4230 -1653 1 952 7831 91 13 2 chr11 48116857 48118709 -73725147 + L1_Mus2 LINE L1 4685 6559 -7 1 952 398 20 20 0 chr11 48119647 48119698 -73724158 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 952 710 309 63 60 chr11 48119741 48120009 -73723847 - B4A SINE B4 -22 270 2 1 952 240 163 0 0 chr11 48120075 48120118 -73723738 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 952 434 285 152 43 chr11 48120418 48120638 -73723218 + MIR SINE MIR 18 248 -14 1 952 722 297 25 35 chr11 48120828 48121114 -73722742 + B4 SINE B4 2 284 -8 1 952 212 164 0 52 chr11 48121114 48121191 -73722665 + (CAGAGA)n Simple_repeat Simple_repeat 3 75 0 1 952 189 0 0 0 chr11 48121254 48121275 -73722581 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 952 441 0 0 0 chr11 48121275 48121323 -73722533 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 952 582 15 0 0 chr11 48121694 48121761 -73722095 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 952 189 0 0 0 chr11 48121761 48121781 -73722075 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 952 294 187 15 61 chr11 48122398 48122529 -73721327 - RMER17A LTR ERVK -287 464 340 1 952 242 229 157 0 chr11 48122550 48122639 -73721217 + MER113A DNA MER1_type 156 258 -56 1 952 337 298 130 0 chr11 48123225 48123356 -73720500 + MIR SINE MIR 107 254 -8 1 952 548 68 9 28 chr11 48123647 48123753 -73720103 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1 952 1021 99 65 40 chr11 48123954 48124153 -73719703 + L1_Mus3 LINE L1 6429 6632 -6 1 952 225 0 0 0 chr11 48124216 48124241 -73719615 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 952 600 368 92 15 chr11 48124313 48124639 -73719217 + MLT1A0 LTR MaLR 1 351 -14 1 952 694 273 15 25 chr11 48124656 48124859 -73718997 - ORR1E LTR MaLR -149 210 10 1 952 204 216 0 0 chr11 48125219 48125270 -73718586 + CT-rich Low_complexity Low_complexity 2 52 0 1 952 1158 58 0 0 chr11 48125751 48125889 -73717967 + B1_Mus1 SINE Alu 1 138 -10 1 952 505 230 0 66 chr11 48126098 48126219 -73717637 + RSINE1 SINE B4 53 165 0 1 952 196 361 37 55 chr11 48126394 48126558 -73717298 + L2a LINE L2 2927 3087 -339 1 952 22 0 0 0 chr11 48126721 48126743 -73717113 + GC_rich Low_complexity Low_complexity 1 22 0 1 952 637 281 128 12 chr11 48127138 48127387 -73716469 - B4A SINE B4 -14 278 1 1 952 910 193 136 11 chr11 48127972 48128334 -73715522 - MTC LTR MaLR 0 421 15 1 952 4643 194 92 32 chr11 48128404 48129485 -73714371 - MTC-int LTR MaLR -31 1227 82 1 952 521 117 0 0 chr11 48129485 48129562 -73714294 - RMER16-int LTR ERVK -1242 4164 4088 1 952 36589 40 4 3 chr11 48129584 48135799 -73708057 - L1Md_T LINE L1 -12 6573 106 1 952 393 214 30 20 chr11 48135805 48135905 -73707951 - RMER16-int LTR ERVK -1326 4080 3980 1 952 332 164 53 27 chr11 48136146 48136221 -73707635 - RMER16-int LTR ERVK -1427 3979 3903 1 952 849 131 143 0 chr11 48136223 48136391 -73707465 + L1VL4 LINE L1 499 690 -5612 1 952 1602 64 14 0 chr11 48136383 48136602 -73707254 - L1Md_F2 LINE L1 -495 6087 5866 1 952 382 58 0 55 chr11 48136602 48136675 -73707181 + L1Md_F2 LINE L1 6513 6581 -1 1 952 5324 88 57 10 chr11 48136681 48137770 -73706086 + L1VL4 LINE L1 688 1840 -1719 1 952 36340 15 2 12 chr11 48137769 48143001 -73700855 + L1Md_A LINE L1 422 5586 -297 1 952 8757 17 1 0 chr11 48143001 48143996 -73699860 + L1Md_A LINE L1 5587 6582 0 2 952 19063 150 19 4 chr11 48143997 48148745 -73695111 + Lx2 LINE L1 2183 6997 0 2 952 182 318 164 0 chr11 48148845 48148955 -73694901 - MIR SINE MIR -56 152 25 2 952 318 320 0 32 chr11 48150095 48150221 -73693635 + GA-rich Low_complexity Low_complexity 5 126 0 2 952 630 178 101 0 chr11 48150626 48150755 -73693101 - B1_Mur3 SINE Alu -1 148 7 2 952 945 281 127 13 chr11 48151790 48152247 -73691609 + Lx8 LINE L1 6830 7338 -135 2 952 183 346 101 36 chr11 48152286 48152454 -73691402 + L2c LINE L2 3148 3326 -61 2 952 1671 228 42 18 chr11 48152465 48152850 -73691006 - MTD LTR MaLR -18 401 8 2 952 213 39 0 0 chr11 48153946 48153972 -73689884 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2 952 635 268 14 0 chr11 48153977 48154119 -73689737 + ID_B1 SINE B4 79 222 -2 2 952 831 321 13 68 chr11 48154197 48154505 -73689351 - B4A SINE B4 -1 291 1 2 952 27 29 0 0 chr11 48154524 48154558 -73689298 + AT_rich Low_complexity Low_complexity 1 34 0 2 952 248 222 19 0 chr11 48154674 48154728 -73689128 + ID SINE ID 2 56 -168 2 952 251 250 72 14 chr11 48154769 48154838 -73689018 + B1F SINE Alu 48 120 -29 2 952 180 0 0 0 chr11 48154992 48155012 -73688844 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 952 228 304 30 71 chr11 48155972 48156071 -73687785 - PB1D9 SINE Alu 0 120 26 2 952 1044 186 79 5 chr11 48156981 48157170 -73686686 + B3 SINE B2 14 216 0 2 952 824 281 48 48 chr11 48157173 48157673 -73686183 + L1MA9 LINE L1 5598 6097 -215 2 952 736 238 61 24 chr11 48157682 48157762 -73686094 + ID SINE ID 1 86 -138 2 952 271 255 296 0 chr11 48157762 48157860 -73685996 + PB1 SINE Alu 1 127 0 2 952 538 285 155 36 chr11 48158551 48158802 -73685054 + B4A SINE B4 3 283 -9 2 952 351 0 0 0 chr11 48158867 48158906 -73684950 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 952 7966 26 1 0 chr11 48159202 48160730 -73683126 - L1Md_A LINE L1 -1 6581 5052 2 952 644 212 6 24 chr11 48160726 48160895 -73682961 - L1Md_F LINE L1 -6153 366 201 2 952 206 163 20 0 chr11 48160907 48160956 -73682900 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 2 952 1109 70 0 14 chr11 48160956 48161101 -73682755 - B1_Mus2 SINE Alu 0 147 5 2 952 2869 66 0 23 chr11 48161195 48161586 -73682270 + L1_Mus1 LINE L1 6206 6567 0 2 952 400 335 126 50 chr11 48161820 48162319 -73681537 + L1MEc LINE L1 315 851 -5549 2 952 382 256 15 8 chr11 48162339 48162469 -73681387 + L1MA8 LINE L1 5767 5897 -394 2 952 26 82 0 0 chr11 48162497 48162558 -73681298 + AT_rich Low_complexity Low_complexity 1 61 0 2 952 22 56 0 0 chr11 48162816 48162852 -73681004 + AT_rich Low_complexity Low_complexity 1 36 0 2 952 854 199 118 5 chr11 48162968 48163155 -73680701 + B3 SINE B2 1 208 -8 2 952 460 292 138 43 chr11 48163185 48163629 -73680227 + L1MEc LINE L1 837 1177 -5223 2 952 25 31 0 0 chr11 48163733 48163765 -73680091 + AT_rich Low_complexity Low_complexity 1 32 0 2 952 486 229 177 3 chr11 48163773 48163912 -73679944 + B3A SINE B2 4 159 -57 2 952 180 77 0 0 chr11 48163915 48163941 -73679915 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 952 22 35 0 0 chr11 48163942 48163971 -73679885 + AT_rich Low_complexity Low_complexity 1 29 0 2 952 623 272 30 18 chr11 48164070 48164403 -73679453 - L1MC LINE L1 -3029 3117 2781 2 952 386 300 27 0 chr11 48164421 48164531 -73679325 + B1F SINE Alu 11 123 -26 2 952 759 219 37 18 chr11 48164683 48164846 -73679010 - B3 SINE B2 -37 179 14 2 952 195 143 29 0 chr11 48165909 48165944 -73677912 - MIRc SINE MIR -136 132 97 2 952 185 286 190 20 chr11 48166050 48166150 -73677706 - MIRb SINE MIR -39 229 113 2 952 230 339 106 16 chr11 48167481 48167604 -73676252 + MamRep605 Unknown Unknown 490 623 -253 2 952 837 253 42 16 chr11 48167766 48167937 -73675919 + B3A SINE B2 1 175 -23 2 952 492 48 0 0 chr11 48167937 48168000 -73675856 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 952 837 253 42 16 chr11 48168000 48168021 -73675835 + B3A SINE B2 176 198 0 2 952 1384 207 123 53 chr11 48168118 48168334 -73675522 - ORR1C2 LTR MaLR 0 384 171 2 952 873 105 0 0 chr11 48168334 48168487 -73675369 + (GA)n Simple_repeat Simple_repeat 2 154 0 2 952 1384 207 123 53 chr11 48168487 48168627 -73675229 - ORR1C2 LTR MaLR -214 170 3 2 952 246 340 88 20 chr11 48168657 48168804 -73675052 - MamRep137 DNA TcMar? -47 397 241 2 952 601 272 59 59 chr11 48168918 48169121 -73674735 - MTEb LTR MaLR 0 379 177 2 952 364 260 58 7 chr11 48169136 48169291 -73674565 - Lx9 LINE L1 -1 7643 7481 2 952 312 191 53 0 chr11 48169300 48169394 -73674462 - Lx9 LINE L1 -127 7517 7419 2 952 419 236 17 113 chr11 48169379 48169618 -73674238 - Lx9 LINE L1 -116 7528 7313 2 952 594 234 48 0 chr11 48169726 48169850 -73674006 - MTEb LTR MaLR -249 130 1 2 952 432 37 0 0 chr11 48169907 48169961 -73673895 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 952 280 328 0 0 chr11 48170275 48170342 -73673514 + ID4_ SINE ID 3 69 -14 2 952 581 115 10 0 chr11 48170342 48170438 -73673418 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 952 260 337 20 0 chr11 48170438 48170536 -73673320 - MER5A1 DNA MER1_type -57 109 10 2 952 1407 92 22 0 chr11 48171597 48171782 -73672074 - B2_Mm1t SINE B2 0 193 5 2 952 180 224 109 76 chr11 48172108 48172200 -73671656 - MIRc SINE MIR -111 157 63 2 952 488 276 23 30 chr11 48172840 48172971 -73670885 - B1F SINE Alu -19 130 1 2 952 3006 53 13 0 chr11 48173355 48173753 -73670103 + BGLII LTR ERVK 1 403 -18 2 952 214 83 83 0 chr11 48173767 48173803 -73670053 + T-rich Low_complexity Low_complexity 2 40 0 2 952 765 294 51 102 chr11 48173830 48174108 -73669748 + L1MDa LINE L1 27 281 -6352 2 952 606 63 0 0 chr11 48174108 48174187 -73669669 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 2 952 339 130 0 0 chr11 48174187 48174241 -73669615 + (CAGG)n Simple_repeat Simple_repeat 2 55 0 2 952 765 294 51 102 chr11 48174241 48174374 -73669482 + L1MDa LINE L1 282 417 -6216 2 952 23 0 0 0 chr11 48174530 48174553 -73669303 + AT_rich Low_complexity Low_complexity 1 23 0 2 952 1781 201 54 51 chr11 48174566 48174736 -73669120 + ORR1D1 LTR MaLR 1 172 -202 2 952 501 47 0 0 chr11 48174736 48174800 -73669056 + (TCC)n Simple_repeat Simple_repeat 1 64 0 2 952 1781 201 54 51 chr11 48174800 48175002 -73668854 + ORR1D1 LTR MaLR 173 374 0 2 952 728 301 45 38 chr11 48175218 48175640 -73668216 - L1M2 LINE L1 -4262 2845 2421 2 952 29 47 0 0 chr11 48175640 48175683 -73668173 + AT_rich Low_complexity Low_complexity 1 43 0 2 952 636 93 0 0 chr11 48175838 48175935 -73667921 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 2 952 390 262 165 8 chr11 48175938 48176065 -73667791 - B1_Mm SINE Alu 0 147 1 2 952 274 261 164 27 chr11 48176109 48176255 -73667601 - Lx8 LINE L1 -5 7468 7303 2 952 1375 277 100 17 chr11 48176240 48176721 -73667135 - Lx8 LINE L1 -286 7187 6667 2 952 1191 48 0 24 chr11 48177233 48177403 -73666453 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 2 952 528 248 55 76 chr11 48177650 48177886 -73665970 - L1M2 LINE L1 -4998 2032 1802 2 952 180 0 0 0 chr11 48179412 48179432 -73664424 + (TTCCC)n Simple_repeat Simple_repeat 4 23 0 2 952 390 247 93 93 chr11 48180594 48180629 -73663227 - B2_Mm2 SINE B2 0 195 160 2 952 414 0 0 0 chr11 48180629 48180675 -73663181 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 952 378 0 0 0 chr11 48180675 48180716 -73663140 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 952 729 238 43 2 chr11 48180716 48180862 -73662994 - B3A SINE B2 -37 161 13 2 952 267 298 72 67 chr11 48181107 48181287 -73662569 - MER96B DNA hAT -235 182 2 2 952 38985 12 1 7 chr11 48181304 48186689 -73657167 + L1Md_A LINE L1 241 5586 -297 2 952 9489 10 0 0 chr11 48186689 48187685 -73656171 + L1Md_A LINE L1 5587 6582 0 2 952 188 374 73 18 chr11 48188267 48188376 -73655480 + MIRm SINE MIR 14 128 -148 2 952 381 256 0 12 chr11 48188633 48188716 -73655140 + B4A SINE B4 4 85 -207 2 952 754 321 33 14 chr11 48189473 48189688 -73654168 + ID_B1 SINE B4 4 222 -2 2 952 387 335 60 64 chr11 48190616 48190849 -73653007 - HERV16-int LTR ERVL -3079 1917 1686 2 952 219 140 0 0 chr11 48191151 48191201 -73652655 + (T)n Simple_repeat Simple_repeat 1 50 0 2 952 948 316 115 32 chr11 48191818 48192306 -73651550 - MER34A LTR ERV1 -23 548 1 2 952 194 284 121 33 chr11 48193308 48193399 -73650457 + L2a LINE L2 3323 3421 -5 2 952 22 0 0 0 chr11 48194825 48194847 -73649009 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 6481 76 131 10 chr11 48195953 48196934 -73646922 - L1_Mus3 LINE L1 -5 6633 5532 2 952 629 249 170 0 chr11 48197178 48197343 -73646513 - RMER30 DNA MER1_type -1 201 9 2 952 5012 176 15 20 chr11 48197671 48198583 -73645273 + RMER13B LTR ERVK 1 908 0 2 952 229 290 130 0 chr11 48198589 48198658 -73645198 + ID4_ SINE ID 2 79 -4 2 952 1909 145 125 11 chr11 48199366 48199735 -73644121 - MTC LTR MaLR -8 413 3 2 952 528 16 0 0 chr11 48199981 48200042 -73643814 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 952 630 276 75 57 chr11 48200314 48200797 -73643059 - L1MA9 LINE L1 -1543 6153 5626 2 952 3947 55 0 31 chr11 48201629 48202116 -73641740 + L1Md_F2 LINE L1 6111 6582 0 2 952 620 325 85 48 chr11 48202656 48203008 -73640848 - MLT1A0 LTR MaLR 0 365 1 2 952 282 309 66 13 chr11 48203204 48203353 -73640503 - MIR SINE MIR -8 260 100 2 952 564 15 0 0 chr11 48203929 48203994 -73639862 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 952 620 59 12 0 chr11 48203994 48204078 -73639778 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 952 24 0 0 0 chr11 48204553 48204577 -73639279 + AT_rich Low_complexity Low_complexity 1 24 0 2 952 217 293 35 0 chr11 48204970 48205028 -73638828 + ID4_ SINE ID 9 68 -15 2 952 364 298 10 41 chr11 48205844 48205942 -73637914 + RSINE1 SINE B4 2 96 -69 2 952 458 179 11 0 chr11 48205942 48206037 -73637819 + GA-rich Low_complexity Low_complexity 4 99 0 3 952 804 21 0 0 chr11 48206039 48206133 -73637723 + (GAAAA)n Simple_repeat Simple_repeat 4 97 0 3 952 432 0 0 0 chr11 48206158 48206206 -73637650 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 952 2028 161 44 14 chr11 48206361 48206721 -73637135 - RMER17A2 LTR ERVK 0 906 536 3 952 1795 225 51 18 chr11 48206780 48207174 -73636682 - MTD LTR MaLR -12 407 1 3 952 229 158 0 0 chr11 48208208 48208246 -73635610 + C573_MM Other Other 92 129 -393 3 952 384 253 82 68 chr11 48208381 48208588 -73635268 + MTEb LTR MaLR 168 379 0 3 952 2046 185 50 3 chr11 48208727 48208888 -73634968 + ORR1C1 LTR MaLR 5 165 -213 3 952 881 72 16 0 chr11 48208888 48209013 -73634843 + (TCTCCC)n Simple_repeat Simple_repeat 5 131 0 3 952 2046 185 50 3 chr11 48209013 48209208 -73634648 + ORR1C1 LTR MaLR 166 377 -1 3 952 310 321 145 13 chr11 48209226 48209453 -73634403 + L1M5 LINE L1 5132 5388 -758 3 952 615 255 61 61 chr11 48209909 48209971 -73633885 + RSINE1 SINE B4 3 63 -102 3 952 1585 186 33 155 chr11 48209971 48210397 -73633459 + ORR1D1 LTR MaLR 1 374 0 3 952 615 255 61 61 chr11 48210397 48210497 -73633359 + RSINE1 SINE B4 64 165 0 3 952 180 200 0 0 chr11 48210500 48210555 -73633301 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 3 952 25 31 0 0 chr11 48210562 48210594 -73633262 + AT_rich Low_complexity Low_complexity 1 32 0 3 952 231 325 84 0 chr11 48211249 48211332 -73632524 - Tigger5 DNA MER2_type 0 2406 2317 3 952 343 308 74 16 chr11 48211417 48211539 -73632317 - Tigger5 DNA MER2_type -2277 129 1 3 952 234 250 136 39 chr11 48211982 48212136 -73631720 + L1MA10 LINE L1 6105 6273 -61 3 952 1641 226 33 12 chr11 48212143 48212355 -73631501 - Lx6 LINE L1 -768 6692 6478 3 952 578 14 14 0 chr11 48212355 48212426 -73631430 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 952 1641 226 33 12 chr11 48212426 48212549 -73631307 - Lx6 LINE L1 -983 6477 6350 3 952 365 255 80 6 chr11 48212571 48212733 -73631123 - MTE2a LTR MaLR -212 209 37 3 952 1241 243 55 57 chr11 48213229 48213675 -73630181 + L1MA5 LINE L1 5805 6256 -44 3 952 2160 145 12 12 chr11 48213675 48214004 -73629852 - ORR1A4 LTR MaLR 0 329 1 3 952 1241 249 76 31 chr11 48214004 48214031 -73629825 + L1MA5 LINE L1 6257 6282 -18 3 952 237 272 49 12 chr11 48214216 48214298 -73629558 + MIR SINE MIR 81 165 -97 3 952 225 269 65 65 chr11 48214702 48214825 -73629031 - RMER15 LTR ERVL -194 381 259 3 952 447 316 69 86 chr11 48216563 48216854 -73627002 + MLT1K LTR MaLR 225 510 -85 3 952 204 167 0 45 chr11 48218015 48218059 -73625797 + (TTG)n Simple_repeat Simple_repeat 3 44 0 3 952 279 317 64 16 chr11 48218535 48218660 -73625196 + L2c LINE L2 3256 3386 -1 3 952 1327 251 33 10 chr11 48218804 48219110 -73624746 - Lx5 LINE L1 -17 7033 6721 3 952 1885 197 189 20 chr11 48219110 48219561 -73624295 - RLTR11A LTR ERVK 0 528 2 3 952 7215 185 41 8 chr11 48219563 48220848 -73623008 - MYSERV16_I-int LTR ERVK -1 2325 1000 3 952 1118 82 0 6 chr11 48220848 48221008 -73622848 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 3 952 7215 185 41 8 chr11 48221008 48221159 -73622697 - MYSERV16_I-int LTR ERVK -1327 999 842 3 952 2723 237 53 18 chr11 48221163 48221338 -73622518 - Lx5 LINE L1 -304 6746 6580 3 952 2813 169 252 15 chr11 48221338 48221934 -73621922 - RMER19A LTR ERVK 0 737 1 3 952 2723 237 53 18 chr11 48221934 48222345 -73621511 - Lx5 LINE L1 -471 6579 6154 3 952 369 0 0 0 chr11 48222345 48222386 -73621470 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 952 2086 223 71 4 chr11 48222386 48222456 -73621400 - Lx5 LINE L1 -897 6153 6068 3 952 1190 225 145 22 chr11 48222457 48222993 -73620863 + RMER20B LTR ERVK 1 602 -25 3 952 1235 184 48 48 chr11 48222996 48223231 -73620625 - Lx5 LINE L1 -964 6086 5845 3 952 4142 89 103 53 chr11 48223231 48223946 -73619910 - RMER17A LTR ERVK 0 751 1 3 952 1235 184 48 48 chr11 48223946 48224009 -73619847 - Lx5 LINE L1 -1206 5844 5787 3 952 210 37 0 0 chr11 48224009 48224036 -73619820 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 952 8197 47 2 5 chr11 48224036 48225124 -73618732 - L1Md_F2 LINE L1 -15 6567 5483 3 952 2828 145 0 11 chr11 48225123 48225568 -73618288 - Lx5 LINE L1 -106 5771 5332 3 952 203 349 46 31 chr11 48225765 48225895 -73617961 - L3 LINE CR1 -197 4292 4161 3 952 256 247 27 27 chr11 48226038 48226113 -73617743 + PB1D10 SINE Alu 43 117 0 3 952 257 295 62 9 chr11 48229925 48230038 -73613818 - MIRb SINE MIR -46 222 104 3 952 291 326 107 0 chr11 48230083 48230279 -73613577 - MIR SINE MIR -4 258 42 3 952 404 327 0 18 chr11 48230559 48230671 -73613185 - MER5A DNA MER1_type -34 155 46 3 952 299 310 35 0 chr11 48230868 48230981 -73612875 + LTR53 LTR ERVL 229 345 -174 3 952 725 198 0 8 chr11 48231406 48231675 -73612181 + CT-rich Low_complexity Low_complexity 1 266 0 3 952 865 319 20 27 chr11 48232622 48232922 -73610934 + Tigger7 DNA MER2_type 9 306 -2185 3 952 299 289 10 0 chr11 48232904 48233001 -73610855 + Tigger7 DNA MER2_type 2157 2254 -237 3 952 305 280 69 10 chr11 48233077 48233155 -73610701 + B4A SINE B4 180 263 -29 3 952 345 117 0 0 chr11 48233155 48233215 -73610641 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 952 305 280 69 10 chr11 48233215 48233237 -73610619 + B4A SINE B4 264 286 -6 3 952 232 264 21 21 chr11 48233244 48233337 -73610519 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 3 952 697 255 38 24 chr11 48233353 48233562 -73610294 - B3 SINE B2 0 216 5 3 952 351 113 0 0 chr11 48233563 48233616 -73610240 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 952 963 292 61 108 chr11 48233620 48234231 -73609625 - RLTR18 LTR ERVK -4 612 31 3 952 288 0 0 0 chr11 48234249 48234281 -73609575 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 952 342 0 0 0 chr11 48234328 48234366 -73609490 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 14 217 238 67 56 chr11 48234495 48234584 -73609272 - MIR SINE MIR -78 184 95 3 953 182 317 48 12 chr11 48234775 48234858 -73608998 - MIR SINE MIR -165 97 12 3 953 288 304 52 73 chr11 48234861 48235191 -73608665 - MER33 DNA MER1_type 0 324 2 3 953 526 316 56 44 chr11 48236943 48237284 -73606572 + L1MB5 LINE L1 5746 6090 -84 3 953 207 0 0 0 chr11 48237861 48237884 -73605972 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 953 411 289 52 37 chr11 48238019 48238291 -73605565 - L1MA4 LINE L1 -274 6023 5745 3 953 315 266 74 141 chr11 48238416 48238565 -73605291 - B4A SINE B4 -152 140 2 3 953 358 274 12 0 chr11 48238987 48239071 -73604785 - RSINE1 SINE B4 -49 116 32 3 953 254 270 0 13 chr11 48239361 48239436 -73604420 + (ATG)n Simple_repeat Simple_repeat 3 76 0 3 953 201 74 0 0 chr11 48240488 48240515 -73603341 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 3 953 246 32 0 0 chr11 48240653 48240684 -73603172 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 953 27 0 0 0 chr11 48240904 48240931 -73602925 + AT_rich Low_complexity Low_complexity 1 27 0 3 953 21 36 0 0 chr11 48241280 48241308 -73602548 + AT_rich Low_complexity Low_complexity 1 28 0 3 953 565 268 77 6 chr11 48241454 48241623 -73602233 + B3A SINE B2 14 194 -4 3 953 259 396 77 48 chr11 48242561 48242768 -73601088 + LTR16B1 LTR ERVL 6 218 -262 3 953 3115 156 23 13 chr11 48243000 48243532 -73600324 - Lx2 LINE L1 0 6997 6461 3 953 405 0 0 0 chr11 48243700 48243745 -73600111 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 953 208 342 88 14 chr11 48244492 48244640 -73599216 - MIRb SINE MIR -33 235 77 3 953 564 15 0 0 chr11 48244825 48244890 -73598966 + (TTCTC)n Simple_repeat Simple_repeat 5 69 0 3 953 366 80 0 0 chr11 48244890 48244940 -73598916 + (TCCC)n Simple_repeat Simple_repeat 2 51 0 3 953 909 253 121 24 chr11 48246499 48246831 -73597025 + MTD LTR MaLR 5 368 -51 3 953 321 362 11 0 chr11 48248393 48248487 -73595369 + ID_B1 SINE B4 82 176 -48 3 953 317 363 10 0 chr11 48248398 48248500 -73595356 + PB1D10 SINE Alu 6 108 -9 3 953 184 368 0 0 chr11 48248548 48248624 -73595232 - MIRc SINE MIR -118 150 75 3 953 255 380 68 28 chr11 48248712 48248855 -73595001 + LTR33 LTR ERVL 12 153 -362 3 953 1524 69 0 19 chr11 48248855 48249063 -73594793 + L1Md_F3 LINE L1 6381 6584 0 3 953 255 380 68 28 chr11 48249063 48249095 -73594761 + LTR33 LTR ERVL 154 194 -321 3 953 1411 282 63 40 chr11 48249158 48249721 -73594135 + Lx6 LINE L1 6487 7433 -27 3 953 1174 95 6 6 chr11 48249832 48250012 -73593844 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 953 273 57 0 0 chr11 48250098 48250133 -73593723 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 953 351 0 0 0 chr11 48251160 48251199 -73592657 + (T)n Simple_repeat Simple_repeat 1 39 0 3 953 229 213 0 51 chr11 48251474 48251530 -73592326 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 3 953 1207 62 0 0 chr11 48251530 48251676 -73592180 - B1_Mus1 SINE Alu 0 148 3 3 953 229 213 0 51 chr11 48251676 48251698 -73592158 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 953 243 88 0 0 chr11 48253901 48253935 -73589921 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 3 953 287 228 70 39 chr11 48254368 48254496 -73589360 - Lx9 LINE L1 -1 7643 7512 3 953 539 162 0 0 chr11 48254499 48254579 -73589277 - Lx9 LINE L1 -400 7244 7165 3 953 266 329 62 20 chr11 48254674 48254820 -73589036 + L1MA4 LINE L1 5624 5775 -516 3 953 922 40 0 16 chr11 48254856 48254984 -73588872 + B1_Mm SINE Alu 1 126 -21 3 953 405 102 0 0 chr11 48254994 48255053 -73588803 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 953 398 248 42 13 chr11 48255053 48255184 -73588672 + L1MA4 LINE L1 5805 5938 -218 3 953 841 172 28 0 chr11 48255359 48255504 -73588352 - B1_Mur4 SINE Alu 0 150 2 3 953 201 387 26 46 chr11 48255802 48255997 -73587859 + MIR SINE MIR 2 192 -70 3 953 1976 170 75 32 chr11 48257092 48257494 -73586362 - MTC LTR MaLR -2 419 1 3 953 1884 243 9 35 chr11 48257630 48258056 -73585800 + Lx6 LINE L1 7046 7460 0 3 953 1231 229 101 21 chr11 48258067 48258442 -73585414 + MTD LTR MaLR 1 405 -14 3 953 3493 28 2 0 chr11 48259372 48259767 -73584089 - MTA_Mm LTR MaLR 0 396 1 3 953 22 35 0 0 chr11 48259958 48259987 -73583869 + AT_rich Low_complexity Low_complexity 1 29 0 3 953 705 243 26 0 chr11 48262368 48262520 -73581336 + B3A SINE B2 2 157 -41 3 953 21 36 0 0 chr11 48262559 48262587 -73581269 + AT_rich Low_complexity Low_complexity 1 28 0 3 953 244 301 71 13 chr11 48263033 48263188 -73580668 + L1MB4 LINE L1 6011 6174 -6 3 953 267 352 18 66 chr11 48263199 48263366 -73580490 - LTR16B2 LTR ERVL -58 405 247 3 953 478 326 27 0 chr11 48263381 48263565 -73580291 - LTR16B2 LTR ERVL -266 196 8 3 953 351 278 84 34 chr11 48264807 48264926 -73578930 + PB1D10 SINE Alu 1 125 -2 3 953 36218 48 0 5 chr11 48265359 48270834 -73573022 + L1Md_T LINE L1 44 5589 -297 4 953 8638 31 0 0 chr11 48270834 48271830 -73572026 + L1Md_T LINE L1 5590 6585 0 4 953 697 291 81 16 chr11 48272636 48272894 -73570962 + B4A SINE B4 1 275 -17 4 953 2289 264 51 15 chr11 48273708 48274648 -73569208 + Lx6 LINE L1 6138 7450 -10 4 953 1508 145 94 129 chr11 48274773 48275114 -73568742 + ORR1A4 LTR MaLR 1 329 0 4 953 1742 158 22 3 chr11 48275114 48275438 -73568418 + ORR1A4-int LTR MaLR 15 344 -1619 4 953 318 183 0 0 chr11 48275473 48275533 -73568323 + ORR1A4-int LTR MaLR 305 364 -1599 4 953 3580 268 57 20 chr11 48275550 48276547 -73567309 - Lx8 LINE L1 -219 7254 6221 4 953 315 0 0 0 chr11 48276651 48276686 -73567170 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 953 201 133 0 0 chr11 48276712 48276742 -73567114 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 953 194 385 18 0 chr11 48276841 48276950 -73566906 - MIRb SINE MIR -64 204 94 4 953 945 106 116 74 chr11 48278701 48278882 -73564974 - URR1A DNA MER1_type -2 224 43 4 953 3282 41 0 0 chr11 48278882 48279271 -73564585 + L1Md_T LINE L1 6194 6582 0 4 953 945 106 116 74 chr11 48279271 48279304 -73564552 - URR1A DNA MER1_type -184 42 3 4 953 421 297 0 41 chr11 48280161 48280284 -73563572 - B4 SINE B4 -14 278 161 4 953 971 174 108 0 chr11 48280371 48280566 -73563290 + MTC LTR MaLR 1 216 -205 4 953 39103 10 0 7 chr11 48280573 48285757 -73558099 + L1Md_A LINE L1 445 5586 -297 4 953 9208 2 0 0 chr11 48285757 48286753 -73557103 + L1Md_A LINE L1 5587 6582 0 4 953 21796 9 3 0 chr11 48286765 48289214 -73554642 + L1Md_A LINE L1 3132 5586 -297 4 953 9000 14 0 0 chr11 48289214 48290210 -73553646 + L1Md_A LINE L1 5587 6582 0 4 953 1148 152 8 55 chr11 48290211 48290448 -73553408 + MTC LTR MaLR 196 421 0 4 953 235 248 178 0 chr11 48290553 48290654 -73553202 + MLT1C LTR MaLR 6 124 -343 4 953 3135 294 72 30 chr11 48290654 48291892 -73551964 + Lx8 LINE L1 4906 6198 -1275 4 953 330 67 0 0 chr11 48291892 48291937 -73551919 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 953 3135 304 145 34 chr11 48291937 48292127 -73551729 + Lx8 LINE L1 6199 6421 -1052 4 953 1358 206 131 15 chr11 48292127 48292462 -73551394 + ORR1D1 LTR MaLR 1 374 0 4 953 3135 304 145 34 chr11 48292462 48293392 -73550464 + Lx8 LINE L1 6422 7471 -2 4 953 572 313 26 48 chr11 48293425 48293697 -73550159 + MLT1C LTR MaLR 201 466 -1 4 953 523 298 44 22 chr11 48293721 48293903 -73549953 - MER5A DNA MER1_type 0 189 4 4 953 201 368 30 4 chr11 48294763 48294891 -73548965 - L2b LINE L2 -9 3417 3287 4 953 201 39 0 0 chr11 48295111 48295137 -73548719 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 953 219 236 0 0 chr11 48295279 48295351 -73548505 + GA-rich Low_complexity Low_complexity 4 75 0 4 953 725 293 74 14 chr11 48295554 48295917 -73547939 + L1MA4 LINE L1 5537 5921 -379 4 953 339 171 66 0 chr11 48296104 48296180 -73547676 - MTEb LTR MaLR 0 379 299 4 953 1864 147 45 76 chr11 48296981 48297378 -73546478 + RMER1C Other Other 957 1341 -1 4 953 6288 183 50 6 chr11 48299237 48300425 -73543431 + Lx2B LINE L1 5759 6998 -2 4 953 244 227 104 15 chr11 48300981 48301048 -73542808 + ID4_ SINE ID 2 74 -9 4 953 715 264 60 60 chr11 48300993 48301243 -73542613 + B4A SINE B4 14 263 -29 4 953 396 0 0 0 chr11 48301249 48301293 -73542563 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 953 2818 194 86 35 chr11 48301300 48301962 -73541894 - Lx9 LINE L1 -804 6840 6145 4 953 396 194 168 22 chr11 48302104 48302241 -73541615 + Lx5 LINE L1 6894 7050 0 4 953 8726 22 0 0 chr11 48303037 48304710 -73539146 - L1Md_A LINE L1 0 6582 4910 4 953 473 322 48 0 chr11 48305611 48305757 -73538099 + RSINE1 SINE B4 3 155 -10 4 953 585 24 24 12 chr11 48305768 48305852 -73538004 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 4 953 2139 143 64 9 chr11 48305859 48306204 -73537652 - ORR1B2 LTR MaLR 0 367 4 4 953 345 47 0 0 chr11 48306204 48306247 -73537609 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 953 183 42 0 0 chr11 48306412 48306436 -73537420 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 953 1072 267 88 23 chr11 48307534 48307887 -73535969 + MTD LTR MaLR 10 385 -34 4 953 363 351 107 12 chr11 48308444 48308686 -73535170 - MLT1I LTR MaLR -2 409 145 4 953 349 343 78 43 chr11 48309253 48309509 -73534347 - LTR85b LTR Gypsy? -28 756 492 4 953 349 244 223 24 chr11 48309748 48309914 -73533942 - ID_B1 SINE B4 -19 205 7 4 953 226 339 192 0 chr11 48310664 48310841 -73533015 - L2a LINE L2 0 3426 3216 4 953 271 213 0 62 chr11 48311086 48311151 -73532705 + Charlie12 DNA MER1_type 2811 2871 -2 4 953 186 253 43 117 chr11 48311346 48311440 -73532416 + MIR SINE MIR 63 149 -113 4 953 698 283 47 14 chr11 48311481 48311696 -73532160 + ID_B1 SINE B4 1 222 -2 4 953 3899 213 73 98 chr11 48311744 48312976 -73530880 + RMER1B Other Other 1 1029 -1 4 953 1305 288 44 22 chr11 48314174 48314625 -73529231 - MT2A LTR ERVL 0 533 73 4 953 322 319 27 34 chr11 48314577 48314726 -73529130 - MTD LTR MaLR -269 150 3 4 953 342 0 0 0 chr11 48315489 48315527 -73528329 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 953 598 195 24 8 chr11 48315625 48315749 -73528107 + RSINE1 SINE B4 2 127 -38 4 953 186 118 0 0 chr11 48315751 48315785 -73528071 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 953 244 294 58 16 chr11 48315933 48316054 -73527802 + L2b LINE L2 3148 3273 -102 4 953 2002 127 6 72 chr11 48316806 48317155 -73526701 - ORR1A3 LTR MaLR 0 326 1 4 953 223 146 18 18 chr11 48317205 48317261 -73526595 + GA-rich Low_complexity Low_complexity 3 58 0 4 953 788 265 141 35 chr11 48317394 48317769 -73526087 + RMER13A LTR ERVK 98 512 -348 4 953 181 315 74 0 chr11 48318323 48318431 -73525425 + MIRb SINE MIR 110 225 -43 4 953 294 29 0 0 chr11 48318776 48318811 -73525045 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 953 978 260 36 12 chr11 48318973 48319226 -73524630 + MTEa LTR MaLR 113 371 -8 4 953 2087 143 39 57 chr11 48319378 48319763 -73524093 - ORR1C1 LTR MaLR 0 378 1 4 953 1256 147 65 35 chr11 48320930 48321162 -73522694 - Lx4B LINE L1 -4 7054 6816 4 953 385 276 95 14 chr11 48321326 48321473 -73522383 + MER58A DNA MER1_type 51 209 -15 4 953 932 88 0 7 chr11 48321511 48321648 -73522208 + (TTTC)n Simple_repeat Simple_repeat 3 138 0 4 953 673 214 80 10 chr11 48321834 48322038 -73521818 + B3A SINE B2 2 216 0 4 953 786 11 0 0 chr11 48322225 48322316 -73521540 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 953 492 207 14 14 chr11 48322318 48322460 -73521396 + GA-rich Low_complexity Low_complexity 3 144 0 4 953 339 378 7 0 chr11 48322502 48322645 -73521211 + MIRb SINE MIR 114 257 -11 4 953 15443 47 4 4 chr11 48322711 48325324 -73518532 - L1Md_F2 LINE L1 -2 6580 3965 4 953 556 330 65 21 chr11 48325550 48325829 -73518027 + RMER15 LTR ERVL 280 570 -5 4 953 299 314 59 0 chr11 48325970 48326088 -73517768 - MIR SINE MIR -87 175 51 4 953 1897 209 46 2 chr11 48328439 48328833 -73515023 + MTD LTR MaLR 1 411 -8 4 953 898 240 128 22 chr11 48329768 48330126 -73513730 - MTD LTR MaLR -14 405 10 4 953 3562 119 178 116 chr11 48330296 48331149 -73512707 - RMER17A2 LTR ERVK 0 906 1 4 953 209 280 0 0 chr11 48331476 48331526 -73512330 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4 953 217 158 189 89 chr11 48331841 48331931 -73511925 + MIR3 SINE MIR 90 188 -20 4 953 824 108 0 8 chr11 48333514 48333645 -73510211 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 4 953 4857 56 5 3 chr11 48335039 48335644 -73508212 - L1Md_F2 LINE L1 -15 6567 5962 4 953 552 280 169 64 chr11 48335650 48335945 -73507911 + RCHARR1 DNA MER1_type 3 328 -646 4 953 612 226 23 0 chr11 48335954 48336087 -73507769 - B3 SINE B2 0 216 81 4 953 1902 201 32 57 chr11 48336133 48336637 -73507219 + RCHARR1 DNA MER1_type 331 821 -153 4 953 3695 151 138 42 chr11 48336637 48337645 -73506211 + RMER17B LTR ERVK 1 954 -4 4 953 420 111 0 0 chr11 48337739 48337802 -73506054 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 953 611 246 29 0 chr11 48337845 48337983 -73505873 - B3A SINE B2 -54 144 3 4 953 1657 209 197 37 chr11 48338194 48338712 -73505144 + RMER20B LTR ERVK 1 601 -26 4 953 343 390 7 0 chr11 48339581 48339727 -73504129 + MLT1L LTR MaLR 336 482 -128 4 953 383 241 0 0 chr11 48339846 48339925 -73503931 - B3A SINE B2 -119 79 1 4 953 270 231 13 0 chr11 48340102 48340180 -73503676 - MER113 DNA MER1_type -1 520 442 4 953 477 299 8 0 chr11 48340175 48340309 -73503547 - ID_B1 SINE B4 0 224 90 4 953 1422 240 35 15 chr11 48340758 48341100 -73502756 + MTE2b LTR MaLR 1 349 -30 4 953 357 266 76 50 chr11 48341183 48341302 -73502554 - RSINE1 SINE B4 -38 127 6 4 953 261 139 0 0 chr11 48341307 48341350 -73502506 + MTE2b LTR MaLR 337 379 0 4 953 5874 107 21 13 chr11 48341381 48342245 -73501611 - Lx LINE L1 -1 6653 5783 4 953 4020 76 0 0 chr11 48342243 48342758 -73501098 - L1Md_T LINE L1 0 6582 6068 4 953 351 234 26 0 chr11 48342927 48343004 -73500852 + PB1D10 SINE Alu 39 117 0 4 953 41951 5 0 0 chr11 48343068 48349649 -73494207 - L1Md_A LINE L1 0 6582 1 4 953 8330 130 19 2 chr11 48349654 48350923 -73492933 - L1_Mm LINE L1 -87 5796 4506 4 953 399 296 133 0 chr11 48351320 48351523 -73492333 + MIR SINE MIR 22 251 -11 4 953 465 246 188 0 chr11 48353149 48353287 -73490569 + ID_B1 SINE B4 2 165 -59 4 953 198 0 0 0 chr11 48353339 48353361 -73490495 + (GGAA)n Simple_repeat Simple_repeat 2 23 0 4 953 793 180 110 42 chr11 48353476 48353667 -73490189 + B3 SINE B2 13 216 0 4 953 570 319 79 30 chr11 48353765 48354069 -73489787 + Lx8 LINE L1 7152 7470 -3 4 953 418 243 19 10 chr11 48354795 48354899 -73488957 - B3 SINE B2 -111 105 1 4 953 265 308 78 39 chr11 48355248 48355298 -73488558 + MER5A DNA MER1_type 2 51 -138 4 953 1718 163 6 90 chr11 48355298 48355655 -73488201 - ORR1A4 LTR MaLR 0 329 3 5 953 265 308 78 39 chr11 48355655 48355783 -73488073 + MER5A DNA MER1_type 52 186 -3 4 953 634 278 5 83 chr11 48356233 48356425 -73487431 + Lx8 LINE L1 6832 7008 -465 5 953 742 250 12 6 chr11 48356427 48356596 -73487260 + B3 SINE B2 5 174 -42 5 953 506 287 71 16 chr11 48356692 48356876 -73486980 + B3A SINE B2 5 198 0 5 953 453 333 7 7 chr11 48358018 48358169 -73485687 + B4A SINE B4 14 164 -128 5 953 239 309 20 10 chr11 48358213 48358311 -73485545 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 953 686 194 113 0 chr11 48359797 48359921 -73483935 + B1_Mur4 SINE Alu 2 139 -11 5 953 725 306 63 46 chr11 48360166 48360450 -73483406 + B4A SINE B4 4 292 0 5 953 226 258 15 15 chr11 48360450 48360517 -73483339 + (CATA)n Simple_repeat Simple_repeat 1 67 0 5 953 207 69 0 0 chr11 48360517 48360546 -73483310 + (TAGA)n Simple_repeat Simple_repeat 3 31 0 5 953 809 77 17 0 chr11 48360553 48360670 -73483186 + (GAAA)n Simple_repeat Simple_repeat 3 121 0 5 953 188 143 0 23 chr11 48360672 48360715 -73483141 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 5 953 1404 249 68 8 chr11 48361393 48361745 -73482111 - MTD LTR MaLR -16 403 31 5 953 242 295 41 31 chr11 48362887 48362927 -73480929 + B4A SINE B4 3 42 -250 5 953 180 0 0 0 chr11 48362927 48362947 -73480909 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 953 298 337 274 20 chr11 48362947 48363146 -73480710 + B4A SINE B4 43 292 0 5 953 1201 49 7 0 chr11 48363216 48363359 -73480497 + B1_Mm SINE Alu 1 144 -3 5 953 243 0 0 0 chr11 48363359 48363386 -73480470 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 953 1428 112 9 0 chr11 48363440 48363655 -73480201 + RMER17B LTR ERVK 1 217 -741 5 953 530 152 161 8 chr11 48363652 48363805 -73480051 + RMER17B LTR ERVK 456 680 -226 5 953 710 235 111 10 chr11 48363960 48364158 -73479698 - ID_B1 SINE B4 -5 219 2 5 953 330 309 47 0 chr11 48364220 48364330 -73479526 + PB1D10 SINE Alu 3 116 -1 5 953 238 262 0 0 chr11 48364338 48364399 -73479457 - L1MCc LINE L1 -4995 1428 1368 5 953 503 281 55 0 chr11 48364408 48364536 -73479320 - ID_B1 SINE B4 -9 215 81 5 953 195 129 0 0 chr11 48365456 48365487 -73478369 + (TCC)n Simple_repeat Simple_repeat 3 33 0 5 954 907 61 23 0 chr11 48366671 48366802 -73477054 - L1Md_F2 LINE L1 -2 6580 6447 5 954 778 327 22 41 chr11 48366935 48367299 -73476557 - MLT1A0 LTR MaLR -8 357 1 5 954 225 397 8 8 chr11 48367404 48367531 -73476325 - MIR SINE MIR -107 155 29 5 954 789 251 28 6 chr11 48368478 48368654 -73475202 + B3A SINE B2 3 182 -16 5 954 734 207 6 0 chr11 48368674 48368853 -73475003 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 954 390 250 190 43 chr11 48368928 48369091 -73474765 + B3A SINE B2 2 188 -10 5 954 5688 67 3 4 chr11 48369576 48370307 -73473549 + L1_Mus4 LINE L1 5901 6630 -6 5 954 1279 156 0 55 chr11 48371144 48371382 -73472474 - URR1B DNA MER1_type 0 225 1 5 954 288 331 20 99 chr11 48371382 48371533 -73472323 + MTEa LTR MaLR 25 163 -216 5 954 342 0 0 0 chr11 48371533 48371571 -73472285 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 954 343 231 22 15 chr11 48371571 48371707 -73472149 + GA-rich Low_complexity Low_complexity 1 137 0 5 954 667 215 152 6 chr11 48371707 48371885 -73471971 + MTEa LTR MaLR 168 371 -8 5 954 339 25 0 0 chr11 48372102 48372142 -73471714 + (TTG)n Simple_repeat Simple_repeat 3 42 0 5 954 432 188 11 39 chr11 48372142 48372281 -73471575 + (CTTG)n Simple_repeat Simple_repeat 1 135 0 5 954 2818 62 40 25 chr11 48372281 48372680 -73471176 - MTB_Mm LTR MaLR 0 407 3 5 954 265 269 16 25 chr11 48372680 48372793 -73471063 + (TTGG)n Simple_repeat Simple_repeat 4 115 0 5 954 199 150 16 16 chr11 48372799 48372860 -73470996 + (CTTG)n Simple_repeat Simple_repeat 3 63 0 5 954 414 127 0 0 chr11 48373286 48373349 -73470507 + RLTR9B LTR ERVK 1 63 -374 5 954 639 148 0 0 chr11 48373346 48373447 -73470409 + RLTR9B LTR ERVK 337 437 0 5 954 753 85 0 0 chr11 48373447 48373553 -73470303 + (TTC)n Simple_repeat Simple_repeat 2 107 0 5 954 271 231 33 0 chr11 48374452 48374543 -73469313 + (CTTG)n Simple_repeat Simple_repeat 1 94 0 5 954 835 204 35 40 chr11 48375357 48375556 -73468300 + B3A SINE B2 1 198 0 5 954 456 304 47 13 chr11 48375594 48375744 -73468112 + RSINE1 SINE B4 3 157 -8 5 954 22 56 0 0 chr11 48375753 48375789 -73468067 + AT_rich Low_complexity Low_complexity 1 36 0 5 954 223 360 50 0 chr11 48377481 48377581 -73466275 + MIR SINE MIR 21 125 -137 5 954 363 78 0 0 chr11 48378008 48378059 -73465797 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 954 1321 314 40 31 chr11 48378059 48378539 -73465317 - Lx8 LINE L1 -146 7327 6844 5 954 561 30 0 0 chr11 48378740 48378807 -73465049 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 954 775 173 37 12 chr11 48379732 48379896 -73463960 + Lx7 LINE L1 7529 7696 0 5 954 499 293 21 21 chr11 48380182 48380198 -73463658 - ID_B1 SINE B4 0 224 209 5 954 369 0 0 0 chr11 48380198 48380239 -73463617 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 5 954 499 293 21 21 chr11 48380239 48380365 -73463491 - ID_B1 SINE B4 -16 208 82 5 954 296 284 0 0 chr11 48380863 48380951 -73462905 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 954 453 19 0 0 chr11 48382706 48382760 -73461096 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 954 609 143 125 0 chr11 48382923 48383035 -73460821 + ORR1B1 LTR MaLR 183 308 -86 5 954 4762 221 71 6 chr11 48383186 48384085 -73459771 + RMER1B Other Other 2 935 -131 5 954 222 37 0 0 chr11 48384085 48384112 -73459744 + (GGTTG)n Simple_repeat Simple_repeat 2 28 0 5 954 4762 221 71 6 chr11 48384112 48384198 -73459658 + RMER1B Other Other 936 1050 -16 5 954 961 209 19 19 chr11 48384219 48384429 -73459427 + B3 SINE B2 1 210 -6 5 954 536 324 58 8 chr11 48384471 48384729 -73459127 + L1ME1 LINE L1 5746 6016 -163 5 954 825 176 81 0 chr11 48384764 48384912 -73458944 - B3 SINE B2 -55 161 2 5 954 501 17 0 0 chr11 48385380 48385438 -73458418 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 954 668 213 96 18 chr11 48385450 48385617 -73458239 - B3A SINE B2 -17 181 2 5 954 8926 81 11 13 chr11 48386764 48388671 -73455185 + L1VL4 LINE L1 191 2109 -1450 5 954 6310 125 50 16 chr11 48388671 48389685 -73454171 + Lx2 LINE L1 5942 6990 -7 5 954 8926 75 12 19 chr11 48389685 48389728 -73454128 + L1VL4 LINE L1 2110 2137 -1422 5 954 240 347 143 20 chr11 48390034 48390237 -73453619 - L3 LINE CR1 -5 4484 4257 5 954 549 263 83 47 chr11 48390582 48390978 -73452878 - L1MB8 LINE L1 -203 5976 5575 5 954 768 262 0 59 chr11 48391235 48391438 -73452418 - B3A SINE B2 0 198 8 5 954 183 319 65 21 chr11 48391902 48391995 -73451861 - MIRc SINE MIR -159 109 13 5 954 283 290 138 112 chr11 48392252 48392395 -73451461 + MIRb SINE MIR 1 147 -121 5 954 1223 48 7 0 chr11 48392395 48392541 -73451315 + B1_Mus2 SINE Alu 1 147 0 5 954 283 290 138 112 chr11 48392541 48392657 -73451199 + MIRb SINE MIR 148 267 -1 5 954 2027 116 76 3 chr11 48393427 48393729 -73450127 + ORR1A3 LTR MaLR 1 324 -2 5 954 5299 110 70 16 chr11 48394526 48395386 -73448470 + RMER17A2 LTR ERVK 1 906 0 5 954 181 342 25 0 chr11 48396019 48396098 -73447758 - MIR SINE MIR -168 94 14 5 954 526 185 11 0 chr11 48396179 48396271 -73447585 + B3 SINE B2 35 127 -89 5 954 770 268 103 15 chr11 48396334 48396596 -73447260 + B4A SINE B4 2 286 -6 5 954 185 0 40 0 chr11 48396618 48396643 -73447213 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 954 711 159 65 0 chr11 48396931 48397069 -73446787 - B3 SINE B2 -69 147 1 5 954 3289 26 3 0 chr11 48397316 48397695 -73446161 - L1Md_A LINE L1 0 6582 6203 5 954 359 327 0 35 chr11 48398322 48398436 -73445420 - MLT1A0 LTR MaLR 0 365 256 5 954 761 251 58 39 chr11 48398551 48398758 -73445098 - ID_B1 SINE B4 -10 214 4 5 954 834 233 37 23 chr11 48399508 48399723 -73444133 - ID_B1 SINE B4 -4 220 3 5 954 1143 81 93 0 chr11 48400075 48400236 -73443620 + B2_Mm1t SINE B2 4 179 -14 5 954 864 77 0 0 chr11 48400269 48400386 -73443470 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 5 954 7870 28 1 7 chr11 48400386 48401437 -73442419 + L1Md_F2 LINE L1 5673 6582 0 5 954 5790 60 15 1 chr11 48401447 48402193 -73441663 + L1_Mus3 LINE L1 5882 6637 -1 5 954 349 313 36 6 chr11 48403007 48403174 -73440682 + MER33 DNA MER1_type 23 194 -130 5 954 582 239 0 0 chr11 48403198 48403311 -73440545 + B3A SINE B2 9 121 -77 5 954 468 51 0 0 chr11 48403318 48403377 -73440479 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 954 237 65 0 0 chr11 48403404 48403435 -73440421 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 954 182 37 0 36 chr11 48403491 48403519 -73440337 + (CATA)n Simple_repeat Simple_repeat 4 30 0 5 954 5060 194 48 14 chr11 48403544 48404580 -73439276 - Lx4B LINE L1 -2 7056 5985 5 954 8944 148 54 12 chr11 48404580 48406218 -73437638 - L1_Mur2 LINE L1 -1611 4266 2559 5 954 21 36 0 0 chr11 48406470 48406498 -73437358 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 664 243 56 6 chr11 48406694 48406872 -73436984 + MER2 DNA MER2_type 94 280 -65 5 954 576 231 30 19 chr11 48407103 48407253 -73436603 + B3A SINE B2 2 148 -47 5 954 369 0 0 0 chr11 48407253 48407294 -73436562 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 954 335 256 70 88 chr11 48407294 48407314 -73436542 + B2_Mm2 SINE B2 149 169 -26 5 954 230 333 67 62 chr11 48407881 48408276 -73435580 + L2b LINE L2 2788 3193 -194 5 954 886 234 124 8 chr11 48409705 48409964 -73433892 - B4 SINE B4 0 292 4 5 954 473 342 79 36 chr11 48410062 48410341 -73433515 - B4A SINE B4 0 292 2 5 954 181 358 12 12 chr11 48410847 48410929 -73432927 - L2a LINE L2 -5 3421 3340 5 954 1801 222 42 36 chr11 48411311 48411782 -73432074 + RMER19C LTR ERVK 138 611 0 6 954 947 233 15 10 chr11 48412150 48412354 -73431502 + B3 SINE B2 2 206 -10 6 954 221 364 0 11 chr11 48412477 48412566 -73431290 + L3 LINE CR1 4196 4283 -206 6 954 192 319 83 8 chr11 48413982 48414102 -73429754 - L3 LINE CR1 -304 4185 4057 6 954 1314 48 0 0 chr11 48414510 48414678 -73429178 + L1Md_A LINE L1 6415 6582 0 6 954 212 0 36 0 chr11 48414691 48414719 -73429137 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 954 221 287 86 12 chr11 48416943 48417024 -73426832 + MIRc SINE MIR 16 106 -162 6 954 846 284 5 19 chr11 48417068 48417283 -73426573 - ID_B1 SINE B4 -7 217 6 6 954 562 286 118 82 chr11 48417385 48417835 -73426021 - MER113 DNA MER1_type -34 487 22 6 954 21 36 0 0 chr11 48418353 48418381 -73425475 + AT_rich Low_complexity Low_complexity 1 28 0 6 954 208 200 29 0 chr11 48418383 48418453 -73425403 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 6 954 1105 275 16 40 chr11 48419063 48419385 -73424471 - ORR1E LTR MaLR -5 354 41 6 954 504 148 0 0 chr11 48419385 48419507 -73424349 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 6 954 279 0 0 0 chr11 48419509 48419540 -73424316 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 954 426 318 94 0 chr11 48420516 48420686 -73423170 - B4 SINE B4 -26 266 81 6 954 715 199 14 57 chr11 48420682 48420863 -73422993 - B3 SINE B2 0 216 38 6 954 578 298 77 18 chr11 48421328 48421550 -73422306 + Tigger5 DNA MER2_type 4 238 -2168 6 954 3152 218 71 30 chr11 48421619 48422460 -73421396 - RCHARR1 DNA MER1_type -89 885 10 6 954 542 241 40 13 chr11 48422480 48422638 -73421218 + RSINE1 SINE B4 1 163 -2 6 954 843 302 30 94 chr11 48422742 48423147 -73420709 + MTEa LTR MaLR 1 379 0 6 954 722 276 177 20 chr11 48423219 48423622 -73420234 - MLT2B1 LTR ERVL -40 527 1 6 954 270 125 0 0 chr11 48424655 48424703 -73419153 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 954 5108 99 21 0 chr11 48424927 48425643 -73418213 + L1_Mus3 LINE L1 5892 6622 -16 6 954 2317 12 0 4 chr11 48425643 48425895 -73417961 + L1Md_F2 LINE L1 5334 5585 -298 6 954 7992 44 21 0 chr11 48425896 48426858 -73416998 + L1Md_F2 LINE L1 5587 6568 -14 6 954 778 225 92 9 chr11 48426867 48427099 -73416757 - L1VL4 LINE L1 -6003 728 481 6 954 203 0 37 0 chr11 48427233 48427260 -73416596 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 954 16491 151 59 11 chr11 48427354 48429732 -73414124 - L1_Mur3 LINE L1 -1380 4500 2077 6 954 189 94 0 0 chr11 48429732 48429764 -73414092 + (TGG)n Simple_repeat Simple_repeat 1 32 0 6 954 16491 220 65 42 chr11 48429764 48431862 -73411994 - L1_Mur3 LINE L1 -3804 2076 17 6 954 1907 195 56 23 chr11 48431863 48432380 -73411476 - RLTR31A_Mm LTR ERVK 0 561 1 6 954 257 322 138 82 chr11 48432594 48432790 -73411066 - MLT1H1 LTR MaLR -241 314 108 6 954 338 316 45 32 chr11 48433032 48433186 -73410670 - MLT1L LTR MaLR -335 275 120 6 954 1582 26 5 0 chr11 48433364 48433553 -73410303 + L1Md_A LINE L1 6392 6581 -1 6 954 475 240 0 0 chr11 48434278 48434378 -73409478 - PB1D10 SINE Alu 0 117 18 6 954 272 148 0 16 chr11 48434522 48434584 -73409272 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 954 272 318 76 52 chr11 48434631 48434880 -73408976 + MIRc SINE MIR 6 260 -8 6 954 537 92 0 0 chr11 48435379 48435455 -73408401 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 954 242 163 41 0 chr11 48436462 48436511 -73407345 - MER5A1 DNA MER1_type -77 89 39 6 954 322 256 140 26 chr11 48436824 48437023 -73406833 + MIRb SINE MIR 5 236 -32 6 954 227 356 98 10 chr11 48437018 48437120 -73406736 - L2b LINE L2 0 3375 3265 6 954 2898 31 2 143 chr11 48437805 48438259 -73405597 - RLTR10 LTR ERVK 0 390 1 6 954 15295 33 31 56 chr11 48438261 48440254 -73403602 - RLTR10-int LTR ERVK -3 1984 41 6 954 2898 31 2 143 chr11 48440264 48440718 -73403138 - RLTR10 LTR ERVK 0 390 1 6 954 241 68 0 43 chr11 48441381 48441427 -73402429 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 954 324 339 49 8 chr11 48441431 48441553 -73402303 - Lx8 LINE L1 -878 6595 6469 6 954 1207 49 0 0 chr11 48441745 48441887 -73401969 + B1_Mus2 SINE Alu 1 142 -5 6 954 2753 30 9 15 chr11 48441991 48442330 -73401526 + L1Md_F3 LINE L1 6233 6569 -15 6 954 249 228 62 25 chr11 48443391 48443472 -73400384 + MIRc SINE MIR 61 144 -124 6 954 284 48 0 23 chr11 48444730 48444773 -73399083 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 954 385 271 25 56 chr11 48445631 48445791 -73398065 + MER117 DNA MER1_type 8 162 -35 6 954 692 80 0 10 chr11 48446349 48446450 -73397406 + (TCTCC)n Simple_repeat Simple_repeat 1 100 0 6 954 322 78 76 25 chr11 48446493 48446572 -73397284 + CT-rich Low_complexity Low_complexity 3 85 0 6 954 3680 33 2 0 chr11 48446593 48447021 -73396835 - L1Md_T LINE L1 -1 6581 6153 6 954 7837 177 17 7 chr11 48447021 48448426 -73395430 + Lx4B LINE L1 5640 7058 0 6 954 189 171 0 0 chr11 48448427 48448462 -73395394 + A-rich Low_complexity Low_complexity 1 35 0 6 954 1274 101 39 0 chr11 48448655 48448834 -73395022 + B2_Mm2 SINE B2 1 186 -9 6 954 387 0 0 0 chr11 48449275 48449318 -73394538 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 6 954 519 285 81 10 chr11 48449555 48449764 -73394092 - L1M3e LINE L1 -6762 268 45 6 954 261 57 0 0 chr11 48450171 48450206 -73393650 + (T)n Simple_repeat Simple_repeat 1 35 0 6 954 1205 61 0 0 chr11 48450208 48450355 -73393501 - B1_Mus1 SINE Alu -1 147 1 6 954 363 333 9 9 chr11 48451051 48451166 -73392690 + PB1D10 SINE Alu 3 117 0 6 954 304 296 0 25 chr11 48451166 48451284 -73392572 + GA-rich Low_complexity Low_complexity 1 115 0 6 954 1209 182 37 91 chr11 48451289 48451640 -73392216 - RCHARR1 DNA MER1_type -161 813 482 6 954 378 250 146 0 chr11 48452030 48452126 -73391730 + RSINE1 SINE B4 17 126 -39 6 954 2908 166 16 24 chr11 48452247 48452931 -73390925 + L1VL4 LINE L1 562 1406 -4471 6 954 1211 242 60 22 chr11 48453164 48453531 -73390325 - RCHARR1 DNA MER1_type -493 481 101 6 954 387 105 0 0 chr11 48453532 48453589 -73390267 + (CTG)n Simple_repeat Simple_repeat 3 59 0 6 954 242 310 76 54 chr11 48454510 48454602 -73389254 + B3A SINE B2 57 150 -48 6 954 1046 288 46 20 chr11 48455351 48455698 -73388158 + MLT1A1 LTR MaLR 41 396 -12 6 954 244 320 16 32 chr11 48455870 48455996 -73387860 + LTR85a LTR Gypsy? 257 380 -322 6 954 589 310 20 15 chr11 48456394 48456597 -73387259 + B4A SINE B4 1 204 -88 6 954 279 222 40 27 chr11 48456617 48456691 -73387165 + (CATA)n Simple_repeat Simple_repeat 4 78 0 6 954 1188 164 86 9 chr11 48457659 48457869 -73385987 + URR1A DNA MER1_type 1 226 0 6 954 186 43 0 0 chr11 48458053 48458076 -73385780 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 6 954 703 201 14 21 chr11 48458086 48458228 -73385628 - B1_Mur2 SINE Alu -8 141 1 6 954 1379 74 6 6 chr11 48458338 48458515 -73385341 + B2_Mm2 SINE B2 2 178 -17 6 954 352 291 51 68 chr11 48458556 48458609 -73385247 - L1MB4 LINE L1 -13 6167 6114 6 954 1788 102 206 24 chr11 48458609 48458949 -73384907 - RLTR44A LTR ERVK 0 405 4 6 954 352 291 51 68 chr11 48458949 48459131 -73384725 - L1MB4 LINE L1 -67 6113 5936 6 954 303 28 0 0 chr11 48459270 48459306 -73384550 + (TTA)n Simple_repeat Simple_repeat 2 37 0 6 954 552 267 33 7 chr11 48459324 48459475 -73384381 + Tigger7 DNA MER2_type 2331 2485 -6 6 954 1092 101 0 0 chr11 48459574 48459723 -73384133 + B1_Mur4 SINE Alu 1 149 -1 6 954 257 203 78 0 chr11 48459799 48459863 -73383993 - MTEb LTR MaLR 0 379 311 6 954 233 197 47 116 chr11 48459900 48459986 -73383870 - MTEb LTR MaLR -64 315 236 6 954 760 209 71 28 chr11 48460073 48460255 -73383601 + B3A SINE B2 3 192 -6 6 954 1185 68 0 0 chr11 48460765 48460912 -73382944 + B1_Mm SINE Alu 1 147 0 6 954 319 202 99 22 chr11 48461019 48461110 -73382746 + L1_Rod LINE L1 5588 5685 -162 6 954 21 0 0 0 chr11 48462997 48463018 -73380838 + AT_rich Low_complexity Low_complexity 1 21 0 6 954 1742 276 39 15 chr11 48463577 48464044 -73379812 + Lx6 LINE L1 6978 7455 -5 6 954 215 204 0 0 chr11 48464429 48464473 -73379383 - L2a LINE L2 -78 3348 3305 6 954 315 0 0 0 chr11 48465212 48465247 -73378609 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 954 351 0 0 0 chr11 48465247 48465285 -73378571 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 954 993 41 0 0 chr11 48465289 48465411 -73378445 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 6 954 805 273 20 78 chr11 48465411 48465740 -73378116 - MT2B LTR ERVL -58 543 145 6 954 1231 48 0 0 chr11 48465740 48465887 -73377969 + B1_Mus2 SINE Alu 1 147 0 6 954 684 317 57 85 chr11 48465887 48466029 -73377827 - MT2B LTR ERVL -389 144 5 6 954 183 224 39 39 chr11 48466115 48466166 -73377690 + MIRc SINE MIR 103 153 -115 6 954 542 341 45 35 chr11 48466268 48466581 -73377275 + Lx8 LINE L1 7151 7466 -7 6 954 296 250 0 0 chr11 48467443 48467511 -73376345 + MLT1A0 LTR MaLR 256 323 -42 6 954 758 214 7 7 chr11 48467843 48467989 -73375867 + B1_Mur4 SINE Alu 5 150 0 6 954 5570 37 0 0 chr11 48468155 48468801 -73375055 - L1Md_T LINE L1 0 6582 5937 6 954 3818 31 7 7 chr11 48469046 48469497 -73374359 + L1Md_F2 LINE L1 6130 6580 -2 6 954 551 285 139 19 chr11 48469505 48469763 -73374093 + B4A SINE B4 2 290 -2 6 954 2055 148 26 58 chr11 48469845 48470224 -73373632 + ORR1B2 LTR MaLR 1 367 0 6 954 503 56 0 14 chr11 48470259 48470331 -73373525 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 6 954 1256 259 83 0 chr11 48470363 48470699 -73373157 - MTE2a LTR MaLR -10 369 6 6 954 589 250 141 5 chr11 48470904 48471089 -73372767 + ID_B1 SINE B4 15 224 0 6 954 894 148 8 8 chr11 48471095 48471351 -73372505 + GA-rich Low_complexity Low_complexity 1 256 0 7 954 378 0 0 0 chr11 48472329 48472371 -73371485 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 954 328 255 94 0 chr11 48472372 48472478 -73371378 - PB1D10 SINE Alu -1 116 1 7 954 1244 34 0 7 chr11 48472893 48473041 -73370815 + B1_Mm SINE Alu 1 147 0 7 954 270 337 35 35 chr11 48474845 48475045 -73368811 - MIR SINE MIR -54 208 9 7 954 1157 128 0 6 chr11 48475741 48475914 -73367942 + Lx5 LINE L1 6443 6614 -436 7 954 741 193 28 0 chr11 48475997 48476142 -73367714 + B1_Mur3 SINE Alu 1 149 0 7 954 446 88 0 14 chr11 48476439 48476508 -73367348 + (TCC)n Simple_repeat Simple_repeat 3 70 0 7 954 355 218 92 0 chr11 48476937 48477024 -73366832 + PB1D10 SINE Alu 2 96 -21 7 954 9215 65 43 1 chr11 48477220 48478405 -73365451 + L1_Mm LINE L1 4351 5586 -297 7 954 8171 48 2 3 chr11 48478405 48479395 -73364461 + L1Md_F2 LINE L1 5587 6575 -7 7 954 247 324 123 14 chr11 48480368 48480506 -73363350 + L1M5 LINE L1 5558 5710 -414 7 954 2774 54 0 0 chr11 48481486 48481818 -73362038 - IAPEY3_LTR LTR ERVK 0 332 1 7 954 1266 196 10 12 chr11 48482287 48482703 -73361153 + Lx5 LINE L1 982 1394 -4483 7 954 4315 86 40 45 chr11 48482707 48482835 -73361021 - RMER17A LTR ERVK 0 751 615 7 954 3327 46 8 0 chr11 48482835 48483228 -73360628 + MTA_Mm LTR MaLR 1 396 0 7 954 8693 50 16 2 chr11 48483228 48484311 -73359545 + MTA_Mm-int LTR MaLR 1 1098 0 7 954 3327 46 8 0 chr11 48484311 48484704 -73359152 + MTA_Mm LTR MaLR 1 396 0 7 954 4315 86 40 45 chr11 48484704 48485328 -73358528 - RMER17A LTR ERVK -137 614 3 7 954 2054 144 12 34 chr11 48485328 48485739 -73358117 + Lx5 LINE L1 1393 1794 -4083 7 954 8050 141 184 12 chr11 48485736 48487313 -73356543 + Lx5 LINE L1 4112 5972 -1078 7 954 1150 50 0 0 chr11 48487313 48487452 -73356404 + B1_Mus2 SINE Alu 1 139 -8 7 954 8050 171 32 30 chr11 48487452 48488546 -73355310 + Lx5 LINE L1 5973 7050 0 7 954 345 352 112 22 chr11 48488870 48489102 -73354754 - MIRb SINE MIR -2 266 14 7 954 387 0 0 0 chr11 48489360 48489403 -73354453 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 954 295 323 0 0 chr11 48489569 48489668 -73354188 - MIR SINE MIR -26 236 138 7 954 760 241 53 0 chr11 48489787 48489974 -73353882 - B3 SINE B2 0 216 20 7 954 256 286 14 0 chr11 48490008 48490078 -73353778 - MIR SINE MIR -81 181 111 7 954 486 145 265 0 chr11 48490619 48490736 -73353120 + B1_Mus1 SINE Alu 1 148 0 7 954 357 165 21 21 chr11 48490779 48490872 -73352984 + GA-rich Low_complexity Low_complexity 1 93 0 7 954 745 242 129 32 chr11 48491085 48491333 -73352523 - B4A SINE B4 -18 274 3 7 954 464 266 96 20 chr11 48492296 48492442 -73351414 - RSINE1 SINE B4 -5 160 4 7 954 549 292 25 61 chr11 48492818 48493015 -73350841 - ORR1E LTR MaLR -167 192 3 7 954 1433 315 76 23 chr11 48493015 48493566 -73350290 - MTE-int LTR MaLR -51 1529 949 7 954 1669 176 107 94 chr11 48493605 48493886 -73349970 - Lx7 LINE L1 0 7696 7398 7 954 2260 57 11 0 chr11 48493886 48494165 -73349691 + L1_Mus1 LINE L1 6285 6566 -1 7 954 1669 176 107 94 chr11 48494165 48494416 -73349440 - Lx7 LINE L1 -299 7397 7157 7 954 236 185 0 18 chr11 48494514 48494569 -73349287 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 7 954 565 269 40 6 chr11 48494685 48494861 -73348995 - L1MA4 LINE L1 -376 5924 5743 7 954 247 282 0 23 chr11 48495007 48495094 -73348762 + C-rich Low_complexity Low_complexity 6 90 0 7 954 528 159 206 0 chr11 48496202 48496309 -73347547 + B3 SINE B2 2 130 -86 7 954 1383 82 11 0 chr11 48496428 48496612 -73347244 - B2_Mm1t SINE B2 -6 187 2 7 955 541 347 4 36 chr11 48496773 48496878 -73346978 + Tigger7 DNA MER2_type 2 100 -2391 7 955 1375 91 16 0 chr11 48496878 48497064 -73346792 + B2_Mm2 SINE B2 1 189 -6 7 955 541 347 4 36 chr11 48497064 48497206 -73346650 + Tigger7 DNA MER2_type 101 241 -2250 7 955 457 283 12 19 chr11 48497222 48497384 -73346472 - RMER15 LTR ERVL -44 531 371 7 955 263 234 91 0 chr11 48497529 48497606 -73346250 + Tigger7 DNA MER2_type 235 318 -2173 7 955 485 256 62 0 chr11 48497670 48497799 -73346057 + B1F SINE Alu 12 148 -1 7 955 376 200 49 12 chr11 48497826 48497907 -73345949 + RSINE1 SINE B4 38 121 -44 7 955 405 0 0 0 chr11 48497909 48497954 -73345902 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 955 376 217 96 0 chr11 48498080 48498195 -73345661 + Lx6 LINE L1 7308 7433 -27 7 955 1957 74 44 63 chr11 48498790 48499107 -73344749 + ORR1A2 LTR MaLR 17 327 0 7 955 1062 207 73 194 chr11 48499108 48499471 -73344385 + RMER1A Other Other 1 536 -530 7 955 1933 226 42 32 chr11 48499476 48500000 -73343856 + RMER1A Other Other 1 459 -571 7 955 2250 204 2 6 chr11 48500000 48500413 -73343443 + RMER1B Other Other 353 750 -316 1 955 846 106 134 0 chr11 48500413 48500555 -73343301 + ORR1C1 LTR MaLR 218 378 0 2 955 295 260 55 39 chr11 48501395 48501523 -73342333 - L2b LINE L2 -17 3358 3229 3 955 370 250 23 0 chr11 48501566 48501654 -73342202 + L1MC LINE L1 5533 5622 -2260 4 955 263 270 16 0 chr11 48501772 48501835 -73342021 + GA-rich Low_complexity Low_complexity 3 66 0 5 955 349 286 44 88 chr11 48501894 48502026 -73341830 + Lx8 LINE L1 7213 7348 -125 6 955 963 219 0 58 chr11 48502026 48502234 -73341622 + B3A SINE B2 2 197 -1 7 955 349 286 44 88 chr11 48502234 48502350 -73341506 + Lx8 LINE L1 7349 7450 -23 6 955 241 263 203 0 chr11 48502470 48502588 -73341268 - MER57E1 LTR ERV1 -210 162 21 8 955 360 287 20 9 chr11 48502688 48502800 -73341056 + PB1D7 SINE Alu 8 120 0 9 955 420 143 0 0 chr11 48502800 48502870 -73340986 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 955 860 178 11 0 chr11 48502862 48503036 -73340820 + GA-rich Low_complexity Low_complexity 2 177 0 1 955 742 296 15 0 chr11 48503048 48503254 -73340602 + B3 SINE B2 5 213 -3 1 955 582 293 53 20 chr11 48504197 48504467 -73339389 - MER31B LTR ERV1 0 466 75 1 955 2167 235 47 93 chr11 48504520 48505483 -73338373 + RMER17B LTR ERVK 1 786 -74 1 955 666 124 283 0 chr11 48505538 48505683 -73338173 - URR1B DNA MER1_type -37 188 3 1 955 907 240 67 0 chr11 48505856 48506064 -73337792 + ID_B1 SINE B4 2 223 -1 1 955 363 44 0 0 chr11 48506778 48506823 -73337033 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 955 1396 170 4 9 chr11 48507166 48507392 -73336464 + URR1B DNA MER1_type 1 225 0 1 955 204 40 0 0 chr11 48507513 48507538 -73336318 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 1 955 384 22 0 0 chr11 48507541 48507586 -73336270 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 955 182 263 0 0 chr11 48507866 48507904 -73335952 + MIR SINE MIR 148 185 -77 2 955 1211 109 60 0 chr11 48509140 48509324 -73334532 + B2_Mm2 SINE B2 1 195 0 2 955 443 234 96 8 chr11 48510296 48510421 -73333435 + ID_B1 SINE B4 83 218 -6 2 955 688 77 19 0 chr11 48511356 48511460 -73332396 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 955 265 231 20 71 chr11 48511492 48511590 -73332266 - RSINE1 SINE B4 0 165 73 2 955 749 262 75 144 chr11 48511592 48511994 -73331862 + MTE2a LTR MaLR 6 379 0 2 955 1313 242 67 20 chr11 48512316 48512674 -73331182 + MTEa LTR MaLR 5 379 0 2 955 839 182 201 36 chr11 48512772 48512966 -73330890 + URR1A DNA MER1_type 1 226 0 2 955 3599 57 14 2 chr11 48513554 48514044 -73329812 + RLTR1B LTR ERV1 17 512 0 2 955 617 0 14 0 chr11 48514119 48514192 -73329664 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 3 955 565 237 0 34 chr11 48514209 48514370 -73329486 + B1_Mur1 SINE Alu 1 148 -1 3 955 2678 126 7 19 chr11 48514870 48515284 -73328572 - RLTR9E LTR ERVK 0 409 1 3 955 3170 109 68 2 chr11 48515299 48515796 -73328060 + RMER4B LTR ERVK 55 584 -1 3 955 263 140 20 0 chr11 48516284 48516334 -73327522 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 955 250 374 65 0 chr11 48516344 48516467 -73327389 + MLT1F2 LTR MaLR 1 131 -429 3 955 35 0 0 0 chr11 48516467 48516502 -73327354 + AT_rich Low_complexity Low_complexity 1 35 0 3 955 1181 61 0 7 chr11 48516592 48516740 -73327116 - B1_Mm SINE Alu 0 147 1 3 955 238 322 182 77 chr11 48516758 48517044 -73326812 + MLT1F2 LTR MaLR 312 627 -27 3 955 519 157 44 11 chr11 48517044 48517134 -73326722 + Lx6 LINE L1 6224 6316 -1144 3 955 1308 167 34 26 chr11 48517136 48517400 -73326456 + MTD LTR MaLR 154 419 0 3 955 401 0 20 0 chr11 48517509 48517558 -73326298 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 955 368 238 109 0 chr11 48517649 48517796 -73326060 + L1MC5 LINE L1 7249 7411 -550 4 955 971 307 137 14 chr11 48517928 48518411 -73325445 + L1M4 LINE L1 34 575 -5967 4 955 4157 246 137 24 chr11 48519049 48519674 -73324182 + Lx8 LINE L1 5183 5908 -1565 4 955 423 0 0 0 chr11 48519674 48519721 -73324135 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 955 4157 290 87 34 chr11 48519721 48521045 -73322811 + Lx8 LINE L1 5909 7272 -201 4 955 606 212 18 0 chr11 48521248 48521418 -73322438 + CT-rich Low_complexity Low_complexity 2 174 0 4 955 236 228 35 0 chr11 48522171 48522228 -73321628 + ID4_ SINE ID 14 72 -11 4 955 2180 132 9 94 chr11 48522279 48522713 -73321143 - RMER10B LTR ERVL 0 398 2 4 955 2034 99 83 0 chr11 48523541 48523843 -73320013 + ORR1A2 LTR MaLR 1 327 0 4 955 845 228 20 15 chr11 48523871 48524067 -73319789 + B3A SINE B2 1 197 -1 4 955 618 188 8 45 chr11 48524131 48524265 -73319591 + B1_Mur4 SINE Alu 1 129 -21 5 955 782 249 50 84 chr11 48525237 48525557 -73318299 - L1M3 LINE L1 -2205 3935 3627 5 955 324 304 96 30 chr11 48525595 48525761 -73318095 + L1M1 LINE L1 5642 5818 -485 5 955 562 305 27 38 chr11 48525770 48525889 -73317967 + B3A SINE B2 1 119 -79 5 955 2218 96 15 61 chr11 48525889 48526232 -73317624 + ORR1A2 LTR MaLR 1 327 0 5 955 562 305 27 38 chr11 48526232 48526296 -73317560 + B3A SINE B2 120 181 -17 5 955 543 83 0 0 chr11 48526413 48526497 -73317359 + B1_Mus2 SINE Alu 64 147 0 5 955 253 376 14 0 chr11 48527347 48527488 -73316368 - MIR3 SINE MIR -26 182 40 5 955 532 269 26 67 chr11 48527525 48527720 -73316136 - B4 SINE B4 0 292 106 5 955 734 199 28 0 chr11 48528251 48528392 -73315464 + B1_Mur1 SINE Alu 5 149 0 5 955 318 287 75 0 chr11 48528574 48528668 -73315188 + PB1D7 SINE Alu 12 112 -8 5 955 188 111 0 27 chr11 48528672 48528709 -73315147 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 6 955 468 0 0 0 chr11 48529141 48529193 -73314663 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 955 619 277 81 9 chr11 48529294 48529516 -73314340 - MT2A LTR ERVL -104 429 192 6 955 38909 42 1 3 chr11 48529753 48536146 -73307710 - L1Md_T LINE L1 0 6585 111 6 955 1152 292 46 112 chr11 48536443 48536531 -73307325 + Zaphod DNA Tip100 6 77 -3954 6 955 580 296 16 16 chr11 48536531 48536713 -73307143 + B3A SINE B2 1 182 -16 6 955 1152 292 46 112 chr11 48536713 48537230 -73306626 + Zaphod DNA Tip100 78 571 -3460 6 955 925 171 7 0 chr11 48537931 48538077 -73305779 + B1_Mus1 SINE Alu 2 148 0 6 955 609 271 21 57 chr11 48538963 48539155 -73304701 + B3A SINE B2 9 193 -5 6 955 1069 129 0 0 chr11 48539173 48539320 -73304536 + B1_Mus2 SINE Alu 1 147 0 6 955 258 95 0 0 chr11 48539320 48539362 -73304494 + (A)n Simple_repeat Simple_repeat 1 42 0 6 955 1021 237 34 0 chr11 48539409 48539645 -73304211 + MTE2b LTR MaLR 136 379 0 7 955 248 317 24 12 chr11 48539945 48540028 -73303828 + L2a LINE L2 3320 3403 -23 7 955 183 235 0 0 chr11 48540266 48540317 -73303539 + GA-rich Low_complexity Low_complexity 1 51 0 7 955 363 210 135 39 chr11 48540517 48540621 -73303235 + Lx7 LINE L1 7590 7692 -4 7 955 1081 279 47 47 chr11 48540784 48541171 -73302685 + MLT1B LTR MaLR 4 390 0 7 955 903 260 25 0 chr11 48541558 48541762 -73302094 + B3 SINE B2 2 210 -6 7 955 1013 217 9 18 chr11 48542010 48542231 -73301625 + ID_B1 SINE B4 6 224 0 7 955 4123 36 6 4 chr11 48542970 48543468 -73300388 + L1Md_F3 LINE L1 6086 6584 0 7 955 476 243 0 0 chr11 48543487 48543590 -73300266 + PB1D10 SINE Alu 1 103 -14 7 955 664 268 37 32 chr11 48544106 48544295 -73299561 + B3A SINE B2 2 191 -7 7 955 1455 58 5 35 chr11 48544321 48544519 -73299337 - B2_Mm1t SINE B2 0 193 2 8 955 2465 283 104 7 chr11 48545102 48545959 -73297897 + Lx9 LINE L1 6600 7539 -105 8 955 1221 242 13 34 chr11 48545973 48546302 -73297554 + Lx6 LINE L1 6172 6712 -748 8 955 443 245 10 10 chr11 48546315 48546418 -73297438 + Lx6 LINE L1 7089 7191 -269 8 955 1373 54 0 12 chr11 48546407 48546575 -73297281 - L1Md_F3 LINE L1 -305 6279 6114 8 955 2709 249 55 14 chr11 48546571 48547230 -73296626 + Lx6 LINE L1 6755 7440 -20 8 955 432 0 0 0 chr11 48547323 48547371 -73296485 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 955 940 108 199 5 chr11 48547620 48547806 -73296050 - RLTR15 LTR ERVK 0 359 138 8 955 22409 123 30 6 chr11 48549136 48552511 -73291345 - MurERV4_19-int LTR ERVK -2126 3654 198 8 955 23775 91 28 3 chr11 48552511 48557891 -73285965 - L1Md_F3 LINE L1 -1 6583 952 8 955 574 62 10 30 chr11 48557891 48557991 -73285865 - L1Md_F3 LINE L1 -14 6570 6473 8 955 5129 148 19 29 chr11 48557991 48558498 -73285358 - L1Md_F3 LINE L1 -5773 951 442 8 955 1510 115 5 0 chr11 48558510 48558718 -73285138 - MurERV4_19-int LTR ERVK -5571 209 1 8 955 2439 213 37 65 chr11 48558718 48559004 -73284852 - RMER19C LTR ERVK 0 611 324 8 955 1105 95 0 0 chr11 48559004 48559152 -73284704 + B1_Mus1 SINE Alu 1 148 0 9 955 2439 213 37 65 chr11 48559152 48559494 -73284362 - RMER19C LTR ERVK -288 323 1 8 955 243 338 81 81 chr11 48559722 48559980 -73283876 + LTR79 LTR ERVL 262 519 -8 9 955 695 313 43 4 chr11 48560565 48560799 -73283057 - L1MB5 LINE L1 -9 6165 5923 9 955 245 91 45 0 chr11 48561449 48561493 -73282363 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 9 955 553 285 127 0 chr11 48561824 48561989 -73281867 + B3A SINE B2 1 186 -12 9 955 318 169 100 11 chr11 48562212 48562302 -73281554 - L1MA6 LINE L1 -1 6299 6202 9 955 949 215 19 24 chr11 48562323 48562533 -73281323 - B3 SINE B2 -5 211 3 9 955 606 309 173 33 chr11 48562571 48562872 -73280984 - MT2A LTR ERVL 0 533 191 9 955 408 195 0 0 chr11 48562927 48563004 -73280852 - MTEa LTR MaLR -302 77 1 9 955 868 319 40 25 chr11 48563004 48563444 -73280412 - L1MA6 LINE L1 -181 6119 5647 9 955 297 0 0 0 chr11 48563583 48563616 -73280240 + (A)n Simple_repeat Simple_repeat 1 33 0 9 955 822 236 39 18 chr11 48563823 48564022 -73279834 + B3A SINE B2 9 215 -1 1 955 472 189 410 7 chr11 48564055 48564205 -73279651 + B3 SINE B2 1 210 -6 1 955 7096 34 0 21 chr11 48564270 48565110 -73278746 + RLTR13B2 LTR ERVK 1 822 0 1 955 272 329 0 12 chr11 48567598 48567684 -73276172 + MIRc SINE MIR 34 118 -150 1 955 1033 127 0 0 chr11 48567807 48567964 -73275892 + URR1A DNA MER1_type 67 223 -3 1 955 1203 68 0 7 chr11 48567986 48568134 -73275722 + B1_Mus2 SINE Alu 1 147 0 1 955 1067 109 6 0 chr11 48568159 48568324 -73275532 + (GAGAA)n Simple_repeat Simple_repeat 4 169 0 1 955 237 236 181 0 chr11 48568327 48568399 -73275457 - MT2A LTR ERVL -30 503 419 1 955 25 51 0 0 chr11 48568775 48568814 -73275042 + AT_rich Low_complexity Low_complexity 1 39 0 1 955 751 110 9 0 chr11 48568906 48569015 -73274841 + B2_Mm2 SINE B2 82 191 -4 1 955 6485 56 13 1 chr11 48569016 48569837 -73274019 + L1_Mus3 LINE L1 5808 6638 0 1 955 220 227 233 22 chr11 48571140 48571169 -73272687 + PB1D7 SINE Alu 1 109 -11 1 955 371 164 16 0 chr11 48571169 48571230 -73272626 + ID_B1 SINE B4 152 213 -11 1 955 189 0 0 0 chr11 48571238 48571259 -73272597 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1 955 27 0 0 0 chr11 48571259 48571286 -73272570 + AT_rich Low_complexity Low_complexity 1 27 0 1 955 726 177 92 0 chr11 48571287 48571417 -73272439 + B1_Mur4 SINE Alu 2 143 -7 1 955 418 170 21 0 chr11 48571429 48571523 -73272333 + GA-rich Low_complexity Low_complexity 2 97 0 1 955 3844 49 12 62 chr11 48571586 48572105 -73271751 - MT2_Mm LTR ERVL 0 493 1 1 955 576 289 6 31 chr11 48572240 48572401 -73271455 + RSINE1 SINE B4 9 165 0 1 955 424 340 96 57 chr11 48573096 48573514 -73270342 + L2b LINE L2 2941 3374 -1 1 955 408 40 0 0 chr11 48574458 48574508 -73269348 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 955 671 143 107 0 chr11 48574513 48574625 -73269231 + B1_Mus2 SINE Alu 1 124 -23 1 955 672 124 0 0 chr11 48574629 48574734 -73269122 + (GGA)n Simple_repeat Simple_repeat 3 107 0 1 955 264 30 0 0 chr11 48575135 48575168 -73268688 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 955 622 266 11 17 chr11 48575222 48575398 -73268458 + L1MC4 LINE L1 7167 7341 -701 1 955 464 286 53 10 chr11 48575441 48575649 -73268207 + L1MC4 LINE L1 7454 7670 -372 1 955 703 339 0 11 chr11 48575728 48575916 -73267940 + ORR1E LTR MaLR 1 186 -173 1 955 216 270 79 0 chr11 48576052 48576115 -73267741 + ID4 SINE ID 8 75 -8 1 955 387 342 20 31 chr11 48576357 48576553 -73267303 + L1MB4 LINE L1 5382 5575 -608 1 955 293 159 0 16 chr11 48576584 48576648 -73267208 + GA-rich Low_complexity Low_complexity 4 66 0 1 955 1039 277 106 57 chr11 48576667 48576970 -73266886 + L1MB4 LINE L1 5609 5905 -275 1 955 557 220 20 34 chr11 48576970 48577116 -73266740 + B1_Mur2 SINE Alu 5 148 -1 1 955 1039 277 106 57 chr11 48577116 48577352 -73266504 + L1MB4 LINE L1 5906 6174 -6 1 955 220 283 44 132 chr11 48577373 48577487 -73266369 + MIR SINE MIR 32 135 -73 1 955 198 0 0 0 chr11 48577487 48577509 -73266347 + (T)n Simple_repeat Simple_repeat 1 22 0 1 955 1280 41 0 0 chr11 48577511 48577658 -73266198 - B1_Mus1 SINE Alu 0 148 2 1 955 686 168 240 34 chr11 48577661 48577840 -73266016 - B3 SINE B2 0 216 1 1 955 900 242 65 36 chr11 48579659 48579937 -73263919 - B4 SINE B4 -6 286 1 1 955 374 304 44 0 chr11 48580127 48580262 -73263594 + RMER1B Other Other 591 731 -335 1 955 250 254 90 150 chr11 48580309 48580432 -73263424 + RMER1C Other Other 140 254 -1088 1 955 252 0 0 0 chr11 48580432 48580460 -73263396 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 955 250 254 90 150 chr11 48580460 48580503 -73263353 + RMER1C Other Other 255 296 -1046 1 955 3189 221 79 49 chr11 48580505 48581374 -73262482 + RMER1C Other Other 93 1342 0 1 955 300 235 24 12 chr11 48581515 48581597 -73262259 + MER90 LTR ERV1 12 94 -481 1 955 1323 94 11 0 chr11 48581597 48581777 -73262079 + B2_Mm1t SINE B2 1 182 -11 1 955 335 111 28 11 chr11 48581821 48581927 -73261929 + B2_Mm2 SINE B2 47 190 -5 1 955 343 292 80 0 chr11 48581979 48582092 -73261764 + B1F1 SINE Alu 9 130 -19 1 955 407 19 19 0 chr11 48582105 48582157 -73261699 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1 955 260 302 52 10 chr11 48582189 48582285 -73261571 + MER90 LTR ERV1 197 296 -318 1 955 694 205 8 0 chr11 48582285 48582407 -73261449 + RSINE1 SINE B4 3 125 -40 1 955 376 241 40 45 chr11 48582324 48582571 -73261285 + RMER17D LTR ERVK 198 443 -446 1 955 342 143 0 0 chr11 48582571 48582634 -73261222 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 955 990 218 36 18 chr11 48583305 48583525 -73260331 + ID_B1 SINE B4 1 224 0 1 955 1242 48 0 0 chr11 48583556 48583702 -73260154 + B1_Mm SINE Alu 1 146 -1 1 955 1375 80 16 21 chr11 48583751 48583942 -73259914 + B2_Mm2 SINE B2 3 192 -3 1 955 5656 103 15 36 chr11 48584300 48585208 -73258648 - RMER17D LTR ERVK 0 889 1 1 955 851 223 2 27 chr11 48585310 48585510 -73258346 - B3A SINE B2 -10 185 2 1 955 208 234 112 38 chr11 48585640 48585720 -73258136 + L2c LINE L2 3301 3386 -1 1 955 527 233 67 8 chr11 48585784 48585918 -73257938 + B1_Mur2 SINE Alu 6 147 -2 1 955 537 253 91 74 chr11 48586096 48586446 -73257410 - RMER17C LTR ERVK -54 356 1 1 955 183 42 0 0 chr11 48586710 48586734 -73257122 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 955 1236 82 0 0 chr11 48586734 48586903 -73256953 + (CA)n Simple_repeat Simple_repeat 1 170 0 1 955 1658 31 11 0 chr11 48587464 48587655 -73256201 + B2_Mm1a SINE B2 1 193 0 1 955 180 111 0 0 chr11 48587712 48587739 -73256117 + (A)n Simple_repeat Simple_repeat 1 27 0 1 955 308 301 118 89 chr11 48587835 48588072 -73255784 + MIR SINE MIR 17 260 -2 1 955 257 196 89 0 chr11 48588475 48588531 -73255325 + B3A SINE B2 102 162 -36 1 955 464 59 15 0 chr11 48588533 48588601 -73255255 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 955 283 240 75 94 chr11 48588617 48588723 -73255133 + RSINE1 SINE B4 43 146 -19 1 955 210 91 0 0 chr11 48588728 48588761 -73255095 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 955 216 86 0 0 chr11 48589302 48589337 -73254519 + (T)n Simple_repeat Simple_repeat 1 35 0 1 955 3707 214 146 31 chr11 48589363 48590291 -73253565 - RMER1B Other Other -2 1064 31 1 955 1136 45 0 0 chr11 48590589 48590723 -73253133 + B1_Mus2 SINE Alu 1 134 -13 1 955 305 302 86 86 chr11 48590905 48591057 -73252799 + RSINE1 SINE B4 2 153 -12 1 955 581 266 0 8 chr11 48591078 48591203 -73252653 + B3 SINE B2 1 124 -92 1 955 1304 70 53 0 chr11 48591225 48591396 -73252460 + B2_Mm2 SINE B2 2 181 -14 1 955 487 87 336 28 chr11 48591462 48591569 -73252287 + B2_Mm2 SINE B2 47 186 -9 1 955 1417 243 62 8 chr11 48591752 48591959 -73251897 + MTD LTR MaLR 1 209 -210 1 955 831 144 21 7 chr11 48591959 48592099 -73251757 + B1_Mur4 SINE Alu 1 142 -8 1 955 1417 243 62 8 chr11 48592099 48592260 -73251596 + MTD LTR MaLR 210 388 -31 1 955 198 0 0 0 chr11 48592260 48592282 -73251574 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 955 2158 197 92 36 chr11 48593103 48593624 -73250232 + Lx5 LINE L1 6501 7050 0 1 955 486 214 46 46 chr11 48593653 48593761 -73250095 + B1_Mus1 SINE Alu 2 109 -39 1 955 791 216 0 18 chr11 48593759 48593924 -73249932 + B3A SINE B2 37 198 0 1 955 1015 92 43 0 chr11 48593948 48594089 -73249767 - B1_Mus2 SINE Alu 0 147 1 1 955 556 320 40 0 chr11 48594117 48594267 -73249589 + RSINE1 SINE B4 4 159 -6 1 955 2052 167 101 52 chr11 48594403 48594869 -73248987 - RMER1B Other Other -154 912 424 1 955 755 191 15 0 chr11 48594869 48595000 -73248856 + B1_Mur2 SINE Alu 5 137 -12 1 955 189 0 0 0 chr11 48595000 48595021 -73248835 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1 955 1234 138 16 0 chr11 48595025 48595214 -73248642 + B2_Mm2 SINE B2 2 193 -2 1 955 22 35 0 0 chr11 48595393 48595422 -73248434 + AT_rich Low_complexity Low_complexity 1 29 0 1 955 704 256 12 6 chr11 48595567 48595728 -73248128 + RSINE1 SINE B4 4 165 0 1 955 859 272 15 0 chr11 48595832 48596034 -73247822 + B3 SINE B2 3 207 -9 1 955 30 0 0 0 chr11 48596049 48596079 -73247777 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 382 161 0 0 chr11 48596087 48596143 -73247713 + U4 snRNA snRNA 1 56 -89 1 955 391 132 324 45 chr11 48596199 48596310 -73247546 - B2_Mm1t SINE B2 -4 189 48 1 955 611 101 56 0 chr11 48596323 48596412 -73247444 - B2_Mm1t SINE B2 -14 179 86 1 955 4066 110 104 15 chr11 48596412 48597149 -73246707 + RMER17B LTR ERVK 1 906 0 1 955 645 81 11 0 chr11 48597149 48597236 -73246620 - B2_Mm1t SINE B2 -102 91 4 1 955 24 32 0 0 chr11 48597860 48597891 -73245965 + AT_rich Low_complexity Low_complexity 1 31 0 1 955 427 285 49 2 chr11 48597891 48598004 -73245852 + B3A SINE B2 48 163 -53 1 955 351 0 0 0 chr11 48598004 48598043 -73245813 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 955 592 261 46 24 chr11 48598061 48598246 -73245610 + B3A SINE B2 1 185 -8 1 955 22 35 0 0 chr11 48598267 48598296 -73245560 + AT_rich Low_complexity Low_complexity 1 29 0 1 955 654 186 144 44 chr11 48598330 48598388 -73245468 - ORR1B1 LTR MaLR -7 387 324 1 955 1485 53 21 5 chr11 48598388 48598579 -73245277 + B2_Mm2 SINE B2 1 194 -1 1 955 654 212 137 64 chr11 48598579 48598823 -73245033 - ORR1B1 LTR MaLR -71 323 6 1 955 538 219 67 8 chr11 48598865 48598985 -73244871 + B1_Mur1 SINE Alu 23 149 0 1 955 3761 157 121 25 chr11 48598993 48599347 -73244509 + RMER1A Other Other 280 681 -349 1 955 3558 45 28 5 chr11 48599347 48599773 -73244083 - RLTR10C LTR ERVK 0 436 1 2 955 3761 157 121 25 chr11 48599773 48599980 -73243876 + RMER1A Other Other 682 893 -137 1 955 237 33 0 0 chr11 48599980 48600010 -73243846 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 955 315 0 0 0 chr11 48600010 48600044 -73243812 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 955 3761 157 121 25 chr11 48600044 48600165 -73243691 + RMER1A Other Other 894 1029 -1 1 955 1195 48 0 0 chr11 48600269 48600415 -73243441 + B1_Mus2 SINE Alu 2 147 0 2 955 243 0 0 0 chr11 48600415 48600442 -73243414 + (A)n Simple_repeat Simple_repeat 1 27 0 2 955 268 309 71 2 chr11 48600453 48600565 -73243291 + MIRb SINE MIR 7 126 -136 2 955 573 181 19 9 chr11 48600596 48600702 -73243154 + PB1D9 SINE Alu 1 107 -13 2 955 312 242 18 92 chr11 48600789 48600898 -73242958 + PB1D9 SINE Alu 2 102 -18 2 955 437 309 79 0 chr11 48600965 48601091 -73242765 - RSINE1 SINE B4 -26 139 4 2 955 298 182 15 0 chr11 48601092 48601158 -73242698 + RCHARR1 DNA MER1_type 838 904 -70 2 955 1223 214 37 118 chr11 48601161 48601200 -73242656 + ORR1E LTR MaLR 4 42 -317 2 955 1180 55 0 14 chr11 48601200 48601347 -73242509 - B1_Mus2 SINE Alu -1 146 2 2 955 1223 214 37 118 chr11 48601347 48601562 -73242294 + ORR1E LTR MaLR 43 223 -136 2 955 252 0 0 0 chr11 48601562 48601590 -73242266 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 955 1223 214 37 118 chr11 48601590 48601716 -73242140 + ORR1E LTR MaLR 224 354 -5 2 955 1384 102 23 0 chr11 48601788 48602003 -73241853 - Lx2A LINE L1 -3 7005 6786 2 955 422 265 8 71 chr11 48602073 48602199 -73241657 + RSINE1 SINE B4 4 121 -44 2 955 203 284 15 15 chr11 48602200 48602268 -73241588 + GA-rich Low_complexity Low_complexity 1 68 0 2 955 215 100 0 48 chr11 48602566 48602583 -73241273 + (A)n Simple_repeat Simple_repeat 1 17 0 2 955 1022 82 67 0 chr11 48602583 48602718 -73241138 + B1_Mus2 SINE Alu 4 147 0 2 955 215 100 0 48 chr11 48602718 48602742 -73241114 + (A)n Simple_repeat Simple_repeat 1 23 0 2 955 486 0 0 0 chr11 48603654 48603708 -73240148 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 955 295 274 153 31 chr11 48603754 48603852 -73240004 + B4A SINE B4 101 210 -82 2 955 230 170 60 60 chr11 48603982 48604032 -73239824 - MTE-int LTR MaLR -175 1405 1356 2 955 847 37 18 9 chr11 48604239 48604349 -73239507 + B1_Mus1 SINE Alu 24 134 -14 2 955 972 0 0 0 chr11 48604351 48604459 -73239397 + (GGAAA)n Simple_repeat Simple_repeat 3 110 0 2 955 242 260 142 19 chr11 48605003 48605109 -73238747 - RMER17B LTR ERVK -175 783 665 2 955 230 268 0 18 chr11 48605152 48605209 -73238647 - B1F2 SINE Alu -89 60 5 2 955 458 261 56 42 chr11 48605264 48605408 -73238448 + B1_Mur1 SINE Alu 2 147 -2 2 955 1255 34 0 7 chr11 48605418 48605566 -73238290 - B1_Mus1 SINE Alu -1 147 1 2 955 237 208 0 0 chr11 48605908 48605980 -73237876 + T-rich Low_complexity Low_complexity 1 72 0 2 955 847 236 55 35 chr11 48606151 48606353 -73237503 + B3 SINE B2 6 211 -5 2 955 495 279 29 7 chr11 48606409 48606546 -73237310 - B1F SINE Alu 0 149 10 2 955 297 0 0 0 chr11 48606665 48606698 -73237158 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 955 432 224 0 0 chr11 48606876 48607038 -73236818 + (TG)n Simple_repeat Simple_repeat 1 162 0 2 955 414 329 30 92 chr11 48607048 48607170 -73236686 - B3A SINE B2 -16 182 57 2 955 1466 53 31 11 chr11 48607170 48607361 -73236495 + B2_Mm2 SINE B2 1 195 0 2 955 414 329 30 92 chr11 48607361 48607402 -73236454 - B3A SINE B2 -142 56 29 2 955 239 0 32 0 chr11 48607461 48607492 -73236364 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2 955 894 280 5 5 chr11 48607492 48607693 -73236163 - ID_B1 SINE B4 -13 211 11 2 955 4282 31 0 0 chr11 48607917 48608399 -73235457 + LTRIS_Mm LTR ERV1 1 482 0 2 955 287 250 0 40 chr11 48608729 48608804 -73235052 - MER20 DNA MER1_type -119 100 29 2 955 640 225 68 12 chr11 48608833 48608995 -73234861 + B3 SINE B2 30 200 -16 2 955 242 224 17 33 chr11 48609342 48609402 -73234454 + B1_Mur4 SINE Alu 2 60 -90 2 955 576 88 0 50 chr11 48609402 48609522 -73234334 + (GGA)n Simple_repeat Simple_repeat 1 114 0 2 955 270 0 0 0 chr11 48609755 48609785 -73234071 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 955 232 151 0 70 chr11 48610223 48610280 -73233576 + T-rich Low_complexity Low_complexity 1 53 0 2 955 459 0 0 0 chr11 48610785 48610836 -73233020 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 955 249 142 0 95 chr11 48611035 48611097 -73232759 + PB1D9 SINE Alu 74 148 -1 2 955 313 291 0 0 chr11 48611173 48611252 -73232604 + ID2 SINE ID 5 83 0 2 955 430 309 23 31 chr11 48611986 48612116 -73231740 - B1F2 SINE Alu -18 131 3 2 955 697 210 72 0 chr11 48612200 48612338 -73231518 + B1_Mus1 SINE Alu 1 148 0 2 955 261 95 197 45 chr11 48612397 48612463 -73231393 + B1_Mur4 SINE Alu 75 150 0 2 955 192 125 0 0 chr11 48612465 48612497 -73231359 + (A)n Simple_repeat Simple_repeat 1 32 0 2 955 343 271 36 27 chr11 48612509 48612619 -73231237 + PB1D10 SINE Alu 5 115 -2 2 955 627 45 16 0 chr11 48612632 48612724 -73231132 + B1_Mus2 SINE Alu 55 149 0 2 955 324 0 0 0 chr11 48612906 48612942 -73230914 + (A)n Simple_repeat Simple_repeat 1 36 0 2 955 549 284 52 0 chr11 48613303 48613437 -73230419 + ID_B1 SINE B4 84 224 0 2 955 433 281 126 0 chr11 48614812 48614947 -73228909 + B3 SINE B2 57 208 -8 2 955 1122 95 0 12 chr11 48616199 48616359 -73227497 - B2_Mm2 SINE B2 -37 158 1 2 955 337 181 54 27 chr11 48618258 48618332 -73225524 - B1_Mur4 SINE Alu -59 91 16 2 955 1243 48 0 0 chr11 48618333 48618480 -73225376 + B1_Mus2 SINE Alu 1 147 0 2 955 255 211 57 19 chr11 48618705 48618758 -73225098 - B1F SINE Alu -85 64 10 2 955 822 103 26 0 chr11 48622220 48622337 -73221519 - PB1D9 SINE Alu 0 120 1 2 955 853 200 27 35 chr11 48622782 48622992 -73220864 + B3 SINE B2 5 212 -4 2 955 622 239 0 130 chr11 48623396 48623445 -73220411 - RSINE1 SINE B4 -28 137 100 2 955 1217 35 7 0 chr11 48623445 48623588 -73220268 + B1_Mus1 SINE Alu 5 148 0 2 955 622 239 0 130 chr11 48623588 48623692 -73220164 - RSINE1 SINE B4 -66 99 4 2 955 443 198 79 26 chr11 48623695 48623809 -73220047 - PB1D9 SINE Alu 0 120 1 2 955 228 314 14 0 chr11 48623876 48623946 -73219910 + L2b LINE L2 3296 3366 -9 2 955 308 368 9 9 chr11 48623992 48624107 -73219749 + PB1D7 SINE Alu 6 120 0 2 955 235 241 165 0 chr11 48624187 48624266 -73219590 - MER58D DNA MER1_type -1 385 294 2 955 787 190 84 27 chr11 48624406 48624662 -73219194 + ORR1D1 LTR MaLR 1 374 0 2 955 625 192 16 32 chr11 48624684 48624808 -73219048 - B1_Mur2 SINE Alu -7 142 21 2 955 377 265 38 146 chr11 48624744 48624956 -73218900 + MT2B LTR ERVL 90 278 -323 2 955 795 159 14 35 chr11 48624837 48624980 -73218876 + B1_Mur3 SINE Alu 9 148 -1 2 955 1256 55 0 0 chr11 48626319 48626465 -73217391 + B1_Mus2 SINE Alu 1 146 -1 2 955 432 133 30 109 chr11 48626517 48626618 -73217238 + ORR1D1 LTR MaLR 74 166 -208 2 955 374 248 43 26 chr11 48626889 48627005 -73216851 - ID_B1 SINE B4 -1 223 106 2 955 183 159 136 0 chr11 48627318 48627362 -73216494 + MIRb SINE MIR 124 173 -95 2 956 537 256 44 0 chr11 48627742 48627879 -73215977 - B1_Mur1 SINE Alu -3 146 4 2 956 240 282 76 13 chr11 48627941 48628020 -73215836 + RSINE1 SINE B4 48 131 -34 2 956 380 205 26 0 chr11 48628045 48628123 -73215733 + B1_Mur2 SINE Alu 63 142 -7 2 956 534 226 31 93 chr11 48628144 48628305 -73215551 - ID_B1 SINE B4 0 224 74 2 956 186 192 0 0 chr11 48629665 48629717 -73214139 + CT-rich Low_complexity Low_complexity 1 52 0 2 956 249 33 0 0 chr11 48629756 48629786 -73214070 + (TCC)n Simple_repeat Simple_repeat 1 30 0 2 956 213 159 0 0 chr11 48629931 48629975 -73213881 + CT-rich Low_complexity Low_complexity 1 44 0 2 956 357 259 46 118 chr11 48631075 48631228 -73212628 + PB1D7 SINE Alu 10 147 0 2 956 224 266 127 0 chr11 48631462 48631541 -73212315 + MIR SINE MIR 148 236 -26 2 956 688 0 0 0 chr11 48632043 48632116 -73211740 + tRNA-Val-GTG tRNA tRNA 1 73 -3 2 956 3898 117 113 34 chr11 48632658 48633359 -73210497 + RMER6A LTR ERVK 1 756 0 2 956 2553 130 11 45 chr11 48633848 48634291 -73209565 - RMER6A LTR ERVK 0 756 329 2 956 389 74 0 18 chr11 48634291 48634346 -73209510 - RMER6A LTR ERVK -647 109 56 2 956 210 299 23 125 chr11 48634512 48634538 -73209318 + B4 SINE B4 8 85 -206 2 956 301 262 16 0 chr11 48634538 48634599 -73209257 + ID4_ SINE ID 22 83 0 2 956 410 50 33 0 chr11 48634609 48634669 -73209187 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2 956 1271 27 0 0 chr11 48635011 48635157 -73208699 + B1_Mm SINE Alu 2 147 0 2 956 444 248 165 0 chr11 48635424 48635545 -73208311 - B1_Mur2 SINE Alu -8 141 1 2 956 203 0 0 36 chr11 48635563 48635591 -73208265 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2 956 384 77 0 0 chr11 48635864 48635916 -73207940 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2 956 692 143 79 0 chr11 48635929 48636055 -73207801 + B1_Mur4 SINE Alu 15 150 0 2 956 562 55 0 14 chr11 48637229 48637303 -73206553 + tRNA-Val-GTY tRNA tRNA 1 73 -3 2 956 216 86 0 0 chr11 48637732 48637767 -73206089 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 956 236 162 13 63 chr11 48639856 48639935 -73203921 + (CCGGG)n Simple_repeat Simple_repeat 2 76 0 2 956 288 0 0 0 chr11 48640038 48640070 -73203786 + (CCG)n Simple_repeat Simple_repeat 3 34 0 2 956 30 93 0 0 chr11 48640141 48640227 -73203629 + GC_rich Low_complexity Low_complexity 1 86 0 3 956 180 152 0 0 chr11 48640254 48640287 -73203569 + T-rich Low_complexity Low_complexity 1 33 0 3 956 221 291 138 12 chr11 48640373 48640453 -73203403 + PB1D10 SINE Alu 1 90 -27 3 956 945 197 17 30 chr11 48640455 48640685 -73203171 + Lx5 LINE L1 6824 7050 0 3 956 326 278 34 77 chr11 48640909 48641026 -73202830 + MT2B LTR ERVL 153 264 -337 3 956 684 172 35 50 chr11 48640930 48641071 -73202785 + B1_Mur3 SINE Alu 11 149 0 3 956 498 262 173 11 chr11 48641339 48641524 -73202332 - B3 SINE B2 0 216 2 3 956 2340 67 249 8 chr11 48641570 48641960 -73201896 - MURVY-LTR LTR ERV1 -24 495 12 3 956 884 79 8 0 chr11 48642129 48642255 -73201601 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 3 956 1718 98 202 17 chr11 48642285 48642587 -73201269 + MTB LTR MaLR 1 358 -42 3 956 822 112 80 0 chr11 48642604 48642729 -73201127 - B1_Mus1 SINE Alu -6 142 8 3 956 626 135 29 0 chr11 48642767 48642871 -73200985 + B1_Mur2 SINE Alu 2 108 -41 3 956 522 83 0 0 chr11 48642879 48642951 -73200905 + (GGA)n Simple_repeat Simple_repeat 3 74 0 3 956 270 307 85 16 chr11 48643304 48643433 -73200423 - L2a LINE L2 -49 3377 3240 3 956 182 37 0 36 chr11 48644789 48644817 -73199039 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 956 1123 44 22 0 chr11 48644819 48644954 -73198902 - B1_Mus1 SINE Alu -9 139 2 3 956 555 254 113 21 chr11 48644977 48645118 -73198738 - B3 SINE B2 0 216 63 3 956 507 259 72 29 chr11 48645128 48645267 -73198589 - B1_Mur3 SINE Alu 0 149 5 3 956 249 340 47 70 chr11 48645188 48645288 -73198568 - B4 SINE B4 -125 167 68 3 956 2811 35 12 0 chr11 48645288 48645628 -73198228 - L1Md_A LINE L1 0 6582 6239 3 956 256 237 0 92 chr11 48645633 48645698 -73198158 - B3A SINE B2 -139 59 1 3 956 450 149 0 0 chr11 48645928 48646015 -73197841 + (T)n Simple_repeat Simple_repeat 1 87 0 3 956 1175 68 0 13 chr11 48646016 48646165 -73197691 - B1_Mus1 SINE Alu -1 147 1 3 956 424 224 21 43 chr11 48646209 48646349 -73197507 + L1MB4 LINE L1 5721 5857 -323 3 956 228 174 109 0 chr11 48646408 48646454 -73197402 + ID_B1 SINE B4 165 215 -9 3 956 218 226 68 162 chr11 48646421 48646495 -73197361 + B1F SINE Alu 74 140 -9 3 956 255 159 183 96 chr11 48646701 48646805 -73197051 + MT2B LTR ERVL 152 264 -337 3 956 566 98 0 12 chr11 48646741 48646824 -73197032 + B1_Mus2 SINE Alu 50 131 -16 3 956 279 0 0 0 chr11 48646832 48646863 -73196993 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 956 601 118 9 9 chr11 48646884 48646995 -73196861 + (GGA)n Simple_repeat Simple_repeat 3 113 0 3 956 283 228 63 0 chr11 48647009 48647088 -73196768 + L1MB4 LINE L1 6058 6141 -42 3 956 262 266 84 0 chr11 48647091 48647163 -73196693 + ID4_ SINE ID 3 84 -68 3 956 681 0 0 0 chr11 48647383 48647457 -73196399 - tRNA-Lys-AAG tRNA tRNA -2 74 1 3 956 615 56 0 0 chr11 48647930 48648002 -73195854 - tRNA-Ala-GCG tRNA tRNA -3 72 1 3 956 761 19 19 0 chr11 48648103 48648209 -73195647 + L1Md_T LINE L1 6475 6582 0 3 956 415 218 201 8 chr11 48648565 48648699 -73195157 - B3 SINE B2 0 216 57 3 956 2148 148 23 39 chr11 48648757 48649143 -73194713 - RLTR14 LTR ERV1 0 382 3 3 956 485 215 79 65 chr11 48649542 48649681 -73194175 - ID_B1 SINE B4 0 224 84 3 956 252 282 25 25 chr11 48649913 48649993 -73193863 - L2 LINE L2 -508 2911 2832 3 956 21 0 0 0 chr11 48650042 48650063 -73193793 + AT_rich Low_complexity Low_complexity 1 21 0 3 956 495 0 0 0 chr11 48652478 48652533 -73191323 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 956 725 156 31 8 chr11 48652856 48652985 -73190871 + B1_Mur4 SINE Alu 2 133 -17 3 956 434 318 19 51 chr11 48653268 48653424 -73190432 - RSINE1 SINE B4 -12 153 3 3 956 864 184 7 7 chr11 48653506 48653654 -73190202 - B1_Mur2 SINE Alu 0 149 2 3 956 291 262 22 60 chr11 48654189 48654323 -73189533 - RLTR13D3 LTR ERVK -42 1072 944 3 956 23 33 0 0 chr11 48654762 48654792 -73189064 + AT_rich Low_complexity Low_complexity 1 30 0 3 956 408 317 24 0 chr11 48655065 48655188 -73188668 + MER20 DNA MER1_type 90 215 -4 3 956 389 108 289 0 chr11 48655280 48655363 -73188493 + B1_Mur4 SINE Alu 44 150 0 3 956 620 246 8 0 chr11 48655386 48655508 -73188348 + B1_Mur2 SINE Alu 1 123 -26 3 956 238 277 7 44 chr11 48655519 48655612 -73188244 - MLT1A0 LTR MaLR -53 337 249 3 956 349 200 0 121 chr11 48655863 48655954 -73187902 - RLTR33 LTR ERVK -152 526 447 3 956 198 0 0 0 chr11 48656016 48656038 -73187818 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 3 956 481 234 81 10 chr11 48656078 48656215 -73187641 - B1F SINE Alu -1 146 3 3 956 760 163 20 41 chr11 48658018 48658165 -73185691 + B1_Mus2 SINE Alu 3 146 -1 3 956 580 234 42 21 chr11 48658189 48658333 -73185523 + B1_Mur3 SINE Alu 3 149 0 3 956 456 51 0 0 chr11 48658438 48658497 -73185359 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 3 956 943 85 47 0 chr11 48658497 48658626 -73185230 - B1_Mus1 SINE Alu -9 139 5 3 956 284 196 0 18 chr11 48659468 48659525 -73184331 + B3 SINE B2 1 56 -160 3 956 2334 179 42 19 chr11 48659530 48660007 -73183849 - RLTR28 LTR ERVL 0 524 37 3 956 523 160 148 19 chr11 48660021 48660129 -73183727 + B3 SINE B2 95 216 0 3 956 1469 50 39 0 chr11 48660137 48660318 -73183538 + B2_Mm2 SINE B2 1 188 -7 3 956 685 184 69 62 chr11 48660329 48660474 -73183382 + B1_Mur2 SINE Alu 3 148 -1 3 956 520 267 36 22 chr11 48660588 48660726 -73183130 + ID_B1 SINE B4 84 223 -1 3 956 245 359 48 27 chr11 48661307 48661453 -73182403 - ORR1E LTR MaLR -210 149 1 3 956 210 179 26 0 chr11 48662826 48662865 -73180991 + GA-rich Low_complexity Low_complexity 3 42 0 3 956 828 63 36 0 chr11 48664140 48664251 -73179605 - B1_Mus1 SINE Alu -16 132 18 3 956 278 196 18 0 chr11 48664910 48664966 -73178890 + B4A SINE B4 32 88 -204 3 956 401 248 33 157 chr11 48664927 48665080 -73178776 + B3A SINE B2 49 182 -16 3 956 280 0 50 0 chr11 48665092 48665132 -73178724 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 3 956 353 87 0 0 chr11 48665137 48665183 -73178673 - RMER5 LTR ERV1 -12 522 477 3 956 697 191 73 7 chr11 48665776 48665913 -73177943 - B1F2 SINE Alu -3 146 1 3 956 670 0 0 0 chr11 48667120 48667193 -73176663 + tRNA-Thr-ACA tRNA tRNA 1 73 -3 3 956 703 293 11 63 chr11 48667860 48667966 -73175890 - RMER15 LTR ERVL -11 564 468 3 956 2250 139 65 20 chr11 48667966 48668369 -73175487 + MTC LTR MaLR 1 421 0 3 956 703 293 11 63 chr11 48668369 48668546 -73175310 - RMER15 LTR ERVL -108 467 296 3 956 639 0 0 0 chr11 48669781 48669853 -73174003 + tRNA-Pro-CCA tRNA tRNA 1 72 -3 3 956 681 0 0 0 chr11 48670138 48670211 -73173645 + tRNA-Val-GTY tRNA tRNA 1 73 -3 3 956 722 0 0 0 chr11 48670475 48670557 -73173299 - tRNA-Leu-CTY tRNA tRNA -3 82 1 3 956 261 0 0 0 chr11 48671123 48671152 -73172704 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 956 437 50 17 0 chr11 48671185 48671245 -73172611 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 956 672 96 0 0 chr11 48671245 48671349 -73172507 - B1_Mus2 SINE Alu -3 144 41 3 956 228 211 57 161 chr11 48671248 48671372 -73172484 - B4A SINE B4 -71 221 111 3 956 733 123 77 64 chr11 48672026 48672182 -73171674 - URR1B DNA MER1_type 0 225 68 3 956 377 297 10 10 chr11 48672484 48672586 -73171270 + PB1 SINE Alu 6 107 -20 3 956 213 94 0 0 chr11 48672601 48672633 -73171223 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 3 956 8710 118 30 135 chr11 48673543 48675292 -73168564 - RLTR22_Mur LTR ERVK 0 1848 313 3 956 1150 81 0 0 chr11 48675292 48675440 -73168416 - B1_Mus1 SINE Alu 0 148 1 3 956 8710 118 30 135 chr11 48675440 48675756 -73168100 - RLTR22_Mur LTR ERVK -1536 312 1 3 956 799 110 0 8 chr11 48675921 48676049 -73167807 - B1_Mus2 SINE Alu -1 146 20 3 956 672 239 21 0 chr11 48676057 48676199 -73167657 - B1_Mus2 SINE Alu 0 147 3 3 956 648 177 53 0 chr11 48676301 48676436 -73167420 + ORR1D1 LTR MaLR 10 164 -230 3 956 1004 146 0 0 chr11 48676442 48676606 -73167250 + ORR1A4 LTR MaLR 1 164 -165 3 956 542 68 0 0 chr11 48676606 48676680 -73167176 + B2_Mm2 SINE B2 2 75 -120 3 956 768 144 15 22 chr11 48677929 48678064 -73165792 - B1_Mur3 SINE Alu -15 134 1 3 956 703 231 47 42 chr11 48678073 48678263 -73165593 - B3A SINE B2 -3 195 5 3 956 315 0 0 0 chr11 48678847 48678882 -73164974 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 956 1073 121 0 0 chr11 48678883 48679040 -73164816 - B2_Mm2 SINE B2 -37 158 2 3 956 940 96 50 29 chr11 48681023 48681162 -73162694 - B1_Mus1 SINE Alu -6 142 1 3 956 584 254 14 36 chr11 48681310 48681449 -73162407 + RSINE1 SINE B4 1 136 -29 3 956 531 0 0 0 chr11 48681604 48681663 -73162193 + (TCCC)n Simple_repeat Simple_repeat 1 59 0 3 956 1412 40 28 6 chr11 48681663 48681840 -73162016 - B2_Mm2 SINE B2 -14 181 1 3 956 427 230 5 0 chr11 48682353 48682460 -73161396 - PB1D10 SINE Alu -5 112 6 3 956 231 169 0 78 chr11 48685046 48685110 -73158746 + G-rich Low_complexity Low_complexity 3 61 0 3 956 471 232 38 2 chr11 48686467 48686574 -73157282 - B1_Mur1 SINE Alu -34 115 10 3 956 342 0 0 0 chr11 48686945 48686983 -73156873 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 956 220 205 0 0 chr11 48687616 48687655 -73156201 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 956 230 133 44 0 chr11 48688596 48688641 -73155215 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 956 324 203 27 0 chr11 48688745 48688819 -73155037 + MTEb LTR MaLR 288 363 -16 4 956 1309 53 53 0 chr11 48688946 48689117 -73154739 - B2_Mm2 SINE B2 -14 181 2 4 956 979 237 55 4 chr11 48689125 48689225 -73154631 - Lx7 LINE L1 -1410 6286 6178 4 956 369 0 0 0 chr11 48689225 48689266 -73154590 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 956 979 237 55 4 chr11 48689266 48689402 -73154454 - Lx7 LINE L1 -1519 6177 6039 4 956 444 118 0 0 chr11 48689465 48689533 -73154323 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 956 734 293 81 121 chr11 48689533 48689964 -73153892 - Lx8 LINE L1 -34 7439 7026 4 956 719 186 28 7 chr11 48689988 48690129 -73153727 - B3A SINE B2 -53 145 2 4 956 324 0 0 0 chr11 48690469 48690505 -73153351 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 956 629 87 0 11 chr11 48690505 48690598 -73153258 - B2_Mm2 SINE B2 -34 161 70 4 956 217 33 0 0 chr11 48690596 48690626 -73153230 - B3 SINE B2 -185 31 2 4 956 788 262 26 5 chr11 48691389 48691581 -73152275 + B3A SINE B2 2 197 -1 4 956 633 250 189 0 chr11 48692435 48692615 -73151241 + B3 SINE B2 3 216 0 4 956 1170 70 0 0 chr11 48692629 48692787 -73151069 + B2_Mm2 SINE B2 1 158 -37 4 956 324 0 0 0 chr11 48692791 48692827 -73151029 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 4 956 1684 131 45 126 chr11 48692868 48693226 -73150630 + ORR1A4 LTR MaLR 1 329 0 4 956 756 291 83 34 chr11 48693325 48693585 -73150271 + MTEa LTR MaLR 1 280 -99 4 956 827 231 22 191 chr11 48693585 48693825 -73150031 + ORR1D1 LTR MaLR 1 229 -145 4 956 925 85 0 14 chr11 48693825 48693968 -73149888 + (TTCC)n Simple_repeat Simple_repeat 4 144 0 4 956 827 231 22 191 chr11 48693968 48694177 -73149679 + ORR1D1 LTR MaLR 230 374 0 4 956 756 291 83 34 chr11 48694177 48694243 -73149613 + MTEa LTR MaLR 281 343 -36 4 956 655 176 26 0 chr11 48694470 48694703 -73149153 + GA-rich Low_complexity Low_complexity 1 238 0 4 956 6068 179 41 50 chr11 48694807 48695902 -73147954 + Lx5 LINE L1 5842 6915 -135 4 956 375 83 0 0 chr11 48695902 48695962 -73147894 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 956 6068 179 41 50 chr11 48695962 48696086 -73147770 + Lx5 LINE L1 6916 7050 0 4 956 843 115 13 51 chr11 48697098 48697254 -73146602 - B1_Mur4 SINE Alu 0 150 1 4 956 1851 216 62 0 chr11 48697265 48697622 -73146234 - MTE2b LTR MaLR 0 379 1 4 956 423 300 105 24 chr11 48697918 48698200 -73145656 + L1MA5 LINE L1 5972 6288 -9 4 956 926 163 105 0 chr11 48698235 48698407 -73145449 + B2_Mm2 SINE B2 3 192 -3 4 956 21 36 0 0 chr11 48698443 48698471 -73145385 + AT_rich Low_complexity Low_complexity 1 28 0 4 956 510 216 174 193 chr11 48698623 48698841 -73145015 - B3 SINE B2 0 216 3 4 956 504 300 54 104 chr11 48698841 48699120 -73144736 + MLT2D LTR ERVL 80 344 -70 4 956 4400 131 37 97 chr11 48699481 48700426 -73143430 - RMER17A2 LTR ERVK -18 888 1 4 956 284 303 112 17 chr11 48700426 48700658 -73143198 + RLTR15 LTR ERVK 15 268 -91 4 956 3179 209 35 63 chr11 48700818 48701697 -73142159 - RLTR13A LTR ERVK 0 855 1 4 956 426 270 54 0 chr11 48703764 48703912 -73139944 + L1MA4A LINE L1 5782 5937 -366 4 956 647 139 9 0 chr11 48704238 48704353 -73139503 + (GA)n Simple_repeat Simple_repeat 2 117 0 4 956 21 0 0 0 chr11 48704410 48704431 -73139425 + AT_rich Low_complexity Low_complexity 1 21 0 4 956 1486 147 103 118 chr11 48704704 48704947 -73138909 - RMER17C LTR ERVK 0 410 187 4 956 692 43 11 0 chr11 48704947 48705039 -73138817 + (GAA)n Simple_repeat Simple_repeat 3 95 0 4 956 1486 147 103 118 chr11 48705039 48705084 -73138772 - RMER17C LTR ERVK -224 186 156 4 956 243 0 0 0 chr11 48705084 48705111 -73138745 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 956 1486 147 103 118 chr11 48705111 48705237 -73138619 - RMER17C LTR ERVK -255 155 1 4 956 916 149 71 39 chr11 48706163 48706345 -73137511 + B2_Mm2 SINE B2 2 189 -6 4 956 240 259 0 0 chr11 48706778 48706836 -73137020 + GA-rich Low_complexity Low_complexity 2 59 0 4 956 1122 294 83 61 chr11 48706856 48707624 -73136232 + Lx8 LINE L1 4425 5209 -934 4 956 7644 58 16 19 chr11 48709426 48710409 -73133447 + L1_Mus2 LINE L1 5587 6566 0 4 956 876 292 30 55 chr11 48710643 48711009 -73132847 + Lx8 LINE L1 6685 7041 -432 4 956 294 310 29 0 chr11 48711027 48711183 -73132673 + Lx8 LINE L1 5290 5449 -848 4 956 476 288 32 62 chr11 48711294 48711586 -73132270 + Lx8 LINE L1 5608 5937 -360 4 956 524 148 48 29 chr11 48711630 48711734 -73132122 + B1_Mm SINE Alu 42 147 0 4 956 234 0 0 0 chr11 48711878 48711904 -73131952 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 956 400 257 64 29 chr11 48711918 48712058 -73131798 + L1M2 LINE L1 5534 5678 -613 4 956 1457 216 108 50 chr11 48712053 48712434 -73131422 - Lx7 LINE L1 -786 6910 6508 4 956 273 185 0 18 chr11 48712579 48712634 -73131222 + RLTR33 LTR ERVK 1 54 -624 4 956 1381 188 65 12 chr11 48712638 48713014 -73130842 + RLTR33 LTR ERVK 235 678 0 4 956 1660 212 22 51 chr11 48713053 48713490 -73130366 + MT2A LTR ERVL 2 532 -52 4 956 1310 295 104 30 chr11 48713494 48714393 -73129463 + Lx7 LINE L1 5086 6070 -1574 4 956 653 188 36 50 chr11 48714703 48714843 -73129013 + B1_Mur1 SINE Alu 1 138 -11 4 956 691 143 6 11 chr11 48714866 48715043 -73128813 + (CAA)n Simple_repeat Simple_repeat 2 177 0 4 956 527 66 13 0 chr11 48715976 48716052 -73127804 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 956 644 307 38 0 chr11 48716054 48716266 -73127590 - B4 SINE B4 -4 288 69 4 956 204 40 0 0 chr11 48716912 48716937 -73126919 + (T)n Simple_repeat Simple_repeat 1 25 0 4 956 22 0 0 0 chr11 48716960 48716982 -73126874 + AT_rich Low_complexity Low_complexity 1 22 0 4 956 2957 32 0 0 chr11 48716982 48717326 -73126530 - L1Md_T LINE L1 -3 6579 6236 4 956 4020 44 2 0 chr11 48717582 48718105 -73125751 - MTA_Mm-int LTR MaLR -574 524 1 4 956 2448 55 6 0 chr11 48718105 48718433 -73125423 - MTA_Mm LTR MaLR 0 396 67 4 956 614 298 22 37 chr11 48718950 48719271 -73124585 - RLTR15 LTR ERVK -36 323 8 4 956 374 315 48 143 chr11 48719275 48719527 -73124329 + MLT2D LTR ERVL 117 344 -70 4 956 345 297 8 25 chr11 48719534 48719655 -73124201 + GA-rich Low_complexity Low_complexity 3 121 0 4 956 339 299 99 45 chr11 48720036 48720278 -73123578 + RLTR15 LTR ERVK 14 268 -91 4 956 23 0 0 0 chr11 48721877 48721900 -73121956 + AT_rich Low_complexity Low_complexity 1 23 0 4 956 391 277 47 31 chr11 48722541 48722738 -73121118 + L1MA4A LINE L1 5780 5969 -331 4 956 21 0 0 0 chr11 48722851 48722872 -73120984 + AT_rich Low_complexity Low_complexity 1 21 0 4 956 5511 102 62 5 chr11 48723104 48724650 -73119206 + L1VL2 LINE L1 185 1825 -1790 4 956 288 286 0 42 chr11 48724770 48724865 -73118991 - PB1D10 SINE Alu 0 117 27 4 956 882 168 72 39 chr11 48726973 48727153 -73116703 + B2_Mm2 SINE B2 2 187 -8 4 956 226 276 0 0 chr11 48727615 48727673 -73116183 + GA-rich Low_complexity Low_complexity 2 59 0 4 956 991 318 43 48 chr11 48727715 48728466 -73115390 + L1MA4A LINE L1 4462 5208 -935 4 956 282 59 0 0 chr11 48730217 48730251 -73113605 - L1_Mur2 LINE L1 -741 5136 5103 4 956 3866 30 28 0 chr11 48730251 48730685 -73113171 + L1Md_F2 LINE L1 6126 6571 -11 4 956 847 301 42 47 chr11 48730921 48731280 -73112576 + Lx8 LINE L1 6685 7041 -432 4 956 242 316 67 8 chr11 48731298 48731432 -73112424 + L1MA4A LINE L1 5290 5431 -866 4 956 285 275 50 23 chr11 48731577 48731809 -73112047 + L1MA4A LINE L1 5638 5915 -388 4 956 225 94 0 0 chr11 48731842 48731874 -73111982 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 956 417 206 93 0 chr11 48731906 48732003 -73111853 + B1_Mm SINE Alu 42 147 0 4 956 293 180 16 32 chr11 48732279 48732342 -73111514 + RLTR33 LTR ERVK 1 62 -616 4 956 1648 211 155 5 chr11 48732337 48732723 -73111133 + RLTR33 LTR ERVK 235 678 0 4 956 1338 246 98 18 chr11 48732763 48733201 -73110655 + MT2A LTR ERVL 3 526 -7 4 956 213 65 0 0 chr11 48733627 48733658 -73110198 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 956 269 349 15 1 chr11 48733744 48733897 -73109959 + L1_Mur3 LINE L1 3895 4047 -1800 4 956 904 296 69 36 chr11 48733912 48734522 -73109334 + L1M2 LINE L1 4228 4857 -1286 4 956 215 254 17 0 chr11 48734522 48734581 -73109275 + CT-rich Low_complexity Low_complexity 1 60 0 4 956 359 94 0 30 chr11 48735160 48735226 -73108630 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 4 956 874 270 93 19 chr11 48735227 48735495 -73108361 - B4 SINE B4 -2 290 3 4 956 2456 143 31 42 chr11 48736479 48736930 -73106926 - L1_Mur2 LINE L1 -1687 4190 3745 4 956 3075 276 47 36 chr11 48737915 48738996 -73104860 + Lx9 LINE L1 6324 7416 -228 4 956 822 269 58 39 chr11 48739434 48739693 -73104163 - Lx3C LINE L1 -2 6974 6711 4 956 298 297 18 49 chr11 48739825 48739988 -73103868 + L1_Rod LINE L1 1572 1729 -4118 4 956 704 269 53 73 chr11 48740802 48741143 -73102713 - RMER17C LTR ERVK 0 410 77 4 956 524 137 65 0 chr11 48741146 48741299 -73102557 + GA-rich Low_complexity Low_complexity 1 163 0 4 956 226 289 57 93 chr11 48741299 48741547 -73102309 - RMER17C LTR ERVK -165 245 7 4 956 540 30 0 0 chr11 48742220 48742286 -73101570 + (CAAG)n Simple_repeat Simple_repeat 1 66 0 4 956 3048 154 44 34 chr11 48742363 48742959 -73100897 - L1_Mur2 LINE L1 -1630 4247 3646 4 956 24368 65 1 1 chr11 48742953 48746779 -73097077 - L1Md_F2 LINE L1 0 6582 2757 4 956 581 221 96 13 chr11 48746779 48746935 -73096921 + RMER17C LTR ERVK 242 410 0 4 956 437 116 11 34 chr11 48748011 48748100 -73095756 - Lx2A LINE L1 -3 7005 6919 4 956 2641 163 55 4 chr11 48748102 48748576 -73095280 - Lx2A LINE L1 -40 6968 6471 4 956 3000 169 17 8 chr11 48749793 48750228 -73093628 - RLTR28 LTR ERVL 0 524 86 4 956 207 0 0 0 chr11 48750228 48750251 -73093605 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 956 3000 169 17 8 chr11 48750251 48750333 -73093523 - RLTR28 LTR ERVL -439 85 3 4 956 1096 173 53 102 chr11 48750547 48750811 -73093045 + RMER19C LTR ERVK 361 611 0 4 956 1312 292 27 32 chr11 48750811 48751253 -73092603 - MurERV4-int LTR ERVK -278 4982 4543 5 956 25 0 0 0 chr11 48751660 48751685 -73092171 + AT_rich Low_complexity Low_complexity 1 25 0 5 956 1220 192 24 62 chr11 48752307 48752596 -73091260 - Lx5 LINE L1 0 7050 6773 5 956 727 313 29 35 chr11 48753121 48753465 -73090391 - RLTR15 LTR ERVK -17 342 1 5 956 188 79 0 50 chr11 48753540 48753580 -73090276 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 5 956 394 335 59 36 chr11 48753582 48753756 -73090100 + MLT2D LTR ERVL 171 344 -70 5 956 352 273 0 32 chr11 48753758 48753883 -73089973 + GA-rich Low_complexity Low_complexity 2 122 0 5 956 491 280 79 40 chr11 48754266 48754519 -73089337 + RLTR15 LTR ERVK 14 276 -83 5 956 233 29 29 0 chr11 48754727 48754761 -73089095 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 956 7179 101 21 2 chr11 48754776 48756455 -73087401 - L1_Mus1 LINE L1 -1 6566 4859 5 956 207 0 0 0 chr11 48756473 48756496 -73087360 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 956 2995 70 3 5 chr11 48756500 48756875 -73086981 - L1Md_F2 LINE L1 -3 6579 6206 5 119 12321 112 3 5 chr11 48756875 48758848 -73085008 - L1_Mus1 LINE L1 -2809 3074 1105 5 957 3728 210 60 20 chr11 48759652 48760557 -73083299 - L1_Mus1 LINE L1 -5495 1121 181 5 957 427 250 67 13 chr11 48762614 48762764 -73081092 + L1MA4A LINE L1 5782 5939 -364 5 957 6206 119 15 39 chr11 48762912 48764743 -73079113 + L1VL4 LINE L1 14 1777 -1782 5 957 35611 76 12 20 chr11 48764743 48770172 -73073684 + L1Md_F3 LINE L1 213 5586 -297 5 957 8328 52 11 0 chr11 48770172 48771157 -73072699 + L1Md_F3 LINE L1 5587 6582 -2 5 957 804 111 6 151 chr11 48771157 48771316 -73072540 + RLTR9D LTR ERVK 165 300 -103 5 957 16706 171 37 29 chr11 48771320 48775809 -73068047 + Lx LINE L1 2120 6647 -7 5 957 27 29 0 0 chr11 48775951 48775985 -73067871 + AT_rich Low_complexity Low_complexity 1 34 0 5 957 1621 38 0 21 chr11 48775996 48776185 -73067671 - B2_Mm1a SINE B2 -8 185 1 5 957 1713 96 0 0 chr11 48776186 48776405 -73067451 - L1_Mus1 LINE L1 -9 6558 6340 5 957 2445 201 16 51 chr11 48777374 48777572 -73066284 - RLTR31_Mur LTR ERVK -26 527 353 5 957 1183 90 0 0 chr11 48777572 48777727 -73066129 - L1_Mus1 LINE L1 0 6567 6413 5 957 2268 201 16 51 chr11 48777727 48778074 -73065782 - RLTR31_Mur LTR ERVK -201 352 1 5 957 834 133 77 55 chr11 48778530 48778713 -73065143 + B2_Mm2 SINE B2 2 188 -7 5 957 226 276 0 0 chr11 48779179 48779237 -73064619 + GA-rich Low_complexity Low_complexity 2 59 0 5 957 1288 306 43 47 chr11 48779279 48780029 -73063827 + L1M2 LINE L1 4462 5208 -935 5 957 408 95 0 75 chr11 48781679 48781759 -73062097 - L1Md_F2 LINE L1 0 6582 6509 5 957 27274 145 7 15 chr11 48781760 48784843 -73059013 + L1_Mus1 LINE L1 1267 4348 -1535 5 957 185 0 0 39 chr11 48784843 48784869 -73058987 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 5 957 1003 113 0 0 chr11 48784869 48785010 -73058846 - B1_Mm SINE Alu -3 144 4 5 957 27274 145 7 15 chr11 48785010 48785555 -73058301 + L1_Mus1 LINE L1 4349 4876 -1007 5 957 1110 64 0 34 chr11 48785555 48785701 -73058155 - B1_Mus2 SINE Alu -2 145 5 5 957 27274 97 3 8 chr11 48785701 48787419 -73056437 + L1_Mus1 LINE L1 4877 6654 0 5 957 7563 124 26 1 chr11 48787423 48789212 -73054644 + L1_Mus4 LINE L1 4783 6630 -6 5 957 458 292 89 15 chr11 48789239 48789535 -73054321 + Lx7 LINE L1 4514 4827 -1316 5 957 214 236 0 35 chr11 48789538 48789595 -73054261 + CT-rich Low_complexity Low_complexity 1 55 0 5 957 8188 34 1 1 chr11 48789680 48790640 -73053216 + L1Md_A LINE L1 5623 6582 0 5 957 1229 307 104 39 chr11 48790650 48791880 -73051976 + Lx7 LINE L1 5009 6338 -1135 5 957 632 201 33 59 chr11 48792032 48792185 -73051671 + B1_Mur1 SINE Alu 1 149 0 5 957 468 162 0 0 chr11 48793177 48793282 -73050574 + CT-rich Low_complexity Low_complexity 1 105 0 5 957 643 337 43 11 chr11 48793282 48793561 -73050295 - B4 SINE B4 -2 290 3 5 957 366 139 39 19 chr11 48794408 48794511 -73049345 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 5 957 1719 165 142 13 chr11 48794554 48794947 -73048909 + RMER15 LTR ERVL 92 535 -40 5 957 784 91 8 8 chr11 48794947 48795069 -73048787 + L1Md_F2 LINE L1 6438 6559 -23 5 957 330 26 0 0 chr11 48795069 48795108 -73048748 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 957 3733 78 2 0 chr11 48795385 48795962 -73047894 - L1_Mus3 LINE L1 -564 6074 5497 5 957 3684 102 4 6 chr11 48795962 48796494 -73047362 + L1_Mus3 LINE L1 6108 6638 0 5 957 222 341 0 0 chr11 48797778 48797866 -73045990 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 957 2629 162 32 51 chr11 48798577 48799111 -73044745 - RLTR28 LTR ERVL 0 524 1 5 957 2961 282 46 36 chr11 48802298 48803380 -73040476 + Lx9 LINE L1 6324 7416 -228 5 957 187 193 0 50 chr11 48803382 48803442 -73040414 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 5 957 839 257 59 39 chr11 48803829 48804084 -73039772 - Lx3C LINE L1 0 6976 6717 5 957 482 110 0 0 chr11 48804329 48804411 -73039445 + L1Md_F2 LINE L1 6501 6582 0 5 957 667 120 39 39 chr11 48806466 48806725 -73037131 + GA-rich Low_complexity Low_complexity 1 259 0 5 957 207 276 23 11 chr11 48806747 48806835 -73037021 + GA-rich Low_complexity Low_complexity 1 89 0 5 957 549 260 47 0 chr11 48806840 48806967 -73036889 + ETnERV2-int LTR ERVK 7070 7202 -204 5 957 462 79 0 0 chr11 48807354 48807417 -73036439 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 957 338 141 83 14 chr11 48807433 48807505 -73036351 - RMER17C LTR ERVK -328 82 6 5 957 510 67 0 0 chr11 48808177 48808252 -73035604 + (CAAG)n Simple_repeat Simple_repeat 4 78 0 5 957 3234 174 60 11 chr11 48808329 48808455 -73035401 - L1_Mur2 LINE L1 -1630 4247 4126 5 957 312 27 0 0 chr11 48808455 48808492 -73035364 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 957 3234 174 60 11 chr11 48808492 48809026 -73034830 - L1_Mur2 LINE L1 -1752 4125 3554 5 957 2826 171 36 20 chr11 48809026 48809574 -73034282 + Lx LINE L1 6098 6654 0 5 957 462 18 0 0 chr11 48810837 48810892 -73032964 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 957 3358 132 18 33 chr11 48811521 48811934 -73031922 - Lx LINE L1 -923 6074 5694 5 957 5881 89 25 1 chr11 48811934 48812740 -73031116 + L1_Mus2 LINE L1 5742 6566 0 5 957 3358 192 11 138 chr11 48812740 48813259 -73030597 - Lx LINE L1 -183 5697 5256 5 957 649 132 9 0 chr11 48813259 48813365 -73030491 - B2_Mm1t SINE B2 -85 108 2 5 957 3358 192 11 138 chr11 48813365 48813804 -73030052 - Lx LINE L1 -183 5255 4880 5 957 1817 171 134 12 chr11 48813880 48814306 -73029550 + RMER15 LTR ERVL 92 569 -6 5 957 691 223 71 58 chr11 48814701 48815199 -73028657 + RMER17B LTR ERVK 114 439 -519 5 957 23220 76 3 6 chr11 48815307 48817019 -73026837 - L1Md_F2 LINE L1 -13 6569 4873 5 957 4287 63 0 0 chr11 48817019 48817555 -73026301 + L1Md_F2 LINE L1 6047 6582 0 5 957 23220 85 3 3 chr11 48817555 48819660 -73024196 - L1Md_F2 LINE L1 -1011 4872 2757 5 957 564 232 59 13 chr11 48819660 48819813 -73024043 + RMER17C LTR ERVK 242 401 -9 5 957 189 154 0 0 chr11 48820793 48820832 -73023024 + T-rich Low_complexity Low_complexity 3 41 0 5 957 418 111 11 32 chr11 48820886 48820979 -73022877 - Lx2A LINE L1 0 7008 6918 5 957 2625 151 59 0 chr11 48820980 48821424 -73022432 - Lx2A LINE L1 -40 6968 6499 5 957 2849 161 17 10 chr11 48822671 48823107 -73020749 - RLTR28 LTR ERVL 0 524 86 5 957 279 0 0 0 chr11 48823107 48823138 -73020718 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 957 2849 161 17 10 chr11 48823138 48823220 -73020636 - RLTR28 LTR ERVL -439 85 3 5 957 1046 164 53 102 chr11 48823434 48823698 -73020158 + RMER19C LTR ERVK 361 611 0 5 957 1274 294 27 32 chr11 48823698 48824140 -73019716 - MurERV4-int LTR ERVK -278 4982 4543 5 957 25 0 0 0 chr11 48824547 48824572 -73019284 + AT_rich Low_complexity Low_complexity 1 25 0 5 957 1225 196 24 65 chr11 48825194 48825484 -73018372 - Lx5 LINE L1 0 7050 6773 5 957 599 325 18 35 chr11 48825993 48826334 -73017522 - RLTR15 LTR ERVK -17 342 8 5 957 207 24 0 106 chr11 48826415 48826462 -73017394 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 957 313 333 89 9 chr11 48826498 48826610 -73017246 + MLT2D LTR ERVL 213 333 -81 5 957 206 239 0 14 chr11 48826662 48826734 -73017122 + GA-rich Low_complexity Low_complexity 3 73 0 5 957 418 277 83 29 chr11 48827131 48827373 -73016483 + RLTR15 LTR ERVK 14 268 -91 5 957 197 33 33 0 chr11 48827592 48827622 -73016234 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 957 7092 103 21 2 chr11 48827641 48829321 -73014535 - L1_Mus1 LINE L1 -1 6566 4859 5 957 207 0 0 0 chr11 48829339 48829362 -73014494 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 957 2850 70 3 5 chr11 48829366 48829741 -73014115 - L1Md_F2 LINE L1 -3 6579 6206 5 957 12447 129 17 7 chr11 48829741 48832403 -73011453 - L1_Mus1 LINE L1 -2809 3074 384 5 957 479 243 67 7 chr11 48834460 48834609 -73009247 + L1MA4A LINE L1 5782 5939 -364 5 957 6157 118 16 40 chr11 48834757 48836585 -73007271 + L1VL4 LINE L1 14 1777 -1782 5 957 35514 76 12 20 chr11 48836585 48842010 -73001846 + L1Md_F3 LINE L1 213 5586 -297 5 957 8314 52 11 0 chr11 48842010 48842995 -73000861 + L1Md_F3 LINE L1 5587 6582 -2 5 957 804 111 6 151 chr11 48842995 48843154 -73000702 + RLTR9D LTR ERVK 165 300 -103 5 957 16752 175 35 27 chr11 48843158 48847646 -72996210 + Lx LINE L1 2123 6647 -7 5 957 27 29 0 0 chr11 48847793 48847827 -72996029 + AT_rich Low_complexity Low_complexity 1 34 0 5 957 1621 38 0 21 chr11 48847838 48848027 -72995829 - B2_Mm1a SINE B2 -8 185 1 5 957 1713 96 0 0 chr11 48848028 48848247 -72995609 - L1_Mus1 LINE L1 -9 6558 6340 5 957 2441 201 16 51 chr11 48849216 48849414 -72994442 - RLTR31_Mur LTR ERVK -26 527 353 5 957 1196 84 0 0 chr11 48849414 48849569 -72994287 - L1_Mus1 LINE L1 0 6567 6413 5 957 2441 201 16 51 chr11 48849569 48849916 -72993940 - RLTR31_Mur LTR ERVK -201 352 1 5 957 882 134 77 55 chr11 48850373 48850554 -72993302 + B2_Mm2 SINE B2 2 186 -9 5 957 226 276 0 0 chr11 48851022 48851080 -72992776 + GA-rich Low_complexity Low_complexity 2 59 0 5 957 1343 305 43 47 chr11 48851122 48851872 -72991984 + L1M2 LINE L1 4462 5208 -935 5 957 424 95 0 75 chr11 48853522 48853602 -72990254 - L1Md_F2 LINE L1 0 6582 6509 5 957 27491 145 6 14 chr11 48853603 48856686 -72987170 + L1_Mus1 LINE L1 1267 4348 -1535 5 957 185 0 0 39 chr11 48856686 48856712 -72987144 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 5 957 1086 106 0 0 chr11 48856712 48856853 -72987003 - B1_Mm SINE Alu -3 144 4 5 957 27491 145 6 14 chr11 48856853 48857398 -72986458 + L1_Mus1 LINE L1 4349 4876 -1007 5 957 1183 63 0 34 chr11 48857398 48857545 -72986311 - B1_Mus2 SINE Alu -1 146 5 6 957 27491 98 3 7 chr11 48857545 48859255 -72984601 + L1_Mus1 LINE L1 4877 6567 0 5 957 7545 125 26 1 chr11 48859263 48861057 -72982799 + L1_Mus4 LINE L1 4778 6630 -6 6 957 473 350 47 7 chr11 48861084 48861380 -72982476 + Lx7 LINE L1 4514 4821 -1059 6 957 8537 36 1 1 chr11 48861521 48862481 -72981375 + L1Md_T LINE L1 5623 6582 0 6 957 1271 307 102 37 chr11 48862490 48863724 -72980132 + Lx7 LINE L1 5009 6338 -1135 6 957 684 201 33 59 chr11 48863876 48864029 -72979827 + B1_Mur1 SINE Alu 1 149 0 6 957 468 162 0 0 chr11 48865021 48865126 -72978730 + CT-rich Low_complexity Low_complexity 1 105 0 6 957 687 310 46 14 chr11 48865126 48865407 -72978449 - B4 SINE B4 0 292 3 6 957 366 139 39 19 chr11 48866254 48866357 -72977499 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 6 957 1863 165 142 13 chr11 48866400 48866793 -72977063 + RMER15 LTR ERVL 92 535 -40 6 957 776 100 8 0 chr11 48866793 48866913 -72976943 + L1Md_F2 LINE L1 6438 6558 -24 6 957 507 33 0 0 chr11 48866913 48866974 -72976882 + (TAA)n Simple_repeat Simple_repeat 3 63 0 6 957 3743 78 2 0 chr11 48867251 48867828 -72976028 - L1_Mus3 LINE L1 -564 6074 5497 6 957 3899 102 4 6 chr11 48867828 48868360 -72975496 + L1_Mus3 LINE L1 6108 6638 0 6 957 222 341 0 0 chr11 48869645 48869733 -72974123 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 957 2659 170 24 51 chr11 48870445 48870978 -72972878 - RLTR28 LTR ERVL -5 519 1 6 957 227 318 0 0 chr11 48871499 48871565 -72972291 + MTE2b LTR MaLR 1 66 -313 6 957 235 157 39 19 chr11 48873771 48873823 -72970033 + MLT1F2 LTR MaLR 1 53 -507 6 957 3126 277 41 31 chr11 48874165 48875208 -72968648 + Lx9 LINE L1 6324 7377 -267 6 957 274 231 0 44 chr11 48875255 48875323 -72968533 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 6 957 801 261 59 39 chr11 48875703 48875958 -72967898 - Lx3C LINE L1 0 6976 6717 6 957 465 136 0 0 chr11 48876204 48876285 -72967571 + L1Md_F2 LINE L1 6502 6582 0 6 957 183 80 0 0 chr11 48876923 48876948 -72966908 + (A)n Simple_repeat Simple_repeat 1 25 0 6 957 721 272 55 61 chr11 48877827 48878156 -72965700 - RMER17C LTR ERVK 0 410 84 6 957 374 99 42 42 chr11 48878170 48878265 -72965591 + GA-rich Low_complexity Low_complexity 2 96 0 6 957 1053 40 0 0 chr11 48878267 48878391 -72965465 + L1Md_F3 LINE L1 5463 5586 -297 6 957 8427 43 21 1 chr11 48878391 48879369 -72964487 + L1Md_F3 LINE L1 5587 6584 0 6 957 21 0 0 0 chr11 48880240 48880261 -72963595 + AT_rich Low_complexity Low_complexity 1 21 0 6 957 933 134 73 39 chr11 48881702 48881881 -72961975 + B2_Mm2 SINE B2 2 186 -9 6 957 180 182 0 0 chr11 48882351 48882395 -72961461 + GA-rich Low_complexity Low_complexity 2 45 0 6 957 1108 309 72 43 chr11 48882414 48883176 -72960680 + L1M2 LINE L1 4425 5208 -935 6 957 249 231 0 15 chr11 48884837 48884903 -72958953 + ID_B1 SINE B4 103 167 -57 6 957 244 308 0 32 chr11 48884903 48884931 -72958925 + PB1D10 SINE Alu 22 112 -5 6 957 885 275 71 54 chr11 48885154 48885507 -72958349 + Lx8 LINE L1 6685 7043 -430 6 957 316 294 73 18 chr11 48885816 48886052 -72957804 + Lx9 LINE L1 5608 5891 -1753 6 957 234 0 0 0 chr11 48886079 48886105 -72957751 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 957 482 158 48 29 chr11 48886125 48886229 -72957627 + B1_Mm SINE Alu 42 147 0 6 957 1541 253 18 25 chr11 48886483 48886884 -72956972 + RLTR33 LTR ERVK 281 678 0 6 957 1589 241 37 14 chr11 48886921 48887379 -72956477 + MT2A LTR ERVL 2 526 -7 6 957 1054 314 113 28 chr11 48887825 48888686 -72955170 + L1_Mur3 LINE L1 3892 4825 -1055 6 957 222 246 0 17 chr11 48888686 48888744 -72955112 + CT-rich Low_complexity Low_complexity 1 57 0 6 957 463 243 46 22 chr11 48888818 48888990 -72954866 + L1M3 LINE L1 4528 4703 -1440 6 957 648 67 0 0 chr11 48889455 48889545 -72954311 + (TCTCTG)n Simple_repeat Simple_repeat 6 95 0 6 957 189 0 0 0 chr11 48889545 48889566 -72954290 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 957 828 278 62 4 chr11 48889566 48889840 -72954016 - B4 SINE B4 0 292 3 6 958 506 67 0 13 chr11 48890972 48891048 -72952808 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 958 354 217 0 0 chr11 48892393 48892453 -72951403 + MYSERV6-int LTR ERVK 7568 7627 -1332 6 958 232 296 106 78 chr11 48893841 48894163 -72949693 + L1_Rod LINE L1 1476 1806 -4041 6 958 240 35 0 0 chr11 48894643 48894672 -72949184 + (CAGGG)n Simple_repeat Simple_repeat 2 30 0 6 958 820 156 0 27 chr11 48894674 48894859 -72948997 + GA-rich Low_complexity Low_complexity 1 180 0 6 958 21 57 0 0 chr11 48896025 48896060 -72947796 + AT_rich Low_complexity Low_complexity 1 35 0 6 958 1734 213 26 118 chr11 48897709 48898011 -72945845 - MTD LTR MaLR 0 419 120 6 958 724 193 28 7 chr11 48898011 48898152 -72945704 + B1_Mur2 SINE Alu 4 147 -2 6 958 1734 213 26 118 chr11 48898152 48898306 -72945550 - MTD LTR MaLR -300 119 5 6 958 1197 62 0 0 chr11 48899613 48899758 -72944098 + B1_Mm SINE Alu 3 147 0 6 958 210 24 0 87 chr11 48899759 48899805 -72944051 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 958 291 302 62 41 chr11 48899955 48900100 -72943756 + MTE2b LTR MaLR 71 218 -161 6 958 962 73 7 0 chr11 48900932 48901068 -72942788 + (TTCCC)n Simple_repeat Simple_repeat 5 141 0 6 958 1022 138 6 0 chr11 48901079 48901253 -72942603 + (TTCC)n Simple_repeat Simple_repeat 1 175 0 6 958 212 297 9 38 chr11 48902579 48902672 -72941184 + CT-rich Low_complexity Low_complexity 15 104 0 6 958 238 239 13 66 chr11 48902672 48902748 -72941108 - ID2 SINE ID -10 73 2 6 958 212 297 9 38 chr11 48902748 48902759 -72941097 + polypyrimidine Low_complexity Low_complexity 4 14 0 6 958 265 313 12 24 chr11 48902819 48902904 -72940952 - RSINE1 SINE B4 0 165 82 6 958 304 265 54 12 chr11 48903027 48903126 -72940730 - RSINE1 SINE B4 -188 104 1 6 958 862 76 0 15 chr11 48903568 48903701 -72940155 - L1_Mus2 LINE L1 0 6566 6436 6 958 310 189 60 108 chr11 48903707 48903790 -72940066 - PB1D10 SINE Alu -5 112 34 6 958 339 119 0 0 chr11 48903932 48903999 -72939857 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 6 958 234 0 0 0 chr11 48904001 48904027 -72939829 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 958 303 256 73 22 chr11 48904116 48904252 -72939604 - RLTR21 LTR ERVK -677 895 753 6 958 239 261 94 29 chr11 48904597 48904735 -72939121 - RLTR21 LTR ERVK -1039 533 387 6 958 2160 162 33 24 chr11 48904706 48905130 -72938726 - RMER12B LTR ERVK -976 428 1 6 958 606 225 208 0 chr11 48905224 48905402 -72938454 - B3 SINE B2 0 216 2 6 958 3521 122 40 9 chr11 48905711 48906258 -72937598 + Lx4A LINE L1 6495 7058 0 6 958 1323 258 114 50 chr11 48906320 48906742 -72937114 + Lx7 LINE L1 7025 7457 -239 6 958 357 24 0 0 chr11 48906742 48906784 -72937072 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 958 1323 258 114 50 chr11 48906784 48906924 -72936932 + Lx7 LINE L1 7458 7622 -74 6 958 262 294 32 11 chr11 48908085 48908178 -72935678 - B1F SINE Alu -33 116 22 6 958 291 258 0 0 chr11 48908442 48908504 -72935352 - MLT1D LTR MaLR -43 424 363 6 958 365 291 54 41 chr11 48908524 48908671 -72935185 - MLT1D LTR MaLR -347 158 10 6 958 551 223 7 54 chr11 48911921 48912068 -72931788 + RSINE1 SINE B4 5 144 -21 6 958 414 0 0 0 chr11 48912648 48912694 -72931162 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 958 837 203 65 48 chr11 48912948 48913196 -72930660 + RMER10A LTR ERVL 63 314 -128 6 958 229 271 115 0 chr11 48913196 48913318 -72930538 + L1M5 LINE L1 2897 3032 -3114 6 958 464 114 0 25 chr11 48913323 48913404 -72930452 + L1Md_F2 LINE L1 6502 6580 -2 6 958 1140 173 105 136 chr11 48913569 48913997 -72929859 - RMER10A LTR ERVL -1 441 27 6 958 734 265 94 94 chr11 48914111 48914782 -72929074 - RMER17C-int LTR ERVK -141 3097 2610 6 958 558 282 182 26 chr11 48914796 48915142 -72928714 - RLTR12B LTR ERVK -82 446 47 6 958 324 330 78 5 chr11 48916148 48916352 -72927504 + Tigger5 DNA MER2_type 2155 2373 -33 6 958 315 299 52 99 chr11 48916482 48916734 -72927122 - ORR1E LTR MaLR -119 240 1 6 958 249 33 0 0 chr11 48917210 48917240 -72926616 + (TCCG)n Simple_repeat Simple_repeat 3 32 0 6 958 231 265 22 50 chr11 48917647 48917786 -72926070 + GA-rich Low_complexity Low_complexity 1 135 0 6 958 195 130 18 36 chr11 48917812 48917868 -72925988 + GA-rich Low_complexity Low_complexity 5 59 0 6 958 529 127 91 0 chr11 48918027 48918137 -72925719 + MYSERV16_I-int LTR ERVK 1157 1276 -1050 6 958 523 79 0 0 chr11 48918137 48918213 -72925643 + BGLII LTR ERVK 346 421 0 6 958 279 0 0 0 chr11 48918806 48918837 -72925019 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 958 1026 24 80 0 chr11 48918838 48918963 -72924893 - B1_Mus1 SINE Alu -12 136 2 6 958 1167 65 0 0 chr11 48919091 48919244 -72924612 + B2_Mm2 SINE B2 2 154 -41 6 958 288 0 0 0 chr11 48919245 48919277 -72924579 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 6 958 442 212 0 0 chr11 48920338 48920418 -72923438 + B3 SINE B2 7 86 -130 6 958 1653 245 26 83 chr11 48920423 48920926 -72922930 - Lx6 LINE L1 -26 7434 6961 6 958 1486 89 331 16 chr11 48920926 48921246 -72922610 + RMER6A LTR ERVK 1 421 -335 6 958 1435 122 18 116 chr11 48921668 48922003 -72921853 + RMER6A LTR ERVK 420 721 -35 6 958 3007 50 3 10 chr11 48922003 48922388 -72921468 + L1Md_F2 LINE L1 6189 6570 -12 6 958 1031 259 103 6 chr11 48922418 48922729 -72921127 - Lx6 LINE L1 -574 6886 6546 6 958 405 0 0 0 chr11 48922877 48922922 -72920934 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 958 243 0 0 0 chr11 48922922 48922948 -72920908 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 958 2872 69 55 3 chr11 48923417 48923797 -72920059 - MTB LTR MaLR 0 400 1 6 958 342 243 120 46 chr11 48923920 48923957 -72919899 - PB1D10 SINE Alu -1 116 4 6 958 404 206 0 0 chr11 48923957 48924025 -72919831 - ID_B1 SINE B4 -73 151 84 6 958 548 186 0 6 chr11 48924882 48925055 -72918801 + CT-rich Low_complexity Low_complexity 1 172 0 6 958 235 212 24 0 chr11 48927509 48927594 -72916262 + Lx5 LINE L1 6964 7050 0 6 958 369 0 0 0 chr11 48927705 48927746 -72916110 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 958 370 270 52 0 chr11 48928075 48928190 -72915666 + L1MA5 LINE L1 6168 6288 -12 7 958 293 200 0 0 chr11 48928796 48928851 -72915005 + PB1D10 SINE Alu 32 86 -31 7 958 280 85 106 0 chr11 48928851 48928898 -72914958 - ORR1C2 LTR MaLR -3 381 330 7 958 7622 102 30 53 chr11 48928898 48929979 -72913877 - L1_Mus3 LINE L1 -8 6630 5486 7 958 1008 106 0 0 chr11 48929979 48930130 -72913726 + LTRIS_Mus LTR ERV1 437 587 0 7 958 7622 102 30 53 chr11 48930130 48930423 -72913433 - L1_Mus3 LINE L1 -8 5485 5174 7 958 951 138 42 0 chr11 48930423 48930590 -72913266 - ORR1C2 LTR MaLR -37 347 174 7 958 622 48 29 19 chr11 48930590 48930695 -72913161 + (GGGAGA)n Simple_repeat Simple_repeat 5 110 0 7 958 874 186 21 32 chr11 48930699 48930888 -72912968 - ORR1C2 LTR MaLR -197 187 1 7 958 1811 143 3 35 chr11 48931554 48931872 -72911984 + L1VL1 LINE L1 38 345 -6077 7 958 485 105 79 0 chr11 48931876 48931952 -72911904 - L1_Mm LINE L1 -1177 4706 4625 7 958 4625 112 35 46 chr11 48931952 48932717 -72911139 + MYSERV6-int LTR ERVK 268 1024 -7935 7 958 315 118 20 0 chr11 48933371 48933422 -72910434 + MYSERV6-int LTR ERVK 1582 1633 -7326 7 958 22385 131 25 59 chr11 48933452 48936876 -72906980 + MYSERV6-int LTR ERVK 1632 5020 -3939 7 958 222 228 193 0 chr11 48936876 48936933 -72906923 + B1_Mur4 SINE Alu 5 72 -78 7 958 22385 131 25 59 chr11 48936933 48936969 -72906887 + MYSERV6-int LTR ERVK 5021 5055 -3904 7 958 214 227 23 0 chr11 48936969 48937013 -72906843 + B1_Mur4 SINE Alu 6 50 -100 7 958 22385 131 25 59 chr11 48937013 48937494 -72906362 + MYSERV6-int LTR ERVK 5056 5534 -3425 7 958 1974 197 97 24 chr11 48937495 48937547 -72906309 + RLTR19 LTR ERVK 4 58 -441 7 958 2943 150 152 28 chr11 48937547 48938088 -72905768 + RMER19C LTR ERVK 2 609 -2 7 958 1974 197 97 24 chr11 48938088 48938497 -72905359 + RLTR19 LTR ERVK 59 498 -1 7 958 6327 206 67 64 chr11 48938497 48939669 -72904187 + MYSERV6-int LTR ERVK 5530 6807 -2152 7 958 864 53 8 95 chr11 48939669 48939795 -72904061 - L1_Mus2 LINE L1 -123 6443 6329 7 958 999 54 0 0 chr11 48939795 48939924 -72903932 + L1_Mus2 LINE L1 6438 6566 0 7 958 6327 206 67 64 chr11 48939924 48940856 -72903000 + MYSERV6-int LTR ERVK 6808 7768 -1191 7 958 2883 115 35 20 chr11 48940857 48941311 -72902545 + RMER6B LTR ERVK 1 461 0 7 958 878 215 116 40 chr11 48941495 48941771 -72902085 - Lx7 LINE L1 -1 7695 7399 7 958 342 0 0 0 chr11 48941775 48941813 -72902043 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 958 783 40 0 0 chr11 48941813 48941911 -72901945 + (CA)n Simple_repeat Simple_repeat 1 99 0 7 958 1052 63 0 7 chr11 48942321 48942465 -72901391 - B1_Mus1 SINE Alu 0 148 6 7 958 244 256 8 37 chr11 48942362 48942496 -72901360 - ORR1B1-int LTR MaLR -755 754 625 7 958 343 68 34 0 chr11 48942603 48942662 -72901194 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 958 314 231 0 11 chr11 48942662 48942754 -72901102 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 7 958 189 132 0 0 chr11 48942755 48942793 -72901063 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 958 658 171 279 41 chr11 48942811 48943076 -72900780 - Lx7 LINE L1 -407 7289 6962 7 958 459 0 0 0 chr11 48943766 48943817 -72900039 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 958 405 0 0 0 chr11 48945872 48945917 -72897939 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 7 958 297 0 0 0 chr11 48946200 48946233 -72897623 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 958 637 230 7 26 chr11 48946872 48947024 -72896832 + B1F SINE Alu 1 149 0 7 958 293 313 53 38 chr11 48947078 48947144 -72896712 - RMER12 LTR ERVK -462 860 797 7 958 225 0 0 0 chr11 48947144 48947169 -72896687 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 958 293 313 53 38 chr11 48947169 48947235 -72896621 - RMER12 LTR ERVK -526 796 726 7 958 697 302 6 0 chr11 48947170 48947349 -72896507 - B3A SINE B2 -18 180 1 7 958 515 81 12 0 chr11 48949065 48949151 -72894705 + (TC)n Simple_repeat Simple_repeat 1 87 0 7 958 495 0 0 0 chr11 48949151 48949206 -72894650 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 958 552 259 19 45 chr11 48949248 48949402 -72894454 + RSINE1 SINE B4 2 151 -14 7 958 198 0 0 0 chr11 48949406 48949428 -72894428 + (CATA)n Simple_repeat Simple_repeat 1 22 0 7 958 1443 273 70 75 chr11 48949478 48950344 -72893512 - L1M4 LINE L1 -792 5354 4493 7 958 1568 307 44 48 chr11 48950389 48950521 -72893335 + Lx9 LINE L1 6786 6908 -736 7 958 704 176 66 0 chr11 48950521 48950657 -72893199 - B1_Mur1 SINE Alu 0 149 5 7 958 1568 307 44 48 chr11 48950657 48951143 -72892713 + Lx9 LINE L1 6909 7401 -243 7 958 27 29 0 0 chr11 48951309 48951343 -72892513 + AT_rich Low_complexity Low_complexity 1 34 0 7 958 1265 269 82 25 chr11 48951346 48951910 -72891946 + L1M3 LINE L1 3770 4365 -1775 7 958 842 288 14 5 chr11 48951989 48952209 -72891647 + B4A SINE B4 48 269 -23 7 958 378 0 0 0 chr11 48952210 48952252 -72891604 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 958 921 261 162 32 chr11 48952257 48952700 -72891156 + L1M3 LINE L1 4392 4892 -1251 7 958 239 369 135 12 chr11 48952735 48952905 -72890951 - B4A SINE B4 0 292 102 7 958 1261 294 82 104 chr11 48952938 48953206 -72890650 + L1MA5 LINE L1 4843 5134 -713 7 958 757 287 0 0 chr11 48953206 48953387 -72890469 + B3A SINE B2 2 182 -16 7 958 1445 294 82 104 chr11 48953387 48954148 -72889708 + L1MA5 LINE L1 5135 5917 -383 7 958 482 325 30 56 chr11 48954152 48954528 -72889328 - Lx7 LINE L1 -2 7471 7089 7 958 831 21 0 0 chr11 48954528 48954625 -72889231 + (TCCC)n Simple_repeat Simple_repeat 1 97 0 7 958 408 50 36 48 chr11 48954636 48954720 -72889136 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 7 958 408 20 0 0 chr11 48954729 48954778 -72889078 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 958 366 207 72 12 chr11 48955209 48955292 -72888564 - PB1D7 SINE Alu -6 114 27 7 958 239 79 26 0 chr11 48957421 48957459 -72886397 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 958 532 160 8 48 chr11 48958127 48958252 -72885604 + PB1D9 SINE Alu 1 120 0 7 958 786 97 0 0 chr11 48959334 48959447 -72884409 + (TG)n Simple_repeat Simple_repeat 1 113 0 7 958 611 205 11 0 chr11 48959447 48959569 -72884287 - B1_Mur3 SINE Alu -15 134 1 7 958 25 0 0 0 chr11 48959774 48959799 -72884057 + AT_rich Low_complexity Low_complexity 1 25 0 7 958 625 198 0 0 chr11 48959969 48960075 -72883781 + B1_Mur3 SINE Alu 1 106 -43 7 958 433 164 19 28 chr11 48960153 48960260 -72883596 - Lx2A1 LINE L1 -18 6990 6885 7 958 397 248 185 44 chr11 48960270 48960405 -72883451 + RSINE1 SINE B4 4 157 -8 7 958 663 116 0 0 chr11 48960407 48960519 -72883337 + (CA)n Simple_repeat Simple_repeat 1 112 0 7 958 405 252 0 61 chr11 48960667 48960781 -72883075 - PB1D10 SINE Alu -4 113 7 7 958 250 286 0 0 chr11 48961015 48961106 -72882750 + T-rich Low_complexity Low_complexity 1 91 0 7 958 292 282 0 0 chr11 48961170 48961241 -72882615 - ID4 SINE ID -6 77 7 7 958 985 127 42 0 chr11 48961463 48961605 -72882251 + B1_Mur4 SINE Alu 3 150 0 7 958 540 0 0 0 chr11 48961655 48961715 -72882141 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 958 227 196 54 0 chr11 48962831 48962887 -72880969 - L1MEc LINE L1 -4702 1698 1640 7 958 301 258 21 21 chr11 48963156 48963251 -72880605 - PB1D10 SINE Alu 0 117 23 7 958 247 204 37 0 chr11 48963458 48963512 -72880344 + MER58A DNA MER1_type 1 56 -168 7 958 234 315 37 9 chr11 48963525 48963634 -72880222 + MER58A DNA MER1_type 111 222 -2 7 958 225 94 0 0 chr11 48964347 48964379 -72879477 + (T)n Simple_repeat Simple_repeat 1 32 0 7 958 259 333 0 0 chr11 48964439 48964517 -72879339 + PB1D10 SINE Alu 38 115 -2 7 958 232 310 40 40 chr11 48964604 48964678 -72879178 + ID4 SINE ID 4 77 -6 7 958 443 254 73 0 chr11 48965024 48965134 -72878722 + Lx7 LINE L1 6959 7076 -620 7 958 430 258 44 22 chr11 48965218 48965353 -72878503 - B3A SINE B2 -2 196 59 7 958 1097 271 70 39 chr11 48965353 48965881 -72877975 + Lx7 LINE L1 7077 7678 -18 7 958 327 272 12 12 chr11 48965944 48966026 -72877830 - ID4_ SINE ID -1 82 1 7 958 964 106 161 6 chr11 48966411 48966572 -72877284 + B2_Mm2 SINE B2 2 187 -8 7 958 357 268 0 51 chr11 48967189 48967307 -72876549 - ID_B1 SINE B4 -20 204 93 7 958 463 235 0 71 chr11 48967307 48967340 -72876516 - B1_Mur1 SINE Alu -23 121 1 7 958 485 189 38 38 chr11 48967341 48967473 -72876383 + MER89 LTR ERV1 428 559 0 7 958 350 243 0 0 chr11 48968705 48968775 -72875081 - PB1D7 SINE Alu -49 71 2 7 958 284 218 56 33 chr11 48968860 48968950 -72874906 + MER67C LTR ERV1 327 418 -293 7 958 211 204 159 0 chr11 48969126 48969170 -72874686 - PB1D10 SINE Alu -43 74 24 7 958 346 329 106 18 chr11 48969180 48969406 -72874450 - L1MA7 LINE L1 -2 6289 6044 7 958 336 232 55 85 chr11 48969794 48969959 -72873897 - MER67C LTR ERV1 -19 692 533 7 958 433 307 83 21 chr11 48970555 48970748 -72873108 - MER67C LTR ERV1 -228 483 279 7 958 201 163 45 23 chr11 48972162 48972206 -72871650 + CT-rich Low_complexity Low_complexity 1 45 0 7 958 1131 83 0 0 chr11 48972268 48972424 -72871432 + (TC)n Simple_repeat Simple_repeat 2 157 0 7 958 640 167 0 0 chr11 48972425 48972533 -72871323 - B1_Mur2 SINE Alu -17 132 25 7 958 317 294 8 68 chr11 48972534 48972651 -72871205 - MER67C LTR ERV1 -452 259 150 7 958 519 170 30 10 chr11 48972748 48972849 -72871007 + ID_B1 SINE B4 121 223 -1 7 958 264 253 121 0 chr11 48972855 48972946 -72870910 - MER67C LTR ERV1 -548 163 62 7 958 463 270 80 13 chr11 48972974 48973124 -72870732 - RSINE1 SINE B4 -2 163 4 7 958 765 267 47 14 chr11 48974801 48975014 -72868842 + ID_B1 SINE B4 4 223 -1 7 958 199 235 39 0 chr11 48975138 48975189 -72868667 + MIR SINE MIR 89 141 -67 7 958 242 338 13 0 chr11 48975942 48976019 -72867837 - ID4 SINE ID -2 81 4 7 958 909 132 225 0 chr11 48976264 48976446 -72867410 + URR1B DNA MER1_type 1 223 -2 7 958 217 277 185 0 chr11 48976520 48976585 -72867271 - ID4_ SINE ID -6 77 1 7 958 304 324 72 14 chr11 48976692 48976830 -72867026 - B1F2 SINE Alu -2 147 2 7 958 255 254 0 167 chr11 48976913 48977045 -72866811 - PB1D10 SINE Alu -3 114 5 7 958 371 323 91 79 chr11 48977524 48977931 -72865925 - RLTR11A2 LTR ERVK 0 527 116 7 958 351 284 0 24 chr11 48978270 48978353 -72865503 - ID4 SINE ID 0 83 3 7 958 328 281 101 75 chr11 48978818 48979009 -72864847 + B4A SINE B4 105 287 -5 7 958 195 42 0 0 chr11 48979012 48979036 -72864820 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 958 2835 174 20 91 chr11 48979354 48980012 -72863844 - RMER19C LTR ERVK 0 611 1 7 958 918 78 0 0 chr11 48980527 48980655 -72863201 + B1_Mus1 SINE Alu 12 139 -9 7 958 531 0 0 0 chr11 48980656 48980715 -72863141 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 958 2033 249 36 16 chr11 48980829 48981444 -72862412 - Lx6 LINE L1 -26 7434 6470 8 958 544 211 120 19 chr11 48981771 48981979 -72861877 - Lx9 LINE L1 0 7644 7416 8 958 318 50 0 0 chr11 48982275 48982315 -72861541 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 958 324 247 0 34 chr11 48983239 48983327 -72860529 + CT-rich Low_complexity Low_complexity 3 87 0 8 958 402 236 8 83 chr11 48983740 48983860 -72859996 - PB1D10 SINE Alu -6 111 1 8 958 387 0 0 0 chr11 48985064 48985107 -72858749 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 958 1087 171 178 55 chr11 48985778 48986143 -72857713 + RMER10A LTR ERVL 33 442 0 8 958 273 295 65 16 chr11 48986395 48986519 -72857337 + Tigger5 DNA MER2_type 44 173 -2233 8 958 271 261 149 21 chr11 48986582 48986676 -72857180 + Tigger5 DNA MER2_type 2300 2405 -1 8 958 181 120 0 57 chr11 48987510 48987563 -72856293 + T-rich Low_complexity Low_complexity 3 52 0 8 958 252 77 0 0 chr11 48989896 48989935 -72853921 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 958 2609 49 64 6 chr11 48989950 48990277 -72853579 + ORR1A1 LTR MaLR 1 346 0 8 958 2370 252 51 73 chr11 48990667 48991417 -72852439 + Lx5 LINE L1 6300 7032 -18 8 958 1120 163 171 14 chr11 48991472 48991561 -72852295 + ORR1C1 LTR MaLR 55 157 -221 8 958 504 0 0 0 chr11 48991561 48991617 -72852239 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 958 1120 163 171 14 chr11 48991617 48991807 -72852049 + ORR1C1 LTR MaLR 158 377 -1 8 958 284 232 29 0 chr11 48992831 48992900 -72850956 - ID4 SINE ID -10 73 3 8 958 327 121 0 0 chr11 48992958 48993016 -72850840 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 958 1080 227 170 30 chr11 48994849 48995213 -72848643 - MTC LTR MaLR 0 421 7 8 958 207 69 0 0 chr11 48995640 48995669 -72848187 + (TCTCTG)n Simple_repeat Simple_repeat 4 32 0 8 958 459 196 11 19 chr11 48996137 48996243 -72847613 + PB1D10 SINE Alu 9 115 -2 8 958 398 278 0 9 chr11 48997481 48997590 -72846266 + PB1D10 SINE Alu 9 116 -1 8 958 465 19 0 0 chr11 48998763 48998817 -72845039 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 958 414 0 0 0 chr11 48999055 48999101 -72844755 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 958 2000 208 132 9 chr11 49001544 49002000 -72841856 - RLTR18B LTR ERVK 0 512 1 1 958 2777 146 14 23 chr11 49002000 49002485 -72841371 - RLTR18-int LTR ERVK 0 5361 4881 1 958 264 40 60 0 chr11 49002820 49002870 -72840986 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 958 4596 137 72 7 chr11 49003148 49003915 -72839941 - RLTR18-int LTR ERVK -1140 4221 3405 1 958 3084 166 57 10 chr11 49003940 49004517 -72839339 - RLTR18-int LTR ERVK -2160 3201 2598 1 958 180 0 0 0 chr11 49005140 49005160 -72838696 + (T)n Simple_repeat Simple_repeat 1 20 0 3 958 624 254 43 38 chr11 49005582 49005766 -72838090 - ID_B1 SINE B4 0 224 40 4 958 28 86 0 0 chr11 49005841 49005911 -72837945 + AT_rich Low_complexity Low_complexity 1 70 0 5 958 374 343 80 35 chr11 49006071 49006385 -72837471 - L1M5 LINE L1 -3196 2950 2623 6 958 2962 47 15 0 chr11 49006482 49006823 -72837033 + ORR1A1 LTR MaLR 1 346 0 7 958 180 0 0 0 chr11 49007592 49007612 -72836244 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 958 1279 48 7 0 chr11 49007626 49007772 -72836084 - B1_Mm SINE Alu 0 147 1 9 958 3455 80 23 23 chr11 49007972 49008447 -72835409 - IAPLTR2_Mm LTR ERVK 0 475 1 1 958 338 228 38 12 chr11 49008686 49008766 -72835090 + HAL1-3A_ME LINE L1 1968 2049 -809 1 958 391 337 68 34 chr11 49008950 49009156 -72834700 - MIR SINE MIR -2 260 48 1 958 736 227 7 21 chr11 49009297 49009441 -72834415 - RSINE1 SINE B4 -21 144 3 1 958 247 319 29 0 chr11 49010288 49010357 -72833499 - FLAM_A SINE Alu -223 72 2 1 958 640 283 82 46 chr11 49010411 49010741 -72833115 + MLT1C LTR MaLR 1 353 -114 1 958 1050 134 14 0 chr11 49010773 49010915 -72832941 + B1_Mur4 SINE Alu 1 144 -6 1 958 271 89 18 18 chr11 49010918 49010975 -72832881 + (CAAAC)n Simple_repeat Simple_repeat 3 59 0 1 958 710 294 64 91 chr11 49011001 49011297 -72832559 - B4A SINE B4 0 292 5 1 958 2489 109 188 0 chr11 49011449 49011816 -72832040 + RLTR10C LTR ERVK 1 436 0 1 958 326 320 106 54 chr11 49011887 49012185 -72831671 - ORR1E LTR MaLR 0 370 51 2 958 526 330 58 32 chr11 49012249 49012651 -72831205 - RLTR12B LTR ERVK -68 291 1 2 958 810 226 94 26 chr11 49012933 49013124 -72830732 - B3 SINE B2 -11 205 2 2 958 321 265 84 47 chr11 49013491 49013598 -72830258 - PB1 SINE Alu -3 124 14 2 958 25 65 0 0 chr11 49013645 49013691 -72830165 + AT_rich Low_complexity Low_complexity 1 46 0 2 958 585 190 10 0 chr11 49014815 49014915 -72828941 + B1_Mur1 SINE Alu 49 149 0 2 958 379 246 25 25 chr11 49014965 49015086 -72828770 - MER33 DNA MER1_type -185 139 19 2 958 402 208 0 0 chr11 49015145 49015299 -72828557 + (TG)n Simple_repeat Simple_repeat 1 154 0 2 958 237 253 108 0 chr11 49015656 49015739 -72828117 - Charlie5 DNA MER1_type -2523 101 10 2 958 1713 160 97 27 chr11 49016131 49016503 -72827353 - RMER10B LTR ERVL 0 398 1 2 958 461 80 13 0 chr11 49017768 49017843 -72826013 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 958 426 105 92 59 chr11 49019315 49019411 -72824445 + PB1D9 SINE Alu 7 104 -46 3 958 257 51 26 0 chr11 49019414 49019453 -72824403 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 958 1216 56 7 0 chr11 49019761 49019904 -72823952 - B1_Mus1 SINE Alu 0 148 5 3 958 423 306 151 71 chr11 49020337 49020598 -72823258 - MLT1A1 LTR MaLR -29 379 89 3 958 380 279 31 54 chr11 49020598 49020727 -72823129 + PB1 SINE Alu 2 127 0 3 958 423 306 151 71 chr11 49020727 49020789 -72823067 - MLT1A1 LTR MaLR -320 88 30 3 959 783 212 141 5 chr11 49021440 49021625 -72822231 + B3 SINE B2 1 210 -6 3 959 25 31 0 0 chr11 49021776 49021808 -72822048 + AT_rich Low_complexity Low_complexity 1 32 0 3 959 361 294 43 11 chr11 49021808 49021901 -72821955 - RSINE1 SINE B4 0 165 70 3 959 821 170 50 0 chr11 49022072 49022213 -72821643 - B1_Mur2 SINE Alu -1 148 1 3 959 339 342 136 38 chr11 49022252 49022672 -72821184 - L1MC4 LINE L1 -423 7619 7159 4 959 366 80 0 0 chr11 49023263 49023313 -72820543 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 959 303 319 67 40 chr11 49023383 49023608 -72820248 - L1MC4 LINE L1 -2303 5579 5349 4 959 24 32 0 0 chr11 49023876 49023907 -72819949 + AT_rich Low_complexity Low_complexity 1 31 0 4 959 380 297 140 101 chr11 49025725 49026187 -72817669 - L1M5 LINE L1 -1034 5112 4628 4 959 367 263 168 12 chr11 49026986 49027159 -72816697 - MIR SINE MIR 0 262 63 4 959 1058 308 68 12 chr11 49027172 49027497 -72816359 - MER2 DNA MER2_type -1 344 2 4 959 408 330 0 9 chr11 49027543 49027653 -72816203 - PB1D7 SINE Alu -11 109 1 4 959 961 202 5 25 chr11 49028215 49028413 -72815443 + B3 SINE B2 2 195 -21 4 959 419 301 21 24 chr11 49029079 49029981 -72813875 + MMSAT4 Satellite Satellite 1 899 0 4 959 400 292 39 39 chr11 49030004 49030322 -72813534 + MMSAT4 Satellite Satellite 1 318 0 4 959 260 329 22 22 chr11 49030356 49030574 -72813282 + MMSAT4 Satellite Satellite 1 218 -1 4 959 316 298 15 15 chr11 49030776 49030909 -72812947 + MMSAT4 Satellite Satellite 35 167 -1 4 959 235 318 30 23 chr11 49031021 49031153 -72812703 + MMSAT4 Satellite Satellite 31 163 -5 5 959 252 303 0 6 chr11 49032966 49033048 -72810808 - L2a LINE L2 -5 3421 3291 5 959 240 268 0 0 chr11 49033593 49033664 -72810192 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 5 959 510 298 114 47 chr11 49034406 49034660 -72809196 - MLT1A0 LTR MaLR 0 365 95 5 959 303 247 12 47 chr11 49034651 49034736 -72809120 + B3 SINE B2 58 139 -77 5 959 235 298 13 24 chr11 49035123 49035218 -72808638 - B1_Mus2 SINE Alu -52 95 1 5 959 234 254 149 58 chr11 49035218 49035260 -72808596 - MT2B2 LTR ERVL -413 171 119 5 959 910 144 13 27 chr11 49036075 49036225 -72807631 + B1_Mur4 SINE Alu 3 150 0 5 959 3603 84 94 2 chr11 49036488 49036976 -72806880 - Lx3_Mus LINE L1 0 7009 6477 5 959 214 94 0 30 chr11 49037571 49037604 -72806252 + MIRm SINE MIR 124 155 -121 5 959 219 339 0 0 chr11 49037642 49037707 -72806149 + RSINE1 SINE B4 3 67 -98 6 959 426 192 15 36 chr11 49037718 49037823 -72806033 - RSINE1 SINE B4 -176 116 9 6 959 489 246 47 68 chr11 49037836 49037984 -72805872 - B1F2 SINE Alu 0 149 5 6 959 324 294 101 30 chr11 49038426 49038594 -72805262 + L1M5 LINE L1 3130 3309 -2837 6 959 349 319 71 0 chr11 49038655 49038824 -72805032 - L1MEg LINE L1 -3336 2810 2630 6 959 374 270 112 19 chr11 49038954 49039169 -72804687 - L1MEg LINE L1 -3764 2382 2148 6 959 182 62 0 30 chr11 49039203 49039236 -72804620 + (TAAAAA)n Simple_repeat Simple_repeat 5 36 0 6 959 285 337 54 0 chr11 49039402 49039494 -72804362 - PB1D10 SINE Alu -6 111 15 6 959 22 35 0 0 chr11 49039576 49039605 -72804251 + AT_rich Low_complexity Low_complexity 1 29 0 6 959 7752 86 23 36 chr11 49039610 49040697 -72803159 - Lx3A LINE L1 -1 6980 5908 6 959 182 65 65 0 chr11 49040697 49040728 -72803128 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 6 959 916 50 0 59 chr11 49040887 49041056 -72802800 + (TTCC)n Simple_repeat Simple_repeat 4 162 0 7 959 486 0 0 0 chr11 49041082 49041136 -72802720 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 7 959 455 0 0 18 chr11 49041161 49041217 -72802639 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 7 959 622 86 0 98 chr11 49041297 49041490 -72802366 + CT-rich Low_complexity Low_complexity 4 177 0 7 959 638 64 15 53 chr11 49041564 49041696 -72802160 + (TTCC)n Simple_repeat Simple_repeat 4 130 0 7 959 486 0 0 0 chr11 49041722 49041776 -72802080 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 7 959 983 49 0 53 chr11 49041802 49041973 -72801883 + (TTCC)n Simple_repeat Simple_repeat 4 165 0 7 959 455 0 0 18 chr11 49041998 49042054 -72801802 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 7 959 636 94 22 66 chr11 49042080 49042262 -72801594 + CT-rich Low_complexity Low_complexity 4 177 0 7 959 450 0 0 0 chr11 49042288 49042338 -72801518 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 7 959 947 51 0 54 chr11 49042364 49042531 -72801325 + (TTCC)n Simple_repeat Simple_repeat 4 161 0 7 959 270 0 0 0 chr11 49042602 49042632 -72801224 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 7 959 711 69 15 44 chr11 49042658 49042795 -72801061 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 7 959 305 324 145 5 chr11 49042894 49043080 -72800776 - L1MEg LINE L1 -5153 1089 878 6 959 1009 279 82 44 chr11 49043100 49043370 -72800486 - B4 SINE B4 -10 282 3 7 959 756 239 31 85 chr11 49043499 49043759 -72800097 - RMER16 LTR ERVK 0 533 288 7 959 274 259 194 29 chr11 49043764 49043779 -72800077 - RMER16 LTR ERVK -158 375 361 7 959 3501 40 2 2 chr11 49043779 49044175 -72799681 - MTA_Mm LTR MaLR 0 396 1 7 959 274 247 107 39 chr11 49044175 49044344 -72799512 - RMER16 LTR ERVK -173 360 214 7 959 773 236 0 34 chr11 49044698 49044847 -72799009 + B1_Mur2 SINE Alu 1 144 -5 8 959 405 39 0 0 chr11 49045287 49045338 -72798518 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 959 657 358 116 15 chr11 49046059 49046456 -72797400 - LTR86A1 LTR ERVL 0 513 77 8 959 399 266 32 21 chr11 49046923 49047069 -72796787 - MLT1D LTR MaLR -2 503 317 8 959 244 281 35 88 chr11 49047293 49047406 -72796450 + MLT1J2 LTR MaLR 342 448 0 8 959 251 0 0 56 chr11 49047630 49047666 -72796190 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 959 1198 64 7 0 chr11 49047669 49047809 -72796047 - B1_Mus2 SINE Alu -6 141 1 8 959 462 281 92 18 chr11 49048023 49048251 -72795605 - L1MD2 LINE L1 -17 6342 6098 8 959 309 290 103 93 chr11 49048668 49048862 -72794994 + MLT1H LTR MaLR 94 289 -260 8 959 21 0 0 0 chr11 49048927 49048948 -72794908 + AT_rich Low_complexity Low_complexity 1 21 0 8 959 518 300 66 7 chr11 49050120 49050271 -72793585 - RSINE1 SINE B4 -2 163 4 9 959 226 362 38 32 chr11 49050677 49050834 -72793022 - LTR16D LTR ERVL -14 637 480 9 959 1129 178 214 4 chr11 49051154 49051425 -72792431 - MTD LTR MaLR 0 419 92 9 959 1178 250 31 50 chr11 49051628 49052239 -72791617 - L1_Mur3 LINE L1 -4446 1434 840 9 959 315 0 0 0 chr11 49052842 49052877 -72790979 + (T)n Simple_repeat Simple_repeat 1 35 0 9 959 288 268 12 0 chr11 49052918 49053000 -72790856 - L2 LINE L2 -1034 2385 2303 9 959 465 262 113 18 chr11 49053004 49053247 -72790609 + L1MB2 LINE L1 5911 6178 -2 9 959 1217 193 28 12 chr11 49053255 49053507 -72790349 - RLTR22_Mur LTR ERVK 0 1848 1593 9 959 3701 194 103 12 chr11 49053687 49054587 -72789269 - RLTR22_Mur LTR ERVK -866 982 1 9 959 1265 68 0 0 chr11 49054916 49055063 -72788793 + B1_Mus2 SINE Alu 1 147 0 9 959 216 327 113 19 chr11 49056025 49056036 -72787820 + ID_B1 SINE B4 73 93 -131 9 959 497 225 135 0 chr11 49056036 49056147 -72787709 + B1_Mur3 SINE Alu 2 127 -22 1 959 440 291 54 7 chr11 49056227 49056376 -72787480 - MIR SINE MIR -45 217 62 1 959 1198 61 0 13 chr11 49056483 49056632 -72787224 - B1_Mus1 SINE Alu 0 148 2 1 959 633 265 75 15 chr11 49056653 49056852 -72787004 - B3 SINE B2 -3 213 3 1 959 405 0 0 0 chr11 49058045 49058090 -72785766 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 959 360 0 0 0 chr11 49063430 49063470 -72780386 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 959 23 0 0 0 chr11 49064316 49064339 -72779517 + GC_rich Low_complexity Low_complexity 1 23 0 1 959 213 39 0 0 chr11 49064474 49064500 -72779356 + (CAGGG)n Simple_repeat Simple_repeat 5 30 0 1 959 327 260 56 28 chr11 49065646 49065753 -72778103 + PB1D10 SINE Alu 1 110 -7 1 959 884 156 7 20 chr11 49066091 49066102 -72777754 - B1_Mur3 SINE Alu 0 149 140 1 959 348 24 0 0 chr11 49066102 49066143 -72777713 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 959 884 156 7 20 chr11 49066143 49066281 -72777575 - B1_Mur3 SINE Alu -10 139 2 1 959 953 216 52 0 chr11 49066423 49066617 -72777239 - B3 SINE B2 -11 205 2 1 959 591 312 154 51 chr11 49066713 49067044 -72776812 + MLT1G3 LTR MaLR 208 572 -23 1 959 515 224 10 183 chr11 49068290 49068396 -72775460 + Lx8 LINE L1 7156 7242 -231 1 959 2108 176 26 36 chr11 49068396 49068815 -72775041 + Lx5 LINE L1 6633 7047 -3 1 959 515 224 10 183 chr11 49068815 49068905 -72774951 + Lx8 LINE L1 7243 7318 -155 1 959 201 163 0 0 chr11 49068936 49068985 -72774871 + CT-rich Low_complexity Low_complexity 2 50 0 1 959 337 284 90 69 chr11 49069077 49069266 -72774590 - MER46C DNA MER2_type -137 201 9 1 959 378 287 76 15 chr11 49069477 49069608 -72774248 - MIR SINE MIR -12 250 112 1 959 35 0 0 0 chr11 49069661 49069696 -72774160 + AT_rich Low_complexity Low_complexity 1 35 0 1 959 313 241 148 54 chr11 49070978 49071127 -72772729 - L1MC4 LINE L1 -89 7953 7791 1 959 914 223 68 19 chr11 49071220 49071426 -72772430 - B3 SINE B2 0 216 1 1 959 297 0 0 0 chr11 49071509 49071542 -72772314 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 959 420 191 0 0 chr11 49071571 49071665 -72772191 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 959 339 244 84 0 chr11 49071799 49071918 -72771938 - L1MC LINE L1 -2403 5479 5351 1 959 23 0 0 0 chr11 49071946 49071969 -72771887 + AT_rich Low_complexity Low_complexity 1 23 0 1 959 186 43 0 0 chr11 49072500 49072523 -72771333 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 959 674 143 0 37 chr11 49072532 49072641 -72771215 - B1_Mur4 SINE Alu 0 150 46 1 959 318 192 0 76 chr11 49072570 49072649 -72771207 - RLTR25A LTR ERVK -516 587 515 1 959 651 172 6 185 chr11 49073155 49073333 -72770523 - B1_Mus2 SINE Alu 0 147 2 1 959 467 234 41 7 chr11 49073415 49073561 -72770295 - L1MA5A LINE L1 -462 5835 5685 1 959 820 238 65 79 chr11 49077077 49077369 -72766487 - B4 SINE B4 0 292 5 1 959 225 0 0 0 chr11 49077374 49077399 -72766457 + (T)n Simple_repeat Simple_repeat 1 25 0 1 959 1921 132 36 27 chr11 49078572 49078908 -72764948 - RLTR15 LTR ERVK -15 344 6 1 959 428 164 351 13 chr11 49079147 49079301 -72764555 - Lx5 LINE L1 -7 7043 6838 1 959 525 247 103 82 chr11 49079950 49080144 -72763712 + B3A SINE B2 1 198 0 1 959 258 328 123 53 chr11 49080150 49080294 -72763562 - MLT1J LTR MaLR -92 420 274 1 959 453 50 0 0 chr11 49080294 49080354 -72763502 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 959 258 328 123 53 chr11 49080354 49080396 -72763460 - MLT1J LTR MaLR -239 273 221 1 959 360 263 67 95 chr11 49080941 49081151 -72762705 - MTEb LTR MaLR 0 379 176 1 959 830 146 40 0 chr11 49081302 49081453 -72762403 - URR1A DNA MER1_type 0 226 70 1 959 338 233 58 70 chr11 49081303 49081474 -72762382 + CYRA11_Mm Unknown Y-chromosome 172 340 -277 1 959 259 286 91 0 chr11 49081475 49081552 -72762304 + MLT1H1 LTR MaLR 188 271 -284 1 959 2469 36 13 3 chr11 49082362 49082664 -72761192 - L1Md_F3 LINE L1 -14 6570 6266 1 959 3668 35 0 0 chr11 49082664 49083087 -72760769 + L1_Mm LINE L1 5449 5871 -12 1 959 209 189 0 0 chr11 49083167 49083204 -72760652 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 959 1178 120 16 11 chr11 49083214 49083399 -72760457 + URR1A DNA MER1_type 41 226 0 1 959 846 317 117 32 chr11 49083465 49083831 -72760025 - L1MA5 LINE L1 -1540 5933 5586 1 959 1295 89 45 0 chr11 49083831 49084010 -72759846 - B2_Mm2 SINE B2 -5 190 4 1 959 846 303 110 41 chr11 49084010 49084289 -72759567 - L1MA5 LINE L1 -715 5585 5240 1 959 4812 29 2 0 chr11 49084396 49084949 -72758907 - L1Md_F2 LINE L1 -3 6579 6026 1 959 713 224 64 12 chr11 49086426 49086598 -72757258 + B3A SINE B2 1 181 -17 1 959 630 160 56 9 chr11 49086781 49086888 -72756968 + B1_Mus1 SINE Alu 10 121 -27 1 959 192 77 0 0 chr11 49086945 49086971 -72756885 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 959 239 154 113 19 chr11 49087173 49087226 -72756630 + PB1D9 SINE Alu 2 59 -61 1 959 222 226 0 70 chr11 49087179 49087236 -72756620 + B4A SINE B4 92 144 -148 1 959 573 0 0 93 chr11 49087239 49087368 -72756488 + (GGA)n Simple_repeat Simple_repeat 3 119 0 1 959 508 190 59 10 chr11 49087373 49087474 -72756382 + B1F2 SINE Alu 41 146 -3 1 959 1148 119 119 5 chr11 49088488 49088690 -72755166 + URR1B DNA MER1_type 1 225 0 1 959 872 170 0 7 chr11 49089708 49089856 -72754000 + B1_Mus1 SINE Alu 2 148 0 1 959 319 156 368 0 chr11 49089909 49089996 -72753860 - RSINE1 SINE B4 -32 133 15 1 959 2142 88 36 7 chr11 49090007 49090315 -72753541 + IAPLTR2b LTR ERVK 1 317 -10 1 959 182 211 0 13 chr11 49090417 49090454 -72753402 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 959 411 21 0 0 chr11 49090454 49090502 -72753354 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 959 182 211 0 13 chr11 49090502 49090541 -72753315 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 959 715 303 71 14 chr11 49090582 49090876 -72752980 + L1MD2 LINE L1 25 335 -6212 1 959 593 281 82 25 chr11 49091081 49091398 -72752458 + L1M3 LINE L1 4343 4677 -1463 1 959 706 191 7 45 chr11 49092407 49092561 -72751295 - B1_Mus1 SINE Alu 0 148 1 1 959 364 308 10 0 chr11 49094776 49094880 -72748976 + RSINE1 SINE B4 4 108 -57 1 959 414 0 0 0 chr11 49094887 49094933 -72748923 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 959 244 333 91 40 chr11 49095306 49095481 -72748375 - Lx8 LINE L1 -9 7464 7281 1 959 531 296 34 74 chr11 49096415 49096728 -72747128 - RMER15 LTR ERVL -155 420 6 1 959 1803 312 79 39 chr11 49096730 49096986 -72746870 - RMER15-int LTR ERVL -22 4977 4730 1 959 378 42 0 0 chr11 49096986 49097034 -72746822 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 959 1803 312 79 39 chr11 49097034 49097565 -72746291 - RMER15-int LTR ERVL -270 4729 4159 1 959 267 343 55 9 chr11 49097709 49097818 -72746038 - RMER15-int LTR ERVL -2776 2223 2110 1 959 26 30 0 0 chr11 49098250 49098283 -72745573 + AT_rich Low_complexity Low_complexity 1 33 0 1 959 222 197 33 0 chr11 49099768 49099829 -72744027 + T-rich Low_complexity Low_complexity 5 67 0 1 959 270 250 27 14 chr11 49099925 49099998 -72743858 + ID4 SINE ID 6 79 -4 1 959 243 0 0 0 chr11 49100397 49100424 -72743432 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 959 1726 48 0 0 chr11 49101232 49101441 -72742415 - L1Md_T LINE L1 0 6582 6374 1 959 875 154 103 15 chr11 49101599 49101803 -72742053 + Lx9 LINE L1 7416 7637 -7 1 959 485 283 116 10 chr11 49102900 49103193 -72740663 - L1M3 LINE L1 -1153 4987 4664 1 959 432 0 0 0 chr11 49103497 49103545 -72740311 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 959 1360 201 74 145 chr11 49103818 49104120 -72739736 - Lx7 LINE L1 -15 7681 7382 1 959 564 15 0 0 chr11 49104120 49104185 -72739671 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1 959 1360 201 74 145 chr11 49104185 49104406 -72739450 - Lx7 LINE L1 -315 7381 7196 1 959 762 256 44 10 chr11 49104749 49104954 -72738902 + B3 SINE B2 1 212 -4 1 959 432 104 0 0 chr11 49105120 49105187 -72738669 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 1 959 1175 106 17 6 chr11 49105790 49105970 -72737886 - B2_Mm1t SINE B2 -8 185 4 1 959 426 279 10 0 chr11 49107916 49108020 -72735836 + RSINE1 SINE B4 4 108 -57 1 959 288 0 0 0 chr11 49108027 49108059 -72735797 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 959 372 357 62 43 chr11 49109512 49109673 -72734183 - RMER15 LTR ERVL -162 413 250 1 959 370 205 32 97 chr11 49109673 49109797 -72734059 - RMER15 LTR ERVL -445 130 15 1 959 658 318 22 51 chr11 49109816 49110051 -72733805 - RMER15-int LTR ERVL -32 4967 4743 1 959 1122 95 0 0 chr11 49110051 49110230 -72733626 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 959 658 318 22 51 chr11 49110230 49110306 -72733550 - RMER15-int LTR ERVL -257 4742 4666 1 959 26328 121 30 9 chr11 49110384 49116436 -72727420 - L1_Mus3 LINE L1 0 6638 423 1 959 1082 307 82 18 chr11 49116437 49116928 -72726928 - RMER15-int LTR ERVL -317 4682 4161 1 959 254 284 14 0 chr11 49119374 49119448 -72724408 + ID4 SINE ID 5 79 -4 1 959 801 185 65 80 chr11 49120768 49121044 -72722812 + Lx9 LINE L1 7372 7643 -1 1 959 3168 86 31 33 chr11 49121846 49122329 -72721527 - RLTR45 LTR ERVK 0 482 1 1 959 213 261 0 0 chr11 49122409 49122455 -72721401 + C-rich Low_complexity Low_complexity 3 48 0 1 959 418 277 115 10 chr11 49122730 49123025 -72720831 - L1M3 LINE L1 -1153 4987 4662 1 959 853 239 25 133 chr11 49123636 49123756 -72720100 - Lx7 LINE L1 -16 7680 7561 1 959 1025 109 0 0 chr11 49123756 49123894 -72719962 + B1_Mus1 SINE Alu 2 139 -9 1 959 853 239 25 133 chr11 49123894 49124135 -72719721 - Lx7 LINE L1 -136 7560 7358 1 959 655 250 27 5 chr11 49124188 49124373 -72719483 - Lx7 LINE L1 -335 7361 7173 1 959 1002 192 38 19 chr11 49124707 49124919 -72718937 + B3 SINE B2 1 216 0 1 959 330 175 0 0 chr11 49125081 49125161 -72718695 + (TTCA)n Simple_repeat Simple_repeat 1 80 0 1 959 243 146 0 0 chr11 49125670 49125725 -72718131 + (T)n Simple_repeat Simple_repeat 1 55 0 1 959 1202 48 7 0 chr11 49125726 49125872 -72717984 - B1_Mm SINE Alu 0 147 1 1 959 531 157 43 0 chr11 49125873 49125988 -72717868 - MYSERV6-int LTR ERVK -4097 4862 4743 1 959 11004 78 12 9 chr11 49125992 49126419 -72717437 - L1VL4 LINE L1 -1030 2529 2103 2 959 207 0 0 0 chr11 49126419 49126442 -72717414 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 959 11004 84 15 6 chr11 49126442 49128318 -72715538 - L1VL4 LINE L1 -1457 2102 206 2 959 399 89 0 0 chr11 49128519 49128575 -72715281 + (TTA)n Simple_repeat Simple_repeat 2 57 0 2 959 261 0 0 0 chr11 49129303 49129332 -72714524 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 959 23 0 0 0 chr11 49129332 49129355 -72714501 + AT_rich Low_complexity Low_complexity 1 23 0 2 959 7432 80 12 2 chr11 49129355 49130469 -72713387 - L1_Mus3 LINE L1 -20 6618 5496 2 959 350 327 10 0 chr11 49132163 49132267 -72711589 + RSINE1 SINE B4 4 108 -57 2 959 264 59 0 0 chr11 49132274 49132308 -72711548 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 959 23 33 0 0 chr11 49133266 49133296 -72710560 + AT_rich Low_complexity Low_complexity 1 30 0 2 959 422 304 190 13 chr11 49133742 49133979 -72709877 - RMER15 LTR ERVL -16 559 281 2 959 309 272 32 81 chr11 49134019 49134143 -72709713 - RMER15 LTR ERVL -445 130 13 2 959 389 324 19 105 chr11 49134152 49134418 -72709438 - RMER15-int LTR ERVL -22 4977 4735 2 959 293 281 24 0 chr11 49134451 49134533 -72709323 - RMER15-int LTR ERVL -269 4730 4647 2 959 938 325 28 23 chr11 49134596 49134986 -72708870 - RMER15-int LTR ERVL -447 4552 4161 2 959 322 286 122 20 chr11 49137156 49137452 -72706404 - L1M2 LINE L1 -1153 4990 4665 2 959 1051 200 58 62 chr11 49138043 49138368 -72705488 - Lx7 LINE L1 -16 7680 7357 2 959 23 0 0 0 chr11 49138392 49138415 -72705441 + AT_rich Low_complexity Low_complexity 1 23 0 2 959 342 253 0 0 chr11 49138421 49138500 -72705356 - Lx7 LINE L1 -337 7359 7281 2 959 967 259 5 10 chr11 49138880 49139079 -72704777 + B3 SINE B2 16 213 -3 2 959 288 189 0 0 chr11 49139249 49139323 -72704533 + (TTCA)n Simple_repeat Simple_repeat 1 74 0 2 959 504 0 0 0 chr11 49141852 49141908 -72701948 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 2 959 282 56 0 0 chr11 49142274 49142310 -72701546 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2 959 786 232 0 0 chr11 49142570 49142712 -72701144 - ORR1D1 LTR MaLR -232 142 1 2 959 522 234 0 0 chr11 49143518 49143646 -72700210 + CT-rich Low_complexity Low_complexity 2 129 0 2 959 453 158 0 0 chr11 49143678 49143760 -72700096 + CT-rich Low_complexity Low_complexity 1 82 0 2 959 312 233 82 72 chr11 49143760 49143857 -72699999 - PB1D9 SINE Alu -21 129 31 2 959 852 178 188 32 chr11 49144088 49144274 -72699582 - B3 SINE B2 0 216 2 2 959 238 150 0 48 chr11 49144281 49144344 -72699512 - Lx7 LINE L1 -22 7674 7615 2 959 806 199 189 22 chr11 49144367 49144552 -72699304 - B3 SINE B2 0 216 1 2 959 243 0 0 0 chr11 49144583 49144610 -72699246 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 959 235 218 0 60 chr11 49144612 49144695 -72699161 + A-rich Low_complexity Low_complexity 3 80 0 2 959 324 64 0 0 chr11 49144709 49144756 -72699100 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 959 1727 212 36 3 chr11 49144787 49145174 -72698682 - Lx7 LINE L1 -336 7360 6961 2 959 907 28 0 0 chr11 49145595 49145704 -72698152 + L1Md_A LINE L1 5478 5586 -297 2 959 8505 28 2 0 chr11 49145704 49146698 -72697158 + L1Md_A LINE L1 5587 6582 0 2 959 1139 49 7 14 chr11 49146719 49146856 -72697000 + B1_Mus1 SINE Alu 1 138 -10 2 959 243 0 0 0 chr11 49146856 49146883 -72696973 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 959 327 146 0 0 chr11 49147583 49147638 -72696218 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 959 379 339 27 0 chr11 49148163 49148275 -72695581 + RSINE1 SINE B4 11 125 -40 2 959 450 0 0 0 chr11 49148283 49148333 -72695523 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 959 265 263 57 66 chr11 49148444 49148550 -72695306 - MER102c DNA MER1_type -102 229 125 2 959 184 250 104 0 chr11 49148963 49149011 -72694845 - MIRm SINE MIR -124 152 100 2 959 516 122 0 0 chr11 49149766 49149848 -72694008 + (GGA)n Simple_repeat Simple_repeat 1 82 0 2 959 331 318 47 8 chr11 49151287 49151414 -72692442 - MER74B LTR ERVL -438 184 53 2 960 208 317 24 12 chr11 49152624 49152707 -72691149 - L2a LINE L2 -6 3420 3337 2 960 2403 126 13 3 chr11 49155815 49156206 -72687650 - L1_Mus3 LINE L1 0 6638 6244 2 960 36224 16 2 7 chr11 49156585 49161986 -72681870 + L1Md_A LINE L1 214 5586 -297 2 960 8754 19 0 0 chr11 49161986 49163042 -72680814 + L1Md_A LINE L1 5587 6582 0 2 960 510 315 161 11 chr11 49163945 49164205 -72679651 - RMER15 LTR ERVL 0 575 277 2 960 9856 92 5 11 chr11 49164409 49166666 -72677190 + L1_Mus2 LINE L1 4324 6566 0 2 960 636 87 0 0 chr11 49166932 49167024 -72676832 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 960 716 241 64 44 chr11 49167047 49167251 -72676605 - B3 SINE B2 -7 209 2 2 960 358 363 70 27 chr11 49167474 49167848 -72676008 - L1M2 LINE L1 -783 5360 4971 2 960 237 33 0 0 chr11 49167877 49167907 -72675949 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 960 653 92 0 0 chr11 49167917 49168015 -72675841 - L1_Mm LINE L1 -1454 4429 4332 2 960 1013 223 12 8 chr11 49167991 49168016 -72675840 - Lx6 LINE L1 -1622 5838 5812 2 960 484 101 0 22 chr11 49168016 49168107 -72675749 - L1Md_F2 LINE L1 -13 6569 6481 2 960 14956 88 78 0 chr11 49168107 49170442 -72673414 - L1_Mm LINE L1 -70 5813 3298 2 960 11560 82 6 1 chr11 49170497 49171747 -72672109 + L1Md_F2 LINE L1 209 1466 -4417 2 960 3060 51 27 0 chr11 49171747 49172122 -72671734 + IAPEY_LTR LTR ERVK 1 385 0 2 960 11560 66 0 5 chr11 49172122 49173499 -72670357 + L1Md_F2 LINE L1 1467 2836 -3047 2 960 8981 14 2 1 chr11 49173492 49174587 -72669269 - L1_Mm LINE L1 -1328 4555 3460 2 960 455 52 0 0 chr11 49174587 49174645 -72669211 - L1_Mm LINE L1 -2368 3515 3458 2 960 5051 69 19 0 chr11 49174643 49175342 -72668514 + L1Md_F2 LINE L1 4721 5432 -451 2 960 6855 47 2 0 chr11 49175342 49176180 -72667676 + L1Md_F2 LINE L1 5729 6568 -14 2 960 359 21 0 20 chr11 49176186 49176235 -72667621 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 2 960 246 329 0 67 chr11 49176237 49176248 -72667608 + B4 SINE B4 81 86 -206 2 960 369 264 0 0 chr11 49176248 49176320 -72667536 + B1_Mus2 SINE Alu 2 73 -74 2 960 246 62 0 0 chr11 49176611 49176643 -72667213 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2 960 786 232 0 0 chr11 49176903 49177045 -72666811 - ORR1D1 LTR MaLR -232 142 1 2 960 508 201 0 36 chr11 49177821 49177986 -72665870 + CT-rich Low_complexity Low_complexity 1 159 0 2 960 387 92 0 0 chr11 49177986 49178051 -72665805 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 960 231 213 131 0 chr11 49178058 49178119 -72665737 - PB1D9 SINE Alu -21 99 31 2 960 231 61 0 0 chr11 49178322 49178355 -72665501 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 960 25525 19 0 0 chr11 49178392 49182236 -72661620 - L1Md_T LINE L1 0 6582 2740 2 960 652 288 35 6 chr11 49182242 49182413 -72661443 - B3 SINE B2 -14 202 27 2 960 29590 106 15 10 chr11 49182413 49188278 -72655578 - L1_Mus2 LINE L1 0 6582 673 2 960 291 140 0 20 chr11 49188292 49188343 -72655513 - B3A SINE B2 -145 53 4 2 960 740 232 5 25 chr11 49188434 49188619 -72655237 - B3 SINE B2 -14 179 6 2 960 393 22 0 0 chr11 49188698 49188744 -72655112 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 2 960 394 297 12 24 chr11 49188799 49188968 -72654888 - Lx7 LINE L1 -374 7322 7156 2 960 363 241 115 9 chr11 49188969 49189082 -72654774 + Lx7 LINE L1 7053 7177 -519 2 960 203 184 0 0 chr11 49189989 49190027 -72653829 + T-rich Low_complexity Low_complexity 1 38 0 2 960 972 101 0 28 chr11 49190042 49190185 -72653671 - B1_Mus1 SINE Alu -9 139 1 2 960 2857 196 35 101 chr11 49190204 49190987 -72652869 - Lx7 LINE L1 0 7696 6966 2 960 402 330 28 0 chr11 49192677 49192786 -72651070 + RSINE1 SINE B4 16 127 -38 2 960 396 0 0 0 chr11 49192791 49192835 -72651021 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 960 293 214 57 67 chr11 49192947 49193052 -72650804 - MER102b DNA MER1_type -82 259 156 2 960 328 194 15 0 chr11 49195004 49195071 -72648785 - B2_Mm2 SINE B2 -126 69 2 2 960 27 0 0 0 chr11 49195099 49195126 -72648730 + AT_rich Low_complexity Low_complexity 1 27 0 2 960 408 152 19 9 chr11 49195126 49195216 -72648640 - L1_Mus3 LINE L1 -3 6635 6546 2 960 3136 28 0 235 chr11 49195216 49195786 -72648070 + RLTR10C LTR ERVK 1 436 0 2 960 408 152 19 9 chr11 49195786 49195801 -72648055 - L1_Mus3 LINE L1 -93 6545 6530 2 960 298 270 0 82 chr11 49196272 49196369 -72647487 - MER20 DNA MER1_type -23 196 108 2 960 1234 148 80 5 chr11 49197456 49197680 -72646176 + L1Md_F2 LINE L1 6323 6563 -19 2 960 6795 38 0 1 chr11 49197698 49198516 -72645340 - L1Md_F2 LINE L1 -1 6581 5765 2 960 2529 61 0 0 chr11 49198516 49198842 -72645014 + L1Md_F2 LINE L1 5462 5787 -96 2 960 1237 115 5 20 chr11 49198926 49199121 -72644735 + B2_Mm2 SINE B2 1 192 -3 2 960 217 322 48 11 chr11 49199213 49199333 -72644523 - L2a LINE L2 -4 3422 3240 2 960 30007 86 12 18 chr11 49199569 49204522 -72639334 + L1Md_F2 LINE L1 373 5292 -591 2 960 3047 66 5 2 chr11 49204522 49204915 -72638941 + L1Md_F2 LINE L1 6176 6569 -13 2 960 30007 77 8 5 chr11 49204915 49205205 -72638651 + L1Md_F2 LINE L1 5293 5586 -297 2 960 7519 70 5 4 chr11 49205206 49206199 -72637657 + L1Md_F2 LINE L1 5588 6581 -1 2 960 3254 151 3 7 chr11 49206202 49206788 -72637068 + L1_Mm LINE L1 4670 5253 -630 2 960 2373 113 15 23 chr11 49206858 49207256 -72636600 - L1_Mus3 LINE L1 0 6638 6244 2 960 300 299 64 13 chr11 49208256 49208412 -72635444 - L1MA9 LINE L1 -206 6106 5943 2 960 485 322 165 11 chr11 49208413 49208674 -72635182 - RMER15 LTR ERVL 0 575 275 2 960 378 0 0 0 chr11 49209106 49209148 -72634708 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 960 764 261 24 47 chr11 49209169 49209382 -72634474 - B3 SINE B2 -7 209 2 2 960 361 345 62 23 chr11 49209605 49209991 -72633865 - L1MA9 LINE L1 -783 5357 4957 2 960 369 62 0 0 chr11 49210005 49210053 -72633803 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 960 419 209 0 0 chr11 49210092 49210159 -72633697 + B3 SINE B2 1 67 -149 2 960 7155 73 10 3 chr11 49210164 49211801 -72632055 - L1Md_F2 LINE L1 -12 6570 4919 2 960 343 229 171 0 chr11 49211801 49211906 -72631950 + B2_Mm2 SINE B2 42 164 -31 2 960 253 104 41 20 chr11 49211884 49211933 -72631923 + B3 SINE B2 161 210 -6 2 960 445 321 46 10 chr11 49211962 49212157 -72631699 + Lx9 LINE L1 7097 7298 -346 2 960 2685 204 50 38 chr11 49212155 49212920 -72630936 + L1_Mur3 LINE L1 4375 5148 -732 2 960 319 252 114 0 chr11 49212928 49213059 -72630797 + Lx6 LINE L1 7299 7444 -16 2 960 510 171 26 18 chr11 49213046 49213159 -72630697 + L1_Mur3 LINE L1 5309 5422 -458 2 960 329 328 94 53 chr11 49213189 49213262 -72630594 + L1M5 LINE L1 4022 4093 -2053 3 960 844 276 73 79 chr11 49213262 49213643 -72630213 - MTE2b LTR MaLR 0 379 1 3 960 329 328 94 53 chr11 49213643 49213814 -72630042 + L1M5 LINE L1 4094 4276 -1870 3 960 386 302 50 54 chr11 49213934 49214438 -72629418 + L1MD LINE L1 4419 4920 -1226 3 960 1144 191 29 0 chr11 49214562 49214772 -72629084 + B3 SINE B2 1 216 0 3 960 449 315 71 29 chr11 49215028 49215368 -72628488 + L1MB2 LINE L1 5815 6168 -3 3 960 5026 15 3 0 chr11 49215951 49216560 -72627296 + L1Md_T LINE L1 4976 5586 -297 3 960 8520 31 0 0 chr11 49216560 49217556 -72626300 + L1Md_T LINE L1 5587 6582 0 3 960 705 226 7 0 chr11 49217820 49217957 -72625899 - ORR1D2 LTR MaLR 0 370 233 3 960 462 226 8 24 chr11 49217970 49218097 -72625759 - ORR1D2-int LTR MaLR -163 1207 1083 3 960 1219 271 60 93 chr11 49219105 49219498 -72624358 - ORR1D2-int LTR MaLR -275 1095 716 3 960 1560 146 157 13 chr11 49219498 49219811 -72624045 + RMER6C LTR ERVK 1 358 -332 3 960 213 200 0 0 chr11 49219812 49219852 -72624004 + (CAGTT)n Simple_repeat Simple_repeat 4 43 0 3 960 229 103 160 93 chr11 49219852 49219927 -72623929 - RMER19B LTR ERVK -178 724 645 3 960 182 281 122 0 chr11 49221249 49221331 -72622525 + MIR SINE MIR 38 129 -79 3 960 882 126 0 0 chr11 49221638 49221805 -72622051 + (GA)n Simple_repeat Simple_repeat 1 167 0 3 960 2263 146 73 10 chr11 49221869 49222277 -72621579 - RMER1B Other Other -18 1048 615 3 960 1230 47 0 0 chr11 49222348 49222496 -72621360 + B1_Mus1 SINE Alu 1 148 0 3 960 486 278 170 14 chr11 49222557 49222915 -72620941 + L1MA7 LINE L1 5601 6014 -277 3 960 3023 85 2 5 chr11 49222952 49223353 -72620503 - MTB LTR MaLR 0 400 1 3 960 806 155 8 0 chr11 49223382 49223511 -72620345 - B3 SINE B2 -86 130 1 3 960 714 141 317 6 chr11 49224444 49224608 -72619248 - B3 SINE B2 0 216 2 3 960 226 180 82 0 chr11 49224626 49224687 -72619169 - L1MB3 LINE L1 -74 6109 6044 3 960 290 26 26 0 chr11 49224942 49224981 -72618875 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 3 960 295 273 54 15 chr11 49225030 49225160 -72618696 - L1MB3 LINE L1 -129 6054 5920 3 960 289 228 112 56 chr11 49225236 49225343 -72618513 + MTD LTR MaLR 1 113 -306 3 960 650 231 138 19 chr11 49225641 49225899 -72617957 + MTD LTR MaLR 105 400 -7 3 960 247 207 32 65 chr11 49225957 49226050 -72617806 - L1MB3 LINE L1 -842 5298 5209 3 960 225 175 0 0 chr11 49226055 49226095 -72617761 + ID4 SINE ID 6 45 -38 3 960 743 266 70 33 chr11 49226106 49226405 -72617451 - L1_Mur3 LINE L1 -2047 3833 3524 3 960 917 244 135 0 chr11 49226413 49226642 -72617214 + B4A SINE B4 1 260 -32 3 960 425 298 69 7 chr11 49226656 49226947 -72616909 - L1_Mur3 LINE L1 -2389 3491 3183 3 960 6272 62 19 2 chr11 49226947 49227738 -72616118 + RLTR13C2 LTR ERVK 1 804 -4 3 960 746 215 35 0 chr11 49227771 49227915 -72615941 - B1_Mur2 SINE Alu 0 149 1 3 960 22 35 0 0 chr11 49227919 49227948 -72615908 + AT_rich Low_complexity Low_complexity 1 29 0 3 960 202 271 0 17 chr11 49227965 49228025 -72615831 + C-rich Low_complexity Low_complexity 5 63 0 3 960 2538 83 0 0 chr11 49228055 49228382 -72615474 - ORR1A2 LTR MaLR 0 327 1 3 960 797 278 91 77 chr11 49228383 49228826 -72615030 - L1MB3 LINE L1 -2964 3179 2726 3 960 682 266 76 0 chr11 49228826 49228869 -72614987 - B3 SINE B2 -18 198 150 3 960 222 91 0 0 chr11 49228869 49228902 -72614954 + (TTAGGG)n Simple_repeat Simple_repeat 2 34 0 3 960 682 266 76 0 chr11 49228902 49229042 -72614814 - B3 SINE B2 -67 149 2 3 960 797 278 91 77 chr11 49229042 49229455 -72614401 - L1MB3 LINE L1 -3418 2725 2311 3 960 1399 115 8 21 chr11 49230303 49230543 -72613313 + L1VL1 LINE L1 1 237 -6185 3 960 22953 65 5 2 chr11 49230544 49233715 -72610141 + L1Md_F2 LINE L1 2408 5586 -297 3 960 7823 60 3 4 chr11 49233715 49234709 -72609147 + L1Md_F2 LINE L1 5587 6579 -3 3 960 540 217 110 10 chr11 49234897 49235035 -72608821 - MTE2b LTR MaLR 0 379 231 3 960 215 61 30 0 chr11 49235035 49235068 -72608788 + (TATAA)n Simple_repeat Simple_repeat 4 37 0 3 960 367 243 48 108 chr11 49235068 49235095 -72608761 - MTE2b LTR MaLR -131 239 215 3 960 29 0 0 0 chr11 49235191 49235220 -72608636 + AT_rich Low_complexity Low_complexity 1 29 0 3 960 324 341 0 0 chr11 49235223 49235311 -72608545 - MTE2b LTR MaLR -115 264 177 3 960 235 176 39 19 chr11 49235625 49235677 -72608179 + L2c LINE L2 3266 3318 -69 3 960 200 309 72 31 chr11 49235713 49235810 -72608046 - MIRb SINE MIR -55 213 113 3 960 31 0 0 0 chr11 49235940 49235971 -72607885 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 3543 164 69 6 chr11 49239363 49240014 -72603842 + RLTR17 LTR ERVK 1 692 0 3 960 719 268 108 35 chr11 49240635 49241010 -72602846 + RLTR12B LTR ERVK 5 452 -76 3 960 195 317 24 12 chr11 49242043 49242126 -72601730 - L2a LINE L2 0 3426 3343 3 960 519 95 0 0 chr11 49245609 49245683 -72598173 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 3 960 24 32 0 0 chr11 49245975 49246006 -72597850 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 23 0 0 0 chr11 49246106 49246129 -72597727 + AT_rich Low_complexity Low_complexity 1 23 0 3 960 194 0 39 0 chr11 49246435 49246461 -72597395 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 960 439 234 39 0 chr11 49246587 49246754 -72597102 - L1MA6 LINE L1 -32 6265 6092 3 960 314 65 65 0 chr11 49246918 49246980 -72596876 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3 960 1853 208 41 184 chr11 49247041 49247754 -72596102 - RMER19C LTR ERVK 0 611 1 3 960 221 167 0 0 chr11 49247760 49247796 -72596060 + PB1D9 SINE Alu 2 37 -83 3 960 246 143 0 0 chr11 49247764 49247799 -72596057 + B1_Mus1 SINE Alu 7 41 -107 3 960 359 281 105 12 chr11 49247825 49247987 -72595869 + L1M5 LINE L1 5294 5470 -654 3 960 1396 272 75 16 chr11 49248395 49248970 -72594886 - L1MA6 LINE L1 -279 6021 5413 3 960 235 214 0 0 chr11 49249068 49249124 -72594732 + L1MB8 LINE L1 6071 6126 -52 3 960 1697 184 141 2 chr11 49249197 49249595 -72594261 + RMER1B Other Other 603 1055 -11 3 960 560 279 34 54 chr11 49250995 49251008 -72592848 - CYRA11_Mm Unknown Y-chromosome -223 394 282 3 960 1342 153 23 0 chr11 49251008 49251223 -72592633 + URR1B DNA MER1_type 6 225 0 3 960 560 279 34 54 chr11 49251223 49251234 -72592622 - CYRA11_Mm Unknown Y-chromosome -223 281 161 3 960 22 0 0 0 chr11 49251560 49251582 -72592274 + AT_rich Low_complexity Low_complexity 1 22 0 3 960 369 0 0 0 chr11 49253867 49253908 -72589948 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 960 754 268 0 27 chr11 49254463 49254651 -72589205 + B3A SINE B2 1 183 -15 3 960 456 210 0 0 chr11 49254653 49254815 -72589041 + (TA)n Simple_repeat Simple_repeat 1 162 0 3 960 516 283 56 61 chr11 49255271 49255467 -72588389 - B3A SINE B2 -3 195 1 3 960 1942 191 104 23 chr11 49255882 49256412 -72587444 + Lx9 LINE L1 7071 7643 -1 3 960 230 206 31 16 chr11 49256691 49256755 -72587101 - MER67C LTR ERV1 -330 381 317 3 960 267 276 79 0 chr11 49256930 49257006 -72586850 - BC1_Mm scRNA scRNA -70 82 1 3 960 1817 109 31 22 chr11 49258684 49259003 -72584853 + RLTRETN_Mm LTR ERVK 1 322 0 3 960 17422 151 27 20 chr11 49259003 49265841 -72578015 + ETnERV2-int LTR ERVK 1 7299 -107 3 960 1828 106 31 22 chr11 49265841 49266160 -72577696 + RLTRETN_Mm LTR ERVK 1 322 0 3 960 766 291 144 43 chr11 49266406 49266761 -72577095 - MTEa LTR MaLR 0 359 1 3 960 732 315 0 18 chr11 49266770 49266990 -72576866 - MTEa-int LTR MaLR -12 1568 1353 3 960 930 128 0 34 chr11 49267005 49267151 -72576705 + B1_Mur3 SINE Alu 9 149 0 3 960 609 310 15 20 chr11 49267155 49267356 -72576500 - MTEa-int LTR MaLR -222 1358 1159 3 960 294 323 85 23 chr11 49267503 49267633 -72576223 - MIRb SINE MIR -50 218 81 3 960 33 66 0 0 chr11 49267682 49267743 -72576113 + AT_rich Low_complexity Low_complexity 1 61 0 3 960 180 0 0 0 chr11 49267828 49267848 -72576008 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 960 1647 221 68 18 chr11 49267849 49268232 -72575624 + MTD LTR MaLR 18 419 0 3 960 344 286 121 0 chr11 49269928 49270019 -72573837 + B1F SINE Alu 1 102 -47 3 960 585 129 0 0 chr11 49272571 49272664 -72571192 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 3 960 333 0 0 0 chr11 49272766 49272803 -72571053 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 960 2186 149 34 93 chr11 49274662 49275157 -72568699 + RMER4A LTR ERVK 1 466 0 3 960 359 330 87 74 chr11 49275393 49275772 -72568084 - MER34A LTR ERV1 -32 539 156 3 960 399 294 21 11 chr11 49275901 49276111 -72567745 - L1MA6 LINE L1 -39 6261 6051 3 960 1167 308 83 14 chr11 49276595 49277174 -72566682 - Lx8 LINE L1 0 7473 6855 3 960 398 228 14 62 chr11 49277183 49277328 -72566528 - Lx7 LINE L1 0 7696 7559 3 960 351 0 0 0 chr11 49277353 49277392 -72566464 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 960 26 0 0 0 chr11 49277444 49277470 -72566386 + AT_rich Low_complexity Low_complexity 1 26 0 3 960 484 227 27 0 chr11 49277474 49277584 -72566272 - Lx7 LINE L1 -377 7319 7207 3 961 233 286 14 0 chr11 49285764 49285834 -72558022 - ID4_ SINE ID -10 73 3 3 961 2448 160 29 10 chr11 49286399 49287040 -72556816 + L1VL4 LINE L1 784 1435 -2477 3 961 390 226 0 38 chr11 49287045 49287151 -72556705 + L1Md_F LINE L1 228 329 -6190 3 961 543 200 0 32 chr11 49287147 49287271 -72556585 + L1Md_F2 LINE L1 306 425 -6191 3 961 32200 56 5 9 chr11 49287269 49291959 -72551897 + L1Md_F2 LINE L1 928 5586 -297 3 961 7935 49 2 7 chr11 49291959 49292958 -72550898 + L1Md_F2 LINE L1 5587 6580 -2 3 961 8372 121 11 4 chr11 49292958 49294403 -72549453 + L1VL4 LINE L1 1429 2883 -1029 3 961 1952 356 39 22 chr11 49294403 49295901 -72547955 + MuLV-int LTR ERV1 2926 4448 -3158 3 961 761 106 0 0 chr11 49295901 49296005 -72547851 + MTB_Mm LTR MaLR 1 104 -303 3 961 3202 149 56 20 chr11 49295998 49296654 -72547202 + MTB-int LTR MaLR 507 1258 0 3 961 3148 55 5 5 chr11 49296654 49297054 -72546802 + MTB LTR MaLR 1 400 0 3 961 1069 258 79 3 chr11 49297485 49297827 -72546029 + MuLV-int LTR ERV1 4955 5322 -2456 3 961 328 319 17 0 chr11 49298065 49298181 -72545675 + MuLV-int LTR ERV1 5493 5610 -1991 3 961 3082 76 0 5 chr11 49298241 49298639 -72545217 + MTA_Mm LTR MaLR 1 396 0 3 961 626 330 10 10 chr11 49299040 49299349 -72544507 + RLTR6-int LTR ERV1 7342 7650 -128 3 961 2145 151 79 59 chr11 49300102 49300631 -72543225 + L1_Mur3 LINE L1 1620 2159 -3721 3 961 975 333 28 6 chr11 49300639 49301134 -72542722 - Lx8 LINE L1 -116 7357 6852 3 961 318 256 17 8 chr11 49301140 49301258 -72542598 - Lx7 LINE L1 0 7696 7578 3 961 321 68 0 0 chr11 49301314 49301358 -72542498 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 961 611 203 153 46 chr11 49301364 49301416 -72542440 - Lx7 LINE L1 -273 7423 7364 3 961 216 0 0 0 chr11 49301416 49301440 -72542416 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 3 961 234 0 0 0 chr11 49301441 49301467 -72542389 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 961 611 203 153 46 chr11 49301467 49301608 -72542248 - Lx7 LINE L1 -333 7363 7207 3 961 282 29 0 0 chr11 49302467 49302502 -72541354 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 961 196 366 21 41 chr11 49306199 49306296 -72537560 - L2b LINE L2 0 3375 3281 3 961 360 43 0 0 chr11 49307406 49307452 -72536404 + (T)n Simple_repeat Simple_repeat 1 46 0 3 961 1090 89 7 0 chr11 49307535 49307681 -72536175 - B1_Mus1 SINE Alu 0 148 2 3 961 1294 13 0 0 chr11 49309914 49310066 -72533790 + L1Md_A LINE L1 5435 5586 -297 4 961 8821 15 0 0 chr11 49310066 49311061 -72532795 + L1Md_A LINE L1 5587 6581 -1 4 961 227 314 14 0 chr11 49311322 49311392 -72532464 - ID4_ SINE ID -10 73 3 4 961 256 234 31 21 chr11 49312054 49312150 -72531706 + (TA)n Simple_repeat Simple_repeat 2 98 0 4 961 225 226 0 0 chr11 49312181 49312234 -72531622 + (CATA)n Simple_repeat Simple_repeat 4 56 0 4 961 31539 65 1 1 chr11 49312313 49317529 -72526327 + L1Md_F2 LINE L1 371 5586 -297 4 961 8401 34 0 0 chr11 49317529 49318511 -72525345 + L1Md_F2 LINE L1 5587 6568 -14 4 961 1153 255 115 26 chr11 49318519 49318942 -72524914 + L1M2 LINE L1 3223 3688 -2455 4 961 333 0 0 0 chr11 49318942 49318979 -72524877 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 961 1153 255 115 26 chr11 49318979 49319171 -72524685 + L1M2 LINE L1 3689 3892 -2251 4 961 952 256 0 0 chr11 49319177 49319404 -72524452 + Lx6 LINE L1 7218 7444 -16 4 961 30 0 0 0 chr11 49319405 49319435 -72524421 + AT_rich Low_complexity Low_complexity 1 30 0 4 961 739 269 64 27 chr11 49319454 49319829 -72524027 + L1M2 LINE L1 3925 4313 -1830 4 961 339 25 0 0 chr11 49319878 49319918 -72523938 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 961 1130 140 4 49 chr11 49319940 49320165 -72523691 - Lx LINE L1 -5 6649 6435 4 961 414 108 0 0 chr11 49321185 49321250 -72522606 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 961 1255 254 28 14 chr11 49321252 49321543 -72522313 - Lx5 LINE L1 -25 7025 6731 4 961 375 281 11 0 chr11 49322881 49322970 -72520886 + Lx6 LINE L1 7036 7125 -335 4 961 537 16 0 0 chr11 49322998 49323060 -72520796 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 961 557 205 41 35 chr11 49323060 49323232 -72520624 + Lx6 LINE L1 7288 7460 0 4 961 914 157 72 6 chr11 49323717 49323866 -72519990 + B2_Mm2 SINE B2 14 170 -25 4 961 222 37 0 0 chr11 49323866 49323893 -72519963 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 4 961 914 157 72 6 chr11 49323893 49323910 -72519946 + B2_Mm2 SINE B2 171 190 -5 4 961 585 268 186 4 chr11 49323993 49324494 -72519362 + Lx9 LINE L1 7053 7644 0 4 961 373 296 127 28 chr11 49324494 49324706 -72519150 - L1MCa LINE L1 -4667 1841 1609 4 961 340 295 72 57 chr11 49324707 49324901 -72518955 - L1MC1 LINE L1 0 6333 6137 4 961 326 228 138 6 chr11 49324951 49325110 -72518746 - L1M3 LINE L1 -1053 5087 4908 4 961 1742 203 78 0 chr11 49328647 49329021 -72514835 + RMER1B Other Other 418 820 -246 4 961 2066 116 3 75 chr11 49329023 49329368 -72514488 - ORR1A2 LTR MaLR -2 325 6 4 961 1075 145 23 89 chr11 49329368 49329626 -72514230 + RMER1B Other Other 823 1063 -3 4 961 256 258 112 75 chr11 49330478 49330612 -72513244 + L1M2 LINE L1 2592 2730 -3413 4 961 778 262 68 15 chr11 49330650 49330855 -72513001 - B3 SINE B2 0 216 1 4 961 464 282 68 0 chr11 49330869 49331075 -72512781 + L1M2 LINE L1 2769 2988 -3155 4 961 423 189 23 40 chr11 49331118 49331294 -72512562 + (CA)n Simple_repeat Simple_repeat 1 173 0 4 961 279 266 112 34 chr11 49331665 49331844 -72512012 + L1M2 LINE L1 5571 5763 -426 4 961 4276 59 0 0 chr11 49332155 49332677 -72511179 - L1_Mus1 LINE L1 0 6567 6046 4 961 387 0 0 0 chr11 49332841 49332884 -72510972 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 961 1523 236 113 37 chr11 49334049 49334181 -72509675 - Lx6 LINE L1 -57 7403 7244 4 961 1516 29 0 0 chr11 49334181 49334355 -72509501 + L1Md_A LINE L1 6409 6582 0 4 961 1523 236 113 37 chr11 49334355 49334604 -72509252 - Lx6 LINE L1 -217 7243 6993 4 961 1987 241 45 39 chr11 49334604 49335139 -72508717 + Lx7 LINE L1 6928 7465 -231 4 961 225 0 0 0 chr11 49335189 49335214 -72508642 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 961 462 248 24 0 chr11 49335222 49335347 -72508509 + Lx7 LINE L1 7569 7696 0 4 961 374 329 31 25 chr11 49335574 49335736 -72508120 + RSINE1 SINE B4 3 165 0 4 961 257 182 36 0 chr11 49336791 49336846 -72507010 + B4A SINE B4 1 57 -235 4 961 1718 240 40 16 chr11 49338462 49338915 -72504941 + RLTR11A2 LTR ERVK 6 469 -58 4 961 557 64 13 0 chr11 49339625 49339703 -72504153 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 961 1631 154 0 28 chr11 49339703 49339957 -72503899 - Lx4A LINE L1 -4 7054 6808 4 961 226 250 59 0 chr11 49340672 49340740 -72503116 + Lx8 LINE L1 5848 5919 -1554 4 961 1494 222 134 3 chr11 49340795 49341160 -72502696 + MTD LTR MaLR 7 419 0 4 961 215 194 0 0 chr11 49341387 49341423 -72502433 + polypurine Low_complexity Low_complexity 1 36 0 4 961 322 167 43 57 chr11 49341830 49341900 -72501956 + ID4_ SINE ID 1 69 -14 4 961 676 177 24 0 chr11 49343972 49344096 -72499760 + B1_Mur2 SINE Alu 3 129 -20 4 961 330 299 14 42 chr11 49344096 49344114 -72499742 + ID_B1 SINE B4 84 221 -3 4 961 279 301 121 0 chr11 49345905 49345988 -72497868 - PB1D10 SINE Alu -15 102 10 4 961 866 216 14 0 chr11 49346020 49346159 -72497697 + B1_Mur1 SINE Alu 3 143 -6 4 961 1277 286 94 0 chr11 49346619 49346983 -72496873 + MTD LTR MaLR 18 405 -14 4 961 243 385 0 0 chr11 49346988 49347071 -72496785 - ID_B1 SINE B4 -28 196 114 4 961 22 35 0 0 chr11 49347162 49347191 -72496665 + AT_rich Low_complexity Low_complexity 1 29 0 4 961 185 372 84 15 chr11 49347519 49347721 -72496135 - MIRc SINE MIR -29 239 24 4 961 899 295 86 27 chr11 49347737 49348110 -72495746 + Lx8 LINE L1 7079 7473 0 4 961 3740 68 15 0 chr11 49348148 49348602 -72495254 + L1_Mus1 LINE L1 6105 6565 -2 4 961 430 158 213 37 chr11 49349663 49349827 -72494029 + MMAR1 DNA Mariner 34 226 -1060 4 961 227 309 12 47 chr11 49350702 49350787 -72493069 + ID4 SINE ID 2 83 0 4 961 492 261 44 22 chr11 49350826 49350963 -72492893 - Lx8 LINE L1 -234 7239 7100 4 961 443 332 115 11 chr11 49351516 49351951 -72491905 + L1MB8 LINE L1 5697 6176 -2 4 961 1321 251 28 12 chr11 49352197 49352519 -72491337 - RLTR18B LTR ERVK 0 512 186 4 961 1004 265 33 63 chr11 49352570 49352872 -72490984 - RLTR18 LTR ERVK -309 307 15 4 961 1124 263 131 16 chr11 49352890 49353265 -72490591 + MTD LTR MaLR 2 419 0 4 961 225 94 0 0 chr11 49353276 49353308 -72490548 + (TCC)n Simple_repeat Simple_repeat 3 34 0 4 961 2023 294 62 11 chr11 49353476 49354135 -72489721 - Lx8 LINE L1 -364 7109 6417 4 961 452 320 47 89 chr11 49354158 49354371 -72489485 + MTEa LTR MaLR 19 222 -157 4 961 733 187 30 0 chr11 49354401 49354535 -72489321 - ORR1C1 LTR MaLR 0 384 247 4 961 1457 186 15 19 chr11 49354934 49355217 -72488639 - ORR1C1 LTR MaLR -132 246 1 4 961 283 273 118 0 chr11 49355217 49355308 -72488548 + MTEa LTR MaLR 262 365 -14 4 961 2534 157 22 5 chr11 49355420 49355830 -72488026 - MTC LTR MaLR -2 419 3 4 961 225 308 29 58 chr11 49357047 49357116 -72486740 + ZP3AR Satellite Satellite 19 85 -127 4 961 279 306 0 96 chr11 49357075 49357169 -72486687 + ID4_ SINE ID 3 87 -65 4 961 2521 32 0 4 chr11 49358160 49358440 -72485416 + L1Md_F2 LINE L1 6290 6568 -14 4 961 577 290 65 95 chr11 49359859 49360122 -72483734 + B4 SINE B4 1 255 -37 4 961 281 301 140 0 chr11 49360779 49360872 -72482984 - PB1D10 SINE Alu 0 117 12 4 961 323 250 68 0 chr11 49361360 49361448 -72482408 + PB1D7 SINE Alu 13 106 -14 4 961 414 100 0 0 chr11 49361474 49361534 -72482322 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 4 961 1137 111 0 0 chr11 49361555 49361727 -72482129 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 4 961 288 247 35 23 chr11 49362108 49362195 -72481661 - L1M2 LINE L1 -1145 4998 4911 4 961 710 127 8 8 chr11 49362275 49362394 -72481462 - URR1B DNA MER1_type -6 219 101 4 961 342 245 129 5 chr11 49362467 49362660 -72481196 + L1M2 LINE L1 4254 4470 -1673 4 961 24 0 0 0 chr11 49362761 49362785 -72481071 + AT_rich Low_complexity Low_complexity 1 24 0 4 961 846 235 77 0 chr11 49362785 49362968 -72480888 + B3 SINE B2 7 203 -13 4 961 213 39 0 0 chr11 49363483 49363509 -72480347 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 961 568 153 7 7 chr11 49363732 49363870 -72479986 + (TAGA)n Simple_repeat Simple_repeat 1 138 0 4 961 1092 14 21 0 chr11 49363896 49364038 -72479818 + (TAGA)n Simple_repeat Simple_repeat 1 145 0 4 961 378 107 0 0 chr11 49364039 49364095 -72479761 + (CATA)n Simple_repeat Simple_repeat 1 56 0 4 961 1275 18 18 0 chr11 49364161 49364327 -72479529 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 4 961 366 23 0 0 chr11 49364328 49364371 -72479485 + (CATA)n Simple_repeat Simple_repeat 1 43 0 4 961 1280 71 18 0 chr11 49364383 49364712 -72479144 + (TAGA)n Simple_repeat Simple_repeat 1 335 0 4 961 1398 17 17 0 chr11 49364730 49364907 -72478949 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 961 440 190 128 6 chr11 49366237 49366401 -72477455 + MMAR1 DNA Mariner 43 226 -1060 4 961 5618 115 2 4 chr11 49366454 49367273 -72476583 + L1_Mm LINE L1 4683 5500 -383 4 961 251 150 0 0 chr11 49367709 49367749 -72476107 + L1M3f LINE L1 647 686 -4642 4 961 1383 165 37 0 chr11 49368343 49368585 -72475271 - ORR1C1 LTR MaLR -127 251 1 4 961 244 263 66 0 chr11 49368602 49368678 -72475178 + ORR1E LTR MaLR 271 351 -8 4 961 2316 157 20 105 chr11 49368788 49369244 -72474612 - MTC LTR MaLR -2 419 3 4 961 277 288 11 101 chr11 49370475 49370564 -72473292 + ID4_ SINE ID 3 83 0 4 961 538 273 75 103 chr11 49372927 49373209 -72470647 + B4 SINE B4 1 274 -18 4 961 282 56 0 0 chr11 49373248 49373284 -72470572 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 961 285 301 140 0 chr11 49373844 49373937 -72469919 - PB1D10 SINE Alu 0 117 12 4 961 331 250 68 0 chr11 49374431 49374519 -72469337 + PB1D7 SINE Alu 13 106 -14 4 961 905 169 11 0 chr11 49374523 49374701 -72469155 + GA-rich Low_complexity Low_complexity 1 180 0 4 961 252 224 158 0 chr11 49374855 49374931 -72468925 - L1MC1 LINE L1 -20 6313 6226 4 961 302 235 35 23 chr11 49375081 49375168 -72468688 - L1M2 LINE L1 -1145 4998 4911 4 961 710 127 8 8 chr11 49375248 49375367 -72468489 - URR1B DNA MER1_type -6 219 101 4 961 229 200 0 0 chr11 49375364 49375404 -72468452 - URR1B DNA MER1_type -185 40 1 4 961 362 238 129 5 chr11 49375440 49375634 -72468222 + L1M2 LINE L1 4253 4470 -1673 4 961 857 229 77 0 chr11 49375759 49375942 -72467914 + B3 SINE B2 7 203 -13 4 961 195 42 0 0 chr11 49376441 49376465 -72467391 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 961 842 157 0 6 chr11 49376688 49376867 -72466989 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 4 961 1064 101 6 0 chr11 49376899 49377077 -72466779 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 961 238 233 22 55 chr11 49377080 49377171 -72466685 + Lx9 LINE L1 7513 7600 -44 4 961 28 0 0 0 chr11 49377343 49377371 -72466485 + AT_rich Low_complexity Low_complexity 1 28 0 5 961 1001 294 71 53 chr11 49379016 49379267 -72464589 + L1MA4 LINE L1 5625 5909 -391 5 961 4026 38 0 0 chr11 49379267 49379716 -72464140 - L1Md_T LINE L1 0 6582 6134 5 961 1001 292 73 54 chr11 49379716 49380094 -72463762 + L1MA4 LINE L1 5910 6294 -6 5 961 219 231 0 0 chr11 49380197 49380236 -72463620 + polypurine Low_complexity Low_complexity 1 39 0 5 961 312 27 0 0 chr11 49380246 49380283 -72463573 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 961 562 229 0 11 chr11 49380319 49380500 -72463356 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 961 209 91 45 0 chr11 49380829 49380873 -72462983 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 5 961 231 364 85 7 chr11 49380967 49381108 -72462748 + L1M3e LINE L1 147 298 -6732 5 961 65 25 0 0 chr11 49382365 49382444 -72461412 + AT_rich Low_complexity Low_complexity 1 79 0 5 961 259 258 137 0 chr11 49382562 49382637 -72461219 + PB1D10 SINE Alu 13 98 -51 5 961 283 132 147 0 chr11 49382648 49382716 -72461140 + L1M2 LINE L1 2377 2454 -3689 5 961 21 0 0 0 chr11 49382733 49382754 -72461102 + AT_rich Low_complexity Low_complexity 1 21 0 5 961 186 43 0 0 chr11 49382754 49382777 -72461079 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 961 843 116 33 0 chr11 49382790 49382911 -72460945 - B1_Mus2 SINE Alu -10 137 13 5 961 316 222 0 89 chr11 49382841 49382920 -72460936 - MT2B2 LTR ERVL -345 239 168 5 961 950 288 39 18 chr11 49382926 49383258 -72460598 + L1M2 LINE L1 2462 2800 -3343 5 961 4123 199 94 77 chr11 49383243 49384287 -72459569 - RMER1B Other Other -2 1064 3 5 961 747 190 0 23 chr11 49384749 49384878 -72458978 + B1_Mur4 SINE Alu 2 127 -23 5 961 256 246 0 0 chr11 49385027 49385092 -72458764 + L1M2 LINE L1 4547 4611 -1532 5 961 683 258 92 58 chr11 49385092 49385252 -72458604 + ID_B1 SINE B4 3 164 -60 5 961 4783 112 18 126 chr11 49385252 49385570 -72458286 + RMER17D2 LTR ERVK 1 324 -485 5 961 311 0 0 25 chr11 49385570 49385610 -72458246 + (TCTCC)n Simple_repeat Simple_repeat 2 40 0 5 961 4783 112 18 126 chr11 49385610 49386198 -72457658 + RMER17D2 LTR ERVK 325 808 -1 5 961 683 258 92 58 chr11 49386198 49386243 -72457613 + ID_B1 SINE B4 165 215 -9 5 961 7961 55 8 0 chr11 49386369 49387393 -72456463 + L1_Mus1 LINE L1 5508 6540 -27 5 961 257 68 0 22 chr11 49387393 49387438 -72456418 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 5 961 488 278 22 22 chr11 49387453 49387681 -72456175 + L1M2 LINE L1 5263 5490 -810 5 961 1314 227 20 117 chr11 49387708 49388117 -72455739 + MTE2a LTR MaLR 11 379 0 5 961 1146 95 0 0 chr11 49388408 49388555 -72455301 + B1_Mus2 SINE Alu 1 147 0 5 961 324 0 0 0 chr11 49390004 49390040 -72453816 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 961 261 0 0 0 chr11 49390105 49390134 -72453722 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 961 621 294 7 7 chr11 49390193 49390340 -72453516 - RSINE1 SINE B4 -14 151 5 5 961 242 56 28 0 chr11 49390533 49390569 -72453287 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 5 961 2137 126 40 6 chr11 49390569 49390897 -72452959 - Lx4A LINE L1 -7 7051 6713 5 961 258 32 0 0 chr11 49390991 49391022 -72452834 + (CAAAT)n Simple_repeat Simple_repeat 1 31 0 5 961 3422 191 72 65 chr11 49391272 49392424 -72451432 + RMER1A Other Other 14 1066 0 5 961 228 240 0 0 chr11 49392518 49392568 -72451288 - L1M4 LINE L1 -1550 4596 4547 5 961 343 298 143 45 chr11 49392738 49393130 -72450726 - L1M4 LINE L1 -1712 4434 4004 5 961 629 74 21 0 chr11 49393130 49393225 -72450631 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 5 961 819 270 105 9 chr11 49393235 49393560 -72450296 - L1M4 LINE L1 -2137 4009 3654 5 961 278 319 23 47 chr11 49393578 49393749 -72450107 - L1M4 LINE L1 -2572 3568 3402 5 961 474 259 62 127 chr11 49393760 49394009 -72449847 - L1M3 LINE L1 -1655 4485 4245 5 961 309 51 0 0 chr11 49394009 49394048 -72449808 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 961 474 259 62 127 chr11 49394048 49394200 -72449656 - L1M3 LINE L1 -1896 4244 4110 5 961 763 234 25 12 chr11 49394384 49394544 -72449312 + B3A SINE B2 36 197 -1 5 961 446 309 98 59 chr11 49394560 49394897 -72448959 + L1MC2 LINE L1 5879 6228 -116 5 961 318 235 14 68 chr11 49394906 49394979 -72448877 + ID4_ SINE ID 8 76 -7 5 961 315 177 0 0 chr11 49395005 49395067 -72448789 + GA-rich Low_complexity Low_complexity 3 64 0 5 961 37 0 0 0 chr11 49395231 49395268 -72448588 + AT_rich Low_complexity Low_complexity 1 37 0 5 961 310 304 6 1 chr11 49395384 49395478 -72448378 + MIRb SINE MIR 23 113 -95 5 961 622 310 141 42 chr11 49395478 49395862 -72447994 - MER67A LTR ERV1 -74 469 44 5 961 787 220 0 0 chr11 49395862 49396003 -72447853 + B1_Mur2 SINE Alu 1 141 -8 5 961 622 310 141 42 chr11 49396003 49396043 -72447813 - MER67A LTR ERV1 -500 43 3 5 961 342 0 0 0 chr11 49396102 49396140 -72447716 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 961 647 216 82 0 chr11 49397105 49397239 -72446617 - B1_Mur4 SINE Alu -2 148 4 5 961 392 274 12 0 chr11 49397284 49397368 -72446488 + B1_Mur4 SINE Alu 4 88 -62 5 961 288 0 0 0 chr11 49397516 49397548 -72446308 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 961 376 103 0 33 chr11 49397704 49397764 -72446092 + B1_Mur1 SINE Alu 74 131 -18 5 961 505 167 33 22 chr11 49398006 49398098 -72445758 - MTC LTR MaLR -326 95 3 5 961 470 257 214 38 chr11 49398161 49398371 -72445485 - MLT1D LTR MaLR -120 385 139 5 961 1022 145 0 0 chr11 49398755 49398900 -72444956 + B1_Mus2 SINE Alu 2 146 -1 5 961 826 180 7 14 chr11 49399127 49399268 -72444588 + B1_Mus2 SINE Alu 7 146 -1 5 961 1273 240 50 106 chr11 49399476 49399872 -72443984 + MTE2a LTR MaLR 6 379 0 5 961 1074 187 103 5 chr11 49400413 49400617 -72443239 + URR1B DNA MER1_type 2 225 0 5 961 309 26 0 0 chr11 49400687 49400725 -72443131 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 961 271 357 0 0 chr11 49402033 49402204 -72441652 + (CAG)n Simple_repeat Simple_repeat 3 173 0 5 961 218 325 0 0 chr11 49402219 49402339 -72441517 + (CAG)n Simple_repeat Simple_repeat 3 122 0 5 961 317 327 0 0 chr11 49402453 49402615 -72441241 + (CAG)n Simple_repeat Simple_repeat 3 164 0 5 961 210 276 0 0 chr11 49403569 49403721 -72440135 + GA-rich Low_complexity Low_complexity 1 152 0 5 961 1398 97 249 32 chr11 49404333 49404610 -72439246 + Lx4A LINE L1 6722 7058 0 5 961 34 0 0 0 chr11 49404610 49404644 -72439212 + AT_rich Low_complexity Low_complexity 1 34 0 5 961 423 296 7 78 chr11 49404647 49404862 -72438994 + L1MD2 LINE L1 5828 6027 -152 5 961 239 133 0 22 chr11 49405092 49405138 -72438718 + (TATG)n Simple_repeat Simple_repeat 3 47 0 5 961 239 196 0 38 chr11 49405138 49405191 -72438665 - B1_Mur4 SINE Alu -57 93 43 5 961 381 162 0 0 chr11 49405191 49405259 -72438597 + (TCTCTG)n Simple_repeat Simple_repeat 1 68 0 5 961 252 317 0 0 chr11 49405259 49405341 -72438515 + (CCTG)n Simple_repeat Simple_repeat 3 84 0 5 961 301 140 0 39 chr11 49405351 49405403 -72438453 - B1_Mus1 SINE Alu -88 60 11 5 961 971 135 0 39 chr11 49405424 49405578 -72438278 - B1_Mus1 SINE Alu 0 148 1 5 961 229 231 0 44 chr11 49405742 49405810 -72438046 + ALINE LINE RTE 238 302 -315 5 961 207 0 0 0 chr11 49405966 49405989 -72437867 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 961 415 115 0 0 chr11 49406412 49406473 -72437383 + B2_Mm2 SINE B2 102 162 -33 5 961 186 43 0 0 chr11 49406475 49406498 -72437358 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 961 945 235 231 37 chr11 49406528 49406914 -72436942 - MT2A LTR ERVL -6 595 87 5 961 792 204 0 12 chr11 49406914 49407078 -72436778 - MERVL_2A-int LTR ERVL -527 5234 5073 5 961 309 272 48 0 chr11 49407096 49407199 -72436657 - MERVL_2A-int LTR ERVL -755 5006 4899 5 961 209 125 25 0 chr11 49407202 49407242 -72436614 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 961 347 310 20 0 chr11 49407445 49407545 -72436311 - Lx7 LINE L1 -389 7307 7206 5 961 3013 228 47 19 chr11 49407628 49408349 -72435507 - Lx6 LINE L1 -182 7278 6538 5 961 1132 178 185 64 chr11 49408367 49408544 -72435312 + ORR1D1 LTR MaLR 1 164 -210 5 961 780 11 0 0 chr11 49408544 49408633 -72435223 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 961 1132 178 185 64 chr11 49408633 49408785 -72435071 + ORR1D1 LTR MaLR 165 369 -5 5 961 862 286 35 120 chr11 49408785 49409127 -72434729 + MER74A LTR ERVL 40 352 -206 5 961 1192 234 111 9 chr11 49410046 49410361 -72433495 - ORR1D2 LTR MaLR -9 361 15 5 961 203 170 0 21 chr11 49410549 49410597 -72433259 + GA-rich Low_complexity Low_complexity 3 49 0 5 961 485 303 49 0 chr11 49411124 49411266 -72432590 + B1F SINE Alu 1 149 0 5 961 333 68 0 0 chr11 49411271 49411315 -72432541 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 961 257 241 30 0 chr11 49411376 49411509 -72432347 + GA-rich Low_complexity Low_complexity 1 137 0 5 961 192 380 32 40 chr11 49411553 49411679 -72432177 - L3 LINE CR1 -207 4282 4158 5 961 2863 132 55 12 chr11 49411726 49412216 -72431640 + RLTR28 LTR ERVL 1 511 -13 5 961 1471 34 88 28 chr11 49412240 49412455 -72431401 - IAPLTR2_Mm LTR ERVK 0 475 248 5 961 2917 52 55 70 chr11 49412461 49412917 -72430939 - IAPLTR2_Mm LTR ERVK -26 449 1 5 961 1001 229 60 0 chr11 49413123 49413324 -72430532 + ID_B1 SINE B4 1 213 -11 5 961 407 237 9 0 chr11 49413324 49413438 -72430418 + (TATG)n Simple_repeat Simple_repeat 2 116 0 5 961 247 186 16 63 chr11 49413638 49413701 -72430155 + MLT1A1 LTR MaLR 311 370 -38 5 120 1125 257 92 39 chr11 49413872 49414232 -72429624 - MTE2a LTR MaLR 0 379 1 5 962 228 286 17 95 chr11 49415046 49415162 -72428694 - MamGypLTR2c LTR Gypsy -923 145 39 5 962 270 399 6 45 chr11 49415357 49415533 -72428323 - MLT1H LTR MaLR -375 174 6 5 962 387 0 0 0 chr11 49415580 49415623 -72428233 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 962 28 48 0 0 chr11 49415649 49415691 -72428165 + AT_rich Low_complexity Low_complexity 1 42 0 5 962 350 300 30 85 chr11 49415730 49415894 -72427962 - L1M4 LINE L1 -1144 5002 4848 5 962 548 282 212 35 chr11 49415880 49416310 -72427546 + L1M4c LINE L1 4 509 -5875 5 962 4375 158 90 51 chr11 49416310 49416422 -72427434 + RMER19B LTR ERVK 1 79 -823 5 962 213 39 0 0 chr11 49416422 49416448 -72427408 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5 962 4375 158 90 51 chr11 49416448 49417203 -72426653 + RMER19B LTR ERVK 80 902 0 5 962 280 235 0 14 chr11 49417204 49417273 -72426583 + L1M4c LINE L1 506 573 -5811 5 962 1066 153 17 23 chr11 49417274 49417448 -72426408 + MTC LTR MaLR 241 413 -8 6 962 757 53 11 0 chr11 49417782 49417877 -72425979 + B1_Mus2 SINE Alu 52 147 0 6 962 843 135 0 19 chr11 49417880 49418039 -72425817 + GA-rich Low_complexity Low_complexity 2 157 0 6 962 958 204 66 0 chr11 49418394 49418590 -72425266 + B3 SINE B2 8 216 0 6 962 314 331 54 54 chr11 49418593 49418613 -72425243 + L1MC LINE L1 5156 5174 -972 6 962 947 213 33 28 chr11 49418613 49418826 -72425030 - B3 SINE B2 -1 215 2 6 962 314 331 54 54 chr11 49418826 49418952 -72424904 + L1MC LINE L1 5175 5302 -844 6 962 387 0 0 0 chr11 49418980 49419023 -72424833 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 962 477 0 0 0 chr11 49419023 49419075 -72424781 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 962 272 321 88 12 chr11 49419075 49419245 -72424611 + L1M4c LINE L1 4589 4771 -1611 5 962 473 248 16 47 chr11 49419786 49419913 -72423943 + PB1 SINE Alu 2 124 -3 6 962 239 288 0 0 chr11 49419948 49420007 -72423849 + MLT1G3 LTR MaLR 2 60 -535 6 962 244 371 0 0 chr11 49420104 49420174 -72423682 + MLT1G3 LTR MaLR 284 353 -242 6 962 748 222 28 0 chr11 49420313 49420457 -72423399 + B1_Mur3 SINE Alu 1 148 -1 6 962 7390 160 35 15 chr11 49420612 49422263 -72421593 + Lx5 LINE L1 5403 7050 0 6 962 273 57 0 0 chr11 49422264 49422299 -72421557 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 6 962 31 82 0 0 chr11 49423139 49423212 -72420644 + GC_rich Low_complexity Low_complexity 1 73 0 6 962 1003 142 97 66 chr11 49426000 49426196 -72417660 - URR1A DNA MER1_type -24 202 1 6 962 251 296 28 0 chr11 49428058 49428129 -72415727 - MIRb SINE MIR -94 174 102 6 962 337 277 75 25 chr11 49429244 49429386 -72414470 + MIRb SINE MIR 112 262 0 6 962 495 219 29 0 chr11 49431399 49431504 -72412352 + PB1D10 SINE Alu 2 109 -8 6 962 745 247 10 7 chr11 49432478 49432772 -72411084 + (TCCA)n Simple_repeat Simple_repeat 1 294 0 6 962 249 33 0 0 chr11 49433309 49433339 -72410517 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 962 1032 210 30 10 chr11 49433341 49433543 -72410313 - B3 SINE B2 -10 206 1 6 962 891 53 0 0 chr11 49433547 49433660 -72410196 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 962 302 282 154 17 chr11 49434842 49435134 -72408722 - L2 LINE L2 -2478 941 610 6 962 209 204 148 0 chr11 49435175 49435229 -72408627 - L2 LINE L2 -2911 508 447 6 962 224 232 40 40 chr11 49435318 49435417 -72408439 + (TCCA)n Simple_repeat Simple_repeat 2 100 0 6 962 1019 116 0 7 chr11 49436149 49436296 -72407560 + B1_Mus1 SINE Alu 2 147 -1 6 962 258 340 63 78 chr11 49442309 49442410 -72401446 - L2b LINE L2 -93 3282 3186 6 962 939 88 7 13 chr11 49442410 49442560 -72401296 + (GGAA)n Simple_repeat Simple_repeat 2 150 0 6 962 258 340 63 78 chr11 49442560 49442713 -72401143 - L2b LINE L2 -190 3185 3032 6 962 481 282 36 26 chr11 49443322 49443532 -72400324 + MER2 DNA MER2_type 97 310 -35 6 962 222 288 79 27 chr11 49444218 49444352 -72399504 - MIR3 SINE MIR -43 165 30 6 962 385 258 97 0 chr11 49444379 49444472 -72399384 + ID_B1 SINE B4 87 188 -36 6 962 897 165 0 0 chr11 49444483 49444647 -72399209 + GA-rich Low_complexity Low_complexity 6 169 0 6 962 270 0 0 0 chr11 49447176 49447206 -72396650 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 962 24 0 0 0 chr11 49448799 49448823 -72395033 + GC_rich Low_complexity Low_complexity 1 24 0 6 962 2349 83 3 50 chr11 49452164 49452217 -72391639 - ORR1A2 LTR MaLR 0 327 289 6 962 2372 29 7 4 chr11 49452217 49452498 -72391358 - L1Md_F3 LINE L1 -1 6583 6302 6 962 2349 83 3 50 chr11 49452498 49452787 -72391069 - ORR1A2 LTR MaLR -39 288 1 6 962 474 264 60 10 chr11 49452890 49453026 -72390830 - MTE2b LTR MaLR -201 178 38 6 962 235 261 43 0 chr11 49453264 49453402 -72390454 + GA-rich Low_complexity Low_complexity 4 147 0 6 962 268 234 21 0 chr11 49453469 49453563 -72390293 + GA-rich Low_complexity Low_complexity 3 98 0 6 962 1999 172 37 43 chr11 49454076 49454452 -72389404 - ORR1C2 LTR MaLR 0 384 11 6 962 744 171 91 59 chr11 49454984 49455170 -72388686 - B2_Mm2 SINE B2 -2 193 2 6 962 527 289 65 19 chr11 49455189 49455344 -72388512 - B4A SINE B4 -130 162 1 6 962 1209 68 0 0 chr11 49455453 49455600 -72388256 + B1_Mm SINE Alu 1 147 0 6 962 219 103 0 0 chr11 49455600 49455639 -72388217 + (A)n Simple_repeat Simple_repeat 1 39 0 6 962 428 251 120 147 chr11 49456429 49456845 -72387011 - MLT1A1 LTR MaLR -1 407 3 6 962 304 258 148 62 chr11 49458061 49458189 -72385667 - MLT1A1 LTR MaLR -2 406 268 6 962 503 289 96 19 chr11 49459723 49459994 -72383862 - L1MA4 LINE L1 -274 6026 5735 6 962 475 82 54 9 chr11 49460234 49460345 -72383511 + (GTTTG)n Simple_repeat Simple_repeat 3 118 0 6 962 587 178 0 27 chr11 49460346 49460456 -72383400 - PB1D9 SINE Alu -2 118 12 6 962 563 254 9 0 chr11 49460536 49460646 -72383210 + RSINE1 SINE B4 43 153 -12 6 962 363 187 0 0 chr11 49460681 49460788 -72383068 + GA-rich Low_complexity Low_complexity 1 107 0 6 962 500 257 38 0 chr11 49461703 49461808 -72382048 + B3 SINE B2 108 216 0 6 962 590 278 80 40 chr11 49462246 49462422 -72381434 + B3 SINE B2 1 183 -33 6 962 1475 39 0 0 chr11 49462419 49462598 -72381258 + B2_Mm1a SINE B2 6 184 -9 6 962 526 207 95 0 chr11 49462726 49462842 -72381014 + RSINE1 SINE B4 2 128 -37 6 962 423 0 0 0 chr11 49462842 49462889 -72380967 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 962 386 20 20 0 chr11 49462889 49462939 -72380917 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 962 450 0 0 0 chr11 49463197 49463247 -72380609 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 962 909 270 31 48 chr11 49463253 49463545 -72380311 - B4A SINE B4 -5 287 1 6 962 183 301 60 0 chr11 49463556 49463639 -72380217 - L2 LINE L2 -540 2879 2792 6 962 181 337 99 0 chr11 49463775 49463876 -72379980 - L2 LINE L2 -810 2609 2499 6 962 186 43 0 0 chr11 49466343 49466366 -72377490 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 962 304 296 139 81 chr11 49467402 49467458 -72376398 - MTEa LTR MaLR -196 183 1 6 962 323 254 68 60 chr11 49467458 49467575 -72376281 - MLT2B2 LTR ERVL -397 118 1 6 962 435 313 60 7 chr11 49467640 49467738 -72376118 + MLT1A LTR MaLR 57 162 -203 6 962 1643 206 41 35 chr11 49467738 49468081 -72375775 - ORR1D1 LTR MaLR 0 374 30 6 962 460 302 98 29 chr11 49468120 49468294 -72375562 + MLT1A LTR MaLR 167 352 -22 6 962 2799 149 66 26 chr11 49470063 49470599 -72373257 + RMER1B Other Other 423 1065 -1 6 962 450 0 0 0 chr11 49471052 49471102 -72372754 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 962 326 295 186 76 chr11 49472020 49472164 -72371692 + MLT1D LTR MaLR 64 218 -249 6 962 357 24 0 0 chr11 49472164 49472206 -72371650 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 962 391 267 196 15 chr11 49472206 49472417 -72371439 + MLT1D LTR MaLR 219 488 -17 6 962 228 329 35 0 chr11 49472737 49472822 -72371034 - BC1_Mm scRNA scRNA -50 102 15 6 962 182 65 65 0 chr11 49472848 49472879 -72370977 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 962 351 157 0 0 chr11 49473801 49473871 -72369985 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 962 298 217 72 0 chr11 49473956 49474039 -72369817 - L1MA4 LINE L1 -414 5886 5798 6 962 206 276 13 13 chr11 49474048 49474125 -72369731 + T-rich Low_complexity Low_complexity 2 78 0 6 962 195 129 0 0 chr11 49474554 49474585 -72369271 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 962 189 74 0 0 chr11 49474589 49474616 -72369240 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 6 962 592 109 234 9 chr11 49474616 49474722 -72369134 - B1_Mur4 SINE Alu 0 150 20 6 962 1005 182 49 34 chr11 49474707 49474912 -72368944 - URR1A DNA MER1_type -18 208 1 6 962 457 265 73 39 chr11 49474915 49475160 -72368696 + L1M2 LINE L1 2593 2879 -3264 6 962 189 241 0 0 chr11 49475211 49475265 -72368591 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 962 979 75 0 14 chr11 49475447 49475507 -72368349 + (GAA)n Simple_repeat Simple_repeat 2 60 0 6 962 1179 117 0 0 chr11 49475507 49475687 -72368169 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 962 979 75 0 14 chr11 49475687 49475774 -72368082 + (GAA)n Simple_repeat Simple_repeat 1 87 0 6 962 242 295 39 0 chr11 49475808 49475886 -72367970 - Tigger7 DNA MER2_type -2378 113 33 6 962 252 86 0 0 chr11 49478680 49478715 -72365141 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 962 182 118 0 29 chr11 49478715 49478750 -72365106 + (GGGGA)n Simple_repeat Simple_repeat 2 35 0 6 962 316 288 152 57 chr11 49479521 49479731 -72364125 + LTR16A LTR ERVL 147 376 -75 6 962 563 264 60 6 chr11 49479822 49480005 -72363851 - B3A SINE B2 -2 196 4 6 962 207 100 0 0 chr11 49480138 49480168 -72363688 + (T)n Simple_repeat Simple_repeat 1 30 0 6 962 314 208 27 27 chr11 49480501 49480575 -72363281 + ID4_ SINE ID 2 75 -8 6 962 1105 272 60 14 chr11 49480732 49481082 -72362774 - ORR1D2 LTR MaLR -2 368 3 6 962 389 284 113 73 chr11 49481187 49481585 -72362271 + L1MC5 LINE L1 6699 7112 -849 6 962 666 202 85 0 chr11 49481664 49481793 -72362063 - B1_Mur1 SINE Alu -9 140 1 6 962 466 263 37 90 chr11 49481868 49482056 -72361800 - B3 SINE B2 -3 213 36 6 962 23 0 0 0 chr11 49482427 49482450 -72361406 + AT_rich Low_complexity Low_complexity 1 23 0 6 962 228 282 183 0 chr11 49482493 49482564 -72361292 - B3 SINE B2 -43 173 90 6 962 1297 77 38 5 chr11 49482578 49482762 -72361094 + B2_Mm2 SINE B2 2 191 -4 6 962 635 196 182 0 chr11 49483092 49483240 -72360616 + ORR1B1-int LTR MaLR 448 622 -887 6 962 254 188 0 123 chr11 49483975 49484048 -72359808 + B1_Mur3 SINE Alu 1 64 -85 6 962 22 35 0 0 chr11 49484614 49484643 -72359213 + AT_rich Low_complexity Low_complexity 1 29 0 6 962 180 0 0 0 chr11 49484759 49484779 -72359077 + (A)n Simple_repeat Simple_repeat 1 20 0 6 962 267 356 106 72 chr11 49489283 49489519 -72354337 + ORR1E LTR MaLR 1 244 -115 7 962 352 275 45 18 chr11 49489659 49489770 -72354086 + PB1D10 SINE Alu 4 117 0 7 962 258 292 92 0 chr11 49490168 49490233 -72353623 + ID2 SINE ID 3 73 -10 7 962 694 234 27 14 chr11 49490261 49490408 -72353448 + RSINE1 SINE B4 4 152 -13 7 962 423 0 0 0 chr11 49490419 49490466 -72353390 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 962 1302 98 37 26 chr11 49491320 49491509 -72352347 - B2_Mm2 SINE B2 -3 192 2 7 962 21 0 0 0 chr11 49491827 49491848 -72352008 + AT_rich Low_complexity Low_complexity 1 21 0 7 962 216 196 0 0 chr11 49492120 49492166 -72351690 + T-rich Low_complexity Low_complexity 1 46 0 7 962 455 317 23 85 chr11 49493177 49493353 -72350503 + RSINE1 SINE B4 1 165 0 7 962 226 312 88 108 chr11 49493179 49493373 -72350483 + B2_Mm1a SINE B2 2 191 -2 7 962 255 299 78 0 chr11 49494969 49495046 -72348810 - ID4_ SINE ID 0 83 1 7 962 288 53 0 0 chr11 49495338 49495376 -72348480 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 962 236 50 75 0 chr11 49495416 49495456 -72348400 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 7 962 1370 77 0 32 chr11 49495889 49496077 -72347779 + B2_Mm2 SINE B2 5 186 -9 7 962 334 274 194 28 chr11 49497104 49497284 -72346572 - Tigger1 DNA MER2_type 0 2418 2209 7 962 279 328 68 8 chr11 49497295 49497412 -72346444 - Tigger1 DNA MER2_type -2294 124 1 7 962 263 333 74 44 chr11 49497677 49497812 -72346044 - MER20 DNA MER1_type -43 176 38 7 962 2791 174 41 30 chr11 49497773 49498225 -72345631 + RLTR20D LTR ERVK 20 463 -105 7 962 450 127 0 0 chr11 49498225 49498296 -72345560 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 962 2791 174 41 30 chr11 49498296 49498382 -72345474 + RLTR20D LTR ERVK 464 563 -5 7 962 22 0 0 0 chr11 49498553 49498575 -72345281 + AT_rich Low_complexity Low_complexity 1 22 0 7 962 31 0 0 0 chr11 49499007 49499038 -72344818 + AT_rich Low_complexity Low_complexity 1 31 0 7 962 1639 36 0 5 chr11 49499064 49499257 -72344599 + B2_Mm1a SINE B2 2 193 0 7 962 1055 184 43 14 chr11 49499271 49499481 -72344375 - B3 SINE B2 0 216 1 7 962 1190 48 7 0 chr11 49500669 49500815 -72343041 + B1_Mus2 SINE Alu 1 147 0 1 962 463 330 123 4 chr11 49500869 49501097 -72342759 + MTEa LTR MaLR 125 379 0 2 962 1087 100 0 20 chr11 49501503 49501656 -72342200 + B1_Mur4 SINE Alu 1 150 0 3 962 1256 107 21 36 chr11 49501858 49502052 -72341804 - B2_Mm2 SINE B2 -4 191 1 4 962 207 0 0 0 chr11 49502064 49502087 -72341769 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 962 451 248 17 8 chr11 49503412 49503530 -72340326 + PB1D9 SINE Alu 1 119 -1 6 962 401 328 42 0 chr11 49504297 49504538 -72339318 + L1MEc LINE L1 639 889 -5511 7 962 229 114 0 0 chr11 49504872 49504907 -72338949 + L1M4 LINE L1 4919 4953 -1193 8 962 837 248 20 0 chr11 49504911 49505113 -72338743 + B3 SINE B2 1 206 -10 9 962 21 36 0 0 chr11 49505113 49505141 -72338715 + AT_rich Low_complexity Low_complexity 1 28 0 1 962 242 179 132 15 chr11 49505164 49505232 -72338624 + L1M4 LINE L1 5093 5168 -978 8 962 729 224 0 0 chr11 49505236 49505383 -72338473 + B1_Mur3 SINE Alu 1 147 -2 1 962 275 246 56 157 chr11 49505383 49505432 -72338424 + MT2B LTR ERVL 169 344 -257 1 962 393 287 94 60 chr11 49505495 49505762 -72338094 + B4 SINE B4 1 276 -16 1 962 392 291 27 0 chr11 49505863 49505973 -72337883 + B1F1 SINE Alu 33 145 -4 1 962 818 249 102 35 chr11 49505986 49506328 -72337528 + L1M4 LINE L1 5317 5681 -503 8 962 640 113 10 0 chr11 49506349 49506446 -72337410 + B1_Mur3 SINE Alu 46 143 -6 1 962 186 217 0 0 chr11 49506857 49506872 -72336984 + A-rich Low_complexity Low_complexity 4 18 0 1 962 1166 75 0 0 chr11 49506872 49507019 -72336837 + B1_Mus2 SINE Alu 1 147 0 1 962 186 217 0 0 chr11 49507019 49507049 -72336807 + A-rich Low_complexity Low_complexity 19 48 0 1 962 342 115 0 0 chr11 49507038 49507090 -72336766 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 1 962 1178 271 48 32 chr11 49507126 49507499 -72336357 + MTEa LTR MaLR 1 379 0 2 962 448 273 190 49 chr11 49507925 49508514 -72335342 + L1MEc LINE L1 4005 4676 -1643 7 962 389 268 49 133 chr11 49508860 49508876 -72334980 - CYRA11_Mm Unknown Y-chromosome -215 402 305 2 962 1084 132 26 97 chr11 49508876 49509103 -72334753 + URR1B DNA MER1_type 1 211 -14 2 962 389 268 49 133 chr11 49509103 49509123 -72334733 - CYRA11_Mm Unknown Y-chromosome -215 304 162 2 962 277 211 42 14 chr11 49509198 49509270 -72334586 + L1MEc LINE L1 5503 5576 -941 7 962 204 125 0 0 chr11 49509280 49509312 -72334544 + (GAA)n Simple_repeat Simple_repeat 2 33 0 2 962 311 0 26 0 chr11 49509415 49509454 -72334402 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 2 962 694 218 57 83 chr11 49509589 49509819 -72334037 + ID_B1 SINE B4 1 224 0 2 962 565 224 75 52 chr11 49510026 49510200 -72333656 - B3A SINE B2 -1 197 20 2 962 192 77 0 0 chr11 49510593 49510619 -72333237 + (CACCC)n Simple_repeat Simple_repeat 2 27 0 2 962 1084 35 0 0 chr11 49511159 49511300 -72332556 + B1_Mus2 SINE Alu 7 147 0 2 962 180 0 0 0 chr11 49511905 49511925 -72331931 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 2 962 287 331 95 11 chr11 49513016 49513205 -72330651 + Lx7 LINE L1 7144 7348 -348 3 962 387 60 0 0 chr11 49513213 49513263 -72330593 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 962 304 253 122 7 chr11 49513306 49513453 -72330403 + L1MEc LINE L1 1408 1571 -4829 3 962 1370 61 67 0 chr11 49513552 49513732 -72330124 + B2_Mm2 SINE B2 1 192 -3 3 962 1553 27 49 0 chr11 49513922 49514106 -72329750 + B2_Mm1a SINE B2 1 193 0 3 962 534 237 200 13 chr11 49514106 49514341 -72329515 + L1MEc LINE L1 4492 4770 -1549 3 962 807 98 25 0 chr11 49514371 49514493 -72329363 + B2_Mm2 SINE B2 1 125 -70 3 962 225 0 0 0 chr11 49514504 49514529 -72329327 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 962 308 91 0 0 chr11 49514556 49514600 -72329256 + L1MD3 LINE L1 5182 5225 -921 3 962 527 286 130 65 chr11 49514600 49514642 -72329214 - ORR1E LTR MaLR -48 311 270 3 962 799 166 243 0 chr11 49514642 49514823 -72329033 - URR1B DNA MER1_type 0 225 1 3 962 527 286 130 65 chr11 49514823 49515072 -72328784 - ORR1E LTR MaLR -90 269 1 3 962 438 192 0 0 chr11 49515107 49515180 -72328676 + B1_Mur4 SINE Alu 3 75 -75 4 962 442 256 145 96 chr11 49515183 49515528 -72328328 + L1MD3 LINE L1 5477 5838 -2157 3 962 360 241 8 74 chr11 49515531 49515652 -72328204 + B1_Mur2 SINE Alu 1 113 -36 4 962 318 246 14 0 chr11 49516520 49516589 -72327267 - RSINE1 SINE B4 -30 135 66 4 962 417 255 239 5 chr11 49516581 49516794 -72327062 + Tigger7 DNA MER2_type 173 435 -2056 4 962 319 294 60 20 chr11 49516817 49516966 -72326890 + Tigger7 DNA MER2_type 2329 2483 -8 4 962 628 265 102 24 chr11 49516966 49517171 -72326685 - Tigger7 DNA MER2_type -2100 391 171 4 962 628 155 0 41 chr11 49517254 49517375 -72326481 - B1_Mur4 SINE Alu -34 116 1 4 962 234 305 138 32 chr11 49517456 49517673 -72326183 + L1MD3 LINE L1 6757 6996 -789 3 962 748 234 15 71 chr11 49517999 49518197 -72325659 + B3 SINE B2 26 212 -4 4 962 535 198 73 16 chr11 49519221 49519344 -72324512 - B1_Mm SINE Alu -9 138 9 4 962 877 132 28 7 chr11 49519621 49519766 -72324090 - B1_Mus1 SINE Alu 0 148 1 4 962 740 278 21 0 chr11 49519797 49519984 -72323872 - B3A SINE B2 0 198 8 4 962 733 200 14 7 chr11 49519998 49520144 -72323712 - B1_Mur1 SINE Alu -1 148 2 5 962 22 0 0 0 chr11 49520671 49520693 -72323163 + AT_rich Low_complexity Low_complexity 1 22 0 5 962 388 182 64 9 chr11 49521189 49521299 -72322557 + B1F1 SINE Alu 1 148 -1 5 962 701 270 170 45 chr11 49522013 49522504 -72321352 + Tigger9b DNA MER2_type 2 554 -70 5 962 22 35 0 0 chr11 49523017 49523046 -72320810 + AT_rich Low_complexity Low_complexity 1 29 0 5 962 180 241 93 0 chr11 49523184 49523238 -72320618 + L2c LINE L2 3051 3109 -278 5 962 1347 92 16 5 chr11 49523724 49523909 -72319947 + B2_Mm2 SINE B2 2 188 -7 5 962 499 256 40 0 chr11 49524109 49524234 -72319622 + B1_Mur1 SINE Alu 7 136 -13 5 962 225 0 0 0 chr11 49524234 49524259 -72319597 + (T)n Simple_repeat Simple_repeat 1 25 0 5 962 210 71 0 0 chr11 49525169 49525197 -72318659 + (G)n Simple_repeat Simple_repeat 1 28 0 5 962 210 129 32 16 chr11 49526090 49526153 -72317703 + (CCG)n Simple_repeat Simple_repeat 2 65 0 6 962 255 321 36 29 chr11 49528509 49528647 -72315209 - MLT1K LTR MaLR -36 559 421 6 962 1163 75 0 0 chr11 49530052 49530199 -72313657 + B1_Mus1 SINE Alu 2 148 0 6 962 282 254 0 0 chr11 49530295 49530358 -72313498 + MTE2a LTR MaLR 1 63 -316 6 962 411 169 0 14 chr11 49530379 49530451 -72313405 - B1_Mur1 SINE Alu 0 149 79 6 962 410 281 38 66 chr11 49530518 49530760 -72313096 - ORR1E LTR MaLR -140 230 1 6 962 703 259 157 69 chr11 49530926 49531106 -72312750 + MTE2a LTR MaLR 19 203 -176 6 962 1328 111 5 0 chr11 49531106 49531296 -72312560 - B2_Mm1t SINE B2 -2 191 1 6 962 703 259 157 69 chr11 49531296 49531389 -72312467 + MTE2a LTR MaLR 204 316 -63 6 962 402 179 39 0 chr11 49531537 49531615 -72312241 - L1MB5 LINE L1 -32 6142 6062 6 962 251 296 43 17 chr11 49531615 49531732 -72312124 + Charlie4a DNA MER1_type 191 310 -198 6 962 284 226 0 0 chr11 49531748 49531810 -72312046 + B3 SINE B2 1 62 -154 6 962 252 185 0 0 chr11 49531840 49531894 -72311962 + T-rich Low_complexity Low_complexity 1 54 0 7 962 1146 162 44 25 chr11 49531983 49532094 -72311762 + MT2A LTR ERVL 92 302 -191 7 962 225 0 0 0 chr11 49532094 49532119 -72311737 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 962 1146 169 34 17 chr11 49532119 49532335 -72311521 + MT2A LTR ERVL 185 456 -77 7 962 1119 173 34 15 chr11 49532361 49532566 -72311290 + B3 SINE B2 2 210 -6 7 962 279 0 0 0 chr11 49532584 49532615 -72311241 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7 962 1665 27 0 0 chr11 49532799 49532987 -72310869 - B2_Mm1a SINE B2 -5 188 1 7 962 451 274 135 0 chr11 49532990 49533205 -72310651 - L1MDb LINE L1 -2299 4238 3995 7 962 316 271 135 81 chr11 49533664 49533702 -72310154 - B2_Mm2 SINE B2 0 195 164 7 962 546 16 0 0 chr11 49533702 49533765 -72310091 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 962 447 239 205 4 chr11 49533765 49533911 -72309945 - B3A SINE B2 -30 168 1 7 962 205 152 21 21 chr11 49533986 49534033 -72309823 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 962 233 319 14 0 chr11 49534199 49534268 -72309588 - ID SINE ID -149 75 6 8 962 730 286 121 39 chr11 49534309 49534521 -72309335 - L1MDb LINE L1 -4428 2205 1981 7 962 3214 132 33 106 chr11 49534521 49535184 -72308672 - RLTR18 LTR ERVK -1 615 1 8 962 730 286 121 39 chr11 49535184 49535535 -72308321 - L1MDb LINE L1 -4653 1980 1596 7 962 859 309 89 62 chr11 49535601 49536030 -72307826 - MER44B DNA MER2_type -4 546 97 8 962 921 137 14 14 chr11 49536030 49536178 -72307678 - B1_Mur3 SINE Alu -1 148 1 8 962 859 309 89 62 chr11 49536178 49536263 -72307593 - MER44B DNA MER2_type -454 96 18 8 962 1106 311 40 63 chr11 49536274 49536925 -72306931 - L1MDb LINE L1 -5038 1502 867 7 962 581 69 0 11 chr11 49537786 49537874 -72305982 + (TG)n Simple_repeat Simple_repeat 1 87 0 8 962 686 252 77 45 chr11 49537878 49538098 -72305758 - B4A SINE B4 -22 270 44 8 962 792 168 20 34 chr11 49538845 49538993 -72304863 + B1_Mur3 SINE Alu 2 147 -2 8 962 237 132 47 35 chr11 49539006 49539092 -72304764 + GA-rich Low_complexity Low_complexity 1 87 0 8 962 442 219 66 25 chr11 49539453 49539575 -72304281 - MER20 DNA MER1_type -31 188 62 8 962 757 283 57 35 chr11 49539811 49540093 -72303763 + B4A SINE B4 5 292 0 8 962 239 294 0 29 chr11 49540043 49540113 -72303743 + B3A SINE B2 116 183 -15 9 962 581 303 8 60 chr11 49540893 49541142 -72302714 - MER2 DNA MER2_type -1 344 109 9 962 754 266 9 5 chr11 49541710 49541925 -72301931 - L1MA7 LINE L1 -11 6280 6065 9 962 270 0 0 0 chr11 49542140 49542170 -72301686 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 962 486 49 0 0 chr11 49543158 49543219 -72300637 + (CAATA)n Simple_repeat Simple_repeat 5 65 0 9 962 745 279 18 12 chr11 49543228 49543391 -72300465 + RSINE1 SINE B4 2 165 0 9 962 228 275 96 36 chr11 49544458 49544541 -72299315 - MLT1A1 LTR MaLR -266 142 55 9 962 571 197 103 0 chr11 49544620 49544737 -72299119 - RSINE1 SINE B4 -33 132 4 9 963 894 68 0 0 chr11 49545219 49545337 -72298519 + (TCC)n Simple_repeat Simple_repeat 3 120 0 9 963 1120 96 0 0 chr11 49545337 49545483 -72298373 - B1_Mus1 SINE Alu 0 148 3 9 963 615 71 20 10 chr11 49545502 49545601 -72298255 + (TCTCC)n Simple_repeat Simple_repeat 5 104 0 1 963 501 257 18 0 chr11 49545626 49545739 -72298117 - B3A SINE B2 -83 115 1 1 963 382 321 76 44 chr11 49546804 49547018 -72296838 + Tigger5 DNA MER2_type 9 230 -2176 1 963 2128 146 38 21 chr11 49547018 49547390 -72296466 - ORR1C1 LTR MaLR 0 378 1 1 963 1230 114 0 11 chr11 49547542 49547720 -72296136 - B2_Mm2 SINE B2 -19 176 1 1 963 22 35 0 0 chr11 49548641 49548670 -72295186 + AT_rich Low_complexity Low_complexity 1 29 0 1 963 281 129 41 49 chr11 49548696 49548800 -72295056 + A-rich Low_complexity Low_complexity 1 105 0 1 963 1482 69 16 0 chr11 49548800 49548989 -72294867 + B2_Mm2 SINE B2 2 193 -2 1 963 281 129 41 49 chr11 49548989 49549006 -72294850 + A-rich Low_complexity Low_complexity 106 121 0 1 963 1493 68 16 10 chr11 49549015 49549209 -72294647 + B2_Mm2 SINE B2 1 195 0 1 963 596 164 0 49 chr11 49549252 49549374 -72294482 - B1_Mur1 SINE Alu 0 149 34 1 963 343 297 127 13 chr11 49549483 49549633 -72294223 + MER74B LTR ERVL 291 457 -165 1 963 514 204 155 25 chr11 49549866 49550027 -72293829 - B3A SINE B2 -16 182 1 1 963 311 172 47 0 chr11 49550911 49550975 -72292881 + B3A SINE B2 63 129 -69 1 963 31 76 0 0 chr11 49551017 49551083 -72292773 + AT_rich Low_complexity Low_complexity 1 66 0 1 963 221 98 24 0 chr11 49551462 49551503 -72292353 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 963 297 0 0 0 chr11 49551504 49551537 -72292319 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 963 540 84 0 0 chr11 49551537 49551619 -72292237 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 963 855 176 170 5 chr11 49551657 49551851 -72292005 - RLTR42 LTR ERVK -7 232 7 1 963 288 0 0 0 chr11 49551851 49551883 -72291973 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 963 423 318 115 40 chr11 49552122 49552522 -72291334 - HAL1 LINE L1 -140 2367 1938 1 963 996 208 14 32 chr11 49552633 49552852 -72291004 + B3 SINE B2 2 216 0 1 963 1161 162 75 9 chr11 49553068 49553280 -72290576 + URR1A DNA MER1_type 1 226 0 1 963 393 316 184 39 chr11 49553642 49554339 -72289517 - HAL1 LINE L1 -746 1761 951 1 963 1065 114 0 0 chr11 49554339 49554681 -72289175 + (TG)n Simple_repeat Simple_repeat 1 342 0 1 963 393 316 184 39 chr11 49554681 49554771 -72289085 - HAL1 LINE L1 -1557 950 858 1 963 907 149 0 33 chr11 49554810 49554963 -72288893 - B1_Mur3 SINE Alu 0 149 2 1 963 1683 129 8 114 chr11 49555109 49555477 -72288379 + ORR1A4 LTR MaLR 1 329 0 1 963 1690 344 75 82 chr11 49555853 49556876 -72286980 + MTE-int LTR MaLR 17 1032 -548 1 963 389 239 0 0 chr11 49556872 49556943 -72286913 + PB1D7 SINE Alu 41 111 -9 1 963 192 152 0 0 chr11 49556949 49556982 -72286874 + GA-rich Low_complexity Low_complexity 3 35 0 1 963 1171 274 29 4 chr11 49558199 49558477 -72285379 + B4A SINE B4 2 286 -6 1 963 277 226 22 77 chr11 49558486 49558577 -72285279 - RMER12 LTR ERVK -503 819 734 1 963 651 294 20 0 chr11 49559063 49559209 -72284647 + RSINE1 SINE B4 2 150 -15 1 963 414 284 9 18 chr11 49559291 49559402 -72284454 - MLT1A0 LTR MaLR -214 151 42 1 963 794 303 56 15 chr11 49559799 49560120 -72283736 + MER2 DNA MER2_type 2 345 0 1 963 346 176 12 12 chr11 49561057 49561143 -72282713 + CT-rich Low_complexity Low_complexity 1 86 0 1 963 2025 125 3 0 chr11 49561360 49561648 -72282208 - ORR1C1 LTR MaLR 0 378 90 1 963 1440 256 52 91 chr11 49561652 49561695 -72282161 - RMER19C LTR ERVK 0 611 578 1 963 964 79 58 0 chr11 49561695 49561834 -72282022 - B1_Mus1 SINE Alu 0 148 2 1 963 1440 256 52 91 chr11 49561834 49562254 -72281602 - RMER19C LTR ERVK -34 577 166 1 963 462 129 0 0 chr11 49562258 49562328 -72281528 + RMER19B LTR ERVK 1 70 -832 1 963 1641 31 5 0 chr11 49562388 49562580 -72281276 - B2_Mm1t SINE B2 0 193 1 1 963 869 187 17 18 chr11 49562582 49562768 -72281088 - RLTR25B LTR ERVK -753 350 157 1 963 1245 244 69 19 chr11 49563138 49563680 -72280176 + L1M4 LINE L1 5174 5749 -434 1 963 360 0 0 0 chr11 49563682 49563722 -72280134 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 1 963 323 298 19 19 chr11 49563947 49564053 -72279803 + CT-rich Low_complexity Low_complexity 4 109 0 1 963 290 239 101 50 chr11 49564300 49564419 -72279437 - MLT1A0 LTR MaLR -32 333 209 1 963 254 388 25 0 chr11 49564924 49565045 -72278811 - MER68 LTR ERVL -7 556 433 1 963 660 156 109 0 chr11 49565589 49565696 -72278160 + B1_Mus1 SINE Alu 6 123 -25 1 963 189 0 0 0 chr11 49565696 49565717 -72278139 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 963 660 156 109 0 chr11 49565717 49565737 -72278119 + B1_Mus1 SINE Alu 124 146 -2 1 963 452 128 13 0 chr11 49565746 49565824 -72278032 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 1 963 937 219 48 24 chr11 49565829 49566039 -72277817 + B3 SINE B2 2 216 0 1 963 1221 106 71 0 chr11 49566053 49566223 -72277633 - B2_Mm2 SINE B2 -12 183 2 1 963 765 242 104 25 chr11 49566354 49566595 -72277261 + Lx7 LINE L1 6914 7173 -523 1 963 251 239 29 29 chr11 49566618 49566687 -72277169 - RLTR18B LTR ERVK -443 69 1 1 963 423 0 0 0 chr11 49567622 49567669 -72276187 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 963 940 168 207 0 chr11 49568030 49568209 -72275647 + B3 SINE B2 1 216 0 1 963 690 105 0 0 chr11 49569650 49569745 -72274111 + B1_Mur4 SINE Alu 47 141 -9 1 963 941 172 57 33 chr11 49570334 49570376 -72273480 + B3 SINE B2 1 44 -172 1 963 1215 62 0 0 chr11 49570376 49570522 -72273334 + B1_Mus2 SINE Alu 2 147 0 1 963 941 172 57 33 chr11 49570522 49570690 -72273166 + B3 SINE B2 45 216 0 1 963 290 222 0 5 chr11 49570701 49570774 -72273082 - L1M2 LINE L1 -827 5476 5407 1 963 309 307 68 79 chr11 49570776 49570846 -72273010 - L1MD LINE L1 -815 5331 5269 1 963 507 33 0 0 chr11 49570846 49570907 -72272949 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 963 309 307 68 79 chr11 49570907 49571013 -72272843 - L1MD LINE L1 -878 5268 5158 1 963 293 244 64 0 chr11 49571013 49571091 -72272765 - PB1D10 SINE Alu -34 83 1 1 963 242 398 0 0 chr11 49571663 49571756 -72272100 - RMER15 LTR ERVL -106 469 377 1 963 1569 241 119 9 chr11 49571760 49572213 -72271643 - Lx8 LINE L1 -237 7236 6734 1 963 251 194 0 77 chr11 49572230 49572308 -72271548 - B3 SINE B2 0 216 145 1 963 802 193 31 6 chr11 49572310 49572472 -72271384 - Lx8 LINE L1 -1064 6409 6244 1 963 1087 236 44 28 chr11 49572552 49572800 -72271056 - B4A SINE B4 0 292 41 1 963 2370 165 44 20 chr11 49572806 49572924 -72270932 + MTC LTR MaLR 3 123 -298 1 963 339 25 0 0 chr11 49572924 49572964 -72270892 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 1 963 2370 165 44 20 chr11 49572964 49573177 -72270679 + MTC LTR MaLR 124 350 -71 1 963 1441 179 141 32 chr11 49573177 49573368 -72270488 - RMER17C LTR ERVK 0 410 176 1 963 330 26 0 0 chr11 49573368 49573407 -72270449 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 963 1441 179 141 32 chr11 49573407 49573585 -72270271 - RMER17C LTR ERVK -235 175 2 1 963 2370 165 44 20 chr11 49573585 49573661 -72270195 + MTC LTR MaLR 351 418 -3 1 963 258 56 0 0 chr11 49573972 49574008 -72269848 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 963 693 311 59 31 chr11 49574083 49574202 -72269654 + MLT1C LTR MaLR 200 319 -148 1 963 459 0 0 0 chr11 49574202 49574253 -72269603 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 963 693 311 59 31 chr11 49574253 49574389 -72269467 + MLT1C LTR MaLR 320 462 -5 1 963 730 276 103 42 chr11 49575022 49575283 -72268573 - B4A SINE B4 -14 278 2 1 963 282 298 52 37 chr11 49575700 49575836 -72268020 + YREP_Mm Unknown Unknown 159 296 -1516 1 963 586 290 8 0 chr11 49575725 49575856 -72268000 - ID_B1 SINE B4 -11 213 82 1 963 465 209 9 26 chr11 49575897 49576010 -72267846 - PB1D10 SINE Alu -1 116 6 1 963 884 186 28 0 chr11 49576263 49576408 -72267448 + B1_Mur3 SINE Alu 1 149 0 1 963 244 139 23 0 chr11 49576493 49576536 -72267320 - RMER21A LTR ERV1 -261 686 643 1 963 246 32 0 0 chr11 49576568 49576599 -72267257 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 963 235 284 24 24 chr11 49577867 49577950 -72265906 - MIRc SINE MIR -101 167 85 1 963 241 250 0 14 chr11 49578111 49578180 -72265676 + CT-rich Low_complexity Low_complexity 1 68 0 1 963 357 24 0 0 chr11 49578908 49578950 -72264906 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 963 414 0 0 0 chr11 49578950 49578995 -72264861 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 963 907 221 11 11 chr11 49579005 49579188 -72264668 - B3 SINE B2 -32 184 2 1 963 782 265 69 87 chr11 49579244 49579533 -72264323 - B4A SINE B4 -1 291 8 1 963 903 270 202 3 chr11 49579952 49580268 -72263588 + MTEa LTR MaLR 1 379 0 1 963 231 333 11 22 chr11 49580407 49580499 -72263357 + MLT1E1A LTR MaLR 581 671 -9 1 963 657 280 29 73 chr11 49580595 49580911 -72262945 - MER113 DNA MER1_type -50 471 170 1 963 600 192 32 24 chr11 49580958 49581081 -72262775 - MTEa LTR MaLR 0 379 256 1 963 2060 115 120 53 chr11 49581081 49581265 -72262591 + ORR1B1 LTR MaLR 1 226 -168 1 963 1713 21 0 0 chr11 49581265 49581457 -72262399 + B2_Mm1a SINE B2 2 193 0 1 963 2060 115 120 53 chr11 49581457 49581631 -72262225 + ORR1B1 LTR MaLR 227 383 -11 1 963 1016 219 64 43 chr11 49581642 49581876 -72261980 - MTEa LTR MaLR -140 239 1 1 963 203 114 23 0 chr11 49582038 49582082 -72261774 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 1 963 1274 81 23 0 chr11 49582097 49582271 -72261585 - B2_Mm2 SINE B2 -9 186 9 1 963 1203 68 0 0 chr11 49582284 49582431 -72261425 - B1_Mus1 SINE Alu 0 148 2 1 963 831 141 7 15 chr11 49582720 49582857 -72260999 - B1_Mus2 SINE Alu -10 137 2 1 963 454 301 81 46 chr11 49582965 49583129 -72260727 + B3A SINE B2 9 180 -18 1 963 441 0 0 0 chr11 49583129 49583178 -72260678 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 963 628 299 48 22 chr11 49583191 49583420 -72260436 + MER2 DNA MER2_type 94 328 -17 1 963 687 84 0 0 chr11 49584075 49584170 -72259686 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1 963 1114 52 0 7 chr11 49584170 49584306 -72259550 - B1_Mus1 SINE Alu -10 138 4 2 963 1044 174 5 16 chr11 49584416 49584603 -72259253 - B2_Mm2 SINE B2 -9 186 2 2 963 438 20 0 0 chr11 49585208 49585259 -72258597 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 963 289 196 0 0 chr11 49585269 49585315 -72258541 - B3A SINE B2 -120 78 33 2 963 700 140 17 34 chr11 49585317 49585435 -72258421 - B1_Mur3 SINE Alu -31 118 3 2 963 674 231 118 6 chr11 49585922 49586083 -72257773 + ORR1E LTR MaLR 1 179 -180 2 963 432 305 155 7 chr11 49586100 49586255 -72257601 + LTR33 LTR ERVL 5 182 -333 2 963 315 0 0 0 chr11 49586618 49586653 -72257203 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 963 228 182 0 0 chr11 49586914 49586958 -72256898 + C-rich Low_complexity Low_complexity 4 47 0 2 963 793 218 133 75 chr11 49587186 49587505 -72256351 + RMER4B LTR ERVK 317 576 -9 2 963 187 99 40 66 chr11 49587509 49587585 -72256271 + A-rich Low_complexity Low_complexity 2 75 0 2 963 1206 54 0 13 chr11 49588158 49588307 -72255549 + B1_Mus1 SINE Alu 2 148 0 2 963 1090 60 7 7 chr11 49588865 49589017 -72254839 + (TTCTCC)n Simple_repeat Simple_repeat 4 155 0 2 963 363 97 41 51 chr11 49589360 49589458 -72254398 + G-rich Low_complexity Low_complexity 6 102 0 2 963 307 127 32 0 chr11 49590511 49590574 -72253282 + GA-rich Low_complexity Low_complexity 2 66 0 2 963 33 0 0 0 chr11 49591152 49591185 -72252671 + AT_rich Low_complexity Low_complexity 1 33 0 2 963 407 161 17 17 chr11 49591189 49591309 -72252547 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 963 613 226 101 79 chr11 49591309 49591487 -72252369 - B3A SINE B2 -16 182 1 2 963 958 216 96 48 chr11 49591753 49592045 -72251811 - MTD LTR MaLR -13 406 101 2 963 240 326 47 50 chr11 49592120 49592283 -72251573 + MIRc SINE MIR 17 181 -87 2 963 427 236 19 0 chr11 49593157 49593263 -72250593 - B1F SINE Alu 0 149 42 2 963 254 0 0 159 chr11 49593266 49593392 -72250464 + (CTCTG)n Simple_repeat Simple_repeat 5 110 0 2 963 254 207 17 33 chr11 49593393 49593453 -72250403 - PB1D9 SINE Alu -61 59 1 2 963 520 245 140 35 chr11 49595203 49595387 -72248469 + ID_B1 SINE B4 55 248 -44 2 963 511 277 227 33 chr11 49595601 49595900 -72247956 - RMER15 LTR ERVL -10 565 209 2 963 459 0 0 0 chr11 49596072 49596123 -72247733 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 963 2159 140 79 5 chr11 49596728 49597095 -72246761 + ORR1B1 LTR MaLR 1 394 0 2 963 290 224 75 50 chr11 49597141 49597221 -72246635 + ID4_ SINE ID 1 82 -1 2 963 468 0 0 0 chr11 49597903 49597955 -72245901 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 963 188 67 0 32 chr11 49598050 49598081 -72245775 + (CAT)n Simple_repeat Simple_repeat 2 31 0 2 963 202 97 32 0 chr11 49598082 49598113 -72245743 + (TCC)n Simple_repeat Simple_repeat 2 33 0 2 963 216 0 0 0 chr11 49598114 49598138 -72245718 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 963 605 202 0 35 chr11 49598139 49598252 -72245604 - B1_Mur1 SINE Alu -14 135 27 2 963 216 0 0 0 chr11 49598706 49598730 -72245126 + (T)n Simple_repeat Simple_repeat 1 24 0 2 963 240 327 35 26 chr11 49598748 49598861 -72244995 + MER102c DNA MER1_type 207 320 -11 2 963 326 46 30 30 chr11 49599249 49599316 -72244540 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 2 963 681 227 143 10 chr11 49599403 49599599 -72244257 - MLT1A0 LTR MaLR 0 365 144 2 963 601 228 87 0 chr11 49599609 49599736 -72244120 - B1_Mur1 SINE Alu -7 142 5 2 963 683 243 35 87 chr11 49600171 49600269 -72243587 + B4 SINE B4 3 220 -72 2 963 859 109 15 23 chr11 49600269 49600401 -72243455 + B1_Mus2 SINE Alu 11 141 -6 2 963 401 314 102 0 chr11 49600425 49600539 -72243317 + B4A SINE B4 86 211 -81 2 963 1608 212 113 8 chr11 49600539 49600910 -72242946 - MTD LTR MaLR 0 419 10 2 963 267 103 0 0 chr11 49600928 49600967 -72242889 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 963 725 213 21 14 chr11 49601090 49601233 -72242623 + B1_Mur2 SINE Alu 2 145 -4 2 963 397 238 386 39 chr11 49601233 49601347 -72242509 - B3 SINE B2 -10 206 45 2 963 1309 139 46 14 chr11 49601347 49601565 -72242291 + URR1B DNA MER1_type 1 225 0 2 963 397 238 386 39 chr11 49601565 49601603 -72242253 - B3 SINE B2 -172 44 1 2 963 948 277 94 0 chr11 49601700 49602007 -72241849 - ORR1E LTR MaLR -23 336 1 2 963 385 288 5 21 chr11 49602007 49602114 -72241742 - ORR1E-int LTR MaLR -53 1527 1456 2 963 1339 231 109 21 chr11 49602108 49602448 -72241408 - ORR1D1 LTR MaLR -4 370 1 2 963 1799 308 146 52 chr11 49602448 49603768 -72240088 - MTE-int LTR MaLR -137 1443 1 2 963 277 315 28 30 chr11 49603916 49604032 -72239824 - ORR1D1 LTR MaLR -282 112 1 2 963 260 347 86 40 chr11 49605477 49605651 -72238205 - MLT1A0 LTR MaLR -224 184 3 2 963 200 111 28 0 chr11 49606299 49606335 -72237521 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2 963 195 69 0 0 chr11 49606489 49606518 -72237338 + (A)n Simple_repeat Simple_repeat 1 29 0 2 963 396 0 0 0 chr11 49607132 49607176 -72236680 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 963 603 112 0 0 chr11 49607176 49607283 -72236573 + (GA)n Simple_repeat Simple_repeat 2 108 0 2 963 389 296 44 7 chr11 49607319 49607455 -72236401 - MIR SINE MIR -75 187 47 2 963 28 0 0 0 chr11 49608922 49608950 -72234906 + GC_rich Low_complexity Low_complexity 1 28 0 2 963 999 289 59 69 chr11 49609866 49610240 -72233616 - MTE2a LTR MaLR 0 419 35 2 963 585 220 8 17 chr11 49611829 49611949 -72231907 - B3A SINE B2 -79 119 1 2 963 363 346 14 29 chr11 49611951 49612091 -72231765 - MER63A DNA AcHobo -68 142 5 2 963 396 244 0 35 chr11 49612104 49612189 -72231667 - B3A SINE B2 -115 83 2 2 963 261 349 72 24 chr11 49612624 49612793 -72231063 - L2b LINE L2 0 3387 3223 2 963 205 350 87 59 chr11 49613291 49613510 -72230346 - MIR SINE MIR -20 242 18 2 963 535 234 143 41 chr11 49614051 49614198 -72229658 - RSINE1 SINE B4 0 165 4 2 963 268 296 43 94 chr11 49614301 49614439 -72229417 + MER2 DNA MER2_type 213 343 -2 2 963 248 200 48 96 chr11 49614605 49614688 -72229168 + MER72B LTR ERV1 633 711 -57 2 963 228 227 135 67 chr11 49615502 49615606 -72228250 + L1MEc LINE L1 795 905 -5495 2 963 267 196 0 38 chr11 49615771 49615812 -72228044 + PB1D9 SINE Alu 1 39 -81 2 963 634 297 189 16 chr11 49615812 49616035 -72227821 + B4A SINE B4 1 285 -7 2 963 1444 278 67 98 chr11 49616035 49616055 -72227801 - MER44C DNA MER2_type -100 633 613 2 963 297 0 0 0 chr11 49616055 49616088 -72227768 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 963 1444 278 67 98 chr11 49616088 49616720 -72227136 - MER44C DNA MER2_type -121 612 1 2 963 1172 55 0 14 chr11 49616914 49617061 -72226795 - B1_Mus1 SINE Alu -1 147 3 2 963 404 224 12 150 chr11 49617404 49617577 -72226279 - B3 SINE B2 -2 214 66 2 963 228 200 0 0 chr11 49617775 49617815 -72226041 + ID SINE ID 22 61 -163 2 963 374 183 14 0 chr11 49617832 49617903 -72225953 + MTD LTR MaLR 19 90 -329 2 963 206 122 0 58 chr11 49618347 49618399 -72225457 + T-rich Low_complexity Low_complexity 3 51 0 2 963 1145 177 58 0 chr11 49618674 49618900 -72224956 + RLTR42 LTR ERVK 1 239 0 2 963 312 226 47 23 chr11 49619048 49619134 -72224722 + L1MA9 LINE L1 6013 6100 -212 2 963 296 172 394 0 chr11 49619503 49619602 -72224254 + B1_Mus2 SINE Alu 5 142 -7 2 963 817 249 14 41 chr11 49620247 49620465 -72223391 - MER2 DNA MER2_type -48 297 86 2 963 524 299 47 27 chr11 49620549 49620697 -72223159 - B4 SINE B4 -62 230 80 2 963 297 0 0 0 chr11 49620697 49620730 -72223126 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 963 528 93 0 0 chr11 49620759 49620834 -72223022 + (TTA)n Simple_repeat Simple_repeat 1 75 0 2 963 605 223 74 0 chr11 49621678 49621799 -72222057 + B1F SINE Alu 12 141 -8 2 963 804 145 26 58 chr11 49621974 49622128 -72221728 - B1_Mur4 SINE Alu -1 149 1 2 963 592 323 80 4 chr11 49622161 49622425 -72221431 + B4A SINE B4 5 288 -4 2 963 244 280 13 13 chr11 49622435 49622511 -72221345 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 963 390 257 39 29 chr11 49622955 49623059 -72220797 - MLT1A1 LTR MaLR -4 404 300 2 963 593 184 0 9 chr11 49623348 49623458 -72220398 + B4A SINE B4 125 233 -59 2 963 405 0 0 0 chr11 49623617 49623662 -72220194 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 963 985 228 9 28 chr11 49623710 49623922 -72219934 + B3 SINE B2 4 211 -5 2 963 1567 57 0 10 chr11 49624175 49624369 -72219487 - B2_Mm1a SINE B2 -1 192 1 2 963 235 347 10 10 chr11 49625553 49625652 -72218204 + Kanga1c DNA Tc2 134 232 -497 2 963 269 51 0 25 chr11 49625741 49625781 -72218075 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 2 963 810 234 92 24 chr11 49626436 49626642 -72217214 - MER2 DNA MER2_type -28 317 98 2 963 2604 55 3 38 chr11 49626643 49626982 -72216874 - ORR1A2 LTR MaLR 0 327 1 2 963 279 333 0 0 chr11 49627054 49627140 -72216716 - ID4 SINE ID -58 94 9 2 963 265 204 173 8 chr11 49627235 49627336 -72216520 - ID4_ SINE ID -36 116 4 2 963 671 246 33 84 chr11 49627812 49628025 -72215831 + B3 SINE B2 1 202 -14 2 963 290 269 143 39 chr11 49628212 49628401 -72215455 - MIRb SINE MIR -38 230 5 2 963 319 197 141 0 chr11 49629697 49629768 -72214088 + MER44B DNA MER2_type 32 112 -438 2 963 379 136 0 0 chr11 49629887 49629946 -72213910 - HAL1-3A_ME LINE L1 -824 2034 1976 2 963 217 242 16 0 chr11 49629946 49630008 -72213848 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 963 956 229 50 0 chr11 49630014 49630215 -72213641 - B3 SINE B2 -5 211 1 3 963 623 249 54 178 chr11 49630217 49630476 -72213380 - B4A SINE B4 -64 228 2 3 963 741 258 117 46 chr11 49630982 49631222 -72212634 - MER2 DNA MER2_type -3 342 86 3 963 215 152 22 0 chr11 49631231 49631277 -72212579 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 963 236 324 0 0 chr11 49631280 49631351 -72212505 - ID4_ SINE ID -11 72 2 3 963 394 243 56 56 chr11 49631373 49631517 -72212339 - B1F SINE Alu -5 144 1 3 963 369 62 0 0 chr11 49632810 49632858 -72210998 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 963 526 266 70 31 chr11 49632870 49632998 -72210858 - RSINE1 SINE B4 -29 136 4 3 963 379 310 86 51 chr11 49633482 49633679 -72210177 + L1M5 LINE L1 4349 4552 -1594 3 963 525 216 48 10 chr11 49633701 49633804 -72210052 - PB1D7 SINE Alu -8 112 6 3 963 1113 154 26 37 chr11 49633857 49634046 -72209810 + B2_Mm2 SINE B2 8 194 -1 3 963 185 178 22 0 chr11 49634046 49634091 -72209765 + GA-rich Low_complexity Low_complexity 1 46 0 3 963 470 121 154 0 chr11 49634096 49634187 -72209669 + B1_Mur3 SINE Alu 45 149 0 3 963 882 278 38 5 chr11 49634298 49634508 -72209348 + B4 SINE B4 3 219 -73 3 963 665 220 66 75 chr11 49634590 49634816 -72209040 + B4A SINE B4 69 292 0 3 963 432 0 0 0 chr11 49634887 49634935 -72208921 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 963 180 175 0 111 chr11 49635251 49635296 -72208560 - MIRc SINE MIR -120 148 109 3 963 684 54 0 0 chr11 49635521 49635614 -72208242 + (TG)n Simple_repeat Simple_repeat 1 93 0 3 963 272 137 20 0 chr11 49635614 49635665 -72208191 + GA-rich Low_complexity Low_complexity 2 53 0 3 963 1320 239 100 21 chr11 49635770 49636139 -72207717 - MTD LTR MaLR -22 397 20 3 963 535 205 143 0 chr11 49636489 49636601 -72207255 + RSINE1 SINE B4 3 130 -35 3 963 505 245 109 6 chr11 49638134 49638290 -72205566 - RMER15 LTR ERVL 0 575 404 3 963 1115 76 104 12 chr11 49639247 49639420 -72204436 - B2_Mm2 SINE B2 -1 194 6 3 963 188 291 200 12 chr11 49639996 49640076 -72203780 + MIRc SINE MIR 163 257 -11 3 963 216 241 25 25 chr11 49640476 49640557 -72203299 + CT-rich Low_complexity Low_complexity 3 83 0 3 963 737 319 201 28 chr11 49641031 49641182 -72202674 + Charlie1a DNA MER1_type 539 713 -742 3 963 225 0 0 0 chr11 49641182 49641207 -72202649 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 963 737 270 182 29 chr11 49641207 49641611 -72202245 + Charlie1a DNA MER1_type 714 1191 -264 3 963 385 323 50 25 chr11 49641611 49641770 -72202086 + RSINE1 SINE B4 3 165 0 3 963 737 270 182 29 chr11 49641770 49641807 -72202049 + Charlie1a DNA MER1_type 1192 1226 -229 3 963 620 69 0 54 chr11 49641826 49641918 -72201938 - B1_Mur4 SINE Alu -2 148 62 3 963 2188 181 40 23 chr11 49641962 49642445 -72201411 - RLTR28 LTR ERVL 0 524 1 3 963 392 261 78 93 chr11 49642445 49642582 -72201274 + Charlie1a DNA MER1_type 1194 1330 -125 3 963 938 133 15 0 chr11 49642582 49642717 -72201139 - B1_Mur2 SINE Alu -12 137 1 3 963 392 261 78 93 chr11 49642717 49642836 -72201020 + Charlie1a DNA MER1_type 1331 1446 -9 3 963 222 324 49 0 chr11 49643531 49643626 -72200230 - L2c LINE L2 -25 3350 3244 3 963 736 222 85 12 chr11 49643690 49643854 -72200002 + B4 SINE B4 81 256 -36 3 963 462 106 0 66 chr11 49643863 49643984 -72199872 + CT-rich Low_complexity Low_complexity 1 113 0 3 963 279 0 0 0 chr11 49643994 49644025 -72199831 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 963 883 335 105 21 chr11 49644599 49645029 -72198827 - MER21B LTR ERV1 -375 488 23 3 963 753 258 53 21 chr11 49645038 49645295 -72198561 - MTEa LTR MaLR -4 375 45 3 963 441 0 0 0 chr11 49645295 49645344 -72198512 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 963 753 266 88 31 chr11 49645344 49645381 -72198475 - MTEa LTR MaLR -335 44 8 3 963 697 231 14 27 chr11 49646692 49646839 -72197017 - RSINE1 SINE B4 -17 148 4 3 963 464 344 156 51 chr11 49647024 49647380 -72196476 - MER21B LTR ERV1 -150 713 311 3 963 1159 68 0 39 chr11 49647380 49647533 -72196323 - B1_Mus1 SINE Alu 0 148 2 3 963 464 344 156 51 chr11 49647533 49647626 -72196230 - MER21B LTR ERV1 -553 310 217 3 963 223 135 19 19 chr11 49647643 49647696 -72196160 + T-rich Low_complexity Low_complexity 6 58 0 3 963 1075 81 0 33 chr11 49647696 49647849 -72196007 - B1_Mus1 SINE Alu 0 148 1 3 963 250 281 85 110 chr11 49647884 49648048 -72195808 - MER77 LTR ERVL -394 213 54 3 963 275 211 18 0 chr11 49648349 49648406 -72195450 - B1_Mur1 SINE Alu -18 131 74 3 963 255 211 197 0 chr11 49648429 49648500 -72195356 - MTE2b LTR MaLR -5 374 290 3 963 1135 208 9 28 chr11 49648529 49648742 -72195114 - MTE2b LTR MaLR -163 216 8 3 963 227 103 26 0 chr11 49649557 49649596 -72194260 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 963 305 232 73 10 chr11 49649601 49649697 -72194159 + PB1D7 SINE Alu 1 102 -18 3 963 243 0 0 0 chr11 49649701 49649728 -72194128 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 3 963 538 270 57 75 chr11 49649849 49650061 -72193795 - B3 SINE B2 0 216 9 3 963 215 79 26 0 chr11 49650316 49650354 -72193502 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 963 709 120 12 155 chr11 49650781 49650949 -72192907 - B1_Mur4 SINE Alu -2 148 5 3 963 423 252 171 7 chr11 49651052 49651204 -72192652 - ID_B1 SINE B4 -46 178 2 3 963 518 305 48 12 chr11 49652294 49652460 -72191396 - MLT1A0 LTR MaLR -68 297 126 3 963 562 216 18 9 chr11 49652454 49652566 -72191290 + B1_Mus1 SINE Alu 29 141 -7 3 963 210 150 0 0 chr11 49652570 49652610 -72191246 + (C)n Simple_repeat Simple_repeat 1 40 0 3 963 577 301 66 59 chr11 49652661 49652950 -72190906 - B4A SINE B4 0 292 2 3 963 997 189 77 0 chr11 49653324 49653520 -72190336 - B3 SINE B2 -5 211 1 3 963 446 250 132 0 chr11 49653764 49653908 -72189948 - L1MC3 LINE L1 -340 7445 7283 3 963 317 172 16 37 chr11 49653931 49654037 -72189819 - Lx LINE L1 0 7000 6896 3 963 853 141 37 6 chr11 49654061 49654225 -72189631 - Lx LINE L1 -4 6650 6482 3 963 619 269 89 69 chr11 49654359 49654650 -72189206 - L1MC3 LINE L1 -867 6918 6622 3 963 349 353 201 43 chr11 49654655 49655054 -72188802 - HAL1 LINE L1 -1484 1023 562 3 963 546 16 0 0 chr11 49655346 49655409 -72188447 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 963 282 169 0 0 chr11 49655844 49655909 -72187947 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 963 569 270 181 20 chr11 49655913 49656117 -72187739 - B4 SINE B4 -4 288 52 3 963 687 338 58 60 chr11 49656246 49656611 -72187245 - MTEb LTR MaLR -14 365 2 3 963 255 184 0 0 chr11 49656613 49656651 -72187205 - BC1_Mm scRNA scRNA -113 39 2 3 963 225 0 0 0 chr11 49656694 49656719 -72187137 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 963 477 71 0 0 chr11 49656719 49656789 -72187067 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 963 191 325 107 41 chr11 49656937 49657059 -72186797 - MIRb SINE MIR -87 181 52 3 963 441 245 89 64 chr11 49657176 49657333 -72186523 - L1M5 LINE L1 -607 5572 5412 3 963 195 336 98 30 chr11 49657427 49657559 -72186297 + L2 LINE L2 2721 2861 -558 3 963 1044 240 232 9 chr11 49658696 49659037 -72184819 + MTD LTR MaLR 3 419 0 3 963 216 97 0 0 chr11 49660261 49660292 -72183564 + (CGG)n Simple_repeat Simple_repeat 3 33 0 3 963 180 111 0 0 chr11 49660358 49660385 -72183471 + (CGGGG)n Simple_repeat Simple_repeat 4 30 0 3 963 240 335 114 38 chr11 49661652 49661888 -72181968 - L2b LINE L2 -7 3368 3115 3 963 240 234 48 123 chr11 49661946 49662092 -72181764 - MER102a DNA MER1_type -123 207 73 3 963 254 295 143 1 chr11 49662271 49662381 -72181475 - MIRc SINE MIR -129 147 25 3 963 26 0 0 0 chr11 49662821 49662847 -72181009 + AT_rich Low_complexity Low_complexity 1 26 0 3 963 210 250 12 12 chr11 49663185 49663270 -72180586 + (TTTG)n Simple_repeat Simple_repeat 4 88 0 3 963 539 247 0 58 chr11 49663270 49663402 -72180454 - B1F SINE Alu 0 120 1 3 963 231 250 73 42 chr11 49663708 49663804 -72180052 - Tigger1 DNA MER2_type -1852 566 468 3 963 320 291 42 19 chr11 49664178 49664318 -72179538 - L1MD2 LINE L1 -70 6289 6079 3 963 250 248 69 69 chr11 49664316 49664446 -72179410 - L1MD2 LINE L1 -215 6144 6015 3 963 315 329 197 7 chr11 49664602 49664749 -72179107 - L1MD2 LINE L1 -525 5834 5660 3 963 317 189 0 0 chr11 49664982 49665035 -72178821 + ID4 SINE ID 20 72 -11 3 963 197 364 116 12 chr11 49665348 49665512 -72178344 + MIRb SINE MIR 14 194 -74 3 963 297 200 62 0 chr11 49666226 49666291 -72177565 - ID4_ SINE ID -11 72 4 3 963 195 274 18 73 chr11 49666298 49666353 -72177503 - L2c LINE L2 -78 3309 3258 3 963 319 171 55 12 chr11 49667355 49667434 -72176422 + B3 SINE B2 20 94 -104 3 963 868 158 14 0 chr11 49668628 49668767 -72175089 + B1_Mur3 SINE Alu 2 142 -7 3 963 323 228 37 25 chr11 49669729 49669810 -72174046 + ID4 SINE ID 2 83 0 3 963 615 246 4 0 chr11 49669811 49670069 -72173787 + (TA)n Simple_repeat Simple_repeat 1 259 0 3 963 1050 75 0 104 chr11 49670327 49670490 -72173366 + B1_Mus1 SINE Alu 3 148 0 3 963 855 304 83 32 chr11 49670602 49671074 -72172782 + MLT1D LTR MaLR 1 496 -9 3 963 235 345 17 58 chr11 49671885 49672005 -72171851 + MIR SINE MIR 33 147 -61 3 963 905 300 124 47 chr11 49672510 49673108 -72170748 + L1MEg LINE L1 323 966 -5118 3 963 225 286 52 0 chr11 49673111 49673188 -72170668 - MLT1E2 LTR MaLR 0 627 547 3 963 857 157 0 7 chr11 49673728 49673869 -72169987 + B1_Mur4 SINE Alu 11 150 0 3 963 261 243 149 26 chr11 49674064 49674178 -72169678 + HAL1 LINE L1 1513 1640 -867 3 963 1337 173 269 15 chr11 49675055 49675389 -72168467 - MTD LTR MaLR 0 419 1 3 963 189 215 28 9 chr11 49675389 49675497 -72168359 + (CATA)n Simple_repeat Simple_repeat 3 112 0 3 963 409 248 63 16 chr11 49675503 49675630 -72168226 - L1MA8 LINE L1 -58 6233 6101 4 963 489 266 71 14 chr11 49675630 49675771 -72168085 + B1_Mur2 SINE Alu 1 149 0 4 964 21 82 0 0 chr11 49677253 49677302 -72166554 + AT_rich Low_complexity Low_complexity 1 49 0 4 964 200 196 39 19 chr11 49677370 49677422 -72166434 + (CCCTAA)n Simple_repeat Simple_repeat 2 54 0 4 964 272 176 0 14 chr11 49677447 49677516 -72166340 + (CCCTAA)n Simple_repeat Simple_repeat 1 68 0 4 964 323 282 0 0 chr11 49677815 49677886 -72165970 - ID4_ SINE ID -12 71 1 4 964 1317 186 240 0 chr11 49678234 49678246 -72165610 + MTD LTR MaLR 1 12 -407 4 964 198 0 0 0 chr11 49678246 49678268 -72165588 + (TTG)n Simple_repeat Simple_repeat 2 23 0 4 964 1317 186 240 0 chr11 49678268 49678593 -72165263 + MTD LTR MaLR 13 418 -1 4 964 733 273 117 51 chr11 49678978 49679252 -72164604 - B4A SINE B4 0 292 1 4 964 415 217 138 9 chr11 49679381 49679497 -72164359 - B1F SINE Alu -18 131 1 4 964 873 88 0 8 chr11 49680070 49680196 -72163660 - B2_Mm2 SINE B2 -70 125 1 4 964 24 32 0 0 chr11 49680217 49680248 -72163608 + AT_rich Low_complexity Low_complexity 1 31 0 4 964 298 250 238 9 chr11 49680603 49680708 -72163148 - Ricksha DNA MuDR -2458 788 660 4 964 341 288 231 14 chr11 49680722 49680930 -72162926 - Ricksha DNA MuDR -2625 621 369 4 964 307 308 206 40 chr11 49681177 49681756 -72162100 - L2 LINE L2 -559 2860 2186 4 964 812 129 21 28 chr11 49681974 49682118 -72161738 + B1_Mus2 SINE Alu 5 147 0 4 964 536 135 0 50 chr11 49683342 49683443 -72160413 - B1_Mus1 SINE Alu -21 127 32 4 964 1220 171 54 0 chr11 49683715 49683920 -72159936 - B3 SINE B2 0 216 1 4 964 223 304 25 12 chr11 49683963 49684043 -72159813 - ID4 SINE ID 0 83 3 4 964 366 196 86 11 chr11 49684598 49684691 -72159165 + PB1D10 SINE Alu 18 117 0 4 964 222 113 0 54 chr11 49685114 49685170 -72158686 + T-rich Low_complexity Low_complexity 1 53 0 4 964 316 262 12 0 chr11 49685173 49685253 -72158603 - ID4_ SINE ID 0 83 3 4 964 602 268 150 9 chr11 49685799 49686032 -72157824 + MER2 DNA MER2_type 9 274 -71 4 964 450 195 0 24 chr11 49686545 49686629 -72157227 - PB1D9 SINE Alu -32 88 7 4 964 245 281 10 110 chr11 49686547 49686647 -72157209 - MT2B LTR ERVL -360 241 152 4 964 38 101 0 0 chr11 49689061 49689190 -72154666 + AT_rich Low_complexity Low_complexity 1 129 0 4 964 1119 58 0 0 chr11 49689253 49689390 -72154466 + B1_Mus2 SINE Alu 2 138 -9 4 964 315 0 0 0 chr11 49689390 49689425 -72154431 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 964 300 111 0 0 chr11 49689716 49689770 -72154086 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 964 607 267 63 25 chr11 49692140 49692378 -72151478 + B4A SINE B4 24 270 -22 4 964 3388 30 2 5 chr11 49694116 49694513 -72149343 + MTA_Mm LTR MaLR 1 396 0 4 964 33 0 0 0 chr11 49697348 49697381 -72146475 + AT_rich Low_complexity Low_complexity 1 33 0 4 964 236 125 62 0 chr11 49700032 49700096 -72143760 + (CCTCG)n Simple_repeat Simple_repeat 2 69 0 4 964 1196 259 61 29 chr11 49700944 49701290 -72142566 - MTEa LTR MaLR -2 377 21 4 964 380 256 52 67 chr11 49701621 49701755 -72142101 + MLT1A1 LTR MaLR 265 396 -12 4 964 249 253 72 0 chr11 49702560 49702643 -72141213 - L1MC4 LINE L1 -29 8013 7925 4 964 1166 204 23 14 chr11 49703066 49703280 -72140576 + B3 SINE B2 1 216 0 4 964 881 109 0 23 chr11 49703391 49703522 -72140334 + B1_Mm SINE Alu 3 130 -17 4 964 216 67 0 0 chr11 49703522 49703552 -72140304 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 4 964 3460 70 0 0 chr11 49704206 49704635 -72139221 + L1_Mus1 LINE L1 6139 6567 0 4 964 1302 95 6 6 chr11 49704654 49704834 -72139022 + B2_Mm2 SINE B2 2 181 -14 4 964 234 137 78 0 chr11 49704872 49704923 -72138933 + B2_Mm2 SINE B2 47 101 -94 4 964 26 0 0 0 chr11 49704930 49704956 -72138900 + AT_rich Low_complexity Low_complexity 1 26 0 4 964 858 197 147 35 chr11 49705001 49705259 -72138597 + B4 SINE B4 2 288 -4 4 964 219 36 0 0 chr11 49705412 49705440 -72138416 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 964 1155 44 0 0 chr11 49705440 49705577 -72138279 - B1_Mus1 SINE Alu -10 138 2 4 964 601 158 17 0 chr11 49706720 49706840 -72137016 + CT-rich Low_complexity Low_complexity 1 122 0 4 964 553 154 67 0 chr11 49706840 49706944 -72136912 - PB1D10 SINE Alu -2 115 5 4 964 243 274 0 16 chr11 49706983 49707046 -72136810 + ID SINE ID 7 68 -156 4 964 231 335 25 32 chr11 49707159 49707316 -72136540 - L1ME3A LINE L1 -19 6154 5999 4 964 271 316 31 0 chr11 49707463 49707561 -72136295 - L1ME3A LINE L1 -393 5780 5680 4 964 705 316 154 40 chr11 49707621 49708171 -72135685 - MLT1E2 LTR MaLR 0 627 15 4 964 370 298 97 38 chr11 49708370 49708607 -72135249 + ORR1E LTR MaLR 4 254 -105 4 964 697 224 10 63 chr11 49708825 49709030 -72134826 - B3A SINE B2 -3 195 2 4 964 301 107 47 12 chr11 49709179 49709250 -72134606 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 964 363 78 0 0 chr11 49709250 49709301 -72134555 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 964 301 107 47 12 chr11 49709301 49709314 -72134542 + (TA)n Simple_repeat Simple_repeat 1 13 0 4 964 402 147 0 0 chr11 49709369 49709437 -72134419 + (TTC)n Simple_repeat Simple_repeat 2 69 0 4 964 285 299 45 56 chr11 49710185 49710383 -72133473 - MER45B DNA Tip100 -85 955 760 4 964 249 220 34 0 chr11 49710572 49710631 -72133225 + (CAGA)n Simple_repeat Simple_repeat 3 63 0 4 964 234 271 176 8 chr11 49710680 49710799 -72133057 - MTE-int LTR MaLR -978 602 464 4 964 477 0 0 0 chr11 49710817 49710870 -72132986 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 4 964 609 209 43 7 chr11 49710880 49711020 -72132836 - B1_Mur3 SINE Alu -2 147 3 4 964 412 281 47 0 chr11 49711020 49711139 -72132717 - MTE-int LTR MaLR -1090 490 366 4 964 450 236 28 19 chr11 49711165 49711269 -72132587 + B1F SINE Alu 29 133 -16 4 964 1314 148 148 24 chr11 49711269 49711573 -72132283 - ORR1A4 LTR MaLR 0 329 16 4 964 436 245 0 10 chr11 49711622 49711721 -72132135 + BC1_Mm scRNA scRNA 2 99 -53 4 964 1305 85 0 8 chr11 49711722 49711983 -72131873 + (GGGA)n Simple_repeat Simple_repeat 1 258 0 4 964 882 293 32 21 chr11 49711997 49712335 -72131521 - MTE-int LTR MaLR -1232 348 7 4 964 240 321 24 0 chr11 49712527 49712611 -72131245 - ORR1E LTR MaLR -223 136 51 4 964 270 0 0 0 chr11 49713531 49713561 -72130295 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 964 315 0 0 0 chr11 49713561 49713595 -72130261 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 964 183 226 343 19 chr11 49716271 49716379 -72127477 - MIR3 SINE MIR -65 143 1 4 964 320 287 25 39 chr11 49717163 49717309 -72126547 - L1MC4 LINE L1 -1191 6851 6671 4 964 297 235 50 20 chr11 49717347 49717447 -72126409 - L1MC4 LINE L1 -1359 6523 6421 4 964 255 259 80 22 chr11 49717543 49717681 -72126175 - L1MC4 LINE L1 -1635 6247 6102 4 964 256 336 0 16 chr11 49717815 49717939 -72125917 - L1MC4 LINE L1 -2040 5842 5721 4 964 21 0 0 0 chr11 49717956 49717977 -72125879 + AT_rich Low_complexity Low_complexity 1 21 0 4 964 267 114 0 0 chr11 49717977 49718021 -72125835 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 964 253 254 18 0 chr11 49718021 49718076 -72125780 - B3A SINE B2 -56 142 87 4 964 586 298 73 16 chr11 49718326 49718517 -72125339 - B4 SINE B4 -5 287 86 4 964 860 178 0 6 chr11 49718538 49718719 -72125137 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 964 32622 22 0 6 chr11 49718927 49724910 -72118946 - L1Md_T LINE L1 0 6582 643 4 964 890 246 15 15 chr11 49725222 49725420 -72118436 + B3A SINE B2 1 198 0 4 964 298 293 103 24 chr11 49725533 49725659 -72118197 - MLT1A1 LTR MaLR -4 404 269 4 964 297 0 0 0 chr11 49725697 49725730 -72118126 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 964 459 0 0 0 chr11 49725730 49725781 -72118075 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 964 1052 127 0 0 chr11 49725847 49725997 -72117859 + B2_Mm2 SINE B2 3 152 -43 4 964 680 211 7 34 chr11 49726079 49726226 -72117630 - B1_Mur1 SINE Alu -2 147 5 4 964 275 266 12 12 chr11 49726427 49726507 -72117349 - L1MC4 LINE L1 -2284 3930 3851 4 964 292 302 140 0 chr11 49727010 49727189 -72116667 - L1MC4 LINE L1 -4452 1763 1560 4 964 1156 140 130 0 chr11 49727490 49727690 -72116166 - URR1A DNA MER1_type 0 226 1 4 964 1046 69 0 40 chr11 49727746 49727760 -72116096 - B1_Mur4 SINE Alu 0 150 142 4 964 271 65 21 21 chr11 49727760 49727807 -72116049 + (TTCTG)n Simple_repeat Simple_repeat 4 50 0 4 964 1046 69 0 40 chr11 49727807 49727943 -72115913 - B1_Mur4 SINE Alu -9 141 6 4 964 610 274 59 89 chr11 49728803 49728854 -72115002 + L1M5 LINE L1 3211 3256 -2890 4 964 408 40 0 0 chr11 49728854 49728904 -72114952 + (CATA)n Simple_repeat Simple_repeat 4 53 0 4 964 610 274 59 89 chr11 49728904 49728921 -72114935 + L1M5 LINE L1 3257 3257 -2889 4 964 306 73 0 0 chr11 49728921 49728962 -72114894 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 4 964 610 274 59 89 chr11 49728962 49729038 -72114818 + L1M5 LINE L1 3257 3329 -2817 4 964 570 15 0 0 chr11 49729038 49729105 -72114751 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 964 610 274 59 89 chr11 49729105 49729330 -72114526 + L1M5 LINE L1 3330 3570 -2576 4 964 318 370 80 40 chr11 49729351 49729551 -72114305 + L1M5 LINE L1 5464 5671 -569 4 964 821 287 9 113 chr11 49729858 49730184 -72113672 + B4A SINE B4 1 292 0 4 964 291 79 0 0 chr11 49730265 49730303 -72113553 + MTC LTR MaLR 5 42 -379 4 964 384 183 0 27 chr11 49730296 49730369 -72113487 + MTC LTR MaLR 351 421 0 4 964 1160 65 0 0 chr11 49730777 49730916 -72112940 + B1_Mus1 SINE Alu 1 139 -9 4 964 207 0 0 0 chr11 49730916 49730939 -72112917 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 964 351 327 37 31 chr11 49731410 49731732 -72112124 - L1MA5 LINE L1 -1 6299 5976 4 964 414 0 0 0 chr11 49732766 49732812 -72111044 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 964 1070 246 85 0 chr11 49732812 49733060 -72110796 - B4A SINE B4 -23 269 1 4 964 625 290 61 86 chr11 49733243 49733605 -72110251 - MLT1A LTR MaLR -21 353 1 4 964 435 173 0 0 chr11 49733649 49733730 -72110126 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 964 528 278 142 77 chr11 49733774 49733844 -72110012 - B4A SINE B4 -14 278 188 4 964 630 0 0 0 chr11 49733844 49733914 -72109942 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 964 528 278 142 77 chr11 49733914 49734104 -72109752 - B4A SINE B4 -105 187 1 4 964 334 309 0 0 chr11 49734419 49734503 -72109353 + B4A SINE B4 1 84 -208 5 964 512 231 29 0 chr11 49734518 49734622 -72109234 - MER44D DNA MER2_type -598 107 1 5 964 236 298 12 0 chr11 49734624 49734708 -72109148 - L1MEc LINE L1 -328 6024 5940 5 964 608 290 7 20 chr11 49734749 49734897 -72108959 + B3A SINE B2 2 147 -51 5 964 368 40 20 0 chr11 49734899 49734949 -72108907 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 964 273 366 21 0 chr11 49734995 49735088 -72108768 + BC1_Mm scRNA scRNA 1 95 -57 5 964 464 316 14 14 chr11 49735303 49735441 -72108415 + MLT1E1A LTR MaLR 365 502 -151 5 964 230 281 122 76 chr11 49735455 49735586 -72108270 - MLT1A LTR MaLR -8 459 323 5 964 240 266 50 50 chr11 49735725 49735824 -72108032 - MLT1A LTR MaLR -260 114 16 5 964 653 274 26 31 chr11 49735785 49735977 -72107879 + MLT1E1A LTR MaLR 486 676 -4 5 964 246 273 30 10 chr11 49736023 49736123 -72107733 - L1MD LINE L1 -655 5704 5603 5 964 414 211 0 0 chr11 49736123 49736232 -72107624 + (TG)n Simple_repeat Simple_repeat 1 109 0 5 964 974 269 28 24 chr11 49736238 49736528 -72107328 - B4A SINE B4 -1 291 1 5 964 489 272 188 7 chr11 49736533 49736825 -72107031 - L1MEc LINE L1 -576 5776 5432 5 964 301 243 152 35 chr11 49736884 49737029 -72106827 - L1MC LINE L1 -976 5170 5009 5 964 34 42 0 0 chr11 49737059 49737107 -72106749 + AT_rich Low_complexity Low_complexity 1 48 0 5 964 872 221 29 0 chr11 49737145 49737317 -72106539 - B3A SINE B2 -17 181 5 5 964 492 332 65 33 chr11 49737329 49737703 -72106153 - L1MEc LINE L1 -3679 2640 2252 5 964 405 0 0 0 chr11 49737706 49737751 -72106105 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 964 324 291 191 7 chr11 49738199 49738351 -72105505 - MLT1E1 LTR MaLR -49 604 425 5 964 1274 170 48 82 chr11 49738397 49738691 -72105165 - MLT1E1 LTR MaLR -370 284 1 5 964 543 347 172 42 chr11 49738794 49738911 -72104945 - MLT1C LTR MaLR -1 466 350 5 964 628 274 39 82 chr11 49738911 49739118 -72104738 + B3A SINE B2 1 198 0 5 964 543 347 172 42 chr11 49739118 49739406 -72104450 - MLT1C LTR MaLR -118 349 8 5 964 443 186 10 0 chr11 49740977 49741074 -72102782 + CT-rich Low_complexity Low_complexity 1 98 0 5 964 261 244 174 0 chr11 49742341 49742427 -72101429 - MIR SINE MIR -89 173 73 5 964 443 256 17 4 chr11 49742510 49742609 -72101247 + B4A SINE B4 1 102 -63 5 964 729 235 7 13 chr11 49742624 49742763 -72101093 + RSINE1 SINE B4 7 143 -22 5 964 207 0 0 0 chr11 49742763 49742786 -72101070 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 964 4875 102 15 46 chr11 49742787 49743027 -72100829 - RLTR13D2 LTR ERVK 0 1023 799 5 964 1297 14 7 0 chr11 49743027 49743172 -72100684 + B1_Mus1 SINE Alu 2 147 -1 5 964 4875 135 33 59 chr11 49743172 49743802 -72100054 - RLTR13D2 LTR ERVK -225 798 33 5 964 351 0 0 0 chr11 49743802 49743841 -72100015 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 964 787 135 15 31 chr11 49743841 49743855 -72100001 - RLTR13D2 LTR ERVK -950 33 21 5 964 498 304 129 58 chr11 49743846 49744188 -72099668 + MLT1A1 LTR MaLR 43 408 0 5 964 309 256 94 79 chr11 49744257 49744384 -72099472 - MLT1K LTR MaLR -8 587 459 5 964 384 40 0 0 chr11 49745338 49745388 -72098468 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 964 286 243 178 0 chr11 49745929 49746036 -72097820 + MER113A DNA MER1_type 84 209 -105 5 964 209 260 0 39 chr11 49746386 49746438 -72097418 + MIRb SINE MIR 124 173 -95 5 964 285 250 188 0 chr11 49746450 49746578 -72097278 + L1MA6 LINE L1 6145 6296 -4 5 964 457 264 103 10 chr11 49746705 49746900 -72096956 + L1M4 LINE L1 4539 4751 -1395 5 964 996 118 21 0 chr11 49746985 49747129 -72096727 + B1_Mur4 SINE Alu 2 148 -2 5 964 644 250 120 60 chr11 49747138 49747338 -72096518 + B4 SINE B4 81 292 0 5 964 882 50 0 0 chr11 49747680 49747800 -72096056 + (CA)n Simple_repeat Simple_repeat 2 121 0 5 964 212 0 36 0 chr11 49748313 49748341 -72095515 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 964 222 341 94 8 chr11 49749088 49749215 -72094641 - L2c LINE L2 -232 3155 3018 5 964 2529 135 52 55 chr11 49750795 49751217 -72092639 + MTC LTR MaLR 1 421 0 5 964 964 231 142 8 chr11 49751412 49751652 -72092204 + B4A SINE B4 1 272 -20 5 964 297 109 0 0 chr11 49751656 49751702 -72092154 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 964 372 43 0 0 chr11 49751757 49751803 -72092053 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 5 964 261 57 0 0 chr11 49752477 49752512 -72091344 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 5 964 321 26 0 0 chr11 49753245 49753283 -72090573 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 964 225 211 52 17 chr11 49753308 49753366 -72090490 - MLT2B4 LTR ERVL 0 556 497 5 964 242 318 87 39 chr11 49753368 49753436 -72090420 + Lx8 LINE L1 6028 6095 -1378 5 964 1139 82 7 0 chr11 49753436 49753583 -72090273 + B1_Mus1 SINE Alu 1 148 0 5 964 242 318 87 39 chr11 49753583 49753743 -72090113 + Lx8 LINE L1 6096 6266 -1207 5 964 644 340 56 46 chr11 49753747 49754052 -72089804 - MTE2b LTR MaLR -71 308 1 5 964 342 0 0 0 chr11 49754132 49754170 -72089686 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 964 282 338 14 0 chr11 49754225 49754296 -72089560 - RSINE1 SINE B4 -92 73 2 5 964 838 248 6 6 chr11 49754325 49754487 -72089369 + RSINE1 SINE B4 4 165 0 5 964 387 256 63 5 chr11 49754499 49754682 -72089174 + L1MD LINE L1 4360 4555 -1591 5 964 222 164 16 47 chr11 49754695 49754759 -72089097 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 964 215 253 94 24 chr11 49755415 49755500 -72088356 - MIRm SINE MIR -112 164 74 5 964 235 318 171 0 chr11 49755541 49755717 -72088139 - L2a LINE L2 -5 3421 3216 5 964 264 335 55 6 chr11 49756089 49756272 -72087584 - L1MA9 LINE L1 -37 6275 6084 5 964 548 291 57 57 chr11 49756867 49756910 -72086946 - B3 SINE B2 -2 214 173 5 964 1388 76 33 0 chr11 49756910 49757094 -72086762 - B2_Mm2 SINE B2 -4 191 2 5 964 636 288 55 13 chr11 49757094 49757261 -72086595 - B3A SINE B2 -23 175 4 5 964 412 255 138 45 chr11 49757654 49757900 -72085956 - L1MC LINE L1 -931 5215 4947 5 964 721 262 7 0 chr11 49757950 49758091 -72085765 - RSINE1 SINE B4 -20 145 4 5 964 419 301 126 18 chr11 49758101 49758324 -72085532 - L1MC LINE L1 -1198 4948 4699 5 964 387 243 88 26 chr11 49758931 49759045 -72084811 - MTEa LTR MaLR -3 376 256 5 964 3124 278 90 52 chr11 49759075 49760231 -72083625 - ORR1E-int LTR MaLR -380 1200 1 5 964 627 291 115 59 chr11 49760233 49760572 -72083284 - ORR1E LTR MaLR 0 359 2 5 964 180 0 0 0 chr11 49760664 49760684 -72083172 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 964 325 200 0 0 chr11 49760711 49760766 -72083090 - B2_Mm2 SINE B2 -94 101 47 5 964 1297 92 0 0 chr11 49760817 49760990 -72082866 - B2_Mm2 SINE B2 -22 173 1 5 964 309 51 0 0 chr11 49760990 49761029 -72082827 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 964 1092 58 0 21 chr11 49761029 49761169 -72082687 - B1_Mus1 SINE Alu -10 138 2 5 964 1333 265 63 11 chr11 49761173 49761524 -72082332 - MTE2b LTR MaLR -9 370 2 5 964 180 0 0 0 chr11 49761669 49761689 -72082167 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 964 240 213 40 0 chr11 49761837 49761912 -72081944 + L1ME3B LINE L1 5954 6031 -209 5 964 579 237 108 49 chr11 49762318 49762522 -72081334 + B3 SINE B2 1 216 0 5 964 219 188 28 28 chr11 49762530 49762601 -72081255 + (TAA)n Simple_repeat Simple_repeat 1 71 0 5 964 764 203 7 14 chr11 49762617 49762757 -72081099 + B1_Mur2 SINE Alu 1 139 -10 5 964 2793 70 45 5 chr11 49762855 49763230 -72080626 - L1Md_F2 LINE L1 -12 6570 6181 5 964 4596 172 61 65 chr11 49764345 49765251 -72078605 - RMER19B LTR ERVK 0 902 1 5 964 475 293 104 11 chr11 49765627 49765896 -72077960 + L1M3 LINE L1 3352 3645 -2495 5 964 645 256 58 133 chr11 49765919 49766349 -72077507 + RMER2 LTR ERV1 2 540 -27 5 964 548 267 94 62 chr11 49766377 49766697 -72077159 + L1M3 LINE L1 3674 4003 -2137 5 964 392 235 122 0 chr11 49766792 49766890 -72076966 - RLTR20B1 LTR ERVK -4 559 450 5 964 939 267 168 24 chr11 49766919 49767250 -72076606 + MTE2b LTR MaLR 1 369 -1 5 964 390 42 0 0 chr11 49767456 49767504 -72076352 + (CTTTG)n Simple_repeat Simple_repeat 2 49 0 5 964 264 185 0 0 chr11 49767713 49767767 -72076089 + GA-rich Low_complexity Low_complexity 3 56 0 5 964 288 274 0 0 chr11 49767767 49767829 -72076027 - B3A SINE B2 -39 159 98 5 964 335 355 29 6 chr11 49767866 49768039 -72075817 - L1MB2 LINE L1 -262 5909 5733 5 964 373 315 0 18 chr11 49769733 49769846 -72074010 + B1F SINE Alu 36 146 -3 5 964 301 311 0 53 chr11 49770160 49770255 -72073601 + PB1D7 SINE Alu 10 99 -21 5 964 358 302 200 60 chr11 49771361 49771875 -72071981 - MLT1K LTR MaLR 0 595 10 5 964 367 227 219 7 chr11 49772880 49773031 -72070825 + B3A SINE B2 1 183 -15 5 964 489 74 65 8 chr11 49773689 49773812 -72070044 + (CA)n Simple_repeat Simple_repeat 2 131 0 5 964 387 0 0 0 chr11 49774375 49774418 -72069438 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 964 893 9 9 0 chr11 49775267 49775373 -72068483 + (GA)n Simple_repeat Simple_repeat 1 107 0 5 964 1331 266 210 12 chr11 49775595 49776113 -72067743 - Charlie1a DNA MER1_type -388 1067 447 5 964 234 23 45 23 chr11 49776138 49776182 -72067674 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 964 238 220 20 0 chr11 49776235 49776285 -72067571 - ID4 SINE ID -12 71 21 5 964 263 118 309 0 chr11 49776274 49776342 -72067514 - B2_Mm2 SINE B2 -106 89 1 5 964 2639 231 80 61 chr11 49776712 49777504 -72066352 - RLTR40 LTR ERVK -10 807 1 5 964 238 342 0 13 chr11 49777953 49778030 -72065826 - ID4_ SINE ID -7 76 1 5 964 341 226 24 12 chr11 49778039 49778124 -72065732 - PB1D10 SINE Alu 0 117 32 5 964 317 333 102 28 chr11 49778136 49778312 -72065544 - L1MEe LINE L1 -2694 3452 3264 5 964 589 188 9 0 chr11 49778395 49778726 -72065130 + (TG)n Simple_repeat Simple_repeat 1 334 0 5 964 407 216 0 0 chr11 49778745 49778819 -72065037 - B4 SINE B4 -217 75 2 6 964 281 233 43 22 chr11 49778857 49778949 -72064907 - L1MEe LINE L1 -3714 2452 2359 5 964 247 282 28 14 chr11 49778972 49779044 -72064812 - Tigger5 DNA MER2_type 0 2406 2334 6 964 258 116 0 0 chr11 49779422 49779465 -72064391 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 964 639 285 96 5 chr11 49779466 49779674 -72064182 + MER82 DNA MER2_type 2 228 -425 6 964 414 0 0 0 chr11 49779689 49779735 -72064121 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 964 269 214 186 0 chr11 49779905 49779975 -72063881 + ID4_ SINE ID 1 83 0 6 964 194 259 0 11 chr11 49779978 49780068 -72063788 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 6 964 3770 69 4 10 chr11 49781226 49781721 -72062135 + L1Md_F2 LINE L1 6091 6582 0 6 964 1058 125 161 5 chr11 49782226 49782419 -72061437 - URR1A DNA MER1_type -3 223 1 6 964 285 349 68 82 chr11 49783893 49784246 -72059610 - ORR1E LTR MaLR -11 348 1 6 964 246 231 73 44 chr11 49784402 49784470 -72059386 + MIRm SINE MIR 108 177 -99 6 964 687 275 49 15 chr11 49785041 49785244 -72058612 + B4 SINE B4 4 213 -79 6 964 213 39 0 0 chr11 49785245 49785271 -72058585 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 6 964 650 162 26 0 chr11 49785273 49785390 -72058466 - PB1D9 SINE Alu 0 120 1 6 964 315 0 0 0 chr11 49785423 49785458 -72058398 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 964 1195 48 0 20 chr11 49785458 49785596 -72058260 - B1_Mus2 SINE Alu -9 138 1 6 964 264 233 233 0 chr11 49785596 49785656 -72058200 + B4 SINE B4 200 273 -19 6 964 201 39 0 0 chr11 49785677 49785703 -72058153 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 964 1258 156 32 5 chr11 49786379 49786598 -72057258 + URR1B DNA MER1_type 1 225 0 6 964 1151 207 105 30 chr11 49787145 49787462 -72056394 - ORR1E LTR MaLR 0 370 8 6 964 654 269 142 39 chr11 49787532 49787842 -72056014 + MER2 DNA MER2_type 3 344 -1 6 964 946 142 43 0 chr11 49787845 49787986 -72055870 + B1_Mur4 SINE Alu 1 147 -3 6 964 752 221 6 25 chr11 49788038 49788196 -72055660 + RSINE1 SINE B4 3 157 -8 6 964 632 236 52 41 chr11 49788250 49788444 -72055412 + B3A SINE B2 2 197 -1 6 964 1159 76 0 0 chr11 49788464 49788608 -72055248 - B1_Mus2 SINE Alu -2 145 2 6 964 736 218 0 0 chr11 49788755 49788897 -72054959 + B1_Mur1 SINE Alu 1 142 -7 6 964 286 224 0 23 chr11 49789817 49789890 -72053966 - ID4 SINE ID -13 70 2 6 964 470 259 34 34 chr11 49789895 49790043 -72053813 - B1F SINE Alu -1 148 1 6 964 466 266 150 0 chr11 49790199 49790312 -72053544 - B1F SINE Alu 0 149 20 6 964 559 265 59 35 chr11 49790331 49790534 -72053322 + L1MD1 LINE L1 5585 5792 -450 6 964 444 37 0 0 chr11 49790566 49790620 -72053236 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 6 964 1116 80 0 0 chr11 49790662 49790800 -72053056 + B1_Mus1 SINE Alu 2 139 -9 6 964 221 0 35 0 chr11 49790800 49790829 -72053027 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 964 232 200 0 0 chr11 49790831 49790876 -72052980 + L1MD1 LINE L1 5952 5996 -246 6 964 255 210 290 0 chr11 49790882 49790944 -72052912 + ID4_ SINE ID 4 83 0 6 964 327 311 14 43 chr11 49790972 49791113 -72052743 + L1MD1 LINE L1 5982 6118 -124 6 964 662 291 35 11 chr11 49791118 49791292 -72052564 - Tigger5 DNA MER2_type -8 2398 2221 6 964 851 166 14 7 chr11 49791316 49791462 -72052394 - B1_Mur2 SINE Alu 0 149 3 6 964 385 309 184 6 chr11 49791467 49791710 -72052146 - Tigger5 DNA MER2_type -137 281 7 6 964 395 288 34 0 chr11 49791712 49791830 -72052026 + L1MD1 LINE L1 6121 6242 0 6 964 426 39 0 0 chr11 49792233 49792285 -72051571 + (ACTG)n Simple_repeat Simple_repeat 2 53 0 6 964 204 67 0 0 chr11 49792285 49792315 -72051541 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 964 776 182 65 7 chr11 49792315 49792453 -72051403 - B1_Mus1 SINE Alu -2 146 1 6 964 890 148 0 23 chr11 49792489 49792802 -72051054 + (CA)n Simple_repeat Simple_repeat 1 305 0 6 964 642 249 110 35 chr11 49793838 49794038 -72049818 + B4A SINE B4 1 215 -77 6 964 1015 117 0 14 chr11 49794617 49794764 -72049092 + B1_Mur3 SINE Alu 5 149 0 6 964 497 211 25 34 chr11 49795486 49795604 -72048252 + PB1D10 SINE Alu 1 117 0 6 964 351 247 0 12 chr11 49795635 49795717 -72048139 + ID4_ SINE ID 1 81 -2 6 964 240 287 148 0 chr11 49795827 49795928 -72047928 + L1M4b LINE L1 55 170 -7164 6 964 956 251 14 9 chr11 49795933 49796154 -72047702 + B4A SINE B4 9 230 -62 6 964 838 170 20 0 chr11 49796154 49796301 -72047555 + B1_Mur4 SINE Alu 1 150 0 6 964 208 135 54 0 chr11 49796339 49796376 -72047480 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 964 228 67 0 0 chr11 49796458 49796488 -72047368 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 964 230 206 78 16 chr11 49796503 49796567 -72047289 + L1M4b LINE L1 158 225 -7109 6 964 335 349 78 34 chr11 49796648 49796853 -72047003 + L1M4b LINE L1 346 559 -6775 6 964 450 79 0 0 chr11 49796854 49796917 -72046939 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 6 964 869 320 82 15 chr11 49797041 49797444 -72046412 + L1M4b LINE L1 776 1205 -6129 6 964 234 0 0 0 chr11 49797649 49797675 -72046181 + (T)n Simple_repeat Simple_repeat 1 26 0 6 964 1190 68 0 0 chr11 49797689 49797835 -72046021 - B1_Mus2 SINE Alu 0 147 2 6 964 743 192 150 27 chr11 49797868 49798055 -72045801 + B3 SINE B2 2 211 -5 6 964 332 289 97 62 chr11 49798099 49798387 -72045469 + L1M4b LINE L1 1734 2031 -4873 6 964 407 95 14 0 chr11 49798389 49798463 -72045393 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 964 337 273 113 21 chr11 49798556 49798698 -72045158 + L1M4b LINE L1 2047 2201 -5133 6 964 227 293 70 94 chr11 49798773 49798901 -72044955 - ORR1E LTR MaLR -13 346 222 6 964 881 222 168 16 chr11 49799018 49799332 -72044524 + ORR1E LTR MaLR 1 373 -6 6 964 562 256 19 1 chr11 49799378 49799504 -72044352 + ORR1E LTR MaLR 1 137 -233 6 964 568 217 56 66 chr11 49799815 49800012 -72043844 - B3A SINE B2 -1 197 3 6 964 207 162 0 0 chr11 49800129 49800166 -72043690 + T-rich Low_complexity Low_complexity 4 40 0 6 964 216 0 0 0 chr11 49800233 49800257 -72043599 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 6 964 552 241 55 28 chr11 49800825 49800970 -72042886 - B1F2 SINE Alu 0 149 1 6 964 385 311 9 54 chr11 49800978 49801090 -72042766 - PB1D10 SINE Alu -3 114 8 6 964 341 305 34 8 chr11 49801188 49801307 -72042549 - RSINE1 SINE B4 -41 124 3 6 964 352 219 51 20 chr11 49801379 49801477 -72042379 + L1MA5 LINE L1 6192 6292 -8 6 964 613 252 6 55 chr11 49801516 49801680 -72042176 - RSINE1 SINE B4 0 165 10 6 964 459 0 0 0 chr11 49801708 49801759 -72042097 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 964 459 259 26 18 chr11 49801766 49801880 -72041976 - B3 SINE B2 -55 161 47 6 964 398 262 0 16 chr11 49802057 49802181 -72041675 + L1M4 LINE L1 5606 5727 -457 6 964 510 132 0 0 chr11 49802197 49802273 -72041583 - ORR1B1 LTR MaLR -318 76 1 6 964 1054 118 6 6 chr11 49802628 49802790 -72041066 + URR1A DNA MER1_type 58 219 -7 6 964 311 255 0 97 chr11 49803550 49803715 -72040141 + C-rich Low_complexity Low_complexity 2 150 0 6 964 593 294 22 0 chr11 49803882 49804018 -72039838 + B1F SINE Alu 1 139 -10 6 964 280 252 44 125 chr11 49803918 49804054 -72039802 + MT2B2 LTR ERVL 194 318 -266 6 964 419 299 86 43 chr11 49804088 49804322 -72039534 - MER57D LTR ERV1 -5 406 163 6 964 524 291 63 81 chr11 49804918 49805139 -72038717 - MLT1A0 LTR MaLR -5 360 144 6 964 534 218 10 0 chr11 49805162 49805263 -72038593 - PB1D10 SINE Alu -1 116 15 6 964 251 283 29 12 chr11 49805277 49805379 -72038477 - MLT1A0 LTR MaLR -200 174 60 6 964 263 180 131 124 chr11 49805379 49805524 -72038332 + MLT1A1 LTR MaLR 3 145 -229 6 964 226 230 50 75 chr11 49805571 49805731 -72038125 + (AGGTG)n Simple_repeat Simple_repeat 2 157 0 6 964 538 313 80 53 chr11 49805745 49806045 -72037811 + MLT1A LTR MaLR 61 368 -6 6 964 241 370 12 0 chr11 49806081 49806162 -72037694 - Tigger5 DNA MER2_type -2324 82 1 6 964 198 0 0 0 chr11 49806912 49806934 -72036922 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 6 964 321 249 191 42 chr11 49806935 49807124 -72036732 + Tigger5 DNA MER2_type 64 280 -2126 6 964 485 214 116 3 chr11 49807156 49807313 -72036543 - MTD LTR MaLR 0 421 251 6 120 732 58 9 63 chr11 49807291 49807402 -72036454 + B1_Mm SINE Alu 43 147 0 6 965 987 226 133 29 chr11 49807393 49807672 -72036184 - MTD LTR MaLR -115 306 2 6 965 210 37 0 0 chr11 49807677 49807704 -72036152 + (CAA)n Simple_repeat Simple_repeat 2 28 0 6 965 555 220 234 11 chr11 49807721 49807896 -72035960 + B3 SINE B2 3 216 0 6 965 208 140 0 57 chr11 49808037 49808090 -72035766 + G-rich Low_complexity Low_complexity 1 50 0 6 965 281 291 40 57 chr11 49808194 49808318 -72035538 - MLT1A0 LTR MaLR -280 128 7 6 965 262 310 16 110 chr11 49808317 49808444 -72035412 + Tigger5 DNA MER2_type 2292 2406 0 6 965 600 14 0 0 chr11 49808449 49808518 -72035338 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 965 494 31 0 15 chr11 49808604 49808669 -72035187 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 965 314 98 0 19 chr11 49809152 49809204 -72034652 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 965 216 163 0 65 chr11 49809243 49809258 -72034598 - RSINE1 SINE B4 -120 45 3 6 965 220 65 0 0 chr11 49809258 49809289 -72034567 - B3A SINE B2 -166 32 2 6 965 180 0 0 0 chr11 49809305 49809325 -72034531 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 965 874 258 21 56 chr11 49809349 49809585 -72034271 + B4 SINE B4 1 227 -65 6 965 261 0 0 0 chr11 49809585 49809614 -72034242 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 965 874 258 21 56 chr11 49809614 49809661 -72034195 + B4 SINE B4 228 274 -18 6 965 500 198 9 28 chr11 49809743 49809852 -72034004 - PB1D7 SINE Alu 0 120 14 6 965 222 337 11 11 chr11 49809777 49809864 -72033992 - B4A SINE B4 -119 173 87 6 965 254 319 134 29 chr11 49810221 49810392 -72033464 - MLT1K LTR MaLR -3 592 404 6 965 222 62 0 0 chr11 49810475 49810507 -72033349 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 965 1271 131 51 14 chr11 49810546 49810762 -72033094 - URR1B DNA MER1_type -1 224 1 6 965 607 279 106 28 chr11 49810830 49811084 -72032772 - ORR1E LTR MaLR -85 274 1 7 965 336 270 0 22 chr11 49811141 49811232 -72032624 - ORSL DNA Tip100 0 275 187 7 965 1326 96 11 11 chr11 49811240 49811429 -72032427 - B2_Mm1t SINE B2 -4 189 1 7 965 1345 110 16 0 chr11 49811744 49811935 -72031921 + B2_Mm2 SINE B2 2 195 0 7 965 655 95 9 9 chr11 49811946 49812052 -72031804 + (GAAAA)n Simple_repeat Simple_repeat 3 108 0 7 965 454 206 10 20 chr11 49812059 49812158 -72031698 + B1_Mur4 SINE Alu 1 98 -52 7 965 339 130 0 0 chr11 49812158 49812212 -72031644 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 7 965 492 255 73 46 chr11 49812523 49812694 -72031162 + MLT1A0 LTR MaLR 205 365 0 7 965 1106 75 0 20 chr11 49812868 49813018 -72030838 + B1_Mm SINE Alu 1 147 0 7 965 197 22 87 22 chr11 49813021 49813067 -72030789 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 965 861 176 77 28 chr11 49813135 49813316 -72030540 + B2_Mm2 SINE B2 1 190 -5 7 965 453 36 0 0 chr11 49813404 49813459 -72030397 + (TGG)n Simple_repeat Simple_repeat 1 55 0 7 965 756 248 76 47 chr11 49813460 49813735 -72030121 - B4A SINE B4 -8 284 2 7 965 437 244 12 0 chr11 49814171 49814253 -72029603 + B4A SINE B4 2 84 -208 7 965 1074 79 7 0 chr11 49814268 49814408 -72029448 + B1_Mur4 SINE Alu 2 142 -8 7 965 369 0 0 0 chr11 49814423 49814464 -72029392 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 965 742 232 65 73 chr11 49814469 49814729 -72029127 + Lx7 LINE L1 7110 7367 -329 7 965 1003 131 0 14 chr11 49814750 49814897 -72028959 - B1_Mur4 SINE Alu -5 145 1 7 965 271 346 45 30 chr11 49815102 49815236 -72028620 + MLT1A0 LTR MaLR 230 365 0 7 965 182 295 82 0 chr11 49815698 49815759 -72028097 + L3 LINE CR1 4180 4245 -244 7 965 318 50 0 0 chr11 49816152 49816192 -72027664 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 965 478 331 91 85 chr11 49816331 49816694 -72027162 - MLT1A0 LTR MaLR 0 365 1 7 965 294 29 0 0 chr11 49816777 49816812 -72027044 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 965 1116 84 0 0 chr11 49816812 49816954 -72026902 - B1_Mus1 SINE Alu -2 146 5 7 965 1389 152 119 6 chr11 49817045 49817357 -72026499 - Lx9 LINE L1 0 7644 7298 7 965 695 333 74 21 chr11 49817368 49817653 -72026203 - MER21B LTR ERV1 -553 310 11 7 965 1159 69 7 0 chr11 49817807 49817951 -72025905 - B1_Mus2 SINE Alu -1 146 2 7 965 229 196 0 35 chr11 49817970 49817984 -72025872 + A-rich Low_complexity Low_complexity 1 13 0 7 965 1082 64 57 0 chr11 49817984 49818124 -72025732 + B1_Mus1 SINE Alu 1 148 0 7 965 229 196 0 35 chr11 49818124 49818167 -72025689 + A-rich Low_complexity Low_complexity 14 56 0 7 965 212 268 0 0 chr11 49818890 49818931 -72024925 - ID2 SINE ID -37 46 6 7 965 255 31 0 0 chr11 49818989 49819021 -72024835 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 965 1295 238 56 9 chr11 49819032 49819438 -72024418 - RMER19C LTR ERVK -2 609 223 7 965 2291 191 48 90 chr11 49819438 49819578 -72024278 - RLTR20A LTR ERVK 0 541 435 7 965 1140 83 0 7 chr11 49819578 49819724 -72024132 - B1_Mus2 SINE Alu -2 145 1 7 965 2291 191 48 90 chr11 49819724 49820148 -72023708 - RLTR20A LTR ERVK -107 434 1 7 965 640 161 23 76 chr11 49820148 49820316 -72023540 - RMER19C LTR ERVK -521 216 4 7 965 233 299 35 0 chr11 49820531 49820618 -72023238 + ORR1E LTR MaLR 1 90 -269 7 965 1270 27 0 0 chr11 49821163 49821310 -72022546 - B1_Mm SINE Alu 0 147 1 7 965 1933 147 59 82 chr11 49821932 49822370 -72021486 + RMER10A LTR ERVL 13 440 -2 7 965 261 0 0 0 chr11 49822374 49822403 -72021453 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 7 965 519 17 0 0 chr11 49822485 49822545 -72021311 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 965 658 174 210 11 chr11 49823241 49823427 -72020429 - ID_B1 SINE B4 0 224 2 7 965 1360 182 19 97 chr11 49824205 49824515 -72019341 - RLTR42-int LTR ERVK -4122 1400 1115 7 965 222 37 0 0 chr11 49826265 49826292 -72017564 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 965 23 0 0 0 chr11 49826858 49826881 -72016975 + GC_rich Low_complexity Low_complexity 1 23 0 7 965 563 314 71 57 chr11 49826950 49827322 -72016534 - MTEa LTR MaLR 0 394 23 7 965 400 343 14 20 chr11 49828101 49828247 -72015609 + MLT1B LTR MaLR 1 145 -229 7 965 616 255 6 78 chr11 49828281 49828447 -72015409 + RSINE1 SINE B4 11 164 -1 7 965 544 183 53 0 chr11 49828465 49828596 -72015260 - Lx5 LINE L1 0 7050 6913 7 965 501 254 32 21 chr11 49828612 49828771 -72015085 + MLT1B LTR MaLR 154 337 -53 7 965 546 302 85 40 chr11 49828771 49828993 -72014863 + B4 SINE B4 1 232 -60 7 965 2122 225 78 2 chr11 49828993 49829479 -72014377 + MT2A LTR ERVL 1 523 -10 7 965 1015 187 40 15 chr11 49829482 49829683 -72014173 + B3 SINE B2 1 206 -10 7 965 272 271 28 141 chr11 49830652 49830664 -72013192 + PB1 SINE Alu 1 73 -54 7 965 555 290 0 0 chr11 49830664 49830788 -72013068 + ID_B1 SINE B4 94 217 -7 7 965 360 175 32 0 chr11 49830797 49830860 -72012996 + B4 SINE B4 1 65 -227 7 965 198 274 65 57 chr11 49831997 49832121 -72011735 + MIRb SINE MIR 18 142 -134 7 965 190 194 91 61 chr11 49832087 49832153 -72011703 + MIRc SINE MIR 101 168 -100 7 965 652 223 76 29 chr11 49832174 49832345 -72011511 - ID_B1 SINE B4 -37 187 9 7 965 321 231 131 81 chr11 49832530 49832629 -72011227 + MamRep4096 DNA hAT? 6 109 -317 7 965 308 94 19 0 chr11 49832758 49832811 -72011045 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 965 1410 190 12 16 chr11 49833441 49833687 -72010169 + RLTR18B LTR ERVK 268 512 0 7 965 228 299 60 0 chr11 49833732 49833799 -72010057 - Lx8 LINE L1 -369 7104 7034 7 965 249 308 0 60 chr11 49834224 49834307 -72009549 - MER63B DNA AcHobo -48 388 311 7 965 239 206 30 45 chr11 49834308 49834374 -72009482 - MER63B DNA AcHobo -353 83 19 7 965 556 191 21 11 chr11 49834702 49834797 -72009059 + ID_B1 SINE B4 79 174 -50 7 965 290 98 0 0 chr11 49834797 49834838 -72009018 + ORR1D2 LTR MaLR 325 365 -5 7 965 412 266 0 27 chr11 49835308 49835420 -72008436 - MLT1A1 LTR MaLR -6 402 294 7 965 282 269 112 9 chr11 49835628 49835744 -72008112 - MLT1A1 LTR MaLR -237 128 1 7 965 472 293 193 9 chr11 49835917 49836248 -72007608 + L1ME3A LINE L1 5744 6135 -38 7 965 333 0 0 0 chr11 49836271 49836308 -72007548 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 965 295 329 13 0 chr11 49836317 49836396 -72007460 - RSINE1 SINE B4 -2 163 84 7 965 545 244 33 8 chr11 49836459 49836579 -72007277 - B4 SINE B4 -169 123 1 7 965 868 28 0 0 chr11 49836698 49836805 -72007051 - B1_Mus2 SINE Alu 0 147 41 7 965 226 148 18 18 chr11 49837047 49837102 -72006754 + GA-rich Low_complexity Low_complexity 1 55 0 7 965 664 75 11 11 chr11 49837587 49837682 -72006174 - URR1B DNA MER1_type 0 225 131 7 965 32 43 0 0 chr11 49838794 49838840 -72005016 + GC_rich Low_complexity Low_complexity 1 46 0 7 965 180 0 0 0 chr11 49838872 49838892 -72004964 + (CGG)n Simple_repeat Simple_repeat 3 22 0 7 965 25 51 0 0 chr11 49838906 49838945 -72004911 + GC_rich Low_complexity Low_complexity 1 39 0 7 965 22 56 0 0 chr11 49839173 49839209 -72004647 + GC_rich Low_complexity Low_complexity 1 36 0 7 965 219 146 0 0 chr11 49839554 49839595 -72004261 + (CCCCCT)n Simple_repeat Simple_repeat 2 42 0 7 965 201 220 186 0 chr11 49840294 49840353 -72003503 - MIRm SINE MIR -3 273 204 7 965 782 180 209 0 chr11 49840861 49841033 -72002823 - B3 SINE B2 -7 209 2 7 965 273 246 41 73 chr11 49841411 49841534 -72002322 + PB1D7 SINE Alu 1 119 -1 7 965 226 375 0 0 chr11 49843413 49843477 -72000379 - tRNA-Ala-GCG tRNA tRNA -9 66 3 7 965 407 250 144 0 chr11 49843719 49843823 -72000033 + B3A SINE B2 1 119 -79 7 965 260 271 43 0 chr11 49843903 49843973 -71999883 + PB1D10 SINE Alu 24 96 -21 7 965 21 36 0 0 chr11 49844003 49844031 -71999825 + AT_rich Low_complexity Low_complexity 1 28 0 7 965 2431 95 18 4 chr11 49844211 49844584 -71999272 + L1_Mus3 LINE L1 6231 6962 -38 7 965 866 60 8 0 chr11 49844607 49844724 -71999132 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 7 965 1069 53 68 0 chr11 49844726 49844858 -71998998 - B1_Mus2 SINE Alu -6 141 1 7 965 446 262 71 106 chr11 49844892 49845033 -71998823 + B1_Mur1 SINE Alu 1 136 -13 7 965 334 288 143 20 chr11 49845077 49845322 -71998534 + L1MEc LINE L1 37 311 -6089 7 965 272 306 87 34 chr11 49845537 49845743 -71998113 + L1MEc LINE L1 639 855 -5545 7 965 201 330 9 62 chr11 49846164 49846277 -71997579 + L2a LINE L2 3320 3426 0 7 965 233 241 0 0 chr11 49846387 49846441 -71997415 + L1M5 LINE L1 5769 5822 -302 7 965 408 286 65 36 chr11 49846697 49846835 -71997021 + RSINE1 SINE B4 5 146 -19 7 965 254 312 65 0 chr11 49846940 49847017 -71996839 - ID4 SINE ID 0 83 2 7 965 452 257 14 56 chr11 49847149 49847293 -71996563 + ID_B1 SINE B4 84 221 -3 7 965 814 205 20 15 chr11 49847293 49847316 -71996540 + B1_Mur4 SINE Alu 3 307 -4 7 965 1158 73 0 0 chr11 49848157 49848293 -71995563 + B1_Mus2 SINE Alu 3 138 -9 7 965 206 0 69 0 chr11 49848293 49848322 -71995534 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 965 343 271 68 21 chr11 49848829 49848929 -71994927 + PB1D10 SINE Alu 13 112 -37 7 965 288 293 39 26 chr11 49848929 49849006 -71994850 + ID4 SINE ID 2 79 -4 7 965 190 358 196 18 chr11 49849089 49849527 -71994329 + L2 LINE L2 2367 2882 -537 7 965 276 30 0 0 chr11 49850039 49850072 -71993784 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 8 965 660 216 0 81 chr11 49850156 49850317 -71993539 + MLT1A0 LTR MaLR 1 148 -217 8 965 350 301 91 39 chr11 49850326 49850674 -71993182 + MLT1C LTR MaLR 41 465 -2 8 965 520 207 72 0 chr11 49851166 49851277 -71992579 + PB1D7 SINE Alu 1 119 -1 8 965 504 302 72 55 chr11 49851304 49851667 -71992189 - MLT1D LTR MaLR -94 411 7 8 965 1268 34 0 20 chr11 49851815 49851965 -71991891 - B1_Mus2 SINE Alu 0 147 1 8 965 219 36 0 0 chr11 49852044 49852072 -71991784 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 8 965 1007 39 156 0 chr11 49852075 49852203 -71991653 - B1_Mus1 SINE Alu 0 148 1 8 965 279 0 0 0 chr11 49852510 49852541 -71991315 + (T)n Simple_repeat Simple_repeat 1 31 0 8 965 1459 65 11 37 chr11 49852937 49853128 -71990728 - B2_Mm1t SINE B2 -6 187 2 8 965 441 0 0 0 chr11 49853580 49853629 -71990227 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 965 423 0 0 0 chr11 49853629 49853675 -71990181 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 965 1173 61 0 13 chr11 49853770 49853905 -71989951 + B1_Mus2 SINE Alu 1 134 -13 8 965 252 0 0 0 chr11 49853905 49853933 -71989923 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8 965 1173 61 0 13 chr11 49853933 49853946 -71989910 + B1_Mus2 SINE Alu 135 147 0 8 965 886 153 34 34 chr11 49854583 49854732 -71989124 - B1_Mur4 SINE Alu 0 150 2 8 965 348 161 0 0 chr11 49854819 49854881 -71988975 + CT-rich Low_complexity Low_complexity 3 64 0 8 965 265 241 81 0 chr11 49854884 49854971 -71988885 + L1M4 LINE L1 4617 4710 -1436 8 965 1215 55 0 0 chr11 49855519 49855664 -71988192 + B1_Mus1 SINE Alu 2 146 -2 8 965 864 60 224 0 chr11 49855688 49855804 -71988052 + B1_Mm SINE Alu 1 142 -5 8 965 200 59 29 0 chr11 49855805 49855839 -71988017 + (TAA)n Simple_repeat Simple_repeat 2 36 0 8 965 470 283 9 0 chr11 49855920 49856033 -71987823 - PB1 SINE Alu -13 114 1 8 965 295 271 73 3 chr11 49856056 49856162 -71987694 - PB1D7 SINE Alu -6 114 1 8 965 198 268 53 18 chr11 49856405 49856462 -71987394 - L2 LINE L2 -1006 2413 2355 8 965 570 67 0 0 chr11 49857450 49857525 -71986331 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 8 965 3244 76 0 8 chr11 49857686 49858085 -71985771 + MTA_Mm LTR MaLR 1 396 0 8 965 230 318 16 0 chr11 49858345 49858408 -71985448 + ID4_ SINE ID 1 64 -19 8 965 1334 120 38 89 chr11 49859337 49859574 -71984282 - URR1A DNA MER1_type 0 226 2 8 965 298 298 79 37 chr11 49860653 49860817 -71983039 + B4A SINE B4 1 171 -121 8 965 288 325 66 73 chr11 49861129 49861452 -71982404 - L2c LINE L2 -91 3296 2977 8 965 336 315 22 58 chr11 49861715 49861853 -71982003 - RSINE1 SINE B4 0 165 33 8 965 259 193 138 17 chr11 49861918 49861976 -71981880 + ID4 SINE ID 18 82 -1 8 965 24 0 0 0 chr11 49862403 49862427 -71981429 + AT_rich Low_complexity Low_complexity 1 24 0 8 965 929 239 24 19 chr11 49862427 49862640 -71981216 - B3 SINE B2 0 216 3 8 965 1222 227 93 15 chr11 49862733 49863001 -71980855 + B4 SINE B4 1 289 -3 8 965 330 253 25 12 chr11 49863174 49863254 -71980602 - ID4_ SINE ID -1 82 2 8 965 314 175 48 0 chr11 49864259 49864322 -71979534 - B1_Mur4 SINE Alu -83 67 2 8 965 392 97 16 0 chr11 49864407 49864469 -71979387 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 965 234 294 162 0 chr11 49864701 49864769 -71979087 - ID4 SINE ID -1 82 4 8 965 192 234 0 0 chr11 49864968 49865015 -71978841 + CT-rich Low_complexity Low_complexity 2 48 0 8 965 312 91 0 0 chr11 49866955 49866999 -71976857 + (TATG)n Simple_repeat Simple_repeat 1 44 0 8 965 456 303 0 10 chr11 49867023 49867123 -71976733 + B3A SINE B2 25 123 -75 8 965 198 0 0 0 chr11 49867339 49867361 -71976495 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 8 965 411 277 56 35 chr11 49867445 49867587 -71976269 + B4A SINE B4 136 280 -12 8 965 189 107 0 0 chr11 49867593 49867621 -71976235 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 965 228 130 109 18 chr11 49867933 49867988 -71975868 + L1MB7 LINE L1 5401 5460 -718 8 965 299 259 95 124 chr11 49868002 49868275 -71975581 + L1MB7 LINE L1 5536 5800 -384 8 965 570 179 32 0 chr11 49868304 49868399 -71975457 + B1F SINE Alu 44 141 -8 8 965 481 232 247 41 chr11 49868401 49868644 -71975212 + L1MB7 LINE L1 5840 6132 -52 8 965 219 113 0 159 chr11 49868651 49868714 -71975142 + B3 SINE B2 2 54 -162 8 965 1316 97 51 0 chr11 49868731 49868906 -71974950 - B2_Mm2 SINE B2 -10 185 2 8 965 237 65 0 0 chr11 49868983 49869014 -71974842 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 8 965 393 220 37 83 chr11 49869021 49869130 -71974726 + MT2B LTR ERVL 154 257 -344 8 965 924 150 0 0 chr11 49869035 49869175 -71974681 + B1_Mus2 SINE Alu 8 147 0 8 965 70 71 0 0 chr11 49869183 49869323 -71974533 + AT_rich Low_complexity Low_complexity 1 140 0 8 965 404 218 23 11 chr11 49870258 49870346 -71973510 + B4 SINE B4 13 101 -191 8 965 288 0 0 0 chr11 49870480 49870512 -71973344 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 8 965 303 28 0 0 chr11 49870531 49870567 -71973289 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 965 806 11 0 0 chr11 49871397 49871490 -71972366 + MTA_Mm LTR MaLR 1 93 -303 8 965 461 0 18 0 chr11 49871483 49871538 -71972318 + MTB LTR MaLR 345 400 0 8 965 664 246 31 0 chr11 49873940 49874070 -71969786 + B1_Mus2 SINE Alu 2 135 -12 8 965 435 246 117 45 chr11 49874147 49874326 -71969530 - B3A SINE B2 0 198 7 8 965 746 272 68 36 chr11 49874637 49874858 -71968998 + B4A SINE B4 1 228 -64 8 965 612 325 131 6 chr11 49875639 49875998 -71967858 + L1MC4 LINE L1 7238 7641 -401 8 965 216 86 0 0 chr11 49876163 49876198 -71967658 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 8 965 573 55 0 0 chr11 49876221 49876294 -71967562 + (TATG)n Simple_repeat Simple_repeat 1 73 0 8 965 505 270 28 70 chr11 49876390 49876664 -71967192 + L1M2 LINE L1 5403 5672 -619 8 965 316 93 18 53 chr11 49876781 49876838 -71967018 - B1F1 SINE Alu 0 149 95 8 965 531 0 0 0 chr11 49877357 49877416 -71966440 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 8 965 2393 165 15 15 chr11 49877511 49877922 -71965934 - MTC LTR MaLR -9 412 2 8 965 242 338 0 75 chr11 49878640 49878720 -71965136 - ID2 SINE ID -9 74 1 8 965 586 237 0 8 chr11 49878739 49878858 -71964998 - PB1D7 SINE Alu -1 119 2 8 965 210 37 0 0 chr11 49878861 49878888 -71964968 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 965 1266 36 0 0 chr11 49878888 49879027 -71964829 - B1_Mm SINE Alu -8 139 1 8 965 1072 212 64 0 chr11 49879059 49879262 -71964594 - ID_B1 SINE B4 -7 217 2 8 965 348 289 26 17 chr11 49879272 49879388 -71964468 - PB1D10 SINE Alu 0 117 1 8 965 321 275 0 42 chr11 49879314 49879409 -71964447 - ID_B1 SINE B4 -70 154 64 8 965 426 281 126 19 chr11 49879458 49879719 -71964137 + L1MC4 LINE L1 7152 7440 -602 8 965 455 302 31 8 chr11 49879844 49879974 -71963882 + ID_B1 SINE B4 91 223 -1 8 965 720 265 18 24 chr11 49879975 49880141 -71963715 + RSINE1 SINE B4 1 165 0 8 965 252 269 25 100 chr11 49880179 49880244 -71963612 + L1MC4 LINE L1 7557 7620 -422 8 965 2038 175 121 0 chr11 49880244 49880673 -71963183 - RLTR28B LTR ERVL 0 481 1 8 965 252 269 25 100 chr11 49880673 49880727 -71963129 + L1MC4 LINE L1 7621 7667 -375 8 965 180 0 0 0 chr11 49880914 49880934 -71962922 + (A)n Simple_repeat Simple_repeat 1 20 0 8 965 968 152 208 0 chr11 49881040 49881218 -71962638 + B3 SINE B2 1 215 -1 8 965 533 286 68 9 chr11 49881352 49881500 -71962356 + B3A SINE B2 3 162 -31 8 965 872 90 0 16 chr11 49881529 49881653 -71962203 - B1_Mur3 SINE Alu -2 147 26 8 965 1119 291 52 63 chr11 49881709 49881910 -71961946 + ORR1D2 LTR MaLR 1 201 -169 8 965 686 239 21 62 chr11 49881910 49882102 -71961754 + B3A SINE B2 1 184 -14 8 965 1119 291 52 63 chr11 49882102 49882267 -71961589 + ORR1D2 LTR MaLR 202 363 -7 8 965 476 217 52 128 chr11 49882499 49882535 -71961321 - B2_Mm2 SINE B2 0 195 160 8 965 279 0 0 0 chr11 49882535 49882566 -71961290 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 965 843 192 81 7 chr11 49882566 49882740 -71961116 - B3 SINE B2 -30 186 1 8 965 244 143 0 0 chr11 49883214 49883256 -71960600 - MARNA DNA Mariner -346 240 199 8 965 226 262 11 106 chr11 49885021 49885115 -71958741 + ID_B1 SINE B4 78 162 -62 8 965 322 311 66 28 chr11 49885154 49885336 -71958520 - L1MC4 LINE L1 -232 7810 7622 8 965 1225 279 128 16 chr11 49885493 49885674 -71958182 - L1MD2 LINE L1 -96 6263 6066 8 965 180 0 0 0 chr11 49885674 49885694 -71958162 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 965 1225 277 137 16 chr11 49885694 49886190 -71957666 - L1MD2 LINE L1 -294 6065 5491 8 965 456 19 0 0 chr11 49886252 49886305 -71957551 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 965 265 352 77 0 chr11 49886312 49886403 -71957453 - B4A SINE B4 -192 100 3 8 965 819 249 37 0 chr11 49886465 49886654 -71957202 - B3 SINE B2 -1 215 20 8 965 406 212 162 60 chr11 49886656 49886922 -71956934 - L1MD2 LINE L1 -849 5297 5005 8 965 276 164 36 0 chr11 49886947 49887002 -71956854 - L1MD2 LINE L1 -3111 3035 2979 8 965 258 214 18 18 chr11 49887044 49887101 -71956755 - PB1D10 SINE Alu -58 59 3 8 965 230 256 164 21 chr11 49887216 49887356 -71956500 - L1MDa LINE L1 -3345 3192 3033 8 965 301 332 138 5 chr11 49887440 49887643 -71956213 - L1MDa LINE L1 -6220 413 184 8 965 32 57 0 0 chr11 49887734 49887787 -71956069 + AT_rich Low_complexity Low_complexity 1 53 0 8 965 217 303 106 0 chr11 49888525 49888591 -71955265 - RSINE1 SINE B4 0 165 93 8 965 426 276 0 0 chr11 49889057 49889155 -71954701 + ID_B1 SINE B4 127 224 0 8 965 23 0 0 0 chr11 49889538 49889561 -71954295 + AT_rich Low_complexity Low_complexity 1 23 0 8 965 797 226 7 0 chr11 49889709 49889855 -71954001 + B1_Mus2 SINE Alu 1 147 0 9 965 192 97 0 0 chr11 49889987 49890018 -71953838 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 965 396 241 108 27 chr11 49890778 49890889 -71952967 + B4A SINE B4 173 292 0 9 965 226 343 145 17 chr11 49891020 49891192 -71952664 + L1MC LINE L1 5424 5617 -2265 9 965 441 129 23 23 chr11 49891275 49891362 -71952494 + PB1D9 SINE Alu 34 120 0 9 965 346 265 122 0 chr11 49891451 49891549 -71952307 - B3A SINE B2 -80 118 9 9 965 1098 102 7 0 chr11 49891697 49891844 -71952012 + B1_Mus1 SINE Alu 1 148 0 9 965 219 36 0 0 chr11 49891847 49891875 -71951981 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 965 897 57 24 0 chr11 49891954 49892077 -71951779 + B1_Mus1 SINE Alu 1 126 -22 9 965 723 100 0 0 chr11 49892079 49892189 -71951667 + (TGG)n Simple_repeat Simple_repeat 1 110 0 9 965 764 220 163 4 chr11 49892209 49892460 -71951396 + B4A SINE B4 2 292 0 9 965 267 328 159 29 chr11 49892968 49893106 -71950750 + RSINE1 SINE B4 2 157 -8 9 965 258 192 0 0 chr11 49893125 49893177 -71950679 + (CATA)n Simple_repeat Simple_repeat 4 55 0 9 965 763 289 121 26 chr11 49893669 49894536 -71949320 + L1MB3 LINE L1 4518 5466 -717 9 965 195 100 0 0 chr11 49894540 49894570 -71949286 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 965 1200 48 0 7 chr11 49894740 49894888 -71948968 - B1_Mus2 SINE Alu 0 147 1 9 965 301 323 21 10 chr11 49895010 49895107 -71948749 + PB1D10 SINE Alu 15 112 -5 9 965 481 284 67 12 chr11 49895111 49895275 -71948581 + L1MB3 LINE L1 5782 5954 -229 9 965 302 168 140 50 chr11 49895293 49895393 -71948463 + L1MB3 LINE L1 6068 6176 -7 9 965 461 277 31 0 chr11 49895511 49895641 -71948215 + B1F SINE Alu 7 140 -9 9 965 232 294 0 14 chr11 49895763 49895832 -71948024 + RSINE1 SINE B4 2 69 -96 9 965 285 206 56 93 chr11 49895988 49896095 -71947761 + L1MEf LINE L1 2157 2259 -3983 9 965 1686 21 0 0 chr11 49896105 49896292 -71947564 + B2_Mm1a SINE B2 2 188 -5 9 965 1161 146 14 24 chr11 49896464 49896675 -71947181 + ORR1A1 LTR MaLR 1 209 -137 9 965 1856 144 25 13 chr11 49896612 49896928 -71946928 - MT2B LTR ERVL -281 320 1 9 965 241 178 0 0 chr11 49897144 49897189 -71946667 + L1MEf LINE L1 2645 2689 -3457 9 965 1409 94 5 0 chr11 49897396 49897587 -71946269 - B2_Mm1a SINE B2 0 193 2 9 965 21 0 0 0 chr11 49897932 49897953 -71945903 + AT_rich Low_complexity Low_complexity 1 21 0 9 965 218 29 0 56 chr11 49898351 49898387 -71945469 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 9 965 225 266 24 48 chr11 49901210 49901293 -71942563 + ID4_ SINE ID 3 83 0 9 965 216 267 0 0 chr11 49902007 49902052 -71941804 + polypyrimidine Low_complexity Low_complexity 3 47 0 9 965 273 280 58 39 chr11 49902082 49902186 -71941670 - PB1D10 SINE Alu -11 106 1 9 965 200 200 0 24 chr11 49903014 49903055 -71940801 + C-rich Low_complexity Low_complexity 1 40 0 9 965 443 239 25 107 chr11 49903571 49903693 -71940163 - MER20 DNA MER1_type -2 217 106 9 965 186 103 0 0 chr11 49905727 49905756 -71938100 + (TAA)n Simple_repeat Simple_repeat 3 31 0 9 965 291 155 298 0 chr11 49906925 49907009 -71936847 + PB1 SINE Alu 19 127 0 9 965 885 167 0 20 chr11 49907854 49908007 -71935849 + B1_Mur4 SINE Alu 1 150 0 9 965 201 74 0 0 chr11 49908009 49908036 -71935820 + (GGAAA)n Simple_repeat Simple_repeat 3 29 0 9 965 24 0 0 0 chr11 49908123 49908147 -71935709 + AT_rich Low_complexity Low_complexity 1 24 0 9 965 1175 141 11 5 chr11 49908262 49908447 -71935409 - B2_Mm2 SINE B2 -8 187 2 9 965 332 258 10 92 chr11 49911042 49911140 -71932716 + ID_B1 SINE B4 80 169 -55 9 965 650 221 36 75 chr11 49911576 49911775 -71932081 + B3A SINE B2 21 211 -5 9 965 309 277 232 32 chr11 49913989 49914179 -71929677 + MIR SINE MIR 27 254 -8 9 965 444 218 220 57 chr11 49914229 49914370 -71929486 + RSINE1 SINE B4 2 165 0 9 965 26 30 0 0 chr11 49914413 49914446 -71929410 + AT_rich Low_complexity Low_complexity 1 33 0 9 965 605 231 29 29 chr11 49914643 49914781 -71929075 + RSINE1 SINE B4 2 139 -26 9 965 468 0 0 0 chr11 49914782 49914834 -71929022 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 965 202 211 0 0 chr11 49915224 49915262 -71928594 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 965 1353 70 38 0 chr11 49915480 49915666 -71928190 + B2_Mm1t SINE B2 1 193 0 9 965 29 0 0 0 chr11 49918208 49918237 -71925619 + AT_rich Low_complexity Low_complexity 1 29 0 9 965 319 323 40 8 chr11 49918491 49918616 -71925240 + L2a LINE L2 3298 3426 0 9 965 373 259 103 8 chr11 49919000 49919117 -71924739 - L1MB8 LINE L1 -233 5945 5818 9 965 438 285 169 19 chr11 49919116 49919542 -71924314 - L1MB8 LINE L1 -1809 4337 3848 9 965 270 286 0 0 chr11 49919542 49919605 -71924251 - PB1D10 SINE Alu 0 117 55 9 965 230 139 0 0 chr11 49920105 49920141 -71923715 - L1MB8 LINE L1 -3073 3073 3038 9 965 215 202 106 12 chr11 49920174 49920259 -71923597 - PB1 SINE Alu 0 127 35 9 965 366 293 134 70 chr11 49920278 49920777 -71923079 - L1MB8 LINE L1 -3109 3037 2507 9 965 311 0 26 0 chr11 49921367 49921406 -71922450 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 965 216 0 0 0 chr11 49922361 49922385 -71921471 + (A)n Simple_repeat Simple_repeat 1 24 0 9 965 228 267 74 28 chr11 49922919 49923027 -71920829 - B1_Mur1 SINE Alu 0 149 37 9 965 226 227 30 15 chr11 49923029 49923096 -71920760 - ID SINE ID -154 70 3 9 965 632 251 56 51 chr11 49924055 49924252 -71919604 + B3A SINE B2 1 198 0 9 965 589 164 134 0 chr11 49924435 49924569 -71919287 - URR1B DNA MER1_type -1 224 73 9 965 366 80 0 0 chr11 49924741 49924791 -71919065 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 9 965 399 209 171 0 chr11 49924803 49924908 -71918948 - B3 SINE B2 -57 159 37 9 965 297 313 0 0 chr11 49924992 49925107 -71918749 + (TG)n Simple_repeat Simple_repeat 1 115 0 9 965 400 263 26 14 chr11 49925109 49925233 -71918623 - PB1D10 SINE Alu -27 121 1 9 965 357 269 109 55 chr11 49925853 49926018 -71917838 + L1M5 LINE L1 4115 4288 -1858 9 965 326 258 80 40 chr11 49926145 49926270 -71917586 + L1M5 LINE L1 4335 4464 -1682 9 965 805 131 131 0 chr11 49926762 49926907 -71916949 + B2_Mm2 SINE B2 2 165 -30 9 965 234 0 0 0 chr11 49926922 49926948 -71916908 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 965 580 259 14 7 chr11 49926950 49927098 -71916758 + B1_Mur2 SINE Alu 1 149 0 9 965 396 0 0 0 chr11 49927215 49927259 -71916597 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 965 303 179 18 0 chr11 49927316 49927372 -71916484 - ID4_ SINE ID -9 74 18 9 965 1270 98 40 0 chr11 49927471 49927645 -71916211 + B2_Mm2 SINE B2 2 182 -13 9 965 262 105 22 0 chr11 49927684 49927738 -71916118 + B2_Mm2 SINE B2 64 121 -95 9 965 22 35 0 0 chr11 49927744 49927773 -71916083 + AT_rich Low_complexity Low_complexity 1 29 0 9 965 195 100 0 0 chr11 49927937 49927967 -71915889 + (TA)n Simple_repeat Simple_repeat 2 31 0 9 965 356 264 55 0 chr11 49927967 49928077 -71915779 - B3 SINE B2 -22 194 79 9 965 362 277 48 36 chr11 49928172 49928337 -71915519 + L1M5 LINE L1 5035 5201 -945 9 965 393 22 0 0 chr11 49928378 49928424 -71915432 + (TA)n Simple_repeat Simple_repeat 2 47 0 9 965 405 223 128 0 chr11 49928449 49928550 -71915306 + B1_Mur1 SINE Alu 11 123 -26 9 965 933 236 19 14 chr11 49928706 49928921 -71914935 + B3 SINE B2 1 216 0 9 965 744 187 14 6 chr11 49928961 49929109 -71914747 + ID_B1 SINE B4 92 245 -47 9 965 312 239 22 11 chr11 49929275 49929364 -71914492 + L1M5 LINE L1 5622 5711 -468 9 965 385 266 48 67 chr11 49929583 49929748 -71914108 - B3A SINE B2 -22 176 15 9 965 498 268 56 44 chr11 49930061 49930221 -71913635 + RSINE1 SINE B4 4 165 0 9 965 369 0 0 0 chr11 49930233 49930274 -71913582 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 965 637 203 22 22 chr11 49930274 49930410 -71913446 - B1_Mur4 SINE Alu -9 141 6 9 965 246 254 0 0 chr11 49930620 49930673 -71913183 + ID_B1 SINE B4 99 151 -73 9 965 433 267 16 24 chr11 49930673 49930796 -71913060 + B3A SINE B2 1 122 -76 9 965 1042 58 0 0 chr11 49930843 49930982 -71912874 + B1_Mus1 SINE Alu 10 148 0 9 965 796 245 42 5 chr11 49931851 49932040 -71911816 - B3A SINE B2 -1 197 2 9 965 841 240 77 0 chr11 49932072 49932268 -71911588 + ID_B1 SINE B4 2 212 -12 9 965 808 172 7 7 chr11 49935677 49935823 -71908033 - B1_Mus2 SINE Alu 0 147 2 9 966 1141 223 14 0 chr11 49939439 49939650 -71904206 + B3 SINE B2 2 215 -1 9 966 734 201 30 0 chr11 49939691 49939825 -71904031 + B1_Mur2 SINE Alu 2 139 -10 9 966 223 68 43 43 chr11 49939833 49939879 -71903977 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 9 966 2347 107 10 26 chr11 49939900 49940283 -71903573 - RLTR19-int LTR ERVK -4119 2018 1642 9 966 793 38 0 28 chr11 49940283 49940392 -71903464 - B1_Mus1 SINE Alu -21 127 22 9 966 354 226 72 99 chr11 49940297 49940449 -71903407 - MT2B LTR ERVL -337 264 117 9 966 948 146 70 0 chr11 49940449 49940607 -71903249 - RLTR19-int LTR ERVK -4540 1597 1429 9 966 327 360 0 0 chr11 49940655 49940805 -71903051 + (CCA)n Simple_repeat Simple_repeat 1 150 0 9 966 230 140 0 39 chr11 49941650 49941702 -71902154 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 9 966 1105 74 0 75 chr11 49941721 49941881 -71901975 - B1_Mus1 SINE Alu 0 148 1 9 966 21 0 0 0 chr11 49941915 49941936 -71901920 + AT_rich Low_complexity Low_complexity 1 21 0 9 966 297 307 64 59 chr11 49942082 49942269 -71901587 + B4A SINE B4 93 280 -12 9 966 879 270 108 19 chr11 49942342 49942769 -71901087 + L1MB5 LINE L1 5680 6144 -30 9 966 25 51 0 0 chr11 49943164 49943203 -71900653 + AT_rich Low_complexity Low_complexity 1 39 0 9 966 283 209 90 0 chr11 49943205 49943272 -71900584 - RSINE1 SINE B4 -38 127 55 9 966 782 138 14 0 chr11 49943352 49943497 -71900359 + (TCTA)n Simple_repeat Simple_repeat 2 148 0 1 966 282 280 0 74 chr11 49943504 49943585 -71900271 - B3A SINE B2 -16 182 108 1 966 574 206 9 0 chr11 49943654 49943761 -71900095 - B1_Mur1 SINE Alu -41 108 1 1 966 358 356 44 0 chr11 49943761 49943789 -71900067 - B4 SINE B4 -95 197 57 1 966 22 0 0 0 chr11 49945062 49945084 -71898772 + GC_rich Low_complexity Low_complexity 1 22 0 1 966 661 239 9 3 chr11 49946318 49946466 -71897390 + B3 SINE B2 45 191 -7 1 966 1122 62 0 7 chr11 49946466 49946613 -71897243 + B1_Mus1 SINE Alu 3 148 0 1 966 721 88 17 34 chr11 49946637 49946755 -71897101 + B1_Mur4 SINE Alu 35 150 0 1 966 1238 20 0 0 chr11 49946757 49946903 -71896953 + B1_Mm SINE Alu 2 147 0 1 966 203 0 0 36 chr11 49946911 49946939 -71896917 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 966 302 352 55 35 chr11 49946942 49947142 -71896714 + Arthur1 DNA Tip100 2682 2885 -1062 1 966 417 216 40 30 chr11 49947143 49947243 -71896613 - B1_Mur1 SINE Alu 0 149 49 1 966 490 285 206 9 chr11 49947263 49947497 -71896359 - B4A SINE B4 -8 284 5 1 966 615 319 111 35 chr11 49947500 49947896 -71895960 + Arthur1 DNA Tip100 2883 3308 -639 1 966 516 252 16 8 chr11 49948237 49948361 -71895495 + RSINE1 SINE B4 2 126 -39 1 966 335 250 57 0 chr11 49948437 49948525 -71895331 + PB1D10 SINE Alu 25 117 0 1 966 21 0 0 0 chr11 49948559 49948580 -71895276 + AT_rich Low_complexity Low_complexity 1 21 0 1 966 605 246 59 18 chr11 49948715 49948885 -71894971 + ID_B1 SINE B4 38 214 -10 1 966 597 202 93 0 chr11 49948972 49949101 -71894755 + B1_Mur1 SINE Alu 1 141 -8 1 966 481 360 78 7 chr11 49949684 49949978 -71893878 - MER82 DNA MER2_type -121 532 218 1 966 399 245 93 19 chr11 49950454 49950562 -71893294 + PB1D10 SINE Alu 1 116 -1 1 966 875 284 27 5 chr11 49950564 49950783 -71893073 + ID_B1 SINE B4 1 224 0 1 966 698 108 115 0 chr11 49950791 49950921 -71892935 + B1_Mus1 SINE Alu 1 145 -3 1 966 459 0 0 0 chr11 49950921 49950972 -71892884 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 966 256 260 14 0 chr11 49950985 49951061 -71892795 + ID4 SINE ID 3 82 -1 1 966 323 308 75 86 chr11 49951489 49951663 -71892193 - B4A SINE B4 -118 174 3 1 966 284 292 46 13 chr11 49952183 49952330 -71891526 + MIRb SINE MIR 21 162 -46 1 966 562 231 185 0 chr11 49952586 49952759 -71891097 + B3 SINE B2 1 205 -11 1 966 389 233 181 30 chr11 49954066 49954199 -71889657 + MER2 DNA MER2_type 1 153 -192 1 966 250 343 0 0 chr11 49954269 49954339 -71889517 + MER2 DNA MER2_type 276 345 0 1 966 247 318 122 0 chr11 49954462 49954569 -71889287 + ORR1E LTR MaLR 1 120 -239 1 966 741 196 0 69 chr11 49954991 49955150 -71888706 - B1_Mur1 SINE Alu -1 148 1 1 966 337 322 174 0 chr11 49955156 49955271 -71888585 - ID_B1 SINE B4 -6 218 84 1 966 1151 41 0 20 chr11 49955315 49955464 -71888392 + B1_Mm SINE Alu 1 146 -1 1 966 263 300 70 62 chr11 49955758 49955791 -71888065 + MT2B LTR ERVL 127 160 -441 1 966 385 269 56 0 chr11 49955791 49955910 -71887946 + B1F2 SINE Alu 1 123 -24 1 966 376 322 16 8 chr11 49956544 49956666 -71887190 + B4A SINE B4 162 284 -8 1 966 354 303 47 55 chr11 49957340 49957523 -71886333 + B3A SINE B2 17 216 0 1 966 832 103 81 0 chr11 49957558 49957694 -71886162 - B1_Mus1 SINE Alu 0 148 2 1 966 2977 53 63 24 chr11 49957736 49958209 -71885647 + L1_Mus2 LINE L1 6120 6566 0 1 966 317 257 157 10 chr11 49958286 49958388 -71885468 + ID_B1 SINE B4 96 212 -12 1 966 213 39 0 0 chr11 49958410 49958436 -71885420 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 966 1051 59 0 0 chr11 49960118 49960254 -71883602 + B2_Mm1t SINE B2 1 136 -57 1 966 238 246 0 17 chr11 49960262 49960309 -71883547 + polypurine Low_complexity Low_complexity 3 48 0 1 966 1629 26 0 0 chr11 49960309 49960501 -71883355 + B2_Mm1a SINE B2 2 193 0 1 966 365 268 18 37 chr11 49962269 49962482 -71881374 + (CATA)n Simple_repeat Simple_repeat 1 209 0 1 966 255 276 40 0 chr11 49963539 49963608 -71880248 + MER20 DNA MER1_type 110 181 -38 1 966 370 300 126 9 chr11 49963608 49963719 -71880137 + PB1D10 SINE Alu 1 124 -3 1 966 578 219 8 0 chr11 49964004 49964127 -71879729 + B1_Mur2 SINE Alu 26 149 0 1 966 498 133 114 0 chr11 49964133 49964238 -71879618 + B3A SINE B2 1 117 -81 1 966 774 202 44 0 chr11 49964439 49964597 -71879259 + RSINE1 SINE B4 1 165 0 1 966 353 179 57 0 chr11 49966479 49966558 -71877298 + B1F SINE Alu 20 113 -7 1 966 327 268 150 9 chr11 49966553 49966666 -71877190 + ID_B1 SINE B4 80 208 -16 1 966 566 187 115 46 chr11 49966705 49966879 -71876977 + B3A SINE B2 1 186 -12 1 966 468 228 0 0 chr11 49966994 49967095 -71876761 - L1MB3 LINE L1 -10 6173 6073 1 966 315 260 79 86 chr11 49967228 49967531 -71876325 - RMER10A LTR ERVL -19 423 123 1 966 316 304 128 54 chr11 49967596 49968036 -71875820 - L1MB3 LINE L1 -266 5905 5415 1 966 649 286 80 28 chr11 49969327 49969539 -71874317 + MER2 DNA MER2_type 2 224 -121 1 966 1250 80 23 0 chr11 49969542 49969717 -71874139 + B2_Mm1a SINE B2 1 179 -14 1 966 1181 87 0 17 chr11 49969717 49969877 -71873979 + B2_Mm1t SINE B2 1 159 -34 1 966 219 36 0 0 chr11 49969877 49969905 -71873951 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 1 966 1181 87 0 17 chr11 49969905 49969919 -71873937 + B2_Mm1t SINE B2 160 172 -21 1 966 557 216 101 0 chr11 49973384 49973532 -71870324 - B4 SINE B4 -36 256 94 1 966 792 116 0 175 chr11 49973546 49973723 -71870133 - B1_Mur4 SINE Alu -2 148 3 1 966 216 0 0 0 chr11 49973729 49973753 -71870103 + (T)n Simple_repeat Simple_repeat 1 24 0 1 966 545 291 15 0 chr11 49973781 49973915 -71869941 - RSINE1 SINE B4 -28 137 2 1 966 472 167 0 0 chr11 49973916 49973994 -71869862 - B4 SINE B4 -196 96 19 1 966 313 300 277 12 chr11 49974050 49974291 -71869565 - MLT1K LTR MaLR -32 563 259 1 966 194 0 0 37 chr11 49974491 49974518 -71869338 + (GTTTG)n Simple_repeat Simple_repeat 5 30 0 1 966 347 256 10 50 chr11 49974589 49974708 -71869148 - PB1 SINE Alu -96 215 22 1 966 303 28 0 0 chr11 49976806 49976842 -71867014 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 966 292 242 0 15 chr11 49976994 49977061 -71866795 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 1 966 242 295 95 77 chr11 49977061 49977163 -71866693 + ID_B1 SINE B4 8 179 -45 1 966 294 183 56 0 chr11 49977100 49977171 -71866685 + PB1D7 SINE Alu 35 109 -11 1 966 428 292 22 66 chr11 49978253 49978436 -71865420 + ID_B1 SINE B4 4 178 -46 1 966 280 330 18 62 chr11 49978337 49978450 -71865406 + PB1D10 SINE Alu 5 112 -5 1 966 463 242 0 0 chr11 49978451 49978546 -71865310 + RSINE1 SINE B4 3 97 -68 1 966 698 186 27 7 chr11 49978613 49978759 -71865097 + B1_Mur1 SINE Alu 1 149 0 1 966 740 196 122 11 chr11 49979052 49979233 -71864623 + B3 SINE B2 9 209 -7 1 966 183 94 0 0 chr11 49979249 49979262 -71864594 + (A)n Simple_repeat Simple_repeat 1 13 0 1 966 1174 48 0 7 chr11 49979262 49979410 -71864446 + B1_Mus2 SINE Alu 1 147 0 1 966 183 94 0 0 chr11 49979410 49979428 -71864428 + (A)n Simple_repeat Simple_repeat 1 18 0 1 966 1136 68 7 0 chr11 49979433 49979579 -71864277 + B1_Mus1 SINE Alu 2 148 0 1 966 335 337 20 0 chr11 49979600 49979698 -71864158 + B1_Mur2 SINE Alu 2 101 -48 1 966 699 86 256 0 chr11 49979731 49979848 -71864008 + B1_Mus1 SINE Alu 1 147 -1 1 966 320 305 47 8 chr11 49979853 49979982 -71863874 + L1M5 LINE L1 3073 3206 -2940 1 966 302 273 67 11 chr11 49980298 49980387 -71863469 + RSINE1 SINE B4 62 155 -10 1 966 330 139 3 41 chr11 49980525 49980602 -71863254 - B2_Mm2 SINE B2 -75 123 43 1 966 1128 109 17 6 chr11 49980630 49980806 -71863050 - B2_Mm1t SINE B2 -14 179 2 1 966 1503 36 0 10 chr11 49980889 49981084 -71862772 - B2_Mm1a SINE B2 0 193 1 1 966 1140 82 0 0 chr11 49981087 49981234 -71862622 - B1_Mus1 SINE Alu 0 148 2 1 966 1199 48 0 0 chr11 49981262 49981408 -71862448 - B1_Mm SINE Alu 0 147 2 1 966 313 240 0 0 chr11 49981448 49981523 -71862333 - ID4_ SINE ID -6 77 3 1 966 468 0 0 0 chr11 49982136 49982188 -71861668 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 966 297 244 25 13 chr11 49982892 49982969 -71860887 + RSINE1 SINE B4 3 80 -85 1 966 1906 121 102 9 chr11 49982969 49983302 -71860554 - ORR1B1 LTR MaLR 0 394 31 1 966 704 168 16 0 chr11 49983302 49983427 -71860429 + B1_Mur4 SINE Alu 16 142 -8 1 966 216 0 0 0 chr11 49983600 49983624 -71860232 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 966 266 312 0 88 chr11 49983700 49983722 -71860134 + B4A SINE B4 75 87 -205 1 966 458 250 0 10 chr11 49983722 49983819 -71860037 + B1_Mur2 SINE Alu 4 99 -50 1 966 201 147 0 0 chr11 49983825 49983859 -71859997 + (TGGG)n Simple_repeat Simple_repeat 4 37 0 1 966 423 151 21 11 chr11 49983860 49983954 -71859902 + GA-rich Low_complexity Low_complexity 3 97 0 1 966 331 281 25 34 chr11 49985907 49986025 -71857831 + PB1D10 SINE Alu 1 117 0 1 966 326 241 115 9 chr11 49986149 49986262 -71857594 + B4A SINE B4 167 291 -1 1 966 25 0 0 0 chr11 49986262 49986287 -71857569 + AT_rich Low_complexity Low_complexity 1 25 0 1 966 2415 127 59 23 chr11 49986499 49986942 -71856914 - RMER6B LTR ERVK 0 461 3 1 966 588 106 52 21 chr11 49986942 49987038 -71856818 - RMER6B LTR ERVK -347 114 16 1 966 712 165 0 38 chr11 49987084 49987216 -71856640 + B1_Mur4 SINE Alu 1 127 -23 1 966 379 260 10 17 chr11 49987333 49987500 -71856356 - B3 SINE B2 -2 214 31 1 966 39 22 0 0 chr11 49987535 49987581 -71856275 + AT_rich Low_complexity Low_complexity 1 46 0 1 966 329 0 52 35 chr11 49987656 49987714 -71856142 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 966 1138 48 7 0 chr11 49987720 49987865 -71855991 - B1_Mus1 SINE Alu -1 147 2 1 966 417 81 0 0 chr11 49988079 49988141 -71855715 + (ATTTG)n Simple_repeat Simple_repeat 2 63 0 1 966 281 206 58 14 chr11 49988946 49988959 -71854897 + PB1D9 SINE Alu 49 119 0 1 966 299 200 0 0 chr11 49988959 49989014 -71854842 + ID_B1 SINE B4 170 224 0 1 966 224 304 43 0 chr11 49989179 49989248 -71854608 - PB1D10 SINE Alu -3 114 43 1 966 885 251 31 0 chr11 49989556 49989751 -71854105 - B3 SINE B2 -10 206 6 1 966 252 77 0 0 chr11 49989828 49989867 -71853989 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 966 574 261 204 22 chr11 49989879 49990110 -71853746 - B4A SINE B4 -2 290 18 1 966 400 263 0 39 chr11 49990758 49990861 -71852995 + B3A SINE B2 5 103 -95 1 966 411 200 0 36 chr11 49991317 49991400 -71852456 + ID_B1 SINE B4 145 224 0 1 966 378 115 174 9 chr11 49991434 49991530 -71852326 + B1_Mur4 SINE Alu 45 150 0 1 966 397 299 77 19 chr11 49992365 49992573 -71851283 + L2 LINE L2 1894 2113 -1306 1 966 616 46 0 33 chr11 49992573 49992663 -71851193 + B1_Mus2 SINE Alu 61 147 0 1 966 212 313 108 0 chr11 49993209 49993292 -71850564 + L2 LINE L2 2721 2812 -607 1 966 436 328 53 109 chr11 49993482 49993695 -71850161 - MER45B DNA Tip100 -17 1023 839 1 966 3964 136 50 36 chr11 49993695 49994441 -71849415 + RMER6A LTR ERVK 1 756 0 1 966 436 328 53 109 chr11 49994441 49994566 -71849290 - MER45B DNA Tip100 -202 838 705 1 966 235 316 17 34 chr11 49994628 49994746 -71849110 - PB1D9 SINE Alu 0 120 5 1 966 474 320 66 22 chr11 49994862 49995044 -71848812 - MER45B DNA Tip100 -741 299 110 1 966 249 220 51 0 chr11 49995124 49995183 -71848673 - AluF_3 SINE Alu -106 205 144 1 966 1160 62 0 0 chr11 49995227 49995373 -71848483 - B1_Mus2 SINE Alu 0 147 2 1 966 490 224 0 0 chr11 49995397 49995513 -71848343 - PB1D9 SINE Alu -2 118 3 1 966 531 289 117 0 chr11 49995513 49995693 -71848163 - MER2 DNA MER2_type -118 227 27 1 966 517 178 23 1 chr11 49995788 49995893 -71847963 - B1_Mur4 SINE Alu -12 108 1 1 966 276 263 20 40 chr11 49995805 49995904 -71847952 - B4A SINE B4 -119 173 77 1 966 214 209 0 23 chr11 49996351 49996395 -71847461 - RSINE1 SINE B4 -117 48 6 1 966 556 160 166 0 chr11 49997208 49997328 -71846528 + B1_Mus1 SINE Alu 1 143 -6 1 966 687 245 7 0 chr11 49997355 49997494 -71846362 + ID_B1 SINE B4 81 220 -4 1 966 790 175 14 0 chr11 49998027 49998170 -71845686 - B1_Mur2 SINE Alu 0 149 5 1 966 239 278 37 102 chr11 49998259 49998367 -71845489 + MT2B LTR ERVL 157 257 -344 1 966 609 167 10 0 chr11 49998272 49998374 -71845482 + B1_Mur2 SINE Alu 9 111 -38 1 966 235 140 175 0 chr11 49998465 49998522 -71845334 - PB1D9 SINE Alu -1 119 53 1 966 1350 79 21 0 chr11 49998701 49998891 -71844965 + B2_Mm2 SINE B2 1 194 -1 1 966 220 143 47 16 chr11 49998905 49998969 -71844887 + T-rich Low_complexity Low_complexity 4 69 0 1 966 483 269 104 30 chr11 49998969 49999103 -71844753 - B1_Mur1 SINE Alu 0 149 6 1 966 643 129 25 25 chr11 50000010 50000129 -71843727 + PB1D9 SINE Alu 1 119 -1 1 966 238 336 61 48 chr11 50000302 50000449 -71843407 + RSINE1 SINE B4 3 151 -14 2 966 263 238 16 8 chr11 50000475 50000602 -71843254 + ORR1B1-int LTR MaLR 632 759 -750 3 966 1021 51 0 14 chr11 50000494 50000633 -71843223 + B1_Mus1 SINE Alu 7 143 -5 4 966 350 243 91 65 chr11 50000504 50000658 -71843198 + MT2B2 LTR ERVL 179 336 -248 5 966 643 212 103 32 chr11 50001196 50001381 -71842475 + B3A SINE B2 1 198 0 6 966 25 65 0 0 chr11 50001662 50001708 -71842148 + AT_rich Low_complexity Low_complexity 1 46 0 7 966 1095 144 192 6 chr11 50001708 50001890 -71841966 + B3 SINE B2 1 216 0 8 966 548 198 321 36 chr11 50001922 50002090 -71841766 - B3 SINE B2 0 216 1 9 966 421 191 29 20 chr11 50002100 50002219 -71841637 - PB1D9 SINE Alu -1 119 1 1 966 431 252 20 0 chr11 50002788 50002887 -71840969 + RSINE1 SINE B4 37 137 -28 1 966 1512 65 5 0 chr11 50002970 50003155 -71840701 - B2_Mm1a SINE B2 -7 186 1 1 966 827 177 21 21 chr11 50003216 50003408 -71840448 - B3 SINE B2 -3 192 1 1 966 1683 36 0 0 chr11 50003731 50003923 -71839933 - B2_Mm1a SINE B2 -1 192 1 1 966 584 261 0 21 chr11 50004544 50004689 -71839167 - RSINE1 SINE B4 -23 142 1 1 966 1362 89 11 5 chr11 50005704 50005895 -71837961 + B2_Mm1t SINE B2 2 193 0 1 966 261 0 0 0 chr11 50006026 50006055 -71837801 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 966 428 262 100 69 chr11 50006268 50006428 -71837428 + RSINE1 SINE B4 1 165 0 1 966 316 295 44 78 chr11 50006445 50006473 -71837383 + B4A SINE B4 75 168 -124 1 966 986 53 0 0 chr11 50006473 50006604 -71837252 + B1_Mus2 SINE Alu 17 147 0 2 966 316 295 44 78 chr11 50006604 50006625 -71837231 + B4A SINE B4 169 248 -44 1 966 244 27 0 0 chr11 50006666 50006703 -71837153 + B1_Mur4 SINE Alu 114 150 0 2 966 237 146 0 0 chr11 50006703 50006751 -71837105 + (A)n Simple_repeat Simple_repeat 1 48 0 2 966 305 259 84 78 chr11 50006869 50007011 -71836845 + B4A SINE B4 78 220 -72 2 966 692 143 45 8 chr11 50006884 50007018 -71836838 + B1_Mur2 SINE Alu 10 148 -1 2 966 21 0 0 0 chr11 50007086 50007107 -71836749 + AT_rich Low_complexity Low_complexity 1 21 0 2 966 841 197 96 20 chr11 50007118 50007315 -71836541 - B3 SINE B2 0 216 5 2 966 353 229 4 23 chr11 50007378 50007472 -71836384 + B1_Mur4 SINE Alu 1 95 -52 2 966 210 224 132 66 chr11 50008350 50008441 -71835415 - L2b LINE L2 -2 3373 3277 2 966 920 137 7 33 chr11 50008683 50008834 -71835022 - B1_Mm SINE Alu 0 147 1 2 966 297 0 0 0 chr11 50009040 50009073 -71834783 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 966 737 121 22 44 chr11 50009097 50009278 -71834578 + C-rich Low_complexity Low_complexity 4 180 0 3 966 226 276 0 33 chr11 50009300 50009360 -71834496 - B1_Mus2 SINE Alu -88 59 2 3 966 211 284 26 51 chr11 50009422 50009500 -71834356 + ID SINE ID 1 76 -148 3 966 909 147 14 7 chr11 50009562 50009706 -71834150 + B1_Mus1 SINE Alu 4 148 0 3 966 1279 146 8 80 chr11 50009868 50009986 -71833870 + URR1A DNA MER1_type 5 123 -103 3 966 1170 69 0 7 chr11 50009986 50010132 -71833724 + B1_Mus1 SINE Alu 2 146 -2 3 966 207 0 0 0 chr11 50010132 50010155 -71833701 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 966 1279 146 8 80 chr11 50010155 50010274 -71833582 + URR1A DNA MER1_type 124 225 -1 3 966 226 262 47 47 chr11 50010755 50010819 -71833037 + B1F SINE Alu 19 82 -67 3 966 341 299 0 0 chr11 50011267 50011344 -71832512 - ID4_ SINE ID -6 77 1 3 966 357 290 9 36 chr11 50011364 50011475 -71832381 - PB1 SINE Alu -2 125 18 4 966 481 256 123 8 chr11 50011584 50011706 -71832150 + B1_Mur3 SINE Alu 2 137 -12 4 966 243 300 19 74 chr11 50011714 50011822 -71832034 + MT2B2 LTR ERVL 150 251 -333 4 966 335 238 36 0 chr11 50011740 50011824 -71832032 + PB1D10 SINE Alu 11 97 -20 4 966 225 0 0 0 chr11 50012217 50012242 -71831614 + (T)n Simple_repeat Simple_repeat 1 25 0 4 966 1290 34 0 0 chr11 50012242 50012389 -71831467 - B1_Mus2 SINE Alu 0 147 1 4 966 288 241 0 0 chr11 50014696 50014754 -71829102 + ID_B1 SINE B4 85 142 -82 4 966 230 316 0 95 chr11 50014754 50014822 -71829034 + PB1D10 SINE Alu 4 117 0 4 966 483 297 122 27 chr11 50014865 50015128 -71828728 - B4A SINE B4 -4 288 1 4 966 1447 70 27 0 chr11 50016650 50016835 -71827021 + B2_Mm1a SINE B2 1 190 -3 4 966 189 0 0 0 chr11 50017427 50017448 -71826408 + (T)n Simple_repeat Simple_repeat 1 21 0 5 966 1291 34 0 0 chr11 50017448 50017595 -71826261 - B1_Mus2 SINE Alu 0 147 1 5 966 359 239 68 0 chr11 50018770 50018858 -71824998 + PB1D7 SINE Alu 27 120 0 5 966 1729 126 213 10 chr11 50019169 50019474 -71824382 + ORR1B2 LTR MaLR 1 367 0 5 966 584 192 83 0 chr11 50019874 50019994 -71823862 + B1F1 SINE Alu 2 131 -18 5 966 342 281 58 10 chr11 50020077 50020181 -71823675 - PB1D10 SINE Alu -8 109 1 5 966 1236 28 7 7 chr11 50021961 50022107 -71821749 - B1_Mm SINE Alu 0 147 2 5 966 334 258 151 16 chr11 50022157 50022283 -71821573 - B1F2 SINE Alu 0 149 7 5 966 493 260 130 60 chr11 50022296 50022480 -71821376 - B3A SINE B2 0 198 2 5 966 327 276 23 0 chr11 50022686 50022773 -71821083 + L1M4 LINE L1 5744 5832 -346 5 966 302 226 48 0 chr11 50022776 50022838 -71821018 + ID4 SINE ID 11 75 -8 6 966 331 359 67 52 chr11 50022787 50022981 -71820875 + ID_B1 SINE B4 26 222 -2 6 966 61 37 0 0 chr11 50023095 50023177 -71820679 + AT_rich Low_complexity Low_complexity 1 82 0 6 966 335 186 57 0 chr11 50023243 50023313 -71820543 + ID SINE ID 1 74 -150 6 966 387 277 89 0 chr11 50023478 50023590 -71820266 + B1F1 SINE Alu 22 143 -6 6 966 21 0 0 0 chr11 50024130 50024151 -71819705 + GC_rich Low_complexity Low_complexity 1 21 0 6 966 186 43 0 0 chr11 50024965 50024988 -71818868 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 966 465 19 0 0 chr11 50024995 50025049 -71818807 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 966 264 312 113 26 chr11 50025140 50025255 -71818601 + PB1 SINE Alu 1 125 -2 6 966 261 222 148 0 chr11 50025256 50025337 -71818519 + PB1D10 SINE Alu 25 117 0 6 966 429 291 9 200 chr11 50025516 50025731 -71818125 + ID_B1 SINE B4 6 179 -45 7 966 458 257 0 9 chr11 50025638 50025748 -71818108 + PB1D10 SINE Alu 7 115 -2 7 966 1166 68 0 13 chr11 50025755 50025905 -71817951 + B1_Mus1 SINE Alu 1 148 0 7 966 1042 81 0 0 chr11 50027272 50027420 -71816436 - B2_Mm2 SINE B2 -47 148 1 7 966 517 42 0 0 chr11 50027473 50027545 -71816311 + B1_Mur4 SINE Alu 79 150 0 7 966 1492 70 0 5 chr11 50027604 50027792 -71816064 + B2_Mm2 SINE B2 2 188 -7 7 966 1390 95 5 5 chr11 50027799 50027981 -71815875 + B2_Mm1a SINE B2 1 183 -10 7 966 306 0 0 0 chr11 50027981 50028015 -71815841 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 7 966 1433 85 27 0 chr11 50028324 50028512 -71815344 + B2_Mm2 SINE B2 2 194 -1 7 966 1233 34 7 0 chr11 50028513 50028659 -71815197 + B1_Mus2 SINE Alu 1 147 0 7 966 303 93 0 0 chr11 50028723 50028766 -71815090 + (T)n Simple_repeat Simple_repeat 1 43 0 8 966 223 278 143 65 chr11 50029568 50029645 -71814211 - BC1_Mm scRNA scRNA 0 83 1 8 966 287 197 167 14 chr11 50030934 50031006 -71812850 + PB1D10 SINE Alu 27 109 -8 8 966 309 224 0 0 chr11 50031039 50031097 -71812759 + ID SINE ID 23 80 -144 8 966 258 326 64 21 chr11 50031661 50031689 -71812167 - B2_Mm1a SINE B2 -44 149 3 8 966 665 159 26 0 chr11 50031689 50031802 -71812054 - RSINE1 SINE B4 -46 119 4 8 966 568 292 7 0 chr11 50031802 50031939 -71811917 - B1F2 SINE Alu -1 148 11 8 966 467 260 16 16 chr11 50032527 50032652 -71811204 - RSINE1 SINE B4 0 165 41 8 966 297 219 23 5 chr11 50032752 50032858 -71810998 + B1F2 SINE Alu 12 120 0 8 966 355 297 18 82 chr11 50032920 50033030 -71810826 - B1_Mm SINE Alu -43 104 2 8 966 279 0 0 0 chr11 50033067 50033098 -71810758 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 966 369 222 25 0 chr11 50033101 50033182 -71810674 - RSINE1 SINE B4 -24 141 59 9 966 1218 80 102 0 chr11 50033280 50033456 -71810400 - B2_Mm2 SINE B2 -1 194 1 9 966 710 156 23 8 chr11 50033618 50033747 -71810109 + B1_Mur2 SINE Alu 14 144 -5 9 966 434 18 18 0 chr11 50033751 50033806 -71810050 + (TAA)n Simple_repeat Simple_repeat 2 57 0 9 966 319 269 0 0 chr11 50034053 50034120 -71809736 + ID_B1 SINE B4 104 170 -54 9 966 289 235 115 23 chr11 50034120 50034140 -71809716 + PB1D10 SINE Alu 23 117 0 9 966 753 144 71 8 chr11 50034187 50034313 -71809543 + B1_Mus1 SINE Alu 2 135 -13 9 966 486 271 29 22 chr11 50034589 50034725 -71809131 - B1F SINE Alu -3 146 10 9 966 1327 90 23 0 chr11 50034742 50034919 -71808937 + B2_Mm2 SINE B2 2 182 -13 9 966 424 67 368 19 chr11 50034931 50035037 -71808819 + B2_Mm2 SINE B2 47 189 -6 1 966 906 191 0 0 chr11 50035059 50035206 -71808650 - B1_Mus1 SINE Alu -1 147 1 1 966 377 194 0 14 chr11 50035238 50035311 -71808545 - ID_B1 SINE B4 -7 217 146 1 966 420 223 236 12 chr11 50035320 50035503 -71808353 - B3 SINE B2 -14 202 3 1 966 296 358 71 48 chr11 50035590 50035698 -71808158 - Charlie4a DNA MER1_type -130 378 259 1 966 1331 88 28 0 chr11 50035698 50035880 -71807976 + B2_Mm2 SINE B2 2 188 -7 1 966 296 358 71 48 chr11 50035880 50036123 -71807733 - Charlie4a DNA MER1_type -250 258 19 1 966 355 258 0 31 chr11 50036170 50036266 -71807590 + B1_Mur1 SINE Alu 52 144 -5 1 966 333 0 0 0 chr11 50036271 50036308 -71807548 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 966 414 236 48 80 chr11 50036898 50037088 -71806768 - B3A SINE B2 0 195 3 1 966 219 286 48 83 chr11 50037091 50037175 -71806681 - B1_Mur1 SINE Alu -1 148 68 1 966 215 200 257 0 chr11 50037199 50037269 -71806587 - PB1D9 SINE Alu -15 105 18 1 966 391 267 0 0 chr11 50037531 50037617 -71806239 - B1F2 SINE Alu -16 133 48 1 966 205 161 0 0 chr11 50037648 50037679 -71806177 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 966 392 222 11 22 chr11 50037820 50037912 -71805944 - RSINE1 SINE B4 -20 145 55 1 966 22 0 0 0 chr11 50038179 50038201 -71805655 + GC_rich Low_complexity Low_complexity 1 22 0 1 966 232 269 6 64 chr11 50038961 50039132 -71804724 + C-rich Low_complexity Low_complexity 6 166 0 1 966 690 148 96 0 chr11 50041721 50041835 -71802021 + B1_Mur4 SINE Alu 3 118 -32 1 966 396 0 0 0 chr11 50041835 50041879 -71801977 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 966 690 148 96 0 chr11 50041879 50041899 -71801957 + B1_Mur4 SINE Alu 119 149 -1 1 966 193 229 323 0 chr11 50043016 50043112 -71800744 - L2c LINE L2 -223 3164 3038 1 966 189 0 0 0 chr11 50043167 50043188 -71800668 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 1 966 308 309 103 0 chr11 50049210 50049228 -71794628 - ID_B1 SINE B4 -14 210 126 1 966 408 222 141 0 chr11 50049228 50049327 -71794529 - B1F SINE Alu -36 113 1 1 966 1606 37 11 0 chr11 50053477 50053667 -71790189 + B2_Mm1t SINE B2 2 193 0 1 966 380 200 173 0 chr11 50054337 50054447 -71789409 + PB1D10 SINE Alu 20 148 -1 1 966 1030 124 0 0 chr11 50054487 50054632 -71789224 + B1_Mus1 SINE Alu 2 146 -2 1 966 303 365 29 7 chr11 50054642 50054780 -71789076 - L1MC4a LINE L1 -66 7816 7676 1 966 277 271 0 55 chr11 50054820 50054924 -71788932 + L1MB7 LINE L1 5885 5982 -196 1 966 316 345 35 0 chr11 50054924 50054962 -71788894 - ID_B1 SINE B4 -106 118 7 1 966 328 286 0 0 chr11 50054962 50055032 -71788824 - tRNA-Ala-GCY_ tRNA tRNA -5 70 1 1 966 228 67 0 0 chr11 50055055 50055085 -71788771 + (A)n Simple_repeat Simple_repeat 1 30 0 1 966 402 278 38 38 chr11 50055186 50055317 -71788539 + B4 SINE B4 67 197 -95 1 966 640 162 0 5 chr11 50055214 50055333 -71788523 + B1_Mur1 SINE Alu 6 120 0 1 966 406 307 133 26 chr11 50055377 50055641 -71788215 - B4A SINE B4 0 292 1 1 966 400 296 121 0 chr11 50055789 50055921 -71787935 + B1F SINE Alu 1 148 -1 1 966 902 126 82 0 chr11 50056022 50056157 -71787699 + B1_Mus2 SINE Alu 1 146 -1 1 966 786 73 0 0 chr11 50056327 50056437 -71787419 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 966 409 247 71 0 chr11 50056603 50056688 -71787168 - B1_Mur2 SINE Alu -57 92 2 1 966 319 247 11 33 chr11 50056610 50056702 -71787154 - MT2B LTR ERVL -361 240 151 1 966 513 250 103 59 chr11 50056757 50056893 -71786963 - ID_B1 SINE B4 -11 213 72 1 966 342 0 0 0 chr11 50056904 50056942 -71786914 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1 966 230 294 29 10 chr11 50056947 50057050 -71786806 - L1M4 LINE L1 -2310 3836 3732 1 966 280 349 73 9 chr11 50057113 50057223 -71786633 + PB1D10 SINE Alu 1 117 0 1 966 1097 56 20 27 chr11 50057611 50057759 -71786097 - B1_Mm SINE Alu 0 147 1 1 966 396 0 0 0 chr11 50057839 50057883 -71785973 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 966 527 256 135 5 chr11 50057935 50058127 -71785729 - ID_B1 SINE B4 -4 220 4 1 966 1121 288 56 3 chr11 50058319 50058622 -71785234 - MER2 DNA MER2_type -4 341 23 1 966 362 164 0 0 chr11 50058662 50058717 -71785139 + PB1D10 SINE Alu 49 103 -14 1 966 340 260 290 17 chr11 50059170 50059339 -71784517 - ID_B1 SINE B4 -1 223 9 1 966 579 51 13 0 chr11 50059389 50059467 -71784389 - B1_Mus2 SINE Alu 0 147 69 1 966 576 200 104 0 chr11 50059470 50059605 -71784251 - B1F2 SINE Alu 0 149 1 1 966 341 231 31 157 chr11 50059919 50060078 -71783778 - MT2B LTR ERVL -288 313 175 1 966 694 137 36 64 chr11 50059949 50060089 -71783767 - B1_Mur4 SINE Alu -14 136 1 1 966 254 246 0 0 chr11 50060146 50060203 -71783653 - B3 SINE B2 -3 213 157 1 966 539 309 70 23 chr11 50060210 50060382 -71783474 + ID_B1 SINE B4 44 223 -1 1 966 326 299 59 44 chr11 50060243 50060570 -71783286 - RMER17D2 LTR ERVK -188 621 290 1 966 417 200 44 11 chr11 50060570 50060661 -71783195 + B2_Mm2 SINE B2 1 94 -101 1 966 1000 124 0 7 chr11 50060722 50060868 -71782988 + B1_Mur4 SINE Alu 4 148 -2 1 966 1180 188 19 0 chr11 50060898 50061105 -71782751 + B3 SINE B2 2 212 -4 1 966 463 267 8 24 chr11 50061132 50061255 -71782601 + B1F2 SINE Alu 13 135 -14 1 966 1427 39 78 6 chr11 50061705 50061865 -71781991 + B2_Mm2 SINE B2 2 175 -20 1 966 1160 63 6 22 chr11 50061865 50062043 -71781813 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 1 966 1427 39 78 6 chr11 50062043 50062061 -71781795 + B2_Mm2 SINE B2 176 193 -2 1 966 817 199 87 6 chr11 50062195 50062367 -71781489 + B3 SINE B2 30 215 -1 1 966 796 259 15 10 chr11 50062705 50062900 -71780956 - B3 SINE B2 0 216 21 1 966 286 318 88 0 chr11 50063132 50063280 -71780576 - L1MC4 LINE L1 -153 7889 7729 1 966 592 150 10 0 chr11 50063359 50063459 -71780397 - B1_Mur2 SINE Alu -34 115 15 1 966 312 182 10 111 chr11 50063370 50063469 -71780387 - MT2B2 LTR ERVL -327 257 169 1 966 709 236 25 50 chr11 50063475 50063676 -71780180 - B3A SINE B2 0 198 3 1 966 318 50 0 0 chr11 50063676 50063716 -71780140 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1 966 189 0 0 0 chr11 50063716 50063737 -71780119 + (T)n Simple_repeat Simple_repeat 1 21 0 1 966 1230 41 0 0 chr11 50063737 50063884 -71779972 - B1_Mus1 SINE Alu 0 148 2 1 966 976 252 154 56 chr11 50063974 50064499 -71779357 - RMER13A LTR ERVK -133 727 99 1 966 1249 54 0 0 chr11 50064530 50064677 -71779179 - B1_Mus1 SINE Alu 0 148 2 1 966 189 0 0 0 chr11 50064686 50064707 -71779149 + (TTTTC)n Simple_repeat Simple_repeat 4 24 0 1 966 1318 95 26 5 chr11 50064707 50064898 -71778958 - B2_Mm2 SINE B2 0 195 1 1 966 1957 153 24 12 chr11 50065026 50065357 -71778499 - MTC LTR MaLR -72 349 15 1 966 189 0 0 0 chr11 50065539 50065560 -71778296 + (TTG)n Simple_repeat Simple_repeat 3 23 0 1 966 2709 87 68 22 chr11 50065570 50065981 -71777875 - RLTR23 LTR ERV1 0 430 1 1 966 527 237 8 8 chr11 50066711 50066830 -71777026 - PB1D9 SINE Alu 0 120 2 1 966 1069 209 29 0 chr11 50067164 50067370 -71776486 - B3 SINE B2 -4 212 1 1 966 396 184 68 11 chr11 50067927 50068015 -71775841 - PB1D7 SINE Alu 0 120 28 1 966 253 327 62 0 chr11 50068317 50068430 -71775426 - HERV16-int LTR ERVL -3913 1083 964 1 966 475 274 35 66 chr11 50068599 50068833 -71775023 + B1_Mus1 SINE Alu 2 220 -94 1 966 25 0 0 0 chr11 50069147 50069172 -71774684 + AT_rich Low_complexity Low_complexity 1 25 0 1 967 225 303 36 95 chr11 50072379 50072457 -71771399 - RSINE1 SINE B4 0 165 93 1 967 323 156 15 45 chr11 50072457 50072508 -71771348 - MTD LTR MaLR 0 421 373 1 967 849 178 7 0 chr11 50072508 50072643 -71771213 - B1_Mur2 SINE Alu -11 138 3 1 967 928 147 166 30 chr11 50072643 50072848 -71771008 - MTD LTR MaLR -49 372 42 1 967 291 289 0 12 chr11 50073339 50073423 -71770433 + ID4 SINE ID 1 83 0 1 967 437 257 17 58 chr11 50073926 50074046 -71769810 - PB1D10 SINE Alu -2 115 1 1 967 518 269 17 4 chr11 50074046 50074074 -71769782 - ID SINE ID -141 83 60 1 967 804 96 97 56 chr11 50074102 50074246 -71769610 + B1_Mur4 SINE Alu 1 150 0 1 967 322 272 130 65 chr11 50074728 50074897 -71768959 + L1MB8 LINE L1 5998 6177 -1 1 967 998 106 21 0 chr11 50074910 50075052 -71768804 + B1_Mur4 SINE Alu 6 150 0 1 967 457 250 93 8 chr11 50075374 50075503 -71768353 - B1F1 SINE Alu -9 140 1 1 967 577 255 60 7 chr11 50075656 50075806 -71768050 - RSINE1 SINE B4 -4 161 4 1 967 1307 83 0 0 chr11 50075834 50076003 -71767853 + B2_Mm2 SINE B2 1 169 -26 1 967 1331 65 26 32 chr11 50076004 50076194 -71767662 - B2_Mm2 SINE B2 -6 189 1 1 967 597 200 17 17 chr11 50076223 50076340 -71767516 - PB1D9 SINE Alu -2 118 2 1 967 520 275 14 27 chr11 50076355 50076501 -71767355 - B3A SINE B2 -8 190 47 1 967 279 104 0 0 chr11 50076784 50076832 -71767024 + (CTG)n Simple_repeat Simple_repeat 1 48 0 1 967 507 208 65 9 chr11 50077140 50077247 -71766609 + PB1D9 SINE Alu 7 119 -1 1 967 765 130 42 26 chr11 50077299 50077477 -71766379 + B3 SINE B2 2 185 -10 2 967 1199 54 7 0 chr11 50077477 50077624 -71766232 + B1_Mus1 SINE Alu 1 148 0 2 967 417 288 86 0 chr11 50077842 50077981 -71765875 - B4A SINE B4 -9 283 133 2 967 487 174 76 0 chr11 50078105 50078197 -71765659 - PB1D7 SINE Alu -13 107 9 2 967 551 181 25 41 chr11 50078200 50078321 -71765535 - PB1D9 SINE Alu -1 119 1 2 967 213 39 0 0 chr11 50078336 50078362 -71765494 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 967 1015 109 97 0 chr11 50078365 50078530 -71765326 - B2_Mm2 SINE B2 -14 181 1 2 967 856 151 14 14 chr11 50078650 50078798 -71765058 - B1_Mus1 SINE Alu 0 148 1 2 967 298 238 147 10 chr11 50078843 50078945 -71764911 + ID_B1 SINE B4 101 216 -8 2 967 230 200 167 0 chr11 50079757 50079817 -71764039 - RLTR9A LTR ERVK -291 77 8 2 967 1157 209 185 10 chr11 50080934 50081248 -71762608 + ORR1D1 LTR MaLR 6 374 0 2 967 315 0 0 0 chr11 50081520 50081555 -71762301 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 967 1215 54 0 0 chr11 50081712 50081859 -71761997 + B1_Mus1 SINE Alu 2 148 0 2 967 199 271 70 40 chr11 50081889 50081989 -71761867 - L2c LINE L2 -43 3344 3242 2 967 364 260 39 59 chr11 50082233 50082335 -71761521 + PB1D10 SINE Alu 1 100 -17 2 967 805 166 98 44 chr11 50082334 50082517 -71761339 - B2_Mm2 SINE B2 -2 193 1 2 967 755 210 32 91 chr11 50082784 50082904 -71760952 - B3 SINE B2 -9 207 95 2 967 1276 66 77 0 chr11 50082904 50083085 -71760771 - B2_Mm2 SINE B2 0 195 1 2 967 755 210 32 91 chr11 50083085 50083184 -71760672 - B3 SINE B2 -122 94 1 2 967 539 186 29 0 chr11 50083354 50083456 -71760400 + B3 SINE B2 1 105 -111 2 967 793 266 23 12 chr11 50084409 50084580 -71759276 - B3 SINE B2 -25 191 19 2 967 289 135 0 133 chr11 50085070 50085130 -71758726 - B1_Mur3 SINE Alu -5 144 93 2 967 207 0 0 0 chr11 50086019 50086042 -71757814 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 2 967 481 250 26 77 chr11 50086042 50086159 -71757697 - B1_Mm SINE Alu -9 111 1 2 967 451 226 92 110 chr11 50086159 50086237 -71757619 - B4 SINE B4 -205 87 13 2 967 245 253 79 13 chr11 50086172 50086248 -71757608 - ID4_ SINE ID -1 82 2 2 967 267 302 83 0 chr11 50086601 50086697 -71757159 - B1F SINE Alu -45 104 1 2 967 1077 122 55 6 chr11 50086772 50086954 -71756902 - B2_Mm2 SINE B2 -4 191 1 2 967 984 62 15 0 chr11 50087294 50087424 -71756432 + B1_Mm SINE Alu 16 147 0 2 967 600 14 0 0 chr11 50087430 50087499 -71756357 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 967 616 176 39 72 chr11 50087506 50087659 -71756197 + B1_Mur4 SINE Alu 1 148 -2 2 967 213 305 0 0 chr11 50087905 50087964 -71755892 - ID_B1 SINE B4 -68 156 98 2 967 1445 58 31 16 chr11 50087986 50088177 -71755679 - B2_Mm2 SINE B2 0 195 2 2 967 295 188 78 0 chr11 50088331 50088395 -71755461 - ID_B1 SINE B4 -2 222 154 2 967 256 310 34 34 chr11 50089009 50089199 -71754657 + L1MB8 LINE L1 5989 6182 -2 2 967 381 247 74 0 chr11 50089207 50089288 -71754568 + RSINE1 SINE B4 3 89 -76 2 967 425 308 56 6 chr11 50089312 50089327 -71754529 - B4A SINE B4 -5 287 273 2 967 216 0 0 0 chr11 50089327 50089351 -71754505 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 967 425 308 56 6 chr11 50089351 50089495 -71754361 - B4A SINE B4 -20 272 121 2 967 315 328 149 0 chr11 50089670 50089865 -71753991 - HAL1 LINE L1 -1091 1416 1193 2 967 228 67 0 0 chr11 50089868 50089898 -71753958 + (CCCA)n Simple_repeat Simple_repeat 2 31 0 2 967 804 136 20 85 chr11 50089911 50090064 -71753792 - B1_Mur3 SINE Alu -6 143 1 2 967 511 223 107 71 chr11 50090105 50090245 -71753611 - RSINE1 SINE B4 0 165 21 2 967 483 265 75 10 chr11 50090279 50090431 -71753425 - B3A SINE B2 -1 194 27 2 967 301 139 95 66 chr11 50090429 50090523 -71753333 - PB1D10 SINE Alu 0 127 44 2 967 524 147 18 94 chr11 50090547 50090660 -71753196 - B1_Mur4 SINE Alu 0 150 12 2 967 877 196 92 0 chr11 50090664 50090848 -71753008 - B3 SINE B2 -15 201 1 2 967 330 247 52 0 chr11 50090898 50090975 -71752881 + ID4_ SINE ID 2 82 -1 2 967 336 326 21 11 chr11 50091006 50091099 -71752757 + PB1 SINE Alu 34 127 0 2 967 219 326 112 0 chr11 50091131 50091229 -71752627 + PB1D10 SINE Alu 3 111 -6 2 967 230 275 14 68 chr11 50091819 50091893 -71751963 + B4 SINE B4 4 73 -219 2 967 249 258 62 41 chr11 50091835 50091932 -71751924 + BC1_Mm scRNA scRNA 15 113 -39 2 967 225 0 0 0 chr11 50092184 50092209 -71751647 + (A)n Simple_repeat Simple_repeat 1 25 0 2 967 448 271 41 48 chr11 50092369 50092516 -71751340 + ID_B1 SINE B4 78 223 -1 2 967 246 309 94 16 chr11 50092739 50092867 -71750989 + MIRb SINE MIR 60 197 -71 2 967 424 143 0 49 chr11 50092962 50093043 -71750813 + B1_Mus2 SINE Alu 41 117 -30 2 967 278 317 135 92 chr11 50093097 50093281 -71750575 + B4A SINE B4 48 229 -63 2 967 1151 51 0 0 chr11 50093281 50093418 -71750438 + B1_Mus2 SINE Alu 1 137 -10 2 967 257 0 30 0 chr11 50093418 50093451 -71750405 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 967 278 317 135 92 chr11 50093451 50093494 -71750362 + B4A SINE B4 230 285 -7 2 967 371 173 26 13 chr11 50093563 50093639 -71750217 + B4 SINE B4 9 85 -207 2 967 275 280 26 39 chr11 50093738 50093816 -71750040 + ID4_ SINE ID 7 83 0 2 967 549 232 68 7 chr11 50093830 50094009 -71749847 - L1MB2 LINE L1 -131 6037 5844 2 967 278 260 14 0 chr11 50094020 50094093 -71749763 + B4A SINE B4 1 74 -218 2 967 279 0 0 0 chr11 50094095 50094126 -71749730 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 967 729 206 28 56 chr11 50094241 50094421 -71749435 + B3 SINE B2 1 175 -41 2 967 254 323 30 10 chr11 50094440 50094540 -71749316 + B4 SINE B4 2 103 -189 2 967 423 314 89 50 chr11 50094668 50094877 -71748979 + Charlie2b DNA MER1_type 2014 2228 -554 2 967 528 142 221 16 chr11 50094877 50094999 -71748857 + B1_Mur2 SINE Alu 1 147 -2 2 967 423 314 89 50 chr11 50094999 50095047 -71748809 + Charlie2b DNA MER1_type 2229 2281 -501 2 967 225 222 164 60 chr11 50095328 50095395 -71748461 + ID4 SINE ID 4 77 -6 2 967 533 277 70 129 chr11 50095397 50095513 -71748343 + Charlie2b DNA MER1_type 2320 2414 -368 2 967 1391 77 11 0 chr11 50095513 50095694 -71748162 - B2_Mm1t SINE B2 -10 183 1 2 967 533 277 70 129 chr11 50095694 50095950 -71747906 + Charlie2b DNA MER1_type 2415 2670 -112 2 967 1486 58 11 0 chr11 50096047 50096237 -71747619 + B2_Mm1a SINE B2 1 192 -1 2 967 266 188 104 104 chr11 50096373 50096450 -71747406 - ID2 SINE ID -6 77 1 2 967 742 201 21 0 chr11 50096518 50096662 -71747194 + B1_Mus1 SINE Alu 1 147 -1 2 967 230 309 116 11 chr11 50097290 50097385 -71746471 - BC1_Mm scRNA scRNA -47 105 1 2 967 216 0 0 0 chr11 50097508 50097532 -71746324 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 967 24 32 0 0 chr11 50097648 50097679 -71746177 + AT_rich Low_complexity Low_complexity 1 31 0 2 967 3999 157 87 52 chr11 50097689 50098271 -71745585 + MYSERV16_I-int LTR ERVK 1358 1959 -367 2 967 1273 34 0 0 chr11 50098271 50098417 -71745439 - B1_Mus1 SINE Alu -1 147 2 2 967 3999 157 87 52 chr11 50098417 50098770 -71745086 + MYSERV16_I-int LTR ERVK 1960 2325 -1 2 967 2206 208 92 53 chr11 50098773 50099296 -71744560 + RLTR20B2 LTR ERVK 6 548 -12 2 967 199 330 80 0 chr11 50099397 50099485 -71744371 + L2a LINE L2 2997 3091 -335 2 967 636 147 0 38 chr11 50099527 50099633 -71744223 + PB1D9 SINE Alu 1 102 -18 2 967 347 252 76 19 chr11 50099807 50099912 -71743944 + L2a LINE L2 3315 3425 -1 2 967 208 250 0 0 chr11 50099912 50099952 -71743904 + A-rich Low_complexity Low_complexity 5 44 0 2 967 205 286 106 12 chr11 50100042 50100127 -71743729 - L2 LINE L2 -1357 2062 1970 2 967 624 185 0 25 chr11 50100564 50100686 -71743170 + PB1D7 SINE Alu 1 119 -1 2 967 233 320 83 39 chr11 50101050 50101206 -71742650 + RSINE1 SINE B4 2 164 -1 2 967 333 0 0 0 chr11 50101214 50101251 -71742605 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 967 350 57 19 0 chr11 50101570 50101623 -71742233 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 967 258 234 130 0 chr11 50101675 50101752 -71742104 + RSINE1 SINE B4 3 89 -76 2 967 736 208 0 0 chr11 50102166 50102286 -71741570 + B1_Mus2 SINE Alu 1 120 -27 2 967 874 213 42 28 chr11 50102332 50102545 -71741311 - B3 SINE B2 0 216 1 2 967 466 302 63 0 chr11 50102551 50102677 -71741179 - B1F2 SINE Alu -5 144 11 2 967 254 301 22 78 chr11 50102600 50102690 -71741166 - MT2B LTR ERVL -357 244 160 2 967 21 0 0 0 chr11 50102748 50102769 -71741087 + AT_rich Low_complexity Low_complexity 1 21 0 2 967 1963 142 108 9 chr11 50102975 50103309 -71740547 + ORR1B2 LTR MaLR 1 367 0 2 967 660 172 119 0 chr11 50103573 50103707 -71740149 + B1_Mur4 SINE Alu 1 150 0 2 967 218 119 48 0 chr11 50103747 50103789 -71740067 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 2 967 199 240 156 26 chr11 50104012 50104089 -71739767 - MIRc SINE MIR -66 202 116 2 967 200 254 0 0 chr11 50105273 50105332 -71738524 + G-rich Low_complexity Low_complexity 6 64 0 2 967 24 67 0 0 chr11 50105563 50105608 -71738248 + GC_rich Low_complexity Low_complexity 1 45 0 2 967 935 109 40 13 chr11 50106853 50107002 -71736854 - B2_Mm2 SINE B2 -41 154 2 2 967 241 295 38 25 chr11 50107611 50107691 -71736165 - ID SINE ID -142 82 2 2 967 231 114 0 0 chr11 50109451 50109486 -71734370 + (A)n Simple_repeat Simple_repeat 1 35 0 2 967 754 234 64 0 chr11 50110035 50110206 -71733650 - B3 SINE B2 0 216 35 2 967 432 274 53 40 chr11 50110201 50110353 -71733503 + ID_B1 SINE B4 64 217 -7 2 967 378 175 37 12 chr11 50110355 50110436 -71733420 + PB1D9 SINE Alu 38 120 0 3 967 187 173 19 19 chr11 50110783 50110836 -71733020 + CT-rich Low_complexity Low_complexity 1 53 0 3 967 957 93 42 28 chr11 50111875 50112019 -71731837 + B1_Mus1 SINE Alu 1 146 -2 3 967 666 222 34 20 chr11 50112289 50112436 -71731420 + B1_Mur3 SINE Alu 1 149 0 3 967 243 303 0 29 chr11 50113194 50113262 -71730594 + ID4 SINE ID 2 67 -16 3 967 186 43 0 0 chr11 50113315 50113338 -71730518 + (GTTTG)n Simple_repeat Simple_repeat 3 25 0 3 967 1589 147 256 9 chr11 50113903 50114219 -71729637 + ORR1B1 LTR MaLR 1 394 0 3 967 466 178 109 0 chr11 50114771 50114872 -71728984 - PB1D9 SINE Alu -8 112 1 3 967 342 0 0 0 chr11 50114942 50114980 -71728876 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 3 967 599 161 91 25 chr11 50114980 50115101 -71728755 - B1_Mus2 SINE Alu -1 146 18 3 967 222 171 0 0 chr11 50115116 50115151 -71728705 + B3 SINE B2 16 50 -166 3 967 329 308 37 46 chr11 50115533 50115751 -71728105 + L1M2 LINE L1 5293 5508 -792 3 967 870 247 185 57 chr11 50115759 50116197 -71727659 + L1MB7 LINE L1 5582 6075 -109 3 967 1057 83 20 7 chr11 50116281 50116427 -71727429 + B1_Mus1 SINE Alu 1 148 0 3 967 231 349 75 0 chr11 50116443 50116549 -71727307 + PB1D10 SINE Alu 1 114 -3 3 967 442 257 109 40 chr11 50116591 50116765 -71727091 + B3 SINE B2 1 186 -30 3 967 1259 20 0 7 chr11 50116810 50116957 -71726899 + B1_Mm SINE Alu 2 147 0 3 967 724 159 129 0 chr11 50117187 50117319 -71726537 + B1_Mur3 SINE Alu 1 149 0 3 967 429 239 16 66 chr11 50117594 50117715 -71726141 - PB1D10 SINE Alu 0 117 3 3 967 279 0 0 0 chr11 50118245 50118276 -71725580 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 967 461 214 0 30 chr11 50118278 50118379 -71725477 - B1_Mur3 SINE Alu -1 148 51 3 967 214 359 82 72 chr11 50118282 50118477 -71725379 - ID_B1 SINE B4 -5 219 23 3 967 666 295 43 0 chr11 50118504 50118711 -71725145 + B3 SINE B2 1 216 0 3 967 762 190 0 0 chr11 50118714 50118851 -71725005 + B3 SINE B2 1 137 -79 3 967 281 89 0 22 chr11 50118859 50118905 -71724951 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 967 1107 64 14 0 chr11 50119016 50119156 -71724700 + B1_Mus1 SINE Alu 1 142 -6 3 967 204 67 0 0 chr11 50119160 50119190 -71724666 + (A)n Simple_repeat Simple_repeat 1 30 0 3 967 300 278 133 0 chr11 50119199 50119289 -71724567 + ID_B1 SINE B4 86 187 -37 3 967 611 208 38 8 chr11 50119322 50119453 -71724403 + B1_Mur2 SINE Alu 7 141 -8 3 967 318 288 67 9 chr11 50119489 50119594 -71724262 + RSINE1 SINE B4 20 130 -35 3 967 438 266 147 0 chr11 50119618 50119761 -71724095 + B3 SINE B2 1 164 -52 3 967 564 42 0 0 chr11 50119761 50119832 -71724024 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 967 637 127 76 0 chr11 50119832 50119950 -71723906 + B1_Mus2 SINE Alu 21 147 0 3 967 26 30 0 0 chr11 50120080 50120113 -71723743 + AT_rich Low_complexity Low_complexity 1 33 0 3 967 688 118 0 18 chr11 50120156 50120268 -71723588 - Lx LINE L1 -72 6582 6473 3 967 884 61 116 43 chr11 50120560 50120698 -71723158 - B1_Mus1 SINE Alu 0 148 1 3 967 239 213 25 51 chr11 50121448 50121527 -71722329 + B1_Mur2 SINE Alu 73 149 0 3 967 321 246 0 9 chr11 50121682 50121772 -71722084 - ID4_ SINE ID -65 87 1 3 967 542 200 41 75 chr11 50122764 50122910 -71720946 + B1_Mm SINE Alu 1 141 -6 3 967 406 168 228 0 chr11 50122948 50123049 -71720807 + B1_Mur1 SINE Alu 15 138 -11 3 967 1163 196 182 3 chr11 50123049 50123418 -71720438 + Lx9 LINE L1 7210 7644 0 3 967 474 290 38 0 chr11 50123452 50123583 -71720273 - B3A SINE B2 -41 157 22 3 967 553 219 81 74 chr11 50124777 50124837 -71719019 + B1_Mur2 SINE Alu 1 61 -88 3 967 1044 58 244 6 chr11 50124837 50124993 -71718863 - B2_Mm2 SINE B2 -1 194 2 3 967 553 219 81 74 chr11 50124993 50125080 -71718776 + B1_Mur2 SINE Alu 62 149 0 3 967 1029 71 50 0 chr11 50125308 50125449 -71718407 + B1_Mus1 SINE Alu 1 148 0 3 967 293 330 71 9 chr11 50125687 50125800 -71718056 + PB1D7 SINE Alu 1 120 0 3 967 227 309 14 14 chr11 50125820 50125889 -71717967 + ID_B1 SINE B4 118 186 -38 3 967 240 35 0 0 chr11 50127000 50127029 -71716827 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 967 189 0 0 0 chr11 50127129 50127150 -71716706 + (A)n Simple_repeat Simple_repeat 1 21 0 3 967 1121 56 42 0 chr11 50127387 50127529 -71716327 + B1_Mus1 SINE Alu 1 148 0 3 967 302 261 142 35 chr11 50127606 50127769 -71716087 + L1M3 LINE L1 5525 5723 -460 3 967 1030 147 122 0 chr11 50127809 50128006 -71715850 + URR1A DNA MER1_type 1 221 -5 3 967 1142 62 14 0 chr11 50128017 50128162 -71715694 - B1_Mus2 SINE Alu 0 147 1 3 967 604 234 127 77 chr11 50128341 50128522 -71715334 + B3A SINE B2 9 198 0 3 967 420 126 512 0 chr11 50128614 50128741 -71715115 + B2_Mm2 SINE B2 2 193 -2 3 967 268 221 165 15 chr11 50128744 50128877 -71714979 + L1MC3 LINE L1 5184 5336 -810 3 967 357 254 159 3 chr11 50128933 50129138 -71714718 + L1MC3 LINE L1 5720 5949 -230 3 967 248 113 113 0 chr11 50129155 50129208 -71714648 + L1MC3 LINE L1 6065 6123 -221 3 967 396 191 209 0 chr11 50129444 50129559 -71714297 + B1_Mm SINE Alu 9 147 0 3 967 310 256 60 120 chr11 50129629 50129762 -71714094 - RSINE1 SINE B4 -33 132 8 3 967 1620 42 0 0 chr11 50129798 50129989 -71713867 + B2_Mm1a SINE B2 1 191 -2 3 967 188 35 35 0 chr11 50129991 50130020 -71713836 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 967 998 118 129 0 chr11 50130022 50130192 -71713664 + B2_Mm2 SINE B2 1 192 -3 3 967 243 292 0 0 chr11 50130417 50130482 -71713374 - ID4_ SINE ID -17 66 2 3 967 324 238 36 90 chr11 50131088 50131199 -71712657 + PB1D10 SINE Alu 13 117 0 3 967 468 294 86 22 chr11 50131199 50131338 -71712518 + RSINE1 SINE B4 1 148 -17 3 967 25 0 0 0 chr11 50131401 50131426 -71712430 + AT_rich Low_complexity Low_complexity 1 25 0 3 967 1400 39 27 6 chr11 50131760 50131943 -71711913 + L1Md_F3 LINE L1 6398 6584 0 3 967 1365 83 0 50 chr11 50131957 50132116 -71711740 + B2_Mm1t SINE B2 2 160 -33 3 967 279 0 0 0 chr11 50132116 50132147 -71711709 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 967 1365 83 0 50 chr11 50132147 50132189 -71711667 + B2_Mm1t SINE B2 161 193 0 3 967 332 255 90 60 chr11 50132345 50132445 -71711411 + RSINE1 SINE B4 6 108 -57 3 967 393 280 135 8 chr11 50132502 50132635 -71711221 - B3 SINE B2 -19 197 48 3 967 265 123 358 19 chr11 50132793 50132902 -71710954 - B2_Mm2 SINE B2 -3 192 47 3 967 1162 93 23 23 chr11 50132949 50133125 -71710731 - B2_Mm1t SINE B2 -14 179 4 3 967 843 239 28 28 chr11 50133850 50134065 -71709791 - B3 SINE B2 -1 215 1 3 967 244 211 77 0 chr11 50134146 50134198 -71709658 + 4.5SRNA scRNA scRNA 32 87 -7 3 967 378 236 317 66 chr11 50134463 50134690 -71709166 - B4A SINE B4 -7 285 2 3 967 1155 88 0 0 chr11 50135079 50135227 -71708629 - B1_Mus1 SINE Alu 0 148 1 3 967 398 275 75 0 chr11 50135320 50135440 -71708416 - RSINE1 SINE B4 -29 136 8 3 967 517 193 109 84 chr11 50135507 50135626 -71708230 + B3A SINE B2 2 123 -75 3 967 281 316 58 45 chr11 50135664 50135820 -71708036 + RSINE1 SINE B4 2 159 -6 3 967 23 0 0 0 chr11 50135883 50135906 -71707950 + AT_rich Low_complexity Low_complexity 1 23 0 3 967 309 353 0 0 chr11 50135910 50135995 -71707861 + PB1 SINE Alu 7 91 -36 3 967 191 36 0 35 chr11 50136289 50136318 -71707538 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 967 723 154 0 15 chr11 50136318 50136450 -71707406 - B1_Mus2 SINE Alu -12 135 6 3 967 400 292 243 27 chr11 50136521 50136669 -71707187 + B3A SINE B2 3 182 -16 3 967 21 0 0 0 chr11 50136669 50136690 -71707166 + AT_rich Low_complexity Low_complexity 1 21 0 3 967 1117 112 77 0 chr11 50136712 50136881 -71706975 - B2_Mm2 SINE B2 -12 183 2 3 967 371 157 489 21 chr11 50136969 50137108 -71706748 + B3 SINE B2 8 211 -5 3 967 219 36 0 0 chr11 50137341 50137369 -71706487 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 3 967 327 253 2 37 chr11 50138249 50138360 -71705496 + MIR SINE MIR 28 131 -77 3 967 533 222 84 9 chr11 50140473 50140593 -71703263 + RSINE1 SINE B4 1 130 -35 3 967 354 232 39 39 chr11 50140651 50140754 -71703102 - RLTR42-int LTR ERVK -3550 1972 1870 3 967 920 49 8 0 chr11 50141444 50141567 -71702289 + B1_Mus1 SINE Alu 25 148 0 3 967 1188 60 24 0 chr11 50141585 50141751 -71702105 - B2_Mm2 SINE B2 -25 170 1 3 967 383 253 140 65 chr11 50141832 50142018 -71701838 - B4A SINE B4 -2 290 91 3 967 885 168 7 0 chr11 50142098 50142241 -71701615 - B1_Mus1 SINE Alu 0 148 5 3 967 1042 199 0 126 chr11 50142276 50142523 -71701333 + B3 SINE B2 1 216 0 3 967 322 328 60 26 chr11 50142551 50142667 -71701189 - RSINE1 SINE B4 -8 157 38 3 967 1504 107 138 0 chr11 50142669 50142930 -71700926 - MTC LTR MaLR -2 419 123 3 967 1027 179 85 0 chr11 50142950 50143151 -71700705 - URR1B DNA MER1_type -5 220 3 3 967 684 138 0 0 chr11 50143151 50143256 -71700600 - MTC LTR MaLR -316 105 1 3 967 319 247 52 0 chr11 50143303 50143380 -71700476 - PB1D10 SINE Alu 0 117 37 3 967 342 0 0 0 chr11 50143381 50143419 -71700437 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 967 1509 36 5 15 chr11 50143599 50143795 -71700061 + L1Md_F2 LINE L1 6389 6582 0 4 967 310 314 62 55 chr11 50144135 50144280 -71699576 - B1_Mur3 SINE Alu -2 147 2 4 967 212 312 38 25 chr11 50144280 50144319 -71699537 - B4A SINE B4 -251 41 2 3 967 415 276 244 0 chr11 50144347 50144507 -71699349 - ID_B1 SINE B4 -9 215 17 4 967 513 243 21 35 chr11 50144557 50144702 -71699154 - RSINE1 SINE B4 -21 144 2 4 967 248 232 44 44 chr11 50144732 50144822 -71699034 - L1ME1 LINE L1 -64 6115 6026 4 967 225 0 0 0 chr11 50144831 50144856 -71699000 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 967 1073 53 23 0 chr11 50144858 50144990 -71698866 - B1_Mus2 SINE Alu -11 136 2 4 967 757 323 61 109 chr11 50145081 50145686 -71698170 - MER21B LTR ERV1 -194 669 94 4 967 551 265 93 42 chr11 50145722 50146155 -71697701 - RMER5 LTR ERV1 -5 529 33 4 967 1396 60 38 0 chr11 50146259 50146444 -71697412 - B2_Mm1t SINE B2 0 193 2 4 967 283 264 113 0 chr11 50146573 50146679 -71697177 + Tigger7 DNA MER2_type 1 118 -2373 4 967 435 38 0 0 chr11 50147054 50147107 -71696749 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 4 967 549 264 0 30 chr11 50147113 50147271 -71696585 - B1_Mur1 SINE Alu 0 149 9 4 967 646 248 59 0 chr11 50147305 50147458 -71696398 - RSINE1 SINE B4 0 165 4 4 967 225 0 0 0 chr11 50147471 50147496 -71696360 + (CCTA)n Simple_repeat Simple_repeat 1 25 0 4 967 815 194 71 0 chr11 50147497 50147667 -71696189 - B3 SINE B2 -33 183 2 4 967 407 277 10 0 chr11 50147700 50147801 -71696055 + PB1 SINE Alu 18 119 -8 4 967 224 296 0 0 chr11 50147828 50147882 -71695974 + B1F2 SINE Alu 1 54 -95 4 967 618 80 34 44 chr11 50147887 50148066 -71695790 + RMER6A LTR ERVK 1 220 -536 4 967 312 48 0 0 chr11 50148409 50148451 -71695405 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 967 303 213 57 105 chr11 50148522 50148627 -71695229 - PB1 SINE Alu 0 127 28 4 967 714 226 94 35 chr11 50148912 50149114 -71694742 + B3 SINE B2 1 214 -2 4 967 549 246 222 46 chr11 50149335 50149703 -71694153 - L1MB7 LINE L1 -320 5864 5432 4 967 503 190 14 14 chr11 50149932 50150071 -71693785 + CT-rich Low_complexity Low_complexity 1 139 0 4 967 278 281 11 58 chr11 50150081 50150168 -71693688 - RSINE1 SINE B4 0 165 83 4 967 355 265 102 0 chr11 50150396 50150494 -71693362 - B1F SINE Alu -7 142 35 4 967 239 250 0 0 chr11 50150733 50150785 -71693071 + ID_B1 SINE B4 107 158 -66 4 967 793 251 18 53 chr11 50150788 50151015 -71692841 + ID_B1 SINE B4 5 223 -1 4 967 588 165 0 55 chr11 50151303 50151412 -71692444 + B1_Mus1 SINE Alu 1 103 -45 4 967 407 231 106 0 chr11 50151657 50151761 -71692095 + PB1D10 SINE Alu 3 117 0 4 967 627 213 189 0 chr11 50151771 50151935 -71691921 + B3A SINE B2 2 196 -2 4 967 458 299 66 33 chr11 50151966 50152118 -71691738 + RSINE1 SINE B4 1 157 -8 4 967 258 319 0 0 chr11 50152292 50152361 -71691495 + ID4_ SINE ID 4 72 -11 4 967 657 234 73 0 chr11 50152370 50152507 -71691349 - B1_Mur1 SINE Alu -2 147 1 4 967 279 317 116 18 chr11 50152507 50152577 -71691279 - MT2B LTR ERVL -438 163 78 4 967 719 259 25 0 chr11 50152551 50152713 -71691143 + B3 SINE B2 35 200 -16 4 967 1225 61 0 0 chr11 50152713 50152860 -71690996 + B1_Mus2 SINE Alu 1 147 0 4 967 208 159 23 0 chr11 50152966 50153010 -71690846 + T-rich Low_complexity Low_complexity 5 49 0 4 967 488 152 0 0 chr11 50153022 50153101 -71690755 - B1_Mur4 SINE Alu -70 80 2 4 967 1202 68 0 0 chr11 50153142 50153288 -71690568 - B1_Mus1 SINE Alu 0 148 3 4 967 434 244 31 0 chr11 50153425 50153529 -71690327 + ID_B1 SINE B4 44 155 -69 4 967 1222 66 0 0 chr11 50153530 50153696 -71690160 + B2_Mm2 SINE B2 2 167 -28 4 967 25 0 0 0 chr11 50154231 50154256 -71689600 + AT_rich Low_complexity Low_complexity 1 25 0 4 967 1076 83 14 0 chr11 50154256 50154400 -71689456 - B1_Mus2 SINE Alu 0 147 2 4 967 280 236 111 0 chr11 50154412 50154484 -71689372 - ID4_ SINE ID -2 81 2 4 967 413 269 29 0 chr11 50154516 50154620 -71689236 - PB1D9 SINE Alu -12 108 2 4 967 764 189 7 33 chr11 50154645 50154798 -71689058 - B1_Mur3 SINE Alu 0 149 1 4 967 1094 58 0 35 chr11 50154818 50154961 -71688895 + B1_Mus1 SINE Alu 1 138 -10 4 967 188 0 74 0 chr11 50154961 50154988 -71688868 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 967 937 179 43 58 chr11 50155063 50155270 -71688586 + B3 SINE B2 3 206 -10 4 967 592 214 30 30 chr11 50155292 50155427 -71688429 - B1F2 SINE Alu 0 149 15 4 967 417 268 26 78 chr11 50155293 50155447 -71688409 - ID_B1 SINE B4 0 224 79 4 967 600 206 8 8 chr11 50155648 50155775 -71688081 - B1_Mur1 SINE Alu -21 128 2 4 967 432 0 0 0 chr11 50155775 50155823 -71688033 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 967 341 289 0 22 chr11 50155826 50155918 -71687938 - B3 SINE B2 -48 168 79 4 967 501 282 63 56 chr11 50155927 50156197 -71687659 - B4 SINE B4 -19 273 2 4 967 307 183 0 89 chr11 50156550 50156640 -71687216 - B1F SINE Alu -40 109 28 4 967 714 180 57 14 chr11 50156685 50156826 -71687030 + B1_Mur1 SINE Alu 3 149 0 4 967 276 325 36 101 chr11 50156837 50157005 -71686851 - RSINE1 SINE B4 -6 159 3 4 967 665 211 6 58 chr11 50157165 50157321 -71686535 + B1_Mur3 SINE Alu 2 149 0 4 967 234 0 0 0 chr11 50157321 50157347 -71686509 + (A)n Simple_repeat Simple_repeat 1 26 0 4 967 207 0 0 0 chr11 50157347 50157370 -71686486 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 967 776 185 24 46 chr11 50157376 50157554 -71686302 + B3 SINE B2 3 188 -7 4 967 1107 102 54 0 chr11 50157559 50157726 -71686130 + B2_Mm1t SINE B2 5 180 -13 4 967 309 107 316 26 chr11 50157757 50157871 -71685985 + B2_Mm2 SINE B2 47 193 -2 4 967 314 335 45 34 chr11 50158059 50158235 -71685621 + B4A SINE B4 111 288 -4 4 967 475 227 1 11 chr11 50158277 50158391 -71685465 + B3 SINE B2 29 141 -57 4 967 288 0 0 0 chr11 50158391 50158423 -71685433 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 967 463 91 0 0 chr11 50158471 50158537 -71685319 + B1_Mus1 SINE Alu 2 67 -81 4 967 1092 145 70 5 chr11 50158555 50158756 -71685100 - B3 SINE B2 -2 214 1 4 967 219 88 0 0 chr11 50158758 50158792 -71685064 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 967 1482 73 16 0 chr11 50158836 50159027 -71684829 + B2_Mm2 SINE B2 2 195 0 4 967 567 237 0 30 chr11 50159245 50159380 -71684476 - B1_Mur2 SINE Alu -18 131 1 4 967 255 269 39 0 chr11 50159404 50159482 -71684374 - ID4 SINE ID -1 82 2 4 967 949 93 62 0 chr11 50159656 50159785 -71684071 - B1_Mus2 SINE Alu -10 137 1 4 967 1036 249 21 14 chr11 50159843 50160128 -71683728 - B4A SINE B4 -1 291 5 4 967 455 250 40 0 chr11 50160160 50160284 -71683572 - MTEb LTR MaLR -243 136 8 4 967 819 114 92 0 chr11 50160372 50160503 -71683353 - B1_Mur2 SINE Alu -6 143 1 4 967 22 0 0 0 chr11 50160582 50160604 -71683252 + AT_rich Low_complexity Low_complexity 1 22 0 4 967 1105 68 0 52 chr11 50160615 50160769 -71683087 + B1_Mm SINE Alu 2 147 0 4 967 372 251 178 5 chr11 50160780 50160988 -71682868 + L1ME1 LINE L1 4992 5235 -911 4 967 1216 68 0 0 chr11 50161459 50161607 -71682249 - B1_Mus1 SINE Alu 0 148 1 4 967 632 181 84 28 chr11 50162341 50162483 -71681373 + B1_Mur4 SINE Alu 1 150 0 4 967 231 283 0 0 chr11 50162521 50162581 -71681275 + ID_B1 SINE B4 159 218 -6 4 967 1222 107 0 11 chr11 50162585 50162764 -71681092 + B2_Mm2 SINE B2 1 177 -18 4 967 3424 28 5 0 chr11 50162770 50163164 -71680692 + MTA_Mm LTR MaLR 1 396 0 4 967 9265 33 6 1 chr11 50163165 50164257 -71679599 + MTA_Mm-int LTR MaLR 2 1098 0 4 967 3043 28 5 0 chr11 50164257 50164646 -71679210 + MTA_Mm LTR MaLR 1 391 -5 4 967 261 83 0 0 chr11 50164646 50164682 -71679174 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 4 967 374 310 8 57 chr11 50164718 50164841 -71679015 + PB1D10 SINE Alu 1 117 0 4 967 1242 34 0 13 chr11 50164855 50165004 -71678852 + B1_Mus1 SINE Alu 1 147 -1 4 967 363 259 103 20 chr11 50165324 50165470 -71678386 + L1ME1 LINE L1 5706 5863 -316 4 967 228 161 107 0 chr11 50165661 50165717 -71678139 + L1MA10 LINE L1 6264 6325 -9 4 967 408 145 84 0 chr11 50165975 50166058 -71677798 - MTD LTR MaLR -134 285 196 4 967 382 102 0 13 chr11 50166051 50166162 -71677694 - B2_Mm2 SINE B2 0 195 50 4 967 553 135 6 50 chr11 50166180 50166321 -71677535 - B1_Mm SINE Alu -20 127 3 4 967 387 255 65 138 chr11 50166351 50166388 -71677468 - MTD LTR MaLR -167 229 193 4 967 973 86 185 0 chr11 50166388 50166539 -71677317 - B2_Mm1t SINE B2 -13 180 2 4 967 774 200 67 62 chr11 50166539 50166635 -71677221 - MTD LTR MaLR -209 210 114 4 967 1554 53 5 0 chr11 50166635 50166823 -71677033 + B2_Mm1t SINE B2 1 189 -4 4 967 774 200 67 62 chr11 50166823 50166934 -71676922 - MTD LTR MaLR -306 113 2 4 967 689 272 11 23 chr11 50166934 50167111 -71676745 - B3A SINE B2 -22 176 2 4 967 180 0 0 0 chr11 50167226 50167246 -71676610 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 967 1331 77 11 6 chr11 50167246 50167428 -71676428 - B2_Mm2 SINE B2 -12 183 1 4 967 226 275 224 30 chr11 50167436 50167601 -71676255 + LTR16A1 LTR ERVL 245 441 -15 4 967 630 242 46 52 chr11 50167676 50167850 -71676006 + B3A SINE B2 10 182 -16 5 967 533 224 52 15 chr11 50168065 50168201 -71675655 - B1F SINE Alu -7 142 2 5 967 240 191 64 0 chr11 50168449 50168496 -71675360 - RMER15 LTR ERVL -123 452 403 5 967 4444 128 86 82 chr11 50168711 50169567 -71674289 + RMER19B LTR ERVK 6 866 -36 5 967 1270 101 45 0 chr11 50169567 50169746 -71674110 + B2_Mm2 SINE B2 2 188 -7 5 967 4444 128 86 82 chr11 50169746 50169770 -71674086 + RMER19B LTR ERVK 867 890 -12 5 967 386 234 18 53 chr11 50169978 50170091 -71673765 + PB1 SINE Alu 12 120 -7 5 967 363 341 0 30 chr11 50170109 50170242 -71673614 + B4A SINE B4 10 138 -154 5 967 440 248 38 9 chr11 50170454 50170560 -71673296 + B4A SINE B4 122 230 -62 5 967 743 169 31 0 chr11 50170563 50170693 -71673163 + B1_Mur3 SINE Alu 3 136 -13 5 967 432 110 181 12 chr11 50170880 50170963 -71672893 - B1_Mus2 SINE Alu 0 147 51 5 967 227 257 0 86 chr11 50170925 50171006 -71672850 - 4.5SRNA scRNA scRNA -10 84 11 5 967 206 324 139 7 chr11 50171731 50171868 -71671988 + L2b LINE L2 3198 3352 -23 5 967 1205 61 0 20 chr11 50172230 50172380 -71671476 - B1_Mus1 SINE Alu 0 148 2 5 967 453 271 47 83 chr11 50173445 50173509 -71670347 + ID_B1 SINE B4 39 224 0 5 967 716 132 78 0 chr11 50173509 50173638 -71670218 + B1_Mur3 SINE Alu 11 149 0 5 967 329 310 0 0 chr11 50173715 50173786 -71670070 + ID4 SINE ID 8 78 -5 5 967 578 209 34 34 chr11 50174254 50174373 -71669483 + B1F SINE Alu 22 140 -9 5 967 297 0 0 0 chr11 50174374 50174407 -71669449 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 967 378 204 125 58 chr11 50174482 50174602 -71669254 - B3 SINE B2 -1 215 88 5 967 1847 156 111 64 chr11 50174602 50174785 -71669071 - RLTR20A LTR ERVK 0 541 347 5 967 1316 108 11 0 chr11 50174785 50174971 -71668885 - B2_Mm1t SINE B2 -5 188 1 5 967 1847 156 111 64 chr11 50174971 50175191 -71668665 - RLTR20A LTR ERVK -195 346 119 5 967 1116 94 0 0 chr11 50175201 50175360 -71668496 + (TTCTCC)n Simple_repeat Simple_repeat 5 163 0 5 967 878 199 0 42 chr11 50175391 50175559 -71668297 + RLTR40 LTR ERVK 647 807 -10 5 967 757 147 0 8 chr11 50176047 50176164 -71667692 - RLTR20A LTR ERVK -425 116 1 5 967 427 194 21 0 chr11 50176164 50176246 -71667610 - B3A SINE B2 -123 93 2 5 967 1192 62 0 0 chr11 50176284 50176429 -71667427 - B1_Mus2 SINE Alu -2 145 1 5 967 684 215 74 47 chr11 50176543 50176715 -71667141 - B3 SINE B2 -6 210 20 5 967 471 209 16 91 chr11 50176716 50176837 -71667019 - PB1D7 SINE Alu 0 120 9 5 967 568 284 11 21 chr11 50176766 50176927 -71666929 - ID_B1 SINE B4 -126 166 2 5 967 3596 107 20 57 chr11 50177179 50177776 -71666080 + RMER15 LTR ERVL 1 575 0 5 967 767 167 80 0 chr11 50177963 50178101 -71665755 + B1_Mur4 SINE Alu 1 149 -1 5 967 644 240 127 32 chr11 50178155 50178344 -71665512 + B3 SINE B2 7 213 -3 5 967 744 243 113 22 chr11 50178356 50178541 -71665315 - B4 SINE B4 -85 207 6 5 967 858 159 34 28 chr11 50178754 50178937 -71664919 - B2_Mm2 SINE B2 -14 202 1 5 967 867 219 25 0 chr11 50178987 50179147 -71664709 - B3 SINE B2 -51 165 2 5 967 204 97 0 0 chr11 50179150 50179181 -71664675 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 5 967 773 194 0 28 chr11 50179181 50179324 -71664532 - B1_Mur3 SINE Alu -10 139 1 5 967 256 243 68 54 chr11 50179481 50179555 -71664301 + MTE2b LTR MaLR 237 311 -68 5 967 532 296 61 12 chr11 50179675 50179839 -71664017 + ID_B1 SINE B4 51 222 -2 5 967 813 296 9 5 chr11 50179881 50180095 -71663761 + ID_B1 SINE B4 1 215 -9 5 967 3696 202 26 37 chr11 50180327 50180599 -71663257 + RMER1C Other Other 92 244 -1098 5 967 384 22 0 0 chr11 50180599 50180644 -71663212 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 967 3696 231 54 99 chr11 50180644 50181680 -71662176 + RMER1C Other Other 245 1213 -129 5 967 194 0 39 0 chr11 50181680 50181706 -71662150 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 967 3696 231 54 99 chr11 50181706 50181819 -71662037 + RMER1C Other Other 1214 1333 -9 5 967 325 169 0 17 chr11 50181993 50182053 -71661803 - ORR1D2 LTR MaLR -2 368 310 5 967 492 278 126 0 chr11 50182102 50182253 -71661603 + B3A SINE B2 7 176 -22 5 967 422 205 71 9 chr11 50182261 50182357 -71661499 - ORR1D2 LTR MaLR -43 327 225 5 967 694 277 18 29 chr11 50182357 50182576 -71661280 + B3 SINE B2 3 216 0 5 967 537 212 247 27 chr11 50182591 50182741 -71661115 - ORR1D2 LTR MaLR -187 183 1 5 967 405 139 139 115 chr11 50182846 50182968 -71660888 + ORR1D1 LTR MaLR 5 129 -245 5 967 468 0 0 0 chr11 50182973 50183025 -71660831 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 967 330 190 128 23 chr11 50183030 50183116 -71660740 + ORR1D1 LTR MaLR 221 315 -69 5 967 376 271 122 27 chr11 50183545 50183693 -71660163 + RSINE1 SINE B4 3 164 -1 5 967 1164 55 0 27 chr11 50183737 50183886 -71659970 + B1_Mus2 SINE Alu 3 147 0 5 967 490 198 19 29 chr11 50183937 50184041 -71659815 + PB1D9 SINE Alu 18 120 0 5 967 985 156 129 0 chr11 50184047 50184233 -71659623 + B3 SINE B2 2 211 -5 5 967 865 54 0 0 chr11 50184258 50184370 -71659486 + B1_Mus2 SINE Alu 30 141 -6 5 967 333 0 0 0 chr11 50184372 50184409 -71659447 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 5 967 249 270 95 0 chr11 50185285 50185359 -71658497 - ID4 SINE ID -2 81 1 5 967 261 0 0 0 chr11 50185413 50185442 -71658414 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 5 967 592 226 158 14 chr11 50185444 50185616 -71658240 - B3 SINE B2 0 193 1 5 967 466 205 48 57 chr11 50185628 50185752 -71658104 - B1F2 SINE Alu -1 148 26 5 967 230 245 0 58 chr11 50185982 50186034 -71657822 + B1_Mus2 SINE Alu 2 50 -97 5 967 636 219 19 64 chr11 50186120 50186276 -71657580 - B1_Mur3 SINE Alu 0 149 1 5 967 229 228 41 172 chr11 50186168 50186290 -71657566 - MT2B LTR ERVL -344 257 152 5 967 390 294 78 0 chr11 50186334 50186436 -71657420 - B3A SINE B2 -88 110 1 5 967 399 305 27 60 chr11 50186467 50186642 -71657214 + B1F SINE Alu 1 141 -6 5 967 516 211 218 8 chr11 50186721 50186845 -71657011 - B1_Mur4 SINE Alu 0 150 1 5 967 305 318 31 23 chr11 50187053 50187074 -71656782 - ID_B1 SINE B4 -5 219 90 5 967 470 269 46 0 chr11 50187074 50187182 -71656674 - B1_Mur1 SINE Alu -28 121 9 5 967 316 281 0 68 chr11 50187194 50187282 -71656574 - ID_B1 SINE B4 -32 192 111 5 967 477 178 262 0 chr11 50187317 50187424 -71656432 + B1_Mus2 SINE Alu 3 137 -10 5 967 189 0 0 0 chr11 50187424 50187445 -71656411 + (T)n Simple_repeat Simple_repeat 1 21 0 5 967 994 101 58 0 chr11 50187445 50187584 -71656272 - B1_Mus2 SINE Alu 0 147 1 5 967 22 35 0 0 chr11 50187584 50187613 -71656243 + AT_rich Low_complexity Low_complexity 1 29 0 5 967 1226 110 60 0 chr11 50187616 50187798 -71656058 - B2_Mm2 SINE B2 -2 193 1 5 967 241 343 0 15 chr11 50188134 50188202 -71655654 + B4 SINE B4 1 67 -225 5 967 345 218 195 31 chr11 50188319 50188447 -71655409 + B1F SINE Alu 1 149 0 5 967 606 184 0 0 chr11 50188488 50188591 -71655265 + B1_Mur1 SINE Alu 47 149 0 5 967 717 137 0 0 chr11 50188591 50188708 -71655148 + (GA)n Simple_repeat Simple_repeat 2 118 0 5 967 287 286 116 23 chr11 50189079 50189208 -71654648 + B1F1 SINE Alu 7 147 -2 5 967 327 308 26 0 chr11 50189378 50189456 -71654400 - AluG_3 SINE Alu -90 221 142 5 967 346 239 45 0 chr11 50189738 50189826 -71654030 - B1F SINE Alu -5 144 53 5 967 204 135 0 0 chr11 50191963 50192000 -71651856 + (CCGGG)n Simple_repeat Simple_repeat 4 40 0 5 967 1128 49 28 0 chr11 50192629 50192773 -71651083 - B1_Mus1 SINE Alu 0 148 1 5 968 232 92 364 15 chr11 50200597 50200663 -71643193 + B1_Mus2 SINE Alu 45 133 -14 5 968 235 169 11 211 chr11 50200782 50200802 -71643054 + MT2B LTR ERVL 152 222 -378 5 968 331 172 0 72 chr11 50200802 50200871 -71642985 + PB1D9 SINE Alu 2 65 -55 5 968 429 173 110 12 chr11 50201783 50201865 -71641991 + RSINE1 SINE B4 4 93 -72 5 968 220 301 87 10 chr11 50201865 50201887 -71641969 + B2_Mm1t SINE B2 3 114 -79 5 968 579 271 38 0 chr11 50202151 50202284 -71641572 + ID_B1 SINE B4 87 224 0 5 968 264 152 0 0 chr11 50202298 50202364 -71641492 + T-rich Low_complexity Low_complexity 1 66 0 5 968 943 67 0 0 chr11 50202364 50202483 -71641373 - B1_Mus1 SINE Alu 0 148 30 5 968 854 168 28 7 chr11 50204105 50204249 -71639607 - B1_Mur4 SINE Alu -3 147 1 5 968 1471 64 32 0 chr11 50204255 50204442 -71639414 - B2_Mm1t SINE B2 0 193 1 5 968 507 204 82 22 chr11 50205350 50205485 -71638371 - B1F2 SINE Alu -6 143 1 5 968 304 265 15 0 chr11 50206231 50206299 -71637557 - 4.5SRNA scRNA scRNA -25 69 1 5 968 183 80 0 0 chr11 50206387 50206412 -71637444 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 5 968 372 219 110 0 chr11 50206413 50206495 -71637361 - B1_Mur1 SINE Alu -1 148 58 5 968 693 179 0 4 chr11 50206534 50206648 -71637208 - B1_Mur2 SINE Alu -9 111 2 5 968 231 267 10 19 chr11 50206561 50206664 -71637192 - ORR1B1-int LTR MaLR -776 733 632 5 968 337 228 63 0 chr11 50207459 50207538 -71636318 + PB1D10 SINE Alu 14 97 -20 5 968 855 258 31 16 chr11 50207626 50207819 -71636037 + B3A SINE B2 1 196 -2 5 968 1040 91 7 0 chr11 50207846 50207989 -71635867 + B2_Mm2 SINE B2 1 144 -51 5 968 411 83 0 5 chr11 50208013 50208078 -71635778 + B2_Mm2 SINE B2 47 109 -107 5 968 27 0 0 0 chr11 50208084 50208111 -71635745 + AT_rich Low_complexity Low_complexity 1 27 0 5 968 245 236 101 14 chr11 50208656 50208685 -71635171 + PB1D7 SINE Alu 50 127 -22 5 968 261 208 42 0 chr11 50208685 50208733 -71635123 + ID_B1 SINE B4 169 218 -6 6 968 1158 52 0 0 chr11 50208789 50208925 -71634931 + B1_Mus2 SINE Alu 2 137 -10 6 968 361 218 21 65 chr11 50208973 50209066 -71634790 + ID_B1 SINE B4 131 219 -5 6 968 569 296 6 24 chr11 50209149 50209315 -71634541 - RSINE1 SINE B4 0 165 3 6 968 716 158 83 38 chr11 50209320 50209331 -71634525 - B1_Mm SINE Alu -1 146 139 6 968 1105 47 14 0 chr11 50209331 50209479 -71634377 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 6 968 716 158 83 38 chr11 50209479 50209599 -71634257 - B1_Mm SINE Alu -9 138 9 6 968 1444 60 0 21 chr11 50209621 50209781 -71634075 + B2_Mm1t SINE B2 1 160 -33 6 968 222 37 0 0 chr11 50209781 50209808 -71634048 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 968 1444 60 0 21 chr11 50209808 50209834 -71634022 + B2_Mm1t SINE B2 161 183 -10 6 968 514 348 59 0 chr11 50209867 50210002 -71633854 + RSINE1 SINE B4 21 163 -2 6 968 530 236 0 0 chr11 50210156 50210262 -71633594 + B1_Mur1 SINE Alu 43 148 -1 6 968 399 264 61 48 chr11 50212117 50212264 -71631592 - B1F1 SINE Alu 0 149 1 6 968 368 253 83 79 chr11 50212350 50212590 -71631266 - B4 SINE B4 -51 241 1 6 968 318 295 163 14 chr11 50212595 50212736 -71631120 - L1MD LINE L1 -825 5321 5160 6 968 2054 115 54 6 chr11 50212758 50213072 -71630784 - ORR1A4 LTR MaLR 0 329 1 6 968 787 108 58 0 chr11 50213094 50213214 -71630642 - B1_Mus2 SINE Alu 0 147 21 6 968 436 220 23 113 chr11 50213114 50213247 -71630609 - MT2B LTR ERVL -323 278 158 6 968 1710 150 27 183 chr11 50213270 50213651 -71630205 + ORR1C1 LTR MaLR 1 330 -48 6 968 1181 75 0 0 chr11 50213651 50213798 -71630058 + B1_Mus1 SINE Alu 2 148 0 6 968 1710 150 27 183 chr11 50213798 50213813 -71630043 + ORR1C1 LTR MaLR 331 331 -47 6 968 1354 51 85 0 chr11 50213813 50213990 -71629866 + B2_Mm2 SINE B2 3 194 -1 6 968 1710 150 27 183 chr11 50213990 50214040 -71629816 + ORR1C1 LTR MaLR 331 378 0 6 968 342 336 81 5 chr11 50214059 50214268 -71629588 - L1MD LINE L1 -1096 5050 4826 6 968 1066 128 5 31 chr11 50214280 50214473 -71629383 - B2_Mm2 SINE B2 -6 189 2 6 968 23 0 0 0 chr11 50214484 50214507 -71629349 + AT_rich Low_complexity Low_complexity 1 23 0 6 968 186 43 0 0 chr11 50214507 50214530 -71629326 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 968 636 209 101 0 chr11 50214531 50214660 -71629196 - B3A SINE B2 -49 149 8 6 968 241 265 76 67 chr11 50215777 50215882 -71627974 - MER21B LTR ERV1 -124 739 634 6 968 461 321 73 18 chr11 50216038 50216257 -71627599 + MLT1J-int LTR MaLR 102 332 -1055 6 968 282 236 0 40 chr11 50216312 50216332 -71627524 + B4 SINE B4 70 86 -206 6 968 446 146 260 0 chr11 50216332 50216428 -71627428 + B1F2 SINE Alu 2 122 -27 6 968 324 0 0 0 chr11 50216430 50216466 -71627390 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 6 968 301 250 131 108 chr11 50217575 50217705 -71626151 + B3A SINE B2 66 198 0 6 968 542 226 35 0 chr11 50217744 50217859 -71625997 + B1_Mur2 SINE Alu 28 146 -3 6 968 279 341 8 8 chr11 50218186 50218277 -71625579 + CT-rich Low_complexity Low_complexity 34 125 0 6 968 429 218 69 10 chr11 50218277 50218379 -71625477 - PB1D10 SINE Alu -9 108 1 6 968 279 341 8 8 chr11 50218379 50218396 -71625460 + polypyrimidine Low_complexity Low_complexity 17 33 0 6 968 1315 111 11 0 chr11 50218396 50218586 -71625270 - B2_Mm1t SINE B2 0 193 2 6 968 279 341 8 8 chr11 50218586 50218600 -71625256 + polypyrimidine Low_complexity Low_complexity 3 16 0 6 968 295 209 25 38 chr11 50218644 50218723 -71625133 + RLTR12B LTR ERVK 9 86 -442 6 968 337 225 32 121 chr11 50218739 50218951 -71624905 + RLTR15 LTR ERVK 48 268 -91 6 968 601 118 0 68 chr11 50218931 50218969 -71624887 + B1_Mus1 SINE Alu 39 70 -78 6 968 1434 51 0 6 chr11 50218969 50219147 -71624709 + B2_Mm2 SINE B2 1 177 -18 6 968 601 118 0 68 chr11 50219147 50219226 -71624630 + B1_Mus1 SINE Alu 71 148 0 6 968 355 222 95 53 chr11 50220164 50220259 -71623597 - PB1D10 SINE Alu -24 125 27 6 968 241 338 38 0 chr11 50221027 50221107 -71622749 + MER2B DNA MER2_type 182 264 -72 6 968 888 37 0 0 chr11 50221182 50221290 -71622566 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 968 472 244 40 39 chr11 50221913 50222054 -71621802 - PB1D9 SINE Alu -12 137 2 6 968 521 296 78 43 chr11 50222088 50222346 -71621510 - B4A SINE B4 -2 290 24 6 968 235 216 40 13 chr11 50222360 50222435 -71621421 - B4A SINE B4 -214 78 2 6 968 252 313 12 0 chr11 50223808 50223891 -71619965 - BC1_Mm scRNA scRNA -53 99 16 6 968 470 215 35 39 chr11 50223899 50224025 -71619831 - B1F SINE Alu -22 127 5 6 968 732 168 29 0 chr11 50224305 50224442 -71619414 + B1_Mur2 SINE Alu 1 141 -8 6 968 428 268 25 153 chr11 50224642 50224751 -71619105 - RSINE1 SINE B4 -18 147 58 6 968 697 203 14 48 chr11 50224751 50224896 -71618960 - B1_Mur1 SINE Alu -8 141 2 6 968 428 268 25 153 chr11 50224896 50224949 -71618907 - RSINE1 SINE B4 -108 57 6 6 968 207 0 0 0 chr11 50224950 50224973 -71618883 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 968 775 220 85 16 chr11 50225035 50225224 -71618632 - B3 SINE B2 -14 202 1 6 968 614 330 46 46 chr11 50225229 50225381 -71618475 - B4A SINE B4 -67 225 77 6 968 1237 41 0 7 chr11 50225381 50225527 -71618329 - B1_Mus2 SINE Alu -1 146 2 6 968 614 330 46 46 chr11 50225527 50225593 -71618263 - B4A SINE B4 -216 76 7 6 968 958 201 53 14 chr11 50225616 50225823 -71618033 - B3 SINE B2 0 216 2 6 968 27 29 0 0 chr11 50225877 50225911 -71617945 + AT_rich Low_complexity Low_complexity 1 34 0 6 968 721 169 41 27 chr11 50225912 50226058 -71617798 - B1_Mur3 SINE Alu 0 149 2 6 968 1224 54 0 0 chr11 50226084 50226231 -71617625 - B1_Mus2 SINE Alu 0 147 1 6 968 737 176 230 0 chr11 50226241 50226406 -71617450 - B3 SINE B2 -11 205 3 6 968 1158 88 0 0 chr11 50226625 50226772 -71617084 - B1_Mus2 SINE Alu 0 147 1 6 968 486 0 0 0 chr11 50226852 50226906 -71616950 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 968 445 213 0 78 chr11 50227000 50227102 -71616754 + PB1D9 SINE Alu 12 105 -15 6 968 1338 95 26 5 chr11 50227102 50227293 -71616563 - B2_Mm2 SINE B2 0 195 1 6 968 297 0 0 0 chr11 50227335 50227368 -71616488 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 968 478 261 89 7 chr11 50227371 50227506 -71616350 - B3A SINE B2 -49 149 4 6 968 953 136 174 20 chr11 50227507 50227702 -71616154 + URR1B DNA MER1_type 1 225 0 6 968 482 246 202 12 chr11 50228489 50228662 -71615194 - B3 SINE B2 -9 207 2 6 968 501 32 0 0 chr11 50228678 50228741 -71615115 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 968 279 0 0 0 chr11 50229233 50229264 -71614592 + (A)n Simple_repeat Simple_repeat 1 31 0 6 968 641 289 12 30 chr11 50229279 50229443 -71614413 + RSINE1 SINE B4 2 162 -3 6 968 369 0 0 0 chr11 50229448 50229489 -71614367 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 968 225 94 0 0 chr11 50229979 50230011 -71613845 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 6 968 970 167 181 0 chr11 50230092 50230307 -71613549 + MTD LTR MaLR 3 256 -163 6 968 2033 137 10 0 chr11 50230307 50230621 -71613235 + Lx9 LINE L1 6738 7054 -590 6 968 21 36 0 0 chr11 50231279 50231307 -71612549 + AT_rich Low_complexity Low_complexity 1 28 0 6 968 318 231 88 25 chr11 50231356 50231436 -71612420 - B4 SINE B4 -201 91 7 6 968 335 285 62 78 chr11 50231556 50231735 -71612121 + B4 SINE B4 3 178 -114 6 968 572 186 0 0 chr11 50231650 50231747 -71612109 + B1F2 SINE Alu 5 101 -48 6 968 1151 75 0 13 chr11 50232389 50232538 -71611318 + B1_Mus1 SINE Alu 1 147 -1 6 968 267 103 0 0 chr11 50232549 50232588 -71611268 + (A)n Simple_repeat Simple_repeat 1 39 0 6 968 368 167 0 0 chr11 50233559 50233619 -71610237 - B3A SINE B2 -111 87 28 6 968 316 303 20 14 chr11 50233676 50233789 -71610067 - MIR SINE MIR -116 152 43 6 968 269 241 119 111 chr11 50234813 50234939 -71608917 + MER33 DNA MER1_type 2 128 -196 6 968 186 324 42 14 chr11 50235002 50235074 -71608782 + L2a LINE L2 3314 3387 -39 6 968 504 285 80 48 chr11 50236035 50236223 -71607633 + B3A SINE B2 5 198 0 6 968 656 149 0 26 chr11 50236467 50236584 -71607272 - BC1_Mm scRNA scRNA -37 115 2 6 968 330 234 77 139 chr11 50236700 50237150 -71606706 - RMER10A LTR ERVL -18 424 25 6 968 1135 68 0 57 chr11 50237154 50237311 -71606545 - B1_Mus1 SINE Alu 0 148 1 6 968 979 107 7 0 chr11 50237339 50237479 -71606377 - B1_Mur4 SINE Alu 0 150 10 6 968 530 286 0 31 chr11 50237479 50237498 -71606358 - ID_B1 SINE B4 0 224 71 6 968 375 269 104 39 chr11 50237593 50237775 -71606081 + Charlie2a DNA MER1_type 1658 1851 -1010 6 968 207 100 0 0 chr11 50237783 50237813 -71606043 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 6 968 1192 200 0 14 chr11 50237841 50238059 -71605797 - B3 SINE B2 0 216 2 6 968 680 234 48 0 chr11 50238100 50238245 -71605611 + RSINE1 SINE B4 12 163 -2 6 968 708 229 12 78 chr11 50238282 50238448 -71605408 - ID_B1 SINE B4 -66 158 4 6 968 446 241 179 0 chr11 50238712 50238824 -71605032 + ID_B1 SINE B4 86 217 -7 6 968 301 247 32 43 chr11 50238916 50239009 -71604847 - PB1 SINE Alu -15 112 21 6 968 216 167 0 0 chr11 50239314 50239362 -71604494 + CT-rich Low_complexity Low_complexity 1 48 0 6 968 319 268 59 59 chr11 50239658 50239752 -71604104 - MER45C DNA Tip100 -732 221 128 6 968 308 219 218 88 chr11 50239752 50239922 -71603934 + B3A SINE B2 2 193 -5 7 968 462 261 36 9 chr11 50239970 50240082 -71603774 - PB1D7 SINE Alu 0 120 6 7 968 891 172 0 14 chr11 50240760 50240907 -71602949 + B1_Mur3 SINE Alu 5 149 0 7 968 720 309 0 0 chr11 50241483 50241632 -71602224 - RSINE1 SINE B4 -12 153 5 7 968 785 272 42 25 chr11 50241633 50241969 -71601887 - L1MA5 LINE L1 -3 6297 5955 7 968 485 250 106 0 chr11 50242128 50242260 -71601596 + RSINE1 SINE B4 1 146 -19 7 968 835 271 57 48 chr11 50242291 50242402 -71601454 + B4A SINE B4 43 153 -139 7 968 1830 144 47 42 chr11 50242402 50242807 -71601049 - RMER17C LTR ERVK -3 407 1 7 968 835 271 57 48 chr11 50242807 50242943 -71600913 + B4A SINE B4 154 292 0 7 968 951 132 21 0 chr11 50243001 50243145 -71600711 + B1_Mus1 SINE Alu 2 148 0 7 968 475 235 0 25 chr11 50243420 50243542 -71600314 - PB1D9 SINE Alu -1 119 1 7 968 21 104 0 0 chr11 50244258 50244335 -71599521 + GC_rich Low_complexity Low_complexity 1 77 0 7 968 684 170 59 7 chr11 50244957 50245093 -71598763 + B1_Mur4 SINE Alu 1 143 -7 7 968 204 40 0 0 chr11 50245172 50245197 -71598659 + (CG)n Simple_repeat Simple_repeat 2 26 0 7 968 285 257 0 0 chr11 50245200 50245270 -71598586 - tRNA-Ala-GCY_ tRNA tRNA -3 72 3 7 968 271 116 0 23 chr11 50245295 50245339 -71598517 - ID_B1 SINE B4 -68 156 114 7 968 493 264 48 0 chr11 50245400 50245525 -71598331 - B1F2 SINE Alu -13 136 6 7 968 932 176 0 0 chr11 50246024 50246166 -71597690 + B1_Mur1 SINE Alu 2 143 -6 7 968 330 254 0 0 chr11 50246326 50246393 -71597463 + U6 snRNA snRNA 1 67 -40 7 968 216 0 0 0 chr11 50248015 50248039 -71595817 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 968 582 175 140 0 chr11 50248039 50248153 -71595703 - B1_Mur4 SINE Alu -12 138 9 7 968 843 200 47 33 chr11 50248161 50248373 -71595483 - B3 SINE B2 0 216 2 7 968 1362 89 21 5 chr11 50248383 50248574 -71595282 - B2_Mm2 SINE B2 0 195 2 7 968 779 257 36 20 chr11 50248662 50248675 -71595181 - B3 SINE B2 -17 199 187 7 968 715 152 144 0 chr11 50248675 50248793 -71595063 + B1_Mus2 SINE Alu 1 135 -12 7 968 779 257 36 20 chr11 50248793 50248808 -71595048 - B3 SINE B2 -30 186 174 7 968 945 39 23 0 chr11 50248808 50248938 -71594918 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 7 968 849 203 39 1 chr11 50248938 50249103 -71594753 - B3A SINE B2 -43 173 2 7 968 2334 189 40 22 chr11 50249774 50250271 -71593585 + RLTR28 LTR ERVL 5 510 -14 7 968 499 262 25 0 chr11 50250282 50250404 -71593452 + ID_B1 SINE B4 100 224 0 7 968 3190 71 2 0 chr11 50250437 50250832 -71593024 + MTA_Mm LTR MaLR 1 396 0 7 968 1923 166 33 3 chr11 50251396 50251764 -71592092 - Lx9 LINE L1 -8 7636 7258 7 968 207 0 0 0 chr11 50251882 50251905 -71591951 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 7 968 259 222 0 100 chr11 50251915 50251975 -71591881 - B3 SINE B2 -162 54 1 7 968 1088 153 37 60 chr11 50252174 50252390 -71591466 + B3 SINE B2 4 214 -2 7 968 683 298 36 61 chr11 50252427 50252674 -71591182 + B4A SINE B4 40 280 -12 7 968 306 0 0 0 chr11 50252744 50252778 -71591078 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 968 1113 269 6 103 chr11 50252962 50253310 -71590546 - MTE2a LTR MaLR -52 327 14 7 968 728 209 51 17 chr11 50253550 50253725 -71590131 + B3A SINE B2 1 181 -17 7 968 479 188 129 0 chr11 50253954 50254055 -71589801 - B1F SINE Alu -35 114 1 7 968 21 36 0 0 chr11 50254055 50254083 -71589773 + AT_rich Low_complexity Low_complexity 1 28 0 7 968 575 252 7 14 chr11 50254094 50254226 -71589630 - B3 SINE B2 -5 211 80 7 968 836 271 17 60 chr11 50254226 50254524 -71589332 + B4A SINE B4 2 286 -6 7 968 252 0 0 0 chr11 50254575 50254603 -71589253 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 968 204 111 0 0 chr11 50254628 50254664 -71589192 + (CAGAGA)n Simple_repeat Simple_repeat 3 38 0 7 968 222 303 90 0 chr11 50254685 50254774 -71589082 - L2 LINE L2 -954 2465 2369 7 968 1259 128 5 0 chr11 50254785 50254973 -71588883 + URR1B DNA MER1_type 36 224 -1 7 968 322 322 161 65 chr11 50255066 50255131 -71588725 - MLT1J2 LTR MaLR -6 442 386 7 968 502 184 117 0 chr11 50255131 50255234 -71588622 - PB1D10 SINE Alu -1 116 2 7 968 322 322 161 65 chr11 50255234 50255553 -71588303 - MLT1J2 LTR MaLR -63 385 22 7 968 249 239 38 0 chr11 50255684 50255763 -71588093 + B1F SINE Alu 23 101 -16 7 968 201 274 0 76 chr11 50255891 50255970 -71587886 - L2 LINE L2 -1455 1964 1892 7 968 307 284 14 0 chr11 50256282 50256356 -71587500 - ID4_ SINE ID -6 77 3 7 968 226 227 20 49 chr11 50256799 50256901 -71586955 + (CATA)n Simple_repeat Simple_repeat 2 100 0 7 968 638 232 70 88 chr11 50257421 50257648 -71586208 + Charlie1b DNA MER1_type 74 296 -227 7 968 613 252 17 0 chr11 50257649 50257783 -71586073 - B1_Mur1 SINE Alu 0 149 3 7 968 785 250 10 63 chr11 50257879 50258084 -71585772 + B3A SINE B2 1 194 -4 7 968 26 0 0 0 chr11 50258084 50258110 -71585746 + AT_rich Low_complexity Low_complexity 1 26 0 7 968 371 213 0 138 chr11 50258110 50258219 -71585637 - B3A SINE B2 -2 196 103 7 968 508 198 119 20 chr11 50258261 50258456 -71585400 - L1MA8 LINE L1 -18 6294 6081 7 968 2229 118 15 6 chr11 50258687 50259021 -71584835 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 968 8229 39 9 8 chr11 50259023 50260018 -71583838 + RLTR10-int LTR ERVK 3 998 -989 7 968 380 258 39 15 chr11 50260082 50260212 -71583644 + RLTR10-int LTR ERVK 1462 1594 -5987 7 968 8865 26 0 3 chr11 50260294 50261294 -71582562 + RLTR10-int LTR ERVK 990 1986 -1 7 968 2312 44 2 293 chr11 50261294 50261840 -71582016 + RLTR10 LTR ERVK 1 387 -3 7 968 645 14 0 0 chr11 50261932 50262006 -71581850 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 968 972 237 0 10 chr11 50262152 50262352 -71581504 - B3 SINE B2 0 216 19 7 968 548 182 125 18 chr11 50262348 50262460 -71581396 - B1_Mur2 SINE Alu -1 148 25 7 968 269 197 114 38 chr11 50262399 50262478 -71581378 - MT2B LTR ERVL -361 240 156 7 968 1126 89 0 0 chr11 50262508 50262654 -71581202 - B1_Mus2 SINE Alu 0 147 2 7 968 315 0 0 0 chr11 50262665 50262700 -71581156 + (TTA)n Simple_repeat Simple_repeat 2 36 0 7 968 1366 78 6 0 chr11 50262700 50262879 -71580977 - B2_Mm1a SINE B2 -13 180 1 7 968 760 262 48 5 chr11 50262977 50263184 -71580672 - ID_B1 SINE B4 -2 222 7 7 968 24 32 0 0 chr11 50263186 50263217 -71580639 + AT_rich Low_complexity Low_complexity 1 31 0 7 968 305 189 0 101 chr11 50263554 50263643 -71580213 - L1M5 LINE L1 -569 5671 5595 7 968 240 264 81 72 chr11 50263825 50263961 -71579895 - MLT1H2 LTR MaLR -16 563 421 7 968 270 273 0 0 chr11 50264047 50264102 -71579754 - MLT1H2 LTR MaLR -325 164 110 7 968 292 292 82 36 chr11 50264307 50264417 -71579439 - MTEa LTR MaLR 0 379 265 7 968 226 288 40 14 chr11 50264550 50264624 -71579232 - MTEa LTR MaLR -286 84 9 7 968 415 291 275 5 chr11 50264630 50264837 -71579019 + Tigger5 DNA MER2_type 5 267 -2139 7 968 290 351 97 0 chr11 50264858 50264972 -71578884 - PB1 SINE Alu -2 125 1 7 968 207 0 0 0 chr11 50265137 50265160 -71578696 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 968 286 162 13 13 chr11 50265162 50265237 -71578619 + GA-rich Low_complexity Low_complexity 1 75 0 7 968 380 265 20 0 chr11 50265313 50265411 -71578445 - PB1D10 SINE Alu -13 104 5 7 968 1312 61 33 16 chr11 50265752 50265936 -71577920 - B2_Mm2 SINE B2 -2 193 7 7 968 579 255 44 98 chr11 50265941 50265963 -71577893 - B2_Mm2 SINE B2 0 195 180 7 968 435 38 0 0 chr11 50265963 50266016 -71577840 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 968 923 245 13 5 chr11 50266016 50266197 -71577659 - B3A SINE B2 -16 179 3 7 968 214 277 0 0 chr11 50266286 50266333 -71577523 - PB1D9 SINE Alu -73 47 1 7 968 561 266 35 35 chr11 50266342 50266486 -71577370 - B3A SINE B2 -2 196 53 7 968 645 293 16 16 chr11 50266622 50266806 -71577050 + B3 SINE B2 6 189 -27 7 968 423 391 22 58 chr11 50266822 50267183 -71576673 - HAL1 LINE L1 -961 1546 1199 7 968 635 252 15 0 chr11 50267303 50267434 -71576422 - B3A SINE B2 -2 196 64 7 968 402 248 79 0 chr11 50267519 50267620 -71576236 - PB1D10 SINE Alu -8 109 1 7 968 22 0 0 0 chr11 50267624 50267646 -71576210 + AT_rich Low_complexity Low_complexity 1 22 0 7 968 24 32 0 0 chr11 50269155 50269186 -71574670 + AT_rich Low_complexity Low_complexity 1 31 0 7 968 1069 195 23 18 chr11 50269186 50269405 -71574451 - ID_B1 SINE B4 -3 221 2 7 968 297 354 37 5 chr11 50269573 50269789 -71574067 - L1MC LINE L1 -2147 5735 5513 7 968 549 218 0 9 chr11 50269971 50270082 -71573774 - ID_B1 SINE B4 -3 221 112 7 968 300 284 116 24 chr11 50270266 50270401 -71573455 - B1_Mur2 SINE Alu -11 139 3 7 968 582 82 0 0 chr11 50270410 50270495 -71573361 + (GGA)n Simple_repeat Simple_repeat 2 86 0 7 968 288 0 0 0 chr11 50271545 50271577 -71572279 + (T)n Simple_repeat Simple_repeat 1 32 0 7 968 185 0 40 0 chr11 50271619 50271644 -71572212 + (TGG)n Simple_repeat Simple_repeat 2 27 0 7 968 630 244 123 12 chr11 50272451 50272613 -71571243 + ID_B1 SINE B4 7 186 -38 7 968 242 308 102 8 chr11 50272527 50272645 -71571211 + B1_Mus1 SINE Alu 8 136 -12 7 968 211 157 56 0 chr11 50273587 50273676 -71570180 + (TA)n Simple_repeat Simple_repeat 1 94 0 7 968 319 157 0 22 chr11 50273691 50273782 -71570074 + GA-rich Low_complexity Low_complexity 2 90 0 7 968 582 15 0 0 chr11 50273948 50274015 -71569841 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 7 968 530 175 117 109 chr11 50274015 50274143 -71569713 - B1_Mur1 SINE Alu -12 137 9 7 968 461 332 62 31 chr11 50274226 50274484 -71569372 + MLT1D LTR MaLR 1 266 -239 7 968 392 271 0 85 chr11 50274533 50274662 -71569194 + RMER1B Other Other 43 160 -906 7 968 547 289 127 52 chr11 50274846 50275242 -71568614 + RMER1C Other Other 183 749 -593 7 968 654 195 93 43 chr11 50275258 50275419 -71568437 + RMER1C Other Other 1070 1238 -104 7 968 279 292 179 42 chr11 50275425 50275632 -71568224 + MLT1D LTR MaLR 204 434 -71 8 968 1371 66 38 11 chr11 50275648 50275833 -71568023 + B2_Mm2 SINE B2 1 190 -5 8 968 378 57 0 0 chr11 50275843 50275896 -71567960 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 8 968 2275 89 35 3 chr11 50275983 50276300 -71567556 - ORR1A2 LTR MaLR 0 327 1 8 968 6109 98 5 2 chr11 50276300 50277144 -71566712 - ORR1A2-int LTR MaLR 0 1963 1118 8 968 4376 17 0 4 chr11 50277144 50277628 -71566228 - LTRIS_Mm LTR ERV1 0 482 1 8 968 36861 35 22 17 chr11 50277628 50282292 -71561564 - MuRRS-int LTR ERV1 0 4690 1 8 968 4407 15 0 4 chr11 50282292 50282776 -71561080 - LTRIS_Mm LTR ERV1 0 482 1 8 968 4272 160 40 126 chr11 50282777 50283816 -71560040 - ORR1A2-int LTR MaLR -842 950 1 8 968 2313 71 58 0 chr11 50283816 50284125 -71559731 - ORR1A2 LTR MaLR 0 327 1 8 968 621 223 7 21 chr11 50284208 50284350 -71559506 + L1MB3 LINE L1 4855 4994 -1152 8 968 589 168 127 22 chr11 50284352 50284486 -71559370 + B3A SINE B2 1 148 -50 8 968 2395 64 16 3 chr11 50284555 50284868 -71558988 - ORR1A2 LTR MaLR -8 319 3 8 968 23 0 0 0 chr11 50284936 50284959 -71558897 + AT_rich Low_complexity Low_complexity 1 23 0 8 968 249 200 136 34 chr11 50284996 50285084 -71558772 + L1MB3 LINE L1 5457 5553 -630 8 968 1190 270 94 33 chr11 50285174 50285406 -71558450 + L1MB3 LINE L1 5609 5842 -341 8 968 793 145 47 68 chr11 50285406 50285554 -71558302 - B1_Mur3 SINE Alu -2 147 3 8 968 1190 270 94 33 chr11 50285554 50285862 -71557994 + L1MB3 LINE L1 5843 6182 -1 8 968 881 266 99 33 chr11 50285901 50286325 -71557531 + L1M7 LINE L1 1133 1584 -4634 8 968 281 179 12 0 chr11 50286738 50286822 -71557034 + GA-rich Low_complexity Low_complexity 2 86 0 8 968 592 273 40 10 chr11 50286866 50287066 -71556790 + L1MA4 LINE L1 5737 5942 -358 8 968 303 196 0 0 chr11 50287230 50287281 -71556575 - B4A SINE B4 -162 130 80 8 968 325 309 89 99 chr11 50287491 50287805 -71556051 + ORR1C1 LTR MaLR 26 332 -42 8 968 2431 98 0 0 chr11 50287805 50288131 -71555725 + ORR1A2 LTR MaLR 2 327 0 8 968 862 297 60 21 chr11 50288174 50288556 -71555300 + L1MD LINE L1 5402 5798 -561 8 968 525 271 22 15 chr11 50288679 50288814 -71555042 - MLT1B LTR MaLR 0 390 255 8 968 529 259 21 117 chr11 50288842 50289030 -71554826 + B4 SINE B4 100 269 -23 8 968 261 0 0 0 chr11 50289074 50289103 -71554753 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 968 30 27 0 0 chr11 50289365 50289402 -71554454 + AT_rich Low_complexity Low_complexity 1 37 0 8 968 189 0 0 0 chr11 50289402 50289423 -71554433 + (ATTTG)n Simple_repeat Simple_repeat 4 24 0 8 968 435 317 164 50 chr11 50289686 50290088 -71553768 + MLT1H LTR MaLR 77 524 -25 8 968 732 276 6 0 chr11 50290136 50290292 -71553564 - RSINE1 SINE B4 -4 161 5 8 968 484 321 16 17 chr11 50290522 50290752 -71553104 + L1MC LINE L1 5551 5777 -347 8 968 250 344 82 2 chr11 50291084 50291254 -71552602 + L1MB8 LINE L1 5988 6169 -15 8 968 575 268 102 10 chr11 50291270 50291462 -71552394 + B4 SINE B4 1 210 -82 8 968 616 176 792 48 chr11 50291462 50291600 -71552256 - ORR1E LTR MaLR 0 379 144 8 968 767 11 11 0 chr11 50291600 50291692 -71552164 + (GA)n Simple_repeat Simple_repeat 2 94 0 8 968 734 246 26 4 chr11 50291692 50291851 -71552005 - ORR1E LTR MaLR -196 163 5 8 968 391 355 104 34 chr11 50291876 50292144 -71551712 + B4A SINE B4 1 287 -5 8 968 210 299 35 0 chr11 50292145 50292232 -71551624 + (CATA)n Simple_repeat Simple_repeat 1 90 0 8 968 349 264 0 0 chr11 50292243 50292315 -71551541 + B4 SINE B4 217 288 -4 8 968 391 337 77 12 chr11 50292507 50292753 -71551103 + L1M5 LINE L1 4144 4405 -1741 8 968 348 272 167 40 chr11 50292935 50293171 -71550685 - Tigger7 DNA MER2_type -2 2489 2226 8 968 601 155 41 0 chr11 50293174 50293271 -71550585 - B1_Mur1 SINE Alu -8 141 41 8 968 339 202 47 23 chr11 50293206 50293292 -71550564 - MT2B LTR ERVL -338 263 176 8 968 591 15 0 0 chr11 50293340 50293408 -71550448 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 968 457 236 0 0 chr11 50293414 50293503 -71550353 - RSINE1 SINE B4 -3 162 74 8 968 597 266 171 19 chr11 50293766 50294030 -71549826 + MLT1A0 LTR MaLR 59 362 -3 8 968 225 0 0 0 chr11 50294047 50294072 -71549784 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 8 968 833 278 30 30 chr11 50294291 50294521 -71549335 - B4A SINE B4 -43 249 20 8 968 999 285 150 24 chr11 50295019 50295479 -71548377 - MT2A LTR ERVL -14 519 2 8 968 535 233 62 19 chr11 50297346 50297508 -71546348 - RLTR42-int LTR ERVK -4121 1401 1233 8 968 259 279 0 37 chr11 50297797 50297879 -71545977 + ID4_ SINE ID 1 79 -4 8 968 708 255 0 0 chr11 50298022 50298171 -71545685 + RSINE1 SINE B4 3 151 -14 8 968 1246 34 7 0 chr11 50298190 50298336 -71545520 + B1_Mus2 SINE Alu 1 147 0 8 968 227 54 27 0 chr11 50298336 50298373 -71545483 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 8 968 379 263 160 23 chr11 50298503 50298678 -71545178 + L1M4 LINE L1 5111 5309 -837 8 968 1037 117 0 7 chr11 50298742 50299011 -71544845 + (CA)n Simple_repeat Simple_repeat 1 267 0 8 968 344 252 69 9 chr11 50299107 50299223 -71544633 + L1M1 LINE L1 5482 5604 -699 8 968 523 295 28 28 chr11 50299227 50299370 -71544486 + RSINE1 SINE B4 3 145 -20 8 968 1059 267 99 43 chr11 50299472 50299889 -71543967 + L1MA6 LINE L1 5654 6099 -201 8 968 806 230 26 16 chr11 50299889 50300083 -71543773 + B3A SINE B2 1 196 -2 8 968 1059 267 99 43 chr11 50300083 50300151 -71543705 + L1MA6 LINE L1 6100 6166 -134 8 968 486 49 0 0 chr11 50300223 50300284 -71543572 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 968 428 0 0 19 chr11 50300282 50300335 -71543521 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 8 968 301 200 18 0 chr11 50300335 50300390 -71543466 + L1MEg LINE L1 1883 1938 -4146 8 968 222 215 275 12 chr11 50300862 50300942 -71542914 - RSINE1 SINE B4 -63 102 2 8 968 423 0 0 0 chr11 50301401 50301448 -71542408 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 968 710 226 31 123 chr11 50301926 50302150 -71541706 + B4 SINE B4 1 203 -89 8 968 468 259 0 217 chr11 50302150 50302357 -71541499 + RSINE1 SINE B4 4 165 0 8 968 247 182 188 43 chr11 50302413 50302482 -71541374 + B4 SINE B4 214 292 0 8 968 21 0 0 0 chr11 50302597 50302618 -71541238 + AT_rich Low_complexity Low_complexity 1 21 0 8 968 330 172 31 0 chr11 50302997 50303061 -71540795 - ID_B1 SINE B4 -73 151 86 8 968 1104 205 5 36 chr11 50303114 50303337 -71540519 - B3 SINE B2 0 216 1 8 968 364 286 12 12 chr11 50303864 50304030 -71539826 + (CA)n Simple_repeat Simple_repeat 2 167 0 8 968 432 0 0 0 chr11 50304059 50304107 -71539749 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 968 463 304 70 46 chr11 50304243 50304534 -71539322 - MLT1C LTR MaLR -74 393 61 8 968 1030 121 97 0 chr11 50304668 50304819 -71539037 + B2_Mm2 SINE B2 1 161 -34 8 968 261 0 0 0 chr11 50304819 50304848 -71539008 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 968 1030 121 97 0 chr11 50304848 50304861 -71538995 + B2_Mm2 SINE B2 162 180 -15 8 968 194 312 133 42 chr11 50305121 50305385 -71538471 - L2 LINE L2 -2065 1354 1067 8 968 784 211 93 25 chr11 50305601 50305805 -71538051 + ID_B1 SINE B4 1 218 -6 8 968 258 329 151 20 chr11 50307231 50307383 -71536473 + ORR1E LTR MaLR 4 175 -184 8 968 560 318 35 6 chr11 50307726 50307897 -71535959 + B4 SINE B4 96 271 -21 8 968 345 109 0 0 chr11 50308045 50308100 -71535756 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 968 272 272 66 71 chr11 50308201 50308399 -71535457 - L1ME2z LINE L1 -371 6073 5877 8 968 1228 276 98 20 chr11 50308463 50308903 -71534953 + Charlie1 DNA MER1_type 1584 2057 -724 8 968 355 331 12 59 chr11 50308918 50309088 -71534768 + Charlie1 DNA MER1_type 2001 2162 -619 8 968 358 252 96 66 chr11 50309441 50309577 -71534279 + MLT1A1 LTR MaLR 264 403 -5 8 968 653 289 21 11 chr11 50309599 50309788 -71534068 + LTR40c LTR ERVL 101 291 -174 8 968 631 339 61 50 chr11 50309799 50310159 -71533697 - MTEb LTR MaLR -15 364 1 8 968 180 0 0 0 chr11 50310282 50310302 -71533554 + (A)n Simple_repeat Simple_repeat 1 20 0 8 968 751 275 94 70 chr11 50310302 50310630 -71533226 - MTE2a LTR MaLR -43 336 1 8 968 1418 258 56 58 chr11 50310882 50311380 -71532476 + Charlie1 DNA MER1_type 2281 2777 -4 8 968 360 344 98 61 chr11 50311661 50311825 -71532031 - MER115 DNA Tip100 -436 257 88 8 968 264 260 75 19 chr11 50311880 50311986 -71531870 + ORR1E LTR MaLR 1 112 -247 8 968 290 278 75 32 chr11 50312074 50312167 -71531689 + MLT1A1 LTR MaLR 300 396 -12 8 968 189 74 0 0 chr11 50312462 50312489 -71531367 + (T)n Simple_repeat Simple_repeat 1 27 0 8 968 395 300 20 73 chr11 50312540 50312691 -71531165 + B4 SINE B4 1 143 -149 8 968 218 220 60 0 chr11 50312768 50312818 -71531038 + RSINE1 SINE B4 64 116 -49 8 968 29 0 0 0 chr11 50312828 50312857 -71530999 + AT_rich Low_complexity Low_complexity 1 29 0 8 968 24 53 0 0 chr11 50313013 50313051 -71530805 + AT_rich Low_complexity Low_complexity 1 38 0 8 968 618 189 12 12 chr11 50313349 50313520 -71530336 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 8 968 415 141 22 0 chr11 50313576 50313668 -71530188 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 8 968 232 169 14 27 chr11 50313762 50313835 -71530021 + (TCCA)n Simple_repeat Simple_repeat 3 74 0 8 968 615 14 0 0 chr11 50314376 50314448 -71529408 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 968 740 302 178 34 chr11 50315538 50315887 -71527969 + FordPrefect_a DNA Tip100 83 507 -1 8 968 901 264 132 0 chr11 50316981 50317239 -71526617 + B4A SINE B4 1 292 0 8 968 421 255 167 0 chr11 50317697 50317867 -71525989 - MLT1B LTR MaLR -17 450 175 8 968 538 252 49 35 chr11 50317927 50318071 -71525785 - ID_B1 SINE B4 0 224 79 8 968 968 255 14 24 chr11 50318088 50318301 -71525555 - B3 SINE B2 0 216 6 8 968 328 307 143 26 chr11 50318298 50318452 -71525404 - MLT1B LTR MaLR -211 179 8 8 968 884 293 111 43 chr11 50319332 50319682 -71524174 + Tigger7 DNA MER2_type 39 412 -2079 8 968 460 325 139 25 chr11 50319819 50320056 -71523800 + RMER15 LTR ERVL 275 538 -37 8 968 251 377 29 0 chr11 50320127 50320196 -71523660 + Tigger7 DNA MER2_type 2412 2482 -9 8 968 247 271 39 109 chr11 50320233 50320361 -71523495 - MIR SINE MIR -90 178 63 8 968 315 334 92 118 chr11 50320964 50321378 -71522478 + MLT1A1 LTR MaLR 3 405 -3 8 968 342 302 177 19 chr11 50321510 50321719 -71522137 - L1MB8 LINE L1 -115 6063 5822 8 968 258 177 0 0 chr11 50321927 50322019 -71521837 + CT-rich Low_complexity Low_complexity 1 92 0 8 968 479 244 126 0 chr11 50322019 50322138 -71521718 - B1_Mus1 SINE Alu -2 146 13 9 968 557 28 14 0 chr11 50322141 50322212 -71521644 + (TC)n Simple_repeat Simple_repeat 1 72 0 9 968 411 246 81 0 chr11 50322225 50322322 -71521534 - B1F SINE Alu -15 112 1 9 968 280 281 0 0 chr11 50322401 50322458 -71521398 - RSINE1 SINE B4 -108 57 1 9 968 326 222 32 0 chr11 50322477 50322540 -71521316 - PB1 SINE Alu -42 85 21 9 968 655 309 74 0 chr11 50322560 50322735 -71521121 - MLT1E3 LTR MaLR -161 463 276 9 968 1711 198 97 3 chr11 50322735 50323064 -71520792 - ORR1D2 LTR MaLR 0 370 11 9 968 379 325 47 17 chr11 50323158 50323330 -71520526 - MLT1E3 LTR MaLR -447 177 1 9 968 728 281 0 0 chr11 50323544 50323697 -71520159 + RSINE1 SINE B4 12 164 -1 9 968 337 45 0 22 chr11 50323709 50323754 -71520102 + HAL1-3A_ME LINE L1 1976 2019 -839 9 968 186 43 0 0 chr11 50323754 50323777 -71520079 + (CAG)n Simple_repeat Simple_repeat 1 23 0 9 968 343 281 73 67 chr11 50323958 50324122 -71519734 + L1MD LINE L1 4158 4322 -1824 9 968 797 232 13 0 chr11 50324181 50324332 -71519524 + RSINE1 SINE B4 6 158 -7 9 968 229 261 100 132 chr11 50324184 50324374 -71519482 + B2_Mm1t SINE B2 8 191 -2 9 968 856 283 56 13 chr11 50324442 50324675 -71519181 - 7SK RNA RNA -86 245 3 9 968 1784 184 30 3 chr11 50325066 50325399 -71518457 + MTD LTR MaLR 70 411 -8 9 968 693 270 30 6 chr11 50326017 50326181 -71517675 + B4A SINE B4 115 282 -10 9 968 854 233 21 21 chr11 50326684 50326877 -71516979 + RMER30 DNA MER1_type 5 197 -5 9 968 1788 178 45 28 chr11 50326888 50327240 -71516616 + MTC LTR MaLR 1 358 -63 9 968 865 200 11 51 chr11 50327244 50327475 -71516381 - RLTR12B LTR ERVK -134 434 206 9 968 220 194 0 0 chr11 50327475 50327511 -71516345 + polypyrimidine Low_complexity Low_complexity 2 37 0 9 968 1686 127 19 34 chr11 50327513 50327825 -71516031 - RLTR12B LTR ERVK -254 314 1 9 968 240 210 18 18 chr11 50327825 50327892 -71515964 + MTE2a LTR MaLR 293 359 0 9 968 426 234 47 39 chr11 50328223 50328352 -71515504 + RMER15 LTR ERVL 1 130 -445 9 968 894 211 34 9 chr11 50328397 50328636 -71515220 + RMER15 LTR ERVL 293 572 -3 9 968 282 267 32 32 chr11 50328712 50328805 -71515051 - MLT1A0 LTR MaLR -17 488 396 9 968 338 295 42 0 chr11 50328801 50328896 -71514960 - MLT1A0 LTR MaLR -126 239 141 9 968 861 165 261 23 chr11 50328896 50328996 -71514860 - RMER1C Other Other -4 1338 1226 9 968 789 90 0 0 chr11 50328996 50329107 -71514749 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 9 968 180 77 0 0 chr11 50329112 50329138 -71514718 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 968 861 165 261 23 chr11 50329138 50329291 -71514565 - RMER1C Other Other -149 1193 1019 9 968 347 292 98 18 chr11 50329895 50330059 -71513797 - Lx8 LINE L1 -6 7467 7291 9 968 1666 270 34 16 chr11 50330213 50330778 -71513078 + L1MA6 LINE L1 5543 6117 -183 9 968 380 301 52 26 chr11 50330828 50330944 -71512912 - PB1D9 SINE Alu 0 120 2 9 968 837 252 29 10 chr11 50330951 50331159 -71512697 - ID_B1 SINE B4 -8 216 5 9 968 773 281 68 29 chr11 50331255 50331533 -71512323 - B4A SINE B4 -2 290 2 9 968 216 97 0 0 chr11 50331605 50331636 -71512220 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 969 673 314 6 0 chr11 50331676 50331835 -71512021 - RSINE1 SINE B4 -4 161 2 9 969 262 291 0 95 chr11 50331856 50331867 -71511989 + MT2B LTR ERVL 155 156 -445 9 969 741 237 0 0 chr11 50331867 50332006 -71511850 + B1_Mur2 SINE Alu 2 140 -9 9 969 378 0 0 0 chr11 50332022 50332064 -71511792 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 969 324 296 83 9 chr11 50332292 50332401 -71511455 - L1M5 LINE L1 -829 5317 5201 9 969 263 302 11 11 chr11 50332549 50332636 -71511220 + MER2B DNA MER2_type 79 165 -171 9 969 227 271 0 0 chr11 50332905 50332953 -71510903 + ID4_ SINE ID 28 75 -8 9 969 203 146 24 0 chr11 50332953 50332994 -71510862 + GA-rich Low_complexity Low_complexity 2 43 0 9 969 755 245 6 36 chr11 50333197 50333362 -71510494 - RSINE1 SINE B4 0 165 6 9 969 192 40 0 0 chr11 50334101 50334126 -71509730 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 969 665 241 185 31 chr11 50334640 50334867 -71508989 - B4A SINE B4 0 292 31 9 969 793 191 26 62 chr11 50334883 50335078 -71508778 - B3A SINE B2 -10 188 1 9 969 792 242 38 0 chr11 50335765 50335836 -71508020 + ID SINE ID 8 85 -139 9 969 361 304 48 61 chr11 50335836 50335963 -71507893 + B1F2 SINE Alu 1 134 -15 9 969 186 43 0 0 chr11 50335963 50335986 -71507870 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 969 225 0 0 0 chr11 50335993 50336018 -71507838 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 969 361 304 48 61 chr11 50336018 50336029 -71507827 + B1F2 SINE Alu 139 145 -4 9 969 263 255 19 12 chr11 50336024 50336040 -71507816 + B4 SINE B4 70 112 -112 9 969 291 208 0 0 chr11 50336040 50336093 -71507763 + PB1D9 SINE Alu 1 53 -67 9 969 263 255 19 12 chr11 50336093 50336104 -71507752 + B4 SINE B4 113 148 -76 9 969 244 0 0 158 chr11 50336108 50336228 -71507628 + (CAGAG)n Simple_repeat Simple_repeat 5 105 0 9 969 428 226 5 54 chr11 50336231 50336341 -71507515 + B1_Mur4 SINE Alu 42 149 0 9 969 243 0 0 0 chr11 50336371 50336398 -71507458 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 969 860 242 0 0 chr11 50337290 50337451 -71506405 - RSINE1 SINE B4 0 165 5 9 969 2514 210 21 44 chr11 50337930 50338449 -71505407 + RLTR18B LTR ERVK 1 507 -5 9 969 502 268 16 8 chr11 50338453 50338581 -71505275 + MER2B DNA MER2_type 168 296 -40 9 969 816 188 0 39 chr11 50339123 50339278 -71504578 - B1_Mur2 SINE Alu 0 149 1 9 969 476 279 106 7 chr11 50339315 50339342 -71504514 - RSINE1 SINE B4 -9 156 131 9 969 387 0 0 0 chr11 50339342 50339385 -71504471 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 969 476 279 106 7 chr11 50339385 50339498 -71504358 - RSINE1 SINE B4 -35 130 3 9 969 752 219 18 18 chr11 50339748 50339911 -71503945 - RLTR14 LTR ERV1 -134 248 86 9 969 376 245 21 0 chr11 50339908 50340002 -71503854 - RLTR14 LTR ERV1 -263 119 24 9 969 452 177 45 5 chr11 50340241 50340464 -71503392 + (TA)n Simple_repeat Simple_repeat 1 232 0 9 969 327 130 0 0 chr11 50341899 50341953 -71501903 + (TCTG)n Simple_repeat Simple_repeat 4 57 0 9 969 268 351 208 17 chr11 50342425 50342776 -71501080 + MLT1K LTR MaLR 14 431 -164 9 969 228 245 38 0 chr11 50343062 50343115 -71500741 - MLT1K LTR MaLR -344 251 197 9 969 887 221 153 0 chr11 50343724 50343914 -71499942 - ID_B1 SINE B4 -4 220 2 9 969 560 292 46 0 chr11 50344629 50344759 -71499097 + RSINE1 SINE B4 13 148 -17 9 969 300 27 0 0 chr11 50344765 50344802 -71499054 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 969 3069 230 40 11 chr11 50344900 50345643 -71498213 - RMER1C Other Other 0 1342 578 9 969 306 304 158 54 chr11 50345642 50345958 -71497898 - L1ME2 LINE L1 -31 6133 5785 9 969 288 0 0 0 chr11 50346044 50346076 -71497780 + (TTA)n Simple_repeat Simple_repeat 2 33 0 9 969 742 204 84 52 chr11 50346228 50346419 -71497437 - B3A SINE B2 0 198 2 9 969 22 35 0 0 chr11 50346515 50346544 -71497312 + AT_rich Low_complexity Low_complexity 1 29 0 9 969 243 0 0 0 chr11 50346558 50346585 -71497271 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 969 317 203 34 0 chr11 50346607 50346666 -71497190 - RSINE1 SINE B4 -38 127 67 9 969 369 264 4 0 chr11 50346788 50346919 -71496937 - L1ME2 LINE L1 -775 5528 5396 9 969 411 243 17 70 chr11 50347006 50347121 -71496735 + B3A SINE B2 76 184 -14 9 969 242 87 22 0 chr11 50347122 50347168 -71496688 + (CAA)n Simple_repeat Simple_repeat 2 48 0 9 969 423 269 66 25 chr11 50347201 50347323 -71496533 + B4 SINE B4 143 269 -23 9 969 1170 256 17 68 chr11 50347398 50347692 -71496164 - B4A SINE B4 -2 290 12 9 969 315 301 16 47 chr11 50347785 50347914 -71495942 + MLT1A1 LTR MaLR 272 396 -12 9 969 1074 75 7 0 chr11 50348105 50348251 -71495605 - URR1A DNA MER1_type 0 226 80 9 969 369 222 85 36 chr11 50348547 50348692 -71495164 + MIRb SINE MIR 47 208 -60 9 969 352 295 44 64 chr11 50349200 50349268 -71494588 - RLTR42-int LTR ERVK -4122 1400 1334 9 969 2006 169 18 73 chr11 50349268 50349664 -71494192 - ORR1D1 LTR MaLR 0 374 1 9 969 352 295 44 64 chr11 50349664 50349845 -71494011 - RLTR42-int LTR ERVK -4189 1333 1156 9 969 1563 190 56 61 chr11 50350702 50351078 -71492778 + ORR1D1 LTR MaLR 1 374 0 9 969 4508 182 5 16 chr11 50351404 50352295 -71491561 - Lx2B LINE L1 -145 6855 5975 9 969 1038 206 19 9 chr11 50352295 50352511 -71491345 - ID_B1 SINE B4 -6 218 1 9 969 240 214 57 0 chr11 50352511 50352528 -71491328 - Lx2B LINE L1 -680 5974 5954 9 969 485 246 63 0 chr11 50352845 50352971 -71490885 - B1F2 SINE Alu -15 134 1 9 969 239 228 103 48 chr11 50353588 50353718 -71490138 - MIRm SINE MIR -94 174 40 9 969 231 222 0 0 chr11 50354597 50354642 -71489214 - MTE2a LTR MaLR -14 405 361 9 969 2587 171 74 13 chr11 50354643 50355182 -71488674 + Lx9 LINE L1 7066 7637 -7 9 969 997 249 70 44 chr11 50355371 50355621 -71488235 - MTE2a LTR MaLR -43 336 79 9 969 4192 120 63 48 chr11 50355621 50356366 -71487490 + RMER6A LTR ERVK 1 756 0 9 969 997 305 89 45 chr11 50356366 50356464 -71487392 - MTE2a LTR MaLR -309 110 10 9 969 280 250 10 93 chr11 50356938 50357035 -71486821 - MLT1A1 LTR MaLR 0 408 320 9 969 37 39 0 0 chr11 50357209 50357260 -71486596 + AT_rich Low_complexity Low_complexity 1 51 0 9 969 753 239 58 32 chr11 50357262 50357452 -71486404 - B3A SINE B2 -2 196 2 9 969 620 249 17 25 chr11 50358043 50358224 -71485632 + B3A SINE B2 32 216 0 9 969 1049 216 10 19 chr11 50358231 50358439 -71485417 - B3 SINE B2 -6 210 5 9 969 397 312 0 0 chr11 50360964 50361057 -71482799 + RSINE1 SINE B4 20 112 -53 9 969 514 173 164 0 chr11 50361233 50361337 -71482519 + ID_B1 SINE B4 102 222 -2 9 969 226 119 67 67 chr11 50361297 50361342 -71482514 + B1F SINE Alu 105 149 0 9 969 421 297 18 49 chr11 50361686 50361849 -71482007 - MT2A LTR ERVL -133 400 243 9 969 264 263 57 95 chr11 50361885 50361990 -71481866 - MT2A LTR ERVL -295 238 138 9 969 360 0 0 0 chr11 50362579 50362619 -71481237 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 969 559 246 196 45 chr11 50362619 50362798 -71481058 - B4A SINE B4 -23 269 64 1 969 1553 179 226 84 chr11 50362809 50363214 -71480642 + MT2A LTR ERVL 4 455 -78 1 969 432 0 0 0 chr11 50363214 50363262 -71480594 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 969 1553 179 226 84 chr11 50363262 50363320 -71480536 + MT2A LTR ERVL 456 532 -1 1 969 541 218 102 43 chr11 50363506 50363693 -71480163 - Cheshire DNA MER1_type -160 2260 2063 1 969 253 276 86 9 chr11 50363864 50363994 -71479862 - L1M4 LINE L1 -326 5848 5707 1 969 210 297 80 13 chr11 50364251 50364326 -71479530 - ID SINE ID -144 80 1 1 969 382 319 49 7 chr11 50364328 50364470 -71479386 - B1F SINE Alu 0 149 2 1 969 23 0 0 0 chr11 50364488 50364511 -71479345 + AT_rich Low_complexity Low_complexity 1 23 0 1 969 1107 228 10 0 chr11 50364511 50364717 -71479139 - B3 SINE B2 -7 209 2 1 969 887 331 108 15 chr11 50364902 50365356 -71478500 + MLT1D LTR MaLR 1 496 -9 1 969 1199 256 63 47 chr11 50365389 50365442 -71478414 - MTEb LTR MaLR 0 379 324 1 969 2811 193 173 14 chr11 50365442 50366078 -71477778 + RMER19A LTR ERVK 1 737 0 1 969 1199 256 63 47 chr11 50366078 50366389 -71477467 - MTEb LTR MaLR -56 323 9 1 969 351 237 91 20 chr11 50366427 50366526 -71477330 + MLT1E3 LTR MaLR 113 218 -435 1 969 759 182 57 28 chr11 50366527 50366668 -71477188 + B1_Mur3 SINE Alu 5 149 0 1 969 418 317 58 67 chr11 50366812 50367035 -71476821 + MLT1E3 LTR MaLR 401 621 -3 1 969 233 320 29 0 chr11 50367035 50367138 -71476718 - L1MD LINE L1 -1254 4892 4787 1 969 295 276 104 9 chr11 50367394 50367500 -71476356 + MLT1H2 LTR MaLR 372 487 -2 1 969 277 242 133 7 chr11 50367517 50367667 -71476189 - L1MEb LINE L1 -2694 4312 4144 1 969 270 0 0 0 chr11 50367668 50367698 -71476158 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 969 1285 27 0 0 chr11 50367734 50367881 -71475975 - B1_Mus2 SINE Alu 0 147 1 1 969 1956 138 68 106 chr11 50368031 50368238 -71475618 + ORR1C2 LTR MaLR 1 188 -196 1 969 414 39 0 0 chr11 50368238 50368290 -71475566 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 1 969 1956 138 68 106 chr11 50368290 50368480 -71475376 + ORR1C2 LTR MaLR 189 383 -1 1 969 839 37 0 9 chr11 50368529 50368637 -71475219 + (TTC)n Simple_repeat Simple_repeat 2 108 0 1 969 230 271 32 56 chr11 50368670 50368795 -71475061 - L1MEb LINE L1 -3093 3913 3792 1 969 303 93 0 0 chr11 50368805 50368848 -71475008 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 1 969 253 273 91 0 chr11 50368873 50368939 -71474917 - ID4 SINE ID -8 75 4 1 969 689 305 20 12 chr11 50368950 50369202 -71474654 - L1MEb LINE L1 -3260 3746 3493 1 969 546 197 142 0 chr11 50369202 50369329 -71474527 - B3 SINE B2 -69 147 3 1 969 477 340 54 47 chr11 50369330 50369654 -71474202 - L1MEb LINE L1 -3652 3682 3228 1 969 2126 298 121 24 chr11 50369699 50370787 -71473069 - Lx8 LINE L1 -55 7418 6225 1 969 29 0 0 0 chr11 50371113 50371142 -71472714 + AT_rich Low_complexity Low_complexity 1 29 0 1 969 706 269 14 0 chr11 50371254 50371399 -71472457 - RSINE1 SINE B4 -17 148 2 1 969 431 294 104 17 chr11 50371491 50371875 -71471981 - L1MEb LINE L1 -5133 1969 1554 1 969 22 0 0 0 chr11 50371875 50371897 -71471959 + AT_rich Low_complexity Low_complexity 1 22 0 1 969 777 201 14 0 chr11 50371897 50372036 -71471820 - B1_Mur2 SINE Alu -6 143 3 1 969 629 333 90 58 chr11 50372214 50372590 -71471266 - MLT1F2 LTR MaLR 0 560 173 1 969 531 293 79 22 chr11 50372653 50372831 -71471025 - MER20 DNA MER1_type -2 217 30 1 969 323 308 35 73 chr11 50372929 50373143 -71470713 + B4A SINE B4 12 208 -84 1 969 223 167 0 0 chr11 50373711 50373753 -71470103 + (CCCTG)n Simple_repeat Simple_repeat 3 44 0 1 969 353 22 22 0 chr11 50374043 50374089 -71469767 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 969 700 191 15 8 chr11 50374132 50374264 -71469592 + B3 SINE B2 1 133 -83 1 969 1060 82 7 27 chr11 50374307 50374457 -71469399 + B1_Mus1 SINE Alu 1 147 -1 1 969 264 213 118 78 chr11 50375157 50375259 -71468597 - MER102a DNA MER1_type -2 328 223 1 969 426 221 0 0 chr11 50375289 50375366 -71468490 + ID4_ SINE ID 3 79 -4 1 969 662 289 28 37 chr11 50375482 50375698 -71468158 - Tigger5 DNA MER2_type -15 2391 2178 1 969 244 227 0 0 chr11 50375713 50375757 -71468099 + RMER30 DNA MER1_type 8 51 -151 1 969 789 257 64 45 chr11 50375830 50376050 -71467806 - Tigger5 DNA MER2_type -2182 224 1 1 969 525 267 105 32 chr11 50376561 50376809 -71467047 - MER44A DNA MER2_type -10 329 64 1 969 328 363 50 6 chr11 50376845 50377025 -71466831 + Lx8 LINE L1 7034 7221 -252 1 969 465 252 119 22 chr11 50377025 50377159 -71466697 + RMER15 LTR ERVL 413 559 -16 1 969 231 367 102 53 chr11 50378150 50378337 -71465519 - LTR78 LTR ERV1 -966 338 143 1 969 252 0 0 0 chr11 50379732 50379760 -71464096 + (T)n Simple_repeat Simple_repeat 1 28 0 1 969 1293 140 72 0 chr11 50379899 50380106 -71463750 - URR1A DNA MER1_type 0 226 5 1 969 1434 29 0 0 chr11 50380200 50380407 -71463449 + (GA)n Simple_repeat Simple_repeat 1 207 0 1 969 584 217 17 0 chr11 50381210 50381330 -71462526 - B1_Mur1 SINE Alu -8 141 20 1 969 228 254 32 0 chr11 50381358 50381421 -71462435 + MER2 DNA MER2_type 95 159 -186 1 969 255 31 0 0 chr11 50381434 50381466 -71462390 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 969 1332 278 80 31 chr11 50381487 50382140 -71461716 - L1MA5 LINE L1 -359 5938 5278 1 969 590 180 120 87 chr11 50382140 50382323 -71461533 - B2_Mm2 SINE B2 -2 193 5 1 969 1624 289 106 20 chr11 50382333 50383182 -71460674 - L1MA5 LINE L1 -864 5279 4358 1 969 389 310 145 6 chr11 50383292 50383464 -71460392 - MLT-int LTR MaLR -15 1720 1525 1 969 189 0 0 0 chr11 50384791 50384812 -71459044 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 969 1620 121 9 0 chr11 50385473 50385697 -71458159 - URR1A DNA MER1_type 0 226 1 1 969 278 320 0 0 chr11 50385832 50385910 -71457946 + (CACCC)n Simple_repeat Simple_repeat 5 82 0 1 969 363 178 110 73 chr11 50385953 50386062 -71457794 + PB1D10 SINE Alu 1 113 -4 1 969 326 328 52 17 chr11 50386092 50386275 -71457581 + MIRb SINE MIR 64 258 -10 1 969 940 277 21 30 chr11 50386381 50386712 -71457144 - RLTR15 LTR ERVK -31 328 1 1 969 642 114 0 0 chr11 50386747 50386835 -71457021 + B1_Mus2 SINE Alu 43 130 -17 1 969 379 350 75 28 chr11 50386843 50387055 -71456801 + MLT1B LTR MaLR 169 390 0 1 969 643 228 0 0 chr11 50387357 50387471 -71456385 + PB1D10 SINE Alu 1 114 -3 1 969 241 354 13 0 chr11 50387473 50387552 -71456304 + ID4 SINE ID 4 83 0 1 969 791 287 50 54 chr11 50387677 50387957 -71455899 + B4A SINE B4 2 280 -12 1 969 315 0 0 0 chr11 50387969 50388004 -71455852 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 969 181 163 41 0 chr11 50388011 50388060 -71455796 + GA-rich Low_complexity Low_complexity 2 52 0 1 969 252 0 0 0 chr11 50388432 50388460 -71455396 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 969 686 290 67 14 chr11 50388899 50389109 -71454747 - ID_B1 SINE B4 -2 222 2 1 969 702 314 62 48 chr11 50390484 50390839 -71453017 - MLT1B LTR MaLR -30 360 1 1 969 583 298 96 71 chr11 50392236 50392518 -71451338 + B4A SINE B4 2 290 -2 1 969 2738 147 24 26 chr11 50392728 50393195 -71450661 - RMER4A LTR ERVK 0 466 1 1 969 302 295 8 58 chr11 50393195 50393368 -71450488 - MLT1A0 LTR MaLR -208 157 1 1 969 449 80 313 26 chr11 50394682 50394797 -71449059 - B2_Mm2 SINE B2 0 195 48 1 969 940 80 126 7 chr11 50394875 50395026 -71448830 - B2_Mm1t SINE B2 -22 171 3 1 969 353 256 114 15 chr11 50395026 50395157 -71448699 - L1M2 LINE L1 -1027 5116 4973 1 969 2954 236 114 51 chr11 50395352 50395720 -71448136 + RMER17B LTR ERVK 1 424 -534 1 969 879 0 9 18 chr11 50395720 50395833 -71448023 + (TTCTC)n Simple_repeat Simple_repeat 5 116 0 1 969 2954 236 114 51 chr11 50395833 50396365 -71447491 + RMER17B LTR ERVK 425 957 -1 1 969 1982 150 34 81 chr11 50396671 50397078 -71446778 - ORR1B1 LTR MaLR -6 388 1 1 969 369 0 0 0 chr11 50397176 50397217 -71446639 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 969 2315 149 32 8 chr11 50398011 50398383 -71445473 - RLTR14 LTR ERV1 -1 381 1 1 969 2435 83 0 60 chr11 50399124 50399472 -71444384 - ORR1A2 LTR MaLR 0 327 1 1 969 357 293 0 65 chr11 50400407 50400531 -71443325 + PB1D10 SINE Alu 1 116 -1 1 969 1064 231 74 53 chr11 50401145 50401428 -71442428 + B4A SINE B4 2 290 -2 1 969 305 344 90 32 chr11 50401795 50401948 -71441908 + MLT1H-int LTR MaLR 613 774 -635 1 969 342 0 0 0 chr11 50401948 50401986 -71441870 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 969 305 344 90 32 chr11 50401986 50402021 -71441835 + MLT1H-int LTR MaLR 775 812 -597 1 969 730 242 43 5 chr11 50402051 50402238 -71441618 + B3 SINE B2 6 199 -17 1 969 261 341 31 63 chr11 50402319 50402474 -71441382 - ORR1E LTR MaLR -170 189 37 1 969 1065 65 0 35 chr11 50402474 50402617 -71441239 + B1_Mus1 SINE Alu 2 139 -9 1 969 725 0 12 0 chr11 50402617 50402702 -71441154 + (CAAAC)n Simple_repeat Simple_repeat 2 87 0 1 969 261 341 31 63 chr11 50402702 50402736 -71441120 - ORR1E LTR MaLR -323 36 6 1 969 397 168 315 9 chr11 50402838 50402946 -71440910 + URR1A DNA MER1_type 1 141 -85 1 969 342 333 70 112 chr11 50403034 50403321 -71440535 - B4 SINE B4 0 292 18 1 969 518 222 139 0 chr11 50404082 50404226 -71439630 + ID_B1 SINE B4 2 165 -59 1 969 438 216 59 0 chr11 50404277 50404379 -71439477 + ID_B1 SINE B4 108 215 -9 1 969 833 244 187 0 chr11 50405929 50406175 -71437681 + B4A SINE B4 1 292 0 1 969 315 0 0 0 chr11 50406190 50406225 -71437631 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 969 283 279 0 14 chr11 50407381 50407450 -71436406 + C-rich Low_complexity Low_complexity 1 68 0 1 969 220 341 25 9 chr11 50408194 50408319 -71435537 + L2a LINE L2 2994 3118 -308 1 969 565 298 29 18 chr11 50408640 50408811 -71435045 + Tigger5 DNA MER2_type 1 173 -2233 1 969 268 218 11 11 chr11 50408813 50408901 -71434955 + CT-rich Low_complexity Low_complexity 1 88 0 1 969 586 283 174 0 chr11 50408904 50409088 -71434768 - ID_B1 SINE B4 -7 217 2 1 969 826 240 137 4 chr11 50410208 50410442 -71433414 + B4A SINE B4 5 269 -23 1 969 237 119 0 0 chr11 50410442 50410484 -71433372 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 969 545 161 168 9 chr11 50410598 50410711 -71433145 + B1_Mus1 SINE Alu 3 133 -15 1 969 1252 129 68 15 chr11 50412781 50412986 -71430870 - B3 SINE B2 0 216 1 1 969 333 102 0 0 chr11 50413103 50413162 -71430694 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 1 969 290 333 103 56 chr11 50413347 50413579 -71430277 + MER113 DNA MER1_type 237 479 -42 1 969 489 281 0 9 chr11 50414068 50414183 -71429673 - PB1D7 SINE Alu -2 118 5 1 969 189 0 0 0 chr11 50414978 50414999 -71428857 + (T)n Simple_repeat Simple_repeat 1 21 0 1 969 272 331 0 14 chr11 50415408 50415552 -71428304 + C-rich Low_complexity Low_complexity 2 143 0 1 969 234 192 0 0 chr11 50415710 50415762 -71428094 + (CTG)n Simple_repeat Simple_repeat 3 54 0 1 969 350 250 29 29 chr11 50418964 50419067 -71424789 + CT-rich Low_complexity Low_complexity 3 105 0 1 969 187 303 94 5 chr11 50419225 50419324 -71424532 - MIRb SINE MIR -137 131 25 1 969 305 383 47 0 chr11 50419526 50419675 -71424181 - MER5A1 DNA MER1_type -10 156 1 1 969 183 42 0 0 chr11 50419803 50419827 -71424029 + (CATG)n Simple_repeat Simple_repeat 1 24 0 1 969 345 24 0 0 chr11 50419840 50419882 -71423974 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 969 450 0 0 0 chr11 50419882 50419931 -71423925 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 969 267 259 25 21 chr11 50420268 50420359 -71423497 - MLT1K LTR MaLR -29 581 505 1 969 194 311 135 8 chr11 50421025 50421158 -71422698 - MIRb SINE MIR -74 194 45 1 969 279 340 19 0 chr11 50422125 50422231 -71421625 - MLT1K LTR MaLR -27 568 461 1 969 196 326 95 0 chr11 50423059 50423154 -71420702 + L2 LINE L2 2730 2833 -586 1 969 404 303 90 8 chr11 50425294 50425427 -71418429 - B1F2 SINE Alu -5 144 1 1 969 478 273 49 12 chr11 50425848 50426011 -71417845 - HAL1-2a_MD LINE L1 -530 2494 2326 1 969 325 245 30 10 chr11 50426076 50426175 -71417681 + (ATGGTG)n Simple_repeat Simple_repeat 6 106 0 1 969 276 91 0 0 chr11 50426660 50426704 -71417152 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 969 863 270 89 28 chr11 50426707 50426955 -71416901 - B4A SINE B4 -29 263 1 1 969 424 314 32 70 chr11 50427121 50427291 -71416565 + MER33 DNA MER1_type 1 159 -165 1 969 369 0 0 0 chr11 50427291 50427332 -71416524 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 969 424 314 32 70 chr11 50427332 50427346 -71416510 + MER33 DNA MER1_type 160 177 -147 1 969 2170 129 102 11 chr11 50427462 50427823 -71416033 - ORR1B1 LTR MaLR 0 394 1 1 969 630 238 135 12 chr11 50427904 50428074 -71415782 + B4A SINE B4 10 200 -92 1 969 443 63 16 0 chr11 50428076 50428139 -71415717 + (TCTCCC)n Simple_repeat Simple_repeat 4 67 0 1 969 531 0 0 0 chr11 50428141 50428200 -71415656 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 969 480 342 93 38 chr11 50428211 50428564 -71415292 - L1M5 LINE L1 -1434 4712 4342 1 969 1148 264 111 6 chr11 50429657 50429989 -71413867 + ORR1D2 LTR MaLR 3 369 -1 1 969 1535 63 0 10 chr11 50430367 50430559 -71413297 + B2_Mm2 SINE B2 1 190 -5 1 969 530 298 14 62 chr11 50430737 50430948 -71412908 + MER21B LTR ERV1 6 206 -657 1 969 295 305 98 52 chr11 50431040 50431213 -71412643 + MER21B LTR ERV1 484 664 -199 1 969 669 13 0 0 chr11 50431402 50431480 -71412376 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 969 389 305 24 30 chr11 50431547 50431716 -71412140 + CT-rich Low_complexity Low_complexity 3 170 0 1 969 1702 213 49 16 chr11 50432065 50432451 -71411405 + MTD LTR MaLR 21 419 0 1 969 609 14 0 0 chr11 50433238 50433308 -71410548 + (TTCTC)n Simple_repeat Simple_repeat 3 72 0 1 969 545 228 194 12 chr11 50433317 50433477 -71410379 - B3A SINE B2 -5 193 5 1 969 651 230 22 0 chr11 50433499 50433634 -71410222 - ID_B1 SINE B4 0 224 87 1 969 269 367 79 33 chr11 50436563 50436777 -71407079 - MLT1K LTR MaLR -271 324 101 1 969 426 121 0 0 chr11 50436804 50436870 -71406986 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 969 599 294 82 34 chr11 50437057 50437325 -71406531 - B4 SINE B4 0 292 12 1 969 240 224 0 0 chr11 50438649 50438698 -71405158 + MIR SINE MIR 82 130 -78 1 969 219 36 0 0 chr11 50439021 50439049 -71404807 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 1 969 329 175 0 58 chr11 50439855 50439901 -71403955 + polypurine Low_complexity Low_complexity 3 48 0 1 969 1148 106 6 0 chr11 50439901 50440080 -71403776 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 1 969 329 175 0 58 chr11 50440080 50440136 -71403720 + polypurine Low_complexity Low_complexity 49 99 0 1 969 620 297 62 36 chr11 50440136 50440328 -71403528 + B3A SINE B2 2 198 0 1 969 332 287 124 73 chr11 50440356 50440589 -71403267 - MLT1K LTR MaLR -93 502 258 1 969 255 258 0 15 chr11 50440603 50440670 -71403186 - MLT1A1 LTR MaLR 0 408 343 1 969 228 275 0 14 chr11 50442498 50442568 -71401288 + CT-rich Low_complexity Low_complexity 3 71 0 1 969 240 245 0 0 chr11 50443663 50443712 -71400144 + CT-rich Low_complexity Low_complexity 4 52 0 1 969 709 314 84 50 chr11 50446759 50447118 -71396738 - MER47B DNA MER2_type -46 372 2 1 969 24 0 0 0 chr11 50447118 50447142 -71396714 + AT_rich Low_complexity Low_complexity 1 24 0 1 969 738 60 0 0 chr11 50447166 50447266 -71396590 + (GA)n Simple_repeat Simple_repeat 1 100 0 1 969 303 266 105 44 chr11 50447266 50447371 -71396485 - RSINE1 SINE B4 -9 156 44 1 969 469 331 53 64 chr11 50447471 50447752 -71396104 - MLT1C LTR MaLR 0 467 190 1 969 419 212 66 210 chr11 50447878 50448164 -71395692 - ORR1E LTR MaLR -19 340 96 1 969 552 203 278 0 chr11 50448307 50448494 -71395362 - MER31A LTR ERV1 -240 245 7 1 969 799 276 49 20 chr11 50450091 50450294 -71393562 + B4 SINE B4 81 289 -3 1 969 546 108 0 0 chr11 50450297 50450380 -71393476 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 969 819 244 126 112 chr11 50451418 50451792 -71392064 - MTE2a LTR MaLR 0 379 1 1 969 309 308 361 8 chr11 50451900 50452257 -71391599 - L2b LINE L2 -185 3241 2759 1 969 262 295 0 37 chr11 50453136 50453245 -71390611 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 969 258 250 24 0 chr11 50453291 50453375 -71390481 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 969 490 275 53 41 chr11 50453376 50453576 -71390280 - MLT1A1 LTR MaLR 0 408 166 1 969 192 213 0 0 chr11 50454526 50454587 -71389269 + (TGG)n Simple_repeat Simple_repeat 1 61 0 1 969 495 205 35 26 chr11 50454845 50454960 -71388896 - B3 SINE B2 0 216 101 1 969 431 304 14 23 chr11 50455602 50455821 -71388035 - L1MD LINE L1 -1516 4630 4414 1 969 276 30 0 0 chr11 50455853 50455886 -71387970 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 969 686 216 7 43 chr11 50455889 50456029 -71387827 - RSINE1 SINE B4 -29 136 2 1 969 441 0 0 0 chr11 50456053 50456102 -71387754 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 969 720 310 128 40 chr11 50456263 50456578 -71387278 - L1M5 LINE L1 -1966 4180 3827 1 969 303 28 0 0 chr11 50456578 50456614 -71387242 + (CAAT)n Simple_repeat Simple_repeat 3 38 0 1 969 720 310 128 40 chr11 50456614 50456752 -71387104 - L1M5 LINE L1 -2320 3826 3687 1 969 920 185 43 11 chr11 50456860 50457034 -71386822 + B3A SINE B2 1 182 -16 1 969 333 0 0 0 chr11 50457034 50457071 -71386785 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 969 369 0 0 0 chr11 50457071 50457111 -71386745 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 969 1987 246 14 2 chr11 50457157 50457580 -71386276 + Lx6 LINE L1 7027 7454 -6 1 969 198 330 20 81 chr11 50457798 50457897 -71385959 + MIRb SINE MIR 56 148 -120 1 969 469 267 9 166 chr11 50457978 50458046 -71385810 - MER33 DNA MER1_type -131 193 136 1 969 1050 156 116 16 chr11 50458046 50458235 -71385621 - B3 SINE B2 -8 208 1 1 969 469 267 9 166 chr11 50458235 50458395 -71385461 - MER33 DNA MER1_type -189 135 1 1 969 207 204 0 0 chr11 50458569 50458623 -71385233 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 969 787 65 16 0 chr11 50458971 50459094 -71384762 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 969 426 85 0 0 chr11 50459094 50459152 -71384704 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 969 968 235 96 19 chr11 50459204 50459511 -71384345 + MTEa LTR MaLR 1 373 -6 1 969 201 327 50 58 chr11 50460159 50460279 -71383577 - L2b LINE L2 -38 3337 3219 1 969 859 280 157 63 chr11 50460481 50460939 -71382917 + MLT1D LTR MaLR 1 501 -4 1 969 228 182 0 0 chr11 50460997 50461041 -71382815 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1 969 561 252 0 84 chr11 50461054 50461197 -71382659 - RSINE1 SINE B4 -32 133 3 1 969 389 307 97 16 chr11 50461213 50461446 -71382410 - L1MD LINE L1 -2988 3158 2904 1 969 590 245 262 17 chr11 50461821 50462058 -71381798 - MLT1A0 LTR MaLR -70 295 1 1 970 348 310 129 72 chr11 50462754 50463032 -71380824 + ORR1D1 LTR MaLR 30 323 -51 1 970 699 252 13 16 chr11 50463046 50463207 -71380649 + ID_B1 SINE B4 83 237 -55 1 970 414 39 0 0 chr11 50464379 50464431 -71379425 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 970 423 0 0 0 chr11 50464491 50464538 -71379318 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 1 970 307 295 23 76 chr11 50464577 50464622 -71379234 - B4A SINE B4 -166 126 82 1 970 513 0 0 0 chr11 50464622 50464679 -71379177 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 970 307 295 23 76 chr11 50464679 50464765 -71379091 - B4A SINE B4 -211 81 2 1 970 744 12 0 0 chr11 50465010 50465095 -71378761 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 970 297 0 0 0 chr11 50465095 50465127 -71378729 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 970 1380 316 58 50 chr11 50465135 50465755 -71378101 - FordPrefect DNA Tip100 -113 1570 946 1 970 189 94 0 0 chr11 50465755 50465787 -71378069 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 970 694 361 80 47 chr11 50465893 50466279 -71377577 - FordPrefect DNA Tip100 -974 709 311 1 970 515 281 139 30 chr11 50466353 50466555 -71377301 - RMER15 LTR ERVL -16 559 336 1 970 387 0 0 0 chr11 50466951 50466994 -71376862 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 970 567 311 48 6 chr11 50467000 50467165 -71376691 - B4 SINE B4 -116 176 5 1 970 239 324 135 0 chr11 50468079 50468190 -71375666 - MIRb SINE MIR -69 199 74 1 970 268 111 79 8 chr11 50469023 50469150 -71374706 + (TG)n Simple_repeat Simple_repeat 1 136 0 1 970 545 250 175 26 chr11 50469207 50469441 -71374415 + MLT1B LTR MaLR 4 272 -118 1 970 198 0 0 0 chr11 50469588 50469610 -71374246 + (A)n Simple_repeat Simple_repeat 1 22 0 1 970 486 311 11 46 chr11 50470293 50470468 -71373388 + B4A SINE B4 2 170 -122 1 970 330 26 0 0 chr11 50470558 50470597 -71373259 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 970 500 140 11 0 chr11 50471287 50471380 -71372476 + (TTTA)n Simple_repeat Simple_repeat 1 94 0 1 970 564 274 22 7 chr11 50471381 50471517 -71372339 - ID_B1 SINE B4 -9 215 78 1 970 778 247 12 12 chr11 50471848 50472012 -71371844 + B3A SINE B2 1 164 -34 1 970 333 102 0 0 chr11 50472013 50472072 -71371784 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 1 970 721 285 72 58 chr11 50472248 50472677 -71371179 + L1MB7 LINE L1 5742 6176 -8 1 970 255 322 74 8 chr11 50472680 50472802 -71371054 + MER113 DNA MER1_type 76 205 -316 1 970 216 200 0 0 chr11 50472802 50472857 -71370999 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 970 444 280 30 102 chr11 50472857 50473024 -71370832 - RSINE1 SINE B4 0 165 11 1 970 663 67 0 0 chr11 50473027 50473116 -71370740 + (TC)n Simple_repeat Simple_repeat 1 89 0 1 970 228 298 18 0 chr11 50473131 50473188 -71370668 + MER113 DNA MER1_type 238 295 -226 1 970 467 236 172 8 chr11 50474227 50474355 -71369501 + RSINE1 SINE B4 3 151 -14 1 970 23 0 0 0 chr11 50474394 50474417 -71369439 + AT_rich Low_complexity Low_complexity 1 23 0 1 970 447 367 66 48 chr11 50474742 50475074 -71368782 + ORR1E LTR MaLR 1 338 -21 1 970 264 305 23 23 chr11 50475294 50475446 -71368410 - B4A SINE B4 0 165 8 1 970 405 0 0 0 chr11 50476237 50476282 -71367574 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 970 1170 241 91 17 chr11 50476551 50476901 -71366955 - MTEb LTR MaLR -2 377 2 1 970 286 193 193 10 chr11 50477945 50478042 -71365814 + MIR SINE MIR 41 155 -107 1 970 240 344 84 9 chr11 50478104 50478273 -71365583 - MIR SINE MIR -66 202 22 1 970 226 297 111 42 chr11 50478774 50478918 -71364938 - MLT1D LTR MaLR -8 497 344 1 970 255 269 116 81 chr11 50478955 50479153 -71364703 - MLT1D LTR MaLR -267 238 34 1 970 234 143 0 0 chr11 50480109 50480144 -71363712 + B1_Mus1 SINE Alu 1 35 -113 1 970 561 30 0 0 chr11 50480148 50480215 -71363641 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 970 504 0 0 0 chr11 50480215 50480270 -71363586 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 970 281 100 0 0 chr11 50480272 50480312 -71363544 + B1_Mus2 SINE Alu 95 134 -13 1 970 679 228 35 69 chr11 50480328 50480531 -71363325 - B3A SINE B2 -2 196 1 1 970 444 327 11 95 chr11 50480614 50480793 -71363063 + B4A SINE B4 12 175 -117 1 970 662 268 133 27 chr11 50480857 50481045 -71362811 + ID_B1 SINE B4 12 219 -5 1 970 362 376 14 21 chr11 50480922 50481066 -71362790 + B1_Mm SINE Alu 5 147 0 1 970 372 248 48 100 chr11 50484337 50484555 -71359301 - MLT1A1 LTR MaLR -4 404 163 1 970 654 295 169 17 chr11 50485075 50485430 -71358426 - MLT1D LTR MaLR -58 447 39 1 970 374 247 0 0 chr11 50485825 50485902 -71357954 - ID4_ SINE ID 0 83 7 1 970 202 114 29 0 chr11 50486781 50486816 -71357040 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 1 970 433 303 174 29 chr11 50487295 50487709 -71356147 - MLT1D LTR MaLR -4 463 5 1 970 270 347 59 0 chr11 50488838 50488969 -71354887 + MIRm SINE MIR 2 152 -116 1 970 663 304 40 14 chr11 50489471 50489694 -71354162 + B4A SINE B4 2 230 -62 1 970 313 270 37 23 chr11 50490791 50490886 -71352970 + MTEa LTR MaLR 255 369 -10 1 970 516 16 0 0 chr11 50491204 50491265 -71352591 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 1 970 210 302 80 65 chr11 50492064 50492202 -71351654 - MIRc SINE MIR -73 195 56 1 970 406 319 108 6 chr11 50492787 50492945 -71350911 + MER45A DNA Tip100 4 177 -1 1 970 216 0 0 0 chr11 50493383 50493407 -71350449 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1 970 1446 147 0 30 chr11 50493549 50493781 -71350075 + URR1A DNA MER1_type 2 226 0 1 970 1090 106 14 0 chr11 50493891 50494033 -71349823 + B1_Mur4 SINE Alu 2 145 -5 1 970 280 303 54 27 chr11 50495225 50495337 -71348519 - Charlie8 DNA MER1_type -2270 158 44 1 970 180 111 0 0 chr11 50496671 50496698 -71347158 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 1 970 357 24 0 0 chr11 50496711 50496753 -71347103 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 970 616 155 23 11 chr11 50498160 50498336 -71345520 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 1 970 2430 85 3 0 chr11 50498762 50499080 -71344776 - ORR1A2 LTR MaLR -8 319 1 1 970 369 0 0 0 chr11 50499467 50499508 -71344348 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 970 273 245 92 0 chr11 50500109 50500207 -71343649 - L1MB5 LINE L1 -103 6071 5965 1 970 456 353 60 53 chr11 50500948 50501365 -71342491 + L1MEe LINE L1 2070 2474 -3672 2 970 222 37 0 0 chr11 50501475 50501502 -71342354 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 970 403 298 28 96 chr11 50501808 50502057 -71341799 + L1MEe LINE L1 2744 2975 -3171 2 970 980 215 26 0 chr11 50502154 50502349 -71341507 + B3 SINE B2 2 201 -15 4 970 207 204 0 0 chr11 50502351 50502395 -71341461 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 970 546 16 0 0 chr11 50502533 50502596 -71341260 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 970 764 215 136 5 chr11 50502626 50502832 -71341024 - B4 SINE B4 -59 233 1 7 970 200 136 0 64 chr11 50502849 50502865 -71340991 + (CAAA)n Simple_repeat Simple_repeat 2 17 0 8 970 1173 62 7 0 chr11 50502865 50503011 -71340845 + B1_Mus1 SINE Alu 1 147 -1 9 970 200 136 0 64 chr11 50503011 50503041 -71340815 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 970 354 228 167 53 chr11 50503452 50503585 -71340271 - MLT1A LTR MaLR -180 210 49 1 970 1347 250 20 98 chr11 50503829 50504024 -71339832 - MTE2a LTR MaLR -4 375 191 1 970 486 49 0 0 chr11 50504024 50504085 -71339771 + (CTTG)n Simple_repeat Simple_repeat 1 61 0 1 970 1347 250 20 98 chr11 50504085 50504288 -71339568 - MTE2a LTR MaLR -189 190 8 1 970 1405 72 17 0 chr11 50504289 50504470 -71339386 + B2_Mm2 SINE B2 4 187 -8 1 970 230 259 46 69 chr11 50505025 50505112 -71338744 - MIRc SINE MIR -158 110 26 1 970 549 281 40 14 chr11 50505496 50505644 -71338212 + RSINE1 SINE B4 2 153 -12 1 970 253 333 82 72 chr11 50505644 50505690 -71338166 + B3A SINE B2 1 196 -2 1 970 434 65 16 0 chr11 50505691 50505753 -71338103 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 970 1412 225 118 56 chr11 50506994 50507388 -71336468 - MTD LTR MaLR -15 404 1 1 970 261 0 0 0 chr11 50507463 50507492 -71336364 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 970 1069 278 103 2 chr11 50507587 50508041 -71335815 - L1M4b LINE L1 -1958 5042 4543 2 970 574 264 190 43 chr11 50508218 50508776 -71335080 - L1M4b LINE L1 -2884 4116 3477 2 970 1156 205 0 23 chr11 50508802 50509022 -71334834 - B3 SINE B2 -1 215 1 2 970 233 288 12 0 chr11 50509476 50509556 -71334300 - L1M4 LINE L1 -6412 130 50 2 970 1301 265 104 36 chr11 50509728 50510201 -71333655 - MLT1D LTR MaLR 0 505 1 2 970 544 299 98 24 chr11 50510212 50510507 -71333349 - L1M4b LINE L1 -4429 2905 2589 2 970 22 56 0 0 chr11 50510531 50510567 -71333289 + AT_rich Low_complexity Low_complexity 1 36 0 2 970 837 173 91 11 chr11 50510595 50510609 -71333247 - B2_Mm1t SINE B2 -4 189 176 2 970 198 0 0 0 chr11 50510609 50510631 -71333225 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2 970 949 109 18 2 chr11 50510631 50510791 -71333065 - B2_Mm2 SINE B2 -18 175 1 2 970 406 305 149 13 chr11 50510795 50511190 -71332666 - L1M4b LINE L1 -4647 2361 1913 2 970 248 216 19 19 chr11 50511352 50511456 -71332400 + CT-rich Low_complexity Low_complexity 3 106 0 2 970 354 221 26 26 chr11 50511569 50511685 -71332171 - L1M4b LINE L1 -7146 188 73 2 970 1410 229 94 24 chr11 50511931 50512303 -71331553 + MTD LTR MaLR 5 402 -17 2 970 1125 274 56 48 chr11 50512487 50512863 -71330993 - MTE2b LTR MaLR 0 379 1 3 970 931 219 45 25 chr11 50513085 50513286 -71330570 + B3 SINE B2 7 211 -5 3 970 330 244 136 64 chr11 50513436 50513576 -71330280 + B4A SINE B4 141 290 -2 3 970 850 308 31 46 chr11 50513845 50514168 -71329688 - Charlie24 DNA MER1_type -158 2292 1975 3 970 1090 179 117 5 chr11 50514402 50514615 -71329241 + MTD LTR MaLR 183 419 0 3 970 219 103 0 0 chr11 50515054 50515093 -71328763 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 970 793 240 123 41 chr11 50515119 50515436 -71328420 - MLT1A LTR MaLR 0 374 32 3 970 654 211 266 36 chr11 50516347 50516539 -71327317 + B4 SINE B4 42 277 -15 3 970 364 293 111 20 chr11 50516747 50516991 -71326865 - L1MB8 LINE L1 0 6178 5913 3 970 1067 258 122 29 chr11 50517119 50517462 -71326394 + MTE2b LTR MaLR 1 375 -4 3 970 198 285 77 112 chr11 50517535 50517676 -71326180 + L2a LINE L2 3001 3137 -289 4 970 276 30 0 0 chr11 50517676 50517709 -71326147 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 4 970 198 285 77 112 chr11 50517709 50517737 -71326119 + L2a LINE L2 3138 3164 -262 4 970 708 241 52 23 chr11 50517844 50518067 -71325789 + MTEa LTR MaLR 121 376 -3 4 970 227 290 37 9 chr11 50518209 50518317 -71325539 + L1M3 LINE L1 5708 5818 -365 4 970 408 256 22 0 chr11 50518430 50518520 -71325336 + PB1D10 SINE Alu 5 96 -21 4 970 1021 214 48 10 chr11 50518672 50518880 -71324976 - B3 SINE B2 0 216 1 4 970 299 276 38 119 chr11 50518884 50518950 -71324906 + L1MA4 LINE L1 6065 6114 -186 4 970 376 351 0 9 chr11 50518950 50519065 -71324791 - PB1D10 SINE Alu -2 115 2 4 970 299 276 38 119 chr11 50519065 50519183 -71324673 + L1MA4 LINE L1 6115 6234 -66 4 970 303 369 78 23 chr11 50519719 50519977 -71323879 - Charlie24 DNA MER1_type -2013 437 166 3 970 248 276 52 31 chr11 50520044 50520141 -71323715 - MLT1A0 LTR MaLR 0 408 310 4 970 323 359 11 0 chr11 50520198 50520290 -71323566 - MLT1A0 LTR MaLR -193 172 80 4 970 335 212 21 86 chr11 50520527 50520620 -71323236 - B3A SINE B2 -110 88 2 4 970 461 127 13 0 chr11 50520647 50520726 -71323130 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 970 180 0 0 0 chr11 50521113 50521133 -71322723 + (CATCC)n Simple_repeat Simple_repeat 4 23 0 5 970 319 340 110 70 chr11 50522291 50522591 -71321265 - MLT1A LTR MaLR -62 312 1 5 970 541 264 117 39 chr11 50523122 50523327 -71320529 - B4A SINE B4 -71 221 1 5 970 256 312 31 20 chr11 50523922 50524020 -71319836 + MIR SINE MIR 132 230 -32 5 970 597 120 0 0 chr11 50524448 50524540 -71319316 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 5 970 548 313 32 32 chr11 50524616 50524900 -71318956 - B4A SINE B4 -8 284 1 5 970 408 202 24 8 chr11 50525602 50525727 -71318129 + CT-rich Low_complexity Low_complexity 5 131 0 5 970 507 306 37 0 chr11 50525744 50525878 -71317978 - B1F SINE Alu -10 139 1 5 970 239 261 43 0 chr11 50525928 50525997 -71317859 - B4 SINE B4 -217 75 4 5 970 589 222 48 0 chr11 50526000 50526126 -71317730 + B3A SINE B2 10 141 -57 6 970 366 23 0 0 chr11 50526139 50526182 -71317674 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 970 847 176 153 0 chr11 50526296 50526466 -71317390 - B3 SINE B2 -6 210 15 6 970 2209 105 13 3 chr11 50526579 50526894 -71316962 - ORR1A2 LTR MaLR -8 319 2 6 970 328 231 75 68 chr11 50528194 50528330 -71315526 - MIRb SINE MIR -112 156 14 6 970 722 250 134 30 chr11 50529592 50530025 -71313831 - RMER5 LTR ERV1 -51 483 6 6 970 843 263 44 67 chr11 50530141 50530439 -71313417 + B4A SINE B4 2 292 0 6 970 357 242 202 0 chr11 50530516 50530615 -71313241 + ID_B1 SINE B4 86 204 -20 6 970 264 59 0 0 chr11 50530634 50530668 -71313188 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 970 322 328 86 0 chr11 50530856 50530972 -71312884 + Charlie8 DNA MER1_type 377 502 -1926 6 970 348 342 0 7 chr11 50531532 50531685 -71312171 + (TG)n Simple_repeat Simple_repeat 1 152 0 7 970 1866 127 211 21 chr11 50533514 50533845 -71310011 - ORR1B1 LTR MaLR 0 394 1 7 970 285 100 0 0 chr11 50533861 50533911 -71309945 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 970 606 287 117 0 chr11 50534050 50534238 -71309618 + ID_B1 SINE B4 10 219 -5 7 970 200 111 28 0 chr11 50534241 50534277 -71309579 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 7 970 1177 210 66 142 chr11 50537172 50537582 -71306274 - MTE2a LTR MaLR 0 379 1 7 970 465 34 0 0 chr11 50537858 50537917 -71305939 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 970 452 245 128 59 chr11 50538634 50538902 -71304954 + B4 SINE B4 3 281 -11 7 970 209 196 0 19 chr11 50539356 50539408 -71304448 + CT-rich Low_complexity Low_complexity 5 55 0 7 970 517 312 148 50 chr11 50539540 50540316 -71303540 - HAL1 LINE L1 -679 1828 977 7 970 312 27 0 0 chr11 50540965 50541002 -71302854 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 970 430 363 48 51 chr11 50541395 50541729 -71302127 - HAL1 LINE L1 -2167 340 8 7 970 459 0 0 0 chr11 50542023 50542074 -71301782 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 970 4635 163 87 10 chr11 50543309 50544134 -71299722 - RMER19B LTR ERVK -13 889 1 8 970 495 273 102 0 chr11 50545072 50545200 -71298656 + B1_Mur2 SINE Alu 2 142 -7 8 970 216 0 0 0 chr11 50545209 50545233 -71298623 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 8 970 348 264 79 35 chr11 50545326 50545339 -71298517 - B1F SINE Alu -2 147 29 8 970 530 212 30 20 chr11 50545339 50545440 -71298416 - ID_B1 SINE B4 -13 211 110 8 970 362 294 0 38 chr11 50545641 50545747 -71298109 - MLT1A0 LTR MaLR -1 364 263 8 970 324 0 0 0 chr11 50546651 50546687 -71297169 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 970 558 241 219 12 chr11 50547325 50547640 -71296216 + MTD LTR MaLR 1 404 -15 8 970 394 302 38 65 chr11 50548019 50548203 -71295653 - MER102b DNA MER1_type -158 183 5 9 970 351 0 0 0 chr11 50548629 50548668 -71295188 + (TA)n Simple_repeat Simple_repeat 2 40 0 9 970 360 0 0 0 chr11 50548683 50548723 -71295133 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 970 408 40 0 0 chr11 50548786 50548836 -71295020 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 970 2873 32 6 0 chr11 50548839 50549182 -71294674 - MTA_Mm LTR MaLR -51 345 1 9 970 435 173 0 0 chr11 50549183 50549264 -71294592 + (TA)n Simple_repeat Simple_repeat 1 81 0 9 970 343 267 35 29 chr11 50549276 50549350 -71294506 + (TATG)n Simple_repeat Simple_repeat 4 78 0 9 970 422 36 18 0 chr11 50549350 50549406 -71294450 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 9 970 343 267 35 29 chr11 50549406 50549462 -71294394 + (TATG)n Simple_repeat Simple_repeat 3 59 0 9 970 204 40 0 0 chr11 50549462 50549487 -71294369 + (TA)n Simple_repeat Simple_repeat 2 26 0 9 970 343 267 35 29 chr11 50549487 50549525 -71294331 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1 970 348 161 0 0 chr11 50549533 50549595 -71294261 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 970 2050 197 11 11 chr11 50551042 50551407 -71292449 + MTE2b LTR MaLR 1 365 -14 1 970 234 0 0 0 chr11 50552283 50552309 -71291547 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 1 970 1112 69 61 18 chr11 50552325 50552488 -71291368 + B2_Mm2 SINE B2 2 171 -24 1 970 348 235 26 128 chr11 50553417 50553573 -71290283 + MER3 DNA MER1_type 14 153 -56 1 970 631 231 243 21 chr11 50553591 50553830 -71290026 + B4A SINE B4 1 292 0 1 970 204 217 0 0 chr11 50553830 50553876 -71289980 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 970 240 250 25 100 chr11 50554030 50554110 -71289746 + MT2B2 LTR ERVL 168 241 -343 1 970 413 214 94 12 chr11 50554046 50554131 -71289725 + PB1D10 SINE Alu 21 112 -5 1 970 743 158 0 0 chr11 50554144 50554258 -71289598 + B1_Mus2 SINE Alu 34 147 0 1 970 384 342 48 16 chr11 50554376 50554685 -71289171 - L1MB3 LINE L1 -39 6144 5826 1 970 243 61 0 0 chr11 50554688 50554721 -71289135 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 970 504 86 0 0 chr11 50554783 50554853 -71289003 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 1 970 336 206 0 42 chr11 50554862 50554933 -71288923 - PB1D10 SINE Alu -39 78 11 1 970 1201 269 51 0 chr11 50554933 50555286 -71288570 - L1MB3 LINE L1 -358 5825 5455 1 970 225 170 113 0 chr11 50555584 50555637 -71288219 + ID SINE ID 2 60 -164 1 970 470 17 17 0 chr11 50555768 50555827 -71288029 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 970 577 212 68 7 chr11 50555827 50555974 -71287882 - RMER15 LTR ERVL -42 533 378 1 970 421 270 16 50 chr11 50555957 50556078 -71287778 - ORR1E LTR MaLR -242 117 1 1 970 447 68 0 0 chr11 50556782 50556841 -71287015 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 970 405 0 0 0 chr11 50556841 50556885 -71286971 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 970 628 225 8 8 chr11 50556905 50557035 -71286821 - RSINE1 SINE B4 -22 143 14 1 970 1686 269 83 25 chr11 50557086 50557650 -71286206 - RCHARR1 DNA MER1_type -377 597 1 1 970 297 0 0 0 chr11 50559813 50559846 -71284010 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 970 222 279 49 0 chr11 50560555 50560616 -71283240 - B1F SINE Alu 0 149 86 1 970 280 246 0 0 chr11 50560562 50560619 -71283237 - ID_B1 SINE B4 -7 217 161 1 970 1000 257 106 44 chr11 50561085 50561155 -71282701 + BGLII_B LTR ERVK 5 70 -371 1 970 432 0 0 0 chr11 50561155 50561203 -71282653 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 970 1000 257 106 44 chr11 50561203 50561518 -71282338 + BGLII_B LTR ERVK 71 414 -27 1 970 215 167 21 0 chr11 50561524 50561572 -71282284 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1 970 690 196 50 21 chr11 50562625 50562766 -71281090 - B1_Mur4 SINE Alu 0 150 6 1 970 930 90 37 0 chr11 50565384 50565518 -71278338 + B2_Mm2 SINE B2 1 139 -56 1 970 324 0 0 0 chr11 50565548 50565584 -71278272 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 970 296 250 71 124 chr11 50566294 50566504 -71277352 - ORR1D2 LTR MaLR -3 367 169 1 970 240 111 0 0 chr11 50566595 50566640 -71277216 + (CAACC)n Simple_repeat Simple_repeat 4 48 0 1 970 278 351 65 12 chr11 50566883 50567053 -71276803 - MLT1A LTR MaLR -195 179 1 1 970 204 122 0 0 chr11 50567702 50567743 -71276113 + (T)n Simple_repeat Simple_repeat 1 41 0 1 970 531 0 0 0 chr11 50569110 50569169 -71274687 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 970 874 66 107 0 chr11 50569169 50569291 -71274565 - B1_Mus1 SINE Alu -13 135 1 1 970 296 336 28 0 chr11 50569551 50569658 -71274198 - MER2 DNA MER2_type -70 275 166 1 970 3284 32 14 50 chr11 50570460 50570883 -71272973 - L1Md_F2 LINE L1 -12 6570 6163 1 970 405 298 65 127 chr11 50571023 50571315 -71272541 - MER74A LTR ERVL -189 369 96 1 970 369 254 89 48 chr11 50571533 50571657 -71272199 - MTEb LTR MaLR 0 379 251 1 970 364 281 76 30 chr11 50572012 50572144 -71271712 - B1_Mus1 SINE Alu -1 147 10 1 970 1026 222 0 15 chr11 50572026 50572227 -71271629 - ID_B1 SINE B4 -20 204 7 1 970 180 0 0 0 chr11 50572426 50572446 -71271410 + (G)n Simple_repeat Simple_repeat 1 20 0 1 970 1435 247 97 8 chr11 50572512 50572883 -71270973 + MTD LTR MaLR 5 408 -11 1 970 258 0 47 23 chr11 50573173 50573216 -71270640 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 970 1310 27 0 0 chr11 50573216 50573363 -71270493 - B1_Mus1 SINE Alu 0 148 2 1 970 596 181 43 18 chr11 50573532 50573695 -71270161 - Lx9 LINE L1 -1 7643 7477 1 970 406 308 41 0 chr11 50573727 50573899 -71269957 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 1 970 2272 191 51 6 chr11 50573920 50574410 -71269446 - Lx9 LINE L1 -127 7517 7006 1 970 712 147 7 7 chr11 50574963 50575100 -71268756 + GA-rich Low_complexity Low_complexity 1 137 0 1 970 745 238 119 45 chr11 50575229 50575431 -71268425 + ID_B1 SINE B4 1 217 -7 1 970 229 347 30 20 chr11 50575964 50576064 -71267792 + MLT1A1 LTR MaLR 305 405 -3 1 970 849 295 19 37 chr11 50576751 50577019 -71266837 + B4A SINE B4 30 292 0 1 970 689 242 90 11 chr11 50577451 50577639 -71266217 + B3 SINE B2 3 205 -11 1 970 284 280 97 48 chr11 50578384 50578549 -71265307 - ORR1E LTR MaLR -165 194 22 1 970 935 230 296 20 chr11 50579371 50579668 -71264188 + MTEa LTR MaLR 1 379 0 1 970 585 0 0 0 chr11 50580024 50580089 -71263767 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 970 361 315 33 16 chr11 50580722 50580883 -71262973 - MLT1A1 LTR MaLR -1 407 232 1 970 317 331 102 0 chr11 50580898 50581025 -71262831 - MLT1A1 LTR MaLR -221 144 5 1 970 186 294 36 87 chr11 50581216 50581354 -71262502 + MIRc SINE MIR 3 133 -135 1 970 180 0 0 0 chr11 50581446 50581466 -71262390 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 1 970 184 279 73 0 chr11 50581741 50581809 -71262047 - MIRc SINE MIR -110 158 86 1 970 423 0 0 0 chr11 50582024 50582071 -71261785 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 970 1025 272 89 3 chr11 50582336 50582638 -71261218 - MTE2a LTR MaLR -51 328 1 1 970 194 274 83 0 chr11 50583335 50583419 -71260437 + MIR SINE MIR 122 212 -50 1 970 329 175 0 3 chr11 50583847 50583920 -71259936 - B3A SINE B2 -123 72 1 1 970 874 325 52 3 chr11 50584642 50584969 -71258887 + MER2 DNA MER2_type 1 343 -2 1 970 469 286 76 15 chr11 50585136 50585352 -71258504 - MamGypLTR1b LTR Gypsy -578 235 4 1 970 369 58 0 0 chr11 50585662 50585714 -71258142 + (T)n Simple_repeat Simple_repeat 1 52 0 1 970 225 65 0 0 chr11 50586674 50586705 -71257151 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 970 320 280 83 53 chr11 50587214 50587346 -71256510 + L1M5 LINE L1 2476 2611 -3535 1 970 232 257 13 67 chr11 50587347 50587422 -71256434 + B2_Mm1t SINE B2 2 72 -121 1 970 388 342 0 0 chr11 50587358 50587475 -71256381 + RSINE1 SINE B4 9 125 -40 1 970 252 59 0 0 chr11 50587496 50587530 -71256326 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 970 2370 113 3 12 chr11 50587587 50587917 -71255939 - ORR1A2 LTR MaLR 0 327 1 1 970 225 332 70 35 chr11 50588061 50588174 -71255682 + L1M5 LINE L1 2855 2974 -3172 1 970 941 204 6 0 chr11 50588174 50588336 -71255520 + RSINE1 SINE B4 3 165 0 1 970 225 332 70 35 chr11 50588336 50588506 -71255350 + L1M5 LINE L1 2975 3148 -2998 1 970 180 287 176 10 chr11 50589139 50589241 -71254615 - MIRb SINE MIR -66 202 84 1 970 746 246 77 0 chr11 50590882 50591077 -71252779 - ID_B1 SINE B4 -9 215 6 1 970 227 359 155 16 chr11 50591311 50591498 -71252358 - MLT1A LTR MaLR -288 307 95 1 970 381 202 24 12 chr11 50591548 50591633 -71252223 - MLT1A LTR MaLR -283 91 6 1 970 492 257 0 42 chr11 50591875 50591993 -71251863 - RSINE1 SINE B4 -48 117 5 1 970 312 325 9 0 chr11 50592012 50592126 -71251730 + (CA)n Simple_repeat Simple_repeat 2 116 0 1 970 21 36 0 0 chr11 50592126 50592154 -71251702 + AT_rich Low_complexity Low_complexity 1 28 0 1 970 519 197 54 54 chr11 50593047 50593176 -71250680 - RSINE1 SINE B4 -33 132 4 1 971 1220 67 0 6 chr11 50594632 50594813 -71249043 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 971 965 139 14 7 chr11 50594813 50594958 -71248898 - B1_Mur3 SINE Alu -3 146 1 1 971 1159 248 46 149 chr11 50595763 50596180 -71247676 - MTE2a LTR MaLR -5 374 1 1 971 634 306 132 40 chr11 50596314 50596445 -71247411 - MER2 DNA MER2_type -47 298 148 1 971 1262 186 131 101 chr11 50596445 50596803 -71247053 - ORR1D1 LTR MaLR -4 370 2 1 971 634 306 132 40 chr11 50596803 50596943 -71246913 - MER2 DNA MER2_type -198 147 2 1 971 1051 308 41 13 chr11 50597368 50597760 -71246096 - L1MA4 LINE L1 -365 5935 5533 1 971 334 239 52 104 chr11 50598292 50598446 -71245410 - MTE2a LTR MaLR -203 176 31 1 971 213 250 21 0 chr11 50598441 50598489 -71245367 - B4 SINE B4 -212 80 32 1 971 436 280 31 31 chr11 50601418 50601547 -71242309 + B1F2 SINE Alu 3 131 -18 1 971 503 289 87 22 chr11 50601590 50601774 -71242082 + B3A SINE B2 2 197 -1 1 971 341 246 288 15 chr11 50601920 50602052 -71241804 - Tigger5 DNA MER2_type -2235 171 4 1 971 988 245 18 157 chr11 50603000 50603256 -71240600 - RLTR11B LTR ERVK -20 433 207 1 971 627 14 0 0 chr11 50603256 50603328 -71240528 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 971 988 245 18 157 chr11 50603328 50603574 -71240282 - RLTR11B LTR ERVK -247 206 1 1 971 748 309 10 47 chr11 50603734 50604033 -71239823 + B4A SINE B4 5 292 0 1 971 240 323 50 20 chr11 50604057 50604158 -71239698 + L2 LINE L2 2807 2910 -509 1 971 285 256 40 92 chr11 50604209 50604376 -71239480 - MTEb LTR MaLR -18 361 202 1 971 411 261 75 0 chr11 50605066 50605200 -71238656 + B1F SINE Alu 6 149 0 1 971 373 322 35 136 chr11 50606584 50606782 -71237074 - MER77 LTR ERVL -415 192 15 2 971 423 0 0 0 chr11 50606782 50606829 -71237027 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 971 327 132 54 11 chr11 50607347 50607439 -71236417 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 971 423 145 45 23 chr11 50607474 50607650 -71236206 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 971 269 233 116 65 chr11 50607651 50607789 -71236067 - L1MA4 LINE L1 -368 5932 5788 2 971 462 327 78 22 chr11 50607789 50608058 -71235798 + B4A SINE B4 1 284 -8 2 971 584 265 114 10 chr11 50608114 50608316 -71235540 - L1MA4 LINE L1 -498 5793 5571 2 971 212 242 114 57 chr11 50609399 50609504 -71234352 - MIR SINE MIR -53 209 99 2 971 354 107 0 0 chr11 50609801 50609857 -71233999 + (CGTG)n Simple_repeat Simple_repeat 4 59 0 2 971 188 67 33 0 chr11 50610873 50610903 -71232953 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 2 971 195 129 0 0 chr11 50611693 50611724 -71232132 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 2 971 360 0 0 0 chr11 50612342 50612382 -71231474 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 971 1467 73 0 20 chr11 50613265 50613461 -71230395 + B2_Mm2 SINE B2 1 192 -3 2 971 270 81 0 0 chr11 50613461 50613498 -71230358 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 2 971 240 228 0 0 chr11 50613498 50613555 -71230301 + A-rich Low_complexity Low_complexity 1 57 0 2 971 229 175 0 0 chr11 50613634 50613674 -71230182 - AmnSINE1 SINE SINE -488 87 48 2 971 1410 82 5 20 chr11 50613674 50613872 -71229984 - B2_Mm2 SINE B2 0 195 1 2 971 662 183 35 0 chr11 50613965 50614080 -71229776 + PB1D9 SINE Alu 2 120 0 2 971 615 335 67 14 chr11 50614585 50614794 -71229062 - MER58A DNA MER1_type -3 221 2 2 971 214 263 18 0 chr11 50615948 50616005 -71227851 - L3 LINE CR1 -2279 2210 2153 2 971 772 70 0 0 chr11 50617749 50617849 -71226007 + B1_Mus2 SINE Alu 48 147 0 2 971 3852 51 15 2 chr11 50619042 50619511 -71224345 - MT2C_Mm LTR ERVL 0 475 1 2 971 216 0 0 0 chr11 50619851 50619875 -71223981 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 971 267 328 56 70 chr11 50621253 50621466 -71222390 - ZP3AR Satellite Satellite 0 212 3 2 971 389 284 126 34 chr11 50621430 50621605 -71222251 - MER53 DNA hAT 0 193 3 2 971 686 225 63 42 chr11 50622181 50622371 -71221485 - B3A SINE B2 -3 195 2 2 971 593 227 0 9 chr11 50622379 50622490 -71221366 - B1_Mur1 SINE Alu -37 112 3 2 971 1243 242 58 13 chr11 50622638 50622948 -71220908 + MTE2b LTR MaLR 48 371 -8 2 971 475 191 71 0 chr11 50623152 50623236 -71220620 + 5S rRNA rRNA 1 90 -31 2 971 296 283 94 42 chr11 50623236 50623248 -71220608 + AmnSINE1 SINE SINE 1 101 -474 2 971 542 256 124 14 chr11 50623377 50623587 -71220269 + L1MC LINE L1 2687 2919 -3227 2 971 295 264 69 0 chr11 50623635 50623707 -71220149 - RSINE1 SINE B4 -11 154 78 2 971 416 295 180 27 chr11 50623708 50623969 -71219887 + MT2A LTR ERVL 255 555 -1 2 971 249 33 0 0 chr11 50624062 50624092 -71219764 + (T)n Simple_repeat Simple_repeat 1 30 0 2 971 278 262 206 0 chr11 50624366 50624473 -71219383 - L1MD2 LINE L1 -6377 170 42 2 971 274 325 0 0 chr11 50625587 50625667 -71218189 - L1MC4 LINE L1 -1208 6834 6755 2 971 365 268 0 0 chr11 50625969 50626051 -71217805 + ID4_ SINE ID 2 83 0 2 971 788 197 21 0 chr11 50627080 50627222 -71216634 + B1F SINE Alu 3 147 -2 2 971 578 144 78 23 chr11 50627254 50627382 -71216474 + Lx9 LINE L1 7504 7638 -6 2 971 419 273 42 42 chr11 50628233 50629111 -71214745 - MMSAT4 Satellite Satellite 0 878 1 2 971 26 0 0 0 chr11 50630053 50630079 -71213777 + AT_rich Low_complexity Low_complexity 1 26 0 2 971 369 293 18 41 chr11 50631304 50631475 -71212381 - MurSatRep1 Unknown Unknown -1392 745 579 2 971 1323 82 11 26 chr11 50631652 50631841 -71212015 + B2_Mm2 SINE B2 1 186 -9 2 971 1280 113 11 0 chr11 50632033 50632218 -71211638 + B2_Mm1t SINE B2 1 187 -6 2 971 1633 47 0 0 chr11 50632221 50632412 -71211444 + B2_Mm1a SINE B2 1 191 -2 2 971 204 405 23 0 chr11 50632413 50632544 -71211312 - MIR SINE MIR -32 230 97 2 971 601 269 47 27 chr11 50632545 50632694 -71211162 + RSINE1 SINE B4 4 155 -10 2 971 215 384 0 0 chr11 50632706 50632792 -71211064 - MIR SINE MIR -146 116 31 2 971 644 154 154 0 chr11 50632888 50633005 -71210851 + B1_Mm SINE Alu 1 135 -12 2 971 1349 91 32 0 chr11 50633019 50633206 -71210650 - B2_Mm1a SINE B2 0 193 1 2 971 414 0 0 0 chr11 50633219 50633265 -71210591 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 2 971 1137 71 7 0 chr11 50633350 50633491 -71210365 - B1_Mus1 SINE Alu -5 143 2 2 971 621 266 95 42 chr11 50633808 50634071 -71209785 + MLT1D LTR MaLR 214 490 -15 2 971 180 0 0 0 chr11 50634075 50634095 -71209761 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 971 324 289 0 0 chr11 50634454 50634537 -71209319 - ID4 SINE ID 0 83 1 2 971 289 291 47 0 chr11 50634561 50634647 -71209209 + B4 SINE B4 2 91 -201 2 971 697 261 115 106 chr11 50634691 50635039 -71208817 + ORR1E LTR MaLR 7 357 -2 2 971 496 305 142 23 chr11 50635386 50635740 -71208116 - L1MEf LINE L1 -4524 2109 1703 2 971 374 255 83 144 chr11 50635747 50636059 -71207797 + MER33 DNA MER1_type 8 300 -24 2 971 1272 20 7 0 chr11 50636097 50636243 -71207613 - B1_Mus1 SINE Alu 0 148 2 2 971 29 0 0 0 chr11 50636356 50636385 -71207471 + AT_rich Low_complexity Low_complexity 1 29 0 2 971 856 245 124 0 chr11 50636433 50636682 -71207174 - B4A SINE B4 -7 285 6 2 971 1163 135 125 0 chr11 50636786 50636986 -71206870 + URR1A DNA MER1_type 1 225 -1 2 971 244 376 43 0 chr11 50637039 50637132 -71206724 + MLT1G1 LTR MaLR 1 97 -482 2 971 515 140 30 0 chr11 50637160 50637252 -71206604 - ORR1D2 LTR MaLR 0 359 262 2 971 207 0 0 0 chr11 50637530 50637553 -71206303 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 971 389 305 39 83 chr11 50637771 50638000 -71205856 + RMER2 LTR ERV1 349 567 0 2 971 1279 139 34 5 chr11 50638260 50638469 -71205387 + B3 SINE B2 1 215 -1 2 971 2067 139 18 0 chr11 50638812 50639149 -71204707 + RLTR15 LTR ERVK 17 359 0 2 971 200 59 38 38 chr11 50639431 50639484 -71204372 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 2 971 29 0 0 0 chr11 50639489 50639518 -71204338 + AT_rich Low_complexity Low_complexity 1 29 0 2 971 361 175 25 12 chr11 50639518 50639599 -71204257 + RLTR15 LTR ERVK 61 142 -217 2 971 583 230 96 30 chr11 50640100 50640297 -71203559 + B3 SINE B2 1 210 -6 2 971 313 333 102 0 chr11 50640487 50640595 -71203261 + MER2 DNA MER2_type 205 323 -22 2 971 228 232 109 41 chr11 50641433 50641527 -71202329 + B1F1 SINE Alu 53 149 0 2 971 5184 41 0 0 chr11 50641580 50642185 -71201671 - L1Md_T LINE L1 -1 6581 5977 2 971 2823 19 0 0 chr11 50642185 50642504 -71201352 + L1Md_T LINE L1 5636 5954 -628 2 971 770 280 45 62 chr11 50642856 50643210 -71200646 + Lx8 LINE L1 6198 6545 -928 2 971 485 296 121 10 chr11 50643222 50643420 -71200436 + RMER15-int LTR ERVL 4549 4768 -231 2 971 505 358 34 0 chr11 50643439 50643587 -71200269 - B3A SINE B2 -10 188 36 2 971 1387 210 55 114 chr11 50643594 50644067 -71199789 - RMER4A LTR ERVK -5 461 17 2 971 1093 89 0 16 chr11 50644483 50644666 -71199190 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 971 1085 30 105 0 chr11 50645370 50645503 -71198353 + B1_Mm SINE Alu 1 147 0 2 971 367 269 39 41 chr11 50646104 50646397 -71197459 - MMSAT4 Satellite Satellite -16 292 1 2 971 375 288 29 29 chr11 50646429 50646730 -71197126 - MMSAT4 Satellite Satellite -5 301 1 2 971 238 321 57 64 chr11 50646674 50646814 -71197042 - MurSatRep1 Unknown Unknown -260 1877 1739 2 971 387 282 33 33 chr11 50646765 50647075 -71196781 - MMSAT4 Satellite Satellite -5 310 1 2 971 711 183 0 0 chr11 50647683 50647858 -71195998 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 971 759 175 0 0 chr11 50647871 50648118 -71195738 + (TG)n Simple_repeat Simple_repeat 1 247 0 2 971 318 118 20 0 chr11 50648124 50648175 -71195681 - HAL1-3A_ME LINE L1 -830 2028 1977 2 971 453 115 0 0 chr11 50648177 50648255 -71195601 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 971 240 296 217 0 chr11 50648773 50648888 -71194968 + RSINE1 SINE B4 3 142 -23 2 971 2014 199 132 12 chr11 50649719 50650214 -71193642 + RLTR40 LTR ERVK 7 561 -256 2 971 342 159 16 0 chr11 50650214 50650277 -71193579 + RLTR20B1 LTR ERVK 1 64 -496 2 971 907 266 70 104 chr11 50650255 50650514 -71193342 + RLTR20B1 LTR ERVK 175 419 -144 2 971 1274 41 0 0 chr11 50650514 50650661 -71193195 + B1_Mus1 SINE Alu 1 147 -1 2 971 907 266 70 104 chr11 50650661 50650707 -71193149 + RLTR20B1 LTR ERVK 420 468 -95 2 971 192 40 0 0 chr11 50650707 50650732 -71193124 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2 971 907 266 70 104 chr11 50650732 50650828 -71193028 + RLTR20B1 LTR ERVK 469 562 -1 2 971 1112 192 38 49 chr11 50650828 50651089 -71192767 + RLTR40 LTR ERVK 554 811 -6 2 971 337 232 31 31 chr11 50651922 50652020 -71191836 - MurSatRep1 Unknown Unknown -1409 728 631 2 971 2566 116 39 15 chr11 50652230 50652641 -71191215 - MTC LTR MaLR 0 421 1 2 971 525 16 0 0 chr11 50653077 50653139 -71190717 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 971 657 259 6 58 chr11 50653143 50653315 -71190541 - B4 SINE B4 -125 167 5 2 971 259 265 157 15 chr11 50655670 50655804 -71188052 + L1MC4 LINE L1 6850 7002 -1040 2 971 560 232 91 5 chr11 50655997 50656209 -71187647 - L1M5 LINE L1 -2097 4049 3814 2 971 29 0 0 0 chr11 50656337 50656366 -71187490 + AT_rich Low_complexity Low_complexity 1 29 0 2 971 2278 140 5 42 chr11 50656563 50656989 -71186867 - RMER17C LTR ERVK 0 410 1 2 971 749 252 44 82 chr11 50657445 50657588 -71186268 + L1M4 LINE L1 4923 5051 -1095 2 971 1629 169 123 78 chr11 50657588 50657985 -71185871 - MTD LTR MaLR 0 419 5 2 971 749 252 44 82 chr11 50657985 50658182 -71185674 + L1M4 LINE L1 5052 5250 -896 2 971 808 264 46 97 chr11 50658211 50658520 -71185336 + RMER1B Other Other 46 525 -541 3 971 378 0 0 0 chr11 50658520 50658562 -71185294 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 971 1893 239 30 23 chr11 50658562 50659246 -71184610 + RMER1A Other Other 1 455 -575 3 971 4392 179 174 14 chr11 50659284 50660051 -71183805 + RMER1A Other Other 1 907 -123 3 971 335 23 23 0 chr11 50660051 50660095 -71183761 + (TGG)n Simple_repeat Simple_repeat 1 45 0 3 971 306 0 0 0 chr11 50660096 50660130 -71183726 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 971 4392 179 174 14 chr11 50660130 50660244 -71183612 + RMER1A Other Other 908 1024 -6 3 971 1164 61 0 51 chr11 50660255 50660394 -71183462 + B1_Mus1 SINE Alu 1 139 -9 3 971 245 29 29 0 chr11 50660394 50660428 -71183428 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 971 1164 61 0 51 chr11 50660428 50660444 -71183412 + B1_Mus1 SINE Alu 140 148 0 3 971 1622 245 33 14 chr11 50660999 50661363 -71182493 + MTEa LTR MaLR 2 372 -7 3 971 426 94 0 0 chr11 50661632 50661696 -71182160 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 971 472 239 0 0 chr11 50662495 50662580 -71181276 + RSINE1 SINE B4 6 90 -75 3 971 765 181 57 51 chr11 50662580 50662755 -71181101 - RMER10B LTR ERVL 0 398 223 3 971 1282 140 77 0 chr11 50663225 50663447 -71180409 - RMER10B LTR ERVL -157 241 3 3 971 504 0 0 0 chr11 50663491 50663547 -71180309 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 971 215 238 0 45 chr11 50665874 50665940 -71177916 + C-rich Low_complexity Low_complexity 5 67 0 3 971 1239 120 44 29 chr11 50667065 50667271 -71176585 - URR1B DNA MER1_type -15 210 2 3 971 325 260 108 47 chr11 50668033 50668162 -71175694 - MLT1A1 LTR MaLR -4 404 268 3 971 355 169 137 16 chr11 50668364 50668473 -71175383 - B1_Mur2 SINE Alu 0 149 1 3 971 1005 199 107 37 chr11 50668619 50668891 -71174965 + B4A SINE B4 2 292 0 3 971 309 245 10 41 chr11 50668891 50668978 -71174878 - L1MC4a LINE L1 -1195 6687 6603 3 971 222 302 0 0 chr11 50668996 50669049 -71174807 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 971 226 244 0 0 chr11 50670119 50670164 -71173692 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 971 708 238 45 45 chr11 50670178 50670380 -71173476 - B4A SINE B4 -3 289 88 3 971 2095 183 32 129 chr11 50671420 50671814 -71172042 - RLTR31_Mm LTR ERVK 0 561 226 3 971 1179 69 0 0 chr11 50671814 50671958 -71171898 - B1_Mus1 SINE Alu 0 148 5 3 971 2095 183 32 129 chr11 50671958 50672184 -71171672 - RLTR31_Mm LTR ERVK -336 225 1 3 971 621 199 225 52 chr11 50672292 50672541 -71171315 - B4A SINE B4 0 292 1 3 971 779 241 48 16 chr11 50673699 50673885 -71169971 + ID_B1 SINE B4 1 192 -32 3 971 414 216 20 40 chr11 50673881 50673982 -71169874 + PB1D9 SINE Alu 9 107 -13 3 971 180 0 0 0 chr11 50673982 50674002 -71169854 + (T)n Simple_repeat Simple_repeat 1 20 0 3 971 247 221 40 93 chr11 50674078 50674093 -71169763 + B4A SINE B4 80 90 -202 3 971 450 214 40 10 chr11 50674093 50674192 -71169664 + PB1D9 SINE Alu 4 105 -15 3 971 870 154 14 0 chr11 50674940 50675083 -71168773 - B1_Mur1 SINE Alu 0 149 5 3 971 365 176 231 11 chr11 50675457 50675574 -71168282 - MTD LTR MaLR -15 404 243 3 971 200 241 55 18 chr11 50675632 50675687 -71168169 - MER91A DNA Tip100 -112 84 28 3 971 387 0 0 0 chr11 50677274 50677317 -71166539 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 971 594 283 77 19 chr11 50677319 50677474 -71166382 - B3A SINE B2 -34 164 1 3 971 308 228 254 24 chr11 50677513 50677639 -71166217 - RSINE1 SINE B4 0 165 11 3 971 588 172 0 0 chr11 50677804 50677920 -71165936 + GA-rich Low_complexity Low_complexity 1 116 0 3 971 894 167 0 0 chr11 50678937 50679069 -71164787 - B1_Mur2 SINE Alu -17 132 1 3 971 225 0 0 0 chr11 50679199 50679224 -71164632 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 3 971 1128 124 0 0 chr11 50679770 50679948 -71163908 + (TTC)n Simple_repeat Simple_repeat 3 180 0 3 971 1204 61 0 0 chr11 50681010 50681157 -71162699 + B1_Mus1 SINE Alu 2 148 0 3 971 668 214 21 35 chr11 50681265 50681410 -71162446 + ID_B1 SINE B4 82 224 0 3 971 388 261 26 17 chr11 50681578 50681695 -71162161 + B3 SINE B2 99 216 0 3 971 526 246 20 36 chr11 50681749 50681920 -71161936 - B3A SINE B2 -19 174 3 3 971 1292 89 0 3 chr11 50682566 50682848 -71161008 + (TTC)n Simple_repeat Simple_repeat 1 281 0 3 971 612 188 26 18 chr11 50682848 50682962 -71160894 - PB1D9 SINE Alu -5 115 1 3 971 3288 168 124 7 chr11 50682968 50683587 -71160269 + RLTR17 LTR ERVK 1 692 0 3 971 518 252 37 0 chr11 50684045 50684152 -71159704 + B1F SINE Alu 35 145 -4 3 971 1337 74 0 43 chr11 50685990 50686151 -71157705 + B2_Mm2 SINE B2 2 160 -35 3 971 396 0 0 0 chr11 50686151 50686195 -71157661 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 971 1337 74 0 43 chr11 50686195 50686217 -71157639 + B2_Mm2 SINE B2 161 177 -18 3 971 440 281 23 23 chr11 50686554 50687280 -71156576 - MMSAT4 Satellite Satellite 0 726 1 3 971 517 239 0 0 chr11 50688101 50688189 -71155667 + B1F SINE Alu 13 100 -49 3 971 939 247 5 34 chr11 50688192 50688397 -71155459 + B3 SINE B2 1 199 -17 3 971 294 143 0 0 chr11 50688400 50688449 -71155407 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 971 286 161 81 0 chr11 50688495 50688557 -71155299 + Lx7 LINE L1 7614 7680 -16 3 971 2105 227 18 122 chr11 50688571 50689196 -71154660 + RMER19C LTR ERVK 1 556 -55 3 971 859 218 29 59 chr11 50689196 50689493 -71154363 - RMER17C LTR ERVK 0 410 119 3 971 1179 112 0 0 chr11 50689493 50689672 -71154184 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 971 859 218 29 59 chr11 50689672 50689683 -71154173 - RMER17C LTR ERVK -292 118 111 3 971 1009 118 12 0 chr11 50689683 50689852 -71154004 + (GGA)n Simple_repeat Simple_repeat 3 173 0 3 971 859 250 15 52 chr11 50689852 50690040 -71153816 - RMER17C LTR ERVK -228 182 2 3 971 263 190 34 112 chr11 50690040 50690097 -71153759 + RMER19C LTR ERVK 853 902 0 3 971 270 264 178 12 chr11 50690260 50690429 -71153427 + L1MEg LINE L1 1326 1522 -4720 3 971 6351 112 55 50 chr11 50690579 50691606 -71152250 + RLTR13D4 LTR ERVK 1 1033 0 3 971 289 263 69 17 chr11 50691619 50691735 -71152121 + L1MEg LINE L1 2865 2986 -3160 3 971 468 298 62 45 chr11 50692093 50692272 -71151584 - B4A SINE B4 -101 191 10 3 971 2090 127 17 40 chr11 50692292 50692638 -71151218 + ORR1B1 LTR MaLR 1 338 -56 3 971 384 270 0 0 chr11 50692657 50692731 -71151125 + ID4_ SINE ID 2 75 -8 3 971 653 261 35 45 chr11 50693009 50693210 -71150646 + B4A SINE B4 27 225 -67 3 971 682 309 60 13 chr11 50693700 50693998 -71149858 + L1_Rod LINE L1 5426 5737 -110 3 971 2048 184 88 34 chr11 50694059 50694527 -71149329 + RLTR11A LTR ERVK 36 528 0 3 971 865 131 28 21 chr11 50694584 50694725 -71149131 + B1_Mus1 SINE Alu 5 146 -2 3 971 270 159 175 0 chr11 50695410 50695473 -71148383 - ID4_ SINE ID 0 83 10 3 971 1223 100 16 16 chr11 50696101 50696284 -71147572 - B2_Mm2 SINE B2 -8 187 5 3 971 694 257 71 5 chr11 50696309 50696493 -71147363 - B3A SINE B2 0 198 3 3 971 359 295 37 37 chr11 50697181 50697315 -71146541 - MurSatRep1 Unknown Unknown -1393 744 611 3 971 363 60 0 0 chr11 50698057 50698107 -71145749 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 971 369 245 58 10 chr11 50699223 50699326 -71144530 - PB1D10 SINE Alu -9 108 1 3 971 313 320 0 0 chr11 50699364 50699439 -71144417 - ID4_ SINE ID -6 77 3 3 971 477 0 0 0 chr11 50700398 50700451 -71143405 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 971 502 253 63 143 chr11 50702478 50702907 -71140949 + RLTR12B LTR ERVK 5 261 -267 3 971 220 175 0 24 chr11 50703530 50703571 -71140285 + ID SINE ID 8 47 -177 3 971 343 236 190 54 chr11 50704410 50704594 -71139262 - RLTR23 LTR ERV1 0 430 222 3 971 3699 129 113 29 chr11 50705262 50705958 -71137898 - RMER6A LTR ERVK -1 755 1 3 971 1495 221 148 13 chr11 50706007 50706379 -71137477 + RMER21B LTR ERV1 18 439 -508 3 971 225 0 0 0 chr11 50706386 50706411 -71137445 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 971 347 321 114 85 chr11 50706489 50706761 -71137095 + RLTR25A LTR ERVK 35 314 -789 3 971 262 329 50 67 chr11 50707384 50707563 -71136293 + RLTR25A LTR ERVK 853 1028 0 3 971 1570 215 76 81 chr11 50707563 50708107 -71135749 + RMER21B LTR ERV1 398 947 0 3 971 2099 72 65 10 chr11 50708216 50708524 -71135332 - BGLII LTR ERVK 0 421 97 3 971 3554 176 126 9 chr11 50708533 50709455 -71134401 - MYSERV16_I-int LTR ERVK 0 2326 1297 3 971 3310 189 62 123 chr11 50709445 50710160 -71133696 - RMER3D-int LTR ERVK -1146 1696 998 3 971 865 25 50 0 chr11 50710160 50710280 -71133576 + (TTTCC)n Simple_repeat Simple_repeat 5 130 0 3 971 3310 189 62 123 chr11 50710280 50710659 -71133197 - RMER3D-int LTR ERVK -1845 997 669 3 971 3110 68 22 5 chr11 50710706 50711120 -71132736 - BGLII LTR ERVK 0 421 1 3 971 457 313 97 41 chr11 50711709 50711999 -71131857 + RLTR18 LTR ERVK 1 306 -310 3 971 2459 128 78 5 chr11 50712169 50712554 -71131302 - MTC LTR MaLR -8 413 1 3 971 555 269 21 20 chr11 50713332 50714365 -71129491 - MMSAT4 Satellite Satellite -29 1034 1 3 971 893 229 85 87 chr11 50715132 50715510 -71128346 + MTE2a LTR MaLR 3 379 0 3 971 732 291 121 47 chr11 50715510 50715871 -71127985 + MTE2a-int LTR MaLR 1 403 -1177 3 971 406 241 74 0 chr11 50715882 50715990 -71127866 + MTE2a-int LTR MaLR 1465 1580 0 3 971 848 276 86 93 chr11 50715998 50716322 -71127534 + MTE2a LTR MaLR 13 334 -45 3 971 5817 168 117 43 chr11 50717306 50718598 -71125258 + MERVL_2A-int LTR ERVL 4375 5761 0 3 971 1835 151 178 87 chr11 50718598 50719053 -71124803 + MT2A LTR ERVL 1 601 0 3 971 434 306 78 65 chr11 50719201 50719446 -71124410 + MIR SINE MIR 2 249 -13 3 971 571 264 188 28 chr11 50720811 50721029 -71122827 + B4A SINE B4 36 288 -4 3 971 235 189 0 70 chr11 50720994 50721051 -71122805 + B3A SINE B2 131 183 -15 3 971 221 246 15 30 chr11 50721051 50721118 -71122738 + (CATA)n Simple_repeat Simple_repeat 2 67 0 3 971 315 0 0 0 chr11 50721137 50721172 -71122684 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 971 196 295 66 0 chr11 50721292 50721353 -71122503 + L2a LINE L2 3021 3085 -341 3 971 844 224 58 55 chr11 50721358 50721703 -71122153 + RLTR15 LTR ERVK 2 347 -12 3 971 268 291 183 10 chr11 50721884 50721988 -71121868 + L2a LINE L2 3304 3425 -1 3 971 1013 238 37 37 chr11 50722933 50723203 -71120653 - B4A SINE B4 -22 270 1 3 971 21 0 0 0 chr11 50723219 50723240 -71120616 + AT_rich Low_complexity Low_complexity 1 21 0 4 971 295 317 8 16 chr11 50724262 50724387 -71119469 - MurSatRep1 Unknown Unknown -1409 728 605 4 121 1722 196 91 9 chr11 50724526 50724876 -71118980 - MTE2b LTR MaLR 0 379 1 4 972 248 215 52 41 chr11 50724926 50725023 -71118833 + ORR1E LTR MaLR 26 123 -236 4 972 429 320 55 49 chr11 50725056 50725220 -71118636 + B4A SINE B4 126 290 -2 4 972 312 27 0 0 chr11 50725225 50725262 -71118594 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 972 528 16 0 0 chr11 50725262 50725322 -71118534 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 972 761 242 50 10 chr11 50726191 50726391 -71117465 - B3 SINE B2 -6 210 3 4 972 539 308 45 0 chr11 50726410 50726608 -71117248 + L1MA5 LINE L1 5897 6103 -197 4 972 342 0 0 0 chr11 50726719 50726757 -71117099 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 972 476 280 139 39 chr11 50726767 50726975 -71116881 - B4A SINE B4 -63 229 1 4 972 452 276 19 0 chr11 50726977 50727082 -71116774 - ID_B1 SINE B4 0 224 118 4 972 253 200 259 8 chr11 50727091 50727222 -71116634 + L1MA5 LINE L1 6130 6293 -7 4 972 2009 144 155 0 chr11 50727292 50727647 -71116209 - MTC LTR MaLR -10 411 2 4 972 441 181 202 25 chr11 50728482 50728601 -71115255 - B1_Mur1 SINE Alu -9 140 1 4 972 4263 158 101 36 chr11 50730485 50731344 -71112512 - RMER21A LTR ERV1 0 947 33 4 972 549 188 283 0 chr11 50731344 50731482 -71112374 - RMER21A LTR ERV1 -769 178 2 4 972 297 228 64 21 chr11 50731795 50731889 -71111967 + L1M5 LINE L1 2558 2655 -3491 4 972 230 360 65 14 chr11 50732223 50732361 -71111495 + MER34 LTR ERV1 102 246 -296 4 972 250 302 44 0 chr11 50732901 50733000 -71110856 + B1F2 SINE Alu 7 115 -34 4 972 357 282 30 53 chr11 50733678 50733728 -71110128 - B3 SINE B2 -4 212 166 4 972 180 0 0 0 chr11 50733728 50733748 -71110108 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 972 357 282 30 53 chr11 50733748 50733828 -71110028 - B3 SINE B2 -51 165 85 4 972 890 187 89 25 chr11 50733918 50734121 -71109735 + B3 SINE B2 1 216 0 4 972 271 320 107 29 chr11 50734206 50734309 -71109547 + PB1D10 SINE Alu 2 112 -15 4 972 251 179 154 0 chr11 50734733 50734811 -71109045 + L1M5 LINE L1 4280 4369 -1777 4 972 227 233 105 40 chr11 50734857 50734933 -71108923 - B4A SINE B4 -4 288 208 4 972 336 304 19 26 chr11 50735820 50736037 -71107819 - MMSAT4 Satellite Satellite -28 215 1 4 972 430 240 61 61 chr11 50736049 50736599 -71107257 - MMSAT4 Satellite Satellite -5 550 1 4 972 291 308 62 34 chr11 50736699 50736877 -71106979 - MurSatRep1 Unknown Unknown -254 1883 1701 4 972 372 281 22 0 chr11 50738215 50738304 -71105552 - B1_Mur4 SINE Alu -50 100 10 4 972 456 290 180 17 chr11 50738356 50738528 -71105328 - B3 SINE B2 -5 211 12 4 972 240 211 57 80 chr11 50739375 50739512 -71104344 + RLTR20A1 LTR ERVK 76 214 -314 4 972 291 265 78 39 chr11 50739654 50739756 -71104100 + L1MC4 LINE L1 112 217 -5998 4 972 356 311 96 0 chr11 50739760 50739895 -71103961 + L1M4c LINE L1 47 194 -6190 4 972 889 259 9 9 chr11 50740191 50740405 -71103451 + B3 SINE B2 1 214 -2 4 972 361 181 83 0 chr11 50740487 50740559 -71103297 + ID2 SINE ID 3 80 -3 4 972 610 219 181 59 chr11 50740898 50741227 -71102629 + RMER10B LTR ERVL 2 361 -81 4 972 404 284 0 0 chr11 50742867 50743001 -71100855 - MurSatRep1 Unknown Unknown -1387 750 617 4 972 712 193 44 7 chr11 50743277 50743413 -71100443 - B1_Mur1 SINE Alu -7 142 2 4 972 198 0 0 0 chr11 50743561 50743583 -71100273 + (A)n Simple_repeat Simple_repeat 1 22 0 4 972 310 300 110 71 chr11 50743608 50743794 -71100062 - MIRb SINE MIR -56 212 25 4 972 321 68 0 0 chr11 50745599 50745643 -71098213 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 4 972 342 0 0 0 chr11 50745698 50745736 -71098120 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 972 3552 193 32 14 chr11 50745738 50746391 -71097465 - RMER1A Other Other -158 872 208 4 972 225 154 0 0 chr11 50747202 50747241 -71096615 + T-rich Low_complexity Low_complexity 1 39 0 4 972 1231 21 7 7 chr11 50747242 50747388 -71096468 - B1_Mus1 SINE Alu -1 147 2 4 972 948 293 78 73 chr11 50747388 50747436 -71096420 + RMER19B LTR ERVK 10 46 -691 4 972 1664 27 0 0 chr11 50747436 50747622 -71096234 + B2_Mm1a SINE B2 2 187 -6 4 972 948 293 78 73 chr11 50747622 50747723 -71096133 + RMER19B LTR ERVK 47 142 -595 4 972 1219 56 0 0 chr11 50747723 50747867 -71095989 + B1_Mm SINE Alu 2 145 -2 4 972 4828 181 19 15 chr11 50747867 50748712 -71095144 + RMER19B LTR ERVK 89 902 0 4 972 1373 219 240 9 chr11 50748821 50749267 -71094589 - Lx8 LINE L1 -4 7469 6921 4 972 21 0 0 0 chr11 50749393 50749414 -71094442 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 779 265 22 11 chr11 50749487 50749670 -71094186 + B3A SINE B2 3 187 -11 4 972 294 29 0 0 chr11 50749799 50749834 -71094022 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 972 23 0 0 0 chr11 50750185 50750208 -71093648 + AT_rich Low_complexity Low_complexity 1 23 0 4 972 883 250 45 28 chr11 50750331 50750578 -71093278 + RMER15-int LTR ERVL 1010 1260 -3739 4 972 338 266 56 35 chr11 50750578 50750598 -71093258 - CYRA11_Mm Unknown Y-chromosome -303 314 171 4 972 802 116 25 0 chr11 50750598 50750719 -71093137 + URR1B DNA MER1_type 102 225 0 4 972 1523 176 150 3 chr11 50750954 50751308 -71092548 + MTD LTR MaLR 12 417 -2 4 972 546 119 0 0 chr11 50751670 50751754 -71092102 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 972 582 245 13 40 chr11 50751853 50752002 -71091854 - B1_Mur1 SINE Alu 0 149 5 4 972 887 342 48 0 chr11 50752074 50752369 -71091487 + RMER15-int LTR ERVL 4316 4624 -375 4 972 486 340 104 35 chr11 50752831 50753090 -71090766 + RMER15 LTR ERVL 299 575 0 4 972 1247 82 32 27 chr11 50753094 50753281 -71090575 - B2_Mm1t SINE B2 -5 188 1 4 972 432 306 46 33 chr11 50753793 50753999 -71089857 - MTD LTR MaLR -204 215 9 4 972 606 283 224 27 chr11 50754156 50754491 -71089365 - MTD LTR MaLR 0 419 19 4 972 268 278 13 53 chr11 50754727 50754746 -71089110 + B4A SINE B4 70 85 -207 4 972 275 300 0 59 chr11 50754746 50754831 -71089025 + B1F2 SINE Alu 1 80 -69 4 972 277 297 25 59 chr11 50754865 50754983 -71088873 + B3A SINE B2 2 115 -83 4 972 253 340 52 26 chr11 50754983 50755019 -71088837 + B4A SINE B4 2 159 -133 4 972 180 91 182 0 chr11 50756593 50756626 -71087230 - MIR SINE MIR -196 66 28 4 972 203 61 0 29 chr11 50756798 50756832 -71087024 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 4 972 571 255 152 36 chr11 50757543 50757820 -71086036 - MER31A LTR ERV1 -94 391 83 4 972 1260 41 0 0 chr11 50758114 50758261 -71085595 - B1_Mm SINE Alu 0 147 1 4 972 642 285 66 11 chr11 50758507 50758669 -71085187 - B3A SINE B2 -7 191 23 4 972 216 0 0 0 chr11 50758669 50758693 -71085163 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4 972 642 285 66 11 chr11 50758693 50758711 -71085145 - B3A SINE B2 -176 22 2 4 972 592 190 195 5 chr11 50758742 50758946 -71084910 - RMER4B LTR ERVK 0 585 343 4 972 249 33 0 0 chr11 50758947 50758977 -71084879 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 4 972 1326 78 0 0 chr11 50758980 50759160 -71084696 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 972 579 180 0 0 chr11 50759160 50759271 -71084585 + CT-rich Low_complexity Low_complexity 1 111 0 4 972 1646 148 17 86 chr11 50759274 50759594 -71084262 - RMER4B LTR ERVK -245 340 45 4 972 662 0 13 0 chr11 50759594 50759672 -71084184 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 972 1646 148 17 86 chr11 50759672 50759699 -71084157 - RMER4B LTR ERVK -541 44 18 4 972 22 0 0 0 chr11 50759708 50759730 -71084126 + AT_rich Low_complexity Low_complexity 1 22 0 4 972 1127 88 0 7 chr11 50759764 50759913 -71083943 - B1_Mus1 SINE Alu 0 148 1 4 972 377 190 27 46 chr11 50760032 50760146 -71083710 + L1M5 LINE L1 5355 5467 -977 4 972 690 247 113 31 chr11 50760141 50760522 -71083334 - L1_Mur3 LINE L1 -2333 3547 3136 4 972 275 268 168 75 chr11 50760848 50761062 -71082794 + LTR37A LTR ERV1 4 237 -189 4 972 499 248 28 28 chr11 50761972 50762117 -71081739 + B1F SINE Alu 5 149 0 4 972 700 261 43 0 chr11 50762520 50762704 -71081152 - MER105 DNA DNA -10 194 3 4 972 299 312 134 0 chr11 50763010 50763122 -71080734 - MER2 DNA MER2_type -1 344 218 4 972 263 261 0 0 chr11 50763171 50763236 -71080620 - RMER30 DNA MER1_type -5 197 133 4 972 290 250 68 0 chr11 50763283 50763371 -71080485 - MER2 DNA MER2_type -137 208 115 4 972 198 71 0 0 chr11 50763374 50763402 -71080454 + (CG)n Simple_repeat Simple_repeat 2 29 0 4 972 459 261 160 0 chr11 50763454 50763573 -71080283 - B1F SINE Alu -1 148 11 4 972 333 0 0 0 chr11 50767060 50767097 -71076759 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 972 229 337 43 49 chr11 50768480 50768512 -71075344 - B2_Mm1a SINE B2 -10 183 152 4 972 333 0 0 0 chr11 50768512 50768549 -71075307 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 972 229 337 43 49 chr11 50768549 50768560 -71075296 - B2_Mm1a SINE B2 -42 151 1 4 972 590 288 29 7 chr11 50768560 50768700 -71075156 - RSINE1 SINE B4 -21 144 2 4 972 353 291 107 13 chr11 50768712 50768862 -71074994 + MER5A1 DNA MER1_type 2 165 -1 4 972 1132 187 5 9 chr11 50769163 50769379 -71074477 + B3 SINE B2 2 216 0 4 972 253 342 116 8 chr11 50770043 50770164 -71073692 - LTR89 LTR ERVL? -2 877 744 4 972 353 295 175 0 chr11 50770326 50770509 -71073347 + ID_B1 SINE B4 1 215 -9 4 972 275 163 0 0 chr11 50770810 50770853 -71073003 + polypyrimidine Low_complexity Low_complexity 3 45 0 4 972 897 153 14 8 chr11 50770853 50771213 -71072643 + CT-rich Low_complexity Low_complexity 1 362 0 4 972 366 205 0 0 chr11 50771235 50771313 -71072543 + CT-rich Low_complexity Low_complexity 3 80 0 4 972 1089 93 46 6 chr11 50773643 50773968 -71069888 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 4 972 1065 253 76 41 chr11 50775048 50775411 -71068445 + Lx4B LINE L1 6475 6982 -76 4 972 263 28 28 0 chr11 50775503 50775539 -71068317 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 972 763 237 59 0 chr11 50775925 50776111 -71067745 - ID_B1 SINE B4 0 224 28 5 972 3271 67 65 2 chr11 50776421 50776715 -71067141 - RLTR44C LTR ERVK -11 491 175 5 972 459 0 0 0 chr11 50776715 50776766 -71067090 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 972 3271 67 65 2 chr11 50776766 50776933 -71066923 - RLTR44C LTR ERVK -328 174 3 5 972 466 229 0 0 chr11 50777390 50777473 -71066383 + ID4 SINE ID 1 83 0 5 972 342 256 72 6 chr11 50777763 50777895 -71065961 - MTD LTR MaLR 0 421 286 5 972 421 315 72 12 chr11 50777909 50778076 -71065780 - MTD LTR MaLR -237 182 6 5 972 263 241 25 12 chr11 50778082 50778162 -71065694 + L1MC LINE L1 4288 4368 -1778 5 972 683 172 30 0 chr11 50778201 50778335 -71065521 + B1_Mur1 SINE Alu 6 143 -6 5 972 380 309 127 26 chr11 50778768 50779154 -71064702 + L1M5 LINE L1 4684 5108 -1038 5 972 369 0 0 0 chr11 50779318 50779359 -71064497 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 972 355 152 25 0 chr11 50779396 50779475 -71064381 + (TATG)n Simple_repeat Simple_repeat 3 83 0 5 972 327 189 38 38 chr11 50779592 50779724 -71064132 + (CATATA)n Simple_repeat Simple_repeat 1 132 0 5 972 472 303 6 25 chr11 50781261 50781420 -71062436 - RSINE1 SINE B4 -8 157 2 5 972 743 228 0 7 chr11 50783902 50784048 -71059808 - B1_Mur2 SINE Alu -4 145 1 5 972 251 341 12 0 chr11 50784910 50784992 -71058864 + PB1D10 SINE Alu 3 85 -32 5 972 228 182 0 0 chr11 50785139 50785183 -71058673 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 972 667 180 0 9 chr11 50785999 50786111 -71057745 - PB1D9 SINE Alu -7 113 3 5 972 30 27 0 0 chr11 50786114 50786151 -71057705 + AT_rich Low_complexity Low_complexity 1 37 0 5 972 1296 117 24 5 chr11 50786409 50786615 -71057241 + Lx4B LINE L1 6849 7058 0 5 972 743 303 7 56 chr11 50787116 50787385 -71056471 + B4A SINE B4 2 257 -35 5 972 4812 63 128 0 chr11 50787467 50788114 -71055742 - Lx3_Mus LINE L1 -8 7001 6272 5 972 3572 68 63 82 chr11 50788114 50788703 -71055153 + Lx3_Mus LINE L1 5694 6271 -738 5 972 282 246 61 43 chr11 50789223 50789338 -71054518 + L1MD LINE L1 2784 2900 -3246 5 972 1450 192 88 18 chr11 50789738 50790067 -71053789 - ORR1E LTR MaLR -7 352 1 5 972 324 0 0 0 chr11 50791244 50791280 -71052576 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 972 854 255 42 142 chr11 50791398 50791725 -71052131 + MTE2a LTR MaLR 1 298 -81 5 972 1866 192 16 35 chr11 50791725 50792102 -71051754 + ORR1D1 LTR MaLR 2 371 -3 5 972 854 255 42 142 chr11 50792102 50792181 -71051675 + MTE2a LTR MaLR 299 366 -13 5 972 497 237 17 0 chr11 50793681 50793799 -71050057 - B3 SINE B2 0 216 97 5 972 686 245 84 16 chr11 50794379 50794628 -71049228 + B4 SINE B4 27 292 0 5 972 492 242 0 0 chr11 50794628 50794883 -71048973 + (CA)n Simple_repeat Simple_repeat 1 255 0 5 972 749 249 119 0 chr11 50796555 50796748 -71047108 + B3 SINE B2 1 216 0 5 972 21 0 0 0 chr11 50796749 50796770 -71047086 + AT_rich Low_complexity Low_complexity 1 21 0 5 972 1498 138 5 0 chr11 50796923 50797147 -71046709 - URR1A DNA MER1_type 0 226 2 5 972 589 180 18 0 chr11 50797496 50797607 -71046249 - B1_Mus1 SINE Alu 0 148 36 5 972 351 276 101 22 chr11 50800686 50800864 -71042992 + L1MD LINE L1 4010 4201 -1945 5 972 318 272 22 0 chr11 50801750 50801842 -71042014 + PB1D10 SINE Alu 23 116 -1 5 972 510 17 0 0 chr11 50801942 50802001 -71041855 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 972 198 118 0 0 chr11 50802001 50802034 -71041822 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 972 434 353 60 0 chr11 50802038 50802188 -71041668 - RSINE1 SINE B4 -4 161 3 5 972 21 0 0 0 chr11 50802347 50802368 -71041488 + AT_rich Low_complexity Low_complexity 1 21 0 5 972 576 263 0 0 chr11 50802864 50803043 -71040813 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 972 603 158 0 0 chr11 50803442 50803588 -71040268 + GA-rich Low_complexity Low_complexity 1 146 0 5 972 281 312 50 0 chr11 50804620 50804700 -71039156 + PB1 SINE Alu 5 88 -39 5 972 359 41 0 20 chr11 50804722 50804772 -71039084 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 972 216 281 21 43 chr11 50804778 50804871 -71038985 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 5 972 206 183 67 0 chr11 50805017 50805077 -71038779 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 972 650 268 83 51 chr11 50806952 50807357 -71036499 + RLTR11A2 LTR ERVK 5 414 -27 5 972 468 106 0 0 chr11 50807698 50807783 -71036073 + (CTTG)n Simple_repeat Simple_repeat 2 86 0 5 972 1073 128 0 11 chr11 50807807 50807988 -71035868 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 5 972 1313 181 137 3 chr11 50808351 50808673 -71035183 + ORR1D2 LTR MaLR 5 369 -1 5 972 4231 151 57 7 chr11 50809050 50809752 -71034104 + RMER19A LTR ERVK 1 737 0 5 972 242 265 43 14 chr11 50810074 50810085 -71033771 + B1F SINE Alu 66 136 -13 5 972 284 259 0 0 chr11 50810085 50810143 -71033713 + ID_B1 SINE B4 154 211 -13 5 972 273 57 0 0 chr11 50810143 50810178 -71033678 + (CTAA)n Simple_repeat Simple_repeat 2 36 0 5 972 531 0 0 0 chr11 50810178 50810237 -71033619 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 5 972 404 210 0 29 chr11 50810355 50810458 -71033398 + MTC LTR MaLR 1 100 -321 5 972 563 199 107 12 chr11 50810480 50810648 -71033208 - Lx8 LINE L1 -1 7472 7289 5 972 1682 148 42 7 chr11 50810648 50810954 -71032902 + MTC LTR MaLR 105 421 0 5 972 230 330 11 21 chr11 50811280 50811373 -71032483 - PB1 SINE Alu -17 110 19 5 972 1067 201 45 12 chr11 50811403 50811645 -71032211 - Lx9 LINE L1 -682 6962 6713 5 972 2626 174 62 64 chr11 50811647 50812292 -71031564 + Lx9 LINE L1 6995 7638 -6 5 972 225 0 0 0 chr11 50813417 50813442 -71030414 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 972 523 323 98 41 chr11 50814001 50814521 -71029335 + L1MD3 LINE L1 6970 7725 -270 5 972 251 259 88 34 chr11 50814821 50814969 -71028887 + L1M4c LINE L1 2069 2224 -5110 5 972 299 320 52 6 chr11 50815127 50815300 -71028556 + L1M4c LINE L1 2212 2392 -4616 5 972 264 325 90 34 chr11 50815328 50815793 -71028063 + L1M4c LINE L1 2558 3048 -3960 5 972 443 288 63 28 chr11 50816188 50816331 -71027525 + RSINE1 SINE B4 14 161 -4 5 972 267 200 0 62 chr11 50816375 50816439 -71027417 + ID SINE ID 24 83 -141 5 972 226 258 43 33 chr11 50816439 50816464 -71027392 + BC1_Mm scRNA scRNA 23 112 -40 5 972 407 281 0 40 chr11 50817516 50817668 -71026188 + GA-rich Low_complexity Low_complexity 6 151 0 5 972 477 0 0 0 chr11 50817979 50818032 -71025824 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 972 785 224 5 75 chr11 50818769 50818981 -71024875 + B3A SINE B2 2 198 0 5 972 2382 145 31 33 chr11 50819365 50819787 -71024069 + MTC LTR MaLR 1 421 0 5 972 231 122 0 63 chr11 50819942 50819985 -71023871 + T-rich Low_complexity Low_complexity 36 75 0 5 972 1100 110 0 0 chr11 50819985 50820131 -71023725 - B1_Mus1 SINE Alu 0 148 3 5 972 231 122 0 63 chr11 50820131 50820166 -71023690 + T-rich Low_complexity Low_complexity 2 35 0 5 972 441 0 0 0 chr11 50822366 50822415 -71021441 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 972 270 0 0 0 chr11 50822415 50822444 -71021412 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 972 324 0 0 0 chr11 50822444 50822479 -71021377 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 972 341 304 148 0 chr11 50822682 50822817 -71021039 + RSINE1 SINE B4 2 156 -9 5 972 273 253 0 2 chr11 50823756 50823823 -71020033 - ORR1E LTR MaLR -18 403 291 5 972 769 170 0 28 chr11 50823886 50824031 -71019825 - ORR1E LTR MaLR -218 141 1 5 972 320 286 50 0 chr11 50824682 50824801 -71019055 + L1MC3 LINE L1 6963 7087 -698 5 972 1065 126 38 159 chr11 50824814 50825078 -71018778 + ORR1C2 LTR MaLR 1 232 -152 5 972 3693 47 24 0 chr11 50825682 50826133 -71017723 - L1_Mus1 LINE L1 0 6567 6106 5 972 208 61 203 0 chr11 50826307 50826603 -71017253 + (CTGTG)n Simple_repeat Simple_repeat 1 355 0 5 972 301 27 219 0 chr11 50826653 50826799 -71017057 + (CTGTG)n Simple_repeat Simple_repeat 1 178 0 5 972 204 185 29 44 chr11 50826806 50826874 -71016982 + (ATGTG)n Simple_repeat Simple_repeat 3 69 0 5 972 412 244 25 57 chr11 50826877 50826934 -71016922 + MTEb LTR MaLR 3 59 -320 5 972 2034 107 12 56 chr11 50826934 50827271 -71016585 - RLTRETN_Mm LTR ERVK 0 322 1 5 972 691 259 225 38 chr11 50827271 50827532 -71016324 + MTEb LTR MaLR 60 368 -11 5 972 1321 80 17 0 chr11 50828857 50829032 -71014824 - B2_Mm2 SINE B2 -14 181 4 5 972 535 152 18 0 chr11 50829095 50829207 -71014649 + CT-rich Low_complexity Low_complexity 4 117 0 5 972 851 225 49 15 chr11 50829249 50829452 -71014404 - ID_B1 SINE B4 -8 216 7 5 972 450 228 30 0 chr11 50829700 50829801 -71014055 + ID_B1 SINE B4 100 203 -21 5 972 8688 30 0 0 chr11 50830238 50831234 -71012622 - L1Md_T LINE L1 0 6582 5587 5 972 42040 4 0 1 chr11 50831732 50838092 -71005764 - L1Md_A LINE L1 0 6582 232 5 972 447 125 0 0 chr11 50838115 50838187 -71005669 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 972 846 83 56 13 chr11 50838189 50838422 -71005434 + (TCTA)n Simple_repeat Simple_repeat 1 243 0 5 972 469 227 55 70 chr11 50838424 50838552 -71005304 - B3 SINE B2 -11 205 80 5 972 497 316 17 0 chr11 50838943 50839120 -71004736 - B3A SINE B2 -18 180 1 5 972 204 97 0 0 chr11 50839124 50839155 -71004701 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 5 972 1431 79 16 5 chr11 50839155 50839346 -71004510 - B2_Mm2 SINE B2 0 195 3 5 972 301 341 89 0 chr11 50839447 50839570 -71004286 - L2b LINE L2 0 3375 3242 5 972 738 162 118 40 chr11 50839645 50839835 -71004021 + MTC LTR MaLR 35 263 -158 5 972 1841 164 113 11 chr11 50839835 50840217 -71003639 - MTC LTR MaLR 0 421 1 5 972 738 132 107 44 chr11 50840217 50840242 -71003614 + MTC LTR MaLR 264 283 -138 5 972 744 71 0 0 chr11 50840301 50840400 -71003456 + (CA)n Simple_repeat Simple_repeat 1 99 0 5 972 708 230 7 0 chr11 50842449 50842588 -71001268 - B3A SINE B2 -34 164 25 5 972 3650 121 44 29 chr11 50842780 50842875 -71000981 - RLTR5_Mm LTR ERV1 0 628 535 5 972 201 39 0 0 chr11 50842875 50842901 -71000955 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 972 3650 121 44 29 chr11 50842901 50843424 -71000432 - RLTR5_Mm LTR ERV1 -94 534 3 5 972 363 336 9 0 chr11 50843448 50843558 -71000298 - PB1D10 SINE Alu 0 117 7 6 972 387 345 158 4 chr11 50843826 50844073 -70999783 + MER74A LTR ERVL 219 503 -55 6 972 305 257 29 0 chr11 50844466 50844536 -70999320 + RSINE1 SINE B4 51 122 -43 6 972 4141 115 0 12 chr11 50844741 50845011 -70998845 - MT2B2 LTR ERVL 0 584 321 6 972 2577 44 3 48 chr11 50845011 50845348 -70998508 + RLTRETN_Mm LTR ERVK 1 322 0 6 972 4141 115 0 12 chr11 50845348 50845668 -70998188 - MT2B2 LTR ERVL -264 320 1 6 972 400 297 25 33 chr11 50845674 50845796 -70998060 + RSINE1 SINE B4 45 165 0 6 972 540 272 62 33 chr11 50845933 50846169 -70997687 - L1PB4 LINE L1 -373 5930 5688 6 972 454 232 79 18 chr11 50846371 50846485 -70997371 + B1F1 SINE Alu 23 143 -6 6 972 244 100 32 32 chr11 50846626 50846688 -70997168 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 6 972 305 281 147 8 chr11 50846691 50846820 -70997036 + HAL1-3A_ME LINE L1 1978 2124 -734 6 972 755 260 18 0 chr11 50846846 50847015 -70996841 - RLTR25B LTR ERVK -2 1026 855 6 972 331 129 64 11 chr11 50847042 50847136 -70996720 + CT-rich Low_complexity Low_complexity 3 101 0 6 972 246 214 135 111 chr11 50847141 50847169 -70996687 - RLTR25B LTR ERVK -108 920 885 6 972 315 0 0 0 chr11 50847169 50847204 -70996652 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 972 318 26 0 0 chr11 50847204 50847242 -70996614 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 972 246 214 135 111 chr11 50847242 50847338 -70996518 - RLTR25B LTR ERVK -144 884 793 6 972 235 375 35 0 chr11 50847339 50847483 -70996373 - L1MEc LINE L1 -5685 715 567 6 972 2234 105 9 58 chr11 50847552 50847896 -70995960 - ORR1A2 LTR MaLR 0 327 1 6 972 210 324 42 0 chr11 50848105 50848176 -70995680 + B1F2 SINE Alu 6 79 -70 6 972 210 71 0 0 chr11 50848227 50848255 -70995601 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 972 225 0 0 0 chr11 50848697 50848722 -70995134 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 972 274 294 44 7 chr11 50848771 50848908 -70994948 + L1MD3 LINE L1 6946 7106 -889 6 972 1106 140 38 156 chr11 50848921 50849184 -70994672 + ORR1C2 LTR MaLR 1 232 -152 6 972 247 17 235 0 chr11 50849979 50850098 -70993758 + (CTGTG)n Simple_repeat Simple_repeat 2 148 0 6 972 308 213 120 24 chr11 50850098 50850223 -70993633 - HAL1-2a_MD LINE L1 -517 2507 2371 6 972 1142 257 123 33 chr11 50850236 50850333 -70993523 + MTEb LTR MaLR 3 99 -280 6 972 4205 134 83 16 chr11 50850333 50850759 -70993097 + RMER17D2 LTR ERVK 1 475 -334 6 972 625 55 11 11 chr11 50850759 50850850 -70993006 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 972 4205 134 83 16 chr11 50850850 50851181 -70992675 + RMER17D2 LTR ERVK 476 809 0 6 972 1142 257 123 33 chr11 50851181 50851417 -70992439 + MTEb LTR MaLR 100 366 -13 6 972 180 273 101 25 chr11 50851620 50851699 -70992157 + L3 LINE CR1 859 943 -3546 6 972 232 319 28 0 chr11 50852992 50853064 -70990792 - ID2 SINE ID -3 80 7 6 972 1237 109 17 0 chr11 50853637 50853812 -70990044 - B2_Mm2 SINE B2 -14 181 4 6 972 337 318 162 25 chr11 50853898 50854095 -70989761 - HAL1-3A_ME LINE L1 -652 2206 1983 6 972 753 271 42 33 chr11 50854098 50854312 -70989544 - ID_B1 SINE B4 -8 216 1 6 972 406 273 88 29 chr11 50854534 50854670 -70989186 + ID_B1 SINE B4 81 224 0 6 972 459 0 0 0 chr11 50855287 50855338 -70988518 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 972 328 122 61 0 chr11 50855356 50855438 -70988418 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 6 973 261 350 0 0 chr11 50856632 50856712 -70987144 - ID2 SINE ID -2 81 2 6 973 1240 99 16 32 chr11 50857295 50857483 -70986373 - B2_Mm2 SINE B2 -8 187 3 6 973 301 273 203 0 chr11 50857524 50857652 -70986204 - HAL1-3A_ME LINE L1 -421 2437 2284 6 973 968 230 50 5 chr11 50857701 50857902 -70985954 - ID_B1 SINE B4 -8 216 7 6 973 489 230 88 0 chr11 50858145 50858258 -70985598 + ID_B1 SINE B4 100 222 -2 6 973 1074 76 0 0 chr11 50859115 50859273 -70984583 + (TC)n Simple_repeat Simple_repeat 1 158 0 6 973 649 95 65 0 chr11 50859315 50859484 -70984372 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 973 488 225 58 65 chr11 50859488 50859626 -70984230 - B3 SINE B2 0 216 80 6 973 650 303 15 15 chr11 50860010 50860208 -70983648 - B3A SINE B2 0 198 1 6 973 192 77 0 0 chr11 50860212 50860238 -70983618 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 6 973 1447 74 16 5 chr11 50860238 50860429 -70983427 - B2_Mm2 SINE B2 0 195 3 6 973 301 341 89 0 chr11 50860530 50860653 -70983203 - L2b LINE L2 0 3375 3242 6 973 800 181 113 44 chr11 50860720 50860920 -70982936 + MTC LTR MaLR 30 263 -158 6 973 1888 156 112 13 chr11 50860920 50861303 -70982553 - MTC LTR MaLR 0 421 1 6 973 800 172 109 34 chr11 50861303 50861334 -70982522 + MTC LTR MaLR 264 289 -132 6 973 894 19 0 0 chr11 50861404 50861508 -70982348 + (GA)n Simple_repeat Simple_repeat 2 105 0 6 973 648 248 15 8 chr11 50863114 50863272 -70980584 - B3A SINE B2 -34 164 9 6 973 4942 71 15 29 chr11 50863456 50864122 -70979734 - L1_Mus2 LINE L1 0 6566 5910 6 973 433 320 4 3 chr11 50864123 50864253 -70979603 - PB1D10 SINE Alu -13 136 6 6 973 388 333 88 60 chr11 50864526 50864743 -70979113 + MER74A LTR ERVL 217 439 -119 6 973 306 257 29 0 chr11 50865150 50865220 -70978636 + RSINE1 SINE B4 51 122 -43 6 973 502 294 18 59 chr11 50865384 50865425 -70978431 + RSINE1 SINE B4 3 42 -123 6 973 4266 100 7 7 chr11 50865425 50866009 -70977847 - MT2B2 LTR ERVL 0 584 1 6 973 502 294 18 59 chr11 50866009 50866137 -70977719 + RSINE1 SINE B4 43 165 0 6 973 559 257 52 31 chr11 50866274 50866510 -70977346 - L1PB4 LINE L1 -373 5930 5688 6 973 462 196 88 18 chr11 50866712 50866826 -70977030 + B1F1 SINE Alu 23 144 -5 6 973 259 210 14 14 chr11 50866974 50867119 -70976737 + (CAGAGA)n Simple_repeat Simple_repeat 6 150 0 6 973 243 61 0 0 chr11 50867180 50867213 -70976643 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 973 387 0 0 0 chr11 50867213 50867255 -70976601 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 973 774 244 52 113 chr11 50867290 50867552 -70976304 - RLTR25A LTR ERVK -1 1102 871 6 973 351 0 0 0 chr11 50867552 50867591 -70976265 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 973 774 244 52 113 chr11 50867591 50867638 -70976218 - RLTR25A LTR ERVK -233 870 812 6 973 284 365 32 0 chr11 50867672 50867828 -70976028 - L1MEc LINE L1 -5672 728 568 6 973 2408 77 0 116 chr11 50867898 50868268 -70975588 - ORR1A2 LTR MaLR 0 327 1 6 973 250 296 42 0 chr11 50868476 50868547 -70975309 + B1F SINE Alu 6 79 -70 6 973 1771 239 63 87 chr11 50868829 50869360 -70974496 + RMER19C LTR ERVK 3 607 -4 6 973 489 243 21 67 chr11 50869364 50869558 -70974298 - RLTR11B LTR ERVK -33 420 236 6 973 1021 271 34 31 chr11 50869557 50869881 -70973975 - RLTR11B LTR ERVK -128 325 1 6 973 407 305 76 8 chr11 50870271 50870403 -70973453 + B1F SINE Alu 1 141 -8 6 973 680 245 94 61 chr11 50870438 50870768 -70973088 - RLTR15 LTR ERVK -18 341 1 6 973 351 214 14 0 chr11 50870771 50870841 -70973015 + ID4_ SINE ID 6 76 -7 6 973 378 294 184 0 chr11 50870881 50871017 -70972839 - RSINE1 SINE B4 -2 163 3 6 973 398 283 54 84 chr11 50871239 50871554 -70972302 + ORR1E LTR MaLR 74 368 -6 6 973 204 200 0 0 chr11 50871639 50871704 -70972152 + T-rich Low_complexity Low_complexity 1 65 0 6 973 688 226 22 22 chr11 50872314 50872495 -70971361 - B3A SINE B2 -16 182 2 6 973 270 0 0 0 chr11 50872509 50872539 -70971317 + (A)n Simple_repeat Simple_repeat 1 30 0 6 973 198 0 0 0 chr11 50874097 50874119 -70969737 + (TTGG)n Simple_repeat Simple_repeat 1 22 0 6 973 403 282 0 0 chr11 50874368 50874499 -70969357 + MurSatRep1 Unknown Unknown 620 750 -1387 6 973 1085 114 0 0 chr11 50875136 50875285 -70968571 + B2_Mm2 SINE B2 1 149 -46 6 973 566 158 11 0 chr11 50875288 50875383 -70968473 + B2_Mm1t SINE B2 96 191 -2 6 973 353 222 14 14 chr11 50875391 50875464 -70968392 + ID4_ SINE ID 1 73 -10 6 973 279 0 0 0 chr11 50875475 50875506 -70968350 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 973 562 301 110 0 chr11 50876647 50876820 -70967036 + B3 SINE B2 15 206 -10 6 973 602 216 42 21 chr11 50878128 50878270 -70965586 + B1F SINE Alu 5 149 0 6 973 3481 179 57 31 chr11 50878730 50879433 -70964423 - Lx5 LINE L1 -286 6764 6044 6 973 480 200 11 0 chr11 50879435 50879525 -70964331 - MTC LTR MaLR -330 91 1 6 973 401 286 0 0 chr11 50879642 50879740 -70964116 + L2 LINE L2 2285 2382 -1037 6 973 185 319 30 60 chr11 50880656 50880756 -70963100 - L2 LINE L2 -624 2795 2699 6 973 2150 158 23 41 chr11 50880769 50881158 -70962698 - ORR1C2 LTR MaLR -2 382 1 6 973 231 345 68 93 chr11 50881276 50881554 -70962302 - ORR1E LTR MaLR -8 351 81 6 973 539 256 128 0 chr11 50881945 50882070 -70961786 + B1F SINE Alu 1 141 -8 6 973 357 24 0 0 chr11 50882083 50882125 -70961731 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 973 278 224 176 0 chr11 50882210 50882295 -70961561 + ID_B1 SINE B4 83 182 -42 6 973 358 188 76 76 chr11 50882222 50882314 -70961542 + PB1D10 SINE Alu 20 111 -6 6 973 259 328 73 41 chr11 50883145 50883451 -70960405 + MurSatRep1 Unknown Unknown 1727 2134 -3 6 973 447 246 48 48 chr11 50883401 50883951 -70959905 + MMSAT4 Satellite Satellite 1 550 -5 6 973 325 301 39 39 chr11 50883986 50884191 -70959665 + MMSAT4 Satellite Satellite 1 205 0 6 973 311 244 23 23 chr11 50884398 50884486 -70959370 + PB1 SINE Alu 33 120 -7 6 973 469 301 91 0 chr11 50885010 50885153 -70958703 + B3A SINE B2 5 160 -38 7 973 829 280 46 26 chr11 50885557 50885849 -70958007 + MTEa LTR MaLR 12 299 -80 7 973 255 103 0 0 chr11 50885857 50885896 -70957960 + (TATG)n Simple_repeat Simple_repeat 4 42 0 7 973 927 109 57 14 chr11 50885922 50886062 -70957794 - B1_Mur4 SINE Alu -3 147 2 7 973 318 293 0 0 chr11 50886679 50886754 -70957102 + RLTR24 LTR ERV1 1 75 -454 7 973 265 278 55 11 chr11 50887170 50887261 -70956595 + B3 SINE B2 12 106 -110 7 973 306 326 22 0 chr11 50887994 50888086 -70955770 + PB1D10 SINE Alu 2 95 -22 7 973 2218 145 50 8 chr11 50888696 50889072 -70954784 - ORR1B1 LTR MaLR 0 394 3 7 973 4793 115 47 35 chr11 50889290 50890259 -70953597 - RMER17B LTR ERVK 0 958 1 7 973 2982 23 9 0 chr11 50891000 50891343 -70952513 - ORR1A0 LTR MaLR 0 346 1 7 973 21 71 0 0 chr11 50891356 50891398 -70952458 + AT_rich Low_complexity Low_complexity 1 42 0 7 973 509 236 53 45 chr11 50891626 50891759 -70952097 + B1_Mur1 SINE Alu 9 142 -7 7 973 344 256 0 11 chr11 50891791 50891878 -70951978 + B3 SINE B2 79 164 -52 7 973 338 190 0 132 chr11 50892271 50892362 -70951494 - MYSERV6-int LTR ERVK -4874 4085 4007 7 973 6214 180 52 27 chr11 50892426 50893044 -70950812 - Lx4B LINE L1 0 7058 6327 7 973 198 103 0 0 chr11 50893044 50893073 -70950783 + (TTA)n Simple_repeat Simple_repeat 2 30 0 7 973 1138 28 0 78 chr11 50893073 50893226 -70950630 - B1_Mm SINE Alu -6 141 1 7 973 6214 159 52 27 chr11 50893226 50893510 -70950346 - Lx4B LINE L1 -732 6326 6025 7 973 2641 62 116 8 chr11 50893510 50893607 -70950249 - RLTR10A LTR ERVK 0 411 316 7 973 630 0 0 0 chr11 50893607 50893677 -70950179 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 973 2641 62 116 8 chr11 50893677 50893950 -70949906 - RLTR10A LTR ERVK -96 315 1 7 973 6214 163 44 23 chr11 50893950 50894470 -70949386 - Lx4B LINE L1 -974 6026 5496 7 973 1685 164 27 36 chr11 50894499 50894717 -70949139 + RMER19B LTR ERVK 571 778 -124 7 973 288 0 0 0 chr11 50894717 50894749 -70949107 + (CCA)n Simple_repeat Simple_repeat 2 33 0 7 973 1685 164 27 36 chr11 50894749 50894865 -70948991 + RMER19B LTR ERVK 779 902 0 7 973 7437 78 24 6 chr11 50895555 50896588 -70947268 - Lx3_Mus LINE L1 0 7009 5958 7 973 478 315 18 18 chr11 50897408 50897579 -70946277 + ORR1E LTR MaLR 7 177 -182 7 973 207 0 0 0 chr11 50898753 50898776 -70945080 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 973 266 261 80 80 chr11 50899775 50899900 -70943956 - Charlie8 DNA MER1_type -2267 161 37 7 973 805 140 0 39 chr11 50900065 50900243 -70943613 + CT-rich Low_complexity Low_complexity 4 174 0 7 973 204 97 0 0 chr11 50900250 50900281 -70943575 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 7 973 362 255 9 0 chr11 50900913 50901019 -70942837 - L1MA6 LINE L1 -1 6299 6193 7 973 2198 180 12 46 chr11 50901052 50901184 -70942672 + Lx6 LINE L1 5478 5615 -1443 7 973 459 52 0 0 chr11 50901184 50901242 -70942614 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 973 2406 244 66 73 chr11 50901242 50902558 -70941298 + Lx6 LINE L1 5616 7433 -27 7 973 1215 48 0 0 chr11 50903518 50903665 -70940191 + B1_Mus2 SINE Alu 1 147 0 7 973 207 49 73 0 chr11 50907295 50907336 -70936520 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 973 912 139 21 0 chr11 50908477 50908621 -70935235 + B1_Mur3 SINE Alu 3 149 0 7 973 594 246 15 0 chr11 50908705 50908839 -70935017 - B1_Mur3 SINE Alu -10 139 4 7 973 237 222 82 14 chr11 50908853 50908926 -70934930 - MurSatRep1 Unknown Unknown -1835 302 225 7 973 878 240 186 23 chr11 50908983 50909328 -70934528 + MTD LTR MaLR 19 419 0 7 973 561 296 45 28 chr11 50909427 50909622 -70934234 - B3A SINE B2 -6 210 5 7 973 22 0 0 0 chr11 50909649 50909671 -70934185 + AT_rich Low_complexity Low_complexity 1 22 0 7 973 270 0 0 0 chr11 50909671 50909701 -70934155 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 973 235 296 13 66 chr11 50909707 50909783 -70934073 - B3A SINE B2 -42 156 85 7 973 477 0 0 0 chr11 50909785 50909838 -70934018 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 973 270 0 0 0 chr11 50909838 50909867 -70933989 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 973 549 0 0 0 chr11 50910221 50910282 -70933574 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 973 566 260 45 8 chr11 50911870 50912002 -70931854 + ETnERV2-int LTR ERVK 7066 7202 -204 7 973 1202 78 0 6 chr11 50913198 50913379 -70930477 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 973 852 147 0 0 chr11 50913379 50913508 -70930348 - B1_Mus2 SINE Alu -9 138 10 7 973 224 351 52 0 chr11 50913976 50914053 -70929803 - PB1D10 SINE Alu -31 86 6 7 973 320 260 13 0 chr11 50914344 50914421 -70929435 - ID_B1 SINE B4 -131 93 16 7 973 414 219 124 0 chr11 50914592 50914697 -70929159 + PB1D9 SINE Alu 1 118 -2 7 973 414 0 0 0 chr11 50914790 50914836 -70929020 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 973 490 321 38 0 chr11 50914837 50914968 -70928888 - RSINE1 SINE B4 -22 143 8 7 973 420 271 186 0 chr11 50914976 50915094 -70928762 - RSINE1 SINE B4 -17 148 9 7 973 558 0 0 0 chr11 50915136 50915198 -70928658 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 973 261 0 0 0 chr11 50915198 50915226 -70928630 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 973 344 289 146 15 chr11 50915318 50915448 -70928408 - B1F1 SINE Alu -1 148 2 7 973 823 252 80 17 chr11 50916555 50916842 -70927014 + L1_Mur3 LINE L1 5172 5476 -404 7 973 2615 171 74 16 chr11 50917180 50917679 -70926177 - RLTR11A LTR ERVK 0 528 1 7 973 6996 218 67 57 chr11 50917681 50919956 -70923900 - MYSERV16_I-int LTR ERVK -469 1857 1 7 973 661 231 0 0 chr11 50921454 50921588 -70922268 - RLTR11A LTR ERVK -6 522 389 7 973 1526 315 17 10 chr11 50922550 50923146 -70920710 - RMER16-int LTR ERVK -417 4989 4390 7 973 2704 113 57 4 chr11 50923253 50923731 -70920125 + MYSERV16_I-int LTR ERVK 1077 1579 -747 7 973 2430 79 0 51 chr11 50926116 50926489 -70917367 + RLTR10D LTR ERVK 1 354 -5 7 973 24 0 0 0 chr11 50926913 50926937 -70916919 + AT_rich Low_complexity Low_complexity 1 24 0 7 973 255 236 0 0 chr11 50926947 50927019 -70916837 + (TTCA)n Simple_repeat Simple_repeat 1 72 0 7 973 507 273 19 19 chr11 50927019 50927176 -70916680 - RSINE1 SINE B4 0 165 9 7 973 315 222 59 92 chr11 50927180 50927299 -70916557 - PB1D9 SINE Alu -1 119 5 7 973 704 327 25 7 chr11 50927642 50927922 -70915934 - B4A SINE B4 -5 287 3 7 973 398 143 0 0 chr11 50927963 50928026 -70915830 + L1Md_A LINE L1 420 482 -6156 7 973 4965 78 14 6 chr11 50928026 50929261 -70914595 + L1Md_F2 LINE L1 4972 5586 -297 7 973 8252 42 3 7 chr11 50929264 50930248 -70913608 + L1Md_F2 LINE L1 5590 6569 -13 7 973 16589 62 2 1 chr11 50930266 50932509 -70911347 + L1Md_A LINE L1 1106 3341 -2542 7 973 638 147 0 0 chr11 50932508 50932603 -70911253 + L1Md_F2 LINE L1 243 337 -6282 7 973 33706 72 2 1 chr11 50932596 50937523 -70906333 + L1Md_F2 LINE L1 563 5589 -297 7 973 8314 41 1 2 chr11 50937526 50938508 -70905348 + L1Md_F2 LINE L1 5593 6573 -12 7 973 239 33 0 0 chr11 50938509 50938539 -70905317 + L1Md_A LINE L1 3328 3357 -2526 7 973 1441 179 71 106 chr11 50938539 50938946 -70904910 - RLTR9C LTR ERVK 0 393 1 7 973 455 133 0 0 chr11 50938946 50939021 -70904835 - ETnERV2-int LTR ERVK -1 7405 7331 7 973 4021 182 27 39 chr11 50939237 50941278 -70902578 - ETnERV2-int LTR ERVK -3321 4085 2356 7 973 736 118 0 8 chr11 50941693 50941813 -70902043 - RLTR13D1 LTR ERVK -186 620 502 7 973 2677 173 22 14 chr11 50941813 50942317 -70901539 - ETnERV2-int LTR ERVK -4403 3003 2496 7 973 4119 186 50 84 chr11 50942344 50943444 -70900412 - MMETn-int LTR ERVK -3675 1169 108 7 973 293 248 28 56 chr11 50943479 50943586 -70900270 - MMETn-int LTR ERVK -4740 104 1 7 973 1590 141 79 104 chr11 50943587 50943990 -70899866 - RLTR9C LTR ERVK 0 393 1 7 973 10184 71 8 10 chr11 50943990 50945372 -70898484 + L1_Mm LINE L1 3352 4730 -1153 7 973 562 282 49 0 chr11 50945399 50945541 -70898315 + B1F SINE Alu 1 149 0 7 973 650 170 7 0 chr11 50945633 50945780 -70898076 + GA-rich Low_complexity Low_complexity 2 149 0 7 973 2545 139 55 12 chr11 50946051 50946540 -70897316 + RLTR28 LTR ERVL 1 510 -14 7 973 906 239 60 0 chr11 50946765 50946966 -70896890 + ID_B1 SINE B4 1 213 -11 7 973 327 218 9 26 chr11 50946966 50947079 -70896777 + (TATATG)n Simple_repeat Simple_repeat 2 112 0 7 973 230 200 0 48 chr11 50947274 50947337 -70896519 + MLT1A1 LTR MaLR 311 370 -38 7 973 1276 256 31 39 chr11 50947508 50947890 -70895966 - MTE2a LTR MaLR 0 379 1 7 973 1668 32 0 0 chr11 50948007 50948195 -70895661 + B2_Mm1a SINE B2 1 188 -5 7 973 51 58 0 0 chr11 50949419 50949505 -70894351 + AT_rich Low_complexity Low_complexity 1 86 0 7 973 517 255 39 26 chr11 50949547 50949700 -70894156 - L1MCa LINE L1 -1144 5177 5023 7 973 525 267 58 35 chr11 50949686 50949857 -70893999 + L1M4c LINE L1 4 178 -6206 7 973 318 50 0 0 chr11 50950005 50950045 -70893811 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 973 234 0 0 0 chr11 50950045 50950070 -70893786 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 973 265 287 75 0 chr11 50950650 50950744 -70893112 - PB1D10 SINE Alu 0 117 17 7 973 215 179 26 0 chr11 50951254 50951293 -70892563 + B1F SINE Alu 17 56 -93 7 973 242 242 10 81 chr11 50951262 50951344 -70892512 + PB1D10 SINE Alu 26 103 -14 7 973 1227 84 0 0 chr11 50951344 50951522 -70892334 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 7 973 242 242 10 81 chr11 50951522 50951538 -70892318 + PB1D10 SINE Alu 104 116 -1 7 973 22 70 0 0 chr11 50951623 50951666 -70892190 + AT_rich Low_complexity Low_complexity 1 43 0 7 973 592 250 124 11 chr11 50951738 50951916 -70891940 + B3A SINE B2 1 198 0 7 973 27 0 0 0 chr11 50951917 50951944 -70891912 + AT_rich Low_complexity Low_complexity 1 27 0 7 973 183 80 0 0 chr11 50952021 50952046 -70891810 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 973 6230 110 8 43 chr11 50952052 50953078 -70890778 - L1_Mm LINE L1 -2194 3689 2700 7 973 1669 242 22 24 chr11 50953075 50953485 -70890371 - Lx5 LINE L1 -9 7041 6633 7 973 394 260 22 39 chr11 50953548 50953728 -70890128 - L1MCa LINE L1 -4693 1815 1639 7 973 236 267 133 0 chr11 50953761 50953851 -70890005 - L1MC1 LINE L1 -6 6327 6226 7 973 355 222 27 36 chr11 50953972 50954084 -70889772 - L1M2 LINE L1 -1118 5025 4915 7 973 628 151 410 6 chr11 50954168 50954324 -70889532 - URR1B DNA MER1_type -6 219 1 7 973 280 264 124 5 chr11 50954362 50954556 -70889300 + L1M2 LINE L1 4254 4470 -1673 7 973 813 244 69 5 chr11 50954680 50954882 -70888974 + B3 SINE B2 2 216 0 8 973 360 0 0 0 chr11 50955394 50955434 -70888422 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 973 819 26 17 9 chr11 50955645 50955760 -70888096 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 8 973 1765 117 84 0 chr11 50957217 50957515 -70886341 - IAPEY2_LTR LTR ERVK 0 357 35 8 973 56257 93 12 6 chr11 50957523 50965158 -70878698 - IAPEY3-int LTR ERVK 0 7680 1 8 973 1712 134 80 0 chr11 50965158 50965457 -70878399 - IAPEY2_LTR LTR ERVK 0 357 35 8 973 1070 292 58 24 chr11 50965910 50966492 -70877364 + L1MA4 LINE L1 5693 6294 -6 8 973 545 261 0 6 chr11 50966683 50966864 -70876992 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 973 192 24 91 45 chr11 50967213 50967257 -70876599 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 8 973 22 0 0 0 chr11 50967335 50967357 -70876499 + AT_rich Low_complexity Low_complexity 1 22 0 8 973 80 11 0 0 chr11 50968793 50968880 -70874976 + AT_rich Low_complexity Low_complexity 1 87 0 8 973 223 231 152 15 chr11 50968998 50969073 -70874783 + PB1D10 SINE Alu 13 98 -51 8 973 293 118 147 0 chr11 50969085 50969153 -70874703 + L1M2 LINE L1 2377 2454 -3689 8 973 21 0 0 0 chr11 50969170 50969191 -70874665 + AT_rich Low_complexity Low_complexity 1 21 0 8 973 213 39 0 0 chr11 50969191 50969217 -70874639 + (TTA)n Simple_repeat Simple_repeat 2 27 0 8 973 651 117 39 0 chr11 50969230 50969333 -70874523 - B1_Mus2 SINE Alu -10 137 31 8 973 267 203 46 15 chr11 50969281 50969346 -70874510 - MT2B LTR ERVL -362 239 173 8 973 852 305 39 15 chr11 50969346 50969679 -70874177 + L1M2 LINE L1 2451 2791 -3352 8 973 4372 199 75 75 chr11 50969673 50970734 -70873122 - RMER1B Other Other -2 1064 3 8 973 6338 50 20 38 chr11 50971118 50971955 -70871901 - RLTR13B2 LTR ERVK 0 822 1 8 973 666 214 0 23 chr11 50972052 50972181 -70871675 + B1_Mur4 SINE Alu 2 127 -23 8 973 574 264 66 48 chr11 50972407 50972569 -70871287 + ID_B1 SINE B4 3 167 -57 8 973 4190 127 75 39 chr11 50972569 50973443 -70870413 + RMER17A2 LTR ERVK 1 906 0 8 973 5013 54 2 10 chr11 50973668 50974336 -70869520 + L1_Mus1 LINE L1 5948 6567 0 8 973 498 251 33 28 chr11 50974357 50974570 -70869286 + L1M2 LINE L1 5270 5483 -817 8 973 1172 226 22 119 chr11 50974601 50975013 -70868843 + MTE2a LTR MaLR 8 379 0 8 973 1123 75 0 20 chr11 50975305 50975444 -70868412 + B1_Mus2 SINE Alu 1 139 -8 8 973 212 0 36 0 chr11 50975444 50975472 -70868384 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 973 255 103 0 0 chr11 50975496 50975535 -70868321 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 8 973 467 73 15 0 chr11 50976953 50977021 -70866835 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 973 631 297 0 7 chr11 50977154 50977303 -70866553 - RSINE1 SINE B4 -14 151 4 8 973 1996 109 74 9 chr11 50977513 50977837 -70866019 - Lx4A LINE L1 -1 7057 6713 8 973 414 0 0 0 chr11 50977931 50977977 -70865879 + (CAAAT)n Simple_repeat Simple_repeat 1 46 0 8 973 3785 204 82 28 chr11 50978208 50979383 -70864473 + RMER1A Other Other 1 1030 0 8 973 928 302 129 91 chr11 50979692 50980682 -70863174 - L1M4 LINE L1 -1705 4441 3414 8 973 538 283 80 72 chr11 50980699 50980932 -70862924 - L1M3 LINE L1 -1655 4485 4242 8 973 321 89 0 0 chr11 50980932 50980977 -70862879 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 973 538 283 80 72 chr11 50980977 50981116 -70862740 - L1M3 LINE L1 -1899 4241 4110 8 973 670 247 25 12 chr11 50981300 50981460 -70862396 + B3A SINE B2 36 197 -1 8 973 427 283 63 74 chr11 50981476 50981822 -70862034 + L1MC1 LINE L1 5879 6228 -116 8 973 268 250 14 68 chr11 50981831 50981904 -70861952 + ID4_ SINE ID 8 76 -7 8 973 366 171 0 0 chr11 50981930 50982000 -70861856 + GA-rich Low_complexity Low_complexity 3 72 0 8 973 4174 17 6 0 chr11 50982062 50982529 -70861327 - L1Md_F2 LINE L1 -3 6579 6110 8 973 30 27 0 0 chr11 50982646 50982683 -70861173 + AT_rich Low_complexity Low_complexity 1 37 0 8 973 283 297 5 0 chr11 50982801 50982885 -70860971 + MIRb SINE MIR 23 111 -157 8 973 494 315 136 42 chr11 50982893 50983279 -70860577 - MER67A LTR ERV1 -74 469 44 8 973 701 223 14 0 chr11 50983279 50983418 -70860438 + B1_Mur2 SINE Alu 1 141 -8 8 973 494 315 136 42 chr11 50983418 50983458 -70860398 - MER67A LTR ERV1 -500 43 3 8 973 198 0 0 0 chr11 50983518 50983540 -70860316 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 8 973 246 62 0 0 chr11 50984477 50984509 -70859347 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 8 973 650 190 74 0 chr11 50984526 50984647 -70859209 - B1_Mur4 SINE Alu -17 133 4 8 973 374 262 12 0 chr11 50984692 50984776 -70859080 + B1_Mur4 SINE Alu 4 88 -62 8 973 379 103 0 17 chr11 50985077 50985136 -70858720 + B1_Mur1 SINE Alu 74 131 -18 8 973 506 141 32 21 chr11 50985378 50985472 -70858384 - MTC LTR MaLR -326 95 1 8 973 354 267 121 46 chr11 50985572 50985745 -70858111 - MLT1D LTR MaLR -181 324 139 8 973 975 119 0 0 chr11 50986123 50986257 -70857599 + B1_Mus2 SINE Alu 2 135 -12 8 973 243 0 0 0 chr11 50986257 50986284 -70857572 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 973 826 164 7 0 chr11 50986503 50986643 -70857213 + B1_Mus2 SINE Alu 7 147 0 8 121 1038 236 58 114 chr11 50986853 50987249 -70856607 + MTE2a LTR MaLR 6 379 0 8 974 183 333 0 0 chr11 50987647 50987704 -70856152 + MIRm SINE MIR 91 147 -129 8 974 1111 172 103 5 chr11 50987798 50988002 -70855854 + URR1B DNA MER1_type 2 225 0 8 974 489 71 0 0 chr11 50988073 50988143 -70855713 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 974 219 342 0 0 chr11 50989444 50989564 -70854292 + (CAG)n Simple_repeat Simple_repeat 3 122 0 8 974 282 339 0 0 chr11 50989579 50989750 -70854106 + (CAG)n Simple_repeat Simple_repeat 3 173 0 8 974 366 245 0 0 chr11 50990781 50990875 -70852981 + G-rich Low_complexity Low_complexity 5 98 0 8 974 1416 108 242 56 chr11 50991468 50991753 -70852103 + Lx4A LINE L1 6721 7058 0 8 974 35 0 0 0 chr11 50991753 50991788 -70852068 + AT_rich Low_complexity Low_complexity 1 35 0 8 974 414 314 15 75 chr11 50991791 50992082 -70851774 + L1MD2 LINE L1 5828 6106 -73 8 974 408 263 16 41 chr11 50992173 50992233 -70851623 - PB1D9 SINE Alu 0 120 65 8 974 657 38 0 0 chr11 50992233 50992313 -70851543 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 974 408 263 16 41 chr11 50992313 50992375 -70851481 - PB1D9 SINE Alu -56 64 2 8 974 991 130 7 0 chr11 50992394 50992540 -70851316 - B1_Mus1 SINE Alu -1 147 1 8 974 186 43 0 0 chr11 50992928 50992951 -70850905 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 974 391 127 14 0 chr11 50993368 50993439 -70850417 + B2_Mm2 SINE B2 102 173 -22 8 974 315 0 0 0 chr11 50993439 50993474 -70850382 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 8 974 633 218 184 19 chr11 50993581 50993840 -70850016 - MT2A LTR ERVL -90 443 90 8 974 989 205 0 10 chr11 50993843 50994035 -70849821 - MERVL_2A-int LTR ERVL -499 5262 5073 8 974 409 255 58 10 chr11 50994053 50994156 -70849700 - MERVL_2A-int LTR ERVL -755 5006 4899 8 974 279 0 0 0 chr11 50994158 50994189 -70849667 + (TA)n Simple_repeat Simple_repeat 1 31 0 8 974 554 0 15 0 chr11 50994189 50994254 -70849602 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 974 25 0 0 0 chr11 50994254 50994279 -70849577 + AT_rich Low_complexity Low_complexity 1 25 0 8 974 356 285 70 32 chr11 50994425 50994581 -70849275 - Lx7 LINE L1 -329 7367 7206 8 974 3202 216 74 20 chr11 50994665 50995381 -70848475 - Lx6 LINE L1 -168 7292 6538 8 974 1109 190 139 72 chr11 50995399 50995585 -70848271 + ORR1D1 LTR MaLR 1 175 -199 8 974 585 0 0 0 chr11 50995585 50995650 -70848206 + (TC)n Simple_repeat Simple_repeat 2 66 0 8 974 1109 190 139 72 chr11 50995650 50995809 -70848047 + ORR1D1 LTR MaLR 176 368 -6 8 974 768 275 41 125 chr11 50995807 50996152 -70847704 + MER74A LTR ERVL 37 352 -206 8 974 1017 231 114 13 chr11 50997077 50997392 -70846464 - ORR1D2 LTR MaLR -9 361 15 8 974 257 128 0 21 chr11 50997580 50997628 -70846228 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 8 974 563 282 49 0 chr11 50998155 50998297 -70845559 + B1F SINE Alu 1 149 0 8 974 509 204 7 0 chr11 50998386 50998533 -70845323 + GA-rich Low_complexity Low_complexity 2 149 0 8 974 299 191 0 14 chr11 50998517 50998567 -70845289 + polypurine Low_complexity Low_complexity 1 50 0 8 974 219 103 0 0 chr11 50998567 50998606 -70845250 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 974 299 191 0 14 chr11 50998606 50998624 -70845232 + polypurine Low_complexity Low_complexity 51 68 0 8 974 2604 138 53 12 chr11 50998842 50999332 -70844524 + RLTR28 LTR ERVL 1 510 -14 8 974 976 224 60 0 chr11 50999557 50999758 -70844098 + ID_B1 SINE B4 1 213 -11 8 974 337 222 9 18 chr11 50999758 50999868 -70843988 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 8 974 420 71 0 0 chr11 51000692 51000748 -70843108 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 974 40 37 0 0 chr11 51000789 51000843 -70843013 + AT_rich Low_complexity Low_complexity 1 54 0 2 974 452 293 33 20 chr11 51000871 51001024 -70842832 - L1M4 LINE L1 -1144 5002 4848 3 974 522 262 64 41 chr11 51001010 51001181 -70842675 + L1M4c LINE L1 4 178 -6206 4 974 1065 37 0 0 chr11 51001329 51001463 -70842393 + (TC)n Simple_repeat Simple_repeat 1 134 0 5 974 513 0 0 0 chr11 51001463 51001519 -70842337 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 974 265 287 75 0 chr11 51002097 51002191 -70841665 - PB1D10 SINE Alu 0 117 17 7 974 299 247 23 23 chr11 51002691 51002778 -70841078 + PB1D7 SINE Alu 21 107 -13 8 974 657 47 0 0 chr11 51002779 51002864 -70840992 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 9 974 1743 72 42 12 chr11 51002864 51003104 -70840752 + L1Md_F2 LINE L1 6326 6572 -10 1 974 353 193 112 11 chr11 51003109 51003198 -70840658 + PB1D10 SINE Alu 5 102 -15 1 974 270 0 0 0 chr11 51004395 51004425 -70839431 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 974 204 40 0 0 chr11 51004483 51004508 -70839348 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 974 412 285 32 53 chr11 51004508 51004523 -70839333 - B2_Mm2 SINE B2 -18 177 163 1 974 279 0 0 0 chr11 51004523 51004554 -70839302 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 1 974 682 250 67 0 chr11 51004554 51004718 -70839138 - B3 SINE B2 -41 175 1 1 974 26 30 0 0 chr11 51006204 51006237 -70837619 + AT_rich Low_complexity Low_complexity 1 33 0 1 974 48 0 0 0 chr11 51006363 51006411 -70837445 + AT_rich Low_complexity Low_complexity 1 48 0 1 974 883 254 44 48 chr11 51006674 51006967 -70836889 - B4A SINE B4 0 292 1 1 974 287 328 25 49 chr11 51006973 51007095 -70836761 - PB1D7 SINE Alu 0 120 2 2 974 216 0 0 0 chr11 51007114 51007138 -70836718 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 974 869 132 8 0 chr11 51008709 51008838 -70835018 + B3 SINE B2 1 130 -86 2 974 617 313 111 45 chr11 51008945 51009113 -70834743 + L1_Mur3 LINE L1 1243 1426 -4454 2 974 1142 82 0 0 chr11 51009113 51009260 -70834596 + B1_Mus1 SINE Alu 2 148 0 2 974 617 313 111 45 chr11 51009260 51009806 -70834050 + L1_Mur3 LINE L1 1427 2003 -3877 2 974 414 290 100 60 chr11 51009806 51010083 -70833773 + RLTR11A2 LTR ERVK 1 283 -170 2 974 721 358 45 18 chr11 51010337 51010937 -70832919 + L1_Mur3 LINE L1 2080 2695 -3185 2 974 29 28 0 0 chr11 51011206 51011242 -70832614 + AT_rich Low_complexity Low_complexity 1 36 0 2 974 1428 278 53 75 chr11 51011248 51011990 -70831866 + L1M2 LINE L1 3970 4694 -1449 2 974 264 59 0 0 chr11 51012224 51012258 -70831598 + (A)n Simple_repeat Simple_repeat 1 34 0 2 974 207 162 0 0 chr11 51012525 51012562 -70831294 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 2 974 244 253 181 0 chr11 51014196 51014279 -70829577 + B3A SINE B2 1 98 -100 3 974 469 276 134 47 chr11 51015182 51015340 -70828516 + RMER15 LTR ERVL 275 454 -121 3 974 1213 41 7 0 chr11 51015340 51015485 -70828371 + B1_Mm SINE Alu 1 146 -1 3 974 693 0 0 0 chr11 51015486 51015563 -70828293 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 3 974 469 276 134 47 chr11 51015563 51015679 -70828177 + RMER15 LTR ERVL 455 575 0 3 974 400 147 0 51 chr11 51015738 51015817 -70828039 - RLTR28 LTR ERVL -443 81 7 3 974 2382 137 19 9 chr11 51015859 51016280 -70827576 + RLTR31_Mm LTR ERVK 137 561 0 3 974 1589 207 83 43 chr11 51016280 51016785 -70827071 + RMER3D-int LTR ERVK 1 850 -1992 3 974 430 112 4 4 chr11 51016868 51016945 -70826911 + RMER3D-int LTR ERVK 485 540 -2302 3 974 6481 174 52 50 chr11 51016944 51018417 -70825439 + RMER3D-int LTR ERVK 1158 2634 -208 3 974 329 89 0 118 chr11 51018409 51018485 -70825371 + RMER3D-int LTR ERVK 2774 2840 -2 3 974 1972 111 17 40 chr11 51018487 51018835 -70825021 + RLTR31_Mm LTR ERVK 1 340 -221 3 974 3763 70 19 0 chr11 51018841 51019355 -70824501 + MusHAL1 LINE L1 697 1220 -1492 3 974 287 77 0 0 chr11 51019352 51019404 -70824452 + MusHAL1 LINE L1 2661 2712 0 3 974 291 255 101 88 chr11 51019478 51019706 -70824150 - MLT1C LTR MaLR -4 463 156 3 974 266 172 28 50 chr11 51020031 51020172 -70823684 + (CAGAGA)n Simple_repeat Simple_repeat 5 142 0 3 974 285 302 66 16 chr11 51020207 51020328 -70823528 - ORR1E LTR MaLR -227 132 6 4 974 865 304 50 11 chr11 51020843 51021122 -70822734 + B4 SINE B4 1 290 -2 4 974 187 222 0 0 chr11 51021454 51021490 -70822366 + L2 LINE L2 1316 1351 -2068 4 974 207 328 104 0 chr11 51022367 51022501 -70821355 + L2 LINE L2 2306 2453 -966 4 974 570 282 161 26 chr11 51022719 51022992 -70820864 - MER2 DNA MER2_type -7 338 29 4 974 1235 254 47 80 chr11 51023128 51023905 -70819951 + RMER12 LTR ERVK 3 759 -1089 4 974 908 251 77 83 chr11 51023998 51024505 -70819351 + RMER12 LTR ERVK 796 1498 -350 4 974 3207 39 5 8 chr11 51024516 51024909 -70818947 + L1Md_F3 LINE L1 6181 6572 -12 4 974 235 285 117 44 chr11 51025387 51025567 -70818289 - B3A SINE B2 0 198 6 4 974 1917 168 78 3 chr11 51025817 51026199 -70817657 + MTC LTR MaLR 1 411 -10 4 974 1109 194 15 0 chr11 51026208 51026404 -70817452 - B3 SINE B2 -17 199 1 4 974 810 300 93 23 chr11 51026427 51026823 -70817033 - L1M2 LINE L1 -514 5786 5363 5 974 416 273 48 113 chr11 51026957 51027188 -70816668 - B4A SINE B4 -75 217 2 5 974 390 273 139 17 chr11 51027242 51027529 -70816327 - L1M2 LINE L1 -825 5318 4997 5 974 403 288 110 18 chr11 51027721 51027940 -70815916 - ORR1E LTR MaLR -115 244 6 5 974 654 235 61 6 chr11 51028274 51028454 -70815402 - ORR1E LTR MaLR -163 196 7 5 974 332 291 10 10 chr11 51029516 51029620 -70814236 + GA-rich Low_complexity Low_complexity 3 106 0 5 974 465 19 0 0 chr11 51029770 51029824 -70814032 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 974 258 32 0 0 chr11 51029824 51029854 -70814002 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 974 550 260 58 106 chr11 51030053 51030242 -70813614 - B3A SINE B2 0 198 19 5 974 1430 299 73 72 chr11 51030474 51031298 -70812558 - MTE-int LTR MaLR -613 967 143 5 974 701 215 0 8 chr11 51031310 51031441 -70812415 + B3 SINE B2 1 130 -86 5 974 207 151 38 0 chr11 51031478 51031531 -70812325 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 6 974 302 155 0 0 chr11 51031542 51031600 -70812256 - MTE-int LTR MaLR -1450 130 73 5 974 2339 123 28 14 chr11 51031717 51032079 -70811777 - ORR1B2 LTR MaLR 0 367 1 6 974 1041 272 15 50 chr11 51032098 51032435 -70811421 - MYSERV-int LTR ERVK -2451 4099 3775 6 974 33 0 0 0 chr11 51032879 51032912 -70810944 + AT_rich Low_complexity Low_complexity 1 33 0 6 974 473 211 102 82 chr11 51033723 51034017 -70809839 - RLTR15 LTR ERVK -15 344 45 6 974 680 211 0 0 chr11 51034099 51034232 -70809624 + B1_Mur2 SINE Alu 6 138 -11 6 974 3547 241 69 24 chr11 51034242 51035143 -70808713 + Lx6 LINE L1 6515 7455 -5 6 974 249 278 0 58 chr11 51035229 51035332 -70808524 + CT-rich Low_complexity Low_complexity 5 101 0 6 974 334 266 44 35 chr11 51037420 51037533 -70806323 + B1F SINE Alu 35 148 -1 6 974 362 282 58 44 chr11 51037728 51037865 -70805991 + ID_B1 SINE B4 80 218 -6 6 974 515 269 20 27 chr11 51039856 51040005 -70803851 + B1_Mur1 SINE Alu 2 149 0 7 974 339 296 0 69 chr11 51040011 51040127 -70803729 + B3 SINE B2 2 109 -107 7 974 531 45 0 0 chr11 51040217 51040283 -70803573 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 7 974 1235 34 0 0 chr11 51040297 51040444 -70803412 + B1_Mus2 SINE Alu 1 147 0 7 974 842 126 14 0 chr11 51040444 51040587 -70803269 + (GAAAA)n Simple_repeat Simple_repeat 4 148 0 7 974 350 247 11 11 chr11 51040593 51040687 -70803169 + MTB_Mm LTR MaLR 314 407 0 7 974 2495 209 52 12 chr11 51040725 51041296 -70802560 - MERVL_2A-int LTR ERVL -5062 699 106 7 974 1037 205 21 13 chr11 51041296 51041533 -70802323 - MTC-int LTR MaLR -373 885 647 7 974 31 44 0 0 chr11 51042620 51042665 -70801191 + AT_rich Low_complexity Low_complexity 1 45 0 7 974 484 252 73 0 chr11 51042884 51043007 -70800849 + B1_Mur1 SINE Alu 9 140 -9 7 974 542 245 22 42 chr11 51043023 51043191 -70800665 + B3 SINE B2 4 171 -45 8 974 235 259 96 72 chr11 51043971 51044096 -70799760 + ID_B1 SINE B4 86 213 -11 8 974 257 27 0 51 chr11 51044096 51044135 -70799721 + (TAA)n Simple_repeat Simple_repeat 2 38 0 8 974 1252 61 0 0 chr11 51044166 51044330 -70799526 + B2_Mm2 SINE B2 1 164 -31 8 974 205 138 0 0 chr11 51044331 51044360 -70799496 + (GGA)n Simple_repeat Simple_repeat 2 30 0 8 974 322 248 109 65 chr11 51045043 51045181 -70798675 + B1_Mm SINE Alu 3 146 -1 8 974 609 238 68 105 chr11 51045192 51045618 -70798238 + MT2B2 LTR ERVL 4 533 -51 8 974 401 110 14 0 chr11 51045618 51045691 -70798165 + (TA)n Simple_repeat Simple_repeat 2 75 0 8 974 609 246 88 112 chr11 51045691 51045742 -70798114 + MT2B2 LTR ERVL 534 582 -2 8 974 335 224 60 13 chr11 51045774 51045870 -70797986 - B1F1 SINE Alu 0 127 21 8 974 224 283 46 92 chr11 51046417 51046569 -70797287 - ID_B1 SINE B4 0 224 80 8 974 237 257 89 83 chr11 51048971 51049128 -70794728 + ORR1D2 LTR MaLR 2 159 -211 9 974 324 48 0 0 chr11 51049135 51049177 -70794679 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 9 974 262 155 92 66 chr11 51049241 51049317 -70794539 + ERVL-B4-int LTR ERVL 4808 4885 -829 9 974 585 307 62 64 chr11 51050554 51050901 -70792955 - MurERV4-int LTR ERVK -2294 2966 2550 9 974 13119 220 70 105 chr11 51051330 51052633 -70791223 - Lx5 LINE L1 -19 7031 5782 9 974 3035 48 5 0 chr11 51052633 51053006 -70790850 - L1_Mus1 LINE L1 -1 6566 6192 9 974 13119 169 52 35 chr11 51053006 51054122 -70789734 - Lx5 LINE L1 -96 5781 4632 9 974 279 0 0 0 chr11 51054122 51054153 -70789703 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 974 13119 169 52 35 chr11 51054153 51055511 -70788345 - Lx5 LINE L1 -1246 4631 3226 9 974 549 0 0 0 chr11 51055511 51055572 -70788284 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 974 13119 169 52 35 chr11 51055572 51055657 -70788199 - Lx5 LINE L1 -2652 3225 3141 9 974 475 132 13 0 chr11 51055665 51055741 -70788115 - MT2B LTR ERVL -524 77 1 9 974 6836 197 20 19 chr11 51055741 51057130 -70786726 - MurERV4-int LTR ERVK -1321 3939 2099 9 974 399 41 0 0 chr11 51057130 51057179 -70786677 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 974 6836 254 24 28 chr11 51057179 51057244 -70786612 - MurERV4-int LTR ERVK -2709 2551 2486 9 974 410 71 0 0 chr11 51057244 51057300 -70786556 + L1Md_F2 LINE L1 6515 6570 -12 1 974 6836 275 41 37 chr11 51057300 51058623 -70785233 - MurERV4-int LTR ERVK -2775 2485 671 9 974 619 182 57 12 chr11 51058625 51058770 -70785086 + ORR1A1 LTR MaLR 1 179 -195 1 974 1795 280 59 74 chr11 51058770 51059527 -70784329 - RodERV21-int LTR ERV1 -3518 1473 728 1 974 342 276 83 120 chr11 51059554 51059830 -70784026 - MurERV4-int LTR ERVK -2754 484 219 9 974 343 65 0 0 chr11 51059947 51059993 -70783863 + ORR1A3 LTR MaLR 281 326 0 1 974 282 111 0 0 chr11 51059994 51060039 -70783817 + ORR1A3-int LTR MaLR 2 46 -1463 1 974 1895 118 16 19 chr11 51060017 51060327 -70783529 - ORR1A2 LTR MaLR -18 309 1 1 974 1329 204 114 2 chr11 51060327 51060666 -70783190 - RMER19A LTR ERVK -326 411 1 1 974 2180 281 65 29 chr11 51060670 51061581 -70782275 - MYSERV6-int LTR ERVK -7690 1269 326 1 974 223 280 37 9 chr11 51061585 51061693 -70782163 + T-rich Low_complexity Low_complexity 1 111 0 1 974 1106 82 0 33 chr11 51062049 51062201 -70781655 - B1_Mus1 SINE Alu -1 147 1 1 974 777 51 0 0 chr11 51063711 51063809 -70780047 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 1 974 231 259 47 47 chr11 51064909 51064994 -70778862 + PB1D10 SINE Alu 22 106 -11 1 974 344 259 120 15 chr11 51065045 51065178 -70778678 - B1_Mur2 SINE Alu -1 148 2 1 974 2179 174 35 37 chr11 51065583 51065771 -70778085 - RMER1C Other Other -1 1341 1163 1 974 2999 129 54 15 chr11 51065771 51066249 -70777607 + RLTR19 LTR ERVK 1 497 -2 1 974 2179 174 35 37 chr11 51066249 51066519 -70777337 - RMER1C Other Other -180 1162 884 1 974 1452 197 30 106 chr11 51066520 51066639 -70777217 - RLTR33 LTR ERVK 0 678 557 1 974 1153 55 7 7 chr11 51066639 51066785 -70777071 + B1_Mus2 SINE Alu 2 147 0 1 974 1452 197 30 106 chr11 51066785 51067034 -70776822 - RLTR33 LTR ERVK -122 556 338 1 974 306 290 55 31 chr11 51069164 51069292 -70774564 + ID_B1 SINE B4 94 224 0 1 974 462 284 7 41 chr11 51069926 51070073 -70773783 - B1_Mur2 SINE Alu -5 144 3 1 974 398 320 8 0 chr11 51070639 51070764 -70773092 - ID_B1 SINE B4 -6 218 93 1 974 222 159 23 0 chr11 51070923 51070967 -70772889 + T-rich Low_complexity Low_complexity 3 47 0 1 974 620 253 34 0 chr11 51071155 51071301 -70772555 + Lx6 LINE L1 7010 7160 -300 1 974 1224 72 17 6 chr11 51071303 51071484 -70772372 - B2_Mm2 SINE B2 0 195 13 1 974 302 198 111 0 chr11 51071659 51071740 -70772116 - PB1 SINE Alu -14 113 24 1 974 392 259 0 35 chr11 51071751 51071867 -70771989 - L1MB3 LINE L1 -44 6139 6028 1 974 746 250 107 45 chr11 51071870 51072159 -70771697 + Lx6 LINE L1 7146 7452 -8 1 974 201 74 0 0 chr11 51072486 51072513 -70771343 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 974 372 177 281 0 chr11 51073430 51073526 -70770330 + RMER6B LTR ERVK 12 134 -327 1 974 1074 172 183 52 chr11 51073526 51073875 -70769981 + RMER6B LTR ERVK 67 461 0 1 974 228 227 0 0 chr11 51073875 51073918 -70769938 - ID SINE ID -165 59 17 1 974 481 224 31 16 chr11 51073980 51074107 -70769749 - ID_B1 SINE B4 -3 221 93 1 974 652 278 0 0 chr11 51074186 51074330 -70769526 + RSINE1 SINE B4 2 145 -20 1 974 265 328 23 38 chr11 51074654 51074684 -70769172 + ID SINE ID 52 79 -145 1 974 407 316 0 3 chr11 51074684 51074809 -70769047 + B1F SINE Alu 2 124 -23 1 974 729 211 0 7 chr11 51075611 51075759 -70768097 - ID_B1 SINE B4 -1 223 77 1 974 1122 83 0 7 chr11 51075797 51075943 -70767913 + B1_Mus1 SINE Alu 2 146 -2 1 974 217 245 19 0 chr11 51076078 51076131 -70767725 + GA-rich Low_complexity Low_complexity 2 55 0 1 974 445 163 54 0 chr11 51077330 51077422 -70766434 - B1F2 SINE Alu -30 119 23 1 974 393 226 111 19 chr11 51077824 51077932 -70765924 - PB1D9 SINE Alu -2 118 1 1 974 306 0 0 0 chr11 51078525 51078559 -70765297 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 974 26 30 0 0 chr11 51079140 51079173 -70764683 + AT_rich Low_complexity Low_complexity 1 33 0 1 974 259 195 0 0 chr11 51079216 51079257 -70764599 + RSINE1 SINE B4 61 101 -64 1 974 653 188 78 21 chr11 51079618 51079759 -70764097 + B1_Mur4 SINE Alu 2 150 0 1 974 1065 231 49 19 chr11 51079932 51080197 -70763659 - B4A SINE B4 -18 274 2 1 974 718 200 14 7 chr11 51080240 51080386 -70763470 + B1_Mus2 SINE Alu 1 147 0 1 974 237 252 9 54 chr11 51081058 51081124 -70762732 + ID4 SINE ID 5 70 -13 1 974 392 287 58 14 chr11 51082273 51082411 -70761445 - L1M5 LINE L1 -426 5698 5555 1 974 216 97 0 0 chr11 51083206 51083237 -70760619 + (T)n Simple_repeat Simple_repeat 1 31 0 1 974 369 0 0 0 chr11 51083239 51083280 -70760576 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 974 793 211 7 0 chr11 51083955 51084107 -70759749 + 7SK RNA RNA 18 170 -161 1 974 435 234 39 46 chr11 51084164 51084294 -70759562 + Charlie4z DNA MER1_type 13 141 -26 1 974 637 216 16 0 chr11 51084971 51085096 -70758760 - ID_B1 SINE B4 0 224 98 1 974 278 247 103 39 chr11 51087541 51087697 -70756159 - Charlie2b DNA MER1_type -68 2714 2549 1 974 468 242 23 61 chr11 51088505 51088637 -70755219 + B1F SINE Alu 22 148 -1 1 974 1041 95 0 0 chr11 51090460 51090608 -70753248 + B2_Mm2 SINE B2 5 152 -43 1 974 597 28 0 0 chr11 51090616 51090687 -70753169 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1 974 243 107 53 18 chr11 51090689 51090746 -70753110 + GA-rich Low_complexity Low_complexity 4 62 0 1 974 218 270 127 0 chr11 51090947 51091010 -70752846 + B1F SINE Alu 21 91 -58 1 974 1734 26 0 0 chr11 51091113 51091306 -70752550 + B2_Mm1t SINE B2 1 193 0 1 974 21 82 0 0 chr11 51091676 51091725 -70752131 + AT_rich Low_complexity Low_complexity 1 49 0 1 974 389 276 102 0 chr11 51091815 51091942 -70751914 + B1F1 SINE Alu 3 142 -7 1 974 3759 34 0 7 chr11 51092175 51092623 -70751233 - L1Md_F2 LINE L1 -5 6577 6133 1 974 1279 111 32 0 chr11 51092647 51092836 -70751020 + B2_Mm2 SINE B2 1 195 0 1 974 3572 15 2 0 chr11 51092989 51093384 -70750472 - MTA_Mm LTR MaLR 0 396 1 1 974 357 248 198 9 chr11 51093646 51093752 -70750104 - RSINE1 SINE B4 -29 136 11 1 974 21 0 0 0 chr11 51093783 51093804 -70750052 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 334 266 192 43 chr11 51096038 51096199 -70747657 + B3A SINE B2 2 186 -12 1 974 213 213 0 0 chr11 51096602 51096649 -70747207 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 974 27 29 0 0 chr11 51096900 51096934 -70746922 + AT_rich Low_complexity Low_complexity 1 34 0 1 974 287 220 17 0 chr11 51096961 51097020 -70746836 + RSINE1 SINE B4 3 62 -103 1 974 243 234 15 59 chr11 51097442 51097510 -70746346 - PB1D7 SINE Alu -8 112 48 1 974 566 227 15 8 chr11 51097566 51097699 -70746157 - ID_B1 SINE B4 -1 223 90 1 974 272 217 0 115 chr11 51097890 51097968 -70745888 - PB1D10 SINE Alu -31 86 18 1 974 2374 125 102 11 chr11 51097976 51098428 -70745428 - RLTR28 LTR ERVL -31 493 1 1 974 394 210 117 49 chr11 51098542 51098747 -70745109 - L1MEc LINE L1 -4888 1512 1294 1 974 343 286 141 16 chr11 51098889 51099017 -70744839 - B4A SINE B4 -141 151 8 1 974 772 171 133 0 chr11 51099034 51099192 -70744664 - B3 SINE B2 -11 205 27 1 974 516 32 0 0 chr11 51099217 51099279 -70744577 + (CTTG)n Simple_repeat Simple_repeat 2 63 0 1 974 575 97 136 0 chr11 51099281 51099384 -70744472 - B1_Mus1 SINE Alu -10 138 22 1 974 268 211 50 109 chr11 51099301 51099402 -70744454 - MT2B LTR ERVL -338 263 169 1 974 840 169 0 20 chr11 51099405 51099556 -70744300 - B3 SINE B2 -67 149 2 1 974 309 244 182 8 chr11 51099842 51099974 -70743882 - L1MEc LINE L1 -5676 724 570 1 974 480 293 94 72 chr11 51101406 51101726 -70742130 + LTR33 LTR ERVL 187 513 -2 1 974 230 320 64 0 chr11 51101796 51101874 -70741982 - L2a LINE L2 -4 3422 3340 1 974 277 313 0 20 chr11 51102976 51103077 -70740779 + CT-rich Low_complexity Low_complexity 4 102 0 1 974 332 295 32 32 chr11 51104492 51104618 -70739238 + B1F1 SINE Alu 1 126 -23 1 974 396 0 0 0 chr11 51104618 51104662 -70739194 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 974 574 150 208 0 chr11 51104672 51104792 -70739064 + B1_Mur2 SINE Alu 5 149 0 1 974 603 27 0 0 chr11 51105715 51105788 -70738068 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 1 974 324 227 0 25 chr11 51105859 51105981 -70737875 + CT-rich Low_complexity Low_complexity 3 121 0 1 974 576 262 0 41 chr11 51106031 51106178 -70737678 - B1_Mur1 SINE Alu -7 142 2 1 974 209 229 21 0 chr11 51108700 51108748 -70735108 + CT-rich Low_complexity Low_complexity 2 50 0 1 974 309 268 52 0 chr11 51108797 51108894 -70734962 + MLT1A1 LTR MaLR 295 396 -12 1 974 541 259 30 0 chr11 51108903 51109034 -70734822 - B1F SINE Alu -13 136 2 1 974 352 271 185 38 chr11 51109318 51109529 -70734327 - MLT1L LTR MaLR -347 263 22 1 974 233 275 112 0 chr11 51109796 51109876 -70733980 - MLT1A1 LTR MaLR -12 396 308 1 974 633 134 17 67 chr11 51110093 51110213 -70733643 - B1_Mus2 SINE Alu -11 136 23 1 974 357 249 98 165 chr11 51110614 51110869 -70732987 - MTE2b LTR MaLR -141 238 1 1 974 229 214 18 0 chr11 51110873 51110929 -70732927 - PB1D10 SINE Alu -26 91 35 1 974 1227 29 0 0 chr11 51111542 51111680 -70732176 + B1_Mus1 SINE Alu 1 138 -10 1 974 363 23 0 0 chr11 51111694 51111738 -70732118 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 1 974 732 259 12 41 chr11 51111745 51111914 -70731942 - RSINE1 SINE B4 0 165 2 1 974 615 322 93 8 chr11 51112329 51112586 -70731270 - MER31A LTR ERV1 -16 469 191 1 974 347 324 86 27 chr11 51112617 51112839 -70731017 + ORR1E LTR MaLR 20 254 -105 2 974 495 0 0 0 chr11 51112915 51112970 -70730886 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2 974 214 240 0 0 chr11 51112970 51113009 -70730847 + polypyrimidine Low_complexity Low_complexity 4 42 0 2 974 792 228 47 16 chr11 51113031 51113223 -70730633 - B3A SINE B2 0 198 1 2 974 787 217 69 94 chr11 51113245 51113448 -70730408 - B3A SINE B2 0 198 1 2 974 404 311 16 8 chr11 51113562 51113685 -70730171 - MER31A LTR ERV1 -360 125 2 1 974 312 258 15 0 chr11 51113730 51113796 -70730060 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 2 974 451 281 77 28 chr11 51114158 51114301 -70729555 - MER2 DNA MER2_type -116 229 80 2 974 246 240 25 62 chr11 51114319 51114399 -70729457 - RSINE1 SINE B4 -2 163 87 2 974 974 251 134 17 chr11 51114417 51114770 -70729086 + MTE2a LTR MaLR 10 405 -14 2 974 240 163 0 0 chr11 51114972 51115015 -70728841 + T-rich Low_complexity Low_complexity 1 43 0 2 974 338 304 43 9 chr11 51115086 51115202 -70728654 - PB1D9 SINE Alu 0 120 1 2 974 1193 197 10 5 chr11 51115456 51115665 -70728191 - B3 SINE B2 -4 212 3 2 974 873 253 319 3 chr11 51115959 51116272 -70727584 + MTD LTR MaLR 1 412 -7 2 974 655 87 9 9 chr11 51116561 51116666 -70727190 + (TTCC)n Simple_repeat Simple_repeat 2 106 0 2 974 795 228 0 0 chr11 51116666 51116815 -70727041 - B1_Mur4 SINE Alu -1 149 1 2 974 325 274 7 173 chr11 51116968 51117118 -70726738 - RSINE1 SINE B4 -38 127 3 2 974 550 304 66 6 chr11 51117684 51117866 -70725990 + MIRb SINE MIR 11 203 -65 2 121 347 248 178 74 chr11 51118005 51118140 -70725716 + B1F1 SINE Alu 1 149 0 2 975 1192 62 7 0 chr11 51118355 51118501 -70725355 + B1_Mus2 SINE Alu 1 147 0 2 975 293 333 0 48 chr11 51119146 51119335 -70724521 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 975 1159 269 102 3 chr11 51119857 51120211 -70723645 - MLT1B LTR MaLR -1 389 1 2 975 23 0 0 0 chr11 51120447 51120470 -70723386 + AT_rich Low_complexity Low_complexity 1 23 0 2 975 5844 28 1 3 chr11 51120543 51121216 -70722640 - L1Md_F2 LINE L1 0 6582 5911 2 975 343 259 35 9 chr11 51121369 51121400 -70722456 - BC1_Mm scRNA scRNA -32 120 6 2 975 430 222 0 0 chr11 51121400 51121481 -70722375 - B4 SINE B4 -206 86 6 2 975 330 269 0 13 chr11 51121480 51121559 -70722297 + RMER30 DNA MER1_type 100 177 -25 2 975 363 44 0 0 chr11 51122467 51122512 -70721344 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 975 635 206 88 0 chr11 51122639 51122775 -70721081 - B1F SINE Alu 0 149 2 2 975 374 317 8 24 chr11 51122785 51122908 -70720948 - ID_B1 SINE B4 -22 202 82 2 975 293 222 0 43 chr11 51122998 51123092 -70720764 - L1MEc LINE L1 -4913 1487 1398 2 975 358 188 212 30 chr11 51123092 51123191 -70720665 - PB1D7 SINE Alu 0 117 1 2 975 354 45 0 0 chr11 51123191 51123235 -70720621 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 2 975 589 278 20 14 chr11 51123243 51123389 -70720467 - RSINE1 SINE B4 -15 150 4 2 975 1294 86 40 0 chr11 51123460 51123635 -70720221 - B2_Mm2 SINE B2 -11 184 3 2 975 814 266 128 11 chr11 51123635 51124072 -70719784 - L1MEc LINE L1 -5042 1358 871 2 975 205 224 20 0 chr11 51124222 51124271 -70719585 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 2 975 387 41 0 0 chr11 51124275 51124324 -70719532 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 975 324 0 0 0 chr11 51124324 51124359 -70719497 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 975 660 256 7 42 chr11 51124367 51124510 -70719346 - RSINE1 SINE B4 -18 147 10 2 975 546 279 58 101 chr11 51124507 51124714 -70719142 + ID_B1 SINE B4 5 202 -22 2 975 339 197 91 0 chr11 51124689 51124755 -70719101 + ID_B1 SINE B4 148 219 -5 2 975 360 335 136 29 chr11 51125064 51125307 -70718549 - L1MEc LINE L1 -5752 648 380 2 975 503 318 25 5 chr11 51125365 51125564 -70718292 - L1MC4a LINE L1 -1344 6538 6336 2 975 1047 294 74 26 chr11 51125620 51126254 -70717602 + Tigger7 DNA MER2_type 2015 2487 -4 2 975 862 291 82 11 chr11 51126461 51126729 -70717127 - B4 SINE B4 -5 287 1 2 975 207 0 0 0 chr11 51127189 51127212 -70716644 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 975 527 248 83 0 chr11 51127215 51127336 -70716520 + ID_B1 SINE B4 94 224 0 2 975 447 257 51 77 chr11 51127330 51127486 -70716370 + B4 SINE B4 72 223 -69 2 975 886 101 16 0 chr11 51127359 51127488 -70716368 + B1_Mus2 SINE Alu 17 147 0 2 975 423 98 0 0 chr11 51127721 51127782 -70716074 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 975 386 325 0 73 chr11 51127926 51128049 -70715807 - PB1 SINE Alu -2 125 12 2 975 228 100 0 0 chr11 51128078 51128118 -70715738 + (TTAA)n Simple_repeat Simple_repeat 2 41 0 2 975 27 29 0 0 chr11 51128156 51128190 -70715666 + AT_rich Low_complexity Low_complexity 1 34 0 2 975 565 305 219 0 chr11 51128351 51128584 -70715272 + B4A SINE B4 1 284 -8 2 975 1171 257 59 53 chr11 51128677 51129034 -70714822 - MER31A LTR ERV1 -125 360 2 2 975 441 0 0 0 chr11 51129128 51129177 -70714679 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 975 563 193 184 0 chr11 51129177 51129286 -70714570 - B3A SINE B2 -58 140 12 2 975 459 0 0 0 chr11 51129410 51129461 -70714395 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 975 335 233 0 0 chr11 51129666 51129726 -70714130 + tRNA-Ala-GCY_ tRNA tRNA 7 66 -9 2 975 873 242 159 0 chr11 51131191 51131443 -70712413 - B4A SINE B4 0 292 1 2 975 326 316 75 23 chr11 51131947 51132128 -70711728 + MER2B DNA MER2_type 139 331 -5 2 975 357 24 0 0 chr11 51132183 51132225 -70711631 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 975 681 257 0 54 chr11 51132225 51132373 -70711483 - B3A SINE B2 -44 154 15 2 975 201 147 0 0 chr11 51132607 51132641 -70711215 + (GGA)n Simple_repeat Simple_repeat 2 35 0 2 975 468 0 0 0 chr11 51132765 51132817 -70711039 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 975 286 297 9 98 chr11 51133434 51133546 -70710310 - Tigger7 DNA MER2_type -3 2488 2387 2 975 183 156 0 0 chr11 51133567 51133599 -70710257 + (TATG)n Simple_repeat Simple_repeat 1 32 0 2 975 387 230 168 69 chr11 51133599 51133639 -70710217 - Tigger7 DNA MER2_type -79 2412 2384 2 975 2448 152 66 2 chr11 51133639 51134035 -70709821 + MTC LTR MaLR 1 421 0 2 975 387 230 168 69 chr11 51134035 51134167 -70709689 - Tigger7 DNA MER2_type -108 2383 2223 2 975 1536 273 60 5 chr11 51134154 51134537 -70709319 - Tigger7 DNA MER2_type -2081 410 7 2 975 543 194 0 0 chr11 51134793 51134886 -70708970 + ORR1E LTR MaLR 3 95 -264 2 975 515 176 11 0 chr11 51134878 51134969 -70708887 + ORR1E LTR MaLR 284 375 -4 2 975 373 215 42 21 chr11 51135092 51135236 -70708620 - B3A SINE B2 0 198 1 2 975 538 284 0 0 chr11 51135239 51135366 -70708490 + MER3 DNA MER1_type 79 205 -4 2 975 219 139 0 0 chr11 51135383 51135419 -70708437 + (CATA)n Simple_repeat Simple_repeat 3 38 0 2 975 684 93 0 0 chr11 51135420 51135517 -70708339 + (GGGAGA)n Simple_repeat Simple_repeat 6 102 0 2 975 520 212 22 132 chr11 51135518 51135654 -70708202 - ID_B1 SINE B4 -23 201 81 2 975 301 259 61 88 chr11 51135521 51135669 -70708187 - MT2B2 LTR ERVL -288 296 153 2 975 388 247 0 11 chr11 51135684 51135774 -70708082 + Tigger5 DNA MER2_type 2136 2224 -182 2 975 195 42 0 0 chr11 51136115 51136139 -70707717 + (CATAT)n Simple_repeat Simple_repeat 2 25 0 2 975 294 98 0 0 chr11 51136241 51136292 -70707564 + (T)n Simple_repeat Simple_repeat 1 51 0 2 975 263 309 0 7 chr11 51137139 51137289 -70706567 + (CA)n Simple_repeat Simple_repeat 2 150 0 2 975 315 350 0 0 chr11 51137301 51137401 -70706455 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 975 199 265 205 0 chr11 51137724 51137807 -70706049 + MIRb SINE MIR 124 223 -45 2 975 725 142 0 8 chr11 51138600 51138728 -70705128 + (TA)n Simple_repeat Simple_repeat 2 128 0 2 975 310 280 150 16 chr11 51138845 51138972 -70704884 - HAL1-3A_ME LINE L1 -431 2427 2284 2 975 438 20 0 0 chr11 51138977 51139028 -70704828 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 975 262 383 0 0 chr11 51139028 51139129 -70704727 - ID4_ SINE ID -37 115 15 2 975 375 318 9 0 chr11 51139144 51139254 -70704602 - PB1D10 SINE Alu -5 112 2 2 975 446 226 34 101 chr11 51139254 51139346 -70704510 - ID SINE ID -141 83 2 2 975 345 268 0 0 chr11 51139378 51139453 -70704403 - ID4_ SINE ID -7 76 2 2 975 180 300 33 0 chr11 51140101 51140161 -70703695 + L2a LINE L2 3322 3383 -43 2 975 318 328 25 0 chr11 51140696 51140815 -70703041 + B1F1 SINE Alu 27 148 -1 2 975 253 239 75 0 chr11 51140822 51140889 -70702967 + ID4_ SINE ID 2 73 -10 2 975 414 0 0 0 chr11 51140895 51140941 -70702915 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 975 499 232 21 0 chr11 51141285 51141380 -70702476 - B1F2 SINE Alu -11 138 42 2 975 480 324 0 0 chr11 51141394 51141573 -70702283 + CT-rich Low_complexity Low_complexity 1 179 0 2 975 428 283 139 16 chr11 51141936 51142123 -70701733 - MLT2B4 LTR ERVL -328 228 19 2 975 565 262 89 32 chr11 51142541 51142916 -70700940 + L1MA6 LINE L1 5751 6180 -120 2 975 314 189 135 0 chr11 51143007 51143081 -70700775 + B3A SINE B2 2 85 -113 2 975 327 213 234 68 chr11 51143156 51143259 -70700597 + B3A SINE B2 95 212 -4 2 975 216 0 0 0 chr11 51143913 51143937 -70699919 + (T)n Simple_repeat Simple_repeat 1 24 0 2 975 229 271 40 150 chr11 51144222 51144322 -70699534 + MTEb LTR MaLR 52 140 -219 2 975 263 321 62 27 chr11 51144371 51144483 -70699373 + MTEb LTR MaLR 263 378 -1 2 975 3044 148 25 11 chr11 51144700 51145220 -70698636 + RLTR11A2 LTR ERVK 1 527 0 2 975 311 252 3 2 chr11 51145626 51145693 -70698163 + B1_Mm SINE Alu 36 103 -17 2 975 299 159 91 0 chr11 51145812 51145900 -70697956 + MYSERV6-int LTR ERVK 6410 6505 -2454 2 975 1928 149 12 58 chr11 51145901 51146243 -70697613 + ORR1A3 LTR MaLR 1 326 0 2 975 703 192 23 38 chr11 51146243 51146444 -70697412 + ORR1A3-int LTR MaLR 1 179 -1079 2 975 446 199 50 64 chr11 51146643 51146783 -70697073 - MYSERV6-int LTR ERVK -2285 6674 6537 3 975 962 127 6 0 chr11 51146895 51147053 -70696803 + (GAAA)n Simple_repeat Simple_repeat 1 159 0 3 975 519 123 0 0 chr11 51147053 51147134 -70696722 + (GGGA)n Simple_repeat Simple_repeat 1 81 0 3 975 650 309 0 0 chr11 51147216 51147352 -70696504 - RSINE1 SINE B4 -27 138 3 3 975 193 284 14 29 chr11 51147742 51147811 -70696045 + MIRb SINE MIR 173 240 -28 3 975 706 261 18 12 chr11 51148451 51148614 -70695242 - ID_B1 SINE B4 -10 214 51 3 975 442 273 40 20 chr11 51148606 51148707 -70695149 + RSINE1 SINE B4 42 144 -21 3 975 405 58 0 0 chr11 51148726 51148778 -70695078 + (TAA)n Simple_repeat Simple_repeat 1 52 0 3 975 261 293 109 54 chr11 51148808 51148992 -70694864 - L2a LINE L2 -5 3421 3228 3 975 471 35 0 0 chr11 51148996 51149053 -70694803 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 975 448 41 55 0 chr11 51149784 51149857 -70693999 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 3 975 714 284 18 53 chr11 51150842 51151069 -70692787 - B4A SINE B4 -3 289 71 3 975 621 260 82 18 chr11 51151223 51151505 -70692351 - L1M5 LINE L1 -426 5747 5448 3 975 412 345 129 78 chr11 51151506 51151956 -70691900 - L1M5 LINE L1 -1334 4812 4340 3 975 263 304 55 24 chr11 51152131 51152296 -70691560 - L1M5 LINE L1 -1834 4312 4143 3 975 227 306 39 39 chr11 51152401 51152554 -70691302 - L1M5 LINE L1 -2199 3947 3795 3 975 243 0 0 0 chr11 51152567 51152594 -70691262 + (TTGG)n Simple_repeat Simple_repeat 4 30 0 3 975 812 176 0 0 chr11 51152594 51152725 -70691131 - B1_Mur4 SINE Alu -4 146 16 3 975 338 293 60 107 chr11 51152596 51152764 -70691092 - B4A SINE B4 -71 221 62 3 975 350 284 134 59 chr11 51152787 51152925 -70690931 - L1M5 LINE L1 -2424 3722 3565 3 975 279 0 0 0 chr11 51152925 51152956 -70690900 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 975 350 284 134 59 chr11 51152956 51153004 -70690852 - L1M5 LINE L1 -2582 3564 3523 3 975 419 332 67 40 chr11 51153330 51153553 -70690303 - MLT1F1 LTR MaLR -339 230 2 3 975 906 273 92 33 chr11 51153642 51153915 -70689941 + B4 SINE B4 2 290 -2 3 975 215 302 8 0 chr11 51153948 51154067 -70689789 + (CATA)n Simple_repeat Simple_repeat 2 121 0 3 975 558 294 122 96 chr11 51154149 51154544 -70689312 + MLT1A1 LTR MaLR 4 408 0 3 975 427 297 10 10 chr11 51154562 51154664 -70689192 - PB1D10 SINE Alu -9 108 7 3 975 388 270 284 13 chr11 51155014 51155250 -70688606 + MLT1H2 LTR MaLR 1 300 -189 3 975 426 278 121 104 chr11 51155587 51155867 -70687989 + MLT1A0 LTR MaLR 55 339 -26 3 975 279 0 0 0 chr11 51155867 51155898 -70687958 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 975 340 180 0 0 chr11 51155922 51155972 -70687884 - RSINE1 SINE B4 -31 134 85 3 975 437 316 18 42 chr11 51156002 51156167 -70687689 - B4A SINE B4 -131 161 1 3 975 251 312 64 0 chr11 51156482 51156591 -70687265 + MER121 Unknown Unknown 79 194 -218 3 975 261 0 0 0 chr11 51156619 51156648 -70687208 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 975 1159 150 0 58 chr11 51157394 51157599 -70686257 + RMER30 DNA MER1_type 9 201 -1 3 975 924 133 0 0 chr11 51158142 51158322 -70685534 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 975 725 219 127 70 chr11 51158398 51158659 -70685197 - B4 SINE B4 0 292 29 3 975 261 301 205 78 chr11 51158840 51159045 -70684811 - MLT1K LTR MaLR -321 274 44 3 975 863 227 89 0 chr11 51159052 51159255 -70684601 + ID_B1 SINE B4 1 221 -3 3 975 364 229 156 0 chr11 51160046 51160142 -70683714 - RSINE1 SINE B4 -54 111 1 3 975 474 176 0 0 chr11 51160199 51160273 -70683583 - B1_Mur2 SINE Alu -8 141 68 3 975 234 360 13 0 chr11 51161105 51161180 -70682676 + ID4 SINE ID 3 78 -5 3 975 231 69 0 0 chr11 51161644 51161673 -70682183 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 975 860 111 6 19 chr11 51161673 51161829 -70682027 + (GAA)n Simple_repeat Simple_repeat 1 154 0 3 975 327 215 0 15 chr11 51161836 51161902 -70681954 - B3A SINE B2 -96 102 38 3 975 526 257 229 19 chr11 51162001 51162211 -70681645 - B4A SINE B4 -36 256 3 3 975 245 250 97 18 chr11 51162212 51162326 -70681530 - BC1_Mm scRNA scRNA -20 132 10 3 975 289 298 103 2 chr11 51162310 51162325 -70681531 - PB1 SINE Alu -30 119 11 3 975 283 333 11 11 chr11 51162325 51162416 -70681440 - ID_B1 SINE B4 -42 182 92 3 975 768 265 45 14 chr11 51162457 51162679 -70681177 + Tigger7 DNA MER2_type 385 613 -1878 3 975 370 214 79 0 chr11 51162659 51162748 -70681108 + Tigger7 DNA MER2_type 2392 2487 -4 3 975 186 43 0 0 chr11 51163069 51163092 -70680764 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 975 188 145 0 84 chr11 51163396 51163479 -70680377 + GA-rich Low_complexity Low_complexity 5 80 0 3 975 314 243 0 42 chr11 51163499 51163761 -70680095 + GA-rich Low_complexity Low_complexity 1 250 0 3 975 231 257 21 0 chr11 51163761 51163905 -70679951 + (CAGGG)n Simple_repeat Simple_repeat 4 150 0 3 975 287 210 16 43 chr11 51163931 51164115 -70679741 + GA-rich Low_complexity Low_complexity 1 179 0 3 975 459 0 0 0 chr11 51164389 51164440 -70679416 + (ATG)n Simple_repeat Simple_repeat 2 52 0 3 975 256 314 0 0 chr11 51166422 51166492 -70677364 + C-rich Low_complexity Low_complexity 1 70 0 3 975 333 202 11 45 chr11 51166562 51166650 -70677206 + L1MB3 LINE L1 5545 5629 -539 3 975 336 247 54 23 chr11 51166650 51166770 -70677086 - PB1D10 SINE Alu -2 125 2 3 975 609 343 78 25 chr11 51166774 51167094 -70676762 + L1MB3 LINE L1 5628 5964 -219 3 975 1197 112 94 33 chr11 51167167 51167380 -70676476 - URR1A DNA MER1_type 0 226 1 3 975 414 39 0 0 chr11 51168150 51168202 -70675654 + (TTAG)n Simple_repeat Simple_repeat 2 53 0 3 975 586 256 0 8 chr11 51168219 51168345 -70675511 - B1_Mur3 SINE Alu -22 127 3 3 975 293 333 64 46 chr11 51168345 51168405 -70675451 - B4A SINE B4 -200 92 30 3 975 918 280 47 24 chr11 51168512 51168787 -70675069 + B4 SINE B4 1 286 -6 3 975 1021 94 14 0 chr11 51170429 51170567 -70673289 + B1_Mur4 SINE Alu 1 140 -10 3 975 857 249 101 44 chr11 51170592 51170840 -70673016 + B4 SINE B4 27 288 -4 3 975 325 247 36 36 chr11 51171109 51171193 -70672663 - PB1 SINE Alu -28 99 16 3 975 1938 150 12 27 chr11 51171694 51172030 -70671826 - RLTR15 LTR ERVK -28 331 1 3 975 232 291 75 28 chr11 51172406 51172512 -70671344 - MER5A1 DNA MER1_type -3 163 53 3 975 3799 106 53 0 chr11 51172529 51173074 -70670782 + L1Md_F2 LINE L1 392 965 -5651 3 975 27393 68 6 1 chr11 51173059 51176627 -70667229 + L1Md_F2 LINE L1 1999 5586 -297 3 975 8088 51 1 11 chr11 51176627 51177631 -70666225 + L1Md_F2 LINE L1 5587 6580 -2 3 975 388 266 61 23 chr11 51177894 51178025 -70665831 - MIRb SINE MIR -50 218 83 3 975 381 257 58 19 chr11 51178134 51178237 -70665619 + MER2 DNA MER2_type 48 154 -191 3 975 1255 252 16 82 chr11 51178395 51178762 -70665094 - MTE2a LTR MaLR -8 371 29 3 975 345 109 0 0 chr11 51178825 51178889 -70664967 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 975 245 250 44 0 chr11 51179075 51179143 -70664713 + L1MC4a LINE L1 5862 5932 -1950 3 975 550 282 70 53 chr11 51179188 51179375 -70664481 + B3A SINE B2 1 190 -8 3 975 306 252 183 13 chr11 51180851 51181004 -70662852 + MLT1C LTR MaLR 98 276 -191 3 975 762 233 33 52 chr11 51180990 51181203 -70662653 + ORR1E LTR MaLR 139 347 -12 3 975 458 383 131 14 chr11 51181216 51181629 -70662227 - L1MDa LINE L1 -5864 769 309 3 975 852 189 0 45 chr11 51181695 51181850 -70662006 - B1_Mur4 SINE Alu -1 149 2 3 975 356 320 81 28 chr11 51181914 51182206 -70661650 - L1MEd LINE L1 -5117 1108 731 3 975 494 332 42 0 chr11 51182734 51182924 -70660932 + L4 LINE RTE 1651 1848 -181 3 975 790 244 121 10 chr11 51183303 51183502 -70660354 + ID_B1 SINE B4 2 222 -2 3 975 633 252 102 41 chr11 51183714 51183958 -70659898 + MIR SINE MIR 3 261 -1 3 975 510 280 45 91 chr11 51183992 51184212 -70659644 - MTEb LTR MaLR 0 379 170 3 975 557 226 11 5 chr11 51184275 51184439 -70659417 + ORR1E LTR MaLR 205 368 -2 3 975 278 308 37 28 chr11 51185944 51185955 -70657901 + B4 SINE B4 81 92 -200 3 975 500 224 37 0 chr11 51185955 51186062 -70657794 + PB1D9 SINE Alu 1 111 -9 3 975 321 331 39 0 chr11 51186077 51186207 -70657649 - MLT1B LTR MaLR -163 227 93 3 975 242 317 23 77 chr11 51186241 51186371 -70657485 - MTEb LTR MaLR 0 379 257 3 975 367 271 39 31 chr11 51186390 51186524 -70657332 + B3A SINE B2 69 201 -15 3 975 23 33 0 0 chr11 51186701 51186731 -70657125 + AT_rich Low_complexity Low_complexity 1 30 0 3 975 1004 236 9 5 chr11 51187407 51187628 -70656228 - ID_B1 SINE B4 -2 222 1 3 975 279 343 49 27 chr11 51187732 51187912 -70655944 + MIRb SINE MIR 14 193 -69 3 975 200 263 35 17 chr11 51189011 51189069 -70654787 + MIRb SINE MIR 111 169 -99 3 975 414 0 0 0 chr11 51189132 51189178 -70654678 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 975 697 175 46 38 chr11 51189200 51189331 -70654525 - RSINE1 SINE B4 -31 134 3 3 975 663 214 68 47 chr11 51190122 51190313 -70653543 - B3A SINE B2 -3 195 1 3 975 236 304 54 0 chr11 51191131 51191223 -70652633 + MLT1E1A LTR MaLR 328 426 -227 3 975 285 255 239 36 chr11 51191323 51191490 -70652366 + MLT1E1A LTR MaLR 408 608 -72 3 975 631 207 126 0 chr11 51191509 51191655 -70652201 + B3A SINE B2 3 162 -36 3 975 189 0 0 0 chr11 51191655 51191676 -70652180 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 975 295 319 99 12 chr11 51191676 51191700 -70652156 + B2_Mm2 SINE B2 162 187 -8 3 975 197 315 21 52 chr11 51191868 51191965 -70651891 + L2a LINE L2 3063 3156 -270 3 975 464 288 8 31 chr11 51192101 51192230 -70651626 - RSINE1 SINE B4 -37 128 3 3 975 376 326 43 77 chr11 51192410 51192643 -70651213 + MLT1C LTR MaLR 241 465 -2 3 975 246 172 0 17 chr11 51192861 51192920 -70650936 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 975 373 259 12 0 chr11 51193057 51193138 -70650718 - ID4_ SINE ID 0 83 2 3 975 1119 262 17 30 chr11 51193256 51193551 -70650305 - B4 SINE B4 0 292 2 4 975 651 90 6 57 chr11 51194049 51194067 -70649789 + (TG)n Simple_repeat Simple_repeat 2 19 0 4 975 537 16 0 0 chr11 51194067 51194129 -70649727 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 975 651 56 21 49 chr11 51194129 51194179 -70649677 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 975 285 29 0 0 chr11 51194179 51194212 -70649644 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 975 651 90 6 57 chr11 51194212 51194359 -70649497 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 975 198 0 0 0 chr11 51194358 51194380 -70649476 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 975 452 18 0 17 chr11 51194388 51194446 -70649410 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 975 511 220 308 6 chr11 51194535 51194704 -70649152 - ID_B1 SINE B4 -2 222 3 4 975 1235 250 74 3 chr11 51195700 51196009 -70647847 + MER2 DNA MER2_type 1 331 -14 4 975 235 179 196 0 chr11 51196155 51196211 -70647645 + ID4 SINE ID 1 67 -16 4 975 858 260 68 39 chr11 51196280 51196560 -70647296 + B4A SINE B4 5 292 0 4 975 404 284 43 49 chr11 51196642 51196805 -70647051 + L1MB3 LINE L1 5639 5800 -383 4 975 434 132 10 52 chr11 51196828 51196924 -70646932 + PB1 SINE Alu 34 125 -2 4 975 464 253 79 12 chr11 51196924 51197088 -70646768 + L1MB3 LINE L1 5818 5992 -191 4 975 558 239 63 78 chr11 51197119 51197310 -70646546 - B3A SINE B2 0 198 11 4 975 561 286 79 25 chr11 51197791 51198031 -70645825 + MER113 DNA MER1_type 197 449 -72 4 975 512 129 74 0 chr11 51198474 51198637 -70645219 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 4 975 654 105 0 0 chr11 51198687 51198792 -70645064 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 4 975 412 221 47 0 chr11 51199061 51199147 -70644709 + RSINE1 SINE B4 16 105 -60 4 975 286 261 159 18 chr11 51199239 51199352 -70644504 + MLT1A1 LTR MaLR 268 396 -12 4 975 216 194 47 31 chr11 51199364 51199428 -70644428 - MIRb SINE MIR -89 179 115 4 975 207 284 0 37 chr11 51200573 51200639 -70643217 + MIR SINE MIR 74 137 -139 4 975 610 219 121 28 chr11 51200789 51200930 -70642926 + B4 SINE B4 2 155 -137 4 975 689 229 152 26 chr11 51201297 51201606 -70642250 + L1MB3 LINE L1 5795 6142 -41 4 975 351 267 104 22 chr11 51201606 51201740 -70642116 + RSINE1 SINE B4 2 146 -19 4 975 186 43 0 0 chr11 51201746 51201769 -70642087 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 975 266 254 121 4 chr11 51201822 51201946 -70641910 + PB1D10 SINE Alu 5 144 -5 4 975 279 140 0 0 chr11 51201947 51201997 -70641859 + (GGA)n Simple_repeat Simple_repeat 2 51 0 4 975 898 163 11 6 chr11 51201994 51202173 -70641683 + GA-rich Low_complexity Low_complexity 1 180 0 4 975 745 111 0 23 chr11 51202141 51202270 -70641586 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 4 975 329 305 88 67 chr11 51202639 51202882 -70640974 + MIRb SINE MIR 1 249 -19 4 975 230 247 212 0 chr11 51204351 51204436 -70639420 + ID_B1 SINE B4 51 153 -71 4 975 534 82 0 0 chr11 51204436 51204521 -70639335 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 4 975 264 299 0 0 chr11 51204557 51204624 -70639232 + C-rich Low_complexity Low_complexity 4 70 0 4 975 189 329 23 68 chr11 51204779 51204867 -70638989 - MIRb SINE MIR -94 174 91 4 975 1108 272 31 11 chr11 51205791 51206140 -70637716 + ORR1E LTR MaLR 2 357 -2 4 975 210 118 0 0 chr11 51206361 51206395 -70637461 + (T)n Simple_repeat Simple_repeat 1 34 0 4 975 766 252 13 87 chr11 51206447 51206638 -70637218 - B3A SINE B2 -23 175 1 4 975 306 0 0 0 chr11 51206879 51206913 -70636943 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 975 225 154 0 0 chr11 51207829 51207868 -70635988 + CT-rich Low_complexity Low_complexity 2 40 0 4 975 830 236 35 30 chr11 51207890 51208087 -70635769 - ID_B1 SINE B4 0 224 27 4 975 816 263 110 76 chr11 51208098 51208732 -70635124 - L1MC5 LINE L1 -489 7472 6817 4 975 421 300 112 52 chr11 51208738 51208944 -70634912 - MLT1A1 LTR MaLR -16 392 173 4 975 2715 97 66 28 chr11 51208944 51209368 -70634488 - BGLII_B LTR ERVK -1 440 1 4 975 421 300 112 52 chr11 51209368 51209393 -70634463 - MLT1A1 LTR MaLR -236 172 148 4 975 381 149 0 0 chr11 51209393 51209460 -70634396 + (TCC)n Simple_repeat Simple_repeat 2 68 0 4 975 1306 231 55 112 chr11 51209528 51209928 -70633928 + MTE2a LTR MaLR 3 379 0 4 975 269 209 82 71 chr11 51209928 51210023 -70633833 - MLT1A1 LTR MaLR -290 100 5 4 975 180 0 0 0 chr11 51210343 51210363 -70633493 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 975 488 252 45 8 chr11 51210873 51211005 -70632851 - RSINE1 SINE B4 -6 159 23 4 975 322 346 0 0 chr11 51211027 51211131 -70632725 - PB1 SINE Alu -5 122 19 4 975 226 184 0 20 chr11 51211382 51211432 -70632424 + T-rich Low_complexity Low_complexity 4 52 0 4 975 486 0 0 0 chr11 51211538 51211592 -70632264 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 975 269 305 38 9 chr11 51212150 51212256 -70631600 + ORR1E LTR MaLR 269 377 -2 4 975 303 215 0 0 chr11 51212683 51212748 -70631108 + Tigger7 DNA MER2_type 54 118 -2373 4 975 466 300 139 0 chr11 51212751 51212925 -70630931 + Tigger7 DNA MER2_type 2282 2480 -11 4 975 808 226 53 6 chr11 51212925 51213094 -70630762 + B3A SINE B2 1 177 -21 4 975 21 0 0 0 chr11 51213097 51213118 -70630738 + AT_rich Low_complexity Low_complexity 1 21 0 4 975 709 21 41 0 chr11 51213679 51213776 -70630080 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 4 975 338 257 119 69 chr11 51214023 51214182 -70629674 - B4A SINE B4 -77 215 49 4 975 619 234 29 105 chr11 51214237 51214447 -70629409 - B3A SINE B2 -4 194 1 4 975 300 53 0 0 chr11 51214992 51215030 -70628826 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 975 796 270 85 18 chr11 51215036 51215308 -70628548 - B4A SINE B4 -2 290 1 4 975 286 281 48 19 chr11 51215312 51215417 -70628439 - L1MA6 LINE L1 -163 6137 6030 4 975 829 298 14 24 chr11 51215438 51215692 -70628164 - L1MA6 LINE L1 -254 6046 5795 4 975 757 207 23 122 chr11 51215734 51215948 -70627908 - B3A SINE B2 0 198 1 4 975 590 0 14 0 chr11 51216002 51216072 -70627784 + (GA)n Simple_repeat Simple_repeat 1 71 0 4 975 500 254 52 72 chr11 51216093 51216246 -70627610 + ID_B1 SINE B4 5 154 -70 4 975 184 216 0 0 chr11 51216504 51216541 -70627315 - L3 LINE CR1 -2245 2244 2208 4 975 234 296 42 85 chr11 51216541 51216707 -70627149 + MIRc SINE MIR 4 158 -110 4 975 352 356 33 22 chr11 51217852 51218033 -70625823 - MLT1J LTR MaLR -229 283 101 4 975 816 244 26 10 chr11 51218764 51218959 -70624897 + ORR1E LTR MaLR 1 198 -161 4 975 282 186 42 0 chr11 51218959 51219077 -70624779 + (TCTG)n Simple_repeat Simple_repeat 2 124 0 4 975 368 179 53 0 chr11 51219136 51219287 -70624569 + (TCTCTG)n Simple_repeat Simple_repeat 2 160 0 4 975 596 260 22 28 chr11 51219289 51219467 -70624389 + ORR1E LTR MaLR 162 338 -21 4 975 308 268 180 7 chr11 51219471 51219610 -70624246 - RMER15 LTR ERVL -7 568 406 4 975 290 275 94 68 chr11 51220571 51220688 -70623168 - ORR1E LTR MaLR -11 368 249 4 975 549 224 123 12 chr11 51220739 51220902 -70622954 + B3A SINE B2 1 181 -17 4 975 527 246 14 40 chr11 51221066 51221214 -70622642 - ORR1E LTR MaLR -215 144 1 4 975 1226 49 0 0 chr11 51221545 51221688 -70622168 + B1_Mus2 SINE Alu 2 144 -3 4 975 180 0 0 0 chr11 51221688 51221708 -70622148 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 975 513 255 7 41 chr11 51221914 51222061 -70621795 - RSINE1 SINE B4 -19 146 5 4 975 225 94 0 0 chr11 51222283 51222315 -70621541 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 975 276 213 0 0 chr11 51222400 51222461 -70621395 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 975 1830 204 18 18 chr11 51222955 51223344 -70620512 - MT2A LTR ERVL -144 389 1 4 975 290 316 16 88 chr11 51223352 51223477 -70620379 + B4A SINE B4 177 292 0 4 975 287 308 0 0 chr11 51223478 51223543 -70620313 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 975 1411 128 14 0 chr11 51223564 51223782 -70620074 + URR1B DNA MER1_type 5 225 0 4 975 414 266 176 8 chr11 51224026 51224151 -70619705 - RSINE1 SINE B4 -4 161 16 4 975 693 231 27 13 chr11 51225170 51225319 -70618537 + RSINE1 SINE B4 3 153 -12 4 975 297 0 0 0 chr11 51225645 51225678 -70618178 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 975 1182 51 0 0 chr11 51225678 51225815 -70618041 - B1_Mus1 SINE Alu -10 138 2 4 975 1043 134 6 0 chr11 51226011 51226190 -70617666 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 975 295 260 59 50 chr11 51226206 51226307 -70617549 - PB1D10 SINE Alu -15 102 1 4 975 258 160 0 0 chr11 51226346 51226396 -70617460 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 975 675 235 17 45 chr11 51226396 51226574 -70617282 - B4A SINE B4 0 292 120 4 975 470 316 98 7 chr11 51226764 51226917 -70616939 + MER45A DNA Tip100 8 174 -4 4 975 458 242 31 31 chr11 51227199 51227297 -70616559 - RSINE1 SINE B4 -21 144 47 4 975 891 265 92 44 chr11 51227283 51227339 -70616517 - B4A SINE B4 -30 262 212 4 975 2619 74 6 0 chr11 51227339 51227664 -70616192 - ORR1A2 LTR MaLR 0 327 1 4 975 891 265 92 44 chr11 51227664 51227856 -70616000 - B4A SINE B4 -81 211 2 4 975 234 81 0 0 chr11 51227861 51227898 -70615958 + (A)n Simple_repeat Simple_repeat 1 37 0 4 975 498 318 145 30 chr11 51227933 51228483 -70615373 - L1ME1 LINE L1 -68 6111 5499 4 975 23 33 0 0 chr11 51228581 51228611 -70615245 + AT_rich Low_complexity Low_complexity 1 30 0 4 975 188 377 116 7 chr11 51228920 51229067 -70614789 - MER5B DNA MER1_type -4 174 12 4 975 678 300 30 49 chr11 51230142 51230405 -70613451 + MER2 DNA MER2_type 86 343 -2 4 975 246 32 0 0 chr11 51230541 51230572 -70613284 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 975 904 204 49 80 chr11 51231354 51231578 -70612278 - ID_B1 SINE B4 -7 217 1 5 975 259 153 0 52 chr11 51231942 51232002 -70611854 - MIRb SINE MIR -103 165 103 5 975 253 391 43 10 chr11 51232840 51232986 -70610870 + MIRc SINE MIR 37 181 -87 5 975 822 267 85 0 chr11 51233521 51233768 -70610088 - MLT1B LTR MaLR -119 271 4 5 975 969 320 95 19 chr11 51233808 51234231 -70609625 + MER21B LTR ERV1 13 467 -396 5 975 495 153 0 0 chr11 51234234 51234332 -70609524 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 975 733 206 17 104 chr11 51234332 51234441 -70609415 - RSINE1 SINE B4 0 165 74 5 975 3093 57 34 3 chr11 51234441 51234829 -70609027 - MTB LTR MaLR 0 400 1 5 975 733 206 17 104 chr11 51234829 51234892 -70608964 - RSINE1 SINE B4 -92 73 8 5 975 309 279 11 65 chr11 51234888 51234980 -70608876 - B4 SINE B4 -193 99 13 5 975 325 266 46 42 chr11 51235161 51235309 -70608547 + B3 SINE B2 23 214 -2 5 975 410 262 23 0 chr11 51235658 51235830 -70608026 + (CACAC)n Simple_repeat Simple_repeat 1 176 0 5 975 365 302 100 44 chr11 51238238 51238418 -70605438 - MTEa LTR MaLR -54 325 136 5 975 388 293 43 130 chr11 51238434 51238595 -70605261 - MTEa LTR MaLR -232 147 1 5 975 389 252 102 31 chr11 51239143 51239270 -70604586 + MLT1A1 LTR MaLR 273 408 0 5 975 276 120 0 0 chr11 51239390 51239440 -70604416 + (GGA)n Simple_repeat Simple_repeat 1 50 0 5 975 587 303 22 22 chr11 51239485 51239664 -70604192 - ID_B1 SINE B4 -6 218 40 5 975 368 236 90 0 chr11 51239686 51239775 -70604081 + MIRb SINE MIR 101 197 -71 5 975 701 301 143 17 chr11 51240213 51240486 -70603370 - L1MC1 LINE L1 -19 6314 5987 5 975 423 0 0 0 chr11 51240486 51240533 -70603323 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 975 701 301 143 17 chr11 51240533 51240719 -70603137 - L1MC1 LINE L1 -347 5986 5797 5 975 1678 210 9 24 chr11 51240876 51241213 -70602643 - MTEb LTR MaLR -34 345 14 5 975 346 286 0 0 chr11 51241281 51241379 -70602477 - L1MC1 LINE L1 -844 5302 5205 5 975 210 273 0 0 chr11 51241896 51241940 -70601916 - ID4_ SINE ID -32 51 8 5 975 297 341 8 75 chr11 51242416 51242549 -70601307 - MIRb SINE MIR -21 247 124 5 975 336 161 0 0 chr11 51242648 51242710 -70601146 + (CGTG)n Simple_repeat Simple_repeat 2 63 0 5 975 536 269 108 6 chr11 51242714 51242871 -70600985 - B4 SINE B4 -3 289 117 5 975 225 341 70 56 chr11 51244023 51244166 -70599690 + MLT1A1 LTR MaLR 39 183 -225 5 975 210 37 0 0 chr11 51244166 51244193 -70599663 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 5 975 309 222 58 58 chr11 51244238 51244324 -70599532 + MLT1A1 LTR MaLR 315 400 -8 5 975 783 272 6 0 chr11 51244418 51244587 -70599269 - ID_B1 SINE B4 -53 171 2 5 975 390 222 65 22 chr11 51245395 51245487 -70598369 + B1F1 SINE Alu 2 97 -52 5 975 213 234 155 87 chr11 51245525 51245628 -70598228 - MIR3 SINE MIR -11 197 88 5 975 543 31 0 0 chr11 51246080 51246145 -70597711 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 975 267 279 0 42 chr11 51246395 51246466 -70597390 - RMER15 LTR ERVL -105 470 403 5 975 248 357 30 15 chr11 51246779 51246915 -70596941 - MIRc SINE MIR -143 133 2 5 975 212 207 16 79 chr11 51247485 51247548 -70596308 - MIRm SINE MIR -93 183 125 5 975 1034 292 79 35 chr11 51247606 51247857 -70595999 - MTEa LTR MaLR -4 375 109 5 975 2012 156 65 42 chr11 51247857 51248110 -70595746 + ORR1B2 LTR MaLR 5 276 -91 5 975 1104 61 0 0 chr11 51248110 51248242 -70595614 + B1_Mus1 SINE Alu 4 135 -13 5 975 287 25 0 24 chr11 51248242 51248283 -70595573 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 975 2012 156 65 42 chr11 51248283 51248383 -70595473 + ORR1B2 LTR MaLR 277 366 -1 5 975 1034 292 79 35 chr11 51248383 51248472 -70595384 - MTEa LTR MaLR -271 108 20 5 975 180 0 0 0 chr11 51249027 51249047 -70594809 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 121 269 208 14 0 chr11 51249085 51249157 -70594699 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 976 1135 95 14 0 chr11 51249256 51249403 -70594453 + B1_Mur4 SINE Alu 2 150 0 5 976 28 0 0 0 chr11 51249403 51249431 -70594425 + AT_rich Low_complexity Low_complexity 1 28 0 5 976 371 188 0 127 chr11 51249431 51249541 -70594315 + B3A SINE B2 103 198 0 5 976 549 274 32 7 chr11 51249555 51249709 -70594147 - MIR SINE MIR -57 205 48 5 976 2948 37 43 0 chr11 51251217 51251569 -70592287 + IAPLTR1_Mm LTR ERVK 1 367 0 5 976 20075 39 47 14 chr11 51251569 51254146 -70589710 + IAPEz-int LTR ERVK 8 2670 -3811 5 976 9106 25 3 1 chr11 51254124 51255204 -70588652 + IAPEz-int LTR ERVK 5400 6481 0 5 976 2934 40 43 0 chr11 51255204 51255556 -70588300 + IAPLTR1_Mm LTR ERVK 1 367 0 5 976 1534 192 129 3 chr11 51255794 51256112 -70587744 + ORR1D2 LTR MaLR 5 362 -8 5 976 293 282 8 8 chr11 51256396 51256514 -70587342 + (CAA)n Simple_repeat Simple_repeat 1 118 0 5 976 582 267 22 0 chr11 51257208 51257343 -70586513 + B1F1 SINE Alu 5 142 -7 5 976 277 390 54 21 chr11 51257689 51257875 -70585981 + L2b LINE L2 3184 3375 0 5 976 456 240 138 8 chr11 51258040 51258170 -70585686 + RSINE1 SINE B4 2 148 -17 5 976 360 0 0 0 chr11 51258188 51258228 -70585628 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 976 476 305 134 21 chr11 51258363 51258540 -70585316 - L1MD3 LINE L1 -2117 5878 5670 5 976 414 0 0 0 chr11 51258540 51258586 -70585270 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 976 540 167 49 36 chr11 51258586 51258699 -70585157 - L1MD3 LINE L1 -2326 5669 5555 5 976 473 328 16 5 chr11 51258692 51258882 -70584974 - L1MDa LINE L1 -4341 2292 2101 5 976 404 213 17 199 chr11 51258882 51258962 -70584894 - B1F1 SINE Alu 0 149 79 5 976 4847 11 0 0 chr11 51258962 51259496 -70584360 + L1Md_A LINE L1 6049 6582 0 5 976 404 213 17 199 chr11 51259496 51259591 -70584265 - B1F1 SINE Alu -71 78 6 5 976 235 253 13 51 chr11 51259523 51259602 -70584254 - B4A SINE B4 -136 156 81 5 976 432 200 69 20 chr11 51259616 51259718 -70584138 - B1F2 SINE Alu -4 145 39 5 976 247 269 52 171 chr11 51259800 51260011 -70583845 - L1MDa LINE L1 -4673 1960 1775 5 976 954 189 53 30 chr11 51260204 51260552 -70583304 - MTC LTR MaLR -14 407 1 5 976 408 177 219 0 chr11 51261005 51261101 -70582755 - PB1D7 SINE Alu 0 120 4 5 976 549 44 0 0 chr11 51261174 51261242 -70582614 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 976 1068 214 10 10 chr11 51261573 51261776 -70582080 + B3 SINE B2 14 216 0 5 976 546 248 39 96 chr11 51261808 51261964 -70581892 - B3A SINE B2 0 198 52 5 976 300 162 40 26 chr11 51262067 51262143 -70581713 + B3A SINE B2 1 77 -121 5 976 357 261 22 22 chr11 51262784 51262874 -70580982 + RSINE1 SINE B4 12 101 -64 5 976 278 250 31 0 chr11 51262893 51262957 -70580899 - MER2B DNA MER2_type -80 256 191 5 976 270 303 50 10 chr11 51262980 51263080 -70580776 + ORR1E LTR MaLR 5 108 -251 5 976 847 279 12 32 chr11 51263051 51263299 -70580557 - B4 SINE B4 0 292 50 5 976 372 279 60 32 chr11 51263602 51263787 -70580069 + L1MB4 LINE L1 5651 5840 -340 5 976 1030 249 172 3 chr11 51263790 51264092 -70579764 - ORR1E LTR MaLR -2 357 5 5 976 499 263 75 79 chr11 51264100 51264382 -70579474 + L1MB4 LINE L1 5841 6132 -48 5 976 461 255 42 21 chr11 51264382 51264526 -70579330 + B1F SINE Alu 3 149 0 5 976 558 233 84 15 chr11 51264527 51264658 -70579198 + B1F2 SINE Alu 4 143 -6 5 976 499 263 75 79 chr11 51264658 51264691 -70579165 + L1MB4 LINE L1 6133 6157 -23 5 976 734 187 2 2 chr11 51264697 51264823 -70579033 - RSINE1 SINE B4 -37 128 2 5 976 809 265 51 56 chr11 51264871 51265307 -70578549 + Lx7 LINE L1 7118 7696 0 5 976 234 91 0 0 chr11 51265375 51265408 -70578448 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 5 976 1022 207 25 15 chr11 51266155 51266351 -70577505 - B3A SINE B2 0 198 1 5 976 353 323 6 80 chr11 51266840 51267015 -70576841 + RSINE1 SINE B4 4 165 0 5 976 203 324 36 73 chr11 51267569 51267679 -70576177 + MIRb SINE MIR 28 133 -135 5 976 213 65 0 0 chr11 51267824 51267855 -70576001 + (A)n Simple_repeat Simple_repeat 1 31 0 5 976 373 227 90 11 chr11 51268316 51268405 -70575451 - MLT1A1 LTR MaLR 0 408 313 5 976 511 247 118 20 chr11 51268406 51268482 -70575374 - RMER30 DNA MER1_type -33 169 87 5 976 315 85 0 0 chr11 51268482 51268529 -70575327 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 976 511 247 118 20 chr11 51268529 51268605 -70575251 - RMER30 DNA MER1_type -116 86 3 5 976 881 233 1 2 chr11 51268729 51268895 -70574961 + B3A SINE B2 1 163 -35 5 976 528 68 0 0 chr11 51268895 51268968 -70574888 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 976 486 238 37 99 chr11 51268968 51268992 -70574864 + B2_Mm1a SINE B2 159 179 -14 5 976 1177 25 8 44 chr11 51269065 51269318 -70574538 + (CCCTAA)n Simple_repeat Simple_repeat 1 243 0 5 976 965 261 111 17 chr11 51269440 51269610 -70574246 - MTE2b LTR MaLR -2 377 209 5 976 753 49 0 0 chr11 51269610 51269712 -70574144 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 976 965 261 111 17 chr11 51269712 51269830 -70574026 - MTE2b LTR MaLR -171 208 62 5 976 321 256 0 24 chr11 51269761 51269845 -70574011 - MT2A LTR ERVL -404 129 48 5 976 237 284 161 0 chr11 51269924 51270005 -70573851 - L1M4 LINE L1 -1037 5109 5016 5 976 398 244 0 0 chr11 51270021 51270099 -70573757 - ID4_ SINE ID -4 79 2 5 976 615 213 278 11 chr11 51270643 51270819 -70573037 - ID_B1 SINE B4 0 224 2 5 976 258 217 181 21 chr11 51270828 51270922 -70572934 - L1MA6 LINE L1 -2 6298 6190 5 976 386 314 8 0 chr11 51271168 51271289 -70572567 - Lx8 LINE L1 -334 7139 7018 5 976 807 303 65 23 chr11 51271335 51271768 -70572088 - L1MA6 LINE L1 -190 6110 5660 5 976 466 260 87 0 chr11 51271814 51271918 -70571938 + RSINE1 SINE B4 2 114 -51 5 976 1005 246 14 14 chr11 51272626 51272844 -70571012 - ID_B1 SINE B4 0 224 7 5 976 268 271 78 63 chr11 51272848 51272990 -70570866 - B4A SINE B4 -16 276 133 5 976 212 140 0 23 chr11 51273326 51273370 -70570486 - ID4_ SINE ID -40 43 1 5 976 927 219 211 16 chr11 51273660 51273962 -70569894 - ORR1D1 LTR MaLR -13 361 1 5 976 341 171 88 29 chr11 51273962 51274053 -70569803 - PB1 SINE Alu -34 93 1 5 976 297 0 0 0 chr11 51274424 51274457 -70569399 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 976 800 239 76 5 chr11 51274457 51274655 -70569201 - ID_B1 SINE B4 -11 213 2 5 976 453 19 0 0 chr11 51275161 51275215 -70568641 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 976 519 195 60 26 chr11 51275466 51275582 -70568274 - MTE2a LTR MaLR -14 365 246 6 976 393 287 9 18 chr11 51275923 51276033 -70567823 - MTEa LTR MaLR -19 360 252 6 976 408 171 32 54 chr11 51276040 51276133 -70567723 + PB1D7 SINE Alu 24 114 -6 6 976 252 86 0 0 chr11 51276534 51276569 -70567287 + MIRc SINE MIR 109 143 -125 6 976 743 224 190 17 chr11 51277031 51277263 -70566593 + B4A SINE B4 3 274 -18 6 976 302 0 26 0 chr11 51277280 51277318 -70566538 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 976 737 257 37 14 chr11 51277902 51278119 -70565737 - ID_B1 SINE B4 -1 223 2 6 976 336 24 0 0 chr11 51278167 51278208 -70565648 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 976 400 291 88 15 chr11 51278215 51278351 -70565505 - RSINE1 SINE B4 -17 148 3 6 976 583 313 169 9 chr11 51278382 51278834 -70565022 - L1MB7 LINE L1 -31 6153 5625 6 976 1357 71 38 0 chr11 51279773 51279957 -70563899 - B2_Mm2 SINE B2 -4 191 1 6 976 1003 289 73 32 chr11 51280205 51280548 -70563308 - ORR1E LTR MaLR -2 357 1 6 976 1088 257 28 18 chr11 51281167 51281452 -70562404 - B4 SINE B4 -2 290 3 6 976 333 248 124 0 chr11 51281462 51281591 -70562265 - L1MA7 LINE L1 -6 6285 6141 6 976 304 299 161 0 chr11 51281614 51281751 -70562105 - L1MA7 LINE L1 -227 6064 5906 6 976 469 323 0 54 chr11 51281762 51281929 -70561927 + B4A SINE B4 129 286 -6 6 976 255 61 0 0 chr11 51281943 51281976 -70561880 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 6 976 971 101 7 20 chr11 51285146 51285297 -70558559 + B1_Mur3 SINE Alu 1 149 0 6 976 392 290 20 10 chr11 51285365 51285466 -70558390 + RSINE1 SINE B4 64 165 0 6 976 441 66 0 0 chr11 51285899 51285960 -70557896 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 976 506 307 108 29 chr11 51287287 51287602 -70556254 + MER113 DNA MER1_type 62 401 -120 6 976 471 35 0 0 chr11 51287656 51287713 -70556143 + (TTGG)n Simple_repeat Simple_repeat 2 58 0 6 976 330 220 0 0 chr11 51287728 51287787 -70556069 + RSINE1 SINE B4 4 62 -103 6 976 271 301 0 67 chr11 51288270 51288359 -70555497 + RSINE1 SINE B4 83 165 0 6 976 503 227 180 11 chr11 51288725 51288903 -70554953 - ID_B1 SINE B4 -5 219 12 6 976 644 292 99 13 chr11 51288938 51289240 -70554616 - L1MA6 LINE L1 -45 6255 5928 6 976 198 0 0 0 chr11 51290453 51290475 -70553381 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 6 976 328 295 85 50 chr11 51291244 51291444 -70552412 + B4A SINE B4 1 207 -85 6 976 212 185 0 18 chr11 51291489 51291544 -70552312 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 976 405 0 0 0 chr11 51291680 51291725 -70552131 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 6 976 877 203 78 5 chr11 51291736 51291929 -70551927 - ID_B1 SINE B4 -17 207 1 6 976 371 324 0 9 chr11 51292009 51292115 -70551741 - PB1D10 SINE Alu -9 108 4 6 976 231 243 14 14 chr11 51292133 51292204 -70551652 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 6 976 414 0 0 0 chr11 51292258 51292304 -70551552 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 976 998 72 99 0 chr11 51292485 51292637 -70551219 - B2_Mm2 SINE B2 -28 167 1 6 976 470 137 0 10 chr11 51292890 51292986 -70550870 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 6 976 1077 224 174 3 chr11 51294624 51294928 -70548928 - ORR1E LTR MaLR 0 359 4 6 976 557 339 17 13 chr11 51295859 51296089 -70547767 - L1MC4a LINE L1 -2052 5830 5600 6 976 477 0 0 0 chr11 51296097 51296150 -70547706 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 976 453 254 0 0 chr11 51296190 51296363 -70547493 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 976 296 252 19 6 chr11 51296418 51296574 -70547282 + (TG)n Simple_repeat Simple_repeat 1 158 0 6 976 820 255 83 40 chr11 51296576 51296854 -70547002 - B4A SINE B4 0 292 3 6 976 734 269 0 0 chr11 51296856 51297005 -70546851 - ID_B1 SINE B4 -1 223 75 6 976 246 225 48 36 chr11 51297113 51297196 -70546660 - PB1D9 SINE Alu -5 115 32 6 976 307 319 118 0 chr11 51297241 51297385 -70546471 + RSINE1 SINE B4 1 161 -4 6 976 239 304 0 28 chr11 51297673 51297744 -70546112 - ID4_ SINE ID -14 69 1 6 976 848 236 45 55 chr11 51297759 51297979 -70545877 - B4A SINE B4 -4 288 71 6 976 387 259 8 51 chr11 51297969 51298087 -70545769 + PB1D9 SINE Alu 8 120 0 6 976 270 306 112 71 chr11 51297987 51298156 -70545700 + B4 SINE B4 111 286 -6 6 976 304 165 288 12 chr11 51298416 51298496 -70545360 + ID_B1 SINE B4 103 204 -20 6 976 218 210 106 47 chr11 51298423 51298508 -70545348 + B1_Mur4 SINE Alu 30 119 -31 6 976 190 347 48 24 chr11 51298515 51298639 -70545217 - L2a LINE L2 -95 3331 3205 6 976 236 188 21 0 chr11 51299993 51300041 -70543815 - MER3 DNA MER1_type -2 207 159 6 976 902 193 73 0 chr11 51300102 51300294 -70543562 + ID_B1 SINE B4 1 206 -18 6 976 216 0 0 0 chr11 51300299 51300323 -70543533 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 6 976 322 263 21 10 chr11 51300323 51300419 -70543437 - L1MB7 LINE L1 -47 6127 6031 6 976 1016 199 25 10 chr11 51300474 51300677 -70543179 - B3 SINE B2 -10 206 1 6 976 257 279 16 0 chr11 51300677 51300738 -70543118 + MLT1A1 LTR MaLR 73 134 -274 6 976 838 251 22 27 chr11 51300758 51300983 -70542873 + B4A SINE B4 1 224 -68 6 976 904 100 7 13 chr11 51300989 51301141 -70542715 + (GGGA)n Simple_repeat Simple_repeat 2 152 0 6 976 314 289 38 19 chr11 51301196 51301302 -70542554 - RMER12 LTR ERVK -467 855 748 6 976 374 312 51 0 chr11 51301512 51301650 -70542206 - L1MB7 LINE L1 -166 6018 5874 6 976 450 0 0 0 chr11 51301667 51301717 -70542139 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 976 276 308 119 6 chr11 51301759 51301774 -70542082 - MER3 DNA MER1_type -30 179 165 6 976 876 238 83 32 chr11 51301774 51302052 -70541804 - B4A SINE B4 0 292 1 6 976 276 308 119 6 chr11 51302052 51302196 -70541660 - MER3 DNA MER1_type -45 164 2 6 976 363 246 0 60 chr11 51302920 51303037 -70540819 + B3 SINE B2 5 114 -102 6 976 503 204 84 54 chr11 51303286 51303452 -70540404 - L1MA5A LINE L1 -436 5861 5691 6 976 1720 150 107 0 chr11 51303482 51303809 -70540047 - ORR1C2 LTR MaLR -22 362 1 6 976 2036 89 4 0 chr11 51303851 51304131 -70539725 - ORR1A2 LTR MaLR 0 327 47 6 976 531 218 15 4 chr11 51304142 51304288 -70539568 - L1ME3 LINE L1 -321 5841 5692 6 976 291 91 0 0 chr11 51304291 51304335 -70539521 - ORR1A2 LTR MaLR -283 44 1 6 976 475 251 28 25 chr11 51304335 51304493 -70539363 - B4A SINE B4 -140 152 1 6 976 631 207 52 0 chr11 51304986 51305121 -70538735 + B1_Mur4 SINE Alu 1 142 -8 6 976 338 256 43 85 chr11 51304995 51305136 -70538720 + ID_B1 SINE B4 90 224 0 6 976 561 55 0 0 chr11 51306696 51306769 -70537087 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 6 976 201 74 0 0 chr11 51306772 51306799 -70537057 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 976 634 282 92 0 chr11 51306801 51306975 -70536881 + ID_B1 SINE B4 9 198 -26 6 976 237 232 59 161 chr11 51306874 51306992 -70536864 + PB1 SINE Alu 11 116 -11 6 976 716 253 74 52 chr11 51308332 51308603 -70535253 - B4 SINE B4 -14 278 2 6 976 191 327 199 19 chr11 51308667 51308823 -70535033 - MIRb SINE MIR -71 197 14 6 976 230 222 0 87 chr11 51309374 51309443 -70534413 + ID2 SINE ID 18 80 -3 6 976 702 314 28 19 chr11 51309383 51309582 -70534274 + B4A SINE B4 26 226 -66 6 976 291 360 57 25 chr11 51309582 51309739 -70534117 + RSINE1 SINE B4 3 164 -1 6 976 301 224 17 0 chr11 51309754 51309812 -70534044 + B4A SINE B4 227 285 -7 6 976 182 159 0 43 chr11 51310729 51310775 -70533081 + CT-rich Low_complexity Low_complexity 1 44 0 6 976 319 246 96 30 chr11 51310802 51310955 -70532901 + MTEa LTR MaLR 212 375 -4 6 976 755 246 138 16 chr11 51311206 51311524 -70532332 + ORR1E LTR MaLR 3 359 0 6 976 1789 249 103 10 chr11 51311987 51312490 -70531366 - Lx8 LINE L1 -2 7471 6922 6 976 621 205 51 0 chr11 51312606 51312723 -70531133 + B1_Mur1 SINE Alu 2 124 -25 6 976 363 100 0 41 chr11 51312902 51312975 -70530881 + (TCTCCC)n Simple_repeat Simple_repeat 4 73 0 6 976 382 247 146 61 chr11 51313203 51313367 -70530489 - MIRb SINE MIR -57 211 34 6 976 219 333 0 0 chr11 51314129 51314186 -70529670 + MIRb SINE MIR 120 176 -92 6 976 512 154 10 0 chr11 51314814 51314918 -70528938 + (TGGA)n Simple_repeat Simple_repeat 4 108 0 6 976 348 111 0 0 chr11 51315032 51315086 -70528770 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 6 976 780 32 0 0 chr11 51315161 51315256 -70528600 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 6 976 666 0 0 0 chr11 51315314 51315388 -70528468 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 6 976 818 123 0 24 chr11 51315388 51315505 -70528351 - B1_Mus1 SINE Alu -9 139 23 6 976 923 254 38 13 chr11 51317701 51317924 -70525932 + B4A SINE B4 1 229 -63 6 976 608 257 75 16 chr11 51317924 51318090 -70525766 + B3A SINE B2 1 179 -19 6 976 240 35 0 0 chr11 51318090 51318119 -70525737 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 976 608 257 75 16 chr11 51318119 51318138 -70525718 + B3A SINE B2 180 197 -1 6 976 287 299 0 0 chr11 51318232 51318299 -70525557 + ID4_ SINE ID 2 68 -15 6 976 336 237 26 0 chr11 51318405 51318481 -70525375 + ID4_ SINE ID 6 83 0 6 976 270 260 39 0 chr11 51319457 51319534 -70524322 - ID2 SINE ID -3 80 1 6 976 582 216 86 26 chr11 51319810 51319962 -70523894 + RSINE1 SINE B4 4 164 -1 6 976 822 190 14 110 chr11 51319978 51320197 -70523659 - B3A SINE B2 0 198 1 6 976 216 0 0 0 chr11 51320239 51320263 -70523593 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 976 378 0 0 0 chr11 51320263 51320304 -70523552 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 976 1033 51 0 14 chr11 51320311 51320451 -70523405 + B1_Mus1 SINE Alu 11 148 0 7 976 28 0 0 0 chr11 51321121 51321149 -70522707 + AT_rich Low_complexity Low_complexity 1 28 0 7 976 1067 226 5 0 chr11 51322195 51322399 -70521457 - ID_B1 SINE B4 -5 219 15 7 976 256 289 107 8 chr11 51322496 51322618 -70521238 + MIR3 SINE MIR 13 146 -62 7 976 253 317 28 65 chr11 51322958 51323066 -70520790 + MamRep4096 DNA hAT? 30 133 -293 7 976 345 240 40 58 chr11 51323066 51323266 -70520590 + MIR SINE MIR 4 194 -68 7 976 2401 140 32 10 chr11 51324244 51324648 -70519208 - MTC LTR MaLR -8 413 1 7 976 223 274 16 0 chr11 51324652 51324714 -70519142 + MIRb SINE MIR 40 102 -166 7 976 432 0 0 0 chr11 51324966 51325014 -70518842 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 976 253 154 13 177 chr11 51325049 51325114 -70518742 - B4A SINE B4 -14 278 225 7 976 1007 116 0 0 chr11 51325114 51325261 -70518595 - B1_Mus1 SINE Alu -1 147 1 7 976 253 154 13 177 chr11 51325261 51325274 -70518582 - B4A SINE B4 -68 224 213 7 976 4135 230 74 14 chr11 51325278 51326375 -70517481 - Lx7 LINE L1 -16 7680 6377 7 976 332 321 22 100 chr11 51326382 51326562 -70517294 - B4A SINE B4 -74 218 53 7 976 516 273 14 0 chr11 51326582 51326721 -70517135 - L1MB3 LINE L1 -279 5904 5764 7 976 905 225 52 29 chr11 51327248 51327458 -70516398 + ID_B1 SINE B4 5 219 -5 7 976 252 0 0 0 chr11 51327460 51327488 -70516368 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 7 976 286 246 87 0 chr11 51328094 51328163 -70515693 + Charlie12 DNA MER1_type 20 94 -2779 7 976 911 64 0 0 chr11 51328169 51328294 -70515562 + B1_Mus1 SINE Alu 2 126 -22 7 976 324 0 0 0 chr11 51328315 51328351 -70515505 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 7 976 225 206 95 0 chr11 51329582 51329645 -70514211 - L2 LINE L2 -980 2439 2371 7 976 873 251 14 5 chr11 51329916 51330136 -70513720 - ID_B1 SINE B4 -1 223 2 7 976 185 83 28 0 chr11 51331298 51331334 -70512522 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 7 976 1147 55 7 0 chr11 51331334 51331479 -70512377 - B1_Mus2 SINE Alu 0 147 2 7 976 441 0 0 0 chr11 51331612 51331661 -70512195 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 976 465 203 100 11 chr11 51331703 51331844 -70512012 + B3A SINE B2 1 166 -29 7 976 219 36 0 0 chr11 51331845 51331873 -70511983 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 976 3748 18 81 14 chr11 51333180 51333625 -70510231 - IAPLTR2_Mm LTR ERVK 0 475 1 7 976 540 336 48 68 chr11 51333772 51334066 -70509790 + B4A SINE B4 1 288 -4 7 976 439 250 77 0 chr11 51334172 51334276 -70509580 + B1F SINE Alu 2 113 -36 7 976 278 345 151 0 chr11 51334276 51334311 -70509545 + B4A SINE B4 87 246 -46 7 976 574 334 123 26 chr11 51334315 51334739 -70509117 + L1MA6 LINE L1 5366 5830 -470 7 976 366 235 49 13 chr11 51334758 51334860 -70508996 + B4 SINE B4 173 279 -13 7 976 235 328 47 54 chr11 51334871 51335000 -70508856 - MIRb SINE MIR -48 220 93 7 976 230 0 0 32 chr11 51335567 51335598 -70508258 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 976 1146 121 0 6 chr11 51335603 51335778 -70508078 - B2_Mm2 SINE B2 -20 175 2 7 976 342 0 0 0 chr11 51335917 51335955 -70507901 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 976 181 331 42 63 chr11 51337333 51337475 -70506381 - L2 LINE L2 -1812 1607 1469 7 976 477 0 0 0 chr11 51338009 51338062 -70505794 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 976 636 193 216 0 chr11 51338431 51338612 -70505244 - MER2 DNA MER2_type -55 290 71 7 976 296 189 14 0 chr11 51338617 51338691 -70505165 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 976 837 156 263 0 chr11 51338778 51338957 -70504899 + URR1A DNA MER1_type 1 226 0 7 976 896 245 43 5 chr11 51339591 51339800 -70504056 + ID_B1 SINE B4 8 224 0 7 976 204 239 98 98 chr11 51339813 51339915 -70503941 - L3b LINE CR1 -92 390 289 7 976 22 0 0 0 chr11 51340013 51340035 -70503821 + AT_rich Low_complexity Low_complexity 1 22 0 7 976 198 0 0 0 chr11 51341193 51341215 -70502641 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 7 976 340 248 0 3 chr11 51341969 51342057 -70501799 + PB1D7 SINE Alu 32 118 -2 7 976 289 385 57 14 chr11 51342260 51342471 -70501385 + MIRc SINE MIR 20 239 -29 7 976 407 113 14 0 chr11 51342910 51342981 -70500875 + (TA)n Simple_repeat Simple_repeat 2 73 0 7 976 22 35 0 0 chr11 51342995 51343024 -70500832 + AT_rich Low_complexity Low_complexity 1 29 0 7 976 2349 87 48 3 chr11 51343115 51343427 -70500429 - ORR1A2 LTR MaLR -1 326 1 7 976 226 305 95 25 chr11 51343467 51343625 -70500231 - Tigger5 DNA MER2_type -2219 187 19 7 976 436 207 0 12 chr11 51344738 51344821 -70499035 - ID4 SINE ID 0 83 2 7 976 683 154 0 32 chr11 51344956 51345110 -70498746 + GA-rich Low_complexity Low_complexity 3 151 0 7 976 305 241 0 0 chr11 51345111 51345169 -70498687 + polypurine Low_complexity Low_complexity 1 58 0 7 976 962 252 4 55 chr11 51345171 51345406 -70498450 - B4A SINE B4 -69 223 1 7 976 898 263 28 0 chr11 51345425 51345638 -70498218 + ID_B1 SINE B4 6 224 0 7 976 809 238 90 0 chr11 51345646 51345835 -70498021 + B3 SINE B2 5 210 -6 7 976 408 287 85 20 chr11 51345883 51346036 -70497820 + RSINE1 SINE B4 3 165 0 7 976 1316 39 20 2 chr11 51346049 51346566 -70497290 + (TAGA)n Simple_repeat Simple_repeat 1 526 0 7 976 832 278 92 37 chr11 51347338 51347797 -70496059 - L1ME4a LINE L1 -238 5886 5403 7 976 749 183 8 0 chr11 51347818 51347949 -70495907 - B1_Mur4 SINE Alu 0 150 19 7 976 678 237 161 0 chr11 51348901 51349087 -70494769 + B3 SINE B2 1 216 0 7 976 622 321 31 37 chr11 51349933 51350227 -70493629 + B4A SINE B4 1 292 0 7 976 558 261 0 0 chr11 51350227 51350392 -70493464 + (CA)n Simple_repeat Simple_repeat 1 165 0 7 976 597 225 62 0 chr11 51350470 51350599 -70493257 + B1F1 SINE Alu 13 149 0 7 976 23 0 0 0 chr11 51350599 51350622 -70493234 + AT_rich Low_complexity Low_complexity 1 23 0 7 976 481 278 8 25 chr11 51350726 51350844 -70493012 - ID_B1 SINE B4 -24 200 85 7 976 876 114 11 14 chr11 51350850 51351286 -70492570 + (TG)n Simple_repeat Simple_repeat 1 434 0 7 976 912 103 17 0 chr11 51351297 51351471 -70492385 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 976 650 247 12 31 chr11 51351762 51351925 -70491931 + RSINE1 SINE B4 2 161 -4 7 976 234 0 0 0 chr11 51352244 51352270 -70491586 + (A)n Simple_repeat Simple_repeat 1 26 0 7 976 342 119 155 29 chr11 51353806 51353922 -70489934 - B2_Mm2 SINE B2 0 195 47 7 976 1338 97 11 0 chr11 51353988 51354164 -70489692 - B2_Mm1t SINE B2 -14 179 2 7 976 198 0 0 0 chr11 51354190 51354212 -70489644 + (A)n Simple_repeat Simple_repeat 1 22 0 7 976 899 131 80 0 chr11 51354222 51354359 -70489497 + B1_Mus1 SINE Alu 1 148 0 7 976 330 206 146 63 chr11 51354424 51354537 -70489319 + PB1D7 SINE Alu 5 148 0 7 976 45 96 0 0 chr11 51355018 51355154 -70488702 + AT_rich Low_complexity Low_complexity 1 136 0 7 976 468 111 0 0 chr11 51356532 51356604 -70487252 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 976 676 224 7 34 chr11 51356608 51356756 -70487100 - RSINE1 SINE B4 -19 146 3 7 976 451 278 23 23 chr11 51356765 51356894 -70486962 + RMER30 DNA MER1_type 42 170 -32 7 976 244 263 190 10 chr11 51357568 51357668 -70486188 + PB1D7 SINE Alu 3 120 0 7 976 366 303 56 56 chr11 51357678 51357839 -70486017 + RSINE1 SINE B4 5 165 0 7 976 960 153 0 7 chr11 51357869 51358014 -70485842 + B1_Mus1 SINE Alu 3 146 -2 7 976 318 226 32 11 chr11 51358254 51358340 -70485516 + B3A SINE B2 90 176 -40 7 976 1135 63 28 0 chr11 51358340 51358482 -70485374 + B1_Mm SINE Alu 1 146 -1 7 976 225 276 67 33 chr11 51358482 51358515 -70485341 + B3 SINE B2 177 213 -3 7 976 871 172 7 14 chr11 51358517 51358664 -70485192 + B1_Mur4 SINE Alu 3 148 -2 7 976 246 32 0 0 chr11 51358667 51358698 -70485158 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7 976 988 222 34 0 chr11 51358710 51358917 -70484939 - B3 SINE B2 -2 214 1 7 976 363 23 0 0 chr11 51358938 51358982 -70484874 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 976 1184 35 7 0 chr11 51358982 51359114 -70484742 - B1_Mus2 SINE Alu -9 138 6 7 976 585 219 78 0 chr11 51359139 51359267 -70484589 + B1_Mur1 SINE Alu 2 139 -10 7 976 1080 68 0 0 chr11 51360462 51360594 -70483262 + B1_Mus2 SINE Alu 1 132 -15 7 976 504 0 0 0 chr11 51360611 51360667 -70483189 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 976 268 221 24 94 chr11 51361589 51361674 -70482182 - B1_Mur3 SINE Alu -54 95 17 7 976 742 185 167 0 chr11 51361598 51361760 -70482096 - ID_B1 SINE B4 -33 191 3 7 976 745 162 11 17 chr11 51362605 51362781 -70481075 + C-rich Low_complexity Low_complexity 2 176 0 7 976 726 225 2 0 chr11 51363715 51364298 -70479558 + (TGGA)n Simple_repeat Simple_repeat 1 584 0 7 976 184 254 63 0 chr11 51364964 51365027 -70478829 + MIR SINE MIR 82 148 -60 7 976 403 216 40 40 chr11 51365281 51365382 -70478474 + MIRc SINE MIR 64 164 -104 7 976 217 317 79 0 chr11 51365801 51365935 -70477921 + MIRb SINE MIR 42 189 -79 7 976 227 143 0 39 chr11 51367139 51367190 -70476666 + (CTATT)n Simple_repeat Simple_repeat 4 52 0 7 976 463 217 14 116 chr11 51367551 51367683 -70476173 + B1_Mur2 SINE Alu 17 135 -14 8 976 396 0 0 0 chr11 51367683 51367727 -70476129 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 976 463 217 14 116 chr11 51367727 51367740 -70476116 + B1_Mur2 SINE Alu 136 147 -2 8 976 798 190 37 70 chr11 51368274 51368489 -70475367 + B3 SINE B2 9 216 0 8 976 23 33 0 0 chr11 51368494 51368524 -70475332 + AT_rich Low_complexity Low_complexity 1 30 0 8 976 833 172 14 20 chr11 51368524 51368672 -70475184 + B1_Mur3 SINE Alu 1 147 -2 8 976 341 330 117 16 chr11 51369076 51369264 -70474592 - L1MD2 LINE L1 -15 6344 6138 8 976 288 227 0 0 chr11 51369281 51369406 -70474450 + (TG)n Simple_repeat Simple_repeat 1 125 0 8 976 292 275 135 45 chr11 51369454 51369610 -70474246 - L1MD2 LINE L1 -296 6063 5894 8 976 791 179 27 144 chr11 51369633 51369855 -70474001 - B3A SINE B2 -2 196 1 8 976 457 255 108 20 chr11 51370035 51370183 -70473673 - RSINE1 SINE B4 -4 161 1 8 976 516 230 27 88 chr11 51370190 51370338 -70473518 - ID_B1 SINE B4 -6 218 80 8 976 520 242 25 0 chr11 51370340 51370460 -70473396 - B1F SINE Alu 0 149 27 8 976 243 321 9 9 chr11 51371327 51371440 -70472416 + (CCCTAA)n Simple_repeat Simple_repeat 2 114 0 8 976 297 244 66 16 chr11 51371769 51371890 -70471966 + MIRb SINE MIR 106 232 -36 8 976 1290 220 71 74 chr11 51372029 51372225 -70471631 - MTEb LTR MaLR 0 379 183 8 976 1351 73 67 6 chr11 51372225 51372405 -70471451 - B2_Mm2 SINE B2 -4 191 1 8 976 1290 220 71 74 chr11 51372405 51372586 -70471270 - MTEb LTR MaLR -197 182 3 8 976 196 100 50 0 chr11 51372959 51372999 -70470857 + (CCCCCA)n Simple_repeat Simple_repeat 5 46 0 8 976 565 300 30 24 chr11 51373152 51373178 -70470678 - RSINE1 SINE B4 0 165 141 8 976 336 64 0 0 chr11 51373178 51373225 -70470631 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 976 565 300 30 24 chr11 51373225 51373362 -70470494 - RSINE1 SINE B4 -25 140 1 8 976 240 208 57 0 chr11 51373363 51373416 -70470440 - PB1D7 SINE Alu 0 120 65 8 976 513 183 11 0 chr11 51373369 51373462 -70470394 - ID_B1 SINE B4 -6 218 125 8 976 917 139 15 0 chr11 51373803 51373940 -70469916 - B1_Mus1 SINE Alu -9 139 1 8 976 655 272 70 109 chr11 51373941 51374300 -70469556 - L1MC1 LINE L1 0 6333 6014 8 976 597 266 96 16 chr11 51374315 51374502 -70469354 + B4A SINE B4 45 246 -46 8 976 333 0 0 0 chr11 51374571 51374608 -70469248 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 976 489 88 0 0 chr11 51375173 51375253 -70468603 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 976 198 308 138 0 chr11 51375591 51375656 -70468200 + MER5A DNA MER1_type 4 77 -112 8 976 689 223 176 26 chr11 51375657 51375850 -70468006 + ID_B1 SINE B4 3 224 0 8 976 279 246 43 0 chr11 51375850 51375919 -70467937 + G-rich Low_complexity Low_complexity 5 76 0 8 976 206 255 0 0 chr11 51376200 51376247 -70467609 + L2b LINE L2 3329 3375 0 8 976 532 246 2 0 chr11 51376897 51377016 -70466840 + PB1D7 SINE Alu 9 130 -20 8 976 825 210 0 0 chr11 51377082 51377225 -70466631 + B1_Mur3 SINE Alu 2 144 -5 8 976 783 155 280 0 chr11 51377240 51377408 -70466448 + B3 SINE B2 2 216 0 8 976 958 167 0 0 chr11 51377431 51377575 -70466281 + B1_Mur4 SINE Alu 5 148 -2 8 976 1211 68 0 0 chr11 51377580 51377726 -70466130 + B1_Mus2 SINE Alu 2 147 0 8 976 216 86 0 0 chr11 51377726 51377761 -70466095 + (A)n Simple_repeat Simple_repeat 1 35 0 8 976 251 289 128 88 chr11 51377838 51377986 -70465870 + B4 SINE B4 139 292 0 8 976 213 211 0 0 chr11 51378000 51378038 -70465818 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 976 207 0 0 0 chr11 51378828 51378851 -70465005 + (T)n Simple_repeat Simple_repeat 1 23 0 8 976 878 137 14 7 chr11 51378864 51379011 -70464845 + B2_Mm2 SINE B2 42 189 -6 8 976 1588 48 5 0 chr11 51379021 51379209 -70464647 + B2_Mm1t SINE B2 1 189 -4 8 976 321 190 0 0 chr11 51379404 51379462 -70464394 - B3A SINE B2 -140 58 1 8 976 972 150 6 6 chr11 51379616 51379784 -70464072 - B3A SINE B2 -30 168 1 8 976 321 89 0 0 chr11 51379997 51380042 -70463814 + (T)n Simple_repeat Simple_repeat 1 45 0 8 977 2221 135 26 6 chr11 51380287 51380637 -70463219 - RLTR15 LTR ERVK 0 359 3 8 977 301 274 60 75 chr11 51380810 51380944 -70462912 + B4A SINE B4 77 208 -84 8 977 793 177 14 0 chr11 51381036 51381183 -70462673 + B1_Mur2 SINE Alu 1 149 0 8 977 181 356 27 0 chr11 51381631 51381704 -70462152 - L4 LINE RTE -170 1859 1785 8 977 197 122 49 0 chr11 51382023 51382064 -70461792 + (GTGTG)n Simple_repeat Simple_repeat 5 47 0 8 977 360 0 0 0 chr11 51383682 51383722 -70460134 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 977 605 188 36 0 chr11 51383820 51383932 -70459924 + B2_Mm2 SINE B2 2 117 -78 8 977 322 240 13 0 chr11 51384027 51384102 -70459754 + ID4_ SINE ID 8 83 0 8 977 930 179 114 16 chr11 51384121 51384314 -70459542 + B3 SINE B2 5 216 0 8 977 225 0 0 0 chr11 51384445 51384470 -70459386 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 977 459 0 0 0 chr11 51385119 51385170 -70458686 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 977 330 140 0 66 chr11 51385425 51385486 -70458370 + B2_Mm2 SINE B2 1 57 -138 8 977 243 0 0 0 chr11 51386808 51386835 -70457021 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 977 2512 129 43 22 chr11 51386835 51387279 -70456577 - RMER6B LTR ERVK -8 453 1 8 977 1198 157 21 8 chr11 51388281 51388805 -70455051 + (TGGA)n Simple_repeat Simple_repeat 1 530 0 8 977 513 0 0 0 chr11 51388965 51389022 -70454834 + (TAA)n Simple_repeat Simple_repeat 2 58 0 8 977 213 121 0 0 chr11 51390048 51390081 -70453775 + (A)n Simple_repeat Simple_repeat 1 33 0 8 977 289 227 72 0 chr11 51391582 51391679 -70452177 + PB1D10 SINE Alu 5 108 -9 8 977 691 258 135 12 chr11 51391690 51391949 -70451907 + B4 SINE B4 1 291 -1 8 977 429 36 0 0 chr11 51391949 51392004 -70451852 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 8 977 503 27 0 39 chr11 51392426 51392503 -70451353 - L1Md_F2 LINE L1 -6 6576 6503 8 977 527 311 199 22 chr11 51394958 51395234 -70448622 - MLT1G3 LTR MaLR -262 333 9 8 977 694 330 14 5 chr11 51395238 51395448 -70448408 - ID_B1 SINE B4 -11 213 2 8 977 379 303 95 24 chr11 51396089 51396258 -70447598 - MIRc SINE MIR -34 234 54 8 977 485 220 30 0 chr11 51396978 51397078 -70446778 - PB1D10 SINE Alu -10 107 5 8 977 429 199 99 35 chr11 51397270 51397411 -70446445 + L1MB3 LINE L1 6034 6183 0 8 977 260 281 80 22 chr11 51397678 51397816 -70446040 + MIR3 SINE MIR 34 179 -29 8 977 525 191 8 57 chr11 51399556 51399678 -70444178 + B1_Mur3 SINE Alu 29 144 -5 8 977 598 165 172 8 chr11 51400911 51401039 -70442817 + B1_Mur4 SINE Alu 2 150 0 8 977 837 216 41 21 chr11 51401117 51401311 -70442545 - B3 SINE B2 -17 199 2 8 977 616 234 154 23 chr11 51402009 51402184 -70441672 + B3 SINE B2 11 208 -8 8 977 1241 109 38 0 chr11 51402200 51402383 -70441473 - B2_Mm2 SINE B2 -5 190 1 8 977 718 178 68 36 chr11 51402419 51402611 -70441245 + B3A SINE B2 1 198 0 8 977 415 113 84 0 chr11 51402635 51402706 -70441150 + B2_Mm2 SINE B2 105 181 -14 8 977 1098 49 14 0 chr11 51402706 51402850 -70441006 + B1_Mus1 SINE Alu 2 147 -1 8 977 1273 96 43 0 chr11 51402851 51403038 -70440818 + B2_Mm2 SINE B2 1 195 0 8 977 721 200 14 7 chr11 51403143 51403289 -70440567 + B1_Mur1 SINE Alu 3 149 0 8 977 180 0 0 0 chr11 51403570 51403590 -70440266 + (T)n Simple_repeat Simple_repeat 1 20 0 8 977 285 206 16 0 chr11 51403818 51403881 -70439975 - MLT1B LTR MaLR -11 379 316 8 977 548 178 30 201 chr11 51403881 51403927 -70439929 + B1_Mur4 SINE Alu 11 55 -95 8 977 1307 94 5 0 chr11 51403927 51404118 -70439738 + B2_Mm2 SINE B2 1 192 -3 8 977 548 178 30 201 chr11 51404118 51404240 -70439616 + B1_Mur4 SINE Alu 56 150 0 8 977 424 309 40 57 chr11 51404287 51404462 -70439394 - MLT1B LTR MaLR -218 172 1 8 977 390 220 16 99 chr11 51404565 51404686 -70439170 + MT2B LTR ERVL 147 257 -344 8 977 982 65 22 0 chr11 51404590 51404729 -70439127 + B1_Mur4 SINE Alu 9 150 0 8 977 271 299 36 0 chr11 51405240 51405367 -70438489 - MIRb SINE MIR -35 173 49 8 977 958 173 124 10 chr11 51405850 51406043 -70437813 - B3 SINE B2 -1 215 1 8 977 281 237 0 17 chr11 51406076 51406136 -70437720 + B1_Mus2 SINE Alu 1 59 -88 8 977 837 132 15 0 chr11 51406448 51406584 -70437272 + B1_Mus1 SINE Alu 11 148 0 8 977 374 252 61 0 chr11 51407766 51407865 -70435991 - PB1D9 SINE Alu -14 106 2 8 977 1048 67 0 0 chr11 51408049 51408184 -70435672 - B1_Mus1 SINE Alu -13 135 1 8 977 1353 56 50 0 chr11 51408194 51408374 -70435482 - B2_Mm1a SINE B2 -3 190 2 8 977 217 271 28 28 chr11 51408912 51408984 -70434872 - B4 SINE B4 -219 73 2 8 977 342 311 72 22 chr11 51409286 51409467 -70434389 - L1M5 LINE L1 -521 5719 5530 8 977 318 224 0 29 chr11 51409725 51409794 -70434062 - RSINE1 SINE B4 -46 119 53 8 977 471 248 32 16 chr11 51410093 51410216 -70433640 - B1_Mus1 SINE Alu -21 127 3 8 977 372 267 118 96 chr11 51410216 51410269 -70433587 - ID_B1 SINE B4 -1 221 42 8 977 289 297 133 17 chr11 51410240 51410306 -70433550 + ID SINE ID 5 84 -140 8 977 339 244 12 39 chr11 51410306 51410406 -70433450 + PB1D9 SINE Alu 1 97 -50 8 977 299 300 0 36 chr11 51410661 51410744 -70433112 + ID2 SINE ID 3 82 -1 9 977 662 298 23 89 chr11 51410882 51411184 -70432672 + B4 SINE B4 11 292 0 9 977 290 278 35 69 chr11 51411184 51411300 -70432556 - PB1D9 SINE Alu -8 112 1 9 977 665 215 0 22 chr11 51411308 51411446 -70432410 - B1_Mus1 SINE Alu -8 140 6 9 977 474 210 48 29 chr11 51412723 51412826 -70431030 + B1_Mur4 SINE Alu 6 110 -40 9 977 218 358 49 0 chr11 51413253 51413334 -70430522 + PB1D10 SINE Alu 20 104 -13 9 977 355 102 55 55 chr11 51413394 51413467 -70430389 + B1_Mm SINE Alu 75 147 0 9 977 895 62 45 37 chr11 51413901 51414035 -70429821 + B1_Mus2 SINE Alu 2 136 -11 9 977 186 100 0 0 chr11 51415149 51415179 -70428677 - MIRb SINE MIR -210 58 29 9 977 22 0 0 0 chr11 51416517 51416539 -70427317 + AT_rich Low_complexity Low_complexity 1 22 0 9 977 231 262 56 56 chr11 51416540 51416629 -70427227 + B4 SINE B4 79 167 -125 9 977 403 209 119 25 chr11 51416559 51416677 -70427179 + B1_Mur2 SINE Alu 13 141 -8 9 977 981 61 8 22 chr11 51417076 51417210 -70426646 + B1_Mm SINE Alu 1 132 -15 9 977 686 55 0 0 chr11 51417372 51417463 -70426393 + B1_Mus1 SINE Alu 35 125 -23 9 977 267 226 29 106 chr11 51417672 51417776 -70426080 - B3 SINE B2 -115 101 6 9 977 24 32 0 0 chr11 51419754 51419785 -70424071 + GC_rich Low_complexity Low_complexity 1 31 0 9 977 21 57 0 0 chr11 51419933 51419968 -70423888 + GC_rich Low_complexity Low_complexity 1 35 0 9 977 22 80 0 0 chr11 51420114 51420164 -70423692 + GC_rich Low_complexity Low_complexity 1 50 0 9 977 322 225 52 35 chr11 51420972 51421087 -70422769 - PB1D10 SINE Alu 0 117 1 9 977 464 237 26 17 chr11 51421387 51421525 -70422331 - B1_Mur1 SINE Alu 0 150 11 9 977 243 79 0 0 chr11 51421541 51421579 -70422277 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 9 977 571 116 20 89 chr11 51421579 51421747 -70422109 - B1_Mm SINE Alu -2 147 1 9 977 384 284 64 137 chr11 51421747 51421813 -70422043 - B4A SINE B4 -235 57 9 9 977 1183 48 0 0 chr11 51421848 51421995 -70421861 - B1_Mus2 SINE Alu 0 147 1 9 977 561 233 0 32 chr11 51421995 51422119 -70421737 - B1_Mur2 SINE Alu -1 148 29 9 977 511 176 0 0 chr11 51422135 51422220 -70421636 - B1_Mur4 SINE Alu -6 144 60 9 977 477 0 0 0 chr11 51422220 51422273 -70421583 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 9 977 276 265 108 0 chr11 51422540 51422623 -70421233 + B4 SINE B4 5 96 -196 9 977 452 228 134 31 chr11 51422632 51422759 -70421097 + B1_Mur1 SINE Alu 5 144 -5 9 977 270 193 0 0 chr11 51422767 51422824 -70421032 + GA-rich Low_complexity Low_complexity 2 58 0 9 977 918 191 113 5 chr11 51422861 51423056 -70420800 + B3 SINE B2 1 216 0 9 977 490 302 19 61 chr11 51423056 51423273 -70420583 + B4A SINE B4 83 286 -6 9 977 250 254 15 0 chr11 51423276 51423343 -70420513 + B4A SINE B4 216 283 -9 9 977 1082 50 43 0 chr11 51423461 51423601 -70420255 - B1_Mus1 SINE Alu 0 148 3 9 977 1136 85 85 0 chr11 51423677 51423854 -70420002 + B2_Mm1t SINE B2 1 192 -1 9 977 905 87 0 0 chr11 51423857 51423983 -70419873 + B2_Mm2 SINE B2 1 126 -69 9 977 1481 38 0 0 chr11 51423997 51424181 -70419675 + B2_Mm1t SINE B2 4 187 -6 9 977 592 269 51 11 chr11 51424228 51424405 -70419451 + B3A SINE B2 8 191 -7 9 977 494 244 229 17 chr11 51424430 51424605 -70419251 - B3 SINE B2 -4 212 1 9 977 668 153 6 17 chr11 51424613 51424786 -70419070 + (TA)n Simple_repeat Simple_repeat 1 171 0 9 977 1011 93 0 7 chr11 51424794 51424935 -70418921 + B1_Mus2 SINE Alu 1 140 -7 9 977 467 248 83 0 chr11 51424972 51425093 -70418763 - B1_Mur1 SINE Alu -18 131 1 9 977 639 239 161 0 chr11 51425109 51425289 -70418567 + B3 SINE B2 1 209 -7 9 977 248 171 49 0 chr11 51425314 51425384 -70418472 - B3A SINE B2 -116 79 2 9 977 235 263 0 0 chr11 51425494 51425551 -70418305 + ID4 SINE ID 5 61 -22 9 977 459 292 93 10 chr11 51425581 51425775 -70418081 - ID_B1 SINE B4 -13 211 2 9 977 1095 94 0 0 chr11 51425925 51426291 -70417565 + (CA)n Simple_repeat Simple_repeat 1 366 0 9 977 757 232 75 11 chr11 51426762 51426949 -70416907 + ID_B1 SINE B4 2 200 -24 9 977 274 347 25 8 chr11 51426846 51426965 -70416891 + B1_Mur3 SINE Alu 17 137 -12 9 977 302 319 11 32 chr11 51427063 51427157 -70416699 + B4A SINE B4 1 92 -200 9 977 429 239 0 84 chr11 51427147 51427266 -70416590 + B1F1 SINE Alu 41 149 0 9 977 799 181 204 6 chr11 51427300 51427472 -70416384 + B3 SINE B2 1 206 -10 9 977 1186 34 0 7 chr11 51427483 51427630 -70416226 + B1_Mus2 SINE Alu 2 147 0 9 977 301 287 128 0 chr11 51427664 51427758 -70416098 + B4A SINE B4 82 187 -105 9 977 935 86 0 122 chr11 51428588 51428760 -70415096 + B2_Mm2 SINE B2 2 152 -43 9 977 339 275 158 66 chr11 51429662 51429814 -70414042 - ID_B1 SINE B4 -53 171 6 9 977 1136 36 0 0 chr11 51429845 51429984 -70413872 + B1_Mus2 SINE Alu 2 140 -7 9 977 242 62 0 0 chr11 51430001 51430033 -70413823 + ORR1A3 LTR MaLR 272 303 -23 9 977 4878 122 38 18 chr11 51430027 51430501 -70413355 - RMER12 LTR ERVK -464 858 386 9 977 1114 75 0 0 chr11 51430501 51430648 -70413208 - B1_Mus2 SINE Alu 0 147 1 9 977 4878 122 38 18 chr11 51430648 51430983 -70412873 - RMER12 LTR ERVK -937 385 28 9 977 1349 71 22 0 chr11 51430983 51431167 -70412689 - B2_Mm1a SINE B2 -4 189 2 9 977 4878 122 38 18 chr11 51431167 51431197 -70412659 - RMER12 LTR ERVK -1295 27 1 9 977 333 281 10 20 chr11 51431198 51431296 -70412560 - MER44D DNA MER2_type -587 118 22 9 977 412 291 147 40 chr11 51431862 51432153 -70411703 - MLT1E3 LTR MaLR -10 617 329 9 977 427 252 35 18 chr11 51432196 51432309 -70411547 - B3 SINE B2 0 216 102 9 977 230 51 51 0 chr11 51432311 51432350 -70411506 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 9 977 1132 61 0 13 chr11 51432370 51432519 -70411337 - B1_Mus1 SINE Alu 0 148 2 9 977 818 168 28 0 chr11 51432554 51432697 -70411159 - B1_Mus1 SINE Alu 0 148 2 9 977 473 121 109 100 chr11 51432702 51432812 -70411044 - B1_Mur1 SINE Alu -23 126 16 9 977 292 275 15 29 chr11 51433666 51433771 -70410085 - ID4_ SINE ID -28 124 15 9 977 299 139 253 0 chr11 51434128 51434207 -70409649 + PB1D9 SINE Alu 21 119 -1 9 977 457 229 74 33 chr11 51434321 51434443 -70409413 - B3 SINE B2 -10 206 80 9 977 1083 88 0 0 chr11 51434498 51434645 -70409211 - B1_Mus2 SINE Alu 0 147 1 9 977 207 0 0 0 chr11 51434649 51434672 -70409184 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 977 546 300 26 7 chr11 51434981 51435132 -70408724 - RSINE1 SINE B4 -2 163 10 9 977 223 280 163 64 chr11 51438210 51438351 -70405505 - RSINE1 SINE B4 0 165 11 9 977 391 239 111 0 chr11 51438243 51438360 -70405496 - B3A SINE B2 -68 130 1 9 977 498 33 0 0 chr11 51439659 51439719 -70404137 + (TC)n Simple_repeat Simple_repeat 1 60 0 9 977 432 0 0 0 chr11 51439719 51439766 -70404090 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 977 28 0 0 0 chr11 51439784 51439812 -70404044 + AT_rich Low_complexity Low_complexity 1 28 0 9 977 701 230 0 13 chr11 51439815 51439965 -70403891 + B2_Mm2 SINE B2 3 150 -45 9 977 403 197 101 53 chr11 51440867 51440980 -70402876 + B1F2 SINE Alu 24 142 -8 9 977 339 189 181 43 chr11 51441000 51441094 -70402762 + PB1D10 SINE Alu 2 108 -9 9 977 563 180 63 0 chr11 51441691 51441802 -70402054 - B1_Mur4 SINE Alu -6 144 27 9 977 1370 60 11 0 chr11 51441876 51442059 -70401797 - B2_Mm1t SINE B2 -8 185 1 9 977 707 184 66 0 chr11 51442096 51442232 -70401624 + B1_Mur2 SINE Alu 5 149 0 9 977 530 221 83 8 chr11 51442289 51442421 -70401435 - RSINE1 SINE B4 -21 144 3 9 977 349 287 121 9 chr11 51442576 51442814 -70401042 + L1MB7 LINE L1 5612 5886 -558 9 977 758 119 110 15 chr11 51443311 51443447 -70400409 + B1_Mur3 SINE Alu 1 149 0 9 977 282 183 58 106 chr11 51443534 51443638 -70400218 + B1_Mus2 SINE Alu 40 138 -9 9 977 429 186 176 0 chr11 51443649 51443751 -70400105 - B3A SINE B2 -78 120 1 9 977 609 242 5 136 chr11 51443787 51443925 -70399931 - B4 SINE B4 -75 217 92 9 977 742 230 102 5 chr11 51443925 51444122 -70399734 - B3 SINE B2 0 216 1 9 977 609 242 5 136 chr11 51444122 51444174 -70399682 - B4 SINE B4 -201 91 52 9 977 464 213 107 111 chr11 51444787 51445067 -70398789 - B4 SINE B4 -11 281 3 9 977 641 303 31 13 chr11 51445573 51445797 -70398059 - MIR SINE MIR -2 260 33 9 977 341 256 86 0 chr11 51446155 51446272 -70397584 + RSINE1 SINE B4 17 143 -22 9 977 369 287 0 0 chr11 51446321 51446429 -70397427 + PB1D9 SINE Alu 1 108 -12 9 977 1070 82 0 7 chr11 51446431 51446579 -70397277 + B1_Mus1 SINE Alu 2 148 0 9 977 198 0 0 0 chr11 51446582 51446604 -70397252 + (GAA)n Simple_repeat Simple_repeat 2 23 0 9 977 477 0 0 0 chr11 51446605 51446658 -70397198 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 9 977 1185 48 0 0 chr11 51446725 51446872 -70396984 - B1_Mus2 SINE Alu 0 147 1 9 977 501 217 0 36 chr11 51446933 51447043 -70396813 - RSINE1 SINE B4 -50 115 10 9 977 579 114 0 0 chr11 51447179 51447267 -70396589 - B1_Mus2 SINE Alu -51 96 9 9 977 414 196 0 110 chr11 51447183 51447292 -70396564 - MT2B LTR ERVL -354 247 151 9 977 406 346 30 74 chr11 51447284 51447515 -70396341 - ID_B1 SINE B4 -2 222 2 1 977 233 229 0 0 chr11 51447622 51447670 -70396186 - B1_Mur3 SINE Alu -51 98 51 1 977 790 197 69 20 chr11 51448056 51448258 -70395598 + B3 SINE B2 1 212 -4 1 977 708 183 8 15 chr11 51448275 51448408 -70395448 + B1_Mm SINE Alu 2 133 -14 1 977 664 188 19 77 chr11 51448463 51448619 -70395237 + B1_Mur2 SINE Alu 2 148 -1 1 977 189 298 201 6 chr11 51448672 51448841 -70395015 + L2a LINE L2 2943 3144 -282 1 977 344 188 0 36 chr11 51449597 51449680 -70394176 + PB1D7 SINE Alu 40 119 -1 1 977 217 302 19 68 chr11 51449679 51449782 -70394074 + PB1D7 SINE Alu 1 98 -22 1 977 572 296 81 43 chr11 51449953 51450211 -70393645 + B4A SINE B4 24 291 -1 1 977 440 171 26 0 chr11 51450384 51450460 -70393396 + B1_Mus2 SINE Alu 1 78 -69 1 977 222 118 0 0 chr11 51450461 51450495 -70393361 + (A)n Simple_repeat Simple_repeat 1 34 0 1 977 1023 82 0 0 chr11 51450496 51450630 -70393226 + B1_Mus1 SINE Alu 1 134 -14 1 977 710 33 22 0 chr11 51450630 51450722 -70393134 + (GAAA)n Simple_repeat Simple_repeat 1 94 0 1 977 313 173 42 119 chr11 51450725 51450843 -70393013 - PB1D10 SINE Alu -6 111 3 1 977 1054 63 0 0 chr11 51450900 51451042 -70392814 - B1_Mus2 SINE Alu 0 147 6 1 977 266 0 29 0 chr11 51451057 51451091 -70392765 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 977 1211 51 0 0 chr11 51451092 51451248 -70392608 - B2_Mm2 SINE B2 -39 156 1 1 977 22 0 0 0 chr11 51452076 51452098 -70391758 + AT_rich Low_complexity Low_complexity 1 22 0 1 977 795 278 52 11 chr11 51452114 51452383 -70391473 + B4A SINE B4 5 284 -8 1 977 192 77 0 0 chr11 51452621 51452647 -70391209 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 977 1168 41 0 13 chr11 51452790 51452939 -70390917 + B1_Mus1 SINE Alu 2 148 0 1 977 727 217 124 5 chr11 51453211 51453396 -70390460 - B3 SINE B2 -8 208 2 1 977 441 219 42 0 chr11 51455239 51455335 -70388521 + B1_Mur4 SINE Alu 51 150 0 1 977 353 290 19 9 chr11 51455529 51455637 -70388219 + PB1D10 SINE Alu 9 117 0 1 977 229 258 129 40 chr11 51455655 51455756 -70388100 + PB1D9 SINE Alu 11 120 0 1 977 180 85 41 41 chr11 51455760 51455781 -70388075 + polypurine Low_complexity Low_complexity 1 21 0 1 977 1153 68 0 0 chr11 51455781 51455928 -70387928 + B1_Mm SINE Alu 1 147 0 1 977 180 85 41 41 chr11 51455928 51455955 -70387901 + polypurine Low_complexity Low_complexity 22 49 0 1 977 389 253 0 0 chr11 51458341 51458420 -70385436 - ID4 SINE ID 0 83 5 1 977 251 150 0 0 chr11 51461412 51461452 -70382404 - B1_Mur4 SINE Alu -110 40 1 1 977 238 250 11 91 chr11 51461482 51461570 -70382286 - MIRb SINE MIR -140 128 48 1 977 297 0 0 0 chr11 51462335 51462368 -70381488 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 977 264 315 33 0 chr11 51464850 51464942 -70378914 - MER102c DNA MER1_type -1 330 236 1 977 306 0 0 0 chr11 51465017 51465051 -70378805 + (GGGTG)n Simple_repeat Simple_repeat 5 38 0 1 977 734 221 44 69 chr11 51465064 51465268 -70378588 + B3 SINE B2 6 204 -12 1 977 734 254 89 7 chr11 51465314 51465584 -70378272 + L1MB5 LINE L1 5596 5887 -287 1 977 288 236 14 27 chr11 51465739 51465813 -70378043 + ID4 SINE ID 2 74 -9 1 977 1090 52 25 13 chr11 51466407 51466564 -70377292 + B2_Mm2 SINE B2 3 161 -34 1 977 507 65 10 61 chr11 51466565 51466664 -70377192 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 977 426 155 486 0 chr11 51466845 51466987 -70376869 - B3 SINE B2 -5 211 1 1 977 180 0 0 0 chr11 51466998 51467018 -70376838 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 977 485 232 18 9 chr11 51467018 51467124 -70376732 - ID_B1 SINE B4 -12 212 106 1 977 395 301 12 31 chr11 51467204 51467365 -70376491 - RSINE1 SINE B4 -6 159 2 1 977 477 0 0 0 chr11 51467858 51467911 -70375945 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 977 345 262 26 53 chr11 51469218 51469331 -70374525 - PB1D10 SINE Alu -7 110 1 1 977 226 260 0 94 chr11 51469331 51469430 -70374426 + LTR48 LTR ERV1 399 489 -298 1 977 441 0 0 0 chr11 51469484 51469533 -70374323 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1 977 710 204 0 21 chr11 51469533 51469669 -70374187 - B1_Mm SINE Alu -12 135 2 1 977 889 246 23 14 chr11 51469674 51469892 -70373964 - ID_B1 SINE B4 0 224 5 1 977 246 298 89 30 chr11 51469948 51469974 -70373882 - B4A SINE B4 -149 143 1 1 977 555 202 28 0 chr11 51469974 51470083 -70373773 - B3A SINE B2 -86 112 1 1 977 238 208 42 0 chr11 51471186 51471234 -70372622 + ID_B1 SINE B4 154 203 -21 1 977 270 247 24 36 chr11 51471396 51471480 -70372376 - L1MC5 LINE L1 -153 7808 7726 1 977 1092 38 0 0 chr11 51471504 51471635 -70372221 - B1_Mus1 SINE Alu -16 132 2 1 977 602 207 33 0 chr11 51471734 51471855 -70372001 - B1_Mur1 SINE Alu -18 131 7 1 977 254 367 62 0 chr11 51471748 51471876 -70371980 - B4 SINE B4 -88 204 69 1 977 311 121 17 0 chr11 51473168 51473226 -70370630 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 977 313 307 11 33 chr11 51473295 51473386 -70370470 + B3A SINE B2 29 117 -81 1 977 525 197 101 43 chr11 51473458 51473596 -70370260 - B1_Mus2 SINE Alu 0 147 2 1 977 303 28 0 0 chr11 51473597 51473633 -70370223 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 977 216 0 0 0 chr11 51473633 51473656 -70370200 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 977 1025 59 0 0 chr11 51473683 51473818 -70370038 + B1_Mm SINE Alu 13 147 0 1 977 28 0 0 0 chr11 51473821 51473849 -70370007 + AT_rich Low_complexity Low_complexity 1 28 0 1 977 411 124 18 9 chr11 51473857 51473942 -70369914 + B1_Mus2 SINE Alu 36 146 -1 1 977 1006 127 71 11 chr11 51473945 51474128 -70369728 + B2_Mm2 SINE B2 2 195 0 1 977 387 285 149 19 chr11 51474139 51474293 -70369563 + RCHARR1 DNA MER1_type 801 974 0 1 977 460 307 129 0 chr11 51474608 51474771 -70369085 - ID_B1 SINE B4 0 224 41 1 977 461 237 152 0 chr11 51474944 51475062 -70368794 - B1_Mur1 SINE Alu -1 148 13 1 977 22 0 0 0 chr11 51475077 51475099 -70368757 + AT_rich Low_complexity Low_complexity 1 22 0 1 977 725 196 35 0 chr11 51475102 51475245 -70368611 + B1_Mur2 SINE Alu 1 148 -1 1 977 271 314 11 11 chr11 51475443 51475530 -70368326 + B4A SINE B4 88 174 -118 1 977 1168 48 7 0 chr11 51475734 51475880 -70367976 + B1_Mus2 SINE Alu 1 147 0 1 977 1551 47 0 0 chr11 51475880 51476073 -70367783 + B2_Mm1a SINE B2 1 193 0 1 977 540 0 0 0 chr11 51476081 51476141 -70367715 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 977 351 248 101 37 chr11 51476142 51476251 -70367605 - B3A SINE B2 -82 116 1 1 977 400 303 143 83 chr11 51476580 51476965 -70366891 - LTR33A_ LTR ERVL -10 521 114 1 977 256 178 14 14 chr11 51477142 51477216 -70366640 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 977 468 276 116 98 chr11 51477216 51477283 -70366573 - B4 SINE B4 0 292 232 1 977 183 42 0 0 chr11 51477283 51477307 -70366549 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 977 825 47 0 0 chr11 51477313 51477420 -70366436 - B1_Mur4 SINE Alu 0 150 44 1 977 468 276 116 98 chr11 51477420 51477516 -70366340 - B4 SINE B4 -61 220 12 1 977 680 180 9 103 chr11 51477575 51477784 -70366072 - B3 SINE B2 -7 188 1 1 977 1229 66 48 32 chr11 51477789 51477815 -70366041 - B2_Mm1t SINE B2 0 193 159 1 977 855 32 187 0 chr11 51477815 51477938 -70365918 - B1_Mm SINE Alu 0 147 2 1 977 225 0 0 0 chr11 51477942 51477967 -70365889 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 977 1229 66 48 32 chr11 51477967 51478124 -70365732 - B2_Mm1t SINE B2 -35 158 2 1 977 867 180 32 11 chr11 51478191 51478376 -70365480 - B2_Mm2 SINE B2 -4 191 3 1 977 371 278 43 9 chr11 51478429 51478545 -70365311 - RSINE1 SINE B4 -4 161 42 1 977 2659 15 95 6 chr11 51478547 51478884 -70364972 - IAPLTR1_Mm LTR ERVK 0 367 1 1 977 27962 21 1 1 chr11 51478884 51482155 -70361701 - IAPEz-int LTR ERVK 0 6481 3210 1 977 7585 102 77 14 chr11 51482154 51483383 -70360473 - IAPEz-int LTR ERVK -5168 1313 8 1 977 2659 15 95 6 chr11 51483383 51483720 -70360136 - IAPLTR1_Mm LTR ERVK 0 367 1 1 977 547 165 130 0 chr11 51483918 51484033 -70359823 - B1_Mur2 SINE Alu -1 148 19 1 977 219 246 123 0 chr11 51483984 51484049 -70359807 - B4 SINE B4 -140 152 80 1 977 441 0 0 0 chr11 51484242 51484291 -70359565 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 977 1124 37 0 0 chr11 51484291 51484427 -70359429 - B1_Mus2 SINE Alu -10 137 2 1 977 702 247 22 11 chr11 51484477 51484657 -70359199 - B3A SINE B2 -16 182 1 1 977 259 322 68 11 chr11 51484657 51484745 -70359111 - B4A SINE B4 -197 95 3 1 977 2308 139 45 0 chr11 51484838 51485212 -70358644 - ORR1B1 LTR MaLR 0 394 4 1 977 263 290 29 0 chr11 51485281 51485350 -70358506 - ID4_ SINE ID -11 72 2 1 977 929 198 56 0 chr11 51485365 51485562 -70358294 - B3 SINE B2 -1 215 8 1 977 699 229 0 0 chr11 51485587 51485841 -70358015 + (TG)n Simple_repeat Simple_repeat 1 254 0 1 977 488 184 8 95 chr11 51485845 51485971 -70357885 - B4A SINE B4 0 292 178 1 977 1284 103 5 0 chr11 51486046 51486231 -70357625 - B2_Mm1t SINE B2 -7 186 1 1 977 838 162 81 0 chr11 51486434 51486607 -70357249 - B2_Mm2 SINE B2 0 195 9 1 977 519 302 22 0 chr11 51486604 51486743 -70357113 - B1F2 SINE Alu -1 148 7 1 977 267 272 50 71 chr11 51486765 51486864 -70356992 - ID_B1 SINE B4 -2 222 126 1 977 281 232 0 59 chr11 51487251 51487352 -70356504 + C-rich Low_complexity Low_complexity 4 98 0 1 977 493 319 22 78 chr11 51487353 51487533 -70356323 - ID_B1 SINE B4 -31 193 24 1 977 217 282 11 133 chr11 51487475 51487565 -70356291 - ID4_ SINE ID -2 81 3 1 977 265 283 120 0 chr11 51487603 51487695 -70356161 - PB1D10 SINE Alu -5 112 10 1 977 552 235 17 8 chr11 51487988 51488097 -70355759 - B3 SINE B2 0 216 107 1 977 532 214 54 0 chr11 51488097 51488209 -70355647 + B3 SINE B2 1 118 -98 1 977 2162 130 40 54 chr11 51488212 51488660 -70355196 + RMER10A LTR ERVL 1 442 0 1 977 312 83 0 0 chr11 51488708 51488756 -70355100 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 977 446 270 27 0 chr11 51488779 51488890 -70354966 + PB1D10 SINE Alu 3 116 -1 1 977 1132 75 0 0 chr11 51488900 51489047 -70354809 + B1_Mm SINE Alu 1 147 0 1 977 626 216 18 162 chr11 51489104 51489271 -70354585 - B3A SINE B2 0 198 53 1 977 748 322 38 11 chr11 51489277 51489541 -70354315 - MTE-int LTR MaLR -422 1158 888 1 977 377 86 17 0 chr11 51489550 51489608 -70354248 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 977 290 156 0 15 chr11 51489622 51489687 -70354169 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 1 977 358 233 0 26 chr11 51489687 51489779 -70354077 - B1_Mur4 SINE Alu -56 93 6 1 977 1420 283 85 22 chr11 51489784 51490323 -70353533 - MTE-int LTR MaLR -681 899 327 1 977 682 260 36 70 chr11 51490355 51490657 -70353199 - B4A SINE B4 0 292 1 1 977 522 0 0 0 chr11 51490678 51490736 -70353120 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1 977 955 131 0 14 chr11 51490736 51490873 -70352983 - B1_Mur4 SINE Alu -13 137 2 1 977 284 64 0 21 chr11 51490921 51490969 -70352887 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 977 1086 28 35 7 chr11 51490970 51491112 -70352744 - B1_Mm SINE Alu 0 147 2 1 977 433 293 69 25 chr11 51491113 51491372 -70352484 - MTEb LTR MaLR -2 377 89 1 977 537 16 0 0 chr11 51491415 51491477 -70352379 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 977 1297 189 116 62 chr11 51491499 51491854 -70352002 + ORR1D1 LTR MaLR 1 374 0 1 977 274 221 122 31 chr11 51492017 51492115 -70351741 + RLTR25B LTR ERVK 403 509 -519 1 977 798 55 0 9 chr11 51492049 51492147 -70351709 + B1_Mus1 SINE Alu 40 137 -11 1 977 243 0 0 0 chr11 51492147 51492174 -70351682 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 977 798 55 0 9 chr11 51492174 51492185 -70351671 + B1_Mus1 SINE Alu 138 148 0 1 977 456 229 19 19 chr11 51492226 51492333 -70351523 - B1_Mur2 SINE Alu 0 149 43 1 977 335 200 28 12 chr11 51492530 51492628 -70351228 - MTEa LTR MaLR -6 373 268 1 977 1079 68 0 52 chr11 51492819 51492974 -70350882 + B1_Mm SINE Alu 1 147 0 1 977 198 0 0 0 chr11 51492974 51492996 -70350860 + (A)n Simple_repeat Simple_repeat 1 22 0 1 977 430 299 67 0 chr11 51492998 51493132 -70350724 + RSINE1 SINE B4 3 145 -20 1 977 611 230 72 0 chr11 51493131 51493283 -70350573 + B3 SINE B2 49 211 -5 1 977 245 259 81 12 chr11 51493367 51493379 -70350477 + ID SINE ID 69 86 -138 1 977 218 270 89 11 chr11 51493379 51493469 -70350387 + PB1D10 SINE Alu 1 97 -20 1 977 615 220 116 35 chr11 51493982 51494180 -70349676 - ID_B1 SINE B4 -9 215 2 1 977 311 241 62 94 chr11 51494180 51494308 -70349548 + Tigger7 DNA MER2_type 2329 2452 -39 1 977 452 274 10 0 chr11 51494391 51494493 -70349363 + RSINE1 SINE B4 9 111 -54 1 977 1101 28 35 0 chr11 51494544 51494685 -70349171 + B1_Mus2 SINE Alu 2 147 0 1 977 185 0 40 0 chr11 51494690 51494715 -70349141 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 1 977 253 259 0 14 chr11 51494898 51494975 -70348881 - ID4 SINE ID -60 92 17 1 977 639 0 0 0 chr11 51495816 51495887 -70347969 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 977 889 18 9 0 chr11 51495912 51496026 -70347830 - B1_Mm SINE Alu 0 147 33 1 977 319 179 75 112 chr11 51495954 51496061 -70347795 - RLTR25B LTR ERVK -519 509 407 1 977 773 129 32 0 chr11 51496221 51496345 -70347511 - B1_Mur4 SINE Alu -20 130 3 1 977 887 196 57 0 chr11 51496403 51496597 -70347259 + B3 SINE B2 2 206 -10 1 977 234 0 0 0 chr11 51496679 51496705 -70347151 + (T)n Simple_repeat Simple_repeat 1 26 0 1 977 1550 31 0 20 chr11 51496928 51497123 -70346733 + B2_Mm1a SINE B2 2 192 -1 1 977 916 21 11 199 chr11 51497137 51497318 -70346538 + B1_Mm SINE Alu 1 147 0 1 977 279 246 0 68 chr11 51497425 51497499 -70346357 - ID4_ SINE ID 0 83 15 1 977 726 137 65 0 chr11 51497523 51497662 -70346194 - B1_Mur3 SINE Alu -1 148 1 1 977 606 205 30 30 chr11 51497697 51497828 -70346028 - B1_Mur3 SINE Alu -5 144 14 1 977 282 290 40 80 chr11 51497828 51497847 -70346009 - ID_B1 SINE B4 -5 219 76 1 977 860 239 16 16 chr11 51497853 51498040 -70345816 - B3 SINE B2 -28 188 2 1 977 243 146 0 0 chr11 51498042 51498083 -70345773 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 977 1203 91 43 11 chr11 51498093 51498281 -70345575 - B2_Mm2 SINE B2 0 195 2 1 977 698 215 35 0 chr11 51498281 51498425 -70345431 - B1_Mur1 SINE Alu 0 149 1 1 977 257 268 0 78 chr11 51498465 51498542 -70345314 - B1_Mm SINE Alu -11 136 66 1 977 287 160 307 0 chr11 51498587 51498662 -70345194 - B3A SINE B2 -97 101 4 1 977 468 243 137 11 chr11 51498703 51498886 -70344970 + B3 SINE B2 1 206 -10 1 977 524 211 36 9 chr11 51499645 51499755 -70344101 - PB1D7 SINE Alu -7 113 1 1 977 589 199 28 28 chr11 51500113 51500258 -70343598 + B1F SINE Alu 5 149 0 1 977 655 136 16 25 chr11 51500471 51500592 -70343264 + B1_Mur3 SINE Alu 30 149 0 2 977 245 255 220 13 chr11 51500594 51500753 -70343103 + L1M3 LINE L1 4150 4341 -1799 3 977 204 122 0 0 chr11 51500768 51500809 -70343047 + (A)n Simple_repeat Simple_repeat 1 41 0 4 977 249 222 0 0 chr11 51500896 51500941 -70342915 + B3 SINE B2 17 61 -155 5 977 237 326 22 0 chr11 51500998 51501087 -70342769 + Lx8 LINE L1 7203 7293 -180 6 977 579 223 14 7 chr11 51501107 51501247 -70342609 + B1F2 SINE Alu 9 149 0 7 977 22 0 0 0 chr11 51501351 51501373 -70342483 + AT_rich Low_complexity Low_complexity 1 22 0 8 977 385 259 93 42 chr11 51501649 51501842 -70342014 - ID_B1 SINE B4 -17 207 5 9 977 234 0 0 0 chr11 51503182 51503208 -70340648 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 977 326 259 39 2 chr11 51503651 51503744 -70340112 - B4A SINE B4 -8 284 189 1 977 214 178 67 0 chr11 51503714 51503759 -70340097 - PB1D9 SINE Alu -7 113 66 1 977 867 141 42 0 chr11 51503851 51503993 -70339863 + B1_Mus1 SINE Alu 1 148 0 1 977 1738 21 0 0 chr11 51504048 51504241 -70339615 + B2_Mm1a SINE B2 1 193 0 1 977 862 185 0 0 chr11 51504353 51504488 -70339368 + B1_Mur1 SINE Alu 2 136 -13 1 977 1202 96 25 60 chr11 51504494 51504694 -70339162 - B2_Mm2 SINE B2 -1 194 2 1 977 429 20 0 0 chr11 51504718 51504768 -70339088 + (GAGAA)n Simple_repeat Simple_repeat 4 53 0 1 977 366 273 98 8 chr11 51504822 51504944 -70338912 + B1F2 SINE Alu 2 134 -15 1 977 582 292 32 36 chr11 51505486 51505706 -70338150 + ID_B1 SINE B4 3 221 -3 1 977 27 62 0 0 chr11 51506655 51506703 -70337153 + AT_rich Low_complexity Low_complexity 1 48 0 2 977 365 204 216 26 chr11 51507026 51507142 -70336714 - B1F1 SINE Alu -2 147 10 2 977 21 0 0 0 chr11 51508119 51508140 -70335716 + GC_rich Low_complexity Low_complexity 1 21 0 2 977 683 245 0 164 chr11 51508871 51508922 -70334934 + B3 SINE B2 1 45 -171 2 977 1611 67 0 0 chr11 51508922 51509131 -70334725 - L1Md_T LINE L1 0 6582 6374 2 977 683 245 0 164 chr11 51509131 51509323 -70334533 + B3 SINE B2 46 204 -12 2 977 835 225 78 0 chr11 51509526 51509717 -70334139 - ID_B1 SINE B4 0 224 19 2 977 635 148 122 0 chr11 51509726 51509841 -70334015 + B1_Mur3 SINE Alu 19 147 -2 2 977 677 172 0 72 chr11 51509978 51510116 -70333740 + B1_Mur4 SINE Alu 23 150 0 2 977 611 205 51 0 chr11 51510707 51510824 -70333032 + RSINE1 SINE B4 3 125 -40 2 977 26 0 0 0 chr11 51510869 51510895 -70332961 + AT_rich Low_complexity Low_complexity 1 26 0 2 977 1596 32 16 0 chr11 51510900 51511086 -70332770 + B2_Mm1a SINE B2 1 189 -4 3 122 828 79 68 0 chr11 51511216 51511359 -70332497 + B2_Mm2 SINE B2 13 195 -21 3 978 504 72 0 0 chr11 51511556 51511625 -70332231 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 978 1114 56 0 0 chr11 51511627 51511769 -70332087 - B2_Mm2 SINE B2 -52 143 2 3 978 862 255 5 41 chr11 51511802 51512023 -70331833 + B3 SINE B2 2 214 -2 3 978 216 314 17 118 chr11 51512042 51512161 -70331695 - RSINE1 SINE B4 -3 162 56 3 978 296 248 0 10 chr11 51512159 51512258 -70331598 - PB1D9 SINE Alu -13 107 10 3 978 1490 178 27 77 chr11 51512282 51512648 -70331208 + ORR1B1 LTR MaLR 1 348 -46 3 978 528 279 16 0 chr11 51512667 51512796 -70331060 + B1F SINE Alu 13 143 -6 3 978 1152 49 14 0 chr11 51513000 51513143 -70330713 - B1_Mus2 SINE Alu 0 147 3 3 978 897 219 29 14 chr11 51513585 51513793 -70330063 + B3 SINE B2 1 211 -5 4 978 583 141 0 0 chr11 51513856 51513941 -70329915 + B1_Mur1 SINE Alu 37 121 -28 4 978 200 137 0 19 chr11 51513953 51514005 -70329851 + A-rich Low_complexity Low_complexity 2 52 0 4 978 344 303 0 8 chr11 51514017 51514140 -70329716 + PB1 SINE Alu 1 122 -5 4 978 379 244 99 50 chr11 51514849 51514970 -70328886 - B4A SINE B4 -140 152 26 4 978 547 281 7 0 chr11 51514986 51515125 -70328731 - ID_B1 SINE B4 -5 219 80 4 978 810 205 187 4 chr11 51515302 51515527 -70328329 - B4A SINE B4 -25 267 2 4 978 756 263 23 42 chr11 51515541 51515755 -70328101 - ID_B1 SINE B4 -6 218 9 4 978 1671 26 11 0 chr11 51515851 51516042 -70327814 - B2_Mm1t SINE B2 0 193 1 4 978 27 29 0 0 chr11 51516052 51516086 -70327770 + AT_rich Low_complexity Low_complexity 1 34 0 4 978 387 169 0 0 chr11 51516155 51516226 -70327630 + CT-rich Low_complexity Low_complexity 2 72 0 5 978 285 307 40 0 chr11 51516256 51516331 -70327525 - PB1 SINE Alu -37 90 13 5 978 624 199 177 0 chr11 51516391 51516532 -70327324 + MTD LTR MaLR 1 166 -253 5 978 1614 98 122 37 chr11 51516536 51516832 -70327024 + RLTR31_Mm LTR ERVK 4 324 -237 5 978 291 0 0 0 chr11 51516864 51516899 -70326957 - B2_Mm1a SINE B2 -32 161 127 5 978 1176 103 22 22 chr11 51516934 51517112 -70326744 - B2_Mm2 SINE B2 -16 179 2 5 978 448 259 116 19 chr11 51517114 51517330 -70326526 + RLTR31_Mm LTR ERVK 325 561 0 5 978 778 198 161 0 chr11 51517330 51517545 -70326311 + MTD LTR MaLR 162 411 -8 5 978 984 186 117 0 chr11 51518892 51519080 -70324776 + B3 SINE B2 1 210 -6 5 978 1129 57 0 7 chr11 51519122 51519264 -70324592 - B1_Mus2 SINE Alu -5 142 2 5 978 866 59 0 0 chr11 51519370 51519489 -70324367 + B1_Mus2 SINE Alu 29 147 0 5 978 189 74 0 0 chr11 51519491 51519518 -70324338 + (A)n Simple_repeat Simple_repeat 1 27 0 5 978 568 214 27 0 chr11 51519576 51519688 -70324168 + B1_Mur4 SINE Alu 36 150 0 6 978 1160 74 0 0 chr11 51519894 51520042 -70323814 - B1_Mus1 SINE Alu 0 148 1 6 978 424 241 117 29 chr11 51520895 51520915 -70322941 - RSINE1 SINE B4 -14 151 130 6 978 564 56 0 0 chr11 51520915 51520987 -70322869 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 978 424 241 117 29 chr11 51520987 51521103 -70322753 - RSINE1 SINE B4 -36 129 3 6 978 439 175 140 30 chr11 51521117 51521217 -70322639 - B1_Mur4 SINE Alu -5 145 35 6 978 906 190 188 10 chr11 51521314 51521607 -70322249 + RCHARR1 DNA MER1_type 545 889 -85 6 978 1079 200 19 0 chr11 51521762 51521972 -70321884 + B3 SINE B2 2 215 -1 6 978 392 275 92 21 chr11 51522081 51522222 -70321634 + L1MB7 LINE L1 5951 6101 -83 6 978 227 311 202 10 chr11 51522674 51522778 -70321078 - RSINE1 SINE B4 -41 124 1 6 978 1343 93 22 0 chr11 51522898 51523081 -70320775 - B2_Mm1a SINE B2 -6 187 1 6 978 333 296 20 0 chr11 51523160 51523258 -70320598 - PB1D10 SINE Alu -15 102 3 7 978 584 171 80 65 chr11 51523291 51523429 -70320427 + B1_Mur3 SINE Alu 2 141 -8 7 978 749 223 119 5 chr11 51523458 51523652 -70320204 - B3 SINE B2 0 216 1 7 978 246 128 0 0 chr11 51523652 51523691 -70320165 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 978 989 221 5 28 chr11 51523706 51523920 -70319936 - B3 SINE B2 -6 210 2 7 978 650 209 56 21 chr11 51523949 51524091 -70319765 - B1_Mur2 SINE Alu 0 149 3 7 978 2143 20 54 15 chr11 51524097 51524356 -70319500 - L1Md_F2 LINE L1 -2 6580 6312 7 978 383 224 10 10 chr11 51524564 51524663 -70319193 - MYSERV6-int LTR ERVK -7796 1163 1065 7 978 1844 189 25 35 chr11 51524690 51524851 -70319005 + MYSERV-int LTR ERVK 6148 6310 -240 7 978 1057 95 0 0 chr11 51524851 51524988 -70318868 + B1_Mus2 SINE Alu 1 137 -10 7 978 245 29 0 29 chr11 51524988 51525023 -70318833 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 978 1844 189 25 35 chr11 51525023 51525265 -70318591 + MYSERV-int LTR ERVK 6311 6547 -3 7 978 1014 173 40 5 chr11 51525269 51525467 -70318389 + RLTR11A2 LTR ERVK 3 207 -320 7 978 776 218 0 0 chr11 51525493 51525635 -70318221 + B1_Mur3 SINE Alu 1 142 -7 8 978 596 261 49 0 chr11 51526128 51526270 -70317586 - RSINE1 SINE B4 -10 155 7 8 978 284 205 35 35 chr11 51526377 51526463 -70317393 - L1MB5 LINE L1 -2 6172 6087 8 978 607 220 64 18 chr11 51526513 51526684 -70317172 - B3A SINE B2 -18 180 2 8 978 1437 64 16 5 chr11 51526741 51526930 -70316926 - B2_Mm2 SINE B2 -3 192 2 8 978 425 254 49 33 chr11 51527272 51527394 -70316462 - B3A SINE B2 -1 197 74 8 978 581 264 7 14 chr11 51527620 51527762 -70316094 + B1_Mur4 SINE Alu 10 150 0 8 978 289 145 48 0 chr11 51527776 51527838 -70316018 + B1_Mus2 SINE Alu 80 144 -3 8 978 507 279 50 0 chr11 51528056 51528196 -70315660 + RSINE1 SINE B4 15 161 -4 8 978 343 323 31 16 chr11 51528391 51528520 -70315336 + ID_B1 SINE B4 84 214 -10 9 978 279 0 0 0 chr11 51528520 51528551 -70315305 + (CAA)n Simple_repeat Simple_repeat 2 32 0 9 978 543 31 0 0 chr11 51528551 51528615 -70315241 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 9 978 1684 16 0 11 chr11 51528861 51529052 -70314804 - B2_Mm1t SINE B2 -4 189 1 9 978 901 153 0 27 chr11 51529498 51529646 -70314210 - B1_Mur3 SINE Alu -1 148 5 9 978 23 54 0 0 chr11 51530186 51530223 -70313633 + AT_rich Low_complexity Low_complexity 1 37 0 9 978 1446 54 21 11 chr11 51531329 51531517 -70312339 - B2_Mm2 SINE B2 -5 190 1 9 978 22 35 0 0 chr11 51531521 51531550 -70312306 + AT_rich Low_complexity Low_complexity 1 29 0 9 978 254 185 0 36 chr11 51531571 51531627 -70312229 - B2_Mm2 SINE B2 -95 100 47 9 978 1256 113 11 0 chr11 51531674 51531851 -70312005 - B2_Mm1t SINE B2 -14 179 1 9 978 880 43 0 0 chr11 51531917 51532033 -70311823 - B1_Mus1 SINE Alu -5 143 28 1 978 519 229 0 35 chr11 51532024 51532137 -70311719 - B1_Mur1 SINE Alu -39 110 2 1 978 702 227 23 52 chr11 51532172 51532344 -70311512 + B3 SINE B2 1 167 -49 1 978 709 276 131 49 chr11 51532582 51532849 -70311007 - B4 SINE B4 -3 289 1 1 978 435 260 48 0 chr11 51532857 51532961 -70310895 - PB1D10 SINE Alu -8 109 1 1 978 470 287 57 51 chr11 51533219 51533377 -70310479 + B3A SINE B2 4 162 -36 1 978 216 0 0 0 chr11 51533394 51533418 -70310438 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 978 998 104 147 0 chr11 51533433 51533596 -70310260 + B2_Mm2 SINE B2 1 187 -8 1 978 247 350 12 0 chr11 51533693 51533773 -70310083 - ID4_ SINE ID 0 83 3 1 978 324 202 101 0 chr11 51533887 51533966 -70309890 - ID_B1 SINE B4 -11 213 127 1 978 434 192 61 84 chr11 51534017 51534148 -70309708 - B1F1 SINE Alu -13 136 9 1 978 365 244 120 115 chr11 51534148 51534225 -70309631 - ID_B1 SINE B4 -13 211 3 1 978 344 222 0 14 chr11 51534465 51534538 -70309318 - B1_Mur4 SINE Alu -77 73 2 1 978 305 229 0 54 chr11 51534473 51534547 -70309309 - B4A SINE B4 -142 150 81 1 978 378 250 60 8 chr11 51534575 51534708 -70309148 - B1F2 SINE Alu 0 149 10 1 978 223 248 4 24 chr11 51535109 51535186 -70308670 + PB1D10 SINE Alu 65 149 0 1 978 297 0 0 0 chr11 51535472 51535505 -70308351 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 978 369 0 0 0 chr11 51535505 51535545 -70308311 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 978 355 289 0 0 chr11 51535814 51535897 -70307959 + ID4_ SINE ID 1 83 0 1 978 1209 177 29 0 chr11 51535946 51536155 -70307701 + B3 SINE B2 2 216 0 1 978 274 139 0 0 chr11 51536583 51536626 -70307230 - B1_Mus2 SINE Alu -104 43 1 1 978 223 186 0 0 chr11 51536639 51536682 -70307174 + A-rich Low_complexity Low_complexity 1 43 0 1 978 688 173 8 8 chr11 51536888 51537016 -70306840 + B1_Mus1 SINE Alu 20 147 -1 1 978 680 236 117 6 chr11 51537558 51537737 -70306119 - B3 SINE B2 -14 202 4 1 978 1056 68 0 52 chr11 51537895 51538049 -70305807 - B1_Mus2 SINE Alu 0 147 2 1 978 195 186 0 0 chr11 51538196 51538239 -70305617 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 1 978 791 252 29 10 chr11 51538245 51538449 -70305407 + B4 SINE B4 26 233 -59 1 978 639 187 36 29 chr11 51538446 51538584 -70305272 + B1_Mur2 SINE Alu 6 144 -5 1 978 198 0 0 0 chr11 51538655 51538677 -70305179 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 978 244 245 0 0 chr11 51538712 51538761 -70305095 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 978 811 241 37 21 chr11 51538895 51539086 -70304770 - B3 SINE B2 0 216 23 1 978 918 161 199 6 chr11 51539109 51539290 -70304566 - B3 SINE B2 0 216 1 1 978 396 219 124 0 chr11 51539330 51539435 -70304421 - ID_B1 SINE B4 -2 222 105 1 978 255 256 65 26 chr11 51539584 51539716 -70304140 - B4 SINE B4 -1 164 26 1 978 380 272 14 56 chr11 51540681 51540825 -70303031 + B1F SINE Alu 11 148 -1 1 978 556 268 42 7 chr11 51540825 51540968 -70302888 + RSINE1 SINE B4 3 150 -15 1 978 315 71 0 0 chr11 51540979 51541021 -70302835 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 978 311 236 152 61 chr11 51541259 51541358 -70302498 - ID_B1 SINE B4 -7 217 110 1 978 1243 28 7 0 chr11 51541594 51541739 -70302117 + B1_Mm SINE Alu 2 147 0 1 978 22 0 0 0 chr11 51541739 51541761 -70302095 + AT_rich Low_complexity Low_complexity 1 22 0 1 978 553 297 62 6 chr11 51541763 51541939 -70301917 + ID_B1 SINE B4 3 188 -36 1 978 1256 48 0 0 chr11 51541989 51542135 -70301721 - B1_Mus2 SINE Alu 0 147 2 1 978 21 0 0 0 chr11 51542344 51542365 -70301491 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 322 216 81 0 chr11 51542413 51542487 -70301369 - PB1D9 SINE Alu -4 116 37 1 978 396 103 0 0 chr11 51542487 51542545 -70301311 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1 978 258 171 35 274 chr11 51542545 51542559 -70301297 - B1_Mus1 SINE Alu -105 43 40 1 978 1491 58 0 21 chr11 51542559 51542753 -70301103 - B2_Mm2 SINE B2 -5 190 1 1 978 627 86 19 9 chr11 51542763 51542869 -70300987 - L1_Mus3 LINE L1 -7 6631 6525 1 978 258 171 35 274 chr11 51542869 51542899 -70300957 - B1_Mus1 SINE Alu -109 39 12 1 978 261 323 21 0 chr11 51543167 51543260 -70300596 + PB1D7 SINE Alu 5 99 -21 1 978 284 244 73 0 chr11 51543401 51543483 -70300373 - PB1 SINE Alu -2 125 38 1 978 587 184 144 0 chr11 51543556 51543681 -70300175 + B1_Mur4 SINE Alu 1 143 -7 1 978 253 303 0 26 chr11 51543728 51543806 -70300050 + RSINE1 SINE B4 3 78 -87 1 978 222 255 39 0 chr11 51543985 51544036 -70299820 + RSINE1 SINE B4 84 136 -29 1 978 1252 141 10 0 chr11 51544092 51544284 -70299572 + B2_Mm2 SINE B2 2 195 0 1 978 555 284 0 26 chr11 51544333 51544485 -70299371 + B1F SINE Alu 1 148 -1 1 978 226 339 0 0 chr11 51544513 51544578 -70299278 + ID4_ SINE ID 14 78 -5 1 978 258 32 0 0 chr11 51544701 51544732 -70299124 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1 978 779 138 6 76 chr11 51545125 51545282 -70298574 + B1_Mm SINE Alu 2 147 0 1 978 25 31 0 0 chr11 51545524 51545556 -70298300 + AT_rich Low_complexity Low_complexity 1 32 0 1 978 225 121 179 15 chr11 51545720 51545787 -70298069 + PB1D9 SINE Alu 42 119 -1 1 978 445 246 42 42 chr11 51545919 51546038 -70297818 - PB1 SINE Alu -3 124 6 1 978 856 122 43 7 chr11 51546217 51546357 -70297499 + B1_Mur4 SINE Alu 5 149 -1 1 978 22 70 0 0 chr11 51547655 51547698 -70296158 + AT_rich Low_complexity Low_complexity 1 43 0 1 978 409 275 33 98 chr11 51548286 51548439 -70295417 + B4A SINE B4 78 220 -72 1 978 892 118 15 0 chr11 51548308 51548444 -70295412 + B1_Mur2 SINE Alu 12 149 0 1 978 539 236 138 19 chr11 51548470 51548630 -70295226 + B3A SINE B2 4 182 -16 1 978 420 20 0 0 chr11 51548749 51548798 -70295058 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 978 548 194 56 0 chr11 51548830 51548938 -70294918 + ID_B1 SINE B4 108 221 -3 1 978 347 263 39 11 chr11 51548948 51549067 -70294789 + L1M2 LINE L1 5480 5594 -577 1 978 471 280 38 0 chr11 51549070 51549202 -70294654 + B3 SINE B2 50 186 -30 1 978 234 241 36 0 chr11 51549260 51549343 -70294513 + ID4 SINE ID 35 120 -32 1 978 1162 75 12 0 chr11 51549350 51549511 -70294345 + B2_Mm2 SINE B2 3 165 -30 1 978 307 309 0 20 chr11 51550251 51550350 -70293506 + PB1D7 SINE Alu 20 116 -4 1 978 23 92 0 0 chr11 51550448 51550513 -70293343 + AT_rich Low_complexity Low_complexity 1 65 0 1 978 360 274 21 10 chr11 51550515 51550611 -70293245 - B1F1 SINE Alu -47 102 6 1 978 1078 80 0 0 chr11 51550727 51550864 -70292992 + B1_Mus1 SINE Alu 2 138 -10 1 978 600 111 0 0 chr11 51550867 51550957 -70292899 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 978 600 243 29 34 chr11 51551099 51551274 -70292582 + B3 SINE B2 42 215 -1 1 978 1688 21 11 0 chr11 51551442 51551633 -70292223 - B2_Mm1a SINE B2 0 193 1 1 978 632 253 57 16 chr11 51551659 51551852 -70292004 - B3 SINE B2 -11 205 5 1 978 234 91 0 0 chr11 51551859 51551892 -70291964 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 1 978 299 244 186 72 chr11 51551892 51552078 -70291778 - ID_B1 SINE B4 -13 211 3 1 978 262 257 157 0 chr11 51552090 51552160 -70291696 - PB1D10 SINE Alu -6 111 31 1 978 737 220 78 10 chr11 51552179 51552372 -70291484 - B3 SINE B2 0 216 11 1 978 1069 117 0 0 chr11 51552907 51553052 -70290804 + B1_Mus1 SINE Alu 4 148 0 1 978 344 192 0 64 chr11 51553206 51553284 -70290572 - B1_Mur4 SINE Alu -65 85 13 1 978 1332 68 0 22 chr11 51553285 51553464 -70290392 + B2_Mm2 SINE B2 3 177 -18 1 978 545 294 15 49 chr11 51553751 51553955 -70289901 - B3A SINE B2 0 198 2 1 978 334 221 0 0 chr11 51553980 51554048 -70289808 + RSINE1 SINE B4 3 70 -95 1 978 389 256 118 52 chr11 51554064 51554200 -70289656 - B1_Mur1 SINE Alu -3 146 2 1 978 223 343 0 29 chr11 51554241 51554310 -70289546 - RSINE1 SINE B4 -93 72 6 1 978 460 266 18 0 chr11 51554336 51554445 -70289411 - PB1D7 SINE Alu -9 111 1 1 978 307 206 82 0 chr11 51554608 51554681 -70289175 - B1F2 SINE Alu -65 84 6 1 978 663 189 0 0 chr11 51554850 51554961 -70288895 - B1_Mur1 SINE Alu -7 142 32 1 978 343 265 65 75 chr11 51555097 51555297 -70288559 - B3A SINE B2 0 198 1 1 978 254 355 9 27 chr11 51555400 51555510 -70288346 - PB1D10 SINE Alu -5 112 5 1 978 286 227 112 38 chr11 51555621 51555781 -70288075 - B3A SINE B2 -5 190 19 1 978 314 305 60 72 chr11 51555882 51556048 -70287808 - RSINE1 SINE B4 0 165 2 1 978 315 266 96 0 chr11 51556285 51556379 -70287477 + ID_B1 SINE B4 84 186 -38 1 978 264 311 70 56 chr11 51556379 51556428 -70287428 + B1_Mus2 SINE Alu 3 147 0 1 978 366 226 32 11 chr11 51556723 51556817 -70287039 + PB1 SINE Alu 21 116 -11 1 978 700 196 20 0 chr11 51557564 51557717 -70286139 + URR1B DNA MER1_type 8 163 -62 1 978 703 159 8 23 chr11 51557745 51557874 -70285982 + B1_Mur3 SINE Alu 23 149 0 2 978 633 184 119 14 chr11 51558126 51558269 -70285587 + ORR1C2 LTR MaLR 227 384 0 2 978 2817 223 161 51 chr11 51558269 51558619 -70285237 + ORR1C2-int LTR MaLR 1 436 -934 2 978 2441 43 7 16 chr11 51558619 51558926 -70284930 + L1Md_A LINE L1 6279 6582 0 2 978 2817 223 161 51 chr11 51558926 51559586 -70284270 + ORR1C2-int LTR MaLR 437 1122 -248 2 978 2979 143 32 4 chr11 51559583 51560087 -70283769 + RLTR12B LTR ERVK 11 528 0 2 978 606 114 186 8 chr11 51560089 51560213 -70283643 + ORR1C2-int LTR MaLR 1259 1404 -105 2 978 513 163 22 0 chr11 51560226 51560318 -70283538 - PB1D9 SINE Alu -13 107 14 2 978 532 159 62 0 chr11 51560323 51560436 -70283420 + ORR1C2-int LTR MaLR 1390 1509 0 2 978 2121 138 51 35 chr11 51560436 51560810 -70283046 + ORR1C2 LTR MaLR 1 380 -4 2 978 281 266 83 41 chr11 51560810 51560955 -70282901 + L1MB7 LINE L1 5720 5870 -308 2 978 295 229 179 65 chr11 51561062 51561230 -70282626 + L1MB7 LINE L1 5878 6064 -120 2 978 219 179 0 25 chr11 51561238 51561278 -70282578 + RSINE1 SINE B4 11 49 -116 2 978 453 19 0 0 chr11 51561370 51561424 -70282432 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2 978 759 52 0 0 chr11 51561425 51561521 -70282335 + (GAGAA)n Simple_repeat Simple_repeat 3 98 0 2 978 1376 88 0 35 chr11 51561521 51561721 -70282135 + B2_Mm2 SINE B2 2 194 -1 2 978 426 255 35 43 chr11 51561766 51561881 -70281975 + PB1D9 SINE Alu 2 115 -5 2 978 1146 58 0 0 chr11 51561939 51562076 -70281780 + B1_Mus2 SINE Alu 2 138 -9 2 978 189 0 0 0 chr11 51562076 51562097 -70281759 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 2 978 442 262 202 17 chr11 51562220 51562457 -70281399 + MER21B LTR ERV1 437 717 -146 2 978 365 278 63 89 chr11 51562843 51562860 -70280996 + B4 SINE B4 70 219 -69 2 978 709 219 22 0 chr11 51562860 51562997 -70280859 + B1_Mur2 SINE Alu 3 142 -7 2 978 691 218 101 53 chr11 51563046 51563235 -70280621 - B3A SINE B2 0 198 1 2 978 1433 32 0 21 chr11 51563263 51563453 -70280403 - B2_Mm1a SINE B2 0 193 8 2 978 704 83 0 0 chr11 51563448 51563544 -70280312 - B1_Mus2 SINE Alu -51 96 1 2 978 372 293 8 54 chr11 51563544 51563673 -70280183 - B1F2 SINE Alu -10 139 17 2 978 486 218 18 9 chr11 51563746 51563857 -70279999 + ID_B1 SINE B4 109 220 -4 2 978 1718 26 0 0 chr11 51563859 51564051 -70279805 + B2_Mm1a SINE B2 2 193 0 2 978 263 0 0 27 chr11 51564150 51564187 -70279669 + B1_Mm SINE Alu 100 135 -12 2 978 556 171 19 0 chr11 51564179 51564284 -70279572 + B3A SINE B2 38 144 -54 2 978 264 91 0 0 chr11 51564294 51564338 -70279518 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 978 224 264 0 0 chr11 51564512 51564565 -70279291 + BC1_Mm scRNA scRNA 4 56 -96 2 978 399 145 0 0 chr11 51564668 51564737 -70279119 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 978 1151 45 239 0 chr11 51565131 51565286 -70278570 - B2_Mm1a SINE B2 -1 192 1 2 978 667 230 1 50 chr11 51565484 51565677 -70278179 + B3A SINE B2 20 203 -13 2 978 702 217 0 0 chr11 51565677 51565838 -70278018 + (TA)n Simple_repeat Simple_repeat 2 162 0 2 978 660 249 33 28 chr11 51565897 51566079 -70277777 + B3A SINE B2 2 184 -14 2 978 921 226 15 35 chr11 51566237 51566439 -70277417 - B3 SINE B2 -18 198 1 2 978 486 108 52 31 chr11 51567044 51567140 -70276716 + B1_Mur3 SINE Alu 52 149 0 2 978 326 291 0 76 chr11 51567330 51567352 -70276504 + ID_B1 SINE B4 80 213 -11 2 978 539 208 16 24 chr11 51567352 51567475 -70276381 + B1_Mur1 SINE Alu 17 138 -11 2 978 342 0 0 0 chr11 51567479 51567517 -70276339 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 978 494 213 27 18 chr11 51567553 51567663 -70276193 + PB1D9 SINE Alu 10 120 0 2 978 861 117 79 21 chr11 51567693 51567833 -70276023 + B1_Mus1 SINE Alu 1 148 0 2 978 207 0 0 0 chr11 51567915 51567938 -70275918 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2 978 303 277 12 0 chr11 51568195 51568278 -70275578 + PB1D7 SINE Alu 23 106 -14 2 978 216 0 0 0 chr11 51568278 51568302 -70275554 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2 978 1124 82 0 0 chr11 51570748 51570895 -70272961 + B1_Mus2 SINE Alu 1 147 0 2 978 369 295 11 0 chr11 51570941 51571036 -70272820 + PB1D10 SINE Alu 10 105 -12 2 978 1144 95 0 0 chr11 51571673 51571820 -70272036 + B1_Mus1 SINE Alu 2 148 0 2 978 207 100 0 0 chr11 51571822 51571852 -70272004 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2 978 604 217 42 36 chr11 51571857 51572024 -70271832 - B3 SINE B2 -48 168 1 2 978 737 138 138 0 chr11 51572091 51572221 -70271635 - B1_Mur3 SINE Alu -1 148 1 2 978 1475 64 11 0 chr11 51572265 51572453 -70271403 + B2_Mm1a SINE B2 2 191 -2 2 978 1330 77 66 0 chr11 51572522 51572704 -70271152 + B2_Mm2 SINE B2 1 194 -1 2 978 273 233 0 85 chr11 51573149 51573243 -70270613 + MT2B LTR ERVL 155 240 -361 2 978 636 189 52 15 chr11 51573169 51573303 -70270553 + B1_Mur2 SINE Alu 11 149 0 2 978 1226 140 76 19 chr11 51573821 51574032 -70269824 - URR1B DNA MER1_type 0 225 3 2 978 1995 138 118 24 chr11 51574104 51574519 -70269337 + RMER4A LTR ERVK 12 465 -1 2 978 1209 55 0 0 chr11 51574609 51574755 -70269101 - B1_Mus2 SINE Alu 0 147 2 2 978 858 175 28 0 chr11 51575030 51575173 -70268683 - B1_Mus2 SINE Alu 0 147 1 2 978 221 234 0 0 chr11 51575222 51575286 -70268570 + T-rich Low_complexity Low_complexity 4 67 0 2 978 824 124 1 1 chr11 51575293 51575440 -70268416 - B1_Mus1 SINE Alu 0 148 1 2 978 433 262 24 32 chr11 51575517 51575643 -70268213 - ID_B1 SINE B4 -9 215 91 2 978 1389 61 0 0 chr11 51575775 51575955 -70267901 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 978 1011 128 0 0 chr11 51575955 51576096 -70267760 - B1_Mus1 SINE Alu -7 141 1 2 978 339 283 20 29 chr11 51576240 51576342 -70267514 - RSINE1 SINE B4 -28 137 37 2 978 261 275 0 59 chr11 51576398 51576483 -70267373 - ID4_ SINE ID -1 82 3 2 978 283 330 9 9 chr11 51576697 51576804 -70267052 + PB1D10 SINE Alu 1 107 -10 2 978 507 120 198 27 chr11 51576888 51576999 -70266857 + B1_Mur4 SINE Alu 1 130 -20 2 978 342 276 13 0 chr11 51578771 51578847 -70265009 - RSINE1 SINE B4 -85 80 4 2 978 305 252 45 9 chr11 51578938 51579033 -70264823 - PB1D10 SINE Alu -20 129 33 2 978 214 262 0 0 chr11 51579033 51579075 -70264781 + polypyrimidine Low_complexity Low_complexity 2 43 0 2 978 1019 114 113 6 chr11 51579235 51579403 -70264453 + B2_Mm2 SINE B2 2 187 -8 2 978 234 241 90 27 chr11 51579531 51579642 -70264214 + PB1D9 SINE Alu 1 118 -2 2 978 345 235 29 39 chr11 51579663 51579765 -70264091 - PB1D10 SINE Alu -16 101 1 2 978 515 188 149 27 chr11 51579765 51579825 -70264031 - ID SINE ID -144 80 3 2 978 980 204 46 0 chr11 51580023 51580219 -70263637 - B3 SINE B2 -11 205 1 2 978 241 174 43 0 chr11 51580291 51580337 -70263519 - ID_B1 SINE B4 -9 215 168 2 978 240 277 152 10 chr11 51580337 51580380 -70263476 - PB1D7 SINE Alu -2 104 6 2 978 754 207 14 7 chr11 51580380 51580526 -70263330 + B1_Mur1 SINE Alu 3 149 0 2 978 246 234 115 13 chr11 51580532 51580610 -70263246 - B1F1 SINE Alu -52 97 12 2 978 356 268 218 8 chr11 51580716 51580840 -70263016 + RSINE1 SINE B4 1 150 -15 2 978 360 0 0 0 chr11 51580845 51580885 -70262971 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 978 762 224 86 8 chr11 51581111 51581345 -70262511 - L1MB7 LINE L1 -7 6177 5926 2 978 912 129 7 7 chr11 51582522 51582662 -70261194 + B1_Mus1 SINE Alu 2 141 -7 2 978 316 284 38 38 chr11 51582836 51582942 -70260914 - PB1D10 SINE Alu -7 110 5 2 978 633 145 32 8 chr11 51583053 51583178 -70260678 - B1_Mur2 SINE Alu -21 128 1 2 978 295 216 8 128 chr11 51583077 51583194 -70260662 - MT2B LTR ERVL -345 256 154 2 978 279 276 102 11 chr11 51583285 51583373 -70260483 - PB1D10 SINE Alu -17 100 5 2 978 333 0 0 0 chr11 51583383 51583420 -70260436 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 2 978 1309 62 48 48 chr11 51583431 51583576 -70260280 + B2_Mm2 SINE B2 1 145 -50 2 978 1450 84 0 5 chr11 51583576 51583767 -70260089 + B2_Mm2 SINE B2 2 191 -4 2 978 1309 62 48 48 chr11 51583767 51583808 -70260048 + B2_Mm2 SINE B2 146 187 -8 2 978 934 182 82 10 chr11 51583835 51584029 -70259827 - B3 SINE B2 -6 210 3 2 978 334 303 75 99 chr11 51584168 51584450 -70259406 - B4A SINE B4 -13 279 5 2 978 331 265 38 20 chr11 51585576 51585713 -70258143 - B1F SINE Alu 0 149 14 2 978 1043 148 11 193 chr11 51585722 51585991 -70257865 + RMER19B LTR ERVK 2 221 -681 2 978 380 281 202 0 chr11 51586062 51586176 -70257680 - ID_B1 SINE B4 -2 222 86 2 978 378 192 13 0 chr11 51586177 51586255 -70257601 - B1F SINE Alu -29 120 42 2 978 898 204 97 0 chr11 51586265 51586461 -70257395 - B3 SINE B2 0 216 2 2 978 1960 99 53 0 chr11 51586512 51586815 -70257041 + ORR1A3 LTR MaLR 1 319 -7 2 978 260 259 0 0 chr11 51586898 51586956 -70256900 - ID4_ SINE ID 0 83 26 2 978 358 254 83 17 chr11 51587034 51587154 -70256702 - B1F SINE Alu -7 142 15 2 978 638 221 14 28 chr11 51587266 51587410 -70256446 + B1_Mur4 SINE Alu 7 148 -2 2 978 237 250 82 14 chr11 51587516 51587589 -70256267 + B1F1 SINE Alu 27 104 -45 2 978 466 73 44 0 chr11 51587627 51587695 -70256161 - RMER6B LTR ERVK -3 458 388 2 978 1197 126 55 59 chr11 51587767 51587820 -70256036 - RMER6B LTR ERVK -195 266 211 2 978 309 26 0 0 chr11 51587820 51587858 -70255998 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 978 1197 126 55 59 chr11 51587858 51588058 -70255798 - RMER6B LTR ERVK -251 210 15 2 978 257 222 42 0 chr11 51588060 51588132 -70255724 + ID2 SINE ID 4 78 -5 3 978 251 312 97 0 chr11 51588655 51588748 -70255108 + ID_B1 SINE B4 88 189 -35 3 978 238 320 19 28 chr11 51588748 51588761 -70255095 + PB1D10 SINE Alu 7 111 -6 3 978 201 74 0 0 chr11 51588813 51588840 -70255016 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 978 1354 64 16 0 chr11 51588874 51589061 -70254795 - B2_Mm2 SINE B2 -4 191 2 3 978 201 74 0 0 chr11 51589065 51589092 -70254764 + (T)n Simple_repeat Simple_repeat 1 27 0 3 978 365 333 191 0 chr11 51589103 51589229 -70254627 - RSINE1 SINE B4 -13 152 3 3 978 450 250 33 59 chr11 51589402 51589555 -70254301 - B1F1 SINE Alu 0 149 1 3 978 339 236 179 0 chr11 51589567 51589673 -70254183 - B1_Mur1 SINE Alu -23 126 2 3 978 404 230 10 39 chr11 51589693 51589797 -70254059 - ID_B1 SINE B4 0 224 124 3 978 454 182 18 0 chr11 51589965 51590075 -70253781 + GA-rich Low_complexity Low_complexity 1 112 0 3 978 608 208 76 0 chr11 51590076 51590220 -70253636 - B3A SINE B2 -43 155 1 3 978 428 287 0 57 chr11 51590223 51590345 -70253511 - PB1D10 SINE Alu -2 115 1 3 978 493 217 80 0 chr11 51590406 51590544 -70253312 - B1_Mur2 SINE Alu 0 149 1 3 978 578 273 71 0 chr11 51590713 51590867 -70252989 - RSINE1 SINE B4 0 165 1 3 978 227 279 15 0 chr11 51591506 51591574 -70252282 - MurSatRep1 Unknown Unknown -1863 274 206 3 978 225 176 49 171 chr11 51591617 51591699 -70252157 - ID4 SINE ID -10 73 2 3 978 298 291 11 11 chr11 51591734 51591821 -70252035 - PB1D10 SINE Alu -30 87 1 3 978 286 233 43 65 chr11 51591821 51591897 -70251959 - PB1D10 SINE Alu -41 76 3 3 978 688 199 117 73 chr11 51591940 51592146 -70251710 + B3 SINE B2 2 216 0 3 978 330 315 19 88 chr11 51592159 51592319 -70251537 + B1F1 SINE Alu 1 149 0 3 978 951 137 194 28 chr11 51592524 51592704 -70251152 - B3 SINE B2 -6 210 1 3 978 384 195 310 0 chr11 51592717 51592830 -70251026 - B1_Mur2 SINE Alu 0 149 2 3 978 585 240 8 0 chr11 51592837 51592962 -70250894 - ID_B1 SINE B4 0 224 99 3 978 566 229 25 0 chr11 51593662 51593784 -70250072 + B1_Mur1 SINE Alu 7 131 -18 3 978 257 250 0 68 chr11 51593776 51593849 -70250007 + RSINE1 SINE B4 98 165 0 3 978 24 0 0 0 chr11 51593849 51593873 -70249983 + AT_rich Low_complexity Low_complexity 1 24 0 3 978 1100 88 0 13 chr11 51593992 51594141 -70249715 - B1_Mus2 SINE Alu 0 147 1 3 978 300 302 36 36 chr11 51594857 51594967 -70248889 - PB1D10 SINE Alu -7 110 1 3 978 327 252 410 0 chr11 51595658 51595811 -70248045 + ID_B1 SINE B4 2 217 -7 3 978 222 37 0 0 chr11 51596008 51596035 -70247821 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 978 473 275 67 0 chr11 51596109 51596229 -70247627 - ID_B1 SINE B4 -13 211 84 3 978 626 214 93 12 chr11 51596642 51596803 -70247053 - B2_Mm2 SINE B2 -19 176 3 3 978 207 0 0 0 chr11 51597244 51597267 -70246589 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 978 378 312 45 7 chr11 51597388 51597543 -70246313 + RSINE1 SINE B4 3 163 -2 3 978 505 194 333 6 chr11 51597705 51597833 -70246023 + B3 SINE B2 3 181 -35 3 978 366 23 0 0 chr11 51597833 51597876 -70245980 + (CATA)n Simple_repeat Simple_repeat 4 46 0 3 978 505 194 333 6 chr11 51597876 51597903 -70245953 + B3 SINE B2 182 208 -8 3 978 21 36 0 0 chr11 51597903 51597931 -70245925 + AT_rich Low_complexity Low_complexity 1 28 0 3 978 471 161 205 33 chr11 51597937 51598059 -70245797 + B1_Mur4 SINE Alu 7 149 -1 3 978 1277 20 0 0 chr11 51598088 51598235 -70245621 - B1_Mus2 SINE Alu 0 147 1 3 978 1692 254 47 121 chr11 51598272 51598699 -70245157 - RCHARR1 DNA MER1_type -101 873 497 3 978 1405 86 16 0 chr11 51598699 51598886 -70244970 - B2_Mm1t SINE B2 -2 191 2 3 978 1692 254 47 121 chr11 51598886 51599038 -70244818 - RCHARR1 DNA MER1_type -478 496 369 3 978 947 155 197 22 chr11 51599038 51599216 -70244640 - B3 SINE B2 -6 210 2 3 978 1692 254 47 121 chr11 51599216 51599523 -70244333 - RCHARR1 DNA MER1_type -606 368 51 3 978 918 173 80 20 chr11 51599540 51599741 -70244115 + B3 SINE B2 2 214 -2 3 978 907 257 24 0 chr11 51599856 51600066 -70243790 + B3 SINE B2 2 216 0 3 978 228 301 0 0 chr11 51600300 51600373 -70243483 + RSINE1 SINE B4 83 155 -10 3 978 320 219 0 0 chr11 51600398 51600471 -70243385 + L1MEc LINE L1 1524 1596 -4804 3 978 791 184 53 26 chr11 51600496 51600686 -70243170 - B3 SINE B2 -21 195 1 3 978 247 239 44 15 chr11 51600705 51600773 -70243083 + ORR1E LTR MaLR 10 79 -280 3 978 1597 43 0 11 chr11 51600802 51600991 -70242865 + B2_Mm1a SINE B2 1 187 -6 3 978 180 0 0 0 chr11 51601122 51601142 -70242714 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 978 792 218 16 32 chr11 51601216 51601401 -70242455 - B3A SINE B2 -16 182 1 3 978 898 177 7 0 chr11 51602854 51603001 -70240855 - B1_Mur2 SINE Alu -1 148 1 3 978 1107 50 65 0 chr11 51603018 51603157 -70240699 + B1_Mus1 SINE Alu 1 148 0 3 978 301 90 330 34 chr11 51603218 51603333 -70240523 - B2_Mm2 SINE B2 0 195 47 3 978 1196 115 11 0 chr11 51603365 51603539 -70240317 - B2_Mm1t SINE B2 -14 179 4 3 978 231 140 0 0 chr11 51603545 51603595 -70240261 + (T)n Simple_repeat Simple_repeat 1 50 0 3 978 350 162 49 24 chr11 51603719 51603801 -70240055 - B3 SINE B2 -132 84 1 3 978 790 168 182 11 chr11 51603812 51603993 -70239863 - B3 SINE B2 -4 212 1 3 978 373 267 65 19 chr11 51604038 51604145 -70239711 + PB1D10 SINE Alu 5 116 -1 3 978 453 218 124 26 chr11 51604484 51604597 -70239259 - PB1D10 SINE Alu -2 125 2 3 978 216 0 0 0 chr11 51605704 51605728 -70238128 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 978 431 0 17 0 chr11 51606215 51606273 -70237583 + B1_Mm SINE Alu 89 147 0 3 978 287 242 119 191 chr11 51606308 51606460 -70237396 - B3A SINE B2 -16 182 39 3 978 1126 89 0 7 chr11 51606460 51606607 -70237249 - B1_Mus1 SINE Alu -1 147 2 3 978 287 242 119 191 chr11 51606607 51606648 -70237208 - B3A SINE B2 -160 38 3 3 978 340 164 29 29 chr11 51606650 51606719 -70237137 + RLTR14-int LTR ERV1 849 917 -4400 3 978 366 148 56 90 chr11 51606974 51607063 -70236793 + RLTR14-int LTR ERV1 946 1031 -4286 3 978 1856 111 90 171 chr11 51607068 51607536 -70236320 + RLTR23 LTR ERV1 1 430 0 3 978 464 321 63 21 chr11 51607841 51608153 -70235703 + MURVY-int LTR ERV1 4032 4460 -3146 3 978 307 211 53 0 chr11 51608611 51608687 -70235169 + ID4_ SINE ID 3 82 -1 3 978 1275 80 0 134 chr11 51608698 51608766 -70235090 - B2_Mm2 SINE B2 -7 188 149 3 978 1254 48 0 0 chr11 51608766 51608913 -70234943 - B1_Mm SINE Alu 0 147 1 3 978 1275 80 0 134 chr11 51608913 51609060 -70234796 - B2_Mm2 SINE B2 -47 148 2 3 978 1435 75 5 5 chr11 51609063 51609250 -70234606 - B2_Mm1t SINE B2 -6 187 1 3 978 272 238 0 0 chr11 51609601 51609664 -70234192 + PB1D10 SINE Alu 49 111 -6 3 978 1011 253 71 88 chr11 51609714 51610194 -70233662 + RLTR12B LTR ERVK 42 513 -15 3 978 844 118 37 0 chr11 51610194 51610329 -70233527 + B1_Mus2 SINE Alu 2 141 -6 3 978 279 0 0 0 chr11 51610331 51610362 -70233494 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 978 457 215 156 8 chr11 51610500 51610622 -70233234 - B1_Mur1 SINE Alu 0 149 10 3 978 1193 44 13 0 chr11 51611491 51611649 -70232207 + B2_Mm2 SINE B2 1 160 -35 3 978 254 29 0 28 chr11 51611651 51611687 -70232169 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 978 247 250 0 0 chr11 51611762 51611814 -70232042 - ID4 SINE ID -22 61 10 3 978 1136 66 0 0 chr11 51611910 51612047 -70231809 + B1_Mm SINE Alu 1 137 -10 3 978 351 0 0 0 chr11 51612047 51612086 -70231770 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 978 280 290 0 0 chr11 51612113 51612182 -70231674 + B3 SINE B2 6 74 -142 3 978 914 161 0 20 chr11 51612190 51612336 -70231520 + B1_Mm SINE Alu 5 147 0 3 978 203 238 0 0 chr11 51612361 51612403 -70231453 + CT-rich Low_complexity Low_complexity 3 44 0 3 978 1012 236 25 0 chr11 51612419 51612618 -70231238 + B3 SINE B2 2 205 -11 3 978 1126 197 9 18 chr11 51612786 51613003 -70230853 + B3 SINE B2 2 216 0 3 978 483 177 13 0 chr11 51613147 51613226 -70230630 - ID4 SINE ID 0 83 4 3 978 283 307 111 28 chr11 51613371 51613515 -70230341 - B4A SINE B4 -121 171 16 3 978 1017 108 13 26 chr11 51613554 51613706 -70230150 + B1_Mur4 SINE Alu 1 150 0 3 978 1239 45 0 0 chr11 51613746 51613900 -70229956 + (GGAA)n Simple_repeat Simple_repeat 1 154 0 3 978 1374 66 60 0 chr11 51613900 51614082 -70229774 + B2_Mm2 SINE B2 3 195 0 3 978 1199 62 7 0 chr11 51614092 51614238 -70229618 + B1_Mm SINE Alu 1 147 0 3 978 234 0 0 0 chr11 51614238 51614264 -70229592 + (A)n Simple_repeat Simple_repeat 1 26 0 3 978 1165 224 60 41 chr11 51614973 51615289 -70228567 + RLTR26 LTR ERVK 96 417 -225 3 978 208 108 54 0 chr11 51615308 51615345 -70228511 + (CACAG)n Simple_repeat Simple_repeat 4 42 0 3 978 619 107 62 54 chr11 51615345 51615474 -70228382 + B2_Mm2 SINE B2 66 195 0 3 978 442 243 75 8 chr11 51615485 51615618 -70228238 + ID_B1 SINE B4 69 204 -20 3 978 282 260 53 27 chr11 51615952 51616027 -70227829 - RSINE1 SINE B4 0 165 89 3 978 2115 220 78 15 chr11 51616029 51616118 -70227738 - RLTR20B1 LTR ERVK -2 561 472 4 978 387 0 0 0 chr11 51616118 51616161 -70227695 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 978 2115 220 78 15 chr11 51616161 51616598 -70227258 - RLTR20B1 LTR ERVK -92 471 3 4 978 313 198 136 0 chr11 51616599 51616680 -70227176 - RSINE1 SINE B4 -71 94 3 3 978 615 27 0 0 chr11 51616688 51616761 -70227095 + (TTTTC)n Simple_repeat Simple_repeat 3 75 0 4 978 1207 83 6 0 chr11 51616761 51616930 -70226926 - B2_Mm1a SINE B2 -22 171 2 4 978 647 57 0 11 chr11 51616930 51617019 -70226837 + (TTCTC)n Simple_repeat Simple_repeat 4 91 0 4 978 968 58 7 55 chr11 51617043 51617189 -70226667 - B1_Mm SINE Alu 0 147 9 4 978 210 270 92 26 chr11 51617457 51617533 -70226323 + ID4 SINE ID 3 83 0 4 978 1547 62 0 5 chr11 51618464 51618659 -70225197 + B2_Mm2 SINE B2 2 195 0 4 978 269 159 11 0 chr11 51618710 51618762 -70225094 + B3A SINE B2 1 57 -138 4 978 797 205 57 145 chr11 51618815 51619077 -70224779 + RLTR42 LTR ERVK 1 239 0 4 978 338 119 75 0 chr11 51619077 51619140 -70224716 + B3 SINE B2 149 216 0 4 978 836 183 14 0 chr11 51619416 51619558 -70224298 + B1_Mur4 SINE Alu 1 144 -6 4 978 370 266 46 23 chr11 51619748 51619879 -70223977 - RMER15 LTR ERVL -65 510 377 4 978 263 48 48 0 chr11 51620369 51620398 -70223458 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 978 1715 31 0 0 chr11 51620398 51620591 -70223265 - B2_Mm1a SINE B2 0 193 1 4 978 263 48 48 0 chr11 51620591 51620603 -70223253 + (TTTTG)n Simple_repeat Simple_repeat 3 16 0 4 978 439 321 40 59 chr11 51621099 51621301 -70222555 + B3A SINE B2 1 198 0 4 978 198 103 0 0 chr11 51622123 51622152 -70221704 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 4 978 225 65 0 0 chr11 51622184 51622215 -70221641 + (T)n Simple_repeat Simple_repeat 1 31 0 4 978 360 0 0 0 chr11 51622247 51622287 -70221569 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 978 1246 14 0 0 chr11 51622287 51622425 -70221431 - B1_Mus2 SINE Alu -9 138 1 4 978 2991 6 0 3 chr11 51622449 51622781 -70221075 - L1Md_A LINE L1 0 6582 6252 4 978 252 222 53 53 chr11 51622781 51622857 -70220999 - ID_B1 SINE B4 -38 186 111 4 978 331 243 14 0 chr11 51623200 51623270 -70220586 - ID4 SINE ID -7 76 6 4 978 518 246 15 53 chr11 51623486 51623619 -70220237 + B3 SINE B2 88 215 -1 4 978 428 141 0 0 chr11 51623662 51623726 -70220130 + ORR1C2 LTR MaLR 4 67 -307 4 978 642 114 56 16 chr11 51623710 51623835 -70220021 + ORR1C2 LTR MaLR 255 384 0 4 978 701 151 84 0 chr11 51624062 51624181 -70219675 + B1_Mur3 SINE Alu 5 133 -16 4 978 459 0 0 0 chr11 51624181 51624232 -70219624 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 978 358 296 0 36 chr11 51624236 51624348 -70219508 - B3A SINE B2 -89 109 2 4 978 335 233 26 52 chr11 51624393 51624470 -70219386 - RSINE1 SINE B4 -14 151 77 4 978 260 260 26 0 chr11 51624506 51624583 -70219273 - ID4 SINE ID 0 83 5 4 978 674 122 0 42 chr11 51624667 51624679 -70219177 - B1_Mur4 SINE Alu -1 149 140 4 978 246 32 0 0 chr11 51624679 51624710 -70219146 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 978 674 122 0 42 chr11 51624710 51624817 -70219039 - B1_Mur4 SINE Alu -11 139 35 4 978 1197 152 28 28 chr11 51624840 51625056 -70218800 - B3 SINE B2 0 216 1 4 978 1206 48 0 13 chr11 51625308 51625457 -70218399 - B1_Mus1 SINE Alu 0 148 2 4 978 452 266 0 50 chr11 51625545 51625664 -70218192 + PB1D10 SINE Alu 4 116 -1 4 978 325 284 133 7 chr11 51625967 51626102 -70217754 + ID_B1 SINE B4 69 220 -4 4 978 274 250 117 13 chr11 51626142 51626219 -70217637 - ID SINE ID -138 86 2 4 978 340 308 39 55 chr11 51626222 51626349 -70217507 + Tigger7 DNA MER2_type 20 144 -2347 4 978 535 261 84 7 chr11 51633280 51633423 -70210433 + B3 SINE B2 55 208 -8 4 978 766 233 88 21 chr11 51633436 51633629 -70210227 - ID_B1 SINE B4 -18 206 1 4 978 593 222 52 0 chr11 51633630 51633765 -70210091 - B3 SINE B2 -74 142 1 4 978 508 89 0 2 chr11 51635511 51635592 -70208264 + B1_Mus2 SINE Alu 1 80 -37 4 978 305 253 121 0 chr11 51636547 51636638 -70207218 + MLT1C LTR MaLR 59 160 -307 4 978 942 213 0 6 chr11 51640449 51640614 -70203242 - RSINE1 SINE B4 0 165 2 4 978 589 243 73 4 chr11 51640980 51641129 -70202727 - ID_B1 SINE B4 -52 240 78 4 978 2174 94 53 37 chr11 51641311 51641633 -70202223 + ORR1A2 LTR MaLR 1 327 0 4 978 1598 37 10 21 chr11 51642169 51642363 -70201493 - B2_Mm1a SINE B2 -1 192 1 4 979 1014 194 64 15 chr11 51642704 51642908 -70200948 + B3 SINE B2 2 215 -1 4 979 814 197 71 5 chr11 51642937 51643121 -70200735 + B3A SINE B2 2 197 -1 4 979 345 288 71 57 chr11 51643227 51643367 -70200489 - RSINE1 SINE B4 -19 146 5 4 979 262 283 0 0 chr11 51643435 51643495 -70200361 - ID4_ SINE ID -7 76 17 4 979 288 330 0 28 chr11 51643527 51643636 -70200220 - MIR SINE MIR -123 139 34 4 979 486 0 0 0 chr11 51645851 51645905 -70197951 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 979 270 373 7 39 chr11 51647060 51647211 -70196645 + MIRb SINE MIR 37 180 -96 4 979 235 191 143 0 chr11 51647537 51647600 -70196256 + ID_B1 SINE B4 153 224 0 4 979 260 173 36 24 chr11 51647940 51648023 -70195833 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 4 979 186 191 24 0 chr11 51648090 51648132 -70195724 + MIRm SINE MIR 219 261 -15 4 979 515 258 34 13 chr11 51649323 51649466 -70194390 + RSINE1 SINE B4 2 139 -153 4 979 757 34 203 32 chr11 51649924 51650047 -70193809 + B2_Mm2 SINE B2 2 145 -50 4 979 189 0 0 0 chr11 51650047 51650068 -70193788 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 979 491 187 80 9 chr11 51651033 51651146 -70192710 + B1F2 SINE Alu 29 149 0 4 979 813 245 78 5 chr11 51651148 51651353 -70192503 + ID_B1 SINE B4 4 223 -1 4 979 683 263 7 19 chr11 51652014 51652169 -70191687 + ID_B1 SINE B4 4 156 -68 4 979 378 326 31 8 chr11 51652183 51652313 -70191543 + RSINE1 SINE B4 17 149 -16 4 979 213 65 0 0 chr11 51652325 51652356 -70191500 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 979 1087 246 14 0 chr11 51653614 51653834 -70190022 + ID_B1 SINE B4 1 223 -1 4 979 873 29 0 0 chr11 51654037 51654141 -70189715 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 979 651 284 70 17 chr11 51654150 51654322 -70189534 - B3A SINE B2 -16 182 2 4 979 873 258 24 0 chr11 51655099 51655312 -70188544 - ID_B1 SINE B4 -5 219 2 4 979 525 280 89 5 chr11 51655328 51655404 -70188452 - ID_B1 SINE B4 -17 207 123 4 979 364 283 105 35 chr11 51655404 51655547 -70188309 - RSINE1 SINE B4 -12 153 1 4 979 525 280 89 5 chr11 51655547 51655660 -70188196 - ID_B1 SINE B4 -102 122 3 4 979 1836 154 44 82 chr11 51656148 51656537 -70187319 + ORR1D1 LTR MaLR 1 374 0 4 979 351 44 0 0 chr11 51656623 51656668 -70187188 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 979 1666 95 9 0 chr11 51658806 51659038 -70184818 + L1_Mus3 LINE L1 6405 6638 0 4 979 329 331 127 21 chr11 51659163 51659305 -70184551 + RSINE1 SINE B4 1 157 -8 4 979 274 272 0 186 chr11 51660688 51660828 -70183028 + MTE2b LTR MaLR 1 114 -265 4 979 687 161 31 106 chr11 51661220 51661380 -70182476 - B1_Mur1 SINE Alu 0 149 2 4 979 268 233 151 0 chr11 51662009 51662082 -70181774 - L2b LINE L2 -1 3374 3291 4 979 336 268 20 20 chr11 51664365 51664464 -70179392 - MER102b DNA MER1_type -222 119 21 4 979 193 316 106 37 chr11 51665104 51665321 -70178535 + L2 LINE L2 2643 2874 -545 4 979 286 288 14 0 chr11 51665430 51665503 -70178353 - ID4_ SINE ID -3 80 7 4 979 207 100 0 0 chr11 51666316 51666346 -70177510 + (GAA)n Simple_repeat Simple_repeat 2 31 0 4 979 215 232 89 0 chr11 51667164 51667220 -70176636 - ID2 SINE ID -22 61 1 4 979 183 236 266 28 chr11 51667261 51667370 -70176486 - MIRb SINE MIR -94 174 40 4 979 22 0 0 0 chr11 51668988 51669010 -70174846 + AT_rich Low_complexity Low_complexity 1 22 0 4 979 213 292 6 67 chr11 51669127 51669307 -70174549 + G-rich Low_complexity Low_complexity 6 174 0 4 979 24 0 0 0 chr11 51669637 51669661 -70174195 + GC_rich Low_complexity Low_complexity 1 24 0 4 979 21 71 0 0 chr11 51670452 51670494 -70173362 + GC_rich Low_complexity Low_complexity 1 42 0 4 979 213 125 62 0 chr11 51670676 51670724 -70173132 + (CGAG)n Simple_repeat Simple_repeat 3 53 0 4 979 26 0 0 0 chr11 51670854 51670880 -70172976 + GC_rich Low_complexity Low_complexity 1 26 0 4 979 23 33 0 0 chr11 51670908 51670938 -70172918 + GC_rich Low_complexity Low_complexity 1 30 0 4 979 185 0 0 39 chr11 51671211 51671237 -70172619 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 4 979 190 295 102 51 chr11 51673345 51673463 -70170393 + MIRm SINE MIR 56 179 -97 4 979 575 266 41 31 chr11 51673622 51673816 -70170040 - B3A SINE B2 -2 196 1 4 979 529 231 5 0 chr11 51674691 51674809 -70169047 + B1F SINE Alu 1 122 -27 4 979 195 129 0 0 chr11 51674861 51674892 -70168964 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 979 557 258 6 65 chr11 51674908 51675078 -70168778 - B3A SINE B2 0 198 39 4 979 201 147 0 0 chr11 51675094 51675128 -70168728 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 979 365 211 189 0 chr11 51675131 51675221 -70168635 - B1F SINE Alu -25 124 18 4 979 21 36 0 0 chr11 51675293 51675321 -70168535 + AT_rich Low_complexity Low_complexity 1 28 0 4 979 1161 61 0 0 chr11 51675325 51675473 -70168383 - B1_Mus1 SINE Alu 0 148 1 5 979 454 214 20 0 chr11 51675477 51675575 -70168281 - B3 SINE B2 0 216 117 5 979 417 20 0 0 chr11 51675618 51675668 -70168188 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 979 987 260 151 8 chr11 51675709 51676073 -70167783 + Charlie4a DNA MER1_type 2 417 -91 5 979 303 297 69 92 chr11 51676082 51676212 -70167644 + ID_B1 SINE B4 88 214 -10 5 979 585 328 164 69 chr11 51676343 51676658 -70167198 - L2 LINE L2 -486 2933 2614 5 979 351 329 71 13 chr11 51676658 51676812 -70167044 + RSINE1 SINE B4 3 165 0 5 979 585 328 164 69 chr11 51676812 51677214 -70166642 - L2 LINE L2 -806 2613 2151 5 979 846 223 52 9 chr11 51677214 51677427 -70166429 + ID_B1 SINE B4 1 222 -2 5 979 585 328 164 69 chr11 51677427 51677517 -70166339 - L2 LINE L2 -1269 2150 2048 5 979 210 231 0 37 chr11 51677528 51677582 -70166274 + B1F SINE Alu 1 52 -97 5 979 754 154 28 14 chr11 51677607 51677752 -70166104 + B1_Mus2 SINE Alu 1 147 0 5 979 205 209 0 0 chr11 51677768 51677811 -70166045 - L2 LINE L2 -1393 2026 1984 5 979 375 131 24 12 chr11 51677831 51677916 -70165940 + L1Md_F2 LINE L1 6496 6581 -1 5 979 183 42 0 0 chr11 51678034 51678058 -70165798 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 979 1009 83 7 46 chr11 51678213 51678227 -70165629 - B1_Mus1 SINE Alu -1 147 137 5 979 198 0 0 0 chr11 51678227 51678249 -70165607 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 979 1009 83 7 46 chr11 51678249 51678386 -70165470 - B1_Mus1 SINE Alu -12 136 2 5 979 485 290 28 21 chr11 51678396 51678537 -70165319 - B1F SINE Alu -4 145 4 5 979 360 43 0 0 chr11 51678579 51678625 -70165231 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 979 861 158 7 0 chr11 51678625 51678764 -70165092 - B1_Mur4 SINE Alu -3 147 8 5 979 270 176 0 0 chr11 51678781 51678832 -70165024 + (TTA)n Simple_repeat Simple_repeat 1 51 0 5 979 324 254 154 141 chr11 51678832 51679052 -70164804 - ID_B1 SINE B4 -1 223 1 5 979 628 233 188 0 chr11 51679096 51679272 -70164584 - B3 SINE B2 -7 209 1 5 979 319 221 15 0 chr11 51679535 51679603 -70164253 - L2a LINE L2 -3 3423 3355 5 979 1202 96 39 0 chr11 51680025 51680203 -70163653 + B2_Mm2 SINE B2 2 186 -9 5 979 390 212 16 74 chr11 51680203 51680325 -70163531 - PB1D9 SINE Alu -5 115 1 5 979 891 196 16 109 chr11 51680331 51680578 -70163278 - ID_B1 SINE B4 0 224 1 5 979 242 167 0 23 chr11 51680685 51680728 -70163128 - L2a LINE L2 -6 3369 3328 5 979 1325 84 10 16 chr11 51681355 51681548 -70162308 + B2_Mm1t SINE B2 2 193 0 5 979 620 272 53 0 chr11 51681582 51681658 -70162198 + ID_B1 SINE B4 6 90 -134 5 979 276 252 59 101 chr11 51681658 51681777 -70162079 + PB1D10 SINE Alu 3 116 -1 5 979 725 201 28 0 chr11 51681838 51681982 -70161874 - B1_Mur2 SINE Alu 0 149 2 5 979 316 308 46 8 chr11 51682345 51682476 -70161380 - ORR1E LTR MaLR -223 136 1 5 979 1089 181 0 10 chr11 51682834 51683035 -70160821 + B3 SINE B2 2 200 -16 5 979 311 330 10 20 chr11 51683249 51683351 -70160505 + ID_B1 SINE B4 66 166 -58 5 979 535 192 87 0 chr11 51683349 51683453 -70160403 - B1_Mur2 SINE Alu -36 113 1 5 979 764 210 96 11 chr11 51683498 51683686 -70160170 - B3 SINE B2 -12 204 1 5 979 561 271 0 0 chr11 51683687 51683816 -70160040 + ID_B1 SINE B4 93 221 -3 5 979 450 0 0 0 chr11 51683818 51683868 -70159988 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 979 502 302 27 0 chr11 51684406 51684551 -70159305 + ID_B1 SINE B4 2 150 -74 5 979 680 238 26 13 chr11 51684557 51684710 -70159146 + RSINE1 SINE B4 11 165 0 5 979 283 308 19 106 chr11 51684710 51684758 -70159098 + B2_Mm2 SINE B2 19 189 -6 5 979 274 196 0 0 chr11 51684754 51684805 -70159051 + ID_B1 SINE B4 143 193 -31 5 979 484 269 64 0 chr11 51685573 51685714 -70158142 + RSINE1 SINE B4 2 151 -14 5 979 200 176 0 0 chr11 51685820 51685854 -70158002 + G-rich Low_complexity Low_complexity 4 37 0 5 979 374 243 0 90 chr11 51686204 51686326 -70157530 + PB1D9 SINE Alu 10 120 0 5 979 761 251 43 0 chr11 51686435 51686642 -70157214 - B3 SINE B2 0 216 1 5 979 1093 75 0 7 chr11 51686949 51687097 -70156759 + B1_Mus1 SINE Alu 2 148 0 5 979 378 0 0 0 chr11 51687133 51687175 -70156681 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 5 979 708 243 7 0 chr11 51687189 51687333 -70156523 + B3A SINE B2 9 153 -45 5 979 942 101 0 57 chr11 51687424 51687582 -70156274 + B1_Mur4 SINE Alu 2 150 0 5 979 243 88 0 0 chr11 51687582 51687616 -70156240 + (A)n Simple_repeat Simple_repeat 1 34 0 5 979 281 262 19 33 chr11 51687751 51687867 -70155989 + L2a LINE L2 3016 3128 -298 5 979 494 308 106 42 chr11 51688545 51688809 -70155047 - MLT1C LTR MaLR 0 467 187 5 979 210 143 0 0 chr11 51688822 51688857 -70154999 + (TCC)n Simple_repeat Simple_repeat 2 36 0 5 979 213 200 30 30 chr11 51688910 51688977 -70154879 + CT-rich Low_complexity Low_complexity 4 70 0 5 979 198 0 0 0 chr11 51688981 51689003 -70154853 + (CCCCCT)n Simple_repeat Simple_repeat 2 23 0 5 979 489 234 29 88 chr11 51689043 51689179 -70154677 - B1F1 SINE Alu -21 128 1 5 979 493 226 104 25 chr11 51689179 51689342 -70154514 - MLT1C LTR MaLR -279 188 13 5 979 1904 144 22 43 chr11 51689459 51689829 -70154027 + ORR1B2 LTR MaLR 6 367 0 5 979 2124 108 23 74 chr11 51691515 51691947 -70151909 - RMER17C LTR ERVK 0 410 1 5 979 492 200 208 48 chr11 51692362 51692530 -70151326 - ID_B1 SINE B4 -29 195 1 5 979 204 40 0 0 chr11 51692617 51692642 -70151214 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 979 918 116 36 0 chr11 51692642 51692780 -70151076 - B2_Mm2 SINE B2 -49 146 4 5 979 205 204 0 22 chr11 51692818 51692863 -70150993 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 979 281 308 11 22 chr11 51693356 51693478 -70150378 - B4A SINE B4 -44 121 1 5 979 654 219 63 58 chr11 51693492 51693666 -70150190 - B3A SINE B2 -22 176 2 5 979 275 333 66 16 chr11 51693852 51693974 -70149882 + MIR SINE MIR 85 216 -52 5 979 631 212 23 8 chr11 51694091 51694224 -70149632 + RSINE1 SINE B4 2 136 -29 5 979 286 259 24 36 chr11 51695178 51695262 -70148594 + Cheshire DNA MER1_type 9 91 -2329 5 979 374 239 10 42 chr11 51695263 51695358 -70148498 - ID_B1 SINE B4 -2 222 131 5 979 1457 225 36 95 chr11 51695358 51695800 -70148056 + MTD LTR MaLR 1 416 -3 5 979 356 276 96 16 chr11 51695804 51695929 -70147927 - ID_B1 SINE B4 -89 135 1 5 979 227 239 73 15 chr11 51695933 51696001 -70147855 + Cheshire DNA MER1_type 81 152 -2268 5 979 723 246 80 0 chr11 51696044 51696231 -70147625 + B3 SINE B2 2 203 -13 5 979 651 170 39 78 chr11 51696257 51696410 -70147446 + B1_Mm SINE Alu 1 147 0 5 979 842 222 58 0 chr11 51696412 51696583 -70147273 + B3 SINE B2 30 210 -6 5 979 204 283 0 0 chr11 51696917 51696970 -70146886 + MIRc SINE MIR 97 149 -119 5 979 374 172 20 20 chr11 51697498 51697599 -70146257 + CT-rich Low_complexity Low_complexity 1 101 0 5 979 330 280 110 0 chr11 51697599 51697699 -70146157 - B1F SINE Alu -6 143 33 5 979 315 85 0 0 chr11 51698067 51698114 -70145742 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 979 1044 135 42 21 chr11 51698145 51698334 -70145522 - B3 SINE B2 0 216 24 5 979 27 0 0 0 chr11 51698422 51698449 -70145407 + AT_rich Low_complexity Low_complexity 1 27 0 5 979 738 187 60 0 chr11 51698453 51698587 -70145269 + B1_Mur2 SINE Alu 1 142 -7 5 979 212 0 0 35 chr11 51698590 51698619 -70145237 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 979 892 215 68 0 chr11 51698634 51698825 -70145031 - B3 SINE B2 -11 205 2 5 979 477 0 0 0 chr11 51698848 51698901 -70144955 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 5 979 325 120 8 34 chr11 51698916 51698982 -70144874 - B2_Mm2 SINE B2 -102 114 47 5 979 1105 125 17 0 chr11 51699023 51699199 -70144657 - B2_Mm1t SINE B2 -14 179 1 5 979 566 241 71 12 chr11 51699269 51699437 -70144419 - L1ME3A LINE L1 -122 6051 5874 5 979 347 257 0 0 chr11 51699682 51699756 -70144100 - ID_B1 SINE B4 -36 188 115 5 979 225 269 0 19 chr11 51699774 51699827 -70144029 - ID2 SINE ID -8 75 24 5 979 843 176 0 0 chr11 51699861 51700003 -70143853 - B1_Mur2 SINE Alu -6 143 2 5 979 456 257 43 7 chr11 51700086 51700227 -70143629 - RMER15 LTR ERVL -42 533 388 5 979 1207 34 0 0 chr11 51700822 51700968 -70142888 + B1_Mm SINE Alu 2 147 0 5 979 219 69 0 0 chr11 51700968 51700997 -70142859 + (A)n Simple_repeat Simple_repeat 1 29 0 5 979 1317 49 42 26 chr11 51701229 51701418 -70142438 + B2_Mm2 SINE B2 3 194 -1 5 979 388 46 0 58 chr11 51701676 51701745 -70142111 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 979 837 186 14 0 chr11 51702038 51702183 -70141673 - B1_Mur4 SINE Alu -3 147 1 5 979 1032 209 25 5 chr11 51702414 51702616 -70141240 - B3 SINE B2 -10 206 1 5 979 213 211 39 0 chr11 51702624 51702676 -70141180 + (TTTG)n Simple_repeat Simple_repeat 1 54 0 5 979 314 197 39 26 chr11 51702682 51702760 -70141096 - PB1 SINE Alu -23 104 26 5 979 342 0 0 0 chr11 51702863 51702901 -70140955 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 979 287 265 15 0 chr11 51702924 51702992 -70140864 - ID4_ SINE ID -13 70 2 5 979 4928 149 41 23 chr11 51703040 51703925 -70139931 - RMER19B LTR ERVK 0 902 2 5 979 367 239 104 64 chr11 51703949 51704074 -70139782 - RSINE1 SINE B4 -33 132 3 5 979 206 62 0 30 chr11 51704091 51704124 -70139732 + (TCC)n Simple_repeat Simple_repeat 2 33 0 5 979 2812 56 24 0 chr11 51704154 51704531 -70139325 + MT2C_Mm LTR ERVL 90 475 0 6 979 288 221 128 13 chr11 51704547 51704625 -70139231 - B1F SINE Alu -51 98 12 6 979 234 296 70 0 chr11 51704577 51704648 -70139208 - ID_B1 SINE B4 -84 140 65 6 979 405 0 0 0 chr11 51704729 51704774 -70139082 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 979 240 35 0 0 chr11 51704935 51704964 -70138892 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 979 189 0 0 0 chr11 51704964 51704984 -70138872 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 979 656 40 40 0 chr11 51705010 51705110 -70138746 + (CA)n Simple_repeat Simple_repeat 1 104 0 6 979 482 281 78 0 chr11 51705114 51705242 -70138614 + RSINE1 SINE B4 28 165 0 6 979 318 229 13 67 chr11 51705320 51705395 -70138461 - B4A SINE B4 -4 288 218 6 979 601 232 35 7 chr11 51705430 51705573 -70138283 - RSINE1 SINE B4 -16 149 3 6 979 684 276 60 21 chr11 51705661 51705894 -70137962 - B4A SINE B4 -50 242 1 6 979 216 254 85 0 chr11 51705927 51705986 -70137870 - PB1D7 SINE Alu -3 117 54 6 979 229 355 57 13 chr11 51706059 51706216 -70137640 - MLT1K LTR MaLR -230 365 202 6 979 1856 153 67 19 chr11 51706445 51706817 -70137039 + ORR1B1 LTR MaLR 5 394 0 6 979 414 261 29 52 chr11 51706983 51707157 -70136699 + B3A SINE B2 28 197 -1 6 979 29 0 0 0 chr11 51707162 51707191 -70136665 + AT_rich Low_complexity Low_complexity 1 29 0 6 979 480 73 0 0 chr11 51707194 51707262 -70136594 + U2 snRNA snRNA 120 187 -1 6 979 1135 68 7 0 chr11 51707490 51707636 -70136220 + B1_Mus1 SINE Alu 2 148 0 6 979 230 200 18 0 chr11 51707642 51707697 -70136159 - MLT1K LTR MaLR -519 76 21 6 979 1129 35 28 0 chr11 51707759 51707902 -70135954 + B1_Mus1 SINE Alu 2 148 0 6 979 291 168 0 0 chr11 51708669 51708732 -70135124 + ID4 SINE ID 2 64 -88 6 979 519 231 65 77 chr11 51709049 51709218 -70134638 + ID_B1 SINE B4 51 217 -7 6 979 564 219 49 79 chr11 51709229 51709393 -70134463 + RSINE1 SINE B4 3 161 -4 6 979 235 261 0 55 chr11 51709867 51709940 -70133916 + LTR50 LTR ERVL 239 307 -488 6 979 338 272 39 156 chr11 51710137 51710173 -70133683 + B4A SINE B4 63 97 -195 6 979 992 228 14 5 chr11 51710173 51710389 -70133467 + ID_B1 SINE B4 5 222 -2 6 979 771 188 0 0 chr11 51710398 51710531 -70133325 + B1_Mur1 SINE Alu 10 142 -7 6 979 203 234 0 30 chr11 51710540 51710606 -70133250 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 6 979 347 260 80 27 chr11 51711101 51711251 -70132605 - L2 LINE L2 -1030 2389 2232 6 979 221 245 0 0 chr11 51711326 51711375 -70132481 - PB1D7 SINE Alu -7 113 65 6 979 693 228 31 12 chr11 51711480 51711640 -70132216 - RSINE1 SINE B4 0 165 3 6 979 338 370 78 14 chr11 51711674 51712044 -70131812 - L2 LINE L2 -1366 2053 1660 6 979 524 230 54 31 chr11 51712044 51712174 -70131682 + ID_B1 SINE B4 82 214 -10 6 979 585 0 0 0 chr11 51712182 51712247 -70131609 + (GAAA)n Simple_repeat Simple_repeat 3 67 0 6 979 501 257 199 0 chr11 51712294 51712500 -70131356 - L2 LINE L2 -1813 1606 1360 6 979 226 313 60 12 chr11 51713061 51713074 -70130782 - YREP_Mm Unknown Unknown -1484 328 292 6 979 283 214 0 0 chr11 51713074 51713130 -70130726 + PB1D9 SINE Alu 6 61 -59 6 979 226 313 60 12 chr11 51713130 51713145 -70130711 - YREP_Mm Unknown Unknown -1484 291 241 6 979 304 324 54 72 chr11 51713206 51713520 -70130336 - B4A SINE B4 -3 289 3 6 979 280 236 102 19 chr11 51713576 51713684 -70130172 + PB1D10 SINE Alu 1 117 0 6 979 188 301 196 0 chr11 51713806 51713939 -70129917 - L2 LINE L2 -2944 475 317 6 979 915 238 23 0 chr11 51714405 51714619 -70129237 + ID_B1 SINE B4 4 222 -2 6 979 861 196 28 42 chr11 51714625 51714838 -70129018 + B3 SINE B2 4 213 -3 6 979 460 232 80 0 chr11 51715144 51715256 -70128600 + RSINE1 SINE B4 40 160 -5 6 979 249 267 0 39 chr11 51715312 51715390 -70128466 + B3A SINE B2 112 186 -12 6 979 604 226 90 8 chr11 51715405 51715539 -70128317 + B1_Mur2 SINE Alu 5 149 0 6 979 261 0 0 0 chr11 51715581 51715610 -70128246 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 979 225 0 0 0 chr11 51715610 51715634 -70128222 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 979 582 327 48 82 chr11 51715670 51716206 -70127650 - L1M5 LINE L1 -2137 4009 3492 6 979 1034 52 73 0 chr11 51716260 51716396 -70127460 - B1_Mus2 SINE Alu 0 147 2 6 979 229 197 32 32 chr11 51716398 51716461 -70127395 - ID_B1 SINE B4 -70 154 92 6 979 4553 152 67 45 chr11 51716462 51717345 -70126511 - RMER19B LTR ERVK 0 902 1 6 979 328 250 56 22 chr11 51717345 51717435 -70126421 - ID_B1 SINE B4 -128 96 4 6 979 297 250 41 10 chr11 51717444 51717541 -70126315 + CT-rich Low_complexity Low_complexity 2 101 0 6 979 346 275 0 0 chr11 51717541 51717621 -70126235 - ID_B1 SINE B4 0 224 145 6 979 358 250 87 26 chr11 51717668 51717783 -70126073 - RSINE1 SINE B4 -15 150 29 6 979 323 259 44 10 chr11 51717877 51718033 -70125823 - L1M5 LINE L1 -2643 3497 3336 6 979 189 0 0 0 chr11 51718172 51718193 -70125663 + (T)n Simple_repeat Simple_repeat 1 21 0 6 979 1000 129 0 0 chr11 51718193 51718340 -70125516 - B1_Mus1 SINE Alu 0 148 2 6 979 284 333 25 0 chr11 51718343 51718424 -70125432 - B4A SINE B4 -36 256 174 6 979 453 189 0 0 chr11 51718574 51718664 -70125192 + CT-rich Low_complexity Low_complexity 1 90 0 6 979 795 201 0 0 chr11 51718664 51718803 -70125053 - B1_Mus1 SINE Alu -9 139 1 6 979 508 205 161 19 chr11 51718866 51719013 -70124843 - B1F SINE Alu 0 150 9 6 979 279 0 0 0 chr11 51719102 51719133 -70124723 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 6 979 670 246 0 0 chr11 51719170 51719312 -70124544 + ID_B1 SINE B4 82 223 -1 6 979 689 286 13 31 chr11 51719312 51719536 -70124320 + ID_B1 SINE B4 3 222 -2 6 979 198 143 0 0 chr11 51719536 51719571 -70124285 + (CAG)n Simple_repeat Simple_repeat 1 35 0 6 979 447 202 0 0 chr11 51719857 51719961 -70123895 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 979 378 294 60 112 chr11 51720006 51720255 -70123601 - B4A SINE B4 -14 278 43 6 979 343 292 7 99 chr11 51720288 51720440 -70123416 + L1M5 LINE L1 5597 5734 -390 6 979 558 230 53 13 chr11 51720763 51720913 -70122943 - RSINE1 SINE B4 -7 158 3 6 979 339 296 72 27 chr11 51720913 51720968 -70122888 - L1M4 LINE L1 -2403 3743 3690 6 979 189 0 0 0 chr11 51720968 51720989 -70122867 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 979 339 296 72 27 chr11 51720989 51721044 -70122812 - L1M4 LINE L1 -2457 3689 3628 6 979 333 271 134 8 chr11 51721082 51721216 -70122640 - ID_B1 SINE B4 -10 214 64 6 979 289 257 171 0 chr11 51721484 51721624 -70122232 - Lx8 LINE L1 -440 7033 6870 6 979 417 233 12 0 chr11 51721621 51721707 -70122149 + Lx8 LINE L1 6540 6626 -847 6 979 844 350 72 10 chr11 51721703 51722121 -70121735 + Lx8 LINE L1 7030 7473 0 6 979 527 200 25 34 chr11 51722127 51722246 -70121610 + PB1D9 SINE Alu 1 118 -2 6 979 796 216 51 11 chr11 51722253 51722431 -70121425 + B3A SINE B2 2 186 -12 6 979 343 226 56 19 chr11 51722529 51722637 -70121219 + L1MB8 LINE L1 4717 4828 -1318 6 979 232 97 0 0 chr11 51722668 51722699 -70121157 - MT2A LTR ERVL -8 525 495 6 979 1550 211 18 86 chr11 51722778 51723173 -70120683 + ORR1D1 LTR MaLR 7 374 0 6 979 877 286 62 43 chr11 51723599 51723968 -70119888 - MT2A LTR ERVL -153 380 5 6 979 358 198 96 29 chr11 51723972 51724076 -70119780 + MTC-int LTR MaLR 946 1056 -202 6 979 387 0 0 0 chr11 51724148 51724191 -70119665 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 979 1197 180 0 19 chr11 51724227 51724436 -70119420 + B3 SINE B2 5 209 -7 6 979 351 298 8 15 chr11 51724521 51724628 -70119228 + PB1D7 SINE Alu 10 112 -5 6 979 1154 72 0 0 chr11 51724651 51724790 -70119066 + B1_Mus1 SINE Alu 2 140 -8 6 979 949 110 13 0 chr11 51724790 51724944 -70118912 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 6 979 246 294 14 14 chr11 51724958 51725027 -70118829 + ID2 SINE ID 6 74 -9 6 979 1207 259 72 26 chr11 51725046 51725462 -70118394 + L1MB8 LINE L1 5397 5831 -347 6 979 240 206 17 0 chr11 51725484 51725541 -70118315 - PB1D10 SINE Alu -6 114 55 6 979 29 47 0 0 chr11 51725543 51725586 -70118270 + AT_rich Low_complexity Low_complexity 1 43 0 6 979 627 221 39 23 chr11 51725596 51725726 -70118130 + B3 SINE B2 1 132 -84 6 979 219 246 34 34 chr11 51725696 51725755 -70118101 - B2_Mm1a SINE B2 -64 129 71 6 979 576 294 14 0 chr11 51725812 51725958 -70117898 + B1_Mur1 SINE Alu 2 149 0 6 979 649 247 116 21 chr11 51726452 51726642 -70117214 - MTEa LTR MaLR -9 370 163 6 979 2132 173 3 42 chr11 51726683 51727063 -70116793 - ORR1D1 LTR MaLR -9 365 1 6 979 386 273 141 0 chr11 51727063 51727162 -70116694 - MTEa LTR MaLR -261 118 6 6 979 207 0 0 0 chr11 51727710 51727733 -70116123 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 979 568 250 16 8 chr11 51727734 51727863 -70115993 - ID_B1 SINE B4 -17 207 78 6 979 1647 221 61 11 chr11 51728081 51728460 -70115396 - MTD LTR MaLR -14 405 8 6 979 538 196 19 9 chr11 51728581 51728689 -70115167 - B1_Mur1 SINE Alu -1 148 40 6 979 284 219 45 68 chr11 51728619 51728707 -70115149 - RLTR25B LTR ERVK -521 507 422 6 979 659 256 55 50 chr11 51728707 51728925 -70114931 - ID_B1 SINE B4 -2 222 4 6 979 240 150 25 0 chr11 51730475 51730515 -70113341 - MIR SINE MIR -113 149 109 6 979 322 256 7 157 chr11 51730630 51730684 -70113172 + MT2B2 LTR ERVL 128 158 -426 6 979 707 195 8 0 chr11 51730684 51730807 -70113049 + B1_Mus2 SINE Alu 3 126 -21 6 979 498 33 0 0 chr11 51730807 51730867 -70112989 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 979 264 306 102 0 chr11 51731066 51731164 -70112692 + ID_B1 SINE B4 69 176 -48 6 979 350 249 108 0 chr11 51731080 51731195 -70112661 + B1_Mur2 SINE Alu 6 128 -20 6 979 351 255 9 52 chr11 51731227 51731343 -70112513 + HAL1-3A_ME LINE L1 1968 2078 -780 6 979 964 157 7 13 chr11 51731346 51731495 -70112361 + B1_Mur1 SINE Alu 1 148 -1 6 979 202 189 214 54 chr11 51731959 51732015 -70111841 + MIR SINE MIR 87 151 -57 7 979 453 19 0 0 chr11 51732375 51732429 -70111427 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 979 353 71 36 0 chr11 51733006 51733062 -70110794 + (TCTG)n Simple_repeat Simple_repeat 4 61 0 7 979 771 244 81 19 chr11 51733085 51733294 -70110562 - ID_B1 SINE B4 -2 222 1 7 979 23 0 0 0 chr11 51734219 51734242 -70109614 + AT_rich Low_complexity Low_complexity 1 23 0 7 979 811 224 148 0 chr11 51734303 51734486 -70109370 - B3 SINE B2 -5 211 2 7 979 181 262 100 64 chr11 51734611 51734721 -70109135 - MIRc SINE MIR -108 160 47 7 979 932 248 45 45 chr11 51735322 51735546 -70108310 + ID_B1 SINE B4 1 224 0 7 979 1438 74 21 0 chr11 51735563 51735752 -70108104 + B2_Mm1t SINE B2 1 193 0 7 979 470 167 71 0 chr11 51736409 51736493 -70107363 - ID_B1 SINE B4 0 224 135 7 979 261 0 0 0 chr11 51736501 51736530 -70107326 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 979 474 221 99 81 chr11 51736604 51736776 -70107080 - B4A SINE B4 -94 198 24 7 979 529 62 12 24 chr11 51736811 51736894 -70106962 + (TATG)n Simple_repeat Simple_repeat 1 82 0 7 979 2355 148 21 3 chr11 51736906 51737280 -70106576 + ORR1C2 LTR MaLR 4 384 0 7 979 441 0 0 0 chr11 51737280 51737329 -70106527 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 979 297 0 0 0 chr11 51737331 51737364 -70106492 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 979 767 289 75 25 chr11 51737372 51737613 -70106243 - B4A SINE B4 -38 254 2 7 979 906 243 9 40 chr11 51737669 51737892 -70105964 + B3 SINE B2 1 216 0 7 979 352 279 0 103 chr11 51737897 51737947 -70105909 + B4 SINE B4 47 84 -208 7 979 461 153 0 0 chr11 51737947 51738019 -70105837 + B1_Mur4 SINE Alu 1 72 -78 7 979 698 177 6 114 chr11 51738062 51738228 -70105628 + B1_Mur3 SINE Alu 2 149 0 7 979 1048 206 20 5 chr11 51738283 51738483 -70105373 - B3 SINE B2 -13 203 1 7 979 764 240 17 88 chr11 51738484 51738722 -70105134 - ID_B1 SINE B4 -1 223 3 7 979 376 154 0 24 chr11 51738951 51739029 -70104827 + B1_Mur2 SINE Alu 44 115 -5 7 979 282 259 35 0 chr11 51739103 51739161 -70104695 + ID4_ SINE ID 15 74 -9 7 979 882 222 72 0 chr11 51739399 51739593 -70104263 + B3 SINE B2 1 208 -8 7 979 1324 94 39 0 chr11 51739665 51739846 -70104010 + B2_Mm1t SINE B2 2 189 -4 7 979 2951 158 83 7 chr11 51739994 51740201 -70103655 - RMER4B LTR ERVK -1 584 338 7 979 327 49 0 0 chr11 51740201 51740242 -70103614 + (TTCTCC)n Simple_repeat Simple_repeat 3 43 0 7 979 2951 158 83 7 chr11 51740242 51740577 -70103279 - RMER4B LTR ERVK -248 337 2 7 979 1303 73 90 0 chr11 51740942 51741120 -70102736 - B2_Mm2 SINE B2 0 195 2 7 979 230 290 175 31 chr11 51741201 51741238 -70102618 - B2_Mm1a SINE B2 -6 187 5 7 979 580 260 0 0 chr11 51741238 51741361 -70102495 - RSINE1 SINE B4 -37 128 6 7 979 836 221 29 18 chr11 51741418 51741617 -70102239 - B3A SINE B2 -14 202 3 7 979 261 265 197 0 chr11 51741621 51741753 -70102103 - L1M3 LINE L1 -1135 5005 4848 7 979 451 242 33 0 chr11 51741763 51741854 -70102002 + PB1D7 SINE Alu 7 100 -20 7 979 189 107 0 0 chr11 51741858 51741886 -70101970 + (CAA)n Simple_repeat Simple_repeat 2 29 0 7 979 1126 298 81 9 chr11 51741903 51742235 -70101621 - ORR1E LTR MaLR -3 356 1 7 979 246 330 66 42 chr11 51742258 51742430 -70101426 - L1M3 LINE L1 -1297 4843 4664 7 979 995 261 46 137 chr11 51742430 51742847 -70101009 + MTE2a LTR MaLR 1 379 0 7 979 246 330 66 42 chr11 51742847 51742886 -70100970 - L1M3 LINE L1 -1477 4663 4627 7 979 708 275 18 0 chr11 51742888 51743059 -70100797 - B3 SINE B2 -3 213 40 7 979 189 74 0 0 chr11 51743119 51743146 -70100710 + (TTG)n Simple_repeat Simple_repeat 1 27 0 7 979 256 292 82 20 chr11 51743146 51743244 -70100612 - PB1D10 SINE Alu -13 104 1 7 979 556 14 14 14 chr11 51743286 51743360 -70100496 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 7 979 897 149 0 0 chr11 51743360 51743494 -70100362 - B1_Mur4 SINE Alu -11 139 6 7 979 727 321 58 78 chr11 51743846 51744207 -70099649 - ORR1E LTR MaLR -3 356 3 7 979 241 269 29 15 chr11 51744320 51744388 -70099468 + ID4 SINE ID 4 72 -11 7 979 423 0 0 0 chr11 51744396 51744443 -70099413 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 979 432 0 0 0 chr11 51744520 51744568 -70099288 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 979 231 291 143 18 chr11 51744814 51744830 -70099026 + ZP3AR Satellite Satellite 27 87 -125 7 979 311 256 0 0 chr11 51744830 51744912 -70098944 + ID4 SINE ID 1 82 -1 7 979 231 291 143 18 chr11 51744912 51744926 -70098930 + ZP3AR Satellite Satellite 88 152 -60 7 979 195 129 0 0 chr11 51744997 51745028 -70098828 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 7 979 639 114 209 9 chr11 51745040 51745155 -70098701 - B1_Mur1 SINE Alu -10 139 2 7 979 808 251 136 26 chr11 51745197 51745549 -70098307 - Lx8 LINE L1 -10 7463 7073 7 979 3037 30 0 76 chr11 51745593 51745988 -70097868 + RLTR10B2 LTR ERVK 1 365 0 7 979 230 367 0 0 chr11 51745996 51746056 -70097800 - RSINE1 SINE B4 -13 152 93 7 979 966 137 13 33 chr11 51746090 51746241 -70097615 - B1_Mur3 SINE Alu 0 149 2 7 979 506 232 11 0 chr11 51746257 51746352 -70097504 - RSINE1 SINE B4 -67 98 3 7 979 423 0 0 0 chr11 51747127 51747174 -70096682 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 979 184 286 0 31 chr11 51747505 51747570 -70096286 + L2b LINE L2 3076 3138 -237 7 979 306 0 0 0 chr11 51748521 51748555 -70095301 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 7 979 884 298 43 34 chr11 51748575 51748808 -70095048 + B4A SINE B4 40 274 -18 7 979 209 98 24 0 chr11 51748829 51748870 -70094986 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 979 206 175 0 24 chr11 51750164 51750205 -70093651 + CT-rich Low_complexity Low_complexity 2 41 0 7 979 881 216 51 31 chr11 51750209 51750405 -70093451 - ID_B1 SINE B4 -20 204 5 7 979 842 241 0 0 chr11 51751331 51751489 -70092367 - RSINE1 SINE B4 -6 159 2 7 979 432 0 0 0 chr11 51751597 51751645 -70092211 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 979 661 269 119 90 chr11 51751732 51752001 -70091855 + MLT1J LTR MaLR 1 309 -203 7 979 888 314 109 70 chr11 51752024 51752511 -70091345 + MLT1F LTR MaLR 1 506 -42 7 979 227 316 38 0 chr11 51752520 51752599 -70091257 - ID4 SINE ID 0 83 2 7 979 367 219 12 47 chr11 51752606 51752692 -70091164 - ID_B1 SINE B4 -12 212 130 7 979 282 267 196 19 chr11 51752692 51752713 -70091143 - B1F SINE Alu -12 137 12 7 979 306 156 0 0 chr11 51752713 51752777 -70091079 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 979 224 283 10 115 chr11 51752800 51752904 -70090952 - RSINE1 SINE B4 0 165 73 7 979 228 140 18 91 chr11 51752970 51753025 -70090831 - B1_Mur4 SINE Alu -10 140 90 7 979 436 219 0 0 chr11 51753104 51753177 -70090679 - B4A SINE B4 -216 76 4 7 979 323 356 0 0 chr11 51753473 51753563 -70090293 + PB1D10 SINE Alu 21 110 -7 7 979 988 214 55 5 chr11 51753566 51753768 -70090088 + ID_B1 SINE B4 5 216 -8 7 979 325 347 0 10 chr11 51753779 51753878 -70089978 + B4A SINE B4 1 98 -194 7 979 621 214 54 54 chr11 51754497 51754645 -70089211 + B1_Mur1 SINE Alu 1 148 -1 7 979 222 202 24 71 chr11 51754693 51754778 -70089078 + T-rich Low_complexity Low_complexity 4 84 0 7 979 1248 35 7 0 chr11 51754779 51754924 -70088932 - B1_Mm SINE Alu -1 146 1 7 979 1096 215 10 14 chr11 51754936 51755144 -70088712 - B3 SINE B2 -9 207 1 7 979 25 0 0 28 chr11 51755147 51755164 -70088692 + AT_rich Low_complexity Low_complexity 1 17 0 7 979 1301 52 75 6 chr11 51755164 51755337 -70088519 - B2_Mm2 SINE B2 -10 185 1 7 979 25 0 0 28 chr11 51755337 51755355 -70088501 + AT_rich Low_complexity Low_complexity 1 18 0 7 979 761 204 42 36 chr11 51755686 51755854 -70088002 - B3A SINE B2 -26 172 4 7 979 392 167 128 23 chr11 51755864 51755950 -70087906 - ID_B1 SINE B4 -1 223 129 7 979 393 158 0 0 chr11 51757367 51757449 -70086407 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 979 476 331 32 93 chr11 51757450 51757760 -70086096 - B4A SINE B4 -1 291 1 7 979 236 295 51 31 chr11 51757818 51757839 -70086017 - ID_B1 SINE B4 -16 208 109 7 979 327 289 0 13 chr11 51757839 51757916 -70085940 - PB1D10 SINE Alu -14 103 28 7 979 207 0 0 0 chr11 51757924 51757947 -70085909 + (T)n Simple_repeat Simple_repeat 1 23 0 7 979 350 230 37 74 chr11 51757952 51758060 -70085796 + MT2B LTR ERVL 154 257 -344 7 979 622 194 44 58 chr11 51757972 51758109 -70085747 + B1_Mm SINE Alu 13 147 0 7 979 270 292 0 0 chr11 51758110 51758182 -70085674 + A-rich Low_complexity Low_complexity 2 73 0 7 979 222 182 14 70 chr11 51758284 51758355 -70085501 - PB1D10 SINE Alu -2 115 49 7 979 263 136 14 181 chr11 51758309 51758381 -70085475 - MT2B2 LTR ERVL -334 250 191 7 979 590 222 126 0 chr11 51758345 51758480 -70085376 - B3 SINE B2 -63 153 2 7 979 384 269 21 11 chr11 51758487 51758581 -70085275 - PB1D7 SINE Alu -5 115 21 7 979 468 173 55 139 chr11 51760280 51760417 -70083439 + B1_Mur1 SINE Alu 1 140 -9 7 979 195 100 0 0 chr11 51760418 51760448 -70083408 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 979 736 202 164 61 chr11 51760491 51760754 -70083102 - B4 SINE B4 -2 290 1 8 979 705 162 113 23 chr11 51760788 51760921 -70082935 + B1_Mur4 SINE Alu 6 150 0 8 979 230 311 15 98 chr11 51761336 51761468 -70082388 + B1_Mus1 SINE Alu 27 147 -1 8 979 870 127 16 0 chr11 51761806 51761932 -70081924 + B1_Mur2 SINE Alu 5 132 -17 8 979 649 88 20 0 chr11 51761939 51762041 -70081815 + (GGGAGA)n Simple_repeat Simple_repeat 1 104 0 8 979 828 218 96 10 chr11 51762160 51762359 -70081497 + ID_B1 SINE B4 8 223 -1 8 979 489 76 0 0 chr11 51762370 51762436 -70081420 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 8 979 242 250 0 0 chr11 51762838 51762890 -70080966 + G-rich Low_complexity Low_complexity 6 57 0 8 979 248 298 37 95 chr11 51762910 51763151 -70080705 + HAL1 LINE L1 560 786 -1721 8 979 482 332 19 72 chr11 51763704 51763912 -70079944 + B3 SINE B2 7 203 -13 8 979 216 214 0 0 chr11 51763984 51764040 -70079816 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 979 588 162 53 26 chr11 51764099 51764213 -70079643 + PB1D10 SINE Alu 1 117 0 8 979 1141 43 65 0 chr11 51764279 51764418 -70079438 + B1_Mus1 SINE Alu 1 148 0 8 979 431 229 105 0 chr11 51764801 51764906 -70078950 + B1_Mur4 SINE Alu 1 116 -34 8 979 480 215 0 0 chr11 51765139 51765246 -70078610 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 8 979 227 300 33 0 chr11 51765275 51765335 -70078521 - ID4_ SINE ID -8 75 14 8 979 677 296 162 45 chr11 51765586 51765789 -70078067 + RMER5 LTR ERV1 40 244 -290 8 979 620 186 26 0 chr11 51765789 51765902 -70077954 + PB1D10 SINE Alu 2 117 0 8 979 677 296 162 45 chr11 51765902 51766141 -70077715 + RMER5 LTR ERV1 245 534 0 8 979 321 129 15 46 chr11 51766218 51766283 -70077573 - MER53 DNA hAT -91 102 40 8 979 738 175 0 0 chr11 51766368 51766488 -70077368 + B1_Mur2 SINE Alu 17 136 -13 8 979 180 0 0 0 chr11 51766505 51766525 -70077331 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 8 979 591 176 0 115 chr11 51766532 51766654 -70077202 + PB1D9 SINE Alu 1 108 -12 8 979 195 42 0 0 chr11 51766668 51766692 -70077164 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 8 979 318 252 90 10 chr11 51766695 51766795 -70077061 + HAL1-3A_ME LINE L1 2286 2393 -465 8 979 402 39 0 0 chr11 51767499 51767551 -70076305 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 979 948 177 0 0 chr11 51767631 51767778 -70076078 + B1_Mur4 SINE Alu 2 148 -2 8 979 192 152 0 0 chr11 51767816 51767849 -70076007 + A-rich Low_complexity Low_complexity 1 33 0 8 979 1128 128 0 0 chr11 51767862 51768041 -70075815 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8 979 183 80 0 0 chr11 51768186 51768211 -70075645 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 8 979 1006 123 7 0 chr11 51768236 51768382 -70075474 - B1_Mus1 SINE Alu -1 147 1 8 979 763 178 118 0 chr11 51768395 51768547 -70075309 - B3 SINE B2 -12 204 35 8 979 274 281 0 58 chr11 51768773 51768860 -70074996 + PB1D10 SINE Alu 11 92 -25 8 979 212 196 54 0 chr11 51769124 51769180 -70074676 + B1F1 SINE Alu 91 149 0 8 979 232 288 145 36 chr11 51769179 51769262 -70074594 + B1_Mm SINE Alu 1 92 -55 8 979 237 98 0 0 chr11 51769297 51769338 -70074518 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 8 979 532 129 20 0 chr11 51769507 51769608 -70074248 + (GA)n Simple_repeat Simple_repeat 2 104 0 8 979 206 330 55 33 chr11 51769743 51769834 -70074022 - L3 LINE CR1 -450 4039 3947 8 979 733 244 66 20 chr11 51770220 51770417 -70073439 + B3 SINE B2 5 210 -6 8 979 22 35 0 0 chr11 51770421 51770450 -70073406 + AT_rich Low_complexity Low_complexity 1 29 0 8 979 1273 119 0 6 chr11 51770571 51770749 -70073107 - B2_Mm2 SINE B2 -18 177 1 8 979 21 95 0 0 chr11 51771091 51771154 -70072702 + AT_rich Low_complexity Low_complexity 1 63 0 8 979 371 21 21 0 chr11 51771161 51771209 -70072647 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 979 467 303 63 70 chr11 51771218 51771506 -70072350 - B4 SINE B4 -18 274 2 8 979 279 215 242 15 chr11 51771714 51771773 -70072083 + PB1D10 SINE Alu 13 86 -31 8 979 510 176 0 0 chr11 51771773 51771858 -70071998 + ORR1C2 LTR MaLR 1 85 -299 8 979 434 96 0 0 chr11 51771858 51771931 -70071925 + L1_Mus2 LINE L1 6493 6565 -1 8 979 312 91 0 0 chr11 51771943 51771987 -70071869 + (GAGAA)n Simple_repeat Simple_repeat 4 47 0 8 979 1308 181 91 11 chr11 51771987 51772086 -70071770 + ORR1C2 LTR MaLR 77 191 -193 8 979 351 0 0 0 chr11 51772086 51772125 -70071731 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 979 1308 181 91 11 chr11 51772125 51772310 -70071546 + ORR1C2 LTR MaLR 192 384 0 8 979 315 331 53 8 chr11 51772329 51772460 -70071396 + ID_B1 SINE B4 67 203 -21 8 979 306 231 46 0 chr11 51772404 51772469 -70071387 + MTC LTR MaLR 141 208 -213 8 979 994 156 196 0 chr11 51772469 51772648 -70071208 + B3 SINE B2 3 216 0 8 979 534 103 0 0 chr11 51772657 51772735 -70071121 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 8 979 1574 120 4 4 chr11 51772735 51772961 -70070895 + MTC LTR MaLR 196 421 0 8 122 297 128 0 0 chr11 51773412 51773459 -70070397 + (TGG)n Simple_repeat Simple_repeat 3 49 0 8 980 759 296 68 87 chr11 51773540 51773690 -70070166 + ORR1E LTR MaLR 55 211 -148 8 980 180 0 0 0 chr11 51773690 51773710 -70070146 + (CCA)n Simple_repeat Simple_repeat 3 22 0 8 980 759 296 68 87 chr11 51773710 51773870 -70069986 + ORR1E LTR MaLR 212 359 0 8 980 1515 53 37 0 chr11 51774003 51774191 -70069665 - B2_Mm2 SINE B2 0 195 1 8 980 382 182 0 29 chr11 51774274 51774376 -70069480 + CT-rich Low_complexity Low_complexity 1 99 0 8 980 369 0 0 0 chr11 51774955 51774996 -70068860 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 980 924 134 0 7 chr11 51775012 51775147 -70068709 - B1_Mur2 SINE Alu -1 148 15 8 980 448 262 7 84 chr11 51775018 51775172 -70068684 - B4A SINE B4 -71 221 80 8 980 297 0 0 0 chr11 51775201 51775234 -70068622 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 980 475 279 22 44 chr11 51775235 51775370 -70068486 - RSINE1 SINE B4 -24 141 10 8 980 229 233 66 40 chr11 51776044 51776120 -70067736 + L1M7 LINE L1 1475 1552 -4666 8 980 661 182 32 16 chr11 51776142 51776265 -70067591 + B1_Mur1 SINE Alu 25 149 0 8 980 536 232 26 18 chr11 51776283 51776397 -70067459 + ID_B1 SINE B4 104 218 -6 8 980 472 268 0 80 chr11 51776414 51776576 -70067280 + B1F2 SINE Alu 1 149 0 8 980 710 283 11 5 chr11 51776605 51776790 -70067066 + B3 SINE B2 31 216 0 8 980 741 189 0 42 chr11 51776796 51776940 -70066916 - B1_Mur2 SINE Alu 0 149 12 8 980 403 308 20 40 chr11 51776805 51776957 -70066899 - ID_B1 SINE B4 -3 221 73 8 980 623 183 224 22 chr11 51776983 51777162 -70066694 + B3 SINE B2 2 216 0 8 980 209 170 0 60 chr11 51777363 51777413 -70066443 + GA-rich Low_complexity Low_complexity 1 47 0 8 980 217 51 0 49 chr11 51777413 51777454 -70066402 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 980 787 271 34 12 chr11 51777470 51777673 -70066183 + ID_B1 SINE B4 40 245 -47 8 980 520 231 26 0 chr11 51777721 51777838 -70066018 - B1_Mur1 SINE Alu -8 141 22 8 980 452 264 0 0 chr11 51777883 51777989 -70065867 + U6 snRNA snRNA 1 106 -1 8 980 2287 70 86 0 chr11 51778288 51778589 -70065267 - ORR1A2 LTR MaLR 0 327 1 8 980 383 307 78 8 chr11 51779168 51779296 -70064560 + ID_B1 SINE B4 81 217 -7 8 980 347 298 0 0 chr11 51779327 51779421 -70064435 + PB1D10 SINE Alu 17 110 -7 8 980 343 292 63 49 chr11 51779431 51779636 -70064220 + L1M5 LINE L1 4457 4664 -1482 8 980 602 191 0 0 chr11 51779745 51779855 -70064001 - B3 SINE B2 -106 110 1 8 980 363 306 0 32 chr11 51779932 51780057 -70063799 - PB1 SINE Alu -5 122 2 8 980 513 200 0 40 chr11 51780634 51780733 -70063123 - RSINE1 SINE B4 0 165 71 8 980 1681 21 0 10 chr11 51782055 51782249 -70061607 - B2_Mm1a SINE B2 0 193 2 8 980 278 276 19 28 chr11 51782253 51782361 -70061495 - ID_B1 SINE B4 0 224 118 8 980 239 276 12 50 chr11 51782490 51782570 -70061286 - ID4_ SINE ID -2 81 5 8 980 818 233 58 15 chr11 51782902 51783107 -70060749 - B3 SINE B2 -2 214 1 8 980 506 240 243 12 chr11 51783130 51783303 -70060553 - B3 SINE B2 -3 213 1 8 980 413 289 109 17 chr11 51784100 51784325 -70059531 + Lx8 LINE L1 5610 5883 -1590 8 980 228 122 19 75 chr11 51784564 51784617 -70059239 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 8 980 242 231 0 0 chr11 51784617 51784668 -70059188 - B1F SINE Alu -98 51 1 8 980 479 270 11 97 chr11 51785642 51785818 -70058038 + RSINE1 SINE B4 3 163 -2 8 980 704 191 28 0 chr11 51786490 51786631 -70057225 + B1_Mur2 SINE Alu 5 149 0 8 980 253 230 46 74 chr11 51786862 51786970 -70056886 + MT2B2 LTR ERVL 137 241 -343 8 980 471 174 12 0 chr11 51786888 51786974 -70056882 + ID_B1 SINE B4 82 168 -56 8 980 301 282 63 9 chr11 51786974 51786999 -70056857 + B1_Mur2 SINE Alu 1 117 -32 8 980 873 97 20 14 chr11 51787016 51787154 -70056702 + B2_Mm2 SINE B2 48 187 -8 8 980 204 40 0 0 chr11 51787154 51787179 -70056677 + (GA)n Simple_repeat Simple_repeat 2 26 0 8 980 1200 174 15 10 chr11 51787282 51787485 -70056371 + B3 SINE B2 1 204 -12 8 980 918 273 98 42 chr11 51787486 51787964 -70055892 - RLTR16 LTR ERVK 0 505 1 8 980 2158 133 68 17 chr11 51787964 51788376 -70055480 - MYSERV16_I-int LTR ERVK 0 2326 1894 8 980 368 108 0 44 chr11 51788403 51788418 -70055438 + A-rich Low_complexity Low_complexity 1 13 0 8 980 1156 75 0 0 chr11 51788418 51788564 -70055292 + B1_Mm SINE Alu 2 147 0 9 980 368 108 0 44 chr11 51788564 51788616 -70055240 + A-rich Low_complexity Low_complexity 14 65 0 9 980 428 229 0 0 chr11 51790034 51790117 -70053739 + ID4_ SINE ID 1 83 0 9 980 682 165 46 23 chr11 51792386 51792516 -70051340 - B1_Mur1 SINE Alu -2 147 15 9 980 371 286 19 9 chr11 51792725 51792831 -70051025 + ID_B1 SINE B4 25 131 -93 9 980 1105 287 86 17 chr11 51792856 51793334 -70050522 - RLTR20A2 LTR ERVK -64 514 4 9 980 4283 152 94 20 chr11 51793338 51794275 -70049581 - MYSERV16_I-int LTR ERVK -2 2324 1319 9 980 540 276 48 33 chr11 51794281 51794551 -70049305 + RLTR20A1 LTR ERVK 162 551 0 9 980 362 204 101 10 chr11 51794551 51794650 -70049206 + ID_B1 SINE B4 116 223 -1 9 980 940 222 10 5 chr11 51794653 51794848 -70049008 + B3 SINE B2 1 196 -20 9 980 327 260 100 0 chr11 51794846 51794946 -70048910 + B1F SINE Alu 28 137 -12 9 980 405 0 0 0 chr11 51794949 51794994 -70048862 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 980 1363 58 10 55 chr11 51795443 51795643 -70048213 - B2_Mm1a SINE B2 -2 191 1 9 980 243 0 0 0 chr11 51796046 51796073 -70047783 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 980 242 193 0 34 chr11 51796078 51796137 -70047719 - tRNA-Ala-GCA tRNA tRNA -14 61 5 9 980 425 252 17 51 chr11 51796953 51797070 -70046786 - PB1D7 SINE Alu -3 117 5 9 980 792 207 52 0 chr11 51797096 51797270 -70046586 - B3A SINE B2 -15 183 1 9 980 576 208 50 38 chr11 51797503 51797663 -70046193 - RSINE1 SINE B4 0 165 4 9 980 191 211 132 0 chr11 51797946 51798022 -70045834 + MIR SINE MIR 53 138 -124 9 980 257 234 147 11 chr11 51798558 51798653 -70045203 - B1F1 SINE Alu -41 108 1 9 980 613 262 43 5 chr11 51798664 51798852 -70045004 - B3A SINE B2 -2 196 2 9 980 270 233 0 0 chr11 51800702 51800762 -70043094 - B1_Mus1 SINE Alu -88 60 1 9 980 218 293 29 63 chr11 51800762 51800849 -70043007 - B4 SINE B4 -137 140 3 9 980 1377 88 5 20 chr11 51800979 51801175 -70042681 + B2_Mm1a SINE B2 1 193 0 9 980 25 0 0 0 chr11 51801186 51801211 -70042645 + AT_rich Low_complexity Low_complexity 1 25 0 9 980 1172 62 14 0 chr11 51801837 51801982 -70041874 + B1_Mus2 SINE Alu 1 147 0 9 980 358 171 40 0 chr11 51802387 51802463 -70041393 + ID4_ SINE ID 1 79 -4 9 980 277 257 65 39 chr11 51802650 51802727 -70041129 + ID4 SINE ID 3 81 -2 9 980 586 151 9 9 chr11 51802814 51802921 -70040935 - B1_Mur1 SINE Alu 0 149 43 9 980 32 26 0 0 chr11 51802957 51802996 -70040860 + AT_rich Low_complexity Low_complexity 1 39 0 9 980 257 233 112 37 chr11 51803666 51803773 -70040083 + L1M4 LINE L1 5723 5837 -341 9 980 534 231 51 0 chr11 51803996 51804113 -70039743 + B1_Mus1 SINE Alu 7 129 -19 9 980 360 260 159 6 chr11 51804177 51804359 -70039497 + ID_B1 SINE B4 1 210 -14 9 980 556 290 54 20 chr11 51804382 51804530 -70039326 - RSINE1 SINE B4 -1 164 12 9 980 234 219 136 68 chr11 51804532 51804620 -70039236 - ID_B1 SINE B4 -1 223 130 9 980 1647 31 0 20 chr11 51805203 51805400 -70038456 + B2_Mm1t SINE B2 1 193 0 9 980 461 281 0 68 chr11 51805479 51805655 -70038201 - RSINE1 SINE B4 0 165 2 9 980 1242 48 0 0 chr11 51805717 51805864 -70037992 + B1_Mus2 SINE Alu 1 147 0 9 980 239 191 0 0 chr11 51806338 51806380 -70037476 + ID2 SINE ID 4 45 -38 9 980 222 214 17 67 chr11 51806380 51806398 -70037458 + ID SINE ID 4 60 -164 9 980 317 207 161 0 chr11 51806416 51806503 -70037353 + PB1 SINE Alu 24 124 -3 9 980 795 127 17 0 chr11 51806662 51806780 -70037076 - PB1D9 SINE Alu 0 120 1 9 980 647 210 119 30 chr11 51806780 51807016 -70036840 - Charlie1a DNA MER1_type -189 1266 1010 9 980 277 272 23 136 chr11 51807417 51807549 -70036307 - Charlie1a DNA MER1_type -1224 231 116 9 980 306 205 66 33 chr11 51807758 51807849 -70036007 + PB1D9 SINE Alu 26 119 -1 9 980 1167 68 0 0 chr11 51808016 51808162 -70035694 - B1_Mus2 SINE Alu 0 147 2 9 980 290 236 31 92 chr11 51809166 51809264 -70034592 + MT2B LTR ERVL 166 257 -344 9 980 713 129 30 8 chr11 51809176 51809309 -70034547 + B1_Mur4 SINE Alu 15 150 0 9 980 310 247 42 21 chr11 51809344 51809467 -70034389 + B1F2 SINE Alu 5 125 -2 9 980 286 281 12 24 chr11 51809530 51809614 -70034242 - B1F SINE Alu -61 88 6 9 980 393 245 0 48 chr11 51809616 51809719 -70034137 - PB1D10 SINE Alu 0 117 20 9 980 236 190 29 100 chr11 51809718 51809788 -70034068 - ID4_ SINE ID -18 65 1 9 980 229 324 0 14 chr11 51810345 51810414 -70033442 + B4A SINE B4 81 148 -144 9 980 235 267 0 0 chr11 51810360 51810423 -70033433 + B1F SINE Alu 10 72 -45 9 980 256 269 0 0 chr11 51810841 51810908 -70032948 - ID4 SINE ID -14 69 3 9 980 421 252 25 34 chr11 51810956 51811075 -70032781 + PB1 SINE Alu 1 118 -9 9 980 571 138 163 0 chr11 51811706 51811809 -70032047 + B1_Mus1 SINE Alu 6 118 -30 9 980 191 61 30 0 chr11 51811809 51811842 -70032014 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 9 980 571 138 163 0 chr11 51811842 51811861 -70031995 + B1_Mus1 SINE Alu 119 147 -1 9 980 222 100 0 0 chr11 51812404 51812427 -70031429 + (A)n Simple_repeat Simple_repeat 1 23 0 9 980 1082 68 13 27 chr11 51812427 51812577 -70031279 + B1_Mus1 SINE Alu 1 148 0 9 980 222 100 0 0 chr11 51812577 51812593 -70031263 + (A)n Simple_repeat Simple_repeat 1 16 0 9 980 23 33 0 0 chr11 51814031 51814061 -70029795 + GC_rich Low_complexity Low_complexity 1 30 0 9 980 271 289 107 8 chr11 51815340 51815462 -70028394 + ID_B1 SINE B4 80 213 -11 9 980 394 159 27 4 chr11 51816080 51816168 -70027688 - B1_Mur2 SINE Alu -7 113 26 9 980 478 111 111 0 chr11 51816393 51816483 -70027373 - PB1D9 SINE Alu -20 100 1 9 980 1238 120 0 15 chr11 51816495 51816690 -70027166 - B2_Mm2 SINE B2 -2 193 2 9 980 446 273 66 0 chr11 51816775 51816896 -70026960 - RSINE1 SINE B4 -33 132 4 9 980 436 217 142 37 chr11 51817090 51817224 -70026632 + B1_Mur1 SINE Alu 2 149 0 9 980 206 62 0 30 chr11 51817597 51817630 -70026226 + (CCCCCA)n Simple_repeat Simple_repeat 5 36 0 9 980 785 192 7 20 chr11 51819030 51819179 -70024677 + B1_Mus1 SINE Alu 2 148 0 9 980 669 237 70 17 chr11 51819249 51819421 -70024435 + B3A SINE B2 2 182 -16 9 980 213 204 82 0 chr11 51820772 51820821 -70023035 - ID_B1 SINE B4 -87 137 85 9 980 344 339 130 8 chr11 51820850 51820981 -70022875 - RSINE1 SINE B4 -6 159 13 9 980 484 202 11 0 chr11 51820977 51821066 -70022790 - ID_B1 SINE B4 -134 90 1 9 980 1358 99 11 0 chr11 51821097 51821288 -70022568 + B2_Mm1t SINE B2 1 193 0 9 980 482 161 0 2 chr11 51821360 51821450 -70022406 - B1_Mur2 SINE Alu -10 139 49 9 980 664 187 36 29 chr11 51821495 51821633 -70022223 - B1_Mur2 SINE Alu -1 148 10 9 980 892 181 56 79 chr11 51821735 51821887 -70021969 - B3 SINE B2 -5 211 57 9 980 356 309 53 93 chr11 51821887 51822112 -70021744 + B3 SINE B2 1 216 0 9 980 892 181 56 79 chr11 51822112 51822175 -70021681 - B3 SINE B2 -160 56 1 9 980 507 219 61 23 chr11 51822180 51822311 -70021545 - B1F SINE Alu -5 144 9 9 980 439 154 52 12 chr11 51822544 51822656 -70021200 - B1_Mus2 SINE Alu -20 129 1 9 980 1022 29 29 0 chr11 51822739 51822878 -70020978 - B1_Mus1 SINE Alu 0 148 6 9 980 606 151 203 14 chr11 51822891 51823039 -70020817 + B3 SINE B2 13 188 -28 9 980 495 214 0 0 chr11 51823071 51823160 -70020696 - B3A SINE B2 -108 90 2 9 980 336 234 133 41 chr11 51823185 51823283 -70020573 - PB1 SINE Alu -2 125 19 9 980 803 249 26 16 chr11 51823525 51823717 -70020139 + B3 SINE B2 6 199 -17 9 980 274 360 14 48 chr11 51823780 51823926 -70019930 + ID_B1 SINE B4 36 176 -48 9 980 480 241 9 0 chr11 51823840 51823948 -70019908 + PB1D10 SINE Alu 9 117 0 9 980 640 136 0 43 chr11 51823988 51824126 -70019730 - BC1_Mm scRNA scRNA -20 132 1 9 980 525 16 0 0 chr11 51824126 51824188 -70019668 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 9 980 636 218 23 0 chr11 51824188 51824321 -70019535 - B1F2 SINE Alu -13 136 1 9 980 449 262 40 0 chr11 51825695 51825821 -70018035 - B1_Mur2 SINE Alu 0 149 19 9 980 489 198 121 0 chr11 51825823 51825939 -70017917 + B1_Mus1 SINE Alu 18 147 -1 9 980 300 70 0 0 chr11 51826097 51826140 -70017716 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 9 980 333 160 93 0 chr11 51826142 51826217 -70017639 - L1M4 LINE L1 -5468 1074 993 9 980 259 268 120 0 chr11 51826534 51826679 -70017177 + L1MA8 LINE L1 4189 4367 -1779 9 980 1276 69 16 16 chr11 51826682 51826851 -70017005 + B2_Mm2 SINE B2 2 172 -23 9 980 3978 106 14 5 chr11 51826851 51827439 -70016417 + Lx3A LINE L1 6388 6980 -1 9 980 1276 69 16 16 chr11 51827439 51827460 -70016396 + B2_Mm2 SINE B2 173 192 -3 9 980 743 239 132 0 chr11 51827483 51827680 -70016176 + ID_B1 SINE B4 2 224 0 9 980 379 201 89 57 chr11 51828139 51828321 -70015535 + L1MA8 LINE L1 5272 5452 -839 9 980 344 297 89 23 chr11 51828444 51828658 -70015198 + L1MA8 LINE L1 5647 5874 -417 9 980 671 179 15 7 chr11 51828791 51828926 -70014930 - B1_Mur4 SINE Alu 0 150 15 9 980 283 243 0 177 chr11 51828926 51829101 -70014755 - RMER6A LTR ERVK 0 756 613 9 980 262 242 0 177 chr11 51829167 51829372 -70014484 - RMER6A LTR ERVK -31 725 613 9 980 2217 159 55 52 chr11 51829437 51829979 -70013877 - RMER6A LTR ERVK -31 725 182 9 980 228 264 146 0 chr11 51830021 51830131 -70013725 + L1MA8 LINE L1 6055 6180 -111 9 980 441 0 0 0 chr11 51830174 51830223 -70013633 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 980 618 218 48 0 chr11 51830224 51830348 -70013508 - B1_Mus2 SINE Alu -16 131 2 1 980 28 48 0 0 chr11 51830391 51830433 -70013423 + AT_rich Low_complexity Low_complexity 1 42 0 1 980 912 139 41 7 chr11 51830433 51830578 -70013278 + B1_Mur4 SINE Alu 1 150 0 1 980 1396 73 5 30 chr11 51830642 51830840 -70013016 + B2_Mm2 SINE B2 2 194 -1 1 980 206 224 53 0 chr11 51830864 51830940 -70012916 - L2 LINE L2 -1234 2185 2106 1 980 1124 51 177 0 chr11 51830948 51831106 -70012750 + B2_Mm1a SINE B2 2 187 -6 1 980 234 0 0 0 chr11 51831129 51831155 -70012701 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 980 336 253 0 24 chr11 51831180 51831265 -70012591 + ID_B1 SINE B4 137 219 -5 1 980 677 225 25 12 chr11 51832259 51832421 -70011435 - RSINE1 SINE B4 0 165 2 1 980 1338 109 16 10 chr11 51832474 51832668 -70011188 + B2_Mm2 SINE B2 1 195 0 1 980 527 218 39 39 chr11 51832851 51832980 -70010876 - B1_Mur1 SINE Alu -8 141 13 1 980 230 303 16 114 chr11 51832879 51833002 -70010854 - MT2B LTR ERVL -336 265 155 1 980 1213 198 16 43 chr11 51833884 51834147 -70009709 - Lx5 LINE L1 -5 7053 6742 1 980 1110 61 0 26 chr11 51834217 51834368 -70009488 + B1_Mus1 SINE Alu 2 148 0 1 980 762 207 0 0 chr11 51834395 51834559 -70009297 + CT-rich Low_complexity Low_complexity 3 166 0 1 980 278 188 238 0 chr11 51834569 51834649 -70009207 - MTE2a LTR MaLR -280 99 1 1 980 781 165 133 0 chr11 51834891 51835049 -70008807 - B3 SINE B2 -36 180 2 1 980 276 30 0 0 chr11 51835275 51835308 -70008548 + (T)n Simple_repeat Simple_repeat 1 33 0 1 980 1233 41 0 0 chr11 51835308 51835455 -70008401 - B1_Mm SINE Alu 0 147 1 1 980 721 175 260 0 chr11 51835462 51835639 -70008217 + URR1A DNA MER1_type 3 225 -1 1 980 647 148 19 0 chr11 51835735 51835843 -70008013 + B1_Mus1 SINE Alu 27 136 -12 1 980 287 325 0 0 chr11 51836004 51836084 -70007772 - ID4_ SINE ID -1 82 3 1 980 234 291 0 0 chr11 51836979 51837034 -70006822 + ID4_ SINE ID 10 64 -19 1 980 464 263 82 48 chr11 51837432 51837640 -70006216 - B3 SINE B2 0 216 2 1 980 588 278 42 75 chr11 51837720 51837961 -70005895 + B4A SINE B4 41 273 -19 1 980 284 270 54 74 chr11 51838243 51838391 -70005465 + RSINE1 SINE B4 2 146 -19 1 980 558 0 0 0 chr11 51838720 51838782 -70005074 + (TTTTA)n Simple_repeat Simple_repeat 5 66 0 1 980 275 250 42 0 chr11 51838782 51838854 -70005002 - B3 SINE B2 -16 200 126 1 980 1123 89 0 0 chr11 51839002 51839148 -70004708 + B1_Mus2 SINE Alu 1 146 -1 1 980 364 352 23 0 chr11 51839718 51839846 -70004010 - B3A SINE B2 -11 187 57 1 980 227 213 85 0 chr11 51840037 51840084 -70003772 + PB1D10 SINE Alu 2 52 -65 1 980 487 305 50 0 chr11 51841047 51841188 -70002668 - B1F1 SINE Alu -1 148 1 1 980 1245 41 0 0 chr11 51841243 51841389 -70002467 + B1_Mm SINE Alu 2 147 0 1 980 504 234 96 1 chr11 51841436 51841576 -70002280 - B3A SINE B2 -50 166 15 1 980 207 0 0 0 chr11 51841922 51841945 -70001911 + (T)n Simple_repeat Simple_repeat 1 23 0 1 980 1236 41 0 0 chr11 51841945 51842091 -70001765 - B1_Mus2 SINE Alu 0 147 2 1 980 1053 83 123 12 chr11 51842105 51842276 -70001580 - B2_Mm1t SINE B2 -3 190 1 1 980 533 90 0 13 chr11 51843115 51843194 -70000662 + B1_Mus2 SINE Alu 69 146 -1 1 980 509 280 21 0 chr11 51843472 51843615 -70000241 + B4A SINE B4 2 147 -145 1 980 502 226 18 177 chr11 51844472 51844698 -69999158 + B4A SINE B4 103 292 0 1 980 939 157 215 0 chr11 51844818 51844990 -69998866 + B3 SINE B2 2 210 -6 1 980 788 192 59 75 chr11 51845092 51845278 -69998578 - B3 SINE B2 -4 191 9 1 980 657 192 0 70 chr11 51845537 51845694 -69998162 + B1_Mur4 SINE Alu 3 148 -2 1 980 189 0 0 0 chr11 51846136 51846157 -69997699 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 980 523 178 48 35 chr11 51846157 51846286 -69997570 - B1_Mur4 SINE Alu -13 137 2 1 980 437 237 52 0 chr11 51846540 51846637 -69997219 + RSINE1 SINE B4 3 104 -61 1 980 23 33 0 0 chr11 51847184 51847214 -69996642 + AT_rich Low_complexity Low_complexity 1 30 0 1 980 648 205 0 0 chr11 51847272 51847384 -69996472 - PB1D9 SINE Alu -8 112 1 1 980 551 243 171 32 chr11 51847973 51848160 -69995696 + ID_B1 SINE B4 12 224 0 1 980 246 62 0 0 chr11 51848161 51848193 -69995663 + (CACG)n Simple_repeat Simple_repeat 4 35 0 1 980 237 65 0 0 chr11 51848194 51848225 -69995631 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 980 288 367 49 28 chr11 51848820 51848963 -69994893 + RSINE1 SINE B4 3 148 -17 1 980 664 262 0 0 chr11 51848990 51849131 -69994725 + B1_Mur1 SINE Alu 1 141 -8 1 980 1138 55 14 0 chr11 51849936 51850081 -69993775 + B1_Mm SINE Alu 1 147 0 1 980 1399 57 6 11 chr11 51850430 51850608 -69993248 + B2_Mm2 SINE B2 1 177 -18 1 980 354 208 42 120 chr11 51851612 51851754 -69992102 - MLT1A0 LTR MaLR -8 357 227 1 980 248 306 26 77 chr11 51851802 51851919 -69991937 - MLT1A0 LTR MaLR -222 152 42 1 980 1278 69 39 44 chr11 51851923 51852105 -69991751 - B2_Mm2 SINE B2 -14 181 1 1 980 2272 119 8 14 chr11 51852120 51852477 -69991379 + RLTR15 LTR ERVK 1 355 -4 1 980 238 300 17 0 chr11 51852514 51852574 -69991282 - ID4 SINE ID -9 74 14 1 980 333 55 82 0 chr11 51852623 51852696 -69991160 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 980 371 289 9 35 chr11 51852701 51852816 -69991040 - B1F SINE Alu -27 122 8 1 980 771 142 102 22 chr11 51852973 51853110 -69990746 - B1_Mur3 SINE Alu 0 149 2 1 980 3261 270 96 16 chr11 51853209 51854243 -69989613 - Lx8 LINE L1 -35 7438 6323 1 980 472 245 20 0 chr11 51854261 51854359 -69989497 + ID_B1 SINE B4 2 101 -123 1 980 629 213 37 0 chr11 51854432 51854568 -69989288 + B3A SINE B2 1 141 -57 1 980 32 20 0 20 chr11 51854798 51854816 -69989040 + AT_rich Low_complexity Low_complexity 1 18 0 1 980 1370 87 16 0 chr11 51854816 51855001 -69988855 + B2_Mm2 SINE B2 2 189 -6 1 980 32 20 0 20 chr11 51855001 51855032 -69988824 + AT_rich Low_complexity Low_complexity 1 31 0 1 980 1846 61 0 0 chr11 51855127 51855355 -69988501 + L1Md_T LINE L1 6355 6582 0 1 980 358 304 98 37 chr11 51855758 51856004 -69987852 + L2a LINE L2 2340 2600 -819 1 980 298 316 58 22 chr11 51856508 51856647 -69987209 + L2a LINE L2 3282 3425 -1 1 980 355 289 53 0 chr11 51856721 51856835 -69987021 - PB1 SINE Alu -2 125 6 1 980 234 111 0 0 chr11 51857638 51857674 -69986182 - B2_Mm2 SINE B2 -155 40 5 1 980 883 178 167 5 chr11 51857688 51857874 -69985982 - B3 SINE B2 0 216 1 1 980 720 54 0 0 chr11 51857899 51857992 -69985864 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 980 441 0 0 0 chr11 51858041 51858090 -69985766 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 980 1108 76 0 20 chr11 51858123 51858271 -69985585 + B1_Mus2 SINE Alu 1 145 -2 1 980 552 200 138 47 chr11 51858271 51858452 -69985404 - B3 SINE B2 -7 209 16 1 980 354 215 105 21 chr11 51858827 51858922 -69984934 - B1F SINE Alu 0 149 47 1 980 993 208 60 10 chr11 51858975 51859174 -69984682 + B3 SINE B2 3 211 -5 1 980 562 172 101 8 chr11 51859417 51859546 -69984310 - B1_Mur4 SINE Alu -1 149 9 1 980 455 305 114 82 chr11 51861373 51861816 -69982040 - MLT2B3 LTR ERVL 0 717 209 1 980 479 261 109 0 chr11 51861920 51862039 -69981817 + RSINE1 SINE B4 1 132 -33 1 980 384 77 0 0 chr11 51862055 51862107 -69981749 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 980 379 250 117 0 chr11 51862296 51862424 -69981432 + RSINE1 SINE B4 21 163 -2 1 980 191 192 12 37 chr11 51862428 51862509 -69981347 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 980 357 240 50 40 chr11 51862783 51862883 -69980973 - B1_Mur1 SINE Alu -10 139 39 1 980 222 233 9 72 chr11 51862883 51862994 -69980862 + CT-rich Low_complexity Low_complexity 5 108 0 1 980 449 302 8 15 chr11 51863345 51863476 -69980380 + ID_B1 SINE B4 86 215 -9 1 980 324 304 47 74 chr11 51863476 51863494 -69980362 + B1F2 SINE Alu 5 149 0 1 980 434 18 18 0 chr11 51863659 51863714 -69980142 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 980 201 39 0 0 chr11 51863732 51863758 -69980098 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 980 557 220 132 7 chr11 51863841 51863992 -69979864 + B3A SINE B2 15 184 -14 1 980 233 93 23 0 chr11 51864023 51864066 -69979790 - B1_Mur4 SINE Alu -1 149 106 1 980 23 0 0 0 chr11 51864597 51864620 -69979236 + AT_rich Low_complexity Low_complexity 1 23 0 1 980 973 136 7 0 chr11 51864620 51864767 -69979089 + B1_Mus1 SINE Alu 1 148 0 1 980 664 205 52 64 chr11 51864776 51864948 -69978908 - B3A SINE B2 -14 184 15 1 980 324 0 0 0 chr11 51864990 51865026 -69978830 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 980 223 330 10 50 chr11 51865043 51865142 -69978714 - RSINE1 SINE B4 -44 121 27 1 980 247 221 71 40 chr11 51865148 51865247 -69978609 + L1MEg LINE L1 1647 1748 -4494 1 980 292 234 39 0 chr11 51865279 51865356 -69978500 + ID4_ SINE ID 2 81 -2 1 980 1200 50 0 0 chr11 51865657 51865797 -69978059 + B1_Mus1 SINE Alu 2 141 -7 1 980 252 0 0 0 chr11 51865801 51865829 -69978027 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 980 234 361 136 8 chr11 51865881 51866241 -69977615 + L1MEg LINE L1 2439 2844 -3302 1 980 232 252 92 75 chr11 51866427 51866547 -69977309 - ORR1E LTR MaLR -212 147 26 1 980 724 296 0 6 chr11 51867521 51867698 -69976158 - B3A SINE B2 -22 176 1 1 980 225 0 0 0 chr11 51869038 51869063 -69974793 + (A)n Simple_repeat Simple_repeat 1 25 0 1 980 1539 39 0 6 chr11 51869259 51869439 -69974417 - B2_Mm1t SINE B2 -14 179 1 1 980 3821 152 81 73 chr11 51869439 51870316 -69973540 - RMER19B LTR ERVK -18 884 1 1 980 277 300 80 18 chr11 51870683 51870795 -69973061 + LTR16B2 LTR ERVL 3 121 -341 1 980 272 276 132 0 chr11 51871426 51871502 -69972354 + 5S rRNA rRNA 5 90 -31 1 980 226 316 35 94 chr11 51871500 51871671 -69972185 - MER74A LTR ERVL -103 455 295 1 980 393 266 93 8 chr11 51871667 51871796 -69972060 - B1F1 SINE Alu 0 149 10 1 980 238 322 63 40 chr11 51871802 51872054 -69971802 - MER74A LTR ERVL -247 311 54 1 980 1018 239 120 20 chr11 51872091 51872436 -69971420 + MTD LTR MaLR 1 397 -22 1 980 476 307 51 116 chr11 51872474 51872828 -69971028 + MLT1B LTR MaLR 5 335 -55 1 980 387 335 118 39 chr11 51872866 51873229 -69970627 + L1M4 LINE L1 5311 5702 -476 1 980 237 188 0 0 chr11 51873457 51873505 -69970351 + L1M4 LINE L1 5817 5864 -314 1 980 628 171 124 0 chr11 51873514 51873643 -69970213 + B1_Mur2 SINE Alu 1 145 -4 1 980 1194 47 0 26 chr11 51873662 51873814 -69970042 + B1_Mus1 SINE Alu 1 148 0 1 980 302 260 14 0 chr11 51874165 51874238 -69969618 - MTB LTR MaLR -174 226 153 1 980 460 274 59 7 chr11 51874293 51874429 -69969427 - B1F SINE Alu -5 144 2 1 980 834 210 63 21 chr11 51874547 51874737 -69969119 - B3A SINE B2 0 198 1 1 980 266 273 43 52 chr11 51874740 51874789 -69969067 + L1M5 LINE L1 2677 2727 -3419 1 980 1776 187 72 35 chr11 51874789 51875193 -69968663 + MTD LTR MaLR 1 419 0 1 980 266 273 43 52 chr11 51875193 51875259 -69968597 + L1M5 LINE L1 2728 2791 -3355 1 980 611 55 284 0 chr11 51875279 51875388 -69968468 + B1_Mm SINE Alu 8 147 0 1 980 207 0 0 0 chr11 51875390 51875413 -69968443 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 980 345 265 12 0 chr11 51875425 51875508 -69968348 + RSINE1 SINE B4 3 86 -79 1 980 219 307 10 102 chr11 51875434 51875532 -69968324 + B3A SINE B2 11 99 -117 1 980 847 239 5 32 chr11 51875588 51875804 -69968052 + B3 SINE B2 1 210 -6 1 980 429 322 8 0 chr11 51876116 51876237 -69967619 + RSINE1 SINE B4 25 146 -19 1 980 1139 43 7 0 chr11 51876276 51876415 -69967441 + B1_Mus1 SINE Alu 1 140 -8 1 980 777 127 30 38 chr11 51876449 51876580 -69967276 + B1_Mur1 SINE Alu 2 131 -18 1 980 186 189 0 0 chr11 51876606 51876643 -69967213 + CT-rich Low_complexity Low_complexity 2 38 0 1 980 839 117 0 15 chr11 51876648 51876778 -69967078 + B1_Mur4 SINE Alu 23 150 0 1 980 578 231 0 0 chr11 51877305 51877413 -69966443 - PB1D10 SINE Alu -9 108 1 1 980 309 222 19 37 chr11 51877448 51877462 -69966394 + ID4 SINE ID 4 33 -119 1 980 300 250 0 0 chr11 51877462 51877522 -69966334 + ID SINE ID 23 82 -142 1 980 309 222 19 37 chr11 51877522 51877551 -69966305 + ID4 SINE ID 34 102 -50 1 980 286 250 0 0 chr11 51877646 51877718 -69966138 + B3A SINE B2 127 198 0 1 980 213 226 0 35 chr11 51877865 51877952 -69965904 + C-rich Low_complexity Low_complexity 2 85 0 1 980 884 166 171 0 chr11 51877995 51878176 -69965680 - B3 SINE B2 -3 213 2 1 980 951 148 7 7 chr11 51878466 51878616 -69965240 + B1_Mur4 SINE Alu 1 150 0 1 980 189 0 0 0 chr11 51878621 51878642 -69965214 + (A)n Simple_repeat Simple_repeat 1 21 0 1 980 531 45 0 0 chr11 51878686 51878752 -69965104 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 1 980 1240 35 0 0 chr11 51878754 51878896 -69964960 - B1_Mus1 SINE Alu -6 142 1 1 980 253 242 0 108 chr11 51879035 51879090 -69964766 - B1F SINE Alu -16 133 86 1 980 2319 131 131 0 chr11 51879090 51879480 -69964376 - BGLII_B LTR ERVK 0 441 1 1 980 253 242 0 108 chr11 51879480 51879498 -69964358 - B1F SINE Alu -64 85 68 1 980 594 279 135 47 chr11 51879610 51880058 -69963798 - L1M5 LINE L1 -3126 3020 2532 1 980 1981 140 75 149 chr11 51880058 51880561 -69963295 + RMER4A LTR ERVK 1 466 0 1 980 594 279 135 47 chr11 51880561 51880623 -69963233 - L1M5 LINE L1 -3615 2531 2465 1 980 268 262 24 12 chr11 51880626 51880711 -69963145 - RSINE1 SINE B4 -38 127 42 1 980 219 65 43 21 chr11 51881378 51881425 -69962431 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 980 839 100 143 0 chr11 51881559 51881699 -69962157 - B2_Mm2 SINE B2 -35 160 1 1 980 458 194 209 0 chr11 51881718 51881852 -69962004 - B3 SINE B2 0 216 55 1 980 653 208 57 31 chr11 51881878 51882037 -69961819 - RSINE1 SINE B4 0 165 3 1 980 452 262 58 41 chr11 51882037 51882208 -69961648 + L1MC4a LINE L1 6287 6460 -1422 1 980 364 264 170 9 chr11 51882253 51882365 -69961491 + L1MC4a LINE L1 6832 6984 -1058 1 980 265 299 0 0 chr11 51882410 51882477 -69961379 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 980 542 231 30 15 chr11 51882709 51882841 -69961015 + RSINE1 SINE B4 1 134 -31 1 980 377 314 8 24 chr11 51882926 51883053 -69960803 + ID_B1 SINE B4 87 211 -13 1 980 231 279 24 37 chr11 51883331 51883413 -69960443 + B3 SINE B2 109 189 -27 1 980 531 270 183 11 chr11 51883637 51883828 -69960028 + ID_B1 SINE B4 1 224 0 1 980 239 222 16 16 chr11 51884285 51884349 -69959507 + L1M2a1 LINE L1 1560 1623 -5493 1 980 1152 49 49 0 chr11 51884453 51884617 -69959239 + B2_Mm2 SINE B2 24 195 0 1 980 569 164 19 0 chr11 51884639 51884743 -69959113 + B3 SINE B2 17 122 -94 1 980 180 0 0 0 chr11 51884792 51884812 -69959044 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 980 572 169 146 0 chr11 51884920 51885050 -69958806 + B1_Mur1 SINE Alu 1 149 0 1 980 1080 111 111 0 chr11 51885279 51885469 -69958387 + RMER4B LTR ERVK 1 211 -374 1 980 219 189 75 0 chr11 51885832 51885885 -69957971 + B1_Mus1 SINE Alu 40 96 -52 1 980 207 0 0 0 chr11 51885887 51885910 -69957946 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 980 416 77 15 0 chr11 51885910 51885975 -69957881 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 980 326 211 145 0 chr11 51885994 51886070 -69957786 + B3 SINE B2 1 87 -129 1 980 183 80 0 0 chr11 51886149 51886174 -69957682 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 980 1014 140 0 0 chr11 51886175 51886354 -69957502 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 980 542 177 0 0 chr11 51886372 51886468 -69957388 + B3 SINE B2 108 203 -13 1 980 459 252 56 16 chr11 51886508 51886633 -69957223 + RSINE1 SINE B4 36 165 0 1 980 683 157 114 43 chr11 51886656 51886796 -69957060 - B1_Mur4 SINE Alu 0 150 1 1 980 2272 278 27 65 chr11 51886796 51887563 -69956293 - Lx8 LINE L1 -451 7022 6285 1 980 517 246 102 19 chr11 51887568 51887833 -69956023 - L1MC5 LINE L1 -113 7848 7562 1 980 207 0 0 0 chr11 51888343 51888366 -69955490 + (T)n Simple_repeat Simple_repeat 1 23 0 1 980 316 266 161 0 chr11 51888796 51888920 -69954936 + ID_B1 SINE B4 1 144 -80 1 980 532 200 12 17 chr11 51888982 51889155 -69954701 + GA-rich Low_complexity Low_complexity 2 173 0 1 980 694 187 44 22 chr11 51890970 51891107 -69952749 + B1F SINE Alu 2 141 -8 1 980 1144 57 0 0 chr11 51891203 51891344 -69952512 - B1_Mus2 SINE Alu -4 143 3 1 980 266 238 78 98 chr11 51892128 51892333 -69951523 + L1MC5 LINE L1 7704 7904 -57 1 980 829 209 142 18 chr11 51892956 51893175 -69950681 - MTD LTR MaLR 0 419 174 1 980 1546 48 16 0 chr11 51893255 51893444 -69950412 + B2_Mm2 SINE B2 2 193 -2 1 980 853 164 0 20 chr11 51894108 51894257 -69949599 + B1_Mus1 SINE Alu 2 147 -1 1 980 491 318 76 25 chr11 51894958 51895274 -69948582 + L1ME5 LINE L1 5721 6052 -142 1 980 409 232 30 0 chr11 51895322 51895490 -69948366 + (CATA)n Simple_repeat Simple_repeat 3 175 0 1 980 287 297 41 41 chr11 51895490 51895613 -69948243 + L1ME5 LINE L1 6070 6192 -2 1 980 21 36 0 0 chr11 51895614 51895642 -69948214 + AT_rich Low_complexity Low_complexity 1 28 0 1 980 605 271 24 72 chr11 51895847 51896054 -69947802 + B3A SINE B2 2 198 0 1 980 1235 96 0 27 chr11 51896065 51896248 -69947608 - B2_Mm2 SINE B2 -14 181 4 1 980 849 206 133 0 chr11 51896302 51896482 -69947374 - B3 SINE B2 -12 204 1 1 980 729 266 20 75 chr11 51896834 51896932 -69946924 + B3A SINE B2 2 93 -105 1 980 1282 96 127 0 chr11 51896932 51897129 -69946727 + URR1A DNA MER1_type 5 226 0 1 980 729 266 20 75 chr11 51897129 51897229 -69946627 + B3A SINE B2 94 189 -9 1 980 2112 107 165 3 chr11 51897407 51897746 -69946110 - ORR1B1 LTR MaLR 0 394 1 1 980 544 238 34 13 chr11 51898298 51898447 -69945409 + MLT1G LTR MaLR 426 577 -14 1 980 386 248 47 9 chr11 51898510 51898616 -69945240 + PB1D7 SINE Alu 4 113 -7 1 980 413 248 0 96 chr11 51898956 51898976 -69944880 - PB1D10 SINE Alu -1 116 4 1 980 490 243 0 19 chr11 51898976 51899081 -69944775 - ID_B1 SINE B4 -37 187 85 1 980 302 203 0 15 chr11 51899754 51899819 -69944037 + ID_B1 SINE B4 81 144 -80 1 980 611 151 292 29 chr11 51900900 51901071 -69942785 + B3 SINE B2 1 216 0 1 980 25 0 0 0 chr11 51901071 51901096 -69942760 + AT_rich Low_complexity Low_complexity 1 25 0 1 980 357 339 9 0 chr11 51901658 51901770 -69942086 + PB1D10 SINE Alu 5 117 0 1 980 502 118 11 11 chr11 51901819 51901913 -69941943 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 980 328 290 241 0 chr11 51902030 51902175 -69941681 - B3A SINE B2 -16 182 3 1 980 428 231 101 9 chr11 51902199 51902308 -69941548 - B1_Mur2 SINE Alu -29 120 2 1 980 401 227 45 9 chr11 51903347 51903458 -69940398 - MTEa LTR MaLR -28 351 237 1 980 212 348 0 28 chr11 51903570 51903641 -69940215 + B4A SINE B4 86 154 -138 1 980 534 293 53 21 chr11 51903679 51904002 -69939854 - MTE-int LTR MaLR -8 1501 1014 1 980 344 152 62 12 chr11 51903996 51904076 -69939780 - ORR1D2 LTR MaLR -286 84 1 1 980 355 316 50 11 chr11 51904085 51904264 -69939592 - MTEa LTR MaLR -167 192 7 1 980 498 292 22 0 chr11 51904352 51904489 -69939367 + B1F1 SINE Alu 2 141 -8 1 981 1667 32 0 0 chr11 51904520 51904710 -69939146 + B2_Mm1a SINE B2 2 191 -2 1 981 222 37 0 0 chr11 51904716 51904743 -69939113 + (A)n Simple_repeat Simple_repeat 1 27 0 1 981 616 239 8 0 chr11 51905130 51905260 -69938596 + ID_B1 SINE B4 93 223 -1 1 981 503 254 0 8 chr11 51906414 51906533 -69937323 + RSINE1 SINE B4 2 119 -46 1 981 300 339 9 0 chr11 51906737 51906846 -69937010 + GA-rich Low_complexity Low_complexity 4 113 0 1 981 783 172 7 27 chr11 51907031 51907180 -69936676 - B1_Mus2 SINE Alu 0 147 2 1 981 520 273 60 7 chr11 51907362 51907513 -69936343 - RSINE1 SINE B4 -5 160 2 1 981 1301 69 121 0 chr11 51907587 51907605 -69936251 - B2_Mm2 SINE B2 0 195 178 1 981 329 0 24 0 chr11 51907605 51907646 -69936210 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1 981 1301 69 121 0 chr11 51907646 51907801 -69936055 - B2_Mm2 SINE B2 -18 177 2 1 981 446 184 61 44 chr11 51907975 51908089 -69935767 - PB1D7 SINE Alu 0 120 5 1 981 204 328 30 53 chr11 51908915 51909047 -69934809 - MIRb SINE MIR -23 245 117 1 981 828 195 7 0 chr11 51909056 51909205 -69934651 + B1_Mur4 SINE Alu 1 150 0 1 981 212 224 53 20 chr11 51909205 51909355 -69934501 + (TA)n Simple_repeat Simple_repeat 2 156 0 1 981 518 212 26 0 chr11 51909361 51909474 -69934382 + PB1D9 SINE Alu 5 120 0 1 981 240 35 0 0 chr11 51909476 51909505 -69934351 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 1 981 343 306 45 0 chr11 51909954 51910088 -69933768 - B1F SINE Alu -8 141 2 1 981 372 262 0 19 chr11 51913952 51914057 -69929799 - B1F2 SINE Alu -30 119 17 1 981 1189 107 35 25 chr11 51914528 51914729 -69929127 - URR1A DNA MER1_type 0 226 24 1 981 354 219 75 97 chr11 51914738 51914897 -69928959 + MTE2b LTR MaLR 21 168 -211 1 981 262 234 57 80 chr11 51914927 51915015 -69928841 + RSINE1 SINE B4 47 132 -33 1 981 340 307 109 63 chr11 51915032 51915154 -69928702 + MTE2b LTR MaLR 185 318 -61 1 981 319 214 254 71 chr11 51915154 51915280 -69928576 + B1_Mur3 SINE Alu 1 149 0 1 981 340 307 109 63 chr11 51915280 51915331 -69928525 + MTE2b LTR MaLR 319 366 -13 1 981 187 55 26 53 chr11 51915518 51915556 -69928300 + (TATG)n Simple_repeat Simple_repeat 3 39 0 1 981 492 284 64 0 chr11 51915558 51915699 -69928157 - B3A SINE B2 -46 152 3 1 981 263 224 17 17 chr11 51915738 51915797 -69928059 + PB1D9 SINE Alu 1 59 -61 1 981 272 242 97 0 chr11 51916143 51916205 -69927651 - PB1D10 SINE Alu -49 68 1 1 981 1319 97 5 16 chr11 51916291 51916480 -69927376 + B2_Mm2 SINE B2 1 187 -8 1 981 414 266 0 124 chr11 51916846 51916975 -69926881 + B1F1 SINE Alu 5 117 -32 1 981 317 176 53 13 chr11 51916967 51917042 -69926814 + PB1D9 SINE Alu 31 108 -12 1 981 760 146 115 0 chr11 51917176 51917306 -69926550 - B1_Mur4 SINE Alu 0 150 6 1 981 669 200 234 0 chr11 51917360 51917535 -69926321 - B3 SINE B2 0 216 1 1 981 732 83 0 0 chr11 51917544 51917652 -69926204 - BC1_Mm scRNA scRNA -44 108 1 1 981 313 280 154 27 chr11 51918429 51918539 -69925317 + PB1 SINE Alu 1 124 -3 1 981 800 0 0 21 chr11 51918813 51918896 -69924960 + (TTC)n Simple_repeat Simple_repeat 3 84 0 1 981 1325 57 6 0 chr11 51918896 51919071 -69924785 + (TCC)n Simple_repeat Simple_repeat 3 178 0 1 981 800 0 0 21 chr11 51919071 51919084 -69924772 + (TTC)n Simple_repeat Simple_repeat 2 14 0 1 981 252 0 0 0 chr11 51919321 51919349 -69924507 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 981 1054 116 85 17 chr11 51919349 51919515 -69924341 - B2_Mm2 SINE B2 -12 183 3 1 981 413 271 21 0 chr11 51920043 51920139 -69923717 - RSINE1 SINE B4 -60 105 8 1 981 1321 86 31 26 chr11 51920503 51920694 -69923162 + B2_Mm1t SINE B2 2 193 0 1 981 327 104 0 0 chr11 51921011 51921059 -69922797 + (ATTG)n Simple_repeat Simple_repeat 4 51 0 1 981 6524 72 23 0 chr11 51921059 51922050 -69921806 - L1_Mus2 LINE L1 -573 5993 4984 1 981 291 183 179 16 chr11 51922172 51922287 -69921569 - PB1D9 SINE Alu -1 147 24 1 981 231 252 92 184 chr11 51922213 51922354 -69921502 - ID_B1 SINE B4 -7 217 90 1 981 325 224 211 0 chr11 51922871 51922947 -69920909 - B1_Mus1 SINE Alu -31 117 26 1 981 446 224 24 57 chr11 51922990 51923113 -69920743 - PB1D9 SINE Alu 0 120 2 1 981 495 273 18 0 chr11 51923144 51923254 -69920602 + RSINE1 SINE B4 2 113 -52 1 981 255 238 16 0 chr11 51923542 51923605 -69920251 + GA-rich Low_complexity Low_complexity 2 65 0 1 981 450 94 0 0 chr11 51923614 51923678 -69920178 + (TATG)n Simple_repeat Simple_repeat 2 65 0 1 981 333 0 0 0 chr11 51923692 51923729 -69920127 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 981 332 266 49 142 chr11 51923736 51923898 -69919958 + B4A SINE B4 78 224 -68 1 981 789 131 14 35 chr11 51923758 51923900 -69919956 + B1_Mus2 SINE Alu 9 147 0 1 981 2093 38 11 43 chr11 51924036 51924313 -69919543 - L1Md_F3 LINE L1 -12 6572 6305 1 981 397 165 17 112 chr11 51924434 51924550 -69919306 + MT2B LTR ERVL 153 257 -344 1 981 950 64 7 34 chr11 51924452 51924598 -69919258 + B1_Mus1 SINE Alu 7 148 0 1 981 387 244 64 93 chr11 51924457 51924629 -69919227 + B4A SINE B4 95 261 -31 1 981 498 157 21 43 chr11 51924679 51924772 -69919084 - B3 SINE B2 -124 92 2 1 981 1339 47 28 23 chr11 51925471 51925647 -69918209 - B2_Mm2 SINE B2 -17 178 2 1 981 23 33 0 0 chr11 51925783 51925813 -69918043 + AT_rich Low_complexity Low_complexity 1 30 0 1 981 649 221 117 0 chr11 51925813 51925976 -69917880 - B3 SINE B2 -33 183 2 1 981 256 262 15 15 chr11 51926162 51926228 -69917628 + RSINE1 SINE B4 23 88 -77 1 981 1276 101 28 0 chr11 51926285 51926464 -69917392 + B2_Mm2 SINE B2 5 188 -7 1 981 23 33 0 0 chr11 51926469 51926499 -69917357 + AT_rich Low_complexity Low_complexity 1 30 0 1 981 599 180 163 8 chr11 51927047 51927176 -69916680 - B1_Mur2 SINE Alu 0 149 1 1 981 213 326 10 42 chr11 51927519 51927615 -69916241 + PB1D10 SINE Alu 24 116 -1 1 981 235 263 59 20 chr11 51928047 51928148 -69915708 + B1_Mur1 SINE Alu 43 147 -2 1 981 307 286 74 28 chr11 51928292 51928400 -69915456 + B4 SINE B4 176 288 -4 1 981 405 280 94 57 chr11 51928706 51928865 -69914991 + ID_B1 SINE B4 7 171 -53 1 981 229 246 62 0 chr11 51928986 51929051 -69914805 - ID4_ SINE ID -9 74 6 1 981 271 182 0 0 chr11 51929136 51929180 -69914676 - RSINE1 SINE B4 -63 102 59 1 981 398 263 0 21 chr11 51929234 51929331 -69914525 + RSINE1 SINE B4 3 97 -68 1 981 284 269 172 0 chr11 51929537 51929630 -69914226 - PB1D7 SINE Alu -10 110 2 1 981 1212 48 0 0 chr11 51929739 51929886 -69913970 - B1_Mus2 SINE Alu 0 147 1 1 981 225 293 150 62 chr11 51930324 51930484 -69913372 + L1M5 LINE L1 5345 5518 -646 1 981 888 28 27 20 chr11 51930485 51930631 -69913225 + RMER17B LTR ERVK 314 460 -498 1 981 526 192 0 10 chr11 51931195 51931295 -69912561 + PB1D9 SINE Alu 4 102 -18 1 981 192 182 0 0 chr11 51933331 51933375 -69910481 + (TTAG)n Simple_repeat Simple_repeat 1 44 0 1 981 1969 87 63 0 chr11 51933469 51933769 -69910087 - ORR1A2 LTR MaLR -8 319 1 1 981 334 264 223 0 chr11 51933843 51933964 -69909892 - B1_Mur2 SINE Alu -1 148 1 1 981 1455 49 16 21 chr11 51933996 51934183 -69909673 + B2_Mm2 SINE B2 2 187 -8 1 981 316 296 34 0 chr11 51934718 51934806 -69909050 - MTE2a LTR MaLR -72 307 217 1 981 402 161 106 11 chr11 51934828 51934922 -69908934 + B1F2 SINE Alu 46 148 -1 1 981 401 235 59 186 chr11 51934952 51935172 -69908684 - MTE2a LTR MaLR -183 196 5 1 981 337 309 35 70 chr11 51935147 51935262 -69908594 - B1F1 SINE Alu -36 113 3 1 981 234 0 0 0 chr11 51936942 51936968 -69906888 + (A)n Simple_repeat Simple_repeat 1 26 0 1 981 1183 50 0 0 chr11 51937013 51937154 -69906702 + B1_Mus1 SINE Alu 2 142 -6 1 981 333 239 21 21 chr11 51937316 51937410 -69906446 - B1F2 SINE Alu -15 134 41 1 981 483 268 51 9 chr11 51937837 51937982 -69905874 + B3 SINE B2 63 213 -3 1 981 363 246 164 17 chr11 51938007 51938123 -69905733 + ID_B1 SINE B4 3 135 -89 1 981 603 255 19 45 chr11 51938180 51938336 -69905520 + RSINE1 SINE B4 8 159 -6 1 981 25 0 0 0 chr11 51938457 51938482 -69905374 + AT_rich Low_complexity Low_complexity 1 25 0 1 981 258 269 117 11 chr11 51938838 51938932 -69904924 - B3A SINE B2 -59 139 36 1 981 445 205 16 125 chr11 51939025 51939127 -69904729 + PB1D9 SINE Alu 5 97 -23 1 981 652 192 138 0 chr11 51939127 51939257 -69904599 - B1_Mur2 SINE Alu 0 149 2 1 981 445 205 16 125 chr11 51939257 51939282 -69904574 + PB1D9 SINE Alu 98 118 -2 1 981 1194 49 7 0 chr11 51939377 51939521 -69904335 - B1_Mm SINE Alu -1 146 2 1 981 312 206 84 61 chr11 51939854 51940006 -69903850 - B1_Mus1 SINE Alu 0 149 2 1 981 216 242 48 16 chr11 51939954 51940017 -69903839 - B4 SINE B4 -152 140 76 1 981 293 278 66 88 chr11 51940521 51940767 -69903089 - MTE2a LTR MaLR 0 379 124 1 981 615 85 311 0 chr11 51941676 51941782 -69902074 - B1_Mus1 SINE Alu -9 139 1 1 981 951 94 30 42 chr11 51941812 51941979 -69901877 + B2_Mm2 SINE B2 3 167 -28 1 981 435 184 46 0 chr11 51941995 51942082 -69901774 - B3A SINE B2 -107 91 1 1 981 256 310 40 0 chr11 51942515 51942615 -69901241 - ID_B1 SINE B4 -36 188 85 1 981 431 18 18 0 chr11 51942646 51942702 -69901154 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 981 318 187 200 36 chr11 51942710 51942821 -69901035 - B1_Mur2 SINE Alu -15 134 1 1 981 598 227 0 68 chr11 51942872 51943033 -69900823 - B3 SINE B2 -64 152 3 1 981 256 222 139 58 chr11 51943820 51943906 -69899950 - RSINE1 SINE B4 -28 137 45 1 981 551 219 74 0 chr11 51943910 51944073 -69899783 - B3A SINE B2 -26 190 1 1 981 677 260 19 0 chr11 51944131 51944285 -69899571 - B3A SINE B2 -26 172 16 1 981 276 272 12 0 chr11 51944502 51944583 -69899273 + ID4 SINE ID 1 82 -1 1 981 481 222 134 95 chr11 51944623 51944802 -69899054 - B3 SINE B2 0 216 31 1 981 465 19 0 0 chr11 51944805 51944859 -69898997 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 1 981 307 247 23 23 chr11 51944860 51944947 -69898909 - PB1D7 SINE Alu -13 107 21 1 981 266 228 127 0 chr11 51945455 51945543 -69898313 + B1F1 SINE Alu 13 109 -8 1 981 1038 121 0 0 chr11 51946124 51946349 -69897507 + (TG)n Simple_repeat Simple_repeat 1 225 0 1 981 541 267 70 66 chr11 51946373 51946646 -69897210 - B4 SINE B4 -18 274 1 1 981 2352 101 0 71 chr11 51947886 51948282 -69895574 - MMETn-int LTR ERVK -3920 924 557 1 981 240 130 0 0 chr11 51948282 51948328 -69895528 + (T)n Simple_repeat Simple_repeat 1 46 0 1 981 355 111 0 40 chr11 51948328 51948418 -69895438 - B1_Mur4 SINE Alu 0 150 39 1 981 3113 111 9 97 chr11 51948420 51948462 -69895394 - MMETn-int LTR ERVK -4325 519 478 1 981 233 0 62 0 chr11 51948462 51948494 -69895362 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 981 3113 111 9 97 chr11 51948494 51949018 -69894838 - MMETn-int LTR ERVK -4367 477 4 1 981 1306 164 31 134 chr11 51949020 51949379 -69894477 - RLTRETN_Mm LTR ERVK 0 322 1 1 981 244 303 0 0 chr11 51950561 51950626 -69893230 - ID4_ SINE ID -85 67 3 1 981 2369 157 22 5 chr11 51951860 51952270 -69891586 + MTC LTR MaLR 3 419 -2 1 981 245 244 133 0 chr11 51952380 51952471 -69891385 - MTEa LTR MaLR -11 368 267 1 981 1333 195 16 15 chr11 51952473 51952756 -69891100 + ORR1C1 LTR MaLR 1 247 -99 1 981 742 193 0 0 chr11 51953155 51953295 -69890561 + ORR1C1 LTR MaLR 245 384 0 1 981 352 312 50 87 chr11 51953325 51953543 -69890313 - MTEa LTR MaLR -157 222 13 1 981 2022 294 56 9 chr11 51953561 51954223 -69889633 + Lx8 LINE L1 6417 7109 -364 1 981 441 54 0 0 chr11 51954391 51954447 -69889409 + (GGA)n Simple_repeat Simple_repeat 3 58 0 1 981 996 257 133 16 chr11 51954455 51954823 -69889033 - MTD LTR MaLR 0 419 9 1 981 921 261 33 57 chr11 51954848 51955148 -69888708 + RLTR18B LTR ERVK 15 307 -309 1 981 1267 247 34 30 chr11 51955129 51955520 -69888336 + RLTR18B LTR ERVK 143 512 0 1 981 261 325 86 15 chr11 51955766 51956201 -69887655 - L1MB8 LINE L1 -2 6176 5697 1 981 493 283 22 0 chr11 51956753 51956891 -69886965 + Lx8 LINE L1 7099 7239 -234 1 981 225 175 0 0 chr11 51957351 51957391 -69886465 - L1M3f LINE L1 -4642 686 647 1 981 348 182 207 30 chr11 51957891 51958055 -69885801 - MMAR1 DNA Mariner -1060 226 34 1 981 3940 22 22 0 chr11 51959116 51959568 -69884288 - L1_Mus1 LINE L1 -1 6566 6105 1 981 1020 279 89 27 chr11 51959606 51959978 -69883878 - Lx8 LINE L1 0 7473 7079 1 981 23 33 0 0 chr11 51960521 51960551 -69883305 + AT_rich Low_complexity Low_complexity 1 30 0 1 981 358 319 0 0 chr11 51960642 51960733 -69883123 + ID_B1 SINE B4 114 204 -20 1 981 1250 280 87 6 chr11 51960734 51961118 -69882738 - MTD LTR MaLR -14 405 1 1 981 189 0 0 0 chr11 51961142 51961163 -69882693 + (A)n Simple_repeat Simple_repeat 1 21 0 1 981 812 216 14 0 chr11 51961600 51961739 -69882117 - B1_Mur1 SINE Alu -6 143 3 1 981 247 301 121 0 chr11 51961771 51961854 -69882002 + PB1D10 SINE Alu 10 102 -15 1 981 651 176 24 0 chr11 51963658 51963783 -69880073 - B1_Mur2 SINE Alu -20 129 2 1 981 258 197 43 57 chr11 51965144 51965214 -69878642 - ID4_ SINE ID -14 69 1 1 981 186 103 0 0 chr11 51965618 51965647 -69878209 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 1 981 1492 215 122 3 chr11 51965881 51966250 -69877606 - MTD LTR MaLR 0 419 7 1 981 236 235 59 0 chr11 51966305 51966373 -69877483 - Lx8 LINE L1 -1554 5919 5848 1 981 1609 150 0 0 chr11 51967088 51967335 -69876521 + Lx4A LINE L1 6808 7054 -4 1 981 425 19 19 0 chr11 51967335 51967389 -69876467 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 981 1783 227 52 18 chr11 51968048 51968551 -69875305 - RLTR11A2 LTR ERVK -2 525 6 1 981 190 302 19 68 chr11 51970460 51970563 -69873293 + L2a LINE L2 3010 3107 -319 1 981 617 86 0 11 chr11 51970634 51970728 -69873128 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 1 981 2680 51 31 34 chr11 51970768 51971156 -69872700 - RLTR10C LTR ERVK -49 387 1 1 981 35574 29 0 15 chr11 51971156 51975494 -69868362 - MMERVK10C-int LTR ERVK 0 7581 652 1 981 366 67 0 0 chr11 51975497 51975542 -69868314 - MMERVK10C-int LTR ERVK -6405 137 93 1 981 264 206 0 73 chr11 51975542 51975678 -69868178 + T-rich Low_complexity Low_complexity 4 129 0 1 981 387 23 0 0 chr11 51975719 51975762 -69868094 - MMERVK10C-int LTR ERVK -7314 267 225 1 981 245 200 0 0 chr11 51975762 51975807 -69868049 - RLTR27 LTR ERVK -34 275 231 1 981 1518 44 0 0 chr11 51975807 51975987 -69867869 - MMERVK10C-int LTR ERVK -7401 180 1 1 981 3559 38 28 14 chr11 51975987 51976417 -69867439 - RLTR10C LTR ERVK 0 436 1 1 981 215 296 28 0 chr11 51976515 51976586 -69867270 + MIRb SINE MIR 102 174 -94 1 981 185 250 0 30 chr11 51976671 51976737 -69867119 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 1 981 922 122 108 67 chr11 51978471 51978665 -69865191 + URR1A DNA MER1_type 1 202 -24 1 981 1217 15 0 0 chr11 51981077 51981214 -69862642 + B1_Mus2 SINE Alu 1 137 -10 1 981 441 0 0 0 chr11 51981214 51981263 -69862593 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 981 27 81 0 0 chr11 51981641 51981703 -69862153 + GC_rich Low_complexity Low_complexity 1 62 0 1 981 219 69 0 0 chr11 51982578 51982607 -69861249 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1 981 7767 160 35 13 chr11 51982608 51984200 -69859656 - Lx5 LINE L1 0 7050 5418 1 981 731 210 28 0 chr11 51984406 51984549 -69859307 - B1_Mur3 SINE Alu -2 147 1 1 981 476 246 8 39 chr11 51984958 51985085 -69858771 - PB1 SINE Alu -3 124 2 1 981 306 331 104 10 chr11 51985628 51985820 -69858036 - L1M4c LINE L1 -1611 4771 4562 1 981 321 197 0 0 chr11 51985820 51985886 -69857970 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1 981 907 216 33 28 chr11 51986039 51986253 -69857603 + B3 SINE B2 1 215 -1 1 981 868 204 66 0 chr11 51986276 51986472 -69857384 - B3 SINE B2 0 216 8 1 981 241 154 39 0 chr11 51986522 51986574 -69857282 + T-rich Low_complexity Low_complexity 1 54 0 1 981 1412 60 10 7 chr11 51986832 51987132 -69856724 + (TTCTCC)n Simple_repeat Simple_repeat 1 300 0 1 981 724 42 11 0 chr11 51987137 51987232 -69856624 - B1_Mus2 SINE Alu 0 147 52 1 981 800 172 59 35 chr11 51987536 51987705 -69856151 - MTC LTR MaLR -8 413 241 1 981 897 263 191 44 chr11 51987706 51987776 -69856080 - L1M4c LINE L1 -5811 573 510 1 981 4337 156 91 50 chr11 51987776 51988529 -69855327 - RMER19B LTR ERVK 0 902 80 1 981 300 53 0 0 chr11 51988529 51988567 -69855289 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 981 4337 156 91 50 chr11 51988567 51988679 -69855177 - RMER19B LTR ERVK -823 79 1 1 981 897 263 191 44 chr11 51988679 51989105 -69854751 - L1M4c LINE L1 -5875 509 4 1 981 490 282 35 14 chr11 51989100 51989244 -69854612 + L1M4 LINE L1 4856 5002 -1144 1 981 33 56 0 0 chr11 51989272 51989326 -69854530 + AT_rich Low_complexity Low_complexity 1 54 0 1 981 489 34 0 0 chr11 51989359 51989418 -69854438 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 981 1268 259 31 39 chr11 51990759 51991141 -69852715 + MTE2a LTR MaLR 1 379 0 1 981 230 200 0 48 chr11 51991312 51991375 -69852481 - MLT1A1 LTR MaLR -38 370 311 1 981 24 0 0 0 chr11 51991377 51991401 -69852455 + AT_rich Low_complexity Low_complexity 1 24 0 1 981 347 227 0 10 chr11 51991583 51991681 -69852175 + (CATA)n Simple_repeat Simple_repeat 2 98 0 1 981 957 229 60 0 chr11 51991685 51991886 -69851970 - ID_B1 SINE B4 -11 213 1 1 981 2603 146 53 12 chr11 51992110 51992601 -69851255 - RLTR28 LTR ERVL -13 511 1 1 981 341 209 0 23 chr11 51992820 51992838 -69851018 + polypyrimidine Low_complexity Low_complexity 71 88 0 1 981 270 0 0 0 chr11 51992838 51992868 -69850988 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 981 752 159 4 30 chr11 51992868 51993108 -69850748 + CT-rich Low_complexity Low_complexity 1 233 0 1 981 531 296 49 0 chr11 51993197 51993339 -69850517 - B1F SINE Alu 0 149 1 1 981 182 191 0 21 chr11 51993864 51993912 -69849944 + CT-rich Low_complexity Low_complexity 3 49 0 1 981 1005 283 76 3 chr11 51994100 51994415 -69849441 + ORR1E LTR MaLR 15 352 -7 1 981 1644 42 0 0 chr11 51994471 51994664 -69849192 + B2_Mm1a SINE B2 1 193 0 1 981 691 280 39 138 chr11 51995529 51995885 -69847971 - MER74A LTR ERVL -198 360 40 1 981 1266 172 167 65 chr11 51995885 51996037 -69847819 - ORR1D1 LTR MaLR -4 370 177 1 981 369 0 0 0 chr11 51996037 51996078 -69847778 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 981 1266 172 167 65 chr11 51996078 51996261 -69847595 - ORR1D1 LTR MaLR -198 176 3 1 981 3267 208 69 21 chr11 51996286 51996999 -69846857 + Lx6 LINE L1 6546 7292 -168 1 981 352 291 94 16 chr11 51997083 51997275 -69846581 + Lx7 LINE L1 7206 7412 -284 1 981 25 0 0 0 chr11 51997381 51997406 -69846450 + AT_rich Low_complexity Low_complexity 1 25 0 1 981 449 141 12 0 chr11 51997406 51997491 -69846365 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 981 386 252 48 0 chr11 51997494 51997597 -69846259 + MERVL_2A-int LTR ERVL 4899 5006 -755 1 981 641 213 14 14 chr11 51997615 51997753 -69846103 + MERVL_2A-int LTR ERVL 5073 5210 -551 1 981 855 210 92 35 chr11 51997759 51998089 -69845767 + MT2A LTR ERVL 90 441 -92 1 981 231 36 0 0 chr11 51998193 51998221 -69845635 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 981 383 115 0 0 chr11 51998223 51998284 -69845572 - B2_Mm2 SINE B2 -33 162 102 1 981 243 0 0 0 chr11 51998701 51998728 -69845128 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 981 1019 122 0 20 chr11 51999117 51999268 -69844588 + B1_Mus1 SINE Alu 1 148 0 1 981 532 177 48 8 chr11 51999281 51999367 -69844489 + B1_Mur4 SINE Alu 1 87 -63 1 981 657 96 0 0 chr11 51999367 51999461 -69844395 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 981 532 170 53 9 chr11 51999461 51999496 -69844360 + B1_Mur4 SINE Alu 88 126 -24 1 981 441 287 17 90 chr11 51999635 51999923 -69843933 - L1MD2 LINE L1 -115 6064 5789 1 981 403 104 26 0 chr11 51999918 51999995 -69843861 - Lx4A LINE L1 0 7058 6980 1 981 1121 99 0 136 chr11 52000016 52000214 -69843642 - Lx4A LINE L1 -166 6892 6722 1 981 376 280 0 0 chr11 52000830 52000948 -69842908 + C-rich Low_complexity Low_complexity 5 122 0 2 981 317 327 0 0 chr11 52001896 52002058 -69841798 + (CTG)n Simple_repeat Simple_repeat 3 164 0 3 981 232 368 0 0 chr11 52002163 52002334 -69841522 + (CTG)n Simple_repeat Simple_repeat 3 173 0 4 981 402 114 0 0 chr11 52003642 52003712 -69840144 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 981 1048 192 103 5 chr11 52003785 52003989 -69839867 - URR1B DNA MER1_type 0 225 2 6 981 1095 234 58 114 chr11 52004532 52004928 -69838928 - MTE2a LTR MaLR 0 379 6 7 981 804 171 7 0 chr11 52005141 52005281 -69838575 - B1_Mus2 SINE Alu 0 147 7 8 981 207 0 0 0 chr11 52005486 52005509 -69838347 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 9 981 952 128 0 0 chr11 52005509 52005642 -69838214 - B1_Mus2 SINE Alu -13 134 2 1 981 347 273 121 46 chr11 52006022 52006195 -69837661 + MLT1D LTR MaLR 139 324 -181 1 981 456 176 44 0 chr11 52006297 52006388 -69837468 + MTC LTR MaLR 1 95 -326 1 981 375 103 0 17 chr11 52006630 52006689 -69837167 - B1_Mur1 SINE Alu -18 131 74 1 981 374 262 12 0 chr11 52007000 52007084 -69836772 - B1_Mur4 SINE Alu -62 88 4 1 981 655 201 82 0 chr11 52007129 52007263 -69836593 + B1_Mur4 SINE Alu 4 148 -2 1 981 531 309 127 44 chr11 52008301 52008341 -69835515 + MER67A LTR ERV1 3 43 -500 1 981 755 220 0 0 chr11 52008341 52008482 -69835374 - B1_Mur2 SINE Alu -8 141 1 1 981 531 309 127 44 chr11 52008482 52008851 -69835005 + MER67A LTR ERV1 44 446 -97 1 981 274 311 5 0 chr11 52008874 52008958 -69834898 - MIRb SINE MIR -157 111 23 1 981 37 0 0 0 chr11 52009076 52009113 -69834743 + AT_rich Low_complexity Low_complexity 1 37 0 1 981 360 148 0 0 chr11 52009269 52009330 -69834526 + (TCC)n Simple_repeat Simple_repeat 3 63 0 2 981 269 239 14 69 chr11 52009365 52009437 -69834419 - ID4_ SINE ID -7 76 9 2 981 433 314 70 63 chr11 52009446 52009792 -69834064 - L1MC1 LINE L1 -116 6228 5879 2 981 657 231 38 13 chr11 52009808 52009966 -69833890 - B3A SINE B2 -1 197 36 2 981 551 265 66 122 chr11 52010153 52010307 -69833549 + L1M3 LINE L1 4113 4258 -1882 2 981 243 61 0 0 chr11 52010307 52010340 -69833516 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 981 551 265 66 122 chr11 52010340 52010580 -69833276 + L1M3 LINE L1 4259 4485 -1655 2 981 291 313 24 41 chr11 52010591 52010761 -69833095 + L1M4 LINE L1 3402 3568 -2572 2 981 883 281 65 18 chr11 52010779 52011119 -69832737 + L1M4 LINE L1 3654 4009 -2137 2 981 632 128 18 0 chr11 52011129 52011238 -69832618 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 2 981 585 281 118 53 chr11 52011238 52011636 -69832220 + L1M4 LINE L1 4004 4427 -1713 2 981 3776 195 86 37 chr11 52011952 52013120 -69830736 - RMER1A Other Other 0 1030 14 2 981 258 32 0 0 chr11 52013356 52013387 -69830469 + (ATTTG)n Simple_repeat Simple_repeat 1 31 0 2 981 2171 102 43 6 chr11 52013481 52013808 -69830048 + Lx4A LINE L1 6713 7051 -7 3 981 240 35 0 0 chr11 52013808 52013837 -69830019 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 981 597 292 7 7 chr11 52014030 52014178 -69829678 + RSINE1 SINE B4 4 151 -14 3 981 425 90 15 0 chr11 52014318 52014385 -69829471 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 981 1127 102 0 0 chr11 52015810 52015957 -69827899 - B1_Mus2 SINE Alu 0 147 1 3 981 6342 26 16 1 chr11 52016053 52016791 -69827065 - L1Md_F2 LINE L1 0 6582 5834 3 981 1168 225 22 120 chr11 52017000 52017409 -69826447 - MTE2a LTR MaLR 0 379 11 3 981 386 262 21 47 chr11 52017443 52017679 -69826177 - L1M2 LINE L1 -817 5483 5254 3 981 8346 46 2 4 chr11 52017692 52018759 -69825097 - L1_Mus1 LINE L1 0 6654 5508 3 981 4342 116 84 38 chr11 52019169 52019711 -69824145 - RMER17A2 LTR ERVK 0 906 329 3 981 786 50 0 0 chr11 52019711 52019810 -69824046 + (GGAGA)n Simple_repeat Simple_repeat 2 100 0 4 981 4342 116 84 38 chr11 52019810 52020133 -69823723 - RMER17A2 LTR ERVK -578 328 1 3 981 572 264 42 47 chr11 52020133 52020295 -69823561 - ID_B1 SINE B4 -61 163 3 4 981 227 200 0 167 chr11 52020295 52020373 -69823483 - L1M2 LINE L1 -1532 4611 4547 3 981 676 180 0 24 chr11 52020522 52020647 -69823209 - B1_Mur4 SINE Alu -23 127 6 4 981 296 297 42 67 chr11 52020546 52020665 -69823191 - B4A SINE B4 -98 194 79 4 981 4369 187 89 59 chr11 52021124 52022154 -69821702 + RMER1B Other Other 3 1063 -3 4 981 905 290 45 16 chr11 52022145 52022457 -69821399 - L1M2 LINE L1 -3347 2796 2476 3 981 791 116 33 0 chr11 52022482 52022603 -69821253 + B1_Mus2 SINE Alu 13 137 -10 4 981 35 24 0 0 chr11 52022615 52022657 -69821199 + AT_rich Low_complexity Low_complexity 1 42 0 4 981 276 147 147 0 chr11 52022674 52022742 -69821114 - L1M2 LINE L1 -3689 2454 2377 3 981 237 272 137 0 chr11 52022754 52022829 -69821027 - PB1D10 SINE Alu -51 98 13 4 981 66 14 0 0 chr11 52022947 52023020 -69820836 + AT_rich Low_complexity Low_complexity 1 73 0 4 981 229 364 85 7 chr11 52024302 52024443 -69819413 - L1M3e LINE L1 -6732 298 147 4 981 213 0 91 45 chr11 52024536 52024580 -69819276 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 5 981 514 250 0 27 chr11 52024919 52025104 -69818752 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 981 219 69 0 0 chr11 52025099 52025128 -69818728 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 981 205 346 8 8 chr11 52025141 52025275 -69818581 + T-rich Low_complexity Low_complexity 1 134 0 5 981 939 298 88 25 chr11 52025288 52025856 -69818000 - L1MA4 LINE L1 -4 6296 5693 5 981 225 198 31 52 chr11 52027674 52027770 -69816086 - Lx9 LINE L1 -42 7602 7509 5 981 1172 49 35 3 chr11 52027777 52028067 -69815789 + (TCTA)n Simple_repeat Simple_repeat 1 299 0 5 981 315 0 0 0 chr11 52028290 52028325 -69815531 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 981 207 0 0 0 chr11 52028325 52028347 -69815509 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 981 1923 109 28 22 chr11 52028586 52028906 -69814950 + RLTRETN_Mm LTR ERVK 1 322 0 5 981 800 239 75 0 chr11 52029205 52029393 -69814463 - B3 SINE B2 -13 203 2 6 981 329 225 135 10 chr11 52029516 52029709 -69814147 - L1M2 LINE L1 -1673 4470 4254 6 981 669 127 8 8 chr11 52029782 52029901 -69813955 + URR1B DNA MER1_type 101 219 -6 6 981 363 222 27 36 chr11 52029985 52030097 -69813759 + L1M2 LINE L1 4915 5025 -1118 6 981 1559 58 11 0 chr11 52030166 52030357 -69813499 - B2_Mm1a SINE B2 0 193 1 6 981 407 267 74 28 chr11 52030574 52030790 -69813066 + L1MCa LINE L1 1639 1864 -4644 6 981 1678 241 22 24 chr11 52030816 52031229 -69812627 + Lx5 LINE L1 6630 7041 -9 6 981 6444 111 2 19 chr11 52031226 52032233 -69811623 + L1_Mm LINE L1 2700 3689 -2194 6 981 183 80 0 0 chr11 52032239 52032264 -69811592 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 981 649 233 124 11 chr11 52032367 52032545 -69811311 - B3A SINE B2 0 198 1 6 981 814 122 7 7 chr11 52032761 52032884 -69810972 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 7 981 1359 50 0 0 chr11 52032884 52033064 -69810792 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 981 814 122 7 7 chr11 52033064 52033080 -69810776 + (TTTC)n Simple_repeat Simple_repeat 1 16 0 7 981 885 111 34 14 chr11 52033080 52033226 -69810630 - B1_Mur4 SINE Alu -1 149 1 7 981 403 294 8 45 chr11 52033417 52033549 -69810307 + RSINE1 SINE B4 2 128 -37 7 981 586 268 17 72 chr11 52034700 52034881 -69808975 + B3 SINE B2 40 210 -6 7 981 25 51 0 0 chr11 52034883 52034922 -69808934 + AT_rich Low_complexity Low_complexity 1 39 0 7 981 813 163 7 0 chr11 52034930 52035065 -69808791 + B1_Mur4 SINE Alu 2 137 -13 7 981 824 132 117 19 chr11 52035058 52035220 -69808636 - B2_Mm1a SINE B2 -4 189 12 7 981 485 78 156 0 chr11 52035211 52035288 -69808568 - B2_Mm2 SINE B2 -106 89 1 7 981 306 164 0 0 chr11 52035316 52035371 -69808485 + CT-rich Low_complexity Low_complexity 6 60 0 8 122 1131 75 0 7 chr11 52035437 52035585 -69808271 - B1_Mus2 SINE Alu 0 147 1 8 982 1091 83 7 0 chr11 52035645 52035790 -69808066 + B1_Mus2 SINE Alu 2 147 0 8 982 207 0 0 0 chr11 52035793 52035816 -69808040 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 982 237 108 0 0 chr11 52035814 52035851 -69808005 + (A)n Simple_repeat Simple_repeat 1 37 0 8 982 938 23 31 0 chr11 52035864 52035993 -69807863 + (TC)n Simple_repeat Simple_repeat 2 134 0 8 982 1093 83 0 27 chr11 52036334 52036483 -69807373 - B1_Mus1 SINE Alu -3 145 1 8 982 915 137 45 56 chr11 52036507 52036685 -69807171 - B2_Mm2 SINE B2 -18 177 2 8 982 234 91 0 0 chr11 52036991 52037024 -69806832 + (T)n Simple_repeat Simple_repeat 1 33 0 8 982 1173 69 0 0 chr11 52037026 52037171 -69806685 - B1_Mus1 SINE Alu 0 148 4 8 982 612 250 60 45 chr11 52037181 52037382 -69806474 - L1M5 LINE L1 -513 5660 5457 9 982 254 266 99 73 chr11 52037621 52037873 -69805983 + RMER20B LTR ERVK 113 396 -231 9 982 292 208 153 0 chr11 52038245 52038310 -69805546 + MTE2b LTR MaLR 1 76 -303 9 982 1334 107 14 14 chr11 52038310 52038528 -69805328 + URR1B DNA MER1_type 2 219 -6 9 982 399 282 34 17 chr11 52038534 52038653 -69805203 + MTE2b LTR MaLR 60 180 -199 9 982 711 211 0 0 chr11 52038654 52038782 -69805074 + B3A SINE B2 1 128 -70 9 982 434 33 17 0 chr11 52038782 52038842 -69805014 + (TC)n Simple_repeat Simple_repeat 1 61 0 9 982 724 167 32 65 chr11 52038851 52039005 -69804851 - B1_Mur4 SINE Alu -1 149 1 9 982 218 104 0 77 chr11 52039016 52039032 -69804824 + A-rich Low_complexity Low_complexity 1 13 0 9 982 1037 56 34 34 chr11 52039032 52039179 -69804677 + B1_Mus2 SINE Alu 1 147 0 9 982 218 104 0 77 chr11 52039179 52039214 -69804642 + A-rich Low_complexity Low_complexity 14 48 0 9 982 377 301 46 51 chr11 52039218 52039389 -69804467 + MTE2b LTR MaLR 174 343 -36 9 982 602 245 37 12 chr11 52039389 52039550 -69804306 - RLTR19 LTR ERVK 0 496 332 1 982 243 0 0 0 chr11 52039550 52039577 -69804279 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 982 936 174 20 55 chr11 52039585 52039786 -69804070 + B2_Mm2 SINE B2 2 195 0 1 982 471 147 0 0 chr11 52039787 52039862 -69803994 + ID2 SINE ID 1 75 -8 1 982 1568 118 21 156 chr11 52039897 52040270 -69803586 - RLTR19 LTR ERVK -176 323 1 1 982 1141 222 89 13 chr11 52040835 52041149 -69802707 - RMER15 LTR ERVL 0 575 238 1 982 896 262 14 0 chr11 52041477 52041687 -69802169 - ID_B1 SINE B4 -11 213 1 1 982 694 267 14 42 chr11 52041723 52041742 -69802114 - B3 SINE B2 -7 209 191 1 982 1777 143 199 17 chr11 52041742 52042098 -69801758 - MTC LTR MaLR 0 421 1 1 982 694 267 14 42 chr11 52042098 52042293 -69801563 - B3 SINE B2 -26 190 1 1 982 183 42 0 0 chr11 52042595 52042619 -69801237 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 982 231 140 0 0 chr11 52042974 52043024 -69800832 + (TTTTTG)n Simple_repeat Simple_repeat 4 53 0 1 982 1113 69 20 7 chr11 52043029 52043175 -69800681 - B1_Mus1 SINE Alu 0 148 1 1 982 516 219 25 154 chr11 52043229 52043391 -69800465 - B1F2 SINE Alu -2 147 7 1 982 969 227 15 0 chr11 52043278 52043476 -69800380 - ID_B1 SINE B4 -23 201 1 1 982 225 0 0 0 chr11 52044263 52044288 -69799568 + (CAGGG)n Simple_repeat Simple_repeat 5 29 0 1 982 275 119 108 95 chr11 52044675 52044749 -69799107 + B1_Mur1 SINE Alu 73 147 -2 1 982 236 301 129 0 chr11 52044782 52044875 -69798981 + B1F SINE Alu 19 123 -26 1 982 23 0 0 0 chr11 52045006 52045029 -69798827 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 593 157 116 0 chr11 52047304 52047425 -69796431 + B1_Mm SINE Alu 13 147 0 1 982 257 299 88 128 chr11 52047655 52047881 -69795975 - ID_B1 SINE B4 -7 217 1 1 982 210 282 89 49 chr11 52047881 52048004 -69795852 - B1F SINE Alu 0 149 22 1 982 715 131 40 24 chr11 52047999 52048124 -69795732 - B1_Mur4 SINE Alu -15 135 9 1 982 258 252 105 19 chr11 52048030 52048135 -69795721 - B4A SINE B4 -98 194 81 1 982 235 302 35 86 chr11 52048159 52048275 -69795581 - PB1D10 SINE Alu 0 117 8 1 982 604 173 104 8 chr11 52048295 52048429 -69795427 - B1_Mus1 SINE Alu -1 147 1 1 982 818 137 26 33 chr11 52048451 52048602 -69795254 - B1_Mur4 SINE Alu 0 150 1 1 982 234 0 0 0 chr11 52048675 52048701 -69795155 + (A)n Simple_repeat Simple_repeat 1 26 0 1 982 575 153 192 8 chr11 52048711 52048836 -69795020 + B1_Mus1 SINE Alu 1 148 0 1 982 1222 42 0 0 chr11 52049197 52049341 -69794515 - B1_Mus2 SINE Alu 0 147 4 1 982 487 277 8 8 chr11 52049546 52049666 -69794190 + RSINE1 SINE B4 42 161 -4 1 982 935 41 0 0 chr11 52049710 52049833 -69794023 + B1_Mm SINE Alu 25 147 0 1 982 244 196 39 0 chr11 52049912 52049963 -69793893 + CT-rich Low_complexity Low_complexity 5 57 0 1 982 207 100 0 0 chr11 52049975 52050005 -69793851 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 1 982 710 164 53 23 chr11 52050017 52050148 -69793708 + B1_Mus1 SINE Alu 1 135 -13 1 982 267 31 0 0 chr11 52050173 52050205 -69793651 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 982 24 0 0 0 chr11 52050588 52050612 -69793244 + AT_rich Low_complexity Low_complexity 1 24 0 1 982 399 235 25 25 chr11 52050621 52050739 -69793117 + PB1D9 SINE Alu 3 120 0 1 982 639 207 44 0 chr11 52050860 52050995 -69792861 - B1_Mur2 SINE Alu -8 141 1 1 982 481 310 53 32 chr11 52051013 52051203 -69792653 - B3A SINE B2 -4 194 1 1 982 274 362 52 0 chr11 52051291 52051407 -69792449 - B4A SINE B4 -169 123 2 1 982 613 227 42 14 chr11 52051459 52051602 -69792254 - B1_Mus2 SINE Alu 0 147 1 1 982 1372 72 33 11 chr11 52051824 52052008 -69791848 - B2_Mm2 SINE B2 -6 189 2 1 982 482 219 241 36 chr11 52052028 52052194 -69791662 - B3 SINE B2 -1 215 16 1 982 298 253 42 52 chr11 52052253 52052349 -69791507 - RSINE1 SINE B4 -48 117 23 1 982 465 44 14 14 chr11 52052372 52052441 -69791415 - B1_Mus2 SINE Alu 0 147 79 1 982 266 0 0 0 chr11 52052436 52052471 -69791385 + B1_Mur4 SINE Alu 111 145 -5 1 982 1239 48 0 0 chr11 52052791 52052937 -69790919 - B1_Mus2 SINE Alu 0 147 2 1 982 865 214 32 74 chr11 52053259 52053476 -69790380 + B3 SINE B2 3 210 -6 1 982 1407 58 10 21 chr11 52053622 52053816 -69790040 + B2_Mm1t SINE B2 2 193 0 1 982 263 218 18 18 chr11 52053899 52053955 -69789901 - ID4 SINE ID -2 81 26 1 982 1060 97 7 0 chr11 52054178 52054323 -69789533 + B1_Mus1 SINE Alu 3 148 0 1 982 1441 212 133 22 chr11 52055671 52056038 -69787818 + MTD LTR MaLR 3 410 -9 1 982 803 166 65 0 chr11 52056336 52056475 -69787381 - B1_Mus1 SINE Alu 0 148 1 1 982 345 283 25 42 chr11 52056478 52056596 -69787260 - PB1D10 SINE Alu -1 116 1 1 982 370 345 25 16 chr11 52056784 52056905 -69786951 - B4A SINE B4 -167 125 4 1 982 187 133 22 22 chr11 52056925 52056971 -69786885 + GA-rich Low_complexity Low_complexity 1 46 0 1 982 24 0 0 0 chr11 52056978 52057002 -69786854 + AT_rich Low_complexity Low_complexity 1 24 0 1 982 328 292 208 12 chr11 52057530 52057703 -69786153 + L1M4 LINE L1 2387 2593 -3553 1 982 287 268 98 37 chr11 52057774 52057888 -69785968 + L1M4 LINE L1 2709 2825 -3321 1 982 530 237 101 29 chr11 52057888 52058027 -69785829 + B1_Mur2 SINE Alu 1 149 0 1 982 287 275 154 26 chr11 52058027 52058168 -69785688 + L1M4 LINE L1 2826 3003 -3143 1 982 715 60 242 33 chr11 52058174 52058294 -69785562 + B1_Mus1 SINE Alu 2 146 -2 1 982 422 143 180 20 chr11 52058766 52058866 -69784990 + PB1D9 SINE Alu 5 120 0 1 982 345 287 113 16 chr11 52058976 52059100 -69784756 - B3 SINE B2 -68 148 13 1 982 255 61 0 0 chr11 52060021 52060054 -69783802 + (T)n Simple_repeat Simple_repeat 1 33 0 1 982 1020 115 152 0 chr11 52060386 52060551 -69783305 - B2_Mm1t SINE B2 -2 191 2 1 982 354 205 37 7 chr11 52060614 52060707 -69783149 + B1_Mus2 SINE Alu 24 147 0 1 982 1125 37 15 0 chr11 52060773 52060907 -69782949 - B1_Mus2 SINE Alu -9 138 3 1 982 295 122 49 15 chr11 52060907 52060974 -69782882 - PB1D7 SINE Alu 0 127 60 1 982 229 307 52 26 chr11 52061037 52061114 -69782742 - ID4 SINE ID 0 83 5 1 982 285 299 9 61 chr11 52061292 52061406 -69782450 - PB1D10 SINE Alu 0 117 10 1 982 683 211 42 7 chr11 52061540 52061683 -69782173 + B1_Mus1 SINE Alu 1 148 0 1 982 568 302 6 12 chr11 52061690 52061854 -69782002 + RSINE1 SINE B4 3 165 0 1 982 618 190 94 7 chr11 52061875 52062013 -69781843 + B1_Mur4 SINE Alu 1 150 0 1 982 271 307 68 0 chr11 52062340 52062428 -69781428 - PB1 SINE Alu -18 109 16 1 982 444 269 216 0 chr11 52062887 52063021 -69780835 - RSINE1 SINE B4 0 165 3 1 982 220 171 0 0 chr11 52063144 52063179 -69780677 - B1_Mur2 SINE Alu -32 117 83 1 982 310 258 0 15 chr11 52063438 52063505 -69780351 - ID4_ SINE ID -13 70 5 1 982 228 354 91 0 chr11 52063604 52063703 -69780153 + MER70B LTR ERVL 414 521 -57 1 982 218 303 0 43 chr11 52063911 52064004 -69779852 - B1F SINE Alu -51 98 10 1 982 310 245 70 38 chr11 52065587 52065746 -69778110 - B3 SINE B2 -2 193 30 1 982 574 248 8 0 chr11 52065883 52066000 -69777856 - PB1D9 SINE Alu -1 119 2 1 982 230 191 0 0 chr11 52067946 52067988 -69775868 - PB1D7 SINE Alu -65 55 14 1 982 201 102 98 39 chr11 52068694 52068745 -69775111 + (CAGGG)n Simple_repeat Simple_repeat 3 56 0 1 982 783 193 0 0 chr11 52070716 52070856 -69773000 - B1_Mus1 SINE Alu 0 148 9 1 982 812 175 176 21 chr11 52072641 52072828 -69771028 - B3 SINE B2 0 216 1 1 982 239 306 49 68 chr11 52074243 52074424 -69769432 - MIRc SINE MIR -60 202 23 1 982 427 198 44 0 chr11 52074764 52074855 -69769001 - B1F SINE Alu -14 135 41 1 982 579 175 68 45 chr11 52076151 52076283 -69767573 + B1_Mur1 SINE Alu 1 135 -14 1 982 220 311 167 30 chr11 52076382 52076687 -69767169 + L2 LINE L2 1837 2183 -1236 1 982 279 0 0 0 chr11 52076803 52076834 -69767022 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 982 589 239 29 43 chr11 52076896 52077036 -69766820 - B1_Mur4 SINE Alu 0 150 13 1 982 340 287 142 87 chr11 52077072 52077404 -69766452 + L2 LINE L2 2373 2722 -697 1 982 1057 77 35 7 chr11 52077721 52077864 -69765992 - B1_Mus1 SINE Alu -1 147 1 1 982 438 20 0 0 chr11 52078186 52078237 -69765619 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 982 279 0 0 0 chr11 52078237 52078267 -69765589 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 982 468 123 0 0 chr11 52080501 52080574 -69763282 + (TTTTC)n Simple_repeat Simple_repeat 4 76 0 1 982 611 38 0 0 chr11 52080574 52080654 -69763202 + B1_Mus2 SINE Alu 68 147 0 1 982 1198 105 53 0 chr11 52080671 52080842 -69763014 - B2_Mm2 SINE B2 -14 181 2 1 982 239 339 52 0 chr11 52082487 52082602 -69761254 - MIR SINE MIR -128 148 28 1 982 255 125 0 0 chr11 52084203 52084243 -69759613 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 982 475 278 134 17 chr11 52084279 52084451 -69759405 - B4 SINE B4 -6 286 95 1 982 513 278 123 47 chr11 52084467 52084637 -69759219 - ID_B1 SINE B4 -13 211 29 1 982 331 198 0 21 chr11 52084650 52084667 -69759189 + polypyrimidine Low_complexity Low_complexity 76 92 0 1 982 1458 48 26 26 chr11 52084667 52084858 -69758998 - B2_Mm1a SINE B2 -1 192 2 2 982 331 198 0 21 chr11 52084858 52084933 -69758923 + CT-rich Low_complexity Low_complexity 3 75 0 2 982 1102 92 126 11 chr11 52084957 52085132 -69758724 + B2_Mm2 SINE B2 1 195 0 2 982 207 0 0 0 chr11 52086112 52086135 -69757721 + (TGGG)n Simple_repeat Simple_repeat 4 26 0 2 982 271 237 45 5 chr11 52087205 52087292 -69756564 + PB1 SINE Alu 11 59 -68 2 982 303 68 0 22 chr11 52087502 52087547 -69756309 - ID_B1 SINE B4 -7 217 174 2 982 274 152 44 29 chr11 52087547 52087570 -69756286 - B1F SINE Alu -7 142 74 2 982 232 188 29 72 chr11 52087548 52087617 -69756239 - ID SINE ID -156 68 3 2 982 592 186 73 0 chr11 52087714 52087838 -69756018 - B1_Mur2 SINE Alu -7 142 10 2 982 416 253 138 67 chr11 52090711 52091049 -69752807 + RLTR16 LTR ERVK 1 433 -259 2 982 1201 48 0 20 chr11 52092050 52092188 -69751668 + B1_Mus1 SINE Alu 1 138 -10 2 982 189 0 0 0 chr11 52092188 52092209 -69751647 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 982 647 266 73 13 chr11 52092230 52092462 -69751394 - L1MB7 LINE L1 -20 6164 5919 2 982 295 263 0 62 chr11 52092734 52092815 -69751041 + RSINE1 SINE B4 30 105 -60 2 982 239 292 49 163 chr11 52093618 52093802 -69750054 + RSINE1 SINE B4 3 165 0 2 982 210 137 19 38 chr11 52094609 52094662 -69749194 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 2 982 22 0 0 0 chr11 52096643 52096665 -69747191 + GC_rich Low_complexity Low_complexity 1 22 0 2 982 29 47 0 0 chr11 52096689 52096732 -69747124 + GC_rich Low_complexity Low_complexity 1 43 0 2 982 36 0 0 0 chr11 52096892 52096928 -69746928 + GC_rich Low_complexity Low_complexity 1 36 0 2 982 381 22 0 0 chr11 52097224 52097270 -69746586 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 982 189 0 0 0 chr11 52098622 52098643 -69745213 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 982 264 185 0 18 chr11 52099076 52099131 -69744725 + B1F SINE Alu 96 149 0 2 982 607 303 40 24 chr11 52099199 52099449 -69744407 - MIR SINE MIR -1 261 8 2 982 518 196 18 27 chr11 52099498 52099608 -69744248 - B1_Mus2 SINE Alu -10 137 29 2 982 542 264 45 79 chr11 52099731 52099908 -69743948 + ID_B1 SINE B4 2 172 -52 2 982 216 296 12 36 chr11 52099838 52099922 -69743934 + PB1D10 SINE Alu 27 108 -9 2 982 223 189 38 0 chr11 52100304 52100357 -69743499 + MIRb SINE MIR 208 262 -6 2 982 528 30 0 0 chr11 52100840 52100906 -69742950 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 982 297 0 0 0 chr11 52100906 52100939 -69742917 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 982 254 232 174 0 chr11 52101045 52101114 -69742742 + ID SINE ID 2 82 -142 2 982 429 297 34 8 chr11 52101114 52101233 -69742623 + B4 SINE B4 148 269 -23 2 982 384 22 0 0 chr11 52101236 52101281 -69742575 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 982 689 264 32 32 chr11 52101308 52101496 -69742360 + B3 SINE B2 23 210 -6 2 982 378 0 0 0 chr11 52101503 52101545 -69742311 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 982 385 234 0 0 chr11 52101550 52101627 -69742229 + ID_B1 SINE B4 148 224 0 2 982 387 286 76 0 chr11 52101705 52101824 -69742032 + B1F SINE Alu 18 145 -4 2 982 882 196 7 0 chr11 52101824 52101967 -69741889 + B1_Mur4 SINE Alu 1 144 -6 2 982 1013 91 27 43 chr11 52101998 52102156 -69741700 + B2_Mm2 SINE B2 8 158 -37 2 982 207 0 0 0 chr11 52102156 52102179 -69741677 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 982 1013 91 27 43 chr11 52102179 52102204 -69741652 + B2_Mm2 SINE B2 159 188 -7 2 982 1375 77 66 0 chr11 52102209 52102392 -69741464 + B2_Mm2 SINE B2 1 195 0 2 982 1072 83 0 46 chr11 52102401 52102552 -69741304 + B1_Mus1 SINE Alu 4 147 -1 2 982 403 282 41 34 chr11 52103044 52103191 -69740665 - B1F SINE Alu -1 148 1 2 982 213 121 0 0 chr11 52103202 52103235 -69740621 + (T)n Simple_repeat Simple_repeat 1 33 0 2 982 321 306 67 0 chr11 52103257 52103375 -69740481 - B4A SINE B4 -148 144 19 2 982 282 280 13 13 chr11 52103312 52103388 -69740468 - ID4_ SINE ID -2 81 6 2 982 2249 120 53 43 chr11 52103391 52103784 -69740072 - MTC LTR MaLR -1 420 24 2 982 1710 26 0 0 chr11 52103893 52104084 -69739772 - B2_Mm1a SINE B2 -2 191 1 2 982 189 0 0 0 chr11 52104144 52104165 -69739691 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 982 318 270 101 0 chr11 52104188 52104277 -69739579 - RSINE1 SINE B4 -8 157 60 2 982 339 113 0 0 chr11 52104277 52104330 -69739526 + (CAT)n Simple_repeat Simple_repeat 3 55 0 2 982 333 0 0 0 chr11 52104333 52104370 -69739486 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 982 367 373 22 7 chr11 52104371 52104506 -69739350 - RSINE1 SINE B4 -24 141 5 2 982 325 365 22 7 chr11 52104860 52104998 -69738858 + B1F2 SINE Alu 8 147 -2 2 982 798 209 142 30 chr11 52105017 52105214 -69738642 + ID_B1 SINE B4 2 220 -4 2 982 1152 81 0 0 chr11 52105214 52105361 -69738495 + B1_Mus1 SINE Alu 1 148 0 2 982 307 231 51 13 chr11 52105361 52105440 -69738416 + B3A SINE B2 30 111 -87 2 982 327 49 0 0 chr11 52105463 52105504 -69738352 + (CACTA)n Simple_repeat Simple_repeat 5 45 0 2 982 244 340 75 19 chr11 52105915 52106074 -69737782 + L3 LINE CR1 4215 4382 -107 2 982 238 274 143 17 chr11 52106547 52106666 -69737190 + MIR SINE MIR 67 200 -62 2 982 462 200 68 9 chr11 52106666 52106807 -69737049 + B4 SINE B4 4 164 -1 2 982 261 0 0 0 chr11 52106810 52106839 -69737017 + (CAG)n Simple_repeat Simple_repeat 1 29 0 2 982 204 40 0 0 chr11 52106839 52106863 -69736993 + (CTA)n Simple_repeat Simple_repeat 1 25 0 2 982 486 277 38 8 chr11 52106865 52106996 -69736860 + RSINE1 SINE B4 3 137 -28 2 982 251 291 119 52 chr11 52107109 52107243 -69736613 - MIRb SINE MIR -38 230 88 2 982 335 177 24 37 chr11 52107761 52107843 -69736013 - MIRm SINE MIR -109 167 87 2 982 22 0 0 0 chr11 52108440 52108462 -69735394 + AT_rich Low_complexity Low_complexity 1 22 0 2 982 724 203 225 0 chr11 52108684 52108866 -69734990 - ID_B1 SINE B4 -1 223 1 2 982 1024 63 0 21 chr11 52109009 52109154 -69734702 + B1_Mus2 SINE Alu 6 147 0 2 982 217 0 61 0 chr11 52109154 52109187 -69734669 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 2 982 689 0 0 12 chr11 52109187 52109269 -69734587 + (GAA)n Simple_repeat Simple_repeat 2 82 0 2 982 252 0 0 0 chr11 52109660 52109688 -69734168 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 982 658 265 0 22 chr11 52110263 52110402 -69733454 - B1F SINE Alu -13 136 1 2 982 989 134 14 0 chr11 52110531 52110673 -69733183 + B1_Mur4 SINE Alu 1 144 -6 2 982 198 71 0 0 chr11 52110676 52110704 -69733152 + (TAA)n Simple_repeat Simple_repeat 2 29 0 2 982 550 251 98 0 chr11 52111602 52111721 -69732135 - ID_B1 SINE B4 -1 223 94 2 982 225 267 34 157 chr11 52111712 52111724 -69732132 - B1F2 SINE Alu -58 91 52 2 982 364 188 0 59 chr11 52111724 52111792 -69732064 - ID_B1 SINE B4 -57 167 104 2 982 877 181 0 20 chr11 52111825 52111977 -69731879 + B1_Mur3 SINE Alu 1 149 0 2 982 183 80 0 0 chr11 52111986 52112011 -69731845 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 982 364 268 113 0 chr11 52112035 52112132 -69731724 + RSINE1 SINE B4 6 113 -52 2 982 27 0 0 0 chr11 52112156 52112183 -69731673 + AT_rich Low_complexity Low_complexity 1 27 0 2 982 311 236 108 36 chr11 52112229 52112368 -69731488 - MIR SINE MIR -87 181 25 2 982 281 289 107 26 chr11 52112575 52112722 -69731134 - MIRc SINE MIR -62 206 46 2 982 26 0 0 0 chr11 52113781 52113807 -69730049 + AT_rich Low_complexity Low_complexity 1 26 0 2 982 21 0 0 0 chr11 52114028 52114049 -69729807 + GC_rich Low_complexity Low_complexity 1 21 0 2 982 354 23 0 0 chr11 52114319 52114362 -69729494 + (TTTTG)n Simple_repeat Simple_repeat 4 46 0 2 982 1062 198 10 34 chr11 52114704 52114908 -69728948 - B3 SINE B2 -17 199 1 2 982 223 186 0 0 chr11 52114917 52114960 -69728896 + T-rich Low_complexity Low_complexity 1 43 0 2 982 1452 39 0 0 chr11 52114966 52115171 -69728685 + (TG)n Simple_repeat Simple_repeat 1 205 0 2 982 516 280 56 58 chr11 52115172 52115314 -69728542 - RSINE1 SINE B4 -50 242 38 2 982 391 143 0 16 chr11 52115314 52115378 -69728478 - B1F SINE Alu -80 69 7 2 982 516 280 56 58 chr11 52115378 52115399 -69728457 - RSINE1 SINE B4 -50 37 5 2 982 1174 64 0 0 chr11 52115437 52115578 -69728278 - B1_Mm SINE Alu -2 145 5 2 982 540 193 0 0 chr11 52115686 52115769 -69728087 + ID_B1 SINE B4 126 208 -16 2 982 209 303 0 0 chr11 52115771 52115837 -69728019 + GA-rich Low_complexity Low_complexity 1 66 0 2 982 539 139 144 164 chr11 52116335 52116481 -69727375 + B1_Mur2 SINE Alu 1 143 -6 2 982 697 135 0 16 chr11 52116497 52116625 -69727231 + GA-rich Low_complexity Low_complexity 3 128 0 2 982 1226 174 24 10 chr11 52116823 52117032 -69726824 + B3 SINE B2 1 212 -4 2 982 1407 85 5 11 chr11 52117057 52117247 -69726609 + B2_Mm1t SINE B2 2 190 -3 2 982 1163 35 14 0 chr11 52117271 52117412 -69726444 - B1_Mus1 SINE Alu -1 147 5 2 982 875 229 19 63 chr11 52117412 52117428 -69726428 - B3A SINE B2 -1 197 183 2 982 333 0 0 0 chr11 52117428 52117465 -69726391 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 982 875 229 19 63 chr11 52117465 52117653 -69726203 - B3A SINE B2 -16 182 2 2 982 2001 129 50 12 chr11 52118462 52118800 -69725056 - RMER6B LTR ERVK 0 461 111 3 982 1408 68 17 0 chr11 52119112 52119289 -69724567 - B2_Mm2 SINE B2 -14 181 2 3 982 496 213 44 44 chr11 52119390 52119503 -69724353 + PB1D10 SINE Alu 1 113 -4 3 982 524 256 170 42 chr11 52119536 52119632 -69724224 + B4A SINE B4 1 93 -199 3 982 375 23 0 0 chr11 52119632 52119676 -69724180 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 982 524 256 170 42 chr11 52119676 52119791 -69724065 + B4A SINE B4 94 239 -53 3 982 421 210 88 20 chr11 52119778 52119880 -69723976 + PB1D9 SINE Alu 9 117 -3 3 982 311 263 218 26 chr11 52119880 52119925 -69723931 + B4A SINE B4 112 269 -23 3 982 527 144 0 10 chr11 52120309 52120407 -69723449 + CT-rich Low_complexity Low_complexity 2 98 0 3 982 272 349 16 113 chr11 52120548 52120572 -69723284 - B4A SINE B4 -46 246 177 3 982 653 248 22 0 chr11 52120572 52120709 -69723147 - B1F2 SINE Alu -1 148 9 3 982 272 349 16 113 chr11 52120709 52120742 -69723114 - B4A SINE B4 -46 176 72 3 982 244 235 72 14 chr11 52120754 52120823 -69723033 - B3A SINE B2 -123 75 3 3 982 248 288 110 0 chr11 52120837 52120910 -69722946 - ID4 SINE ID 0 83 3 3 982 251 258 0 31 chr11 52121711 52121775 -69722081 + B1_Mur1 SINE Alu 85 146 -3 3 982 234 0 0 0 chr11 52121801 52121827 -69722029 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 982 318 188 0 135 chr11 52121836 52121910 -69721946 - PB1D10 SINE Alu -31 86 23 3 982 716 227 71 0 chr11 52121854 52121995 -69721861 - ID_B1 SINE B4 -65 159 9 3 982 437 181 0 0 chr11 52121997 52122069 -69721787 - B1_Mus2 SINE Alu -35 112 41 3 982 226 286 18 0 chr11 52122425 52122481 -69721375 + B1_Mus1 SINE Alu 24 80 -68 3 982 326 167 154 0 chr11 52122436 52122514 -69721342 + ID_B1 SINE B4 115 204 -20 3 982 315 0 0 0 chr11 52122547 52122582 -69721274 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 3 982 778 199 13 27 chr11 52122582 52122732 -69721124 - B2_Mm2 SINE B2 -34 161 14 3 982 200 59 29 0 chr11 52123413 52123447 -69720409 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 982 1084 46 53 0 chr11 52123447 52123578 -69720278 - B1_Mus2 SINE Alu -9 138 1 3 982 666 236 7 13 chr11 52124751 52124901 -69718955 + B1F SINE Alu 1 149 0 3 982 219 295 82 0 chr11 52124904 52124965 -69718891 + ID_B1 SINE B4 87 152 -72 3 982 556 240 196 13 chr11 52124982 52125196 -69718660 + ID_B1 SINE B4 21 254 -38 3 982 432 37 0 0 chr11 52125242 52125296 -69718560 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 982 583 158 416 13 chr11 52125342 52125496 -69718360 + B3 SINE B2 1 216 0 3 982 826 265 76 38 chr11 52125771 52126034 -69717822 - Lx9 LINE L1 -456 7188 6916 3 982 231 267 42 6 chr11 52126038 52126204 -69717652 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 982 315 260 0 88 chr11 52126231 52126311 -69717545 + ID4_ SINE ID 10 82 -1 3 982 358 244 188 15 chr11 52126638 52126771 -69717085 + MLT1A1 LTR MaLR 252 407 -1 3 982 1038 193 53 5 chr11 52127166 52127374 -69716482 - ID_B1 SINE B4 -6 218 1 3 982 252 0 0 0 chr11 52128166 52128194 -69715662 + (CCTG)n Simple_repeat Simple_repeat 4 31 0 3 982 254 194 0 16 chr11 52128207 52128270 -69715586 + GA-rich Low_complexity Low_complexity 4 65 0 3 982 731 274 58 11 chr11 52128309 52128497 -69715359 + ID_B1 SINE B4 5 201 -23 3 982 687 230 108 16 chr11 52128545 52128739 -69715117 + ID_B1 SINE B4 2 213 -11 3 982 1115 196 14 9 chr11 52128787 52128998 -69714858 - B3 SINE B2 -4 212 1 3 982 821 213 39 22 chr11 52129014 52129192 -69714664 - ID_B1 SINE B4 -2 222 42 3 982 534 153 0 76 chr11 52129199 52129291 -69714565 + B1_Mus2 SINE Alu 52 136 -11 3 982 204 214 14 54 chr11 52129293 52129367 -69714489 + (TAA)n Simple_repeat Simple_repeat 1 71 0 3 982 441 292 22 77 chr11 52129467 52129649 -69714207 + MIR3 SINE MIR 34 205 -3 3 982 294 324 27 60 chr11 52129660 52129844 -69714012 - MIRc SINE MIR -15 253 76 3 982 301 304 106 21 chr11 52130147 52130162 -69713694 - PB1D10 SINE Alu -15 102 1 3 982 326 299 0 25 chr11 52130162 52130241 -69713615 - ID_B1 SINE B4 -66 158 82 3 982 333 271 35 0 chr11 52130272 52130357 -69713499 + ID_B1 SINE B4 126 213 -11 3 982 553 294 7 0 chr11 52130358 52130504 -69713352 + RSINE1 SINE B4 2 148 -17 3 982 246 123 35 17 chr11 52130539 52130597 -69713259 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 982 6289 32 0 0 chr11 52130620 52131343 -69712513 + L1Md_T LINE L1 5860 6582 0 3 982 946 171 0 7 chr11 52131387 52131534 -69712322 + B1_Mus2 SINE Alu 2 147 0 3 982 306 0 0 0 chr11 52131586 52131620 -69712236 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3 982 573 237 29 22 chr11 52133117 52133255 -69710601 - ID_B1 SINE B4 -8 216 78 3 982 819 263 29 5 chr11 52133790 52133996 -69709860 - ID_B1 SINE B4 -13 211 1 3 982 343 269 9 55 chr11 52134164 52134274 -69709582 + PB1D10 SINE Alu 13 117 0 3 982 325 240 135 0 chr11 52134278 52134382 -69709474 - MIRb SINE MIR -34 234 117 3 982 351 287 81 0 chr11 52134780 52134867 -69708989 + PB1D10 SINE Alu 5 98 -19 3 982 592 210 160 0 chr11 52134896 52135015 -69708841 + B1_Mur1 SINE Alu 3 140 -9 3 982 243 133 0 0 chr11 52135019 52135064 -69708792 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 3 982 431 252 27 27 chr11 52135088 52135198 -69708658 + ID_B1 SINE B4 79 188 -36 3 982 295 304 60 17 chr11 52135223 52135340 -69708516 + MER5A DNA MER1_type 66 187 -2 3 982 237 250 0 19 chr11 52135364 52135417 -69708439 - L3 LINE CR1 -112 4377 4326 3 982 324 248 84 63 chr11 52135503 52135645 -69708211 + B1F1 SINE Alu 5 149 0 3 982 302 254 84 0 chr11 52135651 52135722 -69708134 + ID4_ SINE ID 7 83 0 3 982 233 278 125 0 chr11 52135658 52135730 -69708126 + B4 SINE B4 14 94 -198 3 982 1143 88 0 0 chr11 52135732 52135879 -69707977 + B1_Mus1 SINE Alu 1 147 -1 3 982 252 200 0 0 chr11 52135902 52135982 -69707874 + GA-rich Low_complexity Low_complexity 2 81 0 3 982 972 179 102 49 chr11 52136032 52136237 -69707619 + B3 SINE B2 1 216 0 3 982 436 167 14 0 chr11 52136278 52136350 -69707506 + ID4_ SINE ID 11 83 0 3 982 200 167 21 0 chr11 52136436 52136484 -69707372 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 982 1429 85 16 0 chr11 52136538 52136727 -69707129 - B2_Mm2 SINE B2 -3 192 1 3 982 561 239 68 23 chr11 52136823 52136956 -69706900 + RSINE1 SINE B4 5 143 -22 3 982 378 0 0 0 chr11 52136967 52137009 -69706847 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 982 748 89 0 0 chr11 52138874 52138975 -69704881 + B2_Mm2 SINE B2 1 101 -94 3 982 829 83 0 0 chr11 52138976 52139084 -69704772 + B1_Mus1 SINE Alu 1 108 -40 3 982 738 117 22 208 chr11 52139507 52139690 -69704166 + B1_Mur4 SINE Alu 2 150 0 3 982 656 279 6 24 chr11 52139731 52139896 -69703960 - RSINE1 SINE B4 0 165 4 3 982 1105 96 0 0 chr11 52140024 52140170 -69703686 + B1_Mus2 SINE Alu 2 147 0 3 982 195 42 0 0 chr11 52140198 52140222 -69703634 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 982 2225 167 59 78 chr11 52140236 52140710 -69703146 - RLTR18 LTR ERVK -151 465 1 3 982 441 0 0 0 chr11 52141106 52141155 -69702701 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 982 358 48 63 0 chr11 52141391 52141454 -69702402 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 3 982 645 217 0 0 chr11 52141582 52141762 -69702094 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 982 288 352 56 0 chr11 52141764 52141872 -69701984 - PB1D10 SINE Alu -1 116 3 3 982 718 249 32 54 chr11 52141904 52142125 -69701731 + ID_B1 SINE B4 1 216 -8 3 982 505 228 123 0 chr11 52142186 52142300 -69701556 - RSINE1 SINE B4 -35 130 3 3 982 300 312 66 55 chr11 52142328 52142511 -69701345 + B4A SINE B4 5 189 -103 3 982 535 117 11 11 chr11 52142750 52142845 -69701011 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 3 982 1156 82 0 0 chr11 52142845 52142992 -69700864 - B1_Mus1 SINE Alu 0 148 2 3 982 23 68 0 0 chr11 52143146 52143190 -69700666 + AT_rich Low_complexity Low_complexity 1 44 0 3 982 231 273 52 83 chr11 52143274 52143370 -69700486 + B4A SINE B4 36 128 -164 3 982 305 277 38 105 chr11 52143328 52143461 -69700395 + B3 SINE B2 80 203 -13 3 982 323 238 122 19 chr11 52143482 52143589 -69700267 + HAL1-3A_ME LINE L1 1976 2093 -765 3 982 241 268 198 24 chr11 52143616 52143742 -69700114 - MLT1H LTR MaLR 0 549 402 3 982 230 333 16 81 chr11 52143885 52144009 -69699847 - MLT1H LTR MaLR -330 159 44 3 982 695 212 38 0 chr11 52144019 52144151 -69699705 + B1_Mus2 SINE Alu 1 137 -10 3 982 1696 125 41 8 chr11 52144209 52144475 -69699381 + ORR1B1 LTR MaLR 1 275 -119 3 982 697 233 31 134 chr11 52144475 52144934 -69698922 + RMER2 LTR ERV1 1 549 -18 3 982 821 67 16 16 chr11 52144938 52145059 -69698797 + ORR1B1 LTR MaLR 274 394 0 3 982 911 206 4 141 chr11 52145174 52145422 -69698434 + B3 SINE B2 3 216 0 3 982 560 188 16 57 chr11 52145426 52145550 -69698306 + PB1D9 SINE Alu 1 119 -1 3 982 318 26 0 0 chr11 52145550 52145589 -69698267 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 982 227 227 0 0 chr11 52145606 52145650 -69698206 + B3A SINE B2 3 46 -152 4 982 405 319 13 53 chr11 52145731 52145883 -69697973 + RSINE1 SINE B4 1 146 -19 4 982 538 140 55 253 chr11 52145906 52146088 -69697768 + B1F SINE Alu 3 148 -1 4 982 209 108 0 26 chr11 52146094 52146132 -69697724 + (GGGGA)n Simple_repeat Simple_repeat 5 41 0 4 982 1250 58 91 23 chr11 52147685 52147861 -69695995 + B2_Mm1a SINE B2 1 188 -5 4 982 2315 203 28 41 chr11 52147862 52148396 -69695460 + RLTR11A2 LTR ERVK 1 527 0 4 982 1237 142 103 0 chr11 52148413 52148617 -69695239 + URR1B DNA MER1_type 1 225 0 4 982 202 224 0 0 chr11 52148671 52148720 -69695136 + T-rich Low_complexity Low_complexity 1 49 0 4 982 324 0 0 0 chr11 52148887 52148923 -69694933 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 982 701 240 7 7 chr11 52148929 52149080 -69694776 - B3A SINE B2 -47 151 1 4 982 245 302 90 105 chr11 52149829 52149853 -69694003 - B3A SINE B2 0 198 2 4 982 374 295 34 114 chr11 52149853 52150029 -69693827 - RSINE1 SINE B4 -1 164 3 4 982 638 222 21 36 chr11 52150048 52150188 -69693668 - B1_Mur2 SINE Alu -9 140 3 4 982 278 180 20 0 chr11 52150229 52150279 -69693577 + PB1D10 SINE Alu 55 105 -12 4 982 385 250 97 45 chr11 52150294 52150314 -69693542 + B1F SINE Alu 2 142 -7 4 982 502 222 0 53 chr11 52150314 52150428 -69693428 + ID_B1 SINE B4 110 217 -7 4 982 392 0 21 0 chr11 52150449 52150497 -69693359 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 982 685 236 69 17 chr11 52150575 52150764 -69693092 + B3A SINE B2 1 197 -19 4 982 22 0 0 0 chr11 52150774 52150796 -69693060 + AT_rich Low_complexity Low_complexity 1 22 0 4 982 698 191 40 54 chr11 52150797 52150946 -69692910 + B1_Mur2 SINE Alu 2 148 -1 4 982 186 43 0 0 chr11 52150960 52150983 -69692873 + (GGA)n Simple_repeat Simple_repeat 3 25 0 4 982 312 256 58 45 chr11 52151615 52151650 -69692206 + B1F SINE Alu 3 144 -1 4 982 401 208 26 0 chr11 52151650 52151727 -69692129 + ID_B1 SINE B4 141 219 -5 4 982 254 313 118 9 chr11 52151880 52152024 -69691832 + MLT1D LTR MaLR 43 203 -424 4 982 294 217 0 0 chr11 52152284 52152353 -69691503 + (CACG)n Simple_repeat Simple_repeat 4 72 0 4 982 515 258 125 0 chr11 52152381 52152501 -69691355 - RSINE1 SINE B4 -25 140 6 4 982 651 236 7 26 chr11 52153485 52153637 -69690219 - RSINE1 SINE B4 -15 150 2 4 982 262 267 27 0 chr11 52153637 52153712 -69690144 + MIR SINE MIR 116 192 -70 4 982 182 329 12 35 chr11 52153909 52153994 -69689862 + MIRb SINE MIR 58 140 -128 4 982 925 256 23 5 chr11 52155366 52155582 -69688274 - ID_B1 SINE B4 -2 222 3 4 982 445 186 34 2 chr11 52155583 52155686 -69688170 - B1F SINE Alu -1 119 14 4 982 307 247 64 53 chr11 52155609 52155703 -69688153 - ID_B1 SINE B4 -54 170 76 4 982 396 0 0 0 chr11 52155726 52155770 -69688086 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 982 382 229 56 130 chr11 52156195 52156356 -69687500 + B4A SINE B4 76 224 -68 4 982 902 114 7 41 chr11 52156212 52156358 -69687498 + B1_Mur4 SINE Alu 10 150 0 4 982 204 40 0 0 chr11 52156358 52156383 -69687473 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 4 982 386 237 0 13 chr11 52156398 52156475 -69687381 + ID_B1 SINE B4 82 157 -67 4 982 356 263 24 81 chr11 52156475 52156522 -69687334 + PB1D10 SINE Alu 1 117 0 4 982 381 281 40 32 chr11 52156524 52156649 -69687207 + RSINE1 SINE B4 4 129 -36 4 982 251 114 0 22 chr11 52156663 52156708 -69687148 + (TCCCC)n Simple_repeat Simple_repeat 1 44 0 4 982 306 0 0 0 chr11 52157348 52157382 -69686474 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 982 418 270 144 14 chr11 52157391 52157530 -69686326 - RSINE1 SINE B4 -5 160 4 4 982 271 167 56 0 chr11 52157530 52157575 -69686281 - B4A SINE B4 -68 224 177 4 982 279 179 0 0 chr11 52157684 52157751 -69686105 + T-rich Low_complexity Low_complexity 1 67 0 4 982 581 196 71 14 chr11 52157767 52157907 -69685949 - B1_Mur3 SINE Alu 0 149 2 4 982 794 138 13 74 chr11 52157931 52158080 -69685776 - B1_Mur2 SINE Alu 0 149 10 4 982 225 315 140 26 chr11 52158177 52158291 -69685565 - RSINE1 SINE B4 -36 129 3 4 982 690 306 97 19 chr11 52158291 52158357 -69685499 - MLT1D LTR MaLR 0 505 438 4 982 408 288 72 0 chr11 52158357 52158496 -69685360 + B1F1 SINE Alu 1 149 0 4 982 690 306 97 19 chr11 52158496 52158749 -69685107 - MLT1D LTR MaLR -68 437 161 4 982 810 138 69 0 chr11 52158802 52158932 -69684924 + B1_Mur3 SINE Alu 11 149 0 4 982 428 188 12 0 chr11 52159051 52159131 -69684725 + B3A SINE B2 1 81 -117 4 982 997 215 124 108 chr11 52159361 52159684 -69684172 - MTEa LTR MaLR -51 328 1 4 982 633 115 0 0 chr11 52160651 52160747 -69683109 + (TTC)n Simple_repeat Simple_repeat 1 96 0 4 982 1265 97 0 39 chr11 52160747 52160929 -69682927 - B2_Mm2 SINE B2 -19 176 2 4 982 705 211 16 0 chr11 52160931 52161059 -69682797 - B1_Mur1 SINE Alu 0 149 20 4 982 238 333 55 75 chr11 52160935 52161081 -69682775 - B4A SINE B4 -67 225 83 4 982 323 275 41 114 chr11 52161093 52161216 -69682640 - PB1D10 SINE Alu -1 116 3 4 982 341 247 13 0 chr11 52161143 52161220 -69682636 - ID_B1 SINE B4 -67 157 80 4 982 315 0 0 0 chr11 52161520 52161555 -69682301 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 982 3288 100 56 37 chr11 52161586 52162020 -69681836 + RLTR11A2 LTR ERVK 1 456 -71 4 982 1490 53 32 0 chr11 52162020 52162209 -69681647 + B2_Mm2 SINE B2 1 195 0 4 982 3288 100 56 37 chr11 52162209 52162291 -69681565 + RLTR11A2 LTR ERVK 457 527 0 4 982 1198 228 5 0 chr11 52162312 52162527 -69681329 - B3 SINE B2 0 216 1 4 982 189 0 0 0 chr11 52162542 52162563 -69681293 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 982 516 207 17 43 chr11 52162565 52162681 -69681175 - PB1D9 SINE Alu -6 114 2 4 982 242 209 80 30 chr11 52162728 52162810 -69681046 + PB1D10 SINE Alu 34 120 0 4 982 236 243 189 0 chr11 52162843 52162917 -69680939 + PB1 SINE Alu 2 89 -38 4 982 631 245 70 21 chr11 52163237 52163379 -69680477 + B1_Mur1 SINE Alu 1 149 0 4 982 215 197 30 15 chr11 52163381 52163448 -69680408 + A-rich Low_complexity Low_complexity 4 71 0 4 982 420 202 263 0 chr11 52163457 52163556 -69680300 - ID_B1 SINE B4 -6 218 94 4 982 576 245 35 14 chr11 52163562 52163707 -69680149 - B1F SINE Alu -1 148 1 4 982 1129 167 97 238 chr11 52163748 52164181 -69679675 - ORR1D1 LTR MaLR 0 374 3 4 982 407 92 15 0 chr11 52164333 52164398 -69679458 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 4 982 276 77 0 0 chr11 52164521 52164560 -69679296 + (CGGGG)n Simple_repeat Simple_repeat 1 39 0 4 982 240 35 0 0 chr11 52164982 52165011 -69678845 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 982 525 204 6 88 chr11 52165955 52166131 -69677725 + ID_B1 SINE B4 3 221 -3 4 982 252 22 67 0 chr11 52166131 52166176 -69677680 + (CAA)n Simple_repeat Simple_repeat 2 49 0 4 982 776 195 0 0 chr11 52166186 52166314 -69677542 + B1_Mur2 SINE Alu 22 149 0 4 982 209 33 33 0 chr11 52166364 52166394 -69677462 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 982 1080 58 66 0 chr11 52166402 52166539 -69677317 - B1_Mus2 SINE Alu 0 147 2 4 983 441 0 0 0 chr11 52166721 52166770 -69677086 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 983 932 119 0 40 chr11 52166999 52167148 -69676708 - B1_Mur2 SINE Alu -6 143 1 4 983 251 272 26 104 chr11 52167049 52167164 -69676692 + YREP_Mm Unknown Unknown 222 327 -1485 4 983 235 305 84 19 chr11 52167223 52167330 -69676526 - B3 SINE B2 -102 114 1 4 983 293 82 5 0 chr11 52167333 52167383 -69676473 - PB1D7 SINE Alu -9 111 61 4 983 1444 236 71 8 chr11 52167524 52167878 -69675978 + MTEb LTR MaLR 4 379 0 4 983 829 115 78 21 chr11 52167943 52168085 -69675771 - B1_Mur4 SINE Alu 0 150 1 4 983 307 246 27 14 chr11 52168088 52168162 -69675694 - PB1D10 SINE Alu -1 116 42 4 983 31 26 0 0 chr11 52168182 52168220 -69675636 + AT_rich Low_complexity Low_complexity 1 38 0 4 983 1120 185 25 0 chr11 52168244 52168444 -69675412 + B3 SINE B2 11 215 -1 4 983 1304 73 83 11 chr11 52168475 52168637 -69675219 + B2_Mm2 SINE B2 1 177 -18 4 983 237 65 0 0 chr11 52168637 52168668 -69675188 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 983 1304 73 83 11 chr11 52168668 52168685 -69675171 + B2_Mm2 SINE B2 178 193 -2 4 983 1012 186 83 0 chr11 52168838 52169031 -69674825 - B3 SINE B2 0 216 8 4 983 269 311 26 33 chr11 52169056 52169209 -69674647 + L1MA10 LINE L1 6177 6328 -6 4 983 781 212 81 18 chr11 52169212 52169354 -69674502 - B3A SINE B2 -1 215 67 4 983 288 0 0 0 chr11 52169354 52169386 -69674470 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 983 781 201 85 6 chr11 52169386 52169452 -69674404 - B3A SINE B2 -120 78 1 4 983 976 64 0 0 chr11 52169478 52169603 -69674253 + B1_Mus1 SINE Alu 24 148 0 4 983 394 273 66 78 chr11 52169618 52169647 -69674209 + B4 SINE B4 68 189 -103 4 983 741 151 15 31 chr11 52169647 52169777 -69674079 + B1_Mur4 SINE Alu 22 149 -1 4 983 792 251 9 103 chr11 52169779 52169992 -69673864 + B3 SINE B2 3 195 -21 4 983 1549 58 16 0 chr11 52170061 52170250 -69673606 - B2_Mm1t SINE B2 0 193 2 4 983 342 326 33 0 chr11 52170250 52170342 -69673514 + PB1D7 SINE Alu 19 113 -7 5 983 348 300 0 0 chr11 52170567 52170637 -69673219 + RSINE1 SINE B4 62 131 -34 5 983 4724 36 13 2 chr11 52170637 52171191 -69672665 + LTRIS2 LTR ERV1 5 564 0 5 983 21 0 0 0 chr11 52171210 52171231 -69672625 + AT_rich Low_complexity Low_complexity 1 21 0 5 983 516 163 12 0 chr11 52171286 52171372 -69672484 - ID_B1 SINE B4 0 224 138 5 983 376 273 130 16 chr11 52171372 52171409 -69672447 - B1F SINE Alu 0 149 13 5 983 882 52 0 0 chr11 52171525 52171641 -69672215 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 5 983 243 0 0 0 chr11 52172536 52172563 -69671293 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 983 266 283 136 42 chr11 52172740 52172858 -69670998 + RMER15 LTR ERVL 433 561 -14 5 983 1112 68 0 33 chr11 52172948 52173099 -69670757 + B1_Mus1 SINE Alu 2 147 -1 5 983 242 66 48 32 chr11 52173104 52173167 -69670689 + (CAAAAA)n Simple_repeat Simple_repeat 4 67 0 5 983 242 306 19 0 chr11 52174544 52174652 -69669204 + (CCG)n Simple_repeat Simple_repeat 1 110 0 5 983 220 292 35 70 chr11 52175475 52175562 -69668294 + MIRb SINE MIR 118 199 -63 5 983 24 0 0 0 chr11 52175660 52175684 -69668172 + AT_rich Low_complexity Low_complexity 1 24 0 5 983 181 289 0 0 chr11 52176076 52176121 -69667735 + MIRm SINE MIR 230 274 -2 5 983 418 192 14 0 chr11 52176182 52176255 -69667601 - B3A SINE B2 -95 103 30 5 983 217 0 29 29 chr11 52176256 52176290 -69667566 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 983 284 56 0 0 chr11 52176290 52176326 -69667530 - B1_Mur4 SINE Alu -9 141 106 5 983 1422 74 11 0 chr11 52176348 52176537 -69667319 - B2_Mm1a SINE B2 0 193 3 5 983 252 0 0 0 chr11 52177340 52177368 -69666488 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 5 983 826 220 96 6 chr11 52177952 52178130 -69665726 + ID_B1 SINE B4 22 215 -9 5 983 413 219 83 37 chr11 52178032 52178141 -69665715 + B1F SINE Alu 35 148 -1 5 983 829 100 27 128 chr11 52178146 52178295 -69665561 + B1_Mur4 SINE Alu 11 144 -6 5 983 223 167 0 0 chr11 52178899 52178941 -69664915 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 983 1270 98 5 49 chr11 52179051 52179255 -69664601 - B2_Mm2 SINE B2 0 195 1 5 983 948 241 10 19 chr11 52179270 52179477 -69664379 - B3 SINE B2 -11 205 1 5 983 870 228 60 30 chr11 52180235 52180434 -69663422 - B3 SINE B2 -10 206 2 5 983 378 228 303 0 chr11 52180448 52180593 -69663263 - B3A SINE B2 -8 190 2 5 983 249 108 0 0 chr11 52180862 52180899 -69662957 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 5 983 280 129 0 101 chr11 52180906 52180975 -69662881 - L1Md_F2 LINE L1 -2 6580 6519 5 983 195 42 0 0 chr11 52180975 52180999 -69662857 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 5 983 518 82 0 0 chr11 52181004 52181077 -69662779 - L1Md_F2 LINE L1 -112 6470 6398 5 983 620 180 18 18 chr11 52181087 52181200 -69662656 - PB1D9 SINE Alu -7 113 1 5 983 366 293 89 8 chr11 52181272 52181396 -69662460 - ID_B1 SINE B4 -5 219 86 5 983 186 43 0 0 chr11 52181867 52181890 -69661966 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 5 983 186 43 0 0 chr11 52181981 52182004 -69661852 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 983 282 171 188 50 chr11 52182139 52182219 -69661637 - B3 SINE B2 -125 91 1 5 983 1056 215 23 9 chr11 52182247 52182468 -69661388 - ID_B1 SINE B4 0 224 1 5 983 681 272 12 19 chr11 52182551 52182712 -69661144 + RSINE1 SINE B4 3 162 -3 5 983 189 107 0 0 chr11 52183261 52183289 -69660567 + (T)n Simple_repeat Simple_repeat 1 28 0 5 983 577 208 0 0 chr11 52183485 52183586 -69660270 + ID_B1 SINE B4 124 224 0 5 983 239 309 53 111 chr11 52183618 52183650 -69660206 + B2_Mm2 SINE B2 14 39 -156 5 983 180 0 0 0 chr11 52183650 52183670 -69660186 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 983 499 263 21 56 chr11 52183670 52183826 -69660030 + B3A SINE B2 40 198 0 5 983 232 273 167 43 chr11 52184010 52184148 -69659708 - RSINE1 SINE B4 0 165 11 5 983 643 227 0 0 chr11 52184031 52184150 -69659706 - B3 SINE B2 -90 126 8 5 983 889 173 0 28 chr11 52184953 52185096 -69658760 - B1_Mur4 SINE Alu -9 141 3 5 983 908 241 56 0 chr11 52185128 52185323 -69658533 + ID_B1 SINE B4 4 209 -15 5 983 222 359 16 0 chr11 52185701 52185765 -69658091 - ID4_ SINE ID -18 65 1 5 983 1503 44 39 0 chr11 52185775 52185957 -69657899 - B2_Mm2 SINE B2 -6 189 1 5 983 709 190 273 12 chr11 52185964 52186129 -69657727 - B3 SINE B2 -8 208 1 5 983 655 221 88 14 chr11 52186179 52186326 -69657530 + B3 SINE B2 23 180 -36 5 983 708 206 36 20 chr11 52186378 52186564 -69657292 + B3 SINE B2 1 189 -6 5 983 954 122 19 52 chr11 52186564 52186719 -69657137 + B1_Mur4 SINE Alu 1 150 0 5 983 381 22 0 0 chr11 52186771 52186817 -69657039 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 983 393 283 93 40 chr11 52186820 52186971 -69656885 - RSINE1 SINE B4 -5 160 2 5 983 426 151 0 0 chr11 52187000 52187073 -69656783 + CT-rich Low_complexity Low_complexity 4 76 0 5 983 1213 54 0 0 chr11 52187079 52187226 -69656630 - B1_Mus2 SINE Alu 0 147 1 5 983 201 183 87 40 chr11 52187509 52187611 -69656245 - L2b LINE L2 -1 3425 3311 5 983 265 255 160 0 chr11 52188280 52188374 -69655482 - BC1_Mm scRNA scRNA -43 109 1 5 983 471 263 8 34 chr11 52188782 52188900 -69654956 - PB1D7 SINE Alu -5 115 1 5 983 909 192 33 51 chr11 52188939 52189153 -69654703 - B3 SINE B2 -6 210 1 5 983 267 89 0 0 chr11 52189162 52189194 -69654662 + (T)n Simple_repeat Simple_repeat 1 32 0 5 983 1148 88 7 0 chr11 52189194 52189341 -69654515 - B1_Mus1 SINE Alu 0 148 1 5 983 267 89 0 0 chr11 52189341 52189353 -69654503 + (T)n Simple_repeat Simple_repeat 1 12 0 5 983 831 172 22 0 chr11 52189373 52189507 -69654349 - B1_Mur4 SINE Alu -5 145 9 5 983 271 271 45 34 chr11 52190303 52190391 -69653465 + PB1D10 SINE Alu 29 117 0 5 983 379 130 13 7 chr11 52190526 52190622 -69653234 - B2_Mm2 SINE B2 -14 181 47 5 983 1271 102 23 0 chr11 52190666 52190842 -69653014 - B2_Mm2 SINE B2 -14 181 2 5 983 850 282 31 50 chr11 52190891 52191185 -69652671 - ID_B1 SINE B4 0 292 5 5 983 781 125 26 71 chr11 52191697 52191852 -69652004 - B1_Mur3 SINE Alu 0 149 2 5 983 210 71 0 0 chr11 52191953 52191981 -69651875 + (T)n Simple_repeat Simple_repeat 1 28 0 5 983 322 303 112 24 chr11 52191985 52192005 -69651851 - ID_B1 SINE B4 -88 136 1 5 983 618 162 57 0 chr11 52192005 52192110 -69651746 - B3A SINE B2 -87 111 1 5 983 256 318 0 61 chr11 52192115 52192229 -69651627 - L1MC4a LINE L1 -3 7879 7773 5 983 183 42 0 0 chr11 52192534 52192558 -69651298 + (T)n Simple_repeat Simple_repeat 1 24 0 5 983 858 291 90 13 chr11 52192832 52193299 -69650557 - L1MC4a LINE L1 -218 7664 7162 5 983 788 87 94 16 chr11 52193312 52193440 -69650416 - B1_Mus1 SINE Alu 0 148 11 5 983 911 199 18 70 chr11 52193514 52193574 -69650282 - B3 SINE B2 0 216 166 5 983 222 37 0 0 chr11 52193574 52193601 -69650255 + (TATG)n Simple_repeat Simple_repeat 2 28 0 5 983 911 199 18 70 chr11 52193601 52193767 -69650089 - B3 SINE B2 -51 165 2 5 983 306 0 0 0 chr11 52193813 52193847 -69650009 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 983 602 260 26 13 chr11 52193862 52194014 -69649842 - RSINE1 SINE B4 -10 155 2 5 983 256 304 140 29 chr11 52194016 52194294 -69649562 - L1MC4a LINE L1 -839 7043 6735 5 983 495 198 10 0 chr11 52194773 52194869 -69648987 - ID_B1 SINE B4 -1 223 127 5 983 376 182 15 0 chr11 52194890 52194956 -69648900 - PB1D10 SINE Alu -3 114 48 5 983 512 218 19 29 chr11 52194959 52195063 -69648793 - RSINE1 SINE B4 -60 105 3 5 983 247 299 11 65 chr11 52195191 52195284 -69648572 - L1MC5 LINE L1 -1134 6827 6740 5 983 820 139 64 28 chr11 52195512 52195653 -69648203 + B1_Mus1 SINE Alu 3 148 0 5 983 916 136 218 17 chr11 52195805 52195984 -69647872 - B3 SINE B2 0 216 2 5 983 472 254 20 92 chr11 52196038 52196190 -69647666 - B4A SINE B4 -150 142 2 5 983 569 227 133 16 chr11 52196482 52196670 -69647186 - B3 SINE B2 -6 210 1 5 983 1695 21 5 0 chr11 52196802 52196994 -69646862 - B2_Mm1a SINE B2 0 193 1 5 983 223 281 63 82 chr11 52197047 52197206 -69646650 - MIRm SINE MIR -36 240 85 5 983 1057 201 247 22 chr11 52197598 52197873 -69645983 - ORR1D1 LTR MaLR 0 374 38 5 983 522 239 60 23 chr11 52198165 52198298 -69645558 + B3A SINE B2 1 138 -60 5 983 302 235 0 69 chr11 52198510 52198528 -69645328 - RSINE1 SINE B4 0 165 150 5 983 222 91 0 0 chr11 52198528 52198561 -69645295 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 5 983 302 235 0 69 chr11 52198561 52198629 -69645227 - RSINE1 SINE B4 -16 149 85 5 983 642 253 24 30 chr11 52198838 52198853 -69645003 - B3 SINE B2 -40 176 164 5 983 444 67 0 0 chr11 52198853 52198913 -69644943 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 983 719 225 20 1 chr11 52198913 52199064 -69644792 - B3A SINE B2 -53 163 11 5 983 582 152 170 0 chr11 52199342 52199454 -69644402 - B1_Mur1 SINE Alu -7 142 12 5 983 272 194 26 118 chr11 52199401 52199477 -69644379 - B4A SINE B4 -142 150 82 5 983 935 131 0 0 chr11 52199508 52199638 -69644218 - B1_Mus1 SINE Alu 0 148 19 5 983 395 294 7 105 chr11 52199543 52199661 -69644195 - MT2B LTR ERVL -337 264 160 5 983 1443 48 0 46 chr11 52199661 52199858 -69643998 - B2_Mm1a SINE B2 -4 189 2 5 983 395 294 7 105 chr11 52199858 52199891 -69643965 - MT2B LTR ERVL -442 159 128 5 983 243 244 108 32 chr11 52200077 52200170 -69643686 + BC1_Mm scRNA scRNA 3 102 -50 6 983 508 201 262 49 chr11 52200170 52200353 -69643503 + ID_B1 SINE B4 3 224 0 6 983 249 33 0 0 chr11 52201474 52201504 -69642352 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 983 200 238 0 0 chr11 52202612 52202654 -69641202 + T-rich Low_complexity Low_complexity 1 42 0 6 983 448 245 277 0 chr11 52203016 52203171 -69640685 + B3A SINE B2 1 198 0 6 983 339 202 63 0 chr11 52203256 52203335 -69640521 + Lx8 LINE L1 7159 7242 -231 6 983 322 292 72 59 chr11 52203335 52203488 -69640368 - B3A SINE B2 -37 161 7 6 983 1303 232 86 27 chr11 52203543 52203879 -69639977 + ORR1D2 LTR MaLR 7 362 -8 6 983 541 315 112 38 chr11 52203882 52204169 -69639687 - MLT1E3 LTR MaLR -155 469 162 6 983 758 165 113 0 chr11 52204259 52204392 -69639464 - B1_Mus1 SINE Alu 0 148 1 6 983 243 88 0 0 chr11 52204392 52204426 -69639430 + (T)n Simple_repeat Simple_repeat 1 34 0 6 983 1284 27 0 0 chr11 52204426 52204572 -69639284 - B1_Mus2 SINE Alu 0 147 2 6 983 1685 31 0 0 chr11 52204600 52204793 -69639063 - B2_Mm1a SINE B2 0 193 1 6 983 1206 70 45 34 chr11 52204810 52204987 -69638869 - B2_Mm2 SINE B2 -14 181 3 6 983 1277 171 19 0 chr11 52205020 52205231 -69638625 - B3 SINE B2 -1 215 1 6 983 481 285 32 0 chr11 52205269 52205392 -69638464 - RSINE1 SINE B4 -29 136 10 6 983 2171 190 280 14 chr11 52205466 52206048 -69637808 + RMER19A LTR ERVK 1 737 0 6 983 291 361 67 0 chr11 52206112 52206231 -69637625 - RSINE1 SINE B4 -8 157 31 6 983 1452 78 5 0 chr11 52206358 52206549 -69637307 + B2_Mm1a SINE B2 1 192 -1 6 983 690 240 34 0 chr11 52206761 52206907 -69636949 + B3 SINE B2 1 151 -65 6 983 2256 63 34 115 chr11 52207100 52207400 -69636456 + ORR1A2 LTR MaLR 1 287 -40 6 983 477 0 0 0 chr11 52207400 52207453 -69636403 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 983 2256 63 34 115 chr11 52207453 52207508 -69636348 + ORR1A2 LTR MaLR 288 327 0 6 983 497 30 30 0 chr11 52207929 52207995 -69635861 + (TTTC)n Simple_repeat Simple_repeat 4 71 0 6 983 686 101 0 0 chr11 52208018 52208117 -69635739 - B1_Mus1 SINE Alu -12 136 38 6 983 286 185 11 110 chr11 52208037 52208128 -69635728 - RLTR25B LTR ERVK -516 512 431 6 983 2973 57 16 13 chr11 52208472 52208849 -69635007 + L1_Mus1 LINE L1 6190 6567 0 6 983 290 174 0 0 chr11 52208872 52208918 -69634938 + ID_B1 SINE B4 177 222 -2 6 983 689 248 25 6 chr11 52208925 52209087 -69634769 + B3A SINE B2 1 165 -33 6 983 902 176 7 0 chr11 52209137 52209279 -69634577 - B1_Mur3 SINE Alu -6 143 1 6 983 984 207 16 37 chr11 52209298 52209489 -69634367 - B3 SINE B2 -29 187 1 6 983 607 259 73 28 chr11 52209527 52209706 -69634150 - B3 SINE B2 -15 201 15 6 983 189 0 0 0 chr11 52209791 52209812 -69634044 + (T)n Simple_repeat Simple_repeat 1 21 0 6 983 22 0 0 0 chr11 52210023 52210045 -69633811 + GC_rich Low_complexity Low_complexity 1 22 0 6 983 213 262 79 32 chr11 52211273 52211336 -69632520 + B3A SINE B2 92 157 -41 6 983 288 0 0 0 chr11 52211350 52211382 -69632474 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 983 1168 75 0 0 chr11 52211414 52211561 -69632295 - B1_Mus1 SINE Alu -1 147 1 6 983 253 262 0 71 chr11 52212105 52212175 -69631681 - RSINE1 SINE B4 -42 123 59 6 983 807 199 7 20 chr11 52212260 52212409 -69631447 + B1_Mur4 SINE Alu 3 149 -1 6 983 571 229 127 6 chr11 52212420 52212431 -69631425 - B3A SINE B2 -19 179 169 6 983 197 108 27 0 chr11 52212431 52212468 -69631388 + (CCTG)n Simple_repeat Simple_repeat 1 38 0 6 983 571 229 127 6 chr11 52212468 52212614 -69631242 - B3A SINE B2 -30 168 3 6 983 209 283 177 35 chr11 52212620 52212812 -69631044 - L2 LINE L2 -569 2850 2619 6 983 285 98 0 0 chr11 52212812 52212853 -69631003 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 983 209 283 177 35 chr11 52212853 52212920 -69630936 - L2 LINE L2 -801 2618 2554 6 983 525 246 54 117 chr11 52212945 52213187 -69630669 - L1MD LINE L1 -826 5320 5103 6 983 1196 54 0 13 chr11 52213187 52213336 -69630520 - B1_Mus2 SINE Alu 0 147 1 6 983 525 246 54 117 chr11 52213336 52213479 -69630377 - L1MD LINE L1 -1044 5102 4959 6 983 192 372 141 24 chr11 52213852 52214100 -69629756 - L2 LINE L2 -2008 1411 1135 6 983 271 220 0 17 chr11 52214592 52214652 -69629204 - ID_B1 SINE B4 0 224 166 6 983 1315 61 0 0 chr11 52214816 52214981 -69628875 - B2_Mm2 SINE B2 -30 165 1 6 983 351 0 0 0 chr11 52216038 52216077 -69627779 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 983 578 51 0 13 chr11 52216077 52216155 -69627701 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 983 830 163 21 7 chr11 52217276 52217418 -69626438 - B1_Mur2 SINE Alu -5 144 1 6 983 516 271 93 51 chr11 52217542 52217756 -69626100 + ID_B1 SINE B4 2 224 0 6 983 275 329 12 0 chr11 52217778 52217860 -69625996 + B1_Mur4 SINE Alu 7 89 -61 6 983 500 225 81 0 chr11 52217890 52218001 -69625855 + B3 SINE B2 3 122 -94 6 983 270 0 0 0 chr11 52218383 52218413 -69625443 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 983 404 211 124 9 chr11 52218427 52218532 -69625324 - B3A SINE B2 -81 117 1 6 983 534 145 170 0 chr11 52218596 52218755 -69625101 - Lx9 LINE L1 -1 7643 7458 6 983 772 163 59 64 chr11 52219171 52219233 -69624623 - Lx9 LINE L1 -174 7470 7415 6 983 203 0 37 0 chr11 52219233 52219260 -69624596 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6 983 1592 28 0 11 chr11 52219260 52219443 -69624413 - B2_Mm1a SINE B2 -12 181 1 6 983 772 163 59 64 chr11 52219443 52219582 -69624274 - Lx9 LINE L1 -230 7414 7270 6 983 1056 113 37 53 chr11 52219612 52219799 -69624057 + B2_Mm1t SINE B2 1 184 -9 6 983 482 212 38 2 chr11 52220976 52221089 -69622767 - PB1D7 SINE Alu -26 123 5 6 983 588 301 32 7 chr11 52221221 52221375 -69622481 + RSINE1 SINE B4 4 161 -4 6 983 232 260 38 94 chr11 52221691 52221797 -69622059 - MLT1H-int LTR MaLR -542 867 768 6 983 249 241 35 0 chr11 52223265 52223323 -69620533 + (CATG)n Simple_repeat Simple_repeat 2 61 0 6 983 426 171 71 35 chr11 52223729 52223814 -69620042 + URR1B DNA MER1_type 5 92 -133 6 983 1305 79 0 99 chr11 52223814 52223996 -69619860 + B2_Mm2 SINE B2 2 167 -28 6 983 1136 89 0 0 chr11 52223996 52224142 -69619714 - B1_Mus1 SINE Alu -1 147 2 6 983 1305 79 0 99 chr11 52224142 52224170 -69619686 + B2_Mm2 SINE B2 168 191 -4 6 983 777 101 0 162 chr11 52224192 52224346 -69619510 + URR1B DNA MER1_type 97 225 0 6 983 998 213 65 0 chr11 52225279 52225509 -69618347 - Lx9 LINE L1 -272 7372 7128 6 983 2276 118 31 31 chr11 52225513 52225542 -69618314 - ORR1B2 LTR MaLR -8 359 332 6 983 2412 132 18 28 chr11 52225542 52225938 -69617918 + ORR1B1 LTR MaLR 3 394 0 6 983 2276 118 31 31 chr11 52225938 52226267 -69617589 - ORR1B2 LTR MaLR -36 331 1 6 983 589 238 2 55 chr11 52226270 52226511 -69617345 - Lx9 LINE L1 -514 7130 6785 6 983 224 194 161 0 chr11 52226511 52226573 -69617283 - B2_Mm2 SINE B2 -123 72 1 6 983 327 240 108 19 chr11 52226573 52226730 -69617126 - L1M4c LINE L1 -3547 2835 2665 6 983 828 177 153 21 chr11 52226815 52227005 -69616851 + B3 SINE B2 1 215 -1 6 983 564 294 52 0 chr11 52227098 52227234 -69616622 + RSINE1 SINE B4 4 146 -19 6 983 423 0 0 0 chr11 52227243 52227290 -69616566 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 983 849 234 12 65 chr11 52227365 52227571 -69616285 + B3A SINE B2 1 197 -19 6 983 1106 191 43 43 chr11 52227589 52227846 -69616010 + L1VL2 LINE L1 107 363 -5972 6 983 4074 134 1 184 chr11 52227846 52228044 -69615812 + Lx LINE L1 5056 5238 -645 6 983 353 231 17 69 chr11 52228044 52228160 -69615696 + MT2B LTR ERVL 155 264 -337 6 983 906 37 0 0 chr11 52228080 52228188 -69615668 + B1_Mus1 SINE Alu 34 141 -7 6 983 4074 134 1 184 chr11 52228188 52228201 -69615655 + Lx LINE L1 5239 5251 -632 6 983 211 28 56 0 chr11 52228201 52228237 -69615619 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 983 7301 107 11 53 chr11 52228237 52229655 -69614201 + Lx LINE L1 5252 6650 -4 6 983 1068 178 25 0 chr11 52229660 52229857 -69613999 + B3 SINE B2 5 206 -10 6 983 503 255 0 9 chr11 52229897 52230004 -69613852 + PB1D10 SINE Alu 12 117 0 6 983 548 67 0 62 chr11 52230012 52230092 -69613764 + B2_Mm2 SINE B2 2 76 -119 6 983 303 282 0 14 chr11 52230078 52230150 -69613706 - PB1D7 SINE Alu -49 71 1 6 983 391 250 110 45 chr11 52230214 52230369 -69613487 - L1M4c LINE L1 -4870 1514 1350 6 983 520 180 12 8 chr11 52230377 52230479 -69613377 - B1_Mur3 SINE Alu 0 147 51 6 983 295 250 60 40 chr11 52230507 52230657 -69613199 - L1M4c LINE L1 -5050 1334 1182 6 983 813 139 88 0 chr11 52230660 52230797 -69613059 - B1_Mur4 SINE Alu -1 149 1 6 983 223 191 0 0 chr11 52230800 52230842 -69613014 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 983 466 95 0 0 chr11 52230868 52230931 -69612925 + B1_Mur3 SINE Alu 75 137 -12 6 983 342 0 0 0 chr11 52230931 52230969 -69612887 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 983 230 200 22 0 chr11 52230982 52231027 -69612829 + (TATG)n Simple_repeat Simple_repeat 1 46 0 6 983 568 275 24 30 chr11 52231027 52231192 -69612664 - RSINE1 SINE B4 0 165 2 6 983 953 209 80 28 chr11 52231287 52231499 -69612357 - ID_B1 SINE B4 -1 223 1 6 983 937 165 204 0 chr11 52232315 52232491 -69611365 - B3 SINE B2 -4 212 1 6 983 646 152 184 0 chr11 52232614 52232739 -69611117 + B1_Mus1 SINE Alu 1 148 0 6 983 242 29 29 0 chr11 52232744 52232779 -69611077 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 6 983 567 295 39 50 chr11 52233051 52233265 -69610591 - B3A SINE B2 0 216 5 6 983 2214 116 34 6 chr11 52235417 52235737 -69608119 + ORR1A4 LTR MaLR 1 329 0 6 983 343 300 11 0 chr11 52236220 52236310 -69607546 + RMER15 LTR ERVL 371 461 -114 6 983 270 0 0 0 chr11 52236314 52236344 -69607512 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 983 315 0 0 0 chr11 52236344 52236378 -69607478 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 983 416 230 0 0 chr11 52236654 52236728 -69607128 + RSINE1 SINE B4 50 123 -42 6 983 323 59 0 73 chr11 52237220 52237275 -69606581 - B2_Mm2 SINE B2 -48 147 97 7 983 722 193 21 21 chr11 52237454 52237597 -69606259 + B1F1 SINE Alu 1 143 -6 7 983 587 242 47 24 chr11 52237824 52237951 -69605905 - RSINE1 SINE B4 -33 132 3 7 983 599 208 130 111 chr11 52238349 52238362 -69605494 - B3A SINE B2 -33 165 153 7 983 1269 86 0 0 chr11 52238362 52238542 -69605314 + (TG)n Simple_repeat Simple_repeat 1 181 -363 7 983 1269 86 0 0 chr11 52238547 52238906 -69604950 + (TG)n Simple_repeat Simple_repeat 182 544 0 7 983 599 208 130 111 chr11 52238906 52239003 -69604853 - B3A SINE B2 -50 148 41 7 983 1158 73 53 43 chr11 52239003 52239190 -69604666 - B2_Mm2 SINE B2 -5 190 2 7 983 599 208 130 111 chr11 52239190 52239231 -69604625 - B3A SINE B2 -158 40 1 7 983 24 0 0 0 chr11 52239274 52239298 -69604558 + AT_rich Low_complexity Low_complexity 1 24 0 7 983 549 140 237 0 chr11 52239304 52239418 -69604438 + B1_Mus1 SINE Alu 2 142 -6 7 983 286 149 40 118 chr11 52240454 52240530 -69603326 + MT2B LTR ERVL 170 239 -362 7 983 508 131 141 10 chr11 52240466 52240568 -69603288 + B1_Mur1 SINE Alu 21 119 -1 7 983 653 193 8 8 chr11 52240721 52240841 -69603015 + MLT2B4 LTR ERVL 1 120 -436 7 983 258 299 60 27 chr11 52240808 52240944 -69602912 - MLT2B4 LTR ERVL -38 522 296 7 983 318 224 9 93 chr11 52240945 52241053 -69602803 - RLTR25B LTR ERVK -489 539 441 7 983 705 93 0 0 chr11 52240961 52241058 -69602798 - B1_Mus1 SINE Alu -16 132 36 7 983 339 174 80 5 chr11 52241071 52241155 -69602701 - MLT2B4 LTR ERVL -333 223 134 7 983 658 230 52 0 chr11 52241173 52241308 -69602548 + RSINE1 SINE B4 3 144 -21 7 983 544 152 8 8 chr11 52241348 52241481 -69602375 + (CA)n Simple_repeat Simple_repeat 1 133 0 7 983 217 118 0 0 chr11 52241482 52241516 -69602340 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 7 983 482 202 6 0 chr11 52241521 52241689 -69602167 + (CA)n Simple_repeat Simple_repeat 2 170 0 7 983 840 250 17 0 chr11 52241707 52241879 -69601977 - B3 SINE B2 -41 175 1 7 983 948 121 7 0 chr11 52241960 52242101 -69601755 - B1_Mur4 SINE Alu 0 150 9 7 983 1044 212 49 0 chr11 52242118 52242321 -69601535 - B3 SINE B2 0 216 4 7 983 2987 36 8 6 chr11 52242464 52242826 -69601030 - L1Md_F3 LINE L1 -2 6582 6220 7 983 302 0 0 26 chr11 52243279 52243318 -69600538 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 983 507 73 0 0 chr11 52243761 52243829 -69600027 + (TCC)n Simple_repeat Simple_repeat 3 70 0 7 983 982 234 18 9 chr11 52243835 52244055 -69599801 - ID_B1 SINE B4 0 224 3 7 983 203 234 43 0 chr11 52244332 52244379 -69599477 + L2a LINE L2 3354 3402 -24 7 983 274 344 0 10 chr11 52245001 52245098 -69598758 + GA-rich Low_complexity Low_complexity 1 96 0 7 983 328 290 75 61 chr11 52245265 52245412 -69598444 - MamRep4096 DNA hAT? -272 154 6 7 983 1806 190 85 5 chr11 52245417 52245792 -69598064 + MTD LTR MaLR 1 405 -14 7 983 350 337 23 47 chr11 52246086 52246287 -69597569 - L1MC4a LINE L1 -2034 5848 5652 7 983 189 0 0 0 chr11 52246303 52246324 -69597532 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 7 983 405 312 27 27 chr11 52246383 52246531 -69597325 - B4A SINE B4 -99 193 46 7 983 203 308 103 58 chr11 52246601 52246756 -69597100 - MIR SINE MIR -48 214 53 7 983 276 136 23 0 chr11 52247211 52247255 -69596601 - MTC LTR MaLR 0 419 375 7 983 339 25 0 0 chr11 52247260 52247300 -69596556 + (A)n Simple_repeat Simple_repeat 1 40 0 7 983 2277 126 16 19 chr11 52247307 52247670 -69596186 - MTC LTR MaLR -44 377 16 7 983 320 350 10 0 chr11 52247921 52248021 -69595835 + MLT1A LTR MaLR 42 142 -325 7 983 1157 202 237 14 chr11 52248073 52248364 -69595492 + ORR1E LTR MaLR 2 357 -2 7 983 248 327 94 6 chr11 52249302 52249462 -69594394 + L2a LINE L2 3251 3424 -2 7 983 300 182 0 0 chr11 52249687 52249775 -69594081 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 983 600 256 37 43 chr11 52249779 52249942 -69593914 - RSINE1 SINE B4 -2 163 2 7 983 1359 252 72 25 chr11 52250208 52250570 -69593286 + MTEb LTR MaLR 1 379 0 7 983 659 167 0 9 chr11 52250574 52250689 -69593167 + B1_Mur1 SINE Alu 35 148 -1 7 983 463 345 76 27 chr11 52251605 52251867 -69591989 + MLT1A LTR MaLR 100 374 0 7 983 229 300 130 0 chr11 52252131 52252231 -69591625 - L2a LINE L2 -40 3386 3274 7 983 734 153 8 24 chr11 52252243 52252370 -69591486 + RSINE1 SINE B4 3 127 -38 7 983 518 271 195 37 chr11 52252459 52252674 -69591182 - ORR1E LTR MaLR -8 351 103 7 983 278 26 0 25 chr11 52252819 52252859 -69590997 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 983 457 216 96 48 chr11 52252859 52253005 -69590851 + MTE2a LTR MaLR 15 167 -212 7 983 2310 129 126 3 chr11 52253012 52253385 -69590471 - MTC LTR MaLR 0 421 3 7 983 243 0 0 0 chr11 52253399 52253426 -69590430 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 7 983 613 131 0 9 chr11 52253426 52253524 -69590332 - RMER1B Other Other -11 1055 958 7 983 222 116 0 0 chr11 52253609 52253652 -69590204 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 983 378 243 133 19 chr11 52253652 52253757 -69590099 - RSINE1 SINE B4 -46 119 3 7 983 295 243 73 99 chr11 52253757 52253910 -69589946 + YREP_Mm Unknown Unknown 149 296 -1516 7 983 656 276 7 0 chr11 52253791 52253936 -69589920 - ID_B1 SINE B4 -4 220 75 7 983 404 229 0 0 chr11 52255124 52255207 -69588649 - ID2 SINE ID 0 83 1 7 983 213 185 30 15 chr11 52255219 52255273 -69588583 + CT-rich Low_complexity Low_complexity 13 68 0 7 983 1638 26 0 30 chr11 52255273 52255471 -69588385 - B2_Mm1a SINE B2 0 193 2 7 983 336 267 29 17 chr11 52255471 52255513 -69588343 + polypyrimidine Low_complexity Low_complexity 1 42 0 7 983 1067 127 0 0 chr11 52255513 52255663 -69588193 - B1_Mur4 SINE Alu 0 150 1 7 983 336 296 29 17 chr11 52255663 52255806 -69588050 + CT-rich Low_complexity Low_complexity 4 147 0 7 983 321 288 0 0 chr11 52256255 52256380 -69587476 + (TG)n Simple_repeat Simple_repeat 2 126 0 7 983 933 198 121 0 chr11 52256458 52256640 -69587216 - B3 SINE B2 -12 204 1 7 983 543 31 0 0 chr11 52256816 52256881 -69586975 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 983 419 312 73 103 chr11 52257273 52257389 -69586467 - B4A SINE B4 0 292 2 7 983 1027 178 5 22 chr11 52257389 52257573 -69586283 - B3A SINE B2 -16 182 2 7 983 184 30 29 29 chr11 52257579 52257613 -69586243 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 983 386 312 37 25 chr11 52257614 52257773 -69586083 - B4A SINE B4 -77 215 1 7 983 655 234 0 0 chr11 52259005 52259129 -69584727 - B1F SINE Alu -21 128 5 7 983 492 219 37 37 chr11 52259156 52259265 -69584591 - PB1D10 SINE Alu -5 112 4 7 983 841 211 28 11 chr11 52259282 52259464 -69584392 - RMER5 LTR ERV1 -1 533 349 7 983 192 77 0 0 chr11 52259492 52259518 -69584338 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 7 983 480 188 78 10 chr11 52259520 52259622 -69584234 - B1_Mus1 SINE Alu -5 143 35 7 983 566 308 126 41 chr11 52259633 52259951 -69583905 - RMER5 LTR ERV1 -175 359 15 7 983 763 102 18 9 chr11 52260087 52260196 -69583660 - PB1D9 SINE Alu -9 111 2 7 983 396 314 105 0 chr11 52260228 52260352 -69583504 + RSINE1 SINE B4 3 139 -26 7 983 574 212 65 112 chr11 52261121 52261291 -69582565 + RSINE1 SINE B4 4 165 0 7 983 777 244 99 0 chr11 52261457 52261658 -69582198 - ID_B1 SINE B4 -2 222 2 7 983 846 286 97 93 chr11 52262313 52262881 -69580975 - RMER13B LTR ERVK -114 794 183 7 983 1245 109 11 27 chr11 52262881 52263069 -69580787 - B2_Mm1t SINE B2 -6 187 3 7 983 845 286 97 93 chr11 52263069 52263178 -69580678 - RMER13B LTR ERVK -678 182 86 7 983 213 39 0 0 chr11 52263190 52263216 -69580640 + (T)n Simple_repeat Simple_repeat 1 26 0 7 983 1060 80 0 0 chr11 52263216 52263353 -69580503 - B1_Mus1 SINE Alu 0 148 12 7 983 264 30 0 0 chr11 52263414 52263447 -69580409 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 983 210 143 0 0 chr11 52263449 52263498 -69580358 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 983 1466 249 18 30 chr11 52263509 52263906 -69579950 - Lx8 LINE L1 -155 7318 6927 7 983 459 0 0 0 chr11 52264139 52264190 -69579666 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 983 424 159 0 0 chr11 52265202 52265265 -69578591 + ID4 SINE ID 5 67 -16 7 983 978 101 0 0 chr11 52265279 52265437 -69578419 + (CA)n Simple_repeat Simple_repeat 1 158 0 7 983 1309 75 39 22 chr11 52266284 52266462 -69577394 + B2_Mm2 SINE B2 1 181 -14 7 983 200 280 105 13 chr11 52266503 52266579 -69577277 + L2a LINE L2 3249 3331 -95 7 983 599 208 8 31 chr11 52266579 52266708 -69577148 - ID_B1 SINE B4 0 224 99 7 983 202 382 10 19 chr11 52267054 52267158 -69576698 - MIRb SINE MIR -35 233 131 7 983 2202 122 46 9 chr11 52267203 52267549 -69576307 - ORR1B2 LTR MaLR -8 359 1 7 983 315 0 0 0 chr11 52267699 52267734 -69576122 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 983 826 167 182 12 chr11 52267744 52267914 -69575942 - ID_B1 SINE B4 -24 200 2 7 983 1107 314 34 12 chr11 52267926 52268249 -69575607 + MER2 DNA MER2_type 16 345 0 7 983 375 23 0 0 chr11 52268391 52268435 -69575421 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 983 599 316 63 0 chr11 52268435 52268609 -69575247 - B4 SINE B4 -26 266 82 7 983 260 111 0 22 chr11 52268616 52268662 -69575194 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 7 983 1574 112 90 69 chr11 52268668 52268957 -69574899 + ORR1A4 LTR MaLR 1 295 -34 7 983 251 224 133 33 chr11 52268937 52268997 -69574859 - RSINE1 SINE B4 -98 67 2 7 983 268 154 115 0 chr11 52269243 52269295 -69574561 + B3A SINE B2 1 58 -140 7 983 477 0 0 0 chr11 52269323 52269376 -69574480 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 983 477 0 0 0 chr11 52270319 52270372 -69573484 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 8 983 261 282 48 0 chr11 52270372 52270395 -69573461 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 983 783 265 43 34 chr11 52270395 52270602 -69573254 + ID_B1 SINE B4 1 209 -15 8 983 261 282 48 0 chr11 52270602 52270681 -69573175 + (CAAA)n Simple_repeat Simple_repeat 1 83 0 8 983 1074 85 136 24 chr11 52270699 52270868 -69572988 - B2_Mm2 SINE B2 -7 188 1 8 983 183 266 0 45 chr11 52272066 52272133 -69571723 - L2b LINE L2 -224 3151 3088 8 983 378 289 0 0 chr11 52272481 52272630 -69571226 + (TG)n Simple_repeat Simple_repeat 2 150 0 8 983 491 347 11 11 chr11 52272637 52272684 -69571172 + polypyrimidine Low_complexity Low_complexity 135 180 0 8 983 979 170 174 11 chr11 52272684 52272868 -69570988 - B3 SINE B2 0 216 3 8 983 491 347 11 11 chr11 52272868 52272998 -69570858 + polypyrimidine Low_complexity Low_complexity 4 134 0 8 983 890 104 49 0 chr11 52272998 52273161 -69570695 + CT-rich Low_complexity Low_complexity 5 175 0 8 983 300 364 26 26 chr11 52273167 52273322 -69570534 - HAL1-3A_ME LINE L1 -419 2439 2285 8 983 496 272 184 55 chr11 52273329 52273547 -69570309 - B4A SINE B4 -46 246 1 8 983 426 39 0 0 chr11 52274580 52274632 -69569224 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 983 717 270 101 28 chr11 52274677 52274925 -69568931 - B4A SINE B4 -18 274 9 8 983 793 289 30 0 chr11 52275751 52275952 -69567904 + B4 SINE B4 10 216 -76 8 983 373 0 38 19 chr11 52275952 52276005 -69567851 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 983 298 336 72 83 chr11 52276012 52276288 -69567568 + B4 SINE B4 2 274 -18 8 983 633 61 0 0 chr11 52276315 52276397 -69567459 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 983 291 351 0 13 chr11 52276424 52276499 -69567357 + B4 SINE B4 218 291 -1 8 983 213 154 0 0 chr11 52276529 52276568 -69567288 + (CCA)n Simple_repeat Simple_repeat 2 40 0 8 983 229 369 76 15 chr11 52277346 52277544 -69566312 + MIRb SINE MIR 50 259 -9 8 983 4102 131 133 47 chr11 52277805 52278639 -69565217 + RMER17A2 LTR ERVK 1 906 0 8 983 8556 39 0 1 chr11 52278838 52279901 -69563955 + L1_Mus1 LINE L1 5511 6566 -1 8 983 23 0 0 0 chr11 52279901 52279924 -69563932 + AT_rich Low_complexity Low_complexity 1 23 0 8 983 451 294 4 21 chr11 52279926 52280159 -69563697 + L1M2 LINE L1 5255 5483 -817 8 983 1315 207 21 162 chr11 52280190 52280623 -69563233 + MTE2a LTR MaLR 8 379 0 8 983 24 32 0 0 chr11 52280850 52280881 -69562975 + AT_rich Low_complexity Low_complexity 1 31 0 8 983 312 70 0 0 chr11 52281437 52281480 -69562376 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 983 663 284 0 7 chr11 52281618 52281767 -69562089 - RSINE1 SINE B4 -14 151 4 8 983 2221 99 39 12 chr11 52281974 52282310 -69561546 - Lx4A LINE L1 -1 7057 6713 8 983 258 32 0 0 chr11 52282404 52282435 -69561421 + (CAAAT)n Simple_repeat Simple_repeat 1 31 0 8 983 1949 237 158 25 chr11 52282666 52283461 -69560395 + RMER1A Other Other 1 603 -427 8 983 335 285 131 53 chr11 52283459 52283796 -69560060 - L1M4 LINE L1 -1774 4366 4004 8 983 389 191 22 0 chr11 52283797 52283886 -69559970 + CT-rich Low_complexity Low_complexity 2 92 0 8 983 925 283 159 15 chr11 52283886 52284420 -69559436 - L1M4 LINE L1 -2122 4024 3414 8 983 412 241 75 47 chr11 52284437 52284650 -69559206 - L1M3 LINE L1 -1655 4485 4267 8 983 393 300 31 0 chr11 52284724 52284854 -69559002 - L1M3 LINE L1 -1897 4243 4110 8 983 755 234 25 12 chr11 52285038 52285198 -69558658 + B3A SINE B2 36 197 -1 8 983 483 290 78 70 chr11 52285214 52285560 -69558296 + L1MC1 LINE L1 5879 6228 -116 8 983 318 224 14 69 chr11 52285569 52285641 -69558215 + ID4_ SINE ID 9 76 -7 8 983 338 159 14 0 chr11 52285667 52285736 -69558120 + GA-rich Low_complexity Low_complexity 3 72 0 8 983 441 0 0 0 chr11 52285907 52285956 -69557900 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 983 310 275 31 85 chr11 52286047 52286153 -69557703 + MIRb SINE MIR 5 111 -157 8 983 675 299 146 47 chr11 52286161 52286545 -69557311 - MER67A LTR ERV1 -74 469 45 8 983 731 227 0 0 chr11 52286545 52286686 -69557170 + B1_Mur2 SINE Alu 1 141 -8 8 983 675 299 146 47 chr11 52286686 52286725 -69557131 - MER67A LTR ERV1 -499 44 4 8 983 210 37 0 0 chr11 52286785 52286812 -69557044 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 8 983 221 0 0 33 chr11 52287736 52287766 -69556090 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 8 983 668 184 79 22 chr11 52287766 52287895 -69555961 - B1_Mur4 SINE Alu -8 142 4 8 983 400 262 12 0 chr11 52287940 52288024 -69555832 + B1_Mur4 SINE Alu 4 88 -62 8 983 398 103 0 17 chr11 52288335 52288394 -69555462 + B1_Mur1 SINE Alu 74 131 -18 8 983 491 185 32 21 chr11 52288635 52288729 -69555127 - MTC LTR MaLR -326 95 1 8 983 480 272 177 75 chr11 52288729 52289004 -69554852 - MLT1D LTR MaLR -63 442 139 8 983 931 114 15 0 chr11 52289385 52289516 -69554340 + B1_Mus2 SINE Alu 2 134 -13 8 983 513 84 0 0 chr11 52289516 52289587 -69554269 + (CAAA)n Simple_repeat Simple_repeat 1 71 0 8 983 862 171 7 0 chr11 52289792 52289932 -69553924 + B1_Mus2 SINE Alu 7 147 0 8 983 1242 240 50 106 chr11 52290145 52290541 -69553315 + MTE2a LTR MaLR 6 379 0 8 983 1064 173 108 5 chr11 52291089 52291292 -69552564 + URR1B DNA MER1_type 2 225 0 8 983 471 18 0 0 chr11 52291362 52291418 -69552438 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 983 218 374 0 0 chr11 52292725 52292896 -69550960 + (CAG)n Simple_repeat Simple_repeat 3 173 0 8 983 218 325 0 0 chr11 52292911 52293031 -69550825 + (CAG)n Simple_repeat Simple_repeat 3 122 0 8 983 347 315 0 0 chr11 52293145 52293307 -69550549 + (CAG)n Simple_repeat Simple_repeat 3 164 0 8 983 304 302 0 0 chr11 52294255 52294361 -69549495 + G-rich Low_complexity Low_complexity 5 110 0 8 983 1311 100 64 36 chr11 52294977 52295254 -69548602 + Lx4A LINE L1 6722 7058 0 8 983 31 0 0 0 chr11 52295254 52295285 -69548571 + AT_rich Low_complexity Low_complexity 1 31 0 8 983 393 306 19 98 chr11 52295288 52295581 -69548275 + L1MD2 LINE L1 5828 6106 -73 8 983 592 209 42 63 chr11 52295677 52295742 -69548114 - B1_Mur4 SINE Alu 0 150 95 8 983 567 43 0 0 chr11 52295742 52295812 -69548044 + (TA)n Simple_repeat Simple_repeat 1 70 0 8 983 592 212 38 56 chr11 52295812 52295898 -69547958 - B1_Mur4 SINE Alu -56 94 1 8 983 1024 122 0 20 chr11 52295911 52296062 -69547794 - B1_Mus1 SINE Alu 0 148 1 8 983 369 0 0 0 chr11 52296451 52296492 -69547364 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 983 243 290 71 85 chr11 52296609 52296820 -69547036 + RLTR1 LTR ERV1 86 293 -331 8 983 7472 15 2 0 chr11 52296829 52297649 -69546207 - RLTR13B2 LTR ERVK 0 822 1 8 984 397 171 0 0 chr11 52297735 52297805 -69546051 + B2_Mm2 SINE B2 102 171 -24 8 984 339 25 0 0 chr11 52297805 52297845 -69546011 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 984 981 232 234 57 chr11 52297874 52298274 -69545582 - MT2A LTR ERVL -6 595 87 8 984 710 235 0 13 chr11 52298274 52298425 -69545431 - MERVL_2A-int LTR ERVL -544 5217 5069 8 984 443 226 49 0 chr11 52298440 52298542 -69545314 - MERVL_2A-int LTR ERVL -756 5005 4899 8 984 191 82 96 0 chr11 52298556 52298629 -69545227 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 984 351 287 99 21 chr11 52298763 52298955 -69544901 - Lx7 LINE L1 -284 7412 7206 8 984 3330 207 68 19 chr11 52299039 52299759 -69544097 - Lx6 LINE L1 -168 7292 6538 8 984 1152 180 174 66 chr11 52299778 52299958 -69543898 + ORR1D1 LTR MaLR 2 164 -210 8 984 600 14 0 0 chr11 52299958 52300027 -69543829 + (TC)n Simple_repeat Simple_repeat 2 70 0 8 984 1152 180 174 66 chr11 52300027 52300179 -69543677 + ORR1D1 LTR MaLR 165 369 -5 8 984 868 290 34 117 chr11 52300179 52300530 -69543326 + MER74A LTR ERVL 40 361 -197 8 984 1201 234 111 9 chr11 52301424 52301739 -69542117 - ORR1D2 LTR MaLR -9 361 15 8 984 182 191 0 21 chr11 52301927 52301975 -69541881 + GA-rich Low_complexity Low_complexity 3 49 0 8 984 582 289 49 0 chr11 52302503 52302645 -69541211 + B1F SINE Alu 1 149 0 8 984 703 101 17 0 chr11 52302733 52302852 -69541004 + (GA)n Simple_repeat Simple_repeat 1 121 0 8 984 241 286 0 16 chr11 52302852 52302916 -69540940 + GA-rich Low_complexity Low_complexity 2 64 0 8 984 2827 144 53 12 chr11 52303135 52303626 -69540230 + RLTR28 LTR ERVL 1 511 -13 8 984 981 224 60 0 chr11 52303850 52304051 -69539805 + ID_B1 SINE B4 1 213 -11 8 984 314 233 12 0 chr11 52304051 52304137 -69539719 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 8 984 259 200 0 48 chr11 52304339 52304402 -69539454 + MLT1A1 LTR MaLR 311 370 -38 8 984 1348 248 31 39 chr11 52304573 52304955 -69538901 - MTE2a LTR MaLR 0 379 1 8 984 231 322 94 17 chr11 52305123 52305240 -69538616 - LTR81C LTR ERV1? -153 1000 875 8 984 1126 102 0 0 chr11 52306467 52306614 -69537242 - B1_Mus2 SINE Alu 0 147 1 8 984 606 118 0 0 chr11 52307293 52307386 -69536470 + (TTCC)n Simple_repeat Simple_repeat 3 95 0 8 984 212 290 9 0 chr11 52307394 52307501 -69536355 + (TCCA)n Simple_repeat Simple_repeat 4 111 0 8 984 187 343 124 0 chr11 52307824 52307929 -69535927 + MIRb SINE MIR 33 150 -118 8 984 718 214 105 63 chr11 52308515 52308705 -69535151 + B3A SINE B2 1 198 0 8 984 485 298 19 26 chr11 52308822 52309045 -69534811 + B4A SINE B4 2 290 -2 8 984 500 100 12 0 chr11 52309086 52309166 -69534690 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 984 685 243 0 14 chr11 52309642 52309788 -69534068 - B4 SINE B4 -128 164 21 8 984 627 310 46 27 chr11 52309845 52310107 -69533749 + MLT1B LTR MaLR 3 269 -121 8 984 847 227 0 70 chr11 52310400 52310425 -69533431 - B3A SINE B2 0 198 174 8 984 750 150 158 0 chr11 52310425 52310552 -69533304 - B1_Mur3 SINE Alu 0 149 3 9 984 847 227 0 70 chr11 52310552 52310739 -69533117 - B3A SINE B2 -25 173 1 8 984 234 269 0 130 chr11 52311133 52311210 -69532646 + B4A SINE B4 65 131 -161 9 984 628 215 174 59 chr11 52311222 52311495 -69532361 + MTEa LTR MaLR 47 371 -8 9 984 431 222 12 0 chr11 52311496 52311577 -69532279 + PB1 SINE Alu 43 124 -3 9 984 700 199 199 0 chr11 52311590 52311746 -69532110 + B3 SINE B2 2 188 -28 9 984 582 228 49 0 chr11 52312224 52312371 -69531485 - MTEb LTR MaLR -136 243 88 9 984 227 333 44 26 chr11 52312469 52312583 -69531273 - MTEb LTR MaLR -259 120 5 9 984 3246 60 17 2 chr11 52312667 52313088 -69530768 - L1_Mus3 LINE L1 -1 6637 6211 9 984 1573 43 0 0 chr11 52313088 52313273 -69530583 + L1_Mus3 LINE L1 6037 6221 -417 9 984 225 0 0 0 chr11 52313976 52314001 -69529855 + (A)n Simple_repeat Simple_repeat 1 25 0 9 984 677 261 7 0 chr11 52314180 52314318 -69529538 + RSINE1 SINE B4 8 146 -19 9 984 234 91 0 0 chr11 52314318 52314351 -69529505 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 984 209 139 23 0 chr11 52314554 52314597 -69529259 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 984 620 271 96 0 chr11 52314597 52314785 -69529071 - ID_B1 SINE B4 -6 218 13 9 984 299 316 10 20 chr11 52314791 52314891 -69528965 - L2 LINE L2 -602 2817 2719 9 984 1077 101 0 19 chr11 52315186 52315401 -69528455 + (TCC)n Simple_repeat Simple_repeat 1 210 0 9 984 969 168 0 0 chr11 52315404 52315583 -69528273 + CT-rich Low_complexity Low_complexity 2 180 0 9 984 2494 115 62 18 chr11 52315659 52316049 -69527807 + MTB_Mm LTR MaLR 1 407 0 9 984 227 288 19 70 chr11 52316915 52316965 -69526891 - RMER17A LTR ERVK -285 466 417 9 984 378 0 0 0 chr11 52316965 52317007 -69526849 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 984 227 288 19 70 chr11 52317007 52317113 -69526743 - RMER17A LTR ERVK -335 416 318 9 984 762 207 15 0 chr11 52317103 52317238 -69526618 - B1_Mur1 SINE Alu -12 137 1 9 984 355 239 15 131 chr11 52317126 52317256 -69526600 - MT2B LTR ERVL -337 264 150 9 984 24 32 0 0 chr11 52317849 52317880 -69525976 + AT_rich Low_complexity Low_complexity 1 31 0 9 984 180 0 0 0 chr11 52317916 52317936 -69525920 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 984 698 234 231 32 chr11 52317952 52318173 -69525683 - B4 SINE B4 -20 272 8 9 984 281 217 16 48 chr11 52319137 52319200 -69524656 - L2a LINE L2 -5 3421 3361 9 984 471 225 0 29 chr11 52319432 52319537 -69524319 - PB1D7 SINE Alu -16 104 3 9 984 1250 223 68 7 chr11 52319655 52319999 -69523857 + MTD LTR MaLR 1 405 -14 9 984 265 282 0 13 chr11 52320018 52320097 -69523759 - MIRb SINE MIR -162 106 29 9 984 953 209 0 32 chr11 52320134 52320178 -69523678 - B3 SINE B2 0 216 178 9 984 1823 117 177 35 chr11 52320178 52320523 -69523333 - ORR1B1 LTR MaLR 0 394 1 9 984 953 209 0 32 chr11 52320523 52320666 -69523190 - B3 SINE B2 -39 177 35 9 984 932 169 6 0 chr11 52320683 52320861 -69522995 + CT-rich Low_complexity Low_complexity 2 180 0 9 984 1146 6 53 0 chr11 52320870 52321041 -69522815 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 984 911 106 199 0 chr11 52321062 52321213 -69522643 - B2_Mm2 SINE B2 -8 187 7 9 984 247 292 8 103 chr11 52321247 52321373 -69522483 + B1_Mur3 SINE Alu 13 126 -23 9 984 367 254 151 13 chr11 52321373 52321394 -69522462 + ID_B1 SINE B4 94 249 -43 9 984 378 42 0 0 chr11 52321498 52321546 -69522310 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 984 541 289 19 0 chr11 52322512 52322671 -69521185 + RSINE1 SINE B4 2 163 -2 9 984 356 219 121 71 chr11 52322679 52322791 -69521065 - B1_Mur1 SINE Alu -7 142 24 9 984 956 241 0 18 chr11 52322856 52323076 -69520780 + ORR1E LTR MaLR 9 224 -135 9 984 204 40 0 0 chr11 52323427 52323452 -69520404 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 9 984 496 327 135 35 chr11 52323533 52323910 -69519946 + MLT1C LTR MaLR 1 415 -52 9 984 883 247 156 44 chr11 52323959 52324209 -69519647 - B4 SINE B4 -9 283 6 9 984 2709 108 11 5 chr11 52324471 52324845 -69519011 - ORR1C1 LTR MaLR 0 378 3 9 984 598 302 6 0 chr11 52324918 52325077 -69518779 - RSINE1 SINE B4 -4 161 2 9 984 324 0 0 0 chr11 52326136 52326172 -69517684 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 9 984 807 144 0 0 chr11 52326328 52326467 -69517389 + (TG)n Simple_repeat Simple_repeat 1 139 0 9 984 213 344 10 41 chr11 52326484 52326581 -69517275 - MIR SINE MIR -167 95 2 9 984 314 189 77 51 chr11 52326581 52326659 -69517197 + MER34A1 LTR ERV1 1 80 -507 9 984 460 169 0 24 chr11 52326663 52326748 -69517108 + B4 SINE B4 6 88 -204 9 984 1508 278 33 14 chr11 52327082 52327443 -69516413 + ORR1D2 LTR MaLR 1 368 -2 9 984 380 20 20 0 chr11 52327464 52327513 -69516343 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 984 1167 188 201 79 chr11 52327534 52327677 -69516179 + ORR1D1 LTR MaLR 6 146 -228 9 984 207 0 0 0 chr11 52327677 52327700 -69516156 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 984 1167 188 201 79 chr11 52327700 52327885 -69515971 + ORR1D1 LTR MaLR 147 374 0 9 984 583 244 249 0 chr11 52328098 52328275 -69515581 + ID_B1 SINE B4 1 221 -3 9 984 918 167 199 6 chr11 52328408 52328589 -69515267 - B3 SINE B2 0 216 1 9 984 533 280 60 57 chr11 52329693 52330026 -69513830 - HAL1 LINE L1 -324 2183 1850 9 984 230 313 72 72 chr11 52330090 52330228 -69513628 - ORR1E LTR MaLR -180 179 42 9 984 282 232 31 0 chr11 52330217 52330298 -69513558 + MTC LTR MaLR 8 90 -331 9 984 308 170 0 0 chr11 52330304 52330357 -69513499 - ID_B1 SINE B4 -107 117 65 9 984 217 232 24 24 chr11 52330358 52330442 -69513414 + GA-rich Low_complexity Low_complexity 2 85 0 9 984 473 154 11 0 chr11 52330481 52330572 -69513284 + GA-rich Low_complexity Low_complexity 3 94 0 9 984 726 224 39 0 chr11 52330657 52330813 -69513043 - RSINE1 SINE B4 -1 164 3 9 984 1090 177 20 25 chr11 52330968 52331165 -69512691 - B3 SINE B2 -20 196 1 9 984 759 298 165 8 chr11 52331926 52332193 -69511663 - Lx8 LINE L1 -124 7349 7041 9 984 538 308 0 0 chr11 52332298 52332428 -69511428 - B1F2 SINE Alu -18 131 2 9 984 612 78 70 14 chr11 52332432 52332575 -69511281 + (TCTCTG)n Simple_repeat Simple_repeat 6 156 0 9 984 916 274 95 16 chr11 52332575 52332827 -69511029 - B4 SINE B4 -10 282 11 9 984 690 289 122 16 chr11 52332996 52333469 -69510387 - L1MC4a LINE L1 -1908 5974 5444 9 984 548 333 64 64 chr11 52333477 52333759 -69510097 - MLT1L LTR MaLR -320 290 9 9 984 765 271 81 8 chr11 52334049 52334106 -69509750 - B4A SINE B4 0 292 233 9 984 450 0 0 0 chr11 52334106 52334156 -69509700 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 9 984 609 300 12 6 chr11 52334156 52334317 -69509539 - RSINE1 SINE B4 -1 164 3 9 984 765 271 81 8 chr11 52334317 52334492 -69509364 - B4A SINE B4 -60 232 44 9 984 375 23 0 0 chr11 52335180 52335224 -69508632 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 984 198 71 0 0 chr11 52335224 52335252 -69508604 + (GA)n Simple_repeat Simple_repeat 2 29 0 9 984 230 214 0 0 chr11 52335789 52335843 -69508013 - MIRm SINE MIR 0 268 216 9 984 921 187 104 6 chr11 52336631 52336814 -69507042 - Lx8 LINE L1 -201 7272 7072 9 984 244 257 14 14 chr11 52337422 52337493 -69506363 + CT-rich Low_complexity Low_complexity 4 74 0 9 984 180 0 0 0 chr11 52338156 52338176 -69505680 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 9 984 250 248 0 20 chr11 52338191 52338339 -69505517 + (TATG)n Simple_repeat Simple_repeat 2 146 0 9 984 485 296 17 0 chr11 52338375 52338547 -69505309 + (TATG)n Simple_repeat Simple_repeat 4 178 0 9 984 396 337 0 0 chr11 52338630 52338808 -69505048 + (TG)n Simple_repeat Simple_repeat 2 179 0 9 984 336 200 0 0 chr11 52338820 52338890 -69504966 + (TA)n Simple_repeat Simple_repeat 2 71 0 9 984 213 39 0 0 chr11 52338931 52338957 -69504899 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 984 21 0 0 0 chr11 52339848 52339869 -69503987 + AT_rich Low_complexity Low_complexity 1 21 0 9 984 746 291 167 19 chr11 52340034 52340405 -69503451 + MLT1D LTR MaLR 70 495 -10 9 984 629 229 15 15 chr11 52340742 52340875 -69502981 + MTEa LTR MaLR 1 133 -246 9 984 276 269 142 42 chr11 52340889 52341032 -69502824 + MTEa LTR MaLR 181 334 -25 9 984 404 330 45 11 chr11 52341770 52341948 -69501908 + MER5A DNA MER1_type 1 184 -5 9 984 568 202 79 0 chr11 52342095 52342209 -69501647 - B1F SINE Alu 0 149 27 9 984 384 285 129 21 chr11 52342209 52342235 -69501621 - ID_B1 SINE B4 0 224 70 9 984 404 275 44 0 chr11 52342702 52342862 -69500994 + L1ME4a LINE L1 5957 6123 -1 9 984 543 101 0 0 chr11 52343123 52343202 -69500654 + (TG)n Simple_repeat Simple_repeat 1 79 0 9 984 582 268 160 50 chr11 52344157 52344254 -69499602 - ID_B1 SINE B4 0 224 101 9 984 1177 119 32 16 chr11 52344254 52344441 -69499415 - B2_Mm2 SINE B2 -5 190 1 9 984 582 268 160 50 chr11 52344441 52344543 -69499313 - ID_B1 SINE B4 -124 100 3 9 984 1234 247 24 82 chr11 52345385 52345768 -69498088 - MTE2a LTR MaLR -13 408 39 9 984 22 35 0 0 chr11 52346191 52346220 -69497636 + AT_rich Low_complexity Low_complexity 1 29 0 9 984 557 245 124 47 chr11 52347172 52347365 -69496491 + ID_B1 SINE B4 14 221 -3 9 984 874 83 0 24 chr11 52347246 52347370 -69496486 + B1_Mus1 SINE Alu 28 148 0 9 984 228 35 0 0 chr11 52347371 52347400 -69496456 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 984 1462 191 74 79 chr11 52347414 52347846 -69496010 - RMER10A LTR ERVL -5 437 8 9 984 242 239 0 0 chr11 52347842 52347888 -69495968 + RSINE1 SINE B4 92 137 -28 9 984 213 121 0 0 chr11 52348139 52348172 -69495684 + (ATG)n Simple_repeat Simple_repeat 3 35 0 9 984 238 214 127 14 chr11 52350939 52351001 -69492855 + MTEa LTR MaLR 39 107 -252 9 984 414 0 0 0 chr11 52351001 52351047 -69492809 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 984 364 262 36 45 chr11 52351062 52351174 -69492682 + MTEa LTR MaLR 254 364 -15 9 984 313 288 25 0 chr11 52352096 52352176 -69491680 + Charlie12 DNA MER1_type 1 82 -2791 1 984 342 0 0 0 chr11 52352180 52352218 -69491638 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 984 536 304 101 6 chr11 52352266 52352425 -69491431 - B4A SINE B4 -95 197 24 1 984 405 184 92 0 chr11 52352461 52352548 -69491308 - RMER30 DNA MER1_type -100 102 8 1 984 329 282 0 14 chr11 52352915 52352987 -69490869 + ID4 SINE ID 12 82 -1 1 984 263 353 162 43 chr11 52353221 52353455 -69490401 + MIRb SINE MIR 5 266 -2 1 984 201 161 0 0 chr11 52353560 52353591 -69490265 + L2c LINE L2 3352 3382 -5 1 984 326 207 0 107 chr11 52353898 52354001 -69489855 + ORR1D2 LTR MaLR 25 116 -254 1 984 246 324 57 14 chr11 52355263 52355404 -69488452 + MER103 DNA DNA 3 149 -17 1 984 537 231 34 8 chr11 52355442 52355560 -69488296 - RSINE1 SINE B4 -36 129 9 1 984 668 241 30 79 chr11 52355698 52355901 -69487955 - MTE2b LTR MaLR -5 374 182 1 984 409 304 119 114 chr11 52356698 52357102 -69486754 + MLT1A1 LTR MaLR 3 408 0 1 984 1592 31 0 45 chr11 52357379 52357581 -69486275 - B2_Mm1t SINE B2 0 193 1 1 984 2070 101 58 3 chr11 52357794 52358103 -69485753 + ORR1A3 LTR MaLR 1 326 0 1 984 712 166 237 0 chr11 52358130 52358299 -69485557 - B3 SINE B2 -6 210 2 1 984 326 302 42 19 chr11 52358489 52358641 -69485215 - L1MEe LINE L1 -4028 2138 2005 1 984 526 288 73 47 chr11 52358751 52358984 -69484872 + MTEa LTR MaLR 18 256 -123 1 984 307 291 114 43 chr11 52359006 52359146 -69484710 - HAL1-3A_ME LINE L1 -420 2438 2289 1 984 184 154 39 0 chr11 52359205 52359257 -69484599 + CT-rich Low_complexity Low_complexity 4 57 0 1 984 318 272 12 0 chr11 52359306 52359387 -69484469 + MTEa LTR MaLR 290 371 -8 1 984 541 159 0 29 chr11 52359387 52359523 -69484333 + (CA)n Simple_repeat Simple_repeat 2 133 0 1 984 360 292 8 24 chr11 52359907 52360030 -69483826 - MIR3 SINE MIR -1 207 87 1 984 637 271 99 71 chr11 52360095 52360377 -69483479 + B4A SINE B4 1 290 -2 1 984 522 0 0 0 chr11 52360386 52360444 -69483412 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 984 260 304 143 61 chr11 52360569 52360814 -69483042 - MamRep434 DNA TcMar -24 402 138 1 984 1144 138 186 18 chr11 52360893 52361114 -69482742 + MTD LTR MaLR 1 258 -161 1 984 519 258 137 6 chr11 52361488 52361656 -69482200 + MTD LTR MaLR 230 419 0 1 984 513 245 116 20 chr11 52361713 52361859 -69481997 + ORR1E LTR MaLR 4 163 -196 1 984 363 214 12 54 chr11 52361891 52362017 -69481839 + ORR1E LTR MaLR 239 375 -4 1 984 228 135 0 0 chr11 52362158 52362195 -69481661 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1 984 669 341 71 19 chr11 52362201 52362512 -69481344 + MER58B DNA MER1_type 14 340 -1 1 984 405 39 0 0 chr11 52362538 52362589 -69481267 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 984 189 0 0 0 chr11 52362589 52362609 -69481247 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 984 702 244 19 6 chr11 52362610 52362767 -69481089 - B3A SINE B2 -35 163 5 1 984 490 285 31 0 chr11 52362801 52362931 -69480925 - ID_B1 SINE B4 -68 156 23 1 984 230 250 50 0 chr11 52362878 52362938 -69480918 - ID4 SINE ID -6 77 15 1 984 690 216 79 74 chr11 52363513 52363728 -69480128 - B3 SINE B2 0 216 1 1 984 255 61 0 0 chr11 52363756 52363789 -69480067 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 984 318 173 13 34 chr11 52363797 52363870 -69479986 - B2_Mm2 SINE B2 -95 121 47 1 984 1039 88 7 0 chr11 52363893 52364029 -69479827 - B2_Mm1t SINE B2 -56 137 1 1 984 1191 74 0 0 chr11 52364181 52364329 -69479527 - B1_Mus1 SINE Alu 0 148 1 1 984 291 312 7 94 chr11 52365983 52366121 -69477735 - B4 SINE B4 -72 220 95 1 984 185 0 0 39 chr11 52366125 52366151 -69477705 + (CACCC)n Simple_repeat Simple_repeat 2 26 0 1 984 210 202 18 37 chr11 52366297 52366379 -69477477 + MIRb SINE MIR 113 195 -73 1 984 3348 18 39 0 chr11 52367021 52367402 -69476454 - MTA_Mm LTR MaLR 0 396 1 1 984 9336 31 3 2 chr11 52367404 52368499 -69475357 - MTA_Mm-int LTR MaLR -2 1096 1 1 984 3348 18 39 0 chr11 52368499 52368880 -69474976 - MTA_Mm LTR MaLR 0 396 1 1 984 312 228 102 61 chr11 52368977 52369173 -69474683 - RMER10A LTR ERVL -25 417 214 1 984 423 256 153 61 chr11 52369172 52369434 -69474422 - RMER10A LTR ERVL -146 296 11 1 984 247 263 120 50 chr11 52369711 52369811 -69474045 - RMER10A LTR ERVL -15 427 321 1 984 329 206 11 0 chr11 52369911 52370003 -69473853 + GA-rich Low_complexity Low_complexity 2 94 0 1 984 263 269 0 29 chr11 52371536 52371605 -69472251 - B3A SINE B2 -129 69 3 1 984 513 251 213 0 chr11 52372771 52372954 -69470902 - ID_B1 SINE B4 -1 223 2 1 984 388 150 17 0 chr11 52373177 52373237 -69470619 + B1_Mus2 SINE Alu 77 137 -10 1 984 479 330 80 68 chr11 52373375 52373726 -69470130 + ORR1E LTR MaLR 1 355 -4 1 984 762 222 7 13 chr11 52373869 52374024 -69469832 + B4A SINE B4 2 155 -137 1 984 360 0 0 0 chr11 52374024 52374064 -69469792 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 984 446 317 94 25 chr11 52374082 52374183 -69469673 + MLT1C LTR MaLR 174 286 -181 1 984 1156 147 127 0 chr11 52374183 52374380 -69469476 + URR1A DNA MER1_type 5 226 0 1 984 446 317 94 25 chr11 52374380 52374553 -69469303 + MLT1C LTR MaLR 287 467 0 1 984 463 228 0 0 chr11 52375537 52375629 -69468227 - PB1D10 SINE Alu 0 117 26 1 984 911 229 74 10 chr11 52375694 52375897 -69467959 - B3 SINE B2 0 216 1 1 984 495 48 0 0 chr11 52375920 52375982 -69467874 + (TCC)n Simple_repeat Simple_repeat 3 64 0 1 984 1143 96 0 0 chr11 52375985 52376131 -69467725 - B1_Mus1 SINE Alu 0 148 3 1 984 381 250 0 0 chr11 52376138 52376246 -69467610 + CT-rich Low_complexity Low_complexity 2 109 0 1 984 768 241 37 30 chr11 52376268 52376479 -69467377 - ID_B1 SINE B4 -12 280 66 1 984 300 27 0 0 chr11 52377528 52377565 -69466291 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1 984 245 258 0 16 chr11 52377576 52377639 -69466217 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 984 1020 262 44 4 chr11 52377664 52377913 -69465943 - B4A SINE B4 -30 262 4 1 984 556 278 8 0 chr11 52378586 52378719 -69465137 - B1F1 SINE Alu -12 137 4 1 984 235 263 16 95 chr11 52378881 52378944 -69464912 - B4 SINE B4 0 292 235 1 984 228 286 76 25 chr11 52379331 52379410 -69464446 + MIRc SINE MIR 5 87 -181 1 984 237 191 0 0 chr11 52380323 52380365 -69463491 + B4A SINE B4 2 43 -249 1 984 710 263 91 6 chr11 52380833 52381009 -69462847 + B4A SINE B4 39 229 -63 1 984 330 281 348 0 chr11 52381009 52381144 -69462712 + B3A SINE B2 1 182 -16 1 984 435 198 33 65 chr11 52381152 52381244 -69462612 - RLTR20A2 LTR ERVK 0 578 490 1 984 272 49 0 47 chr11 52381244 52381287 -69462569 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 1 984 435 38 0 0 chr11 52381287 52381339 -69462517 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 984 207 100 0 0 chr11 52381401 52381431 -69462425 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 984 262 306 128 9 chr11 52382265 52382374 -69461482 + MIRb SINE MIR 34 155 -113 1 984 244 263 82 64 chr11 52382436 52382577 -69461279 + LTR33A LTR ERVL 23 156 -639 1 984 212 195 268 49 chr11 52382901 52383033 -69460823 + MIRb SINE MIR 23 188 -80 1 984 261 155 0 0 chr11 52383256 52383314 -69460542 + CT-rich Low_complexity Low_complexity 1 58 0 1 984 289 240 53 0 chr11 52384219 52384294 -69459562 - MTEa LTR MaLR -8 371 293 1 984 351 0 0 0 chr11 52385107 52385146 -69458710 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 984 324 0 0 0 chr11 52385146 52385181 -69458675 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 984 352 341 72 54 chr11 52385315 52385538 -69458318 + MER33 DNA MER1_type 10 236 -88 1 984 731 217 14 0 chr11 52385749 52385892 -69457964 - B1_Mur1 SINE Alu -4 145 1 1 984 651 215 6 14 chr11 52385917 52386067 -69457789 - PB1D9 SINE Alu -1 149 1 1 984 519 262 117 53 chr11 52386067 52386158 -69457698 - B4 SINE B4 -187 105 2 1 984 203 327 95 38 chr11 52386379 52386484 -69457372 - L2c LINE L2 -221 3166 3056 1 984 235 349 80 72 chr11 52386583 52387212 -69456644 - L2c LINE L2 -618 2801 2168 1 984 963 264 194 26 chr11 52388277 52388604 -69455252 + MTD LTR MaLR 1 380 -39 1 984 357 125 0 0 chr11 52388604 52388660 -69455196 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 984 963 264 194 26 chr11 52388660 52388678 -69455178 + MTD LTR MaLR 381 403 -16 1 984 27 0 0 0 chr11 52389232 52389259 -69454597 + AT_rich Low_complexity Low_complexity 1 27 0 1 984 1200 262 58 7 chr11 52389712 52389931 -69453925 + B4A SINE B4 2 227 -65 1 984 279 0 0 0 chr11 52389931 52389962 -69453894 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 984 1200 262 58 7 chr11 52389962 52390019 -69453837 + B4A SINE B4 228 292 0 1 984 414 0 0 0 chr11 52390029 52390075 -69453781 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 984 1967 53 0 0 chr11 52390116 52390361 -69453495 + L1_Mus1 LINE L1 6082 6326 -241 1 984 613 245 121 138 chr11 52390495 52390821 -69453035 - MTE2a LTR MaLR -58 321 33 1 984 1592 131 34 77 chr11 52391041 52391338 -69452518 - ORR1A4 LTR MaLR -45 284 1 1 984 1036 168 5 75 chr11 52391380 52391592 -69452264 - B3A SINE B2 0 198 2 1 984 348 24 0 0 chr11 52391597 52391638 -69452218 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 984 585 316 12 31 chr11 52391645 52391808 -69452048 - RSINE1 SINE B4 0 165 6 1 984 4544 142 44 92 chr11 52393460 52394411 -69449445 + RMER17A2 LTR ERVK 1 906 0 1 984 269 189 11 0 chr11 52394605 52394695 -69449161 + CT-rich Low_complexity Low_complexity 2 92 0 1 984 1244 54 0 0 chr11 52394769 52394917 -69448939 - B1_Mus1 SINE Alu 0 148 1 1 984 768 261 168 0 chr11 52395060 52395286 -69448570 + MTE2b LTR MaLR 1 264 -115 1 984 1938 150 146 6 chr11 52395265 52395627 -69448229 - MTC LTR MaLR -8 413 1 1 984 519 245 145 14 chr11 52395627 52395761 -69448095 + MTE2b LTR MaLR 227 379 0 1 984 4712 277 68 99 chr11 52395761 52396624 -69447232 + MTE2b-int LTR MaLR 1 876 -704 1 984 535 305 0 109 chr11 52396624 52396834 -69447022 + B3A SINE B2 1 187 -11 1 984 4712 277 68 99 chr11 52396834 52397599 -69446257 + MTE2b-int LTR MaLR 877 1577 -3 1 984 1119 264 120 29 chr11 52397605 52397945 -69445911 + MTE2b LTR MaLR 1 370 0 1 984 532 345 97 47 chr11 52398046 52398408 -69445448 - LTR33B LTR ERVL -14 489 110 1 984 1171 259 31 56 chr11 52398802 52399088 -69444768 - MTE2b LTR MaLR -100 279 1 1 984 516 238 81 0 chr11 52399553 52399692 -69444164 + MTEa LTR MaLR 135 283 -96 1 984 356 224 12 50 chr11 52399906 52399986 -69443870 - MTEa LTR MaLR -1 378 302 1 984 600 125 0 11 chr11 52399991 52400080 -69443776 + B1_Mus2 SINE Alu 9 96 -51 1 984 1218 245 41 28 chr11 52400068 52400387 -69443469 - MTEa LTR MaLR -53 326 4 1 984 2049 184 115 5 chr11 52400731 52400926 -69442930 - RMER19B LTR ERVK 0 902 705 1 984 615 14 0 0 chr11 52400926 52400998 -69442858 + (CAG)n Simple_repeat Simple_repeat 2 73 0 1 984 2049 219 140 65 chr11 52400998 52401490 -69442366 - RMER19B LTR ERVK -198 704 20 1 984 196 345 24 0 chr11 52401939 52402023 -69441833 - L2 LINE L2 -1159 2260 2175 1 984 603 74 0 0 chr11 52402557 52402638 -69441218 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 1 984 534 31 0 0 chr11 52402945 52403009 -69440847 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 984 324 0 0 0 chr11 52403200 52403236 -69440620 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 984 742 165 41 0 chr11 52403945 52404066 -69439790 - B1_Mur2 SINE Alu -15 134 9 1 984 345 243 0 104 chr11 52403965 52404080 -69439776 - MT2B LTR ERVL -337 264 162 1 984 358 286 28 9 chr11 52405701 52405807 -69438049 + PB1D10 SINE Alu 3 110 -7 1 984 1050 173 214 18 chr11 52406014 52406206 -69437650 + B4 SINE B4 2 230 -62 1 984 2130 192 21 211 chr11 52406206 52406960 -69436896 + RMER19C LTR ERVK 1 611 0 1 984 1050 173 214 18 chr11 52406960 52406996 -69436860 + B4 SINE B4 231 275 -17 1 984 222 199 52 18 chr11 52407140 52407214 -69436642 + MIRb SINE MIR 162 230 -38 1 984 444 271 43 27 chr11 52408197 52408231 -69435625 - B4A SINE B4 -2 163 1 1 984 302 284 0 76 chr11 52408231 52408349 -69435507 - B3A SINE B2 -89 109 1 1 984 264 219 16 0 chr11 52409663 52409727 -69434129 - L1M2 LINE L1 -6766 83 19 1 984 847 262 75 29 chr11 52409738 52409978 -69433878 - B4 SINE B4 -41 251 1 1 984 1958 160 126 0 chr11 52410122 52410479 -69433377 - MTD LTR MaLR 0 419 18 1 984 185 114 27 67 chr11 52410484 52410559 -69433297 + A-rich Low_complexity Low_complexity 5 76 0 1 984 215 217 0 0 chr11 52410564 52410610 -69433246 + C-rich Low_complexity Low_complexity 6 51 0 1 984 221 398 11 0 chr11 52410677 52410765 -69433091 - L2 LINE L2 -1040 2379 2291 1 984 2554 73 3 0 chr11 52410769 52411096 -69432760 + MTB LTR MaLR 1 328 -72 1 984 296 315 53 53 chr11 52411072 52411180 -69432676 + B4A SINE B4 117 224 -68 1 984 369 136 106 0 chr11 52411180 52411246 -69432610 + RMER6C LTR ERVK 1 73 -617 1 984 277 220 186 28 chr11 52411245 52411390 -69432466 + RMER6C LTR ERVK 270 437 -253 1 984 1872 142 55 12 chr11 52411408 52411735 -69432121 + RMER6C LTR ERVK 350 690 0 1 984 241 344 36 65 chr11 52412003 52412171 -69431685 + ORR1E LTR MaLR 82 244 -115 1 984 693 103 0 0 chr11 52412304 52412421 -69431435 + (CA)n Simple_repeat Simple_repeat 1 117 0 1 984 387 0 0 0 chr11 52412603 52412646 -69431210 + (T)n Simple_repeat Simple_repeat 1 43 0 1 984 228 286 70 105 chr11 52413724 52413810 -69430046 - MamGypLTR1b LTR Gypsy -421 361 279 1 984 349 294 69 38 chr11 52413810 52413941 -69429915 + MIRb SINE MIR 97 231 -37 1 984 201 74 0 0 chr11 52415048 52415075 -69428781 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 984 603 244 287 69 chr11 52415078 52415373 -69428483 - MTE2b LTR MaLR -20 359 1 1 984 270 0 0 0 chr11 52415423 52415453 -69428403 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 1 984 195 299 15 0 chr11 52416534 52416601 -69427255 - MIR SINE MIR -165 97 30 1 984 397 311 84 6 chr11 52416661 52416839 -69427017 - RMER30 DNA MER1_type 0 202 11 1 984 473 269 0 0 chr11 52417400 52417504 -69426352 + PB1D10 SINE Alu 5 108 -9 1 984 438 20 0 0 chr11 52418237 52418288 -69425568 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 984 252 0 0 0 chr11 52418606 52418634 -69425222 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 984 960 281 55 29 chr11 52419432 52419776 -69424080 + ORR1E LTR MaLR 1 353 -6 1 984 737 321 63 13 chr11 52420903 52421140 -69422716 + B4A SINE B4 1 249 -43 1 984 214 304 12 25 chr11 52421147 52421228 -69422628 + (CATA)n Simple_repeat Simple_repeat 3 82 0 1 984 27 0 0 0 chr11 52421399 52421426 -69422430 + AT_rich Low_complexity Low_complexity 1 27 0 1 984 217 293 0 17 chr11 52421488 52421547 -69422309 - PB1D10 SINE Alu -1 116 59 1 984 252 321 0 12 chr11 52421623 52421705 -69422151 - ERVL-E-int LTR ERVL -2861 2806 2726 1 984 331 260 21 10 chr11 52421834 52421931 -69421925 - ERVL-E-int LTR ERVL -3061 2606 2509 1 984 1216 150 148 13 chr11 52422052 52422185 -69421671 + ORR1C2 LTR MaLR 32 197 -187 1 984 558 0 0 0 chr11 52422185 52422247 -69421609 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 984 1216 127 169 5 chr11 52422247 52422346 -69421510 + ORR1C2 LTR MaLR 198 301 -83 1 984 180 0 0 0 chr11 52422697 52422717 -69421139 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1 984 618 102 0 0 chr11 52422817 52422905 -69420951 + ORR1C2 LTR MaLR 297 384 0 1 984 6440 175 113 52 chr11 52422906 52424326 -69419530 + ORR1C2-int LTR MaLR 2 1508 -1 1 984 2329 137 52 0 chr11 52424328 52424692 -69419164 + ORR1C2 LTR MaLR 2 384 0 1 984 234 271 28 28 chr11 52425311 52425383 -69418473 + RSINE1 SINE B4 2 73 -92 1 984 2302 98 38 22 chr11 52425386 52425757 -69418099 - IAPEY_LTR LTR ERVK -11 464 1 1 984 464 301 119 19 chr11 52425759 52425969 -69417887 + B4 SINE B4 60 290 -2 1 984 213 268 56 14 chr11 52426124 52426196 -69417660 + ID SINE ID 1 75 -149 1 984 296 359 89 6 chr11 52426414 52426571 -69417285 - LTR33 LTR ERVL -305 210 41 1 984 825 153 0 8 chr11 52426578 52426703 -69417153 - B1_Mur4 SINE Alu -25 125 2 1 984 362 301 0 105 chr11 52426703 52426740 -69417116 - MT2B LTR ERVL -452 149 129 1 984 410 206 0 0 chr11 52426850 52426918 -69416938 - U6 snRNA snRNA -38 69 2 1 984 1234 48 0 0 chr11 52426996 52427143 -69416713 + B1_Mus2 SINE Alu 1 147 0 1 984 229 274 83 117 chr11 52427275 52427395 -69416461 - RMER15 LTR ERVL -104 471 356 1 984 842 228 105 22 chr11 52427437 52427649 -69416207 - B3 SINE B2 -3 213 1 1 984 1703 231 14 11 chr11 52427695 52428054 -69415802 + ORR1D2 LTR MaLR 11 370 0 1 984 474 18 0 0 chr11 52428157 52428212 -69415644 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 984 201 260 0 20 chr11 52428509 52428560 -69415296 + CT-rich Low_complexity Low_complexity 4 53 0 1 15 776 274 52 102 chr11 52428593 52428898 -69414958 - B4A SINE B4 0 292 3 1 985 237 229 44 94 chr11 52428908 52429067 -69414789 - Charlie21a DNA MER1_type -120 1093 943 1 985 2498 274 40 26 chr11 52429143 52429925 -69413931 - Charlie21a DNA MER1_type -265 948 156 1 985 1093 222 5 9 chr11 52429925 52430139 -69413717 + ID_B1 SINE B4 2 214 -10 1 985 243 278 0 0 chr11 52431447 52431501 -69412355 + PB1D9 SINE Alu 2 55 -65 1 985 339 278 35 56 chr11 52431549 52431665 -69412191 + B1_Mur1 SINE Alu 42 146 -3 1 985 290 269 13 13 chr11 52431691 52431770 -69412086 + 4.5SRNA scRNA scRNA 7 85 -9 1 985 584 270 32 38 chr11 52431775 52431933 -69411923 + B3A SINE B2 15 171 -27 1 985 223 174 0 0 chr11 52432000 52432046 -69411810 + A-rich Low_complexity Low_complexity 26 71 0 1 985 291 298 84 70 chr11 52434514 52434727 -69409129 + RLTR20A LTR ERVK 53 268 -273 1 985 477 209 57 57 chr11 52435447 52435569 -69408287 - MTEa LTR MaLR -2 377 256 1 985 384 264 69 39 chr11 52435583 52435713 -69408143 - MTEa LTR MaLR -222 137 4 1 985 254 318 94 82 chr11 52437386 52437619 -69406237 + MamGypLTR1d LTR Gypsy 13 248 -565 1 985 1031 153 121 10 chr11 52438960 52439158 -69404698 - URR1A DNA MER1_type -5 221 2 1 985 755 238 54 0 chr11 52439601 52439769 -69404087 - B3A SINE B2 -21 177 1 1 985 319 344 49 0 chr11 52440139 52440261 -69403595 + MLT1F1 LTR MaLR 435 562 -7 1 985 1227 62 0 0 chr11 52440508 52440653 -69403203 - B1_Mm SINE Alu 0 147 3 1 985 403 184 39 62 chr11 52440740 52440965 -69402891 + (TATAA)n Simple_repeat Simple_repeat 1 219 0 1 985 259 194 210 0 chr11 52440976 52441038 -69402818 + B4 SINE B4 1 75 -217 1 985 534 249 58 156 chr11 52441224 52441475 -69402381 + ORR1E LTR MaLR 8 255 -115 1 985 436 281 214 19 chr11 52441526 52441736 -69402120 - RMER21B LTR ERV1 -275 567 317 1 985 577 205 44 66 chr11 52441822 52441958 -69401898 - RMER21B LTR ERV1 -709 133 1 1 985 306 50 0 0 chr11 52442086 52442126 -69401730 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 985 355 179 12 37 chr11 52442129 52442210 -69401646 + ORR1E LTR MaLR 292 370 0 1 985 480 218 59 39 chr11 52442367 52442520 -69401336 + MER33 DNA MER1_type 60 215 -109 1 985 1029 299 92 36 chr11 52442895 52443342 -69400514 + MLT1D LTR MaLR 25 496 -9 1 985 641 306 38 0 chr11 52443610 52443767 -69400089 + B3A SINE B2 9 171 -27 1 985 480 100 0 0 chr11 52443776 52443856 -69400000 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 985 831 199 0 0 chr11 52443872 52444003 -69399853 + B1_Mur2 SINE Alu 1 131 -18 1 985 291 28 0 0 chr11 52444007 52444043 -69399813 + (CAAT)n Simple_repeat Simple_repeat 4 39 0 1 985 373 315 28 14 chr11 52444066 52444211 -69399645 + B1F1 SINE Alu 1 147 -2 1 985 506 275 9 0 chr11 52446072 52446181 -69397675 - MTEb LTR MaLR 0 379 270 1 985 399 41 0 0 chr11 52446203 52446252 -69397604 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 985 764 284 21 0 chr11 52446252 52446442 -69397414 - MTEb LTR MaLR -183 196 3 1 985 815 278 110 31 chr11 52447465 52447755 -69396101 + RMER5 LTR ERV1 48 360 -174 1 985 392 238 53 177 chr11 52447737 52447772 -69396084 - B2_Mm2 SINE B2 -11 184 152 1 985 606 49 0 0 chr11 52447772 52447854 -69396002 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 985 654 217 8 116 chr11 52447854 52448027 -69395829 - B3A SINE B2 -44 151 2 1 985 748 216 157 20 chr11 52448027 52448208 -69395648 + RMER5 LTR ERV1 327 534 0 1 985 1750 245 19 3 chr11 52450075 52450444 -69393412 + MTEa LTR MaLR 1 375 -4 1 985 315 0 0 0 chr11 52451181 52451216 -69392640 + (CAG)n Simple_repeat Simple_repeat 1 35 0 1 985 683 237 39 39 chr11 52452984 52453164 -69390692 + RMER15 LTR ERVL 366 545 -30 1 985 683 257 39 20 chr11 52453233 52453416 -69390440 - B3A SINE B2 -7 188 1 1 985 732 245 0 7 chr11 52454758 52454902 -69388954 - B1F2 SINE Alu -5 144 2 1 985 22 0 0 0 chr11 52454911 52454933 -69388923 + AT_rich Low_complexity Low_complexity 1 22 0 1 985 180 255 19 56 chr11 52455220 52455274 -69388582 - L2b LINE L2 -1 3374 3323 1 985 326 275 13 48 chr11 52456462 52456570 -69387286 - PB1D10 SINE Alu -26 121 18 1 985 785 167 7 0 chr11 52456589 52456739 -69387117 + T-rich Low_complexity Low_complexity 3 153 0 1 985 270 293 8 59 chr11 52456743 52456897 -69386959 - MIRb SINE MIR -61 147 11 1 985 664 260 40 7 chr11 52457578 52457729 -69386127 - RSINE1 SINE B4 -8 157 2 1 985 231 296 25 85 chr11 52458547 52458665 -69385191 + LTR16A1 LTR ERVL 344 454 -2 1 985 1496 265 30 11 chr11 52458768 52459138 -69384718 - MTE2a LTR MaLR 0 379 3 1 985 220 265 0 0 chr11 52459205 52459254 -69384602 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1 985 369 43 0 0 chr11 52459387 52459434 -69384422 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 1 985 1315 204 75 104 chr11 52460063 52460447 -69383409 - MTE2a LTR MaLR 0 379 7 1 985 294 374 88 5 chr11 52462668 52462872 -69380984 - MIRb SINE MIR -14 254 34 1 985 1104 245 91 7 chr11 52462990 52463286 -69380570 - ORR1E LTR MaLR -17 342 22 1 985 252 308 94 20 chr11 52464921 52465070 -69378786 + RMER12 LTR ERVK 683 842 -480 1 985 636 296 32 11 chr11 52465040 52465253 -69378603 - B4 SINE B4 0 292 69 1 985 504 114 0 3 chr11 52465276 52465351 -69378505 - tRNA-Lys-AAG tRNA tRNA -3 73 1 1 985 282 209 43 29 chr11 52465381 52465450 -69378406 - B4 SINE B4 -222 70 1 1 985 416 254 74 33 chr11 52466400 52466522 -69377334 + B4A SINE B4 9 135 -157 1 985 1272 259 20 82 chr11 52466538 52466609 -69377247 + MTE2a LTR MaLR 1 64 -315 1 985 2259 97 18 59 chr11 52466609 52466950 -69376906 - ORR1A2 LTR MaLR 0 327 1 1 985 1272 259 20 82 chr11 52466950 52467281 -69376575 + MTE2a LTR MaLR 65 378 -1 1 985 279 253 114 0 chr11 52467282 52467361 -69376495 + B4A SINE B4 199 286 -6 1 985 615 294 114 21 chr11 52468527 52468861 -69374995 + L1ME2 LINE L1 4644 5008 -1138 1 985 1266 236 79 10 chr11 52468870 52469174 -69374682 + MTD LTR MaLR 81 405 -14 1 985 227 306 24 40 chr11 52469186 52469312 -69374544 + L1ME2 LINE L1 5004 5127 -1019 1 985 708 263 72 11 chr11 52469337 52469518 -69374338 + B3A SINE B2 6 197 -1 1 985 464 293 57 65 chr11 52469524 52470055 -69373801 + L1ME2 LINE L1 5126 5668 -511 1 985 1065 147 16 16 chr11 52470460 52470647 -69373209 + RMER17C LTR ERVK 224 410 0 1 985 326 107 0 0 chr11 52470668 52470721 -69373135 + B1_Mus1 SINE Alu 5 57 -92 1 985 509 12 0 122 chr11 52470743 52470924 -69372932 + (GGA)n Simple_repeat Simple_repeat 3 161 0 1 985 592 185 27 27 chr11 52470924 52471035 -69372821 + B1F2 SINE Alu 39 149 0 1 985 1570 303 93 36 chr11 52471124 52471812 -69372044 + Lx6 LINE L1 6681 7407 -53 1 985 282 332 82 41 chr11 52471825 52472045 -69371811 + L1ME2 LINE L1 5884 6112 -52 1 985 185 286 0 0 chr11 52472690 52472732 -69371124 + L2a LINE L2 3359 3400 -26 1 985 250 213 0 0 chr11 52472803 52472850 -69371006 - MLT1I LTR MaLR 0 411 365 1 985 267 242 15 15 chr11 52473296 52473363 -69370493 - MLT1A LTR MaLR -2 406 340 1 985 800 129 7 22 chr11 52473347 52473482 -69370374 + RLTR12A LTR ERVK 331 463 -105 1 985 405 318 62 56 chr11 52473514 52473781 -69370075 - MLT1A LTR MaLR -53 355 31 1 985 1178 256 34 70 chr11 52473813 52474200 -69369656 - MTEb LTR MaLR -2 377 5 1 985 821 263 112 74 chr11 52476326 52476647 -69367209 - ORR1E LTR MaLR -6 373 24 1 985 213 82 0 155 chr11 52476825 52476941 -69366915 + (CACTG)n Simple_repeat Simple_repeat 1 98 0 1 985 337 239 7 26 chr11 52477499 52477662 -69366194 + CT-rich Low_complexity Low_complexity 1 159 0 1 985 768 279 32 14 chr11 52477662 52477880 -69365976 - ID_B1 SINE B4 -1 223 2 1 985 186 341 38 27 chr11 52478393 52478504 -69365352 - MIR SINE MIR -132 136 15 1 985 295 308 44 55 chr11 52478852 52479018 -69364838 + MIRb SINE MIR 17 191 -77 1 985 2638 131 31 24 chr11 52479105 52479521 -69364335 - MTC LTR MaLR 0 421 3 1 985 387 0 0 0 chr11 52479576 52479619 -69364237 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 985 480 295 127 58 chr11 52479625 52479884 -69363972 - B4 SINE B4 -14 278 2 1 985 340 303 79 73 chr11 52480220 52480469 -69363387 - ORR1E LTR MaLR -24 335 33 1 985 351 44 0 0 chr11 52480469 52480514 -69363342 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 985 265 319 61 41 chr11 52480514 52480545 -69363311 - ORR1E LTR MaLR -327 32 2 1 985 876 300 5 0 chr11 52481014 52481214 -69362642 - ID_B1 SINE B4 -21 203 3 1 985 654 243 74 11 chr11 52481237 52481412 -69362444 - B3A SINE B2 -12 186 1 1 985 342 45 0 0 chr11 52481657 52481701 -69362155 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 985 1802 212 55 11 chr11 52481701 52482082 -69361774 + MTD LTR MaLR 22 419 0 1 985 1395 236 43 84 chr11 52482663 52483056 -69360800 - MTE2b LTR MaLR -2 377 1 1 985 567 0 0 0 chr11 52483645 52483708 -69360148 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 985 766 277 35 51 chr11 52483709 52483964 -69359892 - B4A SINE B4 -23 269 19 1 985 214 313 88 29 chr11 52484464 52484566 -69359290 - L2a LINE L2 -16 3410 3303 1 985 330 294 36 14 chr11 52486379 52486519 -69357337 + MLT1A1 LTR MaLR 235 408 0 1 985 2402 258 68 8 chr11 52486911 52487663 -69356193 + Lx8 LINE L1 6553 7376 -97 1 985 515 233 47 109 chr11 52487940 52488174 -69355682 - L1M2 LINE L1 -752 5432 5215 1 985 1467 66 0 6 chr11 52488174 52488356 -69355500 - B2_Mm2 SINE B2 -14 181 1 1 985 515 231 49 120 chr11 52488356 52488418 -69355438 - L1M2 LINE L1 -929 5214 5153 1 985 627 299 188 26 chr11 52488514 52488898 -69354958 - RMER15 LTR ERVL -128 447 2 1 985 332 115 16 0 chr11 52489352 52489408 -69354448 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 985 1091 86 23 0 chr11 52489408 52489582 -69354274 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 985 989 146 0 0 chr11 52489610 52489754 -69354102 - B1_Mur4 SINE Alu 0 150 7 1 985 255 122 0 0 chr11 52489790 52489839 -69354017 + (A)n Simple_repeat Simple_repeat 1 49 0 1 985 278 50 25 0 chr11 52491359 52491399 -69352457 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 985 234 0 0 0 chr11 52492512 52492538 -69351318 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 985 378 0 0 0 chr11 52492538 52492579 -69351277 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 985 450 0 0 0 chr11 52492676 52492726 -69351130 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 985 874 224 163 24 chr11 52493106 52493394 -69350462 - RMER15 LTR ERVL 0 575 248 1 985 361 152 82 100 chr11 52493417 52493527 -69350329 - RMER15 LTR ERVL -467 108 1 1 985 301 188 0 0 chr11 52493647 52493695 -69350161 + MLT1H2 LTR MaLR 104 151 -338 1 985 2212 172 56 8 chr11 52493989 52494381 -69349475 - MTC LTR MaLR -8 413 3 1 985 2027 213 14 12 chr11 52494547 52494965 -69348891 - MTD LTR MaLR 0 419 1 1 985 2860 26 2 207 chr11 52495024 52495512 -69348344 - RLTR10 LTR ERVK -2 388 1 1 985 8560 15 0 2 chr11 52495514 52496509 -69347347 - RLTR10-int LTR ERVK -3 1984 992 1 985 395 239 64 32 chr11 52496592 52496748 -69347108 - RLTR10-int LTR ERVK -5987 1594 1434 1 985 3819 49 38 2 chr11 52496784 52497672 -69346184 - RLTR10-int LTR ERVK -989 998 3 1 985 2775 31 2 207 chr11 52497679 52498166 -69345690 - RLTR10 LTR ERVK -3 387 1 1 985 336 24 0 0 chr11 52498206 52498247 -69345609 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 985 1346 201 167 7 chr11 52499534 52499834 -69344022 + MTEa LTR MaLR 32 379 0 1 985 629 101 26 23 chr11 52499888 52500000 -69343856 + ORR1B1 LTR MaLR 29 141 -253 1 985 1043 196 5 10 chr11 52500000 52500196 -69343660 + ORR1A3 LTR MaLR 89 283 -43 1 985 1711 170 196 11 chr11 52500151 52500514 -69343342 - RMER4B LTR ERVK -155 430 1 2 985 410 244 119 73 chr11 52500525 52500702 -69343154 - MLT1A0 LTR MaLR -180 185 1 3 985 234 211 169 0 chr11 52501344 52501415 -69342441 + MLT1A0 LTR MaLR 6 88 -277 4 985 550 297 91 94 chr11 52501571 52501913 -69341943 + ORR1E LTR MaLR 15 355 -4 5 985 225 250 15 59 chr11 52501923 52501991 -69341865 + L2a LINE L2 3347 3411 -15 6 985 599 203 51 19 chr11 52501997 52502153 -69341703 + ORR1E LTR MaLR 1 161 -198 7 985 1597 183 161 3 chr11 52502152 52502487 -69341369 - MTD LTR MaLR -7 412 25 8 985 301 211 18 0 chr11 52502495 52502552 -69341304 + ORR1E LTR MaLR 322 379 0 7 985 192 111 0 0 chr11 52503199 52503235 -69340621 + (A)n Simple_repeat Simple_repeat 1 36 0 9 985 3507 195 71 76 chr11 52503407 52504312 -69339544 + RMER13B LTR ERVK 5 904 -4 1 985 1930 280 53 24 chr11 52504766 52505447 -69338409 - RMER1C Other Other -333 1009 377 1 985 288 0 0 0 chr11 52505841 52505873 -69337983 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 985 726 192 290 31 chr11 52505873 52506058 -69337798 + B4 SINE B4 16 250 -42 1 985 528 93 0 0 chr11 52506065 52506140 -69337716 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 1 985 369 58 0 0 chr11 52506141 52506193 -69337663 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 985 375 73 0 0 chr11 52507060 52507115 -69336741 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 985 335 317 132 47 chr11 52507140 52507352 -69336504 - B4 SINE B4 -18 274 45 1 985 941 277 146 38 chr11 52507360 52507702 -69336154 - MTE2b LTR MaLR 0 379 1 1 985 335 353 57 34 chr11 52509418 52509594 -69334262 + MLT1J LTR MaLR 104 283 -229 1 985 1022 267 11 15 chr11 52509850 52510124 -69333732 + B4 SINE B4 2 274 -18 2 985 518 280 88 84 chr11 52510518 52510838 -69333018 + MTEb LTR MaLR 59 379 0 2 985 1165 293 74 6 chr11 52511369 52511692 -69332164 - ORR1E LTR MaLR -6 353 9 2 985 245 325 39 47 chr11 52511916 52512045 -69331811 - MIR SINE MIR -9 253 126 2 985 712 209 174 6 chr11 52512076 52512254 -69331602 + B3 SINE B2 3 210 -6 2 985 198 0 0 0 chr11 52513129 52513151 -69330705 + (A)n Simple_repeat Simple_repeat 1 22 0 2 985 195 42 0 0 chr11 52513208 52513232 -69330624 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 985 230 300 5 10 chr11 52513323 52513399 -69330457 + B4A SINE B4 143 217 -75 2 985 593 336 79 19 chr11 52513381 52513648 -69330208 + B4A SINE B4 6 288 -4 2 985 584 97 11 0 chr11 52514260 52514353 -69329503 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 985 459 0 0 0 chr11 52515719 52515770 -69328086 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 985 544 320 88 21 chr11 52515779 52516018 -69327838 - B4 SINE B4 -31 261 7 3 985 324 365 76 64 chr11 52517290 52517633 -69326223 + ORR1D1 LTR MaLR 23 369 -5 3 985 324 0 0 0 chr11 52517654 52517690 -69326166 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 985 773 249 21 32 chr11 52517887 52518074 -69325782 + B3A SINE B2 1 185 -13 3 985 186 343 77 19 chr11 52519329 52519433 -69324423 + MIR3 SINE MIR 45 154 -54 3 985 559 243 63 21 chr11 52519677 52519820 -69324036 + MER68 LTR ERVL 154 302 -261 3 985 470 200 0 34 chr11 52520431 52520519 -69323337 + B4 SINE B4 1 85 -207 3 985 565 295 112 31 chr11 52520557 52520753 -69323103 + B4 SINE B4 81 292 0 3 985 306 0 0 0 chr11 52520756 52520790 -69323066 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 985 432 0 0 0 chr11 52520790 52520837 -69323019 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 985 853 245 5 55 chr11 52522232 52522431 -69321425 + B3A SINE B2 2 190 -8 4 985 218 299 111 9 chr11 52522459 52522567 -69321289 + L2a LINE L2 3308 3426 0 4 985 23 33 0 0 chr11 52524989 52525019 -69318837 + AT_rich Low_complexity Low_complexity 1 30 0 4 985 302 234 9 0 chr11 52525530 52525637 -69318219 + CT-rich Low_complexity Low_complexity 1 108 0 4 985 268 360 26 0 chr11 52525744 52525858 -69317998 - PB1D10 SINE Alu 0 117 1 4 985 543 286 89 49 chr11 52525858 52525940 -69317916 - ID_B1 SINE B4 -201 91 1 4 985 595 250 14 56 chr11 52526301 52526445 -69317411 + ID_B1 SINE B4 84 221 -3 4 985 281 331 0 91 chr11 52526319 52526462 -69317394 - YREP_Mm Unknown Unknown -1516 296 167 4 985 1418 215 90 54 chr11 52526511 52526899 -69316957 + MTD LTR MaLR 18 419 0 4 985 1097 205 63 34 chr11 52527123 52527391 -69316465 + B4 SINE B4 3 278 -14 4 985 638 197 0 6 chr11 52527448 52527815 -69316041 + (CA)n Simple_repeat Simple_repeat 1 364 0 5 985 232 261 92 82 chr11 52527843 52528039 -69315817 + L2c LINE L2 3201 3381 -45 5 985 544 138 0 0 chr11 52528633 52528713 -69315143 - B3A SINE B2 -112 86 7 5 985 357 272 80 86 chr11 52528752 52529066 -69314790 - L1MC LINE L1 -983 5163 4852 5 985 980 278 29 29 chr11 52529642 52529920 -69313936 - MT2A LTR ERVL -91 442 165 5 985 242 244 0 11 chr11 52530165 52530252 -69313604 - L1MA5 LINE L1 -7 6293 6208 5 985 298 333 11 0 chr11 52530307 52530397 -69313459 - RMER15 LTR ERVL -114 461 371 5 985 1301 215 162 6 chr11 52531752 52532080 -69311776 + MTEa LTR MaLR 1 379 0 5 985 379 311 86 66 chr11 52532406 52532662 -69311194 - L2a LINE L2 -4 3422 3111 5 985 1055 247 66 12 chr11 52532685 52532927 -69310929 - MTD LTR MaLR -147 272 18 5 985 265 359 113 45 chr11 52532938 52533678 -69310178 - L2a LINE L2 -338 3081 2291 5 985 899 226 0 45 chr11 52533730 52533929 -69309927 + B3A SINE B2 1 190 -8 6 985 429 20 0 0 chr11 52535380 52535430 -69308426 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 985 463 198 0 34 chr11 52535480 52535569 -69308287 - B4 SINE B4 -69 223 138 6 985 342 0 0 0 chr11 52535579 52535617 -69308239 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 985 378 253 0 0 chr11 52535627 52535702 -69308154 - B4 SINE B4 -217 75 1 6 985 525 32 0 0 chr11 52536559 52536622 -69307234 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 985 310 315 26 53 chr11 52536623 52536737 -69307119 - PB1D10 SINE Alu -6 111 1 6 985 384 276 13 0 chr11 52537400 52537476 -69306380 + PB1D10 SINE Alu 2 78 -39 6 985 387 0 0 0 chr11 52537907 52537950 -69305906 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 985 233 119 24 0 chr11 52538063 52538105 -69305751 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 6 985 333 320 78 6 chr11 52538512 52538691 -69305165 - MIRb SINE MIR -23 245 54 6 985 264 322 46 0 chr11 52539085 52539172 -69304684 + L2b LINE L2 3107 3197 -178 7 985 699 224 103 10 chr11 52539640 52539834 -69304022 - B3 SINE B2 0 216 5 7 985 3017 168 58 23 chr11 52540046 52540618 -69303238 - Lx5 LINE L1 0 7050 6459 7 985 2340 80 26 0 chr11 52540618 52540929 -69302927 - ORR1A2 LTR MaLR -8 319 1 7 985 478 116 0 0 chr11 52540929 52540998 -69302858 - Lx5 LINE L1 -583 6467 6399 7 985 497 301 65 49 chr11 52540998 52541034 -69302822 - B3 SINE B2 -17 199 165 7 985 201 39 0 0 chr11 52541034 52541060 -69302796 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 985 516 262 103 15 chr11 52541060 52541208 -69302648 - B3A SINE B2 -30 168 12 7 985 411 340 76 29 chr11 52541460 52541763 -69302093 + L1M5 LINE L1 2247 2570 -3576 7 985 273 309 10 60 chr11 52541784 52541884 -69301972 + ID_B1 SINE B4 104 198 -26 7 985 288 276 106 38 chr11 52542012 52542144 -69301712 - MLT1A0 LTR MaLR 0 365 225 7 985 574 284 50 76 chr11 52542334 52542366 -69301490 - B2_Mm2 SINE B2 -2 193 153 7 985 1675 196 34 52 chr11 52542366 52542749 -69301107 - ORR1C1 LTR MaLR 0 378 3 8 985 924 246 1 1 chr11 52542749 52542914 -69300942 - B3A SINE B2 -35 163 1 7 985 229 208 40 27 chr11 52543002 52543076 -69300780 + L1MD LINE L1 2743 2817 -3329 8 985 454 370 72 7 chr11 52543079 52543357 -69300499 + L1M5 LINE L1 2853 3148 -2998 7 985 1248 282 35 20 chr11 52543401 52543749 -69300107 - ORR1E LTR MaLR -6 353 1 8 985 396 291 45 0 chr11 52543839 52543949 -69299907 + RCHARR1 DNA MER1_type 63 177 -797 8 985 339 213 0 0 chr11 52544014 52544089 -69299767 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 985 516 250 35 0 chr11 52544159 52544275 -69299581 + B4A SINE B4 3 122 -170 8 985 396 218 181 105 chr11 52544303 52544480 -69299376 + B4A SINE B4 67 234 -58 8 985 644 280 28 33 chr11 52544480 52544661 -69299195 + B3A SINE B2 3 182 -16 8 985 396 218 181 105 chr11 52544661 52544693 -69299163 + B4A SINE B4 235 292 0 8 985 616 219 99 12 chr11 52545202 52545364 -69298492 - ORR1E LTR MaLR -2 368 193 8 985 314 213 11 0 chr11 52545369 52545463 -69298393 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 985 429 66 0 0 chr11 52545515 52545576 -69298280 + (GA)n Simple_repeat Simple_repeat 1 61 0 9 985 896 204 16 5 chr11 52545576 52545763 -69298093 - ORR1E LTR MaLR -168 191 3 8 985 221 75 25 0 chr11 52546060 52546100 -69297756 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 9 985 1252 48 0 0 chr11 52546100 52546246 -69297610 - B1_Mus2 SINE Alu 0 147 2 9 985 625 241 146 0 chr11 52546278 52546436 -69297420 - B3A SINE B2 -15 183 3 9 985 1205 214 143 33 chr11 52546508 52546837 -69297019 - MTEb LTR MaLR -5 374 10 9 985 22 35 0 0 chr11 52547191 52547220 -69296636 + AT_rich Low_complexity Low_complexity 1 29 0 9 985 225 0 0 0 chr11 52547220 52547245 -69296611 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 985 758 235 0 0 chr11 52547255 52547387 -69296469 - RSINE1 SINE B4 -30 135 4 9 985 1369 210 26 124 chr11 52547680 52548098 -69295758 + MTE2a LTR MaLR 3 379 0 9 985 379 351 182 35 chr11 52548940 52549240 -69294616 + LTR16C LTR ERVL 17 364 -125 9 985 1597 252 5 31 chr11 52549240 52549629 -69294227 - MTEa LTR MaLR 0 379 1 1 985 301 336 136 41 chr11 52549629 52549742 -69294114 + LTR16C LTR ERVL 365 485 -4 9 985 205 176 59 74 chr11 52551035 52551170 -69292686 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 1 985 737 214 92 19 chr11 52551608 52551771 -69292085 + B3A SINE B2 1 174 -24 1 985 198 0 0 0 chr11 52551771 52551793 -69292063 + (CCCA)n Simple_repeat Simple_repeat 4 25 0 1 985 451 298 83 17 chr11 52551793 52551810 -69292046 + B2_Mm2 SINE B2 170 192 -3 1 985 789 159 103 49 chr11 52551813 52551998 -69291858 + B2_Mm2 SINE B2 1 195 0 1 985 250 100 60 0 chr11 52553198 52553248 -69290608 + GA-rich Low_complexity Low_complexity 2 54 0 1 985 1181 228 65 24 chr11 52553257 52553549 -69290307 - MTEa LTR MaLR -75 304 1 1 985 387 248 11 0 chr11 52553842 52553935 -69289921 + PB1D10 SINE Alu 20 120 0 1 985 635 325 9 28 chr11 52553951 52554032 -69289824 + B4A SINE B4 5 84 -208 1 985 369 0 0 0 chr11 52554032 52554073 -69289783 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 985 635 325 9 28 chr11 52554073 52554206 -69289650 + B4A SINE B4 85 215 -77 1 985 2742 256 108 133 chr11 52554253 52555189 -69288667 + L1MC1 LINE L1 2945 3949 -2197 1 985 237 270 60 141 chr11 52555189 52555212 -69288644 - YREP_Mm Unknown Unknown -1460 352 195 1 985 320 250 7 172 chr11 52555212 52555357 -69288499 + MT2B LTR ERVL 155 275 -326 1 985 715 215 20 40 chr11 52555227 52555360 -69288496 + B1_Mur2 SINE Alu 1 134 -15 1 985 432 0 0 0 chr11 52555360 52555408 -69288448 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 985 270 0 0 0 chr11 52555408 52555437 -69288419 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 985 237 270 60 141 chr11 52555437 52555449 -69288407 - YREP_Mm Unknown Unknown -1621 191 184 1 985 2742 256 108 133 chr11 52555452 52556356 -69287500 + L1MC1 LINE L1 3949 4922 -1224 1 985 233 306 66 0 chr11 52556740 52556861 -69286995 + L1MC1 LINE L1 5339 5467 -866 1 985 758 148 14 0 chr11 52556870 52557012 -69286844 - RLTR31_Mur LTR ERVK -409 144 1 1 985 381 131 0 0 chr11 52557012 52557073 -69286783 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 985 894 267 76 13 chr11 52557076 52557391 -69286465 + L1MC1 LINE L1 5586 5920 -413 1 985 360 291 148 38 chr11 52557712 52557948 -69285908 + L1MC1 LINE L1 5979 6240 -93 1 985 291 203 42 17 chr11 52557997 52558117 -69285739 + CT-rich Low_complexity Low_complexity 6 128 0 1 985 188 280 0 57 chr11 52558172 52558225 -69285631 + L2b LINE L2 1661 1710 -1709 1 985 383 301 163 46 chr11 52558445 52558751 -69285105 - Tigger15a DNA TcMar -227 488 147 1 985 180 0 0 0 chr11 52558824 52558844 -69285012 + (T)n Simple_repeat Simple_repeat 1 20 0 1 985 365 316 53 0 chr11 52559095 52559228 -69284628 - Charlie12 DNA MER1_type -2700 173 34 1 985 625 295 23 3 chr11 52559308 52559516 -69284340 - B3A SINE B2 -1 215 1 1 985 216 0 0 0 chr11 52559766 52559790 -69284066 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 123 1215 36 0 0 chr11 52559790 52559928 -69283928 - B1_Mus2 SINE Alu -9 138 1 1 986 211 324 52 52 chr11 52560211 52560364 -69283492 + L2b LINE L2 2484 2636 -783 1 986 281 298 65 19 chr11 52560605 52560759 -69283097 + L2b LINE L2 2992 3152 -223 1 986 229 373 39 16 chr11 52560846 52560974 -69282882 + RMER15 LTR ERVL 432 562 -13 1 986 234 91 0 0 chr11 52561270 52561303 -69282553 + (CAGGG)n Simple_repeat Simple_repeat 1 33 0 1 986 497 342 107 50 chr11 52562200 52562309 -69281547 - Lx8 LINE L1 -30 7443 7332 1 986 432 0 0 0 chr11 52562309 52562357 -69281499 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 986 2817 183 64 22 chr11 52562357 52562994 -69280862 - Lx9 LINE L1 -184 7460 6797 1 986 195 26 103 0 chr11 52563058 52563097 -69280759 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 986 1265 249 25 60 chr11 52563467 52563835 -69280021 + ORR1E LTR MaLR 5 359 0 1 986 446 329 78 52 chr11 52564415 52564723 -69279133 - Tigger8 DNA MER2_type -161 505 190 1 986 296 310 35 0 chr11 52564984 52565071 -69278785 + B3A SINE B2 84 173 -25 1 986 249 327 65 37 chr11 52565186 52565294 -69278562 - MLT1N2 LTR MaLR -86 476 366 1 986 378 204 102 0 chr11 52565458 52565546 -69278310 - RSINE1 SINE B4 -8 157 61 1 986 470 260 19 19 chr11 52565671 52565777 -69278079 + RSINE1 SINE B4 2 107 -58 1 986 233 29 29 0 chr11 52565895 52565929 -69277927 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 986 647 231 88 130 chr11 52567108 52567123 -69276733 + B4 SINE B4 10 22 -270 1 986 2427 77 9 15 chr11 52567123 52567452 -69276404 + ORR1A2 LTR MaLR 1 327 0 1 986 647 236 83 120 chr11 52567452 52567744 -69276112 + B4 SINE B4 23 281 -11 1 986 23 0 0 0 chr11 52568024 52568047 -69275809 + AT_rich Low_complexity Low_complexity 1 23 0 1 986 410 245 58 63 chr11 52568071 52568276 -69275580 + L1MD2 LINE L1 5122 5325 -821 1 986 374 247 111 0 chr11 52568284 52568365 -69275491 + B1F SINE Alu 5 94 -55 1 986 330 250 101 92 chr11 52568445 52568564 -69275292 + B4A SINE B4 32 151 -141 1 986 274 268 11 35 chr11 52568680 52568854 -69275002 + CT-rich Low_complexity Low_complexity 4 173 0 1 986 950 298 85 78 chr11 52568878 52569073 -69274783 + L1MD2 LINE L1 5384 5587 -772 1 986 288 0 0 0 chr11 52569073 52569105 -69274751 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 986 950 298 85 78 chr11 52569105 52569429 -69274427 + L1MD2 LINE L1 5588 5911 -448 1 986 1445 60 27 0 chr11 52569429 52569612 -69274244 - B2_Mm2 SINE B2 -5 190 3 1 986 950 298 85 78 chr11 52569612 52569703 -69274153 + L1MD2 LINE L1 5912 5999 -360 1 986 814 281 60 45 chr11 52569860 52570087 -69273769 + B4A SINE B4 2 234 -58 1 986 1092 169 81 10 chr11 52570087 52570296 -69273560 - URR1B DNA MER1_type -1 224 1 1 986 814 281 60 45 chr11 52570296 52570336 -69273520 + B4A SINE B4 235 273 -19 1 986 950 256 0 0 chr11 52570395 52570575 -69273281 + B3A SINE B2 1 180 -18 1 986 1584 246 49 21 chr11 52570780 52571211 -69272645 + Charlie21a DNA MER1_type 311 753 -460 1 986 466 283 171 10 chr11 52571232 52571425 -69272431 - ID_B1 SINE B4 0 224 1 1 986 293 235 22 35 chr11 52572841 52573074 -69270782 + (TTAGGG)n Simple_repeat Simple_repeat 1 229 0 1 986 654 281 45 48 chr11 52574170 52574461 -69269395 + B4A SINE B4 3 292 0 1 986 321 147 45 9 chr11 52574461 52574571 -69269285 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 986 1148 213 88 97 chr11 52574753 52575174 -69268682 - RMER10A LTR ERVL -25 417 1 1 986 201 196 0 0 chr11 52575222 52575273 -69268583 + C-rich Low_complexity Low_complexity 1 51 0 1 986 369 158 0 0 chr11 52575282 52575339 -69268517 + B3 SINE B2 2 58 -158 1 986 524 172 21 0 chr11 52575337 52575430 -69268426 - B3 SINE B2 -75 141 47 1 986 713 217 57 44 chr11 52575432 52575591 -69268265 + B3A SINE B2 38 198 0 1 986 246 162 0 0 chr11 52575636 52575673 -69268183 + B1F SINE Alu 105 141 -8 1 986 1690 26 0 0 chr11 52575863 52576053 -69267803 + B2_Mm1t SINE B2 2 191 -2 1 986 699 12 0 0 chr11 52577483 52577563 -69266293 + (GAGAA)n Simple_repeat Simple_repeat 5 84 0 1 986 509 241 218 0 chr11 52581023 52581156 -69262700 + RSINE1 SINE B4 3 164 -1 1 986 292 325 99 25 chr11 52582945 52583106 -69260750 + MIR SINE MIR 80 252 -10 1 986 239 207 52 0 chr11 52584606 52584664 -69259192 - RCHARR1 DNA MER1_type -74 900 840 1 986 430 223 139 78 chr11 52584683 52584863 -69258993 - B3A SINE B2 -7 191 1 1 986 2761 233 69 24 chr11 52584864 52585626 -69258230 - RCHARR1 DNA MER1_type -122 852 6 1 986 804 224 12 6 chr11 52585879 52586041 -69257815 + RSINE1 SINE B4 3 165 0 1 986 288 286 262 0 chr11 52586421 52586547 -69257309 - RSINE1 SINE B4 -1 164 6 1 986 577 245 201 43 chr11 52587016 52587225 -69256631 - B4 SINE B4 0 292 51 1 986 527 301 75 24 chr11 52587767 52588019 -69255837 - MamRep434 DNA TcMar -4 422 158 1 986 510 238 4 62 chr11 52589440 52589636 -69254220 - B4A SINE B4 -15 277 2 1 986 1252 105 124 10 chr11 52589683 52589885 -69253971 + URR1B DNA MER1_type 1 225 0 1 986 618 264 107 0 chr11 52589998 52590067 -69253789 - B3A SINE B2 -1 197 128 1 986 1298 18 24 0 chr11 52590067 52590236 -69253620 + (GA)n Simple_repeat Simple_repeat 2 174 0 1 986 618 264 107 0 chr11 52590236 52590344 -69253512 - B3A SINE B2 -71 127 2 1 986 405 0 0 0 chr11 52590829 52590874 -69252982 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 986 530 265 71 52 chr11 52590875 52591030 -69252826 - B4A SINE B4 -26 266 109 1 986 221 200 19 74 chr11 52591110 52591164 -69252692 - B4A SINE B4 -214 78 28 1 986 568 231 110 47 chr11 52591857 52592048 -69251808 + B3 SINE B2 1 203 -13 1 986 291 232 0 0 chr11 52592048 52592130 -69251726 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 986 2533 108 35 55 chr11 52592686 52593088 -69250768 + ORR1B1 LTR MaLR 1 394 0 1 986 1139 213 117 130 chr11 52593831 52594215 -69249641 + MTE2b LTR MaLR 1 379 0 1 986 317 323 10 41 chr11 52595190 52595287 -69248569 + ID_B1 SINE B4 3 96 -128 1 986 581 181 0 0 chr11 52595326 52595420 -69248436 - PB1D9 SINE Alu 0 120 27 1 986 223 250 0 0 chr11 52595748 52595792 -69248064 - PB1D7 SINE Alu -30 90 47 1 986 349 152 0 17 chr11 52595833 52595893 -69247963 - ID4 SINE ID -21 62 4 1 986 212 200 22 0 chr11 52596980 52597025 -69246831 + B4 SINE B4 2 47 -245 1 986 316 310 164 17 chr11 52598111 52598288 -69245568 + MLT1A1 LTR MaLR 1 203 -205 1 986 348 311 0 10 chr11 52598306 52598410 -69245446 + MLT1A1 LTR MaLR 292 394 -14 1 986 216 149 0 0 chr11 52602100 52602147 -69241709 + (CATG)n Simple_repeat Simple_repeat 2 48 0 1 986 810 174 27 18 chr11 52602336 52602493 -69241363 + ID_B1 SINE B4 88 251 -41 1 986 1016 240 44 0 chr11 52603194 52603398 -69240458 + ID_B1 SINE B4 12 224 0 1 986 873 133 0 29 chr11 52604217 52604387 -69239469 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 1 986 724 228 13 27 chr11 52604457 52604606 -69239250 - B1_Mur2 SINE Alu -2 147 1 1 986 233 261 13 80 chr11 52604609 52604684 -69239172 - PB1D10 SINE Alu -7 110 41 1 986 798 239 148 4 chr11 52604737 52604981 -69238875 - B4A SINE B4 -12 280 2 1 986 1309 85 57 0 chr11 52605503 52605680 -69238176 + B2_Mm2 SINE B2 2 188 -7 1 986 752 272 6 6 chr11 52605720 52605883 -69237973 - ID_B1 SINE B4 -11 213 51 1 986 360 0 0 0 chr11 52605950 52605990 -69237866 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 986 2446 167 27 5 chr11 52606611 52607015 -69236841 + MTC LTR MaLR 1 413 -8 1 986 687 99 0 0 chr11 52607022 52607123 -69236733 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1 986 239 140 20 0 chr11 52607136 52607186 -69236670 + CT-rich Low_complexity Low_complexity 3 53 0 2 986 205 304 25 12 chr11 52607222 52607302 -69236554 + (CCTA)n Simple_repeat Simple_repeat 4 84 0 2 986 185 132 26 0 chr11 52607303 52607341 -69236515 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 2 986 594 82 10 20 chr11 52607366 52607466 -69236390 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 2 986 1054 255 27 34 chr11 52607475 52607767 -69236089 - B4A SINE B4 0 292 3 2 986 326 134 15 0 chr11 52608700 52608767 -69235089 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 986 185 389 43 14 chr11 52609413 52609554 -69234302 - MIR SINE MIR -29 233 89 2 986 395 334 98 32 chr11 52609773 52610120 -69233736 - MLT1A1 LTR MaLR -28 380 19 2 986 404 288 30 24 chr11 52610256 52610423 -69233433 - L1ME3A LINE L1 -32 6141 5974 2 986 969 279 29 29 chr11 52611015 52611358 -69232498 - Lx7 LINE L1 -375 7321 6979 2 986 300 247 19 52 chr11 52611439 52611543 -69232313 + PB1D9 SINE Alu 51 149 0 2 986 849 274 5 31 chr11 52611611 52611833 -69232023 - ID_B1 SINE B4 -1 223 8 2 986 233 152 0 21 chr11 52612131 52612178 -69231678 - L1MEg LINE L1 -799 5347 5302 2 986 444 250 155 8 chr11 52612325 52612454 -69231402 + ID_B1 SINE B4 15 162 -62 2 986 380 297 38 23 chr11 52612670 52612801 -69231055 - L1MEg LINE L1 -1147 4999 4867 2 986 547 269 103 32 chr11 52612839 52613092 -69230764 - L1MEg LINE L1 -2881 3265 2995 2 986 270 183 0 0 chr11 52613582 52613653 -69230203 + CT-rich Low_complexity Low_complexity 2 72 0 2 986 673 251 120 12 chr11 52613697 52613939 -69229917 - B4A SINE B4 -24 268 1 2 986 218 208 0 0 chr11 52614655 52614703 -69229153 + T-rich Low_complexity Low_complexity 1 48 0 2 986 2898 24 0 9 chr11 52614798 52615140 -69228716 - L1Md_F2 LINE L1 -1 6581 6243 2 986 344 331 70 12 chr11 52615612 52615783 -69228073 - L1MEg LINE L1 -4508 1734 1554 2 986 539 306 31 59 chr11 52615817 52615849 -69228007 - B3 SINE B2 0 216 186 2 986 192 40 0 0 chr11 52615849 52615874 -69227982 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 2 986 634 261 7 45 chr11 52615874 52616063 -69227793 - B3A SINE B2 -31 185 1 2 986 321 253 105 29 chr11 52616063 52616234 -69227622 - L1MEg LINE L1 -4697 1545 1362 2 986 308 178 0 14 chr11 52616234 52616308 -69227548 + CT-rich Low_complexity Low_complexity 2 74 0 2 986 798 256 142 12 chr11 52616342 52616758 -69227098 - L1MEg LINE L1 -4912 1330 861 2 986 1476 285 61 3 chr11 52616788 52617165 -69226691 - Lx5 LINE L1 -18 7032 6634 2 986 333 335 37 27 chr11 52617158 52617345 -69226511 - L1MEg LINE L1 -5350 892 704 2 986 1431 229 12 24 chr11 52617759 52618095 -69225761 + MTD LTR MaLR 1 332 -87 2 986 1591 276 77 156 chr11 52618095 52619062 -69224794 - L1M2c LINE L1 -1188 5597 4652 2 986 765 194 7 0 chr11 52619062 52619201 -69224655 - B1_Mus1 SINE Alu -6 142 3 2 986 1591 276 77 156 chr11 52619201 52619767 -69224089 - L1M2c LINE L1 -1188 4651 4096 2 986 682 305 9 19 chr11 52619767 52619981 -69223875 - B3 SINE B2 -4 212 1 2 986 1591 276 77 156 chr11 52619981 52620201 -69223655 - L1M2c LINE L1 -2690 4095 3855 2 986 337 221 80 33 chr11 52620224 52620378 -69223478 - L1M2c LINE L1 -3104 3681 3509 2 986 412 149 34 34 chr11 52620390 52620508 -69223348 + (TATATG)n Simple_repeat Simple_repeat 5 122 0 2 986 604 256 41 52 chr11 52620614 52620808 -69223048 + RMER30 DNA MER1_type 7 198 -4 2 986 1153 314 102 33 chr11 52620816 52622552 -69221304 - L1M2c LINE L1 -3414 3371 1451 2 986 1188 64 0 0 chr11 52623989 52624130 -69219726 + B1_Mm SINE Alu 2 142 -5 2 986 1036 209 19 5 chr11 52624145 52624357 -69219499 - B3 SINE B2 -1 215 1 2 986 21 0 0 0 chr11 52624515 52624536 -69219320 + AT_rich Low_complexity Low_complexity 1 21 0 2 986 426 298 0 0 chr11 52624854 52624958 -69218898 - PB1D7 SINE Alu -16 104 1 2 986 663 261 13 0 chr11 52625216 52625373 -69218483 + RSINE1 SINE B4 3 161 -4 2 986 366 61 0 0 chr11 52625384 52625433 -69218423 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 986 327 169 0 0 chr11 52625432 52625503 -69218353 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 986 271 193 30 0 chr11 52625471 52625606 -69218250 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 2 986 280 253 146 22 chr11 52625610 52625699 -69218157 - B4A SINE B4 -191 101 2 2 986 587 294 40 91 chr11 52626202 52626576 -69217280 - MTE2a LTR MaLR -14 405 39 2 986 1218 70 63 11 chr11 52627516 52627690 -69216166 - B2_Mm2 SINE B2 -8 187 5 2 986 393 309 48 59 chr11 52627713 52627899 -69215957 - B3A SINE B2 0 198 15 2 986 378 0 0 0 chr11 52629828 52629870 -69213986 + (T)n Simple_repeat Simple_repeat 1 42 0 2 986 2631 270 115 31 chr11 52630718 52631614 -69212242 - Lx8 LINE L1 -9 7464 6494 2 986 360 301 40 61 chr11 52632140 52632338 -69211518 + MLT1C LTR MaLR 274 467 0 2 986 323 127 16 0 chr11 52633316 52633379 -69210477 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 986 446 340 36 18 chr11 52633512 52633677 -69210179 - B4A SINE B4 -120 172 5 2 986 225 0 0 0 chr11 52633691 52633716 -69210140 + (T)n Simple_repeat Simple_repeat 1 25 0 2 986 198 0 0 0 chr11 52634552 52634574 -69209282 + (T)n Simple_repeat Simple_repeat 1 22 0 2 986 210 279 178 44 chr11 52634958 52635138 -69208718 - B3 SINE B2 -3 213 10 2 986 513 266 83 14 chr11 52634995 52635140 -69208716 - RSINE1 SINE B4 -2 163 9 2 986 678 243 81 148 chr11 52635286 52635692 -69208164 - MTE2a LTR MaLR 0 379 1 2 986 549 175 0 0 chr11 52637284 52637387 -69206469 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 2 986 489 345 32 14 chr11 52637388 52637670 -69206186 - MT2A LTR ERVL -40 493 207 2 986 229 256 289 0 chr11 52637710 52637800 -69206056 - MTEa LTR MaLR -263 116 1 2 986 3059 34 5 0 chr11 52638221 52638607 -69205249 + MTA_Mm LTR MaLR 1 388 -8 2 986 8740 55 9 4 chr11 52638611 52639703 -69204153 + MTA_Mm-int LTR MaLR 1 1098 0 2 986 3490 20 5 2 chr11 52639703 52640098 -69203758 + MTA_Mm LTR MaLR 1 396 0 2 986 487 212 61 0 chr11 52640296 52640395 -69203461 - PB1D9 SINE Alu -11 109 5 2 986 394 234 154 42 chr11 52641300 52641443 -69202413 - RSINE1 SINE B4 -4 161 3 2 986 263 274 62 21 chr11 52641473 52641570 -69202286 - MIRc SINE MIR -85 183 83 2 986 321 89 0 0 chr11 52641635 52641680 -69202176 + (CTGGGG)n Simple_repeat Simple_repeat 6 50 0 2 986 524 282 37 0 chr11 52641683 52641846 -69202010 + ID_B1 SINE B4 51 219 -5 2 986 1059 153 18 106 chr11 52642113 52642339 -69201517 + B3 SINE B2 1 206 -10 2 986 255 61 0 0 chr11 52642650 52642683 -69201173 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 986 606 232 14 40 chr11 52642708 52642856 -69201000 - RSINE1 SINE B4 -20 145 2 2 986 378 0 0 0 chr11 52644464 52644506 -69199350 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 986 438 319 28 0 chr11 52644507 52644651 -69199205 - RSINE1 SINE B4 -9 156 9 2 986 3192 276 136 25 chr11 52646246 52646833 -69197023 - Lx8 LINE L1 0 7473 6841 2 986 335 186 222 20 chr11 52646833 52646932 -69196924 + PB1D9 SINE Alu 2 120 0 2 986 3192 276 134 28 chr11 52646932 52647657 -69196199 - Lx8 LINE L1 -633 6840 6029 2 986 239 170 0 21 chr11 52647821 52647869 -69195987 - Lx8 LINE L1 -1543 5930 5884 2 986 279 0 0 0 chr11 52648402 52648433 -69195423 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 986 570 264 157 9 chr11 52649042 52649129 -69194727 + B4 SINE B4 4 107 -185 2 986 1045 200 34 14 chr11 52649129 52649337 -69194519 + B3 SINE B2 2 213 -3 2 986 570 264 157 9 chr11 52649337 52649459 -69194397 + B4 SINE B4 108 244 -48 2 986 211 292 0 30 chr11 52649496 52649586 -69194270 + (CATATA)n Simple_repeat Simple_repeat 1 87 0 2 986 300 204 152 19 chr11 52650169 52650274 -69193582 - L1MEg LINE L1 -5267 817 699 2 986 285 312 123 98 chr11 52650485 52650762 -69193094 - MER21B LTR ERV1 -155 708 425 2 986 280 231 51 123 chr11 52650881 52651019 -69192837 - B3 SINE B2 -8 187 60 2 986 342 169 0 0 chr11 52651031 52651096 -69192760 + CT-rich Low_complexity Low_complexity 2 66 0 2 986 237 278 0 0 chr11 52651096 52651150 -69192706 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 986 524 319 32 57 chr11 52651154 52651400 -69192456 + B4A SINE B4 39 278 -14 2 986 223 268 0 40 chr11 52651417 52651491 -69192365 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 2 986 235 346 44 22 chr11 52651918 52652190 -69191666 + L1M5 LINE L1 3007 3284 -2862 2 986 575 269 52 6 chr11 52652335 52652507 -69191349 + B3A SINE B2 1 180 -18 2 986 2814 182 50 20 chr11 52652536 52653135 -69190721 + Lx9 LINE L1 6995 7611 -33 2 986 21 36 0 0 chr11 52653163 52653191 -69190665 + AT_rich Low_complexity Low_complexity 1 28 0 2 986 299 250 135 39 chr11 52653418 52653522 -69190334 + PB1D10 SINE Alu 4 117 0 2 986 419 261 15 8 chr11 52653827 52653958 -69189898 + L1MC4 LINE L1 6454 6585 -1297 2 986 495 0 0 0 chr11 52654216 52654271 -69189585 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 2 986 641 290 94 67 chr11 52654288 52654543 -69189313 + B4 SINE B4 9 270 -22 2 986 189 0 0 0 chr11 52654568 52654589 -69189267 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 986 267 374 35 26 chr11 52655243 52655471 -69188385 + MLT1F-int LTR MaLR 187 416 -1073 2 986 585 349 30 27 chr11 52655836 52656098 -69187758 - MLT2D LTR ERVL -2 412 150 2 986 1282 218 112 19 chr11 52656191 52656514 -69187342 - ORR1D2 LTR MaLR 0 370 18 2 986 1113 313 36 25 chr11 52656710 52657176 -69186680 + L1MC4 LINE L1 7218 7665 -377 2 986 194 0 39 0 chr11 52657276 52657302 -69186554 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 986 1013 71 0 7 chr11 52657302 52657444 -69186412 - B1_Mus1 SINE Alu -2 146 6 2 986 236 231 224 28 chr11 52657556 52657663 -69186193 + L1MC4 LINE L1 7902 8029 -13 2 986 377 217 27 54 chr11 52657716 52657828 -69186028 - ID_B1 SINE B4 -14 210 102 2 986 281 254 40 88 chr11 52657729 52657854 -69186002 - B1_Mur4 SINE Alu -30 120 2 2 986 212 217 22 0 chr11 52657854 52657896 -69185960 - B1F1 SINE Alu -88 61 19 2 986 555 278 26 26 chr11 52658259 52658414 -69185442 + RSINE1 SINE B4 11 165 0 2 986 849 20 0 0 chr11 52658432 52658531 -69185325 + (GA)n Simple_repeat Simple_repeat 2 100 0 2 986 3092 114 13 81 chr11 52658585 52659129 -69184727 + Lx2 LINE L1 6491 6997 0 2 986 211 179 0 0 chr11 52660701 52660740 -69183116 + B1_Mus1 SINE Alu 17 55 -93 2 986 1028 159 71 0 chr11 52660736 52660918 -69182938 - MTC LTR MaLR -226 195 1 2 986 212 234 0 21 chr11 52661106 52661154 -69182702 + B1F2 SINE Alu 10 56 -93 2 986 29 0 0 0 chr11 52661538 52661567 -69182289 + AT_rich Low_complexity Low_complexity 1 29 0 3 986 220 212 57 57 chr11 52661579 52661649 -69182207 - BC1_Mm scRNA scRNA -81 71 2 3 986 425 312 18 61 chr11 52661769 52661933 -69181923 - MLT1D LTR MaLR -8 497 341 3 986 377 239 136 42 chr11 52662675 52662889 -69180967 - MLT1D LTR MaLR -269 236 3 3 986 21 36 0 0 chr11 52662975 52663003 -69180853 + AT_rich Low_complexity Low_complexity 1 28 0 3 986 202 206 29 0 chr11 52663504 52663572 -69180284 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 986 680 202 266 38 chr11 52663572 52663809 -69180047 - B4A SINE B4 0 292 2 3 986 204 139 0 65 chr11 52663941 52663987 -69179869 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 986 886 267 25 109 chr11 52664437 52664840 -69179016 + MTE2a LTR MaLR 6 374 -5 3 986 850 225 28 11 chr11 52665716 52665896 -69177960 + B3A SINE B2 1 183 -15 3 986 731 155 24 1 chr11 52665930 52666078 -69177778 + B1_Mur1 SINE Alu 1 150 0 3 986 25 65 0 0 chr11 52666117 52666163 -69177693 + AT_rich Low_complexity Low_complexity 1 46 0 3 986 266 336 45 9 chr11 52666271 52666382 -69177474 + MIR SINE MIR 117 231 -31 3 986 365 286 149 15 chr11 52666615 52666810 -69177046 - MLT1J1 LTR MaLR -1 443 223 3 986 402 21 0 0 chr11 52668093 52668140 -69175716 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 986 189 0 0 0 chr11 52668140 52668160 -69175696 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 986 1227 43 0 0 chr11 52669465 52669605 -69174251 + B1_Mm SINE Alu 2 141 -6 3 986 183 42 0 0 chr11 52669606 52669630 -69174226 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 986 443 326 7 0 chr11 52669632 52669767 -69174089 - B1F SINE Alu -13 136 1 3 986 188 67 0 32 chr11 52669835 52669866 -69173990 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 3 986 181 268 0 0 chr11 52669908 52669949 -69173907 + L2a LINE L2 3377 3417 -9 3 986 830 276 54 19 chr11 52670043 52670302 -69173554 + B4A SINE B4 21 288 -4 3 986 194 381 81 38 chr11 52671826 52672061 -69171795 + L2a LINE L2 2957 3201 -225 3 986 275 319 115 29 chr11 52672191 52672330 -69171526 - MIRb SINE MIR -11 257 107 3 986 693 309 97 61 chr11 52672515 52672877 -69170979 - MLT1B LTR MaLR 0 390 16 3 986 198 71 0 0 chr11 52672911 52672939 -69170917 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 986 1226 272 39 33 chr11 52672939 52673274 -69170582 - MTE2b LTR MaLR -22 357 21 3 986 231 295 47 39 chr11 52673592 52673719 -69170137 + L3 LINE CR1 3973 4100 -389 3 986 459 35 0 0 chr11 52673727 52673784 -69170072 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 986 324 0 0 0 chr11 52673890 52673926 -69169930 + (T)n Simple_repeat Simple_repeat 1 36 0 3 986 683 252 26 13 chr11 52674271 52674424 -69169432 + ID_B1 SINE B4 1 155 -69 3 986 345 255 0 96 chr11 52674353 52674457 -69169399 + B1_Mus1 SINE Alu 5 98 -50 3 986 278 297 142 0 chr11 52675620 52675775 -69168081 - L1MA8 LINE L1 -2 6289 6113 3 986 2435 92 3 21 chr11 52676258 52676591 -69167265 - ORR1A2 LTR MaLR 0 327 1 3 986 250 268 60 12 chr11 52677032 52677115 -69166741 - MTEa LTR MaLR 0 379 293 3 986 3369 153 35 16 chr11 52677137 52677700 -69166156 - Lx5 LINE L1 0 7050 6477 3 986 285 146 0 0 chr11 52678600 52678648 -69165208 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 986 195 129 0 0 chr11 52678661 52678692 -69165164 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 986 1388 244 113 0 chr11 52679691 52680027 -69163829 - MTE2a LTR MaLR -1 378 5 3 986 556 284 89 32 chr11 52680296 52680609 -69163247 - L1M6 LINE L1 -534 5844 5514 3 986 420 263 20 0 chr11 52680781 52680880 -69162976 + PB1D10 SINE Alu 17 117 0 3 986 388 292 46 35 chr11 52680890 52681064 -69162792 + MLT2D LTR ERVL 28 203 -211 3 986 652 325 6 99 chr11 52681074 52681388 -69162468 + B4A SINE B4 8 292 0 3 986 480 309 41 41 chr11 52681391 52681563 -69162293 + MLT2D LTR ERVL 188 359 -55 3 986 349 275 12 0 chr11 52681703 52681783 -69162073 - ID4_ SINE ID -1 82 2 3 986 342 0 0 0 chr11 52682003 52682041 -69161815 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 986 315 0 0 0 chr11 52682041 52682075 -69161781 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 986 1213 226 76 76 chr11 52682081 52682353 -69161503 - ORR1E LTR MaLR 0 359 83 3 986 1490 145 92 119 chr11 52682353 52682689 -69161167 + ORR1A4 LTR MaLR 3 329 0 3 986 1213 226 76 76 chr11 52682689 52682771 -69161085 - ORR1E LTR MaLR -277 82 5 3 986 1524 186 154 9 chr11 52683101 52683426 -69160430 - MTD LTR MaLR 0 419 48 3 986 229 250 44 33 chr11 52684207 52684298 -69159558 - L1M6 LINE L1 -4803 1693 1602 3 986 540 0 0 0 chr11 52684823 52684883 -69158973 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 986 1020 115 0 0 chr11 52684883 52685022 -69158834 - B1_Mur3 SINE Alu -2 147 9 3 986 606 252 0 43 chr11 52684887 52685049 -69158807 - ID_B1 SINE B4 -6 218 64 3 986 450 333 77 27 chr11 52685357 52685579 -69158277 - RMER15 LTR ERVL -68 507 275 3 986 628 253 139 17 chr11 52686101 52686274 -69157582 + B3A SINE B2 2 195 -3 3 986 231 273 15 29 chr11 52686854 52686922 -69156934 + MLT1M LTR MaLR 17 83 -589 3 986 383 368 62 10 chr11 52687613 52687808 -69156048 - MLT1M LTR MaLR -461 211 7 3 986 678 284 80 53 chr11 52687945 52688315 -69155541 + ORR1E LTR MaLR 1 370 0 3 986 356 370 24 12 chr11 52689295 52689459 -69154397 + MIRb SINE MIR 63 228 -40 3 986 180 125 0 0 chr11 52690040 52690072 -69153784 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 3 986 276 237 12 95 chr11 52690550 52690634 -69153222 - L2a LINE L2 -4 3422 3346 3 987 234 0 0 0 chr11 52691106 52691132 -69152724 + (ATATG)n Simple_repeat Simple_repeat 2 27 0 3 987 447 68 0 0 chr11 52691596 52691655 -69152201 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 987 180 0 0 0 chr11 52692096 52692116 -69151740 + (A)n Simple_repeat Simple_repeat 1 20 0 3 987 598 273 73 62 chr11 52692622 52692895 -69150961 + B4 SINE B4 1 276 -16 3 987 306 0 0 0 chr11 52692932 52692966 -69150890 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 987 542 263 118 56 chr11 52693238 52693399 -69150457 + B3A SINE B2 17 187 -11 3 987 257 75 25 0 chr11 52693400 52693440 -69150416 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 987 390 314 79 69 chr11 52694452 52694654 -69149202 + MER63A DNA AcHobo 7 210 0 3 987 322 331 63 53 chr11 52694966 52695144 -69148712 - MLT1E2 LTR MaLR -213 467 299 3 987 1384 241 42 98 chr11 52695568 52695954 -69147902 + MTE2a LTR MaLR 2 365 -14 3 987 262 258 66 22 chr11 52696103 52696194 -69147662 + MTE2a LTR MaLR 248 359 -20 3 987 1317 269 48 45 chr11 52696346 52696723 -69147133 + MTEa LTR MaLR 2 379 0 3 987 8515 120 46 87 chr11 52696820 52698888 -69144968 - Lx2B LINE L1 -8 6992 4956 3 987 975 69 8 8 chr11 52698888 52699019 -69144837 - B1_Mus1 SINE Alu 0 148 18 3 987 8515 120 46 87 chr11 52699019 52699420 -69144436 - Lx2B LINE L1 -8 4955 4559 3 987 477 183 0 11 chr11 52699413 52699507 -69144349 - MusHAL1 LINE L1 -2079 633 541 3 987 549 0 0 0 chr11 52699848 52699909 -69143947 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 987 550 231 10 0 chr11 52699925 52700029 -69143827 - RSINE1 SINE B4 -19 146 42 3 987 195 80 39 39 chr11 52700797 52700849 -69143007 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 3 987 189 264 0 86 chr11 52702190 52702248 -69141608 + L2 LINE L2 73 125 -3294 3 987 438 20 0 0 chr11 52702376 52702427 -69141429 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 987 258 56 0 0 chr11 52702427 52702463 -69141393 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 987 189 0 0 0 chr11 52702557 52702578 -69141278 + (A)n Simple_repeat Simple_repeat 1 21 0 3 987 594 304 38 0 chr11 52702590 52702748 -69141108 + B4 SINE B4 123 286 -6 3 987 723 235 34 73 chr11 52705343 52705444 -69138412 - RCHARR1 DNA MER1_type 0 974 873 3 987 433 278 97 27 chr11 52705444 52705629 -69138227 + B3A SINE B2 1 198 0 3 987 723 235 34 73 chr11 52705629 52705761 -69138095 - RCHARR1 DNA MER1_type -102 872 750 3 987 1718 219 48 19 chr11 52705786 52706158 -69137698 - RCHARR1 DNA MER1_type -543 431 49 3 987 832 256 11 17 chr11 52706175 52706350 -69137506 + B3A SINE B2 5 178 -20 3 987 532 323 146 17 chr11 52707464 52707751 -69136105 - RMER15 LTR ERVL -17 558 235 3 987 2316 153 29 22 chr11 52707744 52708168 -69135688 - ORR1B1 LTR MaLR -6 388 1 3 987 204 261 67 3 chr11 52708200 52708275 -69135581 + MIRb SINE MIR 98 183 -85 3 987 376 274 78 0 chr11 52709194 52709296 -69134560 - PB1D10 SINE Alu -7 110 1 3 987 295 333 53 0 chr11 52709512 52709626 -69134230 + MamRep434 DNA TcMar 307 426 0 3 987 911 246 92 89 chr11 52710111 52710482 -69133374 - MTE2a LTR MaLR -7 372 1 3 987 1032 123 0 27 chr11 52710694 52710844 -69133012 + B1_Mur4 SINE Alu 2 147 -3 3 987 446 160 0 0 chr11 52710937 52711012 -69132844 - ID4 SINE ID -7 76 2 3 987 474 281 9 0 chr11 52711048 52711162 -69132694 + PB1D10 SINE Alu 3 117 0 3 987 297 0 0 0 chr11 52712115 52712148 -69131708 + (A)n Simple_repeat Simple_repeat 1 33 0 3 987 1890 125 29 67 chr11 52712304 52712646 -69131210 - ORR1A4 LTR MaLR 0 329 1 3 987 657 315 92 21 chr11 52712670 52712910 -69130946 - B4A SINE B4 -22 270 14 3 987 351 304 18 9 chr11 52714052 52714165 -69129691 + L2a LINE L2 3312 3425 -1 3 987 429 281 0 11 chr11 52715075 52715211 -69128645 - MIR SINE MIR -94 174 44 3 987 792 154 0 0 chr11 52715484 52715640 -69128216 + (TG)n Simple_repeat Simple_repeat 1 156 0 3 987 216 279 176 37 chr11 52715642 52715673 -69128183 - RSINE1 SINE B4 0 165 139 4 987 909 123 0 16 chr11 52715673 52715855 -69128001 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 987 216 279 176 37 chr11 52715855 52715931 -69127925 - RSINE1 SINE B4 -27 138 44 4 987 345 206 73 0 chr11 52715899 52715967 -69127889 - B4 SINE B4 -219 73 1 4 987 1181 82 0 0 chr11 52716075 52716222 -69127634 - B1_Mus1 SINE Alu 0 148 2 4 987 311 311 130 22 chr11 52716236 52716489 -69127367 - L1MB8 LINE L1 -77 6107 5825 4 987 394 313 60 22 chr11 52716909 52717043 -69126813 + RSINE1 SINE B4 2 140 -25 4 987 450 0 0 0 chr11 52717053 52717103 -69126753 + (TTA)n Simple_repeat Simple_repeat 3 52 0 4 987 1131 59 0 0 chr11 52717256 52717391 -69126465 + B1_Mus1 SINE Alu 3 137 -11 4 987 443 264 44 26 chr11 52717393 52717506 -69126350 + PB1D7 SINE Alu 5 119 -1 4 987 231 271 96 31 chr11 52718929 52719042 -69124814 + MIRb SINE MIR 27 156 -120 4 987 180 0 0 0 chr11 52719042 52719062 -69124794 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 987 780 294 85 11 chr11 52719197 52719469 -69124387 + B4A SINE B4 1 292 0 4 987 312 200 0 0 chr11 52719469 52719549 -69124307 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 987 248 256 12 0 chr11 52719764 52719850 -69124006 + CT-rich Low_complexity Low_complexity 3 89 0 4 987 430 293 180 14 chr11 52720739 52720950 -69122906 - RMER15 LTR ERVL -18 557 312 4 987 273 213 123 80 chr11 52720981 52721119 -69122737 - RMER15 LTR ERVL -427 148 5 4 987 228 86 0 0 chr11 52721264 52721299 -69122557 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 987 863 178 5 0 chr11 52721580 52721805 -69122051 + CT-rich Low_complexity Low_complexity 1 226 0 4 987 750 286 31 21 chr11 52722943 52723136 -69120720 + B4A SINE B4 2 196 -96 4 987 300 27 0 0 chr11 52723144 52723181 -69120675 + (TTG)n Simple_repeat Simple_repeat 1 37 0 4 987 567 269 54 0 chr11 52724868 52724998 -69118858 - B1_Mur1 SINE Alu -12 137 1 4 987 497 304 97 23 chr11 52725251 52725426 -69118430 + B3 SINE B2 2 189 -27 4 987 1165 81 0 0 chr11 52725798 52725946 -69117910 + B1_Mus1 SINE Alu 1 148 0 4 987 243 113 16 31 chr11 52725957 52726021 -69117835 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 987 945 278 52 48 chr11 52726497 52726788 -69117068 + B4A SINE B4 1 292 0 4 987 550 307 21 28 chr11 52726986 52727130 -69116726 + RSINE1 SINE B4 23 165 0 4 987 397 283 25 8 chr11 52727202 52727323 -69116533 - MLT1A0 LTR MaLR -142 223 101 4 987 264 200 23 23 chr11 52727450 52727537 -69116319 - MER96B DNA hAT -68 349 263 4 987 210 118 0 0 chr11 52727656 52727690 -69116166 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 987 23 33 0 0 chr11 52727717 52727747 -69116109 + AT_rich Low_complexity Low_complexity 1 30 0 4 987 442 317 7 28 chr11 52728180 52728323 -69115533 + RSINE1 SINE B4 3 142 -23 4 987 435 38 0 0 chr11 52728326 52728379 -69115477 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 987 390 299 49 42 chr11 52728467 52728610 -69115246 - ID_B1 SINE B4 0 224 81 4 987 726 228 141 16 chr11 52729015 52729207 -69114649 - B3 SINE B2 0 216 1 4 987 367 322 65 43 chr11 52730312 52730557 -69113299 - RMER15 LTR ERVL -2 573 274 4 987 1165 68 14 0 chr11 52730717 52730863 -69112993 + B1_Mus1 SINE Alu 1 148 0 4 987 265 59 19 38 chr11 52730871 52730924 -69112932 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 4 987 459 0 0 0 chr11 52732149 52732200 -69111656 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 987 215 182 73 0 chr11 52733759 52733814 -69110042 + A-rich Low_complexity Low_complexity 2 60 0 4 987 358 312 93 8 chr11 52734444 52734573 -69109283 - MTEa LTR MaLR -189 190 51 4 987 390 74 0 0 chr11 52734624 52734678 -69109178 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 987 445 252 8 13 chr11 52734956 52735058 -69108798 - RSINE1 SINE B4 -56 109 4 4 987 383 286 0 39 chr11 52735330 52735432 -69108424 + ID_B1 SINE B4 117 214 -10 4 987 345 256 98 152 chr11 52735451 52735695 -69108161 - MER31B LTR ERV1 -31 435 205 4 987 1201 228 170 19 chr11 52738164 52738488 -69105368 - MTE2b LTR MaLR 0 379 7 4 987 254 339 115 0 chr11 52738576 52738706 -69105150 - MIR3 SINE MIR -18 190 46 4 987 462 49 0 0 chr11 52738866 52738927 -69104929 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 4 987 455 276 61 70 chr11 52739150 52739505 -69104351 - ORR1E LTR MaLR -10 369 31 4 987 3385 284 133 65 chr11 52739487 52740030 -69103826 - ORR1E-int LTR MaLR -24 1556 1053 4 987 1092 128 0 0 chr11 52740030 52740179 -69103677 - B1_Mur4 SINE Alu 0 150 2 4 987 3385 284 133 65 chr11 52740179 52740963 -69102893 - ORR1E-int LTR MaLR -528 1052 139 4 987 663 288 66 129 chr11 52741045 52741424 -69102432 - ORR1E LTR MaLR -4 355 1 4 987 214 322 47 62 chr11 52741631 52741760 -69102096 + L2c LINE L2 3256 3382 -5 4 987 840 242 103 49 chr11 52744395 52744741 -69099115 - MTEa LTR MaLR -10 369 16 4 987 390 21 0 0 chr11 52745203 52745250 -69098606 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 987 634 250 62 25 chr11 52745250 52745410 -69098446 - B3A SINE B2 -28 170 5 4 987 243 0 0 0 chr11 52745536 52745563 -69098293 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 987 544 304 53 10 chr11 52746133 52746435 -69097421 - L1MA8 LINE L1 -51 6240 5926 4 987 931 117 0 0 chr11 52746438 52746566 -69097290 + B1_Mus1 SINE Alu 1 128 -20 4 987 331 169 20 101 chr11 52746484 52746583 -69097273 + RLTR25A LTR ERVK 522 612 -491 4 987 302 226 126 21 chr11 52746585 52746680 -69097176 - L1MA8 LINE L1 -356 5935 5831 4 987 732 194 202 17 chr11 52746894 52747067 -69096789 + ID_B1 SINE B4 17 221 -3 4 987 614 181 67 0 chr11 52747125 52747274 -69096582 + Lx5 LINE L1 6884 7042 -8 4 987 477 163 0 0 chr11 52747521 52747613 -69096243 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 987 693 289 76 15 chr11 52748707 52748904 -69094952 + B4 SINE B4 3 211 -81 4 987 1422 266 114 42 chr11 52748961 52749506 -69094350 - Lx8 LINE L1 -467 7006 6423 4 987 408 88 0 0 chr11 52749832 52749889 -69093967 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 987 319 281 84 42 chr11 52750579 52750698 -69093158 - HAL1-3A_ME LINE L1 -817 2041 1918 4 987 192 179 0 0 chr11 52750719 52750758 -69093098 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 987 606 281 124 10 chr11 52750758 52750952 -69092904 - B4 SINE B4 -69 223 8 4 987 419 202 216 29 chr11 52751401 52751491 -69092365 + B4 SINE B4 3 113 -179 4 987 231 36 0 0 chr11 52751491 52751519 -69092337 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 987 419 202 216 29 chr11 52751519 52751530 -69092326 + B4 SINE B4 114 123 -169 4 987 669 302 58 21 chr11 52751680 52751920 -69091936 + MIR SINE MIR 14 262 0 4 987 249 108 0 0 chr11 52752358 52752395 -69091461 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 987 193 253 87 78 chr11 52752428 52752531 -69091325 + L2b LINE L2 3095 3198 -177 4 987 496 40 0 26 chr11 52752901 52752978 -69090878 + (GA)n Simple_repeat Simple_repeat 1 75 0 4 987 723 44 0 0 chr11 52754162 52754253 -69089603 + (TC)n Simple_repeat Simple_repeat 2 92 0 4 987 443 48 16 0 chr11 52754253 52754314 -69089542 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 987 512 312 27 40 chr11 52754355 52754505 -69089351 - B4 SINE B4 -81 211 64 4 987 799 224 37 22 chr11 52754508 52754691 -69089165 - B3 SINE B2 0 216 7 4 987 385 224 11 34 chr11 52754698 52754786 -69089070 - B4 SINE B4 -199 93 8 4 987 666 198 0 0 chr11 52756141 52756252 -69087604 + PB1D10 SINE Alu 1 111 -6 4 987 306 0 0 0 chr11 52756257 52756291 -69087565 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 987 267 31 0 0 chr11 52756831 52756863 -69086993 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 987 581 262 78 130 chr11 52757063 52757370 -69086486 - B4A SINE B4 0 292 2 4 987 243 258 150 38 chr11 52757437 52757570 -69086286 + MIR3 SINE MIR 34 181 -27 4 987 315 373 35 67 chr11 52758107 52758389 -69085467 + ORR1E LTR MaLR 79 351 -8 4 987 1066 241 29 105 chr11 52758946 52759041 -69084815 + B4A SINE B4 2 95 -197 4 987 1181 181 49 0 chr11 52759041 52759246 -69084610 + B3 SINE B2 1 215 -1 4 987 1066 241 29 105 chr11 52759246 52759465 -69084391 + B4A SINE B4 96 292 0 4 987 243 152 0 0 chr11 52759470 52759516 -69084340 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 987 468 0 0 0 chr11 52759518 52759570 -69084286 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 987 1074 226 30 70 chr11 52761625 52761925 -69081931 + B4A SINE B4 5 292 0 4 987 213 282 94 30 chr11 52762771 52762878 -69080978 + MIR SINE MIR 5 120 -156 4 987 245 363 107 19 chr11 52763019 52763224 -69080632 + LTR16C LTR ERVL 16 238 -251 4 987 445 227 40 40 chr11 52763426 52763527 -69080329 + PB1D10 SINE Alu 1 101 -16 4 987 198 0 0 0 chr11 52765742 52765764 -69078092 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 987 636 208 87 8 chr11 52765764 52765880 -69077976 - RSINE1 SINE B4 -38 127 1 4 987 424 309 31 15 chr11 52765952 52766134 -69077722 + L1M6 LINE L1 1631 1942 -819 4 987 239 173 0 19 chr11 52766314 52766367 -69077489 + GA-rich Low_complexity Low_complexity 1 52 0 4 987 341 350 68 25 chr11 52767108 52767269 -69076587 - MER63A DNA AcHobo -4 206 39 4 987 739 274 21 68 chr11 52767330 52767565 -69076291 + B4 SINE B4 1 224 -68 4 987 264 77 0 0 chr11 52767593 52767632 -69076224 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 987 228 321 88 54 chr11 52767972 52768120 -69075736 + L2b LINE L2 3214 3366 -9 4 987 526 226 28 28 chr11 52768491 52768632 -69075224 - B1F1 SINE Alu -8 141 1 4 987 855 226 53 11 chr11 52769048 52769236 -69074620 + B3A SINE B2 1 196 -2 4 987 245 303 0 15 chr11 52769311 52769378 -69074478 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 987 455 285 101 14 chr11 52769481 52769648 -69074208 - ID_B1 SINE B4 -46 246 75 5 987 510 316 54 45 chr11 52769656 52769991 -69073865 + L1M5 LINE L1 5484 5821 -303 5 987 653 315 155 30 chr11 52770167 52770864 -69072992 + L2c LINE L2 2574 3387 0 5 987 181 286 118 12 chr11 52771726 52771811 -69072045 - MIR SINE MIR -12 250 157 5 987 238 315 276 21 chr11 52773770 52773973 -69069883 - RMER15 LTR ERVL -15 560 306 5 987 209 294 121 30 chr11 52774234 52774350 -69069506 + MIRb SINE MIR 86 216 -52 5 987 2860 43 22 0 chr11 52774365 52774733 -69069123 - L1_Mus1 LINE L1 -520 6047 5672 5 987 1851 53 26 0 chr11 52774733 52774991 -69068865 + L1_Mus1 LINE L1 6325 6567 0 5 987 820 316 64 64 chr11 52776234 52776579 -69067277 - ORR1E LTR MaLR -14 345 1 5 987 186 194 0 0 chr11 52777469 52777505 -69066351 - L3 LINE CR1 -690 3799 3764 5 987 252 323 41 20 chr11 52777848 52777946 -69065910 - MER91A DNA Tip100 -52 144 45 5 987 191 232 69 147 chr11 52777979 52778095 -69065761 + L2a LINE L2 3320 3426 0 5 987 1232 255 63 65 chr11 52778615 52779093 -69064763 + Lx8 LINE L1 6995 7471 -2 5 987 762 290 48 0 chr11 52779347 52779533 -69064323 - ID_B1 SINE B4 -5 219 25 5 987 3809 37 42 0 chr11 52779733 52780189 -69063667 + MT2C_Mm LTR ERVL 1 475 0 5 987 193 245 57 0 chr11 52782179 52782232 -69061624 + L2a LINE L2 2260 2315 -1104 5 987 234 284 105 0 chr11 52782976 52783071 -69060785 + L2a LINE L2 3320 3424 -2 5 987 234 217 0 0 chr11 52783382 52783428 -69060428 - MER45C DNA Tip100 0 953 908 5 987 256 316 40 0 chr11 52783493 52783569 -69060287 - MER45C DNA Tip100 -479 474 396 5 987 522 366 72 55 chr11 52783688 52783995 -69059861 - MER45C DNA Tip100 -641 312 1 5 987 1196 167 51 0 chr11 52784383 52784598 -69059258 - URR1A DNA MER1_type 0 226 1 5 987 344 189 108 32 chr11 52784773 52784866 -69058990 - MTEb LTR MaLR -2 377 278 5 987 442 333 61 5 chr11 52785005 52785219 -69058637 + L1ME1 LINE L1 5364 5589 -590 5 987 492 250 38 69 chr11 52785238 52785397 -69058459 + B3A SINE B2 58 211 -5 5 987 430 240 0 39 chr11 52785398 52785502 -69058354 + L1ME1 LINE L1 5619 5718 -461 5 987 873 259 35 10 chr11 52785506 52785709 -69058147 - ID_B1 SINE B4 -8 216 9 5 987 459 0 0 0 chr11 52785877 52785928 -69057928 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 987 597 250 136 0 chr11 52785928 52786060 -69057796 - B3A SINE B2 -48 150 1 5 987 445 247 126 45 chr11 52786060 52786259 -69057597 + L1ME1 LINE L1 5818 6032 -147 5 987 1182 219 5 0 chr11 52786298 52786513 -69057343 - B3 SINE B2 0 216 1 5 987 414 0 0 0 chr11 52786538 52786584 -69057272 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 987 604 303 6 6 chr11 52786593 52786749 -69057107 - RSINE1 SINE B4 -8 157 2 5 987 264 303 20 0 chr11 52787051 52787150 -69056706 - L1M5 LINE L1 -1527 4619 4519 5 987 324 232 116 0 chr11 52787322 52787434 -69056422 - L1MEg LINE L1 -2962 3184 3060 5 987 715 310 110 58 chr11 52787549 52788148 -69055708 - L1MEg LINE L1 -4771 1471 842 5 987 1326 246 63 39 chr11 52788418 52788781 -69055075 - MTEa LTR MaLR 0 379 8 5 987 225 300 0 0 chr11 52788908 52788968 -69054888 - L1MC4 LINE L1 -17 8025 7966 5 987 283 338 31 15 chr11 52789087 52789299 -69054557 - L1MC4 LINE L1 -296 7586 7391 5 987 1070 217 117 154 chr11 52789300 52789735 -69054121 + MTD LTR MaLR 1 419 0 5 987 1022 303 85 22 chr11 52789738 52790329 -69053527 - L1MC4 LINE L1 -656 7386 6759 5 987 254 345 24 0 chr11 52790472 52790556 -69053300 + MLT2B3 LTR ERVL 12 97 -457 5 987 391 311 47 97 chr11 52790551 52790839 -69053017 + ORR1E LTR MaLR 55 340 -19 5 987 898 202 80 40 chr11 52791911 52792112 -69051744 + B3 SINE B2 8 216 0 5 987 486 0 0 0 chr11 52792288 52792342 -69051514 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 987 216 302 72 109 chr11 52792618 52792811 -69051045 - B2_Mm2 SINE B2 -8 187 2 5 987 25 65 0 0 chr11 52792916 52792962 -69050894 + AT_rich Low_complexity Low_complexity 1 46 0 5 987 3818 249 66 127 chr11 52793035 52793077 -69050779 - L1_Mur3 LINE L1 -1206 4674 4633 5 987 540 106 0 0 chr11 52793077 52793162 -69050694 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 987 3818 249 66 127 chr11 52793162 52793881 -69049975 - L1_Mur3 LINE L1 -1248 4632 3867 5 987 929 67 0 0 chr11 52793881 52794001 -69049855 - B1_Mus2 SINE Alu -10 137 18 5 987 3818 249 66 127 chr11 52794001 52794595 -69049261 - L1_Mur3 LINE L1 -1248 3866 3232 5 987 770 147 36 14 chr11 52794595 52794733 -69049123 - B1_Mur1 SINE Alu -8 141 1 5 987 3818 249 66 127 chr11 52794733 52795109 -69048747 - L1_Mur3 LINE L1 -2649 3231 2901 5 987 206 32 0 31 chr11 52795109 52795141 -69048715 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 987 1220 43 0 0 chr11 52795143 52795284 -69048572 - B1_Mus2 SINE Alu -6 141 1 5 987 3818 249 66 127 chr11 52795284 52795444 -69048412 - L1_Mur3 LINE L1 -2980 2900 2783 5 987 318 292 39 12 chr11 52795469 52795629 -69048227 + L1MEe LINE L1 971 1167 -5058 5 987 207 0 0 0 chr11 52795629 52795652 -69048204 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 5 987 230 342 96 18 chr11 52795652 52795771 -69048085 + L1MEe LINE L1 1168 1299 -4926 5 987 38 22 0 0 chr11 52796191 52796236 -69047620 + AT_rich Low_complexity Low_complexity 1 45 0 5 987 3177 211 31 7 chr11 52796417 52797031 -69046825 + Lx6 LINE L1 6592 7220 -240 5 987 411 256 135 112 chr11 52797238 52797422 -69046434 + L1MEe LINE L1 1786 1985 -4164 5 987 688 269 61 0 chr11 52797422 52797619 -69046237 + B3 SINE B2 2 210 -6 5 987 411 256 135 112 chr11 52797619 52797746 -69046110 + L1MEe LINE L1 1986 2104 -4045 5 987 977 232 33 25 chr11 52797937 52798180 -69045676 + B4A SINE B4 1 245 -47 5 987 337 396 58 45 chr11 52798411 52798787 -69045069 - L1M5 LINE L1 -1142 5004 4624 5 987 298 338 49 36 chr11 52798838 52799062 -69044794 - L1M5 LINE L1 -1623 4523 4297 5 987 300 256 11 89 chr11 52799104 52799194 -69044662 - ID4 SINE ID 0 83 1 5 987 256 271 14 0 chr11 52799210 52799280 -69044576 - B1F SINE Alu -8 141 71 5 987 371 261 43 17 chr11 52799325 52799442 -69044414 - B1F SINE Alu -29 120 1 5 987 528 260 15 95 chr11 52799701 52799722 -69044134 - B2_Mm2 SINE B2 -11 184 165 5 987 297 0 0 0 chr11 52799722 52799755 -69044101 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 987 754 235 23 4 chr11 52799755 52799933 -69043923 - B3 SINE B2 -41 175 1 5 987 926 267 57 122 chr11 52800439 52800840 -69043016 - MTE2a LTR MaLR -1 378 4 5 987 883 211 67 5 chr11 52801020 52801215 -69042641 - B3 SINE B2 -6 210 4 5 987 991 222 138 127 chr11 52801287 52801627 -69042229 - MTE2b LTR MaLR -8 371 28 5 987 822 87 28 44 chr11 52802114 52802295 -69041561 + CT-rich Low_complexity Low_complexity 1 178 0 5 987 6187 124 25 13 chr11 52802621 52802739 -69041117 - Lx LINE L1 -1 6653 6536 5 987 204 40 0 0 chr11 52802739 52802764 -69041092 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 5 987 6187 129 29 14 chr11 52802764 52803835 -69040021 - Lx LINE L1 -119 6535 5190 5 987 8026 65 13 5 chr11 52803829 52805704 -69038152 - L1VL4 LINE L1 -1668 1891 1 5 987 250 200 0 35 chr11 52806149 52806206 -69037650 + ID4 SINE ID 24 78 -5 5 987 416 209 27 0 chr11 52806254 52806349 -69037507 + B4 SINE B4 2 99 -193 5 987 379 252 54 36 chr11 52806372 52806483 -69037373 + B4 SINE B4 179 291 -1 5 987 234 279 0 0 chr11 52806484 52806545 -69037311 + (CACG)n Simple_repeat Simple_repeat 1 61 0 5 987 216 0 0 0 chr11 52807229 52807253 -69036603 + (CCCCAG)n Simple_repeat Simple_repeat 6 29 0 5 987 552 246 194 38 chr11 52807718 52807904 -69035952 + B4A SINE B4 4 218 -74 5 987 804 276 53 24 chr11 52807923 52808131 -69035725 + B3 SINE B2 1 214 -2 5 987 315 0 0 0 chr11 52808253 52808288 -69035568 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 987 378 271 0 47 chr11 52808773 52808901 -69034955 - MLT1A0 LTR MaLR -2 363 242 5 987 1360 194 180 6 chr11 52809014 52809325 -69034531 + MTEa LTR MaLR 1 365 -14 5 987 312 27 0 0 chr11 52811733 52811770 -69032086 + (TTGG)n Simple_repeat Simple_repeat 3 39 0 5 987 447 266 23 61 chr11 52811785 52811917 -69031939 - B1F SINE Alu 0 149 23 5 987 572 262 33 0 chr11 52811807 52811929 -69031927 - ID_B1 SINE B4 -8 216 91 5 987 1863 145 85 23 chr11 52812546 52812898 -69030958 - ORR1D1 LTR MaLR 0 374 1 5 987 369 282 27 9 chr11 52813049 52813160 -69030696 + PB1D10 SINE Alu 5 117 0 5 987 229 286 0 16 chr11 52813163 52813227 -69030629 + GA-rich Low_complexity Low_complexity 3 65 0 5 987 272 288 60 36 chr11 52814512 52814595 -69029261 + L2b LINE L2 3267 3351 -24 5 987 221 260 100 40 chr11 52815676 52815776 -69028080 + MIR SINE MIR 39 144 -118 5 987 1347 143 14 22 chr11 52816202 52816424 -69027432 + URR1B DNA MER1_type 6 225 0 5 987 516 68 0 0 chr11 52817733 52817806 -69026050 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 987 643 269 7 7 chr11 52817811 52817953 -69025903 - B3A SINE B2 -56 142 1 5 987 276 100 0 0 chr11 52818109 52818149 -69025707 + (TTG)n Simple_repeat Simple_repeat 1 40 0 5 987 308 194 0 56 chr11 52818469 52818540 -69025316 + MIR SINE MIR 127 193 -69 5 987 296 337 12 0 chr11 52818646 52818729 -69025127 + MLT2B3 LTR ERVL 11 94 -460 5 987 273 326 62 93 chr11 52818688 52818850 -69025006 + ID_B1 SINE B4 20 176 -48 5 987 285 88 57 29 chr11 52818856 52818926 -69024930 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 5 987 368 307 128 34 chr11 52820533 52820799 -69023057 + B4A SINE B4 2 292 0 5 987 883 152 6 11 chr11 52820845 52821024 -69022832 + (ATATG)n Simple_repeat Simple_repeat 1 178 0 5 987 495 304 84 112 chr11 52821382 52821651 -69022205 + ORR1E LTR MaLR 1 258 -101 5 987 441 0 0 0 chr11 52821651 52821700 -69022156 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 987 495 304 84 112 chr11 52821700 52821786 -69022070 + ORR1E LTR MaLR 259 346 -13 5 123 4481 61 2 12 chr11 52821800 52822366 -69021490 - L1_Mus2 LINE L1 -1 6565 6006 5 988 363 121 0 0 chr11 52824495 52824553 -69019303 + (CAT)n Simple_repeat Simple_repeat 1 58 0 5 988 545 224 28 0 chr11 52824553 52824660 -69019196 - MTD LTR MaLR -309 110 1 5 988 252 0 0 0 chr11 52825492 52825520 -69018336 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 988 470 94 50 17 chr11 52825520 52825639 -69018217 + (CAGA)n Simple_repeat Simple_repeat 2 124 0 5 988 808 269 12 0 chr11 52825643 52825814 -69018042 - B3A SINE B2 -23 175 3 5 988 1933 192 71 11 chr11 52825982 52826361 -69017495 + MTD LTR MaLR 1 402 -17 5 988 441 237 31 0 chr11 52826413 52826510 -69017346 - PB1D10 SINE Alu -8 109 10 5 988 804 269 59 41 chr11 52826850 52827044 -69016812 + MTEa LTR MaLR 20 214 -165 6 988 543 16 0 0 chr11 52827044 52827108 -69016748 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 6 988 804 300 81 46 chr11 52827108 52827171 -69016685 + MTEa LTR MaLR 215 288 -91 6 988 846 201 34 11 chr11 52829064 52829240 -69014616 + B3A SINE B2 1 180 -18 6 988 1109 265 32 125 chr11 52830791 52830904 -69012952 - MTEa LTR MaLR -8 371 291 6 988 357 82 0 0 chr11 52830904 52830953 -69012903 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 988 1124 265 32 125 chr11 52830953 52831248 -69012608 - MTEa LTR MaLR -89 290 1 6 988 277 277 159 15 chr11 52831622 52831754 -69012102 + MIRb SINE MIR 1 151 -117 6 988 909 277 100 50 chr11 52831765 52832065 -69011791 + MTEa LTR MaLR 1 315 -64 6 988 510 17 0 0 chr11 52832251 52832310 -69011546 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 988 480 62 0 0 chr11 52833380 52833444 -69010412 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 988 417 367 106 15 chr11 52833822 52834162 -69009694 - L1ME3B LINE L1 -329 5911 5541 6 988 978 261 90 3 chr11 52834171 52834471 -69009385 - ORR1E LTR MaLR -8 351 26 6 988 820 192 7 40 chr11 52834499 52834651 -69009205 - B1_Mur1 SINE Alu -1 148 2 6 988 660 296 54 29 chr11 52834694 52835148 -69008708 - L1ME3B LINE L1 -762 5478 5013 6 988 353 256 43 28 chr11 52835174 52835315 -69008541 - L1MB8 LINE L1 -24 6154 6012 6 988 249 83 0 0 chr11 52835469 52835505 -69008351 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 6 988 982 101 0 0 chr11 52835602 52835731 -69008125 - B3 SINE B2 -87 129 1 6 988 324 0 0 0 chr11 52836085 52836121 -69007735 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 988 429 268 0 8 chr11 52836122 52836246 -69007610 - L1ME3B LINE L1 -1533 4613 4491 6 988 238 260 52 10 chr11 52836713 52836810 -69007046 - L1ME4a LINE L1 -1 6123 6023 6 988 482 284 113 30 chr11 52837186 52837389 -69006467 - MLT1A0 LTR MaLR -2 363 144 6 988 545 265 68 0 chr11 52837406 52837538 -69006318 - B1F SINE Alu -7 142 2 6 988 878 301 65 50 chr11 52837961 52838424 -69005432 - RMER15 LTR ERVL 0 575 11 6 988 279 157 0 0 chr11 52839264 52839315 -69004541 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 988 1672 196 96 3 chr11 52839586 52839918 -69003938 - ORR1D1 LTR MaLR -1 373 11 6 988 751 225 0 26 chr11 52840597 52840752 -69003104 - RLTR18B LTR ERVK -361 151 1 6 988 858 256 63 0 chr11 52841344 52841551 -69002305 + ID_B1 SINE B4 5 224 0 6 988 252 0 0 0 chr11 52841607 52841635 -69002221 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 988 649 244 8 0 chr11 52841635 52841758 -69002098 - RSINE1 SINE B4 -41 124 1 6 988 29 0 0 0 chr11 52842619 52842648 -69001208 + AT_rich Low_complexity Low_complexity 1 29 0 6 988 243 178 0 22 chr11 52842664 52842710 -69001146 + ZP3AR Satellite Satellite 36 80 -132 6 988 510 182 90 10 chr11 52842671 52842771 -69001085 + B4 SINE B4 1 108 -184 6 988 269 286 12 23 chr11 52842971 52843057 -69000799 + MER44B DNA MER2_type 133 217 -333 6 988 273 182 0 0 chr11 52843057 52843112 -69000744 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 988 609 320 110 43 chr11 52843245 52843526 -69000330 - MER77 LTR ERVL -241 366 67 6 988 1006 130 20 7 chr11 52844398 52844545 -68999311 + B1_Mur4 SINE Alu 1 149 -1 6 988 368 337 52 90 chr11 52844779 52844965 -68998891 - L2b LINE L2 -5 3370 3193 6 988 608 277 202 0 chr11 52844965 52845203 -68998653 + B4A SINE B4 3 288 -4 6 988 369 325 66 49 chr11 52845203 52845510 -68998346 - L2b LINE L2 -183 3192 2889 6 988 279 193 15 17 chr11 52846310 52846376 -68997480 + PB1D10 SINE Alu 10 75 -42 6 988 415 293 169 58 chr11 52846377 52846638 -68997218 + B4A SINE B4 3 292 0 6 988 206 328 0 0 chr11 52846642 52846706 -68997150 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 988 213 39 0 0 chr11 52846718 52846744 -68997112 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 988 374 225 104 24 chr11 52847657 52847755 -68996101 + PB1D10 SINE Alu 21 127 -22 6 988 256 219 81 14 chr11 52848847 52848921 -68994935 - MER20B DNA MER1_type -13 770 692 6 988 767 344 101 10 chr11 52849067 52849475 -68994381 - MER20B DNA MER1_type -297 486 42 6 988 715 273 87 101 chr11 52849909 52850186 -68993670 + B4 SINE B4 20 292 0 6 988 1497 196 79 21 chr11 52851352 52851451 -68992405 - ORR1D1 LTR MaLR -23 351 229 6 988 213 39 0 0 chr11 52851451 52851477 -68992379 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 6 988 1497 196 79 21 chr11 52851477 52851706 -68992150 - ORR1D1 LTR MaLR -146 228 4 6 988 1924 168 101 5 chr11 52851717 52852094 -68991762 - ORR1D1-int LTR MaLR -3 1367 955 6 988 822 284 17 4 chr11 52852087 52852320 -68991536 - MT2A LTR ERVL -294 239 4 6 988 639 163 16 0 chr11 52853730 52853859 -68989997 - Lx9 LINE L1 -7 7637 7507 6 988 683 181 8 8 chr11 52853859 52853993 -68989863 - Lx9 LINE L1 -243 7401 7268 6 988 185 0 40 0 chr11 52854008 52854033 -68989823 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 988 313 292 0 9 chr11 52854266 52854373 -68989483 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 988 354 207 6 71 chr11 52856072 52856411 -68987445 + CT-rich Low_complexity Low_complexity 1 316 0 6 988 638 279 76 0 chr11 52856713 52856871 -68986985 + ID_B1 SINE B4 52 221 -3 6 988 475 319 22 76 chr11 52857296 52857520 -68986336 + HAL1 LINE L1 901 1112 -1395 6 988 713 321 35 21 chr11 52857635 52857921 -68985935 - B4A SINE B4 0 292 3 6 988 307 281 109 64 chr11 52858317 52858427 -68985429 + PB1 SINE Alu 1 115 -12 6 988 1451 55 55 0 chr11 52858465 52858647 -68985209 + B2_Mm1t SINE B2 1 192 -1 6 988 896 239 36 40 chr11 52858751 52858892 -68984964 + ID_B1 SINE B4 2 149 -75 6 988 1325 79 15 36 chr11 52858892 52859088 -68984768 + B2_Mm2 SINE B2 2 193 -2 6 988 896 239 36 40 chr11 52859088 52859168 -68984688 + ID_B1 SINE B4 150 222 -2 6 988 210 143 0 0 chr11 52859292 52859341 -68984515 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 988 309 241 101 0 chr11 52859451 52859530 -68984326 - B4A SINE B4 -199 93 7 6 988 764 238 18 24 chr11 52859941 52860105 -68983751 - RSINE1 SINE B4 0 165 3 6 988 774 105 0 0 chr11 52860776 52860890 -68982966 + (GA)n Simple_repeat Simple_repeat 1 114 0 6 988 565 286 49 25 chr11 52860918 52861132 -68982724 - B4A SINE B4 -7 285 40 6 988 291 253 211 121 chr11 52861170 52861534 -68982322 + MLT1A1 LTR MaLR 1 397 -11 6 988 916 211 102 72 chr11 52862144 52862409 -68981447 + B4 SINE B4 2 274 -18 6 988 342 0 0 0 chr11 52862419 52862457 -68981399 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 988 549 0 0 0 chr11 52863043 52863104 -68980752 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 988 280 294 0 0 chr11 52863570 52863638 -68980218 - MIRc SINE MIR -127 141 74 6 988 369 0 0 0 chr11 52863726 52863767 -68980089 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 988 441 263 49 32 chr11 52866787 52866972 -68976884 + RLTR10D LTR ERVK 172 359 0 6 988 619 292 136 19 chr11 52868718 52868976 -68974880 - B4A SINE B4 -4 288 1 6 988 318 269 75 23 chr11 52868999 52869132 -68974724 - L1ME3A LINE L1 -15 6158 6019 6 988 366 91 0 0 chr11 52872770 52872825 -68971031 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 988 288 0 0 0 chr11 52872885 52872917 -68970939 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 988 304 227 0 11 chr11 52873375 52873553 -68970303 + CT-rich Low_complexity Low_complexity 1 176 0 6 988 22 0 0 0 chr11 52873566 52873588 -68970268 + GC_rich Low_complexity Low_complexity 1 22 0 6 988 598 198 18 0 chr11 52874604 52874715 -68969141 - MTEa LTR MaLR 0 379 267 6 988 244 309 0 70 chr11 52874771 52874886 -68968970 - MTEa LTR MaLR -244 130 24 6 988 562 173 8 8 chr11 52875991 52876125 -68967731 + (CA)n Simple_repeat Simple_repeat 1 134 0 6 988 198 255 20 33 chr11 52876190 52876340 -68967516 + (CATA)n Simple_repeat Simple_repeat 4 151 0 6 988 1122 199 166 62 chr11 52877392 52877730 -68966126 - MTEa LTR MaLR -3 376 4 6 988 235 170 0 36 chr11 52877780 52877835 -68966021 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 988 413 268 41 2 chr11 52878125 52878238 -68965618 - B1F1 SINE Alu -7 143 27 6 988 301 253 0 46 chr11 52878316 52878403 -68965453 - RSINE1 SINE B4 -34 131 49 6 988 291 296 14 14 chr11 52878930 52879002 -68964854 + ID4_ SINE ID 8 79 -4 6 988 1106 239 0 0 chr11 52879518 52879740 -68964116 - ID_B1 SINE B4 0 224 3 6 988 833 0 10 0 chr11 52880314 52880411 -68963445 + (GA)n Simple_repeat Simple_repeat 1 98 0 6 988 364 309 65 24 chr11 52880953 52881122 -68962734 - MIRb SINE MIR -70 198 23 6 988 205 306 0 150 chr11 52882890 52882990 -68960866 + MIRb SINE MIR 161 249 -19 6 988 213 175 0 0 chr11 52883018 52883058 -68960798 + (CAT)n Simple_repeat Simple_repeat 1 40 0 6 988 191 225 25 0 chr11 52883087 52883127 -68960729 - MIR SINE MIR -92 170 130 6 988 22 0 0 0 chr11 52883605 52883627 -68960229 + AT_rich Low_complexity Low_complexity 1 22 0 6 988 1194 233 57 92 chr11 52884143 52884512 -68959344 + ORR1E LTR MaLR 4 359 0 6 988 1164 222 151 72 chr11 52884626 52884971 -68958885 - MTEa LTR MaLR -7 372 1 6 988 887 82 55 0 chr11 52885058 52885204 -68958652 + L1_Mus3 LINE L1 6481 6634 -4 6 988 314 207 17 0 chr11 52885284 52885342 -68958514 + MIR3 SINE MIR 104 162 -46 6 988 449 326 56 0 chr11 52886357 52886501 -68957355 - RMER15 LTR ERVL -2 573 422 6 988 274 267 70 84 chr11 52886568 52886711 -68957145 - RMER15 LTR ERVL -390 185 45 6 988 2976 135 27 0 chr11 52887012 52887487 -68956369 - RLTR28 LTR ERVL -36 488 1 6 988 180 219 0 0 chr11 52888857 52888898 -68954958 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 988 1351 232 22 12 chr11 52889155 52889474 -68954382 + MTE2b LTR MaLR 32 353 -26 6 988 514 173 37 37 chr11 52890310 52890418 -68953438 + PB1D9 SINE Alu 3 110 -10 6 988 423 38 0 0 chr11 52890760 52890813 -68953043 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 988 1184 230 11 28 chr11 52890823 52891105 -68952751 - B4 SINE B4 -15 277 1 6 988 262 328 47 39 chr11 52892295 52892422 -68951434 - MIR SINE MIR -122 140 13 6 988 197 132 26 0 chr11 52892590 52892628 -68951228 + CT-rich Low_complexity Low_complexity 2 40 0 6 988 674 302 95 33 chr11 52893559 52893895 -68949961 + ORR1E LTR MaLR 3 359 0 7 988 513 0 0 0 chr11 52893952 52894009 -68949847 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 7 988 2366 182 85 14 chr11 52897219 52897271 -68946585 - MT2A LTR ERVL -2 531 465 7 988 351 0 0 0 chr11 52897271 52897310 -68946546 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 988 2366 182 85 14 chr11 52897310 52897753 -68946103 - MT2A LTR ERVL -69 464 1 7 988 586 316 44 50 chr11 52899043 52899363 -68944493 + ORR1E LTR MaLR 42 359 0 7 988 497 280 49 3 chr11 52899718 52899925 -68943931 - MIR SINE MIR -48 220 3 7 988 338 252 83 7 chr11 52900388 52900524 -68943332 - MIR SINE MIR -57 211 62 7 988 735 283 11 53 chr11 52900908 52901098 -68942758 + B3A SINE B2 2 183 -15 7 988 215 61 0 29 chr11 52901101 52901135 -68942721 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 988 1157 61 0 0 chr11 52901640 52901787 -68942069 + B1_Mus2 SINE Alu 1 147 0 7 988 261 0 0 0 chr11 52901787 52901816 -68942040 + (A)n Simple_repeat Simple_repeat 1 29 0 7 988 186 345 11 45 chr11 52901967 52902055 -68941801 - L2 LINE L2 -1091 2328 2244 7 988 1593 131 229 10 chr11 52903256 52903557 -68940299 - ORR1B2 LTR MaLR 0 367 1 7 988 830 278 140 35 chr11 52903889 52904232 -68939624 + MTEa LTR MaLR 1 379 0 7 988 425 19 0 18 chr11 52904897 52904952 -68938904 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 988 23 0 0 0 chr11 52905193 52905216 -68938640 + AT_rich Low_complexity Low_complexity 1 23 0 7 988 460 308 110 102 chr11 52905406 52905760 -68938096 - ORR1E LTR MaLR -2 357 1 7 988 295 250 143 9 chr11 52906961 52907066 -68936790 - MIRb SINE MIR -31 237 119 7 988 311 272 3 21 chr11 52908319 52908436 -68935420 - MIR SINE MIR -63 205 91 7 988 960 275 92 19 chr11 52908437 52908780 -68935076 + Lx6 LINE L1 7063 7390 -70 7 988 726 270 70 104 chr11 52910087 52910329 -68933527 + B4 SINE B4 4 249 -43 7 988 1587 218 33 22 chr11 52910329 52910691 -68933165 - ORR1D2 LTR MaLR 0 370 5 7 988 726 270 70 104 chr11 52910691 52910746 -68933110 + B4 SINE B4 250 291 -1 7 988 423 56 0 0 chr11 52911482 52911536 -68932320 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 988 225 0 0 0 chr11 52912870 52912895 -68930961 + (A)n Simple_repeat Simple_repeat 1 25 0 7 988 588 321 126 27 chr11 52914509 52914874 -68928982 - MLT1C LTR MaLR 0 467 67 7 988 286 203 0 17 chr11 52915243 52915303 -68928553 + ID_B1 SINE B4 124 182 -42 7 988 1471 212 144 15 chr11 52915317 52915656 -68928200 + MTD LTR MaLR 23 405 -14 7 988 427 253 70 23 chr11 52916254 52916387 -68927469 + B1F SINE Alu 3 144 -5 7 988 406 280 50 65 chr11 52917031 52917317 -68926539 - L1ME2 LINE L1 -127 6046 5774 7 988 218 307 0 54 chr11 52917797 52917890 -68925966 + CT-rich Low_complexity Low_complexity 1 88 0 7 988 212 167 48 0 chr11 52918328 52918370 -68925486 + MIR SINE MIR 106 149 -113 7 988 625 268 50 60 chr11 52918386 52918604 -68925252 + ID_B1 SINE B4 1 216 -8 7 988 804 237 47 62 chr11 52918613 52918824 -68925032 + B3A SINE B2 3 210 -6 7 988 692 262 13 112 chr11 52918957 52919189 -68924667 - B3 SINE B2 -6 210 2 7 988 378 312 75 32 chr11 52920640 52920922 -68922934 + MER33 DNA MER1_type 33 323 -1 7 988 634 239 142 11 chr11 52920967 52921157 -68922699 + ID_B1 SINE B4 1 215 -9 7 988 300 306 30 10 chr11 52922152 52922251 -68921605 + PB1D10 SINE Alu 16 116 -1 7 988 836 274 36 40 chr11 52922268 52922545 -68921311 + B4A SINE B4 17 292 0 7 988 350 147 15 0 chr11 52922558 52922626 -68921230 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 988 584 268 12 89 chr11 52922630 52922798 -68921058 + B3A SINE B2 44 198 0 7 988 261 136 45 0 chr11 52924067 52924133 -68919723 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 988 361 285 86 14 chr11 52924344 52924483 -68919373 - ORR1E LTR MaLR -210 149 1 7 988 225 0 0 0 chr11 52925705 52925730 -68918126 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 7 988 731 133 42 0 chr11 52925730 52925895 -68917961 + CT-rich Low_complexity Low_complexity 1 172 0 7 988 318 337 108 22 chr11 52925900 52926085 -68917771 - HAL1-3A_ME LINE L1 -421 2437 2237 7 988 511 253 80 7 chr11 52926098 52926249 -68917607 + B4 SINE B4 3 164 -128 7 988 345 100 0 0 chr11 52932491 52932541 -68911315 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 988 472 335 27 50 chr11 52932849 52933069 -68910787 - MER20 DNA MER1_type -2 217 3 7 988 488 214 20 0 chr11 52934243 52934341 -68909515 + B4 SINE B4 1 100 -192 7 988 1471 33 49 0 chr11 52934377 52934561 -68909295 + B2_Mm1t SINE B2 1 193 0 7 988 270 264 102 58 chr11 52934561 52934698 -68909158 + B1F2 SINE Alu 1 143 -6 7 988 381 22 0 0 chr11 52934722 52934768 -68909088 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 988 674 316 63 42 chr11 52935596 52935880 -68907976 + B4A SINE B4 3 292 0 7 988 290 215 60 48 chr11 52936129 52936212 -68907644 + ID_B1 SINE B4 140 223 -1 7 988 269 295 39 170 chr11 52936764 52936993 -68906863 - MLT2B4 LTR ERVL -3 553 355 7 988 1038 288 113 12 chr11 52937004 52937341 -68906515 - MTE2b LTR MaLR -6 373 3 7 988 730 249 46 0 chr11 52937374 52937571 -68906285 - MLT2B4 LTR ERVL -350 206 1 7 988 220 312 12 48 chr11 52937876 52937960 -68905896 - ID4_ SINE ID -1 82 2 7 988 301 333 77 0 chr11 52938550 52938667 -68905189 + L2b LINE L2 3244 3369 -6 7 988 627 51 0 0 chr11 52939243 52939322 -68904534 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 988 665 267 94 38 chr11 52939671 52939936 -68903920 + B4 SINE B4 2 281 -11 7 988 243 0 0 0 chr11 52940513 52940540 -68903316 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 988 405 0 0 0 chr11 52940540 52940584 -68903272 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 988 370 217 120 0 chr11 52940585 52940677 -68903179 - B3A SINE B2 -94 104 2 7 988 1326 207 76 36 chr11 52940836 52941192 -68902664 + ORR1D2 LTR MaLR 1 370 0 7 988 185 138 0 0 chr11 52941532 52941561 -68902295 - MIRm SINE MIR -27 249 221 7 988 479 17 17 0 chr11 52941910 52941970 -68901886 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 988 705 251 96 60 chr11 52942142 52942392 -68901464 - ORR1E LTR MaLR -7 352 94 7 988 1026 269 36 111 chr11 52942668 52942774 -68901082 + MTEb LTR MaLR 2 108 -271 7 988 1290 224 103 18 chr11 52942774 52943115 -68900741 - ORR1D2 LTR MaLR 0 370 1 7 988 1026 262 35 124 chr11 52943115 52943365 -68900491 + MTEb LTR MaLR 109 332 -47 7 988 1975 105 17 90 chr11 52943365 52943720 -68900136 - ORR1A4 LTR MaLR 0 329 1 7 988 1113 259 35 124 chr11 52943720 52943770 -68900086 + MTEb LTR MaLR 333 377 -2 7 988 623 154 49 0 chr11 52945429 52945678 -68898178 + (TCTG)n Simple_repeat Simple_repeat 1 261 0 7 988 574 201 21 4 chr11 52945683 52945923 -68897933 + CT-rich Low_complexity Low_complexity 1 244 0 7 988 360 0 0 0 chr11 52946929 52946969 -68896887 + (CATA)n Simple_repeat Simple_repeat 2 41 0 7 988 199 363 53 32 chr11 52947021 52947115 -68896741 - L3b LINE CR1 -12 470 375 7 988 370 146 45 34 chr11 52948422 52948599 -68895257 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 988 198 0 0 0 chr11 52949669 52949691 -68894165 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 988 429 322 78 52 chr11 52950163 52950356 -68893500 + MIRb SINE MIR 26 223 -45 7 988 225 224 0 17 chr11 52950370 52950429 -68893427 + (TTA)n Simple_repeat Simple_repeat 1 58 0 7 988 228 213 0 0 chr11 52952187 52952234 -68891622 + C-rich Low_complexity Low_complexity 3 49 0 7 988 1029 113 0 0 chr11 52952565 52952742 -68891114 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 989 378 0 0 0 chr11 52953601 52953643 -68890213 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 989 356 271 0 0 chr11 52953645 52953715 -68890141 - ID4 SINE ID -13 70 1 7 989 385 279 99 26 chr11 52953765 52953916 -68889940 + RSINE1 SINE B4 3 164 -1 7 989 557 262 93 102 chr11 52954741 52954966 -68888890 + ID_B1 SINE B4 2 224 0 7 989 342 331 23 30 chr11 52955428 52955559 -68888297 - B1_Mus2 SINE Alu -14 133 4 7 989 661 261 73 37 chr11 52955559 52955635 -68888221 - ID SINE ID -141 83 1 7 989 417 265 68 31 chr11 52956364 52956555 -68887301 - MER77 LTR ERVL -4 603 406 7 989 296 302 81 30 chr11 52956702 52956801 -68887055 - MER77 LTR ERVL -449 158 55 7 989 453 19 0 0 chr11 52957353 52957407 -68886449 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 989 326 203 109 0 chr11 52957407 52957471 -68886385 - RSINE1 SINE B4 -41 124 54 7 989 393 289 37 28 chr11 52957513 52957620 -68886236 - ID_B1 SINE B4 -67 157 50 7 989 1198 167 40 0 chr11 52957884 52958082 -68885774 - B3 SINE B2 -10 206 1 7 989 771 248 46 15 chr11 52959202 52959276 -68884580 + B4 SINE B4 7 86 -206 7 989 347 298 22 51 chr11 52959276 52959414 -68884442 + B1F2 SINE Alu 1 134 -15 7 989 189 275 24 135 chr11 52959644 52959770 -68884086 - L2b LINE L2 -52 3323 3212 7 989 465 285 109 0 chr11 52960233 52960398 -68883458 - MER2 DNA MER2_type -48 297 120 7 989 1263 48 0 0 chr11 52960739 52960886 -68882970 + B1_Mus2 SINE Alu 1 147 0 7 989 554 128 0 11 chr11 52960894 52960989 -68882867 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 7 989 387 0 0 0 chr11 52961128 52961171 -68882685 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 989 392 280 32 0 chr11 52961560 52961653 -68882203 - ID_B1 SINE B4 0 224 129 7 989 468 35 0 0 chr11 52961736 52961794 -68882062 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 989 441 314 57 0 chr11 52962008 52962148 -68881708 + MER58B DNA MER1_type 191 338 -3 8 989 208 138 0 0 chr11 52963991 52964020 -68879836 - L2b LINE L2 -16 3359 3331 8 989 1034 61 0 164 chr11 52964038 52964215 -68879641 + B1_Mus1 SINE Alu 1 148 0 8 989 193 273 30 15 chr11 52964227 52964294 -68879562 - MIRm SINE MIR -135 141 74 8 989 2269 128 0 12 chr11 52964606 52964937 -68878919 + ORR1A2 LTR MaLR 1 327 0 8 989 12291 113 22 68 chr11 52964937 52966994 -68876862 + ORR1A2-int LTR MaLR 1 1963 0 8 989 2522 75 19 0 chr11 52966994 52967315 -68876541 + ORR1A2 LTR MaLR 1 327 0 8 989 182 239 105 86 chr11 52967328 52967433 -68876423 + L3 LINE CR1 913 1019 -3470 8 989 242 267 103 19 chr11 52967652 52967759 -68876097 - MIR3 SINE MIR -1 207 92 8 989 1270 211 7 62 chr11 52968276 52968408 -68875448 - B4 SINE B4 -1 291 169 8 989 347 39 39 0 chr11 52968408 52968460 -68875396 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 8 989 1270 211 7 62 chr11 52968460 52968635 -68875221 - B4 SINE B4 -124 168 1 8 989 210 71 0 0 chr11 52969248 52969276 -68874580 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 989 338 0 24 0 chr11 52969696 52969738 -68874118 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 989 294 292 185 26 chr11 52969828 52970060 -68873796 - L2 LINE L2 -810 2609 2341 8 989 312 27 0 0 chr11 52970719 52970756 -68873100 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 8 989 290 250 44 0 chr11 52970757 52970825 -68873031 - L2 LINE L2 -2889 530 460 8 989 441 0 0 0 chr11 52971041 52971090 -68872766 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 989 324 317 93 65 chr11 52971888 52972178 -68871678 - L1MC LINE L1 -1482 4664 4367 8 989 659 238 65 80 chr11 52972268 52972469 -68871387 + B3A SINE B2 1 198 0 8 989 383 350 40 109 chr11 52972480 52972727 -68871129 + ORR1E LTR MaLR 9 238 -132 8 989 250 242 0 0 chr11 52973009 52973075 -68870781 - L1_Mur2 LINE L1 -1968 3909 3844 8 989 502 325 125 51 chr11 52973203 52973459 -68870397 - B4A SINE B4 -16 276 2 8 989 1579 169 71 47 chr11 52973524 52973889 -68869967 + ORR1D1 LTR MaLR 1 374 0 8 989 1418 79 21 5 chr11 52974721 52974911 -68868945 + B2_Mm2 SINE B2 3 195 0 8 989 327 49 0 0 chr11 52974911 52974952 -68868904 + (GGA)n Simple_repeat Simple_repeat 1 41 0 8 989 207 0 0 0 chr11 52975137 52975160 -68868696 + (A)n Simple_repeat Simple_repeat 1 23 0 8 989 823 203 40 115 chr11 52977049 52977249 -68866607 - B3A SINE B2 -10 185 1 8 989 480 35 0 0 chr11 52979441 52979499 -68864357 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 989 292 250 39 26 chr11 52980866 52980942 -68862914 + B4 SINE B4 19 95 -197 8 989 738 189 31 17 chr11 52980942 52981104 -68862752 + B3 SINE B2 3 179 -14 8 989 593 254 17 0 chr11 52981115 52981233 -68862623 + B4 SINE B4 100 219 -73 8 989 318 297 89 9 chr11 52981325 52981437 -68862419 - L2 LINE L2 -1074 2345 2225 8 989 1202 75 0 0 chr11 52981912 52982059 -68861797 + B1_Mm SINE Alu 1 147 0 8 989 685 235 22 15 chr11 52982628 52982793 -68861063 - B3A SINE B2 -17 176 2 8 989 185 282 40 53 chr11 52982804 52982879 -68860977 - L2 LINE L2 -805 2614 2541 8 989 871 108 17 4 chr11 52982910 52983044 -68860812 + B2_Mm1t SINE B2 56 187 -6 8 989 496 238 132 18 chr11 52983042 52983209 -68860647 + MLT1D LTR MaLR 13 198 -307 8 989 558 325 112 19 chr11 52983299 52983619 -68860237 - L2 LINE L2 -973 2446 2097 8 989 858 282 214 30 chr11 52984286 52985079 -68858777 - L1MEg1 LINE L1 -3310 3927 2986 8 989 1037 251 111 82 chr11 52985079 52985447 -68858409 - MTE2a LTR MaLR 0 379 1 8 989 301 298 118 80 chr11 52985447 52985465 -68858391 - L1MEg1 LINE L1 -4348 2985 2970 8 989 24 67 0 0 chr11 52985493 52985538 -68858318 + AT_rich Low_complexity Low_complexity 1 45 0 8 989 460 179 60 0 chr11 52985607 52985691 -68858165 - PB1D7 SINE Alu -4 116 28 8 989 268 254 51 58 chr11 52985894 52986032 -68857824 - L1MEg1 LINE L1 -5002 2331 2195 8 989 353 291 180 33 chr11 52986307 52986613 -68857243 - L1MEg1 LINE L1 -5468 767 417 8 989 850 238 83 29 chr11 52986874 52987116 -68856740 - MTEa LTR MaLR -1 378 124 8 989 2335 144 8 3 chr11 52987816 52988178 -68855678 + MTC LTR MaLR 40 403 -18 8 989 697 257 28 45 chr11 52988367 52988546 -68855310 + B3A SINE B2 1 176 -22 8 989 1211 224 109 27 chr11 52990670 52991009 -68852847 + MTD LTR MaLR 50 404 -15 8 989 822 60 248 0 chr11 52991259 52991376 -68852480 + B1_Mm SINE Alu 1 146 -1 8 989 350 225 123 77 chr11 52991402 52991532 -68852324 - MLT1A1 LTR MaLR -2 406 271 8 989 182 171 0 28 chr11 52991894 52991930 -68851926 - MIRm SINE MIR -149 127 93 8 989 229 311 11 53 chr11 52992563 52992658 -68851198 - ORR1E LTR MaLR -168 191 101 8 989 409 324 19 9 chr11 52992753 52992859 -68850997 - ID_B1 SINE B4 -114 110 4 8 989 565 225 52 36 chr11 52992893 52993082 -68850774 + B3 SINE B2 1 193 0 8 989 357 244 60 0 chr11 52993183 52993289 -68850567 + B1F1 SINE Alu 2 115 -2 8 989 512 267 0 30 chr11 52993350 52993485 -68850371 + RSINE1 SINE B4 3 133 -32 8 989 295 135 77 0 chr11 52993586 52993638 -68850218 - B3 SINE B2 -86 130 75 8 989 785 283 22 22 chr11 52993635 52993791 -68850065 + ID_B1 SINE B4 39 194 -30 8 989 225 83 0 0 chr11 52993791 52993827 -68850029 + (CATA)n Simple_repeat Simple_repeat 3 38 0 8 989 785 283 22 22 chr11 52993827 52993854 -68850002 + ID_B1 SINE B4 195 221 -3 8 989 473 322 7 7 chr11 52993883 52994030 -68849826 + ID_B1 SINE B4 78 224 0 8 989 520 312 65 47 chr11 52994035 52994127 -68849729 + B4 SINE B4 1 95 -197 8 989 525 235 86 20 chr11 52994127 52994279 -68849577 + RSINE1 SINE B4 2 163 -2 8 989 520 312 65 47 chr11 52994279 52994401 -68849455 + B4 SINE B4 96 219 -73 8 989 1139 187 14 5 chr11 52994419 52994629 -68849227 + B3 SINE B2 2 213 -3 8 989 28 29 0 0 chr11 52994629 52994664 -68849192 + AT_rich Low_complexity Low_complexity 1 35 0 8 989 256 245 0 0 chr11 52994672 52994721 -68849135 + B4 SINE B4 240 288 -4 8 989 595 304 0 7 chr11 52995271 52995407 -68848449 + B3A SINE B2 5 139 -59 8 989 417 20 0 0 chr11 52995409 52995459 -68848397 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 989 368 242 20 50 chr11 52995510 52995610 -68848246 + PB1D10 SINE Alu 18 114 -3 8 989 1272 203 30 79 chr11 52997343 52997648 -68846208 + B4 SINE B4 3 292 0 8 989 216 97 0 0 chr11 52998084 52998115 -68845741 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 989 225 88 17 50 chr11 53000513 53000573 -68843283 + A-rich Low_complexity Low_complexity 6 63 0 1 989 25 0 0 0 chr11 53001090 53001115 -68842741 + AT_rich Low_complexity Low_complexity 1 25 0 2 989 231 36 0 0 chr11 53002315 53002343 -68841513 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 989 531 102 0 0 chr11 53002484 53002572 -68841284 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 989 27 29 0 0 chr11 53005703 53005737 -68838119 + AT_rich Low_complexity Low_complexity 1 34 0 5 989 236 326 0 52 chr11 53006056 53006153 -68837703 - MLT1A0 LTR MaLR -261 104 13 6 989 300 200 0 0 chr11 53006360 53006445 -68837411 + (TG)n Simple_repeat Simple_repeat 1 85 0 7 989 766 247 16 27 chr11 53006445 53006628 -68837228 - B3A SINE B2 -16 182 2 8 989 22 56 0 0 chr11 53006631 53006667 -68837189 + AT_rich Low_complexity Low_complexity 1 36 0 9 989 311 319 11 21 chr11 53006816 53006909 -68836947 - RMER15 LTR ERVL -113 462 371 1 989 307 326 0 0 chr11 53006909 53006995 -68836861 - Lx8 LINE L1 -240 7233 7148 1 989 3779 157 40 11 chr11 53007645 53008202 -68835654 - Lx5 LINE L1 -1096 5954 5367 1 989 1408 75 21 0 chr11 53008202 53008389 -68835467 + B2_Mm1a SINE B2 1 191 -2 1 989 3779 178 57 17 chr11 53008389 53008616 -68835240 - Lx5 LINE L1 -514 5366 5127 1 989 2207 254 52 4 chr11 53008616 53009118 -68834738 + Lx5 LINE L1 6507 7032 -18 1 989 3130 117 75 42 chr11 53009355 53009367 -68834489 - LTRIS2 LTR ERV1 0 564 557 1 989 2692 75 143 141 chr11 53009367 53009878 -68833978 - RLTR1B LTR ERV1 0 512 1 1 989 3130 117 75 42 chr11 53009878 53010411 -68833445 - LTRIS2 LTR ERV1 -8 556 1 1 989 1499 215 39 81 chr11 53011351 53011816 -68832040 - MT2B LTR ERVL 0 601 1 1 989 306 228 0 0 chr11 53011953 53012010 -68831846 - PB1D9 SINE Alu -1 119 63 1 989 673 145 30 81 chr11 53011993 53012139 -68831717 + B1_Mur1 SINE Alu 5 149 0 1 989 251 269 15 0 chr11 53012770 53012837 -68831019 + L1MD2 LINE L1 6274 6341 -18 2 989 1025 276 53 18 chr11 53012852 53013250 -68830606 + L1M5 LINE L1 3522 3933 -2213 2 989 1107 72 0 0 chr11 53013408 53013546 -68830310 + B1_Mm SINE Alu 1 138 -9 2 989 564 89 0 0 chr11 53013807 53013886 -68829970 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 2 989 793 254 14 5 chr11 53013904 53014118 -68829738 + L1_Mur3 LINE L1 2150 2365 -3515 2 989 282 125 11 0 chr11 53014119 53014169 -68829687 + B2_Mm2 SINE B2 1 53 -140 2 989 180 0 0 0 chr11 53015453 53015473 -68828383 + (A)n Simple_repeat Simple_repeat 1 20 0 2 989 1243 66 12 6 chr11 53015473 53015641 -68828215 + B2_Mm2 SINE B2 27 195 0 2 989 425 277 0 7 chr11 53015653 53015791 -68828065 + L1_Mur3 LINE L1 2352 2488 -3392 2 989 4275 138 178 28 chr11 53015791 53015856 -68828000 - RLTR25B LTR ERVK 0 1028 965 2 989 192 77 0 0 chr11 53015856 53015882 -68827974 + (TAG)n Simple_repeat Simple_repeat 1 26 0 2 989 4275 138 178 28 chr11 53015882 53016710 -68827146 - RLTR25B LTR ERVK -64 964 3 2 989 1532 253 34 22 chr11 53016710 53017154 -68826702 + L1_Mur3 LINE L1 2483 2931 -2949 2 989 622 217 0 0 chr11 53017182 53017297 -68826559 + B1_Mur1 SINE Alu 10 124 -25 2 989 671 287 19 31 chr11 53017315 53017477 -68826379 + RSINE1 SINE B4 4 163 -2 3 989 790 237 126 30 chr11 53017482 53017591 -68826265 + L1_Mur3 LINE L1 2998 3101 -2779 2 989 1431 88 16 0 chr11 53017591 53017783 -68826073 + B2_Mm2 SINE B2 1 195 0 3 989 790 237 126 30 chr11 53017783 53018038 -68825818 + L1_Mur3 LINE L1 3102 3396 -2484 2 989 368 293 75 8 chr11 53018067 53018201 -68825655 + L1M5 LINE L1 2537 2679 -3467 3 989 843 134 63 0 chr11 53018244 53018371 -68825485 + B1_Mus1 SINE Alu 6 140 -8 3 989 869 90 8 0 chr11 53018372 53018505 -68825351 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 3 989 637 227 254 6 chr11 53018545 53018718 -68825138 - B3 SINE B2 0 216 1 3 989 476 326 43 16 chr11 53018721 53018908 -68824948 + L1M5 LINE L1 2740 2931 -3215 3 989 655 285 129 88 chr11 53018933 53019300 -68824556 - ORR1E LTR MaLR -7 360 1 3 989 44 63 0 0 chr11 53019323 53019402 -68824454 + AT_rich Low_complexity Low_complexity 1 79 0 3 989 368 183 34 68 chr11 53019564 53019652 -68824204 + MTE2b LTR MaLR 279 363 -16 3 989 918 258 145 89 chr11 53019802 53020199 -68823657 - MTD LTR MaLR -14 405 1 3 989 793 250 67 29 chr11 53020318 53020528 -68823328 + ID_B1 SINE B4 2 219 -5 4 989 932 321 119 89 chr11 53020550 53021329 -68822527 + L1M5 LINE L1 3015 3817 -2329 3 989 378 335 31 21 chr11 53021450 53021642 -68822214 + L1M5 LINE L1 3789 3982 -2164 3 989 851 284 27 8 chr11 53021643 53021854 -68822002 + B3A SINE B2 1 211 -5 4 989 907 150 13 39 chr11 53021939 53022092 -68821764 + B1_Mur3 SINE Alu 1 149 0 4 989 2189 120 9 0 chr11 53022146 53022462 -68821394 - ORR1A2 LTR MaLR -8 319 1 4 989 479 275 32 78 chr11 53022467 53022621 -68821235 + Lx6 LINE L1 7288 7434 -26 4 989 26 30 0 0 chr11 53022621 53022654 -68821202 + AT_rich Low_complexity Low_complexity 1 33 0 4 989 321 279 40 24 chr11 53022754 53022879 -68820977 + YREP_Mm Unknown Unknown 167 293 -1519 4 989 659 246 8 0 chr11 53022769 53022903 -68820953 - ID_B1 SINE B4 -9 215 81 4 989 961 169 146 0 chr11 53023217 53023395 -68820461 - MTD LTR MaLR 0 419 216 4 989 466 117 146 21 chr11 53023392 53023478 -68820378 + B1_Mus1 SINE Alu 40 138 -10 4 989 240 35 0 0 chr11 53023478 53023507 -68820349 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 989 511 226 29 0 chr11 53023521 53023623 -68820233 + PB1D9 SINE Alu 2 106 -14 5 989 831 179 0 0 chr11 53023624 53023803 -68820053 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 5 989 204 86 57 0 chr11 53023814 53023849 -68820007 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 5 989 909 146 211 0 chr11 53023946 53024131 -68819725 + URR1B DNA MER1_type 2 225 0 5 989 368 301 54 24 chr11 53023987 53024154 -68819702 - CYRA11_Mm Unknown Y-chromosome -296 321 150 5 989 215 129 0 0 chr11 53024209 53024240 -68819616 + B1F2 SINE Alu 11 41 -108 5 989 336 333 25 12 chr11 53024549 53024710 -68819146 + L1M5 LINE L1 5543 5705 -535 3 989 281 200 23 127 chr11 53024710 53024843 -68819013 + B3A SINE B2 1 182 -16 5 989 576 62 0 0 chr11 53024852 53024933 -68818923 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 989 920 112 0 32 chr11 53024954 53025106 -68818750 + B1_Mur4 SINE Alu 5 149 -1 5 989 180 0 0 0 chr11 53025106 53025126 -68818730 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 989 2098 184 32 32 chr11 53025132 53025464 -68818392 - MTD LTR MaLR -8 411 81 6 989 3203 37 44 3 chr11 53025464 53025848 -68818008 - MTB LTR MaLR 0 400 1 6 989 2098 184 32 32 chr11 53025848 53025925 -68817931 - MTD LTR MaLR -339 80 3 6 989 672 252 15 7 chr11 53025927 53026063 -68817793 + RSINE1 SINE B4 23 159 -6 6 989 715 275 11 34 chr11 53026419 53026596 -68817260 - B3A SINE B2 -9 189 17 6 989 242 242 92 31 chr11 53026844 53026942 -68816914 + L1M2 LINE L1 4165 4268 -1875 6 989 261 276 139 0 chr11 53026949 53027050 -68816806 + B1_Mur2 SINE Alu 1 119 -1 6 989 404 287 0 25 chr11 53027083 53027201 -68816655 + L1MB3 LINE L1 4927 5041 -1105 6 989 935 129 13 20 chr11 53027226 53027376 -68816480 + B1_Mur4 SINE Alu 1 149 -1 6 989 426 120 0 0 chr11 53027393 53027468 -68816388 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 989 235 188 0 0 chr11 53027470 53027523 -68816333 - B2_Mm2 SINE B2 -145 53 1 6 989 484 301 99 22 chr11 53027529 53027607 -68816249 + L1MB3 LINE L1 5051 5140 -1000 6 989 215 0 67 0 chr11 53027607 53027637 -68816219 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 7 989 484 295 68 16 chr11 53027637 53027914 -68815942 + L1MB3 LINE L1 5141 5437 -731 6 989 527 217 16 40 chr11 53027914 53028039 -68815817 + RSINE1 SINE B4 8 129 -36 7 989 420 20 0 0 chr11 53028049 53028098 -68815758 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 989 308 231 13 13 chr11 53028195 53028274 -68815582 + L1MB3 LINE L1 5479 5557 -626 6 989 1347 218 43 49 chr11 53028296 53028430 -68815426 + MTD LTR MaLR 1 123 -296 7 989 513 0 0 0 chr11 53028430 53028487 -68815369 + (CTTTG)n Simple_repeat Simple_repeat 3 59 0 7 989 1347 218 43 49 chr11 53028487 53028699 -68815157 + MTD LTR MaLR 124 345 -74 7 989 293 29 0 0 chr11 53028699 53028733 -68815123 - L1_Mus1 LINE L1 -338 6228 6195 7 989 2543 46 6 30 chr11 53028733 53029066 -68814790 + L1_Mus1 LINE L1 6243 6567 0 7 989 370 173 48 36 chr11 53029091 53029175 -68814681 + MTD LTR MaLR 332 416 -3 7 989 793 228 18 12 chr11 53029175 53029338 -68814518 + B3A SINE B2 30 193 -5 7 989 771 307 90 19 chr11 53029438 53029903 -68813953 + L1MB3 LINE L1 5638 6135 -48 6 989 582 106 35 80 chr11 53029940 53030053 -68813803 - B1_Mur4 SINE Alu 0 150 43 7 989 313 215 18 18 chr11 53030097 53030183 -68813673 - B1_Mur4 SINE Alu -34 86 1 7 989 2630 176 7 162 chr11 53030558 53031255 -68812601 - RMER19C LTR ERVK -22 589 1 7 989 507 242 17 75 chr11 53031541 53031715 -68812141 + RSINE1 SINE B4 2 165 0 8 989 484 237 159 6 chr11 53031865 53032035 -68811821 + B3A SINE B2 3 198 0 8 989 216 273 0 0 chr11 53032495 53032583 -68811273 + GA-rich Low_complexity Low_complexity 2 89 0 8 989 218 290 136 0 chr11 53032999 53033098 -68810758 + MIR SINE MIR 148 259 -9 8 989 273 274 63 55 chr11 53033140 53033425 -68810431 + L1M4 LINE L1 5103 5394 -752 8 989 389 200 0 0 chr11 53033485 53033550 -68810306 + PB1D10 SINE Alu 27 91 -26 8 989 1771 144 10 36 chr11 53033550 53033859 -68809997 - MTC LTR MaLR 0 421 121 8 989 273 281 61 110 chr11 53033771 53033935 -68809921 + B3A SINE B2 38 193 -5 8 989 271 333 160 0 chr11 53034092 53034248 -68809608 - MER104 DNA Tc2 0 181 1 8 989 779 163 0 37 chr11 53034695 53034829 -68809027 + B1_Mur1 SINE Alu 21 149 0 8 989 470 83 0 0 chr11 53035009 53035069 -68808787 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 989 873 170 0 0 chr11 53035069 53035234 -68808622 + GA-rich Low_complexity Low_complexity 2 166 0 9 989 198 103 0 0 chr11 53035234 53035263 -68808593 + (CAGG)n Simple_repeat Simple_repeat 1 29 0 9 989 388 237 17 50 chr11 53035296 53035416 -68808440 + PB1D10 SINE Alu 2 117 0 9 989 619 276 36 128 chr11 53035433 53035628 -68808228 + B3 SINE B2 15 191 -4 9 989 1307 91 43 0 chr11 53035632 53035818 -68808038 + B2_Mm2 SINE B2 1 194 -1 9 989 446 108 0 13 chr11 53035818 53035893 -68807963 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 9 989 180 0 0 0 chr11 53036037 53036057 -68807799 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 989 315 276 0 0 chr11 53036874 53036932 -68806924 + ID4_ SINE ID 16 73 -10 9 989 614 47 24 0 chr11 53036936 53037021 -68806835 + (GGGA)n Simple_repeat Simple_repeat 1 87 0 9 989 847 203 7 0 chr11 53037083 53037231 -68806625 + B1_Mur2 SINE Alu 1 149 0 1 989 1201 83 65 6 chr11 53038645 53038815 -68805041 + B2_Mm2 SINE B2 2 181 -14 1 989 312 142 0 56 chr11 53038862 53038930 -68804926 + B2_Mm2 SINE B2 47 109 -107 1 989 396 0 0 0 chr11 53038944 53038988 -68804868 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 989 663 115 36 7 chr11 53038993 53039133 -68804723 + GA-rich Low_complexity Low_complexity 3 146 0 1 989 1368 67 0 0 chr11 53039133 53039313 -68804543 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 1 989 568 244 17 9 chr11 53039335 53039451 -68804405 + ID_B1 SINE B4 95 211 -13 1 989 996 75 0 0 chr11 53039648 53039782 -68804074 + (CA)n Simple_repeat Simple_repeat 2 135 0 1 989 310 216 135 11 chr11 53039861 53039950 -68803906 + RMER10A LTR ERVL 318 417 -25 1 989 2575 140 34 0 chr11 53039966 53040373 -68803483 + MTC LTR MaLR 1 421 0 1 989 1329 226 112 9 chr11 53040684 53041014 -68802842 - MTEa LTR MaLR -12 367 4 1 989 212 59 29 0 chr11 53041075 53041109 -68802747 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 1 989 1285 40 0 0 chr11 53041606 53041754 -68802102 + B1_Mus1 SINE Alu 1 148 0 1 989 189 107 0 0 chr11 53041757 53041785 -68802071 + (A)n Simple_repeat Simple_repeat 1 28 0 1 989 513 0 0 0 chr11 53042458 53042515 -68801341 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 989 404 271 22 37 chr11 53042918 53042938 -68800918 - RMER15 LTR ERVL -12 563 543 1 989 1878 170 59 6 chr11 53042938 53043293 -68800563 + ORR1D1 LTR MaLR 1 374 0 1 989 404 271 22 37 chr11 53043293 53043406 -68800450 - RMER15 LTR ERVL -33 542 432 1 989 357 292 26 9 chr11 53043734 53043848 -68800008 - MIRb SINE MIR -105 163 48 1 989 276 281 149 1 chr11 53043888 53044005 -68799851 + B4A SINE B4 90 222 -70 1 989 961 224 14 28 chr11 53044011 53044222 -68799634 + B3 SINE B2 2 209 -7 1 989 275 49 0 24 chr11 53044230 53044272 -68799584 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 989 333 226 45 8 chr11 53044328 53044462 -68799394 + (CA)n Simple_repeat Simple_repeat 1 139 0 1 989 502 102 39 52 chr11 53044485 53044640 -68799216 + (CA)n Simple_repeat Simple_repeat 1 153 0 1 989 222 162 40 0 chr11 53044747 53044821 -68799035 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 989 330 26 0 0 chr11 53044928 53044967 -68798889 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 989 196 239 0 61 chr11 53045085 53045134 -68798722 + MIR SINE MIR 217 262 0 1 989 478 146 56 0 chr11 53045742 53045831 -68798025 + ORR1B1 LTR MaLR 6 99 -295 1 989 310 232 177 9 chr11 53045874 53045976 -68797880 - Lx8 LINE L1 -9 7464 7344 1 989 855 196 0 20 chr11 53045976 53046127 -68797729 - B1_Mur1 SINE Alu 0 149 2 1 989 1148 75 7 0 chr11 53046448 53046594 -68797262 - B1_Mus1 SINE Alu -1 147 1 1 989 236 347 40 10 chr11 53046803 53046902 -68796954 - MER87 LTR ERV1 -40 501 400 1 989 898 211 103 0 chr11 53047807 53048001 -68795855 - B3 SINE B2 -2 214 1 1 989 655 343 68 22 chr11 53048083 53048487 -68795369 - L2a LINE L2 -255 3171 2744 1 989 904 147 0 0 chr11 53048666 53048802 -68795054 + B1_Mus1 SINE Alu 11 146 -2 1 989 4211 107 101 13 chr11 53049232 53049916 -68793940 + RMER6A LTR ERVK 1 744 -12 1 989 1573 207 30 36 chr11 53049929 53050265 -68793591 + ORR1E LTR MaLR 21 354 -5 1 989 704 42 0 40 chr11 53050407 53050506 -68793350 + B1_Mm SINE Alu 53 147 0 1 989 190 51 77 0 chr11 53050506 53050545 -68793311 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 989 2036 147 45 37 chr11 53050661 53050733 -68793123 + ORR1C1 LTR MaLR 1 73 -305 1 989 2432 126 50 60 chr11 53050733 53051213 -68792643 - IAPLTR2_Mm LTR ERVK 0 475 1 1 989 2036 147 45 37 chr11 53051213 53051515 -68792341 + ORR1C1 LTR MaLR 74 378 0 1 989 590 220 97 15 chr11 53052379 53052513 -68791343 - B1_Mur1 SINE Alu 0 149 5 1 989 21 36 0 0 chr11 53053095 53053123 -68790733 + AT_rich Low_complexity Low_complexity 1 28 0 1 989 244 289 11 43 chr11 53053124 53053218 -68790638 + ID_B1 SINE B4 80 170 -54 1 989 295 297 11 21 chr11 53053134 53053227 -68790629 + PB1D10 SINE Alu 6 97 -20 1 989 481 171 85 0 chr11 53053270 53053352 -68790504 + B1_Mus2 SINE Alu 50 138 -9 1 989 320 227 148 70 chr11 53053352 53053394 -68790462 + MT2B2 LTR ERVL 207 340 -244 1 989 282 297 80 9 chr11 53053447 53053559 -68790297 + RSINE1 SINE B4 38 157 -8 1 989 509 170 117 0 chr11 53054113 53054207 -68789649 - ID_B1 SINE B4 -4 220 116 1 989 797 187 0 0 chr11 53054336 53054470 -68789386 + B1_Mur4 SINE Alu 4 137 -13 1 989 227 335 43 18 chr11 53054837 53055001 -68788855 + (TCCA)n Simple_repeat Simple_repeat 4 171 0 1 989 1073 237 154 50 chr11 53055300 53055571 -68788285 - MTD LTR MaLR 0 419 119 1 989 1162 76 0 0 chr11 53055571 53055715 -68788141 + B1_Mus1 SINE Alu 1 144 -4 1 989 936 145 0 0 chr11 53055715 53055874 -68787982 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 1 989 1073 237 154 50 chr11 53055874 53055965 -68787891 - MTD LTR MaLR -301 118 19 1 989 823 197 0 7 chr11 53056251 53056399 -68787457 - B1_Mur4 SINE Alu -1 149 3 1 989 367 171 241 9 chr11 53056502 53056614 -68787242 + B1F SINE Alu 12 149 0 1 989 3000 144 46 11 chr11 53057099 53057640 -68786216 + RLTR20B2 LTR ERVK 1 560 0 1 989 2060 141 112 6 chr11 53057848 53058204 -68785652 - ORR1B1 LTR MaLR 0 394 1 1 989 191 309 42 11 chr11 53058375 53058470 -68785386 + L2c LINE L2 3281 3378 -9 1 989 402 288 11 121 chr11 53059337 53059519 -68784337 - B3A SINE B2 -1 197 36 1 989 252 0 0 0 chr11 53059520 53059548 -68784308 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 1 989 181 119 23 23 chr11 53059584 53059627 -68784229 + A-rich Low_complexity Low_complexity 2 44 0 1 989 2936 135 79 69 chr11 53059633 53060269 -68783587 + RLTR26 LTR ERVK 1 642 0 1 989 503 282 83 0 chr11 53060284 53060440 -68783416 + B3A SINE B2 2 170 -28 1 989 477 34 0 0 chr11 53060444 53060503 -68783353 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 989 1591 121 154 0 chr11 53060503 53060783 -68783073 + ORR1B1 LTR MaLR 72 394 0 1 989 198 143 0 0 chr11 53062019 53062054 -68781802 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 1 989 658 144 126 28 chr11 53062234 53062377 -68781479 - B3 SINE B2 0 216 60 1 989 338 173 0 13 chr11 53062430 53062506 -68781350 + CT-rich Low_complexity Low_complexity 6 80 0 1 989 396 0 0 0 chr11 53062512 53062556 -68781300 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 989 250 167 21 0 chr11 53062724 53062772 -68781084 - MIRc SINE MIR -142 126 78 1 989 641 230 29 7 chr11 53062794 53062934 -68780922 + B1F SINE Alu 2 144 -5 1 989 1622 16 26 5 chr11 53062957 53063146 -68780710 + B2_Mm1a SINE B2 1 193 0 1 989 208 221 0 0 chr11 53064175 53064234 -68779622 - MIR SINE MIR -94 174 112 1 989 366 167 42 0 chr11 53064932 53065004 -68778852 + PB1D10 SINE Alu 28 102 -15 1 989 386 242 30 19 chr11 53065020 53065159 -68778697 + B4 SINE B4 3 143 -149 1 989 1548 137 136 10 chr11 53065273 53065575 -68778281 - ORR1B1 LTR MaLR 0 394 55 1 989 568 272 12 47 chr11 53065628 53065798 -68778058 - B4 SINE B4 -123 169 6 1 989 723 239 50 32 chr11 53066610 53066830 -68777026 + ID_B1 SINE B4 1 224 0 1 989 218 229 0 20 chr11 53066840 53066889 -68776967 + ID SINE ID 12 59 -165 1 989 207 368 7 7 chr11 53067151 53067288 -68776568 + (TCTG)n Simple_repeat Simple_repeat 2 138 0 1 989 288 202 110 22 chr11 53067629 53067720 -68776136 - MTEb LTR MaLR -15 364 266 1 989 947 265 17 28 chr11 53067721 53068008 -68775848 - B4 SINE B4 -8 284 1 1 989 1139 165 39 10 chr11 53068042 53068250 -68775606 - B3 SINE B2 0 216 3 1 989 693 230 75 0 chr11 53068251 53068425 -68775431 - MTEb LTR MaLR -192 187 1 1 989 430 281 89 0 chr11 53068699 53068834 -68775022 + RSINE1 SINE B4 2 148 -17 1 989 615 333 36 0 chr11 53068888 53069083 -68774773 + MER44D DNA MER2_type 1 202 -503 1 989 381 338 14 14 chr11 53069211 53069355 -68774501 - ID_B1 SINE B4 0 224 81 1 989 337 311 114 0 chr11 53069353 53069485 -68774371 + MER44D DNA MER2_type 556 702 -3 1 989 649 272 142 13 chr11 53069824 53070132 -68773724 + MTEa LTR MaLR 1 348 -31 1 989 195 42 0 0 chr11 53070139 53070163 -68773693 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 989 706 253 95 6 chr11 53070362 53070541 -68773315 - B3A SINE B2 -3 195 1 1 989 296 256 24 71 chr11 53071792 53071918 -68771938 - ID_B1 SINE B4 -17 207 88 1 989 410 204 91 10 chr11 53071976 53072075 -68771781 - B1_Mus1 SINE Alu -2 146 40 1 989 246 267 33 0 chr11 53072172 53072232 -68771624 + ID4 SINE ID 11 72 -11 1 989 747 0 0 0 chr11 53072495 53072578 -68771278 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 989 263 271 57 86 chr11 53072727 53072832 -68771024 + MT2B LTR ERVL 139 240 -361 1 989 212 341 13 92 chr11 53072735 53072753 -68771103 + ID_B1 SINE B4 67 118 -106 1 989 448 236 37 9 chr11 53072753 53072860 -68770996 + B1_Mm SINE Alu 2 111 -36 1 989 212 341 13 92 chr11 53072860 53072887 -68770969 + ID_B1 SINE B4 119 206 -18 1 989 336 24 0 0 chr11 53073247 53073288 -68770568 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 989 968 98 20 40 chr11 53075451 53075600 -68768256 + B1_Mus2 SINE Alu 2 147 0 1 989 585 222 0 0 chr11 53075610 53075745 -68768111 + GA-rich Low_complexity Low_complexity 3 137 0 1 989 400 311 72 24 chr11 53076004 53076129 -68767727 + B3A SINE B2 1 131 -67 1 989 789 199 7 0 chr11 53076179 53076325 -68767531 + B1_Mur1 SINE Alu 3 149 0 1 989 369 0 0 0 chr11 53076950 53076991 -68766865 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 989 1193 77 77 0 chr11 53077155 53077323 -68766533 + B2_Mm2 SINE B2 1 181 -14 2 989 1222 55 0 0 chr11 53077345 53077490 -68766366 - B1_Mm SINE Alu 0 147 3 2 989 240 35 0 0 chr11 53077506 53077535 -68766321 + (A)n Simple_repeat Simple_repeat 1 29 0 2 989 27 0 0 0 chr11 53077721 53077748 -68766108 + AT_rich Low_complexity Low_complexity 1 27 0 2 989 722 182 0 33 chr11 53077757 53077910 -68765946 + B1_Mus1 SINE Alu 1 148 0 2 989 212 171 0 0 chr11 53078647 53078688 -68765168 + A-rich Low_complexity Low_complexity 1 41 0 2 989 344 296 35 122 chr11 53078755 53079067 -68764789 + B4A SINE B4 2 286 -6 2 989 315 253 202 22 chr11 53079151 53079329 -68764527 - B3 SINE B2 -3 213 4 2 989 1035 46 39 0 chr11 53079780 53079910 -68763946 + B1_Mus1 SINE Alu 2 136 -12 2 989 690 178 96 7 chr11 53080007 53080143 -68763713 + B1_Mur1 SINE Alu 2 149 0 2 989 702 159 27 7 chr11 53080297 53080443 -68763413 + URR1A DNA MER1_type 47 195 -31 2 989 1269 109 5 11 chr11 53080902 53081088 -68762768 + B2_Mm1t SINE B2 2 186 -7 2 989 556 271 15 22 chr11 53081105 53081241 -68762615 - RSINE1 SINE B4 -2 163 29 2 989 1005 69 14 0 chr11 53081580 53081724 -68762132 + B1_Mus2 SINE Alu 2 147 0 2 989 204 67 0 0 chr11 53081724 53081754 -68762102 + (A)n Simple_repeat Simple_repeat 1 30 0 2 989 968 99 37 0 chr11 53082505 53082677 -68761179 + B2_Mm1a SINE B2 1 194 -1 2 989 1137 75 0 7 chr11 53082696 53082844 -68761012 + B1_Mus1 SINE Alu 2 148 0 2 990 684 226 174 6 chr11 53084982 53085160 -68758696 + B3 SINE B2 6 213 -3 2 990 379 238 19 38 chr11 53085280 53085385 -68758471 - ID_B1 SINE B4 -42 182 80 2 990 534 186 39 103 chr11 53085908 53086064 -68757792 - B1_Mur4 SINE Alu 0 150 5 2 990 651 50 396 0 chr11 53086627 53086728 -68757128 + B1_Mus1 SINE Alu 2 142 -6 2 990 272 317 47 55 chr11 53087104 53087231 -68756625 + RSINE1 SINE B4 3 128 -37 2 990 316 316 50 10 chr11 53087262 53087361 -68756495 + PB1 SINE Alu 1 103 -24 2 990 183 42 0 0 chr11 53087694 53087718 -68756138 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 2 990 221 254 18 0 chr11 53087742 53087797 -68756059 - PB1D7 SINE Alu -38 82 27 2 990 349 188 312 0 chr11 53087795 53087891 -68755965 - ID_B1 SINE B4 -8 216 91 2 990 674 228 76 81 chr11 53087918 53088128 -68755728 - B3 SINE B2 -3 213 5 2 990 216 0 0 0 chr11 53088132 53088156 -68755700 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 990 496 199 259 6 chr11 53088160 53088322 -68755534 - B4A SINE B4 -82 210 8 2 990 570 269 85 52 chr11 53088766 53089037 -68754819 + L1MB7 LINE L1 5476 5755 -423 2 990 830 121 110 28 chr11 53089267 53089412 -68754444 + B2_Mm2 SINE B2 2 158 -37 2 990 536 27 27 0 chr11 53089413 53089486 -68754370 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2 990 200 213 0 0 chr11 53089697 53089744 -68754112 + T-rich Low_complexity Low_complexity 1 47 0 2 990 732 236 24 6 chr11 53089890 53090056 -68753800 - B3 SINE B2 0 216 48 2 990 555 182 0 0 chr11 53090090 53090211 -68753645 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 990 531 212 167 38 chr11 53090352 53090538 -68753318 + B3 SINE B2 1 210 -6 2 990 370 329 46 13 chr11 53090686 53090837 -68753019 + ID_B1 SINE B4 2 157 -67 2 990 540 142 176 40 chr11 53090885 53091010 -68752846 + B1_Mur4 SINE Alu 4 145 -5 2 990 261 240 133 9 chr11 53091030 53091135 -68752721 + B1F1 SINE Alu 24 141 -8 2 990 378 267 38 45 chr11 53091255 53091412 -68752444 + L1MB7 LINE L1 6011 6166 -18 2 990 261 0 0 0 chr11 53091418 53091447 -68752409 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 990 366 23 0 0 chr11 53092417 53092460 -68751396 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 990 369 75 0 0 chr11 53092460 53092513 -68751343 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 990 331 344 11 0 chr11 53092529 53092622 -68751234 - RSINE1 SINE B4 -68 97 4 2 990 646 123 0 66 chr11 53092750 53092872 -68750984 - B1_Mus2 SINE Alu 0 147 34 2 990 522 270 92 0 chr11 53092873 53093025 -68750831 + B3 SINE B2 41 206 -10 2 990 830 52 9 0 chr11 53093042 53093157 -68750699 + B1_Mus1 SINE Alu 33 148 0 2 990 195 129 0 0 chr11 53093265 53093296 -68750560 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 2 990 687 144 189 16 chr11 53094299 53094426 -68749430 - B1_Mur4 SINE Alu 0 150 2 2 990 554 207 63 14 chr11 53095064 53095206 -68748650 - B1_Mur3 SINE Alu 0 149 1 2 990 306 304 0 0 chr11 53095271 53095350 -68748506 + ID2 SINE ID 1 79 -4 2 990 1191 154 231 40 chr11 53095514 53095838 -68748018 + ORR1B1 LTR MaLR 1 386 -8 2 990 496 246 26 26 chr11 53095908 53096025 -68747831 - RSINE1 SINE B4 -46 119 3 2 990 263 303 66 0 chr11 53096045 53096121 -68747735 + MurSatRep1 Unknown Unknown 191 271 -1866 2 990 681 148 28 49 chr11 53097437 53097579 -68746277 - B1_Mur4 SINE Alu 0 150 12 2 990 1047 66 66 0 chr11 53097776 53097913 -68745943 + B1_Mus2 SINE Alu 2 147 0 2 990 974 147 116 35 chr11 53098601 53098799 -68745057 - URR1A DNA MER1_type -12 214 1 2 990 384 149 191 0 chr11 53099014 53099103 -68744753 + MTC LTR MaLR 1 107 -314 2 990 1118 65 19 0 chr11 53099103 53099258 -68744598 + B2_Mm2 SINE B2 1 158 -37 2 990 387 0 0 0 chr11 53099259 53099302 -68744554 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 990 1519 208 25 19 chr11 53099309 53099632 -68744224 + MTC LTR MaLR 97 421 0 2 990 424 269 7 21 chr11 53099924 53100068 -68743788 + B1F2 SINE Alu 1 142 -7 2 990 239 293 70 10 chr11 53100116 53100216 -68743640 + PB1D10 SINE Alu 3 108 -9 2 990 516 160 87 29 chr11 53101642 53101745 -68742111 + PB1D10 SINE Alu 2 110 -7 2 990 668 245 71 0 chr11 53102203 53102387 -68741469 + B3 SINE B2 2 198 -18 2 990 1128 82 0 20 chr11 53103685 53103835 -68740021 + B1_Mus1 SINE Alu 2 148 0 2 990 234 0 0 0 chr11 53103835 53103861 -68739995 + (A)n Simple_repeat Simple_repeat 1 26 0 2 990 617 215 159 46 chr11 53104334 53104427 -68739429 - ID_B1 SINE B4 -3 221 130 2 990 1928 156 103 57 chr11 53104427 53104598 -68739258 + MTB_Mm LTR MaLR 2 189 -218 2 990 774 26 259 0 chr11 53104598 53104714 -68739142 + B1_Mus2 SINE Alu 1 146 -1 2 990 1928 156 103 57 chr11 53104714 53104930 -68738926 + MTB_Mm LTR MaLR 190 407 0 2 990 617 215 159 46 chr11 53104930 53105031 -68738825 - ID_B1 SINE B4 -95 129 5 2 990 222 102 0 71 chr11 53105116 53105158 -68738698 - B4 SINE B4 -253 39 1 2 990 412 231 83 0 chr11 53105522 53105630 -68738226 + B1F SINE Alu 33 149 0 2 990 253 193 132 0 chr11 53105926 53106009 -68737847 - Lx9 LINE L1 -19 7625 7532 2 990 1212 100 56 0 chr11 53106024 53106204 -68737652 - B2_Mm2 SINE B2 -4 191 2 2 990 201 266 150 12 chr11 53106337 53106417 -68737439 + L3 LINE CR1 4304 4394 -95 2 990 927 52 69 56 chr11 53106565 53106709 -68737147 + B1_Mus1 SINE Alu 2 147 -1 2 990 770 255 25 20 chr11 53106749 53106949 -68736907 + B3 SINE B2 15 215 -1 2 990 517 76 0 0 chr11 53106993 53107072 -68736784 + L1Md_F2 LINE L1 6504 6582 0 2 990 189 0 0 0 chr11 53107202 53107223 -68736633 + (TTA)n Simple_repeat Simple_repeat 3 23 0 2 990 567 291 62 25 chr11 53107226 53107388 -68736468 - B3A SINE B2 -30 168 1 2 990 1093 58 50 0 chr11 53107473 53107612 -68736244 + B1_Mus2 SINE Alu 2 147 0 2 990 278 333 36 36 chr11 53108019 53108131 -68735725 + RSINE1 SINE B4 42 153 -12 2 990 1454 60 11 0 chr11 53109460 53109645 -68734211 + B2_Mm1t SINE B2 2 188 -5 2 990 319 278 49 49 chr11 53109724 53109826 -68734030 + PB1D10 SINE Alu 3 104 -13 2 990 315 269 94 53 chr11 53109918 53110108 -68733748 + ID_B1 SINE B4 13 199 -25 2 990 310 312 31 39 chr11 53110237 53110259 -68733597 - B4 SINE B4 -49 243 115 2 990 442 155 130 46 chr11 53110259 53110367 -68733489 - B1_Mus2 SINE Alu -1 146 30 2 990 935 114 63 0 chr11 53110372 53110530 -68733326 + B2_Mm1t SINE B2 26 193 0 2 990 258 226 168 47 chr11 53111301 53111408 -68732448 + PB1D7 SINE Alu 1 120 0 2 990 281 172 273 61 chr11 53111412 53111511 -68732345 + PB1D9 SINE Alu 1 120 0 2 990 1176 62 0 0 chr11 53111939 53112085 -68731771 + B1_Mus2 SINE Alu 2 147 0 2 990 607 253 96 17 chr11 53112236 53112413 -68731443 + ID_B1 SINE B4 14 204 -20 2 990 652 148 28 49 chr11 53112527 53112669 -68731187 - B1_Mur4 SINE Alu -6 144 6 2 990 211 254 73 15 chr11 53112687 53112755 -68731101 + ID_B1 SINE B4 99 170 -54 2 990 216 0 0 0 chr11 53112825 53112849 -68731007 + (T)n Simple_repeat Simple_repeat 1 24 0 2 990 286 233 67 27 chr11 53114856 53114931 -68728925 + ID4 SINE ID 3 80 -3 2 990 356 296 150 24 chr11 53115009 53115255 -68728601 + B4A SINE B4 4 280 -12 2 990 216 0 0 0 chr11 53115875 53115899 -68727957 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 990 1088 127 0 0 chr11 53115902 53116060 -68727796 - B2_Mm2 SINE B2 -37 158 1 2 990 1199 85 17 0 chr11 53116067 53116244 -68727612 - B2_Mm2 SINE B2 0 195 16 2 990 272 245 392 0 chr11 53116266 53116368 -68727488 - RSINE1 SINE B4 -21 144 3 2 990 309 250 29 108 chr11 53116673 53116759 -68727097 + ID_B1 SINE B4 81 157 -67 3 990 1439 88 5 0 chr11 53116759 53116951 -68726905 + B2_Mm1a SINE B2 1 193 0 3 990 309 250 29 108 chr11 53116951 53117003 -68726853 + ID_B1 SINE B4 158 208 -16 3 990 284 294 91 9 chr11 53117041 53117151 -68726705 + ID_B1 SINE B4 86 204 -20 3 990 1740 11 0 0 chr11 53117187 53117377 -68726479 + B2_Mm1a SINE B2 1 190 -3 3 990 285 98 0 0 chr11 53117486 53117527 -68726329 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 990 200 167 21 0 chr11 53117529 53117577 -68726279 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 990 1354 106 5 5 chr11 53117624 53117813 -68726043 + B2_Mm1a SINE B2 1 189 -4 3 990 1191 48 7 0 chr11 53117822 53117968 -68725888 + B1_Mus1 SINE Alu 2 148 0 3 990 434 163 32 19 chr11 53118000 53118099 -68725757 + PB1D9 SINE Alu 6 118 -2 3 990 230 256 0 0 chr11 53118363 53118406 -68725450 - ID_B1 SINE B4 -8 216 174 3 990 831 125 7 7 chr11 53118461 53118598 -68725258 - B1_Mus2 SINE Alu -2 145 9 3 990 974 173 94 20 chr11 53118649 53118850 -68725006 - B3 SINE B2 0 216 1 3 990 861 221 66 15 chr11 53118866 53119064 -68724792 - B3 SINE B2 -6 210 3 3 990 380 292 16 8 chr11 53119181 53119302 -68724554 + ID_B1 SINE B4 90 211 -13 3 990 1139 34 0 64 chr11 53119646 53119664 -68724192 - B1_Mus2 SINE Alu 0 147 136 3 990 372 22 0 0 chr11 53119664 53119709 -68724147 + (TTG)n Simple_repeat Simple_repeat 1 45 0 3 990 1139 34 0 64 chr11 53119709 53119847 -68724009 - B1_Mus2 SINE Alu -12 135 2 3 990 549 271 30 30 chr11 53119950 53120083 -68723773 + B1_Mur1 SINE Alu 10 142 -7 3 990 182 0 107 0 chr11 53120155 53120183 -68723673 + (TAAAAA)n Simple_repeat Simple_repeat 2 32 0 3 990 26 0 0 0 chr11 53120183 53120209 -68723647 + AT_rich Low_complexity Low_complexity 1 26 0 3 990 548 177 139 51 chr11 53120285 53120422 -68723434 + B1_Mur3 SINE Alu 1 149 0 3 990 216 86 0 0 chr11 53120814 53120849 -68723007 + (T)n Simple_repeat Simple_repeat 1 35 0 3 990 1199 55 0 0 chr11 53120849 53120994 -68722862 - B1_Mus2 SINE Alu 0 147 3 3 990 346 220 50 84 chr11 53121249 53121368 -68722488 + PB1D10 SINE Alu 1 115 -2 3 990 260 300 0 0 chr11 53121474 53121544 -68722312 + ID SINE ID 1 70 -154 3 990 195 42 0 0 chr11 53121647 53121671 -68722185 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 990 188 61 61 0 chr11 53122435 53122468 -68721388 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 990 494 270 0 9 chr11 53123009 53123121 -68720735 + ID_B1 SINE B4 79 189 -35 3 990 432 0 0 0 chr11 53123127 53123175 -68720681 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 990 972 92 158 0 chr11 53123175 53123327 -68720529 + B2_Mm1t SINE B2 4 179 -14 3 990 31 26 0 0 chr11 53123448 53123486 -68720370 + AT_rich Low_complexity Low_complexity 1 38 0 3 990 798 226 15 45 chr11 53123591 53123790 -68720066 + B3A SINE B2 2 194 -4 3 990 336 278 86 16 chr11 53123845 53123912 -68719944 + MTC LTR MaLR 32 107 -314 3 990 1681 26 5 0 chr11 53123912 53124104 -68719752 - B2_Mm1a SINE B2 0 193 1 3 990 336 278 86 16 chr11 53124104 53124164 -68719692 + MTC LTR MaLR 108 167 -254 3 990 488 265 11 142 chr11 53124328 53124504 -68719352 + RSINE1 SINE B4 13 165 0 3 990 320 284 12 12 chr11 53124703 53124785 -68719071 - PB1D9 SINE Alu -37 83 2 3 990 553 248 16 0 chr11 53124859 53124980 -68718876 - B1_Mur2 SINE Alu -26 123 1 3 990 423 214 191 0 chr11 53124980 53125092 -68718764 - MTC LTR MaLR -212 209 74 3 990 345 280 65 0 chr11 53125342 53125449 -68718407 - PB1D7 SINE Alu -5 115 2 3 990 766 133 9 14 chr11 53125471 53125611 -68718245 - B1_Mur4 SINE Alu -2 148 1 3 990 218 158 117 50 chr11 53125809 53125869 -68717987 - B1_Mur1 SINE Alu 0 149 86 3 990 772 179 12 0 chr11 53126530 53126637 -68717219 + polypyrimidine Low_complexity Low_complexity 65 172 0 3 990 1506 54 32 0 chr11 53126637 53126823 -68717033 - B2_Mm1t SINE B2 0 193 2 3 990 772 179 12 0 chr11 53126823 53126883 -68716973 + polypyrimidine Low_complexity Low_complexity 4 64 0 3 990 342 0 0 0 chr11 53126880 53126918 -68716938 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 990 381 314 51 0 chr11 53126918 53127036 -68716820 - ID_B1 SINE B4 -15 209 86 3 990 1462 84 16 0 chr11 53127052 53127242 -68716614 + B2_Mm2 SINE B2 1 193 -2 3 990 294 269 0 0 chr11 53127325 53127392 -68716464 + ID_B1 SINE B4 157 223 -1 3 990 246 250 147 0 chr11 53127408 53127476 -68716380 + PB1D7 SINE Alu 14 91 -29 3 990 846 9 0 0 chr11 53127480 53127588 -68716268 + L1Md_T LINE L1 6475 6582 0 3 990 892 250 24 0 chr11 53127742 53127950 -68715906 + B3 SINE B2 1 213 -3 3 990 546 271 0 7 chr11 53128029 53128174 -68715682 + B1_Mur2 SINE Alu 5 148 -1 3 990 377 220 54 21 chr11 53128182 53128275 -68715581 + B1F2 SINE Alu 10 105 -44 3 990 360 0 0 0 chr11 53128275 53128315 -68715541 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 990 545 195 55 81 chr11 53128338 53128563 -68715293 + MER92C LTR ERV1 88 385 -169 3 990 213 217 0 0 chr11 53128646 53128692 -68715164 - ID4_ SINE ID -21 62 17 3 990 984 92 166 0 chr11 53128854 53129017 -68714839 + B2_Mm1a SINE B2 1 190 -3 3 990 303 93 0 0 chr11 53129055 53129098 -68714758 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 3 990 657 224 151 0 chr11 53129100 53129279 -68714577 - B3 SINE B2 -8 208 3 3 990 604 172 164 0 chr11 53129319 53129441 -68714415 + B1_Mur1 SINE Alu 1 142 -7 3 990 530 260 0 16 chr11 53129936 53130061 -68713795 + B1_Mur2 SINE Alu 27 149 0 3 990 521 291 74 30 chr11 53130095 53130297 -68713559 + ID_B1 SINE B4 14 224 0 3 990 220 295 8 16 chr11 53130375 53130499 -68713357 + (TTTG)n Simple_repeat Simple_repeat 2 124 0 3 990 361 264 0 0 chr11 53130504 53130591 -68713265 - ID_B1 SINE B4 -1 223 137 3 990 549 197 8 8 chr11 53130803 53130921 -68712935 + PB1D9 SINE Alu 1 118 -2 3 990 286 257 151 53 chr11 53130921 53130949 -68712907 + B4A SINE B4 104 246 -46 3 990 42 58 0 11 chr11 53131062 53131078 -68712778 + AT_rich Low_complexity Low_complexity 1 16 0 3 990 1987 169 71 74 chr11 53131078 53131499 -68712357 - MTC LTR MaLR -1 420 1 3 990 42 58 0 11 chr11 53131499 53131570 -68712286 + AT_rich Low_complexity Low_complexity 1 71 0 3 990 563 272 33 20 chr11 53131590 53131740 -68712116 - RSINE1 SINE B4 -10 155 4 3 990 1146 35 14 0 chr11 53131844 53131988 -68711868 + B1_Mus2 SINE Alu 2 147 0 3 990 206 118 0 0 chr11 53131988 53132022 -68711834 + (A)n Simple_repeat Simple_repeat 1 34 0 3 990 1328 92 16 0 chr11 53132063 53132247 -68711609 - B2_Mm1t SINE B2 -5 188 2 3 990 326 104 0 43 chr11 53132271 53132341 -68711515 + (T)n Simple_repeat Simple_repeat 1 67 0 3 990 1143 68 7 0 chr11 53132341 53132487 -68711369 - B1_Mus1 SINE Alu 0 148 2 3 990 356 320 0 30 chr11 53132626 53132726 -68711130 - RSINE1 SINE B4 -61 104 8 3 990 647 189 60 15 chr11 53132851 53132985 -68710871 + B1_Mur4 SINE Alu 11 150 0 3 990 387 252 60 15 chr11 53132989 53133122 -68710734 + B4 SINE B4 81 219 -73 3 990 572 178 14 43 chr11 53133006 53133147 -68710709 + B1_Mur2 SINE Alu 13 150 0 3 990 337 250 117 0 chr11 53133260 53133380 -68710476 + B1F SINE Alu 1 134 -15 3 990 1397 198 46 23 chr11 53133381 53133732 -68710124 - RLTR10D LTR ERVK 0 359 1 3 990 810 97 89 0 chr11 53133967 53134091 -68709765 + B1_Mus2 SINE Alu 13 147 0 3 990 375 78 0 0 chr11 53134093 53134144 -68709712 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 3 990 457 303 54 14 chr11 53134546 53134693 -68709163 + RSINE1 SINE B4 13 165 0 3 990 610 219 23 15 chr11 53134736 53134866 -68708990 + B1_Mur2 SINE Alu 14 144 -5 3 990 1900 152 42 31 chr11 53134889 53135058 -68708798 - ORR1B1 LTR MaLR -4 390 218 3 990 1975 97 0 18 chr11 53135058 53135340 -68708516 - L1Md_F2 LINE L1 -12 6570 6294 3 990 1900 152 42 31 chr11 53135340 53135556 -68708300 - ORR1B1 LTR MaLR -177 217 1 3 990 254 205 10 170 chr11 53135579 53135592 -68708264 - ID SINE ID -140 84 74 3 990 234 0 0 0 chr11 53135592 53135618 -68708238 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 990 254 205 10 170 chr11 53135618 53135655 -68708201 - ID SINE ID -151 73 42 3 990 1902 160 120 88 chr11 53135655 53136087 -68707769 - RLTR41 LTR ERV1 0 446 1 3 990 2566 106 132 37 chr11 53136088 53136520 -68707336 + MT2C_Mm LTR ERVL 3 475 0 3 990 254 205 10 170 chr11 53136520 53136566 -68707290 - ID SINE ID -183 41 1 3 990 543 160 38 0 chr11 53136595 53136701 -68707155 + RMER1A Other Other 918 1027 -3 3 990 518 56 0 0 chr11 53136799 53136871 -68706985 - B1_Mus2 SINE Alu -5 142 71 3 990 378 303 0 0 chr11 53136852 53136961 -68706895 - ID_B1 SINE B4 -26 198 90 3 990 189 0 0 0 chr11 53137032 53137053 -68706803 + (A)n Simple_repeat Simple_repeat 1 21 0 3 990 598 91 0 0 chr11 53137056 53137144 -68706712 + B2_Mm2 SINE B2 1 88 -107 3 990 423 210 12 0 chr11 53137201 53137282 -68706574 - B1_Mus2 SINE Alu -63 84 3 3 990 321 225 17 106 chr11 53137282 53137363 -68706493 - MT2B LTR ERVL -382 219 155 3 990 368 42 0 0 chr11 53137360 53137408 -68706448 - RMER6D LTR ERVK -672 48 1 3 990 1166 54 0 20 chr11 53137409 53137560 -68706296 + B1_Mus1 SINE Alu 1 148 0 3 990 210 75 18 54 chr11 53137593 53137649 -68706207 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 990 446 211 195 0 chr11 53137703 53137826 -68706030 - B1_Mus1 SINE Alu 0 148 2 3 990 364 213 51 41 chr11 53137839 53137937 -68705919 - PB1D7 SINE Alu 0 120 22 4 990 857 137 64 7 chr11 53138719 53138859 -68704997 + B1_Mus1 SINE Alu 1 148 0 4 990 844 128 45 8 chr11 53139070 53139204 -68704652 - B1_Mus2 SINE Alu -8 139 1 4 990 528 237 7 21 chr11 53139227 53139369 -68704487 + B1_Mur1 SINE Alu 10 149 0 4 990 301 247 82 0 chr11 53139415 53139488 -68704368 + PB1 SINE Alu 43 121 -6 4 990 348 219 24 24 chr11 53139674 53139758 -68704098 + PB1D9 SINE Alu 2 85 -35 4 990 419 184 166 1 chr11 53139868 53139972 -68703884 + B1_Mur3 SINE Alu 1 120 0 4 990 240 270 93 13 chr11 53140122 53140197 -68703659 + ID4 SINE ID 2 82 -1 4 990 1654 27 0 0 chr11 53140281 53140467 -68703389 - B2_Mm1a SINE B2 -6 187 2 4 990 460 286 8 16 chr11 53140486 53140607 -68703249 - PB1D7 SINE Alu 0 120 1 4 990 382 243 38 0 chr11 53140969 53141059 -68702797 - B1F1 SINE Alu -56 93 1 4 990 337 262 47 12 chr11 53140983 53141068 -68702788 - ID_B1 SINE B4 -67 157 70 4 990 206 214 90 72 chr11 53141079 53141190 -68702666 - MIR SINE MIR -14 248 136 4 990 348 233 46 11 chr11 53141488 53141575 -68702281 + ID_B1 SINE B4 127 216 -8 4 990 481 185 64 18 chr11 53141588 53141698 -68702158 + PB1D9 SINE Alu 2 116 -4 4 990 708 287 106 58 chr11 53141708 53142285 -68701571 + Lx8 LINE L1 5096 5704 -1769 4 990 288 53 0 0 chr11 53142534 53142572 -68701284 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 990 534 275 38 0 chr11 53142717 53142848 -68701008 + B1_Mur1 SINE Alu 1 136 -13 4 990 439 201 400 6 chr11 53143178 53143338 -68700518 + ID_B1 SINE B4 2 224 0 4 990 1310 20 0 0 chr11 53143655 53143802 -68700054 + B1_Mus1 SINE Alu 2 148 0 4 990 183 42 0 0 chr11 53143802 53143826 -68700030 + (A)n Simple_repeat Simple_repeat 1 24 0 4 990 21 36 0 0 chr11 53144291 53144319 -68699537 + AT_rich Low_complexity Low_complexity 1 28 0 4 990 536 42 0 0 chr11 53144322 53144393 -68699463 + B1_Mur4 SINE Alu 74 144 -6 4 990 1199 94 58 0 chr11 53144393 53144564 -68699292 - B2_Mm2 SINE B2 -14 181 1 4 990 485 261 255 22 chr11 53144688 53144919 -68698937 + B4A SINE B4 2 286 -6 4 990 315 172 81 0 chr11 53144988 53145075 -68698781 - B1_Mur1 SINE Alu -7 142 49 4 990 614 267 9 84 chr11 53145100 53145313 -68698543 - B3A SINE B2 0 198 2 4 990 549 214 0 0 chr11 53145316 53145414 -68698442 - PB1D7 SINE Alu 0 120 23 4 990 405 0 0 0 chr11 53145421 53145466 -68698390 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 990 207 0 0 0 chr11 53145466 53145488 -68698368 + (CAGA)n Simple_repeat Simple_repeat 3 25 0 4 990 328 317 0 102 chr11 53145488 53145625 -68698231 - ID_B1 SINE B4 -38 186 64 4 990 384 130 0 0 chr11 53145929 53145998 -68697858 + (TCC)n Simple_repeat Simple_repeat 2 70 0 4 990 189 0 0 0 chr11 53146019 53146040 -68697816 + (CAG)n Simple_repeat Simple_repeat 1 21 0 4 990 508 231 111 7 chr11 53146306 53146441 -68697415 - B1_Mur1 SINE Alu 0 149 1 4 990 423 0 0 0 chr11 53146868 53146915 -68696941 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 990 543 256 32 43 chr11 53146920 53147108 -68696748 - B3 SINE B2 -30 186 1 4 990 383 223 30 50 chr11 53147540 53147639 -68696217 - ID_B1 SINE B4 -7 217 121 4 990 226 0 59 0 chr11 53147686 53147720 -68696136 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 990 471 244 73 8 chr11 53147727 53147851 -68696005 - B3A SINE B2 -48 150 19 4 990 216 0 0 0 chr11 53147875 53147899 -68695957 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 4 990 1037 66 73 0 chr11 53147920 53148057 -68695799 - B1_Mm SINE Alu 0 147 1 4 990 677 233 111 46 chr11 53148074 53148335 -68695521 + B4A SINE B4 2 279 -13 4 990 346 244 13 0 chr11 53148386 53148464 -68695392 - ID4 SINE ID 0 83 5 4 990 499 255 11 144 chr11 53148696 53148806 -68695050 + ID_B1 SINE B4 1 107 -117 4 990 597 177 26 0 chr11 53148806 53148919 -68694937 - PB1D7 SINE Alu 0 120 5 4 990 499 255 11 144 chr11 53148919 53148982 -68694874 + ID_B1 SINE B4 108 151 -73 4 990 351 187 147 73 chr11 53149029 53149179 -68694677 + RMER4B LTR ERVK 17 177 -408 4 990 243 220 22 11 chr11 53149299 53149391 -68694465 + C-rich Low_complexity Low_complexity 3 95 0 4 990 382 227 68 101 chr11 53149395 53149626 -68694230 + RMER4B LTR ERVK 389 586 -25 4 990 228 125 25 0 chr11 53149680 53149720 -68694136 - B1F SINE Alu -6 143 103 4 990 198 156 0 0 chr11 53149850 53149895 -68693961 + T-rich Low_complexity Low_complexity 1 45 0 4 990 443 227 0 0 chr11 53150092 53150167 -68693689 + B1_Mus2 SINE Alu 2 76 -71 4 990 357 317 81 91 chr11 53150212 53150324 -68693532 + B4A SINE B4 1 101 -191 4 990 592 24 36 0 chr11 53150324 53150408 -68693448 + L1Md_F3 LINE L1 6498 6584 0 4 990 357 317 81 91 chr11 53150408 53150580 -68693276 + B4A SINE B4 102 282 -10 4 990 447 256 169 25 chr11 53150583 53150743 -68693113 + ID_B1 SINE B4 8 190 -34 4 990 441 194 164 10 chr11 53150744 53150848 -68693008 + PB1D9 SINE Alu 1 120 0 4 990 261 0 0 0 chr11 53150851 53150880 -68692976 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 990 630 0 0 0 chr11 53150880 53150950 -68692906 + (GAA)n Simple_repeat Simple_repeat 3 72 0 4 990 306 246 71 71 chr11 53150963 53151147 -68692709 + L1M5 LINE L1 3181 3364 -2782 4 990 763 204 14 0 chr11 53151192 53151334 -68692522 - B1_Mus2 SINE Alu 0 147 4 4 990 242 29 0 28 chr11 53151606 53151642 -68692214 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 990 1251 38 0 0 chr11 53151642 53151802 -68692054 - B2_Mm1t SINE B2 -33 160 1 4 990 723 52 0 0 chr11 53152022 53152119 -68691737 - B1_Mus1 SINE Alu -50 98 2 4 990 283 198 43 8 chr11 53152027 53152144 -68691712 - ORR1B1-int LTR MaLR -770 739 619 4 990 220 271 0 0 chr11 53152186 53152276 -68691580 + (CACG)n Simple_repeat Simple_repeat 1 90 0 4 990 21 36 0 0 chr11 53152279 53152307 -68691549 + AT_rich Low_complexity Low_complexity 1 28 0 4 990 235 262 36 48 chr11 53152441 53152525 -68691331 + MLT1F LTR MaLR 18 100 -448 4 990 283 304 49 28 chr11 53152583 53152725 -68691131 + MLT1F LTR MaLR 226 370 -178 4 990 265 303 21 43 chr11 53152709 53152802 -68691054 + MLT1F LTR MaLR 538 628 -52 4 990 712 134 0 18 chr11 53152811 53152925 -68690931 - B1_Mus1 SINE Alu -1 147 36 4 990 248 180 20 0 chr11 53152947 53152997 -68690859 + MLT1F LTR MaLR 485 535 -13 4 990 207 0 0 0 chr11 53153184 53153207 -68690649 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 990 1037 226 0 10 chr11 53153533 53153739 -68690117 - B3 SINE B2 -11 205 2 4 990 712 150 8 30 chr11 53153784 53153915 -68689941 + B1_Mus2 SINE Alu 20 147 0 4 990 290 296 0 12 chr11 53153928 53154010 -68689846 + ID4 SINE ID 1 81 -2 4 990 402 271 123 0 chr11 53154127 53154249 -68689607 + MLT1F LTR MaLR 1 137 -411 4 990 594 226 38 0 chr11 53154355 53154488 -68689368 - B1F SINE Alu 0 149 12 4 990 207 88 0 0 chr11 53154503 53154537 -68689319 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 990 1182 49 0 0 chr11 53154538 53154681 -68689175 - B1_Mm SINE Alu 0 147 5 4 990 372 282 0 35 chr11 53154685 53154799 -68689057 + Cheshire DNA MER1_type 716 825 -1595 4 990 312 261 80 9 chr11 53154902 53155014 -68688842 + Cheshire DNA MER1_type 1482 1601 -819 4 990 213 302 90 34 chr11 53155115 53155204 -68688652 + PB1D10 SINE Alu 13 106 -11 4 990 393 111 14 27 chr11 53155296 53155370 -68688486 - B2_Mm2 SINE B2 -25 170 98 4 990 731 73 9 9 chr11 53155403 53155513 -68688343 - B2_Mm2 SINE B2 -84 111 2 4 990 216 265 0 0 chr11 53155645 53155694 -68688162 - B3 SINE B2 -137 79 31 4 990 1481 73 5 0 chr11 53155694 53155885 -68687971 - B2_Mm1t SINE B2 -1 192 1 4 990 455 261 88 44 chr11 53156684 53156844 -68687012 + ID_B1 SINE B4 16 182 -42 4 990 219 277 131 50 chr11 53156763 53156862 -68686994 + PB1D7 SINE Alu 12 118 -2 4 990 1420 74 16 21 chr11 53156869 53157062 -68686794 + B2_Mm2 SINE B2 3 194 -1 4 990 429 20 0 0 chr11 53157086 53157136 -68686720 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 990 309 316 195 13 chr11 53157177 53157408 -68686448 - B4A SINE B4 -18 274 2 4 990 198 0 0 0 chr11 53157449 53157471 -68686385 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 990 430 291 42 21 chr11 53157473 53157617 -68686239 - RSINE1 SINE B4 -15 150 4 4 990 243 324 0 115 chr11 53157650 53157772 -68686084 - PB1D9 SINE Alu -2 118 11 4 990 284 298 88 6 chr11 53157781 53157940 -68685916 + Cheshire DNA MER1_type 2130 2301 -119 4 990 365 317 65 27 chr11 53158172 53158357 -68685499 - B4A SINE B4 -100 192 1 4 990 319 308 40 94 chr11 53158322 53158381 -68685475 + ID_B1 SINE B4 35 224 0 4 990 420 345 7 0 chr11 53158381 53158523 -68685333 + B1F1 SINE Alu 7 149 0 4 990 210 119 48 0 chr11 53158562 53158604 -68685252 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 990 492 214 92 17 chr11 53158606 53158725 -68685131 + RSINE1 SINE B4 3 130 -35 4 990 658 91 33 8 chr11 53159675 53159797 -68684059 + (TTC)n Simple_repeat Simple_repeat 1 125 0 4 990 1185 95 0 16 chr11 53159798 53159980 -68683876 - B2_Mm2 SINE B2 -5 190 12 4 990 545 222 8 17 chr11 53160027 53160146 -68683710 - B1F2 SINE Alu -1 148 31 4 990 1139 75 0 20 chr11 53160196 53160346 -68683510 + B1_Mus1 SINE Alu 2 148 0 4 990 180 0 0 0 chr11 53160346 53160366 -68683490 + (A)n Simple_repeat Simple_repeat 1 20 0 4 990 222 91 0 0 chr11 53160559 53160592 -68683264 + (T)n Simple_repeat Simple_repeat 1 33 0 4 990 1089 93 0 0 chr11 53160606 53160746 -68683110 - B1_Mus1 SINE Alu -8 140 1 4 990 886 208 27 63 chr11 53160756 53160977 -68682879 - B3 SINE B2 -2 214 2 5 990 1712 26 0 0 chr11 53161238 53161430 -68682426 + B2_Mm1a SINE B2 2 193 0 5 990 573 300 47 0 chr11 53161548 53161718 -68682138 - ID_B1 SINE B4 -20 204 27 5 990 914 288 81 0 chr11 53161749 53162018 -68681838 + MTE-int LTR MaLR 1155 1445 -135 5 990 305 292 103 9 chr11 53162018 53162031 -68681825 + B1F SINE Alu 1 117 -32 5 990 379 226 85 11 chr11 53162031 53162125 -68681731 + ID_B1 SINE B4 95 195 -29 5 990 228 200 0 0 chr11 53162123 53162163 -68681693 - B1_Mus1 SINE Alu -99 49 10 5 990 1079 236 77 74 chr11 53162173 53162539 -68681317 + MTEa LTR MaLR 8 374 -5 5 990 469 173 6 0 chr11 53162545 53162644 -68681212 + B1_Mus1 SINE Alu 6 108 -12 5 990 389 319 0 53 chr11 53162685 53162837 -68681019 - ID_B1 SINE B4 0 224 81 5 990 320 257 0 13 chr11 53162915 53162990 -68680866 - RSINE1 SINE B4 -84 81 8 5 990 644 206 0 51 chr11 53163026 53163164 -68680692 + B1_Mus2 SINE Alu 2 132 -15 5 990 539 212 82 15 chr11 53163188 53163322 -68680534 - B1_Mur1 SINE Alu -1 148 6 5 990 183 42 0 0 chr11 53163645 53163669 -68680187 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 990 271 182 43 57 chr11 53163676 53163746 -68680110 - B1F SINE Alu -3 146 78 5 990 360 43 0 0 chr11 53163747 53163793 -68680063 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 5 990 23 33 0 0 chr11 53163952 53163982 -68679874 + GC_rich Low_complexity Low_complexity 1 30 0 5 990 210 71 0 0 chr11 53164300 53164328 -68679528 + (CCG)n Simple_repeat Simple_repeat 2 29 0 5 990 23 33 0 0 chr11 53164562 53164592 -68679264 + GC_rich Low_complexity Low_complexity 1 30 0 5 990 195 69 0 0 chr11 53164643 53164672 -68679184 + (ACTG)n Simple_repeat Simple_repeat 3 31 0 5 990 222 91 0 0 chr11 53166761 53166794 -68677062 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 990 206 118 0 0 chr11 53166962 53166996 -68676860 + (T)n Simple_repeat Simple_repeat 1 34 0 5 990 1615 37 0 0 chr11 53167005 53167194 -68676662 - B2_Mm1t SINE B2 -3 190 2 5 990 799 215 0 26 chr11 53167195 53167348 -68676508 - B1_Mur1 SINE Alu 0 149 1 5 990 598 77 14 14 chr11 53167692 53167807 -68676049 - B1_Mur4 SINE Alu 0 150 38 5 990 313 250 92 46 chr11 53167851 53167960 -68675896 - PB1D7 SINE Alu -1 119 6 5 990 22 35 0 0 chr11 53168055 53168084 -68675772 + AT_rich Low_complexity Low_complexity 1 29 0 5 990 339 253 23 0 chr11 53168084 53168171 -68675685 - ID_B1 SINE B4 -7 217 129 5 990 219 167 0 0 chr11 53168172 53168214 -68675642 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 990 361 203 43 14 chr11 53168634 53168704 -68675152 - ID_B1 SINE B4 -64 160 89 5 990 445 219 69 4 chr11 53168738 53168852 -68675004 - B1_Mur2 SINE Alu 0 120 1 5 990 467 202 21 21 chr11 53168996 53169092 -68674764 - ID_B1 SINE B4 -7 217 122 5 990 674 192 76 8 chr11 53169344 53169475 -68674381 - B1_Mus2 SINE Alu -2 145 6 5 990 349 276 11 44 chr11 53169406 53169497 -68674359 - MT2B LTR ERVL -362 239 152 5 990 726 211 31 91 chr11 53169533 53169690 -68674166 - B3 SINE B2 -2 193 37 5 990 1437 58 0 35 chr11 53169690 53169888 -68673968 - B2_Mm2 SINE B2 -4 191 1 5 990 726 201 0 79 chr11 53169888 53169927 -68673929 - B3 SINE B2 -177 39 2 5 990 244 237 34 0 chr11 53170003 53170062 -68673794 - ORR1E LTR MaLR -8 371 311 5 990 297 127 55 0 chr11 53170088 53170143 -68673713 + MTE-int LTR MaLR 1310 1367 -213 5 990 195 42 0 0 chr11 53170143 53170167 -68673689 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 990 1305 25 0 12 chr11 53170167 53170330 -68673526 - B2_Mm2 SINE B2 -33 162 2 5 990 717 172 23 30 chr11 53170338 53170470 -68673386 + B1_Mur1 SINE Alu 19 149 0 5 990 189 94 0 0 chr11 53170470 53170502 -68673354 + (CAGAA)n Simple_repeat Simple_repeat 3 34 0 5 990 633 90 0 0 chr11 53170499 53170588 -68673268 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 990 333 358 89 25 chr11 53170675 53170910 -68672946 - ORR1E LTR MaLR -106 253 4 5 990 26 0 0 0 chr11 53171374 53171400 -68672456 + AT_rich Low_complexity Low_complexity 1 26 0 5 990 436 216 34 0 chr11 53171412 53171500 -68672356 - B3A SINE B2 -70 128 38 5 990 251 342 27 0 chr11 53171637 53171710 -68672146 - ID4_ SINE ID -3 80 6 5 990 1219 21 7 7 chr11 53171877 53172023 -68671833 - B1_Mus2 SINE Alu 0 147 2 5 990 877 256 84 60 chr11 53172198 53172531 -68671325 + MER58B DNA MER1_type 1 341 0 5 990 900 71 158 0 chr11 53172746 53172873 -68670983 - B1_Mm SINE Alu 0 147 1 5 990 28 61 0 0 chr11 53172874 53172923 -68670933 + AT_rich Low_complexity Low_complexity 1 49 0 5 990 192 77 0 0 chr11 53173286 53173312 -68670544 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 5 990 399 111 0 80 chr11 53173315 53173403 -68670453 - L1Md_F2 LINE L1 0 6582 6502 5 990 24 24 0 24 chr11 53173454 53173473 -68670383 + AT_rich Low_complexity Low_complexity 1 19 0 5 990 1022 116 7 0 chr11 53173473 53173619 -68670237 + B1_Mus1 SINE Alu 2 148 0 5 990 24 24 0 24 chr11 53173619 53173641 -68670215 + AT_rich Low_complexity Low_complexity 1 22 0 5 990 211 200 0 0 chr11 53173650 53173685 -68670171 + ID4_ SINE ID 3 37 -46 5 990 429 109 0 0 chr11 53173685 53173749 -68670107 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 990 36 53 0 0 chr11 53173763 53173820 -68670036 + AT_rich Low_complexity Low_complexity 1 57 0 5 990 1168 69 43 18 chr11 53174321 53174484 -68669372 - B2_Mm2 SINE B2 -2 193 27 5 990 595 222 0 71 chr11 53174621 53174747 -68669109 + ID_B1 SINE B4 102 218 -6 5 990 393 262 38 0 chr11 53174882 53174983 -68668873 - B1_Mur2 SINE Alu 0 149 3 5 990 255 254 17 0 chr11 53175095 53175154 -68668702 - B1F2 SINE Alu -88 61 2 5 990 1192 48 7 0 chr11 53175825 53175971 -68667885 - B1_Mus2 SINE Alu 0 147 1 5 990 762 139 71 28 chr11 53175982 53176123 -68667733 - B1_Mus1 SINE Alu 0 148 2 5 990 327 98 345 26 chr11 53176136 53176243 -68667613 - B2_Mm2 SINE B2 -7 188 48 5 990 842 103 71 0 chr11 53176293 53176419 -68667437 - B2_Mm1t SINE B2 -22 171 37 5 990 341 208 67 40 chr11 53176513 53176588 -68667268 - PB1D9 SINE Alu -8 112 36 5 990 604 246 77 0 chr11 53176641 53176771 -68667085 - B1_Mur2 SINE Alu 0 149 10 5 990 810 214 7 0 chr11 53177027 53177167 -68666689 - B1_Mus2 SINE Alu -5 142 2 5 990 543 276 60 0 chr11 53177389 53177523 -68666333 + ID_B1 SINE B4 80 221 -3 5 990 225 0 0 0 chr11 53177539 53177564 -68666292 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 990 1548 33 6 0 chr11 53177564 53177747 -68666109 - B2_Mm1a SINE B2 -8 185 2 5 990 214 164 157 48 chr11 53177812 53177895 -68665961 + PB1D9 SINE Alu 29 120 0 5 990 1158 68 0 0 chr11 53177936 53178083 -68665773 + B1_Mus1 SINE Alu 2 148 0 5 990 568 220 41 34 chr11 53178805 53178951 -68664905 - B1_Mur2 SINE Alu -1 148 2 5 990 40 49 0 0 chr11 53178956 53179017 -68664839 + AT_rich Low_complexity Low_complexity 1 61 0 5 990 733 254 29 6 chr11 53179126 53179300 -68664556 + B3 SINE B2 6 183 -33 5 990 999 140 13 6 chr11 53179280 53179438 -68664418 - B2_Mm2 SINE B2 -35 160 2 5 990 320 349 11 23 chr11 53179679 53179767 -68664089 + RSINE1 SINE B4 3 89 -76 5 990 743 294 11 22 chr11 53180630 53180814 -68663042 - B3 SINE B2 -34 182 1 5 990 712 139 107 0 chr11 53180976 53181098 -68662758 - B1_Mus1 SINE Alu 0 148 14 5 990 211 152 0 0 chr11 53181894 53181927 -68661929 + BC1_Mm scRNA scRNA 53 85 -67 5 990 287 25 25 0 chr11 53182357 53182397 -68661459 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 990 834 242 0 0 chr11 53182429 53182582 -68661274 - B3A SINE B2 -44 154 2 5 990 397 214 30 20 chr11 53182583 53182683 -68661173 + PB1D9 SINE Alu 15 115 -5 5 990 262 116 47 0 chr11 53182970 53183013 -68660843 - B3A SINE B2 -153 45 1 5 990 1101 134 21 5 chr11 53183021 53183208 -68660648 - B2_Mm2 SINE B2 -5 190 1 5 990 1712 11 0 0 chr11 53183217 53183407 -68660449 - B2_Mm1t SINE B2 -3 190 1 5 990 261 83 0 0 chr11 53183685 53183721 -68660135 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 5 990 491 179 0 0 chr11 53183721 53183799 -68660057 - B1_Mus2 SINE Alu -5 142 65 5 990 233 307 22 33 chr11 53183799 53183812 -68660044 - ID_B1 SINE B4 -5 219 130 5 990 1160 95 0 0 chr11 53183813 53183961 -68659895 - B1_Mus1 SINE Alu 0 148 1 5 990 672 277 39 29 chr11 53183990 53184198 -68659658 + B3 SINE B2 3 212 -4 5 990 631 243 42 0 chr11 53184431 53184575 -68659281 - B1_Mur4 SINE Alu 0 150 1 5 990 24 0 0 0 chr11 53184629 53184653 -68659203 + AT_rich Low_complexity Low_complexity 1 24 0 5 990 239 150 28 83 chr11 53184657 53184711 -68659145 + T-rich Low_complexity Low_complexity 52 105 0 5 990 1230 41 0 7 chr11 53184711 53184858 -68658998 - B1_Mm SINE Alu -1 146 1 5 990 239 150 28 83 chr11 53184858 53184881 -68658975 + T-rich Low_complexity Low_complexity 34 51 0 5 990 1222 41 0 13 chr11 53184881 53185030 -68658826 - B1_Mm SINE Alu 0 147 1 5 990 239 150 28 83 chr11 53185030 53185060 -68658796 + T-rich Low_complexity Low_complexity 3 33 0 5 990 614 267 135 25 chr11 53185158 53185358 -68658498 - ID_B1 SINE B4 -1 223 2 5 990 27 49 0 0 chr11 53185446 53185487 -68658369 + AT_rich Low_complexity Low_complexity 1 41 0 6 990 1137 81 23 11 chr11 53186770 53186788 -68657068 - B2_Mm2 SINE B2 -19 176 159 6 990 240 35 0 0 chr11 53186788 53186817 -68657039 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 990 1137 81 23 11 chr11 53186817 53186972 -68656884 - B2_Mm2 SINE B2 -37 158 2 6 990 990 200 39 14 chr11 53187386 53187594 -68656262 - B3 SINE B2 0 216 4 6 990 285 309 17 70 chr11 53187757 53187872 -68655984 + RSINE1 SINE B4 57 165 0 6 990 321 243 28 14 chr11 53187906 53187977 -68655879 + B3A SINE B2 1 72 -126 6 990 1136 76 14 0 chr11 53188082 53188227 -68655629 + B1_Mm SINE Alu 1 147 0 6 990 940 223 23 19 chr11 53188427 53188642 -68655214 + B3 SINE B2 1 216 0 6 990 594 257 124 31 chr11 53188650 53188807 -68655049 + B3 SINE B2 1 153 -63 6 990 384 40 0 0 chr11 53188807 53188857 -68654999 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 990 594 257 124 31 chr11 53188857 53188892 -68654964 + B3 SINE B2 154 210 -6 6 990 26 64 0 0 chr11 53189144 53189191 -68654665 + AT_rich Low_complexity Low_complexity 1 47 0 6 990 246 335 31 62 chr11 53190326 53190488 -68653368 + RSINE1 SINE B4 3 159 -6 6 990 1005 108 13 45 chr11 53190505 53190660 -68653196 - B1_Mur4 SINE Alu 0 150 1 6 990 241 294 76 0 chr11 53190971 53191063 -68652793 - PB1D10 SINE Alu -2 115 17 6 990 224 302 70 0 chr11 53190997 53191083 -68652773 - ID_B1 SINE B4 -55 169 78 6 990 885 227 61 0 chr11 53191244 53191442 -68652414 - B3 SINE B2 -6 210 1 6 990 402 21 0 0 chr11 53191463 53191510 -68652346 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 990 180 0 0 0 chr11 53191553 53191573 -68652283 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 990 360 0 0 0 chr11 53191589 53191629 -68652227 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 990 1644 21 16 0 chr11 53192072 53192262 -68651594 - B2_Mm1t SINE B2 0 193 1 6 990 577 270 91 17 chr11 53192450 53192680 -68651176 - Lx8 LINE L1 -73 7400 7154 6 990 230 287 0 0 chr11 53192894 53192988 -68650868 - L1M5 LINE L1 -303 5821 5728 6 990 227 326 0 0 chr11 53193256 53193305 -68650551 - B1F2 SINE Alu -100 49 1 6 990 525 294 28 0 chr11 53193653 53193796 -68650060 + B1F2 SINE Alu 2 148 -1 6 990 325 310 10 29 chr11 53194617 53194632 -68649224 + ID SINE ID 70 82 -142 6 990 320 270 8 98 chr11 53194632 53194755 -68649101 + PB1D10 SINE Alu 2 113 -4 6 990 478 209 162 15 chr11 53195102 53195238 -68648618 - RSINE1 SINE B4 -7 158 3 6 990 189 0 0 0 chr11 53195240 53195261 -68648595 + (T)n Simple_repeat Simple_repeat 1 21 0 6 990 675 165 74 0 chr11 53195408 53195529 -68648327 - B1_Mus1 SINE Alu -18 130 1 6 990 346 240 27 0 chr11 53195533 53195608 -68648248 - ID_B1 SINE B4 -2 222 146 6 990 810 21 0 0 chr11 53195830 53195926 -68647930 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 990 626 278 56 66 chr11 53195988 53196473 -68647383 - L1ME2 LINE L1 -317 6020 5533 6 990 254 185 37 0 chr11 53196788 53196842 -68647014 + MTEb LTR MaLR 321 376 -3 6 990 826 186 7 27 chr11 53196842 53196991 -68646865 + B1_Mur4 SINE Alu 2 147 -3 6 990 720 229 0 0 chr11 53197062 53197180 -68646676 + RSINE1 SINE B4 2 119 -46 6 990 683 182 39 16 chr11 53197167 53197295 -68646561 - B1_Mus1 SINE Alu -17 131 1 6 990 443 79 26 0 chr11 53197307 53197383 -68646473 - B2_Mm1t SINE B2 -2 191 114 6 990 342 228 139 0 chr11 53197391 53197492 -68646364 - PB1D7 SINE Alu 0 120 6 6 990 361 250 71 35 chr11 53197568 53197709 -68646147 - L1ME2 LINE L1 -5004 1396 1251 6 990 283 250 17 0 chr11 53197977 53198037 -68645819 - B1_Mus1 SINE Alu -83 65 5 6 990 1593 27 21 0 chr11 53198294 53198482 -68645374 - B2_Mm1t SINE B2 0 193 2 6 990 652 243 157 6 chr11 53198763 53198941 -68644915 + B3 SINE B2 2 206 -10 6 990 2159 67 35 0 chr11 53198992 53199274 -68644582 - ORR1A2 LTR MaLR 0 327 36 6 990 10007 146 65 33 chr11 53199274 53201094 -68642762 - ORR1A2-int LTR MaLR -2 1961 70 6 990 1266 27 0 0 chr11 53201094 53201240 -68642616 - B1_Mus2 SINE Alu 0 147 2 6 990 10007 146 65 33 chr11 53201240 53201320 -68642536 - ORR1A2-int LTR MaLR -1894 69 1 6 990 361 98 0 0 chr11 53201320 53201371 -68642485 - ORR1A2 LTR MaLR 0 346 296 6 990 432 250 28 0 chr11 53201429 53201537 -68642319 - L1M4 LINE L1 -1189 4957 4847 6 990 261 0 0 0 chr11 53201631 53201660 -68642196 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 990 1145 75 0 13 chr11 53201660 53201798 -68642058 - B1_Mus1 SINE Alu -9 139 2 6 990 21 0 0 0 chr11 53201941 53201962 -68641894 + AT_rich Low_complexity Low_complexity 1 21 0 6 990 1174 68 0 0 chr11 53201973 53202119 -68641737 + B1_Mus1 SINE Alu 3 148 0 6 990 436 224 40 20 chr11 53202130 53202230 -68641626 + B1F2 SINE Alu 47 148 -1 6 990 214 214 39 136 chr11 53202405 53202422 -68641434 - BC1_Mm scRNA scRNA -40 112 100 6 990 216 0 0 0 chr11 53202422 53202446 -68641410 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 990 676 318 9 5 chr11 53202446 53202658 -68641198 - ID_B1 SINE B4 -10 214 2 6 990 267 232 32 117 chr11 53202658 53202760 -68641096 - ID4 SINE ID -53 99 2 6 990 381 312 53 80 chr11 53202797 53202985 -68640871 - B3A SINE B2 -15 183 1 6 990 1704 16 0 0 chr11 53203330 53203522 -68640334 - B2_Mm1a SINE B2 0 193 2 6 990 1409 70 37 0 chr11 53203665 53203852 -68640004 - B2_Mm2 SINE B2 0 195 2 6 990 854 58 0 0 chr11 53203903 53204007 -68639849 + U6 snRNA snRNA 1 104 -3 6 990 466 216 78 35 chr11 53204026 53204141 -68639715 + PB1D9 SINE Alu 1 120 0 6 990 315 0 0 0 chr11 53204311 53204346 -68639510 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 990 1152 44 0 7 chr11 53204346 53204484 -68639372 - B1_Mm SINE Alu -10 137 1 6 990 258 244 0 0 chr11 53204757 53204802 -68639054 - RSINE1 SINE B4 -23 142 98 6 990 886 182 14 0 chr11 53204890 53205038 -68638818 - B1_Mur4 SINE Alu 0 150 1 6 990 421 241 45 18 chr11 53205048 53205158 -68638698 - PB1D9 SINE Alu -7 113 1 6 990 1195 61 7 0 chr11 53205394 53205541 -68638315 - B1_Mus1 SINE Alu 0 148 1 6 990 180 0 0 0 chr11 53205649 53205669 -68638187 + (T)n Simple_repeat Simple_repeat 1 20 0 6 990 1202 55 0 0 chr11 53205669 53205814 -68638042 - B1_Mm SINE Alu 0 147 3 6 990 495 298 28 14 chr11 53205837 53205980 -68637876 + B1F SINE Alu 2 146 -3 6 990 295 240 41 0 chr11 53206433 53206551 -68637305 - RSINE1 SINE B4 -6 159 2 6 990 242 306 0 0 chr11 53206565 53206614 -68637242 - tRNA-Ala-GCY_ tRNA tRNA -21 54 6 6 990 242 346 25 0 chr11 53206679 53206760 -68637096 - MER58A DNA MER1_type -38 186 104 6 990 640 284 17 95 chr11 53206780 53207021 -68636835 - ID_B1 SINE B4 0 224 3 6 990 610 227 15 52 chr11 53207056 53207206 -68636650 + B1F SINE Alu 3 147 -2 6 990 1058 44 66 0 chr11 53207904 53208041 -68635815 + B1_Mus2 SINE Alu 2 147 0 6 990 222 118 0 0 chr11 53208041 53208075 -68635781 + (A)n Simple_repeat Simple_repeat 1 34 0 6 990 1120 113 21 41 chr11 53209005 53209199 -68634657 + B2_Mm2 SINE B2 2 191 -4 6 990 1213 55 0 0 chr11 53209207 53209353 -68634503 + B1_Mus2 SINE Alu 2 147 0 6 990 21 0 0 0 chr11 53209353 53209374 -68634482 + AT_rich Low_complexity Low_complexity 1 21 0 6 990 650 178 30 44 chr11 53209375 53209510 -68634346 + B1_Mus1 SINE Alu 2 134 -14 6 990 261 0 0 0 chr11 53209510 53209539 -68634317 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 990 219 79 0 136 chr11 53209543 53209587 -68634269 + B1_Mus2 SINE Alu 97 134 -13 6 990 459 0 0 0 chr11 53209588 53209639 -68634217 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 6 990 219 79 0 136 chr11 53209643 53209687 -68634169 + B1_Mus2 SINE Alu 97 134 -13 6 990 423 0 0 0 chr11 53209688 53209735 -68634121 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 6 990 340 191 0 81 chr11 53209743 53209817 -68634039 - B1_Mur3 SINE Alu -12 137 70 6 990 201 74 0 0 chr11 53210143 53210170 -68633686 + (T)n Simple_repeat Simple_repeat 1 27 0 6 990 1104 71 0 14 chr11 53210190 53210333 -68633523 - B1_Mus1 SINE Alu -5 143 3 6 990 1243 96 23 0 chr11 53210495 53210672 -68633184 - B2_Mm2 SINE B2 -11 184 4 6 990 681 76 0 0 chr11 53210672 53210764 -68633092 + (TCCC)n Simple_repeat Simple_repeat 4 95 0 6 990 471 167 198 0 chr11 53210815 53210911 -68632945 - B3 SINE B2 -99 117 3 6 990 21 71 0 0 chr11 53210911 53210953 -68632903 + AT_rich Low_complexity Low_complexity 1 42 0 6 990 285 231 103 0 chr11 53211057 53211135 -68632721 - PB1D10 SINE Alu 0 117 32 6 990 230 0 33 0 chr11 53211148 53211178 -68632678 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 6 990 195 125 0 0 chr11 53211226 53211266 -68632590 + (T)n Simple_repeat Simple_repeat 1 40 0 6 990 3875 22 0 2 chr11 53212049 53212499 -68631357 + L1Md_A LINE L1 6133 6581 -1 6 990 1217 48 0 0 chr11 53212700 53212847 -68631009 - B1_Mus1 SINE Alu 0 148 2 6 990 31 44 0 0 chr11 53214080 53214125 -68629731 + AT_rich Low_complexity Low_complexity 1 45 0 6 990 242 125 21 0 chr11 53214141 53214189 -68629667 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 6 990 630 278 17 61 chr11 53214192 53214372 -68629484 - B3A SINE B2 -16 182 11 6 990 593 243 108 27 chr11 53214440 53214588 -68629268 - RSINE1 SINE B4 -4 161 2 6 990 253 303 0 0 chr11 53215001 53215067 -68628789 + ID4 SINE ID 2 67 -16 6 123 793 234 74 28 chr11 53215200 53215376 -68628480 - B3 SINE B2 -31 185 2 6 991 641 283 47 14 chr11 53215696 53215911 -68627945 + L1M4 LINE L1 5493 5714 -464 7 991 1479 134 0 30 chr11 53216277 53216508 -68627348 - MTC LTR MaLR -2 419 196 7 991 4174 66 4 11 chr11 53216530 53217064 -68626792 - L1_Mus1 LINE L1 0 6567 6038 7 991 1338 143 0 14 chr11 53217098 53217310 -68626546 - MTC LTR MaLR -212 209 1 7 991 1265 40 0 0 chr11 53217436 53217584 -68626272 - B1_Mus1 SINE Alu 0 148 1 7 991 263 250 24 48 chr11 53217584 53217668 -68626188 - L2a LINE L2 -11 3415 3334 7 991 285 29 0 0 chr11 53218241 53218275 -68625581 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 7 991 243 222 0 0 chr11 53218275 53218320 -68625536 - RSINE1 SINE B4 -46 119 75 7 991 240 111 0 0 chr11 53218431 53218467 -68625389 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 7 991 589 250 0 0 chr11 53218468 53218580 -68625276 - PB1D9 SINE Alu -8 112 1 7 991 242 131 48 32 chr11 53218670 53218691 -68625165 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 7 991 920 163 7 0 chr11 53218691 53218838 -68625018 - B1_Mur4 SINE Alu -1 149 2 7 991 242 131 48 32 chr11 53218838 53218879 -68624977 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 991 1165 74 0 0 chr11 53218893 53219041 -68624815 + B1_Mus1 SINE Alu 1 148 0 7 991 261 250 0 0 chr11 53219074 53219118 -68624738 - B1F2 SINE Alu -104 45 2 7 991 254 106 21 0 chr11 53219162 53219209 -68624647 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 991 448 331 81 98 chr11 53219248 53219337 -68624519 - B4 SINE B4 0 292 217 7 991 976 207 29 15 chr11 53219337 53219543 -68624313 - B3 SINE B2 -4 212 4 7 991 553 297 111 9 chr11 53219543 53219748 -68624108 - B4A SINE B4 -72 220 3 7 991 180 235 0 0 chr11 53219822 53219856 -68624000 + L2a LINE L2 3376 3409 -17 7 991 759 206 21 0 chr11 53220213 53220354 -68623502 - B1_Mur1 SINE Alu 0 149 6 7 991 204 143 0 23 chr11 53220840 53220883 -68622973 + T-rich Low_complexity Low_complexity 3 44 0 7 991 1103 76 7 0 chr11 53220884 53221028 -68622828 - B1_Mm SINE Alu -1 146 2 7 991 21 0 0 0 chr11 53221142 53221163 -68622693 + AT_rich Low_complexity Low_complexity 1 21 0 7 991 1190 56 0 0 chr11 53221163 53221306 -68622550 + B1_Mm SINE Alu 1 143 -4 7 991 374 0 22 0 chr11 53221308 53221354 -68622502 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 991 930 130 2 10 chr11 53222252 53222417 -68621439 - ORR1B1 LTR MaLR 0 394 165 7 991 233 245 131 0 chr11 53223131 53223213 -68620643 - ID4 SINE ID -57 95 5 7 991 820 140 36 22 chr11 53223570 53223709 -68620147 - B1_Mus2 SINE Alu -6 141 1 7 991 477 246 81 40 chr11 53223791 53223810 -68620046 - B2_Mm2 SINE B2 -6 189 171 7 991 925 221 70 0 chr11 53223810 53224009 -68619847 + B3 SINE B2 2 214 -2 7 991 477 246 81 40 chr11 53224009 53224025 -68619831 - B2_Mm2 SINE B2 -25 170 149 7 991 279 0 0 0 chr11 53224025 53224056 -68619800 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 991 405 0 0 0 chr11 53224056 53224100 -68619756 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 991 540 242 115 2 chr11 53224100 53224236 -68619620 - B3A SINE B2 -47 151 9 7 991 302 214 0 0 chr11 53224249 53224305 -68619551 - ID_B1 SINE B4 -6 218 163 7 991 25 31 0 0 chr11 53224684 53224716 -68619140 + AT_rich Low_complexity Low_complexity 1 32 0 7 991 366 242 44 0 chr11 53224781 53224872 -68618984 - RSINE1 SINE B4 -69 96 2 7 991 258 233 33 0 chr11 53225155 53225215 -68618641 - BC1_Mm scRNA scRNA -76 76 15 7 991 231 255 20 0 chr11 53225170 53225221 -68618635 - tRNA-Ala-GCY_ tRNA tRNA -21 54 3 7 991 534 239 76 14 chr11 53226024 53226168 -68617688 + RSINE1 SINE B4 3 155 -10 7 991 1721 176 90 9 chr11 53226483 53226816 -68617040 - ORR1B2 LTR MaLR -7 360 1 7 991 811 170 20 26 chr11 53226863 53227014 -68616842 + B1_Mur4 SINE Alu 1 150 0 7 991 216 163 0 0 chr11 53227014 53227057 -68616799 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 7 991 228 211 95 40 chr11 53227076 53227150 -68616706 + ID_B1 SINE B4 144 221 -3 7 991 268 268 53 9 chr11 53227160 53227273 -68616583 - L1MC4 LINE L1 -736 7306 7189 7 991 1843 217 164 4 chr11 53227317 53227767 -68616089 - RMER19B LTR ERVK 0 902 381 7 991 338 255 111 10 chr11 53227808 53227907 -68615949 + ID_B1 SINE B4 101 209 -15 7 991 766 153 211 22 chr11 53228427 53228607 -68615249 - B3 SINE B2 0 216 3 7 991 563 270 8 84 chr11 53230097 53230265 -68613591 + ID_B1 SINE B4 74 224 0 7 991 188 259 149 23 chr11 53230746 53230833 -68613023 - L2 LINE L2 -3231 188 91 7 991 222 242 128 32 chr11 53233223 53233317 -68610539 + B4 SINE B4 24 126 -166 7 991 638 240 17 10 chr11 53234891 53235071 -68608785 + B3 SINE B2 2 189 -6 7 991 863 168 0 75 chr11 53235236 53235397 -68608459 - B1_Mur1 SINE Alu 0 149 1 7 991 198 0 0 0 chr11 53236123 53236145 -68607711 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 7 991 1143 68 0 26 chr11 53237295 53237446 -68606410 - B1_Mus2 SINE Alu 0 147 1 7 991 753 169 40 40 chr11 53238167 53238315 -68605541 + B1_Mus1 SINE Alu 1 148 0 7 991 291 28 0 0 chr11 53238316 53238352 -68605504 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 991 554 225 12 123 chr11 53239690 53239852 -68604004 + B4A SINE B4 1 144 -148 7 991 858 157 209 0 chr11 53239866 53240038 -68603818 + B3 SINE B2 2 209 -7 7 991 475 230 10 39 chr11 53240490 53240594 -68603262 + RSINE1 SINE B4 59 159 -6 7 991 294 29 0 0 chr11 53240657 53240692 -68603164 + (T)n Simple_repeat Simple_repeat 1 35 0 7 991 1096 88 0 52 chr11 53240692 53240847 -68603009 - B1_Mus1 SINE Alu 0 148 2 7 991 910 129 42 21 chr11 53240945 53241088 -68602768 - B1_Mur3 SINE Alu -1 148 3 7 991 1255 149 47 0 chr11 53241299 53241514 -68602342 + URR1B DNA MER1_type 1 225 0 7 991 314 230 182 10 chr11 53242029 53242148 -68601708 + MIRb SINE MIR 60 203 -59 7 991 359 220 98 20 chr11 53242330 53242432 -68601424 + PB1D9 SINE Alu 2 111 -9 7 991 589 240 59 87 chr11 53242706 53242925 -68600931 - B3 SINE B2 0 216 4 7 991 530 157 18 64 chr11 53243076 53243185 -68600671 - PB1D9 SINE Alu -1 119 16 7 991 557 296 88 6 chr11 53243178 53243348 -68600508 - B3 SINE B2 -31 185 2 7 991 365 267 0 87 chr11 53243358 53243485 -68600371 - PB1D9 SINE Alu -2 118 3 7 991 327 309 8 53 chr11 53243638 53243665 -68600191 + ID_B1 SINE B4 64 187 -34 7 991 373 283 0 39 chr11 53243665 53243768 -68600088 + PB1D10 SINE Alu 9 107 -10 7 991 291 327 80 0 chr11 53245749 53245862 -68597994 - RSINE1 SINE B4 -2 163 42 7 991 286 254 369 47 chr11 53245940 53246089 -68597767 - B3 SINE B2 0 198 1 7 991 855 171 7 33 chr11 53246133 53246284 -68597572 - B1_Mur2 SINE Alu 0 149 3 7 991 321 248 110 37 chr11 53247400 53247509 -68596347 - PB1 SINE Alu 0 127 11 7 991 258 290 67 80 chr11 53247626 53247701 -68596155 - ID4_ SINE ID -7 76 3 7 991 25 0 0 0 chr11 53247785 53247810 -68596046 + AT_rich Low_complexity Low_complexity 1 25 0 7 991 326 263 26 0 chr11 53247811 53247887 -68595969 - B1F1 SINE Alu -66 83 6 7 991 1455 40 0 6 chr11 53248098 53248112 -68595744 - B2_Mm1t SINE B2 -19 174 161 7 991 198 0 0 0 chr11 53248112 53248134 -68595722 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7 991 1455 40 0 6 chr11 53248134 53248293 -68595563 - B2_Mm1t SINE B2 -33 160 2 7 991 189 0 0 0 chr11 53248295 53248316 -68595540 + (T)n Simple_repeat Simple_repeat 1 21 0 7 991 323 290 34 124 chr11 53248379 53248429 -68595427 + ID_B1 SINE B4 52 212 -12 7 991 620 236 47 0 chr11 53248429 53248556 -68595300 + B1_Mur2 SINE Alu 5 137 -12 7 991 1136 76 0 7 chr11 53249035 53249180 -68594676 - B1_Mus2 SINE Alu 0 147 4 7 991 236 339 63 58 chr11 53249355 53249381 -68594475 - B2_Mm1t SINE B2 0 193 2 7 991 538 312 18 30 chr11 53249381 53249546 -68594310 - RSINE1 SINE B4 0 165 3 7 991 253 288 0 0 chr11 53249551 53249610 -68594246 - ID_B1 SINE B4 -48 176 118 7 991 319 196 0 67 chr11 53249665 53249725 -68594131 - ID_B1 SINE B4 -18 206 151 7 991 241 300 28 74 chr11 53249725 53249772 -68594084 - B1F SINE Alu -46 102 1 7 991 264 307 137 10 chr11 53249786 53249888 -68593968 - PB1D7 SINE Alu -4 116 2 7 991 290 315 153 7 chr11 53249888 53249952 -68593904 - ID_B1 SINE B4 -134 90 5 7 991 973 154 0 13 chr11 53251720 53251871 -68591985 - B1_Mur3 SINE Alu 0 149 1 7 991 895 144 208 22 chr11 53251882 53252060 -68591796 - B3 SINE B2 -4 212 2 7 991 556 244 0 17 chr11 53252204 53252321 -68591535 - ID_B1 SINE B4 0 224 110 7 991 395 275 11 126 chr11 53252364 53252428 -68591428 - RSINE1 SINE B4 0 165 108 7 991 1330 97 0 6 chr11 53252428 53252605 -68591251 - B2_Mm2 SINE B2 -19 176 1 7 991 395 275 11 126 chr11 53252605 53252723 -68591133 - RSINE1 SINE B4 -58 107 4 7 991 680 245 99 0 chr11 53253001 53253193 -68590663 - B3 SINE B2 -5 211 1 7 991 730 244 88 5 chr11 53253216 53253410 -68590446 - B3 SINE B2 -5 211 2 7 991 512 191 95 0 chr11 53253506 53253611 -68590245 - PB1D9 SINE Alu 0 120 6 7 991 348 277 96 57 chr11 53253611 53253654 -68590202 - B4 SINE B4 -87 180 43 7 991 297 216 40 13 chr11 53253615 53253690 -68590166 - B1_Mus2 SINE Alu -59 88 12 7 991 356 286 62 29 chr11 53253750 53253928 -68589928 - L1M4 LINE L1 -645 5538 5353 7 991 474 250 95 16 chr11 53253928 53254054 -68589802 + B3 SINE B2 1 136 -80 8 991 270 150 0 0 chr11 53254074 53254114 -68589742 - L1M4 LINE L1 -839 5350 5311 7 991 1178 62 24 12 chr11 53254115 53254279 -68589577 - B2_Mm2 SINE B2 -28 167 2 8 991 206 118 0 0 chr11 53254315 53254349 -68589507 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 991 333 227 84 93 chr11 53254388 53254495 -68589361 - B3 SINE B2 0 216 111 8 991 968 99 28 0 chr11 53254528 53254670 -68589186 + B2_Mm1t SINE B2 2 147 -46 8 991 397 163 0 18 chr11 53254681 53254761 -68589095 + B2_Mm2 SINE B2 33 109 -107 8 991 361 197 105 0 chr11 53254858 53254934 -68588922 + B1_Mur1 SINE Alu 59 142 -7 8 991 548 329 37 25 chr11 53254960 53255122 -68588734 - RSINE1 SINE B4 0 165 2 8 991 285 324 83 21 chr11 53255939 53255959 -68587897 + YREP_Mm Unknown Unknown 152 246 -1566 8 991 643 184 9 9 chr11 53255959 53256074 -68587782 - ID_B1 SINE B4 -6 218 104 8 991 198 0 0 0 chr11 53256125 53256147 -68587709 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 991 1194 36 0 0 chr11 53256147 53256285 -68587571 - B1_Mus1 SINE Alu -9 139 2 8 991 232 345 13 3 chr11 53256564 53256661 -68587195 - Tigger7 DNA MER2_type -10 2481 2385 8 991 486 299 0 56 chr11 53256736 53256878 -68586978 - RSINE1 SINE B4 -29 136 3 8 991 311 253 0 84 chr11 53256907 53257002 -68586854 - B3A SINE B2 -1 197 111 8 991 594 168 19 0 chr11 53257082 53257189 -68586667 + B1_Mur4 SINE Alu 1 109 -41 8 991 638 193 14 0 chr11 53257189 53257329 -68586527 + GA-rich Low_complexity Low_complexity 3 144 0 8 991 225 271 42 14 chr11 53257414 53257471 -68586385 + B4 SINE B4 173 231 -61 8 991 1048 125 75 0 chr11 53257471 53257631 -68586225 + B2_Mm2 SINE B2 2 173 -22 8 991 270 237 61 34 chr11 53257682 53257816 -68586040 + B3 SINE B2 47 193 -2 8 991 24 0 0 0 chr11 53257816 53257840 -68586016 + AT_rich Low_complexity Low_complexity 1 24 0 8 991 455 331 31 0 chr11 53257905 53258065 -68585791 + RSINE1 SINE B4 1 165 0 8 991 246 296 22 22 chr11 53258120 53258149 -68585707 + ORR1B1-int LTR MaLR 619 647 -862 8 991 852 204 0 33 chr11 53258149 53258301 -68585555 + B1_Mus2 SINE Alu 1 147 0 8 991 394 260 160 0 chr11 53258410 53258510 -68585346 + RSINE1 SINE B4 3 118 -47 8 991 723 199 0 0 chr11 53258515 53258646 -68585210 + B1_Mur2 SINE Alu 6 136 -13 8 991 306 0 0 0 chr11 53258647 53258681 -68585175 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 8 991 595 311 14 29 chr11 53258681 53258962 -68584894 + B4A SINE B4 3 279 -13 8 991 208 284 0 0 chr11 53258991 53259065 -68584791 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 991 293 304 135 8 chr11 53259467 53259593 -68584263 + MIR SINE MIR 77 218 -44 8 991 370 303 32 32 chr11 53259923 53260080 -68583776 - B3 SINE B2 -56 160 4 8 991 817 236 99 0 chr11 53260128 53260319 -68583537 - ID_B1 SINE B4 -10 214 5 8 991 697 157 78 2 chr11 53260465 53260596 -68583260 - B1_Mur4 SINE Alu -10 140 1 8 991 1046 60 0 7 chr11 53260707 53260842 -68583014 - B1_Mus2 SINE Alu -9 138 5 8 991 1111 65 84 0 chr11 53260967 53261121 -68582735 - B2_Mm2 SINE B2 -27 168 2 8 991 323 106 0 0 chr11 53261156 53261203 -68582653 + B1_Mur1 SINE Alu 101 147 -2 8 991 820 189 193 6 chr11 53261209 53261390 -68582466 + B3 SINE B2 2 216 0 8 991 1103 57 57 0 chr11 53261417 53261557 -68582299 + B1_Mus1 SINE Alu 1 148 0 8 991 28 0 0 0 chr11 53261557 53261585 -68582271 + AT_rich Low_complexity Low_complexity 1 28 0 8 991 481 246 95 17 chr11 53261632 53261748 -68582108 + B4A SINE B4 106 230 -62 8 991 746 286 10 0 chr11 53261753 53261952 -68581904 + B3 SINE B2 10 210 -6 8 991 903 200 94 5 chr11 53262177 53262368 -68581488 + B3 SINE B2 2 209 -7 8 991 830 185 7 7 chr11 53262389 53262536 -68581320 + B1_Mur2 SINE Alu 1 147 -2 8 991 462 280 18 36 chr11 53262566 53262677 -68581179 + B1_Mur1 SINE Alu 1 109 -40 8 991 216 0 0 0 chr11 53262683 53262707 -68581149 + (TAA)n Simple_repeat Simple_repeat 1 24 0 8 991 33 0 0 0 chr11 53262707 53262740 -68581116 + AT_rich Low_complexity Low_complexity 1 33 0 8 991 895 287 79 24 chr11 53263261 53263590 -68580266 - ORR1E LTR MaLR -9 350 4 8 991 788 163 0 62 chr11 53265180 53265324 -68578532 - B1_Mur4 SINE Alu 0 150 16 8 991 321 26 0 0 chr11 53265328 53265366 -68578490 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 8 991 405 0 0 0 chr11 53265399 53265444 -68578412 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 991 756 255 19 0 chr11 53265485 53265642 -68578214 + ID_B1 SINE B4 8 167 -57 8 991 947 160 0 7 chr11 53265662 53265813 -68578043 + B1_Mur4 SINE Alu 1 150 0 8 991 695 172 44 22 chr11 53266387 53266524 -68577332 - B1_Mur4 SINE Alu -10 140 1 8 991 220 291 46 55 chr11 53266523 53266632 -68577224 - B1_Mur1 SINE Alu -1 148 41 8 991 542 264 70 54 chr11 53266524 53266602 -68577254 - ID_B1 SINE B4 -1 223 22 8 991 1077 285 12 0 chr11 53266698 53266947 -68576909 + B4 SINE B4 11 262 -30 8 991 492 18 0 0 chr11 53266947 53267004 -68576852 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 991 652 197 118 0 chr11 53267040 53267167 -68576689 + B1_Mur3 SINE Alu 1 142 -7 8 991 1293 100 26 5 chr11 53267177 53267368 -68576488 + B2_Mm2 SINE B2 1 195 0 8 991 239 148 37 0 chr11 53267391 53267445 -68576411 + (TATG)n Simple_repeat Simple_repeat 1 56 0 8 991 382 253 24 0 chr11 53267473 53267556 -68576300 - 7SK RNA RNA -92 239 155 8 991 398 187 0 62 chr11 53267597 53267677 -68576179 - 7SK RNA RNA -253 78 4 8 991 323 253 71 12 chr11 53267672 53267756 -68576100 + PB1D10 SINE Alu 29 117 0 8 991 667 221 81 11 chr11 53267854 53268028 -68575828 + B3A SINE B2 3 188 -10 8 991 608 191 168 38 chr11 53268134 53268319 -68575537 + B3 SINE B2 4 212 -4 8 991 940 153 7 0 chr11 53268347 53268484 -68575372 + B1_Mur4 SINE Alu 2 139 -11 8 991 409 262 85 100 chr11 53268727 53269037 -68574819 + MER90a LTR ERV1 1 346 -268 8 991 525 16 0 0 chr11 53269039 53269101 -68574755 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 8 991 447 283 85 0 chr11 53269118 53269224 -68574632 + B3A SINE B2 3 117 -81 8 991 822 274 59 13 chr11 53269388 53269514 -68574342 + B4A SINE B4 6 133 -159 8 991 468 0 0 0 chr11 53269514 53269566 -68574290 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 991 822 274 59 13 chr11 53269566 53269676 -68574180 + B4A SINE B4 134 253 -39 8 991 1162 89 0 0 chr11 53269682 53269828 -68574028 + B1_Mus1 SINE Alu 3 148 0 8 991 225 94 0 0 chr11 53269832 53269864 -68573992 + (A)n Simple_repeat Simple_repeat 1 32 0 8 991 24 53 0 0 chr11 53270419 53270457 -68573399 + AT_rich Low_complexity Low_complexity 1 38 0 8 991 337 212 22 66 chr11 53272313 53272404 -68571452 - RSINE1 SINE B4 0 165 79 8 991 2183 86 3 19 chr11 53272409 53272778 -68571078 - ORR1A2 LTR MaLR 0 346 3 8 991 566 228 22 52 chr11 53272964 53273098 -68570758 - B3 SINE B2 -86 130 1 8 991 233 400 16 24 chr11 53273098 53273187 -68570669 - B4A SINE B4 -197 95 8 8 991 796 209 11 65 chr11 53273242 53273426 -68570430 - B3 SINE B2 -10 206 33 8 991 624 195 151 24 chr11 53273445 53273571 -68570285 - B1_Mur2 SINE Alu -2 147 6 8 991 26 30 0 0 chr11 53273684 53273717 -68570139 + AT_rich Low_complexity Low_complexity 1 33 0 8 991 459 0 0 0 chr11 53273730 53273781 -68570075 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 991 308 242 121 0 chr11 53273806 53273905 -68569951 - RSINE1 SINE B4 -53 112 2 8 991 442 310 49 118 chr11 53274028 53274221 -68569635 + B4A SINE B4 1 191 -101 8 991 543 103 383 0 chr11 53274221 53274328 -68569528 + B1_Mus1 SINE Alu 1 148 0 8 991 442 310 49 118 chr11 53274328 53274371 -68569485 + B4A SINE B4 192 222 -70 8 991 812 201 0 20 chr11 53274371 53274523 -68569333 + B1_Mur2 SINE Alu 1 149 0 8 991 442 310 49 118 chr11 53274523 53274589 -68569267 + B4A SINE B4 223 283 -9 8 991 963 163 0 0 chr11 53274639 53274786 -68569070 - B1_Mur4 SINE Alu -2 148 2 8 991 240 292 178 19 chr11 53275609 53275766 -68568090 - L2b LINE L2 -7 3368 3187 8 991 358 231 78 32 chr11 53276009 53276188 -68567668 + MIRc SINE MIR 27 218 -44 8 991 1126 240 57 119 chr11 53277902 53277933 -68565923 - MTEa LTR MaLR -2 377 355 8 991 1454 82 0 10 chr11 53277933 53278129 -68565727 - B2_Mm2 SINE B2 -1 194 1 8 991 1126 240 57 119 chr11 53278129 53278499 -68565357 - MTEa LTR MaLR -25 354 1 8 991 354 275 98 8 chr11 53280799 53280931 -68562925 + B1F SINE Alu 1 144 -5 8 991 905 197 91 25 chr11 53281064 53281262 -68562594 + B3 SINE B2 6 216 0 8 991 287 227 62 74 chr11 53281277 53281358 -68562498 + ID4_ SINE ID 2 81 -2 8 991 1211 55 7 0 chr11 53281367 53281513 -68562343 + B1_Mus2 SINE Alu 1 147 0 8 991 284 163 0 11 chr11 53281513 53281600 -68562256 + A-rich Low_complexity Low_complexity 1 86 0 8 991 396 0 0 0 chr11 53281782 53281826 -68562030 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 991 288 0 0 0 chr11 53281826 53281857 -68561999 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 991 308 268 73 153 chr11 53282051 53282139 -68561717 + RSINE1 SINE B4 28 118 -47 8 991 1363 74 25 35 chr11 53282139 53282336 -68561520 - B2_Mm2 SINE B2 0 195 1 8 991 308 268 73 153 chr11 53282336 53282397 -68561459 + RSINE1 SINE B4 119 165 0 8 991 486 0 0 0 chr11 53282445 53282499 -68561357 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 8 991 200 275 0 68 chr11 53284509 53284583 -68559273 + CT-rich Low_complexity Low_complexity 2 70 0 9 991 270 0 0 0 chr11 53284602 53284632 -68559224 + (TCC)n Simple_repeat Simple_repeat 2 31 0 9 991 355 262 37 55 chr11 53284639 53284748 -68559108 - B3 SINE B2 -7 209 103 9 991 675 190 0 0 chr11 53284897 53285018 -68558838 - B3 SINE B2 -95 121 1 9 991 687 151 0 0 chr11 53285125 53285231 -68558625 + B1_Mur4 SINE Alu 36 141 -9 9 991 611 296 19 13 chr11 53285278 53285408 -68558448 + RSINE1 SINE B4 11 141 -24 9 991 657 38 0 0 chr11 53285408 53285488 -68558368 + (TC)n Simple_repeat Simple_repeat 1 80 0 9 991 611 296 19 13 chr11 53285488 53285511 -68558345 + RSINE1 SINE B4 142 164 -1 9 991 232 342 130 22 chr11 53285511 53285540 -68558316 + B3 SINE B2 152 211 -5 9 991 413 266 78 31 chr11 53285592 53285720 -68558136 - ID_B1 SINE B4 -5 219 86 9 991 819 194 0 14 chr11 53285740 53285886 -68557970 - B1_Mur1 SINE Alu -5 144 1 9 991 537 16 0 0 chr11 53285952 53286014 -68557842 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 991 343 282 89 108 chr11 53286016 53286219 -68557637 - RMER10A LTR ERVL -215 227 29 9 991 1022 158 126 37 chr11 53286346 53286537 -68557319 - B3 SINE B2 -7 209 2 9 991 215 0 67 0 chr11 53286663 53286693 -68557163 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 991 1000 252 168 31 chr11 53286899 53287226 -68556630 - MTE2b LTR MaLR -7 372 1 9 991 230 207 80 68 chr11 53287260 53287348 -68556508 + MIR SINE MIR 65 153 -109 9 991 612 311 25 22 chr11 53287348 53287624 -68556232 + B4A SINE B4 2 278 -14 9 991 251 202 11 160 chr11 53288083 53288177 -68555679 - B4 SINE B4 0 292 213 9 991 602 222 81 7 chr11 53288206 53288342 -68555514 - B4 SINE B4 -63 229 84 9 991 276 130 0 0 chr11 53288344 53288390 -68555466 + (CAT)n Simple_repeat Simple_repeat 2 47 0 9 991 825 202 86 20 chr11 53288391 53288588 -68555268 - B3 SINE B2 -6 210 1 9 991 982 152 7 0 chr11 53288617 53288762 -68555094 - B1_Mur2 SINE Alu -2 147 2 9 991 396 0 0 0 chr11 53288836 53288880 -68554976 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 991 489 291 40 7 chr11 53289649 53289801 -68554055 + RSINE1 SINE B4 2 158 -7 9 991 524 261 113 54 chr11 53289834 53290020 -68553836 - B3A SINE B2 -1 197 1 9 991 24 32 0 0 chr11 53290624 53290655 -68553201 + AT_rich Low_complexity Low_complexity 1 31 0 9 991 219 161 0 0 chr11 53290842 53290898 -68552958 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 991 919 164 7 14 chr11 53290909 53291057 -68552799 - B1_Mur3 SINE Alu -1 148 2 9 991 198 103 0 0 chr11 53293368 53293397 -68550459 + (CGG)n Simple_repeat Simple_repeat 3 31 0 9 991 522 86 0 0 chr11 53294117 53294198 -68549658 + (TC)n Simple_repeat Simple_repeat 1 81 0 9 991 189 0 0 0 chr11 53294198 53294219 -68549637 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 991 432 287 16 57 chr11 53294221 53294343 -68549513 - RSINE1 SINE B4 -38 127 11 9 991 389 294 22 0 chr11 53294364 53294456 -68549400 - PB1D10 SINE Alu -20 97 4 9 991 22 35 0 0 chr11 53294588 53294617 -68549239 + AT_rich Low_complexity Low_complexity 1 29 0 9 991 227 289 132 80 chr11 53294716 53295076 -68548780 - L2b LINE L2 -1 3425 3065 9 991 285 252 51 86 chr11 53295138 53295255 -68548601 - RSINE1 SINE B4 0 165 53 9 991 252 265 57 57 chr11 53295263 53295387 -68548469 + YREP_Mm Unknown Unknown 171 294 -1518 9 991 475 262 49 0 chr11 53295276 53295398 -68548458 - ID_B1 SINE B4 -4 220 93 9 991 225 0 0 0 chr11 53295398 53295423 -68548433 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 991 234 0 0 0 chr11 53295434 53295460 -68548396 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 991 410 222 24 12 chr11 53295461 53295543 -68548313 - PB1D10 SINE Alu -34 83 1 9 991 869 147 34 34 chr11 53295571 53295719 -68548137 - B1_Mur1 SINE Alu -1 148 1 9 991 742 211 28 0 chr11 53295747 53295889 -68547967 - B1_Mus1 SINE Alu -2 146 1 9 991 816 230 19 108 chr11 53295896 53296110 -68547746 - B3 SINE B2 0 195 1 9 991 1294 94 0 77 chr11 53296261 53296469 -68547387 + B2_Mm2 SINE B2 4 195 0 9 991 675 224 48 0 chr11 53296731 53296856 -68547000 + B3 SINE B2 17 147 -69 9 991 243 283 0 0 chr11 53296853 53296899 -68546957 - RSINE1 SINE B4 -117 48 3 9 991 839 236 26 20 chr11 53297415 53297610 -68546246 + B3A SINE B2 3 198 0 9 991 1005 132 14 82 chr11 53297626 53297787 -68546069 + B2_Mm2 SINE B2 2 157 -38 9 991 264 59 0 0 chr11 53297787 53297821 -68546035 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 9 991 1005 132 14 82 chr11 53297821 53297837 -68546019 + B2_Mm2 SINE B2 158 171 -24 9 991 1075 174 64 35 chr11 53297837 53298040 -68545816 + B3 SINE B2 1 209 -7 9 991 1042 135 0 0 chr11 53298040 53298188 -68545668 - B1_Mur4 SINE Alu -2 148 1 9 991 1005 132 14 82 chr11 53298188 53298215 -68545641 + B2_Mm2 SINE B2 172 193 -2 9 991 1317 60 37 27 chr11 53298249 53298437 -68545419 - B2_Mm2 SINE B2 -4 191 2 9 991 532 287 147 0 chr11 53298483 53298626 -68545230 - RSINE1 SINE B4 -1 164 1 9 991 375 264 182 0 chr11 53298649 53298770 -68545086 - B1F SINE Alu -1 148 6 9 991 258 268 55 27 chr11 53298919 53298992 -68544864 - ID_B1 SINE B4 -7 217 143 9 991 391 329 12 76 chr11 53299038 53299136 -68544720 - ID_B1 SINE B4 -57 167 78 9 991 378 91 0 0 chr11 53299136 53299191 -68544665 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 9 991 391 329 12 76 chr11 53299191 53299263 -68544593 - ID SINE ID -147 77 8 9 991 937 121 117 29 chr11 53299321 53299492 -68544364 - B2_Mm2 SINE B2 -8 187 2 9 991 3822 191 166 7 chr11 53299501 53299608 -68544248 - RMER1A Other Other -17 1013 873 9 991 279 0 0 0 chr11 53299608 53299639 -68544217 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 991 3822 217 115 22 chr11 53299639 53300877 -68542979 - RMER1A Other Other -158 872 2 9 991 862 260 204 18 chr11 53300845 53301294 -68542562 - RMER1B Other Other -587 479 1 9 991 1757 180 13 44 chr11 53301311 53301700 -68542156 - RMER17C LTR ERVK -29 381 5 9 991 216 67 0 0 chr11 53301841 53301871 -68541985 + (ATTTG)n Simple_repeat Simple_repeat 2 31 0 9 991 909 171 14 14 chr11 53302005 53302153 -68541703 - B1_Mur3 SINE Alu 0 149 2 9 991 207 100 0 0 chr11 53302170 53302200 -68541656 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 9 991 1161 76 7 0 chr11 53302204 53302349 -68541507 - B1_Mus1 SINE Alu -2 146 1 9 991 33 0 0 0 chr11 53302351 53302384 -68541472 + AT_rich Low_complexity Low_complexity 1 33 0 9 991 1168 54 0 33 chr11 53302406 53302558 -68541298 - B1_Mus2 SINE Alu 0 147 1 9 991 576 199 184 38 chr11 53302560 53302613 -68541243 - B3 SINE B2 0 216 142 9 991 405 0 0 0 chr11 53302613 53302658 -68541198 + (TATG)n Simple_repeat Simple_repeat 2 46 0 9 991 576 187 230 21 chr11 53302658 53302768 -68541088 - B3 SINE B2 -34 182 41 9 991 234 0 0 0 chr11 53302819 53302845 -68541011 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 9 991 198 320 40 13 chr11 53303063 53303139 -68540717 - MIR SINE MIR -157 105 28 9 991 887 185 149 0 chr11 53303576 53303771 -68540085 - URR1B DNA MER1_type 0 225 2 9 991 1070 61 7 52 chr11 53303776 53303931 -68539925 + B1_Mus1 SINE Alu 1 148 0 9 991 1223 65 101 0 chr11 53304473 53304641 -68539215 + B2_Mm2 SINE B2 2 186 -9 9 991 864 69 0 0 chr11 53304641 53304757 -68539099 + (GA)n Simple_repeat Simple_repeat 2 117 0 9 991 478 171 73 36 chr11 53304764 53304876 -68538980 + B1_Mus1 SINE Alu 1 120 0 9 991 538 220 127 44 chr11 53304931 53305112 -68538744 + B3A SINE B2 3 198 0 9 991 873 219 7 0 chr11 53305141 53305292 -68538564 + RSINE1 SINE B4 2 153 -12 9 991 21 36 0 0 chr11 53305292 53305320 -68538536 + AT_rich Low_complexity Low_complexity 1 28 0 9 991 594 302 4 152 chr11 53306023 53306124 -68537732 - ID_B1 SINE B4 -9 215 151 9 991 1229 55 0 0 chr11 53306124 53306270 -68537586 - B1_Mus1 SINE Alu -2 146 1 9 991 594 302 4 152 chr11 53306270 53306418 -68537438 - ID_B1 SINE B4 -74 150 3 9 991 896 201 17 97 chr11 53306431 53306511 -68537345 - B3A SINE B2 0 216 153 9 991 297 0 0 0 chr11 53306511 53306544 -68537312 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 991 896 191 17 17 chr11 53306544 53306703 -68537153 - B3A SINE B2 -38 160 1 9 991 180 0 0 0 chr11 53306791 53306811 -68537045 + (T)n Simple_repeat Simple_repeat 1 20 0 9 991 869 197 40 23 chr11 53307338 53307582 -68536274 + ORR1B2 LTR MaLR 127 417 -4 9 991 1383 57 11 22 chr11 53307582 53307762 -68536094 + B2_Mm2 SINE B2 2 179 -16 9 991 540 0 0 0 chr11 53307762 53307822 -68536034 + (GAA)n Simple_repeat Simple_repeat 1 60 0 9 991 427 218 19 164 chr11 53307822 53307837 -68536019 + ORR1B2 LTR MaLR 363 369 -1 9 991 502 195 83 25 chr11 53308434 53308555 -68535301 - B1F SINE Alu 0 149 22 9 991 506 273 86 0 chr11 53308447 53308586 -68535270 - ID_B1 SINE B4 -10 214 64 9 991 251 271 0 0 chr11 53308578 53308626 -68535230 - ID_B1 SINE B4 -60 164 117 9 991 430 303 0 0 chr11 53308696 53308805 -68535051 + PB1D7 SINE Alu 2 110 -10 9 991 237 132 0 0 chr11 53309098 53309136 -68534720 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 9 991 181 83 27 27 chr11 53309320 53309357 -68534499 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 9 991 383 226 101 81 chr11 53309460 53309609 -68534247 + RSINE1 SINE B4 3 154 -11 9 991 309 363 102 53 chr11 53309691 53310014 -68533842 + MLT1D LTR MaLR 1 339 -166 9 991 622 265 21 29 chr11 53310073 53310213 -68533643 + ID_B1 SINE B4 84 222 -2 9 991 1202 131 10 16 chr11 53311137 53311321 -68532535 + B2_Mm1a SINE B2 1 184 -9 9 991 501 17 0 0 chr11 53311321 53311379 -68532477 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 9 991 968 82 0 88 chr11 53311396 53311544 -68532312 + B1_Mus1 SINE Alu 3 137 -11 9 991 786 41 0 0 chr11 53311544 53311642 -68532214 + (GA)n Simple_repeat Simple_repeat 1 98 0 9 991 2416 87 10 12 chr11 53311860 53312226 -68531630 + ORR1A4 LTR MaLR 1 394 0 9 991 1176 97 11 22 chr11 53312245 53312424 -68531432 - B2_Mm1a SINE B2 -14 179 3 1 991 276 203 64 51 chr11 53312490 53312568 -68531288 - MER21B LTR ERV1 -26 837 759 1 991 646 152 0 9 chr11 53312571 53312677 -68531179 + MTD LTR MaLR 1 105 -314 1 991 821 123 7 0 chr11 53312679 53312817 -68531039 + (TCCC)n Simple_repeat Simple_repeat 3 141 0 1 991 428 208 10 0 chr11 53312834 53312935 -68530921 + CT-rich Low_complexity Low_complexity 1 102 0 1 991 771 178 0 29 chr11 53312949 53313088 -68530768 - B1_Mus1 SINE Alu -1 147 13 1 991 513 246 0 17 chr11 53313120 53313236 -68530620 + MTD LTR MaLR 134 247 -172 1 991 481 272 144 6 chr11 53313343 53313517 -68530339 + MTD LTR MaLR 219 416 -3 1 991 2025 93 4 0 chr11 53313504 53313773 -68530083 - ORR1A2 LTR MaLR 0 327 58 1 991 1068 199 5 32 chr11 53313770 53313957 -68529899 - B3 SINE B2 -30 186 5 1 991 649 306 151 0 chr11 53314016 53314235 -68529621 - MER21B LTR ERV1 -336 527 276 1 991 321 349 58 26 chr11 53315331 53315393 -68528463 + HAL1-3A_ME LINE L1 2037 2100 -758 1 991 235 242 134 62 chr11 53315393 53315490 -68528366 + PB1D9 SINE Alu 1 104 -16 1 991 321 349 58 26 chr11 53315490 53315540 -68528316 + HAL1-3A_ME LINE L1 2101 2149 -709 1 991 1098 95 7 0 chr11 53315540 53315687 -68528169 + B1_Mus1 SINE Alu 1 148 0 1 991 321 349 58 26 chr11 53315687 53315729 -68528127 + HAL1-3A_ME LINE L1 2150 2196 -662 1 991 270 0 0 0 chr11 53315790 53315820 -68528036 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 991 564 194 168 104 chr11 53315966 53316139 -68527717 - B3A SINE B2 -13 185 2 1 991 300 275 64 21 chr11 53316166 53316307 -68527549 - HAL1 LINE L1 -897 1610 1464 1 991 281 206 41 10 chr11 53316321 53316419 -68527437 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 1 991 506 223 106 78 chr11 53316469 53316493 -68527363 - B2_Mm2 SINE B2 -7 188 150 1 991 584 111 0 10 chr11 53316493 53316593 -68527263 + (TG)n Simple_repeat Simple_repeat 1 99 0 1 991 689 223 106 78 chr11 53316593 53316748 -68527108 - B3A SINE B2 -48 150 4 1 991 189 107 0 0 chr11 53316766 53316794 -68527062 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 991 429 312 77 59 chr11 53316794 53317015 -68526841 - B4A SINE B4 -67 225 1 1 991 233 355 13 26 chr11 53317132 53317210 -68526646 + RSINE1 SINE B4 83 159 -6 1 991 230 322 69 0 chr11 53317453 53317540 -68526316 + BC1_Mm scRNA scRNA 2 94 -58 1 991 485 278 89 67 chr11 53317900 53318182 -68525674 + B4A SINE B4 1 288 -4 1 991 180 260 115 13 chr11 53318387 53318465 -68525391 + L2c LINE L2 3298 3383 -4 1 991 2154 99 25 13 chr11 53319232 53319549 -68524307 + ORR1A4 LTR MaLR 1 321 -8 1 991 566 248 8 0 chr11 53319605 53319722 -68524134 - RSINE1 SINE B4 -45 120 3 1 991 218 32 32 0 chr11 53319766 53319797 -68524059 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 991 532 248 8 34 chr11 53319799 53319916 -68523940 - B1_Mur2 SINE Alu -12 137 24 1 991 437 295 26 9 chr11 53320042 53320155 -68523701 - PB1D7 SINE Alu -5 115 1 1 991 514 344 52 82 chr11 53320194 53320558 -68523298 + ORR1E LTR MaLR 2 354 -5 1 991 731 229 57 6 chr11 53320977 53321135 -68522721 + ID_B1 SINE B4 1 166 -58 1 991 419 212 71 0 chr11 53321061 53321146 -68522710 + PB1D10 SINE Alu 12 102 -15 1 991 684 232 129 46 chr11 53321344 53321538 -68522318 - B3 SINE B2 -6 210 1 1 991 1536 190 134 17 chr11 53321885 53322243 -68521613 - MTD LTR MaLR -1 418 19 1 991 544 295 96 46 chr11 53322235 53322537 -68521319 - ORR1E LTR MaLR -42 317 1 1 991 229 195 148 49 chr11 53322700 53322781 -68521075 - ORR1D2 LTR MaLR 0 370 282 1 991 578 248 80 141 chr11 53322871 53323009 -68520847 + B4 SINE B4 59 210 -82 1 991 306 0 0 0 chr11 53323009 53323043 -68520813 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 1 991 578 248 80 141 chr11 53323043 53323153 -68520703 + B4 SINE B4 211 292 0 1 991 477 332 72 64 chr11 53323201 53323436 -68520420 + B4 SINE B4 52 288 -4 1 991 351 0 0 0 chr11 53323440 53323479 -68520377 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 991 306 0 0 0 chr11 53323479 53323512 -68520344 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 991 679 168 0 17 chr11 53323531 53323646 -68520210 - B1_Mur1 SINE Alu -4 145 33 1 991 3855 111 9 21 chr11 53324308 53325148 -68518708 - Lx5 LINE L1 -951 6099 5259 1 991 4744 171 74 4 chr11 53325148 53325694 -68518162 + Lx5 LINE L1 6157 6719 -331 1 991 513 32 0 0 chr11 53325694 53325757 -68518099 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 991 4744 171 74 4 chr11 53325757 53326045 -68517811 + Lx5 LINE L1 6720 7049 -1 1 991 362 147 15 0 chr11 53326069 53326137 -68517719 + GA-rich Low_complexity Low_complexity 2 70 0 1 991 441 0 0 0 chr11 53326641 53326690 -68517166 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 991 636 137 47 121 chr11 53326948 53327079 -68516777 + ID_B1 SINE B4 86 213 -11 1 991 459 0 0 0 chr11 53327079 53327130 -68516726 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 991 459 0 0 0 chr11 53327130 53327180 -68516676 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 991 636 137 47 121 chr11 53327180 53327196 -68516660 + ID_B1 SINE B4 214 222 -2 1 991 233 200 0 0 chr11 53327315 53327360 -68516496 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 1 991 314 266 0 0 chr11 53327516 53327595 -68516261 + ID4_ SINE ID 2 80 -3 1 991 640 214 62 35 chr11 53327669 53327814 -68516042 - B1_Mur1 SINE Alu 0 149 1 1 991 274 180 0 57 chr11 53327909 53327962 -68515894 - RSINE1 SINE B4 -32 133 84 1 991 288 324 41 0 chr11 53328093 53328238 -68515618 + HAL1b LINE L1 1337 1487 -522 1 991 234 288 30 0 chr11 53328302 53328368 -68515488 + HAL1b LINE L1 1628 1695 -314 1 991 1167 63 7 0 chr11 53328380 53328523 -68515333 - B1_Mus1 SINE Alu 0 148 5 1 991 189 0 0 0 chr11 53328588 53328609 -68515247 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 991 522 224 0 87 chr11 53328650 53328777 -68515079 - PB1D9 SINE Alu -1 119 4 1 991 443 248 140 22 chr11 53328655 53328791 -68515065 - B4 SINE B4 -69 223 72 1 991 400 261 136 84 chr11 53328804 53328959 -68514897 - RSINE1 SINE B4 0 165 3 1 991 506 246 40 32 chr11 53329136 53329262 -68514594 - B4A SINE B4 -165 127 1 1 991 316 262 255 86 chr11 53329262 53329516 -68514340 + MLT1J LTR MaLR 47 343 -169 1 991 1207 54 0 20 chr11 53329664 53329814 -68514042 + B1_Mus1 SINE Alu 2 148 0 1 991 800 122 108 68 chr11 53329964 53330111 -68513745 + B2_Mm2 SINE B2 11 164 -31 1 991 243 0 0 0 chr11 53330111 53330138 -68513718 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1 991 800 122 108 68 chr11 53330138 53330166 -68513690 + B2_Mm2 SINE B2 165 193 -2 1 991 243 291 161 11 chr11 53330167 53330254 -68513602 + B1F2 SINE Alu 39 138 -11 1 991 258 247 14 0 chr11 53330389 53330462 -68513394 - ID4 SINE ID -9 74 1 1 991 387 0 0 0 chr11 53331198 53331241 -68512615 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 991 414 215 200 32 chr11 53331241 53331366 -68512490 - B3A SINE B2 -50 148 3 1 991 589 207 72 0 chr11 53331718 53331829 -68512027 - RSINE1 SINE B4 -44 121 3 1 991 845 230 58 24 chr11 53331992 53332197 -68511659 - ID_B1 SINE B4 -1 223 12 1 991 423 0 0 0 chr11 53332358 53332405 -68511451 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 991 26 74 0 0 chr11 53333320 53333374 -68510482 + GC_rich Low_complexity Low_complexity 1 54 0 1 991 182 150 25 0 chr11 53334333 53334373 -68509483 + GA-rich Low_complexity Low_complexity 1 41 0 1 991 351 0 0 0 chr11 53334789 53334828 -68509028 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 991 307 298 135 0 chr11 53334977 53335118 -68508738 + MIR SINE MIR 68 227 -35 1 991 225 0 0 0 chr11 53335565 53335590 -68508266 + (T)n Simple_repeat Simple_repeat 1 25 0 1 991 830 170 0 0 chr11 53335881 53336016 -68507840 - B1_Mur3 SINE Alu -11 138 4 1 991 21 0 0 0 chr11 53336068 53336089 -68507767 + AT_rich Low_complexity Low_complexity 1 21 0 1 991 379 257 204 7 chr11 53336107 53336244 -68507612 - RSINE1 SINE B4 0 165 2 1 991 618 251 56 8 chr11 53340384 53340543 -68503313 - ID_B1 SINE B4 -48 244 76 1 991 308 208 14 27 chr11 53340588 53340662 -68503194 - ID2 SINE ID -9 74 2 1 991 891 163 7 0 chr11 53340763 53340910 -68502946 - B1_Mur4 SINE Alu -2 148 1 1 991 368 298 0 0 chr11 53340918 53341022 -68502834 - PB1D10 SINE Alu -9 108 5 1 991 220 333 61 20 chr11 53341197 53341344 -68502512 + MIRc SINE MIR 83 235 -33 1 991 686 98 15 29 chr11 53342575 53342712 -68501144 + (TC)n Simple_repeat Simple_repeat 1 135 0 1 991 342 0 0 0 chr11 53342729 53342767 -68501089 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 991 565 237 50 0 chr11 53343393 53343532 -68500324 + RSINE1 SINE B4 4 149 -16 1 991 219 186 0 0 chr11 53343544 53343587 -68500269 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 991 740 269 81 0 chr11 53343624 53343810 -68500046 + ID_B1 SINE B4 18 218 -6 1 991 297 0 0 0 chr11 53343835 53343868 -68499988 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 991 537 286 133 0 chr11 53345127 53345323 -68498533 + ID_B1 SINE B4 2 223 -1 1 991 335 264 86 9 chr11 53345329 53345463 -68498393 + B1F1 SINE Alu 1 136 -11 1 991 534 16 0 0 chr11 53345698 53345761 -68498095 + (CTGGGG)n Simple_repeat Simple_repeat 1 63 0 1 991 1009 99 63 47 chr11 53345966 53346156 -68497700 - B2_Mm2 SINE B2 0 195 3 1 123 730 174 140 13 chr11 53346192 53346349 -68497507 + B3 SINE B2 37 213 -3 1 992 448 59 0 39 chr11 53346348 53346463 -68497393 - B2_Mm2 SINE B2 -5 190 47 1 992 1187 110 0 0 chr11 53346495 53346668 -68497188 - B2_Mm2 SINE B2 -22 173 1 1 992 31 0 0 0 chr11 53346680 53346711 -68497145 + AT_rich Low_complexity Low_complexity 1 31 0 1 992 636 254 107 0 chr11 53346714 53346891 -68496965 + B3A SINE B2 3 198 0 1 992 1160 41 7 0 chr11 53346895 53347040 -68496816 + B1_Mm SINE Alu 2 147 0 1 992 212 0 36 0 chr11 53347040 53347068 -68496788 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 992 300 192 0 0 chr11 53347629 53347681 -68496175 - RSINE1 SINE B4 -110 55 4 1 992 314 167 16 16 chr11 53347712 53347773 -68496083 - ID4_ SINE ID -10 73 13 1 992 406 241 5 68 chr11 53351506 53351697 -68492159 + C-rich Low_complexity Low_complexity 2 180 0 1 992 438 244 16 59 chr11 53351721 53351908 -68491948 + C-rich Low_complexity Low_complexity 2 180 0 1 992 303 256 48 12 chr11 53351890 53352056 -68491800 + (CTCA)n Simple_repeat Simple_repeat 3 174 0 1 992 481 237 0 63 chr11 53352032 53352221 -68491635 + C-rich Low_complexity Low_complexity 2 178 0 1 992 443 247 28 40 chr11 53352273 53352450 -68491406 + C-rich Low_complexity Low_complexity 6 180 0 1 992 227 103 0 25 chr11 53353149 53353189 -68490667 + (GAA)n Simple_repeat Simple_repeat 2 40 0 1 992 269 212 0 29 chr11 53353208 53353276 -68490580 - ID4_ SINE ID -15 68 3 1 992 577 180 40 6 chr11 53353678 53353851 -68490005 + CT-rich Low_complexity Low_complexity 1 179 0 1 992 300 200 107 57 chr11 53355800 53355922 -68487934 + ID_B1 SINE B4 83 210 -14 1 992 302 169 169 7 chr11 53357070 53357152 -68486704 + PB1D10 SINE Alu 22 120 -7 1 992 200 35 35 0 chr11 53357153 53357182 -68486674 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 992 218 325 13 0 chr11 53357188 53357265 -68486591 + ID4_ SINE ID 4 81 -2 1 992 295 326 69 37 chr11 53357911 53358099 -68485757 - MIR SINE MIR -44 218 25 1 992 1195 41 0 0 chr11 53358378 53358524 -68485332 + B1_Mm SINE Alu 2 147 0 1 992 731 209 0 26 chr11 53358653 53358805 -68485051 + B1_Mur4 SINE Alu 1 148 -2 1 992 340 341 0 0 chr11 53359298 53359386 -68484470 + PB1D10 SINE Alu 1 88 -29 1 992 381 93 0 0 chr11 53359393 53359447 -68484409 + (ATG)n Simple_repeat Simple_repeat 1 54 0 1 992 392 188 0 0 chr11 53359587 53359651 -68484205 + RSINE1 SINE B4 36 99 -66 1 992 351 0 0 0 chr11 53359657 53359696 -68484160 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 992 510 198 27 0 chr11 53360404 53360515 -68483341 + PB1D9 SINE Alu 1 114 -6 1 992 1091 120 65 37 chr11 53360786 53361002 -68482854 + URR1A DNA MER1_type 5 226 0 1 992 25 0 0 0 chr11 53363054 53363079 -68480777 + AT_rich Low_complexity Low_complexity 1 25 0 1 992 525 165 8 16 chr11 53363543 53363666 -68480190 + (TATG)n Simple_repeat Simple_repeat 4 125 0 1 992 710 215 266 54 chr11 53363670 53363911 -68479945 - B4 SINE B4 0 292 1 1 992 545 228 9 0 chr11 53363982 53364096 -68479760 + ID_B1 SINE B4 110 224 0 1 992 365 0 22 0 chr11 53364327 53364372 -68479484 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 992 622 228 15 104 chr11 53364372 53364564 -68479292 - B3A SINE B2 -22 176 2 1 992 216 182 35 35 chr11 53365022 53365079 -68478777 + B3A SINE B2 5 61 -137 1 992 948 224 21 0 chr11 53366114 53366306 -68477550 + ID_B1 SINE B4 28 223 -1 1 992 1730 138 133 18 chr11 53366370 53366709 -68477147 - ORR1C1 LTR MaLR 0 378 1 1 992 236 261 195 8 chr11 53366758 53366887 -68476969 - ID_B1 SINE B4 -69 155 6 1 992 305 226 16 0 chr11 53366930 53366992 -68476864 + B3 SINE B2 126 188 -28 1 992 302 180 98 0 chr11 53367011 53367072 -68476784 + L1MB8 LINE L1 5899 5965 -213 1 992 1392 130 8 85 chr11 53367130 53367270 -68476586 - RLTR14 LTR ERV1 0 382 263 1 992 1581 26 0 20 chr11 53367270 53367467 -68476389 - B2_Mm1a SINE B2 0 193 1 1 992 1392 130 8 85 chr11 53367467 53367586 -68476270 - RLTR14 LTR ERV1 -120 262 143 1 992 8043 253 15 10 chr11 53367586 53369686 -68474170 - RLTR6-int LTR ERV1 -4648 3130 807 1 992 1817 275 39 53 chr11 53369716 53370456 -68473400 - RLTR6-int LTR ERV1 -6724 728 5 1 992 588 234 47 61 chr11 53370458 53370702 -68473154 - LTRIS4 LTR ERV1 0 507 276 1 992 27 0 0 0 chr11 53370789 53370816 -68473040 + GC_rich Low_complexity Low_complexity 1 27 0 1 992 825 173 0 14 chr11 53370867 53371008 -68472848 - B1_Mus1 SINE Alu -7 141 3 1 992 715 212 59 29 chr11 53371620 53371790 -68472066 + B3A SINE B2 2 176 -22 1 992 405 0 0 0 chr11 53371792 53371837 -68472019 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 992 198 0 0 0 chr11 53371837 53371858 -68471998 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 992 315 0 0 0 chr11 53371858 53371892 -68471964 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 992 447 19 0 0 chr11 53372108 53372160 -68471696 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 992 546 16 0 0 chr11 53372160 53372222 -68471634 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 992 1767 177 201 34 chr11 53372546 53372693 -68471163 - RLTR18B LTR ERVK -1 511 322 1 992 1095 82 0 0 chr11 53372693 53372840 -68471016 + B1_Mus1 SINE Alu 2 148 0 1 992 1767 177 201 34 chr11 53372840 53373101 -68470755 - RLTR18B LTR ERVK -191 321 35 1 992 525 228 62 23 chr11 53373206 53373336 -68470520 + MTE2a LTR MaLR 213 347 -32 1 992 381 267 9 28 chr11 53373523 53373631 -68470225 - MTEb LTR MaLR -8 371 266 1 992 188 83 56 0 chr11 53373749 53373764 -68470092 + (TTCTC)n Simple_repeat Simple_repeat 1 15 0 1 992 1350 67 0 0 chr11 53373764 53373942 -68469914 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 1 992 188 83 56 0 chr11 53373942 53373962 -68469894 + (TTCTC)n Simple_repeat Simple_repeat 4 25 0 1 992 1088 102 0 0 chr11 53373962 53374109 -68469747 - B1_Mus1 SINE Alu -1 147 1 1 992 235 301 151 20 chr11 53374153 53374299 -68469557 - L2a LINE L2 -190 3236 3072 1 992 242 338 105 49 chr11 53374310 53374453 -68469403 + MIRc SINE MIR 51 201 -67 1 992 651 231 0 0 chr11 53374463 53374597 -68469259 - B1_Mur4 SINE Alu -5 145 12 1 992 1136 82 0 0 chr11 53374642 53374789 -68469067 + B1_Mus1 SINE Alu 2 148 0 1 992 1190 92 40 6 chr11 53374809 53374983 -68468873 - B2_Mm2 SINE B2 -14 181 2 1 992 522 271 43 55 chr11 53375043 53375207 -68468649 - RSINE1 SINE B4 0 165 4 1 992 804 188 193 0 chr11 53375232 53375408 -68468448 + B3 SINE B2 2 211 -5 1 992 574 243 0 20 chr11 53375473 53375624 -68468232 - B1F1 SINE Alu -1 148 1 1 992 241 310 100 0 chr11 53375784 53375884 -68467972 - L2a LINE L2 -536 2883 2774 1 992 2195 166 21 218 chr11 53375964 53376540 -68467316 - RMER19C LTR ERVK 0 611 146 1 992 1114 62 14 0 chr11 53376540 53376685 -68467171 + B1_Mus1 SINE Alu 2 148 0 1 992 2195 166 21 218 chr11 53376685 53376869 -68466987 - RMER19C LTR ERVK -466 145 1 1 992 823 240 75 0 chr11 53376921 53377121 -68466735 - B3 SINE B2 -1 215 1 1 992 401 237 40 63 chr11 53377148 53377274 -68466582 - B1_Mur2 SINE Alu 0 149 27 1 992 435 255 192 19 chr11 53377293 53377449 -68466407 - ID_B1 SINE B4 -20 204 22 1 992 1034 22 71 14 chr11 53377571 53377711 -68466145 - B1_Mus1 SINE Alu 0 148 1 1 992 4631 119 34 4 chr11 53378477 53379193 -68464663 - RMER19A LTR ERVK 0 737 1 1 992 550 259 0 69 chr11 53379246 53379420 -68464436 + RSINE1 SINE B4 4 165 0 1 992 1069 88 0 0 chr11 53379623 53379770 -68464086 - B1_Mus1 SINE Alu 0 148 2 1 992 472 283 106 21 chr11 53379790 53379978 -68463878 - B3 SINE B2 -12 204 1 1 992 402 208 86 10 chr11 53380050 53380165 -68463691 + B1_Mur2 SINE Alu 3 120 0 1 992 1017 177 67 52 chr11 53380248 53380516 -68463340 + RMER10A LTR ERVL 2 273 -169 1 992 895 204 59 15 chr11 53381831 53382035 -68461821 - B3 SINE B2 -3 213 1 1 992 326 252 31 102 chr11 53382295 53382342 -68461514 + B1F SINE Alu 31 69 -80 1 992 913 111 30 0 chr11 53382342 53382477 -68461379 + B1_Mur4 SINE Alu 2 140 -10 1 992 326 252 31 102 chr11 53382477 53382557 -68461299 + B1F SINE Alu 70 149 0 1 992 278 307 49 10 chr11 53382732 53382834 -68461022 - L2c LINE L2 -227 3160 3055 1 992 462 206 0 85 chr11 53383336 53383442 -68460414 - PB1D9 SINE Alu -12 108 12 1 992 1150 91 85 0 chr11 53383458 53383634 -68460222 - B2_Mm2 SINE B2 -3 192 2 1 992 332 0 47 0 chr11 53383675 53383718 -68460138 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 992 794 172 69 50 chr11 53384577 53384779 -68459077 - B3 SINE B2 -9 207 2 1 992 718 184 165 16 chr11 53384886 53385074 -68458782 - B3 SINE B2 0 216 1 1 992 385 155 129 52 chr11 53385110 53385220 -68458636 - B1_Mur4 SINE Alu 0 150 30 1 992 378 0 0 0 chr11 53385220 53385262 -68458594 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 992 287 258 10 70 chr11 53385339 53385439 -68458417 - ID_B1 SINE B4 -2 222 129 1 992 301 287 268 0 chr11 53385453 53385610 -68458246 - L1M4 LINE L1 -375 5809 5611 1 992 252 0 0 0 chr11 53385618 53385646 -68458210 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 992 306 106 21 0 chr11 53385669 53385716 -68458140 + B1_Mus1 SINE Alu 22 69 -79 1 992 1247 273 142 17 chr11 53386067 53386383 -68457473 - L1MB7 LINE L1 -1 6183 5823 1 992 300 53 0 0 chr11 53386383 53386421 -68457435 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 1 992 1247 273 142 17 chr11 53386421 53386768 -68457088 - L1MB7 LINE L1 -362 5822 5437 1 992 527 302 169 28 chr11 53386881 53387415 -68456441 - L1MC LINE L1 -1897 4249 3641 1 992 631 176 16 8 chr11 53387499 53387625 -68456231 - B1_Mur4 SINE Alu -2 148 22 1 992 505 340 113 47 chr11 53387678 53387864 -68455992 - L1MB7 LINE L1 -2844 3302 3080 1 992 624 150 103 22 chr11 53387864 53388000 -68455856 - B1_Mur2 SINE Alu -1 148 2 1 992 505 316 88 63 chr11 53388000 53388179 -68455677 - L1MB7 LINE L1 -3067 3079 2914 1 992 225 0 0 0 chr11 53388179 53388204 -68455652 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 992 422 316 88 63 chr11 53388204 53388238 -68455618 - L1MB7 LINE L1 -3233 2913 2885 1 992 447 248 86 13 chr11 53388240 53388391 -68455465 - B4A SINE B4 -130 162 1 1 992 410 258 106 23 chr11 53388443 53388685 -68455171 - L1MEc LINE L1 -3304 3015 2757 1 992 1064 73 135 35 chr11 53388706 53388876 -68454980 - B2_Mm2 SINE B2 -8 187 1 1 992 274 192 0 0 chr11 53389089 53389150 -68454706 - RLTR12B LTR ERVK -507 61 1 1 992 659 220 28 7 chr11 53389522 53389664 -68454192 - B1_Mur2 SINE Alu -1 148 4 1 992 248 303 32 24 chr11 53389688 53389813 -68454043 - L1MEc LINE L1 -6260 140 15 1 992 3888 53 6 6 chr11 53389837 53390312 -68453544 - MT2C_Mm LTR ERVL 0 475 1 1 992 573 273 35 5 chr11 53390523 53390659 -68453197 + PB1 SINE Alu 1 136 -13 1 992 233 196 0 0 chr11 53390659 53390705 -68453151 - L1MC1 LINE L1 -21 6312 6267 1 992 501 84 0 0 chr11 53391726 53391797 -68452059 + (TTTTC)n Simple_repeat Simple_repeat 5 75 0 1 992 222 37 0 0 chr11 53391793 53391820 -68452036 + (TCCTG)n Simple_repeat Simple_repeat 4 30 0 1 992 653 165 0 0 chr11 53391827 53391930 -68451926 - B1_Mur1 SINE Alu 0 149 47 1 992 264 284 37 128 chr11 53391833 53391942 -68451914 - B4 SINE B4 -72 220 122 1 992 570 274 7 7 chr11 53392101 53392248 -68451608 - B1F1 SINE Alu 0 149 3 1 992 385 129 16 0 chr11 53392944 53393006 -68450850 + RSINE1 SINE B4 35 97 -68 1 992 967 150 0 0 chr11 53393511 53393658 -68450198 - B1_Mur4 SINE Alu 0 150 4 1 992 24 0 0 0 chr11 53393774 53393798 -68450058 + AT_rich Low_complexity Low_complexity 1 24 0 1 992 289 130 327 36 chr11 53393803 53393913 -68449943 - B2_Mm2 SINE B2 -7 188 47 1 992 1216 97 28 6 chr11 53394010 53394186 -68449670 - B2_Mm2 SINE B2 -14 181 2 1 992 1152 197 10 5 chr11 53394190 53394394 -68449462 - B3 SINE B2 -11 205 1 1 992 276 30 0 0 chr11 53394394 53394427 -68449429 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 992 505 179 198 0 chr11 53394427 53394533 -68449323 - B1_Mm SINE Alu -14 133 7 1 992 930 103 14 22 chr11 53394587 53394726 -68449130 - B1_Mus2 SINE Alu 0 147 10 1 992 379 222 0 156 chr11 53394624 53394752 -68449104 - MT2B LTR ERVL -337 264 157 1 992 218 291 56 44 chr11 53394858 53394948 -68448908 - MIRb SINE MIR -133 135 45 1 992 587 248 26 0 chr11 53395061 53395174 -68448682 + B1_Mur1 SINE Alu 3 118 -31 1 992 374 218 38 13 chr11 53395171 53395250 -68448606 - B1F SINE Alu -55 94 14 1 992 343 298 28 19 chr11 53395250 53395276 -68448580 - ID_B1 SINE B4 -51 172 67 1 992 641 193 89 0 chr11 53395284 53395419 -68448437 - B1_Mur1 SINE Alu 0 149 3 1 992 2929 57 113 2 chr11 53395734 53396141 -68447715 - L1_Mus3 LINE L1 0 6638 6187 1 992 280 279 25 0 chr11 53396185 53396264 -68447592 - PB1 SINE Alu -12 115 35 1 992 355 230 92 0 chr11 53396518 53396605 -68447251 + ID_B1 SINE B4 2 96 -128 1 992 285 208 78 0 chr11 53396604 53396681 -68447175 + PB1D10 SINE Alu 34 116 -1 1 992 280 260 69 10 chr11 53397005 53397106 -68446750 - L1MC5 LINE L1 -106 7855 7749 1 992 883 123 29 14 chr11 53397137 53397277 -68446579 + B1_Mus1 SINE Alu 1 142 -6 1 992 328 300 32 108 chr11 53397179 53397336 -68446520 + RLTR25B LTR ERVK 441 585 -443 1 992 294 306 112 33 chr11 53398054 53398206 -68445650 - RSINE1 SINE B4 0 165 2 1 992 242 301 48 24 chr11 53398649 53398775 -68445081 - L1MB3 LINE L1 -235 5948 5820 1 992 33 25 0 0 chr11 53399074 53399114 -68444742 + AT_rich Low_complexity Low_complexity 1 40 0 1 992 331 244 158 0 chr11 53399381 53399463 -68444393 + B3 SINE B2 2 96 -120 1 992 21 0 0 0 chr11 53399553 53399574 -68444282 + AT_rich Low_complexity Low_complexity 1 21 0 1 992 1434 70 11 16 chr11 53399579 53399767 -68444089 - B2_Mm2 SINE B2 -7 188 2 1 992 606 196 27 0 chr11 53399873 53399985 -68443871 + PB1D9 SINE Alu 1 115 -5 1 992 425 331 84 0 chr11 53400023 53400177 -68443679 - B4 SINE B4 -2 290 124 1 992 238 309 85 80 chr11 53400365 53400541 -68443315 + RLTR11A2 LTR ERVK 210 386 -141 1 992 480 229 58 17 chr11 53401062 53401182 -68442674 + MER58A DNA MER1_type 1 125 -99 1 992 571 135 234 51 chr11 53401347 53401513 -68442343 + B3 SINE B2 1 187 -8 1 992 1159 51 0 0 chr11 53401521 53401658 -68442198 + B1_Mus2 SINE Alu 2 138 -9 1 992 207 0 0 0 chr11 53401658 53401681 -68442175 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 992 22 0 0 0 chr11 53404301 53404323 -68439533 + AT_rich Low_complexity Low_complexity 1 22 0 1 992 261 206 147 0 chr11 53404816 53404884 -68438972 - ID SINE ID -146 78 1 1 992 676 145 141 30 chr11 53407946 53408081 -68435775 - B1_Mus2 SINE Alu 0 150 1 1 992 2486 159 12 19 chr11 53408589 53408913 -68434943 - MTC LTR MaLR 0 421 99 1 992 1681 16 5 5 chr11 53408913 53409106 -68434750 - B2_Mm1a SINE B2 0 193 1 1 992 2486 159 12 19 chr11 53409106 53409205 -68434651 - MTC LTR MaLR -323 98 1 1 992 716 211 101 63 chr11 53409363 53409570 -68434286 + B3 SINE B2 1 215 -1 1 992 364 135 53 18 chr11 53409604 53409717 -68434139 + CT-rich Low_complexity Low_complexity 1 117 0 1 992 303 293 158 0 chr11 53409719 53409852 -68434004 - HAL1-3A_ME LINE L1 -421 2437 2284 1 992 262 79 62 16 chr11 53409853 53409917 -68433939 + CT-rich Low_complexity Low_complexity 2 68 0 1 992 686 242 55 0 chr11 53410092 53410274 -68433582 - B3A SINE B2 -5 193 2 1 992 186 176 57 38 chr11 53410363 53410416 -68433440 + L4 LINE RTE 365 418 -1611 1 992 234 0 0 0 chr11 53410632 53410658 -68433198 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 992 720 200 125 36 chr11 53410665 53410857 -68432999 - B3 SINE B2 -6 210 2 1 992 804 163 13 45 chr11 53410889 53411043 -68432813 + B1_Mur4 SINE Alu 2 150 0 1 992 421 309 27 48 chr11 53411106 53411252 -68432604 + RSINE1 SINE B4 3 145 -20 1 992 1567 90 73 31 chr11 53412473 53412779 -68431077 - L1_Mus1 LINE L1 -6 6632 6299 1 992 533 230 87 0 chr11 53412825 53412951 -68430905 + B1F2 SINE Alu 4 140 -9 1 992 430 242 279 32 chr11 53413526 53413684 -68430172 - B3 SINE B2 -7 209 13 1 992 803 113 8 0 chr11 53415367 53415500 -68428356 + BC1_Mm scRNA scRNA 1 134 -18 1 992 33 66 0 0 chr11 53415540 53415601 -68428255 + AT_rich Low_complexity Low_complexity 1 61 0 1 992 207 0 0 0 chr11 53416073 53416096 -68427760 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 992 574 226 17 9 chr11 53416377 53416493 -68427363 - PB1D7 SINE Alu -2 118 2 1 992 577 256 0 35 chr11 53417279 53417421 -68426435 - ID_B1 SINE B4 -8 216 80 1 992 245 217 71 14 chr11 53417758 53417828 -68426028 - B3 SINE B2 0 216 143 1 992 741 297 15 10 chr11 53418044 53418248 -68425608 - B3 SINE B2 -10 206 2 1 992 389 268 134 0 chr11 53418412 53418554 -68425302 - B4A SINE B4 -84 208 48 1 992 586 337 0 55 chr11 53418602 53418784 -68425072 - B3A SINE B2 0 198 27 1 992 613 198 15 67 chr11 53418782 53418917 -68424939 - ID_B1 SINE B4 -6 218 91 1 992 1362 170 63 142 chr11 53419709 53420154 -68423702 - RMER17C LTR ERVK 0 410 1 1 992 571 133 9 9 chr11 53420227 53420333 -68423523 + CT-rich Low_complexity Low_complexity 1 106 0 1 992 871 144 225 0 chr11 53420335 53420508 -68423348 - B3 SINE B2 -4 212 1 1 992 478 275 130 4 chr11 53420578 53420808 -68423048 - L1MA4A LINE L1 -365 5935 5677 1 992 229 269 26 0 chr11 53420836 53420914 -68422942 - L1M4 LINE L1 -568 5606 5527 1 992 502 290 7 14 chr11 53420942 53421082 -68422774 + B4A SINE B4 1 139 -153 1 992 1252 41 0 0 chr11 53421122 53421269 -68422587 + B1_Mus2 SINE Alu 1 147 0 1 992 229 216 20 0 chr11 53421345 53421396 -68422460 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 992 620 272 65 65 chr11 53421663 53422017 -68421839 - RLTR15 LTR ERVK -3 356 3 1 992 344 270 166 14 chr11 53422096 53422235 -68421621 + RSINE1 SINE B4 5 164 -1 1 992 285 280 13 0 chr11 53422405 53422480 -68421376 + ID4_ SINE ID 2 77 -6 1 992 804 103 0 0 chr11 53422507 53422614 -68421242 - B1_Mur4 SINE Alu 0 150 44 1 992 1091 48 109 0 chr11 53422612 53422759 -68421097 - B2_Mm2 SINE B2 -31 164 2 1 992 1066 195 30 0 chr11 53423774 53423974 -68419882 - B3 SINE B2 -10 206 1 1 992 693 92 0 0 chr11 53424015 53424113 -68419743 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 992 597 230 167 0 chr11 53424130 53424304 -68419552 - B3 SINE B2 -12 204 2 1 992 816 207 0 0 chr11 53424331 53424471 -68419385 - B1_Mur1 SINE Alu -8 141 2 1 992 1764 138 126 3 chr11 53424506 53424839 -68419017 - ORR1D1 LTR MaLR 0 374 1 1 992 468 0 0 0 chr11 53424961 53425013 -68418843 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 992 317 291 34 34 chr11 53425019 53425108 -68418748 - RSINE1 SINE B4 -12 153 65 1 992 302 321 0 27 chr11 53425293 53425405 -68418451 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 992 318 50 0 0 chr11 53425418 53425458 -68418398 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 992 378 0 0 0 chr11 53425458 53425499 -68418357 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 992 947 191 101 20 chr11 53425597 53425795 -68418061 - B3 SINE B2 0 216 3 1 992 41 21 0 0 chr11 53425978 53426026 -68417830 + AT_rich Low_complexity Low_complexity 1 48 0 1 992 363 73 0 0 chr11 53426887 53426942 -68416914 + (CTTG)n Simple_repeat Simple_repeat 2 56 0 1 992 1171 81 0 0 chr11 53426966 53427114 -68416742 - B1_Mus1 SINE Alu 0 148 1 1 992 181 230 88 75 chr11 53427730 53427810 -68416046 - MIR3 SINE MIR -115 93 13 1 992 247 265 22 78 chr11 53427971 53428061 -68415795 - L2c LINE L2 -187 3200 3116 1 992 1016 50 3 0 chr11 53428400 53428541 -68415315 - B1_Mm SINE Alu -1 149 6 1 992 310 176 66 26 chr11 53428635 53428711 -68415145 + ID4 SINE ID 5 83 0 1 992 641 230 104 95 chr11 53428877 53429089 -68414767 + B4 SINE B4 1 213 -79 1 992 651 75 0 0 chr11 53429089 53429183 -68414673 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 992 641 230 104 95 chr11 53429183 53429201 -68414655 + B4 SINE B4 214 232 -60 1 992 251 114 23 0 chr11 53429289 53429333 -68414523 + (CACG)n Simple_repeat Simple_repeat 2 46 0 1 992 263 304 0 0 chr11 53430498 53430590 -68413266 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 992 345 24 0 0 chr11 53431267 53431309 -68412547 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 992 441 0 0 0 chr11 53431565 53431614 -68412242 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 992 26 0 0 0 chr11 53432835 53432861 -68410995 + AT_rich Low_complexity Low_complexity 1 26 0 1 992 509 199 197 7 chr11 53432874 53433011 -68410845 - RSINE1 SINE B4 0 165 3 1 992 719 78 10 0 chr11 53433391 53433494 -68410362 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 1 992 522 269 46 0 chr11 53433515 53433645 -68410211 - B1F SINE Alu -9 140 5 1 992 993 75 13 52 chr11 53433872 53434026 -68409830 + B1_Mus1 SINE Alu 1 148 0 1 992 891 257 33 0 chr11 53434233 53434416 -68409440 - B3 SINE B2 -6 210 22 1 992 194 0 0 37 chr11 53435218 53435245 -68408611 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 1 992 201 359 214 0 chr11 53435282 53435413 -68408443 + MIRb SINE MIR 91 249 -19 1 992 496 225 15 91 chr11 53436316 53436448 -68407408 + RSINE1 SINE B4 44 165 0 1 992 446 267 11 0 chr11 53436451 53436627 -68407229 + (CATA)n Simple_repeat Simple_repeat 2 179 0 1 992 751 221 7 0 chr11 53437695 53437844 -68406012 + B3A SINE B2 1 150 -48 1 992 243 0 0 0 chr11 53437847 53437874 -68405982 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 992 821 141 72 22 chr11 53437920 53438058 -68405798 + B1_Mur2 SINE Alu 5 149 0 1 992 760 206 93 23 chr11 53438184 53438398 -68405458 + B4A SINE B4 2 230 -62 1 992 218 315 153 0 chr11 53438591 53438702 -68405154 + L2 LINE L2 2695 2822 -597 1 992 347 127 0 16 chr11 53439124 53439188 -68404668 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 1 992 777 150 0 0 chr11 53439475 53439655 -68404201 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 992 272 143 63 0 chr11 53439655 53439718 -68404138 + (CAGAGA)n Simple_repeat Simple_repeat 3 69 0 1 992 1155 51 0 0 chr11 53439932 53440069 -68403787 + B1_Mus1 SINE Alu 2 138 -10 1 992 239 71 24 0 chr11 53440069 53440111 -68403745 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 992 507 69 0 0 chr11 53441685 53441757 -68402099 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 992 198 0 0 0 chr11 53441851 53441873 -68401983 + (T)n Simple_repeat Simple_repeat 1 22 0 1 992 813 193 0 28 chr11 53441882 53442026 -68401830 - B1_Mur3 SINE Alu -9 140 1 1 992 869 207 89 45 chr11 53442037 53442239 -68401617 - B3 SINE B2 -4 212 2 1 992 283 357 11 98 chr11 53442265 53442439 -68401417 - B4A SINE B4 -126 166 8 1 992 765 226 150 56 chr11 53442542 53442809 -68401047 + B4 SINE B4 1 292 0 1 992 627 233 0 0 chr11 53442809 53442985 -68400871 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 992 219 257 0 0 chr11 53442999 53443073 -68400783 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 992 748 179 20 20 chr11 53443102 53443250 -68400606 + B1_Mus1 SINE Alu 1 148 0 1 992 202 100 39 20 chr11 53443283 53443334 -68400522 + A-rich Low_complexity Low_complexity 3 54 0 1 992 1052 95 0 7 chr11 53444289 53444438 -68399418 - B1_Mus1 SINE Alu 0 148 1 1 992 290 51 0 0 chr11 53444438 53444477 -68399379 - B2_Mm2 SINE B2 -155 40 2 1 992 182 37 37 0 chr11 53445373 53445400 -68398456 + (TGGGGG)n Simple_repeat Simple_repeat 5 32 0 1 992 981 147 183 0 chr11 53446207 53446398 -68397458 + URR1A DNA MER1_type 1 226 0 1 992 568 269 0 15 chr11 53446420 53446552 -68397304 - B1F SINE Alu -2 147 18 1 992 342 182 0 0 chr11 53448593 53448659 -68395197 + CT-rich Low_complexity Low_complexity 2 67 0 1 992 187 29 0 56 chr11 53450085 53450094 -68393762 + (CACCC)n Simple_repeat Simple_repeat 3 11 0 1 992 722 199 46 0 chr11 53450094 53450225 -68393631 - B1_Mus1 SINE Alu -11 137 1 1 992 187 29 0 56 chr11 53450225 53450251 -68393605 + (CACCC)n Simple_repeat Simple_repeat 2 25 0 1 992 204 154 0 0 chr11 53450412 53450464 -68393392 + (TCTG)n Simple_repeat Simple_repeat 4 55 0 1 992 310 228 65 56 chr11 53451198 53451305 -68392551 + LTR40b LTR ERVL 351 458 -4 1 992 299 185 30 15 chr11 53451312 53451378 -68392478 - PB1D10 SINE Alu -1 116 50 1 992 214 245 20 0 chr11 53451390 53451439 -68392417 + CT-rich Low_complexity Low_complexity 3 52 0 1 992 1145 82 0 0 chr11 53451672 53451819 -68392037 - B1_Mus1 SINE Alu 0 148 2 1 992 1366 79 5 35 chr11 53451863 53452060 -68391796 + B2_Mm1a SINE B2 1 191 -2 1 992 396 0 0 0 chr11 53452095 53452139 -68391717 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 992 628 282 146 47 chr11 53452139 53452193 -68391663 - B4A SINE B4 -11 281 230 1 992 225 0 0 0 chr11 53452193 53452218 -68391638 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 992 779 45 207 0 chr11 53452221 53452332 -68391524 - B1_Mm SINE Alu -13 134 1 1 992 628 282 146 47 chr11 53452332 53452526 -68391330 - B4A SINE B4 -63 229 7 1 992 333 0 0 0 chr11 53452853 53452890 -68390966 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 992 270 207 0 0 chr11 53453054 53453112 -68390744 + CT-rich Low_complexity Low_complexity 2 59 0 1 992 401 249 250 50 chr11 53453172 53453316 -68390540 - HAL1 LINE L1 -1290 1217 1030 1 992 330 26 0 0 chr11 53453316 53453355 -68390501 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 992 401 249 250 50 chr11 53453355 53453474 -68390382 - HAL1 LINE L1 -1478 1029 892 1 992 279 242 16 0 chr11 53453474 53453536 -68390320 - ID4_ SINE ID -19 64 2 1 992 401 249 250 50 chr11 53453536 53453571 -68390285 - HAL1 LINE L1 -1616 891 858 1 992 402 291 114 39 chr11 53453732 53453986 -68389870 - B4A SINE B4 -15 277 5 1 992 418 225 6 51 chr11 53454025 53454183 -68389673 - PB1D9 SINE Alu 0 149 3 1 992 210 158 0 0 chr11 53454196 53454234 -68389622 + T-rich Low_complexity Low_complexity 1 38 0 1 992 283 279 63 0 chr11 53454283 53454362 -68389494 + PB1D7 SINE Alu 1 84 -36 1 992 481 286 132 118 chr11 53454374 53454663 -68389193 - RMER13A LTR ERVK 0 860 568 1 992 270 0 0 0 chr11 53454677 53454707 -68389149 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 1 992 430 321 24 0 chr11 53454878 53455043 -68388813 - L1MB3 LINE L1 -227 5956 5788 1 992 640 297 39 0 chr11 53455140 53455322 -68388534 - B3A SINE B2 -9 189 1 1 992 306 227 44 149 chr11 53455347 53455461 -68388395 + B3A SINE B2 97 198 0 1 992 783 105 0 0 chr11 53455570 53455694 -68388162 + (TG)n Simple_repeat Simple_repeat 2 125 0 1 992 298 195 26 0 chr11 53455696 53455773 -68388083 + GA-rich Low_complexity Low_complexity 1 79 0 1 992 989 190 17 6 chr11 53455814 53455994 -68387862 - B3 SINE B2 -34 182 1 1 992 642 269 0 0 chr11 53456064 53456209 -68387647 - ID_B1 SINE B4 0 224 80 1 992 799 227 77 63 chr11 53456294 53456501 -68387355 + B3 SINE B2 1 210 -6 1 992 198 0 0 0 chr11 53457005 53457027 -68386829 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 992 447 173 297 36 chr11 53457057 53457195 -68386661 + B3 SINE B2 1 174 -42 1 992 286 266 81 18 chr11 53457256 53457367 -68386489 - L1M4 LINE L1 -2532 3614 3497 1 992 760 279 46 31 chr11 53457376 53457619 -68386237 - ID_B1 SINE B4 -44 248 2 1 992 543 245 82 0 chr11 53457803 53457950 -68385906 - RSINE1 SINE B4 -4 161 3 1 992 270 353 65 6 chr11 53458163 53458331 -68385525 - L2 LINE L2 -610 2809 2632 1 992 1149 75 7 0 chr11 53458340 53458487 -68385369 + B1_Mus1 SINE Alu 1 148 0 1 992 517 303 7 19 chr11 53458523 53458678 -68385178 - RSINE1 SINE B4 -10 155 3 1 992 207 301 225 19 chr11 53458678 53458949 -68384907 - L2 LINE L2 -771 2648 2322 1 992 1221 231 117 34 chr11 53460022 53460408 -68383448 + MTD LTR MaLR 1 418 -1 1 992 281 354 94 14 chr11 53460492 53460704 -68383152 - MIRb SINE MIR -23 245 17 1 992 209 330 150 0 chr11 53460665 53460765 -68383091 - L2 LINE L2 -2824 595 481 1 992 364 206 227 0 chr11 53460848 53460945 -68382911 - B1_Mur2 SINE Alu -30 119 1 1 992 307 219 136 48 chr11 53460945 53460982 -68382874 - MT2B2 LTR ERVL -410 174 127 1 992 386 311 58 32 chr11 53461354 53461510 -68382346 - MLT1D LTR MaLR -86 419 260 1 992 458 320 90 14 chr11 53461770 53461992 -68381864 + RCHARR1 DNA MER1_type 101 339 -635 1 992 550 179 305 23 chr11 53462066 53462243 -68381613 + ORR1D1 LTR MaLR 148 374 0 1 992 341 180 175 26 chr11 53462243 53462347 -68381509 + RCHARR1 DNA MER1_type 427 547 -427 1 992 440 299 160 0 chr11 53462347 53462491 -68381365 + ID_B1 SINE B4 1 167 -57 1 992 220 207 111 89 chr11 53462437 53462497 -68381359 + PB1D10 SINE Alu 25 88 -29 1 992 1428 55 71 0 chr11 53462497 53462679 -68381177 - B2_Mm2 SINE B2 0 195 1 1 992 220 207 111 89 chr11 53462679 53462708 -68381148 + PB1D10 SINE Alu 89 116 -1 1 992 317 203 40 0 chr11 53462700 53462774 -68381082 + RCHARR1 DNA MER1_type 531 607 -367 1 992 357 179 30 0 chr11 53462793 53462860 -68380996 - PB1D9 SINE Alu 0 120 52 1 992 901 202 98 26 chr11 53462876 53463140 -68380716 + RCHARR1 DNA MER1_type 621 903 -71 1 992 587 144 171 0 chr11 53465191 53465302 -68378554 - B3 SINE B2 -86 130 1 1 992 984 97 14 14 chr11 53465317 53465464 -68378392 - B1_Mus1 SINE Alu 0 148 2 1 992 578 215 30 61 chr11 53465537 53465684 -68378172 - B1_Mus2 SINE Alu -5 144 1 1 992 320 229 105 79 chr11 53465889 53465919 -68377937 + MT2B LTR ERVL 125 157 -444 1 992 544 216 21 0 chr11 53465919 53466016 -68377840 + PB1D9 SINE Alu 1 99 -21 1 992 469 293 17 17 chr11 53466231 53466349 -68377507 - B1_Mur1 SINE Alu -30 119 2 1 992 625 245 144 0 chr11 53467629 53467817 -68376039 - ID_B1 SINE B4 -1 223 9 1 992 851 148 92 43 chr11 53467985 53468169 -68375687 - B2_Mm2 SINE B2 -2 193 1 1 992 1391 75 11 0 chr11 53469254 53469441 -68374415 - B2_Mm1a SINE B2 -4 189 1 1 992 217 244 279 125 chr11 53469597 53469613 -68374243 + B4 SINE B4 67 103 -189 1 992 463 144 281 83 chr11 53469613 53469734 -68374122 + B1_Mm SINE Alu 2 146 -1 1 992 549 190 163 16 chr11 53469948 53470071 -68373785 - B1_Mm SINE Alu 0 147 7 1 992 384 242 123 69 chr11 53469950 53470129 -68373727 - ID_B1 SINE B4 -68 224 43 1 992 319 261 113 60 chr11 53469995 53470146 -68373710 - MT2B2 LTR ERVL -345 239 81 1 992 371 279 104 69 chr11 53472000 53472173 -68371683 + B4A SINE B4 86 264 -28 1 992 1406 65 27 5 chr11 53472211 53472398 -68371458 + B2_Mm2 SINE B2 1 191 -4 1 992 1540 47 5 20 chr11 53472402 53472597 -68371259 + B2_Mm1a SINE B2 2 193 0 1 992 857 172 0 20 chr11 53472911 53473059 -68370797 + B1_Mm SINE Alu 2 146 -1 1 992 300 206 58 14 chr11 53473079 53473148 -68370708 + L1M5 LINE L1 5584 5655 -469 1 992 574 168 45 36 chr11 53473352 53473463 -68370393 + B1_Mur4 SINE Alu 39 150 0 1 992 257 327 0 19 chr11 53474277 53474380 -68369476 + Tigger12A DNA MER2_type 604 704 -87 1 992 381 293 17 25 chr11 53474614 53474733 -68369123 + L1MC1 LINE L1 6216 6333 0 1 992 1315 92 49 0 chr11 53474741 53474926 -68368930 + B2_Mm2 SINE B2 1 194 -1 1 992 221 180 20 0 chr11 53475694 53475744 -68368112 + A-rich Low_complexity Low_complexity 5 55 0 1 992 550 284 104 35 chr11 53475773 53475974 -68367882 - B3A SINE B2 -1 215 1 1 993 183 309 174 39 chr11 53477531 53477686 -68366170 + L2 LINE L2 2387 2562 -857 1 993 533 95 92 31 chr11 53477926 53478024 -68365832 + B1_Mus1 SINE Alu 44 147 -1 1 993 231 121 0 79 chr11 53478026 53478089 -68365767 + A-rich Low_complexity Low_complexity 3 60 0 1 993 1766 267 107 39 chr11 53478111 53479027 -68364829 + L1M2 LINE L1 4303 5280 -863 1 993 894 146 7 0 chr11 53479046 53479183 -68364673 + B1_Mus2 SINE Alu 9 146 -1 1 993 3519 133 145 3 chr11 53479210 53479804 -68364052 - RLTR33 LTR ERVK 0 678 1 1 993 515 249 143 15 chr11 53479925 53480121 -68363735 + L1M2 LINE L1 5316 5536 -761 1 993 411 298 33 13 chr11 53480180 53480333 -68363523 + RSINE1 SINE B4 5 160 -5 1 993 694 236 0 63 chr11 53480478 53480636 -68363220 + B1_Mur1 SINE Alu 2 149 0 1 993 724 163 43 5 chr11 53480783 53480905 -68362951 - B1_Mus2 SINE Alu -8 139 11 1 993 1378 90 37 0 chr11 53480915 53481103 -68362753 - B2_Mm2 SINE B2 0 195 1 1 993 25 31 0 0 chr11 53481115 53481147 -68362709 + AT_rich Low_complexity Low_complexity 1 32 0 1 993 367 264 7 15 chr11 53481182 53481281 -68362575 - B1F SINE Alu -20 100 1 1 993 299 163 0 0 chr11 53482463 53482506 -68361350 + PB1D9 SINE Alu 1 43 -77 1 993 22 0 0 0 chr11 53482559 53482581 -68361275 + AT_rich Low_complexity Low_complexity 1 22 0 1 993 893 208 28 28 chr11 53482590 53482803 -68361053 + B3 SINE B2 4 216 0 1 993 496 171 0 0 chr11 53482869 53482945 -68360911 - B3 SINE B2 -140 76 1 1 993 681 170 93 29 chr11 53483787 53483926 -68359930 + B1_Mur3 SINE Alu 1 148 -1 1 993 509 207 54 0 chr11 53484279 53484390 -68359466 + PB1D10 SINE Alu 1 117 0 1 993 675 0 0 0 chr11 53484421 53484496 -68359360 + (TCCC)n Simple_repeat Simple_repeat 1 75 0 1 993 927 0 0 0 chr11 53484496 53484599 -68359257 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 1 993 488 67 0 0 chr11 53484601 53484661 -68359195 - B1_Mus1 SINE Alu -67 81 22 1 993 1077 174 0 0 chr11 53485688 53485855 -68358001 - MTC LTR MaLR -53 368 202 1 993 180 97 0 0 chr11 53485858 53485889 -68357967 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 993 537 167 167 0 chr11 53485894 53486026 -68357830 - Lx4B LINE L1 -10 7048 6895 1 993 412 319 41 35 chr11 53486113 53486282 -68357574 - Ricksha_c DNA MuDR -1160 888 719 1 993 550 243 6 100 chr11 53486307 53486467 -68357389 - ID_B1 SINE B4 -78 146 2 1 993 248 164 127 0 chr11 53486467 53486515 -68357341 - MLT2B3 LTR ERVL -267 287 233 1 993 585 284 26 0 chr11 53486515 53486658 -68357198 + B3A SINE B2 2 156 -37 1 993 258 32 0 0 chr11 53486658 53486689 -68357167 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 993 315 323 132 12 chr11 53486689 53486711 -68357145 + B2_Mm1a SINE B2 157 186 -7 1 993 606 221 61 0 chr11 53486869 53487000 -68356856 + ID_B1 SINE B4 84 222 -2 1 993 660 158 181 0 chr11 53487172 53487299 -68356557 + B1_Mur4 SINE Alu 1 150 0 1 993 541 146 218 0 chr11 53487412 53487522 -68356334 - B1_Mus1 SINE Alu 0 148 15 1 993 505 167 10 62 chr11 53487934 53488030 -68355826 - PB1D9 SINE Alu -29 91 1 1 993 204 162 72 14 chr11 53488316 53488385 -68355471 + (TAAA)n Simple_repeat Simple_repeat 2 74 0 1 993 488 270 28 28 chr11 53488562 53488703 -68355153 + B1F1 SINE Alu 1 141 -8 1 993 417 161 62 31 chr11 53488703 53488799 -68355057 + B1_Mur4 SINE Alu 45 143 -7 1 993 288 337 0 12 chr11 53488806 53488890 -68354966 + B4A SINE B4 13 95 -197 1 993 462 125 9 55 chr11 53488892 53488992 -68354864 + L1Md_F2 LINE L1 6478 6573 -9 1 993 826 102 17 0 chr11 53488992 53489110 -68354746 + PB1D9 SINE Alu 1 120 0 1 993 462 125 9 55 chr11 53489110 53489147 -68354709 + L1Md_F2 LINE L1 6574 6582 0 1 993 197 33 0 32 chr11 53489156 53489187 -68354669 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 993 402 314 83 36 chr11 53489188 53489365 -68354491 + B4A SINE B4 84 262 -30 1 993 273 292 78 26 chr11 53489616 53489732 -68354124 - MIR SINE MIR -64 198 77 1 993 4338 207 121 18 chr11 53489735 53490723 -68353133 + Lx5 LINE L1 5893 6988 -62 1 993 396 0 0 0 chr11 53490723 53490767 -68353089 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 993 4338 207 121 18 chr11 53490767 53490824 -68353032 + Lx5 LINE L1 6989 7045 -5 1 993 1530 62 5 0 chr11 53491716 53491908 -68351948 + B2_Mm1a SINE B2 1 193 0 1 993 195 42 0 0 chr11 53491930 53491954 -68351902 + (A)n Simple_repeat Simple_repeat 1 24 0 1 993 378 0 0 0 chr11 53493263 53493305 -68350551 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1 993 865 162 0 0 chr11 53493319 53493455 -68350401 - B1_Mur1 SINE Alu -13 136 1 1 993 820 283 59 28 chr11 53493756 53494080 -68349776 - L1MC4a LINE L1 -391 7491 7158 1 993 451 249 156 65 chr11 53494084 53494133 -68349723 + L1MC4a LINE L1 7506 7555 -327 1 993 1286 113 21 5 chr11 53494133 53494320 -68349536 + B2_Mm2 SINE B2 2 191 -4 1 993 451 249 156 65 chr11 53494320 53494609 -68349247 + L1MC4a LINE L1 7556 7875 -7 1 993 234 105 0 0 chr11 53494701 53494739 -68349117 + (T)n Simple_repeat Simple_repeat 1 38 0 1 993 1499 38 44 0 chr11 53494788 53494971 -68348885 - B2_Mm1a SINE B2 -1 192 2 1 993 1238 48 0 0 chr11 53494974 53495121 -68348735 - B1_Mus2 SINE Alu 0 147 1 1 993 1013 218 24 5 chr11 53495253 53495465 -68348391 + B3 SINE B2 1 216 0 1 993 471 56 32 12 chr11 53495900 53495973 -68347883 + B1_Mur4 SINE Alu 46 145 -5 1 993 186 43 0 0 chr11 53495978 53496001 -68347855 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 993 617 270 33 0 chr11 53496151 53496303 -68347553 + RSINE1 SINE B4 2 158 -7 1 993 1100 206 15 5 chr11 53496345 53496550 -68347306 + B3 SINE B2 7 213 -3 1 993 180 318 100 57 chr11 53496745 53496885 -68346971 + L4 LINE RTE 373 518 -1511 1 993 367 347 77 15 chr11 53497095 53497291 -68346565 - MIRb SINE MIR -10 258 51 1 993 713 237 33 38 chr11 53497333 53497517 -68346339 + B3A SINE B2 2 184 -14 1 993 882 268 0 5 chr11 53497857 53498063 -68345793 - B3 SINE B2 -11 205 1 1 993 513 264 25 100 chr11 53498782 53498916 -68344940 - RSINE1 SINE B4 -16 149 27 1 993 995 72 57 14 chr11 53498916 53499057 -68344799 - B1_Mus2 SINE Alu 0 147 1 1 993 513 264 25 100 chr11 53499057 53499082 -68344774 - RSINE1 SINE B4 -139 26 2 1 993 464 261 8 34 chr11 53499218 53499337 -68344519 + PB1D10 SINE Alu 1 116 -1 1 993 284 363 19 10 chr11 53499882 53499985 -68343871 + RSINE1 SINE B4 2 105 -60 1 993 262 287 130 0 chr11 53500000 53500013 -68343843 - B4 SINE B4 -75 217 96 1 993 388 232 42 0 chr11 53500013 53500108 -68343748 - B1_Mur1 SINE Alu -40 109 11 2 993 207 0 0 0 chr11 53500296 53500319 -68343537 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 993 3400 119 79 20 chr11 53500324 53500880 -68342976 + Lx LINE L1 6063 6651 -3 4 993 447 293 120 0 chr11 53500884 53501017 -68342839 - RSINE1 SINE B4 -6 159 11 5 993 730 203 14 7 chr11 53501101 53501240 -68342616 + B1_Mur3 SINE Alu 1 140 -9 6 993 443 267 34 8 chr11 53501294 53501411 -68342445 + PB1 SINE Alu 3 122 -5 7 993 492 253 159 16 chr11 53502121 53502310 -68341546 + B3 SINE B2 1 216 0 8 993 1665 37 0 0 chr11 53502319 53502507 -68341349 - B2_Mm1a SINE B2 -5 188 1 9 993 10967 56 0 1 chr11 53502721 53504069 -68339787 + L1Md_F2 LINE L1 4240 5586 -297 1 993 8319 37 9 1 chr11 53504069 53505057 -68338799 + L1Md_F2 LINE L1 5587 6582 0 1 993 26 0 0 0 chr11 53506404 53506430 -68337426 + AT_rich Low_complexity Low_complexity 1 26 0 1 993 411 344 58 63 chr11 53506435 53506653 -68337203 - L1MD2 LINE L1 -24 6335 6110 1 993 733 234 65 20 chr11 53506653 53506854 -68337002 - B3 SINE B2 -6 210 1 1 993 411 344 58 63 chr11 53506854 53507082 -68336774 - L1MD2 LINE L1 -250 6109 5891 1 993 281 287 62 47 chr11 53507215 53507343 -68336513 - RMER12 LTR ERVK -92 1230 1101 1 993 4839 117 23 2 chr11 53507504 53508293 -68335563 - RLTR22_Mur LTR ERVK -1043 805 1 1 993 249 151 132 0 chr11 53509170 53509223 -68334633 - U2 snRNA snRNA -128 60 1 1 993 454 330 58 0 chr11 53509226 53509399 -68334457 - B3A SINE B2 -12 186 4 1 993 297 254 0 27 chr11 53509479 53509552 -68334304 - ID4_ SINE ID -11 72 2 1 993 250 312 61 44 chr11 53509563 53509677 -68334179 - B1F SINE Alu 0 149 34 1 993 271 197 0 27 chr11 53509675 53509748 -68334108 + B3 SINE B2 146 216 0 2 993 252 321 71 35 chr11 53510050 53510163 -68333693 + PB1D7 SINE Alu 3 119 -1 2 993 241 225 35 81 chr11 53510347 53510434 -68333422 + PB1 SINE Alu 42 124 -3 2 993 642 152 64 21 chr11 53510781 53510922 -68332934 + B1_Mur3 SINE Alu 2 148 -1 2 993 588 246 30 1 chr11 53511052 53511212 -68332644 + B3 SINE B2 48 216 0 2 993 691 89 54 0 chr11 53511232 53511344 -68332512 + B1_Mus1 SINE Alu 2 119 -29 2 993 226 260 194 8 chr11 53511434 53511558 -68332298 + L1MA8 LINE L1 6066 6212 -79 2 993 683 286 35 0 chr11 53512590 53512789 -68331067 - ID_B1 SINE B4 -17 207 2 2 993 866 287 19 44 chr11 53512864 53513134 -68330722 + B4 SINE B4 26 288 -4 2 993 822 254 142 13 chr11 53513258 53513497 -68330359 - B4A SINE B4 -2 290 21 2 993 372 232 113 0 chr11 53513538 53513680 -68330176 - B3A SINE B2 -39 159 2 3 993 315 250 0 24 chr11 53513858 53513940 -68329916 + B1F SINE Alu 6 85 -64 3 993 370 270 79 14 chr11 53513954 53514093 -68329763 + B1_Mur3 SINE Alu 2 149 0 3 993 216 0 0 0 chr11 53514192 53514216 -68329640 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 993 616 180 239 0 chr11 53514448 53514615 -68329241 + B3 SINE B2 2 208 -8 3 993 1371 128 17 13 chr11 53514688 53514918 -68328938 + 7SK RNA RNA 8 238 -93 3 993 698 181 97 8 chr11 53514960 53515094 -68328762 + B1_Mus1 SINE Alu 2 147 -1 3 993 194 160 0 20 chr11 53515100 53515151 -68328705 + GA-rich Low_complexity Low_complexity 2 51 0 3 993 674 221 7 14 chr11 53515173 53515320 -68328536 + B1F SINE Alu 4 149 0 3 993 25 0 0 0 chr11 53515968 53515993 -68327863 + AT_rich Low_complexity Low_complexity 1 25 0 3 993 21 0 0 0 chr11 53516289 53516310 -68327546 + AT_rich Low_complexity Low_complexity 1 21 0 4 993 221 306 148 20 chr11 53516428 53516678 -68327178 + L2 LINE L2 2539 2820 -599 4 993 1189 62 0 0 chr11 53516678 53516824 -68327032 + B1_Mus2 SINE Alu 2 147 0 4 993 260 45 0 64 chr11 53516824 53516871 -68326985 + (A)n Simple_repeat Simple_repeat 1 44 0 4 993 1429 224 56 18 chr11 53517796 53518187 -68325669 - MTD LTR MaLR 0 419 14 4 993 416 250 36 0 chr11 53518201 53518313 -68325543 - PB1D10 SINE Alu -1 116 1 4 993 440 250 42 0 chr11 53518389 53518485 -68325371 + B1_Mur1 SINE Alu 41 140 -9 4 993 336 48 0 0 chr11 53519050 53519092 -68324764 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 993 244 274 135 16 chr11 53519321 53519447 -68324409 + L1ME4a LINE L1 5980 6120 -4 4 993 22 0 0 0 chr11 53519729 53519751 -68324105 + AT_rich Low_complexity Low_complexity 1 22 0 4 993 315 270 67 11 chr11 53519899 53519989 -68323867 + MurSatRep1 Unknown Unknown 166 260 -1877 5 993 316 195 161 0 chr11 53520979 53521073 -68322783 - PB1D7 SINE Alu -8 112 1 5 993 183 114 0 0 chr11 53521220 53521255 -68322601 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 5 993 1002 159 50 0 chr11 53521448 53521630 -68322226 + B3 SINE B2 2 192 -24 5 993 387 195 50 58 chr11 53521855 53521975 -68321881 + PB1D7 SINE Alu 2 120 0 5 993 1603 209 186 12 chr11 53521989 53522478 -68321378 + Lx9 LINE L1 7058 7631 -13 5 993 632 203 8 0 chr11 53522498 53522616 -68321240 - B1_Mus2 SINE Alu -28 119 1 5 993 270 258 48 0 chr11 53522516 53522640 -68321216 - ORR1B1-int LTR MaLR -762 747 618 5 993 407 211 210 8 chr11 53522657 53522730 -68321126 + B1F1 SINE Alu 1 77 -72 5 993 2854 82 44 103 chr11 53522730 53523235 -68320621 + IAPLTR2_Mm LTR ERVK 1 475 0 5 993 407 211 210 8 chr11 53523235 53523285 -68320571 + B1F1 SINE Alu 78 149 0 6 993 321 269 118 46 chr11 53523285 53523305 -68320551 + B4A SINE B4 172 244 -48 6 993 1308 88 5 16 chr11 53523406 53523591 -68320265 + B2_Mm1a SINE B2 2 184 -9 6 993 201 74 0 0 chr11 53524265 53524292 -68319564 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 993 715 70 0 0 chr11 53524292 53524392 -68319464 - B1_Mus1 SINE Alu -22 126 27 6 993 348 24 0 0 chr11 53524466 53524507 -68319349 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 993 454 225 102 61 chr11 53524948 53525067 -68318789 + ID_B1 SINE B4 72 200 -24 6 993 2385 84 129 13 chr11 53525067 53525439 -68318417 - RLTR9F LTR ERVK 0 415 1 6 993 454 225 102 61 chr11 53525439 53525466 -68318390 + ID_B1 SINE B4 201 224 0 6 993 1561 48 21 0 chr11 53525548 53525737 -68318119 + B2_Mm1a SINE B2 1 193 0 6 993 1184 75 0 0 chr11 53525750 53525897 -68317959 + B1_Mus2 SINE Alu 1 147 0 6 993 333 0 0 0 chr11 53525936 53525973 -68317883 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 993 288 302 56 9 chr11 53526172 53526279 -68317577 + PB1D10 SINE Alu 3 114 -3 7 993 532 245 1 3 chr11 53526300 53526417 -68317439 + B1F1 SINE Alu 19 134 -16 7 993 1470 174 9 59 chr11 53526519 53526842 -68317014 + RMER1C Other Other 1036 1342 0 7 993 21 36 0 0 chr11 53527133 53527161 -68316695 + AT_rich Low_complexity Low_complexity 1 28 0 7 993 635 203 13 92 chr11 53527632 53527784 -68316072 + B1_Mur2 SINE Alu 3 142 -7 7 993 225 0 0 0 chr11 53527805 53527830 -68316026 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 7 993 407 283 115 0 chr11 53527831 53527944 -68315912 - ID_B1 SINE B4 -14 210 85 7 993 180 0 0 0 chr11 53528013 53528033 -68315823 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 993 645 188 0 63 chr11 53528148 53528290 -68315566 - B1_Mur2 SINE Alu -10 139 7 7 993 609 271 68 32 chr11 53528325 53528577 -68315279 - L1MC3 LINE L1 -267 7518 7258 8 993 572 253 25 51 chr11 53528736 53528894 -68314962 + RSINE1 SINE B4 12 165 0 8 993 222 318 0 0 chr11 53528901 53528964 -68314892 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 993 253 291 80 23 chr11 53529092 53529180 -68314676 + PB1D7 SINE Alu 20 112 -8 8 993 520 197 125 8 chr11 53529206 53529334 -68314522 + ID_B1 SINE B4 82 224 0 8 993 562 284 73 5 chr11 53529340 53529545 -68314311 + L1MB3 LINE L1 5685 5903 -280 8 993 466 231 83 0 chr11 53529781 53529902 -68313954 + ID_B1 SINE B4 92 222 -2 8 993 452 273 125 7 chr11 53531253 53531397 -68312459 - ID_B1 SINE B4 -5 219 59 8 993 1113 143 4 84 chr11 53531417 53531654 -68312202 - RMER1A Other Other -12 1018 801 8 993 1222 61 0 0 chr11 53531756 53531903 -68311953 + B1_Mus1 SINE Alu 2 148 0 8 993 21 0 0 0 chr11 53531903 53531924 -68311932 + AT_rich Low_complexity Low_complexity 1 21 0 9 993 2106 276 82 38 chr11 53532069 53532731 -68311125 - Lx8 LINE L1 -232 7241 6533 9 993 1413 70 11 21 chr11 53532731 53532921 -68310935 - B2_Mm1t SINE B2 -4 189 2 9 993 2106 276 82 38 chr11 53532921 53533056 -68310800 - Lx8 LINE L1 -941 6532 6409 9 993 317 259 26 61 chr11 53533104 53533219 -68310637 + PB1D10 SINE Alu 1 111 -6 9 993 285 328 60 67 chr11 53533656 53533790 -68310066 - ID_B1 SINE B4 -9 215 83 9 993 484 271 49 21 chr11 53534504 53534647 -68309209 - B1F2 SINE Alu -1 148 2 9 993 676 156 16 0 chr11 53534684 53534806 -68309050 + B1_Mur2 SINE Alu 21 144 -5 9 993 291 209 10 50 chr11 53534975 53535176 -68308680 + RMER17C LTR ERVK 83 275 -135 9 993 367 227 70 1 chr11 53535445 53535536 -68308320 - PB1 SINE Alu -47 102 2 9 993 282 231 76 13 chr11 53535636 53535715 -68308141 + PB1D10 SINE Alu 12 95 -54 9 993 588 243 96 11 chr11 53535766 53535953 -68307903 + ID_B1 SINE B4 2 204 -20 1 993 298 279 20 2 chr11 53536131 53536230 -68307626 - BC1_Mm scRNA scRNA -53 99 2 1 993 235 174 0 0 chr11 53536283 53536329 -68307527 - B3 SINE B2 -6 210 165 1 993 438 139 0 0 chr11 53536331 53536403 -68307453 + (TATG)n Simple_repeat Simple_repeat 1 72 0 1 993 634 210 108 67 chr11 53536403 53536597 -68307259 - B3 SINE B2 -13 203 2 1 993 607 131 0 0 chr11 53536833 53536932 -68306924 - B3 SINE B2 -117 99 1 1 993 621 247 27 0 chr11 53536951 53537097 -68306759 - ID_B1 SINE B4 -5 219 70 1 993 244 260 27 0 chr11 53537097 53537170 -68306686 - L1MA6 LINE L1 -5 6286 6212 1 993 878 219 75 0 chr11 53537713 53537900 -68305956 - ID_B1 SINE B4 -23 201 1 1 993 384 211 0 0 chr11 53537918 53537989 -68305867 - ID_B1 SINE B4 -16 208 138 1 993 452 294 101 49 chr11 53538025 53538272 -68305584 - L1MA6 LINE L1 -155 6145 5886 1 993 309 89 0 0 chr11 53538825 53538870 -68304986 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 1 993 1079 227 5 5 chr11 53538870 53539091 -68304765 + B4 SINE B4 9 229 -63 1 993 1176 51 0 0 chr11 53539091 53539229 -68304627 + B1_Mus2 SINE Alu 1 138 -9 1 993 252 0 0 0 chr11 53539229 53539257 -68304599 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 993 894 274 7 66 chr11 53539284 53539585 -68304271 - B4A SINE B4 -2 290 8 1 993 1015 84 39 0 chr11 53539818 53539972 -68303884 - B2_Mm2 SINE B2 0 195 36 1 993 2733 254 79 40 chr11 53540005 53540893 -68302963 - Lx8 LINE L1 -6 7467 6546 1 993 333 172 0 2 chr11 53540925 53540992 -68302864 - B1_Mus1 SINE Alu -51 66 1 1 993 412 275 100 0 chr11 53541091 53541211 -68302645 - B1F SINE Alu -5 144 13 1 993 243 0 0 0 chr11 53541267 53541294 -68302562 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 993 351 0 0 0 chr11 53541309 53541348 -68302508 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 993 450 131 190 10 chr11 53541385 53541485 -68302371 + RLTR40 LTR ERVK 1 118 -699 1 993 521 106 59 0 chr11 53541497 53541582 -68302274 + B1_Mm SINE Alu 48 137 -10 1 993 755 230 98 20 chr11 53541678 53541882 -68301974 - ID_B1 SINE B4 0 224 5 1 993 382 244 175 8 chr11 53541896 53542030 -68301826 - B3A SINE B2 -29 187 34 1 993 442 264 59 26 chr11 53541993 53542031 -68301825 + B4 SINE B4 48 90 -202 1 993 832 70 0 9 chr11 53542031 53542146 -68301710 + B1_Mm SINE Alu 1 114 -33 1 993 671 246 107 47 chr11 53542219 53542517 -68301339 - L1MD3 LINE L1 -159 6174 5859 1 993 338 241 9 3 chr11 53542519 53542604 -68301252 - PB1D10 SINE Alu -22 127 41 1 993 231 237 5 0 chr11 53542631 53542686 -68301170 - ID2 SINE ID -21 62 6 1 993 576 188 7 14 chr11 53542690 53542830 -68301026 + CT-rich Low_complexity Low_complexity 1 139 0 1 993 622 259 0 179 chr11 53542852 53543120 -68300736 - B4A SINE B4 -2 290 71 1 993 824 265 132 11 chr11 53543163 53543559 -68300297 - L1MD3 LINE L1 -2170 5825 5381 1 993 884 122 13 45 chr11 53543633 53543788 -68300068 + B1_Mur4 SINE Alu 1 150 0 1 993 224 342 0 38 chr11 53543812 53543891 -68299965 + RSINE1 SINE B4 16 91 -74 1 993 560 272 71 22 chr11 53543955 53544139 -68299717 - MTE2a LTR MaLR 0 379 187 1 993 1365 327 66 8 chr11 53544197 53544848 -68299008 + Lx8 LINE L1 6779 7467 -6 1 993 273 196 36 0 chr11 53545050 53545106 -68298750 - MTE2a LTR MaLR -321 58 1 1 993 622 269 50 0 chr11 53545376 53545517 -68298339 + RSINE1 SINE B4 3 150 -15 1 993 867 242 90 74 chr11 53545796 53546203 -68297653 + L1M5 LINE L1 5257 5669 -571 1 993 365 286 82 67 chr11 53546267 53546402 -68297454 - ID_B1 SINE B4 -7 217 81 1 993 1174 176 45 0 chr11 53546421 53546620 -68297236 - B3 SINE B2 -7 209 2 1 993 1216 110 15 45 chr11 53547445 53547607 -68296249 + B2_Mm2 SINE B2 1 161 -34 1 993 315 0 0 0 chr11 53547607 53547642 -68296214 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1 993 1216 110 15 45 chr11 53547642 53547661 -68296195 + B2_Mm2 SINE B2 162 175 -20 1 993 1162 61 0 7 chr11 53547661 53547810 -68296046 + B1_Mus1 SINE Alu 1 148 0 1 993 1216 110 15 45 chr11 53547810 53547827 -68296029 + B2_Mm2 SINE B2 176 194 -1 1 993 866 205 107 10 chr11 53548018 53548215 -68295641 + B3 SINE B2 1 216 0 1 993 22 0 0 0 chr11 53548252 53548274 -68295582 + AT_rich Low_complexity Low_complexity 1 22 0 1 993 362 219 222 6 chr11 53548336 53548492 -68295364 + ID_B1 SINE B4 1 190 -34 1 993 857 158 14 41 chr11 53549712 53549857 -68293999 - B1_Mus2 SINE Alu -6 141 1 1 993 216 86 0 0 chr11 53549860 53549895 -68293961 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 993 1201 28 0 0 chr11 53549897 53550038 -68293818 - B1_Mm SINE Alu -6 141 1 1 993 710 189 30 0 chr11 53550064 53550196 -68293660 + B1_Mus1 SINE Alu 2 137 -11 1 993 296 48 0 23 chr11 53550196 53550239 -68293617 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 993 204 254 0 0 chr11 53550244 53550303 -68293553 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 993 574 221 76 0 chr11 53550308 53550439 -68293417 - B3A SINE B2 -22 176 36 1 993 228 259 78 71 chr11 53550459 53550600 -68293256 - B1F1 SINE Alu -7 142 1 1 993 550 224 8 8 chr11 53551016 53551133 -68292723 + B1_Mur1 SINE Alu 32 148 -1 1 993 350 42 0 20 chr11 53551392 53551441 -68292415 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 993 974 98 8 0 chr11 53551619 53551751 -68292105 + B1_Mus2 SINE Alu 1 133 -14 1 993 275 49 0 24 chr11 53551751 53551793 -68292063 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1 993 488 280 177 0 chr11 53551865 53552040 -68291816 + B4A SINE B4 2 207 -85 1 993 428 274 39 79 chr11 53552040 53552218 -68291638 - RLTR9E LTR ERVK -3 406 236 1 993 1223 54 0 0 chr11 53552441 53552588 -68291268 + B1_Mus2 SINE Alu 1 147 0 1 993 257 244 12 82 chr11 53552603 53552688 -68291168 - IAP-d-int LTR ERVK -87 6455 6377 1 993 855 308 47 13 chr11 53552805 53553187 -68290669 - RLTR6-int LTR ERV1 -107 7671 7277 1 993 1002 149 64 10 chr11 53553252 53553455 -68290401 - RMER16-int LTR ERVK -1706 3700 3487 1 993 10995 126 28 18 chr11 53553426 53554610 -68289246 - RMER16-int LTR ERVK -2115 3291 2092 1 993 369 0 0 0 chr11 53554610 53554651 -68289205 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 993 1107 52 0 22 chr11 53554652 53554791 -68289065 - B1_Mus1 SINE Alu -12 136 1 1 993 10995 133 27 17 chr11 53554791 53555334 -68288522 - RMER16-int LTR ERVK -3315 2091 1566 1 993 252 314 42 14 chr11 53555370 53555512 -68288344 - RMER16-int LTR ERVK -3812 2355 2210 1 993 639 65 157 0 chr11 53555514 53555622 -68288234 - B1_Mus1 SINE Alu 0 148 24 1 993 339 195 0 35 chr11 53555548 53555633 -68288223 - MT2B LTR ERVL -344 257 176 1 993 896 317 8 36 chr11 53555651 53556008 -68287848 - RMER16-int LTR ERVK -3965 2202 1856 1 993 559 254 0 0 chr11 53556091 53556213 -68287643 - RMER16-int LTR ERVK -1738 1576 1455 1 993 3812 180 20 12 chr11 53556264 53557077 -68286779 - RMER16-int LTR ERVK -3811 1595 860 1 993 1543 130 71 68 chr11 53557080 53557456 -68286400 - RMER16-int LTR ERVK -4736 670 192 1 993 4664 125 32 4 chr11 53557815 53558560 -68285296 + RMER17B LTR ERVK 1 766 -192 1 993 287 345 109 0 chr11 53558585 53558695 -68285161 + RSINE1 SINE B4 3 124 -41 1 993 342 45 0 0 chr11 53558695 53558739 -68285117 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 993 890 166 7 0 chr11 53558760 53558905 -68284951 - B1_Mus1 SINE Alu 0 148 3 1 993 814 199 37 21 chr11 53558908 53559098 -68284758 - B2_Mm2 SINE B2 -1 194 2 1 993 30 0 0 0 chr11 53559105 53559135 -68284721 + AT_rich Low_complexity Low_complexity 1 30 0 1 993 495 48 0 0 chr11 53559199 53559261 -68284595 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 993 472 211 92 15 chr11 53559272 53559402 -68284454 + B1_Mur3 SINE Alu 2 141 -8 1 993 1004 103 0 0 chr11 53559426 53559572 -68284284 + B1_Mus1 SINE Alu 3 148 0 1 993 364 284 23 109 chr11 53559720 53559894 -68283962 - L1MEf LINE L1 -4151 2049 1891 1 993 4569 195 73 21 chr11 53559897 53560782 -68283074 + Lx9 LINE L1 6476 7416 -228 1 993 1046 102 40 60 chr11 53560782 53560981 -68282875 + B2_Mm2 SINE B2 1 195 0 1 993 4569 195 73 21 chr11 53560981 53561185 -68282671 + Lx9 LINE L1 7417 7622 -22 1 993 243 0 0 0 chr11 53561189 53561216 -68282640 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 1 993 582 209 0 115 chr11 53561250 53561407 -68282449 + B1_Mur1 SINE Alu 9 147 -2 1 993 339 265 107 33 chr11 53561717 53561838 -68282018 - L1MA4A LINE L1 -382 5921 5783 1 993 791 125 0 0 chr11 53561848 53561968 -68281888 - B1_Mur3 SINE Alu -1 148 29 1 993 599 218 16 24 chr11 53562002 53562129 -68281727 + B1F SINE Alu 2 127 -22 1 993 558 268 112 30 chr11 53562147 53562443 -68281413 - L1MA4A LINE L1 -497 5794 5475 1 993 458 237 0 18 chr11 53562489 53562600 -68281256 - PB1D7 SINE Alu -8 112 5 1 993 233 293 11 58 chr11 53562735 53562822 -68281034 - ID4 SINE ID 0 83 1 1 993 252 0 0 0 chr11 53562888 53562916 -68280940 + (A)n Simple_repeat Simple_repeat 1 28 0 1 993 2774 84 32 5 chr11 53563100 53563507 -68280349 - RLTR9B LTR ERVK -19 418 1 1 993 736 200 7 33 chr11 53563524 53563674 -68280182 - B1_Mus1 SINE Alu -2 146 1 1 993 481 273 66 0 chr11 53563699 53563820 -68280036 + RSINE1 SINE B4 29 157 -8 1 993 354 107 0 0 chr11 53563877 53563933 -68279923 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 993 538 246 0 45 chr11 53564039 53564171 -68279685 - ID_B1 SINE B4 -1 223 98 1 993 235 146 36 0 chr11 53564330 53564385 -68279471 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 993 262 221 276 7 chr11 53564385 53564487 -68279369 - PB1D9 SINE Alu -27 120 13 1 993 590 268 14 7 chr11 53564514 53564657 -68279199 - ID_B1 SINE B4 -1 223 80 1 993 267 248 2 27 chr11 53564657 53564743 -68279113 - L1M4 LINE L1 -862 5284 5200 1 993 981 88 0 0 chr11 53564918 53565055 -68278801 + (TTC)n Simple_repeat Simple_repeat 3 139 0 1 993 1009 90 64 29 chr11 53565055 53565226 -68278630 - B2_Mm1t SINE B2 -16 177 1 1 993 667 227 56 51 chr11 53565257 53565430 -68278426 + B3A SINE B2 3 183 -15 1 993 303 122 0 0 chr11 53565430 53565479 -68278377 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 993 667 227 56 51 chr11 53565479 53565500 -68278356 + B3A SINE B2 184 198 0 1 993 644 213 175 4 chr11 53565590 53565780 -68278076 - B3A SINE B2 -1 215 6 2 993 565 250 14 35 chr11 53565830 53565975 -68277881 - RSINE1 SINE B4 -11 154 13 2 993 225 213 64 0 chr11 53565995 53566042 -68277814 - PB1 SINE Alu -3 124 75 2 993 843 275 11 0 chr11 53566000 53566182 -68277674 - ID_B1 SINE B4 -9 215 32 2 993 580 215 7 78 chr11 53566201 53566261 -68277595 - ID_B1 SINE B4 0 224 165 2 993 4338 94 114 9 chr11 53566261 53566928 -68276928 + RMER19A LTR ERVK 1 737 0 2 993 580 215 7 78 chr11 53566928 53567008 -68276848 - ID_B1 SINE B4 -60 164 94 2 993 193 260 20 0 chr11 53567160 53567210 -68276646 + L2a LINE L2 3028 3078 -348 2 993 488 126 0 4 chr11 53567408 53567491 -68276365 + B3 SINE B2 11 91 -104 2 993 1268 173 5 5 chr11 53567492 53567713 -68276143 - URR1A DNA MER1_type 0 226 6 2 993 604 184 9 0 chr11 53567718 53567832 -68276024 + B3 SINE B2 96 210 -6 2 993 754 167 72 0 chr11 53567842 53567980 -68275876 - B1_Mus1 SINE Alu 0 148 1 2 993 763 214 40 15 chr11 53568087 53568285 -68275571 - B3A SINE B2 -1 194 6 2 993 226 0 0 56 chr11 53568293 53568329 -68275527 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 2 993 238 253 0 26 chr11 53568356 53568433 -68275423 - ID_B1 SINE B4 -29 195 121 2 993 426 281 34 20 chr11 53568708 53568857 -68274999 + B4A SINE B4 56 206 -86 2 993 189 0 0 0 chr11 53568964 53568985 -68274871 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 993 1580 31 0 20 chr11 53569023 53569220 -68274636 + B2_Mm1a SINE B2 1 193 0 2 993 1213 34 0 0 chr11 53569554 53569701 -68274155 - B1_Mus2 SINE Alu 0 147 1 2 993 666 266 68 32 chr11 53569701 53569922 -68273934 - B4A SINE B4 -62 230 2 2 993 343 284 37 0 chr11 53569924 53570033 -68273823 - PB1D10 SINE Alu 0 117 5 2 993 267 303 0 0 chr11 53570561 53570637 -68273219 - ID_B1 SINE B4 0 224 149 2 993 1353 66 22 6 chr11 53570646 53570828 -68273028 + B2_Mm2 SINE B2 1 185 -10 2 993 210 143 0 0 chr11 53570846 53570881 -68272975 + (TCC)n Simple_repeat Simple_repeat 1 35 0 2 993 983 129 7 0 chr11 53570881 53571028 -68272828 - B1_Mur4 SINE Alu 0 150 3 2 993 1206 27 0 13 chr11 53571505 53571654 -68272202 + B1_Mm SINE Alu 1 147 0 2 993 410 271 47 0 chr11 53572106 53572235 -68271621 + RSINE1 SINE B4 2 136 -29 2 993 240 297 126 19 chr11 53572405 53572508 -68271348 + MER96 DNA hAT 1 114 -61 2 993 216 271 28 14 chr11 53573928 53573999 -68269857 + G-rich Low_complexity Low_complexity 2 73 0 2 993 330 272 20 20 chr11 53574186 53574389 -68269467 + (TCCA)n Simple_repeat Simple_repeat 1 203 0 2 993 372 241 152 82 chr11 53574593 53574751 -68269105 + B3A SINE B2 14 182 -16 2 993 400 262 18 27 chr11 53575844 53575954 -68267902 + ID_B1 SINE B4 103 211 -13 2 993 401 267 182 37 chr11 53575992 53576179 -68267677 + ID_B1 SINE B4 10 223 -1 2 993 212 261 31 0 chr11 53576867 53576932 -68266924 - MIR SINE MIR -144 118 52 2 993 22 35 0 0 chr11 53577701 53577730 -68266126 + AT_rich Low_complexity Low_complexity 1 29 0 2 993 387 242 74 0 chr11 53577975 53578070 -68265786 - PB1D10 SINE Alu -1 116 15 2 993 331 327 77 29 chr11 53577993 53578163 -68265693 - B4 SINE B4 -109 183 6 2 993 233 298 0 106 chr11 53578615 53578709 -68265147 - ID_B1 SINE B4 -21 203 120 2 993 201 94 0 0 chr11 53578715 53578747 -68265109 + (G)n Simple_repeat Simple_repeat 1 32 0 2 993 319 342 49 37 chr11 53578784 53578948 -68264908 - ID_B1 SINE B4 -54 170 5 2 993 464 0 18 0 chr11 53579278 53579334 -68264522 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 993 956 39 8 0 chr11 53579401 53579528 -68264328 - B1_Mus1 SINE Alu -1 147 20 2 993 438 222 0 0 chr11 53579557 53579638 -68264218 + ID_B1 SINE B4 81 161 -63 2 993 394 257 49 10 chr11 53579558 53579660 -68264196 + PB1D10 SINE Alu 1 106 -11 2 993 279 286 131 83 chr11 53579652 53579797 -68264059 + RSINE1 SINE B4 14 165 0 2 993 1559 42 0 0 chr11 53579847 53580040 -68263816 + B2_Mm1a SINE B2 1 193 0 2 993 646 253 77 0 chr11 53580496 53580678 -68263178 - MER57A-int LTR ERV1 -204 5983 5788 2 993 661 259 12 12 chr11 53580788 53580948 -68262908 - B3A SINE B2 -38 160 1 2 993 472 253 211 16 chr11 53581077 53581262 -68262594 + ID_B1 SINE B4 4 224 0 2 993 627 229 38 0 chr11 53581273 53581404 -68262452 + B1_Mur4 SINE Alu 2 137 -13 2 993 21 0 0 0 chr11 53581458 53581479 -68262377 + AT_rich Low_complexity Low_complexity 1 21 0 2 993 317 279 11 34 chr11 53581484 53581573 -68262283 + ID_B1 SINE B4 83 169 -55 2 993 325 242 68 39 chr11 53581495 53581589 -68262267 + PB1D7 SINE Alu 10 110 -10 2 993 323 0 48 0 chr11 53581589 53581631 -68262225 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 2 993 230 339 8 34 chr11 53581772 53581891 -68261965 + L1M5 LINE L1 5687 5802 -322 2 993 21 71 0 0 chr11 53583319 53583361 -68260495 + GC_rich Low_complexity Low_complexity 1 42 0 2 993 309 51 0 0 chr11 53583601 53583640 -68260216 + (CCGAA)n Simple_repeat Simple_repeat 1 39 0 2 993 349 285 122 20 chr11 53585525 53585656 -68258200 + RSINE1 SINE B4 2 147 -18 2 993 398 20 20 0 chr11 53585656 53585707 -68258149 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 993 349 285 122 20 chr11 53585707 53585722 -68258134 + RSINE1 SINE B4 148 162 -3 2 993 483 151 167 19 chr11 53588046 53588154 -68255702 + B1_Mus2 SINE Alu 5 128 -19 2 993 695 209 29 18 chr11 53591043 53591218 -68252638 - B3 SINE B2 -4 189 4 2 993 595 136 0 19 chr11 53591237 53591342 -68252514 - B1_Mur2 SINE Alu -1 148 46 2 993 596 267 56 71 chr11 53591872 53592138 -68251718 - B4 SINE B4 -24 268 7 2 993 937 93 7 14 chr11 53592283 53592425 -68251431 - B1_Mus1 SINE Alu 0 148 8 2 993 1158 48 7 0 chr11 53593589 53593734 -68250122 + B1_Mus1 SINE Alu 3 148 0 2 993 533 170 118 59 chr11 53594200 53594220 -68249636 - B1_Mur2 SINE Alu -1 148 130 2 993 207 0 0 0 chr11 53594220 53594243 -68249613 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 993 402 21 0 0 chr11 53594243 53594289 -68249567 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 993 533 178 108 61 chr11 53594289 53594397 -68249459 - B1_Mur2 SINE Alu -20 129 10 2 993 262 356 15 29 chr11 53594690 53594826 -68249030 - MIRb SINE MIR -123 145 12 2 993 415 198 75 134 chr11 53595215 53595349 -68248507 + B1_Mur1 SINE Alu 23 148 -1 2 993 1387 40 0 0 chr11 53596194 53596370 -68247486 - B2_Mm1t SINE B2 0 193 18 2 993 1186 41 0 0 chr11 53596411 53596557 -68247299 + B1_Mus2 SINE Alu 2 147 0 2 993 195 42 0 0 chr11 53596557 53596581 -68247275 + (A)n Simple_repeat Simple_repeat 1 24 0 2 993 500 301 104 7 chr11 53596584 53596728 -68247128 + RSINE1 SINE B4 6 163 -2 2 993 414 157 9 18 chr11 53596766 53596876 -68246980 + Lx7 LINE L1 7585 7693 -3 2 993 231 348 48 77 chr11 53597851 53598019 -68245837 + MLT1D LTR MaLR 3 165 -462 2 993 496 243 50 7 chr11 53598062 53598203 -68245653 - RSINE1 SINE B4 0 165 19 2 993 241 254 17 17 chr11 53598249 53598309 -68245547 + B1F SINE Alu 82 141 -8 2 993 183 80 0 0 chr11 53598317 53598342 -68245514 + (T)n Simple_repeat Simple_repeat 1 25 0 2 993 1032 84 0 0 chr11 53598342 53598485 -68245371 - B1_Mus1 SINE Alu 0 148 6 2 993 356 123 74 0 chr11 53598513 53598594 -68245262 - L1Md_F2 LINE L1 -2 6580 6494 2 993 851 164 7 7 chr11 53598623 53598770 -68245086 - B1_Mur2 SINE Alu -1 148 2 2 993 527 336 47 105 chr11 53598773 53598978 -68244878 + MLT1D LTR MaLR 164 343 -162 2 993 393 248 0 66 chr11 53598978 53599099 -68244757 - PB1D10 SINE Alu 0 117 5 2 993 527 336 47 105 chr11 53599099 53599255 -68244601 + MLT1D LTR MaLR 344 504 -1 2 993 197 362 12 24 chr11 53599753 53599835 -68244021 + MIR SINE MIR 76 156 -106 2 993 342 271 236 9 chr11 53599866 53600078 -68243778 + MTD LTR MaLR 139 398 -21 2 993 369 0 0 0 chr11 53600190 53600231 -68243625 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 993 451 239 0 22 chr11 53600463 53600553 -68243303 - PB1D7 SINE Alu -15 105 18 2 993 231 290 0 104 chr11 53600505 53600582 -68243274 - B4A SINE B4 -142 150 82 2 993 1031 49 13 34 chr11 53600605 53600754 -68243102 - B1_Mus1 SINE Alu 0 148 3 2 993 1097 22 65 0 chr11 53601064 53601202 -68242654 - B1_Mm SINE Alu 0 147 1 2 993 301 299 52 0 chr11 53602166 53602263 -68241593 - MIRb SINE MIR -110 158 57 2 993 262 253 99 0 chr11 53602436 53602527 -68241329 + L2b LINE L2 3258 3357 -18 2 993 844 191 174 18 chr11 53602737 53602956 -68240900 + B4 SINE B4 2 254 -38 2 993 532 271 123 28 chr11 53603803 53604079 -68239777 + ORR1E LTR MaLR 46 355 -4 2 993 1490 223 46 108 chr11 53604127 53604674 -68239182 - RLTR11A2 LTR ERVK -14 513 1 2 993 1005 236 19 0 chr11 53604932 53605140 -68238716 - ID_B1 SINE B4 -4 220 9 2 993 326 287 11 75 chr11 53605184 53605278 -68238578 - RSINE1 SINE B4 0 165 78 2 993 932 156 4 0 chr11 53605278 53605531 -68238325 + (TA)n Simple_repeat Simple_repeat 1 254 0 2 993 22 35 0 0 chr11 53605879 53605908 -68237948 + AT_rich Low_complexity Low_complexity 1 29 0 2 993 1192 83 18 0 chr11 53605922 53606091 -68237765 - B2_Mm2 SINE B2 -14 181 10 2 993 341 320 32 8 chr11 53606276 53606399 -68237457 - ID_B1 SINE B4 -2 222 97 2 993 2757 121 101 15 chr11 53606433 53606960 -68236896 + RMER15 LTR ERVL 4 575 0 2 993 515 267 51 15 chr11 53607103 53607240 -68236616 - RSINE1 SINE B4 -21 144 3 3 993 422 233 148 35 chr11 53607263 53607432 -68236424 - B3A SINE B2 -10 188 1 3 993 180 111 0 0 chr11 53607820 53607847 -68236009 + (TATG)n Simple_repeat Simple_repeat 3 29 0 3 993 326 285 187 35 chr11 53607932 53608172 -68235684 + MIRb SINE MIR 4 260 -8 3 994 396 0 0 0 chr11 53609220 53609264 -68234592 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 994 25 0 0 0 chr11 53609272 53609297 -68234559 + AT_rich Low_complexity Low_complexity 1 25 0 3 994 208 259 37 12 chr11 53609866 53609948 -68233908 - L2b LINE L2 -208 3167 3084 3 994 1269 75 0 0 chr11 53612124 53612379 -68231477 + (CCAA)n Simple_repeat Simple_repeat 1 255 0 3 994 1203 275 98 3 chr11 53612584 53612622 -68231234 - MTE2b LTR MaLR 0 370 327 3 994 220 27 26 26 chr11 53612622 53612660 -68231196 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 994 1203 269 102 0 chr11 53612660 53612960 -68230896 - MTE2b LTR MaLR -44 335 4 3 994 271 252 88 53 chr11 53612974 53613087 -68230769 - PB1D7 SINE Alu -1 119 3 3 994 418 312 51 40 chr11 53613314 53613555 -68230301 + LTR48B LTR ERV1 151 590 -197 3 994 233 250 125 0 chr11 53613563 53613635 -68230221 + ID4 SINE ID 1 81 -2 3 994 274 227 27 0 chr11 53614261 53614336 -68229520 - L1M3 LINE L1 -484 5687 5611 3 994 180 0 0 0 chr11 53614340 53614360 -68229496 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 994 1300 192 133 32 chr11 53614382 53614622 -68229234 + ORR1D1 LTR MaLR 1 271 -103 3 994 1465 186 229 30 chr11 53614622 53614994 -68228862 + RLTR41 LTR ERV1 1 446 0 3 994 1300 192 133 32 chr11 53614994 53615092 -68228764 + ORR1D1 LTR MaLR 272 373 -1 3 994 229 296 19 0 chr11 53617043 53617097 -68226759 - MER5B DNA MER1_type -2 176 122 3 994 747 245 109 25 chr11 53617107 53617308 -68226548 + ID_B1 SINE B4 2 219 -5 3 994 593 236 21 57 chr11 53617359 53617552 -68226304 + L1M5 LINE L1 5364 5549 -624 3 994 460 200 0 79 chr11 53617683 53617797 -68226059 + B1_Mur1 SINE Alu 12 116 -33 3 994 821 298 115 38 chr11 53617847 53618186 -68225670 - MTE2b LTR MaLR -5 374 10 3 994 439 263 197 0 chr11 53618577 53618714 -68225142 + B3A SINE B2 1 164 -34 3 994 399 89 0 0 chr11 53618716 53618772 -68225084 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 994 1348 92 16 11 chr11 53618792 53618979 -68224877 + B2_Mm2 SINE B2 3 190 -5 3 994 613 280 21 7 chr11 53619014 53619158 -68224698 - RSINE1 SINE B4 -17 148 3 3 994 1047 79 14 35 chr11 53620513 53620657 -68223199 - B1_Mus2 SINE Alu -5 142 2 3 994 1448 80 16 0 chr11 53620690 53620878 -68222978 - B2_Mm2 SINE B2 -3 192 2 3 994 487 195 214 24 chr11 53620924 53621050 -68222806 - B1_Mur4 SINE Alu 0 150 1 3 994 235 284 122 0 chr11 53621057 53621131 -68222725 - RSINE1 SINE B4 -79 86 4 3 994 435 38 0 0 chr11 53621391 53621444 -68222412 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 994 1380 71 5 37 chr11 53621445 53621636 -68222220 - B2_Mm2 SINE B2 -9 186 2 3 994 183 100 0 0 chr11 53622058 53622088 -68221768 + (C)n Simple_repeat Simple_repeat 1 30 0 3 994 1001 83 0 22 chr11 53622097 53622232 -68221624 - B1_Mus1 SINE Alu -15 133 2 3 994 326 334 62 70 chr11 53623079 53623420 -68220436 - LTR33 LTR ERVL -175 340 3 3 994 1122 174 135 31 chr11 53623424 53623547 -68220309 - RMER17C LTR ERVK 0 410 279 3 994 192 97 0 0 chr11 53623547 53623578 -68220278 + (TATAG)n Simple_repeat Simple_repeat 1 31 0 3 994 1122 180 127 32 chr11 53623578 53623858 -68219998 - RMER17C LTR ERVK -516 442 21 3 994 513 327 19 19 chr11 53623999 53624158 -68219698 + RSINE1 SINE B4 7 165 0 3 994 449 286 12 94 chr11 53624752 53624922 -68218934 - RSINE1 SINE B4 -8 157 2 3 994 674 284 0 0 chr11 53625359 53625500 -68218356 + ID_B1 SINE B4 84 224 0 3 994 439 148 62 0 chr11 53625509 53625590 -68218266 + PB1D9 SINE Alu 27 112 -8 3 994 552 155 41 0 chr11 53625612 53625709 -68218147 + B1_Mus2 SINE Alu 41 141 -6 3 994 690 100 0 0 chr11 53625711 53625811 -68218045 + (GGA)n Simple_repeat Simple_repeat 3 102 0 3 994 189 0 0 0 chr11 53625932 53625953 -68217903 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 994 394 220 294 8 chr11 53625971 53626090 -68217766 - RSINE1 SINE B4 -11 154 2 3 994 353 248 9 87 chr11 53626806 53626921 -68216935 + MLT1A1 LTR MaLR 302 407 -1 3 994 468 314 88 31 chr11 53627456 53627683 -68216173 - L2a LINE L2 -21 3405 3166 3 994 878 295 0 13 chr11 53627684 53627911 -68215945 + ID_B1 SINE B4 1 224 0 3 994 208 162 27 0 chr11 53627911 53627948 -68215908 + GA-rich Low_complexity Low_complexity 4 41 0 3 994 300 294 98 49 chr11 53628130 53628180 -68215676 + L1MEg LINE L1 1790 1848 -4236 3 994 1161 61 0 13 chr11 53628180 53628329 -68215527 + B1_Mus2 SINE Alu 1 147 0 3 994 300 294 98 49 chr11 53628329 53628421 -68215435 + L1MEg LINE L1 1849 1939 -4145 3 994 477 287 222 16 chr11 53628452 53628700 -68215156 - L2a LINE L2 -518 2901 2603 3 994 1152 75 7 0 chr11 53628742 53628888 -68214968 - B1_Mus1 SINE Alu 0 148 2 3 994 2693 65 18 0 chr11 53628948 53629288 -68214568 - L1_Mus1 LINE L1 0 6567 6222 3 994 1077 110 90 12 chr11 53629313 53629479 -68214377 + B2_Mm1t SINE B2 1 179 -14 3 994 259 51 0 132 chr11 53629595 53629663 -68214193 + B2_Mm2 SINE B2 137 195 0 3 994 1115 257 184 11 chr11 53629683 53630037 -68213819 - MTD LTR MaLR 0 419 5 3 994 1217 61 0 0 chr11 53630150 53630297 -68213559 - B1_Mus2 SINE Alu 0 147 1 3 994 204 304 65 11 chr11 53630344 53630437 -68213419 - L2a LINE L2 -1061 2358 2261 3 994 551 234 86 21 chr11 53631418 53631558 -68212298 + B1F2 SINE Alu 1 149 0 3 994 381 311 28 0 chr11 53631600 53631706 -68212150 - PB1D10 SINE Alu -8 109 1 3 994 524 238 9 28 chr11 53631742 53631850 -68212006 + PB1D10 SINE Alu 1 106 -11 3 994 914 246 43 19 chr11 53631854 53632061 -68211795 + B3 SINE B2 1 212 -4 3 994 305 228 183 11 chr11 53634592 53634685 -68209171 + B1F SINE Alu 8 116 -33 3 994 387 0 0 0 chr11 53634736 53634779 -68209077 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 994 210 37 0 0 chr11 53635005 53635032 -68208824 + (CTGGGG)n Simple_repeat Simple_repeat 1 27 0 3 994 298 242 69 175 chr11 53635564 53635855 -68208001 + RMER10A LTR ERVL 169 428 -14 3 994 616 257 56 64 chr11 53636119 53636487 -68207369 - RMER10A LTR ERVL -46 396 2 3 994 318 327 18 18 chr11 53636669 53636778 -68207078 + Charlie4z DNA MER1_type 58 166 -1 3 994 239 244 112 25 chr11 53636817 53636897 -68206959 - B3 SINE B2 0 216 130 3 994 843 290 66 19 chr11 53636886 53637143 -68206713 - B4 SINE B4 -22 270 2 3 994 375 217 159 9 chr11 53637153 53637260 -68206596 - B1F SINE Alu -18 131 9 3 994 441 0 0 0 chr11 53637280 53637329 -68206527 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 994 790 240 69 15 chr11 53638579 53638782 -68205074 + B3 SINE B2 2 215 -1 3 994 1496 50 39 0 chr11 53638804 53638986 -68204870 + B2_Mm2 SINE B2 2 190 -5 3 994 183 241 86 0 chr11 53638992 53639050 -68204806 - MIRm SINE MIR -185 91 29 3 994 748 235 16 32 chr11 53639130 53639315 -68204541 + B3A SINE B2 1 182 -16 3 994 442 301 29 10 chr11 53639385 53639489 -68204367 + PB1D10 SINE Alu 9 114 -3 3 994 4257 121 66 20 chr11 53639849 53640560 -68203296 - RMER6A LTR ERVK -12 744 1 3 994 296 266 147 133 chr11 53641112 53641398 -68202458 + LTR16B1 LTR ERVL 179 468 -12 3 994 476 272 21 56 chr11 53641410 53641554 -68202302 + RSINE1 SINE B4 2 140 -25 3 994 23 0 0 0 chr11 53641555 53641578 -68202278 + AT_rich Low_complexity Low_complexity 1 23 0 3 994 1197 68 0 0 chr11 53641807 53641955 -68201901 - B1_Mus1 SINE Alu 0 148 1 3 994 695 168 0 0 chr11 53642430 53642537 -68201319 + PB1D9 SINE Alu 2 108 -12 3 994 303 28 0 0 chr11 53642541 53642577 -68201279 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 994 694 302 20 48 chr11 53642585 53642835 -68201021 + B4A SINE B4 1 243 -49 3 994 490 168 98 45 chr11 53643058 53643170 -68200686 + PB1D7 SINE Alu 1 118 -2 3 994 1831 159 45 48 chr11 53643201 53643578 -68200278 + ORR1C2 LTR MaLR 3 378 -6 3 994 824 110 101 22 chr11 53643668 53643807 -68200049 - B1_Mur4 SINE Alu 0 150 1 3 994 974 41 0 32 chr11 53643916 53644042 -68199814 - B1_Mus1 SINE Alu 0 148 27 3 994 938 158 0 20 chr11 53644073 53644222 -68199634 - B1_Mur3 SINE Alu -1 148 3 3 994 800 238 130 0 chr11 53644304 53644489 -68199367 + ID_B1 SINE B4 2 210 -14 3 994 1013 128 24 0 chr11 53644714 53644878 -68198978 + URR1A DNA MER1_type 59 226 0 3 994 296 309 15 54 chr11 53645187 53645317 -68198539 + MT2B LTR ERVL 133 257 -344 3 994 726 123 9 0 chr11 53645247 53645361 -68198495 + B1_Mus1 SINE Alu 34 148 0 3 994 1137 66 46 0 chr11 53645365 53645516 -68198340 + B2_Mm1a SINE B2 2 159 -34 3 994 180 0 0 0 chr11 53645516 53645536 -68198320 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 994 5590 31 2 0 chr11 53645537 53646181 -68197675 - L1Md_T LINE L1 0 6582 5938 3 994 9856 35 5 2 chr11 53646181 53647518 -68196338 + L1Md_A LINE L1 4730 6083 -898 3 994 348 24 0 0 chr11 53647583 53647624 -68196232 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 994 329 268 66 82 chr11 53647799 53647921 -68195935 + PB1D7 SINE Alu 1 120 0 3 994 189 107 0 0 chr11 53647932 53647960 -68195896 + (TAA)n Simple_repeat Simple_repeat 3 30 0 3 994 216 0 0 0 chr11 53647960 53647983 -68195873 + (CCA)n Simple_repeat Simple_repeat 2 25 0 4 994 896 36 9 0 chr11 53647984 53648096 -68195760 + B1_Mus1 SINE Alu 36 148 0 4 994 207 0 0 0 chr11 53648098 53648121 -68195735 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 994 1407 70 43 0 chr11 53648198 53648383 -68195473 + B2_Mm1a SINE B2 1 193 0 4 994 343 313 112 103 chr11 53648499 53648741 -68195115 - MLT1J LTR MaLR -8 504 261 4 994 303 234 78 0 chr11 53648793 53648857 -68194999 + RSINE1 SINE B4 83 151 -14 4 994 551 169 237 0 chr11 53648939 53649057 -68194799 - B1_Mus1 SINE Alu -1 147 2 4 994 240 366 67 39 chr11 53649792 53649971 -68193885 + MIR SINE MIR 3 186 -76 4 994 699 151 134 0 chr11 53650161 53650280 -68193576 + B1_Mus1 SINE Alu 5 139 -9 4 994 234 0 0 0 chr11 53650280 53650306 -68193550 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 4 994 508 292 13 40 chr11 53650351 53650501 -68193355 - RSINE1 SINE B4 -19 146 1 4 994 255 340 149 0 chr11 53650501 53650585 -68193271 - LTR33 LTR ERVL -312 203 106 4 994 906 122 0 0 chr11 53650885 53651065 -68192791 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 994 665 242 84 30 chr11 53652320 53652486 -68191370 - ID_B1 SINE B4 0 224 50 4 994 279 0 0 0 chr11 53654699 53654730 -68189126 + (T)n Simple_repeat Simple_repeat 1 31 0 4 994 610 263 109 55 chr11 53654833 53655107 -68188749 - B4A SINE B4 -3 289 1 4 994 530 232 12 72 chr11 53655263 53655430 -68188426 + RSINE1 SINE B4 3 159 -6 4 994 208 357 55 16 chr11 53655627 53655755 -68188101 - MIRb SINE MIR -39 229 97 4 994 230 240 114 48 chr11 53656499 53656604 -68187252 + RLTR40 LTR ERVK 260 371 -446 4 994 970 244 81 26 chr11 53656648 53656921 -68186935 + B4A SINE B4 1 288 -4 4 994 627 291 47 8 chr11 53657250 53657467 -68186389 - ID_B1 SINE B4 -3 221 3 4 994 681 297 9 47 chr11 53658322 53658534 -68185322 - ID_B1 SINE B4 -20 204 1 4 994 1243 41 0 7 chr11 53658645 53658791 -68185065 - B1_Mus2 SINE Alu -2 145 1 4 994 327 242 0 0 chr11 53658791 53658846 -68185010 + ID4 SINE ID 22 77 -6 4 994 216 0 0 0 chr11 53658846 53658870 -68184986 + (CATA)n Simple_repeat Simple_repeat 2 25 0 4 994 24 0 0 0 chr11 53659675 53659699 -68184157 + AT_rich Low_complexity Low_complexity 1 24 0 4 994 772 104 55 76 chr11 53660169 53660191 -68183665 + B1_Mur4 SINE Alu 1 21 -129 4 994 1525 48 11 5 chr11 53660191 53660379 -68183477 - B2_Mm1t SINE B2 -4 189 1 4 994 772 104 55 76 chr11 53660379 53660501 -68183355 + B1_Mur4 SINE Alu 22 142 -8 4 994 360 0 0 0 chr11 53660965 53661005 -68182851 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 994 1750 16 0 0 chr11 53661186 53661379 -68182477 + B2_Mm1a SINE B2 1 193 0 4 994 682 257 22 28 chr11 53661404 53661569 -68182287 - RSINE1 SINE B4 0 165 1 4 994 780 179 7 7 chr11 53661704 53661839 -68182017 + B1_Mus1 SINE Alu 14 148 0 4 994 1007 123 20 79 chr11 53661961 53662110 -68181746 + B2_Mm2 SINE B2 3 152 -43 4 994 530 254 102 0 chr11 53662110 53662228 -68181628 - B1_Mur2 SINE Alu -17 132 3 4 994 1007 123 20 79 chr11 53662228 53662281 -68181575 + B2_Mm2 SINE B2 153 193 -2 4 994 1193 62 7 0 chr11 53662351 53662497 -68181359 - B1_Mus1 SINE Alu 0 148 2 4 994 439 229 109 119 chr11 53662890 53663083 -68180773 - B3A SINE B2 -7 191 1 4 994 425 19 0 18 chr11 53663712 53663767 -68180089 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 4 994 661 168 95 8 chr11 53663767 53663893 -68179963 - B1_Mur3 SINE Alu -12 137 1 4 994 324 279 115 0 chr11 53663903 53664007 -68179849 - PB1D10 SINE Alu 0 117 2 4 994 782 242 0 18 chr11 53664062 53664226 -68179630 - RSINE1 SINE B4 -3 162 2 4 994 568 227 18 0 chr11 53664265 53664375 -68179481 - B1_Mm SINE Alu -11 136 25 4 994 234 227 125 62 chr11 53664758 53664769 -68179087 + B3A SINE B2 1 49 -149 4 994 606 258 67 130 chr11 53664769 53664798 -68179058 + B4 SINE B4 13 45 -247 4 994 447 19 0 0 chr11 53664798 53664850 -68179006 + (CAAG)n Simple_repeat Simple_repeat 3 54 0 4 994 234 227 125 62 chr11 53664850 53664889 -68178967 + B3A SINE B2 50 85 -113 4 994 606 258 67 130 chr11 53664889 53665119 -68178737 + B4 SINE B4 46 291 -1 4 994 185 211 18 0 chr11 53665119 53665176 -68178680 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 994 302 309 87 0 chr11 53665670 53665796 -68178060 + MLT1D LTR MaLR 3 139 -366 4 994 229 213 43 0 chr11 53665857 53665904 -68177952 + MLT1D LTR MaLR 417 465 -40 4 994 275 265 141 24 chr11 53665907 53665992 -68177864 - RSINE1 SINE B4 -29 136 42 4 994 201 121 0 0 chr11 53666245 53666278 -68177578 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 994 868 229 68 11 chr11 53666280 53666470 -68177386 - B3 SINE B2 -14 202 2 4 994 906 202 91 30 chr11 53666487 53666686 -68177170 - B3 SINE B2 0 216 6 4 994 510 248 112 0 chr11 53666695 53666820 -68177036 - ID_B1 SINE B4 -7 217 79 4 994 415 339 137 24 chr11 53666860 53667108 -68176748 - B4A SINE B4 -13 279 4 4 994 271 231 12 60 chr11 53667125 53667208 -68176648 - ID SINE ID -136 88 10 4 994 696 245 31 12 chr11 53667774 53667935 -68175921 + RSINE1 SINE B4 2 165 0 4 994 797 238 34 19 chr11 53668047 53668253 -68175603 + B3 SINE B2 3 211 -5 4 994 612 234 0 4 chr11 53668276 53668519 -68175337 + (TA)n Simple_repeat Simple_repeat 1 241 0 4 994 394 318 30 54 chr11 53668693 53668896 -68174960 + B3A SINE B2 1 198 0 4 994 571 217 8 8 chr11 53668933 53669054 -68174802 + ID_B1 SINE B4 104 224 0 4 994 261 0 0 0 chr11 53669245 53669274 -68174582 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 994 207 0 0 0 chr11 53669610 53669633 -68174223 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 994 1129 82 0 37 chr11 53669633 53669797 -68174059 - B2_Mm2 SINE B2 -15 180 23 4 994 814 173 0 86 chr11 53669808 53669960 -68173896 + B1_Mur2 SINE Alu 11 149 0 4 994 22 0 0 0 chr11 53670163 53670185 -68173671 + AT_rich Low_complexity Low_complexity 1 22 0 4 994 2232 194 41 25 chr11 53670284 53670771 -68173085 + MT2A LTR ERVL 5 567 -17 4 994 216 86 0 0 chr11 53671022 53671057 -68172799 + (CCCCG)n Simple_repeat Simple_repeat 2 36 0 4 994 397 156 153 20 chr11 53671613 53671711 -68172145 - B1F2 SINE Alu -20 129 19 4 994 253 253 12 37 chr11 53672270 53672352 -68171504 + GA-rich Low_complexity Low_complexity 1 80 0 4 994 816 105 67 8 chr11 53673066 53673200 -68170656 - URR1A DNA MER1_type 0 226 85 4 994 229 196 21 21 chr11 53673382 53673422 -68170434 + B4 SINE B4 1 41 -251 4 994 954 59 70 49 chr11 53673422 53673565 -68170291 + B1_Mus2 SINE Alu 1 146 -1 4 994 579 246 64 14 chr11 53673577 53673717 -68170139 + B4 SINE B4 27 173 -119 4 994 445 288 36 9 chr11 53673723 53673835 -68170021 + RSINE1 SINE B4 29 143 -22 4 994 248 214 29 0 chr11 53673859 53673929 -68169927 + A-rich Low_complexity Low_complexity 4 75 0 4 994 235 222 0 18 chr11 53673970 53674011 -68169845 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 994 429 70 0 0 chr11 53674011 53674068 -68169788 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 994 235 222 0 18 chr11 53674068 53674081 -68169775 + (CA)n Simple_repeat Simple_repeat 2 14 0 4 994 209 33 0 32 chr11 53674387 53674418 -68169438 + (CCCCCT)n Simple_repeat Simple_repeat 3 32 0 4 994 1731 26 0 0 chr11 53674735 53674928 -68168928 + B2_Mm1a SINE B2 1 193 0 4 994 1393 218 138 22 chr11 53675123 53675485 -68168371 + MTD LTR MaLR 3 406 -13 4 994 988 224 123 19 chr11 53675554 53675814 -68168042 - B4A SINE B4 -2 290 4 4 994 340 208 0 61 chr11 53676051 53676133 -68167723 + RSINE1 SINE B4 61 137 -28 4 994 185 100 50 0 chr11 53676170 53676210 -68167646 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 994 579 241 134 7 chr11 53676376 53676518 -68167338 + RSINE1 SINE B4 2 161 -4 4 994 285 354 48 30 chr11 53677384 53677550 -68166306 + LTR16E2 LTR ERVL 4 172 -396 4 994 389 368 128 19 chr11 53677566 53677879 -68165977 + LTR16E2 LTR ERVL 219 565 -3 4 994 224 304 9 81 chr11 53680394 53680505 -68163351 + ID_B1 SINE B4 76 178 -46 4 994 269 303 10 20 chr11 53680422 53680523 -68163333 + PB1D10 SINE Alu 17 116 -1 4 994 238 238 366 0 chr11 53680527 53680620 -68163236 + RSINE1 SINE B4 3 129 -36 4 994 221 268 0 0 chr11 53681592 53681648 -68162208 + RSINE1 SINE B4 3 58 -107 4 994 451 256 43 0 chr11 53682058 53682175 -68161681 - ID_B1 SINE B4 -25 199 78 4 994 1214 70 126 17 chr11 53683918 53684093 -68159763 - B2_Mm2 SINE B2 0 195 2 4 994 1137 74 0 20 chr11 53684455 53684606 -68159250 + B1_Mus1 SINE Alu 1 148 0 4 994 552 271 7 7 chr11 53686530 53686671 -68157185 + B1_Mur1 SINE Alu 1 141 -8 4 994 336 233 73 64 chr11 53686683 53686793 -68157063 + B1_Mus1 SINE Alu 4 114 -34 4 994 1155 227 77 4 chr11 53686761 53687022 -68156834 - B4A SINE B4 -11 281 2 4 994 235 183 56 0 chr11 53690360 53690431 -68153425 + (TTAAA)n Simple_repeat Simple_repeat 2 76 0 4 994 699 250 137 0 chr11 53690439 53690607 -68153249 - B3 SINE B2 -25 191 1 4 994 532 252 9 9 chr11 53690658 53690774 -68153082 + PB1D9 SINE Alu 2 117 -3 4 994 329 202 36 55 chr11 53690825 53690935 -68152921 - Ricksha DNA MuDR 0 3246 3139 4 994 910 202 63 6 chr11 53690943 53691117 -68152739 - B3 SINE B2 -6 210 27 4 994 427 111 136 0 chr11 53691214 53691295 -68152561 - Ricksha DNA MuDR -482 2764 2673 4 994 1560 22 16 5 chr11 53691447 53691631 -68152225 + B2_Mm1a SINE B2 2 187 -6 4 994 1291 82 53 0 chr11 53691682 53691853 -68152003 + B2_Mm2 SINE B2 2 181 -14 4 994 355 92 330 18 chr11 53691904 53692013 -68151843 + B2_Mm2 SINE B2 50 192 -3 5 994 538 264 50 11 chr11 53692020 53692200 -68151656 - Ricksha DNA MuDR -828 2418 2232 4 994 451 230 40 0 chr11 53692196 53692296 -68151560 - Ricksha DNA MuDR -2754 492 389 4 994 237 227 0 0 chr11 53692450 53692494 -68151362 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 994 807 289 40 18 chr11 53692507 53692785 -68151071 - B4 SINE B4 -4 288 5 5 994 479 253 26 32 chr11 53693060 53693215 -68150641 - RSINE1 SINE B4 -9 156 3 5 994 973 244 10 0 chr11 53693709 53693914 -68149942 - ID_B1 SINE B4 -17 207 1 5 994 855 163 14 21 chr11 53694750 53694894 -68148962 + B1_Mus1 SINE Alu 6 148 0 5 994 1202 40 0 20 chr11 53694896 53695047 -68148809 + B1_Mus1 SINE Alu 1 148 0 5 994 380 38 38 0 chr11 53695147 53695200 -68148656 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 5 994 279 329 13 0 chr11 53695276 53695355 -68148501 + B4 SINE B4 5 84 -208 5 994 213 39 0 0 chr11 53695404 53695430 -68148426 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 994 798 95 30 53 chr11 53695624 53695689 -68148167 - URR1B DNA MER1_type 0 225 162 5 994 2288 148 20 13 chr11 53695689 53696079 -68147777 + ORR1B1 LTR MaLR 1 393 -1 5 994 798 95 30 53 chr11 53696079 53696146 -68147710 - URR1B DNA MER1_type -64 161 96 5 994 392 274 35 47 chr11 53696361 53696497 -68147359 - PB1D10 SINE Alu -13 137 5 5 994 310 342 53 18 chr11 53696389 53696502 -68147354 - ID_B1 SINE B4 -27 197 81 5 994 1367 88 0 72 chr11 53697699 53697729 -68146127 - B2_Mm2 SINE B2 0 195 167 5 994 1269 40 0 0 chr11 53697729 53697877 -68145979 + B1_Mus1 SINE Alu 1 148 0 5 994 1367 88 0 72 chr11 53697877 53698055 -68145801 - B2_Mm2 SINE B2 -29 166 2 5 994 773 210 101 43 chr11 53698207 53698416 -68145440 + ID_B1 SINE B4 2 222 -2 5 994 2486 75 15 15 chr11 53698683 53699010 -68144846 + ORR1A2 LTR MaLR 1 327 0 5 994 271 212 185 12 chr11 53699545 53699626 -68144230 + B3 SINE B2 112 206 -10 5 994 834 164 29 0 chr11 53699875 53700015 -68143841 - B1_Mur4 SINE Alu -6 144 1 5 994 556 299 85 26 chr11 53700021 53700210 -68143646 - B3A SINE B2 -15 201 2 5 994 349 232 49 0 chr11 53700237 53700319 -68143537 - B4A SINE B4 -205 87 2 5 994 290 239 178 22 chr11 53700624 53700714 -68143142 + PB1 SINE Alu 21 124 -3 5 994 195 179 14 29 chr11 53701291 53701360 -68142496 + G-rich Low_complexity Low_complexity 2 69 0 5 994 1151 82 0 7 chr11 53701556 53701704 -68142152 + B1_Mus2 SINE Alu 1 147 0 5 994 762 177 7 33 chr11 53703261 53703413 -68140443 - B1_Mur4 SINE Alu 0 150 3 5 994 195 42 0 0 chr11 53705252 53705276 -68138580 + (CGCGG)n Simple_repeat Simple_repeat 4 27 0 5 994 395 201 260 52 chr11 53705832 53706005 -68137851 + B3 SINE B2 3 211 -5 5 994 25 51 0 0 chr11 53706011 53706050 -68137806 + AT_rich Low_complexity Low_complexity 1 39 0 5 994 216 200 24 167 chr11 53706504 53706588 -68137268 - PB1D10 SINE Alu -1 116 45 5 994 1121 244 92 9 chr11 53706635 53706983 -68136873 - MTEa LTR MaLR -2 377 1 5 994 355 212 25 0 chr11 53707170 53707250 -68136606 + ID4 SINE ID 2 83 0 5 994 334 274 102 87 chr11 53707396 53707592 -68136264 - MER33 DNA MER1_type -117 207 9 5 994 827 157 21 21 chr11 53707598 53707741 -68136115 - B1_Mur4 SINE Alu -6 144 2 5 994 262 263 13 38 chr11 53708101 53708121 -68135735 + ID_B1 SINE B4 131 207 -17 5 994 321 152 17 0 chr11 53708121 53708180 -68135676 + B1F SINE Alu 73 132 -17 5 994 760 252 30 36 chr11 53708507 53708672 -68135184 + RSINE1 SINE B4 2 165 0 5 994 359 127 16 0 chr11 53708673 53708736 -68135120 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 994 297 288 14 0 chr11 53708758 53708831 -68135025 + B4A SINE B4 217 290 -2 5 994 600 134 0 0 chr11 53708944 53709041 -68134815 + (TCC)n Simple_repeat Simple_repeat 3 99 0 5 994 1166 70 0 0 chr11 53709042 53709184 -68134672 - B1_Mus1 SINE Alu -6 142 1 5 994 326 98 0 56 chr11 53709383 53709437 -68134419 - ORR1C2 LTR MaLR -4 374 324 5 994 246 32 0 0 chr11 53709438 53709469 -68134387 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 994 765 147 8 23 chr11 53709472 53709604 -68134252 - B1_Mur3 SINE Alu -6 143 14 5 994 1695 161 88 9 chr11 53709622 53709942 -68133914 - ORR1C2 LTR MaLR -39 345 1 5 994 797 0 11 0 chr11 53710163 53710256 -68133600 + (TCTCC)n Simple_repeat Simple_repeat 5 98 0 5 994 577 264 50 0 chr11 53710684 53710824 -68133032 + MTE2b LTR MaLR 30 176 -203 5 994 208 158 17 17 chr11 53710836 53710894 -68132962 + GA-rich Low_complexity Low_complexity 1 58 0 5 994 833 246 31 36 chr11 53710895 53711089 -68132767 + MTE2b LTR MaLR 174 366 -13 5 994 861 253 12 175 chr11 53711100 53711426 -68132430 + B4A SINE B4 19 291 -1 5 994 797 71 0 9 chr11 53711470 53711584 -68132272 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 5 994 513 220 246 27 chr11 53711849 53711982 -68131874 + L1MA6 LINE L1 5514 5665 -626 5 994 243 0 0 0 chr11 53711982 53712009 -68131847 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 994 513 220 246 27 chr11 53712009 53712095 -68131761 + L1MA6 LINE L1 5666 5780 -511 5 994 301 327 0 9 chr11 53712100 53712205 -68131651 + (TATATG)n Simple_repeat Simple_repeat 1 104 0 5 994 355 191 0 75 chr11 53712236 53712344 -68131512 + L1MA6 LINE L1 5822 5918 -382 5 994 342 173 49 74 chr11 53712424 53712505 -68131351 - MTEa LTR MaLR -3 376 298 5 994 329 299 53 30 chr11 53712547 53712716 -68131140 - RLTR11A2 LTR ERVK -46 482 310 5 994 3180 158 29 23 chr11 53712738 53713295 -68130561 - RLTR20B2 LTR ERVK 0 560 1 5 994 366 241 82 132 chr11 53713296 53713466 -68130390 - RLTR11A2 LTR ERVK -243 284 116 5 994 1226 48 0 0 chr11 53713466 53713611 -68130245 - B1_Mus2 SINE Alu 0 147 3 5 994 298 240 83 139 chr11 53713611 53713702 -68130154 - RLTR11A2 LTR ERVK -395 133 47 5 994 626 241 11 90 chr11 53714140 53714318 -68129538 + B4 SINE B4 2 165 -127 5 994 436 229 83 93 chr11 53714321 53714338 -68129518 + RMER6B LTR ERVK 1 16 -740 5 994 2032 140 79 142 chr11 53714338 53714795 -68129061 - RLTR23 LTR ERV1 0 430 3 5 994 547 184 150 42 chr11 53714795 53715008 -68128848 + RMER6B LTR ERVK 17 210 -251 5 994 246 131 15 103 chr11 53715036 53715104 -68128752 + RMER6B LTR ERVK 400 461 0 5 994 231 327 62 71 chr11 53715130 53715242 -68128614 + B4A SINE B4 182 292 0 5 994 221 269 41 32 chr11 53715244 53715367 -68128489 + (CATATA)n Simple_repeat Simple_repeat 1 124 0 5 994 637 121 16 0 chr11 53715381 53715505 -68128351 + (CA)n Simple_repeat Simple_repeat 2 127 0 5 994 258 32 0 0 chr11 53715505 53715536 -68128320 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 5 994 189 74 0 0 chr11 53715927 53715954 -68127902 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 5 994 1088 73 7 0 chr11 53716005 53716156 -68127700 + (TTCTC)n Simple_repeat Simple_repeat 4 155 0 5 994 446 0 19 0 chr11 53717940 53717994 -68125862 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 994 1478 235 91 37 chr11 53718005 53718491 -68125365 + RLTR11A2 LTR ERVK 2 513 -14 5 994 224 389 46 0 chr11 53718534 53718642 -68125214 - L2 LINE L2 -657 2762 2650 5 994 274 331 40 0 chr11 53718654 53718729 -68125127 + ID4_ SINE ID 6 83 0 5 994 286 293 0 0 chr11 53718662 53718720 -68125136 + tRNA-Ala-GCG tRNA tRNA 11 68 -7 5 994 243 347 13 26 chr11 53718720 53718739 -68125117 + ID_B1 SINE B4 17 92 -132 5 994 312 250 14 14 chr11 53719011 53719084 -68124772 + RLTR19-int LTR ERVK 4238 4310 -1827 5 994 1158 140 18 0 chr11 53719139 53719310 -68124546 + RLTR21 LTR ERVK 4 177 -1395 5 994 261 0 0 0 chr11 53719312 53719341 -68124515 + (TCTTG)n Simple_repeat Simple_repeat 2 30 0 5 994 802 82 9 0 chr11 53719354 53719464 -68124392 - B1_Mus1 SINE Alu 0 148 38 5 994 1597 162 72 67 chr11 53719463 53719677 -68124179 + RLTR21 LTR ERVK 860 1074 -498 5 994 360 0 0 0 chr11 53719677 53719717 -68124139 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 5 994 1597 162 72 67 chr11 53719717 53719892 -68123964 + RLTR21 LTR ERVK 1075 1250 -322 5 994 557 260 75 29 chr11 53720001 53720175 -68123681 - B3A SINE B2 -15 183 2 5 994 542 273 15 0 chr11 53720189 53720321 -68123535 - B1_Mur4 SINE Alu -1 149 16 5 994 661 290 57 54 chr11 53720431 53720680 -68123176 + MLT2B2 LTR ERVL 12 266 -288 5 994 217 227 91 0 chr11 53720667 53720733 -68123123 - B1F SINE Alu 0 149 78 5 994 628 307 15 63 chr11 53720845 53721050 -68122806 + B4A SINE B4 1 195 -97 5 994 885 255 52 45 chr11 53721053 53721344 -68122512 + Lx8 LINE L1 7179 7471 -2 5 994 646 273 6 24 chr11 53721368 53721533 -68122323 + RLTR18 LTR ERVK 9 170 -446 5 994 740 281 90 41 chr11 53721629 53721896 -68121960 + RLTR18 LTR ERVK 332 611 -5 5 994 235 229 14 129 chr11 53721914 53721928 -68121928 + B4A SINE B4 216 229 -63 5 994 870 146 27 20 chr11 53721928 53722075 -68121781 + B1_Mur3 SINE Alu 2 149 0 5 994 261 0 0 0 chr11 53722078 53722107 -68121749 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 994 235 229 14 129 chr11 53722107 53722158 -68121698 + B4A SINE B4 230 277 -15 5 994 410 79 16 0 chr11 53722162 53722225 -68121631 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 994 2648 154 28 92 chr11 53723046 53723283 -68120573 + RLTR28 LTR ERVL 2 229 -295 5 994 1226 61 0 0 chr11 53723283 53723430 -68120426 - B1_Mus2 SINE Alu 0 147 1 5 994 2648 154 28 92 chr11 53723430 53723474 -68120382 + RLTR28 LTR ERVL 230 256 -268 5 994 1124 70 14 0 chr11 53723474 53723616 -68120240 + B1_Mus1 SINE Alu 5 148 0 5 994 537 16 0 0 chr11 53723618 53723680 -68120176 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 5 994 2648 154 28 92 chr11 53723680 53723938 -68119918 + RLTR28 LTR ERVL 257 510 -14 5 994 199 29 0 79 chr11 53724368 53724406 -68119450 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 994 828 146 22 7 chr11 53724408 53724546 -68119310 - B1_Mur4 SINE Alu -8 142 3 5 994 325 291 90 28 chr11 53725117 53725262 -68118594 - L1ME4a LINE L1 -4 6120 5967 5 994 433 141 0 0 chr11 53725330 53725394 -68118462 - ID_B1 SINE B4 -2 222 159 5 994 233 218 0 18 chr11 53725561 53725617 -68118239 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 994 494 186 10 58 chr11 53725636 53725739 -68118117 - RLTR18B LTR ERVK -199 313 216 5 994 529 270 102 33 chr11 53725750 53725995 -68117861 + RLTR18B LTR ERVK 70 331 -181 5 994 540 264 83 0 chr11 53726065 53726209 -68117647 + B4A SINE B4 1 156 -136 5 994 187 275 57 91 chr11 53726800 53726888 -68116968 - MIRm SINE MIR -29 247 163 5 994 32 26 0 0 chr11 53727166 53727205 -68116651 + AT_rich Low_complexity Low_complexity 1 39 0 5 994 608 238 13 64 chr11 53727239 53727396 -68116460 - RSINE1 SINE B4 -6 159 11 5 994 965 221 50 22 chr11 53727433 53727653 -68116203 + B4 SINE B4 1 226 -66 6 994 467 269 0 0 chr11 53727653 53727757 -68116099 + RSINE1 SINE B4 2 105 -60 6 994 333 0 0 0 chr11 53727767 53727804 -68116052 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 994 247 211 129 52 chr11 53727839 53727994 -68115862 + RLTR40 LTR ERVK 505 671 -146 6 994 242 250 0 18 chr11 53728730 53728787 -68115069 + (TATG)n Simple_repeat Simple_repeat 3 58 0 6 994 1045 284 7 11 chr11 53728795 53729073 -68114783 - B4A SINE B4 -10 282 6 6 994 342 0 0 0 chr11 53729495 53729533 -68114323 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 994 682 259 28 113 chr11 53729552 53729635 -68114221 - B4A SINE B4 -2 290 213 6 994 730 233 119 5 chr11 53729635 53729829 -68114027 - B3 SINE B2 0 216 1 6 994 682 259 28 113 chr11 53729829 53729993 -68113863 - B4A SINE B4 -80 212 64 6 994 1148 89 19 0 chr11 53730504 53730661 -68113195 + B2_Mm2 SINE B2 30 189 -6 6 994 490 284 78 74 chr11 53731079 53731296 -68112560 + RMER15 LTR ERVL 191 408 -167 6 994 1174 28 0 27 chr11 53731297 53731446 -68112410 - MTB LTR MaLR 0 400 256 6 994 1595 42 0 0 chr11 53731426 53731618 -68112238 + MTB LTR MaLR 209 400 0 6 994 691 192 75 25 chr11 53731618 53731778 -68112078 + RMER15 LTR ERVL 405 572 -3 6 994 290 309 35 58 chr11 53731805 53731891 -68111965 + B4 SINE B4 208 291 -1 6 994 1369 82 44 0 chr11 53731976 53732159 -68111697 + B2_Mm2 SINE B2 1 191 -4 6 994 218 217 217 0 chr11 53732865 53732934 -68110922 - B4A SINE B4 -208 84 1 6 994 525 233 20 107 chr11 53732934 53733083 -68110773 + B1F SINE Alu 13 148 -1 6 994 233 241 69 0 chr11 53733083 53733141 -68110715 + ID4_ SINE ID 2 63 -20 6 994 1252 124 11 0 chr11 53733169 53733347 -68110509 + B2_Mm2 SINE B2 1 180 -15 6 994 219 139 0 0 chr11 53733526 53733562 -68110294 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 994 275 310 0 12 chr11 53733567 53733652 -68110204 - RSINE1 SINE B4 -31 134 51 6 994 914 279 20 34 chr11 53733919 53734212 -68109644 - B4 SINE B4 -3 289 1 6 994 1299 98 49 0 chr11 53734345 53734528 -68109328 + B2_Mm2 SINE B2 1 192 -3 6 994 665 277 80 65 chr11 53734846 53735122 -68108734 - B4A SINE B4 0 292 31 6 994 291 54 0 0 chr11 53735128 53735165 -68108691 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 994 2690 194 78 31 chr11 53735165 53735745 -68108111 - RLTR18 LTR ERVK -9 607 1 6 994 301 355 113 0 chr11 53735875 53736016 -68107840 - HAL1-3A_ME LINE L1 -419 2439 2283 6 994 213 211 0 55 chr11 53736016 53736071 -68107785 + CT-rich Low_complexity Low_complexity 5 56 0 6 994 280 241 118 71 chr11 53736075 53736160 -68107696 - ID_B1 SINE B4 -16 208 120 6 994 1380 222 107 12 chr11 53737211 53737557 -68106299 + MTEa LTR MaLR 1 379 0 6 994 352 231 14 171 chr11 53737650 53737796 -68106060 + MT2B LTR ERVL 142 264 -337 6 994 1004 106 7 0 chr11 53737689 53737830 -68106026 + B1_Mur4 SINE Alu 9 150 0 6 994 513 294 51 79 chr11 53737690 53737867 -68105989 + B4 SINE B4 94 265 -27 6 994 789 267 31 26 chr11 53737877 53738069 -68105787 + B3 SINE B2 23 215 -1 6 994 1835 108 39 14 chr11 53738110 53738392 -68105464 + RLTR12B LTR ERVK 1 289 -239 6 994 483 18 0 0 chr11 53738392 53738448 -68105408 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 994 572 181 7 38 chr11 53738470 53738613 -68105243 + RLTR12B LTR ERVK 238 371 -197 6 994 3049 42 3 0 chr11 53738613 53738971 -68104885 - L1Md_F2 LINE L1 -32 6550 6192 6 994 26 0 0 0 chr11 53739016 53739042 -68104814 + AT_rich Low_complexity Low_complexity 1 26 0 6 994 539 110 27 9 chr11 53739161 53739271 -68104585 + L1_Mus4 LINE L1 6518 6629 -7 6 124 828 186 47 78 chr11 53739336 53739528 -68104328 + RLTR12B LTR ERVK 343 528 0 6 995 251 247 11 120 chr11 53740068 53740160 -68103696 + PB1 SINE Alu 40 121 -6 6 995 326 250 15 0 chr11 53740167 53740235 -68103621 + ID4 SINE ID 15 83 0 6 995 3521 30 0 0 chr11 53740310 53740706 -68103150 - MTA_Mm LTR MaLR 0 396 1 6 995 9705 16 3 0 chr11 53740706 53741801 -68102055 - MTA_Mm-int LTR MaLR 0 1098 1 6 995 3521 30 0 0 chr11 53741801 53742197 -68101659 - MTA_Mm LTR MaLR 0 396 1 6 995 317 186 65 65 chr11 53742308 53742400 -68101456 - MER2 DNA MER2_type -157 188 97 6 995 251 247 123 0 chr11 53743044 53743117 -68100739 - ID4_ SINE ID 0 83 2 6 995 1276 140 269 0 chr11 53743153 53743424 -68100432 - ORR1C2 LTR MaLR -1 383 40 6 995 729 234 211 11 chr11 53743615 53743875 -68099981 + ORR1D1 LTR MaLR 1 312 -62 6 995 2791 202 37 32 chr11 53743851 53744444 -68099412 + RLTR18 LTR ERVK 18 613 -3 6 995 532 112 12 0 chr11 53744448 53744528 -68099328 + ORR1D1 LTR MaLR 290 370 0 6 995 674 257 99 24 chr11 53745468 53745679 -68098177 + B4A SINE B4 4 230 -62 6 995 336 268 186 9 chr11 53745680 53745793 -68098063 + RSINE1 SINE B4 4 136 -29 6 995 248 343 0 0 chr11 53745811 53745881 -68097975 + B4A SINE B4 214 283 -9 6 995 726 215 15 0 chr11 53746277 53746412 -68097444 - B1_Mus2 SINE Alu -1 146 10 6 995 549 80 0 0 chr11 53746431 53746506 -68097350 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 6 995 1270 40 0 0 chr11 53746523 53746671 -68097185 - B1_Mus1 SINE Alu 0 148 1 6 995 1674 231 89 13 chr11 53746715 53747097 -68096759 + MTD LTR MaLR 1 411 -8 6 995 680 292 0 42 chr11 53747130 53747298 -68096558 + RSINE1 SINE B4 3 163 -2 6 995 227 339 42 73 chr11 53747298 53747321 -68096535 + B2_Mm2 SINE B2 2 186 -9 6 995 1078 141 70 5 chr11 53747425 53747611 -68096245 + MT2A LTR ERVL 1 198 -335 6 995 1199 35 7 0 chr11 53747625 53747768 -68096088 + B1_Mus1 SINE Alu 5 148 0 6 995 1659 37 0 0 chr11 53747771 53747962 -68095894 + B2_Mm1a SINE B2 1 191 -2 6 995 353 269 82 0 chr11 53747987 53748121 -68095735 + L1MD LINE L1 3961 4105 -2041 6 995 3398 107 251 2 chr11 53748867 53749457 -68094399 - RMER19A LTR ERVK 0 737 1 6 995 6930 31 11 0 chr11 53750090 53750898 -68092958 - L1Md_F3 LINE L1 -14 6570 5754 6 995 1382 23 6 0 chr11 53751029 53751200 -68092656 + L1Md_F2 LINE L1 6411 6582 0 6 995 220 222 0 107 chr11 53751235 53751366 -68092490 + CT-rich Low_complexity Low_complexity 3 119 0 6 995 1371 209 138 22 chr11 53751446 53751808 -68092048 + MTD LTR MaLR 3 406 -13 6 995 833 223 0 22 chr11 53751877 53752056 -68091800 - B4A SINE B4 -2 290 116 6 995 2569 87 101 20 chr11 53752093 53752491 -68091365 + RLTR23 LTR ERV1 1 430 0 6 995 1454 148 168 94 chr11 53752542 53752602 -68091254 - ORR1B2 LTR MaLR -1 377 334 6 995 1396 104 0 5 chr11 53752602 53752795 -68091061 - B2_Mm2 SINE B2 0 195 4 6 995 1454 148 168 94 chr11 53752795 53753085 -68090771 - ORR1B2 LTR MaLR -45 333 1 6 995 1168 136 82 23 chr11 53753085 53753301 -68090555 - ORR1B2-int LTR MaLR 0 1509 1281 6 995 2120 107 21 59 chr11 53753301 53753640 -68090216 + ORR1A3 LTR MaLR 1 326 0 6 995 2183 146 8 53 chr11 53753640 53754033 -68089823 - ORR1B2-int LTR MaLR -225 1284 910 6 995 5032 101 64 12 chr11 53754033 53754804 -68089052 + RMER17A2 LTR ERVK 1 811 -95 6 995 300 218 18 0 chr11 53754796 53754851 -68089005 - B1_Mus2 SINE Alu -90 57 2 6 995 3581 156 48 33 chr11 53754851 53755487 -68088369 - ORR1B2-int LTR MaLR -861 648 3 6 995 1589 166 148 19 chr11 53755488 53755813 -68088043 - ORR1B2 LTR MaLR 0 367 1 6 995 336 302 0 44 chr11 53755905 53755995 -68087861 + RSINE1 SINE B4 74 159 -6 6 995 23 0 0 0 chr11 53755995 53756018 -68087838 + AT_rich Low_complexity Low_complexity 1 23 0 6 995 2928 220 78 59 chr11 53756055 53756923 -68086933 + RMER19B LTR ERVK 2 886 -16 6 995 603 241 130 7 chr11 53757653 53757799 -68086057 + RSINE1 SINE B4 2 165 0 6 995 413 297 78 41 chr11 53757850 53758120 -68085736 + LTR16B1 LTR ERVL 201 480 0 6 995 294 138 68 17 chr11 53758159 53758218 -68085638 - ORR1D1 LTR MaLR 0 374 313 6 995 2875 165 53 49 chr11 53758215 53758782 -68085074 + RMER4B LTR ERVK 17 585 0 6 995 1057 214 122 33 chr11 53758782 53759086 -68084770 - ORR1D1 LTR MaLR -43 331 1 6 995 262 319 14 0 chr11 53759743 53759812 -68084044 + ID4 SINE ID 1 70 -13 6 995 319 326 0 22 chr11 53759884 53759975 -68083881 + RSINE1 SINE B4 3 91 -74 6 995 687 227 0 28 chr11 53760021 53760166 -68083690 + B1_Mur3 SINE Alu 5 145 -4 6 995 524 0 26 26 chr11 53760168 53760246 -68083610 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 995 762 263 20 0 chr11 53760287 53760439 -68083417 - B3 SINE B2 -61 155 1 6 995 23 0 0 0 chr11 53760445 53760468 -68083388 + AT_rich Low_complexity Low_complexity 1 23 0 6 995 566 290 18 12 chr11 53760550 53760714 -68083142 - ORR1E LTR MaLR -194 165 1 6 995 295 306 47 47 chr11 53760790 53760917 -68082939 + PB1 SINE Alu 1 127 0 6 995 180 250 39 0 chr11 53761022 53761074 -68082782 - L4 LINE RTE -1310 719 666 6 995 282 354 48 30 chr11 53761826 53761992 -68081864 + LTR16E2 LTR ERVL 4 172 -396 6 995 356 375 112 20 chr11 53762008 53762302 -68081554 + LTR16E2 LTR ERVL 219 539 -29 6 995 1117 247 31 68 chr11 53762305 53762731 -68081125 - RMER16 LTR ERVK 0 533 1 6 995 2128 194 65 77 chr11 53762877 53763413 -68080443 - MT2A LTR ERVL -3 530 1 6 995 30 27 0 0 chr11 53763457 53763494 -68080362 + AT_rich Low_complexity Low_complexity 1 37 0 6 995 275 313 0 0 chr11 53764303 53764386 -68079470 - BC1_Mm scRNA scRNA -56 96 14 6 995 210 314 9 81 chr11 53765869 53765980 -68077876 + ID_B1 SINE B4 76 178 -46 6 995 256 313 10 20 chr11 53765897 53765998 -68077858 + PB1D10 SINE Alu 17 116 -1 6 995 238 238 366 0 chr11 53766002 53766095 -68077761 + RSINE1 SINE B4 3 129 -36 6 995 221 268 0 0 chr11 53767070 53767126 -68076730 + RSINE1 SINE B4 3 58 -107 6 995 483 256 43 0 chr11 53767536 53767653 -68076203 - ID_B1 SINE B4 -25 199 78 6 995 879 149 0 13 chr11 53768762 53768912 -68074944 + URR1A DNA MER1_type 77 224 -2 6 995 447 287 36 14 chr11 53770714 53770852 -68073004 + B1_Mur1 SINE Alu 1 141 -8 6 995 195 100 0 0 chr11 53770852 53770882 -68072974 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 995 1141 229 72 18 chr11 53771016 53771034 -68072822 - B4A SINE B4 0 292 277 7 995 342 0 0 0 chr11 53771034 53771072 -68072784 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 995 1141 229 72 18 chr11 53771072 53771329 -68072527 - B4A SINE B4 -16 276 2 7 995 507 255 228 28 chr11 53774229 53774410 -68069446 - Ricksha DNA MuDR -83 3163 2921 7 995 1403 84 16 10 chr11 53774410 53774602 -68069254 + B2_Mm2 SINE B2 3 195 0 7 995 507 255 228 28 chr11 53774602 53774710 -68069146 - Ricksha DNA MuDR -326 2920 2816 7 995 461 328 0 0 chr11 53774831 53774950 -68068906 - RSINE1 SINE B4 -29 136 18 7 995 851 256 39 0 chr11 53775011 53775214 -68068642 - B3 SINE B2 -5 211 1 7 995 282 56 0 0 chr11 53775264 53775300 -68068556 + (CCA)n Simple_repeat Simple_repeat 2 37 0 7 995 683 250 89 12 chr11 53775325 53775572 -68068284 - Ricksha DNA MuDR -494 2752 2487 7 995 229 333 46 28 chr11 53775782 53775890 -68067966 - MLT2B3 LTR ERVL -407 147 38 7 995 564 130 0 0 chr11 53776001 53776093 -68067763 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 995 916 259 50 29 chr11 53776106 53776384 -68067472 - B4 SINE B4 -4 288 5 7 995 25 0 0 0 chr11 53777791 53777816 -68066040 + AT_rich Low_complexity Low_complexity 1 25 0 7 995 432 0 0 0 chr11 53777885 53777933 -68065923 + (GGGAGA)n Simple_repeat Simple_repeat 2 49 0 7 995 571 248 26 32 chr11 53778109 53778263 -68065593 - RSINE1 SINE B4 -10 155 3 7 995 749 137 136 8 chr11 53778416 53778548 -68065308 + B1_Mur4 SINE Alu 2 150 0 7 995 297 0 0 0 chr11 53778586 53778619 -68065237 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 995 285 341 42 50 chr11 53778762 53779000 -68064856 + L2b LINE L2 2916 3163 -224 7 995 6951 70 24 8 chr11 53779027 53779941 -68063915 + RLTR13B3 LTR ERVK 1 929 0 7 995 297 319 71 60 chr11 53780070 53780330 -68063526 + MIR SINE MIR 1 276 0 7 995 730 218 21 0 chr11 53781082 53781224 -68062632 - B1_Mus2 SINE Alu -1 146 2 7 995 316 307 62 35 chr11 53781338 53781483 -68062373 + B1F1 SINE Alu 1 149 0 7 995 249 270 16 0 chr11 53781510 53781573 -68062283 + B4 SINE B4 11 74 -218 7 995 1065 130 155 5 chr11 53781877 53782070 -68061786 - URR1A DNA MER1_type 0 226 5 7 995 456 273 4 7 chr11 53782277 53782391 -68061465 - PB1D10 SINE Alu -29 120 9 7 995 190 322 24 73 chr11 53783563 53783687 -68060169 + MIR SINE MIR 24 141 -67 7 995 4666 169 183 60 chr11 53783949 53785131 -68058725 + RMER12 LTR ERVK 1 1404 0 7 995 419 221 13 0 chr11 53785902 53785979 -68057877 + ID SINE ID 2 79 -145 7 995 4064 173 71 58 chr11 53785992 53786935 -68056921 + RMER19B LTR ERVK 1 890 -12 7 995 5580 115 22 11 chr11 53787001 53787845 -68056011 + RMER12B LTR ERVK 1 854 -550 7 995 5498 99 19 94 chr11 53787840 53788784 -68055072 - ORR1A3-int LTR MaLR -62 1901 1029 7 995 6143 181 25 57 chr11 53788784 53790098 -68053758 - MERVL-int LTR ERVL -4213 1272 1 7 995 3632 113 95 20 chr11 53790098 53790657 -68053199 - MT2B LTR ERVL 0 601 1 7 995 2395 131 12 0 chr11 53790680 53791024 -68052832 + ORR1B1 LTR MaLR 47 394 0 7 995 389 273 30 10 chr11 53791351 53791451 -68052405 + B3 SINE B2 109 210 -6 7 995 918 53 0 0 chr11 53791488 53791602 -68052254 + B1_Mus1 SINE Alu 35 148 0 7 995 251 250 169 56 chr11 53791730 53791819 -68052037 - B4A SINE B4 0 292 194 7 995 513 275 13 63 chr11 53791863 53792022 -68051834 - B3A SINE B2 -7 191 41 7 995 281 293 0 62 chr11 53792058 53792138 -68051718 - B3A SINE B2 -123 75 1 7 995 698 219 77 6 chr11 53794183 53794339 -68049517 + B3 SINE B2 38 204 -12 7 995 348 134 76 26 chr11 53794562 53794648 -68049208 + B1_Mur1 SINE Alu 60 146 -3 7 995 231 36 0 0 chr11 53794781 53794809 -68049047 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 995 325 255 21 11 chr11 53794812 53794907 -68048949 - PB1 SINE Alu -17 110 15 7 995 1239 240 95 6 chr11 53794947 53795295 -68048561 - MTEa LTR MaLR 0 379 1 7 995 369 292 108 63 chr11 53795553 53795776 -68048080 - MER33 DNA MER1_type -82 242 10 7 995 42 0 0 0 chr11 53795795 53795837 -68048019 + AT_rich Low_complexity Low_complexity 1 42 0 7 995 1166 85 6 0 chr11 53795932 53796109 -68047747 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 7 995 59 15 0 0 chr11 53796152 53796218 -68047638 + AT_rich Low_complexity Low_complexity 1 66 0 7 995 405 0 0 0 chr11 53796564 53796609 -68047247 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 995 642 219 7 21 chr11 53796919 53797059 -68046797 - ID_B1 SINE B4 -1 223 86 7 995 180 77 0 0 chr11 53797493 53797519 -68046337 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 995 906 167 0 0 chr11 53797519 53797657 -68046199 - B1_Mus1 SINE Alu -8 140 3 7 995 448 299 66 78 chr11 53797657 53797686 -68046170 - B4 SINE B4 -74 218 54 7 995 196 409 146 0 chr11 53797758 53797922 -68045934 - MIRb SINE MIR -68 200 13 7 995 300 311 154 22 chr11 53798327 53798563 -68045293 + MER21B LTR ERV1 465 731 -132 7 995 640 304 22 0 chr11 53798653 53798837 -68045019 - B4A SINE B4 0 292 105 7 995 338 230 34 11 chr11 53798861 53798949 -68044907 + ORR1D2 LTR MaLR 281 370 0 7 995 440 297 8 33 chr11 53798949 53799069 -68044787 - RSINE1 SINE B4 -47 118 2 7 995 393 109 0 0 chr11 53799516 53799580 -68044276 + (TATG)n Simple_repeat Simple_repeat 1 64 0 7 995 428 247 10 0 chr11 53799591 53799688 -68044168 - PB1 SINE Alu -16 111 14 7 995 398 259 201 7 chr11 53800429 53800573 -68043283 - ID_B1 SINE B4 -52 172 1 7 995 226 200 0 22 chr11 53800533 53800579 -68043277 - ZP3AR Satellite Satellite -131 81 37 7 995 1390 85 21 0 chr11 53800771 53800960 -68042896 - B2_Mm2 SINE B2 -2 193 1 7 995 342 91 0 0 chr11 53801176 53801231 -68042625 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 7 995 647 258 92 5 chr11 53801745 53801940 -68041916 + B3 SINE B2 2 213 -3 7 995 1429 94 0 25 chr11 53802810 53803006 -68040850 + B2_Mm2 SINE B2 2 192 -3 7 995 322 255 160 20 chr11 53803119 53803219 -68040637 - B4A SINE B4 -173 119 6 7 995 436 297 22 72 chr11 53803228 53803366 -68040490 + B1F SINE Alu 18 148 -1 7 995 288 0 0 0 chr11 53803616 53803648 -68040208 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 7 995 434 291 0 0 chr11 53803660 53803770 -68040086 - RSINE1 SINE B4 -35 130 21 7 995 678 235 22 22 chr11 53803801 53803940 -68039916 - ID_B1 SINE B4 0 224 86 7 995 316 374 0 9 chr11 53804468 53804576 -68039280 - MER3 DNA MER1_type -100 109 3 7 995 236 200 20 0 chr11 53804986 53805036 -68038820 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 995 231 114 0 0 chr11 53805687 53805722 -68038134 + (TTA)n Simple_repeat Simple_repeat 3 37 0 7 995 903 229 54 19 chr11 53805723 53805928 -68037928 - ID_B1 SINE B4 -10 214 3 7 995 229 274 83 28 chr11 53806045 53806154 -68037702 - Lx8 LINE L1 -3 7470 7356 7 995 826 261 97 16 chr11 53806154 53806411 -68037445 - Lx8 LINE L1 -223 7250 6973 7 995 1144 132 0 31 chr11 53806609 53806805 -68037051 + RMER17A LTR ERVK 1 190 -561 7 995 1679 26 0 0 chr11 53807413 53807603 -68036253 - B2_Mm1a SINE B2 -2 191 2 7 995 1493 69 0 0 chr11 53807776 53807964 -68035892 + B2_Mm2 SINE B2 2 189 -6 7 995 643 105 0 0 chr11 53807975 53808061 -68035795 + Lx4B LINE L1 6682 6767 -291 7 995 662 252 48 22 chr11 53808743 53808974 -68034882 + L1M2 LINE L1 4888 5124 -1019 7 995 180 389 0 0 chr11 53809329 53809383 -68034473 + L2a LINE L2 3355 3408 -18 7 995 4243 120 81 40 chr11 53809761 53810480 -68033376 + Lx4B LINE L1 6311 7058 0 7 995 340 97 0 31 chr11 53810505 53810569 -68033287 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 7 995 260 207 138 0 chr11 53811116 53811174 -68032682 - BC1_Mm scRNA scRNA -69 83 18 7 995 249 232 143 0 chr11 53811124 53811180 -68032676 - ID SINE ID -148 76 13 7 995 632 265 18 6 chr11 53811802 53811969 -68031887 + MTE2b LTR MaLR 11 179 -200 7 995 324 102 0 0 chr11 53812242 53812291 -68031565 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 995 1325 270 47 6 chr11 53812555 53812898 -68030958 + ORR1E LTR MaLR 1 357 -2 7 995 522 220 17 22 chr11 53812949 53813130 -68030726 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 7 995 192 291 18 35 chr11 53813229 53813286 -68030570 - MIR SINE MIR -139 123 68 7 995 376 315 68 38 chr11 53813287 53813419 -68030437 + ID_B1 SINE B4 81 216 -8 7 995 1004 281 115 0 chr11 53813431 53813691 -68030165 + B4A SINE B4 2 291 -1 7 995 499 183 12 0 chr11 53814471 53814553 -68029303 + MTEb LTR MaLR 1 83 -296 7 995 2042 212 79 34 chr11 53814555 53815001 -68028855 + RLTR20B1 LTR ERVK 1 470 -93 7 995 252 0 0 0 chr11 53815001 53815029 -68028827 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 995 2042 212 79 34 chr11 53815029 53815114 -68028742 + RLTR20B1 LTR ERVK 471 556 -7 7 995 722 258 22 0 chr11 53815122 53815300 -68028556 + MTEb LTR MaLR 82 263 -116 7 995 223 246 180 0 chr11 53815413 53815474 -68028382 + ID SINE ID 3 74 -150 7 995 267 306 125 15 chr11 53815502 53815638 -68028218 - L4 LINE RTE -139 1890 1740 7 995 643 288 107 5 chr11 53816788 53816994 -68026862 + B4A SINE B4 4 230 -62 7 995 313 281 163 8 chr11 53816995 53817124 -68026732 + RSINE1 SINE B4 4 152 -13 7 995 225 219 34 34 chr11 53817257 53817375 -68026481 + RLTR40 LTR ERVK 570 687 -130 7 995 389 235 0 0 chr11 53817585 53817666 -68026190 - PB1D10 SINE Alu 0 117 37 7 995 270 0 0 0 chr11 53818766 53818796 -68025060 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 995 655 262 44 19 chr11 53819328 53819534 -68024322 + ID_B1 SINE B4 1 211 -13 8 995 483 18 0 0 chr11 53819534 53819590 -68024266 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 8 995 326 122 20 0 chr11 53819671 53819720 -68024136 - MER5B DNA MER1_type -3 175 126 8 995 415 340 50 67 chr11 53819723 53820022 -68023834 + Tigger5 DNA MER2_type 1 294 -2112 8 995 212 353 67 25 chr11 53820218 53820337 -68023519 - MER5B DNA MER1_type -54 124 1 8 995 268 227 13 0 chr11 53822951 53823026 -68020830 + MLT1B LTR MaLR 70 145 -245 8 995 938 261 25 29 chr11 53823225 53823501 -68020355 - B4A SINE B4 -16 276 2 8 995 605 252 0 47 chr11 53823533 53823704 -68020152 + RSINE1 SINE B4 2 164 -1 8 995 23 54 0 0 chr11 53823704 53823741 -68020115 + AT_rich Low_complexity Low_complexity 1 37 0 8 995 975 117 7 0 chr11 53824235 53824372 -68019484 + B1_Mus2 SINE Alu 4 141 -6 8 995 657 76 0 0 chr11 53824583 53824675 -68019181 + (TC)n Simple_repeat Simple_repeat 1 92 0 8 995 1017 320 7 7 chr11 53824680 53824960 -68018896 - B4 SINE B4 -12 280 1 8 995 274 300 29 0 chr11 53826037 53826107 -68017749 + ID2 SINE ID 5 76 -7 8 995 572 246 112 7 chr11 53826210 53826353 -68017503 - ID_B1 SINE B4 0 224 67 8 995 507 33 0 0 chr11 53826430 53826491 -68017365 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 8 995 182 303 191 57 chr11 53826564 53826669 -68017187 - L2c LINE L2 -2 3385 3267 8 995 200 258 16 16 chr11 53827179 53827242 -68016614 + (TATG)n Simple_repeat Simple_repeat 4 66 0 8 995 631 241 226 13 chr11 53827270 53827505 -68016351 - B4A SINE B4 -6 286 2 8 995 252 247 27 0 chr11 53828014 53828087 -68015769 - L1MB8 LINE L1 -7 7037 6963 8 995 545 53 26 0 chr11 53828195 53828271 -68015585 + (TATG)n Simple_repeat Simple_repeat 4 81 0 8 995 633 313 100 42 chr11 53828312 53828572 -68015284 - B4A SINE B4 -16 276 2 8 995 325 321 0 0 chr11 53828749 53828830 -68015026 - ID4_ SINE ID 0 83 3 8 995 1139 286 76 44 chr11 53828832 53829358 -68014498 - L1MB8 LINE L1 -271 6767 6225 8 995 497 238 58 29 chr11 53829332 53829505 -68014351 - L1MB8 LINE L1 -1555 5451 5274 8 995 606 281 70 5 chr11 53829546 53829732 -68014124 - B3A SINE B2 0 198 1 8 995 1086 279 133 23 chr11 53829793 53830289 -68013567 - L1MB8 LINE L1 -5136 2198 1637 8 995 416 111 0 14 chr11 53830289 53830362 -68013494 + (TA)n Simple_repeat Simple_repeat 2 73 0 8 995 1086 279 133 23 chr11 53830362 53830379 -68013477 - L1MB8 LINE L1 -5698 1636 1616 8 995 207 0 0 0 chr11 53830379 53830402 -68013454 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 995 1086 279 133 23 chr11 53830402 53830621 -68013235 - L1MB8 LINE L1 -5719 1615 1384 8 995 437 287 68 27 chr11 53830757 53830904 -68012952 + RSINE1 SINE B4 2 154 -11 8 995 932 121 0 4 chr11 53830927 53831161 -68012695 + (GGA)n Simple_repeat Simple_repeat 1 232 0 8 995 270 0 0 0 chr11 53831161 53831191 -68012665 + (CAG)n Simple_repeat Simple_repeat 1 30 0 8 995 631 305 115 123 chr11 53831312 53832052 -68011804 - L1MB8 LINE L1 -6384 950 217 8 995 273 89 0 0 chr11 53832052 53832097 -68011759 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 8 995 291 241 17 81 chr11 53832177 53832349 -68011507 - L1M4 LINE L1 -749 5397 5237 8 995 4950 188 64 26 chr11 53832370 53833351 -68010505 - RMER1B Other Other 0 1066 49 8 995 232 154 0 0 chr11 53833353 53833394 -68010462 - B3A SINE B2 -62 136 94 8 995 1125 121 0 0 chr11 53833395 53833569 -68010287 + (TTC)n Simple_repeat Simple_repeat 3 176 0 8 995 275 259 0 0 chr11 53833569 53833627 -68010229 + CT-rich Low_complexity Low_complexity 2 59 0 8 995 244 23 93 0 chr11 53833630 53833673 -68010183 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 995 995 130 7 0 chr11 53833682 53833828 -68010028 - B1_Mus2 SINE Alu 0 147 1 8 995 271 280 35 61 chr11 53833989 53834103 -68009753 - B1F2 SINE Alu -38 111 1 8 995 388 256 12 0 chr11 53834103 53834133 -68009723 - ID SINE ID -143 81 51 8 995 448 282 0 18 chr11 53834580 53834692 -68009164 - PB1D10 SINE Alu -2 115 6 8 995 245 304 212 25 chr11 53834587 53834705 -68009151 - B4A SINE B4 -72 220 81 8 995 591 15 0 0 chr11 53835217 53835285 -68008571 + (CA)n Simple_repeat Simple_repeat 2 69 0 8 995 914 126 0 0 chr11 53835890 53836025 -68007831 - B1_Mur3 SINE Alu 0 149 15 8 995 1099 302 138 26 chr11 53837137 53838082 -68005774 + L1MC4a LINE L1 6968 8039 -3 8 995 305 214 4 13 chr11 53838842 53838930 -68004926 - L1M3 LINE L1 -621 5550 5462 8 995 475 299 22 29 chr11 53839606 53839744 -68004112 + B1F1 SINE Alu 13 149 0 8 995 858 158 7 27 chr11 53842828 53842978 -68000878 - B1_Mur2 SINE Alu 0 149 3 8 995 428 260 19 0 chr11 53843368 53843472 -68000384 + PB1D10 SINE Alu 12 117 0 8 995 269 186 0 28 chr11 53843473 53843545 -68000311 + A-rich Low_complexity Low_complexity 3 72 0 8 995 414 289 8 26 chr11 53843745 53843862 -67999994 - PB1 SINE Alu -12 115 1 8 995 307 370 57 25 chr11 53844219 53844567 -67999289 - ERVL-int LTR ERVL -1972 3789 3428 8 995 404 95 32 0 chr11 53844592 53844655 -67999201 + B1_Mur4 SINE Alu 1 65 -85 8 995 377 267 9 28 chr11 53844656 53844764 -67999092 + MTEb LTR MaLR 266 371 -8 8 995 522 228 62 23 chr11 53844951 53845081 -67998775 - MTE2a LTR MaLR -32 347 213 8 995 1749 182 201 32 chr11 53845186 53845446 -67998410 + RLTR18B LTR ERVK 35 321 -191 8 995 1159 82 0 0 chr11 53845446 53845593 -67998263 - B1_Mus1 SINE Alu 0 148 2 8 995 1749 182 201 32 chr11 53845593 53845740 -67998116 + RLTR18B LTR ERVK 322 511 -1 8 995 315 0 0 0 chr11 53846064 53846099 -67997757 + (TC)n Simple_repeat Simple_repeat 2 36 0 8 995 411 21 0 0 chr11 53846099 53846146 -67997710 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 995 351 0 0 0 chr11 53846362 53846401 -67997455 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 995 180 0 0 0 chr11 53846401 53846420 -67997436 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 995 405 0 0 0 chr11 53846420 53846464 -67997392 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 995 724 212 59 29 chr11 53846466 53846636 -67997220 - B3A SINE B2 -22 176 2 8 995 886 185 0 14 chr11 53847249 53847397 -67996459 + B1_Mus1 SINE Alu 3 148 0 8 995 34 0 0 0 chr11 53847441 53847475 -67996381 + GC_rich Low_complexity Low_complexity 1 34 0 8 995 608 234 47 61 chr11 53847562 53847806 -67996050 + LTRIS4 LTR ERV1 276 507 0 8 995 20827 254 18 22 chr11 53847808 53853537 -67990319 + MURVY-int LTR ERV1 5 5787 -1665 8 995 4664 236 2 3 chr11 53853535 53854498 -67989358 + MURVY-int LTR ERV1 6817 7778 0 8 995 575 245 100 33 chr11 53854616 53854875 -67988981 + LTRIS4 LTR ERV1 249 519 0 8 995 267 304 0 0 chr11 53854882 53855007 -67988849 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 8 995 470 280 80 37 chr11 53855065 53855228 -67988628 - ORR1E LTR MaLR -163 196 27 8 995 199 157 19 19 chr11 53855350 53855402 -67988454 + C-rich Low_complexity Low_complexity 3 54 0 8 995 259 359 21 21 chr11 53855417 53855562 -67988294 - HERV16-int LTR ERVL -3110 1886 1742 8 995 1115 144 154 0 chr11 53855785 53855980 -67987876 - URR1B DNA MER1_type 0 225 1 8 995 438 159 22 22 chr11 53856415 53856505 -67987351 + MTD LTR MaLR 330 419 0 8 995 218 95 0 23 chr11 53856785 53856828 -67987028 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 8 995 858 141 104 0 chr11 53856829 53856964 -67986892 - B1_Mur4 SINE Alu -1 149 1 8 995 2095 249 29 12 chr11 53856964 53857455 -67986401 - Lx8 LINE L1 -26 7447 6949 8 995 1401 80 27 5 chr11 53857696 53857884 -67985972 - B2_Mm2 SINE B2 -1 194 3 8 995 1000 237 0 19 chr11 53857949 53858160 -67985696 - B3 SINE B2 -9 207 1 8 995 1664 186 132 16 chr11 53858436 53858533 -67985323 + MTD LTR MaLR 6 106 -313 8 995 342 0 0 0 chr11 53858533 53858571 -67985285 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 995 1664 186 132 16 chr11 53858571 53858844 -67985012 + MTD LTR MaLR 107 418 -1 8 995 414 312 46 0 chr11 53858925 53859034 -67984822 + RSINE1 SINE B4 32 145 -20 8 995 306 0 0 0 chr11 53859287 53859321 -67984535 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 8 995 863 172 8 0 chr11 53859321 53859455 -67984401 - B1_Mus1 SINE Alu -13 135 1 8 995 466 86 25 0 chr11 53859911 53859992 -67983864 + (TA)n Simple_repeat Simple_repeat 1 83 0 8 995 383 293 170 89 chr11 53860066 53860336 -67983520 - B4A SINE B4 0 292 1 8 995 517 280 8 0 chr11 53860468 53860593 -67983263 - MTEb LTR MaLR 0 379 254 8 995 1216 99 17 1 chr11 53860668 53860859 -67982997 - B2_Mm1t SINE B2 -6 210 2 8 995 396 0 0 0 chr11 53860874 53860918 -67982938 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 995 375 23 0 0 chr11 53860927 53860971 -67982885 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 995 1455 200 132 6 chr11 53861078 53861410 -67982446 + ORR1D1 LTR MaLR 1 374 0 8 995 22 35 0 0 chr11 53861423 53861452 -67982404 + AT_rich Low_complexity Low_complexity 1 29 0 8 995 1129 83 0 7 chr11 53861453 53861598 -67982258 + B1_Mus2 SINE Alu 1 144 -3 8 995 2298 139 64 3 chr11 53862179 53862525 -67981331 + ORR1B2 LTR MaLR 1 367 0 8 995 276 258 87 8 chr11 53862788 53862873 -67980983 + B1F SINE Alu 1 136 -13 8 995 869 236 78 0 chr11 53862893 53863084 -67980772 - B3 SINE B2 -3 213 8 8 995 363 284 96 117 chr11 53863084 53863375 -67980481 + ORR1E LTR MaLR 75 359 0 8 995 416 208 76 38 chr11 53864245 53864350 -67979506 + ID_B1 SINE B4 81 189 -35 8 995 360 278 147 58 chr11 53864799 53865182 -67978674 + L2a LINE L2 2742 3160 -266 8 995 859 269 4 58 chr11 53865272 53865497 -67978359 - ID_B1 SINE B4 -11 213 1 8 995 330 115 0 0 chr11 53865675 53865727 -67978129 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 995 894 244 147 4 chr11 53866250 53866501 -67977355 + B4A SINE B4 4 290 -2 8 995 587 119 193 0 chr11 53867090 53867199 -67976657 - B3 SINE B2 -86 130 1 8 995 276 30 0 0 chr11 53867593 53867626 -67976230 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 8 995 234 0 0 0 chr11 53868109 53868135 -67975721 + (T)n Simple_repeat Simple_repeat 1 26 0 9 995 183 239 65 0 chr11 53868314 53868360 -67975496 + L2a LINE L2 3339 3387 -39 9 995 297 0 0 0 chr11 53870402 53870435 -67973421 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 996 321 219 17 9 chr11 53870622 53870737 -67973119 + (TA)n Simple_repeat Simple_repeat 2 117 0 9 996 221 0 35 0 chr11 53874341 53874370 -67969486 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 9 996 558 207 154 8 chr11 53874370 53874487 -67969369 - B1_Mur2 SINE Alu -14 135 2 9 996 229 206 43 11 chr11 53876519 53876612 -67967244 + GA-rich Low_complexity Low_complexity 4 99 0 9 996 431 314 0 28 chr11 53876801 53876909 -67966947 - PB1D10 SINE Alu -2 115 11 9 996 331 353 0 19 chr11 53876821 53876925 -67966931 - ID_B1 SINE B4 -45 179 78 9 996 270 0 0 0 chr11 53878482 53878512 -67965344 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 996 213 39 0 0 chr11 53878586 53878612 -67965244 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 996 858 120 0 8 chr11 53878613 53878747 -67965109 - B1_Mus1 SINE Alu -12 136 4 9 996 720 201 135 32 chr11 53878749 53878934 -67964922 - B4A SINE B4 -87 205 2 9 996 408 258 0 40 chr11 53878934 53879034 -67964822 - B4A SINE B4 -196 96 1 9 996 297 341 84 38 chr11 53879591 53879722 -67964134 - MIR SINE MIR -118 144 8 9 996 199 349 66 37 chr11 53879740 53879981 -67963875 - L2 LINE L2 -340 3079 2832 9 996 213 289 145 0 chr11 53880250 53880326 -67963530 + MIR SINE MIR 99 185 -77 9 996 232 229 11 46 chr11 53882480 53882567 -67961289 + C-rich Low_complexity Low_complexity 3 86 0 9 996 200 250 12 111 chr11 53885016 53885097 -67958759 - L2c LINE L2 -3 3384 3312 9 996 208 235 162 0 chr11 53885085 53885153 -67958703 + L2b LINE L2 3255 3333 -42 9 996 361 339 36 18 chr11 53887272 53887440 -67956416 - MTEa LTR MaLR -30 349 179 9 996 708 275 0 27 chr11 53887465 53887648 -67956208 - MTEa LTR MaLR -196 183 6 9 996 230 210 97 0 chr11 53888302 53888364 -67955492 - L2a LINE L2 -1 3425 3358 9 996 180 162 107 93 chr11 53888320 53888395 -67955461 - MIR SINE MIR -13 249 174 9 996 578 267 143 11 chr11 53888632 53888821 -67955035 - ID_B1 SINE B4 -7 217 4 9 996 336 376 88 52 chr11 53889490 53889818 -67954038 + MamGypLTR3 LTR Gypsy 169 508 -331 9 996 315 0 0 0 chr11 53890091 53890126 -67953730 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 996 2310 63 51 0 chr11 53890233 53890568 -67953288 + MTA_Mm-int LTR MaLR 746 1097 -1 9 996 3476 20 2 20 chr11 53890569 53890972 -67952884 + MTA_Mm LTR MaLR 1 396 0 9 996 4473 135 31 74 chr11 53890973 53891855 -67952001 + ORR1B1-int LTR MaLR 1120 1963 0 9 996 2199 145 56 56 chr11 53891855 53892249 -67951607 + ORR1B1 LTR MaLR 1 394 0 9 996 749 325 79 67 chr11 53892250 53892804 -67951052 + Lx8 LINE L1 6910 7470 -3 9 996 462 36 0 0 chr11 53892888 53892944 -67950912 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 996 423 0 0 0 chr11 53892944 53892990 -67950866 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 996 578 270 112 104 chr11 53893012 53893342 -67950514 - ORR1E LTR MaLR -7 372 2 9 996 626 193 8 34 chr11 53893420 53893538 -67950318 + PB1D7 SINE Alu 5 119 -1 9 996 542 221 30 60 chr11 53893723 53893913 -67949943 - B3 SINE B2 0 195 17 9 996 885 261 133 72 chr11 53893950 53894297 -67949559 - MTEa LTR MaLR -9 370 3 9 996 288 0 0 0 chr11 53894456 53894488 -67949368 + (TC)n Simple_repeat Simple_repeat 1 32 0 9 996 627 71 0 0 chr11 53894488 53894573 -67949283 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 996 553 264 96 13 chr11 53894591 53894748 -67949108 - B4A SINE B4 0 292 123 9 996 484 280 73 48 chr11 53894807 53894931 -67948925 - B3 SINE B2 -84 132 6 9 996 723 267 108 9 chr11 53894924 53895136 -67948720 - B4A SINE B4 -59 233 1 9 996 412 252 42 67 chr11 53895134 53895253 -67948603 - PB1D10 SINE Alu -1 116 1 9 996 325 234 71 24 chr11 53895373 53895627 -67948229 - L1MC4 LINE L1 -1163 6879 6614 9 996 252 143 0 0 chr11 53895627 53895669 -67948187 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 996 312 333 0 13 chr11 53895702 53895781 -67948075 - B4 SINE B4 0 292 215 9 996 1084 215 25 0 chr11 53895819 53896019 -67947837 - B3 SINE B2 -7 209 5 9 996 974 280 39 4 chr11 53896019 53896242 -67947614 - B4 SINE B4 -58 234 4 9 996 2321 103 6 3 chr11 53896582 53896903 -67946953 + ORR1A2 LTR MaLR 6 327 0 9 996 231 125 0 0 chr11 53896927 53896967 -67946889 + (CAA)n Simple_repeat Simple_repeat 3 42 0 9 996 266 283 22 0 chr11 53897296 53897388 -67946468 + L1MEg LINE L1 2 95 -5975 9 996 658 201 162 6 chr11 53897388 53897548 -67946308 + ID_B1 SINE B4 2 186 -38 9 996 913 84 13 0 chr11 53897984 53898138 -67945718 + (GA)n Simple_repeat Simple_repeat 1 156 0 9 996 348 321 92 7 chr11 53898138 53898274 -67945582 + HAL1-3A_ME LINE L1 1982 2129 -729 9 996 350 267 160 80 chr11 53898383 53898595 -67945261 + L1MEg LINE L1 712 940 -5236 9 996 947 289 28 7 chr11 53898597 53898883 -67944973 + B4A SINE B4 1 292 0 9 996 255 290 0 0 chr11 53898883 53898983 -67944873 + (CA)n Simple_repeat Simple_repeat 1 100 0 9 996 409 288 235 53 chr11 53898998 53899419 -67944437 + L1MEg LINE L1 962 1460 -4716 9 996 759 195 14 104 chr11 53899419 53899631 -67944225 - B3A SINE B2 -5 193 1 9 996 236 291 157 57 chr11 53899631 53899841 -67944015 + L1MEg LINE L1 1461 1690 -4486 9 996 696 233 109 12 chr11 53900238 53900273 -67943583 - B3A SINE B2 -16 182 149 9 996 369 0 0 0 chr11 53900273 53900314 -67943542 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 996 696 233 109 12 chr11 53900314 53900443 -67943413 - B3A SINE B2 -50 148 2 9 996 1207 204 193 3 chr11 53900790 53900944 -67942912 - ORR1D1 LTR MaLR -9 365 159 9 996 606 28 0 0 chr11 53900944 53901016 -67942840 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 996 1207 204 193 3 chr11 53901016 53901151 -67942705 - ORR1D1 LTR MaLR -216 158 22 9 996 1574 224 127 74 chr11 53901690 53901788 -67942068 + Lx7 LINE L1 5247 5342 -538 9 996 234 0 0 0 chr11 53901788 53901814 -67942042 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 996 1574 226 117 79 chr11 53901814 53902495 -67941361 + Lx7 LINE L1 5343 6084 -1612 9 996 393 22 0 0 chr11 53903056 53903102 -67940754 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 9 996 658 211 186 0 chr11 53903103 53903264 -67940592 - B3 SINE B2 -17 199 9 9 996 2043 62 17 68 chr11 53903415 53903710 -67940146 - ORR1A2 LTR MaLR -47 280 1 9 996 363 44 0 0 chr11 53903743 53903788 -67940068 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 996 286 301 49 102 chr11 53903888 53904114 -67939742 + ORSL-2a DNA Tip100 105 318 -24 9 996 640 245 21 21 chr11 53906096 53906238 -67937618 + RSINE1 SINE B4 2 143 -22 9 996 527 103 0 22 chr11 53906847 53906936 -67936920 + (TATG)n Simple_repeat Simple_repeat 2 88 0 9 996 511 218 160 77 chr11 53907493 53907564 -67936292 + RMER30 DNA MER1_type 19 87 -115 9 996 441 0 0 0 chr11 53907564 53907613 -67936243 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 996 511 218 160 77 chr11 53907613 53907710 -67936146 + RMER30 DNA MER1_type 88 200 -2 9 996 373 209 164 10 chr11 53908052 53908131 -67935725 + L1M2 LINE L1 3085 3165 -2981 9 996 1298 228 146 6 chr11 53908131 53908453 -67935403 - ORR1D2 LTR MaLR -1 369 3 9 996 373 258 144 42 chr11 53908453 53908557 -67935299 + L1M2 LINE L1 3166 3283 -2863 9 996 1175 226 52 22 chr11 53908658 53908930 -67934926 + MTEa LTR MaLR 1 280 -99 9 996 662 288 38 25 chr11 53908957 53909189 -67934667 + MTEa LTR MaLR 151 379 0 9 996 13724 123 33 17 chr11 53909256 53912081 -67931775 + Lx3C LINE L1 3469 6334 -642 9 996 4555 8 0 0 chr11 53912081 53912574 -67931282 + MT2_Mm LTR ERVL 1 493 0 9 996 8070 112 48 19 chr11 53912574 53913191 -67930665 + Lx3C LINE L1 6335 6976 0 9 996 23 0 0 0 chr11 53913197 53913220 -67930636 + AT_rich Low_complexity Low_complexity 1 23 0 9 996 564 15 0 0 chr11 53913453 53913518 -67930338 + (GGA)n Simple_repeat Simple_repeat 2 66 0 9 996 214 252 29 39 chr11 53914407 53914510 -67929346 + G-rich Low_complexity Low_complexity 4 105 0 9 996 396 289 42 76 chr11 53917703 53917889 -67925967 - MIRb SINE MIR -62 206 28 9 996 4503 12 2 0 chr11 53918133 53918625 -67925231 - MT2_Mm LTR ERVL 0 493 1 9 996 1186 308 138 19 chr11 53918732 53919218 -67924638 + MER44B DNA MER2_type 7 550 0 9 996 605 224 98 17 chr11 53919308 53919502 -67924354 - LTR16D LTR ERVL 0 651 367 9 996 230 262 70 70 chr11 53921859 53921974 -67921882 - RLTR23 LTR ERV1 -278 152 38 9 996 210 301 27 0 chr11 53922709 53922782 -67921074 + L2b LINE L2 3297 3371 -4 9 996 534 252 3 3 chr11 53923303 53923422 -67920434 + PB1D10 SINE Alu 1 117 0 9 996 309 209 165 0 chr11 53923567 53923658 -67920198 - PB1D10 SINE Alu -1 116 11 9 996 814 187 120 21 chr11 53925297 53925488 -67918368 + B3 SINE B2 1 210 -6 9 996 631 300 23 94 chr11 53925520 53925829 -67918027 + B4A SINE B4 2 288 -4 9 996 251 378 37 11 chr11 53929051 53929241 -67914615 + L2 LINE L2 2278 2472 -947 9 996 277 286 131 25 chr11 53929788 53929910 -67913946 - MIRc SINE MIR -104 164 30 9 996 202 245 103 94 chr11 53930676 53930793 -67913063 + MIRm SINE MIR 93 210 -66 9 996 560 221 134 27 chr11 53932061 53932210 -67911646 - RSINE1 SINE B4 0 165 1 9 996 288 307 0 24 chr11 53934086 53934256 -67909600 + G-rich Low_complexity Low_complexity 6 171 0 9 996 513 0 0 0 chr11 53934519 53934576 -67909280 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 9 996 1236 32 56 19 chr11 53934576 53934728 -67909128 - B2_Mm2 SINE B2 -34 161 1 9 996 723 249 78 55 chr11 53934734 53934780 -67909076 - ID_B1 SINE B4 0 224 180 9 996 525 44 0 0 chr11 53934780 53934848 -67909008 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 9 996 723 249 78 55 chr11 53934848 53935018 -67908838 - ID_B1 SINE B4 -45 179 3 9 996 358 314 173 19 chr11 53935128 53935394 -67908462 - L1M4 LINE L1 -1873 4273 3967 9 996 266 337 38 95 chr11 53937149 53937359 -67906497 + L2c LINE L2 3181 3378 -9 9 996 219 204 0 0 chr11 53937557 53937606 -67906250 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 996 243 0 0 0 chr11 53937955 53937982 -67905874 + (TGGGGG)n Simple_repeat Simple_repeat 5 31 0 1 996 367 271 148 26 chr11 53938632 53938787 -67905069 - MTEb LTR MaLR 0 379 206 1 996 249 266 0 72 chr11 53938840 53938909 -67904947 - MTEb LTR MaLR -264 95 32 1 996 506 293 162 24 chr11 53938899 53939109 -67904747 + B4A SINE B4 45 283 -9 1 996 450 257 31 36 chr11 53940126 53940320 -67903536 - L1MB3 LINE L1 -2 6181 5989 1 996 234 75 0 70 chr11 53941260 53941317 -67902539 + (CAAAA)n Simple_repeat Simple_repeat 4 56 0 1 996 363 44 0 0 chr11 53941554 53941599 -67902257 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1 996 789 175 8 13 chr11 53941599 53941820 -67902036 + CT-rich Low_complexity Low_complexity 1 220 0 1 996 648 246 54 166 chr11 53941871 53942060 -67901796 - B3 SINE B2 -13 203 27 1 996 1682 54 0 0 chr11 53942060 53942263 -67901593 - L1_Mus1 LINE L1 -3 6564 6362 1 996 520 246 54 181 chr11 53942263 53942295 -67901561 - B3A SINE B2 -162 36 5 1 996 447 35 0 0 chr11 53943869 53943926 -67899930 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 996 363 297 0 0 chr11 53943928 53944019 -67899837 - RSINE1 SINE B4 -21 144 54 1 996 217 154 15 44 chr11 53945167 53945235 -67898621 + T-rich Low_complexity Low_complexity 3 68 0 1 996 1163 68 7 0 chr11 53945274 53945420 -67898436 + B1_Mus2 SINE Alu 1 147 0 1 996 927 267 15 37 chr11 53945427 53945699 -67898157 + B4A SINE B4 27 292 0 1 996 1015 329 65 12 chr11 53946296 53946792 -67897064 - MT2A LTR ERVL -11 522 1 1 996 356 240 66 19 chr11 53947083 53947189 -67896667 + MLT1A0 LTR MaLR 1 111 -254 1 996 2531 121 58 2 chr11 53947215 53947614 -67896242 - MTC LTR MaLR 0 421 1 1 996 800 176 249 17 chr11 53947628 53947801 -67896055 - B3 SINE B2 -3 213 1 1 996 370 354 99 0 chr11 53947834 53948026 -67895830 + MLT1A0 LTR MaLR 140 350 -15 1 996 519 283 69 41 chr11 53948192 53948483 -67895373 - L1MEg LINE L1 -4766 2567 2269 1 996 216 265 14 14 chr11 53948614 53948683 -67895173 + CT-rich Low_complexity Low_complexity 1 69 0 1 996 267 219 27 27 chr11 53948694 53948769 -67895087 - ID4_ SINE ID -8 75 1 1 996 575 130 227 17 chr11 53948766 53948926 -67894930 - B3A SINE B2 0 195 1 1 996 222 37 0 0 chr11 53948931 53948958 -67894898 + (T)n Simple_repeat Simple_repeat 1 27 0 1 996 810 89 0 0 chr11 53948958 53949070 -67894786 - L1_Mur2 LINE L1 -1394 4483 4372 1 996 9192 9 0 0 chr11 53949066 53950779 -67893077 - L1Md_T LINE L1 0 6582 4870 1 996 16916 24 0 0 chr11 53950771 53952738 -67891118 + L1Md_T LINE L1 2911 4877 -1006 1 996 954 106 0 0 chr11 53952850 53952991 -67890865 + (TCTCCC)n Simple_repeat Simple_repeat 2 142 0 1 996 266 327 37 37 chr11 53953418 53953526 -67890330 - L1MEg LINE L1 -5787 448 341 1 996 1298 108 6 0 chr11 53953644 53953820 -67890036 + B2_Mm1t SINE B2 1 177 -16 1 996 351 121 0 0 chr11 53953822 53953880 -67889976 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1 996 620 26 0 13 chr11 53954159 53954238 -67889618 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 996 878 169 130 16 chr11 53954803 53954995 -67888861 - B3 SINE B2 -1 215 2 1 996 189 0 0 0 chr11 53955003 53955024 -67888832 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 996 267 103 0 0 chr11 53955092 53955131 -67888725 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1 996 182 254 62 78 chr11 53955487 53955551 -67888305 - MIR SINE MIR -182 80 18 1 996 197 86 57 0 chr11 53955718 53955753 -67888103 + (AGGGGG)n Simple_repeat Simple_repeat 6 42 0 1 996 442 264 107 58 chr11 53956425 53956686 -67887170 + MTD LTR MaLR 18 291 -128 1 996 919 158 0 0 chr11 53956689 53956828 -67887028 - B1_Mus2 SINE Alu -7 140 2 1 996 251 143 35 35 chr11 53956828 53956886 -67886970 + MTD LTR MaLR 304 379 0 1 996 359 297 70 13 chr11 53957002 53957159 -67886697 - MLT1B LTR MaLR -12 378 213 1 996 1672 221 59 32 chr11 53957224 53957716 -67886140 - RLTR16 LTR ERVK 0 505 1 1 996 225 0 0 0 chr11 53957737 53957762 -67886094 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 996 949 167 81 0 chr11 53957762 53957972 -67885884 - MYSERV16_I-int LTR ERVK -28 2298 2072 1 996 227 31 31 0 chr11 53959125 53959157 -67884699 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 1 996 540 45 0 0 chr11 53959375 53959442 -67884414 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 996 269 261 0 68 chr11 53959442 53959516 -67884340 - B1F1 SINE Alu -16 133 65 1 996 248 151 16 131 chr11 53959489 53959550 -67884306 - B1_Mur1 SINE Alu -29 120 67 1 996 1113 235 62 91 chr11 53960055 53960439 -67883417 + MTE2a LTR MaLR 1 373 -6 1 996 516 245 9 0 chr11 53960995 53961101 -67882755 + PB1D7 SINE Alu 1 107 -13 1 996 226 290 137 55 chr11 53961138 53961284 -67882572 + MTEb LTR MaLR 58 215 -164 1 996 536 29 14 0 chr11 53961384 53961454 -67882402 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 996 344 250 27 67 chr11 53961892 53962042 -67881814 + MTEa LTR MaLR 45 188 -191 1 996 207 0 0 0 chr11 53962045 53962068 -67881788 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 996 748 257 5 37 chr11 53962068 53962165 -67881691 + MTEa LTR MaLR 168 259 -120 1 996 1464 188 149 12 chr11 53962165 53962494 -67881362 + ORR1D1 LTR MaLR 1 374 0 1 996 748 259 6 46 chr11 53962494 53962618 -67881238 + MTEa LTR MaLR 260 375 -4 1 996 863 319 25 19 chr11 53962695 53963014 -67880842 - Lx8 LINE L1 -186 7287 6967 1 996 769 126 12 9 chr11 53963015 53963152 -67880704 - ORR1A2 LTR MaLR -210 184 1 1 996 276 274 0 64 chr11 53963176 53963254 -67880602 - RMER15-int LTR ERVL -456 4543 4471 1 996 478 273 44 35 chr11 53963352 53963580 -67880276 - L2 LINE L2 -630 2789 2560 1 996 629 172 151 28 chr11 53963866 53964045 -67879811 + RMER4B LTR ERVK 46 246 -339 1 996 357 186 0 0 chr11 53964489 53964559 -67879297 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 996 187 343 52 15 chr11 53964929 53965065 -67878791 + MIRb SINE MIR 67 207 -61 1 996 773 172 185 22 chr11 53965126 53965310 -67878546 + B3 SINE B2 3 216 0 1 996 1216 54 0 0 chr11 53965331 53965479 -67878377 + B1_Mus1 SINE Alu 1 148 0 1 996 771 222 78 0 chr11 53966184 53966351 -67877505 - B3A SINE B2 -18 180 1 1 996 244 219 30 30 chr11 53966820 53966886 -67876970 + MTE2a LTR MaLR 2 67 -352 1 996 456 67 0 0 chr11 53966890 53966950 -67876906 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 996 604 198 29 18 chr11 53968135 53968297 -67875559 + MTE2a LTR MaLR 57 240 -179 1 996 506 263 168 0 chr11 53969529 53969719 -67874137 + LTR50 LTR ERVL 42 263 -532 1 996 1237 230 34 38 chr11 53969928 53969958 -67873898 - B4 SINE B4 0 292 270 1 996 297 0 0 0 chr11 53969958 53969991 -67873865 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 996 1237 230 34 38 chr11 53969991 53970253 -67873603 - B4 SINE B4 -23 269 1 1 996 1109 62 13 33 chr11 53970827 53970978 -67872878 + B1_Mus1 SINE Alu 1 148 0 1 996 308 43 22 0 chr11 53970980 53971026 -67872830 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 996 311 295 139 0 chr11 53971044 53971166 -67872690 + L1M4 LINE L1 1187 1325 -5579 1 996 492 282 66 62 chr11 53971271 53971543 -67872313 + L1M4 LINE L1 1441 1762 -5142 1 996 246 32 0 0 chr11 53971543 53971574 -67872282 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 996 492 286 117 44 chr11 53971574 53971742 -67872114 + L1M4 LINE L1 1763 1940 -4964 1 996 222 118 0 0 chr11 53971878 53971912 -67871944 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 1 996 294 342 49 35 chr11 53971926 53972129 -67871727 + L1M4 LINE L1 3448 3653 -3353 1 996 690 215 0 22 chr11 53972152 53972290 -67871566 - B1_Mur2 SINE Alu -13 136 2 1 996 22 0 0 0 chr11 53974288 53974310 -67869546 + AT_rich Low_complexity Low_complexity 1 22 0 1 996 392 316 38 112 chr11 53974385 53974877 -67868979 + L1M4 LINE L1 3669 4147 -2859 1 996 2143 283 81 38 chr11 53975011 53975877 -67867979 - Lx9 LINE L1 -182 7462 6560 1 996 330 326 0 0 chr11 53975878 53975967 -67867889 - B3A SINE B2 -105 93 5 1 996 778 131 64 21 chr11 53976137 53976278 -67867578 - B1_Mus1 SINE Alu -1 147 1 1 996 212 300 14 0 chr11 53977053 53977123 -67866733 + ID4 SINE ID 4 74 -9 1 996 32 43 0 0 chr11 53977519 53977565 -67866291 + AT_rich Low_complexity Low_complexity 1 46 0 1 996 847 278 110 31 chr11 53978369 53978696 -67865160 - ORR1E LTR MaLR -6 353 1 1 996 727 277 125 73 chr11 53979026 53979341 -67864515 + MLT1A0 LTR MaLR 1 336 -29 1 996 1747 216 88 3 chr11 53979341 53979727 -67864129 + MTD LTR MaLR 1 419 0 1 996 727 277 125 73 chr11 53979727 53979754 -67864102 + MLT1A0 LTR MaLR 337 361 -4 1 996 275 193 0 0 chr11 53979988 53980042 -67863814 - B3A SINE B2 -109 89 36 1 996 216 0 0 0 chr11 53980146 53980170 -67863686 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 996 476 270 17 0 chr11 53980193 53980308 -67863548 - B4A SINE B4 -174 118 2 1 996 449 236 27 0 chr11 53980808 53980918 -67862938 - PB1D7 SINE Alu -7 113 1 1 996 312 27 0 0 chr11 53981366 53981403 -67862453 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 996 833 270 8 79 chr11 53981404 53981606 -67862250 - B4 SINE B4 -15 277 82 1 996 1192 198 0 5 chr11 53981606 53981819 -67862037 + B3 SINE B2 1 212 -4 1 996 833 270 8 79 chr11 53981819 53981869 -67861987 - B4 SINE B4 -211 81 43 1 996 612 151 0 0 chr11 53982001 53982147 -67861709 + C-rich Low_complexity Low_complexity 1 146 0 1 996 429 20 0 0 chr11 53982289 53982339 -67861517 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 996 717 250 7 0 chr11 53982348 53982496 -67861360 - RSINE1 SINE B4 -14 151 3 1 996 50 71 0 0 chr11 53982659 53982758 -67861098 + AT_rich Low_complexity Low_complexity 1 99 0 1 996 844 302 105 34 chr11 53982879 53983034 -67860822 + L1M5 LINE L1 3624 3790 -2356 1 996 1204 220 34 110 chr11 53983034 53983442 -67860414 + MTE2a LTR MaLR 3 379 0 1 996 844 302 105 34 chr11 53983442 53983934 -67859922 + L1M5 LINE L1 3791 4317 -1829 1 996 245 213 0 0 chr11 53983966 53984013 -67859843 - PB1D9 SINE Alu -56 64 18 1 996 221 224 161 17 chr11 53984034 53984152 -67859704 - B4 SINE B4 -155 137 3 1 996 371 346 129 50 chr11 53984221 53984917 -67858939 - L1MC4 LINE L1 -4991 1224 474 1 996 788 191 13 45 chr11 53985110 53985264 -67858592 + B1_Mur1 SINE Alu 1 149 0 1 996 923 199 98 132 chr11 53985449 53985517 -67858339 - MTD LTR MaLR 0 419 354 1 996 442 179 52 10 chr11 53985517 53985613 -67858243 - Lx4B LINE L1 -3 7055 6956 1 996 923 199 98 132 chr11 53985613 53985839 -67858017 - MTD LTR MaLR -66 353 135 1 996 670 167 22 7 chr11 53985842 53985981 -67857875 - URR1B DNA MER1_type -2 223 83 1 996 687 129 41 96 chr11 53986027 53986077 -67857779 - MTD LTR MaLR -283 138 87 1 996 1404 84 11 5 chr11 53986077 53986268 -67857588 - B2_Mm2 SINE B2 -1 194 3 1 996 687 129 41 96 chr11 53986268 53986363 -67857493 - MTD LTR MaLR -335 86 1 1 996 307 360 26 21 chr11 53986363 53986554 -67857302 - Charlie2a DNA MER1_type -2503 358 167 1 996 1181 115 16 117 chr11 53986850 53987097 -67856759 + RMER19B LTR ERVK 1 222 -680 1 996 2369 157 69 43 chr11 53987123 53987661 -67856195 + RMER19B LTR ERVK 339 890 -12 1 996 400 301 68 0 chr11 53987680 53987826 -67856030 + RSINE1 SINE B4 2 157 -8 1 996 773 173 7 0 chr11 53987826 53987965 -67855891 - B3A SINE B2 -57 141 2 1 996 567 270 62 123 chr11 53988361 53988404 -67855452 - B4A SINE B4 0 292 246 1 996 347 0 0 23 chr11 53988404 53988448 -67855408 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 996 567 270 62 123 chr11 53988448 53988712 -67855144 - B4A SINE B4 -47 245 4 1 996 24 0 0 0 chr11 53989888 53989912 -67853944 + AT_rich Low_complexity Low_complexity 1 24 0 1 996 454 239 149 0 chr11 53989924 53990058 -67853798 - ID_B1 SINE B4 -70 154 1 1 996 429 289 123 13 chr11 53990144 53990372 -67853484 - L1MA4 LINE L1 -128 6172 5920 1 996 216 0 0 0 chr11 53990807 53990831 -67853025 + (TTA)n Simple_repeat Simple_repeat 3 26 0 1 996 279 0 0 0 chr11 53990831 53990862 -67852994 + (TAG)n Simple_repeat Simple_repeat 1 31 0 1 996 318 309 36 0 chr11 53990870 53990954 -67852902 - RSINE1 SINE B4 -15 150 64 1 996 1438 255 38 30 chr11 53991399 53991795 -67852061 - Lx8 LINE L1 -319 7154 6756 1 996 1023 251 58 12 chr11 53991814 53992072 -67851784 - Lx8 LINE L1 -803 6670 6401 1 996 226 219 0 0 chr11 53992799 53992865 -67850991 + polypyrimidine Low_complexity Low_complexity 1 66 0 1 996 636 20 0 56 chr11 53992865 53992973 -67850883 + (TTCTC)n Simple_repeat Simple_repeat 5 106 0 1 996 541 234 0 2 chr11 53992977 53993088 -67850768 - B1F SINE Alu -40 109 1 1 996 189 348 51 0 chr11 53993135 53993253 -67850603 - L2a LINE L2 -3 3423 3300 1 996 528 285 62 12 chr11 53993401 53993561 -67850295 + B4 SINE B4 40 207 -85 1 996 504 0 0 0 chr11 53993563 53993619 -67850237 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 996 529 246 28 57 chr11 53993619 53993794 -67850062 + B3A SINE B2 9 183 -10 1 996 230 319 43 0 chr11 53993788 53993857 -67849999 + B4 SINE B4 213 284 -8 1 996 253 184 41 0 chr11 53993877 53993926 -67849930 - MER4B-int LTR ERV1 -5570 1188 1138 1 996 43 71 0 0 chr11 53994162 53994247 -67849609 + AT_rich Low_complexity Low_complexity 1 85 0 1 996 4046 75 4 9 chr11 53994400 53994928 -67848928 - L1_Mus1 LINE L1 0 6567 6043 1 996 510 273 135 11 chr11 53995411 53995596 -67848260 + MER3 DNA MER1_type 1 208 -1 1 996 339 239 0 0 chr11 53996190 53996278 -67847578 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1 996 730 230 21 53 chr11 53996278 53996466 -67847390 - B3A SINE B2 -16 182 1 1 996 495 234 37 0 chr11 53996483 53996590 -67847266 - L1M4 LINE L1 -748 5436 5326 1 996 324 89 107 0 chr11 53996777 53996833 -67847023 - HAL1-3A_ME LINE L1 -820 2038 1977 1 996 384 200 0 0 chr11 53996834 53996914 -67846942 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 996 978 185 90 0 chr11 53996915 53997104 -67846752 - B3 SINE B2 -9 207 2 1 996 436 281 29 15 chr11 53997529 53997666 -67846190 - B4A SINE B4 -152 140 2 1 996 296 274 11 17 chr11 53997946 53998124 -67845732 + CT-rich Low_complexity Low_complexity 2 178 0 1 996 422 252 108 0 chr11 53998633 53998744 -67845112 - RSINE1 SINE B4 -39 126 4 1 996 260 172 31 15 chr11 53998744 53998809 -67845047 - L1MC LINE L1 -1742 4404 4339 1 996 387 41 0 0 chr11 53999070 53999119 -67844737 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 996 665 242 13 7 chr11 53999129 53999279 -67844577 - B3A SINE B2 -44 154 4 1 996 729 296 30 11 chr11 53999549 53999852 -67844004 - L1M4 LINE L1 -3169 2977 2664 1 996 422 275 46 0 chr11 54000021 54000130 -67843726 - PB1D10 SINE Alu -3 114 1 1 996 322 231 50 13 chr11 54000145 54000337 -67843519 - L1M4b LINE L1 -3676 3658 3608 2 996 437 218 40 98 chr11 54000346 54000519 -67843337 - RSINE1 SINE B4 -2 163 1 3 996 261 0 0 0 chr11 54000687 54000716 -67843140 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 996 494 322 0 7 chr11 54000730 54000880 -67842976 - RSINE1 SINE B4 -16 149 1 5 124 1920 285 76 50 chr11 54000891 54001836 -67842020 - L1MC2 LINE L1 -15 6329 5360 6 997 365 167 13 0 chr11 54001847 54001925 -67841931 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 997 657 306 11 53 chr11 54001962 54002152 -67841704 - B3 SINE B2 -34 182 1 8 997 1517 284 48 54 chr11 54002262 54002929 -67840927 + L1MC1 LINE L1 1 663 -5845 9 997 525 373 19 19 chr11 54002970 54003238 -67840618 - B4A SINE B4 -24 268 1 1 997 257 264 43 21 chr11 54003250 54003343 -67840513 + L1MC1 LINE L1 843 937 -5571 9 997 225 239 154 68 chr11 54003594 54003636 -67840220 - RMER30 DNA MER1_type -65 137 92 1 997 333 0 0 0 chr11 54003636 54003673 -67840183 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 997 225 239 154 68 chr11 54003673 54003747 -67840109 - RMER30 DNA MER1_type -111 91 13 1 997 237 259 164 42 chr11 54004068 54004233 -67839623 - RLTR45 LTR ERVK -5 477 293 1 997 772 214 8 0 chr11 54004459 54004585 -67839271 - ETnERV2-int LTR ERVK -210 7196 7070 1 997 1077 108 134 20 chr11 54004777 54005007 -67838849 - ORR1A4 LTR MaLR -90 304 1 1 997 645 25 0 0 chr11 54005024 54005103 -67838753 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 1 997 560 309 33 27 chr11 54005145 54005328 -67838528 - B4 SINE B4 -108 184 1 1 997 433 297 68 104 chr11 54005616 54005753 -67838103 + L1MC1 LINE L1 1971 2085 -4423 9 997 210 37 0 0 chr11 54005753 54005780 -67838076 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 997 433 297 68 104 chr11 54005780 54005950 -67837906 + L1MC1 LINE L1 2086 2267 -4241 9 997 386 236 55 1 chr11 54005966 54006067 -67837789 + L1MC1 LINE L1 5733 5837 -682 9 997 2560 232 142 6 chr11 54006112 54006776 -67837080 + Lx8 LINE L1 6285 7038 -435 1 997 653 205 163 7 chr11 54006782 54006981 -67836875 + MT2A LTR ERVL 341 601 0 2 997 624 299 177 29 chr11 54007037 54007584 -67836272 + L1MC1 LINE L1 5836 6463 -45 9 997 432 0 0 0 chr11 54007608 54007656 -67836200 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 997 685 228 212 0 chr11 54007862 54008051 -67835805 - MTEa LTR MaLR 0 379 151 2 997 262 203 197 26 chr11 54008068 54008084 -67835772 - MT2A LTR ERVL -439 94 6 2 997 345 200 17 0 chr11 54008084 54008144 -67835712 - MTEa LTR MaLR -313 66 6 2 997 745 230 94 0 chr11 54008219 54008410 -67835446 - B3 SINE B2 -6 210 2 2 997 290 223 320 0 chr11 54008411 54008514 -67835342 - MER2 DNA MER2_type -122 223 88 2 997 295 250 54 71 chr11 54008616 54008728 -67835128 - MER2B DNA MER2_type -171 165 56 2 997 390 233 170 108 chr11 54008701 54008942 -67834914 - MLT1A1 LTR MaLR -55 310 55 2 997 25 31 0 0 chr11 54009330 54009362 -67834494 + AT_rich Low_complexity Low_complexity 1 32 0 2 997 293 325 46 46 chr11 54010038 54010131 -67833725 - L1MCc LINE L1 -6151 272 175 2 997 689 98 185 54 chr11 54010131 54010145 -67833711 - B1_Mus2 SINE Alu 0 147 138 3 997 225 0 0 0 chr11 54010145 54010170 -67833686 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 997 689 98 185 54 chr11 54010170 54010285 -67833571 - B1_Mus2 SINE Alu -10 137 1 3 997 293 325 46 46 chr11 54010285 54010430 -67833426 - L1MCc LINE L1 -6249 174 34 2 997 212 122 24 0 chr11 54010519 54010560 -67833296 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 997 775 233 183 4 chr11 54010596 54010837 -67833019 - B4A SINE B4 -5 287 4 3 997 560 275 5 27 chr11 54011410 54011597 -67832259 + L1MA4 LINE L1 4503 4685 -1458 3 997 1305 199 111 53 chr11 54011759 54012198 -67831658 + RLTR20B3 LTR ERVK 83 560 0 3 997 293 308 16 40 chr11 54012542 54012667 -67831189 + RMER3D-int LTR ERVK 176 297 -2545 3 997 330 277 0 75 chr11 54013358 54013462 -67830394 + L1MA4 LINE L1 5109 5206 -937 3 997 962 135 162 25 chr11 54013462 54013660 -67830196 + URR1B DNA MER1_type 1 225 0 3 997 330 277 0 75 chr11 54013660 54013715 -67830141 + L1MA4 LINE L1 5207 5256 -887 3 997 723 156 0 0 chr11 54013718 54013859 -67829997 + (TA)n Simple_repeat Simple_repeat 2 142 0 3 997 1494 286 69 29 chr11 54013859 54014559 -67829297 + L1MA4 LINE L1 5306 6014 -170 3 997 458 146 0 82 chr11 54014668 54014765 -67829091 - URR1B DNA MER1_type -1 224 136 3 997 682 67 28 46 chr11 54014762 54014871 -67828985 - URR1B DNA MER1_type -31 194 88 3 997 1083 272 9 0 chr11 54015260 54015492 -67828364 + MTD LTR MaLR 46 279 -140 4 997 1300 222 42 149 chr11 54015907 54016331 -67827525 - MTE2a LTR MaLR 0 379 1 4 997 350 91 18 0 chr11 54017025 54017080 -67826776 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 997 298 250 0 15 chr11 54017087 54017152 -67826704 - B4A SINE B4 -8 284 221 4 997 4006 193 103 45 chr11 54017167 54018134 -67825722 - RMER1B Other Other -1 1065 43 4 997 788 285 37 25 chr11 54018140 54018381 -67825475 - B4A SINE B4 -25 267 24 4 997 1774 156 172 12 chr11 54018839 54019177 -67824679 - ORR1B1 LTR MaLR 0 394 3 4 997 2561 80 6 0 chr11 54019767 54020092 -67823764 - ORR1A2 LTR MaLR 0 327 1 4 997 1166 111 189 0 chr11 54021039 54021229 -67822627 - URR1A DNA MER1_type 0 226 1 4 997 1398 248 14 118 chr11 54023301 54023717 -67820139 - MTE2a LTR MaLR 0 379 7 4 997 281 348 41 53 chr11 54024434 54024604 -67819252 + MIR SINE MIR 23 190 -72 5 997 1170 137 16 0 chr11 54024648 54024830 -67819026 - URR1A DNA MER1_type 0 226 42 5 997 414 0 0 0 chr11 54024830 54024876 -67818980 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 997 1400 72 0 40 chr11 54024933 54025135 -67818721 - B2_Mm2 SINE B2 0 195 2 5 997 1118 202 5 19 chr11 54026083 54026295 -67817561 + ID_B1 SINE B4 1 209 -15 5 997 180 0 0 0 chr11 54026297 54026317 -67817539 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 997 825 143 13 45 chr11 54027651 54027805 -67816051 + B1_Mur2 SINE Alu 1 149 0 5 997 620 196 209 94 chr11 54029054 54029260 -67814596 + B4 SINE B4 10 254 -38 5 997 944 124 212 21 chr11 54029260 54029449 -67814407 + URR1B DNA MER1_type 1 225 0 5 997 620 196 209 94 chr11 54029449 54029496 -67814360 + B4 SINE B4 255 292 0 5 997 196 267 133 0 chr11 54031566 54031626 -67812230 - L2b LINE L2 0 3426 3359 5 997 659 224 7 14 chr11 54031669 54031814 -67812042 + B1_Mus2 SINE Alu 2 145 -2 6 997 1000 215 5 30 chr11 54031908 54032109 -67811747 + B3A SINE B2 3 198 0 6 997 2467 160 10 5 chr11 54032209 54032611 -67811245 - MTC LTR MaLR 0 421 18 6 997 449 289 276 10 chr11 54032692 54033281 -67810575 - L2b LINE L2 -224 3202 2443 5 997 674 266 135 6 chr11 54033287 54033465 -67810391 + ID_B1 SINE B4 2 202 -22 6 997 255 262 105 61 chr11 54033373 54033487 -67810369 + B1_Mur4 SINE Alu 32 150 0 6 997 441 81 0 0 chr11 54034161 54034223 -67809633 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 997 254 245 0 0 chr11 54034277 54034326 -67809530 - RSINE1 SINE B4 -114 51 3 6 997 568 302 104 16 chr11 54034713 54034895 -67808961 - B4 SINE B4 -12 280 83 6 997 763 193 210 0 chr11 54036201 54036377 -67807479 + ID_B1 SINE B4 4 216 -8 6 997 379 356 36 57 chr11 54036723 54036970 -67806886 + L2b LINE L2 3111 3352 -23 6 997 257 309 71 66 chr11 54037752 54037961 -67805895 + MIRc SINE MIR 2 208 -60 7 997 257 109 0 21 chr11 54038936 54038983 -67804873 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 7 997 357 24 0 0 chr11 54039306 54039348 -67804508 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 997 852 290 128 35 chr11 54039363 54039885 -67803971 - L1MA6 LINE L1 -1 6299 5729 7 997 252 351 63 0 chr11 54040004 54040115 -67803741 + LTR16A LTR ERVL 25 142 -309 7 997 450 321 111 0 chr11 54040142 54040332 -67803524 + LTR16A LTR ERVL 235 445 -6 7 997 435 310 129 27 chr11 54040385 54040489 -67803367 + HERV16-int LTR ERVL 43 162 -4834 7 997 956 146 6 12 chr11 54040489 54040655 -67803201 + Lx4A LINE L1 6891 7055 -3 7 997 435 310 129 27 chr11 54040655 54040845 -67803011 + HERV16-int LTR ERVL 163 367 -4629 7 997 296 278 133 42 chr11 54041241 54041361 -67802495 + MLT1A1 LTR MaLR 269 399 -9 7 997 729 162 173 13 chr11 54041660 54041816 -67802040 - MTD LTR MaLR -16 403 223 7 997 731 329 26 77 chr11 54041810 54042189 -67801667 - MT2A LTR ERVL -156 377 18 7 997 486 306 102 33 chr11 54042194 54042468 -67801388 + HERV16-int LTR ERVL 835 1127 -3869 7 997 475 365 93 17 chr11 54042554 54042844 -67801012 + HERV16-int LTR ERVL 1265 1576 -3420 7 997 824 269 6 35 chr11 54042876 54043049 -67800807 - B3 SINE B2 0 216 49 8 997 1024 248 94 107 chr11 54043120 54043454 -67800402 + MTE2a LTR MaLR 1 336 -43 8 997 1919 165 77 11 chr11 54043454 54043606 -67800250 + ORR1D1 LTR MaLR 1 164 -210 8 997 870 38 0 0 chr11 54043606 54043712 -67800144 + (TC)n Simple_repeat Simple_repeat 1 106 0 8 997 1919 165 77 11 chr11 54043712 54043909 -67799947 + ORR1D1 LTR MaLR 165 372 -2 8 997 1024 248 94 107 chr11 54043909 54043958 -67799898 + MTE2a LTR MaLR 337 379 0 8 997 462 36 0 0 chr11 54044145 54044201 -67799655 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 997 360 0 0 0 chr11 54044201 54044240 -67799616 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 997 189 0 0 0 chr11 54044241 54044262 -67799594 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 8 997 425 361 63 50 chr11 54044878 54045178 -67798678 + HERV16-int LTR ERVL 2792 3095 -1901 7 997 3984 184 42 21 chr11 54047378 54048138 -67795718 + Lx6 LINE L1 5973 6748 -712 8 997 1022 65 7 0 chr11 54048138 54048277 -67795579 + (GAA)n Simple_repeat Simple_repeat 2 141 0 8 997 1887 248 73 32 chr11 54048287 54048820 -67795036 + Lx6 LINE L1 6845 7399 -61 8 997 801 0 0 0 chr11 54048840 54048929 -67794927 + (GAGAA)n Simple_repeat Simple_repeat 1 89 0 8 997 745 387 40 30 chr11 54048987 54049357 -67794499 + LTR16A LTR ERVL 1 374 -77 9 997 422 96 0 14 chr11 54049459 54049533 -67794323 + (TG)n Simple_repeat Simple_repeat 1 73 0 9 997 290 284 0 24 chr11 54049534 54049617 -67794239 + (TATG)n Simple_repeat Simple_repeat 2 82 0 9 997 357 176 0 0 chr11 54050968 54051042 -67792814 + (TG)n Simple_repeat Simple_repeat 1 74 0 9 997 510 245 72 90 chr11 54051044 54051210 -67792646 - RSINE1 SINE B4 0 165 3 9 997 329 294 58 58 chr11 54052520 54052744 -67791112 + L1M5 LINE L1 5566 5789 -373 9 997 401 254 244 8 chr11 54052746 54052865 -67790991 + RSINE1 SINE B4 6 152 -13 9 997 1400 82 0 20 chr11 54053173 54053372 -67790484 + B2_Mm2 SINE B2 1 195 0 9 997 788 302 42 0 chr11 54054161 54054373 -67789483 - B4A SINE B4 -64 228 8 9 997 928 253 229 7 chr11 54054950 54055260 -67788596 - MTD LTR MaLR 0 419 41 9 997 363 252 116 122 chr11 54055105 54055286 -67788570 - MT2A LTR ERVL -353 180 1 1 997 205 336 58 3 chr11 54056172 54056295 -67787561 - MIRm SINE MIR -114 162 27 1 997 293 0 0 26 chr11 54057781 54057819 -67786037 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 997 231 103 0 0 chr11 54059439 54059478 -67784378 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 997 686 70 0 0 chr11 54059493 54059579 -67784277 + BC1_Mm scRNA scRNA 1 86 -66 1 997 227 178 22 0 chr11 54060129 54060174 -67783682 + B4 SINE B4 2 47 -245 1 997 305 75 0 19 chr11 54060827 54060881 -67782975 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 1 997 351 113 0 0 chr11 54064121 54064174 -67779682 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 997 334 264 189 8 chr11 54068487 54068609 -67775247 - RSINE1 SINE B4 -2 163 20 1 997 185 233 0 23 chr11 54069516 54069560 -67774296 + MIR SINE MIR 108 150 -112 1 997 372 300 60 81 chr11 54070860 54071045 -67772811 - MLT1A0 LTR MaLR -50 315 135 1 997 713 294 60 0 chr11 54071045 54071229 -67772627 - B3A SINE B2 -2 196 2 1 997 978 56 0 0 chr11 54071245 54071370 -67772486 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 1 997 1483 216 157 6 chr11 54072037 54072401 -67771455 + MTD LTR MaLR 1 419 0 1 997 3010 288 76 60 chr11 54072557 54073192 -67770664 - Lx7 LINE L1 -1589 6107 5464 1 997 587 14 14 0 chr11 54073192 54073264 -67770592 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 997 3010 302 109 38 chr11 54073264 54074733 -67769123 - Lx7 LINE L1 -417 5463 3873 1 997 2869 70 16 8 chr11 54074733 54075121 -67768735 + ORR1A1-int LTR MaLR 1402 1792 0 1 997 2995 40 0 0 chr11 54075121 54075467 -67768389 + ORR1A1 LTR MaLR 1 346 0 1 997 253 196 19 38 chr11 54075469 54075522 -67768334 + Lx9 LINE L1 5848 5899 -1745 1 997 240 288 51 0 chr11 54076722 54076781 -67767075 - MER63D DNA AcHobo -999 62 1 1 997 258 56 0 0 chr11 54078702 54078738 -67765118 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 997 365 294 24 28 chr11 54082865 54083000 -67760856 + B4A SINE B4 27 156 -136 1 997 440 242 80 10 chr11 54083198 54083298 -67760558 + PB1 SINE Alu 13 119 -8 1 997 1365 82 11 0 chr11 54083353 54083535 -67760321 + B2_Mm1t SINE B2 1 184 -9 1 997 375 298 22 2 chr11 54083768 54083885 -67759971 - MIR SINE MIR -35 233 106 1 997 897 197 82 15 chr11 54084110 54084306 -67759550 - B3 SINE B2 -5 211 3 1 997 183 230 12 119 chr11 54084949 54085033 -67758823 + L2 LINE L2 2875 2949 -470 1 997 1393 243 44 17 chr11 54086832 54087176 -67756680 - Lx9 LINE L1 -459 7185 6833 1 997 360 323 99 0 chr11 54087206 54087367 -67756489 + Lx9 LINE L1 7256 7432 -212 1 997 486 172 35 52 chr11 54087480 54087652 -67756204 + RMER17C LTR ERVK 102 270 -140 1 997 672 182 11 22 chr11 54087657 54087710 -67756146 + polypurine Low_complexity Low_complexity 2 54 0 1 997 1497 28 0 0 chr11 54087710 54087888 -67755968 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 1 997 672 182 11 22 chr11 54087888 54088014 -67755842 + polypurine Low_complexity Low_complexity 55 179 0 1 997 615 257 65 5 chr11 54089671 54089886 -67753970 + L1MA5 LINE L1 6066 6293 -7 1 997 2236 270 58 0 chr11 54090006 54090573 -67753283 + Lx5 LINE L1 6455 7039 -11 1 997 399 223 61 128 chr11 54090768 54090948 -67752908 - B3A SINE B2 -14 202 35 1 997 655 206 306 10 chr11 54090956 54091152 -67752704 + MTD LTR MaLR 7 260 -161 1 997 701 324 111 28 chr11 54091362 54091857 -67751999 - L1M5 LINE L1 -922 5224 4689 1 997 441 0 0 0 chr11 54091859 54091908 -67751948 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 997 434 18 18 0 chr11 54091908 54091962 -67751894 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 997 495 264 16 32 chr11 54091971 54092096 -67751760 - B4A SINE B4 -46 246 124 1 997 310 246 0 0 chr11 54092176 54092245 -67751611 - B4A SINE B4 -218 74 6 1 997 503 264 78 0 chr11 54092248 54092377 -67751479 + RSINE1 SINE B4 11 149 -16 1 997 1094 187 53 19 chr11 54092524 54092731 -67751125 + B3 SINE B2 1 214 -2 1 997 7469 132 14 16 chr11 54092851 54094618 -67749238 - Lx LINE L1 -1 6653 4903 1 997 665 324 93 42 chr11 54094690 54095292 -67748564 - L1M5 LINE L1 -1809 4337 3705 1 997 201 39 0 0 chr11 54095353 54095379 -67748477 + (TCCA)n Simple_repeat Simple_repeat 2 27 0 1 997 332 356 134 13 chr11 54095566 54095805 -67748051 - L1M5 LINE L1 -2531 3615 3348 1 997 730 242 13 25 chr11 54095822 54095979 -67747877 + RSINE1 SINE B4 11 165 0 1 997 267 294 20 65 chr11 54095979 54096015 -67747841 + B2_Mm2 SINE B2 30 193 -2 1 997 756 33 0 0 chr11 54096075 54096166 -67747690 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 1 997 587 294 14 14 chr11 54096329 54096474 -67747382 + B1F SINE Alu 4 148 -1 1 997 367 233 107 102 chr11 54096579 54096775 -67747081 - L1M5 LINE L1 -3172 2974 2778 1 997 251 316 13 0 chr11 54096781 54096860 -67746996 - Charlie5 DNA MER1_type -4 2620 2541 1 997 487 287 0 52 chr11 54096861 54096997 -67746859 + RSINE1 SINE B4 2 130 -35 1 997 333 47 0 0 chr11 54097011 54097054 -67746802 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 997 237 290 18 53 chr11 54097107 54097220 -67746636 - Charlie5 DNA MER1_type -142 2482 2374 1 997 1227 41 7 0 chr11 54097232 54097377 -67746479 - B1_Mm SINE Alu -1 146 1 1 997 3069 78 7 17 chr11 54097439 54097843 -67746013 - MTB LTR MaLR 0 400 1 1 997 759 217 60 79 chr11 54098019 54098234 -67745622 - MTEa LTR MaLR 0 379 169 1 997 669 58 0 0 chr11 54098234 54098320 -67745536 + (TCCC)n Simple_repeat Simple_repeat 2 87 0 1 997 252 0 0 0 chr11 54098319 54098347 -67745509 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1 997 627 248 93 7 chr11 54098347 54098497 -67745359 - MTEa LTR MaLR -196 183 21 1 997 1298 205 37 47 chr11 54098503 54098825 -67745031 + ORR1E LTR MaLR 39 357 -2 1 997 709 217 16 0 chr11 54099166 54099295 -67744561 - RSINE1 SINE B4 -33 132 2 1 997 320 295 13 0 chr11 54099895 54099973 -67743883 + ID4 SINE ID 5 83 0 1 997 1068 102 78 0 chr11 54100068 54100234 -67743622 + B2_Mm2 SINE B2 2 180 -15 1 997 261 0 0 0 chr11 54100434 54100463 -67743393 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 997 1818 204 50 15 chr11 54100792 54101196 -67742660 - MTD LTR MaLR 0 419 2 1 997 240 326 112 60 chr11 54102343 54102575 -67741281 - L2 LINE L2 -432 2987 2744 1 997 570 224 170 16 chr11 54102638 54102820 -67741036 - B3 SINE B2 0 216 7 1 997 866 214 82 0 chr11 54104017 54104199 -67739657 - B3 SINE B2 -6 210 14 1 997 434 285 146 0 chr11 54104293 54104416 -67739440 - RSINE1 SINE B4 -22 143 3 1 997 336 48 0 0 chr11 54104527 54104569 -67739287 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1 997 477 0 0 0 chr11 54104654 54104707 -67739149 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 997 360 0 0 0 chr11 54104707 54104746 -67739110 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 997 812 311 111 102 chr11 54104756 54105351 -67738505 + RLTR18 LTR ERVK 1 600 -16 1 997 771 262 74 46 chr11 54105407 54105691 -67738165 - B4 SINE B4 0 292 1 1 997 659 203 62 0 chr11 54106087 54106215 -67737641 - ID_B1 SINE B4 -6 218 83 1 997 253 265 69 46 chr11 54106219 54106306 -67737550 - PB1D10 SINE Alu -28 89 1 1 997 651 248 50 0 chr11 54106435 54106576 -67737280 - ID_B1 SINE B4 0 224 77 1 997 844 258 13 36 chr11 54106698 54106923 -67736933 - ID_B1 SINE B4 -2 222 3 1 997 512 173 0 43 chr11 54106993 54107180 -67736676 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 997 446 203 0 0 chr11 54107205 54107279 -67736577 - B3 SINE B2 -142 74 1 1 997 364 91 15 15 chr11 54108301 54108368 -67735488 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 997 912 249 28 18 chr11 54109166 54109383 -67734473 + ID_B1 SINE B4 2 220 -4 1 997 636 115 0 0 chr11 54110136 54110240 -67733616 + (TC)n Simple_repeat Simple_repeat 2 105 0 1 997 297 51 0 0 chr11 54110241 54110280 -67733576 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 997 183 42 0 0 chr11 54110702 54110726 -67733130 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 997 7179 103 10 13 chr11 54110777 54111803 -67732053 - RLTR13D5 LTR ERVK 0 1023 1 1 997 1179 112 51 0 chr11 54111956 54112134 -67731722 - B2_Mm2 SINE B2 -7 188 2 1 997 290 300 59 37 chr11 54112143 54112330 -67731526 - B2_Mm2 SINE B2 -3 192 2 1 997 652 290 53 5 chr11 54112403 54112590 -67731266 - B3A SINE B2 0 198 3 1 997 496 269 30 8 chr11 54112749 54112880 -67730976 + B1F2 SINE Alu 1 134 -15 1 997 389 358 31 26 chr11 54113212 54113404 -67730452 - MLT1N2 LTR MaLR -312 250 58 1 997 213 39 0 0 chr11 54114150 54114176 -67729680 + (T)n Simple_repeat Simple_repeat 1 26 0 1 997 6238 55 3 27 chr11 54114190 54115056 -67728800 - L1Md_F2 LINE L1 0 6582 5737 1 997 272 222 0 0 chr11 54116527 54116590 -67727266 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 997 23 0 0 0 chr11 54117214 54117237 -67726619 + GC_rich Low_complexity Low_complexity 1 23 0 1 997 183 80 0 0 chr11 54117698 54117723 -67726133 + (CGG)n Simple_repeat Simple_repeat 1 25 0 1 997 25 0 0 0 chr11 54118785 54118810 -67725046 + AT_rich Low_complexity Low_complexity 1 25 0 1 997 351 141 0 0 chr11 54119198 54119262 -67724594 + (TGG)n Simple_repeat Simple_repeat 1 64 0 1 997 230 0 33 0 chr11 54119831 54119861 -67723995 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 997 232 241 56 0 chr11 54121312 54121366 -67722490 + L2c LINE L2 3326 3382 -5 1 997 386 270 122 0 chr11 54121712 54121827 -67722029 + B1F SINE Alu 20 148 -1 1 997 1090 112 11 0 chr11 54121961 54122139 -67721717 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1 997 825 161 6 47 chr11 54122613 54122783 -67721073 - RLTR20A2 LTR ERVK 0 578 416 1 997 592 187 282 44 chr11 54122775 54123027 -67720829 - RLTR20A2 LTR ERVK -222 312 1 1 997 203 295 16 32 chr11 54124900 54124963 -67718893 + L3 LINE CR1 3055 3116 -1373 2 997 180 0 0 0 chr11 54125406 54125426 -67718430 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 2 997 333 0 0 0 chr11 54126081 54126118 -67717738 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 997 641 252 82 0 chr11 54127877 54128015 -67715841 + RSINE1 SINE B4 3 152 -13 2 997 378 0 0 0 chr11 54128015 54128057 -67715799 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 997 271 302 41 25 chr11 54128823 54128968 -67714888 - MIRb SINE MIR -47 161 23 2 997 603 27 0 0 chr11 54131588 54131661 -67712195 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 997 852 234 33 23 chr11 54131719 54131933 -67711923 + B3 SINE B2 1 216 0 2 997 229 270 118 20 chr11 54132230 54132332 -67711524 - MIRc SINE MIR -113 155 44 2 998 388 282 146 94 chr11 54134322 54134483 -67709373 - B3 SINE B2 -28 188 19 2 998 442 263 26 0 chr11 54134755 54134869 -67708987 - PB1D10 SINE Alu 0 117 1 2 998 360 0 0 0 chr11 54138107 54138147 -67705709 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 998 353 315 0 69 chr11 54138155 54138271 -67705585 - RMER15 LTR ERVL -105 470 363 2 998 369 0 0 0 chr11 54138331 54138372 -67705484 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 998 592 262 14 29 chr11 54139262 54139434 -67704422 + ID_B1 SINE B4 60 223 -1 2 998 180 77 0 0 chr11 54142331 54142357 -67701499 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 998 495 284 188 0 chr11 54142396 54142572 -67701284 - B4 SINE B4 -3 289 81 2 998 1392 241 33 24 chr11 54144204 54144536 -67699320 - ORR1D2 LTR MaLR -4 366 32 2 998 359 267 196 40 chr11 54146945 54147144 -67696712 - LTR78 LTR ERV1 -4 1300 1071 2 998 237 167 241 0 chr11 54147499 54147553 -67696303 - MTEa LTR MaLR 0 379 313 2 998 524 29 29 0 chr11 54147553 54147622 -67696234 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 2 998 1162 227 42 36 chr11 54147622 54147928 -67695928 - MTEa LTR MaLR -54 325 18 2 998 235 294 64 21 chr11 54148139 54148233 -67695623 - LTR78 LTR ERV1 -1051 253 156 2 998 394 330 0 0 chr11 54148270 54148385 -67695471 - PB1D7 SINE Alu -5 115 1 2 998 189 0 0 0 chr11 54148910 54148931 -67694925 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 2 998 484 211 0 0 chr11 54148938 54149028 -67694828 - PB1D10 SINE Alu -18 99 10 2 998 413 286 0 0 chr11 54148942 54149040 -67694816 - ID_B1 SINE B4 -48 176 79 2 998 286 228 8 30 chr11 54150209 54150340 -67693516 + CT-rich Low_complexity Low_complexity 1 128 0 2 998 297 377 47 37 chr11 54151257 54151447 -67692409 + MIRb SINE MIR 21 212 -56 2 998 222 265 0 0 chr11 54152239 54152288 -67691568 + C-rich Low_complexity Low_complexity 4 52 0 2 998 324 0 0 0 chr11 54152733 54152769 -67691087 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2 998 524 241 45 62 chr11 54152873 54153050 -67690806 + Lx8 LINE L1 7256 7429 -44 2 998 419 188 20 0 chr11 54153081 54153182 -67690674 + (CATA)n Simple_repeat Simple_repeat 2 104 0 2 998 228 188 0 0 chr11 54154332 54154401 -67689455 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2 998 794 205 121 0 chr11 54154407 54154597 -67689259 + B3 SINE B2 4 216 0 2 998 478 321 15 7 chr11 54155528 54155663 -67688193 - RSINE1 SINE B4 0 165 30 2 998 468 0 0 0 chr11 54155702 54155754 -67688102 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 2 998 608 257 87 27 chr11 54155938 54155972 -67687884 - B3 SINE B2 -17 199 165 2 998 351 0 0 0 chr11 54155972 54156011 -67687845 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 998 608 257 87 27 chr11 54156011 54156160 -67687696 - B3 SINE B2 -52 164 7 2 998 729 230 85 11 chr11 54156690 54156866 -67686990 - B3A SINE B2 -5 193 5 2 998 666 87 0 0 chr11 54156876 54156979 -67686877 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 998 216 0 0 0 chr11 54157050 54157074 -67686782 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 998 353 305 37 19 chr11 54157074 54157181 -67686675 - RSINE1 SINE B4 -1 164 56 2 998 337 342 35 1 chr11 54157591 54157751 -67686105 + MER5A1 DNA MER1_type 1 171 -18 2 998 400 229 162 0 chr11 54157959 54158064 -67685792 + RSINE1 SINE B4 3 124 -41 2 998 324 0 0 0 chr11 54158064 54158100 -67685756 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 998 364 319 36 22 chr11 54158142 54158280 -67685576 + B1F SINE Alu 8 147 0 2 998 182 37 0 36 chr11 54158415 54158443 -67685413 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 998 468 239 68 27 chr11 54158472 54158618 -67685238 - ID_B1 SINE B4 -20 204 53 2 998 1843 147 64 17 chr11 54159782 54160128 -67683728 - ORR1B2 LTR MaLR -5 362 1 2 998 737 157 211 17 chr11 54160260 54160435 -67683421 - RMER13B LTR ERVK 0 908 700 2 998 1071 161 0 0 chr11 54160433 54160607 -67683249 - RMER13B LTR ERVK -734 174 1 2 998 600 174 0 0 chr11 54160743 54160864 -67682992 + CT-rich Low_complexity Low_complexity 2 122 0 2 998 450 53 0 0 chr11 54160885 54160942 -67682914 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 2 998 544 299 38 13 chr11 54160951 54161110 -67682746 - RSINE1 SINE B4 0 165 3 2 998 274 260 0 122 chr11 54161113 54161270 -67682586 + MIRb SINE MIR 124 253 -15 2 998 231 114 0 0 chr11 54161854 54161889 -67681967 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2 998 294 29 0 0 chr11 54161891 54161926 -67681930 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2 998 423 238 164 0 chr11 54161931 54162053 -67681803 - B1F1 SINE Alu -7 142 1 2 998 1372 6 11 17 chr11 54163050 54163230 -67680626 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 2 998 342 61 0 0 chr11 54163753 54163802 -67680054 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 2 998 430 214 50 10 chr11 54164344 54164443 -67679413 + ID_B1 SINE B4 1 103 -121 2 998 289 224 0 96 chr11 54164655 54164671 -67679185 - BC1_Mm scRNA scRNA -66 86 72 2 998 426 20 0 0 chr11 54164671 54164722 -67679134 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 998 316 190 0 38 chr11 54164722 54164799 -67679057 - ID4_ SINE ID -11 72 2 2 998 192 77 0 0 chr11 54165204 54165230 -67678626 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 998 270 258 0 29 chr11 54165245 54165313 -67678543 - ID4 SINE ID 0 83 18 2 998 230 0 33 0 chr11 54165816 54165846 -67678010 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 998 277 252 81 25 chr11 54165890 54166010 -67677846 - MIRb SINE MIR -41 167 41 2 998 564 288 0 0 chr11 54167193 54167325 -67676531 + RSINE1 SINE B4 2 133 -32 2 998 542 193 134 0 chr11 54167451 54167570 -67676286 + B1_Mur2 SINE Alu 5 139 -10 2 998 225 0 0 0 chr11 54167570 54167595 -67676261 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 998 611 194 6 115 chr11 54167796 54167953 -67675903 - B1F SINE Alu -9 140 1 2 998 229 200 22 0 chr11 54168388 54168433 -67675423 + GA-rich Low_complexity Low_complexity 3 48 0 2 998 432 0 0 0 chr11 54168434 54168482 -67675374 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 998 468 0 0 0 chr11 54168745 54168797 -67675059 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 998 573 314 49 0 chr11 54168939 54169143 -67674713 + ID_B1 SINE B4 1 214 -10 2 998 263 316 0 48 chr11 54169319 54169422 -67674434 + PB1D10 SINE Alu 10 107 -10 2 998 643 222 142 0 chr11 54169453 54169629 -67674227 - B3 SINE B2 -13 203 3 2 998 210 118 0 0 chr11 54169856 54169890 -67673966 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2 998 1129 192 19 0 chr11 54170302 54170510 -67673346 - B3 SINE B2 -4 212 1 2 998 373 167 170 43 chr11 54170735 54170829 -67673027 + B1_Mur1 SINE Alu 36 141 -8 2 998 342 184 0 0 chr11 54170830 54170906 -67672950 + (CATA)n Simple_repeat Simple_repeat 3 78 0 2 998 1152 210 9 9 chr11 54170909 54171125 -67672731 + B3 SINE B2 1 216 0 2 998 183 205 0 0 chr11 54171127 54171166 -67672690 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 2 998 614 289 97 85 chr11 54171701 54172030 -67671826 + ORR1E LTR MaLR 22 354 -5 2 998 278 328 103 57 chr11 54172183 54172535 -67671321 - MLT1L LTR MaLR -146 464 8 2 998 222 352 114 0 chr11 54172581 54172686 -67671170 + L2b LINE L2 3247 3363 -12 2 998 931 213 27 31 chr11 54173098 54173321 -67670535 + ID_B1 SINE B4 3 224 0 2 998 535 273 104 20 chr11 54173887 54174089 -67669767 - ID_B1 SINE B4 -5 219 1 2 998 330 87 0 0 chr11 54174330 54174376 -67669480 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 2 998 279 317 0 0 chr11 54176398 54176480 -67667376 - ID4 SINE ID 0 83 2 2 998 751 228 17 45 chr11 54179031 54179210 -67664646 + B3A SINE B2 1 174 -24 2 998 366 23 0 0 chr11 54179242 54179285 -67664571 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 998 1059 117 0 0 chr11 54179488 54179633 -67664223 + B1_Mus1 SINE Alu 4 148 0 2 998 424 0 36 0 chr11 54179789 54179845 -67664011 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 998 200 34 0 33 chr11 54180209 54180239 -67663617 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 2 998 539 235 148 0 chr11 54180239 54180388 -67663468 - B3 SINE B2 -16 200 30 2 998 652 260 53 12 chr11 54180690 54180873 -67662983 - B3 SINE B2 -9 186 1 2 998 399 41 0 0 chr11 54180985 54181034 -67662822 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 998 423 299 43 7 chr11 54181034 54181172 -67662684 - B3 SINE B2 -53 163 21 2 998 219 139 0 0 chr11 54181194 54181230 -67662626 + (T)n Simple_repeat Simple_repeat 1 36 0 2 998 516 295 75 28 chr11 54181307 54181520 -67662336 + ID_B1 SINE B4 2 224 0 2 998 546 206 173 8 chr11 54181528 54181655 -67662201 + B1_Mur1 SINE Alu 1 148 -1 2 998 695 284 73 101 chr11 54181694 54182186 -67661670 + RLTR18B LTR ERVK 9 571 -45 3 998 1374 180 139 22 chr11 54182186 54182510 -67661346 - RMER1C Other Other -6 1336 975 3 998 869 297 30 22 chr11 54183123 54183392 -67660464 + B4A SINE B4 8 278 -14 3 998 259 115 0 47 chr11 54183737 54183801 -67660055 + (CAGAGA)n Simple_repeat Simple_repeat 2 62 0 3 998 951 114 0 0 chr11 54183812 54183987 -67659869 + (GA)n Simple_repeat Simple_repeat 2 176 0 3 998 408 233 90 30 chr11 54184685 54184818 -67659038 - ID_B1 SINE B4 -14 210 70 3 998 342 0 0 0 chr11 54184990 54185028 -67658828 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 998 787 178 15 0 chr11 54185028 54185163 -67658693 - B1_Mur3 SINE Alu -11 138 2 3 998 373 218 13 0 chr11 54185708 54185786 -67658070 - PB1D10 SINE Alu -7 110 32 3 998 226 287 10 0 chr11 54186258 54186359 -67657497 - L1M5 LINE L1 -688 5436 5335 3 998 215 125 25 0 chr11 54186494 54186534 -67657322 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 3 998 1052 127 0 7 chr11 54186559 54186710 -67657146 + B1_Mur4 SINE Alu 1 150 0 3 998 180 315 43 43 chr11 54187307 54187423 -67656433 - L2c LINE L2 -230 3157 3042 3 998 1168 15 0 7 chr11 54187815 54187950 -67655906 + B1_Mm SINE Alu 2 135 -12 3 998 980 111 0 7 chr11 54187950 54188104 -67655752 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 3 998 2769 116 14 26 chr11 54188174 54188600 -67655256 - MTC LTR MaLR 0 421 1 3 998 471 244 134 39 chr11 54189285 54189464 -67654392 + B4A SINE B4 1 196 -96 3 998 226 284 196 27 chr11 54189466 54189578 -67654278 + B4A SINE B4 161 291 -1 3 998 620 142 103 82 chr11 54191145 54191291 -67652565 + B1_Mur2 SINE Alu 1 149 0 3 998 2786 170 252 8 chr11 54192345 54193051 -67650805 - RMER21A LTR ERV1 -69 878 1 3 998 2913 130 6 28 chr11 54193138 54193606 -67650250 - MurERV4-int LTR ERVK -89 5171 4714 3 998 6600 176 23 40 chr11 54193605 54193910 -67649946 - MurERV4-int LTR ERVK -1618 3642 3325 3 998 216 0 0 0 chr11 54193910 54193934 -67649922 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 998 6600 176 23 40 chr11 54193934 54194921 -67648935 - MurERV4-int LTR ERVK -1936 3324 2373 3 998 38744 31 1 0 chr11 54194927 54202049 -67641807 - L1Md_T LINE L1 0 6585 1 3 998 5386 177 40 52 chr11 54202049 54202500 -67641356 - MurERV4-int LTR ERVK -2877 2383 1946 3 998 1542 52 21 0 chr11 54202500 54202691 -67641165 + B2_Mm2 SINE B2 1 195 0 3 998 5386 177 40 52 chr11 54202691 54203338 -67640518 - MurERV4-int LTR ERVK -3315 1945 1298 3 998 328 343 7 0 chr11 54203422 54203559 -67640297 - L1MD LINE L1 -1201 4945 4808 3 998 207 0 0 0 chr11 54204435 54204458 -67639398 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 998 1147 68 0 26 chr11 54204474 54204625 -67639231 + B1_Mus1 SINE Alu 2 148 0 3 998 281 266 0 95 chr11 54204699 54204836 -67639020 + L1MA5 LINE L1 5882 6005 -295 3 998 208 250 0 37 chr11 54204905 54204959 -67638897 + (CATA)n Simple_repeat Simple_repeat 2 53 0 3 998 251 120 0 74 chr11 54204961 54205015 -67638841 - MER4B-int LTR ERV1 -5564 1194 1145 3 998 338 282 0 45 chr11 54205094 54205183 -67638673 - PB1D10 SINE Alu -6 111 27 3 998 2063 256 43 19 chr11 54205598 54206232 -67637624 + L1_Mur3 LINE L1 3958 4606 -1274 3 998 450 194 10 0 chr11 54206232 54206330 -67637526 - B4A SINE B4 -8 284 186 3 998 677 167 38 0 chr11 54206323 54206455 -67637401 + B1_Mur4 SINE Alu 14 150 0 3 998 1245 237 118 58 chr11 54206433 54206916 -67636940 - MTC-int LTR MaLR -74 1184 673 3 998 1142 58 0 0 chr11 54206949 54207087 -67636769 + B1_Mus1 SINE Alu 1 138 -10 3 998 335 21 43 0 chr11 54207087 54207134 -67636722 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 998 379 227 0 0 chr11 54207281 54207347 -67636509 + ID4_ SINE ID 5 70 -13 3 998 2549 68 16 0 chr11 54207355 54207677 -67636179 - ORR1A2 LTR MaLR 0 327 1 3 998 276 278 0 0 chr11 54208536 54208608 -67635248 - RSINE1 SINE B4 -92 73 2 3 998 407 331 84 39 chr11 54209183 54209469 -67634387 - L2a LINE L2 -5 3421 3123 3 998 317 248 65 28 chr11 54209518 54209626 -67634230 - L2a LINE L2 -756 2663 2552 3 998 199 286 20 0 chr11 54210048 54210097 -67633759 - MIRb SINE MIR -180 88 39 3 998 1403 94 11 0 chr11 54210684 54210875 -67632981 - B2_Mm1t SINE B2 0 193 1 3 998 283 342 42 24 chr11 54211595 54211760 -67632096 - MIRb SINE MIR -84 184 17 3 998 332 327 64 0 chr11 54212647 54212757 -67631099 + PB1 SINE Alu 1 117 -10 3 998 740 221 105 0 chr11 54212920 54213110 -67630746 - B3 SINE B2 -5 211 2 3 998 536 266 6 117 chr11 54214230 54214409 -67629447 + B4A SINE B4 58 220 -72 3 998 189 220 0 0 chr11 54216045 54216076 -67627780 + A-rich Low_complexity Low_complexity 1 31 0 3 998 1294 97 37 11 chr11 54216076 54216264 -67627592 + B2_Mm2 SINE B2 3 195 0 3 998 189 220 0 0 chr11 54216264 54216282 -67627574 + A-rich Low_complexity Low_complexity 32 49 0 3 998 1000 278 91 29 chr11 54216370 54216819 -67627037 + L1MC1 LINE L1 5321 5797 -547 3 998 466 279 57 31 chr11 54216837 54216996 -67626860 + RSINE1 SINE B4 3 165 0 3 998 1002 259 76 43 chr11 54217043 54217466 -67626390 + L1MC1 LINE L1 5878 6314 -19 3 998 196 333 63 27 chr11 54217494 54217605 -67626251 - L2 LINE L2 -1390 2029 1915 3 998 481 101 0 43 chr11 54218294 54218387 -67625469 - L1Md_F3 LINE L1 0 6584 6496 3 998 22 0 0 0 chr11 54218739 54218761 -67625095 + AT_rich Low_complexity Low_complexity 1 22 0 3 998 236 331 60 60 chr11 54219915 54220082 -67623774 - LTR16B1 LTR ERVL -311 169 3 3 998 1061 81 7 0 chr11 54220193 54220329 -67623527 - B1_Mus2 SINE Alu -10 137 1 3 998 206 286 13 13 chr11 54220865 54220943 -67622913 + CT-rich Low_complexity Low_complexity 4 81 0 3 998 1178 51 0 0 chr11 54220960 54221098 -67622758 - B1_Mus2 SINE Alu -8 139 2 3 998 537 105 58 0 chr11 54221098 54221184 -67622672 - 4.5SRNA scRNA scRNA -2 92 2 3 998 194 81 27 0 chr11 54221264 54221301 -67622555 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 3 998 1171 75 0 0 chr11 54221310 54221456 -67622400 - B1_Mus2 SINE Alu 0 147 2 3 998 22 0 0 0 chr11 54221711 54221733 -67622123 + AT_rich Low_complexity Low_complexity 1 22 0 3 998 23 54 0 0 chr11 54221826 54221863 -67621993 + AT_rich Low_complexity Low_complexity 1 37 0 3 998 1341 262 78 20 chr11 54222027 54222374 -67621482 + MTEa LTR MaLR 1 367 -12 3 998 1885 190 31 17 chr11 54222594 54222952 -67620904 - Lx5 LINE L1 -3 7047 6685 3 998 21 0 0 0 chr11 54223098 54223119 -67620737 + AT_rich Low_complexity Low_complexity 1 21 0 3 998 885 261 7 11 chr11 54223402 54223605 -67620251 - B3A SINE B2 -7 188 1 3 998 466 339 0 0 chr11 54223663 54223778 -67620078 - B1_Mur1 SINE Alu -33 116 2 3 998 538 299 92 15 chr11 54223784 54224046 -67619810 - L1MB3 LINE L1 -19 6164 5883 3 998 345 194 0 16 chr11 54224057 54224120 -67619736 - ID_B1 SINE B4 -79 145 84 3 998 312 236 22 0 chr11 54224120 54224209 -67619647 - L1MB3 LINE L1 -274 5909 5819 3 998 762 208 147 5 chr11 54224210 54224394 -67619462 + B3 SINE B2 1 210 -6 3 998 573 272 67 20 chr11 54224416 54224566 -67619290 + RSINE1 SINE B4 9 165 0 3 998 547 62 68 27 chr11 54224598 54224746 -67619110 + (CA)n Simple_repeat Simple_repeat 1 154 0 3 998 644 290 69 17 chr11 54224788 54225079 -67618777 - L1M4 LINE L1 -392 5782 5477 3 998 313 306 93 8 chr11 54225554 54225801 -67618055 - L1M4 LINE L1 -942 5204 4937 3 998 295 306 141 10 chr11 54225905 54226004 -67617852 - PB1D10 SINE Alu -2 115 4 3 998 237 178 0 0 chr11 54226009 54226054 -67617802 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 998 575 281 60 56 chr11 54226200 54226243 -67617613 - B4A SINE B4 0 292 256 3 998 672 48 0 0 chr11 54226243 54226327 -67617529 + (TG)n Simple_repeat Simple_repeat 2 85 0 3 998 575 281 60 56 chr11 54226327 54226532 -67617324 - B4A SINE B4 -37 255 44 3 998 297 330 28 0 chr11 54226700 54226806 -67617050 - MLT1K LTR MaLR -341 254 146 3 998 274 256 103 0 chr11 54226988 54227066 -67616790 + PB1D10 SINE Alu 26 111 -6 3 998 425 18 0 0 chr11 54227104 54227159 -67616697 + B1_Mur4 SINE Alu 96 150 0 3 998 443 291 145 75 chr11 54227820 54228184 -67615672 - MLT1B LTR MaLR -1 466 65 3 998 248 222 13 65 chr11 54228338 54228415 -67615441 - HAL1 LINE L1 -647 1860 1788 3 998 364 304 127 33 chr11 54228513 54228758 -67615098 - HAL1 LINE L1 -835 1672 1405 3 998 7878 65 22 6 chr11 54229545 54230552 -67613304 + RLTR13D5 LTR ERVK 1 1023 0 3 998 1136 208 161 6 chr11 54230689 54231013 -67612843 + ORR1D1 LTR MaLR 1 374 0 3 998 609 72 0 0 chr11 54231695 54231778 -67612078 + (TTTTC)n Simple_repeat Simple_repeat 2 84 0 3 998 234 277 113 47 chr11 54231789 54231895 -67611961 - MIRb SINE MIR -15 253 141 3 998 540 45 0 0 chr11 54232394 54232461 -67611395 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 3 998 586 271 23 40 chr11 54232470 54232643 -67611213 - MLT2B3 LTR ERVL -45 509 340 3 998 1447 227 151 28 chr11 54232620 54232660 -67611196 - MTE-int LTR MaLR -1140 440 404 3 998 1955 136 12 61 chr11 54232660 54233004 -67610852 - ORR1A4 LTR MaLR -2 327 1 3 998 1447 227 151 28 chr11 54233004 54233353 -67610503 - MTE-int LTR MaLR -1177 403 3 3 998 627 108 0 0 chr11 54233355 54233448 -67610408 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 3 998 4206 100 7 2 chr11 54233448 54234031 -67609825 - Lx2A1 LINE L1 -1 7007 6422 3 998 1099 308 37 8 chr11 54234031 54234341 -67609515 - ORR1E LTR MaLR -30 340 1 3 998 361 318 45 0 chr11 54234363 54234495 -67609361 - ERVL-B4-int LTR ERVL -1274 4440 4303 3 998 1205 273 60 29 chr11 54234638 54235250 -67608606 - ERVL-B4-int LTR ERVL -1618 4096 3377 3 998 297 307 44 0 chr11 54235355 54235469 -67608387 - ERVL-B4-int LTR ERVL -2435 3279 3161 3 998 427 240 175 40 chr11 54235522 54235741 -67608115 - ERVL-B4-int LTR ERVL -2668 3089 2833 3 998 425 256 47 81 chr11 54235919 54236068 -67607788 + B1_Mur1 SINE Alu 1 144 -5 3 998 236 306 107 0 chr11 54236068 54236189 -67607667 + L1M5 LINE L1 5682 5815 -358 3 998 183 421 0 10 chr11 54237133 54237229 -67606627 + MER5A DNA MER1_type 91 185 -4 3 998 289 0 49 0 chr11 54237399 54237440 -67606416 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 3 998 901 154 0 32 chr11 54237440 54237594 -67606262 - B1_Mur3 SINE Alu 0 149 1 4 998 197 303 11 22 chr11 54237799 54237890 -67605966 + MIR SINE MIR 86 175 -87 4 998 415 225 14 0 chr11 54237953 54238024 -67605832 + ID4 SINE ID 12 83 0 4 998 211 320 50 20 chr11 54237954 54238053 -67605803 + B2_Mm2 SINE B2 13 114 -81 4 998 333 316 11 97 chr11 54239401 54239576 -67604280 - MER5A1 DNA MER1_type -4 162 3 4 998 21 0 0 0 chr11 54240257 54240278 -67603578 + AT_rich Low_complexity Low_complexity 1 21 0 4 998 666 68 0 0 chr11 54240477 54240565 -67603291 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 4 998 983 269 23 38 chr11 54241495 54241761 -67602095 - B4A SINE B4 -29 263 2 4 998 436 261 76 34 chr11 54241912 54242031 -67601825 - RSINE1 SINE B4 -40 125 2 4 998 481 325 67 21 chr11 54242042 54242429 -67601427 - L1MA5A LINE L1 -471 5826 5422 4 998 1257 41 0 0 chr11 54242429 54242576 -67601280 - B1_Mm SINE Alu 0 147 1 4 998 410 322 73 56 chr11 54242576 54242660 -67601196 - L1_Mur3 LINE L1 -488 5392 5312 4 998 2467 239 101 66 chr11 54242667 54243542 -67600314 - Lx8 LINE L1 0 7473 6569 4 998 871 177 0 0 chr11 54243941 54244071 -67599785 + B3 SINE B2 1 130 -86 4 998 5633 20 0 29 chr11 54244109 54244791 -67599065 + L1Md_A LINE L1 5919 6580 -2 4 998 226 305 68 0 chr11 54244971 54245030 -67598826 + L2a LINE L2 3315 3377 -49 4 998 226 318 31 23 chr11 54245038 54245167 -67598689 + L2 LINE L2 1739 1868 -1551 4 998 309 262 117 0 chr11 54245186 54245289 -67598567 - HAL1-3A_ME LINE L1 -70 2788 2674 4 998 311 155 23 23 chr11 54245289 54245375 -67598481 + C-rich Low_complexity Low_complexity 4 89 0 4 998 455 187 0 9 chr11 54245433 54245541 -67598315 + CT-rich Low_complexity Low_complexity 3 109 0 4 998 1017 115 0 20 chr11 54245565 54245716 -67598140 - B1_Mur3 SINE Alu -1 148 1 4 998 204 239 88 15 chr11 54245721 54245789 -67598067 + L2 LINE L2 1931 2003 -1416 4 998 213 276 0 106 chr11 54246030 54246115 -67597741 + L2 LINE L2 2411 2486 -933 4 998 3285 184 83 22 chr11 54246184 54246960 -67596896 + RMER1B Other Other 19 1053 -13 4 998 1004 224 5 54 chr11 54246963 54247185 -67596671 - B3 SINE B2 0 216 6 4 998 322 211 127 0 chr11 54247653 54247724 -67596132 - ID4_ SINE ID -3 80 1 4 998 676 185 73 7 chr11 54248420 54248556 -67595300 - B1_Mur2 SINE Alu -2 147 3 4 998 1653 137 134 63 chr11 54249334 54249489 -67594367 - ORR1C2 LTR MaLR -8 376 191 4 998 483 18 0 0 chr11 54249489 54249545 -67594311 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 998 1653 137 134 63 chr11 54249545 54249740 -67594116 - ORR1C2 LTR MaLR -194 190 1 4 998 844 162 59 0 chr11 54249985 54250121 -67593735 - B1_Mur4 SINE Alu -6 144 1 4 998 609 304 103 0 chr11 54250235 54250429 -67593427 + B4 SINE B4 9 222 -70 4 998 1227 61 0 0 chr11 54250558 54250705 -67593151 - B1_Mus1 SINE Alu 0 148 2 4 998 214 167 0 0 chr11 54251123 54251159 -67592697 - ID2 SINE ID 0 83 48 4 998 288 0 0 0 chr11 54251239 54251271 -67592585 + (T)n Simple_repeat Simple_repeat 1 32 0 4 998 312 48 0 0 chr11 54252414 54252456 -67591400 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 998 304 231 76 13 chr11 54253218 54253297 -67590559 - MIRc SINE MIR -21 247 164 4 998 323 266 53 50 chr11 54253603 54253858 -67589998 - L1ME1 LINE L1 -142 6022 5769 4 998 225 65 0 0 chr11 54253869 54253900 -67589956 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 998 468 342 60 35 chr11 54253917 54254199 -67589657 - B4A SINE B4 -2 290 2 4 998 377 307 144 9 chr11 54254199 54254451 -67589405 - L1ME1 LINE L1 -400 5779 5494 4 998 360 0 0 0 chr11 54254545 54254585 -67589271 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 998 243 0 0 0 chr11 54254585 54254611 -67589245 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 998 395 296 101 20 chr11 54254615 54254763 -67589093 - RSINE1 SINE B4 -4 161 2 4 998 853 186 148 0 chr11 54255011 54255194 -67588662 - B3 SINE B2 -6 210 1 4 998 369 235 66 57 chr11 54255528 54255650 -67588206 - PB1 SINE Alu -2 125 3 4 998 1755 124 16 263 chr11 54255907 54256466 -67587390 - MTC LTR MaLR 0 421 1 4 998 1383 206 133 9 chr11 54257149 54257473 -67586383 + ORR1D2 LTR MaLR 7 370 0 4 998 472 310 35 39 chr11 54257504 54257696 -67586160 - B4A SINE B4 -33 191 3 4 998 620 248 0 65 chr11 54257725 54257880 -67585976 + B1F2 SINE Alu 5 149 0 4 998 201 333 156 16 chr11 54258007 54258135 -67585721 + L2c LINE L2 3241 3386 -1 4 998 22 56 0 0 chr11 54258184 54258220 -67585636 + AT_rich Low_complexity Low_complexity 1 36 0 4 998 897 255 66 22 chr11 54259207 54259480 -67584376 + B4A SINE B4 2 286 -6 4 998 298 222 28 0 chr11 54259499 54259571 -67584285 - HAL1 LINE L1 -932 1575 1502 4 998 656 157 100 23 chr11 54259858 54259988 -67583868 - B1_Mus1 SINE Alu -7 141 2 4 998 249 229 129 0 chr11 54260353 54260423 -67583433 - ID4_ SINE ID -3 80 2 4 998 362 320 152 17 chr11 54260647 54260814 -67583042 + L1M5 LINE L1 2263 2466 -3680 4 998 314 267 32 72 chr11 54260814 54260939 -67582917 + PB1D9 SINE Alu 1 120 0 4 998 362 320 152 17 chr11 54260939 54261060 -67582796 + L1M5 LINE L1 2467 2590 -3556 4 998 589 219 18 0 chr11 54261504 54261618 -67582238 - B3A SINE B2 -82 116 1 4 998 251 326 41 82 chr11 54261650 54261797 -67582059 - MIR SINE MIR -30 232 92 4 998 1106 174 4 74 chr11 54261807 54262049 -67581807 - URR1B DNA MER1_type 0 225 1 4 998 243 258 16 0 chr11 54262064 54262126 -67581730 + GA-rich Low_complexity Low_complexity 1 63 0 4 998 263 250 14 27 chr11 54262232 54262306 -67581550 + MLT1A LTR MaLR 65 137 -237 4 998 180 0 0 0 chr11 54262311 54262331 -67581525 + (T)n Simple_repeat Simple_repeat 1 20 0 4 998 1211 14 0 45 chr11 54262331 54262485 -67581371 - B1_Mm SINE Alu 0 147 1 4 998 327 277 90 90 chr11 54262745 54262900 -67580956 + L1M5 LINE L1 3875 4029 -2117 4 998 390 310 6 55 chr11 54262940 54263104 -67580752 + L1M5 LINE L1 5467 5622 -618 4 999 687 280 147 21 chr11 54263887 54264172 -67579684 + MER74A LTR ERVL 139 459 -99 4 999 424 291 87 16 chr11 54264304 54264489 -67579367 + B4 SINE B4 1 198 -94 4 999 402 250 49 68 chr11 54264515 54264678 -67579178 + B4 SINE B4 125 284 -8 4 999 300 238 116 66 chr11 54264750 54264948 -67578908 - L1ME1 LINE L1 -98 6081 5874 4 999 462 79 0 0 chr11 54265604 54265667 -67578189 + (TTA)n Simple_repeat Simple_repeat 2 64 0 4 999 284 306 20 20 chr11 54265668 54265768 -67578088 - B1_Mus1 SINE Alu -12 136 37 4 999 947 255 104 31 chr11 54265777 54266190 -67577666 - L1MB5 LINE L1 -46 6128 5686 4 999 181 270 46 31 chr11 54266222 54266287 -67577569 - L4 LINE RTE -1169 860 795 4 999 2883 155 37 14 chr11 54266571 54267087 -67576769 - RLTR11A LTR ERVK 0 528 1 4 999 408 20 0 0 chr11 54268666 54268715 -67575141 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 4 999 336 252 20 29 chr11 54268720 54268822 -67575034 - PB1D9 SINE Alu -16 104 4 4 999 32 0 0 0 chr11 54268830 54268862 -67574994 + AT_rich Low_complexity Low_complexity 1 32 0 4 999 241 333 14 28 chr11 54269135 54269206 -67574650 + ID4 SINE ID 11 80 -3 4 999 189 0 0 0 chr11 54269232 54269253 -67574603 + (T)n Simple_repeat Simple_repeat 1 21 0 4 999 21 0 0 0 chr11 54269425 54269446 -67574410 + AT_rich Low_complexity Low_complexity 1 21 0 4 999 674 228 163 53 chr11 54269466 54269656 -67574200 - B3 SINE B2 -5 211 1 4 999 246 274 49 54 chr11 54269730 54269833 -67574023 - MIRb SINE MIR -155 113 7 4 999 477 122 0 0 chr11 54270112 54270186 -67573670 + (CTTG)n Simple_repeat Simple_repeat 2 75 0 4 999 201 292 0 0 chr11 54270673 54270721 -67573135 + C-rich Low_complexity Low_complexity 4 51 0 4 999 261 222 20 10 chr11 54270756 54270856 -67573000 + CT-rich Low_complexity Low_complexity 4 104 0 4 999 460 188 16 0 chr11 54271570 54271661 -67572195 - B1F1 SINE Alu 0 149 55 4 999 515 171 9 28 chr11 54271664 54271772 -67572084 + U6 snRNA snRNA 2 107 0 4 999 5905 110 1 32 chr11 54272241 54273142 -67570714 + Lx3C LINE L1 6102 6974 -2 4 999 30 0 0 0 chr11 54273144 54273174 -67570682 + AT_rich Low_complexity Low_complexity 1 30 0 4 999 256 130 66 46 chr11 54274474 54274535 -67569321 - PB1D7 SINE Alu -49 68 11 4 999 376 298 132 0 chr11 54275015 54275136 -67568720 - ID_B1 SINE B4 -18 206 70 4 999 725 247 14 0 chr11 54275189 54275335 -67568521 - B1F SINE Alu -1 148 1 4 999 1107 63 28 0 chr11 54275779 54275921 -67567935 - B1_Mm SINE Alu 0 147 2 4 999 1782 106 44 140 chr11 54276048 54276103 -67567753 - ORR1A4 LTR MaLR 0 329 282 4 999 947 123 7 0 chr11 54276103 54276257 -67567599 + (TC)n Simple_repeat Simple_repeat 2 156 0 4 999 1003 72 65 0 chr11 54276266 54276404 -67567452 - B1_Mus1 SINE Alu 0 148 2 4 999 1782 106 44 140 chr11 54276404 54276702 -67567154 - ORR1A4 LTR MaLR -48 281 1 4 999 205 51 51 0 chr11 54276718 54276757 -67567099 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 999 222 293 33 33 chr11 54276966 54277026 -67566830 - PB1D7 SINE Alu -18 102 43 4 999 1337 200 54 48 chr11 54279878 54280209 -67563647 - Lx7 LINE L1 0 7696 7364 4 999 21 57 0 0 chr11 54280248 54280283 -67563573 + AT_rich Low_complexity Low_complexity 1 35 0 4 999 3348 196 19 16 chr11 54280290 54280965 -67562891 - Lx7 LINE L1 -354 7342 6666 4 999 1955 138 88 0 chr11 54280961 54281266 -67562590 + Lx7 LINE L1 6136 6467 -1229 4 999 1652 153 27 50 chr11 54281280 54281736 -67562120 - RMER17C LTR ERVK -518 440 16 4 999 731 206 81 0 chr11 54281754 54281914 -67561942 + Lx6 LINE L1 6481 6653 -807 4 999 1385 141 18 5 chr11 54282012 54282233 -67561623 + URR1B DNA MER1_type 2 225 0 4 999 190 340 69 10 chr11 54282272 54282373 -67561483 - MIR3 SINE MIR -27 181 75 4 999 1379 141 22 4 chr11 54283232 54283460 -67560396 + RMER19B LTR ERVK 670 901 -1 5 999 371 310 23 15 chr11 54283462 54283593 -67560263 - MLT1A0 LTR MaLR -226 139 8 5 999 688 178 25 0 chr11 54283858 54283976 -67559880 - B1_Mus2 SINE Alu -26 121 1 5 999 2882 237 44 3 chr11 54283978 54284596 -67559260 - Lx8 LINE L1 -617 6856 6214 5 999 216 0 0 0 chr11 54284620 54284644 -67559212 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 999 2158 304 86 40 chr11 54284646 54285668 -67558188 - Lx8 LINE L1 -6 7467 6399 5 999 1656 207 117 63 chr11 54285668 54286112 -67557744 - RMER19C LTR ERVK 0 611 144 5 999 1077 264 138 22 chr11 54286154 54286351 -67557505 - Lx8 LINE L1 -1069 6404 6168 5 999 441 0 0 0 chr11 54286351 54286400 -67557456 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 999 1077 264 138 22 chr11 54286400 54286740 -67557116 - Lx8 LINE L1 -1306 6167 5806 5 999 434 307 99 16 chr11 54286815 54286997 -67556859 + L1MC4 LINE L1 6665 6861 -1181 5 999 275 244 53 49 chr11 54287038 54287072 -67556784 - B4A SINE B4 -112 180 110 5 999 349 107 0 0 chr11 54287072 54287128 -67556728 - B1_Mus1 SINE Alu -92 56 1 5 999 275 244 53 49 chr11 54287128 54287146 -67556710 - B4A SINE B4 -112 109 68 5 999 770 69 17 0 chr11 54287186 54287302 -67556554 + B1_Mus1 SINE Alu 31 148 0 5 999 185 119 24 0 chr11 54287303 54287345 -67556511 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 999 605 204 7 45 chr11 54287362 54287516 -67556340 + Lx6 LINE L1 7286 7433 -27 4 999 46 19 0 0 chr11 54287554 54287607 -67556249 + AT_rich Low_complexity Low_complexity 1 53 0 5 999 844 279 10 5 chr11 54288128 54288333 -67555523 + B3 SINE B2 1 206 -10 5 999 289 239 0 0 chr11 54288458 54288525 -67555331 + ID4_ SINE ID 1 67 -16 5 999 572 243 78 10 chr11 54288625 54288829 -67555027 + Charlie1a DNA MER1_type 1237 1454 -1 5 999 324 73 0 0 chr11 54288944 54288985 -67554871 + tRNA-Gly-GGA tRNA tRNA 1 41 -34 5 999 672 177 25 19 chr11 54290406 54290567 -67553289 - Lx4B LINE L1 -7 7051 6890 5 999 390 191 56 19 chr11 54290571 54290678 -67553178 - Lx4B LINE L1 -281 6777 6667 5 999 472 294 57 25 chr11 54291133 54291290 -67552566 + RSINE1 SINE B4 3 164 -1 5 999 666 211 31 0 chr11 54291307 54291435 -67552421 - B1_Mur1 SINE Alu -7 142 11 5 999 762 271 11 38 chr11 54291677 54291942 -67551914 - L1MB1 LINE L1 -39 6129 5872 5 999 1089 221 0 19 chr11 54291980 54292192 -67551664 + B3 SINE B2 2 209 -7 5 999 973 249 102 11 chr11 54292323 54292685 -67551171 - L1MB1 LINE L1 -1144 4996 4602 5 999 459 0 0 0 chr11 54292827 54292878 -67550978 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 999 447 321 79 14 chr11 54292907 54293046 -67550810 + RSINE1 SINE B4 3 150 -15 5 999 722 259 114 0 chr11 54293183 54293376 -67550480 - B3 SINE B2 0 216 2 5 999 209 108 0 26 chr11 54293415 54293453 -67550403 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 5 999 26 50 0 0 chr11 54293708 54293748 -67550108 + AT_rich Low_complexity Low_complexity 1 40 0 5 999 1651 21 5 0 chr11 54295468 54295660 -67548196 + B2_Mm1t SINE B2 1 193 0 5 999 243 0 0 0 chr11 54295957 54295984 -67547872 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 999 819 123 8 0 chr11 54297157 54297287 -67546569 + B1_Mus2 SINE Alu 17 147 0 5 999 201 196 0 0 chr11 54297289 54297340 -67546516 + A-rich Low_complexity Low_complexity 1 51 0 5 999 24 32 0 0 chr11 54297357 54297388 -67546468 + AT_rich Low_complexity Low_complexity 1 31 0 5 999 1265 73 28 11 chr11 54297463 54297642 -67546214 + B2_Mm2 SINE B2 5 186 -9 5 999 223 279 124 34 chr11 54297840 54297929 -67545927 - MIRm SINE MIR -12 264 168 5 999 489 148 79 18 chr11 54298202 54298367 -67545489 + GA-rich Low_complexity Low_complexity 5 179 0 5 999 315 345 75 14 chr11 54298367 54298514 -67545342 + HAL1-3A_ME LINE L1 2284 2439 -419 5 999 242 216 45 11 chr11 54298534 54298623 -67545233 + Lx9 LINE L1 7551 7642 -2 5 999 382 350 101 50 chr11 54298767 54299167 -67544689 - LTR16B2 LTR ERVL -23 457 37 5 999 269 294 0 56 chr11 54299292 54299364 -67544492 - Charlie1b DNA MER1_type -452 71 4 5 999 1155 176 9 39 chr11 54299953 54300184 -67543672 + URR1A DNA MER1_type 2 225 -1 5 999 544 202 153 0 chr11 54300274 54300398 -67543458 - B1_Mur1 SINE Alu -5 144 2 5 999 573 167 0 0 chr11 54300730 54300826 -67543030 + PB1D9 SINE Alu 20 115 -5 5 999 305 353 12 0 chr11 54301994 54302079 -67541777 - PB1D10 SINE Alu -31 86 1 5 999 310 296 0 24 chr11 54302226 54302309 -67541547 - ID4 SINE ID -2 81 1 5 999 724 272 15 40 chr11 54303054 54303253 -67540603 - RMER30 DNA MER1_type -2 200 7 5 999 1233 34 0 0 chr11 54303342 54303488 -67540368 + B1_Mus2 SINE Alu 2 147 0 5 999 210 194 0 0 chr11 54303632 54303704 -67540152 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 999 520 243 90 6 chr11 54304560 54304738 -67539118 - L1MB3 LINE L1 -2 6181 5989 5 999 545 222 0 0 chr11 54304910 54305009 -67538847 - B3A SINE B2 -96 102 4 5 999 1201 280 44 70 chr11 54305013 54305197 -67538659 - L1MB3 LINE L1 -216 5967 5792 5 999 995 270 86 22 chr11 54305197 54305466 -67538390 + B4A SINE B4 1 286 -6 5 999 1201 280 44 70 chr11 54305466 54305784 -67538072 - L1MB3 LINE L1 -392 5791 5478 5 999 568 267 93 21 chr11 54305919 54306252 -67537604 - L1M4 LINE L1 -765 5381 5025 5 999 224 30 30 0 chr11 54307275 54307308 -67536548 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 999 257 277 181 42 chr11 54307401 54307567 -67536289 - L2 LINE L2 -1170 2249 2061 5 999 216 97 0 0 chr11 54307776 54307807 -67536049 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 999 29 0 0 0 chr11 54308010 54308039 -67535817 + AT_rich Low_complexity Low_complexity 1 29 0 5 999 378 0 0 0 chr11 54308656 54308698 -67535158 + (CTTTG)n Simple_repeat Simple_repeat 4 45 0 5 999 189 0 0 0 chr11 54309517 54309538 -67534318 + (T)n Simple_repeat Simple_repeat 1 21 0 5 999 341 293 62 35 chr11 54309715 54309860 -67533996 + B1F SINE Alu 1 149 0 5 999 234 236 26 65 chr11 54310058 54310135 -67533721 + MTC-int LTR MaLR 494 567 -691 5 999 381 190 101 0 chr11 54310347 54310426 -67533430 - PB1D10 SINE Alu -7 110 24 5 999 529 305 58 24 chr11 54310733 54310938 -67532918 + B3 SINE B2 1 212 -4 5 999 24 106 0 0 chr11 54310939 54311033 -67532823 + AT_rich Low_complexity Low_complexity 1 94 0 5 999 687 212 29 0 chr11 54311070 54311207 -67532649 - B1F1 SINE Alu -7 142 2 5 999 1891 119 109 6 chr11 54311864 54312193 -67531663 - Lx4A LINE L1 0 7058 6696 5 999 206 408 20 20 chr11 54312562 54312712 -67531144 - MIR3 SINE MIR -14 194 45 5 999 1150 61 14 0 chr11 54314827 54314975 -67528881 + B1_Mur4 SINE Alu 1 150 0 5 999 180 0 0 0 chr11 54315335 54315355 -67528501 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 999 367 220 176 0 chr11 54317287 54317378 -67526478 + RSINE1 SINE B4 10 116 -49 5 999 1144 49 0 20 chr11 54317524 54317671 -67526185 + B1_Mus1 SINE Alu 5 148 0 5 999 514 266 147 40 chr11 54318654 54319049 -67524807 - L1M4 LINE L1 -1776 4370 3934 5 999 23 0 0 0 chr11 54319165 54319188 -67524668 + AT_rich Low_complexity Low_complexity 1 23 0 5 999 2973 133 69 9 chr11 54319195 54319719 -67524137 - Lx4A LINE L1 -3 7055 6501 5 999 2982 59 99 10 chr11 54319719 54320235 -67523621 - L1_Mur2 LINE L1 -4152 1725 1162 5 999 295 307 43 93 chr11 54320235 54320320 -67523536 - RLTR20B1 LTR ERVK 0 563 476 5 999 390 42 0 0 chr11 54320320 54320368 -67523488 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 999 1799 232 612 93 chr11 54320368 54320496 -67523360 - RLTR20B1 LTR ERVK -88 475 282 5 999 1443 49 38 0 chr11 54320496 54320681 -67523175 - B2_Mm1a SINE B2 -1 192 1 5 999 1799 177 13 93 chr11 54320681 54320777 -67523079 - RLTR20B1 LTR ERVK -282 281 197 5 999 1592 44 10 0 chr11 54320777 54320981 -67522875 - L1_Mus1 LINE L1 0 6567 6362 5 999 1799 177 13 93 chr11 54320981 54321195 -67522661 - RLTR20B1 LTR ERVK -367 196 1 5 999 3605 100 36 8 chr11 54321195 54321717 -67522139 - L1_Mur2 LINE L1 -5923 789 253 5 999 979 115 14 0 chr11 54322336 54322475 -67521381 - B1_Mus1 SINE Alu -6 142 2 5 999 1245 200 97 9 chr11 54322605 54322886 -67520970 + MTD LTR MaLR 12 289 -90 5 999 298 304 150 59 chr11 54323705 54323993 -67519863 + MLT1A0 LTR MaLR 11 339 -35 5 999 385 296 114 8 chr11 54324272 54324560 -67519296 + L1MB4 LINE L1 4030 4365 -1775 5 999 306 266 63 73 chr11 54324608 54324780 -67519076 + B2_Mm2 SINE B2 23 216 0 5 999 328 306 97 52 chr11 54324959 54325249 -67518607 + L1MB4 LINE L1 4726 5028 -1118 5 999 296 250 171 0 chr11 54325344 54325484 -67518372 + L1MB4 LINE L1 5969 6132 -48 5 999 396 278 220 0 chr11 54325494 54325667 -67518189 + ID_B1 SINE B4 2 212 -12 5 999 33 0 0 0 chr11 54325674 54325707 -67518149 + AT_rich Low_complexity Low_complexity 1 33 0 5 999 219 139 0 0 chr11 54325736 54325772 -67518084 + (T)n Simple_repeat Simple_repeat 1 36 0 5 999 1169 55 0 0 chr11 54325772 54325918 -67517938 - B1_Mus2 SINE Alu 0 147 2 5 999 277 164 0 43 chr11 54326297 54326367 -67517489 + (TATG)n Simple_repeat Simple_repeat 2 68 0 5 999 247 275 87 11 chr11 54326423 54326515 -67517341 + L1MB4 LINE L1 6054 6152 -28 5 999 249 108 0 0 chr11 54327764 54327801 -67516055 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 999 22 0 0 0 chr11 54327832 54327854 -67516002 + AT_rich Low_complexity Low_complexity 1 22 0 5 999 364 258 54 0 chr11 54328440 54328533 -67515323 - PB1D7 SINE Alu -5 115 18 5 999 30 45 0 0 chr11 54329876 54329920 -67513936 + AT_rich Low_complexity Low_complexity 1 44 0 5 999 486 120 0 0 chr11 54330375 54330450 -67513406 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 5 999 657 147 0 27 chr11 54332155 54332290 -67511566 + B1_Mur4 SINE Alu 16 148 -2 5 999 24 0 0 0 chr11 54333115 54333139 -67510717 + AT_rich Low_complexity Low_complexity 1 24 0 5 999 183 213 61 41 chr11 54333326 54333375 -67510481 - MIRc SINE MIR -114 154 105 5 999 871 165 227 0 chr11 54333549 54333725 -67510131 + B3 SINE B2 1 216 0 5 999 21 71 0 0 chr11 54333788 54333830 -67510026 + AT_rich Low_complexity Low_complexity 1 42 0 5 999 1006 215 287 21 chr11 54333862 54334182 -67509674 - MTD LTR MaLR -14 405 1 6 999 830 254 97 18 chr11 54334678 54334906 -67508950 + MTEa LTR MaLR 18 263 -116 6 999 381 289 124 15 chr11 54334895 54335032 -67508824 + RSINE1 SINE B4 6 157 -8 6 999 353 282 9 18 chr11 54335067 54335179 -67508677 + B3A SINE B2 3 113 -85 6 999 285 146 0 0 chr11 54335861 54335909 -67507947 + (T)n Simple_repeat Simple_repeat 1 48 0 6 999 201 364 144 0 chr11 54337797 54337992 -67505864 - L2a LINE L2 -4 3422 3200 6 999 928 348 57 51 chr11 54338190 54338387 -67505469 - L2a LINE L2 -338 3081 2882 6 999 378 107 0 0 chr11 54338387 54338443 -67505413 + (CCA)n Simple_repeat Simple_repeat 3 58 0 6 999 928 348 57 51 chr11 54338443 54338809 -67505047 - L2a LINE L2 -538 2881 2515 6 999 255 324 14 0 chr11 54338843 54338914 -67504942 + ID2 SINE ID 9 80 -3 6 999 386 298 93 31 chr11 54338936 54339161 -67504695 - L2a LINE L2 -929 2490 2252 6 999 296 204 62 50 chr11 54339246 54339328 -67504528 + PB1D7 SINE Alu 14 97 -51 6 999 1002 168 5 16 chr11 54339399 54339587 -67504269 + B2_Mm2 SINE B2 1 186 -9 6 999 440 291 150 87 chr11 54339660 54339867 -67503989 + ID_B1 SINE B4 5 224 0 6 999 574 252 87 98 chr11 54339978 54340371 -67503485 + ORR1E LTR MaLR 3 370 0 6 999 496 274 17 0 chr11 54340379 54340496 -67503360 - PB1D7 SINE Alu -1 119 1 6 999 232 335 187 27 chr11 54340754 54340941 -67502915 + ID_B1 SINE B4 8 224 0 6 999 420 269 76 1 chr11 54341308 54341439 -67502417 - B1F SINE Alu -1 148 8 6 999 259 276 115 0 chr11 54341497 54341584 -67502272 - RMER15 LTR ERVL -3 572 476 6 999 712 268 62 0 chr11 54341902 54342081 -67501775 + B3A SINE B2 2 191 -7 6 999 377 211 14 0 chr11 54342309 54342380 -67501476 + PB1D7 SINE Alu 41 112 -8 6 999 638 228 199 0 chr11 54342804 54342975 -67500881 + B3 SINE B2 1 205 -11 6 999 673 97 0 0 chr11 54343403 54343496 -67500360 - ORR1A4 LTR MaLR 0 329 237 6 999 731 172 0 16 chr11 54343484 54343608 -67500248 - ORR1A4 LTR MaLR -207 122 1 6 999 3054 166 74 143 chr11 54343608 54344583 -67499273 - ORR1A4-int LTR MaLR 0 1963 1056 6 999 590 147 18 9 chr11 54344590 54344700 -67499156 - ORR1A4 LTR MaLR -246 148 38 6 999 590 220 61 0 chr11 54344980 54345112 -67498744 - B1_Mur3 SINE Alu -9 140 1 6 999 520 243 45 0 chr11 54345221 54345332 -67498524 + ID_B1 SINE B4 106 221 -3 6 999 2038 192 12 2 chr11 54345664 54346066 -67497790 + Lx LINE L1 6249 6654 0 6 999 319 303 73 0 chr11 54346243 54346352 -67497504 - PB1D10 SINE Alu 0 117 1 6 999 1137 199 142 21 chr11 54346409 54346747 -67497109 - MTEb LTR MaLR 0 379 1 6 999 301 161 116 84 chr11 54346898 54346993 -67496863 + MER2 DNA MER2_type 71 168 -177 6 999 783 147 110 0 chr11 54347003 54347139 -67496717 + ORR1C1 LTR MaLR 3 153 -225 6 999 492 18 0 0 chr11 54347139 54347196 -67496660 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 999 688 122 0 9 chr11 54347206 54347314 -67496542 + ORR1C1 LTR MaLR 260 366 -12 6 999 1207 234 92 34 chr11 54347359 54347708 -67496148 - RLTR14 LTR ERV1 -13 369 1 6 999 324 252 9 28 chr11 54347711 54347817 -67496039 - L1M2 LINE L1 -3162 2981 2878 6 999 889 43 0 0 chr11 54347997 54348114 -67495742 + B1_Mm SINE Alu 31 147 0 6 999 180 0 0 0 chr11 54348114 54348134 -67495722 + (A)n Simple_repeat Simple_repeat 1 20 0 6 999 208 179 0 43 chr11 54348213 54348283 -67495573 + A-rich Low_complexity Low_complexity 2 68 0 6 999 271 229 0 67 chr11 54349549 54349624 -67494232 - L1M4c LINE L1 -1530 5315 5246 6 999 477 226 176 20 chr11 54349746 54349990 -67493866 - L1M4c LINE L1 -3681 3164 2883 6 999 225 296 0 69 chr11 54350004 54350062 -67493794 - ID4_ SINE ID 0 83 30 6 999 331 335 47 61 chr11 54350081 54350377 -67493479 - L1M4c LINE L1 -3970 2880 2589 6 999 265 332 69 43 chr11 54350892 54351052 -67492804 - L1M4c LINE L1 -4353 2496 2335 6 999 823 205 118 11 chr11 54351052 54351239 -67492617 - B3 SINE B2 -8 208 2 6 999 265 332 69 43 chr11 54351239 54351424 -67492432 - L1M4c LINE L1 -4515 2334 2142 6 999 186 133 0 0 chr11 54351643 54351673 -67492183 + (TA)n Simple_repeat Simple_repeat 1 30 0 6 999 324 282 0 13 chr11 54353217 54353296 -67490560 - ID4_ SINE ID -3 80 3 6 999 422 301 166 60 chr11 54353356 54353598 -67490258 + B4 SINE B4 4 271 -21 6 999 21 0 0 0 chr11 54353692 54353713 -67490143 + AT_rich Low_complexity Low_complexity 1 21 0 6 999 195 129 0 0 chr11 54354205 54354236 -67489620 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 999 181 182 42 83 chr11 54354658 54354706 -67489150 - MER5A DNA MER1_type -107 82 37 6 999 558 247 108 0 chr11 54354853 54355019 -67488837 - MER2 DNA MER2_type -23 322 139 6 999 551 292 7 27 chr11 54355336 54355484 -67488372 - ID_B1 SINE B4 0 224 80 6 999 272 399 54 33 chr11 54355516 54355700 -67488156 - MLT1H LTR MaLR -300 249 62 6 999 262 314 0 41 chr11 54356148 54356221 -67487635 + MER97c DNA MER1_type? 110 179 -911 6 999 538 246 46 38 chr11 54356441 54356637 -67487219 + B3A SINE B2 1 195 0 6 999 483 173 0 0 chr11 54357330 54357411 -67486445 + PB1D9 SINE Alu 40 120 0 6 999 306 0 0 0 chr11 54357413 54357447 -67486409 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 999 1779 207 80 8 chr11 54357917 54358308 -67485548 - MTD LTR MaLR -14 405 1 6 999 762 118 110 0 chr11 54358460 54358587 -67485269 + B1_Mus1 SINE Alu 2 142 -6 6 999 1056 41 0 115 chr11 54359065 54359230 -67484626 - B1_Mm SINE Alu 0 147 2 6 999 835 82 142 0 chr11 54359267 54359401 -67484455 + B2_Mm2 SINE B2 2 154 -41 6 999 486 0 0 0 chr11 54359402 54359456 -67484400 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 6 999 2906 129 5 7 chr11 54360394 54360838 -67483018 - RLTR19 LTR ERVK -56 443 1 6 999 241 262 0 0 chr11 54361183 54361244 -67482612 - PB1D9 SINE Alu -58 62 2 6 999 277 250 17 0 chr11 54361565 54361625 -67482231 - B3 SINE B2 -75 141 81 6 999 770 116 56 42 chr11 54361725 54361869 -67481987 + B1_Mus2 SINE Alu 1 146 -1 6 999 275 337 85 75 chr11 54362138 54362350 -67481506 - Charlie1 DNA MER1_type -328 2453 2240 6 999 266 50 25 0 chr11 54362350 54362390 -67481466 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 999 559 151 65 9 chr11 54362394 54362501 -67481355 - B1_Mus2 SINE Alu -8 139 27 6 999 241 336 93 28 chr11 54362514 54362762 -67481094 - Charlie1 DNA MER1_type -581 2200 1937 6 999 437 270 33 67 chr11 54362805 54363015 -67480841 - L1MEg LINE L1 -1481 4665 4463 6 999 318 282 128 23 chr11 54363382 54363600 -67480256 - L1MEg LINE L1 -5106 1136 896 6 999 21 0 0 0 chr11 54363660 54363681 -67480175 + AT_rich Low_complexity Low_complexity 1 21 0 6 999 204 320 38 53 chr11 54363847 54363979 -67479877 - L2 LINE L2 -1867 1552 1423 6 999 410 282 9 18 chr11 54364173 54364285 -67479571 + B1F SINE Alu 3 113 -36 6 999 1199 54 0 0 chr11 54364329 54364476 -67479380 - B1_Mus2 SINE Alu 0 147 1 6 999 1259 185 141 40 chr11 54364478 54364653 -67479203 - RMER17C LTR ERVK 0 410 190 6 999 237 33 0 0 chr11 54364653 54364683 -67479173 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 999 1259 185 141 40 chr11 54364683 54364861 -67478995 - RMER17C LTR ERVK -221 189 22 6 999 427 359 116 12 chr11 54364874 54365125 -67478731 - L2 LINE L2 -2674 745 469 6 999 21 57 0 0 chr11 54365556 54365591 -67478265 + AT_rich Low_complexity Low_complexity 1 35 0 6 999 1450 60 10 19 chr11 54365793 54365998 -67477858 - L1Md_F3 LINE L1 0 6584 6382 6 999 302 292 66 46 chr11 54366825 54366976 -67476880 + MIR SINE MIR 74 227 -35 6 999 27 62 0 0 chr11 54366996 54367044 -67476812 + AT_rich Low_complexity Low_complexity 1 48 0 6 999 330 26 0 0 chr11 54367114 54367153 -67476703 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 999 624 206 75 15 chr11 54367167 54367300 -67476556 - RSINE1 SINE B4 -21 144 4 6 999 1246 27 0 0 chr11 54367440 54367587 -67476269 - B1_Mm SINE Alu 0 147 1 6 999 266 294 35 35 chr11 54368720 54368833 -67475023 - LTR41B LTR ERVL -627 131 19 6 999 285 346 8 30 chr11 54369302 54369433 -67474423 - ERVL-E-int LTR ERVL -656 5011 4884 6 999 630 315 115 67 chr11 54369706 54369996 -67473860 - ERVL-E-int LTR ERVL -1379 4288 3979 6 999 772 285 33 84 chr11 54369996 54370295 -67473561 + B4A SINE B4 1 284 -8 6 999 630 315 115 67 chr11 54370295 54370524 -67473332 - ERVL-E-int LTR ERVL -1689 3978 3744 6 999 1185 160 48 10 chr11 54370766 54370974 -67472882 + B3 SINE B2 1 216 0 6 999 799 191 24 0 chr11 54371164 54371332 -67472524 + Lx LINE L1 6451 6622 -32 6 999 1013 180 209 41 chr11 54371329 54371626 -67472230 + RMER1B Other Other 269 699 -367 6 999 283 294 11 34 chr11 54371627 54371715 -67472141 + B1_Mur2 SINE Alu 41 126 -23 6 999 326 309 140 26 chr11 54371738 54371931 -67471925 + L1M4 LINE L1 3725 3939 -2207 6 999 351 0 0 0 chr11 54372514 54372553 -67471303 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 999 403 201 62 24 chr11 54372993 54373108 -67470748 - B1_Mur3 SINE Alu -31 118 1 6 999 1179 120 27 0 chr11 54373163 54373346 -67470510 - B2_Mm2 SINE B2 -2 193 6 6 999 872 261 42 5 chr11 54373562 54373751 -67470105 - B3 SINE B2 -3 213 18 6 999 25 0 0 0 chr11 54374359 54374384 -67469472 + AT_rich Low_complexity Low_complexity 1 25 0 6 999 451 241 18 18 chr11 54375494 54375608 -67468248 - B3 SINE B2 0 216 103 6 999 1039 37 22 22 chr11 54376174 54376312 -67467544 + B1_Mm SINE Alu 2 139 -8 6 999 217 51 51 0 chr11 54376312 54376351 -67467505 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 999 379 285 107 8 chr11 54376402 54376533 -67467323 + ID_B1 SINE B4 81 224 0 6 999 474 18 0 0 chr11 54376607 54376662 -67467194 + (CATA)n Simple_repeat Simple_repeat 4 58 0 6 999 286 325 64 5 chr11 54376831 54377035 -67466821 + L1MC4 LINE L1 6933 7148 -894 6 999 301 270 97 29 chr11 54377852 54377955 -67465901 + PB1D10 SINE Alu 8 117 0 6 999 30 45 0 0 chr11 54378087 54378131 -67465725 + AT_rich Low_complexity Low_complexity 1 44 0 6 999 343 289 250 13 chr11 54378316 54378632 -67465224 + L1MB7 LINE L1 5499 5890 -294 6 999 604 201 0 92 chr11 54378795 54378937 -67464919 + B1_Mur1 SINE Alu 9 137 -12 6 999 207 0 0 0 chr11 54378985 54379008 -67464848 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 999 270 296 89 0 chr11 54379110 54379245 -67464611 + L1MB7 LINE L1 6022 6168 -16 6 999 696 230 94 30 chr11 54379356 54379558 -67464298 + B3 SINE B2 2 216 0 6 999 223 308 0 0 chr11 54379747 54379812 -67464044 + PB1D10 SINE Alu 52 116 -1 7 999 668 215 207 11 chr11 54379873 54380047 -67463809 + B3 SINE B2 3 210 -6 7 999 1117 82 0 20 chr11 54380257 54380407 -67463449 + B1_Mus1 SINE Alu 2 148 0 7 999 540 257 107 27 chr11 54380672 54380854 -67463002 + B3 SINE B2 24 216 0 7 999 27 49 0 0 chr11 54380856 54380897 -67462959 + AT_rich Low_complexity Low_complexity 1 41 0 7 999 1223 28 14 0 chr11 54380920 54381065 -67462791 - B1_Mus1 SINE Alu 0 148 2 7 999 27 0 0 26 chr11 54381253 54381278 -67462578 + AT_rich Low_complexity Low_complexity 1 25 0 7 999 312 27 0 0 chr11 54381278 54381315 -67462541 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 999 27 0 0 26 chr11 54381315 54381327 -67462529 + AT_rich Low_complexity Low_complexity 1 12 0 7 999 587 171 0 19 chr11 54382918 54383025 -67460831 + PB1D9 SINE Alu 3 107 -13 7 999 423 0 0 0 chr11 54383054 54383101 -67460755 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 999 481 336 14 21 chr11 54383521 54383664 -67460192 - B4A SINE B4 -9 283 142 7 999 365 223 112 26 chr11 54383799 54383951 -67459905 - L1MA4 LINE L1 -381 6621 6457 7 999 266 282 92 72 chr11 54384118 54384466 -67459390 - L1MA4 LINE L1 -692 6310 5956 7 999 357 313 130 6 chr11 54384704 54384800 -67459056 - L1MA4 LINE L1 -1204 5641 5533 7 999 678 47 0 0 chr11 54384800 54384886 -67458970 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 999 366 302 81 5 chr11 54384886 54385136 -67458720 - L1MA4 LINE L1 -1313 5532 5249 7 999 635 273 7 7 chr11 54385160 54385311 -67458545 - B3A SINE B2 -47 151 1 7 999 283 270 0 110 chr11 54385550 54385650 -67458206 + MT2B LTR ERVL 165 253 -348 7 999 600 269 0 25 chr11 54385561 54385683 -67458173 + B1_Mur1 SINE Alu 12 130 -19 7 999 312 289 169 129 chr11 54385724 54386002 -67457854 - B4 SINE B4 0 292 4 7 999 384 299 128 37 chr11 54386154 54386501 -67457355 - L1MA4 LINE L1 -1904 4938 4529 7 999 292 208 56 43 chr11 54386514 54386675 -67457181 - RMER17C LTR ERVK -138 272 110 7 999 876 262 0 74 chr11 54386753 54386955 -67456901 - B4 SINE B4 0 292 106 7 999 570 29 0 0 chr11 54387158 54387226 -67456630 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 999 288 0 0 0 chr11 54387226 54387257 -67456599 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 999 1270 112 37 0 chr11 54387299 54387487 -67456369 + B2_Mm2 SINE B2 1 195 0 7 999 399 289 61 114 chr11 54387549 54387795 -67456061 + B4 SINE B4 46 278 -14 7 999 262 252 121 45 chr11 54387829 54388053 -67455803 - L1MA4 LINE L1 -2980 3865 3625 7 999 332 233 149 22 chr11 54388107 54388368 -67455488 - L1MA4 LINE L1 -3763 3082 2787 7 999 534 216 126 102 chr11 54388940 54389146 -67454710 + B3 SINE B2 1 211 -5 7 999 388 331 16 8 chr11 54389188 54389313 -67454543 - PB1 SINE Alu 0 127 2 7 999 2029 95 3 74 chr11 54390088 54390440 -67453416 - IAPLTR1a_Mm LTR ERVK -10 327 1 7 124 57333 12 11 0 chr11 54390440 54396846 -67447010 - IAPEz-int LTR ERVK 0 6481 3 7 1000 2016 92 3 74 chr11 54396848 54397200 -67446656 - IAPLTR1a_Mm LTR ERVK -10 327 1 7 1000 1027 58 73 0 chr11 54397240 54397377 -67446479 + B1_Mus2 SINE Alu 1 147 0 7 1000 345 307 18 35 chr11 54397395 54397564 -67446292 + L1P5 LINE L1 5552 5717 -439 7 1000 236 327 64 0 chr11 54397562 54397672 -67446184 + L1M1 LINE L1 5683 5799 -504 7 1000 686 296 58 15 chr11 54397690 54397896 -67445960 + B4 SINE B4 34 248 -44 7 1000 272 224 14 29 chr11 54398114 54398183 -67445673 + (TATG)n Simple_repeat Simple_repeat 1 68 0 7 1000 434 206 0 43 chr11 54398516 54398634 -67445222 - B1_Mur1 SINE Alu -3 146 36 7 1000 971 109 7 7 chr11 54398945 54399093 -67444763 - B1_Mus1 SINE Alu 0 148 1 7 1000 266 236 135 0 chr11 54399290 54399379 -67444477 - B1F SINE Alu -8 141 41 7 1000 230 270 32 105 chr11 54399379 54399414 -67444442 - ID_B1 SINE B4 -8 216 102 7 1000 356 320 99 57 chr11 54399529 54400146 -67443710 - L1ME1 LINE L1 -108 6071 5429 7 1000 230 0 0 32 chr11 54400965 54400996 -67442860 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 7 1000 403 309 74 44 chr11 54401070 54401273 -67442583 + MER3 DNA MER1_type 1 209 0 7 1000 1517 274 175 32 chr11 54401939 54402259 -67441597 - Tigger7 DNA MER2_type -1652 839 500 7 1000 3314 38 5 0 chr11 54402259 54402653 -67441203 - MTA_Mm LTR MaLR 0 396 1 7 1000 1517 274 175 32 chr11 54402653 54402813 -67441043 - Tigger7 DNA MER2_type -1992 499 253 7 1000 893 206 125 0 chr11 54402813 54402997 -67440859 + B3 SINE B2 1 207 -9 7 1000 180 0 0 0 chr11 54402999 54403019 -67440837 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1000 1517 274 175 32 chr11 54403019 54403243 -67440613 - Tigger7 DNA MER2_type -2239 252 33 7 1000 398 306 0 27 chr11 54403261 54403372 -67440484 + PB1D7 SINE Alu 11 118 -2 7 1000 432 55 0 0 chr11 54403499 54403554 -67440302 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 7 1000 263 308 15 0 chr11 54403874 54403939 -67439917 + ID4_ SINE ID 6 71 -12 7 1000 23 0 0 0 chr11 54403970 54403993 -67439863 + AT_rich Low_complexity Low_complexity 1 23 0 7 1000 362 311 70 58 chr11 54404095 54404266 -67439590 - B4A SINE B4 -118 174 2 7 1000 351 105 313 17 chr11 54404303 54404418 -67439438 - B2_Mm2 SINE B2 0 195 47 7 1000 1129 68 104 6 chr11 54404465 54404628 -67439228 - B2_Mm1t SINE B2 -14 179 1 7 1000 270 197 16 0 chr11 54405503 54405564 -67438292 - L1M5 LINE L1 -455 5669 5608 7 1000 23 0 0 0 chr11 54405597 54405620 -67438236 + AT_rich Low_complexity Low_complexity 1 23 0 7 1000 21 107 0 0 chr11 54406045 54406129 -67437727 + AT_rich Low_complexity Low_complexity 1 84 0 7 1000 22 35 0 0 chr11 54406999 54407028 -67436828 + AT_rich Low_complexity Low_complexity 1 29 0 7 1000 414 0 0 0 chr11 54408390 54408436 -67435420 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1000 288 0 0 0 chr11 54409445 54409477 -67434379 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1000 480 252 0 43 chr11 54412250 54412366 -67431490 - PB1D9 SINE Alu -7 113 3 7 1000 728 103 9 0 chr11 54413044 54413160 -67430696 + (TC)n Simple_repeat Simple_repeat 2 118 0 7 1000 947 127 6 0 chr11 54413417 54413583 -67430273 - Lx3_Mus LINE L1 -2 7007 6841 7 1000 2142 72 4 0 chr11 54413583 54413862 -67429994 + Lx3_Mus LINE L1 6277 6556 -453 7 1000 180 0 0 0 chr11 54413967 54413987 -67429869 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1000 347 268 104 35 chr11 54414082 54414283 -67429573 - MER33 DNA MER1_type -59 265 51 7 1000 27 0 0 0 chr11 54414419 54414446 -67429410 + AT_rich Low_complexity Low_complexity 1 27 0 7 1000 1171 48 0 0 chr11 54414446 54414591 -67429265 - B1_Mus2 SINE Alu -1 146 2 7 1000 1157 64 0 0 chr11 54415406 54415547 -67428309 + B1_Mus1 SINE Alu 1 141 -7 7 1000 315 0 0 0 chr11 54416096 54416131 -67427725 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1000 1502 77 48 0 chr11 54416131 54416339 -67427517 - Lx2 LINE L1 -5 6992 6775 7 1000 7185 128 33 13 chr11 54416339 54417596 -67426260 - Lx2 LINE L1 -354 6643 5384 7 1000 332 213 0 74 chr11 54417718 54417733 -67426123 + B4 SINE B4 11 25 -267 7 1000 2175 142 52 11 chr11 54417733 54418102 -67425754 - ORR1C2 LTR MaLR 0 384 1 7 1000 332 213 0 74 chr11 54418102 54418167 -67425689 + B4 SINE B4 26 85 -207 7 1000 269 298 106 0 chr11 54418329 54418423 -67425433 + PB1D10 SINE Alu 13 116 -1 7 1000 489 76 0 0 chr11 54418585 54418651 -67425205 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1000 519 271 99 99 chr11 54418799 54419005 -67424851 + MER2 DNA MER2_type 1 223 -122 7 1000 608 313 25 10 chr11 54419005 54419208 -67424648 + B3 SINE B2 1 206 -10 7 1000 519 271 99 99 chr11 54419208 54419345 -67424511 + MER2 DNA MER2_type 224 344 -1 7 1000 29 0 0 0 chr11 54419487 54419516 -67424340 + AT_rich Low_complexity Low_complexity 1 29 0 7 1000 337 309 24 0 chr11 54419568 54419652 -67424204 - RSINE1 SINE B4 -76 89 4 7 1000 4353 118 40 25 chr11 54419850 54420595 -67423261 - RMER6A LTR ERVK 0 756 1 7 1000 248 247 158 21 chr11 54420601 54420696 -67423160 - MER21B LTR ERV1 -86 777 670 7 1000 669 306 119 95 chr11 54420710 54421001 -67422855 - MER21B LTR ERV1 -244 619 316 7 1000 762 144 64 7 chr11 54421001 54421141 -67422715 - B1_Mur3 SINE Alu 0 149 2 7 1000 669 306 119 95 chr11 54421141 54421185 -67422671 - MER21B LTR ERV1 -548 315 276 7 1000 286 217 0 32 chr11 54422180 54422242 -67421614 + CT-rich Low_complexity Low_complexity 6 65 0 7 1000 477 0 0 0 chr11 54422242 54422295 -67421561 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1000 380 331 27 53 chr11 54422333 54422483 -67421373 - B4A SINE B4 -22 270 125 7 1000 279 281 49 152 chr11 54422379 54422543 -67421313 - B1F2 SINE Alu -2 147 1 7 1000 328 283 156 0 chr11 54422563 54422736 -67421120 - L1M5 LINE L1 -3180 2966 2767 7 1000 722 273 120 15 chr11 54422927 54423286 -67420570 - L1MA7 LINE L1 -2 6298 5879 7 1000 619 283 39 26 chr11 54423769 54423925 -67419931 - RSINE1 SINE B4 0 165 8 7 1000 452 279 96 70 chr11 54424433 54424478 -67419378 - CYRA11_Mm Unknown Y-chromosome -224 393 275 7 1000 891 149 119 0 chr11 54424478 54424646 -67419210 + URR1B DNA MER1_type 38 225 0 7 1000 452 279 96 70 chr11 54424646 54424703 -67419153 - CYRA11_Mm Unknown Y-chromosome -224 274 117 7 1000 435 281 10 0 chr11 54424793 54424889 -67418967 - PB1D10 SINE Alu 0 117 21 7 1000 2778 88 26 0 chr11 54425395 54425783 -67418073 + MTB LTR MaLR 3 400 0 7 1000 396 294 145 16 chr11 54425805 54426047 -67417809 - MER33 DNA MER1_type -6 318 46 7 1000 816 296 72 72 chr11 54427393 54427724 -67416132 - MTE2a LTR MaLR -34 345 15 7 1000 223 255 0 0 chr11 54427966 54428013 -67415843 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1000 189 0 0 0 chr11 54428351 54428372 -67415484 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1000 507 303 52 52 chr11 54428707 54428881 -67414975 - B3A SINE B2 -16 182 9 7 1000 240 302 9 77 chr11 54429699 54429806 -67414050 + BC1_Mm scRNA scRNA 4 101 -51 7 1000 262 273 139 25 chr11 54430935 54431014 -67412842 - PB1D10 SINE Alu -24 96 9 7 1000 951 325 24 65 chr11 54431119 54431455 -67412401 - MLT1A0 LTR MaLR 0 365 44 7 1000 789 219 114 5 chr11 54431475 54431668 -67412188 + B3 SINE B2 1 214 -2 7 1000 985 176 23 6 chr11 54431682 54431859 -67411997 + B2_Mm2 SINE B2 2 181 -14 7 1000 764 234 156 11 chr11 54431957 54432143 -67411713 + ID_B1 SINE B4 11 223 -1 7 1000 305 291 138 72 chr11 54432680 54432832 -67411024 - Lx8 LINE L1 -193 7280 7119 8 1000 804 212 76 12 chr11 54432864 54433036 -67410820 - Lx8 LINE L1 -325 7148 6966 8 1000 743 353 144 19 chr11 54433707 54434180 -67409676 - MLT1F LTR MaLR -10 538 7 8 1000 450 0 0 0 chr11 54434276 54434326 -67409530 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 8 1000 1115 63 0 21 chr11 54434328 54434473 -67409383 - B1_Mus1 SINE Alu -6 142 1 8 1000 1509 28 33 0 chr11 54434691 54434873 -67408983 - B2_Mm1a SINE B2 -5 188 1 8 1000 322 247 111 11 chr11 54435632 54435722 -67408134 - B3 SINE B2 -2 214 116 8 1000 186 43 0 0 chr11 54436214 54436237 -67407619 + (CGTG)n Simple_repeat Simple_repeat 4 26 0 8 1000 1019 161 109 52 chr11 54436324 54436534 -67407322 - URR1B DNA MER1_type -3 222 1 8 1000 1038 294 53 32 chr11 54437080 54437365 -67406491 + B4 SINE B4 2 292 0 8 1000 628 232 24 7 chr11 54437638 54437780 -67406076 + B1_Mur2 SINE Alu 2 148 -1 8 1000 822 240 35 40 chr11 54438090 54438290 -67405566 + B3 SINE B2 1 199 -17 8 1000 246 246 14 0 chr11 54438325 54438394 -67405462 + B3 SINE B2 147 216 0 8 1000 397 306 39 39 chr11 54438438 54438591 -67405265 + RSINE1 SINE B4 4 156 -9 8 1000 22 35 0 0 chr11 54438650 54438679 -67405177 + AT_rich Low_complexity Low_complexity 1 29 0 8 1000 246 339 88 52 chr11 54438741 54438934 -67404922 - MIR SINE MIR -28 234 35 8 1000 390 274 272 6 chr11 54438938 54439096 -67404760 + B3 SINE B2 11 210 -6 8 1000 234 282 8 120 chr11 54440986 54441001 -67402855 + MT2B LTR ERVL 154 220 -381 8 1000 286 286 62 52 chr11 54441001 54441097 -67402759 + PB1D7 SINE Alu 2 98 -22 8 1000 771 294 125 45 chr11 54441268 54441532 -67402324 + B4A SINE B4 6 290 -2 8 1000 317 351 139 8 chr11 54441646 54441890 -67401966 - L1MC4 LINE L1 -214 7828 7553 8 1000 30 0 0 0 chr11 54442169 54442199 -67401657 + AT_rich Low_complexity Low_complexity 1 30 0 8 1000 523 259 174 25 chr11 54442308 54442538 -67401318 - L1MC4 LINE L1 -1085 6957 6662 8 1000 689 240 177 11 chr11 54443273 54443454 -67400402 - B3 SINE B2 -5 211 1 8 1000 344 268 70 0 chr11 54443538 54443609 -67400247 + B4 SINE B4 2 77 -215 8 1000 654 347 70 27 chr11 54443610 54443803 -67400053 + B4A SINE B4 1 204 -88 8 1000 432 0 0 0 chr11 54443803 54443851 -67400005 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1000 654 347 70 27 chr11 54443851 54443915 -67399941 + B4A SINE B4 205 268 -24 8 1000 466 237 41 101 chr11 54443885 54444054 -67399802 + B4 SINE B4 127 285 -7 8 1000 288 91 0 0 chr11 54444128 54444172 -67399684 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1000 300 207 24 12 chr11 54445685 54445768 -67398088 + L1MB5 LINE L1 4911 4994 -1146 8 1000 309 287 108 34 chr11 54445869 54446017 -67397839 + RSINE1 SINE B4 2 160 -5 8 1000 290 181 40 50 chr11 54446106 54446205 -67397651 + L1MB5 LINE L1 5094 5191 -955 8 1000 657 324 30 58 chr11 54446214 54446509 -67397347 + B4A SINE B4 6 292 0 8 1000 1084 272 67 12 chr11 54446521 54447047 -67396809 + L1MB5 LINE L1 5190 5745 -429 8 1000 585 277 44 69 chr11 54447106 54447288 -67396568 + L1MB5 LINE L1 5871 6051 -123 8 1000 724 178 173 30 chr11 54447288 54447485 -67396371 - URR1B DNA MER1_type 0 225 1 8 1000 585 277 44 69 chr11 54447485 54447577 -67396279 + L1MB5 LINE L1 6052 6138 -36 8 1000 247 230 87 54 chr11 54447680 54447772 -67396084 - B4A SINE B4 -16 276 182 8 1000 310 239 257 0 chr11 54447735 54447844 -67396012 - B1F2 SINE Alu -8 141 5 8 1000 377 182 0 15 chr11 54447848 54447915 -67395941 - B4A SINE B4 -226 66 1 8 1000 244 272 196 7 chr11 54448540 54448688 -67395168 + MIR SINE MIR 68 243 -19 8 1000 652 229 57 6 chr11 54449809 54449967 -67393889 - B4 SINE B4 -13 279 114 8 1000 181 222 76 45 chr11 54450144 54450210 -67393646 + L4 LINE RTE 1417 1484 -545 8 1000 353 200 181 60 chr11 54450444 54450577 -67393279 - B1F2 SINE Alu 0 149 1 8 1000 212 322 110 52 chr11 54450446 54450600 -67393256 - B4 SINE B4 -69 223 61 8 1000 24 0 0 0 chr11 54450678 54450702 -67393154 + AT_rich Low_complexity Low_complexity 1 24 0 8 1000 214 255 17 52 chr11 54450825 54450883 -67392973 + MER5B DNA MER1_type 111 166 -12 8 1000 227 299 159 11 chr11 54451042 54451130 -67392726 + MER20 DNA MER1_type 48 148 -71 8 1000 404 204 78 39 chr11 54451177 54451279 -67392577 + PB1D9 SINE Alu 2 107 -13 8 1000 772 181 2 8 chr11 54451866 54452012 -67391844 - B1_Mus2 SINE Alu -1 148 2 8 1000 414 274 53 105 chr11 54452012 54452031 -67391825 - B4 SINE B4 -62 198 69 8 1000 246 128 0 0 chr11 54452198 54452237 -67391619 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 8 1000 276 210 221 58 chr11 54452404 54452490 -67391366 - PB1D10 SINE Alu -1 116 17 8 1000 561 236 130 65 chr11 54452659 54452813 -67391043 - RSINE1 SINE B4 0 165 2 8 1000 583 280 114 11 chr11 54452841 54453025 -67390831 - B3 SINE B2 0 216 14 8 1000 21 36 0 0 chr11 54453493 54453521 -67390335 + AT_rich Low_complexity Low_complexity 1 28 0 8 1000 829 228 25 15 chr11 54454235 54454431 -67389425 + B3A SINE B2 1 198 0 8 1000 313 224 45 0 chr11 54454555 54454622 -67389234 + PB1D10 SINE Alu 48 117 0 8 1000 258 260 41 0 chr11 54454646 54454719 -67389137 + PB1D10 SINE Alu 41 116 -1 8 1000 327 309 59 27 chr11 54454761 54454947 -67388909 + L1MA5 LINE L1 5348 5539 -761 8 1000 1172 74 0 0 chr11 54454962 54455110 -67388746 - B1_Mus1 SINE Alu 0 148 1 8 1000 306 292 86 16 chr11 54455264 54455554 -67388302 + L1MA5 LINE L1 5714 6031 -272 8 1000 497 223 26 18 chr11 54455648 54455762 -67388094 + PB1D10 SINE Alu 3 117 0 8 1000 827 78 17 0 chr11 54456050 54456165 -67387691 + PB1D9 SINE Alu 1 117 -3 8 1000 738 257 37 64 chr11 54457201 54457496 -67386360 + B4A SINE B4 4 290 -2 8 1000 529 288 0 54 chr11 54458571 54458718 -67385138 - B1F1 SINE Alu 0 149 11 8 1000 860 266 6 0 chr11 54458764 54458941 -67384915 - ORR1D2 LTR MaLR -192 178 1 8 1000 292 189 17 60 chr11 54459125 54459201 -67384655 - PB1 SINE Alu -40 87 25 8 1000 231 36 0 0 chr11 54459280 54459308 -67384548 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1000 24 24 0 24 chr11 54459392 54459414 -67384442 + AT_rich Low_complexity Low_complexity 1 22 0 8 1000 832 145 26 40 chr11 54459414 54459565 -67384291 + B1_Mur4 SINE Alu 2 150 0 8 1000 24 24 0 24 chr11 54459565 54459584 -67384272 + AT_rich Low_complexity Low_complexity 1 19 0 8 1000 1085 35 41 41 chr11 54459817 54459964 -67383892 - B1_Mus1 SINE Alu 0 148 2 8 1000 1123 111 11 22 chr11 54460012 54460197 -67383659 + B2_Mm2 SINE B2 3 185 -10 8 1000 463 286 187 0 chr11 54460935 54461117 -67382739 + ID_B1 SINE B4 2 217 -7 8 1000 198 0 0 0 chr11 54462966 54462988 -67380868 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1000 186 43 0 0 chr11 54463202 54463225 -67380631 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1000 335 337 69 0 chr11 54464471 54464572 -67379284 + RSINE1 SINE B4 29 136 -29 8 1000 306 0 0 0 chr11 54465506 54465540 -67378316 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1000 534 275 160 23 chr11 54465620 54465795 -67378061 + ID_B1 SINE B4 1 199 -25 8 1000 579 167 97 15 chr11 54466716 54466850 -67377006 - B1_Mur2 SINE Alu -4 145 1 8 1000 681 132 64 32 chr11 54467068 54467193 -67376663 + B1_Mur4 SINE Alu 22 150 0 8 1000 468 241 45 0 chr11 54467210 54467322 -67376534 + PB1D9 SINE Alu 4 120 0 8 1000 601 248 65 13 chr11 54467364 54467519 -67376337 + RSINE1 SINE B4 3 165 0 8 1000 337 191 10 21 chr11 54467706 54467802 -67376054 + (CATA)n Simple_repeat Simple_repeat 2 96 0 8 1000 21 0 0 0 chr11 54468168 54468189 -67375667 + AT_rich Low_complexity Low_complexity 1 21 0 8 1000 677 312 93 61 chr11 54469303 54469583 -67374273 + B4A SINE B4 4 292 0 8 1000 662 233 0 0 chr11 54469694 54469814 -67374042 + B1_Mur2 SINE Alu 1 120 -29 8 1000 231 204 0 0 chr11 54469818 54469867 -67373989 + GA-rich Low_complexity Low_complexity 1 49 0 8 1000 192 40 0 0 chr11 54469881 54469906 -67373950 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1000 807 244 56 0 chr11 54470278 54470458 -67373398 + B3 SINE B2 2 191 -25 8 1000 453 213 139 42 chr11 54471541 54471784 -67372072 - ORR1E LTR MaLR 0 370 79 8 1000 721 308 88 127 chr11 54471837 54471995 -67371861 - MTE-int LTR MaLR -85 1495 1315 8 1000 775 138 8 24 chr11 54471995 54472121 -67371735 + B1_Mur3 SINE Alu 26 149 0 8 1000 721 308 88 127 chr11 54472121 54472610 -67371246 - MTE-int LTR MaLR -85 1314 753 8 1000 266 280 80 0 chr11 54472719 54472794 -67371062 - ID4_ SINE ID -2 81 1 8 1000 280 280 85 11 chr11 54472834 54472928 -67370928 - PB1D9 SINE Alu -7 113 13 8 1000 283 294 0 115 chr11 54472915 54473011 -67370845 + MT2B2 LTR ERVL 156 240 -344 8 1000 499 258 0 0 chr11 54472930 54473019 -67370837 + B1_Mur3 SINE Alu 5 93 -56 8 1000 1176 151 92 0 chr11 54473164 54473370 -67370486 + URR1A DNA MER1_type 2 226 0 8 1000 925 140 16 81 chr11 54473389 54473575 -67370281 - B2_Mm2 SINE B2 -7 188 15 8 1000 474 300 130 27 chr11 54473643 54473866 -67369990 - MTE-int LTR MaLR -1089 491 246 8 1000 553 282 0 8 chr11 54473884 54474016 -67369840 - MTE-int LTR MaLR -1449 131 1 8 1000 1417 229 141 2 chr11 54474777 54475175 -67368681 - Lx7 LINE L1 -440 7256 6804 8 1000 393 261 0 0 chr11 54475318 54475433 -67368423 + (TA)n Simple_repeat Simple_repeat 1 115 0 8 1000 478 168 137 0 chr11 54475433 54475528 -67368328 - B1_Mur1 SINE Alu -41 108 1 8 1000 811 184 21 28 chr11 54475566 54475711 -67368145 + B3 SINE B2 73 216 0 8 1000 309 288 128 59 chr11 54475776 54475979 -67367877 - L1M5 LINE L1 -1384 4762 4546 8 1000 486 0 0 0 chr11 54476125 54476179 -67367677 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1000 330 217 14 14 chr11 54476347 54476417 -67367439 - L1M7 LINE L1 -5572 646 577 8 1000 1133 62 7 0 chr11 54478123 54478268 -67365588 - B1_Mus2 SINE Alu 0 147 2 8 1000 273 324 21 21 chr11 54478299 54478441 -67365415 - L1ME3A LINE L1 -130 6043 5902 8 1000 306 269 54 0 chr11 54479570 54479663 -67364193 - L1MEg LINE L1 -4621 1387 1290 9 1000 575 318 167 27 chr11 54479718 54480268 -67363588 - L1MEg LINE L1 -4868 1216 590 9 1000 1163 111 0 12 chr11 54480426 54480590 -67363266 - B2_Mm2 SINE B2 -33 162 1 9 1000 330 163 0 0 chr11 54481433 54481508 -67362348 + T-rich Low_complexity Low_complexity 12 86 0 9 1000 1164 82 0 0 chr11 54481508 54481655 -67362201 - B1_Mm SINE Alu 0 147 1 9 1000 954 223 48 0 chr11 54482410 54482616 -67361240 - B3 SINE B2 0 216 1 9 1000 394 250 45 0 chr11 54483004 54483092 -67360764 - ID_B1 SINE B4 -47 177 86 9 1000 226 257 60 68 chr11 54483092 54483120 -67360736 + YREP_Mm Unknown Unknown 222 336 -1476 9 1000 1318 79 23 0 chr11 54483146 54483323 -67360533 + B2_Mm2 SINE B2 1 181 -14 9 1000 28 29 0 0 chr11 54483478 54483513 -67360343 + AT_rich Low_complexity Low_complexity 1 35 0 9 1000 230 234 0 0 chr11 54484197 54484244 -67359612 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1000 377 292 45 52 chr11 54484702 54484720 -67359136 + ID_B1 SINE B4 69 222 -2 9 1000 719 197 51 0 chr11 54484720 54484857 -67358999 + B1_Mur4 SINE Alu 6 149 -1 9 1000 189 0 0 0 chr11 54484858 54484879 -67358977 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 9 1000 397 269 219 15 chr11 54485447 54485643 -67358213 - MIR SINE MIR 0 262 27 9 1000 393 340 0 9 chr11 54486613 54486723 -67357133 + RSINE1 SINE B4 57 165 0 9 1000 1595 31 5 5 chr11 54487030 54487222 -67356634 - B2_Mm1a SINE B2 0 193 2 9 1000 235 287 246 8 chr11 54487960 54488090 -67355766 - Kanga1d DNA Tc2 -376 233 73 9 1000 564 169 21 3 chr11 54488107 54488213 -67355643 + PB1D9 SINE Alu 18 122 -27 9 1000 587 103 56 0 chr11 54490146 54490249 -67353607 + B1_Mm SINE Alu 2 131 -17 9 1000 679 137 0 16 chr11 54490250 54490376 -67353480 + CT-rich Low_complexity Low_complexity 2 125 0 9 1000 850 254 21 0 chr11 54490436 54490629 -67353227 + B3 SINE B2 5 201 -15 9 1000 1006 88 13 26 chr11 54490992 54491143 -67352713 + B2_Mm2 SINE B2 2 150 -45 9 1000 459 147 40 0 chr11 54491095 54491170 -67352686 + B1_Mus2 SINE Alu 65 142 -5 9 1000 1057 119 11 6 chr11 54491170 54491348 -67352508 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 9 1000 302 271 50 26 chr11 54492074 54492187 -67351669 + PB1D10 SINE Alu 32 149 0 9 1000 1139 205 10 0 chr11 54493345 54493545 -67350311 + B3 SINE B2 2 203 -13 9 1000 4739 177 25 13 chr11 54493558 54494401 -67349455 - Lx5 LINE L1 -8 7042 6190 9 1000 614 228 105 6 chr11 54494431 54494603 -67349253 + B3A SINE B2 3 191 -7 9 1000 1155 171 29 10 chr11 54494649 54494856 -67349000 + B3 SINE B2 3 213 -3 9 1000 193 301 188 68 chr11 54495417 54495624 -67348232 - MIR SINE MIR -27 235 4 9 1000 413 322 52 0 chr11 54495718 54495833 -67348023 + ID_B1 SINE B4 79 199 -25 9 1000 221 259 17 0 chr11 54495841 54495899 -67347957 + GA-rich Low_complexity Low_complexity 2 60 0 9 1000 270 309 170 0 chr11 54497038 54497132 -67346724 - LFSINE_Vert SINE SINE -10 449 340 9 1000 293 264 280 9 chr11 54497840 54497947 -67345909 + ID_B1 SINE B4 83 218 -6 9 1000 542 227 8 0 chr11 54498001 54498120 -67345736 + PB1D9 SINE Alu 1 120 0 9 1000 446 220 89 10 chr11 54499117 54499218 -67344638 - B1_Mur2 SINE Alu -40 109 1 9 1000 254 240 83 119 chr11 54499121 54499230 -67344626 - MT2B LTR ERVL -343 258 154 9 1000 884 139 25 2 chr11 54499260 54499423 -67344433 - B2_Mm1t SINE B2 -42 174 1 9 1000 291 222 43 61 chr11 54499462 54499577 -67344279 + PB1D7 SINE Alu 1 113 -7 9 1000 1261 34 0 0 chr11 54499706 54499852 -67344004 + B1_Mus2 SINE Alu 2 147 0 9 1000 304 290 100 11 chr11 54500000 54500174 -67343682 + B4A SINE B4 41 238 -54 1 1000 192 40 0 0 chr11 54500174 54500199 -67343657 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1000 270 325 124 14 chr11 54500199 54500233 -67343623 + B4 SINE B4 239 272 -20 1 1000 192 40 0 0 chr11 54500245 54500270 -67343586 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1000 192 40 0 0 chr11 54500316 54500341 -67343515 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1000 820 117 19 13 chr11 54500364 54500520 -67343336 - L1_Mus3 LINE L1 0 6638 6482 4 1000 22 0 0 0 chr11 54500882 54500904 -67342952 + AT_rich Low_complexity Low_complexity 1 22 0 5 1000 257 271 121 48 chr11 54501842 54501966 -67341890 + MER5A DNA MER1_type 29 161 -28 6 1000 506 245 131 54 chr11 54502877 54503045 -67340811 + B4A SINE B4 112 292 0 7 1000 531 150 17 86 chr11 54504116 54504233 -67339623 - PB1D9 SINE Alu 0 120 12 8 1000 972 141 0 33 chr11 54505324 54505348 -67338508 - B2_Mm2 SINE B2 -16 179 158 9 1000 279 0 0 0 chr11 54505348 54505379 -67338477 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1000 1026 103 0 13 chr11 54505379 54505537 -67338319 - B2_Mm1a SINE B2 -35 158 3 1 1000 366 23 0 0 chr11 54505632 54505675 -67338181 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1 1000 249 33 0 0 chr11 54506758 54506788 -67337068 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1000 1193 48 0 20 chr11 54506788 54506938 -67336918 - B1_Mm SINE Alu 0 147 1 1 1000 1239 27 0 20 chr11 54507027 54507178 -67336678 + B1_Mus1 SINE Alu 1 148 0 1 1000 281 212 192 0 chr11 54507212 54507311 -67336545 + PB1D9 SINE Alu 1 118 -2 1 1000 226 333 53 0 chr11 54508203 54508278 -67335578 + ID4_ SINE ID 5 83 0 1 1000 458 155 0 33 chr11 54508401 54508521 -67335335 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 1000 277 319 23 113 chr11 54508890 54509067 -67334789 + B4A SINE B4 130 290 -2 1 1000 317 268 0 7 chr11 54509072 54509211 -67334645 + (CA)n Simple_repeat Simple_repeat 2 139 0 2 1000 488 231 222 7 chr11 54509229 54509364 -67334492 + RSINE1 SINE B4 2 165 0 2 1000 823 209 101 10 chr11 54510487 54510685 -67333171 + B3 SINE B2 1 216 0 2 1000 546 300 5 82 chr11 54512869 54512955 -67330901 + ID_B1 SINE B4 13 91 -133 2 1000 1220 41 7 0 chr11 54512955 54513101 -67330755 + B1_Mm SINE Alu 1 147 0 2 1000 546 300 5 82 chr11 54513101 54513210 -67330646 + ID_B1 SINE B4 92 193 -31 2 1000 246 312 26 0 chr11 54514477 54514554 -67329302 - Lx8 LINE L1 -186 7287 7209 2 1000 520 292 46 0 chr11 54514898 54515028 -67328828 + RSINE1 SINE B4 24 159 -6 2 1000 422 200 63 0 chr11 54515054 54515149 -67328707 - B1_Mur2 SINE Alu -9 140 40 2 1000 270 0 0 0 chr11 54515266 54515296 -67328560 + (TAA)n Simple_repeat Simple_repeat 3 32 0 2 1000 230 250 0 18 chr11 54515617 54515674 -67328182 + B1_Mur4 SINE Alu 18 73 -77 2 1000 703 125 243 0 chr11 54515685 54515829 -67328027 + B2_Mm1t SINE B2 1 179 -14 3 1000 665 41 0 85 chr11 54515839 54515945 -67327911 - L1_Mus1 LINE L1 0 6567 6471 3 1000 267 103 0 0 chr11 54515959 54515998 -67327858 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1000 356 106 30 0 chr11 54516000 54516066 -67327790 + B1_Mus2 SINE Alu 80 147 0 3 1000 225 0 0 0 chr11 54516066 54516091 -67327765 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1000 1339 73 44 22 chr11 54516332 54516514 -67327342 - B2_Mm2 SINE B2 -7 188 3 3 1000 681 199 24 8 chr11 54516577 54516733 -67327123 - MERVL_2A-int LTR ERVL -5173 588 390 3 1000 759 172 0 0 chr11 54516736 54516864 -67326992 + B1_Mus1 SINE Alu 1 128 -20 3 1000 710 34 0 0 chr11 54516870 54516959 -67326897 + B1_Mus2 SINE Alu 53 141 -6 3 1000 351 323 180 69 chr11 54517182 54517264 -67326592 - Lx8 LINE L1 -234 7239 7155 2 1000 333 0 0 0 chr11 54517264 54517301 -67326555 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1000 351 323 180 69 chr11 54517301 54517757 -67326099 - Lx8 LINE L1 -319 7154 6641 2 1000 408 294 93 0 chr11 54517759 54517914 -67325942 + Lx7 LINE L1 5646 5846 -1850 4 1000 332 247 0 49 chr11 54517914 54517995 -67325861 + ID4 SINE ID 7 83 0 4 1000 314 255 40 60 chr11 54517995 54518014 -67325842 + ID_B1 SINE B4 7 104 -120 4 1000 544 213 56 0 chr11 54518201 54518309 -67325547 + PB1D9 SINE Alu 1 114 -6 4 1000 254 267 39 26 chr11 54518396 54518473 -67325383 - B3A SINE B2 -94 104 27 4 1000 684 191 87 14 chr11 54518475 54518613 -67325243 - B1_Mur1 SINE Alu 0 149 2 4 1000 698 274 64 5 chr11 54519161 54519363 -67324493 - B3 SINE B2 0 216 3 4 1000 241 258 9 102 chr11 54519574 54519601 -67324255 + MT2B LTR ERVL 140 156 -445 4 1000 313 263 14 2 chr11 54519601 54519696 -67324160 + PB1D9 SINE Alu 1 96 -51 4 1000 426 69 0 0 chr11 54519756 54519814 -67324042 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1000 423 0 0 0 chr11 54519818 54519865 -67323991 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1000 216 0 0 0 chr11 54519898 54519922 -67323934 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1000 701 93 0 9 chr11 54519937 54520045 -67323811 - B2_Mm2 SINE B2 -88 107 1 5 1000 1360 86 21 5 chr11 54520047 54520235 -67323621 - B2_Mm2 SINE B2 -3 192 2 5 1000 317 266 103 40 chr11 54520336 54520499 -67323357 - MLT1G3 LTR MaLR -23 572 418 5 1000 661 202 70 0 chr11 54520801 54520959 -67322897 - URR1A DNA MER1_type 0 226 58 5 1000 793 150 120 0 chr11 54520995 54521128 -67322728 + B1_Mur2 SINE Alu 1 149 0 5 1000 3895 140 48 11 chr11 54521180 54521831 -67322025 - RLTR33 LTR ERVK -1 677 3 5 1000 721 199 0 0 chr11 54523938 54524069 -67319787 + RLTR42-int LTR ERVK 1050 1180 -4342 5 1000 183 129 0 0 chr11 54524382 54524413 -67319443 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 5 1000 290 190 0 0 chr11 54524849 54524907 -67318949 + MTEa LTR MaLR 318 375 -4 5 1000 933 79 0 0 chr11 54525656 54525782 -67318074 - B1_Mus1 SINE Alu -21 127 2 6 1000 410 216 0 121 chr11 54525681 54525797 -67318059 - MT2B LTR ERVL -345 256 155 6 1000 371 226 12 0 chr11 54525865 54525949 -67317907 + ORR1C2 LTR MaLR 1 85 -293 6 15 455 244 146 34 chr11 54525951 54526184 -67317672 - L1M5 LINE L1 -352 5821 5563 6 1001 1290 266 36 69 chr11 54526325 54526849 -67317007 + RLTR12B LTR ERVK 2 508 -20 6 1001 276 316 13 0 chr11 54527008 54527084 -67316772 - ID4 SINE ID -6 77 1 6 1001 984 169 104 133 chr11 54527139 54527447 -67316409 + ORR1C2 LTR MaLR 78 376 -8 6 1001 22 35 0 0 chr11 54527780 54527809 -67316047 + AT_rich Low_complexity Low_complexity 1 29 0 6 1001 2091 108 88 13 chr11 54527862 54528239 -67315617 - RMER6A LTR ERVK -8 748 344 6 1001 2255 85 3 9 chr11 54528241 54528562 -67315294 + ORR1A2 LTR MaLR 1 319 -8 6 1001 1241 95 32 8 chr11 54528573 54528800 -67315056 - RMER6A LTR ERVK -425 331 54 6 1001 570 200 0 43 chr11 54529151 54529266 -67314590 - PB1D9 SINE Alu -9 111 2 6 1001 279 0 0 0 chr11 54529356 54529387 -67314469 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1001 710 164 0 54 chr11 54529410 54529539 -67314317 - B3A SINE B2 -76 122 1 7 1001 361 256 33 0 chr11 54529654 54529744 -67314112 - RSINE1 SINE B4 -29 136 44 7 1001 255 171 22 165 chr11 54530257 54530348 -67313508 + PB1 SINE Alu 34 111 -16 7 1001 859 98 67 8 chr11 54530415 54530549 -67313307 - B1_Mus2 SINE Alu -5 142 1 7 1001 1040 63 41 27 chr11 54530686 54530832 -67313024 - B1_Mus1 SINE Alu 0 148 1 7 1001 234 0 0 0 chr11 54532115 54532141 -67311715 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 7 1001 21 0 0 0 chr11 54533137 54533158 -67310698 + AT_rich Low_complexity Low_complexity 1 21 0 7 1001 884 169 0 39 chr11 54533272 54533426 -67310430 - B1_Mur2 SINE Alu 0 149 2 7 1001 215 299 38 38 chr11 54534110 54534190 -67309666 - PB1D10 SINE Alu -1 116 37 7 1001 762 205 121 65 chr11 54534775 54535098 -67308758 - BGLII_B LTR ERVK 0 441 101 8 1001 207 100 0 0 chr11 54535460 54535490 -67308366 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 8 1001 725 180 56 28 chr11 54536494 54536637 -67307219 - B1_Mur2 SINE Alu -1 148 2 8 1001 207 0 0 0 chr11 54537628 54537651 -67306205 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1001 302 291 38 0 chr11 54537660 54537739 -67306117 - PB1D10 SINE Alu -28 89 8 8 1001 400 173 64 55 chr11 54538146 54538256 -67305600 - PB1D10 SINE Alu -3 114 4 8 1001 192 77 0 0 chr11 54538790 54538816 -67305040 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1001 588 29 0 0 chr11 54538816 54538885 -67304971 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 1001 424 310 7 52 chr11 54539040 54539193 -67304663 - RSINE1 SINE B4 -17 148 3 8 1001 450 210 133 8 chr11 54539303 54539346 -67304510 - B1_Mur2 SINE Alu -12 137 94 8 1001 423 0 0 0 chr11 54539346 54539393 -67304463 + (TATG)n Simple_repeat Simple_repeat 2 48 0 9 1001 450 210 133 8 chr11 54539393 54539469 -67304387 - B1_Mur2 SINE Alu -56 93 3 8 1001 270 215 15 15 chr11 54541252 54541318 -67302538 - PB1D10 SINE Alu -18 99 34 9 1001 345 304 78 39 chr11 54541697 54541851 -67302005 - B3 SINE B2 -34 182 23 9 1001 1476 169 72 107 chr11 54542919 54543310 -67300546 + ORR1C1 LTR MaLR 1 377 -1 9 1001 577 226 90 123 chr11 54543589 54543679 -67300177 + ID SINE ID 4 88 -136 9 1001 2731 73 30 3 chr11 54543679 54544049 -67299807 + L1Md_F2 LINE L1 6202 6581 -1 9 1001 577 226 90 123 chr11 54544049 54544170 -67299686 + ID_B1 SINE B4 89 208 -16 9 1001 398 94 16 0 chr11 54544170 54544234 -67299622 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 9 1001 245 319 109 5 chr11 54544308 54544500 -67299356 + L1M5 LINE L1 4573 4784 -1362 9 1001 508 205 0 57 chr11 54544732 54544856 -67299000 + PB1D10 SINE Alu 1 117 0 9 1001 370 281 21 0 chr11 54544985 54545081 -67298775 + B4A SINE B4 106 203 -89 9 1001 531 241 136 103 chr11 54545257 54545390 -67298466 + ID_B1 SINE B4 4 146 -78 1 1001 517 131 162 0 chr11 54545390 54545489 -67298367 + PB1D9 SINE Alu 5 119 -1 1 1001 531 241 136 103 chr11 54545489 54545568 -67298288 + ID_B1 SINE B4 147 223 -1 1 1001 727 252 7 7 chr11 54545568 54545712 -67298144 + RSINE1 SINE B4 2 145 -20 1 1001 24 32 0 0 chr11 54545718 54545749 -67298107 + AT_rich Low_complexity Low_complexity 1 31 0 1 1001 2248 58 10 16 chr11 54545788 54546101 -67297755 + ORR1A2 LTR MaLR 1 311 -16 1 1001 509 131 0 21 chr11 54546586 54546680 -67297176 + GA-rich Low_complexity Low_complexity 2 93 0 1 1001 270 253 45 11 chr11 54547084 54547172 -67296684 - MTEb LTR MaLR 0 379 289 1 1001 182 232 147 0 chr11 54548034 54548129 -67295727 + L2 LINE L2 2863 2971 -448 1 1001 760 300 28 24 chr11 54549232 54549519 -67294337 + B4A SINE B4 2 289 -3 1 1001 282 272 70 9 chr11 54549610 54549725 -67294131 + L1MCa LINE L1 20 141 -6367 1 1001 584 167 17 34 chr11 54549966 54550084 -67293772 + B1_Mur1 SINE Alu 2 117 -32 1 1001 747 223 144 30 chr11 54550084 54550320 -67293536 + Lx8 LINE L1 6851 7113 -360 1 1001 609 227 31 0 chr11 54550542 54550670 -67293186 + RSINE1 SINE B4 15 146 -19 1 1001 312 132 0 0 chr11 54550703 54550723 -67293133 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1001 1182 61 14 0 chr11 54550723 54550871 -67292985 + B1_Mur4 SINE Alu 1 150 0 1 1001 312 132 0 0 chr11 54550871 54550903 -67292953 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1001 1395 83 6 0 chr11 54551092 54551273 -67292583 + B2_Mm1a SINE B2 1 182 -11 1 1001 22 70 0 0 chr11 54552233 54552276 -67291580 + AT_rich Low_complexity Low_complexity 1 43 0 1 1001 1926 164 77 15 chr11 54552629 54553018 -67290838 - MTC LTR MaLR -8 413 1 1 1001 368 204 233 0 chr11 54553306 54553409 -67290447 - B1_Mur2 SINE Alu -22 127 1 1 1001 593 221 50 7 chr11 54553469 54553610 -67290246 - B1F2 SINE Alu 0 149 3 1 1001 1087 78 0 14 chr11 54555395 54555538 -67288318 + B1_Mus2 SINE Alu 2 142 -5 1 1001 518 248 51 108 chr11 54556055 54556093 -67287763 + B4 SINE B4 56 220 -71 1 1001 1044 66 0 0 chr11 54556093 54556230 -67287626 + B1_Mus1 SINE Alu 6 142 -6 1 1001 459 52 0 0 chr11 54556232 54556290 -67287566 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 1 1001 395 282 111 0 chr11 54556313 54556430 -67287426 + RSINE1 SINE B4 4 133 -32 1 1001 315 241 79 14 chr11 54556445 54556584 -67287272 - L1MA6 LINE L1 -131 6169 6022 1 1001 3294 43 8 0 chr11 54556906 54557303 -67286553 - MTB LTR MaLR 0 400 1 1 1001 818 118 15 7 chr11 54557341 54557478 -67286378 + B1_Mur4 SINE Alu 13 150 0 1 1001 478 170 45 11 chr11 54557753 54557842 -67286014 + ID_B1 SINE B4 128 219 -5 1 1001 284 0 0 27 chr11 54557870 54557907 -67285949 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1001 180 0 0 0 chr11 54558398 54558418 -67285438 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1001 300 323 61 0 chr11 54558422 54558521 -67285335 - PB1 SINE Alu -12 115 11 1 1001 601 283 12 35 chr11 54558546 54558628 -67285228 - B3A SINE B2 -27 171 92 1 1001 369 0 0 0 chr11 54558628 54558669 -67285187 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1001 601 283 12 35 chr11 54558669 54558758 -67285098 - B3A SINE B2 -107 91 4 1 1001 897 275 0 5 chr11 54559228 54559429 -67284427 - B3 SINE B2 -12 204 5 1 1001 640 294 7 7 chr11 54559452 54559596 -67284260 - B3A SINE B2 -28 170 27 1 1001 1721 69 8 24 chr11 54559607 54559860 -67283996 - RLTR19-int LTR ERVK -4121 2016 1768 1 1001 627 67 0 0 chr11 54560742 54560831 -67283025 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1001 412 274 44 7 chr11 54560841 54560915 -67282941 - B4 SINE B4 -4 288 212 1 1001 300 27 0 0 chr11 54560915 54560952 -67282904 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1001 412 274 44 7 chr11 54560952 54561013 -67282843 - B4 SINE B4 -81 211 148 1 1001 1400 80 16 0 chr11 54561078 54561266 -67282590 - B2_Mm1t SINE B2 -2 191 1 1 1001 1035 194 66 10 chr11 54561298 54561496 -67282360 - B3 SINE B2 -7 209 1 1 1001 664 263 116 32 chr11 54561587 54561838 -67282018 - B4A SINE B4 -20 272 1 1 1001 270 279 43 96 chr11 54561850 54561892 -67281964 - PB1D10 SINE Alu -8 109 64 1 1001 1553 62 5 0 chr11 54561892 54562084 -67281772 - B2_Mm1a SINE B2 0 193 1 1 1001 270 279 43 96 chr11 54562084 54562098 -67281758 - PB1D10 SINE Alu -54 63 58 1 1001 1213 67 92 0 chr11 54562098 54562262 -67281594 - B2_Mm2 SINE B2 -15 180 2 1 1001 270 279 43 96 chr11 54562262 54562319 -67281537 - PB1D10 SINE Alu -60 57 2 1 1001 609 165 189 0 chr11 54562586 54562713 -67281143 + B3A SINE B2 1 151 -47 1 1001 402 262 77 12 chr11 54562809 54562979 -67280877 - L1M5 LINE L1 -614 5565 5385 1 1001 263 297 189 13 chr11 54562991 54563151 -67280705 - B3 SINE B2 -9 189 1 1 1001 21 36 0 0 chr11 54563219 54563247 -67280609 + AT_rich Low_complexity Low_complexity 1 28 0 1 1001 1148 68 0 7 chr11 54563394 54563541 -67280315 + B1_Mus1 SINE Alu 1 146 -2 1 1001 28 0 0 0 chr11 54565371 54565399 -67278457 + AT_rich Low_complexity Low_complexity 1 28 0 1 1001 464 242 195 18 chr11 54565466 54565630 -67278226 - B3 SINE B2 -23 193 1 1 1001 306 246 37 64 chr11 54565703 54565812 -67278044 - AluG_3 SINE Alu -93 218 27 1 1001 815 157 50 7 chr11 54566313 54566454 -67277402 + B1_Mur4 SINE Alu 4 150 0 1 1001 216 151 19 19 chr11 54566488 54566542 -67277314 + A-rich Low_complexity Low_complexity 1 54 0 1 1001 1301 183 122 6 chr11 54566636 54566971 -67276885 + ORR1D1 LTR MaLR 1 374 0 1 1001 204 125 0 0 chr11 54567051 54567083 -67276773 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1001 1125 211 14 0 chr11 54567370 54567579 -67276277 - B3 SINE B2 -1 215 4 1 1001 510 154 273 0 chr11 54569480 54569590 -67274266 - B1_Mur2 SINE Alu -9 140 1 1 1001 307 304 97 57 chr11 54570374 54570601 -67273255 + MER102a DNA MER1_type 89 324 -6 1 1001 181 320 20 0 chr11 54570693 54570743 -67273113 + MIRc SINE MIR 23 73 -195 1 1001 339 211 39 13 chr11 54571073 54571150 -67272706 + ID4_ SINE ID 3 81 -2 1 1001 227 263 18 0 chr11 54571270 54571327 -67272529 + L1MC LINE L1 5601 5658 -675 1 1001 21 57 0 0 chr11 54571510 54571545 -67272311 + AT_rich Low_complexity Low_complexity 1 35 0 1 1001 455 225 65 7 chr11 54571550 54571689 -67272167 + MER57C2 LTR ERV1 56 202 -232 1 1001 377 322 7 47 chr11 54571927 54572077 -67271779 - RMER30 DNA MER1_type -22 180 37 1 1001 445 288 161 16 chr11 54572130 54572351 -67271505 + B4A SINE B4 2 241 -51 1 1001 501 281 70 32 chr11 54572351 54572509 -67271347 + RSINE1 SINE B4 2 165 0 1 1001 445 288 161 16 chr11 54572509 54572541 -67271315 + B4A SINE B4 242 291 -1 1 1001 210 191 0 0 chr11 54572541 54572583 -67271273 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1001 423 78 0 0 chr11 54572670 54572734 -67271122 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1001 543 31 0 0 chr11 54572906 54572971 -67270885 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1001 315 0 0 0 chr11 54572971 54573005 -67270851 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1001 276 280 58 58 chr11 54573005 54573176 -67270680 + L1ME1 LINE L1 5904 6074 -105 1 1001 241 194 0 41 chr11 54574725 54574822 -67269034 + CT-rich Low_complexity Low_complexity 5 97 0 1 1001 488 266 71 0 chr11 54575681 54575794 -67268062 + RSINE1 SINE B4 26 146 -19 1 1001 195 100 0 0 chr11 54575823 54575853 -67268003 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 1 1001 415 275 13 78 chr11 54575951 54576105 -67267751 - ID_B1 SINE B4 0 224 81 1 1001 514 195 146 0 chr11 54576106 54576229 -67267627 - B1F SINE Alu 0 149 9 1 1001 629 207 41 0 chr11 54576389 54576510 -67267346 + B3 SINE B2 1 126 -90 1 1001 745 174 22 7 chr11 54576624 54576763 -67267093 - B1_Mur3 SINE Alu -7 142 2 1 1001 28 0 0 0 chr11 54576772 54576800 -67267056 + AT_rich Low_complexity Low_complexity 1 28 0 1 1001 310 172 97 65 chr11 54576800 54576924 -67266932 - Lx4B LINE L1 0 7058 6931 1 1001 275 236 56 0 chr11 54577011 54577083 -67266773 + B4A SINE B4 10 85 -207 1 1001 1701 147 149 6 chr11 54578364 54578685 -67265171 + ORR1B2 LTR MaLR 1 367 0 1 1001 346 300 8 76 chr11 54578780 54578899 -67264957 + PB1D10 SINE Alu 7 117 0 1 1001 566 239 46 0 chr11 54579159 54579289 -67264567 - B3 SINE B2 -80 136 1 1 1001 870 249 13 52 chr11 54579363 54579592 -67264264 + Lx9 LINE L1 6974 7193 -451 1 1001 1272 27 0 0 chr11 54579792 54579938 -67263918 + B1_Mus2 SINE Alu 2 147 0 1 1001 1348 67 39 0 chr11 54580045 54580224 -67263632 + B2_Mm2 SINE B2 2 187 -8 1 1001 456 229 117 17 chr11 54580242 54580362 -67263494 + B1_Mur3 SINE Alu 2 133 -16 1 1001 224 100 25 0 chr11 54580366 54580406 -67263450 + (CGGGGG)n Simple_repeat Simple_repeat 2 42 0 1 1001 489 250 90 62 chr11 54580431 54580576 -67263280 + RSINE1 SINE B4 14 162 -3 1 1001 296 270 110 22 chr11 54580613 54580704 -67263152 - PB1D7 SINE Alu 0 120 22 1 1001 381 263 83 40 chr11 54581109 54581297 -67262559 + L1MB7 LINE L1 5633 5865 -319 1 1001 277 274 165 10 chr11 54581918 54582021 -67261835 - B1_Mur2 SINE Alu -1 119 1 1 1001 758 238 87 29 chr11 54582134 54582446 -67261410 + RLTR15 LTR ERVK 14 343 -16 1 1001 494 226 0 0 chr11 54582467 54582560 -67261296 - B1_Mus2 SINE Alu -35 112 20 1 1001 660 197 41 34 chr11 54582583 54582730 -67261126 - B1_Mur4 SINE Alu -1 149 2 1 1001 916 94 306 0 chr11 54583106 54583276 -67260580 + URR1A DNA MER1_type 5 226 0 2 1001 513 0 0 0 chr11 54583359 54583416 -67260440 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1001 445 204 78 39 chr11 54583433 54583586 -67260270 + Lx8 LINE L1 6969 7127 -346 2 1001 357 217 132 44 chr11 54583597 54583756 -67260100 + Lx8 LINE L1 7300 7472 -1 2 1001 234 0 0 0 chr11 54584292 54584318 -67259538 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1001 507 198 40 0 chr11 54584664 54584765 -67259091 - RSINE1 SINE B4 -58 107 3 2 1001 359 241 9 69 chr11 54584968 54585084 -67258772 + PB1D10 SINE Alu 1 109 -8 2 1001 1266 87 27 16 chr11 54585390 54585576 -67258280 - B2_Mm1t SINE B2 -5 188 1 2 1001 282 242 10 0 chr11 54585761 54585833 -67258023 - PB1D10 SINE Alu -51 76 1 2 1001 792 227 29 0 chr11 54586873 54587045 -67256811 + B3A SINE B2 2 178 -20 2 1001 795 194 35 0 chr11 54587100 54587244 -67256612 - B1_Mur2 SINE Alu 0 149 1 2 1001 357 295 28 9 chr11 54587271 54587377 -67256479 + PB1D10 SINE Alu 1 108 -9 2 1001 1123 74 0 0 chr11 54587705 54587853 -67256003 + B1_Mus1 SINE Alu 1 148 0 2 1001 585 263 116 48 chr11 54588462 54588730 -67255126 + B4A SINE B4 1 286 -6 2 1001 587 189 125 8 chr11 54588973 54589101 -67254755 + B1_Mur2 SINE Alu 1 143 -6 2 1001 506 197 41 55 chr11 54589639 54589784 -67254072 + MTD LTR MaLR 262 404 -15 2 1001 279 318 9 36 chr11 54589802 54589913 -67253943 - L2 LINE L2 -557 2862 2755 2 1001 486 346 100 36 chr11 54590160 54590520 -67253336 - L2 LINE L2 -862 2557 2175 2 1001 189 307 179 22 chr11 54590918 54591141 -67252715 - L2 LINE L2 -1813 1606 1349 2 1001 426 20 0 0 chr11 54591356 54591407 -67252449 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1001 244 306 0 23 chr11 54591734 54591764 -67252092 + A-rich Low_complexity Low_complexity 4 33 0 2 1001 644 188 0 74 chr11 54591764 54591913 -67251943 + B1_Mur1 SINE Alu 3 140 -9 2 1001 244 306 0 23 chr11 54591913 54591969 -67251887 + A-rich Low_complexity Low_complexity 34 88 0 2 1001 225 0 0 0 chr11 54592412 54592437 -67251419 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1001 198 0 0 0 chr11 54592576 54592598 -67251258 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1001 284 233 23 11 chr11 54592721 54592808 -67251048 + ID_B1 SINE B4 134 221 -3 2 1001 1022 217 14 9 chr11 54592867 54593081 -67250775 + B3 SINE B2 2 216 0 2 1001 801 182 192 6 chr11 54593118 54593300 -67250556 + B3 SINE B2 1 216 0 2 1001 405 158 0 0 chr11 54593802 54593903 -67249953 + GA-rich Low_complexity Low_complexity 2 102 0 2 1001 2685 281 148 35 chr11 54593906 54594438 -67249418 + Lx8 LINE L1 6197 6748 -725 2 1001 1530 62 5 0 chr11 54594438 54594630 -67249226 - B2_Mm1a SINE B2 0 193 1 2 1001 2685 281 148 35 chr11 54594630 54595198 -67248658 + Lx8 LINE L1 6749 7422 -51 2 1001 1144 76 0 0 chr11 54595362 54595506 -67248350 - B1_Mus1 SINE Alu -2 146 3 2 1001 241 197 256 0 chr11 54595615 54595732 -67248124 - L1MB2 LINE L1 -25 6146 6000 2 1001 200 227 0 43 chr11 54595825 54595871 -67247985 + (CACG)n Simple_repeat Simple_repeat 1 44 0 2 1001 292 258 0 111 chr11 54596518 54596653 -67247203 + MT2B LTR ERVL 145 264 -337 2 1001 757 187 7 21 chr11 54596549 54596691 -67247165 + B1_Mur3 SINE Alu 10 149 0 2 1001 693 221 34 101 chr11 54597063 54597270 -67246586 + B3A SINE B2 2 194 -4 2 1001 657 256 11 60 chr11 54597308 54597480 -67246376 + B3 SINE B2 2 165 -51 2 1001 225 0 0 0 chr11 54597480 54597505 -67246351 + (CATA)n Simple_repeat Simple_repeat 2 26 0 2 1001 25 51 0 0 chr11 54597522 54597561 -67246295 + AT_rich Low_complexity Low_complexity 1 39 0 2 1001 965 159 30 50 chr11 54597569 54597768 -67246088 + B2_Mm2 SINE B2 1 195 0 2 1001 237 211 0 0 chr11 54598290 54598342 -67245514 - ID_B1 SINE B4 -3 221 170 2 1001 226 250 88 0 chr11 54598342 54598358 -67245498 - B1_Mur1 SINE Alu 0 149 76 2 1001 741 184 29 7 chr11 54598426 54598563 -67245293 - B1_Mur1 SINE Alu -8 141 2 2 1001 516 217 0 98 chr11 54598563 54598579 -67245277 - ID_B1 SINE B4 -8 216 79 2 1001 378 322 8 33 chr11 54598933 54599055 -67244801 - ID_B1 SINE B4 -18 206 88 2 1001 324 0 0 0 chr11 54599125 54599161 -67244695 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1001 665 244 56 34 chr11 54599162 54599340 -67244516 - B3A SINE B2 -1 197 16 2 1001 290 203 0 86 chr11 54600336 54600417 -67243439 - tRNA-Ala-GCA tRNA tRNA -1 74 1 2 1001 267 54 0 0 chr11 54601596 54601633 -67242223 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1001 578 243 9 39 chr11 54601648 54601860 -67241996 - ID_B1 SINE B4 -6 218 20 2 1001 448 294 136 39 chr11 54601978 54602360 -67241496 + L2 LINE L2 2533 2951 -468 2 1001 927 192 0 0 chr11 54603228 54603374 -67240482 + B1_Mur4 SINE Alu 3 148 -2 2 1001 497 61 0 58 chr11 54603404 54603491 -67240365 + (GA)n Simple_repeat Simple_repeat 1 82 0 2 1001 499 250 8 16 chr11 54603616 54603738 -67240118 - B1F SINE Alu -15 134 14 2 1001 503 212 193 9 chr11 54603900 54604014 -67239842 + B1_Mur2 SINE Alu 2 136 -13 2 1001 643 246 165 50 chr11 54604477 54604738 -67239118 + B4A SINE B4 1 291 -1 2 1001 436 286 5 58 chr11 54604809 54604998 -67238858 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1001 335 298 7 27 chr11 54605093 54605397 -67238459 + (CA)n Simple_repeat Simple_repeat 1 297 0 2 1001 238 212 106 33 chr11 54605291 54605442 -67238414 + (CATG)n Simple_repeat Simple_repeat 3 164 0 2 1001 205 304 137 17 chr11 54605549 54605666 -67238190 + MIRc SINE MIR 37 167 -101 2 1001 432 234 0 0 chr11 54605875 54605952 -67237904 - ID4_ SINE ID -6 77 1 2 1001 244 339 47 0 chr11 54606094 54606221 -67237635 + MER94 DNA AcHobo 1 133 -1 2 1001 194 368 58 0 chr11 54606600 54606687 -67237169 - L2b LINE L2 -13 3362 3271 2 1001 225 0 0 0 chr11 54606952 54606977 -67236879 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 1001 842 191 0 39 chr11 54606986 54607139 -67236717 - B1_Mur1 SINE Alu -1 148 2 2 1001 637 245 0 53 chr11 54607443 54607535 -67236321 + B1_Mur1 SINE Alu 1 92 -57 2 1001 1146 98 228 0 chr11 54607535 54607719 -67236137 + URR1A DNA MER1_type 1 226 0 2 1001 637 245 0 53 chr11 54607719 54607777 -67236079 + B1_Mur1 SINE Alu 93 143 -6 2 1001 412 204 39 0 chr11 54607868 54607970 -67235886 + B3 SINE B2 7 114 -81 2 1001 371 322 161 3 chr11 54607977 54608155 -67235701 + Lx9 LINE L1 7277 7475 -169 2 1001 1816 136 136 3 chr11 54608155 54608479 -67235377 - ORR1B2 LTR MaLR 0 367 1 2 1001 371 322 161 3 chr11 54608479 54608599 -67235257 + Lx9 LINE L1 7476 7621 -23 2 1001 536 286 65 7 chr11 54608664 54608819 -67235037 + B4 SINE B4 42 205 -87 2 1001 861 184 178 0 chr11 54608838 54609012 -67234844 + B3 SINE B2 1 205 -11 2 1001 414 297 46 26 chr11 54609026 54609178 -67234678 + RSINE1 SINE B4 1 155 -10 2 1001 247 316 0 62 chr11 54609199 54609280 -67234576 + B4 SINE B4 215 290 -2 2 1001 962 278 121 62 chr11 54610383 54610847 -67233009 + MLT1E2 LTR MaLR 137 627 0 2 1001 225 0 0 0 chr11 54610956 54610981 -67232875 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1001 1246 34 0 0 chr11 54610981 54611127 -67232729 - B1_Mus2 SINE Alu 0 147 2 2 1001 726 238 135 38 chr11 54611572 54611891 -67231965 + RMER10A LTR ERVL 80 429 -13 2 1001 270 0 0 0 chr11 54611960 54611990 -67231866 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1001 491 228 40 136 chr11 54612033 54612231 -67231625 - MTD LTR MaLR -51 368 190 2 1001 1615 42 0 10 chr11 54612266 54612460 -67231396 + B2_Mm1a SINE B2 2 193 0 2 1001 260 47 0 85 chr11 54612460 54612507 -67231349 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1001 629 292 27 40 chr11 54612509 54612734 -67231122 - Lx8 LINE L1 -46 7427 7206 2 1001 353 312 156 42 chr11 54612743 54612815 -67231041 - MTD LTR MaLR -209 210 120 2 1001 1433 64 32 0 chr11 54612815 54613002 -67230854 + B2_Mm1a SINE B2 1 193 0 2 1001 353 312 156 42 chr11 54613002 54613096 -67230760 - MTD LTR MaLR -300 119 25 2 1001 299 272 201 22 chr11 54613118 54613257 -67230599 - RSINE1 SINE B4 0 165 2 2 1001 456 35 0 0 chr11 54613856 54613914 -67229942 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 2 1001 821 192 7 0 chr11 54613914 54614053 -67229803 - B1_Mur4 SINE Alu -8 142 3 2 1001 494 252 0 10 chr11 54614095 54614199 -67229657 + PB1D10 SINE Alu 3 105 -12 2 1001 404 19 0 19 chr11 54614199 54614253 -67229603 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 1001 275 329 0 0 chr11 54614415 54614488 -67229368 - B1F2 SINE Alu -70 79 7 2 1001 567 279 25 6 chr11 54614502 54614661 -67229195 + RSINE1 SINE B4 4 165 0 2 1001 185 159 23 0 chr11 54614674 54614718 -67229138 + GA-rich Low_complexity Low_complexity 3 47 0 2 1001 928 219 6 0 chr11 54614723 54614887 -67228969 + B3A SINE B2 5 169 -29 2 1001 401 272 0 0 chr11 54614902 54614983 -67228873 + B3A SINE B2 103 183 -15 2 1001 1067 134 6 0 chr11 54614997 54615176 -67228680 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1001 288 0 0 0 chr11 54615778 54615810 -67228046 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1001 734 284 66 47 chr11 54615943 54616127 -67227729 + B4A SINE B4 14 212 -80 2 1001 486 0 0 0 chr11 54616127 54616181 -67227675 + (TAA)n Simple_repeat Simple_repeat 1 54 0 2 1001 734 284 66 47 chr11 54616181 54616270 -67227586 + B4A SINE B4 213 292 0 2 1001 664 277 0 0 chr11 54616633 54616774 -67227082 - ID_B1 SINE B4 -7 217 77 2 1001 1118 200 19 5 chr11 54617007 54617218 -67226638 + B3 SINE B2 3 216 0 2 1001 217 83 83 0 chr11 54617247 54617295 -67226561 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2 1001 408 198 46 65 chr11 54617675 54617783 -67226073 + PB1D10 SINE Alu 1 106 -11 2 1001 511 167 0 103 chr11 54617799 54617906 -67225950 + B3A SINE B2 100 195 -3 2 1001 546 271 19 56 chr11 54618007 54618101 -67225755 + ID_B1 SINE B4 1 97 -127 3 1001 1708 209 30 8 chr11 54618101 54618463 -67225393 + ORR1D1 LTR MaLR 1 370 -4 3 1001 546 271 19 56 chr11 54618463 54618528 -67225328 + ID_B1 SINE B4 98 154 -70 3 1001 389 195 0 13 chr11 54618532 54618610 -67225246 - B3A SINE B2 -121 77 1 3 1001 533 293 54 57 chr11 54618796 54619129 -67224727 - L1MC2 LINE L1 -176 6168 5837 3 1001 272 114 33 33 chr11 54619176 54619267 -67224589 + T-rich Low_complexity Low_complexity 1 91 0 3 1001 954 136 6 17 chr11 54619308 54619488 -67224368 + GA-rich Low_complexity Low_complexity 1 178 0 3 1001 293 237 9 191 chr11 54619516 54619631 -67224225 - RSINE1 SINE B4 -69 96 3 3 1001 388 250 34 0 chr11 54619778 54619866 -67223990 + ID_B1 SINE B4 133 223 -1 3 1001 608 193 0 9 chr11 54619952 54620062 -67223794 + PB1D9 SINE Alu 1 109 -11 3 1001 222 271 0 0 chr11 54620157 54620205 -67223651 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1001 308 248 0 198 chr11 54620212 54620274 -67223582 - B4A SINE B4 -5 287 226 3 1001 279 0 0 0 chr11 54620274 54620305 -67223551 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1001 308 248 0 198 chr11 54620305 54620336 -67223520 - B4A SINE B4 -67 225 217 3 1001 1051 86 14 0 chr11 54620336 54620475 -67223381 - B1_Mur4 SINE Alu -8 142 2 3 1001 308 248 0 198 chr11 54620475 54620506 -67223350 - B4A SINE B4 -76 216 187 3 1001 734 103 17 0 chr11 54620513 54620630 -67223226 + (CGTG)n Simple_repeat Simple_repeat 1 119 0 3 1001 979 219 87 20 chr11 54620655 54620907 -67222949 - B4A SINE B4 -22 270 2 3 1001 540 232 45 78 chr11 54620986 54621140 -67222716 - B1F2 SINE Alu 0 149 1 3 1001 569 278 0 8 chr11 54621012 54621146 -67222710 - ID_B1 SINE B4 -16 208 76 3 1001 544 230 39 23 chr11 54621526 54621655 -67222201 + RSINE1 SINE B4 4 134 -31 3 1001 369 0 0 0 chr11 54621672 54621713 -67222143 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1001 686 239 6 18 chr11 54621774 54621940 -67221916 - MTD LTR MaLR -236 183 20 3 1001 435 217 113 0 chr11 54621959 54622074 -67221782 + B4 SINE B4 70 197 -95 3 1001 779 129 26 0 chr11 54621979 54622095 -67221761 + B1_Mus1 SINE Alu 10 128 -20 3 1001 685 135 0 16 chr11 54622122 54622250 -67221606 + GA-rich Low_complexity Low_complexity 3 128 0 3 1001 1056 170 11 11 chr11 54622392 54622576 -67221280 + B3A SINE B2 3 186 -12 3 1001 556 219 31 56 chr11 54623292 54623452 -67220404 - RSINE1 SINE B4 -4 161 6 3 1001 531 273 65 32 chr11 54623443 54623598 -67220258 - B4A SINE B4 -50 242 83 3 1001 579 259 98 8 chr11 54623594 54623774 -67220082 - B3A SINE B2 -5 211 20 3 1001 338 290 67 183 chr11 54623864 54624235 -67219621 - L1M5 LINE L1 -3553 2593 2266 3 1001 430 276 55 49 chr11 54625047 54625230 -67218626 + B2_Mm2 SINE B2 7 190 -5 3 1001 642 60 0 0 chr11 54625286 54625369 -67218487 + (TC)n Simple_repeat Simple_repeat 1 83 0 3 1001 213 39 0 0 chr11 54625369 54625394 -67218462 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1001 300 70 0 0 chr11 54625394 54625437 -67218419 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1001 430 165 65 11 chr11 54625696 54625788 -67218068 + ID_B1 SINE B4 81 177 -47 3 1001 1795 213 106 21 chr11 54625791 54626170 -67217686 - MTD LTR MaLR -8 411 1 3 1001 354 146 36 0 chr11 54626170 54626221 -67217635 + ID_B1 SINE B4 172 224 0 3 1001 284 280 73 18 chr11 54626622 54626731 -67217125 + PB1 SINE Alu 1 115 -12 3 1001 659 291 0 0 chr11 54626936 54627084 -67216772 + RSINE1 SINE B4 3 150 -15 3 1001 856 205 16 1 chr11 54627160 54627364 -67216492 - B3A SINE B2 -3 213 1 3 1001 405 249 67 15 chr11 54628264 54628435 -67215421 + B4A SINE B4 2 224 -68 3 1001 321 319 58 48 chr11 54628470 54628658 -67215198 + L1M4b LINE L1 1761 1950 -5384 3 1001 255 208 26 53 chr11 54628734 54628810 -67215046 + L1M4b LINE L1 4708 4781 -2225 3 1001 1516 240 105 75 chr11 54628847 54629369 -67214487 + RMER15 LTR ERVL 1 538 -37 3 1001 933 224 46 71 chr11 54629378 54629618 -67214238 + B4A SINE B4 13 246 -46 3 1001 280 295 53 76 chr11 54629788 54629920 -67213936 + LTR33B LTR ERVL 41 169 -334 3 1001 235 298 0 0 chr11 54630062 54630119 -67213737 + LTR33B LTR ERVL 463 519 -1 3 1001 754 328 71 4 chr11 54630403 54630669 -67213187 + B4A SINE B4 9 292 0 3 1001 198 0 0 0 chr11 54630688 54630710 -67213146 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1001 284 369 58 21 chr11 54630820 54631061 -67212795 - ERVL-E-int LTR ERVL -3522 2145 1896 3 1001 666 305 25 25 chr11 54631080 54631319 -67212537 - ERVL-E-int LTR ERVL -3815 1852 1614 3 1001 1255 282 83 112 chr11 54631438 54632064 -67211792 + RLTR18 LTR ERVK 4 611 -5 3 1001 216 0 0 0 chr11 54632242 54632266 -67211590 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1001 828 274 76 53 chr11 54632266 54632633 -67211223 - RMER15 LTR ERVL -16 559 61 3 1001 631 167 0 137 chr11 54632656 54632802 -67211054 - B1_Mus2 SINE Alu -21 126 1 3 1001 1051 147 93 51 chr11 54632835 54633050 -67210806 - URR1A DNA MER1_type -2 224 1 3 1001 237 242 0 83 chr11 54633059 54633131 -67210725 - RMER15 LTR ERVL -509 66 1 3 1001 180 0 0 0 chr11 54633217 54633237 -67210619 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 3 1001 610 318 21 0 chr11 54633663 54633855 -67210001 - ERVL-E-int LTR ERVL -5098 569 374 3 1001 260 246 15 15 chr11 54633921 54633987 -67209869 - ID4_ SINE ID -16 67 2 3 1001 381 181 72 0 chr11 54633990 54634073 -67209783 - PB1D10 SINE Alu -8 109 21 3 1001 222 322 0 0 chr11 54635103 54635162 -67208694 + (CATG)n Simple_repeat Simple_repeat 4 62 0 3 1001 338 324 114 37 chr11 54635185 54635457 -67208399 - L2 LINE L2 -1269 2150 1858 3 1001 265 331 45 84 chr11 54635512 54635526 -67208330 + B1F1 SINE Alu 1 78 -71 3 1001 314 325 0 61 chr11 54635526 54635657 -67208199 + ID_B1 SINE B4 98 220 -4 3 1001 591 246 199 16 chr11 54635725 54635911 -67207945 + ID_B1 SINE B4 1 220 -4 3 1001 276 351 44 38 chr11 54635922 54636082 -67207774 - L2 LINE L2 -1629 1790 1630 3 1001 778 259 0 0 chr11 54636129 54636276 -67207580 + B1F SINE Alu 2 148 -1 3 1001 491 128 12 0 chr11 54636306 54636392 -67207464 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1001 727 271 79 90 chr11 54636407 54636758 -67207098 - ID_B1 SINE B4 -77 215 1 3 1001 224 131 0 21 chr11 54637426 54637473 -67206383 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1001 204 67 0 0 chr11 54637478 54637508 -67206348 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1001 189 0 0 0 chr11 54637510 54637531 -67206325 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1001 813 267 5 10 chr11 54637559 54637756 -67206100 - B3A SINE B2 -2 196 1 3 1001 317 281 49 0 chr11 54638345 54638444 -67205412 + PB1D10 SINE Alu 2 119 -1 3 1001 505 264 40 86 chr11 54638569 54638657 -67205199 - B4A SINE B4 0 292 215 3 1001 520 146 89 18 chr11 54638657 54638769 -67205087 - PB1D9 SINE Alu 0 120 1 3 1001 505 264 40 86 chr11 54638769 54638854 -67205002 - B4A SINE B4 -78 214 127 3 1001 259 250 0 0 chr11 54638870 54638930 -67204926 - B4A SINE B4 -232 60 1 3 1001 788 52 252 0 chr11 54638989 54639104 -67204752 + B1_Mus1 SINE Alu 5 148 0 3 1001 217 77 14 71 chr11 54639106 54639176 -67204680 + A-rich Low_complexity Low_complexity 1 66 0 3 1001 943 209 27 45 chr11 54639343 54639563 -67204293 + B3 SINE B2 1 216 0 3 1001 213 226 0 0 chr11 54640699 54640752 -67203104 + (TGG)n Simple_repeat Simple_repeat 1 53 0 3 1001 224 371 14 0 chr11 54640759 54640829 -67203027 - ID4_ SINE ID -2 81 11 3 1001 1076 50 42 14 chr11 54640986 54641129 -67202727 - B1_Mus1 SINE Alu 0 148 2 3 1001 423 270 104 0 chr11 54641203 54641318 -67202538 - RSINE1 SINE B4 -38 127 1 3 1001 736 251 107 5 chr11 54641346 54641542 -67202314 + ID_B1 SINE B4 2 217 -7 3 1001 870 164 0 0 chr11 54641678 54641812 -67202044 - B1_Mur3 SINE Alu -14 135 2 3 1001 1148 70 0 0 chr11 54641993 54642135 -67201721 + B1_Mm SINE Alu 1 142 -5 3 1001 487 318 32 60 chr11 54642160 54642408 -67201448 + RMER15-int LTR ERVL 1452 1692 -3307 3 1001 1208 61 0 13 chr11 54642456 54642606 -67201250 + B1_Mus1 SINE Alu 1 148 0 3 1001 227 54 27 0 chr11 54642608 54642645 -67201211 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 3 1001 696 318 88 23 chr11 54642672 54643059 -67200797 + RMER15-int LTR ERVL 1729 2140 -2859 3 1001 325 253 83 10 chr11 54643095 54643191 -67200665 + RMER15-int LTR ERVL 2297 2399 -2600 3 1001 576 248 36 78 chr11 54643213 54643379 -67200477 + U1 snRNA snRNA 2 160 -5 3 1001 23 0 0 0 chr11 54643379 54643402 -67200454 + AT_rich Low_complexity Low_complexity 1 23 0 3 1001 275 303 48 34 chr11 54643402 54643549 -67200307 + Lx8 LINE L1 6191 6339 -1134 3 1001 841 220 60 112 chr11 54643569 54643784 -67200072 + B4A SINE B4 15 218 -74 3 1001 248 274 0 99 chr11 54643782 54643800 -67200056 + B4 SINE B4 72 144 -148 3 1001 314 169 0 63 chr11 54643800 54643863 -67199993 + B1_Mus2 SINE Alu 1 59 -88 3 1001 740 113 0 87 chr11 54643901 54644250 -67199606 + (CAGAGA)n Simple_repeat Simple_repeat 1 318 0 3 1001 324 136 0 29 chr11 54644252 54644320 -67199536 + GA-rich Low_complexity Low_complexity 4 69 0 3 1001 313 198 65 56 chr11 54644329 54644436 -67199420 + B1_Mur2 SINE Alu 42 149 0 3 1001 3155 79 2 2 chr11 54644546 54644953 -67198903 + MTB_Mm LTR MaLR 1 407 0 3 1001 917 231 134 72 chr11 54644978 54645351 -67198505 + RMER15-int LTR ERVL 4588 4983 -16 3 1001 734 219 61 20 chr11 54645409 54645605 -67198251 + RMER15 LTR ERVL 280 483 -92 3 1001 351 0 0 0 chr11 54645644 54645683 -67198173 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1001 512 272 176 37 chr11 54646216 54646403 -67197453 - B3 SINE B2 -3 213 1 3 1001 1026 99 43 0 chr11 54646455 54646596 -67197260 + B1_Mus1 SINE Alu 2 148 0 3 1001 207 0 0 0 chr11 54646596 54646619 -67197237 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1001 592 236 68 12 chr11 54646744 54646904 -67196952 - ID_B1 SINE B4 -68 224 61 3 1001 728 234 70 15 chr11 54647869 54648069 -67195787 - ID_B1 SINE B4 -13 211 1 3 1001 911 175 7 0 chr11 54648574 54648717 -67195139 + B1_Mur4 SINE Alu 7 150 0 3 1001 377 311 50 81 chr11 54648577 54648738 -67195118 + B4 SINE B4 94 249 -43 3 1001 221 0 35 0 chr11 54648796 54648825 -67195031 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3 1001 287 269 25 13 chr11 54649003 54649082 -67194774 - ID4 SINE ID -2 81 2 3 1001 725 237 0 0 chr11 54649143 54649274 -67194582 + RSINE1 SINE B4 3 133 -32 4 1001 26 0 0 0 chr11 54649306 54649332 -67194524 + AT_rich Low_complexity Low_complexity 1 26 0 4 1001 588 214 41 33 chr11 54650159 54650280 -67193576 + ID_B1 SINE B4 95 216 -8 4 1001 516 205 208 24 chr11 54650532 54650657 -67193199 - B1_Mur2 SINE Alu 0 149 2 4 1001 544 279 96 6 chr11 54650711 54650877 -67192979 + B3A SINE B2 1 181 -17 4 1001 958 119 226 6 chr11 54650985 54651162 -67192694 - B3 SINE B2 0 216 1 4 1001 640 227 114 35 chr11 54651189 54651390 -67192466 - ID_B1 SINE B4 -6 218 2 4 1001 287 269 15 15 chr11 54651551 54651619 -67192237 - ID4_ SINE ID -14 69 2 4 1001 229 289 58 0 chr11 54651716 54651768 -67192088 + RSINE1 SINE B4 91 145 -20 4 1001 189 0 0 0 chr11 54651807 54651828 -67192028 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1001 515 299 94 67 chr11 54651829 54652150 -67191706 + ORR1E LTR MaLR 2 370 0 4 1001 390 219 0 12 chr11 54652189 54652278 -67191578 + B1F1 SINE Alu 26 143 -6 4 1001 359 292 82 14 chr11 54652280 54652426 -67191430 - L1MC LINE L1 -821 5512 5357 4 1001 1142 88 0 0 chr11 54652437 54652584 -67191272 + B1_Mus2 SINE Alu 1 147 0 4 1001 558 234 250 6 chr11 54652597 54652765 -67191091 + B3 SINE B2 3 211 -5 4 1001 983 147 0 13 chr11 54652783 54652935 -67190921 + B1_Mur4 SINE Alu 1 150 0 4 1001 228 237 50 17 chr11 54652959 54653019 -67190837 - RSINE1 SINE B4 -33 132 71 4 1001 251 143 105 18 chr11 54653041 54653098 -67190758 - L1MC LINE L1 -811 5368 5307 4 1001 785 221 39 25 chr11 54653099 54653303 -67190553 + B3 SINE B2 1 207 -9 4 1001 692 246 89 0 chr11 54653350 54653529 -67190327 - B3A SINE B2 -3 195 1 4 1001 388 158 79 0 chr11 54653741 54653817 -67190039 + PB1D9 SINE Alu 33 114 -6 4 1001 222 118 0 0 chr11 54653832 54653866 -67189990 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1001 841 174 184 38 chr11 54653973 54654158 -67189698 + B3 SINE B2 1 212 -4 4 1001 761 203 8 0 chr11 54655053 54655186 -67188670 - ID_B1 SINE B4 -7 217 84 4 1001 263 336 14 68 chr11 54655055 54655202 -67188654 + YREP_Mm Unknown Unknown 186 324 -1488 4 1001 201 233 0 0 chr11 54655257 54655300 -67188556 + C-rich Low_complexity Low_complexity 3 45 0 4 1001 246 221 49 49 chr11 54655300 54655320 -67188536 - ID4_ SINE ID -2 81 27 4 1001 318 151 0 19 chr11 54655320 54655374 -67188482 - tRNA-Ala-GCA tRNA tRNA -20 55 3 4 1001 272 234 77 15 chr11 54655427 54655492 -67188364 + MER20B DNA MER1_type 87 155 -628 4 1001 362 306 57 0 chr11 54655856 54655980 -67187876 + B1F2 SINE Alu 10 140 -9 4 1001 489 278 79 0 chr11 54656103 54656229 -67187627 + B1F1 SINE Alu 9 144 -5 4 1001 604 257 155 10 chr11 54656232 54656425 -67187431 + ID_B1 SINE B4 2 222 -2 4 1001 925 135 43 0 chr11 54656575 54656716 -67187140 + B1_Mus1 SINE Alu 1 147 -1 4 125 779 200 0 40 chr11 54656885 54657036 -67186820 + B1_Mur2 SINE Alu 5 149 0 4 1002 792 148 48 34 chr11 54657071 54657218 -67186638 + B1_Mur1 SINE Alu 1 149 0 4 1002 187 348 62 52 chr11 54657234 54657331 -67186525 - L2c LINE L2 -78 3309 3212 4 1002 1559 62 0 15 chr11 54657455 54657651 -67186205 + B2_Mm1a SINE B2 1 193 0 4 1002 1242 47 136 0 chr11 54657667 54657836 -67186020 + B2_Mm1t SINE B2 1 192 -1 4 1002 603 50 12 0 chr11 54657850 54657930 -67185926 + B1_Mus2 SINE Alu 66 146 -1 4 1002 421 296 110 23 chr11 54658663 54658836 -67185020 - MLT1J-int LTR MaLR -519 868 681 4 1002 532 237 30 15 chr11 54659105 54659238 -67184618 + RLTR14 LTR ERV1 14 148 -234 4 1002 365 247 97 108 chr11 54659862 54659934 -67183922 + MT2B LTR ERVL 81 150 -451 4 1002 771 194 14 21 chr11 54659934 54660076 -67183780 + B1_Mur3 SINE Alu 2 142 -7 4 1002 261 0 0 0 chr11 54660082 54660111 -67183745 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1002 265 327 204 7 chr11 54660389 54660663 -67183193 + L1M5 LINE L1 5035 5362 -784 4 1002 295 312 100 0 chr11 54660725 54660805 -67183051 + RSINE1 SINE B4 2 89 -76 4 1002 180 0 0 0 chr11 54660824 54660844 -67183012 + (TATG)n Simple_repeat Simple_repeat 3 22 0 4 1002 411 21 0 0 chr11 54660854 54660902 -67182954 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1002 745 178 13 52 chr11 54661106 54661247 -67182609 + B1_Mur4 SINE Alu 2 140 -10 4 1002 261 0 0 0 chr11 54661247 54661276 -67182580 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1002 745 178 13 52 chr11 54661276 54661288 -67182568 + B1_Mur4 SINE Alu 141 149 -1 4 1002 316 333 0 0 chr11 54661312 54661399 -67182457 + B4 SINE B4 1 87 -205 4 1002 487 178 82 27 chr11 54661408 54661518 -67182338 + PB1D9 SINE Alu 5 120 0 4 1002 3134 71 166 2 chr11 54661578 54662018 -67181838 + RLTR1B LTR ERV1 1 512 0 4 1002 224 127 18 0 chr11 54662170 54662225 -67181631 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 4 1002 848 156 22 0 chr11 54662447 54662582 -67181274 + B1_Mur2 SINE Alu 7 144 -5 4 1002 412 237 8 58 chr11 54662740 54662861 -67180995 - PB1D10 SINE Alu -2 115 1 4 1002 1105 89 135 6 chr11 54662933 54663103 -67180753 + B2_Mm1t SINE B2 2 193 0 4 1002 465 103 0 0 chr11 54663103 54663171 -67180685 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 4 1002 325 248 62 8 chr11 54663345 54663479 -67180377 - B3 SINE B2 -2 214 44 4 1002 185 261 27 55 chr11 54663612 54663685 -67180171 - L3 LINE CR1 -3170 1319 1249 4 1002 315 293 68 0 chr11 54664035 54664142 -67179714 + B1F1 SINE Alu 4 127 0 4 1002 270 143 0 0 chr11 54664231 54664280 -67179576 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1002 613 208 100 0 chr11 54664281 54664411 -67179445 - B1_Mur2 SINE Alu -6 143 1 4 1002 419 252 61 0 chr11 54664529 54664628 -67179228 - PB1D10 SINE Alu -8 109 5 4 1002 347 242 229 16 chr11 54664769 54664877 -67178979 + B1_Mur2 SINE Alu 2 136 -13 4 1002 1372 78 10 16 chr11 54664877 54665071 -67178785 + B2_Mm1t SINE B2 1 193 0 4 1002 347 242 229 16 chr11 54665071 54665084 -67178772 + B1_Mur2 SINE Alu 137 149 0 4 1002 528 226 0 0 chr11 54665342 54665444 -67178412 + B3 SINE B2 115 216 0 4 1002 1229 54 0 0 chr11 54665462 54665609 -67178247 + B1_Mus1 SINE Alu 2 148 0 4 1002 182 147 0 29 chr11 54665724 54665759 -67178097 + MIRc SINE MIR 124 157 -111 4 1002 754 256 36 5 chr11 54665777 54665969 -67177887 + B3A SINE B2 1 198 0 4 1002 368 182 91 0 chr11 54666503 54666580 -67177276 + ID_B1 SINE B4 130 213 -11 4 1002 434 274 48 0 chr11 54666580 54666704 -67177152 + BC1_Mm scRNA scRNA 3 132 -20 4 1002 424 297 62 102 chr11 54666825 54667069 -67176787 + B4A SINE B4 3 236 -56 4 1002 348 24 0 0 chr11 54667075 54667116 -67176740 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1002 258 32 0 0 chr11 54667116 54667146 -67176710 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1002 550 139 35 44 chr11 54667351 54667464 -67176392 - PB1D9 SINE Alu -8 112 1 4 1002 2815 26 2 206 chr11 54667519 54668004 -67175852 - RLTR10 LTR ERVK -4 386 1 4 1002 14531 27 50 31 chr11 54668006 54669913 -67173943 - RLTR10-int LTR ERVK -3 1984 41 4 1002 2815 26 2 206 chr11 54669929 54670414 -67173442 - RLTR10 LTR ERVK -4 386 1 4 1002 255 273 120 80 chr11 54670600 54670775 -67173081 + B3A SINE B2 1 182 -16 4 1002 235 357 12 43 chr11 54670874 54670895 -67172961 - YREP_Mm Unknown Unknown -1470 342 323 4 1002 189 0 0 0 chr11 54670895 54670916 -67172940 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1002 235 357 12 43 chr11 54670916 54671055 -67172801 - YREP_Mm Unknown Unknown -1490 322 187 4 1002 633 227 23 0 chr11 54670930 54671058 -67172798 + ID_B1 SINE B4 87 217 -7 4 1002 395 280 65 50 chr11 54670933 54671072 -67172784 + B1_Mur4 SINE Alu 10 150 0 4 1002 983 144 201 0 chr11 54671474 54671648 -67172208 + B3 SINE B2 4 212 -4 4 1002 189 0 0 0 chr11 54671651 54671672 -67172184 + (TAGA)n Simple_repeat Simple_repeat 4 24 0 4 1002 398 232 52 10 chr11 54671690 54671786 -67172070 + B4 SINE B4 2 101 -191 4 1002 520 231 86 33 chr11 54671987 54672139 -67171717 + MLT1-int LTR MaLR 5 164 -1207 4 1002 1496 29 29 0 chr11 54672140 54672315 -67171541 - B2_Mm2 SINE B2 -14 181 2 4 1002 615 251 11 86 chr11 54672367 54672436 -67171420 + ID_B1 SINE B4 52 224 0 4 1002 985 25 0 0 chr11 54672436 54672554 -67171302 + B1_Mm SINE Alu 30 147 0 4 1002 342 152 0 0 chr11 54672614 54672673 -67171183 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1002 253 310 14 14 chr11 54672681 54672753 -67171103 + AluG_3 SINE Alu 154 225 -86 4 1002 1076 176 18 12 chr11 54672888 54673090 -67170766 + B3 SINE B2 1 187 -8 4 1002 265 253 165 21 chr11 54673292 54673389 -67170467 + B1F SINE Alu 1 111 -38 4 1002 387 259 8 57 chr11 54674895 54675018 -67168838 + PB1D10 SINE Alu 1 117 0 4 1002 619 167 95 0 chr11 54675036 54675162 -67168694 - B1_Mur1 SINE Alu -8 141 4 4 1002 562 285 75 14 chr11 54675168 54675314 -67168542 - B4 SINE B4 -50 242 88 4 1002 842 179 126 5 chr11 54675370 54675561 -67168295 + B3 SINE B2 3 216 0 4 1002 351 0 0 0 chr11 54675588 54675627 -67168229 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1002 1121 52 0 0 chr11 54675630 54675764 -67168092 - B1_Mus1 SINE Alu -14 134 1 4 1002 763 241 59 20 chr11 54675975 54676178 -67167678 + B3 SINE B2 3 213 -3 4 1002 803 304 152 19 chr11 54676378 54676753 -67167103 + MLT1D LTR MaLR 1 425 -80 4 1002 594 273 58 6 chr11 54676788 54676961 -67166895 - MLT1D LTR MaLR -292 213 32 5 1002 331 347 68 15 chr11 54676978 54677183 -67166673 - L2 LINE L2 -427 2992 2777 5 1002 390 200 24 36 chr11 54677183 54677266 -67166590 + ID_B1 SINE B4 142 223 -1 5 1002 554 165 78 0 chr11 54677556 54677659 -67166197 + B1_Mus1 SINE Alu 6 116 -32 5 1002 351 60 0 0 chr11 54677659 54677709 -67166147 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1002 541 118 0 0 chr11 54678143 54678219 -67165637 + ID_B1 SINE B4 142 217 -7 5 1002 414 0 0 0 chr11 54678294 54678340 -67165516 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1002 586 211 28 0 chr11 54678346 54678455 -67165401 - B1_Mur4 SINE Alu -38 112 1 5 1002 425 176 137 171 chr11 54678468 54678673 -67165183 - B3A SINE B2 0 198 1 5 1002 264 235 182 10 chr11 54678959 54679058 -67164798 - L2 LINE L2 -1509 1910 1795 5 1002 355 331 53 15 chr11 54679102 54679234 -67164622 - MER5B DNA MER1_type -41 137 1 5 1002 560 220 99 40 chr11 54679336 54679519 -67164337 + B3A SINE B2 22 195 0 5 1002 756 272 34 10 chr11 54679583 54679787 -67164069 - ID_B1 SINE B4 -8 216 8 5 1002 375 265 51 43 chr11 54680592 54680730 -67163126 - ID_B1 SINE B4 0 224 86 5 1002 232 312 62 0 chr11 54681248 54681312 -67162544 + B1_Mus1 SINE Alu 23 90 -58 5 1002 599 295 91 9 chr11 54681649 54681868 -67161988 + B4A SINE B4 1 237 -55 5 1002 676 220 116 77 chr11 54682034 54682231 -67161625 + B3 SINE B2 1 206 -10 5 1002 751 121 120 8 chr11 54682231 54682364 -67161492 + B1_Mur4 SINE Alu 1 148 -2 5 1002 322 188 94 0 chr11 54682520 54682584 -67161272 - ORR1C1 LTR MaLR 0 384 315 5 1002 848 107 94 51 chr11 54682595 54682733 -67161123 - B1_Mus1 SINE Alu 0 148 5 5 1002 655 182 49 35 chr11 54682738 54682880 -67160976 - B1_Mur4 SINE Alu 0 150 7 5 1002 365 295 54 12 chr11 54682869 54683027 -67160829 - ORR1C1 LTR MaLR -34 344 191 5 1002 241 273 0 0 chr11 54682997 54683041 -67160815 - ORR1C1 LTR MaLR -322 62 19 5 1002 738 183 49 7 chr11 54683479 54683622 -67160234 - B1_Mur3 SINE Alu 0 149 1 5 1002 464 208 31 0 chr11 54684118 54684214 -67159642 + PB1D9 SINE Alu 14 112 -8 5 1002 522 185 101 9 chr11 54684405 54684514 -67159342 - B1F1 SINE Alu -5 144 26 5 1002 426 299 101 12 chr11 54684891 54685060 -67158796 + MLT1F LTR MaLR 1 184 -364 5 1002 236 297 185 25 chr11 54685082 54685244 -67158612 + MLT1F1 LTR MaLR 30 217 -148 5 1002 237 272 150 0 chr11 54685326 54685456 -67158400 + MLT1F1 LTR MaLR 191 343 -205 5 1002 664 175 16 8 chr11 54685441 54685562 -67158294 - B3A SINE B2 -69 129 8 5 1002 559 360 77 39 chr11 54685687 54686025 -67157831 + MLT1N2 LTR MaLR 34 384 -178 5 1002 372 229 25 139 chr11 54686362 54686484 -67157372 - PB1D9 SINE Alu -12 108 1 5 1002 476 269 60 0 chr11 54686512 54686646 -67157210 - ID_B1 SINE B4 -3 221 80 5 1002 584 230 54 31 chr11 54686647 54686777 -67157079 - ID_B1 SINE B4 -1 223 91 5 1002 267 31 0 0 chr11 54686898 54686930 -67156926 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 5 1002 726 138 33 49 chr11 54686930 54687052 -67156804 - B1_Mur4 SINE Alu -13 137 18 5 1002 202 194 0 0 chr11 54687272 54687308 -67156548 + GA-rich Low_complexity Low_complexity 1 36 0 5 1002 519 232 0 0 chr11 54687547 54687642 -67156214 + PB1D10 SINE Alu 17 111 -6 5 1002 1037 214 52 0 chr11 54687684 54687876 -67155980 + B3 SINE B2 6 207 -9 5 1002 990 117 7 20 chr11 54687905 54688053 -67155803 + B1_Mus1 SINE Alu 1 146 -2 5 1002 1392 116 51 62 chr11 54688053 54688310 -67155546 + L1_Mus4 LINE L1 6382 6635 -1 5 1002 1266 35 0 0 chr11 54688315 54688460 -67155396 + B1_Mm SINE Alu 1 145 -2 5 1002 466 250 163 0 chr11 54688737 54688909 -67154947 + L1MC1 LINE L1 6116 6315 -18 5 1002 1117 96 14 0 chr11 54688918 54689064 -67154792 + B1_Mus1 SINE Alu 1 148 0 5 1002 663 248 149 8 chr11 54689084 54689332 -67154524 + L1MB7 LINE L1 5313 5595 -583 5 1002 422 208 34 106 chr11 54689345 54689493 -67154363 + B1F2 SINE Alu 10 149 0 5 1002 278 288 65 114 chr11 54689774 54689958 -67153898 + MTEb LTR MaLR 205 379 0 5 1002 1336 72 67 0 chr11 54690066 54690246 -67153610 + B2_Mm1a SINE B2 2 193 0 5 1002 192 40 0 0 chr11 54690247 54690272 -67153584 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1002 228 111 0 0 chr11 54690277 54690313 -67153543 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 5 1002 734 258 69 0 chr11 54690315 54690474 -67153382 - B3A SINE B2 -27 171 2 5 1002 250 258 152 98 chr11 54690486 54690722 -67153134 + L1MB7 LINE L1 5742 5990 -194 5 1002 1244 41 14 0 chr11 54690849 54690995 -67152861 + B1_Mus1 SINE Alu 1 148 0 5 1002 830 262 40 0 chr11 54691053 54691255 -67152601 - B3 SINE B2 -6 210 1 5 1002 264 91 0 0 chr11 54691258 54691302 -67152554 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 1002 746 141 168 23 chr11 54691305 54691436 -67152420 - B1_Mur4 SINE Alu 0 150 1 5 1002 502 230 30 0 chr11 54691506 54691606 -67152250 - RSINE1 SINE B4 -61 104 2 5 1002 515 188 48 29 chr11 54691691 54691795 -67152061 + MT2A LTR ERVL 16 121 -412 5 1002 1075 67 0 0 chr11 54691793 54691906 -67151950 - B1_Mus1 SINE Alu 0 148 14 5 1002 764 204 204 22 chr11 54691906 54691928 -67151928 + MT2B LTR ERVL 37 59 -474 5 1002 1246 111 16 5 chr11 54691928 54692118 -67151738 + B2_Mm1t SINE B2 2 193 0 5 1002 997 244 120 29 chr11 54692118 54692489 -67151367 + MT2B LTR ERVL 60 599 -2 5 1002 447 220 121 0 chr11 54692499 54692590 -67151266 + B1F SINE Alu 41 142 -7 5 1002 1379 96 21 0 chr11 54692700 54692888 -67150968 + B2_Mm2 SINE B2 2 193 -2 5 1002 608 244 7 7 chr11 54693176 54693312 -67150544 + B1_Mur1 SINE Alu 3 138 -11 5 1002 576 273 11 25 chr11 54693763 54693905 -67149951 + B3A SINE B2 20 160 -35 5 1002 258 106 0 0 chr11 54693905 54693952 -67149904 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1002 373 279 74 80 chr11 54693952 54693984 -67149872 + B2_Mm2 SINE B2 161 192 -3 5 1002 244 235 191 0 chr11 54693993 54694061 -67149795 + PB1 SINE Alu 17 97 -30 5 1002 215 125 0 24 chr11 54694134 54694175 -67149681 + (GGAA)n Simple_repeat Simple_repeat 4 43 0 5 1002 660 247 53 7 chr11 54694227 54694378 -67149478 - ID_B1 SINE B4 0 224 67 5 1002 219 264 19 0 chr11 54694720 54694773 -67149083 - L2 LINE L2 -665 2754 2701 5 1002 1126 90 89 18 chr11 54695032 54695201 -67148655 + B2_Mm2 SINE B2 1 181 -14 5 1002 652 24 0 0 chr11 54695201 54695284 -67148572 - L1Md_T LINE L1 -2 6580 6498 5 1002 23 33 0 0 chr11 54695285 54695315 -67148541 + AT_rich Low_complexity Low_complexity 1 30 0 5 1002 604 130 276 9 chr11 54695326 54695442 -67148414 + B1_Mus2 SINE Alu 1 147 0 5 1002 428 353 0 0 chr11 54695478 54695597 -67148259 + ID_B1 SINE B4 95 213 -11 5 1002 744 160 79 8 chr11 54695600 54695726 -67148130 + B1_Mur1 SINE Alu 10 144 -5 5 1002 400 274 34 50 chr11 54695755 54695874 -67147982 + PB1D10 SINE Alu 1 117 0 5 1002 399 240 28 28 chr11 54695981 54696088 -67147768 + RSINE1 SINE B4 19 125 -40 5 1002 432 55 0 0 chr11 54696103 54696158 -67147698 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1002 396 253 11 0 chr11 54696636 54696731 -67147125 - PB1D10 SINE Alu -21 96 1 5 1002 741 115 9 8 chr11 54696788 54696919 -67146937 - B1_Mus2 SINE Alu -1 149 9 5 1002 292 186 127 14 chr11 54696921 54696992 -67146864 - ID2 SINE ID 0 83 5 5 1002 216 0 0 0 chr11 54697484 54697508 -67146348 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1002 23 54 0 0 chr11 54697592 54697629 -67146227 + AT_rich Low_complexity Low_complexity 1 37 0 5 1002 529 242 41 16 chr11 54697667 54697789 -67146067 - RSINE1 SINE B4 -38 127 3 5 1002 588 218 90 0 chr11 54697791 54697924 -67145932 - B4 SINE B4 -67 225 81 5 1002 782 226 62 41 chr11 54697926 54698120 -67145736 - B3A SINE B2 0 198 1 5 1002 237 83 0 0 chr11 54698134 54698170 -67145686 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1002 321 203 43 14 chr11 54698173 54698243 -67145613 - B4 SINE B4 -220 72 1 5 1002 1318 252 75 29 chr11 54699667 54700043 -67143813 - MTD LTR MaLR -26 393 1 5 1002 541 263 8 0 chr11 54700117 54700235 -67143621 + B1_Mur1 SINE Alu 30 148 -1 5 1002 334 211 0 17 chr11 54700269 54700327 -67143529 + B3 SINE B2 2 58 -158 5 1002 587 246 98 5 chr11 54700338 54700522 -67143334 + RMER5 LTR ERV1 334 534 0 5 1002 899 238 62 14 chr11 54700541 54700750 -67143106 - ID_B1 SINE B4 -5 219 1 5 1002 794 271 25 146 chr11 54700826 54700873 -67142983 - ORR1E LTR MaLR 0 379 313 5 1002 1657 151 109 39 chr11 54700873 54701061 -67142795 - ORR1C2 LTR MaLR 0 384 191 5 1002 477 0 0 0 chr11 54701061 54701114 -67142742 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1002 1657 151 109 39 chr11 54701114 54701131 -67142725 - ORR1C2 LTR MaLR -194 190 167 5 1002 1440 63 15 35 chr11 54701131 54701328 -67142528 - B2_Mm2 SINE B2 -2 193 1 5 1002 1657 151 109 39 chr11 54701328 54701480 -67142376 - ORR1C2 LTR MaLR -218 166 2 5 1002 794 294 67 73 chr11 54701480 54701794 -67142062 - ORR1E LTR MaLR -47 312 1 5 1002 420 274 77 86 chr11 54702238 54702368 -67141488 - B1F1 SINE Alu 0 127 1 5 1002 1145 191 34 10 chr11 54702542 54702748 -67141108 + B3 SINE B2 1 211 -5 5 1002 459 0 0 0 chr11 54702805 54702856 -67141000 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 5 1002 255 323 10 29 chr11 54702895 54702997 -67140859 + PB1D10 SINE Alu 1 100 -17 5 1002 264 263 0 0 chr11 54703341 54703398 -67140458 + ID_B1 SINE B4 117 173 -51 5 1002 295 270 87 33 chr11 54703450 54703542 -67140314 + PB1D10 SINE Alu 13 109 -8 5 1002 673 208 0 75 chr11 54703563 54703724 -67140132 + B1_Mur2 SINE Alu 1 149 0 5 1002 384 297 41 48 chr11 54703754 54703767 -67140089 + B1_Mus1 SINE Alu 1 139 -4 5 1002 658 222 24 8 chr11 54703767 54703894 -67139962 + ID_B1 SINE B4 87 215 -9 6 1002 519 148 0 0 chr11 54703913 54704001 -67139855 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 1002 405 123 0 0 chr11 54704101 54704166 -67139690 + (GGA)n Simple_repeat Simple_repeat 3 67 0 6 1002 272 347 42 0 chr11 54704202 54704297 -67139559 + L2b LINE L2 3269 3367 -8 6 1002 188 266 0 22 chr11 54704355 54704430 -67139426 + MIR SINE MIR 77 148 -120 6 1002 286 276 50 88 chr11 54704447 54704606 -67139250 - YREP_Mm Unknown Unknown -1474 338 186 6 1002 618 235 15 0 chr11 54704483 54704615 -67139241 + ID_B1 SINE B4 91 224 0 6 1002 302 219 81 14 chr11 54704831 54704905 -67138951 + ID4_ SINE ID 2 80 -3 6 1002 429 20 0 0 chr11 54704905 54704955 -67138901 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 6 1002 566 287 87 5 chr11 54704996 54705192 -67138664 + ID_B1 SINE B4 2 213 -11 6 1002 227 230 91 39 chr11 54705311 54705409 -67138447 + MIRb SINE MIR 72 178 -90 6 1002 264 218 61 46 chr11 54705433 54705571 -67138285 + MIRb SINE MIR 43 177 -91 6 1002 679 251 61 28 chr11 54705988 54706168 -67137688 - B3A SINE B2 -3 195 10 6 1002 24 0 0 0 chr11 54706172 54706196 -67137660 + AT_rich Low_complexity Low_complexity 1 24 0 6 1002 290 184 36 84 chr11 54706253 54706336 -67137520 - B4A SINE B4 0 292 214 6 1002 758 234 20 36 chr11 54706339 54706534 -67137322 - B3 SINE B2 0 216 25 6 1002 195 42 0 0 chr11 54706683 54706707 -67137149 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 6 1002 1410 69 0 2 chr11 54706764 54707215 -67136641 + (GGAA)n Simple_repeat Simple_repeat 1 450 0 6 1002 640 285 0 19 chr11 54707326 54707487 -67136369 - RSINE1 SINE B4 -6 159 2 6 1002 732 302 80 32 chr11 54707556 54707867 -67135989 + MLT1A0 LTR MaLR 40 365 0 6 1002 1390 284 128 19 chr11 54707922 54708407 -67135449 + MER68 LTR ERVL 12 549 -14 6 1002 507 314 44 0 chr11 54708527 54708664 -67135192 - B1F1 SINE Alu -5 144 2 6 1002 285 261 28 17 chr11 54708676 54708767 -67135089 - ID2 SINE ID -60 92 1 6 1002 358 333 98 9 chr11 54708784 54708896 -67134960 - PB1 SINE Alu -4 123 2 6 1002 38 0 0 0 chr11 54708899 54708937 -67134919 + AT_rich Low_complexity Low_complexity 1 38 0 6 1002 538 238 26 39 chr11 54709028 54709100 -67134756 - RSINE1 SINE B4 -11 154 84 6 1002 1047 116 0 13 chr11 54709100 54709249 -67134607 - B1_Mur4 SINE Alu 0 150 4 6 1002 538 238 26 39 chr11 54709249 54709329 -67134527 - RSINE1 SINE B4 -82 83 4 6 1002 1041 215 55 0 chr11 54709355 54709555 -67134301 - B3 SINE B2 -2 214 4 6 1002 389 324 19 77 chr11 54709621 54709753 -67134103 - PB1D7 SINE Alu -23 125 2 6 1002 682 144 10 0 chr11 54709807 54709911 -67133945 + B1_Mus2 SINE Alu 36 140 -7 6 1002 324 0 0 0 chr11 54709915 54709951 -67133905 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1002 287 354 15 23 chr11 54709961 54710094 -67133762 + YREP_Mm Unknown Unknown 166 297 -1515 6 1002 769 281 35 10 chr11 54709975 54710176 -67133680 - ID_B1 SINE B4 -5 219 14 6 1002 237 65 0 0 chr11 54710189 54710220 -67133636 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1002 409 263 25 42 chr11 54710227 54710346 -67133510 - MER33 DNA MER1_type -207 117 1 6 1002 446 278 58 19 chr11 54710350 54710504 -67133352 + MIR SINE MIR 13 172 -90 6 1002 234 341 118 0 chr11 54710531 54710616 -67133240 + ID_B1 SINE B4 1 95 -129 6 1002 220 262 9 208 chr11 54710587 54710693 -67133163 + B1F SINE Alu 29 113 -36 6 1002 486 292 119 28 chr11 54710871 54711047 -67132809 - B3A SINE B2 0 198 7 6 1002 535 194 129 15 chr11 54711596 54711730 -67132126 - B1_Mur4 SINE Alu 0 150 2 6 1002 986 217 39 0 chr11 54711751 54711954 -67131902 - B3 SINE B2 -5 211 1 6 1002 237 65 0 0 chr11 54712744 54712775 -67131081 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1002 918 144 7 14 chr11 54712916 54713064 -67130792 + B1_Mur2 SINE Alu 2 148 -1 6 1002 195 69 0 0 chr11 54713433 54713462 -67130394 + (TCTCTG)n Simple_repeat Simple_repeat 5 33 0 6 1002 409 228 117 99 chr11 54713465 54713485 -67130371 - ID_B1 SINE B4 -50 242 161 6 1002 569 218 55 31 chr11 54713485 54713613 -67130243 - B1F SINE Alu -13 136 6 6 1002 409 228 117 99 chr11 54713613 54713631 -67130225 - ID_B1 SINE B4 -50 160 76 6 1002 212 289 86 79 chr11 54713615 54713634 -67130222 - B4 SINE B4 -147 145 127 6 1002 582 15 0 0 chr11 54713634 54713701 -67130155 + (TCC)n Simple_repeat Simple_repeat 2 68 0 6 1002 318 266 40 29 chr11 54713701 54713820 -67130036 - ID_B1 SINE B4 -166 126 6 6 1002 357 82 0 0 chr11 54713825 54713874 -67129982 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 6 1002 705 59 19 0 chr11 54713875 54713978 -67129878 - B1_Mm SINE Alu 0 120 7 6 1002 396 169 0 117 chr11 54713901 54713995 -67129861 - MT2B LTR ERVL -361 240 158 6 1002 314 267 39 1 chr11 54713979 54714069 -67129787 - PB1D10 SINE Alu -26 91 1 6 1002 304 274 106 19 chr11 54714177 54714281 -67129575 - B1F SINE Alu 0 149 37 6 1002 442 270 103 46 chr11 54714337 54714364 -67129492 - MTD LTR MaLR -174 222 192 6 1002 867 155 7 47 chr11 54714364 54714513 -67129343 - B1_Mur3 SINE Alu -2 147 5 6 1002 754 184 196 2 chr11 54714513 54714679 -67129177 - MTD LTR MaLR -210 209 18 6 1002 207 0 0 0 chr11 54714679 54714702 -67129154 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 6 1002 269 200 0 202 chr11 54715100 54715194 -67128662 - B4 SINE B4 -217 75 1 6 1002 408 237 77 43 chr11 54715578 54715772 -67128084 - MIR3 SINE MIR -2 274 78 6 1002 380 189 0 63 chr11 54715903 54715982 -67127874 - ID4 SINE ID -5 78 5 6 1002 424 262 9 55 chr11 54715988 54716097 -67127759 - PB1D7 SINE Alu -16 104 1 6 1002 324 0 0 0 chr11 54717378 54717414 -67126442 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1002 237 289 109 51 chr11 54717985 54718160 -67125696 - MIR3 SINE MIR -2 206 22 6 1002 513 285 72 72 chr11 54718651 54718837 -67125019 + B4A SINE B4 4 189 -103 6 1002 528 270 48 0 chr11 54718837 54718963 -67124893 + RSINE1 SINE B4 1 132 -33 6 1002 211 315 27 41 chr11 54719127 54719223 -67124633 - MIRc SINE MIR -138 130 30 6 1002 334 257 27 18 chr11 54719375 54719486 -67124370 - PB1D10 SINE Alu -2 115 4 6 1002 192 286 128 13 chr11 54720466 54720544 -67123312 + MIR SINE MIR 31 117 -91 6 1002 789 168 73 0 chr11 54721247 54721384 -67122472 - B1_Mus1 SINE Alu -1 147 1 6 1002 201 207 151 47 chr11 54721914 54722000 -67121856 + MIR SINE MIR 58 152 -56 6 1002 277 301 111 25 chr11 54725178 54725376 -67118480 - MIR SINE MIR -16 246 32 6 1002 207 414 32 16 chr11 54725601 54725790 -67118066 + L2 LINE L2 2790 2981 -438 6 1002 990 88 0 0 chr11 54725852 54725989 -67117867 - B1_Mus2 SINE Alu -2 145 9 6 1002 420 200 0 125 chr11 54725895 54726015 -67117841 - MT2B LTR ERVL -344 257 153 6 1002 381 324 111 19 chr11 54726541 54726749 -67117107 + MTE-int LTR MaLR 277 503 -1077 6 1002 895 125 6 89 chr11 54726813 54726971 -67116885 + B1_Mus2 SINE Alu 2 146 -1 6 1002 276 149 0 0 chr11 54726979 54727026 -67116830 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1002 261 250 87 61 chr11 54727037 54727152 -67116704 + B3A SINE B2 81 198 0 6 1002 252 314 22 74 chr11 54727227 54727248 -67116608 + ID_B1 SINE B4 84 137 -87 6 1002 361 264 22 33 chr11 54727248 54727338 -67116518 + B1F2 SINE Alu 20 108 -41 6 1002 252 314 22 74 chr11 54727338 54727362 -67116494 + ID_B1 SINE B4 138 207 -17 6 1002 925 333 57 113 chr11 54727433 54728253 -67115603 + MTE-int LTR MaLR 757 1530 -50 6 1002 806 169 28 0 chr11 54729124 54729266 -67114590 + B1_Mus2 SINE Alu 1 146 -1 6 1002 549 164 221 0 chr11 54729458 54729580 -67114276 - B1F SINE Alu 0 149 1 6 1002 1195 75 0 0 chr11 54729635 54729782 -67114074 + B1_Mus2 SINE Alu 1 147 0 6 1002 183 42 0 0 chr11 54729792 54729816 -67114040 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1002 252 286 28 19 chr11 54729958 54730065 -67113791 + GA-rich Low_complexity Low_complexity 2 109 0 6 1002 1364 99 16 0 chr11 54731632 54731814 -67112042 + B2_Mm2 SINE B2 3 187 -8 6 1002 843 102 101 2 chr11 54731849 54732019 -67111837 + B2_Mm2 SINE B2 2 215 -1 6 1002 200 370 0 42 chr11 54732402 54732498 -67111358 - MIRb SINE MIR -74 194 103 6 1002 1368 203 31 28 chr11 54732515 54732835 -67111021 + MTD LTR MaLR 15 335 -84 6 1002 664 130 218 8 chr11 54733160 54733284 -67110572 + B1_Mur4 SINE Alu 1 150 0 6 1002 1228 119 23 0 chr11 54733310 54733486 -67110370 + B2_Mm2 SINE B2 2 181 -14 6 1002 358 96 316 9 chr11 54733518 54733632 -67110224 + B2_Mm2 SINE B2 47 195 0 6 1002 184 229 0 0 chr11 54733975 54734010 -67109846 - L2a LINE L2 -267 3159 3125 6 1002 207 69 0 0 chr11 54735084 54735113 -67108743 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 6 1002 346 187 319 0 chr11 54735113 54735204 -67108652 - RSINE1 SINE B4 -43 122 3 6 1002 427 342 6 37 chr11 54735364 54735528 -67108328 - ID_B1 SINE B4 0 224 66 6 1002 595 146 18 26 chr11 54735533 54735646 -67108210 + B1_Mur1 SINE Alu 38 149 0 6 1002 195 0 27 54 chr11 54735691 54735728 -67108128 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1002 1059 213 24 0 chr11 54735769 54735980 -67107876 + B3 SINE B2 1 216 0 6 1002 454 198 0 90 chr11 54737001 54737027 -67106829 - PB1D10 SINE Alu 0 117 99 6 1002 653 222 194 5 chr11 54737027 54737213 -67106643 - ID_B1 SINE B4 0 224 4 6 1002 454 198 0 90 chr11 54737213 54737308 -67106548 - PB1D10 SINE Alu -19 98 7 6 1002 703 219 0 8 chr11 54737370 54737499 -67106357 + B3 SINE B2 1 128 -88 7 1002 269 284 24 12 chr11 54738307 54738389 -67105467 + ID4_ SINE ID 1 83 0 7 1002 180 97 0 0 chr11 54738394 54738425 -67105431 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1002 1117 72 0 7 chr11 54738426 54738565 -67105291 + B1_Mus1 SINE Alu 1 138 -10 7 1002 203 61 0 29 chr11 54738566 54738587 -67105269 + (CCA)n Simple_repeat Simple_repeat 1 21 0 7 1002 341 70 18 0 chr11 54738587 54738644 -67105212 + (CAAAC)n Simple_repeat Simple_repeat 5 62 0 7 1002 203 61 0 29 chr11 54738644 54738656 -67105200 + (CCA)n Simple_repeat Simple_repeat 1 12 0 7 1002 779 166 27 33 chr11 54738762 54738912 -67104944 + B1_Mur2 SINE Alu 1 149 0 7 1002 198 0 0 0 chr11 54739268 54739290 -67104566 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1002 225 265 48 58 chr11 54739305 54739409 -67104447 + B1F SINE Alu 18 120 -29 7 1002 748 227 66 28 chr11 54739819 54740000 -67103856 - B3A SINE B2 -10 188 1 7 1002 523 207 147 0 chr11 54740626 54740742 -67103114 + RSINE1 SINE B4 2 134 -31 7 1002 638 285 128 33 chr11 54740847 54741268 -67102588 + L1MC4a LINE L1 7422 7882 0 7 1002 446 178 116 11 chr11 54741578 54741684 -67102172 + B1_Mur1 SINE Alu 12 127 -22 7 1002 266 272 25 0 chr11 54743020 54743101 -67100755 + MER113 DNA MER1_type 168 250 -271 7 1002 346 282 118 37 chr11 54743241 54743377 -67100479 + B1F SINE Alu 1 147 -2 7 1002 973 47 0 0 chr11 54743565 54743692 -67100164 - B1_Mus2 SINE Alu -15 132 6 7 1002 524 267 38 0 chr11 54744871 54745002 -67098854 - B1F SINE Alu 0 149 14 7 1002 266 266 0 15 chr11 54744948 54745013 -67098843 - B4A SINE B4 -140 152 89 7 1002 782 177 212 22 chr11 54745320 54745499 -67098357 - B3 SINE B2 0 216 4 7 1002 701 191 81 0 chr11 54745526 54745662 -67098194 - B1_Mus1 SINE Alu -1 147 1 7 1002 260 267 0 32 chr11 54745665 54745727 -67098129 - PB1D10 SINE Alu -3 114 55 7 1002 1521 68 5 0 chr11 54746743 54746934 -67096922 - B2_Mm1a SINE B2 -1 192 1 7 1002 487 231 37 0 chr11 54746959 54747067 -67096789 + PB1D7 SINE Alu 1 112 -8 7 1002 509 232 26 9 chr11 54747129 54747242 -67096614 + B1_Mur1 SINE Alu 34 148 -1 7 1002 202 279 23 92 chr11 54748654 54748741 -67095115 - MIRc SINE MIR -164 104 24 7 1002 192 152 0 0 chr11 54749300 54749333 -67094523 + A-rich Low_complexity Low_complexity 2 34 0 7 1002 288 0 0 0 chr11 54750285 54750317 -67093539 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1002 513 0 0 0 chr11 54750317 54750373 -67093483 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1002 660 263 111 33 chr11 54750715 54750986 -67092870 + B4A SINE B4 1 292 0 7 1002 204 158 0 0 chr11 54751497 54751535 -67092321 + (TGG)n Simple_repeat Simple_repeat 3 40 0 7 1002 534 279 91 21 chr11 54751897 54752084 -67091772 - ID_B1 SINE B4 -19 205 6 7 1002 199 308 83 18 chr11 54752087 54752196 -67091660 - MIRm SINE MIR -97 179 64 7 1002 891 43 0 0 chr11 54752210 54752326 -67091530 + B1_Mus2 SINE Alu 32 147 0 7 1002 237 42 20 41 chr11 54752326 54752375 -67091481 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 7 1002 184 200 24 24 chr11 54752730 54752771 -67091085 + MIR SINE MIR 109 149 -59 7 1002 289 266 115 80 chr11 54754428 54754628 -67089228 - L3 LINE CR1 -432 4057 3851 7 1002 1251 146 13 80 chr11 54755623 54755698 -67088158 - URR1A DNA MER1_type 0 226 158 7 1002 183 42 0 0 chr11 54755698 54755722 -67088134 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1002 1230 55 0 0 chr11 54755724 54755870 -67087986 - B1_Mus2 SINE Alu 0 147 2 7 1002 1251 146 13 80 chr11 54755870 54756030 -67087826 - URR1A DNA MER1_type -69 157 4 7 1002 1007 225 14 56 chr11 54757290 54757588 -67086268 - RLTR11B LTR ERVK -168 273 5 7 1002 347 260 48 9 chr11 54758744 54758849 -67085007 + MIRb SINE MIR 67 175 -93 7 1002 1297 91 17 0 chr11 54758850 54759026 -67084830 + B2_Mm1t SINE B2 1 179 -14 7 1002 341 88 313 17 chr11 54759088 54759203 -67084653 + B2_Mm2 SINE B2 47 195 0 7 1002 419 258 16 24 chr11 54759463 54759569 -67084287 - B4 SINE B4 -43 249 146 7 1002 210 71 0 0 chr11 54759569 54759597 -67084259 + (ATG)n Simple_repeat Simple_repeat 1 28 0 7 1002 419 258 16 24 chr11 54759597 54759617 -67084239 - B4 SINE B4 -147 145 125 7 1002 1171 100 0 6 chr11 54759641 54759812 -67084044 - B2_Mm2 SINE B2 -24 171 2 7 1002 276 241 145 0 chr11 54759951 54760034 -67083822 - PB1D10 SINE Alu 0 117 23 7 1002 216 349 36 0 chr11 54760038 54760121 -67083735 - ID_B1 SINE B4 -54 170 85 7 1002 231 260 0 0 chr11 54760123 54760173 -67083683 + MIR3 SINE MIR 151 200 -8 7 1002 210 244 0 0 chr11 54760675 54760716 -67083140 - MIRm SINE MIR -149 127 87 7 1002 276 277 77 43 chr11 54762652 54762703 -67081153 - ID_B1 SINE B4 0 224 169 7 1002 3041 43 56 8 chr11 54762703 54763081 -67080775 + MTA_Mm LTR MaLR 1 396 0 7 1002 276 277 77 43 chr11 54763081 54763146 -67080710 - ID_B1 SINE B4 -56 168 104 7 1002 762 43 0 0 chr11 54763552 54763646 -67080210 + (TCCC)n Simple_repeat Simple_repeat 4 97 0 7 1002 892 86 16 0 chr11 54763659 54763787 -67080069 - B1_Mus1 SINE Alu -1 147 18 7 1002 492 236 46 20 chr11 54763787 54763810 -67080046 - ID_B1 SINE B4 -1 223 69 7 1002 359 261 0 22 chr11 54763882 54763972 -67079884 + B4 SINE B4 5 92 -200 7 1002 407 289 65 16 chr11 54763985 54764108 -67079748 + RSINE1 SINE B4 2 130 -35 7 1002 503 281 27 14 chr11 54764191 54764339 -67079517 + B4 SINE B4 84 233 -59 7 1002 704 270 102 5 chr11 54764924 54765121 -67078735 - ID_B1 SINE B4 -7 217 2 7 1002 488 257 0 9 chr11 54765835 54765945 -67077911 - B1_Mur3 SINE Alu -40 109 1 7 1002 288 340 68 20 chr11 54765982 54766242 -67077614 - L2a LINE L2 -201 3225 2956 7 1002 797 223 160 5 chr11 54766609 54766803 -67077053 + ID_B1 SINE B4 1 224 0 7 1002 454 304 67 7 chr11 54766815 54766964 -67076892 + RSINE1 SINE B4 3 160 -5 7 1002 266 202 196 31 chr11 54767058 54767155 -67076701 + PB1D10 SINE Alu 4 116 -1 7 1002 201 171 0 0 chr11 54767155 54767190 -67076666 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 7 1002 1151 75 0 27 chr11 54767230 54767380 -67076476 + B1_Mus1 SINE Alu 2 147 -1 7 1002 266 164 18 0 chr11 54767382 54767437 -67076419 + URR1B DNA MER1_type 139 194 -31 7 1002 280 287 33 44 chr11 54768071 54768162 -67075694 + MIRb SINE MIR 23 112 -156 7 1002 772 268 64 136 chr11 54768195 54768674 -67075182 - RLTR11B LTR ERVK -24 504 1 7 1002 300 202 76 0 chr11 54768727 54768806 -67075050 + RSINE1 SINE B4 4 88 -77 7 1002 276 115 0 0 chr11 54768863 54768881 -67074975 + (A)n Simple_repeat Simple_repeat 1 18 0 7 1002 1257 27 7 0 chr11 54768881 54769027 -67074829 + B1_Mm SINE Alu 1 147 0 7 1002 276 115 0 0 chr11 54769027 54769060 -67074796 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1002 508 215 90 8 chr11 54769109 54769231 -67074625 + B1_Mur2 SINE Alu 13 144 -5 7 1002 270 56 0 0 chr11 54769896 54769932 -67073924 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1002 1179 75 0 0 chr11 54770030 54770177 -67073679 + B1_Mus2 SINE Alu 1 147 0 7 1002 235 171 0 0 chr11 54770926 54770967 -67072889 + PB1D9 SINE Alu 21 61 -59 7 1002 498 227 0 26 chr11 54770993 54771106 -67072750 + RSINE1 SINE B4 2 111 -54 7 1002 277 250 56 0 chr11 54771135 54771207 -67072649 - PB1D10 SINE Alu -18 99 24 7 1002 243 0 0 0 chr11 54771208 54771235 -67072621 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 1002 626 58 0 22 chr11 54771247 54771336 -67072520 - B1_Mus2 SINE Alu 0 147 61 7 1002 205 330 114 0 chr11 54771431 54771519 -67072337 - MIRm SINE MIR -146 130 33 7 1002 543 31 0 0 chr11 54771548 54771613 -67072243 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1002 637 231 7 26 chr11 54771618 54771769 -67072087 - ID_B1 SINE B4 -37 187 40 7 1002 519 302 127 37 chr11 54772372 54772640 -67071216 + B4A SINE B4 1 292 0 7 1002 183 80 0 0 chr11 54772669 54772694 -67071162 + (GGGAGA)n Simple_repeat Simple_repeat 6 30 0 7 1002 279 0 0 0 chr11 54773127 54773158 -67070698 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1002 1024 203 70 99 chr11 54773196 54773480 -67070376 - B4 SINE B4 -15 277 2 7 1002 606 240 93 24 chr11 54773483 54773688 -67070168 - ID_B1 SINE B4 -1 223 5 7 1002 800 273 5 0 chr11 54774001 54774195 -67069661 + ID_B1 SINE B4 30 224 0 7 1002 305 286 36 0 chr11 54774235 54774319 -67069537 + PB1D10 SINE Alu 27 113 -4 7 1002 206 0 69 0 chr11 54774488 54774517 -67069339 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7 1002 646 264 18 25 chr11 54774531 54774694 -67069162 - RSINE1 SINE B4 -2 163 2 7 1002 1261 217 20 105 chr11 54777029 54777421 -67066435 + MTEa LTR MaLR 1 359 -20 7 1002 291 306 0 0 chr11 54777686 54777770 -67066086 - MER3 DNA MER1_type 0 209 126 7 1002 982 268 111 0 chr11 54777770 54778031 -67065825 + B4 SINE B4 1 290 -2 7 1002 507 45 0 0 chr11 54778043 54778109 -67065747 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1002 231 173 77 0 chr11 54778201 54778253 -67065603 + MER3 DNA MER1_type 69 124 -85 7 1002 219 213 214 0 chr11 54778257 54778349 -67065507 + MIR SINE MIR 8 128 -80 7 1002 341 334 95 12 chr11 54778433 54778639 -67065217 - L2c LINE L2 -118 3269 3049 7 1002 201 295 67 11 chr11 54778908 54778997 -67064859 - MIRc SINE MIR -172 96 3 8 1002 501 198 59 0 chr11 54779027 54779128 -67064728 + PB1D10 SINE Alu 5 111 -6 8 1002 1416 84 21 0 chr11 54779136 54779327 -67064529 + B2_Mm2 SINE B2 1 195 0 8 1002 473 283 53 92 chr11 54779331 54779537 -67064319 + B3A SINE B2 1 198 0 8 1002 1636 42 0 0 chr11 54779565 54779756 -67064100 + B2_Mm1a SINE B2 1 191 -2 8 1002 232 305 90 63 chr11 54780173 54780362 -67063494 - MLT2D LTR ERVL -117 297 104 8 1002 631 234 23 0 chr11 54780417 54780545 -67063311 - ID_B1 SINE B4 -15 209 79 8 1002 1203 88 0 0 chr11 54780557 54780704 -67063152 - B1_Mus2 SINE Alu 0 147 1 8 1002 1197 139 0 25 chr11 54781234 54781433 -67062423 - B2_Mm2 SINE B2 0 195 2 8 1002 630 302 90 17 chr11 54781575 54781866 -67061990 + MER2 DNA MER2_type 14 335 -1 8 1002 571 235 45 34 chr11 54781928 54782104 -67061752 + B3A SINE B2 5 182 -16 8 1002 634 211 0 0 chr11 54782133 54782242 -67061614 + PB1D9 SINE Alu 3 111 -9 8 1002 360 59 0 0 chr11 54782242 54782293 -67061563 + (CATA)n Simple_repeat Simple_repeat 4 54 0 8 1002 525 262 107 120 chr11 54782324 54782617 -67061239 + ORR1E LTR MaLR 8 278 -89 8 1002 916 150 7 13 chr11 54782617 54782766 -67061090 + B1_Mus1 SINE Alu 1 148 0 8 1002 225 0 0 0 chr11 54782774 54782799 -67061057 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1002 736 300 112 8 chr11 54782874 54783115 -67060741 + MTE-int LTR MaLR 3 268 -1312 8 1002 1353 148 12 34 chr11 54783115 54783529 -67060327 - RMER6A LTR ERVK 0 756 54 8 1002 754 191 2 2 chr11 54783524 54783662 -67060194 - B1_Mur2 SINE Alu -2 147 10 8 1002 451 257 58 51 chr11 54783662 54783680 -67060176 - ID_B1 SINE B4 -2 222 66 8 1002 578 265 33 153 chr11 54783895 54784136 -67059720 - ID_B1 SINE B4 -11 213 2 8 1002 1367 79 17 6 chr11 54784501 54784680 -67059176 + B2_Mm2 SINE B2 1 181 -14 8 1002 423 0 0 0 chr11 54784680 54784727 -67059129 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1002 1152 95 0 0 chr11 54784738 54784886 -67058970 + B1_Mus1 SINE Alu 1 148 0 8 1002 446 61 0 15 chr11 54785057 54785124 -67058732 + (TC)n Simple_repeat Simple_repeat 2 67 0 8 1002 658 286 14 68 chr11 54785124 54785345 -67058511 - ID_B1 SINE B4 -14 210 2 8 1002 315 0 0 0 chr11 54786132 54786167 -67057689 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1002 186 71 0 0 chr11 54786289 54786317 -67057539 + (G)n Simple_repeat Simple_repeat 1 28 0 8 1002 492 18 0 0 chr11 54786979 54787036 -67056820 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1002 808 277 33 88 chr11 54787833 54787998 -67055858 - B4A SINE B4 -33 259 95 8 1002 236 100 25 0 chr11 54787998 54788038 -67055818 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 8 125 1184 75 0 0 chr11 54788046 54788193 -67055663 - B1_Mus2 SINE Alu 0 147 1 8 1003 808 277 33 88 chr11 54788193 54788291 -67055565 - B4A SINE B4 -198 94 2 8 1003 233 314 0 28 chr11 54788323 54788395 -67055461 - ID4_ SINE ID -13 70 1 8 1003 859 157 64 110 chr11 54788451 54788537 -67055319 - URR1B DNA MER1_type 0 225 156 8 1003 1397 75 32 0 chr11 54788537 54788724 -67055132 - B2_Mm2 SINE B2 -2 193 1 8 1003 859 157 64 110 chr11 54788724 54788873 -67054983 - URR1B DNA MER1_type -70 155 1 8 1003 855 206 80 42 chr11 54789569 54789782 -67054074 + ID_B1 SINE B4 2 222 -2 8 1003 695 222 148 0 chr11 54789796 54789958 -67053898 + B3 SINE B2 30 215 -1 8 1003 284 48 24 0 chr11 54790416 54790458 -67053398 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 8 1003 479 207 105 26 chr11 54790525 54790639 -67053217 + ID_B1 SINE B4 91 213 -11 8 1003 939 127 0 0 chr11 54790639 54790789 -67053067 + (GGAA)n Simple_repeat Simple_repeat 2 151 0 8 1003 274 190 79 5 chr11 54791115 54791178 -67052678 - MIR3 SINE MIR -45 163 99 8 1003 278 211 173 0 chr11 54791415 54791497 -67052359 + B1F2 SINE Alu 5 99 -50 8 1003 699 246 109 81 chr11 54791820 54792026 -67051830 - B4A SINE B4 0 292 79 8 1003 720 199 13 46 chr11 54792026 54792179 -67051677 - B1_Mur1 SINE Alu 0 149 2 8 1003 699 246 109 81 chr11 54792179 54792255 -67051601 - B4A SINE B4 -214 78 2 8 1003 261 320 70 0 chr11 54792314 54792414 -67051442 - MIR3 SINE MIR -14 194 88 8 1003 324 227 13 39 chr11 54793555 54793633 -67050223 - ID_B1 SINE B4 -19 205 130 8 1003 901 248 64 30 chr11 54793736 54793972 -67049884 + ID_B1 SINE B4 1 218 -74 8 1003 711 141 156 0 chr11 54794019 54794147 -67049709 - B1_Mus1 SINE Alu 0 148 1 8 1003 710 206 138 36 chr11 54794380 54794576 -67049280 + B3 SINE B2 1 216 0 8 1003 704 111 274 0 chr11 54794620 54794737 -67049119 + B1_Mur4 SINE Alu 2 150 0 8 1003 195 69 0 0 chr11 54794788 54794817 -67049039 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1003 1187 160 45 10 chr11 54794820 54795022 -67048834 + B3 SINE B2 1 209 -7 8 1003 231 326 62 69 chr11 54795509 54795654 -67048202 + MLT1A1 LTR MaLR 4 147 -261 8 1003 564 323 169 18 chr11 54795956 54796089 -67047767 + MLT1C LTR MaLR 80 226 -241 8 1003 913 173 17 11 chr11 54796089 54796264 -67047592 + B2_Mm2 SINE B2 1 176 -19 8 1003 564 323 169 18 chr11 54796264 54796467 -67047389 + MLT1C LTR MaLR 227 467 0 8 1003 630 194 0 0 chr11 54797244 54797347 -67046509 + B3A SINE B2 1 103 -95 8 1003 369 0 0 0 chr11 54797348 54797389 -67046467 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1003 255 31 0 0 chr11 54797389 54797420 -67046436 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1003 240 179 0 0 chr11 54797773 54797812 -67046044 + Kanga1a DNA Tc2 260 298 -456 8 1003 415 329 105 0 chr11 54797912 54798055 -67045801 + RSINE1 SINE B4 4 161 -4 8 1003 319 304 140 18 chr11 54799016 54799187 -67044669 - MIR SINE MIR -32 230 39 8 1003 736 199 7 30 chr11 54800253 54800388 -67043468 - ID_B1 SINE B4 -8 216 85 8 1003 1100 110 14 0 chr11 54801239 54801385 -67042471 - B1_Mur2 SINE Alu -1 148 1 8 1003 526 261 8 25 chr11 54801387 54801505 -67042351 - PB1D7 SINE Alu 0 120 5 8 1003 747 266 16 0 chr11 54801540 54801732 -67042124 + B3A SINE B2 4 198 0 8 1003 1137 101 0 0 chr11 54801737 54801885 -67041971 + B1_Mus1 SINE Alu 1 148 0 8 1003 257 0 0 29 chr11 54801920 54801954 -67041902 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 8 1003 479 327 80 14 chr11 54802330 54802606 -67041250 + L1MB3 LINE L1 5845 6138 -45 8 1003 292 262 171 19 chr11 54802610 54802715 -67041141 + B4 SINE B4 3 123 -169 8 1003 220 310 92 8 chr11 54802715 54802740 -67041116 + B2_Mm1a SINE B2 3 143 -50 8 1003 279 167 0 0 chr11 54802790 54802838 -67041018 + RSINE1 SINE B4 78 125 -40 8 1003 328 276 73 42 chr11 54802847 54802892 -67040964 - ID_B1 SINE B4 -49 243 132 8 1003 439 148 82 47 chr11 54802892 54802977 -67040879 - B1F2 SINE Alu -44 105 18 8 1003 328 276 73 42 chr11 54802977 54802996 -67040860 - ID_B1 SINE B4 -49 131 79 8 1003 23 0 0 0 chr11 54803042 54803065 -67040791 + AT_rich Low_complexity Low_complexity 1 23 0 8 1003 198 91 0 0 chr11 54804434 54804467 -67039389 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1003 229 267 57 65 chr11 54805212 54805336 -67038520 + RLTR25B LTR ERVK 416 538 -490 8 1003 520 162 0 7 chr11 54805241 54805377 -67038479 + B1_Mur4 SINE Alu 44 150 0 8 1003 237 128 0 0 chr11 54805378 54805425 -67038431 + (A)n Simple_repeat Simple_repeat 1 47 0 8 1003 1200 134 11 21 chr11 54805425 54805615 -67038241 + B2_Mm2 SINE B2 1 188 -7 8 1003 261 86 52 0 chr11 54805624 54805682 -67038174 + (CAAAAA)n Simple_repeat Simple_repeat 2 62 0 8 1003 223 260 11 56 chr11 54806158 54806337 -67037519 + C-rich Low_complexity Low_complexity 5 175 0 8 1003 200 230 0 98 chr11 54806412 54806605 -67037251 + C-rich Low_complexity Low_complexity 5 178 0 8 1003 325 203 95 0 chr11 54806648 54806722 -67037134 - ID4_ SINE ID -1 82 2 8 1003 421 316 36 7 chr11 54806912 54807052 -67036804 - MER45A DNA Tip100 -33 145 2 8 1003 692 223 126 68 chr11 54807201 54807408 -67036448 + B4 SINE B4 3 221 -71 8 1003 189 0 0 0 chr11 54807438 54807459 -67036397 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 8 1003 258 229 46 46 chr11 54807484 54807571 -67036285 + B4 SINE B4 80 166 -126 8 1003 225 276 162 10 chr11 54807498 54807597 -67036259 + PB1D7 SINE Alu 7 120 0 8 1003 748 190 113 0 chr11 54807598 54807740 -67036116 + RSINE1 SINE B4 2 159 -6 8 1003 369 298 78 13 chr11 54808731 54808884 -67034972 + MIR3 SINE MIR 28 190 -18 8 1003 787 173 14 0 chr11 54809053 54809192 -67034664 - B1_Mus1 SINE Alu -6 142 2 8 1003 192 229 125 47 chr11 54809474 54809571 -67034285 - MIR SINE MIR -119 149 44 8 1003 630 187 102 22 chr11 54810364 54810501 -67033355 - B1_Mur1 SINE Alu 0 149 2 8 1003 577 252 8 31 chr11 54810641 54810768 -67033088 - ID_B1 SINE B4 -13 211 88 8 1003 860 199 0 20 chr11 54810789 54810938 -67032918 - B1_Mur1 SINE Alu -1 148 3 8 1003 346 289 0 0 chr11 54811037 54811113 -67032743 - ID2 SINE ID -3 80 5 8 1003 585 0 0 0 chr11 54812208 54812273 -67031583 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1003 198 330 17 43 chr11 54812797 54812914 -67030942 + L2 LINE L2 235 348 -3071 8 1003 554 186 257 0 chr11 54812920 54813033 -67030823 - B1_Mur1 SINE Alu -7 142 1 8 1003 282 298 46 78 chr11 54813480 54813633 -67030223 - MER63B DNA AcHobo 0 436 289 8 1003 302 298 17 50 chr11 54813800 54813920 -67029936 - MER103 DNA DNA -48 118 3 9 1003 182 208 125 0 chr11 54814228 54814276 -67029580 - L3 LINE CR1 -142 4347 4294 9 1003 372 103 0 0 chr11 54814291 54814349 -67029507 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 9 1003 736 244 72 6 chr11 54814352 54814533 -67029323 - B3 SINE B2 -19 197 5 9 1003 850 109 28 49 chr11 54815356 54815500 -67028356 + B1_Mus1 SINE Alu 5 145 -3 9 1003 1380 77 0 12 chr11 54815523 54815773 -67028083 + (TCTA)n Simple_repeat Simple_repeat 1 247 0 9 1003 758 288 16 32 chr11 54815773 54815797 -67028059 - B3 SINE B2 -28 188 165 9 1003 539 29 0 14 chr11 54815797 54815867 -67027989 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 9 1003 879 237 12 1 chr11 54815867 54816032 -67027824 - B3A SINE B2 -52 164 2 9 1003 392 321 101 29 chr11 54816063 54816201 -67027655 - RSINE1 SINE B4 -2 163 16 9 1003 1175 68 0 0 chr11 54816236 54816383 -67027473 - B1_Mus1 SINE Alu -1 147 1 9 1003 266 289 156 0 chr11 54816385 54816475 -67027381 - PB1D10 SINE Alu 0 117 14 9 1003 245 279 50 12 chr11 54816409 54816489 -67027367 - ID_B1 SINE B4 -63 161 79 9 1003 338 264 87 40 chr11 54816687 54816813 -67027043 + MTD LTR MaLR 5 136 -283 9 1003 1184 178 26 0 chr11 54816810 54817001 -67026855 - B3 SINE B2 -2 214 19 9 1003 721 237 128 30 chr11 54816974 54817244 -67026612 + MTE2a LTR MaLR 47 394 -27 9 1003 297 209 0 0 chr11 54817245 54817312 -67026544 + CT-rich Low_complexity Low_complexity 2 68 0 9 1003 279 54 0 0 chr11 54818984 54819021 -67024835 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1003 662 240 32 0 chr11 54819582 54819707 -67024149 - B1F2 SINE Alu -19 130 2 9 1003 237 224 27 82 chr11 54820167 54820240 -67023616 + LTR89 LTR ERVL? 564 632 -247 9 1003 741 204 135 47 chr11 54820617 54820787 -67023069 - B3A SINE B2 -12 186 2 9 1003 278 242 212 0 chr11 54820792 54820891 -67022965 - PB1D9 SINE Alu 0 120 1 9 1003 326 247 5 18 chr11 54820822 54820897 -67022959 - B4A SINE B4 -71 153 79 9 1003 221 250 52 109 chr11 54821845 54821992 -67021864 + L2b LINE L2 3012 3152 -235 9 1003 373 247 35 0 chr11 54822198 54822368 -67021488 + (TGGA)n Simple_repeat Simple_repeat 1 176 0 9 1003 293 153 23 34 chr11 54822423 54822511 -67021345 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 9 1003 630 255 110 13 chr11 54822915 54823070 -67020786 + ID_B1 SINE B4 1 170 -54 9 1003 211 172 95 79 chr11 54823035 54823098 -67020758 + PB1D10 SINE Alu 54 117 0 9 1003 205 306 16 31 chr11 54823408 54823472 -67020384 + MIR SINE MIR 89 151 -57 9 1003 229 269 39 0 chr11 54823658 54823710 -67020146 - ID4_ SINE ID -18 65 12 9 1003 802 258 130 12 chr11 54823729 54823976 -67019880 - B4A SINE B4 -16 276 1 9 1003 303 243 14 0 chr11 54823998 54824068 -67019788 - PB1D10 SINE Alu -41 76 6 9 1003 1054 130 171 5 chr11 54824743 54824936 -67018920 - URR1B DNA MER1_type 0 225 1 9 1003 216 221 177 10 chr11 54825021 54825117 -67018739 + L2b LINE L2 3239 3350 -25 9 1003 871 138 171 26 chr11 54825810 54826003 -67017853 + URR1A DNA MER1_type 5 225 -1 9 1003 322 280 103 12 chr11 54826434 54826531 -67017325 + ID4 SINE ID 4 109 -43 9 1003 967 142 62 11 chr11 54826706 54826884 -67016972 + B2_Mm2 SINE B2 9 195 0 9 1003 342 296 176 23 chr11 54827006 54827227 -67016629 + RMER15 LTR ERVL 275 529 -46 9 1003 534 31 0 0 chr11 54827717 54827781 -67016075 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 1003 237 328 0 0 chr11 54827783 54827841 -67016015 - B4 SINE B4 -19 273 216 9 1003 866 120 82 8 chr11 54827843 54827977 -67015879 - B1_Mur1 SINE Alu -3 146 3 9 1003 576 250 6 38 chr11 54828034 54828192 -67015664 - RSINE1 SINE B4 -9 156 4 9 1003 747 203 80 0 chr11 54828228 54828366 -67015490 - B1_Mur2 SINE Alu 0 149 1 9 1003 743 265 40 44 chr11 54828366 54828591 -67015265 - B4 SINE B4 -65 227 4 9 1003 180 204 23 0 chr11 54828599 54828643 -67015213 - MIRc SINE MIR -20 248 204 9 1003 650 224 0 0 chr11 54829986 54830111 -67013745 - ID_B1 SINE B4 0 224 100 9 1003 620 211 39 84 chr11 54830111 54830139 -67013717 - B1F SINE Alu 0 147 2 9 1003 371 304 9 4 chr11 54830951 54831186 -67012670 + (TCCA)n Simple_repeat Simple_repeat 1 236 0 9 1003 196 274 39 0 chr11 54831319 54831370 -67012486 + L2b LINE L2 3265 3317 -58 9 1003 1258 172 67 0 chr11 54831381 54831590 -67012266 + URR1A DNA MER1_type 1 223 -3 9 1003 736 219 83 13 chr11 54832121 54832278 -67011578 - MTE2b LTR MaLR 0 379 212 9 1003 1491 151 0 18 chr11 54833311 54833540 -67010316 + URR1B DNA MER1_type 1 225 0 9 1003 255 303 130 58 chr11 54835059 54835213 -67008643 + MER76 LTR ERVL 275 439 -252 9 1003 1905 155 22 69 chr11 54838064 54838524 -67005332 + RMER17C LTR ERVK 16 440 -518 9 1003 22 0 0 0 chr11 54838748 54838770 -67005086 + AT_rich Low_complexity Low_complexity 1 22 0 9 1003 960 207 75 15 chr11 54838770 54838971 -67004885 - B3 SINE B2 -2 214 2 9 1003 1120 175 6 0 chr11 54839073 54839250 -67004606 - URR1B DNA MER1_type -47 178 1 9 1003 534 282 8 0 chr11 54839251 54839368 -67004488 - B3A SINE B2 -80 118 1 9 1003 586 250 101 39 chr11 54839401 54839609 -67004247 - ID_B1 SINE B4 -3 221 1 9 1003 524 216 27 0 chr11 54839991 54840102 -67003754 - PB1D7 SINE Alu 0 120 7 9 1003 804 212 0 14 chr11 54840226 54840374 -67003482 + B1_Mur2 SINE Alu 4 149 0 9 1003 465 34 0 0 chr11 54840512 54840571 -67003285 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1003 324 317 33 0 chr11 54840982 54841102 -67002754 + LTR37A LTR ERV1 25 148 -278 9 1003 373 273 126 38 chr11 54841120 54841303 -67002553 + LTR37A LTR ERV1 196 394 -32 9 1003 180 0 0 0 chr11 54841516 54841536 -67002320 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 9 1003 487 186 70 0 chr11 54842449 54842535 -67001321 - RSINE1 SINE B4 -56 109 18 9 1003 546 206 131 7 chr11 54842640 54842777 -67001079 + ID_B1 SINE B4 67 220 -4 9 1003 230 178 0 43 chr11 54842894 54842988 -67000868 + (TTTAG)n Simple_repeat Simple_repeat 1 90 0 9 1003 505 286 18 0 chr11 54843543 54843655 -67000201 + RSINE1 SINE B4 45 158 -7 9 1003 252 0 0 0 chr11 54843655 54843683 -67000173 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 1003 25 0 0 0 chr11 54843685 54843710 -67000146 + AT_rich Low_complexity Low_complexity 1 25 0 9 1003 524 191 32 73 chr11 54843768 54843892 -66999964 - PB1D7 SINE Alu 0 120 2 9 1003 1172 76 5 96 chr11 54843909 54844009 -66999847 + B2_Mm1t SINE B2 1 101 -92 9 1003 1281 21 7 0 chr11 54844009 54844154 -66999702 + B1_Mus2 SINE Alu 1 146 -1 9 1003 1172 76 5 96 chr11 54844154 54844241 -66999615 + B2_Mm1t SINE B2 102 171 -22 9 1003 357 111 0 67 chr11 54844258 54844347 -66999509 + B2_Mm2 SINE B2 47 181 -14 9 1003 472 298 137 11 chr11 54844446 54844636 -66999220 - ID_B1 SINE B4 0 224 11 9 1003 273 98 0 0 chr11 54845426 54845467 -66998389 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 9 1003 198 0 0 0 chr11 54845702 54845724 -66998132 + (G)n Simple_repeat Simple_repeat 1 22 0 9 1003 232 300 0 12 chr11 54846264 54846345 -66997511 - MIRb SINE MIR -134 134 55 9 1003 21 0 0 0 chr11 54846671 54846692 -66997164 + GC_rich Low_complexity Low_complexity 1 21 0 9 1003 262 355 65 7 chr11 54847315 54847454 -66996402 - MIRm SINE MIR -77 199 53 9 1003 21 57 0 0 chr11 54847784 54847819 -66996037 + AT_rich Low_complexity Low_complexity 1 35 0 9 1003 479 109 157 10 chr11 54848152 54848254 -66995602 + ID_B1 SINE B4 102 218 -6 9 1003 913 191 133 5 chr11 54848268 54848463 -66995393 + ID_B1 SINE B4 2 221 -3 9 1003 639 281 0 19 chr11 54848693 54848849 -66995007 - RSINE1 SINE B4 -12 153 1 9 1003 341 336 201 13 chr11 54848906 54849298 -66994558 - L2a LINE L2 -13 3413 2948 9 1003 317 284 92 56 chr11 54849368 54849510 -66994346 - L1MB5 LINE L1 -68 6106 5960 9 1003 660 254 7 17 chr11 54849516 54849681 -66994175 - ID_B1 SINE B4 -46 246 87 9 1003 299 244 64 48 chr11 54849681 54849806 -66994050 - L1ME1 LINE L1 -187 5991 5865 9 1003 1122 167 24 40 chr11 54849813 54850343 -66993513 - RMER17C LTR ERVK 0 410 1 9 1003 2063 132 94 3 chr11 54850354 54850696 -66993160 + RLTR14 LTR ERV1 7 379 -3 9 1003 267 315 54 0 chr11 54850697 54850827 -66993029 - L1ME1 LINE L1 -324 5850 5714 9 1003 339 211 18 18 chr11 54850953 54851064 -66992792 + CT-rich Low_complexity Low_complexity 1 111 0 9 1003 546 213 56 37 chr11 54851143 54851304 -66992552 - L1ME1 LINE L1 -571 5609 5446 9 1003 1018 181 33 74 chr11 54851359 54851574 -66992282 - ID_B1 SINE B4 -1 223 18 9 1003 199 156 41 82 chr11 54851588 54851637 -66992219 + L2 LINE L2 1741 1787 -1632 9 1003 384 305 92 78 chr11 54851637 54851779 -66992077 + ID_B1 SINE B4 55 198 -26 9 1003 507 86 12 0 chr11 54852008 54852089 -66991767 - L1Md_F2 LINE L1 0 6582 6501 9 1003 907 111 12 56 chr11 54852089 54852251 -66991605 - B2_Mm2 SINE B2 0 195 41 9 1003 448 185 37 0 chr11 54852250 54852331 -66991525 - ID_B1 SINE B4 -39 185 102 9 1003 227 237 27 162 chr11 54852341 54852359 -66991497 - RLTR13D5 LTR ERVK -628 393 300 9 1003 290 233 0 32 chr11 54852382 54852444 -66991412 + B1_Mur4 SINE Alu 1 60 -90 9 1003 1040 139 0 43 chr11 54852444 54852658 -66991198 + (CAGAGA)n Simple_repeat Simple_repeat 1 204 0 9 1003 230 140 0 39 chr11 54852626 54852678 -66991178 + GA-rich Low_complexity Low_complexity 1 50 0 9 1003 271 188 58 77 chr11 54852678 54852782 -66991074 + RLTR25B LTR ERVK 397 498 -530 9 1003 771 57 9 28 chr11 54852722 54852830 -66991026 + B1_Mus2 SINE Alu 42 147 0 9 1003 21 0 0 0 chr11 54853011 54853032 -66990824 + AT_rich Low_complexity Low_complexity 1 21 0 9 1003 1052 166 42 51 chr11 54853585 54853801 -66990055 + B3 SINE B2 1 214 -2 1 1003 414 268 93 0 chr11 54853831 54853928 -66989928 + PB1D9 SINE Alu 2 107 -13 1 1003 1225 74 0 0 chr11 54853956 54854104 -66989752 - B1_Mus1 SINE Alu 0 148 1 1 1003 835 189 7 0 chr11 54854169 54854312 -66989544 + B1_Mur1 SINE Alu 1 144 -5 1 1003 303 140 0 0 chr11 54854312 54854362 -66989494 + (ATG)n Simple_repeat Simple_repeat 1 50 0 1 1003 230 317 54 77 chr11 54854440 54854482 -66989374 + MT2B2 LTR ERVL 116 218 -366 1 1003 398 250 12 0 chr11 54854482 54854562 -66989294 + ID_B1 SINE B4 77 157 -67 1 1003 297 0 0 0 chr11 54854768 54854801 -66989055 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 1 1003 817 175 0 21 chr11 54854802 54854942 -66988914 - B1_Mur3 SINE Alu -11 138 2 1 1003 1111 147 90 15 chr11 54854949 54855149 -66988707 - B3 SINE B2 0 216 2 1 1003 185 65 0 31 chr11 54855156 54855188 -66988668 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1003 267 224 137 39 chr11 54855188 54855282 -66988574 - ID_B1 SINE B4 -32 192 87 1 1003 377 257 60 68 chr11 54855371 54855488 -66988368 - PB1D7 SINE Alu -2 118 3 1 1003 238 359 22 0 chr11 54855681 54855773 -66988083 - Tigger5 DNA MER2_type -915 1491 1398 1 1003 937 239 42 18 chr11 54855921 54856138 -66987718 + ID_B1 SINE B4 2 223 -1 1 1003 774 226 88 25 chr11 54856421 54856625 -66987231 + ID_B1 SINE B4 4 220 -4 1 1003 1353 164 119 132 chr11 54856715 54857029 -66986827 + ORR1D1 LTR MaLR 1 319 -55 1 1003 533 178 49 10 chr11 54857029 54857131 -66986725 + PB1D9 SINE Alu 2 107 -13 1 1003 1353 164 119 132 chr11 54857131 54857195 -66986661 + ORR1D1 LTR MaLR 320 374 0 1 1003 600 225 57 91 chr11 54857714 54857944 -66985912 + RMER20B LTR ERVK 101 322 -305 1 1003 1144 90 7 0 chr11 54857944 54858089 -66985767 + B1_Mus1 SINE Alu 3 148 0 1 1003 459 332 108 41 chr11 54858089 54858241 -66985615 + RMER20B LTR ERVK 334 493 -23 1 1003 1033 248 36 12 chr11 54858346 54858595 -66985261 + B4 SINE B4 8 262 -30 1 1003 864 70 0 0 chr11 54858598 54858727 -66985129 + (CA)n Simple_repeat Simple_repeat 2 130 0 1 1003 673 222 73 15 chr11 54858820 54858957 -66984899 - B1_Mur1 SINE Alu 0 149 5 1 1003 336 262 0 0 chr11 54859282 54859385 -66984471 + (TCCA)n Simple_repeat Simple_repeat 4 106 0 1 1003 261 256 0 0 chr11 54859480 54859562 -66984294 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 1 1003 818 152 6 0 chr11 54859582 54859740 -66984116 + (TCCA)n Simple_repeat Simple_repeat 3 161 0 1 1003 893 248 5 15 chr11 54860524 54860721 -66983135 - ID_B1 SINE B4 -1 223 29 1 1003 310 182 36 0 chr11 54860672 54860727 -66983129 - ID4_ SINE ID -7 76 20 1 1003 367 254 285 0 chr11 54860912 54861042 -66982814 - Cheshire DNA MER1_type -2170 250 84 1 1003 767 186 0 23 chr11 54861059 54861191 -66982665 + B1_Mur1 SINE Alu 21 149 0 1 1003 29 0 0 0 chr11 54861191 54861220 -66982636 + AT_rich Low_complexity Low_complexity 1 29 0 1 1003 685 284 34 0 chr11 54861225 54861373 -66982483 + B3A SINE B2 2 154 -44 1 1003 432 277 0 0 chr11 54861376 54861477 -66982379 + ID_B1 SINE B4 122 222 -2 1 1003 564 200 9 28 chr11 54861521 54861629 -66982227 + B3 SINE B2 1 106 -110 1 1003 359 41 20 0 chr11 54862028 54862077 -66981779 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1003 702 211 50 28 chr11 54862077 54862257 -66981599 + B3 SINE B2 29 212 -4 1 1003 1677 21 0 0 chr11 54862350 54862537 -66981319 + B2_Mm1t SINE B2 2 188 -5 1 1003 1256 102 102 0 chr11 54862629 54862834 -66981022 - URR1A DNA MER1_type 0 226 1 1 1003 546 247 293 36 chr11 54862908 54863207 -66980649 + MTE2b LTR MaLR 4 379 0 1 1003 373 260 12 0 chr11 54863360 54863444 -66980412 + PB1D10 SINE Alu 2 87 -61 1 1003 192 40 0 0 chr11 54864918 54864943 -66978913 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1003 966 210 75 5 chr11 54864973 54865174 -66978682 + B3 SINE B2 2 216 0 1 1003 443 270 35 42 chr11 54865236 54865379 -66978477 + RSINE1 SINE B4 24 165 0 1 1003 522 103 0 0 chr11 54865384 54865462 -66978394 + (CAAT)n Simple_repeat Simple_repeat 2 79 0 1 1003 335 266 51 0 chr11 54866702 54866781 -66977075 + MTE2b LTR MaLR 1 83 -296 1 1003 1340 242 73 35 chr11 54866794 54867136 -66976720 + MTEa LTR MaLR 2 356 -23 1 1003 734 281 75 121 chr11 54867626 54868039 -66975817 - MTD LTR MaLR -14 405 12 1 1003 550 200 294 29 chr11 54868051 54868221 -66975635 + B3 SINE B2 2 216 0 1 1003 1103 240 106 35 chr11 54868696 54869007 -66974849 + MTD LTR MaLR 1 333 -86 1 1003 215 281 118 93 chr11 54869179 54869340 -66974516 - MIR3 SINE MIR -3 205 41 1 1003 676 225 0 8 chr11 54869605 54869726 -66974130 + PB1D7 SINE Alu 1 120 0 1 1003 189 0 0 0 chr11 54869756 54869777 -66974079 + (CAAAC)n Simple_repeat Simple_repeat 3 23 0 1 1003 426 39 0 0 chr11 54869780 54869832 -66974024 + (CCA)n Simple_repeat Simple_repeat 1 52 0 1 1003 808 173 29 0 chr11 54869840 54869979 -66973877 + B1F2 SINE Alu 1 143 -6 1 1003 590 266 28 41 chr11 54870027 54870172 -66973684 + RSINE1 SINE B4 23 165 0 1 1003 333 259 106 42 chr11 54870646 54870741 -66973115 - B1F SINE Alu 0 120 20 1 1003 302 43 43 0 chr11 54870795 54870842 -66973014 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 1003 1074 134 78 0 chr11 54870845 54871024 -66972832 + B2_Mm1t SINE B2 1 193 0 1 1003 196 53 26 26 chr11 54871026 54871065 -66972791 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1003 653 235 94 43 chr11 54871070 54871261 -66972595 + B3A SINE B2 2 199 -17 1 1003 323 307 45 73 chr11 54871230 54871305 -66972551 + MT2B2 LTR ERVL 84 153 -431 1 1003 682 178 0 0 chr11 54871305 54871412 -66972444 + B1_Mur3 SINE Alu 1 107 -42 1 1003 226 166 5 82 chr11 54871428 54871504 -66972352 + B1_Mm SINE Alu 76 147 0 1 1003 1457 51 17 0 chr11 54871643 54871819 -66972037 + B2_Mm2 SINE B2 2 180 -15 1 1003 285 217 234 21 chr11 54871869 54871963 -66971893 + PB1D10 SINE Alu 1 114 -3 1 1003 698 248 7 0 chr11 54871968 54872109 -66971747 + B1F1 SINE Alu 2 143 -6 1 1003 635 292 172 18 chr11 54872140 54872736 -66971120 + L1MB7 LINE L1 5432 6112 -62 1 1003 587 235 116 32 chr11 54872879 54873068 -66970788 - B3 SINE B2 -9 207 3 1 1003 448 255 27 33 chr11 54873078 54873228 -66970628 - B1F SINE Alu 0 149 1 1 1003 211 216 39 0 chr11 54873248 54873299 -66970557 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1003 609 297 22 50 chr11 54873338 54873542 -66970314 - B4A SINE B4 -94 198 1 1 1003 474 291 39 23 chr11 54873643 54873773 -66970083 - ID_B1 SINE B4 -7 217 86 1 1003 738 293 5 25 chr11 54874999 54875195 -66968661 + B3A SINE B2 1 192 -6 1 1003 563 232 164 65 chr11 54875218 54875481 -66968375 - B4A SINE B4 -3 289 1 1 1003 743 243 0 0 chr11 54875510 54875654 -66968202 + RSINE1 SINE B4 3 146 -19 1 1003 398 323 32 6 chr11 54875693 54875849 -66968007 - RSINE1 SINE B4 -4 161 2 1 1003 589 199 162 51 chr11 54875880 54876058 -66967798 + B3 SINE B2 5 198 0 1 1003 373 278 111 0 chr11 54876101 54876209 -66967647 + ID_B1 SINE B4 105 224 0 1 1003 552 252 0 9 chr11 54876789 54876897 -66966959 - RSINE1 SINE B4 -10 155 49 1 1003 276 330 75 0 chr11 54876918 54876934 -66966922 - B3A SINE B2 0 198 182 1 1003 252 0 0 0 chr11 54876934 54876962 -66966894 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1003 312 311 15 0 chr11 54876962 54877054 -66966802 - B3 SINE B2 -17 181 80 1 1003 1270 48 0 0 chr11 54877101 54877248 -66966608 + B1_Mm SINE Alu 1 147 0 1 1003 3797 121 31 30 chr11 54877249 54877690 -66966166 + L1_Mur2 LINE L1 3832 4278 -1599 1 1003 360 0 0 0 chr11 54877690 54877730 -66966126 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1 1003 3797 121 31 30 chr11 54877730 54877989 -66965867 + L1_Mur2 LINE L1 4279 4533 -1344 1 1003 5811 132 32 5 chr11 54877979 54878982 -66964874 - L1_Mur3 LINE L1 -338 5542 4513 1 1003 2504 252 50 75 chr11 54878971 54879170 -66964686 + Lx5 LINE L1 5580 5785 -659 1 1003 1231 41 7 0 chr11 54879170 54879315 -66964541 + B1_Mus1 SINE Alu 3 148 0 1 1003 2604 232 39 45 chr11 54879315 54880033 -66963823 + Lx5 LINE L1 5737 6440 -618 1 1003 1079 240 104 39 chr11 54880031 54880417 -66963439 + Lx5 LINE L1 6622 7032 -18 1 1003 350 250 0 0 chr11 54880467 54880539 -66963317 - PB1D10 SINE Alu -45 72 1 1 1003 263 313 71 24 chr11 54880479 54880564 -66963292 - B4A SINE B4 -147 145 57 1 1003 558 216 103 51 chr11 54880987 54881143 -66962713 - RSINE1 SINE B4 0 165 2 1 1003 30 0 0 0 chr11 54881151 54881181 -66962675 + AT_rich Low_complexity Low_complexity 1 30 0 1 1003 1116 178 19 33 chr11 54881189 54881404 -66962452 - B3 SINE B2 0 216 5 1 1003 710 263 7 0 chr11 54881468 54881605 -66962251 + RSINE1 SINE B4 3 140 -25 1 1003 405 102 0 0 chr11 54881612 54881671 -66962185 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1003 1378 90 5 5 chr11 54881688 54881877 -66961979 + B2_Mm1a SINE B2 1 189 -4 1 1003 420 281 32 5 chr11 54881961 54882073 -66961783 + B1F1 SINE Alu 10 122 -27 1 1003 697 174 9 0 chr11 54882073 54882188 -66961668 + B3A SINE B2 2 117 -81 1 1003 253 109 43 0 chr11 54882183 54882229 -66961627 + B1_Mur4 SINE Alu 102 149 -1 1 1003 870 52 11 0 chr11 54882236 54882355 -66961501 + B1_Mus2 SINE Alu 30 147 0 1 1003 312 186 39 103 chr11 54882726 54882804 -66961052 - ID4_ SINE ID -1 82 10 1 1003 1068 226 9 14 chr11 54883147 54883362 -66960494 + B3 SINE B2 1 214 -2 1 1003 278 282 80 53 chr11 54883363 54883376 -66960480 + YREP_Mm Unknown Unknown 117 125 -1687 1 1003 914 230 86 0 chr11 54883376 54883563 -66960293 - B3 SINE B2 -13 203 1 1 1003 278 282 80 53 chr11 54883563 54883736 -66960120 + YREP_Mm Unknown Unknown 126 308 -1504 1 1003 797 203 0 47 chr11 54883595 54883745 -66960111 - ID_B1 SINE B4 -2 222 80 1 1003 359 304 85 43 chr11 54883770 54883793 -66960063 - ID_B1 SINE B4 0 224 83 1 1003 555 236 26 26 chr11 54883793 54883906 -66959950 - B1_Mur1 SINE Alu -35 114 2 1 1003 222 37 0 0 chr11 54883911 54883938 -66959918 + (TTCTG)n Simple_repeat Simple_repeat 4 30 0 1 1003 1189 64 0 0 chr11 54883938 54884079 -66959777 - B1_Mm SINE Alu -6 141 1 1 1003 486 33 0 0 chr11 54884119 54884179 -66959677 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1003 271 233 0 62 chr11 54884179 54884243 -66959613 - B3A SINE B2 -51 147 88 1 1003 309 236 97 0 chr11 54884221 54884293 -66959563 - B2_Mm2 SINE B2 -116 79 1 1 1003 445 312 76 19 chr11 54884419 54884576 -66959280 - MTEa LTR MaLR -7 372 207 1 1003 1320 153 13 18 chr11 54884849 54885075 -66958781 - URR1B DNA MER1_type 0 225 1 1 1003 690 159 7 14 chr11 54885617 54885764 -66958092 + CT-rich Low_complexity Low_complexity 3 148 0 1 1003 571 269 7 29 chr11 54885766 54885904 -66957952 - ID_B1 SINE B4 -1 223 89 1 1003 227 327 57 19 chr11 54886215 54886321 -66957535 + Tigger8 DNA MER2_type 428 537 -129 1 1003 360 247 0 58 chr11 54886317 54886403 -66957453 - ID_B1 SINE B4 -1 223 143 1 1003 606 167 0 34 chr11 54886411 54886529 -66957327 - B1_Mur4 SINE Alu -1 149 36 1 1003 270 234 123 154 chr11 54886413 54886541 -66957315 - B4 SINE B4 -69 223 93 1 1003 243 313 0 12 chr11 54886541 54886625 -66957231 - ID4_ SINE ID 0 83 1 1 1003 270 234 123 154 chr11 54886625 54886658 -66957198 - B4 SINE B4 -200 92 67 1 1003 689 218 0 0 chr11 54887325 54887449 -66956407 + B3A SINE B2 2 125 -73 1 1003 289 125 0 0 chr11 54887463 54887503 -66956353 - B1_Mur4 SINE Alu -110 40 1 1 1003 216 200 25 0 chr11 54887732 54887772 -66956084 - L3 LINE CR1 -110 4379 4339 1 1003 273 57 0 0 chr11 54887776 54887811 -66956045 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1003 807 156 0 69 chr11 54888083 54888228 -66955628 + B1_Mus1 SINE Alu 2 136 -12 1 1003 554 261 123 0 chr11 54888492 54888630 -66955226 + RSINE1 SINE B4 11 165 0 1 1003 470 196 8 132 chr11 54888734 54888863 -66954993 - B1F SINE Alu -19 130 18 1 1003 538 200 277 0 chr11 54888773 54888928 -66954928 - ID_B1 SINE B4 -26 198 1 1 1003 189 74 0 0 chr11 54889430 54889457 -66954399 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1003 630 198 0 0 chr11 54889457 54889563 -66954293 - B1_Mur2 SINE Alu -42 107 2 1 1003 301 267 32 95 chr11 54889479 54889574 -66954282 - MT2B LTR ERVL -361 240 152 1 1003 919 210 112 5 chr11 54889602 54889789 -66954067 - B3 SINE B2 -9 207 1 1 1003 419 274 34 34 chr11 54890257 54890374 -66953482 + PB1D10 SINE Alu 1 117 0 1 1003 560 218 60 0 chr11 54890375 54890508 -66953348 + ID_B1 SINE B4 77 217 -7 1 1003 315 0 0 0 chr11 54890572 54890607 -66953249 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1003 268 376 21 0 chr11 54891044 54891185 -66952671 - MER5A1 DNA MER1_type -4 162 19 1 1003 25 31 0 0 chr11 54891655 54891687 -66952169 + GC_rich Low_complexity Low_complexity 1 32 0 1 1003 700 221 0 0 chr11 54891815 54891955 -66951901 + ID_B1 SINE B4 78 217 -7 1 1003 475 291 70 7 chr11 54891961 54892103 -66951753 + B3A SINE B2 1 151 -47 1 1003 289 258 113 0 chr11 54892103 54892200 -66951656 + PB1D10 SINE Alu 10 117 0 1 1003 370 182 52 0 chr11 54892238 54892315 -66951541 + RSINE1 SINE B4 16 96 -69 1 1003 414 234 0 0 chr11 54892407 54892484 -66951372 + PB1D7 SINE Alu 39 115 -5 1 1003 621 254 104 7 chr11 54892500 54892635 -66951221 + RSINE1 SINE B4 18 165 0 1 1003 452 290 9 0 chr11 54893144 54893251 -66950605 + PB1D7 SINE Alu 1 108 -12 1 1003 1635 146 106 50 chr11 54893251 54893611 -66950245 - ORR1C2 LTR MaLR -4 380 1 1 1003 562 209 104 37 chr11 54893639 54893773 -66950083 + RSINE1 SINE B4 2 144 -21 1 1003 1200 62 0 0 chr11 54893844 54893989 -66949867 + B1_Mm SINE Alu 1 145 -2 1 1003 25 0 0 0 chr11 54893994 54894019 -66949837 + AT_rich Low_complexity Low_complexity 1 25 0 1 1003 1008 233 19 15 chr11 54894022 54894227 -66949629 - B3 SINE B2 -3 213 8 1 1003 23 54 0 0 chr11 54894278 54894315 -66949541 + AT_rich Low_complexity Low_complexity 1 37 0 1 1003 492 247 10 0 chr11 54894373 54894470 -66949386 - RSINE1 SINE B4 -65 100 3 1 1003 585 224 56 56 chr11 54894474 54894616 -66949240 - ID_B1 SINE B4 -2 222 81 1 1003 204 40 0 0 chr11 54894679 54894704 -66949152 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 1 1003 572 177 37 75 chr11 54895579 54895713 -66948143 - B4 SINE B4 0 292 164 1 1003 277 229 66 94 chr11 54895659 54895765 -66948091 - PB1D9 SINE Alu -7 113 11 1 1003 919 189 39 8 chr11 54895765 54895981 -66947875 - ORR1B1 LTR MaLR 0 394 100 1 1003 1905 216 37 14 chr11 54896299 54896730 -66947126 + BGLII_B LTR ERVK 1 441 0 1 1003 941 298 7 49 chr11 54896760 54896838 -66947018 + B4A SINE B4 2 78 -214 1 1003 1345 197 189 25 chr11 54896838 54897198 -66946658 - MTD LTR MaLR 0 419 1 1 1003 941 298 7 49 chr11 54897198 54897423 -66946433 + B4A SINE B4 79 292 0 1 1003 229 313 0 12 chr11 54897428 54897512 -66946344 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1003 249 240 213 8 chr11 54897659 54897781 -66946075 + L1MA10 LINE L1 6179 6325 -9 1 1003 826 123 76 15 chr11 54897787 54897919 -66945937 + B1_Mus1 SINE Alu 2 141 -7 1 1003 21 36 0 0 chr11 54897925 54897953 -66945903 + AT_rich Low_complexity Low_complexity 1 28 0 1 1003 1116 175 14 51 chr11 54897968 54898185 -66945671 - B3 SINE B2 -7 209 1 1 1003 638 246 41 12 chr11 54898306 54898475 -66945381 - ORR1B1 LTR MaLR -185 174 1 1 1003 332 233 0 64 chr11 54898641 54898719 -66945137 + ID SINE ID 1 73 -151 1 1003 256 243 40 27 chr11 54899412 54899450 -66944406 + ORR1B1-int LTR MaLR 605 644 -865 1 1003 805 143 0 0 chr11 54899450 54899569 -66944287 + B1_Mur4 SINE Alu 1 119 -31 1 1003 183 42 0 0 chr11 54899590 54899614 -66944242 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1003 735 209 6 63 chr11 54899615 54899773 -66944083 - B1_Mur1 SINE Alu 0 149 1 1 1003 1684 27 0 0 chr11 54899789 54899976 -66943880 + B2_Mm1t SINE B2 2 188 -5 1 1003 507 248 216 6 chr11 54900045 54900073 -66943783 - B3A SINE B2 -1 197 168 1 1003 336 48 0 0 chr11 54900073 54900115 -66943741 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1003 533 233 218 0 chr11 54900115 54900248 -66943608 - B3 SINE B2 -53 163 2 1 1003 225 278 78 58 chr11 54900516 54900619 -66943237 + Charlie8 DNA MER1_type 45 149 -2279 1 1003 234 0 0 0 chr11 54900826 54900852 -66943004 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 1 1003 778 75 19 0 chr11 54901040 54901146 -66942710 + BC1_Mm scRNA scRNA 1 108 -44 1 1003 196 0 89 22 chr11 54902190 54902235 -66941621 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1003 928 102 0 0 chr11 54902235 54902362 -66941494 - B1_Mus1 SINE Alu -16 132 6 1 1003 829 228 15 58 chr11 54902473 54902678 -66941178 + B3A SINE B2 2 197 -1 1 1003 1253 55 0 0 chr11 54902690 54902836 -66941020 - B1_Mus2 SINE Alu 0 147 2 1 1003 225 273 24 72 chr11 54902890 54902973 -66940883 + ID4_ SINE ID 2 80 -3 1 1003 219 69 0 0 chr11 54903304 54903333 -66940523 + (TGGG)n Simple_repeat Simple_repeat 3 31 0 1 1003 223 128 93 0 chr11 54903744 54903830 -66940026 + G-rich Low_complexity Low_complexity 3 96 0 1 1003 462 242 77 76 chr11 54903970 54904165 -66939691 - LTR48 LTR ERV1 -463 181 1 1 1003 560 228 8 66 chr11 54904245 54904367 -66939489 - ID_B1 SINE B4 -7 217 103 1 1003 469 221 51 103 chr11 54904367 54904392 -66939464 - B1F1 SINE Alu -1 114 1 1 1003 263 290 106 39 chr11 54905184 54905288 -66938568 + PB1D7 SINE Alu 2 112 -8 1 1003 1182 42 7 7 chr11 54905299 54905444 -66938412 + B1_Mm SINE Alu 3 147 0 1 1003 201 74 0 0 chr11 54905444 54905471 -66938385 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1003 625 234 21 7 chr11 54905477 54905619 -66938237 + B1_Mur2 SINE Alu 2 145 -4 1 1003 452 178 369 0 chr11 54905651 54905808 -66938048 - B3 SINE B2 0 216 2 1 1003 286 237 12 73 chr11 54905999 54906081 -66937775 - B3A SINE B2 -120 78 2 1 1003 180 152 0 0 chr11 54906119 54906152 -66937704 + (TGG)n Simple_repeat Simple_repeat 3 35 0 1 1003 805 174 21 7 chr11 54906158 54906303 -66937553 - B1_Mur2 SINE Alu -1 148 2 1 1003 448 248 197 0 chr11 54906314 54906431 -66937425 - B1F1 SINE Alu -8 141 2 1 1003 327 25 0 0 chr11 54906495 54906535 -66937321 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1003 429 248 46 28 chr11 54906705 54906813 -66937043 - B1F1 SINE Alu -30 119 10 1 1003 824 165 71 14 chr11 54906881 54907022 -66936834 + B1_Mur1 SINE Alu 1 149 0 1 1003 236 264 139 0 chr11 54907120 54907192 -66936664 - ID4 SINE ID -1 82 1 1 1003 292 259 12 47 chr11 54907202 54907287 -66936569 - ID4 SINE ID 0 83 2 1 1003 866 299 10 0 chr11 54907781 54907982 -66935874 - ID_B1 SINE B4 -16 208 6 1 1003 295 259 111 53 chr11 54907992 54908132 -66935724 - MIRb SINE MIR -105 157 19 1 1003 1635 127 235 49 chr11 54908380 54908767 -66935089 - RMER6B LTR ERVK -2 459 1 1 1003 1251 48 0 0 chr11 54909119 54909265 -66934591 + B1_Mus2 SINE Alu 2 147 0 1 1003 198 0 0 0 chr11 54909265 54909287 -66934569 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1003 525 104 0 0 chr11 54909727 54909804 -66934052 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1003 225 0 0 0 chr11 54909800 54909825 -66934031 + (TTC)n Simple_repeat Simple_repeat 3 27 0 1 1003 1122 84 0 0 chr11 54909825 54909968 -66933888 - B1_Mus2 SINE Alu 0 147 5 1 1003 1300 119 0 25 chr11 54910101 54910300 -66933556 - B2_Mm2 SINE B2 0 195 2 1 1003 232 252 22 86 chr11 54911265 54911404 -66932452 + (CCCCG)n Simple_repeat Simple_repeat 5 134 0 1 1003 1156 49 35 0 chr11 54912493 54912635 -66931221 - B1_Mm SINE Alu 0 147 1 1 1003 515 158 19 29 chr11 54913133 54913237 -66930619 - ID_B1 SINE B4 -3 221 119 1 1003 238 348 131 5 chr11 54913253 54913475 -66930381 - L1MD3 LINE L1 -53 7942 7693 1 1003 229 290 133 8 chr11 54913475 54913651 -66930205 - MIRb SINE MIR -10 252 58 1 1003 183 80 0 0 chr11 54914433 54914458 -66929398 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1 1003 396 222 0 58 chr11 54914472 54914558 -66929298 - ID4_ SINE ID 0 83 3 1 1003 234 317 28 47 chr11 54914575 54914681 -66929175 + L2c LINE L2 3279 3382 -5 1 1003 354 258 172 43 chr11 54914862 54915048 -66928808 - MIRb SINE MIR -16 252 43 1 1003 244 281 0 128 chr11 54915107 54915119 -66928737 - PB1D10 SINE Alu -22 95 14 1 1003 335 219 207 0 chr11 54915119 54915201 -66928655 - ID_B1 SINE B4 -31 193 95 1 1003 659 171 0 25 chr11 54915231 54915351 -66928505 - PB1D10 SINE Alu 0 117 1 1 1003 252 86 0 0 chr11 54915775 54915810 -66928046 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1003 507 229 225 16 chr11 54916296 54916540 -66927316 - Lx8 LINE L1 -4 7469 7175 1 1003 345 47 0 0 chr11 54916543 54916586 -66927270 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 1 1003 619 289 100 0 chr11 54916705 54916895 -66926961 - ID_B1 SINE B4 -15 209 1 1 1003 385 230 117 29 chr11 54917522 54917625 -66926231 - PB1D7 SINE Alu 0 120 9 1 1003 541 260 229 11 chr11 54917733 54917908 -66925948 - ID_B1 SINE B4 -8 216 4 1 1003 649 229 0 40 chr11 54917913 54918065 -66925791 - ID_B1 SINE B4 0 224 83 1 1003 442 248 8 42 chr11 54918325 54918443 -66925413 - RSINE1 SINE B4 -49 116 3 1 1003 224 314 28 28 chr11 54918864 54918936 -66924920 + PB1D10 SINE Alu 1 72 -45 1 1003 200 271 0 68 chr11 54919011 54919093 -66924763 + MIRb SINE MIR 178 254 -8 1 1004 1036 266 74 7 chr11 54919393 54919662 -66924194 - B4A SINE B4 -4 288 2 1 1004 1060 129 14 0 chr11 54919691 54919838 -66924018 - B1_Mur4 SINE Alu -1 149 1 1 1004 338 301 174 56 chr11 54920753 54920784 -66923072 + ID_B1 SINE B4 53 100 -124 1 1004 313 250 31 132 chr11 54920784 54920913 -66922943 + PB1D10 SINE Alu 1 116 -1 1 1004 1208 28 21 0 chr11 54920992 54921135 -66922721 + B1_Mus2 SINE Alu 1 146 -1 1 1004 412 264 50 3 chr11 54921159 54921286 -66922570 + B4A SINE B4 3 142 -82 1 1004 411 21 0 0 chr11 54921351 54921399 -66922457 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1004 270 327 54 18 chr11 54921759 54921871 -66921985 - B1_Mur3 SINE Alu -1 116 1 1 1004 281 271 10 22 chr11 54922170 54922268 -66921588 + PB1D7 SINE Alu 23 119 -1 1 1004 231 114 0 0 chr11 54923681 54923716 -66920140 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1004 256 265 199 80 chr11 54923800 54924001 -66919855 - Charlie8 DNA MER1_type -2159 269 45 1 1004 782 284 107 34 chr11 54924717 54924950 -66918906 - B4 SINE B4 -21 271 22 1 1004 376 193 202 84 chr11 54924950 54925069 -66918787 - ID_B1 SINE B4 -12 212 80 1 1004 821 159 15 0 chr11 54925695 54925827 -66918029 - B1_Mur1 SINE Alu -7 142 9 1 1004 330 218 179 0 chr11 54926103 54926181 -66917675 + PB1D10 SINE Alu 1 92 -25 1 1004 231 254 0 0 chr11 54926283 54926338 -66917518 + L1MD3 LINE L1 7646 7700 -295 1 1004 437 244 107 30 chr11 54926596 54926727 -66917129 - RSINE1 SINE B4 -15 150 10 1 1004 847 135 0 0 chr11 54926790 54926916 -66916940 - B1_Mur4 SINE Alu -1 149 24 1 1004 2542 131 55 9 chr11 54927312 54927766 -66916090 + RMER17D2 LTR ERVK 1 475 -334 1 1004 394 155 0 0 chr11 54927763 54927821 -66916035 - B1F1 SINE Alu -86 63 6 1 1004 507 278 76 58 chr11 54927907 54928182 -66915674 - B4 SINE B4 -11 281 2 1 1004 22 35 0 0 chr11 54928184 54928213 -66915643 + AT_rich Low_complexity Low_complexity 1 29 0 1 1004 261 0 0 0 chr11 54928213 54928242 -66915614 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1004 650 260 7 46 chr11 54928245 54928398 -66915458 - RSINE1 SINE B4 -17 148 2 1 1004 330 208 26 52 chr11 54928420 54928509 -66915347 - PB1 SINE Alu -5 144 53 1 1004 711 193 40 54 chr11 54928509 54928657 -66915199 - B1_Mur1 SINE Alu -1 148 3 1 1004 330 296 59 118 chr11 54928657 54928721 -66915135 - B1F SINE Alu -97 52 1 1 1004 517 323 41 12 chr11 54928796 54928965 -66914891 - MTEa LTR MaLR -7 372 199 1 1004 459 0 0 0 chr11 54929109 54929160 -66914696 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1004 320 250 4 0 chr11 54929181 54929266 -66914590 - L1MA7 LINE L1 -361 5939 5853 1 1004 369 0 0 0 chr11 54929754 54929795 -66914061 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1004 281 303 40 20 chr11 54929811 54929849 -66914007 + B4A SINE B4 48 87 -205 1 1004 654 148 95 15 chr11 54929849 54929986 -66913870 + B1_Mur1 SINE Alu 2 149 0 1 1004 1630 26 21 0 chr11 54929990 54930179 -66913677 + B2_Mm1a SINE B2 1 193 0 1 1004 1260 97 11 0 chr11 54930200 54930375 -66913481 + B2_Mm2 SINE B2 5 181 -14 1 1004 438 84 0 10 chr11 54930388 54930502 -66913354 + B2_Mm2 SINE B2 47 195 0 1 1004 1174 62 0 14 chr11 54930880 54931026 -66912830 - B1_Mus1 SINE Alu 0 148 5 1 1004 528 242 22 36 chr11 54931132 54931269 -66912587 - ID_B1 SINE B4 -9 215 81 1 1004 538 251 114 19 chr11 54931287 54931498 -66912358 + Tigger1 DNA MER2_type 26 256 -2162 1 1004 2609 106 7 73 chr11 54932435 54932859 -66910997 + ORR1B1 LTR MaLR 1 386 -8 1 1004 739 287 6 11 chr11 54932863 54933039 -66910817 - B3A SINE B2 -23 175 1 1 1004 557 205 82 0 chr11 54933205 54933327 -66910529 - ID_B1 SINE B4 0 224 93 1 1004 247 200 0 22 chr11 54933462 54933508 -66910348 + B4 SINE B4 39 83 -209 1 1004 405 0 0 0 chr11 54933536 54933581 -66910275 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1004 2017 165 41 25 chr11 54933598 54933796 -66910060 - ORR1C1 LTR MaLR 0 378 182 1 1004 366 23 0 0 chr11 54933796 54933839 -66910017 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1004 2017 165 41 25 chr11 54933839 54934007 -66909849 - ORR1C1 LTR MaLR -197 181 6 1 1004 787 262 18 27 chr11 54933997 54934217 -66909639 + Tigger1 DNA MER2_type 395 612 -1806 1 1004 268 268 12 12 chr11 54934387 54934470 -66909386 - ID4 SINE ID 0 83 1 1 1004 381 158 28 167 chr11 54934487 54934631 -66909225 - PB1 SINE Alu -3 124 1 1 1004 257 218 14 42 chr11 54934999 54935145 -66908711 + GA-rich Low_complexity Low_complexity 1 141 0 1 1004 250 359 19 19 chr11 54935324 54935429 -66908427 - MIR3 SINE MIR -15 193 89 1 1004 1416 93 5 5 chr11 54935520 54935715 -66908141 + B2_Mm2 SINE B2 1 195 0 1 1004 1252 48 0 0 chr11 54935853 54935999 -66907857 + B1_Mm SINE Alu 2 147 0 1 1004 198 0 0 0 chr11 54936020 54936042 -66907814 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1004 435 262 74 9 chr11 54936068 54936176 -66907680 - B3A SINE B2 -46 152 38 1 1004 2821 107 74 29 chr11 54936176 54936320 -66907536 + ORR1B2-int LTR MaLR 949 1075 -434 1 1004 690 13 0 0 chr11 54936320 54936399 -66907457 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 1004 2821 113 132 14 chr11 54936399 54936785 -66907071 + ORR1B2-int LTR MaLR 1076 1508 -1 1 1004 1618 147 125 16 chr11 54936785 54937097 -66906759 + ORR1B2 LTR MaLR 1 346 -21 1 1004 984 139 13 13 chr11 54937079 54937276 -66906580 + ORR1B2 LTR MaLR 121 315 -14 1 1004 388 111 0 0 chr11 54937641 54937695 -66906161 + ORR1B2 LTR MaLR 312 365 -2 1 1004 1051 66 73 0 chr11 54937862 54937998 -66905858 - B1_Mm SINE Alu 0 147 2 1 1004 755 238 13 24 chr11 54937999 54938190 -66905666 - B4A SINE B4 -40 252 60 1 1004 213 39 0 0 chr11 54938827 54938853 -66905003 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1004 335 259 0 36 chr11 54938858 54938942 -66904914 - B4A SINE B4 -11 281 201 1 1004 21 0 0 0 chr11 54939436 54939457 -66904399 + AT_rich Low_complexity Low_complexity 1 21 0 1 1004 631 277 59 59 chr11 54939643 54939915 -66903941 - B4A SINE B4 -19 273 2 1 1004 691 238 7 0 chr11 54940027 54940170 -66903686 + B1F1 SINE Alu 5 148 -1 1 1004 627 226 111 82 chr11 54940516 54940723 -66903133 - ID_B1 SINE B4 0 224 12 1 1004 778 292 33 28 chr11 54940913 54941128 -66902728 - B4A SINE B4 -74 218 3 1 1004 1300 20 0 0 chr11 54941160 54941306 -66902550 - B1_Mm SINE Alu 0 147 2 1 1004 215 359 22 0 chr11 54941613 54941705 -66902151 - MIRc SINE MIR -35 233 140 1 1004 202 286 0 0 chr11 54941807 54941856 -66902000 - MIR SINE MIR -21 241 193 1 1004 390 21 0 0 chr11 54942418 54942465 -66901391 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1 1004 582 299 0 7 chr11 54942465 54942603 -66901253 + ID_B1 SINE B4 84 220 -4 1 1004 237 178 0 0 chr11 54942614 54942659 -66901197 + (CAT)n Simple_repeat Simple_repeat 2 46 0 1 1004 953 191 132 98 chr11 54943284 54943610 -66900246 - RMER12 LTR ERVK 0 1322 986 1 1004 216 0 0 0 chr11 54943614 54943638 -66900218 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1004 615 14 0 0 chr11 54943638 54943709 -66900147 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1004 4968 104 32 15 chr11 54943710 54944449 -66899407 - RMER12 LTR ERVK -570 752 1 1 1004 761 220 76 107 chr11 54945259 54945483 -66898373 - ID_B1 SINE B4 -5 219 3 1 1004 555 269 182 10 chr11 54945522 54945830 -66898026 - L1MB4 LINE L1 -3 6177 5817 1 1004 450 183 204 0 chr11 54945835 54945928 -66897928 + B3A SINE B2 6 117 -81 1 1004 474 18 0 0 chr11 54945935 54945990 -66897866 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1004 456 19 0 0 chr11 54945990 54946042 -66897814 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1004 285 233 0 0 chr11 54946366 54946426 -66897430 - ID_B1 SINE B4 -5 219 160 1 1004 232 242 161 0 chr11 54946451 54946513 -66897343 + MLT1D LTR MaLR 1 72 -433 1 1004 674 221 8 15 chr11 54946560 54946693 -66897163 - B1_Mur2 SINE Alu -2 147 16 1 1004 384 284 96 56 chr11 54946829 54947110 -66896746 + MLT1D LTR MaLR 109 400 -105 1 1004 924 265 14 0 chr11 54947144 54947359 -66896497 + ID_B1 SINE B4 3 220 -4 1 1004 885 259 66 5 chr11 54947423 54947621 -66896235 + ID_B1 SINE B4 12 221 -3 1 1004 501 266 0 0 chr11 54947978 54948087 -66895769 - RSINE1 SINE B4 -11 154 46 1 1004 1022 227 84 22 chr11 54948155 54948430 -66895426 - B4A SINE B4 0 292 1 1 1004 792 225 148 6 chr11 54949144 54949327 -66894529 + B3 SINE B2 1 209 -7 1 1004 998 205 60 30 chr11 54949356 54949557 -66894299 - B3 SINE B2 -6 210 4 1 1004 768 245 20 20 chr11 54949594 54949794 -66894062 - B4 SINE B4 -8 284 85 1 1004 1167 128 31 26 chr11 54949794 54949987 -66893869 - B2_Mm2 SINE B2 0 195 2 1 1004 243 0 0 0 chr11 54949996 54950023 -66893833 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1004 214 232 0 67 chr11 54950023 54950083 -66893773 - B4 SINE B4 -206 86 31 1 1004 537 311 0 22 chr11 54950092 54950230 -66893626 - ID_B1 SINE B4 -10 214 80 1 1004 1477 68 15 20 chr11 54950952 54951148 -66892708 - B2_Mm2 SINE B2 0 195 1 1 1004 462 268 9 0 chr11 54951284 54951396 -66892460 - ID_B1 SINE B4 -6 218 106 1 1004 324 0 0 0 chr11 54951547 54951583 -66892273 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1004 267 326 101 34 chr11 54951705 54951883 -66891973 + YREP_Mm Unknown Unknown 108 297 -1515 1 1004 534 305 14 47 chr11 54951753 54951901 -66891955 - ID_B1 SINE B4 -1 223 81 1 1004 231 36 0 0 chr11 54952387 54952415 -66891441 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1004 1264 48 0 0 chr11 54952415 54952562 -66891294 - B1_Mm SINE Alu 0 147 1 1 1004 458 219 12 0 chr11 54952587 54952669 -66891187 - ID4_ SINE ID 0 83 1 1 1004 237 334 14 43 chr11 54953188 54953314 -66890542 + MIR SINE MIR 35 165 -111 1 1004 189 0 0 0 chr11 54953702 54953723 -66890133 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1004 741 257 141 18 chr11 54953874 54954229 -66889627 - MTD LTR MaLR 0 419 1 1 1004 329 271 41 10 chr11 54954808 54954905 -66888951 + MTEb LTR MaLR 3 102 -277 1 1004 796 199 13 33 chr11 54954905 54955056 -66888800 + B1_Mur2 SINE Alu 2 149 0 1 1004 1267 230 28 14 chr11 54955087 54955369 -66888487 + MTEb LTR MaLR 92 377 -2 1 1004 234 240 151 57 chr11 54955403 54955448 -66888408 + PB1D10 SINE Alu 1 116 -1 1 1004 238 262 0 0 chr11 54955448 54955509 -66888347 + ID_B1 SINE B4 163 223 -1 1 1004 189 94 0 0 chr11 54955885 54955917 -66887939 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1004 1013 161 10 59 chr11 54955932 54956136 -66887720 + B3A SINE B2 3 196 -2 1 1004 289 206 49 110 chr11 54956573 54956655 -66887201 - ID_B1 SINE B4 -5 219 143 1 1004 432 0 0 0 chr11 54957271 54957319 -66886537 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1 1004 758 106 0 8 chr11 54957319 54957443 -66886413 + (GGGAA)n Simple_repeat Simple_repeat 2 124 0 1 1004 195 281 253 52 chr11 54957536 54957690 -66886166 + MIR SINE MIR 40 224 -44 1 1004 266 282 49 49 chr11 54957804 54957842 -66886014 - ID SINE ID -141 83 2 1 1004 273 182 0 0 chr11 54957842 54957886 -66885970 - ID4 SINE ID -38 45 2 1 1004 332 190 74 25 chr11 54957896 54957977 -66885879 - B1F1 SINE Alu -23 126 42 1 1004 797 220 22 33 chr11 54958182 54958365 -66885491 - B3A SINE B2 -16 182 2 1 1004 1076 227 5 5 chr11 54958537 54958754 -66885102 + ID_B1 SINE B4 2 218 -6 1 1004 545 260 166 0 chr11 54958761 54958942 -66884914 + B3 SINE B2 2 212 -4 1 1004 245 274 41 0 chr11 54959130 54959203 -66884653 - B4 SINE B4 -193 99 24 1 1004 332 225 14 0 chr11 54959143 54959214 -66884642 - ID4 SINE ID 0 83 12 1 1004 471 232 276 68 chr11 54959221 54959498 -66884358 - MTEa LTR MaLR -16 363 29 1 1004 422 288 35 81 chr11 54959838 54959924 -66883932 + ID SINE ID 4 81 -143 1 1004 446 248 34 68 chr11 54959924 54960041 -66883815 + B1F1 SINE Alu 1 113 -36 1 1004 390 235 0 0 chr11 54960045 54960194 -66883662 + (CCAA)n Simple_repeat Simple_repeat 4 152 0 1 1004 210 315 123 0 chr11 54961479 54961552 -66882304 - ID2 SINE ID 0 83 2 1 1004 400 250 62 36 chr11 54961559 54961671 -66882185 - B1F SINE Alu -1 148 34 1 1004 357 145 0 0 chr11 54961724 54961800 -66882056 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1004 191 160 40 0 chr11 54962184 54962234 -66881622 + G-rich Low_complexity Low_complexity 1 52 0 1 1004 990 117 0 0 chr11 54962308 54962487 -66881369 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1004 646 189 33 0 chr11 54962832 54962954 -66880902 - ID_B1 SINE B4 -1 223 98 1 1004 207 0 0 0 chr11 54963962 54963985 -66879871 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1004 254 250 0 16 chr11 54964039 54964100 -66879756 - ID4 SINE ID -22 61 2 1 1004 198 71 0 0 chr11 54964716 54964744 -66879112 + (CTG)n Simple_repeat Simple_repeat 3 30 0 1 1004 977 241 32 9 chr11 54965412 54965630 -66878226 + B4 SINE B4 2 224 -68 1 1004 443 259 38 115 chr11 54965656 54965680 -66878176 + B4 SINE B4 72 216 -76 1 1004 773 196 8 0 chr11 54965680 54965813 -66878043 + B1_Mur1 SINE Alu 6 139 -10 1 1004 302 346 60 30 chr11 54965803 54965937 -66877919 + ORR1E LTR MaLR 222 359 0 1 1004 22 35 0 0 chr11 54966013 54966042 -66877814 + AT_rich Low_complexity Low_complexity 1 29 0 1 1004 699 223 0 8 chr11 54966096 54966218 -66877638 - RSINE1 SINE B4 -40 125 5 1 1004 498 33 0 0 chr11 54966240 54966300 -66877556 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1004 4312 115 43 50 chr11 54966300 54967058 -66876798 + RMER6A LTR ERVK 4 756 0 1 1004 1023 251 34 41 chr11 54967059 54967083 -66876773 - B4A SINE B4 -3 289 266 1 1004 714 24 0 0 chr11 54967083 54967167 -66876689 + (GA)n Simple_repeat Simple_repeat 2 85 0 1 1004 1023 251 34 41 chr11 54967167 54967433 -66876423 - B4A SINE B4 -27 265 2 1 1004 1299 27 0 0 chr11 54967475 54967621 -66876235 - B1_Mus1 SINE Alu 0 148 3 1 1004 432 0 0 0 chr11 54967718 54967766 -66876090 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1004 463 275 104 16 chr11 54967780 54967972 -66875884 + Lx8 LINE L1 7172 7380 -93 1 1004 304 89 17 35 chr11 54967994 54968052 -66875804 + (GGGAGA)n Simple_repeat Simple_repeat 4 60 0 1 1004 2427 135 31 36 chr11 54968076 54968491 -66875365 + MTC LTR MaLR 6 418 -3 1 1004 272 191 32 0 chr11 54968495 54968558 -66875298 + Lx8 LINE L1 7407 7471 -2 1 1004 277 245 31 55 chr11 54968583 54968712 -66875144 - L1_Rod LINE L1 -558 5622 5455 1 1004 595 236 0 0 chr11 54969097 54969207 -66874649 + B1_Mur1 SINE Alu 40 149 0 1 1004 275 267 44 55 chr11 54969221 54969312 -66874544 + RSINE1 SINE B4 3 92 -73 1 1004 363 55 26 53 chr11 54969316 54969392 -66874464 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 1 1004 209 295 13 0 chr11 54969392 54969470 -66874386 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1004 527 207 132 0 chr11 54969690 54969811 -66874045 - MTEa LTR MaLR -41 338 202 1 1004 354 98 0 0 chr11 54969811 54969862 -66873994 + (AGGGGG)n Simple_repeat Simple_repeat 5 55 0 1 1004 599 294 80 0 chr11 54969862 54970025 -66873831 - MTEa LTR MaLR -165 214 39 1 1004 264 122 0 0 chr11 54970156 54970197 -66873659 + (GGA)n Simple_repeat Simple_repeat 2 42 0 1 1004 567 176 235 42 chr11 54970402 54970568 -66873288 + B3A SINE B2 1 198 0 1 1004 861 247 185 4 chr11 54971035 54971311 -66872545 + MTE2b LTR MaLR 15 340 -39 1 1004 306 0 0 0 chr11 54971468 54971502 -66872354 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1004 283 297 16 0 chr11 54971509 54971573 -66872283 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 1 1004 256 333 0 25 chr11 54971659 54971739 -66872117 - MLT1H LTR MaLR -204 345 268 1 1004 360 253 283 0 chr11 54971797 54971956 -66871900 + B3A SINE B2 2 212 -4 1 1004 250 363 48 19 chr11 54971995 54972099 -66871757 - MLT1H LTR MaLR -377 172 66 1 1004 896 252 23 9 chr11 54973238 54973458 -66870398 + ID_B1 SINE B4 2 224 0 1 1004 831 144 0 0 chr11 54973468 54973607 -66870249 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 1 1004 347 309 36 0 chr11 54973637 54973721 -66870135 + RSINE1 SINE B4 79 165 0 1 1004 456 222 99 53 chr11 54974083 54974235 -66869621 + RLTR14 LTR ERV1 224 382 0 1 1004 471 274 174 22 chr11 54975084 54975222 -66868634 - RSINE1 SINE B4 -4 161 3 1 1004 1078 244 5 9 chr11 54975244 54975459 -66868397 - ID_B1 SINE B4 -10 214 1 1 1004 1023 238 71 15 chr11 54975683 54975952 -66867904 + B4 SINE B4 1 284 -8 1 1004 309 109 0 0 chr11 54975980 54976035 -66867821 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 1 1004 285 98 0 0 chr11 54976060 54976101 -66867755 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1 1004 246 227 23 52 chr11 54976891 54977063 -66866793 + (TATG)n Simple_repeat Simple_repeat 4 170 0 1 1004 1231 253 36 21 chr11 54977068 54977347 -66866509 - B4A SINE B4 0 292 10 1 1004 186 133 0 0 chr11 54977933 54977963 -66865893 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1004 680 208 76 11 chr11 54977993 54978178 -66865678 + L1MB3 LINE L1 5635 5831 -352 1 1004 886 214 26 16 chr11 54978178 54978368 -66865488 + B3A SINE B2 1 192 -6 1 1004 468 188 259 0 chr11 54978404 54978516 -66865340 - B3 SINE B2 -67 149 9 1 1004 821 257 100 36 chr11 54978531 54978996 -66864860 - L1M2 LINE L1 -821 5470 4977 1 1004 360 0 0 0 chr11 54979028 54979068 -66864788 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1004 524 220 0 20 chr11 54979070 54979172 -66864684 - RSINE1 SINE B4 -40 125 26 1 1004 1279 34 0 0 chr11 54979572 54979719 -66864137 + B1_Mus2 SINE Alu 1 147 0 1 1004 406 345 60 0 chr11 54979744 54979912 -66863944 - MER45A DNA Tip100 0 178 1 1 1004 321 26 0 0 chr11 54979958 54979996 -66863860 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1004 292 230 122 0 chr11 54980139 54980213 -66863643 + B1F2 SINE Alu 3 85 -64 1 1004 302 278 57 122 chr11 54980349 54980472 -66863384 + B1F2 SINE Alu 1 115 -34 1 1004 292 287 126 121 chr11 54980472 54980547 -66863309 + B4A SINE B4 93 281 -11 1 1004 23 33 0 0 chr11 54980550 54980580 -66863276 + AT_rich Low_complexity Low_complexity 1 30 0 1 1004 315 160 67 0 chr11 54980616 54980691 -66863165 + L1MD LINE L1 5400 5479 -880 1 1004 1154 101 0 23 chr11 54980703 54980862 -66862994 + B2_Mm2 SINE B2 2 158 -37 1 1004 213 39 0 0 chr11 54980862 54980888 -66862968 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1004 1154 101 0 23 chr11 54980888 54980901 -66862955 + B2_Mm2 SINE B2 159 170 -25 1 1004 241 308 77 0 chr11 54980911 54980976 -66862880 + tRNA-Ala-GCY_ tRNA tRNA 2 71 -4 1 1004 258 232 28 28 chr11 54981063 54981134 -66862722 + ID2 SINE ID 3 73 -10 1 1004 307 322 214 11 chr11 54981161 54981343 -66862513 + L1MD LINE L1 5550 5768 -2227 1 1004 1168 226 9 0 chr11 54981503 54981724 -66862132 - ID_B1 SINE B4 0 224 2 1 1004 830 193 0 40 chr11 54981775 54981926 -66861930 + B1_Mus1 SINE Alu 2 146 -2 1 1004 234 208 0 0 chr11 54982802 54982855 -66861001 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1004 598 318 20 25 chr11 54982866 54983063 -66860793 - B4A SINE B4 0 292 97 1 1004 676 237 0 22 chr11 54983769 54983907 -66859949 - RSINE1 SINE B4 0 165 31 1 1004 232 296 170 44 chr11 54983907 54983920 -66859936 - B3 SINE B2 -36 123 2 1 1004 204 40 0 0 chr11 54984071 54984096 -66859760 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1004 360 161 0 0 chr11 54984267 54984348 -66859508 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1004 334 48 0 0 chr11 54984349 54984391 -66859465 + HAL1-3A_ME LINE L1 1976 2017 -841 1 1004 857 203 78 44 chr11 54984601 54984807 -66859049 - B3 SINE B2 -3 213 1 1 1004 503 170 0 10 chr11 54984856 54984957 -66858899 + CT-rich Low_complexity Low_complexity 2 101 0 1 1004 1635 192 30 103 chr11 54985051 54985458 -66858398 + MTE2a LTR MaLR 3 379 0 1 1004 718 197 253 0 chr11 54985909 54986087 -66857769 - ID_B1 SINE B4 0 224 2 1 1004 751 216 22 0 chr11 54986738 54986877 -66856979 + ID_B1 SINE B4 82 223 -1 1 1004 391 261 92 46 chr11 54986752 54986925 -66856931 - YREP_Mm Unknown Unknown -1513 299 119 1 1004 722 288 73 6 chr11 54986930 54987108 -66856748 + ID_B1 SINE B4 4 193 -31 1 1004 1067 123 0 6 chr11 54987112 54987132 -66856724 + (GAA)n Simple_repeat Simple_repeat 1 20 0 1 1004 1371 62 0 0 chr11 54987132 54987310 -66856546 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1004 1242 111 0 3 chr11 54987310 54987648 -66856208 + (GAA)n Simple_repeat Simple_repeat 1 337 0 1 1004 464 233 0 15 chr11 54987653 54987784 -66856072 + GA-rich Low_complexity Low_complexity 2 130 0 1 1004 342 162 0 0 chr11 54987929 54988003 -66855853 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1004 703 266 113 11 chr11 54988699 54988885 -66854971 + B4A SINE B4 1 205 -87 1 1004 300 164 0 0 chr11 54989021 54989088 -66854768 + GA-rich Low_complexity Low_complexity 1 67 0 1 1004 500 311 91 36 chr11 54989139 54989392 -66854464 + B4A SINE B4 3 269 -23 1 1004 405 0 0 0 chr11 54989393 54989438 -66854418 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1004 187 236 0 27 chr11 54989528 54989602 -66854254 + GA-rich Low_complexity Low_complexity 1 72 0 1 1004 486 0 0 0 chr11 54990551 54990605 -66853251 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1004 491 70 0 14 chr11 54990949 54991022 -66852834 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 1 1004 222 258 44 22 chr11 54991053 54991144 -66852712 + (TATG)n Simple_repeat Simple_repeat 4 96 0 1 1004 943 275 14 34 chr11 54991283 54991577 -66852279 - B4A SINE B4 -4 288 1 1 1004 638 239 66 71 chr11 54991840 54992038 -66851818 + B3A SINE B2 2 198 0 1 1004 392 243 0 0 chr11 54992097 54992167 -66851689 + RSINE1 SINE B4 3 72 -93 1 1004 529 305 90 56 chr11 54993009 54993242 -66850614 + B4 SINE B4 35 275 -17 1 1004 480 59 0 0 chr11 54994380 54994448 -66849408 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1004 402 21 0 0 chr11 54994448 54994495 -66849361 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1004 260 276 17 0 chr11 54994528 54994586 -66849270 - RSINE1 SINE B4 -106 59 1 1 1004 182 323 9 103 chr11 54994794 54994901 -66848955 - MIR3 SINE MIR -54 154 58 1 1004 215 354 94 54 chr11 54995368 54995571 -66848285 - MIR SINE MIR -17 245 35 1 1004 315 307 0 0 chr11 54995916 54995991 -66847865 - ID4 SINE ID -5 78 4 1 1004 1051 213 20 5 chr11 54996053 54996256 -66847600 - ID_B1 SINE B4 -18 206 1 1 1004 191 372 12 25 chr11 54996503 54996583 -66847273 + MIRm SINE MIR 22 100 -176 1 1004 231 114 0 0 chr11 54997742 54997777 -66846079 + (GGA)n Simple_repeat Simple_repeat 1 35 0 1 1004 897 37 0 0 chr11 54998718 54998827 -66845029 + (TTTCC)n Simple_repeat Simple_repeat 2 110 0 1 1004 294 95 0 0 chr11 54998827 54998869 -66844987 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1004 933 276 5 9 chr11 54998869 54999092 -66844764 - ID_B1 SINE B4 0 224 3 1 1004 229 232 0 18 chr11 54999340 54999397 -66844459 - B4A SINE B4 0 292 237 1 1004 811 138 186 17 chr11 54999400 54999577 -66844279 - URR1A DNA MER1_type -19 207 1 1 1004 180 138 0 0 chr11 54999898 54999927 -66843929 - L2b LINE L2 -16 3359 3331 1 1004 389 270 35 106 chr11 55000051 55000221 -66843635 - MT2B LTR ERVL -277 324 167 1 1004 811 161 0 8 chr11 55000098 55000223 -66843633 - B1_Mur2 SINE Alu -25 124 1 2 1004 741 234 61 127 chr11 55000223 55000467 -66843389 - B4 SINE B4 -64 228 1 3 1004 515 268 113 0 chr11 55000507 55000649 -66843207 + RSINE1 SINE B4 4 161 -4 4 1004 480 282 48 71 chr11 55001626 55001794 -66842062 - RSINE1 SINE B4 0 165 2 5 1004 528 30 0 0 chr11 55001811 55001877 -66841979 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1004 1548 38 38 0 chr11 55001911 55002094 -66841762 - B2_Mm2 SINE B2 -4 191 2 7 1004 587 298 151 29 chr11 55002279 55002434 -66841422 - L1MA6 LINE L1 -6 6294 6139 8 1004 724 201 29 0 chr11 55002434 55002573 -66841283 + B1_Mur1 SINE Alu 2 144 -5 9 1004 587 298 151 29 chr11 55002573 55002867 -66840989 - L1MA6 LINE L1 -162 6138 5790 8 1004 261 0 0 0 chr11 55002871 55002900 -66840956 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1004 251 268 47 47 chr11 55003126 55003212 -66840644 - MIRb SINE MIR -99 169 84 1 1004 378 0 0 0 chr11 55003425 55003467 -66840389 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1004 680 322 33 33 chr11 55003494 55003767 -66840089 - B4A SINE B4 -6 286 14 1 1004 688 236 28 85 chr11 55004120 55004296 -66839560 - B3 SINE B2 -1 194 29 1 1004 211 299 0 69 chr11 55004239 55004311 -66839545 - RSINE1 SINE B4 -79 86 20 1 1004 893 97 8 0 chr11 55004408 55004542 -66839314 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 1 1004 2561 199 57 19 chr11 55004542 55005136 -66838720 - Lx6 LINE L1 -3 7457 6841 1 1004 262 303 143 42 chr11 55005908 55006125 -66837731 - LTR73 LTR ERV1 -57 515 277 1 1004 3583 38 50 50 chr11 55006136 55006611 -66837245 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1004 529 200 35 112 chr11 55006987 55007156 -66836700 + RSINE1 SINE B4 10 165 0 2 1004 459 125 0 0 chr11 55007156 55007228 -66836628 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1004 234 241 35 0 chr11 55007228 55007286 -66836570 - RLTR22_Mur LTR ERVK -481 1367 1308 2 1004 406 239 261 0 chr11 55007682 55007858 -66835998 - ID_B1 SINE B4 -2 222 1 2 1004 534 162 0 0 chr11 55008636 55008753 -66835103 + (CA)n Simple_repeat Simple_repeat 2 118 0 2 1004 650 260 52 42 chr11 55009541 55009591 -66834265 - B3 SINE B2 -1 215 166 2 1004 1032 144 0 0 chr11 55009591 55009822 -66834034 + (TG)n Simple_repeat Simple_repeat 1 231 0 2 1004 722 222 33 7 chr11 55009822 55009981 -66833875 - B3A SINE B2 -51 165 1 2 1004 251 266 35 41 chr11 55010002 55010147 -66833709 - Lx8 LINE L1 -2 7471 7328 2 1004 425 178 118 27 chr11 55010172 55010282 -66833574 - Lx8 LINE L1 -333 7140 7021 2 1004 198 0 0 0 chr11 55011791 55011813 -66832043 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1004 195 100 0 0 chr11 55012000 55012030 -66831826 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1004 705 242 7 0 chr11 55012035 55012184 -66831672 - B3A SINE B2 -48 150 1 3 1004 358 288 195 10 chr11 55012219 55012419 -66831437 - MLT1D LTR MaLR -6 499 263 3 1004 432 324 82 11 chr11 55012443 55012627 -66831229 - MLT1D LTR MaLR -304 201 5 3 1004 482 241 37 22 chr11 55012630 55012683 -66831173 - RCHARR1 DNA MER1_type -2 972 923 3 1004 189 0 0 0 chr11 55012683 55012704 -66831152 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1004 482 241 37 22 chr11 55012704 55012786 -66831070 - RCHARR1 DNA MER1_type -52 922 836 3 1004 872 160 15 0 chr11 55012797 55012928 -66830928 + B1_Mur3 SINE Alu 3 135 -14 3 1004 203 176 0 0 chr11 55012928 55012962 -66830894 + (CAA)n Simple_repeat Simple_repeat 1 34 0 3 1004 540 247 61 56 chr11 55012967 55013147 -66830709 - RCHARR1 DNA MER1_type -315 659 479 3 1004 627 305 24 10 chr11 55013150 55013355 -66830501 - B3 SINE B2 -7 209 2 3 1004 1041 275 189 5 chr11 55013363 55013721 -66830135 - RCHARR1 DNA MER1_type -485 489 67 3 1004 513 0 0 0 chr11 55013721 55013778 -66830078 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1004 1041 275 189 5 chr11 55013778 55013832 -66830024 - RCHARR1 DNA MER1_type -908 66 3 3 1004 585 0 0 0 chr11 55014381 55014446 -66829410 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 3 1004 720 177 0 0 chr11 55014447 55014588 -66829268 + CT-rich Low_complexity Low_complexity 2 142 0 3 1004 432 0 0 0 chr11 55014660 55014708 -66829148 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1004 189 0 0 0 chr11 55014708 55014728 -66829128 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1004 1259 200 4 26 chr11 55014894 55015120 -66828736 + B4 SINE B4 3 223 -69 4 1004 239 0 32 0 chr11 55015123 55015154 -66828702 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1004 526 142 8 38 chr11 55016322 55016454 -66827402 + (TATG)n Simple_repeat Simple_repeat 4 131 0 4 1004 409 184 6 41 chr11 55016521 55016691 -66827165 + (TATG)n Simple_repeat Simple_repeat 1 164 0 4 1004 242 221 14 14 chr11 55016700 55016769 -66827087 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1004 297 211 30 15 chr11 55016781 55016916 -66826940 + (TATG)n Simple_repeat Simple_repeat 4 140 0 4 1004 338 188 61 0 chr11 55016950 55017115 -66826741 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1004 782 274 40 73 chr11 55017125 55017400 -66826456 - B4A SINE B4 -3 289 24 4 1004 357 311 112 15 chr11 55017409 55017543 -66826313 - B1_Mus2 SINE Alu 0 147 1 5 1004 653 36 0 12 chr11 55018493 55018578 -66825278 + (TTTCC)n Simple_repeat Simple_repeat 2 85 0 5 1004 213 39 0 0 chr11 55018578 55018604 -66825252 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1004 230 352 158 39 chr11 55019492 55019752 -66824104 + L3 LINE CR1 4155 4445 -44 5 1004 261 284 0 0 chr11 55019778 55019845 -66824011 + CT-rich Low_complexity Low_complexity 2 68 0 5 1004 347 194 60 0 chr11 55019988 55020055 -66823801 - B4 SINE B4 -218 74 4 5 1004 1157 205 248 56 chr11 55020616 55020967 -66822889 - MTD LTR MaLR 0 419 2 5 1004 1257 188 73 115 chr11 55020914 55021227 -66822629 + MT2A LTR ERVL 1 300 -233 5 1004 261 0 0 0 chr11 55021251 55021280 -66822576 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1004 192 246 188 0 chr11 55021447 55021516 -66822340 - MIRb SINE MIR -10 258 177 5 1004 211 239 14 56 chr11 55022148 55022219 -66821637 + B3A SINE B2 2 69 -129 6 1004 236 333 13 13 chr11 55022183 55022259 -66821597 - B1F1 SINE Alu -72 77 2 6 1004 297 231 104 19 chr11 55022506 55022612 -66821244 + PB1D7 SINE Alu 5 119 -1 6 1004 670 251 138 17 chr11 55023411 55023639 -66820217 - ID_B1 SINE B4 -25 267 15 6 1004 290 347 80 46 chr11 55023642 55023817 -66820039 - L3 LINE CR1 -137 4352 4172 6 1004 299 276 108 113 chr11 55023824 55023837 -66820019 - MT2B LTR ERVL -355 246 177 6 1004 449 156 0 0 chr11 55023837 55023901 -66819955 - B1_Mur3 SINE Alu -85 64 1 6 1004 547 243 9 0 chr11 55023909 55024016 -66819840 - PB1D10 SINE Alu -7 110 3 6 1004 397 294 18 0 chr11 55023924 55024033 -66819823 - ID_B1 SINE B4 -48 176 66 6 1004 299 276 108 113 chr11 55024016 55024028 -66819828 - MT2B LTR ERVL -355 135 44 6 1004 265 270 77 144 chr11 55024558 55024766 -66819090 + MLT1A1 LTR MaLR 11 204 -204 6 1004 277 268 107 24 chr11 55024870 55024954 -66818902 + MLT1A1 LTR MaLR 318 408 0 6 1004 291 292 36 132 chr11 55026097 55026263 -66817593 - LTR48 LTR ERV1 -637 150 1 7 1004 888 291 88 42 chr11 55026425 55026799 -66817057 - MTE2a LTR MaLR -17 402 22 7 1004 193 269 56 56 chr11 55027048 55027119 -66816737 - L2b LINE L2 -185 3190 3120 7 1004 845 188 99 47 chr11 55029665 55029877 -66813979 + ID_B1 SINE B4 2 224 0 7 1004 412 228 78 137 chr11 55029971 55030190 -66813666 + Charlie1a DNA MER1_type 443 648 -807 7 1004 349 307 103 19 chr11 55030484 55030640 -66813216 + Charlie1a DNA MER1_type 1017 1185 -270 7 1004 992 201 0 22 chr11 55030659 55030842 -66813014 + B3A SINE B2 4 182 -16 7 1004 580 250 40 34 chr11 55030880 55031029 -66812827 + B3 SINE B2 37 186 -30 7 1004 550 275 69 0 chr11 55032085 55032216 -66811640 - B1_Mus2 SINE Alu -2 145 6 7 1004 311 208 13 89 chr11 55032145 55032224 -66811632 - MT2B2 LTR ERVL -351 233 161 7 1004 555 315 86 5 chr11 55033505 55033703 -66810153 + B4A SINE B4 78 291 -1 7 1004 231 294 15 0 chr11 55034086 55034154 -66809702 + MIR3 SINE MIR 117 185 -23 8 1004 211 208 42 0 chr11 55034596 55034644 -66809212 + CT-rich Low_complexity Low_complexity 3 52 0 8 1004 1540 204 130 23 chr11 55035728 55036159 -66807697 - RLTR11A LTR ERVK -38 490 14 8 1004 241 304 108 97 chr11 55037873 55038059 -66805797 - B2_Mm2 SINE B2 -1 194 7 8 1004 310 316 53 0 chr11 55038663 55038777 -66805079 + ID_B1 SINE B4 94 213 -11 8 1004 540 306 88 50 chr11 55039104 55039395 -66804461 - B4A SINE B4 0 292 1 8 1004 303 28 0 0 chr11 55040457 55040493 -66803363 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 8 1004 1193 82 0 6 chr11 55040973 55041145 -66802711 + (TTCC)n Simple_repeat Simple_repeat 3 173 0 8 1004 414 246 57 41 chr11 55041156 55041279 -66802577 - ID_B1 SINE B4 -2 222 98 8 1004 585 0 0 0 chr11 55041453 55041518 -66802338 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1004 690 207 167 38 chr11 55042113 55042299 -66801557 + ID_B1 SINE B4 2 211 -13 9 1004 270 240 15 8 chr11 55042300 55042430 -66801426 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 9 1004 312 290 160 0 chr11 55042540 55042578 -66801278 + ID SINE ID 28 86 -138 9 1004 331 260 50 10 chr11 55042578 55042679 -66801177 + PB1D10 SINE Alu 3 107 -10 9 1004 299 233 96 0 chr11 55043332 55043405 -66800451 - ID_B1 SINE B4 -64 160 81 9 1004 1005 55 0 0 chr11 55044465 55044593 -66799263 + (TAGA)n Simple_repeat Simple_repeat 4 131 0 9 1004 553 247 191 0 chr11 55044610 55044772 -66799084 - B3 SINE B2 -23 193 1 9 1004 891 245 5 54 chr11 55044793 55044996 -66798860 - B3A SINE B2 -5 193 1 9 1004 430 259 62 48 chr11 55045487 55045633 -66798223 + PB1D10 SINE Alu 1 148 -1 9 1004 188 239 22 0 chr11 55045731 55045777 -66798079 + L3b LINE CR1 426 472 -10 9 1004 243 79 0 0 chr11 55046388 55046426 -66797430 + (C)n Simple_repeat Simple_repeat 1 38 0 1 1004 493 326 14 28 chr11 55046988 55047133 -66796723 - ID_B1 SINE B4 0 224 82 1 1004 432 0 0 0 chr11 55047566 55047614 -66796242 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 125 438 283 129 16 chr11 55050049 55050243 -66793613 + MLT2C1 LTR ERVL 91 306 -91 1 1005 342 0 0 0 chr11 55050282 55050320 -66793536 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1005 267 31 0 0 chr11 55050320 55050351 -66793505 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1005 456 19 0 0 chr11 55050351 55050403 -66793453 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1005 1212 132 5 5 chr11 55051040 55051230 -66792626 + URR1B DNA MER1_type 35 224 -1 1 1005 1381 86 21 5 chr11 55051353 55051540 -66792316 + B2_Mm2 SINE B2 1 190 -5 1 1005 679 290 89 15 chr11 55051625 55051828 -66792028 - B4A SINE B4 -67 225 8 1 1005 764 149 16 0 chr11 55052286 55052407 -66791449 - B1_Mur4 SINE Alu 0 150 28 1 1005 444 326 14 0 chr11 55052653 55052791 -66791065 + MER2B DNA MER2_type 171 310 -26 1 1005 288 0 0 0 chr11 55053499 55053531 -66790325 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1005 273 314 64 110 chr11 55053954 55054172 -66789684 + MIRb SINE MIR 48 255 -13 1 1005 3203 14 5 8 chr11 55054428 55054796 -66789060 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1005 49813 19 11 0 chr11 55054796 55061164 -66782692 - IAPEz-int LTR ERVK 0 6481 8 1 1005 3203 14 5 8 chr11 55061164 55061532 -66782324 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1005 377 291 0 0 chr11 55061640 55061726 -66782130 + ID_B1 SINE B4 134 219 -5 1 1005 450 263 0 0 chr11 55061781 55061876 -66781980 + MTEa LTR MaLR 9 103 -276 1 1005 378 234 32 0 chr11 55061996 55062090 -66781766 + L1MC LINE L1 4857 4953 -1193 1 1005 408 223 122 190 chr11 55062172 55062239 -66781617 + MTEa LTR MaLR 12 82 -297 1 1005 591 15 0 0 chr11 55062239 55062307 -66781549 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 1 1005 1351 85 17 6 chr11 55062308 55062486 -66781370 - B2_Mm2 SINE B2 -15 180 1 1 1005 408 223 122 190 chr11 55062486 55062621 -66781235 + MTEa LTR MaLR 83 202 -177 1 1005 300 307 163 0 chr11 55062765 55062918 -66780938 + L1MC1 LINE L1 6107 6284 -49 1 1005 802 228 77 24 chr11 55062943 55063150 -66780706 + ID_B1 SINE B4 2 219 -5 1 1005 702 219 23 0 chr11 55063503 55063631 -66780225 + RSINE1 SINE B4 2 132 -33 1 1005 329 263 155 19 chr11 55063649 55063723 -66780133 - HAL1-2a_MD LINE L1 -557 2467 2385 1 1005 1047 141 0 0 chr11 55063723 55063872 -66779984 - B1_Mur3 SINE Alu 0 149 1 1 1005 329 263 155 19 chr11 55063872 55063952 -66779904 - HAL1-2a_MD LINE L1 -640 2384 2292 1 1005 22 56 0 0 chr11 55064116 55064152 -66779704 + AT_rich Low_complexity Low_complexity 1 36 0 1 1005 217 274 48 0 chr11 55066440 55066502 -66777354 + MIR SINE MIR 61 125 -83 1 1005 932 205 78 16 chr11 55067540 55067733 -66776123 - B3 SINE B2 -11 205 1 1 1005 306 0 0 0 chr11 55067783 55067817 -66776039 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1005 229 220 102 0 chr11 55068220 55068279 -66775577 + MIR3 SINE MIR 93 157 -51 1 1005 936 91 0 0 chr11 55068288 55068420 -66775436 + (TCCCC)n Simple_repeat Simple_repeat 5 136 0 1 1005 246 95 0 0 chr11 55068556 55068598 -66775258 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1005 611 291 82 23 chr11 55068643 55068900 -66774956 - B4A SINE B4 -18 274 3 1 1005 383 219 14 0 chr11 55068902 55068975 -66774881 - ID_B1 SINE B4 -68 156 83 1 1005 193 262 81 16 chr11 55069005 55069067 -66774789 + MER5A DNA MER1_type 36 101 -88 1 1005 588 286 86 6 chr11 55070545 55070707 -66773149 - ID_B1 SINE B4 -49 175 1 1 1005 247 325 67 42 chr11 55070719 55070838 -66773018 - MIR SINE MIR -31 231 110 1 1005 548 264 46 46 chr11 55070851 55071002 -66772854 + B4 SINE B4 142 292 0 1 1005 216 259 0 0 chr11 55071087 55071145 -66772711 + B1F SINE Alu 92 149 0 1 1005 403 315 0 27 chr11 55071910 55072057 -66771799 + CT-rich Low_complexity Low_complexity 1 143 0 1 1005 190 81 26 26 chr11 55072068 55072106 -66771750 + (TCTCCC)n Simple_repeat Simple_repeat 1 38 0 1 1005 234 274 16 0 chr11 55072116 55072178 -66771678 - ID4 SINE ID -17 66 4 1 1005 541 320 194 48 chr11 55072196 55072985 -66770871 + L2 LINE L2 2116 3019 -400 1 1005 856 188 178 5 chr11 55073097 55073305 -66770551 + MTEa LTR MaLR 1 239 -140 1 1005 288 0 0 0 chr11 55073634 55073666 -66770190 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1005 204 309 37 9 chr11 55074957 55075065 -66768791 - MIRb SINE MIR -26 242 132 1 1005 398 183 142 80 chr11 55077246 55077359 -66766497 + B3A SINE B2 2 121 -77 1 1005 310 243 147 18 chr11 55077473 55077582 -66766274 + MLT1A0 LTR MaLR 29 151 -214 1 1005 440 256 22 0 chr11 55077594 55077684 -66766172 - PB1D10 SINE Alu -7 110 19 1 1005 527 269 20 20 chr11 55077692 55077840 -66766016 - B1F SINE Alu -1 148 1 1 1005 627 224 0 0 chr11 55078518 55078841 -66765015 + (CA)n Simple_repeat Simple_repeat 1 323 0 1 1005 765 190 0 0 chr11 55078854 55079033 -66764823 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1005 619 190 0 22 chr11 55079044 55079227 -66764629 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1005 192 77 0 0 chr11 55079911 55079937 -66763919 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1005 330 26 0 0 chr11 55079937 55079976 -66763880 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1005 635 152 25 33 chr11 55080025 55080147 -66763709 - RMER4A LTR ERVK 0 466 346 1 1005 299 156 62 49 chr11 55080182 55080263 -66763593 - RMER4A LTR ERVK -75 391 310 1 1005 2126 138 124 12 chr11 55080266 55080685 -66763171 - RMER4A LTR ERVK 0 466 1 1 1005 245 306 261 20 chr11 55082102 55082355 -66761501 - L2b LINE L2 -150 3237 2923 1 1005 1143 264 24 21 chr11 55084207 55084497 -66759359 + B4 SINE B4 2 292 0 1 1005 387 105 0 0 chr11 55084670 55084727 -66759129 + (CAT)n Simple_repeat Simple_repeat 2 58 0 1 1005 373 303 121 91 chr11 55084896 55085194 -66758662 + MLT1A0 LTR MaLR 1 307 -58 1 1005 1129 245 46 42 chr11 55085240 55085525 -66758331 - B4 SINE B4 -2 290 5 1 1005 771 246 164 15 chr11 55085692 55085992 -66757864 + ORR1E LTR MaLR 2 379 0 1 1005 25 31 0 0 chr11 55086129 55086161 -66757695 + AT_rich Low_complexity Low_complexity 1 32 0 1 1005 342 0 0 0 chr11 55087012 55087050 -66756806 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1005 242 162 59 0 chr11 55087105 55087173 -66756683 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1005 638 245 14 14 chr11 55087219 55087364 -66756492 + B1_Mur2 SINE Alu 5 149 0 1 1005 336 350 50 0 chr11 55087390 55087510 -66756346 + L1MC LINE L1 5679 5804 -2078 1 1005 708 302 72 148 chr11 55087518 55087949 -66755907 + MTD LTR MaLR 20 417 -2 1 1005 459 209 172 9 chr11 55089139 55089255 -66754601 - B1F SINE Alu -1 148 14 1 1005 232 306 129 30 chr11 55089811 55089824 -66754032 + B1F SINE Alu 11 121 -28 1 1005 277 282 102 34 chr11 55089824 55089912 -66753944 + ID_B1 SINE B4 106 199 -25 1 1005 210 71 0 0 chr11 55089921 55089949 -66753907 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1005 488 285 12 54 chr11 55089991 55090158 -66753698 + RSINE1 SINE B4 6 165 0 1 1005 633 260 19 31 chr11 55090204 55090363 -66753493 + B4A SINE B4 2 158 -134 1 1005 232 219 24 110 chr11 55090296 55090378 -66753478 + B1_Mus1 SINE Alu 13 87 -61 1 1005 331 247 19 106 chr11 55090404 55090508 -66753348 + B4A SINE B4 179 273 -19 1 1005 348 43 0 0 chr11 55090508 55090554 -66753302 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1005 1006 133 21 7 chr11 55091707 55091851 -66752005 - B1_Mur3 SINE Alu -2 147 2 1 1005 506 276 30 61 chr11 55091975 55092106 -66751750 - RSINE1 SINE B4 -4 161 35 1 1005 1299 272 55 16 chr11 55093390 55093753 -66750103 + MTEa LTR MaLR 1 377 -2 1 1005 1814 180 80 17 chr11 55093891 55094252 -66749604 + ORR1C2 LTR MaLR 1 384 0 1 1005 180 214 211 18 chr11 55097323 55097380 -66746476 - L3 LINE CR1 -3719 770 703 1 1005 353 287 96 24 chr11 55099857 55099982 -66743874 + MER103 DNA DNA 2 135 -31 1 1005 1236 92 49 0 chr11 55099999 55100184 -66743672 + B2_Mm2 SINE B2 2 195 0 1 1005 207 0 0 0 chr11 55100184 55100207 -66743649 + (GAAA)n Simple_repeat Simple_repeat 1 23 0 1 1005 298 362 145 0 chr11 55100326 55100478 -66743378 + MER96 DNA hAT 1 174 -1 1 1005 201 269 19 0 chr11 55100479 55100531 -66743325 + MIR3 SINE MIR 153 205 -3 1 1005 1423 196 110 59 chr11 55100784 55101121 -66742735 + ORR1E LTR MaLR 4 357 -2 1 1005 727 206 30 0 chr11 55101622 55101753 -66742103 - B1_Mus1 SINE Alu -13 135 1 1 1005 405 0 0 0 chr11 55101764 55101809 -66742047 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1005 438 205 128 43 chr11 55101810 55101924 -66741932 + B1F SINE Alu 8 131 -18 1 1005 1375 231 37 109 chr11 55101924 55102327 -66741529 + MTE2a LTR MaLR 1 374 -5 1 1005 361 265 98 89 chr11 55103194 55103436 -66740420 + ORR1E LTR MaLR 3 274 -96 1 1005 661 235 72 43 chr11 55103752 55103961 -66739895 + B3 SINE B2 2 216 0 1 1005 21 0 0 0 chr11 55104097 55104118 -66739738 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 249 108 0 0 chr11 55104952 55104989 -66738867 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1005 1504 236 52 14 chr11 55105798 55106142 -66737714 + ORR1E LTR MaLR 1 357 -2 1 1005 380 208 13 25 chr11 55106495 55106574 -66737282 + MTE2b LTR MaLR 288 365 -14 1 1005 261 267 0 85 chr11 55107326 55107408 -66736448 + ID4 SINE ID 1 75 -8 1 1005 762 284 23 12 chr11 55107408 55107579 -66736277 + B3A SINE B2 1 173 -25 1 1005 677 256 0 8 chr11 55107636 55107770 -66736086 + B1_Mur1 SINE Alu 11 143 -6 1 1005 1167 184 14 0 chr11 55108192 55108399 -66735457 + B3 SINE B2 1 210 -6 1 1005 1183 62 7 0 chr11 55108432 55108578 -66735278 + B1_Mus1 SINE Alu 2 148 0 2 1005 628 85 28 19 chr11 55108578 55108686 -66735170 + (GAAAA)n Simple_repeat Simple_repeat 4 112 0 2 1005 807 235 68 29 chr11 55108697 55108903 -66734953 + B4 SINE B4 1 214 -78 2 1005 207 0 0 0 chr11 55108992 55109015 -66734841 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1005 582 75 0 0 chr11 55109015 55109094 -66734762 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1005 417 70 0 0 chr11 55109227 55109284 -66734572 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 2 1005 189 229 0 0 chr11 55109285 55109333 -66734523 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1005 958 85 5 38 chr11 55109333 55109517 -66734339 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 1005 321 197 45 0 chr11 55110295 55110361 -66733495 + ID2 SINE ID 1 69 -14 2 1005 1300 96 116 0 chr11 55110398 55110596 -66733260 - URR1B DNA MER1_type 0 225 5 2 1005 297 240 0 0 chr11 55110703 55110778 -66733078 + CT-rich Low_complexity Low_complexity 1 75 0 2 1005 1013 113 0 6 chr11 55110770 55110914 -66732942 + (TTC)n Simple_repeat Simple_repeat 3 146 0 2 1005 1200 67 0 27 chr11 55110914 55111097 -66732759 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1005 1013 113 0 6 chr11 55111097 55111112 -66732744 + (TTC)n Simple_repeat Simple_repeat 3 17 0 2 1005 564 15 0 0 chr11 55111112 55111177 -66732679 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1005 364 225 83 98 chr11 55111251 55111384 -66732472 - ID_B1 SINE B4 0 224 94 2 1005 459 0 0 0 chr11 55111737 55111788 -66732068 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1005 261 241 0 18 chr11 55112400 55112455 -66731401 - PB1D7 SINE Alu -65 55 2 2 1005 210 314 74 95 chr11 55112968 55113116 -66730740 - MIR SINE MIR -6 256 112 2 1005 352 263 110 110 chr11 55113197 55113351 -66730505 - ID_B1 SINE B4 -7 217 64 2 1005 539 307 136 32 chr11 55113344 55113623 -66730233 + MLT1A LTR MaLR 65 372 -2 2 1005 206 260 0 74 chr11 55113956 55114010 -66729846 + L2c LINE L2 3292 3341 -46 2 1005 219 319 29 14 chr11 55114085 55114155 -66729701 - L2a LINE L2 0 3426 3356 2 1005 260 227 54 108 chr11 55114327 55114356 -66729500 + RLTR25B LTR ERVK 373 393 -635 2 1005 672 172 10 5 chr11 55114356 55114485 -66729371 + B1_Mur1 SINE Alu 1 128 -21 2 1005 387 278 67 34 chr11 55114485 55114504 -66729352 + B4 SINE B4 86 238 -54 2 1005 2854 181 9 22 chr11 55114600 55115137 -66728719 + RMER5 LTR ERV1 5 534 0 2 1005 182 264 26 53 chr11 55115620 55115696 -66728160 + L3 LINE CR1 2371 2444 -2045 2 1005 408 360 19 15 chr11 55115926 55116160 -66727696 - MER102a DNA MER1_type -34 296 91 2 1005 1319 251 98 76 chr11 55116354 55116764 -66727092 + MTD LTR MaLR 1 419 0 2 1005 470 301 85 6 chr11 55116928 55117092 -66726764 - MER5A DNA MER1_type -12 177 1 2 1005 934 259 88 53 chr11 55117523 55117819 -66726037 + B4A SINE B4 2 292 0 2 1005 247 245 0 0 chr11 55117831 55117880 -66725976 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1005 331 179 73 22 chr11 55117882 55118019 -66725837 + RMER17A LTR ERVK 333 476 -275 2 1005 208 259 33 49 chr11 55118581 55118642 -66725214 - MIR SINE MIR -71 137 78 2 1005 310 254 54 85 chr11 55118644 55118773 -66725083 + MT2B LTR ERVL 154 278 -323 2 1005 708 168 17 0 chr11 55118663 55118782 -66725074 + B1_Mur4 SINE Alu 14 134 -16 2 1005 263 146 18 0 chr11 55118786 55118841 -66725015 + GA-rich Low_complexity Low_complexity 2 57 0 2 1005 4273 205 65 34 chr11 55118927 55119487 -66724369 + Lx9 LINE L1 4660 5214 -633 2 1005 281 26 26 0 chr11 55119487 55119525 -66724331 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 2 1005 7716 211 59 31 chr11 55119525 55121803 -66722053 + Lx9 LINE L1 5215 7622 -22 2 1005 1414 71 22 0 chr11 55121803 55121987 -66721869 + B2_Mm2 SINE B2 1 188 -7 2 1005 7716 214 57 30 chr11 55121987 55122008 -66721848 + Lx9 LINE L1 7623 7644 0 2 1005 1464 84 16 0 chr11 55122011 55122202 -66721654 + B2_Mm2 SINE B2 1 194 -1 2 1005 306 0 0 0 chr11 55122259 55122293 -66721563 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1005 350 307 99 7 chr11 55126299 55126440 -66717416 + MIR SINE MIR 8 161 -101 2 1005 913 218 11 14 chr11 55126443 55126656 -66717200 + B3A SINE B2 1 215 -1 2 1005 728 177 8 0 chr11 55126720 55126844 -66717012 + ID_B1 SINE B4 100 224 0 2 1005 189 0 0 0 chr11 55129016 55129037 -66714819 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 2 1005 718 228 40 55 chr11 55129041 55129241 -66714615 + B3A SINE B2 1 197 -1 2 1005 23 0 0 0 chr11 55130041 55130064 -66713792 + AT_rich Low_complexity Low_complexity 1 23 0 2 1005 228 67 0 0 chr11 55130234 55130264 -66713592 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2 1005 183 100 0 0 chr11 55130272 55130302 -66713554 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1005 1254 196 4 35 chr11 55130451 55130679 -66713177 - ID_B1 SINE B4 -2 222 2 2 1005 781 260 70 7 chr11 55131893 55132191 -66711665 - L1MA4A LINE L1 -373 5930 5614 2 1005 441 243 48 52 chr11 55132196 55132376 -66711480 + L1M2 LINE L1 4889 5065 -815 2 1005 395 276 0 10 chr11 55132443 55132526 -66711330 + RSINE1 SINE B4 66 148 -17 2 1005 342 0 0 0 chr11 55132526 55132564 -66711292 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1005 395 276 0 10 chr11 55132564 55132579 -66711277 + RSINE1 SINE B4 149 163 -2 2 1005 233 29 0 29 chr11 55133129 55133164 -66710692 + (TCTCTG)n Simple_repeat Simple_repeat 1 34 0 2 1005 270 73 0 0 chr11 55133164 55133205 -66710651 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1005 328 316 82 12 chr11 55133205 55133375 -66710481 - HAL1-3A_ME LINE L1 -414 2444 2263 2 1005 234 259 126 23 chr11 55133638 55133725 -66710131 + MIRc SINE MIR 90 185 -83 2 1005 334 238 2 35 chr11 55133894 55133979 -66709877 + ID_B1 SINE B4 8 93 -199 2 1005 966 267 14 0 chr11 55134079 55134300 -66709556 - ID_B1 SINE B4 0 224 1 2 1005 274 292 35 74 chr11 55134800 55135003 -66708853 - L2a LINE L2 -259 3167 2973 2 1005 1010 269 74 4 chr11 55135130 55135399 -66708457 + B4 SINE B4 5 292 0 2 1005 758 49 0 10 chr11 55135410 55135514 -66708342 + (CA)n Simple_repeat Simple_repeat 1 103 0 2 1005 1017 126 21 0 chr11 55135538 55135681 -66708175 + B1_Mur4 SINE Alu 5 150 0 2 1005 22 0 0 0 chr11 55135681 55135703 -66708153 + AT_rich Low_complexity Low_complexity 1 22 0 2 1005 378 0 0 0 chr11 55135787 55135829 -66708027 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1005 241 341 98 35 chr11 55135847 55135990 -66707866 + MER102b DNA MER1_type 81 232 -109 2 1005 397 250 0 52 chr11 55136102 55136199 -66707657 + 5S rRNA rRNA 14 105 -16 2 1005 516 208 10 0 chr11 55136674 55136770 -66707086 - PB1D9 SINE Alu -5 115 19 2 1005 493 202 35 60 chr11 55136861 55136977 -66706879 + ID_B1 SINE B4 109 221 -3 2 1005 189 171 0 0 chr11 55136992 55137027 -66706829 + GA-rich Low_complexity Low_complexity 3 37 0 2 1005 252 77 0 0 chr11 55137028 55137067 -66706789 + (CAGG)n Simple_repeat Simple_repeat 2 40 0 2 1005 780 154 6 11 chr11 55137068 55137245 -66706611 + GA-rich Low_complexity Low_complexity 4 179 0 2 1005 1383 178 131 3 chr11 55137445 55137766 -66706090 + L1M2 LINE L1 5456 5817 -474 2 1005 509 257 26 0 chr11 55137777 55137890 -66705966 + RSINE1 SINE B4 2 117 -48 2 1005 443 339 40 35 chr11 55138050 55138249 -66705607 + Lx9 LINE L1 7257 7456 -188 2 1005 288 0 0 0 chr11 55138249 55138281 -66705575 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1005 325 377 48 42 chr11 55138281 55138420 -66705436 + Lx8 LINE L1 7328 7466 -7 2 1005 422 310 127 19 chr11 55138446 55138706 -66705150 + L1MA8 LINE L1 5814 6101 -190 2 1005 537 179 14 134 chr11 55138706 55138848 -66705008 + PB1 SINE Alu 1 125 -2 2 1005 276 283 0 0 chr11 55138870 55138930 -66704926 + ID4 SINE ID 11 70 -13 2 1005 258 319 0 0 chr11 55138871 55138940 -66704916 + tRNA-Ala-GCY_ tRNA tRNA 6 74 -1 2 1005 234 242 50 4 chr11 55138955 55139051 -66704805 + L1MA8 LINE L1 6104 6205 -86 2 1005 236 338 26 13 chr11 55139061 55139139 -66704717 + ID4 SINE ID 2 80 -3 2 1005 570 15 0 0 chr11 55139162 55139229 -66704627 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1005 741 305 81 15 chr11 55139238 55139511 -66704345 + B4A SINE B4 2 292 0 2 1005 294 29 0 0 chr11 55140064 55140099 -66703757 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1005 195 284 8 39 chr11 55140308 55140436 -66703420 + GA-rich Low_complexity Low_complexity 3 126 0 2 1005 185 0 0 39 chr11 55140602 55140628 -66703228 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 2 1005 691 193 25 0 chr11 55141245 55141364 -66702492 + RSINE1 SINE B4 3 124 -41 2 1005 249 33 0 0 chr11 55141364 55141394 -66702462 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1005 439 333 23 0 chr11 55142018 55142147 -66701709 + MER5A DNA MER1_type 58 189 0 2 1005 522 114 0 0 chr11 55142825 55142904 -66700952 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1005 270 248 157 28 chr11 55142922 55143138 -66700718 + L1ME3A LINE L1 5922 6165 -8 2 1005 521 240 144 0 chr11 55144770 55144895 -66698961 + RSINE1 SINE B4 2 144 -21 2 1005 279 0 0 0 chr11 55144904 55144935 -66698921 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1005 521 224 0 18 chr11 55145142 55145251 -66698605 + PB1D10 SINE Alu 3 109 -8 2 1005 1018 109 7 7 chr11 55145288 55145427 -66698429 + B1_Mur3 SINE Alu 1 139 -10 2 1005 315 0 0 0 chr11 55145427 55145462 -66698394 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1005 712 167 41 16 chr11 55145473 55145595 -66698261 + B1F SINE Alu 14 138 -11 2 1005 344 255 11 11 chr11 55146362 55146457 -66697399 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1005 226 209 242 56 chr11 55146600 55146711 -66697145 + MIR3 SINE MIR 2 124 -144 3 1005 1196 215 56 53 chr11 55147058 55147368 -66696488 + B4 SINE B4 2 290 -2 3 1005 193 29 29 29 chr11 55147435 55147470 -66696386 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1005 253 181 95 126 chr11 55148003 55148098 -66695758 - MIR3 SINE MIR -7 201 110 3 1005 811 245 122 0 chr11 55148310 55148506 -66695350 - ID_B1 SINE B4 0 224 5 3 1005 690 260 0 7 chr11 55148527 55148674 -66695182 + RSINE1 SINE B4 1 146 -19 3 1005 405 0 0 0 chr11 55148690 55148735 -66695121 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1005 227 238 0 0 chr11 55150139 55150181 -66693675 + G-rich Low_complexity Low_complexity 4 45 0 3 1005 231 271 86 0 chr11 55150476 55150546 -66693310 + MIRc SINE MIR 57 132 -136 3 1005 197 184 0 0 chr11 55150593 55150631 -66693225 + MIR SINE MIR 152 189 -73 3 1005 234 304 58 44 chr11 55150636 55150659 -66693197 + B4A SINE B4 80 131 -161 3 1005 479 216 0 40 chr11 55150659 55150760 -66693096 + PB1D7 SINE Alu 12 108 -12 3 1005 234 304 58 44 chr11 55150760 55150808 -66693048 + B4A SINE B4 132 248 -44 3 1005 279 0 0 0 chr11 55150870 55150901 -66692955 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1005 252 0 0 0 chr11 55150901 55150928 -66692928 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1005 470 264 27 9 chr11 55151370 55151383 -66692473 - PB1D10 SINE Alu -2 115 103 3 1005 207 0 0 0 chr11 55151383 55151406 -66692450 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1005 216 0 0 0 chr11 55151406 55151429 -66692427 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1005 470 264 27 9 chr11 55151429 55151525 -66692331 - PB1D10 SINE Alu -15 102 5 3 1005 842 103 0 7 chr11 55151527 55151664 -66692192 + (TCTCCC)n Simple_repeat Simple_repeat 4 139 0 3 1005 225 0 0 0 chr11 55151721 55151746 -66692110 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1005 558 259 53 0 chr11 55151748 55151879 -66691977 - RSINE1 SINE B4 -24 141 4 3 1005 315 234 26 13 chr11 55151893 55151971 -66691885 - ID2 SINE ID -2 81 3 3 1005 1696 211 91 16 chr11 55152130 55152516 -66691340 - MTD LTR MaLR 0 419 5 3 1005 457 344 36 18 chr11 55152827 55153108 -66690748 + B4A SINE B4 1 286 -6 3 1005 211 302 83 16 chr11 55153821 55153935 -66689921 - MIRb SINE MIR -138 130 1 3 1005 243 308 13 13 chr11 55154061 55154140 -66689716 - MER5B DNA MER1_type -1 177 99 3 1005 648 268 6 13 chr11 55154298 55154457 -66689399 - RMER30 DNA MER1_type -29 173 16 3 1005 186 43 0 0 chr11 55154563 55154586 -66689270 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 3 1005 1151 139 165 0 chr11 55154803 55154997 -66688859 - URR1A DNA MER1_type 0 226 1 3 1005 266 260 0 0 chr11 55155030 55155080 -66688776 - MER81 DNA AcHobo -15 99 50 3 1005 533 298 78 41 chr11 55156085 55156354 -66687502 + B4A SINE B4 3 281 -11 3 1005 405 191 0 0 chr11 55156363 55156478 -66687378 + (CA)n Simple_repeat Simple_repeat 1 115 0 3 1005 256 344 126 42 chr11 55156533 55156635 -66687221 - MIRb SINE MIR -48 214 105 3 1005 1886 121 123 27 chr11 55156635 55157008 -66686848 + RMER17C LTR ERVK 2 410 0 3 1005 256 344 126 42 chr11 55157008 55157096 -66686760 - MIRb SINE MIR -157 111 8 3 1005 315 237 26 13 chr11 55157168 55157245 -66686611 - ID4_ SINE ID -5 78 1 3 1005 781 267 39 0 chr11 55157356 55157536 -66686320 - B4A SINE B4 -81 211 25 3 1005 1380 45 62 6 chr11 55157984 55158162 -66685694 - B2_Mm2 SINE B2 -7 188 1 3 1005 703 213 137 71 chr11 55158777 55158974 -66684882 - B4 SINE B4 0 292 83 3 1005 449 94 89 59 chr11 55158979 55159096 -66684760 - Lx9 LINE L1 -1 7643 7518 3 1005 302 24 48 0 chr11 55159096 55159138 -66684718 + (CATA)n Simple_repeat Simple_repeat 3 46 0 3 1005 1995 159 57 34 chr11 55159138 55159362 -66684494 - Lx9 LINE L1 -127 7517 7255 3 1005 4163 102 23 35 chr11 55159362 55159970 -66683886 + MT2B LTR ERVL 1 601 0 3 1005 1995 164 54 32 chr11 55159970 55160154 -66683702 - Lx9 LINE L1 -390 7254 7060 3 1005 269 300 0 0 chr11 55160154 55160214 -66683642 - B4 SINE B4 -197 95 36 3 1005 351 0 0 0 chr11 55160229 55160268 -66683588 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1005 360 0 0 0 chr11 55160268 55160307 -66683549 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1005 608 161 40 20 chr11 55160316 55160627 -66683229 + (TG)n Simple_repeat Simple_repeat 1 317 0 3 1005 272 291 82 63 chr11 55160652 55160713 -66683143 - B2_Mm2 SINE B2 -34 161 1 3 1005 512 115 29 15 chr11 55160713 55160810 -66683046 - B4 SINE B4 -65 100 1 3 1005 311 321 50 31 chr11 55161115 55161276 -66682580 + MIR3 SINE MIR 16 179 -29 3 1005 275 0 29 0 chr11 55161289 55161324 -66682532 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 3 1005 607 164 127 0 chr11 55161331 55161441 -66682415 + B1_Mur1 SINE Alu 19 142 -7 3 1005 201 293 165 41 chr11 55161997 55162118 -66681738 - MER5B DNA MER1_type -35 143 8 3 1005 287 303 40 47 chr11 55162376 55162525 -66681331 + MLT1A0 LTR MaLR 218 365 0 3 1005 181 284 39 39 chr11 55163131 55163208 -66680648 + MIRc SINE MIR 43 119 -149 3 1005 997 223 10 15 chr11 55163622 55163827 -66680029 + ID_B1 SINE B4 4 207 -17 3 1005 734 164 0 17 chr11 55164004 55164122 -66679734 - PB1D9 SINE Alu 0 120 5 3 1005 540 210 0 0 chr11 55164229 55164396 -66679460 + CT-rich Low_complexity Low_complexity 2 168 0 3 1005 590 176 11 0 chr11 55164412 55164588 -66679268 + (TCTG)n Simple_repeat Simple_repeat 2 179 0 3 1005 344 235 12 0 chr11 55164588 55164673 -66679183 + CT-rich Low_complexity Low_complexity 2 87 0 3 1005 211 253 232 0 chr11 55164833 55164928 -66678928 - MIRb SINE MIR -24 244 128 3 1005 207 133 0 0 chr11 55164959 55165004 -66678852 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1005 639 224 134 38 chr11 55165007 55165193 -66678663 - B4 SINE B4 0 292 89 3 1005 501 97 0 0 chr11 55165194 55165266 -66678590 + (CACCAT)n Simple_repeat Simple_repeat 1 72 0 3 1005 337 151 0 0 chr11 55165268 55165321 -66678535 + B1_Mus2 SINE Alu 95 147 0 3 1005 471 302 46 8 chr11 55165379 55165509 -66678347 - RSINE1 SINE B4 -23 142 8 3 1005 322 241 0 24 chr11 55165515 55165600 -66678256 - ID2 SINE ID 0 83 1 3 1005 196 270 132 57 chr11 55165601 55165707 -66678149 - MIRb SINE MIR -151 117 4 3 1005 331 283 130 14 chr11 55165715 55165923 -66677933 - L1MB7 LINE L1 -10 6174 5943 3 1005 490 298 60 4 chr11 55165978 55166244 -66677612 - L1MB7 LINE L1 -1185 4961 4681 3 1005 447 342 0 24 chr11 55166246 55166369 -66677487 + ID_B1 SINE B4 84 203 -21 3 1005 441 0 0 0 chr11 55166369 55166418 -66677438 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1005 198 0 0 0 chr11 55166418 55166440 -66677416 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1005 342 0 0 0 chr11 55166443 55166481 -66677375 + (CCA)n Simple_repeat Simple_repeat 1 38 0 3 1005 256 24 49 0 chr11 55166481 55166522 -66677334 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3 1005 771 177 55 34 chr11 55166541 55166687 -66677169 + B1_Mur1 SINE Alu 1 149 0 3 1005 308 189 14 42 chr11 55166706 55166778 -66677078 - L1MB7 LINE L1 -1456 4690 4621 3 1005 876 273 142 19 chr11 55166887 55167260 -66676596 - MTD LTR MaLR 0 419 1 3 1005 214 242 15 29 chr11 55167261 55167329 -66676527 + CT-rich Low_complexity Low_complexity 2 68 0 3 1005 723 244 6 10 chr11 55167906 55168059 -66675797 + ID_B1 SINE B4 80 225 -67 3 1005 746 241 19 86 chr11 55168070 55168279 -66675577 + B3A SINE B2 4 198 0 3 1005 225 116 23 0 chr11 55168842 55168885 -66674971 - L1M2 LINE L1 -376 5936 5893 3 1005 24 67 0 0 chr11 55168924 55168969 -66674887 + AT_rich Low_complexity Low_complexity 1 45 0 3 1005 603 245 7 26 chr11 55168993 55169144 -66674712 + B1F1 SINE Alu 1 148 -1 3 1005 458 271 147 55 chr11 55169145 55169418 -66674438 - Charlie5 DNA MER1_type -68 2556 2259 3 1005 768 175 27 27 chr11 55169454 55169601 -66674255 + B1_Mus2 SINE Alu 1 147 0 3 1005 864 57 218 98 chr11 55169604 55169778 -66674078 + B2_Mm2 SINE B2 1 195 0 3 1005 188 67 33 0 chr11 55169778 55169808 -66674048 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 3 1005 696 209 180 6 chr11 55169831 55170014 -66673842 + ID_B1 SINE B4 2 216 -8 3 1005 201 74 0 0 chr11 55170024 55170051 -66673805 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1005 298 383 0 9 chr11 55170051 55170167 -66673689 - Charlie5 DNA MER1_type -2503 121 7 3 1005 206 385 44 37 chr11 55170311 55170446 -66673410 - MIRb SINE MIR -101 167 32 3 1005 659 241 15 0 chr11 55170972 55171109 -66672747 + RSINE1 SINE B4 2 140 -25 3 1005 229 125 0 59 chr11 55171126 55171177 -66672679 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 1005 333 0 0 0 chr11 55171398 55171435 -66672421 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1005 768 22 0 0 chr11 55171435 55171524 -66672332 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 1005 495 0 0 0 chr11 55172751 55172806 -66671050 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1005 778 228 129 5 chr11 55173015 55173209 -66670647 - ID_B1 SINE B4 -6 218 1 3 1005 418 290 113 33 chr11 55173385 55173535 -66670321 + MLT1A1 LTR MaLR 247 408 0 3 1005 232 157 28 14 chr11 55174053 55174124 -66669732 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 3 1005 925 172 0 0 chr11 55174134 55174279 -66669577 - B1_Mus2 SINE Alu -1 146 2 3 1005 1180 114 22 11 chr11 55174314 55174492 -66669364 + B2_Mm2 SINE B2 2 181 -14 3 1005 303 119 10 25 chr11 55174558 55174662 -66669194 + B2_Mm2 SINE B2 47 192 -3 3 1005 3001 123 40 36 chr11 55174681 55175178 -66668678 - RLTR19 LTR ERVK 0 499 1 3 1005 356 318 115 16 chr11 55175283 55175475 -66668381 - MLT1J LTR MaLR -196 316 106 3 1005 697 179 96 15 chr11 55175958 55176094 -66667762 - B1_Mur3 SINE Alu -1 148 2 3 1005 821 178 15 0 chr11 55176099 55176234 -66667622 - B1_Mur1 SINE Alu 0 149 13 3 1005 383 293 68 8 chr11 55176131 55176248 -66667608 - B4 SINE B4 -88 204 81 3 1005 315 341 70 29 chr11 55176541 55176713 -66667143 - MLT1K LTR MaLR -306 289 111 3 1005 516 81 0 0 chr11 55176817 55176891 -66666965 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1005 818 293 84 0 chr11 55176891 55176938 -66666918 - B4A SINE B4 -22 270 222 4 1005 639 39 0 0 chr11 55176938 55177016 -66666840 + (TTAG)n Simple_repeat Simple_repeat 3 80 0 4 1005 818 293 84 0 chr11 55177016 55177217 -66666639 - B4A SINE B4 -71 221 3 4 1005 268 308 66 0 chr11 55177719 55177810 -66666046 - MIRb SINE MIR -145 123 27 4 1005 325 250 101 34 chr11 55178096 55178245 -66665611 + MIR3 SINE MIR 38 196 -12 4 1005 291 202 0 31 chr11 55179285 55179382 -66664474 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1005 967 259 70 23 chr11 55179382 55179639 -66664217 - B4A SINE B4 0 292 24 4 1005 725 257 70 11 chr11 55180691 55180876 -66662980 - ID_B1 SINE B4 -21 203 8 4 1006 300 53 0 0 chr11 55181771 55181809 -66662047 + (TTTC)n Simple_repeat Simple_repeat 4 41 0 4 1006 307 294 138 14 chr11 55182185 55182323 -66661533 + HAL1-3A_ME LINE L1 2284 2438 -420 4 1006 198 180 16 32 chr11 55182326 55182389 -66661467 + GA-rich Low_complexity Low_complexity 1 62 0 4 1006 184 394 46 30 chr11 55182512 55182643 -66661213 - MIRc SINE MIR -51 217 85 4 1006 350 299 58 22 chr11 55182924 55182935 -66660921 + ID SINE ID 79 89 -135 4 1006 568 146 80 18 chr11 55182935 55183047 -66660809 + PB1D7 SINE Alu 1 119 -1 4 1006 350 299 58 22 chr11 55183047 55183172 -66660684 + ID_B1 SINE B4 90 219 -5 4 1006 592 211 88 16 chr11 55183052 55183177 -66660679 + B1_Mur1 SINE Alu 15 148 -1 4 1006 504 240 78 7 chr11 55183175 55183315 -66660541 + ID_B1 SINE B4 72 222 -70 4 1006 1415 57 23 0 chr11 55183375 55183552 -66660304 + B2_Mm2 SINE B2 1 181 -14 4 1006 401 88 27 0 chr11 55183565 55183628 -66660228 + B2_Mm2 SINE B2 47 114 -102 4 1006 33 25 0 0 chr11 55183641 55183681 -66660175 + AT_rich Low_complexity Low_complexity 1 40 0 4 1006 577 269 117 22 chr11 55184020 55184199 -66659657 - ID_B1 SINE B4 -6 218 23 4 1006 290 225 12 0 chr11 55184260 55184340 -66659516 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 1006 530 237 37 68 chr11 55184610 55184748 -66659108 + RSINE1 SINE B4 1 136 -29 4 1006 225 190 69 0 chr11 55184750 55184808 -66659048 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 4 1006 270 0 0 0 chr11 55184820 55184850 -66659006 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1006 486 0 0 0 chr11 55184850 55184903 -66658953 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1006 568 113 40 40 chr11 55186437 55186538 -66657318 + B1_Mur4 SINE Alu 50 150 0 4 1006 314 221 44 0 chr11 55186540 55186608 -66657248 + L1MEg LINE L1 1882 1952 -4132 4 1006 209 182 0 0 chr11 55186609 55186642 -66657214 + polypurine Low_complexity Low_complexity 2 34 0 4 1006 540 212 105 8 chr11 55186650 55186783 -66657073 + ID_B1 SINE B4 79 224 0 4 1006 191 289 12 0 chr11 55186786 55186869 -66656987 + GA-rich Low_complexity Low_complexity 2 85 0 4 1006 588 239 37 0 chr11 55186870 55187004 -66656852 + RSINE1 SINE B4 8 146 -19 4 1006 454 354 69 0 chr11 55187173 55187348 -66656508 - MIR SINE MIR -74 188 2 4 1006 225 191 87 14 chr11 55187437 55187506 -66656350 + LTR58 LTR ERV1 464 537 -142 4 1006 739 258 13 0 chr11 55187529 55187680 -66656176 - B3A SINE B2 -28 170 18 4 1006 1183 85 0 17 chr11 55187684 55187864 -66655992 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 4 1006 882 123 72 0 chr11 55188015 55188153 -66655703 - B1_Mur4 SINE Alu 0 150 3 4 1006 438 243 39 10 chr11 55188164 55188268 -66655588 - PB1D10 SINE Alu -2 115 9 4 1006 256 237 120 21 chr11 55188288 55188399 -66655457 - MIRc SINE MIR -38 170 54 4 1006 489 216 9 29 chr11 55188560 55188665 -66655191 - PB1D10 SINE Alu -2 115 13 4 1006 329 237 225 50 chr11 55188665 55188680 -66655176 - ID_B1 SINE B4 -2 222 82 4 1006 182 226 57 114 chr11 55188989 55189059 -66654797 + MIR3 SINE MIR 119 184 -24 4 1006 866 124 15 8 chr11 55189293 55189423 -66654433 + B1_Mur3 SINE Alu 2 132 -17 4 1006 588 121 0 0 chr11 55189428 55189519 -66654337 + (GGGA)n Simple_repeat Simple_repeat 2 92 0 4 1006 302 261 29 0 chr11 55189665 55189734 -66654122 + ID4 SINE ID 5 75 -8 4 1006 1149 243 102 14 chr11 55190664 55190948 -66652908 + MTEa LTR MaLR 71 379 0 4 1006 800 223 94 25 chr11 55191220 55191422 -66652434 - MTD LTR MaLR -1 418 203 4 1006 483 48 0 0 chr11 55191422 55191484 -66652372 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 1006 607 209 89 44 chr11 55192348 55192483 -66651373 + ID_B1 SINE B4 83 223 -1 4 1006 300 111 0 0 chr11 55192766 55192811 -66651045 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1006 192 97 0 0 chr11 55192864 55192895 -66650961 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1006 387 118 0 0 chr11 55192936 55193012 -66650844 + (TC)n Simple_repeat Simple_repeat 2 77 0 4 1006 450 0 0 0 chr11 55193012 55193062 -66650794 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1006 471 217 30 104 chr11 55193301 55193491 -66650365 - MTEa LTR MaLR -35 349 153 4 1006 551 92 270 14 chr11 55193793 55193919 -66649937 + B2_Mm2 SINE B2 1 158 -37 4 1006 369 0 0 0 chr11 55193922 55193963 -66649893 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 1006 543 273 25 43 chr11 55193996 55194157 -66649699 + RSINE1 SINE B4 6 163 -2 4 1006 313 295 99 42 chr11 55194001 55194192 -66649664 + B3 SINE B2 10 211 -5 4 1006 323 294 9 38 chr11 55194295 55194328 -66649528 + ID SINE ID 52 81 -143 4 1006 399 238 18 14 chr11 55194328 55194423 -66649433 + PB1D10 SINE Alu 1 97 -52 4 1006 285 260 13 13 chr11 55194441 55194519 -66649337 - ID4 SINE ID -4 79 2 4 1006 892 231 12 0 chr11 55194687 55194856 -66649000 - ORR1D2 LTR MaLR -101 269 99 4 1006 500 259 65 0 chr11 55195744 55195883 -66647973 - B1F1 SINE Alu -1 148 1 4 1006 969 230 18 41 chr11 55195883 55196042 -66647814 - ID SINE ID -138 86 3 4 1006 216 361 0 126 chr11 55196143 55196238 -66647618 + B3A SINE B2 86 168 -30 4 1006 23 0 0 0 chr11 55196328 55196351 -66647505 + AT_rich Low_complexity Low_complexity 1 23 0 4 1006 1278 47 0 0 chr11 55196396 55196544 -66647312 + B1_Mus1 SINE Alu 1 148 0 4 1006 781 270 5 36 chr11 55196565 55196757 -66647099 + B3 SINE B2 28 213 -3 4 1006 21 0 0 0 chr11 55196757 55196778 -66647078 + AT_rich Low_complexity Low_complexity 1 21 0 4 1006 451 318 87 47 chr11 55197648 55197902 -66645954 + B4A SINE B4 29 292 0 4 1006 227 331 78 16 chr11 55198019 55198148 -66645708 + L1M5 LINE L1 5526 5662 -462 4 1006 686 199 8 8 chr11 55198340 55198467 -66645389 + B1F SINE Alu 3 129 -20 4 1006 795 232 111 0 chr11 55198474 55198672 -66645184 + ID_B1 SINE B4 2 221 -3 4 1006 1234 49 0 0 chr11 55198680 55198824 -66645032 + B1_Mus2 SINE Alu 2 145 -2 4 1006 726 12 0 0 chr11 55198824 55198907 -66644949 + (GAA)n Simple_repeat Simple_repeat 2 84 0 4 1006 534 217 66 0 chr11 55198907 55199013 -66644843 + RSINE1 SINE B4 12 124 -41 4 1006 180 0 0 0 chr11 55199013 55199033 -66644823 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1006 333 68 0 0 chr11 55199147 55199191 -66644665 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 4 1006 282 133 515 9 chr11 55199205 55199304 -66644552 - B2_Mm2 SINE B2 0 195 47 4 1006 1237 119 6 11 chr11 55199350 55199529 -66644327 - B2_Mm1t SINE B2 -14 179 2 4 1006 326 287 89 0 chr11 55200409 55200510 -66643346 - RMER15 LTR ERVL 0 575 466 4 1006 349 279 79 26 chr11 55200532 55200646 -66643210 - RMER15 LTR ERVL -183 392 273 4 1006 590 180 0 0 chr11 55200688 55200798 -66643058 - RMER21A LTR ERV1 0 947 733 4 1006 4294 140 78 105 chr11 55200808 55201748 -66642108 - RMER21A LTR ERV1 -6 941 28 4 1006 1606 213 99 12 chr11 55201815 55202049 -66641807 - MTE2a LTR MaLR -2 377 119 4 1006 2145 167 61 32 chr11 55202049 55202458 -66641398 - MTC LTR MaLR 0 421 1 4 1006 1606 213 99 12 chr11 55202458 55202565 -66641291 - MTE2a LTR MaLR -261 118 6 4 1006 321 174 145 0 chr11 55202564 55202633 -66641223 - PB1D10 SINE Alu -15 102 24 4 1006 180 0 0 0 chr11 55202678 55202698 -66641158 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 1006 220 376 12 0 chr11 55203307 55203392 -66640464 + MIR3 SINE MIR 86 171 -37 4 1006 228 184 0 0 chr11 55203896 55203945 -66639911 + (TGG)n Simple_repeat Simple_repeat 2 50 0 4 1006 240 196 0 21 chr11 55204069 55204116 -66639740 + GA-rich Low_complexity Low_complexity 1 46 0 4 1006 378 0 0 0 chr11 55204460 55204502 -66639354 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1006 700 340 14 10 chr11 55204506 55204539 -66639317 - ID_B1 SINE B4 -4 220 188 4 1006 2064 173 104 10 chr11 55204539 55204924 -66638932 - MTC LTR MaLR 0 421 1 4 1006 700 340 14 10 chr11 55204924 55205098 -66638758 - ID_B1 SINE B4 -37 187 12 4 1006 546 246 54 23 chr11 55205193 55205322 -66638534 - B1F1 SINE Alu 0 149 17 4 1006 1339 159 27 5 chr11 55205343 55205564 -66638292 + URR1A DNA MER1_type 1 226 0 4 1006 251 28 0 27 chr11 55205571 55205608 -66638248 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1006 1262 54 0 0 chr11 55205618 55205766 -66638090 - B1_Mus1 SINE Alu 0 148 1 4 1006 2707 146 53 6 chr11 55205766 55206241 -66637615 - RLTR16 LTR ERVK -3 502 6 4 1006 1454 88 10 0 chr11 55206798 55206991 -66636865 - B2_Mm2 SINE B2 0 195 1 4 1006 297 0 0 0 chr11 55207170 55207203 -66636653 + (TAA)n Simple_repeat Simple_repeat 1 33 0 4 1006 429 20 0 0 chr11 55207270 55207320 -66636536 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1006 553 286 30 0 chr11 55207320 55207453 -66636403 - B1_Mur2 SINE Alu -12 137 1 5 1006 351 0 0 0 chr11 55207550 55207589 -66636267 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1006 934 246 20 0 chr11 55207606 55207805 -66636051 - ID_B1 SINE B4 -20 204 2 5 1006 198 228 129 68 chr11 55209515 55209647 -66634209 + MIRm SINE MIR 19 158 -118 5 1006 506 137 11 0 chr11 55209783 55209857 -66633999 + (TTTTC)n Simple_repeat Simple_repeat 5 78 0 5 1006 1395 14 0 33 chr11 55209857 55210228 -66633628 + (TTCCC)n Simple_repeat Simple_repeat 1 358 0 5 1006 506 137 11 0 chr11 55210228 55210243 -66633613 + (TTTTC)n Simple_repeat Simple_repeat 5 19 0 5 1006 784 162 66 7 chr11 55210244 55210381 -66633475 - B1_Mus1 SINE Alu -2 146 2 5 1006 414 250 0 118 chr11 55210279 55210406 -66633450 - MT2B LTR ERVL -344 257 146 5 1006 513 233 23 108 chr11 55210455 55210585 -66633271 + ZP3AR Satellite Satellite 30 148 -64 5 1006 226 206 99 99 chr11 55210585 55210666 -66633190 + ID4 SINE ID 1 81 -2 5 1006 469 286 62 101 chr11 55210666 55210737 -66633119 + ZP3AR Satellite Satellite 96 174 -38 5 1006 183 196 39 19 chr11 55210811 55210863 -66632993 - L3 LINE CR1 -3173 1316 1264 5 1006 1089 136 0 0 chr11 55214135 55214312 -66629544 + (TA)n Simple_repeat Simple_repeat 1 177 0 5 1006 333 0 0 0 chr11 55214312 55214349 -66629507 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1006 1043 291 0 0 chr11 55214367 55214590 -66629266 - B4 SINE B4 0 292 70 5 1006 1977 124 34 96 chr11 55214627 55215064 -66628792 + RMER17C LTR ERVK 1 410 0 5 1006 251 288 0 59 chr11 55215327 55215412 -66628444 - MIRc SINE MIR -123 145 66 5 1006 993 154 0 0 chr11 55215947 55216096 -66627760 + B1_Mur3 SINE Alu 1 149 0 5 1006 214 62 14 86 chr11 55216096 55216166 -66627690 + A-rich Low_complexity Low_complexity 1 65 0 5 1006 241 161 32 16 chr11 55216221 55216284 -66627572 + GA-rich Low_complexity Low_complexity 2 65 0 5 1006 260 393 48 0 chr11 55216321 55216466 -66627390 + MER68 LTR ERVL 115 266 -297 5 1006 346 349 23 8 chr11 55216555 55216688 -66627168 - B1F SINE Alu -5 144 10 5 1006 371 245 10 96 chr11 55217190 55217202 -66626654 + MT2B LTR ERVL 153 247 -354 5 1006 637 163 0 0 chr11 55217202 55217294 -66626562 + B1_Mus1 SINE Alu 2 93 -55 5 1006 565 236 6 6 chr11 55217439 55217614 -66626242 + (TGGG)n Simple_repeat Simple_repeat 3 177 0 5 1006 195 254 0 0 chr11 55217618 55217681 -66626175 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 5 1006 225 294 11 11 chr11 55217693 55217786 -66626070 + (TGGA)n Simple_repeat Simple_repeat 3 95 0 5 1006 290 363 26 33 chr11 55217874 55218025 -66625831 - MIRb SINE MIR -85 183 34 5 1006 622 270 33 0 chr11 55218065 55218217 -66625639 + RSINE1 SINE B4 3 159 -6 5 1006 1165 88 6 0 chr11 55218457 55218617 -66625239 - B2_Mm2 SINE B2 -32 163 3 5 1006 281 215 61 37 chr11 55219391 55219473 -66624383 - B2_Mm1t SINE B2 -100 93 10 5 1006 382 200 14 14 chr11 55219403 55219474 -66624382 - B4A SINE B4 -213 79 9 5 1006 194 0 39 0 chr11 55220687 55220713 -66623143 + (CCA)n Simple_repeat Simple_repeat 3 29 0 5 1006 291 298 164 0 chr11 55220996 55221100 -66622756 - RSINE1 SINE B4 -11 154 34 5 1006 422 286 38 0 chr11 55221252 55221357 -66622499 - PB1D10 SINE Alu -8 109 1 5 1006 2312 104 0 55 chr11 55221461 55221806 -66622050 + ORR1A3 LTR MaLR 1 326 0 5 1006 198 227 0 22 chr11 55221816 55221861 -66621995 - MIR SINE MIR -60 148 105 5 1006 258 198 134 62 chr11 55222147 55222244 -66621612 + PB1D9 SINE Alu 1 104 -16 5 1006 1257 111 10 16 chr11 55222749 55222942 -66620914 - B2_Mm1t SINE B2 0 193 2 5 1006 854 160 170 12 chr11 55222946 55223117 -66620739 - B3 SINE B2 0 216 19 5 1006 1089 232 5 19 chr11 55223127 55223342 -66620514 - ID_B1 SINE B4 -5 219 8 5 1006 237 287 126 126 chr11 55223595 55223834 -66620022 + MER113 DNA MER1_type 148 386 -135 5 1006 204 175 0 45 chr11 55223996 55224062 -66619794 + CT-rich Low_complexity Low_complexity 2 64 0 5 1006 203 294 141 60 chr11 55224433 55224632 -66619224 - L3 LINE CR1 -192 4297 4083 5 1006 289 316 0 0 chr11 55225030 55225109 -66618747 + ID4_ SINE ID 2 80 -3 5 1006 291 273 31 59 chr11 55226100 55226248 -66617608 - MIRc SINE MIR -54 214 74 5 1006 623 228 28 35 chr11 55226809 55226950 -66616906 - ID_B1 SINE B4 -17 207 68 5 1006 382 299 0 0 chr11 55226961 55227038 -66616818 - PB1D10 SINE Alu -11 106 30 5 1006 1067 256 26 15 chr11 55227200 55227470 -66616386 + B4 SINE B4 2 274 -18 5 1006 396 71 0 0 chr11 55227472 55227528 -66616328 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1006 270 73 0 0 chr11 55227528 55227569 -66616287 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1006 409 327 59 13 chr11 55228177 55228329 -66615527 - MER117 DNA MER1_type 0 197 39 5 1006 237 33 0 0 chr11 55229159 55229189 -66614667 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1006 831 61 0 0 chr11 55229189 55229302 -66614554 + (GA)n Simple_repeat Simple_repeat 1 114 0 5 1006 223 205 0 0 chr11 55229462 55229501 -66614355 + B2_Mm2 SINE B2 4 42 -153 5 1006 1262 41 0 0 chr11 55229501 55229647 -66614209 + B1_Mm SINE Alu 2 147 0 5 1006 584 304 23 35 chr11 55229666 55229840 -66614016 + B3A SINE B2 27 198 0 5 1006 889 122 78 14 chr11 55229864 55230005 -66613851 - B1_Mur4 SINE Alu 0 150 1 5 1006 29 28 0 0 chr11 55230006 55230042 -66613814 + AT_rich Low_complexity Low_complexity 1 36 0 5 1006 206 162 27 0 chr11 55230069 55230106 -66613750 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1006 326 198 15 6 chr11 55230505 55230590 -66613266 - MIRc SINE MIR -39 169 86 5 1006 459 52 0 0 chr11 55230623 55230681 -66613175 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 5 1006 451 70 14 14 chr11 55230682 55230755 -66613101 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1006 690 297 117 52 chr11 55230755 55230798 -66613058 - B4A SINE B4 -23 269 230 5 1006 695 236 0 7 chr11 55230798 55230943 -66612913 - B1_Mur1 SINE Alu -1 148 5 5 1006 690 297 117 52 chr11 55230943 55231148 -66612708 - B4A SINE B4 -63 229 5 5 1006 302 0 26 0 chr11 55233296 55233334 -66610522 + (CAGG)n Simple_repeat Simple_repeat 1 39 0 5 1006 234 250 0 0 chr11 55233451 55233503 -66610353 + CT-rich Low_complexity Low_complexity 2 53 0 5 1006 713 254 25 129 chr11 55234126 55234366 -66609490 - ID_B1 SINE B4 -8 216 2 5 1006 1049 60 0 0 chr11 55234369 55234502 -66609354 - B2_Mm2 SINE B2 -62 133 1 5 1006 248 266 61 26 chr11 55234987 55235100 -66608756 + L2b LINE L2 3079 3202 -185 5 1006 235 288 0 63 chr11 55235344 55235407 -66608449 + Charlie4z DNA MER1_type 85 143 -24 5 1006 447 272 17 34 chr11 55235791 55235909 -66607947 + RSINE1 SINE B4 4 119 -46 5 1006 315 0 0 0 chr11 55236417 55236452 -66607404 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1006 679 272 0 13 chr11 55236452 55236601 -66607255 - B3A SINE B2 -50 148 2 5 1006 398 272 0 0 chr11 55236761 55236842 -66607014 - ID SINE ID -141 83 3 5 1006 513 0 0 0 chr11 55236890 55236947 -66606909 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 5 1006 1183 71 0 0 chr11 55236949 55237090 -66606766 - B1_Mus1 SINE Alu -6 142 2 5 1006 320 338 125 17 chr11 55237803 55238035 -66605821 + MIRb SINE MIR 1 257 -11 5 1006 376 302 15 85 chr11 55238085 55238215 -66605641 - B3A SINE B2 -50 148 28 5 1006 444 256 102 16 chr11 55238233 55238360 -66605496 + ID_B1 SINE B4 1 138 -86 5 1006 272 317 43 118 chr11 55239033 55239194 -66604662 + Charlie15a DNA MER1_type 67 215 -9 5 1006 821 209 52 4 chr11 55239194 55239355 -66604501 + B3A SINE B2 1 163 -35 5 1006 351 0 0 0 chr11 55239355 55239394 -66604462 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1006 425 259 53 117 chr11 55239394 55239420 -66604436 + B2_Mm2 SINE B2 155 176 -19 5 1006 533 256 47 0 chr11 55239426 55239555 -66604301 + B1F SINE Alu 2 136 -13 5 1006 231 257 11 99 chr11 55239898 55240001 -66603855 - B1_Mur1 SINE Alu -1 148 25 5 1006 535 316 15 0 chr11 55240145 55240281 -66603575 - RSINE1 SINE B4 -21 144 7 5 1006 230 263 117 25 chr11 55240294 55240413 -66603443 + MIR SINE MIR 19 153 -55 5 1006 558 203 12 164 chr11 55240599 55240673 -66603183 - B1_Mur1 SINE Alu -3 146 76 5 1006 1901 51 4 4 chr11 55240673 55240910 -66602946 + L1_Mus1 LINE L1 6331 6567 0 5 1006 1005 55 0 0 chr11 55240917 55241045 -66602811 + (GGAGAA)n Simple_repeat Simple_repeat 5 132 0 5 1006 558 203 12 164 chr11 55241045 55241127 -66602729 - B1_Mur1 SINE Alu -74 75 7 5 1006 886 88 14 7 chr11 55241150 55241288 -66602568 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 5 1006 1408 68 6 0 chr11 55241288 55241464 -66602392 - B2_Mm1t SINE B2 -16 177 1 5 1006 298 284 0 0 chr11 55241485 55241552 -66602304 - ID2 SINE ID -14 69 3 5 1006 231 204 0 0 chr11 55241575 55241624 -66602232 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 5 1006 594 313 46 39 chr11 55242350 55242656 -66601200 + LTR37B LTR ERV1 70 377 -91 5 1006 244 120 40 0 chr11 55242656 55242706 -66601150 + CT-rich Low_complexity Low_complexity 3 54 0 5 1006 210 143 0 0 chr11 55242714 55242749 -66601107 + (TAA)n Simple_repeat Simple_repeat 1 35 0 5 1006 491 252 0 125 chr11 55242750 55242802 -66601054 - ID_B1 SINE B4 -7 217 170 5 1006 1157 88 0 0 chr11 55242802 55242949 -66600907 - B1_Mus2 SINE Alu 0 147 1 5 1006 491 252 0 125 chr11 55242949 55243032 -66600824 - ID_B1 SINE B4 -55 169 99 5 1006 384 287 32 0 chr11 55242955 55243049 -66600807 - PB1D7 SINE Alu -23 97 1 5 1006 273 57 0 0 chr11 55243093 55243128 -66600728 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1006 351 150 0 0 chr11 55243284 55243344 -66600512 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1006 494 188 0 0 chr11 55243468 55243548 -66600308 - BC1_Mm scRNA scRNA -72 80 1 6 1006 205 286 129 35 chr11 55244081 55244197 -66599659 + L2a LINE L2 3183 3309 -117 6 1006 1466 204 158 3 chr11 55244292 55244622 -66599234 - MTD LTR MaLR 0 419 39 6 1006 243 205 19 71 chr11 55244647 55244746 -66599110 + B1_Mur2 SINE Alu 40 132 -17 6 1006 1210 55 7 0 chr11 55244780 55244926 -66598930 + B1_Mus1 SINE Alu 2 148 0 6 1006 846 66 0 0 chr11 55244983 55245089 -66598767 + B2_Mm2 SINE B2 2 107 -88 6 1006 917 243 9 18 chr11 55245155 55245373 -66598483 - B3 SINE B2 0 216 1 6 1006 1151 99 66 0 chr11 55245389 55245425 -66598431 - B2_Mm2 SINE B2 -1 194 149 6 1006 243 0 0 0 chr11 55245425 55245452 -66598404 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1006 1151 99 66 0 chr11 55245452 55245597 -66598259 - B2_Mm2 SINE B2 -47 148 2 6 1006 345 24 0 0 chr11 55245634 55245676 -66598180 + (CAA)n Simple_repeat Simple_repeat 1 42 0 6 1006 933 250 39 0 chr11 55245684 55245892 -66597964 + B3 SINE B2 1 216 0 6 1006 551 82 0 0 chr11 55245953 55246026 -66597830 + B2_Mm1t SINE B2 88 160 -33 6 1006 207 0 0 0 chr11 55246026 55246049 -66597807 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1006 1183 56 0 7 chr11 55246119 55246263 -66597593 + B1_Mus2 SINE Alu 2 144 -3 6 1006 367 212 0 0 chr11 55246442 55246508 -66597348 - ID_B1 SINE B4 -54 170 105 6 1006 469 280 0 0 chr11 55247035 55247128 -66596728 + PB1D10 SINE Alu 17 109 -8 6 1006 513 310 12 43 chr11 55247128 55247290 -66596566 + RSINE1 SINE B4 3 159 -6 6 1006 237 62 0 59 chr11 55247336 55247387 -66596469 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 6 1006 1122 76 7 14 chr11 55247396 55247543 -66596313 - B1_Mm SINE Alu -1 146 1 6 1006 437 288 64 53 chr11 55247813 55248000 -66595856 - B2_Mm2 SINE B2 -6 189 1 6 1006 1124 227 22 0 chr11 55248142 55248365 -66595491 + B4A SINE B4 2 229 -63 6 1006 661 197 88 0 chr11 55248365 55248502 -66595354 + B1_Mur1 SINE Alu 1 149 0 6 1006 229 276 12 106 chr11 55248745 55248830 -66595026 + B4A SINE B4 216 292 0 6 1006 262 262 175 0 chr11 55249034 55249114 -66594742 - PB1D10 SINE Alu -21 96 3 6 1006 392 331 6 123 chr11 55249114 55249214 -66594642 - ID SINE ID -141 83 3 6 1006 411 73 0 0 chr11 55250117 55250172 -66593684 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 6 1006 335 227 83 111 chr11 55250214 55250358 -66593498 - ID_B1 SINE B4 -2 222 83 6 1006 295 156 0 0 chr11 55250764 55250809 -66593047 + B2_Mm2 SINE B2 1 45 -150 6 1006 956 9 9 0 chr11 55250818 55250933 -66592923 - B1_Mus1 SINE Alu 0 148 33 6 1006 1059 212 11 0 chr11 55250926 55251110 -66592746 + B3 SINE B2 30 215 -1 6 1006 218 195 0 0 chr11 55251110 55251151 -66592705 + GA-rich Low_complexity Low_complexity 1 41 0 6 1006 569 226 68 17 chr11 55251191 55251308 -66592548 - ID_B1 SINE B4 -10 214 92 6 1006 243 298 0 35 chr11 55252015 55252102 -66591754 - Charlie15a DNA MER1_type -10 214 131 6 1006 752 211 7 20 chr11 55252554 55252704 -66591152 - B1_Mur1 SINE Alu 0 149 2 6 1006 708 81 297 0 chr11 55252776 55252887 -66590969 + B1_Mus1 SINE Alu 4 147 -1 6 1006 357 125 0 0 chr11 55252889 55252945 -66590911 + (A)n Simple_repeat Simple_repeat 1 56 0 6 1006 21 36 0 0 chr11 55253005 55253033 -66590823 + AT_rich Low_complexity Low_complexity 1 28 0 6 1006 1644 186 74 90 chr11 55253059 55253449 -66590407 - RLTR41 LTR ERV1 -1 445 62 6 1006 606 258 55 30 chr11 55253473 55253637 -66590219 - B3A SINE B2 -30 168 1 6 1006 463 241 26 18 chr11 55253640 55253754 -66590102 - PB1D10 SINE Alu -1 116 2 6 1006 305 256 0 60 chr11 55253754 55253836 -66590020 - B4 SINE B4 -62 230 154 6 1006 713 157 0 50 chr11 55254023 55254144 -66589712 + B1_Mur3 SINE Alu 22 136 -13 6 1006 1211 68 0 0 chr11 55254193 55254340 -66589516 + B1_Mus2 SINE Alu 1 147 0 6 1006 186 43 0 0 chr11 55254340 55254363 -66589493 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1006 258 318 24 0 chr11 55254498 55254583 -66589273 + L1MD3 LINE L1 7572 7658 -337 6 1006 294 326 12 0 chr11 55254624 55254710 -66589146 + PB1D10 SINE Alu 20 106 -11 6 1006 626 250 101 0 chr11 55254751 55254823 -66589033 + ID_B1 SINE B4 9 95 -129 6 1006 321 253 187 0 chr11 55254823 55254914 -66588942 + PB1D10 SINE Alu 1 108 -9 6 1006 621 229 92 0 chr11 55255592 55255723 -66588133 + ID_B1 SINE B4 71 213 -11 6 1006 226 220 60 0 chr11 55255681 55255731 -66588125 + PB1D7 SINE Alu 65 117 -3 6 1006 236 360 23 0 chr11 55256240 55256326 -66587530 + RMER15 LTR ERVL 372 459 -116 6 1006 423 38 0 0 chr11 55256330 55256383 -66587473 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1006 461 174 92 0 chr11 55256746 55256844 -66587012 + B2_Mm2 SINE B2 89 195 0 6 1006 559 264 129 136 chr11 55256846 55256942 -66586914 + B4A SINE B4 1 84 -208 6 1006 1192 55 7 7 chr11 55256942 55257090 -66586766 + B1_Mus1 SINE Alu 1 148 0 6 1006 559 264 129 136 chr11 55257090 55257273 -66586583 + B4A SINE B4 85 278 -14 6 1006 238 214 0 67 chr11 55257315 55257375 -66586481 + ID4 SINE ID 3 58 -25 6 1006 684 250 21 14 chr11 55257540 55257582 -66586274 + ID SINE ID 39 81 -143 6 1006 382 252 80 45 chr11 55257582 55257694 -66586162 + PB1D10 SINE Alu 1 116 -1 6 1006 692 216 32 0 chr11 55257696 55257821 -66586035 + B3A SINE B2 1 129 -69 6 1006 866 104 0 0 chr11 55257962 55258077 -66585779 - B1_Mus2 SINE Alu -8 139 25 6 1006 352 283 43 26 chr11 55258185 55258301 -66585555 + B4A SINE B4 139 256 -36 6 1006 422 298 69 46 chr11 55258924 55259054 -66584802 + B3A SINE B2 50 182 -16 6 1006 463 202 76 9 chr11 55259060 55259165 -66584691 + PB1D9 SINE Alu 8 119 -1 6 1006 225 0 0 0 chr11 55259429 55259454 -66584402 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1006 712 194 52 0 chr11 55259478 55259612 -66584244 + B1_Mur3 SINE Alu 9 149 0 6 1006 228 246 168 18 chr11 55259925 55260053 -66583803 - MIRm SINE MIR -9 199 59 6 1006 384 209 58 0 chr11 55260531 55260617 -66583239 + ID_B1 SINE B4 80 170 -54 6 1006 21 36 0 0 chr11 55260624 55260652 -66583204 + AT_rich Low_complexity Low_complexity 1 28 0 6 1006 448 203 44 89 chr11 55260652 55260787 -66583069 + B1_Mur4 SINE Alu 1 129 -21 6 1006 872 109 79 14 chr11 55261111 55261124 -66582732 - B1_Mur4 SINE Alu -1 149 138 6 1006 189 0 0 0 chr11 55261124 55261145 -66582711 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 6 1006 872 109 79 14 chr11 55261145 55261271 -66582585 - B1_Mur4 SINE Alu -13 137 1 6 1006 1326 97 22 0 chr11 55261286 55261471 -66582385 + B2_Mm1t SINE B2 1 189 -4 6 1006 500 292 59 33 chr11 55261482 55261634 -66582222 - RSINE1 SINE B4 -9 156 1 6 1006 3207 53 0 0 chr11 55261780 55262173 -66581683 + L1Md_F2 LINE L1 6190 6582 0 6 1006 658 264 43 7 chr11 55262574 55262715 -66581141 - RSINE1 SINE B4 0 165 20 6 1006 331 241 0 24 chr11 55262737 55262822 -66581034 - PB1D7 SINE Alu -7 113 31 6 1006 257 267 53 0 chr11 55264299 55264374 -66579482 - ID4_ SINE ID -4 79 1 6 1006 401 259 191 0 chr11 55264560 55264707 -66579149 - B3A SINE B2 -19 179 5 6 1006 635 209 158 47 chr11 55264719 55264890 -66578966 - B3 SINE B2 -7 209 20 6 1006 240 333 18 6 chr11 55264992 55265158 -66578698 + (TG)n Simple_repeat Simple_repeat 1 168 0 6 1006 528 223 138 0 chr11 55265158 55265288 -66578568 - RSINE1 SINE B4 0 165 18 6 1006 369 0 0 0 chr11 55265397 55265438 -66578418 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1006 237 273 0 0 chr11 55265445 55265500 -66578356 - ID4_ SINE ID -24 59 5 6 1006 1230 34 0 7 chr11 55265570 55265717 -66578139 + B1_Mm SINE Alu 2 147 0 6 1006 191 32 65 0 chr11 55265719 55265750 -66578106 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1006 856 135 55 28 chr11 55265869 55266014 -66577842 - B1_Mur3 SINE Alu 0 149 1 6 1006 1790 149 55 12 chr11 55266498 55266823 -66577033 - MTD LTR MaLR 0 419 81 6 1006 474 227 41 0 chr11 55266838 55266935 -66576921 - B3 SINE B2 -112 104 4 6 1006 630 255 0 20 chr11 55267088 55267240 -66576616 + B1F SINE Alu 1 149 0 6 1006 202 175 158 0 chr11 55267275 55267332 -66576524 + MIR SINE MIR 72 137 -71 6 1006 520 231 0 27 chr11 55267435 55267546 -66576310 - PB1D7 SINE Alu -12 108 1 6 1006 240 398 0 0 chr11 55267576 55267659 -66576197 - ID4_ SINE ID 0 83 1 6 1006 404 200 211 0 chr11 55267667 55267762 -66576094 - PB1D10 SINE Alu -2 115 1 6 1006 567 235 151 0 chr11 55268055 55268174 -66575682 + B1F2 SINE Alu 6 142 -7 6 1006 395 288 80 36 chr11 55268174 55268192 -66575664 + B4A SINE B4 91 233 -59 6 1006 333 266 112 56 chr11 55269423 55269602 -66574254 + MLT1F LTR MaLR 1 189 -359 6 1006 1038 118 147 21 chr11 55269604 55269795 -66574061 - URR1A DNA MER1_type -11 215 1 6 1006 340 192 82 100 chr11 55269795 55269904 -66573952 + MLT1F LTR MaLR 198 304 -244 6 1006 350 246 0 0 chr11 55270155 55270220 -66573636 + ID4_ SINE ID 5 69 -14 6 1006 191 61 30 0 chr11 55270365 55270398 -66573458 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1006 495 218 45 18 chr11 55270464 55270576 -66573280 - B1F SINE Alu -3 146 32 7 1006 318 228 138 12 chr11 55270844 55270924 -66572932 - B1_Mur1 SINE Alu -34 115 26 7 1006 237 62 0 0 chr11 55270932 55270964 -66572892 + B1_Mus1 SINE Alu 25 56 -92 7 1006 567 286 11 40 chr11 55270996 55271171 -66572685 - B3 SINE B2 0 216 47 7 1006 755 227 0 86 chr11 55271195 55271393 -66572463 + B3A SINE B2 18 198 0 7 1006 699 153 90 22 chr11 55271403 55271537 -66572319 + B1_Mus2 SINE Alu 5 147 0 7 1006 481 277 62 37 chr11 55271549 55271710 -66572146 + B3A SINE B2 2 166 -32 7 1006 324 0 0 0 chr11 55271710 55271746 -66572110 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1006 574 298 15 69 chr11 55272362 55272446 -66571410 + ID SINE ID 6 78 -146 7 1006 561 281 20 14 chr11 55272446 55272594 -66571262 + B1F SINE Alu 1 149 0 7 1006 231 146 0 0 chr11 55272729 55272770 -66571086 + (GGA)n Simple_repeat Simple_repeat 2 42 0 7 1006 270 324 43 0 chr11 55272890 55273023 -66570833 - MIRb SINE MIR -69 199 58 7 1006 416 316 68 12 chr11 55273124 55273323 -66570533 - MIRb SINE MIR -6 262 44 7 1006 183 194 30 75 chr11 55274322 55274389 -66569467 + MIR3 SINE MIR 108 171 -37 7 1006 349 271 81 9 chr11 55275143 55275279 -66568577 + B1F SINE Alu 2 146 -3 7 1006 247 205 0 0 chr11 55275321 55275360 -66568496 + PB1D7 SINE Alu 16 54 -66 7 1006 599 169 15 106 chr11 55275360 55275480 -66568376 + B1_Mur4 SINE Alu 1 111 -9 7 1006 243 0 0 0 chr11 55275480 55275507 -66568349 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1006 496 169 15 106 chr11 55275507 55275518 -66568338 + PB1D9 SINE Alu 112 120 0 7 1006 1525 68 0 5 chr11 55275876 55276069 -66567787 + B2_Mm1t SINE B2 1 192 -1 7 1006 365 250 35 12 chr11 55276079 55276164 -66567692 + PB1D10 SINE Alu 30 116 -1 7 1006 1089 62 7 46 chr11 55276195 55276347 -66567509 + B1_Mus2 SINE Alu 2 147 0 7 1006 238 211 50 50 chr11 55276380 55276440 -66567416 + B1F SINE Alu 48 107 -10 7 1006 411 73 0 0 chr11 55276999 55277054 -66566802 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 7 1006 765 181 0 8 chr11 55277054 55277188 -66566668 - B1_Mus2 SINE Alu -10 137 5 7 1006 362 262 22 96 chr11 55277072 55277207 -66566649 - MT2B LTR ERVL -325 276 152 7 1006 23 0 0 0 chr11 55277207 55277230 -66566626 + AT_rich Low_complexity Low_complexity 1 23 0 7 1006 24 0 0 0 chr11 55277634 55277658 -66566198 + AT_rich Low_complexity Low_complexity 1 24 0 7 1006 1473 62 15 20 chr11 55277661 55277857 -66565999 + B2_Mm2 SINE B2 1 195 0 7 1006 337 236 100 54 chr11 55277870 55278000 -66565856 - RSINE1 SINE B4 -2 163 28 7 1006 311 169 68 0 chr11 55278055 55278114 -66565742 - B1F SINE Alu -7 142 80 7 1006 549 261 69 8 chr11 55278119 55278250 -66565606 + B1_Mur1 SINE Alu 9 147 -2 7 1006 370 311 19 0 chr11 55278287 55278393 -66565463 + RSINE1 SINE B4 51 158 -7 7 1006 244 295 0 0 chr11 55278394 55278455 -66565401 + B4A SINE B4 86 146 -146 7 1006 207 274 0 31 chr11 55278521 55278585 -66565271 + GA-rich Low_complexity Low_complexity 1 62 0 7 1006 387 0 0 0 chr11 55279161 55279204 -66564652 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 7 1006 479 282 138 8 chr11 55279314 55279561 -66564295 - L1MC4 LINE L1 -4986 1229 951 7 1006 1592 27 21 0 chr11 55279562 55279749 -66564107 - B2_Mm1t SINE B2 -1 192 2 7 1006 549 0 0 0 chr11 55279758 55279819 -66564037 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 7 1006 1402 65 11 16 chr11 55279819 55279997 -66563859 - B2_Mm1t SINE B2 -14 179 3 7 1006 200 189 0 0 chr11 55280044 55280081 -66563775 + C-rich Low_complexity Low_complexity 6 42 0 7 1006 566 249 152 6 chr11 55280139 55280360 -66563496 + Lx8 LINE L1 6826 7097 -599 7 1006 591 289 30 12 chr11 55280378 55280546 -66563310 + Lx8 LINE L1 7157 7327 -146 7 1006 1438 17 81 0 chr11 55280681 55280854 -66563002 + B2_Mm1a SINE B2 2 188 -5 7 1006 218 292 69 0 chr11 55280875 55280947 -66562909 + B1_Mur3 SINE Alu 1 77 -72 7 1006 387 0 0 0 chr11 55280980 55281023 -66562833 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1006 188 0 74 0 chr11 55281168 55281195 -66562661 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1006 573 161 26 18 chr11 55281204 55281318 -66562538 + B1_Mus2 SINE Alu 1 115 -32 7 1006 1247 48 0 0 chr11 55281339 55281485 -66562371 + B1_Mm SINE Alu 1 146 -1 7 1006 491 258 55 53 chr11 55281770 55281917 -66561939 + B1F SINE Alu 8 149 0 7 1006 324 219 123 0 chr11 55281944 55282017 -66561839 - ID_B1 SINE B4 -16 208 127 7 1006 228 316 0 12 chr11 55284355 55284435 -66559421 + ID4_ SINE ID 3 81 -2 7 1006 233 140 0 57 chr11 55285369 55285406 -66558450 + T-rich Low_complexity Low_complexity 14 50 0 7 1006 1172 75 0 0 chr11 55285406 55285553 -66558303 - B1_Mm SINE Alu 0 147 1 7 1006 233 140 0 57 chr11 55285553 55285568 -66558288 + T-rich Low_complexity Low_complexity 1 13 0 7 1006 1220 73 45 11 chr11 55285718 55285897 -66557959 - B2_Mm1t SINE B2 -7 186 2 7 1006 1240 48 0 0 chr11 55285927 55286074 -66557782 - B1_Mus2 SINE Alu 0 147 1 7 1006 1184 82 0 0 chr11 55286144 55286291 -66557565 - B1_Mm SINE Alu 0 147 1 7 1006 1060 87 7 0 chr11 55286369 55286507 -66557349 - B1_Mus1 SINE Alu -9 139 1 7 1006 731 197 13 20 chr11 55286673 55286823 -66557033 + B1_Mur1 SINE Alu 1 149 0 7 1006 185 65 32 0 chr11 55287017 55287048 -66556808 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 7 1006 359 203 72 0 chr11 55287342 55287411 -66556445 + ID_B1 SINE B4 149 222 -2 7 1006 317 240 0 128 chr11 55287503 55287589 -66556267 - ID4 SINE ID 0 83 9 7 1006 442 199 195 18 chr11 55287846 55288010 -66555846 - L1MD3 LINE L1 -149 7846 7654 7 1006 344 239 11 33 chr11 55288273 55288364 -66555492 - B1_Mus2 SINE Alu -38 109 21 7 1006 1142 82 0 0 chr11 55288370 55288517 -66555339 + B1_Mus2 SINE Alu 1 147 0 7 1006 1245 89 67 0 chr11 55288671 55288850 -66555006 - B2_Mm2 SINE B2 -4 191 1 7 1006 207 0 0 0 chr11 55288911 55288934 -66554922 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 1006 1392 67 39 0 chr11 55288934 55289113 -66554743 - B2_Mm2 SINE B2 -9 186 1 7 1006 34 24 0 0 chr11 55289114 55289155 -66554701 + AT_rich Low_complexity Low_complexity 1 41 0 7 1006 369 138 185 12 chr11 55289169 55289250 -66554606 - PB1D10 SINE Alu 0 117 23 7 1006 247 282 51 0 chr11 55289400 55289478 -66554378 - ID4_ SINE ID 0 83 2 7 1006 406 246 69 0 chr11 55290103 55290226 -66553630 + B1_Mus2 SINE Alu 1 144 -5 7 1006 211 294 20 0 chr11 55290506 55290557 -66553299 + B1F SINE Alu 93 144 -5 7 1006 481 235 131 7 chr11 55290710 55290847 -66553009 - B3A SINE B2 -42 156 3 7 1006 392 244 0 0 chr11 55290968 55291046 -66552810 - ID4_ SINE ID -1 82 5 7 1006 354 282 35 0 chr11 55291200 55291328 -66552528 - PB1D7 SINE Alu -3 146 15 7 1006 333 333 8 17 chr11 55291234 55291353 -66552503 - ID_B1 SINE B4 -35 189 72 7 1006 227 284 30 128 chr11 55291238 55291371 -66552485 - MT2B LTR ERVL -341 260 141 7 1006 26 0 0 0 chr11 55291466 55291492 -66552364 + AT_rich Low_complexity Low_complexity 1 26 0 7 1006 1244 103 11 26 chr11 55291712 55291901 -66551955 - B2_Mm2 SINE B2 -9 186 1 7 1006 1363 60 27 27 chr11 55291914 55291930 -66551926 - B2_Mm1t SINE B2 -4 189 174 7 1006 288 0 0 0 chr11 55291930 55291962 -66551894 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7 1006 1363 60 27 27 chr11 55291962 55292133 -66551723 - B2_Mm1t SINE B2 -20 173 2 7 1006 226 200 0 152 chr11 55292270 55292329 -66551527 - ID4_ SINE ID -2 81 32 7 1006 244 197 43 116 chr11 55292282 55292351 -66551505 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 7 1006 198 0 0 0 chr11 55292689 55292711 -66551145 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1006 1183 75 0 0 chr11 55292857 55293004 -66550852 + B1_Mus2 SINE Alu 1 147 0 7 1006 4369 181 93 23 chr11 55293046 55293971 -66549885 - Lx7 LINE L1 -9 7687 6698 7 1006 673 243 123 19 chr11 55294057 55294212 -66549644 + B3A SINE B2 1 171 -27 7 1006 195 42 0 0 chr11 55294213 55294237 -66549619 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1006 1029 24 16 0 chr11 55294322 55294448 -66549408 - B1_Mus1 SINE Alu 0 148 21 7 1006 326 244 50 0 chr11 55294869 55294961 -66548895 - B1F SINE Alu -37 112 13 7 1006 257 231 0 19 chr11 55295500 55295553 -66548303 + RMER30 DNA MER1_type 40 91 -111 7 1006 444 255 73 28 chr11 55295560 55295669 -66548187 + B3 SINE B2 2 115 -101 7 1006 25 0 0 0 chr11 55295689 55295714 -66548142 + AT_rich Low_complexity Low_complexity 1 25 0 7 1006 348 189 72 0 chr11 55295866 55295956 -66547900 + PB1D10 SINE Alu 13 107 -10 7 1006 216 97 0 0 chr11 55295956 55295987 -66547869 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1006 225 314 0 14 chr11 55296039 55296110 -66547746 + PB1 SINE Alu 56 125 -2 7 1006 180 204 78 39 chr11 55296158 55296209 -66547647 + L2 LINE L2 2817 2869 -550 7 1006 742 127 16 56 chr11 55296389 55296514 -66547342 - B1_Mus2 SINE Alu -14 133 14 7 1006 801 163 52 7 chr11 55296467 55296621 -66547235 + B2_Mm1t SINE B2 28 188 -5 7 1006 586 223 127 102 chr11 55296851 55296888 -66546968 + B3 SINE B2 2 40 -176 7 1006 1657 42 0 0 chr11 55296888 55297081 -66546775 + B2_Mm1a SINE B2 1 193 0 7 1006 586 223 127 102 chr11 55297081 55297248 -66546608 + B3 SINE B2 41 211 -5 7 1006 569 288 14 14 chr11 55297947 55298095 -66545761 - B1_Mur1 SINE Alu -1 148 1 8 1006 504 133 200 0 chr11 55298153 55298243 -66545613 - B3 SINE B2 -108 108 1 8 1006 232 291 0 104 chr11 55298282 55298378 -66545478 - RLTR25A LTR ERVK -495 608 523 8 1006 750 143 16 16 chr11 55298292 55298420 -66545436 - B1_Mus1 SINE Alu -16 132 5 8 1006 339 246 44 109 chr11 55298311 55298448 -66545408 - MT2B LTR ERVL -337 264 137 8 1006 489 194 41 42 chr11 55298589 55298714 -66545142 + B1_Mur3 SINE Alu 12 149 0 8 1006 312 254 113 0 chr11 55298949 55299020 -66544836 + B1_Mus1 SINE Alu 34 112 -36 8 1006 378 196 58 58 chr11 55299320 55299423 -66544433 - PB1D9 SINE Alu -15 105 3 8 1006 1436 63 21 0 chr11 55299488 55299677 -66544179 - B2_Mm1t SINE B2 0 193 1 8 1006 928 134 14 0 chr11 55300214 55300360 -66543496 + B1_Mur4 SINE Alu 2 150 0 8 1006 315 0 0 0 chr11 55301270 55301305 -66542551 + (TTTTA)n Simple_repeat Simple_repeat 4 38 0 8 1006 1073 31 0 0 chr11 55301307 55301435 -66542421 - B1_Mm SINE Alu -6 141 14 8 1006 523 259 92 69 chr11 55301435 55301480 -66542376 - B4 SINE B4 -71 220 44 8 1006 223 240 257 10 chr11 55301445 55301546 -66542310 - B1F2 SINE Alu 0 149 24 8 1006 502 210 20 0 chr11 55301707 55301807 -66542049 - B3 SINE B2 -11 205 104 8 1006 500 294 62 14 chr11 55301863 55302008 -66541848 - RSINE1 SINE B4 -2 163 12 8 1006 340 252 99 22 chr11 55302034 55302269 -66541587 - MTEa LTR MaLR 0 379 12 8 1006 254 245 92 0 chr11 55303503 55303601 -66540255 - L1MC4 LINE L1 -993 7049 6943 8 1006 681 96 0 0 chr11 55303842 55303936 -66539920 - BC1_Mm scRNA scRNA -58 94 1 8 1006 327 286 10 57 chr11 55303989 55304107 -66539749 - B1F1 SINE Alu -3 117 10 8 1006 799 199 140 0 chr11 55304167 55304353 -66539503 - B3 SINE B2 -2 214 3 8 1006 1212 55 0 0 chr11 55304619 55304764 -66539092 - B1_Mus2 SINE Alu -2 145 1 8 1006 186 189 0 0 chr11 55305004 55305041 -66538815 + CT-rich Low_complexity Low_complexity 4 40 0 8 1006 447 238 110 14 chr11 55305149 55305294 -66538562 - MER20 DNA MER1_type -60 159 1 8 1006 333 195 268 0 chr11 55305311 55305434 -66538422 - MTEa LTR MaLR -67 312 157 8 1006 1960 185 55 6 chr11 55305661 55306026 -66537830 - ORR1B1 LTR MaLR -11 383 1 8 1006 259 228 192 29 chr11 55306685 55306789 -66537067 - MTEb LTR MaLR -8 371 251 8 1006 405 228 23 45 chr11 55307184 55307290 -66536566 + B1F SINE Alu 1 104 -16 8 1006 269 270 99 22 chr11 55307411 55307502 -66536354 - PB1D10 SINE Alu -5 112 15 8 1006 374 261 34 0 chr11 55307615 55307703 -66536153 + RSINE1 SINE B4 50 140 -25 8 1006 501 268 27 52 chr11 55307721 55307919 -66535937 + B3 SINE B2 2 185 -10 8 1006 362 197 300 53 chr11 55308270 55308420 -66535436 - B2_Mm2 SINE B2 -8 187 1 8 1006 455 349 102 6 chr11 55309060 55309227 -66534629 - ID_B1 SINE B4 -31 193 11 8 1006 456 264 19 81 chr11 55309229 55309243 -66534613 - ID_B1 SINE B4 -56 236 180 8 1006 853 133 0 45 chr11 55309243 55309377 -66534479 - B1_Mur3 SINE Alu -1 148 21 8 1006 456 264 19 81 chr11 55309377 55309398 -66534458 - ID_B1 SINE B4 -56 179 81 8 1006 332 316 26 88 chr11 55309983 55310177 -66533679 - B4 SINE B4 -1 291 110 8 1006 546 276 40 46 chr11 55310224 55310399 -66533457 + B3 SINE B2 7 180 -36 8 1006 540 253 139 12 chr11 55310419 55310591 -66533265 - B3 SINE B2 0 216 23 8 1006 380 192 10 0 chr11 55310611 55310715 -66533141 + (TA)n Simple_repeat Simple_repeat 2 106 0 8 1006 774 237 82 0 chr11 55310742 55310936 -66532920 + B3 SINE B2 3 212 -4 8 1006 234 0 0 0 chr11 55312187 55312213 -66531643 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1006 251 291 41 49 chr11 55312213 55312336 -66531520 - B3 SINE B2 -12 204 83 8 1007 273 146 0 0 chr11 55313827 55313875 -66529981 + (A)n Simple_repeat Simple_repeat 1 48 0 8 1007 486 0 0 0 chr11 55314520 55314574 -66529282 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1007 431 230 71 0 chr11 55314732 55314845 -66529011 - B4 SINE B4 -170 122 2 8 1007 523 231 83 15 chr11 55315110 55315242 -66528614 + B1_Mur1 SINE Alu 1 141 -8 8 1007 237 273 24 61 chr11 55315281 55315363 -66528493 + B1F2 SINE Alu 13 91 -58 8 1007 180 0 0 0 chr11 55315656 55315676 -66528180 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1007 537 227 96 45 chr11 55316105 55316262 -66527594 - B3A SINE B2 -8 190 26 8 1007 246 272 120 0 chr11 55316406 55316498 -66527358 + PB1D10 SINE Alu 5 107 -10 8 1007 666 221 28 0 chr11 55316888 55317033 -66526823 - B1_Mur2 SINE Alu 0 149 1 8 1007 568 145 179 0 chr11 55317197 55317314 -66526542 - B1_Mur4 SINE Alu -12 138 1 8 1007 575 163 152 16 chr11 55319766 55319891 -66523965 - B1F SINE Alu -7 142 1 8 1007 427 238 70 9 chr11 55321005 55321139 -66522717 + B4A SINE B4 15 165 0 8 1007 333 0 0 0 chr11 55323252 55323289 -66520567 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1007 976 141 220 0 chr11 55323293 55323470 -66520386 + B3 SINE B2 1 216 0 8 1007 358 113 19 0 chr11 55324824 55324877 -66518979 + HAL1-3A_ME LINE L1 1975 2028 -830 8 1007 582 130 0 0 chr11 55324879 55324987 -66518869 + (CA)n Simple_repeat Simple_repeat 2 109 0 8 1007 275 161 18 0 chr11 55325419 55325475 -66518381 + CT-rich Low_complexity Low_complexity 2 58 0 8 1007 21 36 0 0 chr11 55327441 55327469 -66516387 + AT_rich Low_complexity Low_complexity 1 28 0 8 1007 207 0 0 0 chr11 55327716 55327739 -66516117 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1007 837 314 82 4 chr11 55329469 55329725 -66514131 - B4A SINE B4 0 292 17 8 1007 311 253 76 11 chr11 55329749 55329841 -66514015 - PB1D10 SINE Alu -51 98 1 8 1007 1145 186 14 27 chr11 55330217 55330438 -66513418 + URR1B DNA MER1_type 1 218 -7 8 1007 213 295 139 26 chr11 55330460 55330575 -66513281 + B1F SINE Alu 13 140 -9 8 1007 471 296 14 131 chr11 55330752 55330966 -66512890 - B3A SINE B2 -8 190 2 8 1007 1019 197 64 20 chr11 55331533 55331735 -66512121 + B3 SINE B2 5 215 -1 8 1007 770 241 0 0 chr11 55331777 55331910 -66511946 + RSINE1 SINE B4 4 136 -29 8 1007 207 186 0 0 chr11 55331957 55332000 -66511856 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1007 283 73 49 0 chr11 55332002 55332043 -66511813 + ID_B1 SINE B4 176 218 -6 8 1007 1066 116 0 0 chr11 55332050 55332196 -66511660 + B1_Mus1 SINE Alu 1 146 -2 8 1007 636 256 168 0 chr11 55333120 55333311 -66510545 - ID_B1 SINE B4 0 224 2 8 1007 1068 109 7 0 chr11 55333325 55333472 -66510384 - B1_Mus1 SINE Alu 0 148 1 8 1007 472 216 26 51 chr11 55333483 55333600 -66510256 - PB1D10 SINE Alu 0 117 4 8 1007 360 0 0 0 chr11 55333884 55333924 -66509932 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1007 468 0 0 0 chr11 55333924 55333975 -66509881 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1007 1179 275 120 27 chr11 55334610 55334972 -66508884 + Tigger7 DNA MER2_type 65 467 -2024 8 1007 1170 112 42 11 chr11 55334972 55335161 -66508695 - B2_Mm2 SINE B2 0 195 1 8 1007 1179 275 120 27 chr11 55335161 55335206 -66508650 + Tigger7 DNA MER2_type 468 510 -1981 8 1007 910 250 29 0 chr11 55335213 55335417 -66508439 - B3 SINE B2 -4 212 3 8 1007 728 200 131 0 chr11 55335440 55335615 -66508241 - B3A SINE B2 0 198 1 8 1007 291 288 8 112 chr11 55335641 55335766 -66508090 + Tigger7 DNA MER2_type 2380 2491 0 8 1007 352 268 70 26 chr11 55336062 55336177 -66507679 + L1M4 LINE L1 48 167 -6375 8 1007 719 201 18 60 chr11 55336178 55336344 -66507512 + RSINE1 SINE B4 3 163 -2 8 1007 411 257 54 27 chr11 55336411 55336523 -66507333 - PB1D9 SINE Alu -1 119 5 8 1007 345 283 62 121 chr11 55336566 55336752 -66507104 - L1MB7 LINE L1 -194 5990 5825 8 1007 593 239 50 55 chr11 55336752 55336951 -66506905 - B3A SINE B2 0 198 1 8 1007 345 283 62 121 chr11 55336951 55337086 -66506770 - L1MB7 LINE L1 -360 5824 5688 8 1007 454 274 110 105 chr11 55337122 55337485 -66506371 + L1M4 LINE L1 190 554 -5988 8 1007 233 288 0 0 chr11 55337485 55337551 -66506305 + ID4 SINE ID 1 66 -17 8 1007 290 321 127 35 chr11 55337791 55338020 -66505836 + L1M4 LINE L1 842 1091 -5451 8 1007 323 107 0 35 chr11 55338069 55338127 -66505729 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 8 1007 456 303 99 22 chr11 55338184 55338366 -66505490 - B3A SINE B2 -1 197 2 8 1007 371 245 55 73 chr11 55338375 55338485 -66505371 - ID_B1 SINE B4 -2 222 115 8 1007 285 285 129 65 chr11 55338485 55338509 -66505347 - B1_Mur1 SINE Alu 0 144 2 8 1007 478 216 6 115 chr11 55338588 55338745 -66505111 + B1F1 SINE Alu 10 149 0 8 1007 429 280 113 27 chr11 55338756 55339013 -66504843 + L1M4 LINE L1 1230 1508 -5034 8 1007 879 92 25 14 chr11 55339194 55339488 -66504368 + (TCTA)n Simple_repeat Simple_repeat 1 297 0 8 1007 612 276 101 24 chr11 55339488 55339696 -66504160 - MTD LTR MaLR 0 419 196 8 1007 729 131 0 28 chr11 55339696 55339838 -66504018 + CT-rich Low_complexity Low_complexity 1 138 0 8 1007 828 0 0 0 chr11 55339838 55339930 -66503926 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 8 1007 1074 88 0 0 chr11 55339930 55340067 -66503789 - B1_Mus1 SINE Alu -11 137 1 8 1007 818 225 90 11 chr11 55340086 55340275 -66503581 - MTD LTR MaLR -211 208 5 8 1007 245 220 34 0 chr11 55340369 55340428 -66503428 + L1MC4 LINE L1 7911 7971 -71 8 1007 217 360 59 34 chr11 55341001 55341119 -66502737 + MIR SINE MIR 14 134 -128 8 1007 697 319 71 6 chr11 55341137 55341459 -66502397 + MER2 DNA MER2_type 1 343 -2 8 1007 604 236 6 77 chr11 55341525 55341681 -66502175 - RSINE1 SINE B4 0 165 21 8 1007 493 266 32 19 chr11 55341788 55341945 -66501911 + HAL1-2a_MD LINE L1 2344 2502 -522 9 1007 2011 145 82 94 chr11 55342179 55342265 -66501591 + MTC LTR MaLR 1 100 -321 9 1007 581 0 0 14 chr11 55342265 55342335 -66501521 + (TCCC)n Simple_repeat Simple_repeat 4 72 0 9 1007 2011 145 82 94 chr11 55342335 55342369 -66501487 + MTC LTR MaLR 101 107 -314 9 1007 1558 52 0 20 chr11 55342369 55342566 -66501290 - B2_Mm1a SINE B2 0 193 1 9 1007 972 121 7 32 chr11 55342568 55342722 -66501134 - B1_Mur4 SINE Alu 0 150 1 9 1007 2011 145 82 94 chr11 55342722 55343023 -66500833 + MTC LTR MaLR 108 421 0 9 1007 729 79 0 0 chr11 55343415 55343529 -66500327 + (TTCTC)n Simple_repeat Simple_repeat 1 114 0 9 1007 203 159 0 43 chr11 55343530 55343576 -66500280 + CT-rich Low_complexity Low_complexity 4 47 0 9 1007 231 140 0 0 chr11 55343578 55343628 -66500228 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 1007 912 118 0 15 chr11 55343628 55343765 -66500091 - B1_Mur2 SINE Alu -6 143 9 9 1007 226 250 69 69 chr11 55344032 55344148 -66499708 - L1M2 LINE L1 -584 5728 5613 9 1007 309 270 22 11 chr11 55344252 55344342 -66499514 + B4A SINE B4 108 198 -94 9 1007 4275 139 3 1 chr11 55344740 55345389 -66498467 - Lx LINE L1 -1 6653 6004 9 1007 287 290 304 8 chr11 55345508 55345633 -66498223 + MLT1J LTR MaLR 1 162 -350 9 1007 440 208 84 9 chr11 55346275 55346382 -66497474 - B1F SINE Alu 0 149 35 9 1007 343 200 0 96 chr11 55346455 55346538 -66497318 - B4A SINE B4 -14 278 204 9 1007 480 234 69 69 chr11 55346516 55346554 -66497302 - B2_Mm2 SINE B2 -3 192 164 9 1007 345 93 0 0 chr11 55346554 55346608 -66497248 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1007 480 234 69 69 chr11 55346608 55346757 -66497099 - B2_Mm2 SINE B2 -32 163 5 9 1007 340 230 145 33 chr11 55346760 55346934 -66496922 - B4A SINE B4 -63 229 7 9 1007 519 259 35 0 chr11 55350224 55350367 -66493489 + B1F1 SINE Alu 1 148 -1 9 1007 447 202 0 0 chr11 55350471 55350565 -66493291 + CT-rich Low_complexity Low_complexity 2 95 0 9 1007 768 213 0 7 chr11 55350570 55350707 -66493149 - RSINE1 SINE B4 -27 138 3 9 1007 266 312 0 38 chr11 55350767 55350847 -66493009 - B3 SINE B2 -3 213 137 9 1007 572 202 10 0 chr11 55350907 55351011 -66492845 - B1_Mur4 SINE Alu 0 150 46 9 1007 278 261 52 42 chr11 55350933 55351029 -66492827 - MT2B LTR ERVL -323 278 182 9 1007 705 225 58 32 chr11 55351251 55351439 -66492417 + B3A SINE B2 1 193 -5 9 1007 486 0 0 0 chr11 55351633 55351687 -66492169 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1007 1478 203 91 10 chr11 55351718 55352137 -66491719 + RMER20A LTR ERVK 1 516 0 9 1007 24 53 0 0 chr11 55352531 55352569 -66491287 + AT_rich Low_complexity Low_complexity 1 38 0 9 1007 670 225 58 107 chr11 55352574 55352798 -66491058 + B3 SINE B2 1 213 -3 9 1007 414 0 0 0 chr11 55352831 55352877 -66490979 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1007 459 290 96 8 chr11 55352883 55353008 -66490848 - RSINE1 SINE B4 -29 136 1 9 1007 710 146 41 0 chr11 55354438 55354609 -66489247 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 9 1007 1139 78 26 0 chr11 55354628 55354905 -66488951 + (TCCA)n Simple_repeat Simple_repeat 1 284 0 9 1007 360 253 39 0 chr11 55355172 55355258 -66488598 - PB1D10 SINE Alu -26 101 3 9 1007 603 293 0 0 chr11 55355310 55355474 -66488382 - RSINE1 SINE B4 0 165 2 9 1007 202 327 0 66 chr11 55356036 55356157 -66487699 - MIRb SINE MIR -1 267 155 9 1007 1236 231 123 19 chr11 55356220 55356538 -66487318 + ORR1E LTR MaLR 4 354 -5 9 1007 480 235 6 12 chr11 55356611 55356775 -66487081 + CT-rich Low_complexity Low_complexity 2 164 0 9 1007 446 260 11 6 chr11 55356776 55356962 -66486894 - B4 SINE B4 -61 231 2 9 1007 1923 292 94 18 chr11 55357127 55357311 -66486545 + L1M2 LINE L1 4141 4341 -1802 9 1007 384 22 0 0 chr11 55357311 55357356 -66486500 + (TAA)n Simple_repeat Simple_repeat 1 45 0 9 1007 1923 292 94 18 chr11 55357356 55357386 -66486470 + L1M2 LINE L1 4342 4370 -1773 9 1007 633 233 33 169 chr11 55357386 55357532 -66486324 + ID_B1 SINE B4 4 156 -68 9 1007 864 219 66 10 chr11 55357532 55357730 -66486126 + B3 SINE B2 1 209 -7 9 1007 633 233 33 169 chr11 55357730 55357826 -66486030 + ID_B1 SINE B4 157 213 -11 9 1007 1923 292 94 18 chr11 55357826 55358610 -66485246 + L1M2 LINE L1 4371 5216 -927 9 1007 1047 256 11 46 chr11 55358678 55358960 -66484896 + Lx5 LINE L1 6779 7050 0 9 1007 630 196 170 21 chr11 55359113 55359301 -66484555 + MTE2b LTR MaLR 1 216 -163 9 1007 919 193 88 5 chr11 55359317 55359510 -66484346 - B3 SINE B2 0 216 8 9 1007 812 280 17 0 chr11 55359503 55359678 -66484178 + MTE2b LTR MaLR 202 379 0 9 1007 219 295 66 0 chr11 55359766 55359827 -66484029 - MIR SINE MIR -182 80 16 9 1007 1499 82 0 0 chr11 55360029 55360223 -66483633 - B2_Mm2 SINE B2 0 195 2 9 1007 492 261 92 72 chr11 55360692 55360845 -66483011 - RSINE1 SINE B4 -6 159 4 9 1007 1260 59 34 50 chr11 55361034 55361213 -66482643 - B2_Mm2 SINE B2 -15 180 5 9 1007 180 0 0 0 chr11 55361237 55361257 -66482599 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1007 21 57 0 0 chr11 55361365 55361400 -66482456 + AT_rich Low_complexity Low_complexity 1 35 0 9 1007 785 146 57 0 chr11 55361586 55361709 -66482147 + B1_Mus2 SINE Alu 2 131 -16 9 1007 203 0 0 36 chr11 55361714 55361742 -66482114 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 9 1007 974 278 14 14 chr11 55361891 55362176 -66481680 + B4A SINE B4 1 285 -7 9 1007 504 281 144 64 chr11 55362246 55362654 -66481202 + L1M2 LINE L1 13 371 -6838 9 1007 709 231 118 0 chr11 55362924 55363110 -66480746 - ID_B1 SINE B4 -5 219 12 9 1007 477 320 54 66 chr11 55363126 55363534 -66480322 + L1M2 LINE L1 1883 2285 -4924 9 1007 433 298 85 0 chr11 55363527 55363715 -66480141 + L1M2 LINE L1 2407 2610 -4599 9 1007 935 172 17 33 chr11 55363725 55363905 -66479951 + B2_Mm2 SINE B2 1 177 -18 9 1007 5398 91 35 7 chr11 55363905 55364664 -66479192 + Lx3B LINE L1 6189 6968 -5 9 1007 735 275 22 0 chr11 55364694 55364872 -66478984 + B3A SINE B2 1 182 -16 9 1007 1105 191 5 59 chr11 55364918 55365066 -66478790 + B3 SINE B2 1 144 -72 9 1007 1166 179 0 51 chr11 55365066 55365301 -66478555 - URR1B DNA MER1_type -2 223 1 9 1007 1105 191 5 59 chr11 55365301 55365374 -66478482 + B3 SINE B2 145 210 -6 9 1007 514 250 26 0 chr11 55365406 55365522 -66478334 + RSINE1 SINE B4 11 129 -36 9 1007 600 257 76 24 chr11 55365579 55365656 -66478200 + L1M2 LINE L1 2603 2678 -4531 9 1007 623 200 65 29 chr11 55365656 55365795 -66478061 + B1_Mur2 SINE Alu 1 144 -5 9 1007 600 257 76 24 chr11 55365795 55365928 -66477928 + L1M2 LINE L1 2679 2824 -4385 9 1007 1182 230 0 0 chr11 55366015 55366228 -66477628 - ID_B1 SINE B4 -11 213 1 9 1007 676 299 52 154 chr11 55366479 55366547 -66477309 - B4A SINE B4 0 292 230 9 1007 2135 112 66 0 chr11 55366547 55366851 -66477005 - ORR1A2 LTR MaLR 0 327 4 9 1007 676 299 52 154 chr11 55366851 55367087 -66476769 - B4A SINE B4 -63 229 19 9 1007 991 250 10 5 chr11 55367106 55367315 -66476541 - B3 SINE B2 0 216 7 9 1007 1221 55 0 0 chr11 55367923 55368069 -66475787 - B1_Mus1 SINE Alu -1 147 2 9 1007 250 144 89 0 chr11 55368224 55368314 -66475542 + (TA)n Simple_repeat Simple_repeat 1 98 0 9 1007 708 12 0 0 chr11 55368333 55368414 -66475442 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 9 1007 359 301 138 81 chr11 55369238 55369459 -66474397 + L1M5 LINE L1 4651 4893 -1253 9 1007 751 196 0 39 chr11 55369459 55369613 -66474243 + B1_Mur1 SINE Alu 2 149 0 9 1007 359 301 138 81 chr11 55369613 55369651 -66474205 + L1M5 LINE L1 4894 4925 -1221 9 1007 672 243 7 0 chr11 55369664 55369800 -66474056 + ID_B1 SINE B4 82 218 -6 9 1007 307 268 67 53 chr11 55369668 55369818 -66474038 - YREP_Mm Unknown Unknown -1501 311 160 9 1007 771 296 18 103 chr11 55369967 55370249 -66473607 + B4A SINE B4 35 292 0 9 1007 213 39 0 0 chr11 55370249 55370275 -66473581 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1007 246 125 0 0 chr11 55370274 55370322 -66473534 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1007 303 335 46 92 chr11 55370322 55370539 -66473317 + L1M5 LINE L1 5314 5520 -604 9 1007 1023 279 14 5 chr11 55370630 55370853 -66473003 + B4A SINE B4 2 226 -66 9 1007 526 283 18 42 chr11 55370855 55371021 -66472835 + RSINE1 SINE B4 2 163 -2 9 1007 396 59 0 0 chr11 55371027 55371078 -66472778 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 9 1007 217 200 0 41 chr11 55371120 55371193 -66472663 + CT-rich Low_complexity Low_complexity 3 72 0 9 1007 325 247 25 49 chr11 55371233 55371314 -66472542 + MLT1A LTR MaLR 229 307 -67 9 1007 1561 205 93 26 chr11 55371787 55372173 -66471683 - MTD LTR MaLR 0 419 8 9 1007 761 145 145 0 chr11 55372461 55372585 -66471271 - URR1A DNA MER1_type -84 142 1 9 1007 234 192 19 19 chr11 55372827 55372880 -66470976 + GA-rich Low_complexity Low_complexity 3 55 0 9 1007 3939 128 110 9 chr11 55373075 55373481 -66470375 - RMER6A LTR ERVK -7 749 317 9 1007 1187 40 13 0 chr11 55373481 55373633 -66470223 + (TCTCCC)n Simple_repeat Simple_repeat 4 157 0 9 1007 3939 128 110 9 chr11 55373633 55373906 -66469950 - RMER6A LTR ERVK -440 316 2 9 1007 593 332 37 5 chr11 55374020 55374235 -66469621 + MIRb SINE MIR 27 248 -20 9 1007 754 138 339 12 chr11 55374356 55374524 -66469332 + URR1B DNA MER1_type 1 223 -2 9 1007 463 219 0 79 chr11 55374573 55374687 -66469169 - PB1D9 SINE Alu -7 113 9 9 1007 233 212 0 184 chr11 55374615 55374713 -66469143 - MT2B2 LTR ERVL -350 234 155 9 1007 248 245 235 41 chr11 55374973 55375143 -66468713 + RLTR21 LTR ERVK 1052 1254 -318 9 1007 245 53 53 0 chr11 55375205 55375243 -66468613 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 9 1007 662 300 52 41 chr11 55375268 55375536 -66468320 - B4 SINE B4 -18 274 4 9 1007 774 224 77 15 chr11 55375936 55376131 -66467725 - ID_B1 SINE B4 -17 207 1 9 1007 1674 235 38 15 chr11 55376131 55376528 -66467328 + RCHARR1 DNA MER1_type 335 740 -234 9 1007 435 305 18 89 chr11 55376545 55376714 -66467142 + B4 SINE B4 37 193 -99 9 1007 563 208 7 133 chr11 55376612 55376762 -66467094 + B1_Mur1 SINE Alu 7 137 -12 9 1007 339 273 149 122 chr11 55376760 55376981 -66466875 + B4A SINE B4 66 292 0 9 1007 695 151 6 0 chr11 55376983 55377142 -66466714 + (CA)n Simple_repeat Simple_repeat 1 160 0 9 1007 803 240 52 17 chr11 55377149 55377382 -66466474 + RCHARR1 DNA MER1_type 734 974 0 9 1007 37 0 0 0 chr11 55377497 55377534 -66466322 + AT_rich Low_complexity Low_complexity 1 37 0 9 1007 476 193 0 143 chr11 55377907 55377949 -66465907 - PB1D10 SINE Alu 0 117 81 1 1007 1976 131 115 3 chr11 55377949 55378279 -66465577 + ORR1B2 LTR MaLR 1 367 0 1 1007 476 193 0 143 chr11 55378279 55378369 -66465487 - PB1D10 SINE Alu -37 80 4 1 1007 1137 62 0 27 chr11 55378438 55378586 -66465270 - B1_Mus2 SINE Alu -2 145 2 1 1007 333 0 0 0 chr11 55378659 55378696 -66465160 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1007 336 24 0 0 chr11 55378696 55378736 -66465120 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1007 606 231 20 187 chr11 55378746 55378838 -66465018 - B4 SINE B4 -1 291 220 1 1007 751 160 278 0 chr11 55378838 55379007 -66464849 - B3 SINE B2 0 216 1 1 1007 606 231 20 187 chr11 55379007 55379261 -66464595 - B4 SINE B4 -73 219 3 1 1007 655 126 185 0 chr11 55379300 55379419 -66464437 - B1_Mur1 SINE Alu 0 149 9 1 1007 378 387 19 10 chr11 55380397 55380603 -66463253 - MIRb SINE MIR -23 245 38 1 1007 262 261 21 83 chr11 55380679 55380705 -66463151 - B4 SINE B4 -6 286 261 1 1007 372 43 0 0 chr11 55380705 55380751 -66463105 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1007 262 261 21 83 chr11 55380751 55380820 -66463036 - B4 SINE B4 -32 260 197 1 1007 393 155 0 14 chr11 55380821 55380893 -66462963 - ORR1D2 LTR MaLR -2 368 298 1 1007 1347 18 6 12 chr11 55380995 55381167 -66462689 - L1Md_F3 LINE L1 -2 6582 6412 1 1007 715 241 7 0 chr11 55381169 55381314 -66462542 - ORR1D2 LTR MaLR -59 311 166 1 1007 345 24 0 0 chr11 55381314 55381356 -66462500 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1007 546 235 88 24 chr11 55381358 55381528 -66462328 - ORR1D2 LTR MaLR -189 181 1 1 1007 749 227 116 6 chr11 55381528 55381687 -66462169 - B4 SINE B4 -113 179 2 1 1007 340 265 35 38 chr11 55381698 55381809 -66462047 - B1F1 SINE Alu -7 110 2 1 1007 210 143 0 0 chr11 55382463 55382498 -66461358 + (TCC)n Simple_repeat Simple_repeat 2 36 0 1 1007 285 239 0 14 chr11 55382725 55382797 -66461059 - ID4 SINE ID -11 72 2 1 1007 269 339 57 93 chr11 55383092 55383232 -66460624 + ID_B1 SINE B4 32 166 -58 1 1007 400 298 29 9 chr11 55383152 55383257 -66460599 + PB1D7 SINE Alu 6 112 -8 1 1007 191 36 36 0 chr11 55383257 55383285 -66460571 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1007 371 183 117 2 chr11 55384519 55384615 -66459241 + PB1D10 SINE Alu 5 116 -33 1 1007 705 24 0 0 chr11 55385111 55385194 -66458662 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 1 1007 548 266 190 5 chr11 55385231 55385431 -66458425 - B4A SINE B4 -55 237 1 1 1007 1870 183 103 0 chr11 55385580 55385947 -66457909 + MTD LTR MaLR 4 408 -11 1 1007 3169 58 10 10 chr11 55385992 55386392 -66457464 - MTB LTR MaLR 0 400 1 1 1007 376 212 289 15 chr11 55387139 55387325 -66456531 + MTEb LTR MaLR 106 342 -37 1 1007 270 215 133 51 chr11 55387617 55387715 -66456141 + MER117 DNA MER1_type 59 164 -33 1 1007 974 158 11 21 chr11 55388510 55388697 -66455159 + B2_Mm2 SINE B2 2 186 -9 1 1007 253 308 42 42 chr11 55388711 55388806 -66455050 + ID_B1 SINE B4 81 175 -49 1 1007 348 286 0 0 chr11 55388726 55388810 -66455046 + PB1D7 SINE Alu 18 101 -19 1 1007 221 208 14 0 chr11 55389365 55389437 -66454419 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1007 598 274 26 7 chr11 55389524 55389678 -66454178 - RSINE1 SINE B4 -7 158 2 1 1007 1103 222 42 15 chr11 55390450 55390715 -66453141 - MTD LTR MaLR -147 272 1 1 1007 297 75 0 0 chr11 55391530 55391570 -66452286 + (AGGGGG)n Simple_repeat Simple_repeat 5 44 0 1 1007 886 223 0 0 chr11 55391573 55391748 -66452108 - B3A SINE B2 -23 175 1 1 1007 333 0 0 0 chr11 55391798 55391835 -66452021 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1007 8249 69 2 0 chr11 55392017 55393487 -66450369 - L1_Mus1 LINE L1 -1 6653 5100 1 1007 1561 245 43 13 chr11 55393487 55393880 -66449976 + MTD LTR MaLR 14 418 -1 1 1007 453 19 0 0 chr11 55394778 55394832 -66449024 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1007 503 270 63 63 chr11 55394918 55395076 -66448780 + B4 SINE B4 24 181 -111 1 1007 651 60 0 0 chr11 55395246 55395330 -66448526 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 1 1007 820 272 37 5 chr11 55395403 55395617 -66448239 - B4 SINE B4 -68 224 4 1 1007 258 81 0 0 chr11 55396588 55396625 -66447231 + (CCAA)n Simple_repeat Simple_repeat 2 38 0 1 1007 198 118 0 0 chr11 55396689 55396723 -66447133 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1007 632 270 169 13 chr11 55396727 55396963 -66446893 - B4A SINE B4 -18 274 2 1 1007 441 54 0 0 chr11 55397119 55397175 -66446681 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1007 278 333 32 24 chr11 55397622 55397748 -66446108 - MIR SINE MIR -20 242 116 1 1007 352 188 37 12 chr11 55398227 55398308 -66445548 + PB1D9 SINE Alu 23 105 -15 1 1007 240 111 0 0 chr11 55398496 55398532 -66445324 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1007 533 301 69 58 chr11 55398788 55399063 -66444793 + B4A SINE B4 3 280 -12 1 1007 605 80 0 11 chr11 55399117 55399206 -66444650 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1007 381 269 44 13 chr11 55399401 55399559 -66444297 + Lx8 LINE L1 6950 7112 -361 1 1007 511 296 91 19 chr11 55399589 55399799 -66444057 - ORR1E LTR MaLR 0 359 135 1 1007 447 87 0 0 chr11 55399847 55399916 -66443940 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1007 708 241 50 59 chr11 55400070 55400166 -66443690 - B4 SINE B4 0 292 107 1 1007 1227 126 15 20 chr11 55400166 55400361 -66443495 - B2_Mm2 SINE B2 0 195 2 1 1007 708 247 70 116 chr11 55400361 55400558 -66443298 - B4 SINE B4 -68 224 22 1 1007 196 304 128 0 chr11 55400743 55400845 -66443011 + L2 LINE L2 1431 1545 -1874 1 1007 180 360 50 14 chr11 55402746 55402887 -66440969 + MIRb SINE MIR 92 237 -31 1 1007 465 297 69 0 chr11 55403056 55403231 -66440625 + L3 LINE CR1 3957 4143 -346 1 1007 243 344 18 24 chr11 55403318 55403482 -66440374 - MIRb SINE MIR -38 230 68 1 1007 261 0 0 0 chr11 55403509 55403538 -66440318 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1007 1023 266 35 7 chr11 55403580 55403864 -66439992 - B4 SINE B4 0 292 1 1 1007 223 277 84 0 chr11 55403969 55404052 -66439804 + L3 LINE CR1 4294 4383 -106 1 1007 358 233 0 0 chr11 55404169 55404242 -66439614 + B2_Mm2 SINE B2 15 87 -108 1 1007 998 151 0 0 chr11 55404248 55404394 -66439462 - B1_Mus1 SINE Alu -1 147 2 1 1007 783 221 101 15 chr11 55404551 55404749 -66439107 - ID_B1 SINE B4 -7 217 3 1 1007 684 237 45 0 chr11 55404811 55404967 -66438889 - B3 SINE B2 -5 211 49 1 1007 232 244 48 12 chr11 55405248 55405331 -66438525 + MIR SINE MIR 117 202 -60 1 1007 276 273 15 0 chr11 55405349 55405415 -66438441 - ID SINE ID -149 75 9 1 1007 741 260 69 72 chr11 55405922 55406212 -66437644 + B4 SINE B4 1 289 -3 1 1007 763 167 0 83 chr11 55406593 55406750 -66437106 + B1_Mur3 SINE Alu 1 144 -5 1 1007 255 79 0 0 chr11 55407039 55407077 -66436779 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 1007 737 226 31 19 chr11 55407077 55407239 -66436617 - RSINE1 SINE B4 0 165 2 1 1007 225 294 15 0 chr11 55407504 55407572 -66436284 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1007 700 270 71 75 chr11 55407581 55407861 -66435995 - B4A SINE B4 0 292 14 1 1007 898 214 12 74 chr11 55408650 55408892 -66434964 + B4A SINE B4 3 229 -63 1 1007 386 261 41 97 chr11 55409828 55410024 -66433832 - B3A SINE B2 -2 214 27 1 1007 785 164 27 14 chr11 55410046 55410194 -66433662 - B1_Mur4 SINE Alu 0 150 1 1 1007 601 213 16 0 chr11 55410462 55410584 -66433272 - ID_B1 SINE B4 -2 222 99 1 1007 332 206 14 34 chr11 55412245 55412391 -66431465 + CT-rich Low_complexity Low_complexity 4 146 0 1 1007 1284 88 0 0 chr11 55412413 55412628 -66431228 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 1 1007 904 266 23 0 chr11 55412630 55412848 -66431008 - ID_B1 SINE B4 0 224 2 1 1007 326 226 36 65 chr11 55412866 55412995 -66430861 + MIR SINE MIR 75 204 -64 1 1007 224 250 0 0 chr11 55413364 55413408 -66430448 - B4A SINE B4 -165 127 84 1 1007 357 24 0 0 chr11 55413986 55414028 -66429828 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1007 396 0 0 0 chr11 55416655 55416699 -66427157 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1007 237 265 14 14 chr11 55416821 55416890 -66426966 - MIR SINE MIR -58 150 82 1 1007 257 266 13 0 chr11 55418420 55418499 -66425357 + MER20 DNA MER1_type 140 219 0 1 1007 227 273 0 0 chr11 55421551 55421606 -66422250 + CT-rich Low_complexity Low_complexity 2 56 0 1 1007 2713 172 82 12 chr11 55422505 55422994 -66420862 - Lx5 LINE L1 0 7050 6528 1 1007 562 242 0 92 chr11 55423779 55423920 -66419936 - B1_Mur1 SINE Alu -20 129 2 1 1007 231 88 0 0 chr11 55424245 55424279 -66419577 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1007 258 175 52 29 chr11 55424494 55424590 -66419266 - L1M2 LINE L1 -2926 3217 3111 1 1007 1173 274 61 50 chr11 55424616 55425329 -66418527 + Lx8 LINE L1 5083 5801 -1672 1 1007 21 71 0 0 chr11 55425423 55425465 -66418391 + AT_rich Low_complexity Low_complexity 1 42 0 1 1007 1082 132 17 28 chr11 55425470 55425650 -66418206 + B2_Mm1t SINE B2 2 179 -14 1 1007 466 88 310 26 chr11 55425697 55425813 -66418043 + B2_Mm2 SINE B2 47 195 0 1 1007 29 28 0 0 chr11 55426226 55426262 -66417594 + AT_rich Low_complexity Low_complexity 1 36 0 1 1007 818 247 0 57 chr11 55426339 55426549 -66417307 - B3A SINE B2 0 198 1 1 1007 259 289 132 0 chr11 55427147 55427230 -66416626 + RSINE1 SINE B4 3 96 -69 1 1007 248 88 0 66 chr11 55427231 55427292 -66416564 + GA-rich Low_complexity Low_complexity 3 59 0 1 1007 218 258 51 124 chr11 55427632 55427769 -66416087 - L2 LINE L2 -452 2967 2841 1 1007 2298 127 16 61 chr11 55428062 55428490 -66415366 - RLTR9E LTR ERVK 0 409 1 1 1007 337 331 0 0 chr11 55428570 55428700 -66415156 - Tigger5 DNA MER2_type -70 2336 2207 1 1007 486 0 0 0 chr11 55428708 55428762 -66415094 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1007 729 277 14 37 chr11 55428993 55429207 -66414649 + B3A SINE B2 8 216 0 1 1007 740 233 0 0 chr11 55429208 55429354 -66414502 + B1_Mur1 SINE Alu 4 149 0 1 1007 365 259 0 12 chr11 55430113 55430199 -66413657 + PB1D10 SINE Alu 2 86 -31 1 1007 874 280 39 78 chr11 55430203 55430522 -66413334 - MTEa LTR MaLR 0 379 73 1 1007 1391 80 21 0 chr11 55430522 55430710 -66413146 + B2_Mm1t SINE B2 2 193 0 1 1007 874 280 39 78 chr11 55430710 55430723 -66413133 - MTEa LTR MaLR -307 72 60 1 1007 351 0 0 0 chr11 55430766 55430805 -66413051 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1007 511 258 9 0 chr11 55430825 55430944 -66412912 - B1_Mur1 SINE Alu -14 135 16 1 1007 764 217 19 100 chr11 55431145 55431355 -66412501 + B3A SINE B2 3 195 -3 1 1007 264 303 137 40 chr11 55431614 55431892 -66411964 - L1MEg LINE L1 -2844 3302 2998 1 1007 539 273 200 11 chr11 55431937 55432122 -66411734 - B4A SINE B4 -72 220 1 1 1007 1235 12 19 6 chr11 55432256 55432418 -66411438 + (TCTA)n Simple_repeat Simple_repeat 3 166 0 1 1007 316 241 109 18 chr11 55432488 55432598 -66411258 - PB1D7 SINE Alu 0 120 1 1 1007 291 320 137 22 chr11 55432745 55433109 -66410747 - L1MEg LINE L1 -4747 1495 1090 1 1007 465 66 0 0 chr11 55433226 55433287 -66410569 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 1 1007 794 302 31 56 chr11 55433298 55433627 -66410229 - MTE2a LTR MaLR -78 341 12 1 1007 293 253 26 13 chr11 55433995 55434071 -66409785 + PB1D10 SINE Alu 36 112 -5 1 1007 226 360 19 32 chr11 55434146 55434304 -66409552 + MLT1K LTR MaLR 8 163 -432 1 1007 837 266 53 107 chr11 55434284 55434585 -66409271 - MTEa LTR MaLR -22 357 80 1 1007 477 0 0 0 chr11 55434585 55434638 -66409218 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1007 837 266 53 107 chr11 55434638 55434710 -66409146 - MTEa LTR MaLR -300 79 4 1 1007 33 0 0 0 chr11 55435018 55435051 -66408805 + AT_rich Low_complexity Low_complexity 1 33 0 1 1007 531 322 10 10 chr11 55435053 55435260 -66408596 + MLT1K LTR MaLR 389 595 0 1 1007 2319 136 44 5 chr11 55435986 55436371 -66407485 + MTC LTR MaLR 1 400 -21 1 1007 2857 178 42 13 chr11 55436373 55436925 -66406931 + RLTR20D LTR ERVK 1 568 0 1 1007 618 14 0 0 chr11 55437383 55437454 -66406402 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1007 378 0 0 0 chr11 55437969 55438011 -66405845 + (CCTA)n Simple_repeat Simple_repeat 1 42 0 1 1007 1257 56 11 11 chr11 55438022 55438202 -66405654 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1007 698 262 93 96 chr11 55438303 55438678 -66405178 - MTE2a LTR MaLR 0 379 6 1 1007 322 325 112 6 chr11 55438932 55439093 -66404763 + MIR SINE MIR 7 184 -78 1 1007 288 200 0 0 chr11 55439210 55439270 -66404586 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1007 691 281 21 43 chr11 55439270 55439456 -66404400 - B3A SINE B2 -16 182 1 1 1007 381 283 144 7 chr11 55439530 55439669 -66404187 - RSINE1 SINE B4 -6 159 2 1 1007 1837 179 44 22 chr11 55440039 55440405 -66403451 + ORR1D1 LTR MaLR 1 374 0 1 1007 839 150 20 20 chr11 55441656 55441806 -66402050 - B1_Mur4 SINE Alu 0 150 1 1 1007 893 227 40 0 chr11 55441951 55442127 -66401729 - B3A SINE B2 -15 183 1 1 1007 23 0 0 0 chr11 55442173 55442196 -66401660 + AT_rich Low_complexity Low_complexity 1 23 0 1 1007 743 322 24 97 chr11 55442371 55442637 -66401219 - MTE2a LTR MaLR -2 377 106 1 1007 1266 34 0 0 chr11 55442637 55442784 -66401072 + B1_Mm SINE Alu 1 147 0 1 1007 743 322 24 97 chr11 55442784 55442899 -66400957 - MTE2a LTR MaLR -274 105 24 1 1007 228 291 37 25 chr11 55443184 55443265 -66400591 + L2b LINE L2 3240 3321 -54 1 1008 283 394 35 13 chr11 55443553 55443869 -66399987 - MER113 DNA MER1_type 0 521 199 1 1008 837 190 0 0 chr11 55443901 55444080 -66399776 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1008 205 171 49 0 chr11 55444081 55444122 -66399734 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1 1008 630 275 52 12 chr11 55444139 55444312 -66399544 + B3A SINE B2 1 180 -18 1 1008 1051 303 0 3 chr11 55444422 55444713 -66399143 - B4 SINE B4 -2 290 1 1 1008 504 0 0 0 chr11 55444901 55444957 -66398899 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1008 588 65 0 0 chr11 55445523 55445600 -66398256 + (GGGAGA)n Simple_repeat Simple_repeat 6 82 0 1 1008 692 271 32 53 chr11 55446118 55446399 -66397457 + B4A SINE B4 2 276 -16 1 1008 180 111 0 0 chr11 55446479 55446506 -66397350 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1008 1098 83 7 7 chr11 55446506 55446652 -66397204 - B1_Mus2 SINE Alu 0 147 2 1 1008 243 100 0 0 chr11 55446652 55446692 -66397164 - URR1B DNA MER1_type -69 156 117 1 1008 649 264 52 119 chr11 55446814 55447109 -66396747 + Lx8 LINE L1 6907 7181 -292 1 1008 1117 178 22 14 chr11 55447109 55447331 -66396525 - URR1B DNA MER1_type 0 225 2 1 1008 649 264 52 119 chr11 55447331 55447345 -66396511 + Lx8 LINE L1 7182 7195 -278 1 1008 861 104 7 14 chr11 55447781 55447927 -66395929 + (TTCTC)n Simple_repeat Simple_repeat 3 147 0 1 1008 2723 243 79 9 chr11 55448133 55448782 -66395074 - Lx8 LINE L1 -299 7174 6481 1 1008 212 271 34 0 chr11 55448949 55449008 -66394848 + CT-rich Low_complexity Low_complexity 5 65 0 1 1008 832 245 25 68 chr11 55449397 55449633 -66394223 + B4 SINE B4 2 227 -65 1 1008 1130 213 0 5 chr11 55449637 55449849 -66394007 + B3 SINE B2 1 211 -5 1 1008 528 93 0 0 chr11 55449932 55450007 -66393849 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1008 693 36 0 0 chr11 55450007 55450090 -66393766 + (GA)n Simple_repeat Simple_repeat 2 85 0 1 1008 198 167 50 0 chr11 55450148 55450208 -66393648 + GA-rich Low_complexity Low_complexity 4 66 0 1 1008 504 32 0 0 chr11 55450479 55450541 -66393315 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1008 393 85 0 0 chr11 55451436 55451495 -66392361 - Lx2 LINE L1 0 6997 6939 1 1008 257 336 62 0 chr11 55451797 55451925 -66391931 + MIR SINE MIR 63 198 -64 1 1008 1110 256 0 63 chr11 55452046 55452330 -66391526 - B4 SINE B4 -24 268 3 1 1008 211 299 10 103 chr11 55452759 55452785 -66391071 - RSINE1 SINE B4 0 165 141 1 1008 252 59 0 0 chr11 55452785 55452819 -66391037 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1008 328 254 224 126 chr11 55452819 55453083 -66390773 - B4A SINE B4 -20 272 2 1 1008 273 319 8 48 chr11 55453268 55453393 -66390463 - MER5A DNA MER1_type -23 166 47 1 1008 793 108 0 15 chr11 55453962 55454102 -66389754 + L1_Mus4 LINE L1 6083 6203 -451 1 1008 660 87 0 0 chr11 55454102 55454194 -66389662 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1008 748 168 0 62 chr11 55454194 55454212 -66389644 + L1_Mus4 LINE L1 6204 6219 -435 1 1008 547 216 0 10 chr11 55454591 55454694 -66389162 - RSINE1 SINE B4 -61 104 3 1 1008 462 221 73 0 chr11 55454967 55455103 -66388753 + MER2 DNA MER2_type 117 262 -83 1 1008 903 206 26 11 chr11 55455210 55455401 -66388455 - B3 SINE B2 -22 194 1 1 1008 2703 80 3 5 chr11 55455583 55455958 -66387898 - L1_Mus4 LINE L1 -1 6635 6262 1 1008 1149 286 18 5 chr11 55456059 55456442 -66387414 + L1M2 LINE L1 4370 4757 -1386 1 1008 499 191 188 16 chr11 55456457 55456585 -66387271 - Lx8 LINE L1 -317 7156 7007 1 1008 1259 284 90 67 chr11 55456600 55457611 -66386245 - L1M2 LINE L1 -2632 3511 2478 1 1008 1216 89 0 16 chr11 55457753 55457935 -66385921 - B2_Mm2 SINE B2 -3 192 14 1 1008 775 204 30 50 chr11 55458477 55458678 -66385178 + B3A SINE B2 2 198 0 1 1008 814 287 9 0 chr11 55459191 55459407 -66384449 - ID_B1 SINE B4 -4 220 3 1 1008 192 295 81 40 chr11 55460463 55460562 -66383294 + MIR SINE MIR 44 146 -62 1 1008 515 16 16 0 chr11 55461727 55461791 -66382065 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1008 709 262 0 0 chr11 55461796 55461937 -66381919 - B3A SINE B2 -54 144 4 1 1008 747 259 62 37 chr11 55462031 55462327 -66381529 - L1MA4 LINE L1 -178 5978 5681 1 1008 298 233 0 40 chr11 55462550 55462626 -66381230 + MIRm SINE MIR 89 161 -115 1 1008 277 234 13 25 chr11 55463546 55463625 -66380231 - ID4 SINE ID -1 82 5 1 1008 422 285 37 37 chr11 55463972 55464107 -66379749 + MER20 DNA MER1_type 27 161 -58 1 1008 195 129 0 0 chr11 55464981 55465012 -66378844 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1008 15099 82 11 1 chr11 55465740 55468486 -66375370 + L1_Mus1 LINE L1 3802 6567 0 1 1008 195 263 48 48 chr11 55468693 55468797 -66375059 - L2 LINE L2 -505 2914 2811 1 1008 313 265 0 46 chr11 55468835 55468922 -66374934 - ID4_ SINE ID 0 83 1 1 1008 2770 106 42 7 chr11 55469017 55469425 -66374431 + BGLII_Mus LTR ERVK 1 422 0 1 1008 207 0 0 0 chr11 55469986 55470009 -66373847 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1008 200 307 13 0 chr11 55470009 55470084 -66373772 + (CATATA)n Simple_repeat Simple_repeat 4 79 0 1 1008 292 242 243 44 chr11 55470324 55470640 -66373216 - L1MA5 LINE L1 -159 6153 5775 1 1008 378 0 0 0 chr11 55470643 55470685 -66373171 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1008 461 263 10 0 chr11 55470685 55470784 -66373072 - PB1D7 SINE Alu -11 109 10 1 1008 1314 235 55 41 chr11 55470905 55471291 -66372565 + MTE2a LTR MaLR 18 402 -17 1 1008 531 303 48 5 chr11 55471291 55471480 -66372376 - L1MA5 LINE L1 -580 5732 5536 1 1008 214 301 0 14 chr11 55472318 55472392 -66371464 + CT-rich Low_complexity Low_complexity 4 76 0 1 1008 665 241 28 22 chr11 55473730 55473749 -66370107 - B3A SINE B2 -15 183 165 1 1008 498 83 0 0 chr11 55473749 55473821 -66370035 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1008 665 241 28 22 chr11 55473821 55473979 -66369877 - B3A SINE B2 -34 164 5 1 1008 268 307 0 0 chr11 55474248 55474323 -66369533 + ID4 SINE ID 4 78 -5 1 1008 767 281 71 36 chr11 55474452 55474732 -66369124 - RMER15 LTR ERVL -55 520 231 1 1008 579 189 0 28 chr11 55474838 55474947 -66368909 + B1F SINE Alu 42 147 -2 1 1008 375 238 59 0 chr11 55475372 55475473 -66368383 + PB1D10 SINE Alu 3 109 -8 1 1008 459 252 51 9 chr11 55475603 55475768 -66368088 - L1M2 LINE L1 -1451 4692 4470 1 1008 246 271 0 0 chr11 55476043 55476102 -66367754 - L1M5 LINE L1 -461 5663 5605 1 1008 537 216 60 0 chr11 55476104 55476220 -66367636 + RSINE1 SINE B4 2 124 -41 1 1008 326 277 20 0 chr11 55476559 55476660 -66367196 - PB1D7 SINE Alu -17 103 1 1 1008 983 247 133 25 chr11 55476694 55477018 -66366838 - ORR1E LTR MaLR 0 359 1 1 1008 41907 5 1 1 chr11 55477511 55484271 -66359585 - L1Md_A LINE L1 0 6582 1 1 1008 491 269 102 41 chr11 55484363 55484510 -66359346 - RSINE1 SINE B4 -8 157 2 1 1008 837 175 177 22 chr11 55484538 55484719 -66359137 + B3 SINE B2 2 210 -6 1 1008 600 263 31 83 chr11 55485266 55485494 -66358362 - B3A SINE B2 0 216 1 1 1008 363 60 0 0 chr11 55486383 55486433 -66357423 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1008 343 325 115 35 chr11 55486445 55486706 -66357150 - B4A SINE B4 -10 282 1 1 1008 284 335 146 5 chr11 55487345 55487537 -66356319 + MER20 DNA MER1_type 1 219 0 1 1008 282 227 53 0 chr11 55487661 55487930 -66355926 + (TAGA)n Simple_repeat Simple_repeat 1 283 0 1 1008 186 143 0 0 chr11 55487931 55487966 -66355890 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1008 240 139 40 73 chr11 55487987 55488111 -66355745 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 1 1008 731 161 41 20 chr11 55488661 55488807 -66355049 - B1_Mur3 SINE Alu 0 149 1 1 1008 215 301 52 112 chr11 55488855 55488955 -66354901 - PB1D9 SINE Alu 0 120 24 1 1008 288 0 0 0 chr11 55488955 55488987 -66354869 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1008 215 301 52 112 chr11 55488987 55489002 -66354854 - PB1D9 SINE Alu -97 23 12 1 1008 1138 211 91 16 chr11 55489378 55489679 -66354177 + ORR1D1 LTR MaLR 1 300 -74 1 1008 387 0 0 0 chr11 55489731 55489774 -66354082 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1008 582 244 89 25 chr11 55489906 55490108 -66353748 - L1M2 LINE L1 -2040 4103 3889 1 1008 210 298 0 0 chr11 55490115 55490162 -66353694 + polypyrimidine Low_complexity Low_complexity 2 48 0 1 1008 904 138 6 12 chr11 55490162 55490330 -66353526 + CT-rich Low_complexity Low_complexity 5 171 0 1 1008 584 242 15 0 chr11 55490330 55490462 -66353394 - B1_Mur1 SINE Alu -14 135 2 1 1008 961 271 126 7 chr11 55490493 55490745 -66353111 - L1M2 LINE L1 -2298 3845 3559 1 1008 447 19 0 0 chr11 55490745 55490797 -66353059 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1008 961 271 126 7 chr11 55490797 55490957 -66352899 - L1M2 LINE L1 -2585 3558 3384 1 1008 366 257 40 0 chr11 55491030 55491131 -66352725 - B1F SINE Alu -7 142 38 1 1008 231 146 0 0 chr11 55491419 55491460 -66352396 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1008 270 0 0 0 chr11 55491504 55491534 -66352322 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1008 863 253 16 0 chr11 55493740 55493926 -66349930 + ID_B1 SINE B4 27 215 -9 1 1008 337 283 9 15 chr11 55494101 55494247 -66349609 - MIRc SINE MIR -55 207 64 1 1008 621 40 0 0 chr11 55496844 55496920 -66346936 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1008 180 135 0 0 chr11 55496959 55496996 -66346860 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1008 805 285 4 31 chr11 55496996 55497224 -66346632 - B4 SINE B4 -69 223 2 1 1008 456 67 0 0 chr11 55499199 55499259 -66344597 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1008 253 297 198 0 chr11 55499259 55499360 -66344496 - RSINE1 SINE B4 -41 124 4 1 1008 371 56 19 0 chr11 55499535 55499589 -66344267 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1008 686 211 40 0 chr11 55499627 55499779 -66344077 - B4 SINE B4 -10 282 125 1 1008 440 224 0 20 chr11 55500000 55500100 -66343756 - B4 SINE B4 -193 99 2 1 1008 2432 74 3 6 chr11 55500992 55501319 -66342537 + IAPLTR3 LTR ERVK 1 326 0 2 1008 274 278 119 40 chr11 55501375 55501655 -66342201 - L1MC LINE L1 -2344 3802 3498 3 1008 815 271 45 104 chr11 55501723 55502126 -66341730 + MTE2a LTR MaLR 1 379 0 4 1008 273 307 76 31 chr11 55502297 55502457 -66341399 - L1MC LINE L1 -3049 3097 2923 3 1008 1200 106 0 0 chr11 55502552 55502731 -66341125 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 5 1008 887 48 20 27 chr11 55502737 55502887 -66340969 + (TCTCC)n Simple_repeat Simple_repeat 2 150 0 6 1008 183 156 0 0 chr11 55502889 55502921 -66340935 + CT-rich Low_complexity Low_complexity 3 34 0 7 1008 1250 48 0 0 chr11 55502921 55503068 -66340788 - B1_Mus2 SINE Alu 0 147 1 8 1008 26 0 0 0 chr11 55503078 55503104 -66340752 + AT_rich Low_complexity Low_complexity 1 26 0 9 1008 240 181 56 0 chr11 55503120 55503192 -66340664 + CT-rich Low_complexity Low_complexity 3 78 0 1 1008 337 289 153 16 chr11 55503223 55503406 -66340450 - Lx8 LINE L1 -61 7412 7205 1 1008 338 330 55 0 chr11 55503417 55503526 -66340330 - ID_B1 SINE B4 -24 200 86 1 1008 246 313 89 20 chr11 55503986 55504188 -66339668 + HAL1b LINE L1 1371 1586 -423 1 1008 724 255 5 71 chr11 55504217 55504428 -66339428 - B3A SINE B2 0 198 2 1 1008 2646 208 39 66 chr11 55504447 55505069 -66338787 - Lx5 LINE L1 -6 7044 6440 1 1008 508 201 71 39 chr11 55505484 55505639 -66338217 - B3A SINE B2 0 216 57 1 1008 696 263 75 5 chr11 55505816 55506015 -66337841 - B3 SINE B2 0 216 4 1 1008 296 215 92 0 chr11 55506499 55506564 -66337292 - ID2 SINE ID -11 72 2 1 1008 740 249 155 0 chr11 55507201 55507394 -66336462 - ID_B1 SINE B4 -1 223 1 1 1008 241 234 152 9 chr11 55507827 55507939 -66335917 - HAL1b LINE L1 -745 1264 1137 2 1008 189 147 0 0 chr11 55508060 55508094 -66335762 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2 1008 487 291 22 141 chr11 55508106 55508290 -66335566 - RSINE1 SINE B4 -1 164 3 2 1008 1462 87 0 14 chr11 55508640 55508850 -66335006 + MTA_Mm LTR MaLR 190 396 0 2 1008 394 230 181 11 chr11 55508907 55509188 -66334668 + MTD LTR MaLR 1 407 -12 2 1008 200 263 13 0 chr11 55509529 55509605 -66334251 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1008 500 276 162 35 chr11 55510335 55510594 -66333262 + B4A SINE B4 1 292 0 2 1008 1124 182 50 18 chr11 55510652 55510870 -66332986 + URR1B DNA MER1_type 1 225 0 2 1008 681 134 0 0 chr11 55510915 55511027 -66332829 + (GGA)n Simple_repeat Simple_repeat 3 114 0 2 1008 697 224 80 27 chr11 55511459 55511647 -66332209 + B3A SINE B2 1 198 0 2 1008 815 241 53 13 chr11 55511996 55512223 -66331633 + B4 SINE B4 48 283 -9 3 1008 1479 205 130 9 chr11 55512698 55513028 -66330828 - ORR1D2 LTR MaLR 0 370 1 3 1008 421 278 19 77 chr11 55513067 55513223 -66330633 - B1F SINE Alu -1 148 2 3 1008 558 0 0 0 chr11 55513810 55513872 -66329984 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1008 224 322 34 11 chr11 55513878 55513966 -66329890 - MIRb SINE MIR -132 136 47 3 1008 618 14 0 0 chr11 55514197 55514268 -66329588 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1008 581 93 0 13 chr11 55514298 55514364 -66329492 + L1_Mm LINE L1 5521 5586 -297 3 1008 8218 49 1 0 chr11 55514364 55515347 -66328509 + L1Md_F2 LINE L1 5587 6570 -12 3 1008 877 188 55 0 chr11 55516037 55516218 -66327638 + ORR1E LTR MaLR 2 192 -167 3 1008 279 177 0 0 chr11 55516265 55516327 -66327529 + (CACCAT)n Simple_repeat Simple_repeat 4 65 0 3 1008 384 250 0 0 chr11 55516345 55516473 -66327383 + (CAT)n Simple_repeat Simple_repeat 3 130 0 4 1008 1353 262 45 0 chr11 55516508 55516844 -66327012 + ORR1D2 LTR MaLR 6 356 -14 4 1008 212 339 25 17 chr11 55516861 55516981 -66326875 + (CACCAT)n Simple_repeat Simple_repeat 2 122 0 4 1008 726 48 3 1 chr11 55517045 55517152 -66326704 + B1_Mus1 SINE Alu 1 109 -11 4 1008 369 230 45 14 chr11 55517979 55518271 -66325585 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 4 1008 815 160 69 0 chr11 55518403 55518534 -66325322 + B1_Mus1 SINE Alu 3 142 -6 4 1008 209 351 22 28 chr11 55518796 55518975 -66324881 + L2a LINE L2 2975 3152 -274 4 1008 2884 50 11 0 chr11 55518980 55519341 -66324515 - L1Md_F2 LINE L1 0 6582 6218 4 1008 817 181 28 0 chr11 55519361 55519505 -66324351 + B1_Mur4 SINE Alu 2 149 -1 4 1008 521 99 0 12 chr11 55519539 55519621 -66324235 + (CAAA)n Simple_repeat Simple_repeat 1 81 0 4 1008 562 290 28 40 chr11 55520054 55520300 -66323556 - L1MA5A LINE L1 -412 5885 5603 5 1008 375 233 103 8 chr11 55520683 55520800 -66323056 - L2 LINE L2 -969 2450 2323 5 1008 1280 222 32 51 chr11 55521549 55521918 -66321938 + ORR1E LTR MaLR 1 379 0 5 1008 284 337 9 19 chr11 55522726 55522832 -66321024 + CT-rich Low_complexity Low_complexity 1 105 0 5 1008 265 215 126 104 chr11 55522860 55522995 -66320861 - B1_Mus1 SINE Alu 0 148 11 5 1008 625 246 45 70 chr11 55522876 55523077 -66320779 - ID_B1 SINE B4 -21 203 8 5 1008 210 222 315 0 chr11 55523402 55523456 -66320400 + B1F1 SINE Alu 3 73 -76 5 1008 595 253 48 0 chr11 55523669 55523815 -66320041 - RSINE1 SINE B4 -1 164 12 5 1008 1022 155 130 0 chr11 55523823 55524023 -66319833 - URR1A DNA MER1_type 0 226 1 5 1008 459 258 92 38 chr11 55524446 55524631 -66319225 + MTE2a LTR MaLR 13 207 -212 5 1008 270 0 0 0 chr11 55524632 55524662 -66319194 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1008 507 187 140 0 chr11 55524691 55524798 -66319058 - B3A SINE B2 -76 122 1 6 1008 465 272 77 65 chr11 55524798 55524863 -66318993 + MTE2a LTR MaLR 214 285 -94 5 1008 2256 88 35 3 chr11 55524863 55525182 -66318674 + ORR1A4 LTR MaLR 1 329 0 6 1008 465 272 77 65 chr11 55525182 55525270 -66318586 + MTE2a LTR MaLR 286 369 -10 5 1008 288 0 0 0 chr11 55525485 55525517 -66318339 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1008 1122 273 15 0 chr11 55525522 55525789 -66318067 - B4 SINE B4 -20 272 2 6 1008 819 273 40 0 chr11 55526687 55526885 -66316971 + B4A SINE B4 83 288 -4 6 1008 261 328 16 25 chr11 55526906 55527028 -66316828 + (CA)n Simple_repeat Simple_repeat 2 122 0 6 1008 4503 48 2 2 chr11 55527292 55527835 -66316021 + L1_Mus1 LINE L1 6024 6566 -1 6 1008 738 284 73 32 chr11 55527851 55528199 -66315657 - MER97a DNA MER1_type? -54 840 478 6 1008 760 222 88 0 chr11 55528199 55528393 -66315463 - ID_B1 SINE B4 -13 211 1 6 1008 738 284 73 32 chr11 55528393 55528484 -66315372 - MER97a DNA MER1_type? -417 477 383 6 1008 519 262 77 30 chr11 55528640 55528809 -66315047 + B3A SINE B2 1 177 -18 7 1008 5738 60 19 0 chr11 55529667 55530396 -66313460 + L1_Mus2 LINE L1 5823 6565 -1 7 1008 1940 133 87 3 chr11 55530412 55530758 -66313098 + ORR1B1 LTR MaLR 20 394 0 7 1008 412 280 9 36 chr11 55531195 55531306 -66312550 - PB1D10 SINE Alu -8 109 2 7 1008 544 60 12 23 chr11 55532191 55532277 -66311579 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 7 1008 475 291 6 17 chr11 55532281 55532456 -66311400 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 7 1008 371 106 159 23 chr11 55533015 55533127 -66310729 - B2_Mm2 SINE B2 -7 188 46 7 1008 1326 90 23 0 chr11 55533177 55533354 -66310502 - B2_Mm2 SINE B2 -14 181 1 7 1008 240 291 62 141 chr11 55533356 55533487 -66310369 - RMER1C Other Other -31 1311 1202 7 1008 243 0 0 0 chr11 55533487 55533514 -66310342 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1008 240 291 62 141 chr11 55533514 55533658 -66310198 - RMER1C Other Other -141 1201 1058 7 1008 1363 302 19 0 chr11 55533515 55533925 -66309931 - Lx8 LINE L1 -144 7329 6912 8 1008 234 239 14 40 chr11 55534130 55534204 -66309652 + MIRb SINE MIR 182 253 -15 8 1008 414 0 0 0 chr11 55535062 55535108 -66308748 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1008 394 271 100 88 chr11 55535124 55535294 -66308562 - B4 SINE B4 -12 280 109 8 1008 268 265 181 0 chr11 55535453 55535536 -66308320 - B4A SINE B4 -192 100 3 8 1008 711 0 0 0 chr11 55535938 55536017 -66307839 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 8 1008 270 194 9 0 chr11 55536675 55536740 -66307116 + B3A SINE B2 2 69 -126 8 1008 884 301 40 42 chr11 55536748 55537229 -66306627 - L1M2 LINE L1 -3239 2904 2425 8 1008 308 237 21 31 chr11 55537238 55537334 -66306522 + PB1D10 SINE Alu 21 115 -2 8 1008 888 279 85 87 chr11 55537638 55538177 -66305679 - L1MA4 LINE L1 -285 6015 5478 8 1008 264 30 0 0 chr11 55538216 55538249 -66305607 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1008 581 289 38 19 chr11 55538249 55538408 -66305448 - B4 SINE B4 -130 162 1 9 1008 308 294 41 16 chr11 55539726 55539847 -66304009 + ORR1E LTR MaLR 132 255 -104 9 1008 5391 54 3 0 chr11 55539856 55540521 -66303335 - L1Md_F2 LINE L1 -1 6581 5915 9 1008 2879 80 3 0 chr11 55540521 55540904 -66302952 + Lx8 LINE L1 5533 5913 -1560 9 1008 279 311 39 80 chr11 55541842 55542105 -66301751 - MLT1C LTR MaLR 0 390 149 9 1008 205 274 0 0 chr11 55542257 55542308 -66301548 - MIR SINE MIR -61 147 97 9 1008 2061 143 154 19 chr11 55542503 55542874 -66300982 - MTC LTR MaLR 0 421 1 9 1008 559 300 6 24 chr11 55542932 55543096 -66300760 - RSINE1 SINE B4 -2 163 3 9 1008 357 242 71 40 chr11 55543148 55543247 -66300609 - PB1D10 SINE Alu 0 117 16 9 1008 1147 217 89 45 chr11 55543667 55543796 -66300060 + MTE2a LTR MaLR 1 135 -244 9 1008 339 25 0 0 chr11 55543796 55543836 -66300020 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1008 225 0 0 0 chr11 55543836 55543861 -66299995 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1008 1147 217 89 45 chr11 55543861 55544043 -66299813 + MTE2a LTR MaLR 136 326 -53 9 1008 305 259 34 51 chr11 55545889 55546007 -66297849 - MLT1N2 LTR MaLR -4 558 443 1 1008 335 157 0 41 chr11 55546189 55546262 -66297594 + MTE2a LTR MaLR 310 379 0 9 1008 844 252 165 14 chr11 55546278 55546624 -66297232 + MTD LTR MaLR 18 415 -4 1 1008 239 309 29 0 chr11 55546725 55546793 -66297063 + B4 SINE B4 16 85 -207 1 1008 1854 285 12 8 chr11 55546804 55547286 -66296570 + Lx8 LINE L1 6270 6753 -720 1 1008 748 192 72 30 chr11 55547417 55547583 -66296273 - B3A SINE B2 -4 194 22 1 1008 249 33 0 0 chr11 55547588 55547618 -66296238 + (TCC)n Simple_repeat Simple_repeat 3 32 0 1 1008 336 234 95 67 chr11 55547625 55547804 -66296052 - L1_Rod LINE L1 -2543 3597 3414 1 1008 393 22 0 0 chr11 55547804 55547850 -66296006 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1008 415 239 276 27 chr11 55547850 55548075 -66295781 - L1_Rod LINE L1 -2741 3402 3085 1 1008 502 291 0 0 chr11 55548090 55548207 -66295649 - PB1D7 SINE Alu -1 119 3 1 1008 284 258 114 25 chr11 55549411 55549544 -66294312 - PB1D10 SINE Alu 0 149 9 1 1008 6742 59 0 2 chr11 55549641 55550469 -66293387 - L1_Mus1 LINE L1 0 6567 5742 1 1008 216 0 0 0 chr11 55551010 55551034 -66292822 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1008 785 76 8 0 chr11 55551081 55551199 -66292657 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 1 1008 261 0 0 0 chr11 55551199 55551227 -66292629 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 1 1008 650 246 0 0 chr11 55551243 55551373 -66292483 - B1_Mur1 SINE Alu -15 134 5 1 1008 1048 232 22 9 chr11 55551384 55551606 -66292250 - B4 SINE B4 -67 225 1 1 1008 1714 195 71 6 chr11 55552060 55552411 -66291445 + ORR1D1 LTR MaLR 1 374 0 1 1008 3322 191 37 40 chr11 55553293 55554101 -66289755 + RLTR40 LTR ERVK 7 812 -5 1 1008 189 0 0 0 chr11 55554519 55554540 -66289316 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1008 946 284 30 4 chr11 55554544 55554809 -66289047 - B4A SINE B4 -20 272 1 1 1008 1098 272 9 141 chr11 55555271 55555703 -66288153 - MTEb LTR MaLR 0 379 5 1 1008 2573 152 124 4 chr11 55555724 55556232 -66287624 - RMER4B LTR ERVK 0 585 17 1 1008 478 309 49 16 chr11 55556356 55556540 -66287316 - B3A SINE B2 0 198 9 1 1008 419 176 11 0 chr11 55556633 55556724 -66287132 + CT-rich Low_complexity Low_complexity 1 92 0 1 1008 785 162 2 16 chr11 55556732 55556879 -66286977 + B3 SINE B2 2 139 -56 1 1008 387 0 0 0 chr11 55556885 55556928 -66286928 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1008 484 270 76 32 chr11 55556946 55557195 -66286661 + Lx7 LINE L1 5927 6186 -1510 1 1008 8048 96 9 4 chr11 55557751 55559348 -66284508 + L1_Mus3 LINE L1 5033 6636 -2 1 1008 5745 100 21 4 chr11 55559359 55560163 -66283693 + Lx2A LINE L1 6178 6995 -13 1 1008 21 0 0 0 chr11 55560163 55560184 -66283672 + AT_rich Low_complexity Low_complexity 1 21 0 1 1008 835 256 39 10 chr11 55560522 55560727 -66283129 + ID_B1 SINE B4 5 215 -9 1 1008 759 32 0 0 chr11 55561189 55561283 -66282573 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 1 1008 323 242 42 10 chr11 55561409 55561505 -66282351 + RMER15 LTR ERVL 474 572 -3 1 1008 351 121 0 0 chr11 55562189 55562247 -66281609 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1008 1643 244 17 49 chr11 55562310 55562462 -66281394 - Lx9 LINE L1 -171 7473 7330 1 1008 6667 9 0 5 chr11 55562462 55563203 -66280653 - L1Md_T LINE L1 0 6582 5846 1 1008 1643 244 17 49 chr11 55563203 55563519 -66280337 - Lx9 LINE L1 -315 7329 7020 1 1008 462 120 71 71 chr11 55563518 55563644 -66280212 - Lx9 LINE L1 -2 7642 7517 1 1008 366 209 15 0 chr11 55563638 55563705 -66280151 - Lx9 LINE L1 -863 6781 6714 1 1008 2674 179 37 22 chr11 55563711 55564280 -66279576 + Lx9 LINE L1 5318 5928 -1716 1 1008 835 246 57 14 chr11 55564507 55564717 -66279139 + Lx9 LINE L1 6373 6591 -1053 1 1008 392 350 7 21 chr11 55564784 55564927 -66278929 - ID_B1 SINE B4 -82 142 2 1 1008 28 29 0 0 chr11 55565053 55565088 -66278768 + AT_rich Low_complexity Low_complexity 1 35 0 1 1008 486 146 0 0 chr11 55565111 55565193 -66278663 + (TAA)n Simple_repeat Simple_repeat 2 83 0 1 1008 266 275 0 32 chr11 55565239 55565333 -66278523 + CT-rich Low_complexity Low_complexity 2 92 0 1 1008 809 223 91 0 chr11 55565373 55565548 -66278308 - B3 SINE B2 -25 191 1 1 1008 464 288 99 18 chr11 55565561 55565784 -66278072 - L1_Rod LINE L1 -583 5264 5024 1 1008 780 269 70 10 chr11 55565820 55566118 -66277738 - L1M2 LINE L1 -1100 4780 4457 1 1008 720 0 0 0 chr11 55566266 55566346 -66277510 + (GGGAGA)n Simple_repeat Simple_repeat 5 84 0 1 1008 1190 54 0 7 chr11 55567255 55567404 -66276452 - B1_Mus1 SINE Alu 0 148 1 1 1008 207 167 24 0 chr11 55567411 55567453 -66276403 + MER5B DNA MER1_type 4 46 -132 1 1008 211 351 13 13 chr11 55568046 55568124 -66275732 - L2b LINE L2 -1 3374 3297 1 1008 1785 173 123 8 chr11 55568125 55568498 -66275358 - MTC LTR MaLR 0 421 6 1 1008 974 299 37 23 chr11 55568569 55568939 -66274917 + MTE2a LTR MaLR 10 389 -30 1 1008 315 0 0 0 chr11 55568939 55568974 -66274882 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1008 853 136 0 14 chr11 55569342 55569484 -66274372 - B1_Mur3 SINE Alu -1 148 9 1 1008 382 291 0 18 chr11 55569509 55569621 -66274235 - PB1D10 SINE Alu -7 110 1 1 1008 393 286 0 35 chr11 55569796 55569912 -66273944 + PB1D10 SINE Alu 5 116 -1 1 1008 648 233 82 51 chr11 55569912 55570109 -66273747 + B3A SINE B2 4 210 -6 1 1008 1117 272 45 42 chr11 55570412 55570765 -66273091 + ORR1E LTR MaLR 1 354 -5 1 1008 319 261 109 38 chr11 55570955 55571194 -66272662 - L1M3 LINE L1 -2108 4032 3777 1 1008 2970 23 14 6 chr11 55571580 55571929 -66271927 + L1Md_F2 LINE L1 6231 6582 0 1 1008 21 36 0 0 chr11 55572005 55572033 -66271823 + AT_rich Low_complexity Low_complexity 1 28 0 1 1008 198 71 0 0 chr11 55572175 55572203 -66271653 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 1008 27 0 0 0 chr11 55572227 55572254 -66271602 + AT_rich Low_complexity Low_complexity 1 27 0 1 1008 323 385 56 38 chr11 55572711 55572924 -66270932 - Charlie15a DNA MER1_type -6 218 2 1 1008 316 308 1 30 chr11 55573311 55573428 -66270428 + MIRb SINE MIR 37 157 -111 1 15 922 231 38 5 chr11 55574336 55574545 -66269311 - B3 SINE B2 0 216 1 1 1009 364 333 0 0 chr11 55574816 55574921 -66268935 - PB1D10 SINE Alu -12 105 1 1 1009 726 220 118 20 chr11 55574931 55575135 -66268721 - ID_B1 SINE B4 0 224 1 1 1009 352 266 13 0 chr11 55575146 55575225 -66268631 - ID2 SINE ID -3 80 1 1 1009 297 0 0 0 chr11 55575980 55576013 -66267843 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1009 603 272 6 36 chr11 55576029 55576197 -66267659 - RSINE1 SINE B4 0 165 3 1 1009 272 351 11 0 chr11 55576298 55576392 -66267464 + ID_B1 SINE B4 2 96 -128 1 1009 662 262 169 130 chr11 55576752 55577090 -66266766 + MTD LTR MaLR 10 360 -19 1 1009 225 272 55 68 chr11 55577088 55577234 -66266622 + RLTR40 LTR ERVK 62 205 -612 1 1009 267 302 78 52 chr11 55577325 55577517 -66266339 + RLTR40 LTR ERVK 372 568 -249 1 1009 285 219 36 37 chr11 55577630 55577715 -66266141 + ORR1E LTR MaLR 277 379 0 1 1009 414 0 0 0 chr11 55579157 55579203 -66264653 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1009 261 0 0 0 chr11 55579203 55579231 -66264625 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1009 229 214 32 0 chr11 55579233 55579359 -66264497 + (CAGAGA)n Simple_repeat Simple_repeat 2 131 0 1 1009 2017 142 6 58 chr11 55579706 55580050 -66263806 + ORR1A3 LTR MaLR 1 326 0 1 1009 680 250 108 11 chr11 55580171 55580357 -66263499 - ID_B1 SINE B4 -17 207 4 1 1009 543 231 0 107 chr11 55580489 55580639 -66263217 - B3A SINE B2 -64 134 1 1 1009 694 255 24 90 chr11 55580643 55580854 -66263002 - B3A SINE B2 -1 197 1 1 1009 571 301 25 45 chr11 55580874 55581076 -66262780 - B3A SINE B2 0 198 1 1 1009 337 169 0 0 chr11 55581890 55581949 -66261907 - HAL1-3A_ME LINE L1 -824 2034 1976 1 1009 259 299 13 0 chr11 55581996 55582073 -66261783 - B4A SINE B4 -210 82 5 1 1009 625 315 64 36 chr11 55582768 55583018 -66260838 + B4A SINE B4 20 276 -16 1 1009 468 0 0 0 chr11 55583027 55583079 -66260777 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1009 270 0 0 0 chr11 55583079 55583108 -66260748 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1009 1386 276 96 21 chr11 55584090 55584495 -66259361 + Lx8 LINE L1 6841 7285 -188 1 1009 1769 136 126 53 chr11 55584495 55584853 -66259003 + ORR1C2 LTR MaLR 1 384 0 1 1009 1386 276 96 21 chr11 55584853 55584914 -66258942 + Lx8 LINE L1 7286 7342 -131 1 1009 198 0 0 0 chr11 55584914 55584936 -66258920 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1009 974 234 10 0 chr11 55584940 55585141 -66258715 + B3 SINE B2 9 211 -5 1 1009 301 214 27 80 chr11 55585158 55585270 -66258586 + Lx8 LINE L1 7366 7471 -2 1 1009 785 258 15 26 chr11 55587729 55587924 -66255932 + B3A SINE B2 6 198 0 1 1009 1861 132 62 12 chr11 55588961 55589298 -66254558 + ORR1B1 LTR MaLR 41 394 0 1 1009 1033 299 52 3 chr11 55589323 55589632 -66254224 + MTEb LTR MaLR 56 379 0 1 1009 1365 242 89 31 chr11 55590633 55590991 -66252865 - MTEa LTR MaLR 0 379 1 1 1009 407 200 119 21 chr11 55591074 55591217 -66252639 - ORR1D-int LTR MaLR -34 1336 1180 1 1009 1038 39 0 0 chr11 55591222 55591349 -66252507 + (GGGAGA)n Simple_repeat Simple_repeat 4 130 0 1 1009 232 272 37 0 chr11 55591375 55591456 -66252400 + GA-rich Low_complexity Low_complexity 2 85 0 1 1009 2283 165 14 28 chr11 55591488 55591912 -66251944 - Lx2B LINE L1 -19 6981 6564 2 1009 495 0 0 0 chr11 55592293 55592348 -66251508 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1009 207 69 0 0 chr11 55592348 55592376 -66251480 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1009 1278 279 24 56 chr11 55592537 55593077 -66250779 - Lx9 LINE L1 -22 7622 7100 2 1009 443 304 26 9 chr11 55593077 55593193 -66250663 - B3A SINE B2 -11 187 70 2 1009 593 279 15 0 chr11 55593236 55593372 -66250484 - B1F1 SINE Alu -9 140 3 2 1009 212 273 15 0 chr11 55594069 55594135 -66249721 - MIR3 SINE MIR -34 174 108 2 1009 952 257 75 16 chr11 55595072 55595325 -66248531 - B4A SINE B4 -16 276 9 2 1009 1252 249 10 17 chr11 55595856 55596146 -66247710 - B4 SINE B4 -2 290 3 2 1009 450 0 0 0 chr11 55596322 55596372 -66247484 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1009 225 0 0 0 chr11 55596372 55596396 -66247460 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1009 501 32 0 0 chr11 55596953 55597016 -66246840 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2 1009 851 309 4 40 chr11 55597068 55597344 -66246512 - B4 SINE B4 -16 276 11 2 1009 423 0 0 0 chr11 55597409 55597456 -66246400 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1009 2266 151 5 21 chr11 55597523 55597896 -66245960 + ORR1B2 LTR MaLR 1 367 0 2 1009 1676 170 28 44 chr11 55598490 55598854 -66245002 + ORR1B2 LTR MaLR 2 359 -8 2 1009 295 254 0 69 chr11 55599212 55599224 -66244632 - ID4_ SINE ID -16 67 58 2 1009 3458 43 0 0 chr11 55599224 55599620 -66244236 - MTA_Mm LTR MaLR 0 396 1 2 1009 244 282 13 66 chr11 55599620 55599673 -66244183 - tRNA-Ala-GCY_ tRNA tRNA -24 51 1 2 1009 721 233 70 0 chr11 55599764 55599936 -66243920 + MTD LTR MaLR 179 362 -57 2 1009 695 271 167 44 chr11 55599940 55600042 -66243814 + ORR1D1 LTR MaLR 1 101 -273 2 1009 3872 67 10 2 chr11 55600042 55600537 -66243319 + L1_Mus1 LINE L1 6068 6566 -1 2 1009 695 271 167 44 chr11 55600537 55600637 -66243219 + ORR1D1 LTR MaLR 102 240 -134 2 1009 438 20 0 0 chr11 55600637 55600688 -66243168 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1009 695 226 170 38 chr11 55600688 55600846 -66243010 + ORR1D1 LTR MaLR 241 407 -14 2 1009 411 56 0 0 chr11 55600895 55600949 -66242907 + (TATG)n Simple_repeat Simple_repeat 4 57 0 2 1009 353 275 77 35 chr11 55600970 55601113 -66242743 - B1F SINE Alu 0 149 1 2 1009 277 309 53 0 chr11 55601145 55601239 -66242617 - RMER15 LTR ERVL -17 558 460 2 1009 316 240 72 63 chr11 55601256 55601367 -66242489 - RMER15 LTR ERVL -187 388 277 2 1009 4310 63 0 7 chr11 55601463 55602010 -66241846 - L1_Mus4 LINE L1 -4 6632 6090 2 1009 519 17 0 0 chr11 55602878 55602938 -66240918 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1009 676 275 183 9 chr11 55602938 55603162 -66240694 - B4A SINE B4 -28 264 2 2 1009 1036 246 30 4 chr11 55603952 55604176 -66239680 + B4A SINE B4 4 233 -59 2 1009 534 279 88 7 chr11 55604176 55604313 -66239543 + B3 SINE B2 1 148 -68 2 1009 495 0 0 0 chr11 55604313 55604368 -66239488 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1009 315 0 0 0 chr11 55604368 55604402 -66239454 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1009 234 354 13 0 chr11 55605880 55605959 -66237897 - MIR3 SINE MIR -48 160 81 2 1009 526 288 12 26 chr11 55606319 55606502 -66237354 - MTE2a LTR MaLR -168 251 59 2 1009 386 293 61 0 chr11 55607186 55607285 -66236571 + ID_B1 SINE B4 86 190 -34 2 1009 225 0 0 0 chr11 55607311 55607336 -66236520 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1009 2957 268 53 32 chr11 55607867 55608778 -66235078 - Lx8 LINE L1 -234 7239 6310 2 1009 2747 283 37 23 chr11 55608746 55609702 -66234154 - L1_Mur3 LINE L1 -12 5868 4900 2 1009 677 257 93 0 chr11 55609708 55609891 -66233965 - ID_B1 SINE B4 -20 204 5 2 1009 185 247 0 23 chr11 55611207 55611294 -66232562 + (TATG)n Simple_repeat Simple_repeat 2 86 0 2 1009 1015 314 29 11 chr11 55611297 55611571 -66232285 - B4 SINE B4 -2 290 12 2 1009 22 0 0 0 chr11 55612605 55612627 -66231229 + AT_rich Low_complexity Low_complexity 1 22 0 2 1009 720 281 154 22 chr11 55612927 55613251 -66230605 + RLTR28B LTR ERVL 10 376 -105 2 1009 181 365 0 0 chr11 55613616 55613690 -66230166 + MIR SINE MIR 157 230 -32 2 1009 227 333 9 61 chr11 55613830 55613945 -66229911 + PB1D7 SINE Alu 3 111 -9 2 1009 493 252 51 70 chr11 55614446 55614604 -66229252 - RSINE1 SINE B4 -2 163 9 2 1009 628 326 67 34 chr11 55615088 55615386 -66228470 - MLT1F1 LTR MaLR -5 564 257 2 1009 403 274 10 10 chr11 55615405 55615508 -66228348 - MTE2a LTR MaLR -220 159 57 2 1009 254 170 57 0 chr11 55615583 55615636 -66228220 - RMER1C Other Other -2 1340 1285 2 1009 225 171 0 0 chr11 55615641 55615676 -66228180 - RMER1C Other Other -256 1086 1052 2 1009 3657 66 4 4 chr11 55615685 55616159 -66227697 - L1_Mus2 LINE L1 -1 6565 6092 2 1009 3640 49 5 2 chr11 55616159 55616605 -66227251 + L1_Mus2 LINE L1 5629 6075 -491 2 1009 481 122 0 39 chr11 55616597 55616674 -66227182 - RMER1C Other Other -276 1066 993 2 1009 405 342 38 11 chr11 55616819 55617002 -66226854 - MER47B DNA MER2_type -162 256 69 2 1009 233 265 0 0 chr11 55617142 55617191 -66226665 + MLT2B3 LTR ERVL 1 49 -505 2 1009 734 218 126 22 chr11 55617197 55617380 -66226476 + B3 SINE B2 2 203 -13 2 1009 318 286 48 48 chr11 55617419 55617544 -66226312 + MTEb LTR MaLR 59 183 -196 2 1009 528 154 0 0 chr11 55617560 55617664 -66226192 + GA-rich Low_complexity Low_complexity 4 107 0 2 1009 252 281 70 76 chr11 55617664 55617751 -66226105 + MTEb LTR MaLR 170 258 -121 2 1009 2087 194 32 19 chr11 55617751 55618161 -66225695 + MTD LTR MaLR 5 419 0 2 1009 252 281 70 76 chr11 55618161 55618231 -66225625 + MTEb LTR MaLR 259 326 -53 2 1009 976 257 10 84 chr11 55619127 55619437 -66224419 + B4A SINE B4 6 292 0 2 1009 723 201 57 26 chr11 55619448 55619668 -66224188 + MTE2a LTR MaLR 172 405 -14 2 1009 918 230 20 5 chr11 55619843 55620044 -66223812 - B3 SINE B2 0 216 13 2 1009 522 0 0 0 chr11 55620045 55620103 -66223753 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1009 324 286 20 34 chr11 55620110 55620227 -66223629 - PB1D10 SINE Alu -2 115 2 2 1009 216 356 79 5 chr11 55620350 55620553 -66223303 - MIR SINE MIR -1 261 44 2 1009 648 285 83 20 chr11 55620678 55620932 -66222924 + B4A SINE B4 2 271 -21 2 1009 327 327 52 20 chr11 55621722 55621875 -66221981 + MTE2a LTR MaLR 6 163 -256 2 1009 421 280 40 40 chr11 55621881 55622030 -66221826 - ORR1D-int LTR MaLR -511 859 711 2 1009 518 236 86 111 chr11 55622020 55622263 -66221593 + MTE2a LTR MaLR 143 379 0 2 1009 1165 134 16 31 chr11 55622346 55622527 -66221329 + B2_Mm2 SINE B2 2 183 -12 2 1009 369 0 0 0 chr11 55622527 55622568 -66221288 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1009 1165 134 16 31 chr11 55622568 55622579 -66221277 + B2_Mm2 SINE B2 184 191 -4 2 1009 407 18 0 35 chr11 55622956 55623013 -66220843 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 1009 420 193 0 0 chr11 55623282 55623396 -66220460 + (CA)n Simple_repeat Simple_repeat 1 114 0 2 1009 1258 279 93 5 chr11 55623413 55623985 -66219871 - L1MA4A LINE L1 -427 5876 5255 2 1009 3550 234 39 64 chr11 55624009 55625085 -66218771 + ORR1E-int LTR MaLR 321 1369 -1 2 1009 646 289 136 26 chr11 55625090 55625392 -66218464 + ORR1E LTR MaLR 5 339 -20 2 1009 762 284 72 9 chr11 55625425 55625759 -66218097 - L1MA4A LINE L1 -915 5228 4874 2 1009 978 258 146 32 chr11 55625767 55626143 -66217713 - MTD LTR MaLR 0 419 1 2 1009 1444 70 16 0 chr11 55626694 55626879 -66216977 + B2_Mm2 SINE B2 2 189 -6 2 1009 565 306 18 24 chr11 55627082 55627246 -66216610 - B3A SINE B2 -35 163 1 2 1009 345 224 23 9 chr11 55628023 55628135 -66215721 - MIR SINE MIR -119 149 36 2 1009 420 354 63 54 chr11 55628983 55629204 -66214652 - B4A SINE B4 -59 233 11 2 1009 2469 112 5 64 chr11 55629516 55629954 -66213902 + RLTR1B LTR ERV1 1 412 -100 2 1009 1193 217 117 30 chr11 55630214 55630547 -66213309 - ORR1D2 LTR MaLR -5 365 4 2 1009 840 189 0 0 chr11 55631398 55631541 -66212315 + RSINE1 SINE B4 2 144 -21 2 1009 567 300 95 87 chr11 55631788 55631885 -66211971 - MTE2a LTR MaLR 0 379 284 2 1009 457 29 58 0 chr11 55631885 55631954 -66211902 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 2 1009 567 300 95 87 chr11 55631954 55632214 -66211642 - MTE2a LTR MaLR -96 283 19 2 1009 1560 152 40 245 chr11 55633013 55633543 -66210313 - Lx4B LINE L1 -777 6281 5861 2 1009 2371 123 11 16 chr11 55633541 55633904 -66209952 + Lx4B LINE L1 5501 5861 -16 2 1009 595 66 0 42 chr11 55633926 55634021 -66209835 + L1_Mus2 LINE L1 6476 6566 0 2 1009 23 0 0 0 chr11 55634026 55634049 -66209807 + AT_rich Low_complexity Low_complexity 1 23 0 2 1009 451 269 150 0 chr11 55634697 55634857 -66208999 - Lx8 LINE L1 -71 7402 7219 2 1009 602 162 0 0 chr11 55634858 55634957 -66208899 + MTC LTR MaLR 1 99 -322 2 1009 1062 82 0 0 chr11 55634978 55635124 -66208732 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 2 1009 230 116 23 0 chr11 55635124 55635167 -66208689 + (CCCCCT)n Simple_repeat Simple_repeat 3 46 0 2 1009 510 17 0 0 chr11 55635171 55635230 -66208626 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 2 1009 1079 105 0 0 chr11 55635231 55635384 -66208472 - B2_Mm2 SINE B2 -41 154 2 2 1009 1414 189 10 40 chr11 55635384 55635678 -66208178 + MTC LTR MaLR 107 391 -30 2 1009 533 291 21 0 chr11 55635914 55636055 -66207801 + RSINE1 SINE B4 3 146 -19 2 1009 369 0 0 0 chr11 55636072 55636113 -66207743 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1009 204 40 0 0 chr11 55636545 55636570 -66207286 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1009 549 275 34 40 chr11 55636591 55636739 -66207117 + RSINE1 SINE B4 3 149 -16 2 1009 360 0 0 0 chr11 55636740 55636780 -66207076 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1009 971 112 7 0 chr11 55636886 55637038 -66206818 + (TCCC)n Simple_repeat Simple_repeat 2 154 0 2 1009 658 281 69 23 chr11 55637540 55637802 -66206054 + B4A SINE B4 1 274 -18 2 1009 2242 116 19 0 chr11 55637981 55638299 -66205557 + ORR1A2 LTR MaLR 1 324 -3 2 1009 248 259 0 0 chr11 55638573 55638631 -66205225 - L1MD1 LINE L1 -207 6152 6095 2 1009 706 293 29 0 chr11 55638647 55638821 -66205035 + B3A SINE B2 4 182 -16 3 1009 423 156 0 0 chr11 55638821 55638893 -66204963 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1009 341 261 91 24 chr11 55638927 55639092 -66204764 - L1MD1 LINE L1 -208 6034 5859 2 1009 653 193 56 14 chr11 55639316 55639458 -66204398 + B3A SINE B2 4 151 -47 3 1009 510 17 0 0 chr11 55639461 55639520 -66204336 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1009 1189 257 75 13 chr11 55639780 55640232 -66203624 - L1MD1 LINE L1 -673 5686 5209 2 1009 594 274 6 19 chr11 55640502 55640658 -66203198 - RSINE1 SINE B4 -8 157 4 3 1009 430 304 69 54 chr11 55640668 55641002 -66202854 - L1MD1 LINE L1 -1773 4373 4035 2 1009 344 354 107 3 chr11 55641182 55641471 -66202385 + L2 LINE L2 2253 2571 -848 3 1009 333 0 0 0 chr11 55641609 55641646 -66202210 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1009 315 0 0 0 chr11 55641646 55641680 -66202176 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1009 734 0 12 0 chr11 55642088 55642174 -66201682 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1009 306 268 32 104 chr11 55642231 55642356 -66201500 - MTEa LTR MaLR -261 118 3 3 1009 809 297 14 53 chr11 55642813 55643097 -66200759 - B4 SINE B4 -16 276 4 3 1009 7556 117 8 2 chr11 55643304 55644828 -66199028 - L1_Mus4 LINE L1 0 6636 5099 3 1009 41604 12 1 6 chr11 55644828 55651025 -66192831 - L1Md_A LINE L1 0 6582 422 3 1009 22950 146 19 11 chr11 55651021 55655560 -66188296 - L1_Mus4 LINE L1 -765 5118 546 3 1009 573 15 0 0 chr11 55655877 55655943 -66187913 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1009 966 258 117 19 chr11 55656041 55656357 -66187499 - Lx8 LINE L1 -326 7147 6801 3 1009 527 112 10 0 chr11 55657149 55657247 -66186609 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1009 970 267 123 35 chr11 55657503 55657876 -66185980 - MTC LTR MaLR -15 406 1 3 1009 270 0 0 0 chr11 55658297 55658327 -66185529 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1009 574 248 106 55 chr11 55658356 55658629 -66185227 - B4A SINE B4 -2 290 4 3 1009 807 226 85 20 chr11 55658896 55659095 -66184761 + B3 SINE B2 5 216 0 3 1009 273 264 27 14 chr11 55659183 55659256 -66184600 + B4A SINE B4 193 266 -26 3 1009 579 66 0 0 chr11 55659280 55659356 -66184500 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1009 421 319 94 16 chr11 55659936 55660127 -66183729 - MER20 DNA MER1_type -13 206 1 3 1009 573 165 0 0 chr11 55660308 55660429 -66183427 + GA-rich Low_complexity Low_complexity 1 121 0 3 1009 6574 50 7 2 chr11 55660958 55661765 -66182091 + L1Md_F2 LINE L1 5771 6581 -1 3 1009 777 286 0 0 chr11 55662025 55662193 -66181663 - B3A SINE B2 -30 168 1 3 1009 252 0 0 0 chr11 55662221 55662249 -66181607 + (CAAAG)n Simple_repeat Simple_repeat 1 28 0 3 1009 246 316 102 0 chr11 55662337 55662435 -66181421 + MLT1A1 LTR MaLR 21 128 -280 3 1009 361 339 26 86 chr11 55662470 55662713 -66181143 + ORR1E LTR MaLR 75 298 -61 3 1009 1852 174 88 6 chr11 55662713 55663077 -66180779 - ORR1B1 LTR MaLR 0 394 1 3 1009 361 339 26 86 chr11 55663077 55663136 -66180720 + ORR1E LTR MaLR 299 359 0 3 1009 184 255 44 62 chr11 55663345 55663458 -66180398 - L3 LINE CR1 -1857 2632 2522 3 1009 535 275 35 92 chr11 55663466 55663750 -66180106 - Lx8 LINE L1 -2 7471 7204 3 1009 494 244 31 184 chr11 55665127 55665388 -66178468 - MTE2a LTR MaLR -144 235 15 3 1009 2058 257 112 26 chr11 55665410 55666214 -66177642 + RCHARR1 DNA MER1_type 11 884 -90 3 1009 1020 283 81 26 chr11 55666214 55666598 -66177258 + MTD LTR MaLR 1 405 -14 3 1009 252 21 61 41 chr11 55666716 55666765 -66177091 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 3 1009 1011 161 0 0 chr11 55666824 55667004 -66176852 + CT-rich Low_complexity Low_complexity 1 180 0 3 1009 1129 95 0 0 chr11 55667004 55667151 -66176705 - B1_Mus1 SINE Alu -1 147 1 3 1009 955 234 209 7 chr11 55667422 55667728 -66176128 + MTE2a LTR MaLR 12 379 0 3 1009 464 53 87 17 chr11 55667897 55668012 -66175844 + A-rich Low_complexity Low_complexity 1 123 0 3 1009 998 252 9 13 chr11 55668414 55668639 -66175217 + ID_B1 SINE B4 1 224 0 3 1009 679 259 70 11 chr11 55668788 55668975 -66174881 - B3A SINE B2 0 198 1 3 1009 326 309 7 61 chr11 55669178 55669326 -66174530 - L1MA4 LINE L1 -368 5932 5793 3 1009 3324 48 0 8 chr11 55669356 55669755 -66174101 - MTA_Mm LTR MaLR 0 396 1 3 1009 352 23 0 0 chr11 55669760 55669804 -66174052 - HAL1-3A_ME LINE L1 -835 2023 1980 3 1009 722 243 35 0 chr11 55669805 55669978 -66173878 - B3A SINE B2 -18 180 2 3 1009 780 263 77 49 chr11 55669990 55670361 -66173495 - L1MA4 LINE L1 -521 5776 5417 3 1009 595 265 4 137 chr11 55670361 55670588 -66173268 - B3A SINE B2 -1 197 1 3 1009 633 315 130 51 chr11 55670588 55671266 -66172590 - L1MA4 LINE L1 -868 5429 4682 3 1009 3829 86 123 0 chr11 55671440 55671975 -66171881 - MT2B LTR ERVL 0 601 1 3 1009 666 363 33 4 chr11 55672223 55672494 -66171362 - B4A SINE B4 -8 284 6 3 1009 303 384 7 0 chr11 55673214 55673352 -66170504 - MIR SINE MIR -116 146 8 3 1009 663 66 0 0 chr11 55673426 55673517 -66170339 + B1_Mm SINE Alu 57 147 0 3 1009 251 308 0 0 chr11 55674504 55674569 -66169287 - RMER15 LTR ERVL -108 467 403 3 1009 986 302 3 52 chr11 55675503 55675810 -66168046 - B4A SINE B4 0 292 1 3 1009 958 178 183 0 chr11 55675905 55676096 -66167760 - URR1A DNA MER1_type 0 226 1 3 1009 974 269 21 71 chr11 55676324 55676664 -66167192 - Lx8 LINE L1 -35 7438 7116 3 1009 2300 125 6 0 chr11 55677414 55677741 -66166115 + ORR1A4 LTR MaLR 1 329 0 3 1009 876 273 69 4 chr11 55677794 55678026 -66165830 + B4A SINE B4 1 247 -45 3 1009 545 310 129 12 chr11 55678044 55678299 -66165557 - RMER15 LTR ERVL -16 559 275 3 1009 207 186 0 23 chr11 55678470 55678514 -66165342 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1009 807 11 0 0 chr11 55678525 55678617 -66165239 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 1009 479 296 64 0 chr11 55679074 55679199 -66164657 + B1F SINE Alu 5 137 -12 3 1009 186 396 19 0 chr11 55679821 55679927 -66163929 + L2c LINE L2 3096 3203 -184 3 1009 586 218 188 11 chr11 55680182 55680358 -66163498 - B3 SINE B2 -6 210 4 3 1009 481 30 30 0 chr11 55681168 55681235 -66162621 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1009 590 212 0 0 chr11 55681241 55681340 -66162516 - PB1D9 SINE Alu -19 101 3 3 1009 807 266 46 82 chr11 55681936 55682239 -66161617 - B4 SINE B4 0 292 1 3 1009 602 347 10 0 chr11 55682289 55682482 -66161374 - Lx8 LINE L1 -247 7226 7032 3 1009 1558 202 64 28 chr11 55682791 55683152 -66160704 - ORR1D1 LTR MaLR 0 374 1 3 1009 4315 77 50 0 chr11 55684093 55684678 -66159178 + Lx3_Mus LINE L1 6396 7009 0 3 1009 438 294 11 124 chr11 55684903 55685089 -66158767 - Lx8 LINE L1 -202 7271 7107 3 1009 1358 109 0 5 chr11 55685181 55685374 -66158482 - B2_Mm2 SINE B2 -1 194 3 3 1009 387 110 0 27 chr11 55685623 55685698 -66158158 - L1Md_F2 LINE L1 0 6582 6510 3 1009 681 306 78 56 chr11 55686267 55686624 -66157232 - MTD LTR MaLR -54 365 1 3 1009 1185 253 124 11 chr11 55687048 55687306 -66156550 + Lx8 LINE L1 7058 7328 -145 3 1009 270 81 0 0 chr11 55687306 55687343 -66156513 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 3 1009 1185 253 124 11 chr11 55687343 55687456 -66156400 + Lx8 LINE L1 7329 7470 -3 3 1009 1079 183 134 44 chr11 55687706 55688009 -66155847 + IAPEY3_LTR LTR ERVK 1 383 -2 3 1009 318 156 0 0 chr11 55688392 55688456 -66155400 + (TGAA)n Simple_repeat Simple_repeat 3 66 0 3 1009 220 302 0 16 chr11 55688781 55688909 -66154947 + (CATATA)n Simple_repeat Simple_repeat 3 128 0 3 1009 985 270 8 15 chr11 55689179 55689446 -66154410 + MTEa LTR MaLR 115 379 0 3 1009 1469 211 133 25 chr11 55689601 55689999 -66153857 - RLTR20B3 LTR ERVK -56 521 81 3 1009 320 310 35 25 chr11 55690037 55690193 -66153663 - B4 SINE B4 -4 161 1 3 1009 250 370 0 0 chr11 55690680 55690772 -66153084 - MLT1K LTR MaLR -178 417 326 3 1009 209 180 0 20 chr11 55691833 55691884 -66151972 + CT-rich Low_complexity Low_complexity 2 51 0 3 1009 461 245 0 0 chr11 55692584 55692686 -66151170 - ID_B1 SINE B4 -21 203 102 3 1009 245 263 77 26 chr11 55692972 55693050 -66150806 + MIR SINE MIR 42 123 -85 3 1009 194 128 26 0 chr11 55693211 55693250 -66150606 + CT-rich Low_complexity Low_complexity 4 43 0 3 1009 553 283 139 28 chr11 55693314 55693565 -66150291 - B4 SINE B4 -12 280 2 3 1009 4099 176 93 10 chr11 55694266 55695071 -66148785 + Lx2B LINE L1 6127 6998 -2 3 1009 201 182 23 0 chr11 55695254 55695298 -66148558 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 3 1009 789 255 70 134 chr11 55695306 55695408 -66148448 - RMER5 LTR ERV1 -48 486 392 3 1009 288 0 0 0 chr11 55695408 55695440 -66148416 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3 1009 789 255 70 134 chr11 55695440 55695566 -66148290 - RMER5 LTR ERV1 -143 391 259 3 1009 1041 150 0 0 chr11 55695566 55695746 -66148110 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1009 702 82 0 0 chr11 55695749 55695847 -66148009 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 3 1009 1079 99 0 0 chr11 55695849 55695991 -66147865 - B1_Mus1 SINE Alu -6 142 1 3 1009 789 255 70 134 chr11 55695991 55696239 -66147617 - RMER5 LTR ERV1 -276 258 33 3 1009 278 207 0 0 chr11 55696497 55696555 -66147301 + MTEb LTR MaLR 111 168 -211 3 1009 487 345 48 36 chr11 55696524 55696861 -66146995 - MLT1A LTR MaLR -31 343 3 3 1009 514 349 57 27 chr11 55697016 55697384 -66146472 + MLT1C LTR MaLR 79 457 -10 3 1009 1254 216 139 3 chr11 55697509 55697853 -66146003 + MTD LTR MaLR 15 405 -14 3 1009 342 238 38 38 chr11 55697938 55698043 -66145813 - B1F2 SINE Alu -32 117 13 3 1009 341 51 0 48 chr11 55698063 55698125 -66145731 - L1Md_F2 LINE L1 -1 6581 6523 3 1009 620 59 12 0 chr11 55698147 55698232 -66145624 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 4 1009 281 306 106 12 chr11 55698244 55698489 -66145367 - L1MEf LINE L1 -783 5363 5096 4 1009 203 55 0 53 chr11 55698660 55698698 -66145158 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1009 366 258 116 18 chr11 55698940 55699118 -66144738 - L1MEf LINE L1 -4845 1397 1192 4 1009 475 298 24 68 chr11 55699697 55699902 -66143954 + RMER30 DNA MER1_type 5 200 -2 4 1009 691 275 95 0 chr11 55699999 55700199 -66143657 + ID_B1 SINE B4 6 224 0 4 1009 289 200 52 26 chr11 55701216 55701293 -66142563 - MLT1A LTR MaLR -265 109 31 4 1009 413 303 0 9 chr11 55701873 55702055 -66141801 - HAL1-2a_MD LINE L1 -517 2507 2345 4 1009 36 53 0 0 chr11 55702225 55702282 -66141574 + AT_rich Low_complexity Low_complexity 1 57 0 4 1009 642 237 63 9 chr11 55702287 55702552 -66141304 + L1MB4 LINE L1 5199 5475 -703 4 1009 568 228 135 19 chr11 55702545 55702760 -66141096 + L1MB4 LINE L1 5909 6148 -32 4 1009 866 315 70 0 chr11 55703003 55703273 -66140583 + B4A SINE B4 2 290 -2 4 1009 378 220 0 0 chr11 55703294 55703394 -66140462 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 1009 399 21 0 0 chr11 55703522 55703570 -66140286 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1009 180 0 0 0 chr11 55703686 55703706 -66140150 + (TGG)n Simple_repeat Simple_repeat 2 21 0 4 1009 468 317 43 14 chr11 55704433 55704644 -66139212 + RMER15 LTR ERVL 352 568 -7 4 1009 301 303 150 42 chr11 55705116 55705142 -66138714 - B3 SINE B2 0 216 3 4 1009 682 271 0 48 chr11 55705142 55705309 -66138547 - RSINE1 SINE B4 -3 162 4 4 1010 217 312 47 0 chr11 55705940 55706004 -66137852 + L2b LINE L2 3308 3374 -1 4 1010 479 231 0 0 chr11 55706999 55707090 -66136766 + ID_B1 SINE B4 111 201 -23 4 1010 28 0 0 0 chr11 55707723 55707751 -66136105 + AT_rich Low_complexity Low_complexity 1 28 0 4 1010 358 257 43 60 chr11 55707777 55707893 -66135963 + RSINE1 SINE B4 43 156 -9 4 1010 216 0 0 0 chr11 55707905 55707929 -66135927 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1010 312 27 0 0 chr11 55708198 55708235 -66135621 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 4 1010 384 40 0 0 chr11 55708293 55708343 -66135513 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1010 234 0 0 0 chr11 55709270 55709296 -66134560 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 4 1010 333 68 0 0 chr11 55709296 55709340 -66134516 + (TTC)n Simple_repeat Simple_repeat 3 46 0 4 1010 402 21 0 0 chr11 55709340 55709387 -66134469 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1010 877 258 28 53 chr11 55709446 55709728 -66134128 - B4 SINE B4 -14 278 4 4 1010 211 158 0 26 chr11 55709744 55709783 -66134073 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4 1010 945 260 40 23 chr11 55710031 55710334 -66133522 + RMER5 LTR ERV1 198 505 -29 4 1010 23 0 0 0 chr11 55711619 55711642 -66132214 + AT_rich Low_complexity Low_complexity 1 23 0 4 1010 3654 30 121 0 chr11 55711817 55712257 -66131599 - MT2_Mm LTR ERVL 0 493 1 4 1010 510 241 25 17 chr11 55713097 55713215 -66130641 + PB1D7 SINE Alu 2 120 0 4 1010 194 291 45 34 chr11 55713523 55713612 -66130244 + MIR SINE MIR 114 203 -59 4 1010 468 0 0 0 chr11 55714904 55714956 -66128900 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1010 264 309 23 122 chr11 55715610 55715824 -66128032 + MER46C DNA MER2_type 32 224 -114 4 1010 1350 75 4 0 chr11 55716442 55716712 -66127144 + (TTC)n Simple_repeat Simple_repeat 1 270 0 4 1010 605 275 174 76 chr11 55717176 55717440 -66126416 + B4 SINE B4 3 292 0 4 1010 528 302 10 26 chr11 55717955 55718149 -66125707 - B3A SINE B2 -6 192 2 4 1010 1057 270 30 35 chr11 55718279 55718647 -66125209 - L1MB1 LINE L1 -204 5964 5599 4 1010 1089 269 138 25 chr11 55718665 55719306 -66124550 - Lx8 LINE L1 -5 7468 6756 4 1010 506 300 41 34 chr11 55719311 55719604 -66124252 - L1MB1 LINE L1 -557 5611 5317 4 1010 26 0 0 0 chr11 55719604 55719630 -66124226 + AT_rich Low_complexity Low_complexity 1 26 0 4 1010 234 217 0 0 chr11 55719764 55719810 -66124046 + PB1D7 SINE Alu 73 118 -2 4 1010 29 78 0 0 chr11 55719812 55719876 -66123980 + AT_rich Low_complexity Low_complexity 1 64 0 4 1010 311 294 0 21 chr11 55720214 55720308 -66123548 + CT-rich Low_complexity Low_complexity 6 97 0 4 1010 249 328 0 0 chr11 55720335 55720399 -66123457 - ID4_ SINE ID -15 68 5 4 1010 397 192 39 0 chr11 55720425 55720503 -66123353 - ID4_ SINE ID -1 82 2 4 1010 456 256 208 9 chr11 55721183 55721404 -66122452 - Lx8 LINE L1 -4 7469 7205 4 1010 332 286 12 0 chr11 55721390 55721474 -66122382 + Lx8 LINE L1 7103 7187 -286 4 1010 239 206 27 81 chr11 55721843 55721991 -66121865 - Lx9 LINE L1 -2 7642 7503 4 1010 387 0 0 0 chr11 55721995 55722038 -66121818 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1010 314 324 11 11 chr11 55723289 55723464 -66120392 + (TGG)n Simple_repeat Simple_repeat 1 175 0 4 1010 747 256 32 170 chr11 55723556 55723998 -66119858 - MLT1B LTR MaLR -2 388 8 4 1010 299 150 17 0 chr11 55724236 55724296 -66119560 + CT-rich Low_complexity Low_complexity 4 64 0 4 1010 311 346 77 16 chr11 55724464 55724658 -66119198 - MIR SINE MIR -29 233 28 4 1010 442 240 80 0 chr11 55724815 55724915 -66118941 + PB1D10 SINE Alu 8 115 -2 4 1010 454 228 0 5 chr11 55724915 55725014 -66118842 + ID4 SINE ID 2 97 -55 4 1010 557 76 0 11 chr11 55725297 55725390 -66118466 + (TTTG)n Simple_repeat Simple_repeat 2 93 0 4 1010 522 0 0 0 chr11 55726455 55726513 -66117343 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1010 601 291 42 34 chr11 55726715 55726953 -66116903 - RMER15 LTR ERVL 0 575 336 4 1010 248 269 0 13 chr11 55727401 55727480 -66116376 - L1MA4 LINE L1 -359 5941 5864 4 1010 275 207 81 0 chr11 55727507 55727594 -66116262 + Lx7 LINE L1 5739 5832 -1864 4 1010 251 196 0 0 chr11 55727619 55727665 -66116191 + L1MA4 LINE L1 5543 5588 -703 4 1010 273 119 0 0 chr11 55727761 55727803 -66116053 + (CAAG)n Simple_repeat Simple_repeat 1 42 0 4 1010 584 321 81 31 chr11 55727804 55728187 -66115669 + L1MA4 LINE L1 5594 5995 -305 4 1010 26 30 0 0 chr11 55729576 55729609 -66114247 + AT_rich Low_complexity Low_complexity 1 33 0 4 1010 580 275 24 90 chr11 55729648 55729860 -66113996 + B3A SINE B2 1 198 0 4 1010 392 311 68 53 chr11 55729906 55730113 -66113743 - MIRb SINE MIR -33 235 26 4 1010 339 317 29 0 chr11 55730113 55730217 -66113639 + PB1D9 SINE Alu 1 107 -13 4 1010 282 115 0 0 chr11 55730233 55730285 -66113571 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 4 1010 278 360 14 14 chr11 55733673 55733811 -66110045 - MIRb SINE MIR -64 204 67 4 1010 22 0 0 0 chr11 55734053 55734075 -66109781 + AT_rich Low_complexity Low_complexity 1 22 0 4 1010 22 0 0 0 chr11 55734142 55734164 -66109692 + AT_rich Low_complexity Low_complexity 1 22 0 4 1010 916 153 0 22 chr11 55734260 55734441 -66109415 + GA-rich Low_complexity Low_complexity 1 177 0 4 1010 24 0 0 0 chr11 55734677 55734701 -66109155 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 1255 89 16 10 chr11 55735027 55735220 -66108636 + B2_Mm2 SINE B2 2 195 0 4 1010 353 353 51 23 chr11 55735230 55735407 -66108449 + MIR SINE MIR 57 238 -24 4 1010 438 20 0 0 chr11 55735649 55735700 -66108156 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1010 578 293 18 18 chr11 55735706 55735873 -66107983 - B3A SINE B2 -26 172 6 4 1010 995 234 219 10 chr11 55735881 55736187 -66107669 - ORR1D2 LTR MaLR 0 370 1 4 1010 371 311 43 78 chr11 55736814 55737069 -66106787 - Lx8 LINE L1 -11 7462 7217 4 1010 1257 18 25 0 chr11 55737141 55737304 -66106552 + (TCTA)n Simple_repeat Simple_repeat 2 168 0 4 1010 219 167 0 0 chr11 55737681 55737723 -66106133 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1010 975 215 202 4 chr11 55737723 55737966 -66105890 - B4 SINE B4 0 292 2 4 1010 1081 97 7 0 chr11 55738250 55738395 -66105461 - B1_Mus2 SINE Alu -1 146 1 4 1010 321 318 52 22 chr11 55738662 55738797 -66105059 - ID_B1 SINE B4 -3 221 83 4 1010 288 0 0 0 chr11 55739305 55739337 -66104519 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1010 280 319 0 21 chr11 55739731 55739824 -66104032 - L3 LINE CR1 -74 4415 4325 4 1010 653 215 171 17 chr11 55740710 55740885 -66102971 - B3 SINE B2 -11 205 4 4 1010 268 189 72 0 chr11 55741000 55741069 -66102787 - MTEa LTR MaLR -21 358 267 4 1010 713 242 10 132 chr11 55741190 55741485 -66102371 - RMER15 LTR ERVL -42 533 275 4 1010 415 220 29 39 chr11 55741686 55741790 -66102066 - B4A SINE B4 -116 176 74 4 1010 343 325 58 69 chr11 55742963 55743224 -66100632 + L2 LINE L2 2793 3050 -369 4 1010 1155 82 0 0 chr11 55743531 55743677 -66100179 - B1_Mm SINE Alu 0 147 2 4 1010 318 326 62 17 chr11 55743680 55743858 -66099998 - MIR SINE MIR -5 257 72 4 1010 213 163 23 0 chr11 55743890 55743933 -66099923 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 1010 199 0 31 31 chr11 55743943 55743975 -66099881 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1010 999 282 29 64 chr11 55743976 55744321 -66099535 - ORR1E LTR MaLR -20 339 7 4 1010 486 0 0 0 chr11 55744931 55744985 -66098871 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1010 180 0 0 0 chr11 55744985 55745004 -66098852 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1010 466 285 136 23 chr11 55745712 55745888 -66097968 - B3A SINE B2 -1 197 2 4 1010 192 298 23 23 chr11 55745903 55745989 -66097867 - MIRb SINE MIR -63 205 120 4 1010 604 281 30 0 chr11 55746052 55746216 -66097640 - ID_B1 SINE B4 -7 217 49 4 1010 203 39 36 73 chr11 55746278 55746333 -66097523 + (TTTTTG)n Simple_repeat Simple_repeat 4 56 0 5 1010 567 236 57 62 chr11 55746396 55746572 -66097284 - B3 SINE B2 -13 203 29 5 1010 1854 190 173 47 chr11 55747443 55747952 -66095904 - RMER15 LTR ERVL 0 575 3 5 1010 265 291 85 28 chr11 55748120 55748226 -66095630 - MER117 DNA MER1_type -37 160 49 5 1010 217 286 81 10 chr11 55749329 55749428 -66094428 + MIR SINE MIR 126 231 -31 5 1010 413 256 24 55 chr11 55750228 55750393 -66093463 + HAL1-2a_MD LINE L1 2343 2502 -522 5 1010 427 312 63 14 chr11 55751864 55752007 -66091849 + B3A SINE B2 2 151 -47 5 1010 531 0 0 0 chr11 55752015 55752074 -66091782 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1010 239 243 135 0 chr11 55752095 55752169 -66091687 - MER103 DNA DNA -73 93 10 5 1010 555 194 155 0 chr11 55752248 55752377 -66091479 - MTE2a LTR MaLR 0 379 231 5 1010 308 136 34 0 chr11 55752408 55752467 -66091389 + GA-rich Low_complexity Low_complexity 4 64 0 5 1010 546 193 64 170 chr11 55752499 55752717 -66091139 - MTE2a LTR MaLR -183 196 2 5 1010 295 263 78 35 chr11 55752862 55753004 -66090852 + MLT1A1 LTR MaLR 9 156 -252 5 1010 436 228 102 24 chr11 55753006 55753172 -66090684 + L1M2 LINE L1 5143 5321 -822 5 1010 4873 69 0 0 chr11 55755078 55755690 -66088166 - L1_Mus2 LINE L1 0 6566 5955 5 1010 536 227 36 9 chr11 55755789 55755900 -66087956 - ID_B1 SINE B4 -2 222 109 5 1010 421 293 0 15 chr11 55755973 55756098 -66087758 + PB1D7 SINE Alu 6 124 -23 5 1010 531 198 48 24 chr11 55756980 55757104 -66086752 + RSINE1 SINE B4 1 127 -38 5 1010 465 19 0 0 chr11 55757115 55757169 -66086687 + (CATA)n Simple_repeat Simple_repeat 3 56 0 5 1010 26 30 0 0 chr11 55757172 55757205 -66086651 + AT_rich Low_complexity Low_complexity 1 33 0 5 1010 210 242 136 0 chr11 55759043 55759109 -66084747 + ID2 SINE ID 1 75 -8 5 1010 261 0 0 0 chr11 55759206 55759235 -66084621 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 5 1010 908 268 181 20 chr11 55761025 55761429 -66082427 - MER31A LTR ERV1 -4 481 13 5 1010 190 29 0 81 chr11 55761575 55761612 -66082244 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1010 392 251 40 169 chr11 55762050 55762307 -66081549 - MTEb LTR MaLR -7 372 120 5 1010 731 286 148 16 chr11 55762462 55762718 -66081138 - B4 SINE B4 0 292 3 5 1010 477 234 72 14 chr11 55763316 55763455 -66080401 - B3A SINE B2 -50 148 2 5 1010 1142 52 0 0 chr11 55763733 55763868 -66079988 + B1_Mm SINE Alu 1 135 -12 5 1010 711 65 0 0 chr11 55763868 55763961 -66079895 + (GAAA)n Simple_repeat Simple_repeat 1 93 0 5 1010 276 30 0 0 chr11 55764425 55764458 -66079398 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1010 645 80 0 0 chr11 55765057 55765145 -66078711 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1010 2063 276 21 43 chr11 55765231 55765902 -66077954 - Lx9 LINE L1 -321 7323 6668 5 1010 1445 296 35 69 chr11 55765904 55766891 -66076965 + Lx8 LINE L1 5553 6525 -948 5 1010 306 0 0 0 chr11 55767564 55767598 -66076258 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1010 650 284 81 15 chr11 55767603 55767800 -66076056 - B4 SINE B4 0 292 83 5 1010 14738 62 8 3 chr11 55767812 55770373 -66073483 - L1Md_F2 LINE L1 0 6582 4007 5 1010 1107 223 160 3 chr11 55770465 55770784 -66073072 - ORR1D2 LTR MaLR -1 369 1 5 1010 219 322 80 32 chr11 55770817 55770942 -66072914 + MIRb SINE MIR 34 164 -104 5 1010 640 286 22 22 chr11 55771079 55771257 -66072599 + MTEa LTR MaLR 1 178 -201 5 1010 480 297 90 0 chr11 55771257 55771401 -66072455 + B3A SINE B2 2 159 -39 5 1010 195 69 0 0 chr11 55771401 55771430 -66072426 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1010 858 222 19 24 chr11 55771458 55771670 -66072186 + MTEa LTR MaLR 169 379 0 5 1010 200 164 29 29 chr11 55772265 55772334 -66071522 + CT-rich Low_complexity Low_complexity 1 69 0 5 1010 521 246 52 0 chr11 55772951 55773085 -66070771 - ID_B1 SINE B4 -1 223 83 5 1010 288 0 0 0 chr11 55773101 55773133 -66070723 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1010 480 265 60 0 chr11 55773446 55773612 -66070244 - MER5B DNA MER1_type 0 178 3 5 1010 1187 249 53 25 chr11 55773783 55774168 -66069688 - MTE2a LTR MaLR 0 379 16 5 1010 1341 259 21 39 chr11 55775188 55775574 -66068282 + MTEa LTR MaLR 1 379 0 5 1010 324 0 0 0 chr11 55776143 55776179 -66067677 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1010 2948 124 45 58 chr11 55776667 55776780 -66067076 + RLTR28 LTR ERVL 1 94 -430 5 1010 1204 61 0 0 chr11 55776780 55776928 -66066928 - B1_Mus1 SINE Alu 0 148 1 5 1010 2948 124 45 58 chr11 55776928 55777345 -66066511 + RLTR28 LTR ERVL 95 524 0 5 1010 825 318 28 31 chr11 55777673 55778033 -66065823 - ORR1E LTR MaLR 0 359 1 5 1010 777 288 100 31 chr11 55778237 55778448 -66065408 + MTD LTR MaLR 1 221 -198 5 1010 405 0 0 0 chr11 55778448 55778493 -66065363 + (CAAG)n Simple_repeat Simple_repeat 4 48 0 5 1010 777 288 100 31 chr11 55778493 55778632 -66065224 + MTD LTR MaLR 222 375 -44 5 1010 292 291 108 16 chr11 55778728 55778857 -66064999 - MIRc SINE MIR -118 150 10 5 1010 1566 237 89 0 chr11 55779550 55779930 -66063926 - MTD LTR MaLR 0 419 6 5 1010 408 40 0 0 chr11 55779983 55780033 -66063823 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1010 220 324 0 0 chr11 55780548 55780619 -66063237 + CT-rich Low_complexity Low_complexity 1 71 0 5 1010 258 105 0 0 chr11 55780626 55780664 -66063192 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1010 544 346 5 0 chr11 55780950 55781135 -66062721 + MER58A DNA MER1_type 15 200 -24 5 1010 811 281 69 55 chr11 55781334 55781681 -66062175 + ORR1E LTR MaLR 1 352 -7 5 1010 235 325 114 25 chr11 55781876 55782078 -66061778 - L1M5 LINE L1 -274 5899 5680 5 1010 580 226 8 8 chr11 55782081 55782203 -66061653 + ID_B1 SINE B4 85 206 -18 5 1010 1059 262 80 23 chr11 55782203 55782595 -66061261 + MTE2b LTR MaLR 1 405 -14 5 1010 352 346 113 12 chr11 55782939 55783258 -66060598 - L1M5 LINE L1 -822 5324 4974 5 1010 260 264 60 90 chr11 55783470 55783516 -66060340 + PB1 SINE Alu 14 59 -68 5 1010 1220 183 9 26 chr11 55783516 55783746 -66060110 + URR1A DNA MER1_type 1 226 0 5 1010 260 264 60 90 chr11 55783746 55783799 -66060057 + PB1 SINE Alu 60 110 -17 5 1010 623 285 7 0 chr11 55784011 55784148 -66059708 - ID_B1 SINE B4 -4 220 83 5 1010 2307 274 30 36 chr11 55784426 55785156 -66058700 - Lx9 LINE L1 -174 7470 6745 5 1010 320 330 63 42 chr11 55785316 55785743 -66058113 - L1M5 LINE L1 -1494 4652 4217 5 1010 594 0 0 0 chr11 55786003 55786069 -66057787 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 5 1010 371 251 15 107 chr11 55786101 55786250 -66057606 - B3A SINE B2 -11 205 73 5 1010 199 350 111 7 chr11 55786496 55786640 -66057216 - MIR SINE MIR -87 175 17 5 1010 749 299 64 70 chr11 55786697 55787024 -66056832 - ORR1E LTR MaLR -34 325 1 5 1010 285 347 43 43 chr11 55787267 55787520 -66056336 + MIRc SINE MIR 14 266 -2 5 1010 255 93 0 0 chr11 55788466 55788509 -66055347 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1010 207 345 52 29 chr11 55788600 55788773 -66055083 + MER5B DNA MER1_type 2 178 0 5 1010 474 331 0 19 chr11 55789632 55789792 -66054064 - RSINE1 SINE B4 -6 159 3 5 1010 362 250 38 0 chr11 55789854 55789934 -66053922 - ID4_ SINE ID 0 83 1 5 1010 473 47 16 0 chr11 55789940 55790004 -66053852 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 1010 1437 278 109 13 chr11 55790884 55791350 -66052506 - Lx8 LINE L1 -3 7470 6960 5 1010 435 306 0 0 chr11 55792660 55792771 -66051085 + B4 SINE B4 3 113 -179 5 1010 4943 83 18 2 chr11 55792779 55793463 -66050393 - L1_Mus4 LINE L1 -386 6250 5552 5 1010 3004 66 5 2 chr11 55793464 55793859 -66049997 + L1_Mus4 LINE L1 6240 6635 -1 5 1010 532 216 0 75 chr11 55794334 55794454 -66049402 - ID_B1 SINE B4 -24 200 90 5 1010 1034 125 155 5 chr11 55795047 55795240 -66048616 - URR1A DNA MER1_type 0 226 5 5 1010 279 232 29 0 chr11 55795839 55795908 -66047948 - B4 SINE B4 -211 81 11 5 1010 923 270 73 25 chr11 55795971 55796286 -66047570 + Lx7 LINE L1 7088 7417 -279 5 1010 356 335 0 72 chr11 55796790 55796970 -66046886 + MIRc SINE MIR 58 224 -44 5 1010 596 303 14 59 chr11 55796986 55797207 -66046649 + B4A SINE B4 2 212 -80 5 1010 1279 187 142 30 chr11 55797210 55797541 -66046315 + ORR1D1 LTR MaLR 7 374 0 5 1010 288 77 0 0 chr11 55797621 55797660 -66046196 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1010 180 308 36 63 chr11 55797777 55797888 -66045968 + MIR SINE MIR 10 117 -145 5 1010 1570 223 58 28 chr11 55798735 55799071 -66044785 + MTD LTR MaLR 11 363 -56 5 1010 3450 43 0 0 chr11 55799071 55799467 -66044389 + MTA_Mm LTR MaLR 1 396 0 5 1010 1570 223 58 28 chr11 55799467 55799527 -66044329 + MTD LTR MaLR 364 419 0 5 1010 796 280 39 58 chr11 55800251 55800652 -66043204 - RLTR26 LTR ERVK -225 417 1 5 1010 210 185 74 0 chr11 55800722 55800776 -66043080 + B1F1 SINE Alu 32 89 -60 5 1010 197 364 22 11 chr11 55800898 55800987 -66042869 - MIR3 SINE MIR -51 157 68 5 1010 1309 262 21 39 chr11 55802603 55802984 -66040872 - MTE2b LTR MaLR -3 376 3 5 1010 23 0 0 0 chr11 55803055 55803078 -66040778 + AT_rich Low_complexity Low_complexity 1 23 0 5 1010 741 272 65 58 chr11 55803102 55803379 -66040477 + B4A SINE B4 14 292 0 5 1010 549 0 0 0 chr11 55803563 55803624 -66040232 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1010 559 231 29 15 chr11 55804182 55804318 -66039538 - B1F SINE Alu -11 138 1 5 1010 1286 156 161 93 chr11 55804376 55804730 -66039126 - ORR1C1 LTR MaLR 0 378 1 5 1010 468 0 0 0 chr11 55804911 55804963 -66038893 + (TTG)n Simple_repeat Simple_repeat 2 53 0 5 1010 415 252 0 18 chr11 55806440 55806549 -66037307 + ORR1E LTR MaLR 5 111 -248 6 1010 227 330 94 17 chr11 55807062 55807179 -66036677 + MIRb SINE MIR 118 243 -25 6 1010 331 180 33 0 chr11 55807382 55807443 -66036413 + B3A SINE B2 4 66 -132 6 1010 420 250 32 24 chr11 55807515 55807638 -66036218 + B3A SINE B2 57 180 -18 6 1010 2045 188 40 15 chr11 55807640 55808040 -66035816 + MTD LTR MaLR 2 411 -8 6 1010 228 342 183 0 chr11 55808916 55809036 -66034820 - MER2B DNA MER2_type -5 331 190 6 1010 845 263 52 65 chr11 55809094 55809482 -66034374 - MTE2a LTR MaLR -14 405 18 6 1010 498 75 0 0 chr11 55809535 55809602 -66034254 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1010 228 374 0 0 chr11 55809685 55809776 -66034080 - MER2B DNA MER2_type -165 171 81 6 1010 255 238 94 12 chr11 55809885 55809970 -66033886 - MLT2B4 LTR ERVL -59 497 406 6 1010 290 328 92 0 chr11 55809988 55810119 -66033737 - MLT2B4 LTR ERVL -344 212 70 6 1010 287 308 11 32 chr11 55810301 55810395 -66033461 - B4A SINE B4 -74 218 127 6 1010 956 220 35 0 chr11 55811705 55811905 -66031951 - B3 SINE B2 -6 210 4 6 1010 296 288 25 0 chr11 55813532 55813612 -66030244 + L2a LINE L2 3344 3425 -1 6 1010 760 302 23 31 chr11 55813790 55814050 -66029806 - B4A SINE B4 -14 278 21 6 1010 412 297 0 43 chr11 55814848 55815156 -66028700 + G-rich Low_complexity Low_complexity 1 294 0 6 1010 203 229 37 19 chr11 55815321 55815428 -66028428 + GA-rich Low_complexity Low_complexity 5 113 0 6 1010 563 256 106 13 chr11 55815779 55816127 -66027729 - MTD LTR MaLR 0 419 1 6 1010 385 274 39 58 chr11 55816387 55816542 -66027314 - L1MC3 LINE L1 -1563 6222 6071 6 1010 665 323 66 22 chr11 55816852 55817169 -66026687 - MER68 LTR ERVL -232 331 1 6 1010 730 270 183 56 chr11 55817357 55817558 -66026298 - L1MC3 LINE L1 -1889 5896 5681 6 1010 351 0 0 0 chr11 55817558 55817597 -66026259 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1010 730 270 183 56 chr11 55817597 55817893 -66025963 - L1MC3 LINE L1 -2105 5680 5338 6 1010 22 0 0 0 chr11 55817909 55817931 -66025925 + AT_rich Low_complexity Low_complexity 1 22 0 6 1010 244 218 21 75 chr11 55817972 55818066 -66025790 - L1_Mur2 LINE L1 -995 4882 4794 6 1010 447 219 0 0 chr11 55818084 55818221 -66025635 + (TG)n Simple_repeat Simple_repeat 2 138 0 6 1010 1903 171 17 114 chr11 55818374 55818796 -66025060 - ORR1C2 LTR MaLR -3 381 1 6 1010 278 103 0 0 chr11 55818919 55818958 -66024898 - L1MC LINE L1 -1477 4669 4631 6 1010 593 269 83 47 chr11 55821092 55821346 -66022510 - Lx8 LINE L1 0 7473 7211 6 1010 335 309 86 39 chr11 55821505 55821737 -66022119 + L1M4 LINE L1 5401 5643 -535 6 1010 909 52 0 0 chr11 55822300 55822415 -66021441 + (TTC)n Simple_repeat Simple_repeat 3 117 0 6 1010 216 0 0 0 chr11 55822415 55822439 -66021417 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1010 715 265 92 55 chr11 55822494 55822766 -66021090 - B4A SINE B4 -8 284 3 6 1010 246 362 12 73 chr11 55822786 55822950 -66020906 + L2a LINE L2 3270 3423 -3 6 1010 442 95 0 98 chr11 55823462 55823544 -66020312 + B1_Mur4 SINE Alu 77 150 0 6 1010 780 159 0 0 chr11 55823545 55823683 -66020173 + GA-rich Low_complexity Low_complexity 1 138 0 6 1010 206 143 0 28 chr11 55824076 55824112 -66019744 + GA-rich Low_complexity Low_complexity 1 35 0 6 1010 763 213 12 12 chr11 55824370 55824536 -66019320 - B3 SINE B2 -13 203 38 6 1010 308 325 39 31 chr11 55825488 55825615 -66018241 - RSINE1 SINE B4 -24 141 14 6 1010 416 281 179 43 chr11 55827870 55828104 -66015752 + B4A SINE B4 5 270 -22 6 1010 405 0 0 0 chr11 55828160 55828205 -66015651 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1010 264 242 86 126 chr11 55828207 55828382 -66015474 - MLT1F2 LTR MaLR -50 510 343 6 1010 970 306 11 97 chr11 55828432 55828874 -66014982 + Lx7 LINE L1 6910 7313 -383 6 1010 372 43 0 0 chr11 55829060 55829106 -66014750 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 6 1010 300 382 27 33 chr11 55829109 55829293 -66014563 - MLT1F2 LTR MaLR -349 211 29 6 1010 391 88 14 29 chr11 55829578 55829648 -66014208 + (TTATA)n Simple_repeat Simple_repeat 3 71 0 6 1010 360 0 0 0 chr11 55829648 55829688 -66014168 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 1010 628 280 72 30 chr11 55830327 55830617 -66013239 - MT2A LTR ERVL -2 565 189 6 1010 342 265 88 83 chr11 55830868 55831049 -66012807 + MLT2B4 LTR ERVL 360 541 -15 6 1010 290 222 51 32 chr11 55831051 55831209 -66012647 + (TCTA)n Simple_repeat Simple_repeat 2 162 0 6 1010 529 144 30 8 chr11 55831236 55831369 -66012487 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 6 1010 3292 124 47 29 chr11 55831902 55832458 -66011398 - Lx LINE L1 -1 6653 6088 6 1010 279 273 89 22 chr11 55833691 55833826 -66010030 + MIRc SINE MIR 81 224 -44 6 1010 342 330 28 0 chr11 55833888 55833997 -66009859 + B4A SINE B4 169 280 -12 6 1010 432 55 0 0 chr11 55834012 55834067 -66009789 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1010 1202 232 98 83 chr11 55834484 55834629 -66009227 + RMER5 LTR ERV1 48 208 -326 6 1010 3050 137 19 45 chr11 55834629 55835163 -66008693 + RLTR28 LTR ERVL 1 520 -4 6 1010 1202 232 98 83 chr11 55835163 55835497 -66008359 + RMER5 LTR ERV1 209 534 0 6 1010 493 307 53 13 chr11 55835542 55835770 -66008086 - RMER15 LTR ERVL 0 575 339 6 1010 277 264 22 11 chr11 55836556 55836648 -66007208 - RMER5 LTR ERV1 0 534 442 6 1011 879 239 29 37 chr11 55836735 55836978 -66006878 - RMER5 LTR ERV1 0 534 294 6 1011 288 0 0 0 chr11 55837391 55837423 -66006433 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 6 1011 490 220 6 39 chr11 55837713 55838052 -66005804 + GA-rich Low_complexity Low_complexity 1 327 0 6 1011 235 298 154 37 chr11 55838780 55838916 -66004940 - RSINE1 SINE B4 0 165 14 6 1011 618 250 12 24 chr11 55839319 55839483 -66004373 - RSINE1 SINE B4 -1 164 3 6 1011 340 273 0 43 chr11 55839924 55840016 -66003840 - MER63B DNA AcHobo -32 404 317 6 1011 598 251 10 91 chr11 55841317 55841514 -66002342 - B3A SINE B2 -16 182 2 6 1011 312 259 51 43 chr11 55841931 55842048 -66001808 + RMER15 LTR ERVL 425 542 -33 6 1011 239 295 9 35 chr11 55843384 55843500 -66000356 - Lx8 LINE L1 -8 7465 7353 6 1011 252 0 0 0 chr11 55843651 55843679 -66000177 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1011 716 242 62 69 chr11 55843683 55843958 -65999898 - B4 SINE B4 -17 275 3 6 1011 290 54 0 0 chr11 55844563 55844616 -65999240 - L1Md_F3 LINE L1 -2 6580 6527 6 1011 286 287 28 90 chr11 55844694 55844746 -65999110 - ID4_ SINE ID -34 118 75 6 1011 333 0 0 0 chr11 55844746 55844783 -65999073 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 1011 286 267 13 51 chr11 55844783 55844852 -65999004 - ID4_ SINE ID -9 74 8 6 1011 335 250 0 14 chr11 55844946 55845019 -65998837 - tRNA-Ala-GCA tRNA tRNA -2 73 2 6 1011 261 0 0 0 chr11 55845357 55845386 -65998470 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1011 645 283 41 41 chr11 55845462 55845753 -65998103 - B4A SINE B4 0 292 2 6 1011 531 117 0 0 chr11 55846284 55846387 -65997469 + (A)n Simple_repeat Simple_repeat 1 103 0 6 1011 459 78 0 0 chr11 55846767 55846831 -65997025 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1011 1680 157 133 26 chr11 55847017 55847364 -65996492 - ORR1C2 LTR MaLR 0 384 1 6 1011 399 100 0 0 chr11 55847806 55847876 -65995980 + (T)n Simple_repeat Simple_repeat 1 70 0 6 1011 1735 203 16 24 chr11 55848059 55848432 -65995424 - MTEa LTR MaLR -1 378 9 6 1011 776 263 17 109 chr11 55849591 55849702 -65994154 + MTD LTR MaLR 18 103 -316 6 1011 836 186 135 6 chr11 55849702 55849880 -65993976 - B3 SINE B2 -14 202 2 6 1011 776 263 17 109 chr11 55849880 55850062 -65993794 + MTD LTR MaLR 104 284 -135 6 1011 708 266 6 54 chr11 55850096 55850296 -65993560 - B3 SINE B2 -1 197 2 6 1011 233 29 29 0 chr11 55850337 55850371 -65993485 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1011 281 287 0 0 chr11 55850443 55850486 -65993370 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 6 1011 198 103 0 0 chr11 55850486 55850515 -65993341 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 6 1011 281 287 0 0 chr11 55850515 55850565 -65993291 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 6 1011 228 67 0 0 chr11 55850568 55850598 -65993258 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 6 1011 850 107 14 7 chr11 55850642 55850783 -65993073 + (TTCC)n Simple_repeat Simple_repeat 2 143 0 6 1011 234 174 0 0 chr11 55850829 55850875 -65992981 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 6 1011 199 310 42 0 chr11 55851278 55851349 -65992507 - MIR3 SINE MIR -31 177 104 6 1011 289 345 17 17 chr11 55852400 55852518 -65991338 - MIR3 SINE MIR -7 201 84 6 1011 543 43 0 0 chr11 55852918 55852988 -65990868 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 6 1011 333 0 0 0 chr11 55852997 55853034 -65990822 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1011 620 136 25 13 chr11 55855169 55855326 -65988530 + (TCTCTG)n Simple_repeat Simple_repeat 4 162 0 6 1011 584 250 66 0 chr11 55855499 55855635 -65988221 + RSINE1 SINE B4 2 146 -19 6 1011 402 21 0 0 chr11 55855642 55855689 -65988167 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1011 1083 245 51 32 chr11 55855765 55856077 -65987779 - MTEa LTR MaLR -61 318 1 6 1011 183 42 0 0 chr11 55856104 55856128 -65987728 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 6 1011 240 222 30 45 chr11 55856359 55856425 -65987431 + RMER15 LTR ERVL 1 65 -510 6 1011 794 234 138 16 chr11 55856436 55856822 -65987034 + RMER15 LTR ERVL 22 571 -4 6 1011 402 213 0 0 chr11 55857104 55857179 -65986677 + B3A SINE B2 5 79 -119 6 1011 268 234 23 58 chr11 55857179 55857190 -65986666 + B4A SINE B4 5 87 -205 6 1011 306 224 129 0 chr11 55857379 55857464 -65986392 + B4 SINE B4 2 97 -195 6 1011 795 279 5 42 chr11 55857765 55857978 -65985878 + B4 SINE B4 88 292 0 6 1011 2363 280 59 21 chr11 55858597 55859356 -65984500 + Lx8 LINE L1 6684 7471 -2 6 1011 220 222 44 73 chr11 55859382 55859450 -65984406 + MIRb SINE MIR 123 188 -80 6 1011 438 53 0 0 chr11 55859838 55859895 -65983961 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1011 642 269 30 6 chr11 55860263 55860431 -65983425 + MTE2b LTR MaLR 8 179 -200 7 1011 477 0 0 0 chr11 55860533 55860586 -65983270 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1011 2350 169 7 26 chr11 55860619 55861049 -65982807 - Lx4B LINE L1 0 7058 6637 7 1011 579 29 0 0 chr11 55861074 55861143 -65982713 + (TTA)n Simple_repeat Simple_repeat 2 70 0 7 1011 669 206 39 0 chr11 55861276 55861427 -65982429 + MTE2b LTR MaLR 221 379 0 7 1011 1089 253 52 69 chr11 55862125 55862556 -65981300 + MT2B LTR ERVL 1 553 -48 7 1011 518 103 0 11 chr11 55862556 55862644 -65981212 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 1011 1089 252 41 58 chr11 55862644 55862669 -65981187 + MT2B LTR ERVL 554 584 -17 7 1011 1562 120 0 22 chr11 55862669 55862899 -65980957 + URR1B DNA MER1_type 1 225 0 7 1011 1089 252 41 58 chr11 55862899 55862923 -65980933 + MT2B LTR ERVL 585 600 -1 7 1011 235 382 0 18 chr11 55862934 55863046 -65980810 - MLT1I LTR MaLR -50 361 252 7 1011 192 338 47 36 chr11 55863584 55863718 -65980138 + MIR SINE MIR 131 262 -6 7 1011 1911 169 42 57 chr11 55863922 55864306 -65979550 - ORR1C1 LTR MaLR 0 378 1 7 1011 495 0 0 0 chr11 55864339 55864394 -65979462 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 7 1011 315 0 0 0 chr11 55864411 55864446 -65979410 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1011 778 230 18 6 chr11 55864449 55864615 -65979241 - B3A SINE B2 -30 168 1 7 1011 349 289 184 25 chr11 55865367 55865530 -65978326 + Lx8 LINE L1 7041 7229 -244 7 1011 313 261 118 50 chr11 55865575 55865736 -65978120 + RMER15 LTR ERVL 392 563 -12 7 1011 4775 92 113 15 chr11 55865830 55866645 -65977211 - RMER17A2 LTR ERVK -11 895 1 7 1011 199 330 148 0 chr11 55866869 55866957 -65976899 + L2a LINE L2 3306 3406 -20 7 1011 2603 83 3 27 chr11 55866994 55867365 -65976491 + L1Md_F2 LINE L1 6221 6582 0 7 1011 215 214 14 0 chr11 55867508 55867578 -65976278 + CT-rich Low_complexity Low_complexity 3 73 0 7 1011 263 49 24 0 chr11 55867582 55867623 -65976233 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1011 311 344 24 53 chr11 55867697 55867866 -65975990 + MIR3 SINE MIR 28 191 -17 7 1011 216 0 0 0 chr11 55868404 55868428 -65975428 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 7 1011 847 235 57 38 chr11 55868512 55868724 -65975132 - B3 SINE B2 0 216 1 7 1011 836 265 29 41 chr11 55868724 55868958 -65974898 - B4A SINE B4 -61 231 1 7 1011 383 176 0 14 chr11 55869061 55869130 -65974726 + ID4_ SINE ID 5 72 -11 7 1011 213 39 0 0 chr11 55869132 55869158 -65974698 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 7 1011 306 239 34 11 chr11 55870167 55870256 -65973600 - MTE2b LTR MaLR 0 379 289 7 1011 316 209 75 0 chr11 55870249 55870316 -65973540 + ID_B1 SINE B4 148 219 -5 7 1011 270 0 0 0 chr11 55870892 55870922 -65972934 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1011 571 223 16 0 chr11 55870924 55871045 -65972811 - RSINE1 SINE B4 -41 124 2 7 1011 243 343 88 73 chr11 55871583 55871844 -65972012 + MIRc SINE MIR 3 267 -1 7 1011 597 64 0 0 chr11 55872208 55872286 -65971570 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 1011 1299 280 23 35 chr11 55872287 55872717 -65971139 - Lx9 LINE L1 -188 7456 7032 7 1011 205 335 123 17 chr11 55873061 55873210 -65970646 + MIRc SINE MIR 25 170 -106 7 1011 749 244 65 10 chr11 55873761 55873960 -65969896 + ID_B1 SINE B4 2 211 -13 7 1011 592 294 166 32 chr11 55873989 55874513 -65969343 + L1ME1 LINE L1 5334 5927 -252 7 1011 506 238 0 6 chr11 55874520 55874681 -65969175 + (TA)n Simple_repeat Simple_repeat 2 161 0 7 1011 321 68 0 0 chr11 55874685 55874729 -65969127 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 7 1011 209 83 28 0 chr11 55874731 55874767 -65969089 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1011 231 275 85 77 chr11 55874864 55874994 -65968862 + L1MA10 LINE L1 6193 6323 -11 7 1011 656 265 39 15 chr11 55875301 55875504 -65968352 - B3 SINE B2 -8 208 1 7 1011 225 204 0 39 chr11 55876441 55876492 -65967364 + CT-rich Low_complexity Low_complexity 2 50 0 7 1011 21 0 0 0 chr11 55876726 55876747 -65967109 + AT_rich Low_complexity Low_complexity 1 21 0 7 1011 387 0 0 0 chr11 55876817 55876860 -65966996 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1011 822 48 0 0 chr11 55876860 55876962 -65966894 + (GA)n Simple_repeat Simple_repeat 2 104 0 7 1011 244 157 19 38 chr11 55877953 55878006 -65965850 + B4A SINE B4 2 53 -239 7 1011 465 283 73 37 chr11 55878115 55878306 -65965550 + ID_B1 SINE B4 4 201 -23 7 1011 357 316 164 46 chr11 55879074 55879293 -65964563 + B4A SINE B4 25 269 -23 7 1011 1362 215 100 29 chr11 55879296 55879646 -65964210 + MT2A LTR ERVL 18 392 -141 7 1011 307 286 110 8 chr11 55880230 55880357 -65963499 + B1F1 SINE Alu 2 141 -8 7 1011 3772 47 90 20 chr11 55880505 55881007 -65962849 - L1Md_F2 LINE L1 -14 6568 6032 7 1011 2775 56 18 0 chr11 55881007 55881347 -65962509 + L1_Mm LINE L1 5401 5746 -137 7 1011 222 386 63 0 chr11 55881355 55881513 -65962343 - MIR SINE MIR -23 239 72 7 1011 375 41 0 0 chr11 55882149 55882198 -65961658 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 7 1011 954 252 132 48 chr11 55882316 55882695 -65961161 - MTD LTR MaLR 0 419 9 7 1011 210 91 0 0 chr11 55882737 55882770 -65961086 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 7 1011 230 357 10 39 chr11 55883022 55883124 -65960732 - PB1 SINE Alu -27 100 2 7 1011 375 89 0 0 chr11 55883700 55883756 -65960100 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1011 516 293 138 39 chr11 55883999 55884355 -65959501 - MTE2a LTR MaLR -15 404 26 7 1011 645 255 53 16 chr11 55885199 55885386 -65958470 - B3A SINE B2 0 198 5 7 1011 189 0 0 0 chr11 55885497 55885518 -65958338 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1011 966 91 18 0 chr11 55886490 55886655 -65957201 + (CA)n Simple_repeat Simple_repeat 2 169 0 7 1011 451 224 33 7 chr11 55886721 55887154 -65956702 + (CA)n Simple_repeat Simple_repeat 1 444 0 7 1011 883 262 19 5 chr11 55888472 55888683 -65955173 + ID_B1 SINE B4 1 214 -10 7 1011 505 247 138 6 chr11 55888967 55889126 -65954730 - Lx8 LINE L1 -200 7273 7094 7 1011 279 0 0 0 chr11 55889954 55889985 -65953871 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1011 1010 76 181 12 chr11 55891135 55891295 -65952561 + B2_Mm2 SINE B2 1 187 -8 7 1011 336 268 172 6 chr11 55891312 55891481 -65952375 - L1MC4a LINE L1 -200 7795 7599 7 1011 600 343 48 19 chr11 55891690 55892064 -65951792 - L1MC4a LINE L1 -806 7076 6692 7 1011 1981 134 99 11 chr11 55892093 55892447 -65951409 - ORR1B1 LTR MaLR -4 390 6 7 1011 1438 70 11 5 chr11 55892551 55892737 -65951119 + B2_Mm2 SINE B2 1 187 -8 7 1011 396 321 58 46 chr11 55892835 55893181 -65950675 - L1MC4a LINE L1 -1344 6441 6092 7 1011 186 133 0 0 chr11 55893820 55893850 -65950006 + (TAG)n Simple_repeat Simple_repeat 3 32 0 7 1011 305 250 0 8 chr11 55893908 55894033 -65949823 + (TG)n Simple_repeat Simple_repeat 1 124 0 7 1011 250 224 0 121 chr11 55894033 55894099 -65949757 - RSINE1 SINE B4 0 165 108 7 1011 372 323 55 99 chr11 55894111 55894293 -65949563 - B4A SINE B4 -117 175 2 7 1011 235 354 68 20 chr11 55894584 55894731 -65949125 + MIRb SINE MIR 70 223 -45 7 1011 186 288 30 0 chr11 55895482 55895548 -65948308 + MER5A1 DNA MER1_type 36 103 -63 7 1011 255 279 99 0 chr11 55895614 55895725 -65948131 + MER5A1 DNA MER1_type 12 133 -33 7 1011 1110 87 0 0 chr11 55897147 55897320 -65946536 + (GA)n Simple_repeat Simple_repeat 2 174 0 7 1011 3130 73 2 0 chr11 55899650 55900049 -65943807 - MTB LTR MaLR 0 400 1 7 1011 746 296 17 51 chr11 55900682 55900977 -65942879 + B4A SINE B4 2 286 -6 7 1011 195 42 0 0 chr11 55901003 55901027 -65942829 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1011 232 318 35 0 chr11 55901488 55901573 -65942283 + MLT1E2 LTR MaLR 106 193 -434 7 1011 299 315 92 23 chr11 55901896 55902026 -65941830 + B4A SINE B4 147 285 -7 7 1011 754 179 125 0 chr11 55902328 55902512 -65941344 + MTD LTR MaLR 213 419 0 7 1011 255 31 0 0 chr11 55902729 55902761 -65941095 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1011 412 259 52 22 chr11 55904044 55904178 -65939678 + RMER15 LTR ERVL 292 429 -146 7 1011 746 252 62 138 chr11 55904178 55904578 -65939278 - ORR1D2 LTR MaLR 0 370 1 7 1011 251 203 0 13 chr11 55904867 55904928 -65938928 + CT-rich Low_complexity Low_complexity 15 75 0 7 1011 360 0 0 0 chr11 55904928 55904968 -65938888 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1011 251 203 0 13 chr11 55904968 55904981 -65938875 + polypyrimidine Low_complexity Low_complexity 2 14 0 7 1011 3452 123 14 16 chr11 55905094 55905664 -65938192 - RLTR1D LTR ERV1 0 605 37 7 1011 3297 56 0 5 chr11 55905974 55906372 -65937484 - MTA_Mm LTR MaLR 0 396 1 7 1011 445 267 164 33 chr11 55906821 55906945 -65936911 - Lx8 LINE L1 -3 7470 7333 7 1011 1547 74 23 0 chr11 55906945 55907160 -65936696 - L1Md_F2 LINE L1 0 6582 6363 7 1011 445 267 164 33 chr11 55907160 55907248 -65936608 - Lx8 LINE L1 -141 7332 7232 7 1011 652 269 0 7 chr11 55907289 55907435 -65936421 + ID_B1 SINE B4 79 223 -1 7 1011 22 35 0 0 chr11 55907744 55907773 -65936083 + AT_rich Low_complexity Low_complexity 1 29 0 7 1011 549 233 0 8 chr11 55907823 55907940 -65935916 - RSINE1 SINE B4 -38 127 12 7 1011 638 32 75 0 chr11 55908011 55908127 -65935729 + L1_Mus1 LINE L1 6459 6567 0 7 1011 343 352 98 30 chr11 55908259 55908798 -65935058 - L1MEg LINE L1 -3449 2697 2122 7 1011 327 229 9 35 chr11 55909420 55909533 -65934323 - L1MEg LINE L1 -4884 1358 1249 7 1011 345 93 0 0 chr11 55910272 55910326 -65933530 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1011 282 309 0 0 chr11 55910356 55910437 -65933419 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1011 876 126 13 19 chr11 55910961 55911115 -65932741 + RMER17A-int LTR ERVK 839 991 -737 7 1011 3233 150 67 33 chr11 55911331 55911943 -65931913 + RMER17A-int LTR ERVK 1096 1728 0 7 1011 5751 154 11 10 chr11 55911944 55912901 -65930955 + RMER17B LTR ERVK 1 958 0 7 1011 1837 206 63 5 chr11 55913846 55914242 -65929614 + MTD LTR MaLR 1 419 0 8 1011 300 207 8 16 chr11 55914406 55914529 -65929327 + (TG)n Simple_repeat Simple_repeat 1 122 0 8 1011 309 299 59 72 chr11 55914657 55914812 -65929044 - B4A SINE B4 -81 143 2 8 1011 216 0 0 0 chr11 55915113 55915137 -65928719 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1011 504 207 11 33 chr11 55916076 55916256 -65927600 + GA-rich Low_complexity Low_complexity 3 178 0 8 1011 4931 68 6 2 chr11 55916983 55917620 -65926236 + L1_Mus3 LINE L1 5991 6630 -8 8 1011 215 186 23 0 chr11 55917620 55917663 -65926193 + (TA)n Simple_repeat Simple_repeat 1 44 0 8 1011 839 289 78 54 chr11 55917738 55918108 -65925748 + MTE2b LTR MaLR 1 379 0 8 1011 378 0 0 0 chr11 55918248 55918290 -65925566 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1011 425 317 138 12 chr11 55919638 55919884 -65923972 + B4A SINE B4 2 278 -14 8 1011 209 320 27 0 chr11 55919896 55919971 -65923885 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1011 341 299 41 7 chr11 55920734 55920871 -65922985 + MTE2a LTR MaLR 238 421 0 8 1011 1139 68 0 0 chr11 55921823 55921970 -65921886 - B1_Mm SINE Alu 0 147 1 8 1011 1443 248 73 44 chr11 55922354 55922835 -65921021 - RMER20A LTR ERVK 0 516 22 8 1011 552 282 15 151 chr11 55922987 55923325 -65920531 + B4 SINE B4 1 292 0 8 1011 305 284 0 12 chr11 55923331 55923413 -65920443 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1011 285 230 17 33 chr11 55923486 55923666 -65920190 + (CATA)n Simple_repeat Simple_repeat 4 180 0 8 1011 299 213 14 42 chr11 55923643 55923785 -65920071 + (CATATA)n Simple_repeat Simple_repeat 6 143 0 8 1011 2822 133 2 5 chr11 55923909 55924331 -65919525 - MTC LTR MaLR 0 421 1 8 1011 495 0 0 0 chr11 55925834 55925889 -65917967 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1011 464 250 143 88 chr11 55925956 55926228 -65917628 + B4A SINE B4 2 288 -4 8 1011 300 120 0 0 chr11 55926307 55926357 -65917499 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1011 384 111 0 0 chr11 55926357 55926429 -65917427 + (GA)n Simple_repeat Simple_repeat 1 72 0 8 1011 1039 279 27 48 chr11 55927099 55927516 -65916340 - MTE2a LTR MaLR -2 417 1 8 1011 501 319 42 14 chr11 55928269 55928485 -65915371 - RMER5 LTR ERV1 -55 479 258 8 1011 230 200 91 0 chr11 55928799 55928854 -65915002 + B1F SINE Alu 1 60 -89 8 1011 294 213 33 0 chr11 55928806 55928867 -65914989 + ID_B1 SINE B4 93 155 -69 8 1011 350 229 0 0 chr11 55929024 55929094 -65914762 + B4 SINE B4 2 71 -221 8 1011 592 211 140 67 chr11 55929860 55930038 -65913818 - B3A SINE B2 -5 193 3 8 1011 330 261 75 55 chr11 55930650 55930796 -65913060 + B4A SINE B4 1 149 -143 8 1011 237 237 0 0 chr11 55930902 55930961 -65912895 + (CACG)n Simple_repeat Simple_repeat 2 60 0 8 1011 1883 185 98 3 chr11 55930961 55931319 -65912537 - Lx6 LINE L1 -342 7118 6727 8 1011 5084 138 16 50 chr11 55931360 55931918 -65911938 + Lx6 LINE L1 5334 5874 -1586 8 1011 261 0 0 0 chr11 55931918 55931947 -65911909 + (TA)n Simple_repeat Simple_repeat 2 30 0 8 1011 5084 205 68 17 chr11 55931947 55932750 -65911106 + Lx6 LINE L1 5875 6727 -733 8 1011 387 0 0 0 chr11 55932787 55932830 -65911026 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1011 426 202 30 50 chr11 55932904 55933003 -65910853 - Lx6 LINE L1 -787 6673 6577 8 1011 333 276 53 0 chr11 55933570 55933646 -65910210 - ID4 SINE ID -3 80 1 8 1011 1161 55 7 7 chr11 55933689 55933835 -65910021 + B1_Mm SINE Alu 2 147 0 8 1011 201 108 0 0 chr11 55933835 55933872 -65909984 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 8 1011 408 303 0 0 chr11 55933956 55934065 -65909791 - RSINE1 SINE B4 -56 109 1 8 1011 482 264 63 45 chr11 55934074 55934296 -65909560 - L1MC4 LINE L1 -364 7678 7453 8 1011 671 292 23 1 chr11 55934437 55934632 -65909224 - B3A SINE B2 -18 198 1 8 1011 969 152 0 0 chr11 55934662 55934866 -65908990 + (TCTA)n Simple_repeat Simple_repeat 1 204 0 8 1011 450 0 0 0 chr11 55935405 55935455 -65908401 + (CAA)n Simple_repeat Simple_repeat 2 51 0 8 1011 2079 142 6 3 chr11 55935806 55936131 -65907725 + ORR1A3 LTR MaLR 1 326 0 8 1011 577 316 89 12 chr11 55936131 55936378 -65907478 + B4A SINE B4 21 286 -6 8 1011 1082 279 66 33 chr11 55936497 55936657 -65907199 + MTEa LTR MaLR 1 160 -219 8 1011 414 0 0 0 chr11 55936657 55936703 -65907153 + (TAA)n Simple_repeat Simple_repeat 2 47 0 8 1011 1082 279 66 33 chr11 55936703 55936905 -65906951 + MTEa LTR MaLR 161 374 -5 8 1011 1224 49 86 0 chr11 55936950 55937112 -65906744 + B2_Mm1t SINE B2 2 177 -16 8 1011 1251 41 0 0 chr11 55937112 55937259 -65906597 + B1_Mm SINE Alu 1 147 0 8 1011 377 311 32 8 chr11 55937507 55937630 -65906226 + MER74A LTR ERVL 196 321 -237 8 1011 719 22 11 0 chr11 55937633 55937722 -65906134 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 8 1011 361 292 104 40 chr11 55937724 55937760 -65906096 + Lx8 LINE L1 7169 7204 -269 8 1011 257 0 30 0 chr11 55937760 55937793 -65906063 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8 1011 361 292 104 40 chr11 55937793 55937881 -65905975 + Lx8 LINE L1 7205 7301 -172 8 1011 283 221 15 23 chr11 55937947 55938077 -65905779 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 8 1011 953 236 0 44 chr11 55938160 55938386 -65905470 + B3 SINE B2 1 216 0 8 1011 394 191 0 0 chr11 55939221 55939289 -65904567 - Lx4B LINE L1 -800 6258 6191 8 1011 374 275 22 0 chr11 55939990 55940081 -65903775 - B3A SINE B2 -105 93 1 8 1011 228 35 0 0 chr11 55940974 55941003 -65902853 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1011 256 264 13 77 chr11 55941004 55941082 -65902774 - RSINE1 SINE B4 -15 150 78 8 1011 259 333 42 0 chr11 55941147 55941219 -65902637 - B4A SINE B4 -190 102 28 8 1011 561 294 57 0 chr11 55941512 55941689 -65902167 - B3 SINE B2 0 216 30 8 1011 328 271 0 0 chr11 55941686 55941771 -65902085 - B3A SINE B2 -110 88 4 8 1011 2084 259 139 34 chr11 55943060 55943548 -65900308 - Lx8 LINE L1 -295 7178 6626 8 1011 1645 170 14 170 chr11 55943548 55943994 -65899862 - ORR1C1 LTR MaLR -2 376 1 8 1011 2084 259 139 34 chr11 55943994 55944301 -65899555 - Lx8 LINE L1 -848 6625 6299 8 1011 361 346 19 0 chr11 55944410 55944514 -65899342 + Lx8 LINE L1 6198 6303 -1170 8 1011 213 39 0 0 chr11 55945001 55945027 -65898829 + (TGG)n Simple_repeat Simple_repeat 2 27 0 8 1011 642 281 86 17 chr11 55945905 55946137 -65897719 + B4A SINE B4 1 248 -44 8 1011 690 13 0 0 chr11 55946236 55946315 -65897541 + (GA)n Simple_repeat Simple_repeat 2 80 0 8 1011 222 406 8 8 chr11 55946389 55946523 -65897333 - MIRb SINE MIR -41 227 94 8 1011 543 56 0 0 chr11 55946609 55946680 -65897176 + (TC)n Simple_repeat Simple_repeat 1 71 0 8 1011 910 280 36 16 chr11 55948740 55949045 -65894811 - Lx8 LINE L1 -6 7467 7157 8 1011 1250 49 6 0 chr11 55949468 55949630 -65894226 + (TG)n Simple_repeat Simple_repeat 2 164 0 8 1011 207 0 0 0 chr11 55949689 55949712 -65894144 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1011 784 225 73 0 chr11 55950324 55950502 -65893354 - B3 SINE B2 0 216 26 8 1011 573 15 0 0 chr11 55950503 55950569 -65893287 + (TC)n Simple_repeat Simple_repeat 2 67 0 8 1011 14122 80 30 9 chr11 55950924 55953542 -65890314 - L1VL2 LINE L1 -631 2984 308 8 1011 683 120 216 0 chr11 55953905 55954030 -65889826 + L1_Mus4 LINE L1 6464 6615 -21 8 1011 1308 266 53 98 chr11 55954033 55954765 -65889091 - RMER19C LTR ERVK -11 726 1 8 1011 437 149 14 0 chr11 55954780 55954854 -65889002 - RMER19C LTR ERVK -536 75 1 8 1011 898 274 15 0 chr11 55954856 55955057 -65888799 - Lx9 LINE L1 -981 6663 6460 8 1011 269 312 0 10 chr11 55955874 55955971 -65887885 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 1011 254 259 14 14 chr11 55956886 55957031 -65886825 + CT-rich Low_complexity Low_complexity 2 146 0 8 1011 23 33 0 0 chr11 55957176 55957206 -65886650 + AT_rich Low_complexity Low_complexity 1 30 0 8 1011 24 0 0 0 chr11 55957357 55957381 -65886475 + AT_rich Low_complexity Low_complexity 1 24 0 8 1011 279 0 0 0 chr11 55957435 55957466 -65886390 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 8 1011 635 308 28 28 chr11 55957715 55957969 -65885887 - B4A SINE B4 -38 254 1 8 1011 5827 129 24 35 chr11 55958011 55958980 -65884876 + RMER17B LTR ERVK 1 958 0 8 1011 4641 38 9 4 chr11 55959160 55959716 -65884140 + L1Md_F3 LINE L1 6025 6583 -1 8 1011 225 0 0 0 chr11 55959799 55959824 -65884032 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1011 561 339 23 0 chr11 55959830 55960007 -65883849 - B3A SINE B2 -17 181 1 8 1011 216 0 0 0 chr11 55960917 55960941 -65882915 + (TC)n Simple_repeat Simple_repeat 2 25 0 8 1011 252 0 0 0 chr11 55960941 55960968 -65882888 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1011 508 245 80 43 chr11 55960968 55961120 -65882736 - B3 SINE B2 -52 164 5 8 1011 327 241 121 0 chr11 55961447 55961530 -65882326 - RSINE1 SINE B4 -64 101 9 8 1011 189 229 0 0 chr11 55962039 55962087 -65881769 + CT-rich Low_complexity Low_complexity 4 51 0 8 1011 346 270 12 86 chr11 55962112 55962274 -65881582 - MTEa LTR MaLR -229 150 1 8 1011 299 266 48 41 chr11 55962275 55962420 -65881436 - L2a LINE L2 -257 3169 3024 8 1011 493 297 0 8 chr11 55962609 55962738 -65881118 + Lx8 LINE L1 7230 7357 -116 8 1011 872 228 34 10 chr11 55963119 55963323 -65880533 - ID_B1 SINE B4 -14 210 2 8 1011 254 325 127 0 chr11 55963325 55963491 -65880365 - MLT1H2 LTR MaLR -37 452 266 8 1011 529 303 84 28 chr11 55963950 55964201 -65879655 + Lx8 LINE L1 7208 7472 -1 8 1011 220 260 0 0 chr11 55964354 55964404 -65879452 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1011 357 238 110 59 chr11 55964956 55965228 -65878628 + L1M3 LINE L1 5254 5539 -650 9 1011 548 235 48 36 chr11 55965245 55965413 -65878443 - B3A SINE B2 0 198 29 9 1011 534 137 0 0 chr11 55965981 55966076 -65877780 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 1011 1401 134 0 5 chr11 55966360 55966578 -65877278 - Lx2 LINE L1 -6 6991 6775 9 1011 1866 100 4 3 chr11 55966578 55966872 -65876984 - Lx2 LINE L1 -354 6643 6390 9 1011 978 289 54 30 chr11 55966973 55967484 -65876372 - Lx7 LINE L1 -1978 5718 5156 9 1012 753 250 79 10 chr11 55967778 55967980 -65875876 + B3 SINE B2 1 216 0 9 1012 1038 235 20 32 chr11 55967990 55968337 -65875519 + RLTR15 LTR ERVK 1 343 -16 9 1012 22 35 0 0 chr11 55968349 55968378 -65875478 + AT_rich Low_complexity Low_complexity 1 29 0 9 1012 249 259 68 85 chr11 55968381 55968499 -65875357 + PB1D9 SINE Alu 5 120 0 9 1012 252 253 84 0 chr11 55968417 55968500 -65875356 + ID_B1 SINE B4 135 224 0 9 1012 246 296 0 14 chr11 55968976 55969048 -65874808 + ID_B1 SINE B4 87 157 -67 9 1012 239 310 23 11 chr11 55969048 55969059 -65874797 + PB1D10 SINE Alu 6 89 -28 9 1012 405 0 0 0 chr11 55969070 55969115 -65874741 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1012 638 269 89 55 chr11 55969289 55969560 -65874296 - Lx9 LINE L1 -352 7292 7013 9 1012 508 271 162 29 chr11 55969583 55969860 -65873996 + Lx9 LINE L1 7285 7598 -46 9 1012 3750 34 0 0 chr11 55970603 55971040 -65872816 + L1Md_F2 LINE L1 6134 6570 -12 9 1012 1896 159 17 17 chr11 55971066 55971425 -65872431 - ORR1B2 LTR MaLR -8 359 1 9 1012 256 317 73 58 chr11 55971764 55971955 -65871901 + L1M1 LINE L1 5673 5866 -437 9 1012 217 277 0 0 chr11 55972078 55972125 -65871731 + G-rich Low_complexity Low_complexity 1 47 0 9 1012 294 249 169 33 chr11 55972215 55972380 -65871476 + B3A SINE B2 2 209 -7 9 1012 180 0 0 0 chr11 55973921 55973941 -65869915 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1012 695 184 86 22 chr11 55974091 55974230 -65869626 - B1_Mus1 SINE Alu 0 148 1 9 1012 2332 77 42 25 chr11 55974270 55974625 -65869231 + MTB LTR MaLR 1 361 -39 9 1012 1306 91 11 0 chr11 55974625 55974812 -65869044 + RMER17B LTR ERVK 1 189 -769 9 1012 584 135 0 0 chr11 55974811 55974907 -65868949 - RMER17B LTR ERVK -684 274 179 9 1012 2731 119 91 10 chr11 55974903 55975387 -65868469 + MTB-int LTR MaLR 534 1059 -39 9 1012 2689 68 5 27 chr11 55975387 55975794 -65868062 + MTB LTR MaLR 3 400 0 9 1012 183 42 0 0 chr11 55976136 55976160 -65867696 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 9 1012 630 301 48 0 chr11 55976167 55976373 -65867483 - ID_B1 SINE B4 -6 218 3 9 1012 463 289 22 7 chr11 55976803 55976939 -65866917 + RSINE1 SINE B4 3 140 -25 9 1012 342 0 0 0 chr11 55976939 55976977 -65866879 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1012 747 259 25 30 chr11 55977010 55977209 -65866647 + B3A SINE B2 1 198 0 9 1012 709 232 11 44 chr11 55977922 55978134 -65865722 + B3A SINE B2 16 210 -6 9 1012 210 346 129 35 chr11 55978274 55978795 -65865061 - L2 LINE L2 -339 3080 2511 9 1012 468 345 57 19 chr11 55979760 55980023 -65863833 + B4A SINE B4 10 282 -10 9 1012 423 68 0 0 chr11 55980913 55980972 -65862884 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 9 1012 616 315 16 11 chr11 55982143 55982326 -65861530 + B3 SINE B2 1 184 -32 9 1012 393 22 0 0 chr11 55982363 55982409 -65861447 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1012 649 276 0 26 chr11 55982416 55982572 -65861284 - B3A SINE B2 -46 152 1 9 1012 597 52 0 0 chr11 55984087 55984164 -65859692 + (TC)n Simple_repeat Simple_repeat 2 78 0 9 1012 353 219 112 20 chr11 55984263 55984361 -65859495 + B3A SINE B2 88 194 -4 9 1012 803 264 29 16 chr11 55984428 55984674 -65859182 - L1MA4 LINE L1 -359 5941 5693 9 1012 567 267 33 99 chr11 55984922 55985112 -65858744 + B3A SINE B2 1 178 -20 9 1012 369 0 0 0 chr11 55985112 55985153 -65858703 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1012 369 0 0 0 chr11 55985153 55985193 -65858663 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1012 567 267 33 99 chr11 55985193 55985213 -65858643 + B3A SINE B2 179 197 -1 9 1012 378 171 0 0 chr11 55985285 55985355 -65858501 + G-rich Low_complexity Low_complexity 5 74 0 9 1012 297 280 73 48 chr11 55986105 55986229 -65857627 - MER5A DNA MER1_type -56 133 7 9 1012 510 17 0 0 chr11 55986352 55986411 -65857445 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1012 238 246 98 0 chr11 55986451 55986512 -65857344 - B3A SINE B2 -100 98 32 9 1012 1047 78 0 0 chr11 55986653 55986795 -65857061 + (TCTCCC)n Simple_repeat Simple_repeat 3 144 0 9 1012 615 269 18 0 chr11 55987578 55987745 -65856111 - B3A SINE B2 -28 170 1 9 1012 341 294 125 0 chr11 55987763 55987923 -65855933 - L1MA8 LINE L1 -178 6113 5934 9 1012 232 273 81 6 chr11 55988172 55988271 -65855585 + B3 SINE B2 90 193 -23 9 1012 632 89 0 43 chr11 55988271 55988365 -65855491 - Lx5 LINE L1 -1266 5784 5695 9 1012 2025 281 36 59 chr11 55988360 55989701 -65854155 + Lx6 LINE L1 5799 7456 -4 9 1012 328 279 42 49 chr11 55989809 55989952 -65853904 - L1M5 LINE L1 -2578 3568 3427 9 1012 292 301 97 50 chr11 55990314 55990653 -65853203 - L1MD LINE L1 -3218 2928 2574 9 1012 42125 4 0 0 chr11 55990625 55997013 -65846843 - L1Md_A LINE L1 0 6582 194 9 1012 1229 242 214 75 chr11 55997243 55997711 -65846145 + MT2A LTR ERVL 1 533 0 9 1012 10695 157 32 7 chr11 55997713 55999013 -65844843 + MERVL_2A-int LTR ERVL 4 1327 -4434 9 1012 1794 126 53 37 chr11 55999013 55999335 -65844521 - ORR1A4 LTR MaLR -2 327 1 9 1012 10695 176 32 26 chr11 55999335 56000000 -65843856 + MERVL_2A-int LTR ERVL 1185 1833 -3652 9 1012 4328 168 13 2 chr11 56000000 56000792 -65843064 + MERVL_2A-int LTR ERVL 1936 2779 -2982 1 1012 1462 287 101 58 chr11 56000794 56001530 -65842326 + Tigger1 DNA MER2_type 1041 1807 -611 2 1012 306 275 0 42 chr11 56001535 56001630 -65842226 + PB1D10 SINE Alu 1 91 -26 3 1012 480 265 0 8 chr11 56001549 56001682 -65842174 + ID_B1 SINE B4 92 223 -1 4 1012 993 282 48 34 chr11 56001705 56002119 -65841737 + Tigger1 DNA MER2_type 1811 2230 -188 2 1012 1321 256 19 0 chr11 56002154 56002463 -65841393 + MTD LTR MaLR 1 315 -104 5 1012 269 238 101 56 chr11 56002465 56002476 -65841380 - B1F1 SINE Alu -54 95 3 6 1012 507 141 0 0 chr11 56002476 56002554 -65841302 - 4.5SRNA scRNA scRNA -15 79 2 7 1012 1080 138 79 44 chr11 56002555 56002666 -65841190 + Lx LINE L1 6411 6518 -136 8 1012 180 0 0 0 chr11 56002666 56002686 -65841170 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 9 1012 1080 138 79 44 chr11 56002686 56002801 -65841055 + Lx LINE L1 6519 6644 -10 8 1012 316 211 28 0 chr11 56002801 56002872 -65840984 + MTD LTR MaLR 333 405 -14 5 1012 257 261 158 23 chr11 56003531 56003664 -65840192 - L1MDa LINE L1 -4608 2025 1875 1 1012 295 243 43 0 chr11 56003664 56003734 -65840122 + CT-rich Low_complexity Low_complexity 2 74 0 1 1012 254 268 42 48 chr11 56003827 56003992 -65839864 - L1MDa LINE L1 -4893 1740 1577 1 1012 352 363 8 0 chr11 56004448 56004572 -65839284 + ID_B1 SINE B4 92 216 -8 1 1012 213 39 0 0 chr11 56005256 56005282 -65838574 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1012 239 262 0 47 chr11 56005319 56005383 -65838473 + RSINE1 SINE B4 3 63 -102 1 1012 316 291 67 25 chr11 56005388 56005508 -65838348 - RMER15 LTR ERVL -18 557 433 1 1012 247 250 0 15 chr11 56005769 56005834 -65838022 - B4A SINE B4 -226 66 3 1 1012 421 256 243 31 chr11 56006726 56006952 -65836904 - RMER15 LTR ERVL 0 575 302 1 1012 337 263 113 0 chr11 56007329 56007462 -65836394 - L1MC4a LINE L1 -7 7875 7728 1 1012 1100 58 0 0 chr11 56007785 56007922 -65835934 + B1_Mus1 SINE Alu 3 139 -9 1 1012 218 56 28 0 chr11 56007922 56007958 -65835898 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1012 537 323 5 10 chr11 56007958 56008155 -65835701 - B3A SINE B2 0 198 3 2 1012 423 322 44 17 chr11 56008158 56008338 -65835518 - B4A SINE B4 -62 230 46 2 1012 1525 42 26 0 chr11 56008481 56008672 -65835184 - L1Md_A LINE L1 -2 6580 6385 2 1012 195 296 79 57 chr11 56008831 56008971 -65834885 - MIRb SINE MIR -121 147 5 2 1012 578 194 0 8 chr11 56009197 56009227 -65834629 + polypyrimidine Low_complexity Low_complexity 100 129 0 2 1012 1494 33 0 0 chr11 56009227 56009407 -65834449 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1012 578 194 0 8 chr11 56009407 56009506 -65834350 + polypyrimidine Low_complexity Low_complexity 2 99 0 2 1012 947 188 79 30 chr11 56009532 56009735 -65834121 - B3 SINE B2 0 216 4 2 1012 575 307 30 64 chr11 56010012 56010214 -65833642 - B4 SINE B4 0 292 98 2 1012 324 102 0 0 chr11 56010246 56010295 -65833561 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 3 1012 1192 52 0 6 chr11 56012159 56012315 -65831541 + L1_Mus1 LINE L1 6413 6567 0 3 1012 214 316 38 12 chr11 56012694 56012774 -65831082 - ID4 SINE ID 0 83 2 3 1012 427 323 15 0 chr11 56012918 56013051 -65830805 + ID_B1 SINE B4 87 221 -3 3 1012 222 265 0 14 chr11 56013083 56013152 -65830704 + GA-rich Low_complexity Low_complexity 2 69 0 3 1012 579 340 18 26 chr11 56013742 56014014 -65829842 - B4A SINE B4 -18 274 5 3 1012 264 261 84 8 chr11 56014655 56014786 -65829070 - L1M4 LINE L1 -4854 1688 1548 3 1012 822 257 43 14 chr11 56015295 56015504 -65828352 + ID_B1 SINE B4 10 224 0 3 1012 4561 52 57 9 chr11 56015665 56016249 -65827607 - L1Md_F2 LINE L1 -1 6581 5970 3 1012 663 293 19 53 chr11 56016945 56017154 -65826702 + ID_B1 SINE B4 18 219 -5 3 1012 36183 34 1 0 chr11 56017317 56023804 -65820052 + L1Md_T LINE L1 1 5589 -297 4 1012 9147 6 0 0 chr11 56023804 56024835 -65819021 + L1Md_T LINE L1 5590 6585 0 4 1012 235 294 0 14 chr11 56025029 56025098 -65818758 - B1F SINE Alu -63 86 19 4 1012 245 221 154 55 chr11 56025349 56025440 -65818416 - RMER15 LTR ERVL -119 456 357 4 1012 518 297 88 0 chr11 56026147 56026295 -65817561 + B3A SINE B2 1 161 -37 4 1012 372 104 0 0 chr11 56026295 56026362 -65817494 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1012 23 0 0 0 chr11 56026377 56026400 -65817456 + AT_rich Low_complexity Low_complexity 1 23 0 4 1012 9119 102 32 1 chr11 56027175 56028518 -65815338 - L1_Mm LINE L1 -2708 3175 1791 4 1012 5455 52 1 23 chr11 56028518 56029220 -65814636 + L1_Mus1 LINE L1 5881 6567 0 4 1012 192 258 30 75 chr11 56029827 56029894 -65813962 + MIRb SINE MIR 25 88 -180 4 1012 360 0 0 0 chr11 56030349 56030389 -65813467 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1012 739 214 79 30 chr11 56030800 56031002 -65812854 - ID_B1 SINE B4 0 224 13 5 1012 1662 202 86 13 chr11 56031049 56031435 -65812421 - MTD LTR MaLR -5 414 1 5 1012 315 177 36 48 chr11 56031992 56032075 -65811781 + ID4_ SINE ID 2 83 0 5 1012 246 322 33 59 chr11 56032483 56032635 -65811221 - MLT1G1 LTR MaLR -262 317 170 5 1012 308 251 180 23 chr11 56032656 56032787 -65811069 + L1MA4 LINE L1 5795 5944 -359 5 1012 354 45 0 0 chr11 56032787 56032831 -65811025 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1012 556 220 30 8 chr11 56033080 56033213 -65810643 - MTD LTR MaLR -16 403 268 5 1012 519 331 37 34 chr11 56033268 56033537 -65810319 - MTD LTR MaLR -149 270 1 5 1012 622 255 12 53 chr11 56034196 56034331 -65809525 + B3A SINE B2 20 148 -50 5 1012 414 0 0 0 chr11 56034331 56034377 -65809479 + (CTA)n Simple_repeat Simple_repeat 2 47 0 5 1012 622 265 9 50 chr11 56034377 56034435 -65809421 + B3A SINE B2 147 203 -13 5 1012 263 290 29 48 chr11 56034629 56034734 -65809122 + PB1D10 SINE Alu 5 107 -10 5 1012 564 344 56 30 chr11 56034879 56035348 -65808508 - MLT1G1-int LTR MaLR -877 612 108 5 1012 412 334 98 51 chr11 56035439 56035812 -65808044 - MLT1G1 LTR MaLR -193 402 3 5 1012 1416 224 161 47 chr11 56035907 56036032 -65807824 - RMER15 LTR ERVL 0 575 441 6 1012 195 42 0 0 chr11 56036032 56036056 -65807800 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1012 1416 224 161 47 chr11 56036056 56036077 -65807779 - RMER15 LTR ERVL -135 440 419 6 1012 999 25 0 0 chr11 56036077 56036195 -65807661 + (GA)n Simple_repeat Simple_repeat 1 118 0 6 1012 1416 224 161 47 chr11 56036195 56036539 -65807317 - RMER15 LTR ERVL -157 418 29 6 1012 279 193 18 0 chr11 56036563 56036620 -65807236 - RMER15 LTR ERVL -515 60 3 6 1012 302 313 90 84 chr11 56037223 56037401 -65806455 + B4A SINE B4 1 179 -113 6 1012 1909 147 59 0 chr11 56037988 56038295 -65805561 - ORR1A4 LTR MaLR 0 329 5 6 1012 396 103 0 0 chr11 56038325 56038383 -65805473 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 6 1012 1422 267 79 5 chr11 56038408 56038837 -65805019 - MT2A LTR ERVL -71 462 2 6 1012 1316 294 16 11 chr11 56039074 56039449 -65804407 + MTE2b LTR MaLR 1 377 -2 6 1012 325 289 179 5 chr11 56039597 56039792 -65804064 - L1MB5 LINE L1 -251 5923 5695 6 1012 273 151 0 0 chr11 56039884 56039937 -65803919 + T-rich Low_complexity Low_complexity 1 53 0 6 1012 42018 5 0 0 chr11 56039939 56046521 -65797335 - L1Md_A LINE L1 0 6582 1 7 1012 328 339 20 71 chr11 56047408 56047605 -65796251 + B4 SINE B4 1 187 -105 7 1012 217 0 0 159 chr11 56047665 56047847 -65796009 + (CCTCG)n Simple_repeat Simple_repeat 2 154 0 7 1012 450 0 0 0 chr11 56047910 56047960 -65795896 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1012 433 105 31 21 chr11 56048327 56048424 -65795432 + L1Md_F2 LINE L1 6484 6581 -1 7 1012 1455 300 93 17 chr11 56048468 56049007 -65794849 + Lx8 LINE L1 6779 7358 -115 7 1012 628 185 0 20 chr11 56049455 56049503 -65794353 + polypyrimidine Low_complexity Low_complexity 100 146 0 7 1012 1141 101 0 11 chr11 56049503 56049684 -65794172 + (TCC)n Simple_repeat Simple_repeat 2 180 0 7 1012 628 185 0 20 chr11 56049684 56049784 -65794072 + polypyrimidine Low_complexity Low_complexity 1 99 0 7 1012 635 216 30 15 chr11 56049987 56050184 -65793672 - RCHARR1 DNA MER1_type -102 872 673 7 1012 950 17 9 0 chr11 56050187 56050303 -65793553 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 8 1012 326 317 117 0 chr11 56050311 56050431 -65793425 - ID_B1 SINE B4 -9 215 82 8 1012 809 294 53 71 chr11 56051496 56051862 -65791994 - ORR1E LTR MaLR 0 379 1 8 1012 459 0 0 0 chr11 56052208 56052259 -65791597 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1012 354 107 0 0 chr11 56052638 56052694 -65791162 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1012 8679 27 0 0 chr11 56054181 56055638 -65788218 - L1Md_A LINE L1 -1 6581 5125 8 1012 1036 251 86 34 chr11 56055690 56056041 -65787815 - ORR1D2 LTR MaLR 0 370 2 8 1012 565 323 41 51 chr11 56056578 56056774 -65787082 + ID_B1 SINE B4 2 195 -29 8 1012 273 347 31 24 chr11 56057472 56057599 -65786257 + MER94 DNA AcHobo 2 129 -5 8 1012 701 299 4 110 chr11 56057683 56057946 -65785910 + B4 SINE B4 8 242 -50 8 1012 725 276 83 29 chr11 56059139 56059344 -65784512 - ID_B1 SINE B4 -8 216 1 9 1012 795 21 0 0 chr11 56059743 56059836 -65784020 + (CA)n Simple_repeat Simple_repeat 2 94 0 9 1012 593 278 57 16 chr11 56061434 56061628 -65782228 + RMER15 LTR ERVL 304 505 -70 9 1012 551 254 62 72 chr11 56062159 56062354 -65781502 - B3A SINE B2 -5 193 1 9 1012 884 303 38 0 chr11 56062381 56062645 -65781211 - B4A SINE B4 -2 290 17 9 1012 1666 206 35 19 chr11 56062658 56063024 -65780832 - ORR1D1 LTR MaLR 0 374 3 9 1012 3689 180 34 32 chr11 56063681 56064524 -65779332 - RLTR13A LTR ERVK 0 855 11 9 1012 268 273 89 18 chr11 56064805 56064917 -65778939 - MLT1A1 LTR MaLR -18 390 271 9 1012 1836 128 40 111 chr11 56064978 56065330 -65778526 + ORR1A2 LTR MaLR 1 327 0 9 1012 425 252 0 70 chr11 56065525 56065653 -65778203 + B1F SINE Alu 1 119 -1 9 1012 426 293 72 12 chr11 56065786 56065952 -65777904 - MLT1H2 LTR MaLR -33 456 281 1 1012 377 344 99 0 chr11 56066261 56066392 -65777464 + RSINE1 SINE B4 5 148 -17 1 1012 783 226 10 62 chr11 56068367 56068575 -65775281 + ORR1E LTR MaLR 1 197 -162 1 1012 333 256 105 0 chr11 56068763 56068849 -65775007 + PB1D10 SINE Alu 6 100 -17 1 1012 214 178 0 43 chr11 56069339 56069386 -65774470 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1012 301 169 0 38 chr11 56069499 56069579 -65774277 + GA-rich Low_complexity Low_complexity 2 78 0 1 1012 373 299 0 17 chr11 56069939 56070058 -65773798 - B3A SINE B2 -81 117 1 1 1012 280 326 25 89 chr11 56070412 56070570 -65773286 + RMER30 DNA MER1_type 22 169 -33 1 1012 1931 79 168 0 chr11 56071606 56071886 -65771970 - ORR1A2 LTR MaLR 0 327 1 1 1012 911 291 53 21 chr11 56072095 56072376 -65771480 - B4 SINE B4 -2 290 1 1 1012 213 108 0 0 chr11 56072469 56072506 -65771350 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1 1012 818 122 0 7 chr11 56072548 56072697 -65771159 + (TTC)n Simple_repeat Simple_repeat 2 149 0 1 1012 456 37 0 0 chr11 56072697 56072751 -65771105 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1012 711 112 0 0 chr11 56072751 56072858 -65770998 + (TTC)n Simple_repeat Simple_repeat 1 107 0 1 1012 440 78 0 25 chr11 56072858 56072937 -65770919 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 1 1012 404 238 27 45 chr11 56073510 56073620 -65770236 - B1F SINE Alu -1 148 41 1 1012 22 0 0 0 chr11 56074362 56074384 -65769472 + AT_rich Low_complexity Low_complexity 1 22 0 1 1012 205 196 22 0 chr11 56074807 56074853 -65769003 + (CTA)n Simple_repeat Simple_repeat 2 48 0 1 1012 297 0 0 0 chr11 56074876 56074909 -65768947 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1012 422 269 78 42 chr11 56075028 56075245 -65768611 - RLTR12B LTR ERVK -46 482 258 1 1012 760 305 20 33 chr11 56075244 56075546 -65768310 - RLTR12B LTR ERVK -222 306 9 1 1012 544 310 96 54 chr11 56075539 56075778 -65768078 - B4 SINE B4 -42 250 2 1 1012 24 32 0 0 chr11 56075971 56076002 -65767854 + AT_rich Low_complexity Low_complexity 1 31 0 1 1012 212 189 19 0 chr11 56077914 56077967 -65765889 + GA-rich Low_complexity Low_complexity 1 54 0 1 1012 2085 281 75 51 chr11 56078431 56078566 -65765290 - Lx8 LINE L1 -1 7472 7310 1 1012 441 0 0 0 chr11 56078566 56078615 -65765241 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1012 2085 281 75 51 chr11 56078615 56079316 -65764540 - Lx8 LINE L1 -164 7309 6616 1 1012 489 270 8 8 chr11 56079764 56079891 -65763965 + B1_Mur2 SINE Alu 12 138 -11 1 1012 261 0 0 0 chr11 56079891 56079920 -65763936 + (CATAA)n Simple_repeat Simple_repeat 4 32 0 1 1012 232 107 35 35 chr11 56079936 56079994 -65763862 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 1 1012 252 0 0 0 chr11 56080066 56080094 -65763762 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1012 227 279 37 25 chr11 56080131 56080212 -65763644 - L1MA8 LINE L1 -209 6082 6001 1 1012 1925 184 64 103 chr11 56080627 56081172 -65762684 - RLTR11A LTR ERVK 0 528 5 1 1012 328 334 121 43 chr11 56081266 56081638 -65762218 - L1MA5 LINE L1 -6 6294 5894 1 1012 350 211 44 102 chr11 56081645 56081782 -65762074 - L1MA5 LINE L1 -601 5702 5574 1 1012 2574 259 72 31 chr11 56081825 56082621 -65761235 - Lx8 LINE L1 -1 7472 6645 1 1012 245 109 22 0 chr11 56082803 56082849 -65761007 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1012 659 187 17 6 chr11 56082885 56083051 -65760805 + GA-rich Low_complexity Low_complexity 2 170 0 1 1012 1290 34 6 28 chr11 56083051 56083233 -65760623 + (GGGAGA)n Simple_repeat Simple_repeat 2 179 0 1 1012 219 305 161 0 chr11 56083312 56083561 -65760295 - L2 LINE L2 -1087 2332 2044 1 1012 594 293 35 39 chr11 56083700 56083931 -65759925 - RMER15 LTR ERVL -51 524 295 1 1012 298 247 27 0 chr11 56084717 56084790 -65759066 + CT-rich Low_complexity Low_complexity 2 76 0 1 1012 1398 206 241 85 chr11 56084811 56085226 -65758630 + MT2A LTR ERVL 1 463 -70 1 1012 696 107 0 0 chr11 56085226 56085338 -65758518 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 1012 1398 206 241 85 chr11 56085338 56085383 -65758473 + MT2A LTR ERVL 464 533 0 1 1012 32 26 0 0 chr11 56085462 56085501 -65758355 + AT_rich Low_complexity Low_complexity 1 39 0 1 1012 265 167 0 0 chr11 56085501 56085567 -65758289 + MT2A LTR ERVL 468 533 0 1 1012 296 304 8 43 chr11 56085640 56085757 -65758099 - PB1D10 SINE Alu 0 117 5 1 1012 422 193 105 74 chr11 56086008 56086170 -65757686 - MTEa LTR MaLR -12 367 201 1 1012 229 191 0 0 chr11 56086173 56086220 -65757636 + GA-rich Low_complexity Low_complexity 2 48 0 1 1012 418 205 261 98 chr11 56086229 56086413 -65757443 - MTEa LTR MaLR -165 214 1 1 1012 775 330 7 25 chr11 56087497 56087780 -65756076 + B4A SINE B4 15 292 0 1 1012 211 258 0 31 chr11 56087780 56087844 -65756012 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 1 1012 576 256 184 29 chr11 56088656 56088933 -65754923 + MTE2a LTR MaLR 60 379 0 1 1012 1211 173 4 59 chr11 56090104 56090343 -65753513 - URR1A DNA MER1_type 0 226 1 1 1012 252 302 62 37 chr11 56090614 56090858 -65752998 - L1M4 LINE L1 -852 5294 5045 1 1012 538 282 0 34 chr11 56090862 56091008 -65752848 - ID_B1 SINE B4 0 224 84 1 1012 803 227 165 40 chr11 56091008 56091330 -65752526 + ORR1D2 LTR MaLR 1 362 -8 1 1012 808 184 7 0 chr11 56091544 56091680 -65752176 - B1_Mur4 SINE Alu -13 137 1 1 1012 300 321 110 28 chr11 56091698 56092133 -65751723 - L1M4 LINE L1 -1331 4815 4345 1 1012 448 314 70 20 chr11 56092282 56092526 -65751330 - L1MA4 LINE L1 -368 5932 5677 1 1012 285 135 0 55 chr11 56092768 56092823 -65751033 - MTC LTR MaLR -17 404 353 1 1012 252 326 107 82 chr11 56092857 56093185 -65750671 + L1M2 LINE L1 2248 2583 -3560 1 1012 1445 322 46 12 chr11 56093492 56094079 -65749777 + RMER15-int LTR ERVL 137 743 -4256 1 1012 501 258 0 70 chr11 56094568 56094697 -65749159 + B3A SINE B2 10 129 -69 1 1012 387 0 0 0 chr11 56094726 56094769 -65749087 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1012 895 324 125 24 chr11 56094805 56095261 -65748595 + RMER15-int LTR ERVL 1291 1792 -3207 1 1012 548 233 10 16 chr11 56095793 56095935 -65747921 + MTD LTR MaLR 220 403 -16 1 1012 2007 292 44 21 chr11 56096626 56097301 -65746555 - Lx8 LINE L1 -144 7329 6639 1 1012 886 286 94 22 chr11 56097314 56097675 -65746181 + L1_Mur3 LINE L1 5331 5717 -163 1 1012 448 302 32 0 chr11 56097837 56097963 -65745893 + ID_B1 SINE B4 93 222 -2 1 1012 402 21 0 0 chr11 56098598 56098645 -65745211 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1013 532 295 7 7 chr11 56098896 56099036 -65744820 + RSINE1 SINE B4 12 151 -14 1 1013 23 0 0 0 chr11 56099440 56099463 -65744393 + AT_rich Low_complexity Low_complexity 1 23 0 1 1013 768 22 0 0 chr11 56100128 56100218 -65743638 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 1013 183 80 0 0 chr11 56100218 56100242 -65743614 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1013 6567 142 23 8 chr11 56100243 56100554 -65743302 - Lx LINE L1 -14 6640 6320 1 1013 180 0 0 0 chr11 56100554 56100574 -65743282 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1013 6567 143 23 7 chr11 56100574 56101340 -65742516 - Lx LINE L1 -335 6319 5547 1 1013 265 307 102 6 chr11 56101646 56101813 -65742043 + MIR SINE MIR 2 184 -78 1 1013 333 0 0 0 chr11 56101992 56102029 -65741827 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1013 751 335 18 22 chr11 56102049 56102321 -65741535 - B4 SINE B4 0 292 22 1 1013 1728 171 75 0 chr11 56103215 56103561 -65740295 + ORR1C1 LTR MaLR 7 378 0 1 1013 797 257 127 28 chr11 56105214 56105466 -65738390 + MTE2b LTR MaLR 1 277 -102 1 1013 1274 214 91 9 chr11 56105475 56105795 -65738061 + MTEa LTR MaLR 19 364 -15 1 1013 602 261 35 128 chr11 56105793 56106111 -65737745 - MTEa LTR MaLR -87 292 1 1 1013 925 260 144 40 chr11 56106139 56106492 -65737364 + MTD LTR MaLR 17 406 -13 1 1013 426 310 84 0 chr11 56106502 56106644 -65737212 - RSINE1 SINE B4 -2 163 10 1 1013 260 268 71 96 chr11 56107050 56107248 -65736608 + L1M4b LINE L1 1349 1541 -5467 1 1013 3022 53 3 0 chr11 56107278 56107634 -65736222 + IAPEY2_LTR LTR ERVK 1 357 0 1 1013 704 166 50 50 chr11 56107634 56107793 -65736063 + IAPLTR4_I LTR ERVK 22 180 -1290 1 1013 9462 122 11 54 chr11 56107792 56109316 -65734540 + IAPEY3-int LTR ERVK 524 1982 -5698 1 1013 3556 79 34 0 chr11 56109293 56109763 -65734093 + IAPEY3-int LTR ERVK 2238 2723 -4957 1 1013 488 51 0 0 chr11 56109730 56109789 -65734067 + IAPEY3-int LTR ERVK 4852 4910 -2770 1 1013 5556 72 55 8 chr11 56109789 56110528 -65733328 + IAPEY3-int LTR ERVK 6907 7680 0 1 1013 3131 39 0 0 chr11 56110528 56110885 -65732971 + IAPEY2_LTR LTR ERVK 1 357 0 1 1013 331 221 10 21 chr11 56110948 56111045 -65732811 + (CA)n Simple_repeat Simple_repeat 2 97 0 1 1013 274 195 72 96 chr11 56111045 56111170 -65732686 + L1M4b LINE L1 1623 1744 -5590 1 1013 747 0 0 0 chr11 56111267 56111350 -65732506 + (CAG)n Simple_repeat Simple_repeat 1 83 0 1 1013 180 111 0 0 chr11 56111731 56111758 -65732098 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1 1013 1008 278 31 40 chr11 56113784 56114110 -65729746 - MTE2b LTR MaLR 0 379 57 1 1013 722 230 0 0 chr11 56114482 56114535 -65729321 + ID SINE ID 29 81 -143 1 1013 395 231 0 119 chr11 56114535 56114653 -65729203 + PB1D10 SINE Alu 1 104 -13 1 1013 210 175 39 67 chr11 56114661 56114765 -65729091 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1 1013 228 100 0 0 chr11 56114767 56114807 -65729049 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1013 981 268 36 32 chr11 56114807 56115115 -65728741 + MTEb LTR MaLR 71 379 0 1 1013 312 281 0 0 chr11 56115726 56115808 -65728048 + ID4 SINE ID 1 82 -1 1 1013 1226 48 0 0 chr11 56116563 56116710 -65727146 - B1_Mm SINE Alu 0 147 1 1 1013 321 26 0 0 chr11 56116731 56116769 -65727087 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1013 514 266 93 0 chr11 56117232 56117365 -65726491 + B3A SINE B2 2 147 -51 1 1013 354 107 0 0 chr11 56117365 56117421 -65726435 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1013 337 250 48 0 chr11 56117487 56117571 -65726285 - L1MC4 LINE L1 -1235 6807 6720 1 1013 1010 255 72 12 chr11 56117589 56117923 -65725933 + ORR1E LTR MaLR 1 354 -5 1 1013 1358 227 65 44 chr11 56117999 56118340 -65725516 - ORR1E LTR MaLR -11 348 1 2 1013 1772 155 21 33 chr11 56119116 56119449 -65724407 + ORR1A4 LTR MaLR 1 329 0 2 1013 351 0 0 0 chr11 56119635 56119674 -65724182 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1013 623 320 25 35 chr11 56119683 56119968 -65723888 - B4A SINE B4 -8 284 3 2 1013 278 344 51 25 chr11 56119970 56120128 -65723728 - MIR SINE MIR -82 180 19 2 1013 197 399 16 34 chr11 56120231 56120386 -65723470 - MIR SINE MIR -104 164 13 2 1013 437 228 190 7 chr11 56120951 56121088 -65722768 + B4 SINE B4 2 163 -129 2 1013 596 276 75 25 chr11 56121142 56121343 -65722513 + B3 SINE B2 5 215 -1 2 1013 284 305 12 0 chr11 56121343 56121425 -65722431 + B4A SINE B4 210 292 0 2 1013 225 0 0 0 chr11 56121472 56121497 -65722359 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1013 776 289 5 5 chr11 56122464 56122659 -65721197 + B4 SINE B4 2 196 -96 2 1013 274 300 72 13 chr11 56123215 56123367 -65720489 + MIRb SINE MIR 86 246 -22 2 1013 21 0 0 0 chr11 56123383 56123404 -65720452 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 891 279 175 13 chr11 56124197 56124517 -65719339 + Lx8 LINE L1 6959 7330 -143 2 1013 274 346 0 56 chr11 56124556 56124663 -65719193 + B1_Mur1 SINE Alu 48 148 -1 2 1013 362 278 46 64 chr11 56124663 56124752 -65719104 + B3 SINE B2 2 94 -122 2 1013 1080 108 0 0 chr11 56124752 56124900 -65718956 + B1_Mus1 SINE Alu 1 148 0 2 1013 362 278 46 64 chr11 56124900 56125029 -65718827 + B3 SINE B2 95 216 0 2 1013 678 300 21 5 chr11 56125196 56125390 -65718466 + B3A SINE B2 1 188 -28 2 1013 577 280 121 107 chr11 56125407 56125967 -65717889 + L1MA5 LINE L1 5295 5862 -438 2 1013 447 280 16 179 chr11 56126198 56126511 -65717345 + B4 SINE B4 1 262 -30 2 1013 441 0 0 0 chr11 56126512 56126561 -65717295 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1013 441 0 0 0 chr11 56126561 56126609 -65717247 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1013 374 259 0 111 chr11 56127365 56127491 -65716365 - RSINE1 SINE B4 -51 114 3 2 1013 205 152 0 0 chr11 56127808 56127841 -65716015 + CT-rich Low_complexity Low_complexity 2 34 0 2 1013 387 342 0 27 chr11 56128472 56128707 -65715149 + CT-rich Low_complexity Low_complexity 1 228 0 2 1013 189 147 0 0 chr11 56130540 56130574 -65713282 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 2 1013 277 82 41 0 chr11 56131191 56131240 -65712616 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1013 818 318 18 29 chr11 56131241 56131516 -65712340 - B4A SINE B4 -15 277 6 2 1013 447 344 31 18 chr11 56131565 56131728 -65712128 - RSINE1 SINE B4 0 165 1 2 1013 194 345 15 85 chr11 56131883 56132013 -65711843 + MIRc SINE MIR 82 202 -66 2 1013 293 48 0 0 chr11 56132775 56132817 -65711039 + L1_Mus2 LINE L1 6523 6564 -2 2 1013 256 283 92 58 chr11 56132864 56132984 -65710872 - MER44B DNA MER2_type -1 549 426 2 1013 505 294 7 0 chr11 56132986 56133122 -65710734 - B1_Mur1 SINE Alu -6 143 7 2 1013 486 324 103 48 chr11 56133126 56133418 -65710438 - MER44B DNA MER2_type -119 431 124 2 1013 465 269 5 10 chr11 56133526 56133709 -65710147 + B4A SINE B4 1 284 -8 2 1013 388 319 126 47 chr11 56135132 56135497 -65708359 - MLT1D LTR MaLR -28 477 84 2 1013 918 248 57 129 chr11 56135517 56135920 -65707936 - MTE2a LTR MaLR 0 379 6 2 1013 297 303 178 52 chr11 56136038 56136212 -65707644 - B3A SINE B2 -1 197 2 2 1013 339 323 91 19 chr11 56136219 56136538 -65707318 - L1M5 LINE L1 -2532 3614 3273 2 1013 2045 107 9 51 chr11 56136600 56136936 -65706920 - RLTRETN_Mm LTR ERVK 0 322 1 2 1013 235 265 245 0 chr11 56137082 56137180 -65706676 - L1MB7 LINE L1 -13 6171 6050 2 1013 21 0 0 0 chr11 56137214 56137235 -65706621 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 501 17 0 0 chr11 56137728 56137786 -65706070 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1013 503 232 137 74 chr11 56137799 56138055 -65705801 - B4A SINE B4 -18 274 3 2 1013 243 239 0 0 chr11 56138122 56138189 -65705667 + (CATA)n Simple_repeat Simple_repeat 3 69 0 2 1013 800 262 41 26 chr11 56138321 56138484 -65705372 - L1MB7 LINE L1 -711 5467 5303 2 1013 321 26 0 0 chr11 56138491 56138529 -65705327 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 1013 5979 149 42 6 chr11 56138529 56139502 -65704354 - Lx4A LINE L1 -7 7051 6042 2 1013 800 287 113 49 chr11 56139502 56139624 -65704232 - L1MB7 LINE L1 -844 5302 5162 2 1013 626 234 124 17 chr11 56139624 56139802 -65704054 - B3A SINE B2 0 198 2 2 1013 800 287 113 49 chr11 56139802 56140214 -65703642 - L1MB7 LINE L1 -985 5161 4733 2 1013 450 0 0 0 chr11 56140339 56140389 -65703467 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1013 2335 213 27 42 chr11 56141164 56141461 -65702395 - L1_Rod LINE L1 -3912 1935 1648 2 1013 378 0 0 0 chr11 56141461 56141503 -65702353 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1013 2335 213 27 42 chr11 56141503 56141807 -65702049 - L1_Rod LINE L1 -4200 1647 1343 2 1013 9183 33 21 4 chr11 56141816 56143577 -65700279 - L1Md_F2 LINE L1 0 6582 4781 2 1013 1927 265 55 41 chr11 56143572 56144310 -65699546 - L1_Rod LINE L1 -6253 1355 506 2 1013 947 301 60 4 chr11 56144540 56144807 -65699049 - B4A SINE B4 0 292 11 2 1013 23 68 0 0 chr11 56145102 56145146 -65698710 + AT_rich Low_complexity Low_complexity 1 44 0 2 1013 1610 219 26 3 chr11 56145716 56146055 -65697801 - RMER15 LTR ERVL -36 539 193 2 1013 1404 108 4 22 chr11 56146072 56146299 -65697557 - Lx2 LINE L1 0 6997 6775 2 1013 1814 133 0 0 chr11 56146299 56146562 -65697294 - Lx2 LINE L1 -354 6643 6381 2 1013 340 185 223 21 chr11 56146574 56146668 -65697188 - RMER15 LTR ERVL -436 139 27 2 1013 229 254 0 40 chr11 56146702 56146776 -65697080 - RMER15 LTR ERVL -503 72 2 2 1013 979 249 12 28 chr11 56147518 56147766 -65696090 - B4A SINE B4 -43 249 6 2 1013 240 360 50 0 chr11 56148120 56148220 -65695636 + B4 SINE B4 52 156 -136 2 1013 3603 251 40 57 chr11 56148223 56149360 -65694496 + Lx9 LINE L1 6528 7644 0 2 1013 3761 100 5 29 chr11 56149554 56149891 -65693965 + Lx4A LINE L1 6514 6852 -206 2 1013 5585 144 51 3 chr11 56149891 56150805 -65693051 - RMER17B LTR ERVK 0 958 1 2 1013 3761 100 5 29 chr11 56150805 56151025 -65692831 + Lx4A LINE L1 6853 7058 0 2 1013 592 287 0 0 chr11 56151351 56151494 -65692362 - MTE2b LTR MaLR -236 143 1 2 1013 26 0 0 0 chr11 56151736 56151762 -65692094 + AT_rich Low_complexity Low_complexity 1 26 0 2 1013 1458 55 0 0 chr11 56151792 56151973 -65691883 - L1_Mus1 LINE L1 0 6567 6387 2 1013 724 282 85 39 chr11 56155501 56155759 -65688097 + B4A SINE B4 1 270 -22 2 1013 1116 89 0 0 chr11 56155941 56156087 -65687769 + B1_Mus2 SINE Alu 2 147 0 2 1013 866 234 14 60 chr11 56156173 56156391 -65687465 - B3 SINE B2 -8 208 1 2 1013 813 280 88 44 chr11 56157198 56157583 -65686273 + MTD LTR MaLR 1 402 -17 2 1013 619 239 12 31 chr11 56157720 56157880 -65685976 + B3A SINE B2 1 157 -41 2 1013 360 77 0 0 chr11 56158204 56158256 -65685600 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 2 1013 3419 227 75 14 chr11 56158267 56159009 -65684847 - RMER1C Other Other -29 1313 526 2 1013 769 288 52 45 chr11 56159167 56159454 -65684402 + ORR1E LTR MaLR 7 295 -64 2 1013 2158 177 34 14 chr11 56159677 56160090 -65683766 - MTC LTR MaLR 0 421 1 2 1013 596 264 143 50 chr11 56160212 56160471 -65683385 + ORR1E LTR MaLR 57 336 -34 2 1013 457 231 93 8 chr11 56162615 56162733 -65681123 + B1F SINE Alu 12 139 -10 2 1013 719 314 63 30 chr11 56162759 56163028 -65680828 + B4 SINE B4 10 287 -5 2 1013 205 281 33 11 chr11 56163254 56163344 -65680512 + MER5A DNA MER1_type 13 104 -85 2 1013 219 69 0 0 chr11 56163487 56163516 -65680340 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 2 1013 202 410 14 7 chr11 56165044 56165184 -65678672 - L2 LINE L2 -509 2910 2770 2 1013 575 345 47 76 chr11 56166186 56166462 -65677394 + B4A SINE B4 2 269 -23 2 1013 233 229 33 0 chr11 56166503 56166564 -65677292 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1013 351 0 0 0 chr11 56168562 56168601 -65675255 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1013 237 235 148 34 chr11 56169908 56169996 -65673860 + L2a LINE L2 3328 3425 -1 2 1013 251 255 0 0 chr11 56170423 56170474 -65673382 + C-rich Low_complexity Low_complexity 3 53 0 2 1013 621 309 100 4 chr11 56170535 56170795 -65673061 - B4A SINE B4 -3 289 5 2 1013 40 49 0 0 chr11 56170957 56171018 -65672838 + AT_rich Low_complexity Low_complexity 1 61 0 2 1013 765 294 95 27 chr11 56171757 56172019 -65671837 - B4A SINE B4 -6 286 7 2 1013 649 122 34 0 chr11 56172091 56172238 -65671618 + CT-rich Low_complexity Low_complexity 1 152 0 2 1013 526 319 56 74 chr11 56172607 56173038 -65670818 - MTD LTR MaLR -16 403 5 2 1013 4306 158 157 12 chr11 56173241 56173834 -65670022 + Lx4B LINE L1 559 1254 -5832 2 1013 213 65 0 0 chr11 56173834 56173865 -65669991 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1013 4306 117 48 10 chr11 56173865 56174530 -65669326 + Lx4B LINE L1 1255 1941 -3936 2 1013 351 0 0 0 chr11 56174530 56174569 -65669287 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1013 4306 117 48 10 chr11 56174569 56174670 -65669186 + Lx4B LINE L1 1942 2052 -3825 2 1013 10291 131 47 7 chr11 56174695 56176580 -65667276 + Lx4B LINE L1 3204 5163 -714 2 1013 1819 96 4 0 chr11 56176586 56176835 -65667021 - MTB_Mm LTR MaLR 0 407 158 2 1013 2639 117 9 26 chr11 56176828 56177248 -65666608 - MTB_Mm-int LTR MaLR -486 1477 1065 2 1013 523 108 0 0 chr11 56177232 56177306 -65666550 - MTB_Mm-int LTR MaLR -1020 78 5 2 1013 2832 93 28 10 chr11 56177309 56177709 -65666147 - MTB_Mm LTR MaLR 0 407 1 2 1013 8399 150 18 3 chr11 56177712 56179570 -65664286 + Lx4B LINE L1 5170 7058 0 2 1013 258 284 144 52 chr11 56180122 56180393 -65663463 + L1MDa LINE L1 955 1250 -5383 2 1013 643 264 37 27 chr11 56180444 56180631 -65663225 - B3A SINE B2 -8 190 2 2 1013 354 282 54 18 chr11 56180728 56180840 -65663016 + L1MDa LINE L1 1391 1506 -5127 2 1013 457 96 0 27 chr11 56181007 56181082 -65662774 - L1_Mus4 LINE L1 -749 5887 5815 2 1013 2097 65 6 82 chr11 56181070 56181413 -65662443 - L1Md_F3 LINE L1 -274 6702 6222 2 1013 830 156 0 23 chr11 56181444 56181621 -65662235 + A-rich Low_complexity Low_complexity 3 175 0 2 1013 351 209 22 0 chr11 56182113 56182204 -65661652 + L1MDa LINE L1 3154 3246 -3291 2 1013 222 339 54 18 chr11 56182337 56182448 -65661408 + PB1D9 SINE Alu 1 115 -5 2 1013 378 309 119 10 chr11 56182700 56182893 -65660963 + L1MDa LINE L1 3612 3825 -2712 2 1013 535 57 0 0 chr11 56182933 56183003 -65660853 - L1_Mus1 LINE L1 -410 6157 6088 2 1013 2678 63 6 25 chr11 56183003 56183363 -65660493 + L1_Mus1 LINE L1 6215 6567 0 2 1013 804 299 41 0 chr11 56183370 56183708 -65660148 + L1MDa LINE L1 3866 4217 -2320 2 1013 717 261 87 44 chr11 56183778 56184030 -65659826 + B4 SINE B4 2 264 -28 2 1013 593 27 13 0 chr11 56184044 56184119 -65659737 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1013 626 296 103 12 chr11 56184346 56184842 -65659014 + L1MDa LINE L1 4679 5219 -1318 2 1013 315 291 0 26 chr11 56184942 56185055 -65658801 + A-rich Low_complexity Low_complexity 3 112 0 3 1013 1222 271 46 8 chr11 56185102 56185496 -65658360 + Lx8 LINE L1 6732 7140 -333 3 1013 784 241 57 92 chr11 56185881 56186109 -65657747 - Lx5 LINE L1 -9 7049 6830 3 1013 662 252 79 4 chr11 56186063 56186264 -65657592 + Lx5 LINE L1 6532 6772 -286 3 1013 1722 308 45 31 chr11 56186260 56187059 -65656797 + Lx8 LINE L1 6118 6927 -546 3 1013 584 308 30 56 chr11 56187059 56187293 -65656563 - B4 SINE B4 -63 229 2 3 1013 203 283 67 50 chr11 56187782 56187901 -65655955 - L2c LINE L2 -219 3168 3048 3 1013 285 286 19 125 chr11 56189053 56189157 -65654699 - PB1D9 SINE Alu 0 120 28 3 1013 1246 167 9 9 chr11 56189589 56189813 -65654043 - URR1B DNA MER1_type 0 225 2 3 1013 547 270 103 43 chr11 56189996 56190278 -65653578 + MTEb LTR MaLR 39 337 -42 3 1013 249 102 27 55 chr11 56191406 56191479 -65652377 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 3 1013 183 278 92 34 chr11 56192147 56192266 -65651590 - MIRb SINE MIR -31 237 112 3 1013 242 290 14 0 chr11 56192616 56192685 -65651171 - ID4 SINE ID -12 71 2 3 1013 201 176 0 0 chr11 56192895 56192929 -65650927 + T-rich Low_complexity Low_complexity 1 34 0 3 1013 3312 42 7 5 chr11 56193403 56193814 -65650042 + L1Md_F2 LINE L1 6166 6577 -5 3 1013 505 281 8 65 chr11 56193830 56194017 -65649839 + B3A SINE B2 27 216 0 3 1013 267 103 0 0 chr11 56194017 56194056 -65649800 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 3 1013 964 293 80 8 chr11 56194130 56194656 -65649200 - L1MD LINE L1 -3204 2942 2379 3 1013 238 300 46 8 chr11 56194657 56194788 -65649068 - L1MD LINE L1 -3722 2424 2289 3 1013 411 221 0 0 chr11 56195062 56195189 -65648667 + (TG)n Simple_repeat Simple_repeat 2 128 0 3 1013 375 324 87 49 chr11 56195617 56195802 -65648054 - MLT1A LTR MaLR -163 211 20 3 1013 270 263 18 40 chr11 56196670 56196947 -65646909 + GA-rich Low_complexity Low_complexity 1 270 0 3 1013 435 118 0 42 chr11 56197156 56197227 -65646629 - B3 SINE B2 -146 70 3 3 1013 962 307 64 83 chr11 56197526 56197935 -65645921 - MTD LTR MaLR -17 402 2 3 1013 328 269 259 66 chr11 56199008 56199251 -65644605 - B4 SINE B4 -2 290 1 3 1013 770 303 70 16 chr11 56199532 56199790 -65644066 + B4A SINE B4 1 272 -20 3 1013 348 111 0 0 chr11 56199870 56199924 -65643932 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1013 459 206 0 0 chr11 56200359 56200539 -65643317 + (CTG)n Simple_repeat Simple_repeat 1 180 0 3 1013 214 152 0 0 chr11 56200541 56200574 -65643282 + (ATGGTG)n Simple_repeat Simple_repeat 5 37 0 3 1013 719 154 0 7 chr11 56200964 56201101 -65642755 + (TA)n Simple_repeat Simple_repeat 1 136 0 3 1013 233 284 95 0 chr11 56201229 56201303 -65642553 - PB1D7 SINE Alu -17 103 23 3 1013 307 211 61 91 chr11 56201237 56201336 -65642520 - ID_B1 SINE B4 -52 172 77 3 1013 705 106 0 0 chr11 56201364 56201468 -65642388 + (TTCC)n Simple_repeat Simple_repeat 2 105 0 3 1013 648 279 17 4 chr11 56202279 56202504 -65641352 + L1MA6 LINE L1 5582 5838 -462 3 1013 2609 195 33 68 chr11 56202766 56203403 -65640453 - RLTR18 LTR ERVK -1 615 1 3 1013 306 324 75 34 chr11 56203600 56203987 -65639869 + L1MA6 LINE L1 5873 6275 -25 3 1013 262 318 23 0 chr11 56204377 56204465 -65639391 - L2a LINE L2 -46 3380 3291 3 1013 372 295 96 55 chr11 56204519 56204732 -65639124 + MLT2B3 LTR ERVL 1 223 -331 3 1013 1229 243 72 25 chr11 56204732 56205091 -65638765 + MTEb LTR MaLR 1 376 -3 3 1013 338 327 101 29 chr11 56205226 56205465 -65638391 + MLT2B3 LTR ERVL 316 567 0 3 1013 360 211 37 28 chr11 56206069 56206176 -65637680 - L1MCa LINE L1 -914 5650 5543 3 1013 510 302 30 49 chr11 56206178 56206434 -65637422 - MTE2a LTR MaLR -155 264 17 3 1013 448 257 27 11 chr11 56206473 56206658 -65637198 - L1MCa LINE L1 -1105 5459 5272 3 1013 957 256 21 174 chr11 56206660 56207054 -65636802 + MTE2a LTR MaLR 2 337 -42 3 1013 1531 192 195 84 chr11 56207054 56207532 -65636324 - MT2A LTR ERVL 0 533 3 3 1013 957 256 21 174 chr11 56207532 56207567 -65636289 + MTE2a LTR MaLR 338 365 -14 3 1013 226 253 138 6 chr11 56207582 56207741 -65636115 - L1MCa LINE L1 -1314 5250 5071 3 1013 36246 43 0 3 chr11 56207728 56213954 -65629902 - L1Md_T LINE L1 0 6585 278 3 1013 1520 298 71 25 chr11 56213963 56215008 -65628848 - L1MCa LINE L1 -1469 5095 4003 3 1013 296 258 0 0 chr11 56215064 56215126 -65628730 + ID4 SINE ID 3 64 -19 3 1013 384 283 136 37 chr11 56215153 56215726 -65628130 - L1MCa LINE L1 -4698 2053 1424 3 1013 337 324 18 35 chr11 56215738 56215965 -65627891 - L1MCa LINE L1 -5475 1276 969 3 1013 525 32 0 0 chr11 56215965 56216028 -65627828 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 3 1013 625 235 58 39 chr11 56216304 56216459 -65627397 + RSINE1 SINE B4 8 165 0 3 1013 333 0 0 0 chr11 56216614 56216651 -65627205 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1013 459 0 0 0 chr11 56216651 56216701 -65627155 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1013 337 264 15 1 chr11 56216784 56216904 -65626952 - L1M2 LINE L1 -1955 4191 4065 3 1013 18081 67 4 7 chr11 56216902 56220125 -65623731 - L1Md_F2 LINE L1 0 6582 3373 3 1013 405 0 0 0 chr11 56220125 56220170 -65623686 + (CTTA)n Simple_repeat Simple_repeat 3 47 0 3 1013 2102 124 38 0 chr11 56221023 56221338 -65622518 - ORR1A2 LTR MaLR 0 327 1 3 1013 566 186 23 11 chr11 56222778 56222952 -65620904 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 3 1013 279 0 0 0 chr11 56222953 56222984 -65620872 + (CATA)n Simple_repeat Simple_repeat 1 31 0 3 1013 508 324 0 0 chr11 56222988 56223158 -65620698 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 3 1013 213 231 15 30 chr11 56223411 56223478 -65620378 + A-rich Low_complexity Low_complexity 2 67 0 3 1013 817 240 67 0 chr11 56223658 56223837 -65620019 - ID_B1 SINE B4 -8 216 26 3 1013 230 343 0 41 chr11 56223780 56223853 -65620003 - ID4 SINE ID -2 81 12 3 1013 468 319 0 21 chr11 56225970 56226111 -65617745 + ID_B1 SINE B4 82 219 -5 3 1013 473 71 14 0 chr11 56226251 56226321 -65617535 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1013 2710 78 62 16 chr11 56226382 56226770 -65617086 - MTB_Mm LTR MaLR 0 407 2 3 1013 5841 146 99 25 chr11 56226771 56227285 -65616571 - MTB_Mm-int LTR MaLR 0 1258 668 3 1013 3086 17 0 11 chr11 56227285 56227635 -65616221 - ORR1A0 LTR MaLR 0 346 1 3 1013 5841 146 99 25 chr11 56227635 56228289 -65615567 - MTB_Mm-int LTR MaLR -591 667 3 3 1013 2631 80 81 13 chr11 56228289 56228670 -65615186 - MTB_Mm LTR MaLR 0 407 1 3 1013 1820 228 21 28 chr11 56229073 56229497 -65614359 - MTC LTR MaLR 0 421 1 3 126 3692 166 42 6 chr11 56229632 56230291 -65613565 - Lx4B LINE L1 -4 7054 6372 3 1014 716 94 0 8 chr11 56230293 56230422 -65613434 - L1Md_F2 LINE L1 -3 6579 6452 3 1014 12159 147 35 36 chr11 56230423 56232475 -65611381 - Lx4B LINE L1 -671 6387 4297 3 1014 1116 103 0 0 chr11 56232475 56232621 -65611235 + B1_Mus2 SINE Alu 2 147 0 3 1014 12159 146 31 36 chr11 56232621 56232973 -65610883 - Lx4B LINE L1 -1581 4296 3983 3 1014 886 97 229 13 chr11 56232973 56233130 -65610726 - B2_Mm2 SINE B2 -4 191 1 3 1014 12159 146 31 36 chr11 56233130 56233628 -65610228 - Lx4B LINE L1 -1895 3982 3488 3 1014 6139 157 45 10 chr11 56233629 56234077 -65609779 - Lx4B LINE L1 -3374 2503 2050 3 1014 435 52 0 0 chr11 56234077 56234135 -65609721 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1014 6139 160 46 11 chr11 56234135 56234991 -65608865 - Lx4B LINE L1 -3828 2049 1160 3 1014 2703 73 5 8 chr11 56234991 56235364 -65608492 - L1Md_F2 LINE L1 -2 6580 6209 3 1014 1298 205 67 24 chr11 56235364 56235612 -65608244 - Lx4B LINE L1 -5927 1159 908 3 1014 3257 155 18 7 chr11 56236015 56236568 -65607288 - ORR1A2-int LTR MaLR -1403 560 2 3 1014 2089 94 55 61 chr11 56236569 56236898 -65606958 - ORR1A2 LTR MaLR 0 327 1 3 1014 566 203 7 0 chr11 56236931 56237084 -65606772 + (TG)n Simple_repeat Simple_repeat 1 154 0 3 1014 405 70 0 0 chr11 56237099 56237156 -65606700 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1014 311 353 55 62 chr11 56237999 56238250 -65605606 + L1MD3 LINE L1 6667 6875 -1120 3 1014 225 0 0 0 chr11 56238416 56238441 -65605415 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1014 513 84 0 0 chr11 56238441 56238511 -65605345 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1014 455 260 149 36 chr11 56239912 56240150 -65603706 + ORR1E LTR MaLR 81 369 -10 3 1014 251 389 25 37 chr11 56240251 56240414 -65603442 - Charlie4z DNA MER1_type -1 166 6 3 1014 351 0 0 0 chr11 56240443 56240482 -65603374 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1014 897 332 54 7 chr11 56240495 56240771 -65603085 - B4A SINE B4 0 292 4 3 1014 369 0 0 0 chr11 56241174 56241215 -65602641 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1014 1699 28 0 0 chr11 56241719 56241930 -65601926 - L1Md_F2 LINE L1 -529 6053 5843 3 1014 4014 73 0 36 chr11 56241930 56242487 -65601369 + L1Md_F2 LINE L1 6045 6581 -1 3 1014 396 366 34 23 chr11 56242533 56242709 -65601147 - B3A SINE B2 -5 193 16 3 1014 265 225 41 27 chr11 56242691 56242764 -65601092 - B3A SINE B2 -124 74 1 3 1014 603 40 0 0 chr11 56242864 56242938 -65600918 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 3 1014 261 359 0 73 chr11 56242951 56243116 -65600740 - RSINE1 SINE B4 -11 154 2 3 1014 1099 48 21 0 chr11 56243733 56243878 -65599978 - L1Md_F2 LINE L1 -12 6570 6423 3 1014 625 339 20 47 chr11 56244139 56244439 -65599417 - B4 SINE B4 0 292 1 3 1014 333 118 0 0 chr11 56245002 56245053 -65598803 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1014 985 318 40 18 chr11 56245053 56245372 -65598484 - RMER15 LTR ERVL -40 535 207 3 1014 405 0 0 0 chr11 56245713 56245758 -65598098 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1014 259 243 52 39 chr11 56246922 56246999 -65596857 + MTD LTR MaLR 1 78 -343 3 1014 643 218 6 43 chr11 56247061 56247224 -65596632 + Lx6 LINE L1 7304 7460 0 3 1014 1082 268 76 24 chr11 56247239 56247568 -65596288 + MTD LTR MaLR 74 419 0 3 1014 933 249 122 21 chr11 56247934 56248133 -65595723 - MTD LTR MaLR 0 419 197 3 1014 443 316 95 7 chr11 56248133 56248270 -65595586 + RSINE1 SINE B4 3 151 -14 3 1014 435 348 111 28 chr11 56248328 56248724 -65595132 - BLACKJACK DNA AcHobo -1427 1517 1089 3 1014 268 273 90 9 chr11 56248962 56249073 -65594783 + L1M4 LINE L1 4832 4951 -1195 3 1014 306 329 142 37 chr11 56249101 56249347 -65594509 + L1M4 LINE L1 4963 5234 -912 3 1014 696 269 7 0 chr11 56249410 56249555 -65594301 + B3A SINE B2 26 171 -27 3 1014 348 111 0 0 chr11 56249556 56249610 -65594246 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1014 587 234 28 49 chr11 56249828 56249972 -65593884 - B1_Mur1 SINE Alu 0 149 9 3 1014 750 281 0 51 chr11 56250202 56250397 -65593459 - B3A SINE B2 -4 194 10 3 1014 220 338 39 39 chr11 56250329 56250406 -65593450 - RSINE1 SINE B4 -87 78 2 3 1014 246 234 20 78 chr11 56250410 56250512 -65593344 + L1M4 LINE L1 5821 5916 -263 3 1014 891 212 10 64 chr11 56251331 56251533 -65592323 - B3A SINE B2 -2 196 6 4 1014 233 267 17 0 chr11 56251623 56251683 -65592173 - MER5B DNA MER1_type -52 126 66 4 1014 353 328 125 54 chr11 56251868 56252148 -65591708 + L1MC4 LINE L1 6830 7129 -913 4 1014 310 255 26 58 chr11 56252164 56252318 -65591538 + L1MC4 LINE L1 7178 7326 -716 4 1014 189 0 0 0 chr11 56253088 56253109 -65590747 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1014 1281 59 0 0 chr11 56253693 56253899 -65589957 + (TG)n Simple_repeat Simple_repeat 1 206 0 4 1014 190 322 67 34 chr11 56254225 56254344 -65589512 + L3b LINE CR1 230 352 -130 4 1014 2718 258 103 32 chr11 56254364 56255300 -65588556 + Lx9 LINE L1 6058 7191 -453 4 1014 556 214 47 33 chr11 56255527 56255677 -65588179 + Lx9 LINE L1 7319 7470 -174 4 1014 279 0 0 0 chr11 56256331 56256362 -65587494 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1014 446 258 6 0 chr11 56256363 56256522 -65587334 + (TATG)n Simple_repeat Simple_repeat 1 160 0 4 1014 729 287 32 43 chr11 56256543 56256823 -65587033 - B4A SINE B4 -12 280 4 4 1014 859 254 66 5 chr11 56257053 56257251 -65586605 + B3 SINE B2 6 215 -1 4 1014 1294 219 38 78 chr11 56258075 56258446 -65585410 + ORR1E LTR MaLR 4 359 0 4 1014 3153 48 5 8 chr11 56258455 56258852 -65585004 - MTA_Mm LTR MaLR 0 396 1 4 1014 219 36 0 0 chr11 56259026 56259054 -65584802 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1014 1080 95 0 0 chr11 56259054 56259191 -65584665 - B1_Mus1 SINE Alu -10 138 2 4 1014 324 0 0 0 chr11 56259194 56259230 -65584626 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1014 41 17 0 17 chr11 56259334 56259361 -65584495 + AT_rich Low_complexity Low_complexity 1 27 0 4 1014 4798 197 40 7 chr11 56259361 56260371 -65583485 - Lx3C LINE L1 -2 6974 5932 4 1014 41 17 0 17 chr11 56260371 56260402 -65583454 + AT_rich Low_complexity Low_complexity 1 31 0 4 1014 424 315 0 0 chr11 56260432 56260524 -65583332 + RSINE1 SINE B4 4 95 -70 4 1014 359 286 0 12 chr11 56260525 56260610 -65583246 + PB1D10 SINE Alu 33 116 -1 4 1014 676 264 6 36 chr11 56261025 56261190 -65582666 - RSINE1 SINE B4 -4 161 2 4 1014 741 311 76 4 chr11 56261289 56261564 -65582292 - MTE2b LTR MaLR -85 294 1 4 1014 777 278 38 19 chr11 56261576 56261789 -65582067 - B4A SINE B4 -74 218 2 4 1014 727 89 14 69 chr11 56261889 56262034 -65581822 + L1Md_F3 LINE L1 6448 6584 0 4 1014 368 372 46 34 chr11 56263177 56263439 -65580417 + MLT1H1 LTR MaLR 93 357 -198 4 1014 521 299 208 42 chr11 56263857 56264122 -65579734 - ORR1E LTR MaLR 0 359 51 4 1014 920 314 54 90 chr11 56265718 56266517 -65577339 + L1MA6 LINE L1 5531 6300 0 4 1014 443 256 0 0 chr11 56266520 56266602 -65577254 + RSINE1 SINE B4 3 84 -81 4 1014 482 249 0 6 chr11 56268181 56268355 -65575501 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 1014 320 352 106 42 chr11 56269266 56269746 -65574110 + L1M4 LINE L1 3583 4093 -2053 4 1014 404 92 31 0 chr11 56269848 56269913 -65573943 + (TATG)n Simple_repeat Simple_repeat 1 67 0 4 1014 4522 139 25 1 chr11 56269937 56270705 -65573151 - Lx2B LINE L1 -628 6372 5587 4 1014 3481 70 4 15 chr11 56270766 56271231 -65572625 - L1Md_F2 LINE L1 -14 6568 6109 4 1014 8562 62 2 1 chr11 56271231 56272611 -65571245 + L1Md_F2 LINE L1 4730 6111 -473 4 1014 1129 214 0 0 chr11 56272609 56272824 -65571032 - Lx2B LINE L1 -305 5578 5364 4 1014 234 136 0 0 chr11 56273763 56273807 -65570049 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1014 556 122 0 0 chr11 56273851 56273925 -65569931 + ID4 SINE ID 2 75 -8 4 1014 279 0 0 0 chr11 56274051 56274082 -65569774 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1014 280 59 19 19 chr11 56274785 56274837 -65569019 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 4 1014 28 29 0 0 chr11 56274874 56274909 -65568947 + AT_rich Low_complexity Low_complexity 1 35 0 4 1014 21 0 0 0 chr11 56275338 56275359 -65568497 + AT_rich Low_complexity Low_complexity 1 21 0 4 1014 22 0 0 0 chr11 56275480 56275502 -65568354 + AT_rich Low_complexity Low_complexity 1 22 0 4 1014 6083 154 8 0 chr11 56276092 56277199 -65566657 - L1_Mur2 LINE L1 -507 5370 4255 4 1014 6775 157 47 7 chr11 56277199 56278548 -65565308 + L1_Mur2 LINE L1 2806 4208 -1678 4 1014 776 256 36 36 chr11 56278687 56278906 -65564950 + ID_B1 SINE B4 5 223 -1 4 1014 300 318 13 19 chr11 56279229 56279386 -65564470 + Lx9 LINE L1 7168 7323 -321 4 1014 574 271 23 107 chr11 56279538 56279753 -65564103 + B3A SINE B2 2 198 0 4 1014 363 287 112 71 chr11 56280384 56280695 -65563161 - Lx8 LINE L1 -6 7467 7144 4 1014 285 98 0 0 chr11 56280918 56280959 -65562897 + (CCCCCT)n Simple_repeat Simple_repeat 6 46 0 4 1014 21 36 0 0 chr11 56280980 56281008 -65562848 + AT_rich Low_complexity Low_complexity 1 28 0 4 1014 322 287 70 47 chr11 56281025 56281153 -65562703 + B1F2 SINE Alu 1 131 -18 4 1014 246 316 25 25 chr11 56281185 56281266 -65562590 + ID4_ SINE ID 3 83 0 4 1014 255 348 62 28 chr11 56281759 56281904 -65561952 + MER5A1 DNA MER1_type 13 162 -4 4 1014 1912 222 14 3 chr11 56281978 56282343 -65561513 - ORR1D1 LTR MaLR -5 369 1 4 1014 340 94 0 179 chr11 56282344 56282422 -65561434 + MTEb LTR MaLR 316 379 0 4 1014 371 348 0 11 chr11 56282582 56282762 -65561094 + CT-rich Low_complexity Low_complexity 3 180 0 4 1014 388 258 144 8 chr11 56283106 56283231 -65560625 + RSINE1 SINE B4 3 144 -21 4 1014 198 71 0 0 chr11 56283635 56283663 -65560193 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 4 1014 191 316 71 31 chr11 56284271 56284369 -65559487 + MIRb SINE MIR 23 124 -144 4 1014 1623 217 55 46 chr11 56285243 56285658 -65558198 - MTD LTR MaLR 0 419 1 4 1014 1171 75 0 0 chr11 56285978 56286125 -65557731 + B1_Mm SINE Alu 1 147 0 4 1014 348 24 0 0 chr11 56286125 56286166 -65557690 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1014 3037 132 23 0 chr11 56286174 56286691 -65557165 - Lx LINE L1 -46 5837 5309 4 1014 5077 136 31 10 chr11 56286692 56287504 -65556352 + Lx LINE L1 5823 6651 -3 4 1014 411 262 0 0 chr11 56287518 56287598 -65556258 + ID SINE ID 2 81 -143 4 1014 4570 199 20 25 chr11 56287612 56288694 -65555162 + L1_Mur3 LINE L1 4189 5265 -615 4 1014 1870 155 52 9 chr11 56288695 56289040 -65554816 + RMER1A Other Other 654 1013 -17 4 1014 1070 195 190 11 chr11 56289033 56289334 -65554522 + L1_Mur3 LINE L1 5275 5594 -286 4 1014 2298 222 21 14 chr11 56289331 56289894 -65553962 - Lx7 LINE L1 -1264 6432 5866 4 1014 1032 258 114 21 chr11 56290103 56290534 -65553322 - Lx8 LINE L1 -32 7441 6971 4 1014 261 0 0 0 chr11 56290834 56290863 -65552993 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1014 312 383 27 45 chr11 56290874 56291098 -65552758 - MT2A LTR ERVL -313 220 1 4 1014 183 80 0 0 chr11 56292154 56292179 -65551677 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1014 1059 52 81 0 chr11 56292179 56292315 -65551541 - B1_Mus2 SINE Alu 0 147 1 4 1014 402 21 0 0 chr11 56292524 56292571 -65551285 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1014 230 274 39 0 chr11 56292572 56292623 -65551233 - B3 SINE B2 -54 162 110 4 1014 33 43 0 0 chr11 56293333 56293380 -65550476 + AT_rich Low_complexity Low_complexity 1 47 0 4 1014 261 83 0 0 chr11 56294132 56294168 -65549688 + (TGG)n Simple_repeat Simple_repeat 3 38 0 4 1014 347 236 9 43 chr11 56294402 56294517 -65549339 + L1M1 LINE L1 5497 5607 -696 4 1014 484 346 96 46 chr11 56294517 56294735 -65549121 + B4A SINE B4 1 229 -63 4 1014 217 211 0 37 chr11 56294783 56294837 -65549019 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 4 1014 258 171 0 0 chr11 56296403 56296444 -65547412 - MIR SINE MIR -110 152 112 4 1014 188 263 0 17 chr11 56296950 56297008 -65546848 - MIR SINE MIR -128 134 78 4 1014 255 316 67 41 chr11 56297111 56297306 -65546550 - RMER20B LTR ERVK 0 516 317 4 1014 398 295 24 24 chr11 56297445 56297570 -65546286 - RMER20B LTR ERVK -502 125 1 4 1014 405 219 0 50 chr11 56298563 56298664 -65545192 - ORR1D2 LTR MaLR -267 103 8 4 1014 645 294 19 65 chr11 56298650 56298865 -65544991 - B4A SINE B4 -86 206 2 4 1014 314 337 11 0 chr11 56299543 56299638 -65544218 - PB1 SINE Alu -12 115 20 4 1014 210 216 19 19 chr11 56299718 56299770 -65544086 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 4 1014 1065 263 81 3 chr11 56299801 56300133 -65543723 - Lx8 LINE L1 -96 7377 7020 4 1014 300 316 19 84 chr11 56301611 56301628 -65542228 + ID SINE ID 70 79 -145 4 1014 391 314 13 133 chr11 56301628 56301786 -65542070 + B1F1 SINE Alu 4 142 -7 4 1014 198 223 176 48 chr11 56302161 56302273 -65541583 + MIRc SINE MIR 54 173 -95 4 1014 4431 135 46 52 chr11 56303398 56304329 -65539527 + L1Md_T LINE L1 280 1205 -5411 4 1014 34776 32 0 0 chr11 56304335 56308752 -65535104 + L1Md_T LINE L1 1170 5586 -297 4 1014 8073 53 0 0 chr11 56308752 56309747 -65534109 + L1Md_T LINE L1 5587 6581 -1 4 1014 189 0 0 0 chr11 56309857 56309878 -65533978 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1014 564 15 0 0 chr11 56309878 56309942 -65533914 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1014 1637 179 82 98 chr11 56309943 56310014 -65533842 - ORR1B2 LTR MaLR -2 365 322 4 1014 1078 103 0 14 chr11 56310014 56310162 -65533694 - B1_Mus1 SINE Alu -1 147 2 4 1014 1637 179 82 98 chr11 56310162 56310325 -65533531 - ORR1B2 LTR MaLR -46 321 166 4 1014 630 0 0 0 chr11 56310325 56310395 -65533461 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 1014 1637 179 82 98 chr11 56310395 56310525 -65533331 - ORR1B2 LTR MaLR -202 165 7 4 1014 405 0 0 0 chr11 56310525 56310570 -65533286 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1014 1017 298 62 4 chr11 56312011 56312287 -65531569 - B4 SINE B4 0 292 1 4 1014 663 259 115 160 chr11 56312892 56313311 -65530545 - MTD LTR MaLR -21 400 1 4 1014 449 356 16 0 chr11 56313709 56313937 -65529919 + B4A SINE B4 5 270 -22 4 1014 453 19 0 0 chr11 56314310 56314364 -65529492 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1014 450 0 0 0 chr11 56314364 56314413 -65529443 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1014 228 229 27 41 chr11 56315294 56315367 -65528489 + MLT1A0 LTR MaLR 294 365 0 4 1014 585 0 0 0 chr11 56315613 56315678 -65528178 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 5 1014 222 242 0 29 chr11 56315832 56315900 -65527956 + CT-rich Low_complexity Low_complexity 2 67 0 5 1014 329 282 35 23 chr11 56316066 56316153 -65527703 - RMER15 LTR ERVL -152 423 336 5 1014 460 327 38 57 chr11 56316603 56316762 -65527094 - B3A SINE B2 -35 163 8 5 1014 24 0 0 0 chr11 56316803 56316827 -65527029 + AT_rich Low_complexity Low_complexity 1 24 0 5 1014 387 310 130 17 chr11 56316851 56317028 -65526828 - B4A SINE B4 -14 278 82 5 1014 194 0 39 0 chr11 56317028 56317054 -65526802 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 5 1014 237 289 7 66 chr11 56317061 56317111 -65526745 - BC1_Mm scRNA scRNA -23 129 1 5 1014 415 188 23 23 chr11 56317111 56317198 -65526658 - B4A SINE B4 -205 87 1 5 1014 228 416 34 0 chr11 56318193 56318342 -65525514 + MER58A DNA MER1_type 23 176 -48 5 1014 270 0 0 0 chr11 56319055 56319085 -65524771 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1014 956 285 13 142 chr11 56320707 56321087 -65522769 + MTE2a LTR MaLR 1 331 -48 5 1014 465 19 0 0 chr11 56321088 56321142 -65522714 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1014 227 313 0 29 chr11 56321218 56321287 -65522569 + BC1_Mm scRNA scRNA 15 81 -71 5 1014 1082 141 43 5 chr11 56322152 56322337 -65521519 + B2_Mm2 SINE B2 1 192 -3 5 1014 263 62 0 0 chr11 56322577 56322609 -65521247 + RMER17D2 LTR ERVK 10 41 -768 5 1014 308 43 22 0 chr11 56322756 56322802 -65521054 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 1014 352 299 46 39 chr11 56323253 56323406 -65520450 + RMER15 LTR ERVL 409 562 -13 5 1014 580 329 32 0 chr11 56323931 56324086 -65519770 + B3A SINE B2 1 160 -38 5 1014 2861 213 22 7 chr11 56324086 56324673 -65519183 - Lx5 LINE L1 -400 6650 6055 5 1014 1507 289 68 40 chr11 56324722 56325661 -65518195 + MTC-int LTR MaLR 1 1387 -193 5 1014 955 273 118 65 chr11 56325773 56326129 -65517727 + MTE2a LTR MaLR 1 375 -4 5 1014 270 336 73 0 chr11 56326107 56326217 -65517639 + RMER12 LTR ERVK 719 836 -486 5 1014 1086 110 0 0 chr11 56326266 56326412 -65517444 + B1_Mus1 SINE Alu 3 148 0 5 1014 1015 304 18 18 chr11 56327400 56327675 -65516181 - B4 SINE B4 -3 289 15 5 1014 523 266 126 53 chr11 56328469 56328786 -65515070 + MTC LTR MaLR 1 346 -54 5 1014 389 15 28 56 chr11 56328788 56328860 -65514996 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1014 1002 311 68 3 chr11 56330191 56330501 -65513355 + MTE2b LTR MaLR 1 330 -49 5 1014 325 315 128 40 chr11 56330519 56330668 -65513188 - B3A SINE B2 -18 180 19 5 1014 268 264 67 33 chr11 56330651 56330741 -65513115 + MTE2b LTR MaLR 284 376 -3 5 1014 211 189 0 0 chr11 56331638 56331675 -65512181 + G-rich Low_complexity Low_complexity 4 40 0 5 1014 944 241 25 20 chr11 56332145 56332348 -65511508 + B3 SINE B2 1 204 -12 5 1014 345 68 0 0 chr11 56333079 56333123 -65510733 - HAL1-3A_ME LINE L1 -846 2012 1969 5 1014 297 0 0 0 chr11 56333247 56333280 -65510576 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 1014 233 311 8 78 chr11 56333329 56333458 -65510398 + MIRb SINE MIR 126 245 -23 5 1014 225 269 59 15 chr11 56334051 56334119 -65509737 - MLT1-int LTR MaLR -312 1059 989 5 1014 747 232 65 16 chr11 56334351 56334535 -65509321 + MTE2a LTR MaLR 174 366 -13 5 1014 606 139 317 9 chr11 56335009 56335226 -65508630 - Lx LINE L1 -211 6443 6326 5 1014 247 311 40 0 chr11 56335793 56335867 -65507989 - RSINE1 SINE B4 -12 153 77 5 1014 279 333 120 8 chr11 56336227 56336360 -65507496 - MIRb SINE MIR -48 220 73 5 1014 1764 216 0 24 chr11 56336631 56336967 -65506889 - ORR1D1 LTR MaLR -44 330 3 5 1014 467 346 8 0 chr11 56337348 56337481 -65506375 + RSINE1 SINE B4 12 145 -20 5 1014 387 119 0 0 chr11 56337482 56337549 -65506307 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1014 24 32 0 0 chr11 56337553 56337584 -65506272 + AT_rich Low_complexity Low_complexity 1 31 0 5 1014 512 302 45 39 chr11 56338340 56338495 -65505361 + RSINE1 SINE B4 6 161 -4 5 1014 240 35 0 0 chr11 56338514 56338543 -65505313 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1014 2311 220 53 4 chr11 56338669 56339140 -65504716 + RMER17B LTR ERVK 459 952 -6 5 1014 854 144 44 16 chr11 56339146 56339323 -65504533 + Lx2B LINE L1 6798 6980 -20 5 1014 441 0 0 0 chr11 56339323 56339372 -65504484 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 1014 246 232 36 12 chr11 56340043 56340126 -65503730 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 5 1014 405 0 0 0 chr11 56340208 56340253 -65503603 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1014 422 340 119 8 chr11 56340344 56340596 -65503260 - B4A SINE B4 -8 284 5 5 1014 332 333 103 0 chr11 56341352 56341478 -65502378 - MER58A DNA MER1_type -84 140 2 5 1014 288 0 0 0 chr11 56342017 56342049 -65501807 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1014 370 162 0 105 chr11 56342822 56342856 -65501000 + URR1B DNA MER1_type 156 189 -36 5 1014 1198 123 43 0 chr11 56342856 56343043 -65500813 + B2_Mm2 SINE B2 1 195 0 5 1014 370 162 0 105 chr11 56343043 56343084 -65500772 + URR1B DNA MER1_type 190 223 -2 5 1014 255 152 0 0 chr11 56343212 56343258 -65500598 + T-rich Low_complexity Low_complexity 1 46 0 5 1014 1222 54 0 0 chr11 56343258 56343405 -65500451 - B1_Mus1 SINE Alu 0 148 2 5 1014 4903 45 2 3 chr11 56343417 56344022 -65499834 + L1Md_F2 LINE L1 5977 6580 -2 5 1014 253 230 194 0 chr11 56344209 56344348 -65499508 - L1M5 LINE L1 -258 5866 5701 5 1014 267 300 70 76 chr11 56344844 56344913 -65498943 + L1MA8 LINE L1 5083 5143 -1000 5 1014 309 26 0 0 chr11 56344913 56344951 -65498905 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1014 441 0 0 0 chr11 56344951 56344999 -65498857 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1014 267 300 70 76 chr11 56344999 56345242 -65498614 + L1MA8 LINE L1 5144 5393 -750 5 1014 676 304 53 0 chr11 56345463 56345782 -65498074 + L1MA8 LINE L1 5640 5975 -316 5 1014 1279 269 80 14 chr11 56345782 56346133 -65497723 - MTEa LTR MaLR 0 379 6 5 1014 468 235 152 21 chr11 56346155 56346398 -65497458 + L1MA8 LINE L1 5991 6265 -26 5 1014 7073 165 38 55 chr11 56346425 56346440 -65497416 - Lx4B LINE L1 0 7058 7045 5 1014 237 65 0 0 chr11 56346440 56346471 -65497385 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 5 1014 7073 165 38 55 chr11 56346471 56347759 -65496097 - Lx4B LINE L1 -14 7044 5746 5 1014 699 251 16 39 chr11 56347759 56347941 -65495915 - B3A SINE B2 -18 180 3 5 1014 7073 161 2 168 chr11 56347941 56348174 -65495682 - Lx4B LINE L1 -1313 5745 5541 5 1014 574 320 92 0 chr11 56348574 56348802 -65495054 + Lx8 LINE L1 7079 7327 -146 5 1014 32 0 0 0 chr11 56348836 56348868 -65494988 + AT_rich Low_complexity Low_complexity 1 32 0 5 1014 693 251 16 39 chr11 56349677 56349859 -65493997 - B3A SINE B2 -18 180 3 5 1014 393 299 202 28 chr11 56350134 56350347 -65493509 - MLT1D LTR MaLR -2 503 254 5 1014 225 154 0 0 chr11 56350381 56350420 -65493436 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 5 1014 668 332 19 32 chr11 56350459 56350770 -65493086 - MLT2C1 LTR ERVL -43 354 48 5 1014 191 330 136 25 chr11 56351067 56351185 -65492671 + MIR SINE MIR 32 162 -100 5 1014 323 293 133 21 chr11 56351977 56352120 -65491736 - HAL1-3A_ME LINE L1 -416 2442 2284 5 1014 345 304 44 18 chr11 56352860 56352974 -65490882 - PB1D10 SINE Alu 0 117 1 5 1014 281 365 52 9 chr11 56352997 56353113 -65490743 - MIR SINE MIR -64 198 78 5 1014 663 296 37 55 chr11 56353158 56353376 -65490480 + B3 SINE B2 3 216 0 5 1014 1571 257 40 18 chr11 56354063 56354263 -65489593 + MTD LTR MaLR 1 200 -219 5 1014 228 35 0 0 chr11 56354263 56354292 -65489564 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 1014 1571 257 40 18 chr11 56354292 56354487 -65489369 + MTD LTR MaLR 201 404 -15 5 1014 830 170 7 33 chr11 56354628 56354780 -65489076 - B1_Mus1 SINE Alu 0 148 1 5 1014 312 277 0 35 chr11 56354849 56354935 -65488921 - B1F1 SINE Alu 0 149 67 5 1014 263 200 0 0 chr11 56355130 56355190 -65488666 - HAL1 LINE L1 -887 1620 1561 5 1014 5497 97 92 0 chr11 56355251 56356048 -65487808 - L1_Mus3 LINE L1 -8 6630 5761 5 1014 478 307 43 24 chr11 56356517 56356724 -65487132 + MIRb SINE MIR 30 240 -28 5 1014 21 0 0 0 chr11 56356738 56356759 -65487097 + AT_rich Low_complexity Low_complexity 1 21 0 5 1014 364 307 43 61 chr11 56357463 56357626 -65486230 + MTD LTR MaLR 1 160 -259 5 1014 403 95 0 0 chr11 56357638 56357701 -65486155 - Lx LINE L1 -189 6465 6410 5 1014 518 310 693 47 chr11 56357701 56357719 -65486137 + MTD LTR MaLR 156 185 -234 5 1014 581 58 0 64 chr11 56357719 56357829 -65486027 + Lx LINE L1 6552 6654 0 5 1014 518 272 181 10 chr11 56357829 56358027 -65485829 + MTD LTR MaLR 186 418 -1 5 1014 180 250 0 0 chr11 56358978 56359042 -65484814 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1014 448 353 91 29 chr11 56359310 56359584 -65484272 + B4 SINE B4 2 292 0 5 1014 301 250 0 0 chr11 56360372 56360452 -65483404 + L1MB8 LINE L1 6087 6166 -12 5 1014 654 314 6 6 chr11 56360708 56360884 -65482972 + B4A SINE B4 109 284 -8 5 126 489 62 0 0 chr11 56360910 56360975 -65482881 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1015 1078 165 97 0 chr11 56361472 56361678 -65482178 + URR1A DNA MER1_type 1 226 0 5 1015 449 296 111 7 chr11 56361772 56361925 -65481931 - MTEb LTR MaLR 0 379 211 5 1015 598 62 21 0 chr11 56361925 56362021 -65481835 + (CA)n Simple_repeat Simple_repeat 1 98 0 5 1015 450 0 0 0 chr11 56362021 56362070 -65481786 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1015 419 283 103 48 chr11 56362081 56362226 -65481630 - MTEb LTR MaLR -208 171 19 5 1015 242 194 25 89 chr11 56362516 56362595 -65481261 + LTR82B Low_complexity ERVL 1 74 -756 5 1015 684 253 69 6 chr11 56363198 56363357 -65480499 + ID_B1 SINE B4 50 218 -6 5 1015 420 320 58 32 chr11 56363438 56363593 -65480263 + RSINE1 SINE B4 1 159 -6 5 1015 1389 197 21 0 chr11 56364370 56364659 -65479197 - Lx9 LINE L1 -227 7417 7123 5 1015 616 324 0 62 chr11 56364773 56364967 -65478889 - B4A SINE B4 -27 265 84 6 1015 192 77 0 0 chr11 56364986 56365012 -65478844 + (TCC)n Simple_repeat Simple_repeat 2 27 0 6 1015 731 201 6 0 chr11 56365028 56365207 -65478649 + CT-rich Low_complexity Low_complexity 1 180 0 6 1015 282 116 0 0 chr11 56365229 56365272 -65478584 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 6 1015 439 224 0 66 chr11 56365279 56365370 -65478486 - B4A SINE B4 -207 85 1 6 1015 556 309 124 41 chr11 56365582 56365849 -65478007 - MLT1F LTR MaLR -131 417 129 6 1015 658 260 81 70 chr11 56366183 56366456 -65477400 + B4A SINE B4 3 278 -14 6 1015 226 228 18 0 chr11 56366470 56366527 -65477329 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1015 635 324 23 47 chr11 56367312 56367526 -65476330 - B4 SINE B4 -2 290 82 6 1015 413 270 179 5 chr11 56367589 56367801 -65476055 - Lx8 LINE L1 -4 7469 7221 6 1015 746 244 40 35 chr11 56367842 56368042 -65475814 - Lx8 LINE L1 -690 6783 6583 6 1015 488 258 168 22 chr11 56368091 56368317 -65475539 - Lx8 LINE L1 -93 7380 7122 6 1015 434 284 15 0 chr11 56368331 56368465 -65475391 - Lx8 LINE L1 -451 7022 6887 6 1015 385 316 1 0 chr11 56368465 56368561 -65475295 - B4 SINE B4 -194 98 2 6 1015 271 303 137 86 chr11 56369340 56369400 -65474456 + MTEa LTR MaLR 1 65 -314 6 1015 468 77 0 0 chr11 56369400 56369465 -65474391 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1015 287 272 152 86 chr11 56369465 56369660 -65474196 + MTEa LTR MaLR 66 269 -110 6 1015 393 279 7 99 chr11 56371445 56371596 -65472260 + MTD LTR MaLR 51 187 -232 6 1015 496 228 70 9 chr11 56371590 56371705 -65472151 + MTD LTR MaLR 298 419 0 6 1015 224 30 30 0 chr11 56371941 56371974 -65471882 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1015 1191 35 7 0 chr11 56371978 56372120 -65471736 - B1_Mm SINE Alu -3 144 2 6 1015 333 310 55 55 chr11 56372137 56372318 -65471538 + MIRb SINE MIR 74 254 -14 6 1015 182 333 124 8 chr11 56372871 56372992 -65470864 + MIRb SINE MIR 66 200 -68 6 1015 619 275 41 41 chr11 56373437 56373453 -65470403 - B3A SINE B2 0 198 187 6 1015 180 0 0 0 chr11 56373453 56373473 -65470383 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1015 619 275 41 41 chr11 56373473 56373653 -65470203 - B3A SINE B2 -12 186 2 6 1015 720 302 24 0 chr11 56374077 56374246 -65469610 + B3A SINE B2 1 173 -25 6 1015 210 91 0 0 chr11 56374246 56374279 -65469577 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 6 1015 477 272 56 66 chr11 56374279 56374306 -65469550 + B2_Mm2 SINE B2 166 194 -1 6 1015 475 298 8 24 chr11 56374323 56374447 -65469409 + ID_B1 SINE B4 87 208 -16 6 1015 225 220 119 0 chr11 56374540 56374599 -65469257 - B4A SINE B4 -223 69 4 6 1015 281 287 103 36 chr11 56374602 56374797 -65469059 - Helitron1Nb_Mam RC Helitron -604 512 305 6 1015 414 312 18 42 chr11 56375694 56375861 -65467995 + RSINE1 SINE B4 2 164 -1 6 1015 1310 297 19 6 chr11 56375994 56376313 -65467543 - MTEa LTR MaLR -54 325 3 6 1015 1112 252 108 23 chr11 56376781 56377171 -65466685 - Lx8 LINE L1 0 7473 7051 6 1015 254 301 0 110 chr11 56377259 56377341 -65466515 + MER5A DNA MER1_type 20 92 -97 6 1015 445 311 90 21 chr11 56377599 56377846 -65466010 - MER2 DNA MER2_type -52 293 20 6 1015 5288 45 1 1 chr11 56378105 56378751 -65465105 - L1Md_F2 LINE L1 -2 6580 5935 6 1015 335 305 95 37 chr11 56379940 56380137 -65463719 + L1M2 LINE L1 1910 2121 -4728 6 1015 1108 132 33 0 chr11 56380137 56380319 -65463537 + B2_Mm2 SINE B2 1 188 -7 6 1015 335 305 95 37 chr11 56380319 56380771 -65463085 + L1M2 LINE L1 2122 2597 -4252 6 1015 941 105 7 0 chr11 56381506 56381659 -65462197 + (TC)n Simple_repeat Simple_repeat 1 154 0 6 1015 24 32 0 0 chr11 56381660 56381691 -65462165 + AT_rich Low_complexity Low_complexity 1 31 0 6 1015 654 279 19 38 chr11 56382795 56382955 -65460901 + B3A SINE B2 4 160 -38 6 1015 324 0 0 0 chr11 56382960 56382996 -65460860 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1015 756 259 80 0 chr11 56383024 56383186 -65460670 - B3A SINE B2 -22 176 2 6 1015 432 0 0 0 chr11 56383191 56383239 -65460617 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1015 282 160 0 0 chr11 56383243 56383293 -65460563 + GA-rich Low_complexity Low_complexity 1 50 0 6 1015 665 266 39 22 chr11 56383296 56383477 -65460379 - ORR1E LTR MaLR -168 191 8 6 1015 493 391 5 34 chr11 56384440 56384614 -65459242 + B3A SINE B2 1 174 -24 6 1015 402 39 0 0 chr11 56384614 56384666 -65459190 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1015 493 391 5 34 chr11 56384666 56384695 -65459161 + B3A SINE B2 175 198 0 6 1015 528 16 0 0 chr11 56384728 56384789 -65459067 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1015 22 0 0 0 chr11 56384789 56384811 -65459045 + AT_rich Low_complexity Low_complexity 1 22 0 6 1015 261 0 0 0 chr11 56385477 56385506 -65458350 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1015 326 179 44 15 chr11 56385629 56385697 -65458159 - HAL1-3A_ME LINE L1 -815 2043 1974 6 1015 560 186 6 0 chr11 56385697 56385869 -65457987 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 1015 564 189 0 0 chr11 56385888 56386036 -65457820 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 1015 488 243 95 63 chr11 56386047 56386073 -65457783 - RSINE1 SINE B4 0 165 141 6 1015 303 122 0 0 chr11 56386073 56386122 -65457734 + (CGTG)n Simple_repeat Simple_repeat 2 50 0 6 1015 488 243 95 63 chr11 56386122 56386253 -65457603 - RSINE1 SINE B4 -25 140 3 6 1015 422 263 8 0 chr11 56387022 56387155 -65456701 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 1015 1568 206 5 59 chr11 56387237 56387644 -65456212 + Lx9 LINE L1 6943 7459 -185 6 1015 441 0 0 0 chr11 56387645 56387694 -65456162 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1015 59 27 0 0 chr11 56387767 56387840 -65456016 + AT_rich Low_complexity Low_complexity 1 73 0 6 1015 369 0 0 0 chr11 56388018 56388059 -65455797 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1015 300 385 34 30 chr11 56388417 56388714 -65455142 + L1M3de LINE L1 972 1269 -5384 6 1015 342 356 48 5 chr11 56388944 56389153 -65454703 + L1M3de LINE L1 1476 1693 -4960 6 1015 556 204 0 10 chr11 56389237 56389341 -65454515 - Lx8 LINE L1 -1036 6437 6335 6 1015 186 103 0 0 chr11 56389353 56389382 -65454474 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1015 1662 269 119 31 chr11 56389576 56390409 -65453447 + L1M3 LINE L1 3686 4591 -1549 6 1015 377 323 7 11 chr11 56390437 56390712 -65453144 + GA-rich Low_complexity Low_complexity 1 274 0 6 1015 198 0 0 0 chr11 56390811 56390833 -65453023 + (CATA)n Simple_repeat Simple_repeat 3 24 0 6 1015 3426 25 2 10 chr11 56390857 56391256 -65452600 + MTA_Mm LTR MaLR 1 396 0 6 1015 341 313 25 42 chr11 56391265 56391502 -65452354 + L1M3de LINE L1 1774 2006 -4657 6 1015 396 251 14 24 chr11 56392373 56392510 -65451346 + MLT1A0 LTR MaLR 236 371 -19 6 1015 837 307 45 0 chr11 56392632 56392896 -65450960 + MTEa LTR MaLR 4 279 -100 6 1015 846 190 134 16 chr11 56392898 56393085 -65450771 + B3 SINE B2 1 209 -7 6 1015 856 301 18 4 chr11 56393698 56393978 -65449878 + B4A SINE B4 9 292 0 6 1015 216 86 0 0 chr11 56394093 56394128 -65449728 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1015 3375 91 24 4 chr11 56395158 56395335 -65448521 - MT2C_Mm LTR ERVL 0 475 292 6 1015 252 0 0 0 chr11 56395335 56395363 -65448493 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1015 3375 91 24 4 chr11 56395363 56395651 -65448205 - MT2C_Mm LTR ERVL -184 291 2 6 1015 480 241 19 2 chr11 56395739 56395881 -65447975 + L1MA4 LINE L1 5717 5931 -369 6 1015 443 196 42 61 chr11 56395946 56396158 -65447698 + RMER17C LTR ERVK 68 275 -135 6 1015 400 296 74 40 chr11 56398080 56398256 -65445600 - Lx8 LINE L1 -986 6487 6306 6 1015 855 205 0 0 chr11 56398364 56398520 -65445336 + B3 SINE B2 1 156 -60 6 1015 537 16 0 0 chr11 56398527 56398589 -65445267 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1015 264 239 64 64 chr11 56398634 56398759 -65445097 - YREP_Mm Unknown Unknown -1482 330 206 6 1015 438 297 47 0 chr11 56398662 56398790 -65445066 + ID_B1 SINE B4 91 224 0 6 1015 526 328 102 39 chr11 56398817 56399071 -65444785 + B4A SINE B4 1 270 -22 6 1015 633 38 0 0 chr11 56399100 56399180 -65444676 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1015 333 0 0 0 chr11 56399180 56399216 -65444640 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1015 208 170 19 19 chr11 56399288 56399342 -65444514 + GA-rich Low_complexity Low_complexity 2 55 0 6 1015 395 296 0 84 chr11 56400326 56400481 -65443375 + ID_B1 SINE B4 81 222 -2 6 1015 340 252 103 34 chr11 56400696 56400841 -65443015 + B4A SINE B4 118 273 -19 6 1015 408 20 0 0 chr11 56400902 56400951 -65442905 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1015 37748 30 1 7 chr11 56401027 56406204 -65437652 + L1Md_T LINE L1 452 5586 -297 6 1015 8563 34 0 1 chr11 56406204 56407201 -65436655 + L1Md_T LINE L1 5587 6582 0 6 1015 243 0 0 0 chr11 56407239 56407266 -65436590 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1015 387 0 0 0 chr11 56407318 56407361 -65436495 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1015 283 221 187 22 chr11 56407396 56407530 -65436326 + Lx9 LINE L1 7489 7644 0 6 1015 495 378 5 72 chr11 56407649 56407843 -65436013 + B3A SINE B2 2 182 -16 6 1015 205 161 0 0 chr11 56407843 56407874 -65435982 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1015 286 302 132 36 chr11 56408060 56408280 -65435576 - B4 SINE B4 -22 270 30 6 1015 4320 45 4 2 chr11 56409252 56409763 -65434093 - RLTR1B LTR ERV1 0 512 1 6 1015 396 0 0 0 chr11 56409914 56409958 -65433898 + (TAA)n Simple_repeat Simple_repeat 3 46 0 6 1015 850 233 46 32 chr11 56410264 56410481 -65433375 + B4A SINE B4 1 220 -72 6 1015 259 266 212 38 chr11 56410647 56410967 -65432889 - L1MB3 LINE L1 -5 6178 5803 6 1015 2065 102 7 10 chr11 56411121 56411428 -65432428 + L1_Mus3 LINE L1 6330 6635 -3 6 1015 659 240 37 32 chr11 56411517 56411706 -65432150 - B3A SINE B2 -8 190 1 6 1015 548 202 27 1 chr11 56411876 56411988 -65431868 - B1_Mur2 SINE Alu -7 142 35 6 1015 319 269 33 33 chr11 56412002 56412152 -65431704 - L1MB3 LINE L1 -583 5597 5448 6 1015 392 275 18 9 chr11 56412725 56412835 -65431021 - PB1D10 SINE Alu 0 117 7 6 1015 743 319 49 11 chr11 56412916 56413201 -65430655 - ORR1E LTR MaLR -63 296 1 6 1015 378 291 46 10 chr11 56413786 56413984 -65429872 + L1MA4 LINE L1 5700 5902 -1571 7 1015 184 313 15 0 chr11 56414187 56414254 -65429602 - MIR SINE MIR -82 180 113 7 1015 420 301 6 38 chr11 56415715 56415890 -65427966 + (CATA)n Simple_repeat Simple_repeat 3 172 0 7 1015 330 115 0 0 chr11 56415890 56415942 -65427914 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1015 420 301 6 38 chr11 56415942 56415949 -65427907 + (CATA)n Simple_repeat Simple_repeat 1 7 0 7 1015 292 225 39 56 chr11 56416470 56416649 -65427207 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 7 1015 217 244 33 50 chr11 56416596 56416777 -65427079 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 7 1015 331 73 55 0 chr11 56416783 56416838 -65427018 + B1_Mus2 SINE Alu 90 147 0 7 1015 540 200 38 8 chr11 56417852 56417983 -65425873 - RMER5 LTR ERV1 -7 527 393 7 1015 222 0 79 0 chr11 56418024 56418062 -65425794 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 7 1015 663 268 63 47 chr11 56418070 56418387 -65425469 - RMER5 LTR ERV1 -156 378 57 7 1015 585 0 0 0 chr11 56418419 56418484 -65425372 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1015 682 117 0 0 chr11 56419327 56419438 -65424418 + B2_Mm2 SINE B2 1 111 -105 7 1015 891 132 0 0 chr11 56420016 56420190 -65423666 + (TC)n Simple_repeat Simple_repeat 1 174 0 7 1015 420 55 0 0 chr11 56420190 56420244 -65423612 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1015 183 308 0 0 chr11 56420966 56421031 -65422825 - MER5A DNA MER1_type 0 189 125 7 1015 912 216 116 0 chr11 56421132 56421331 -65422525 + Lx8 LINE L1 6764 6985 -488 7 1015 357 224 12 12 chr11 56421606 56421692 -65422164 - MTD LTR MaLR -318 101 16 7 1015 1191 48 12 18 chr11 56421903 56422071 -65421785 - L1Md_F3 LINE L1 -3 6581 6415 7 1015 3882 86 16 25 chr11 56422191 56422752 -65421104 - Lx3_Mus LINE L1 -8 7001 6446 7 1015 390 16 31 31 chr11 56422760 56422824 -65421032 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 7 1015 285 51 0 0 chr11 56422941 56422980 -65420876 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1015 414 0 0 0 chr11 56422982 56423028 -65420828 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1015 200 231 39 0 chr11 56423601 56423653 -65420203 + G-rich Low_complexity Low_complexity 1 54 0 7 1015 204 67 0 0 chr11 56424041 56424071 -65419785 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1015 386 223 11 11 chr11 56424418 56424513 -65419343 - MTE2a LTR MaLR -1 378 284 7 1015 1568 232 133 25 chr11 56424513 56424586 -65419270 + Lx8 LINE L1 6878 6948 -525 7 1015 333 0 0 0 chr11 56424586 56424623 -65419233 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1015 1568 232 133 25 chr11 56424623 56425062 -65418794 + Lx8 LINE L1 6949 7445 -28 7 1015 536 300 36 102 chr11 56425094 56425398 -65418458 - MTE2a LTR MaLR -95 284 1 7 1015 342 257 69 10 chr11 56426094 56426196 -65417660 + PB1D10 SINE Alu 3 110 -7 7 1015 245 318 83 18 chr11 56426223 56426332 -65417524 - Lx8 LINE L1 -69 7404 7289 7 1015 210 143 0 0 chr11 56426370 56426405 -65417451 + (CAT)n Simple_repeat Simple_repeat 1 35 0 7 1015 286 246 31 0 chr11 56426422 56426487 -65417369 - Lx8 LINE L1 -236 7237 7171 7 1015 2049 164 40 23 chr11 56426489 56426888 -65416968 - MTC LTR MaLR 0 421 16 7 1015 778 259 35 5 chr11 56426970 56427172 -65416684 + B3 SINE B2 5 212 -4 7 1015 247 242 16 16 chr11 56427213 56427276 -65416580 - MIRm SINE MIR -1 275 213 7 1015 423 293 77 73 chr11 56427304 56427591 -65416265 + B4 SINE B4 3 290 -2 7 1015 339 329 94 6 chr11 56428570 56428741 -65415115 + B3A SINE B2 2 187 -11 7 1015 180 111 0 0 chr11 56429132 56429159 -65414697 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1015 2419 127 32 32 chr11 56429159 56429566 -65414290 - Lx LINE L1 0 6654 6248 7 1015 4510 106 3 0 chr11 56429566 56430191 -65413665 + Lx LINE L1 5604 6230 -424 7 1015 1858 184 48 11 chr11 56430427 56430779 -65413077 + ORR1B2 LTR MaLR 3 367 0 7 1015 742 298 77 23 chr11 56431032 56431293 -65412563 - Lx8 LINE L1 -692 6781 6507 7 1015 1038 248 119 24 chr11 56431438 56431773 -65412083 - MTEa LTR MaLR -12 367 1 7 1015 738 119 0 22 chr11 56433082 56433219 -65410637 + (TCCC)n Simple_repeat Simple_repeat 4 137 0 7 1015 357 186 0 0 chr11 56433268 56433338 -65410518 + CT-rich Low_complexity Low_complexity 4 73 0 7 1015 694 296 122 20 chr11 56433366 56433621 -65410235 - B4 SINE B4 -4 288 8 7 1015 213 39 0 0 chr11 56434485 56434511 -65409345 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1015 24 67 0 0 chr11 56434519 56434564 -65409292 + AT_rich Low_complexity Low_complexity 1 45 0 7 1015 1344 74 42 0 chr11 56434566 56434755 -65409101 - L1_Mus3 LINE L1 -6 6632 6436 7 1015 417 39 0 0 chr11 56434889 56434940 -65408916 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1015 947 109 0 7 chr11 56435205 56435353 -65408503 + (TCTA)n Simple_repeat Simple_repeat 2 148 0 7 1015 844 315 52 0 chr11 56435407 56435734 -65408122 + ORR1E LTR MaLR 1 344 -15 7 1015 4392 73 8 2 chr11 56437466 56438040 -65405816 + L1_Mus2 LINE L1 5981 6970 -38 7 1015 530 277 98 10 chr11 56438507 56438711 -65405145 - RMER15 LTR ERVL -18 557 336 7 1015 670 271 6 28 chr11 56439552 56439726 -65404130 + ID_B1 SINE B4 82 250 -42 7 1015 285 98 0 0 chr11 56440231 56440272 -65403584 + (CAGT)n Simple_repeat Simple_repeat 3 43 0 7 1015 315 0 0 0 chr11 56440274 56440309 -65403547 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1015 1803 202 42 3 chr11 56440309 56440689 -65403167 + MTD LTR MaLR 18 402 -17 7 1015 860 145 0 6 chr11 56440812 56440972 -65402884 + GA-rich Low_complexity Low_complexity 1 159 0 7 1015 210 224 0 0 chr11 56441031 56441080 -65402776 + CT-rich Low_complexity Low_complexity 2 50 0 7 1015 579 272 0 29 chr11 56441795 56441935 -65401921 - ID_B1 SINE B4 0 224 89 7 1015 501 295 44 24 chr11 56442124 56442374 -65401482 - MLT1C LTR MaLR 0 467 213 7 1015 207 125 0 0 chr11 56442472 56442512 -65401344 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1015 374 286 114 60 chr11 56442512 56442713 -65401143 - Lx4A LINE L1 0 7058 6847 7 1015 5062 177 33 6 chr11 56444234 56444579 -65399277 + L1_Mur2 LINE L1 1687 2054 -3823 7 1015 306 0 0 0 chr11 56444579 56444613 -65399243 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1015 5062 177 33 6 chr11 56444613 56445280 -65398576 + L1_Mur2 LINE L1 2055 2725 -3152 7 1015 936 94 0 0 chr11 56446423 56446582 -65397274 + (TC)n Simple_repeat Simple_repeat 1 159 0 7 1015 279 0 0 0 chr11 56446586 56446617 -65397239 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1015 553 317 158 17 chr11 56446617 56446663 -65397193 - B4 SINE B4 -23 269 224 7 1015 188 67 0 32 chr11 56446663 56446694 -65397162 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1015 553 317 158 17 chr11 56446694 56446881 -65396975 - B4 SINE B4 -69 223 5 7 1015 319 286 39 0 chr11 56447670 56447747 -65396109 - ID4_ SINE ID -2 81 2 7 1015 1841 216 25 6 chr11 56448283 56448642 -65395214 - ORR1D2 LTR MaLR -4 366 1 7 1015 435 237 26 26 chr11 56449334 56449451 -65394405 + RLTR23 LTR ERV1 314 430 0 7 1015 648 111 0 0 chr11 56450628 56450727 -65393129 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1015 1224 217 62 158 chr11 56450891 56451308 -65392548 - ORR1C2 LTR MaLR 0 384 8 7 1015 569 358 26 10 chr11 56451359 56451554 -65392302 + B3A SINE B2 1 198 0 7 1015 314 318 91 5 chr11 56451692 56451913 -65391943 + MER33 DNA MER1_type 3 242 -82 7 1015 240 235 0 0 chr11 56452201 56452269 -65391587 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1015 207 0 0 0 chr11 56452448 56452471 -65391385 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 7 1015 1119 280 90 55 chr11 56453607 56454064 -65389792 - Lx8 LINE L1 -2 7471 6999 7 1015 362 303 0 1 chr11 56454153 56454236 -65389620 - B4A SINE B4 -141 83 2 7 1015 305 323 30 38 chr11 56454239 56454371 -65389485 - MLT2F LTR ERVL -530 133 3 7 1015 21 0 0 0 chr11 56454463 56454484 -65389372 + AT_rich Low_complexity Low_complexity 1 21 0 7 1015 369 303 77 107 chr11 56454531 56454764 -65389092 - Lx8 LINE L1 -17 7456 7231 7 1015 551 292 23 46 chr11 56454919 56455138 -65388718 - MER20 DNA MER1_type -5 214 1 7 1015 225 0 0 0 chr11 56455250 56455275 -65388581 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1015 224 93 47 0 chr11 56455614 56455657 -65388199 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1015 478 281 57 68 chr11 56455756 56455932 -65387924 - B4A SINE B4 -59 233 60 7 1015 215 300 12 12 chr11 56456735 56456816 -65387040 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 7 1015 275 243 68 0 chr11 56456869 56456943 -65386913 + ID4 SINE ID 5 83 0 7 1015 619 288 68 139 chr11 56457213 56457508 -65386348 + B4A SINE B4 8 281 -11 7 1015 24 32 0 0 chr11 56458040 56458071 -65385785 + AT_rich Low_complexity Low_complexity 1 31 0 7 1015 4427 48 12 0 chr11 56458909 56459413 -65384443 - L1_Mus1 LINE L1 0 6567 6058 7 1015 793 57 19 0 chr11 56459415 56459521 -65384335 + L1_Mus1 LINE L1 5901 6008 -559 7 1015 1326 222 46 67 chr11 56459667 56459732 -65384124 - MTEb LTR MaLR -5 374 311 7 1015 1162 67 0 0 chr11 56459732 56459866 -65383990 + B1_Mus2 SINE Alu 2 135 -12 7 1015 723 24 0 0 chr11 56459867 56459952 -65383904 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 7 1015 1326 222 46 67 chr11 56459952 56460212 -65383644 - MTEb LTR MaLR -69 310 54 7 1015 2387 180 48 2 chr11 56460215 56460650 -65383206 + RMER6B LTR ERVK 1 455 -6 7 1015 281 213 74 74 chr11 56461592 56461673 -65382183 + B3A SINE B2 3 83 -115 7 1015 2065 132 30 42 chr11 56462200 56462533 -65381323 - ORR1A4 LTR MaLR 0 329 1 7 1015 6384 141 31 86 chr11 56462533 56463553 -65380303 - ORR1A4-int LTR MaLR 0 1963 1005 7 1015 5163 28 0 24 chr11 56463553 56464145 -65379711 - L1Md_F3 LINE L1 0 6584 6007 7 1015 6384 141 31 86 chr11 56464145 56464443 -65379413 - ORR1A4-int LTR MaLR -959 1004 718 7 1015 464 253 43 103 chr11 56464334 56464519 -65379337 - MT2B LTR ERVL -343 258 85 7 1015 4186 166 19 50 chr11 56464470 56465302 -65378554 - ORR1A4-int LTR MaLR -1157 806 1 7 1015 2024 112 10 159 chr11 56465302 56465685 -65378171 - ORR1A4 LTR MaLR 0 327 2 7 1015 767 276 36 118 chr11 56465685 56465879 -65377977 + MTEb LTR MaLR 63 231 -148 7 1015 798 233 26 16 chr11 56465879 56466071 -65377785 + B2_Mm2 SINE B2 2 195 0 7 1015 767 276 36 118 chr11 56466071 56466223 -65377633 + MTEb LTR MaLR 232 379 0 7 1015 25 31 0 0 chr11 56466232 56466264 -65377592 + AT_rich Low_complexity Low_complexity 1 32 0 7 1015 595 288 58 0 chr11 56466266 56466459 -65377397 - B3A SINE B2 -6 210 5 8 1015 21 36 0 0 chr11 56467132 56467160 -65376696 + AT_rich Low_complexity Low_complexity 1 28 0 8 1015 724 264 82 106 chr11 56468928 56469296 -65374560 + MTE2a LTR MaLR 16 374 -5 8 1015 234 0 0 0 chr11 56471188 56471214 -65372642 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 8 1015 237 308 43 78 chr11 56471819 56471960 -65371896 + LTR68 LTR ERV1 223 358 -382 8 1015 308 341 30 38 chr11 56472364 56472495 -65371361 + MER20 DNA MER1_type 88 217 -2 8 1015 189 74 0 0 chr11 56472560 56472587 -65371269 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1015 681 264 31 36 chr11 56473416 56473609 -65370247 + ID_B1 SINE B4 3 194 -30 8 1015 1730 133 4 0 chr11 56474285 56474540 -65369316 + RLTR12A LTR ERVK 1 256 -312 8 1015 649 232 120 10 chr11 56474627 56474819 -65369037 + L1_Mur3 LINE L1 4159 4371 -1509 8 1015 324 0 0 0 chr11 56475147 56475183 -65368673 + (CAG)n Simple_repeat Simple_repeat 1 36 0 8 1015 790 311 66 41 chr11 56476089 56476360 -65367496 + B4 SINE B4 15 292 0 8 1015 933 222 55 20 chr11 56476466 56476668 -65367188 + B3 SINE B2 1 209 -7 8 1015 1073 290 76 29 chr11 56477584 56477925 -65365931 - ORR1E LTR MaLR -2 357 1 8 1015 1040 287 72 20 chr11 56478578 56478782 -65365074 + MTE2b LTR MaLR 4 204 -175 8 1015 639 0 0 0 chr11 56478782 56478853 -65365003 + (TC)n Simple_repeat Simple_repeat 2 72 0 8 1015 1040 287 72 20 chr11 56478853 56478993 -65364863 + MTE2b LTR MaLR 205 366 -13 8 1015 1478 223 79 25 chr11 56479536 56479890 -65363966 + ORR1D1 LTR MaLR 1 373 -1 8 1015 1067 198 33 19 chr11 56480268 56480479 -65363377 + B3 SINE B2 3 216 0 8 1015 391 148 33 61 chr11 56480517 56480697 -65363159 + (TA)n Simple_repeat Simple_repeat 1 175 0 8 1015 6747 85 5 1 chr11 56481340 56482200 -65361656 - L1_Mus3 LINE L1 -5 6633 5771 8 1015 225 283 0 0 chr11 56482466 56482579 -65361277 + (CA)n Simple_repeat Simple_repeat 2 114 0 8 1015 333 0 0 0 chr11 56482811 56482848 -65361008 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1015 865 267 50 93 chr11 56483083 56483479 -65360377 + MTE2a LTR MaLR 1 379 0 8 1015 261 232 99 28 chr11 56483760 56483831 -65360025 - PB1D10 SINE Alu -20 97 22 8 1015 219 310 14 0 chr11 56484349 56484420 -65359436 + (CATA)n Simple_repeat Simple_repeat 3 74 0 8 1015 317 314 104 75 chr11 56484814 56484948 -65358908 - ORR1E LTR MaLR -221 138 1 8 1015 1138 118 0 0 chr11 56485071 56485215 -65358641 + B1_Mm SINE Alu 2 145 -2 8 1015 297 0 0 0 chr11 56485215 56485248 -65358608 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 8 1015 202 323 264 12 chr11 56486030 56486193 -65357663 + MIRb SINE MIR 44 247 -21 8 1015 943 323 37 23 chr11 56488752 56489104 -65354752 - MLT2D LTR ERVL -52 362 6 8 1015 206 380 0 0 chr11 56489188 56489259 -65354597 + L2a LINE L2 3336 3406 -20 8 1015 270 0 0 0 chr11 56489462 56489492 -65354364 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1015 487 322 242 9 chr11 56489493 56489712 -65354144 - B4A SINE B4 -3 289 20 8 1015 402 115 0 0 chr11 56489713 56489774 -65354082 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 8 1015 369 214 75 53 chr11 56489809 56489903 -65353953 - B1F SINE Alu -51 98 3 8 1015 452 323 18 18 chr11 56490863 56491027 -65352829 + RSINE1 SINE B4 2 165 0 8 1015 224 195 0 0 chr11 56491028 56491069 -65352787 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1016 22 56 0 0 chr11 56492350 56492386 -65351470 + AT_rich Low_complexity Low_complexity 1 36 0 8 1016 599 305 36 48 chr11 56492522 56492854 -65351002 + L1MA4 LINE L1 5603 5930 -373 8 1016 207 269 0 19 chr11 56493042 56493095 -65350761 + GA-rich Low_complexity Low_complexity 3 54 0 8 1016 210 375 88 0 chr11 56493588 56493668 -65350188 - B1F1 SINE Alu -62 87 1 8 1016 189 147 0 0 chr11 56494802 56494836 -65349020 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1016 253 267 0 0 chr11 56495090 56495150 -65348706 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1016 342 0 0 0 chr11 56495152 56495190 -65348666 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1016 657 0 0 0 chr11 56495190 56495263 -65348593 + (GAA)n Simple_repeat Simple_repeat 3 75 0 8 1016 408 40 0 0 chr11 56496065 56496115 -65347741 + (TTA)n Simple_repeat Simple_repeat 2 51 0 8 1016 212 256 11 75 chr11 56496117 56496136 -65347720 - RSINE1 SINE B4 -1 164 146 8 1016 429 20 0 0 chr11 56496136 56496186 -65347670 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1016 448 291 83 58 chr11 56496186 56496466 -65347390 - B4 SINE B4 -27 265 2 8 1016 219 290 159 0 chr11 56497063 56497132 -65346724 + B4A SINE B4 2 81 -211 8 1016 2315 70 20 0 chr11 56497146 56497448 -65346408 - Lx LINE L1 -658 5996 5689 8 1016 3891 115 76 37 chr11 56497448 56498069 -65345787 + Lx LINE L1 6008 6652 -2 8 1016 587 309 85 0 chr11 56498080 56498245 -65345611 + B4A SINE B4 95 273 -19 8 1016 360 0 0 0 chr11 56498290 56498330 -65345526 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1016 1262 250 41 20 chr11 56498664 56499007 -65344849 + Lx6 LINE L1 7111 7460 0 8 1016 586 280 181 4 chr11 56499017 56499282 -65344574 - L1MA9 LINE L1 -40 6272 5961 8 1016 487 186 71 63 chr11 56499303 56499429 -65344427 - ID_B1 SINE B4 -3 221 95 8 1016 250 265 9 140 chr11 56499330 56499444 -65344412 - PB1 SINE Alu -27 100 2 8 1016 191 324 44 0 chr11 56499579 56499647 -65344209 - MIR3 SINE MIR -53 155 85 8 1016 333 305 31 38 chr11 56500556 56500716 -65343140 + MER5A1 DNA MER1_type 4 162 -4 1 1016 419 239 21 42 chr11 56501145 56501241 -65342615 + RSINE1 SINE B4 71 164 -1 2 1016 381 273 11 0 chr11 56501303 56501391 -65342465 + PB1D10 SINE Alu 28 116 -1 3 1016 256 290 58 29 chr11 56503326 56503429 -65340427 - B4 SINE B4 -186 106 1 4 1016 405 86 0 0 chr11 56503654 56503712 -65340144 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1016 521 316 149 21 chr11 56503773 56504015 -65339841 + RMER15 LTR ERVL 300 572 -3 6 1016 189 271 112 45 chr11 56504023 56504112 -65339744 + MIRb SINE MIR 144 238 -30 7 1016 388 255 0 18 chr11 56504595 56504763 -65339093 + (TATG)n Simple_repeat Simple_repeat 4 168 0 8 1016 273 264 0 0 chr11 56504779 56504889 -65338967 + (TATG)n Simple_repeat Simple_repeat 2 111 0 8 1016 425 90 15 0 chr11 56505371 56505438 -65338418 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 9 1016 2636 177 46 22 chr11 56505648 56506171 -65337685 - RMER19B LTR ERVK 0 902 158 1 1016 231 376 29 57 chr11 56506321 56506496 -65337360 - MER5A DNA MER1_type -4 185 16 1 1016 582 347 28 71 chr11 56506552 56506878 -65336978 - MLT1B LTR MaLR -2 388 77 1 1016 1188 268 49 59 chr11 56507448 56507857 -65335999 + MTD LTR MaLR 1 405 -14 1 1016 650 370 4 18 chr11 56508681 56508909 -65334947 + B4A SINE B4 1 225 -67 1 1016 4383 63 0 0 chr11 56508972 56509493 -65334363 - L1Md_F2 LINE L1 -2 6580 6060 1 1016 2128 141 87 66 chr11 56510185 56510267 -65333589 - L1_Mus1 LINE L1 0 6638 6540 1 1016 333 0 0 0 chr11 56510267 56510304 -65333552 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1016 4799 27 0 6 chr11 56510309 56510836 -65333020 - L1Md_F3 LINE L1 -15 6569 6046 1 1016 2305 87 0 3 chr11 56510836 56511137 -65332719 - L1_Mus2 LINE L1 -32 6534 6235 1 1016 674 291 113 110 chr11 56511713 56512041 -65331815 + MTC LTR MaLR 6 334 -45 2 1016 845 288 82 60 chr11 56512055 56512373 -65331483 + MTD LTR MaLR 81 405 -14 2 1016 464 277 93 113 chr11 56512400 56512852 -65331004 + L1MEc LINE L1 1136 1578 -4822 2 1016 1207 237 183 3 chr11 56512852 56513207 -65330649 + MTD LTR MaLR 1 419 0 2 1016 257 231 45 45 chr11 56513264 56513418 -65330438 + L1MEc LINE L1 1765 1918 -4482 2 1016 4403 101 151 13 chr11 56513615 56514390 -65329466 + RMER17D LTR ERVK 1 882 -7 2 1016 417 268 148 28 chr11 56514423 56514707 -65329149 - L1MA8 LINE L1 -88 6203 5886 2 1016 264 299 14 7 chr11 56515249 56515387 -65328469 + L1M2 LINE L1 1456 1594 -4254 2 1016 2067 306 80 12 chr11 56515421 56516185 -65327671 + Lx8 LINE L1 6536 7351 -122 2 1016 3220 172 40 0 chr11 56516607 56517189 -65326667 - Lx5 LINE L1 -859 6191 5587 2 1016 4254 190 64 19 chr11 56517200 56517998 -65325858 + Lx5 LINE L1 6203 7036 -14 2 1016 246 32 0 0 chr11 56517998 56518029 -65325827 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 2 1016 471 332 76 70 chr11 56518607 56518937 -65324919 - MLT2D LTR ERVL -55 359 28 3 1016 330 312 84 9 chr11 56519132 56519410 -65324446 + L1M2 LINE L1 2460 2608 -4241 2 1016 1417 253 137 57 chr11 56519557 56520044 -65323812 - RLTR40 LTR ERVK -61 756 211 3 1016 4129 48 0 2 chr11 56520044 56520520 -65323336 + L1Md_F3 LINE L1 6096 6570 -14 3 1016 1417 253 137 57 chr11 56520520 56520732 -65323124 - RLTR40 LTR ERVK -607 210 1 3 1016 200 170 36 36 chr11 56520913 56520968 -65322888 + A-rich Low_complexity Low_complexity 3 57 0 3 1016 736 262 111 39 chr11 56521107 56521341 -65322515 - MTE2b LTR MaLR -120 259 9 3 1016 519 307 114 38 chr11 56521350 56521504 -65322352 + L1M2 LINE L1 3031 3192 -3653 2 1016 1885 24 0 0 chr11 56521504 56521714 -65322142 + L1Md_A LINE L1 6372 6581 -1 3 1016 519 307 114 38 chr11 56521714 56522341 -65321515 + L1M2 LINE L1 3193 3870 -2975 2 1016 333 0 0 0 chr11 56522589 56522626 -65321230 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1016 323 288 48 8 chr11 56522648 56522774 -65321082 + L1M2 LINE L1 3872 4002 -2843 2 1016 452 100 12 0 chr11 56522939 56523019 -65320837 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 1016 411 320 8 8 chr11 56523022 56523151 -65320705 - B3A SINE B2 -66 132 4 3 1016 1266 270 71 39 chr11 56523489 56524105 -65319751 + L1M2 LINE L1 5461 6096 -749 2 1016 573 271 8 0 chr11 56524105 56524234 -65319622 + B3A SINE B2 1 130 -68 3 1016 261 196 0 0 chr11 56524331 56524387 -65319469 + L1M2 LINE L1 6092 6147 -846 2 1016 235 222 13 40 chr11 56524399 56524474 -65319382 - ORR1E LTR MaLR -20 359 287 4 1016 271 328 78 0 chr11 56524595 56524711 -65319145 - ORR1E LTR MaLR -224 135 11 4 1016 749 318 59 18 chr11 56524922 56525313 -65318543 - L1M3 LINE L1 -3214 2926 2520 4 1016 320 294 71 22 chr11 56525683 56525867 -65317989 + L1MEc LINE L1 2148 2340 -4060 4 1016 1745 218 37 3 chr11 56526161 56526516 -65317340 + ORR1D1 LTR MaLR 1 367 -7 4 1016 1491 313 16 62 chr11 56526533 56527143 -65316713 + Lx8 LINE L1 6348 6929 -544 4 1016 325 264 21 32 chr11 56527150 56527244 -65316612 - Lx8 LINE L1 -989 6484 6392 4 1016 539 335 117 52 chr11 56527284 56527744 -65316112 + Lx8 LINE L1 6983 7472 -1 4 1016 198 71 0 0 chr11 56527899 56527927 -65315929 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1016 499 267 192 0 chr11 56528058 56528219 -65315637 - ORR1E LTR MaLR -167 192 1 4 1016 328 229 42 14 chr11 56528271 56528342 -65315514 + ID4 SINE ID 9 81 -2 4 1016 633 253 161 12 chr11 56528291 56528459 -65315397 + ID_B1 SINE B4 32 224 0 4 1016 229 196 58 19 chr11 56528572 56528624 -65315232 + B2_Mm2 SINE B2 2 55 -140 5 1016 451 327 27 58 chr11 56528601 56528825 -65315031 + RMER15 LTR ERVL 340 556 -19 5 1016 26 30 0 0 chr11 56529267 56529300 -65314556 + AT_rich Low_complexity Low_complexity 1 33 0 5 1016 847 287 56 39 chr11 56530142 56530428 -65313428 + B4 SINE B4 2 292 0 5 1016 576 0 0 0 chr11 56530429 56530493 -65313363 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1016 527 311 142 15 chr11 56531289 56531633 -65312223 + MTA_Mm LTR MaLR 5 396 0 5 1016 251 363 53 63 chr11 56532021 56532227 -65311629 - MLT1K LTR MaLR -25 570 367 5 1016 1417 225 26 59 chr11 56532242 56532630 -65311226 + MTE2b LTR MaLR 1 375 -4 5 1016 260 349 100 36 chr11 56532659 56532879 -65310977 - MLT1K LTR MaLR -331 264 31 5 1016 530 271 40 79 chr11 56533080 56533232 -65310624 - B3A SINE B2 -51 147 2 5 1016 465 284 0 0 chr11 56533545 56533647 -65310209 + PB1D10 SINE Alu 5 106 -11 5 1016 608 293 58 37 chr11 56534334 56534525 -65309331 + B3A SINE B2 18 212 -4 6 1016 860 185 0 0 chr11 56535219 56535354 -65308502 - B3 SINE B2 -69 147 13 6 1016 306 341 49 49 chr11 56535412 56535597 -65308259 + ORR1E LTR MaLR 8 192 -167 6 1016 193 220 0 35 chr11 56535764 56535849 -65308007 + (CATA)n Simple_repeat Simple_repeat 4 85 0 6 1016 437 50 17 0 chr11 56535854 56535914 -65307942 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1016 352 289 80 15 chr11 56537095 56537232 -65306624 + B1F SINE Alu 2 147 -2 6 1016 231 328 0 0 chr11 56537242 56537309 -65306547 + ID4 SINE ID 4 70 -13 6 1016 3297 219 49 10 chr11 56538914 56539624 -65304232 - Lx6 LINE L1 -10 7450 6713 6 1016 622 277 27 0 chr11 56539739 56539887 -65303969 - B3A SINE B2 -42 156 5 6 1016 279 0 0 0 chr11 56539917 56539948 -65303908 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1016 648 132 0 0 chr11 56540113 56540219 -65303637 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 7 1016 1918 214 134 49 chr11 56540737 56541288 -65302568 - RMER19B LTR ERVK 0 902 305 7 1016 637 249 213 6 chr11 56542819 56542993 -65300863 - B3 SINE B2 -6 210 1 7 1016 196 367 62 25 chr11 56543411 56543492 -65300364 - L2b LINE L2 -46 3329 3246 7 1016 751 295 59 56 chr11 56543663 56543950 -65299906 - B4A SINE B4 -4 288 1 7 1016 610 308 0 0 chr11 56543960 56544103 -65299753 - B1F1 SINE Alu -4 145 3 7 1016 854 336 66 47 chr11 56544729 56545110 -65298746 + MLT1E1A LTR MaLR 287 674 -6 7 1016 212 143 0 23 chr11 56545312 56545355 -65298501 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1016 284 127 0 18 chr11 56545364 56545420 -65298436 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1016 6377 72 77 94 chr11 56545834 56546352 -65297504 + L1Md_Gf LINE L1 56 614 -5908 7 1016 230 316 59 59 chr11 56546352 56546453 -65297403 + RLTR45 LTR ERVK 4 104 -378 8 1016 6377 72 77 94 chr11 56546453 56546940 -65296916 + L1Md_Gf LINE L1 615 1142 -5380 7 1016 36557 39 0 0 chr11 56546906 56551290 -65292566 + L1Md_T LINE L1 1203 5586 -297 8 1016 8965 35 0 0 chr11 56551290 56552286 -65291570 + L1Md_T LINE L1 5587 6582 0 8 1016 183 42 0 0 chr11 56552549 56552573 -65291283 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 8 1016 836 238 25 20 chr11 56552613 56552810 -65291046 + B3A SINE B2 1 198 0 8 1016 432 302 29 0 chr11 56553791 56553963 -65289893 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 8 1016 597 107 28 14 chr11 56553984 56554126 -65289730 + (TCTA)n Simple_repeat Simple_repeat 3 146 0 8 1016 324 0 0 0 chr11 56554314 56554350 -65289506 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1016 274 267 56 72 chr11 56554519 56554644 -65289212 + LTR16A1 LTR ERVL 334 456 0 8 1016 903 19 0 0 chr11 56554682 56554787 -65289069 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 8 1016 510 17 0 0 chr11 56555188 56555247 -65288609 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1016 194 305 143 43 chr11 56555306 56555467 -65288389 - MIR SINE MIR 0 262 86 8 1016 703 240 62 57 chr11 56556664 56556858 -65286998 - B3A SINE B2 -1 197 3 9 1016 22 0 0 0 chr11 56556864 56556886 -65286970 + AT_rich Low_complexity Low_complexity 1 22 0 9 1016 351 324 103 59 chr11 56556891 56557144 -65286712 + B4A SINE B4 4 267 -25 9 1016 270 0 0 0 chr11 56557164 56557194 -65286662 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1016 1147 78 14 0 chr11 56557460 56557602 -65286254 + B1_Mus1 SINE Alu 5 148 0 9 1016 442 325 71 36 chr11 56557602 56557854 -65286002 + MER110A LTR ERV1 127 387 -81 9 1016 1058 205 18 18 chr11 56558018 56558242 -65285614 - URR1B DNA MER1_type 0 225 2 9 1016 212 260 20 0 chr11 56558253 56558303 -65285553 + MIR3 SINE MIR 142 192 -16 9 1016 454 324 5 11 chr11 56560090 56560274 -65283582 - L1MA5 LINE L1 -3 6297 6115 9 1016 267 296 11 0 chr11 56560345 56560433 -65283423 + L1MA5 LINE L1 5842 5930 -370 9 1016 346 328 42 25 chr11 56560437 56560556 -65283300 + RSINE1 SINE B4 23 143 -22 1 1016 246 312 91 35 chr11 56561262 56561405 -65282451 + MIR SINE MIR 107 257 -5 1 1016 637 204 12 0 chr11 56561862 56562029 -65281827 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1016 769 190 0 11 chr11 56562049 56562230 -65281626 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1016 577 224 0 22 chr11 56562237 56562415 -65281441 + (CATA)n Simple_repeat Simple_repeat 4 177 0 1 1016 392 195 9 17 chr11 56562415 56562507 -65281349 - MT2A LTR ERVL -437 96 6 1 1016 923 254 140 9 chr11 56562507 56562849 -65281007 + Lx9 LINE L1 7236 7622 -22 1 1016 24 32 0 0 chr11 56562877 56562908 -65280948 + AT_rich Low_complexity Low_complexity 1 31 0 1 1016 296 18 52 35 chr11 56563008 56563066 -65280790 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1016 444 37 0 0 chr11 56564984 56565038 -65278818 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1016 751 219 7 27 chr11 56565183 56565333 -65278523 + B1_Mur2 SINE Alu 3 149 0 1 1016 218 105 26 0 chr11 56565351 56565389 -65278467 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1016 1163 270 25 4 chr11 56566534 56566813 -65277043 + B4 SINE B4 1 285 -7 1 1016 519 17 0 0 chr11 56566861 56566921 -65276935 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1016 411 262 98 37 chr11 56567651 56567865 -65275991 - L1MC5 LINE L1 -48 7913 7687 1 1016 207 0 0 0 chr11 56568037 56568060 -65275796 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1 1016 294 29 0 0 chr11 56568060 56568095 -65275761 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1 1016 336 192 19 9 chr11 56568342 56568447 -65275409 + (CA)n Simple_repeat Simple_repeat 1 106 0 1 1016 812 181 7 7 chr11 56568936 56569081 -65274775 - B3A SINE B2 -53 145 1 1 1016 270 0 0 0 chr11 56569718 56569748 -65274108 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1016 234 0 0 0 chr11 56569748 56569773 -65274083 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1016 1171 209 52 49 chr11 56569774 56569883 -65273973 - Lx9 LINE L1 -22 7622 7519 1 1016 300 53 0 0 chr11 56569883 56569921 -65273935 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1016 1171 209 52 49 chr11 56569921 56570158 -65273698 - Lx9 LINE L1 -126 7518 7275 1 1016 763 292 14 23 chr11 56570167 56570384 -65273472 + B3 SINE B2 2 216 0 1 1016 21 0 0 0 chr11 56570636 56570657 -65273199 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 823 124 0 0 chr11 56570758 56570871 -65272985 - L1_Mus1 LINE L1 -386 6181 6069 1 1016 3311 59 3 0 chr11 56570871 56571262 -65272594 + L1_Mus1 LINE L1 6175 6566 -1 1 1016 314 235 56 48 chr11 56571334 56571459 -65272397 - PB1 SINE Alu 0 127 2 1 1016 431 290 53 8 chr11 56571934 56572066 -65271790 - B1F SINE Alu -2 147 10 1 1016 237 108 0 0 chr11 56572118 56572155 -65271701 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1016 243 0 0 0 chr11 56572157 56572184 -65271672 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1016 1081 283 21 61 chr11 56572534 56572935 -65270921 + MTE2b LTR MaLR 1 359 0 1 1016 1414 138 135 91 chr11 56573013 56573332 -65270524 + ORR1B1 LTR MaLR 1 333 -61 1 1016 867 259 41 25 chr11 56573335 56573652 -65270204 + RLTR15 LTR ERVK 6 327 -32 1 1016 281 185 0 18 chr11 56573678 56573733 -65270123 + ORR1B1 LTR MaLR 328 381 -13 1 1016 716 329 50 7 chr11 56574969 56575248 -65268608 + B4A SINE B4 2 292 0 1 1016 199 275 54 130 chr11 56575787 56575879 -65267977 - MIRb SINE MIR -159 109 25 1 1016 201 74 0 0 chr11 56576732 56576759 -65267097 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1016 208 53 53 0 chr11 56577433 56577471 -65266385 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 1 1016 630 164 142 45 chr11 56577494 56577628 -65266228 - B1_Mus1 SINE Alu -1 147 1 1 1016 998 252 124 19 chr11 56578239 56578562 -65265294 + ORR1E LTR MaLR 1 357 -2 1 1016 194 300 171 37 chr11 56578562 56578797 -65265059 - L2a LINE L2 -73 3353 3072 1 1016 561 289 18 25 chr11 56579140 56579303 -65264553 + B4A SINE B4 1 162 -130 1 1016 4841 154 11 7 chr11 56579413 56580147 -65263709 - RMER19A LTR ERVK 0 737 1 1 1016 980 227 99 115 chr11 56581578 56581951 -65261905 - MTE2a LTR MaLR -12 367 1 1 1016 188 61 61 0 chr11 56582174 56582207 -65261649 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 1 1016 1008 306 84 73 chr11 56582510 56583000 -65260856 - MER77 LTR ERVL -104 503 9 1 1016 22 0 0 0 chr11 56584075 56584097 -65259759 + AT_rich Low_complexity Low_complexity 1 22 0 1 1016 490 328 72 51 chr11 56584421 56584707 -65259149 + B4A SINE B4 17 281 -11 1 1016 669 13 0 0 chr11 56584707 56584785 -65259071 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1016 1173 102 0 0 chr11 56585063 56585210 -65258646 + B1_Mus1 SINE Alu 2 148 0 1 1016 335 241 55 6 chr11 56585210 56585373 -65258483 - RMER17D LTR ERVK -478 411 241 1 1016 296 233 169 32 chr11 56585378 56585502 -65258354 + MER5A DNA MER1_type 42 182 -7 1 1016 259 255 135 19 chr11 56585516 56585620 -65258236 - Charlie7 DNA MER1_type -1866 746 631 1 1016 293 293 14 89 chr11 56586913 56587059 -65256797 - RMER12 LTR ERVK -452 870 736 1 1016 257 128 21 0 chr11 56587078 56587125 -65256731 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1 1016 361 247 0 0 chr11 56587125 56587210 -65256646 - Lx9 LINE L1 -176 7468 7384 1 1016 223 238 0 0 chr11 56588514 56588556 -65255300 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1016 446 332 42 38 chr11 56589236 56589499 -65254357 - L1MA9 LINE L1 -1 7271 7008 1 1016 1221 276 127 38 chr11 56589555 56589696 -65254160 - L1MA9 LINE L1 -372 6900 6761 1 1016 465 19 0 0 chr11 56589696 56589750 -65254106 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1016 339 25 0 0 chr11 56589750 56589789 -65254067 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1016 1221 280 115 35 chr11 56589789 56590310 -65253546 - L1MA9 LINE L1 -512 6760 6173 1 1016 733 181 8 0 chr11 56590316 56590449 -65253407 - MTD LTR MaLR -18 401 268 1 1016 284 250 61 30 chr11 56590650 56590749 -65253107 - L1MA9 LINE L1 -1478 5622 5521 1 1016 576 248 25 0 chr11 56590832 56590953 -65252903 - B1F SINE Alu -6 143 20 1 1016 1031 276 126 45 chr11 56590972 56591609 -65252247 - L1MA9 LINE L1 -1637 5463 4776 1 1016 439 277 135 68 chr11 56592539 56592822 -65251034 - B4 SINE B4 -19 273 3 1 1016 239 346 0 0 chr11 56593273 56593380 -65250476 - L1MA9 LINE L1 -4926 2104 1998 1 1016 713 272 16 32 chr11 56594060 56594250 -65249606 - ID_B1 SINE B4 -31 193 7 1 1016 234 244 54 65 chr11 56595858 56595950 -65247906 + MLT1A1 LTR MaLR 315 405 -3 1 1016 233 301 11 46 chr11 56596155 56596242 -65247614 + MLT1A1 LTR MaLR 1 84 -324 1 1016 378 0 0 0 chr11 56596720 56596762 -65247094 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1016 32 26 0 0 chr11 56596813 56596852 -65247004 + AT_rich Low_complexity Low_complexity 1 39 0 1 1016 230 200 55 0 chr11 56597478 56597533 -65246323 + MLT1A0 LTR MaLR 306 363 -2 1 1016 709 263 130 10 chr11 56598836 56599036 -65244820 - ID_B1 SINE B4 0 224 1 1 1016 3089 294 82 26 chr11 56600553 56600592 -65243264 + Lx9 LINE L1 6320 6359 -1285 1 1016 2842 137 32 5 chr11 56600592 56601002 -65242854 - MTC LTR MaLR 0 421 1 1 1016 3089 294 82 26 chr11 56601002 56601394 -65242462 + Lx9 LINE L1 6360 6769 -875 1 1016 4543 174 91 63 chr11 56601394 56602271 -65241585 + RMER19B LTR ERVK 1 902 0 1 1016 3089 294 82 26 chr11 56602271 56603074 -65240782 + Lx9 LINE L1 6770 7625 -19 1 1016 282 273 38 62 chr11 56604050 56604210 -65239646 - MIR SINE MIR -4 258 103 1 1016 194 143 20 0 chr11 56604210 56604259 -65239597 + GA-rich Low_complexity Low_complexity 2 51 0 1 1016 2308 151 68 0 chr11 56605650 56606034 -65237822 - MTC LTR MaLR 0 421 12 1 1016 1542 266 95 28 chr11 56606187 56606805 -65237051 + L1ME3A LINE L1 5276 5954 -219 1 1016 441 54 0 0 chr11 56607081 56607137 -65236719 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1016 1313 239 4 162 chr11 56607310 56607784 -65236072 - Lx5 LINE L1 -395 6655 6257 1 1016 1463 187 79 29 chr11 56607789 56608169 -65235687 + Lx6 LINE L1 5719 6117 -1343 1 1016 21 0 0 0 chr11 56608220 56608241 -65235615 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 306 235 0 0 chr11 56608677 56608779 -65235077 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 1 1016 600 238 0 11 chr11 56608815 56609079 -65234777 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1 1016 373 222 76 11 chr11 56609080 56609173 -65234683 - B1F1 SINE Alu -27 93 1 1 1016 749 67 10 0 chr11 56610022 56610126 -65233730 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 1016 186 167 0 0 chr11 56610126 56610162 -65233694 + GA-rich Low_complexity Low_complexity 3 38 0 1 1016 448 232 170 0 chr11 56610172 56610284 -65233572 + B1_Mur2 SINE Alu 19 149 0 1 1016 352 226 29 36 chr11 56610287 56610425 -65233431 + L1MA4 LINE L1 5770 5906 -394 1 1016 607 308 23 31 chr11 56610829 56611140 -65232716 - L1MA4 LINE L1 -379 5921 5547 1 1016 287 49 0 24 chr11 56612314 56612356 -65231500 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1016 296 186 139 28 chr11 56612367 56612439 -65231417 - PB1D10 SINE Alu 0 117 38 1 1016 432 0 0 0 chr11 56612817 56612865 -65230991 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1016 1966 244 99 21 chr11 56613135 56613659 -65230197 - RMER15 LTR ERVL 0 575 11 1 1016 39966 60 1 23 chr11 56613951 56620865 -65222991 - L1Md_T LINE L1 0 6582 99 1 1016 618 39 0 0 chr11 56621704 56621781 -65222075 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1016 366 23 0 0 chr11 56621781 56621823 -65222033 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1016 286 294 174 65 chr11 56622335 56622582 -65221274 + B4 SINE B4 1 274 -18 1 15 281 335 73 35 chr11 56622991 56623223 -65220633 + MIRc SINE MIR 20 260 -8 1 1017 238 277 13 13 chr11 56623368 56623525 -65220331 + (CATA)n Simple_repeat Simple_repeat 1 157 0 1 1017 860 224 17 6 chr11 56624285 56624460 -65219396 + B3A SINE B2 6 182 -16 1 1017 189 0 0 0 chr11 56624460 56624481 -65219375 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1017 486 0 0 0 chr11 56624517 56624571 -65219285 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 1 1017 334 357 8 23 chr11 56625984 56626116 -65217740 + RSINE1 SINE B4 11 140 -25 1 1017 976 295 137 21 chr11 56626138 56626606 -65217250 + Lx8 LINE L1 6950 7471 -2 2 1017 22 35 0 0 chr11 56626645 56626674 -65217182 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 915 250 68 36 chr11 56626991 56627211 -65216645 - MTD LTR MaLR 0 419 193 2 1017 1267 254 241 7 chr11 56627218 56627646 -65216210 - Lx4B LINE L1 -5 7053 6526 2 1017 508 282 188 57 chr11 56627646 56627838 -65216018 - MTD LTR MaLR -204 217 1 2 1017 676 316 0 22 chr11 56628206 56628387 -65215469 + B3A SINE B2 1 177 -21 2 1017 552 68 0 0 chr11 56629382 56629455 -65214401 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1017 226 253 200 0 chr11 56629492 56629567 -65214289 + MER5A DNA MER1_type 5 94 -95 2 1017 6317 106 30 15 chr11 56629645 56630567 -65213289 - Lx LINE L1 0 6654 5719 2 1017 4303 163 1 0 chr11 56630562 56631269 -65212587 + L1_Mm LINE L1 4874 5581 -302 2 1017 3105 78 1 1 chr11 56631293 56631723 -65212133 - L1_Mus2 LINE L1 -490 6076 5640 2 1017 290 387 111 30 chr11 56631869 56632202 -65211654 + LTR16B2 LTR ERVL 1 360 -102 2 1017 3054 152 106 15 chr11 56632469 56633018 -65210838 - Lx4A LINE L1 0 7058 6460 2 1017 255 154 0 0 chr11 56633018 56633057 -65210799 - MTD LTR MaLR -335 39 1 2 1017 344 310 110 42 chr11 56633058 56633198 -65210658 + L1MA4 LINE L1 5315 5470 -833 2 1017 1206 299 27 11 chr11 56633198 56633567 -65210289 - MTE2b LTR MaLR 0 379 5 2 1017 344 310 110 42 chr11 56633567 56633662 -65210194 + L1MA4 LINE L1 5471 5566 -737 2 1017 478 300 84 66 chr11 56633686 56634025 -65209831 + L1MA4 LINE L1 5639 5987 -313 2 1017 1290 168 82 0 chr11 56634872 56635080 -65208776 - URR1A DNA MER1_type 0 226 2 2 1017 441 333 8 16 chr11 56635081 56635203 -65208653 + RSINE1 SINE B4 17 137 -28 2 1017 233 263 28 55 chr11 56635223 56635368 -65208488 + ORR1B1-int LTR MaLR 614 754 -755 2 1017 402 185 16 150 chr11 56635246 56635373 -65208483 + MT2B LTR ERVL 155 264 -337 2 1017 734 183 0 0 chr11 56635261 56635376 -65208480 + B1_Mus1 SINE Alu 2 116 -32 2 1017 449 227 0 0 chr11 56635409 56635484 -65208372 + URR1A DNA MER1_type 2 76 -150 2 1017 232 48 48 0 chr11 56636732 56636774 -65207082 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1017 339 314 57 21 chr11 56636793 56636985 -65206871 + L1MA4 LINE L1 6086 6284 -16 2 1017 206 274 171 36 chr11 56637186 56637326 -65206530 + MIR3 SINE MIR 36 194 -14 2 1017 1058 258 52 95 chr11 56637504 56637872 -65205984 - ORR1E LTR MaLR -5 354 3 2 1017 1214 267 11 21 chr11 56637929 56638208 -65205648 - B4A SINE B4 -10 282 7 2 1017 1029 267 65 27 chr11 56640735 56640997 -65202859 + MTE2b LTR MaLR 43 314 -65 2 1017 245 355 62 25 chr11 56641329 56641687 -65202169 - L1MEe LINE L1 -801 5345 4975 2 1017 238 348 8 82 chr11 56641688 56641706 -65202150 + MT2B LTR ERVL 148 156 -445 2 1017 552 256 25 33 chr11 56641706 56641827 -65202029 + B1F SINE Alu 1 120 -29 2 1017 2340 296 97 51 chr11 56642002 56643234 -65200622 + ORR1E-int LTR MaLR 183 1531 -49 2 1017 901 332 28 53 chr11 56643234 56643590 -65200266 + ORR1E LTR MaLR 3 349 -10 2 1017 297 338 29 34 chr11 56643790 56643998 -65199858 - L1MEe LINE L1 -3337 2809 2603 2 1017 345 341 18 14 chr11 56644026 56644246 -65199610 - L1MEe LINE L1 -3702 2464 2244 2 1017 198 0 0 0 chr11 56644271 56644293 -65199563 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1017 423 0 0 0 chr11 56644488 56644535 -65199321 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1017 434 245 122 0 chr11 56644548 56644646 -65199210 - PB1D10 SINE Alu -3 114 5 2 1017 305 246 0 15 chr11 56644589 56644655 -65199201 - B4A SINE B4 -146 146 82 2 1017 1597 227 65 6 chr11 56644740 56645081 -65198775 + ORR1D2 LTR MaLR 1 361 -9 2 1017 216 0 0 0 chr11 56645154 56645178 -65198678 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1017 513 32 0 0 chr11 56645178 56645240 -65198616 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1017 467 250 18 9 chr11 56645240 56645349 -65198507 - RSINE1 SINE B4 -41 124 15 2 1017 378 0 0 0 chr11 56645575 56645617 -65198239 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1017 313 341 24 0 chr11 56646110 56646233 -65197623 - MER46C DNA MER2_type -106 232 107 2 1017 189 293 87 39 chr11 56647433 56647536 -65196320 - L2c LINE L2 -27 3360 3253 2 1017 415 352 6 48 chr11 56647628 56647781 -65196075 + B3A SINE B2 5 153 -45 2 1017 504 32 0 0 chr11 56647781 56647843 -65196013 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1017 415 352 6 48 chr11 56647843 56647856 -65196000 + B3A SINE B2 154 164 -34 2 1017 257 288 55 71 chr11 56648217 56648344 -65195512 + LTR48 LTR ERV1 7 131 -656 2 1017 1195 248 40 89 chr11 56648587 56648972 -65194884 - MTE2a LTR MaLR -5 354 6 2 1017 498 61 0 0 chr11 56649119 56649185 -65194671 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1017 21 0 0 0 chr11 56649350 56649371 -65194485 + AT_rich Low_complexity Low_complexity 1 21 0 2 1017 240 325 148 18 chr11 56650081 56650250 -65193606 + L3 LINE CR1 4142 4332 -157 2 1017 331 119 30 0 chr11 56650572 56650639 -65193217 + (TCC)n Simple_repeat Simple_repeat 3 71 0 2 1017 348 152 0 0 chr11 56651416 56651482 -65192374 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1017 400 262 28 14 chr11 56651489 56651632 -65192224 + (TATG)n Simple_repeat Simple_repeat 3 147 0 2 1017 249 191 0 0 chr11 56651915 56651962 -65191894 + MIRc SINE MIR 88 134 -134 2 1017 1205 82 0 0 chr11 56652507 56652654 -65191202 + B1_Mus1 SINE Alu 2 148 0 2 1017 205 51 25 25 chr11 56653162 56653202 -65190654 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1017 681 53 0 0 chr11 56653202 56653295 -65190561 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 2 1017 653 244 22 15 chr11 56653302 56653439 -65190417 - B3A SINE B2 -53 145 8 2 1017 477 286 9 9 chr11 56653459 56653572 -65190284 - PB1D7 SINE Alu -7 113 1 2 1017 284 261 77 51 chr11 56653747 56653864 -65189992 + PB1D9 SINE Alu 1 120 0 2 1017 214 200 25 0 chr11 56653866 56653906 -65189950 + ID SINE ID 12 52 -172 2 1017 233 259 0 0 chr11 56654411 56654465 -65189391 + C-rich Low_complexity Low_complexity 2 55 0 2 1017 494 306 120 16 chr11 56655616 56655799 -65188057 + B4A SINE B4 4 205 -87 2 1017 348 326 22 9 chr11 56656143 56656293 -65187563 + B3A SINE B2 13 171 -27 2 1017 912 167 5 131 chr11 56656732 56656946 -65186910 + ORR1C1 LTR MaLR 1 187 -191 2 1017 434 325 24 65 chr11 56656966 56657134 -65186722 - B4A SINE B4 -128 164 4 2 1017 381 158 0 0 chr11 56657377 56657478 -65186378 + (TA)n Simple_repeat Simple_repeat 1 101 0 2 1017 401 220 7 34 chr11 56657503 56657697 -65186159 + (TA)n Simple_repeat Simple_repeat 1 188 0 2 1017 495 0 0 0 chr11 56658626 56658681 -65185175 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1017 655 234 80 6 chr11 56659578 56659741 -65184115 - B3A SINE B2 -22 176 2 2 1017 37881 26 0 7 chr11 56660026 56665096 -65178760 + L1Md_T LINE L1 561 5586 -297 2 1017 8854 40 0 3 chr11 56665096 56666095 -65177761 + L1Md_T LINE L1 5587 6582 0 2 1017 668 291 24 71 chr11 56666162 56666184 -65177672 + B4 SINE B4 8 29 -263 2 1017 195 42 0 0 chr11 56666184 56666208 -65177648 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1017 668 291 24 71 chr11 56666208 56666420 -65177436 + B4 SINE B4 30 229 -63 2 1017 723 289 40 56 chr11 56666420 56666669 -65177187 + B4A SINE B4 1 245 -47 2 1017 468 35 0 0 chr11 56666697 56666755 -65177101 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1017 240 200 0 57 chr11 56666793 56666846 -65177010 + RSINE1 SINE B4 112 161 -4 2 1017 677 300 12 161 chr11 56666938 56667260 -65176596 + B4A SINE B4 1 274 -18 2 1017 620 262 6 30 chr11 56667335 56667500 -65176356 - B4 SINE B4 -108 184 24 2 1017 2379 181 29 7 chr11 56667535 56667991 -65175865 - Lx2A1 LINE L1 0 7008 6543 2 1017 721 214 20 7 chr11 56669034 56669180 -65174676 - B1_Mur1 SINE Alu -1 148 1 2 1017 578 336 7 0 chr11 56669253 56669396 -65174460 - RSINE1 SINE B4 -16 149 6 2 1017 249 20 140 0 chr11 56669468 56669518 -65174338 + A-rich Low_complexity Low_complexity 3 59 0 2 1017 235 284 27 0 chr11 56669889 56669963 -65173893 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 1017 879 285 39 14 chr11 56669971 56670252 -65173604 - B4A SINE B4 -4 288 1 2 1017 184 253 10 21 chr11 56670991 56671088 -65172768 + (CATATA)n Simple_repeat Simple_repeat 4 99 0 2 1017 248 309 12 12 chr11 56671769 56671851 -65172005 - MER94 DNA AcHobo -11 123 42 2 1017 981 238 78 15 chr11 56671933 56672202 -65171654 + B4 SINE B4 1 286 -6 2 1017 1240 212 128 54 chr11 56672846 56672908 -65170948 + MTEa LTR MaLR 1 58 -321 2 1017 207 0 0 0 chr11 56672908 56672931 -65170925 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1017 1240 212 128 54 chr11 56672931 56673221 -65170635 + MTEa LTR MaLR 59 379 0 2 1017 814 165 39 5 chr11 56673315 56673499 -65170357 - ORR1D1 LTR MaLR 0 374 174 2 1017 287 182 21 28 chr11 56673515 56673656 -65170200 + (CAGAGA)n Simple_repeat Simple_repeat 5 144 0 2 1017 326 80 20 0 chr11 56673662 56673712 -65170144 + (GGA)n Simple_repeat Simple_repeat 3 53 0 2 1017 819 188 26 67 chr11 56673712 56673906 -65169950 - ORR1D1 LTR MaLR -188 186 1 2 1017 316 287 10 19 chr11 56674033 56674136 -65169720 - MER63A DNA AcHobo -59 151 50 2 1017 198 311 106 1 chr11 56674749 56674844 -65169012 + MIR SINE MIR 57 158 -110 2 1017 302 379 92 37 chr11 56675315 56675586 -65168270 + B4A SINE B4 1 286 -6 2 1017 1045 99 0 0 chr11 56675762 56675903 -65167953 + B1_Mus2 SINE Alu 1 141 -6 2 1017 813 114 0 0 chr11 56675907 56676030 -65167826 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 2 1017 510 410 67 25 chr11 56676049 56676560 -65167296 + L4 LINE RTE 497 1028 -1001 2 1017 183 347 166 7 chr11 56676564 56676709 -65167147 + MER5B DNA MER1_type 10 177 -1 2 1017 585 42 0 0 chr11 56676787 56676859 -65166997 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1017 372 43 0 0 chr11 56676867 56676913 -65166943 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1017 228 311 81 0 chr11 56676919 56676993 -65166863 - B3 SINE B2 -34 182 103 2 1017 336 167 0 0 chr11 56677875 56677947 -65165909 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 2 1017 745 184 35 11 chr11 56678555 56678836 -65165020 + (TAGA)n Simple_repeat Simple_repeat 1 287 0 2 1017 2258 144 31 6 chr11 56678836 56679193 -65164663 - ORR1B2 LTR MaLR 0 367 2 3 1017 282 196 75 20 chr11 56679193 56679237 -65164619 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 3 1017 296 232 73 0 chr11 56679258 56679409 -65164447 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 3 1017 647 360 12 0 chr11 56679939 56680197 -65163659 + B4 SINE B4 2 262 -30 3 1017 432 82 0 0 chr11 56680197 56680258 -65163598 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1017 180 275 0 0 chr11 56680689 56680729 -65163127 - L2b LINE L2 -4 3371 3332 3 1017 342 0 0 0 chr11 56681246 56681284 -65162572 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1017 640 289 119 110 chr11 56681336 56681909 -65161947 - RLTR18 LTR ERVK 0 616 49 3 1017 266 26 53 0 chr11 56681909 56681947 -65161909 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 3 1017 640 289 119 110 chr11 56681947 56681980 -65161876 - RLTR18 LTR ERVK -568 48 6 3 1017 237 343 39 10 chr11 56682236 56682339 -65161517 - B1F SINE Alu -1 148 43 3 1017 399 108 0 30 chr11 56683068 56683122 -65160734 + L1Md_F2 LINE L1 6512 6565 -17 3 1017 450 0 0 0 chr11 56683122 56683172 -65160684 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3 1017 399 108 0 30 chr11 56683172 56683184 -65160672 + L1Md_F2 LINE L1 6566 6576 -6 3 1017 2630 163 77 20 chr11 56683191 56683562 -65160294 + RMER1C Other Other 819 1186 -156 3 1017 438 20 0 0 chr11 56683562 56683613 -65160243 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1017 2630 163 77 20 chr11 56683613 56683737 -65160119 + RMER1C Other Other 1187 1341 -1 3 1017 250 324 45 51 chr11 56683893 56684049 -65159807 - MIR SINE MIR -87 175 21 3 1017 210 37 0 0 chr11 56684313 56684340 -65159516 + (GGA)n Simple_repeat Simple_repeat 3 29 0 3 1017 752 88 0 9 chr11 56684341 56684456 -65159400 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 3 1017 1329 73 0 0 chr11 56684469 56684647 -65159209 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 3 1017 234 0 0 0 chr11 56684649 56684675 -65159181 + (GGAAA)n Simple_repeat Simple_repeat 1 26 0 3 1017 1201 254 37 14 chr11 56686030 56686381 -65157475 + ORR1E LTR MaLR 1 359 0 3 1017 4573 128 28 23 chr11 56686662 56687413 -65156443 + RMER6A LTR ERVK 1 755 -1 3 1017 654 290 54 5 chr11 56687548 56687732 -65156124 + B3A SINE B2 6 198 0 3 1017 1134 207 36 0 chr11 56687749 56687971 -65155885 + Lx5 LINE L1 6818 7047 -3 3 1017 342 0 0 0 chr11 56688042 56688080 -65155776 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1017 568 288 39 119 chr11 56688101 56688412 -65155444 - B4 SINE B4 -2 290 5 3 1017 26 0 0 0 chr11 56688785 56688811 -65155045 + AT_rich Low_complexity Low_complexity 1 26 0 3 1017 400 341 22 0 chr11 56688823 56688958 -65154898 - RSINE1 SINE B4 -16 149 12 3 1017 696 286 5 16 chr11 56689591 56689776 -65154080 - B3A SINE B2 -15 183 1 3 1017 243 320 57 32 chr11 56690718 56690876 -65152980 - L2a LINE L2 -40 3386 3225 3 1017 423 0 0 0 chr11 56691086 56691133 -65152723 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1017 746 299 40 55 chr11 56691691 56692063 -65151793 + MTE2a LTR MaLR 35 417 -2 3 1017 1270 168 107 28 chr11 56692130 56692598 -65151258 - RLTR16 LTR ERVK 0 505 1 3 1017 489 212 0 0 chr11 56693268 56693381 -65150475 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 3 1017 281 294 8 31 chr11 56694578 56694708 -65149148 + CT-rich Low_complexity Low_complexity 2 128 0 3 1017 2453 92 45 0 chr11 56695859 56696216 -65147640 - L1_Mus3 LINE L1 0 6638 6266 3 1017 303 28 0 0 chr11 56696335 56696371 -65147485 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1017 622 320 0 0 chr11 56696395 56696548 -65147308 - RSINE1 SINE B4 -10 155 3 3 1017 284 358 0 9 chr11 56696548 56696655 -65147201 - MER63D DNA AcHobo -142 919 814 3 1017 238 300 25 0 chr11 56696937 56697017 -65146839 - RSINE1 SINE B4 -2 163 82 3 1017 618 274 0 19 chr11 56697204 56697360 -65146496 - ID_B1 SINE B4 -4 220 68 3 1017 528 281 11 0 chr11 56697920 56698105 -65145751 + L1_Rod LINE L1 5650 5836 -11 3 1017 529 213 216 20 chr11 56698418 56698571 -65145285 + B3A SINE B2 1 183 -15 3 1017 1084 81 12 0 chr11 56699011 56699172 -65144684 + (GGAGA)n Simple_repeat Simple_repeat 3 165 0 3 1017 1196 145 209 117 chr11 56699836 56700195 -65143661 + MT2A LTR ERVL 1 392 -141 3 1017 561 302 108 22 chr11 56702094 56702649 -65141207 + L1_Mur3 LINE L1 1230 1832 -4048 3 1017 814 259 167 9 chr11 56702740 56703064 -65140792 - MTEb LTR MaLR -4 375 1 3 1017 217 333 76 84 chr11 56703773 56704022 -65139834 - MIRb SINE MIR -8 260 14 3 1017 231 296 129 34 chr11 56705435 56705582 -65138274 + L2c LINE L2 3036 3196 -191 3 1017 269 288 0 14 chr11 56705795 56705869 -65137987 + A-rich Low_complexity Low_complexity 5 77 0 3 1017 450 0 0 0 chr11 56705907 56705957 -65137899 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 1017 1194 221 120 3 chr11 56707026 56707343 -65136513 + MTEb LTR MaLR 18 371 -8 3 1017 666 334 98 36 chr11 56707514 56707992 -65135864 + LTR53 LTR ERVL 3 510 -9 3 1017 285 265 29 10 chr11 56708594 56708697 -65135159 + CT-rich Low_complexity Low_complexity 4 108 0 3 1017 208 175 0 24 chr11 56708697 56708738 -65135118 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 3 1017 233 282 38 13 chr11 56708762 56708841 -65135015 - MIRb SINE MIR 0 268 188 3 1017 423 248 38 0 chr11 56710545 56710650 -65133206 - B1F SINE Alu -1 148 40 3 1017 269 355 75 28 chr11 56711262 56711491 -65132365 + MLT1F1 LTR MaLR 313 550 -10 3 1017 758 300 53 30 chr11 56711541 56711806 -65132050 - B4 SINE B4 -14 278 8 3 1017 977 246 88 42 chr11 56711830 56711857 -65131999 - MTE2a LTR MaLR 0 379 350 3 1017 369 0 0 0 chr11 56711857 56711898 -65131958 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1017 977 253 91 42 chr11 56711898 56712238 -65131618 - MTE2a LTR MaLR -30 389 22 3 1017 797 99 8 0 chr11 56712560 56712681 -65131175 + (TC)n Simple_repeat Simple_repeat 1 122 0 3 1017 198 0 0 0 chr11 56712902 56712924 -65130932 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1017 295 333 60 43 chr11 56713482 56713667 -65130189 + MIR SINE MIR 4 191 -71 3 1017 261 243 57 0 chr11 56715058 56715128 -65128728 - L1M4c LINE L1 -289 6749 6676 3 1017 180 0 0 0 chr11 56715245 56715265 -65128591 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1017 283 242 21 32 chr11 56715337 56715431 -65128425 - PB1D10 SINE Alu 0 117 25 3 1017 325 303 0 0 chr11 56715498 56715574 -65128282 - ID4_ SINE ID -5 78 3 3 1017 426 308 7 33 chr11 56715582 56715733 -65128123 - B1F SINE Alu 0 149 3 3 1017 503 274 89 85 chr11 56715736 56716426 -65127430 - L1M4c LINE L1 -485 6549 5855 3 1017 514 296 63 39 chr11 56716649 56716967 -65126889 - L1M4c LINE L1 -4875 2459 2082 3 1017 344 216 0 10 chr11 56717039 56717142 -65126714 + (ATG)n Simple_repeat Simple_repeat 2 103 0 3 1017 364 281 123 52 chr11 56717144 56717583 -65126273 - L1M4c LINE L1 -4914 2094 1625 3 1017 481 313 120 0 chr11 56717706 56717965 -65125891 - L1M4c LINE L1 -5433 1471 1182 3 1017 382 101 29 0 chr11 56717993 56718062 -65125794 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1017 184 167 32 32 chr11 56718095 56718157 -65125699 + (TATG)n Simple_repeat Simple_repeat 3 64 0 3 1017 441 308 15 0 chr11 56718159 56718289 -65125567 - L1M4c LINE L1 -5756 1148 1017 3 1017 410 250 45 39 chr11 56718582 56718761 -65125095 - L1M4c LINE L1 -6333 571 392 3 1017 321 93 0 0 chr11 56718898 56718952 -65124904 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 3 1017 383 249 104 115 chr11 56718991 56719173 -65124683 - B3A SINE B2 -18 180 1 3 1017 564 299 14 0 chr11 56720932 56721079 -65122777 + B3A SINE B2 3 151 -47 3 1017 236 160 40 0 chr11 56721095 56721145 -65122711 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 3 1017 198 236 0 0 chr11 56721145 56721200 -65122656 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1017 312 94 0 0 chr11 56721352 56721405 -65122451 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1017 228 294 8 121 chr11 56721410 56721423 -65122433 - B2_Mm2 SINE B2 -62 133 125 3 1017 183 42 0 0 chr11 56721423 56721447 -65122409 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1017 430 294 8 121 chr11 56721447 56721557 -65122299 - B3A SINE B2 -62 136 24 3 1017 436 292 73 72 chr11 56721628 56721910 -65121946 + B4 SINE B4 27 274 -18 3 1017 330 194 0 0 chr11 56721910 56721982 -65121874 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1017 349 127 25 0 chr11 56722418 56722497 -65121359 + (TTTG)n Simple_repeat Simple_repeat 3 83 0 3 1017 197 180 20 0 chr11 56723783 56723833 -65120023 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1017 233 287 11 11 chr11 56723857 56723945 -65119911 + (CATA)n Simple_repeat Simple_repeat 4 91 0 3 1017 787 245 75 82 chr11 56724029 56724309 -65119547 + MT2B LTR ERVL 254 531 -70 3 1017 375 121 0 0 chr11 56724312 56724370 -65119486 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1017 264 122 0 0 chr11 56724370 56724411 -65119445 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1017 330 132 0 0 chr11 56724433 56724486 -65119370 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 3 1017 1176 161 36 27 chr11 56724527 56724750 -65119106 - URR1B DNA MER1_type 0 225 1 3 1017 12954 168 26 12 chr11 56724774 56726995 -65116861 + MERVL_2A-int LTR ERVL 1 2253 -3508 3 1017 8994 159 38 11 chr11 56726976 56728583 -65115273 + MERVL_2A-int LTR ERVL 2553 4275 -1486 3 1017 3413 163 160 17 chr11 56728583 56729227 -65114629 + RMER19A LTR ERVK 1 736 -1 3 1017 8994 171 54 8 chr11 56729227 56729851 -65114005 + MERVL_2A-int LTR ERVL 4276 4911 -850 3 1017 5937 88 32 16 chr11 56729873 56730097 -65113759 - Lx3B LINE L1 -510 6463 6239 3 1017 567 0 0 0 chr11 56730097 56730160 -65113696 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1017 5937 100 18 19 chr11 56730160 56731369 -65112487 - Lx3B LINE L1 -735 6238 5037 3 1017 639 100 0 0 chr11 56731441 56731551 -65112305 + (TC)n Simple_repeat Simple_repeat 2 111 0 3 1017 333 0 0 0 chr11 56731551 56731588 -65112268 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1017 424 281 26 9 chr11 56731589 56731704 -65112152 - ID_B1 SINE B4 -21 203 87 3 1017 481 254 57 143 chr11 56731751 56731981 -65111875 - B3 SINE B2 -6 210 1 3 1017 406 235 195 20 chr11 56732154 56732354 -65111502 - MER106A DNA MER1_type -1 235 1 3 1017 740 256 22 16 chr11 56732369 56732552 -65111304 - MER20 DNA MER1_type -7 212 29 3 1017 189 0 0 0 chr11 56732587 56732608 -65111248 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1017 338 319 18 0 chr11 56732738 56732851 -65111005 - ID_B1 SINE B4 -8 216 102 3 1017 1273 275 22 31 chr11 56732877 56733233 -65110623 + MTE2b LTR MaLR 1 353 -26 4 1017 52 50 0 0 chr11 56733335 56733415 -65110441 + AT_rich Low_complexity Low_complexity 1 80 0 4 1017 433 337 35 40 chr11 56733765 56733938 -65109918 - B3A SINE B2 0 198 27 4 1017 1571 134 20 68 chr11 56735432 56735727 -65108129 + L1Md_F2 LINE L1 6292 6572 -10 4 1017 4948 151 54 49 chr11 56735746 56736642 -65107214 - RMER19B LTR ERVK 0 902 3 4 1017 371 333 16 24 chr11 56737127 56737253 -65106603 + MER58A DNA MER1_type 30 154 -70 4 1017 544 280 160 84 chr11 56737304 56737855 -65106001 + RMER13A LTR ERVK 21 612 -15 4 1017 204 308 88 0 chr11 56739586 56739677 -65104179 + MIR3 SINE MIR 83 181 -27 4 1017 237 282 56 0 chr11 56740220 56740291 -65103565 - MIR SINE MIR -73 135 61 4 1017 381 347 11 0 chr11 56740684 56740860 -65102996 + (CA)n Simple_repeat Simple_repeat 2 179 0 4 1017 491 204 12 23 chr11 56740882 56741053 -65102803 + (CATA)n Simple_repeat Simple_repeat 2 170 0 4 1017 383 279 0 7 chr11 56741093 56741248 -65102608 + (CATA)n Simple_repeat Simple_repeat 4 157 0 4 1017 264 59 0 0 chr11 56741381 56741415 -65102441 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1017 1073 250 92 19 chr11 56741750 56742087 -65101769 - MTE2b LTR MaLR 0 370 19 4 1017 353 333 34 0 chr11 56742447 56742594 -65101262 - L2a LINE L2 0 3426 3275 4 1017 360 0 0 0 chr11 56743089 56743129 -65100727 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1017 3655 182 123 16 chr11 56743141 56743956 -65099900 + RMER19B LTR ERVK 1 902 0 4 1017 531 266 47 0 chr11 56744050 56744178 -65099678 - RSINE1 SINE B4 -14 151 18 4 1017 629 266 58 43 chr11 56744190 56744398 -65099458 - B4 SINE B4 -66 226 16 4 1017 266 285 108 44 chr11 56744472 56744630 -65099226 - MLT1H LTR MaLR 0 549 382 4 1017 231 342 73 13 chr11 56744760 56744911 -65098945 - MLT1H LTR MaLR -328 221 62 4 1017 689 247 28 11 chr11 56745353 56745529 -65098327 - B3A SINE B2 -18 180 2 4 1017 609 14 0 0 chr11 56746159 56746229 -65097627 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1017 191 83 83 0 chr11 56746665 56746701 -65097155 + GA-rich Low_complexity Low_complexity 6 44 0 4 1017 324 0 0 0 chr11 56746731 56746767 -65097089 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 4 1017 312 119 0 0 chr11 56747504 56747563 -65096293 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1017 629 293 30 20 chr11 56747564 56747766 -65096090 - B3 SINE B2 -11 205 2 4 1017 191 222 22 0 chr11 56748056 56748101 -65095755 - MIR SINE MIR -75 133 88 4 1017 928 286 71 0 chr11 56748147 56748196 -65095660 + MTEa LTR MaLR 5 53 -326 4 1017 369 0 0 0 chr11 56748196 56748237 -65095619 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1017 928 286 71 0 chr11 56748237 56748453 -65095403 + MTEa LTR MaLR 54 288 -91 4 1017 190 296 65 43 chr11 56748922 56749014 -65094842 - L2a LINE L2 -6 3420 3327 4 1017 213 312 0 15 chr11 56749411 56749476 -65094380 + RSINE1 SINE B4 2 65 -100 4 1017 501 47 0 0 chr11 56749640 56749704 -65094152 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1017 252 0 0 0 chr11 56749704 56749731 -65094125 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1017 992 262 51 65 chr11 56750257 56750324 -65093532 + MTE2b LTR MaLR 5 70 -309 4 1017 2305 105 12 6 chr11 56750324 56750649 -65093207 + ORR1A2 LTR MaLR 1 327 0 4 1017 992 262 51 65 chr11 56750649 56750932 -65092924 + MTE2b LTR MaLR 71 350 -29 4 1017 279 308 19 19 chr11 56751255 56751361 -65092495 + MLT1H1 LTR MaLR 289 394 -161 4 1017 782 243 84 0 chr11 56751519 56751721 -65092135 + ID_B1 SINE B4 4 222 -2 4 1017 225 196 0 0 chr11 56751721 56751772 -65092084 + GA-rich Low_complexity Low_complexity 2 52 0 4 1017 8106 56 15 2 chr11 56752038 56753552 -65090304 - L1Md_F2 LINE L1 0 6582 5058 4 1017 9100 53 0 8 chr11 56753534 56753798 -65090058 + L1_Mm LINE L1 3929 4192 -1691 4 127 3553 20 2 0 chr11 56753798 56754193 -65089663 + MTA_Mm LTR MaLR 1 396 0 4 1018 9100 53 0 8 chr11 56754193 56755073 -65088783 + L1_Mm LINE L1 4193 5064 -819 4 1018 691 258 30 186 chr11 56755087 56755453 -65088403 + RMER15 LTR ERVL 233 541 -34 4 1018 683 12 12 0 chr11 56755482 56755566 -65088290 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1018 22 0 0 0 chr11 56756211 56756233 -65087623 + AT_rich Low_complexity Low_complexity 1 22 0 4 1018 471 112 0 36 chr11 56758442 56758525 -65085331 - L1Md_F2 LINE L1 -3 6579 6500 4 1018 641 276 171 26 chr11 56758956 56759190 -65084666 + ORR1E LTR MaLR 8 275 -84 4 1018 7995 64 1 31 chr11 56759662 56761010 -65082846 - L1_Mus1 LINE L1 -1 6566 5245 4 1018 401 283 78 28 chr11 56761979 56762121 -65081735 - RSINE1 SINE B4 -14 151 3 4 1018 450 0 0 0 chr11 56762206 56762256 -65081600 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1018 422 235 17 9 chr11 56762286 56762402 -65081454 - L1MA4A LINE L1 -372 5931 5815 4 1018 299 250 40 10 chr11 56762448 56762549 -65081307 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1018 265 238 10 10 chr11 56762570 56762672 -65081184 + (TG)n Simple_repeat Simple_repeat 1 102 0 4 1018 573 337 98 36 chr11 56762672 56762946 -65080910 - B4 SINE B4 0 292 2 4 1018 302 242 0 57 chr11 56763006 56763076 -65080780 + RSINE1 SINE B4 88 153 -12 4 1018 416 318 68 98 chr11 56763137 56763371 -65080485 + B4A SINE B4 3 229 -63 4 1018 251 28 0 27 chr11 56763581 56763618 -65080238 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1018 225 100 0 0 chr11 56763618 56763648 -65080208 + Lx8 LINE L1 6340 6369 -1104 4 1018 1923 274 50 102 chr11 56763711 56764543 -65079313 + Lx8 LINE L1 6620 7408 -65 4 1018 357 19 19 0 chr11 56764588 56764641 -65079215 - L1Md_T LINE L1 0 6582 6529 4 1018 312 175 0 0 chr11 56764923 56764986 -65078870 + GA-rich Low_complexity Low_complexity 3 65 0 4 1018 282 73 0 0 chr11 56765008 56765049 -65078807 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 1018 912 268 45 77 chr11 56765495 56765782 -65078074 - B4 SINE B4 -6 286 9 4 1018 204 188 19 56 chr11 56766195 56766302 -65077554 + GA-rich Low_complexity Low_complexity 3 105 0 4 1018 183 186 0 0 chr11 56766300 56766343 -65077513 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 1018 410 160 17 160 chr11 56766537 56766656 -65077200 + Lx6 LINE L1 7126 7227 -233 4 1018 472 268 224 34 chr11 56766656 56767008 -65076848 - MTD LTR MaLR 0 419 1 4 1018 602 230 92 18 chr11 56768804 56768968 -65074888 + B4A SINE B4 99 274 -18 4 1018 312 256 21 72 chr11 56770016 56770113 -65073743 + ORR1D2 LTR MaLR 3 94 -276 4 1018 1613 279 12 18 chr11 56770156 56770655 -65073201 - RMER5 LTR ERV1 -2 532 37 4 1018 192 40 0 0 chr11 56770930 56770955 -65072901 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1018 945 142 0 0 chr11 56771040 56771209 -65072647 + (CA)n Simple_repeat Simple_repeat 2 170 0 4 1018 313 215 46 0 chr11 56771915 56771980 -65071876 + PB1D10 SINE Alu 49 116 -1 4 1018 958 257 48 56 chr11 56772055 56772413 -65071443 - ORR1E LTR MaLR -2 357 3 4 1018 187 335 131 17 chr11 56773319 56773495 -65070361 - MIR SINE MIR -39 223 28 4 1018 936 132 20 0 chr11 56773855 56774007 -65069849 + B2_Mm2 SINE B2 27 181 -14 4 1018 414 57 0 0 chr11 56774896 56774949 -65068907 + (TTA)n Simple_repeat Simple_repeat 3 55 0 4 1018 2158 189 42 12 chr11 56775719 56776127 -65067729 - MTC LTR MaLR -1 420 1 4 1018 2817 42 62 0 chr11 56776583 56776919 -65066937 - IAPEY2_LTR LTR ERVK 0 357 1 4 1018 8080 208 102 12 chr11 56778495 56779121 -65064735 - Lx6 LINE L1 -15 7445 6761 4 1018 414 0 0 0 chr11 56779121 56779167 -65064689 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1018 8080 208 102 12 chr11 56779167 56780141 -65063715 - Lx6 LINE L1 -700 6760 5694 4 1018 2294 104 0 71 chr11 56780141 56780221 -65063635 - ORR1A2 LTR MaLR 0 327 272 4 1018 1163 88 0 0 chr11 56780221 56780369 -65063487 - B1_Mus1 SINE Alu 0 148 1 4 1018 2294 104 0 71 chr11 56780369 56780640 -65063216 - ORR1A2 LTR MaLR -56 271 1 4 1018 8080 178 22 20 chr11 56780640 56780940 -65062916 - Lx6 LINE L1 -1767 5693 5392 4 1018 724 329 38 38 chr11 56781085 56781343 -65062513 + B4A SINE B4 2 262 -30 4 1018 252 0 0 0 chr11 56781343 56781371 -65062485 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1018 724 329 38 38 chr11 56781371 56781403 -65062453 + B4A SINE B4 263 292 0 4 1018 1087 122 72 6 chr11 56781504 56781685 -65062171 + B2_Mm2 SINE B2 3 195 0 4 1018 294 148 0 0 chr11 56782409 56782463 -65061393 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1018 579 271 39 42 chr11 56782469 56782686 -65061170 - MTD LTR MaLR -207 212 17 4 1018 439 297 40 89 chr11 56782793 56783139 -65060717 + ORR1E LTR MaLR 10 365 -14 4 1018 218 380 18 0 chr11 56783703 56783816 -65060040 + L2c LINE L2 3273 3387 0 4 1018 829 50 17 0 chr11 56783966 56784085 -65059771 + (TG)n Simple_repeat Simple_repeat 1 121 0 4 1018 499 307 78 0 chr11 56784223 56784389 -65059467 - B3A SINE B2 -16 182 4 4 1018 777 335 12 47 chr11 56784396 56784650 -65059206 - B4A SINE B4 -47 245 1 4 1018 1005 33 0 0 chr11 56785538 56785659 -65058197 + (CA)n Simple_repeat Simple_repeat 2 122 0 4 1018 318 286 0 23 chr11 56785857 56785943 -65057913 - RSINE1 SINE B4 -80 85 2 4 1018 351 0 0 0 chr11 56786732 56786771 -65057085 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1018 204 125 0 0 chr11 56786947 56786979 -65056877 + (CGA)n Simple_repeat Simple_repeat 3 34 0 4 1018 849 281 58 27 chr11 56787050 56787310 -65056546 + B4A SINE B4 3 270 -22 4 1018 194 128 26 0 chr11 56787794 56787833 -65056023 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1018 483 297 179 24 chr11 56787841 56788093 -65055763 - B4A SINE B4 0 292 2 4 1018 253 333 0 12 chr11 56788367 56788449 -65055407 + CT-rich Low_complexity Low_complexity 1 81 0 4 1018 465 19 0 0 chr11 56788611 56788665 -65055191 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1018 293 276 13 0 chr11 56788858 56788934 -65054922 - B4 SINE B4 -214 78 2 4 1018 658 228 127 0 chr11 56788946 56789135 -65054721 - ID_B1 SINE B4 -9 215 3 4 1018 210 333 0 57 chr11 56790330 56790400 -65053456 + L2b LINE L2 3304 3369 -6 5 1018 1058 260 88 26 chr11 56790457 56790780 -65053076 + ORR1E LTR MaLR 6 354 -5 5 1018 273 197 0 0 chr11 56790868 56790939 -65052917 + (TGGA)n Simple_repeat Simple_repeat 2 72 0 5 1018 258 125 0 0 chr11 56791620 56791668 -65052188 + (CAGAGA)n Simple_repeat Simple_repeat 3 50 0 5 1018 215 323 0 0 chr11 56791672 56791737 -65052119 + GA-rich Low_complexity Low_complexity 1 65 0 5 1018 1062 267 121 43 chr11 56792018 56792390 -65051466 + MTD LTR MaLR 5 405 -14 5 1018 1436 247 58 18 chr11 56792423 56792765 -65051091 - MTEa LTR MaLR -4 375 20 5 1018 459 0 0 0 chr11 56792777 56792828 -65051028 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1018 236 370 14 42 chr11 56792902 56793046 -65050810 - MIRb SINE MIR -31 237 98 5 1018 2437 98 0 52 chr11 56793301 56793646 -65050210 + ORR1A2 LTR MaLR 1 327 0 5 1018 338 360 181 10 chr11 56793811 56794010 -65049846 + Tigger7 DNA MER2_type 8 240 -2251 5 1018 262 302 35 78 chr11 56794153 56794268 -65049588 + Tigger7 DNA MER2_type 2382 2491 0 5 1018 369 304 8 67 chr11 56794930 56795050 -65048806 + PB1D10 SINE Alu 4 116 -1 5 1018 256 226 47 31 chr11 56795987 56796115 -65047741 + (TATG)n Simple_repeat Simple_repeat 4 133 0 5 1018 358 236 139 43 chr11 56796562 56796677 -65047179 + PB1 SINE Alu 1 126 -1 5 1018 258 288 37 12 chr11 56796689 56796770 -65047086 + ID4_ SINE ID 1 83 0 5 1018 318 310 6 38 chr11 56796799 56796943 -65046913 - MIR SINE MIR -51 217 74 5 1018 570 15 0 0 chr11 56797331 56797398 -65046458 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1018 203 0 37 0 chr11 56797499 56797526 -65046330 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 5 1018 826 272 0 24 chr11 56797556 56797763 -65046093 - B4 SINE B4 -87 205 4 5 1018 237 311 152 24 chr11 56797865 56797990 -65045866 - MIR3 SINE MIR -53 155 15 5 1018 2224 116 22 0 chr11 56798599 56798919 -65044937 - ORR1A2 LTR MaLR 0 327 1 5 1018 285 248 44 88 chr11 56799333 56799470 -65044386 + L1ME1 LINE L1 5894 6024 -155 5 1018 225 0 0 0 chr11 56800641 56800666 -65043190 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1018 1473 272 14 8 chr11 56800969 56801321 -65042535 + ORR1E LTR MaLR 1 354 -5 5 1018 831 316 240 46 chr11 56801670 56803200 -65040656 + L2 LINE L2 818 2643 -776 5 1018 265 218 0 0 chr11 56803267 56803322 -65040534 - B3 SINE B2 -10 206 152 5 1018 279 0 0 0 chr11 56803348 56803379 -65040477 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1018 396 0 0 0 chr11 56803379 56803422 -65040434 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1018 547 293 0 22 chr11 56803451 56803587 -65040269 - B3 SINE B2 -82 134 2 5 1018 510 210 10 10 chr11 56804048 56804149 -65039707 - ORR1E LTR MaLR -227 132 32 5 1018 522 0 0 0 chr11 56805375 56805433 -65038423 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1018 737 250 38 42 chr11 56805549 56805762 -65038094 - B3 SINE B2 -4 212 1 5 1018 571 252 32 71 chr11 56806244 56806398 -65037458 + B3A SINE B2 51 198 0 5 1018 242 217 122 34 chr11 56806504 56806652 -65037204 - L1MC5 LINE L1 -179 7782 7622 5 1018 931 299 118 37 chr11 56806662 56807044 -65036812 + MTD LTR MaLR 5 417 -2 5 1018 244 182 33 22 chr11 56807462 56807552 -65036304 + GA-rich Low_complexity Low_complexity 1 91 0 5 1018 747 87 0 0 chr11 56807583 56807687 -65036169 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 5 1018 1541 190 102 23 chr11 56808252 56808596 -65035260 + ORR1D1 LTR MaLR 4 374 0 5 1018 259 256 108 12 chr11 56808599 56808682 -65035174 + L2c LINE L2 3069 3159 -228 5 1018 726 12 0 0 chr11 56808954 56809037 -65034819 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1018 438 36 0 0 chr11 56809154 56809210 -65034646 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 5 1018 366 23 0 0 chr11 56809346 56809389 -65034467 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 1018 499 282 8 8 chr11 56809397 56809529 -65034327 - B1F SINE Alu -17 132 1 5 1018 526 273 38 25 chr11 56809589 56809747 -65034109 - RSINE1 SINE B4 -4 161 2 5 1018 229 384 8 0 chr11 56809882 56810015 -65033841 + (TA)n Simple_repeat Simple_repeat 2 135 0 5 1018 418 291 23 23 chr11 56809990 56810166 -65033690 + (CATA)n Simple_repeat Simple_repeat 3 178 0 5 1018 329 62 0 20 chr11 56810179 56810228 -65033628 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1018 244 348 0 26 chr11 56810233 56810348 -65033508 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 5 1018 357 24 0 0 chr11 56810365 56810407 -65033449 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1018 447 19 0 0 chr11 56810407 56810458 -65033398 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1018 398 337 6 17 chr11 56810459 56810688 -65033168 + (CATA)n Simple_repeat Simple_repeat 1 226 0 5 1018 218 391 0 0 chr11 56810659 56810774 -65033082 + (CA)n Simple_repeat Simple_repeat 1 115 0 5 1018 402 293 48 12 chr11 56811534 56811693 -65032163 - MER20 DNA MER1_type 0 219 55 5 1018 768 201 189 5 chr11 56811693 56811878 -65031978 + B4 SINE B4 1 219 -73 5 1018 334 273 147 21 chr11 56811872 56812063 -65031793 - RMER12 LTR ERVK -359 963 749 5 1018 291 93 0 0 chr11 56812132 56812175 -65031681 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1018 1067 283 70 72 chr11 56812458 56812846 -65031010 + MTD LTR MaLR 18 404 -15 5 1018 186 43 0 0 chr11 56813896 56813919 -65029937 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1018 285 347 0 31 chr11 56813921 56814019 -65029837 - PB1D10 SINE Alu 0 117 23 5 1018 267 152 0 0 chr11 56814063 56814109 -65029747 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1018 985 304 39 14 chr11 56814137 56814209 -65029647 - B4A SINE B4 0 292 221 5 1018 3501 71 23 15 chr11 56814209 56814683 -65029173 + L1Md_F2 LINE L1 6105 6582 0 5 1018 985 304 39 14 chr11 56814683 56814894 -65028962 - B4A SINE B4 -72 220 2 5 1018 442 346 59 32 chr11 56815172 56815393 -65028463 + MIRb SINE MIR 27 253 -15 5 1018 378 0 0 0 chr11 56815457 56815499 -65028357 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1018 267 140 0 0 chr11 56815573 56815623 -65028233 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1018 207 0 0 0 chr11 56815649 56815672 -65028184 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1018 367 293 32 158 chr11 56815875 56816122 -65027734 + ORR1E LTR MaLR 18 233 -126 5 1018 381 288 54 0 chr11 56816141 56816252 -65027604 - ID_B1 SINE B4 -7 217 101 5 1018 1071 24 0 0 chr11 56816781 56816907 -65026949 + (TG)n Simple_repeat Simple_repeat 1 126 0 5 1018 243 0 0 0 chr11 56816907 56816933 -65026923 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1018 388 261 11 43 chr11 56816952 56817044 -65026812 - RSINE1 SINE B4 -17 148 60 5 1018 22 35 0 0 chr11 56817442 56817471 -65026385 + AT_rich Low_complexity Low_complexity 1 29 0 5 1018 201 74 0 0 chr11 56817515 56817542 -65026314 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1018 345 316 34 34 chr11 56819049 56819167 -65024689 + AmnSINE1 SINE SINE 458 575 0 5 1018 689 288 42 31 chr11 56819796 56820083 -65023773 - B4A SINE B4 -2 290 1 5 1018 855 65 0 0 chr11 56820108 56820231 -65023625 + (TG)n Simple_repeat Simple_repeat 1 123 0 5 1018 262 196 22 0 chr11 56820231 56820277 -65023579 + Charlie8 DNA MER1_type 152 198 -2230 5 1018 371 275 199 0 chr11 56820876 56821007 -65022849 + RSINE1 SINE B4 3 159 -6 5 1018 579 337 10 0 chr11 56821044 56821243 -65022613 + B3 SINE B2 2 202 -14 5 1018 229 254 32 0 chr11 56821250 56821313 -65022543 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 5 1018 556 312 44 22 chr11 56821371 56821551 -65022305 - MER20 DNA MER1_type -33 186 3 5 1018 423 152 0 0 chr11 56821855 56821934 -65021922 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1018 180 0 0 0 chr11 56822174 56822194 -65021662 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 5 1018 640 234 43 7 chr11 56823856 56823994 -65019862 + RSINE1 SINE B4 1 143 -22 5 1018 369 0 0 0 chr11 56823996 56824037 -65019819 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1018 477 50 0 0 chr11 56824819 56824879 -65018977 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 1018 799 92 15 0 chr11 56825090 56825221 -65018635 + (GA)n Simple_repeat Simple_repeat 1 133 0 5 1018 207 114 0 0 chr11 56825390 56825425 -65018431 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 5 1018 243 152 0 0 chr11 56825665 56825711 -65018145 + T-rich Low_complexity Low_complexity 1 46 0 5 1018 558 0 0 0 chr11 56825857 56825919 -65017937 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1018 531 0 0 0 chr11 56826454 56826513 -65017343 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1018 477 127 0 0 chr11 56828249 56828328 -65015528 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 5 1018 212 336 95 38 chr11 56829943 56830101 -65013755 - MIRb SINE MIR -9 259 93 5 1018 894 309 54 38 chr11 56830380 56830753 -65013103 - MTEa LTR MaLR 0 379 1 5 1018 625 276 39 56 chr11 56830991 56831142 -65012714 + B3 SINE B2 6 160 -56 5 1018 246 128 0 0 chr11 56831142 56831181 -65012675 + (CG)n Simple_repeat Simple_repeat 1 39 0 5 1018 625 276 39 56 chr11 56831181 56831209 -65012647 + B3 SINE B2 161 182 -34 5 1018 229 297 94 47 chr11 56831189 56831295 -65012561 + Charlie24 DNA MER1_type 2334 2444 -6 5 1018 333 0 0 0 chr11 56832758 56832795 -65011061 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1018 306 301 134 78 chr11 56833588 56833923 -65009933 + Lx8 LINE L1 7109 7462 -11 5 1018 272 347 79 36 chr11 56834473 56834709 -65009147 + MER102c DNA MER1_type 36 292 -39 5 1018 330 231 121 24 chr11 56835444 56835568 -65008288 - RMER15 LTR ERVL -163 412 277 5 1018 363 226 12 0 chr11 56836139 56836223 -65007633 - MER117 DNA MER1_type -107 90 6 6 1018 314 235 23 23 chr11 56836347 56836434 -65007422 + CT-rich Low_complexity Low_complexity 3 89 0 6 1018 180 0 0 0 chr11 56836750 56836770 -65007086 + (TATATG)n Simple_repeat Simple_repeat 6 25 0 6 1018 710 300 23 80 chr11 56836770 56837071 -65006785 - B4 SINE B4 -8 284 1 6 1018 8210 34 0 0 chr11 56837162 56838719 -65005137 - L1Md_T LINE L1 0 6582 5026 6 1018 190 222 0 0 chr11 56839143 56839179 -65004677 - L2 LINE L2 -556 2863 2828 6 1018 414 260 28 19 chr11 56839555 56839661 -65004195 + B1F SINE Alu 28 134 -15 6 1018 584 192 16 0 chr11 56839679 56839868 -65003988 + GA-rich Low_complexity Low_complexity 1 192 0 6 1018 318 26 0 0 chr11 56840112 56840151 -65003705 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 6 1018 647 65 11 0 chr11 56840416 56840509 -65003347 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 1018 228 281 0 15 chr11 56840573 56840638 -65003218 - B4A SINE B4 -36 256 193 6 1018 23 0 0 0 chr11 56840786 56840809 -65003047 + AT_rich Low_complexity Low_complexity 1 23 0 6 1018 600 265 34 0 chr11 56841947 56842094 -65001762 - RSINE1 SINE B4 -10 155 4 6 1018 557 239 248 17 chr11 56843126 56843270 -65000586 + RLTR20D LTR ERVK 1 195 -373 6 1018 741 53 0 0 chr11 56843270 56843364 -65000492 + (GGA)n Simple_repeat Simple_repeat 1 94 0 6 1018 557 239 248 17 chr11 56843364 56843449 -65000407 + RLTR20D LTR ERVK 196 282 -286 6 1018 677 253 25 19 chr11 56843438 56843497 -65000359 + RLTR20D LTR ERVK 407 467 -101 6 1018 468 35 0 0 chr11 56843497 56843555 -65000301 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1018 677 253 25 19 chr11 56843555 56843656 -65000200 + RLTR20D LTR ERVK 468 568 0 6 1018 27 49 0 0 chr11 56844924 56844965 -64998891 + AT_rich Low_complexity Low_complexity 1 41 0 6 1018 654 230 6 52 chr11 56844965 56845139 -64998717 - B3A SINE B2 0 198 33 6 1018 254 135 0 156 chr11 56845505 56845716 -64998140 + (CACCT)n Simple_repeat Simple_repeat 3 180 0 6 1018 235 253 0 156 chr11 56845684 56845895 -64997961 + C-rich Low_complexity Low_complexity 1 178 0 6 1018 198 0 0 0 chr11 56847161 56847183 -64996673 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1018 1283 257 80 30 chr11 56847266 56847627 -64996229 - MTEa LTR MaLR 0 379 1 6 1018 396 318 83 22 chr11 56847639 56847819 -64996037 + MER3 DNA MER1_type 13 203 -6 6 1018 420 311 60 6 chr11 56848903 56849071 -64994785 + MIRb SINE MIR 92 268 0 6 1018 732 200 72 39 chr11 56849754 56849962 -64993894 + B3 SINE B2 2 216 0 6 1018 368 299 139 0 chr11 56851549 56851686 -64992170 + MLT1A LTR MaLR 26 181 -193 6 1018 775 291 63 42 chr11 56851724 56852008 -64991848 + B4A SINE B4 1 290 -2 6 1018 355 190 20 20 chr11 56852044 56852146 -64991710 + GA-rich Low_complexity Low_complexity 3 104 0 6 1018 1585 35 0 15 chr11 56853215 56853418 -64990438 - L1Md_F3 LINE L1 -14 6570 6371 6 1018 347 299 45 7 chr11 56853498 56853653 -64990203 - L1M3 LINE L1 -1102 5038 4878 6 1018 351 0 0 0 chr11 56853654 56853693 -64990163 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1018 376 233 0 15 chr11 56853747 56854025 -64989831 + (TG)n Simple_repeat Simple_repeat 1 273 0 6 1018 459 237 5 0 chr11 56854042 56854452 -64989404 + (TG)n Simple_repeat Simple_repeat 1 412 0 6 1018 656 243 57 36 chr11 56854485 56854677 -64989179 - B3 SINE B2 -16 200 5 6 1018 297 272 115 18 chr11 56854701 56854866 -64988990 - L1M3 LINE L1 -1265 4878 4698 6 1018 854 259 68 29 chr11 56854982 56855260 -64988596 - B4A SINE B4 0 292 4 6 1018 433 193 8 116 chr11 56855278 56855407 -64988449 - L1M3 LINE L1 -1449 4691 4577 6 1018 930 263 102 85 chr11 56855409 56856007 -64987849 + L1MA7 LINE L1 5295 5902 -389 6 1018 988 204 71 0 chr11 56856108 56856304 -64987552 + ID_B1 SINE B4 3 212 -12 6 1018 363 96 0 0 chr11 56856304 56856356 -64987500 + (TATG)n Simple_repeat Simple_repeat 4 55 0 6 1018 408 281 64 14 chr11 56856375 56856516 -64987340 + RSINE1 SINE B4 4 151 -14 6 1018 451 224 85 58 chr11 56856579 56856756 -64987100 + L1MA7 LINE L1 6064 6244 -47 6 1018 498 277 15 0 chr11 56856781 56856825 -64987031 + ID SINE ID 37 82 -142 6 1018 373 273 36 18 chr11 56856825 56856937 -64986919 + PB1D10 SINE Alu 1 114 -3 6 1018 861 212 35 10 chr11 56856947 56857147 -64986709 + B3 SINE B2 11 215 -1 6 1018 700 243 57 0 chr11 56858927 56859104 -64984752 + ID_B1 SINE B4 4 190 -34 6 1018 287 25 25 0 chr11 56859104 56859144 -64984712 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1018 513 47 0 0 chr11 56859680 56859744 -64984112 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1018 414 255 113 0 chr11 56859754 56859860 -64983996 - B4 SINE B4 -14 278 161 6 1018 330 87 0 0 chr11 56860314 56860360 -64983496 + (ATG)n Simple_repeat Simple_repeat 1 46 0 6 1018 487 258 23 93 chr11 56861051 56861266 -64982590 + B3A SINE B2 15 215 -1 6 1018 402 308 50 6 chr11 56861466 56861626 -64982230 + ID_B1 SINE B4 2 168 -56 6 1018 213 209 0 0 chr11 56861637 56861680 -64982176 - MIRb SINE MIR -186 82 40 6 1018 503 204 0 10 chr11 56862201 56862300 -64981556 - MTD LTR MaLR -320 99 2 6 1018 760 301 83 25 chr11 56862319 56862595 -64981261 + B4 SINE B4 1 292 0 6 1018 311 126 44 33 chr11 56862662 56862752 -64981104 + (CATA)n Simple_repeat Simple_repeat 4 94 0 6 1018 239 317 24 32 chr11 56862826 56862950 -64980906 + MIR SINE MIR 19 141 -121 6 1018 1228 219 59 121 chr11 56863271 56863660 -64980196 - MTE2a LTR MaLR -14 365 1 6 1018 799 134 7 21 chr11 56864041 56864186 -64979670 - URR1B DNA MER1_type 0 225 83 6 1018 377 365 24 43 chr11 56864930 56865139 -64978717 + MER20 DNA MER1_type 1 205 -14 6 1018 253 245 60 20 chr11 56865750 56865850 -64978006 - RMER15 LTR ERVL -94 481 378 6 1018 230 239 13 66 chr11 56866184 56866260 -64977596 + MurSatRep1 Unknown Unknown 613 684 -1453 6 1018 418 302 0 23 chr11 56866718 56866847 -64977009 - RSINE1 SINE B4 -36 129 4 6 1018 218 241 121 44 chr11 56866957 56867048 -64976808 + MIRc SINE MIR 63 160 -102 6 1018 424 242 30 30 chr11 56867285 56867417 -64976439 - MER5A DNA MER1_type -4 185 54 6 1018 204 77 0 0 chr11 56867451 56867477 -64976379 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1018 585 182 14 7 chr11 56867477 56867621 -64976235 + (TA)n Simple_repeat Simple_repeat 1 145 0 6 1018 261 0 0 0 chr11 56867621 56867650 -64976206 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1018 639 261 48 18 chr11 56868685 56868853 -64975003 + ID_B1 SINE B4 28 200 -24 6 1018 210 37 0 0 chr11 56868869 56868896 -64974960 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1018 400 339 32 21 chr11 56870905 56871095 -64972761 + B4A SINE B4 5 196 -96 6 1018 363 44 0 0 chr11 56871175 56871220 -64972636 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1018 232 236 0 0 chr11 56871984 56872039 -64971817 - MLT2B4 LTR ERVL -62 494 440 6 1018 340 278 182 29 chr11 56872124 56872261 -64971595 - RSINE1 SINE B4 -4 161 4 6 1018 390 235 0 0 chr11 56872778 56872880 -64970976 + CT-rich Low_complexity Low_complexity 1 102 0 6 1018 766 282 121 4 chr11 56874228 56874477 -64969379 + B4 SINE B4 11 288 -4 6 1018 357 24 0 0 chr11 56874501 56874543 -64969313 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1018 580 184 11 28 chr11 56875286 56875465 -64968391 + (TATG)n Simple_repeat Simple_repeat 3 178 0 6 1018 538 310 13 6 chr11 56875465 56875624 -64968232 - B4 SINE B4 0 292 133 6 1018 306 305 12 0 chr11 56875641 56875723 -64968133 - B4 SINE B4 -207 85 3 6 1018 319 262 28 18 chr11 56876510 56876619 -64967237 + GA-rich Low_complexity Low_complexity 2 111 0 6 1018 360 133 0 0 chr11 56877318 56877378 -64966478 + (TCC)n Simple_repeat Simple_repeat 2 61 0 6 1018 433 216 0 0 chr11 56877401 56877475 -64966381 - ID4 SINE ID -9 74 1 6 1018 621 257 39 45 chr11 56878639 56878794 -64965062 - RSINE1 SINE B4 -8 157 4 6 1018 186 344 0 0 chr11 56879010 56879071 -64964785 - L2c LINE L2 0 3387 3327 6 1018 486 0 0 0 chr11 56879184 56879238 -64964618 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1018 524 276 0 16 chr11 56879585 56879714 -64964142 - PB1 SINE Alu 0 127 1 6 1018 231 282 0 40 chr11 56879654 56879728 -64964128 - B4A SINE B4 -148 144 74 6 1018 948 274 110 53 chr11 56879752 56879909 -64963947 - MTE2b LTR MaLR -4 375 193 6 1018 180 0 0 0 chr11 56879909 56879929 -64963927 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1018 948 274 110 53 chr11 56879929 56880126 -64963730 - MTE2b LTR MaLR -187 192 1 6 1018 1579 221 44 8 chr11 56880172 56880533 -64963323 + ORR1C1 LTR MaLR 1 374 -4 6 1018 249 222 0 0 chr11 56881513 56881567 -64962289 + MTEa LTR MaLR 3 56 -323 6 1018 677 293 57 40 chr11 56881782 56882081 -64961775 + MTEa LTR MaLR 69 372 -7 6 1018 485 83 12 0 chr11 56882491 56882575 -64961281 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1018 708 247 12 40 chr11 56882580 56882753 -64961103 - B3A SINE B2 -30 168 1 6 1018 540 265 168 0 chr11 56883025 56883210 -64960646 + B4 SINE B4 2 217 -75 6 1018 1631 185 87 22 chr11 56883270 56883640 -64960216 + MTC LTR MaLR 28 421 0 6 1018 191 360 50 19 chr11 56883822 56884059 -64959797 + L2c LINE L2 3049 3322 -65 6 1018 364 298 380 10 chr11 56884606 56884812 -64959044 + B4 SINE B4 7 288 -4 6 1018 581 250 7 27 chr11 56884913 56885061 -64958795 - RSINE1 SINE B4 -17 148 4 6 127 2208 69 0 17 chr11 56885135 56885431 -64958425 + L1Md_F2 LINE L1 6291 6581 -1 6 1019 280 320 38 28 chr11 56886668 56886774 -64957082 - ID_B1 SINE B4 -31 193 87 6 1019 318 241 177 0 chr11 56886978 56887057 -64956799 + RSINE1 SINE B4 3 95 -70 6 1019 248 365 54 71 chr11 56887090 56887458 -64956398 + ORR1D2 LTR MaLR 1 362 -8 6 1019 183 330 65 65 chr11 56887780 56887887 -64955969 - MIRb SINE MIR -23 245 139 6 1019 292 214 146 0 chr11 56888016 56888105 -64955751 - MLT1A1 LTR MaLR 0 408 307 6 1019 336 284 19 19 chr11 56889350 56889454 -64954402 - MLT1A1 LTR MaLR -6 402 299 6 1019 196 347 0 0 chr11 56889706 56889778 -64954078 + MIR SINE MIR 21 92 -116 7 1019 630 260 81 0 chr11 56890415 56890588 -64953268 - MER58A DNA MER1_type 0 224 38 7 1019 241 260 104 55 chr11 56891482 56891645 -64952211 - Lx8 LINE L1 0 7473 7303 7 1019 463 259 106 0 chr11 56891664 56891834 -64952022 - Lx8 LINE L1 -361 7112 6925 7 1019 288 111 0 0 chr11 56892253 56892298 -64951558 + (TTG)n Simple_repeat Simple_repeat 3 47 0 7 1019 233 258 16 0 chr11 56892314 56892376 -64951480 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 7 1019 1495 198 90 12 chr11 56892438 56892572 -64951284 + ORR1B2 LTR MaLR 1 155 -212 7 1019 1068 103 0 0 chr11 56892572 56892728 -64951128 + (TC)n Simple_repeat Simple_repeat 2 157 0 7 1019 1495 198 90 12 chr11 56892728 56892926 -64950930 + ORR1B2 LTR MaLR 156 358 -9 7 1019 819 245 78 0 chr11 56892923 56893115 -64950741 - B4 SINE B4 -77 215 9 7 1019 731 230 12 36 chr11 56893432 56893599 -64950257 + B3A SINE B2 1 163 -35 7 1019 498 83 0 0 chr11 56893599 56893671 -64950185 + (CATA)n Simple_repeat Simple_repeat 4 75 0 7 1019 299 265 53 96 chr11 56893671 56893691 -64950165 + B2_Mm1a SINE B2 162 180 -13 7 1019 1390 249 34 9 chr11 56893958 56894307 -64949549 + MTEb LTR MaLR 1 358 -21 7 1019 429 342 34 19 chr11 56894600 56894806 -64949050 + B4A SINE B4 32 240 -52 7 1019 532 274 85 0 chr11 56895631 56895784 -64948072 + ID_B1 SINE B4 2 167 -57 7 1019 260 277 75 68 chr11 56895812 56895825 -64948031 + B1_Mur4 SINE Alu 3 145 0 7 1019 447 242 39 39 chr11 56895825 56895954 -64947902 + ID_B1 SINE B4 95 223 -1 7 1019 195 42 0 0 chr11 56895959 56895983 -64947873 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 7 1019 203 371 11 91 chr11 56896142 56896219 -64947637 - MER5A DNA MER1_type -28 161 91 7 1019 1259 249 26 44 chr11 56896219 56896602 -64947254 - MTEb LTR MaLR 0 379 4 7 1019 203 371 11 91 chr11 56896602 56896699 -64947157 - MER5A DNA MER1_type -99 90 2 7 1019 992 178 4 4 chr11 56897754 56898010 -64945846 + GA-rich Low_complexity Low_complexity 1 256 0 7 1019 934 285 57 18 chr11 56898128 56898407 -64945449 + B4 SINE B4 3 292 0 7 1019 357 174 0 0 chr11 56898408 56898477 -64945379 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1019 1087 79 33 0 chr11 56898818 56898970 -64944886 - B2_Mm2 SINE B2 -38 157 1 7 1019 186 43 0 0 chr11 56899001 56899024 -64944832 + (TA)n Simple_repeat Simple_repeat 1 23 0 7 1019 857 248 97 43 chr11 56899025 56899303 -64944553 - Lx8 LINE L1 -35 7438 7146 7 1019 620 291 15 35 chr11 56899299 56899502 -64944354 - Lx8 LINE L1 -859 6614 6416 7 1019 1363 268 92 55 chr11 56899548 56900165 -64943691 - Lx7 LINE L1 -1468 6228 5589 7 1019 286 294 0 0 chr11 56900470 56900555 -64943301 - MER5A1 DNA MER1_type -5 161 77 7 1019 748 270 54 57 chr11 56900670 56900949 -64942907 - B4 SINE B4 -13 279 2 7 1019 672 252 24 36 chr11 56901996 56902161 -64941695 - B3A SINE B2 -30 168 6 7 1019 314 222 29 118 chr11 56902297 56902399 -64941457 + PB1D7 SINE Alu 28 120 0 7 1019 596 295 21 79 chr11 56902543 56902779 -64941077 + B4 SINE B4 1 217 -75 7 1019 375 60 0 0 chr11 56902779 56902829 -64941027 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 7 1019 596 295 21 79 chr11 56902829 56902872 -64940984 + B4 SINE B4 218 263 -29 7 1019 491 31 15 0 chr11 56904038 56904103 -64939753 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1019 375 274 97 0 chr11 56904528 56904652 -64939204 - ID_B1 SINE B4 -7 217 82 7 1019 349 212 120 34 chr11 56905152 56905269 -64938587 - MIR SINE MIR -123 139 13 7 1019 526 188 10 10 chr11 56905633 56905735 -64938121 - Lx5 LINE L1 -222 6828 6727 7 1019 1510 177 113 21 chr11 56906336 56906671 -64937185 - ORR1D2 LTR MaLR -2 368 3 7 1019 188 362 79 20 chr11 56907077 56907229 -64936627 + MIRb SINE MIR 75 235 -33 7 1019 481 191 104 9 chr11 56907489 56907595 -64936261 + B3A SINE B2 2 117 -81 7 1019 602 212 40 33 chr11 56909274 56909425 -64934431 - ID_B1 SINE B4 -4 220 69 7 1019 210 91 0 0 chr11 56909734 56909767 -64934089 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1019 440 281 199 53 chr11 56909823 56910105 -64933751 - MLT1G3 LTR MaLR -7 588 266 7 1019 22 0 0 0 chr11 56910633 56910655 -64933201 + AT_rich Low_complexity Low_complexity 1 22 0 7 1019 24 0 0 0 chr11 56910748 56910772 -64933084 + AT_rich Low_complexity Low_complexity 1 24 0 7 1019 534 301 0 0 chr11 56910801 56910924 -64932932 - RSINE1 SINE B4 -40 125 3 7 1019 749 343 116 13 chr11 56911042 56911585 -64932271 - L1MB7 LINE L1 -152 6032 5434 7 1019 285 248 83 30 chr11 56911792 56911925 -64931931 - L1MB7 LINE L1 -854 5292 5153 7 1019 228 163 0 0 chr11 56911975 56912018 -64931838 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 7 1019 321 26 0 0 chr11 56912068 56912106 -64931750 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1019 1076 218 167 42 chr11 56912603 56912938 -64930918 - MTEb LTR MaLR 0 379 3 7 1019 520 289 8 0 chr11 56913153 56913274 -64930582 + MER5A1 DNA MER1_type 45 166 0 7 1019 1079 84 7 0 chr11 56915953 56916096 -64927760 + B1_Mm SINE Alu 2 145 -2 7 1019 390 225 153 0 chr11 56916591 56916702 -64927154 - B1F SINE Alu -20 129 2 7 1019 569 262 96 29 chr11 56916740 56916948 -64926908 - ID_B1 SINE B4 -1 223 2 7 1019 1129 88 0 0 chr11 56918177 56918324 -64925532 + B1_Mus1 SINE Alu 2 148 0 7 1019 189 255 17 52 chr11 56919191 56919249 -64924607 + L3 LINE CR1 4431 4486 -3 7 1019 480 147 14 29 chr11 56920067 56920207 -64923649 + CT-rich Low_complexity Low_complexity 1 138 0 7 1019 720 280 26 16 chr11 56920230 56920422 -64923434 - ID_B1 SINE B4 -30 194 1 7 1019 21 0 0 0 chr11 56920535 56920556 -64923300 + AT_rich Low_complexity Low_complexity 1 21 0 7 1019 444 37 0 0 chr11 56920848 56920902 -64922954 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 7 1019 200 322 0 33 chr11 56920902 56920992 -64922864 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 7 1019 232 302 0 0 chr11 56920903 56920966 -64922890 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 7 1019 289 296 91 10 chr11 56921219 56921318 -64922538 + RSINE1 SINE B4 25 131 -34 7 1019 397 265 39 19 chr11 56921393 56921497 -64922359 + PB1D10 SINE Alu 5 110 -7 7 1019 1146 82 0 0 chr11 56921757 56921904 -64921952 + B1_Mus1 SINE Alu 2 148 0 7 1019 591 15 0 0 chr11 56922465 56922533 -64921323 + (TTA)n Simple_repeat Simple_repeat 2 69 0 7 1019 766 303 5 14 chr11 56922535 56922749 -64921107 - ID_B1 SINE B4 -12 212 1 7 1019 3344 58 17 2 chr11 56922841 56923259 -64920597 - L1_Mus1 LINE L1 0 6567 6144 7 1019 2955 53 60 13 chr11 56923475 56923857 -64919999 + MTB LTR MaLR 1 400 0 7 1019 987 268 47 42 chr11 56924114 56924473 -64919383 + Lx8 LINE L1 7113 7473 0 7 1019 333 0 0 0 chr11 56924652 56924689 -64919167 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1019 378 0 0 0 chr11 56925003 56925045 -64918811 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1019 1255 271 91 3 chr11 56925182 56925545 -64918311 + MTD LTR MaLR 18 412 -7 7 1019 402 282 0 47 chr11 56925563 56925734 -64918122 + HAL1-2a_MD LINE L1 2345 2507 -517 7 1019 339 289 116 0 chr11 56927686 56927807 -64916049 - MLT1C LTR MaLR -263 204 70 7 1019 758 205 13 19 chr11 56928315 56928474 -64915382 + B3 SINE B2 2 159 -57 7 1019 234 353 14 68 chr11 56929696 56929842 -64914014 - MER63A DNA AcHobo -56 154 17 7 1019 198 330 41 33 chr11 56930498 56930620 -64913236 - L2b LINE L2 -18 3357 3235 7 1019 203 363 62 0 chr11 56930773 56930886 -64912970 - L2b LINE L2 -237 3138 3019 7 1019 802 260 158 11 chr11 56930986 56931202 -64912654 - MTEb LTR MaLR -67 312 58 7 1019 459 0 0 0 chr11 56931202 56931253 -64912603 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1019 802 260 158 11 chr11 56931253 56931308 -64912548 - MTEb LTR MaLR -322 57 1 7 1019 1573 152 136 58 chr11 56932343 56932544 -64911312 + RMER17C LTR ERVK 3 187 -223 7 1019 962 0 21 28 chr11 56932544 56932686 -64911170 + (TCTCC)n Simple_repeat Simple_repeat 2 142 0 7 1019 405 0 0 0 chr11 56932686 56932731 -64911125 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1019 1573 152 136 58 chr11 56932731 56932904 -64910952 + RMER17C LTR ERVK 188 406 -4 7 1019 244 122 24 0 chr11 56933008 56933049 -64910807 - ID_B1 SINE B4 -6 218 177 7 1019 531 128 0 0 chr11 56933055 56933164 -64910692 + (TG)n Simple_repeat Simple_repeat 2 110 0 7 1019 855 243 11 0 chr11 56933979 56934156 -64909700 - B3A SINE B2 -18 180 2 7 1019 583 261 46 0 chr11 56934434 56934587 -64909269 + RSINE1 SINE B4 6 165 0 7 1019 423 0 0 0 chr11 56934593 56934640 -64909216 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1019 306 0 0 0 chr11 56934640 56934673 -64909183 + (GA)n Simple_repeat Simple_repeat 2 35 0 7 1019 255 250 0 93 chr11 56934675 56934750 -64909106 + B4 SINE B4 2 69 -223 7 1019 315 314 24 54 chr11 56934857 56935025 -64908831 - RSINE1 SINE B4 -1 164 2 7 1019 21 0 0 0 chr11 56935049 56935070 -64908786 + AT_rich Low_complexity Low_complexity 1 21 0 7 1019 710 182 73 0 chr11 56935375 56935512 -64908344 + B3A SINE B2 4 150 -48 7 1019 450 125 0 0 chr11 56935844 56935924 -64907932 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1019 315 233 152 19 chr11 56936346 56936451 -64907405 + MTD LTR MaLR 5 123 -296 7 1019 266 219 98 0 chr11 56936441 56936523 -64907333 + MLT2B2 LTR ERVL 22 111 -404 7 1019 666 169 0 0 chr11 56936569 56936735 -64907121 + CT-rich Low_complexity Low_complexity 2 167 0 7 1019 272 170 0 0 chr11 56936736 56936789 -64907067 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 7 1019 226 224 0 20 chr11 56936913 56936963 -64906893 + MTD LTR MaLR 314 362 -17 7 1019 447 224 0 0 chr11 56937167 56937274 -64906582 + GA-rich Low_complexity Low_complexity 1 107 0 7 1019 923 236 150 10 chr11 56937316 56937629 -64906227 - ORR1D2 LTR MaLR -13 357 1 7 1019 1124 54 0 7 chr11 56938401 56938550 -64905306 + (GAA)n Simple_repeat Simple_repeat 1 148 0 7 1019 527 254 37 15 chr11 56938690 56938826 -64905030 + B1F1 SINE Alu 2 140 -9 8 1019 206 245 57 25 chr11 56941381 56941540 -64902316 + (TATATG)n Simple_repeat Simple_repeat 2 165 0 8 1019 339 222 46 17 chr11 56941507 56941681 -64902175 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1019 378 0 0 0 chr11 56941967 56942009 -64901847 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1019 289 324 0 27 chr11 56944156 56944267 -64899589 + CT-rich Low_complexity Low_complexity 3 110 0 8 1019 341 335 67 26 chr11 56944461 56944654 -64899202 + MIRb SINE MIR 66 266 -2 8 1019 234 0 0 0 chr11 56944659 56944685 -64899171 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 1019 602 49 12 0 chr11 56944685 56944767 -64899089 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 8 1019 582 41 0 0 chr11 56945109 56945182 -64898674 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 1019 1515 28 0 0 chr11 56945182 56945397 -64898459 + (TG)n Simple_repeat Simple_repeat 1 215 0 8 1019 705 275 52 37 chr11 56945423 56945655 -64898201 - B4 SINE B4 -51 241 5 8 1019 545 162 337 36 chr11 56945661 56945827 -64898029 - B3 SINE B2 0 216 1 8 1019 237 232 0 55 chr11 56945841 56945914 -64897942 + Charlie8 DNA MER1_type 71 139 -2289 8 1019 359 360 65 26 chr11 56946136 56946367 -64897489 - L1ME3B LINE L1 -267 5973 5734 8 1019 796 265 29 21 chr11 56946443 56946784 -64897072 - L1ME3B LINE L1 -560 5613 5266 8 1019 621 318 57 39 chr11 56946904 56947205 -64896651 - B4 SINE B4 -16 276 3 8 1019 588 290 134 37 chr11 56947369 56947720 -64896136 - L1ME3B LINE L1 -1128 5018 4634 8 1019 424 278 0 18 chr11 56947747 56947857 -64895999 + PB1D10 SINE Alu 10 117 0 8 1019 513 289 7 34 chr11 56948619 56948766 -64895090 - RSINE1 SINE B4 -21 144 2 8 1019 457 352 22 55 chr11 56948778 56949049 -64894807 - L1ME3B LINE L1 -4446 1796 1535 8 1019 703 301 146 4 chr11 56949669 56949916 -64893940 + B4A SINE B4 3 284 -8 8 1019 293 359 35 39 chr11 56950084 56950256 -64893600 + MIR SINE MIR 56 231 -37 8 1019 396 299 175 0 chr11 56950434 56950571 -64893285 - RSINE1 SINE B4 -1 164 4 8 1019 278 255 54 78 chr11 56950667 56950779 -64893077 - MER5A DNA MER1_type -45 144 35 8 1019 330 268 0 0 chr11 56951554 56951625 -64892231 + PB1D10 SINE Alu 46 116 -1 8 1019 1079 260 11 21 chr11 56951693 56951917 -64891939 + B4 SINE B4 2 223 -69 8 1019 450 0 0 0 chr11 56951917 56951967 -64891889 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 8 1019 1079 260 11 21 chr11 56951967 56952025 -64891831 + B4 SINE B4 224 281 -11 8 1019 348 243 0 0 chr11 56952157 56952231 -64891625 - ID4_ SINE ID -8 75 2 8 1019 653 219 120 32 chr11 56954419 56954759 -64889097 - Lx2B LINE L1 -38 7020 6528 8 1019 369 24 0 0 chr11 56955062 56955103 -64888753 - L1Md_F3 LINE L1 -405 6179 6139 8 1019 1895 43 0 8 chr11 56955112 56955349 -64888507 + L1Md_F3 LINE L1 6350 6584 0 8 1019 545 250 0 8 chr11 56955349 56955456 -64888400 + B3A SINE B2 27 133 -65 8 1019 414 0 0 0 chr11 56955457 56955503 -64888353 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1019 227 308 128 57 chr11 56955790 56955931 -64887925 - MIRb SINE MIR -68 200 50 8 1019 1355 280 36 48 chr11 56955932 56956408 -64887448 - MT2A LTR ERVL -1 532 63 8 1019 492 32 0 0 chr11 56956712 56956774 -64887082 + (TC)n Simple_repeat Simple_repeat 2 63 0 8 1019 348 24 0 0 chr11 56956774 56956814 -64887042 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1019 195 297 15 15 chr11 56956898 56956963 -64886893 + L2c LINE L2 3323 3387 0 8 1019 1549 259 37 3 chr11 56958750 56959099 -64884757 + MTE2b LTR MaLR 1 361 -18 8 1019 1335 250 55 38 chr11 56960504 56960870 -64882986 + MTE2b LTR MaLR 8 379 0 8 1019 1591 230 103 11 chr11 56961914 56962283 -64881573 - MTD LTR MaLR -14 405 3 8 1019 625 318 88 40 chr11 56962369 56962697 -64881159 + MER2 DNA MER2_type 1 344 -1 8 1019 489 314 52 29 chr11 56963409 56963583 -64880273 + MER5A DNA MER1_type 2 179 -10 8 1019 841 304 10 92 chr11 56963581 56963885 -64879971 - B4 SINE B4 0 292 14 8 1019 754 270 42 5 chr11 56964016 56964206 -64879650 - B3A SINE B2 -1 197 1 8 1019 807 262 15 20 chr11 56964385 56964584 -64879272 - B3A SINE B2 0 198 1 8 1019 194 289 185 37 chr11 56964881 56964989 -64878867 - L2b LINE L2 -8 3367 3244 8 1019 269 402 0 9 chr11 56965112 56965225 -64878631 - MIRc SINE MIR -133 135 24 8 1019 1102 246 73 123 chr11 56965800 56966123 -64877733 - MTE2a LTR MaLR 0 379 57 8 1019 933 140 41 116 chr11 56966123 56966365 -64877491 - URR1B DNA MER1_type 0 225 2 8 1019 1102 246 73 123 chr11 56966365 56966440 -64877416 - MTE2a LTR MaLR -323 56 1 8 1019 1274 261 125 11 chr11 56967133 56967494 -64876362 + MTD LTR MaLR 18 419 0 8 1019 235 412 49 22 chr11 56968713 56968939 -64874917 - MIRb SINE MIR -18 250 19 8 1019 936 276 27 58 chr11 56971398 56971656 -64872200 + B4 SINE B4 5 254 -38 8 1019 531 0 0 0 chr11 56971665 56971724 -64872132 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1019 1088 81 0 20 chr11 56974239 56974390 -64869466 - B1_Mus1 SINE Alu 0 148 1 8 1019 22 35 0 0 chr11 56974413 56974442 -64869414 + AT_rich Low_complexity Low_complexity 1 29 0 8 1019 3110 62 13 0 chr11 56974461 56974846 -64869010 - L1_Mus1 LINE L1 -1 6566 6177 8 1019 3640 55 0 0 chr11 56974846 56975284 -64868572 + L1_Mus1 LINE L1 5749 6186 -381 8 1019 444 285 95 0 chr11 56975598 56975756 -64868100 - RMER15 LTR ERVL 0 575 403 8 1019 910 256 109 115 chr11 56975757 56976123 -64867733 + MTE2a LTR MaLR 1 364 -15 8 1019 376 294 102 102 chr11 56976074 56976271 -64867585 - RMER15 LTR ERVL -104 471 275 8 1019 324 372 65 0 chr11 56976786 56976939 -64866917 + Tigger13a DNA MER2_type 608 770 -1 8 1019 312 255 255 11 chr11 56977382 56977561 -64866295 - MER2 DNA MER2_type -27 318 96 8 1019 489 278 0 0 chr11 56977699 56977814 -64866042 - PB1D10 SINE Alu 0 117 3 8 1019 273 57 0 0 chr11 56977843 56977878 -64865978 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1019 910 294 30 19 chr11 56977879 56978146 -64865710 - B4A SINE B4 -22 270 1 8 1019 530 294 25 12 chr11 56978175 56978337 -64865519 + RSINE1 SINE B4 2 165 0 8 1019 252 0 0 0 chr11 56978337 56978365 -64865491 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1019 355 257 0 0 chr11 56978369 56978439 -64865417 + Lx8 LINE L1 6546 6615 -858 8 1019 335 309 0 0 chr11 56978457 56978538 -64865318 + Lx8 LINE L1 6823 6903 -570 8 1019 2023 156 73 3 chr11 56978550 56978922 -64864934 - MTC LTR MaLR -23 398 1 8 1019 1072 203 45 20 chr11 56978922 56979168 -64864688 + Lx8 LINE L1 6900 7151 -322 8 1019 746 243 15 51 chr11 56980712 56980907 -64862949 - ID_B1 SINE B4 -18 206 19 8 1019 195 139 0 0 chr11 56980959 56980995 -64862861 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1019 808 249 153 33 chr11 56982799 56983139 -64860717 + MTD LTR MaLR 1 419 0 8 1019 223 176 59 0 chr11 56983196 56983247 -64860609 + MIRb SINE MIR 187 240 -28 8 1019 336 317 99 15 chr11 56984133 56984356 -64859500 + B4A SINE B4 1 247 -45 8 1019 285 109 0 0 chr11 56984373 56984419 -64859437 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1019 369 0 0 0 chr11 56985522 56985563 -64858293 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1019 213 261 0 104 chr11 56985565 56985642 -64858214 - ID4 SINE ID -12 71 3 8 1019 342 324 60 33 chr11 56986407 56986557 -64857299 + HAL1-3A_ME LINE L1 2284 2437 -421 8 1019 266 247 27 0 chr11 56986558 56986631 -64857225 + GA-rich Low_complexity Low_complexity 1 75 0 8 1019 1196 55 14 0 chr11 56988269 56988414 -64855442 - B1_Mus1 SINE Alu 0 148 2 8 1019 528 56 0 0 chr11 56988454 56988526 -64855330 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1019 382 200 13 13 chr11 56988546 56988703 -64855153 + (TCTCTG)n Simple_repeat Simple_repeat 2 158 0 8 1019 513 0 0 0 chr11 56988750 56988807 -64855049 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1019 949 292 44 26 chr11 56988814 56989085 -64854771 - B4A SINE B4 -12 280 5 8 1019 320 0 25 0 chr11 56989488 56989528 -64854328 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 8 1019 918 184 0 0 chr11 56989529 56989708 -64854148 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 8 1019 564 77 0 0 chr11 56989710 56989788 -64854068 + (GGGAGA)n Simple_repeat Simple_repeat 6 83 0 8 1019 263 324 73 63 chr11 56990525 56990716 -64853140 - MIR3 SINE MIR -5 203 11 8 1019 305 218 12 37 chr11 56990834 56990915 -64852941 + CT-rich Low_complexity Low_complexity 2 80 0 8 1019 308 288 107 67 chr11 56991159 56991308 -64852548 - HAL1-3A_ME LINE L1 -412 2446 2292 8 1019 288 239 30 0 chr11 56991910 56991977 -64851879 - L2b LINE L2 -4 3371 3303 8 1019 205 152 42 42 chr11 56992511 56992559 -64851297 + (TATG)n Simple_repeat Simple_repeat 4 51 0 8 1019 1501 119 41 4 chr11 56992560 56992805 -64851051 - RLTR11A LTR ERVK 0 528 275 8 1019 7772 79 16 8 chr11 56992808 56994366 -64849490 - L1_Mus1 LINE L1 0 6567 4997 8 1019 10002 108 4 1 chr11 56994364 56995834 -64848022 + L1_Mm LINE L1 2468 3942 -1941 8 1019 537 276 45 45 chr11 56995835 56995968 -64847888 + ETnERV2-int LTR ERVK 7070 7202 -204 8 1019 2331 80 0 0 chr11 56996354 56996666 -64847190 + L1_Mm LINE L1 3930 4241 -1642 8 1019 1603 156 43 11 chr11 56996666 56996945 -64846911 - RLTR11A LTR ERVK -240 288 1 8 1019 250 246 0 0 chr11 56997529 56997586 -64846270 + Lx8 LINE L1 7416 7472 -1 8 1019 327 85 0 0 chr11 56998195 56998242 -64845614 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1019 467 369 65 38 chr11 56998255 56998517 -64845339 - B4 SINE B4 -20 272 4 8 1019 632 306 38 41 chr11 56998973 56999266 -64844590 - B4A SINE B4 0 292 1 8 1019 373 284 11 56 chr11 57000117 57000296 -64843560 + HAL1-2a_MD LINE L1 2345 2515 -509 1 1019 418 299 13 26 chr11 57000302 57000453 -64843403 + (CACCAT)n Simple_repeat Simple_repeat 4 152 0 2 1019 230 261 141 49 chr11 57001101 57001241 -64842615 + MIRc SINE MIR 20 165 -103 3 1019 361 327 90 109 chr11 57001497 57001961 -64841895 + MLT1D LTR MaLR 1 442 -25 4 1019 181 280 80 0 chr11 57002069 57002119 -64841737 - MIRm SINE MIR -9 267 214 5 1019 1188 272 11 41 chr11 57002215 57002583 -64841273 - ORR1E LTR MaLR -1 358 2 6 1019 181 244 49 0 chr11 57002649 57002690 -64841166 - MIRb SINE MIR -71 197 155 7 1019 25 0 0 0 chr11 57002831 57002856 -64841000 + AT_rich Low_complexity Low_complexity 1 25 0 8 1019 241 321 55 9 chr11 57004415 57004525 -64839331 + MIRb SINE MIR 125 239 -29 9 1019 285 29 0 0 chr11 57004879 57004913 -64838943 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1019 1112 84 0 0 chr11 57004948 57005090 -64838766 + B1_Mus1 SINE Alu 1 142 -6 1 1019 450 0 0 0 chr11 57005092 57005142 -64838714 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1019 798 250 31 0 chr11 57005200 57005396 -64838460 + B3 SINE B2 2 203 -13 1 1019 662 294 62 39 chr11 57005432 57005690 -64838166 + B4 SINE B4 5 268 -24 1 1019 306 138 0 0 chr11 57005714 57005772 -64838084 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1019 1575 319 86 48 chr11 57007141 57008623 -64835233 + L1MA4 LINE L1 2140 3678 -2465 1 1019 978 291 60 26 chr11 57008705 57009054 -64834802 + Lx8 LINE L1 7113 7473 0 1 1019 1639 276 33 25 chr11 57009066 57009695 -64834161 + L1MA4 LINE L1 3731 4364 -1779 1 1019 1168 221 36 84 chr11 57009738 57010116 -64833740 - ORR1E LTR MaLR -1 378 1 1 1019 1010 300 83 45 chr11 57010116 57011071 -64832785 + L1MA4 LINE L1 4406 5470 -827 1 1019 253 358 179 0 chr11 57011074 57011208 -64832648 + RSINE1 SINE B4 6 163 -2 1 1019 710 193 13 52 chr11 57011286 57011439 -64832417 + B1_Mur1 SINE Alu 2 148 -1 2 1019 497 281 138 13 chr11 57011536 57011857 -64831999 + L1MA4 LINE L1 5576 5925 -375 1 1019 261 221 763 24 chr11 57011881 57012004 -64831852 + B3 SINE B2 1 214 -2 2 1019 788 294 43 11 chr11 57013531 57013810 -64830046 + B4A SINE B4 1 288 -4 2 1019 788 254 76 78 chr11 57014838 57015245 -64828611 - MTE2a LTR MaLR -14 405 6 2 1019 343 319 9 57 chr11 57015909 57016138 -64827718 - L1MB8 LINE L1 -2 6176 5959 2 1019 293 264 46 19 chr11 57016148 57016256 -64827600 - L1MB8 LINE L1 -355 5823 5713 2 1020 558 0 0 0 chr11 57016463 57016525 -64827331 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2 1020 1157 52 0 0 chr11 57016525 57016661 -64827195 - B1_Mus2 SINE Alu -10 137 2 2 1020 317 30 87 29 chr11 57016807 57016876 -64826980 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 2 1020 312 174 70 0 chr11 57018381 57018467 -64825389 - Lx9 LINE L1 -1 7643 7552 2 1020 4812 176 103 0 chr11 57018482 57019340 -64824516 - Lx9 LINE L1 -174 7470 6525 2 1020 292 250 36 71 chr11 57019576 57019688 -64824168 - L1MB8 LINE L1 -16 6162 6055 2 1020 771 290 36 57 chr11 57019700 57020033 -64823823 - Lx8 LINE L1 0 7473 7148 3 1020 619 270 79 5 chr11 57020023 57020213 -64823643 - Lx8 LINE L1 -602 6871 6668 3 1020 473 333 14 24 chr11 57021051 57021260 -64822596 + MIRb SINE MIR 48 254 -14 3 1020 189 107 0 0 chr11 57021285 57021313 -64822543 + (CAT)n Simple_repeat Simple_repeat 3 30 0 3 1020 1962 144 65 87 chr11 57023501 57023904 -64819952 + ORR1B1 LTR MaLR 1 394 0 3 1020 194 347 28 22 chr11 57024449 57024629 -64819227 - L3 LINE CR1 -269 4220 4040 3 1020 503 220 0 0 chr11 57024984 57025075 -64818781 + B4 SINE B4 2 92 -200 3 1020 537 250 17 0 chr11 57026674 57026794 -64817062 - ID_B1 SINE B4 -16 208 87 3 1020 342 268 18 18 chr11 57029253 57029367 -64814489 + L2a LINE L2 2933 3046 -373 3 1020 205 288 0 17 chr11 57029542 57029602 -64814254 + L2a LINE L2 3272 3330 -96 3 1020 314 311 24 40 chr11 57030322 57030446 -64813410 + RSINE1 SINE B4 3 124 -41 3 1020 405 39 0 0 chr11 57030446 57030497 -64813359 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1020 898 263 98 43 chr11 57030540 57030930 -64812926 + Lx8 LINE L1 7040 7473 0 4 1020 334 326 87 20 chr11 57031569 57031719 -64812137 - MLT1J LTR MaLR -102 410 251 4 1020 231 317 47 110 chr11 57031731 57032032 -64811824 - ORR1E LTR MaLR -11 348 67 4 1020 1193 217 73 7 chr11 57032253 57032527 -64811329 + B4A SINE B4 1 292 0 4 1020 563 60 12 0 chr11 57032550 57032634 -64811222 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 1020 270 0 0 0 chr11 57033440 57033470 -64810386 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1020 348 278 0 0 chr11 57033476 57033566 -64810290 + ID_B1 SINE B4 102 191 -33 4 1020 306 250 0 86 chr11 57033566 57033581 -64810275 + PB1D10 SINE Alu 21 116 -1 4 1020 1024 259 17 0 chr11 57033587 57033826 -64810030 + B4A SINE B4 1 243 -49 4 1020 879 37 0 0 chr11 57033854 57033961 -64809895 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1020 757 314 50 18 chr11 57035001 57035280 -64808576 + B4A SINE B4 3 290 -2 5 1020 218 328 0 0 chr11 57036684 57036742 -64807114 + PB1D10 SINE Alu 31 88 -29 5 1020 218 300 83 53 chr11 57037104 57037273 -64806583 - MIR3 SINE MIR 0 208 35 5 1020 1896 279 32 16 chr11 57038515 57039061 -64804795 - Lx5 LINE L1 -2 7056 6478 5 1020 483 171 108 25 chr11 57039944 57040064 -64803792 - ORR1D2 LTR MaLR -2 368 239 5 1020 638 209 0 23 chr11 57040062 57040194 -64803662 - ORR1D2 LTR MaLR -241 129 1 5 1020 321 109 0 0 chr11 57040448 57040503 -64803353 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1020 216 0 0 0 chr11 57041415 57041439 -64802417 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1020 301 306 0 39 chr11 57042199 57042301 -64801555 + ID_B1 SINE B4 121 218 -6 5 1020 270 253 43 11 chr11 57042643 57042735 -64801121 + MIRm SINE MIR 60 154 -122 5 1020 380 264 147 61 chr11 57044235 57044433 -64799423 - MLT1E2 LTR MaLR -411 216 2 5 1020 237 284 0 50 chr11 57045173 57045273 -64798583 + PB1D10 SINE Alu 2 96 -21 6 1020 281 294 65 40 chr11 57045414 57045538 -64798318 + MIR3 SINE MIR 65 191 -17 6 1020 319 268 117 0 chr11 57045934 57046054 -64797802 + MIRb SINE MIR 22 149 -59 6 1020 326 306 10 0 chr11 57046054 57046152 -64797704 + PB1D10 SINE Alu 14 112 -5 6 1020 272 275 14 0 chr11 57046152 57046221 -64797635 + GA-rich Low_complexity Low_complexity 1 70 0 6 1020 291 307 98 10 chr11 57048873 57048975 -64794881 + B4A SINE B4 5 115 -177 6 1020 670 69 20 0 chr11 57049347 57049448 -64794408 + (CA)n Simple_repeat Simple_repeat 1 103 0 6 1020 249 146 0 0 chr11 57049461 57049509 -64794347 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1020 275 240 104 19 chr11 57050602 57050708 -64793148 + PB1D10 SINE Alu 1 115 -2 6 1020 452 18 0 17 chr11 57050869 57050927 -64792929 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1020 852 199 12 0 chr11 57051026 57051187 -64792669 + B3 SINE B2 47 209 -7 7 1020 485 306 129 0 chr11 57052817 57053010 -64790846 + ID_B1 SINE B4 1 218 -6 7 1020 206 317 61 45 chr11 57054006 57054138 -64789718 - MIRc SINE MIR -57 211 78 7 1020 184 331 109 31 chr11 57054357 57054485 -64789371 + MIRc SINE MIR 17 154 -114 7 1020 267 257 0 14 chr11 57055099 57055170 -64788686 - MLT1K LTR MaLR -4 591 522 7 1020 187 343 0 0 chr11 57055548 57055618 -64788238 + L3 LINE CR1 4280 4349 -140 7 1020 880 247 35 56 chr11 57055734 57056021 -64787835 + B4A SINE B4 1 281 -11 7 1020 186 43 0 0 chr11 57056033 57056056 -64787800 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1020 366 85 0 0 chr11 57056056 57056114 -64787742 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1020 186 71 0 0 chr11 57056131 57056159 -64787697 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1020 1137 263 34 8 chr11 57056707 57056971 -64786885 + B4 SINE B4 2 272 -20 8 1020 477 0 0 0 chr11 57056972 57057025 -64786831 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1020 191 264 198 0 chr11 57057233 57057339 -64786517 - MIR SINE MIR -4 258 132 8 1020 28 48 0 0 chr11 57057384 57057426 -64786430 + AT_rich Low_complexity Low_complexity 1 42 0 8 1020 206 283 0 8 chr11 57057426 57057502 -64786354 + MIR SINE MIR 65 138 -130 8 1020 1973 108 50 44 chr11 57058876 57059197 -64784659 + ORR1A2 LTR MaLR 5 327 0 8 1020 1542 270 54 16 chr11 57059714 57060102 -64783754 - Lx6 LINE L1 -111 7349 6947 8 1020 642 291 39 0 chr11 57060266 57060472 -64783384 + ID_B1 SINE B4 4 217 -7 8 1020 189 308 0 0 chr11 57061420 57061472 -64782384 - L2a LINE L2 -96 3330 3279 8 1020 583 286 35 46 chr11 57061481 57061521 -64782335 + ID_B1 SINE B4 43 173 -119 8 1020 745 218 7 7 chr11 57061521 57061664 -64782192 + B1F1 SINE Alu 7 149 0 9 1020 583 286 35 46 chr11 57061664 57061684 -64782172 + ID_B1 SINE B4 174 246 -46 8 1020 1032 244 81 15 chr11 57061684 57061955 -64781901 + B4A SINE B4 1 289 -3 9 1020 251 304 56 121 chr11 57061955 57062003 -64781853 + B4A SINE B4 247 291 -1 8 1020 410 361 12 0 chr11 57062080 57062246 -64781610 + (CA)n Simple_repeat Simple_repeat 2 169 0 9 1020 310 374 52 52 chr11 57062466 57062754 -64781102 - L2a LINE L2 -436 2983 2696 8 1020 1369 240 43 16 chr11 57063020 57063389 -64780467 + MTE2a LTR MaLR 1 379 0 9 1020 550 214 43 0 chr11 57065853 57065970 -64777886 - MTEa LTR MaLR -8 371 250 9 1020 23 0 0 0 chr11 57066294 57066317 -64777539 + AT_rich Low_complexity Low_complexity 1 23 0 9 1020 265 278 82 27 chr11 57067281 57067425 -64776431 + MIR SINE MIR 29 173 -89 9 1020 1460 223 96 16 chr11 57067435 57067810 -64776046 - MTD LTR MaLR -17 402 1 9 1020 456 19 0 0 chr11 57068007 57068060 -64775796 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 9 1020 728 233 46 20 chr11 57068092 57068245 -64775611 + URR1B DNA MER1_type 1 157 -68 9 1020 212 118 0 0 chr11 57068246 57068280 -64775576 + B3 SINE B2 15 48 -168 1 1020 22 56 0 0 chr11 57068305 57068341 -64775515 + AT_rich Low_complexity Low_complexity 1 36 0 1 1020 287 239 63 32 chr11 57068429 57068524 -64775332 + PB1D7 SINE Alu 23 120 0 1 1020 1298 286 52 0 chr11 57068892 57069241 -64774615 + MTE2b LTR MaLR 13 379 0 1 1020 216 0 0 0 chr11 57070792 57070816 -64773040 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1020 340 226 0 0 chr11 57070904 57070966 -64772890 - ID4 SINE ID 0 83 22 1 1020 334 250 0 0 chr11 57070905 57070973 -64772883 - ID SINE ID -141 83 16 1 1020 475 313 60 8 chr11 57070975 57071242 -64772614 - L1MA6 LINE L1 -48 6252 5972 1 1020 465 240 143 66 chr11 57071266 57071462 -64772394 - L1MA6 LINE L1 -399 5901 5691 1 1020 253 277 84 11 chr11 57071793 57071888 -64771968 + MIRb SINE MIR 46 147 -121 1 1020 204 279 0 0 chr11 57073036 57073079 -64770777 + polypurine Low_complexity Low_complexity 2 44 0 1 1020 186 43 0 0 chr11 57073146 57073169 -64770687 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1020 587 280 113 0 chr11 57073180 57073348 -64770508 - ID_B1 SINE B4 -32 192 6 1 1020 679 255 10 50 chr11 57074029 57074231 -64769625 - B3A SINE B2 -3 195 2 1 1020 862 296 18 22 chr11 57074501 57074729 -64769127 + B4A SINE B4 3 229 -63 1 1020 395 305 39 79 chr11 57074731 57074909 -64768947 + B4A SINE B4 4 174 -118 1 1020 1725 200 23 0 chr11 57074962 57075272 -64768584 - MTE2b LTR MaLR -26 353 37 1 1020 652 276 60 19 chr11 57075306 57075620 -64768236 - L1M5 LINE L1 -604 5755 5406 1 1020 904 275 77 96 chr11 57075688 57076106 -64767750 - MTD LTR MaLR -7 412 3 1 1020 1155 98 35 0 chr11 57076227 57076400 -64767456 + URR1A DNA MER1_type 48 226 0 1 1020 5710 126 51 9 chr11 57076430 57077309 -64766547 - Lx4A LINE L1 0 7058 6143 1 1020 224 111 31 31 chr11 57077414 57077479 -64766377 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 1 1020 1841 184 14 51 chr11 57077491 57077923 -64765933 - MT2A LTR ERVL -48 553 1 1 1020 624 303 26 139 chr11 57078001 57078303 -64765553 + B4 SINE B4 3 268 -24 1 1020 585 0 0 0 chr11 57078303 57078368 -64765488 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1020 944 290 21 0 chr11 57080134 57080420 -64763436 + B4A SINE B4 1 292 0 1 1020 182 118 29 0 chr11 57080438 57080472 -64763384 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1020 255 277 84 180 chr11 57080651 57080750 -64763106 - MER5A1 DNA MER1_type -5 161 76 1 1020 710 248 13 0 chr11 57080750 57080903 -64762953 - RSINE1 SINE B4 -8 157 3 1 1020 255 277 84 180 chr11 57080903 57080970 -64762886 - MER5A1 DNA MER1_type -91 75 11 1 1020 495 0 0 0 chr11 57081507 57081562 -64762294 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1020 537 292 17 42 chr11 57081955 57082136 -64761720 + ID_B1 SINE B4 82 269 -23 1 1020 748 237 27 48 chr11 57082136 57082322 -64761534 + B3A SINE B2 1 182 -16 1 1020 245 311 83 69 chr11 57082322 57082344 -64761512 + B4A SINE B4 270 291 -1 1 1020 282 206 0 0 chr11 57082360 57082433 -64761423 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1020 23 33 0 0 chr11 57083525 57083555 -64760301 + AT_rich Low_complexity Low_complexity 1 30 0 1 1020 216 0 0 0 chr11 57083683 57083707 -64760149 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 1 1020 767 234 58 32 chr11 57083978 57084168 -64759688 - MTEa LTR MaLR -1 378 184 1 1020 391 244 45 91 chr11 57084734 57084910 -64758946 + B4A SINE B4 125 292 0 1 1020 746 314 88 8 chr11 57085483 57085859 -64757997 + L1MB1 LINE L1 5510 5915 -253 1 1020 1243 263 87 25 chr11 57085904 57086259 -64757597 - MTE2b LTR MaLR 0 379 3 1 1020 609 159 298 47 chr11 57086315 57086486 -64757370 - B3 SINE B2 -1 215 2 1 1020 336 290 34 27 chr11 57086494 57086643 -64757213 + L1MB1 LINE L1 6017 6166 -2 1 1020 644 286 28 6 chr11 57086656 57086835 -64757021 + B3A SINE B2 1 183 -15 1 1020 342 217 60 9 chr11 57086875 57086991 -64756865 + Lx9 LINE L1 7520 7641 -3 1 1020 21 36 0 0 chr11 57086991 57087019 -64756837 + AT_rich Low_complexity Low_complexity 1 28 0 1 1020 232 125 67 67 chr11 57087871 57087931 -64755925 + ORR1A4 LTR MaLR 111 170 -159 1 1020 1117 257 27 107 chr11 57088848 57089258 -64754598 - MTE2a LTR MaLR 0 379 3 1 1020 299 303 37 69 chr11 57089384 57089533 -64754323 - MIR SINE MIR -55 153 8 1 1020 675 260 64 0 chr11 57089572 57089745 -64754111 + B3A SINE B2 1 184 -14 1 1020 1079 261 105 8 chr11 57089867 57090143 -64753713 - 7SLRNA srpRNA srpRNA -10 304 3 1 1020 341 328 14 36 chr11 57090202 57090341 -64753515 + ID_B1 SINE B4 87 222 -2 1 1020 348 200 36 36 chr11 57090263 57090346 -64753510 + B1_Mur1 SINE Alu 67 149 0 1 1020 197 321 88 35 chr11 57090490 57090644 -64753212 - MIRb SINE MIR -80 188 23 1 1020 1847 213 39 17 chr11 57091704 57092114 -64751742 + MTD LTR MaLR 1 419 0 1 1020 1544 207 11 65 chr11 57092708 57093080 -64750776 - ORR1D1 LTR MaLR -22 352 1 1 1020 6824 89 7 2 chr11 57093094 57094014 -64749842 - L1_Mus4 LINE L1 0 6636 5713 1 1020 3476 61 6 20 chr11 57094010 57094509 -64749347 + MusHAL1 LINE L1 396 887 -1825 1 1020 459 268 21 21 chr11 57094741 57094866 -64748990 + B4 SINE B4 3 121 -44 1 1020 278 128 41 80 chr11 57094823 57094905 -64748951 + MTD LTR MaLR 292 398 -21 1 1020 265 247 78 0 chr11 57096018 57096095 -64747761 - MTEa LTR MaLR -38 341 259 1 1020 538 311 22 0 chr11 57096304 57096439 -64747417 - ID_B1 SINE B4 -6 218 81 1 1020 324 0 0 0 chr11 57096619 57096655 -64747201 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1020 417 39 0 0 chr11 57097358 57097409 -64746447 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1020 1485 257 82 65 chr11 57098453 57098964 -64744892 - RMER5 LTR ERV1 0 534 15 1 1020 249 262 25 156 chr11 57099768 57099890 -64743966 - Charlie1 DNA MER1_type -1270 1511 1406 1 1020 315 234 16 0 chr11 57100641 57100705 -64743151 + B4A SINE B4 208 272 -20 1 1020 820 36 18 0 chr11 57101361 57101473 -64742383 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1020 1109 230 26 56 chr11 57101521 57101788 -64742068 - B4A SINE B4 -27 265 7 1 1020 1914 208 11 14 chr11 57101834 57102205 -64741651 - ORR1D2 LTR MaLR 0 370 1 1 1020 27 0 0 0 chr11 57102317 57102344 -64741512 + AT_rich Low_complexity Low_complexity 1 27 0 1 1020 592 216 0 9 chr11 57103812 57103924 -64739932 + B1F2 SINE Alu 33 143 -6 1 1020 360 256 188 32 chr11 57104278 57104464 -64739392 + L1MEd LINE L1 2 216 -5903 1 1020 1215 61 0 0 chr11 57104787 57104935 -64738921 + B1_Mus1 SINE Alu 1 148 0 1 1020 195 0 86 0 chr11 57104939 57104974 -64738882 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 1020 755 324 31 8 chr11 57106365 57106623 -64737233 + B4A SINE B4 28 291 -1 1 1020 756 310 116 45 chr11 57107213 57107480 -64736376 + B4A SINE B4 7 292 0 1 1020 294 182 0 0 chr11 57107538 57107604 -64736252 + GA-rich Low_complexity Low_complexity 2 67 0 1 1020 945 116 0 0 chr11 57109246 57109392 -64734464 + (TTC)n Simple_repeat Simple_repeat 3 148 0 1 1020 4317 171 65 1 chr11 57109410 57110167 -64733689 - Lx5 LINE L1 -3 7047 6243 1 1020 1061 101 0 26 chr11 57110739 57110891 -64732965 + B1_Mus1 SINE Alu 1 148 0 1 1020 303 309 53 10 chr11 57110965 57111106 -64732750 + MIRb SINE MIR 7 155 -121 1 1020 439 277 48 72 chr11 57111106 57111273 -64732583 + RSINE1 SINE B4 3 165 0 1 1020 198 0 0 0 chr11 57111298 57111320 -64732536 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1020 198 71 0 0 chr11 57111353 57111381 -64732475 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1020 614 79 11 0 chr11 57111407 57111496 -64732360 + (CATA)n Simple_repeat Simple_repeat 1 90 0 1 1020 226 316 0 13 chr11 57112098 57112175 -64731681 + GA-rich Low_complexity Low_complexity 1 76 0 1 1020 783 59 0 0 chr11 57112178 57112279 -64731577 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 1 1020 330 246 0 0 chr11 57112339 57112469 -64731387 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1020 197 232 11 0 chr11 57112517 57112612 -64731244 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1020 225 284 136 26 chr11 57112922 57113040 -64730816 - MIR SINE MIR -109 159 30 1 1020 542 309 21 18 chr11 57113118 57113326 -64730530 + ID_B1 SINE B4 82 292 0 1 1020 208 224 102 0 chr11 57114651 57114700 -64729156 + MIR SINE MIR 94 147 -61 1 1020 649 270 52 141 chr11 57114742 57115147 -64728709 - MTE2a LTR MaLR -5 374 6 1 1020 822 56 0 0 chr11 57116132 57116240 -64727616 + (TTAGGG)n Simple_repeat Simple_repeat 3 110 0 1 1020 1645 184 16 19 chr11 57116425 57116740 -64727116 + MTD LTR MaLR 1 314 -105 1 1020 260 203 68 0 chr11 57116724 57116783 -64727073 - PB1D7 SINE Alu -40 80 18 1 1020 245 295 0 0 chr11 57116998 57117059 -64726797 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1020 270 0 0 0 chr11 57117109 57117139 -64726717 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1020 872 239 6 16 chr11 57117169 57117352 -64726504 + B3A SINE B2 2 182 -16 1 1020 2169 279 83 63 chr11 57118062 57119272 -64724584 - L1_Rod LINE L1 -52 5795 4562 1 1020 1049 289 88 18 chr11 57119279 57119720 -64724136 - L1M2 LINE L1 -1752 4391 3920 1 1020 695 276 61 26 chr11 57119705 57120103 -64723753 - L1M2 LINE L1 -2913 3233 2827 1 1020 225 277 0 0 chr11 57120151 57120252 -64723604 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1020 231 36 0 0 chr11 57120252 57120280 -64723576 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1020 504 0 0 0 chr11 57120284 57120340 -64723516 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1020 235 254 15 15 chr11 57120341 57120409 -64723447 - L1_Rod LINE L1 -3101 2746 2679 1 1020 504 0 0 0 chr11 57122285 57122341 -64721515 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1020 225 0 0 0 chr11 57124262 57124287 -64719569 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1020 385 284 86 26 chr11 57124926 57125078 -64718778 + RSINE1 SINE B4 5 165 0 2 1020 234 339 58 0 chr11 57125228 57125349 -64718507 - MER113 DNA MER1_type -283 238 111 2 1020 254 271 0 0 chr11 57128002 57128061 -64715795 + ID4 SINE ID 25 83 0 2 1020 403 294 21 29 chr11 57128302 57128442 -64715414 + B1F1 SINE Alu 10 148 -1 2 1020 715 229 0 14 chr11 57128462 57128604 -64715252 + B1_Mur3 SINE Alu 9 148 -1 2 1020 888 130 0 5 chr11 57128608 57128835 -64715021 + (TAGA)n Simple_repeat Simple_repeat 1 225 0 2 1020 221 353 114 21 chr11 57131792 57132081 -64711775 + L3 LINE CR1 4126 4441 -48 2 1020 938 236 162 12 chr11 57132240 57132493 -64711363 + B4A SINE B4 2 292 0 2 1020 310 162 27 0 chr11 57132502 57132576 -64711280 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1020 230 299 52 29 chr11 57133693 57133865 -64709991 + MIR SINE MIR 74 249 -13 2 1020 189 301 171 19 chr11 57136552 57136657 -64707199 + MER5B DNA MER1_type 9 129 -49 2 1020 381 93 0 0 chr11 57137049 57137103 -64706753 + (TTG)n Simple_repeat Simple_repeat 1 54 0 2 1020 782 311 17 8 chr11 57137118 57137355 -64706501 + B4A SINE B4 2 240 -52 2 1020 567 0 0 0 chr11 57137388 57137451 -64706405 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1020 326 287 39 79 chr11 57137839 57138017 -64705839 - Lx8 LINE L1 -2 7471 7301 2 1020 2303 249 67 48 chr11 57138015 57138717 -64705139 - Lx8 LINE L1 -326 7147 6433 2 1020 348 281 71 33 chr11 57138733 57138917 -64704939 - Lx8 LINE L1 -1124 6349 6159 2 1020 24 0 0 0 chr11 57138928 57138952 -64704904 + AT_rich Low_complexity Low_complexity 1 24 0 2 1020 584 229 59 59 chr11 57138966 57139119 -64704737 - B3A SINE B2 -2 196 44 2 1020 228 133 33 16 chr11 57140285 57140346 -64703510 + GA-rich Low_complexity Low_complexity 2 63 0 2 1020 180 0 0 0 chr11 57142401 57142421 -64701435 + (GAAA)n Simple_repeat Simple_repeat 3 22 0 2 1020 21 36 0 0 chr11 57143547 57143575 -64700281 + AT_rich Low_complexity Low_complexity 1 28 0 2 1020 521 289 18 0 chr11 57144020 57144134 -64699722 - RSINE1 SINE B4 -4 161 46 2 1020 271 204 19 0 chr11 57144506 57144560 -64699296 + ID4_ SINE ID 15 69 -14 2 1020 288 200 0 0 chr11 57144580 57144650 -64699206 + GA-rich Low_complexity Low_complexity 4 73 0 2 1020 197 214 24 0 chr11 57145074 57145116 -64698740 - MIRb SINE MIR -189 79 37 2 1020 414 0 0 0 chr11 57145341 57145387 -64698469 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1020 234 333 0 14 chr11 57145407 57145477 -64698379 - ID4_ SINE ID -9 74 6 2 1020 735 44 0 0 chr11 57146152 57146243 -64697613 + (TTGG)n Simple_repeat Simple_repeat 1 91 0 2 1020 532 180 60 0 chr11 57146254 57146354 -64697502 - ID_B1 SINE B4 -9 215 110 2 1020 578 303 48 12 chr11 57147064 57147231 -64696625 + ID_B1 SINE B4 34 206 -18 2 1020 780 11 0 0 chr11 57147234 57147323 -64696533 + (TAAAA)n Simple_repeat Simple_repeat 2 90 0 2 1021 859 241 26 33 chr11 57148143 57148386 -64695470 - MTE2a LTR MaLR -6 373 105 2 1021 333 0 0 0 chr11 57148386 57148423 -64695433 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1021 801 262 118 53 chr11 57148423 57148518 -64695338 - MTE2a LTR MaLR -275 104 14 2 1021 297 351 17 26 chr11 57149311 57149428 -64694428 - MER20 DNA MER1_type -102 117 2 2 1021 291 358 50 55 chr11 57149572 57149773 -64694083 - RMER12 LTR ERVK -13 1309 1110 2 1021 1154 95 0 0 chr11 57149961 57150109 -64693747 + B1_Mus1 SINE Alu 1 148 0 2 1021 282 56 0 0 chr11 57150125 57150161 -64693695 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1021 993 152 0 0 chr11 57150161 57150332 -64693524 + GA-rich Low_complexity Low_complexity 10 180 0 2 1021 1424 39 6 0 chr11 57150332 57150511 -64693345 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1021 5222 114 24 9 chr11 57150563 57151425 -64692431 - RLTR22_Mur LTR ERVK -973 875 1 2 1021 1010 212 14 10 chr11 57152440 57152649 -64691207 - B3 SINE B2 -2 214 5 2 1021 1333 69 40 0 chr11 57153364 57153538 -64690318 + B2_Mm2 SINE B2 1 181 -14 2 1021 1169 88 0 0 chr11 57153549 57153697 -64690159 - B1_Mus1 SINE Alu 0 148 1 2 1021 5148 187 42 27 chr11 57153749 57154567 -64689289 + L1_Mur3 LINE L1 294 1110 -6618 2 1021 658 49 10 19 chr11 57154567 57154671 -64689185 - L1Md_F2 LINE L1 -8 6574 6472 2 1021 18068 147 37 49 chr11 57154671 57157254 -64686602 + L1_Mur3 LINE L1 1111 3684 -2196 2 1021 2503 138 7 19 chr11 57157254 57157669 -64686187 - Lx4B LINE L1 0 7058 6649 2 1021 18068 145 37 49 chr11 57157669 57158783 -64685073 + L1_Mur3 LINE L1 3685 4763 -1117 2 1021 1958 53 16 0 chr11 57158788 57159035 -64684821 - L1Md_F2 LINE L1 -2 6580 6330 2 1021 37203 51 12 4 chr11 57159066 57164515 -64679341 + L1Md_T LINE L1 128 5586 -297 2 1021 8188 55 0 0 chr11 57164515 57165511 -64678345 + L1Md_T LINE L1 5587 6582 0 2 1021 5078 161 70 113 chr11 57165526 57166925 -64676931 + Lx7 LINE L1 4765 6149 -1547 2 1021 7498 114 13 19 chr11 57166926 57167463 -64676393 + L1_Mus3 LINE L1 5156 5692 -191 2 1021 6156 122 21 7 chr11 57167463 57168404 -64675452 - RMER17B LTR ERVK -4 954 1 2 1021 7498 89 17 11 chr11 57168404 57169331 -64674525 + L1_Mus3 LINE L1 5693 6631 -7 2 1021 6586 191 74 51 chr11 57169330 57169730 -64674126 + Lx7 LINE L1 6141 6539 -1157 2 1021 2179 99 41 6 chr11 57169730 57170046 -64673810 - ORR1A2 LTR MaLR 0 327 1 2 1021 6586 191 74 51 chr11 57170046 57170885 -64672971 + Lx7 LINE L1 6540 7386 -310 2 1021 614 13 0 13 chr11 57170885 57170961 -64672895 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 1021 6586 191 74 51 chr11 57170961 57171241 -64672615 + Lx7 LINE L1 7387 7695 -1 2 1021 1122 188 9 9 chr11 57171626 57171836 -64672020 + B3 SINE B2 5 214 -2 2 1021 33127 71 15 6 chr11 57172719 57177867 -64665989 + L1Md_F2 LINE L1 392 5586 -297 2 1021 7957 50 4 26 chr11 57177868 57178884 -64664972 + L1Md_F2 LINE L1 5588 6581 -1 2 1021 22 0 0 0 chr11 57179400 57179422 -64664434 + AT_rich Low_complexity Low_complexity 1 22 0 2 1021 877 248 42 35 chr11 57179422 57179706 -64664150 + B4A SINE B4 1 286 -6 2 1021 196 50 0 91 chr11 57179708 57179752 -64664104 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 2 1021 1216 49 0 0 chr11 57180387 57180529 -64663327 - B1_Mus2 SINE Alu -5 142 1 2 1021 183 325 78 17 chr11 57181225 57181341 -64662515 - MIRb SINE MIR -111 157 35 2 1021 4441 62 0 52 chr11 57181470 57182193 -64661663 - Lx3_Mus LINE L1 -1035 5974 5337 2 1021 7647 65 12 14 chr11 57182194 57183230 -64660626 + Lx3_Mus LINE L1 5976 7009 0 2 1021 247 326 191 30 chr11 57183703 57183819 -64660037 + L2b LINE L2 2956 3091 -284 2 1021 414 0 0 0 chr11 57183819 57183865 -64659991 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1021 887 246 57 30 chr11 57183870 57184134 -64659722 - B4 SINE B4 -18 274 4 2 1021 247 326 191 30 chr11 57184134 57184372 -64659484 + L2b LINE L2 3096 3374 -1 2 1021 362 266 70 44 chr11 57184512 57184626 -64659230 - MIR3 SINE MIR -7 201 85 2 1021 767 286 5 21 chr11 57184974 57185163 -64658693 + B3A SINE B2 1 186 -12 2 1021 1986 162 20 50 chr11 57186248 57186413 -64657443 + ORR1B1 LTR MaLR 3 157 -237 2 1021 576 40 0 0 chr11 57186413 57186488 -64657368 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 1021 1986 162 20 50 chr11 57186488 57186725 -64657131 + ORR1B1 LTR MaLR 158 393 -1 2 1021 971 261 135 16 chr11 57186730 57187041 -64656815 + ORR1E LTR MaLR 8 355 -4 2 1021 182 346 24 36 chr11 57187230 57187314 -64656542 - MIR3 SINE MIR -17 191 109 2 1021 240 306 58 54 chr11 57188021 57188236 -64655620 + MIRc SINE MIR 19 224 -38 2 1021 434 248 0 98 chr11 57188275 57188390 -64655466 + HAL1-2a_MD LINE L1 2352 2455 -569 2 1021 1852 169 60 6 chr11 57188390 57188742 -64655114 - ORR1D1 LTR MaLR 0 374 4 2 1021 434 248 0 98 chr11 57188742 57188800 -64655056 + HAL1-2a_MD LINE L1 2456 2508 -516 2 1021 328 344 7 2 chr11 57188966 57189080 -64654776 - PB1D10 SINE Alu -2 118 3 2 1021 331 221 135 0 chr11 57189099 57189203 -64654653 + L1MEf LINE L1 1884 2001 -4399 2 1021 31 0 0 0 chr11 57189210 57189241 -64654615 + AT_rich Low_complexity Low_complexity 1 31 0 2 1021 2909 155 73 75 chr11 57189326 57189912 -64653944 + RMER4B LTR ERVK 1 585 0 2 1021 373 261 148 22 chr11 57190076 57190322 -64653534 + L1MEf LINE L1 2188 2463 -3856 2 1021 5108 211 41 83 chr11 57191269 57192695 -64651161 + ORR1C1-int LTR MaLR 6 1370 0 2 1021 3930 192 18 18 chr11 57192725 57193448 -64650408 + Lx5 LINE L1 6207 6900 -150 2 1021 1490 202 51 64 chr11 57193513 57193888 -64649968 + ORR1C1 LTR MaLR 9 378 0 2 1021 288 271 243 0 chr11 57193978 57194085 -64649771 - B3A SINE B2 -26 172 40 2 1021 278 287 26 44 chr11 57194263 57194376 -64649480 - ORR1E LTR MaLR 0 379 269 2 1021 318 267 98 8 chr11 57194466 57194598 -64649258 - ORR1E LTR MaLR -211 148 5 2 1021 690 303 91 8 chr11 57194602 57194710 -64649146 + L1MEf LINE L1 3831 3945 -2374 2 1021 477 0 0 0 chr11 57194710 57194763 -64649093 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1021 690 303 91 8 chr11 57194763 57195017 -64648839 + L1MEf LINE L1 3946 4222 -2097 2 1021 466 345 65 85 chr11 57195071 57195423 -64648433 + MER2 DNA MER2_type 1 345 0 2 1021 529 252 59 13 chr11 57195456 57195609 -64648247 + B3A SINE B2 1 160 -38 2 1021 506 300 67 55 chr11 57195658 57195770 -64648086 + L1MEf LINE L1 5439 5554 -783 2 1021 834 159 45 0 chr11 57195770 57195902 -64647954 + B1_Mur4 SINE Alu 3 140 -10 2 1021 506 276 56 60 chr11 57195902 57196156 -64647700 + L1MEf LINE L1 5555 5810 -525 2 1021 266 322 101 68 chr11 57196156 57196627 -64647229 + MLT1F LTR MaLR 1 505 -43 2 1021 277 266 62 0 chr11 57196622 57196686 -64647170 - B4 SINE B4 -92 200 133 2 1021 1446 241 5 59 chr11 57197327 57197701 -64646155 + ORR1E LTR MaLR 6 359 0 2 1021 428 307 0 0 chr11 57198286 57198387 -64645469 + ORR1E LTR MaLR 1 101 -258 2 1021 1370 192 14 18 chr11 57198391 57198672 -64645184 - ORR1D1 LTR MaLR -3 371 92 2 1021 689 269 154 29 chr11 57198674 57199122 -64644734 - RLTR12B LTR ERVK -14 514 11 2 1021 543 101 101 0 chr11 57199118 57199217 -64644639 - ORR1D1 LTR MaLR -261 113 5 2 1021 391 269 68 104 chr11 57199243 57199492 -64644364 + ORR1E LTR MaLR 120 359 0 2 1021 3521 30 0 0 chr11 57199791 57200187 -64643669 - MTA_Mm LTR MaLR 0 396 1 2 1021 9370 34 2 1 chr11 57200187 57201284 -64642572 - MTA_Mm-int LTR MaLR 0 1098 1 2 1021 3547 25 0 0 chr11 57201284 57201680 -64642176 - MTA_Mm LTR MaLR 0 396 1 2 1021 365 206 30 80 chr11 57202025 57202125 -64641731 + PB1 SINE Alu 26 120 0 2 1021 324 0 0 0 chr11 57203511 57203547 -64640309 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1021 244 302 27 36 chr11 57203730 57203840 -64640016 - PB1D10 SINE Alu 0 117 9 2 1021 339 335 73 6 chr11 57203906 57204083 -64639773 + Tigger9b DNA MER2_type 13 201 -423 2 1021 897 131 33 0 chr11 57204728 57204881 -64638975 - B2_Mm2 SINE B2 -1 194 37 2 1021 183 271 0 0 chr11 57204921 57204980 -64638876 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1021 680 258 108 9 chr11 57205032 57205255 -64638601 - B4A SINE B4 -42 250 6 2 1021 243 0 0 0 chr11 57205863 57205890 -64637966 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1021 655 243 14 14 chr11 57205895 57206029 -64637827 + B1_Mur1 SINE Alu 2 137 -12 3 1021 432 0 0 0 chr11 57206029 57206077 -64637779 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 3 1021 375 328 25 0 chr11 57206289 57206408 -64637448 - B4A SINE B4 -169 123 2 3 1021 442 320 61 112 chr11 57206430 57206972 -64636884 - L1M2 LINE L1 -3401 3444 2931 3 1021 1228 168 87 12 chr11 57207039 57207280 -64636576 - MTC LTR MaLR -162 259 1 3 1021 325 313 152 20 chr11 57207297 57207692 -64636164 - L1M2 LINE L1 -4311 2538 2092 3 1021 228 312 0 15 chr11 57207716 57207781 -64636075 - RSINE1 SINE B4 -2 163 100 3 1021 533 211 9 9 chr11 57207845 57207960 -64635896 - RSINE1 SINE B4 -47 118 4 3 1021 261 306 9 0 chr11 57207980 57208091 -64635765 - L1M2 LINE L1 -4791 2058 1947 3 1021 381 156 13 13 chr11 57208281 57208358 -64635498 - MLT1A0 LTR MaLR -19 346 270 3 1021 301 261 56 40 chr11 57208358 57208447 -64635409 + PB1 SINE Alu 2 88 -61 3 1021 510 244 109 8 chr11 57208497 57208625 -64635231 + RSINE1 SINE B4 2 142 -23 3 1021 396 0 0 0 chr11 57208628 57208672 -64635184 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1021 713 247 147 11 chr11 57208679 57209131 -64634725 + L1MEg LINE L1 1795 2293 -3853 3 1021 425 271 80 98 chr11 57209258 57209532 -64634324 + B4 SINE B4 3 271 -21 3 1021 252 333 0 0 chr11 57209547 57209625 -64634231 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1021 229 179 30 0 chr11 57209855 57209868 -64633988 + polypyrimidine Low_complexity Low_complexity 57 69 0 3 1021 534 16 0 0 chr11 57209868 57209931 -64633925 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1021 229 179 30 0 chr11 57209931 57209984 -64633872 + CT-rich Low_complexity Low_complexity 2 56 0 3 1021 820 270 75 50 chr11 57210221 57210502 -64633354 + B4 SINE B4 3 290 -2 3 1021 325 282 75 17 chr11 57210816 57210989 -64632867 + L1MC4 LINE L1 7711 7893 -149 3 1021 1070 258 81 45 chr11 57211402 57211759 -64632097 + Lx8 LINE L1 6850 7219 -254 3 1021 626 127 15 0 chr11 57211759 57211893 -64631963 + (CAGA)n Simple_repeat Simple_repeat 1 136 0 3 1021 400 263 0 69 chr11 57211893 57211995 -64631861 + Lx8 LINE L1 7214 7308 -165 3 1021 26 0 0 0 chr11 57212755 57212781 -64631075 + AT_rich Low_complexity Low_complexity 1 26 0 3 1021 1103 225 11 33 chr11 57212921 57213192 -64630664 + MTD LTR MaLR 13 277 -142 3 1021 379 288 38 60 chr11 57213354 57213442 -64630414 + ORR1E LTR MaLR 20 111 -248 3 1021 2485 115 56 5 chr11 57213442 57213817 -64630039 + ORR1B1 LTR MaLR 1 394 0 3 1021 379 288 38 60 chr11 57213817 57213861 -64629995 + ORR1E LTR MaLR 112 149 -210 3 1021 799 268 71 51 chr11 57214230 57214541 -64629315 - MTE2a LTR MaLR -33 346 30 3 1021 750 175 0 0 chr11 57214690 57214833 -64629023 + (TG)n Simple_repeat Simple_repeat 2 144 0 3 1021 28 0 0 0 chr11 57215147 57215175 -64628681 + AT_rich Low_complexity Low_complexity 1 28 0 3 1021 649 206 71 0 chr11 57215684 57215825 -64628031 - B3A SINE B2 -47 151 1 3 1021 183 129 0 0 chr11 57215909 57215940 -64627916 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1021 866 208 43 139 chr11 57215944 57216246 -64627610 - B4 SINE B4 -19 273 1 3 1021 314 183 17 0 chr11 57216942 57217002 -64626854 + PB1D10 SINE Alu 1 61 -56 3 1021 24 0 0 0 chr11 57217022 57217046 -64626810 + AT_rich Low_complexity Low_complexity 1 24 0 3 1021 1686 172 94 3 chr11 57217160 57217499 -64626357 + MTD LTR MaLR 1 370 -49 3 1021 750 291 73 22 chr11 57218030 57218304 -64625552 + B4 SINE B4 1 288 -4 3 1021 315 208 114 37 chr11 57218995 57219077 -64624779 + PB1D10 SINE Alu 1 101 -26 3 1021 332 289 0 0 chr11 57219130 57219206 -64624650 + PB1D10 SINE Alu 3 78 -39 3 1021 285 229 0 0 chr11 57219306 57219367 -64624489 + MTE2b LTR MaLR 4 64 -315 3 1021 351 0 0 0 chr11 57219367 57219406 -64624450 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1021 240 348 130 26 chr11 57219504 57219619 -64624237 + L2b LINE L2 3242 3368 -7 3 1021 1920 162 72 11 chr11 57219842 57220204 -64623652 - ORR1C2 LTR MaLR 0 384 1 3 1021 402 261 28 42 chr11 57220817 57220957 -64622899 + B1F2 SINE Alu 5 149 0 3 1021 301 273 22 22 chr11 57221040 57221130 -64622726 - MIRc SINE MIR -102 166 77 3 1021 332 304 123 22 chr11 57222348 57222486 -64621370 + MIR SINE MIR 24 175 -87 3 1021 304 330 64 0 chr11 57223237 57223331 -64620525 - MIRc SINE MIR -54 214 115 3 1021 1528 274 138 21 chr11 57223467 57223866 -64619990 + Lx8 LINE L1 6826 7247 -226 3 1021 2980 68 36 5 chr11 57223866 57224250 -64619606 - MTA_Mm LTR MaLR 0 396 1 3 1021 1528 274 138 21 chr11 57224250 57224428 -64619428 + Lx8 LINE L1 7248 7471 -2 3 1021 33 25 0 0 chr11 57224432 57224472 -64619384 + AT_rich Low_complexity Low_complexity 1 40 0 3 1021 232 130 26 61 chr11 57224473 57224588 -64619268 + (TTATA)n Simple_repeat Simple_repeat 2 112 0 3 1021 56 39 0 0 chr11 57224595 57224672 -64619184 + AT_rich Low_complexity Low_complexity 1 77 0 3 1021 285 294 68 50 chr11 57224787 57224948 -64618908 - MIRb SINE MIR -26 242 79 3 1021 883 216 24 141 chr11 57225045 57225336 -64618520 - MTE2b LTR MaLR 0 379 123 3 1021 590 268 184 34 chr11 57225846 57226085 -64617771 + B4A SINE B4 10 284 -8 3 1021 915 124 0 0 chr11 57226094 57226239 -64617617 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 1021 267 300 102 42 chr11 57226623 57226758 -64617098 - L2a LINE L2 -18 3408 3222 3 1021 1697 191 47 35 chr11 57226942 57227283 -64616573 + ORR1E LTR MaLR 1 345 -14 3 1021 940 251 82 38 chr11 57227893 57228320 -64615536 - RMER5 LTR ERV1 -5 529 44 3 1021 504 0 0 0 chr11 57229007 57229063 -64614793 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1021 367 326 20 27 chr11 57229065 57229213 -64614643 - RSINE1 SINE B4 -17 148 2 3 1021 212 143 24 0 chr11 57229214 57229256 -64614600 + CT-rich Low_complexity Low_complexity 2 44 0 3 1021 239 260 60 83 chr11 57229263 57229347 -64614509 - B1F SINE Alu -54 95 14 3 1021 195 348 58 29 chr11 57229896 57230035 -64613821 + MER5A DNA MER1_type 23 165 -24 3 1021 410 221 60 73 chr11 57230147 57230298 -64613558 - MLT1E3 LTR MaLR -2 622 474 3 1021 877 251 193 29 chr11 57230359 57230675 -64613181 - MTEb LTR MaLR -9 370 3 3 1021 2740 256 79 28 chr11 57230676 57230751 -64613105 + Lx8 LINE L1 6103 6183 -1290 3 1021 507 73 0 0 chr11 57230751 57230819 -64613037 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1021 2740 256 79 28 chr11 57230819 57231616 -64612240 + Lx8 LINE L1 6184 7019 -454 3 1021 180 0 0 0 chr11 57231859 57231879 -64611977 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1021 1103 248 49 101 chr11 57231879 57232164 -64611692 - MTEb LTR MaLR -30 349 81 3 1021 729 0 0 0 chr11 57232164 57232245 -64611611 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1021 1103 248 49 101 chr11 57232245 57232327 -64611529 - MTEb LTR MaLR -299 80 1 3 1021 234 0 0 0 chr11 57232555 57232581 -64611275 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 1021 258 261 0 0 chr11 57232619 57232684 -64611172 - MIRb SINE MIR -182 86 22 3 1021 586 264 14 20 chr11 57232763 57232910 -64610946 + RSINE1 SINE B4 3 148 -17 3 1021 212 286 32 0 chr11 57232934 57232997 -64610859 + GA-rich Low_complexity Low_complexity 2 66 0 3 1021 399 328 77 105 chr11 57233587 57234094 -64609762 + MLT1H2 LTR MaLR 39 547 -2 3 1021 301 260 238 9 chr11 57234309 57234414 -64609442 - ID_B1 SINE B4 -2 222 94 3 1021 437 322 22 74 chr11 57234494 57234725 -64609131 + Charlie19a DNA Charlie 137 355 -31 3 1021 641 182 7 13 chr11 57235901 57236029 -64607827 + B3A SINE B2 1 129 -87 3 1021 2650 43 15 0 chr11 57236206 57236532 -64607324 + IAPEY_LTR LTR ERVK 55 385 0 3 1021 3024 132 39 12 chr11 57236638 57237128 -64606728 + RMER20A LTR ERVK 14 516 0 3 1021 698 222 6 47 chr11 57237204 57237374 -64606482 - RSINE1 SINE B4 -1 164 2 3 1021 210 239 26 52 chr11 57237455 57237570 -64606286 + (TTTG)n Simple_repeat Simple_repeat 1 112 0 3 1021 790 212 7 0 chr11 57237571 57237717 -64606139 - B1F SINE Alu -2 147 1 3 1021 1623 209 58 17 chr11 57238084 57238430 -64605426 + MTEa LTR MaLR 20 379 0 3 1021 709 264 101 178 chr11 57238894 57239299 -64604557 + MTE2a LTR MaLR 1 374 -5 3 1021 252 219 15 30 chr11 57239285 57239351 -64604505 + B4 SINE B4 214 278 -14 3 1021 345 186 0 0 chr11 57241270 57241329 -64602527 + ID_B1 SINE B4 165 223 -1 3 1021 300 290 14 0 chr11 57241335 57241404 -64602452 + ID4_ SINE ID 4 73 -10 3 1021 186 180 49 0 chr11 57241404 57241465 -64602391 + GA-rich Low_complexity Low_complexity 3 66 0 3 1021 495 274 43 22 chr11 57241475 57241613 -64602243 + ID_B1 SINE B4 81 221 -3 3 1021 264 274 40 27 chr11 57241737 57241812 -64602044 - MIR SINE MIR -112 150 75 3 1021 375 165 0 0 chr11 57242369 57242454 -64601402 + CT-rich Low_complexity Low_complexity 1 85 0 3 1021 465 274 17 17 chr11 57242478 57242593 -64601263 + ID_B1 SINE B4 110 224 0 3 1021 394 324 5 63 chr11 57242786 57242977 -64600879 + MER117 DNA MER1_type 4 183 -14 3 1021 205 227 0 22 chr11 57243301 57243346 -64600510 - MIRc SINE MIR -62 206 163 3 1021 629 269 60 45 chr11 57243506 57243798 -64600058 - B4 SINE B4 -14 278 11 3 1021 246 156 0 0 chr11 57244412 57244457 -64599399 + GA-rich Low_complexity Low_complexity 3 47 0 3 1021 833 216 26 123 chr11 57244462 57244571 -64599285 - B4 SINE B4 -86 206 109 3 1021 633 211 68 30 chr11 57244571 57244703 -64599153 + B1F2 SINE Alu 5 141 -8 3 1021 732 94 0 0 chr11 57244703 57244809 -64599047 + (GGGA)n Simple_repeat Simple_repeat 4 109 0 3 1021 833 216 26 123 chr11 57244809 57244925 -64598931 - B4 SINE B4 -184 108 3 3 1021 21 57 0 0 chr11 57244975 57245010 -64598846 + AT_rich Low_complexity Low_complexity 1 35 0 3 1021 506 294 121 40 chr11 57245144 57245491 -64598365 + Charlie7 DNA MER1_type 1956 2330 -282 4 1021 307 231 61 88 chr11 57245522 57245636 -64598220 + B3A SINE B2 72 182 -16 4 1021 23 0 0 0 chr11 57245787 57245810 -64598046 + AT_rich Low_complexity Low_complexity 1 23 0 4 1021 183 80 0 0 chr11 57246685 57246710 -64597146 + (CTTTG)n Simple_repeat Simple_repeat 5 29 0 4 1021 501 237 0 81 chr11 57246710 57246824 -64597032 - PB1D10 SINE Alu -11 106 2 4 1021 249 314 62 76 chr11 57246824 57246909 -64596947 - B4A SINE B4 -207 85 3 4 1021 1058 263 13 0 chr11 57247439 57247667 -64596189 + B4A SINE B4 10 240 -52 4 1021 621 0 0 0 chr11 57247677 57247746 -64596110 + (CATA)n Simple_repeat Simple_repeat 2 70 0 4 1021 348 298 0 0 chr11 57248034 57248118 -64595738 + B1F1 SINE Alu 15 98 -51 4 1021 369 250 25 0 chr11 57248136 57248296 -64595560 + GA-rich Low_complexity Low_complexity 2 165 0 4 1021 1980 110 21 62 chr11 57248476 57248816 -64595040 - ORR1A4 LTR MaLR -3 326 1 4 1021 495 0 0 0 chr11 57249867 57249922 -64593934 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1021 780 246 68 5 chr11 57249929 57250121 -64593735 - ID_B1 SINE B4 -16 208 5 4 1021 197 150 49 24 chr11 57250184 57250225 -64593631 - MIR SINE MIR -124 138 97 4 1021 892 259 5 15 chr11 57250553 57250746 -64593110 - MTE2b LTR MaLR 0 379 189 4 1021 2471 123 51 3 chr11 57250746 57251138 -64592718 - MTC LTR MaLR -3 418 8 4 1021 416 298 171 71 chr11 57251139 57251309 -64592547 - MTE2b LTR MaLR -180 199 13 4 1021 306 274 193 27 chr11 57251309 57251459 -64592397 + MLT1K LTR MaLR 310 484 -111 4 1021 487 290 137 16 chr11 57251647 57251896 -64591960 - B4A SINE B4 -12 280 2 4 1021 1173 134 38 0 chr11 57252215 57252401 -64591455 - B2_Mm2 SINE B2 -1 194 2 4 1021 1126 197 162 52 chr11 57252479 57252806 -64591050 - Lx8 LINE L1 -2 7471 7109 4 1021 730 316 9 14 chr11 57253819 57254040 -64589816 + B4 SINE B4 15 234 -58 4 1021 952 320 18 55 chr11 57254132 57254361 -64589495 + RMER5 LTR ERV1 143 361 -173 4 1021 1107 80 0 0 chr11 57254361 57254498 -64589358 + B1_Mus1 SINE Alu 1 137 -11 4 1021 486 0 0 0 chr11 57254498 57254552 -64589304 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 4 1021 952 320 18 55 chr11 57254552 57254721 -64589135 + RMER5 LTR ERV1 362 526 -8 4 1021 278 323 73 79 chr11 57254851 57255029 -64588827 - MLT2B4 LTR ERVL -89 467 253 4 1021 606 278 117 23 chr11 57255247 57255512 -64588344 + B4 SINE B4 3 292 0 4 1021 267 357 76 31 chr11 57255652 57255809 -64588047 + L1MA4 LINE L1 2114 2289 -3851 4 1021 3088 18 9 0 chr11 57255809 57256152 -64587704 - ORR1A0 LTR MaLR 0 346 1 4 1021 267 357 76 31 chr11 57256152 57256376 -64587480 + L1MA4 LINE L1 2290 2512 -3628 4 1021 826 184 65 69 chr11 57256412 57256613 -64587243 + B3 SINE B2 2 202 -14 4 1021 1240 54 0 0 chr11 57256613 57256760 -64587096 + B1_Mm SINE Alu 1 147 0 4 1021 826 184 65 69 chr11 57256760 57256774 -64587082 + B3 SINE B2 203 216 0 4 1021 2259 172 62 92 chr11 57256791 57257278 -64586578 - RLTR18B LTR ERVK -40 472 1 4 1021 777 333 42 55 chr11 57257291 57257653 -64586203 + L1MA4 LINE L1 2513 2870 -3273 4 1021 746 120 152 0 chr11 57257653 57257778 -64586078 - B1_Mur2 SINE Alu -4 145 2 4 1021 777 333 42 55 chr11 57257778 57258210 -64585646 + L1MA4 LINE L1 2871 3296 -2847 4 1021 389 303 71 15 chr11 57258232 57258430 -64585426 + L1MA4 LINE L1 5727 5935 -365 4 1021 408 20 0 0 chr11 57258440 57258489 -64585367 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1021 2417 74 6 39 chr11 57260629 57260967 -64582889 - ORR1A2 LTR MaLR 0 327 1 4 1021 2034 149 0 15 chr11 57260986 57260997 -64582859 - Lx3B LINE L1 -1059 5914 5906 4 1021 3207 166 34 2 chr11 57260997 57261534 -64582322 - Lx LINE L1 -5 6649 6096 4 1021 4176 117 0 7 chr11 57261534 57262156 -64581700 - Lx3B LINE L1 -1068 5905 5288 4 1021 473 32 16 0 chr11 57263720 57263783 -64580073 + (ATTG)n Simple_repeat Simple_repeat 4 67 0 4 1021 293 214 18 0 chr11 57264439 57264495 -64579361 - ID4_ SINE ID -3 80 24 4 1021 380 224 36 45 chr11 57264545 57264657 -64579199 - PB1D10 SINE Alu -4 113 3 4 1021 1213 41 14 0 chr11 57264895 57265040 -64578816 + B1_Mus2 SINE Alu 1 147 0 4 1021 627 100 0 0 chr11 57265650 57265760 -64578096 + (TG)n Simple_repeat Simple_repeat 2 111 0 4 1021 359 232 0 14 chr11 57265961 57266101 -64577755 + (CATA)n Simple_repeat Simple_repeat 1 138 0 4 1021 215 286 16 0 chr11 57266106 57266169 -64577687 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1021 667 343 8 20 chr11 57266328 57266575 -64577281 - Lx8 LINE L1 -197 7276 7033 4 1021 385 383 0 0 chr11 57266576 57266756 -64577100 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1021 258 249 164 87 chr11 57266782 57266989 -64576867 - RMER12 LTR ERVK -355 967 745 4 1021 1814 165 147 46 chr11 57268082 57268476 -64575380 + RLTR41 LTR ERV1 13 446 0 4 1021 369 286 87 147 chr11 57268748 57269047 -64574809 - B4 SINE B4 -10 282 2 4 1021 802 276 133 0 chr11 57269107 57269332 -64574524 + B4A SINE B4 24 278 -14 4 1021 513 0 0 0 chr11 57269332 57269389 -64574467 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1021 180 0 0 0 chr11 57269389 57269408 -64574448 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1021 204 182 0 0 chr11 57269458 57269502 -64574354 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1021 459 116 63 0 chr11 57269654 57269749 -64574107 + CT-rich Low_complexity Low_complexity 1 101 0 4 1021 593 344 32 0 chr11 57269749 57269935 -64573921 - B4 SINE B4 -98 194 3 4 1021 1376 78 39 0 chr11 57270111 57270290 -64573566 + B2_Mm2 SINE B2 2 187 -8 4 1021 896 249 69 97 chr11 57270848 57271239 -64572617 - Lx8 LINE L1 -4 7469 7090 4 1021 457 340 110 51 chr11 57271936 57272407 -64571449 - LTR86A1 LTR ERVL -2 511 13 4 1021 413 161 49 0 chr11 57272744 57272825 -64571031 + B4A SINE B4 6 90 -202 4 1021 527 291 8 8 chr11 57272818 57272946 -64570910 + RSINE1 SINE B4 28 155 -10 4 1021 664 279 49 22 chr11 57272981 57273164 -64570692 + B4A SINE B4 105 292 0 4 1021 260 262 0 0 chr11 57273169 57273230 -64570626 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1021 268 312 42 31 chr11 57274029 57274125 -64569731 + MIR SINE MIR 36 132 -76 4 1021 614 180 69 35 chr11 57274437 57274581 -64569275 + B1F SINE Alu 1 149 0 4 1021 248 217 0 11 chr11 57274708 57274801 -64569055 + (TGG)n Simple_repeat Simple_repeat 3 94 0 4 1021 666 278 58 16 chr11 57274981 57275171 -64568685 + MTD LTR MaLR 1 198 -221 4 1021 1183 243 42 69 chr11 57275207 57275539 -64568317 + MTE2a LTR MaLR 57 379 0 4 1021 916 69 37 26 chr11 57275843 57276113 -64567743 + (CATA)n Simple_repeat Simple_repeat 1 272 0 4 1021 347 297 49 103 chr11 57276121 57276324 -64567532 - MLT1A1 LTR MaLR -192 216 25 4 1021 818 263 82 39 chr11 57276814 57277095 -64566761 + Lx7 LINE L1 5597 5889 -1807 4 1021 1060 113 0 0 chr11 57277162 57277303 -64566553 - B1_Mur3 SINE Alu -7 142 2 4 1021 384 219 12 0 chr11 57277479 57277561 -64566295 + B3A SINE B2 98 180 -18 4 1021 340 194 30 0 chr11 57277685 57277752 -64566104 + ID4 SINE ID 5 73 -10 4 1021 396 0 0 0 chr11 57277755 57277799 -64566057 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 4 1021 232 143 0 0 chr11 57278034 57278069 -64565787 - Lx9 LINE L1 -1764 5880 5846 4 1021 220 211 154 0 chr11 57278322 57278374 -64565482 + L2c LINE L2 3019 3078 -309 4 1022 26 50 0 0 chr11 57279592 57279632 -64564224 + AT_rich Low_complexity Low_complexity 1 40 0 4 1022 24 0 0 0 chr11 57280710 57280734 -64563122 + GC_rich Low_complexity Low_complexity 1 24 0 4 1022 769 267 155 90 chr11 57281714 57282068 -64561788 - MTE2a LTR MaLR 0 379 3 4 1022 593 244 117 38 chr11 57282071 57282283 -64561573 - MTE2a-int LTR MaLR -2 1578 1350 4 1022 569 273 78 61 chr11 57282283 57282490 -64561366 + B3A SINE B2 1 195 0 4 1022 226 331 47 61 chr11 57282620 57282768 -64561088 + MER5A1 DNA MER1_type 9 154 -12 4 1022 599 246 15 62 chr11 57283598 57283793 -64560063 + MTEb LTR MaLR 77 262 -117 4 1022 936 121 14 7 chr11 57283869 57284011 -64559845 + B1_Mur3 SINE Alu 1 143 -6 4 1022 1456 276 44 28 chr11 57284016 57284590 -64559266 + L1_Mur3 LINE L1 2460 3042 -2838 4 1022 327 192 179 0 chr11 57284622 57284700 -64559156 + B3 SINE B2 2 93 -123 4 1022 2706 224 80 78 chr11 57284702 57284897 -64558959 + L1_Mur3 LINE L1 3478 3649 -2231 4 1022 567 0 0 0 chr11 57284897 57284960 -64558896 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 4 1022 2706 224 80 78 chr11 57284960 57285047 -64558809 + L1_Mur3 LINE L1 3650 3694 -2186 4 1022 711 0 0 0 chr11 57285047 57285126 -64558730 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4 1022 2706 224 80 78 chr11 57285126 57285788 -64558068 + L1_Mur3 LINE L1 3695 4424 -1456 4 1022 286 167 75 106 chr11 57285790 57285884 -64557972 - B4 SINE B4 -201 91 1 4 1022 429 165 0 0 chr11 57285990 57286111 -64557745 + (CCCCAG)n Simple_repeat Simple_repeat 2 122 0 4 1022 477 0 0 0 chr11 57286780 57286833 -64557023 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1022 232 178 44 0 chr11 57286851 57286896 -64556960 - L1M2 LINE L1 -816 5484 5438 4 1022 263 322 108 60 chr11 57286899 57287084 -64556772 + YREP_Mm Unknown Unknown 81 274 -1538 4 1022 566 177 0 0 chr11 57286990 57287086 -64556770 - ID_B1 SINE B4 -7 217 122 4 1022 766 268 40 4 chr11 57287303 57287576 -64556280 - L1M2 LINE L1 -1361 4782 4500 4 1022 1861 105 13 174 chr11 57288169 57288561 -64555295 + ORR1A4 LTR MaLR 1 329 0 4 1022 536 0 16 0 chr11 57288930 57288994 -64554862 + (TTGG)n Simple_repeat Simple_repeat 3 67 0 4 1022 360 268 72 92 chr11 57289001 57289153 -64554703 - RSINE1 SINE B4 -15 150 2 4 1022 3294 46 5 2 chr11 57289301 57289695 -64554161 - MTA_Mm LTR MaLR -1 395 1 4 1022 2240 12 8 11 chr11 57289906 57290168 -64553688 - L1Md_F3 LINE L1 -1 6583 6323 4 1022 1248 14 0 0 chr11 57290170 57290312 -64553544 + L1Md_F2 LINE L1 5684 5825 -757 4 1022 502 242 8 15 chr11 57290883 57291013 -64552843 - MTD LTR MaLR -27 392 264 4 1022 356 267 40 62 chr11 57291540 57291716 -64552140 - L1MD2 LINE L1 -408 5951 5780 4 1022 522 302 136 19 chr11 57292141 57292347 -64551509 + MIR SINE MIR 1 230 -32 5 1022 202 247 164 0 chr11 57292424 57292497 -64551359 - MIR SINE MIR -121 141 57 5 1022 4934 130 30 49 chr11 57292671 57293561 -64550295 + RMER17A2 LTR ERVK 1 880 -26 5 1022 2947 43 3 3 chr11 57293561 57293907 -64549949 + ORR1A1 LTR MaLR 1 346 0 5 1022 4934 130 30 49 chr11 57293907 57293939 -64549917 + RMER17A2 LTR ERVK 881 906 0 5 1022 1155 273 48 84 chr11 57294450 57294941 -64548915 + MT2B2 LTR ERVL 17 584 0 5 1022 478 227 119 13 chr11 57295179 57295311 -64548545 + B1_Mur1 SINE Alu 1 149 0 5 1022 1898 239 54 27 chr11 57295334 57295885 -64547971 + Lx8 LINE L1 6901 7466 -7 5 1022 201 147 0 0 chr11 57297272 57297306 -64546550 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1022 2715 119 1 78 chr11 57297860 57298513 -64545343 + L1_Mm LINE L1 4716 5261 -616 5 1022 6870 35 0 0 chr11 57298519 57299313 -64544543 + L1_Mus1 LINE L1 5772 6565 -2 5 1022 181 315 148 0 chr11 57299525 57299579 -64544277 + L3 LINE CR1 2917 2978 -1511 5 1022 24 0 0 0 chr11 57300042 57300066 -64543790 + AT_rich Low_complexity Low_complexity 1 24 0 5 1022 636 280 33 0 chr11 57300105 57300255 -64543601 - RSINE1 SINE B4 -8 157 3 5 1022 534 208 0 19 chr11 57300476 57300579 -64543277 - B3 SINE B2 -115 101 1 5 1022 186 71 0 0 chr11 57301158 57301186 -64542670 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1022 405 0 0 0 chr11 57301371 57301416 -64542440 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1022 435 242 85 8 chr11 57301439 57301568 -64542288 - RSINE1 SINE B4 -23 142 4 5 1022 331 295 22 50 chr11 57301611 57301793 -64542063 + L1MA4 LINE L1 5787 5963 -337 5 1022 1024 247 147 15 chr11 57301901 57302234 -64541622 + MTE2b LTR MaLR 3 379 0 5 1022 714 252 57 28 chr11 57302802 57303014 -64540842 - ORR1E LTR MaLR -141 218 1 5 1022 340 298 152 24 chr11 57303031 57303196 -64540660 + L1M4 LINE L1 4808 4993 -1153 5 1022 598 39 0 0 chr11 57303284 57303361 -64540495 + B1_Mus1 SINE Alu 2 78 -70 5 1022 250 253 67 0 chr11 57303501 57303576 -64540280 + L1MB7 LINE L1 6081 6160 -24 5 1022 461 134 1 80 chr11 57304337 57304437 -64539419 - B1_Mur2 SINE Alu -1 148 53 5 1022 315 0 0 0 chr11 57304533 57304568 -64539288 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1022 216 0 0 0 chr11 57304568 57304591 -64539265 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1022 1228 41 0 7 chr11 57304709 57304857 -64538999 - B1_Mus2 SINE Alu 0 147 1 5 1022 213 108 0 0 chr11 57304889 57304926 -64538930 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1022 356 293 123 31 chr11 57304975 57305137 -64538719 + MIRb SINE MIR 89 265 -3 5 1022 204 194 0 0 chr11 57305845 57305881 -64537975 + CT-rich Low_complexity Low_complexity 3 38 0 5 1022 1049 269 10 31 chr11 57306170 57306462 -64537394 - B4A SINE B4 -6 286 1 5 1022 2267 190 98 16 chr11 57307182 57307680 -64536176 + RLTR20A LTR ERVK 1 539 -2 5 1022 1131 186 198 35 chr11 57308415 57308572 -64535284 + ORR1D1 LTR MaLR 1 200 -174 5 1022 462 18 0 0 chr11 57308572 57308627 -64535229 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1022 1131 186 198 35 chr11 57308627 57308787 -64535069 + ORR1D1 LTR MaLR 201 370 -4 5 1022 1511 240 67 21 chr11 57309438 57309825 -64534031 + MTD LTR MaLR 1 405 -14 5 1022 795 114 130 0 chr11 57309888 57310019 -64533837 + B1_Mus1 SINE Alu 1 148 0 5 1022 768 274 58 29 chr11 57310362 57310569 -64533287 + B4A SINE B4 80 292 0 5 1022 868 209 79 5 chr11 57310697 57310899 -64532957 + ID_B1 SINE B4 2 218 -6 5 1022 232 244 51 13 chr11 57311256 57311335 -64532521 + L1MC4 LINE L1 7550 7631 -411 5 1022 1558 156 135 38 chr11 57311378 57311725 -64532131 + ORR1C2 LTR MaLR 4 384 0 5 1022 228 289 12 12 chr11 57311748 57311832 -64532024 + L1MC4 LINE L1 7739 7822 -220 5 1022 611 292 140 84 chr11 57311996 57312317 -64531539 + ORR1E LTR MaLR 1 339 -20 5 1022 594 224 0 9 chr11 57313059 57313167 -64530689 - PB1D10 SINE Alu -10 107 1 5 1022 1204 63 0 0 chr11 57313367 57313510 -64530346 + B1_Mus2 SINE Alu 1 143 -4 5 1022 183 42 0 0 chr11 57313510 57313534 -64530322 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1022 1352 102 5 0 chr11 57313545 57313732 -64530124 + B2_Mm1t SINE B2 1 188 -5 5 1022 1950 195 71 16 chr11 57313735 57314115 -64529741 + MTC LTR MaLR 1 401 -20 5 1022 1257 27 0 0 chr11 57314265 57314412 -64529444 - B1_Mus2 SINE Alu 0 147 1 5 1022 875 43 17 0 chr11 57315422 57315537 -64528319 + (CAGGG)n Simple_repeat Simple_repeat 3 119 0 5 1022 441 0 0 0 chr11 57315648 57315697 -64528159 + (CATA)n Simple_repeat Simple_repeat 2 50 0 5 1022 242 291 149 32 chr11 57315945 57316133 -64527723 - MIRb SINE MIR -21 247 38 5 1022 249 167 258 32 chr11 57316611 57316704 -64527152 - Charlie1a DNA MER1_type -54 1401 1288 5 1022 938 265 25 11 chr11 57316767 57317049 -64526807 + B4A SINE B4 3 288 -4 5 1022 354 98 0 0 chr11 57317069 57317120 -64526736 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1022 334 259 12 12 chr11 57317207 57317289 -64526567 - ID4_ SINE ID -1 82 1 5 1022 420 298 93 35 chr11 57317294 57317551 -64526305 - Charlie1a DNA MER1_type -194 1261 990 5 1022 207 204 0 0 chr11 57317596 57317640 -64526216 + G-rich Low_complexity Low_complexity 4 47 0 5 1022 1741 131 148 9 chr11 57317826 57318143 -64525713 + ORR1B1 LTR MaLR 1 361 -33 5 1022 418 228 39 10 chr11 57318140 57318242 -64525614 - B4 SINE B4 -187 105 1 5 1022 374 298 80 0 chr11 57318951 57319075 -64524781 - PB1D10 SINE Alu -13 136 1 5 1022 846 141 210 22 chr11 57319100 57319281 -64524575 + B3 SINE B2 2 216 0 5 1022 689 227 85 6 chr11 57319407 57319584 -64524272 + B3A SINE B2 2 192 -6 5 1022 752 170 28 14 chr11 57319592 57319735 -64524121 + B1_Mur1 SINE Alu 4 148 -1 5 1022 1569 11 0 0 chr11 57319865 57320044 -64523812 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 1022 308 83 21 0 chr11 57320044 57320092 -64523764 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1022 222 128 0 0 chr11 57320092 57320131 -64523725 + (CAGG)n Simple_repeat Simple_repeat 2 40 0 5 1022 326 228 19 148 chr11 57321224 57321332 -64522524 + PB1 SINE Alu 13 106 -21 5 1022 279 365 10 10 chr11 57321356 57321453 -64522403 + BC1_Mm scRNA scRNA 14 110 -42 5 1022 1827 117 56 74 chr11 57321571 57321895 -64521961 - ORR1A4 LTR MaLR -2 327 10 5 1022 260 315 98 0 chr11 57321897 57322040 -64521816 + L1M5 LINE L1 5656 5812 -361 5 1022 1076 125 57 6 chr11 57322545 57322722 -64521134 - B2_Mm2 SINE B2 -9 186 1 5 1022 1284 77 55 0 chr11 57323055 57323236 -64520620 + B2_Mm2 SINE B2 1 191 -4 5 1022 584 274 226 0 chr11 57323812 57324038 -64519818 - B4 SINE B4 -4 288 12 5 1022 269 299 25 0 chr11 57324649 57324741 -64519115 - B1F2 SINE Alu -19 98 1 5 1022 265 281 16 0 chr11 57324678 57324742 -64519114 - ID_B1 SINE B4 -79 145 81 5 1022 550 111 35 1 chr11 57324859 57324956 -64518900 + B1_Mur4 SINE Alu 1 99 -48 5 1022 630 249 56 61 chr11 57325391 57325588 -64518268 - B3A SINE B2 -2 196 1 5 1022 251 288 55 0 chr11 57325755 57325849 -64518007 + B1F SINE Alu 1 99 -21 5 1022 289 215 31 31 chr11 57325849 57325945 -64517911 + GA-rich Low_complexity Low_complexity 1 96 0 5 1022 225 0 0 0 chr11 57326893 57326918 -64516938 + (TAA)n Simple_repeat Simple_repeat 2 26 0 5 1022 554 317 126 3 chr11 57328037 57328345 -64515511 - MER2 DNA MER2_type 0 345 2 5 1022 632 276 147 38 chr11 57328364 57328634 -64515222 - L1MD2 LINE L1 -275 6084 5781 5 1022 252 0 0 0 chr11 57328634 57328662 -64515194 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 5 1022 186 43 0 0 chr11 57328663 57328686 -64515170 + (CATA)n Simple_repeat Simple_repeat 1 23 0 5 1022 632 269 99 31 chr11 57328686 57329094 -64514762 - L1MD2 LINE L1 -579 5780 5313 5 1022 502 221 96 0 chr11 57329096 57329200 -64514656 - PB1D7 SINE Alu -6 114 1 5 1022 319 253 57 11 chr11 57329200 57329288 -64514568 - L1MD2 LINE L1 -947 5199 5108 5 1022 295 256 13 13 chr11 57329465 57329544 -64514312 - ID4 SINE ID -4 79 1 5 1022 275 319 66 86 chr11 57329829 57329848 -64514008 + B4 SINE B4 70 217 -75 5 1022 668 194 14 36 chr11 57329848 57329980 -64513876 + B1_Mur2 SINE Alu 10 140 -9 5 1022 198 0 0 0 chr11 57329980 57330002 -64513854 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1022 381 379 80 31 chr11 57330067 57330391 -64513465 + MER102b DNA MER1_type 1 340 -1 5 1022 1203 262 103 0 chr11 57330455 57330795 -64513061 + MTE2a LTR MaLR 1 375 -4 5 1022 22 0 0 0 chr11 57332600 57332622 -64511234 + GC_rich Low_complexity Low_complexity 1 22 0 5 1022 447 209 18 0 chr11 57332885 57332995 -64510861 + BC1_Mm scRNA scRNA 4 115 -37 5 1022 412 250 23 0 chr11 57333147 57333235 -64510621 + B1F1 SINE Alu 55 144 -5 5 1022 269 283 78 84 chr11 57333371 57333537 -64510319 - Charlie1a DNA MER1_type -3 1452 1288 5 1022 520 195 81 48 chr11 57333571 57333695 -64510161 + ID_B1 SINE B4 90 217 -7 5 1022 198 277 0 21 chr11 57334382 57334430 -64509426 - MIR SINE MIR -211 51 5 5 1022 1871 127 160 3 chr11 57334707 57335039 -64508817 - ORR1B1 LTR MaLR -8 386 3 5 1022 242 170 0 145 chr11 57335234 57335296 -64508560 - RSINE1 SINE B4 -1 164 112 5 1022 338 245 20 41 chr11 57335366 57335464 -64508392 - RSINE1 SINE B4 -67 98 3 5 1022 336 284 136 60 chr11 57336836 57336892 -64506964 + CYRA11_Mm Unknown Y-chromosome 122 388 -226 5 1022 932 156 120 31 chr11 57336892 57337084 -64506772 - URR1A DNA MER1_type -17 209 1 5 1022 962 150 0 7 chr11 57337277 57337425 -64506431 + B1_Mus1 SINE Alu 1 147 -1 5 1022 332 292 203 27 chr11 57338012 57338234 -64505622 - MIR SINE MIR 0 262 2 6 1022 185 356 69 10 chr11 57338346 57338448 -64505408 + L3 LINE CR1 4170 4277 -212 6 1022 1297 93 66 0 chr11 57338459 57338488 -64505368 - B2_Mm2 SINE B2 0 195 155 6 1022 288 0 0 0 chr11 57338488 57338520 -64505336 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1022 1297 93 66 0 chr11 57338520 57338673 -64505183 - B2_Mm2 SINE B2 -41 154 2 6 1022 208 366 110 27 chr11 57341115 57341261 -64502595 - MIR3 SINE MIR -21 187 30 6 1022 307 209 45 0 chr11 57341899 57341966 -64501890 + ID4 SINE ID 1 70 -13 6 1022 31 0 0 0 chr11 57342022 57342053 -64501803 + AT_rich Low_complexity Low_complexity 1 31 0 6 1022 928 245 51 47 chr11 57342210 57342467 -64501389 - MTE2a LTR MaLR -2 405 157 6 1022 610 175 151 0 chr11 57344270 57344396 -64499460 + B1_Mur3 SINE Alu 5 149 0 6 1022 386 275 0 56 chr11 57345815 57345923 -64497933 + ID_B1 SINE B4 78 179 -45 6 1022 592 209 0 0 chr11 57345830 57345935 -64497921 + PB1D10 SINE Alu 6 110 -7 6 1022 501 309 0 8 chr11 57346664 57346788 -64497068 - B1F1 SINE Alu -26 123 1 6 1022 402 304 8 60 chr11 57346788 57346824 -64497032 - ID SINE ID -146 78 50 6 1022 1022 195 77 5 chr11 57347401 57347597 -64496259 - B3 SINE B2 -6 210 1 6 1022 941 195 92 79 chr11 57348884 57349201 -64494655 - MTEa LTR MaLR -7 372 52 6 1022 2832 53 3 0 chr11 57349882 57350223 -64493633 - ORR1A1 LTR MaLR -4 342 1 6 1022 1287 192 110 55 chr11 57350925 57351234 -64492622 + ORR1D1 LTR MaLR 5 330 -44 6 1022 390 239 80 9 chr11 57351478 57351588 -64492268 + B4 SINE B4 1 117 -175 6 1022 197 391 11 0 chr11 57351727 57351819 -64492037 + L2a LINE L2 3295 3387 -39 6 1022 191 330 40 50 chr11 57351867 57351966 -64491890 + MIR SINE MIR 75 172 -90 6 1022 614 167 20 132 chr11 57352084 57352236 -64491620 - B1_Mur4 SINE Alu 0 150 16 6 1022 1280 103 11 0 chr11 57352287 57352471 -64491385 - B2_Mm1t SINE B2 -7 186 1 6 1022 3984 52 34 12 chr11 57352568 57353069 -64490787 + RLTR1B LTR ERV1 1 512 0 6 1022 751 309 21 0 chr11 57353117 57353305 -64490551 + ID_B1 SINE B4 32 223 -1 6 1022 365 215 0 11 chr11 57353305 57353399 -64490457 + GA-rich Low_complexity Low_complexity 1 93 0 6 1022 994 147 209 0 chr11 57354939 57355116 -64488740 - B3 SINE B2 -2 214 1 6 1022 1107 280 245 34 chr11 57355390 57356011 -64487845 - RMER1C Other Other -13 1329 578 6 1022 381 280 51 36 chr11 57356234 57356335 -64487521 - RMER1B Other Other -926 140 41 6 1022 4298 56 40 9 chr11 57356335 57356878 -64486978 - LTRIS2 LTR ERV1 0 564 5 6 1022 381 280 51 36 chr11 57356878 57356913 -64486943 - RMER1B Other Other -1026 40 2 6 1022 865 171 29 0 chr11 57357408 57357548 -64486308 - B1_Mur3 SINE Alu -1 148 5 6 1022 26 0 0 0 chr11 57357555 57357581 -64486275 + AT_rich Low_complexity Low_complexity 1 26 0 6 1022 736 236 14 0 chr11 57357600 57357748 -64486108 - RSINE1 SINE B4 -13 152 3 6 1022 823 160 8 0 chr11 57358343 57358474 -64485382 + B1_Mus2 SINE Alu 10 141 -6 6 1022 184 30 61 0 chr11 57358498 57358531 -64485325 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1022 743 217 0 73 chr11 57358566 57358730 -64485126 - RLTR20C LTR ERVK 0 578 427 6 1022 1145 177 105 78 chr11 57358730 57359036 -64484820 - RLTR20C LTR ERVK -220 314 1 6 1022 377 330 42 21 chr11 57359044 57359236 -64484620 - MLT1C LTR MaLR -71 396 201 6 1022 237 303 48 95 chr11 57359238 57359322 -64484534 + ID_B1 SINE B4 65 144 -80 6 1022 1189 86 80 0 chr11 57359373 57359535 -64484321 + B2_Mm2 SINE B2 2 176 -19 6 1022 931 141 0 17 chr11 57359537 57359710 -64484146 + GA-rich Low_complexity Low_complexity 3 172 0 6 1022 380 223 89 15 chr11 57359715 57359850 -64484006 - MLT1C LTR MaLR -305 162 7 6 1022 230 102 17 155 chr11 57361039 57361097 -64482759 + 4.5SRNA scRNA scRNA 37 86 -8 6 1022 577 131 91 0 chr11 57361048 57361147 -64482709 + B1_Mur4 SINE Alu 43 150 0 6 1022 220 326 216 25 chr11 57361152 57361467 -64482389 + L2a LINE L2 2425 2799 -620 6 1022 251 306 14 0 chr11 57361473 57361545 -64482311 + MER5B DNA MER1_type 17 89 -89 6 1022 269 286 51 25 chr11 57361572 57361651 -64482205 + L2a LINE L2 2814 2894 -525 6 1022 187 359 108 13 chr11 57361816 57361974 -64481882 + L2a LINE L2 2912 3084 -291 6 1022 670 263 81 27 chr11 57362043 57362266 -64481590 + B4A SINE B4 15 249 -43 6 1022 280 327 93 23 chr11 57362324 57362540 -64481316 + L2a LINE L2 3179 3409 -17 6 1022 825 198 52 26 chr11 57363823 57364015 -64479841 + B3A SINE B2 2 198 0 6 1022 296 246 0 0 chr11 57365532 57365593 -64478263 + B4A SINE B4 2 62 -230 6 1022 479 321 22 0 chr11 57366245 57366379 -64477477 + B4 SINE B4 89 225 -67 6 1022 211 280 0 0 chr11 57366401 57366451 -64477405 + B4 SINE B4 24 73 -219 6 1022 230 143 55 109 chr11 57366484 57366539 -64477317 + B4 SINE B4 214 265 -27 6 1022 235 267 47 37 chr11 57366818 57366933 -64476923 + MIR SINE MIR 54 165 -103 6 1022 840 228 143 16 chr11 57366990 57367248 -64476608 - B4 SINE B4 0 292 2 6 1022 604 312 34 34 chr11 57367590 57367675 -64476181 + MER58A DNA MER1_type 7 90 -134 6 1022 2425 84 15 9 chr11 57367675 57368000 -64475856 + ORR1A2 LTR MaLR 1 327 0 6 1022 604 312 34 34 chr11 57368000 57368120 -64475736 + MER58A DNA MER1_type 91 212 -12 6 1022 309 322 16 65 chr11 57368096 57368219 -64475637 + ID_B1 SINE B4 60 176 -48 6 1022 470 230 0 11 chr11 57368137 57368225 -64475631 + B1F SINE Alu 17 103 -46 6 1022 4220 63 40 9 chr11 57368226 57368769 -64475087 - LTRIS2 LTR ERV1 0 564 5 6 1022 921 235 17 13 chr11 57368772 57369005 -64474851 - RLTR1B-int LTR ERV1 -42 5021 4788 6 1022 1166 220 61 16 chr11 57369090 57369503 -64474353 - RLTR1B-int LTR ERV1 -486 2813 2669 6 1022 9012 132 97 60 chr11 57369490 57371759 -64472097 - RLTR1B-int LTR ERV1 -744 2555 760 6 1022 4378 144 40 17 chr11 57371750 57372475 -64471381 - RMER16-int LTR ERVK -3962 1444 703 6 1022 207 0 0 0 chr11 57372475 57372498 -64471358 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1022 942 130 67 18 chr11 57372502 57372666 -64471190 - RMER16-int LTR ERVK -5093 313 142 6 1022 1068 134 24 61 chr11 57373016 57373282 -64470574 - RLTR1B-int LTR ERV1 -3011 288 60 6 1022 296 207 25 75 chr11 57373308 57373428 -64470428 - RLTR1B-int LTR ERV1 -3584 114 1 6 1022 4243 61 40 9 chr11 57373428 57373971 -64469885 - LTRIS2 LTR ERV1 0 564 5 6 1022 800 182 7 14 chr11 57374050 57374195 -64469661 - B1_Mur3 SINE Alu -1 148 5 6 1022 23 68 0 0 chr11 57374231 57374275 -64469581 + AT_rich Low_complexity Low_complexity 1 44 0 6 1022 837 253 22 17 chr11 57374282 57374463 -64469393 - B3A SINE B2 -16 182 1 6 1022 225 0 0 0 chr11 57374479 57374504 -64469352 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 6 1022 452 219 62 0 chr11 57374511 57374607 -64469249 - B1F2 SINE Alu -5 144 43 6 1022 219 69 0 0 chr11 57374607 57374636 -64469220 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1022 2986 75 5 12 chr11 57374641 57375048 -64468808 - L1_Mus1 LINE L1 0 6567 6164 6 1022 212 0 0 35 chr11 57375469 57375498 -64468358 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6 1022 466 188 62 0 chr11 57375498 57375594 -64468262 - PB1D10 SINE Alu -11 106 5 6 1022 4279 90 157 9 chr11 57375594 57376236 -64467620 - RMER19A LTR ERVK 0 737 1 6 1022 387 247 22 0 chr11 57376236 57376325 -64467531 - ID_B1 SINE B4 -133 91 1 6 1022 426 296 100 75 chr11 57376325 57376530 -64467326 + MER113 DNA MER1_type 267 477 -44 6 1022 517 110 70 22 chr11 57376579 57376853 -64467003 + (CA)n Simple_repeat Simple_repeat 1 287 0 6 1022 1188 228 52 56 chr11 57377473 57377742 -64466114 + B4 SINE B4 2 269 -23 6 1022 450 79 0 0 chr11 57377743 57377806 -64466050 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1022 2702 237 42 43 chr11 57378126 57378830 -64465026 + RCHARR1 DNA MER1_type 109 817 -157 6 1022 1555 43 5 0 chr11 57378830 57379014 -64464842 + B2_Mm1a SINE B2 2 186 -7 6 1022 2702 237 42 43 chr11 57379014 57379054 -64464802 + RCHARR1 DNA MER1_type 818 852 -122 6 1022 412 209 16 4 chr11 57379054 57379141 -64464715 + RSINE1 SINE B4 2 88 -204 6 1022 341 205 43 86 chr11 57379146 57379285 -64464571 + RCHARR1 DNA MER1_type 826 958 -16 6 1022 325 284 211 0 chr11 57379383 57379492 -64464364 - MIRc SINE MIR -118 150 19 6 1022 218 251 23 0 chr11 57379541 57379593 -64464263 - Alu_5 SINE Alu -74 53 1 6 1022 180 176 0 0 chr11 57379653 57379687 -64464169 + CT-rich Low_complexity Low_complexity 1 34 0 6 1022 319 254 0 0 chr11 57379692 57379759 -64464097 - ID4_ SINE ID -12 71 5 6 1022 450 0 0 0 chr11 57380174 57380224 -64463632 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1022 426 159 0 0 chr11 57380754 57380823 -64463033 - ORR1D2 LTR MaLR 0 370 302 6 1022 544 107 28 6 chr11 57380809 57380909 -64462947 + B1_Mur4 SINE Alu 47 148 -2 6 1022 1385 245 50 33 chr11 57380878 57381234 -64462622 - ORR1D2 LTR MaLR -21 363 1 6 1022 273 238 97 13 chr11 57381234 57381273 -64462583 - B4 SINE B4 -29 263 149 6 1022 239 178 329 0 chr11 57381273 57381346 -64462510 - PB1D9 SINE Alu -7 113 17 6 1022 273 238 97 13 chr11 57381346 57381371 -64462485 - B4 SINE B4 -27 148 71 6 1022 254 269 76 13 chr11 57381691 57381770 -64462086 + RMER5 LTR ERV1 41 124 -410 6 1022 301 307 70 0 chr11 57381796 57381910 -64461946 - B3A SINE B2 -75 123 2 6 1022 489 323 13 19 chr11 57381947 57382105 -64461751 + RMER5 LTR ERV1 220 376 -158 6 1022 3412 18 26 0 chr11 57382177 57382563 -64461293 - MTA_Mm LTR MaLR 0 396 1 6 1022 1199 284 46 46 chr11 57382635 57382871 -64460985 - ORR1E LTR MaLR -8 351 114 6 1022 3020 142 99 39 chr11 57382871 57383515 -64460341 + RMER6C LTR ERVK 4 686 -4 6 1022 1199 284 46 46 chr11 57383515 57383629 -64460227 - ORR1E LTR MaLR -246 113 1 6 1022 1632 233 27 22 chr11 57384156 57384525 -64459331 - MTEb LTR MaLR 0 379 9 6 1022 227 306 0 16 chr11 57384855 57384918 -64458938 - L3 LINE CR1 -6 4483 4422 6 1022 382 266 127 67 chr11 57385171 57385336 -64458520 + MER102b DNA MER1_type 67 241 -100 6 1022 1409 221 14 101 chr11 57386167 57386581 -64457275 + ORR1C2 LTR MaLR 6 383 -1 6 1022 287 305 0 0 chr11 57386605 57386664 -64457192 + ID4_ SINE ID 22 80 -3 6 1022 825 243 26 31 chr11 57386685 57386880 -64456976 + B4A SINE B4 1 194 -98 6 1022 248 118 0 0 chr11 57386875 57386909 -64456947 - ID_B1 SINE B4 -61 163 130 6 1022 964 242 107 64 chr11 57387872 57388199 -64455657 + RMER15 LTR ERVL 231 571 -4 6 1022 501 261 148 62 chr11 57388404 57388661 -64455195 - B4A SINE B4 -11 281 3 6 1022 1237 95 5 43 chr11 57388773 57388936 -64454920 + B2_Mm2 SINE B2 2 164 -31 6 1022 5731 77 41 117 chr11 57388936 57389141 -64454715 + RLTR13B1 LTR ERVK 1 199 -694 7 1022 1611 62 0 0 chr11 57389141 57389333 -64454523 - B2_Mm1t SINE B2 0 193 2 7 1022 5731 77 41 117 chr11 57389333 57389677 -64454179 + RLTR13B1 LTR ERVK 200 466 -427 7 1022 504 0 0 0 chr11 57389677 57389733 -64454123 + (CATA)n Simple_repeat Simple_repeat 1 56 0 7 1022 5731 77 41 117 chr11 57389733 57390148 -64453708 + RLTR13B1 LTR ERVK 467 892 -1 7 1022 1237 95 5 43 chr11 57390148 57390171 -64453685 + B2_Mm2 SINE B2 165 181 -14 6 1022 290 354 77 44 chr11 57390244 57390427 -64453429 - B3A SINE B2 0 198 10 7 1022 550 290 42 28 chr11 57390292 57390434 -64453422 - RSINE1 SINE B4 -18 147 4 7 1022 222 348 58 42 chr11 57390460 57390580 -64453276 + MIR SINE MIR 125 246 -16 7 1022 7859 18 0 0 chr11 57391142 57392017 -64451839 + L1Md_F2 LINE L1 5700 6574 -8 7 1022 762 81 0 0 chr11 57392054 57392153 -64451703 + B1_Mus1 SINE Alu 39 137 -11 7 1022 1302 86 21 36 chr11 57392176 57392370 -64451486 + B2_Mm2 SINE B2 1 191 -4 7 1022 1238 61 0 0 chr11 57392373 57392520 -64451336 + B1_Mus1 SINE Alu 2 148 0 7 1022 193 120 39 20 chr11 57392709 57392760 -64451096 + A-rich Low_complexity Low_complexity 3 54 0 7 1022 1395 84 11 0 chr11 57393107 57393297 -64450559 + B2_Mm1t SINE B2 2 193 0 7 1022 1225 62 0 0 chr11 57393299 57393445 -64450411 + B1_Mus2 SINE Alu 2 147 0 7 1022 180 0 0 0 chr11 57393445 57393465 -64450391 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1022 876 227 28 0 chr11 57393744 57393920 -64449936 + B3A SINE B2 5 185 -13 7 1022 26 0 0 0 chr11 57393933 57393959 -64449897 + AT_rich Low_complexity Low_complexity 1 26 0 7 1022 229 254 53 53 chr11 57394164 57394239 -64449617 - MTD LTR MaLR -182 237 163 7 1022 801 274 74 89 chr11 57394305 57394361 -64449495 + B4A SINE B4 40 84 -208 7 1022 1222 66 84 0 chr11 57394361 57394528 -64449328 + B2_Mm2 SINE B2 1 181 -14 7 1022 801 274 74 89 chr11 57394528 57394728 -64449128 + B4A SINE B4 85 292 0 7 1022 252 0 0 0 chr11 57395521 57395549 -64448307 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1022 446 120 301 11 chr11 57395549 57395642 -64448214 - PB1D9 SINE Alu 0 120 1 7 1022 777 266 79 39 chr11 57395643 57395743 -64448113 + MTD LTR MaLR 51 149 -270 7 1022 1893 148 53 33 chr11 57395743 57396141 -64447715 + RMER17C LTR ERVK 2 407 -3 7 1022 777 232 52 97 chr11 57396141 57396359 -64447497 + MTD LTR MaLR 150 418 -1 7 1022 453 36 0 0 chr11 57397011 57397066 -64446790 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1022 286 231 0 44 chr11 57397754 57397822 -64446034 - B4 SINE B4 -17 275 211 7 1022 817 258 19 22 chr11 57397828 57398048 -64445808 - B3 SINE B2 -2 214 4 7 1022 246 32 0 0 chr11 57398180 57398211 -64445645 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1022 1065 87 0 0 chr11 57398213 57398351 -64445505 - B1_Mus1 SINE Alu -7 141 4 7 1022 312 279 149 7 chr11 57398646 57398787 -64445069 + RMER5 LTR ERV1 70 230 -304 7 1022 3968 157 147 29 chr11 57398850 57399644 -64444212 + RMER19B LTR ERVK 1 888 -14 7 1022 227 278 0 53 chr11 57399652 57399709 -64444147 - B4 SINE B4 -158 134 81 7 1022 1229 61 0 0 chr11 57399727 57399874 -64443982 - B1_Mus2 SINE Alu 0 147 1 7 1022 298 265 115 50 chr11 57400102 57400241 -64443615 + RMER5 LTR ERV1 356 503 -31 7 1022 459 0 0 0 chr11 57400406 57400457 -64443399 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1022 441 0 0 0 chr11 57400457 57400505 -64443351 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1022 431 259 113 4 chr11 57401062 57401197 -64442659 + ID_B1 SINE B4 65 208 -16 7 1022 517 228 43 86 chr11 57401763 57401926 -64441930 + RMER5 LTR ERV1 368 523 -11 7 1022 209 368 27 81 chr11 57401938 57402086 -64441770 + L2a LINE L2 3282 3421 -5 7 1022 21 0 0 0 chr11 57402194 57402215 -64441641 + AT_rich Low_complexity Low_complexity 1 21 0 7 1022 389 145 0 46 chr11 57402220 57402285 -64441571 + B1_Mur4 SINE Alu 2 63 -87 7 1022 4538 158 111 4 chr11 57402681 57403493 -64440363 - RMER19B LTR ERVK -3 899 1 7 1022 1071 232 130 18 chr11 57403746 57404071 -64439785 + MTE2b LTR MaLR 1 351 -28 7 1022 758 214 27 20 chr11 57404100 57404248 -64439608 - B1_Mur2 SINE Alu 0 149 1 7 1022 568 235 62 170 chr11 57404250 57404491 -64439365 + MTE2a LTR MaLR 4 218 -161 7 1022 664 268 67 6 chr11 57404502 57404682 -64439174 - B3 SINE B2 -5 211 21 7 1022 431 286 242 14 chr11 57404695 57404738 -64439118 - B4A SINE B4 -18 274 224 7 1022 216 0 0 0 chr11 57404738 57404762 -64439094 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1022 431 286 242 14 chr11 57404762 57404941 -64438915 - B4A SINE B4 -69 223 3 7 1022 187 165 30 0 chr11 57405519 57405559 -64438297 + MIRc SINE MIR 81 121 -155 7 1022 43 103 0 0 chr11 57405559 57405714 -64438142 + AT_rich Low_complexity Low_complexity 1 155 0 7 1022 641 265 22 7 chr11 57405741 57405878 -64437978 - RSINE1 SINE B4 -24 141 3 7 1022 1296 252 77 15 chr11 57406216 57406554 -64437302 - ORR1E LTR MaLR 0 359 1 7 1022 789 11 0 0 chr11 57406804 57406894 -64436962 + (CTTG)n Simple_repeat Simple_repeat 1 90 0 7 1022 829 182 0 53 chr11 57406895 57407046 -64436810 - B1_Mur4 SINE Alu -6 144 2 7 1022 672 236 8 0 chr11 57407486 57407613 -64436243 + RSINE1 SINE B4 3 130 -35 7 1022 237 132 0 0 chr11 57407666 57407704 -64436152 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 7 1022 874 252 26 61 chr11 57408042 57408270 -64435586 - ID_B1 SINE B4 -3 221 2 7 1022 1334 61 0 11 chr11 57408502 57408684 -64435172 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1022 1152 64 50 25 chr11 57408699 57408713 -64435143 - B2_Mm2 SINE B2 -29 166 154 7 1022 393 22 0 0 chr11 57408713 57408759 -64435097 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1022 1152 64 50 25 chr11 57408759 57408905 -64434951 - B2_Mm2 SINE B2 -42 153 2 7 1022 563 171 78 91 chr11 57409227 57409381 -64434475 + B3A SINE B2 1 152 -46 7 1022 180 0 0 0 chr11 57409382 57409402 -64434454 + (CG)n Simple_repeat Simple_repeat 2 21 0 7 1022 225 0 0 0 chr11 57409402 57409426 -64434430 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1023 222 200 22 0 chr11 57409692 57409737 -64434119 + L3 LINE CR1 4041 4086 -403 7 1023 369 53 0 0 chr11 57409982 57410035 -64433821 + B1_Mur4 SINE Alu 89 144 -6 7 1023 839 247 0 0 chr11 57410061 57410205 -64433651 + RSINE1 SINE B4 4 147 -18 7 1023 1464 129 17 63 chr11 57410205 57410532 -64433324 - ORR1A4 LTR MaLR 0 374 93 7 1023 1123 124 5 31 chr11 57410679 57410871 -64432985 + B2_Mm2 SINE B2 2 188 -7 7 1023 1369 87 0 47 chr11 57410881 57411074 -64432782 + B2_Mm2 SINE B2 2 185 -10 7 1023 1250 41 0 20 chr11 57411083 57411232 -64432624 + B1_Mm SINE Alu 2 147 0 7 1023 958 250 53 64 chr11 57411368 57411727 -64432129 - ORR1E LTR MaLR -4 355 1 7 1023 465 282 0 25 chr11 57412108 57412228 -64431628 + PB1D10 SINE Alu 1 117 0 7 1023 374 257 26 103 chr11 57412569 57412609 -64431247 + RLTR14 LTR ERV1 225 261 -121 7 1023 1308 154 18 22 chr11 57412609 57412835 -64431021 + URR1B DNA MER1_type 1 225 0 7 1023 374 257 26 103 chr11 57412835 57412950 -64430906 + RLTR14 LTR ERV1 262 368 -14 7 1023 465 260 9 28 chr11 57413181 57413288 -64430568 + B4 SINE B4 7 111 -181 7 1023 231 268 63 17 chr11 57413536 57413711 -64430145 + RMER17D LTR ERVK 349 531 -358 7 1023 381 308 44 29 chr11 57414016 57414153 -64429703 - ID_B1 SINE B4 0 224 86 7 1023 315 0 0 0 chr11 57414754 57414789 -64429067 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1023 251 206 274 0 chr11 57415067 57415140 -64428716 + PB1D10 SINE Alu 17 109 -8 7 1023 291 328 59 17 chr11 57415243 57415361 -64428495 + MIRb SINE MIR 4 126 -142 7 1023 343 288 36 0 chr11 57415430 57415541 -64428315 + L2a LINE L2 3312 3426 0 7 1023 306 286 43 134 chr11 57415559 57415745 -64428111 + MLT1A0 LTR MaLR 1 169 -196 7 1023 1070 267 64 115 chr11 57415857 57416230 -64427626 - MTEa LTR MaLR 0 379 26 7 1023 334 300 76 103 chr11 57416368 57416513 -64427343 - MIRb SINE MIR -5 263 123 7 1023 251 359 68 30 chr11 57417055 57417187 -64426669 - MIR3 SINE MIR -33 175 39 7 1023 344 231 12 37 chr11 57417950 57418031 -64425825 + HAL1-3A_ME LINE L1 1958 2036 -822 7 1023 460 244 101 0 chr11 57418091 57418104 -64425752 + B1F SINE Alu 10 140 -9 7 1023 625 189 38 0 chr11 57418104 57418210 -64425646 + ID_B1 SINE B4 106 215 -9 7 1023 256 83 42 0 chr11 57418215 57418263 -64425593 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1023 200 216 0 0 chr11 57418263 57418300 -64425556 + (CATA)n Simple_repeat Simple_repeat 2 38 0 7 1023 273 315 76 84 chr11 57418960 57419177 -64424679 - L2b LINE L2 -42 3345 3106 7 1023 965 174 7 0 chr11 57419676 57419825 -64424031 - B1_Mur4 SINE Alu 0 150 1 7 1023 880 156 0 11 chr11 57420522 57420704 -64423152 + CT-rich Low_complexity Low_complexity 1 180 0 7 1023 21 0 0 0 chr11 57420742 57420763 -64423093 + AT_rich Low_complexity Low_complexity 1 21 0 7 1023 216 228 158 0 chr11 57420790 57420847 -64423009 - MIRc SINE MIR -121 147 82 7 1023 242 0 61 0 chr11 57421419 57421452 -64422404 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1023 835 114 45 22 chr11 57421455 57421589 -64422267 - B1_Mus2 SINE Alu -6 141 5 7 1023 615 265 200 44 chr11 57421736 57422096 -64421760 + MTD LTR MaLR 2 417 -2 7 1023 529 248 50 0 chr11 57422394 57422535 -64421321 - B1F SINE Alu -1 148 1 7 1023 1324 79 16 16 chr11 57422591 57422783 -64421073 - B2_Mm1t SINE B2 0 193 2 7 1023 461 251 41 98 chr11 57422817 57423071 -64420785 - RLTR11A2 LTR ERVK -46 482 242 7 1023 1045 208 29 50 chr11 57423064 57423342 -64420514 - RLTR11A2 LTR ERVK -253 274 3 7 1023 198 208 0 0 chr11 57423361 57423409 -64420447 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1023 700 276 5 126 chr11 57423409 57423616 -64420240 - B3A SINE B2 -16 182 1 8 1023 1178 86 0 5 chr11 57423947 57424161 -64419695 + (TG)n Simple_repeat Simple_repeat 1 212 0 8 1023 746 313 65 8 chr11 57424170 57424415 -64419441 - B4A SINE B4 -31 261 3 8 1023 565 202 10 0 chr11 57424424 57424528 -64419328 - PB1D10 SINE Alu -1 116 12 8 1023 338 240 229 46 chr11 57424528 57424555 -64419301 - ID_B1 SINE B4 -1 223 69 8 1023 359 354 41 20 chr11 57424586 57424733 -64419123 + MLT1E LTR MaLR 314 463 -190 8 1023 272 344 64 87 chr11 57425423 57425687 -64418169 - B4A SINE B4 0 292 35 8 1023 1213 62 0 0 chr11 57425830 57425976 -64417880 + B1_Mus2 SINE Alu 2 147 0 8 1023 253 217 12 12 chr11 57426057 57426141 -64417715 + (CA)n Simple_repeat Simple_repeat 2 85 0 8 1023 359 176 80 13 chr11 57426141 57426216 -64417640 + HAL1-3A_ME LINE L1 1976 2055 -803 8 1023 360 139 0 0 chr11 57427159 57427238 -64416618 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 1023 190 350 65 32 chr11 57427884 57428008 -64415848 - MIRb SINE MIR -38 230 103 8 1023 457 299 52 7 chr11 57428010 57428145 -64415711 + ID_B1 SINE B4 84 224 0 8 1023 669 261 0 14 chr11 57428641 57428785 -64415071 - RSINE1 SINE B4 -13 152 11 8 1023 360 133 0 0 chr11 57429163 57429223 -64414633 + (GGA)n Simple_repeat Simple_repeat 3 62 0 8 1023 316 286 0 0 chr11 57429235 57429305 -64414551 + polypurine Low_complexity Low_complexity 1 70 0 8 1023 234 254 157 30 chr11 57430066 57430200 -64413656 - L2c LINE L2 -7 3380 3230 8 1023 486 75 0 0 chr11 57430336 57430403 -64413453 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 1023 577 289 37 0 chr11 57430413 57430548 -64413308 - RSINE1 SINE B4 -23 142 3 8 1023 302 287 21 11 chr11 57430557 57430652 -64413204 - MIR SINE MIR -113 149 54 8 1023 774 278 18 31 chr11 57430729 57430952 -64412904 - ID_B1 SINE B4 0 224 5 8 1023 3305 134 55 29 chr11 57432117 57432699 -64411157 - RMER1B Other Other -48 1018 422 8 1023 612 242 373 21 chr11 57432703 57432986 -64410870 - RMER15 LTR ERVL -147 428 47 8 1023 360 164 0 0 chr11 57432986 57433053 -64410803 + CT-rich Low_complexity Low_complexity 3 69 0 8 1023 2592 163 22 37 chr11 57433185 57433720 -64410136 + RLTR11A2 LTR ERVK 1 527 0 8 1023 515 312 130 5 chr11 57433746 57433962 -64409894 + MLT1K LTR MaLR 151 393 -202 8 1023 2084 187 3 36 chr11 57433966 57434009 -64409847 - MTEb LTR MaLR -2 377 338 8 1023 2406 114 0 15 chr11 57434009 57434339 -64409517 + ORR1A4 LTR MaLR 5 329 0 8 1023 2084 187 3 36 chr11 57434339 57434684 -64409172 - MTEb LTR MaLR -42 337 2 8 1023 847 264 86 62 chr11 57435147 57435486 -64408370 - ORR1E LTR MaLR -6 353 7 8 1023 483 280 153 18 chr11 57435523 57435752 -64408104 - MLT1D LTR MaLR -140 365 106 8 1023 183 42 0 0 chr11 57435767 57435791 -64408065 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 1023 344 211 53 53 chr11 57436201 57436296 -64407560 - B4A SINE B4 -44 248 154 8 1023 348 127 0 0 chr11 57436310 57436365 -64407491 + (GGGGA)n Simple_repeat Simple_repeat 2 56 0 8 1023 549 231 117 22 chr11 57436365 57436502 -64407354 - B4 SINE B4 -136 156 7 8 1023 270 0 0 0 chr11 57436536 57436566 -64407290 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 8 1023 282 147 0 42 chr11 57436572 57436643 -64407213 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 8 1023 372 218 75 5 chr11 57436643 57436751 -64407105 - B1_Mur2 SINE Alu -1 148 20 8 1023 696 228 14 22 chr11 57436938 57437077 -64406779 - B1_Mur1 SINE Alu -5 144 7 8 1023 292 307 0 122 chr11 57436978 57437093 -64406763 - MT2B LTR ERVL -344 257 157 8 1023 1262 289 107 10 chr11 57437172 57437658 -64406198 - RMER5 LTR ERV1 0 534 2 8 1023 535 277 104 68 chr11 57438529 57438808 -64405048 - B4A SINE B4 0 292 4 8 1023 465 134 20 20 chr11 57438810 57438909 -64404947 + CT-rich Low_complexity Low_complexity 3 101 0 8 1023 763 207 30 0 chr11 57439173 57439308 -64404548 + RSINE1 SINE B4 3 141 -24 8 1023 375 60 0 0 chr11 57439308 57439358 -64404498 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1023 498 307 39 13 chr11 57439622 57439777 -64404079 + RSINE1 SINE B4 3 161 -4 8 1023 254 146 0 0 chr11 57439879 57439920 -64403936 - MIR SINE MIR -78 130 90 8 1023 283 338 102 66 chr11 57440228 57440472 -64403384 - MER115 DNA Tip100 -1 692 440 8 1023 491 0 17 0 chr11 57440473 57440532 -64403324 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1023 701 148 48 32 chr11 57440540 57440666 -64403190 - B1_Mur4 SINE Alu -20 130 3 8 1023 299 226 74 81 chr11 57440666 57440713 -64403143 - MT2B2 LTR ERVL -422 162 117 8 1023 360 0 0 0 chr11 57441089 57441129 -64402727 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1023 380 225 1 13 chr11 57441206 57441295 -64402561 + B4 SINE B4 17 103 -189 8 1023 205 345 107 88 chr11 57441562 57441823 -64402033 - L2c LINE L2 -38 3349 3084 8 1023 378 276 0 0 chr11 57441826 57441902 -64401954 + B4 SINE B4 5 80 -212 8 1023 731 251 81 10 chr11 57441901 57442098 -64401758 - B3 SINE B2 -5 211 1 8 1023 398 299 25 17 chr11 57442165 57442284 -64401572 + B4 SINE B4 168 287 -5 8 1023 465 19 0 0 chr11 57442318 57442372 -64401484 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1023 439 359 27 53 chr11 57443216 57443478 -64400378 + MIRb SINE MIR 5 259 -9 8 1023 303 315 0 27 chr11 57443612 57443687 -64400169 + ID SINE ID 6 78 -146 8 1023 364 212 151 40 chr11 57443741 57443949 -64399907 + B4A SINE B4 7 265 -27 8 1023 378 0 0 0 chr11 57443966 57444008 -64399848 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1023 408 206 120 0 chr11 57444126 57444218 -64399638 + PB1D10 SINE Alu 1 103 -14 8 1023 1968 128 98 6 chr11 57444315 57444662 -64399194 - ORR1B1 LTR MaLR 0 394 16 8 1023 324 70 0 0 chr11 57445345 57445388 -64398468 + (TGGGGG)n Simple_repeat Simple_repeat 4 46 0 8 1023 331 187 0 62 chr11 57445670 57445750 -64398106 - B1F SINE Alu -66 83 9 8 1023 261 182 15 29 chr11 57445701 57445769 -64398087 - ID_B1 SINE B4 -86 138 72 8 1023 359 205 0 74 chr11 57446307 57446402 -64397454 - ID_B1 SINE B4 -1 223 136 8 1023 672 162 0 8 chr11 57446759 57446877 -64396979 + B3 SINE B2 1 117 -99 8 1023 883 221 157 0 chr11 57446870 57447087 -64396769 + MTD LTR MaLR 169 419 0 8 1023 824 229 30 46 chr11 57447087 57447284 -64396572 - B3 SINE B2 -22 194 1 8 1023 617 0 14 0 chr11 57447293 57447366 -64396490 + (TC)n Simple_repeat Simple_repeat 1 74 0 8 1023 270 0 0 0 chr11 57447366 57447395 -64396461 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1023 351 0 0 0 chr11 57447395 57447434 -64396422 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1023 293 269 84 92 chr11 57447439 57447558 -64396298 - ID_B1 SINE B4 -25 199 82 8 1023 1225 61 0 0 chr11 57448077 57448224 -64395632 + B1_Mus2 SINE Alu 1 147 0 8 1023 780 225 142 80 chr11 57449445 57449720 -64394136 - MTD LTR MaLR -15 404 113 8 1023 30798 62 17 2 chr11 57449723 57454823 -64389033 + L1Md_F2 LINE L1 410 5586 -297 8 1023 8663 31 1 1 chr11 57454824 57455817 -64388039 + L1Md_F2 LINE L1 5588 6580 -2 8 1023 527 283 6 51 chr11 57455974 57456149 -64387707 - B4A SINE B4 -124 168 2 8 1023 310 250 0 12 chr11 57456304 57456385 -64387471 + L1M4 LINE L1 5705 5784 -400 8 1023 390 241 255 54 chr11 57456388 57456647 -64387209 - RMER15 LTR ERVL -3 572 262 8 1023 1375 106 0 6 chr11 57456682 57456863 -64386993 - B2_Mm2 SINE B2 -14 181 2 8 1023 21 0 0 0 chr11 57456970 57456991 -64386865 + AT_rich Low_complexity Low_complexity 1 21 0 8 1023 23 33 0 0 chr11 57457031 57457061 -64386795 + AT_rich Low_complexity Low_complexity 1 30 0 8 1023 657 268 9 114 chr11 57457061 57457280 -64386576 - B3A SINE B2 -2 196 1 8 1023 196 238 106 12 chr11 57457368 57457453 -64386403 - L2a LINE L2 -381 3045 2953 8 1023 189 0 0 0 chr11 57458049 57458070 -64385786 + (CACCC)n Simple_repeat Simple_repeat 1 21 0 8 1023 28 29 0 0 chr11 57459025 57459060 -64384796 + GC_rich Low_complexity Low_complexity 1 35 0 8 1023 191 375 73 0 chr11 57459321 57459417 -64384439 - MIRm SINE MIR -125 151 49 8 1023 1124 54 7 0 chr11 57459697 57459845 -64384011 + (TTCTC)n Simple_repeat Simple_repeat 1 149 0 8 1023 216 0 0 0 chr11 57459847 57459871 -64383985 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 8 1023 828 217 48 16 chr11 57459871 57460058 -64383798 - B3 SINE B2 -16 200 8 8 1023 221 180 20 0 chr11 57460309 57460359 -64383497 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1023 804 21 0 0 chr11 57461412 57461506 -64382350 + (GA)n Simple_repeat Simple_repeat 2 95 0 8 1023 484 248 149 0 chr11 57462001 57462142 -64381714 + ID_B1 SINE B4 8 169 -55 8 1023 370 247 54 0 chr11 57462066 57462159 -64381697 + PB1D10 SINE Alu 12 109 -8 8 1023 209 305 0 0 chr11 57463024 57463083 -64380773 + MIRc SINE MIR 88 146 -122 8 1023 335 220 19 57 chr11 57463838 57463944 -64379912 - MIR3 SINE MIR -8 200 99 8 1023 606 332 40 40 chr11 57465395 57465668 -64378188 + B4A SINE B4 1 273 -19 8 1023 217 304 0 0 chr11 57465701 57465757 -64378099 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1023 219 333 111 0 chr11 57467356 57467464 -64376392 - MIR SINE MIR -70 138 19 8 1023 261 57 0 0 chr11 57467768 57467803 -64376053 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1023 497 289 103 36 chr11 57467984 57468178 -64375678 - B4 SINE B4 0 292 86 8 1023 441 36 0 0 chr11 57468186 57468241 -64375615 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 1023 420 71 0 0 chr11 57468293 57468349 -64375507 + (CCCCCT)n Simple_repeat Simple_repeat 5 60 0 9 1023 298 296 0 0 chr11 57468349 57468420 -64375436 - B4 SINE B4 -208 84 14 8 1023 1078 221 112 28 chr11 57468576 57468898 -64374958 + Lx8 LINE L1 7123 7471 -2 9 1023 268 331 121 7 chr11 57470962 57471102 -64372754 - MER58A DNA MER1_type -68 156 1 9 1023 335 330 153 43 chr11 57471522 57471900 -64371956 + L2b LINE L2 2952 3387 0 9 1023 401 268 138 0 chr11 57472498 57472636 -64371220 + MLT1C LTR MaLR 7 163 -304 9 1023 252 86 0 0 chr11 57472875 57472910 -64370946 + (TCC)n Simple_repeat Simple_repeat 1 35 0 9 1023 1650 106 90 28 chr11 57473585 57473875 -64369981 - ORR1A4 LTR MaLR -21 308 1 9 1023 632 269 106 141 chr11 57474505 57474881 -64368975 - MTE2a LTR MaLR -16 363 1 9 1023 912 249 0 28 chr11 57474941 57475156 -64368700 - B3 SINE B2 -6 210 2 9 1023 259 277 0 67 chr11 57475327 57475416 -64368440 + ID4_ SINE ID 1 83 0 9 1023 282 56 0 0 chr11 57475639 57475675 -64368181 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 9 1023 602 322 121 41 chr11 57475730 57476268 -64367588 - LTR41 LTR ERVL -184 584 4 9 1023 494 293 137 24 chr11 57476275 57476588 -64367268 - MLT1A0 LTR MaLR -11 354 2 9 1023 409 332 109 14 chr11 57476636 57476856 -64367000 - MER46C DNA MER2_type -97 241 1 9 1023 422 243 29 14 chr11 57477147 57477285 -64366571 + (CA)n Simple_repeat Simple_repeat 1 140 0 9 1023 192 413 54 40 chr11 57477345 57477567 -64366289 + L2b LINE L2 3108 3332 -43 9 1023 582 289 0 13 chr11 57477646 57477804 -64366052 + ID_B1 SINE B4 67 222 -2 9 1023 531 219 42 0 chr11 57478177 57478296 -64365560 + ID_B1 SINE B4 36 159 -65 9 1023 539 303 22 3 chr11 57478875 57479033 -64364823 + ID_B1 SINE B4 68 224 0 9 1023 338 224 26 13 chr11 57479045 57479122 -64364734 + RSINE1 SINE B4 44 121 -44 9 1023 786 60 0 25 chr11 57479136 57479256 -64364600 + (GGA)n Simple_repeat Simple_repeat 1 117 0 9 1023 612 315 68 18 chr11 57479263 57479541 -64364315 + B4A SINE B4 1 292 0 9 1023 451 303 30 0 chr11 57479714 57479846 -64364010 - MLT1F LTR MaLR -269 279 144 9 1023 572 201 201 30 chr11 57479833 57480002 -64363854 + ID_B1 SINE B4 5 202 -22 9 1023 748 109 124 8 chr11 57480049 57480178 -64363678 - B1_Mus1 SINE Alu 0 148 5 9 1023 760 229 5 92 chr11 57480475 57480692 -64363164 + B3A SINE B2 1 198 0 9 1023 540 0 0 0 chr11 57480892 57480952 -64362904 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1023 373 36 0 35 chr11 57481786 57481843 -64362013 + (GGA)n Simple_repeat Simple_repeat 3 57 0 9 1023 989 251 17 73 chr11 57482113 57482401 -64361455 + B4A SINE B4 1 272 -20 9 1023 423 260 0 9 chr11 57482735 57482840 -64361016 + PB1D10 SINE Alu 2 105 -12 9 1023 221 216 20 0 chr11 57482846 57482897 -64360959 + (TTAA)n Simple_repeat Simple_repeat 2 53 0 9 1023 312 27 0 0 chr11 57482950 57482987 -64360869 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 9 1023 1274 41 0 0 chr11 57483440 57483587 -64360269 - B1_Mus1 SINE Alu -1 147 1 9 1023 348 231 26 0 chr11 57483728 57483806 -64360050 + ID SINE ID 9 88 -136 9 1023 520 295 25 43 chr11 57483812 57483975 -64359881 + RSINE1 SINE B4 2 161 -4 9 1023 483 202 68 8 chr11 57484001 57484141 -64359715 + PB1D10 SINE Alu 1 147 0 9 1023 230 295 0 0 chr11 57484656 57484717 -64359139 + CT-rich Low_complexity Low_complexity 4 64 0 9 1023 197 317 122 14 chr11 57485136 57485283 -64358573 + MIRb SINE MIR 34 196 -72 9 1023 246 263 0 0 chr11 57486181 57486238 -64357618 - ID4 SINE ID 0 83 27 9 1023 231 365 74 18 chr11 57486248 57486477 -64357379 + L2 LINE L2 2744 2985 -434 9 1023 396 0 0 0 chr11 57486937 57486981 -64356875 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1023 1149 104 0 0 chr11 57487209 57487479 -64356377 + (CA)n Simple_repeat Simple_repeat 1 270 0 9 1023 398 296 39 52 chr11 57489083 57489236 -64354620 - RMER30 DNA MER1_type -50 152 2 9 1023 857 36 0 0 chr11 57489941 57490051 -64353805 - B1_Mus2 SINE Alu 0 147 38 9 1023 301 136 33 17 chr11 57489999 57490059 -64353797 - 4.5SRNA scRNA scRNA -8 86 26 9 1023 267 304 169 6 chr11 57490536 57490708 -64353148 - LTR48 LTR ERV1 -167 620 421 9 1023 494 194 110 52 chr11 57491194 57491330 -64352526 + RSINE1 SINE B4 2 145 -20 9 1023 336 325 108 6 chr11 57491363 57491530 -64352326 + MIRc SINE MIR 14 197 -71 9 1023 440 209 23 11 chr11 57492477 57492564 -64351292 - B1_Mur2 SINE Alu -55 94 7 9 1023 297 271 18 143 chr11 57492487 57492568 -64351288 - MT2B LTR ERVL -362 239 173 9 1023 244 86 0 0 chr11 57492568 57492603 -64351253 - MTD LTR MaLR 0 419 385 9 1023 672 197 83 0 chr11 57493070 57493202 -64350654 - B1_Mur2 SINE Alu -1 148 6 9 1023 2144 158 29 34 chr11 57493205 57493623 -64350233 - MTC LTR MaLR 0 421 6 9 1023 387 265 10 10 chr11 57493648 57493747 -64350109 - PB1D10 SINE Alu -18 99 1 9 1023 735 284 56 0 chr11 57493785 57493982 -64349874 - ID_B1 SINE B4 -15 209 2 9 1023 540 0 0 0 chr11 57494419 57494479 -64349377 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 1023 189 0 0 0 chr11 57494479 57494499 -64349357 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1023 363 349 56 68 chr11 57494563 57494797 -64349059 - B4A SINE B4 -55 237 7 9 1023 208 380 38 51 chr11 57494870 57495028 -64348828 + L3 LINE CR1 4329 4484 -5 9 1023 261 128 0 0 chr11 57496017 57496064 -64347792 + (C)n Simple_repeat Simple_repeat 1 47 0 9 1023 343 364 90 6 chr11 57496121 57496298 -64347558 + MIR SINE MIR 39 230 -32 9 1023 319 289 0 0 chr11 57496322 57496398 -64347458 - ID4 SINE ID -7 76 1 9 1023 352 261 88 15 chr11 57496454 57496590 -64347266 - HAL1-3A_ME LINE L1 -799 2059 1914 9 1023 392 210 12 0 chr11 57496608 57496689 -64347167 - RSINE1 SINE B4 -2 163 82 9 1023 1076 244 31 136 chr11 57496698 57497116 -64346740 - MTE2a LTR MaLR -5 374 1 9 1023 232 351 14 0 chr11 57497119 57497193 -64346663 - RSINE1 SINE B4 -89 76 2 9 1023 291 217 0 80 chr11 57497199 57497274 -64346582 - PB1D7 SINE Alu -5 115 44 9 1023 764 225 75 45 chr11 57497947 57498147 -64345709 + B3 SINE B2 11 216 0 9 1023 186 189 0 0 chr11 57498554 57498591 -64345265 + C-rich Low_complexity Low_complexity 5 41 0 9 1023 256 276 0 39 chr11 57499227 57499329 -64344527 + CT-rich Low_complexity Low_complexity 6 103 0 9 1023 210 191 0 21 chr11 57499525 57499573 -64344283 + T-rich Low_complexity Low_complexity 3 49 0 9 1023 532 225 0 16 chr11 57499874 57499996 -64343860 - PB1D7 SINE Alu 0 120 1 9 1023 243 0 0 0 chr11 57500648 57500675 -64343181 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1023 555 78 0 0 chr11 57500675 57500752 -64343104 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1023 187 271 131 33 chr11 57501413 57501535 -64342321 + MIRb SINE MIR 46 179 -89 3 1023 200 276 102 28 chr11 57502177 57502285 -64341571 - MER5A DNA MER1_type -41 148 33 4 1023 378 107 0 0 chr11 57502592 57502648 -64341208 + (CACG)n Simple_repeat Simple_repeat 2 57 0 5 1023 332 384 68 36 chr11 57503025 57503276 -64340580 - MLT1L LTR MaLR 0 610 352 6 1023 1302 106 26 0 chr11 57503723 57503912 -64339944 + B2_Mm2 SINE B2 1 194 -1 7 1023 1135 68 0 0 chr11 57503914 57504061 -64339795 + B1_Mus2 SINE Alu 1 147 0 8 1023 182 118 29 0 chr11 57504078 57504112 -64339744 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1023 366 294 25 33 chr11 57504635 57504814 -64339042 - L1MC5 LINE L1 -1091 6870 6700 1 1023 642 135 0 0 chr11 57504960 57505064 -64338792 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 1 1023 332 293 83 28 chr11 57505888 57506032 -64337824 - RMER30 DNA MER1_type -39 163 12 1 1023 208 222 0 22 chr11 57506087 57506133 -64337723 + C-rich Low_complexity Low_complexity 5 49 0 1 1023 636 184 175 12 chr11 57507162 57507322 -64336534 + ID_B1 SINE B4 11 196 -28 1 1023 1077 82 0 0 chr11 57507731 57507902 -64335954 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1023 684 219 0 0 chr11 57507943 57508080 -64335776 - B1F SINE Alu -12 137 1 1 1023 324 0 0 0 chr11 57508749 57508785 -64335071 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1023 1160 36 0 0 chr11 57508785 57508925 -64334931 - B1_Mus1 SINE Alu -8 140 1 1 1023 241 196 0 0 chr11 57509265 57509311 -64334545 + Tigger7 DNA MER2_type 70 115 -2376 1 1023 414 325 35 60 chr11 57509319 57509519 -64334337 + Tigger7 DNA MER2_type 2294 2488 -3 1 1023 563 0 15 0 chr11 57509531 57509598 -64334258 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1023 353 291 0 10 chr11 57512035 57512139 -64331717 + L1M4 LINE L1 5583 5685 -493 2 1023 1727 181 75 36 chr11 57512253 57512642 -64331214 + MTD LTR MaLR 2 405 -14 2 1023 330 132 0 0 chr11 57512725 57512778 -64331078 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1023 436 206 147 18 chr11 57512798 57512907 -64330949 - RMER15 LTR ERVL -157 418 296 2 1023 945 144 193 6 chr11 57513317 57513498 -64330358 + B3 SINE B2 1 215 -1 2 1023 422 185 0 12 chr11 57513513 57513595 -64330261 - ORR1D2 LTR MaLR -29 341 261 2 1023 591 161 0 74 chr11 57513595 57513716 -64330140 + B1_Mur1 SINE Alu 1 112 -37 2 1023 915 241 66 0 chr11 57513717 57513929 -64329927 - ORR1D2 LTR MaLR -118 252 27 2 1023 344 214 66 22 chr11 57514022 57514113 -64329743 + MT2B LTR ERVL 163 257 -344 2 1023 570 59 129 0 chr11 57514034 57514119 -64329737 + B1_Mus1 SINE Alu 14 109 -39 2 1023 226 214 155 35 chr11 57514459 57514575 -64329281 + B4A SINE B4 1 130 -162 3 1023 242 222 0 18 chr11 57514682 57514737 -64329119 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1023 232 312 42 67 chr11 57515028 57515148 -64328708 - LTR83 LTR ERVL -68 712 596 3 1023 282 253 0 57 chr11 57515668 57515756 -64328100 + ID4 SINE ID 1 83 0 3 1023 317 247 0 56 chr11 57516044 57516134 -64327722 - L1MD2 LINE L1 -15 6344 6260 3 1023 365 0 22 0 chr11 57516259 57516304 -64327552 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1023 864 20 0 0 chr11 57516309 57516411 -64327445 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 3 1023 451 244 73 37 chr11 57516919 57517055 -64326801 - ID_B1 SINE B4 0 224 84 3 1023 21 57 0 0 chr11 57517805 57517840 -64326016 + AT_rich Low_complexity Low_complexity 1 35 0 3 1023 1075 97 0 0 chr11 57517846 57518000 -64325856 + B2_Mm2 SINE B2 1 154 -41 3 1023 558 0 0 0 chr11 57518001 57518063 -64325793 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 4 1023 509 246 45 0 chr11 57518094 57518204 -64325652 - B3 SINE B2 -100 116 2 4 1023 2656 125 144 87 chr11 57518284 57518862 -64324994 - RMER19C LTR ERVK 0 611 1 4 1023 273 231 244 0 chr11 57519152 57519230 -64324626 + RSINE1 SINE B4 45 141 -24 4 1023 273 119 0 0 chr11 57519232 57519274 -64324582 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1023 753 165 0 0 chr11 57519274 57519438 -64324418 + GA-rich Low_complexity Low_complexity 1 164 0 4 1023 417 20 0 0 chr11 57519438 57519488 -64324368 + (TATG)n Simple_repeat Simple_repeat 2 51 0 4 1023 774 128 100 13 chr11 57519488 57519638 -64324218 - B2_Mm2 SINE B2 -31 164 2 4 1023 728 196 20 20 chr11 57519738 57519884 -64323972 - B1_Mur2 SINE Alu -1 148 3 4 1023 246 349 107 0 chr11 57520254 57520403 -64323453 - L2c LINE L2 -233 3154 2990 4 1023 268 364 20 0 chr11 57520414 57520513 -64323343 - L2c LINE L2 -480 2939 2839 4 1023 732 199 13 125 chr11 57520644 57520868 -64322988 + B3 SINE B2 2 200 -16 5 1023 314 212 49 24 chr11 57522354 57522436 -64321420 - Charlie15a DNA MER1_type 0 224 141 5 1023 763 301 63 19 chr11 57522774 57523089 -64320767 + ORR1E LTR MaLR 1 329 -30 5 1023 358 235 212 0 chr11 57523120 57523252 -64320604 + RSINE1 SINE B4 3 162 -3 5 1023 990 237 156 13 chr11 57523548 57523856 -64320000 + ORR1E LTR MaLR 8 359 0 5 1023 182 386 0 0 chr11 57523886 57523956 -64319900 + MIR3 SINE MIR 87 156 -52 5 1023 860 123 128 13 chr11 57524329 57524485 -64319371 + B3 SINE B2 1 174 -42 5 1023 440 299 142 122 chr11 57524672 57525080 -64318776 - MLT1E2 LTR MaLR 0 627 212 5 1023 1095 94 0 0 chr11 57525183 57525363 -64318493 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1023 825 144 0 22 chr11 57525736 57525871 -64317985 + B1_Mur3 SINE Alu 3 134 -15 5 1023 393 232 66 60 chr11 57526200 57526351 -64317505 - MTEa LTR MaLR -6 373 213 6 1023 224 276 202 10 chr11 57526505 57526604 -64317252 - PB1D9 SINE Alu 0 120 3 6 1023 851 241 82 50 chr11 57526859 57527148 -64316708 - B4 SINE B4 -7 285 9 6 1023 1068 74 0 7 chr11 57527130 57527280 -64316576 - B2_Mm2 SINE B2 -45 150 2 6 1023 573 314 157 38 chr11 57527510 57528040 -64315816 - L1MB4 LINE L1 -183 5997 5405 6 1023 651 163 92 8 chr11 57528218 57528348 -64315508 + B1_Mur2 SINE Alu 8 148 -1 6 1023 272 137 0 19 chr11 57528348 57528400 -64315456 + GA-rich Low_complexity Low_complexity 2 52 0 6 1023 493 317 71 60 chr11 57528439 57528721 -64315135 + B4A SINE B4 4 288 -4 6 1023 287 211 51 119 chr11 57528911 57529029 -64314827 - PB1D10 SINE Alu -1 116 7 6 1023 251 326 0 0 chr11 57529121 57529250 -64314606 + (TATATG)n Simple_repeat Simple_repeat 1 129 0 6 1023 375 198 11 34 chr11 57529448 57529537 -64314319 - PB1D10 SINE Alu -2 115 29 7 1023 363 332 127 19 chr11 57529613 57529825 -64314031 - L1MB4 LINE L1 -1680 4466 4232 6 1023 243 0 0 0 chr11 57530786 57530813 -64313043 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1023 672 115 0 0 chr11 57530904 57531008 -64312848 + (GGA)n Simple_repeat Simple_repeat 1 104 0 7 1023 1460 72 0 0 chr11 57531434 57531627 -64312229 - B2_Mm1a SINE B2 0 193 1 7 1023 183 241 23 102 chr11 57531628 57531649 -64312207 + L2b LINE L2 3307 3324 -63 7 1023 1244 221 80 64 chr11 57531649 57531714 -64312142 - MTEa LTR MaLR 0 379 321 7 1023 934 241 9 14 chr11 57531714 57531929 -64311927 - B3 SINE B2 0 216 3 7 1023 1244 221 80 64 chr11 57531929 57532236 -64311620 - MTEa LTR MaLR -59 320 1 7 1023 191 241 23 102 chr11 57532236 57532302 -64311554 + L2b LINE L2 3325 3387 0 7 1023 1566 178 59 20 chr11 57532368 57532724 -64311132 - ORR1C2 LTR MaLR -14 370 1 7 1023 588 87 0 0 chr11 57532786 57532878 -64310978 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 1023 180 0 0 0 chr11 57533286 57533306 -64310550 + (TGAG)n Simple_repeat Simple_repeat 1 20 0 7 1023 319 243 43 51 chr11 57533869 57533986 -64309870 + Charlie5 DNA MER1_type 2403 2518 -106 8 1023 684 263 21 11 chr11 57533987 57534175 -64309681 + B3A SINE B2 1 190 -8 8 1023 417 217 0 12 chr11 57534229 57534313 -64309543 - ID4 SINE ID 0 83 1 8 1023 407 216 32 4 chr11 57534325 57534439 -64309417 - B1F2 SINE Alu 0 120 6 8 1023 209 226 0 36 chr11 57534737 57534792 -64309064 + CT-rich Low_complexity Low_complexity 3 55 0 8 1023 297 162 14 81 chr11 57536754 57536828 -64307028 - ID2 SINE ID -13 70 2 8 1023 773 260 6 6 chr11 57537329 57537511 -64306345 + B3A SINE B2 1 182 -16 8 1023 1009 224 29 0 chr11 57537555 57537765 -64306091 - B3 SINE B2 0 216 1 8 1023 233 223 168 11 chr11 57538557 57538652 -64305204 + ORR1E LTR MaLR 246 355 -4 8 1023 975 192 53 24 chr11 57538699 57538907 -64304949 - B3 SINE B2 -2 214 1 8 1023 472 290 79 49 chr11 57539484 57539749 -64304107 - B4 SINE B4 -18 274 2 9 1023 323 212 11 17 chr11 57540208 57540305 -64303551 - PB1D10 SINE Alu -21 99 1 9 1023 495 0 0 0 chr11 57540469 57540524 -64303332 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 127 521 266 70 0 chr11 57540524 57540652 -64303204 - RSINE1 SINE B4 -18 147 11 9 1024 669 211 6 38 chr11 57541797 57541955 -64301901 + B4A SINE B4 2 154 -138 9 1024 226 330 93 62 chr11 57542084 57542278 -64301578 + L1MEc LINE L1 526 725 -5675 9 1024 363 272 117 78 chr11 57542459 57542536 -64301320 + L1MEc LINE L1 967 1029 -5371 9 1024 913 243 0 41 chr11 57542536 57542755 -64301101 - B3 SINE B2 -6 210 1 9 1024 363 272 117 78 chr11 57542755 57542984 -64300872 + L1MEc LINE L1 1030 1285 -5115 9 1024 387 281 122 108 chr11 57543045 57543332 -64300524 + B4 SINE B4 1 291 -1 9 1024 1073 262 132 13 chr11 57544907 57545224 -64298632 + MTD LTR MaLR 50 404 -15 9 1024 304 240 0 13 chr11 57545817 57545893 -64297963 + PB1D7 SINE Alu 45 119 -1 9 1024 652 223 103 56 chr11 57546507 57546702 -64297154 + MTE2a LTR MaLR 176 379 0 1 1024 245 250 0 18 chr11 57547223 57547280 -64296576 + CT-rich Low_complexity Low_complexity 2 57 0 1 1024 432 291 53 48 chr11 57547410 57547598 -64296258 - MER5A DNA MER1_type 0 189 1 1 1024 506 272 15 7 chr11 57547785 57547922 -64295934 + B4A SINE B4 2 139 -153 1 1024 251 292 182 49 chr11 57547925 57548114 -64295742 + L1M4 LINE L1 3958 4148 -1998 1 1024 771 96 0 29 chr11 57548114 57548253 -64295603 + (TAGA)n Simple_repeat Simple_repeat 3 137 0 1 1024 251 292 182 49 chr11 57548253 57548300 -64295556 + L1M4 LINE L1 4149 4229 -1917 1 1024 195 42 0 0 chr11 57548300 57548324 -64295532 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1024 251 292 182 49 chr11 57548324 57548349 -64295507 + L1M4 LINE L1 4230 4254 -1892 1 1024 2593 28 3 60 chr11 57548368 57548715 -64295141 + IAPLTR2b LTR ERVK 1 327 0 1 1024 282 202 0 72 chr11 57549066 57549160 -64294696 - B1_Mur2 SINE Alu -2 147 61 1 1024 247 287 133 47 chr11 57549707 57549776 -64294080 - MER21B LTR ERV1 -671 192 116 1 1024 1304 81 32 0 chr11 57549776 57549961 -64293895 - B2_Mm1a SINE B2 -1 192 2 1 1024 247 287 133 47 chr11 57549961 57550019 -64293837 - MER21B LTR ERV1 -748 115 54 1 1024 489 110 0 0 chr11 57550092 57550174 -64293682 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1024 193 253 41 71 chr11 57550778 57550876 -64292980 - MIRb SINE MIR -57 211 117 1 1024 625 216 102 58 chr11 57550988 57551271 -64292585 - MTC LTR MaLR -14 405 5 1 1024 337 290 24 94 chr11 57551830 57552039 -64291817 + MIR SINE MIR 38 224 -38 1 1024 1247 223 26 88 chr11 57553443 57553838 -64290018 - MTE2a LTR MaLR 0 419 37 1 1024 41 21 0 0 chr11 57553856 57553904 -64289952 + AT_rich Low_complexity Low_complexity 1 48 0 1 1024 443 242 33 0 chr11 57553915 57554006 -64289850 - RSINE1 SINE B4 -28 137 44 1 1024 636 251 31 0 chr11 57554149 57554312 -64289544 - B4 SINE B4 -117 175 8 1 1024 652 176 9 0 chr11 57554691 57554799 -64289057 + ORR1E LTR MaLR 6 114 -245 1 1024 609 152 0 0 chr11 57554800 57554899 -64288957 + U6 snRNA snRNA 4 102 -5 1 1024 238 231 0 19 chr11 57555258 57555311 -64288545 + ID4 SINE ID 3 54 -29 1 1024 663 25 0 0 chr11 57555315 57555396 -64288460 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1024 288 0 0 0 chr11 57555396 57555428 -64288428 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1024 237 176 314 12 chr11 57555753 57555839 -64288017 + ZP3AR Satellite Satellite 22 133 -79 1 1024 249 341 108 7 chr11 57556402 57556541 -64287315 - MER5A DNA MER1_type 0 189 37 1 1024 1691 151 129 0 chr11 57556650 57556975 -64286881 - ORR1C2 LTR MaLR -2 382 16 1 1024 1950 161 38 9 chr11 57556983 57557328 -64286528 - Lx5 LINE L1 -2 7048 6694 1 1024 900 247 17 52 chr11 57557358 57557589 -64286267 - ID_B1 SINE B4 -1 223 1 1 1024 919 49 0 8 chr11 57558681 57558804 -64285052 + B1_Mus1 SINE Alu 26 147 -1 1 1024 312 265 54 102 chr11 57558682 57558829 -64285027 + B4A SINE B4 111 250 -42 1 1024 662 163 34 82 chr11 57558833 57558980 -64284876 + B1_Mur3 SINE Alu 3 142 -7 1 1024 328 207 0 0 chr11 57559100 57559158 -64284698 + BC1_Mm scRNA scRNA 25 82 -70 1 1024 280 167 0 18 chr11 57559166 57559221 -64284635 + B3A SINE B2 27 80 -118 1 1024 896 196 74 5 chr11 57560149 57560339 -64283517 + B4A SINE B4 4 206 -86 1 1024 1908 157 62 3 chr11 57560341 57560680 -64283176 + ORR1B2 LTR MaLR 1 359 -8 1 1024 279 267 133 0 chr11 57560684 57560759 -64283097 + B4A SINE B4 206 290 -2 1 1024 194 208 0 19 chr11 57561773 57561827 -64282029 + CT-rich Low_complexity Low_complexity 3 55 0 1 1024 1558 83 0 0 chr11 57562074 57562267 -64281589 + B2_Mm2 SINE B2 2 194 -1 1 1024 285 182 0 0 chr11 57562267 57562322 -64281534 + GA-rich Low_complexity Low_complexity 3 57 0 1 1024 317 297 71 14 chr11 57562397 57562537 -64281319 + B1F2 SINE Alu 1 148 -1 1 1024 783 242 79 58 chr11 57562696 57563010 -64280846 - MTD LTR MaLR -3 416 30 1 1024 309 338 217 29 chr11 57565310 57565554 -64278302 + RMER15 LTR ERVL 273 562 -13 1 1024 426 308 4 0 chr11 57566561 57566795 -64277061 + (TG)n Simple_repeat Simple_repeat 1 235 0 1 1024 701 228 30 42 chr11 57566795 57566960 -64276896 - RSINE1 SINE B4 0 165 3 1 1024 1406 266 27 13 chr11 57567848 57568222 -64275634 - MTEa LTR MaLR 0 379 1 1 1024 824 203 16 8 chr11 57568899 57568982 -64274874 + B4 SINE B4 1 191 -101 1 1024 255 255 154 19 chr11 57568982 57569086 -64274770 + PB1D7 SINE Alu 1 118 -2 1 1024 824 203 16 8 chr11 57569086 57569107 -64274749 + B4 SINE B4 192 244 -48 1 1024 207 0 0 0 chr11 57569125 57569148 -64274708 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 1 1024 516 255 57 0 chr11 57569202 57569341 -64274515 - MER2 DNA MER2_type 0 345 199 1 1024 754 232 0 89 chr11 57569341 57569521 -64274335 + RSINE1 SINE B4 2 165 0 1 1024 279 275 109 9 chr11 57569614 57569724 -64274132 - MER2 DNA MER2_type -179 166 46 1 1024 1073 254 59 11 chr11 57570625 57570691 -64273165 - B4 SINE B4 -8 284 215 1 1024 291 28 0 0 chr11 57570691 57570727 -64273129 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1024 1073 254 59 11 chr11 57570727 57570931 -64272925 - B4 SINE B4 -78 214 2 1 1024 1250 118 21 11 chr11 57570951 57571139 -64272717 - B2_Mm2 SINE B2 -4 191 2 1 1024 424 218 26 35 chr11 57572495 57572609 -64271247 + B4A SINE B4 166 278 -14 1 1024 465 19 0 0 chr11 57572615 57572669 -64271187 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1024 535 205 107 0 chr11 57572669 57572791 -64271065 + RSINE1 SINE B4 28 162 -3 1 1024 28 61 0 0 chr11 57572793 57572842 -64271014 + AT_rich Low_complexity Low_complexity 1 49 0 1 1024 1380 85 21 0 chr11 57572848 57573037 -64270819 + B2_Mm1t SINE B2 1 193 0 1 1024 343 348 43 0 chr11 57573201 57573365 -64270491 - MLT1C LTR MaLR -291 176 6 1 1024 342 301 32 0 chr11 57573400 57573493 -64270363 + RSINE1 SINE B4 2 97 -68 1 1024 185 316 51 0 chr11 57573786 57573865 -64269991 + MIRc SINE MIR 61 143 -125 1 1024 450 0 0 0 chr11 57573916 57573966 -64269890 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1024 429 20 0 0 chr11 57573966 57574015 -64269841 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1024 299 234 0 108 chr11 57575017 57575115 -64268741 + BC1_Mm scRNA scRNA 1 87 -65 1 1024 901 48 200 0 chr11 57575115 57575240 -64268616 + B1_Mur4 SINE Alu 1 150 0 1 1024 299 234 0 108 chr11 57575240 57575261 -64268595 + BC1_Mm scRNA scRNA 88 107 -45 1 1024 4544 136 147 45 chr11 57575329 57575460 -64268396 - RMER19B LTR ERVK 0 902 771 1 1024 1566 47 16 0 chr11 57575460 57575650 -64268206 + B2_Mm1a SINE B2 1 193 0 1 1024 4544 136 147 45 chr11 57575650 57576337 -64267519 - RMER19B LTR ERVK -132 770 1 1 1024 215 125 25 0 chr11 57576351 57576391 -64267465 + (CATG)n Simple_repeat Simple_repeat 3 43 0 1 1024 736 209 8 0 chr11 57576407 57576541 -64267315 - RSINE1 SINE B4 -19 146 12 1 1024 225 313 100 91 chr11 57576553 57576688 -64267168 - L1M4 LINE L1 -1378 4768 4640 1 1024 4219 54 6 2 chr11 57576688 57577189 -64266667 - RLTR1C LTR ERV1 0 503 1 1 1024 225 313 100 91 chr11 57577189 57577245 -64266611 - L1M4 LINE L1 -1507 4639 4583 1 1024 1435 89 21 0 chr11 57577245 57577435 -64266421 - B2_Mm2 SINE B2 -1 194 1 1 1024 225 313 100 91 chr11 57577435 57577551 -64266305 - L1M4 LINE L1 -1564 4582 4457 1 1024 803 118 47 0 chr11 57577553 57577680 -64266176 - B1_Mus1 SINE Alu -1 147 15 1 1024 487 221 247 18 chr11 57577725 57577895 -64265961 - B3 SINE B2 -1 215 7 1 1024 704 198 0 0 chr11 57577928 57578049 -64265807 + 5S rRNA rRNA 1 121 0 1 1024 555 245 63 0 chr11 57578094 57578237 -64265619 - RSINE1 SINE B4 -10 155 4 1 1024 275 216 54 0 chr11 57578373 57578447 -64265409 + CT-rich Low_complexity Low_complexity 6 83 0 1 1024 389 206 133 10 chr11 57578448 57578546 -64265310 - MTEa LTR MaLR -242 137 28 1 1024 480 340 44 20 chr11 57578644 57578848 -64265008 - MLT1K LTR MaLR -372 223 15 1 1024 197 226 42 15 chr11 57578876 57578941 -64264915 + MIRc SINE MIR 83 146 -130 1 1024 904 202 103 29 chr11 57579500 57579704 -64264152 + ID_B1 SINE B4 5 223 -1 1 1024 405 86 0 0 chr11 57581758 57581816 -64262040 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1024 225 0 0 0 chr11 57582057 57582082 -64261774 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1024 252 59 0 0 chr11 57584383 57584417 -64259439 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 1 1024 260 325 71 31 chr11 57585439 57585566 -64258290 + MIRc SINE MIR 38 169 -99 1 1024 526 284 6 53 chr11 57585933 57586104 -64257752 + RSINE1 SINE B4 3 165 0 1 1024 280 323 66 54 chr11 57586232 57586399 -64257457 + MIRb SINE MIR 23 191 -77 1 1024 241 250 51 38 chr11 57587156 57587235 -64256621 + L2a LINE L2 3334 3413 -13 1 1024 315 0 0 0 chr11 57587634 57587669 -64256187 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1024 277 218 0 0 chr11 57587986 57588041 -64255815 + ID2 SINE ID 2 56 -27 1 1024 371 221 65 37 chr11 57588092 57588189 -64255667 + PB1D10 SINE Alu 5 105 -12 1 1024 228 122 0 0 chr11 57588189 57588230 -64255626 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 1 1024 561 188 319 24 chr11 57588244 57588413 -64255443 + ID_B1 SINE B4 1 219 -5 1 1024 213 121 0 0 chr11 57590034 57590067 -64253789 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1024 267 299 11 22 chr11 57592780 57592869 -64250987 + PB1D10 SINE Alu 30 117 0 1 1024 354 297 200 0 chr11 57593318 57593473 -64250383 + Cheshire DNA MER1_type 50 235 -2185 1 1024 183 80 0 0 chr11 57593548 57593573 -64250283 + (CCCCG)n Simple_repeat Simple_repeat 3 27 0 1 1024 1338 84 6 22 chr11 57594063 57594246 -64249610 + B2_Mm2 SINE B2 2 181 -14 1 1024 618 266 143 6 chr11 57594275 57594516 -64249340 + B4A SINE B4 2 274 -18 1 1024 441 145 0 0 chr11 57596009 57596085 -64247771 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1024 228 250 0 140 chr11 57596086 57596179 -64247677 - MLT1A0 LTR MaLR -8 357 278 2 1024 310 312 19 102 chr11 57596321 57596478 -64247378 + RSINE1 SINE B4 4 147 -18 2 1024 369 0 0 0 chr11 57596483 57596524 -64247332 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1024 192 77 0 0 chr11 57596524 57596550 -64247306 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 2 1024 232 167 0 48 chr11 57596565 57596592 -64247264 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1024 856 166 21 7 chr11 57596592 57596732 -64247124 - B1_Mur2 SINE Alu -6 143 2 2 1024 232 167 0 48 chr11 57596732 57596767 -64247089 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2 1024 531 242 40 57 chr11 57596785 57596960 -64246896 + ID_B1 SINE B4 3 174 -50 2 1024 300 111 0 0 chr11 57597080 57597125 -64246731 + (ATG)n Simple_repeat Simple_repeat 3 47 0 2 1024 591 237 74 0 chr11 57597534 57597669 -64246187 + B1_Mur1 SINE Alu 5 149 0 2 1024 236 193 70 0 chr11 57597669 57597726 -64246130 + GA-rich Low_complexity Low_complexity 1 61 0 2 1024 1289 20 0 13 chr11 57597816 57597966 -64245890 + B1_Mus1 SINE Alu 1 148 0 2 1024 198 0 0 0 chr11 57599618 57599640 -64244216 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 2 1024 772 209 59 30 chr11 57601703 57601905 -64241951 + B3 SINE B2 9 216 0 2 1024 806 221 144 0 chr11 57601932 57602113 -64241743 + B3 SINE B2 2 208 -8 2 1024 982 112 16 5 chr11 57602397 57602558 -64241298 + B1_Mm SINE Alu 6 311 0 2 1024 764 228 95 57 chr11 57602565 57602839 -64241017 + Lx4B LINE L1 6586 6938 -120 2 1024 209 33 33 0 chr11 57602877 57602907 -64240949 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1024 292 211 132 164 chr11 57602925 57602973 -64240883 + ORR1C2 LTR MaLR 174 213 -171 2 1024 1142 78 0 0 chr11 57602973 57603114 -64240742 + B1_Mus1 SINE Alu 2 142 -6 2 1024 292 211 132 164 chr11 57603114 57603224 -64240632 + ORR1C2 LTR MaLR 214 327 -57 2 1024 261 0 0 0 chr11 57603224 57603253 -64240603 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1024 1142 89 0 0 chr11 57603253 57603399 -64240457 - B1_Mus2 SINE Alu 0 147 2 2 1024 518 55 14 0 chr11 57603400 57603473 -64240383 + ORR1C2 LTR MaLR 311 384 0 2 1024 565 233 92 8 chr11 57603563 57603664 -64240192 + B3 SINE B2 70 182 -34 2 1024 360 0 0 0 chr11 57603664 57603704 -64240152 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1024 565 233 92 8 chr11 57603704 57603732 -64240124 + B3 SINE B2 183 210 -6 2 1024 675 250 6 31 chr11 57603914 57604075 -64239781 + RSINE1 SINE B4 3 159 -6 2 1024 725 221 7 0 chr11 57604110 57604255 -64239601 - B1_Mur1 SINE Alu -2 147 2 2 1024 327 277 55 92 chr11 57604255 57604329 -64239527 - MT2B LTR ERVL -446 155 88 2 1024 261 217 133 0 chr11 57605321 57605381 -64238475 - B1_Mur3 SINE Alu -81 68 1 2 1024 267 31 0 0 chr11 57605382 57605414 -64238442 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1024 716 200 0 29 chr11 57605417 57605556 -64238300 - B1_Mur3 SINE Alu -14 135 1 2 1024 666 0 0 0 chr11 57605559 57605633 -64238223 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1024 384 282 34 17 chr11 57605646 57605765 -64238091 - RSINE1 SINE B4 -40 125 5 2 1024 35 24 0 0 chr11 57605778 57605820 -64238036 + AT_rich Low_complexity Low_complexity 1 42 0 2 1024 281 257 157 0 chr11 57605850 57605920 -64237936 - ID4 SINE ID -1 82 2 2 1024 573 269 192 0 chr11 57606378 57606560 -64237296 + ID_B1 SINE B4 2 218 -6 2 1024 1237 90 73 0 chr11 57607062 57607240 -64236616 - B2_Mm2 SINE B2 -4 191 1 2 1024 419 304 8 16 chr11 57607310 57607437 -64236419 + B4A SINE B4 15 140 -152 2 1024 445 274 83 30 chr11 57607437 57607606 -64236250 + B3A SINE B2 21 198 0 2 1024 201 211 0 0 chr11 57607673 57607725 -64236131 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1024 548 322 99 51 chr11 57607967 57608281 -64235575 + MLT1J LTR MaLR 1 329 -183 2 1024 386 53 0 17 chr11 57608461 57608519 -64235337 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 2 1024 309 299 84 62 chr11 57608522 57608700 -64235156 - MIR SINE MIR -67 195 14 2 1024 856 294 128 72 chr11 57608967 57609326 -64234530 - MTEa LTR MaLR 0 379 1 2 1024 864 189 7 0 chr11 57609757 57609905 -64233951 - B1_Mur2 SINE Alu 0 149 1 2 1024 301 266 33 163 chr11 57609936 57610089 -64233767 + B3A SINE B2 1 133 -65 2 1024 984 163 35 75 chr11 57610125 57610163 -64233693 + B3 SINE B2 1 38 -178 2 1024 1613 46 0 5 chr11 57610163 57610358 -64233498 + B2_Mm2 SINE B2 2 195 0 2 1024 984 163 35 75 chr11 57610358 57610518 -64233338 + B3 SINE B2 39 191 -25 2 1024 243 0 0 0 chr11 57610537 57610564 -64233292 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1024 764 255 110 0 chr11 57610694 57610894 -64232962 + ID_B1 SINE B4 3 224 0 2 1024 866 116 0 7 chr11 57610894 57611033 -64232823 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 2 1024 202 189 0 0 chr11 57611366 57611403 -64232453 + G-rich Low_complexity Low_complexity 1 37 0 2 1024 291 230 0 0 chr11 57611571 57611582 -64232274 + A-rich Low_complexity Low_complexity 1 11 0 2 1024 1021 66 88 0 chr11 57611582 57611718 -64232138 + B1_Mus1 SINE Alu 1 148 0 2 1024 291 230 0 0 chr11 57611718 57611780 -64232076 + A-rich Low_complexity Low_complexity 12 73 0 2 1024 891 87 0 30 chr11 57611782 57611913 -64231943 + B1_Mur4 SINE Alu 24 150 0 2 1024 972 150 60 11 chr11 57612097 57612279 -64231577 - B2_Mm2 SINE B2 0 195 5 2 1024 180 0 0 0 chr11 57612371 57612391 -64231465 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1024 526 246 9 0 chr11 57612578 57612692 -64231164 - RSINE1 SINE B4 -40 125 11 2 1024 558 0 0 0 chr11 57612736 57612798 -64231058 + (GTTTG)n Simple_repeat Simple_repeat 5 66 0 2 1024 255 308 32 42 chr11 57612823 57612918 -64230938 - B3 SINE B2 -88 128 35 2 1024 23 0 0 0 chr11 57612942 57612965 -64230891 + AT_rich Low_complexity Low_complexity 1 23 0 2 1024 393 246 26 60 chr11 57613011 57613128 -64230728 - PB1D7 SINE Alu 0 120 8 2 1024 577 259 87 64 chr11 57613305 57613378 -64230478 - ID_B1 SINE B4 0 224 155 2 1024 1211 107 43 5 chr11 57613378 57613566 -64230290 + B2_Mm2 SINE B2 1 195 0 2 1024 577 259 87 64 chr11 57613566 57613711 -64230145 - ID_B1 SINE B4 -70 154 1 2 1024 36 87 0 0 chr11 57615127 57615219 -64228637 + GC_rich Low_complexity Low_complexity 1 92 0 2 1024 24 91 0 0 chr11 57615293 57615359 -64228497 + GC_rich Low_complexity Low_complexity 1 66 0 2 1024 21 36 0 0 chr11 57615563 57615591 -64228265 + GC_rich Low_complexity Low_complexity 1 28 0 2 1024 26 30 0 0 chr11 57615629 57615662 -64228194 + GC_rich Low_complexity Low_complexity 1 33 0 2 1024 234 91 0 0 chr11 57616962 57616995 -64226861 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2 1024 219 36 0 0 chr11 57617485 57617513 -64226343 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1024 450 0 0 0 chr11 57617934 57617984 -64225872 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1024 1086 49 14 0 chr11 57617984 57618126 -64225730 - B1_Mus1 SINE Alu -3 145 2 2 1024 927 60 45 0 chr11 57618235 57618369 -64225487 - B1_Mus1 SINE Alu 0 148 9 2 1024 1097 48 7 7 chr11 57618466 57618613 -64225243 + B1_Mus1 SINE Alu 1 147 -1 2 1024 189 0 0 0 chr11 57618615 57618636 -64225220 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1024 423 0 0 0 chr11 57620268 57620315 -64223541 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1024 250 242 181 32 chr11 57620319 57620413 -64223443 - MER20 DNA MER1_type -111 108 1 2 1024 234 0 0 0 chr11 57620806 57620832 -64223024 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1024 239 114 0 22 chr11 57621282 57621327 -64222529 + (TCC)n Simple_repeat Simple_repeat 2 45 0 2 1024 1362 79 11 0 chr11 57621926 57622116 -64221740 - B2_Mm1t SINE B2 0 193 2 2 1024 519 95 0 0 chr11 57622903 57622977 -64220879 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1024 314 213 66 13 chr11 57622990 57623066 -64220790 - PB1D10 SINE Alu -37 80 1 2 1024 401 220 100 0 chr11 57624326 57624426 -64219430 + PB1D10 SINE Alu 2 111 -6 2 1024 377 240 40 0 chr11 57624436 57624511 -64219345 + RSINE1 SINE B4 10 87 -78 2 1024 221 271 0 0 chr11 57626015 57626063 -64217793 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1024 630 0 0 0 chr11 57626286 57626356 -64217500 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1024 183 129 0 0 chr11 57626479 57626510 -64217346 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1024 370 335 50 12 chr11 57626654 57626814 -64217042 - L3 LINE CR1 -12 4477 4312 2 1024 499 222 121 34 chr11 57627582 57627731 -64216125 - RMER30 DNA MER1_type -1 201 40 2 1024 246 32 0 0 chr11 57628738 57628769 -64215087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1024 1112 62 0 0 chr11 57628769 57628906 -64214950 - B1_Mus2 SINE Alu -8 139 3 2 1024 462 222 43 16 chr11 57629217 57629348 -64214508 - PB1D10 SINE Alu -14 136 11 2 1024 243 266 0 15 chr11 57629297 57629362 -64214494 - B4A SINE B4 -146 146 83 2 1024 329 237 41 10 chr11 57629375 57629473 -64214383 - PB1D10 SINE Alu 0 117 17 2 1024 792 0 0 0 chr11 57629639 57629727 -64214129 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 2 1024 396 326 5 73 chr11 57629881 57630073 -64213783 - Lx8 LINE L1 -586 6887 6709 2 1024 330 276 20 28 chr11 57630173 57630301 -64213555 + PB1D10 SINE Alu 1 128 -21 2 1024 909 108 17 22 chr11 57630320 57630499 -64213357 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 2 1024 316 202 0 33 chr11 57630500 57630592 -64213264 + GA-rich Low_complexity Low_complexity 4 92 0 2 1024 185 254 63 0 chr11 57630666 57630729 -64213127 - MIRc SINE MIR -29 239 173 2 1024 1086 148 41 37 chr11 57631408 57631626 -64212230 - URR1B DNA MER1_type 0 225 7 3 1024 536 284 95 0 chr11 57631623 57631771 -64212085 - ID_B1 SINE B4 -62 162 1 3 1024 679 226 59 59 chr11 57631803 57632005 -64211851 - B3 SINE B2 -13 203 2 3 1024 707 153 0 100 chr11 57632027 57632187 -64211669 - B1_Mus1 SINE Alu -3 145 2 3 1024 486 148 32 0 chr11 57634286 57634380 -64209476 - B1_Mur4 SINE Alu -43 107 1 3 1024 245 296 67 58 chr11 57634287 57634391 -64209465 - MT2B LTR ERVL -343 258 154 3 1024 636 159 124 23 chr11 57634419 57634548 -64209308 - B1_Mur3 SINE Alu -7 142 1 3 1024 204 371 0 0 chr11 57634689 57634751 -64209105 + MIR SINE MIR 27 88 -174 3 1024 1274 89 5 55 chr11 57634755 57634957 -64208899 + B2_Mm1a SINE B2 1 192 -1 3 1024 319 240 14 129 chr11 57634982 57635121 -64208735 + MT2B LTR ERVL 156 278 -323 3 1024 744 191 7 0 chr11 57634996 57635132 -64208724 + B1_Mur1 SINE Alu 7 143 -6 3 1024 693 279 68 0 chr11 57635235 57635425 -64208431 + ID_B1 SINE B4 1 203 -21 3 1024 224 364 74 0 chr11 57635325 57635446 -64208410 + B1F SINE Alu 18 147 -2 3 1024 1215 94 20 35 chr11 57635492 57635662 -64208194 + B2_Mm2 SINE B2 1 173 -22 3 1024 1023 116 7 0 chr11 57635662 57635809 -64208047 + B1_Mus1 SINE Alu 1 148 0 3 1024 1215 94 20 35 chr11 57635809 57635836 -64208020 + B2_Mm2 SINE B2 174 195 0 3 1024 639 246 128 5 chr11 57635889 57636077 -64207779 - B3 SINE B2 -2 214 4 3 1024 225 83 0 0 chr11 57636083 57636119 -64207737 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1024 1286 107 0 0 chr11 57636187 57636374 -64207482 - B2_Mm2 SINE B2 -7 188 2 3 1024 1062 210 15 0 chr11 57636415 57636620 -64207236 + B3 SINE B2 2 209 -7 3 1024 294 114 0 0 chr11 57636761 57636805 -64207051 - RSINE1 SINE B4 -114 51 8 3 1024 1428 63 21 5 chr11 57636826 57637018 -64206838 - B2_Mm2 SINE B2 0 195 1 3 1024 196 328 16 0 chr11 57637393 57637457 -64206399 - MIR3 SINE MIR -30 178 114 3 1024 355 164 14 0 chr11 57637464 57637537 -64206319 + ID4 SINE ID 4 77 -6 3 1024 252 0 0 0 chr11 57637564 57637592 -64206264 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1024 189 74 0 0 chr11 57637609 57637636 -64206220 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1024 311 288 23 53 chr11 57638451 57638583 -64205273 + RSINE1 SINE B4 38 165 0 3 1024 1042 53 0 0 chr11 57638743 57638876 -64204980 + B1_Mus2 SINE Alu 1 133 -14 3 1024 198 0 0 0 chr11 57639162 57639184 -64204672 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1024 1188 41 0 0 chr11 57639184 57639330 -64204526 - B1_Mm SINE Alu 0 147 2 3 1024 211 309 28 42 chr11 57639569 57639640 -64204216 + L2c LINE L2 3307 3376 -11 3 1024 387 219 44 0 chr11 57639835 57639951 -64203905 + B1F SINE Alu 21 148 0 3 1024 302 268 9 0 chr11 57642402 57642514 -64201342 + GA-rich Low_complexity Low_complexity 3 115 0 3 1024 522 0 0 0 chr11 57645840 57645898 -64197958 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1024 183 133 0 0 chr11 57645901 57645931 -64197925 - MIR SINE MIR -66 142 113 3 1024 488 254 167 0 chr11 57647812 57647938 -64195918 - RSINE1 SINE B4 -16 149 3 3 1024 24 32 0 0 chr11 57647944 57647975 -64195881 + AT_rich Low_complexity Low_complexity 1 31 0 3 1024 31 26 0 0 chr11 57648464 57648502 -64195354 + AT_rich Low_complexity Low_complexity 1 38 0 3 1024 366 23 0 0 chr11 57648565 57648608 -64195248 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1024 260 318 24 0 chr11 57649459 57649544 -64194312 - PB1D10 SINE Alu -29 88 2 3 1024 207 293 17 0 chr11 57649576 57649634 -64194222 + MIR3 SINE MIR 100 158 -50 3 1024 240 215 190 0 chr11 57650962 57651041 -64192815 - MIR SINE MIR -78 130 37 3 1024 306 0 0 0 chr11 57651280 57651314 -64192542 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1024 441 0 0 0 chr11 57651314 57651362 -64192494 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1024 198 0 0 0 chr11 57652255 57652277 -64191579 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 3 1024 525 32 0 0 chr11 57652521 57652584 -64191272 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 3 1024 249 186 56 28 chr11 57652584 57652648 -64191208 - ID4 SINE ID -9 74 9 3 1024 532 229 72 43 chr11 57652646 57652836 -64191020 - ID_B1 SINE B4 -56 236 42 3 1024 283 270 0 13 chr11 57653936 57654011 -64189845 - ID4_ SINE ID -8 75 2 3 1024 386 115 119 21 chr11 57655495 57655589 -64188267 + L1Md_T LINE L1 6471 6574 -8 3 1024 246 182 0 0 chr11 57655745 57655811 -64188045 + T-rich Low_complexity Low_complexity 1 66 0 3 1024 1096 41 0 64 chr11 57655812 57655969 -64187887 - B1_Mus1 SINE Alu 0 148 2 3 1024 21 0 0 0 chr11 57656177 57656198 -64187658 + AT_rich Low_complexity Low_complexity 1 21 0 3 1024 480 177 61 31 chr11 57656635 57656769 -64187087 + B1F2 SINE Alu 14 149 0 3 1024 1188 73 90 0 chr11 57657102 57657279 -64186577 - B2_Mm2 SINE B2 -2 193 1 3 1024 486 0 0 0 chr11 57657282 57657336 -64186520 + (TTA)n Simple_repeat Simple_repeat 2 55 0 3 1024 1140 44 0 0 chr11 57657336 57657473 -64186383 - B1_Mm SINE Alu -10 137 1 3 1024 22 0 0 0 chr11 57657473 57657495 -64186361 + AT_rich Low_complexity Low_complexity 1 22 0 3 1024 536 162 165 35 chr11 57657570 57657685 -64186171 - B1_Mur3 SINE Alu -10 139 10 3 1024 1158 48 0 20 chr11 57657686 57657835 -64186021 + B1_Mus1 SINE Alu 2 147 -1 3 1024 480 18 0 0 chr11 57657867 57657924 -64185932 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1024 234 0 0 0 chr11 57658073 57658099 -64185757 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 3 1024 769 146 15 30 chr11 57658099 57658233 -64185623 - B1_Mur3 SINE Alu -12 137 6 3 1024 549 260 55 8 chr11 57658284 57658412 -64185444 - RSINE1 SINE B4 -29 136 3 3 1024 386 238 0 12 chr11 57658464 57658545 -64185311 - ID_B1 SINE B4 -9 215 136 3 1024 570 291 50 5 chr11 57658608 57658808 -64185048 - L1MD3 LINE L1 -40 7955 7747 3 1024 237 65 0 0 chr11 57659292 57659323 -64184533 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1024 557 266 45 7 chr11 57659335 57659490 -64184366 + RSINE1 SINE B4 1 161 -4 3 1024 1571 31 5 0 chr11 57659892 57660084 -64183772 - B2_Mm1t SINE B2 0 193 1 3 1024 817 151 7 28 chr11 57660087 57660230 -64183626 - B1_Mur4 SINE Alu 0 150 11 3 1024 261 291 25 127 chr11 57660131 57660249 -64183607 - MT2B LTR ERVL -344 257 152 3 1024 480 266 34 27 chr11 57660258 57660405 -64183451 - RSINE1 SINE B4 0 165 18 3 1024 333 0 0 0 chr11 57660442 57660479 -64183377 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1024 402 21 0 0 chr11 57660479 57660525 -64183331 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1024 500 239 7 48 chr11 57660525 57660670 -64183186 - B1F SINE Alu -6 143 5 3 1024 302 212 123 66 chr11 57660857 57660963 -64182893 - MIR3 SINE MIR -39 169 58 3 1024 24 53 0 0 chr11 57661415 57661453 -64182403 + AT_rich Low_complexity Low_complexity 1 38 0 3 1024 264 59 0 0 chr11 57661645 57661679 -64182177 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1024 582 115 189 39 chr11 57661679 57661800 -64182056 - B1_Mur4 SINE Alu -8 142 2 3 1024 404 281 126 26 chr11 57661903 57662093 -64181763 - L1MA4 LINE L1 -393 5907 5699 3 1024 811 294 61 13 chr11 57662080 57662390 -64181466 + L1M2 LINE L1 4651 5006 -1137 3 1024 456 248 119 0 chr11 57662547 57662656 -64181200 - RSINE1 SINE B4 -33 132 11 3 1024 233 128 0 21 chr11 57662716 57662764 -64181092 + (TCC)n Simple_repeat Simple_repeat 3 49 0 3 1024 282 257 14 0 chr11 57662777 57662847 -64181009 - ID4_ SINE ID -4 79 9 3 1024 204 125 0 0 chr11 57663191 57663223 -64180633 + (TCC)n Simple_repeat Simple_repeat 2 33 0 3 1024 539 201 6 19 chr11 57663241 57663403 -64180453 + CT-rich Low_complexity Low_complexity 1 160 0 3 1024 810 131 8 0 chr11 57663419 57663541 -64180315 - B1_Mus1 SINE Alu -6 142 20 3 1024 568 254 93 11 chr11 57663545 57663728 -64180128 - B3A SINE B2 0 198 1 3 1024 478 250 9 0 chr11 57663841 57663953 -64179903 - ID_B1 SINE B4 -2 222 110 3 1024 351 246 100 0 chr11 57664591 57664701 -64179155 + LTR16A1 LTR ERVL 324 444 -12 3 1024 216 268 0 18 chr11 57665103 57665160 -64178696 + CT-rich Low_complexity Low_complexity 1 56 0 3 1024 245 182 23 0 chr11 57665294 57665338 -64178518 - ID4_ SINE ID -27 56 12 3 1024 295 114 62 5 chr11 57665348 57665419 -64178437 - B1_Mm SINE Alu -1 119 43 3 1024 251 245 19 0 chr11 57665366 57665419 -64178437 - MT2B LTR ERVL -348 253 200 3 1024 241 282 42 0 chr11 57665419 57665435 -64178421 - RLTR25B LTR ERVK -528 498 427 3 1024 444 154 0 81 chr11 57665454 57665553 -64178303 - B1_Mur4 SINE Alu 0 150 60 3 1024 336 293 47 6 chr11 57665571 57665696 -64178160 - PB1D10 SINE Alu 0 150 13 3 1024 216 179 71 0 chr11 57665650 57665706 -64178150 - B4 SINE B4 -149 143 84 3 1024 751 150 39 0 chr11 57665918 57666045 -64177811 - B1_Mus2 SINE Alu -11 136 5 3 1024 393 273 24 118 chr11 57665937 57666149 -64177707 - MT2B LTR ERVL -337 264 73 3 1024 774 242 50 11 chr11 57666098 57666278 -64177578 - ID_B1 SINE B4 -9 215 29 3 1024 719 137 0 8 chr11 57666521 57666646 -64177210 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 4 1024 535 160 85 0 chr11 57666646 57666752 -64177104 - B1_Mur2 SINE Alu -1 148 34 4 1024 384 297 109 75 chr11 57667086 57667352 -64176504 - MER102a DNA MER1_type -55 275 1 4 1024 1077 84 0 0 chr11 57667601 57667768 -64176088 + (TG)n Simple_repeat Simple_repeat 1 167 0 4 1024 990 123 0 0 chr11 57667956 57668094 -64175762 + B1_Mus2 SINE Alu 7 144 -3 4 1024 1133 78 28 0 chr11 57668739 57668881 -64174975 - B1_Mus2 SINE Alu 0 147 2 4 1024 314 196 45 118 chr11 57669596 57669609 -64174247 + MT2B LTR ERVL 153 254 -347 4 1024 481 208 52 10 chr11 57669609 57669706 -64174150 + B1_Mur2 SINE Alu 1 101 -48 4 1024 225 0 0 0 chr11 57669719 57669744 -64174112 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 4 1024 899 87 8 0 chr11 57669748 57669875 -64173981 - B1_Mus2 SINE Alu 0 147 20 4 1024 924 123 0 0 chr11 57669917 57670047 -64173809 - B3 SINE B2 -86 130 1 4 1024 642 259 103 15 chr11 57670087 57670291 -64173565 + ID_B1 SINE B4 3 224 0 4 1024 548 244 95 44 chr11 57670322 57670459 -64173397 + RSINE1 SINE B4 15 158 -7 4 1024 246 307 73 63 chr11 57670571 57670776 -64173080 - L1MB7 LINE L1 -101 6083 5877 4 1025 24 0 0 0 chr11 57671825 57671849 -64172007 + AT_rich Low_complexity Low_complexity 1 24 0 4 1025 1069 96 7 7 chr11 57671940 57672087 -64171769 - B1_Mus1 SINE Alu -1 147 1 4 1025 495 0 0 0 chr11 57672402 57672457 -64171399 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1025 21 36 0 0 chr11 57672551 57672579 -64171277 + AT_rich Low_complexity Low_complexity 1 28 0 4 1025 323 261 13 4 chr11 57672910 57673139 -64170717 + (CATA)n Simple_repeat Simple_repeat 1 231 0 4 1025 222 105 0 0 chr11 57673195 57673233 -64170623 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 4 1025 760 141 99 49 chr11 57673296 57673311 -64170545 - B1_Mur4 SINE Alu -1 149 141 4 1025 306 0 0 0 chr11 57673311 57673345 -64170511 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1025 760 141 99 49 chr11 57673345 57673471 -64170385 - B1_Mur4 SINE Alu -10 140 1 4 1025 840 237 10 64 chr11 57673479 57673522 -64170334 - B3A SINE B2 -1 197 164 4 1025 441 0 0 0 chr11 57673522 57673571 -64170285 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1025 840 237 10 64 chr11 57673571 57673730 -64170126 - B3A SINE B2 -35 163 6 4 1025 283 294 10 0 chr11 57673800 57673902 -64169954 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 4 1025 367 213 0 14 chr11 57673913 57674051 -64169805 + (TG)n Simple_repeat Simple_repeat 2 137 0 4 1025 1116 50 43 0 chr11 57674212 57674352 -64169504 + B1_Mus2 SINE Alu 2 147 0 4 1025 409 186 196 0 chr11 57675042 57675144 -64168712 + ID_B1 SINE B4 103 224 0 4 1025 948 162 0 0 chr11 57675156 57675304 -64168552 + B1_Mus1 SINE Alu 1 148 0 4 1025 246 128 0 0 chr11 57675307 57675346 -64168510 + (CAAG)n Simple_repeat Simple_repeat 2 40 0 4 1025 1301 34 0 0 chr11 57675421 57675567 -64168289 + B1_Mus2 SINE Alu 1 146 -1 4 1025 242 95 24 0 chr11 57675568 57675610 -64168246 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1025 228 202 196 29 chr11 57675650 57675752 -64168104 - L1MB3 LINE L1 -245 5938 5820 4 1025 601 272 15 0 chr11 57676856 57676992 -64166864 - ID_B1 SINE B4 -1 223 86 4 1025 312 27 0 0 chr11 57677062 57677099 -64166757 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 4 1025 248 234 0 0 chr11 57677252 57677299 -64166557 + MER20 DNA MER1_type 38 84 -135 4 1025 701 260 66 14 chr11 57677564 57677775 -64166081 + ID_B1 SINE B4 1 222 -2 4 1025 357 43 0 0 chr11 57678105 57678152 -64165704 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1025 932 152 14 0 chr11 57679017 57679162 -64164694 - B1_Mur1 SINE Alu -1 148 2 4 1025 468 0 0 0 chr11 57679171 57679223 -64164633 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1025 294 248 17 25 chr11 57679253 57679342 -64164514 - B4A SINE B4 -196 96 5 4 1025 304 224 190 20 chr11 57679347 57679447 -64164409 - PB1D10 SINE Alu 0 117 1 4 1025 264 164 0 0 chr11 57679530 57679597 -64164259 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 4 1025 410 247 32 11 chr11 57679604 57679698 -64164158 - B1F SINE Alu -53 96 1 4 1025 182 87 0 0 chr11 57680321 57680344 -64163512 - L4 LINE RTE -1887 142 120 4 1025 511 327 7 0 chr11 57681013 57681166 -64162690 + RSINE1 SINE B4 1 154 -11 4 1025 978 190 39 15 chr11 57681179 57681382 -64162474 - B3 SINE B2 -8 208 1 4 1025 266 125 0 20 chr11 57681390 57681439 -64162417 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1025 242 56 0 27 chr11 57681933 57681970 -64161886 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1025 239 143 0 0 chr11 57682134 57682169 -64161687 - B3 SINE B2 -181 35 1 4 1025 708 149 104 0 chr11 57682175 57682309 -64161547 - B1_Mur1 SINE Alu -1 148 1 4 1025 291 93 0 0 chr11 57682592 57682635 -64161221 + (CTCA)n Simple_repeat Simple_repeat 4 46 0 4 1025 790 284 9 14 chr11 57684820 57685041 -64158815 + ID_B1 SINE B4 4 223 -1 4 1025 224 238 191 0 chr11 57685058 57685121 -64158735 + B1F SINE Alu 1 75 -74 4 1025 971 152 0 11 chr11 57685129 57685308 -64158548 + CT-rich Low_complexity Low_complexity 2 178 0 4 1025 1063 62 0 0 chr11 57685327 57685457 -64158399 - B1_Mm SINE Alu 0 147 18 4 1025 248 312 26 44 chr11 57685782 57685896 -64157960 + MIR SINE MIR 39 150 -58 4 1025 840 167 20 27 chr11 57686072 57686220 -64157636 + B1_Mur2 SINE Alu 1 147 -2 4 1025 365 306 0 51 chr11 57686842 57686947 -64156909 + B1F1 SINE Alu 7 107 -10 4 1025 243 0 0 0 chr11 57686947 57686974 -64156882 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 4 1025 356 306 0 51 chr11 57686974 57686985 -64156871 + PB1D10 SINE Alu 108 117 0 4 1025 974 238 9 37 chr11 57687018 57687232 -64156624 + B3 SINE B2 6 213 -3 4 1025 804 188 22 0 chr11 57687282 57687420 -64156436 + B1_Mus1 SINE Alu 1 141 -7 4 1025 180 0 0 0 chr11 57687428 57687448 -64156408 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1025 988 133 28 0 chr11 57687563 57687706 -64156150 - B1_Mur4 SINE Alu -3 147 1 4 1025 208 366 69 0 chr11 57688109 57688240 -64155616 - L2b LINE L2 -266 3109 2970 4 1025 319 295 44 25 chr11 57688756 57688916 -64154940 + RSINE1 SINE B4 3 165 0 4 1025 352 250 0 0 chr11 57689105 57689169 -64154687 + RSINE1 SINE B4 3 66 -99 4 1025 1240 90 18 0 chr11 57689166 57689333 -64154523 + B2_Mm2 SINE B2 12 181 -14 4 1025 494 82 360 20 chr11 57689361 57689461 -64154395 + B2_Mm2 SINE B2 47 180 -15 4 1025 216 0 0 0 chr11 57689462 57689486 -64154370 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1025 251 319 13 40 chr11 57689555 57689630 -64154226 + RSINE1 SINE B4 93 165 0 4 1025 1635 26 0 20 chr11 57690334 57690531 -64153325 + B2_Mm1a SINE B2 1 193 0 4 1025 648 163 121 23 chr11 57690641 57690773 -64153083 + B1_Mur1 SINE Alu 5 149 0 4 1025 216 301 13 52 chr11 57690787 57690864 -64152992 + B4A SINE B4 15 88 -204 4 1025 546 306 25 12 chr11 57690868 57691030 -64152826 + RSINE1 SINE B4 2 165 0 4 1025 763 153 113 15 chr11 57691046 57691179 -64152677 + B1_Mus2 SINE Alu 1 146 -1 4 1025 978 174 0 0 chr11 57691196 57691340 -64152516 - B1_Mur4 SINE Alu -5 145 2 4 1025 643 295 9 78 chr11 57691348 57691565 -64152291 + B4A SINE B4 91 292 0 4 1025 235 230 75 31 chr11 57691518 57691596 -64152260 + B3A SINE B2 120 203 -13 4 1025 509 157 15 15 chr11 57691602 57691738 -64152118 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 1025 301 255 175 10 chr11 57691750 57691853 -64152003 + PB1D7 SINE Alu 1 120 0 4 1025 1063 116 7 0 chr11 57691855 57692002 -64151854 + B1_Mus1 SINE Alu 1 148 0 4 1025 262 190 12 37 chr11 57692002 57692084 -64151772 + GA-rich Low_complexity Low_complexity 3 82 0 4 1025 266 250 25 61 chr11 57692089 57692170 -64151686 + ID_B1 SINE B4 78 157 -135 4 1025 1291 65 53 21 chr11 57692170 57692358 -64151498 - B2_Mm2 SINE B2 0 195 2 4 1025 245 326 6 93 chr11 57692358 57692438 -64151418 + B4 SINE B4 158 227 -65 4 1025 433 266 23 31 chr11 57692542 57692670 -64151186 + B1F SINE Alu 23 149 0 4 1025 335 239 0 0 chr11 57692674 57692741 -64151115 + ID4 SINE ID 3 69 -14 4 1025 646 181 6 28 chr11 57693108 57693253 -64150603 + CT-rich Low_complexity Low_complexity 39 180 0 4 1025 288 0 0 0 chr11 57693253 57693285 -64150571 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 4 1025 646 181 6 28 chr11 57693285 57693321 -64150535 + polypyrimidine Low_complexity Low_complexity 3 38 0 4 1025 1224 35 0 0 chr11 57693329 57693470 -64150386 - B1_Mus2 SINE Alu -6 141 1 4 1025 538 223 0 10 chr11 57693481 57693585 -64150271 - B3A SINE B2 -94 104 2 4 1025 360 142 47 24 chr11 57693586 57693681 -64150175 - L1M2 LINE L1 -821 5322 5223 4 1025 983 179 148 154 chr11 57693699 57693814 -64150042 + ORR1C2 LTR MaLR 2 131 -253 4 1025 1208 68 0 13 chr11 57693814 57693964 -64149892 + B1_Mus1 SINE Alu 1 148 0 4 1025 983 179 148 154 chr11 57693964 57694039 -64149817 + ORR1C2 LTR MaLR 132 171 -213 4 1025 795 21 0 0 chr11 57694039 57694132 -64149724 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 1025 983 179 148 154 chr11 57694132 57694284 -64149572 + ORR1C2 LTR MaLR 172 342 -42 4 1025 267 156 67 0 chr11 57694309 57694354 -64149502 - B1_Mus2 SINE Alu -98 49 2 4 1025 266 220 0 0 chr11 57694310 57694360 -64149496 - B4 SINE B4 -162 130 81 4 1025 419 218 137 10 chr11 57695108 57695210 -64148646 + B1F SINE Alu 3 117 -32 4 1025 396 0 0 0 chr11 57695210 57695254 -64148602 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 4 1025 191 182 0 0 chr11 57695291 57695324 -64148532 + MIR SINE MIR 113 145 -63 4 1025 184 341 34 0 chr11 57695456 57695544 -64148312 + MIR SINE MIR 55 145 -63 4 1025 460 243 10 20 chr11 57695630 57695743 -64148113 - PB1D7 SINE Alu -6 114 3 5 1025 1318 7 7 0 chr11 57695779 57695925 -64147931 + B1_Mm SINE Alu 1 147 0 5 1025 501 17 0 0 chr11 57695978 57696036 -64147820 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1025 339 279 13 0 chr11 57696265 57696344 -64147512 + ID4 SINE ID 4 83 0 5 1025 360 0 0 0 chr11 57697511 57697551 -64146305 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1025 279 0 0 0 chr11 57697889 57697920 -64145936 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 5 1025 220 289 160 42 chr11 57698009 57698128 -64145728 + MIRb SINE MIR 126 258 -10 5 1025 295 294 89 40 chr11 57698426 57698550 -64145306 + MLT1B LTR MaLR 1 130 -260 5 1025 348 24 0 0 chr11 57698554 57698595 -64145261 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 5 1025 1071 112 0 0 chr11 57698602 57698763 -64145093 + (GAAA)n Simple_repeat Simple_repeat 4 164 0 5 1025 1410 56 0 0 chr11 57698766 57698946 -64144910 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1025 405 0 0 0 chr11 57698947 57698992 -64144864 + (GAGAA)n Simple_repeat Simple_repeat 1 45 0 5 1025 309 51 0 0 chr11 57699212 57699251 -64144605 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 5 1025 321 78 0 0 chr11 57700066 57700081 -64143775 + (T)n Simple_repeat Simple_repeat 1 15 0 5 1025 236 30 30 0 chr11 57700081 57700114 -64143742 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1025 321 78 0 0 chr11 57700114 57700149 -64143707 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1025 381 241 0 33 chr11 57700149 57700239 -64143617 + MIRb SINE MIR 60 146 -122 5 1025 903 196 40 45 chr11 57700473 57700671 -64143185 + B3A SINE B2 2 198 0 5 1025 226 295 20 59 chr11 57700778 57700879 -64142977 + RMER12 LTR ERVK 744 840 -482 5 1025 1145 57 0 28 chr11 57700881 57701026 -64142830 - B1_Mus2 SINE Alu -6 141 1 5 1025 767 215 77 67 chr11 57701054 57701248 -64142608 + B3A SINE B2 3 198 0 5 1025 1308 271 111 24 chr11 57701423 57701884 -64141972 + RLTR20B3 LTR ERVK 21 521 -56 5 1025 387 232 12 0 chr11 57702024 57702106 -64141750 + B4A SINE B4 3 85 -207 5 1025 271 256 21 85 chr11 57702106 57702118 -64141738 + B3A SINE B2 3 90 -108 5 1025 530 231 9 9 chr11 57702206 57702311 -64141545 + MTEa LTR MaLR 5 109 -270 5 1025 1146 249 89 43 chr11 57702324 57702673 -64141183 + ORR1D2 LTR MaLR 6 370 0 5 1025 1838 138 21 7 chr11 57702712 57702996 -64140860 - RMER4B LTR ERVK -1 584 297 5 1025 500 287 135 62 chr11 57702990 57703198 -64140658 + MTEa LTR MaLR 143 365 -14 5 1025 497 300 80 130 chr11 57703233 57703478 -64140378 - L1M5 LINE L1 -2401 3745 3490 5 1025 417 302 34 25 chr11 57703478 57703597 -64140259 - PB1D9 SINE Alu 0 120 1 5 1025 497 300 80 130 chr11 57703597 57703728 -64140128 - L1M5 LINE L1 -2657 3489 3382 5 1025 701 272 36 52 chr11 57703728 57703922 -64139934 - B3A SINE B2 -4 194 4 5 1025 497 300 80 130 chr11 57703922 57703955 -64139901 - L1M5 LINE L1 -2765 3381 3365 5 1025 1282 182 116 68 chr11 57703955 57704030 -64139826 - ORR1D1 LTR MaLR 0 374 313 5 1025 1175 29 7 14 chr11 57704030 57704172 -64139684 + B1_Mus2 SINE Alu 1 141 -6 5 1025 450 0 0 0 chr11 57704174 57704224 -64139632 + (TAA)n Simple_repeat Simple_repeat 2 51 0 5 1025 1282 182 116 68 chr11 57704224 57704498 -64139358 - ORR1D1 LTR MaLR -62 312 5 5 1025 497 300 80 130 chr11 57704498 57704527 -64139329 - L1M5 LINE L1 -2782 3364 3348 5 1025 1213 214 10 0 chr11 57704527 57704733 -64139123 - B3 SINE B2 -7 209 2 5 1025 497 300 80 130 chr11 57704733 57704854 -64139002 - L1M5 LINE L1 -2799 3347 3215 5 1025 863 279 80 19 chr11 57704877 57705001 -64138855 - Lx9 LINE L1 -1 7643 7497 5 1025 803 144 43 60 chr11 57705001 57705185 -64138671 + B2_Mm2 SINE B2 2 182 -13 5 1025 863 279 80 19 chr11 57705185 57705524 -64138332 - Lx9 LINE L1 -148 7496 7152 5 1025 842 221 82 58 chr11 57705526 57705733 -64138123 - ID_B1 SINE B4 -2 222 11 5 1025 207 0 0 0 chr11 57705761 57705784 -64138072 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1025 1175 68 0 0 chr11 57705901 57706047 -64137809 - B1_Mus1 SINE Alu -1 147 2 5 1025 1383 236 36 71 chr11 57706147 57706540 -64137316 - MTEa LTR MaLR 0 379 1 5 1025 432 231 96 7 chr11 57706734 57706869 -64136987 - MER121 Unknown Unknown -155 257 111 5 1025 269 326 68 55 chr11 57707023 57707169 -64136687 + MIRc SINE MIR 50 197 -71 5 1025 795 173 15 0 chr11 57707175 57707308 -64136548 + B1_Mus2 SINE Alu 2 136 -11 5 1025 324 0 0 0 chr11 57707308 57707344 -64136512 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1025 581 318 0 0 chr11 57707357 57707508 -64136348 + RSINE1 SINE B4 2 152 -13 5 1025 932 174 58 29 chr11 57707976 57708183 -64135673 + B3 SINE B2 1 213 -3 5 1025 1254 112 37 5 chr11 57708193 57708382 -64135474 + B2_Mm2 SINE B2 1 195 0 5 1025 639 71 0 0 chr11 57708888 57708973 -64134883 + (AGGGGG)n Simple_repeat Simple_repeat 2 86 0 5 1025 249 33 0 0 chr11 57709116 57709146 -64134710 + (CCA)n Simple_repeat Simple_repeat 2 31 0 5 1025 862 184 7 7 chr11 57709392 57709540 -64134316 + B1_Mur2 SINE Alu 2 149 0 5 1025 197 33 0 32 chr11 57709564 57709595 -64134261 + (CACAA)n Simple_repeat Simple_repeat 5 34 0 5 1025 515 274 170 21 chr11 57710658 57710852 -64133004 + B4A SINE B4 5 227 -65 5 1025 986 126 0 7 chr11 57710865 57711009 -64132847 + B1_Mus2 SINE Alu 5 147 0 5 1025 225 326 22 0 chr11 57711156 57711182 -64132674 + B4A SINE B4 202 227 -65 5 1025 555 16 0 0 chr11 57711182 57711246 -64132610 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1025 225 326 22 0 chr11 57711246 57711308 -64132548 + B4A SINE B4 228 291 -1 5 1025 800 114 11 2 chr11 57711389 57711531 -64132325 - B1_Mur4 SINE Alu 0 150 2 5 1025 468 315 9 60 chr11 57711531 57711654 -64132202 + ID_B1 SINE B4 108 219 -5 5 1025 325 239 177 0 chr11 57711672 57711785 -64132071 + B1F2 SINE Alu 13 145 -4 5 1025 216 200 0 0 chr11 57711788 57711833 -64132023 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1025 26 40 0 20 chr11 57711833 57711861 -64131995 + AT_rich Low_complexity Low_complexity 1 28 0 5 1025 1311 34 0 0 chr11 57711861 57712009 -64131847 - B1_Mus1 SINE Alu 0 148 1 5 1025 26 40 0 20 chr11 57712009 57712031 -64131825 + AT_rich Low_complexity Low_complexity 1 22 0 5 1025 572 167 49 0 chr11 57712260 57712362 -64131494 - B1F SINE Alu 0 149 43 5 1025 569 265 79 12 chr11 57713263 57713427 -64130429 - MLT1C LTR MaLR -3 464 290 5 1025 612 0 0 0 chr11 57713442 57713510 -64130346 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1025 353 239 8 41 chr11 57713577 57713699 -64130157 - Lx8 LINE L1 -3 7470 7353 5 1025 201 108 0 0 chr11 57713785 57713822 -64130034 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1025 249 210 16 31 chr11 57713824 57713888 -64129968 - Lx8 LINE L1 -237 7236 7174 5 1025 849 213 94 20 chr11 57713897 57714098 -64129758 - B3 SINE B2 0 216 1 5 1025 432 231 63 21 chr11 57714099 57714299 -64129557 - B4 SINE B4 -58 234 1 5 1025 501 308 45 28 chr11 57714299 57714474 -64129382 - MLT1C LTR MaLR -167 223 46 5 1025 226 288 185 25 chr11 57714580 57714736 -64129120 + MLT1A0 LTR MaLR 143 323 -42 5 1025 487 316 74 11 chr11 57714736 57714912 -64128944 + B3 SINE B2 3 189 -27 5 1025 211 0 28 56 chr11 57714927 57714963 -64128893 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1025 458 276 191 0 chr11 57715013 57715165 -64128691 - ID_B1 SINE B4 -8 216 36 5 1025 1179 68 0 0 chr11 57715204 57715350 -64128506 + B1_Mus1 SINE Alu 1 146 -2 5 1025 579 144 0 0 chr11 57715704 57715801 -64128055 + (TCC)n Simple_repeat Simple_repeat 3 99 0 5 1025 26 30 0 0 chr11 57715919 57715952 -64127904 + AT_rich Low_complexity Low_complexity 1 33 0 5 1025 1264 55 5 9 chr11 57716034 57716253 -64127603 + (TTTC)n Simple_repeat Simple_repeat 1 217 0 5 1025 294 29 0 0 chr11 57716260 57716295 -64127561 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 5 1025 901 128 67 8 chr11 57716297 57716431 -64127425 - B1_Mus2 SINE Alu -5 142 1 5 1025 676 322 5 42 chr11 57716495 57716712 -64127144 + ID_B1 SINE B4 2 210 -14 5 1025 1335 105 21 0 chr11 57717156 57717347 -64126509 - B2_Mm2 SINE B2 0 195 1 5 1025 198 304 36 0 chr11 57717373 57717429 -64126427 - MIR SINE MIR -91 171 114 5 1025 207 0 0 0 chr11 57717638 57717661 -64126195 + (CCA)n Simple_repeat Simple_repeat 2 24 0 5 1025 221 156 0 0 chr11 57718277 57718309 -64125547 + MIR SINE MIR 114 145 -63 5 1025 529 231 98 8 chr11 57718471 57718593 -64125263 - ID_B1 SINE B4 -12 212 80 5 1025 335 296 52 81 chr11 57718629 57718802 -64125054 - Lx7 LINE L1 -1959 5737 5536 5 1025 180 97 0 0 chr11 57718810 57718841 -64125015 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1025 1041 129 0 7 chr11 57718842 57718990 -64124866 - B1_Mur4 SINE Alu -1 149 3 5 1025 450 249 54 37 chr11 57718991 57719159 -64124697 - L1M2 LINE L1 -691 5609 5443 5 1025 290 230 0 0 chr11 57719138 57719212 -64124644 + L1_Rod LINE L1 5687 5760 -87 5 1025 907 237 50 15 chr11 57719220 57719421 -64124435 + B3 SINE B2 8 215 -1 5 1025 477 0 0 0 chr11 57719442 57719495 -64124361 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 5 1025 555 56 0 0 chr11 57719496 57719567 -64124289 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 5 1025 916 225 50 0 chr11 57719584 57719784 -64124072 + B3 SINE B2 2 211 -5 5 1025 1057 36 7 7 chr11 57719801 57719940 -64123916 + B1_Mus2 SINE Alu 9 147 0 5 1025 369 62 0 0 chr11 57719942 57719990 -64123866 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 1025 719 88 10 10 chr11 57719999 57720102 -64123754 + B1_Mur4 SINE Alu 48 150 0 5 1025 843 216 132 15 chr11 57720992 57721189 -64122667 - ID_B1 SINE B4 -3 221 2 5 1025 234 0 0 0 chr11 57721488 57721514 -64122342 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 5 1025 730 216 179 16 chr11 57721860 57722044 -64121812 - B3 SINE B2 -2 214 1 5 1025 321 205 98 40 chr11 57722054 57722181 -64121675 - PB1D10 SINE Alu -4 145 1 5 1025 759 250 0 58 chr11 57722349 57722523 -64121333 + RSINE1 SINE B4 2 165 0 6 1025 438 108 0 0 chr11 57722530 57722595 -64121261 + (GA)n Simple_repeat Simple_repeat 1 65 0 6 1025 279 0 0 0 chr11 57722595 57722626 -64121230 + (GGA)n Simple_repeat Simple_repeat 2 32 0 6 1025 641 76 0 11 chr11 57722626 57722719 -64121137 + (GGAA)n Simple_repeat Simple_repeat 4 95 0 6 1025 568 294 20 7 chr11 57722912 57723059 -64120797 + RSINE1 SINE B4 2 150 -15 6 1025 396 118 0 0 chr11 57723060 57723128 -64120728 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1025 385 238 161 31 chr11 57723141 57723271 -64120585 + B4 SINE B4 72 218 -74 6 1025 637 196 0 0 chr11 57723167 57723279 -64120577 + PB1D9 SINE Alu 9 120 0 6 1025 187 79 0 50 chr11 57723811 57723851 -64120005 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 6 1025 252 276 101 74 chr11 57723948 57724144 -64119712 - MIR3 SINE MIR -13 195 3 6 1025 239 0 32 0 chr11 57724250 57724281 -64119575 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 6 1025 1028 228 39 0 chr11 57724329 57724535 -64119321 + ID_B1 SINE B4 5 218 -6 6 1025 1056 94 145 12 chr11 57724699 57724871 -64118985 + B2_Mm2 SINE B2 1 195 0 6 1025 296 291 0 11 chr11 57724964 57725051 -64118805 + B4A SINE B4 186 271 -21 6 1025 611 297 50 41 chr11 57725956 57726177 -64117679 + ID_B1 SINE B4 2 224 0 6 1025 221 0 0 33 chr11 57726202 57726232 -64117624 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1025 342 0 0 0 chr11 57726456 57726494 -64117362 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1025 495 0 0 0 chr11 57727729 57727784 -64116072 + (TTTTG)n Simple_repeat Simple_repeat 4 58 0 6 1025 841 312 8 8 chr11 57727797 57728033 -64115823 + B4A SINE B4 1 236 -56 6 1025 753 152 88 0 chr11 57728060 57728185 -64115671 + B1_Mur3 SINE Alu 6 141 -8 6 1025 23 0 0 0 chr11 57728189 57728212 -64115644 + AT_rich Low_complexity Low_complexity 1 23 0 6 1025 234 0 0 0 chr11 57728276 57728302 -64115554 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1025 1174 51 0 7 chr11 57728340 57728479 -64115377 + B1_Mus1 SINE Alu 2 139 -9 6 1025 224 30 30 0 chr11 57728479 57728512 -64115344 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1025 530 298 137 0 chr11 57728521 57728689 -64115167 + ID_B1 SINE B4 34 224 0 6 1025 367 237 22 133 chr11 57728708 57728888 -64114968 + B3A SINE B2 2 199 -17 6 1025 517 237 17 8 chr11 57728888 57729007 -64114849 + PB1D9 SINE Alu 1 120 0 6 1025 367 246 76 1048 chr11 57729007 57729025 -64114831 + B3A SINE B2 191 216 0 6 1025 663 167 0 106 chr11 57729057 57729069 -64114787 - B1_Mur4 SINE Alu 0 150 141 6 1025 200 59 29 0 chr11 57729069 57729103 -64114753 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1025 663 167 0 106 chr11 57729103 57729231 -64114625 - B1_Mur4 SINE Alu -10 140 25 6 1025 213 314 79 30 chr11 57729338 57729488 -64114368 - MIR3 SINE MIR -42 166 10 6 1025 781 176 0 53 chr11 57730194 57730344 -64113512 + B1_Mur4 SINE Alu 9 150 0 6 1025 779 210 43 0 chr11 57730525 57730663 -64113193 - B1_Mur1 SINE Alu -5 144 1 6 1025 983 177 0 0 chr11 57730697 57730844 -64113012 - B1_Mur4 SINE Alu -2 148 2 6 1025 476 247 168 54 chr11 57730861 57731028 -64112828 - B3A SINE B2 -12 186 1 6 1025 444 266 28 0 chr11 57731031 57731140 -64112716 - PB1D10 SINE Alu -1 116 5 6 1025 470 236 90 45 chr11 57731247 57731402 -64112454 - RSINE1 SINE B4 0 165 4 6 1025 437 219 51 26 chr11 57731407 57731524 -64112332 - PB1D7 SINE Alu 0 120 1 6 1025 661 246 78 47 chr11 57731579 57731771 -64112085 + B3A SINE B2 1 198 0 6 1025 1443 69 26 5 chr11 57731834 57732023 -64111833 - B2_Mm2 SINE B2 -1 194 2 6 1025 193 339 0 17 chr11 57732587 57732647 -64111209 + L2b LINE L2 3313 3371 -4 6 1025 251 257 68 0 chr11 57732682 57732756 -64111100 + ORR1E LTR MaLR 5 83 -311 6 1025 1247 42 0 0 chr11 57733498 57733640 -64110216 + B1_Mm SINE Alu 1 142 -5 6 1025 1171 117 0 43 chr11 57733652 57733840 -64110016 - B2_Mm2 SINE B2 -14 181 2 6 1025 714 244 81 54 chr11 57733864 57734050 -64109806 + B3A SINE B2 6 196 -2 6 1025 376 292 107 39 chr11 57734057 57734235 -64109621 + B3A SINE B2 2 191 -7 6 1025 494 234 36 9 chr11 57734243 57734355 -64109501 + B1_Mur3 SINE Alu 3 117 -32 6 1025 369 0 0 0 chr11 57734355 57734396 -64109460 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1025 206 259 167 0 chr11 57734636 57734690 -64109166 + MIR3 SINE MIR 109 171 -37 6 1025 315 0 0 0 chr11 57735191 57735226 -64108630 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1025 459 48 0 0 chr11 57735292 57735354 -64108502 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 6 1025 852 148 2 0 chr11 57735354 57735492 -64108364 - B1_Mus1 SINE Alu -9 139 1 6 1025 360 254 7 131 chr11 57735492 57735525 -64108331 - MT2B LTR ERVL -449 152 138 6 1025 611 236 29 69 chr11 57735516 57735689 -64108167 + ORR1E LTR MaLR 181 346 -13 6 1025 276 185 61 12 chr11 57735699 57735781 -64108075 - L1M4 LINE L1 -1387 4759 4674 6 1025 333 281 37 46 chr11 57735837 57735945 -64107911 + ID_B1 SINE B4 82 188 -36 6 1025 714 248 23 0 chr11 57735958 57736091 -64107765 + RSINE1 SINE B4 3 138 -27 6 1025 2316 99 3 42 chr11 57736094 57736375 -64107481 + ORR1A2 LTR MaLR 5 284 -43 6 1025 1659 26 5 0 chr11 57736375 57736566 -64107290 + B2_Mm1t SINE B2 2 193 0 6 1025 2316 99 3 42 chr11 57736566 57736620 -64107236 + ORR1A2 LTR MaLR 285 327 0 6 1025 969 93 14 21 chr11 57736759 57736902 -64106954 + B2_Mm2 SINE B2 1 142 -53 6 1025 1350 83 0 6 chr11 57737312 57737494 -64106362 + B2_Mm2 SINE B2 1 181 -14 6 1025 948 128 0 0 chr11 57737560 57737716 -64106140 + (TG)n Simple_repeat Simple_repeat 1 156 0 6 1025 303 372 45 15 chr11 57737811 57738013 -64105843 - MIR SINE MIR -3 259 52 6 1025 736 252 61 93 chr11 57738316 57738596 -64105260 + B4A SINE B4 4 274 -18 6 1025 426 39 0 0 chr11 57738625 57738677 -64105179 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1025 973 142 0 26 chr11 57738751 57738903 -64104953 + B1_Mur3 SINE Alu 1 148 -1 6 1025 208 0 62 0 chr11 57738903 57738935 -64104921 + (TAA)n Simple_repeat Simple_repeat 2 35 0 6 1025 404 165 0 23 chr11 57739097 57739184 -64104672 + CT-rich Low_complexity Low_complexity 2 86 0 6 1025 1177 82 0 0 chr11 57739186 57739332 -64104524 - B1_Mus2 SINE Alu 0 147 2 6 1025 2207 268 134 24 chr11 57739416 57740320 -64103536 - Lx8 LINE L1 -247 7226 6224 6 1025 978 179 7 4 chr11 57740521 57740803 -64103053 + (TGGG)n Simple_repeat Simple_repeat 1 282 0 6 1025 987 151 0 0 chr11 57740815 57741084 -64102772 + (TGGG)n Simple_repeat Simple_repeat 1 269 0 6 1025 1209 108 80 0 chr11 57741151 57741327 -64102529 + B2_Mm1t SINE B2 2 191 -2 6 1025 383 78 0 13 chr11 57741378 57741477 -64102379 + B2_Mm2 SINE B2 47 180 -15 6 1025 389 333 112 56 chr11 57741553 57741874 -64101982 + L2b LINE L2 3030 3368 -7 6 1025 236 30 30 0 chr11 57742020 57742053 -64101803 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1025 427 304 14 20 chr11 57742107 57742255 -64101601 + ID_B1 SINE B4 78 224 0 6 1025 217 327 59 50 chr11 57742325 57742444 -64101412 + MIR3 SINE MIR 4 123 -85 6 1025 1033 124 7 0 chr11 57742485 57742630 -64101226 + B1_Mus2 SINE Alu 1 146 -1 6 1025 840 220 30 40 chr11 57742647 57742846 -64101010 + B3A SINE B2 2 198 0 6 1025 319 258 0 15 chr11 57743976 57744043 -64099813 - RSINE1 SINE B4 -97 68 3 6 1025 301 290 29 114 chr11 57744079 57744122 -64099734 - ID_B1 SINE B4 -29 195 154 6 1025 1281 93 0 27 chr11 57744122 57744309 -64099547 - B2_Mm2 SINE B2 -12 183 2 6 1025 301 290 29 114 chr11 57744309 57744370 -64099486 - ID_B1 SINE B4 -71 153 100 6 1025 326 271 29 0 chr11 57744374 57744444 -64099412 - ID4 SINE ID -7 76 5 6 1025 375 286 87 20 chr11 57744508 57744530 -64099326 - B4A SINE B4 -46 246 210 6 1025 506 190 23 94 chr11 57744530 57744547 -64099309 - PB1D9 SINE Alu 0 120 103 6 1025 558 0 0 0 chr11 57744547 57744609 -64099247 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1025 375 286 87 20 chr11 57744609 57744719 -64099137 - B4A SINE B4 -83 209 88 6 1025 351 214 0 97 chr11 57744636 57744729 -64099127 - MT2B LTR ERVL -361 240 157 6 1025 351 0 0 0 chr11 57744769 57744808 -64099048 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1025 459 237 51 26 chr11 57744940 57745057 -64098799 + PB1D7 SINE Alu 1 120 0 6 1025 211 250 0 0 chr11 57745125 57745165 -64098691 + B1F1 SINE Alu 95 134 -15 6 1025 218 136 0 22 chr11 57745174 57745219 -64098637 + GA-rich Low_complexity Low_complexity 1 44 0 6 1025 1160 43 7 7 chr11 57746368 57746507 -64097349 + B1_Mm SINE Alu 3 141 -6 6 1025 194 0 39 0 chr11 57746509 57746535 -64097321 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1025 531 0 0 0 chr11 57747111 57747170 -64096686 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1025 1099 112 6 6 chr11 57747232 57747412 -64096444 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1025 817 151 14 7 chr11 57747442 57747582 -64096274 - B1_Mur3 SINE Alu 0 149 9 6 1025 371 266 30 133 chr11 57747444 57747609 -64096247 - B4 SINE B4 -69 223 76 6 1025 263 28 0 27 chr11 57748499 57748536 -64095320 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1025 649 222 67 67 chr11 57748537 57748701 -64095155 - RSINE1 SINE B4 0 165 2 6 1025 1461 83 10 5 chr11 57748947 57749141 -64094715 - B2_Mm2 SINE B2 0 195 1 6 1025 383 330 22 67 chr11 57749244 57749468 -64094388 - ID_B1 SINE B4 -9 215 2 6 1025 214 260 127 55 chr11 57749610 57749720 -64094136 + MIR SINE MIR 44 161 -101 6 1025 189 341 91 23 chr11 57749864 57749996 -64093860 - MIR3 SINE MIR -23 185 45 7 1025 422 321 69 0 chr11 57750003 57750134 -64093722 + B1F1 SINE Alu 7 146 -3 7 1025 1099 219 10 0 chr11 57750160 57750356 -64093500 + B3 SINE B2 9 206 -10 7 1025 212 163 0 0 chr11 57750407 57750450 -64093406 + T-rich Low_complexity Low_complexity 1 43 0 7 1025 1270 53 0 40 chr11 57750460 57750635 -64093221 + B2_Mm2 SINE B2 1 168 -27 7 1025 186 150 0 0 chr11 57750637 57750677 -64093179 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 7 1025 680 243 45 60 chr11 57750677 57750878 -64092978 - ID_B1 SINE B4 -12 212 15 7 1025 1244 104 50 0 chr11 57750910 57751092 -64092764 - B2_Mm1t SINE B2 -1 192 2 7 1025 358 233 131 37 chr11 57751095 57751202 -64092654 - PB1D9 SINE Alu 0 120 4 7 1025 426 284 134 7 chr11 57752219 57752361 -64091495 + MLT2B4 LTR ERVL 42 201 -355 7 1025 2182 120 20 132 chr11 57752376 57752817 -64091039 - ORR1B1 LTR MaLR -2 392 1 7 1025 2869 107 93 178 chr11 57752817 57753386 -64090470 - ORR1B1-int LTR MaLR 0 1963 972 7 1025 1327 70 0 6 chr11 57753503 57753516 -64090340 - B2_Mm2 SINE B2 -23 172 160 7 1025 242 29 0 28 chr11 57753516 57753552 -64090304 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7 1025 1327 70 0 6 chr11 57753552 57753711 -64090145 - B2_Mm2 SINE B2 -36 159 1 7 1025 1785 245 83 50 chr11 57753712 57753732 -64090124 - RMER19C LTR ERVK -4 607 593 7 1025 1209 54 0 20 chr11 57753732 57753883 -64089973 - B1_Mus1 SINE Alu 0 148 1 7 1025 1785 245 83 50 chr11 57753883 57754365 -64089491 - RMER19C LTR ERVK -19 592 88 7 1025 4238 78 35 5 chr11 57754363 57754964 -64088892 - ORR1B1-int LTR MaLR -505 1458 840 7 1025 1394 99 0 116 chr11 57754964 57755205 -64088651 + ORR1A3 LTR MaLR 1 213 -113 7 1025 1203 143 109 67 chr11 57755217 57755456 -64088400 - MT2B LTR ERVL -328 273 25 7 1025 3774 154 20 103 chr11 57755334 57756136 -64087720 - ORR1B1-int LTR MaLR -1228 735 1 7 1025 2428 118 12 89 chr11 57756136 57756563 -64087293 - ORR1B1 LTR MaLR 0 394 1 7 1025 299 305 73 92 chr11 57756586 57756598 -64087258 + MLT2B4 LTR ERVL 321 332 -224 7 1025 576 42 0 0 chr11 57756598 57756669 -64087187 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1025 299 305 73 92 chr11 57756669 57756862 -64086994 + MLT2B4 LTR ERVL 333 522 -34 7 1025 1607 52 0 0 chr11 57756895 57757087 -64086769 + B2_Mm1a SINE B2 2 193 0 7 1025 241 333 61 98 chr11 57757362 57757525 -64086331 + B4 SINE B4 66 222 -70 7 1025 665 225 28 42 chr11 57757386 57757530 -64086326 + B1F1 SINE Alu 6 147 -2 7 1025 1513 78 0 0 chr11 57757530 57757721 -64086135 + B2_Mm1a SINE B2 2 192 -1 7 1025 1241 103 16 47 chr11 57757733 57757926 -64085930 + B2_Mm2 SINE B2 2 188 -7 7 1025 1319 115 11 0 chr11 57757934 57758125 -64085731 + B2_Mm1t SINE B2 1 193 0 7 1025 626 272 6 58 chr11 57758139 57758311 -64085545 + RSINE1 SINE B4 3 165 0 7 1025 779 21 10 0 chr11 57758330 57758427 -64085429 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 7 1025 24 32 0 0 chr11 57758428 57758459 -64085397 + AT_rich Low_complexity Low_complexity 1 31 0 7 1025 689 147 0 27 chr11 57758577 57758689 -64085167 - B1_Mur4 SINE Alu -1 149 41 7 1025 290 319 0 0 chr11 57758691 57758807 -64085049 + CT-rich Low_complexity Low_complexity 3 118 0 7 1025 182 337 42 32 chr11 57759616 57759711 -64084145 + MIRm SINE MIR 88 183 -93 7 1025 548 84 34 0 chr11 57759896 57759994 -64083862 + B1_Mus2 SINE Alu 1 113 -37 7 1025 672 272 27 16 chr11 57759994 57760181 -64083675 + B3A SINE B2 1 189 -9 7 1025 736 240 11 95 chr11 57760197 57760386 -64083470 + B3A SINE B2 24 196 -2 7 1025 450 127 0 0 chr11 57760386 57760457 -64083399 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1025 1159 75 0 13 chr11 57760498 57760647 -64083209 - B1_Mus1 SINE Alu 0 148 2 7 1025 270 133 0 0 chr11 57760666 57760708 -64083148 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1025 1231 41 7 0 chr11 57760708 57760854 -64083002 - B1_Mm SINE Alu 0 147 1 7 1025 270 133 0 0 chr11 57760854 57760871 -64082985 + (T)n Simple_repeat Simple_repeat 1 17 0 7 1025 574 240 8 37 chr11 57761014 57761148 -64082708 - ORR1E LTR MaLR -226 133 4 7 1025 513 131 0 0 chr11 57761273 57761357 -64082499 + (CA)n Simple_repeat Simple_repeat 2 85 0 7 1025 979 48 0 16 chr11 57761489 57761616 -64082240 + B1_Mus2 SINE Alu 23 147 0 7 1025 542 213 0 0 chr11 57761629 57761723 -64082133 - B1F2 SINE Alu -55 94 1 7 1025 390 269 38 19 chr11 57761633 57761739 -64082117 - B4 SINE B4 -113 179 72 7 1025 332 120 0 39 chr11 57761742 57761820 -64082036 + (TTGG)n Simple_repeat Simple_repeat 1 75 0 7 1025 1040 111 6 47 chr11 57761825 57761996 -64081860 - B2_Mm1t SINE B2 -3 190 27 7 1025 330 112 48 48 chr11 57762704 57762793 -64081063 - B2_Mm2 SINE B2 -127 89 1 7 1025 317 270 35 123 chr11 57762820 57762934 -64080922 - PB1D7 SINE Alu 0 120 17 7 1025 630 0 0 0 chr11 57762956 57763026 -64080830 + (TTTTA)n Simple_repeat Simple_repeat 2 71 0 7 1025 744 174 0 50 chr11 57763030 57763061 -64080795 - B1_Mur4 SINE Alu -17 133 104 7 1025 2513 74 3 60 chr11 57763061 57763408 -64080448 - ORR1A2 LTR MaLR 0 327 1 7 1025 744 174 0 50 chr11 57763408 57763515 -64080341 - B1_Mur4 SINE Alu -47 103 2 7 1025 21 57 0 0 chr11 57763515 57763550 -64080306 + AT_rich Low_complexity Low_complexity 1 35 0 7 1025 2140 162 62 5 chr11 57763628 57764013 -64079843 + MTD LTR MaLR 10 416 -3 7 1025 596 202 0 70 chr11 57764082 57764210 -64079646 + B1_Mur2 SINE Alu 5 123 -26 7 1025 308 162 224 26 chr11 57764209 57764285 -64079571 + B3A SINE B2 57 147 -51 7 1025 288 0 0 0 chr11 57764295 57764327 -64079529 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1025 317 237 39 4 chr11 57764358 57764458 -64079398 + B1_Mur2 SINE Alu 40 149 0 7 1025 1210 54 0 20 chr11 57764460 57764611 -64079245 + B1_Mus1 SINE Alu 1 148 0 7 1025 208 258 136 0 chr11 57764858 57764924 -64078932 - MIRc SINE MIR -106 162 88 7 1025 379 244 193 23 chr11 57765519 57765695 -64078161 + B3 SINE B2 1 206 -10 7 1025 1058 97 14 0 chr11 57765751 57765896 -64077960 + B1_Mus1 SINE Alu 2 148 0 7 1025 263 227 152 11 chr11 57766360 57766471 -64077385 - MIR SINE MIR -18 190 66 7 1025 439 231 28 0 chr11 57766472 57766580 -64077276 + PB1D10 SINE Alu 5 115 -2 7 1025 631 248 7 36 chr11 57766581 57766663 -64077193 + ID SINE ID 3 80 -144 7 1025 296 287 27 164 chr11 57766663 57766748 -64077108 + B1_Mur2 SINE Alu 1 81 -68 7 1025 720 207 67 0 chr11 57766748 57766883 -64076973 + B1_Mur4 SINE Alu 2 145 -5 7 1025 296 287 27 164 chr11 57766883 57766943 -64076913 + B1_Mur2 SINE Alu 82 126 -23 7 1025 311 157 99 14 chr11 57766912 57766983 -64076873 + B1F SINE Alu 68 144 -5 7 1025 1100 101 0 13 chr11 57767032 57767182 -64076674 + B1_Mus1 SINE Alu 1 148 0 7 1025 984 158 198 0 chr11 57767643 57767820 -64076036 + B3 SINE B2 1 212 -4 7 1025 185 149 43 0 chr11 57767827 57767874 -64075982 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 7 1025 204 293 96 12 chr11 57767916 57767999 -64075857 - MIRc SINE MIR -135 133 44 7 1025 890 215 24 19 chr11 57768792 57769005 -64074851 + B3 SINE B2 1 214 -2 7 1025 277 187 23 196 chr11 57769025 57769158 -64074698 + MT2B LTR ERVL 155 264 -337 7 1025 689 156 54 8 chr11 57769050 57769179 -64074677 + B1_Mur4 SINE Alu 6 140 -10 7 1025 377 250 173 0 chr11 57769186 57769290 -64074566 + RSINE1 SINE B4 1 122 -43 7 1025 1072 66 7 0 chr11 57769294 57769430 -64074426 + B1_Mus1 SINE Alu 11 147 -1 7 1025 374 0 22 0 chr11 57769432 57769478 -64074378 + (TAA)n Simple_repeat Simple_repeat 2 48 0 7 1025 345 259 45 11 chr11 57769491 57769593 -64074263 + B1_Mur2 SINE Alu 10 120 -7 7 1025 23 78 0 0 chr11 57769593 57769644 -64074212 + AT_rich Low_complexity Low_complexity 1 51 0 7 1025 761 230 13 0 chr11 57769651 57769803 -64074053 + ID_B1 SINE B4 5 158 -66 7 1025 504 220 0 0 chr11 57769919 57770037 -64073819 + CT-rich Low_complexity Low_complexity 3 120 0 7 1025 1112 76 14 0 chr11 57770053 57770198 -64073658 + B1_Mus2 SINE Alu 1 147 0 7 1025 180 0 0 0 chr11 57770198 57770218 -64073638 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1025 242 108 0 0 chr11 57770255 57770292 -64073564 - B2_Mm2 SINE B2 -158 37 1 7 1025 1036 84 14 20 chr11 57770301 57770313 -64073543 - B1_Mus2 SINE Alu -2 145 136 7 1025 716 92 8 0 chr11 57770313 57770432 -64073424 + (TTTC)n Simple_repeat Simple_repeat 1 120 0 7 1025 1036 84 14 20 chr11 57770432 57770565 -64073291 - B1_Mus2 SINE Alu -12 135 1 7 1025 352 160 0 100 chr11 57770570 57770582 -64073274 - PB1D10 SINE Alu -1 116 36 7 1025 401 244 0 0 chr11 57770582 57770660 -64073196 - ID_B1 SINE B4 -30 194 117 7 1025 235 206 13 25 chr11 57770783 57770874 -64072982 - PB1D9 SINE Alu -35 112 24 7 1025 573 235 25 42 chr11 57770882 57771002 -64072854 + RSINE1 SINE B4 8 125 -40 7 1025 1271 48 0 0 chr11 57771072 57771219 -64072637 + B1_Mus2 SINE Alu 1 147 0 7 1025 456 289 32 16 chr11 57771696 57771819 -64072037 - ID_B1 SINE B4 -17 207 83 7 1025 482 284 8 8 chr11 57772428 57772545 -64071311 + RSINE1 SINE B4 3 119 -46 7 1025 1001 97 8 0 chr11 57772545 57772679 -64071177 + B1_Mus1 SINE Alu 2 136 -12 7 1025 2828 27 36 0 chr11 57772679 57773009 -64070847 + ORR1A1 LTR MaLR 5 346 0 7 1025 278 250 0 0 chr11 57773036 57773092 -64070764 + RSINE1 SINE B4 108 163 -2 7 1025 353 288 34 8 chr11 57773462 57773581 -64070275 - Arthur1B DNA Tip100 -157 1068 947 7 1025 182 33 0 62 chr11 57773756 57773788 -64070068 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1025 448 202 9 100 chr11 57773913 57774023 -64069833 - PB1D9 SINE Alu -16 104 5 7 1025 667 164 24 39 chr11 57774057 57774184 -64069672 + B1_Mus2 SINE Alu 2 126 -21 7 1025 243 79 0 0 chr11 57774184 57774222 -64069634 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 1025 679 118 108 23 chr11 57774911 57775041 -64068815 + B1_Mur3 SINE Alu 9 149 0 8 1025 405 273 45 18 chr11 57775036 57775148 -64068708 + ID_B1 SINE B4 97 211 -13 8 1025 351 0 0 0 chr11 57775148 57775187 -64068669 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 8 1025 964 229 0 45 chr11 57775187 57775388 -64068468 + B3 SINE B2 1 192 -24 8 1025 234 91 0 0 chr11 57775389 57775422 -64068434 + (ATG)n Simple_repeat Simple_repeat 2 34 0 8 1025 418 237 10 31 chr11 57775422 57775518 -64068338 + PB1D9 SINE Alu 25 118 -2 8 1025 298 225 19 9 chr11 57775579 57775687 -64068169 - B1F SINE Alu -2 118 14 8 1025 296 162 229 29 chr11 57775729 57775799 -64068057 - B1_Mur1 SINE Alu 0 149 66 8 1025 291 139 0 0 chr11 57776673 57776716 -64067140 - ID_B1 SINE B4 -94 130 88 8 1025 278 133 0 0 chr11 57776677 57776722 -64067134 - B1F2 SINE Alu -104 45 1 8 1025 1256 34 0 20 chr11 57777384 57777533 -64066323 - B1_Mus2 SINE Alu 0 147 2 8 1025 26 50 0 0 chr11 57777562 57777602 -64066254 + AT_rich Low_complexity Low_complexity 1 40 0 8 1025 401 263 99 57 chr11 57777637 57777778 -64066078 - B1F2 SINE Alu -2 147 1 8 1025 290 293 81 105 chr11 57777865 57778075 -64065781 + MT2B2 LTR ERVL 60 264 -320 8 1025 840 129 0 36 chr11 57777964 57778101 -64065755 + B1_Mus1 SINE Alu 7 138 -10 8 1025 207 0 0 0 chr11 57778101 57778124 -64065732 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1025 680 212 53 0 chr11 57778464 57778596 -64065260 + ID_B1 SINE B4 86 224 0 8 1025 627 250 5 131 chr11 57778706 57778904 -64064952 + B3 SINE B2 1 173 -43 8 1025 510 145 0 0 chr11 57778907 57778983 -64064873 + B1_Mus2 SINE Alu 63 138 -9 8 1025 310 329 12 0 chr11 57779057 57779139 -64064717 + ID4_ SINE ID 1 83 0 8 1025 654 122 160 16 chr11 57779298 57779423 -64064433 - B1_Mur3 SINE Alu -1 148 6 8 1025 206 174 22 0 chr11 57779441 57779487 -64064369 + CT-rich Low_complexity Low_complexity 2 48 0 8 1025 278 141 364 0 chr11 57779490 57779589 -64064267 - B2_Mm2 SINE B2 0 195 61 8 1025 333 0 0 0 chr11 57779692 57779729 -64064127 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 8 1025 1084 63 35 0 chr11 57779745 57779887 -64063969 + B1_Mus1 SINE Alu 2 148 0 8 1025 187 73 0 68 chr11 57779890 57779926 -64063930 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1025 1619 37 5 0 chr11 57779926 57780117 -64063739 + B2_Mm1t SINE B2 2 193 0 8 1025 187 73 0 68 chr11 57780117 57780124 -64063732 + (TAAAAA)n Simple_repeat Simple_repeat 6 12 0 8 1025 1212 125 15 20 chr11 57780682 57780878 -64062978 + B2_Mm2 SINE B2 1 195 0 8 1025 926 96 0 0 chr11 57781002 57781127 -64062729 + B1_Mus2 SINE Alu 23 147 0 8 1025 206 105 26 0 chr11 57781130 57781168 -64062688 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1025 1232 68 0 0 chr11 57781190 57781337 -64062519 - B1_Mus2 SINE Alu 0 147 1 8 1025 685 260 83 0 chr11 57781347 57781539 -64062317 - B3 SINE B2 -4 212 5 8 1025 4011 58 12 18 chr11 57781560 57782072 -64061784 + RLTR1B LTR ERV1 4 512 0 8 1025 2079 160 44 0 chr11 57782217 57782579 -64061277 - ORR1C1 LTR MaLR 0 378 1 8 1025 440 325 8 16 chr11 57782583 57782705 -64061151 + ID_B1 SINE B4 32 152 -72 8 1025 519 248 0 0 chr11 57782682 57782783 -64061073 - B3A SINE B2 -96 102 2 8 1025 568 231 162 25 chr11 57782843 57783047 -64060809 + 7SK RNA RNA 1 232 -99 8 1025 850 198 90 18 chr11 57783281 57783466 -64060390 + B3A SINE B2 1 180 -15 8 1025 665 258 0 0 chr11 57783466 57783598 -64060258 + B1_Mur2 SINE Alu 2 133 -16 8 1025 503 297 42 42 chr11 57783604 57783748 -64060108 + RSINE1 SINE B4 19 162 -3 8 1025 539 198 147 0 chr11 57784454 57784570 -64059286 - B1_Mur4 SINE Alu -17 133 1 8 1025 240 143 0 0 chr11 57784647 57784689 -64059167 + (TCTCC)n Simple_repeat Simple_repeat 1 42 0 8 1025 237 162 27 0 chr11 57784690 57784727 -64059129 - PB1D9 SINE Alu -16 104 67 8 1025 216 256 0 0 chr11 57784724 57784763 -64059093 - B1_Mus1 SINE Alu -97 51 13 8 1025 772 167 34 27 chr11 57784829 57784977 -64058879 - B1_Mur2 SINE Alu 0 149 1 8 1025 641 345 16 12 chr11 57785442 57785700 -64058156 - B4A SINE B4 -3 289 31 8 1025 237 65 0 0 chr11 57785703 57785734 -64058122 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1025 292 258 32 19 chr11 57785752 57785910 -64057946 + (TG)n Simple_repeat Simple_repeat 1 160 0 8 1025 355 263 38 57 chr11 57785913 57786018 -64057838 - PB1D10 SINE Alu -3 114 12 8 1025 306 234 30 45 chr11 57786060 57786127 -64057729 - ID4 SINE ID -14 69 4 8 1025 389 200 28 112 chr11 57786172 57786279 -64057577 + MT2B LTR ERVL 160 257 -344 8 1025 946 79 0 16 chr11 57786197 57786326 -64057530 + B1_Mus1 SINE Alu 22 148 0 8 1025 242 29 0 28 chr11 57786331 57786367 -64057489 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1025 364 295 0 0 chr11 57786387 57786465 -64057391 - ID_B1 SINE B4 -62 162 85 8 1025 236 267 40 0 chr11 57787056 57787131 -64056725 + MIR SINE MIR 64 141 -67 8 1025 399 290 7 44 chr11 57787281 57787418 -64056438 - Charlie19a DNA Charlie -188 198 67 8 1025 294 339 78 28 chr11 57787741 57787920 -64055936 + MIRc SINE MIR 24 211 -57 8 1025 287 145 145 84 chr11 57787952 57788035 -64055821 + MT2B2 LTR ERVL 152 239 -345 8 1025 686 146 97 8 chr11 57787975 57788099 -64055757 + B1_Mur1 SINE Alu 14 148 -1 8 1025 746 244 46 66 chr11 57788196 57788393 -64055463 + B3A SINE B2 1 193 -5 8 1025 1113 89 0 27 chr11 57788500 57788650 -64055206 + B1_Mm SINE Alu 2 147 0 8 1025 247 148 0 85 chr11 57788650 57788709 -64055147 + A-rich Low_complexity Low_complexity 1 54 0 8 1025 27 29 0 0 chr11 57788811 57788845 -64055011 + AT_rich Low_complexity Low_complexity 1 34 0 8 1025 370 243 0 0 chr11 57788849 57788923 -64054933 + PB1D10 SINE Alu 10 83 -34 8 1025 351 0 0 0 chr11 57789285 57789324 -64054532 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1025 538 248 57 50 chr11 57789405 57789545 -64054311 + ID_B1 SINE B4 43 183 -41 8 1025 374 286 62 0 chr11 57789740 57789852 -64054004 - PB1 SINE Alu -3 124 6 8 1025 24 0 0 0 chr11 57789858 57789882 -64053974 + AT_rich Low_complexity Low_complexity 1 24 0 8 1025 786 153 0 127 chr11 57789897 57790062 -64053794 + B1_Mur3 SINE Alu 1 144 -5 8 1025 526 242 12 92 chr11 57790130 57790294 -64053562 + RSINE1 SINE B4 5 155 -10 8 1025 852 151 0 0 chr11 57790401 57790547 -64053309 + CT-rich Low_complexity Low_complexity 3 148 0 8 1025 1045 66 73 0 chr11 57790570 57790707 -64053149 - B1_Mus2 SINE Alu 0 147 1 8 1025 805 206 107 41 chr11 57790822 57791019 -64052837 + B3 SINE B2 7 216 0 8 1025 333 169 16 33 chr11 57791047 57791108 -64052748 - B1_Mus1 SINE Alu -88 60 1 8 1025 280 241 23 81 chr11 57791108 57791133 -64052723 - B4A SINE B4 -148 144 64 8 1025 198 0 0 0 chr11 57791688 57791710 -64052146 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1025 189 0 0 0 chr11 57791790 57791811 -64052045 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 8 1025 1234 36 0 0 chr11 57791813 57791953 -64051903 - B1_Mm SINE Alu -6 141 2 8 1025 259 125 0 0 chr11 57791959 57792007 -64051849 - B3 SINE B2 0 216 169 8 1025 25 0 0 0 chr11 57792021 57792046 -64051810 + AT_rich Low_complexity Low_complexity 1 25 0 8 1025 460 274 34 0 chr11 57792092 57792209 -64051647 - RSINE1 SINE B4 -43 122 2 8 1025 351 113 0 0 chr11 57792308 57792361 -64051495 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1025 1191 68 0 0 chr11 57792361 57792507 -64051349 - B1_Mm SINE Alu 0 147 2 8 1025 569 324 53 24 chr11 57792604 57792851 -64051005 - B4A SINE B4 -36 256 3 8 1025 225 387 81 37 chr11 57792851 57793012 -64050844 + MER117 DNA MER1_type 23 190 -7 8 1025 196 366 52 37 chr11 57793030 57793166 -64050690 - MIR3 SINE MIR -63 145 8 8 1025 307 276 28 93 chr11 57793484 57793563 -64050293 - Charlie4a DNA MER1_type 0 508 431 8 1025 186 43 0 0 chr11 57793563 57793586 -64050270 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1025 766 86 188 0 chr11 57793586 57793703 -64050153 - B1_Mus1 SINE Alu -9 139 1 8 1025 307 276 28 93 chr11 57793703 57793730 -64050126 - Charlie4a DNA MER1_type -78 430 409 8 1025 229 300 139 10 chr11 57793730 57793831 -64050025 + PB1D10 SINE Alu 4 117 0 8 1025 515 257 18 9 chr11 57794317 57794427 -64049429 - RSINE1 SINE B4 -8 157 47 8 1025 485 235 174 37 chr11 57794726 57794916 -64048940 - ID_B1 SINE B4 -8 216 1 8 1025 255 213 0 0 chr11 57794949 57794996 -64048860 - ID_B1 SINE B4 -80 144 98 8 1025 206 326 30 40 chr11 57795185 57795284 -64048572 - MIR SINE MIR -77 131 34 8 1025 316 322 16 8 chr11 57795564 57795664 -64048192 + PB1D10 SINE Alu 1 99 -50 8 1025 1161 61 0 33 chr11 57795678 57795831 -64048025 + B1_Mus1 SINE Alu 1 148 0 8 1025 300 213 365 10 chr11 57795874 57795970 -64047886 + RSINE1 SINE B4 2 131 -34 8 1025 505 227 182 0 chr11 57796020 57796152 -64047704 + ID_B1 SINE B4 2 157 -67 8 1025 402 264 48 44 chr11 57796198 57796339 -64047517 + RSINE1 SINE B4 1 143 -22 8 1025 737 179 185 0 chr11 57796342 57796493 -64047363 + B3 SINE B2 33 211 -5 8 1025 351 0 0 0 chr11 57796531 57796570 -64047286 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1025 853 61 0 9 chr11 57796570 57796676 -64047180 - B1_Mus1 SINE Alu -9 139 34 9 1025 325 239 250 0 chr11 57796707 57796799 -64047057 + PB1D10 SINE Alu 3 117 0 9 1025 230 209 0 0 chr11 57797096 57797139 -64046717 - ID_B1 SINE B4 -5 219 177 9 1025 189 0 0 0 chr11 57797526 57797547 -64046309 + (TTG)n Simple_repeat Simple_repeat 1 21 0 9 1025 534 147 16 13 chr11 57797548 57797656 -64046200 - B1_Mur4 SINE Alu -10 110 2 9 1025 580 281 7 14 chr11 57797658 57797806 -64046050 - B1_Mur1 SINE Alu -1 148 2 9 1025 340 273 36 135 chr11 57797813 57797952 -64045904 - ID_B1 SINE B4 -39 185 67 9 1025 251 272 195 34 chr11 57798169 57798287 -64045569 + B4A SINE B4 76 212 -80 9 1025 524 217 99 8 chr11 57798237 57798358 -64045498 + B3 SINE B2 80 211 -5 9 1025 471 246 7 100 chr11 57798486 57798626 -64045230 + ID_B1 SINE B4 96 222 -2 9 1025 242 32 0 0 chr11 57798645 57798676 -64045180 + B3 SINE B2 11 41 -175 9 1025 342 273 27 18 chr11 57798664 57798676 -64045180 + ID_B1 SINE B4 70 182 -42 9 1025 601 141 40 10 chr11 57798676 57798776 -64045080 + B1_Mus1 SINE Alu 1 103 -45 9 1025 380 237 256 44 chr11 57798777 57798914 -64044942 + B3 SINE B2 45 210 -6 9 1025 834 191 0 7 chr11 57798936 57799084 -64044772 + B1_Mur4 SINE Alu 4 150 0 9 1025 279 0 0 0 chr11 57799090 57799121 -64044735 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1025 415 275 88 34 chr11 57799132 57799279 -64044577 + B3 SINE B2 1 155 -61 9 1025 228 200 19 126 chr11 57799315 57799418 -64044438 + PB1 SINE Alu 36 127 0 9 1025 1089 76 7 7 chr11 57799576 57799722 -64044134 - B1_Mus2 SINE Alu -1 146 1 9 1025 247 191 53 93 chr11 57799722 57799786 -64044070 - PB1D10 SINE Alu -9 108 46 9 1025 474 184 24 88 chr11 57800282 57800407 -64043449 - PB1D7 SINE Alu -3 117 1 9 1025 229 336 41 91 chr11 57800433 57800475 -64043381 + MLT1H LTR MaLR 186 226 -323 9 1025 1090 179 256 55 chr11 57800475 57800783 -64043073 + ORR1D2 LTR MaLR 1 370 0 9 1025 229 336 41 91 chr11 57800783 57800861 -64042995 + MLT1H LTR MaLR 227 300 -249 9 1025 514 254 94 8 chr11 57800966 57801093 -64042763 + ID_B1 SINE B4 84 221 -3 9 1025 381 283 0 42 chr11 57801104 57801200 -64042656 + RSINE1 SINE B4 12 103 -62 9 1025 3613 50 0 2 chr11 57801223 57801661 -64042195 - L1Md_F3 LINE L1 -14 6570 6134 9 1025 255 329 0 14 chr11 57801662 57801736 -64042120 + RSINE1 SINE B4 93 165 0 9 1025 667 318 90 38 chr11 57801916 57802204 -64041652 - LTR41 LTR ERVL -67 701 399 9 1025 23 0 0 0 chr11 57802513 57802536 -64041320 + AT_rich Low_complexity Low_complexity 1 23 0 9 128 913 187 0 7 chr11 57802627 57802767 -64041089 + B1_Mur4 SINE Alu 1 140 -10 9 1026 671 65 11 0 chr11 57802767 57802860 -64040996 + (GA)n Simple_repeat Simple_repeat 1 94 0 9 1026 247 305 87 87 chr11 57803058 57803241 -64040615 - MT2B2 LTR ERVL -223 361 179 9 1026 403 288 106 0 chr11 57803122 57803254 -64040602 - B1_Mur1 SINE Alu -2 147 2 9 1026 221 326 45 34 chr11 57803184 57803273 -64040583 - B4 SINE B4 -136 156 67 9 1026 806 261 33 51 chr11 57803266 57803480 -64040376 - ID_B1 SINE B4 -9 215 6 9 1026 939 70 0 0 chr11 57803564 57803692 -64040164 + (TTCTC)n Simple_repeat Simple_repeat 4 131 0 9 1026 266 0 29 0 chr11 57803713 57803747 -64040109 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1026 589 151 311 0 chr11 57803747 57803853 -64040003 - B1_Mus1 SINE Alu -8 140 2 9 1026 1170 88 0 0 chr11 57804048 57804195 -64039661 + B1_Mm SINE Alu 1 147 0 9 1026 362 241 111 17 chr11 57804208 57804308 -64039548 + PB1D9 SINE Alu 1 107 -13 9 1026 804 74 0 0 chr11 57804315 57804436 -64039420 + (GA)n Simple_repeat Simple_repeat 2 122 0 9 1026 371 188 0 0 chr11 57804634 57804698 -64039158 + ID_B1 SINE B4 92 155 -69 9 1026 526 264 99 22 chr11 57804700 57804882 -64038974 + B3A SINE B2 3 198 0 9 1026 647 237 44 0 chr11 57804911 57805046 -64038810 + B1_Mur1 SINE Alu 1 141 -8 9 1026 241 286 59 12 chr11 57805064 57805149 -64038707 + ID_B1 SINE B4 134 222 -2 9 1026 186 315 82 30 chr11 57805372 57805506 -64038350 + L3 LINE CR1 2066 2206 -2283 9 1026 656 197 87 7 chr11 57805807 57805945 -64037911 + B1F SINE Alu 1 149 0 9 1026 337 123 31 0 chr11 57806087 57806152 -64037704 + GA-rich Low_complexity Low_complexity 3 69 0 9 1026 208 77 51 0 chr11 57806161 57806200 -64037656 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 1026 1273 41 0 0 chr11 57806528 57806675 -64037181 - B1_Mus1 SINE Alu 0 148 2 9 1026 236 292 157 60 chr11 57806678 57806959 -64036897 - ORR1D1 LTR MaLR -43 331 24 9 1026 297 0 0 0 chr11 57806997 57807030 -64036826 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1026 1134 211 58 47 chr11 57807046 57807320 -64036536 - B4A SINE B4 -8 284 8 9 1026 1087 84 0 71 chr11 57807448 57807499 -64036357 - B1_Mus1 SINE Alu -5 143 103 9 1026 1577 48 5 0 chr11 57807499 57807688 -64036168 - B2_Mm1t SINE B2 -2 191 2 9 1026 1087 84 0 71 chr11 57807688 57807790 -64036066 - B1_Mus1 SINE Alu -46 102 1 9 1026 658 98 22 0 chr11 57807833 57807925 -64035931 + B3A SINE B2 1 94 -104 9 1026 241 292 15 84 chr11 57807925 57807964 -64035892 + BC1_Mm scRNA scRNA 1 122 -30 9 1026 490 216 10 0 chr11 57807982 57808079 -64035777 - RSINE1 SINE B4 -23 142 45 9 1026 809 151 47 16 chr11 57808108 57808236 -64035620 - B1_Mur2 SINE Alu 0 149 18 9 1026 405 0 0 0 chr11 57808570 57808615 -64035241 + (TTG)n Simple_repeat Simple_repeat 3 47 0 9 1026 703 186 8 0 chr11 57808641 57808759 -64035097 + B1_Mus2 SINE Alu 16 134 -13 9 1026 624 203 14 36 chr11 57808786 57808924 -64034932 - B1_Mur3 SINE Alu -2 147 13 9 1026 570 29 0 0 chr11 57808962 57809030 -64034826 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 9 1026 552 235 25 0 chr11 57809034 57809153 -64034703 - ID_B1 SINE B4 -54 170 49 9 1026 1085 219 5 18 chr11 57809154 57809373 -64034483 - B3 SINE B2 0 216 1 9 1026 369 239 52 84 chr11 57809648 57809669 -64034187 + ID_B1 SINE B4 71 215 -4 9 1026 620 221 23 16 chr11 57809669 57809798 -64034058 + B1_Mur2 SINE Alu 11 140 -9 9 1026 504 300 0 35 chr11 57809983 57810128 -64033728 - RSINE1 SINE B4 -24 141 2 9 1026 414 0 0 0 chr11 57810206 57810252 -64033604 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1026 185 365 78 35 chr11 57810256 57810398 -64033458 - MIRc SINE MIR -40 228 81 9 1026 227 289 36 102 chr11 57810595 57810761 -64033095 - MIR SINE MIR -112 156 2 9 1026 1052 68 7 40 chr11 57810872 57811024 -64032832 + B1_Mus2 SINE Alu 1 147 0 9 1026 182 365 16 0 chr11 57811062 57811125 -64032731 + MIR3 SINE MIR 144 207 -1 9 1026 496 202 240 0 chr11 57811148 57811252 -64032604 + B1_Mur1 SINE Alu 10 138 -11 9 1026 237 316 38 164 chr11 57811935 57811961 -64031895 - B1_Mur3 SINE Alu -8 141 3 9 1026 466 269 45 23 chr11 57811961 57812094 -64031762 - ID_B1 SINE B4 -5 219 84 9 1026 477 207 0 0 chr11 57812159 57812246 -64031610 + PB1D7 SINE Alu 34 120 0 9 1026 324 185 21 21 chr11 57812296 57812390 -64031466 + GA-rich Low_complexity Low_complexity 2 95 0 9 1026 313 330 67 8 chr11 57812810 57812929 -64030927 + RSINE1 SINE B4 36 161 -4 9 1026 351 0 0 0 chr11 57812968 57813007 -64030849 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1026 340 132 226 16 chr11 57813126 57813210 -64030646 + B1_Mur4 SINE Alu 40 138 -12 9 1026 1076 67 13 0 chr11 57813210 57813359 -64030497 + (GAAAA)n Simple_repeat Simple_repeat 5 155 0 9 1026 1287 95 11 0 chr11 57813360 57813539 -64030317 + B2_Mm1t SINE B2 13 193 0 9 1026 231 114 0 0 chr11 57813540 57813575 -64030281 + (GAGAA)n Simple_repeat Simple_repeat 4 38 0 9 1026 1191 56 0 14 chr11 57813577 57813723 -64030133 + B1_Mus1 SINE Alu 5 148 0 9 1026 773 247 25 46 chr11 57813774 57813977 -64029879 + B3 SINE B2 2 183 -10 9 1026 1095 56 35 0 chr11 57814290 57814432 -64029424 - B1_Mus2 SINE Alu 0 147 1 9 1026 207 0 0 0 chr11 57814944 57814967 -64028889 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1026 510 290 64 14 chr11 57814972 57815112 -64028744 + RSINE1 SINE B4 3 149 -16 9 1026 576 0 0 0 chr11 57815115 57815179 -64028677 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 1026 1372 77 33 0 chr11 57815196 57815379 -64028477 - B2_Mm2 SINE B2 -5 190 2 9 1026 1265 43 12 0 chr11 57815402 57815565 -64028291 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 9 1026 1027 81 0 56 chr11 57815565 57815709 -64028147 - B1_Mus1 SINE Alu -12 136 1 9 1026 546 57 0 0 chr11 57815755 57815825 -64028031 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 1026 583 269 0 46 chr11 57815832 57815984 -64027872 - RSINE1 SINE B4 -20 145 1 9 1026 706 124 40 24 chr11 57816024 57816148 -64027708 - B1_Mur4 SINE Alu -22 128 3 9 1026 293 291 145 15 chr11 57816156 57816456 -64027400 - L1M2 LINE L1 -469 5822 5487 9 1026 533 295 22 111 chr11 57816822 57817047 -64026809 + ID_B1 SINE B4 6 210 -14 9 1026 345 244 0 71 chr11 57817587 57817664 -64026192 + PB1D10 SINE Alu 2 73 -44 9 1026 700 269 68 31 chr11 57817664 57817856 -64026000 + B3 SINE B2 1 199 -17 9 1026 244 263 83 106 chr11 57817862 57817903 -64025953 + MT2B2 LTR ERVL 233 287 -297 9 1026 950 113 15 0 chr11 57817885 57818018 -64025838 + B1_Mus1 SINE Alu 14 148 0 1 1026 313 231 108 0 chr11 57818321 57818386 -64025470 - L1MD LINE L1 -3002 3144 3073 1 1026 389 312 0 0 chr11 57818436 57818529 -64025327 - ID_B1 SINE B4 -53 171 79 1 1026 417 219 0 24 chr11 57818635 57818719 -64025137 + ID2 SINE ID 2 83 0 1 1026 568 227 114 0 chr11 57818950 57819082 -64024774 - B1F1 SINE Alu -2 147 1 1 1026 1247 27 0 20 chr11 57819102 57819252 -64024604 - B1_Mus2 SINE Alu 0 147 1 1 1026 288 0 0 0 chr11 57819276 57819308 -64024548 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1026 877 128 19 1 chr11 57819318 57819463 -64024393 - B2_Mm2 SINE B2 -57 159 2 1 1026 1011 212 61 0 chr11 57819489 57819687 -64024169 - B3 SINE B2 -5 211 2 1 1026 225 108 0 0 chr11 57819687 57819724 -64024132 + (ATG)n Simple_repeat Simple_repeat 1 37 0 1 1026 783 174 29 0 chr11 57819725 57819863 -64023993 - B1_Mus2 SINE Alu -5 142 1 1 1026 432 295 33 27 chr11 57819878 57820028 -64023828 + MIRc SINE MIR 34 184 -84 1 1026 812 122 81 0 chr11 57820291 57820414 -64023442 + B1_Mur4 SINE Alu 13 145 -5 1 1026 672 131 76 16 chr11 57820533 57820671 -64023185 + B1_Mur4 SINE Alu 1 148 -2 1 1026 328 281 28 159 chr11 57821109 57821291 -64022565 + B4A SINE B4 51 208 -84 1 1026 525 213 0 106 chr11 57821168 57821306 -64022550 + B1_Mur3 SINE Alu 8 124 -23 1 1026 357 24 0 0 chr11 57821319 57821361 -64022495 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 1026 213 318 30 129 chr11 57821436 57821638 -64022218 + L2b LINE L2 3204 3385 -2 1 1026 232 350 20 78 chr11 57821635 57821819 -64022037 - MIR3 SINE MIR -28 180 12 1 1026 237 237 52 23 chr11 57822336 57822509 -64021347 + (CCGCG)n Simple_repeat Simple_repeat 1 178 0 1 1026 205 243 17 35 chr11 57822577 57822692 -64021164 + (CCGCG)n Simple_repeat Simple_repeat 4 116 0 1 1026 212 128 43 0 chr11 57824377 57824424 -64019432 + T-rich Low_complexity Low_complexity 5 53 0 1 1026 270 313 81 35 chr11 57824960 57825046 -64018810 - ID_B1 SINE B4 -14 210 121 1 1026 950 75 104 0 chr11 57825228 57825362 -64018494 - B1_Mus1 SINE Alu 0 148 1 1 1026 218 341 23 0 chr11 57825540 57825628 -64018228 + MIRc SINE MIR 117 206 -62 1 1026 860 139 39 93 chr11 57825634 57825713 -64018143 - URR1B DNA MER1_type -6 219 154 1 1026 1067 79 50 0 chr11 57825713 57825853 -64018003 - B1_Mus1 SINE Alu 0 148 2 1 1026 860 139 39 93 chr11 57825853 57825955 -64017901 - URR1B DNA MER1_type -72 153 48 1 1026 245 351 0 0 chr11 57826128 57826205 -64017651 + PB1D7 SINE Alu 1 77 -43 1 1026 1199 71 92 17 chr11 57826305 57826478 -64017378 + B2_Mm2 SINE B2 1 186 -9 1 1026 279 0 0 0 chr11 57826591 57826622 -64017234 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1 1026 752 175 43 21 chr11 57826623 57826763 -64017093 - B1_Mus1 SINE Alu -5 143 1 1 1026 435 242 11 21 chr11 57826768 57826861 -64016995 - RSINE1 SINE B4 -48 117 26 1 1026 294 50 0 0 chr11 57826861 57826901 -64016955 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1026 766 127 0 9 chr11 57826963 57827074 -64016782 - B1_Mm SINE Alu -37 110 1 1 1026 434 188 28 122 chr11 57827074 57827113 -64016743 - MT2B LTR ERVL -393 208 156 1 1026 252 158 0 0 chr11 57827123 57827180 -64016676 + T-rich Low_complexity Low_complexity 1 57 0 1 1026 825 46 0 9 chr11 57827181 57827290 -64016566 - B1_Mm SINE Alu 0 147 40 1 1026 609 216 49 28 chr11 57827295 57827438 -64016418 - B1_Mus1 SINE Alu 0 148 3 1 1026 674 236 2 69 chr11 57827557 57827756 -64016100 - B3 SINE B2 -7 186 12 1 1026 286 345 44 44 chr11 57828021 57828203 -64015653 + MIRb SINE MIR 67 248 -20 1 1026 466 233 107 41 chr11 57828240 57828361 -64015495 + RSINE1 SINE B4 2 130 -35 1 1026 244 260 138 46 chr11 57829025 57829134 -64014722 + PB1D7 SINE Alu 1 119 -1 1 1026 1418 84 26 0 chr11 57829329 57829519 -64014337 - B2_Mm2 SINE B2 0 195 1 1 1026 1067 45 0 57 chr11 57832426 57832567 -64011289 + B1_Mm SINE Alu 3 135 -12 1 1026 351 0 0 0 chr11 57832569 57832608 -64011248 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1026 405 0 0 0 chr11 57832648 57832693 -64011163 + (GGA)n Simple_repeat Simple_repeat 1 45 0 1 1026 367 203 194 45 chr11 57832801 57832935 -64010921 - RSINE1 SINE B4 0 165 12 1 1026 354 324 27 9 chr11 57833376 57833488 -64010368 + B1_Mur2 SINE Alu 7 120 -29 1 1026 207 0 0 0 chr11 57833497 57833520 -64010336 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1026 381 255 47 47 chr11 57833521 57833628 -64010228 + B1_Mur1 SINE Alu 38 144 -5 1 1026 216 0 0 0 chr11 57833711 57833735 -64010121 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1026 865 103 0 0 chr11 57833735 57833852 -64010004 - B1_Mus1 SINE Alu -31 117 1 1 1026 455 266 52 45 chr11 57833852 57833878 -64009978 - B4 SINE B4 -202 90 64 1 1026 524 179 165 79 chr11 57833923 57834050 -64009806 + B1_Mur2 SINE Alu 6 143 -6 1 1026 231 266 107 53 chr11 57834192 57834323 -64009533 - MLT1G3 LTR MaLR -241 354 217 1 1026 590 270 34 17 chr11 57836147 57836324 -64007532 + B3A SINE B2 1 180 -18 1 1026 1069 80 132 18 chr11 57836337 57836503 -64007353 - B2_Mm2 SINE B2 -8 187 3 1 1026 684 93 0 0 chr11 57836530 57836627 -64007229 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 1 1026 1123 37 44 0 chr11 57836629 57836764 -64007092 - B1_Mm SINE Alu -6 141 1 1 1026 1438 70 37 5 chr11 57836765 57836953 -64006903 - B2_Mm2 SINE B2 0 195 2 1 1026 725 201 21 0 chr11 57836968 57837112 -64006744 - B1_Mus1 SINE Alu 0 148 2 1 1026 23 0 0 0 chr11 57837125 57837148 -64006708 + AT_rich Low_complexity Low_complexity 1 23 0 1 1026 2304 77 10 0 chr11 57837150 57837450 -64006406 - L1_Mus1 LINE L1 0 6567 6265 1 1026 405 216 127 59 chr11 57837599 57837717 -64006139 - ID_B1 SINE B4 -12 212 87 1 1026 297 326 32 11 chr11 57837755 57837848 -64006008 - B1F1 SINE Alu -9 140 46 1 1026 22 0 0 0 chr11 57838660 57838682 -64005174 + AT_rich Low_complexity Low_complexity 1 22 0 1 1026 290 279 0 29 chr11 57838733 57838803 -64005053 - B3 SINE B2 -148 68 1 1 1026 302 183 306 0 chr11 57838877 57838966 -64004890 - B1_Mus1 SINE Alu -28 121 2 1 1026 310 196 0 0 chr11 57839906 57839957 -64003899 + ID SINE ID 2 52 -172 1 1026 228 67 0 0 chr11 57841052 57841082 -64002774 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1026 1259 89 0 0 chr11 57841082 57841242 -64002614 - B2_Mm1t SINE B2 -32 161 2 1 1026 768 261 185 62 chr11 57841242 57841625 -64002231 - RMER4B LTR ERVK -48 563 59 1 1026 1208 43 0 0 chr11 57841627 57841765 -64002091 + B1_Mm SINE Alu 2 139 -8 1 1026 1129 59 0 0 chr11 57842132 57842267 -64001589 - B1_Mus1 SINE Alu -12 136 2 1 1026 453 62 125 0 chr11 57842373 57842437 -64001419 - B1_Mus1 SINE Alu -76 72 1 1 1026 940 117 15 0 chr11 57842437 57842573 -64001283 - B2_Mm2 SINE B2 -22 173 36 1 1026 443 176 96 19 chr11 57843094 57843198 -64000658 - PB1D9 SINE Alu 0 120 9 1 1026 591 219 35 9 chr11 57843602 57843717 -64000139 - PB1D9 SINE Alu -1 119 2 1 1026 394 314 82 12 chr11 57844030 57844201 -63999655 + MER53 DNA hAT 8 190 -3 1 1026 1106 72 0 0 chr11 57844499 57844637 -63999219 + B1_Mus2 SINE Alu 2 139 -8 1 1026 609 209 66 15 chr11 57845533 57845669 -63998187 - B1_Mur4 SINE Alu -6 144 2 1 1026 363 48 95 0 chr11 57845890 57845953 -63997903 + L1Md_F3 LINE L1 6516 6584 0 1 1026 401 204 124 11 chr11 57846028 57846122 -63997734 + PB1D9 SINE Alu 10 107 -13 1 1026 238 298 95 105 chr11 57846169 57846274 -63997582 + PB1D10 SINE Alu 11 114 -3 1 1026 256 263 213 33 chr11 57846689 57846811 -63997045 + MIR SINE MIR 41 184 -78 1 1026 205 219 27 27 chr11 57849790 57849865 -63993991 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 1 1026 831 163 21 7 chr11 57849868 57850010 -63993846 - B1_Mur3 SINE Alu -1 148 5 1 1026 920 210 48 29 chr11 57850026 57850232 -63993624 - B3 SINE B2 -6 210 1 1 1026 292 278 125 0 chr11 57850247 57850319 -63993537 - RSINE1 SINE B4 -17 148 68 1 1026 441 169 11 78 chr11 57850317 57850407 -63993449 + PB1D9 SINE Alu 11 94 -26 1 1026 223 135 19 19 chr11 57850414 57850467 -63993389 + A-rich Low_complexity Low_complexity 4 56 0 1 1026 1295 126 11 0 chr11 57850807 57850998 -63992858 - B2_Mm1t SINE B2 0 193 1 1 1026 357 269 45 18 chr11 57851415 57851525 -63992331 + PB1D7 SINE Alu 1 113 -7 1 1026 324 0 0 0 chr11 57851559 57851595 -63992261 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 1 1026 267 250 18 0 chr11 57851614 57851670 -63992186 - RSINE1 SINE B4 -24 141 85 1 1026 687 210 16 0 chr11 57852411 57852535 -63991321 - B1_Mur3 SINE Alu -23 126 1 1 1026 184 250 43 86 chr11 57853072 57853142 -63990714 + L4 LINE RTE 611 677 -1352 1 1026 410 277 21 91 chr11 57853287 57853430 -63990426 + B1F2 SINE Alu 11 143 -6 1 1026 328 294 10 52 chr11 57854355 57854452 -63989404 + PB1 SINE Alu 10 102 -25 1 1026 216 276 151 25 chr11 57856746 57856865 -63986991 - MIRb SINE MIR -113 155 15 1 1026 1326 146 27 18 chr11 57857069 57857292 -63986564 - URR1B DNA MER1_type 0 225 1 1 1026 1161 98 0 0 chr11 57857917 57858070 -63985786 + B2_Mm2 SINE B2 2 154 -41 1 1026 594 0 0 0 chr11 57858071 57858137 -63985719 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 1 1026 664 243 7 26 chr11 57858878 57859030 -63984826 - B1_Mur3 SINE Alu 0 149 1 1 1026 247 146 352 22 chr11 57859334 57859425 -63984431 + Lx2B LINE L1 6875 6995 -5 1 1026 396 0 0 0 chr11 57859492 57859536 -63984320 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1026 528 191 126 84 chr11 57859539 57859682 -63984174 - B1_Mur4 SINE Alu 0 150 2 1 1026 659 250 22 89 chr11 57859962 57860031 -63983825 - B3 SINE B2 -29 187 118 1 1026 1181 86 62 22 chr11 57860031 57860210 -63983646 + B2_Mm1t SINE B2 2 187 -6 1 1026 659 250 22 89 chr11 57860210 57860320 -63983536 - B3 SINE B2 -99 117 20 1 1026 664 261 0 7 chr11 57860564 57860707 -63983149 + B1_Mus2 SINE Alu 1 142 -5 1 1026 222 195 0 24 chr11 57861149 57861191 -63982665 + polypyrimidine Low_complexity Low_complexity 2 42 0 1 1026 264 258 30 15 chr11 57864937 57865004 -63978852 + ID4 SINE ID 3 70 -13 1 1026 468 206 39 26 chr11 57865365 57865488 -63978368 - B1_Mur1 SINE Alu 0 120 1 1 1026 1358 95 16 5 chr11 57866474 57866665 -63977191 + B2_Mm2 SINE B2 1 193 -2 1 1026 848 99 254 0 chr11 57866667 57866809 -63977047 + B2_Mm1t SINE B2 2 179 -14 1 1026 363 124 13 18 chr11 57866859 57866924 -63976932 + B2_Mm2 SINE B2 46 115 -83 1 1026 207 184 26 0 chr11 57867208 57867246 -63976610 + C-rich Low_complexity Low_complexity 2 40 0 1 1026 893 81 138 0 chr11 57867249 57867372 -63976484 - B1_Mus1 SINE Alu -6 142 3 1 1026 1069 197 257 33 chr11 57867734 57868038 -63975818 - ORR1D1 LTR MaLR 0 374 3 1 1026 256 310 11 75 chr11 57868232 57868326 -63975530 - B4A SINE B4 -69 223 136 1 1026 934 277 0 19 chr11 57868405 57868611 -63975245 - B3 SINE B2 -8 208 7 1 1026 697 146 378 0 chr11 57868709 57868873 -63974983 + URR1A DNA MER1_type 1 226 0 1 1026 642 237 0 22 chr11 57869354 57869492 -63974364 - B1_Mur4 SINE Alu -13 137 3 1 1026 519 146 125 10 chr11 57869531 57869635 -63974221 - B1_Mus2 SINE Alu -11 136 21 1 1026 1206 55 0 14 chr11 57869733 57869881 -63973975 - B1_Mus2 SINE Alu -1 146 1 1 1026 674 118 81 32 chr11 57869915 57870038 -63973818 - B2_Mm1t SINE B2 -3 190 62 1 1026 693 114 47 47 chr11 57869984 57870113 -63973743 + B2_Mm1a SINE B2 62 190 -3 1 1026 261 338 25 0 chr11 57871297 57871377 -63972479 + ID4_ SINE ID 1 82 -1 1 1026 312 27 0 0 chr11 57872516 57872553 -63971303 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1026 360 182 0 0 chr11 57872937 57873025 -63970831 + A-rich Low_complexity Low_complexity 1 88 0 1 1026 212 227 0 0 chr11 57873437 57873481 -63970375 + (CCCCG)n Simple_repeat Simple_repeat 2 45 0 1 1026 342 0 0 0 chr11 57874570 57874608 -63969248 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1026 1425 75 37 0 chr11 57877056 57877243 -63966613 - B2_Mm2 SINE B2 0 195 2 1 1026 1225 54 0 0 chr11 57877870 57878017 -63965839 - B1_Mus2 SINE Alu 0 147 1 1 1026 283 302 34 23 chr11 57878031 57878119 -63965737 - ID_B1 SINE B4 -115 109 21 1 1026 299 303 119 32 chr11 57878197 57878323 -63965533 - B4A SINE B4 -86 206 70 1 1026 354 243 135 0 chr11 57878324 57878435 -63965421 - B1_Mur1 SINE Alu -19 130 5 1 1026 380 283 69 122 chr11 57878648 57878703 -63965153 + ID_B1 SINE B4 50 192 -100 1 1026 679 139 98 0 chr11 57878703 57878825 -63965031 + B1_Mur4 SINE Alu 7 140 -10 1 1026 380 283 69 122 chr11 57878825 57878837 -63965019 + ID_B1 SINE B4 193 228 -64 1 1026 200 250 52 35 chr11 57881089 57881147 -63962709 - L2 LINE L2 -1517 1902 1844 1 1026 644 154 34 8 chr11 57881169 57881287 -63962569 + B2_Mm2 SINE B2 75 195 0 1 1026 209 163 47 0 chr11 57881287 57881330 -63962526 + GA-rich Low_complexity Low_complexity 2 46 0 1 1026 284 301 39 78 chr11 57882538 57882628 -63961228 + ID_B1 SINE B4 13 209 -15 1 1026 699 73 26 43 chr11 57882628 57882743 -63961113 + B1_Mur4 SINE Alu 23 135 -15 1 1026 321 276 48 48 chr11 57883017 57883067 -63960789 - HAL1-3A_ME LINE L1 -780 2078 2028 1 1026 1334 71 8 8 chr11 57883067 57883309 -63960547 + (TATG)n Simple_repeat Simple_repeat 1 242 0 1 1026 321 276 48 48 chr11 57883309 57883360 -63960496 - HAL1-3A_ME LINE L1 -831 2027 1977 1 1026 588 203 98 92 chr11 57883369 57883532 -63960324 - RSINE1 SINE B4 0 165 2 1 1026 842 244 63 0 chr11 57883532 57883737 -63960119 - ID_B1 SINE B4 -6 218 1 1 1026 246 132 0 0 chr11 57884134 57884187 -63959669 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1026 1145 88 0 20 chr11 57884187 57884338 -63959518 - B1_Mus1 SINE Alu 0 148 1 1 1026 738 0 0 0 chr11 57884365 57884447 -63959409 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1026 497 156 30 30 chr11 57884448 57884547 -63959309 - B1_Mur2 SINE Alu -42 107 9 1 1026 345 208 9 103 chr11 57884455 57884562 -63959294 - ID_B1 SINE B4 -48 176 80 1 1026 578 216 47 23 chr11 57884559 57884687 -63959169 - B1F SINE Alu 0 149 19 1 1026 290 309 10 40 chr11 57884829 57884930 -63958926 + ID_B1 SINE B4 126 223 -1 1 1026 1223 61 0 0 chr11 57884934 57885081 -63958775 + B1_Mm SINE Alu 1 147 0 1 1026 441 0 0 0 chr11 57885117 57885166 -63958690 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1026 908 194 55 30 chr11 57885191 57885393 -63958463 + B3 SINE B2 2 208 -8 1 1026 466 176 42 50 chr11 57885559 57885679 -63958177 + PB1D9 SINE Alu 2 120 0 1 1026 677 228 8 0 chr11 57885739 57885862 -63957994 + RSINE1 SINE B4 23 146 -19 1 1026 1140 76 7 0 chr11 57886106 57886250 -63957606 + B1_Mus2 SINE Alu 3 147 0 1 1026 482 171 17 0 chr11 57886692 57886784 -63957072 + B1_Mur2 SINE Alu 50 148 -1 1 1026 356 211 26 0 chr11 57887098 57887174 -63956682 + B3 SINE B2 1 78 -138 1 1026 604 261 28 28 chr11 57887573 57887715 -63956141 + B4A SINE B4 89 230 -62 1 1026 1685 21 0 5 chr11 57888141 57888335 -63955521 - B2_Mm1a SINE B2 0 193 1 1 1026 1068 117 0 0 chr11 57888386 57888549 -63955307 + (TTTC)n Simple_repeat Simple_repeat 4 166 0 1 1026 1376 52 17 17 chr11 57888551 57888728 -63955128 - B2_Mm2 SINE B2 -15 180 4 1 1026 904 35 9 0 chr11 57889212 57889326 -63954530 + B1_Mm SINE Alu 33 147 0 1 1026 277 268 98 134 chr11 57889350 57889414 -63954442 - PB1 SINE Alu -13 136 29 1 1026 330 125 0 0 chr11 57889414 57889462 -63954394 - ID_B1 SINE B4 -67 157 110 1 1026 372 200 16 34 chr11 57890231 57890346 -63953510 + B1F SINE Alu 10 141 -8 1 1026 1473 79 11 0 chr11 57890347 57890537 -63953319 + B2_Mm1t SINE B2 2 193 0 1 1026 1180 68 0 0 chr11 57890585 57890731 -63953125 - B1_Mus2 SINE Alu 0 147 2 1 1026 1093 224 9 0 chr11 57891268 57891482 -63952374 - B3 SINE B2 0 216 1 1 1026 249 218 165 13 chr11 57891522 57891601 -63952255 - B4A SINE B4 0 292 202 1 1026 396 309 27 54 chr11 57891619 57891766 -63952090 - B4A SINE B4 -148 144 2 1 1026 37 52 0 0 chr11 57891849 57891907 -63951949 + AT_rich Low_complexity Low_complexity 1 58 0 1 1026 239 81 101 0 chr11 57891912 57892011 -63951845 + (TA)n Simple_repeat Simple_repeat 1 109 0 1 1026 33 56 0 0 chr11 57892014 57892068 -63951788 + AT_rich Low_complexity Low_complexity 1 54 0 1 1026 529 100 0 0 chr11 57892068 57892138 -63951718 - B2_Mm2 SINE B2 -125 70 1 1 1026 238 250 188 0 chr11 57892398 57892462 -63951394 + B1F SINE Alu 1 76 -73 1 1026 321 159 0 0 chr11 57892584 57892647 -63951209 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 1026 1311 85 11 0 chr11 57892748 57892925 -63950931 + B2_Mm1a SINE B2 1 179 -14 1 1026 425 61 0 20 chr11 57892953 57893065 -63950791 + B2_Mm2 SINE B2 47 192 -3 1 1026 339 302 52 64 chr11 57893061 57893234 -63950622 + B3A SINE B2 27 197 -1 1 1026 252 0 0 0 chr11 57893411 57893439 -63950417 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1026 291 211 85 92 chr11 57893439 57893580 -63950276 - ID_B1 SINE B4 0 224 85 1 1026 1315 177 179 55 chr11 57893841 57893882 -63949974 - ORR1C2 LTR MaLR -12 372 333 1 1026 243 0 0 0 chr11 57893882 57893909 -63949947 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1026 1070 96 0 0 chr11 57893909 57894045 -63949811 - B1_Mus2 SINE Alu -9 138 3 1 1026 1315 177 179 55 chr11 57894045 57894331 -63949525 - ORR1C2 LTR MaLR -52 332 4 1 1026 658 231 164 31 chr11 57894338 57894559 -63949297 + Lx9 LINE L1 5611 5891 -1753 1 1026 223 225 0 0 chr11 57894846 57894886 -63948970 + B1_Mus1 SINE Alu 22 61 -87 1 1026 448 248 48 57 chr11 57895090 57895214 -63948642 + B4A SINE B4 1 123 -169 1 1026 418 283 37 94 chr11 57895214 57895281 -63948575 + B3A SINE B2 1 180 -18 1 1026 1226 41 7 0 chr11 57895597 57895743 -63948113 + B1_Mus2 SINE Alu 1 147 0 1 1026 24 0 0 0 chr11 57895981 57896005 -63947851 + AT_rich Low_complexity Low_complexity 1 24 0 1 1026 395 249 148 67 chr11 57896117 57896414 -63947442 + L1MA6 LINE L1 5737 6057 -243 1 1026 1496 37 15 64 chr11 57896949 57897151 -63946705 + B2_Mm1a SINE B2 1 192 -1 1 1026 557 234 0 9 chr11 57897189 57897301 -63946555 - PB1D9 SINE Alu 0 120 10 1 1026 331 289 0 32 chr11 57897226 57897319 -63946537 - B4 SINE B4 -123 169 80 1 1026 28 38 0 19 chr11 57897319 57897352 -63946504 + AT_rich Low_complexity Low_complexity 1 33 0 1 1026 1297 27 0 0 chr11 57897352 57897499 -63946357 + B1_Mm SINE Alu 1 147 0 1 1026 28 38 0 19 chr11 57897499 57897518 -63946338 + AT_rich Low_complexity Low_complexity 1 19 0 1 1026 1394 73 17 0 chr11 57897518 57897696 -63946160 - B2_Mm2 SINE B2 -14 181 1 1 1026 1166 75 0 13 chr11 57897717 57897866 -63945990 - B1_Mus1 SINE Alu 0 148 2 1 1026 1031 113 0 0 chr11 57897953 57898095 -63945761 + B1_Mus1 SINE Alu 7 148 0 1 1026 511 224 37 0 chr11 57898112 57898219 -63945637 + PB1D9 SINE Alu 2 112 -8 1 1026 645 227 27 54 chr11 57898223 57898409 -63945447 - B3A SINE B2 -17 181 1 1 1026 226 309 95 66 chr11 57898644 57898913 -63944943 + ID_B1 SINE B4 9 292 0 1 1026 815 171 53 30 chr11 57899097 57899266 -63944590 + B2_Mm2 SINE B2 1 173 -22 1 1026 324 48 0 0 chr11 57899268 57899310 -63944546 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1026 184 321 35 47 chr11 57899504 57899589 -63944267 - MIR SINE MIR -86 122 39 1 1026 435 276 135 42 chr11 57899741 57899806 -63944050 + ID_B1 SINE B4 2 105 -187 1 1026 303 267 58 0 chr11 57899806 57899890 -63943966 + PB1D10 SINE Alu 1 91 -29 1 1026 435 276 135 42 chr11 57899890 57899998 -63943858 + ID_B1 SINE B4 106 283 -9 1 1026 1046 70 0 0 chr11 57900033 57900162 -63943694 + B1_Mus2 SINE Alu 2 130 -17 1 1026 1000 39 0 16 chr11 57900369 57900498 -63943358 + B1_Mus1 SINE Alu 22 148 0 1 1026 1652 27 0 0 chr11 57900511 57900697 -63943159 + B2_Mm1a SINE B2 2 187 -6 1 1026 254 94 0 54 chr11 57900712 57900768 -63943088 + (A)n Simple_repeat Simple_repeat 1 53 0 1 1026 1006 130 14 0 chr11 57900957 57901103 -63942753 + B1_Mus1 SINE Alu 1 148 0 1 1026 264 59 0 0 chr11 57901420 57901454 -63942402 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 1 1026 1324 108 0 10 chr11 57901708 57901904 -63941952 - B2_Mm2 SINE B2 -1 194 1 1 1026 1305 73 0 0 chr11 57901905 57902111 -63941745 + (TTTTC)n Simple_repeat Simple_repeat 1 206 0 1 1026 23 33 0 0 chr11 57902163 57902193 -63941663 + AT_rich Low_complexity Low_complexity 1 30 0 1 1026 263 71 0 176 chr11 57902291 57902342 -63941514 - L1VL2 LINE L1 -6120 215 174 1 1026 271 0 0 49 chr11 57902356 57902397 -63941459 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1026 1085 37 14 22 chr11 57902397 57902535 -63941321 - B1_Mus2 SINE Alu -10 137 1 1 1026 297 273 0 0 chr11 57902608 57902674 -63941182 - RSINE1 SINE B4 -85 80 15 1 1026 180 77 0 0 chr11 57902736 57902762 -63941094 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1026 1065 88 0 14 chr11 57902762 57902901 -63940955 - B1_Mus2 SINE Alu -10 137 1 1 1026 41 0 0 0 chr11 57902908 57902949 -63940907 + AT_rich Low_complexity Low_complexity 1 41 0 1 1026 1395 89 0 10 chr11 57903012 57903204 -63940652 - B2_Mm2 SINE B2 -5 190 1 1 1026 623 243 64 84 chr11 57903208 57903410 -63940446 - B3A SINE B2 0 198 1 1 1026 246 289 170 30 chr11 57903499 57903599 -63940257 - PB1D10 SINE Alu -2 115 2 1 1026 341 304 94 23 chr11 57903668 57903796 -63940060 + B1F SINE Alu 13 149 0 1 1026 286 323 53 23 chr11 57903806 57903939 -63939917 + B1_Mus1 SINE Alu 10 146 -2 1 1026 207 146 42 0 chr11 57903940 57903988 -63939868 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 1 1026 1030 104 8 19 chr11 57904276 57904470 -63939386 + B2_Mm2 SINE B2 2 215 -1 1 1026 430 239 97 0 chr11 57905181 57905294 -63938562 + PB1 SINE Alu 1 124 -3 1 1026 617 232 12 138 chr11 57905316 57905410 -63938446 + ID_B1 SINE B4 9 104 -120 1 1026 1114 55 0 33 chr11 57905410 57905433 -63938423 + B1_Mus1 SINE Alu 2 24 -124 1 1026 564 49 0 0 chr11 57905433 57905515 -63938341 - L1Md_F2 LINE L1 0 6582 6501 1 1026 617 232 12 138 chr11 57905515 57905637 -63938219 + ID_B1 SINE B4 105 218 -6 1 1026 369 0 0 0 chr11 57905641 57905682 -63938174 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 1 1026 189 0 0 0 chr11 57906977 57906998 -63936858 + (TCCCC)n Simple_repeat Simple_repeat 2 22 0 1 1026 22 35 0 0 chr11 57907021 57907050 -63936806 + AT_rich Low_complexity Low_complexity 1 29 0 1 1026 388 211 88 11 chr11 57907058 57907149 -63936707 - B1_Mus2 SINE Alu -11 109 12 1 1026 281 287 20 78 chr11 57907072 57907174 -63936682 - B4A SINE B4 -119 173 78 1 1026 408 111 0 0 chr11 57907179 57907251 -63936605 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1026 685 222 19 25 chr11 57907262 57907419 -63936437 - B3A SINE B2 -42 156 1 1 1026 556 302 0 14 chr11 57907424 57907565 -63936291 - ID_B1 SINE B4 -1 223 85 1 1026 1334 76 32 5 chr11 57907725 57907910 -63935946 - B2_Mm1a SINE B2 -2 191 2 1 1026 535 297 0 0 chr11 57908071 57908189 -63935667 - B1_Mur2 SINE Alu -29 120 3 1 1026 387 83 0 0 chr11 57908201 57908261 -63935595 + (TCTCTG)n Simple_repeat Simple_repeat 6 65 0 1 1026 781 214 16 43 chr11 57908261 57908447 -63935409 - B3A SINE B2 -17 181 1 1 1026 503 279 51 26 chr11 57908456 57908651 -63935205 - ID_B1 SINE B4 -6 218 19 1 1026 1033 99 148 0 chr11 57908688 57908850 -63935006 - B2_Mm2 SINE B2 -5 190 5 1 1026 734 136 136 0 chr11 57908895 57909027 -63934829 + B1_Mur4 SINE Alu 1 150 0 1 1026 306 276 297 0 chr11 57909044 57909189 -63934667 - B3A SINE B2 -10 188 1 1 1026 385 202 105 9 chr11 57909200 57909305 -63934551 - B1F SINE Alu -11 138 24 1 1026 272 234 117 0 chr11 57909382 57909459 -63934397 + PB1D9 SINE Alu 26 111 -9 1 1026 261 250 82 14 chr11 57909711 57909784 -63934072 + ID4_ SINE ID 4 81 -2 1 1026 853 229 16 39 chr11 57910066 57910248 -63933608 - B3 SINE B2 -38 178 1 1 1026 24 67 0 0 chr11 57910261 57910306 -63933550 + AT_rich Low_complexity Low_complexity 1 45 0 1 1026 23 0 0 0 chr11 57911517 57911540 -63932316 + GC_rich Low_complexity Low_complexity 1 23 0 1 1026 1315 105 16 5 chr11 57911688 57911879 -63931977 + B2_Mm2 SINE B2 1 193 -2 1 1026 973 69 0 23 chr11 57911897 57912030 -63931826 + B2_Mm2 SINE B2 1 130 -65 1 1026 368 235 55 73 chr11 57912562 57912672 -63931184 + PB1D7 SINE Alu 1 108 -12 1 1026 608 200 9 0 chr11 57913011 57913116 -63930740 - ID_B1 SINE B4 -2 222 117 1 1026 477 0 0 0 chr11 57913134 57913187 -63930669 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1026 1111 44 0 0 chr11 57913188 57913325 -63930531 - B1_Mus1 SINE Alu -6 142 6 1 1026 422 252 16 83 chr11 57913318 57913439 -63930417 - B1_Mur1 SINE Alu -24 125 13 1 1026 392 269 8 42 chr11 57913642 57913762 -63930094 - PB1D10 SINE Alu 0 117 2 1 1026 277 176 0 50 chr11 57914439 57914499 -63929357 - B1_Mur4 SINE Alu 0 150 94 1 1026 1047 71 7 0 chr11 57914687 57914828 -63929028 + B1_Mur4 SINE Alu 9 150 0 1 1026 332 313 30 20 chr11 57914848 57914949 -63928907 - PB1D7 SINE Alu -8 112 11 1 1026 180 0 0 0 chr11 57914951 57914971 -63928885 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1026 731 139 8 8 chr11 57914971 57915094 -63928762 - B1_Mur3 SINE Alu -13 136 14 1 1026 987 126 71 44 chr11 57915413 57915596 -63928260 - B2_Mm2 SINE B2 -7 188 1 1 1026 1456 137 43 4 chr11 57915679 57915935 -63927921 - RMER10B LTR ERVL -132 266 1 1 1026 298 157 0 24 chr11 57918296 57918381 -63925475 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1026 258 328 0 0 chr11 57918426 57918490 -63925366 + MamRep137 DNA TcMar? 24 87 -357 1 1026 781 204 24 16 chr11 57918613 57918823 -63925033 - B3A SINE B2 -4 212 1 1 1026 183 80 0 0 chr11 57918837 57918862 -63924994 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 1026 561 190 147 0 chr11 57919061 57919177 -63924679 + B1_Mus1 SINE Alu 6 138 -10 1 1026 659 194 7 34 chr11 57919163 57919178 -63924678 + ID_B1 SINE B4 80 224 0 1 1026 1076 45 0 0 chr11 57919178 57919312 -63924544 + B1_Mus2 SINE Alu 14 147 0 1 1026 550 156 78 0 chr11 57919337 57919427 -63924429 - B3 SINE B2 -118 98 2 1 1026 384 185 24 47 chr11 57919460 57919545 -63924311 - PB1D7 SINE Alu -13 107 25 1 1026 1125 68 13 13 chr11 57919972 57920122 -63923734 - B1_Mur4 SINE Alu 0 150 1 1 1026 1078 78 5 25 chr11 57920137 57920342 -63923514 + (TTTC)n Simple_repeat Simple_repeat 1 200 0 1 1026 1331 62 0 6 chr11 57920342 57920521 -63923335 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 1026 214 27 0 51 chr11 57920521 57920535 -63923321 + (TTTC)n Simple_repeat Simple_repeat 2 15 0 1 1026 1001 132 7 7 chr11 57920535 57920688 -63923168 - B2_Mm1a SINE B2 -39 154 2 1 1026 1100 213 14 0 chr11 57921997 57922204 -63921652 - B3 SINE B2 -5 211 2 1 1026 650 270 86 6 chr11 57922276 57922451 -63921405 + B3 SINE B2 2 190 -26 1 1026 1551 47 5 5 chr11 57922475 57922667 -63921189 - B2_Mm2 SINE B2 -2 193 2 1 1026 447 246 83 53 chr11 57922828 57922961 -63920895 - B1F1 SINE Alu -1 148 12 1 1026 451 255 72 7 chr11 57923426 57923564 -63920292 - B1F2 SINE Alu 0 149 3 1 1026 436 274 45 25 chr11 57923564 57923582 -63920274 - ID_B1 SINE B4 0 223 65 1 1026 531 207 144 32 chr11 57923663 57923788 -63920068 - ID_B1 SINE B4 -2 222 84 1 1026 232 302 79 72 chr11 57923782 57923921 -63919935 + Charlie8 DNA MER1_type 49 188 -2240 1 1026 754 178 46 24 chr11 57924406 57924584 -63919272 + B3 SINE B2 3 176 -19 1 1026 221 178 0 100 chr11 57925059 57925109 -63918747 - B1_Mur3 SINE Alu -12 137 93 1 1026 180 0 0 0 chr11 57925112 57925132 -63918724 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1026 915 86 54 61 chr11 57925132 57925280 -63918576 - B1_Mus2 SINE Alu 0 147 1 1 1026 1456 67 10 15 chr11 57925283 57925479 -63918377 - B2_Mm2 SINE B2 0 195 1 1 1026 192 40 0 0 chr11 57925497 57925522 -63918334 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1 1026 1141 76 14 0 chr11 57925522 57925666 -63918190 - B1_Mus2 SINE Alu 0 147 2 1 1026 567 215 208 6 chr11 57925674 57925847 -63918009 - B3 SINE B2 -7 209 2 1 1026 827 172 45 70 chr11 57925878 57926078 -63917778 + B2_Mm2 SINE B2 1 195 0 1 1026 787 208 63 6 chr11 57926095 57926269 -63917587 + B2_Mm2 SINE B2 12 195 0 1 1026 344 232 122 0 chr11 57926288 57926370 -63917486 + B3 SINE B2 14 105 -111 1 1026 483 274 13 27 chr11 57927052 57927202 -63916654 - B3A SINE B2 0 198 51 1 1026 1670 115 30 137 chr11 57927931 57927998 -63915858 - Lx LINE L1 -5 6649 6599 1 1026 1191 41 7 0 chr11 57927998 57928143 -63915713 - B1_Mus2 SINE Alu 0 147 2 1 1026 1670 115 30 137 chr11 57928143 57928447 -63915409 - Lx LINE L1 -56 6598 6318 1 1026 405 266 135 16 chr11 57928478 57928604 -63915252 + RSINE1 SINE B4 6 146 -19 1 1026 1185 85 84 6 chr11 57929089 57929267 -63914589 - B2_Mm2 SINE B2 -2 193 2 1 1026 680 176 0 0 chr11 57929346 57929454 -63914402 + B1_Mus1 SINE Alu 1 108 -40 1 1026 201 167 0 0 chr11 57929499 57929535 -63914321 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1026 483 221 48 0 chr11 57929535 57929639 -63914217 - PB1D9 SINE Alu -3 117 9 1 1026 1055 109 0 20 chr11 57929675 57929825 -63914031 - B1_Mus2 SINE Alu 0 147 1 1 1026 483 204 9 88 chr11 57929904 57930017 -63913839 - PB1D9 SINE Alu -2 118 15 1 1026 299 276 40 0 chr11 57930018 57930094 -63913762 - PB1D7 SINE Alu -41 79 1 1 1026 227 294 105 32 chr11 57930285 57930380 -63913476 - ORR1E LTR MaLR -249 110 9 1 1026 224 291 35 11 chr11 57930530 57930560 -63913296 - B4A SINE B4 -120 172 86 1 1026 292 146 55 0 chr11 57930560 57930615 -63913241 - B1F1 SINE Alu -91 58 1 1 1026 22 56 0 0 chr11 57932042 57932078 -63911778 + AT_rich Low_complexity Low_complexity 1 36 0 1 1026 308 219 82 0 chr11 57933561 57933634 -63910222 - B3 SINE B2 -137 79 1 1 1026 253 271 62 40 chr11 57933649 57933740 -63910116 - PB1D7 SINE Alu -8 112 17 1 1027 485 165 35 12 chr11 57935613 57935699 -63908157 - B1_Mur3 SINE Alu -61 88 1 1 1027 691 279 43 33 chr11 57935968 57936089 -63907767 + B3 SINE B2 1 124 -92 1 1027 1244 48 0 0 chr11 57936089 57936236 -63907620 - B1_Mus1 SINE Alu 0 148 2 1 1027 691 279 43 33 chr11 57936236 57936325 -63907531 + B3 SINE B2 125 213 -3 1 1027 434 258 175 16 chr11 57936360 57936486 -63907370 - RSINE1 SINE B4 -12 153 8 1 1027 304 295 61 31 chr11 57936624 57936722 -63907134 - PB1D9 SINE Alu -16 104 4 1 1027 750 256 27 45 chr11 57937233 57937454 -63906402 - ID_B1 SINE B4 -5 219 3 1 1027 330 247 11 53 chr11 57937923 57938017 -63905839 - ID_B1 SINE B4 -33 191 102 1 1027 275 245 38 0 chr11 57938113 57938166 -63905690 - B3A SINE B2 -122 76 22 1 1027 461 228 22 0 chr11 57939291 57939383 -63904473 - ID_B1 SINE B4 -10 214 121 1 1027 204 40 0 0 chr11 57939450 57939475 -63904381 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1027 1055 74 0 7 chr11 57939494 57939630 -63904226 - B1_Mus2 SINE Alu -12 135 1 1 1027 270 56 0 0 chr11 57939890 57939926 -63903930 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1027 397 254 183 17 chr11 57940478 57940507 -63903349 + B1F SINE Alu 10 147 0 1 1027 486 191 0 0 chr11 57940507 57940596 -63903260 + ID_B1 SINE B4 136 224 0 1 1027 544 280 43 97 chr11 57940659 57940717 -63903139 - B4A SINE B4 -21 271 230 1 1027 588 169 16 71 chr11 57940717 57940844 -63903012 - PB1D9 SINE Alu 0 120 1 1 1027 544 280 43 97 chr11 57940844 57940971 -63902885 - B4A SINE B4 -63 229 96 1 1027 240 283 202 0 chr11 57940938 57941037 -63902819 - B3A SINE B2 -78 120 2 1 1027 824 34 244 8 chr11 57941487 57941606 -63902250 - B1_Mus1 SINE Alu 0 148 2 1 1027 752 230 22 0 chr11 57941806 57941945 -63901911 - B3 SINE B2 -23 193 52 1 1027 377 312 39 15 chr11 57942853 57942983 -63900873 + B1F SINE Alu 6 138 -11 1 1027 267 228 219 38 chr11 57944584 57944689 -63899167 - RSINE1 SINE B4 -33 132 9 1 1027 521 287 56 28 chr11 57944705 57944884 -63898972 - B4A SINE B4 -106 186 3 1 1027 1064 23 0 8 chr11 57944925 57945049 -63898807 + B1_Mus1 SINE Alu 18 141 -7 1 1027 186 43 0 0 chr11 57945049 57945072 -63898784 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 1 1027 314 234 0 3 chr11 57945097 57945167 -63898689 + B1_Mur4 SINE Alu 2 70 -78 1 1027 797 50 240 16 chr11 57945456 57945577 -63898279 - B1_Mus1 SINE Alu 0 148 1 1 1027 820 168 202 22 chr11 57946096 57946279 -63897577 + B3 SINE B2 1 216 0 1 1027 770 256 58 0 chr11 57946379 57946570 -63897286 + B3 SINE B2 1 202 -14 1 1027 735 147 48 66 chr11 57946584 57946751 -63897105 + MYSERV-int LTR ERVK 6149 6283 -267 1 1027 2014 135 31 6 chr11 57946956 57947306 -63896550 + RLTR15 LTR ERVK 1 359 0 1 1027 252 262 105 53 chr11 57947307 57947440 -63896416 + L1MEc LINE L1 2268 2407 -3993 1 1027 1595 212 89 0 chr11 57947569 57947894 -63895962 + MTD LTR MaLR 58 411 -8 1 1027 451 301 26 52 chr11 57947946 57948139 -63895717 + B3A SINE B2 2 189 -9 1 1027 414 0 0 0 chr11 57948858 57948904 -63894952 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1027 393 215 0 0 chr11 57948983 57949048 -63894808 - PB1D9 SINE Alu -1 119 55 1 1027 323 304 96 7 chr11 57949493 57949629 -63894227 - L1MC4a LINE L1 -2018 5864 5717 1 1027 227 309 0 0 chr11 57950240 57950308 -63893548 - PB1D10 SINE Alu -41 76 9 1 1027 186 43 0 0 chr11 57950699 57950722 -63893134 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1 1027 736 186 78 0 chr11 57950728 57950857 -63892999 - B1_Mur4 SINE Alu -11 139 1 1 1027 498 244 43 22 chr11 57950857 57950995 -63892861 - B1F SINE Alu 0 149 9 1 1027 282 313 0 0 chr11 57951570 57951637 -63892219 + B4A SINE B4 83 149 -143 1 1027 23 0 0 0 chr11 57951637 57951660 -63892196 + AT_rich Low_complexity Low_complexity 1 23 0 1 1027 405 74 26 11 chr11 57951987 57952064 -63891792 - B1_Mur4 SINE Alu 0 150 40 1 1027 293 276 45 30 chr11 57953167 57953262 -63890594 + PB1D7 SINE Alu 14 104 -43 1 1027 336 256 107 33 chr11 57953506 57953627 -63890229 - RSINE1 SINE B4 -33 132 3 1 1027 2099 102 16 22 chr11 57953912 57954233 -63889623 + ORR1A2 LTR MaLR 1 319 -8 1 1027 1495 161 74 3 chr11 57954343 57954650 -63889206 + ORR1C2 LTR MaLR 1 384 0 1 1027 1179 218 19 0 chr11 57954735 57954946 -63888910 + B3 SINE B2 2 216 0 1 1027 2620 13 3 0 chr11 57955589 57955898 -63887958 + MT-int LTR MaLR 713 1022 -76 1 1027 1329 14 0 0 chr11 57956597 57956744 -63887112 - B1_Mus2 SINE Alu 0 147 1 1 1027 28 48 0 0 chr11 57956864 57956906 -63886950 + AT_rich Low_complexity Low_complexity 1 42 0 1 1027 386 39 19 0 chr11 57956979 57957031 -63886825 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1027 510 202 0 83 chr11 57957035 57957143 -63886713 - RSINE1 SINE B4 -44 121 23 1 1027 2174 180 23 72 chr11 57957146 57957589 -63886267 + RMER15 LTR ERVL 1 421 -154 1 1027 205 161 0 0 chr11 57957633 57957664 -63886192 + (CCTA)n Simple_repeat Simple_repeat 3 33 0 1 1027 225 0 0 0 chr11 57957665 57957690 -63886166 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 1 1027 458 272 23 60 chr11 57957784 57957917 -63885939 - RSINE1 SINE B4 -19 146 19 1 1027 329 222 0 14 chr11 57957914 57957987 -63885869 + MT2A LTR ERVL 16 87 -446 1 1027 538 231 0 93 chr11 57957996 57958125 -63885731 - B1_Mur2 SINE Alu 0 117 1 1 1027 1368 194 110 0 chr11 57958125 57958502 -63885354 + MT2A LTR ERVL 69 529 -4 1 1027 227 284 89 82 chr11 57958554 57958700 -63885156 - L1MC4 LINE L1 -1064 6978 6832 1 1027 511 285 41 7 chr11 57959329 57959474 -63884382 + RSINE1 SINE B4 11 160 -5 1 1027 222 194 0 0 chr11 57959474 57959510 -63884346 + (TCTCTG)n Simple_repeat Simple_repeat 3 38 0 1 1027 1915 193 136 0 chr11 57960152 57960593 -63883263 + Lx9 LINE L1 7136 7636 -8 1 1027 808 215 20 20 chr11 57960909 57961104 -63882752 + B2_Mm2 SINE B2 1 195 0 1 1027 261 201 261 37 chr11 57961159 57961293 -63882563 + ID_B1 SINE B4 53 216 -8 1 1027 1439 70 43 0 chr11 57962152 57962338 -63881518 - B2_Mm2 SINE B2 -1 194 1 1 1027 192 77 0 0 chr11 57962604 57962630 -63881226 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1027 292 224 17 0 chr11 57962636 57962694 -63881162 - RSINE1 SINE B4 -105 60 2 1 1027 1261 103 43 0 chr11 57963009 57963193 -63880663 + B2_Mm2 SINE B2 1 192 -3 1 1027 397 177 68 4 chr11 57963519 57963603 -63880253 + PB1D10 SINE Alu 22 115 -33 1 1027 663 133 32 32 chr11 57963657 57963781 -63880075 + B1_Mur1 SINE Alu 23 146 -3 1 1027 1260 34 0 7 chr11 57965349 57965497 -63878359 - B1_Mus2 SINE Alu 0 147 1 1 1027 288 305 196 44 chr11 57965603 57965653 -63878203 - B4 SINE B4 -20 272 91 1 1027 605 194 19 0 chr11 57965653 57965761 -63878095 - PB1D9 SINE Alu -5 115 6 1 1027 1442 177 148 3 chr11 57966264 57966581 -63877275 + ORR1D1 LTR MaLR 1 363 -11 1 1027 235 341 12 0 chr11 57966869 57966954 -63876902 + Charlie5 DNA MER1_type 27 112 -2512 1 1027 230 239 87 29 chr11 57967082 57967151 -63876705 + PB1D9 SINE Alu 47 119 -1 1 1027 318 141 26 78 chr11 57967138 57967215 -63876641 + RLTR25B LTR ERVK 426 498 -530 1 1027 750 132 26 0 chr11 57967150 57967264 -63876592 + B1_Mur4 SINE Alu 34 150 0 1 1027 547 256 64 0 chr11 57967328 57967453 -63876403 + ID_B1 SINE B4 92 224 0 1 1027 1172 195 24 0 chr11 57967494 57967704 -63876152 - B3 SINE B2 0 216 2 1 1027 252 0 0 0 chr11 57968219 57968247 -63875609 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1 1027 439 307 78 6 chr11 57968291 57968458 -63875398 - ID_B1 SINE B4 -45 179 1 1 1027 224 211 0 0 chr11 57968835 57968873 -63874983 + RSINE1 SINE B4 12 49 -116 1 1027 211 217 17 0 chr11 57968908 57968968 -63874888 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1027 486 193 233 8 chr11 57969374 57969494 -63874362 - B1_Mus1 SINE Alu -1 147 1 1 1027 508 284 119 0 chr11 57969826 57970020 -63873836 + ID_B1 SINE B4 1 217 -7 1 1027 204 40 0 0 chr11 57970672 57970697 -63873159 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1027 692 156 83 69 chr11 57970698 57970843 -63873013 + B1_Mur4 SINE Alu 2 148 -2 1 1027 633 241 28 42 chr11 57970985 57971113 -63872743 + B1_Mur2 SINE Alu 8 137 -12 1 1027 180 77 0 0 chr11 57971113 57971139 -63872717 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1027 645 274 32 0 chr11 57971139 57971296 -63872560 + RSINE1 SINE B4 2 163 -2 1 1027 633 241 28 42 chr11 57971296 57971309 -63872547 + B1_Mur2 SINE Alu 138 147 -2 1 1027 800 194 8 0 chr11 57971383 57971512 -63872344 - B3 SINE B2 -86 130 1 1 1027 189 0 0 0 chr11 57971661 57971682 -63872174 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1027 1120 73 0 0 chr11 57971683 57971819 -63872037 - B1_Mus1 SINE Alu -12 136 1 1 1027 476 227 0 43 chr11 57971826 57971918 -63871938 + B3 SINE B2 37 124 -92 1 1027 582 209 69 15 chr11 57971986 57972117 -63871739 - B1F SINE Alu -7 142 5 1 1027 672 300 81 0 chr11 57972394 57972604 -63871252 + MER21B LTR ERV1 90 316 -547 1 1027 362 174 29 14 chr11 57972899 57972969 -63870887 + PB1D10 SINE Alu 34 104 -13 1 1027 1236 82 0 0 chr11 57972969 57973139 -63870717 + (GAAA)n Simple_repeat Simple_repeat 1 170 0 1 1027 6011 83 14 43 chr11 57973144 57974043 -63869813 + L1_Mus3 LINE L1 5764 6636 -2 1 1027 222 118 0 0 chr11 57974058 57974092 -63869764 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1 1027 500 288 109 98 chr11 57974458 57974743 -63869113 + B4A SINE B4 1 288 -4 1 1027 542 270 72 24 chr11 57974877 57975044 -63868812 + B4 SINE B4 3 177 -115 1 1027 1073 183 37 0 chr11 57975255 57975446 -63868410 - URR1A DNA MER1_type 0 226 29 1 1027 618 163 169 8 chr11 57975527 57975651 -63868205 + B1_Mur3 SINE Alu 5 148 -1 1 1027 283 233 156 0 chr11 57975935 57976025 -63867831 + B4A SINE B4 1 104 -188 1 1027 398 119 17 0 chr11 57976170 57976229 -63867627 + B1_Mur2 SINE Alu 52 111 -38 1 1027 777 244 200 10 chr11 57976483 57976789 -63867067 + MTD LTR MaLR 43 405 -14 1 1027 588 303 76 15 chr11 57976947 57977145 -63866711 + B3 SINE B2 2 211 -5 1 1027 261 213 124 44 chr11 57977175 57977274 -63866582 + MTD LTR MaLR 275 405 -14 1 1027 735 129 177 0 chr11 57977433 57977580 -63866276 - B2_Mm2 SINE B2 -3 192 20 1 1027 536 317 84 0 chr11 57978297 57978499 -63865357 - ID_B1 SINE B4 -5 219 1 1 1027 902 231 35 10 chr11 57978646 57978847 -63865009 + B3 SINE B2 1 206 -10 1 1027 370 227 67 83 chr11 57979716 57979836 -63864020 - PB1D7 SINE Alu 0 120 3 1 1027 575 225 122 32 chr11 57979878 57980034 -63863822 - B3 SINE B2 -46 170 1 1 1027 263 294 35 12 chr11 57980050 57980136 -63863720 - RSINE1 SINE B4 -4 161 74 1 1027 580 237 113 43 chr11 57980148 57980333 -63863523 + B3A SINE B2 1 198 0 1 1027 1272 34 0 0 chr11 57980534 57980681 -63863175 + B1_Mus2 SINE Alu 1 147 0 1 1027 419 261 121 9 chr11 57980712 57980828 -63863028 + B2_Mm2 SINE B2 1 129 -66 1 1027 195 42 0 0 chr11 57980875 57980899 -63862957 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1027 700 218 63 7 chr11 57980904 57981047 -63862809 - ID_B1 SINE B4 -62 162 12 1 1027 357 82 0 0 chr11 57982200 57982249 -63861607 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1027 350 197 28 0 chr11 57982271 57982342 -63861514 + HAL1-3A_ME LINE L1 1976 2048 -810 1 1027 1200 36 0 0 chr11 57982567 57982704 -63861152 - B1_Mus2 SINE Alu -9 138 2 1 1027 243 0 0 0 chr11 57982709 57982736 -63861120 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1027 339 166 128 61 chr11 57982829 57982928 -63860928 + PB1D7 SINE Alu 27 124 -3 1 1027 425 243 51 51 chr11 57983347 57983464 -63860392 - RSINE1 SINE B4 -1 164 48 1 1027 901 163 7 7 chr11 57983511 57983659 -63860197 - B1_Mur1 SINE Alu 0 149 2 1 1027 572 243 64 0 chr11 57983732 57983872 -63859984 - B1F1 SINE Alu 0 149 1 1 1027 2486 140 31 159 chr11 57983992 57984031 -63859825 + RLTR24 LTR ERV1 1 39 -490 1 1027 1637 52 0 0 chr11 57984031 57984223 -63859633 - B2_Mm1t SINE B2 0 193 2 1 1027 2486 140 31 159 chr11 57984223 57984416 -63859440 + RLTR24 LTR ERV1 40 198 -331 1 1027 1187 68 0 0 chr11 57984416 57984562 -63859294 + B1_Mus2 SINE Alu 2 147 0 1 1027 2486 140 31 159 chr11 57984562 57984932 -63858924 + RLTR24 LTR ERV1 199 527 -2 1 1027 186 351 26 51 chr11 57986143 57986221 -63857635 - L3 LINE CR1 -1286 3203 3128 1 1027 221 292 41 14 chr11 57986259 57986332 -63857524 - MIR3 SINE MIR -32 176 102 1 1027 561 221 99 0 chr11 57986702 57986833 -63857023 - B1_Mur1 SINE Alu -5 144 1 1 1027 294 152 0 0 chr11 57987014 57987073 -63856783 + (CAT)n Simple_repeat Simple_repeat 3 61 0 1 1027 668 199 76 0 chr11 57987075 57987206 -63856650 - B1_Mur3 SINE Alu -4 145 5 1 1027 614 60 30 0 chr11 57987657 57987756 -63856100 + B1_Mus1 SINE Alu 29 128 -21 1 1027 1870 152 76 38 chr11 57987814 57988157 -63855699 - ORR1B2 LTR MaLR -8 359 4 1 1027 682 187 194 0 chr11 57988381 57988536 -63855320 + B3 SINE B2 20 204 -12 1 1027 1049 123 141 0 chr11 57989416 57989586 -63854270 - B2_Mm2 SINE B2 -1 194 1 1 1027 318 278 0 0 chr11 57990001 57990073 -63853783 - ID4_ SINE ID -10 73 2 1 1027 246 32 0 0 chr11 57990087 57990118 -63853738 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1027 345 205 47 24 chr11 57990492 57990577 -63853279 + PB1D9 SINE Alu 34 120 0 1 1027 264 59 0 0 chr11 57990583 57990617 -63853239 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1027 663 217 17 0 chr11 57991069 57991184 -63852672 + B1_Mur3 SINE Alu 8 124 -25 1 1027 878 217 0 26 chr11 57991267 57991456 -63852400 - B2_Mm2 SINE B2 -11 184 1 1 1027 344 291 51 63 chr11 57991820 57991978 -63851878 - RSINE1 SINE B4 -9 156 1 1 1027 227 264 0 165 chr11 57992214 57992323 -63851533 + MT2B LTR ERVL 160 250 -351 1 1027 739 45 212 9 chr11 57992231 57992344 -63851512 + B1_Mus2 SINE Alu 12 147 0 1 1027 180 0 0 0 chr11 57992344 57992364 -63851492 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1027 414 231 168 28 chr11 57992364 57992471 -63851385 - ID_B1 SINE B4 -34 190 69 1 1027 447 19 0 0 chr11 57993115 57993167 -63850689 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1027 277 223 53 0 chr11 57993327 57993418 -63850438 - L1M3 LINE L1 -1525 4615 4540 1 1027 301 143 0 18 chr11 57993474 57993531 -63850325 - B1_Mur3 SINE Alu 0 149 94 1 1027 386 216 9 157 chr11 57993529 57993613 -63850243 - ORR1D1 LTR MaLR -280 98 17 1 1027 1476 74 16 0 chr11 57993613 57993803 -63850053 - B2_Mm2 SINE B2 0 195 3 1 1027 366 216 9 157 chr11 57993803 57993833 -63850023 - ORR1D1 LTR MaLR -356 22 1 1 1027 1072 214 29 0 chr11 57993856 57994062 -63849794 - B3 SINE B2 -2 214 3 1 1027 231 36 0 0 chr11 57994068 57994096 -63849760 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1027 1287 20 0 0 chr11 57994096 57994242 -63849614 - B1_Mm SINE Alu 0 147 2 1 1027 309 291 215 0 chr11 57994242 57994414 -63849442 + L1M2 LINE L1 4842 5050 -1093 1 1027 811 157 0 23 chr11 57994578 57994708 -63849148 + B1_Mur1 SINE Alu 23 149 0 1 1027 242 286 205 43 chr11 57995181 57995342 -63848514 + MLT1D LTR MaLR 180 366 -139 1 1027 204 171 43 0 chr11 57995347 57995406 -63848450 + CT-rich Low_complexity Low_complexity 14 74 0 1 1027 1212 54 0 0 chr11 57995406 57995553 -63848303 - B1_Mus2 SINE Alu 0 147 1 1 1027 954 63 0 0 chr11 57995570 57995696 -63848160 + (TC)n Simple_repeat Simple_repeat 1 126 0 1 1027 734 218 132 11 chr11 57996009 57996199 -63847657 - ID_B1 SINE B4 -10 214 2 1 1027 230 237 17 17 chr11 57996199 57996259 -63847597 + MLT1D LTR MaLR 364 423 -82 1 1027 1371 74 17 6 chr11 57996947 57997124 -63846732 + B2_Mm2 SINE B2 2 180 -15 1 1027 198 0 0 0 chr11 57997127 57997149 -63846707 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1027 26 0 0 0 chr11 57997598 57997624 -63846232 + AT_rich Low_complexity Low_complexity 1 26 0 1 1027 380 216 14 0 chr11 57998127 57998201 -63845655 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 1 1027 609 271 69 0 chr11 57999208 57999352 -63844504 + RSINE1 SINE B4 8 161 -4 1 1027 313 205 115 86 chr11 57999449 57999588 -63844268 - L1MC1 LINE L1 0 6333 6191 1 1027 377 282 19 37 chr11 57999838 58000000 -63843856 - L1MC1 LINE L1 -479 5854 5696 1 1027 243 231 0 58 chr11 58000056 58000125 -63843731 - L1MC LINE L1 -2175 5610 5546 1 1027 276 133 0 0 chr11 58000130 58000190 -63843666 + (T)n Simple_repeat Simple_repeat 1 60 0 2 1027 852 192 0 0 chr11 58000190 58000336 -63843520 - B1_Mus1 SINE Alu 0 148 3 3 1027 450 208 70 83 chr11 58000336 58000493 -63843363 - L1MC LINE L1 -842 5304 5150 1 1027 905 196 5 73 chr11 58000505 58000709 -63843147 - B3A SINE B2 -4 194 5 4 1027 301 325 0 0 chr11 58000809 58000886 -63842970 - ID4_ SINE ID -6 77 1 5 1027 623 143 74 107 chr11 58002751 58002900 -63840956 - B1_Mur2 SINE Alu -3 146 3 6 1027 22 35 0 0 chr11 58002903 58002932 -63840924 + AT_rich Low_complexity Low_complexity 1 29 0 7 1027 670 242 0 149 chr11 58003552 58003766 -63840090 + B3A SINE B2 1 182 -16 8 1027 1159 84 79 0 chr11 58003814 58003992 -63839864 + B2_Mm1a SINE B2 2 193 0 9 1027 924 75 93 43 chr11 58004007 58004135 -63839721 + B1_Mus2 SINE Alu 1 138 -9 1 1027 303 85 0 0 chr11 58004135 58004182 -63839674 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1027 924 75 93 43 chr11 58004182 58004193 -63839663 + B1_Mus2 SINE Alu 139 147 0 1 1027 902 138 69 0 chr11 58004782 58004927 -63838929 + B2_Mm2 SINE B2 2 156 -39 1 1027 354 23 0 0 chr11 58004962 58005005 -63838851 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1027 506 157 175 42 chr11 58005005 58005125 -63838731 - B1_Mur2 SINE Alu -12 137 2 1 1027 803 172 236 56 chr11 58005200 58005569 -63838287 - RMER10A LTR ERVL -5 437 3 1 1027 361 261 117 70 chr11 58006595 58006723 -63837133 - RSINE1 SINE B4 -17 148 15 1 1027 604 77 0 0 chr11 58008062 58008140 -63835716 + B1_Mus1 SINE Alu 1 78 -70 1 1027 630 237 62 56 chr11 58008145 58008160 -63835696 - B3A SINE B2 -16 182 169 1 1027 216 0 0 0 chr11 58008160 58008184 -63835672 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 1 1027 630 237 62 56 chr11 58008184 58008347 -63835509 - B3A SINE B2 -30 168 3 1 1027 593 296 39 104 chr11 58008686 58008995 -63834861 + B4A SINE B4 2 290 -2 2 1027 264 77 0 0 chr11 58009595 58009634 -63834222 + (GGA)n Simple_repeat Simple_repeat 2 40 0 2 1027 258 224 0 0 chr11 58010895 58010934 -63832922 + polypyrimidine Low_complexity Low_complexity 30 68 0 2 1027 1146 80 11 11 chr11 58010934 58011111 -63832745 + (TTCC)n Simple_repeat Simple_repeat 1 177 0 2 1027 258 224 0 0 chr11 58011111 58011138 -63832718 + polypyrimidine Low_complexity Low_complexity 3 29 0 2 1027 782 109 25 0 chr11 58011138 58011257 -63832599 - B1_Mur3 SINE Alu -1 148 27 2 1027 983 257 103 8 chr11 58011549 58011812 -63832044 - B4 SINE B4 -2 290 3 2 1027 792 111 0 0 chr11 58011937 58012045 -63831811 + B2_Mm2 SINE B2 10 117 -78 2 1027 971 69 15 15 chr11 58012047 58012179 -63831677 + B1_Mus1 SINE Alu 2 133 -15 2 1027 289 41 60 20 chr11 58012482 58012532 -63831324 + (AGGGGG)n Simple_repeat Simple_repeat 3 54 0 2 1027 925 253 72 50 chr11 58013939 58014218 -63829638 - B4A SINE B4 -7 285 1 3 1027 235 178 40 27 chr11 58014325 58014400 -63829456 + T-rich Low_complexity Low_complexity 4 79 0 3 1027 395 190 284 0 chr11 58014434 58014550 -63829306 + B4A SINE B4 73 221 -71 3 1027 742 102 19 0 chr11 58014448 58014556 -63829300 + PB1D9 SINE Alu 11 120 0 3 1027 186 43 0 0 chr11 58014556 58014579 -63829277 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1027 243 0 0 0 chr11 58015726 58015753 -63828103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1027 1180 61 0 7 chr11 58015755 58015903 -63827953 - B1_Mus1 SINE Alu 0 148 2 3 1027 432 0 0 0 chr11 58015912 58015960 -63827896 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 1027 440 189 137 0 chr11 58015960 58016055 -63827801 - PB1D9 SINE Alu -12 108 1 3 1027 1105 241 5 5 chr11 58016111 58016328 -63827528 - ID_B1 SINE B4 0 224 8 3 1027 180 71 0 87 chr11 58016336 58016382 -63827474 + CT-rich Low_complexity Low_complexity 1 42 0 4 1027 1226 180 36 16 chr11 58016388 58016594 -63827262 - RMER5 LTR ERV1 -20 514 302 4 1027 717 45 0 0 chr11 58016594 58016683 -63827173 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 4 1027 932 65 98 0 chr11 58016685 58016808 -63827048 - B1_Mus2 SINE Alu -11 136 2 4 1027 1226 180 36 16 chr11 58016808 58016846 -63827010 - RMER5 LTR ERV1 -233 301 264 4 1027 1451 64 27 0 chr11 58016850 58017037 -63826819 - B2_Mm1t SINE B2 0 193 2 4 1027 554 146 52 0 chr11 58017069 58017165 -63826691 - RMER5 LTR ERV1 -22 512 412 4 1027 1507 221 130 37 chr11 58017234 58017689 -63826167 - RLTR20B3 LTR ERVK -80 497 1 4 1027 588 252 97 26 chr11 58018076 58018147 -63825709 + B4 SINE B4 3 84 -208 4 1027 490 157 254 57 chr11 58018147 58018269 -63825587 + B1_Mus2 SINE Alu 1 146 -1 4 1027 407 162 44 0 chr11 58018291 58018359 -63825497 + B1_Mur2 SINE Alu 74 144 -5 4 1027 210 37 0 0 chr11 58018359 58018386 -63825470 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 5 1027 527 226 122 14 chr11 58018394 58018524 -63825332 + B4 SINE B4 81 225 -67 5 1027 443 211 11 0 chr11 58018524 58018614 -63825242 + B3 SINE B2 2 92 -124 5 1027 372 190 0 48 chr11 58018687 58018770 -63825086 + B4 SINE B4 214 292 0 5 1027 408 171 0 0 chr11 58018770 58018852 -63825004 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1027 549 228 163 0 chr11 58018889 58019012 -63824844 - B1_Mur1 SINE Alu -6 143 1 5 1027 1025 159 0 36 chr11 58019022 58019218 -63824638 - B2_Mm2 SINE B2 -5 190 2 5 1027 649 227 13 31 chr11 58021218 58021377 -63822479 - RSINE1 SINE B4 -6 159 4 5 1027 373 242 29 79 chr11 58021492 58021567 -63822289 - MLT1A1 LTR MaLR -2 406 338 5 1027 3285 53 5 0 chr11 58021567 58021965 -63821891 - MTB LTR MaLR 0 400 1 5 1027 373 242 29 79 chr11 58021965 58022028 -63821828 - MLT1A1 LTR MaLR -71 337 275 5 1027 351 0 0 0 chr11 58022164 58022203 -63821653 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1027 796 69 0 0 chr11 58022203 58022305 -63821551 - B1_Mus1 SINE Alu -44 104 3 6 1027 330 26 0 0 chr11 58022365 58022404 -63821452 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1027 2089 108 6 25 chr11 58022426 58022750 -63821106 + RLTR14 LTR ERV1 1 318 -64 6 1027 655 288 126 0 chr11 58022879 58023070 -63820786 - ID_B1 SINE B4 -9 215 1 6 1027 189 0 0 0 chr11 58023143 58023164 -63820692 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1027 765 201 0 28 chr11 58023166 58023309 -63820547 - B1_Mur2 SINE Alu -9 140 2 6 1027 1452 69 21 5 chr11 58023572 58023762 -63820094 - B2_Mm2 SINE B2 -1 194 2 6 1027 769 273 11 33 chr11 58023814 58023996 -63819860 - B3A SINE B2 -16 182 5 6 1027 1984 113 58 61 chr11 58024073 58024403 -63819453 + ORR1A4 LTR MaLR 1 329 0 6 1027 1097 199 129 59 chr11 58024925 58025266 -63818590 - RMER12 LTR ERVK 0 1322 958 6 1027 4443 127 12 92 chr11 58025251 58026083 -63817773 - RMER12 LTR ERVK -557 765 1 6 1027 534 283 69 48 chr11 58026101 58026290 -63817566 - B3A SINE B2 -3 195 3 7 1027 378 0 0 0 chr11 58026315 58026357 -63817499 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1027 3253 56 5 0 chr11 58026741 58027137 -63816719 + MTB LTR MaLR 1 398 -2 7 1027 446 194 44 44 chr11 58028038 58028151 -63815705 + RLTR23 LTR ERV1 314 426 -4 7 1027 479 239 200 0 chr11 58029114 58029244 -63814612 - RSINE1 SINE B4 -7 158 3 7 1027 272 48 0 23 chr11 58029250 58029293 -63814563 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 7 1027 38 22 0 0 chr11 58029320 58029365 -63814491 + AT_rich Low_complexity Low_complexity 1 45 0 7 1027 249 237 174 51 chr11 58029818 58029916 -63813940 + ID_B1 SINE B4 87 196 -28 7 1027 611 276 13 0 chr11 58030003 58030155 -63813701 + RSINE1 SINE B4 3 156 -9 7 1027 31 76 0 0 chr11 58030201 58030267 -63813589 + AT_rich Low_complexity Low_complexity 1 66 0 7 1027 941 297 34 61 chr11 58030304 58030630 -63813226 - MTEa LTR MaLR -62 317 1 8 1027 585 203 122 0 chr11 58030775 58030898 -63812958 + B1_Mur4 SINE Alu 12 149 -1 8 1027 240 35 0 0 chr11 58031032 58031061 -63812795 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1027 1091 90 14 0 chr11 58031898 58032043 -63811813 - B1_Mus1 SINE Alu -1 147 1 8 1027 2355 67 13 9 chr11 58032210 58032528 -63811328 - ORR1A2 LTR MaLR -8 319 1 8 1027 692 24 0 0 chr11 58035035 58035118 -63808738 - B1_Mus2 SINE Alu -21 126 44 8 1027 270 182 0 43 chr11 58035072 58035141 -63808715 - 4.5SRNA scRNA scRNA -8 86 21 8 1027 1283 288 16 3 chr11 58035139 58035453 -63808403 - MTE2b LTR MaLR -61 318 1 8 1027 252 282 103 0 chr11 58035499 58035577 -63808279 + BC1_Mm scRNA scRNA 3 88 -64 8 1027 207 284 39 10 chr11 58036131 58036234 -63807622 + (TA)n Simple_repeat Simple_repeat 1 106 0 8 1027 241 117 16 16 chr11 58036431 58036492 -63807364 + (TA)n Simple_repeat Simple_repeat 1 61 0 9 1027 688 228 142 27 chr11 58036992 58037217 -63806639 + RMER15 LTR ERVL 325 575 0 9 1027 1119 38 0 0 chr11 58037683 58037816 -63806040 - B1_Mm SINE Alu -6 141 9 9 1027 641 74 11 0 chr11 58037967 58038062 -63805794 - RMER17D2 LTR ERVK 0 809 714 9 1027 180 0 0 0 chr11 58038149 58038169 -63805687 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1027 894 68 0 0 chr11 58038366 58038484 -63805372 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 9 1027 1319 85 11 0 chr11 58038484 58038660 -63805196 - B2_Mm1t SINE B2 -14 179 2 9 1027 358 127 25 112 chr11 58039787 58039867 -63803989 + B3A SINE B2 3 75 -123 9 1027 297 0 0 0 chr11 58039904 58039937 -63803919 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1027 639 0 0 0 chr11 58039937 58040007 -63803849 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 1027 529 304 6 24 chr11 58040051 58040216 -63803640 + RSINE1 SINE B4 3 164 -1 1 1027 280 86 42 28 chr11 58040447 58040519 -63803337 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1027 714 199 0 29 chr11 58040535 58040675 -63803181 + B1F2 SINE Alu 1 136 -13 1 1027 496 206 7 7 chr11 58040677 58040819 -63803037 + GA-rich Low_complexity Low_complexity 2 143 0 1 1027 1524 228 21 65 chr11 58040873 58041257 -63802599 + MTE2a LTR MaLR 13 379 0 1 1027 1066 93 14 0 chr11 58041358 58041497 -63802359 + B1_Mus1 SINE Alu 2 142 -6 1 1027 1214 99 41 0 chr11 58041528 58041700 -63802156 - B2_Mm2 SINE B2 -14 181 3 1 1027 275 221 29 0 chr11 58041700 58041768 -63802088 - L1M2 LINE L1 -633 5667 5598 1 1027 1180 75 0 0 chr11 58041807 58041954 -63801902 + B1_Mus2 SINE Alu 1 147 0 1 1027 540 81 0 0 chr11 58041956 58042030 -63801826 + (GGA)n Simple_repeat Simple_repeat 2 75 0 1 1027 531 0 0 0 chr11 58042315 58042374 -63801482 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1027 364 256 0 24 chr11 58042429 58042513 -63801343 + RSINE1 SINE B4 53 134 -31 1 1027 416 299 112 51 chr11 58042723 58043019 -63800837 - L1MC4a LINE L1 -113 7769 7456 1 1027 198 0 0 0 chr11 58045420 58045442 -63798414 + (TCC)n Simple_repeat Simple_repeat 3 24 0 1 1027 261 242 132 139 chr11 58046361 58046505 -63797351 - MER20 DNA MER1_type -15 204 62 1 1027 295 287 45 27 chr11 58046517 58046628 -63797228 + RSINE1 SINE B4 2 114 -51 1 1027 349 286 67 0 chr11 58046658 58046763 -63797093 + MER3 DNA MER1_type 21 132 -77 1 1027 793 216 23 16 chr11 58046826 58047010 -63796846 + B3A SINE B2 12 186 -9 1 1027 435 231 57 9 chr11 58047041 58047146 -63796710 - ID_B1 SINE B4 -1 223 114 1 1027 748 200 43 0 chr11 58047188 58047328 -63796528 - B1_Mur2 SINE Alu 0 149 4 1 1027 1045 128 0 0 chr11 58047420 58047561 -63796295 + B1_Mus2 SINE Alu 1 141 -6 1 1027 188 35 35 0 chr11 58047563 58047592 -63796264 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1027 514 268 48 63 chr11 58047635 58047841 -63796015 + MLT1F2 LTR MaLR 2 204 -356 1 1027 347 219 129 55 chr11 58047841 58047993 -63795863 - RLTR13D3 LTR ERVK 0 1114 981 1 1027 261 0 0 0 chr11 58047997 58048026 -63795830 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1027 273 79 0 0 chr11 58048275 58048313 -63795543 - B2_Mm2 SINE B2 -157 38 1 1 1027 497 159 65 34 chr11 58049136 58049250 -63794606 + B1F1 SINE Alu 24 136 -12 1 1027 277 274 147 0 chr11 58049486 58049581 -63794275 - RSINE1 SINE B4 -52 113 5 1 1027 468 0 0 0 chr11 58050697 58050749 -63793107 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1027 1022 93 36 0 chr11 58051265 58051404 -63792452 + B1_Mur4 SINE Alu 1 144 -6 1 1027 227 70 85 34 chr11 58051405 58051464 -63792392 + (CAAAC)n Simple_repeat Simple_repeat 3 64 0 1 1027 656 289 12 6 chr11 58051499 58051578 -63792278 + ID SINE ID 2 81 -143 1 1027 245 336 46 9 chr11 58051578 58051686 -63792170 + B1_Mus2 SINE Alu 1 112 -35 1 1027 331 196 0 0 chr11 58051975 58052031 -63791825 + ID_B1 SINE B4 143 198 -26 1 1027 267 243 122 0 chr11 58051977 58052051 -63791805 + B1F SINE Alu 67 149 0 1 1027 24 85 0 0 chr11 58052051 58052110 -63791746 + AT_rich Low_complexity Low_complexity 1 59 0 1 1027 5205 66 0 3 chr11 58053307 58053972 -63789884 - L1_Mus2 LINE L1 -423 5460 4798 1 1027 6545 64 3 1 chr11 58053936 58054868 -63788988 + L1_Mus2 LINE L1 5445 6382 -184 1 1027 26 50 0 0 chr11 58055445 58055485 -63788371 + AT_rich Low_complexity Low_complexity 1 40 0 1 1027 627 39 0 0 chr11 58055508 58055586 -63788270 + (TATG)n Simple_repeat Simple_repeat 2 79 0 1 1027 213 135 27 0 chr11 58056012 58056049 -63787807 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1 1027 915 264 57 13 chr11 58056167 58056466 -63787390 + L1MA9 LINE L1 5476 5787 -504 1 1027 226 325 0 83 chr11 58056665 58056749 -63787107 + B3A SINE B2 117 193 -5 1 1027 1089 58 29 0 chr11 58056751 58056888 -63786968 + B1_Mus1 SINE Alu 2 142 -6 1 1027 329 0 24 0 chr11 58056889 58056930 -63786926 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1027 810 264 70 53 chr11 58056930 58057286 -63786570 + L1MA9 LINE L1 5779 6140 -172 1 1027 337 269 76 76 chr11 58057747 58057892 -63785964 - RMER30 DNA MER1_type -49 153 9 1 1027 1514 73 0 0 chr11 58057996 58058187 -63785669 + B2_Mm1t SINE B2 1 191 -2 1 1027 798 280 33 26 chr11 58058194 58058465 -63785391 + Lx8 LINE L1 7178 7450 -23 1 1027 180 0 0 0 chr11 58058567 58058587 -63785269 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1 1027 1620 7 0 0 chr11 58058695 58058986 -63784870 + (TTC)n Simple_repeat Simple_repeat 1 291 0 1 1027 1290 65 0 0 chr11 58058990 58059159 -63784697 + (TTCTCC)n Simple_repeat Simple_repeat 3 171 0 1 1027 676 251 40 60 chr11 58059183 58059382 -63784474 - B3A SINE B2 0 198 4 1 1027 316 263 62 21 chr11 58059390 58059487 -63784369 - PB1D9 SINE Alu 0 120 20 1 1027 369 167 0 0 chr11 58059521 58059599 -63784257 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1027 329 326 134 7 chr11 58059646 58059788 -63784068 + B3A SINE B2 1 160 -38 1 1027 1605 191 101 68 chr11 58059792 58059983 -63783873 - MTD LTR MaLR -8 411 199 1 1027 1255 103 49 0 chr11 58059983 58060167 -63783689 - B2_Mm2 SINE B2 0 195 3 1 1027 1605 191 101 68 chr11 58060167 58060323 -63783533 - MTD LTR MaLR -221 198 50 1 1027 725 159 193 0 chr11 58060323 58060499 -63783357 + B3 SINE B2 1 210 -6 1 1027 1605 191 101 68 chr11 58060499 58060548 -63783308 - MTD LTR MaLR -370 49 1 1 1027 314 209 29 29 chr11 58062076 58062145 -63781711 + RMER15 LTR ERVL 1 69 -506 1 1027 949 258 126 4 chr11 58062300 58062381 -63781475 + RMER15 LTR ERVL 274 363 -212 1 1027 180 0 0 0 chr11 58062381 58062401 -63781455 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1 1027 949 258 126 4 chr11 58062401 58062588 -63781268 + RMER15 LTR ERVL 364 574 -1 1 1027 556 292 111 93 chr11 58062603 58063098 -63780758 - MLT1D LTR MaLR -1 504 1 1 1027 187 239 11 11 chr11 58063536 58063625 -63780231 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1027 243 88 0 0 chr11 58063864 58063898 -63779958 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1027 389 294 88 61 chr11 58064058 58064286 -63779570 - L1MA5A LINE L1 -385 5912 5679 1 1027 297 125 0 0 chr11 58064345 58064401 -63779455 + (CCTG)n Simple_repeat Simple_repeat 2 57 0 1 1027 1254 95 0 0 chr11 58064404 58064583 -63779273 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1027 298 248 54 18 chr11 58064583 58064694 -63779162 - L1MA5A LINE L1 -713 5590 5476 1 1027 280 215 21 151 chr11 58064701 58064716 -63779140 + MT2B LTR ERVL 153 233 -368 1 1027 450 231 0 0 chr11 58064716 58064794 -63779062 + B1_Mur3 SINE Alu 1 78 -71 1 128 1292 81 29 6 chr11 58064856 58065031 -63778825 + B2_Mm2 SINE B2 1 179 -16 1 1028 315 65 0 0 chr11 58065032 58065078 -63778778 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1028 406 276 166 0 chr11 58065130 58065375 -63778481 - L1MA5A LINE L1 -777 5366 5051 1 1028 1190 54 14 0 chr11 58065408 58065555 -63778301 - B1_Mur3 SINE Alu 0 149 1 1 1028 413 183 0 0 chr11 58065582 58065653 -63778203 + C-rich Low_complexity Low_complexity 3 73 0 1 1028 713 176 0 7 chr11 58065653 58065796 -63778060 + CT-rich Low_complexity Low_complexity 1 142 0 1 1028 223 136 16 48 chr11 58065799 58065852 -63778004 + T-rich Low_complexity Low_complexity 11 61 0 1 1028 1332 33 0 27 chr11 58065852 58066037 -63777819 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1028 382 196 21 0 chr11 58066079 58066176 -63777680 + CT-rich Low_complexity Low_complexity 1 99 0 1 1028 307 147 44 0 chr11 58066207 58066275 -63777581 + CT-rich Low_complexity Low_complexity 3 73 0 1 1028 1176 81 0 0 chr11 58066275 58066436 -63777420 + (TTTC)n Simple_repeat Simple_repeat 3 163 0 1 1028 510 221 48 0 chr11 58066437 58066541 -63777315 - PB1D9 SINE Alu -11 109 1 1 1028 698 324 97 52 chr11 58066545 58067244 -63776612 - L1MA5A LINE L1 -1139 5004 4243 1 1028 22 0 0 0 chr11 58067264 58067286 -63776570 + AT_rich Low_complexity Low_complexity 1 22 0 1 1028 989 94 65 0 chr11 58067286 58067424 -63776432 - B1_Mus1 SINE Alu 0 148 2 1 1028 318 113 161 0 chr11 58067496 58067558 -63776298 - B1_Mur4 SINE Alu -1 149 78 1 1028 322 271 191 11 chr11 58067684 58067867 -63775989 - L1MA5A LINE L1 -1871 4272 4057 1 1028 466 243 68 0 chr11 58067892 58067995 -63775861 - PB1D9 SINE Alu -10 110 1 1 1028 806 242 16 18 chr11 58068002 58068208 -63775648 - B3A SINE B2 -1 215 7 1 1028 1000 273 21 114 chr11 58068208 58068263 -63775593 - L1MA5A LINE L1 -2055 4088 4044 1 1028 1240 54 0 0 chr11 58068263 58068410 -63775446 - B1_Mus2 SINE Alu 0 147 1 1 1028 1000 276 22 114 chr11 58068410 58068967 -63774889 - L1MA5A LINE L1 -2100 4043 3528 1 1028 839 170 20 0 chr11 58068967 58069114 -63774742 - B1_Mur4 SINE Alu 0 150 1 1 1028 354 321 33 118 chr11 58069114 58069149 -63774707 - L1MA5A LINE L1 -2320 3527 3492 1 1028 1650 26 0 20 chr11 58069149 58069345 -63774511 - B2_Mm1a SINE B2 0 193 2 1 1028 354 321 33 118 chr11 58069345 58069475 -63774381 - L1MA5A LINE L1 -2356 3491 3375 1 1028 1403 301 100 57 chr11 58069921 58070457 -63773399 - L1M4c LINE L1 -2844 3535 2999 1 1028 445 328 75 36 chr11 58070457 58070738 -63773118 - B4A SINE B4 0 292 1 1 1028 1403 301 100 57 chr11 58070738 58070926 -63772930 - L1M4c LINE L1 -3381 2998 2809 1 1028 1073 23 8 0 chr11 58070926 58071058 -63772798 + (TCTA)n Simple_repeat Simple_repeat 3 135 0 1 1028 1403 287 116 41 chr11 58071058 58071476 -63772380 - L1M4c LINE L1 -3571 2808 2331 1 1028 461 246 23 15 chr11 58071517 58071649 -63772207 - B1F SINE Alu -16 133 1 1 1028 763 241 25 6 chr11 58071930 58072093 -63771763 + ID_B1 SINE B4 47 212 -12 1 1028 741 202 50 80 chr11 58072429 58072628 -63771228 - B3A SINE B2 -3 195 3 1 1028 551 117 11 0 chr11 58072943 58073037 -63770819 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1028 761 239 124 15 chr11 58073054 58073313 -63770543 - B4 SINE B4 -4 288 2 1 1028 728 195 39 0 chr11 58073480 58073608 -63770248 - B1_Mus2 SINE Alu -12 135 3 1 1028 822 120 88 22 chr11 58075211 58075347 -63768509 + B1_Mur2 SINE Alu 5 149 0 1 1028 929 124 15 0 chr11 58075389 58075526 -63768330 + B1_Mur4 SINE Alu 6 144 -6 1 1028 1131 110 9 136 chr11 58075532 58075753 -63768103 + B2_Mm1t SINE B2 1 193 0 1 1028 336 161 0 0 chr11 58075760 58075822 -63768034 + GA-rich Low_complexity Low_complexity 3 64 0 1 1028 452 32 0 16 chr11 58076262 58076325 -63767531 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 1 1028 1009 191 277 21 chr11 58076534 58076866 -63766990 - MTD LTR MaLR 0 419 3 1 1028 239 198 241 11 chr11 58077482 58077569 -63766287 - MLT2B3 LTR ERVL -381 173 67 1 1028 356 292 226 48 chr11 58077849 58077933 -63765923 - B4A SINE B4 0 292 194 2 1028 519 17 0 0 chr11 58077933 58077993 -63765863 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1028 770 178 93 12 chr11 58077994 58078156 -63765700 - B3 SINE B2 -32 163 1 2 1028 735 237 25 6 chr11 58078157 58078314 -63765542 - B4A SINE B4 -65 227 68 2 1028 452 297 30 68 chr11 58078445 58078680 -63765176 + MER31-int LTR ERV1 3612 3837 -1099 2 1028 356 259 112 137 chr11 58078696 58079018 -63764838 + Lx8 LINE L1 7140 7453 -20 2 1028 648 211 23 0 chr11 58079359 58079492 -63764364 + B1F SINE Alu 3 138 -11 2 1028 279 0 0 0 chr11 58079492 58079523 -63764333 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1028 827 276 10 11 chr11 58079611 58079824 -63764032 + B3A SINE B2 8 214 -2 2 1028 633 220 38 8 chr11 58079838 58079971 -63763885 + B1_Mur2 SINE Alu 13 149 0 2 1028 25 0 0 0 chr11 58079976 58080001 -63763855 + AT_rich Low_complexity Low_complexity 1 25 0 2 1028 385 208 28 0 chr11 58080007 58080079 -63763777 + B3A SINE B2 1 74 -124 2 1028 732 231 32 91 chr11 58080054 58080273 -63763583 + B3 SINE B2 11 216 0 2 1028 1215 49 20 0 chr11 58080462 58080666 -63763190 + (TCTA)n Simple_repeat Simple_repeat 1 207 0 2 1028 1358 183 145 48 chr11 58080668 58080978 -63762878 + RMER19B LTR ERVK 171 510 -392 2 1028 2796 110 12 98 chr11 58080984 58081257 -63762599 + RLTR25A LTR ERVK 636 898 -205 2 1028 1187 124 27 0 chr11 58081257 58081442 -63762414 + B2_Mm1a SINE B2 1 190 -3 2 1028 2796 110 12 98 chr11 58081442 58081680 -63762176 + RLTR25A LTR ERVK 899 1103 0 2 1028 249 108 0 0 chr11 58081736 58081773 -63762083 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1028 627 14 0 0 chr11 58081806 58081878 -63761978 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2 1028 255 222 15 31 chr11 58082065 58082130 -63761726 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 2 1028 491 242 72 8 chr11 58082516 58082641 -63761215 + B1_Mur2 SINE Alu 4 136 -13 2 1028 468 0 0 0 chr11 58082642 58082694 -63761162 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1028 210 71 0 0 chr11 58082802 58082830 -63761026 + (TATG)n Simple_repeat Simple_repeat 4 31 0 2 1028 612 185 77 0 chr11 58082837 58082967 -63760889 - B2_Mm2 SINE B2 -55 140 1 2 1028 617 130 169 8 chr11 58083278 58083402 -63760454 - RMER19B LTR ERVK 0 902 759 2 1028 420 20 0 0 chr11 58083405 58083454 -63760402 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1028 1048 54 0 0 chr11 58083454 58083583 -63760273 - B1_Mus2 SINE Alu -10 137 9 2 1028 3781 149 40 20 chr11 58083521 58083687 -63760169 - RLTR25A LTR ERVK -433 670 511 2 1028 198 0 0 0 chr11 58083687 58083709 -63760147 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1028 3781 149 40 20 chr11 58083709 58084199 -63759657 - RLTR25A LTR ERVK -593 510 3 2 1028 750 294 81 0 chr11 58084630 58084827 -63759029 - B4 SINE B4 0 292 80 2 1028 437 278 42 90 chr11 58084832 58084998 -63758858 - RSINE1 SINE B4 -6 159 2 2 1028 420 281 10 0 chr11 58084998 58085092 -63758764 - B4 SINE B4 -197 95 1 2 1028 682 233 22 17 chr11 58085113 58085276 -63758580 - ID_B1 SINE B4 -46 246 85 2 1028 312 273 51 7 chr11 58085279 58085397 -63758459 + MER31B LTR ERV1 272 398 -87 2 1028 1587 6 0 0 chr11 58085533 58085713 -63758143 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1028 612 0 0 0 chr11 58085763 58085831 -63758025 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1028 210 188 40 40 chr11 58085834 58085863 -63757993 - B1_Mm SINE Alu -14 133 105 2 1028 596 177 128 8 chr11 58085863 58085988 -63757868 - B1_Mm SINE Alu -7 140 1 2 1028 210 188 40 40 chr11 58085988 58086008 -63757848 - B1_Mm SINE Alu -43 104 85 2 1028 232 198 124 38 chr11 58086008 58086113 -63757743 + L1MA9 LINE L1 5680 5793 -396 2 1028 250 265 19 38 chr11 58086113 58086219 -63757637 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 2 1028 367 312 114 67 chr11 58086220 58086622 -63757234 + L1MA9 LINE L1 5867 6287 -25 2 1028 1565 256 74 28 chr11 58086636 58087066 -63756790 + Lx8 LINE L1 6567 7016 -457 2 1028 655 292 133 12 chr11 58087085 58087431 -63756425 + Lx8 LINE L1 7084 7471 -2 2 1028 1195 49 0 7 chr11 58087445 58087588 -63756268 - B1_Mus2 SINE Alu -5 142 1 2 1028 347 229 10 114 chr11 58087619 58087821 -63756035 + RMER17C LTR ERVK 95 275 -135 2 1028 486 49 0 0 chr11 58088866 58088927 -63754929 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1028 405 311 26 104 chr11 58089665 58089693 -63754163 + B4A SINE B4 61 128 -164 2 1028 540 216 62 82 chr11 58089693 58089839 -63754017 + B1F2 SINE Alu 1 143 -6 2 1028 405 311 26 104 chr11 58089839 58089852 -63754004 + B4A SINE B4 129 229 -63 2 1028 800 204 57 6 chr11 58089852 58090029 -63753827 + B3A SINE B2 2 187 -11 2 1028 516 208 0 10 chr11 58091191 58091291 -63752565 - ID_B1 SINE B4 -4 220 122 2 1028 646 138 138 0 chr11 58091291 58091414 -63752442 - MTD LTR MaLR 0 419 280 2 1028 268 316 74 122 chr11 58091595 58091998 -63751858 + RMER10A LTR ERVL 29 412 -30 2 1028 1605 213 7 10 chr11 58092013 58092312 -63751544 - MTD LTR MaLR -121 298 1 2 1028 585 0 0 0 chr11 58092356 58092421 -63751435 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1028 347 357 98 40 chr11 58092427 58092701 -63751155 - B4A SINE B4 -2 290 1 2 1028 245 315 58 51 chr11 58092737 58092874 -63750982 - YREP_Mm Unknown Unknown -1489 323 186 2 1028 589 256 8 0 chr11 58092759 58092876 -63750980 + ID_B1 SINE B4 100 217 -7 2 1028 515 252 32 0 chr11 58093102 58093225 -63750631 - B1F SINE Alu -12 137 11 2 1028 348 295 38 23 chr11 58093709 58093841 -63750015 + B1F SINE Alu 11 144 -5 2 1028 203 246 0 34 chr11 58093851 58093910 -63749946 + GA-rich Low_complexity Low_complexity 2 58 0 2 1028 467 232 80 25 chr11 58094455 58094591 -63749265 - ID_B1 SINE B4 0 224 81 2 1028 262 327 81 17 chr11 58094593 58094767 -63749089 - L1MA5 LINE L1 -5 6295 6111 2 1028 437 282 0 49 chr11 58094767 58094890 -63748966 + PB1D10 SINE Alu 1 117 0 2 1028 593 246 20 27 chr11 58094887 58095033 -63748823 + ID_B1 SINE B4 80 224 0 2 1028 547 216 327 0 chr11 58095152 58095305 -63748551 - B3 SINE B2 -13 203 1 2 1028 505 196 82 0 chr11 58095317 58095414 -63748442 - B1_Mus2 SINE Alu 0 147 43 2 1028 243 0 0 0 chr11 58095415 58095442 -63748414 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1028 230 254 0 87 chr11 58095450 58095519 -63748337 + PB1D9 SINE Alu 57 119 -1 2 1028 1413 50 0 0 chr11 58097293 58097446 -63746410 + (TTC)n Simple_repeat Simple_repeat 1 153 0 2 1028 1620 0 0 0 chr11 58097446 58097626 -63746230 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1028 1413 50 0 0 chr11 58097626 58097652 -63746204 + (TTC)n Simple_repeat Simple_repeat 2 27 0 2 1028 422 219 9 0 chr11 58097652 58097757 -63746099 + CT-rich Low_complexity Low_complexity 1 106 0 2 1028 1098 234 23 87 chr11 58097761 58098070 -63745786 - Lx9 LINE L1 -454 7190 6902 2 1028 524 296 51 15 chr11 58098074 58098276 -63745580 - MLT1B LTR MaLR -251 216 1 2 1028 690 13 0 0 chr11 58098288 58098367 -63745489 + (TTTTC)n Simple_repeat Simple_repeat 2 80 0 2 1028 1453 62 17 0 chr11 58098369 58098546 -63745310 - B2_Mm2 SINE B2 -15 180 1 2 1028 1093 88 0 26 chr11 58098573 58098724 -63745132 - B1_Mus1 SINE Alu 0 148 2 2 1028 1710 72 5 5 chr11 58098753 58098977 -63744879 + L1_Mus1 LINE L1 6344 6567 0 2 1028 249 185 0 0 chr11 58098981 58099046 -63744810 + A-rich Low_complexity Low_complexity 2 66 0 2 1028 281 279 19 67 chr11 58099052 58099157 -63744699 - Lx8 LINE L1 -235 7238 7127 2 1028 269 304 143 14 chr11 58099146 58099286 -63744570 - Lx8 LINE L1 -1196 6277 6120 2 1028 320 239 81 118 chr11 58100486 58100647 -63743209 + HAL1-3A_ME LINE L1 2284 2438 -420 2 1028 235 222 0 24 chr11 58100647 58100730 -63743126 + GA-rich Low_complexity Low_complexity 1 81 0 2 1028 827 66 80 7 chr11 58102875 58103164 -63740692 + (CA)n Simple_repeat Simple_repeat 1 310 0 2 1028 204 245 19 0 chr11 58103386 58103439 -63740417 + GA-rich Low_complexity Low_complexity 3 56 0 2 1028 297 224 129 0 chr11 58103462 58103547 -63740309 - MER89 LTR ERV1 -40 519 424 2 1028 251 328 192 19 chr11 58103767 58103975 -63739881 - MER89 LTR ERV1 -144 415 172 2 1028 303 218 55 0 chr11 58105197 58105252 -63738604 + B1_Mur4 SINE Alu 27 84 -66 2 1028 594 0 0 0 chr11 58105253 58105319 -63738537 + (GAAAA)n Simple_repeat Simple_repeat 5 70 0 2 1028 1160 102 11 0 chr11 58105319 58105496 -63738360 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 2 1028 257 257 75 81 chr11 58105780 58105817 -63738039 + MT2B2 LTR ERVL 123 250 -334 2 1028 351 275 11 11 chr11 58105817 58105909 -63737947 + PB1D10 SINE Alu 3 94 -23 2 1028 207 0 0 0 chr11 58106002 58106025 -63737831 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1028 661 244 6 30 chr11 58106208 58106377 -63737479 + ID_B1 SINE B4 2 166 -58 2 1028 180 0 0 0 chr11 58107824 58107844 -63736012 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1028 1157 82 0 0 chr11 58107846 58107992 -63735864 - B1_Mus2 SINE Alu 0 147 2 2 1028 450 0 0 0 chr11 58108016 58108066 -63735790 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1028 380 309 16 8 chr11 58108093 58108220 -63735636 - RSINE1 SINE B4 -35 130 3 2 1028 1756 195 68 19 chr11 58108333 58108467 -63735389 - ORR1D1 LTR MaLR -1 378 237 2 1028 2676 122 73 11 chr11 58108467 58108906 -63734950 - RMER4A LTR ERVK 0 466 1 2 1028 1756 182 73 12 chr11 58108906 58109131 -63734725 - ORR1D1 LTR MaLR -138 236 2 2 1028 613 237 43 0 chr11 58109374 58109513 -63734343 + RSINE1 SINE B4 4 148 -17 2 1028 688 11 11 32 chr11 58109515 58109609 -63734247 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 1028 361 267 64 37 chr11 58109611 58109720 -63734136 + B3 SINE B2 103 214 -2 2 1028 643 204 30 0 chr11 58109737 58109869 -63733987 + B1_Mur1 SINE Alu 1 136 -13 2 1028 478 228 20 0 chr11 58110712 58110813 -63733043 + B1_Mur4 SINE Alu 2 104 -46 2 1028 245 298 10 0 chr11 58110812 58110916 -63732940 - RMER17C LTR ERVK -139 271 167 3 1028 347 278 41 57 chr11 58110904 58111026 -63732830 - LTR40c LTR ERVL -280 185 66 3 1028 286 275 142 0 chr11 58111167 58111287 -63732569 - MTE2a LTR MaLR -44 335 199 3 1028 468 240 138 8 chr11 58111279 58111409 -63732447 + B3A SINE B2 8 154 -44 3 1028 495 0 0 0 chr11 58111409 58111464 -63732392 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1028 765 226 48 0 chr11 58111469 58111599 -63732257 + B3 SINE B2 41 170 -46 3 1028 480 89 0 0 chr11 58111599 58111678 -63732178 + (CCTA)n Simple_repeat Simple_repeat 4 82 0 3 1028 767 226 48 0 chr11 58111678 58111715 -63732141 + B3 SINE B2 171 215 -1 3 1028 23 54 0 0 chr11 58111717 58111754 -63732102 + AT_rich Low_complexity Low_complexity 1 37 0 3 1028 352 325 24 18 chr11 58111773 58111946 -63731910 - MTE2a LTR MaLR -166 213 32 3 1028 709 265 142 9 chr11 58111949 58112181 -63731675 + Lx8 LINE L1 6334 6596 -877 3 1028 489 202 202 0 chr11 58112534 58112648 -63731208 - B1_Mur1 SINE Alu 0 149 13 3 1028 1044 92 35 0 chr11 58112648 58112789 -63731067 - B1_Mm SINE Alu 0 147 2 3 1028 277 292 74 23 chr11 58112811 58112986 -63730870 - L1_Mur3 LINE L1 -4233 1647 1464 3 1028 528 193 0 11 chr11 58113435 58113524 -63730332 - B1_Mur1 SINE Alu -26 123 36 3 1028 924 111 14 27 chr11 58113524 58113672 -63730184 + B1_Mm SINE Alu 2 147 0 3 1028 184 30 29 29 chr11 58113673 58113707 -63730149 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1028 658 95 224 0 chr11 58113710 58113826 -63730030 + B2_Mm1t SINE B2 27 168 -25 3 1028 1092 45 45 0 chr11 58113833 58113965 -63729891 + B1_Mus2 SINE Alu 1 138 -9 3 1028 237 223 355 14 chr11 58114310 58114451 -63729405 + B3A SINE B2 1 189 -9 3 1028 226 73 49 0 chr11 58115041 58115082 -63728774 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 1028 268 250 62 15 chr11 58115115 58115245 -63728611 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 3 1028 642 0 0 0 chr11 58115678 58115750 -63728106 - tRNA-Glu-GAG_ tRNA tRNA -3 72 1 3 1028 593 0 0 222 chr11 58115974 58116082 -63727774 - tRNA-Leu-TTG tRNA tRNA -2 84 1 3 1028 206 228 0 0 chr11 58116655 58116712 -63727144 + A-rich Low_complexity Low_complexity 4 60 0 3 1028 282 256 163 0 chr11 58116758 58116844 -63727012 + ID_B1 SINE B4 123 222 -2 3 1028 543 268 180 88 chr11 58116958 58117013 -63726843 - MER31B LTR ERV1 -3 463 389 3 1028 211 0 47 78 chr11 58117013 58117077 -63726779 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 3 1028 543 268 180 88 chr11 58117077 58117443 -63726413 - MER31B LTR ERV1 -78 388 3 3 1028 282 116 0 0 chr11 58117506 58117549 -63726307 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 3 1028 261 167 12 25 chr11 58117681 58117761 -63726095 + T-rich Low_complexity Low_complexity 2 80 0 3 1028 823 160 37 0 chr11 58117761 58117904 -63725952 - B1_Mur4 SINE Alu 0 150 3 3 1028 238 118 78 0 chr11 58117954 58118056 -63725800 + (TA)n Simple_repeat Simple_repeat 1 110 0 3 1028 676 267 5 79 chr11 58118056 58118233 -63725623 - B3A SINE B2 -2 196 34 3 1028 3216 51 15 0 chr11 58118233 58118623 -63725233 + MTA_Mm LTR MaLR 1 396 0 3 1028 676 267 5 79 chr11 58118623 58118648 -63725208 - B3A SINE B2 -165 33 9 3 1028 316 206 97 56 chr11 58118711 58118783 -63725073 - B1_Mur2 SINE Alu -30 119 45 3 1028 180 0 0 0 chr11 58118792 58118812 -63725044 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1028 1231 40 14 0 chr11 58118816 58118964 -63724892 - B1_Mur4 SINE Alu 0 150 1 3 1028 277 178 22 0 chr11 58118964 58119009 -63724847 - B1_Mus1 SINE Alu -93 55 10 3 1028 21 0 0 0 chr11 58119023 58119044 -63724812 + AT_rich Low_complexity Low_complexity 1 21 0 3 1028 500 283 19 50 chr11 58119057 58119217 -63724639 - RSINE1 SINE B4 -7 158 4 3 1028 275 336 64 21 chr11 58119236 58119376 -63724480 + MLT1D LTR MaLR 9 154 -351 3 1028 528 261 180 11 chr11 58119444 58119622 -63724234 + MLT1D LTR MaLR 277 484 -21 3 1028 564 210 90 25 chr11 58120098 58120220 -63723636 + ID_B1 SINE B4 95 224 0 3 1028 601 236 83 52 chr11 58121754 58121946 -63721910 + B3A SINE B2 1 198 0 3 1028 1505 58 15 25 chr11 58121990 58122186 -63721670 + B2_Mm2 SINE B2 2 195 0 3 1028 228 135 0 0 chr11 58123083 58123120 -63720736 + (GGA)n Simple_repeat Simple_repeat 1 37 0 3 1028 228 240 0 57 chr11 58124067 58124120 -63719736 + ID4 SINE ID 3 52 -31 3 1028 301 286 14 0 chr11 58124374 58124444 -63719412 + ID4 SINE ID 12 82 -1 3 1028 234 0 0 0 chr11 58124448 58124474 -63719382 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1028 396 132 0 0 chr11 58125643 58125726 -63718130 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1028 330 153 110 14 chr11 58128607 58128680 -63715176 + MTEb LTR MaLR 287 366 -13 3 1028 893 171 7 14 chr11 58131980 58132128 -63711728 - B1_Mur3 SINE Alu 0 149 3 3 1028 249 222 130 0 chr11 58132128 58132182 -63711674 - B1_Mur3 SINE Alu -87 62 2 3 1028 27 0 0 0 chr11 58132426 58132453 -63711403 + AT_rich Low_complexity Low_complexity 1 27 0 3 1028 1003 249 0 0 chr11 58132454 58132651 -63711205 - B3A SINE B2 -1 197 1 3 1028 248 157 0 56 chr11 58132655 58132709 -63711147 - ID_B1 SINE B4 -2 222 172 3 1028 502 219 0 45 chr11 58132661 58132771 -63711085 - PB1D9 SINE Alu -8 112 8 3 1028 225 200 25 0 chr11 58133628 58133668 -63710188 + ID4_ SINE ID 25 65 -18 3 1028 225 0 0 0 chr11 58133669 58133694 -63710162 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1028 597 263 169 9 chr11 58135114 58135333 -63708523 + RMER5 LTR ERV1 33 286 -248 3 1028 736 239 10 66 chr11 58135336 58135533 -63708323 + B3A SINE B2 2 187 -11 3 1028 601 249 97 44 chr11 58135824 58136051 -63707805 + RMER5 LTR ERV1 75 313 -221 3 1028 240 309 74 0 chr11 58136110 58136191 -63707665 + MIRc SINE MIR 38 124 -144 3 1028 22 35 0 0 chr11 58136716 58136745 -63707111 + GC_rich Low_complexity Low_complexity 1 29 0 3 1028 294 323 78 29 chr11 58137377 58137522 -63706334 + ID_B1 SINE B4 4 157 -135 3 1028 925 282 57 84 chr11 58137522 58137905 -63705951 + MTE2a LTR MaLR 2 374 -5 3 1028 1094 212 86 182 chr11 58138176 58138369 -63705487 + Charlie12 DNA MER1_type 389 562 -2311 3 1028 660 177 100 0 chr11 58138369 58138499 -63705357 - B1_Mur1 SINE Alu -5 144 2 3 1028 1094 212 86 182 chr11 58138499 58138731 -63705125 + Charlie12 DNA MER1_type 563 744 -2129 3 1028 1255 40 0 13 chr11 58138731 58138881 -63704975 + B1_Mus1 SINE Alu 1 148 0 3 1028 1094 212 86 182 chr11 58138881 58138897 -63704959 + Charlie12 DNA MER1_type 745 754 -2119 3 1028 482 319 31 0 chr11 58138897 58139057 -63704799 + RSINE1 SINE B4 1 165 0 3 1028 1094 212 86 182 chr11 58139057 58139276 -63704580 + Charlie12 DNA MER1_type 755 987 -1886 3 1028 1128 245 223 5 chr11 58139329 58139768 -63704088 + Charlie12 DNA MER1_type 2228 2762 -111 3 1028 1183 54 0 7 chr11 58139801 58139950 -63703906 - B1_Mus1 SINE Alu 0 148 1 3 1028 27 0 0 0 chr11 58140406 58140433 -63703423 + AT_rich Low_complexity Low_complexity 1 27 0 3 1028 589 211 125 0 chr11 58140436 58140564 -63703292 - B3 SINE B2 -34 182 39 3 1028 224 221 40 81 chr11 58140545 58140619 -63703237 - RSINE1 SINE B4 -87 78 8 3 1028 200 31 0 59 chr11 58140695 58140729 -63703127 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 3 1028 465 169 51 27 chr11 58140729 58140841 -63703015 + PB1D9 SINE Alu 10 119 -1 3 1028 911 257 24 14 chr11 58140872 58141085 -63702771 + B3 SINE B2 1 215 -1 3 1028 262 207 34 17 chr11 58141251 58141310 -63702546 - PB1D7 SINE Alu -56 64 5 3 1028 337 333 0 9 chr11 58141352 58141461 -63702395 - RSINE1 SINE B4 -54 111 4 3 1028 245 274 16 0 chr11 58141509 58141571 -63702285 - ID4_ SINE ID -16 67 5 3 1028 1352 278 28 58 chr11 58141614 58142045 -63701811 + MER67B LTR ERV1 1 418 -243 3 1028 781 294 116 50 chr11 58142018 58142383 -63701473 + MER31B LTR ERV1 15 417 -49 3 1028 948 132 172 45 chr11 58142383 58142581 -63701275 + URR1A DNA MER1_type 4 226 0 3 1028 781 294 116 50 chr11 58142581 58142638 -63701218 + MER31B LTR ERV1 418 465 -1 3 1028 245 217 56 67 chr11 58142638 58142727 -63701129 + MTB_Mm LTR MaLR 20 107 -300 3 1028 1683 249 41 88 chr11 58142697 58143211 -63700645 + RLTR19 LTR ERVK 10 499 0 3 1028 237 209 216 52 chr11 58143211 58143322 -63700534 + MER67B LTR ERV1 454 583 -78 3 1028 776 184 14 21 chr11 58145836 58145980 -63697876 - B1_Mur3 SINE Alu -5 144 2 3 1028 180 0 0 0 chr11 58146476 58146496 -63697360 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1028 631 259 15 20 chr11 58148007 58148165 -63695691 - ID_B1 SINE B4 -58 234 88 3 1028 327 255 139 0 chr11 58148760 58148863 -63694993 - B1F1 SINE Alu 0 117 2 3 1028 234 0 0 0 chr11 58148950 58148976 -63694880 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1028 828 197 0 0 chr11 58148986 58149118 -63694738 - B1_Mur1 SINE Alu -15 134 3 3 1028 204 40 0 0 chr11 58149183 58149208 -63694648 + (C)n Simple_repeat Simple_repeat 1 25 0 3 1028 1147 46 0 0 chr11 58149219 58149350 -63694506 - B1_Mus1 SINE Alu -16 132 2 3 1028 207 65 43 21 chr11 58149354 58149401 -63694455 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 3 1028 952 123 0 8 chr11 58149403 58149534 -63694322 - B1_Mur4 SINE Alu -3 147 18 3 1028 235 305 17 0 chr11 58149540 58149599 -63694257 + B1_Mus1 SINE Alu 4 63 -85 3 1028 762 237 30 56 chr11 58150157 58150354 -63693502 + B3A SINE B2 1 192 -6 3 1028 1028 214 15 15 chr11 58150649 58150848 -63693008 - B3 SINE B2 -17 199 1 3 1028 1362 232 82 31 chr11 58151588 58151979 -63691877 - MTD LTR MaLR 0 419 9 3 1028 779 215 30 37 chr11 58152133 58152297 -63691559 + RSINE1 SINE B4 3 165 0 3 1028 203 186 0 23 chr11 58152577 58152621 -63691235 + CT-rich Low_complexity Low_complexity 1 43 0 3 1028 820 175 7 7 chr11 58152622 58152766 -63691090 - B1_Mur2 SINE Alu -5 144 1 3 1028 192 40 0 0 chr11 58153281 58153306 -63690550 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1028 212 195 24 0 chr11 58153786 58153827 -63690029 + B3A SINE B2 1 42 -156 3 1028 1091 67 7 0 chr11 58153863 58154012 -63689844 + (TCCCC)n Simple_repeat Simple_repeat 2 151 0 4 1028 575 183 0 94 chr11 58154020 58154147 -63689709 - B1_Mur2 SINE Alu -34 115 1 4 1028 372 182 45 0 chr11 58154273 58154339 -63689517 - U2 snRNA snRNA -116 72 4 4 1028 2771 75 82 0 chr11 58155832 58156221 -63687635 - BGLII LTR ERVK 0 421 1 4 1028 3445 191 44 46 chr11 58156222 58157175 -63686681 - RMER3D-int LTR ERVK -1 2841 1891 4 1028 741 140 34 27 chr11 58157161 58157308 -63686548 - RMER3D-int LTR ERVK -1163 1679 1532 4 1028 2001 161 105 17 chr11 58157340 58157840 -63686016 - RMER3D-int LTR ERVK -1309 1533 1014 4 1028 652 120 43 0 chr11 58157838 58157862 -63685994 - RMER3D-int LTR ERVK -2232 610 586 4 1028 875 71 24 0 chr11 58157862 58157988 -63685868 + (TTTCC)n Simple_repeat Simple_repeat 2 130 0 4 1028 652 120 43 0 chr11 58157988 58158080 -63685776 - RMER3D-int LTR ERVK -2257 585 490 4 1028 550 77 152 11 chr11 58158477 58158569 -63685287 - BGLII LTR ERVK 0 421 317 4 1028 271 284 99 18 chr11 58161793 58161904 -63681952 + B1F2 SINE Alu 12 131 -18 4 1028 459 221 78 26 chr11 58164110 58164226 -63679630 + ID_B1 SINE B4 101 222 -2 4 1028 1226 101 37 5 chr11 58164229 58164418 -63679438 + B2_Mm2 SINE B2 1 195 0 4 1028 224 231 19 0 chr11 58164426 58164478 -63679378 + B2_Mm2 SINE B2 1 53 -142 4 1028 284 70 23 0 chr11 58164484 58164527 -63679329 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1028 946 135 0 14 chr11 58164644 58164787 -63679069 - B1_Mm SINE Alu -5 142 2 4 1028 2021 158 67 91 chr11 58165369 58165662 -63678194 - MTC LTR MaLR 0 421 104 4 1028 1184 106 56 6 chr11 58165662 58165842 -63678014 + B2_Mm2 SINE B2 4 192 -3 4 1028 2021 158 67 91 chr11 58165842 58165886 -63677970 - MTC LTR MaLR -318 103 82 4 1028 516 136 321 18 chr11 58165886 58165998 -63677858 - B1_Mur4 SINE Alu -2 148 3 4 1028 703 193 220 12 chr11 58166004 58166177 -63677679 - B3 SINE B2 -6 210 2 4 1028 2021 158 67 91 chr11 58166177 58166262 -63677594 - MTC LTR MaLR -340 81 1 4 1028 993 187 32 16 chr11 58166278 58166468 -63677388 - B3A SINE B2 -5 193 1 4 1028 1008 202 38 14 chr11 58167150 58167361 -63676495 - B3 SINE B2 0 216 1 4 1028 273 119 0 0 chr11 58167386 58167428 -63676428 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 4 1028 674 286 24 0 chr11 58167437 58167605 -63676251 - B3A SINE B2 -26 172 1 4 1028 402 21 0 0 chr11 58167748 58167795 -63676061 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1028 287 45 45 0 chr11 58168397 58168441 -63675415 + (TGGGGG)n Simple_repeat Simple_repeat 1 46 0 4 1028 245 376 66 27 chr11 58168583 58168766 -63675090 - L1M4b LINE L1 -7008 326 137 4 1028 558 0 0 0 chr11 58169523 58169585 -63674271 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1028 257 273 10 137 chr11 58169702 58169804 -63674052 - B4A SINE B4 -118 174 86 4 1028 1461 164 13 0 chr11 58169789 58170021 -63673835 - RLTR25A LTR ERVK -868 235 1 4 1028 390 258 11 11 chr11 58170148 58170242 -63673614 - MLT1A0 LTR MaLR -240 125 32 4 1028 186 103 0 0 chr11 58170532 58170561 -63673295 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 4 1028 606 204 18 90 chr11 58170561 58170728 -63673128 - B3A SINE B2 -1 197 43 4 1028 198 224 0 0 chr11 58170734 58170783 -63673073 + CT-rich Low_complexity Low_complexity 3 51 0 4 1028 348 331 90 0 chr11 58172337 58172482 -63671374 - MLT1I LTR MaLR 0 411 254 4 1028 479 282 89 0 chr11 58172506 58172630 -63671226 + B1_Mur1 SINE Alu 13 147 -2 4 1028 283 333 80 106 chr11 58172510 58172661 -63671195 + B4A SINE B4 102 248 -44 4 1028 226 286 13 25 chr11 58172662 58172741 -63671115 + GA-rich Low_complexity Low_complexity 2 79 0 4 1028 776 203 7 7 chr11 58172766 58172910 -63670946 + B1_Mus2 SINE Alu 2 145 -2 4 1028 246 260 54 14 chr11 58173501 58173575 -63670281 - MLT1I LTR MaLR -266 145 69 4 1028 882 93 78 0 chr11 58175077 58175206 -63668650 + B1_Mur4 SINE Alu 9 147 -3 4 1028 280 314 46 125 chr11 58175417 58175697 -63668159 - ORR1E LTR MaLR 0 359 102 4 1028 406 164 27 0 chr11 58176677 58176750 -63667106 - B2_Mm2 SINE B2 -74 121 47 4 1028 1224 107 28 0 chr11 58176762 58176939 -63666917 - B2_Mm2 SINE B2 -13 182 1 4 1028 269 140 18 0 chr11 58177313 58177370 -63666486 + CT-rich Low_complexity Low_complexity 1 58 0 4 1028 204 290 41 7 chr11 58178377 58178523 -63665333 + (CTGTG)n Simple_repeat Simple_repeat 1 151 0 4 1028 359 346 25 112 chr11 58178917 58179282 -63664574 - Lx8 LINE L1 -2 7471 7139 4 1028 406 164 27 0 chr11 58180316 58180389 -63663467 - B2_Mm2 SINE B2 -74 121 47 4 1028 1224 107 28 0 chr11 58180401 58180578 -63663278 - B2_Mm2 SINE B2 -13 182 1 4 1028 894 45 0 0 chr11 58180955 58181066 -63662790 + (TC)n Simple_repeat Simple_repeat 1 111 0 4 1028 243 224 0 17 chr11 58181070 58181120 -63662736 + CT-rich Low_complexity Low_complexity 12 60 0 4 1028 876 166 35 0 chr11 58181120 58181265 -63662591 - B1_Mur4 SINE Alu 0 150 1 4 1028 197 0 0 147 chr11 58181550 58181659 -63662197 + (CAGGG)n Simple_repeat Simple_repeat 3 95 0 4 1028 1450 159 141 83 chr11 58181788 58182151 -63661705 + ORR1C2 LTR MaLR 1 384 0 4 1028 486 0 0 0 chr11 58182220 58182274 -63661582 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1028 1928 231 90 14 chr11 58182587 58183078 -63660778 - MT2A LTR ERVL 0 533 6 4 1028 275 267 0 0 chr11 58183253 58183328 -63660528 - Lx8 LINE L1 -1567 5906 5832 4 1028 419 321 20 15 chr11 58183321 58183520 -63660336 + L1M2 LINE L1 5577 5776 -521 4 1028 1097 59 0 7 chr11 58183654 58183791 -63660065 + B1_Mus1 SINE Alu 1 136 -12 4 1028 1995 104 9 71 chr11 58183839 58184179 -63659677 - ORR1A4 LTR MaLR 0 329 11 4 1028 1234 301 101 23 chr11 58184729 58185687 -63658169 - L1MA5A LINE L1 -128 6169 5131 4 1028 311 274 0 12 chr11 58185690 58185775 -63658081 - U13 snRNA snRNA -24 84 1 4 1028 388 180 162 48 chr11 58185836 58185941 -63657915 + RSINE1 SINE B4 8 124 -41 4 1028 429 20 0 0 chr11 58185941 58185991 -63657865 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1028 611 298 92 43 chr11 58186063 58186330 -63657526 - L1MA5A LINE L1 -1177 4963 4680 4 1028 435 177 10 0 chr11 58186330 58186426 -63657430 + Lx2B LINE L1 6903 6999 -1 4 1028 611 298 92 43 chr11 58186426 58186628 -63657228 - L1MA5A LINE L1 -1461 4679 4471 4 1028 393 302 15 73 chr11 58186669 58186739 -63657117 - MTEa LTR MaLR 0 379 315 4 1028 1397 79 5 16 chr11 58186739 58186931 -63656925 + B2_Mm1a SINE B2 1 190 -3 4 1028 393 302 15 73 chr11 58186931 58186996 -63656860 - MTEa LTR MaLR -65 314 252 4 1028 8018 52 6 21 chr11 58187040 58188050 -63655806 + L1Md_F2 LINE L1 5588 6582 0 4 1028 228 109 161 18 chr11 58188079 58188135 -63655721 + L1M2 LINE L1 4989 5052 -1091 4 1028 468 0 0 0 chr11 58188154 58188206 -63655650 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1028 904 255 31 0 chr11 58188208 58188400 -63655456 - MTEa LTR MaLR -181 198 1 4 1028 530 196 78 104 chr11 58189154 58189308 -63654548 - B3A SINE B2 -3 195 46 4 1028 931 85 22 17 chr11 58190001 58190180 -63653676 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1028 208 164 164 0 chr11 58190540 58190595 -63653261 + MIRc SINE MIR 80 143 -125 4 1028 270 0 0 0 chr11 58191435 58191465 -63652391 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1028 659 12 12 0 chr11 58191465 58191545 -63652311 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1028 889 196 0 7 chr11 58191576 58191725 -63652131 - B1_Mur1 SINE Alu -1 148 1 4 1028 519 17 0 0 chr11 58191824 58191884 -63651972 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1028 190 247 11 147 chr11 58192120 58192215 -63651641 + MIRm SINE MIR 85 166 -110 4 1028 733 276 20 0 chr11 58192897 58193096 -63650760 + ID_B1 SINE B4 5 207 -17 4 1028 948 178 0 0 chr11 58194849 58195029 -63648827 + CT-rich Low_complexity Low_complexity 1 180 0 4 1028 1436 34 6 0 chr11 58195037 58195215 -63648641 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 4 1028 188 67 33 0 chr11 58195215 58195245 -63648611 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 4 1028 1310 75 30 65 chr11 58195245 58195445 -63648411 - B2_Mm2 SINE B2 -1 194 2 4 1029 207 88 0 0 chr11 58196711 58196745 -63647111 + (TTTTTG)n Simple_repeat Simple_repeat 5 38 0 4 1029 807 253 131 17 chr11 58196849 58197086 -63646770 + B4A SINE B4 1 264 -28 4 1029 258 116 0 0 chr11 58197159 58197202 -63646654 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1029 310 306 0 0 chr11 58197202 58197274 -63646582 - ID4_ SINE ID -10 73 2 4 1029 248 227 29 57 chr11 58197279 58197349 -63646507 + MER3 DNA MER1_type 138 205 -4 4 1029 432 287 42 48 chr11 58197548 58197713 -63646143 + RMER30 DNA MER1_type 8 171 -31 4 1029 927 117 0 35 chr11 58197806 58197948 -63645908 - B1_Mur2 SINE Alu -2 147 11 4 1029 608 250 6 59 chr11 58197948 58197976 -63645880 - ID_B1 SINE B4 -1 223 63 4 1029 589 250 23 0 chr11 58198573 58198705 -63645151 - ID_B1 SINE B4 -6 218 84 4 1029 322 283 61 9 chr11 58198711 58198825 -63645031 - Charlie1b DNA MER1_type -34 489 370 4 1029 365 116 28 30 chr11 58198807 58198910 -63644946 + B1F SINE Alu 16 175 0 4 1029 506 239 21 19 chr11 58198967 58199131 -63644725 - B3 SINE B2 -29 166 2 4 1029 800 37 0 18 chr11 58199186 58199296 -63644560 + L1_Mus1 LINE L1 6460 6567 0 4 1029 733 255 42 42 chr11 58199312 58199529 -63644327 - Charlie1b DNA MER1_type -300 223 7 4 1029 449 170 20 60 chr11 58199596 58199696 -63644160 - URR1B DNA MER1_type -60 165 70 4 1029 300 27 0 0 chr11 58199733 58199770 -63644086 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 4 1029 189 0 0 0 chr11 58200667 58200688 -63643168 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1029 652 62 0 0 chr11 58200693 58200774 -63643082 - B1_Mus2 SINE Alu -21 126 46 4 1029 311 169 96 27 chr11 58200715 58200788 -63643068 - RLTR25B LTR ERVK -519 509 432 4 1029 1702 16 0 0 chr11 58201395 58201582 -63642274 - B2_Mm1a SINE B2 -5 188 2 4 1029 251 273 39 0 chr11 58201709 58201786 -63642070 - L1MC1 LINE L1 -154 6179 6100 4 1029 217 234 16 0 chr11 58201939 58202003 -63641853 + CT-rich Low_complexity Low_complexity 1 65 0 4 1029 589 99 0 0 chr11 58202111 58202192 -63641664 - B1_Mm SINE Alu 0 147 67 5 1029 681 123 0 0 chr11 58202233 58202339 -63641517 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 5 1029 636 63 10 10 chr11 58202340 58202436 -63641420 - L1_Mur1 LINE L1 -1279 4607 4512 5 1029 232 316 20 20 chr11 58203050 58203125 -63640731 + polypyrimidine Low_complexity Low_complexity 26 101 0 5 1029 449 252 54 9 chr11 58203125 58203237 -63640619 - PB1D10 SINE Alu 0 117 1 5 1029 232 316 20 20 chr11 58203237 58203261 -63640595 + polypyrimidine Low_complexity Low_complexity 2 25 0 5 1029 776 244 20 40 chr11 58205869 58205897 -63637959 - B3A SINE B2 0 198 176 5 1029 813 49 0 0 chr11 58205897 58205999 -63637857 + (TATG)n Simple_repeat Simple_repeat 1 102 0 5 1029 776 244 20 40 chr11 58205999 58206171 -63637685 - B3A SINE B2 -23 175 2 5 1029 870 168 0 0 chr11 58207197 58207448 -63636408 + (CA)n Simple_repeat Simple_repeat 1 251 0 5 1029 390 42 0 0 chr11 58207452 58207500 -63636356 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1029 1026 105 0 0 chr11 58207500 58207672 -63636184 + (CA)n Simple_repeat Simple_repeat 2 173 0 5 1029 949 267 41 96 chr11 58207674 58208043 -63635813 - MTE2a LTR MaLR -57 362 3 5 1029 1102 69 27 20 chr11 58208774 58208921 -63634935 + B1_Mus1 SINE Alu 1 148 0 5 1029 225 0 0 0 chr11 58208921 58208946 -63634910 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1029 537 203 16 48 chr11 58208987 58209111 -63634745 + PB1 SINE Alu 4 123 -4 5 1029 221 0 0 33 chr11 58209111 58209141 -63634715 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1029 429 297 8 17 chr11 58210020 58210140 -63633716 - B3 SINE B2 -18 198 80 5 1029 384 313 105 26 chr11 58210282 58210548 -63633308 - RLTR14-int LTR ERV1 -4990 327 41 5 1029 1116 236 101 23 chr11 58210613 58210921 -63632935 - RLTR14 LTR ERV1 -44 338 7 5 1029 666 289 73 94 chr11 58210943 58211176 -63632680 - MTE2a-int LTR MaLR -307 1273 1046 5 1029 647 288 38 72 chr11 58211166 58211302 -63632554 - MTE2a-int LTR MaLR -662 596 452 5 1029 642 13 0 0 chr11 58211302 58211377 -63632479 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1029 734 303 33 61 chr11 58211377 58211788 -63632068 - MTE2a-int LTR MaLR -807 451 2 5 1029 1290 195 86 146 chr11 58211794 58212191 -63631665 - MTE2a LTR MaLR -6 373 1 5 1029 2671 159 30 35 chr11 58212276 58212785 -63631071 - RLTR19C LTR ERVK 0 506 1 5 1029 285 230 187 60 chr11 58212873 58213007 -63630849 - L1MC4a LINE L1 -280 7602 7452 5 1029 189 0 0 0 chr11 58213240 58213261 -63630595 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1029 390 154 21 21 chr11 58213262 58213355 -63630501 + G-rich Low_complexity Low_complexity 6 98 0 5 1029 679 249 42 0 chr11 58213744 58213909 -63629947 + RCHARR1 DNA MER1_type 628 799 -175 5 1029 577 270 17 12 chr11 58214378 58214540 -63629316 + B3A SINE B2 1 156 -37 5 1029 450 0 0 0 chr11 58214540 58214590 -63629266 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1029 310 286 68 84 chr11 58214590 58214618 -63629238 + B2_Mm1a SINE B2 157 187 -6 5 1029 236 245 18 26 chr11 58215168 58215281 -63628575 + CT-rich Low_complexity Low_complexity 60 171 0 5 1029 603 0 0 0 chr11 58215318 58215385 -63628471 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1029 299 337 103 37 chr11 58215465 58215736 -63628120 - L1MC4 LINE L1 -5802 413 125 5 1029 488 261 103 1 chr11 58216213 58216363 -63627493 - ID_B1 SINE B4 -58 234 72 5 1029 340 306 75 0 chr11 58216502 58216636 -63627220 - MER20 DNA MER1_type -8 211 68 5 1029 1574 233 55 3 chr11 58216695 58217061 -63626795 - MTD LTR MaLR -14 405 29 5 1029 210 208 36 143 chr11 58217111 58217195 -63626661 + L3 LINE CR1 733 807 -3682 5 1029 310 294 29 0 chr11 58217220 58217322 -63626534 - RMER15 LTR ERVL -17 558 454 5 1029 243 0 0 0 chr11 58217497 58217524 -63626332 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1029 1146 36 0 0 chr11 58217524 58217662 -63626194 + (GA)n Simple_repeat Simple_repeat 1 139 0 5 1029 264 293 110 10 chr11 58217673 58217773 -63626083 - B4 SINE B4 -182 110 1 5 1029 226 236 36 0 chr11 58218027 58218082 -63625774 - L1MB1 LINE L1 -5 6163 6107 5 1029 281 276 13 0 chr11 58218136 58218212 -63625644 + L1M3 LINE L1 5651 5727 -462 5 1029 396 219 97 85 chr11 58218212 58218377 -63625479 - RMER15 LTR ERVL 0 575 409 5 1029 938 118 35 0 chr11 58218378 58218522 -63625334 - URR1A DNA MER1_type 0 226 78 5 1029 585 301 95 10 chr11 58218614 58218909 -63624947 + L1M2 LINE L1 4528 4847 -1296 5 1029 1696 180 11 47 chr11 58218967 58219319 -63624537 - ORR1C1 LTR MaLR -78 300 2 5 1029 575 296 63 104 chr11 58219321 58219381 -63624475 + L1MA4 LINE L1 4876 4917 -930 5 1029 324 0 0 0 chr11 58219381 58219417 -63624439 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1029 575 296 63 104 chr11 58219417 58219546 -63624310 + L1MA4 LINE L1 4918 5044 -803 5 1029 186 43 0 0 chr11 58219546 58219569 -63624287 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1029 575 296 63 104 chr11 58219569 58219685 -63624171 + L1MA4 LINE L1 5045 5168 -679 5 1029 1413 48 62 5 chr11 58219685 58219893 -63623963 + L1_Mus3 LINE L1 6412 6631 -7 5 1029 674 296 63 104 chr11 58219893 58220025 -63623831 + L1MA4 LINE L1 5169 5363 -937 5 1029 3111 39 3 0 chr11 58220025 58220381 -63623475 - IAPEY2_LTR LTR ERVK 0 357 1 5 1029 674 326 58 65 chr11 58220381 58220887 -63622969 + L1MA4 LINE L1 5364 5863 -437 5 1029 227 292 131 9 chr11 58221250 58221357 -63622499 - MER57C2 LTR ERV1 -314 120 1 5 1029 387 0 0 0 chr11 58222091 58222134 -63621722 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1029 342 235 0 0 chr11 58222134 58222202 -63621654 - B1F1 SINE Alu -9 140 73 5 1029 240 35 0 0 chr11 58222589 58222618 -63621238 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1029 1156 249 57 123 chr11 58222784 58223328 -63620528 - RLTR19-int LTR ERVK -1763 4374 3867 5 1029 407 195 9 0 chr11 58223336 58223449 -63620407 + (TA)n Simple_repeat Simple_repeat 1 114 0 5 1029 596 231 82 78 chr11 58223496 58223576 -63620280 - RLTR19-int LTR ERVK -2344 3793 3696 5 1029 297 0 0 0 chr11 58223576 58223609 -63620247 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1029 596 231 82 78 chr11 58223609 58223796 -63620060 - RLTR19-int LTR ERVK -2442 3695 3526 5 1029 232 225 0 0 chr11 58224430 58224470 -63619386 + (TCG)n Simple_repeat Simple_repeat 2 41 0 5 1029 537 156 0 0 chr11 58224477 58224573 -63619283 + CT-rich Low_complexity Low_complexity 3 98 0 5 1029 343 129 14 14 chr11 58225766 58225799 -63618057 + polypyrimidine Low_complexity Low_complexity 40 73 0 5 1029 1307 72 0 6 chr11 58225799 58225980 -63617876 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1029 343 129 14 14 chr11 58225980 58226017 -63617839 + polypyrimidine Low_complexity Low_complexity 4 39 0 5 1029 646 94 0 10 chr11 58226017 58226114 -63617742 - B1_Mus2 SINE Alu 0 147 52 5 1029 1318 211 112 67 chr11 58226094 58226167 -63617689 + RCHARR1 DNA MER1_type 256 328 -646 5 1029 1302 73 79 0 chr11 58226167 58226345 -63617511 - B2_Mm1t SINE B2 0 193 2 5 1029 1318 211 112 67 chr11 58226345 58226719 -63617137 + RCHARR1 DNA MER1_type 329 723 -251 5 1029 2099 169 29 0 chr11 58226759 58227102 -63616754 + ORR1C1 LTR MaLR 1 353 -25 5 1029 556 324 48 59 chr11 58227108 58227380 -63616476 - B4 SINE B4 -22 270 2 5 1029 405 0 0 0 chr11 58229280 58229325 -63614531 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1029 2712 177 13 4 chr11 58229325 58229790 -63614066 - RLTR20B3 LTR ERVK -108 469 1 5 1029 698 317 110 9 chr11 58229822 58230268 -63613588 - L1MA4 LINE L1 -369 5931 5441 5 1029 482 245 72 13 chr11 58230948 58231101 -63612755 - MLT1B LTR MaLR -72 318 157 5 1029 514 109 22 0 chr11 58231734 58231826 -63612030 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 1029 567 254 0 0 chr11 58231845 58231959 -63611897 - B1_Mur1 SINE Alu -23 126 13 5 1029 3146 75 2 2 chr11 58233187 58233587 -63610269 - MTB LTR MaLR 0 400 1 5 1029 810 235 80 0 chr11 58235291 58235491 -63608365 + B3 SINE B2 1 216 0 5 1029 228 254 134 0 chr11 58236000 58236067 -63607789 - ID4 SINE ID 0 83 8 5 1029 475 201 21 52 chr11 58236697 58236822 -63607034 - PB1 SINE Alu -2 125 4 5 1029 611 117 17 0 chr11 58236833 58236953 -63606903 + (TCTG)n Simple_repeat Simple_repeat 2 123 0 5 1029 358 338 135 77 chr11 58237499 58238016 -63605840 - MLT1F LTR MaLR -1 547 1 5 1029 253 308 119 8 chr11 58239058 58239176 -63604680 - L2 LINE L2 -757 2662 2532 5 1029 516 126 0 0 chr11 58239552 58239639 -63604217 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 1029 368 243 279 0 chr11 58239658 58239769 -63604087 - B3A SINE B2 -56 142 1 5 1029 427 310 49 7 chr11 58240023 58240166 -63603690 + B1F1 SINE Alu 1 149 0 5 1029 1682 198 43 5 chr11 58241396 58241740 -63602116 - RMER12 LTR ERVK -1503 345 1 5 1029 586 249 25 85 chr11 58241743 58242089 -63601767 + RMER1B Other Other 713 1062 -4 5 1029 327 222 33 0 chr11 58242076 58242166 -63601690 - L1_Mur3 LINE L1 -4324 1556 1464 5 1029 464 170 20 0 chr11 58242910 58243010 -63600846 + GA-rich Low_complexity Low_complexity 2 103 0 5 1029 499 314 108 0 chr11 58243614 58243808 -63600048 - ID_B1 SINE B4 -6 218 4 5 1029 530 114 0 11 chr11 58243963 58244052 -63599804 + (CATA)n Simple_repeat Simple_repeat 2 89 0 5 1029 350 289 29 7 chr11 58244064 58244200 -63599656 - L1MA6 LINE L1 -12 6288 6150 5 1029 485 16 16 0 chr11 58244840 58244902 -63598954 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1029 305 100 20 0 chr11 58247852 58247902 -63595954 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 5 1029 328 299 93 20 chr11 58248525 58248675 -63595181 - ID_B1 SINE B4 -58 166 6 5 1029 306 312 0 24 chr11 58249814 58249896 -63593960 + L1MEg LINE L1 1855 1934 -4150 5 1029 326 307 56 28 chr11 58250337 58250481 -63593375 - MLT1F1 LTR MaLR -7 562 415 5 1029 699 24 0 0 chr11 58250618 58250703 -63593153 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 1029 4145 242 53 78 chr11 58251164 58252519 -63591337 - RMER12 LTR ERVK 0 1322 1 5 1029 22 0 0 0 chr11 58253823 58253845 -63590011 + AT_rich Low_complexity Low_complexity 1 22 0 5 1029 390 221 63 0 chr11 58253850 58253945 -63589911 - B1_Mur1 SINE Alu 0 149 49 5 1029 744 277 113 9 chr11 58253945 58254167 -63589689 - MTEa LTR MaLR -132 247 3 5 1029 1588 159 165 6 chr11 58254300 58254622 -63589234 + ORR1D1 LTR MaLR 1 373 -1 5 1029 304 299 92 0 chr11 58254650 58254737 -63589119 - MLT1F1 LTR MaLR -213 177 83 5 1029 1272 78 0 6 chr11 58254738 58254906 -63588950 + B2_Mm2 SINE B2 2 168 -27 5 1029 234 0 0 0 chr11 58254907 58254933 -63588923 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1029 1923 193 60 10 chr11 58254936 58255319 -63588537 + MTD LTR MaLR 18 419 0 6 1029 234 105 0 0 chr11 58255747 58255785 -63588071 + (TGG)n Simple_repeat Simple_repeat 2 39 0 6 1029 633 27 0 0 chr11 58255854 58255929 -63587927 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 6 1029 540 258 15 38 chr11 58255938 58256071 -63587785 - B4A SINE B4 -158 134 5 6 1029 523 250 7 14 chr11 58256083 58256221 -63587635 + Lx8 LINE L1 7118 7254 -219 6 1029 460 275 182 14 chr11 58256436 58256650 -63587206 + Lx8 LINE L1 7218 7467 -6 6 1029 623 167 0 53 chr11 58256782 58256896 -63586960 + B1_Mur1 SINE Alu 42 149 0 6 1029 378 246 22 90 chr11 58257377 58257511 -63586345 + B3A SINE B2 5 129 -69 6 1029 256 288 102 0 chr11 58257574 58257692 -63586164 + B3A SINE B2 45 174 -24 6 1029 438 190 70 0 chr11 58257683 58257783 -63586073 - Charlie5 DNA MER1_type -688 1936 1830 6 1029 2111 137 188 40 chr11 58257982 58258477 -63585379 + RLTR31A_Mm LTR ERVK 1 568 -16 6 1029 481 162 91 45 chr11 58259010 58259120 -63584736 - URR1B DNA MER1_type -1 224 110 6 1029 370 321 57 82 chr11 58259301 58259545 -63584311 + RMER15 LTR ERVL 292 573 -2 6 1029 185 273 136 27 chr11 58260045 58260192 -63583664 + L2b LINE L2 2978 3140 -235 6 1029 396 0 0 0 chr11 58260254 58260298 -63583558 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1029 414 0 0 0 chr11 58260298 58260343 -63583513 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1029 2473 174 11 62 chr11 58261667 58262211 -63581645 + L1VL2 LINE L1 176 652 -5766 6 1029 11686 78 12 8 chr11 58262194 58263839 -63580017 + MusHAL1 LINE L1 430 2080 -632 6 1029 27 29 0 0 chr11 58263839 58263873 -63579983 + AT_rich Low_complexity Low_complexity 1 34 0 6 1029 414 0 0 0 chr11 58263962 58264008 -63579848 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1029 206 231 21 42 chr11 58264238 58264333 -63579523 + A-rich Low_complexity Low_complexity 5 97 0 6 1029 1474 174 22 125 chr11 58264832 58265199 -63578657 + ORR1A4 LTR MaLR 1 329 0 6 1029 938 188 105 0 chr11 58265641 58265822 -63578034 + B3 SINE B2 3 202 -14 6 1029 450 0 0 0 chr11 58266855 58266905 -63576951 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1029 21 0 0 0 chr11 58267007 58267028 -63576828 + GC_rich Low_complexity Low_complexity 1 21 0 6 1029 463 239 10 1 chr11 58267077 58267188 -63576668 + L1MA6 LINE L1 5730 5849 -451 6 1029 405 0 0 0 chr11 58267522 58267567 -63576289 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1029 441 30 29 15 chr11 58270092 58270160 -63573696 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1029 1053 87 0 80 chr11 58270162 58270324 -63573532 - B2_Mm2 SINE B2 -46 149 1 6 1029 478 275 91 7 chr11 58270741 58270884 -63572972 + MER74B LTR ERVL 460 614 -8 6 1029 464 346 42 5 chr11 58271069 58271261 -63572595 - MER20 DNA MER1_type -5 214 16 6 1029 198 0 0 0 chr11 58271816 58271838 -63572018 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1029 351 0 0 0 chr11 58272223 58272262 -63571594 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1029 275 0 29 0 chr11 58272274 58272309 -63571547 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1029 180 395 9 17 chr11 58273212 58273328 -63570528 - MER5B DNA MER1_type -19 159 45 6 1029 337 303 135 26 chr11 58273422 58273578 -63570278 + MER5A DNA MER1_type 17 189 0 6 1029 325 335 38 31 chr11 58273590 58273750 -63570106 + MER20 DNA MER1_type 6 166 -53 6 1029 1013 246 38 35 chr11 58273988 58274278 -63569578 - B4 SINE B4 0 292 2 6 1029 495 0 0 0 chr11 58275573 58275628 -63568228 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1029 843 10 0 0 chr11 58275628 58275723 -63568133 + (GA)n Simple_repeat Simple_repeat 2 97 0 6 1029 186 103 0 0 chr11 58275976 58276005 -63567851 + (TATG)n Simple_repeat Simple_repeat 3 31 0 6 1029 635 154 120 0 chr11 58276006 58276123 -63567733 - B1_Mus2 SINE Alu -1 146 16 6 1029 371 20 0 0 chr11 58276125 58276174 -63567682 + L1_Mus2 LINE L1 6517 6565 -1 6 1029 207 0 0 0 chr11 58276216 58276239 -63567617 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1029 1198 54 7 0 chr11 58276240 58276388 -63567468 - B2_Mm2 SINE B2 -46 149 1 6 1029 767 285 6 22 chr11 58276827 58277010 -63566846 - ID_B1 SINE B4 -28 196 17 6 1029 1171 293 14 0 chr11 58277784 58278067 -63565789 + B4 SINE B4 2 288 -4 6 1029 243 284 0 15 chr11 58278072 58278140 -63565716 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1029 5587 42 0 0 chr11 58278462 58279125 -63564731 - L1Md_A LINE L1 -1 6581 5919 6 1029 231 270 94 31 chr11 58281927 58282118 -63561738 - L1MA7 LINE L1 -22 6269 6067 6 1029 477 0 0 0 chr11 58282185 58282238 -63561618 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 6 1029 548 229 76 28 chr11 58282253 58282397 -63561459 - RSINE1 SINE B4 0 165 15 6 1029 41729 10 3 0 chr11 58282458 58289008 -63554848 - L1Md_A LINE L1 0 6582 15 6 1029 577 285 72 23 chr11 58289072 58289334 -63554522 + MTEa LTR MaLR 105 379 0 6 1029 468 0 0 0 chr11 58289877 58289929 -63553927 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1029 522 70 0 0 chr11 58289929 58290000 -63553856 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 1029 410 178 302 20 chr11 58290574 58290723 -63553133 - Lx9 LINE L1 -526 7118 6928 6 1029 315 231 21 74 chr11 58290723 58290829 -63553027 - PB1D9 SINE Alu -43 106 6 6 1029 261 322 22 22 chr11 58290747 58290839 -63553017 - B4A SINE B4 -121 171 80 6 1029 530 239 104 0 chr11 58292101 58292235 -63551621 + B3A SINE B2 9 156 -42 6 1029 420 20 0 0 chr11 58292238 58292287 -63551569 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1029 456 342 67 17 chr11 58295318 58295556 -63548300 - Lx8 LINE L1 -57 7416 7167 6 1029 273 276 0 26 chr11 58297337 58297415 -63546441 - L1M2 LINE L1 -881 5416 5341 6 1029 626 231 0 0 chr11 58297422 58297556 -63546300 + MTE2b LTR MaLR 194 327 -52 6 1029 1361 284 122 30 chr11 58297583 58298386 -63545470 - L1M2 LINE L1 -831 5312 4436 6 1029 254 95 24 0 chr11 58298503 58298545 -63545311 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 6 1029 425 66 16 0 chr11 58298667 58298728 -63545128 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 6 1029 470 318 85 31 chr11 58299069 58299482 -63544374 + MLT1F-int LTR MaLR 648 1082 -407 6 1029 496 330 124 25 chr11 58299742 58300025 -63543831 + MER74A LTR ERVL 192 502 -56 6 1029 564 250 0 8 chr11 58300083 58300216 -63543640 - ID_B1 SINE B4 -7 217 86 6 1029 333 262 85 69 chr11 58300735 58300932 -63542924 - L1MC2 LINE L1 -131 6048 5851 6 1029 2849 157 17 0 chr11 58300946 58301412 -63542444 + Lx2B LINE L1 6523 6996 -4 6 1029 875 200 71 5 chr11 58305208 58305404 -63538452 - B3 SINE B2 -7 209 1 6 1029 3212 200 25 46 chr11 58306526 58306944 -63536912 + L1_Mur3 LINE L1 863 1271 -6457 6 1029 970 136 41 66 chr11 58306944 58307141 -63536715 + B2_Mm2 SINE B2 2 193 -2 6 1029 3212 159 62 33 chr11 58307141 58307436 -63536420 + L1_Mur3 LINE L1 1272 1598 -4282 6 1029 1074 100 0 0 chr11 58307436 58307576 -63536280 + B1_Mus1 SINE Alu 1 140 -8 6 1029 468 81 0 0 chr11 58307576 58307650 -63536206 + (CCAA)n Simple_repeat Simple_repeat 2 75 0 6 1029 3212 159 62 33 chr11 58307650 58307980 -63535876 + L1_Mur3 LINE L1 1599 1919 -3961 6 1029 4345 167 48 21 chr11 58307967 58308885 -63534971 + L1_Mur3 LINE L1 3185 4127 -1753 6 1029 3491 95 52 16 chr11 58308866 58309380 -63534476 + Lx3_Mus LINE L1 6457 6989 -20 6 1029 408 40 0 0 chr11 58309380 58309430 -63534426 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 6 1029 2911 139 24 22 chr11 58309430 58309591 -63534265 + L1_Mur3 LINE L1 4114 4274 -1606 6 1029 288 0 0 0 chr11 58309591 58309623 -63534233 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1029 2911 139 24 22 chr11 58309623 58309968 -63533888 + L1_Mur3 LINE L1 4275 4619 -1261 6 1029 322 204 167 0 chr11 58309985 58310093 -63533763 + RLTR15 LTR ERVK 14 139 -220 6 1029 3223 140 31 32 chr11 58310106 58310831 -63533025 + RLTR22_Mur LTR ERVK 1 805 -1043 6 1029 4054 50 0 16 chr11 58310917 58311424 -63532432 - L1Md_F2 LINE L1 0 6582 6084 6 1029 924 193 42 25 chr11 58311557 58311796 -63532060 + RLTR22_Mur LTR ERVK 1601 1843 -5 6 1029 255 272 112 28 chr11 58311824 58312002 -63531854 + RLTR15 LTR ERVK 151 343 -16 6 1029 214 91 43 43 chr11 58312129 58312175 -63531681 + (GGGTG)n Simple_repeat Simple_repeat 4 49 0 6 1029 387 358 0 0 chr11 58313037 58313188 -63530668 + MYSERV-int LTR ERVK 761 911 -8048 6 1029 2580 244 98 39 chr11 58313188 58314434 -63529422 + MYSERV-int LTR ERVK 3989 5082 -1468 6 1029 467 233 125 13 chr11 58314438 58314590 -63529266 + RMER5 LTR ERV1 354 522 -12 6 1029 198 191 0 0 chr11 58316750 58316792 -63527064 + (ATG)n Simple_repeat Simple_repeat 3 44 0 6 1029 297 128 0 0 chr11 58316883 58316930 -63526926 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1029 229 254 15 0 chr11 58319060 58319127 -63524729 + GA-rich Low_complexity Low_complexity 1 68 0 6 1029 326 325 39 39 chr11 58319184 58319312 -63524544 - Lx8 LINE L1 -209 7264 7137 6 1029 5524 43 0 0 chr11 58319374 58320025 -63523831 - L1Md_T LINE L1 -2 6580 5930 6 1029 7083 20 5 0 chr11 58320027 58320875 -63522981 + L1Md_T LINE L1 5074 5925 -657 6 1029 236 77 0 25 chr11 58321258 58321298 -63522558 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 6 1029 246 178 19 31 chr11 58323095 58323157 -63520699 + B1F SINE Alu 5 64 -56 6 1029 207 139 0 0 chr11 58323175 58323211 -63520645 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1029 912 133 22 0 chr11 58323289 58323424 -63520432 + B1_Mur3 SINE Alu 5 142 -7 6 1029 608 46 35 35 chr11 58323923 58324036 -63519820 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 6 1029 953 124 0 0 chr11 58324377 58324542 -63519314 - L1_Mur2 LINE L1 -2236 3641 3477 6 128 35412 63 7 2 chr11 58324555 58330687 -63513169 - L1Md_F2 LINE L1 -11 6571 409 6 1030 7567 86 7 1 chr11 58330691 58332010 -63511846 - L1_Mus2 LINE L1 0 6566 5244 6 1030 186 43 0 0 chr11 58332010 58332033 -63511823 + (TA)n Simple_repeat Simple_repeat 2 24 0 6 1030 4682 111 16 0 chr11 58332033 58332077 -63511779 - L1_Mus2 LINE L1 -640 5243 5192 6 1030 2548 68 7 149 chr11 58332077 58332527 -63511329 + RLTR10 LTR ERVK 1 386 -4 7 1030 13813 31 71 92 chr11 58332535 58334560 -63509296 + RLTR10-int LTR ERVK 3 1984 -3 7 1030 2799 60 2 148 chr11 58334562 58335014 -63508842 + RLTR10 LTR ERVK 1 386 -4 7 1030 2528 108 23 179 chr11 58335173 58335736 -63508120 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1030 26098 123 5 3 chr11 58335736 58340198 -63503658 - L1_Mus2 LINE L1 -687 5196 725 6 1030 431 252 44 7 chr11 58340206 58340342 -63503514 - L1_Mus2 LINE L1 -5813 803 663 6 1030 423 227 31 170 chr11 58340415 58340574 -63503282 - L1VL1 LINE L1 -6065 357 221 7 1030 1115 179 127 66 chr11 58340577 58340596 -63503260 - MYSERV-int LTR ERVK -768 8191 8173 7 1030 480 77 0 0 chr11 58340596 58340661 -63503195 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 7 1030 1127 179 127 66 chr11 58340661 58341018 -63502838 - MYSERV-int LTR ERVK -847 5703 5335 7 1030 416 279 23 109 chr11 58341018 58341246 -63502610 - RMER4A LTR ERVK -29 556 239 7 1030 266 204 64 109 chr11 58341263 58341373 -63502483 - MYSERV-int LTR ERVK -463 5317 5213 7 1030 859 312 95 25 chr11 58341504 58341935 -63501921 + RMER5 LTR ERV1 50 510 -24 7 1030 31 0 0 0 chr11 58343900 58343931 -63499925 + AT_rich Low_complexity Low_complexity 1 31 0 7 1030 240 200 0 0 chr11 58344156 58344211 -63499645 + (ATG)n Simple_repeat Simple_repeat 2 56 0 7 1030 1226 55 14 0 chr11 58344803 58344949 -63498907 + B1_Mus1 SINE Alu 1 148 0 7 1030 518 79 13 0 chr11 58346621 58346697 -63497159 + (TTTA)n Simple_repeat Simple_repeat 4 80 0 7 1030 236 234 6 19 chr11 58347835 58347897 -63495959 + B1F SINE Alu 5 64 -85 7 1030 981 126 22 0 chr11 58348023 58348158 -63495698 + B1_Mur3 SINE Alu 5 142 -7 7 1030 271 113 16 16 chr11 58348657 58348720 -63495136 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1030 10909 96 20 13 chr11 58349063 58350717 -63493139 - MusHAL1 LINE L1 -284 2428 764 7 1030 9968 143 13 31 chr11 58350716 58352352 -63491504 + L1_Mm LINE L1 3656 5292 -591 7 1030 1726 147 18 4 chr11 58352352 58352632 -63491224 + Lx LINE L1 6366 6649 -5 7 1030 9968 143 13 31 chr11 58352632 58352732 -63491124 + L1_Mm LINE L1 5293 5361 -522 7 1030 2307 182 236 85 chr11 58352722 58353606 -63490250 + L1_Mur3 LINE L1 1577 2594 -3286 7 1030 1486 222 33 73 chr11 58353616 58353878 -63489978 - MYSERV6-int LTR ERVK -524 8435 8175 7 1030 645 49 0 0 chr11 58353878 58353959 -63489897 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 7 1030 1486 222 33 73 chr11 58353959 58354147 -63489709 - MYSERV6-int LTR ERVK -785 8174 8003 7 1030 766 117 54 22 chr11 58354147 58354324 -63489532 - RMER17B LTR ERVK -495 463 280 7 1030 351 190 182 74 chr11 58354324 58354500 -63489356 - MYSERV6-int LTR ERVK -973 7986 7792 7 1030 458 301 16 74 chr11 58354500 58354690 -63489166 - RMER4A LTR ERVK -31 435 257 7 1030 450 295 61 49 chr11 58354691 58354855 -63489001 - MYSERV-int LTR ERVK -1422 5128 4963 7 1030 933 314 81 35 chr11 58354985 58355441 -63488415 + RMER5 LTR ERV1 50 526 -8 7 1030 429 95 0 0 chr11 58357575 58357638 -63486218 + (TATG)n Simple_repeat Simple_repeat 2 64 0 7 1030 332 22 22 0 chr11 58359390 58359435 -63484421 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1030 350 212 74 66 chr11 58359489 58359512 -63484344 + MT2B LTR ERVL 136 159 -442 7 1030 717 144 68 0 chr11 58359512 58359630 -63484226 + B1_Mur3 SINE Alu 2 127 -22 7 1030 223 122 0 39 chr11 58359636 58359687 -63484169 + GA-rich Low_complexity Low_complexity 2 50 0 7 1030 1715 165 70 10 chr11 58361613 58361913 -63481943 - ORR1A3 LTR MaLR -8 318 1 7 1030 1104 213 111 0 chr11 58361976 58362370 -63481486 + L1_Mur3 LINE L1 965 1386 -4491 7 1030 874 228 10 5 chr11 58362366 58362573 -63481283 + L1_Mur3 LINE L1 1665 1872 -4008 7 1030 7783 187 40 13 chr11 58362570 58364161 -63479695 + L1_Mur3 LINE L1 3600 5233 -647 7 1030 4577 24 0 2 chr11 58366199 58366693 -63477163 - MT2_Mm LTR ERVL 0 493 1 7 1030 187 298 47 23 chr11 58366918 58367004 -63476852 + L2 LINE L2 2904 2991 -428 7 1030 236 317 0 48 chr11 58368547 58368610 -63475246 + B1F1 SINE Alu 5 64 -85 7 1030 534 16 0 0 chr11 58368631 58368694 -63475162 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1030 662 250 0 0 chr11 58368761 58368889 -63474967 + B1_Mus2 SINE Alu 2 129 -18 7 1030 272 164 0 32 chr11 58368897 58368960 -63474896 + GA-rich Low_complexity Low_complexity 3 63 0 7 1030 8242 169 26 7 chr11 58369637 58371070 -63472786 - Lx5 LINE L1 -2 7048 5588 7 1030 29706 125 7 7 chr11 58371089 58377335 -63466521 - L1_Mus3 LINE L1 0 6638 397 7 1030 309 270 44 54 chr11 58377741 58377934 -63465922 - L1M2 LINE L1 -448 5852 5662 7 1030 272 282 12 0 chr11 58377996 58378081 -63465775 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 1030 783 304 111 36 chr11 58378700 58379140 -63464716 + RMER5 LTR ERV1 50 522 -12 7 1030 1260 41 7 0 chr11 58379703 58379849 -63464007 + B1_Mus2 SINE Alu 1 147 0 7 1030 225 306 37 93 chr11 58381886 58381994 -63461862 - RLTR1 LTR ERV1 -349 275 174 7 1030 212 262 16 144 chr11 58383186 58383266 -63460590 + PB1D10 SINE Alu 9 81 -36 7 1030 594 0 0 0 chr11 58383266 58383332 -63460524 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1030 212 262 16 144 chr11 58383332 58383376 -63460480 + PB1D10 SINE Alu 82 117 0 7 1030 313 247 0 47 chr11 58383514 58383599 -63460257 + B1_Mur4 SINE Alu 68 148 -2 7 1030 1151 112 0 6 chr11 58383599 58383779 -63460077 + (GAA)n Simple_repeat Simple_repeat 2 180 0 7 1030 812 120 0 8 chr11 58383806 58383932 -63459924 + L1_Mus1 LINE L1 6443 6567 0 7 1030 1074 51 87 0 chr11 58384541 58384679 -63459177 - B1_Mur4 SINE Alu 0 150 1 7 1030 186 143 0 0 chr11 58384744 58384779 -63459077 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1030 7597 69 10 22 chr11 58384781 58385833 -63458023 - L1_Mus2 LINE L1 0 6566 5523 7 1030 3719 32 0 128 chr11 58385908 58386408 -63457448 + RLTR10C LTR ERVK 1 436 0 7 1030 290 45 0 22 chr11 58389598 58389643 -63454213 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1030 821 300 143 49 chr11 58389835 58390431 -63453425 + Lx8 LINE L1 5864 6515 -958 7 1030 447 287 27 10 chr11 58390387 58390570 -63453286 - Lx8 LINE L1 -933 6711 6400 7 1030 486 75 0 0 chr11 58390837 58390904 -63452952 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1030 255 122 0 0 chr11 58390927 58390976 -63452880 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1030 862 229 53 14 chr11 58392417 58392625 -63451231 + B3 SINE B2 1 216 0 7 1030 348 24 0 0 chr11 58393187 58393228 -63450628 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1030 447 19 0 0 chr11 58393504 58393556 -63450300 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1030 186 189 0 0 chr11 58393639 58393676 -63450180 + (CAT)n Simple_repeat Simple_repeat 2 38 0 7 1030 25 31 0 0 chr11 58393891 58393923 -63449933 + AT_rich Low_complexity Low_complexity 1 32 0 7 1030 239 281 136 22 chr11 58395597 58395870 -63447986 - L1M4c LINE L1 -2328 4048 3745 7 1030 368 229 20 0 chr11 58395896 58396155 -63447701 + (TG)n Simple_repeat Simple_repeat 1 264 0 7 1030 459 230 24 131 chr11 58396180 58396355 -63447501 - B3A SINE B2 -3 213 58 7 1030 379 326 99 24 chr11 58396387 58396720 -63447136 - L1M4c LINE L1 -3922 2462 2105 7 1030 7087 59 51 30 chr11 58396787 58397561 -63446295 - L1_Mus2 LINE L1 -4 6562 5768 7 1030 3033 102 35 5 chr11 58397561 58397985 -63445871 + RLTR9B LTR ERVK 1 437 0 7 1030 7087 92 20 19 chr11 58397985 58398459 -63445397 - L1_Mus2 LINE L1 -116 5767 5294 7 1030 1884 199 36 43 chr11 58398832 58399273 -63444583 + BGLII_B LTR ERVK 4 441 0 7 1030 3001 180 52 27 chr11 58400562 58401157 -63442699 - Lx5 LINE L1 -60 6990 6381 7 1030 261 75 0 0 chr11 58401327 58401367 -63442489 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 7 1030 451 316 25 6 chr11 58401369 58401528 -63442328 + MER74C LTR ERVL 11 172 -288 7 1030 725 150 0 70 chr11 58402509 58402638 -63441218 + Lx5 LINE L1 6671 6790 -260 7 1030 570 41 0 0 chr11 58402639 58402712 -63441144 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1030 1263 41 0 0 chr11 58402941 58403088 -63440768 + B1_Mm SINE Alu 1 147 0 7 1030 233 0 62 0 chr11 58403090 58403122 -63440734 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1030 3584 184 15 21 chr11 58403175 58403830 -63440026 + Lx5 LINE L1 6397 7047 -3 7 1030 312 270 11 0 chr11 58404033 58404122 -63439734 + L1MA5 LINE L1 2677 2766 -3377 7 1030 333 188 156 0 chr11 58404138 58404202 -63439654 - ORR1E LTR MaLR -259 100 27 7 1030 467 304 81 15 chr11 58404278 58404589 -63439267 + L1MA5 LINE L1 4273 4617 -1529 7 1030 2187 188 24 35 chr11 58404624 58404710 -63439146 + MTC LTR MaLR 1 83 -338 7 1030 2412 82 67 6 chr11 58404710 58405054 -63438802 + RLTR10B2 LTR ERVK 1 365 0 7 1030 2187 188 24 35 chr11 58405054 58405391 -63438465 + MTC LTR MaLR 84 419 -2 7 1030 877 248 46 68 chr11 58405419 58405700 -63438156 + ORR1E LTR MaLR 84 358 -1 7 1030 324 272 2 0 chr11 58405761 58405846 -63438010 - L1M4 LINE L1 -2059 4087 3996 7 1030 439 278 37 0 chr11 58405915 58406023 -63437833 - RSINE1 SINE B4 -26 139 28 7 1030 311 246 118 67 chr11 58406568 58406703 -63437153 + L1MEf LINE L1 1913 2054 -4146 7 1030 828 248 38 12 chr11 58407195 58407406 -63436450 + B3A SINE B2 7 208 -8 7 1030 928 146 11 0 chr11 58407423 58407601 -63436255 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1030 322 211 139 59 chr11 58407625 58407726 -63436130 + HAL1-3A_ME LINE L1 1975 2083 -775 7 1030 458 274 108 49 chr11 58407805 58408124 -63435732 + L1MA5 LINE L1 5552 5893 -263 7 1030 555 16 0 0 chr11 58408981 58409045 -63434811 + (TC)n Simple_repeat Simple_repeat 2 65 0 7 1030 333 0 0 0 chr11 58409045 58409081 -63434775 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1030 21 0 0 0 chr11 58409201 58409222 -63434634 + AT_rich Low_complexity Low_complexity 1 21 0 7 1030 641 231 8 0 chr11 58413157 58413274 -63430582 + B1_Mur2 SINE Alu 29 146 -3 7 1030 444 37 0 0 chr11 58413282 58413336 -63430520 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1030 1996 55 8 0 chr11 58413363 58413616 -63430240 - L1_Mus1 LINE L1 -3 6564 6310 7 1030 1310 181 5 0 chr11 58414313 58414528 -63429328 - B3 SINE B2 0 216 1 7 1030 21 57 0 0 chr11 58414884 58414919 -63428937 + AT_rich Low_complexity Low_complexity 1 35 0 7 1030 531 0 0 0 chr11 58414919 58414978 -63428878 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1030 687 220 0 0 chr11 58414979 58415097 -63428759 - RSINE1 SINE B4 -44 121 4 7 1030 320 289 48 75 chr11 58415208 58415354 -63428502 + MT2B LTR ERVL 137 278 -323 8 1030 594 241 0 0 chr11 58415242 58415358 -63428498 + B1_Mur1 SINE Alu 11 126 -23 8 1030 1164 212 12 17 chr11 58415581 58415821 -63428035 - RLTR42 LTR ERVK 0 239 1 8 1030 434 282 57 0 chr11 58415954 58416078 -63427778 + B1_Mus2 SINE Alu 1 131 -16 8 1030 2080 173 5 86 chr11 58416079 58416521 -63427335 - RLTR24 LTR ERV1 0 529 124 8 1030 1166 162 5 48 chr11 58416708 58416916 -63426940 + RLTR24 LTR ERV1 1 199 -330 8 1030 1298 208 123 76 chr11 58417039 58417461 -63426395 - RMER10A LTR ERVL 0 442 1 8 1030 23 54 0 0 chr11 58417652 58417689 -63426167 + AT_rich Low_complexity Low_complexity 1 37 0 8 1030 870 119 15 0 chr11 58417707 58417841 -63426015 - ORR1A4 LTR MaLR 0 329 194 8 1030 253 259 25 0 chr11 58418091 58418172 -63425684 - L1M2 LINE L1 -726 5574 5492 8 1030 397 331 34 61 chr11 58418312 58418576 -63425280 - L1M2 LINE L1 -784 5359 5103 8 1030 1121 247 74 24 chr11 58420585 58420883 -63422973 - MTD LTR MaLR -86 333 21 8 1030 375 41 0 0 chr11 58420883 58420932 -63422924 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 8 1030 336 183 0 16 chr11 58420981 58421042 -63422814 + MTD LTR MaLR 313 372 -47 8 1030 2684 72 27 14 chr11 58421193 58421560 -63422296 - L1Md_F2 LINE L1 -12 6570 6199 8 1030 324 0 0 0 chr11 58422962 58422998 -63420858 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1030 443 266 46 226 chr11 58423578 58424078 -63419778 + MLT1F1 LTR MaLR 125 534 -35 8 1030 522 0 0 0 chr11 58424112 58424170 -63419686 + (TAA)n Simple_repeat Simple_repeat 2 59 0 8 1030 434 236 16 147 chr11 58424630 58424759 -63419097 + PB1 SINE Alu 9 127 0 8 1030 824 30 64 23 chr11 58424805 58424976 -63418880 + (CAGAG)n Simple_repeat Simple_repeat 3 180 0 8 1030 334 111 44 66 chr11 58424994 58425177 -63418679 + (CAGAG)n Simple_repeat Simple_repeat 2 180 0 8 1030 305 202 93 3 chr11 58425795 58425892 -63417964 + B4 SINE B4 8 117 -48 8 1030 230 0 33 0 chr11 58426496 58426526 -63417330 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 8 1030 513 0 0 0 chr11 58427395 58427452 -63416404 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1030 546 221 121 45 chr11 58428593 58428792 -63415064 + RMER21B LTR ERV1 296 509 -333 8 1030 241 47 23 23 chr11 58430398 58430442 -63413414 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1030 331 253 197 44 chr11 58431110 58431313 -63412543 + MIR SINE MIR 23 256 -6 8 1030 582 54 0 0 chr11 58432938 58433012 -63410844 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1030 249 263 0 0 chr11 58433036 58433093 -63410763 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1030 395 183 61 0 chr11 58433774 58433856 -63410000 - B1_Mur1 SINE Alu -5 144 58 8 1030 1098 205 5 10 chr11 58433950 58434152 -63409704 - B3 SINE B2 -15 201 1 8 1030 756 262 45 20 chr11 58434263 58434462 -63409394 + B4 SINE B4 2 205 -87 8 1030 528 340 51 12 chr11 58434493 58434749 -63409107 + Lx8 LINE L1 6992 7257 -216 8 1030 296 355 0 0 chr11 58434941 58435017 -63408839 + B4 SINE B4 215 290 -2 8 1030 427 288 50 0 chr11 58435521 58435660 -63408196 + B1F SINE Alu 1 146 -3 8 1030 427 123 0 15 chr11 58435970 58436036 -63407820 - B1_Mur4 SINE Alu -85 65 1 8 1030 289 248 0 129 chr11 58436036 58436077 -63407779 - MT2B LTR ERVL -371 214 130 8 1030 526 128 220 0 chr11 58436112 58436221 -63407635 + B1_Mur2 SINE Alu 17 149 0 8 1030 899 254 11 11 chr11 58436287 58436478 -63407378 + B3 SINE B2 4 194 -22 8 1030 624 220 17 0 chr11 58437818 58437936 -63405920 + B1_Mur1 SINE Alu 13 132 -17 8 1030 369 0 0 0 chr11 58437938 58437979 -63405877 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8 1030 934 144 20 7 chr11 58437983 58438130 -63405726 + B1_Mur4 SINE Alu 2 150 0 8 1030 233 281 0 35 chr11 58438136 58438221 -63405635 + GA-rich Low_complexity Low_complexity 3 84 0 8 1030 825 278 127 17 chr11 58439763 58440063 -63403793 - MTEa LTR MaLR -37 342 10 8 1030 245 189 214 82 chr11 58440130 58440228 -63403628 - PB1D10 SINE Alu -2 115 5 8 1030 384 290 41 56 chr11 58440671 58440941 -63402915 + RMER12 LTR ERVK 762 1027 -295 8 1030 755 260 8 2 chr11 58441165 58441319 -63402537 + B3A SINE B2 1 152 -46 8 1030 351 0 0 0 chr11 58441319 58441358 -63402498 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1030 777 113 0 0 chr11 58441358 58441498 -63402358 + (GA)n Simple_repeat Simple_repeat 2 142 0 8 1030 336 325 94 83 chr11 58441498 58441523 -63402333 + B2_Mm1t SINE B2 151 182 -11 8 1030 606 184 0 0 chr11 58442152 58442277 -63401579 + (TCTCTG)n Simple_repeat Simple_repeat 1 125 0 8 1030 1401 66 22 6 chr11 58444697 58444880 -63398976 - B2_Mm2 SINE B2 -9 186 1 8 1030 299 297 119 0 chr11 58445039 58445140 -63398716 - PB1D10 SINE Alu -4 113 1 8 1030 414 0 0 0 chr11 58445159 58445205 -63398651 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 8 1030 213 65 0 0 chr11 58445541 58445572 -63398284 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1030 453 282 126 7 chr11 58446107 58446250 -63397606 + RSINE1 SINE B4 6 165 0 8 1030 257 211 168 53 chr11 58446522 58446617 -63397239 + MTEb LTR MaLR 263 373 -6 8 1030 290 274 28 127 chr11 58446962 58447001 -63396855 + MT2B LTR ERVL 130 154 -447 8 1030 641 194 35 56 chr11 58447001 58447143 -63396713 + B1_Mur4 SINE Alu 1 139 -11 8 1030 563 250 47 0 chr11 58447247 58447375 -63396481 - B1_Mur1 SINE Alu -7 142 9 8 1030 249 108 0 0 chr11 58447588 58447625 -63396231 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 8 1030 1796 196 45 30 chr11 58448416 58448820 -63395036 - RMER10A LTR ERVL -12 430 21 8 1030 477 0 0 0 chr11 58449274 58449327 -63394529 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1030 805 153 13 0 chr11 58450040 58450197 -63393659 + GA-rich Low_complexity Low_complexity 1 159 0 8 1030 612 250 14 14 chr11 58450724 58450862 -63392994 + RSINE1 SINE B4 2 139 -26 8 1030 207 0 0 0 chr11 58450862 58450885 -63392971 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1030 755 207 11 13 chr11 58452544 58452730 -63391126 + B3A SINE B2 1 184 -32 8 1030 225 0 0 0 chr11 58452863 58452888 -63390968 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 8 1030 467 56 14 0 chr11 58453140 58453211 -63390645 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 1030 435 265 51 0 chr11 58453225 58453323 -63390533 - RSINE1 SINE B4 -38 127 25 8 1030 396 0 0 0 chr11 58453334 58453378 -63390478 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 8 1030 396 261 6 160 chr11 58453398 58453567 -63390289 + B1F SINE Alu 2 144 -5 8 1030 294 227 67 0 chr11 58453567 58453642 -63390214 + ID4 SINE ID 1 80 -3 8 1030 195 69 0 0 chr11 58453741 58453770 -63390086 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1030 389 226 56 19 chr11 58455703 58455811 -63388045 + RSINE1 SINE B4 18 129 -36 8 1030 180 111 0 0 chr11 58455835 58455862 -63387994 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1030 202 299 0 44 chr11 58456095 58456186 -63387670 + C-rich Low_complexity Low_complexity 6 92 0 8 1030 826 75 0 0 chr11 58456233 58456339 -63387517 - B2_Mm2 SINE B2 -88 107 2 8 1030 262 215 698 35 chr11 58457151 58457267 -63386589 + RMER30 DNA MER1_type 7 199 -3 8 1031 932 231 58 119 chr11 58458522 58458832 -63385024 + B4A SINE B4 2 292 0 8 1031 240 35 0 0 chr11 58458832 58458861 -63384995 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1031 486 0 0 0 chr11 58458861 58458915 -63384941 + (CACTA)n Simple_repeat Simple_repeat 5 58 0 8 1031 459 0 0 0 chr11 58460030 58460081 -63383775 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1031 298 316 114 23 chr11 58461147 58461322 -63382534 - MER21B LTR ERV1 -61 802 612 8 1031 35 0 0 0 chr11 58461360 58461395 -63382461 + AT_rich Low_complexity Low_complexity 1 35 0 8 1031 528 276 52 0 chr11 58461430 58461564 -63382292 - B3 SINE B2 -27 189 49 8 1031 2581 291 115 40 chr11 58461729 58462827 -63381029 - L1M2 LINE L1 -1095 5048 3860 8 1031 2070 152 12 158 chr11 58462827 58463320 -63380536 - MTC LTR MaLR 0 421 1 8 1031 2581 291 115 40 chr11 58463320 58463627 -63380229 - L1M2 LINE L1 -2284 3859 3537 8 1031 653 284 94 57 chr11 58463641 58463906 -63379950 - MER21B LTR ERV1 -261 602 328 8 1031 668 81 0 0 chr11 58464142 58464229 -63379627 + 4.5SRNA scRNA scRNA 5 91 -3 8 1031 1237 34 7 0 chr11 58464229 58464375 -63379481 + B1_Mus2 SINE Alu 1 147 0 8 1031 234 105 0 0 chr11 58464377 58464415 -63379441 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1031 237 132 0 0 chr11 58464486 58464524 -63379332 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 8 1031 639 129 20 39 chr11 58465643 58465796 -63378060 + CT-rich Low_complexity Low_complexity 2 151 0 8 1031 311 73 0 0 chr11 58465966 58466000 -63377856 - HAL1-3A_ME LINE L1 -848 2010 1977 8 1031 696 184 106 94 chr11 58466000 58466180 -63377676 - B3A SINE B2 -16 182 1 8 1031 903 203 61 20 chr11 58466298 58466494 -63377362 - B3 SINE B2 -11 205 2 8 1031 427 220 87 39 chr11 58466533 58466637 -63377219 + PB1D10 SINE Alu 9 117 0 8 1031 196 93 0 65 chr11 58466643 58466689 -63377167 + A-rich Low_complexity Low_complexity 3 45 0 8 1031 192 347 51 57 chr11 58468505 58468682 -63375174 + L2b LINE L2 2916 3091 -284 8 1031 517 288 146 24 chr11 58469368 58469614 -63374242 + B4A SINE B4 1 276 -16 8 1031 1552 205 189 37 chr11 58469859 58470351 -63373505 + RMER2 LTR ERV1 1 567 0 8 1031 254 192 48 60 chr11 58470411 58470494 -63373362 - RMER4B LTR ERVK 0 585 504 8 1031 1583 164 92 16 chr11 58470474 58470790 -63373066 - RMER4B LTR ERVK -245 340 1 8 1031 186 43 0 0 chr11 58472769 58472792 -63371064 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 8 1031 25 51 0 0 chr11 58472958 58472997 -63370859 + AT_rich Low_complexity Low_complexity 1 39 0 8 1031 186 43 0 0 chr11 58473753 58473776 -63370080 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 9 1031 645 47 0 0 chr11 58474950 58475035 -63368821 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 9 1031 720 235 8 16 chr11 58475048 58475261 -63368595 - L1_Mur3 LINE L1 -1055 4825 4610 9 1031 678 238 20 0 chr11 58476103 58476200 -63367656 + B3A SINE B2 4 100 -98 9 1031 1488 23 0 0 chr11 58476200 58476414 -63367442 + (CCCCAG)n Simple_repeat Simple_repeat 1 214 0 9 1031 678 256 32 27 chr11 58476414 58476515 -63367341 + B3A SINE B2 99 199 -17 9 1031 498 33 0 0 chr11 58476806 58476866 -63366990 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1031 671 286 11 51 chr11 58476963 58477140 -63366716 - ID_B1 SINE B4 -23 201 32 9 1031 231 266 35 71 chr11 58477087 58477172 -63366684 - ID4_ SINE ID -1 82 1 9 1031 686 235 0 0 chr11 58477876 58478008 -63365848 + RSINE1 SINE B4 5 136 -29 9 1031 477 0 0 0 chr11 58478010 58478063 -63365793 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1031 599 264 112 60 chr11 58480745 58481092 -63362764 + MTEa LTR MaLR 12 376 -3 9 1031 243 0 0 0 chr11 58481229 58481256 -63362600 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1031 773 250 0 0 chr11 58481262 58481410 -63362446 - RSINE1 SINE B4 -17 148 1 9 1031 1272 267 63 11 chr11 58482388 58482770 -63361086 + MTD LTR MaLR 18 419 0 9 1031 913 134 30 30 chr11 58482847 58483016 -63360840 + B2_Mm2 SINE B2 1 169 -26 9 1031 311 218 0 0 chr11 58483106 58483161 -63360695 + ID SINE ID 2 56 -168 9 1031 528 30 0 0 chr11 58483167 58483233 -63360623 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 1031 361 245 52 31 chr11 58483238 58483335 -63360521 + ID_B1 SINE B4 105 203 -21 9 1031 316 140 0 83 chr11 58483676 58483785 -63360071 + T-rich Low_complexity Low_complexity 1 100 0 9 1031 288 136 0 0 chr11 58483802 58483846 -63360010 - B1_Mm SINE Alu 0 147 104 9 1031 225 311 302 0 chr11 58484527 58484633 -63359223 + ID_B1 SINE B4 1 138 -86 9 1031 273 259 212 9 chr11 58484584 58484697 -63359159 + B1F1 SINE Alu 9 144 -5 9 1031 710 259 64 10 chr11 58484705 58484908 -63358948 + B3 SINE B2 1 214 -2 9 1031 723 248 0 0 chr11 58485086 58485223 -63358633 - ID_B1 SINE B4 -4 220 84 9 1031 534 262 231 0 chr11 58485443 58485603 -63358253 + B3 SINE B2 15 211 -5 9 1031 4916 77 10 22 chr11 58485606 58486280 -63357576 + Lx3_Mus LINE L1 6344 7009 0 9 1031 39107 10 0 1 chr11 58487313 58493310 -63350546 + L1Md_A LINE L1 1 5586 -297 9 1031 9219 2 0 0 chr11 58493310 58494306 -63349550 + L1Md_A LINE L1 5587 6582 0 9 1031 279 243 66 83 chr11 58495983 58496092 -63347764 + PB1D10 SINE Alu 5 112 -8 9 1031 543 117 0 0 chr11 58496157 58496251 -63347605 + (CA)n Simple_repeat Simple_repeat 1 94 0 9 1031 339 145 0 0 chr11 58497160 58497229 -63346627 + (GA)n Simple_repeat Simple_repeat 2 70 0 9 1031 257 274 0 0 chr11 58499219 58499270 -63344586 - B1_Mur2 SINE Alu -27 122 72 9 1031 627 150 10 20 chr11 58499347 58499449 -63344407 - B3 SINE B2 -115 101 1 9 1031 546 313 16 43 chr11 58499576 58499763 -63344093 + B3A SINE B2 1 182 -34 9 1031 490 172 0 21 chr11 58499905 58500000 -63343856 + Lx4B LINE L1 6832 6924 -134 9 1031 469 231 25 0 chr11 58500001 58500122 -63343734 + Lx4B LINE L1 6926 7049 -9 1 1031 320 355 0 0 chr11 58500326 58500436 -63343420 + Lx8 LINE L1 6186 6295 -1178 2 1031 571 240 8 8 chr11 58500484 58500610 -63343246 + B3 SINE B2 5 130 -86 3 1031 745 246 87 84 chr11 58500809 58501142 -63342714 + ORR1E LTR MaLR 26 359 0 4 1031 986 308 39 17 chr11 58501145 58501505 -63342351 + ORR1E-int LTR MaLR 3 370 -1210 4 1031 531 135 11 0 chr11 58503102 58503191 -63340665 + RLTR10D LTR ERVK 1 90 -269 5 1031 444 227 68 43 chr11 58503188 58503349 -63340507 + RLTR10D LTR ERVK 195 359 0 5 1031 19356 261 16 11 chr11 58503349 58508500 -63335356 + IAP-d-int LTR ERVK 1 5176 -1366 5 1031 2416 235 3 12 chr11 58508494 58509076 -63334780 + IAP-d-int LTR ERVK 5479 6055 -487 5 1031 2096 183 19 0 chr11 58509129 58509489 -63334367 + IAP-d-int LTR ERVK 6168 6534 -8 5 1031 1214 212 57 39 chr11 58509493 58509827 -63334029 + RLTR10D LTR ERVK 20 359 0 5 1031 509 255 81 16 chr11 58509879 58510071 -63333785 + ORR1E-int LTR MaLR 1188 1370 0 6 1031 658 242 1 6 chr11 58510071 58510229 -63333627 + ORR1E LTR MaLR 1 152 -232 6 1031 319 282 72 83 chr11 58510283 58510476 -63333380 + RLTR12B LTR ERVK 121 311 -217 7 1031 281 325 75 25 chr11 58510744 58510905 -63332951 + ORR1E LTR MaLR 132 300 -59 6 1031 437 201 14 2 chr11 58510888 58511002 -63332854 + ORR1E LTR MaLR 260 371 -8 6 1031 489 71 0 0 chr11 58511301 58511371 -63332485 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1031 519 296 75 20 chr11 58511371 58511626 -63332230 - B4A SINE B4 -21 271 3 9 1031 424 319 45 45 chr11 58514382 58514605 -63329251 + ID_B1 SINE B4 2 224 0 1 1031 1165 62 7 0 chr11 58514625 58514770 -63329086 + B1_Mus2 SINE Alu 2 147 0 1 1031 22 0 0 0 chr11 58515034 58515056 -63328800 + AT_rich Low_complexity Low_complexity 1 22 0 1 1031 20553 61 7 0 chr11 58517062 58519659 -63324197 + L1Md_F2 LINE L1 2973 5585 -298 1 1031 8547 31 1 3 chr11 58519660 58520658 -63323198 + L1Md_F2 LINE L1 5587 6582 0 1 1031 507 234 0 0 chr11 58520668 58520792 -63323064 + (TG)n Simple_repeat Simple_repeat 1 124 0 1 1031 505 290 0 0 chr11 58520801 58520925 -63322931 - B1_Mur3 SINE Alu -23 126 3 1 1031 211 347 48 32 chr11 58520822 58520947 -63322909 - B4A SINE B4 -98 194 68 1 1031 549 238 16 16 chr11 58520944 58521072 -63322784 - B3 SINE B2 -88 128 1 1 1031 412 362 26 31 chr11 58521207 58521398 -63322458 + B3A SINE B2 8 197 -1 1 1031 1045 178 40 22 chr11 58521515 58521739 -63322117 + Lx4B LINE L1 6831 7058 0 1 1031 22 35 0 0 chr11 58521774 58521803 -63322053 + AT_rich Low_complexity Low_complexity 1 29 0 2 1031 3074 124 92 59 chr11 58522057 58522871 -63320985 + RMER17B LTR ERVK 3 853 -53 2 1031 2476 65 67 84 chr11 58522871 58523289 -63320567 - RLTR10A LTR ERVK 0 411 1 2 1031 1639 170 130 144 chr11 58523289 58523339 -63320517 + RMER17B LTR ERVK 854 894 -12 2 1031 245 119 0 0 chr11 58523367 58523409 -63320447 - ORR1D1 LTR MaLR 0 374 333 2 1031 497 207 153 0 chr11 58523414 58523525 -63320331 + B3A SINE B2 5 132 -66 2 1031 626 294 54 66 chr11 58523698 58524030 -63319826 + ORR1E LTR MaLR 27 354 -5 2 1031 1037 294 24 57 chr11 58524039 58524422 -63319434 + ORR1E-int LTR MaLR 3 372 -1208 2 1031 839 300 84 4 chr11 58524409 58524670 -63319186 + ORR1E-int LTR MaLR 485 766 -814 2 1031 1151 294 242 21 chr11 58524705 58525279 -63318577 - ORR1E-int LTR MaLR -877 703 3 2 1031 861 287 48 53 chr11 58525286 58525643 -63318213 - ORR1E LTR MaLR -4 355 1 2 1031 513 200 146 0 chr11 58525812 58525922 -63317934 - B3 SINE B2 -86 130 5 2 1031 307 284 11 11 chr11 58525970 58526059 -63317797 - Lx8 LINE L1 -1178 6295 6207 2 1031 2010 113 12 51 chr11 58526326 58526661 -63317195 + RLTRETN_Mm LTR ERVK 1 322 0 2 1031 24017 57 6 33 chr11 58526662 58529891 -63313965 + MMETn-int LTR ERVK 2 3141 -1703 2 1031 8999 109 13 21 chr11 58529925 58531295 -63312561 + MMETn-int LTR ERVK 3486 4844 0 2 1031 1966 123 12 51 chr11 58531295 58531630 -63312226 + RLTRETN_Mm LTR ERVK 1 322 0 2 1031 1050 186 14 9 chr11 58531630 58531852 -63312004 - Lx4B LINE L1 -5 7053 6831 3 1031 802 79 32 0 chr11 58531998 58532124 -63311732 + (TATG)n Simple_repeat Simple_repeat 1 130 0 3 1031 390 270 38 3 chr11 58532145 58532281 -63311575 - B3A SINE B2 -56 142 2 3 1031 604 178 0 18 chr11 58532409 58532518 -63311338 + B3 SINE B2 1 107 -109 3 1031 215 333 0 0 chr11 58532578 58532635 -63311221 + B1_Mur2 SINE Alu 72 128 -21 3 1031 384 250 0 0 chr11 58532635 58532747 -63311109 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 1031 579 62 0 0 chr11 58534692 58534772 -63309084 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1031 1134 90 0 0 chr11 58535004 58535148 -63308708 + B1_Mus1 SINE Alu 2 145 -3 3 1031 242 29 0 28 chr11 58535148 58535184 -63308672 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1031 495 112 0 0 chr11 58535850 58535930 -63307926 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1031 255 278 56 0 chr11 58536017 58536107 -63307749 - PB1D10 SINE Alu -21 96 2 4 1031 230 207 22 99 chr11 58536493 58536584 -63307272 + L1MA7 LINE L1 6185 6268 -23 4 1031 934 228 25 10 chr11 58539208 58539407 -63304449 - B3 SINE B2 0 216 15 4 1031 634 263 0 0 chr11 58539629 58539766 -63304090 + ID_B1 SINE B4 84 220 -4 4 1031 901 266 0 9 chr11 58539944 58540160 -63303696 - B3 SINE B2 -2 214 1 4 1031 242 274 202 9 chr11 58540168 58540282 -63303574 - B1F1 SINE Alu -5 144 9 4 1031 317 182 0 57 chr11 58541022 58541127 -63302729 + (CAAA)n Simple_repeat Simple_repeat 2 100 0 4 1031 345 235 12 36 chr11 58541487 58541571 -63302285 - ID_B1 SINE B4 -38 186 105 4 1031 402 69 0 0 chr11 58541576 58541634 -63302222 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1031 285 236 0 0 chr11 58541640 58541695 -63302161 - ID SINE ID -168 56 2 4 1031 1138 266 60 11 chr11 58541794 58542163 -63301693 - MTD LTR MaLR -15 404 18 4 1031 2071 86 0 5 chr11 58543067 58543369 -63300487 + L1Md_F2 LINE L1 5323 5616 -540 5 1031 8568 28 1 0 chr11 58543369 58544349 -63299507 + L1Md_F2 LINE L1 5588 6568 -14 5 1031 34 24 0 0 chr11 58544396 58544437 -63299419 + AT_rich Low_complexity Low_complexity 1 41 0 5 1031 336 122 0 0 chr11 58544437 58544486 -63299370 + RSINE1 SINE B4 1 49 -116 5 1031 425 267 126 58 chr11 58544642 58544984 -63298872 - MTEa LTR MaLR -3 376 12 5 1031 477 0 0 0 chr11 58547688 58547741 -63296115 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1031 653 227 0 0 chr11 58547743 58547875 -63295981 - RSINE1 SINE B4 -29 136 5 5 1031 613 299 6 52 chr11 58548622 58548795 -63295061 + ID_B1 SINE B4 34 198 -26 5 1031 388 229 0 107 chr11 58548686 58548808 -63295048 + PB1D10 SINE Alu 9 117 0 5 1031 372 182 0 0 chr11 58548849 58548937 -63294919 + CT-rich Low_complexity Low_complexity 1 88 0 5 1031 752 204 7 0 chr11 58548937 58549079 -63294777 - B1_Mur2 SINE Alu -5 144 2 5 1031 301 68 0 63 chr11 58549403 58549466 -63294390 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 6 1031 758 196 7 0 chr11 58549478 58549626 -63294230 - B3A SINE B2 -41 157 9 6 1031 25 51 0 0 chr11 58551912 58551951 -63291905 + AT_rich Low_complexity Low_complexity 1 39 0 6 1031 2427 177 135 4 chr11 58553985 58554502 -63289354 + RMER4B LTR ERVK 1 585 0 6 1031 1277 218 202 33 chr11 58554587 58555038 -63288818 - RMER2 LTR ERV1 -27 540 14 6 1031 528 16 0 0 chr11 58555248 58555309 -63288547 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1031 212 114 45 0 chr11 58555318 58555362 -63288494 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 6 1031 609 277 107 16 chr11 58555394 58555647 -63288209 - B4A SINE B4 -16 276 1 6 1031 294 184 28 101 chr11 58557876 58557985 -63285871 - L1_Mur2 LINE L1 -6112 600 500 6 1031 227 254 0 14 chr11 58558383 58558455 -63285401 + T-rich Low_complexity Low_complexity 1 71 0 6 1031 9306 73 1 2 chr11 58558470 58559667 -63284189 - L1_Mus1 LINE L1 -2 6565 5374 7 1031 3403 38 2 0 chr11 58559667 58560062 -63283794 - MTA_Mm LTR MaLR 0 396 1 7 1031 8186 75 15 3 chr11 58560062 58561147 -63282709 - MTA_Mm-int LTR MaLR 0 1098 1 7 1031 3380 38 10 0 chr11 58561147 58561539 -63282317 - MTA_Mm LTR MaLR 0 396 1 7 1031 9306 102 1 12 chr11 58561539 58562390 -63281466 - L1_Mus1 LINE L1 -510 5373 4587 7 1031 1600 50 35 0 chr11 58562390 58562591 -63281265 - L1_Mus1 LINE L1 0 6567 6360 7 1031 7255 173 1 59 chr11 58562591 58562695 -63281161 - L1_Mus1 LINE L1 -1291 4586 4490 7 1031 268 224 105 12 chr11 58562695 58562781 -63281075 + ORR1E-int LTR MaLR 1269 1362 -8 7 1031 641 242 0 0 chr11 58562788 58562920 -63280936 + ORR1E LTR MaLR 4 135 -224 7 1031 249 248 172 108 chr11 58562947 58563336 -63280520 + RLTR12B LTR ERVK 42 455 -113 7 1031 633 294 46 36 chr11 58563449 58563668 -63280188 + ORR1E LTR MaLR 139 359 0 7 1031 1362 88 0 40 chr11 58563757 58563958 -63279898 + B2_Mm2 SINE B2 1 193 -2 7 1031 462 18 0 0 chr11 58564115 58564170 -63279686 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1031 183 129 0 0 chr11 58564242 58564273 -63279583 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1031 616 275 66 19 chr11 58564273 58564529 -63279327 - B4A SINE B4 -20 272 5 7 1031 3432 78 32 18 chr11 58564706 58564879 -63278977 + RLTR44C LTR ERVK 1 173 -329 7 1031 1035 97 0 0 chr11 58564879 58565033 -63278823 + (TG)n Simple_repeat Simple_repeat 1 154 0 8 1031 3432 78 32 18 chr11 58565033 58565354 -63278502 + RLTR44C LTR ERVK 174 501 -1 7 1031 198 0 0 0 chr11 58567307 58567329 -63276527 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1031 541 282 56 33 chr11 58567938 58568151 -63275705 + ID_B1 SINE B4 2 219 -5 8 1031 282 268 0 0 chr11 58568310 58568433 -63275423 + (CA)n Simple_repeat Simple_repeat 2 124 0 8 1031 1979 69 13 67 chr11 58568599 58568911 -63274945 - L1Md_F2 LINE L1 -2 6580 6286 8 1031 189 94 0 0 chr11 58569092 58569124 -63274732 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1031 393 22 0 0 chr11 58570007 58570053 -63273803 + (ATTTG)n Simple_repeat Simple_repeat 2 47 0 8 1031 766 269 0 6 chr11 58570071 58570239 -63273617 - B3 SINE B2 -46 170 4 8 1031 1011 90 17 67 chr11 58570406 58570584 -63273272 + L1_Mus3 LINE L1 6463 6631 -7 8 1031 225 0 0 0 chr11 58572536 58572561 -63271295 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1031 423 83 0 0 chr11 58573031 58573091 -63270765 + (TATG)n Simple_repeat Simple_repeat 3 62 0 9 1031 347 186 0 0 chr11 58573098 58573157 -63270699 - B1_Mus2 SINE Alu -23 124 66 9 1031 360 0 0 0 chr11 58573194 58573234 -63270622 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 9 1031 1096 74 0 0 chr11 58573234 58573369 -63270487 - B1_Mus1 SINE Alu -13 135 1 9 1031 975 42 0 0 chr11 58573450 58573570 -63270286 + (TA)n Simple_repeat Simple_repeat 2 121 0 9 1031 261 0 0 0 chr11 58573570 58573598 -63270258 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1031 550 251 11 35 chr11 58573603 58573782 -63270074 + B3 SINE B2 1 181 -17 9 1031 474 18 0 0 chr11 58573786 58573841 -63270015 + (TAA)n Simple_repeat Simple_repeat 1 55 0 9 1031 900 225 27 18 chr11 58573938 58574160 -63269696 + Lx4B LINE L1 6831 7054 -4 9 1031 252 211 26 26 chr11 58574188 58574266 -63269590 + (TA)n Simple_repeat Simple_repeat 1 78 0 9 1031 432 227 146 0 chr11 58574536 58574646 -63269210 + B3 SINE B2 5 130 -86 1 1031 906 284 54 51 chr11 58574818 58575170 -63268686 + ORR1E LTR MaLR 1 353 -6 1 1031 1251 286 19 14 chr11 58575180 58575548 -63268308 + ORR1E-int LTR MaLR 3 372 -1208 1 1031 2398 255 120 22 chr11 58575537 58576314 -63267542 + ORR1E-int LTR MaLR 487 1339 -241 1 1031 320 64 21 0 chr11 58576325 58576372 -63267484 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1 1031 1470 217 3 39 chr11 58576387 58576694 -63267162 - Lx5 LINE L1 -49 7001 6706 1 1031 1732 157 50 35 chr11 58576692 58577088 -63266768 - L1_Mur2 LINE L1 -2580 3297 2896 1 1031 2071 218 77 99 chr11 58577144 58578089 -63265767 - RMER17B LTR ERVK -77 881 1 1 1031 2447 191 52 100 chr11 58578090 58578758 -63265098 - RMER17A-int LTR ERVK -3 1725 1090 1 1031 511 227 16 25 chr11 58578806 58578928 -63264928 - RMER17A-int LTR ERVK -623 1105 985 1 1031 756 143 19 45 chr11 58578966 58579120 -63264736 - RMER17A-int LTR ERVK -737 991 842 1 1031 261 0 0 0 chr11 58579664 58579693 -63264163 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1031 549 0 0 0 chr11 58579693 58579753 -63264103 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1031 1613 238 38 80 chr11 58579766 58580048 -63263808 - RMER17B LTR ERVK -332 626 359 1 1031 642 85 0 0 chr11 58580048 58580142 -63263714 + (GA)n Simple_repeat Simple_repeat 1 94 0 1 1031 1613 223 28 43 chr11 58580142 58580522 -63263334 - RMER17B LTR ERVK -600 358 1 1 1031 7936 163 50 36 chr11 58580522 58581327 -63262529 - L1_Mur2 LINE L1 -2975 2902 2062 1 1031 384 22 0 0 chr11 58581327 58581372 -63262484 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1031 7936 169 40 35 chr11 58581372 58582524 -63261332 - L1_Mur2 LINE L1 -3816 2061 935 1 1031 279 243 0 0 chr11 58583012 58583090 -63260766 - L1_Mur2 LINE L1 -5712 945 868 1 1031 1909 134 36 0 chr11 58583484 58583791 -63260065 - ORR1A3 LTR MaLR -8 318 1 1 1031 2183 148 2 100 chr11 58583791 58584242 -63259614 - ORR1A3-int LTR MaLR -21 1942 1537 1 1031 1447 134 17 4 chr11 58584254 58584494 -63259362 + RLTR19B LTR ERVK 473 715 0 1 1031 1688 143 40 127 chr11 58584495 58584944 -63258912 + RMER6C LTR ERVK 281 690 0 1 1031 25 65 0 0 chr11 58585073 58585119 -63258737 + AT_rich Low_complexity Low_complexity 1 46 0 1 1031 212 130 43 0 chr11 58585206 58585252 -63258604 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 1 1031 672 249 10 58 chr11 58585364 58585569 -63258287 + B3A SINE B2 4 198 0 1 1031 229 299 92 0 chr11 58585697 58585784 -63258072 - L1MA6 LINE L1 -21 6279 6185 1 1031 756 176 7 11 chr11 58585789 58585959 -63257897 - B2_Mm2 SINE B2 -26 167 1 1 1031 329 264 28 9 chr11 58585965 58586072 -63257784 - L1MA6 LINE L1 -119 6181 6073 1 1031 324 0 0 0 chr11 58587735 58587771 -63256085 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1031 342 0 0 0 chr11 58587917 58587955 -63255901 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1031 308 306 32 32 chr11 58587978 58588103 -63255753 - RSINE1 SINE B4 -39 126 2 1 1031 1023 161 177 0 chr11 58588250 58588442 -63255414 - URR1A DNA MER1_type 0 226 1 1 1031 240 371 0 40 chr11 58588668 58588769 -63255087 + ID_B1 SINE B4 79 175 -49 1 1031 397 336 0 0 chr11 58588680 58588787 -63255069 + PB1D10 SINE Alu 6 112 -5 1 1032 231 279 29 0 chr11 58589386 58589454 -63254402 - B4 SINE B4 -207 85 16 1 1032 235 293 0 0 chr11 58589401 58589459 -63254397 - tRNA-Ala-GCA tRNA tRNA -13 62 5 1 1032 600 209 0 0 chr11 58589555 58589732 -63254124 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1032 564 42 0 0 chr11 58590027 58590098 -63253758 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1032 461 225 0 0 chr11 58590098 58590187 -63253669 - B1_Mur2 SINE Alu -6 143 55 1 1032 708 156 0 0 chr11 58590808 58590936 -63252920 + (TG)n Simple_repeat Simple_repeat 1 128 0 1 1032 496 279 43 110 chr11 58590936 58591190 -63252666 - B4A SINE B4 0 292 56 1 1032 262 45 45 0 chr11 58591326 58591370 -63252486 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 1 1032 293 91 18 0 chr11 58591371 58591426 -63252430 - B1_Mur3 SINE Alu 0 149 94 1 1032 484 187 84 0 chr11 58591468 58591575 -63252281 + B1_Mur4 SINE Alu 35 150 0 1 1032 287 259 12 47 chr11 58593169 58593254 -63250602 + MLT1A1 LTR MaLR 67 148 -260 1 1032 497 229 28 9 chr11 58593270 58593376 -63250480 + PB1D10 SINE Alu 8 115 -2 1 1032 240 86 0 0 chr11 58593409 58593444 -63250412 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1032 663 229 114 73 chr11 58593455 58593771 -63250085 - RMER5 LTR ERV1 -10 524 196 1 1032 251 214 69 28 chr11 58593820 58593892 -63249964 - RMER5 LTR ERV1 -421 113 39 1 1032 444 284 0 0 chr11 58595308 58595417 -63248439 + ID_B1 SINE B4 103 211 -13 1 1032 357 320 49 0 chr11 58595417 58595428 -63248428 + B1F SINE Alu 22 147 -2 1 1032 297 169 0 0 chr11 58595794 58595853 -63248003 + (CAT)n Simple_repeat Simple_repeat 2 60 0 1 1032 336 276 0 0 chr11 58597524 58597600 -63246256 + ID4_ SINE ID 6 81 -2 1 1032 772 251 11 11 chr11 58599097 58599278 -63244578 + ID_B1 SINE B4 42 222 -2 1 1032 617 304 234 13 chr11 58600724 58601318 -63242538 - MER44C DNA MER2_type 0 733 9 1 1032 444 37 0 0 chr11 58601768 58601822 -63242034 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1032 24 0 0 0 chr11 58602223 58602247 -63241609 + AT_rich Low_complexity Low_complexity 1 24 0 1 1032 25 51 0 0 chr11 58602686 58602725 -63241131 + AT_rich Low_complexity Low_complexity 1 39 0 1 1032 267 31 0 0 chr11 58603293 58603325 -63240531 + (CTG)n Simple_repeat Simple_repeat 2 33 0 1 1032 431 173 9 26 chr11 58603323 58603436 -63240420 + CT-rich Low_complexity Low_complexity 2 112 0 1 1032 377 274 0 40 chr11 58603797 58603896 -63239960 + B1_Mur1 SINE Alu 52 146 -3 1 1032 611 294 181 9 chr11 58604094 58604784 -63239072 - L1MB3 LINE L1 -220 5963 5059 1 1032 374 253 104 37 chr11 58604798 58604962 -63238894 + MTD LTR MaLR 3 177 -242 1 1032 255 250 113 69 chr11 58605005 58605164 -63238692 + RMER21B LTR ERV1 296 461 -381 1 1032 419 177 0 8 chr11 58605532 58605663 -63238193 + CT-rich Low_complexity Low_complexity 2 131 0 1 1032 747 132 29 6 chr11 58605690 58605865 -63237991 + CT-rich Low_complexity Low_complexity 2 180 0 1 1032 935 130 0 104 chr11 58605865 58606028 -63237828 - B1_Mur4 SINE Alu 0 150 5 1 1032 366 297 25 0 chr11 58606079 58606197 -63237659 + MER57D LTR ERV1 154 274 -137 1 1032 1756 137 16 13 chr11 58607189 58607492 -63236364 + ORR1A2 LTR MaLR 16 319 -8 1 1032 451 351 39 53 chr11 58608602 58609035 -63234821 + MER31B LTR ERV1 9 435 -31 1 1032 847 102 65 24 chr11 58609308 58609465 -63234391 + L1_Mus4 LINE L1 6460 6625 -11 1 1032 252 0 0 0 chr11 58609465 58609493 -63234363 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 1 1032 847 102 65 24 chr11 58609493 58609505 -63234351 + L1_Mus4 LINE L1 6626 6636 0 1 1032 580 290 36 27 chr11 58609783 58610003 -63233853 - MIR SINE MIR -29 233 12 1 1032 675 217 0 32 chr11 58610207 58610364 -63233492 + Lx9 LINE L1 6711 6862 -782 1 1032 327 25 0 0 chr11 58610494 58610534 -63233322 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1032 1553 206 91 55 chr11 58610534 58611027 -63232829 - RLTR31A_Mm LTR ERVK -72 512 2 1 1032 1175 229 112 75 chr11 58611370 58611771 -63232085 + MTD LTR MaLR 4 419 0 1 1032 552 126 0 0 chr11 58611846 58611933 -63231923 + (TGGG)n Simple_repeat Simple_repeat 2 88 0 1 1032 3629 45 0 9 chr11 58613759 58614205 -63229651 - L1_Mus3 LINE L1 -281 6357 5916 1 1032 1718 100 12 4 chr11 58614205 58614536 -63229320 + L1_Mus3 LINE L1 6371 6638 0 1 1032 237 282 25 13 chr11 58615982 58616061 -63227795 - ID4 SINE ID -2 81 2 1 1032 444 252 0 9 chr11 58616066 58616182 -63227674 - PB1D10 SINE Alu -2 115 1 1 1032 21 0 0 0 chr11 58618731 58618752 -63225104 + AT_rich Low_complexity Low_complexity 1 21 0 1 1032 772 83 8 16 chr11 58618950 58619073 -63224783 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 1 1032 585 298 7 19 chr11 58619200 58619354 -63224502 + B3A SINE B2 5 156 -42 1 1032 405 0 0 0 chr11 58619363 58619408 -63224448 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1032 2677 189 59 23 chr11 58619530 58620205 -63223651 + RMER1B Other Other 178 857 -209 1 1032 3333 107 2 2 chr11 58620268 58620747 -63223109 - Lx2 LINE L1 -1 6996 6518 1 1032 1955 96 117 0 chr11 58621243 58621534 -63222322 + ORR1A4 LTR MaLR 5 329 0 1 1032 233 302 76 38 chr11 58621618 58621749 -63222107 + L1MA7 LINE L1 5873 6008 -283 1 1032 1840 122 174 0 chr11 58622043 58622354 -63221502 + ORR1B2 LTR MaLR 3 367 0 1 1032 482 0 0 17 chr11 58622600 58622659 -63221197 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 1032 6313 119 24 0 chr11 58623217 58624167 -63219689 - Lx2 LINE L1 -1 6996 6024 1 1032 803 117 0 27 chr11 58625128 58625312 -63218544 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 1 1032 546 155 6 24 chr11 58625313 58625478 -63218378 + (CATA)n Simple_repeat Simple_repeat 2 163 0 1 1032 593 189 317 0 chr11 58625612 58625776 -63218080 + B3 SINE B2 1 216 0 1 1032 582 253 15 65 chr11 58625976 58626175 -63217681 - B3A SINE B2 -7 191 3 1 1032 474 311 61 89 chr11 58626176 58626460 -63217396 - L1MA7 LINE L1 -250 6041 5768 1 1032 3034 73 2 15 chr11 58626460 58626861 -63216995 - MTA_Mm LTR MaLR 0 396 1 1 1032 474 314 54 79 chr11 58626861 58626993 -63216863 - L1MA7 LINE L1 -524 5767 5637 1 1032 506 155 0 10 chr11 58627197 58627295 -63216561 + GA-rich Low_complexity Low_complexity 3 99 0 1 1032 1206 78 0 16 chr11 58627295 58627478 -63216378 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1032 342 248 119 0 chr11 58627533 58627634 -63216222 + ID_B1 SINE B4 112 224 0 1 1032 21 71 0 0 chr11 58627758 58627800 -63216056 + AT_rich Low_complexity Low_complexity 1 42 0 1 1032 465 257 22 7 chr11 58628039 58628176 -63215680 + ERVL-E-int LTR ERVL 200 338 -5329 1 1032 266 294 18 44 chr11 58630196 58630310 -63213546 + CT-rich Low_complexity Low_complexity 3 113 0 1 1032 790 222 60 5 chr11 58632524 58632723 -63211133 - B3 SINE B2 0 216 7 1 1032 390 247 52 0 chr11 58632739 58632836 -63211020 - ID_B1 SINE B4 -7 217 116 1 1032 23 0 0 0 chr11 58633459 58633482 -63210374 + AT_rich Low_complexity Low_complexity 1 23 0 1 1032 599 254 0 0 chr11 58633525 58633651 -63210205 + B1F2 SINE Alu 18 143 -6 1 1032 219 254 0 40 chr11 58633791 58633865 -63209991 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1 1032 1743 168 86 8 chr11 58634587 58634947 -63208909 - ORR1B1 LTR MaLR 0 394 7 1 1032 219 176 50 88 chr11 58635181 58635310 -63208546 + B3 SINE B2 64 185 -10 1 1032 433 287 53 11 chr11 58635705 58635895 -63207961 + L1M2 LINE L1 4882 5079 -1064 2 1032 28326 127 20 19 chr11 58635898 58636430 -63207426 - L1VL1 LINE L1 -67 5816 5305 2 1032 1173 69 0 0 chr11 58636430 58636574 -63207282 - B1_Mm SINE Alu 0 147 4 2 1032 28326 127 20 19 chr11 58636574 58637236 -63206620 - L1VL1 LINE L1 -579 5304 4642 2 1032 210 37 0 0 chr11 58637236 58637263 -63206593 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2 1032 28326 132 28 25 chr11 58637263 58641429 -63202427 - L1VL1 LINE L1 -1242 4641 431 2 1032 354 45 0 0 chr11 58641969 58642013 -63201843 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1032 242 278 28 0 chr11 58642043 58642115 -63201741 - PB1D10 SINE Alu -14 103 30 2 1032 423 300 69 15 chr11 58642190 58642393 -63201463 + ERVL-E-int LTR ERVL 125 338 -5329 2 1032 198 156 0 0 chr11 58644136 58644181 -63199675 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1032 249 33 0 0 chr11 58644208 58644238 -63199618 + (CATA)n Simple_repeat Simple_repeat 3 32 0 2 1032 237 265 0 81 chr11 58645744 58645818 -63198038 + B3 SINE B2 110 177 -39 2 1032 979 242 5 5 chr11 58646851 58647059 -63196797 - B3 SINE B2 -7 209 2 2 1032 1012 244 105 28 chr11 58647063 58647455 -63196401 - L1MB2 LINE L1 -43 6128 5707 2 1032 274 263 14 2 chr11 58647576 58647679 -63196177 - L1MB2 LINE L1 -496 5693 5590 2 1032 705 248 68 15 chr11 58647870 58648075 -63195781 - B3 SINE B2 0 216 1 2 1032 362 263 63 0 chr11 58648085 58648180 -63195676 - ID_B1 SINE B4 -8 216 116 2 1032 352 277 28 28 chr11 58648750 58648891 -63194965 + L1MCa LINE L1 2221 2361 -4147 2 1032 660 240 1 8 chr11 58648892 58649035 -63194821 + B1_Mur2 SINE Alu 1 143 -7 2 1032 267 258 15 0 chr11 58649187 58649253 -63194603 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1032 1992 152 98 6 chr11 58649989 58650346 -63193510 - ORR1B1 LTR MaLR 0 394 5 2 1032 228 234 16 0 chr11 58650933 58650997 -63192859 - L1M2 LINE L1 -1270 4873 4809 2 1032 594 269 63 44 chr11 58651079 58651394 -63192462 + L1M2 LINE L1 4882 5202 -941 2 1032 339 25 0 0 chr11 58651997 58652037 -63191819 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1032 214 306 28 0 chr11 58652067 58652139 -63191717 - PB1D10 SINE Alu -14 103 30 2 1032 441 284 84 25 chr11 58652214 58652416 -63191440 + ERVL-E-int LTR ERVL 125 338 -5329 2 1032 266 307 30 52 chr11 58653209 58653343 -63190513 + B1F2 SINE Alu 6 136 -13 2 1032 266 328 0 0 chr11 58654083 58654214 -63189642 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 1032 722 242 68 15 chr11 58656627 58656832 -63187024 - B3 SINE B2 0 216 1 2 1032 351 274 63 0 chr11 58656842 58656937 -63186919 - ID_B1 SINE B4 -8 216 116 2 1032 368 287 120 0 chr11 58657489 58657639 -63186217 + L1MCa LINE L1 2194 2361 -4147 2 1032 546 262 9 8 chr11 58657640 58657775 -63186081 + B1_Mur2 SINE Alu 1 136 -14 2 1032 21 0 0 0 chr11 58657823 58657844 -63186012 + AT_rich Low_complexity Low_complexity 1 21 0 2 1032 265 250 16 0 chr11 58657923 58657987 -63185869 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1032 2205 151 34 5 chr11 58658697 58659076 -63184780 - ORR1B1 LTR MaLR 0 394 5 2 1032 213 108 0 0 chr11 58659203 58659240 -63184616 + B3 SINE B2 64 100 -116 2 1032 257 288 0 14 chr11 58659402 58659487 -63184369 + Lx8 LINE L1 5817 5935 -365 2 1032 360 0 0 0 chr11 58659520 58659560 -63184296 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1032 929 265 174 19 chr11 58659949 58660093 -63183763 + L1MA7 LINE L1 5383 5553 -738 2 1032 366 23 0 0 chr11 58660093 58660136 -63183720 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 2 1032 929 265 174 19 chr11 58660136 58660507 -63183349 + L1MA7 LINE L1 5554 5977 -314 2 1032 678 229 21 0 chr11 58664120 58664260 -63179596 - B1_Mur1 SINE Alu -6 143 1 2 1032 256 321 64 41 chr11 58664330 58664502 -63179354 + ERVL-E-int LTR ERVL 4823 4998 -669 2 1032 718 314 24 85 chr11 58664503 58664879 -63178977 - ORR1E LTR MaLR 0 359 7 2 1032 403 282 129 43 chr11 58664883 58665094 -63178762 + ERVL-E-int LTR ERVL 4992 5219 -448 2 1032 278 106 0 21 chr11 58665094 58665142 -63178714 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1032 403 282 129 43 chr11 58665142 58665208 -63178648 + ERVL-E-int LTR ERVL 5220 5293 -374 2 1032 1209 98 21 26 chr11 58665354 58665543 -63178313 - B2_Mm2 SINE B2 -7 188 1 2 1032 209 91 0 43 chr11 58665584 58665630 -63178226 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1032 1079 37 74 0 chr11 58665631 58665766 -63178090 - B1_Mm SINE Alu -2 145 1 2 1032 393 214 39 39 chr11 58667775 58667877 -63175979 + MurSatRep1 Unknown Unknown 627 728 -1409 2 1032 809 256 34 15 chr11 58668060 58668266 -63175590 - B3 SINE B2 -6 210 1 2 1032 204 171 0 0 chr11 58668274 58668300 -63175556 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 2 1032 847 169 15 0 chr11 58668300 58668436 -63175420 - B1_Mur2 SINE Alu -10 139 2 2 1032 204 171 0 0 chr11 58668436 58668444 -63175412 + (TCTG)n Simple_repeat Simple_repeat 1 8 0 2 1032 567 137 56 11 chr11 58668683 58668797 -63175059 + B1_Mur1 SINE Alu 6 134 -15 2 1032 423 0 0 0 chr11 58668805 58668852 -63175004 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1032 359 261 11 0 chr11 58669054 58669142 -63174714 - B3A SINE B2 -107 91 3 2 1032 837 246 28 19 chr11 58669278 58669489 -63174367 - B3 SINE B2 -2 214 2 2 1032 2326 189 89 4 chr11 58669793 58670277 -63173579 - MT2A LTR ERVL -8 525 1 2 1032 987 25 0 0 chr11 58671436 58671554 -63172302 + B1_Mus2 SINE Alu 30 147 0 2 1032 264 304 26 26 chr11 58672843 58672958 -63170898 + MMSAT4 Satellite Satellite 31 145 -23 2 1032 237 361 0 0 chr11 58673263 58673396 -63170460 + MMSAT4 Satellite Satellite 31 163 -5 2 1032 1150 62 14 0 chr11 58675837 58675982 -63167874 + B1_Mm SINE Alu 1 147 0 2 1032 207 0 0 0 chr11 58675982 58676005 -63167851 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1032 297 0 0 0 chr11 58676435 58676468 -63167388 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1032 745 114 14 71 chr11 58677174 58677315 -63166541 + ORR1C2 LTR MaLR 1 133 -251 2 1032 252 249 125 121 chr11 58677402 58677626 -63166230 - ORR1A4 LTR MaLR -18 311 87 2 1032 2060 146 52 23 chr11 58677869 58678212 -63165644 + MTB_Mm LTR MaLR 1 353 -54 2 1032 567 200 74 57 chr11 58678362 58678537 -63165319 + B3A SINE B2 3 180 -18 2 1032 736 197 7 33 chr11 58678565 58678717 -63165139 + B1_Mur2 SINE Alu 1 148 -1 2 1032 532 272 174 0 chr11 58678737 58678921 -63164935 + B3 SINE B2 1 216 0 2 1032 545 301 30 79 chr11 58678934 58679136 -63164720 + B3A SINE B2 2 193 -5 2 1032 441 259 18 147 chr11 58679357 58679520 -63164336 + ID_B1 SINE B4 80 221 -3 2 1032 911 254 0 14 chr11 58679659 58679875 -63163981 + B3 SINE B2 1 213 -3 2 1032 1211 54 0 0 chr11 58679887 58680034 -63163822 + B1_Mm SINE Alu 1 147 0 2 1032 772 223 58 0 chr11 58680088 58680276 -63163580 - B3 SINE B2 -15 201 3 2 1032 528 122 0 0 chr11 58680288 58680370 -63163486 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2 1032 350 161 145 0 chr11 58680438 58680500 -63163356 - B1_Mus2 SINE Alu -72 75 5 2 1032 331 250 25 38 chr11 58680500 58680517 -63163339 - MT2B LTR ERVL -369 232 155 2 1032 263 306 64 18 chr11 58681153 58681263 -63162593 - RMER15 LTR ERVL -9 566 452 2 1032 224 301 41 66 chr11 58683147 58683268 -63160588 - PB1D9 SINE Alu -2 118 1 2 1032 449 282 86 37 chr11 58683268 58683326 -63160530 - B4A SINE B4 -203 89 24 2 1032 576 319 40 25 chr11 58684097 58684419 -63159437 + ERVL-B4-int LTR ERVL 4471 4797 -917 2 1032 291 335 48 18 chr11 58684416 58684583 -63159273 + ERVL-int LTR ERVL 3890 4061 -1696 2 1032 394 288 20 11 chr11 58684615 58684795 -63159061 + ERVL-int LTR ERVL 4808 4993 -721 2 1032 663 217 148 26 chr11 58685102 58685291 -63158565 - B3 SINE B2 0 216 5 2 1032 414 0 0 0 chr11 58685311 58685357 -63158499 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1032 230 306 0 46 chr11 58685376 58685441 -63158415 - B4A SINE B4 0 292 231 2 1032 263 330 21 21 chr11 58685545 58685641 -63158215 - MER77 LTR ERVL -1 606 511 2 1032 253 357 61 91 chr11 58685673 58685969 -63157887 - MER77 LTR ERVL -189 418 132 2 1032 621 184 169 0 chr11 58686295 58686431 -63157425 - RSINE1 SINE B4 -4 161 3 2 1032 270 0 0 0 chr11 58686571 58686601 -63157255 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1032 279 190 0 0 chr11 58686607 58686665 -63157191 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1032 287 191 0 56 chr11 58686666 58686738 -63157118 - MER4B-int LTR ERV1 -5563 1195 1128 2 1032 191 0 0 93 chr11 58687112 58687155 -63156701 + (CCCCCA)n Simple_repeat Simple_repeat 2 40 0 2 1032 482 282 121 21 chr11 58687493 58687755 -63156101 - Lx8 LINE L1 -195 5961 5641 2 1032 887 74 32 10 chr11 58687789 58687922 -63155934 - B1_Mm SINE Alu -2 145 32 2 1032 358 258 16 24 chr11 58687929 58688056 -63155800 - L1M2 LINE L1 -640 5657 5532 2 1032 832 35 267 0 chr11 58688134 58688250 -63155606 - B1_Mus2 SINE Alu 0 147 1 2 1032 265 307 195 8 chr11 58688252 58688543 -63155313 - L1M2 LINE L1 -874 5426 5077 2 1032 476 274 167 30 chr11 58688576 58689006 -63154850 + L1_Mur3 LINE L1 4002 4498 -1382 2 1032 849 88 0 0 chr11 58689075 58689212 -63154644 + (TG)n Simple_repeat Simple_repeat 2 138 0 2 1032 333 281 57 19 chr11 58689229 58689334 -63154522 - PB1D7 SINE Alu -8 112 4 2 1032 359 204 114 0 chr11 58689703 58689791 -63154065 - B1_Mur2 SINE Alu -50 99 2 2 1032 393 214 39 39 chr11 58690209 58690311 -63153545 + MurSatRep1 Unknown Unknown 627 728 -1409 2 1032 245 361 54 27 chr11 58690481 58690641 -63153215 - L1MA6 LINE L1 -6 6294 6126 2 1032 270 0 0 0 chr11 58690641 58690671 -63153185 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1032 1000 236 10 0 chr11 58690671 58690870 -63152986 - B3 SINE B2 -14 202 2 2 1032 245 361 54 27 chr11 58690870 58691004 -63152852 - L1MA6 LINE L1 -175 6125 5992 2 1032 302 298 8 24 chr11 58691093 58691217 -63152639 - L1MA6 LINE L1 -480 5820 5699 2 1032 342 0 0 0 chr11 58691231 58691269 -63152587 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1032 265 75 0 0 chr11 58693282 58693322 -63150534 - B3A SINE B2 -158 40 1 3 1032 399 297 13 14 chr11 58694356 58694809 -63149047 + MMSAT4 Satellite Satellite 1 452 -5 3 1032 755 158 31 0 chr11 58696822 58696949 -63146907 + B1_Mur1 SINE Alu 1 131 -18 3 1032 1079 110 0 0 chr11 58696953 58697099 -63146757 - B1_Mus1 SINE Alu -1 147 2 3 1032 230 301 20 61 chr11 58697153 58697252 -63146604 + MER20 DNA MER1_type 42 136 -83 3 1032 474 220 227 35 chr11 58697272 58697470 -63146386 - RMER15 LTR ERVL -15 560 325 3 1032 413 272 50 50 chr11 58697512 58697671 -63146185 - RMER15 LTR ERVL -416 159 1 3 1032 345 24 0 0 chr11 58698187 58698229 -63145627 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1032 603 254 0 44 chr11 58699252 58699388 -63144468 + RSINE1 SINE B4 5 134 -31 3 1032 639 221 64 0 chr11 58699517 58699657 -63144199 - B1_Mur2 SINE Alu 0 149 1 3 1032 1377 204 139 42 chr11 58700149 58700486 -63143370 - ORR1D2 LTR MaLR 0 370 1 3 1032 2798 218 79 51 chr11 58700486 58701197 -63142659 - ORR1D2-int LTR MaLR 0 1370 667 3 1032 438 137 47 14 chr11 58701186 58701276 -63142580 + B2_Mm2 SINE B2 58 159 -57 3 1032 441 0 0 0 chr11 58701285 58701334 -63142522 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1032 896 144 204 6 chr11 58701385 58701566 -63142290 + MTD LTR MaLR 201 417 -2 3 1032 187 284 40 13 chr11 58701597 58701672 -63142184 - L4 LINE RTE -1775 254 178 3 1032 263 278 13 65 chr11 58702180 58702257 -63141599 - ID4_ SINE ID -10 73 1 3 1032 425 331 45 8 chr11 58702359 58702493 -63141363 - MER20 DNA MER1_type -55 164 26 3 1032 540 0 0 0 chr11 58703009 58703069 -63140787 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1032 262 323 16 16 chr11 58703446 58703572 -63140284 - MMSAT4 Satellite Satellite -14 154 29 3 1032 386 302 18 18 chr11 58703606 58704158 -63139698 - MMSAT4 Satellite Satellite -6 552 1 3 1032 374 0 22 0 chr11 58705152 58705198 -63138658 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1032 27 29 0 0 chr11 58705413 58705447 -63138409 + AT_rich Low_complexity Low_complexity 1 34 0 3 1032 443 240 100 0 chr11 58706753 58706853 -63137003 + PB1 SINE Alu 17 126 -1 3 1032 320 264 14 0 chr11 58706854 58706926 -63136930 + ID4 SINE ID 1 73 -10 3 1032 1221 28 14 0 chr11 58706962 58707106 -63136750 + B1_Mus2 SINE Alu 2 147 0 3 1032 201 74 0 0 chr11 58707186 58707213 -63136643 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 3 1032 1244 26 4 39 chr11 58707394 58707629 -63136227 + (CA)n Simple_repeat Simple_repeat 1 226 0 3 1032 299 33 32 48 chr11 58707789 58707852 -63136004 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 3 1032 753 136 16 41 chr11 58707853 58707976 -63135880 - B1_Mur2 SINE Alu -12 137 18 3 1032 489 237 105 37 chr11 58708006 58708063 -63135793 - B2_Mm2 SINE B2 -19 176 125 3 1032 1472 156 88 96 chr11 58708063 58708459 -63135397 + RLTR9C LTR ERVK 1 393 0 3 1032 567 166 67 13 chr11 58708459 58708563 -63135293 - B3 SINE B2 -71 124 4 3 1032 189 0 0 0 chr11 58708570 58708591 -63135265 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1032 484 280 20 20 chr11 58708699 58708845 -63135011 + B1F1 SINE Alu 3 148 -1 3 1032 370 173 111 0 chr11 58708849 58708930 -63134926 + B4A SINE B4 125 214 -78 3 1032 1373 163 201 10 chr11 58708938 58709247 -63134609 + MTD LTR MaLR 10 377 -42 3 1032 211 159 22 22 chr11 58709352 58709397 -63134459 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1032 238 269 88 59 chr11 58709587 58709757 -63134099 + L1MA4 LINE L1 2408 2582 -4267 3 1032 264 365 47 0 chr11 58709757 58709864 -63133992 + MTEa LTR MaLR 1 112 -267 3 1032 910 283 42 45 chr11 58709864 58710208 -63133648 + MT2A LTR ERVL 128 514 -40 3 1032 411 113 0 0 chr11 58710208 58710270 -63133586 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1032 308 294 185 53 chr11 58710270 58710288 -63133568 + MT2A LTR ERVL 515 529 -25 3 1032 1021 158 229 0 chr11 58710288 58710471 -63133385 - URR1B DNA MER1_type 0 225 1 3 1032 308 294 185 53 chr11 58710471 58710495 -63133361 + MT2A LTR ERVL 530 553 -1 3 1032 273 291 175 47 chr11 58710498 58711410 -63132446 + L1MA4 LINE L1 2594 3628 -3217 3 1032 1665 69 0 0 chr11 58711412 58711629 -63132227 + L1_Mm LINE L1 4071 4287 -1596 3 1032 285 29 0 0 chr11 58712001 58712035 -63131821 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1032 814 273 89 110 chr11 58712042 58712634 -63131222 + L1MA4 LINE L1 5229 5778 -1067 3 1032 332 223 52 26 chr11 58712634 58712749 -63131107 - PB1 SINE Alu -7 120 3 3 1032 814 301 111 60 chr11 58712749 58713391 -63130465 + L1MA4 LINE L1 5779 6492 -510 3 1032 849 142 101 56 chr11 58713391 58713570 -63130286 + B2_Mm2 SINE B2 2 188 -7 3 1032 797 322 127 23 chr11 58713570 58713947 -63129909 + L1MA4 LINE L1 6493 6906 -96 3 1032 393 214 39 39 chr11 58714077 58714179 -63129677 - MurSatRep1 Unknown Unknown -1409 728 627 3 1032 336 348 25 46 chr11 58714752 58714948 -63128908 - MLT1A0 LTR MaLR -99 266 75 3 1032 288 286 177 41 chr11 58715548 58715887 -63127969 - L1M4 LINE L1 -1697 4449 4065 3 1032 591 221 57 0 chr11 58715955 58716077 -63127779 - RSINE1 SINE B4 -32 133 5 3 1032 366 230 160 0 chr11 58717904 58718004 -63125852 - PB1D7 SINE Alu 0 120 5 3 1032 363 44 0 0 chr11 58718168 58718213 -63125643 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1032 226 292 54 81 chr11 58718334 58718483 -63125373 + RMER21B LTR ERV1 38 182 -660 3 1032 734 226 126 43 chr11 58718508 58718762 -63125094 + RMER21B LTR ERV1 293 567 -275 3 1032 4307 214 57 80 chr11 58718815 58719989 -63123867 + RodERV21-int LTR ERV1 3 1149 -3842 3 1 1815 145 123 23 chr11 58719992 58720552 -63123304 + RLTR26 LTR ERVK 3 629 -13 3 1033 1514 57 0 35 chr11 58720552 58720752 -63123104 + B2_Mm1t SINE B2 1 193 0 3 1033 1410 148 42 49 chr11 58720752 58720775 -63123081 + RLTR26 LTR ERVK 630 642 0 3 1033 7312 202 30 66 chr11 58720775 58721484 -63122372 + RodERV21-int LTR ERV1 1145 1865 -3126 3 1033 1236 48 0 0 chr11 58721484 58721631 -63122225 + B1_Mm SINE Alu 1 147 0 3 1033 7312 202 30 66 chr11 58721631 58722533 -63121323 + RodERV21-int LTR ERV1 1866 2697 -2294 3 1033 810 39 0 0 chr11 58722570 58722672 -63121184 + (TCTCCC)n Simple_repeat Simple_repeat 5 106 0 3 1033 682 324 106 32 chr11 58723084 58723425 -63120431 + RMER5 LTR ERV1 167 532 -2 3 1033 305 310 53 0 chr11 58723548 58723661 -63120195 + L1_Mur3 LINE L1 5155 5273 -867 3 1033 396 279 121 52 chr11 58723690 58723715 -63120141 + L1_Mur3 LINE L1 5350 5375 -922 3 1033 180 0 0 0 chr11 58723715 58723735 -63120121 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1033 428 281 119 51 chr11 58723735 58723999 -63119857 + L1_Mur3 LINE L1 5351 5640 -657 3 1033 264 313 91 0 chr11 58724102 58724119 -63119737 - PB1D7 SINE Alu -9 111 4 3 1033 266 284 49 12 chr11 58724119 58724201 -63119655 - ID_B1 SINE B4 -55 169 85 3 1033 326 324 7 14 chr11 58724202 58724340 -63119516 - RMER5 LTR ERV1 -39 495 359 3 1033 695 245 19 0 chr11 58724340 58724495 -63119361 + RSINE1 SINE B4 2 159 -6 3 1033 525 189 0 11 chr11 58725636 58725727 -63118129 - PB1D9 SINE Alu 0 120 31 3 1033 183 156 0 0 chr11 58725727 58725759 -63118097 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1033 1436 78 16 0 chr11 58725778 58725969 -63117887 - B2_Mm2 SINE B2 -1 194 1 3 1033 322 256 46 58 chr11 58726010 58726128 -63117728 + MTEa LTR MaLR 6 126 -253 3 1033 327 217 0 0 chr11 58726242 58726302 -63117554 + ID_B1 SINE B4 164 223 -1 3 1033 277 180 76 33 chr11 58726310 58726402 -63117454 - RCHARR1 DNA MER1_type -136 838 743 3 1033 663 212 0 0 chr11 58726414 58726546 -63117310 + B1_Mur4 SINE Alu 19 150 0 3 1033 193 0 61 30 chr11 58726557 58726590 -63117266 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1033 410 291 97 32 chr11 58726604 58726789 -63117067 - RCHARR1 DNA MER1_type -586 388 192 3 1033 248 296 125 7 chr11 58728559 58728695 -63115161 - L1MB5 LINE L1 -9 6165 6014 3 1033 425 245 20 0 chr11 58729117 58729215 -63114641 - B3A SINE B2 -97 101 2 3 1033 569 266 84 101 chr11 58729540 58729800 -63114056 - L1MA6 LINE L1 -310 5990 5705 3 1033 1053 107 0 45 chr11 58729800 58729956 -63113900 + B1_Mur4 SINE Alu 2 150 0 3 1033 569 266 84 101 chr11 58729956 58730110 -63113746 - L1MA6 LINE L1 -596 5704 5583 3 1033 2489 92 78 11 chr11 58730112 58730485 -63113371 - RMER10B LTR ERVL 0 398 1 3 1033 1139 83 0 0 chr11 58730720 58730865 -63112991 + B1_Mm SINE Alu 3 147 0 3 1033 450 0 0 0 chr11 58732985 58733035 -63110821 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1033 212 321 11 51 chr11 58733281 58733458 -63110398 + GA-rich Low_complexity Low_complexity 1 170 0 3 1033 606 28 0 0 chr11 58733548 58733620 -63110236 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 3 1033 746 157 195 38 chr11 58734418 58734603 -63109253 - B3 SINE B2 -2 214 1 3 1033 1712 166 102 20 chr11 58734887 58735011 -63108845 - ORR1C2 LTR MaLR -11 368 251 3 1033 189 0 0 0 chr11 58735011 58735032 -63108824 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 3 1033 1712 150 115 3 chr11 58735032 58735245 -63108611 - ORR1C2 LTR MaLR -134 250 3 3 1033 313 253 24 0 chr11 58735250 58735333 -63108523 - L1MC LINE L1 -503 5830 5746 3 1033 243 0 0 0 chr11 58735388 58735415 -63108441 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1033 243 159 68 0 chr11 58735424 58735468 -63108388 - B1_Mur1 SINE Alu -23 126 80 3 1033 288 250 124 9 chr11 58735467 58735580 -63108276 - MLT1A0 LTR MaLR -238 127 2 3 1033 342 0 0 0 chr11 58735665 58735703 -63108153 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1033 364 289 125 77 chr11 58736195 58736547 -63107309 - MLT1A1 LTR MaLR -6 402 3 3 1033 322 306 42 85 chr11 58737572 58737761 -63106095 + MLT1B LTR MaLR 7 187 -203 3 1033 969 26 0 0 chr11 58737944 58738060 -63105796 + (TATG)n Simple_repeat Simple_repeat 3 118 0 3 1033 294 261 21 11 chr11 58738115 58738217 -63105639 + CT-rich Low_complexity Low_complexity 1 103 0 3 1033 770 232 42 21 chr11 58738217 58738241 -63105615 - B3A SINE B2 -5 193 169 3 1033 495 0 0 0 chr11 58738241 58738296 -63105560 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1033 770 232 42 21 chr11 58738296 58738460 -63105396 - B3A SINE B2 -30 168 1 3 1033 210 303 23 69 chr11 58738460 58738493 -63105363 + polypyrimidine Low_complexity Low_complexity 4 35 0 3 1033 445 311 173 64 chr11 58738973 58739348 -63104508 - MLT1C LTR MaLR -46 421 6 3 1033 555 16 0 0 chr11 58739658 58739722 -63104134 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1033 350 239 0 0 chr11 58739855 58739922 -63103934 - B1_Mus1 SINE Alu -81 67 1 3 1033 289 287 85 0 chr11 58739956 58740050 -63103806 - B3 SINE B2 0 216 115 3 1033 513 134 26 0 chr11 58740012 58740130 -63103726 + B1_Mus2 SINE Alu 11 150 0 3 1033 522 0 0 0 chr11 58740145 58740203 -63103653 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1033 450 0 0 0 chr11 58740203 58740253 -63103603 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1033 282 263 16 0 chr11 58740253 58740315 -63103541 - B3A SINE B2 -67 149 87 4 1033 21 36 0 0 chr11 58740627 58740655 -63103201 + AT_rich Low_complexity Low_complexity 1 28 0 4 1033 180 0 0 0 chr11 58740754 58740774 -63103082 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1033 864 228 16 52 chr11 58740776 58740970 -63102886 - B3 SINE B2 -25 191 5 4 1033 208 277 0 0 chr11 58742489 58742536 -63101320 + C-rich Low_complexity Low_complexity 1 47 0 4 1033 225 0 0 0 chr11 58744273 58744298 -63099558 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1033 534 229 136 0 chr11 58744300 58744418 -63099438 - B1_Mur1 SINE Alu -15 134 1 4 1033 261 294 72 40 chr11 58745445 58745597 -63098259 + MER31B LTR ERV1 146 302 -164 4 1033 324 229 107 25 chr11 58748130 58748251 -63095605 + MLT1A0 LTR MaLR 227 357 -8 4 1033 198 0 0 0 chr11 58748338 58748360 -63095496 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1033 1211 61 0 0 chr11 58748360 58748507 -63095349 - B1_Mus1 SINE Alu 0 148 2 4 1033 358 241 69 35 chr11 58748516 58748632 -63095224 + MER34 LTR ERV1 316 435 -107 4 1033 303 330 9 48 chr11 58748666 58748771 -63095085 - MER2 DNA MER2_type -25 320 220 4 1033 180 0 0 0 chr11 58750062 58750082 -63093774 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1033 635 221 175 13 chr11 58750153 58750382 -63093474 + MLT1A0 LTR MaLR 18 283 -82 4 1033 23 0 0 0 chr11 58752033 58752056 -63091800 + GC_rich Low_complexity Low_complexity 1 23 0 4 1033 21 89 0 0 chr11 58752266 58752322 -63091534 + GC_rich Low_complexity Low_complexity 1 56 0 4 1033 22 35 0 0 chr11 58752404 58752433 -63091423 + GC_rich Low_complexity Low_complexity 1 29 0 4 1033 2251 82 41 9 chr11 58753031 58753350 -63090506 + ORR1A4 LTR MaLR 1 329 0 4 1033 449 273 82 20 chr11 58753394 58753540 -63090316 + MER2 DNA MER2_type 89 243 -102 4 1033 729 234 15 0 chr11 58753547 58753684 -63090172 + B1_Mur1 SINE Alu 1 139 -10 4 1033 423 0 0 0 chr11 58753684 58753731 -63090125 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1033 200 175 16 0 chr11 58753732 58753795 -63090061 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1033 284 257 26 26 chr11 58753833 58753909 -63089947 + MER2 DNA MER2_type 256 331 -14 4 1033 33 0 0 0 chr11 58753920 58753953 -63089903 + AT_rich Low_complexity Low_complexity 1 33 0 4 1033 217 245 19 0 chr11 58754026 58754079 -63089777 - ID4 SINE ID -6 77 24 4 1033 287 203 79 112 chr11 58754061 58754150 -63089706 + MT2B LTR ERVL 166 251 -350 4 1033 466 226 27 0 chr11 58754070 58754167 -63089689 + PB1D10 SINE Alu 13 112 -5 4 1033 259 284 0 15 chr11 58754416 58754484 -63089372 - ID4 SINE ID -14 69 3 4 1033 990 231 49 5 chr11 58754659 58754863 -63088993 - B3 SINE B2 0 216 4 4 1033 606 279 33 38 chr11 58754946 58755129 -63088727 - B3A SINE B2 -16 182 1 4 1033 787 171 13 33 chr11 58755284 58755422 -63088434 + B1_Mus1 SINE Alu 1 138 -10 4 1033 216 0 0 0 chr11 58755422 58755446 -63088410 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 1033 787 171 13 33 chr11 58755446 58755458 -63088398 + B1_Mus1 SINE Alu 139 148 0 4 1033 373 301 147 20 chr11 58756199 58756396 -63087460 - RMER15 LTR ERVL -18 557 336 4 1033 383 38 19 0 chr11 58756716 58756769 -63087087 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 1033 355 279 16 32 chr11 58758880 58759006 -63084850 - RSINE1 SINE B4 -38 127 4 4 1033 236 247 23 23 chr11 58759006 58759093 -63084763 + CT-rich Low_complexity Low_complexity 4 90 0 4 1033 228 67 0 0 chr11 58759304 58759334 -63084522 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 4 1033 216 0 0 0 chr11 58759472 58759496 -63084360 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1033 393 235 8 105 chr11 58759750 58759883 -63083973 - MER31A LTR ERV1 -29 456 337 4 1033 204 45 43 43 chr11 58760131 58760178 -63083678 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1033 888 154 21 0 chr11 58760182 58760325 -63083531 - B1_Mus1 SINE Alu 0 148 3 4 1033 25 0 0 0 chr11 58760417 58760442 -63083414 + AT_rich Low_complexity Low_complexity 1 25 0 4 1033 837 134 0 90 chr11 58760919 58761075 -63082781 - B1_Mus1 SINE Alu -6 142 1 4 1033 648 0 0 0 chr11 58761082 58761154 -63082702 + (TTTTG)n Simple_repeat Simple_repeat 2 73 0 4 1033 190 336 31 78 chr11 58761478 58761607 -63082249 - MIRm SINE MIR -90 186 64 4 1033 229 254 111 67 chr11 58763116 58763251 -63080605 + MER49 LTR ERV1 753 893 -30 4 1033 555 293 33 24 chr11 58764584 58764797 -63079059 + B3 SINE B2 2 216 0 4 1033 575 243 27 14 chr11 58764927 58765073 -63078783 - B1F2 SINE Alu -1 148 1 4 1033 386 250 46 41 chr11 58765111 58765247 -63078609 + B1_Mus1 SINE Alu 8 149 -1 4 1033 3136 59 10 3 chr11 58765588 58765977 -63077879 - MTA_Mm LTR MaLR -4 392 1 4 1033 21 36 0 0 chr11 58766291 58766319 -63077537 + AT_rich Low_complexity Low_complexity 1 28 0 4 1033 966 87 13 26 chr11 58766730 58766884 -63076972 + L1_Mus3 LINE L1 6482 6633 -5 4 1033 23 33 0 0 chr11 58769562 58769592 -63074264 + AT_rich Low_complexity Low_complexity 1 30 0 4 1033 287 273 75 31 chr11 58770277 58770446 -63073410 + L1M4 LINE L1 5631 5809 -365 4 1033 467 288 146 25 chr11 58770546 58770785 -63073071 + B4 SINE B4 2 269 -23 4 1033 726 262 31 56 chr11 58771432 58771719 -63072137 + L1MA9 LINE L1 5589 5868 -444 4 1033 444 312 70 78 chr11 58771720 58771977 -63071879 - MER2 DNA MER2_type 0 345 91 4 1033 230 242 16 0 chr11 58772700 58772762 -63071094 + L1M3 LINE L1 5424 5486 -682 4 1033 28 29 0 0 chr11 58773325 58773360 -63070496 + AT_rich Low_complexity Low_complexity 1 35 0 4 1033 21 0 0 0 chr11 58774382 58774403 -63069453 + AT_rich Low_complexity Low_complexity 1 21 0 4 1033 423 0 0 0 chr11 58774447 58774494 -63069362 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1033 232 291 15 45 chr11 58774584 58774717 -63069139 - L1MA5A LINE L1 -355 5942 5814 4 1033 453 202 0 33 chr11 58774751 58774843 -63069013 - PB1D9 SINE Alu -7 113 25 4 1033 227 266 85 124 chr11 58776820 58776949 -63066907 - MT2B LTR ERVL -303 298 175 4 1033 557 159 103 34 chr11 58776843 58776960 -63066896 - B1_Mur4 SINE Alu -25 125 1 4 1033 202 132 0 73 chr11 58778751 58778792 -63065064 + polypurine Low_complexity Low_complexity 1 38 0 4 1033 192 77 0 0 chr11 58779485 58779511 -63064345 + (GCTTG)n Simple_repeat Simple_repeat 3 28 0 4 1033 189 0 0 0 chr11 58779518 58779539 -63064317 + (TC)n Simple_repeat Simple_repeat 1 21 0 4 1033 1382 70 26 21 chr11 58779635 58779824 -63064032 - B2_Mm1a SINE B2 -3 190 1 4 1033 445 319 12 102 chr11 58779824 58780079 -63063777 - RLTR42-int LTR ERVK -4134 1388 1157 4 1033 447 233 61 104 chr11 58780610 58780725 -63063131 - PB1 SINE Alu -5 112 3 4 1033 1068 110 5 135 chr11 58780759 58780959 -63062897 + B2_Mm1t SINE B2 2 175 -18 4 1033 464 275 38 0 chr11 58780963 58781104 -63062752 - B3 SINE B2 -1 215 71 4 1033 397 320 47 16 chr11 58781403 58781530 -63062326 + B1_Mur2 SINE Alu 10 140 -9 4 1033 423 0 0 0 chr11 58782502 58782549 -63061307 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1033 305 265 126 50 chr11 58782683 58782842 -63061014 - MLT1A1 LTR MaLR -224 184 14 4 1033 544 293 192 9 chr11 58783030 58783254 -63060602 + Tigger7 DNA MER2_type 7 271 -2220 4 1033 1002 217 59 30 chr11 58785680 58786017 -63057839 - RLTR15 LTR ERVK -12 347 1 4 1033 2413 199 85 58 chr11 58786101 58786821 -63057035 - MYSERV6-int LTR ERVK -351 8608 7870 4 1033 1203 84 72 0 chr11 58786824 58786991 -63056865 + B2_Mm1t SINE B2 2 180 -13 4 1033 305 113 56 5 chr11 58787037 58787099 -63056757 + B2_Mm2 SINE B2 47 109 -107 4 1033 304 212 12 12 chr11 58787129 58787210 -63056646 - MYSERV-int LTR ERVK -1136 5414 5334 4 1033 292 329 95 42 chr11 58787212 58787380 -63056476 - RMER4A LTR ERVK -33 433 257 4 1033 596 327 90 46 chr11 58787382 58787679 -63056177 - MYSERV-int LTR ERVK -1420 5130 4813 4 1033 1945 112 19 203 chr11 58787679 58788206 -63055650 - RLTR23 LTR ERV1 0 430 1 4 1033 596 327 90 46 chr11 58788206 58788475 -63055381 - MYSERV-int LTR ERVK -1738 4812 4539 4 1033 1001 223 66 4 chr11 58788451 58788708 -63055148 - MYSERV6-int LTR ERVK -7494 1465 1193 4 1033 358 312 13 6 chr11 58788694 58788852 -63055004 - MYSERV6-int LTR ERVK -7211 1748 1590 4 1033 266 332 91 41 chr11 58788962 58789182 -63054674 - RMER6-int LTR ERVK -3509 1751 1521 4 1033 990 311 76 22 chr11 58789235 58790046 -63053810 - RMER6-int LTR ERVK -1807 1370 58 4 1033 335 315 142 24 chr11 58790047 58790252 -63053604 - L1M4 LINE L1 -3178 2968 2740 4 1033 460 275 94 62 chr11 58791107 58791363 -63052493 - RLTR15 LTR ERVK -86 273 10 4 1033 258 299 171 6 chr11 58792717 58792875 -63050981 - MER34A LTR ERV1 -8 563 380 4 1033 503 272 57 47 chr11 58793485 58793678 -63050178 + B3A SINE B2 1 195 -3 4 1033 463 254 222 49 chr11 58794040 58794243 -63049613 - MLT1A0 LTR MaLR -59 306 69 4 1033 540 0 0 0 chr11 58794926 58794986 -63048870 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1033 389 382 125 0 chr11 58796098 58796378 -63047478 - MER2 DNA MER2_type -5 340 26 4 1033 1148 67 0 43 chr11 58796876 58797064 -63046792 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1033 425 111 28 0 chr11 58797064 58797136 -63046720 + (CCCCCT)n Simple_repeat Simple_repeat 2 75 0 4 1033 319 295 0 32 chr11 58797787 58797913 -63045943 - L1MA6 LINE L1 -33 6267 6146 4 1033 341 329 9 13 chr11 58799046 58799177 -63044679 - MLT1B LTR MaLR 0 467 262 4 1033 240 216 64 64 chr11 58799440 58799534 -63044322 - MLT1B LTR MaLR -312 96 3 4 1033 1957 255 173 7 chr11 58800876 58801617 -63042239 - Lx8 LINE L1 -301 7172 6309 4 1033 631 341 159 12 chr11 58802572 58803062 -63040794 - MER21B LTR ERV1 -204 659 98 5 1033 731 100 59 85 chr11 58806012 58806165 -63037691 - URR1A DNA MER1_type 0 226 78 5 1033 289 212 15 15 chr11 58806261 58806328 -63037528 - B1F SINE Alu -2 147 81 5 1033 304 193 0 57 chr11 58806392 58806480 -63037376 - L1_Rod LINE L1 -622 5225 5143 5 1033 198 0 0 0 chr11 58808144 58808166 -63035690 + (CGGGG)n Simple_repeat Simple_repeat 3 24 0 5 1033 191 351 17 17 chr11 58811165 58811281 -63032575 + L3 LINE CR1 4207 4322 -167 5 1033 183 42 0 0 chr11 58816585 58816609 -63027247 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 1033 207 0 0 0 chr11 58824124 58824147 -63019709 + (CTG)n Simple_repeat Simple_repeat 1 23 0 5 1033 1880 113 53 7 chr11 58825145 58825448 -63018408 + ORR1A2 LTR MaLR 1 317 -10 5 1033 279 0 0 0 chr11 58828818 58828849 -63015007 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 5 1033 207 185 84 0 chr11 58829144 58829188 -63014668 + MIRc SINE MIR 121 170 -92 5 1033 209 312 91 9 chr11 58829298 58829408 -63014448 - MIRc SINE MIR -77 191 73 5 1033 247 384 35 40 chr11 58829922 58830150 -63013706 + RLTR21 LTR ERVK 1087 1313 -259 5 1033 402 331 12 75 chr11 58831385 58831545 -63012311 + RMER15 LTR ERVL 386 535 -40 5 1033 1304 287 77 74 chr11 58832032 58832811 -63011045 + RMER15-int LTR ERVL 4158 4996 -3 5 1033 626 280 52 65 chr11 58832916 58833204 -63010652 + RMER15 LTR ERVL 290 561 -14 5 1033 876 246 22 0 chr11 58833256 58833439 -63010417 - B3A SINE B2 -11 187 1 5 1033 189 85 40 60 chr11 58836006 58836056 -63007800 + CT-rich Low_complexity Low_complexity 3 51 0 5 1033 405 39 0 0 chr11 58836336 58836387 -63007469 + (TCC)n Simple_repeat Simple_repeat 1 51 0 5 1033 189 0 0 0 chr11 58836589 58836610 -63007246 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1033 226 321 8 51 chr11 58838258 58838376 -63005480 + MLT1C LTR MaLR 336 448 -19 5 1033 269 365 122 0 chr11 58838420 58838576 -63005280 + HERVL40-int LTR ERVL 2558 2732 -2798 5 1033 216 235 0 0 chr11 58839353 58839421 -63004435 + (TATG)n Simple_repeat Simple_repeat 4 71 0 5 1033 261 0 0 0 chr11 58839524 58839553 -63004303 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1033 519 17 0 0 chr11 58839553 58839612 -63004244 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1033 459 52 0 0 chr11 58839735 58839793 -63004063 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1033 545 356 138 16 chr11 58839896 58840281 -63003575 + MER77 LTR ERVL 163 594 -13 5 1033 979 304 21 18 chr11 58841240 58841525 -63002331 + B4A SINE B4 6 291 -1 5 1033 232 297 55 78 chr11 58843803 58843931 -62999925 + RMER12 LTR ERVK 726 850 -472 5 1033 265 59 39 19 chr11 58848680 58848732 -62995124 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 5 1033 828 247 6 12 chr11 58850757 58850921 -62992935 + RSINE1 SINE B4 3 165 0 5 1034 295 336 33 0 chr11 58852945 58853067 -62990789 + (TGGG)n Simple_repeat Simple_repeat 4 129 0 5 1034 347 335 24 6 chr11 58853390 58853558 -62990298 + (TGGA)n Simple_repeat Simple_repeat 4 174 0 5 1034 468 105 0 0 chr11 58855306 58855382 -62988474 + (CTGGGG)n Simple_repeat Simple_repeat 3 78 0 5 1034 388 235 39 10 chr11 58860021 58860124 -62983732 + MER21B LTR ERV1 137 242 -621 5 1034 624 298 172 9 chr11 58860248 58860567 -62983289 + MER21B LTR ERV1 462 832 -31 5 1034 191 204 19 0 chr11 58862089 58862143 -62981713 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 5 1034 337 290 45 6 chr11 58862150 58862365 -62981491 + (TAGA)n Simple_repeat Simple_repeat 1 223 0 5 1034 621 40 0 0 chr11 58865550 58865626 -62978230 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 5 1034 340 323 102 9 chr11 58871175 58871471 -62972385 + MLT1B LTR MaLR 62 387 -3 5 1034 861 313 189 8 chr11 58871475 58871907 -62971949 + MLT1B-int LTR MaLR 21 614 -757 5 1034 846 100 21 0 chr11 58871907 58872047 -62971809 + (GA)n Simple_repeat Simple_repeat 2 144 0 5 1034 861 308 220 6 chr11 58872047 58872234 -62971622 + MLT1B-int LTR MaLR 615 887 -484 5 1034 414 0 0 0 chr11 58872339 58872385 -62971471 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1034 447 274 9 0 chr11 58872385 58872498 -62971358 + B1F1 SINE Alu 35 148 -1 5 1034 27 0 0 0 chr11 58872580 58872607 -62971249 + GC_rich Low_complexity Low_complexity 1 27 0 5 1034 555 306 165 39 chr11 58872646 58872830 -62971026 + MLT1B-int LTR MaLR 965 1230 -259 5 1034 1334 153 42 0 chr11 58872830 58873046 -62970810 - URR1A DNA MER1_type -1 225 1 5 1034 555 349 54 35 chr11 58873046 58873137 -62970719 + MLT1B-int LTR MaLR 1133 1227 -144 5 1034 495 0 0 0 chr11 58873157 58873212 -62970644 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1034 1469 209 86 26 chr11 58873282 58873631 -62970225 + ORR1D2 LTR MaLR 1 370 0 5 1034 354 291 184 42 chr11 58873631 58873832 -62970024 + MLT1B LTR MaLR 11 242 -148 5 1034 576 0 0 0 chr11 58877391 58877455 -62966401 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1034 477 0 0 0 chr11 58880299 58880352 -62963504 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1034 520 340 76 36 chr11 58881908 58882265 -62961591 + MLT1B LTR MaLR 12 382 -8 5 1034 339 218 39 30 chr11 58883990 58884124 -62959732 - L1MA5 LINE L1 -284 6007 5874 5 1034 289 269 68 29 chr11 58884139 58884289 -62959567 + L1MA6 LINE L1 6140 6293 -7 5 1034 670 259 28 33 chr11 58884320 58884500 -62959356 + B3A SINE B2 2 180 -18 5 1034 246 81 0 0 chr11 58884509 58884546 -62959310 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1034 515 296 167 4 chr11 58884854 58885088 -62958768 - MER2 DNA MER2_type -6 339 68 5 1034 569 308 32 27 chr11 58885149 58885369 -62958487 - B4A SINE B4 -2 290 70 5 1034 1626 265 20 28 chr11 58887379 58887775 -62956081 + Lx6 LINE L1 7068 7460 0 5 1034 1084 161 78 30 chr11 58892682 58892913 -62950943 + ORR1C1 LTR MaLR 137 378 0 5 1034 255 288 15 0 chr11 58896987 58897053 -62946803 + MLT2B3 LTR ERVL 1 67 -487 5 1034 646 274 56 46 chr11 58897067 58897262 -62946594 - B3A SINE B2 -1 197 1 5 1034 774 139 9 43 chr11 58897274 58897713 -62946143 + (TG)n Simple_repeat Simple_repeat 1 423 0 5 1034 796 255 91 31 chr11 58897742 58898029 -62945827 + MTEb LTR MaLR 76 379 0 5 1034 183 188 0 0 chr11 58899505 58899553 -62944303 + T-rich Low_complexity Low_complexity 1 48 0 5 1034 943 162 0 0 chr11 58899554 58899702 -62944154 - B1_Mur4 SINE Alu -2 148 1 5 1034 1200 157 9 23 chr11 58901579 58901794 -62942062 + B3 SINE B2 5 216 0 5 1034 306 0 0 0 chr11 58902186 58902220 -62941636 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1034 249 336 104 33 chr11 58902335 58902701 -62941155 - L1M5 LINE L1 -2213 3933 3542 5 1034 1421 33 16 6 chr11 58902783 58902965 -62940891 + B2_Mm2 SINE B2 2 185 -10 5 1034 221 263 39 13 chr11 58903106 58903183 -62940673 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1034 257 51 26 0 chr11 58904897 58904936 -62938920 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 5 1034 306 35 16 65 chr11 58904957 58905019 -62938837 + (TTTTG)n Simple_repeat Simple_repeat 1 59 0 5 1034 762 113 121 57 chr11 58905019 58905160 -62938696 - B1_Mur4 SINE Alu 0 150 1 5 1034 485 271 19 83 chr11 58905514 58905671 -62938185 - B1_Mur2 SINE Alu -2 147 1 5 1034 603 0 0 0 chr11 58905727 58905794 -62938062 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1034 266 351 70 0 chr11 58905794 58905908 -62937948 - RSINE1 SINE B4 -41 124 3 5 1034 1125 195 34 4 chr11 58907238 58907475 -62936381 + ORR1D1 LTR MaLR 131 374 0 5 1034 826 187 79 20 chr11 58907850 58908052 -62935804 - B3 SINE B2 0 216 3 5 1034 192 111 0 0 chr11 58908361 58908397 -62935459 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 5 1034 1183 41 0 14 chr11 58908397 58908545 -62935311 - B1_Mus1 SINE Alu -1 147 2 5 1034 351 345 132 18 chr11 58908668 58908940 -62934916 - L1MD LINE L1 -1968 4178 3876 5 1034 1014 104 85 0 chr11 58909426 58909590 -62934266 - B2_Mm2 SINE B2 -16 179 2 5 1034 337 288 116 7 chr11 58909617 58909652 -62934204 - RSINE1 SINE B4 0 165 132 5 1034 947 123 0 6 chr11 58909652 58909816 -62934040 + (TG)n Simple_repeat Simple_repeat 1 163 0 5 1034 337 288 116 7 chr11 58909816 58909927 -62933929 - RSINE1 SINE B4 -34 131 5 5 1034 301 294 12 0 chr11 58910872 58910957 -62932899 - L1MA7 LINE L1 -29 6262 6177 5 1034 1114 242 117 36 chr11 58910958 58911344 -62932512 - MTD LTR MaLR -2 417 1 5 1034 281 230 27 0 chr11 58911359 58911433 -62932423 - L1MA7 LINE L1 -132 6159 6084 5 1034 336 276 0 0 chr11 58911561 58911637 -62932219 - RSINE1 SINE B4 -88 77 2 5 1034 710 252 85 5 chr11 58911647 58911870 -62931986 - L1MA6 LINE L1 0 6300 6060 5 1034 822 180 90 0 chr11 58911979 58912157 -62931699 - B2_Mm2 SINE B2 0 195 2 5 1034 26 50 0 0 chr11 58912266 58912306 -62931550 + AT_rich Low_complexity Low_complexity 1 40 0 5 1034 192 135 0 0 chr11 58912326 58912363 -62931493 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1034 669 76 0 0 chr11 58914590 58914682 -62929174 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1034 396 0 0 0 chr11 58914686 58914730 -62929126 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1034 1450 43 38 0 chr11 58914863 58915049 -62928807 + B2_Mm2 SINE B2 1 193 -2 5 1034 372 308 66 38 chr11 58915061 58915348 -62928508 + L1_Mur3 LINE L1 1427 1721 -4159 5 1034 435 246 177 0 chr11 58915349 58915479 -62928377 + RSINE1 SINE B4 7 159 -6 5 1034 311 377 28 24 chr11 58915483 58915695 -62928161 + L1MEg LINE L1 1240 1452 -4632 5 1034 1153 171 34 0 chr11 58915902 58916107 -62927749 + B3 SINE B2 5 216 0 5 1034 853 200 53 14 chr11 58916271 58916479 -62927377 + B3 SINE B2 1 216 0 5 1034 314 277 26 39 chr11 58916602 58916756 -62927100 + L1M2 LINE L1 2306 2457 -3686 5 1034 300 326 66 53 chr11 58918443 58918595 -62925261 + RSINE1 SINE B4 4 157 -8 5 1034 733 234 17 28 chr11 58919499 58919675 -62924181 + B3A SINE B2 9 182 -16 5 1034 904 128 4 4 chr11 58922965 58923202 -62920654 + (GA)n Simple_repeat Simple_repeat 1 237 0 5 1034 270 267 81 0 chr11 58923224 58923310 -62920546 - RSINE1 SINE B4 -70 95 3 6 1034 313 317 106 14 chr11 58923718 58923859 -62919997 - L1M5 LINE L1 -2651 3495 3342 6 1034 815 254 53 0 chr11 58924123 58924312 -62919544 + B3 SINE B2 12 210 -6 6 1034 1176 54 0 0 chr11 58924410 58924557 -62919299 + B1_Mus1 SINE Alu 2 148 0 6 1034 431 187 60 35 chr11 58924577 58924689 -62919167 + B3A SINE B2 27 157 -41 6 1034 420 71 0 0 chr11 58924692 58924748 -62919108 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1034 477 318 25 40 chr11 58924768 58924968 -62918888 + B3A SINE B2 1 197 -1 6 1034 460 269 83 0 chr11 58926453 58926597 -62917259 - Tigger7 DNA MER2_type -4 2487 2332 6 1034 721 179 0 95 chr11 58926597 58926701 -62917155 + B1_Mur1 SINE Alu 1 104 -45 6 1034 890 114 68 0 chr11 58926701 58926833 -62917023 + B1_Mus2 SINE Alu 1 141 -6 6 1034 894 106 0 0 chr11 58926835 58926967 -62916889 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 6 1034 721 179 0 95 chr11 58926967 58927007 -62916849 + B1_Mur1 SINE Alu 105 134 -15 6 1034 732 168 22 7 chr11 58927005 58927143 -62916713 + B1_Mur2 SINE Alu 9 148 -1 6 1034 241 254 81 65 chr11 58927143 58927188 -62916668 - YREP_Mm Unknown Unknown -1503 307 122 6 1034 794 156 207 0 chr11 58927462 58927641 -62916215 - B3 SINE B2 0 216 1 6 1034 547 236 7 54 chr11 58927849 58927997 -62915859 - RSINE1 SINE B4 -19 146 6 6 1034 288 0 0 0 chr11 58928154 58928186 -62915670 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1034 291 311 73 61 chr11 58928262 58928484 -62915372 + L1MA5 LINE L1 6061 6298 -2 6 1034 236 314 84 60 chr11 58928858 58929024 -62914832 + ORR1E LTR MaLR 4 173 -186 6 1034 342 45 0 0 chr11 58929896 58929940 -62913916 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1034 560 139 88 10 chr11 58930277 58930379 -62913477 + PB1D9 SINE Alu 3 112 -8 6 1034 463 286 76 101 chr11 58930548 58930625 -62913231 + B3A SINE B2 3 77 -121 6 1034 1200 207 166 19 chr11 58930625 58930950 -62912906 + ORR1D1 LTR MaLR 1 373 -1 6 1034 463 286 76 101 chr11 58930950 58931070 -62912786 + B3A SINE B2 78 195 -3 6 1034 2475 74 3 12 chr11 58931218 58931548 -62912308 + ORR1A2 LTR MaLR 1 327 0 6 1034 388 296 135 16 chr11 58931569 58931761 -62912095 - Charlie5 DNA MER1_type -2056 568 354 6 1034 270 150 48 48 chr11 58932256 58932319 -62911537 + PB1D9 SINE Alu 57 119 -1 6 1034 273 205 55 79 chr11 58932490 58932626 -62911230 - MLT1A1 LTR MaLR -3 405 223 6 1034 864 131 0 0 chr11 58932921 58933096 -62910760 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1034 210 250 0 0 chr11 58933535 58933639 -62910217 + (TG)n Simple_repeat Simple_repeat 1 104 0 6 1034 555 196 0 0 chr11 58933697 58933865 -62909991 + (TG)n Simple_repeat Simple_repeat 1 168 0 6 1034 495 200 0 32 chr11 58933885 58934071 -62909785 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1034 420 71 0 0 chr11 58934061 58934117 -62909739 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1034 408 244 0 0 chr11 58934120 58934300 -62909556 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1034 419 255 75 104 chr11 58934371 58934612 -62909244 + L1MEg LINE L1 1152 1385 -5024 6 1034 611 231 48 0 chr11 58934692 58934839 -62909017 - MTD LTR MaLR 0 419 266 6 1034 690 228 122 10 chr11 58935448 58935556 -62908300 - MTD LTR MaLR -192 227 97 6 1034 558 0 0 0 chr11 58935556 58935618 -62908238 + (CATA)n Simple_repeat Simple_repeat 3 64 0 6 1034 690 228 122 10 chr11 58935618 58935713 -62908143 - MTD LTR MaLR -323 96 1 6 1034 222 289 198 5 chr11 58935790 58935941 -62907915 + MIR SINE MIR 19 192 -76 6 1034 24 0 0 0 chr11 58936091 58936115 -62907741 + AT_rich Low_complexity Low_complexity 1 24 0 6 1034 450 0 0 0 chr11 58936685 58936735 -62907121 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1034 432 0 0 0 chr11 58936735 58936782 -62907074 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1034 260 278 23 10 chr11 58938402 58938576 -62905280 - L1M4b LINE L1 -4494 2532 2202 6 1034 222 128 0 0 chr11 58938805 58938844 -62905012 + (CATA)n Simple_repeat Simple_repeat 2 40 0 6 1034 343 230 71 110 chr11 58938844 58938971 -62904885 + L1M4 LINE L1 3378 3499 -2647 6 1034 429 289 31 2 chr11 58938976 58939164 -62904692 + L1M4 LINE L1 4169 4360 -1786 6 1034 482 244 144 22 chr11 58939281 58939461 -62904395 + Lx8 LINE L1 7263 7464 -9 6 1034 302 350 58 27 chr11 58939465 58939653 -62904203 + L1M4 LINE L1 4386 4579 -1567 6 1034 549 218 0 0 chr11 58939727 58939828 -62904028 + B3 SINE B2 111 211 -5 6 1034 310 241 0 24 chr11 58939839 58939924 -62903932 + L1M4 LINE L1 4672 4754 -1392 6 1034 996 73 0 0 chr11 58939925 58940061 -62903795 + B1_Mus1 SINE Alu 13 148 0 6 1034 399 16 31 31 chr11 58940064 58940129 -62903727 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 6 1034 538 211 26 0 chr11 58940144 58940258 -62903598 + B3A SINE B2 2 118 -80 6 1034 695 236 0 33 chr11 58940317 58940470 -62903386 + B1_Mur1 SINE Alu 2 149 0 6 1034 558 0 0 0 chr11 58940688 58940750 -62903106 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1034 239 87 43 0 chr11 58940755 58940801 -62903055 + (CAGAGA)n Simple_repeat Simple_repeat 5 52 0 6 1034 450 278 83 0 chr11 58941996 58942140 -62901716 - Tigger7 DNA MER2_type -4 2487 2332 6 1034 1431 23 40 0 chr11 58942140 58942313 -62901543 + B2_Mm2 SINE B2 2 181 -14 6 1034 913 158 14 0 chr11 58942325 58942471 -62901385 + B1_Mur3 SINE Alu 1 148 -1 6 1034 182 171 0 24 chr11 58942471 58942513 -62901343 + GA-rich Low_complexity Low_complexity 4 44 0 6 1034 954 90 0 0 chr11 58942513 58942647 -62901209 + (GGAA)n Simple_repeat Simple_repeat 4 137 0 6 1034 1009 135 10 40 chr11 58942648 58942848 -62901008 + B2_Mm2 SINE B2 2 195 0 6 1034 542 253 20 46 chr11 58942855 58943008 -62900848 + B1_Mur1 SINE Alu 1 149 0 6 1034 249 98 0 0 chr11 58944326 58944367 -62899489 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1034 2546 85 154 23 chr11 58944389 58944786 -62899070 + RLTR44E LTR ERVK 1 449 -3 6 1034 357 236 0 0 chr11 58944805 58944911 -62898945 + (CA)n Simple_repeat Simple_repeat 2 107 0 6 1034 321 323 12 30 chr11 58945405 58945571 -62898285 + GA-rich Low_complexity Low_complexity 2 164 0 6 1034 205 224 45 0 chr11 58945647 58945714 -62898142 + GA-rich Low_complexity Low_complexity 1 70 0 6 1034 279 113 0 0 chr11 58945738 58945791 -62898065 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1034 333 0 0 0 chr11 58947597 58947634 -62896222 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1034 21 0 0 0 chr11 58948469 58948490 -62895366 + GC_rich Low_complexity Low_complexity 1 21 0 6 1034 469 219 46 37 chr11 58954469 58954578 -62889278 - PB1D10 SINE Alu -5 112 3 6 1034 1199 61 0 0 chr11 58955035 58955183 -62888673 + B1_Mus1 SINE Alu 1 148 0 6 1034 299 273 50 91 chr11 58956010 58956024 -62887832 + MT2B LTR ERVL 145 153 -448 6 1034 606 241 7 7 chr11 58956024 58956166 -62887690 + B1_Mur3 SINE Alu 1 142 -7 6 1034 416 298 27 43 chr11 58956161 58956174 -62887682 + MER2 DNA MER2_type 75 87 -258 6 1034 1417 74 32 0 chr11 58956174 58956363 -62887493 + B2_Mm2 SINE B2 1 195 0 6 1034 416 298 27 43 chr11 58956363 58956502 -62887354 + MER2 DNA MER2_type 88 224 -121 6 1034 289 274 14 0 chr11 58956502 58956575 -62887281 + PB1D10 SINE Alu 1 74 -43 6 1034 345 303 0 96 chr11 58956570 58956705 -62887151 + MER2 DNA MER2_type 222 343 -2 6 1034 425 317 47 21 chr11 58956710 58956900 -62886956 - L1M3 LINE L1 -390 5781 5587 6 1034 1513 65 0 5 chr11 58957222 58957407 -62886449 + B2_Mm2 SINE B2 1 184 -11 6 1034 23 33 0 0 chr11 58957421 58957451 -62886405 + AT_rich Low_complexity Low_complexity 1 30 0 6 1034 312 188 0 0 chr11 58957512 58957581 -62886275 + (GTTTG)n Simple_repeat Simple_repeat 1 69 0 6 1034 802 127 41 34 chr11 58957582 58957729 -62886127 - B1_Mur3 SINE Alu -1 148 1 6 1034 1426 215 123 47 chr11 58958109 58958535 -62885321 + RLTR20B3 LTR ERVK 23 467 -110 6 1034 510 17 0 0 chr11 58958535 58958594 -62885262 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1034 1426 215 123 47 chr11 58958594 58958631 -62885225 + RLTR20B3 LTR ERVK 468 520 -57 6 1034 353 158 26 0 chr11 58958891 58958967 -62884889 + (CATA)n Simple_repeat Simple_repeat 2 79 0 6 1034 204 125 0 0 chr11 58958968 58959000 -62884856 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1034 1382 77 16 21 chr11 58959390 58959576 -62884280 - B2_Mm2 SINE B2 -9 186 2 6 1034 240 234 218 0 chr11 58959582 58959706 -62884150 + L1MA9 LINE L1 6132 6282 -30 6 1034 213 132 0 0 chr11 58959706 58959744 -62884112 + (ATTG)n Simple_repeat Simple_repeat 1 38 0 6 1034 977 128 7 0 chr11 58959745 58959893 -62883963 - B1_Mur4 SINE Alu 0 150 2 6 1034 373 223 0 152 chr11 58959779 58959911 -62883945 - MT2B LTR ERVL -337 264 153 6 1034 272 247 18 36 chr11 58959925 58960018 -62883838 + L1M2 LINE L1 5369 5460 -696 6 1034 379 355 55 78 chr11 58960042 58960072 -62883784 + L1M4b LINE L1 1598 1626 -5708 6 1034 766 212 7 0 chr11 58960072 58960213 -62883643 + B1_Mur3 SINE Alu 1 142 -7 6 1034 1053 24 0 0 chr11 58960213 58960337 -62883519 + (GA)n Simple_repeat Simple_repeat 1 124 0 6 1034 379 355 55 78 chr11 58960337 58960402 -62883454 + L1M4b LINE L1 1627 1677 -5657 6 1034 773 164 219 6 chr11 58960402 58960580 -62883276 - B3 SINE B2 0 216 1 6 1034 379 355 55 78 chr11 58960580 58960780 -62883076 + L1M4b LINE L1 1678 1882 -5452 6 1034 182 0 0 97 chr11 58960993 58961024 -62882832 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 6 1034 293 295 0 13 chr11 58961024 58961103 -62882753 + RSINE1 SINE B4 58 135 -30 6 1034 297 0 0 0 chr11 58961107 58961140 -62882716 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1034 477 0 0 0 chr11 58961140 58961192 -62882664 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1034 608 243 173 13 chr11 58961371 58961596 -62882260 - RMER15 LTR ERVL 0 575 315 6 1034 3297 135 33 63 chr11 58961639 58961904 -62881952 - RMER4B LTR ERVK 0 585 347 6 1034 989 68 106 0 chr11 58961904 58962036 -62881820 - B1_Mm SINE Alu 0 147 2 6 1034 3297 135 33 63 chr11 58962036 58962338 -62881518 - RMER4B LTR ERVK -239 346 39 6 1034 180 0 0 0 chr11 58962338 58962358 -62881498 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1034 3297 135 33 63 chr11 58962358 58962389 -62881467 - RMER4B LTR ERVK -547 38 4 6 1034 234 0 0 0 chr11 58963227 58963253 -62880603 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1034 1181 277 21 17 chr11 58963587 58963874 -62879982 - B4A SINE B4 -4 288 1 6 1034 1184 42 21 0 chr11 58964338 58964482 -62879374 - B1_Mus1 SINE Alu 0 148 2 6 1034 1095 111 17 17 chr11 58965029 58965046 -62878810 - B2_Mm2 SINE B2 -20 175 159 7 1034 261 0 0 0 chr11 58965046 58965075 -62878781 + (TTA)n Simple_repeat Simple_repeat 2 30 0 7 1034 1095 111 17 17 chr11 58965075 58965232 -62878624 - B2_Mm2 SINE B2 -37 158 1 7 1034 1061 218 24 0 chr11 58965309 58965520 -62878336 + B3 SINE B2 1 216 0 7 1034 270 284 60 1 chr11 58965527 58965665 -62878191 + L1M4 LINE L1 5593 5736 -442 7 1034 640 263 22 0 chr11 58965665 58965802 -62878054 + RSINE1 SINE B4 5 144 -21 7 1034 601 200 175 6 chr11 58966186 58966352 -62877504 + ID_B1 SINE B4 15 208 -16 7 1034 387 113 0 0 chr11 58966366 58966437 -62877419 + (CTTG)n Simple_repeat Simple_repeat 1 71 0 7 1034 1290 69 34 6 chr11 58966460 58966635 -62877221 + B2_Mm2 SINE B2 2 181 -14 7 1034 290 169 15 14 chr11 58966682 58966754 -62877102 + B2_Mm2 SINE B2 47 121 -95 7 1034 570 15 0 0 chr11 58966754 58966821 -62877035 + (CATA)n Simple_repeat Simple_repeat 4 70 0 7 1034 898 104 14 0 chr11 58966879 58967001 -62876855 + B2_Mm2 SINE B2 34 157 -38 7 1034 423 0 0 0 chr11 58967001 58967048 -62876808 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 7 1034 898 104 14 0 chr11 58967048 58967069 -62876787 + B2_Mm2 SINE B2 158 178 -17 7 1034 1437 57 0 94 chr11 58967289 58967502 -62876354 - B2_Mm2 SINE B2 -2 193 1 7 1034 255 258 99 22 chr11 58967586 58967677 -62876179 - PB1D10 SINE Alu -5 112 15 7 1034 437 283 124 52 chr11 58967849 58968140 -62875716 - L1MA6 LINE L1 -66 6234 5923 7 1034 306 0 0 0 chr11 58968662 58968696 -62875160 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1034 1184 44 0 0 chr11 58968696 58968833 -62875023 - B1_Mus2 SINE Alu -9 138 2 7 1034 349 278 156 28 chr11 58969679 58969897 -62873959 + ORR1E LTR MaLR 1 246 -113 7 1034 950 146 0 20 chr11 58970366 58970505 -62873351 + B1_Mur4 SINE Alu 1 137 -13 7 1034 225 65 0 0 chr11 58970505 58970536 -62873320 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 1034 601 267 12 18 chr11 58970546 58970710 -62873146 + B3A SINE B2 36 198 0 7 1034 328 257 58 12 chr11 58970753 58970839 -62873017 + PB1D10 SINE Alu 13 100 -49 7 1034 182 150 24 48 chr11 58973635 58973677 -62870179 + L2b LINE L2 3303 3343 -32 7 1034 1410 243 40 20 chr11 58974067 58974420 -62869436 - MTEa LTR MaLR 0 379 20 7 1034 218 32 0 31 chr11 58977232 58977264 -62866592 + (CGG)n Simple_repeat Simple_repeat 2 32 0 7 1034 322 209 10 81 chr11 58977443 58977542 -62866314 + PB1D10 SINE Alu 24 115 -2 7 1034 355 202 12 71 chr11 58977542 58977627 -62866229 + ID4 SINE ID 4 83 0 7 1034 1214 215 184 9 chr11 58977706 58978048 -62865808 - MTD LTR MaLR -14 405 4 7 1034 414 291 184 38 chr11 58978051 58978337 -62865519 - L1MB3 LINE L1 -48 6135 5795 7 1034 1168 78 0 0 chr11 58978337 58978479 -62865377 + B1_Mus2 SINE Alu 1 142 -5 7 1034 414 314 89 58 chr11 58978479 58978636 -62865220 - L1MB3 LINE L1 -389 5794 5645 7 1034 586 213 49 0 chr11 58978727 58978849 -62865007 + B1_Mur3 SINE Alu 9 136 -13 7 1034 2151 151 42 27 chr11 58978906 58979156 -62864700 + MTC LTR MaLR 1 243 -178 7 1034 564 42 0 0 chr11 58979156 58979227 -62864629 + (TCCCC)n Simple_repeat Simple_repeat 3 73 0 7 1034 2151 151 42 27 chr11 58979227 58979384 -62864472 + MTC LTR MaLR 244 413 -8 7 1034 1911 177 70 22 chr11 58980137 58980552 -62863304 + RMER10A LTR ERVL 2 436 -6 7 1034 733 290 20 10 chr11 58980707 58980909 -62862947 - B3 SINE B2 -11 205 2 7 1034 263 277 54 85 chr11 58980932 58981062 -62862794 + B4 SINE B4 79 204 -88 7 1034 672 135 21 76 chr11 58980952 58981096 -62862760 + B1F2 SINE Alu 12 147 -2 7 1034 955 106 28 7 chr11 58981099 58981242 -62862614 + B1_Mus1 SINE Alu 1 146 -2 7 1034 30 0 0 0 chr11 58981242 58981272 -62862584 + AT_rich Low_complexity Low_complexity 1 30 0 7 1034 726 225 0 0 chr11 58982187 58982316 -62861540 - B1_Mur1 SINE Alu -19 130 2 7 129 456 268 9 9 chr11 58982372 58982485 -62861371 + B4A SINE B4 1 113 -179 7 1035 417 304 103 60 chr11 58982485 58982592 -62861264 + B3A SINE B2 1 213 -3 7 1035 436 253 168 29 chr11 58982590 58982958 -62860898 - MER31A LTR ERV1 -26 459 3 7 1035 401 282 64 0 chr11 58983038 58983148 -62860708 + ID_B1 SINE B4 104 220 -4 7 1035 243 320 59 111 chr11 58984877 58985130 -62858726 + RMER15 LTR ERVL 292 531 -44 7 1035 1833 232 67 11 chr11 58985244 58985719 -62858137 + RMER20A LTR ERVK 11 512 -4 7 1035 309 298 0 0 chr11 58985838 58985922 -62857934 + MLT1B LTR MaLR 27 110 -280 7 1035 690 115 130 8 chr11 58986571 58986694 -62857162 + B1_Mus1 SINE Alu 11 148 0 7 1035 333 0 0 0 chr11 58986706 58986743 -62857113 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1035 1209 48 0 20 chr11 58987505 58987655 -62856201 + B1_Mus1 SINE Alu 2 148 0 7 1035 180 0 0 0 chr11 58987704 58987724 -62856132 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1035 268 225 194 43 chr11 58987878 58987971 -62855885 + MLT2B1 LTR ERVL 107 213 -307 7 1035 371 352 0 22 chr11 58992397 58992580 -62851276 + (CA)n Simple_repeat Simple_repeat 1 179 0 7 1035 397 276 0 96 chr11 58993467 58993603 -62850253 - ID_B1 SINE B4 -3 221 99 7 1035 330 26 0 0 chr11 58993794 58993833 -62850023 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1035 440 274 103 0 chr11 58994126 58994243 -62849613 + ID_B1 SINE B4 86 214 -10 7 1035 311 317 88 18 chr11 58994256 58994426 -62849430 + L1MD3 LINE L1 6695 6876 -909 7 1035 350 264 84 11 chr11 58994743 58994921 -62848935 + L1MD3 LINE L1 7529 7690 -305 7 1035 1363 52 40 0 chr11 59004111 59004284 -62839572 + B2_Mm2 SINE B2 1 180 -15 1 1035 822 39 0 0 chr11 59004284 59004386 -62839470 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 2 1035 278 245 0 65 chr11 59005771 59005849 -62838007 + B3A SINE B2 21 96 -102 3 1035 494 266 18 0 chr11 59005903 59006012 -62837844 - PB1D9 SINE Alu 0 120 10 4 1035 665 118 29 0 chr11 59006013 59006115 -62837741 + B1_Mur3 SINE Alu 40 144 -5 5 1035 1372 60 49 5 chr11 59006180 59006336 -62837520 + B2_Mm1a SINE B2 1 156 -37 6 1035 612 40 0 0 chr11 59006336 59006411 -62837445 + (TAAA)n Simple_repeat Simple_repeat 3 77 0 7 1035 1372 60 49 5 chr11 59006411 59006439 -62837417 + B2_Mm1a SINE B2 157 193 0 6 1035 641 272 7 13 chr11 59006507 59006656 -62837200 + B1_Mur1 SINE Alu 1 148 -1 8 1035 959 96 15 0 chr11 59006858 59006993 -62836863 + B2_Mm2 SINE B2 1 137 -58 9 1035 311 156 31 0 chr11 59006998 59007062 -62836794 + G-rich Low_complexity Low_complexity 3 68 0 1 1035 511 258 115 94 chr11 59007487 59007774 -62836082 + RMER10A LTR ERVL 14 306 -136 1 1035 1265 40 0 13 chr11 59007802 59007952 -62835904 - B1_Mus1 SINE Alu 0 148 1 1 1035 1300 163 520 14 chr11 59007953 59008331 -62835525 - RMER4B LTR ERVK -2 583 15 1 1035 412 183 82 55 chr11 59008393 59008503 -62835353 + RMER10A LTR ERVL 318 430 -12 1 1035 1390 82 16 0 chr11 59008623 59008805 -62835051 - B2_Mm2 SINE B2 -10 185 1 1 1035 1581 225 42 24 chr11 59008840 59009173 -62834683 - RLTR19 LTR ERVK 0 499 161 1 1035 803 88 230 14 chr11 59009174 59009299 -62834557 + B2_Mm2 SINE B2 4 160 -35 1 1035 192 111 0 0 chr11 59009299 59009335 -62834521 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1 1035 803 88 230 14 chr11 59009335 59009348 -62834508 + B2_Mm2 SINE B2 161 172 -23 1 1035 524 187 0 0 chr11 59009351 59009474 -62834382 - RLTR19 LTR ERVK -342 157 1 1 1035 668 214 180 27 chr11 59009561 59009744 -62834112 - B3 SINE B2 0 216 6 1 1035 470 190 113 74 chr11 59009928 59010113 -62833743 + MTE-int LTR MaLR 1288 1431 -149 1 1035 1438 157 69 123 chr11 59010113 59010155 -62833701 - MTC LTR MaLR 0 421 388 2 1035 2705 117 178 6 chr11 59010155 59010654 -62833202 + RMER4B LTR ERVK 1 585 0 2 1035 1438 157 69 123 chr11 59010654 59010861 -62832995 - MTC LTR MaLR -34 387 196 2 1035 931 61 130 0 chr11 59010861 59010992 -62832864 - B1_Mus1 SINE Alu 0 148 1 2 1035 1438 157 69 123 chr11 59010992 59011075 -62832781 - MTC LTR MaLR -226 195 106 2 1035 584 243 28 0 chr11 59011075 59011219 -62832637 + RMER1A Other Other 35 182 -848 2 1035 3344 45 2 5 chr11 59011363 59011760 -62832096 - MTA_Mm LTR MaLR 0 396 1 2 1035 929 145 27 20 chr11 59012761 59012909 -62830947 - B1_Mur3 SINE Alu 0 149 1 2 1035 568 271 20 14 chr11 59012977 59013123 -62830733 + B1F SINE Alu 3 149 0 2 1035 355 265 89 70 chr11 59013353 59013511 -62830345 - ID_B1 SINE B4 0 224 64 2 1035 410 215 108 0 chr11 59013611 59013704 -62830152 - ID_B1 SINE B4 -16 208 106 2 1035 1274 91 11 6 chr11 59013991 59014168 -62829688 + B2_Mm1t SINE B2 2 179 -14 2 1035 356 87 421 0 chr11 59014196 59014298 -62829558 + B2_Mm2 SINE B2 47 191 -4 3 1035 874 143 36 0 chr11 59014312 59014452 -62829404 + B1_Mur2 SINE Alu 5 149 0 3 1035 197 83 28 0 chr11 59015084 59015120 -62828736 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 1035 180 0 0 0 chr11 59016790 59016810 -62827046 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1035 1242 62 0 0 chr11 59016810 59016956 -62826900 - B1_Mus2 SINE Alu 0 147 2 3 1035 1371 84 16 5 chr11 59017114 59017306 -62826550 - B2_Mm2 SINE B2 0 195 2 3 1035 592 261 35 0 chr11 59017339 59017481 -62826375 - ID_B1 SINE B4 0 224 78 3 1035 265 299 89 45 chr11 59018461 59018573 -62825283 - PB1D10 SINE Alu 0 117 1 3 1035 331 309 74 0 chr11 59018626 59018707 -62825149 + ID_B1 SINE B4 9 95 -129 3 1035 1227 34 0 7 chr11 59018708 59018856 -62825000 + B1_Mus1 SINE Alu 2 148 0 3 1035 355 291 46 7 chr11 59018883 59019002 -62824854 + PB1D10 SINE Alu 3 118 -31 4 1035 414 198 342 0 chr11 59019535 59019646 -62824210 - B1_Mur1 SINE Alu 0 149 1 4 1035 3114 125 173 14 chr11 59020397 59021020 -62822836 + RMER6A LTR ERVK 35 756 0 4 1035 351 204 22 286 chr11 59023070 59023255 -62820601 + B1_Mur1 SINE Alu 5 140 -9 4 1035 204 226 0 0 chr11 59023487 59023549 -62820307 + GA-rich Low_complexity Low_complexity 2 63 0 4 1035 830 67 244 0 chr11 59027412 59027531 -62816325 - B1_Mus1 SINE Alu 0 148 1 4 1035 817 165 14 35 chr11 59029133 59029277 -62814579 - B1_Mur4 SINE Alu 0 150 10 4 1035 302 238 35 114 chr11 59029176 59029290 -62814566 - MT2B LTR ERVL -337 264 160 4 1035 1089 146 27 11 chr11 59029656 59029843 -62814013 + B2_Mm2 SINE B2 2 191 -4 4 1035 809 211 132 0 chr11 59029878 59030068 -62813788 + ID_B1 SINE B4 3 217 -7 4 1035 349 253 0 90 chr11 59030075 59030175 -62813681 + MT2B LTR ERVL 169 259 -342 5 1035 513 264 23 8 chr11 59030088 59030218 -62813638 + B1_Mur2 SINE Alu 18 149 0 5 1035 1082 67 0 0 chr11 59031038 59031173 -62812683 + B1_Mus1 SINE Alu 14 148 0 5 1035 442 216 44 120 chr11 59031039 59031197 -62812659 + B4A SINE B4 99 244 -48 5 1035 264 252 248 20 chr11 59031346 59031359 -62812497 + B1F SINE Alu 24 147 -2 5 1035 345 209 148 23 chr11 59031359 59031447 -62812409 + ID_B1 SINE B4 124 222 -2 5 1035 883 179 25 25 chr11 59032638 59032798 -62811058 + B3A SINE B2 1 160 -38 5 1035 297 75 0 0 chr11 59033537 59033577 -62810279 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 5 1035 1117 78 7 0 chr11 59033581 59033723 -62810133 - B1_Mus1 SINE Alu -5 143 1 5 1035 736 182 249 0 chr11 59034110 59034291 -62809565 + URR1A DNA MER1_type 1 226 0 5 1035 502 245 19 9 chr11 59035449 59035556 -62808300 + PB1D7 SINE Alu 13 120 0 6 1035 682 215 84 24 chr11 59035560 59035724 -62808132 + B3A SINE B2 1 162 -36 6 1035 252 59 0 0 chr11 59035724 59035758 -62808098 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1035 417 221 66 150 chr11 59035758 59035806 -62808050 + B2_Mm2 SINE B2 161 195 0 6 1035 350 294 112 58 chr11 59036679 59036867 -62806989 - MER20B DNA MER1_type -373 410 213 6 1035 271 297 21 86 chr11 59037198 59037338 -62806518 - B1_Mur4 SINE Alu -3 147 17 6 1035 668 250 119 27 chr11 59037230 59037415 -62806441 - B4A SINE B4 -86 206 5 6 1035 374 171 24 0 chr11 59037456 59037545 -62806311 + B1_Mur4 SINE Alu 18 114 -35 6 1035 338 208 57 86 chr11 59038619 59038724 -62805132 + PB1D7 SINE Alu 2 103 -17 6 1035 781 126 109 0 chr11 59039447 59039566 -62804290 + B1_Mus1 SINE Alu 1 132 -16 6 1035 219 139 0 0 chr11 59039737 59039773 -62804083 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1035 288 294 0 0 chr11 59039992 59040060 -62803796 - ID4_ SINE ID -1 82 15 7 1035 318 214 78 39 chr11 59042989 59043091 -62800765 + L1MA5A LINE L1 6186 6291 -6 7 1035 733 244 93 0 chr11 59043288 59043481 -62800375 - B3 SINE B2 -5 211 1 7 1035 364 262 222 0 chr11 59043531 59043657 -62800199 + B3A SINE B2 36 189 -9 7 1035 42 36 0 0 chr11 59043658 59043714 -62800142 + AT_rich Low_complexity Low_complexity 1 56 0 7 1035 507 33 0 0 chr11 59044499 59044560 -62799296 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1035 390 91 0 0 chr11 59044560 59044614 -62799242 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1035 30 27 0 0 chr11 59044806 59044843 -62799013 + AT_rich Low_complexity Low_complexity 1 37 0 7 1035 1062 57 112 59 chr11 59044843 59045007 -62798849 + B2_Mm1t SINE B2 1 174 -19 7 1035 1307 95 50 0 chr11 59045007 59045186 -62798670 - B2_Mm2 SINE B2 -7 188 1 7 1035 1473 276 148 53 chr11 59045481 59045961 -62797895 + MER21B LTR ERV1 36 562 -301 8 1035 392 35 0 34 chr11 59045961 59046020 -62797836 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 8 1035 927 116 47 0 chr11 59046020 59046149 -62797707 - B1_Mus1 SINE Alu -10 138 4 8 1035 1473 276 148 53 chr11 59046149 59046423 -62797433 + MER21B LTR ERV1 563 862 -1 8 1035 191 222 36 18 chr11 59046424 59046479 -62797377 + L2 LINE L2 1664 1719 -1700 8 1035 207 0 0 0 chr11 59047103 59047126 -62796730 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1035 1196 61 0 33 chr11 59047126 59047278 -62796578 - B1_Mm SINE Alu 0 147 1 8 1035 412 304 67 28 chr11 59047348 59047602 -62796254 - L1MA5 LINE L1 -233 6067 5804 8 1035 241 351 42 56 chr11 59047632 59047774 -62796082 + B4A SINE B4 10 149 -143 8 1035 657 242 25 172 chr11 59047791 59047831 -62796025 + B3 SINE B2 1 39 -177 8 1035 1181 43 14 0 chr11 59047831 59047969 -62795887 + B1_Mm SINE Alu 2 141 -6 8 1035 240 35 0 0 chr11 59047969 59047998 -62795858 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1035 657 242 25 172 chr11 59047998 59048200 -62795656 + B3 SINE B2 40 207 -9 8 1035 279 298 11 45 chr11 59048204 59048292 -62795564 + B4A SINE B4 208 292 0 8 1035 227 297 31 0 chr11 59048368 59048432 -62795424 + Charlie4a DNA MER1_type 180 245 -263 9 1035 208 315 123 0 chr11 59048811 59048884 -62794972 - MER5A DNA MER1_type -22 167 86 9 1035 901 75 8 0 chr11 59049564 59049684 -62794172 + B1_Mm SINE Alu 27 147 0 9 1035 443 181 119 52 chr11 59049889 59050023 -62793833 + B1_Mur4 SINE Alu 2 144 -6 9 1035 1491 58 32 0 chr11 59050033 59050221 -62793635 + B2_Mm2 SINE B2 1 194 -1 9 1035 506 315 8 8 chr11 59050262 59050390 -62793466 - ID_B1 SINE B4 -19 205 78 9 1035 233 288 32 112 chr11 59050661 59050786 -62793070 - MLT1A LTR MaLR -244 130 16 9 1035 252 0 0 0 chr11 59051624 59051652 -62792204 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1035 582 184 19 0 chr11 59051804 59051907 -62791949 - ID_B1 SINE B4 -5 219 115 9 1035 213 195 0 0 chr11 59052269 59052310 -62791546 + C-rich Low_complexity Low_complexity 1 41 0 1 1035 229 279 0 42 chr11 59055756 59055800 -62788056 + polypyrimidine Low_complexity Low_complexity 27 68 0 1 1035 666 37 0 0 chr11 59055800 59055881 -62787975 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 1 1035 229 279 0 42 chr11 59055881 59055907 -62787949 + polypyrimidine Low_complexity Low_complexity 1 26 0 1 1035 212 224 49 49 chr11 59057726 59057787 -62786069 - MIR3 SINE MIR -51 157 97 1 1035 292 244 51 0 chr11 59059128 59059206 -62784650 - ID4 SINE ID 0 83 2 1 1035 326 343 29 7 chr11 59059220 59059358 -62784498 - B1F1 SINE Alu -8 141 1 1 1035 41 0 0 0 chr11 59060293 59060334 -62783522 + AT_rich Low_complexity Low_complexity 1 41 0 1 1035 1087 99 0 0 chr11 59060338 59060479 -62783377 - B1_Mus2 SINE Alu -6 141 1 1 1035 182 37 37 0 chr11 59061611 59061638 -62782218 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1035 285 311 76 52 chr11 59064467 59064597 -62779259 + L1MA6 LINE L1 6038 6174 -126 1 1035 719 236 7 7 chr11 59064597 59064738 -62779118 - B1F1 SINE Alu -8 141 1 1 1035 285 311 76 52 chr11 59064738 59064858 -62778998 + L1MA6 LINE L1 6175 6294 -6 1 1035 271 296 0 85 chr11 59065064 59065182 -62778674 + PB1D10 SINE Alu 1 108 -9 1 1035 1299 65 5 5 chr11 59065209 59065395 -62778461 - B2_Mm2 SINE B2 -4 191 6 1 1035 824 134 55 21 chr11 59065421 59065566 -62778290 - B1_Mur4 SINE Alu 0 150 1 1 1035 304 294 33 16 chr11 59066014 59066135 -62777721 - HAL1 LINE L1 -184 2323 2201 1 1035 801 271 77 0 chr11 59066329 59066536 -62777320 + ID_B1 SINE B4 2 224 0 1 1035 258 333 42 0 chr11 59066547 59066643 -62777213 + RSINE1 SINE B4 3 102 -63 1 1035 1213 54 0 0 chr11 59066646 59066793 -62777063 + B1_Mus1 SINE Alu 2 148 0 1 1035 800 196 0 6 chr11 59066793 59066973 -62776883 + GA-rich Low_complexity Low_complexity 2 180 0 1 1035 586 195 32 0 chr11 59066992 59067115 -62776741 + B1_Mur4 SINE Alu 2 128 -22 1 1035 200 103 51 0 chr11 59067120 59067159 -62776697 + GA-rich Low_complexity Low_complexity 4 44 0 1 1035 324 0 0 0 chr11 59067206 59067242 -62776614 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1035 364 238 10 19 chr11 59067330 59067433 -62776423 - HAL1 LINE L1 -897 1610 1509 1 1035 513 281 78 30 chr11 59067554 59067745 -62776111 - B3A SINE B2 -8 208 8 1 1035 369 143 0 0 chr11 59067919 59067975 -62775881 - B1_Mus2 SINE Alu -35 112 57 1 1035 545 206 19 0 chr11 59067973 59068080 -62775776 - B1_Mus2 SINE Alu -35 112 4 1 1035 1142 35 0 7 chr11 59068393 59068537 -62775319 + (TTTCC)n Simple_repeat Simple_repeat 4 146 0 1 1035 458 258 69 15 chr11 59068538 59068668 -62775188 - ID_B1 SINE B4 -7 217 81 1 1035 239 167 15 0 chr11 59069087 59069153 -62774703 + CT-rich Low_complexity Low_complexity 2 68 0 1 1035 505 185 11 0 chr11 59069170 59069348 -62774508 + CT-rich Low_complexity Low_complexity 1 180 0 1 1035 387 83 0 0 chr11 59070227 59070287 -62773569 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1035 410 233 248 8 chr11 59070301 59070418 -62773438 - B1_Mur1 SINE Alu -2 147 3 1 1035 549 299 117 34 chr11 59070419 59070710 -62773146 - L1M2 LINE L1 -1092 5051 4737 1 1035 931 278 142 14 chr11 59070707 59070753 -62773103 + L1MA6 LINE L1 5786 5831 -469 1 1035 993 82 0 56 chr11 59070753 59070895 -62772961 + B1_Mus1 SINE Alu 1 134 -14 1 1035 931 278 142 14 chr11 59070895 59071285 -62772571 + L1MA6 LINE L1 5832 6277 -23 1 1035 816 221 120 5 chr11 59071298 59071498 -62772358 + ID_B1 SINE B4 1 223 -1 1 1035 527 276 87 24 chr11 59071510 59071718 -62772138 + ID_B1 SINE B4 4 224 0 1 1035 348 253 0 0 chr11 59071803 59071875 -62771981 + PB1D7 SINE Alu 13 84 -36 1 1035 745 343 77 68 chr11 59071875 59071957 -62771899 + MT2A LTR ERVL 4 87 -514 1 1035 622 171 16 33 chr11 59071957 59072078 -62771778 - PB1D9 SINE Alu -1 119 1 1 1035 1426 213 206 24 chr11 59072078 59072580 -62771276 + MT2A LTR ERVL 66 593 -8 1 1035 515 56 14 0 chr11 59072656 59072727 -62771129 + (GGGGA)n Simple_repeat Simple_repeat 5 76 0 1 1035 358 317 97 0 chr11 59072748 59072893 -62770963 + Tigger7 DNA MER2_type 2297 2455 -36 1 1035 832 260 41 51 chr11 59073010 59073302 -62770554 - L1M1 LINE L1 -496 5807 5519 1 1035 746 264 126 5 chr11 59074333 59074531 -62769325 - ID_B1 SINE B4 -2 222 1 1 1035 296 258 122 48 chr11 59074879 59075029 -62768827 + MIR SINE MIR 3 153 -115 1 1035 226 270 26 26 chr11 59075819 59075895 -62767961 + Charlie24 DNA MER1_type 2374 2449 -1 1 1035 333 186 57 0 chr11 59076310 59076380 -62767476 + B1F SINE Alu 6 79 -70 1 1035 253 185 31 0 chr11 59076596 59076661 -62767195 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 1 1035 341 164 13 27 chr11 59076796 59076871 -62766985 - L1_Rod LINE L1 -3295 2552 2479 1 1035 258 106 0 0 chr11 59076873 59076920 -62766936 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1035 27 0 0 0 chr11 59077690 59077717 -62766139 + GC_rich Low_complexity Low_complexity 1 27 0 1 1035 203 371 17 0 chr11 59079385 59079501 -62764355 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 1035 281 357 6 12 chr11 59079595 59079765 -62764091 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1035 217 173 19 19 chr11 59080146 59080199 -62763657 + GA-rich Low_complexity Low_complexity 2 54 0 1 1035 457 301 0 0 chr11 59081131 59081244 -62762612 + PB1 SINE Alu 11 123 -4 1 1035 562 211 0 19 chr11 59081303 59081409 -62762447 - B1_Mur2 SINE Alu -41 108 5 1 1035 258 302 0 104 chr11 59081328 59081424 -62762432 - MT2B LTR ERVL -361 240 155 1 1035 592 301 102 0 chr11 59081500 59081666 -62762190 + B3A SINE B2 2 184 -14 1 1035 213 219 0 0 chr11 59081668 59081709 -62762147 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1035 1168 198 14 5 chr11 59081744 59081957 -62761899 + B3 SINE B2 2 216 0 1 1035 21 0 0 0 chr11 59081957 59081978 -62761878 + AT_rich Low_complexity Low_complexity 1 21 0 1 1035 486 169 12 0 chr11 59082379 59082462 -62761394 + B1_Mur4 SINE Alu 16 99 -51 1 1035 851 181 114 26 chr11 59082473 59082666 -62761190 + B3 SINE B2 1 210 -6 1 1035 893 165 10 7 chr11 59082873 59083169 -62760687 + CT-rich Low_complexity Low_complexity 1 297 0 1 1035 1228 209 24 0 chr11 59083207 59083417 -62760439 + B3 SINE B2 1 215 -1 1 1035 447 334 116 27 chr11 59083447 59083749 -62760107 + L1MB5 LINE L1 4636 4967 -1179 1 1035 480 153 49 35 chr11 59083756 59083898 -62759958 + RMER17C LTR ERVK 132 275 -135 1 1035 240 35 0 0 chr11 59083899 59083928 -62759928 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1035 714 213 28 7 chr11 59083946 59084088 -62759768 + B1_Mur4 SINE Alu 5 149 -1 1 1035 25 31 0 0 chr11 59084147 59084179 -62759677 + AT_rich Low_complexity Low_complexity 1 32 0 1 1035 1090 166 98 0 chr11 59084185 59084378 -62759478 + B3 SINE B2 2 213 -3 1 1035 310 298 51 102 chr11 59084444 59084601 -62759255 - B1_Mur1 SINE Alu 0 149 1 1 1035 879 109 0 0 chr11 59084657 59084785 -62759071 + B1_Mur4 SINE Alu 11 138 -12 1 1035 253 280 180 0 chr11 59084804 59084904 -62758952 + L1MB5 LINE L1 5052 5169 -977 1 1035 657 266 26 11 chr11 59084906 59085096 -62758760 + B3A SINE B2 1 193 -5 1 1035 24 67 0 0 chr11 59085097 59085142 -62758714 + AT_rich Low_complexity Low_complexity 1 45 0 1 1035 345 324 0 44 chr11 59085145 59085258 -62758598 - B3 SINE B2 -57 159 52 1 1035 312 292 71 54 chr11 59085257 59085369 -62758487 + RSINE1 SINE B4 52 165 0 1 1035 315 0 0 0 chr11 59085372 59085407 -62758449 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1035 390 301 101 19 chr11 59085411 59085587 -62758269 + L1MD LINE L1 5250 5438 -2557 1 1035 1115 130 6 22 chr11 59085982 59086163 -62757693 + ORR1A2 LTR MaLR 1 178 -149 1 1035 278 366 33 111 chr11 59086335 59086642 -62757214 + ORR1E LTR MaLR 77 359 0 1 1035 1220 248 107 3 chr11 59087685 59088021 -62755835 + L1MB5 LINE L1 5793 6163 -11 1 1035 317 283 16 8 chr11 59088057 59088178 -62755678 + CT-rich Low_complexity Low_complexity 1 122 0 1 1035 796 240 183 0 chr11 59089099 59089345 -62754511 + B4A SINE B4 1 291 -1 1 1035 1413 93 0 20 chr11 59089588 59089786 -62754070 - B2_Mm2 SINE B2 0 195 2 1 1035 561 205 134 0 chr11 59089791 59089918 -62753938 - ID_B1 SINE B4 0 224 81 1 1035 320 280 93 0 chr11 59089937 59090044 -62753812 - PB1D10 SINE Alu 0 117 1 1 1035 246 105 0 0 chr11 59090938 59090976 -62752880 + (TCC)n Simple_repeat Simple_repeat 2 39 0 1 1035 1194 68 7 0 chr11 59090997 59091143 -62752713 - B1_Mus1 SINE Alu 0 148 2 1 1035 669 155 51 8 chr11 59091151 59091268 -62752588 - B1_Mur4 SINE Alu -4 146 25 1 1035 362 256 0 0 chr11 59091249 59091327 -62752529 - ID SINE ID -146 78 1 1 1035 237 65 0 0 chr11 59092126 59092157 -62751699 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1035 386 276 0 0 chr11 59092157 59092244 -62751612 - ID_B1 SINE B4 -22 202 116 1 1035 679 161 5 30 chr11 59092241 59092387 -62751469 - B1_Mur3 SINE Alu -4 143 1 1 1035 273 211 184 0 chr11 59092482 59092558 -62751298 - ID_B1 SINE B4 0 224 135 1 1035 536 300 7 32 chr11 59092873 59093028 -62750828 + RSINE1 SINE B4 1 151 -14 1 1035 27 0 0 0 chr11 59093047 59093074 -62750782 + AT_rich Low_complexity Low_complexity 1 27 0 1 1035 833 319 50 23 chr11 59094446 59094706 -62749150 - B4 SINE B4 -24 268 2 1 1035 186 189 27 0 chr11 59095055 59095092 -62748764 + MIR3 SINE MIR 165 202 -6 1 1035 342 0 0 0 chr11 59096267 59096305 -62747551 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1035 396 0 0 0 chr11 59097146 59097190 -62746666 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1035 684 104 0 36 chr11 59099201 59099311 -62744545 - B1_Mm SINE Alu 0 147 42 1 1035 268 200 58 83 chr11 59099235 59099355 -62744501 - RLTR25B LTR ERVK -515 513 397 1 1035 278 111 0 100 chr11 59099436 59099496 -62744360 - B1_Mus1 SINE Alu -93 55 2 2 1035 619 159 16 8 chr11 59099642 59099769 -62744087 + (CATATA)n Simple_repeat Simple_repeat 3 130 0 2 1035 205 138 0 0 chr11 59100490 59100519 -62743337 + (TCTCCC)n Simple_repeat Simple_repeat 2 30 0 2 1035 576 0 0 0 chr11 59103658 59103722 -62740134 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1035 25 0 0 0 chr11 59104325 59104350 -62739506 + GC_rich Low_complexity Low_complexity 1 25 0 2 1035 217 127 22 44 chr11 59104357 59104448 -62739408 + (CGGGG)n Simple_repeat Simple_repeat 5 93 0 2 1035 189 237 0 0 chr11 59106479 59106538 -62737318 + GA-rich Low_complexity Low_complexity 1 59 0 2 1035 923 110 19 64 chr11 59106825 59106981 -62736875 - B1_Mur4 SINE Alu 0 150 2 2 1035 204 328 0 0 chr11 59107012 59107079 -62736777 + CT-rich Low_complexity Low_complexity 2 68 0 2 1035 1263 41 0 0 chr11 59107955 59108102 -62735754 + B1_Mm SINE Alu 1 147 0 2 1035 333 0 0 0 chr11 59108207 59108244 -62735612 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1035 1108 215 0 14 chr11 59108345 59108553 -62735303 - B3 SINE B2 -11 205 1 2 1035 1001 213 10 24 chr11 59108553 59108760 -62735096 - B3 SINE B2 -5 211 8 2 1035 459 0 0 0 chr11 59108785 59108836 -62735020 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1035 1201 75 0 0 chr11 59108840 59108987 -62734869 - B1_Mm SINE Alu 0 147 1 2 1035 861 241 49 10 chr11 59108989 59109194 -62734662 - B3 SINE B2 -1 215 3 2 1035 518 269 77 0 chr11 59109228 59109358 -62734498 - B1_Mur3 SINE Alu -9 140 1 2 1035 252 200 0 0 chr11 59110388 59110448 -62733408 + CT-rich Low_complexity Low_complexity 3 62 0 2 1035 1285 273 125 21 chr11 59110587 59111058 -62732798 + Tigger7 DNA MER2_type 11 530 -1961 2 1035 238 331 71 7 chr11 59111043 59111183 -62732673 + Tigger7 DNA MER2_type 2308 2456 -35 2 1035 583 300 75 17 chr11 59111953 59112245 -62731611 + L1MA5 LINE L1 5651 5959 -341 2 1035 215 93 23 0 chr11 59113319 59113362 -62730494 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 2 129 382 171 252 35 chr11 59113454 59113569 -62730287 - B1_Mur2 SINE Alu 0 149 10 2 1036 527 246 27 0 chr11 59113591 59113701 -62730155 - PB1D7 SINE Alu -7 113 1 2 1036 722 229 120 21 chr11 59113811 59114003 -62729853 - B3 SINE B2 -4 212 2 2 1036 214 283 155 26 chr11 59114173 59114289 -62729567 + B4 SINE B4 10 140 -152 2 1036 781 249 91 10 chr11 59114343 59114542 -62729314 + B3 SINE B2 2 216 0 2 1036 1332 88 22 6 chr11 59114545 59114727 -62729129 - B2_Mm2 SINE B2 -9 186 2 2 1036 209 0 97 0 chr11 59114886 59114917 -62728939 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1036 1207 114 49 5 chr11 59115035 59115220 -62728636 + B2_Mm2 SINE B2 1 193 -2 2 1036 412 191 51 60 chr11 59115232 59115349 -62728507 + PB1D10 SINE Alu 1 116 -1 2 1036 297 336 95 0 chr11 59115402 59115518 -62728338 + ID_B1 SINE B4 61 187 -37 2 1036 255 246 33 0 chr11 59115518 59115579 -62728277 + GA-rich Low_complexity Low_complexity 2 64 0 2 1036 1608 48 0 16 chr11 59115994 59116186 -62727670 + B2_Mm1a SINE B2 1 189 -4 2 1036 492 18 0 0 chr11 59116471 59116528 -62727328 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1036 236 100 0 24 chr11 59116544 59116585 -62727271 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 2 1036 390 17 16 33 chr11 59116587 59116648 -62727208 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1036 914 332 54 22 chr11 59116947 59117393 -62726463 - ERVL-B4-int LTR ERVL -3575 2139 1680 2 1036 198 0 0 0 chr11 59119373 59119395 -62724461 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1036 183 42 0 0 chr11 59120260 59120284 -62723572 + (CGG)n Simple_repeat Simple_repeat 1 24 0 2 1036 40 79 0 0 chr11 59120301 59120390 -62723466 + GC_rich Low_complexity Low_complexity 1 89 0 2 1036 35 54 0 0 chr11 59120575 59120631 -62723225 + GC_rich Low_complexity Low_complexity 1 56 0 2 1036 216 0 0 0 chr11 59122439 59122463 -62721393 + (TATG)n Simple_repeat Simple_repeat 2 25 0 2 1036 2150 226 64 75 chr11 59123501 59124252 -62719604 - L1MB7 LINE L1 -17 6167 5425 2 1036 333 0 0 0 chr11 59124288 59124325 -62719531 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1036 652 179 16 31 chr11 59124339 59124466 -62719390 - B1_Mur2 SINE Alu -3 146 22 2 1036 464 221 87 14 chr11 59124481 59124620 -62719236 - L1MB7 LINE L1 -784 5390 5239 2 1036 244 344 16 0 chr11 59128767 59128889 -62714967 + (TG)n Simple_repeat Simple_repeat 1 124 0 2 1036 287 299 92 58 chr11 59129271 59129445 -62714411 - MLT1B LTR MaLR -33 357 178 2 1036 1227 241 34 44 chr11 59129463 59129758 -62714098 - B4A SINE B4 0 292 1 2 1036 288 257 46 28 chr11 59130192 59130300 -62713556 + L1MEd LINE L1 953 1062 -5057 2 1036 262 314 276 5 chr11 59131872 59132173 -62711683 + L1MA7 LINE L1 5542 5927 -364 2 1036 752 314 40 5 chr11 59132182 59132402 -62711454 + B4A SINE B4 3 230 -62 2 1036 543 282 79 20 chr11 59132402 59132554 -62711302 + RSINE1 SINE B4 3 163 -2 2 1036 682 211 40 13 chr11 59132567 59132716 -62711140 - B3 SINE B2 -1 215 63 2 1036 306 227 0 83 chr11 59132758 59132830 -62711026 - B3A SINE B2 -130 68 3 2 1036 240 313 30 0 chr11 59132855 59132922 -62710934 + B4A SINE B4 208 276 -16 2 1036 384 77 0 0 chr11 59132947 59132999 -62710857 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1036 240 59 0 0 chr11 59133138 59133172 -62710684 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1036 745 215 35 0 chr11 59133172 59133316 -62710540 - B1_Mur3 SINE Alu 0 149 1 2 1036 859 289 152 26 chr11 59134474 59134882 -62708974 - L1MA8 LINE L1 -200 6091 5626 2 1036 1809 174 99 9 chr11 59134882 59135102 -62708754 + ORR1D1 LTR MaLR 2 228 -146 2 1036 207 0 0 0 chr11 59135102 59135125 -62708731 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 2 1036 1809 174 99 9 chr11 59135125 59135246 -62708610 + ORR1D1 LTR MaLR 229 372 -2 2 1036 859 210 227 20 chr11 59135246 59135483 -62708373 - L1MA8 LINE L1 -666 5625 5312 2 1036 803 185 168 0 chr11 59135484 59135657 -62708199 - B3 SINE B2 0 216 15 2 1036 827 262 35 5 chr11 59135956 59136159 -62707697 - B3 SINE B2 0 216 8 2 1036 631 274 26 57 chr11 59136152 59136380 -62707476 - ID_B1 SINE B4 -1 223 3 2 1036 222 205 0 0 chr11 59136401 59136440 -62707416 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1036 195 129 0 0 chr11 59136446 59136477 -62707379 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 1036 1871 179 86 0 chr11 59137401 59137775 -62706081 - MTC LTR MaLR -8 413 8 2 1036 231 208 37 19 chr11 59137793 59137847 -62706009 + CT-rich Low_complexity Low_complexity 4 58 0 2 1036 253 310 34 11 chr11 59137858 59137946 -62705910 - B1F1 SINE Alu -51 98 9 2 1036 715 81 54 9 chr11 59137990 59138102 -62705754 - B1_Mur3 SINE Alu 0 149 33 2 1036 282 56 0 0 chr11 59138122 59138158 -62705698 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1036 328 299 175 60 chr11 59138323 59138662 -62705194 - ORR1D2 LTR MaLR 0 374 1 2 1036 300 111 0 0 chr11 59138763 59138808 -62705048 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1036 207 0 0 0 chr11 59139196 59139219 -62704637 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1036 873 96 0 48 chr11 59139457 59139644 -62704212 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 2 1036 222 189 10 59 chr11 59139644 59139745 -62704111 + CT-rich Low_complexity Low_complexity 2 97 0 2 1036 672 79 54 24 chr11 59141557 59141725 -62702131 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 2 1036 32 43 0 0 chr11 59145538 59145584 -62698272 + AT_rich Low_complexity Low_complexity 1 46 0 2 1036 269 298 0 37 chr11 59147097 59147205 -62696651 + GA-rich Low_complexity Low_complexity 4 107 0 2 1036 225 348 0 0 chr11 59148303 59148392 -62695464 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1036 196 130 43 0 chr11 59149074 59149120 -62694736 + GA-rich Low_complexity Low_complexity 2 49 0 2 1036 184 100 50 0 chr11 59149526 59149566 -62694290 + (CTGGGG)n Simple_repeat Simple_repeat 6 47 0 2 1036 199 157 0 38 chr11 59150203 59150256 -62693600 + GA-rich Low_complexity Low_complexity 1 51 0 2 1036 772 86 1 16 chr11 59150542 59150668 -62693188 - B1_Mur4 SINE Alu 0 150 25 2 1036 405 0 0 0 chr11 59150797 59150842 -62693014 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1036 472 346 23 0 chr11 59151317 59151450 -62692406 + RSINE1 SINE B4 10 145 -20 2 1036 393 39 0 0 chr11 59151451 59151502 -62692354 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1036 276 320 8 67 chr11 59151640 59151774 -62692082 + MLT1J LTR MaLR 215 340 -172 2 1036 255 316 13 0 chr11 59151839 59151915 -62691941 + ID2 SINE ID 3 79 -4 2 1036 422 270 9 18 chr11 59152060 59152173 -62691683 + PB1D10 SINE Alu 1 112 -5 2 1036 558 0 0 0 chr11 59152175 59152237 -62691619 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 2 1036 342 216 81 0 chr11 59152237 59152311 -62691545 + ID4_ SINE ID 1 80 -3 2 1036 1135 87 11 23 chr11 59152862 59152884 -62690972 - B2_Mm2 SINE B2 -19 176 156 2 1036 378 0 0 0 chr11 59152884 59152926 -62690930 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 1036 1135 87 11 23 chr11 59152926 59153080 -62690776 - B2_Mm2 SINE B2 -40 155 2 2 1036 758 228 119 0 chr11 59153085 59153278 -62690578 - B3 SINE B2 0 216 1 2 1036 357 162 230 169 chr11 59153279 59153318 -62690538 - B3A SINE B2 -4 194 158 2 1036 234 0 0 0 chr11 59153318 59153344 -62690512 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1036 371 237 238 25 chr11 59153344 59153482 -62690374 - B3 SINE B2 -26 172 1 2 1036 589 236 8 8 chr11 59153581 59153705 -62690151 - B4A SINE B4 -16 276 153 2 1036 391 239 7 50 chr11 59153778 59153919 -62689937 + T-rich Low_complexity Low_complexity 1 135 0 2 1036 1367 109 0 35 chr11 59154471 59154495 -62689361 - B2_Mm2 SINE B2 -1 194 173 2 1036 1091 83 0 0 chr11 59154495 59154628 -62689228 + B1_Mus1 SINE Alu 2 134 -14 2 1036 1367 109 0 35 chr11 59154628 59154803 -62689053 - B2_Mm2 SINE B2 -23 172 2 2 1036 2111 176 37 5 chr11 59154858 59154909 -62688947 - ORR1B1 LTR MaLR 0 394 344 2 1036 1317 132 0 0 chr11 59154909 59155098 -62688758 - B2_Mm2 SINE B2 -6 189 1 3 1036 2111 176 37 5 chr11 59155098 59155428 -62688428 - ORR1B1 LTR MaLR -51 343 2 2 1036 934 157 0 0 chr11 59155513 59155653 -62688203 + B1_Mur4 SINE Alu 5 144 -6 3 1036 466 220 16 60 chr11 59158715 59158899 -62684957 + (CAGAGA)n Simple_repeat Simple_repeat 5 180 0 3 1036 352 235 7 7 chr11 59158939 59159076 -62684780 + GA-rich Low_complexity Low_complexity 1 137 0 3 1036 1035 211 157 20 chr11 59160550 59160850 -62683006 - ORR1D2 LTR MaLR -18 341 1 3 1036 1324 68 50 22 chr11 59160883 59161064 -62682792 + B2_Mm2 SINE B2 1 186 -9 3 1036 231 36 0 0 chr11 59161751 59161779 -62682077 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 3 1036 448 263 0 9 chr11 59161875 59161990 -62681866 + PB1D7 SINE Alu 5 118 -2 3 1036 216 285 187 30 chr11 59161879 59162013 -62681843 + B4A SINE B4 94 248 -44 3 1036 221 331 114 41 chr11 59162207 59162218 -62681638 - B3A SINE B2 0 198 188 3 1036 402 21 0 0 chr11 59162218 59162265 -62681591 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1036 273 296 67 14 chr11 59162265 59162376 -62681480 - B3 SINE B2 -11 187 67 3 1036 693 12 0 0 chr11 59163350 59163435 -62680421 + L1Md_T LINE L1 6498 6582 0 3 1036 183 196 21 21 chr11 59164493 59164587 -62679269 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 3 1036 530 124 35 28 chr11 59164624 59164765 -62679091 + (CATATA)n Simple_repeat Simple_repeat 3 144 0 3 1036 297 257 28 57 chr11 59164778 59164949 -62678907 + (CAGAGA)n Simple_repeat Simple_repeat 1 166 0 3 1036 429 20 0 0 chr11 59164949 59164999 -62678857 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1036 297 257 28 57 chr11 59164999 59165053 -62678803 + (CAGAGA)n Simple_repeat Simple_repeat 6 57 0 3 1036 1743 130 94 57 chr11 59165905 59166255 -62677601 + MTC LTR MaLR 1 363 -58 3 1036 1310 96 17 6 chr11 59166255 59166433 -62677423 + B2_Mm2 SINE B2 2 181 -14 3 1036 371 175 0 149 chr11 59166479 59166573 -62677283 + MTC LTR MaLR 328 421 0 3 1036 511 314 130 100 chr11 59166613 59166974 -62676882 - Lx8 LINE L1 -135 7338 6967 3 1036 1425 70 0 0 chr11 59167395 59167582 -62676274 + B2_Mm1t SINE B2 1 187 -6 3 1036 771 149 0 0 chr11 59167610 59167731 -62676125 + B3 SINE B2 3 123 -93 3 1036 270 0 0 0 chr11 59167783 59167813 -62676043 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1036 601 196 0 0 chr11 59167828 59167935 -62675921 + PB1D9 SINE Alu 1 107 -13 3 1036 210 71 0 0 chr11 59167936 59167964 -62675892 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1036 954 173 20 25 chr11 59168003 59168199 -62675657 + B2_Mm2 SINE B2 1 195 0 3 1036 252 77 0 0 chr11 59168702 59168741 -62675115 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1036 450 120 0 108 chr11 59169511 59169604 -62674252 - B1_Mur1 SINE Alu 0 149 67 3 1036 1261 82 10 42 chr11 59169623 59169815 -62674041 - B2_Mm2 SINE B2 -9 186 1 3 1036 290 367 8 0 chr11 59171051 59171179 -62672677 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1036 1706 167 19 129 chr11 59171542 59171962 -62671894 - ORR1D1 LTR MaLR 0 374 1 3 1036 2829 6 0 0 chr11 59172632 59172960 -62670896 + L1Md_A LINE L1 6255 6582 0 3 1036 231 36 0 0 chr11 59172986 59173014 -62670842 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1036 1592 31 0 5 chr11 59173024 59173218 -62670638 + B2_Mm1a SINE B2 1 193 0 3 1036 2069 60 26 84 chr11 59174026 59174089 -62669767 - ORR1A2 LTR MaLR 0 327 274 3 1036 1441 40 93 10 chr11 59174089 59174293 -62669563 - L1_Mus2 LINE L1 0 6566 6346 3 1036 2069 60 26 84 chr11 59174293 59174576 -62669280 - ORR1A2 LTR MaLR -54 273 1 3 1036 751 266 125 36 chr11 59174576 59174856 -62669000 - ORR1D2 LTR MaLR -62 308 4 3 1036 1317 84 0 0 chr11 59176654 59177205 -62666651 + (CA)n Simple_repeat Simple_repeat 1 551 0 3 1036 378 317 7 7 chr11 59178171 59178366 -62665490 + G-rich Low_complexity Low_complexity 1 195 0 3 1036 814 315 94 28 chr11 59179229 59179325 -62664531 - L1M3 LINE L1 -1770 4370 4273 3 1036 411 21 0 0 chr11 59179325 59179373 -62664483 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1036 814 315 94 28 chr11 59179373 59179808 -62664048 - L1M3 LINE L1 -1868 4272 3806 3 1036 725 225 72 54 chr11 59180707 59180928 -62662928 + B4 SINE B4 3 227 -65 3 1036 1149 55 7 0 chr11 59180930 59181076 -62662780 + B1_Mm SINE Alu 1 147 0 3 1036 990 133 79 23 chr11 59181112 59181289 -62662567 + B3 SINE B2 24 210 -6 3 1036 248 296 0 0 chr11 59181301 59181355 -62662501 + B4 SINE B4 239 292 0 3 1036 1503 52 0 10 chr11 59181687 59181882 -62661974 + B2_Mm2 SINE B2 3 195 0 3 1036 400 214 74 46 chr11 59182289 59182397 -62661459 - PB1D10 SINE Alu 0 117 7 3 1036 233 242 0 34 chr11 59182341 59182438 -62661418 - B4A SINE B4 -146 146 57 3 1036 1260 70 11 5 chr11 59182702 59182889 -62660967 + L1_Mus3 LINE L1 6445 6632 -6 3 1036 1079 92 0 0 chr11 59182891 59183033 -62660823 - B1_Mus1 SINE Alu -5 143 2 3 1036 284 333 37 0 chr11 59183034 59183142 -62660714 - PB1D10 SINE Alu -5 112 1 3 1036 574 286 82 0 chr11 59183142 59183211 -62660645 - ID SINE ID -143 81 1 3 1036 569 282 38 13 chr11 59184111 59184269 -62659587 - RSINE1 SINE B4 -2 163 2 3 1036 3250 35 5 0 chr11 59184598 59184992 -62658864 - MTA_Mm LTR MaLR 0 396 1 3 1036 374 312 9 0 chr11 59185265 59185374 -62658482 - PB1D10 SINE Alu -3 114 5 3 1036 367 311 176 11 chr11 59185370 59185552 -62658304 - MER2 DNA MER2_type -119 226 15 3 1036 1027 195 24 38 chr11 59185803 59186016 -62657840 - B3 SINE B2 -6 210 1 3 1036 255 271 82 66 chr11 59187401 59187583 -62656273 - L1MEf LINE L1 -5172 1028 844 3 1036 252 204 0 0 chr11 59189667 59189711 -62654145 + B1_Mus1 SINE Alu 6 49 -99 3 1036 1240 82 0 27 chr11 59189785 59189973 -62653883 - B2_Mm2 SINE B2 -10 185 3 3 1036 1145 69 0 0 chr11 59190328 59190473 -62653383 + B1_Mm SINE Alu 1 145 -2 3 1036 222 116 0 0 chr11 59190474 59190517 -62653339 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1036 753 229 15 46 chr11 59190529 59190726 -62653130 + B3 SINE B2 9 199 -17 3 1036 239 200 0 58 chr11 59190728 59190797 -62653059 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1036 255 182 14 43 chr11 59190799 59190868 -62652988 + B3 SINE B2 150 216 0 3 1036 344 338 93 15 chr11 59190883 59191087 -62652769 - MLT1A0 LTR MaLR -24 341 122 3 1036 269 356 28 28 chr11 59191569 59191748 -62652108 + L1MEg LINE L1 261 439 -5645 3 1036 323 374 85 10 chr11 59192111 59192311 -62651545 + L1MEg LINE L1 759 973 -5111 3 1036 207 241 23 35 chr11 59192332 59192504 -62651352 + CT-rich Low_complexity Low_complexity 3 172 0 3 1036 284 127 55 0 chr11 59192586 59192641 -62651215 - B1_Mur1 SINE Alu -2 147 90 3 1036 336 277 78 0 chr11 59192648 59192789 -62651067 + L1MB3 LINE L1 6005 6156 -27 3 1036 2140 92 65 134 chr11 59192869 59193331 -62650525 - RLTR23 LTR ERV1 0 430 1 3 1036 760 202 541 15 chr11 59193354 59193605 -62650251 + ORR1C2 LTR MaLR 1 384 0 3 1036 1629 267 89 8 chr11 59193699 59194428 -62649428 - L1MA4 LINE L1 -395 5905 5052 3 1036 807 179 7 0 chr11 59194614 59194754 -62649102 - B1_Mur2 SINE Alu -8 141 1 3 1036 1080 336 84 43 chr11 59194757 59194948 -62648908 - L1MA4 LINE L1 -2576 3567 3379 3 1036 1113 95 0 0 chr11 59194948 59195096 -62648760 - B1_Mus1 SINE Alu 0 148 1 3 1036 1080 336 84 43 chr11 59195096 59195906 -62647950 - L1MA4 LINE L1 -2765 3378 2525 3 1036 884 58 14 28 chr11 59195920 59196062 -62647794 + (TCTCCC)n Simple_repeat Simple_repeat 6 145 0 3 1036 226 354 12 0 chr11 59196082 59196164 -62647692 - ID SINE ID -137 87 5 3 1036 1133 166 40 0 chr11 59196329 59196528 -62647328 - MTC LTR MaLR -4 417 211 3 1036 387 0 0 0 chr11 59197088 59197131 -62646725 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1036 1204 82 59 16 chr11 59199829 59200016 -62643840 - B2_Mm2 SINE B2 0 195 1 3 1036 305 226 128 23 chr11 59200151 59200237 -62643619 + MTD LTR MaLR 6 100 -319 3 1036 438 53 0 0 chr11 59200246 59200303 -62643553 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1036 375 23 0 0 chr11 59200303 59200347 -62643509 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1036 359 284 68 59 chr11 59200418 59200536 -62643320 + MTD LTR MaLR 249 407 -12 3 1036 244 284 45 0 chr11 59200795 59200862 -62642994 + MTEb LTR MaLR 295 364 -15 3 1036 203 167 0 0 chr11 59201605 59201647 -62642209 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1036 283 232 0 23 chr11 59201676 59201848 -62642008 + (CA)n Simple_repeat Simple_repeat 1 168 0 3 1036 207 173 0 0 chr11 59201959 59202011 -62641845 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1036 558 0 0 0 chr11 59202176 59202238 -62641618 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 3 1036 1075 37 0 29 chr11 59202239 59202378 -62641478 - B1_Mus1 SINE Alu -12 136 2 3 1036 234 0 0 0 chr11 59203698 59203724 -62640132 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1036 4483 192 51 21 chr11 59203803 59204810 -62639046 - Lx9 LINE L1 0 7644 6608 3 1036 1288 68 11 0 chr11 59205191 59205367 -62638489 + B2_Mm1t SINE B2 2 179 -14 3 1036 1020 111 18 0 chr11 59205674 59205845 -62638011 + (GAA)n Simple_repeat Simple_repeat 1 174 0 3 1036 344 167 33 0 chr11 59205851 59205911 -62637945 - Lx9 LINE L1 -825 6819 6758 3 1036 750 125 33 0 chr11 59206187 59206307 -62637549 - B1_Mur4 SINE Alu -21 129 6 3 1036 396 181 17 118 chr11 59206206 59206325 -62637531 - MT2B LTR ERVL -340 261 155 3 1036 370 270 18 18 chr11 59206569 59206682 -62637174 + RSINE1 SINE B4 50 162 -3 3 1036 186 143 0 0 chr11 59206689 59206724 -62637132 + (TAA)n Simple_repeat Simple_repeat 1 35 0 3 1036 247 184 27 0 chr11 59206974 59207037 -62636819 + PB1D10 SINE Alu 2 67 -60 3 1036 411 21 0 0 chr11 59207499 59207547 -62636309 + (TCC)n Simple_repeat Simple_repeat 1 48 0 3 1036 604 185 50 0 chr11 59207585 59207704 -62636152 + RSINE1 SINE B4 2 126 -39 3 1036 344 312 83 53 chr11 59207787 59207919 -62635937 - ID_B1 SINE B4 -8 216 81 3 1036 489 216 53 26 chr11 59207954 59208068 -62635788 + PB1D10 SINE Alu 1 117 0 4 1036 914 201 27 54 chr11 59208545 59208766 -62635090 + B3 SINE B2 1 215 -1 4 1036 243 0 0 0 chr11 59209041 59209068 -62634788 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1036 249 127 84 0 chr11 59209103 59209174 -62634682 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 4 1036 342 200 0 14 chr11 59209192 59209263 -62634593 - B1_Mur1 SINE Alu -1 148 79 4 1036 278 106 0 21 chr11 59209275 59209290 -62634566 + (GA)n Simple_repeat Simple_repeat 2 16 0 4 1036 1123 107 0 11 chr11 59209290 59209470 -62634386 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 1036 278 106 0 21 chr11 59209470 59209502 -62634354 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1036 713 122 39 31 chr11 59209515 59209642 -62634214 + B1_Mus1 SINE Alu 15 142 -6 4 1036 320 232 149 113 chr11 59209529 59209670 -62634186 + B4 SINE B4 118 263 -29 4 1036 338 348 154 5 chr11 59212203 59212391 -62631465 + Tigger7 DNA MER2_type 57 272 -2219 4 1036 293 337 10 20 chr11 59212512 59212524 -62631332 - B4A SINE B4 -125 167 132 4 1036 385 200 14 0 chr11 59212524 59212594 -62631262 - B1F1 SINE Alu -78 71 1 4 1036 293 337 10 20 chr11 59212594 59212612 -62631244 - B4A SINE B4 -125 131 69 4 1036 360 0 0 0 chr11 59212761 59212801 -62631055 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1036 1404 58 20 25 chr11 59213981 59214177 -62629679 + B2_Mm2 SINE B2 1 195 0 4 1036 783 274 60 55 chr11 59214304 59214675 -62629181 - MTD LTR MaLR 0 379 6 4 1036 297 305 71 7 chr11 59214750 59214905 -62628951 + MLT1E3 LTR MaLR 7 171 -453 4 1036 299 279 101 66 chr11 59214957 59215159 -62628697 + MLT1E3 LTR MaLR 317 524 -130 4 1036 507 198 10 0 chr11 59215220 59215316 -62628540 + B1_Mur1 SINE Alu 46 142 -7 4 1036 734 191 179 5 chr11 59215324 59215479 -62628377 + B3 SINE B2 1 183 -33 4 1036 243 0 0 0 chr11 59215479 59215506 -62628350 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1036 734 191 179 5 chr11 59215506 59215534 -62628322 + B3 SINE B2 184 215 -1 4 1036 1243 77 27 16 chr11 59215540 59215726 -62628130 + B2_Mm1t SINE B2 1 188 -5 4 1036 445 302 24 0 chr11 59216001 59216127 -62627729 + ORR1E LTR MaLR 2 130 -229 4 1036 342 202 78 11 chr11 59216782 59216872 -62626984 + PB1D7 SINE Alu 10 105 -15 4 1036 614 169 0 84 chr11 59216935 59217077 -62626779 + B1_Mur1 SINE Alu 1 130 -19 4 1036 445 198 394 0 chr11 59218031 59218186 -62625670 - B3 SINE B2 0 216 1 4 1036 1431 84 23 14 chr11 59218213 59218414 -62625442 - MTB LTR MaLR 0 400 198 4 1036 1332 89 21 0 chr11 59218414 59218604 -62625252 - B2_Mm2 SINE B2 0 195 2 4 1036 1431 84 23 14 chr11 59218604 59218619 -62625237 - MTB LTR MaLR -203 197 183 4 1036 1140 48 7 7 chr11 59218639 59218787 -62625069 - B1_Mus1 SINE Alu 0 148 1 4 1036 376 260 133 10 chr11 59218878 59219075 -62624781 - L1MA5 LINE L1 -157 6146 5904 4 1036 385 257 30 0 chr11 59219110 59219211 -62624645 + PB1D9 SINE Alu 9 112 -8 4 1036 357 218 25 13 chr11 59219217 59219296 -62624560 + ID4 SINE ID 2 81 -2 4 1036 539 271 64 4 chr11 59219307 59219586 -62624270 + L1MA6 LINE L1 5783 6091 -209 4 1036 402 231 83 9 chr11 59219766 59219875 -62623981 + PB1D7 SINE Alu 2 118 -2 4 1036 201 39 0 0 chr11 59219875 59219901 -62623955 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1036 523 295 23 15 chr11 59223810 59223978 -62619878 + ID_B1 SINE B4 64 221 -3 4 1036 440 305 31 15 chr11 59225037 59225167 -62618689 + ID_B1 SINE B4 36 167 -57 4 1036 409 272 52 49 chr11 59225086 59225222 -62618634 + PB1D10 SINE Alu 5 149 0 4 1036 491 274 142 19 chr11 59227614 59227826 -62616030 - MER21B LTR ERV1 -294 569 332 4 1036 470 324 54 7 chr11 59227887 59228036 -62615820 - MER21B LTR ERV1 -654 209 54 4 1036 526 206 290 5 chr11 59228039 59228263 -62615593 + L1M4 LINE L1 2673 2960 -3186 4 1036 1043 203 19 5 chr11 59228476 59228684 -62615172 + B3 SINE B2 1 211 -5 4 1036 305 332 98 29 chr11 59228922 59229127 -62614729 + L1M4 LINE L1 4465 4683 -1463 4 1036 516 234 109 35 chr11 59229146 59229311 -62614545 + ID_B1 SINE B4 82 256 -36 4 1036 394 237 188 35 chr11 59229313 59229510 -62614346 + L1M4 LINE L1 4743 4969 -1177 4 1036 581 189 9 19 chr11 59229665 59229773 -62614083 + PB1D9 SINE Alu 5 111 -9 4 1036 24 0 0 0 chr11 59229793 59229817 -62614039 + AT_rich Low_complexity Low_complexity 1 24 0 4 1036 392 300 67 126 chr11 59230032 59230287 -62613569 + MER77 LTR ERVL 77 316 -291 4 1036 920 274 49 15 chr11 59230414 59230677 -62613179 + B4A SINE B4 2 273 -19 4 1036 215 61 30 0 chr11 59231470 59231503 -62612353 + (TTA)n Simple_repeat Simple_repeat 2 35 0 4 1036 598 225 41 34 chr11 59231511 59231658 -62612198 - B1_Mur1 SINE Alu 0 149 2 4 1036 421 182 273 0 chr11 59231660 59231748 -62612108 - RSINE1 SINE B4 -48 117 6 4 1036 677 260 143 6 chr11 59233702 59233884 -62609972 - B3 SINE B2 -9 207 1 4 1036 413 81 16 0 chr11 59233926 59233988 -62609868 + (TATG)n Simple_repeat Simple_repeat 1 63 0 4 1036 370 278 74 0 chr11 59234069 59234177 -62609679 - PB1D7 SINE Alu 0 120 5 4 1036 245 98 0 24 chr11 59234548 59234590 -62609266 + (CATA)n Simple_repeat Simple_repeat 4 44 0 4 1036 1106 138 202 0 chr11 59234718 59234906 -62608950 - URR1A DNA MER1_type 0 226 1 4 1036 1250 41 0 0 chr11 59235913 59236060 -62607796 + B1_Mus2 SINE Alu 1 147 0 4 1036 225 0 0 0 chr11 59236060 59236085 -62607771 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1036 2333 167 8 10 chr11 59237662 59238049 -62605807 + MTC LTR MaLR 34 419 -2 4 1036 1694 31 0 0 chr11 59238278 59238471 -62605385 + B2_Mm1t SINE B2 1 193 0 4 1036 1148 88 14 0 chr11 59241214 59241362 -62602494 + B1_Mur4 SINE Alu 1 150 0 4 1036 261 0 0 0 chr11 59242364 59242393 -62601463 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1036 922 55 11 0 chr11 59242393 59242520 -62601336 - B1_Mus2 SINE Alu -8 140 1 4 1036 368 216 61 105 chr11 59242420 59242534 -62601322 - MT2B LTR ERVL -337 264 156 4 1036 282 289 13 13 chr11 59242938 59243015 -62600841 - ID4 SINE ID -5 78 2 4 1036 392 323 100 57 chr11 59243058 59243357 -62600499 + L1MEc LINE L1 2190 2501 -3899 4 1036 534 284 74 25 chr11 59243371 59243573 -62600283 + L1MEc LINE L1 2577 2788 -3531 4 1036 1009 211 35 0 chr11 59243789 59243988 -62599868 + B3 SINE B2 1 206 -10 4 1036 999 150 0 0 chr11 59244131 59244278 -62599578 + B1_Mus1 SINE Alu 1 147 -1 4 1036 392 282 136 8 chr11 59244290 59244422 -62599434 + L1MD LINE L1 3014 3162 -2984 4 129 537 299 102 0 chr11 59244449 59244596 -62599260 + RSINE1 SINE B4 2 163 -2 4 1037 225 303 8 121 chr11 59244597 59244721 -62599135 + RMER12 LTR ERVK 720 829 -493 4 1037 1410 68 0 6 chr11 59244759 59244936 -62598920 + B2_Mm2 SINE B2 1 176 -19 4 1037 338 308 32 48 chr11 59245112 59245238 -62598618 + B4 SINE B4 71 194 -98 4 1037 602 179 0 70 chr11 59245131 59245245 -62598611 + B1_Mus1 SINE Alu 6 111 -37 4 1037 384 179 0 0 chr11 59245284 59245362 -62598494 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1037 321 232 110 0 chr11 59245364 59245446 -62598410 - L1M2 LINE L1 -498 5793 5703 4 1037 312 300 62 26 chr11 59246441 59246554 -62597302 - Tigger7 DNA MER2_type -9 2482 2366 4 1037 829 293 103 20 chr11 59246629 59246977 -62596879 - Tigger7 DNA MER2_type -2106 385 9 4 1037 260 232 54 0 chr11 59247566 59247622 -62596234 + B4A SINE B4 82 140 -152 4 1037 583 174 174 0 chr11 59247576 59247691 -62596165 + B1_Mus2 SINE Alu 10 144 -3 4 1037 5159 62 17 109 chr11 59247764 59248311 -62595545 + L1VL4 LINE L1 195 728 -5574 4 1037 1158 70 0 14 chr11 59248311 59248455 -62595401 - B1_Mus2 SINE Alu -1 146 5 4 1037 5159 62 17 109 chr11 59248455 59248511 -62595345 + L1VL4 LINE L1 729 768 -5534 4 1037 1209 62 0 0 chr11 59248511 59248657 -62595199 + B1_Mm SINE Alu 1 146 -1 4 1037 5159 62 17 109 chr11 59248657 59248746 -62595110 + L1VL4 LINE L1 769 832 -5470 4 1037 1377 75 32 0 chr11 59248746 59248932 -62594924 + B2_Mm1t SINE B2 2 193 0 4 1037 6650 63 34 26 chr11 59248932 59249987 -62593869 + L1VL4 LINE L1 833 1893 -1666 4 1037 4145 121 129 3 chr11 59249985 59250694 -62593162 + Lx2 LINE L1 5829 6636 -340 4 1037 1443 81 47 9 chr11 59250694 59250905 -62592951 + Lx2 LINE L1 6779 6997 0 4 1037 229 254 0 40 chr11 59250905 59250918 -62592938 + Lx2 LINE L1 6637 6648 -328 4 1037 208 214 0 41 chr11 59250939 59251012 -62592844 + A-rich Low_complexity Low_complexity 3 72 0 4 1037 198 0 0 0 chr11 59251129 59251151 -62592705 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1037 244 239 104 0 chr11 59252543 59252610 -62591246 - ID4 SINE ID -8 75 2 4 1037 433 260 129 8 chr11 59252613 59252745 -62591111 - B1F1 SINE Alu -1 148 1 4 1037 226 239 15 0 chr11 59252989 59253056 -62590800 + CT-rich Low_complexity Low_complexity 1 68 0 4 1037 691 275 131 97 chr11 59253851 59254367 -62589489 + L1M2c LINE L1 1492 2057 -4792 4 1037 513 264 111 39 chr11 59254367 59254520 -62589336 + B3A SINE B2 5 171 -27 4 1037 281 26 26 0 chr11 59254520 59254558 -62589298 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1037 513 264 111 39 chr11 59254558 59254585 -62589271 + B3A SINE B2 172 197 -1 4 1037 691 275 131 97 chr11 59254585 59254761 -62589095 + L1M2c LINE L1 2058 2208 -4641 4 1037 1233 165 35 174 chr11 59254768 59254946 -62588910 - ORR1C2 LTR MaLR 0 384 198 4 1037 288 53 0 0 chr11 59254946 59254984 -62588872 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1037 1233 196 50 144 chr11 59254984 59255192 -62588664 - ORR1C2 LTR MaLR -187 197 29 4 1037 246 250 0 0 chr11 59255188 59255236 -62588620 - ID4 SINE ID -34 49 2 4 1037 292 226 140 9 chr11 59255249 59255356 -62588500 + L1M2c LINE L1 2215 2335 -4514 4 1037 402 236 0 0 chr11 59255607 59255679 -62588177 - RMER4B LTR ERVK -181 404 333 4 1037 1179 155 45 5 chr11 59256710 59256911 -62586945 + B3 SINE B2 1 209 -7 4 1037 414 39 0 0 chr11 59257211 59257263 -62586593 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1037 1159 289 141 7 chr11 59257278 59257825 -62586031 - MER21B LTR ERV1 -105 758 114 4 1037 251 243 95 0 chr11 59258068 59258142 -62585714 + MIR SINE MIR 61 141 -121 4 1037 288 0 0 0 chr11 59258516 59258548 -62585308 + (CACCC)n Simple_repeat Simple_repeat 5 36 0 4 1037 1350 181 105 27 chr11 59258768 59259064 -62584792 - RMER5 LTR ERV1 -20 514 196 4 1037 617 192 158 0 chr11 59259163 59259283 -62584573 + B1_Mur3 SINE Alu 1 139 -10 5 1037 992 91 7 0 chr11 59259577 59259731 -62584125 + (TC)n Simple_repeat Simple_repeat 2 156 0 5 1037 1044 99 0 0 chr11 59259744 59259895 -62583961 + (TTCTCC)n Simple_repeat Simple_repeat 5 155 0 5 1037 239 21 20 59 chr11 59260152 59260187 -62583669 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1037 1197 61 0 20 chr11 59260187 59260338 -62583518 - B1_Mus1 SINE Alu 0 148 1 5 1037 239 21 20 59 chr11 59260338 59260353 -62583503 + (TTTTG)n Simple_repeat Simple_repeat 2 16 0 5 1037 557 262 85 43 chr11 59262007 59262242 -62581614 - MER21B LTR ERV1 -119 744 500 5 1037 694 309 85 52 chr11 59262287 59262594 -62581262 - MER21B LTR ERV1 -546 317 1 5 1037 335 328 0 8 chr11 59262762 59262879 -62580977 - PB1D10 SINE Alu 0 117 2 5 1037 270 127 0 48 chr11 59263198 59263281 -62580575 + C-rich Low_complexity Low_complexity 2 80 0 5 1037 631 279 92 104 chr11 59264832 59265236 -62578620 + MER47B DNA MER2_type 15 413 -5 5 1037 2468 125 64 25 chr11 59265654 59266090 -62577766 - RLTR11B LTR ERVK 0 453 1 5 1037 1237 61 0 0 chr11 59266153 59266300 -62577556 - B1_Mus2 SINE Alu 0 147 1 5 1037 268 207 17 0 chr11 59266335 59266393 -62577463 + MER53 DNA hAT 80 138 -55 5 1037 1147 203 92 89 chr11 59267844 59268158 -62575698 - MTE2a LTR MaLR -11 368 54 5 1037 639 117 9 64 chr11 59268147 59268257 -62575599 + B1_Mur4 SINE Alu 47 150 0 5 1037 255 170 3 22 chr11 59268263 59268317 -62575539 - MTE2a LTR MaLR -316 63 10 5 1037 246 62 0 0 chr11 59269480 59269512 -62574344 + (TATG)n Simple_repeat Simple_repeat 1 32 0 5 1037 1277 87 38 5 chr11 59269615 59269800 -62574056 - B2_Mm2 SINE B2 -2 193 3 5 1037 238 264 41 112 chr11 59271045 59271143 -62572713 + B4 SINE B4 2 92 -73 5 1037 387 271 320 31 chr11 59271527 59271786 -62572070 + L1M4 LINE L1 2891 3224 -2922 5 1037 1145 90 35 35 chr11 59271789 59271962 -62571894 + B2_Mm2 SINE B2 2 174 -21 5 1037 227 111 0 77 chr11 59271968 59272007 -62571849 + B1F1 SINE Alu 15 50 -99 5 1037 305 284 42 10 chr11 59272213 59272309 -62571547 - B4 SINE B4 -43 249 151 5 1037 277 143 179 0 chr11 59272269 59272325 -62571531 + B1_Mm SINE Alu 80 145 -2 5 1037 2880 74 58 3 chr11 59273066 59273445 -62570411 + MTB LTR MaLR 1 400 0 5 1037 21 57 0 0 chr11 59273610 59273645 -62570211 + AT_rich Low_complexity Low_complexity 1 35 0 5 1037 237 83 0 0 chr11 59274424 59274460 -62569396 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1037 1036 69 77 0 chr11 59274462 59274592 -62569264 - B1_Mus2 SINE Alu -7 140 1 5 1037 227 264 38 0 chr11 59275091 59275144 -62568712 - PB1D9 SINE Alu -65 55 1 5 1037 212 303 167 0 chr11 59275144 59275156 -62568700 - B4A SINE B4 -151 140 65 5 1037 203 198 80 32 chr11 59275394 59275519 -62568337 + (CTATA)n Simple_repeat Simple_repeat 3 133 0 5 1037 255 295 16 32 chr11 59276273 59276399 -62567457 - MMSAT4 Satellite Satellite -14 154 31 5 1037 448 344 31 40 chr11 59276703 59277589 -62566267 - MurSatRep1 Unknown Unknown -85 2052 1630 5 1037 1304 108 5 0 chr11 59278176 59278362 -62565494 + B2_Mm1t SINE B2 7 193 0 5 1037 683 199 63 8 chr11 59278759 59278939 -62564917 + B3 SINE B2 9 193 -2 5 1037 817 189 0 0 chr11 59278946 59279094 -62564762 - MurSatRep1 Unknown Unknown -1392 745 598 5 1037 2401 124 0 6 chr11 59279967 59280315 -62563541 + ORR1A1 LTR MaLR 1 346 0 5 1037 515 45 0 29 chr11 59280322 59280391 -62563465 + B1_Mus2 SINE Alu 81 147 0 5 1037 434 292 9 17 chr11 59280478 59280593 -62563263 + PB1D9 SINE Alu 2 115 -5 5 1037 951 161 0 14 chr11 59280657 59280802 -62563054 + B1_Mur4 SINE Alu 2 144 -6 5 1037 1461 50 16 16 chr11 59280830 59281014 -62562842 + B2_Mm2 SINE B2 1 184 -11 5 1037 412 299 46 18 chr11 59281281 59281499 -62562357 + L1MD LINE L1 2450 2673 -3473 5 1037 301 286 43 158 chr11 59281554 59281857 -62561999 + L1MC LINE L1 2801 3068 -3078 5 1037 495 248 14 55 chr11 59281999 59282144 -62561712 + B3A SINE B2 60 198 0 5 1037 2112 185 50 5 chr11 59282417 59282818 -62561038 + MTC LTR MaLR 3 421 0 5 1037 666 207 29 29 chr11 59283038 59283177 -62560679 + B1_Mur1 SINE Alu 10 148 -1 5 1037 942 94 0 0 chr11 59283450 59283577 -62560279 + B1_Mus2 SINE Alu 18 144 -3 5 1037 953 134 49 22 chr11 59283999 59284182 -62559674 + B2_Mm2 SINE B2 1 188 -7 5 1037 1325 94 33 0 chr11 59284188 59284369 -62559487 + B2_Mm1t SINE B2 1 187 -6 5 1037 1283 102 32 0 chr11 59284373 59284559 -62559297 + B2_Mm2 SINE B2 1 192 -3 5 1037 900 225 0 51 chr11 59284886 59285083 -62558773 + B3A SINE B2 1 187 -11 5 1037 582 60 0 0 chr11 59286236 59286319 -62557537 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 5 1037 544 283 146 27 chr11 59286408 59286593 -62557263 - ID_B1 SINE B4 -10 214 8 5 1037 1738 242 195 2 chr11 59286638 59287085 -62556771 + MT2A LTR ERVL 1 533 0 5 1037 207 0 0 0 chr11 59287161 59287184 -62556672 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1037 1211 68 0 0 chr11 59287184 59287332 -62556524 - B1_Mus1 SINE Alu 0 148 1 5 1037 1509 49 22 0 chr11 59289607 59289790 -62554066 + B2_Mm1t SINE B2 1 187 -6 5 1037 1248 26 0 44 chr11 59290525 59290559 -62553297 + B2_Mm2 SINE B2 2 33 -162 5 1037 4360 147 99 71 chr11 59290559 59291436 -62552420 + RMER19B LTR ERVK 1 902 0 5 1037 1248 27 0 44 chr11 59291436 59291562 -62552294 + B2_Mm2 SINE B2 34 156 -37 5 1037 212 0 0 35 chr11 59291562 59291591 -62552265 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 5 1037 1077 115 16 54 chr11 59291591 59291613 -62552243 + B2_Mm1t SINE B2 157 178 -15 5 1037 1130 58 0 7 chr11 59291696 59291834 -62552022 + B1_Mm SINE Alu 2 138 -9 5 1037 279 0 0 0 chr11 59291834 59291865 -62551991 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1037 1406 95 26 0 chr11 59291920 59292110 -62551746 - B2_Mm2 SINE B2 0 195 1 5 1037 230 0 33 0 chr11 59292135 59292165 -62551691 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 5 1037 744 204 21 47 chr11 59292221 59292411 -62551445 - B2_Mm2 SINE B2 -9 186 2 5 1037 667 268 5 53 chr11 59292414 59292603 -62551253 - B3A SINE B2 -16 182 3 5 1037 547 195 186 0 chr11 59292728 59292841 -62551015 + B1_Mur1 SINE Alu 1 134 -15 5 1037 465 19 0 0 chr11 59292841 59292895 -62550961 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1037 392 0 21 0 chr11 59292895 59292942 -62550914 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1037 1277 47 0 0 chr11 59293051 59293199 -62550657 - B1_Mus1 SINE Alu 0 148 1 5 1037 408 314 37 19 chr11 59293522 59293684 -62550172 - RMER15-int LTR ERVL -4685 314 150 5 1037 432 0 0 0 chr11 59293858 59293906 -62549950 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1037 602 297 93 29 chr11 59293908 59294154 -62549702 - RMER15 LTR ERVL -41 534 273 5 1037 931 223 23 0 chr11 59294303 59294478 -62549378 - B3 SINE B2 -2 214 36 5 1037 984 232 29 15 chr11 59294665 59294871 -62548985 - B3 SINE B2 0 216 8 5 1037 283 250 47 0 chr11 59294883 59294947 -62548909 - RMER15 LTR ERVL -508 67 1 5 1037 1243 48 0 0 chr11 59295126 59295273 -62548583 - B1_Mm SINE Alu 0 147 1 5 1037 244 114 0 0 chr11 59295815 59295850 -62548006 + B1_Mus1 SINE Alu 2 36 -112 5 1037 1264 111 16 26 chr11 59296276 59296308 -62547548 - B2_Mm2 SINE B2 -3 192 162 5 1037 261 0 0 0 chr11 59296308 59296337 -62547519 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5 1037 1264 111 16 26 chr11 59296337 59296498 -62547358 - B2_Mm2 SINE B2 -34 161 1 5 1037 287 268 17 171 chr11 59296507 59296550 -62547306 - PB1 SINE Alu -26 101 74 5 1037 1194 64 0 0 chr11 59296550 59296691 -62547165 - B1_Mus2 SINE Alu -6 141 1 5 1037 287 268 17 171 chr11 59296691 59296764 -62547092 - PB1 SINE Alu -54 73 3 5 1037 242 275 20 81 chr11 59297054 59297153 -62546703 + B2_Mm2 SINE B2 6 98 -97 5 1037 285 151 0 117 chr11 59297494 59297554 -62546302 - B1F SINE Alu 0 149 97 5 1037 327 49 0 0 chr11 59297554 59297595 -62546261 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 5 1037 495 0 0 0 chr11 59297595 59297649 -62546207 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1037 559 191 0 68 chr11 59297800 59297918 -62545938 + PB1D9 SINE Alu 1 110 -10 5 1037 223 323 31 0 chr11 59297986 59298051 -62545805 + PB1D10 SINE Alu 17 83 -34 5 1037 235 286 0 0 chr11 59298090 59298146 -62545710 + BC1_Mm scRNA scRNA 38 93 -59 5 1037 656 268 97 21 chr11 59299559 59299954 -62543902 + MLT1C LTR MaLR 16 463 -4 5 1037 1113 43 57 14 chr11 59301608 59301748 -62542108 + B1_Mus2 SINE Alu 2 147 0 5 1037 786 83 19 0 chr11 59302023 59302131 -62541725 + B1_Mus1 SINE Alu 2 111 -37 5 1037 301 186 28 14 chr11 59302258 59302329 -62541527 + PB1D10 SINE Alu 1 72 -45 5 1037 749 174 72 7 chr11 59302334 59302473 -62541383 + B1_Mus1 SINE Alu 1 148 0 5 1037 368 298 204 5 chr11 59302736 59302952 -62540904 + MLT1B LTR MaLR 98 356 -34 5 1037 348 252 144 0 chr11 59302979 59303090 -62540766 + B3A SINE B2 69 195 -3 5 1037 588 286 103 56 chr11 59303143 59303534 -62540322 + MLT1B-int LTR MaLR 51 569 -802 5 1037 189 0 0 0 chr11 59303578 59303599 -62540257 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1037 249 318 30 0 chr11 59303682 59303748 -62540108 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 5 1037 251 267 38 62 chr11 59303791 59303871 -62539985 + ID4_ SINE ID 6 83 0 5 1037 742 193 27 7 chr11 59303891 59304037 -62539819 + B1_Mur1 SINE Alu 1 149 0 5 1037 375 256 9 80 chr11 59304340 59304480 -62539376 + B3A SINE B2 87 214 -2 5 1037 1360 211 114 0 chr11 59304514 59304865 -62538991 + MTC-int LTR MaLR 3 393 -865 5 1037 1199 61 0 0 chr11 59304865 59305012 -62538844 + B1_Mus1 SINE Alu 2 148 0 5 1037 1078 103 7 0 chr11 59305035 59305181 -62538675 + B1_Mus1 SINE Alu 2 148 0 5 1037 359 127 70 0 chr11 59305202 59305273 -62538583 + MTC-int LTR MaLR 376 451 -807 5 1037 576 40 0 0 chr11 59306115 59306190 -62537666 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1037 1030 130 14 0 chr11 59307539 59307685 -62536171 + B1_Mur4 SINE Alu 3 150 0 6 1037 27 0 0 0 chr11 59308289 59308316 -62535540 + AT_rich Low_complexity Low_complexity 1 27 0 6 1037 937 214 60 0 chr11 59308320 59308521 -62535335 - B3 SINE B2 -3 213 1 6 1037 21 0 0 0 chr11 59308669 59308690 -62535166 + AT_rich Low_complexity Low_complexity 1 21 0 6 1037 1017 206 19 29 chr11 59308692 59308902 -62534954 - B3 SINE B2 -6 210 3 6 1037 417 221 123 19 chr11 59308908 59309014 -62534842 - PB1D10 SINE Alu 0 117 1 6 1037 1267 92 27 16 chr11 59310035 59310222 -62533634 - B2_Mm2 SINE B2 -5 190 2 6 1037 344 139 319 0 chr11 59310600 59310672 -62533184 + B3 SINE B2 1 95 -121 6 1037 451 228 38 95 chr11 59310928 59311070 -62532786 + B1F1 SINE Alu 1 127 -21 6 1037 1063 215 20 0 chr11 59311368 59311568 -62532288 - B3 SINE B2 -11 205 2 6 1037 793 203 132 66 chr11 59311624 59311851 -62532005 - B4 SINE B4 -35 257 16 6 1037 396 0 0 0 chr11 59312323 59312367 -62531489 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1037 495 0 0 0 chr11 59312698 59312753 -62531103 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 6 1037 271 207 214 24 chr11 59313468 59313552 -62530304 + PB1D10 SINE Alu 12 111 -6 6 1037 417 241 13 0 chr11 59313558 59313637 -62530219 + RSINE1 SINE B4 1 80 -85 6 1037 546 282 112 4 chr11 59313828 59314088 -62529768 + L1M2 LINE L1 5498 5785 -527 6 1037 225 0 0 0 chr11 59314228 59314253 -62529603 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1037 349 188 245 20 chr11 59314341 59314439 -62529417 + B1_Mur2 SINE Alu 29 148 -1 6 1037 775 283 136 7 chr11 59315010 59315319 -62528537 + MLT1B LTR MaLR 11 359 -31 6 1037 375 23 0 0 chr11 59315427 59315471 -62528385 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1037 351 202 37 0 chr11 59315503 59315585 -62528271 + B1F1 SINE Alu 2 86 -63 6 1037 294 250 15 0 chr11 59315654 59315722 -62528134 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 6 1037 21 57 0 0 chr11 59318184 59318219 -62525637 + AT_rich Low_complexity Low_complexity 1 35 0 6 1037 207 0 0 0 chr11 59318258 59318281 -62525575 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1037 201 162 0 26 chr11 59319187 59319225 -62524631 + GA-rich Low_complexity Low_complexity 2 38 0 6 1037 186 43 0 0 chr11 59319870 59319893 -62523963 + (CCCCG)n Simple_repeat Simple_repeat 3 25 0 6 1037 25 51 0 0 chr11 59319959 59319998 -62523858 + GC_rich Low_complexity Low_complexity 1 39 0 6 1037 192 312 50 70 chr11 59321404 59321504 -62522352 + MIRm SINE MIR 92 189 -87 6 1037 1414 82 38 0 chr11 59321934 59322117 -62521739 - B2_Mm2 SINE B2 -4 191 2 6 1037 417 202 81 88 chr11 59322227 59322363 -62521493 + B1F SINE Alu 14 148 -1 6 1037 515 169 92 92 chr11 59322730 59322860 -62520996 + B1_Mur4 SINE Alu 1 130 -20 6 1037 183 80 0 0 chr11 59323659 59323684 -62520172 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1037 1129 59 0 0 chr11 59323686 59323822 -62520034 + B1_Mus2 SINE Alu 2 137 -10 6 1037 189 0 0 0 chr11 59323822 59323843 -62520013 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1037 354 236 45 45 chr11 59324008 59324119 -62519737 + PB1D10 SINE Alu 2 112 -5 6 1037 692 244 114 20 chr11 59324153 59324354 -62519502 + ID_B1 SINE B4 3 222 -2 6 1037 686 143 26 9 chr11 59324469 59324582 -62519274 - PB1D9 SINE Alu -5 115 1 6 1037 529 248 86 13 chr11 59324596 59324747 -62519109 - RSINE1 SINE B4 0 165 4 6 1037 497 260 85 20 chr11 59324764 59324964 -62518892 - L1MA5 LINE L1 -377 5923 5711 6 1037 396 173 62 0 chr11 59324967 59325048 -62518808 - RMER5 LTR ERV1 -230 304 219 6 1037 240 179 179 0 chr11 59325109 59325165 -62518691 - RMER5 LTR ERV1 -402 132 67 6 1037 1812 128 161 20 chr11 59325288 59325630 -62518226 + RLTR18 LTR ERVK 1 390 -226 6 1037 1579 52 5 0 chr11 59325630 59325821 -62518035 + B2_Mm1t SINE B2 2 193 0 6 1037 1152 49 21 0 chr11 59326122 59326266 -62517590 + B1_Mus1 SINE Alu 2 148 0 6 1037 500 293 109 0 chr11 59326283 59326457 -62517399 - RMER20B LTR ERVK -294 333 141 6 1037 1186 156 36 27 chr11 59326614 59326838 -62517018 + RLTR18 LTR ERVK 391 616 0 6 1037 774 219 60 22 chr11 59327159 59327341 -62516515 - B3 SINE B2 0 216 28 6 1037 941 156 0 0 chr11 59327396 59327537 -62516319 - B1_Mur1 SINE Alu -8 141 1 6 1037 381 223 83 97 chr11 59327543 59327687 -62516169 + MT2B LTR ERVL 116 257 -344 6 1037 422 309 57 85 chr11 59327575 59327588 -62516268 + B4 SINE B4 77 132 -160 6 1037 800 181 7 21 chr11 59327588 59327729 -62516127 + B1_Mur4 SINE Alu 6 144 -6 6 1037 422 309 57 85 chr11 59327729 59327752 -62516104 + B4 SINE B4 133 248 -44 6 1037 959 69 92 0 chr11 59328028 59328159 -62515697 - B1_Mus2 SINE Alu -1 146 4 6 1037 229 309 71 26 chr11 59328196 59328309 -62515547 - MER88 LTR ERVL -342 122 5 6 1037 222 315 122 65 chr11 59328938 59329077 -62514779 - B1F SINE Alu 0 149 3 6 1037 2059 162 29 34 chr11 59329821 59330205 -62513651 + RLTR14 LTR ERV1 1 382 0 6 1037 204 125 0 0 chr11 59330393 59330425 -62513431 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1037 1145 71 14 0 chr11 59330428 59330569 -62513287 - B1_Mus2 SINE Alu -4 143 1 6 1037 225 154 0 0 chr11 59330751 59330790 -62513066 + (CAT)n Simple_repeat Simple_repeat 2 40 0 6 1037 852 207 162 37 chr11 59330798 59331039 -62512817 + MTD LTR MaLR 133 403 -16 6 1037 230 337 107 19 chr11 59331063 59331166 -62512690 - PB1D10 SINE Alu -3 114 3 6 1037 238 333 0 27 chr11 59331095 59331169 -62512687 - ID_B1 SINE B4 -72 152 81 6 1037 369 0 0 0 chr11 59331176 59331217 -62512639 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1037 424 138 90 60 chr11 59331714 59331814 -62512042 - RLTR19C LTR ERVK -400 106 4 6 1037 293 238 48 0 chr11 59331984 59332047 -62511809 - B1F SINE Alu -36 113 48 6 1037 21 0 0 0 chr11 59332053 59332074 -62511782 + AT_rich Low_complexity Low_complexity 1 21 0 6 1037 180 0 0 0 chr11 59332238 59332258 -62511598 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 6 1037 633 89 79 0 chr11 59332783 59332884 -62510972 + B1_Mur3 SINE Alu 27 135 -14 6 1037 1296 241 77 19 chr11 59332890 59333254 -62510602 + RMER5 LTR ERV1 43 427 -107 6 1037 611 200 69 0 chr11 59333584 59333714 -62510142 + RMER5 LTR ERV1 396 534 0 6 1037 379 286 8 48 chr11 59333780 59333792 -62510064 - B1_Mur4 SINE Alu -21 129 119 6 1037 288 0 0 0 chr11 59333792 59333824 -62510032 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1037 448 270 8 34 chr11 59333824 59333943 -62509913 - B1F2 SINE Alu -32 117 2 6 1037 235 271 128 59 chr11 59334027 59334129 -62509727 + B1_Mur2 SINE Alu 1 109 -40 6 1037 342 0 0 0 chr11 59334421 59334459 -62509397 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1037 717 12 0 0 chr11 59334969 59335051 -62508805 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 6 1037 787 120 0 49 chr11 59335055 59335156 -62508700 - B1_Mur1 SINE Alu -31 118 21 6 1037 2681 159 27 77 chr11 59335156 59335713 -62508143 - RLTR24 LTR ERV1 0 529 1 6 1037 787 120 0 49 chr11 59335713 59335734 -62508122 - B1_Mur1 SINE Alu -129 20 2 6 1037 208 259 23 23 chr11 59335739 59335826 -62508030 + T-rich Low_complexity Low_complexity 2 88 0 6 1037 328 264 121 7 chr11 59335826 59335946 -62507910 - B3 SINE B2 0 216 81 6 1037 1189 70 0 0 chr11 59335946 59336089 -62507767 + B1_Mus2 SINE Alu 1 143 -4 6 1037 328 264 121 7 chr11 59336089 59336109 -62507747 - B3 SINE B2 -136 80 61 6 1037 270 128 0 0 chr11 59336094 59336133 -62507723 - B1_Mus1 SINE Alu -109 39 1 6 1037 305 271 29 0 chr11 59336133 59336197 -62507659 - B1F1 SINE Alu -75 74 9 6 1037 534 202 103 52 chr11 59336145 59336281 -62507575 - ID_B1 SINE B4 -81 143 1 6 1037 324 0 0 0 chr11 59337229 59337265 -62506591 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1037 1224 48 0 7 chr11 59337510 59337657 -62506199 + B1_Mm SINE Alu 2 147 0 6 1037 749 200 76 30 chr11 59337767 59337956 -62505900 - B3 SINE B2 -10 206 29 6 1037 219 290 128 20 chr11 59339198 59339300 -62504556 - ID_B1 SINE B4 -28 196 84 6 1037 237 211 0 55 chr11 59339300 59339355 -62504501 + MER21B LTR ERV1 662 713 -150 6 1037 936 127 7 0 chr11 59339499 59339641 -62504215 + B1_Mus1 SINE Alu 4 146 -2 6 1037 238 330 33 22 chr11 59339722 59339812 -62504044 + U1 snRNA snRNA 21 111 -54 6 1037 217 157 0 136 chr11 59339788 59339847 -62504009 - B1_Mur4 SINE Alu -99 51 1 6 1037 642 89 0 0 chr11 59340244 59340334 -62503522 + (GGGA)n Simple_repeat Simple_repeat 3 92 0 6 1037 889 135 149 98 chr11 59340840 59341054 -62502802 + URR1B DNA MER1_type 1 225 0 6 1037 241 308 185 6 chr11 59341223 59341380 -62502476 - MER31B LTR ERV1 0 466 282 6 1037 696 200 0 0 chr11 59341427 59341602 -62502254 + (TG)n Simple_repeat Simple_repeat 1 175 0 6 1037 253 175 0 0 chr11 59341740 59341780 -62502076 + MER31A LTR ERV1 3 42 -443 6 1037 262 276 16 0 chr11 59341776 59341851 -62502005 - ID4 SINE ID -57 95 20 6 1037 352 182 23 0 chr11 59341851 59341939 -62501917 + C-rich Low_complexity Low_complexity 1 90 0 6 1037 1143 71 7 0 chr11 59341952 59342093 -62501763 - B1_Mus1 SINE Alu -5 143 2 6 1037 755 259 76 33 chr11 59342127 59342352 -62501504 + MER31A LTR ERV1 31 271 -214 6 1037 906 260 24 0 chr11 59342352 59342560 -62501296 - B3 SINE B2 -3 213 1 6 1037 755 259 76 33 chr11 59342560 59342609 -62501247 + MER31A LTR ERV1 272 317 -168 6 1037 1795 195 57 26 chr11 59342632 59343017 -62500839 + MTD LTR MaLR 15 411 -8 6 1037 3896 157 156 31 chr11 59343030 59343832 -62500024 - RMER19B LTR ERVK 0 902 1 7 1037 180 0 0 0 chr11 59344377 59344397 -62499459 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 7 1037 3796 233 87 118 chr11 59344534 59345053 -62498803 + RMER1A Other Other 1 464 -602 7 1037 405 58 0 0 chr11 59345053 59345105 -62498751 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1037 3796 181 179 4 chr11 59345105 59345774 -62498082 + RMER1A Other Other 229 1018 -12 7 1037 1036 116 0 0 chr11 59345798 59345936 -62497920 + B1_Mur3 SINE Alu 2 139 -10 7 1037 294 29 0 0 chr11 59345936 59345971 -62497885 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1037 596 235 71 173 chr11 59345972 59346125 -62497731 - ID_B1 SINE B4 -15 209 85 7 1037 2888 80 12 8 chr11 59346125 59346526 -62497330 + RLTR9D LTR ERVK 1 403 0 7 1037 596 235 71 173 chr11 59346526 59346598 -62497258 - ID SINE ID -140 84 7 7 1037 576 252 16 0 chr11 59346611 59346734 -62497122 + ID_B1 SINE B4 85 209 -15 7 1037 594 0 0 0 chr11 59346741 59346807 -62497049 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 7 1037 255 325 13 0 chr11 59346807 59346884 -62496972 + ID4 SINE ID 5 82 -1 7 1037 2718 197 49 16 chr11 59347118 59347669 -62496187 - RMER15 LTR ERVL 0 575 7 7 1037 2971 151 4 70 chr11 59347931 59348492 -62495364 + RLTR28 LTR ERVL 1 524 0 7 1037 393 22 0 0 chr11 59348530 59348576 -62495280 + (TATG)n Simple_repeat Simple_repeat 2 47 0 7 1037 340 371 0 56 chr11 59348802 59348962 -62494894 - MLT1A1 LTR MaLR -2 406 256 7 1037 456 161 0 0 chr11 59348964 59349045 -62494811 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 7 1037 835 220 43 43 chr11 59349045 59349230 -62494626 - B3 SINE B2 -28 188 4 7 1037 455 293 135 42 chr11 59349239 59349431 -62494425 - ID_B1 SINE B4 0 224 15 7 1037 394 303 28 0 chr11 59349516 59349625 -62494231 + PB1D10 SINE Alu 1 112 -5 7 1037 465 19 0 0 chr11 59349663 59349717 -62494139 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1037 239 229 9 150 chr11 59350163 59350276 -62493580 + RLTR25B LTR ERVK 418 514 -514 7 1037 641 187 0 9 chr11 59350191 59350299 -62493557 + B1_Mur2 SINE Alu 37 143 -6 7 1037 483 100 0 0 chr11 59350299 59350369 -62493487 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 7 1037 435 250 0 0 chr11 59350380 59350464 -62493392 + B3A SINE B2 1 84 -114 7 1037 955 205 103 0 chr11 59350495 59350690 -62493166 - B3 SINE B2 0 216 2 7 1037 459 317 0 0 chr11 59350860 59350980 -62492876 - ORR1E LTR MaLR -238 121 2 7 1037 263 217 67 0 chr11 59350980 59351040 -62492816 + Charlie4a DNA MER1_type 390 453 -55 7 1037 329 246 32 84 chr11 59352137 59352292 -62491564 + L1M5 LINE L1 5454 5600 -579 7 1037 698 238 111 15 chr11 59352324 59352595 -62491261 - L1M3 LINE L1 -186 5691 5429 7 1037 478 286 56 14 chr11 59352598 59352740 -62491116 - B1F SINE Alu -1 148 1 7 1037 294 95 0 0 chr11 59352756 59352798 -62491058 + (ATG)n Simple_repeat Simple_repeat 2 43 0 7 1037 481 271 75 8 chr11 59352798 59352932 -62490924 + Lx8 LINE L1 6562 6704 -769 7 1037 440 149 73 137 chr11 59352932 59353022 -62490834 + B3 SINE B2 101 193 -23 7 1037 183 42 0 0 chr11 59353022 59353046 -62490810 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 7 1037 440 149 73 137 chr11 59353046 59353079 -62490777 + B3 SINE B2 194 216 0 7 1037 189 0 0 0 chr11 59353089 59353110 -62490746 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1037 412 271 71 19 chr11 59353120 59353274 -62490582 - Lx8 LINE L1 -400 7073 6912 7 1037 855 157 0 22 chr11 59353293 59353430 -62490426 + B1_Mur2 SINE Alu 2 135 -14 7 1037 201 74 0 0 chr11 59353430 59353457 -62490399 + (TAA)n Simple_repeat Simple_repeat 2 28 0 7 1037 411 271 220 0 chr11 59353537 59353655 -62490201 - RSINE1 SINE B4 -19 146 3 7 1037 302 325 38 0 chr11 59353664 59353744 -62490112 - ID SINE ID -141 83 1 7 1037 545 292 111 23 chr11 59353848 59354198 -62489658 - L1M3 LINE L1 -854 5286 4906 7 1037 864 252 139 55 chr11 59356916 59357346 -62486510 - L1MB2 LINE L1 0 6171 5725 7 1037 232 276 0 33 chr11 59357737 59357797 -62486059 + ID4 SINE ID 4 61 -22 7 1037 595 248 79 20 chr11 59358027 59358179 -62485677 - RSINE1 SINE B4 -4 161 1 7 1037 673 186 6 110 chr11 59358181 59358198 -62485658 + B1_Mus1 SINE Alu 3 14 -134 7 1037 1123 80 96 6 chr11 59358198 59358375 -62485481 - B2_Mm1t SINE B2 0 193 1 7 1037 706 179 7 70 chr11 59358375 59358520 -62485336 + B1_Mur4 SINE Alu 15 150 0 7 1037 1050 205 15 10 chr11 59358544 59358746 -62485110 - B3 SINE B2 -9 207 5 7 1037 310 308 75 8 chr11 59358751 59358885 -62484971 - MIR SINE MIR -43 219 77 7 1037 392 229 241 7 chr11 59359142 59359284 -62484572 - ID_B1 SINE B4 -42 182 8 7 1037 814 245 7 7 chr11 59359985 59360147 -62483709 - ID_B1 SINE B4 -46 246 82 7 1037 584 59 0 38 chr11 59360743 59360849 -62483007 + (TA)n Simple_repeat Simple_repeat 2 103 0 7 1037 1211 68 0 0 chr11 59360852 59360998 -62482858 - B1_Mm SINE Alu -1 146 1 7 1037 612 146 0 0 chr11 59363299 59363402 -62480454 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 7 1037 251 338 82 58 chr11 59363731 59363938 -62479918 - MLT1A0 LTR MaLR -149 216 5 7 1037 820 280 4 94 chr11 59364231 59364314 -62479542 - ID_B1 SINE B4 -5 219 152 7 1037 666 0 0 0 chr11 59364314 59364388 -62479468 + (TTC)n Simple_repeat Simple_repeat 2 75 0 7 1037 1113 60 0 0 chr11 59364392 59364526 -62479330 - B1_Mus2 SINE Alu -13 134 1 7 1037 820 280 4 94 chr11 59364526 59364670 -62479186 - ID_B1 SINE B4 -73 151 8 7 1037 1622 32 0 26 chr11 59364772 59364967 -62478889 - B2_Mm1a SINE B2 -2 191 2 7 1037 315 0 0 0 chr11 59365450 59365485 -62478371 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1037 597 294 61 35 chr11 59365617 59365846 -62478010 - MLT1B LTR MaLR -76 314 80 7 1037 272 226 0 0 chr11 59366314 59366367 -62477489 - FAM SINE Alu -1 314 262 7 1037 312 253 77 0 chr11 59366336 59366427 -62477429 - PB1 SINE Alu -12 115 18 7 1037 926 228 22 6 chr11 59366763 59366922 -62476934 - B3 SINE B2 0 216 63 7 1037 361 185 14 35 chr11 59366922 59367037 -62476819 + B3A SINE B2 1 215 -1 7 1037 265 117 0 91 chr11 59367251 59367317 -62476539 - B2_Mm2 SINE B2 0 195 136 7 1037 1371 73 22 0 chr11 59367336 59367514 -62476342 - B2_Mm2 SINE B2 -13 182 1 7 1037 235 235 0 0 chr11 59367514 59367565 -62476291 - L1MEc LINE L1 -4360 2040 1990 7 1037 23 0 0 0 chr11 59367628 59367651 -62476205 + AT_rich Low_complexity Low_complexity 1 23 0 7 1037 219 340 11 91 chr11 59367732 59367907 -62475949 - RSINE1 SINE B4 -1 164 4 7 1037 261 289 0 50 chr11 59368771 59368851 -62475005 - MTE2a LTR MaLR -28 351 276 7 1037 359 143 22 0 chr11 59368960 59369051 -62474805 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 7 1037 799 203 176 0 chr11 59369877 59370064 -62473792 + ID_B1 SINE B4 3 222 -2 7 1037 349 37 56 0 chr11 59370065 59370119 -62473737 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 7 1037 1152 172 77 0 chr11 59370265 59370474 -62473382 + URR1B DNA MER1_type 1 225 0 7 1037 568 290 92 29 chr11 59370729 59370906 -62472950 + L1MB3 LINE L1 5832 6018 -165 7 1037 198 0 0 0 chr11 59370906 59370928 -62472928 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1037 568 290 92 29 chr11 59370928 59370988 -62472868 + L1MB3 LINE L1 6019 6084 -99 7 1037 710 212 0 6 chr11 59371005 59371171 -62472685 + CT-rich Low_complexity Low_complexity 1 165 0 7 1037 283 278 0 0 chr11 59371184 59371261 -62472595 - ID4_ SINE ID -53 99 23 7 1037 424 215 120 9 chr11 59371276 59371384 -62472472 - PB1 SINE Alu -2 125 6 7 1037 393 75 0 0 chr11 59371456 59371509 -62472347 + (TTA)n Simple_repeat Simple_repeat 1 53 0 7 1037 628 258 26 7 chr11 59371509 59371661 -62472195 - RSINE1 SINE B4 -9 156 2 7 1037 997 303 53 13 chr11 59372235 59372539 -62471317 + MER2 DNA MER2_type 30 345 0 7 1037 302 211 0 123 chr11 59372546 59372627 -62471229 + 4.5SRNA scRNA scRNA 20 90 -4 7 1037 652 191 9 18 chr11 59372569 59372681 -62471175 + B1_Mur2 SINE Alu 38 148 -1 7 1037 773 267 48 0 chr11 59372696 59372906 -62470950 + ID_B1 SINE B4 5 224 0 7 1037 300 321 67 67 chr11 59373316 59373466 -62470390 - L1MEf LINE L1 -5152 1048 899 7 1037 2221 125 86 26 chr11 59373773 59374159 -62469697 - RLTR9E LTR ERVK 0 409 1 7 1037 726 265 120 38 chr11 59374164 59374431 -62469425 - MLT1C LTR MaLR 0 467 179 7 1037 669 297 5 35 chr11 59374447 59374649 -62469207 - B3A SINE B2 0 198 3 7 1037 338 293 63 174 chr11 59374654 59374844 -62469012 - MLT1C LTR MaLR -216 174 6 7 1037 432 55 0 0 chr11 59375083 59375138 -62468718 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1038 21 36 0 0 chr11 59375661 59375689 -62468167 + AT_rich Low_complexity Low_complexity 1 28 0 7 1038 551 279 6 80 chr11 59375703 59375878 -62467978 - RSINE1 SINE B4 0 165 4 7 1038 734 262 57 9 chr11 59375928 59376140 -62467716 + ID_B1 SINE B4 3 224 0 7 1038 797 244 99 153 chr11 59376401 59376754 -62467102 - MTE2b LTR MaLR -45 334 1 7 1038 300 54 0 0 chr11 59376821 59376858 -62466998 + U2 snRNA snRNA 1 37 -151 7 1038 2755 71 143 139 chr11 59376981 59377491 -62466365 - RLTR1B LTR ERV1 0 512 1 7 1038 258 252 143 64 chr11 59377561 59377701 -62466155 - ORR1E LTR MaLR -165 194 44 7 1038 483 250 36 27 chr11 59377745 59377820 -62466036 + RSINE1 SINE B4 16 89 -76 7 1038 1414 124 31 239 chr11 59377820 59378234 -62465622 - ORR1A4 LTR MaLR 0 329 2 7 1038 483 250 36 27 chr11 59378234 59378269 -62465587 + RSINE1 SINE B4 90 127 -38 7 1038 351 0 0 0 chr11 59378282 59378321 -62465535 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1038 1154 69 0 7 chr11 59379100 59379246 -62464610 - B1_Mus1 SINE Alu -2 146 2 7 1038 326 159 0 14 chr11 59380051 59380121 -62463735 + CT-rich Low_complexity Low_complexity 1 69 0 8 1038 1355 67 16 16 chr11 59380868 59381051 -62462805 - B2_Mm2 SINE B2 -9 186 4 8 1038 321 242 135 10 chr11 59381129 59381225 -62462631 - PB1D10 SINE Alu -3 114 7 8 1038 572 243 29 7 chr11 59381158 59381295 -62462561 - ID_B1 SINE B4 -70 154 15 8 1038 26 0 0 0 chr11 59381309 59381335 -62462521 + AT_rich Low_complexity Low_complexity 1 26 0 8 1038 516 194 0 0 chr11 59381391 59381515 -62462341 + (TG)n Simple_repeat Simple_repeat 2 125 0 8 1038 907 182 34 11 chr11 59381791 59381981 -62461875 + B3 SINE B2 1 192 -1 8 1038 284 341 29 7 chr11 59382045 59382181 -62461675 - MLT1H1 LTR MaLR 0 555 417 8 1038 222 227 61 0 chr11 59382968 59383034 -62460822 + B2_Mm2 SINE B2 93 162 -33 8 1038 261 230 105 26 chr11 59383398 59383474 -62460382 - ID SINE ID -141 83 2 8 1038 293 288 0 36 chr11 59384138 59384221 -62459635 - ID4 SINE ID -1 82 3 8 1038 183 324 51 51 chr11 59385428 59385506 -62458350 + MIRb SINE MIR 93 170 -98 8 1038 540 91 0 0 chr11 59386159 59386247 -62457609 + (GA)n Simple_repeat Simple_repeat 2 89 0 8 1038 198 0 0 0 chr11 59386666 59386688 -62457168 + (TC)n Simple_repeat Simple_repeat 2 23 0 8 1038 252 0 0 0 chr11 59388099 59388127 -62455729 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1038 859 118 13 0 chr11 59388198 59388351 -62455505 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 8 1038 697 190 6 12 chr11 59389716 59389758 -62454098 + polypyrimidine Low_complexity Low_complexity 121 162 0 8 1038 1198 85 11 0 chr11 59389758 59389935 -62453921 + (TCC)n Simple_repeat Simple_repeat 2 180 0 8 1038 697 190 6 12 chr11 59389935 59390052 -62453804 + polypyrimidine Low_complexity Low_complexity 4 120 0 8 1038 182 257 63 63 chr11 59390137 59390216 -62453640 + MIRb SINE MIR 68 146 -122 8 1038 721 251 49 44 chr11 59390526 59390730 -62453126 + B3 SINE B2 4 208 -8 8 1038 228 128 0 0 chr11 59390733 59390745 -62453111 + (TA)n Simple_repeat Simple_repeat 1 12 0 8 1038 393 75 0 0 chr11 59390745 59390798 -62453058 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1038 228 128 0 0 chr11 59390798 59390824 -62453032 + (TA)n Simple_repeat Simple_repeat 1 26 0 8 1038 23 0 0 0 chr11 59390976 59390999 -62452857 + AT_rich Low_complexity Low_complexity 1 23 0 8 1038 396 182 0 0 chr11 59391515 59391603 -62452253 + CT-rich Low_complexity Low_complexity 3 90 0 8 1038 643 309 55 22 chr11 59392263 59392299 -62451557 - L1MEf LINE L1 -2979 3164 3130 8 1038 2198 195 26 146 chr11 59392299 59392881 -62450975 + RLTR18B LTR ERVK 1 512 0 8 1038 643 306 103 33 chr11 59392881 59393816 -62450040 - L1MEf LINE L1 -3014 3129 2092 8 1038 260 184 0 0 chr11 59394112 59394161 -62449695 + B3A SINE B2 1 49 -149 8 1038 240 303 46 60 chr11 59394180 59394331 -62449525 - L1_Mur1 LINE L1 -4020 1866 1718 8 1038 824 201 196 0 chr11 59394346 59394525 -62449331 - B3 SINE B2 0 216 3 8 1038 1738 144 74 61 chr11 59394547 59394910 -62448946 - ORR1C1 LTR MaLR 0 378 11 8 1038 3758 150 22 10 chr11 59394916 59395609 -62448247 - ORR1C1-int LTR MaLR 0 1509 809 8 1038 1188 203 16 20 chr11 59395609 59395855 -62448001 + Lx7 LINE L1 7001 7245 -451 8 1038 1158 178 14 0 chr11 59395958 59396172 -62447684 - URR1A DNA MER1_type -9 217 1 8 1038 575 252 0 17 chr11 59396642 59396759 -62447097 + B1_Mur2 SINE Alu 3 117 -32 8 1038 366 80 0 0 chr11 59396759 59396809 -62447047 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 1038 4590 242 41 19 chr11 59396988 59398122 -62445734 - Lx7 LINE L1 -397 7299 6141 8 1038 433 318 31 0 chr11 59398343 59398472 -62445384 - B1F SINE Alu -2 147 15 8 1038 304 357 7 54 chr11 59398472 59398491 -62445365 - ID_B1 SINE B4 -2 222 82 8 1038 401 0 0 20 chr11 59398491 59398541 -62445315 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1038 618 206 94 8 chr11 59398541 59398668 -62445188 - B1_Mur2 SINE Alu -11 138 1 8 1038 635 167 0 11 chr11 59398679 59398861 -62444995 + GA-rich Low_complexity Low_complexity 1 180 0 8 1038 527 271 25 13 chr11 59398945 59399102 -62444754 - RSINE1 SINE B4 -4 161 3 8 1038 1034 70 16 0 chr11 59399312 59399441 -62444415 + B1_Mus1 SINE Alu 5 135 -13 8 1038 192 77 0 0 chr11 59399538 59399564 -62444292 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 8 1038 689 300 6 6 chr11 59399692 59399775 -62444081 + B4A SINE B4 2 84 -208 8 1038 311 295 28 28 chr11 59399775 59399883 -62443973 + B1F2 SINE Alu 1 108 -41 8 1038 237 271 57 0 chr11 59399990 59400060 -62443796 + MTEb LTR MaLR 1 74 -305 8 1038 2331 281 122 20 chr11 59400104 59400943 -62442913 + MTEa-int LTR MaLR 646 1569 -11 8 1038 1468 59 11 5 chr11 59400943 59401131 -62442725 + B2_Mm2 SINE B2 3 191 -4 8 1038 952 278 91 11 chr11 59401154 59401504 -62442352 + MTEa LTR MaLR 1 378 -1 8 1038 26 0 0 0 chr11 59402066 59402092 -62441764 + AT_rich Low_complexity Low_complexity 1 26 0 8 1038 326 273 10 39 chr11 59402190 59402293 -62441563 - RMER15 LTR ERVL -105 470 371 8 1038 362 312 78 41 chr11 59404206 59404730 -62439126 - L1MB2 LINE L1 -34 6149 5601 8 1038 794 216 193 0 chr11 59405340 59405521 -62438335 + B3 SINE B2 1 216 0 8 1038 180 152 0 0 chr11 59405636 59405669 -62438187 + A-rich Low_complexity Low_complexity 2 34 0 8 1038 1471 223 40 3 chr11 59407253 59407582 -62436274 + MTD LTR MaLR 14 354 -65 8 1038 582 195 133 0 chr11 59407583 59407711 -62436145 + B1_Mur4 SINE Alu 1 145 -5 8 1038 21 36 0 0 chr11 59407732 59407760 -62436096 + AT_rich Low_complexity Low_complexity 1 28 0 8 1038 1878 190 45 5 chr11 59407917 59408293 -62435563 - Lx9 LINE L1 -205 7439 7049 8 1038 355 179 184 16 chr11 59408304 59408429 -62435427 - B2_Mm2 SINE B2 -3 192 47 8 1038 1563 244 30 41 chr11 59408474 59408840 -62435016 - RMER1A Other Other -582 448 45 8 1038 1447 244 84 60 chr11 59408875 59409391 -62434465 - RMER1B Other Other -530 536 45 8 1038 444 266 36 36 chr11 59409850 59410018 -62433838 - L1MA4 LINE L1 -166 6134 5967 8 1038 680 290 132 10 chr11 59410042 59410352 -62433504 - L1MA4 LINE L1 -435 5865 5518 8 1038 357 282 82 0 chr11 59410779 59410864 -62432992 - PB1D10 SINE Alu -24 93 2 8 1038 1283 48 0 6 chr11 59411097 59411266 -62432590 - B2_Mm2 SINE B2 -26 169 2 8 1038 404 258 75 66 chr11 59411391 59411619 -62432237 - L1MA5 LINE L1 -410 5890 5661 8 1038 5105 143 90 4 chr11 59411875 59412705 -62431151 - RMER19B LTR ERVK 0 902 1 8 1038 405 0 0 0 chr11 59413680 59413725 -62430131 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1038 217 255 0 19 chr11 59413737 59413789 -62430067 - B3A SINE B2 -142 56 6 8 1038 3869 89 30 40 chr11 59413842 59414415 -62429441 - RMER2 LTR ERV1 0 567 1 8 1038 304 294 69 58 chr11 59414883 59415071 -62428785 - MLT1B LTR MaLR 0 390 201 8 1038 477 0 0 0 chr11 59416171 59416224 -62427632 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1038 501 128 0 14 chr11 59416895 59416993 -62426863 + MTC LTR MaLR 1 92 -327 8 1038 297 0 0 0 chr11 59417624 59417657 -62426199 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 8 1038 889 157 0 0 chr11 59417657 59417791 -62426065 - B1_Mus1 SINE Alu -14 134 1 8 1038 2754 126 17 13 chr11 59417817 59418276 -62425580 - RMER4A LTR ERVK 0 466 6 8 1038 27 0 0 0 chr11 59418447 59418474 -62425382 + AT_rich Low_complexity Low_complexity 1 27 0 8 1038 1195 103 5 38 chr11 59418928 59419139 -62424717 - Lx LINE L1 -3 6651 6448 8 1038 974 242 5 28 chr11 59419278 59419495 -62424361 - B3 SINE B2 0 216 5 8 1038 340 158 0 0 chr11 59419534 59419591 -62424265 + B1_Mus1 SINE Alu 2 58 -90 8 1038 285 182 36 0 chr11 59419544 59419599 -62424257 + ID_B1 SINE B4 92 148 -76 8 1038 25 31 0 0 chr11 59420276 59420308 -62423548 + AT_rich Low_complexity Low_complexity 1 32 0 8 1038 906 149 0 0 chr11 59420460 59420601 -62423255 + B1_Mur4 SINE Alu 1 141 -9 8 1038 201 74 0 0 chr11 59420601 59420628 -62423228 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1038 2842 19 3 0 chr11 59420759 59421083 -62422773 - L1Md_F2 LINE L1 -3 6579 6255 8 1038 360 262 0 0 chr11 59421263 59421347 -62422509 + PB1D7 SINE Alu 1 84 -36 8 1038 29 70 0 0 chr11 59421375 59421432 -62422424 + AT_rich Low_complexity Low_complexity 1 57 0 8 1038 351 179 0 0 chr11 59421435 59421502 -62422354 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1038 852 62 141 0 chr11 59421531 59421659 -62422197 + B1_Mus2 SINE Alu 2 147 0 8 1038 189 0 0 0 chr11 59421659 59421680 -62422176 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1038 768 188 7 0 chr11 59422016 59422170 -62421686 - L1_Mur3 LINE L1 -2927 2953 2799 8 1038 336 244 67 0 chr11 59422660 59422750 -62421106 + Lx8 LINE L1 6439 6534 -939 8 1038 324 0 0 0 chr11 59423274 59423310 -62420546 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 8 1038 1236 35 0 14 chr11 59423310 59423447 -62420409 - B1_Mus1 SINE Alu -10 138 2 8 1038 616 90 0 29 chr11 59423675 59423778 -62420078 + (GAGAA)n Simple_repeat Simple_repeat 4 103 0 8 1038 277 295 48 32 chr11 59424492 59424618 -62419238 + MLT1A1 LTR MaLR 1 128 -280 8 1038 294 304 22 0 chr11 59427928 59428020 -62415836 + Charlie9 DNA MER1_type 8 101 -2656 8 1038 3538 23 2 0 chr11 59428776 59429171 -62414685 - MTA_Mm LTR MaLR 0 396 1 8 1038 8302 61 26 6 chr11 59429171 59430247 -62413609 - MTA_Mm-int LTR MaLR 0 1098 1 8 1038 3358 29 26 0 chr11 59430247 59430633 -62413223 - MTA_Mm LTR MaLR 0 396 1 8 1038 421 327 146 18 chr11 59430781 59431061 -62412795 + MLT2D LTR ERVL 1 316 -98 8 1038 333 0 0 0 chr11 59432311 59432348 -62411508 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1038 2046 174 181 41 chr11 59432362 59432669 -62411187 + Lx4A LINE L1 665 1033 -6053 8 1038 267 79 0 0 chr11 59432669 59432707 -62411149 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1038 15394 94 31 38 chr11 59432707 59435284 -62408572 + Lx4A LINE L1 1034 3660 -2217 8 1038 7606 110 16 19 chr11 59435283 59436644 -62407212 + Lx4A LINE L1 4767 6140 -918 8 1038 1067 89 14 0 chr11 59436644 59436790 -62407066 + B1_Mus1 SINE Alu 1 148 0 9 1038 6244 109 17 47 chr11 59436790 59437206 -62406650 + Lx4A LINE L1 6141 6537 -521 8 1038 864 64 64 0 chr11 59437204 59437344 -62406512 + Lx4A LINE L1 5995 6143 -915 9 1038 2906 138 17 23 chr11 59437350 59437833 -62406023 + Lx4A LINE L1 6541 7020 -38 8 1038 777 172 199 12 chr11 59437854 59438025 -62405831 - B3 SINE B2 -10 206 4 9 1038 1018 73 81 0 chr11 59438232 59438368 -62405488 + B1_Mus2 SINE Alu 1 147 0 9 1038 290 340 30 46 chr11 59438405 59438667 -62405189 + RLTR14-int LTR ERV1 3395 3652 -1665 9 1038 216 0 0 0 chr11 59439068 59439092 -62404764 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1038 913 103 29 0 chr11 59439103 59439239 -62404617 - B1_Mur4 SINE Alu 0 150 11 9 1038 29 0 0 0 chr11 59439337 59439366 -62404490 + AT_rich Low_complexity Low_complexity 1 29 0 9 1038 744 145 30 0 chr11 59439412 59439543 -62404313 + B1_Mur2 SINE Alu 14 148 -1 9 1038 470 239 83 42 chr11 59441953 59442297 -62401559 - Lx7 LINE L1 -19 7677 7200 9 1038 1014 259 36 0 chr11 59442286 59442537 -62401319 + Lx7 LINE L1 6935 7194 -502 9 1038 455 246 79 95 chr11 59442565 59442754 -62401102 + B3A SINE B2 1 186 -12 9 1038 240 311 48 102 chr11 59443810 59443996 -62399860 + Arthur1B DNA Tip100 310 485 -740 9 1038 245 174 342 42 chr11 59443990 59444023 -62399833 - MT2A LTR ERVL -7 486 457 9 1038 180 0 0 0 chr11 59444023 59444043 -62399813 + (TA)n Simple_repeat Simple_repeat 2 21 0 9 1038 1245 189 122 22 chr11 59444043 59444398 -62399458 - MT2A LTR ERVL -92 509 17 9 1038 253 286 148 21 chr11 59445629 59445855 -62398001 - L1MC LINE L1 -2371 5511 5256 9 1038 959 92 21 7 chr11 59445861 59446004 -62397852 + B1_Mus1 SINE Alu 4 148 0 9 1038 276 265 0 0 chr11 59446007 59446105 -62397751 + GA-rich Low_complexity Low_complexity 2 99 0 9 1038 1501 204 15 79 chr11 59446638 59447031 -62396825 + ORR1D2 LTR MaLR 1 368 -2 9 1038 378 204 0 0 chr11 59447110 59447203 -62396653 + (CA)n Simple_repeat Simple_repeat 2 94 0 9 1038 275 235 17 150 chr11 59448062 59448092 -62395764 + ID_B1 SINE B4 121 223 0 9 1038 373 230 79 22 chr11 59448092 59448181 -62395675 + B1F SINE Alu 56 149 0 9 1038 337 365 34 7 chr11 59448182 59448331 -62395525 + B4 SINE B4 1 153 -139 9 1038 236 279 29 0 chr11 59448383 59448451 -62395405 + ID_B1 SINE B4 155 224 0 9 1038 419 289 88 7 chr11 59448503 59448639 -62395217 + MER2 DNA MER2_type 90 236 -109 9 1038 307 332 27 91 chr11 59449152 59449357 -62394499 + MER102b DNA MER1_type 5 196 -145 9 1038 307 223 61 26 chr11 59451072 59451187 -62392669 - PB1D7 SINE Alu -1 119 1 9 1038 774 187 15 22 chr11 59451240 59451377 -62392479 + B1_Mur4 SINE Alu 2 137 -13 9 1038 390 74 0 0 chr11 59451386 59451440 -62392416 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1038 243 308 50 8 chr11 59451511 59451632 -62392224 + L1MB8 LINE L1 5849 5974 -204 9 1038 898 213 21 21 chr11 59452162 59452354 -62391502 + B3A SINE B2 7 198 0 9 1038 195 259 56 0 chr11 59453647 59453701 -62390155 + MIRm SINE MIR 209 265 -11 9 1038 203 316 0 17 chr11 59453727 59453785 -62390071 - MIRb SINE MIR -2 266 210 9 1038 1158 76 7 0 chr11 59454686 59454831 -62389025 + B1_Mus1 SINE Alu 2 147 -1 9 1038 610 197 8 69 chr11 59455165 59455296 -62388560 - B1F2 SINE Alu -25 124 2 9 1038 180 362 44 69 chr11 59455482 59455642 -62388214 - MIRc SINE MIR -70 198 43 9 1038 307 206 100 29 chr11 59457012 59457082 -62386774 - ID4_ SINE ID 0 83 9 9 1038 405 102 0 0 chr11 59457093 59457152 -62386704 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1038 396 0 0 0 chr11 59457704 59457748 -62386108 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1038 2023 130 28 28 chr11 59457797 59458121 -62385735 - ORR1A3 LTR MaLR 0 326 3 9 1038 658 129 0 24 chr11 59458123 59458250 -62385606 + Lx4A LINE L1 6933 7056 -2 9 1038 290 240 81 16 chr11 59459019 59459142 -62384714 - L1MD3 LINE L1 -338 7657 7527 9 1038 294 29 0 0 chr11 59459472 59459507 -62384349 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1038 345 236 111 58 chr11 59459705 59459912 -62383944 + L1MC5 LINE L1 7627 7844 -117 9 1038 180 200 0 0 chr11 59460207 59460247 -62383609 + CT-rich Low_complexity Low_complexity 3 42 0 9 1038 1304 115 10 15 chr11 59460248 59460443 -62383413 - B2_Mm2 SINE B2 0 195 2 9 1038 1271 181 0 36 chr11 59460465 59460689 -62383167 - B3 SINE B2 0 216 1 9 1038 954 164 118 21 chr11 59460703 59460890 -62382966 - B3 SINE B2 -10 206 2 9 1038 329 299 0 0 chr11 59460898 59460965 -62382891 - PB1 SINE Alu -7 120 54 9 1038 372 22 0 0 chr11 59461510 59461555 -62382301 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1038 200 217 0 0 chr11 59462296 59462342 -62381514 + A-rich Low_complexity Low_complexity 1 46 0 9 1038 192 77 0 0 chr11 59462787 59462813 -62381043 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1038 2037 141 112 8 chr11 59464163 59464520 -62379336 - ORR1B1 LTR MaLR 0 394 1 9 1038 319 343 35 0 chr11 59464584 59464727 -62379129 - B1F1 SINE Alu 0 149 2 9 1038 1275 34 0 0 chr11 59464796 59464944 -62378912 - B1_Mus1 SINE Alu 0 148 1 9 1038 254 301 59 65 chr11 59465062 59465215 -62378641 + RSINE1 SINE B4 2 153 -12 9 1038 441 241 140 60 chr11 59465261 59465411 -62378445 + RSINE1 SINE B4 4 165 0 9 1038 337 245 141 10 chr11 59465450 59465549 -62378307 + PB1D7 SINE Alu 1 112 -8 9 1038 852 272 9 5 chr11 59465563 59465777 -62378079 + ID_B1 SINE B4 4 218 -6 9 1038 529 317 28 0 chr11 59465794 59465939 -62377917 + ID_B1 SINE B4 76 224 0 9 1038 835 196 22 0 chr11 59466042 59466180 -62377676 + B3 SINE B2 1 141 -75 9 1038 207 0 0 0 chr11 59466215 59466238 -62377618 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1038 1178 75 0 0 chr11 59466251 59466398 -62377458 + B1_Mus1 SINE Alu 2 148 0 9 1038 3925 221 67 47 chr11 59466475 59466559 -62377297 + Lx9 LINE L1 6597 6681 -963 9 1038 1798 157 65 34 chr11 59466559 59466941 -62376915 + ORR1B1 LTR MaLR 1 394 0 9 1038 3925 221 67 47 chr11 59466941 59467878 -62375978 + Lx9 LINE L1 6682 7638 -6 9 1038 247 283 0 0 chr11 59468275 59468335 -62375521 + MIR SINE MIR 85 144 -118 9 1038 338 367 61 0 chr11 59468445 59468592 -62375264 + MER58B DNA MER1_type 171 326 -15 9 1038 188 294 22 45 chr11 59468642 59468731 -62375125 - MIR SINE MIR -1 261 175 9 1038 237 207 0 17 chr11 59468753 59468812 -62375044 - ID_B1 SINE B4 0 224 167 9 1038 285 307 0 0 chr11 59469204 59469279 -62374577 - ID_B1 SINE B4 -62 162 88 9 1038 2410 196 50 61 chr11 59469733 59470287 -62373569 + RMER15 LTR ERVL 28 575 0 9 1038 262 357 131 57 chr11 59470657 59470901 -62372955 + B4 SINE B4 20 281 -11 9 1038 487 266 14 86 chr11 59471117 59471257 -62372599 + MTEa LTR MaLR 1 130 -249 9 1038 474 254 53 189 chr11 59471806 59472087 -62371769 + MTEa LTR MaLR 116 358 -21 9 1038 360 0 0 0 chr11 59472350 59472390 -62371466 + (CTTG)n Simple_repeat Simple_repeat 1 40 0 9 1038 503 175 172 16 chr11 59472454 59472576 -62371280 - B1_Mur3 SINE Alu -7 142 2 9 1038 546 234 28 0 chr11 59472590 59472697 -62371159 - B1F1 SINE Alu -5 144 35 9 1038 240 200 0 0 chr11 59472723 59472763 -62371093 - ID4 SINE ID -38 45 6 9 1038 181 204 82 0 chr11 59472931 59472980 -62370876 - L2a LINE L2 -25 3401 3349 9 1038 470 245 0 138 chr11 59474001 59474190 -62369666 - RSINE1 SINE B4 0 165 3 9 1038 190 335 178 13 chr11 59474473 59474630 -62369226 - MIRb SINE MIR -37 231 49 9 1038 284 293 27 0 chr11 59474993 59475068 -62368788 - PB1D10 SINE Alu -17 100 24 9 1038 240 325 55 61 chr11 59475263 59475413 -62368443 + MIRb SINE MIR 36 178 -90 9 1038 295 297 142 18 chr11 59475487 59475600 -62368256 + MIR SINE MIR 100 226 -36 9 1038 180 77 0 0 chr11 59475961 59475987 -62367869 + (CCCCG)n Simple_repeat Simple_repeat 5 30 0 9 1038 225 149 53 26 chr11 59476129 59476205 -62367651 + (CGCGG)n Simple_repeat Simple_repeat 2 79 0 9 1038 190 278 89 1 chr11 59477857 59477938 -62365918 + MIR SINE MIR 72 158 -110 9 1038 236 279 47 0 chr11 59478592 59478678 -62365178 - MIR3 SINE MIR -10 198 109 9 1038 215 296 54 40 chr11 59478851 59478925 -62364931 - MIR3 SINE MIR -38 170 96 9 1038 281 219 221 47 chr11 59479252 59479338 -62364518 - RSINE1 SINE B4 -62 103 3 9 1038 256 269 38 13 chr11 59479477 59479556 -62364300 - L1M5 LINE L1 -333 5791 5711 9 1038 311 296 94 47 chr11 59479562 59479711 -62364145 + RSINE1 SINE B4 5 160 -5 9 1038 22 0 0 0 chr11 59479745 59479767 -62364089 + AT_rich Low_complexity Low_complexity 1 22 0 9 1038 25 0 0 0 chr11 59479783 59479808 -62364048 + AT_rich Low_complexity Low_complexity 1 25 0 9 1038 582 212 121 81 chr11 59479823 59479858 -62363998 - B3A SINE B2 -16 182 152 9 1038 216 0 0 0 chr11 59479858 59479882 -62363974 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 9 1038 582 212 121 81 chr11 59479882 59480020 -62363836 - B3A SINE B2 -47 151 2 9 1038 389 254 26 26 chr11 59480313 59480426 -62363430 - ID_B1 SINE B4 -18 206 94 9 1038 526 324 77 19 chr11 59480557 59480765 -62363091 - MER58A DNA MER1_type -3 221 2 9 1038 522 190 244 23 chr11 59481217 59481389 -62362467 - B3 SINE B2 -6 210 1 9 1038 867 246 104 63 chr11 59482021 59482368 -62361488 + L1MB5 LINE L1 5372 5732 -448 9 1038 286 213 33 0 chr11 59482587 59482648 -62361208 + L1MB5 LINE L1 5929 5991 -183 9 1038 268 217 59 24 chr11 59482708 59482793 -62361063 - MER58D DNA MER1_type -15 371 284 9 1038 324 295 38 104 chr11 59482814 59482920 -62360936 + B1F1 SINE Alu 1 99 -50 9 1038 393 273 68 27 chr11 59482986 59483133 -62360723 - RSINE1 SINE B4 -9 156 4 1 1038 210 171 0 0 chr11 59484024 59484065 -62359791 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 1 1038 957 116 0 7 chr11 59484078 59484217 -62359639 - B1_Mur4 SINE Alu -1 149 12 1 1038 389 244 38 92 chr11 59484104 59484235 -62359621 - MT2B LTR ERVL -323 278 155 1 1038 22 0 0 0 chr11 59484259 59484281 -62359575 + AT_rich Low_complexity Low_complexity 1 22 0 1 1038 184 194 0 0 chr11 59485047 59485078 -62358778 - MIRc SINE MIR -209 59 29 1 1038 376 287 65 0 chr11 59486285 59486393 -62357463 - PB1D10 SINE Alu 0 117 3 1 1038 2576 117 45 8 chr11 59486499 59486895 -62356961 + MTC LTR MaLR 3 413 -8 1 1038 198 0 0 0 chr11 59487764 59487786 -62356070 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1038 216 86 0 0 chr11 59487858 59487893 -62355963 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1038 1190 55 0 0 chr11 59487893 59488039 -62355817 - B1_Mus1 SINE Alu -2 146 1 1 1038 1279 27 0 0 chr11 59488288 59488434 -62355422 - B1_Mus2 SINE Alu 0 147 2 1 1038 231 221 89 25 chr11 59488488 59488567 -62355289 - MLT1E1 LTR MaLR -241 413 330 1 1038 1010 278 102 20 chr11 59488763 59489264 -62354592 - L1MB5 LINE L1 -9 6165 5622 1 1038 234 0 0 0 chr11 59489482 59489508 -62354348 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1038 228 219 0 0 chr11 59489713 59489754 -62354102 + PB1D9 SINE Alu 75 115 -5 1 1038 559 234 58 17 chr11 59490294 59490468 -62353388 - B3A SINE B2 -2 196 16 1 1038 226 306 14 27 chr11 59490409 59490483 -62353373 - ID4_ SINE ID -9 74 2 1 1038 1097 257 90 6 chr11 59490588 59490921 -62352935 + L1MB8 LINE L1 5818 6178 0 1 1038 327 371 56 12 chr11 59491035 59491286 -62352570 + Tigger5 DNA MER2_type 2145 2406 0 1 1038 462 270 0 17 chr11 59491563 59491680 -62352176 + PB1D7 SINE Alu 2 116 -4 1 1038 616 301 68 0 chr11 59491693 59491869 -62351987 + B3 SINE B2 6 193 -23 1 1038 447 152 410 0 chr11 59491887 59491992 -62351864 - B1_Mur3 SINE Alu 0 149 2 1 1038 211 351 68 6 chr11 59492784 59492943 -62350913 + MIRc SINE MIR 12 185 -77 1 1038 238 235 159 34 chr11 59493032 59493120 -62350736 + RMER20B LTR ERVK 506 604 -23 1 1038 357 241 0 48 chr11 59494533 59494616 -62349240 + ID_B1 SINE B4 134 212 -12 1 1038 219 139 0 0 chr11 59494627 59494663 -62349193 + (GGA)n Simple_repeat Simple_repeat 1 36 0 1 1038 657 167 28 106 chr11 59494694 59494835 -62349021 + RSINE1 SINE B4 2 131 -34 1 1038 210 334 72 5 chr11 59494895 59495002 -62348854 - MIRc SINE MIR -131 145 37 1 1038 655 226 7 27 chr11 59495116 59495256 -62348600 + B1_Mur1 SINE Alu 1 139 -10 1 1038 180 0 0 0 chr11 59495256 59495276 -62348580 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1038 330 291 70 159 chr11 59495517 59495832 -62348024 - ORR1E LTR MaLR 0 359 73 1 1038 547 188 157 45 chr11 59496785 59496919 -62346937 - B1_Mur4 SINE Alu 0 150 2 1 1038 731 201 14 7 chr11 59497705 59497850 -62346006 - B1_Mur2 SINE Alu -2 147 2 1 1038 225 237 79 0 chr11 59497864 59497940 -62345916 - L1MD2 LINE L1 -11 6348 6267 1 1038 2874 76 47 0 chr11 59498038 59498420 -62345436 - MTB LTR MaLR 0 400 1 1 1038 2218 168 92 32 chr11 59498902 59499338 -62344518 + Lx9 LINE L1 6300 6761 -883 1 1038 824 307 82 10 chr11 59499351 59499765 -62344091 + L1_Mur3 LINE L1 3766 4209 -1671 1 1038 1152 90 121 0 chr11 59499771 59499937 -62343919 + B2_Mm1t SINE B2 4 189 -4 1 1038 400 267 19 0 chr11 59500192 59500297 -62343559 + PB1D7 SINE Alu 1 107 -13 1 1038 405 0 0 0 chr11 59500734 59500779 -62343077 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1038 535 192 29 9 chr11 59501255 59501360 -62342496 - Lx9 LINE L1 -916 6728 6622 3 1038 214 131 21 21 chr11 59501384 59501431 -62342425 + T-rich Low_complexity Low_complexity 6 52 0 4 1038 13129 209 76 83 chr11 59501432 59502496 -62341360 - Lx9 LINE L1 -1248 6396 5259 3 1038 1214 41 0 20 chr11 59502496 59502646 -62341210 - B1_Mus1 SINE Alu 0 148 2 5 1038 13129 174 59 128 chr11 59502646 59503329 -62340527 - Lx9 LINE L1 -589 5258 4579 3 1038 1263 41 58 23 chr11 59503329 59503503 -62340353 - B2_Mm2 SINE B2 -8 187 8 6 1038 13129 174 59 128 chr11 59503503 59504075 -62339781 - Lx9 LINE L1 -589 4578 4007 3 1038 1227 128 23 158 chr11 59504075 59504147 -62339709 - URR1B DNA MER1_type 0 225 158 7 1038 290 26 0 25 chr11 59504147 59504187 -62339669 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 1038 1227 128 23 158 chr11 59504187 59504374 -62339482 - URR1B DNA MER1_type -68 157 1 7 1038 13129 174 59 128 chr11 59504374 59504641 -62339215 - Lx9 LINE L1 -1841 4006 3715 3 1038 189 0 0 0 chr11 59504641 59504662 -62339194 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1038 13129 174 59 128 chr11 59504662 59505282 -62338574 - Lx9 LINE L1 -2133 3714 3033 3 1038 815 145 72 0 chr11 59505282 59505420 -62338436 - B1_Mur4 SINE Alu 0 150 3 1 1038 13129 174 59 128 chr11 59505420 59505783 -62338073 - Lx9 LINE L1 -2815 3032 2672 3 1038 1183 118 6 0 chr11 59505783 59505952 -62337904 + B2_Mm1a SINE B2 1 170 -23 1 1038 13129 174 59 128 chr11 59505952 59506391 -62337465 - Lx9 LINE L1 -2815 2671 2233 3 129 2983 178 56 45 chr11 59506388 59507031 -62336825 - Lx9 LINE L1 -6412 1196 547 3 1039 382 326 43 85 chr11 59507149 59507337 -62336519 - Lx9 LINE L1 -6915 693 514 3 1039 393 188 111 12 chr11 59507363 59507444 -62336412 + B1_Mus2 SINE Alu 57 145 -2 1 1039 537 310 80 35 chr11 59508512 59508910 -62334946 - L1MB7 LINE L1 -175 6009 5594 1 1039 630 233 15 18 chr11 59508925 59509080 -62334776 - PB1D7 SINE Alu -3 146 1 1 1039 283 277 46 105 chr11 59508982 59508998 -62334858 - MT2B2 LTR ERVL -333 251 217 1 1039 323 297 11 11 chr11 59508998 59509090 -62334766 - B4A SINE B4 -125 167 76 1 1039 283 277 46 105 chr11 59509090 59509135 -62334721 - MT2B2 LTR ERVL -333 216 108 1 1039 1240 48 0 0 chr11 59510651 59510797 -62333059 + B1_Mus2 SINE Alu 2 147 0 1 1039 1743 232 49 16 chr11 59512084 59512470 -62331386 - MTD LTR MaLR 0 419 21 1 1039 284 64 21 0 chr11 59514780 59514827 -62329029 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1039 1747 130 180 38 chr11 59515144 59515488 -62328368 - ORR1B1 LTR MaLR 0 394 2 2 1039 333 272 103 34 chr11 59515583 59515709 -62328147 + B4A SINE B4 2 135 -89 2 1039 467 279 110 93 chr11 59516710 59516892 -62326964 - B3A SINE B2 -11 187 3 2 1039 244 264 19 0 chr11 59517467 59517520 -62326336 - B1F2 SINE Alu -95 54 1 2 1039 391 161 0 31 chr11 59518420 59518484 -62325372 + PB1D9 SINE Alu 58 119 -1 2 1039 185 266 121 30 chr11 59519598 59519664 -62324192 - L2c LINE L2 -48 3339 3268 2 1039 312 83 0 0 chr11 59520074 59520122 -62323734 + (TTGG)n Simple_repeat Simple_repeat 2 49 0 2 1039 1329 266 122 32 chr11 59520134 59520534 -62323322 + Lx6 LINE L1 6999 7434 -26 2 1039 435 81 0 0 chr11 59522206 59522239 -62321617 + (TTC)n Simple_repeat Simple_repeat 2 34 0 2 1039 1194 107 0 0 chr11 59522239 59522416 -62321440 + (TCC)n Simple_repeat Simple_repeat 2 178 0 2 1039 435 81 0 0 chr11 59522416 59522444 -62321412 + (TTC)n Simple_repeat Simple_repeat 1 28 0 3 1039 1304 20 0 0 chr11 59523672 59523819 -62320037 + B1_Mus2 SINE Alu 1 147 0 3 1039 234 195 178 33 chr11 59524764 59524854 -62319002 + Charlie24 DNA MER1_type 2127 2229 -221 3 1039 1390 79 15 35 chr11 59525263 59525461 -62318395 + B2_Mm2 SINE B2 1 194 -1 3 1039 1038 150 37 11 chr11 59525700 59525889 -62317967 + B2_Mm2 SINE B2 1 194 -1 3 1039 231 167 0 0 chr11 59525969 59526011 -62317845 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1039 324 243 107 102 chr11 59526224 59526421 -62317435 - L1MB8 LINE L1 0 6178 5981 3 1039 540 267 27 9 chr11 59526423 59526563 -62317293 - B1_Mur1 SINE Alu 0 149 1 3 1039 1011 308 39 17 chr11 59526571 59526977 -62316879 - L1MB8 LINE L1 -356 5818 5404 3 1039 213 295 152 23 chr11 59527042 59527174 -62316682 - MIRb SINE MIR -5 257 109 3 1039 21 36 0 0 chr11 59528107 59528135 -62315721 + AT_rich Low_complexity Low_complexity 1 28 0 3 1039 189 0 0 0 chr11 59528192 59528213 -62315643 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1039 210 261 43 0 chr11 59528218 59528264 -62315592 - ID2 SINE ID -2 81 34 4 1039 261 286 107 0 chr11 59528301 59528385 -62315471 - PB1D10 SINE Alu -10 107 15 4 1039 261 83 0 0 chr11 59528809 59528845 -62315011 + (TGG)n Simple_repeat Simple_repeat 2 37 0 4 1039 266 265 35 35 chr11 59529595 59529681 -62314175 + MTEb LTR MaLR 291 376 -3 4 1039 922 227 173 20 chr11 59530170 59530574 -62313282 + L1MC3 LINE L1 6647 7112 -673 4 1039 868 217 72 6 chr11 59530684 59530928 -62312928 + L1MC3 LINE L1 7326 7729 -266 4 1039 2101 102 39 13 chr11 59531992 59532301 -62311555 - ORR1A4 LTR MaLR 0 329 13 4 1039 520 277 238 0 chr11 59533026 59533329 -62310527 - L1MB3 LINE L1 -42 6138 5768 4 1039 759 60 0 17 chr11 59533329 59533447 -62310409 - L1Md_F2 LINE L1 -2 6580 6465 4 1039 229 270 62 16 chr11 59533599 59533663 -62310193 - ID_B1 SINE B4 -128 96 30 4 1039 577 251 149 54 chr11 59533692 59534044 -62309812 - L1MB3 LINE L1 -585 5593 5182 4 1039 225 0 0 0 chr11 59534125 59534150 -62309706 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1039 697 270 0 13 chr11 59534673 59534823 -62309033 + RSINE1 SINE B4 12 159 -6 5 1039 226 152 0 0 chr11 59534991 59535024 -62308832 + B3 SINE B2 6 38 -178 5 1039 809 133 81 7 chr11 59535029 59535165 -62308691 + B1_Mus1 SINE Alu 3 148 0 5 1039 343 220 159 90 chr11 59535037 59535182 -62308674 + B4A SINE B4 94 248 -44 5 1039 507 225 35 59 chr11 59535194 59535364 -62308492 + Lx6 LINE L1 7289 7454 -6 5 1039 533 274 29 43 chr11 59535398 59535589 -62308267 + B3 SINE B2 7 194 -1 5 1039 214 323 97 0 chr11 59535895 59535957 -62307899 + ID_B1 SINE B4 84 151 -73 5 1039 563 0 15 0 chr11 59536277 59536344 -62307512 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1039 622 304 94 11 chr11 59536798 59537084 -62306772 - Lx9 LINE L1 -169 5678 5369 5 1039 360 275 16 50 chr11 59537083 59537333 -62306523 + Lx9 LINE L1 5711 5988 -1656 5 1039 576 281 6 32 chr11 59537510 59537661 -62306195 + RSINE1 SINE B4 10 156 -9 6 1039 189 0 0 0 chr11 59537661 59537682 -62306174 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1039 527 289 106 28 chr11 59537819 59538036 -62305820 + B4 SINE B4 1 234 -58 6 1039 198 0 0 0 chr11 59538094 59538116 -62305740 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1039 597 269 35 43 chr11 59538158 59538399 -62305457 + L1_Mur2 LINE L1 5560 5772 -396 6 1039 438 233 43 8 chr11 59538568 59538685 -62305171 + L1MB7 LINE L1 6057 6177 -7 6 1039 316 209 39 102 chr11 59538935 59539063 -62304793 - PB1D9 SINE Alu 0 120 1 6 1039 198 91 0 0 chr11 59540698 59540731 -62303125 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1039 725 83 0 130 chr11 59542474 59542612 -62301244 - B1_Mus1 SINE Alu 0 148 29 6 1039 185 310 35 35 chr11 59542737 59542824 -62301032 + L4 LINE RTE 1059 1145 -884 6 1039 181 241 85 37 chr11 59542961 59543043 -62300813 + L2 LINE L2 1431 1516 -1903 7 1039 181 208 47 105 chr11 59543016 59543102 -62300754 - L3b LINE CR1 -262 220 140 7 1039 463 186 38 76 chr11 59543157 59543262 -62300594 + PB1D10 SINE Alu 1 101 -16 7 1039 234 206 0 0 chr11 59545522 59545585 -62298271 + CT-rich Low_complexity Low_complexity 2 64 0 7 1039 464 113 347 53 chr11 59547093 59547243 -62296613 - B2_Mm2 SINE B2 0 195 2 7 1039 1311 80 11 0 chr11 59547243 59547418 -62296438 - B2_Mm1t SINE B2 -14 179 3 7 1039 292 234 156 21 chr11 59548218 59548314 -62295542 - MLT1A LTR MaLR -38 336 219 7 1039 631 112 0 36 chr11 59548367 59548506 -62295350 + (TCC)n Simple_repeat Simple_repeat 3 136 0 7 1039 236 100 0 24 chr11 59548508 59548549 -62295307 + (TTA)n Simple_repeat Simple_repeat 1 40 0 7 1039 1327 68 40 0 chr11 59548549 59548725 -62295131 - B2_Mm1a SINE B2 -9 184 2 7 1039 288 307 11 0 chr11 59548726 59548814 -62295042 - MLT1A LTR MaLR -244 121 33 7 1039 186 189 0 0 chr11 59549361 59549398 -62294458 + (CAG)n Simple_repeat Simple_repeat 2 38 0 8 1039 189 0 0 0 chr11 59555136 59555157 -62288699 + (TCC)n Simple_repeat Simple_repeat 1 21 0 8 1039 947 213 71 5 chr11 59558571 59558769 -62285087 + B3 SINE B2 2 212 -4 8 1039 244 254 0 56 chr11 59558959 59559030 -62284826 - RSINE1 SINE B4 -18 147 81 8 1039 275 259 210 0 chr11 59559396 59559477 -62284379 - RSINE1 SINE B4 -49 116 19 8 1039 295 291 73 55 chr11 59559524 59559633 -62284223 + Charlie1 DNA MER1_type 1441 1551 -1230 8 1039 314 351 22 30 chr11 59559784 59559919 -62283937 - RSINE1 SINE B4 -4 161 28 8 1039 1036 276 184 102 chr11 59559931 59560217 -62283639 + Charlie1 DNA MER1_type 1663 1954 -827 8 1039 554 249 177 0 chr11 59560217 59560398 -62283458 + B3 SINE B2 2 214 -2 8 1039 1036 276 184 102 chr11 59560398 59560418 -62283438 + Charlie1 DNA MER1_type 1955 1963 -818 8 1039 366 313 25 25 chr11 59560418 59560536 -62283320 + PB1 SINE Alu 3 120 -7 8 1039 1036 276 184 102 chr11 59560536 59560766 -62283090 + Charlie1 DNA MER1_type 1964 2214 -567 8 1039 1284 27 0 0 chr11 59560766 59560913 -62282943 - B1_Mm SINE Alu 0 147 1 8 1039 1036 276 184 102 chr11 59560913 59561250 -62282606 + Charlie1 DNA MER1_type 2215 2606 -175 8 1039 252 381 52 0 chr11 59561250 59561347 -62282509 - PB1D7 SINE Alu -18 102 1 9 1039 1036 276 184 102 chr11 59561347 59561450 -62282406 + Charlie1 DNA MER1_type 2607 2721 -60 8 1039 1411 216 172 30 chr11 59561451 59561818 -62282038 - MTD LTR MaLR 0 419 1 9 1039 739 196 181 23 chr11 59564057 59564234 -62279622 + B3 SINE B2 9 213 -3 9 1039 253 221 77 13 chr11 59564870 59564948 -62278908 - B1F SINE Alu -47 102 20 9 1039 302 250 24 36 chr11 59566947 59567030 -62276826 + ID4_ SINE ID 2 83 0 9 1039 995 117 14 7 chr11 59567524 59567670 -62276186 - B1_Mur4 SINE Alu -1 149 3 9 1039 1224 62 0 0 chr11 59567833 59567978 -62275878 + B1_Mus2 SINE Alu 1 145 -2 9 1039 188 282 123 35 chr11 59574011 59574125 -62269731 + L3 LINE CR1 1678 1801 -2688 9 1039 335 297 124 95 chr11 59576152 59576435 -62267421 + B4A SINE B4 1 291 -1 9 1039 925 150 14 7 chr11 59576539 59576687 -62267169 - B1_Mur4 SINE Alu 0 150 2 9 1039 430 315 59 41 chr11 59578147 59578316 -62265540 - ID_B1 SINE B4 -14 210 39 1 1039 462 287 34 17 chr11 59579219 59579336 -62264520 + PB1D7 SINE Alu 1 119 -1 1 1039 1203 81 0 0 chr11 59579484 59579632 -62264224 + B1_Mus1 SINE Alu 1 148 0 1 1039 204 125 0 0 chr11 59579632 59579664 -62264192 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1039 551 315 97 38 chr11 59580935 59581247 -62262609 + MER2 DNA MER2_type 1 330 -15 1 1039 258 302 58 0 chr11 59581681 59581765 -62262091 + ID4_ SINE ID 9 96 -56 1 1039 1024 123 171 0 chr11 59582117 59582304 -62261552 + URR1A DNA MER1_type 6 224 -2 1 1039 1352 45 96 6 chr11 59583904 59584082 -62259774 + B2_Mm2 SINE B2 2 195 0 1 1039 184 250 18 143 chr11 59586635 59586747 -62257109 - L3 LINE CR1 -2243 2246 2149 1 1039 267 103 0 0 chr11 59588560 59588599 -62255257 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1039 1250 48 0 0 chr11 59591504 59591651 -62252205 + B1_Mm SINE Alu 1 147 0 1 1039 218 29 59 0 chr11 59591651 59591685 -62252171 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1039 279 236 191 0 chr11 59591904 59591993 -62251863 + PB1D10 SINE Alu 1 106 -11 1 1039 507 203 136 30 chr11 59592863 59592995 -62250861 + B1_Mur2 SINE Alu 2 147 -2 1 1039 345 170 14 29 chr11 59594686 59594767 -62249089 - ID4_ SINE ID -58 94 15 1 1039 426 214 37 7 chr11 59595010 59595112 -62248744 + PB1D10 SINE Alu 2 104 -13 1 1039 206 283 0 0 chr11 59595486 59595532 -62248324 + G-rich Low_complexity Low_complexity 2 47 0 1 1039 535 270 65 74 chr11 59595822 59596121 -62247735 + RMER10A LTR ERVL 17 291 -107 1 1039 233 200 254 16 chr11 59596186 59596308 -62247548 + L1M4 LINE L1 4264 4414 -1732 1 1039 253 283 78 70 chr11 59596904 59597033 -62246823 + L1M4 LINE L1 4547 4676 -1470 1 1039 258 247 106 53 chr11 59597135 59597229 -62246627 + L1M4 LINE L1 4844 4942 -1204 1 1039 204 40 0 0 chr11 59597639 59597664 -62246192 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1039 691 189 39 0 chr11 59597674 59597801 -62246055 + B1_Mur1 SINE Alu 1 132 -17 1 1039 1247 41 0 0 chr11 59599512 59599658 -62244198 - B1_Mm SINE Alu 0 147 2 1 1039 456 125 120 40 chr11 59601293 59601393 -62242463 - B1_Mm SINE Alu -32 117 10 1 1039 475 224 84 12 chr11 59601393 59601560 -62242296 - L1_Rod LINE L1 -1685 4162 3984 1 1039 601 283 77 123 chr11 59601563 59601994 -62241862 + Lx9 LINE L1 6803 7213 -431 1 1039 283 289 172 66 chr11 59602400 59602522 -62241334 - B1F SINE Alu -13 136 2 1 1039 2313 76 33 57 chr11 59602703 59603038 -62240818 - ORR1A2 LTR MaLR 0 327 1 1 1039 11217 127 60 8 chr11 59603038 59604903 -62238953 - ORR1A2-int LTR MaLR 0 1963 1 1 1039 2345 88 31 3 chr11 59604903 59605221 -62238635 - ORR1A2 LTR MaLR 0 327 1 1 1039 616 273 7 0 chr11 59605507 59605646 -62238210 + B1F SINE Alu 10 149 0 1 1039 426 153 9 68 chr11 59606477 59606580 -62237276 + PB1 SINE Alu 25 114 -6 1 1039 1156 61 0 26 chr11 59606590 59606741 -62237115 + B1_Mus1 SINE Alu 2 148 0 1 1039 758 135 33 72 chr11 59607291 59607443 -62236413 - B1_Mus2 SINE Alu 0 147 2 1 1039 1359 156 0 18 chr11 59608152 59608381 -62235475 + URR1B DNA MER1_type 1 225 0 1 1039 1213 55 0 14 chr11 59609571 59609719 -62234137 - B1_Mm SINE Alu -1 146 1 1 1039 482 145 0 0 chr11 59609773 59609849 -62234007 + B1_Mur4 SINE Alu 1 76 -74 1 1039 205 200 40 0 chr11 59610071 59610121 -62233735 + C-rich Low_complexity Low_complexity 2 53 0 1 1039 263 234 121 105 chr11 59610327 59610451 -62233405 - RSINE1 SINE B4 -166 126 1 1 1039 29 70 0 0 chr11 59610670 59610727 -62233129 + AT_rich Low_complexity Low_complexity 1 57 0 1 1039 270 296 137 39 chr11 59610727 59610829 -62233027 + PB1D10 SINE Alu 1 112 -5 1 1039 752 323 47 25 chr11 59611085 59611361 -62232495 + B4 SINE B4 11 292 0 1 1039 390 264 160 91 chr11 59612464 59612727 -62231129 + RMER15 LTR ERVL 10 290 -285 1 1039 491 277 3 14 chr11 59613289 59613462 -62230394 + L1M2 LINE L1 5316 5488 -803 1 1039 650 206 63 0 chr11 59613467 59613593 -62230263 + B3 SINE B2 3 136 -80 1 1039 397 136 27 23 chr11 59613600 59613718 -62230138 - B1_Mus2 SINE Alu 0 147 21 1 1039 389 197 13 0 chr11 59613710 59613786 -62230070 + B3 SINE B2 140 216 0 1 1039 567 267 119 52 chr11 59613789 59614058 -62229798 + L1M2 LINE L1 5479 5765 -532 1 1039 840 91 74 22 chr11 59615203 59615338 -62228518 + B1_Mur4 SINE Alu 9 150 0 1 1039 228 238 0 0 chr11 59615347 59615410 -62228446 + A-rich Low_complexity Low_complexity 1 63 0 1 1039 551 276 45 32 chr11 59616149 59616306 -62227550 - B3A SINE B2 -39 159 1 1 1039 207 0 0 0 chr11 59616697 59616720 -62227136 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1039 1050 169 34 10 chr11 59616728 59616937 -62226919 - B3 SINE B2 -1 215 2 1 1039 866 128 7 39 chr11 59617489 59617643 -62226213 + B1_Mur4 SINE Alu 2 150 0 1 1039 561 99 0 0 chr11 59617648 59617729 -62226127 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 1 1039 277 169 155 58 chr11 59617818 59617897 -62225959 - B1_Mus2 SINE Alu 0 150 66 1 1039 195 100 0 0 chr11 59619080 59619110 -62224746 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 1 1039 308 181 275 33 chr11 59619355 59619475 -62224381 + B1F2 SINE Alu 1 149 0 1 1039 380 248 109 55 chr11 59620970 59621098 -62222758 + ID_B1 SINE B4 89 223 -1 1 1039 1082 90 14 0 chr11 59621581 59621725 -62222131 + B1_Mm SINE Alu 2 147 0 1 1039 194 0 39 0 chr11 59621725 59621751 -62222105 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1039 1398 65 54 5 chr11 59621757 59621942 -62221914 + B2_Mm2 SINE B2 2 195 0 1 1039 1099 42 34 27 chr11 59623976 59624123 -62219733 + B1_Mus1 SINE Alu 1 148 0 1 1039 1252 100 0 32 chr11 59624156 59624342 -62219514 + B2_Mm2 SINE B2 2 181 -14 1 1039 845 207 77 31 chr11 59625286 59625480 -62218376 + RMER5 LTR ERV1 17 219 -315 1 1039 855 95 0 0 chr11 59625498 59625614 -62218242 + B1_Mus1 SINE Alu 32 147 -1 1 1039 1235 179 55 55 chr11 59625604 59625744 -62218112 + RMER5 LTR ERV1 246 385 -149 1 1039 802 127 104 0 chr11 59625744 59625878 -62217978 + B1_Mus1 SINE Alu 1 148 0 1 1039 1235 179 55 55 chr11 59625878 59626026 -62217830 + RMER5 LTR ERV1 386 534 0 1 1039 459 227 44 117 chr11 59626045 59626276 -62217580 + RLTR20A LTR ERVK 365 578 0 1 1039 555 188 21 0 chr11 59626429 59626525 -62217331 - PB1D9 SINE Alu 0 120 23 1 1039 266 252 271 0 chr11 59626434 59626541 -62217315 - B4 SINE B4 -73 219 84 1 1039 215 213 131 0 chr11 59626577 59626638 -62217218 + PB1 SINE Alu 49 117 -10 1 1039 569 124 22 11 chr11 59626638 59626728 -62217128 + 5S rRNA rRNA 1 91 -30 1 1039 554 314 0 25 chr11 59626764 59626848 -62217008 + ID SINE ID 1 80 -144 1 1039 277 258 54 43 chr11 59626848 59626941 -62216915 + PB1D10 SINE Alu 3 96 -21 1 1039 868 236 34 48 chr11 59627190 59627399 -62216457 - B3 SINE B2 -10 206 1 1 1039 217 233 0 0 chr11 59627579 59627622 -62216234 - B1F SINE Alu -7 142 100 1 1039 678 126 92 0 chr11 59628272 59628391 -62215465 + B3 SINE B2 1 130 -86 1 1039 1102 101 68 5 chr11 59628678 59628868 -62214988 + RLTR47_MM LTR ERV1 248 449 -83 1 1039 23 0 0 0 chr11 59628904 59628927 -62214929 + AT_rich Low_complexity Low_complexity 1 23 0 1 1039 1406 56 56 0 chr11 59628928 59629106 -62214750 + B2_Mm2 SINE B2 1 188 -7 1 1039 380 304 163 0 chr11 59629120 59629255 -62214601 - RSINE1 SINE B4 -6 159 3 1 1039 504 0 0 0 chr11 59629314 59629370 -62214486 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1039 355 360 29 14 chr11 59629382 59629520 -62214336 - RSINE1 SINE B4 -25 140 1 1 1039 647 200 44 7 chr11 59629650 59629786 -62214070 + B1F2 SINE Alu 1 141 -8 1 1039 313 351 7 29 chr11 59629832 59629970 -62213886 - RSINE1 SINE B4 -17 148 14 1 1039 213 319 43 0 chr11 59630010 59630079 -62213777 - ID SINE ID -151 73 2 1 1039 233 284 85 78 chr11 59630164 59630317 -62213539 - RSINE1 SINE B4 -8 157 4 1 1039 370 246 296 20 chr11 59630400 59630599 -62213257 - B4A SINE B4 -35 257 4 1 1039 440 279 58 0 chr11 59630751 59630855 -62213001 + RSINE1 SINE B4 2 111 -54 1 1039 995 136 14 0 chr11 59630898 59631045 -62212811 + B1_Mur4 SINE Alu 1 149 -1 1 1039 965 124 15 0 chr11 59632158 59632295 -62211561 + B1_Mur4 SINE Alu 1 139 -11 1 1039 625 212 8 8 chr11 59632415 59632534 -62211322 - RSINE1 SINE B4 -45 120 2 1 1039 781 237 48 82 chr11 59632690 59632897 -62210959 - B3 SINE B2 -14 202 3 1 1039 225 304 147 0 chr11 59632919 59633021 -62210835 - PB1D10 SINE Alu 0 117 1 1 1039 267 103 0 0 chr11 59633623 59633662 -62210194 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1039 387 247 0 0 chr11 59633869 59633942 -62209914 - B3 SINE B2 -105 111 39 1 1039 260 266 50 26 chr11 59634031 59634123 -62209733 - B1F SINE Alu -54 95 3 1 1039 241 237 66 0 chr11 59634453 59634529 -62209327 + L1ME3A LINE L1 5895 5975 -198 1 1039 1099 69 0 0 chr11 59634632 59634776 -62209080 + B1_Mm SINE Alu 4 147 0 1 1039 439 260 44 82 chr11 59634633 59634792 -62209064 + B4A SINE B4 91 243 -49 1 1039 569 241 7 40 chr11 59635610 59635761 -62208095 + B1_Mur1 SINE Alu 2 147 -2 1 1039 40 0 0 0 chr11 59636173 59636213 -62207643 + AT_rich Low_complexity Low_complexity 1 40 0 1 1039 770 191 29 0 chr11 59636367 59636503 -62207353 - B1F2 SINE Alu -5 144 5 1 1039 292 287 73 18 chr11 59637076 59637186 -62206670 - PB1D10 SINE Alu 0 117 2 1 1039 548 233 9 0 chr11 59637228 59637344 -62206512 + PB1D10 SINE Alu 1 117 0 1 1040 876 184 0 0 chr11 59638679 59638820 -62205036 - B1_Mur4 SINE Alu 0 150 10 2 1040 308 182 197 0 chr11 59638880 59638946 -62204910 - ID4_ SINE ID -2 81 3 2 1040 574 219 48 16 chr11 59638981 59639137 -62204719 - B1_Mus1 SINE Alu -1 149 1 2 1040 391 153 39 39 chr11 59640101 59640203 -62203653 - L1Md_F3 LINE L1 -2 6582 6481 2 1040 288 316 40 0 chr11 59640203 59640279 -62203577 - RSINE1 SINE B4 -73 92 14 2 1040 246 62 0 0 chr11 59640296 59640328 -62203528 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1040 557 211 181 0 chr11 59640330 59640463 -62203393 - U1 snRNA snRNA -4 161 5 2 1040 1014 252 130 28 chr11 59640571 59641077 -62202779 - L1MB7 LINE L1 -12 6172 5615 2 1040 278 306 36 0 chr11 59641090 59641178 -62202678 - ID4_ SINE ID -59 93 5 2 1040 429 266 53 9 chr11 59641700 59641814 -62202042 + PB1D7 SINE Alu 2 120 0 2 1040 480 259 33 59 chr11 59641979 59642131 -62201725 + B1_Mur3 SINE Alu 2 149 0 2 1040 739 184 7 45 chr11 59642384 59642538 -62201318 + B1_Mur4 SINE Alu 1 148 -2 2 1040 333 94 398 18 chr11 59643041 59643149 -62200707 - B2_Mm2 SINE B2 0 195 47 2 1040 1019 111 105 0 chr11 59643162 59643324 -62200532 - B2_Mm1t SINE B2 -14 179 1 2 1040 982 260 54 11 chr11 59644014 59644294 -62199562 + B4A SINE B4 1 292 0 2 1040 723 138 0 18 chr11 59644633 59644744 -62199112 - B1_Mur4 SINE Alu -6 144 36 2 1040 2187 111 6 39 chr11 59644846 59645176 -62198680 + ORR1A2 LTR MaLR 1 319 -8 2 1040 606 215 0 0 chr11 59645176 59645283 -62198573 - ID_B1 SINE B4 -12 212 106 2 1040 328 193 1020 0 chr11 59645321 59645421 -62198435 - B3 SINE B2 -14 202 140 2 1040 1225 41 0 7 chr11 59645467 59645614 -62198242 + B1_Mm SINE Alu 2 147 0 2 1040 247 261 124 11 chr11 59645798 59645887 -62197969 + L1MC4 LINE L1 7751 7849 -193 2 1040 352 269 21 11 chr11 59646102 59646196 -62197660 - BC1_Mm scRNA scRNA -55 97 3 2 1040 940 220 65 0 chr11 59646750 59646950 -62196906 + B3 SINE B2 2 214 -2 2 1040 748 191 14 14 chr11 59647103 59647246 -62196610 - B1_Mur2 SINE Alu -6 143 1 2 1040 534 327 52 0 chr11 59647317 59647470 -62196386 + RSINE1 SINE B4 3 163 -2 2 1040 1198 75 114 6 chr11 59647845 59648020 -62195836 - B2_Mm2 SINE B2 0 195 2 2 1040 829 150 219 16 chr11 59648112 59648295 -62195561 + URR1B DNA MER1_type 1 220 -5 2 1040 1137 95 0 0 chr11 59648468 59648616 -62195240 + B1_Mus1 SINE Alu 1 148 0 2 1040 307 300 0 57 chr11 59648715 59648821 -62195035 + PB1D10 SINE Alu 18 117 0 2 1040 540 257 46 7 chr11 59648828 59648981 -62194875 + RSINE1 SINE B4 3 161 -4 2 1040 697 162 185 12 chr11 59649401 59649563 -62194293 + B3A SINE B2 7 196 -2 2 1040 324 62 0 40 chr11 59649579 59649629 -62194227 + B1_Mur4 SINE Alu 101 148 -2 2 1040 1502 78 5 0 chr11 59649629 59649820 -62194036 + B2_Mm2 SINE B2 2 193 -2 2 1040 1002 250 5 5 chr11 59649884 59650097 -62193759 + B3 SINE B2 4 216 0 2 1040 850 152 7 46 chr11 59650122 59650274 -62193582 + B1_Mm SINE Alu 2 147 0 2 1040 222 35 0 0 chr11 59651217 59651234 -62192622 + (A)n Simple_repeat Simple_repeat 1 17 0 2 1040 1644 42 0 0 chr11 59651234 59651427 -62192429 + B2_Mm1a SINE B2 1 193 0 2 1040 222 35 0 0 chr11 59651427 59651438 -62192418 + (A)n Simple_repeat Simple_repeat 1 11 0 2 1040 396 179 25 25 chr11 59651468 59651548 -62192308 + PB1D9 SINE Alu 41 120 0 2 1040 302 336 65 32 chr11 59651728 59651882 -62191974 - L1MC4a LINE L1 -1952 5930 5772 2 1040 505 254 73 57 chr11 59651887 59652079 -62191777 - B3A SINE B2 -3 195 1 2 1040 464 234 9 9 chr11 59652093 59652201 -62191655 - PB1D9 SINE Alu -8 112 5 2 1040 778 234 105 0 chr11 59654458 59654667 -62189189 - RMER21A LTR ERV1 -320 627 397 2 1040 766 142 101 36 chr11 59655754 59655893 -62187963 - B1_Mur2 SINE Alu 0 149 2 2 1040 23 0 0 0 chr11 59656518 59656541 -62187315 + AT_rich Low_complexity Low_complexity 1 23 0 2 1040 660 185 67 0 chr11 59656577 59656696 -62187160 - B3 SINE B2 -88 128 2 2 1040 250 326 11 0 chr11 59656798 59656893 -62186963 - MuLV-int LTR ERV1 -4777 2829 2734 2 1040 463 250 30 0 chr11 59657556 59657688 -62186168 - MER2 DNA MER2_type -80 265 130 2 1040 670 200 14 14 chr11 59657754 59657896 -62185960 - B1_Mur1 SINE Alu -7 142 1 2 1040 1210 55 7 0 chr11 59658862 59659008 -62184848 - B1_Mus1 SINE Alu -1 147 1 2 1040 630 292 63 9 chr11 59659592 59659813 -62184043 - RMER15 LTR ERVL -68 507 275 2 1040 2517 68 3 0 chr11 59659926 59660236 -62183620 + RLTR10E LTR ERVK 1 311 0 2 1040 551 243 0 0 chr11 59660342 59660449 -62183407 - B3 SINE B2 -25 191 85 2 1040 486 265 67 15 chr11 59660450 59660584 -62183272 - Lx9 LINE L1 -353 7291 7151 2 1040 273 146 0 0 chr11 59660725 59660773 -62183083 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1040 475 212 82 33 chr11 59660778 59660900 -62182956 - B3 SINE B2 -26 190 63 2 1040 259 209 29 15 chr11 59662156 59662224 -62181632 - ID4_ SINE ID -14 69 1 2 1040 329 260 36 63 chr11 59662247 59662358 -62181498 - B1F SINE Alu -21 128 21 2 1040 291 233 27 14 chr11 59663513 59663587 -62180269 + ID2 SINE ID 3 77 -6 2 1040 825 230 99 5 chr11 59663902 59664094 -62179762 - B3 SINE B2 -6 210 1 2 1040 195 246 0 0 chr11 59664168 59664225 -62179631 + GA-rich Low_complexity Low_complexity 2 58 0 2 1040 327 260 65 0 chr11 59664236 59664313 -62179543 + ID4_ SINE ID 2 83 0 2 1040 465 302 118 32 chr11 59664584 59664899 -62178957 - MER2 DNA MER2_type -3 342 1 2 1040 590 222 0 0 chr11 59665709 59665817 -62178039 + B1_Mus2 SINE Alu 40 147 0 2 1040 600 330 78 7 chr11 59666617 59666913 -62176943 - L1MB7 LINE L1 -52 6132 5816 2 1040 244 293 39 39 chr11 59666925 59666954 -62176902 - ID SINE ID -144 80 3 2 1040 251 229 0 20 chr11 59666954 59667003 -62176853 - ID4 SINE ID -33 50 3 2 1040 819 264 64 12 chr11 59667012 59667368 -62176488 - L1MB7 LINE L1 -361 5807 5431 2 1040 1214 175 23 14 chr11 59667368 59667582 -62176274 - B3 SINE B2 0 216 1 2 1040 483 63 0 0 chr11 59667610 59667673 -62176183 + (CCTA)n Simple_repeat Simple_repeat 2 64 0 2 1040 1708 201 50 11 chr11 59667716 59668074 -62175782 - ORR1D1 LTR MaLR 0 374 3 2 1040 557 178 0 8 chr11 59668110 59668229 -62175627 + CT-rich Low_complexity Low_complexity 4 121 0 2 1040 712 236 28 14 chr11 59668229 59668371 -62175485 - B1_Mur2 SINE Alu 0 149 6 2 1040 311 202 148 20 chr11 59668402 59668503 -62175353 - L1M4 LINE L1 -1207 4939 4826 2 1040 533 283 78 28 chr11 59668610 59668752 -62175104 + RSINE1 SINE B4 2 150 -15 2 1040 207 0 0 0 chr11 59668763 59668786 -62175070 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1040 4202 219 108 62 chr11 59669015 59669300 -62174556 - Lx9 LINE L1 -2 7642 7359 2 1040 1175 88 0 0 chr11 59669300 59669448 -62174408 - B1_Mus1 SINE Alu 0 148 1 2 1040 4202 219 108 62 chr11 59669448 59670459 -62173397 - Lx9 LINE L1 -286 7358 6286 2 1040 558 263 98 0 chr11 59670553 59670686 -62173170 + RSINE1 SINE B4 8 153 -12 2 1040 242 174 0 0 chr11 59670735 59670781 -62173075 + Lx8 LINE L1 7426 7471 -2 2 1040 697 239 94 6 chr11 59670926 59671107 -62172749 + B3 SINE B2 1 197 -19 2 1040 187 246 17 34 chr11 59671759 59671818 -62172038 + MIRc SINE MIR 99 156 -112 2 1040 771 287 42 10 chr11 59671931 59672241 -62171615 + L1MB7 LINE L1 5815 6134 -50 2 1040 464 265 29 74 chr11 59672256 59672431 -62171425 + ID_B1 SINE B4 56 222 -2 2 1040 744 185 8 23 chr11 59672303 59672436 -62171420 + B1_Mur1 SINE Alu 19 149 0 2 1040 249 254 0 16 chr11 59672791 59672855 -62171001 - B3 SINE B2 -3 213 151 2 1040 414 234 43 0 chr11 59672945 59673039 -62170817 + PB1 SINE Alu 17 114 -13 2 1040 236 254 123 27 chr11 59673823 59673896 -62169960 - ID4_ SINE ID -2 81 2 2 1040 503 244 57 0 chr11 59674691 59674814 -62169042 + B1F1 SINE Alu 1 130 -19 2 1040 366 326 97 0 chr11 59675317 59675461 -62168395 + MER5A DNA MER1_type 24 181 -8 2 1040 224 77 0 25 chr11 59675826 59675866 -62167990 + (CCCCCT)n Simple_repeat Simple_repeat 5 43 0 2 1040 1396 68 15 45 chr11 59676047 59676248 -62167608 + B2_Mm2 SINE B2 1 195 0 2 1040 868 237 130 40 chr11 59676318 59676646 -62167210 + ORR1E LTR MaLR 1 369 -10 2 1040 2259 302 86 21 chr11 59676969 59677366 -62166490 - Lx9 LINE L1 -22 7622 7197 2 1040 1471 82 0 10 chr11 59677366 59677562 -62166294 - B2_Mm2 SINE B2 -1 194 1 2 1040 2259 302 86 21 chr11 59677562 59678186 -62165670 - Lx9 LINE L1 -448 7196 6535 2 1040 271 230 176 11 chr11 59678299 59678490 -62165366 - L1M4 LINE L1 -796 5350 5127 2 1040 621 256 13 38 chr11 59678494 59678652 -62165204 - RSINE1 SINE B4 -4 161 8 2 1040 425 269 46 9 chr11 59678672 59678781 -62165075 - PB1D7 SINE Alu -7 113 1 2 1040 326 245 118 0 chr11 59678876 59678978 -62164878 - L1_Mur1 LINE L1 -822 5064 4951 2 1040 1277 261 105 30 chr11 59678964 59679431 -62164425 - Lx7 LINE L1 -818 6878 6377 2 1040 377 269 19 0 chr11 59679432 59679540 -62164316 - L1_Mur3 LINE L1 -645 5235 5126 2 1040 1971 183 21 0 chr11 59679540 59679922 -62163934 - L1_Mur3 LINE L1 -588 5292 4903 3 1040 354 166 15 0 chr11 59679954 59680032 -62163824 - L1M4 LINE L1 -1110 5036 4955 2 1040 429 175 138 0 chr11 59680263 59680343 -62163513 + B1_Mur4 SINE Alu 53 143 -7 3 1040 456 174 0 0 chr11 59680467 59680553 -62163303 - Lx9 LINE L1 -178 7466 7381 3 1040 311 262 0 12 chr11 59680661 59680746 -62163110 - RMER15-int LTR ERVL -26 4973 4890 3 1040 1190 300 44 13 chr11 59680980 59681456 -62162400 - RMER15-int LTR ERVL -355 4644 4154 3 1040 2617 267 62 18 chr11 59681458 59682248 -62161608 - RMER15-int LTR ERVL -2448 2551 1727 3 1040 302 217 0 16 chr11 59682295 59682356 -62161500 - MTD LTR MaLR -58 361 302 3 1040 198 103 0 0 chr11 59682372 59682401 -62161455 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 3 1040 2866 268 83 21 chr11 59682431 59683423 -62160433 - RMER15-int LTR ERVL -3571 1428 376 3 1040 318 26 0 0 chr11 59683445 59683484 -62160372 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1040 556 197 140 42 chr11 59683485 59683628 -62160228 + MTD LTR MaLR 18 174 -245 3 1040 444 67 0 0 chr11 59683904 59683964 -62159892 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1040 1054 231 54 132 chr11 59684508 59684557 -62159299 - MT2B LTR ERVL -3 598 554 3 1040 468 0 0 0 chr11 59684557 59684609 -62159247 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1040 1054 201 94 121 chr11 59684609 59684940 -62158916 - MT2B LTR ERVL -48 553 108 3 1040 1102 82 0 7 chr11 59684940 59685087 -62158769 - B1_Mus1 SINE Alu -1 147 2 3 1040 1048 194 103 118 chr11 59685087 59685159 -62158697 - MT2B LTR ERVL -426 107 38 3 1040 1258 89 56 0 chr11 59685286 59685465 -62158391 + B2_Mm2 SINE B2 1 189 -6 3 1040 237 163 70 0 chr11 59685469 59685512 -62158344 - MT2B LTR ERVL -555 46 1 3 1040 234 246 0 15 chr11 59686514 59686580 -62157276 + GA-rich Low_complexity Low_complexity 1 65 0 3 1040 386 176 0 12 chr11 59686606 59686692 -62157164 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 1040 1179 82 0 0 chr11 59687104 59687250 -62156606 + B1_Mus2 SINE Alu 2 147 0 3 1040 550 227 109 0 chr11 59690535 59690663 -62153193 + B1F1 SINE Alu 5 146 -3 3 1040 5121 160 86 3 chr11 59691131 59692101 -62151755 - MTC-int LTR MaLR -28 1230 181 3 1040 1954 169 92 11 chr11 59692132 59692514 -62151342 - MTC LTR MaLR -8 413 1 3 1040 936 79 251 48 chr11 59693378 59693565 -62150291 + URR1A DNA MER1_type 2 226 0 3 1040 561 153 41 0 chr11 59694574 59694672 -62149184 - B1_Mus2 SINE Alu 0 147 46 3 1040 282 56 0 0 chr11 59694887 59694923 -62148933 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 3 1040 886 153 20 27 chr11 59696623 59696771 -62147085 - B1_Mur3 SINE Alu 0 149 3 3 1040 679 250 67 22 chr11 59696773 59696932 -62146924 + B3A SINE B2 11 173 -25 3 1040 333 0 0 0 chr11 59696932 59696969 -62146887 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1040 679 250 67 22 chr11 59696969 59696989 -62146867 + B3A SINE B2 174 198 0 3 1040 1241 175 9 36 chr11 59697042 59697261 -62146595 - B3 SINE B2 -3 213 1 3 1040 180 286 43 87 chr11 59698804 59698873 -62144983 - L2 LINE L2 -3109 310 245 3 1040 1947 146 116 3 chr11 59699545 59699882 -62143974 - ORR1C1 LTR MaLR 0 378 4 3 1040 254 285 94 58 chr11 59700125 59700263 -62143593 + Tigger5 DNA MER2_type 88 230 -2176 3 1040 760 161 496 24 chr11 59700289 59700402 -62143454 + ORR1D1 LTR MaLR 1 180 -194 3 1040 378 0 0 0 chr11 59700402 59700444 -62143412 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1040 760 161 496 24 chr11 59700444 59700584 -62143272 + ORR1D1 LTR MaLR 181 373 -1 3 1040 6905 170 57 19 chr11 59700584 59700919 -62142937 + ORR1D1-int LTR MaLR 1 345 -1025 3 1040 4540 12 0 0 chr11 59700919 59701412 -62142444 + MT2_Mm LTR ERVL 1 493 0 3 1040 6905 170 57 19 chr11 59701412 59702395 -62141461 + ORR1D1-int LTR MaLR 346 1369 -1 3 1040 811 188 86 23 chr11 59702398 59702572 -62141284 + ORR1D1 LTR MaLR 3 187 -187 3 1040 708 234 123 114 chr11 59702572 59702905 -62140951 - RLTR18 LTR ERVK 0 616 281 3 1040 992 271 147 15 chr11 59703317 59703643 -62140213 + MTE2b LTR MaLR 2 370 -9 3 1040 337 250 24 0 chr11 59703887 59703971 -62139885 + L1MB1 LINE L1 5844 5929 -239 3 1040 1333 213 53 29 chr11 59703987 59704339 -62139517 + MTEb LTR MaLR 6 344 -15 3 1040 242 291 25 12 chr11 59704489 59704569 -62139287 - BC1_Mm scRNA scRNA -65 87 7 3 1040 251 292 0 44 chr11 59704637 59704705 -62139151 + PB1 SINE Alu 6 70 -57 3 1040 517 274 34 8 chr11 59704714 59704832 -62139024 + RSINE1 SINE B4 9 129 -36 3 1040 661 157 78 62 chr11 59704847 59704861 -62138995 - B1_Mur3 SINE Alu 0 149 140 3 1040 234 0 0 0 chr11 59704861 59704887 -62138969 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1040 661 157 78 62 chr11 59704887 59705001 -62138855 - B1_Mur3 SINE Alu -10 139 19 3 1040 23 33 0 0 chr11 59705001 59705031 -62138825 + AT_rich Low_complexity Low_complexity 1 30 0 3 1040 928 125 14 0 chr11 59705225 59705369 -62138487 - URR1A DNA MER1_type -2 224 79 3 1040 719 178 31 0 chr11 59706206 59706335 -62137521 + MT2B LTR ERVL 1 133 -468 3 1040 1251 162 48 169 chr11 59706335 59706691 -62137165 + MT2B LTR ERVL 289 601 0 3 1040 370 296 169 37 chr11 59707129 59707371 -62136485 + L1MC4 LINE L1 6757 7030 -1012 3 1040 213 39 0 0 chr11 59708270 59708296 -62135560 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1040 261 0 0 0 chr11 59708461 59708490 -62135366 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1040 405 311 42 0 chr11 59708560 59708679 -62135177 - RSINE1 SINE B4 -36 129 6 3 1040 229 240 0 0 chr11 59709126 59709176 -62134680 - ID4 SINE ID -32 51 2 3 1040 489 323 158 56 chr11 59709176 59709643 -62134213 - MLT1F2 LTR MaLR -38 522 5 3 1040 255 122 0 0 chr11 59710928 59710977 -62132879 + (C)n Simple_repeat Simple_repeat 1 49 0 3 1040 297 109 0 0 chr11 59712884 59712939 -62130917 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 3 1040 396 0 0 0 chr11 59713149 59713193 -62130663 + (TGG)n Simple_repeat Simple_repeat 3 46 0 3 1040 227 321 0 0 chr11 59714187 59714279 -62129577 - MIRm SINE MIR -105 171 77 3 1040 502 189 8 16 chr11 59714926 59714964 -62128892 + polypyrimidine Low_complexity Low_complexity 93 130 0 3 1040 1545 47 5 20 chr11 59714964 59715160 -62128696 - B2_Mm1a SINE B2 0 193 1 3 1040 502 189 8 16 chr11 59715160 59715250 -62128606 + polypyrimidine Low_complexity Low_complexity 4 92 0 3 1040 529 261 27 40 chr11 59715250 59715398 -62128458 - B1F1 SINE Alu 0 149 4 3 1040 261 0 0 0 chr11 59715899 59715928 -62127928 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1040 275 257 225 46 chr11 59716651 59716802 -62127054 - RMER5 LTR ERV1 -8 526 349 3 1040 340 285 34 68 chr11 59716844 59716991 -62126865 - MTC-int LTR MaLR -2 1256 1115 3 1040 1286 106 55 14 chr11 59716968 59717188 -62126668 - MTC-int LTR MaLR -1028 230 2 3 1040 508 131 71 0 chr11 59717187 59717271 -62126585 - MTC LTR MaLR 0 421 332 3 1040 2027 173 18 36 chr11 59717282 59717333 -62126523 - MTC LTR MaLR -44 377 333 3 1040 2115 172 54 19 chr11 59717333 59717760 -62126096 - RMER10A LTR ERVL 0 442 1 3 1040 2027 173 18 36 chr11 59717760 59718092 -62125764 - MTC LTR MaLR -89 332 1 3 1040 909 269 56 66 chr11 59718092 59718394 -62125462 - RMER5 LTR ERV1 -218 316 18 3 1040 561 204 53 9 chr11 59718984 59719098 -62124758 - ORR1D1 LTR MaLR 0 374 256 3 1040 352 226 0 0 chr11 59719208 59719270 -62124586 + B4 SINE B4 217 278 -14 3 1040 270 0 0 0 chr11 59719271 59719301 -62124555 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1040 1089 299 58 8 chr11 59719509 59719870 -62123986 - MTEa LTR MaLR 0 379 1 3 1040 504 240 101 0 chr11 59720001 59720130 -62123726 - Lx7 LINE L1 -1014 6682 6541 3 1040 203 188 0 20 chr11 59720232 59720281 -62123575 + CT-rich Low_complexity Low_complexity 3 50 0 3 1040 347 257 8 50 chr11 59720281 59720334 -62123522 - L1MD LINE L1 -2949 3197 3144 3 1040 493 50 456 19 chr11 59720334 59720437 -62123419 - B1_Mus1 SINE Alu 0 148 1 3 1040 771 104 92 43 chr11 59720443 59720584 -62123272 - B1_Mur2 SINE Alu -1 148 1 3 1040 347 257 8 50 chr11 59720584 59720642 -62123214 - L1MD LINE L1 -3008 3138 3085 3 1040 459 266 119 5 chr11 59720657 59720842 -62123014 + L1MB3 LINE L1 5683 5888 -295 3 1040 248 0 0 30 chr11 59721085 59721118 -62122738 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1040 1082 73 7 0 chr11 59721354 59721491 -62122365 - B1_Mus1 SINE Alu -8 140 3 3 1040 912 122 30 8 chr11 59723017 59723149 -62120707 + B1_Mm SINE Alu 5 139 -8 3 1040 291 54 0 0 chr11 59723281 59723318 -62120538 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 3 1040 973 292 133 7 chr11 59723439 59723748 -62120108 - MTE2b LTR MaLR -7 372 26 3 1040 230 256 122 0 chr11 59724111 59724193 -62119663 - L3 LINE CR1 -98 4391 4300 3 1040 278 286 54 11 chr11 59725857 59725949 -62117907 + MER5A1 DNA MER1_type 32 127 -39 3 1040 392 295 67 112 chr11 59726238 59726505 -62117351 + MLT1B LTR MaLR 58 312 -78 3 1040 288 0 0 0 chr11 59727126 59727158 -62116698 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1040 832 280 151 36 chr11 59727159 59727496 -62116360 - MER44B DNA MER2_type -109 441 66 3 1040 1424 131 70 104 chr11 59727694 59727881 -62115975 + Lx7 LINE L1 1326 1487 -4393 3 1040 1170 61 0 13 chr11 59727881 59728030 -62115826 + B1_Mm SINE Alu 1 147 0 3 1040 1424 131 70 104 chr11 59728030 59728244 -62115612 + Lx7 LINE L1 1488 1713 -4167 3 1040 1915 169 47 71 chr11 59728240 59728706 -62115150 + Lx7 LINE L1 4643 5097 -783 3 1040 4511 141 88 53 chr11 59728707 59729578 -62114278 - RMER19B LTR ERVK 0 902 1 3 1040 980 190 58 27 chr11 59729586 59729846 -62114010 + Lx7 LINE L1 5101 5368 -512 3 1040 4526 208 44 58 chr11 59729846 59731049 -62112807 + Lx7 LINE L1 5540 6726 -970 3 1040 1521 199 81 16 chr11 59731042 59731424 -62112432 + Lx7 LINE L1 7001 7407 -289 3 1040 267 103 0 0 chr11 59732018 59732057 -62111799 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 1040 243 314 28 71 chr11 59732180 59732259 -62111597 + L1MEg LINE L1 2245 2312 -4276 3 1040 1232 41 0 7 chr11 59732259 59732399 -62111457 + B1_Mus1 SINE Alu 1 140 -8 3 1040 284 48 0 23 chr11 59732399 59732442 -62111414 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 3 1040 362 306 23 32 chr11 59732448 59732766 -62111090 + L1MEg LINE L1 2000 2621 -3967 3 1040 291 333 23 0 chr11 59732978 59733155 -62110701 + L1MEg LINE L1 2832 3012 -3833 3 1040 275 191 0 0 chr11 59733223 59733270 -62110586 - Lx7 LINE L1 -931 6765 6719 3 1040 1501 300 41 66 chr11 59733268 59734238 -62109618 + L1_Rod LINE L1 4789 5686 -161 3 1040 261 0 0 0 chr11 59734238 59734267 -62109589 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1040 1501 297 41 68 chr11 59734267 59734429 -62109427 + L1_Rod LINE L1 5687 5846 -1 3 1040 1695 177 158 3 chr11 59734716 59735078 -62108778 - MTC LTR MaLR -3 418 1 3 1040 490 320 16 0 chr11 59735759 59735881 -62107975 + RSINE1 SINE B4 1 124 -41 3 1040 275 49 24 0 chr11 59735881 59735922 -62107934 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1040 3039 60 38 15 chr11 59736130 59736521 -62107335 - MTB LTR MaLR 0 400 1 3 1040 405 312 50 7 chr11 59736830 59736969 -62106887 + ORR1E LTR MaLR 1 145 -214 3 1040 22 0 0 30 chr11 59737066 59737083 -62106773 + AT_rich Low_complexity Low_complexity 1 17 0 3 1040 3912 29 0 0 chr11 59737083 59737528 -62106328 - L1Md_T LINE L1 0 6582 6138 3 1040 22 0 0 30 chr11 59737528 59737543 -62106313 + AT_rich Low_complexity Low_complexity 1 15 0 3 1040 228 184 0 0 chr11 59737543 59737592 -62106264 + (TATG)n Simple_repeat Simple_repeat 1 49 0 3 1040 339 228 307 46 chr11 59737594 59737835 -62106021 - B4 SINE B4 -16 276 3 4 1040 320 348 79 37 chr11 59738357 59738521 -62105335 + MER5A DNA MER1_type 15 185 -4 4 1040 279 0 0 0 chr11 59738729 59738760 -62105096 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1040 559 258 34 109 chr11 59738807 59739129 -62104727 + RLTR15 LTR ERVK 44 341 -18 4 1040 4014 241 42 31 chr11 59739152 59740268 -62103588 + Lx9 LINE L1 6360 7487 -157 4 1040 216 0 0 0 chr11 59740312 59740336 -62103520 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 4 1040 1143 72 7 0 chr11 59740344 59740483 -62103373 - B1_Mus1 SINE Alu -7 141 2 4 1040 747 244 77 16 chr11 59741306 59741489 -62102367 + B3A SINE B2 1 194 -4 4 1040 225 297 13 39 chr11 59741571 59741648 -62102208 + RSINE1 SINE B4 8 82 -83 4 1040 411 261 86 37 chr11 59741653 59741816 -62102040 + B4 SINE B4 121 291 -1 4 1040 581 261 85 127 chr11 59741990 59742424 -62101432 - RMER10A LTR ERVL -26 416 1 4 1040 847 188 7 0 chr11 59742826 59742970 -62100886 - B1_Mur1 SINE Alu -1 148 4 4 1040 377 253 70 90 chr11 59742970 59743064 -62100792 - MT2B LTR ERVL -444 157 68 4 1040 861 231 85 20 chr11 59743319 59743518 -62100338 - B3 SINE B2 -3 213 2 4 1040 398 263 32 0 chr11 59743724 59743819 -62100037 - B1F SINE Alu -51 98 1 4 1040 267 271 200 0 chr11 59743940 59744025 -62099831 - B3 SINE B2 -3 213 112 4 1040 210 274 89 81 chr11 59746144 59746267 -62097589 + L4 LINE RTE 1097 1220 -809 4 1040 668 234 86 0 chr11 59746402 59746599 -62097257 - L1MB2 LINE L1 -31 6140 5927 4 1040 398 304 28 43 chr11 59746829 59746970 -62096886 - B1F SINE Alu -1 148 10 4 1040 26 0 0 0 chr11 59747108 59747134 -62096722 + AT_rich Low_complexity Low_complexity 1 26 0 4 1040 252 0 0 0 chr11 59747134 59747162 -62096694 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1040 369 0 0 0 chr11 59747162 59747202 -62096654 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1040 418 281 16 32 chr11 59747202 59747327 -62096529 - RSINE1 SINE B4 -34 131 9 4 1040 207 0 0 0 chr11 59747337 59747360 -62096496 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1040 813 209 0 0 chr11 59747360 59747499 -62096357 - B1_Mur4 SINE Alu -8 142 4 4 1040 242 286 25 49 chr11 59747822 59747903 -62095953 - ID2 SINE ID 0 83 5 4 1040 424 299 57 89 chr11 59748502 59748810 -62095046 + ORR1E LTR MaLR 1 297 -87 4 1040 224 256 75 25 chr11 59749002 59749082 -62094774 + B3 SINE B2 2 85 -131 4 1040 700 241 103 47 chr11 59749084 59749297 -62094559 + RMER1A Other Other 15 239 -791 4 1040 2916 141 111 9 chr11 59749297 59749828 -62094028 + RMER1B Other Other 471 1055 -11 4 1040 769 236 0 0 chr11 59749857 59749997 -62093859 + B3A SINE B2 41 180 -18 4 1040 1093 151 0 56 chr11 59750289 59750486 -62093370 - B3 SINE B2 -1 215 30 4 1040 1207 91 42 36 chr11 59750495 59750688 -62093168 - B2_Mm2 SINE B2 -1 194 1 4 1040 254 188 30 45 chr11 59750923 59750990 -62092866 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 4 1040 249 304 35 30 chr11 59751815 59751967 -62091889 - MLT1J LTR MaLR -219 391 232 4 1040 484 179 18 0 chr11 59753069 59753181 -62090675 + GA-rich Low_complexity Low_complexity 3 116 0 4 1040 1921 164 273 35 chr11 59753195 59753657 -62090199 + RMER15 LTR ERVL 1 572 -3 4 1040 441 305 13 19 chr11 59753665 59753822 -62090034 + GA-rich Low_complexity Low_complexity 4 159 0 4 1040 1192 254 133 26 chr11 59754379 59754718 -62089138 - MTE2b LTR MaLR -3 376 2 4 1040 802 246 112 4 chr11 59755178 59755447 -62088409 + Lx8 LINE L1 7174 7471 -2 4 1040 247 242 51 71 chr11 59755366 59755464 -62088392 + RMER1C Other Other 1243 1338 -4 4 1040 195 250 0 0 chr11 59756260 59756312 -62087544 + GA-rich Low_complexity Low_complexity 1 52 0 4 1040 296 263 39 39 chr11 59756442 59756545 -62087311 + PB1D10 SINE Alu 8 110 -7 4 1040 194 220 17 0 chr11 59756545 59756604 -62087252 + GA-rich Low_complexity Low_complexity 1 60 0 4 1040 1197 56 0 0 chr11 59756622 59756764 -62087092 + B1_Mus1 SINE Alu 2 143 -5 4 1040 188 228 0 17 chr11 59757577 59757635 -62086221 + CT-rich Low_complexity Low_complexity 2 58 0 4 1040 1122 72 0 0 chr11 59758359 59758497 -62085359 + B1_Mus1 SINE Alu 1 138 -10 4 1040 198 0 0 0 chr11 59758497 59758519 -62085337 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1040 192 77 0 0 chr11 59758590 59758616 -62085240 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1040 1248 48 0 0 chr11 59758616 59758763 -62085093 - B1_Mm SINE Alu 0 147 1 4 1040 947 218 15 30 chr11 59758858 59759057 -62084799 - B3 SINE B2 -6 210 15 4 1040 370 246 153 104 chr11 59759161 59759488 -62084368 - MLT1A0 LTR MaLR -2 363 21 4 1040 207 0 0 0 chr11 59759527 59759550 -62084306 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 1040 196 327 36 55 chr11 59759581 59759691 -62084165 - MIR SINE MIR -141 121 14 4 1040 305 319 42 9 chr11 59760276 59760411 -62083445 + MIRb SINE MIR 48 202 -66 4 1040 232 293 8 17 chr11 59761811 59761929 -62081927 + (CCG)n Simple_repeat Simple_repeat 3 119 0 4 1040 1082 51 0 7 chr11 59762545 59762684 -62081172 + B1_Mus1 SINE Alu 9 146 -2 4 1040 677 324 41 20 chr11 59762998 59763244 -62080612 + B4A SINE B4 1 251 -41 4 1040 826 223 105 15 chr11 59763667 59763867 -62079989 - MTC LTR MaLR -8 413 196 4 1040 656 206 16 8 chr11 59763863 59763990 -62079866 - B1_Mus1 SINE Alu -20 128 1 4 1040 855 205 75 20 chr11 59763990 59764189 -62079667 - MTC LTR MaLR -211 210 1 4 1040 490 191 75 9 chr11 59764641 59764747 -62079109 + B1_Mur1 SINE Alu 9 121 -28 4 1040 207 318 32 0 chr11 59764747 59764810 -62079046 + MIR SINE MIR 49 113 -149 4 1040 814 117 148 0 chr11 59765185 59765313 -62078543 - B1_Mus1 SINE Alu 0 148 2 4 1040 710 121 331 6 chr11 59765314 59765480 -62078376 - URR1A DNA MER1_type -6 220 1 4 1040 414 215 31 31 chr11 59766470 59766586 -62077270 - B1_Mur1 SINE Alu 0 149 2 4 1040 420 276 108 35 chr11 59766806 59767134 -62076722 - ORR1E LTR MaLR -1 378 1 4 1040 301 280 27 0 chr11 59767156 59767231 -62076625 + ID4 SINE ID 7 83 0 4 1040 266 306 35 12 chr11 59767231 59767242 -62076614 + ID_B1 SINE B4 7 94 -130 4 1040 572 183 0 57 chr11 59767252 59767374 -62076482 - B1_Mur2 SINE Alu -7 142 28 4 1040 240 59 0 0 chr11 59767678 59767712 -62076144 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1040 875 51 0 25 chr11 59767712 59767821 -62076035 - B1_Mus1 SINE Alu -9 139 31 4 1040 1003 119 14 0 chr11 59768030 59768173 -62075683 - B1_Mur4 SINE Alu -5 145 1 4 16 3334 146 54 45 chr11 59768599 59769228 -62074628 - RMER19B LTR ERVK 0 902 268 4 1041 690 101 45 9 chr11 59769221 59769331 -62074525 - RMER19B LTR ERVK -786 116 3 4 1041 339 255 4 0 chr11 59769563 59769637 -62074219 + ID2 SINE ID 3 78 -74 4 1041 634 222 89 0 chr11 59769685 59769820 -62074036 - B1_Mur3 SINE Alu -1 148 2 4 1041 1155 75 0 7 chr11 59769916 59770064 -62073792 - B1_Mus1 SINE Alu 0 148 2 4 1041 341 264 154 0 chr11 59771429 59771539 -62072317 - PB1 SINE Alu 0 127 1 4 1041 209 256 106 43 chr11 59773741 59773835 -62070021 - L2b LINE L2 -13 3362 3263 4 1041 267 31 0 0 chr11 59776000 59776032 -62067824 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 4 1041 36 0 0 0 chr11 59776693 59776729 -62067127 + AT_rich Low_complexity Low_complexity 1 36 0 4 1041 202 204 0 22 chr11 59779790 59779835 -62064021 - MIRm SINE MIR -123 153 109 4 1041 300 296 19 67 chr11 59780346 59780374 -62063482 + L1M5 LINE L1 3100 3124 -3022 4 1041 1221 68 0 0 chr11 59780374 59780522 -62063334 + B1_Mus1 SINE Alu 1 148 0 4 1041 300 296 19 67 chr11 59780522 59780598 -62063258 + L1M5 LINE L1 3125 3199 -2947 4 1041 423 98 0 0 chr11 59780599 59780660 -62063196 + (GGA)n Simple_repeat Simple_repeat 2 62 0 4 1041 3025 132 101 26 chr11 59782792 59783336 -62060520 + RMER4B LTR ERVK 1 585 0 4 1041 1072 167 108 87 chr11 59783457 59783769 -62060087 + RLTR20B2 LTR ERVK 1 345 -232 4 1041 217 211 0 0 chr11 59785644 59785674 -62058182 + A-rich Low_complexity Low_complexity 1 30 0 4 1041 1239 34 7 0 chr11 59785674 59785820 -62058036 + B1_Mm SINE Alu 1 147 0 4 1041 217 211 0 0 chr11 59785820 59785846 -62058010 + A-rich Low_complexity Low_complexity 31 56 0 4 1041 1231 226 109 57 chr11 59788180 59788565 -62055291 + MTD LTR MaLR 15 419 0 4 1041 238 174 0 0 chr11 59791120 59791166 -62052690 + B3 SINE B2 170 215 -1 4 1041 766 214 35 23 chr11 59791240 59791412 -62052444 - B3 SINE B2 -42 174 1 4 1041 340 330 9 0 chr11 59793104 59793210 -62050646 - PB1 SINE Alu -20 107 1 4 1041 236 304 108 0 chr11 59793370 59793472 -62050384 - MIRc SINE MIR -121 147 35 4 1041 504 335 144 25 chr11 59793543 59794178 -62049678 + L1MB3 LINE L1 5430 6139 -44 4 1041 465 279 81 0 chr11 59794624 59794760 -62049096 + B1F SINE Alu 2 148 -1 4 1041 1104 54 0 81 chr11 59795254 59795415 -62048441 - B1_Mus1 SINE Alu 0 148 1 4 1041 1690 16 5 0 chr11 59795425 59795613 -62048243 - B2_Mm1t SINE B2 -3 190 2 4 1041 198 265 0 0 chr11 59797864 59797932 -62045924 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1041 315 266 250 0 chr11 59797965 59798093 -62045763 + Tigger5 DNA MER2_type 2174 2333 -73 4 1041 3882 159 69 8 chr11 59798294 59799022 -62044834 + RMER19B LTR ERVK 1 772 -130 5 1041 10437 94 4 5 chr11 59799022 59800432 -62043424 + L1_Mus1 LINE L1 4382 5793 -90 5 1041 1389 56 56 0 chr11 59800432 59800611 -62043245 + B2_Mm1a SINE B2 2 190 -3 5 1041 10437 88 27 12 chr11 59800611 59801341 -62042515 + L1_Mus1 LINE L1 5794 6582 0 5 1041 279 309 0 0 chr11 59801533 59801627 -62042229 + L1_Rod LINE L1 3882 3975 -1872 5 1041 691 209 10 53 chr11 59801785 59801978 -62041878 + RMER19B LTR ERVK 547 895 -7 5 1041 862 172 7 0 chr11 59802215 59802360 -62041496 - B1_Mur3 SINE Alu -1 148 3 5 1041 502 242 12 0 chr11 59802743 59802904 -62040952 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 5 1041 524 206 17 75 chr11 59803309 59803482 -62040374 - B3A SINE B2 0 198 36 5 1041 1200 98 0 0 chr11 59804228 59804401 -62039455 + (GGGGA)n Simple_repeat Simple_repeat 4 176 0 5 1041 801 0 0 0 chr11 59804401 59804489 -62039367 + (GAGAA)n Simple_repeat Simple_repeat 1 89 0 5 1041 515 219 209 0 chr11 59804705 59804919 -62038937 + L1M4 LINE L1 4604 4854 -1286 5 1041 1025 171 103 5 chr11 59805472 59805666 -62038190 - B3 SINE B2 -3 213 1 5 1041 1410 51 79 0 chr11 59805739 59805755 -62038101 - B2_Mm1t SINE B2 -2 191 176 5 1041 309 51 0 0 chr11 59805755 59805794 -62038062 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1041 1410 51 79 0 chr11 59805794 59805954 -62037902 - B2_Mm1t SINE B2 -18 175 2 5 1041 851 255 205 33 chr11 59806118 59806455 -62037401 + MTD LTR MaLR 9 403 -16 5 1041 1226 228 0 0 chr11 59806897 59807112 -62036744 + B3 SINE B2 2 216 0 5 1041 830 252 71 50 chr11 59807469 59807749 -62036107 - B4A SINE B4 -2 290 5 5 1041 192 77 0 0 chr11 59808186 59808212 -62035644 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 5 1041 378 303 8 68 chr11 59808301 59808321 -62035535 - PB1D10 SINE Alu -6 111 92 5 1041 4311 110 81 8 chr11 59808321 59808973 -62034883 + Lx4A LINE L1 6359 7058 0 5 1041 378 303 8 68 chr11 59808973 59809069 -62034787 - PB1D10 SINE Alu -26 91 2 5 1041 270 0 0 0 chr11 59811762 59811792 -62032064 + (CAG)n Simple_repeat Simple_repeat 2 31 0 5 1041 256 315 43 21 chr11 59813153 59813247 -62030609 - ORR1E LTR MaLR -215 144 49 5 1041 1070 58 73 0 chr11 59813378 59813515 -62030341 - B1_Mus1 SINE Alu 0 148 2 5 1041 1142 111 6 11 chr11 59813638 59813820 -62030036 + B2_Mm2 SINE B2 15 195 0 5 1041 477 0 0 0 chr11 59814523 59814576 -62029280 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 5 1041 1082 64 14 0 chr11 59814576 59814711 -62029145 - B1_Mus2 SINE Alu -4 143 7 5 1041 1604 96 130 0 chr11 59814711 59814981 -62028875 - ORR1A1 LTR MaLR -41 305 1 5 1041 257 109 43 0 chr11 59815545 59815591 -62028265 + MTE2a LTR MaLR 3 50 -329 5 1041 2361 142 10 53 chr11 59815591 59815984 -62027872 - ORR1C1 LTR MaLR 0 378 3 5 1041 492 339 32 60 chr11 59816027 59816275 -62027581 + MT2A LTR ERVL 184 424 -109 5 1041 471 202 0 0 chr11 59818958 59819062 -62024794 + (CAT)n Simple_repeat Simple_repeat 2 105 0 5 1041 308 320 68 0 chr11 59819062 59819165 -62024691 - RSINE1 SINE B4 -32 133 24 5 1041 22 0 0 0 chr11 59819952 59819974 -62023882 + AT_rich Low_complexity Low_complexity 1 22 0 5 1041 666 245 0 99 chr11 59820077 59820258 -62023598 + RSINE1 SINE B4 3 165 0 5 1041 1159 168 9 27 chr11 59820916 59821136 -62022720 + URR1A DNA MER1_type 5 220 -6 5 1041 544 249 28 105 chr11 59821136 59821153 -62022703 - CYRA11_Mm Unknown Y-chromosome -225 318 165 5 1041 3379 230 134 28 chr11 59822549 59823570 -62020286 - MTE2b-int LTR MaLR -451 1129 1 5 1041 896 308 62 91 chr11 59823574 59823960 -62019896 - MTE2b LTR MaLR -4 375 1 5 1041 1852 208 65 8 chr11 59824202 59824589 -62019267 + Lx6 LINE L1 7026 7434 -26 5 1041 243 0 0 0 chr11 59824590 59824617 -62019239 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1041 1427 162 14 0 chr11 59824924 59825146 -62018710 - URR1B DNA MER1_type 0 225 1 5 1041 535 165 193 0 chr11 59826098 59826207 -62017649 + B1_Mus2 SINE Alu 3 132 -15 5 1041 207 0 0 0 chr11 59826210 59826233 -62017623 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1041 1396 97 0 5 chr11 59826357 59826543 -62017313 - B2_Mm2 SINE B2 -9 186 2 5 1041 1238 82 53 0 chr11 59830819 59830989 -62012867 + B2_Mm1t SINE B2 1 179 -14 5 1041 302 145 37 5 chr11 59831040 59831103 -62012753 + B2_Mm2 SINE B2 47 109 -107 5 1041 416 19 19 0 chr11 59831117 59831170 -62012686 + (GGA)n Simple_repeat Simple_repeat 3 56 0 5 1041 450 0 0 0 chr11 59831170 59831220 -62012636 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 5 1041 260 214 18 0 chr11 59831909 59831965 -62011891 + RMER15 LTR ERVL 1 57 -518 5 1041 1859 244 32 71 chr11 59832073 59832429 -62011427 + RMER15 LTR ERVL 89 421 -154 5 1041 1458 67 0 49 chr11 59832429 59832633 -62011223 - B2_Mm2 SINE B2 -1 194 1 5 1041 1859 244 32 71 chr11 59832633 59832783 -62011073 + RMER15 LTR ERVL 422 575 0 5 1041 202 282 64 0 chr11 59833119 59833197 -62010659 - MIRc SINE MIR -116 152 70 5 1041 5639 94 85 28 chr11 59833490 59834396 -62009460 + RMER17B LTR ERVK 1 958 0 5 1041 2183 212 49 20 chr11 59834690 59835047 -62008809 + MT2A LTR ERVL 1 359 -174 5 1041 1375 75 5 0 chr11 59835047 59835235 -62008621 + B2_Mm1t SINE B2 1 189 -4 5 1041 2183 212 49 20 chr11 59835235 59835356 -62008500 + MT2A LTR ERVL 360 476 -57 5 1041 225 0 0 0 chr11 59835356 59835381 -62008475 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 5 1041 2183 212 49 20 chr11 59835381 59835410 -62008446 + MT2A LTR ERVL 477 523 -10 5 1041 1354 203 117 19 chr11 59835516 59835892 -62007964 + MTD LTR MaLR 5 417 -2 5 1041 255 158 0 0 chr11 59837171 59837209 -62006647 + B4A SINE B4 175 212 -80 5 1041 480 62 0 0 chr11 59837245 59837309 -62006547 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1041 287 205 143 0 chr11 59837310 59837422 -62006434 + L1M1 LINE L1 5602 5729 -574 5 1041 929 116 0 7 chr11 59838248 59838396 -62005460 + URR1A DNA MER1_type 75 221 -5 5 1041 375 23 0 0 chr11 59838509 59838553 -62005303 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 5 1041 1847 141 75 96 chr11 59840138 59840422 -62003434 - MTB_Mm LTR MaLR 0 407 111 5 1041 1176 7 0 7 chr11 59840422 59840562 -62003294 + B1_Mus2 SINE Alu 1 139 -8 5 1041 1847 141 75 96 chr11 59840562 59840693 -62003163 - MTB_Mm LTR MaLR -297 110 1 5 1041 346 270 20 26 chr11 59840805 59840957 -62002899 + CT-rich Low_complexity Low_complexity 2 152 0 5 1041 220 268 69 11 chr11 59842292 59842379 -62001477 + L2a LINE L2 3076 3167 -259 5 1041 1148 128 11 11 chr11 59842714 59842903 -62000953 - B2_Mm2 SINE B2 -3 192 4 5 1041 1340 79 21 0 chr11 59842914 59843104 -62000752 - B2_Mm2 SINE B2 0 195 2 5 1041 1170 121 6 6 chr11 59843307 59843490 -62000366 - URR1A DNA MER1_type -9 217 35 5 1041 286 320 0 0 chr11 59845898 59845973 -61997883 + ID4 SINE ID 2 76 -7 5 1041 298 307 41 48 chr11 59846083 59846230 -61997626 - MER20 DNA MER1_type -24 195 50 5 1041 425 259 60 49 chr11 59846903 59847086 -61996770 - Tigger7 DNA MER2_type 0 2491 2307 5 1041 677 174 33 46 chr11 59847089 59847240 -61996616 + B1_Mur1 SINE Alu 1 149 0 5 1041 205 294 137 40 chr11 59848447 59848571 -61995285 + L2c LINE L2 3247 3382 -5 5 1041 277 224 17 17 chr11 59851281 59851340 -61992516 + ID4 SINE ID 14 72 -11 5 1041 4492 156 69 33 chr11 59851698 59852179 -61991677 + RMER19B LTR ERVK 2 516 -386 5 1041 1117 75 0 0 chr11 59852179 59852325 -61991531 + B1_Mm SINE Alu 1 146 -1 5 1041 225 0 0 0 chr11 59852325 59852350 -61991506 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1041 4492 156 69 33 chr11 59852350 59852676 -61991180 + RMER19B LTR ERVK 517 841 -61 5 1041 2732 70 36 5 chr11 59852676 59853064 -61990792 - MTB LTR MaLR 0 400 1 5 1041 4492 156 69 33 chr11 59853064 59853111 -61990745 + RMER19B LTR ERVK 842 887 -15 5 1041 6822 108 11 52 chr11 59853121 59853528 -61990328 + Lx LINE L1 5532 5928 -726 5 1041 3741 32 53 0 chr11 59853528 59853996 -61989860 - MT2_Mm LTR ERVL 0 493 1 5 1041 6822 107 9 60 chr11 59853996 59854768 -61989088 + Lx LINE L1 5929 6654 0 5 1041 564 89 0 0 chr11 59854805 59854884 -61988972 + (GGA)n Simple_repeat Simple_repeat 3 81 0 5 1041 990 261 76 3 chr11 59854902 59855190 -61988666 + Lx8 LINE L1 7165 7473 0 5 1041 968 59 15 7 chr11 59855488 59855625 -61988231 + B1_Mm SINE Alu 9 146 -1 5 1041 378 0 0 0 chr11 59855625 59855667 -61988189 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1041 816 40 0 0 chr11 59855668 59855768 -61988088 + (GAA)n Simple_repeat Simple_repeat 2 101 0 5 1041 691 289 56 56 chr11 59855770 59855915 -61987941 + L1MD LINE L1 3342 3496 -2650 5 1041 1013 124 65 43 chr11 59855915 59856100 -61987756 - B2_Mm2 SINE B2 -5 190 2 5 1041 691 291 55 48 chr11 59856100 59856345 -61987511 + L1MD LINE L1 3497 3737 -2406 5 1041 459 350 146 0 chr11 59856658 59856898 -61986958 - MER2 DNA MER2_type 0 345 71 5 1041 833 246 14 19 chr11 59856976 59857183 -61986673 - B4A SINE B4 0 292 87 5 1041 591 255 23 46 chr11 59857178 59857351 -61986505 - B4A SINE B4 -123 169 1 5 1041 265 235 0 81 chr11 59857407 59857481 -61986375 - ID4 SINE ID 0 83 16 5 1041 1615 175 55 19 chr11 59857680 59858041 -61985815 + ORR1D1 LTR MaLR 1 374 0 5 1041 729 186 26 90 chr11 59858089 59858278 -61985578 + B2_Mm2 SINE B2 2 178 -17 5 1041 649 172 8 15 chr11 59860673 59860803 -61983053 + B1_Mus2 SINE Alu 18 146 -1 5 1041 248 77 26 0 chr11 59861283 59861322 -61982534 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 5 1041 1192 48 0 0 chr11 59861322 59861469 -61982387 - B1_Mm SINE Alu 0 147 1 5 1041 203 241 0 17 chr11 59861969 59862028 -61981828 + C-rich Low_complexity Low_complexity 5 62 0 5 1041 223 352 86 23 chr11 59862742 59862870 -61980986 - L3 LINE CR1 -37 4452 4317 5 1041 290 318 169 24 chr11 59863462 59863534 -61980322 + L2a LINE L2 2935 3013 -413 5 1041 1452 135 168 58 chr11 59863534 59863880 -61979976 + ORR1C2 LTR MaLR 1 384 0 5 1041 290 318 169 24 chr11 59863880 59864232 -61979624 + L2a LINE L2 3014 3421 -5 5 1041 457 173 24 106 chr11 59864333 59864456 -61979400 + MT2B LTR ERVL 152 264 -337 5 1041 1006 58 0 0 chr11 59864349 59864479 -61979377 + B1_Mus1 SINE Alu 7 136 -12 6 1041 599 60 0 12 chr11 59864479 59864564 -61979292 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 6 1041 242 293 24 0 chr11 59864591 59864673 -61979183 + MIRb SINE MIR 64 147 -121 6 1041 231 226 76 61 chr11 59864896 59864962 -61978894 - ID SINE ID -135 89 23 6 1041 702 189 30 0 chr11 59865364 59865496 -61978360 + B1_Mur2 SINE Alu 2 137 -12 6 1041 244 267 17 0 chr11 59865498 59865558 -61978298 + G-rich Low_complexity Low_complexity 2 62 0 6 1041 420 319 95 20 chr11 59865579 59865726 -61978130 + RSINE1 SINE B4 8 165 0 6 1041 429 169 0 0 chr11 59865782 59865865 -61977991 + GA-rich Low_complexity Low_complexity 3 85 0 6 1041 451 254 98 15 chr11 59866138 59866270 -61977586 - B1F SINE Alu -1 148 6 6 1041 689 232 108 54 chr11 59866837 59867078 -61976778 + RMER5 LTR ERV1 33 286 -248 6 1041 1590 290 31 19 chr11 59867081 59867594 -61976262 + RMER5 LTR ERV1 1 519 -15 6 1041 550 248 85 98 chr11 59867604 59867828 -61976028 + RMER5 LTR ERV1 287 507 -27 6 1041 4470 70 3 0 chr11 59868097 59868679 -61975177 - MT2B2 LTR ERVL 0 584 1 6 1041 2811 125 127 6 chr11 59869333 59869847 -61974009 + RMER4B LTR ERVK 1 576 -9 6 1041 231 239 0 0 chr11 59870488 59870555 -61973301 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1041 244 224 0 0 chr11 59870971 59871020 -61972836 - MTEa LTR MaLR -14 365 317 6 1041 880 139 7 0 chr11 59871023 59871160 -61972696 + B1_Mus1 SINE Alu 2 139 -9 6 1041 1294 83 10 40 chr11 59871202 59871385 -61972471 + B2_Mm2 SINE B2 2 181 -14 6 1041 312 27 0 0 chr11 59871385 59871422 -61972434 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 6 1041 1294 83 10 40 chr11 59871422 59871438 -61972418 + B2_Mm2 SINE B2 182 195 0 6 1041 662 65 11 0 chr11 59871440 59871532 -61972324 + (GAGAA)n Simple_repeat Simple_repeat 4 96 0 6 1041 245 241 0 0 chr11 59871715 59871769 -61972087 - ORR1E LTR MaLR -255 104 51 6 1041 382 229 0 0 chr11 59871848 59871933 -61971923 + ID2 SINE ID 5 89 -63 6 1041 252 0 0 0 chr11 59873423 59873451 -61970405 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1041 262 211 0 0 chr11 59873621 59873678 -61970178 - B1F2 SINE Alu -90 59 3 6 1041 259 275 33 46 chr11 59873678 59873721 -61970135 - PB1D10 SINE Alu -39 110 60 6 1041 213 39 0 0 chr11 59873721 59873747 -61970109 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 6 1041 259 253 0 74 chr11 59873747 59873808 -61970048 - PB1D10 SINE Alu -58 59 3 6 1041 709 214 0 60 chr11 59873938 59874087 -61969769 + B1_Mur2 SINE Alu 1 140 -9 6 1041 1019 130 31 31 chr11 59874102 59874293 -61969563 + B2_Mm2 SINE B2 5 195 0 6 1041 302 285 122 8 chr11 59874788 59874919 -61968937 + MER20 DNA MER1_type 27 172 -47 6 1041 386 294 71 33 chr11 59875221 59875404 -61968452 + MLT1J2 LTR MaLR 36 225 -223 6 1041 342 318 147 45 chr11 59875416 59875729 -61968127 + ORR1E LTR MaLR 6 350 -9 6 1041 250 272 250 7 chr11 59875753 59875765 -61968091 + CYRA11_Mm Unknown Y-chromosome 159 260 -357 6 1041 641 124 248 0 chr11 59875765 59875894 -61967962 - URR1B DNA MER1_type 0 225 65 6 1041 889 125 14 14 chr11 59876459 59876605 -61967251 - B1_Mus1 SINE Alu 0 148 3 6 1041 1930 160 141 37 chr11 59876623 59877068 -61966788 - RMER19A LTR ERVK -278 459 17 6 1041 283 262 50 0 chr11 59877085 59877165 -61966691 + L1MC LINE L1 2603 2686 -3460 6 1041 613 200 46 0 chr11 59877165 59877295 -61966561 + B1_Mur1 SINE Alu 2 137 -12 6 1041 686 44 11 0 chr11 59877295 59877385 -61966471 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 6 1041 845 134 7 27 chr11 59877396 59877542 -61966314 + B1_Mus1 SINE Alu 6 148 0 6 1041 616 258 72 27 chr11 59877569 59877832 -61966024 + L1MC LINE L1 2676 2950 -3196 6 1041 762 74 0 0 chr11 59877865 59877973 -61965883 + B1_Mus2 SINE Alu 33 140 -7 6 1041 1559 273 94 65 chr11 59878006 59878881 -61964975 + L1MC LINE L1 2986 3885 -2261 6 1041 486 0 0 0 chr11 59878885 59878939 -61964917 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1041 603 246 22 7 chr11 59879048 59879187 -61964669 + RSINE1 SINE B4 4 144 -21 6 1041 213 39 0 0 chr11 59879188 59879214 -61964642 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1041 207 302 0 0 chr11 59879697 59879750 -61964106 + MIRc SINE MIR 101 153 -115 6 1041 1183 42 0 0 chr11 59879848 59879990 -61963866 + B1_Mus1 SINE Alu 2 143 -5 6 1041 223 49 49 0 chr11 59879993 59880034 -61963822 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 6 1041 576 0 0 0 chr11 59880395 59880459 -61963397 + (TTTC)n Simple_repeat Simple_repeat 4 67 0 6 1041 1239 43 9 128 chr11 59881662 59881873 -61961983 + B2_Mm1t SINE B2 1 186 -7 6 1041 182 128 43 0 chr11 59882599 59882646 -61961210 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 6 1041 887 200 40 35 chr11 59883143 59883345 -61960511 + B3 SINE B2 1 203 -13 6 1041 235 260 39 0 chr11 59883841 59883918 -61959938 + ID4 SINE ID 1 80 -3 6 1041 509 228 20 0 chr11 59884189 59884290 -61959566 - B3 SINE B2 0 216 114 6 1041 378 0 0 0 chr11 59885197 59885239 -61958617 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1041 879 198 86 70 chr11 59885336 59885592 -61958264 + RMER1C Other Other 1083 1342 0 6 1041 1632 161 62 164 chr11 59885832 59886194 -61957662 + MT2A LTR ERVL 86 453 -80 6 1041 333 0 0 0 chr11 59886194 59886231 -61957625 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1041 306 0 0 0 chr11 59886231 59886264 -61957592 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1041 1632 161 62 164 chr11 59886264 59886399 -61957457 + MT2A LTR ERVL 454 532 -1 6 1041 1566 157 89 9 chr11 59886661 59886977 -61956879 + MTD LTR MaLR 10 350 -69 6 1041 623 312 98 11 chr11 59887116 59887382 -61956474 - MLT1A1 LTR MaLR 0 408 120 6 1041 251 310 103 0 chr11 59888103 59888219 -61955637 + MLT1D LTR MaLR 309 436 -69 6 1041 1142 54 0 20 chr11 59888545 59888696 -61955160 + B1_Mus1 SINE Alu 1 148 0 6 1041 262 301 42 16 chr11 59888784 59888888 -61954968 + B1F SINE Alu 11 117 0 6 1041 395 240 294 0 chr11 59888910 59889056 -61954800 + ID_B1 SINE B4 34 222 -2 6 1041 343 208 0 89 chr11 59889095 59889174 -61954682 + PB1 SINE Alu 20 91 -36 6 1041 238 325 52 0 chr11 59889183 59889260 -61954596 + ID4_ SINE ID 1 81 -2 6 1041 399 21 0 0 chr11 59889433 59889481 -61954375 + (CTTG)n Simple_repeat Simple_repeat 2 49 0 6 1041 246 105 0 0 chr11 59889486 59889524 -61954332 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 6 1041 606 140 0 0 chr11 59889518 59889618 -61954238 + (TCC)n Simple_repeat Simple_repeat 2 101 0 6 1041 264 167 0 0 chr11 59890038 59890086 -61953770 + GA-rich Low_complexity Low_complexity 6 53 0 6 1041 252 86 0 0 chr11 59890154 59890189 -61953667 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 6 1041 926 114 0 14 chr11 59890190 59890332 -61953524 - B1_Mus2 SINE Alu -2 145 6 6 1041 475 220 82 9 chr11 59890338 59890448 -61953408 - PB1D7 SINE Alu 0 120 3 6 1041 303 28 0 0 chr11 59890549 59890585 -61953271 + (CCA)n Simple_repeat Simple_repeat 3 38 0 6 1041 237 375 0 30 chr11 59891299 59891398 -61952458 - LTR16B LTR ERVL -2 461 366 6 1041 287 267 13 0 chr11 59891406 59891481 -61952375 - MT2B LTR ERVL -363 238 163 6 1041 1071 289 90 12 chr11 59891493 59891916 -61951940 - Lx8 LINE L1 -63 7410 6955 6 1041 827 251 94 65 chr11 59891949 59892049 -61951807 + ORR1D2 LTR MaLR 57 149 -221 6 1041 1388 74 0 21 chr11 59892049 59892243 -61951613 + B2_Mm2 SINE B2 2 191 -4 6 1041 827 254 91 77 chr11 59892243 59892442 -61951414 + ORR1D2 LTR MaLR 150 341 -29 6 1041 1140 101 5 48 chr11 59892442 59892630 -61951226 - B2_Mm2 SINE B2 -15 180 1 6 1041 216 0 0 0 chr11 59892638 59892662 -61951194 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1041 887 174 7 0 chr11 59892668 59892812 -61951044 - B1_Mur4 SINE Alu -5 145 1 6 1041 417 278 67 170 chr11 59892812 59892857 -61950999 + ORR1D2 LTR MaLR 343 384 0 6 1041 2072 284 44 40 chr11 59892857 59893538 -61950318 - Lx8 LINE L1 -514 6959 6276 6 1041 2572 258 47 194 chr11 59893536 59893940 -61949916 - L1_Mur3 LINE L1 -201 5679 5305 6 1041 1169 28 14 0 chr11 59893940 59894085 -61949771 - B1_Mus2 SINE Alu 0 147 1 6 1041 2572 258 47 194 chr11 59894085 59894729 -61949127 - L1_Mur3 LINE L1 -576 5304 4747 6 1041 1121 62 0 20 chr11 59894729 59894877 -61948979 - B1_Mm SINE Alu 0 147 3 6 1041 2572 258 47 194 chr11 59894877 59894982 -61948874 - L1_Mur3 LINE L1 -1134 4746 4667 6 1041 223 203 169 0 chr11 59894982 59895041 -61948815 - B1_Mur1 SINE Alu 0 149 81 6 1041 2572 258 47 194 chr11 59895041 59895372 -61948484 - L1_Mur3 LINE L1 -1134 4666 4411 6 1041 302 267 172 0 chr11 59895372 59895488 -61948368 - B1F2 SINE Alu -13 136 1 6 1041 2572 258 47 194 chr11 59895488 59895729 -61948127 - L1_Mur3 LINE L1 -1470 4410 4177 6 1041 1188 48 0 0 chr11 59895729 59895876 -61947980 + B1_Mus1 SINE Alu 2 148 0 6 1041 2572 258 47 194 chr11 59895876 59896085 -61947771 - L1_Mur3 LINE L1 -1704 4176 3976 6 1041 1234 89 0 22 chr11 59896118 59896279 -61947577 + B2_Mm2 SINE B2 1 160 -35 6 1041 180 0 0 0 chr11 59896279 59896299 -61947557 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1041 1234 89 0 22 chr11 59896299 59896320 -61947536 + B2_Mm2 SINE B2 161 179 -16 6 1041 389 289 8 34 chr11 59897045 59897163 -61946693 - PB1D10 SINE Alu 0 117 3 6 1041 764 174 21 47 chr11 59897536 59897721 -61946135 + B3 SINE B2 1 190 -3 6 1041 490 227 32 56 chr11 59898063 59898189 -61945667 - B1_Mur1 SINE Alu -21 128 6 6 1041 634 206 12 188 chr11 59898210 59898455 -61945401 - B3 SINE B2 -10 206 5 6 1041 689 266 55 38 chr11 59898470 59898724 -61945132 - Lx8 LINE L1 -1602 5871 5604 6 1041 636 183 0 32 chr11 59898942 59899066 -61944790 + ID_B1 SINE B4 86 205 -19 6 1041 216 97 0 0 chr11 59899076 59899107 -61944749 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 6 130 2370 98 3 0 chr11 59899844 59900170 -61943686 - ORR1A2 LTR MaLR 0 327 1 6 1042 216 0 0 0 chr11 59900587 59900611 -61943245 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 6 1042 1657 151 54 194 chr11 59900831 59901372 -61942484 - RMER4A LTR ERVK -1 465 1 6 1042 216 265 55 88 chr11 59902256 59902347 -61941509 - MIRb SINE MIR -133 135 48 6 1042 22 0 0 0 chr11 59902501 59902523 -61941333 + AT_rich Low_complexity Low_complexity 1 22 0 6 1042 29 0 0 0 chr11 59903240 59903269 -61940587 + AT_rich Low_complexity Low_complexity 1 29 0 6 1042 198 91 0 0 chr11 59903304 59903337 -61940519 + (TCTCTG)n Simple_repeat Simple_repeat 6 38 0 7 1042 344 246 83 25 chr11 59904094 59904215 -61939641 + MER3 DNA MER1_type 70 197 -12 7 1042 256 338 78 58 chr11 59904425 59904579 -61939277 + MamGypLTR1a LTR Gypsy 602 758 -26 7 1042 415 213 130 8 chr11 59905230 59905353 -61938503 - U1 snRNA snRNA -24 141 4 7 1042 290 244 85 25 chr11 59905460 59905578 -61938278 - MLT1D LTR MaLR -295 210 86 7 1042 1258 227 91 12 chr11 59905910 59906249 -61937607 - ORR1D1 LTR MaLR -3 371 6 7 1042 237 204 105 114 chr11 59907478 59907583 -61936273 + L2a LINE L2 3269 3372 -54 7 1042 286 277 34 51 chr11 59908997 59909115 -61934741 + MLT1C LTR MaLR 346 461 -6 7 1042 261 276 162 10 chr11 59909230 59909329 -61934527 - PB1D10 SINE Alu -2 115 2 7 1042 385 339 119 20 chr11 59909380 59909675 -61934181 - L2b LINE L2 -64 3323 3000 7 1042 250 260 110 20 chr11 59910291 59910404 -61933452 - PB1D7 SINE Alu 0 127 1 7 1042 302 333 26 26 chr11 59910737 59910854 -61933002 - L3 LINE CR1 -110 4379 4263 7 1042 451 296 9 0 chr11 59911079 59911187 -61932669 + ID_B1 SINE B4 103 211 -13 7 1042 235 0 28 28 chr11 59911187 59911223 -61932633 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 7 1042 960 181 92 11 chr11 59911227 59911411 -61932445 + B3 SINE B2 6 204 -12 7 1042 39 18 0 18 chr11 59911438 59911453 -61932403 + AT_rich Low_complexity Low_complexity 1 15 0 7 1042 679 188 22 0 chr11 59911453 59911591 -61932265 - B1_Mus1 SINE Alu -7 141 1 7 1042 39 18 0 18 chr11 59911591 59911632 -61932224 + AT_rich Low_complexity Low_complexity 1 41 0 7 1042 590 299 76 0 chr11 59911676 59911887 -61931969 + B4A SINE B4 6 232 -60 7 1042 463 209 78 8 chr11 59911905 59912042 -61931814 + B3A SINE B2 2 150 -43 7 1042 375 60 0 0 chr11 59912042 59912092 -61931764 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1042 252 278 119 36 chr11 59912092 59912122 -61931734 + B2_Mm1a SINE B2 151 183 -10 7 1042 248 284 90 0 chr11 59912118 59912185 -61931671 + B4A SINE B4 217 289 -3 7 1042 296 302 251 17 chr11 59912335 59912510 -61931346 + ID_B1 SINE B4 2 217 -7 7 1042 464 252 19 10 chr11 59912535 59912639 -61931217 + B3 SINE B2 3 107 -109 7 1042 523 239 0 22 chr11 59912643 59912827 -61931029 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 7 1042 270 193 0 0 chr11 59912840 59912897 -61930959 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 7 1042 614 263 30 94 chr11 59913173 59913408 -61930448 - MTE2a LTR MaLR -35 344 125 7 1042 474 43 0 42 chr11 59913991 59914050 -61929806 + B1_Mur4 SINE Alu 82 140 -10 7 1042 294 29 0 0 chr11 59914050 59914085 -61929771 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1042 474 43 0 42 chr11 59914085 59914097 -61929759 + B1_Mur4 SINE Alu 141 150 0 7 1042 189 0 0 0 chr11 59914141 59914162 -61929694 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1042 1132 74 0 0 chr11 59914164 59914312 -61929544 - B1_Mus1 SINE Alu 0 148 1 7 1042 641 179 49 0 chr11 59914319 59914442 -61929414 - B1_Mur2 SINE Alu 0 149 21 7 1042 247 306 0 14 chr11 59914780 59914853 -61929003 + ID4 SINE ID 1 72 -11 7 1042 233 276 86 93 chr11 59914853 59914893 -61928963 + ID_B1 SINE B4 1 115 -109 7 1042 372 43 0 0 chr11 59914893 59914939 -61928917 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1042 233 276 86 93 chr11 59914939 59914965 -61928891 + ID_B1 SINE B4 116 139 -85 7 1042 849 135 0 0 chr11 59915020 59915153 -61928703 + B1_Mur4 SINE Alu 17 149 -1 7 1042 360 64 0 0 chr11 59915155 59915202 -61928654 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 7 1042 248 317 0 12 chr11 59915303 59915386 -61928470 + ID4 SINE ID 2 83 0 7 1042 318 106 0 0 chr11 59915402 59915449 -61928407 + (CAA)n Simple_repeat Simple_repeat 1 47 0 7 1042 808 225 75 5 chr11 59915763 59915964 -61927892 + B3 SINE B2 2 216 0 7 1042 792 152 194 68 chr11 59915986 59916177 -61927679 + B3 SINE B2 2 216 0 7 1042 259 313 48 0 chr11 59916276 59916359 -61927497 - PB1 SINE Alu -10 117 31 7 1042 357 281 45 110 chr11 59916454 59916654 -61927202 + MLT1D LTR MaLR 22 208 -297 7 1042 202 26 50 50 chr11 59916667 59916707 -61927149 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1042 291 71 0 0 chr11 59916767 59916809 -61927047 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1042 710 168 7 0 chr11 59916805 59916942 -61926914 + GA-rich Low_complexity Low_complexity 2 139 0 7 1042 1163 47 0 0 chr11 59917619 59917767 -61926089 - B1_Mus1 SINE Alu 0 148 1 7 1042 257 281 221 54 chr11 59917800 59918094 -61925762 + L2a LINE L2 2990 3332 -94 7 1042 21 36 0 0 chr11 59918626 59918654 -61925202 + GC_rich Low_complexity Low_complexity 1 28 0 7 1042 200 167 0 0 chr11 59918702 59918732 -61925124 + (CGG)n Simple_repeat Simple_repeat 2 31 0 7 1042 253 297 8 30 chr11 59918884 59919016 -61924840 + G-rich Low_complexity Low_complexity 6 134 0 7 1042 315 0 0 0 chr11 59920787 59920822 -61923034 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1042 239 272 53 21 chr11 59920926 59921020 -61922836 - Charlie9 DNA MER1_type -2655 102 6 7 1042 255 256 176 11 chr11 59921355 59921446 -61922410 + MIRc SINE MIR 45 150 -118 7 1042 288 0 0 0 chr11 59922511 59922543 -61921313 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1042 207 0 0 0 chr11 59923324 59923347 -61920509 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1042 645 14 0 0 chr11 59924285 59924359 -61919497 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 7 1042 532 0 0 29 chr11 59924368 59924438 -61919418 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 7 1042 521 178 9 0 chr11 59924438 59924545 -61919311 - B3 SINE B2 -18 198 91 7 1042 554 197 48 30 chr11 59924543 59924720 -61919136 - B3A SINE B2 -5 190 1 7 1042 238 333 103 48 chr11 59924776 59924921 -61918935 + MIR SINE MIR 90 242 -20 7 1042 888 148 14 0 chr11 59924925 59925067 -61918789 + B1_Mur4 SINE Alu 1 144 -6 7 1042 252 0 0 0 chr11 59928786 59928814 -61915042 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 7 1042 302 302 0 72 chr11 59929535 59929660 -61914196 + PB1D10 SINE Alu 2 117 0 7 1042 291 239 66 33 chr11 59929742 59929833 -61914023 + PB1D10 SINE Alu 18 111 -6 7 1042 336 218 307 0 chr11 59929840 59929941 -61913915 + RSINE1 SINE B4 3 134 -31 7 1042 304 260 27 0 chr11 59930074 59930147 -61913709 - L1ME4a LINE L1 -1 6123 6049 7 1042 488 126 46 0 chr11 59930319 59930406 -61913450 + B2_Mm2 SINE B2 3 93 -102 7 1042 553 161 94 24 chr11 59930344 59930471 -61913385 - 7SLRNA srpRNA srpRNA -94 220 85 7 1042 194 0 39 0 chr11 59930651 59930677 -61913179 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1042 1226 34 0 0 chr11 59930679 59930825 -61913031 - B1_Mm SINE Alu 0 147 2 7 1042 189 0 0 0 chr11 59931429 59931450 -61912406 + (C)n Simple_repeat Simple_repeat 1 21 0 7 1042 414 258 19 18 chr11 59931744 59931858 -61911998 - PB1D10 SINE Alu -2 115 5 7 1042 319 315 0 0 chr11 59931885 59931977 -61911879 - PB1D10 SINE Alu 0 117 26 7 1042 959 153 39 57 chr11 59931980 59932209 -61911647 - URR1B DNA MER1_type 0 225 1 7 1042 288 0 0 0 chr11 59932254 59932286 -61911570 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1042 1104 279 113 69 chr11 59932289 59932817 -61911039 + MT2B LTR ERVL 8 561 -40 7 1042 450 0 0 0 chr11 59932817 59932867 -61910989 + (TCTCC)n Simple_repeat Simple_repeat 2 51 0 7 1042 1104 279 113 69 chr11 59932867 59932905 -61910951 + MT2B LTR ERVL 562 599 -2 7 1042 181 246 131 0 chr11 59933486 59933547 -61910309 - MIR3 SINE MIR -29 179 111 7 1042 540 0 0 0 chr11 59934593 59934653 -61909203 + (CACAG)n Simple_repeat Simple_repeat 2 61 0 7 1042 680 204 22 14 chr11 59934923 59935062 -61908794 - B1F SINE Alu 0 149 10 7 1042 781 181 7 7 chr11 59935305 59935444 -61908412 + B1_Mus1 SINE Alu 10 148 0 7 1042 579 207 17 33 chr11 59935457 59935577 -61908279 + RSINE1 SINE B4 12 129 -36 7 1042 206 105 26 0 chr11 59935622 59935660 -61908196 + (CACCC)n Simple_repeat Simple_repeat 5 43 0 7 1042 311 336 102 0 chr11 59936312 59936440 -61907416 + L3 LINE CR1 3408 3548 -941 7 1042 242 308 0 93 chr11 59937212 59937298 -61906558 - RSINE1 SINE B4 0 165 88 7 1042 1089 69 14 0 chr11 59937324 59937469 -61906387 - B1_Mm SINE Alu 0 147 1 7 1042 501 149 26 24 chr11 59938276 59938393 -61905463 - PB1D9 SINE Alu -19 130 13 7 1042 1042 58 14 0 chr11 59938442 59938581 -61905275 - B1_Mus1 SINE Alu -6 142 2 7 1042 788 308 22 0 chr11 59938582 59938806 -61905050 - B4A SINE B4 -63 229 1 7 1042 622 318 42 97 chr11 59938809 59939210 -61904646 - MTE2b LTR MaLR 0 379 1 7 1042 273 225 101 0 chr11 59939215 59939304 -61904552 - B1F SINE Alu -51 98 1 7 1042 262 293 114 0 chr11 59939304 59939373 -61904483 - ID SINE ID -140 84 2 7 1042 833 188 0 20 chr11 59939394 59939546 -61904310 - B1_Mur2 SINE Alu 0 149 1 7 1042 326 235 24 24 chr11 59939555 59939638 -61904218 - PB1D10 SINE Alu -4 113 31 7 1042 545 200 86 9 chr11 59941152 59941268 -61902588 + B1_Mur1 SINE Alu 12 136 -13 7 1042 423 56 0 0 chr11 59941273 59941327 -61902529 + (CAAA)n Simple_repeat Simple_repeat 1 54 0 7 1042 242 311 53 0 chr11 59942607 59942739 -61901117 - L2b LINE L2 -301 3074 2936 7 1042 522 117 74 46 chr11 59942845 59942953 -61900903 + PB1D9 SINE Alu 1 111 -9 7 1042 971 285 105 11 chr11 59943014 59943365 -61900491 + Lx8 LINE L1 7057 7440 -33 7 1042 268 262 61 45 chr11 59944190 59944322 -61899534 - L3 LINE CR1 -111 4378 4245 7 1042 1312 113 16 5 chr11 59945022 59945209 -61898647 - B2_Mm2 SINE B2 -5 190 2 7 1042 476 245 20 0 chr11 59945440 59945538 -61898318 - RSINE1 SINE B4 -62 103 4 8 1042 315 300 40 0 chr11 59945791 59945891 -61897965 - PB1D10 SINE Alu -1 116 13 8 1042 227 311 78 0 chr11 59945812 59945902 -61897954 - ID_B1 SINE B4 -48 176 80 8 1042 322 234 171 0 chr11 59946303 59946399 -61897457 - B1F1 SINE Alu 0 120 7 8 1042 186 43 0 0 chr11 59946792 59946815 -61897041 + (CAGCC)n Simple_repeat Simple_repeat 1 23 0 8 1042 203 269 15 15 chr11 59947034 59947102 -61896754 + GA-rich Low_complexity Low_complexity 1 68 0 8 1042 301 333 53 58 chr11 59948587 59948794 -61895062 + L2 LINE L2 2737 2942 -477 8 1042 602 202 106 5 chr11 59949318 59949481 -61894375 - B3 SINE B2 -23 172 2 8 1042 216 167 48 0 chr11 59950703 59950745 -61893111 - L2b LINE L2 -291 3084 3041 8 1042 1185 193 19 5 chr11 59950865 59951078 -61892778 + B3 SINE B2 1 216 0 8 1042 593 257 16 98 chr11 59951080 59951274 -61892582 - B3 SINE B2 -10 206 29 8 1042 393 213 127 18 chr11 59951780 59951890 -61891966 - ID_B1 SINE B4 0 224 103 8 1042 227 298 0 0 chr11 59951854 59951911 -61891945 - B1F2 SINE Alu -92 57 1 8 1042 223 254 0 27 chr11 59952218 59952291 -61891565 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 8 1042 294 50 0 0 chr11 59952642 59952682 -61891174 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1042 210 261 29 0 chr11 59953364 59953433 -61890423 + CT-rich Low_complexity Low_complexity 1 71 0 8 1042 240 163 0 0 chr11 59954099 59954142 -61889714 + T-rich Low_complexity Low_complexity 1 43 0 8 1042 227 178 0 0 chr11 59954483 59954528 -61889328 + C-rich Low_complexity Low_complexity 1 45 0 8 1042 277 257 37 65 chr11 59956721 59956829 -61887027 - MIR3 SINE MIR -26 182 78 8 1042 205 170 0 60 chr11 59957384 59957434 -61886422 + GA-rich Low_complexity Low_complexity 2 48 0 8 1042 296 193 133 22 chr11 59957852 59957942 -61885914 - PB1D10 SINE Alu -1 148 48 8 1042 190 279 0 0 chr11 59961148 59961191 -61882665 - MIR SINE MIR -113 149 107 8 1042 569 227 27 0 chr11 59962004 59962114 -61881742 + PB1D9 SINE Alu 2 114 -6 8 1042 232 289 13 33 chr11 59962407 59962508 -61881348 - MIRb SINE MIR -103 165 70 8 1042 1140 137 49 0 chr11 59964007 59964212 -61879644 - URR1A DNA MER1_type 0 226 12 8 1042 1638 16 10 16 chr11 59964936 59965130 -61878726 - B2_Mm1t SINE B2 0 193 1 8 1042 862 186 0 7 chr11 59966237 59966378 -61877478 + B1_Mur1 SINE Alu 5 144 -5 8 1042 1151 56 28 0 chr11 59966786 59966928 -61876928 + B1_Mus2 SINE Alu 2 147 0 8 1042 186 71 0 0 chr11 59966934 59966962 -61876894 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1042 411 273 10 0 chr11 59970188 59970287 -61873569 - RSINE1 SINE B4 -63 102 3 8 1042 962 102 6 98 chr11 59970766 59970929 -61872927 + B1_Mur4 SINE Alu 2 149 -1 8 1042 540 246 27 34 chr11 59971531 59971678 -61872178 - RSINE1 SINE B4 -12 153 8 8 1042 324 291 9 9 chr11 59972211 59972322 -61871534 - Charlie19a DNA Charlie -64 322 212 8 1042 215 237 86 93 chr11 59973111 59973139 -61870717 - ID_B1 SINE B4 -122 170 132 8 1042 223 182 23 0 chr11 59973139 59973183 -61870673 - B1_Mus2 SINE Alu -101 46 2 8 1042 215 237 86 93 chr11 59973183 59973272 -61870584 - ID_B1 SINE B4 -122 131 2 8 1042 348 266 108 39 chr11 59973272 59973381 -61870475 - B4A SINE B4 -174 118 1 8 1042 692 276 81 0 chr11 59975875 59976060 -61867796 + B4A SINE B4 79 278 -14 8 1042 284 262 0 134 chr11 59976640 59976737 -61867119 + B1F2 SINE Alu 12 95 -54 8 1042 217 347 80 0 chr11 59977859 59977934 -61865922 + ID4_ SINE ID 2 82 -1 8 1042 231 36 0 0 chr11 59978978 59979006 -61864850 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1042 1624 26 10 5 chr11 59979035 59979227 -61864629 - B2_Mm1a SINE B2 0 193 1 8 1042 220 289 78 13 chr11 59979287 59979364 -61864492 + ID4 SINE ID 1 82 -1 8 1042 212 355 75 11 chr11 59979364 59979381 -61864475 + ID_B1 SINE B4 1 100 -124 8 1042 254 356 50 8 chr11 59980051 59980170 -61863686 + Tigger14a DNA MER2_type 196 319 -5 8 1042 296 361 23 0 chr11 59984652 59984785 -61859071 + (TGGG)n Simple_repeat Simple_repeat 3 138 0 8 1042 213 39 0 0 chr11 59985086 59985112 -61858744 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1042 223 341 24 12 chr11 59985478 59985561 -61858295 - MIRc SINE MIR -118 150 67 8 1042 282 294 116 16 chr11 59986838 59986959 -61856897 - MIR SINE MIR -80 182 50 8 1042 383 299 50 28 chr11 59988368 59988547 -61855309 + CYRA11_Mm Unknown Y-chromosome 158 340 -277 8 1042 973 154 40 0 chr11 59988387 59988562 -61855294 - URR1B DNA MER1_type -7 218 37 8 1042 21 0 0 0 chr11 59989413 59989434 -61854422 + GC_rich Low_complexity Low_complexity 1 21 0 8 1042 369 0 0 0 chr11 59992606 59992647 -61851209 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1042 215 268 99 0 chr11 59992647 59992713 -61851143 - RSINE1 SINE B4 -42 123 51 8 1042 240 302 0 16 chr11 59993082 59993146 -61850710 - L2b LINE L2 -50 3325 3263 8 1042 240 100 100 0 chr11 59993316 59993366 -61850490 - MIR SINE MIR -85 123 69 8 1042 308 278 19 76 chr11 59994047 59994063 -61849793 - PB1 SINE Alu -28 99 84 8 1042 361 275 0 12 chr11 59994063 59994144 -61849712 - ID4_ SINE ID -1 82 3 8 1042 308 278 19 76 chr11 59994144 59994232 -61849624 - PB1 SINE Alu -44 83 1 8 1042 357 296 70 90 chr11 59994232 59994304 -61849552 - ID SINE ID -147 77 9 8 1042 255 31 0 0 chr11 59994463 59994495 -61849361 + (CCA)n Simple_repeat Simple_repeat 1 32 0 8 1042 440 248 37 37 chr11 59994772 59994906 -61848950 - B4A SINE B4 -158 134 1 8 1042 302 250 53 0 chr11 59995325 59995401 -61848455 + ID2 SINE ID 2 81 -2 8 1042 211 200 0 0 chr11 59995660 59995695 -61848161 + (CACG)n Simple_repeat Simple_repeat 4 38 0 8 1042 243 0 0 0 chr11 59996685 59996712 -61847144 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1042 198 150 0 0 chr11 60003401 60003441 -61840415 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 1042 558 191 401 0 chr11 60005366 60005518 -61838338 + B3 SINE B2 4 216 0 2 1042 677 271 39 6 chr11 60008409 60008572 -61835284 - MTE2a LTR MaLR -5 374 206 3 1042 676 174 16 8 chr11 60008572 60008694 -61835162 + B1_Mur1 SINE Alu 1 123 -26 4 1042 531 267 64 41 chr11 60008697 60008869 -61834987 + B3A SINE B2 11 186 -9 5 1042 294 230 95 0 chr11 60008867 60008941 -61834915 + B1_Mur4 SINE Alu 68 148 -2 6 1042 390 187 8 144 chr11 60008983 60009020 -61834836 - MTE2a LTR MaLR -269 110 85 3 1042 1007 233 9 32 chr11 60009020 60009237 -61834619 + B3 SINE B2 1 212 -4 7 1042 390 187 8 144 chr11 60009237 60009324 -61834532 - MTE2a LTR MaLR -295 84 3 3 1042 250 87 21 21 chr11 60012473 60012520 -61831336 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1042 1440 199 122 12 chr11 60018249 60018585 -61825271 + ORR1D1 LTR MaLR 2 374 0 9 1042 915 168 0 20 chr11 60021199 60021351 -61822505 + B1_Mur1 SINE Alu 1 149 0 1 1042 231 258 68 41 chr11 60023090 60023262 -61820594 + MIRm SINE MIR 5 192 -76 1 1042 280 232 122 44 chr11 60027282 60027372 -61816484 + B4A SINE B4 1 97 -195 1 1042 286 324 41 54 chr11 60027426 60027573 -61816283 + B4A SINE B4 86 230 -62 1 1042 1048 181 48 5 chr11 60027574 60027780 -61816076 + B3 SINE B2 2 216 0 1 1042 305 212 294 0 chr11 60027784 60027869 -61815987 - B1_Mus1 SINE Alu -29 119 10 1 1042 22 35 0 0 chr11 60027878 60027907 -61815949 + AT_rich Low_complexity Low_complexity 1 29 0 1 1042 826 38 0 0 chr11 60027907 60028013 -61815843 + B1_Mus1 SINE Alu 30 135 -13 1 1042 225 0 0 0 chr11 60028013 60028038 -61815818 + (CAAAC)n Simple_repeat Simple_repeat 1 25 0 1 1042 296 256 15 15 chr11 60028044 60028175 -61815681 + (TA)n Simple_repeat Simple_repeat 2 132 0 1 1042 414 0 0 0 chr11 60028326 60028372 -61815484 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1042 644 207 14 22 chr11 60028672 60028684 -61815172 - ID_B1 SINE B4 0 224 213 2 1042 1269 47 0 0 chr11 60028684 60028832 -61815024 - B1_Mus1 SINE Alu 0 148 1 2 1042 644 219 27 19 chr11 60028832 60028994 -61814862 - ID_B1 SINE B4 -12 212 50 2 130 1547 94 87 40 chr11 60030869 60031145 -61812711 + MTC LTR MaLR 1 289 -132 2 1043 1765 173 53 16 chr11 60031469 60031792 -61812064 + ORR1C1 LTR MaLR 44 378 0 2 1043 251 286 168 0 chr11 60031792 60031904 -61811952 + RMER15 LTR ERVL 444 575 0 2 1043 188 339 117 17 chr11 60032494 60032614 -61811242 + MIR SINE MIR 59 190 -72 2 1043 753 96 19 9 chr11 60032846 60032951 -61810905 - PB1D9 SINE Alu -13 107 2 2 1043 953 170 0 0 chr11 60034806 60034953 -61808903 + B1_Mus2 SINE Alu 1 147 0 2 1043 249 196 0 0 chr11 60034955 60035006 -61808850 + A-rich Low_complexity Low_complexity 3 53 0 2 1043 210 116 44 44 chr11 60035742 60035787 -61808069 + GA-rich Low_complexity Low_complexity 2 46 0 2 1043 216 0 0 0 chr11 60036083 60036107 -61807749 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1043 344 289 52 17 chr11 60036108 60036224 -61807632 - MIR SINE MIR -63 199 80 3 1043 246 309 185 31 chr11 60037977 60038204 -61805652 + MLT1K LTR MaLR 319 580 -15 3 1043 435 138 144 31 chr11 60039804 60039901 -61803955 + PB1D9 SINE Alu 12 119 -1 3 1043 688 276 31 10 chr11 60039925 60040119 -61803737 + B3A SINE B2 1 198 0 3 1043 21 0 0 0 chr11 60040129 60040150 -61803706 + AT_rich Low_complexity Low_complexity 1 21 0 3 1043 540 309 45 16 chr11 60045274 60045461 -61798395 - ID_B1 SINE B4 -37 255 68 3 1043 27 0 0 0 chr11 60047667 60047694 -61796162 + AT_rich Low_complexity Low_complexity 1 27 0 3 1043 1566 58 0 5 chr11 60048553 60048745 -61795111 + B2_Mm2 SINE B2 3 193 -2 3 1043 699 142 67 0 chr11 60048765 60048885 -61794971 + B1_Mur2 SINE Alu 21 148 -1 3 1043 241 328 58 33 chr11 60048898 60049018 -61794838 + ID_B1 SINE B4 2 124 -100 4 1043 813 244 11 37 chr11 60050209 60050396 -61793460 - B3A SINE B2 -15 183 2 4 1043 229 308 65 87 chr11 60050481 60050666 -61793190 + YREP_Mm Unknown Unknown 116 296 -1516 4 1043 443 265 111 0 chr11 60050564 60050681 -61793175 - B1F1 SINE Alu -14 135 6 4 1043 334 171 0 47 chr11 60052859 60052945 -61790911 + CT-rich Low_complexity Low_complexity 3 84 0 4 1043 590 128 20 0 chr11 60052933 60053035 -61790821 + (TTTC)n Simple_repeat Simple_repeat 1 104 0 4 1043 902 125 11 33 chr11 60053024 60053206 -61790650 + CT-rich Low_complexity Low_complexity 3 180 0 4 1043 1365 74 63 0 chr11 60053539 60053714 -61790142 + B2_Mm2 SINE B2 2 187 -8 4 1043 600 286 32 0 chr11 60053743 60053897 -61789959 - RSINE1 SINE B4 -4 161 3 4 1043 234 270 63 63 chr11 60056439 60056518 -61787338 - RSINE1 SINE B4 -85 80 2 4 1043 627 186 0 21 chr11 60056952 60057079 -61786777 + B1F SINE Alu 8 122 -27 5 1043 610 327 24 59 chr11 60057079 60057248 -61786608 + RSINE1 SINE B4 3 165 0 5 1043 30 27 0 0 chr11 60057249 60057286 -61786570 + AT_rich Low_complexity Low_complexity 1 37 0 5 1043 1146 219 55 112 chr11 60057752 60058153 -61785703 + MTE2a LTR MaLR 1 378 -1 5 1043 315 0 0 0 chr11 60058498 60058533 -61785323 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 5 1043 252 86 0 0 chr11 60060321 60060356 -61783500 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1043 792 204 15 0 chr11 60060362 60060499 -61783357 + B1_Mur4 SINE Alu 2 140 -10 5 1043 209 33 0 32 chr11 60060499 60060530 -61783326 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1043 1034 239 76 21 chr11 60061015 60061306 -61782550 + Lx6 LINE L1 7090 7396 -64 5 1043 356 241 0 37 chr11 60061364 60061446 -61782410 + PB1D10 SINE Alu 5 83 -34 5 1043 378 0 0 0 chr11 60061450 60061492 -61782364 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1043 564 176 0 0 chr11 60062780 60062911 -61780945 + (CA)n Simple_repeat Simple_repeat 1 131 0 6 1043 1242 48 14 0 chr11 60063223 60063369 -61780487 + B1_Mus1 SINE Alu 1 148 0 6 1043 1540 139 15 8 chr11 60063419 60063680 -61780176 - RMER4A LTR ERVK -171 295 33 6 1043 1257 118 16 0 chr11 60063675 60063862 -61779994 - B2_Mm2 SINE B2 -5 190 1 6 1043 296 93 0 0 chr11 60063862 60063905 -61779951 - RMER4A LTR ERVK -423 43 1 6 1043 872 235 40 10 chr11 60063958 60064156 -61779700 - B3 SINE B2 -11 205 2 6 1043 278 261 125 97 chr11 60066000 60066046 -61777810 + MT2B LTR ERVL 110 159 -442 6 1043 651 167 85 31 chr11 60066046 60066176 -61777680 + B1_Mur2 SINE Alu 2 138 -11 6 1043 261 0 0 0 chr11 60066176 60066205 -61777651 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1043 385 230 27 0 chr11 60066214 60066288 -61777568 + B3 SINE B2 1 76 -140 6 1043 203 211 19 0 chr11 60066341 60066393 -61777463 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1043 288 349 62 27 chr11 60066693 60066805 -61777051 + PB1D10 SINE Alu 2 117 0 7 1043 609 254 52 0 chr11 60067451 60067585 -61776271 + B3 SINE B2 71 211 -5 6 1043 756 246 32 34 chr11 60067597 60067808 -61776048 + B3A SINE B2 9 216 0 7 1043 553 217 72 0 chr11 60068639 60068777 -61775079 + B1_Mur2 SINE Alu 2 149 0 7 1043 206 289 19 0 chr11 60068979 60069031 -61774825 + L3 LINE CR1 4250 4302 -187 7 1043 245 274 11 0 chr11 60070315 60070410 -61773446 + (CA)n Simple_repeat Simple_repeat 1 96 0 7 1043 269 310 28 15 chr11 60070820 60070931 -61772925 + L2c LINE L2 3231 3330 -45 7 1043 971 196 11 11 chr11 60071971 60072134 -61771722 + B2_Mm2 SINE B2 2 162 -33 7 1043 225 0 0 0 chr11 60072134 60072159 -61771697 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 1043 971 196 11 11 chr11 60072159 60072181 -61771675 + B2_Mm2 SINE B2 163 186 -9 7 1043 227 282 58 23 chr11 60072722 60072809 -61771047 + MIR3 SINE MIR 88 177 -31 7 1043 1301 20 0 13 chr11 60073552 60073706 -61770150 + B2_Mm2 SINE B2 3 154 -41 8 1043 302 22 0 62 chr11 60073707 60073755 -61770101 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 8 1043 579 149 0 0 chr11 60073765 60073872 -61769984 + (GGA)n Simple_repeat Simple_repeat 3 109 0 8 1043 232 174 0 42 chr11 60074863 60074911 -61768945 + CT-rich Low_complexity Low_complexity 1 46 0 8 1043 397 225 14 0 chr11 60075626 60075697 -61768159 + ID4_ SINE ID 2 73 -10 8 1043 246 196 20 0 chr11 60077663 60077714 -61766142 + tRNA-Ala-GCY_ tRNA tRNA 14 65 -10 8 1043 21 0 0 0 chr11 60077716 60077737 -61766119 + AT_rich Low_complexity Low_complexity 1 21 0 8 1043 226 309 0 18 chr11 60079924 60079980 -61763876 - ID SINE ID -151 73 19 8 1043 503 193 193 0 chr11 60080743 60080862 -61762994 - ID_B1 SINE B4 -2 222 81 8 1043 330 310 210 7 chr11 60080885 60081171 -61762685 - MER2 DNA MER2_type -1 344 1 8 1043 185 253 107 12 chr11 60081597 60081681 -61762175 - MIR SINE MIR -61 147 56 9 1043 243 0 0 0 chr11 60082807 60082834 -61761022 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1043 1061 62 0 0 chr11 60082835 60082963 -61760893 - B1_Mus2 SINE Alu -19 128 1 9 1043 337 301 147 52 chr11 60083059 60083291 -61760565 + MLT1F1 LTR MaLR 262 601 -23 9 1043 234 296 130 0 chr11 60084580 60084713 -61759143 + MIR SINE MIR 58 216 -52 9 1043 358 238 12 0 chr11 60085256 60085336 -61758520 - ID4_ SINE ID 0 83 3 9 1043 867 202 191 0 chr11 60085715 60085893 -61757963 - B3 SINE B2 0 216 5 9 1043 694 75 440 0 chr11 60085939 60086073 -61757783 - B2_Mm2 SINE B2 -1 194 2 9 1043 1325 122 0 5 chr11 60086104 60086294 -61757562 + B2_Mm2 SINE B2 1 189 -6 9 1043 214 280 104 26 chr11 60086365 60086378 -61757478 - MamSINE1 SINE tRNA -206 84 5 9 1043 344 82 131 0 chr11 60086378 60086439 -61757417 - B2_Mm2 SINE B2 -125 70 2 1 1043 189 280 118 27 chr11 60086687 60086797 -61757059 + MIRm SINE MIR 16 135 -141 1 1043 257 310 119 17 chr11 60086996 60087114 -61756742 + Tigger15a DNA TcMar 44 173 -542 1 1043 222 37 0 0 chr11 60087489 60087516 -61756340 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1043 321 219 171 32 chr11 60088579 60088702 -61755154 + L1MC LINE L1 5688 5827 -2055 1 1043 720 292 110 82 chr11 60088751 60089099 -61754757 + L1M2 LINE L1 3859 4242 -1898 1 1043 587 167 0 38 chr11 60089099 60089205 -61754651 + B1_Mur4 SINE Alu 32 133 -17 1 1043 720 292 110 82 chr11 60089205 60089673 -61754183 + L1M2 LINE L1 4243 4762 -1378 1 1043 484 188 82 20 chr11 60089734 60089832 -61754024 - PB1D9 SINE Alu 0 120 17 1 1043 231 306 44 140 chr11 60090644 60090959 -61752897 + L2c LINE L2 3003 3287 -100 1 1043 777 213 20 0 chr11 60091044 60091194 -61752662 + ID_B1 SINE B4 52 204 -20 1 1043 414 0 0 0 chr11 60091205 60091251 -61752605 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1043 206 312 98 24 chr11 60091251 60091333 -61752523 - L2a LINE L2 -30 3396 3309 1 1043 872 109 14 0 chr11 60091546 60091684 -61752172 + (GGGA)n Simple_repeat Simple_repeat 1 140 0 1 1043 720 313 97 29 chr11 60092464 60092806 -61751050 + L2b LINE L2 2499 2863 -556 1 1043 258 360 52 20 chr11 60092815 60092968 -61750888 + L2b LINE L2 3200 3357 -18 1 1043 317 93 0 122 chr11 60094253 60094351 -61749505 + C-rich Low_complexity Low_complexity 4 89 0 1 1043 874 148 176 0 chr11 60094656 60094832 -61749024 + B3 SINE B2 3 209 -7 1 1043 422 281 82 21 chr11 60094839 60095072 -61748784 + L1MB3 LINE L1 4916 5162 -978 1 1043 303 191 104 9 chr11 60095161 60095267 -61748589 + L1MB3 LINE L1 5178 5293 -847 1 1043 1430 66 33 0 chr11 60095310 60095491 -61748365 + B2_Mm2 SINE B2 2 188 -7 1 1043 25 51 0 0 chr11 60095735 60095774 -61748082 + AT_rich Low_complexity Low_complexity 1 39 0 1 1043 330 342 13 0 chr11 60095915 60095994 -61747862 + ID4_ SINE ID 2 81 -2 1 1043 3248 48 5 34 chr11 60096056 60096464 -61747392 + MTA_Mm LTR MaLR 1 396 0 1 1043 1215 176 5 37 chr11 60096487 60096705 -61747151 - B3 SINE B2 0 216 6 1 1043 336 182 65 43 chr11 60096706 60096798 -61747058 + L1MB3 LINE L1 5465 5558 -631 1 1043 213 200 22 0 chr11 60096798 60096843 -61747013 + B4 SINE B4 2 47 -245 1 1043 962 251 161 4 chr11 60096852 60097352 -61746504 + L1MB3 LINE L1 5543 6141 -42 1 1043 917 135 15 0 chr11 60097353 60097486 -61746370 + B1_Mus1 SINE Alu 1 135 -13 1 1043 194 0 39 0 chr11 60097486 60097512 -61746344 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1043 1887 167 92 3 chr11 60097552 60097901 -61745955 + ORR1C2 LTR MaLR 1 380 -4 1 1043 573 271 76 38 chr11 60097891 60098075 -61745781 + B3A SINE B2 19 195 0 1 1043 215 268 18 0 chr11 60098205 60098261 -61745595 + L2c LINE L2 3272 3328 -59 1 1043 185 171 0 54 chr11 60098854 60098891 -61744965 + MER5A DNA MER1_type 22 56 -133 1 1043 248 320 82 0 chr11 60098988 60099085 -61744771 - MER5B DNA MER1_type -71 107 3 1 1043 1496 208 161 22 chr11 60102073 60102419 -61741437 - MTD LTR MaLR 0 419 26 1 1043 1764 241 31 70 chr11 60102629 60102946 -61740910 - L1M4 LINE L1 -715 5463 5162 1 1043 346 295 35 18 chr11 60102946 60103060 -61740796 - PB1D10 SINE Alu 0 117 2 1 1043 1764 289 47 70 chr11 60103060 60103655 -61740201 - L1M4 LINE L1 -985 5161 4552 1 1043 815 149 200 33 chr11 60103655 60103835 -61740021 - B3 SINE B2 -2 214 5 1 1043 1764 289 47 70 chr11 60103835 60103934 -61739922 - L1M4 LINE L1 -1595 4551 4468 1 1043 348 24 0 0 chr11 60104298 60104339 -61739517 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1043 186 103 0 0 chr11 60104684 60104713 -61739143 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1043 309 228 280 11 chr11 60104844 60104937 -61738919 + RSINE1 SINE B4 14 131 -34 1 1043 38 0 0 0 chr11 60104941 60104979 -61738877 + AT_rich Low_complexity Low_complexity 1 38 0 1 1043 1173 55 14 0 chr11 60105148 60105294 -61738562 + B1_Mus1 SINE Alu 1 148 0 1 1043 390 252 9 9 chr11 60105525 60105641 -61738215 - L1M4 LINE L1 -1950 4190 4075 1 1043 528 226 29 0 chr11 60105985 60106087 -61737769 + PB1D10 SINE Alu 2 106 -11 1 1043 21 57 0 0 chr11 60106658 60106693 -61737163 + AT_rich Low_complexity Low_complexity 1 35 0 1 1043 239 258 32 0 chr11 60106929 60106991 -61736865 - ID4 SINE ID -16 67 4 1 1043 1496 73 16 0 chr11 60107072 60107264 -61736592 - B2_Mm2 SINE B2 0 195 1 1 1043 535 285 92 4 chr11 60107550 60107800 -61736056 - L1MD3 LINE L1 0 7995 7724 1 1043 693 87 6 84 chr11 60109572 60110093 -61733763 + (TG)n Simple_repeat Simple_repeat 1 480 0 1 1043 222 278 19 0 chr11 60110201 60110255 -61733601 - ID SINE ID -155 69 15 1 1043 22 35 0 0 chr11 60110947 60110976 -61732880 + AT_rich Low_complexity Low_complexity 1 29 0 1 1043 1239 68 0 0 chr11 60111038 60111185 -61732671 + B1_Mm SINE Alu 1 147 0 1 1043 24 0 0 0 chr11 60111185 60111209 -61732647 + AT_rich Low_complexity Low_complexity 1 24 0 1 1043 2417 157 37 12 chr11 60111334 60111740 -61732116 + MTC LTR MaLR 6 421 0 1 1043 783 303 123 3 chr11 60111740 60111850 -61732006 + L1MB3 LINE L1 5704 5817 -366 1 1043 386 278 18 9 chr11 60111850 60111959 -61731897 + PB1D10 SINE Alu 1 110 -7 1 1043 783 303 123 3 chr11 60111959 60112239 -61731617 + L1MB3 LINE L1 5818 6140 -43 1 1043 610 272 19 45 chr11 60112239 60112393 -61731463 + B3A SINE B2 2 151 -47 1 1043 281 159 23 0 chr11 60112399 60112443 -61731413 - PB1D9 SINE Alu -75 45 1 1 1043 279 299 140 48 chr11 60112484 60112670 -61731186 + L1MB8 LINE L1 5975 6177 -1 1 1043 662 186 68 20 chr11 60112720 60112868 -61730988 + B3 SINE B2 60 214 -2 1 1043 1166 62 7 0 chr11 60113183 60113328 -61730528 + B1_Mm SINE Alu 2 147 0 1 1043 280 59 19 19 chr11 60113330 60113382 -61730474 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 1 1043 276 185 0 0 chr11 60113506 60113560 -61730296 + A-rich Low_complexity Low_complexity 1 54 0 1 1043 308 291 35 43 chr11 60114650 60114765 -61729091 + L1MC5 LINE L1 7822 7935 -26 1 1043 750 308 65 75 chr11 60115881 60116282 -61727574 + RLTR26 LTR ERVK 1 415 -227 1 1043 530 188 20 30 chr11 60117508 60117607 -61726249 - B1_Mur1 SINE Alu 0 149 52 1 1043 302 226 59 109 chr11 60117650 60117663 -61726193 + MT2B LTR ERVL 152 158 -443 1 1043 758 132 50 0 chr11 60117663 60117784 -61726072 + B1_Mus2 SINE Alu 1 127 -20 1 1043 22 0 0 0 chr11 60117787 60117809 -61726047 + AT_rich Low_complexity Low_complexity 1 22 0 1 1043 235 286 16 0 chr11 60118270 60118333 -61725523 + ID4_ SINE ID 8 71 -12 1 1043 196 258 42 70 chr11 60118367 60118438 -61725418 + MIRc SINE MIR 90 158 -110 1 1043 353 342 8 16 chr11 60118452 60118574 -61725282 - MER5A DNA MER1_type -1 188 68 1 1043 367 250 83 37 chr11 60118655 60118763 -61725093 - MLT1J LTR MaLR -2 510 398 1 1043 274 281 163 39 chr11 60118850 60119028 -61724828 - MLT1J LTR MaLR -258 254 55 1 1043 889 209 121 62 chr11 60119043 60119267 -61724589 + MTD LTR MaLR 24 260 -159 1 1043 210 241 0 100 chr11 60119406 60119466 -61724390 + MER5A DNA MER1_type 136 189 0 1 1043 1040 201 49 5 chr11 60120020 60120225 -61723631 - B3 SINE B2 0 216 3 1 1043 845 212 23 12 chr11 60120437 60120609 -61723247 - B3 SINE B2 0 216 43 1 1043 966 235 53 14 chr11 60121136 60121343 -61722513 + B3 SINE B2 1 215 -1 1 1043 283 304 12 12 chr11 60122541 60122621 -61721235 + PB1D10 SINE Alu 35 114 -3 1 1043 386 150 300 0 chr11 60122673 60122753 -61721103 + PB1D10 SINE Alu 1 104 -13 1 1043 250 340 12 60 chr11 60122778 60122944 -61720912 + L1M5 LINE L1 5606 5763 -361 1 1043 798 239 150 26 chr11 60123312 60123578 -61720278 + Lx8 LINE L1 6996 7294 -179 1 1043 588 154 0 0 chr11 60123659 60123763 -61720093 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1043 244 173 94 19 chr11 60123845 60123898 -61719958 + B1_Mur2 SINE Alu 88 144 -5 1 1043 690 133 141 0 chr11 60123908 60124036 -61719820 + B1_Mur4 SINE Alu 3 148 -2 1 1043 181 282 103 21 chr11 60125098 60125243 -61718613 + L3 LINE CR1 4259 4415 -74 1 1043 239 257 45 22 chr11 60125712 60125836 -61718020 - MIR SINE MIR -60 202 82 1 1043 542 131 10 0 chr11 60125836 60125935 -61717921 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1043 2005 158 45 19 chr11 60126700 60127074 -61716782 + ORR1C2 LTR MaLR 1 384 0 1 1043 257 264 41 110 chr11 60127076 60127221 -61716635 + L1MC5 LINE L1 7168 7302 -659 1 1043 521 221 142 0 chr11 60127230 60127357 -61716499 + ID_B1 SINE B4 80 224 0 1 1043 370 245 27 73 chr11 60127368 60127478 -61716378 + L1MC5 LINE L1 7315 7419 -542 1 1043 319 221 134 21 chr11 60127504 60127601 -61716255 + RSINE1 SINE B4 21 128 -37 1 1043 278 162 14 0 chr11 60127665 60127739 -61716117 + GA-rich Low_complexity Low_complexity 2 76 0 1 1043 339 266 64 14 chr11 60127743 60127884 -61715972 + L1MC5 LINE L1 7407 7554 -407 1 1043 752 213 7 0 chr11 60128002 60128143 -61715713 + B1_Mur3 SINE Alu 1 142 -7 1 1043 667 228 147 24 chr11 60128173 60128367 -61715489 - B3A SINE B2 -2 214 6 1 1043 335 232 72 0 chr11 60128437 60128506 -61715350 + ID4 SINE ID 8 81 -2 1 1043 953 124 21 0 chr11 60128676 60128821 -61715035 + B1_Mus1 SINE Alu 1 148 0 1 1043 222 37 0 0 chr11 60129147 60129174 -61714682 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 1043 809 262 68 0 chr11 60129199 60129390 -61714466 + B3 SINE B2 7 210 -6 1 1043 297 306 46 43 chr11 60129422 60129660 -61714196 - MIR SINE MIR -8 260 14 1 1043 426 365 15 35 chr11 60131068 60131267 -61712589 + MIRb SINE MIR 18 212 -56 1 1043 351 317 12 94 chr11 60131620 60131780 -61712076 - MTEa LTR MaLR -1 378 232 1 1043 414 196 144 0 chr11 60131802 60131899 -61711957 - MTEa LTR MaLR -211 168 58 1 1043 304 178 11 43 chr11 60132690 60132784 -61711072 + Lx4B LINE L1 6964 7054 -4 1 1043 305 192 12 131 chr11 60132784 60132868 -61710988 + L1MEg LINE L1 1871 1944 -4140 1 1043 804 217 154 0 chr11 60132887 60133062 -61710794 + B3 SINE B2 15 216 0 2 1043 359 235 46 93 chr11 60134876 60134984 -61708872 + B1F SINE Alu 47 149 0 2 1043 613 251 22 25 chr11 60135257 60135440 -61708416 - L1MB7 LINE L1 -145 6039 5854 2 1043 233 29 29 0 chr11 60135443 60135477 -61708379 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 2 1043 467 252 58 0 chr11 60135478 60135581 -61708275 - PB1D9 SINE Alu -11 109 1 2 1043 341 325 0 0 chr11 60135660 60135743 -61708113 + ID4_ SINE ID 1 83 0 2 1043 966 151 0 0 chr11 60136155 60136296 -61707560 + B1_Mur4 SINE Alu 1 141 -9 2 1043 194 0 39 0 chr11 60136296 60136322 -61707534 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1043 369 261 53 21 chr11 60136458 60136552 -61707304 + MLT1B LTR MaLR 287 383 -7 2 1043 282 73 0 0 chr11 60136578 60136619 -61707237 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1043 779 260 5 27 chr11 60136626 60136812 -61707044 - B3A SINE B2 -16 182 1 2 1043 814 245 31 31 chr11 60136841 60137064 -61706792 - ID_B1 SINE B4 -1 223 1 2 1043 292 211 1 0 chr11 60137064 60137122 -61706734 - MIRb SINE MIR -100 168 106 2 1043 1037 239 10 10 chr11 60137308 60137515 -61706341 - B3 SINE B2 -8 208 2 2 1043 430 262 141 37 chr11 60137617 60137752 -61706104 + B1F SINE Alu 1 149 0 2 1043 809 256 55 143 chr11 60137758 60137850 -61706006 + B4A SINE B4 4 82 -210 2 1043 1453 63 5 16 chr11 60137850 60138044 -61705812 + B2_Mm1t SINE B2 2 193 0 2 1043 809 256 55 143 chr11 60138044 60138060 -61705796 + B4A SINE B4 83 95 -197 2 1043 1234 49 0 0 chr11 60138060 60138203 -61705653 + B1_Mus2 SINE Alu 1 143 -4 2 1043 783 0 0 0 chr11 60138203 60138290 -61705566 + (GAA)n Simple_repeat Simple_repeat 2 88 0 2 1043 809 256 55 143 chr11 60138290 60138452 -61705404 + B4A SINE B4 96 251 -41 2 1043 2074 145 77 16 chr11 60138494 60138872 -61704984 + MTD LTR MaLR 11 411 -8 2 1043 1233 40 0 13 chr11 60138968 60139118 -61704738 - B1_Mus1 SINE Alu 0 148 1 2 1043 1624 47 0 0 chr11 60139394 60139586 -61704270 - B2_Mm1t SINE B2 0 193 2 2 1043 272 278 0 65 chr11 60140424 60140501 -61703355 - B3A SINE B2 0 198 127 2 1043 480 284 58 36 chr11 60140440 60140579 -61703277 - RSINE1 SINE B4 0 165 24 2 1043 25 0 0 0 chr11 60140666 60140691 -61703165 + AT_rich Low_complexity Low_complexity 1 25 0 2 1043 470 269 61 88 chr11 60140691 60140838 -61703018 + B4 SINE B4 81 223 -69 2 1043 864 135 38 0 chr11 60140707 60140840 -61703016 + B1_Mur1 SINE Alu 12 149 0 2 1043 1016 242 5 5 chr11 60142014 60142226 -61701630 - B3 SINE B2 -4 212 1 2 1043 3239 56 5 2 chr11 60142602 60142997 -61700859 + MTA_Mm LTR MaLR 1 396 0 2 1043 216 86 0 0 chr11 60143748 60143783 -61700073 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1043 629 227 32 7 chr11 60144434 60144589 -61699267 + L1MB3 LINE L1 5448 5606 -565 2 1043 613 123 216 24 chr11 60144598 60144723 -61699133 + B1_Mur1 SINE Alu 1 149 0 2 1043 532 94 0 96 chr11 60145294 60145388 -61698468 + B2_Mm2 SINE B2 72 156 -39 2 1043 992 284 45 12 chr11 60145391 60145513 -61698343 + L1MB3 LINE L1 5707 5827 -356 2 1043 736 178 30 0 chr11 60145513 60145648 -61698208 + B1_Mur1 SINE Alu 5 143 -6 2 1043 992 284 45 12 chr11 60145648 60145856 -61698000 + L1MB3 LINE L1 5828 6048 -135 2 1043 1203 68 0 0 chr11 60145893 60146040 -61697816 - B1_Mus2 SINE Alu 0 147 1 2 1043 357 194 7 151 chr11 60146056 60146208 -61697648 + L1MB3 LINE L1 6049 6178 -2 2 1043 319 329 128 60 chr11 60147864 60148113 -61695743 + L1ME2 LINE L1 5872 6137 -27 2 1043 252 257 26 17 chr11 60148192 60148307 -61695549 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1043 285 29 0 0 chr11 60148386 60148420 -61695436 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1043 1266 41 0 0 chr11 60148422 60148569 -61695287 - B1_Mus1 SINE Alu 0 148 2 2 1043 1317 104 5 5 chr11 60148774 60148958 -61694898 + B2_Mm2 SINE B2 1 184 -11 2 1043 186 43 0 0 chr11 60148958 60148981 -61694875 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 1043 1424 85 16 0 chr11 60148982 60149170 -61694686 + B2_Mm2 SINE B2 5 195 0 2 1043 1028 332 121 37 chr11 60149526 60149613 -61694243 + MER21B LTR ERV1 12 97 -766 2 1043 862 154 21 7 chr11 60149613 60149757 -61694099 - B1_Mus2 SINE Alu 0 147 2 2 1043 1028 332 121 37 chr11 60149757 60150341 -61693515 + MER21B LTR ERV1 98 738 -125 2 1043 847 185 152 0 chr11 60150516 60150700 -61693156 + B3 SINE B2 1 212 -4 2 1043 281 155 17 0 chr11 60150705 60150763 -61693093 + GA-rich Low_complexity Low_complexity 2 60 0 2 1043 341 214 81 35 chr11 60151062 60151149 -61692707 + B1F SINE Alu 49 139 -10 2 1043 941 92 0 8 chr11 60151242 60151374 -61692482 + B1_Mus2 SINE Alu 1 131 -16 2 1043 1071 230 222 72 chr11 60151717 60151846 -61692010 + RMER4B LTR ERVK 1 151 -434 2 1043 348 83 0 0 chr11 60151846 60151894 -61691962 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1043 1071 230 222 72 chr11 60151894 60152265 -61691591 + RMER4B LTR ERVK 152 576 -9 2 1043 516 223 48 24 chr11 60152386 60152510 -61691346 + B1F SINE Alu 1 127 -22 2 1043 1222 133 11 0 chr11 60152510 60152698 -61691158 - B2_Mm2 SINE B2 -4 191 2 2 1043 300 53 0 0 chr11 60152708 60152746 -61691110 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1043 1216 62 0 0 chr11 60152746 60152892 -61690964 - B1_Mm SINE Alu 0 147 2 2 1043 381 273 16 32 chr11 60153061 60153186 -61690670 + PB1 SINE Alu 2 124 -3 2 1043 1122 88 0 0 chr11 60153189 60153336 -61690520 + B1_Mus2 SINE Alu 1 147 0 2 1043 411 200 53 0 chr11 60153458 60153533 -61690323 + ID4 SINE ID 2 80 -3 2 1043 499 275 57 14 chr11 60153716 60153856 -61690000 + B4A SINE B4 85 230 -62 2 1043 488 284 8 25 chr11 60153857 60153976 -61689880 + RSINE1 SINE B4 3 119 -46 2 1043 239 0 0 31 chr11 60153982 60154014 -61689842 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 2 1043 1219 68 0 0 chr11 60154014 60154162 -61689694 - B1_Mus1 SINE Alu 0 148 1 2 1043 314 254 0 0 chr11 60154250 60154313 -61689543 + B4A SINE B4 218 280 -12 2 1043 387 0 0 0 chr11 60154335 60154378 -61689478 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1043 297 0 0 0 chr11 60154504 60154537 -61689319 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1043 243 189 36 36 chr11 60154623 60154678 -61689178 - B4 SINE B4 -214 78 24 2 1043 314 311 95 15 chr11 60154680 60154817 -61689039 + Lx8 LINE L1 7076 7223 -250 2 1043 300 296 0 0 chr11 60154808 60154889 -61688967 + Lx8 LINE L1 7154 7234 -239 2 1043 695 223 31 0 chr11 60155132 60155262 -61688594 + B1_Mur1 SINE Alu 2 135 -14 2 1043 1578 249 163 69 chr11 60155382 60155715 -61688141 + L1MB3 LINE L1 5092 5459 -724 2 1043 207 0 0 0 chr11 60155715 60155738 -61688118 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1043 1578 244 118 103 chr11 60155738 60155751 -61688105 + L1MB3 LINE L1 5460 5460 -723 2 1043 207 0 0 0 chr11 60155751 60155774 -61688082 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 2 1043 1578 244 118 103 chr11 60155774 60155941 -61687915 + L1MB3 LINE L1 5460 5597 -586 2 1043 247 266 24 37 chr11 60155941 60156023 -61687833 + ID4 SINE ID 1 81 -2 2 1043 1578 244 118 103 chr11 60156023 60156495 -61687361 + L1MB3 LINE L1 5598 6139 -44 2 1043 321 336 148 0 chr11 60156522 60156644 -61687212 + B4 SINE B4 48 187 -105 2 1043 466 202 24 0 chr11 60156568 60156652 -61687204 + PB1D9 SINE Alu 21 106 -14 2 1043 198 0 0 0 chr11 60156652 60156674 -61687182 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 2 1043 258 32 0 0 chr11 60157882 60157913 -61685943 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1043 203 0 0 36 chr11 60157913 60157941 -61685915 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1043 653 205 12 69 chr11 60158156 60158329 -61685527 + RSINE1 SINE B4 3 165 0 2 1043 905 254 11 0 chr11 60158433 60158618 -61685238 + B3 SINE B2 1 187 -29 2 1043 315 71 0 0 chr11 60158648 60158690 -61685166 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1043 210 254 0 0 chr11 60159013 60159072 -61684784 + T-rich Low_complexity Low_complexity 1 59 0 2 1043 247 378 71 19 chr11 60159450 60159604 -61684252 + MIR SINE MIR 30 191 -71 2 1043 185 159 0 22 chr11 60159621 60159666 -61684190 + T-rich Low_complexity Low_complexity 2 45 0 2 1043 1183 55 7 0 chr11 60159675 60159821 -61684035 - B1_Mus2 SINE Alu 0 147 1 2 1043 211 254 307 8 chr11 60160124 60160251 -61683605 + MER5A DNA MER1_type 1 165 -24 2 1043 1138 102 0 0 chr11 60161481 60161628 -61682228 + B1_Mus1 SINE Alu 2 148 0 2 1043 21 0 0 0 chr11 60161628 60161649 -61682207 + AT_rich Low_complexity Low_complexity 1 21 0 2 1043 252 278 130 30 chr11 60161852 60161952 -61681904 + MIRc SINE MIR 47 156 -112 2 130 525 288 115 0 chr11 60162022 60162213 -61681643 - B3 SINE B2 -2 214 2 2 1044 920 239 24 24 chr11 60162256 60162462 -61681394 - B3 SINE B2 -10 206 1 2 1044 551 258 32 0 chr11 60162553 60162677 -61681179 - ID_B1 SINE B4 -6 218 91 2 1044 244 295 12 25 chr11 60162610 60162690 -61681166 - MT2B LTR ERVL -363 238 160 2 1044 698 251 91 13 chr11 60162879 60163072 -61680784 - B3 SINE B2 0 216 15 2 1044 1068 156 0 26 chr11 60163072 60163263 -61680593 + B2_Mm2 SINE B2 2 187 -8 2 1044 636 253 34 93 chr11 60163263 60163275 -61680581 - B3A SINE B2 -184 14 3 2 1044 839 189 15 59 chr11 60163843 60164045 -61679811 + B3A SINE B2 1 193 -5 2 1044 1188 170 39 0 chr11 60164064 60164270 -61679586 + B3 SINE B2 1 214 -2 2 1044 269 250 25 12 chr11 60164272 60164353 -61679503 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2 1044 1116 83 7 0 chr11 60164475 60164620 -61679236 + B1_Mus2 SINE Alu 2 147 0 2 1044 556 285 69 54 chr11 60164884 60165088 -61678768 - B3 SINE B2 -9 207 1 2 1044 284 293 12 62 chr11 60165187 60165267 -61678589 - ID4 SINE ID -5 78 3 2 1044 233 297 15 15 chr11 60167291 60167356 -61676500 + MIR SINE MIR 34 98 -110 2 1044 232 322 56 33 chr11 60167390 60167480 -61676376 + MIRc SINE MIR 111 202 -66 3 1044 207 0 0 0 chr11 60168696 60168719 -61675137 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1044 583 191 94 16 chr11 60168719 60168847 -61675009 - B1_Mur1 SINE Alu -11 138 1 3 1044 333 160 0 0 chr11 60169252 60169301 -61674555 + A-rich Low_complexity Low_complexity 1 49 0 3 1044 1153 75 7 7 chr11 60169301 60169449 -61674407 + B1_Mus1 SINE Alu 1 148 0 3 1044 333 160 0 0 chr11 60169449 60169474 -61674382 + A-rich Low_complexity Low_complexity 50 74 0 3 1044 189 0 0 0 chr11 60169759 60169780 -61674076 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1044 212 201 50 43 chr11 60170091 60170231 -61673625 + (CAGT)n Simple_repeat Simple_repeat 2 142 0 3 1044 318 328 26 0 chr11 60170332 60170448 -61673408 - RMER15 LTR ERVL -34 541 423 3 1044 766 169 0 98 chr11 60170604 60170768 -61673088 - B1_Mur2 SINE Alu -1 148 1 3 1044 189 263 62 50 chr11 60172804 60172884 -61670972 + MIRb SINE MIR 126 206 -62 3 1044 318 245 31 106 chr11 60172885 60173045 -61670811 + ID_B1 SINE B4 29 176 -48 3 1044 478 180 33 11 chr11 60172975 60173065 -61670791 + PB1D9 SINE Alu 27 118 -2 3 1044 1215 199 14 0 chr11 60173081 60173292 -61670564 + B3 SINE B2 3 216 0 3 1044 307 323 142 45 chr11 60173708 60174087 -61669769 - L2a LINE L2 -27 3399 2984 3 1044 239 319 194 5 chr11 60174144 60174330 -61669526 - L2a LINE L2 -534 2885 2665 3 1044 289 265 0 56 chr11 60174907 60174979 -61668877 - ID4_ SINE ID -11 72 5 3 1044 670 245 57 0 chr11 60174982 60175141 -61668715 - B3 SINE B2 -48 168 1 3 1044 303 264 62 22 chr11 60175167 60175277 -61668579 - PB1D10 SINE Alu -3 117 1 3 1044 337 197 91 0 chr11 60175430 60175496 -61668360 - B1_Mur2 SINE Alu -43 106 35 3 1044 423 138 32 0 chr11 60175482 60175576 -61668280 + MT2A LTR ERVL 392 488 -45 3 1044 215 0 67 0 chr11 60175709 60175739 -61668117 + (TATG)n Simple_repeat Simple_repeat 1 32 0 3 1044 676 253 214 0 chr11 60175774 60175952 -61667904 + B3 SINE B2 1 216 0 3 1044 332 291 24 140 chr11 60176315 60176479 -61667377 + MT2B LTR ERVL 133 277 -324 3 1044 803 201 0 7 chr11 60176352 60176492 -61667364 + B1_Mur2 SINE Alu 6 144 -5 3 1044 281 312 201 24 chr11 60177669 60177833 -61666023 - MIRb SINE MIR -69 199 7 3 1044 270 207 38 76 chr11 60179276 60179390 -61664466 + MIRc SINE MIR 78 181 -87 3 1044 525 71 0 0 chr11 60179425 60179495 -61664361 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1044 236 211 70 0 chr11 60179542 60179599 -61664257 - B1F2 SINE Alu -73 76 16 3 1044 233 143 30 164 chr11 60179711 60179778 -61664078 + PB1D9 SINE Alu 1 58 -62 3 1044 292 299 10 30 chr11 60180114 60180214 -61663642 - LTR16E1 LTR ERVL -20 518 421 3 1044 201 301 138 11 chr11 60180642 60180736 -61663120 - L3 LINE CR1 -3515 974 869 3 1044 487 271 81 17 chr11 60181026 60181199 -61662657 + MIR SINE MIR 67 250 -12 3 1044 272 70 0 23 chr11 60181259 60181303 -61662553 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 3 1044 1146 36 0 0 chr11 60181304 60181441 -61662415 - B1_Mm SINE Alu 0 147 11 3 1044 492 197 22 109 chr11 60181339 60181476 -61662380 - MT2B LTR ERVL -337 264 140 3 1044 315 75 0 0 chr11 60181441 60181481 -61662375 - B1_Mus2 SINE Alu -107 40 1 3 1044 924 170 7 0 chr11 60181488 60181635 -61662221 - B1_Mus1 SINE Alu 0 148 1 3 1044 216 254 0 0 chr11 60181638 60181693 -61662163 + T-rich Low_complexity Low_complexity 2 56 0 3 1044 241 236 18 18 chr11 60182738 60182794 -61661062 - L1MC LINE L1 -2227 5655 5600 3 1044 255 61 0 0 chr11 60182832 60182865 -61660991 + (CACCC)n Simple_repeat Simple_repeat 4 36 0 3 1044 274 288 141 36 chr11 60182972 60183192 -61660664 + L2 LINE L2 2803 3045 -374 3 1044 895 98 157 0 chr11 60183233 60183386 -61660470 - MTD LTR MaLR 0 419 243 3 1044 247 346 93 22 chr11 60183635 60183774 -61660082 - MIRb SINE MIR -36 232 84 3 1044 447 263 62 17 chr11 60184873 60184890 -61658966 - PB1D10 SINE Alu -21 128 60 3 1044 472 241 46 0 chr11 60184890 60184977 -61658879 - ID_B1 SINE B4 -35 189 99 3 1044 447 263 62 17 chr11 60184977 60184989 -61658867 - PB1D10 SINE Alu -21 59 1 3 1044 1520 33 5 32 chr11 60184995 60185185 -61658671 - B2_Mm2 SINE B2 -9 186 2 3 1044 391 297 125 0 chr11 60185210 60185338 -61658518 + B1F1 SINE Alu 5 148 -1 3 1044 443 175 0 20 chr11 60185448 60185547 -61658309 - RCHARR1 DNA MER1_type -82 892 796 3 1044 869 194 22 54 chr11 60185626 60185849 -61658007 + B3 SINE B2 1 216 0 3 1044 1309 27 0 0 chr11 60185859 60186006 -61657850 + B1_Mus2 SINE Alu 1 147 0 3 1044 273 20 39 39 chr11 60186006 60186057 -61657799 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 3 1044 439 218 0 13 chr11 60186108 60186187 -61657669 + RSINE1 SINE B4 54 131 -34 3 1044 342 0 0 0 chr11 60186192 60186230 -61657626 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1044 714 210 16 0 chr11 60186296 60186420 -61657436 + B1_Mur1 SINE Alu 21 146 -3 3 1044 686 209 34 11 chr11 60186407 60186586 -61657270 - RCHARR1 DNA MER1_type -225 749 567 3 1044 331 317 66 73 chr11 60186587 60186723 -61657133 + RSINE1 SINE B4 2 136 -29 3 1044 414 0 0 0 chr11 60186736 60186782 -61657074 + (TAA)n Simple_repeat Simple_repeat 3 48 0 3 1044 963 180 51 55 chr11 60186799 60186874 -61656982 - RCHARR1 DNA MER1_type -411 563 499 3 1044 1156 88 0 0 chr11 60186874 60187021 -61656835 - B1_Mus1 SINE Alu 0 148 2 3 1044 963 180 51 55 chr11 60187021 60187198 -61656658 - RCHARR1 DNA MER1_type -476 498 312 3 1044 747 285 95 5 chr11 60187665 60187827 -61656029 - RCHARR1 DNA MER1_type -730 244 63 3 1044 315 0 0 0 chr11 60187827 60187862 -61655994 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1044 747 285 95 5 chr11 60187862 60187921 -61655935 - RCHARR1 DNA MER1_type -912 62 4 3 1044 248 262 37 12 chr11 60187997 60188078 -61655778 + ID4 SINE ID 1 83 0 3 1044 270 0 0 0 chr11 60188168 60188198 -61655658 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1044 235 177 74 28 chr11 60189428 60189516 -61654340 + MIR SINE MIR 42 134 -74 3 1044 189 0 0 0 chr11 60190636 60190657 -61653199 + (TTTTTG)n Simple_repeat Simple_repeat 1 21 0 3 1044 587 193 8 73 chr11 60190657 60190780 -61653076 - PB1D9 SINE Alu 0 120 6 3 1044 291 235 171 17 chr11 60190815 60190932 -61652924 - MIR3 SINE MIR -61 147 13 3 1044 673 137 142 24 chr11 60192112 60192239 -61651617 - B1_Mur4 SINE Alu -1 149 8 3 1044 364 291 36 80 chr11 60192281 60192393 -61651463 - PB1 SINE Alu 0 127 11 3 1044 231 355 88 92 chr11 60192287 60192504 -61651352 - ID_B1 SINE B4 -7 217 2 3 1044 527 241 0 8 chr11 60192603 60192720 -61651136 + PB1D10 SINE Alu 2 117 0 3 1044 235 105 17 17 chr11 60192738 60192796 -61651060 + (TTTG)n Simple_repeat Simple_repeat 1 58 0 3 1044 1258 41 0 0 chr11 60192796 60192942 -61650914 - B1_Mm SINE Alu -1 146 1 3 1044 1235 55 0 0 chr11 60192951 60193097 -61650759 - B1_Mus1 SINE Alu 0 148 3 3 1044 783 227 0 0 chr11 60193106 60193238 -61650618 + B1_Mur2 SINE Alu 11 142 -7 3 1044 341 295 13 92 chr11 60193114 60193267 -61650589 + B4A SINE B4 104 244 -48 3 1044 617 213 36 7 chr11 60193820 60193957 -61649899 + B1F SINE Alu 1 141 -8 3 1044 341 245 126 10 chr11 60194738 60194841 -61649015 - PB1 SINE Alu -10 117 3 3 1044 246 292 11 22 chr11 60194870 60194961 -61648895 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1044 567 261 12 64 chr11 60194963 60195135 -61648721 - RSINE1 SINE B4 0 165 3 3 1044 397 247 60 115 chr11 60195216 60195399 -61648457 + B4 SINE B4 2 174 -118 3 1044 381 43 0 0 chr11 60195520 60195567 -61648289 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1044 261 0 0 0 chr11 60195567 60195595 -61648261 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1044 1277 112 0 11 chr11 60195940 60196121 -61647735 + B2_Mm2 SINE B2 3 181 -14 3 1044 389 20 0 20 chr11 60196121 60196172 -61647684 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 3 1044 231 246 45 15 chr11 60196204 60196270 -61647586 + MER5B DNA MER1_type 109 176 -2 3 1044 754 209 27 13 chr11 60196455 60196605 -61647251 + ID_B1 SINE B4 72 223 -1 3 1044 296 311 35 78 chr11 60196971 60196988 -61646868 - ID_B1 SINE B4 -30 194 85 3 1044 326 294 0 61 chr11 60196988 60197086 -61646770 - B1F1 SINE Alu -54 95 4 3 1044 351 0 0 0 chr11 60197095 60197134 -61646722 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1044 1133 207 20 0 chr11 60197135 60197338 -61646518 - B3 SINE B2 -8 208 2 3 1044 529 340 51 5 chr11 60197338 60197554 -61646302 - MER34 LTR ERV1 -284 258 33 3 1044 353 291 127 0 chr11 60197965 60198075 -61645781 + B4 SINE B4 118 241 -51 3 1044 243 146 0 0 chr11 60198181 60198222 -61645634 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1044 345 181 139 0 chr11 60198267 60198339 -61645517 + ID2 SINE ID 1 82 -1 3 1044 387 0 0 0 chr11 60199115 60199158 -61644698 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1044 215 278 91 50 chr11 60199403 60199524 -61644332 - MIRb SINE MIR -36 232 107 3 1044 657 203 8 39 chr11 60199693 60199821 -61644035 + RSINE1 SINE B4 1 124 -41 3 1044 384 22 0 0 chr11 60199821 60199866 -61643990 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1044 261 0 0 0 chr11 60199866 60199894 -61643962 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1044 209 33 33 0 chr11 60199907 60199937 -61643919 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1044 1218 41 0 20 chr11 60199937 60200087 -61643769 + B1_Mus1 SINE Alu 2 148 0 3 1044 225 83 32 48 chr11 60200088 60200151 -61643705 + A-rich Low_complexity Low_complexity 3 64 0 3 1044 999 246 10 10 chr11 60200187 60200392 -61643464 + B3 SINE B2 9 213 -3 4 1044 1288 20 0 0 chr11 60200547 60200693 -61643163 + B1_Mus2 SINE Alu 2 147 0 4 1044 288 0 0 0 chr11 60200693 60200725 -61643131 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1044 343 189 68 0 chr11 60200980 60201054 -61642802 + ID4_ SINE ID 4 82 -1 4 1044 210 313 60 0 chr11 60200984 60201067 -61642789 + B4A SINE B4 10 97 -195 4 1044 185 179 175 18 chr11 60201806 60201863 -61641993 - L2c LINE L2 -290 3097 3032 4 1044 2496 134 38 5 chr11 60203277 60203673 -61640183 - MTC LTR MaLR -12 409 1 4 1044 218 333 128 49 chr11 60203676 60203941 -61639915 + L2a LINE L2 3055 3340 -47 4 1044 221 315 43 33 chr11 60203991 60204083 -61639773 - MIRm SINE MIR -10 266 174 4 1044 1252 54 0 0 chr11 60205231 60205379 -61638477 + B1_Mus1 SINE Alu 1 148 0 4 1044 379 256 153 24 chr11 60208421 60208545 -61635311 - RMER15 LTR ERVL -14 561 422 4 1044 771 276 75 72 chr11 60208639 60209014 -61634842 - Lx8 LINE L1 -323 7150 6775 4 1044 2125 140 9 0 chr11 60209027 60209342 -61634514 + ORR1A3 LTR MaLR 1 318 -8 4 1044 370 214 209 93 chr11 60209331 60209460 -61634396 + ID_B1 SINE B4 79 222 -2 4 1044 837 271 81 19 chr11 60209540 60209639 -61634217 - RMER15-int LTR ERVL -281 4718 4615 4 1044 3464 20 10 0 chr11 60209639 60210031 -61633825 + MTA_Mm LTR MaLR 1 396 0 4 1044 837 246 288 11 chr11 60210031 60210382 -61633474 - RMER15-int LTR ERVL -385 4614 4165 4 1044 922 106 34 27 chr11 60210440 60210586 -61633270 - B1_Mur1 SINE Alu 0 149 3 4 1044 629 260 58 39 chr11 60210612 60210820 -61633036 - RMER15-int LTR ERVL -2452 2547 2336 4 1044 336 229 82 9 chr11 60210850 60210960 -61632896 - RMER15-int LTR ERVL -2775 2224 2107 4 1044 1087 227 82 54 chr11 60211415 60211731 -61632125 - MT2B LTR ERVL 0 601 277 4 1044 610 125 10 0 chr11 60211823 60211919 -61631937 + B1_Mus2 SINE Alu 51 147 0 4 1044 818 214 128 0 chr11 60211960 60212147 -61631709 + B3 SINE B2 2 212 -4 4 1044 303 297 69 122 chr11 60212160 60212180 -61631676 + B4A SINE B4 67 140 -152 4 1044 458 263 49 70 chr11 60212180 60212323 -61631533 + B1F SINE Alu 1 140 -9 4 1044 303 297 69 122 chr11 60212323 60212348 -61631508 + B4A SINE B4 141 244 -48 4 1044 185 94 0 30 chr11 60212350 60212383 -61631473 + (GGA)n Simple_repeat Simple_repeat 3 34 0 4 1044 348 156 143 0 chr11 60212767 60212844 -61631012 - RMER15-int LTR ERVL -4099 900 813 4 1044 451 353 91 45 chr11 60213013 60213366 -61630490 - RMER15-int LTR ERVL -4547 452 84 4 1044 261 250 114 0 chr11 60213444 60213532 -61630324 - RMER15 LTR ERVL -44 531 434 4 1044 281 356 103 0 chr11 60213541 60213715 -61630141 - Lx8 LINE L1 -249 7224 7033 4 1044 24 0 0 0 chr11 60213805 60213829 -61630027 + AT_rich Low_complexity Low_complexity 1 24 0 4 1044 1414 80 37 0 chr11 60213855 60214042 -61629814 - B2_Mm2 SINE B2 0 195 2 4 1044 1463 75 16 0 chr11 60214130 60214317 -61629539 - B2_Mm2 SINE B2 -4 191 2 4 1044 810 290 115 19 chr11 60216053 60216313 -61627543 + B4A SINE B4 2 286 -6 4 1044 233 175 35 0 chr11 60216418 60216455 -61627401 + A-rich Low_complexity Low_complexity 3 40 0 4 1044 546 269 57 0 chr11 60216455 60216596 -61627260 + B1F2 SINE Alu 1 149 0 4 1044 233 175 35 0 chr11 60216596 60216615 -61627241 + A-rich Low_complexity Low_complexity 41 60 0 4 1044 651 299 0 0 chr11 60216615 60216759 -61627097 + ID_B1 SINE B4 81 224 0 4 1044 186 258 16 31 chr11 60217016 60217080 -61626776 + MIR SINE MIR 121 183 -79 4 1044 318 227 0 74 chr11 60217143 60217224 -61626632 - ID4_ SINE ID -6 77 3 4 1044 265 322 90 58 chr11 60217600 60217755 -61626101 + MLT1K LTR MaLR 121 280 -315 4 1044 493 248 26 34 chr11 60218117 60218234 -61625622 + PB1D10 SINE Alu 2 117 0 4 1044 200 320 82 0 chr11 60218706 60218803 -61625053 - MIRb SINE MIR -47 221 117 4 1044 1404 55 33 6 chr11 60218917 60219100 -61624756 - B2_Mm2 SINE B2 -5 190 3 4 1044 184 290 126 21 chr11 60219600 60219695 -61624161 + MER5A DNA MER1_type 84 188 -1 4 1044 190 156 0 0 chr11 60221179 60221211 -61622645 - MIR SINE MIR -72 136 105 4 1044 1402 78 15 25 chr11 60221778 60221975 -61621881 + B2_Mm2 SINE B2 1 195 0 4 1044 800 193 7 27 chr11 60222055 60222204 -61621652 + B1_Mur3 SINE Alu 4 149 0 4 1044 815 260 71 0 chr11 60222219 60222415 -61621441 + ID_B1 SINE B4 8 217 -7 4 1044 182 308 65 21 chr11 60222532 60222625 -61621231 - L2 LINE L2 -345 3074 2978 4 1044 180 317 30 45 chr11 60223577 60223643 -61620213 - L2a LINE L2 -57 3369 3305 4 1044 1883 165 69 11 chr11 60223760 60224109 -61619747 + ORR1C2 LTR MaLR 16 384 0 4 1044 1538 42 21 0 chr11 60224944 60225135 -61618721 + B2_Mm2 SINE B2 1 195 0 4 1044 689 266 127 24 chr11 60225172 60225369 -61618487 + B4A SINE B4 15 230 -62 4 1044 550 294 18 24 chr11 60225369 60225533 -61618323 + RSINE1 SINE B4 3 165 0 4 1044 689 266 127 24 chr11 60225533 60225547 -61618309 + B4A SINE B4 231 247 -45 4 1044 183 100 0 0 chr11 60225563 60225593 -61618263 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 4 1044 348 302 51 20 chr11 60225991 60226021 -61617835 + L1MB8 LINE L1 5375 5404 -769 4 1044 505 228 122 0 chr11 60226021 60226144 -61617712 + B1_Mur1 SINE Alu 2 139 -10 4 1044 589 270 1 7 chr11 60226144 60226310 -61617546 + L1MB8 LINE L1 5405 5577 -607 4 1044 643 237 30 0 chr11 60226326 60226461 -61617395 + B1_Mur4 SINE Alu 2 140 -10 4 1044 799 245 136 105 chr11 60226494 60226920 -61616936 + L1MB8 LINE L1 5572 6027 -151 4 1044 1095 176 39 0 chr11 60226920 60227124 -61616732 - B3 SINE B2 -4 212 1 4 1044 799 245 136 105 chr11 60227124 60227249 -61616607 + L1MB8 LINE L1 6028 6143 -35 4 1044 1027 221 14 28 chr11 60227249 60227463 -61616393 - B3 SINE B2 -5 211 1 4 1044 799 245 136 105 chr11 60227463 60227498 -61616358 + L1MB8 LINE L1 6144 6177 -1 4 1044 485 304 24 53 chr11 60227504 60227674 -61616182 + RSINE1 SINE B4 1 165 0 4 1044 302 203 149 0 chr11 60227790 60227864 -61615992 - MER58A DNA MER1_type -105 119 35 4 1044 239 295 76 13 chr11 60228548 60228627 -61615229 - PB1 SINE Alu -43 84 1 4 1044 288 294 0 14 chr11 60228827 60228896 -61614960 + RSINE1 SINE B4 95 162 -3 4 1044 204 297 27 13 chr11 60229131 60229206 -61614650 + L2c LINE L2 3064 3139 -248 4 1044 233 243 10 149 chr11 60229608 60229718 -61614138 - L2b LINE L2 -24 3402 3256 4 1044 270 56 0 0 chr11 60229804 60229840 -61614016 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1044 222 37 0 0 chr11 60229853 60229880 -61613976 + (TGG)n Simple_repeat Simple_repeat 2 28 0 4 1044 735 148 0 9 chr11 60229880 60229996 -61613860 + B1_Mus2 SINE Alu 33 147 0 4 1044 825 132 0 0 chr11 60230779 60230923 -61612933 + (TG)n Simple_repeat Simple_repeat 2 145 0 4 1044 666 206 165 5 chr11 60233565 60233765 -61610091 - L1MB8 LINE L1 -12 6166 5935 4 1044 276 277 255 0 chr11 60233768 60233862 -61609994 + PB1D7 SINE Alu 3 120 0 4 1044 817 253 67 4 chr11 60233891 60234145 -61609711 - L1MB8 LINE L1 -231 5947 5678 4 1044 344 333 11 11 chr11 60234166 60234257 -61609599 - PB1 SINE Alu -26 101 11 4 1044 854 247 114 24 chr11 60234261 60234551 -61609305 - L1MB8 LINE L1 -486 5692 5377 4 1044 1272 242 26 0 chr11 60234605 60234869 -61608987 - B4A SINE B4 -20 272 2 4 1044 904 127 127 0 chr11 60234878 60235044 -61608812 - URR1A DNA MER1_type -3 223 37 4 1044 225 0 0 0 chr11 60235801 60235826 -61608030 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1044 1197 42 28 0 chr11 60235826 60235969 -61607887 - B1_Mm SINE Alu 0 147 1 4 1044 636 246 112 12 chr11 60236045 60236214 -61607642 + B3A SINE B2 8 193 -5 4 1044 252 94 57 0 chr11 60236447 60236500 -61607356 + GA-rich Low_complexity Low_complexity 2 57 0 4 1044 575 285 46 6 chr11 60236953 60237126 -61606730 + B3A SINE B2 1 180 -18 4 1044 1521 53 26 0 chr11 60237129 60237319 -61606537 + B2_Mm2 SINE B2 1 195 0 4 1044 627 205 16 33 chr11 60237392 60237513 -61606343 + PB1D9 SINE Alu 1 119 -1 4 1044 22 56 0 0 chr11 60237903 60237939 -61605917 + AT_rich Low_complexity Low_complexity 1 36 0 4 1044 826 271 17 0 chr11 60237952 60238129 -61605727 - B3A SINE B2 -18 180 1 4 1044 419 340 70 107 chr11 60238727 60238815 -61605041 + B4A SINE B4 2 96 -196 4 1044 1623 43 0 0 chr11 60238815 60239001 -61604855 - B2_Mm1t SINE B2 -7 186 1 4 1044 419 340 70 107 chr11 60239001 60239023 -61604833 + B4A SINE B4 97 101 -191 4 1044 565 228 192 60 chr11 60239023 60239205 -61604651 - B3 SINE B2 -6 210 5 4 1044 419 340 70 107 chr11 60239205 60239393 -61604463 + B4A SINE B4 102 290 -2 4 1044 391 290 98 43 chr11 60239443 60239627 -61604229 + B3A SINE B2 3 196 -2 4 1044 628 197 94 0 chr11 60239715 60239842 -61604014 + B1_Mur4 SINE Alu 4 142 -8 4 1044 775 68 246 0 chr11 60240551 60240669 -61603187 + B1_Mus1 SINE Alu 2 148 0 4 1044 390 269 73 22 chr11 60241196 60241333 -61602523 - B1F1 SINE Alu -3 146 3 4 1044 297 239 68 0 chr11 60241531 60241619 -61602237 + B1_Mur1 SINE Alu 49 142 -7 4 1044 879 136 63 14 chr11 60241629 60241771 -61602085 + B1_Mur4 SINE Alu 1 149 -1 4 1044 1325 103 0 35 chr11 60241774 60241976 -61601880 + B2_Mm2 SINE B2 1 195 0 4 1044 225 250 0 0 chr11 60242551 60242589 -61601267 + T-rich Low_complexity Low_complexity 17 54 0 4 1044 1185 75 0 0 chr11 60242589 60242736 -61601120 - B1_Mus1 SINE Alu 0 148 2 4 1044 225 250 0 0 chr11 60242736 60242749 -61601107 + T-rich Low_complexity Low_complexity 4 16 0 4 1044 623 248 70 0 chr11 60243250 60243379 -61600477 + B1_Mur1 SINE Alu 2 139 -10 4 1044 1170 68 0 0 chr11 60243379 60243526 -61600330 + B1_Mus1 SINE Alu 1 148 0 4 1044 1160 189 15 0 chr11 60243587 60243793 -61600063 + B3 SINE B2 5 213 -3 4 1044 1184 55 7 0 chr11 60244028 60244173 -61599683 + B1_Mm SINE Alu 2 147 0 4 1044 591 292 70 40 chr11 60244214 60244414 -61599442 + B4 SINE B4 1 206 -86 4 1044 225 204 93 0 chr11 60244475 60244529 -61599327 + ID4 SINE ID 3 61 -22 4 1044 1046 224 23 41 chr11 60244665 60244884 -61598972 - B3 SINE B2 -1 215 1 4 1044 313 259 53 18 chr11 60244907 60245021 -61598835 + Charlie22a DNA MER1_type 291 408 -83 4 1044 674 193 0 16 chr11 60245096 60245217 -61598639 + PB1D9 SINE Alu 2 120 0 4 1044 234 0 0 0 chr11 60246587 60246613 -61597243 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1044 285 321 0 13 chr11 60246613 60246692 -61597164 - PB1D9 SINE Alu -11 109 32 5 1044 1116 179 61 0 chr11 60247171 60247367 -61596489 + B3 SINE B2 4 211 -5 5 1044 660 247 7 0 chr11 60247382 60247528 -61596328 + B1_Mur1 SINE Alu 2 148 -1 5 1044 352 23 0 0 chr11 60247528 60247571 -61596285 + B1_Mm SINE Alu 96 138 -9 5 1044 1227 41 0 0 chr11 60247645 60247792 -61596064 - B1_Mm SINE Alu 0 147 1 5 1044 1015 113 7 0 chr11 60248173 60248315 -61595541 - B1_Mur3 SINE Alu -4 145 3 5 1044 225 0 0 0 chr11 60248317 60248342 -61595514 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1044 326 289 42 42 chr11 60248444 60248563 -61595293 - B1F1 SINE Alu -1 119 1 5 1044 261 333 20 10 chr11 60248475 60248575 -61595281 - ID_B1 SINE B4 -55 169 69 5 1044 433 136 724 53 chr11 60248641 60248768 -61595088 - B3A SINE B2 -3 213 2 5 1044 425 259 452 0 chr11 60248834 60249035 -61594821 - B4A SINE B4 -1 291 1 5 1044 582 296 21 14 chr11 60249051 60249195 -61594661 - B1_Mus2 SINE Alu 0 147 3 5 1044 512 122 12 0 chr11 60249188 60249270 -61594586 + B1_Mus2 SINE Alu 1 83 -64 5 1044 297 238 0 67 chr11 60249190 60249280 -61594576 + MT2B2 LTR ERVL 167 250 -334 5 1044 191 114 0 28 chr11 60249280 60249316 -61594540 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 5 1044 407 220 81 18 chr11 60249341 60249452 -61594404 - ID_B1 SINE B4 -1 223 106 5 1044 793 140 88 7 chr11 60249482 60249619 -61594237 - B1_Mur1 SINE Alu 0 149 2 5 1044 1375 85 26 0 chr11 60250624 60250813 -61593043 + B2_Mm2 SINE B2 2 195 0 5 1044 359 228 25 0 chr11 60251078 60251157 -61592699 - ID4 SINE ID -1 82 2 5 1044 323 246 14 0 chr11 60251250 60251319 -61592537 + BC1_Mm scRNA scRNA 21 90 -62 5 1044 876 244 6 0 chr11 60252305 60252469 -61591387 - B3 SINE B2 -4 212 48 5 1044 366 23 0 0 chr11 60252493 60252536 -61591320 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1044 249 33 0 0 chr11 60252536 60252565 -61591291 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1044 220 246 29 103 chr11 60252649 60252717 -61591139 - ID4_ SINE ID -16 67 5 5 1044 2837 169 115 51 chr11 60252918 60253877 -61589979 - RLTR13D1 LTR ERVK 0 1023 1 5 1044 692 274 76 0 chr11 60254013 60254210 -61589646 + B3 SINE B2 2 213 -3 5 1044 284 292 25 74 chr11 60254366 60254488 -61589368 - PB1D10 SINE Alu -1 116 1 5 1044 312 262 35 12 chr11 60254405 60254490 -61589366 - ID_B1 SINE B4 -58 166 80 5 1044 616 219 21 28 chr11 60254497 60254638 -61589218 - B1_Mur1 SINE Alu 0 149 10 5 1044 306 83 42 0 chr11 60254634 60254682 -61589174 + B1_Mur4 SINE Alu 101 150 0 5 1044 571 267 0 0 chr11 60254841 60254961 -61588895 + PB1 SINE Alu 1 120 -7 5 1044 669 221 36 7 chr11 60254983 60255120 -61588736 + B3 SINE B2 1 141 -75 5 1044 354 74 0 0 chr11 60255120 60255174 -61588682 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1044 658 240 0 0 chr11 60255219 60255344 -61588512 + B1_Mur1 SINE Alu 6 130 -19 5 1044 21 36 0 0 chr11 60256277 60256305 -61587551 + AT_rich Low_complexity Low_complexity 1 28 0 5 1044 234 0 0 0 chr11 60256707 60256733 -61587123 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1044 730 169 23 23 chr11 60257659 60257792 -61586064 - B1_Mur1 SINE Alu -16 133 1 5 1044 797 235 24 44 chr11 60259055 60259260 -61584596 - B3 SINE B2 -15 201 1 5 1044 1175 61 0 20 chr11 60259603 60259753 -61584103 + B1_Mus1 SINE Alu 1 147 -1 5 1044 416 132 0 13 chr11 60261391 60261408 -61582448 + (GAAA)n Simple_repeat Simple_repeat 2 18 0 5 1044 1201 68 0 0 chr11 60261408 60261555 -61582301 + B1_Mm SINE Alu 1 147 0 5 1044 416 132 0 13 chr11 60261555 60261614 -61582242 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 5 1044 234 132 93 19 chr11 60261794 60261848 -61582008 - MIRm SINE MIR -13 263 206 5 1044 421 248 26 9 chr11 60261934 60262048 -61581808 - PB1 SINE Alu -3 124 9 5 1044 267 263 38 57 chr11 60262094 60262141 -61581715 - PB1D7 SINE Alu -12 108 66 5 1044 2938 57 62 5 chr11 60262141 60262530 -61581326 + RLTR10A LTR ERVK 1 411 0 5 1044 267 263 38 57 chr11 60262530 60262587 -61581269 - PB1D7 SINE Alu -55 65 6 5 1044 1327 124 18 50 chr11 60263615 60263836 -61580020 + B3 SINE B2 1 214 -2 5 1044 315 287 139 0 chr11 60264150 60264251 -61579605 + PB1 SINE Alu 1 115 -12 5 1044 364 217 234 41 chr11 60264482 60264623 -61579233 + B4A SINE B4 2 169 -123 5 1044 1209 68 0 19 chr11 60264641 60265127 -61578729 + (TCC)n Simple_repeat Simple_repeat 1 476 0 5 1044 496 188 0 15 chr11 60265128 60265258 -61578598 + CT-rich Low_complexity Low_complexity 3 130 0 5 1044 553 163 21 9 chr11 60265260 60265372 -61578484 - B1_Mur3 SINE Alu -1 148 3 5 1044 1139 233 72 105 chr11 60265383 60265829 -61578027 - RLTR11B LTR ERVK -4 449 19 5 1044 524 250 0 44 chr11 60265816 60265929 -61577927 + RSINE1 SINE B4 23 130 -35 5 1044 603 0 0 0 chr11 60266020 60266087 -61577769 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1044 901 197 64 25 chr11 60266865 60267068 -61576788 + B3 SINE B2 1 211 -5 5 1044 195 246 17 50 chr11 60267319 60267379 -61576477 + MIRc SINE MIR 31 88 -180 5 1044 727 226 17 174 chr11 60267432 60267622 -61576234 + B3 SINE B2 31 210 -6 5 1044 442 270 18 9 chr11 60267704 60267816 -61576040 - B1_Mur1 SINE Alu -35 114 2 5 1044 294 330 44 27 chr11 60268568 60268744 -61575112 + MIRm SINE MIR 6 178 -90 5 1044 1172 55 0 0 chr11 60269231 60269377 -61574479 - B1_Mus2 SINE Alu 0 147 2 5 1044 606 217 26 9 chr11 60270906 60271022 -61572834 - RSINE1 SINE B4 -38 127 10 5 1044 634 230 0 57 chr11 60271293 60271450 -61572406 - B1_Mur1 SINE Alu 0 149 2 5 1044 327 222 56 0 chr11 60271524 60271596 -61572260 - B4 SINE B4 -3 289 214 5 1044 1002 130 57 42 chr11 60271614 60271806 -61572050 - B2_Mm2 SINE B2 0 195 1 5 1044 553 265 92 13 chr11 60271806 60271959 -61571897 - B4 SINE B4 -63 229 65 5 1044 461 236 9 0 chr11 60272164 60272270 -61571586 - L1MC3 LINE L1 -970 6815 6709 5 1044 573 241 0 17 chr11 60273973 60274091 -61569765 + PB1D10 SINE Alu 1 116 -1 5 1044 417 274 17 58 chr11 60273984 60274104 -61569752 + ID_B1 SINE B4 92 206 -18 5 1044 803 186 14 7 chr11 60276179 60276320 -61567536 - B1_Mm SINE Alu -1 146 5 5 1044 2216 157 98 13 chr11 60276904 60277292 -61566564 - MTC LTR MaLR 0 421 1 5 1044 227 122 58 58 chr11 60280065 60280117 -61563739 - Charlie6 DNA MER1_type -1286 2214 2163 5 1044 883 58 8 0 chr11 60280338 60280459 -61563397 + B1_Mus1 SINE Alu 27 148 0 5 1044 25 0 0 0 chr11 60282197 60282222 -61561634 + AT_rich Low_complexity Low_complexity 1 25 0 5 1044 267 305 93 0 chr11 60283865 60283983 -61559873 - MLT1B LTR MaLR -69 321 193 5 1044 307 310 0 74 chr11 60284412 60284433 -61559423 + MT2B LTR ERVL 145 156 -445 5 1044 700 169 0 0 chr11 60284433 60284551 -61559305 + B1_Mus2 SINE Alu 2 119 -28 5 1044 387 0 0 0 chr11 60284552 60284595 -61559261 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1044 993 214 85 55 chr11 60284716 60284988 -61558868 - B4A SINE B4 -12 280 1 5 1044 358 248 139 54 chr11 60285025 60285037 -61558819 - B3 SINE B2 -4 212 203 5 1044 1223 61 0 0 chr11 60285037 60285184 -61558672 - B1_Mus1 SINE Alu 0 148 2 5 1044 437 243 149 22 chr11 60285184 60285337 -61558519 - B3A SINE B2 -14 202 33 5 1044 517 290 30 15 chr11 60285394 60285527 -61558329 + RSINE1 SINE B4 2 136 -29 5 1044 335 262 71 0 chr11 60285786 60285870 -61557986 - ID_B1 SINE B4 -14 210 121 5 1044 533 212 0 71 chr11 60286418 60286545 -61557311 - B1_Mur3 SINE Alu -9 140 23 5 1044 614 94 10 4 chr11 60286670 60286773 -61557083 + B1_Mus2 SINE Alu 49 148 -1 5 1044 1404 249 104 35 chr11 60286775 60287295 -61556561 - Lx7 LINE L1 -169 7527 6972 5 1044 246 132 0 0 chr11 60287459 60287512 -61556344 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1044 740 197 6 64 chr11 60287513 60287670 -61556186 - B1F2 SINE Alu 0 149 2 5 1044 305 140 355 0 chr11 60287817 60287910 -61555946 + B1_Mus1 SINE Alu 22 147 -1 5 1044 1236 72 66 0 chr11 60287985 60288152 -61555704 - B2_Mm1a SINE B2 -15 178 1 5 1044 1004 141 57 42 chr11 60288175 60288367 -61555489 - B2_Mm2 SINE B2 0 195 1 5 1044 1571 142 76 17 chr11 60288367 60288668 -61555188 - ORR1B1 LTR MaLR -42 352 34 5 1044 387 202 0 0 chr11 60288919 60289003 -61554853 + CT-rich Low_complexity Low_complexity 3 86 0 5 1044 197 425 11 0 chr11 60289154 60289248 -61554608 - MIR3 SINE MIR -52 156 62 5 1045 307 296 93 14 chr11 60295354 60295517 -61548339 + MIRb SINE MIR 16 194 -82 5 1045 387 292 20 53 chr11 60295585 60295737 -61548119 - MIR SINE MIR -92 170 24 5 1045 672 215 15 0 chr11 60296062 60296192 -61547664 - B3 SINE B2 -84 132 1 5 1045 195 395 12 0 chr11 60299284 60299365 -61544491 + MIR SINE MIR 107 188 -74 5 1045 429 277 0 59 chr11 60299369 60299488 -61544368 + PB1D10 SINE Alu 5 116 -1 5 1045 323 265 0 0 chr11 60299503 60299571 -61544285 + ID4 SINE ID 8 75 -8 5 1045 576 77 0 0 chr11 60300977 60301055 -61542801 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 6 1045 250 185 0 34 chr11 60301980 60302039 -61541817 + MIRc SINE MIR 102 161 -107 6 1045 699 145 130 7 chr11 60302714 60302860 -61540996 - ORR1B1 LTR MaLR -230 164 1 6 1045 197 0 71 0 chr11 60302885 60302913 -61540943 + (CAAAAA)n Simple_repeat Simple_repeat 4 33 0 6 1045 391 266 32 0 chr11 60302958 60303052 -61540804 + RSINE1 SINE B4 67 163 -2 6 1045 1060 116 0 13 chr11 60303078 60303227 -61540629 + B1_Mus1 SINE Alu 2 148 0 6 1045 35 24 0 0 chr11 60303251 60303293 -61540563 + AT_rich Low_complexity Low_complexity 1 42 0 6 1045 1363 86 21 11 chr11 60303346 60303534 -61540322 + B2_Mm1t SINE B2 2 191 -2 6 1045 269 250 258 11 chr11 60303658 60303751 -61540105 - PB1D10 SINE Alu 0 117 2 6 1045 371 21 0 20 chr11 60303780 60303829 -61540027 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1045 496 177 144 15 chr11 60303832 60303964 -61539892 - B3 SINE B2 -67 149 1 6 1045 700 260 104 5 chr11 60304000 60304220 -61539636 - B4A SINE B4 -49 243 2 6 1045 359 296 0 0 chr11 60304297 60304378 -61539478 - ID4 SINE ID -1 82 2 6 1045 195 195 0 0 chr11 60305806 60305847 -61538009 - MIRc SINE MIR -177 91 51 6 1045 389 285 22 44 chr11 60307188 60307324 -61536532 + MIRb SINE MIR 58 190 -78 6 1045 477 0 0 0 chr11 60308342 60308395 -61535461 + (TCTG)n Simple_repeat Simple_repeat 3 55 0 6 1045 245 98 0 24 chr11 60309184 60309226 -61534630 + (TTA)n Simple_repeat Simple_repeat 3 43 0 6 1045 231 250 95 48 chr11 60309330 60309435 -61534421 + Zaphod2 DNA Tip100 102 211 -3313 6 1045 357 341 19 46 chr11 60313278 60313454 -61530402 + MIR SINE MIR 4 169 -93 6 1045 4758 97 17 107 chr11 60314025 60314187 -61529669 + RMER6A LTR ERVK 1 148 -608 6 1045 1296 20 0 0 chr11 60314187 60314333 -61529523 - B1_Mm SINE Alu 0 147 2 6 1045 4758 97 17 107 chr11 60314333 60314527 -61529329 + RMER6A LTR ERVK 149 321 -435 6 1045 249 33 0 0 chr11 60314527 60314557 -61529299 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1045 4758 97 17 107 chr11 60314557 60315030 -61528826 + RMER6A LTR ERVK 322 756 0 6 1045 287 247 65 0 chr11 60316103 60316180 -61527676 - AluG_3 SINE Alu -92 219 138 6 1045 255 61 0 0 chr11 60317378 60317411 -61526445 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1045 289 308 29 0 chr11 60318897 60319001 -61524855 - MIR SINE MIR -105 157 51 6 1045 301 324 148 14 chr11 60319031 60319341 -61524515 + L2b LINE L2 2795 3165 -261 6 1045 272 196 0 0 chr11 60319990 60320041 -61523815 + ID_B1 SINE B4 99 149 -75 6 1045 1251 28 7 0 chr11 60321398 60321543 -61522313 + B1_Mus2 SINE Alu 2 147 0 6 1045 180 97 0 0 chr11 60321543 60321574 -61522282 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1045 203 0 37 0 chr11 60322889 60322916 -61520940 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1045 230 166 16 8 chr11 60323809 60323874 -61519982 + MIR SINE MIR 112 181 -87 6 1045 399 263 51 34 chr11 60324922 60325040 -61518816 - MLT1K LTR MaLR -17 578 459 6 1045 865 214 0 0 chr11 60325063 60325222 -61518634 + B3A SINE B2 2 160 -38 6 1045 351 0 0 0 chr11 60325224 60325263 -61518593 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1045 318 139 0 0 chr11 60325757 60325829 -61518027 + (T)n Simple_repeat Simple_repeat 1 72 0 6 1045 1186 68 0 0 chr11 60325831 60325978 -61517878 - B1_Mus1 SINE Alu 0 148 2 6 1045 1092 127 30 55 chr11 60326101 60326301 -61517555 + B2_Mm2 SINE B2 1 195 0 6 1045 479 282 130 0 chr11 60326342 60326473 -61517383 - RSINE1 SINE B4 -16 149 2 6 1045 679 133 91 8 chr11 60326504 60326625 -61517231 + ID_B1 SINE B4 79 209 -15 6 1045 382 192 263 0 chr11 60326632 60326731 -61517125 + RSINE1 SINE B4 2 126 -39 6 1045 207 0 0 0 chr11 60326731 60326754 -61517102 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1045 558 0 0 0 chr11 60327108 60327170 -61516686 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1045 792 148 6 13 chr11 60327260 60327417 -61516439 + CT-rich Low_complexity Low_complexity 1 156 0 6 1045 366 292 19 0 chr11 60327643 60327749 -61516107 - B4A SINE B4 -182 110 3 6 1045 630 262 12 30 chr11 60327766 60327931 -61515925 + RSINE1 SINE B4 2 163 -2 6 1045 873 139 247 6 chr11 60327991 60328165 -61515691 - B3 SINE B2 0 216 1 6 1045 263 254 29 122 chr11 60328226 60328365 -61515491 - MLT1K LTR MaLR -323 272 147 6 1045 339 278 18 53 chr11 60328965 60328992 -61514864 + ID_B1 SINE B4 65 172 -50 6 1045 362 259 12 0 chr11 60328992 60329077 -61514779 + PB1D10 SINE Alu 6 91 -26 6 1045 469 205 161 8 chr11 60329082 60329200 -61514656 - MTD LTR MaLR -14 405 270 6 1045 348 164 16 0 chr11 60329190 60329251 -61514605 - B1_Mus2 SINE Alu -44 103 42 6 1045 231 245 65 56 chr11 60329251 60329295 -61514561 - RLTR25B LTR ERVK -523 502 397 6 1045 531 162 6 23 chr11 60329295 60329472 -61514384 + CT-rich Low_complexity Low_complexity 3 176 0 6 1045 533 128 40 13 chr11 60329434 60329584 -61514272 + (CCTG)n Simple_repeat Simple_repeat 3 156 0 6 1045 251 173 77 0 chr11 60329584 60329636 -61514220 + MurSatRep1 Unknown Unknown 229 284 -1853 6 1045 734 236 16 62 chr11 60329644 60329735 -61514121 - MTD LTR MaLR -217 202 121 6 1045 1475 78 15 25 chr11 60329735 60329932 -61513924 + B2_Mm2 SINE B2 1 195 0 6 1045 734 236 16 62 chr11 60329932 60330034 -61513822 - MTD LTR MaLR -299 120 18 6 1045 315 0 0 0 chr11 60330034 60330069 -61513787 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1045 297 245 88 0 chr11 60331236 60331338 -61512518 + MER2 DNA MER2_type 99 209 -136 6 1045 1164 75 0 7 chr11 60331340 60331488 -61512368 + B1_Mus2 SINE Alu 1 147 0 6 1045 285 81 16 31 chr11 60331511 60331575 -61512281 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 6 1045 382 324 7 35 chr11 60331576 60331717 -61512139 + MER2 DNA MER2_type 200 336 -9 6 1045 368 229 0 35 chr11 60332693 60332779 -61511077 - ID4 SINE ID 0 83 1 6 1045 240 318 34 0 chr11 60332791 60332879 -61510977 - MIR SINE MIR -64 198 108 6 1045 1012 269 152 41 chr11 60332880 60333315 -61510541 - MLT1D LTR MaLR 0 505 23 6 1045 192 239 86 43 chr11 60333333 60333403 -61510453 - MIRm SINE MIR -165 111 39 6 1045 2518 120 50 11 chr11 60333456 60333835 -61510021 - ORR1B1 LTR MaLR 0 394 1 6 1045 843 204 0 0 chr11 60334526 60334668 -61509188 + B1_Mur1 SINE Alu 5 146 -3 6 1045 417 298 8 8 chr11 60335492 60335617 -61508239 + PB1 SINE Alu 1 125 -2 6 1045 327 310 17 33 chr11 60335806 60335926 -61507930 - Charlie1b DNA MER1_type -354 169 52 6 1045 369 0 0 0 chr11 60335971 60336012 -61507844 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1045 917 163 202 0 chr11 60336042 60336220 -61507636 - B3 SINE B2 0 216 3 6 1045 419 279 97 16 chr11 60336295 60336419 -61507437 - ID_B1 SINE B4 -5 219 86 6 1045 697 268 40 20 chr11 60336486 60336688 -61507168 + B4A SINE B4 1 206 -86 6 1045 747 187 0 8 chr11 60336733 60336857 -61506999 + B1_Mur1 SINE Alu 27 149 0 6 1045 191 167 0 23 chr11 60336869 60336912 -61506944 + (TAA)n Simple_repeat Simple_repeat 2 43 0 6 1045 194 176 0 0 chr11 60337322 60337356 -61506500 + MIRc SINE MIR 109 142 -126 6 1045 547 255 26 109 chr11 60338264 60338493 -61505363 - MLT1B LTR MaLR -85 305 96 6 1045 241 355 63 49 chr11 60338523 60338665 -61505191 - ID_B1 SINE B4 -80 144 1 6 1045 202 211 0 0 chr11 60338751 60338789 -61505067 + T-rich Low_complexity Low_complexity 2 39 0 6 1045 1118 68 0 52 chr11 60338789 60338944 -61504912 - B1_Mm SINE Alu 0 147 1 6 1045 416 236 62 26 chr11 60338956 60339069 -61504787 + ID_B1 SINE B4 79 195 -29 6 1045 689 150 7 153 chr11 60338972 60339122 -61504734 + B1_Mur3 SINE Alu 21 148 -1 6 1045 1554 42 0 21 chr11 60339124 60339318 -61504538 + B2_Mm1a SINE B2 2 191 -2 6 1045 307 298 19 37 chr11 60339836 60339944 -61503912 - MIR SINE MIR -74 134 29 6 1045 806 208 27 14 chr11 60340360 60340506 -61503350 - B3 SINE B2 -68 148 1 6 1045 221 0 0 33 chr11 60340514 60340544 -61503312 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1045 358 226 8 128 chr11 60340569 60340686 -61503170 + MT2B LTR ERVL 155 257 -344 6 1045 805 193 0 28 chr11 60340587 60340731 -61503125 + B1_Mur4 SINE Alu 7 146 -4 6 1045 231 36 0 0 chr11 60340731 60340759 -61503097 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 6 1045 801 190 99 109 chr11 60341018 60341219 -61502637 + B3 SINE B2 1 199 -17 6 1045 281 306 0 0 chr11 60341589 60341651 -61502205 + PB1D10 SINE Alu 43 104 -13 6 1045 871 175 102 102 chr11 60341660 60341876 -61501980 + B3 SINE B2 1 216 0 6 1045 523 249 139 46 chr11 60342592 60342765 -61501091 - MTE2b LTR MaLR 0 379 191 6 1045 417 180 47 126 chr11 60342889 60343016 -61500840 + MT2B LTR ERVL 162 278 -323 6 1045 879 163 7 7 chr11 60342902 60343044 -61500812 + B1_Mur3 SINE Alu 8 149 0 6 1045 27 29 0 0 chr11 60343044 60343078 -61500778 + AT_rich Low_complexity Low_complexity 1 34 0 6 1045 1258 27 0 26 chr11 60343081 60343233 -61500623 + B1_Mus1 SINE Alu 1 148 0 6 1045 428 239 72 108 chr11 60343242 60343364 -61500492 + CYRA11_Mm Unknown Y-chromosome 65 177 -440 6 1045 847 102 31 0 chr11 60343364 60343492 -61500364 - URR1B DNA MER1_type -2 223 92 6 1045 907 181 0 7 chr11 60343492 60343642 -61500214 + B1_Mur2 SINE Alu 1 149 0 6 1045 1452 66 11 0 chr11 60343646 60343829 -61500027 + B2_Mm2 SINE B2 3 187 -8 6 1045 298 190 17 0 chr11 60343916 60343974 -61499882 - URR1B DNA MER1_type -166 59 1 6 1045 789 164 52 0 chr11 60344301 60344435 -61499421 + B1_Mur2 SINE Alu 3 143 -6 6 1045 322 218 0 0 chr11 60344446 60344501 -61499355 - tRNA-Cys-TGY tRNA tRNA -3 72 18 7 1045 706 251 65 12 chr11 60344653 60344822 -61499034 - MTE2b LTR MaLR -184 195 18 6 1045 21 0 0 0 chr11 60345402 60345423 -61498433 + AT_rich Low_complexity Low_complexity 1 21 0 7 1045 363 78 0 0 chr11 60345531 60345582 -61498274 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 7 1045 437 127 99 0 chr11 60345583 60345654 -61498202 - B2_Mm2 SINE B2 -37 158 81 7 1045 765 199 14 7 chr11 60345698 60345845 -61498011 + B1_Mur3 SINE Alu 1 148 -1 7 1045 570 261 127 67 chr11 60347312 60347435 -61496421 - B4A SINE B4 -9 283 1 7 1045 1167 49 0 0 chr11 60347435 60347579 -61496277 - B2_Mm1a SINE B2 -49 144 1 7 1045 504 279 57 104 chr11 60347579 60347766 -61496090 - B4A SINE B4 -114 178 2 7 1045 568 275 144 96 chr11 60347808 60348037 -61495819 + B4 SINE B4 53 292 0 7 1045 309 239 42 0 chr11 60348079 60348150 -61495706 + PB1D10 SINE Alu 38 111 -6 7 1045 3776 187 103 8 chr11 60348158 60349031 -61494825 + Lx5 LINE L1 6095 7050 0 7 1045 820 148 8 8 chr11 60349074 60349203 -61494653 + B1_Mur3 SINE Alu 21 149 0 7 1045 204 83 56 0 chr11 60349206 60349242 -61494614 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 7 1045 266 197 158 0 chr11 60349245 60349321 -61494535 - MIRb SINE MIR -28 240 153 7 1045 285 253 70 50 chr11 60349503 60349603 -61494253 - PB1D9 SINE Alu -5 115 14 7 1045 184 229 0 0 chr11 60350048 60350083 -61493773 - MIR SINE MIR -61 147 113 7 1045 236 222 19 0 chr11 60350110 60350164 -61493692 - MIRb SINE MIR -73 195 141 7 1045 412 220 32 13 chr11 60350479 60350583 -61493273 - PB1D7 SINE Alu -4 116 7 7 1045 300 143 0 0 chr11 60352011 60352067 -61491789 + (CCG)n Simple_repeat Simple_repeat 3 58 0 7 1045 588 252 41 0 chr11 60353042 60353165 -61490691 - ID_B1 SINE B4 -17 207 80 7 1045 315 0 0 0 chr11 60353167 60353202 -61490654 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1045 225 0 0 0 chr11 60353202 60353227 -61490629 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1045 222 217 15 118 chr11 60353971 60354039 -61489817 + B1F SINE Alu 10 70 -79 7 1045 368 281 35 9 chr11 60354527 60354642 -61489214 - PB1D7 SINE Alu -1 119 2 7 1045 243 0 0 0 chr11 60354846 60354873 -61488983 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1045 314 330 50 151 chr11 60355142 60355273 -61488583 - MER20 DNA MER1_type -4 215 86 7 1045 1146 88 0 0 chr11 60355273 60355420 -61488436 - B1_Mus2 SINE Alu 0 147 1 7 1045 314 330 50 151 chr11 60355420 60355527 -61488329 - MER20 DNA MER1_type -134 85 1 7 1045 628 304 87 71 chr11 60356114 60356165 -61487691 + B4 SINE B4 20 73 -151 7 1045 1025 89 221 0 chr11 60356165 60356323 -61487533 - B2_Mm2 SINE B2 -2 193 1 7 1045 628 283 103 64 chr11 60356323 60356518 -61487338 + B4 SINE B4 74 280 -12 7 1045 539 79 124 0 chr11 60356572 60356661 -61487195 - B2_Mm2 SINE B2 -1 194 95 7 1045 216 356 43 50 chr11 60356630 60356684 -61487172 - B3A SINE B2 -60 138 85 7 1045 2706 50 3 20 chr11 60356684 60357032 -61486824 - L1_Mus2 LINE L1 0 6566 6225 7 1045 287 304 0 25 chr11 60357035 60357116 -61486740 - RSINE1 SINE B4 -85 80 2 7 1045 189 0 0 0 chr11 60357556 60357577 -61486279 + (ATG)n Simple_repeat Simple_repeat 2 22 0 7 1045 437 205 120 104 chr11 60357577 60357702 -61486154 - B1_Mur1 SINE Alu -8 141 15 7 1045 224 72 0 45 chr11 60358096 60358140 -61485716 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 7 1045 189 0 0 0 chr11 60358401 60358422 -61485434 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1045 192 77 0 0 chr11 60358868 60358894 -61484962 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 7 1045 413 296 38 107 chr11 60359446 60359461 -61484395 + ID_B1 SINE B4 77 219 0 7 1045 656 220 36 50 chr11 60359461 60359600 -61484256 + B1F SINE Alu 13 149 0 7 1045 754 221 0 28 chr11 60359781 60359925 -61483931 + B1_Mm SINE Alu 7 146 -1 7 1045 664 139 116 0 chr11 60360257 60360386 -61483470 + URR1B DNA MER1_type 62 205 -20 7 1045 398 159 50 26 chr11 60360850 60360940 -61482916 - ID4 SINE ID -58 94 3 7 1045 321 26 0 0 chr11 60361465 60361503 -61482353 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1045 514 260 177 25 chr11 60361504 60361662 -61482194 - B3A SINE B2 -16 182 1 7 1045 243 0 0 0 chr11 60361711 60361738 -61482118 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 7 1045 323 219 54 57 chr11 60361968 60362057 -61481799 + B1F SINE Alu 1 99 -21 7 1045 414 255 83 19 chr11 60362138 60362246 -61481610 - B1_Mur1 SINE Alu -12 137 23 7 1045 498 209 42 1 chr11 60362424 60362535 -61481321 + B1_Mur2 SINE Alu 27 141 -8 7 1045 597 226 51 29 chr11 60362535 60362672 -61481184 + B3 SINE B2 2 141 -75 7 1045 1139 74 14 0 chr11 60362919 60363067 -61480789 - B1_Mur4 SINE Alu 0 150 1 7 1045 300 271 90 33 chr11 60363073 60363195 -61480661 - L1MC3 LINE L1 -19 7766 7638 7 1045 301 244 39 0 chr11 60364500 60364578 -61479278 + ID4 SINE ID 3 83 0 7 1045 339 25 0 0 chr11 60365122 60365162 -61478694 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1045 1635 103 8 13 chr11 60365225 60365462 -61478394 - ORR1A4 LTR MaLR 0 329 94 7 1045 26 50 0 0 chr11 60365462 60365502 -61478354 + AT_rich Low_complexity Low_complexity 1 40 0 7 1045 311 200 0 0 chr11 60365509 60365564 -61478292 - B2_Mm2 SINE B2 -94 101 47 7 1045 1114 128 35 0 chr11 60365596 60365768 -61478088 - B2_Mm1t SINE B2 -14 179 2 7 1045 550 123 0 203 chr11 60365768 60365901 -61477955 - ORR1A4 LTR MaLR -223 106 1 7 1045 552 243 174 77 chr11 60365929 60366021 -61477835 - B3 SINE B2 -1 215 108 7 1045 736 136 310 12 chr11 60366021 60366192 -61477664 - URR1B DNA MER1_type -3 222 1 7 1045 552 243 174 77 chr11 60366192 60366295 -61477561 - B3 SINE B2 -109 107 1 7 1045 252 213 92 13 chr11 60366415 60366491 -61477365 - B4 SINE B4 -209 83 2 7 1045 212 322 17 0 chr11 60366660 60366719 -61477137 - ID4_ SINE ID -10 73 14 7 1045 331 161 32 0 chr11 60370700 60370762 -61473094 - MLT1E2 LTR MaLR -4 623 560 7 1045 450 176 198 0 chr11 60370762 60370853 -61473003 + PB1D10 SINE Alu 2 110 -7 7 1045 520 171 203 0 chr11 60370860 60370983 -61472873 + B1F SINE Alu 1 148 -1 7 1045 522 0 0 0 chr11 60371146 60371204 -61472652 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1045 212 217 78 62 chr11 60371215 60371279 -61472577 - PB1D7 SINE Alu -13 107 43 7 1045 427 219 73 0 chr11 60371352 60371475 -61472381 - BC1_Mm scRNA scRNA -20 132 1 7 1045 1090 141 97 13 chr11 60371807 60372044 -61471812 + MER33 DNA MER1_type 1 257 -67 7 1045 323 279 40 87 chr11 60372047 60372196 -61471660 - B3A SINE B2 0 198 57 7 1045 183 42 0 0 chr11 60372537 60372561 -61471295 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1045 339 233 55 0 chr11 60372655 60372728 -61471128 - ID4_ SINE ID 0 83 7 7 1045 1189 100 56 0 chr11 60373435 60373615 -61470241 - B2_Mm2 SINE B2 -5 190 1 7 1045 198 143 29 0 chr11 60373691 60373726 -61470130 + MIR SINE MIR 109 144 -64 7 1045 301 115 0 141 chr11 60373729 60373800 -61470056 + 4.5SRNA scRNA scRNA 25 85 -9 7 1045 759 114 18 0 chr11 60373743 60373857 -61469999 + B1_Mur3 SINE Alu 32 147 -2 7 1045 525 308 7 46 chr11 60374164 60374317 -61469539 + RSINE1 SINE B4 11 157 -8 7 1045 5307 55 0 0 chr11 60374869 60375512 -61468344 + L1_Mm LINE L1 4944 5586 -297 7 1045 7985 50 14 0 chr11 60375512 60376494 -61467362 + L1Md_F2 LINE L1 5587 6582 0 7 1045 1154 112 16 31 chr11 60376582 60376776 -61467080 - B2_Mm1a SINE B2 -2 191 1 7 1045 1220 97 23 0 chr11 60377366 60377541 -61466315 + B2_Mm2 SINE B2 10 188 -7 7 1045 2057 144 30 14 chr11 60377549 60377915 -61465941 + L1_Mus4 LINE L1 6259 6630 -6 7 1045 2922 152 79 6 chr11 60377927 60378448 -61465408 - RLTR31_Mm LTR ERVK -2 559 1 7 1045 240 279 57 29 chr11 60378466 60378536 -61465320 - B4 SINE B4 -219 73 2 7 1045 461 252 20 0 chr11 60378556 60378655 -61465201 - B1F SINE Alu -16 133 33 7 1045 266 218 86 65 chr11 60378579 60378672 -61465184 - MT2B2 LTR ERVL -321 263 169 7 1045 1044 104 0 0 chr11 60378768 60378903 -61464953 + B1_Mus1 SINE Alu 5 139 -9 7 1045 212 130 22 0 chr11 60378906 60378952 -61464904 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1045 459 252 9 9 chr11 60378960 60379072 -61464784 + PB1D9 SINE Alu 2 113 -7 7 1045 376 256 31 38 chr11 60379085 60379206 -61464650 + PB1D7 SINE Alu 1 120 0 7 1045 259 230 27 13 chr11 60379288 60379363 -61464493 + CT-rich Low_complexity Low_complexity 5 80 0 7 1045 982 108 107 6 chr11 60379405 60379573 -61464283 - B2_Mm2 SINE B2 -9 186 2 7 1045 225 245 20 0 chr11 60379574 60379623 -61464233 - PB1 SINE Alu -42 85 36 7 1045 283 341 97 8 chr11 60379678 60379802 -61464054 - MTE2b LTR MaLR -48 331 197 7 1045 730 155 0 65 chr11 60379836 60379916 -61463940 + B2_Mm2 SINE B2 1 77 -118 7 1045 3358 85 11 8 chr11 60379916 60380389 -61463467 - MT2C_Mm LTR ERVL -1 474 1 7 1045 730 155 0 65 chr11 60380389 60380446 -61463410 + B2_Mm2 SINE B2 78 129 -66 7 1045 534 191 0 0 chr11 60380473 60380599 -61463257 + GA-rich Low_complexity Low_complexity 1 126 0 7 1045 609 183 93 71 chr11 60380611 60380793 -61463063 - B2_Mm2 SINE B2 -7 188 3 7 1045 280 151 25 76 chr11 60380854 60380933 -61462923 + B1_Mus2 SINE Alu 73 147 0 7 1045 731 235 22 115 chr11 60380963 60381037 -61462819 + MTC LTR MaLR 1 76 -345 7 1045 880 144 14 7 chr11 60381037 60381184 -61462672 + B1_Mus1 SINE Alu 1 148 0 7 1045 731 236 22 114 chr11 60381184 60381337 -61462519 + MTC LTR MaLR 77 205 -216 7 1045 718 150 82 89 chr11 60381337 60381390 -61462466 + B1_Mus2 SINE Alu 3 53 -94 8 1045 1308 106 5 5 chr11 60381390 60381580 -61462276 + B2_Mm2 SINE B2 1 190 -5 8 1045 718 150 82 89 chr11 60381580 60381672 -61462184 + B1_Mus2 SINE Alu 54 147 0 8 1045 365 277 31 63 chr11 60381672 60381704 -61462152 + MTC LTR MaLR 190 222 -174 7 1045 270 81 0 0 chr11 60381704 60381741 -61462115 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 8 1045 1236 188 0 22 chr11 60381748 60381977 -61461879 + MTC LTR MaLR 196 419 -2 7 1045 348 250 102 66 chr11 60381977 60382114 -61461742 + ID_B1 SINE B4 6 147 -77 8 1045 453 260 134 0 chr11 60382442 60382569 -61461287 - B3 SINE B2 -10 206 63 8 1045 670 238 17 142 chr11 60382647 60382887 -61460969 + B3 SINE B2 6 215 -1 8 1045 762 127 0 23 chr11 60382988 60383117 -61460739 - B1_Mus1 SINE Alu 0 148 23 8 1045 331 215 25 123 chr11 60383026 60383148 -61460708 - MT2B LTR ERVL -337 264 155 8 1045 569 256 8 8 chr11 60383165 60383295 -61460561 + B1_Mus2 SINE Alu 14 143 -4 8 1045 297 0 0 0 chr11 60383295 60383328 -61460528 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 8 1045 353 235 71 0 chr11 60383370 60383455 -61460401 + RMER10A LTR ERVL 1 91 -351 8 1045 651 222 62 66 chr11 60383458 60383685 -61460171 + RMER10A LTR ERVL 205 430 -12 8 1045 285 269 59 79 chr11 60383755 60383856 -61460000 + PB1D10 SINE Alu 19 117 0 8 1045 312 265 188 0 chr11 60383876 60383993 -61459863 + B1_Mur1 SINE Alu 4 142 -7 8 1045 180 0 0 0 chr11 60384061 60384081 -61459775 + (TA)n Simple_repeat Simple_repeat 1 20 0 8 1045 297 51 0 0 chr11 60384081 60384119 -61459737 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1045 505 188 10 0 chr11 60384170 60384266 -61459590 - B2_Mm2 SINE B2 -98 97 1 8 1045 221 160 60 0 chr11 60384329 60384379 -61459477 + MIRc SINE MIR 93 145 -123 8 1045 805 189 0 7 chr11 60384398 60384529 -61459327 + B1_Mus1 SINE Alu 8 138 -10 8 1045 234 62 0 0 chr11 60384529 60384561 -61459295 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1045 424 338 13 46 chr11 60384865 60385017 -61458839 + RSINE1 SINE B4 11 157 -8 8 1045 1649 36 0 0 chr11 60385435 60385628 -61458228 - B2_Mm1a SINE B2 0 193 1 8 1045 997 150 10 31 chr11 60385855 60386048 -61457808 - B2_Mm1a SINE B2 -4 189 1 8 1045 225 0 0 0 chr11 60386583 60386608 -61457248 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1045 722 109 0 0 chr11 60386648 60386749 -61457107 + B2_Mm2 SINE B2 10 110 -85 8 1045 343 287 145 15 chr11 60389638 60389769 -61454087 - L1MD LINE L1 -2971 3175 3028 8 1045 492 100 41 82 chr11 60389826 60389924 -61453932 + B2_Mm2 SINE B2 95 188 -7 8 1045 1975 161 33 0 chr11 60389932 60390293 -61453563 + L1_Mus4 LINE L1 6259 6631 -5 8 1045 2792 143 93 8 chr11 60390306 60390820 -61453036 - RLTR31_Mm LTR ERVK -3 558 1 8 1045 224 333 107 0 chr11 60390824 60390908 -61452948 - ID_B1 SINE B4 -130 94 2 8 1045 461 252 20 0 chr11 60390928 60391027 -61452829 - B1F SINE Alu -16 133 33 8 1045 266 218 86 65 chr11 60390951 60391044 -61452812 - MT2B2 LTR ERVL -321 263 169 8 1045 1058 76 0 0 chr11 60391140 60391271 -61452585 + B1_Mus1 SINE Alu 5 135 -13 8 1045 360 0 0 0 chr11 60391273 60391313 -61452543 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 8 1045 407 237 8 41 chr11 60391320 60391443 -61452413 + PB1D9 SINE Alu 2 120 0 8 1045 423 254 50 42 chr11 60391446 60391565 -61452291 + PB1D7 SINE Alu 1 120 0 8 1045 215 180 33 0 chr11 60391647 60391708 -61452148 + CT-rich Low_complexity Low_complexity 6 68 0 8 1045 1061 78 107 6 chr11 60391776 60391944 -61451912 - B2_Mm2 SINE B2 -9 186 2 8 1045 225 245 20 0 chr11 60391945 60391994 -61451862 - PB1 SINE Alu -42 85 36 8 1045 279 316 74 0 chr11 60392049 60392144 -61451712 - MTE2b LTR MaLR -48 331 230 8 1045 6748 16 1 0 chr11 60392150 60392891 -61450965 - RLTR4_Mm LTR ERV1 0 742 1 8 1045 1870 15 0 0 chr11 60392891 60393095 -61450761 - RLTR4_MM-int LTR ERV1 0 7601 7398 8 1045 51706 16 2 0 chr11 60393076 60398769 -61445087 - RLTR4_MM-int LTR ERV1 -1899 5702 1 8 1045 6748 16 1 0 chr11 60398769 60399510 -61444346 - RLTR4_Mm LTR ERV1 0 742 1 8 1045 726 155 0 65 chr11 60399575 60399655 -61444201 + B2_Mm2 SINE B2 1 77 -118 8 1045 3311 90 11 8 chr11 60399655 60400128 -61443728 - MT2C_Mm LTR ERVL -1 474 1 8 1045 726 155 0 65 chr11 60400128 60400185 -61443671 + B2_Mm2 SINE B2 78 129 -66 8 1045 342 173 0 0 chr11 60400215 60400290 -61443566 + GA-rich Low_complexity Low_complexity 2 76 0 8 1045 636 214 33 22 chr11 60400302 60400484 -61443372 - B2_Mm2 SINE B2 -9 186 3 8 1045 189 0 0 0 chr11 60400502 60400523 -61443333 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1045 423 152 19 25 chr11 60400544 60400637 -61443219 + B1_Mur4 SINE Alu 31 150 0 8 1045 1816 202 18 101 chr11 60400679 60400753 -61443103 + MTC LTR MaLR 1 79 -342 8 1045 1060 102 7 0 chr11 60400753 60400900 -61442956 + B1_Mus1 SINE Alu 1 148 0 8 1045 1816 202 18 101 chr11 60400900 60400913 -61442943 + MTC LTR MaLR 80 89 -332 8 1045 4234 84 24 32 chr11 60400913 60401505 -61442351 + LTRIS_Mus LTR ERV1 1 587 0 8 1045 1816 202 18 101 chr11 60401505 60401645 -61442211 + MTC LTR MaLR 90 207 -214 8 1045 784 141 78 0 chr11 60401645 60401773 -61442083 + B1_Mur3 SINE Alu 3 140 -9 8 1045 897 97 26 7 chr11 60401777 60401932 -61441924 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 8 1045 1816 202 18 101 chr11 60401932 60402154 -61441702 + MTC LTR MaLR 208 419 -2 8 1045 440 302 22 45 chr11 60402154 60402322 -61441534 + ID_B1 SINE B4 6 174 -118 8 1045 615 221 0 90 chr11 60402787 60402931 -61440925 + B3A SINE B2 6 136 -62 8 1045 315 221 24 181 chr11 60403059 60403116 -61440740 + PB1 SINE Alu 19 66 -61 8 1045 1466 52 0 94 chr11 60403116 60403328 -61440528 - B2_Mm1a SINE B2 -1 192 1 8 1045 315 221 24 181 chr11 60403328 60403397 -61440459 + PB1 SINE Alu 67 125 -2 8 1045 34 65 0 0 chr11 60403544 60403606 -61440250 + AT_rich Low_complexity Low_complexity 1 62 0 8 1045 582 74 5 12 chr11 60403626 60403734 -61440122 - B2_Mm2 SINE B2 -107 109 6 8 1045 1461 73 11 0 chr11 60403739 60403930 -61439926 - B2_Mm1t SINE B2 0 193 1 8 1045 297 289 202 0 chr11 60404019 60404133 -61439723 + B1_Mur1 SINE Alu 4 140 -9 8 1045 23 33 0 0 chr11 60404146 60404176 -61439680 + AT_rich Low_complexity Low_complexity 1 30 0 8 1045 587 135 10 0 chr11 60404270 60404366 -61439490 - B2_Mm2 SINE B2 -98 97 1 8 1045 200 175 110 0 chr11 60404410 60404482 -61439374 + MIRc SINE MIR 61 148 -120 8 1045 790 188 7 0 chr11 60404501 60404639 -61439217 + B1_Mus1 SINE Alu 8 146 -2 8 1045 398 285 61 96 chr11 60404503 60404701 -61439155 + B4 SINE B4 94 284 -8 8 1045 441 322 38 44 chr11 60404954 60405113 -61438743 + RSINE1 SINE B4 2 159 -6 8 1045 1067 119 26 36 chr11 60405746 60405938 -61437918 - B2_Mm1a SINE B2 -2 191 2 8 1045 1088 131 23 6 chr11 60406531 60406708 -61437148 + B2_Mm2 SINE B2 10 189 -6 8 1045 2156 130 30 14 chr11 60406716 60407082 -61436774 + L1_Mus4 LINE L1 6259 6630 -6 8 1045 2798 146 82 11 chr11 60407095 60407616 -61436240 - RLTR31_Mm LTR ERVK -3 558 1 8 1045 212 369 0 0 chr11 60407639 60407704 -61436152 - ID SINE ID -158 66 2 8 1045 461 252 20 0 chr11 60407724 60407823 -61436033 - B1F SINE Alu -16 133 33 8 1045 1018 119 0 14 chr11 60407936 60408081 -61435775 + B1_Mus1 SINE Alu 5 147 -1 8 1045 224 59 29 0 chr11 60408082 60408116 -61435740 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1045 407 264 18 9 chr11 60408124 60408235 -61435621 + PB1D9 SINE Alu 2 113 -7 8 1045 436 254 50 42 chr11 60408248 60408367 -61435489 + PB1D7 SINE Alu 1 120 0 8 1045 258 150 24 36 chr11 60408449 60408532 -61435324 + CT-rich Low_complexity Low_complexity 5 86 0 8 1045 1073 88 105 6 chr11 60408576 60408747 -61435109 - B2_Mm2 SINE B2 -6 189 2 8 1045 367 346 60 8 chr11 60408852 60408986 -61434870 - MTE2b LTR MaLR -48 331 191 8 1045 721 163 0 65 chr11 60409014 60409094 -61434762 + B2_Mm2 SINE B2 1 77 -118 8 1045 3463 83 6 11 chr11 60409094 60409570 -61434286 - MT2C_Mm LTR ERVL -1 474 1 8 1045 721 163 0 65 chr11 60409570 60409627 -61434229 + B2_Mm2 SINE B2 78 129 -66 8 1045 414 204 0 0 chr11 60409658 60409766 -61434090 + GA-rich Low_complexity Low_complexity 1 108 0 8 1045 659 195 55 44 chr11 60409778 60409960 -61433896 - B2_Mm2 SINE B2 -9 186 3 8 1045 21 0 0 0 chr11 60410056 60410077 -61433779 + AT_rich Low_complexity Low_complexity 1 21 0 8 1045 373 191 19 13 chr11 60410097 60410189 -61433667 + B1_Mur4 SINE Alu 31 150 0 8 1045 1868 202 18 91 chr11 60410223 60410296 -61433560 + MTC LTR MaLR 1 76 -345 8 1045 834 171 14 0 chr11 60410296 60410442 -61433414 + B1_Mus1 SINE Alu 1 148 0 8 1045 1868 202 18 91 chr11 60410442 60410593 -61433263 + MTC LTR MaLR 77 205 -216 8 1045 661 158 86 93 chr11 60410593 60410646 -61433210 + B1_Mus2 SINE Alu 3 55 -92 8 1045 1377 99 10 5 chr11 60410646 60410838 -61433018 + B2_Mm2 SINE B2 1 193 -2 8 1045 661 158 86 93 chr11 60410838 60410924 -61432932 + B1_Mus2 SINE Alu 56 141 -6 8 1045 781 62 9 9 chr11 60410926 60411039 -61432817 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 8 1045 1868 202 18 91 chr11 60411039 60411262 -61432594 + MTC LTR MaLR 206 419 -2 8 1045 462 295 20 48 chr11 60411262 60411408 -61432448 + ID_B1 SINE B4 6 147 -77 8 1045 423 276 134 0 chr11 60411736 60411863 -61431993 - B3 SINE B2 -10 206 63 8 1045 660 243 17 142 chr11 60411941 60412181 -61431675 + B3A SINE B2 6 215 -1 8 1045 795 132 0 23 chr11 60412285 60412417 -61431439 - B1_Mus1 SINE Alu 0 148 20 8 1045 367 206 25 123 chr11 60412323 60412445 -61431411 - MT2B LTR ERVL -337 264 155 8 1045 647 246 0 0 chr11 60412462 60412592 -61431264 + B1_Mus2 SINE Alu 14 143 -4 8 1045 225 0 0 0 chr11 60412592 60412617 -61431239 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 8 1045 375 224 71 0 chr11 60412665 60412750 -61431106 + RMER10A LTR ERVL 1 91 -351 8 1045 651 222 62 66 chr11 60412753 60412980 -61430876 + RMER10A LTR ERVL 205 430 -12 8 1045 273 279 59 79 chr11 60413049 60413150 -61430706 + PB1D10 SINE Alu 19 117 0 8 1045 350 256 188 0 chr11 60413170 60413287 -61430569 + B1_Mur1 SINE Alu 4 142 -7 8 1045 378 0 0 0 chr11 60413357 60413399 -61430457 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 1045 204 40 0 0 chr11 60413399 60413423 -61430433 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1045 532 167 10 0 chr11 60413474 60413570 -61430286 - B2_Mm2 SINE B2 -98 97 1 9 1045 784 188 7 0 chr11 60413705 60413843 -61430013 + B1_Mus1 SINE Alu 8 146 -2 9 1045 180 182 30 0 chr11 60413970 60414003 -61429853 - MIRc SINE MIR -113 155 122 9 1045 452 322 25 44 chr11 60414159 60414318 -61429538 + RSINE1 SINE B4 2 157 -8 9 1045 1067 119 26 36 chr11 60414952 60415144 -61428712 - B2_Mm1a SINE B2 -2 191 2 9 1045 1093 131 28 6 chr11 60415735 60415912 -61427944 + B2_Mm2 SINE B2 10 190 -5 9 1045 2107 138 30 14 chr11 60415920 60416286 -61427570 + L1_Mus4 LINE L1 6259 6630 -6 9 1045 2798 146 82 11 chr11 60416299 60416820 -61427036 - RLTR31_Mm LTR ERVK -3 558 1 9 1045 212 369 0 0 chr11 60416843 60416908 -61426948 - ID SINE ID -158 66 2 9 1045 461 252 20 0 chr11 60416928 60417027 -61426829 - B1F SINE Alu -16 133 33 9 1045 1018 119 0 14 chr11 60417140 60417285 -61426571 + B1_Mus1 SINE Alu 5 147 -1 9 1045 224 59 29 0 chr11 60417286 60417320 -61426536 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1045 435 255 18 9 chr11 60417328 60417439 -61426417 + PB1D9 SINE Alu 2 113 -7 9 1045 436 254 50 42 chr11 60417452 60417571 -61426285 + PB1D7 SINE Alu 1 120 0 9 1045 258 150 24 36 chr11 60417653 60417736 -61426120 + CT-rich Low_complexity Low_complexity 5 86 0 9 1045 1073 88 105 6 chr11 60417780 60417951 -61425905 - B2_Mm2 SINE B2 -6 189 2 9 1045 357 343 56 14 chr11 60418056 60418198 -61425658 - MTE2b LTR MaLR -48 331 184 9 1045 721 163 0 65 chr11 60418218 60418298 -61425558 + B2_Mm2 SINE B2 1 77 -118 9 1045 3375 87 8 11 chr11 60418298 60418773 -61425083 - MT2C_Mm LTR ERVL -1 474 1 9 1045 721 163 0 65 chr11 60418773 60418830 -61425026 + B2_Mm2 SINE B2 78 129 -66 9 1045 414 204 0 0 chr11 60418861 60418969 -61424887 + GA-rich Low_complexity Low_complexity 1 108 0 9 1045 659 195 55 44 chr11 60418981 60419163 -61424693 - B2_Mm2 SINE B2 -9 186 3 9 1045 373 191 19 13 chr11 60419299 60419391 -61424465 + B1_Mur4 SINE Alu 31 150 0 9 1045 1852 204 18 91 chr11 60419425 60419498 -61424358 + MTC LTR MaLR 1 76 -345 9 1045 834 171 14 0 chr11 60419498 60419644 -61424212 + B1_Mus1 SINE Alu 1 148 0 9 1045 1852 204 18 91 chr11 60419644 60419795 -61424061 + MTC LTR MaLR 77 205 -216 9 1045 661 158 86 93 chr11 60419795 60419848 -61424008 + B1_Mus2 SINE Alu 3 55 -92 9 1045 1377 99 10 5 chr11 60419848 60420040 -61423816 + B2_Mm2 SINE B2 1 193 -2 9 1045 661 158 86 93 chr11 60420040 60420126 -61423730 + B1_Mus2 SINE Alu 56 141 -6 9 1045 781 62 9 9 chr11 60420128 60420241 -61423615 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 9 1045 1852 204 18 91 chr11 60420241 60420464 -61423392 + MTC LTR MaLR 206 419 -2 9 1045 462 295 20 48 chr11 60420464 60420610 -61423246 + ID_B1 SINE B4 6 147 -77 9 1045 423 276 134 0 chr11 60420938 60421065 -61422791 - B3 SINE B2 -10 206 63 9 1045 660 243 17 142 chr11 60421143 60421383 -61422473 + B3A SINE B2 6 215 -1 9 1045 795 132 0 23 chr11 60421487 60421619 -61422237 - B1_Mus1 SINE Alu 0 148 20 9 1045 367 206 25 123 chr11 60421525 60421647 -61422209 - MT2B LTR ERVL -337 264 155 9 1045 647 246 0 0 chr11 60421664 60421794 -61422062 + B1_Mus2 SINE Alu 14 143 -4 9 1045 297 0 0 0 chr11 60421794 60421827 -61422029 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 9 1045 375 224 71 0 chr11 60421875 60421960 -61421896 + RMER10A LTR ERVL 1 91 -351 9 1045 669 217 62 66 chr11 60421963 60422190 -61421666 + RMER10A LTR ERVL 205 430 -12 9 1045 273 279 59 79 chr11 60422260 60422361 -61421495 + PB1D10 SINE Alu 19 117 0 9 1045 350 256 188 0 chr11 60422381 60422498 -61421358 + B1_Mur1 SINE Alu 4 142 -7 9 1045 360 0 0 0 chr11 60422568 60422608 -61421248 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1045 204 40 0 0 chr11 60422608 60422632 -61421224 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1045 532 167 10 0 chr11 60422683 60422779 -61421077 - B2_Mm2 SINE B2 -98 97 1 9 1045 790 188 7 0 chr11 60422914 60423052 -61420804 + B1_Mus1 SINE Alu 8 146 -2 9 1045 180 182 30 0 chr11 60423179 60423212 -61420644 - MIRc SINE MIR -113 155 122 9 1045 452 322 25 44 chr11 60423368 60423527 -61420329 + RSINE1 SINE B4 2 157 -8 9 130 1067 119 26 36 chr11 60424161 60424353 -61419503 - B2_Mm1a SINE B2 -2 191 2 9 1046 1088 131 23 6 chr11 60424945 60425122 -61418734 + B2_Mm2 SINE B2 10 189 -6 9 1046 2109 136 30 14 chr11 60425130 60425496 -61418360 + L1_Mus4 LINE L1 6259 6630 -6 9 1046 2798 146 82 11 chr11 60425509 60426030 -61417826 - RLTR31_Mm LTR ERVK -3 558 1 9 1046 212 369 0 0 chr11 60426053 60426118 -61417738 - ID SINE ID -158 66 2 9 1046 461 252 20 0 chr11 60426138 60426237 -61417619 - B1F SINE Alu -16 133 33 9 1046 1018 119 0 14 chr11 60426350 60426495 -61417361 + B1_Mus1 SINE Alu 5 147 -1 9 1046 224 59 29 0 chr11 60426496 60426530 -61417326 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1046 435 255 18 9 chr11 60426538 60426649 -61417207 + PB1D9 SINE Alu 2 113 -7 9 1046 436 254 50 42 chr11 60426662 60426781 -61417075 + PB1D7 SINE Alu 1 120 0 9 1046 258 150 24 36 chr11 60426863 60426946 -61416910 + CT-rich Low_complexity Low_complexity 5 86 0 9 1046 1073 88 105 6 chr11 60426990 60427161 -61416695 - B2_Mm2 SINE B2 -6 189 2 9 1046 357 343 56 14 chr11 60427266 60427408 -61416448 - MTE2b LTR MaLR -48 331 184 9 1046 721 163 0 65 chr11 60427428 60427508 -61416348 + B2_Mm2 SINE B2 1 77 -118 9 1046 3375 87 8 11 chr11 60427508 60427983 -61415873 - MT2C_Mm LTR ERVL -1 474 1 9 1046 721 163 0 65 chr11 60427983 60428040 -61415816 + B2_Mm2 SINE B2 78 129 -66 9 1046 414 204 0 0 chr11 60428071 60428179 -61415677 + GA-rich Low_complexity Low_complexity 1 108 0 9 1046 659 195 55 44 chr11 60428191 60428373 -61415483 - B2_Mm2 SINE B2 -9 186 3 9 1046 373 191 19 13 chr11 60428509 60428601 -61415255 + B1_Mur4 SINE Alu 31 150 0 9 1046 1852 204 18 91 chr11 60428635 60428708 -61415148 + MTC LTR MaLR 1 76 -345 9 1046 834 171 14 0 chr11 60428708 60428854 -61415002 + B1_Mus1 SINE Alu 1 148 0 9 1046 1852 204 18 91 chr11 60428854 60429005 -61414851 + MTC LTR MaLR 77 205 -216 9 1046 661 158 86 93 chr11 60429005 60429058 -61414798 + B1_Mus2 SINE Alu 3 55 -92 9 1046 1377 99 10 5 chr11 60429058 60429250 -61414606 + B2_Mm2 SINE B2 1 193 -2 9 1046 661 158 86 93 chr11 60429250 60429336 -61414520 + B1_Mus2 SINE Alu 56 141 -6 9 1046 781 62 9 9 chr11 60429338 60429451 -61414405 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 9 1046 1852 204 18 91 chr11 60429451 60429674 -61414182 + MTC LTR MaLR 206 419 -2 9 1046 462 295 20 48 chr11 60429674 60429820 -61414036 + ID_B1 SINE B4 6 147 -77 9 1046 423 276 134 0 chr11 60430148 60430275 -61413581 - B3 SINE B2 -10 206 63 9 1046 660 243 17 142 chr11 60430353 60430593 -61413263 + B3A SINE B2 6 215 -1 9 1046 795 132 0 23 chr11 60430697 60430829 -61413027 - B1_Mus1 SINE Alu 0 148 20 9 1046 367 206 25 123 chr11 60430735 60430857 -61412999 - MT2B LTR ERVL -337 264 155 9 1046 647 246 0 0 chr11 60430874 60431004 -61412852 + B1_Mus2 SINE Alu 14 143 -4 9 1046 297 0 0 0 chr11 60431004 60431037 -61412819 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 9 1046 375 224 71 0 chr11 60431085 60431170 -61412686 + RMER10A LTR ERVL 1 91 -351 9 1046 669 217 62 66 chr11 60431173 60431400 -61412456 + RMER10A LTR ERVL 205 430 -12 9 1046 273 279 59 79 chr11 60431470 60431571 -61412285 + PB1D10 SINE Alu 19 117 0 9 1046 350 256 188 0 chr11 60431591 60431708 -61412148 + B1_Mur1 SINE Alu 4 142 -7 9 1046 360 0 0 0 chr11 60431778 60431818 -61412038 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1046 204 40 0 0 chr11 60431818 60431842 -61412014 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1046 532 167 10 0 chr11 60431893 60431989 -61411867 - B2_Mm2 SINE B2 -98 97 1 9 1046 790 188 7 0 chr11 60432124 60432262 -61411594 + B1_Mus1 SINE Alu 8 146 -2 9 1046 180 182 30 0 chr11 60432389 60432422 -61411434 - MIRc SINE MIR -113 155 122 9 1046 452 322 25 44 chr11 60432578 60432737 -61411119 + RSINE1 SINE B4 2 157 -8 9 1046 1069 124 26 31 chr11 60433371 60433562 -61410294 - B2_Mm1a SINE B2 -2 191 2 9 1046 1088 131 23 6 chr11 60434155 60434332 -61409524 + B2_Mm2 SINE B2 10 189 -6 9 1046 2140 133 30 14 chr11 60434340 60434706 -61409150 + L1_Mus4 LINE L1 6259 6630 -6 9 1046 2798 146 82 11 chr11 60434719 60435240 -61408616 - RLTR31_Mm LTR ERVK -3 558 1 9 1046 212 369 0 0 chr11 60435263 60435328 -61408528 - ID SINE ID -158 66 2 9 1046 461 252 20 0 chr11 60435348 60435447 -61408409 - B1F SINE Alu -16 133 33 9 1046 1018 119 0 14 chr11 60435560 60435705 -61408151 + B1_Mus1 SINE Alu 5 147 -1 9 1046 224 59 29 0 chr11 60435706 60435740 -61408116 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1046 435 255 18 9 chr11 60435748 60435859 -61407997 + PB1D9 SINE Alu 2 113 -7 9 1046 436 254 50 42 chr11 60435872 60435991 -61407865 + PB1D7 SINE Alu 1 120 0 9 1046 258 150 24 36 chr11 60436073 60436156 -61407700 + CT-rich Low_complexity Low_complexity 5 86 0 9 1046 1073 88 105 6 chr11 60436200 60436371 -61407485 - B2_Mm2 SINE B2 -6 189 2 9 1046 357 343 56 14 chr11 60436476 60436618 -61407238 - MTE2b LTR MaLR -48 331 184 9 1046 721 163 0 65 chr11 60436638 60436718 -61407138 + B2_Mm2 SINE B2 1 77 -118 9 1046 3463 83 6 11 chr11 60436718 60437194 -61406662 - MT2C_Mm LTR ERVL -1 474 1 9 1046 721 163 0 65 chr11 60437194 60437251 -61406605 + B2_Mm2 SINE B2 78 129 -66 9 1046 414 204 0 0 chr11 60437282 60437390 -61406466 + GA-rich Low_complexity Low_complexity 1 108 0 9 1046 659 195 55 44 chr11 60437402 60437584 -61406272 - B2_Mm2 SINE B2 -9 186 3 9 1046 373 191 19 13 chr11 60437720 60437812 -61406044 + B1_Mur4 SINE Alu 31 150 0 1 1046 1863 202 18 91 chr11 60437846 60437919 -61405937 + MTC LTR MaLR 1 76 -345 1 1046 834 171 14 0 chr11 60437919 60438065 -61405791 + B1_Mus1 SINE Alu 1 148 0 1 1046 1863 202 18 91 chr11 60438065 60438216 -61405640 + MTC LTR MaLR 77 205 -216 1 1046 661 158 86 93 chr11 60438216 60438269 -61405587 + B1_Mus2 SINE Alu 3 55 -92 1 1046 1356 105 5 5 chr11 60438269 60438461 -61405395 + B2_Mm2 SINE B2 1 192 -3 1 1046 661 158 86 93 chr11 60438461 60438547 -61405309 + B1_Mus2 SINE Alu 56 141 -6 1 1046 1006 70 7 7 chr11 60438549 60438694 -61405162 + (GAAA)n Simple_repeat Simple_repeat 4 148 0 1 1046 1863 202 18 91 chr11 60438694 60438917 -61404939 + MTC LTR MaLR 206 419 -2 1 1046 459 295 20 48 chr11 60438917 60439063 -61404793 + ID_B1 SINE B4 6 147 -77 1 1046 453 260 134 0 chr11 60439391 60439518 -61404338 - B3 SINE B2 -10 206 63 1 1046 660 243 17 142 chr11 60439596 60439836 -61404020 + B3A SINE B2 6 215 -1 1 1046 795 132 0 23 chr11 60439940 60440072 -61403784 - B1_Mus1 SINE Alu 0 148 20 1 1046 367 206 25 123 chr11 60439978 60440100 -61403756 - MT2B LTR ERVL -337 264 155 1 1046 647 246 0 0 chr11 60440117 60440247 -61403609 + B1_Mus2 SINE Alu 14 143 -4 1 1046 225 0 0 0 chr11 60440247 60440272 -61403584 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1046 375 224 71 0 chr11 60440320 60440405 -61403451 + RMER10A LTR ERVL 1 91 -351 1 1046 669 217 62 66 chr11 60440408 60440635 -61403221 + RMER10A LTR ERVL 205 430 -12 1 1046 273 279 59 79 chr11 60440704 60440805 -61403051 + PB1D10 SINE Alu 19 117 0 1 1046 350 256 188 0 chr11 60440825 60440942 -61402914 + B1_Mur1 SINE Alu 4 142 -7 1 1046 396 0 0 0 chr11 60441012 60441056 -61402800 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1046 204 40 0 0 chr11 60441056 60441080 -61402776 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1046 532 167 10 0 chr11 60441131 60441227 -61402629 - B2_Mm2 SINE B2 -98 97 1 1 1046 784 188 7 0 chr11 60441362 60441500 -61402356 + B1_Mus1 SINE Alu 8 146 -2 1 1046 180 182 30 0 chr11 60441627 60441660 -61402196 - MIRc SINE MIR -113 155 122 1 1046 452 322 25 44 chr11 60441816 60441975 -61401881 + RSINE1 SINE B4 2 157 -8 1 1046 1071 122 21 31 chr11 60442606 60442800 -61401056 - B2_Mm1a SINE B2 -1 192 1 1 1046 204 193 110 0 chr11 60442840 60442912 -61400944 + MIRc SINE MIR 61 148 -120 1 1046 856 167 7 0 chr11 60442931 60443069 -61400787 + B1_Mus1 SINE Alu 8 146 -2 1 1046 301 58 39 0 chr11 60443071 60443123 -61400733 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1046 1072 118 21 36 chr11 60443345 60443539 -61400317 - B2_Mm1a SINE B2 -2 191 1 1 1046 639 140 10 0 chr11 60444129 60444229 -61399627 + B2_Mm2 SINE B2 10 110 -85 1 1046 338 331 50 35 chr11 60447108 60447249 -61396607 - L1M5 LINE L1 -2976 3170 3028 1 1046 491 100 41 82 chr11 60447306 60447404 -61396452 + B2_Mm2 SINE B2 95 188 -7 1 1046 2030 145 39 0 chr11 60447412 60447771 -61396085 + L1_Mus4 LINE L1 6259 6631 -5 1 1046 2796 148 89 8 chr11 60447784 60448300 -61395556 - RLTR31_Mm LTR ERVK -3 558 1 1 1046 224 333 107 0 chr11 60448304 60448388 -61395468 - ID_B1 SINE B4 -130 94 2 1 1046 443 263 20 0 chr11 60448408 60448507 -61395349 - B1F SINE Alu -16 133 33 1 1046 266 218 86 65 chr11 60448431 60448524 -61395332 - MT2B2 LTR ERVL -321 263 169 1 1046 1058 76 0 0 chr11 60448620 60448751 -61395105 + B1_Mus1 SINE Alu 5 135 -13 1 1046 288 0 0 0 chr11 60448753 60448785 -61395071 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1046 407 237 8 41 chr11 60448792 60448915 -61394941 + PB1D9 SINE Alu 2 120 0 1 1046 423 254 50 42 chr11 60448918 60449037 -61394819 + PB1D7 SINE Alu 1 120 0 1 1046 236 164 33 0 chr11 60449119 60449180 -61394676 + CT-rich Low_complexity Low_complexity 6 68 0 1 1046 1061 78 107 6 chr11 60449248 60449416 -61394440 - B2_Mm2 SINE B2 -9 186 2 1 1046 235 268 18 0 chr11 60449417 60449473 -61394383 - PB1 SINE Alu -42 85 29 1 1046 340 350 56 14 chr11 60449521 60449663 -61394193 - MTE2b LTR MaLR -48 331 184 1 1046 725 155 0 65 chr11 60449683 60449763 -61394093 + B2_Mm2 SINE B2 1 77 -118 1 1046 3404 81 11 8 chr11 60449763 60450236 -61393620 - MT2C_Mm LTR ERVL -1 474 1 1 1046 725 155 0 65 chr11 60450236 60450293 -61393563 + B2_Mm2 SINE B2 78 129 -66 1 1046 342 173 0 0 chr11 60450323 60450398 -61393458 + GA-rich Low_complexity Low_complexity 2 76 0 1 1046 661 202 33 22 chr11 60450410 60450592 -61393264 - B2_Mm2 SINE B2 -9 186 3 1 1046 360 0 0 0 chr11 60450610 60450650 -61393206 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1046 440 139 19 25 chr11 60450671 60450764 -61393092 + B1_Mur4 SINE Alu 31 150 0 1 1046 1837 199 18 97 chr11 60450806 60450880 -61392976 + MTC LTR MaLR 1 79 -342 1 1046 1060 102 7 0 chr11 60450880 60451027 -61392829 + B1_Mus1 SINE Alu 1 148 0 1 1046 1837 199 18 97 chr11 60451027 60451040 -61392816 + MTC LTR MaLR 80 89 -332 1 1046 4116 91 25 32 chr11 60451040 60451631 -61392225 + LTRIS_Mus LTR ERV1 1 587 0 1 1046 1837 199 18 97 chr11 60451631 60451771 -61392085 + MTC LTR MaLR 90 207 -214 1 1046 767 150 68 0 chr11 60451771 60451904 -61391952 + B1_Mus2 SINE Alu 3 144 -3 1 1046 1069 95 12 6 chr11 60451906 60452075 -61391781 + (GAAA)n Simple_repeat Simple_repeat 2 171 0 1 1046 1837 199 18 97 chr11 60452075 60452297 -61391559 + MTC LTR MaLR 208 419 -2 1 1046 434 297 94 52 chr11 60452293 60452506 -61391350 + ID_B1 SINE B4 2 223 -1 1 1046 640 214 0 90 chr11 60452927 60453071 -61390785 + B3A SINE B2 6 136 -62 1 1046 315 221 24 181 chr11 60453199 60453256 -61390600 + PB1 SINE Alu 19 66 -61 1 1046 1489 47 0 94 chr11 60453256 60453469 -61390387 - B2_Mm1a SINE B2 0 193 1 1 1046 315 221 24 181 chr11 60453469 60453538 -61390318 + PB1 SINE Alu 67 125 -2 1 1046 34 65 0 0 chr11 60453685 60453747 -61390109 + AT_rich Low_complexity Low_complexity 1 62 0 1 1046 582 74 5 12 chr11 60453767 60453875 -61389981 - B2_Mm2 SINE B2 -107 109 6 1 1046 1456 73 11 0 chr11 60453879 60454070 -61389786 - B2_Mm1t SINE B2 0 193 1 1 1046 297 289 202 0 chr11 60454159 60454273 -61389583 + B1_Mur1 SINE Alu 4 140 -9 1 1046 23 33 0 0 chr11 60454286 60454316 -61389540 + AT_rich Low_complexity Low_complexity 1 30 0 1 1046 587 135 10 0 chr11 60454410 60454506 -61389350 - B2_Mm2 SINE B2 -98 97 1 1 1046 200 175 110 0 chr11 60454550 60454622 -61389234 + MIRc SINE MIR 61 148 -120 1 1046 790 188 7 0 chr11 60454641 60454779 -61389077 + B1_Mus1 SINE Alu 8 146 -2 1 1046 398 285 61 96 chr11 60454643 60454841 -61389015 + B4 SINE B4 94 284 -8 1 1046 180 182 30 0 chr11 60454906 60454939 -61388917 - MIRc SINE MIR -113 155 122 1 1046 452 322 25 44 chr11 60455094 60455253 -61388603 + RSINE1 SINE B4 2 157 -8 1 1046 1067 119 26 36 chr11 60455886 60456078 -61387778 - B2_Mm1a SINE B2 -2 191 2 1 1046 1088 131 23 6 chr11 60456670 60456847 -61387009 + B2_Mm2 SINE B2 10 189 -6 1 1046 2109 136 30 14 chr11 60456855 60457221 -61386635 + L1_Mus4 LINE L1 6259 6630 -6 1 1046 2798 146 82 11 chr11 60457234 60457755 -61386101 - RLTR31_Mm LTR ERVK -3 558 1 1 1046 212 369 0 0 chr11 60457778 60457843 -61386013 - ID SINE ID -158 66 2 1 1046 461 252 20 0 chr11 60457863 60457962 -61385894 - B1F SINE Alu -16 133 33 1 1046 1018 119 0 14 chr11 60458075 60458220 -61385636 + B1_Mus1 SINE Alu 5 147 -1 1 1046 224 59 29 0 chr11 60458221 60458255 -61385601 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1046 375 275 18 9 chr11 60458263 60458373 -61385483 + PB1D9 SINE Alu 2 112 -8 1 1046 436 254 50 42 chr11 60458386 60458505 -61385351 + PB1D7 SINE Alu 1 120 0 1 1046 258 150 24 36 chr11 60458587 60458670 -61385186 + CT-rich Low_complexity Low_complexity 5 86 0 1 1046 1065 89 106 6 chr11 60458714 60458884 -61384972 - B2_Mm2 SINE B2 -7 188 2 1 1046 368 338 57 14 chr11 60458990 60459131 -61384725 - MTE2b LTR MaLR -49 330 184 1 1046 721 163 0 65 chr11 60459151 60459231 -61384625 + B2_Mm2 SINE B2 1 77 -118 1 1046 3463 83 6 11 chr11 60459231 60459707 -61384149 - MT2C_Mm LTR ERVL -1 474 1 1 1046 721 163 0 65 chr11 60459707 60459764 -61384092 + B2_Mm2 SINE B2 78 129 -66 1 1046 414 204 0 0 chr11 60459795 60459903 -61383953 + GA-rich Low_complexity Low_complexity 1 108 0 1 1046 642 201 55 44 chr11 60459915 60460097 -61383759 - B2_Mm2 SINE B2 -9 186 3 1 1046 21 0 0 0 chr11 60460194 60460215 -61383641 + AT_rich Low_complexity Low_complexity 1 21 0 1 1046 377 158 18 64 chr11 60460235 60460332 -61383524 + B1_Mus2 SINE Alu 31 147 0 1 1046 1841 204 18 91 chr11 60460365 60460438 -61383418 + MTC LTR MaLR 1 76 -345 1 1046 919 144 14 0 chr11 60460438 60460584 -61383272 + B1_Mus1 SINE Alu 1 148 0 1 1046 1841 204 18 91 chr11 60460584 60460735 -61383121 + MTC LTR MaLR 77 205 -216 1 1046 661 158 86 93 chr11 60460735 60460788 -61383068 + B1_Mus2 SINE Alu 3 55 -92 1 1046 1377 99 10 5 chr11 60460788 60460980 -61382876 + B2_Mm2 SINE B2 1 193 -2 1 1046 661 158 86 93 chr11 60460980 60461066 -61382790 + B1_Mus2 SINE Alu 56 141 -6 1 1046 910 48 8 8 chr11 60461068 60461193 -61382663 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 1 1046 1841 204 18 91 chr11 60461193 60461416 -61382440 + MTC LTR MaLR 206 419 -2 1 1046 462 295 20 48 chr11 60461416 60461562 -61382294 + ID_B1 SINE B4 6 147 -77 1 1046 453 260 134 0 chr11 60461890 60462017 -61381839 - B3 SINE B2 -10 206 63 1 1046 660 243 17 142 chr11 60462095 60462335 -61381521 + B3A SINE B2 6 215 -1 1 1046 795 132 0 23 chr11 60462439 60462571 -61381285 - B1_Mus1 SINE Alu 0 148 20 1 1046 367 206 25 123 chr11 60462477 60462599 -61381257 - MT2B LTR ERVL -337 264 155 1 1046 647 246 0 0 chr11 60462616 60462746 -61381110 + B1_Mus2 SINE Alu 14 143 -4 1 1046 189 0 0 0 chr11 60462746 60462767 -61381089 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1046 375 224 71 0 chr11 60462815 60462900 -61380956 + RMER10A LTR ERVL 1 91 -351 1 1046 669 217 62 66 chr11 60462903 60463130 -61380726 + RMER10A LTR ERVL 205 430 -12 1 1046 254 290 59 79 chr11 60463199 60463300 -61380556 + PB1D10 SINE Alu 19 117 0 1 1046 350 256 188 0 chr11 60463320 60463437 -61380419 + B1_Mur1 SINE Alu 4 142 -7 1 1046 378 0 0 0 chr11 60463507 60463549 -61380307 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1046 532 167 10 0 chr11 60463618 60463714 -61380142 - B2_Mm2 SINE B2 -98 97 1 1 1046 790 188 7 0 chr11 60463849 60463987 -61379869 + B1_Mus1 SINE Alu 8 146 -2 1 1046 400 282 61 97 chr11 60463851 60464047 -61379809 + B4 SINE B4 94 282 -10 1 1046 452 322 25 44 chr11 60464303 60464462 -61379394 + RSINE1 SINE B4 2 157 -8 1 1046 4422 20 2 0 chr11 60464779 60465271 -61378585 - MT2_Mm LTR ERVL 0 493 1 1 1046 319 0 0 0 chr11 60465271 60465309 -61378547 - MERVL-int LTR ERVL 0 5485 5448 1 1046 412 123 13 40 chr11 60465309 60465385 -61378471 - ORR1A3-int LTR MaLR -1323 640 567 1 1046 47843 16 14 1 chr11 60465385 60470688 -61373168 - MERVL-int LTR ERVL -114 5371 1 1 1046 4388 22 2 0 chr11 60470688 60471180 -61372676 - MT2_Mm LTR ERVL 0 493 1 1 1046 1069 124 26 31 chr11 60471501 60471692 -61372164 - B2_Mm1a SINE B2 -2 191 2 1 1046 1093 131 17 6 chr11 60472284 60472461 -61371395 + B2_Mm2 SINE B2 10 188 -7 1 1046 2107 136 30 14 chr11 60472469 60472835 -61371021 + L1_Mus4 LINE L1 6259 6630 -6 1 1046 2771 140 84 13 chr11 60472848 60473369 -61370487 - RLTR31_Mm LTR ERVK -3 558 1 1 1046 212 369 0 0 chr11 60473392 60473457 -61370399 - ID SINE ID -158 66 2 1 1046 461 252 20 0 chr11 60473477 60473576 -61370280 - B1F SINE Alu -16 133 33 1 1046 1018 119 0 14 chr11 60473689 60473834 -61370022 + B1_Mus1 SINE Alu 5 147 -1 1 1046 224 59 29 0 chr11 60473835 60473869 -61369987 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1046 422 277 0 9 chr11 60473877 60473990 -61369866 + PB1D9 SINE Alu 2 113 -7 1 1046 436 254 50 42 chr11 60474003 60474122 -61369734 + PB1D7 SINE Alu 1 120 0 1 1046 237 162 24 36 chr11 60474204 60474287 -61369569 + CT-rich Low_complexity Low_complexity 5 86 0 1 1046 1073 88 105 6 chr11 60474331 60474502 -61369354 - B2_Mm2 SINE B2 -6 189 2 1 1046 367 346 60 8 chr11 60474607 60474741 -61369115 - MTE2b LTR MaLR -48 331 191 1 1046 730 155 0 65 chr11 60474769 60474849 -61369007 + B2_Mm2 SINE B2 1 77 -118 1 1046 3463 83 6 11 chr11 60474849 60475325 -61368531 - MT2C_Mm LTR ERVL -1 474 1 1 1046 730 155 0 65 chr11 60475325 60475382 -61368474 + B2_Mm2 SINE B2 78 129 -66 1 1046 371 194 10 0 chr11 60475413 60475516 -61368340 + GA-rich Low_complexity Low_complexity 1 104 0 1 1046 630 201 55 44 chr11 60475528 60475710 -61368146 - B2_Mm2 SINE B2 -9 186 3 1 1046 22 0 0 0 chr11 60475805 60475827 -61368029 + AT_rich Low_complexity Low_complexity 1 22 0 1 1046 377 158 18 64 chr11 60475847 60475944 -61367912 + B1_Mus2 SINE Alu 31 147 0 1 1046 1863 202 18 91 chr11 60475976 60476049 -61367807 + MTC LTR MaLR 1 76 -345 1 1046 926 137 14 0 chr11 60476049 60476195 -61367661 + B1_Mus1 SINE Alu 1 148 0 1 1046 1863 202 18 91 chr11 60476195 60476346 -61367510 + MTC LTR MaLR 77 205 -216 1 1046 661 158 86 93 chr11 60476346 60476399 -61367457 + B1_Mus2 SINE Alu 3 55 -92 1 1046 1377 99 10 5 chr11 60476399 60476591 -61367265 + B2_Mm2 SINE B2 1 193 -2 1 1046 661 158 86 93 chr11 60476591 60476677 -61367179 + B1_Mus2 SINE Alu 56 141 -6 1 1046 739 80 9 9 chr11 60476679 60476792 -61367064 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 1 1046 1863 202 18 91 chr11 60476792 60477015 -61366841 + MTC LTR MaLR 206 419 -2 1 1046 468 283 98 75 chr11 60477015 60477229 -61366627 + ID_B1 SINE B4 6 224 0 1 1046 453 260 134 0 chr11 60477489 60477616 -61366240 - B3 SINE B2 -10 206 63 1 1046 658 243 17 142 chr11 60477694 60477934 -61365922 + B3A SINE B2 6 215 -1 1 1046 795 132 0 23 chr11 60478038 60478170 -61365686 - B1_Mus1 SINE Alu 0 148 20 1 1046 367 206 25 123 chr11 60478076 60478198 -61365658 - MT2B LTR ERVL -337 264 155 1 1046 649 246 0 0 chr11 60478215 60478345 -61365511 + B1_Mus2 SINE Alu 14 143 -4 1 1046 192 40 0 0 chr11 60478345 60478370 -61365486 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1046 375 224 71 0 chr11 60478424 60478509 -61365347 + RMER10A LTR ERVL 1 91 -351 1 1046 651 222 62 66 chr11 60478512 60478739 -61365117 + RMER10A LTR ERVL 205 430 -12 1 1046 285 269 59 79 chr11 60478808 60478909 -61364947 + PB1D10 SINE Alu 19 117 0 1 1046 350 256 188 0 chr11 60478929 60479046 -61364810 + B1_Mur1 SINE Alu 4 142 -7 1 1046 396 0 0 0 chr11 60479116 60479160 -61364696 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1046 204 40 0 0 chr11 60479160 60479184 -61364672 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1046 532 167 10 0 chr11 60479235 60479331 -61364525 - B2_Mm2 SINE B2 -98 97 1 1 1046 784 188 7 0 chr11 60479466 60479604 -61364252 + B1_Mus1 SINE Alu 8 146 -2 1 1046 180 182 30 0 chr11 60479731 60479764 -61364092 - MIRc SINE MIR -113 155 122 1 1046 451 322 25 44 chr11 60479919 60480078 -61363778 + RSINE1 SINE B4 2 157 -8 1 1046 1071 122 21 31 chr11 60480708 60480902 -61362954 - B2_Mm1a SINE B2 -1 192 1 1 1046 204 193 110 0 chr11 60480943 60481015 -61362841 + MIRc SINE MIR 61 148 -120 1 1046 856 167 7 0 chr11 60481034 60481172 -61362684 + B1_Mus1 SINE Alu 8 146 -2 1 1046 244 48 48 0 chr11 60481174 60481216 -61362640 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1046 1089 112 21 36 chr11 60481438 60481632 -61362224 - B2_Mm1a SINE B2 -2 191 1 1 1046 639 140 10 0 chr11 60482222 60482322 -61361534 + B2_Mm2 SINE B2 10 110 -85 1 1046 337 276 161 23 chr11 60485214 60485344 -61358512 - L1MD LINE L1 -2971 3175 3028 1 1046 491 100 41 82 chr11 60485401 60485499 -61358357 + B2_Mm2 SINE B2 95 188 -7 1 1046 2207 130 33 0 chr11 60485507 60485868 -61357988 + L1_Mus4 LINE L1 6259 6631 -5 1 1046 2872 151 81 8 chr11 60485881 60486401 -61357455 - RLTR31_Mm LTR ERVK -3 558 1 1 1046 223 294 57 29 chr11 60486419 60486489 -61357367 - B4 SINE B4 -219 73 2 1 1046 442 263 20 0 chr11 60486509 60486608 -61357248 - B1F SINE Alu -16 133 33 1 1046 249 230 86 65 chr11 60486532 60486625 -61357231 - MT2B2 LTR ERVL -321 263 169 1 1046 217 175 25 0 chr11 60486678 60486718 -61357138 + B3A SINE B2 2 42 -156 1 1046 1039 97 0 0 chr11 60486721 60486855 -61357001 + B1_Mus1 SINE Alu 5 138 -10 1 1046 282 29 0 0 chr11 60486855 60486890 -61356966 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1046 409 262 9 19 chr11 60486905 60487010 -61356846 + PB1D9 SINE Alu 10 113 -7 1 1046 317 261 16 80 chr11 60487023 60487148 -61356708 + PB1D10 SINE Alu 1 117 0 1 1046 236 164 33 0 chr11 60487224 60487285 -61356571 + CT-rich Low_complexity Low_complexity 6 68 0 1 1046 970 102 107 6 chr11 60487353 60487521 -61356335 - B2_Mm2 SINE B2 -9 186 2 1 1046 243 256 18 4 chr11 60487522 60487595 -61356261 - PB1 SINE Alu -42 85 12 1 1046 347 339 62 8 chr11 60487626 60487754 -61356102 - MTE2b LTR MaLR -48 331 197 1 1046 695 178 0 65 chr11 60487788 60487868 -61355988 + B2_Mm2 SINE B2 1 77 -118 1 1046 3286 90 15 6 chr11 60487868 60488338 -61355518 - MT2C_Mm LTR ERVL -1 474 1 1 1046 695 178 0 65 chr11 60488338 60488395 -61355461 + B2_Mm2 SINE B2 78 129 -66 1 1046 978 144 0 0 chr11 60488426 60488606 -61355250 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1046 243 232 0 0 chr11 60488612 60488694 -61355162 + GA-rich Low_complexity Low_complexity 1 82 0 1 1046 764 212 22 0 chr11 60488704 60488888 -61354968 - B2_Mm2 SINE B2 -5 190 3 1 1046 180 0 0 0 chr11 60488905 60488925 -61354931 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1046 335 212 12 26 chr11 60488930 60489039 -61354817 + B1_Mur4 SINE Alu 46 150 0 1 1046 669 236 27 116 chr11 60489069 60489143 -61354713 + MTC LTR MaLR 1 76 -345 1 1046 856 158 14 0 chr11 60489143 60489289 -61354567 + B1_Mus1 SINE Alu 1 148 0 1 1046 669 234 31 158 chr11 60489289 60489441 -61354415 + MTC LTR MaLR 66 205 -216 1 1046 715 150 82 89 chr11 60489441 60489494 -61354362 + B1_Mus2 SINE Alu 3 55 -92 1 1046 1361 91 5 5 chr11 60489494 60489682 -61354174 + B2_Mm2 SINE B2 1 188 -7 1 1046 715 150 82 89 chr11 60489682 60489774 -61354082 + B1_Mus2 SINE Alu 56 147 0 1 1046 541 234 31 158 chr11 60489774 60489800 -61354056 + MTC LTR MaLR 193 220 -187 1 1046 261 83 0 0 chr11 60489800 60489836 -61354020 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 1 1046 1200 196 0 22 chr11 60489846 60490075 -61353781 + MTC LTR MaLR 196 419 -2 1 1046 467 289 83 64 chr11 60490071 60490289 -61353567 + ID_B1 SINE B4 2 223 -1 1 1046 441 268 134 0 chr11 60490546 60490673 -61353183 - B3 SINE B2 -10 206 63 1 1046 652 247 12 86 chr11 60490751 60490979 -61352877 + B3A SINE B2 6 216 0 1 1046 777 119 0 23 chr11 60491096 60491225 -61352631 - B1_Mus1 SINE Alu 0 148 23 1 1046 365 222 16 115 chr11 60491134 60491256 -61352600 - MT2B LTR ERVL -337 264 155 1 1046 601 250 8 0 chr11 60491273 60491405 -61352451 + B1_Mus2 SINE Alu 14 146 -1 1 1046 195 69 0 0 chr11 60491406 60491435 -61352421 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1046 347 247 71 0 chr11 60491482 60491567 -61352289 + RMER10A LTR ERVL 1 91 -351 1 1046 650 210 88 61 chr11 60491570 60491798 -61352058 + RMER10A LTR ERVL 205 438 -4 1 1046 218 290 59 79 chr11 60491865 60491966 -61351890 + PB1D10 SINE Alu 19 117 0 1 1046 236 369 0 75 chr11 60491986 60492106 -61351750 + PB1D9 SINE Alu 4 114 -6 1 1046 27 62 0 0 chr11 60492125 60492173 -61351683 + AT_rich Low_complexity Low_complexity 1 48 0 1 1046 180 0 0 0 chr11 60492176 60492196 -61351660 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1046 261 0 0 0 chr11 60492196 60492224 -61351632 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1046 583 117 32 11 chr11 60492275 60492370 -61351486 - B2_Mm2 SINE B2 -98 97 1 1 1046 190 193 110 0 chr11 60492411 60492483 -61351373 + MIRc SINE MIR 61 148 -120 1 1046 843 174 7 0 chr11 60492501 60492639 -61351217 + B1_Mus1 SINE Alu 8 146 -2 1 1046 190 146 98 0 chr11 60492743 60492784 -61351072 - MIRc SINE MIR -102 166 122 1 1046 452 322 25 44 chr11 60492939 60493098 -61350758 + RSINE1 SINE B4 2 157 -8 1 1046 1063 123 21 31 chr11 60493732 60493925 -61349931 - B2_Mm1a SINE B2 -2 191 1 1 1046 204 193 110 0 chr11 60493966 60494038 -61349818 + MIRc SINE MIR 61 148 -120 1 1046 856 167 7 0 chr11 60494057 60494195 -61349661 + B1_Mus1 SINE Alu 8 146 -2 1 1046 388 35 35 0 chr11 60494197 60494255 -61349601 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1046 1089 112 21 36 chr11 60494477 60494671 -61349185 - B2_Mm1a SINE B2 -2 191 1 1 1046 639 140 10 0 chr11 60495261 60495361 -61348495 + B2_Mm2 SINE B2 10 110 -85 1 1046 364 293 111 15 chr11 60498258 60498393 -61345463 - L1MD LINE L1 -2971 3175 3028 1 1046 478 111 41 82 chr11 60498450 60498548 -61345308 + B2_Mm2 SINE B2 95 188 -7 1 1046 2043 150 33 0 chr11 60498556 60498917 -61344939 + L1_Mus4 LINE L1 6259 6631 -5 1 1046 2807 153 81 8 chr11 60498930 60499450 -61344406 - RLTR31_Mm LTR ERVK -3 558 1 1 1046 236 354 0 0 chr11 60499473 60499538 -61344318 - ID SINE ID -158 66 2 1 1046 461 252 20 0 chr11 60499558 60499657 -61344199 - B1F SINE Alu -16 133 33 1 1046 266 218 86 65 chr11 60499581 60499674 -61344182 - MT2B2 LTR ERVL -321 263 169 1 1046 218 175 25 0 chr11 60499727 60499767 -61344089 + B3A SINE B2 2 42 -156 1 1046 1004 99 0 0 chr11 60499770 60499901 -61343955 + B1_Mus1 SINE Alu 5 135 -13 1 1046 288 0 0 0 chr11 60499903 60499935 -61343921 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1046 267 196 0 19 chr11 60499942 60499994 -61343862 + PB1D9 SINE Alu 2 52 -68 1 1046 393 269 33 42 chr11 60500067 60500187 -61343669 + PB1D7 SINE Alu 1 119 -1 1 1046 236 164 33 0 chr11 60500268 60500329 -61343527 + CT-rich Low_complexity Low_complexity 6 68 0 2 1046 1076 78 107 6 chr11 60500397 60500565 -61343291 - B2_Mm2 SINE B2 -9 186 2 3 1046 306 343 56 14 chr11 60500670 60500812 -61343044 - MTE2b LTR MaLR -48 331 184 4 1046 658 171 0 72 chr11 60500832 60500912 -61342944 + B2_Mm2 SINE B2 1 77 -118 5 1046 3426 90 11 4 chr11 60500912 60501382 -61342474 - MT2C_Mm LTR ERVL -1 474 2 6 1046 658 171 0 72 chr11 60501382 60501440 -61342416 + B2_Mm2 SINE B2 78 129 -66 5 1046 228 200 0 0 chr11 60501471 60501531 -61342325 + GA-rich Low_complexity Low_complexity 1 60 0 7 1046 735 211 33 11 chr11 60501543 60501725 -61342131 - B2_Mm2 SINE B2 -7 188 3 8 1046 198 0 0 0 chr11 60501744 60501766 -61342090 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1046 444 134 15 19 chr11 60501786 60501878 -61341978 + B1_Mur4 SINE Alu 31 150 0 1 1046 1774 205 11 104 chr11 60501920 60501994 -61341862 + MTC LTR MaLR 1 66 -355 1 1046 1050 109 7 0 chr11 60501994 60502141 -61341715 + B1_Mus1 SINE Alu 1 148 0 1 1046 1774 205 11 104 chr11 60502141 60502154 -61341702 + MTC LTR MaLR 67 79 -342 1 1046 4270 86 24 32 chr11 60502154 60502746 -61341110 + LTRIS_Mus LTR ERV1 1 587 0 1 1046 1774 205 11 104 chr11 60502746 60502886 -61340970 + MTC LTR MaLR 80 205 -216 1 1046 777 139 71 28 chr11 60502886 60503018 -61340838 + B1_Mur3 SINE Alu 3 142 -7 1 1046 1065 95 6 12 chr11 60503018 60503189 -61340667 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 1 1046 1774 205 11 104 chr11 60503197 60503429 -61340427 + MTC LTR MaLR 206 419 -2 1 1046 429 286 21 44 chr11 60503425 60503597 -61340259 + ID_B1 SINE B4 2 174 -118 1 1046 577 226 0 91 chr11 60504060 60504232 -61339624 + B3A SINE B2 6 160 -56 1 1046 1168 62 0 102 chr11 60504383 60504579 -61339277 - B2_Mm1a SINE B2 -2 191 16 1 1046 213 254 0 113 chr11 60504584 60504655 -61339201 + PB1 SINE Alu 64 126 -1 1 1046 284 299 197 0 chr11 60504674 60504791 -61339065 + B1_Mur1 SINE Alu 4 143 -6 2 1046 29 78 0 0 chr11 60504801 60504865 -61338991 + AT_rich Low_complexity Low_complexity 1 64 0 2 1046 562 28 0 0 chr11 60504894 60504966 -61338890 - B2_Mm2 SINE B2 -97 98 27 2 1046 1466 68 21 0 chr11 60504999 60505190 -61338666 - B2_Mm2 SINE B2 0 195 1 2 1046 261 217 193 0 chr11 60505209 60505292 -61338564 + MIRb SINE MIR 50 148 -120 2 1046 767 133 15 15 chr11 60505295 60505425 -61338431 + B1_Mur3 SINE Alu 18 147 -2 2 1046 423 368 7 7 chr11 60505733 60505886 -61337970 + RSINE1 SINE B4 11 163 -2 2 1046 1500 69 37 0 chr11 60505996 60506184 -61337672 - B2_Mm2 SINE B2 0 195 1 2 1046 1279 94 22 11 chr11 60506641 60506824 -61337032 + B2_Mm2 SINE B2 4 188 -7 2 1046 2221 122 18 3 chr11 60506852 60507189 -61336667 + L1_Mus4 LINE L1 6289 6630 -6 2 1046 2556 177 101 10 chr11 60507199 60507713 -61336143 - RLTR31_Mm LTR ERVK 0 561 1 3 1046 422 250 11 0 chr11 60507821 60507913 -61335943 - B1F SINE Alu -16 133 41 3 1046 297 239 120 34 chr11 60507830 60507947 -61335909 - ID_B1 SINE B4 -21 203 77 3 1046 863 136 53 8 chr11 60508029 60508162 -61335694 + B1_Mus1 SINE Alu 2 140 -8 3 1046 207 0 0 0 chr11 60508162 60508185 -61335671 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1046 451 274 0 34 chr11 60508198 60508315 -61335541 + PB1D9 SINE Alu 2 114 -6 3 1046 398 300 0 32 chr11 60508328 60508452 -61335404 + PB1D9 SINE Alu 1 120 0 3 1046 236 149 21 0 chr11 60508550 60508597 -61335259 + C-rich Low_complexity Low_complexity 1 48 0 3 1046 210 355 10 97 chr11 60508644 60508672 -61335184 - PB1 SINE Alu -22 105 83 3 1046 953 101 129 51 chr11 60508672 60508850 -61335006 - B2_Mm2 SINE B2 -2 193 2 3 1046 210 355 10 97 chr11 60508850 60508924 -61334932 - PB1 SINE Alu -45 82 12 3 1046 346 336 56 14 chr11 60508955 60509097 -61334759 - MTE2b LTR MaLR -48 331 184 4 1046 715 187 24 118 chr11 60509117 60509197 -61334659 + B2_Mm2 SINE B2 1 77 -118 4 1046 3709 72 2 19 chr11 60509197 60509679 -61334177 - MT2C_Mm LTR ERVL -1 474 1 4 1046 715 187 24 118 chr11 60509679 60509810 -61334046 + B2_Mm2 SINE B2 78 192 -3 4 1046 873 158 52 12 chr11 60509810 60509983 -61333873 - B2_Mm2 SINE B2 -14 181 2 4 1046 1019 84 0 0 chr11 60510001 60510143 -61333713 - B1_Mus1 SINE Alu 0 148 7 4 1046 261 0 0 0 chr11 60510161 60510190 -61333666 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1046 400 159 21 54 chr11 60510216 60510309 -61333547 + B1_Mur4 SINE Alu 60 149 -1 4 1046 323 176 73 0 chr11 60510353 60510421 -61333435 + MTC LTR MaLR 1 73 -348 4 1046 1187 88 0 0 chr11 60510428 60510576 -61333280 + B1_Mus1 SINE Alu 1 148 0 4 1046 697 126 72 0 chr11 60510604 60510767 -61333089 - B2_Mm2 SINE B2 0 193 2 4 1046 1139 140 21 11 chr11 60510778 60510966 -61332890 - B2_Mm2 SINE B2 -2 193 4 5 1046 1098 95 0 13 chr11 60511001 60511150 -61332706 + B1_Mus1 SINE Alu 2 148 0 5 1046 717 153 48 96 chr11 60511165 60511353 -61332503 - B2_Mm2 SINE B2 -14 181 3 5 1046 1123 87 124 0 chr11 60511413 60511574 -61332282 - B2_Mm2 SINE B2 -14 181 1 5 1046 1199 55 7 0 chr11 60511600 60511745 -61332111 - B1_Mus1 SINE Alu 0 148 3 5 1046 540 217 0 40 chr11 60512725 60512850 -61331006 - PB1D9 SINE Alu 0 120 1 5 1046 27 49 0 0 chr11 60513151 60513192 -61330664 + GC_rich Low_complexity Low_complexity 1 41 0 5 1046 23 0 0 0 chr11 60513445 60513468 -61330388 + GC_rich Low_complexity Low_complexity 1 23 0 5 1046 353 327 0 0 chr11 60515847 60515948 -61327908 - PB1D10 SINE Alu -7 110 10 5 1046 279 0 0 0 chr11 60516704 60516735 -61327121 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1046 368 274 12 0 chr11 60518825 60518909 -61324947 - PB1D7 SINE Alu -34 86 2 6 1046 626 204 66 0 chr11 60524399 60524536 -61319320 - B1_Mur2 SINE Alu -2 147 2 6 1046 213 121 0 0 chr11 60527521 60527554 -61316302 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1046 1186 68 0 7 chr11 60528241 60528389 -61315467 + B1_Mus1 SINE Alu 2 148 0 6 1046 263 342 0 0 chr11 60529708 60529819 -61314037 + CT-rich Low_complexity Low_complexity 1 111 0 6 1046 1191 61 0 0 chr11 60531231 60531378 -61312478 - B1_Mus1 SINE Alu 0 148 2 6 1046 1613 37 21 0 chr11 60531849 60532036 -61311820 - B2_Mm1a SINE B2 -1 192 2 6 1046 199 375 57 0 chr11 60535412 60535500 -61308356 + MIRb SINE MIR 50 142 -126 6 1046 439 250 16 74 chr11 60535566 60535687 -61308169 + B1F1 SINE Alu 23 136 -13 6 1046 314 226 34 45 chr11 60536296 60536472 -61307384 + (CCCTG)n Simple_repeat Simple_repeat 3 176 0 6 1046 900 122 63 28 chr11 60537264 60537407 -61306449 - B1_Mur2 SINE Alu 0 149 2 7 1046 245 351 10 31 chr11 60537447 60537481 -61306375 - MIR SINE MIR -151 111 77 7 1046 2074 179 30 8 chr11 60537481 60537847 -61306009 + ORR1D1 LTR MaLR 1 374 0 7 1046 245 351 10 31 chr11 60537847 60537909 -61305947 - MIR SINE MIR -186 76 17 7 1046 198 0 0 0 chr11 60539085 60539107 -61304749 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 7 1046 897 115 0 98 chr11 60539147 60539175 -61304681 - B1_Mur3 SINE Alu -1 148 123 7 1046 1208 152 0 5 chr11 60539175 60539367 -61304489 + B2_Mm2 SINE B2 1 191 -4 7 1046 897 115 0 98 chr11 60539367 60539502 -61304354 - B1_Mur3 SINE Alu -27 122 1 7 1046 818 152 8 0 chr11 60539531 60539663 -61304193 - B1_Mus1 SINE Alu -15 133 1 7 1046 840 175 0 27 chr11 60540015 60540162 -61303694 - B1_Mm SINE Alu 0 147 5 7 1046 23 0 0 0 chr11 60540533 60540556 -61303300 + GC_rich Low_complexity Low_complexity 1 23 0 7 1046 22 35 0 0 chr11 60540775 60540804 -61303052 + GC_rich Low_complexity Low_complexity 1 29 0 7 1046 222 37 0 0 chr11 60541045 60541072 -61302784 + (TGG)n Simple_repeat Simple_repeat 3 29 0 8 1046 551 169 134 24 chr11 60542397 60542524 -61301332 - B1_Mur2 SINE Alu 0 149 9 8 1046 268 250 62 0 chr11 60542478 60542542 -61301314 - B4 SINE B4 -153 139 72 8 1046 222 62 0 0 chr11 60545843 60545875 -61297981 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1046 186 43 0 0 chr11 60546996 60547019 -61296837 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 8 1046 183 220 0 0 chr11 60547013 60547063 -61296793 + (CCTA)n Simple_repeat Simple_repeat 2 51 0 8 1046 869 119 7 50 chr11 60547063 60547204 -61296652 - B1_Mur3 SINE Alu -13 136 2 8 1046 589 185 97 1 chr11 60547208 60547343 -61296513 - B1_Mus1 SINE Alu -1 149 3 8 1046 1791 177 49 14 chr11 60547716 60548083 -61295773 - MTD LTR MaLR -39 380 1 8 1046 562 241 7 15 chr11 60548593 60548728 -61295128 + MTD LTR MaLR 1 134 -285 8 1046 279 65 350 61 chr11 60548706 60548820 -61295036 - B2_Mm2 SINE B2 -2 193 47 9 1046 711 196 22 0 chr11 60548871 60549009 -61294847 - B2_Mm1t SINE B2 -14 179 39 9 1046 1539 52 11 0 chr11 60549047 60549238 -61294618 + B2_Mm1t SINE B2 1 193 0 9 1046 372 189 130 22 chr11 60549362 60549454 -61294402 + U6 snRNA snRNA 1 102 -5 9 1046 358 327 48 0 chr11 60549677 60549781 -61294075 + ID_B1 SINE B4 80 188 -36 9 1046 5550 173 90 17 chr11 60550408 60551636 -61292220 - ORR1A4-int LTR MaLR -632 1331 15 9 1046 2044 96 29 0 chr11 60551646 60551958 -61291898 - ORR1A4 LTR MaLR -8 321 1 9 1046 609 279 13 20 chr11 60551960 60552110 -61291746 + B3A SINE B2 40 188 -10 9 1046 223 250 19 0 chr11 60552573 60552625 -61291231 + CT-rich Low_complexity Low_complexity 4 56 0 9 1046 372 174 283 0 chr11 60552851 60552943 -61290913 + PB1D9 SINE Alu 2 119 -1 9 1046 370 217 24 0 chr11 60552998 60553081 -61290775 + B1_Mus2 SINE Alu 6 90 -57 9 1046 351 222 130 10 chr11 60554265 60554365 -61289491 + PB1D10 SINE Alu 6 117 0 1 1046 796 210 56 51 chr11 60554498 60554694 -61289162 - B3A SINE B2 0 198 2 1 1046 305 361 0 0 chr11 60555110 60555207 -61288649 + ID_B1 SINE B4 75 171 -53 1 1046 412 265 20 0 chr11 60555126 60555224 -61288632 + PB1D10 SINE Alu 10 109 -8 1 1047 774 154 260 11 chr11 60557186 60557363 -61286493 - URR1B DNA MER1_type -4 221 1 1 1047 735 204 20 40 chr11 60557643 60557791 -61286065 - B1_Mur1 SINE Alu 0 149 5 1 1047 846 152 0 36 chr11 60557910 60558047 -61285809 + B1_Mur3 SINE Alu 13 144 -5 1 1047 435 222 7 225 chr11 60558083 60558234 -61285622 + B1F SINE Alu 3 149 0 1 1047 459 261 0 34 chr11 60558318 60558437 -61285419 + PB1D10 SINE Alu 1 115 -2 1 1047 1118 62 7 14 chr11 60558437 60558584 -61285272 + B1_Mm SINE Alu 1 147 0 1 1047 603 273 157 11 chr11 60558721 60558899 -61284957 + B3 SINE B2 2 205 -11 1 1047 814 250 6 0 chr11 60558968 60559124 -61284732 - B3 SINE B2 -57 159 3 1 1047 225 102 0 71 chr11 60559960 60559972 -61283884 + MT2B LTR ERVL 249 257 -344 1 1047 967 72 0 0 chr11 60559972 60560097 -61283759 + B1_Mus2 SINE Alu 1 125 -22 1 1047 374 273 208 0 chr11 60560169 60560323 -61283533 - MER21B LTR ERV1 -169 694 509 1 1047 333 330 192 25 chr11 60560366 60560605 -61283251 - MER21B LTR ERV1 -495 368 90 1 1047 1413 75 5 11 chr11 60560718 60560908 -61282948 - B2_Mm2 SINE B2 -5 190 2 1 1047 464 260 19 0 chr11 60560912 60561016 -61282840 - PB1D7 SINE Alu -5 115 10 1 1047 290 123 0 17 chr11 60561744 60561802 -61282054 + (CAT)n Simple_repeat Simple_repeat 2 58 0 1 1047 465 290 37 0 chr11 60561807 60561914 -61281942 - ID_B1 SINE B4 -28 196 86 1 1047 802 236 58 11 chr11 60562281 60562469 -61281387 - B3A SINE B2 -1 197 1 1 1047 244 228 24 60 chr11 60562491 60562575 -61281281 - ID4 SINE ID -1 82 2 1 1047 329 270 119 10 chr11 60563279 60563380 -61280476 - PB1D9 SINE Alu -2 118 7 1 1047 270 247 44 100 chr11 60563772 60563787 -61280069 + MT2B LTR ERVL 154 163 -438 1 1047 488 178 58 0 chr11 60563787 60563894 -61279962 + B1_Mm SINE Alu 2 115 -5 1 1047 946 230 44 24 chr11 60564637 60564842 -61279014 - B3 SINE B2 -6 210 2 1 1047 1094 197 49 0 chr11 60564889 60565092 -61278764 + B3 SINE B2 4 216 0 1 1047 1419 66 55 0 chr11 60565259 60565441 -61278415 - B2_Mm2 SINE B2 -2 193 2 1 1047 413 220 0 11 chr11 60565449 60565541 -61278315 - MER33 DNA MER1_type -192 132 42 1 1047 469 168 23 164 chr11 60566127 60566255 -61277601 + B1_Mur1 SINE Alu 40 149 0 1 1047 358 255 31 21 chr11 60566269 60566365 -61277491 - PB1D10 SINE Alu 0 117 21 1 1047 299 324 86 0 chr11 60566472 60566577 -61277279 - PB1D10 SINE Alu -3 114 1 1 1047 193 333 14 28 chr11 60566577 60566648 -61277208 - MER5A DNA MER1_type -114 75 6 1 1047 524 236 43 7 chr11 60566806 60566947 -61276909 + B1_Mus2 SINE Alu 2 147 0 1 1047 507 177 135 0 chr11 60567156 60567252 -61276604 - B1_Mur3 SINE Alu -7 142 34 1 1047 1445 54 11 0 chr11 60567754 60567938 -61275918 + B2_Mm1t SINE B2 2 187 -6 1 1047 271 284 235 25 chr11 60568265 60568384 -61275472 - RSINE1 SINE B4 0 165 22 1 1047 1205 54 7 0 chr11 60568668 60568815 -61275041 + B1_Mus1 SINE Alu 1 148 0 1 1047 252 313 252 0 chr11 60568838 60568953 -61274903 - ID_B1 SINE B4 0 224 81 1 1047 234 0 0 0 chr11 60569197 60569223 -61274633 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1047 408 40 0 0 chr11 60569966 60570016 -61273840 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 1 1047 638 180 265 11 chr11 60570444 60570629 -61273227 + Lx5 LINE L1 6819 7050 0 1 1047 552 279 55 35 chr11 60570845 60570990 -61272866 - RSINE1 SINE B4 -15 150 3 1 1047 514 59 12 12 chr11 60571219 60571305 -61272551 + L1Md_F2 LINE L1 6497 6582 0 1 1047 369 0 0 0 chr11 60571329 60571370 -61272486 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1047 856 262 0 0 chr11 60571371 60571531 -61272325 - B3 SINE B2 -52 164 5 1 1047 609 232 43 21 chr11 60571567 60571708 -61272148 - B1_Mur1 SINE Alu 0 149 6 1 1047 345 206 37 110 chr11 60571625 60571734 -61272122 - MT2B LTR ERVL -354 247 147 1 1047 916 133 0 0 chr11 60571947 60572082 -61271774 + B1_Mus1 SINE Alu 1 135 -13 1 1047 333 62 0 0 chr11 60572082 60572130 -61271726 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1047 1114 87 0 0 chr11 60572252 60572390 -61271466 + B1_Mus1 SINE Alu 2 139 -9 1 1047 1381 142 120 19 chr11 60572415 60572674 -61271182 + ORR1B1 LTR MaLR 2 286 -108 1 1047 581 40 13 0 chr11 60572686 60572762 -61271094 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1047 458 172 336 0 chr11 60572989 60573097 -61270759 + B3 SINE B2 1 147 -69 1 1047 450 287 34 25 chr11 60573097 60573215 -61270641 + PB1D7 SINE Alu 2 120 0 1 1047 691 283 45 5 chr11 60573520 60573719 -61270137 - ID_B1 SINE B4 -13 211 5 1 1047 395 38 19 0 chr11 60573812 60573865 -61269991 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1047 22 0 0 0 chr11 60573927 60573949 -61269907 + AT_rich Low_complexity Low_complexity 1 22 0 1 1047 544 284 90 50 chr11 60573949 60574149 -61269707 - B3A SINE B2 -2 214 7 1 1047 676 253 15 64 chr11 60574176 60574379 -61269477 - B3A SINE B2 -4 194 2 1 1047 622 202 18 0 chr11 60574445 60574554 -61269302 - B1_Mur1 SINE Alu -1 148 38 1 1047 321 241 23 57 chr11 60574839 60574927 -61268929 + PB1D10 SINE Alu 30 114 -3 1 1047 585 227 81 29 chr11 60574974 60575110 -61268746 + B1F2 SINE Alu 5 147 -2 1 1047 583 143 36 87 chr11 60576237 60576375 -61267481 - B1_Mur4 SINE Alu -17 133 3 1 1047 1815 164 43 0 chr11 60576436 60576741 -61267115 + MTC LTR MaLR 104 421 0 1 1047 288 300 24 48 chr11 60576744 60576828 -61267028 - B1F SINE Alu -67 82 1 1 1047 22 56 0 0 chr11 60576941 60576977 -61266879 + AT_rich Low_complexity Low_complexity 1 36 0 1 1047 226 289 107 0 chr11 60577055 60577144 -61266712 + PB1D7 SINE Alu 14 112 -5 1 1047 700 248 51 42 chr11 60577179 60577289 -61266567 + ID_B1 SINE B4 8 223 0 1 1047 702 96 10 0 chr11 60577289 60577393 -61266463 + B1_Mus1 SINE Alu 44 148 0 1 1047 350 69 155 0 chr11 60577396 60577454 -61266402 + ORR1C2 LTR MaLR 318 384 0 1 1047 189 74 0 0 chr11 60577481 60577508 -61266348 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1047 412 302 43 0 chr11 60577510 60577626 -61266230 + ID_B1 SINE B4 104 224 0 1 1047 1178 68 0 0 chr11 60577630 60577777 -61266079 + B1_Mus1 SINE Alu 2 148 0 1 1047 674 228 44 0 chr11 60577807 60577943 -61265913 + B3 SINE B2 2 143 -73 1 1047 1014 203 30 15 chr11 60578250 60578450 -61265406 - B3 SINE B2 0 216 14 1 1047 218 119 0 87 chr11 60578477 60578523 -61265333 - B3 SINE B2 -174 42 1 1 1047 224 298 47 23 chr11 60578735 60578821 -61265035 + RSINE1 SINE B4 17 104 -61 1 1047 235 261 128 21 chr11 60578917 60579011 -61264845 + L1M4 LINE L1 3899 4002 -2144 1 1047 679 110 156 0 chr11 60579069 60579178 -61264678 + B1_Mus1 SINE Alu 23 148 0 1 1047 248 70 23 0 chr11 60579179 60579222 -61264634 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 1 1047 298 320 45 19 chr11 60579227 60579383 -61264473 + L1M2 LINE L1 4065 4224 -1919 1 1047 783 134 0 8 chr11 60579396 60579516 -61264340 - PB1D9 SINE Alu -1 119 1 1 1047 287 245 0 0 chr11 60579526 60579579 -61264277 - PB1D9 SINE Alu -6 114 62 1 1047 345 250 118 20 chr11 60579609 60579711 -61264145 + L1M2 LINE L1 4212 4323 -1820 1 1047 213 312 0 0 chr11 60579734 60579782 -61264074 + B1F SINE Alu 32 79 -70 1 1047 234 0 0 0 chr11 60580805 60580831 -61263025 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 1047 226 91 0 0 chr11 60580831 60580864 -61262992 - Lx4A LINE L1 -3 7055 7023 1 1047 1469 128 0 0 chr11 60580865 60581068 -61262788 - Lx4A LINE L1 -220 6838 6636 1 1047 847 206 89 7 chr11 60581088 60581289 -61262567 - ORR1D2 LTR MaLR -9 365 135 1 1047 216 67 0 0 chr11 60581389 60581419 -61262437 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1 1047 759 126 44 0 chr11 60581423 60581558 -61262298 - ORR1D2 LTR MaLR -228 142 2 1 1047 830 203 163 11 chr11 60581560 60581744 -61262112 - B3 SINE B2 -4 212 1 1 1047 806 174 208 0 chr11 60582370 60582548 -61261308 + B3 SINE B2 2 216 0 1 1047 599 193 210 0 chr11 60582796 60582915 -61260941 - B1_Mus2 SINE Alu 0 147 4 1 1047 931 247 197 13 chr11 60582964 60583107 -61260749 - MTD LTR MaLR -16 403 208 1 1047 3489 35 2 0 chr11 60583107 60583502 -61260354 - MTA_Mm LTR MaLR 0 396 1 1 1047 931 247 197 13 chr11 60583502 60583652 -61260204 - MTD LTR MaLR -212 207 53 1 1047 408 16 16 32 chr11 60583652 60583715 -61260141 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1047 1324 115 5 0 chr11 60583842 60584034 -61259822 - B2_Mm1t SINE B2 0 193 1 1 1047 229 247 28 147 chr11 60584168 60584277 -61259579 + MT2B2 LTR ERVL 156 251 -333 1 1047 478 229 0 10 chr11 60584186 60584283 -61259573 + PB1D7 SINE Alu 9 104 -16 1 1047 891 228 109 196 chr11 60584284 60584677 -61259179 - MTE2a LTR MaLR -1 378 20 1 1047 602 254 20 3 chr11 60584761 60584968 -61258888 + L1MB5 LINE L1 4592 4800 -1343 1 1047 1217 224 33 0 chr11 60585062 60585307 -61258549 - B4A SINE B4 -38 254 2 1 1047 892 236 11 6 chr11 60585368 60585547 -61258309 - B3A SINE B2 -18 180 1 1 1047 357 253 73 10 chr11 60585550 60585646 -61258210 - PB1D7 SINE Alu 0 120 19 2 1047 299 261 74 47 chr11 60585656 60585805 -61258051 + L1MB5 LINE L1 4850 5002 -1144 1 1047 942 126 13 26 chr11 60585806 60585961 -61257895 + B2_Mm2 SINE B2 2 154 -41 2 1047 216 0 0 0 chr11 60585962 60585986 -61257870 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1047 565 181 268 24 chr11 60585995 60586159 -61257697 + B3 SINE B2 1 204 -12 2 1047 729 266 31 25 chr11 60586197 60586359 -61257497 + RSINE1 SINE B4 3 165 0 2 1047 252 254 34 0 chr11 60586456 60586515 -61257341 + ID4 SINE ID 2 62 -21 2 1047 245 227 0 102 chr11 60586515 60586623 -61257233 + L1M2 LINE L1 5335 5431 -860 2 1047 1428 63 29 0 chr11 60586634 60586808 -61257048 + B2_Mm2 SINE B2 2 180 -15 2 1047 207 125 0 0 chr11 60586809 60586849 -61257007 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1047 1059 105 14 0 chr11 60586850 60586993 -61256863 - B1_Mus2 SINE Alu -1 146 2 2 1047 23 0 0 0 chr11 60586995 60587018 -61256838 + AT_rich Low_complexity Low_complexity 1 23 0 2 1047 252 0 0 0 chr11 60587021 60587049 -61256807 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1047 975 268 113 3 chr11 60587138 60587501 -61256355 + L1MB5 LINE L1 5570 5972 -202 1 1047 489 221 208 31 chr11 60587737 60587876 -61255980 + B3A SINE B2 12 179 -19 2 1047 197 108 27 0 chr11 60587876 60587913 -61255943 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1047 489 221 208 31 chr11 60587913 60587932 -61255924 + B3A SINE B2 180 198 0 2 1047 1323 101 16 0 chr11 60588153 60588341 -61255515 + B2_Mm1a SINE B2 2 192 -1 2 1047 392 150 12 70 chr11 60589141 60589227 -61254629 + B1_Mur4 SINE Alu 68 148 -2 2 1047 877 181 157 16 chr11 60589340 60589525 -61254331 + B3 SINE B2 1 211 -5 2 1047 750 172 8 8 chr11 60589562 60589691 -61254165 + B1_Mur2 SINE Alu 21 149 0 2 1047 232 211 19 0 chr11 60594151 60594203 -61249653 - ID4_ SINE ID -7 76 24 2 1047 186 333 41 14 chr11 60596271 60596344 -61247512 + L2b LINE L2 3293 3367 -8 2 1047 969 155 7 0 chr11 60596507 60596655 -61247201 - B1_Mur4 SINE Alu -1 149 1 2 1047 180 111 0 0 chr11 60596679 60596706 -61247150 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1047 1380 91 38 0 chr11 60596793 60596979 -61246877 + B2_Mm2 SINE B2 2 194 -1 2 1047 291 290 140 0 chr11 60599631 60599724 -61244132 - PB1D10 SINE Alu -2 115 10 2 1047 622 229 61 0 chr11 60599968 60600099 -61243757 + B1_Mur1 SINE Alu 5 143 -6 2 1047 777 214 146 0 chr11 60600150 60600342 -61243514 - ID_B1 SINE B4 -2 222 3 2 1047 235 333 25 13 chr11 60601922 60602001 -61241855 - ID4_ SINE ID -2 81 2 2 1047 731 225 46 0 chr11 60602049 60602200 -61241656 - B3 SINE B2 -9 207 50 2 1047 283 238 62 31 chr11 60604115 60604180 -61239676 - ZP3AR Satellite Satellite -130 82 16 2 1047 535 161 171 39 chr11 60604188 60604317 -61239539 + B1_Mur1 SINE Alu 4 149 0 2 1047 1371 95 11 5 chr11 60604328 60604519 -61239337 + B2_Mm1t SINE B2 1 192 -1 2 1047 1193 68 0 0 chr11 60604519 60604665 -61239191 + B1_Mus2 SINE Alu 1 147 0 2 1047 1016 149 0 17 chr11 60604844 60605022 -61238834 + B2_Mm2 SINE B2 2 176 -19 2 1047 1166 81 20 75 chr11 60605687 60605888 -61237968 - B2_Mm2 SINE B2 -5 190 1 2 1047 307 185 26 28 chr11 60606694 60606788 -61237068 - BC1_Mm scRNA scRNA -55 97 2 2 1047 1590 42 0 5 chr11 60606892 60607085 -61236771 + B2_Mm1a SINE B2 2 193 0 2 1047 871 208 38 0 chr11 60607584 60607767 -61236089 - B3 SINE B2 -10 206 17 2 1047 239 219 0 0 chr11 60607744 60607785 -61236071 + B3 SINE B2 7 47 -169 2 1047 684 248 15 0 chr11 60608657 60608794 -61235062 - B1_Mur1 SINE Alu -10 139 1 2 1047 803 169 21 7 chr11 60608836 60608979 -61234877 + B1_Mur3 SINE Alu 5 149 0 2 1047 398 333 44 13 chr11 60608997 60609155 -61234701 - RSINE1 SINE B4 0 165 3 2 1047 195 153 44 51 chr11 60609333 60609491 -61234365 + (CAGGG)n Simple_repeat Simple_repeat 2 158 0 2 1047 236 264 239 11 chr11 60609839 60609927 -61233929 + PB1D7 SINE Alu 13 120 0 2 1047 195 69 0 0 chr11 60610268 60610297 -61233559 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1047 1153 45 0 0 chr11 60610317 60610451 -61233405 - B1_Mus1 SINE Alu -13 135 2 2 1047 572 268 21 21 chr11 60610458 60610599 -61233257 - B1F2 SINE Alu -3 146 6 2 1047 353 237 75 0 chr11 60610625 60610718 -61233138 + RSINE1 SINE B4 59 158 -7 2 1047 231 217 78 104 chr11 60611315 60611353 -61232503 + MT2C_Mm LTR ERVL 173 208 -267 2 1047 322 192 0 0 chr11 60611353 60611405 -61232451 + B1_Mus2 SINE Alu 1 52 -95 2 1047 240 303 140 35 chr11 60611512 60611683 -61232173 - RMER15 LTR ERVL -7 568 380 2 1047 433 233 0 62 chr11 60612435 60612563 -61231293 + PB1D7 SINE Alu 1 120 0 2 1047 743 241 60 10 chr11 60612566 60612767 -61231089 + B3 SINE B2 3 213 -3 2 1047 350 183 170 67 chr11 60613430 60613565 -61230291 + B1_Mur2 SINE Alu 1 149 0 2 1047 1158 81 128 0 chr11 60613614 60613786 -61230070 + B2_Mm2 SINE B2 2 195 0 2 1047 634 275 7 39 chr11 60613929 60614084 -61229772 - RSINE1 SINE B4 -13 152 3 2 1047 798 225 47 6 chr11 60614291 60614461 -61229395 - B3 SINE B2 0 216 40 2 1047 290 309 109 16 chr11 60614520 60614546 -61229310 - ID_B1 SINE B4 -1 223 84 2 1047 410 210 108 20 chr11 60614546 60614648 -61229208 - B1F1 SINE Alu -36 113 3 2 1047 223 294 43 11 chr11 60614675 60614768 -61229088 - PB1D10 SINE Alu -6 111 16 2 1047 232 330 77 0 chr11 60614702 60614793 -61229063 - ID_B1 SINE B4 -60 164 67 2 1047 477 62 0 0 chr11 60614860 60614925 -61228931 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1047 387 252 77 10 chr11 60615684 60615788 -61228068 + PB1D10 SINE Alu 2 112 -5 2 1047 307 212 35 12 chr11 60615943 60616029 -61227827 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 2 1047 2714 125 45 5 chr11 60616035 60616478 -61227378 - RMER6B LTR ERVK 0 461 1 2 1047 457 115 0 49 chr11 60616506 60616521 -61227335 - MYSERV6-int LTR ERVK -1203 7756 7745 2 1047 1373 62 22 6 chr11 60616521 60616699 -61227157 - B2_Mm2 SINE B2 -14 181 1 2 1047 457 115 0 49 chr11 60616699 60616765 -61227091 - MYSERV6-int LTR ERVK -1215 7744 7679 2 1047 398 147 0 42 chr11 60616771 60616842 -61227014 + RLTR11A LTR ERVK 1 68 -460 2 1047 288 227 169 11 chr11 60616879 60616968 -61226888 + B1F1 SINE Alu 44 146 -3 2 1047 366 248 30 104 chr11 60617397 60617463 -61226393 + PB1 SINE Alu 1 66 -61 2 1047 1458 88 0 5 chr11 60617463 60617657 -61226199 + B2_Mm2 SINE B2 2 194 -1 2 1047 366 248 30 104 chr11 60617657 60617725 -61226131 + PB1 SINE Alu 67 125 -2 2 1047 641 246 63 23 chr11 60617932 60618107 -61225749 + ID_B1 SINE B4 1 182 -42 2 1047 22 70 0 0 chr11 60618294 60618337 -61225519 + AT_rich Low_complexity Low_complexity 1 43 0 2 1047 1189 82 38 0 chr11 60618405 60618563 -61225293 + B2_Mm2 SINE B2 1 164 -31 2 1047 374 289 10 58 chr11 60618565 60618668 -61225188 + ID_B1 SINE B4 81 178 -46 2 1047 509 147 112 31 chr11 60618692 60618790 -61225066 - B1_Mur2 SINE Alu 0 149 44 2 1047 2652 117 31 51 chr11 60618843 60619295 -61224561 + Lx LINE L1 6205 6647 -7 2 1047 21 0 0 0 chr11 60619295 60619316 -61224540 + AT_rich Low_complexity Low_complexity 1 21 0 2 1047 267 269 212 22 chr11 60619481 60619618 -61224238 + Tigger5 DNA MER2_type 28 190 -2216 2 1047 332 279 86 9 chr11 60619643 60619748 -61224108 + Tigger5 DNA MER2_type 2291 2403 -3 2 1047 286 266 24 48 chr11 60619926 60620009 -61223847 - ID4 SINE ID -1 82 2 2 1047 287 134 11 99 chr11 60620145 60620159 -61223697 + A-rich Low_complexity Low_complexity 1 14 0 2 1047 1087 43 63 28 chr11 60620159 60620302 -61223554 + B1_Mus1 SINE Alu 1 148 0 2 1047 287 134 11 99 chr11 60620302 60620378 -61223478 + A-rich Low_complexity Low_complexity 15 83 0 2 1047 665 199 43 0 chr11 60621306 60621447 -61222409 + B1_Mur3 SINE Alu 3 149 0 2 1047 701 175 80 0 chr11 60622078 60622215 -61221641 + RMER10B LTR ERVL 203 350 -48 2 1047 186 43 0 0 chr11 60622619 60622642 -61221214 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1047 450 212 67 50 chr11 60622642 60622754 -61221102 - B1_Mus2 SINE Alu -6 141 27 2 1047 227 352 14 0 chr11 60622962 60623033 -61220823 - RSINE1 SINE B4 -91 74 3 2 1047 306 0 0 0 chr11 60623070 60623104 -61220752 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 2 1047 607 279 66 0 chr11 60623108 60623305 -61220551 - ID_B1 SINE B4 -13 211 2 2 1047 370 207 115 49 chr11 60623344 60623466 -61220390 - B1_Mm SINE Alu -15 132 3 2 1047 395 190 13 0 chr11 60623479 60623558 -61220298 - PB1D9 SINE Alu 0 120 41 2 1047 264 111 80 5 chr11 60623622 60623679 -61220177 - B1_Mm SINE Alu 0 149 91 2 1047 241 299 15 0 chr11 60624257 60624324 -61219532 + 4.5SRNA scRNA scRNA 22 89 -5 2 1047 485 194 48 10 chr11 60624268 60624372 -61219484 + ID_B1 SINE B4 117 224 0 2 1047 352 161 0 0 chr11 60624528 60624590 -61219266 + ID_B1 SINE B4 81 142 -82 2 1047 426 175 97 16 chr11 60624537 60624657 -61219199 + B1_Mus2 SINE Alu 9 70 -77 2 1047 299 208 0 0 chr11 60625102 60625150 -61218706 - PB1D9 SINE Alu -71 49 2 2 1047 1093 50 7 0 chr11 60625178 60625319 -61218537 - B1_Mus1 SINE Alu 0 148 7 2 1047 203 125 0 24 chr11 60625353 60625394 -61218462 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1047 217 294 15 0 chr11 60625410 60625478 -61218378 + PB1D10 SINE Alu 31 99 -18 2 1047 1120 168 38 9 chr11 60625619 60625829 -61218027 + B3 SINE B2 1 216 0 3 1047 22 94 0 0 chr11 60625859 60625923 -61217933 + AT_rich Low_complexity Low_complexity 1 64 0 3 1047 322 203 17 0 chr11 60625931 60625990 -61217866 + B1_Mur4 SINE Alu 1 60 -90 3 1047 765 197 7 7 chr11 60625975 60626118 -61217738 - B3 SINE B2 -73 143 1 3 1047 200 132 0 26 chr11 60626124 60626163 -61217693 + A-rich Low_complexity Low_complexity 4 41 0 3 1047 898 118 23 10 chr11 60626170 60626319 -61217537 + B3 SINE B2 2 150 -45 3 1047 1429 115 11 81 chr11 60626333 60626475 -61217381 - RMER6A LTR ERVK -327 429 309 3 1047 3227 85 173 16 chr11 60626475 60626978 -61216878 - MT2B2 LTR ERVL 0 584 3 3 1047 1429 115 11 81 chr11 60626978 60627119 -61216737 - RMER6A LTR ERVK -448 308 166 3 1047 1433 76 16 0 chr11 60627178 60627363 -61216493 + B2_Mm2 SINE B2 1 188 -7 3 1047 1614 52 0 0 chr11 60627443 60627636 -61216220 + B2_Mm1t SINE B2 1 193 0 3 1047 1594 47 0 86 chr11 60627651 60627816 -61216040 + L1_Mus2 LINE L1 6355 6507 -59 3 1047 3599 15 2 0 chr11 60627816 60628211 -61215645 + MTA_Mm LTR MaLR 1 396 0 3 1047 9510 24 4 1 chr11 60628211 60629306 -61214550 + MTA_Mm-int LTR MaLR 1 1098 0 3 1047 3612 13 2 0 chr11 60629306 60629701 -61214155 + MTA_Mm LTR MaLR 1 396 0 3 1047 1594 47 0 86 chr11 60629701 60629765 -61214091 + L1_Mus2 LINE L1 6508 6564 -2 3 1047 1297 62 5 43 chr11 60630166 60630339 -61213517 + B2_Mm2 SINE B2 1 167 -28 3 1047 1149 29 0 0 chr11 60630339 60630476 -61213380 + (GAA)n Simple_repeat Simple_repeat 2 138 0 3 1047 602 146 9 0 chr11 60632156 60632266 -61211590 + CT-rich Low_complexity Low_complexity 2 112 0 3 1047 3866 70 70 37 chr11 60632863 60633409 -61210447 + LTRIS2 LTR ERV1 1 564 0 3 1047 1910 122 89 13 chr11 60633420 60633735 -61210121 - RLTR14 LTR ERV1 0 382 44 3 1047 248 299 0 110 chr11 60633849 60633958 -61209898 - RLTR14 LTR ERV1 -281 101 5 3 1047 1215 61 0 0 chr11 60633960 60634107 -61209749 + B1_Mus2 SINE Alu 1 147 0 3 1047 1765 166 23 48 chr11 60634140 60634539 -61209317 + RMER17C LTR ERVK 8 396 -14 3 1047 1308 118 16 0 chr11 60634544 60634731 -61209125 - B2_Mm2 SINE B2 0 195 6 3 1047 2348 97 275 12 chr11 60634805 60635303 -61208553 - RLTR14-int LTR ERV1 0 5317 4689 3 1047 452 110 54 14 chr11 60635293 60635367 -61208489 - RLTR14-int LTR ERV1 -1688 3629 3553 3 1047 309 294 28 119 chr11 60635392 60635419 -61208437 + B4 SINE B4 90 219 -73 3 1047 633 193 9 17 chr11 60635419 60635535 -61208321 + B1F2 SINE Alu 28 142 -7 3 1047 308 93 0 0 chr11 60635664 60635707 -61208149 + B2_Mm2 SINE B2 1 43 -152 3 1047 1164 62 14 0 chr11 60635707 60635851 -61208005 + B1_Mus1 SINE Alu 2 147 -1 3 1047 222 227 67 0 chr11 60635851 60635882 -61207974 + B2_Mm1t SINE B2 45 79 -114 3 1047 1024 134 6 12 chr11 60635894 60636060 -61207796 + B2_Mm2 SINE B2 27 191 -4 3 1047 268 364 117 17 chr11 60636165 60636344 -61207512 + MER67C LTR ERV1 27 223 -488 3 1047 277 296 24 12 chr11 60636347 60636429 -61207427 + PB1D10 SINE Alu 1 83 -34 3 1047 687 138 9 0 chr11 60636456 60636565 -61207291 + B1_Mus1 SINE Alu 38 147 -1 3 1047 386 260 28 37 chr11 60636634 60636742 -61207114 + PB1D10 SINE Alu 9 115 -2 3 1047 765 205 67 6 chr11 60636761 60636938 -61206918 + B3 SINE B2 2 191 -7 3 1047 283 273 0 0 chr11 60637184 60637250 -61206606 - RSINE1 SINE B4 -95 70 5 3 1047 713 278 52 6 chr11 60637286 60637460 -61206396 + ID_B1 SINE B4 1 182 -42 3 1047 764 212 7 20 chr11 60637574 60637711 -61206145 + B1_Mur1 SINE Alu 3 139 -10 3 1047 206 32 32 0 chr11 60637711 60637742 -61206114 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1047 764 212 7 20 chr11 60637742 60637753 -61206103 + B1_Mur1 SINE Alu 140 149 0 3 1047 1465 74 16 0 chr11 60637753 60637943 -61205913 + B2_Mm2 SINE B2 1 193 -2 3 1047 1654 42 0 0 chr11 60637946 60638138 -61205718 + B2_Mm1a SINE B2 1 192 -1 3 1047 1406 83 0 6 chr11 60638163 60638344 -61205512 + B2_Mm2 SINE B2 1 180 -15 3 1047 916 61 0 0 chr11 60638345 60638460 -61205396 + B1_Mus1 SINE Alu 28 142 -6 3 1047 321 47 0 0 chr11 60638462 60638505 -61205351 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1047 892 287 43 8 chr11 60638618 60638871 -61204985 + MER67C LTR ERV1 394 655 -56 3 1047 878 122 69 35 chr11 60639193 60639337 -61204519 - B1_Mur4 SINE Alu 0 150 2 3 1047 1211 90 45 0 chr11 60639608 60639786 -61204070 - B2_Mm1a SINE B2 -6 187 2 3 1047 234 0 0 0 chr11 60639788 60639814 -61204042 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 1047 1029 99 0 0 chr11 60639814 60639945 -61203911 - B1_Mus1 SINE Alu -13 135 5 3 1047 1007 213 52 73 chr11 60640038 60640382 -61203474 + RLTR15 LTR ERVK 2 338 -21 3 1047 282 234 104 21 chr11 60640427 60640523 -61203333 - RMER15 LTR ERVL -40 535 432 3 1047 2146 206 20 71 chr11 60640950 60641418 -61202438 + MT2A LTR ERVL 1 459 -74 3 1047 408 20 0 0 chr11 60641418 60641467 -61202389 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1047 2146 206 20 71 chr11 60641467 60641493 -61202363 + MT2A LTR ERVL 460 476 -57 3 1047 459 0 0 0 chr11 60641493 60641544 -61202312 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 3 1047 2146 206 20 71 chr11 60641544 60641608 -61202248 + MT2A LTR ERVL 477 531 -2 3 1047 924 246 10 10 chr11 60641842 60642047 -61201809 + B3 SINE B2 1 205 -11 3 1047 1245 75 17 22 chr11 60642073 60642251 -61201605 + B2_Mm2 SINE B2 10 186 -9 3 1047 21 36 0 0 chr11 60642273 60642301 -61201555 + AT_rich Low_complexity Low_complexity 1 28 0 3 1047 678 319 167 36 chr11 60642431 60642846 -61201010 - L1MDa LINE L1 -5551 1082 668 3 1047 852 163 44 0 chr11 60642969 60643104 -61200752 + B1_Mus1 SINE Alu 2 142 -6 3 1047 556 153 0 0 chr11 60643225 60643310 -61200546 - B1_Mur2 SINE Alu -2 147 63 3 1047 769 140 0 23 chr11 60643295 60643427 -61200429 + B1_Mur3 SINE Alu 21 149 0 3 1047 805 117 15 0 chr11 60643526 60643663 -61200193 + (TA)n Simple_repeat Simple_repeat 1 139 0 3 1047 340 345 8 8 chr11 60643856 60643973 -61199883 - PB1D10 SINE Alu 0 117 1 3 1047 258 292 179 0 chr11 60644642 60644810 -61199046 + MIRb SINE MIR 60 257 -11 3 1047 1176 68 0 0 chr11 60645320 60645468 -61198388 - B2_Mm2 SINE B2 -47 148 1 3 1047 420 314 153 27 chr11 60646077 60646339 -61197517 - RMER15 LTR ERVL -91 484 190 3 1047 225 83 0 0 chr11 60646554 60646590 -61197266 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1047 526 227 31 39 chr11 60646597 60646760 -61197096 + B3 SINE B2 1 167 -28 3 1047 592 27 0 0 chr11 60646873 60646946 -61196910 + B1_Mus2 SINE Alu 75 147 0 3 1047 355 320 55 2 chr11 60646990 60647108 -61196748 - PB1D10 SINE Alu -21 126 2 3 1047 484 152 128 37 chr11 60647116 60647225 -61196631 - PB1D9 SINE Alu 0 120 2 3 1047 207 0 0 0 chr11 60647249 60647272 -61196584 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1047 1575 52 16 0 chr11 60647422 60647614 -61196242 - B2_Mm2 SINE B2 0 195 1 3 1047 384 283 14 48 chr11 60648147 60648292 -61195564 - HAL1-2a_MD LINE L1 -526 2498 2359 3 1047 690 95 74 67 chr11 60648444 60648579 -61195277 - B2_Mm2 SINE B2 -22 173 38 3 1047 771 67 10 0 chr11 60648553 60648657 -61195199 - B1_Mus1 SINE Alu -42 106 2 3 1047 1033 193 201 15 chr11 60648661 60648811 -61195045 - ORR1C1 LTR MaLR -41 353 140 3 1047 198 0 0 0 chr11 60648811 60648833 -61195023 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1047 1033 144 65 16 chr11 60648833 60648961 -61194895 - ORR1C1 LTR MaLR -245 139 1 3 1047 4848 204 80 73 chr11 60648978 60650287 -61193569 - ORR1C1-int LTR MaLR -178 1331 13 3 1047 1848 157 68 7 chr11 60650287 60650643 -61193213 - ORR1C1 LTR MaLR -2 419 1 3 1047 254 314 48 10 chr11 60650643 60650723 -61193133 - ORR1C1-int LTR MaLR -339 1031 948 3 1047 1226 41 7 0 chr11 60651788 60651934 -61191922 - B1_Mus1 SINE Alu 0 148 2 3 1047 520 193 0 0 chr11 60652573 60652661 -61191195 - PB1D9 SINE Alu -5 115 28 3 1047 222 274 200 46 chr11 60652661 60652693 -61191163 - B4A SINE B4 -59 201 84 3 1047 1260 54 0 0 chr11 60652965 60653113 -61190743 + B1_Mus1 SINE Alu 1 148 0 3 1047 1200 56 0 0 chr11 60653141 60653283 -61190573 + B1_Mus1 SINE Alu 1 142 -6 3 1047 272 61 0 58 chr11 60653290 60653342 -61190514 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1047 1640 127 184 3 chr11 60653443 60653758 -61190098 - MTC LTR MaLR 0 421 50 3 1047 1195 188 206 3 chr11 60654024 60654334 -61189522 - ORR1D1 LTR MaLR 0 374 2 3 1047 594 151 148 16 chr11 60654335 60654463 -61189393 - ORR1D1-int LTR MaLR 0 1370 1226 3 1047 1423 39 5 32 chr11 60654471 60654657 -61189199 + B2_Mm1a SINE B2 2 182 -11 3 1047 25 31 0 0 chr11 60654657 60654689 -61189167 + AT_rich Low_complexity Low_complexity 1 32 0 3 1047 2157 261 96 88 chr11 60654697 60655257 -61188599 - ORR1D1-int LTR MaLR -143 1227 653 3 1047 766 177 0 52 chr11 60655257 60655412 -61188444 - B1_Mur4 SINE Alu 0 150 4 3 1047 2157 274 101 76 chr11 60655412 60656153 -61187703 - ORR1D1-int LTR MaLR -607 763 1 3 1047 488 239 199 4 chr11 60656154 60656420 -61187436 - ORR1D1 LTR MaLR -1 373 4 3 1047 978 26 0 0 chr11 60656798 60656915 -61186941 - B1_Mm SINE Alu 0 147 31 3 1047 1240 82 60 5 chr11 60658049 60658233 -61185623 + B2_Mm2 SINE B2 1 194 -1 3 1047 213 256 85 43 chr11 60658782 60658876 -61184980 - MIRb SINE MIR -136 132 35 3 1047 613 211 80 36 chr11 60659237 60659375 -61184481 - B1F2 SINE Alu 0 149 6 3 1047 181 347 13 65 chr11 60660753 60660830 -61183026 - L4 LINE RTE -156 1873 1801 3 1047 396 271 32 98 chr11 60660935 60661091 -61182765 + ID_B1 SINE B4 81 224 0 3 1047 1021 96 141 0 chr11 60661094 60661250 -61182606 + B2_Mm1t SINE B2 2 179 -14 3 1047 303 115 0 71 chr11 60661295 60661351 -61182505 + B2_Mm2 SINE B2 48 99 -96 3 1047 2900 71 5 3 chr11 60661388 60661757 -61182099 + L1_Mus3 LINE L1 6194 6563 -75 3 1047 495 48 0 0 chr11 60662792 60662854 -61181002 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 3 1047 929 79 161 26 chr11 60663004 60663159 -61180697 - B2_Mm2 SINE B2 -18 177 2 3 1047 1013 139 29 6 chr11 60663160 60663334 -61180522 - URR1B DNA MER1_type -5 220 43 3 1047 459 0 0 0 chr11 60663335 60663386 -61180470 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1047 254 287 122 68 chr11 60663460 60663621 -61180235 - L1M4c LINE L1 -5108 1276 1113 3 1047 869 165 210 0 chr11 60663621 60663797 -61180059 - B3 SINE B2 -2 214 2 3 1047 254 287 122 68 chr11 60663797 60664046 -61179810 - L1M4c LINE L1 -5272 1112 844 3 1047 837 147 35 0 chr11 60664046 60664189 -61179667 - B1_Mur4 SINE Alu -1 149 2 3 1047 289 208 180 90 chr11 60664313 60664424 -61179432 - L1M4c LINE L1 -6050 334 214 3 1047 841 180 7 7 chr11 60666084 60666224 -61177632 + B1_Mur4 SINE Alu 5 144 -6 4 1047 549 171 61 35 chr11 60666355 60666470 -61177386 - B1_Mm SINE Alu 0 147 30 4 1047 261 308 76 9 chr11 60666501 60666606 -61177250 + MIR SINE MIR 37 148 -114 4 1047 252 0 0 0 chr11 60666684 60666712 -61177144 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1047 1171 55 7 0 chr11 60666719 60666864 -61176992 - B1_Mus1 SINE Alu -1 147 2 4 1047 1259 103 22 0 chr11 60667288 60667472 -61176384 - B2_Mm2 SINE B2 -7 188 1 4 1047 1247 89 15 10 chr11 60667479 60667665 -61176191 - B2_Mm2 SINE B2 -7 191 9 4 1047 312 262 182 0 chr11 60669024 60669150 -61174706 - L1MC4 LINE L1 -133 7909 7761 4 1047 288 204 36 18 chr11 60670524 60670579 -61173277 + RSINE1 SINE B4 2 57 -108 4 1047 655 116 125 68 chr11 60670585 60670761 -61173095 - B2_Mm2 SINE B2 -8 187 2 4 1047 1143 75 0 13 chr11 60671042 60671191 -61172665 - B1_Mus2 SINE Alu 0 147 1 4 1047 855 168 7 40 chr11 60671757 60671906 -61171950 - B1_Mus1 SINE Alu 0 148 5 4 1047 880 93 8 8 chr11 60672342 60672472 -61171384 - B1_Mur4 SINE Alu -19 131 2 4 1047 1269 47 0 0 chr11 60672973 60673121 -61170735 + B1_Mus1 SINE Alu 1 148 0 4 1047 357 24 0 0 chr11 60673125 60673167 -61170689 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 4 1047 373 81 32 0 chr11 60673168 60673230 -61170626 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1047 807 293 172 10 chr11 60673280 60674219 -61169637 - L1M2 LINE L1 -538 5759 4619 4 1047 715 34 0 0 chr11 60674232 60674321 -61169535 - B1_Mus2 SINE Alu 0 147 59 4 1047 242 196 34 51 chr11 60674281 60674340 -61169516 - RLTR25A LTR ERVK -531 572 515 4 1047 547 293 70 32 chr11 60674415 60674602 -61169254 - ID_B1 SINE B4 -26 198 5 4 1047 302 288 62 25 chr11 60674602 60674762 -61169094 - L1_Mm LINE L1 -1353 4530 4365 4 1047 1062 248 9 19 chr11 60674811 60675025 -61168831 - B3 SINE B2 -4 212 1 4 1047 1174 106 53 0 chr11 60675961 60676131 -61167725 + B2_Mm1t SINE B2 1 179 -14 4 1047 301 304 27 71 chr11 60676131 60676315 -61167541 + B2_Mm2 SINE B2 2 177 -18 4 1047 231 61 0 0 chr11 60676689 60676722 -61167134 + (CAGCC)n Simple_repeat Simple_repeat 4 36 0 4 1047 341 185 203 85 chr11 60677419 60677537 -61166319 + B1_Mm SINE Alu 1 132 -15 4 1047 361 299 86 58 chr11 60678963 60679044 -61164812 + MT2B LTR ERVL 73 251 -350 4 1047 464 258 0 0 chr11 60679044 60679137 -61164719 + B1_Mm SINE Alu 4 96 -51 4 1047 257 233 35 104 chr11 60679083 60679198 -61164658 + RLTR25B LTR ERVK 444 550 -478 4 1047 357 239 45 9 chr11 60679716 60679826 -61164030 + PB1D10 SINE Alu 3 116 -1 4 1047 235 27 0 0 chr11 60680028 60680065 -61163791 + L1Md_T LINE L1 6546 6582 0 4 1047 976 182 93 5 chr11 60681425 60681618 -61162238 + MTC LTR MaLR 1 210 -211 4 1047 1419 201 118 65 chr11 60681619 60682083 -61161773 + RMER1C Other Other 853 1341 -1 4 1047 1112 158 4 119 chr11 60682089 60682140 -61161716 + MTC LTR MaLR 200 235 -186 4 1047 1220 36 0 0 chr11 60682140 60682279 -61161577 + B1_Mus1 SINE Alu 2 140 -8 4 1047 181 0 69 0 chr11 60682279 60682308 -61161548 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1047 1112 158 4 119 chr11 60682308 60682499 -61161357 + MTC LTR MaLR 236 414 -7 4 1047 473 144 0 100 chr11 60682844 60682944 -61160912 - B1_Mm SINE Alu -16 131 42 4 1047 189 0 0 0 chr11 60682947 60682968 -61160888 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1047 1177 56 0 0 chr11 60682969 60683113 -61160743 - B1_Mus1 SINE Alu -3 145 2 4 1047 619 246 163 25 chr11 60683117 60683313 -61160543 - B4 SINE B4 -69 223 1 4 1047 358 190 194 29 chr11 60683966 60684069 -61159787 - PB1D9 SINE Alu 0 120 1 4 1047 1166 21 7 0 chr11 60684128 60684269 -61159587 + B1_Mus1 SINE Alu 7 148 0 4 1047 26 30 0 0 chr11 60684478 60684511 -61159345 + AT_rich Low_complexity Low_complexity 1 33 0 4 1047 669 217 46 15 chr11 60684531 60684662 -61159194 - B1_Mur2 SINE Alu -14 135 1 4 1047 375 229 12 0 chr11 60684732 60684815 -61159041 - L1M3 LINE L1 -486 5682 5599 4 1047 540 253 213 0 chr11 60684847 60685021 -61158835 - B3 SINE B2 -5 211 1 4 1047 288 276 105 0 chr11 60685056 60685132 -61158724 - RSINE1 SINE B4 -16 149 66 4 1047 694 191 24 0 chr11 60685220 60685346 -61158510 - ID_B1 SINE B4 -5 219 91 4 1047 227 351 31 62 chr11 60685346 60685381 -61158475 + YREP_Mm Unknown Unknown 182 337 -1475 4 1047 390 297 65 21 chr11 60685521 60685707 -61158149 - L1MB5 LINE L1 -119 6055 5862 4 1047 308 350 98 21 chr11 60685900 60686043 -61157813 + RSINE1 SINE B4 2 155 -10 4 1048 461 306 77 46 chr11 60686590 60686785 -61157071 - B4A SINE B4 -91 201 1 4 1048 428 235 78 0 chr11 60686840 60686942 -61156914 - PB1D9 SINE Alu -2 118 9 4 1048 263 317 60 50 chr11 60686998 60687104 -61156752 + PB1 SINE Alu 3 108 -9 4 1048 234 257 40 89 chr11 60687101 60687225 -61156631 - RMER17C LTR ERVK -253 157 40 4 1048 319 224 11 66 chr11 60687191 60687282 -61156574 + ID_B1 SINE B4 139 224 0 4 1048 434 213 7 0 chr11 60687351 60687501 -61156355 + GA-rich Low_complexity Low_complexity 2 152 0 4 1048 344 111 0 14 chr11 60687501 60687574 -61156282 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1048 274 225 99 0 chr11 60687816 60687887 -61155969 + B3A SINE B2 38 115 -83 4 1048 919 136 0 0 chr11 60687928 60688060 -61155796 + B1_Mus1 SINE Alu 16 147 -1 4 1048 322 318 63 8 chr11 60689681 60689808 -61154048 + MER3 DNA MER1_type 66 199 -10 4 1048 333 266 0 96 chr11 60690818 60690839 -61153017 + MT2B LTR ERVL 146 154 -447 4 1048 715 180 0 32 chr11 60690839 60690965 -61152891 + B1_Mur3 SINE Alu 2 123 -26 4 1048 261 0 0 0 chr11 60691147 60691176 -61152680 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1048 593 281 88 0 chr11 60693046 60693217 -61150639 + B3 SINE B2 1 186 -30 4 1048 180 0 0 0 chr11 60693217 60693237 -61150619 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 4 1048 1187 29 14 0 chr11 60693636 60693775 -61150081 + B1_Mus1 SINE Alu 4 144 -4 4 1048 207 0 0 0 chr11 60693775 60693798 -61150058 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1048 752 200 104 143 chr11 60694045 60694138 -61149718 - MTE2a LTR MaLR 0 379 281 4 1048 1591 211 53 14 chr11 60694138 60694494 -61149362 + ORR1D1 LTR MaLR 1 370 -4 4 1048 752 200 104 143 chr11 60694494 60694577 -61149279 - MTE2a LTR MaLR -99 280 209 4 1048 1410 77 39 0 chr11 60694577 60694759 -61149097 + B2_Mm2 SINE B2 2 190 -5 4 1048 752 200 104 143 chr11 60694759 60694861 -61148995 - MTE2a LTR MaLR -171 208 111 4 1048 491 311 43 170 chr11 60694885 60695022 -61148834 - MTE-int LTR MaLR 0 1580 1413 4 1048 847 106 0 47 chr11 60695022 60695151 -61148705 + B1_Mus1 SINE Alu 26 148 0 4 1048 491 311 43 170 chr11 60695151 60695327 -61148529 - MTE-int LTR MaLR 0 1412 1195 4 1048 1011 54 16 0 chr11 60695329 60695458 -61148398 + B1_Mus1 SINE Alu 18 148 0 4 1048 1409 279 110 53 chr11 60695458 60696000 -61147856 - MTE-int LTR MaLR -394 1186 486 4 1048 1027 278 8 15 chr11 60695986 60696249 -61147607 - MTE-int LTR MaLR -1206 374 114 4 1048 1667 62 0 0 chr11 60696277 60696486 -61147370 - L1Md_T LINE L1 0 6582 6374 4 1048 548 232 39 18 chr11 60696493 60696653 -61147203 - B3 SINE B2 -1 194 29 4 1048 513 0 0 0 chr11 60696653 60696710 -61147146 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1048 216 0 0 0 chr11 60696710 60696733 -61147123 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1048 1253 68 6 0 chr11 60696735 60696896 -61146960 - B2_Mm2 SINE B2 -33 162 1 4 1048 408 287 10 19 chr11 60696898 60697001 -61146855 - MTE-int LTR MaLR -1452 128 27 4 1048 546 275 19 51 chr11 60697036 60697193 -61146663 - MTE2a LTR MaLR -74 305 154 4 1048 1943 159 104 5 chr11 60697193 60697567 -61146289 + MTC LTR MaLR 3 413 -8 4 1048 778 176 8 2 chr11 60697608 60697744 -61146112 + B1_Mur4 SINE Alu 2 137 -13 4 1048 207 0 0 0 chr11 60697747 60697770 -61146086 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1048 241 242 16 31 chr11 60697770 60697834 -61146022 - MTE2a LTR MaLR -316 63 1 4 1048 191 114 29 0 chr11 60698433 60698468 -61145388 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 4 1048 400 216 17 128 chr11 60698505 60698622 -61145234 + MT2B LTR ERVL 155 258 -343 4 1048 964 144 0 14 chr11 60698520 60698668 -61145188 + B1_Mur4 SINE Alu 5 150 0 4 1048 482 286 143 0 chr11 60698899 60699067 -61144789 + B3 SINE B2 1 192 -24 4 1048 421 243 99 42 chr11 60699118 60699260 -61144596 - B1_Mur4 SINE Alu 0 150 1 4 1048 231 257 29 0 chr11 60699287 60699357 -61144499 + GA-rich Low_complexity Low_complexity 1 72 0 4 1048 232 225 0 0 chr11 60699293 60699333 -61144523 + polypurine Low_complexity Low_complexity 3 42 0 4 1048 198 191 0 0 chr11 60699451 60699493 -61144363 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1048 497 265 69 56 chr11 60699498 60699658 -61144198 - B4A SINE B4 0 292 131 4 1048 389 178 68 0 chr11 60699660 60699733 -61144123 - B3 SINE B2 -82 134 57 4 1048 266 0 29 0 chr11 60699793 60699827 -61144029 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1048 548 219 0 0 chr11 60699940 60700036 -61143820 + B3A SINE B2 2 97 -101 4 1048 5014 130 158 37 chr11 60700240 60700754 -61143102 - RLTR25A LTR ERVK -3 1100 492 4 1048 1649 47 0 0 chr11 60700754 60700946 -61142910 + B2_Mm1a SINE B2 2 193 0 4 1048 5014 130 158 37 chr11 60700946 60701412 -61142444 - RLTR25A LTR ERVK -612 491 1 4 1048 1346 72 6 11 chr11 60701676 60701847 -61142009 + B2_Mm1a SINE B2 1 171 -22 4 1048 351 0 0 0 chr11 60701847 60701886 -61141970 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1048 902 127 7 60 chr11 60701899 60702050 -61141806 + B1_Mur3 SINE Alu 6 148 -1 4 1048 239 260 64 13 chr11 60702201 60702279 -61141577 + B3 SINE B2 135 216 0 4 1048 1478 60 16 5 chr11 60702354 60702538 -61141318 - B2_Mm2 SINE B2 -9 186 1 4 1048 683 177 33 72 chr11 60702729 60702881 -61140975 + MTD LTR MaLR 56 201 -218 5 1048 1116 44 7 42 chr11 60702892 60703035 -61140821 + B1_Mus1 SINE Alu 2 139 -9 5 1048 228 86 0 0 chr11 60703035 60703070 -61140786 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1048 540 146 155 0 chr11 60703115 60703218 -61140638 - RSINE1 SINE B4 -45 120 2 5 1048 482 221 21 10 chr11 60703354 60703450 -61140406 + MTD LTR MaLR 1 97 -322 5 1048 797 114 67 30 chr11 60703666 60703801 -61140055 - B1_Mur3 SINE Alu 0 149 10 5 1048 387 278 138 113 chr11 60703671 60703866 -61139990 - B4 SINE B4 -71 221 22 5 1048 863 219 155 25 chr11 60704142 60704364 -61139492 + MTD LTR MaLR 96 362 -57 5 1048 662 91 10 0 chr11 60704505 60704604 -61139252 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 1048 225 227 0 0 chr11 60704779 60704823 -61139033 + MTD LTR MaLR 368 411 -8 5 1048 1387 91 16 0 chr11 60705235 60705422 -61138434 + B2_Mm2 SINE B2 1 190 -5 5 1048 751 224 42 93 chr11 60705429 60705665 -61138191 + ID_B1 SINE B4 1 224 0 5 1048 1259 54 0 0 chr11 60705668 60705815 -61138041 + B1_Mus2 SINE Alu 1 147 0 5 1048 39 22 0 0 chr11 60706329 60706375 -61137481 + AT_rich Low_complexity Low_complexity 1 46 0 5 1048 1214 54 0 26 chr11 60706381 60706533 -61137323 - B1_Mus1 SINE Alu 0 148 1 5 1048 691 136 130 43 chr11 60706608 60706746 -61137110 - B1_Mur4 SINE Alu 0 150 1 5 1048 848 202 117 6 chr11 60706746 60706924 -61136932 - B3 SINE B2 -15 201 3 5 1048 720 213 14 14 chr11 60706949 60707092 -61136764 - B1F2 SINE Alu -1 148 6 5 1048 206 148 0 53 chr11 60707122 60707179 -61136677 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1048 1209 55 0 7 chr11 60707179 60707326 -61136530 - B1_Mm SINE Alu 0 147 2 5 1048 1044 170 74 10 chr11 60707338 60707540 -61136316 - B3 SINE B2 -1 215 1 5 1048 845 187 0 0 chr11 60707549 60707683 -61136173 - B1_Mur1 SINE Alu -6 143 10 5 1048 1571 38 16 0 chr11 60707766 60707949 -61135907 - B2_Mm1a SINE B2 -7 186 1 5 1048 1407 84 16 0 chr11 60707984 60708174 -61135682 + B2_Mm1a SINE B2 1 193 0 5 1048 1205 41 0 40 chr11 60708182 60708334 -61135522 + B1_Mus2 SINE Alu 2 147 0 5 1048 894 131 7 65 chr11 60708386 60708541 -61135315 + B1_Mus1 SINE Alu 3 148 0 5 1048 825 291 0 5 chr11 60708579 60708783 -61135073 + B3 SINE B2 1 203 -13 5 1048 288 45 0 0 chr11 60708789 60708833 -61135023 + B3 SINE B2 167 210 -6 5 1048 216 263 0 0 chr11 60708890 60708928 -61134928 - B1_Mur4 SINE Alu -110 40 3 5 1048 444 189 41 21 chr11 60709381 60709478 -61134378 - B3 SINE B2 0 216 118 5 1048 256 292 100 36 chr11 60710047 60710157 -61133699 - B3 SINE B2 -94 122 6 5 1048 409 270 14 0 chr11 60710289 60710412 -61133444 + B1_Mur3 SINE Alu 1 129 -21 5 1048 479 208 0 20 chr11 60710993 60711091 -61132765 + B3A SINE B2 6 101 -97 5 1048 234 0 0 0 chr11 60711313 60711339 -61132517 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 5 1048 1097 55 7 52 chr11 60711367 60711520 -61132336 - B1_Mus1 SINE Alu 0 148 3 5 1048 427 192 0 0 chr11 60711576 60711649 -61132207 - B3A SINE B2 -96 102 30 5 1048 237 33 0 0 chr11 60711662 60711692 -61132164 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1048 1066 94 0 7 chr11 60711692 60711832 -61132024 - B1_Mus1 SINE Alu -9 139 1 5 1048 233 29 29 0 chr11 60711847 60711881 -61131975 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1048 1130 56 0 14 chr11 60711881 60712020 -61131836 - B1_Mus1 SINE Alu -8 140 2 5 1048 219 36 0 0 chr11 60712082 60712110 -61131746 + (GGCTG)n Simple_repeat Simple_repeat 1 28 0 5 1048 227 280 25 30 chr11 60712777 60712936 -61130920 + L2c LINE L2 2959 3114 -312 5 1048 30 0 0 0 chr11 60713454 60713484 -61130372 + AT_rich Low_complexity Low_complexity 1 30 0 5 1048 231 267 0 0 chr11 60713630 60713705 -61130151 + (TCCA)n Simple_repeat Simple_repeat 2 76 0 5 1048 239 295 0 0 chr11 60713741 60713802 -61130054 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 5 1048 190 322 85 11 chr11 60713802 60713896 -61129960 - L2a LINE L2 0 3426 3326 5 1048 287 250 0 15 chr11 60713900 60713965 -61129891 + PB1D10 SINE Alu 12 75 -42 5 1048 285 316 87 9 chr11 60713965 60714015 -61129841 + ID_B1 SINE B4 93 216 -8 5 1048 230 282 96 27 chr11 60714265 60714338 -61129518 + ORR1E LTR MaLR 278 355 -4 5 1048 244 200 109 0 chr11 60714423 60714478 -61129378 + PB1D7 SINE Alu 53 113 -7 5 1048 290 301 4 29 chr11 60714460 60714554 -61129302 + ID_B1 SINE B4 57 144 -148 5 1048 966 149 14 0 chr11 60714562 60714710 -61129146 - B1_Mur4 SINE Alu 0 150 1 5 1048 233 259 168 54 chr11 60714773 60714940 -61128916 - ORR1E LTR MaLR -135 224 39 5 1048 265 240 0 0 chr11 60715351 60715401 -61128455 - ID4 SINE ID -11 72 23 5 1048 1099 76 0 7 chr11 60715467 60715613 -61128243 - B1_Mus2 SINE Alu -2 145 1 5 1048 252 325 198 60 chr11 60716104 60716372 -61127484 + MLT1A0 LTR MaLR 57 361 -4 5 1048 272 259 56 11 chr11 60716654 60716744 -61127112 + ERVL-E-int LTR ERVL 492 585 -5082 5 1048 187 330 102 43 chr11 60716987 60717174 -61126682 + MIRb SINE MIR 41 238 -30 5 1048 201 39 0 0 chr11 60719900 60719926 -61123930 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 5 1048 1200 54 0 20 chr11 60720645 60720796 -61123060 + B1_Mus1 SINE Alu 1 148 0 5 1048 283 289 78 51 chr11 60721313 60721493 -61122363 - L2b LINE L2 -252 3123 2942 5 1048 191 342 55 0 chr11 60721656 60721729 -61122127 - L2b LINE L2 -800 2619 2543 5 1048 304 168 50 16 chr11 60721918 60721998 -61121858 - B1F SINE Alu -1 148 41 5 1048 1246 101 31 21 chr11 60721998 60722020 -61121836 - B2_Mm2 SINE B2 0 195 173 5 1048 969 149 0 7 chr11 60722020 60722169 -61121687 - B1_Mus1 SINE Alu 0 148 1 5 1048 1269 101 31 21 chr11 60722169 60722339 -61121517 - B2_Mm2 SINE B2 -23 172 2 5 1048 321 206 0 0 chr11 60722673 60722736 -61121120 - B1F SINE Alu -1 148 86 5 1048 1216 67 76 32 chr11 60722780 60722965 -61120891 - B2_Mm1t SINE B2 0 193 1 5 1048 1147 75 0 26 chr11 60724029 60724180 -61119676 - B1_Mus2 SINE Alu 0 147 1 5 1048 414 202 25 0 chr11 60724517 60724596 -61119260 + B3A SINE B2 1 81 -117 5 1048 988 84 28 27 chr11 60724596 60724761 -61119095 - B1_Mus1 SINE Alu -1 310 1 5 1048 427 250 21 86 chr11 60724761 60724899 -61118957 + B3A SINE B2 70 198 0 5 1048 217 337 167 10 chr11 60725287 60725491 -61118365 + L2a LINE L2 2910 3145 -281 5 1048 738 34 0 0 chr11 60725825 60725914 -61117942 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 5 1048 225 267 118 25 chr11 60726138 60726257 -61117599 + MIRb SINE MIR 23 152 -116 5 1048 330 320 177 31 chr11 60728052 60728503 -61115353 - L1ME2 LINE L1 -133 6031 5515 5 1048 1216 133 65 28 chr11 60729112 60729329 -61114527 + URR1B DNA MER1_type 1 225 0 5 1048 348 269 164 0 chr11 60729432 60729536 -61114320 + ID_B1 SINE B4 90 210 -14 5 1048 246 298 68 109 chr11 60729536 60729577 -61114279 + B1_Mus1 SINE Alu 10 148 0 5 1048 230 333 97 0 chr11 60729726 60729819 -61114037 - L2a LINE L2 -8 3418 3317 5 1048 226 258 19 67 chr11 60730426 60730530 -61113326 - L1MD3 LINE L1 -2003 5992 5894 5 1048 204 289 22 78 chr11 60731587 60731677 -61112179 + MIRm SINE MIR 51 135 -141 5 1048 180 0 0 0 chr11 60732051 60732071 -61111785 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 5 1048 334 202 54 11 chr11 60732225 60732315 -61111541 - PB1D10 SINE Alu -1 126 21 5 1048 24 0 0 0 chr11 60732349 60732373 -61111483 + AT_rich Low_complexity Low_complexity 1 24 0 5 1048 213 159 0 0 chr11 60732397 60732441 -61111415 + T-rich Low_complexity Low_complexity 2 45 0 5 1048 1140 65 0 0 chr11 60732455 60732593 -61111263 - B1_Mus1 SINE Alu -10 138 1 5 1048 294 350 64 40 chr11 60732742 60732944 -61110912 + ORR1E LTR MaLR 1 207 -152 5 1048 458 257 13 65 chr11 60733111 60733265 -61110591 - B3 SINE B2 -1 215 70 5 1048 557 206 25 0 chr11 60733505 60733642 -61110214 - B3 SINE B2 -55 140 1 5 1048 261 259 0 165 chr11 60733687 60733784 -61110072 - MTE2b LTR MaLR -298 81 1 5 1048 575 248 87 0 chr11 60733793 60733942 -61109914 - MER2 DNA MER2_type -99 246 85 5 1048 595 187 23 6 chr11 60733954 60734131 -61109725 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1048 217 338 27 27 chr11 60734145 60734218 -61109638 - ID4_ SINE ID -10 73 1 5 1048 185 0 0 39 chr11 60734440 60734466 -61109390 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 5 1048 36 23 0 0 chr11 60734547 60734590 -61109266 + AT_rich Low_complexity Low_complexity 1 43 0 5 1048 261 311 57 8 chr11 60735279 60735402 -61108454 - L1M4 LINE L1 -803 5343 5215 5 1048 1133 88 0 13 chr11 60735605 60735755 -61108101 - B1_Mus1 SINE Alu 0 148 1 5 1048 660 185 0 56 chr11 60736902 60737028 -61106828 - PB1D9 SINE Alu -1 119 1 5 1048 687 147 0 0 chr11 60737595 60737711 -61106145 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 5 1048 718 156 79 29 chr11 60737712 60737851 -61106005 - B1_Mus1 SINE Alu 0 148 3 5 1048 299 280 0 26 chr11 60737920 60737997 -61105859 + B4A SINE B4 216 290 -2 5 1048 1155 68 7 0 chr11 60739833 60739979 -61103877 + B1_Mus1 SINE Alu 2 148 0 5 1048 1492 123 269 18 chr11 60740049 60740380 -61103476 + MTC LTR MaLR 8 421 0 5 1048 727 277 89 5 chr11 60740665 60740868 -61102988 - ID_B1 SINE B4 -3 221 2 5 1048 301 286 0 0 chr11 60741553 60741630 -61102226 + PB1D10 SINE Alu 29 105 -12 5 1048 626 0 14 0 chr11 60741633 60741707 -61102149 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1048 197 250 57 45 chr11 60741844 60741932 -61101924 + MIR SINE MIR 66 154 -108 6 1048 186 275 150 0 chr11 60742016 60742096 -61101760 + MIR SINE MIR 49 140 -122 6 1048 449 110 14 0 chr11 60742491 60742564 -61101292 + (TTTC)n Simple_repeat Simple_repeat 1 74 0 6 1048 478 200 0 0 chr11 60742565 60742650 -61101206 - B1_Mur4 SINE Alu -64 86 2 6 1048 200 292 139 63 chr11 60744253 60744476 -61099380 + L2c LINE L2 3141 3380 -7 6 1048 331 272 11 0 chr11 60744494 60744586 -61099270 - L2a LINE L2 -5 3421 3329 6 1048 231 231 0 55 chr11 60746840 60746895 -61096961 + MIRm SINE MIR 216 267 -9 6 1048 1156 81 0 20 chr11 60748060 60748211 -61095645 + B1_Mus1 SINE Alu 1 148 0 6 1048 422 36 0 18 chr11 60748223 60748280 -61095576 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1048 400 310 0 0 chr11 60748349 60748436 -61095420 - RSINE1 SINE B4 -75 90 4 6 1048 192 310 110 17 chr11 60749612 60749730 -61094126 + MIR SINE MIR 56 184 -78 6 1048 1295 157 5 0 chr11 60749895 60750105 -61093751 - URR1B DNA MER1_type -10 215 5 6 1048 210 329 0 13 chr11 60750768 60750845 -61093011 + CT-rich Low_complexity Low_complexity 2 77 0 6 1048 239 300 42 53 chr11 60750845 60750940 -61092916 - ID_B1 SINE B4 -77 147 54 6 1048 335 242 0 15 chr11 60750944 60751011 -61092845 - ID4_ SINE ID -13 70 5 6 1048 285 244 0 163 chr11 60751088 60751186 -61092670 + ID_B1 SINE B4 90 171 -53 6 1048 237 315 22 0 chr11 60752624 60752716 -61091140 - MIR SINE MIR -139 123 30 6 1048 664 219 6 49 chr11 60754766 60754929 -61088927 - MLT1B LTR MaLR -234 156 1 6 1048 486 0 0 0 chr11 60755241 60755295 -61088561 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1048 189 304 51 61 chr11 60756062 60756160 -61087696 + MER5A DNA MER1_type 9 105 -84 6 1048 252 0 0 0 chr11 60758711 60758739 -61085117 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1048 189 0 0 0 chr11 60759228 60759249 -61084607 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1048 921 83 264 0 chr11 60759252 60759396 -61084460 - B2_Mm2 SINE B2 -13 182 1 6 1048 314 224 0 29 chr11 60761003 60761072 -61082784 + ID_B1 SINE B4 148 214 -10 6 1048 1378 184 138 96 chr11 60761352 60761736 -61082120 - MTD LTR MaLR -17 402 3 6 1048 874 147 28 14 chr11 60762423 60762568 -61081288 + B1_Mus1 SINE Alu 2 148 0 6 1048 495 33 0 0 chr11 60763745 60763806 -61080050 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1048 683 157 26 9 chr11 60763922 60764038 -61079818 + PB1D9 SINE Alu 3 120 0 6 1048 348 241 18 36 chr11 60764925 60765037 -61078819 - L2c LINE L2 -221 3166 3057 6 1048 26 0 0 0 chr11 60766273 60766299 -61077557 + AT_rich Low_complexity Low_complexity 1 26 0 6 1048 1224 261 69 9 chr11 60768319 60768636 -61075220 + MTEa LTR MaLR 43 378 -1 6 1048 308 329 112 20 chr11 60771399 60771551 -61072305 - MLT1J LTR MaLR -312 200 35 6 1048 23 0 0 0 chr11 60771614 60771637 -61072219 + AT_rich Low_complexity Low_complexity 1 23 0 6 1048 554 271 8 8 chr11 60771828 60771951 -61071905 + B4A SINE B4 56 178 -114 6 1048 201 197 0 0 chr11 60772115 60772181 -61071675 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1048 874 246 62 150 chr11 60772183 60772503 -61071353 - B4A SINE B4 0 292 1 6 1048 427 303 0 43 chr11 60773142 60773389 -61070467 + (CACCC)n Simple_repeat Simple_repeat 1 236 0 6 1048 341 343 0 43 chr11 60773382 60773620 -61070236 + (CACCC)n Simple_repeat Simple_repeat 1 227 0 6 1048 409 324 71 14 chr11 60773678 60773972 -61069884 - L1MC5 LINE L1 -199 7762 7452 6 1048 672 252 14 0 chr11 60774043 60774186 -61069670 + ID_B1 SINE B4 80 224 0 6 1048 203 241 48 12 chr11 60774222 60774306 -61069550 + (TATAA)n Simple_repeat Simple_repeat 1 87 0 6 1048 731 148 78 0 chr11 60774330 60774458 -61069398 - B1_Mur4 SINE Alu -7 143 6 6 1048 564 277 86 30 chr11 60774679 60774947 -61068909 - L1MA4 LINE L1 -242 7079 6797 6 1048 1125 126 51 17 chr11 60774949 60775127 -61068729 - B2_Mm2 SINE B2 -11 184 1 6 1048 1347 86 38 0 chr11 60775133 60775162 -61068694 - B2_Mm2 SINE B2 -2 193 165 6 1048 333 0 0 0 chr11 60775162 60775199 -61068657 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 6 1048 1347 86 38 0 chr11 60775199 60775355 -61068501 - B2_Mm2 SINE B2 -31 164 2 6 1048 646 308 54 16 chr11 60775414 60775599 -61068257 - B3A SINE B2 -6 192 1 6 1048 233 188 49 59 chr11 60775692 60775794 -61068062 - L1M2 LINE L1 -2809 3334 3234 6 1048 694 282 95 63 chr11 60775781 60776160 -61067696 - L1MA4 LINE L1 -573 6748 6358 6 1048 1323 272 54 48 chr11 60776194 60777058 -61066798 - L1MA4 LINE L1 -880 6284 5738 6 1048 445 259 0 26 chr11 60777058 60777173 -61066683 - B1F SINE Alu 0 149 38 6 1048 444 37 0 0 chr11 60777238 60777292 -61066564 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1048 264 77 0 0 chr11 60777292 60777331 -61066525 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1048 331 316 21 21 chr11 60777363 60777460 -61066396 - RSINE1 SINE B4 -68 97 1 6 1048 357 301 173 80 chr11 60777462 60777789 -61066067 - L1MA4 LINE L1 -3395 3769 3414 6 1048 1707 171 119 9 chr11 60777789 60777915 -61065941 - ORR1D1 LTR MaLR 0 374 244 6 1048 1220 29 50 0 chr11 60777915 60778291 -61065565 + (CAGG)n Simple_repeat Simple_repeat 1 394 0 6 1048 1707 171 119 9 chr11 60778291 60778499 -61065357 - ORR1D1 LTR MaLR -131 243 3 6 1048 241 256 92 58 chr11 60778499 60778539 -61065317 - L1M4 LINE L1 -3754 2392 2349 6 1048 1253 97 45 0 chr11 60778540 60778716 -61065140 + B2_Mm1t SINE B2 1 184 -9 6 1048 191 36 36 0 chr11 60778716 60778744 -61065112 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1048 697 201 201 0 chr11 60778745 60778909 -61064947 - B3 SINE B2 -15 201 5 6 1048 327 288 117 0 chr11 60778911 60779074 -61064782 - L1MA4 LINE L1 -3760 3404 3223 6 1048 338 320 16 8 chr11 60779289 60779415 -61064441 + L1M2c LINE L1 2098 2224 -4565 6 1048 395 308 95 131 chr11 60779594 60779610 -61064246 - RSINE1 SINE B4 -2 163 149 6 1048 225 0 0 0 chr11 60779610 60779635 -61064221 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1048 513 0 0 0 chr11 60779635 60779691 -61064165 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1048 395 308 95 131 chr11 60779691 60779841 -61064015 - RSINE1 SINE B4 -17 148 3 6 1048 611 296 37 5 chr11 60780040 60780254 -61063602 - L1MA4 LINE L1 -4269 2899 2679 6 1048 1398 199 116 0 chr11 60780302 60780604 -61063252 + MTD LTR MaLR 83 419 0 6 1048 320 309 11 11 chr11 60780609 60780704 -61063152 - B1_Mur2 SINE Alu -54 95 1 6 1048 644 308 41 57 chr11 60780724 60781213 -61062643 - L1MA4 LINE L1 -4529 2639 2159 6 1048 269 295 109 5 chr11 60781315 60781516 -61062340 - L1MA4 LINE L1 -5028 2140 1919 6 1048 592 183 0 187 chr11 60781620 60781689 -61062167 - B1_Mur4 SINE Alu -24 126 66 6 1048 1680 82 4 0 chr11 60781689 60781921 -61061935 + Lx3_Mus LINE L1 6776 7008 -1 6 1048 592 183 0 187 chr11 60781921 60782006 -61061850 - B1_Mur4 SINE Alu -85 65 1 6 1048 1239 48 7 0 chr11 60782317 60782463 -61061393 + B1_Mus1 SINE Alu 2 148 0 6 1048 368 352 12 0 chr11 60782620 60782782 -61061074 - L1MA4A LINE L1 -370 5933 5770 6 1048 342 115 0 0 chr11 60782783 60782835 -61061021 + (T)n Simple_repeat Simple_repeat 1 52 0 6 1048 1181 68 0 0 chr11 60782835 60782982 -61060874 - B1_Mus2 SINE Alu 0 147 1 6 1048 287 234 51 41 chr11 60783114 60783212 -61060644 - L1_Mur1 LINE L1 -328 5558 5460 6 1048 329 303 92 65 chr11 60784152 60784413 -61059443 - L1MC5 LINE L1 -1006 6955 6688 6 1048 260 181 324 0 chr11 60784680 60784776 -61059080 - RSINE1 SINE B4 -33 132 6 6 1048 1419 90 11 0 chr11 60785130 60785319 -61058537 - B2_Mm1t SINE B2 -1 192 2 6 1048 1165 155 111 5 chr11 60785421 60785606 -61058250 - MTC LTR MaLR -8 413 206 6 1048 483 66 40 0 chr11 60785606 60785682 -61058174 - L1Md_F2 LINE L1 0 6582 6504 6 1048 1165 155 111 5 chr11 60785682 60785703 -61058153 - MTC LTR MaLR -216 205 185 6 1048 336 138 154 0 chr11 60785737 60785802 -61058054 - MTC LTR MaLR -346 75 1 6 1048 544 208 20 0 chr11 60785802 60785902 -61057954 - B1_Mur1 SINE Alu -16 133 32 6 1048 1319 91 32 0 chr11 60786136 60786322 -61057534 + B2_Mm1a SINE B2 2 193 0 6 1048 238 292 0 58 chr11 60786506 60786575 -61057281 - MLT1A LTR MaLR -287 87 23 6 1048 180 310 69 0 chr11 60786800 60786887 -61056969 + L2a LINE L2 3320 3412 -14 6 1048 444 289 80 26 chr11 60787103 60787464 -61056392 + L1MB3 LINE L1 5751 6176 -7 6 1048 823 139 0 19 chr11 60787767 60787921 -61055935 + CT-rich Low_complexity Low_complexity 4 154 0 6 1048 352 289 110 7 chr11 60788297 60788433 -61055423 + L1M5 LINE L1 5616 5765 -359 6 1048 189 0 0 0 chr11 60788509 60788530 -61055326 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1048 258 380 34 17 chr11 60788540 60788832 -61055024 + L1M5 LINE L1 5525 5821 -358 6 1048 255 305 0 0 chr11 60789103 60789162 -61054694 + ID4_ SINE ID 25 83 0 6 1048 465 19 0 0 chr11 60789643 60789697 -61054159 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1048 672 13 0 0 chr11 60790217 60790294 -61053562 + (CA)n Simple_repeat Simple_repeat 1 77 0 6 1048 470 236 109 161 chr11 60791275 60791467 -61052389 - B3A SINE B2 -16 182 1 6 1048 1935 131 7 0 chr11 60791620 60791902 -61051954 + ORR1A3 LTR MaLR 43 326 0 6 1048 1416 233 65 23 chr11 60792658 60793009 -61050847 + ORR1D2 LTR MaLR 2 367 -3 6 1048 257 347 16 31 chr11 60793150 60793278 -61050578 - MIRb SINE MIR -77 191 66 6 1048 360 198 121 0 chr11 60793282 60793373 -61050483 + PB1D7 SINE Alu 18 119 -1 6 1048 288 289 24 0 chr11 60793499 60793582 -61050274 - MIR SINE MIR -119 143 59 6 1048 498 299 22 0 chr11 60793808 60793942 -61049914 - RMER15 LTR ERVL -23 552 416 6 1048 219 170 0 54 chr11 60794006 60794062 -61049794 + C-rich Low_complexity Low_complexity 1 53 0 6 1048 431 222 20 10 chr11 60795139 60795239 -61048617 - MIRb SINE MIR -130 138 38 6 1048 709 263 86 20 chr11 60796085 60796283 -61047573 - ID_B1 SINE B4 -2 222 12 6 1048 379 48 32 0 chr11 60796307 60796369 -61047487 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 6 1048 333 380 44 20 chr11 60796388 60796592 -61047264 - L1M4 LINE L1 -349 5825 5617 6 1048 269 294 15 0 chr11 60796958 60797026 -61046830 + Charlie16a DNA MER1_type 64 132 -210 6 1048 236 259 0 0 chr11 60797048 60797106 -61046750 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 7 1048 807 57 0 0 chr11 60797116 60797221 -61046635 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 7 1048 2085 191 10 34 chr11 60797286 60797704 -61046152 - MTD LTR MaLR 0 419 12 7 1048 750 181 10 83 chr11 60797684 60797847 -61046009 - MTD-int LTR MaLR -10 1248 1088 7 1048 1417 74 11 5 chr11 60797847 60798038 -61045818 + B2_Mm1t SINE B2 2 193 0 7 1048 750 181 10 83 chr11 60798038 60798067 -61045789 - MTD-int LTR MaLR -171 1087 1070 7 1048 361 210 122 13 chr11 60798067 60798150 -61045706 + PB1D9 SINE Alu 1 92 -28 7 1048 419 0 20 0 chr11 60798150 60798201 -61045655 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 1048 307 254 84 76 chr11 60798201 60798236 -61045620 + PB1D7 SINE Alu 93 120 0 7 1048 3342 222 93 56 chr11 60798260 60799202 -61044654 - MTD-int LTR MaLR -159 1099 123 7 1048 2198 189 14 26 chr11 60799204 60799623 -61044233 - MTD LTR MaLR -5 414 1 7 1048 1892 202 7 73 chr11 60799859 60800285 -61043571 + RMER10B LTR ERVL 1 398 0 7 1048 1172 75 0 20 chr11 60800579 60800717 -61043139 + B1_Mus2 SINE Alu 1 138 -9 7 1048 207 0 0 0 chr11 60800717 60800740 -61043116 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1048 2222 213 9 27 chr11 60800838 60801649 -61042207 + ORR1D1-int LTR MaLR 55 1370 0 7 1048 2015 168 25 3 chr11 60801649 60802013 -61041843 + ORR1D1 LTR MaLR 1 372 -2 7 1048 582 290 132 97 chr11 60804919 60805259 -61038597 - Lx8 LINE L1 -7 7466 7115 7 1048 1104 239 160 3 chr11 60805273 60805580 -61038276 + ORR1E LTR MaLR 3 357 -2 7 1048 2047 275 70 49 chr11 60805615 60805789 -61038067 + ORR1E-int LTR MaLR 20 219 -1361 7 1048 2294 137 27 155 chr11 60805789 60806272 -61037584 + MTC LTR MaLR 1 421 0 7 1048 2047 266 69 40 chr11 60806272 60806708 -61037148 + ORR1E-int LTR MaLR 220 664 -916 7 1048 653 335 20 5 chr11 60806723 60806924 -61036932 + ORR1E-int LTR MaLR 839 1042 -538 7 1048 486 179 12 0 chr11 60806927 60807011 -61036845 + ORR1E LTR MaLR 269 353 -6 7 1048 1290 259 152 29 chr11 60807017 60807470 -61036386 - Lx8 LINE L1 -373 7100 6592 7 1048 1052 283 47 77 chr11 60807702 60808107 -61035749 - Lx8 LINE L1 -892 6581 6189 7 1048 1223 288 45 39 chr11 60808162 60808507 -61035349 - Lx8 LINE L1 -12 5868 5522 7 1048 603 0 0 0 chr11 60808507 60808574 -61035282 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 7 1048 726 208 69 0 chr11 60808577 60808707 -61035149 - B1_Mur4 SINE Alu -11 139 1 7 1048 1223 288 45 39 chr11 60808707 60808874 -61034982 - Lx8 LINE L1 -359 5521 5349 7 1048 821 167 8 0 chr11 60808876 60809008 -61034848 + B1_Mur2 SINE Alu 10 142 -7 7 1048 1585 183 110 52 chr11 60809022 60809338 -61034518 + ORR1C2 LTR MaLR 1 339 -45 7 1048 750 200 69 0 chr11 60809338 60809468 -61034388 - B1_Mur4 SINE Alu -11 139 1 7 1048 1585 183 110 52 chr11 60809468 60809514 -61034342 + ORR1C2 LTR MaLR 340 384 0 7 1048 279 133 0 0 chr11 60809551 60809596 -61034260 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1048 665 314 25 0 chr11 60809599 60809844 -61034012 - Lx8 LINE L1 -544 5336 5086 7 1048 214 283 65 32 chr11 60809895 60809957 -61033899 - PB1D10 SINE Alu -6 111 48 7 1048 353 246 175 0 chr11 60810921 60811035 -61032821 - MER2 DNA MER2_type -1 344 211 7 1048 383 308 35 14 chr11 60811309 60811454 -61032402 - B1F SINE Alu -1 148 1 7 1048 248 204 0 0 chr11 60811483 60811537 -61032319 - B3 SINE B2 -2 214 161 7 1048 2208 146 88 6 chr11 60811592 60811956 -61031900 + ORR1B1 LTR MaLR 1 394 0 7 1048 507 165 0 0 chr11 60812017 60812126 -61031730 + (CA)n Simple_repeat Simple_repeat 1 109 0 7 1048 1140 196 243 10 chr11 60812655 60812959 -61030897 + MTC LTR MaLR 33 407 -14 7 1048 182 266 144 31 chr11 60814010 60814107 -61029749 - MIRb SINE MIR -130 138 31 7 1048 337 248 107 0 chr11 60814890 60815011 -61028845 - L2a LINE L2 -265 3161 3028 7 1048 287 318 205 25 chr11 60815250 60815450 -61028406 + L1MB5 LINE L1 5878 6113 -61 7 1048 562 211 36 9 chr11 60815477 60815587 -61028269 - PB1D7 SINE Alu -5 115 3 7 1048 510 263 0 34 chr11 60816160 60816278 -61027578 + PB1D7 SINE Alu 7 120 0 7 1048 308 338 26 0 chr11 60816954 60817105 -61026751 + (CCCA)n Simple_repeat Simple_repeat 2 156 0 7 1049 204 125 0 0 chr11 60818637 60818669 -61025187 + (CCCA)n Simple_repeat Simple_repeat 1 32 0 7 1049 314 296 0 0 chr11 60819414 60819679 -61024177 + (TG)n Simple_repeat Simple_repeat 1 265 0 7 1049 306 0 0 0 chr11 60819778 60819812 -61024044 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 7 1049 308 250 16 5 chr11 60820189 60820384 -61023472 + (TG)n Simple_repeat Simple_repeat 1 197 0 7 1049 195 217 56 78 chr11 60821082 60821172 -61022684 + L3 LINE CR1 4158 4245 -244 7 1049 468 0 0 0 chr11 60822092 60822144 -61021712 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1049 222 205 0 0 chr11 60822655 60822694 -61021162 + L2a LINE L2 2816 2854 -565 7 1049 497 209 0 87 chr11 60822694 60822809 -61021047 + PB1D9 SINE Alu 1 105 -15 7 1049 182 300 183 0 chr11 60822831 60822951 -61020905 + L2a LINE L2 3207 3348 -78 7 1049 721 158 318 12 chr11 60822955 60823128 -61020728 - URR1A DNA MER1_type 0 226 1 7 1049 243 225 0 0 chr11 60823555 60823626 -61020230 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 7 1049 307 317 48 66 chr11 60823698 60823913 -61019943 - MIRb SINE MIR -22 240 20 7 1049 555 16 0 0 chr11 60824075 60824139 -61019717 + (GAAAA)n Simple_repeat Simple_repeat 3 66 0 7 1049 652 197 0 50 chr11 60824252 60824391 -61019465 + B1_Mur2 SINE Alu 5 136 -13 7 1049 326 266 248 0 chr11 60824433 60824546 -61019310 + B1_Mur1 SINE Alu 2 142 -7 7 1049 435 339 136 33 chr11 60824622 60825018 -61018838 - L2a LINE L2 -42 3384 2948 7 1049 26 0 0 0 chr11 60825895 60825921 -61017935 + AT_rich Low_complexity Low_complexity 1 26 0 7 1049 337 243 14 0 chr11 60825921 60825995 -61017861 + ID4 SINE ID 3 77 -6 7 1049 278 314 124 11 chr11 60826047 60826224 -61017632 + MER2 DNA MER2_type 127 323 -22 7 1049 356 305 9 9 chr11 60827120 60827226 -61016630 + PB1D10 SINE Alu 10 115 -2 7 1049 414 100 0 0 chr11 60827285 60827345 -61016511 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1049 244 292 9 111 chr11 60827352 60827394 -61016462 + BC1_Mm scRNA scRNA 71 110 -42 7 1049 370 307 75 50 chr11 60827749 60827959 -61015897 - MIRc SINE MIR -26 242 30 7 1049 378 291 92 17 chr11 60827991 60828110 -61015746 + ID_B1 SINE B4 90 217 -7 7 1049 365 271 61 23 chr11 60829499 60829631 -61014225 - RMER15 LTR ERVL -17 558 422 7 1049 293 316 0 0 chr11 60831165 60831244 -61012612 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1049 230 276 0 146 chr11 60831261 60831350 -61012506 - MLT1K LTR MaLR -320 275 200 7 1049 192 77 0 0 chr11 60832387 60832413 -61011443 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1049 257 323 96 35 chr11 60834302 60834501 -61009355 + MIRb SINE MIR 24 234 -34 7 1049 206 350 21 55 chr11 60834553 60834698 -61009158 - MIRb SINE MIR -49 219 80 7 1049 234 287 43 85 chr11 60835294 60835435 -61008421 + FAM SINE Alu 146 280 -31 7 1049 236 287 22 22 chr11 60835563 60835679 -61008177 + (CGTG)n Simple_repeat Simple_repeat 1 116 0 7 1049 215 370 76 19 chr11 60840345 60840662 -61003194 + L2a LINE L2 2957 3291 -135 7 1049 227 322 32 64 chr11 60842277 60842433 -61001423 - L2b LINE L2 0 3375 3225 7 1049 266 0 29 0 chr11 60844452 60844486 -60999370 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1049 322 268 0 14 chr11 60844491 60844563 -60999293 - ID4 SINE ID -12 71 1 7 1049 283 329 107 40 chr11 60844595 60844744 -60999112 + RSINE1 SINE B4 4 162 -3 7 1049 204 380 48 18 chr11 60844802 60844968 -60998888 + MIR SINE MIR 31 201 -61 7 1049 1007 167 193 6 chr11 60845010 60845191 -60998665 - B3 SINE B2 0 216 2 7 1049 212 360 90 0 chr11 60846360 60846471 -60997385 + MIRc SINE MIR 49 169 -99 7 1049 2025 201 39 2 chr11 60846966 60847404 -60996452 - RCHARR1 DNA MER1_type 0 974 521 7 1049 248 128 82 41 chr11 60847420 60847469 -60996387 - B1_Mur2 SINE Alu -3 146 96 7 1049 8236 35 1 0 chr11 60847479 60849028 -60994828 - L1Md_F2 LINE L1 0 6582 5032 7 1049 437 267 0 0 chr11 60849028 60849114 -60994742 - B1_Mur3 SINE Alu -62 87 2 7 1049 1163 213 0 14 chr11 60849134 60849348 -60994508 - B3 SINE B2 -4 212 2 7 1049 263 178 0 0 chr11 60849387 60849432 -60994424 - ORR1E LTR MaLR 0 370 326 7 1049 1122 73 61 17 chr11 60849463 60849643 -60994213 + B2_Mm2 SINE B2 8 195 0 7 1049 1215 21 35 0 chr11 60849653 60849796 -60994060 + B1_Mus1 SINE Alu 1 148 0 7 1049 226 0 0 56 chr11 60849800 60849836 -60994020 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 7 1049 707 247 108 30 chr11 60849836 60850127 -60993729 - ORR1E LTR MaLR -29 341 1 7 1049 1113 228 213 10 chr11 60850127 60850501 -60993355 - RCHARR1 DNA MER1_type -518 456 4 7 1049 522 129 0 0 chr11 60850530 60850615 -60993241 + (TCCA)n Simple_repeat Simple_repeat 2 86 0 7 1049 251 148 0 36 chr11 60850628 60850684 -60993172 + (CATA)n Simple_repeat Simple_repeat 4 57 0 7 1049 639 177 6 12 chr11 60850691 60850732 -60993124 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 7 1049 267 31 0 0 chr11 60850732 60850764 -60993092 + (CATA)n Simple_repeat Simple_repeat 2 33 0 7 1049 639 177 6 12 chr11 60850764 60850888 -60992968 + (TCCA)n Simple_repeat Simple_repeat 3 127 0 7 1049 604 173 10 0 chr11 60852764 60852868 -60990988 + B1_Mur4 SINE Alu 46 150 0 7 1049 748 137 7 28 chr11 60852916 60853059 -60990797 + URR1B DNA MER1_type 84 223 -2 7 1049 1032 155 3 3 chr11 60853951 60854244 -60989612 + CT-rich Low_complexity Low_complexity 1 293 0 7 1049 583 156 55 0 chr11 60854248 60854357 -60989499 - B1_Mur4 SINE Alu -21 129 15 7 1049 284 278 99 27 chr11 60854266 60854377 -60989479 - B4 SINE B4 -94 198 80 7 1049 218 329 27 87 chr11 60854760 60854926 -60988930 - MIRm SINE MIR -79 197 31 7 1049 301 261 32 11 chr11 60855925 60856018 -60987838 + MIRb SINE MIR 84 178 -90 7 1049 302 316 21 48 chr11 60856015 60856173 -60987683 + MIRc SINE MIR 13 173 -103 7 1049 1012 158 66 22 chr11 60857701 60857882 -60985974 + B2_Mm2 SINE B2 3 191 -4 7 1049 188 256 23 0 chr11 60858453 60858496 -60985360 - L2c LINE L2 -227 3160 3117 7 1049 233 77 0 49 chr11 60859403 60859444 -60984412 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 7 1049 1457 230 89 3 chr11 60859911 60860260 -60983596 - MTEb LTR MaLR 0 379 1 7 1049 285 104 0 0 chr11 60861411 60861441 -60982415 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1049 1222 55 0 0 chr11 60861441 60861586 -60982270 - B1_Mus1 SINE Alu 0 148 4 8 1049 285 104 0 0 chr11 60861586 60861603 -60982253 + (T)n Simple_repeat Simple_repeat 1 17 0 8 1049 1656 42 0 0 chr11 60861611 60861801 -60982055 - B2_Mm1a SINE B2 -2 191 2 8 1049 328 248 266 19 chr11 60861831 60862045 -60981811 - Lx8 LINE L1 -2 7471 7205 8 1049 576 270 98 0 chr11 60862032 60862206 -60981650 - Lx8 LINE L1 -374 7099 6909 8 1049 1565 179 25 162 chr11 60862206 60862639 -60981217 - ORR1D1 LTR MaLR 0 374 1 8 1049 1593 121 47 0 chr11 60862639 60862896 -60980960 - ORR1D1-int LTR MaLR 0 1370 1102 8 1049 287 320 39 15 chr11 60862896 60863026 -60980830 - Lx8 LINE L1 -1211 6262 6130 8 1049 227 145 15 46 chr11 60863407 60863472 -60980384 + T-rich Low_complexity Low_complexity 3 65 0 8 1049 243 313 127 0 chr11 60863509 60863659 -60980197 - Lx9 LINE L1 -1727 5917 5749 8 1049 2209 258 187 6 chr11 60863626 60864497 -60979359 - Lx8 LINE L1 0 8175 7148 8 1049 1237 222 136 136 chr11 60864502 60865075 -60978781 - RMER4B LTR ERVK -12 573 1 8 1049 740 231 27 60 chr11 60865075 60865177 -60978679 - Lx8 LINE L1 -1035 7140 7048 8 1049 775 161 79 14 chr11 60865177 60865316 -60978540 - B1_Mur1 SINE Alu -1 148 1 8 1049 740 267 80 38 chr11 60865316 60865531 -60978325 - Lx8 LINE L1 -1128 7047 6786 8 1049 7423 296 89 91 chr11 60865646 60866434 -60977422 - Lx8 LINE L1 -1382 6793 5998 8 1049 785 194 21 0 chr11 60866434 60866578 -60977278 - B1_Mur3 SINE Alu -2 147 1 8 1049 7423 283 83 108 chr11 60866578 60866686 -60977170 - Lx8 LINE L1 -585 5997 5882 8 1049 561 175 0 28 chr11 60866686 60866792 -60977064 + B1_Mur1 SINE Alu 47 149 0 8 1049 7423 283 83 108 chr11 60866792 60868108 -60975748 - Lx8 LINE L1 -585 5881 4455 8 1049 777 236 49 39 chr11 60868108 60868311 -60975545 - B3 SINE B2 -11 205 1 8 1049 7423 283 83 108 chr11 60868311 60868904 -60974952 - Lx8 LINE L1 -2128 4454 3860 8 1049 334 278 137 13 chr11 60868904 60869057 -60974799 - B3 SINE B2 -2 214 43 8 1049 7423 283 83 108 chr11 60869057 60869554 -60974302 - Lx8 LINE L1 -2128 3859 3360 8 1049 1423 82 6 0 chr11 60869554 60869736 -60974120 - B2_Mm1t SINE B2 -9 184 2 8 1049 7423 283 83 108 chr11 60869736 60869948 -60973908 - Lx8 LINE L1 -3223 3359 3121 8 1049 405 0 0 0 chr11 60869948 60869993 -60973863 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1049 7423 283 83 108 chr11 60869993 60870146 -60973710 - Lx8 LINE L1 -3462 3120 2966 8 1049 1454 60 49 0 chr11 60870146 60870331 -60973525 - B2_Mm2 SINE B2 0 195 2 8 1049 7423 283 83 108 chr11 60870331 60870469 -60973387 - Lx8 LINE L1 -3617 2965 2863 8 1049 1026 119 143 0 chr11 60870469 60870637 -60973219 - B2_Mm2 SINE B2 -3 192 1 8 1049 7423 283 83 108 chr11 60870637 60870648 -60973208 - L1_Mur3 LINE L1 -3720 2160 2160 8 1049 799 133 86 0 chr11 60870648 60870776 -60973080 - B1_Mur4 SINE Alu -8 142 4 8 1049 7423 299 78 94 chr11 60870776 60871873 -60971983 - Lx8 LINE L1 -3720 2862 1660 8 1049 356 231 38 5 chr11 60872242 60872353 -60971503 - L1MA4 LINE L1 -337 5837 5655 8 1049 21 0 0 0 chr11 60872394 60872415 -60971441 + AT_rich Low_complexity Low_complexity 1 21 0 8 1049 840 144 9 9 chr11 60872415 60872634 -60971222 + (TG)n Simple_repeat Simple_repeat 1 219 0 8 1049 421 278 200 18 chr11 60872634 60872799 -60971057 - B3A SINE B2 -2 196 2 8 1049 180 0 0 0 chr11 60872808 60872828 -60971028 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1049 869 109 0 92 chr11 60872848 60873000 -60970856 - B1_Mus1 SINE Alu -8 140 3 8 1049 365 289 48 0 chr11 60873332 60873436 -60970420 - MIR SINE MIR -88 174 66 8 1049 231 304 78 10 chr11 60875726 60875829 -60968027 - MIRb SINE MIR -123 145 36 8 1049 240 364 6 19 chr11 60876983 60877140 -60966716 + (TCCA)n Simple_repeat Simple_repeat 1 155 0 8 1049 327 309 49 21 chr11 60877911 60878053 -60965803 - LTR16C LTR ERVL -330 159 14 8 1049 408 275 113 13 chr11 60878852 60879003 -60964853 + MIR SINE MIR 70 235 -27 8 1049 408 40 0 0 chr11 60881973 60882023 -60961833 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1049 194 57 57 0 chr11 60884325 60884360 -60959496 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 8 1049 24 0 0 0 chr11 60886128 60886152 -60957704 + AT_rich Low_complexity Low_complexity 1 24 0 8 1049 477 0 0 0 chr11 60886341 60886394 -60957462 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1049 459 0 0 0 chr11 60886462 60886513 -60957343 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1049 387 0 0 0 chr11 60888845 60888888 -60954968 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1049 381 193 157 0 chr11 60888890 60888973 -60954883 - RSINE1 SINE B4 -41 124 29 8 1049 235 272 74 113 chr11 60890950 60891083 -60952773 - L2c LINE L2 -179 3208 3061 8 1049 880 142 6 12 chr11 60891621 60891785 -60952071 + CT-rich Low_complexity Low_complexity 2 164 0 8 1049 192 345 72 9 chr11 60892062 60892173 -60951683 + MIR SINE MIR 112 229 -33 8 1049 246 111 0 0 chr11 60892445 60892481 -60951375 + L1MC LINE L1 5551 5586 -758 8 1049 258 304 29 0 chr11 60892481 60892550 -60951306 + C-rich Low_complexity Low_complexity 2 72 0 8 1049 1139 45 0 0 chr11 60892776 60892910 -60950946 + B1_Mus1 SINE Alu 2 135 -13 8 1049 258 56 0 0 chr11 60892910 60892946 -60950910 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1049 732 80 0 0 chr11 60893113 60893213 -60950643 + (TTC)n Simple_repeat Simple_repeat 3 102 0 8 1049 32 26 0 0 chr11 60893661 60893700 -60950156 + AT_rich Low_complexity Low_complexity 1 39 0 8 1049 337 311 84 39 chr11 60894089 60894243 -60949613 + L1MC LINE L1 5579 5739 -594 8 1049 276 333 46 82 chr11 60894580 60894776 -60949080 - MER34 LTR ERV1 -352 190 2 8 1049 452 263 8 25 chr11 60895404 60895525 -60948331 + PB1D7 SINE Alu 2 120 0 8 1049 186 43 0 0 chr11 60896667 60896690 -60947166 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 8 1049 981 251 32 75 chr11 60897211 60897491 -60946365 + B4A SINE B4 2 269 -23 8 1049 216 0 0 0 chr11 60897521 60897545 -60946311 + (CAA)n Simple_repeat Simple_repeat 3 26 0 8 1049 972 128 0 14 chr11 60898239 60898382 -60945474 + B1_Mus1 SINE Alu 6 146 -2 8 1049 216 0 0 0 chr11 60898392 60898416 -60945440 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1049 543 267 38 0 chr11 60898718 60898849 -60945007 + MER58B DNA MER1_type 197 332 -9 8 1049 470 83 0 14 chr11 60898975 60899048 -60944808 + (TGGA)n Simple_repeat Simple_repeat 4 75 0 8 1049 270 195 73 61 chr11 60899567 60899649 -60944207 + MLT1B LTR MaLR 42 124 -266 8 1049 216 0 0 0 chr11 60900025 60900049 -60943807 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1049 294 312 87 38 chr11 60900179 60900362 -60943494 + MLT1D LTR MaLR 1 192 -313 8 1049 274 309 88 47 chr11 60900386 60900556 -60943300 + MLT1D LTR MaLR 262 438 -67 8 1049 306 0 0 0 chr11 60900557 60900591 -60943265 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1049 2110 94 3 107 chr11 60900596 60900642 -60943214 - ORR1A2 LTR MaLR -8 319 274 8 1049 396 0 0 0 chr11 60900642 60900686 -60943170 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 8 1049 2110 94 3 107 chr11 60900686 60900995 -60942861 - ORR1A2 LTR MaLR -54 273 1 8 1049 261 0 0 0 chr11 60901002 60901031 -60942825 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1049 775 190 7 49 chr11 60901047 60901191 -60942665 + B1F SINE Alu 1 138 -11 8 1049 1619 246 35 61 chr11 60901722 60902301 -60941555 - RLTR20C LTR ERVK -2 561 1 8 1049 483 234 71 9 chr11 60902310 60902422 -60941434 - B1F SINE Alu -5 144 26 8 1049 695 254 14 21 chr11 60902451 60902596 -60941260 + B1_Mur1 SINE Alu 6 149 0 8 1049 344 320 183 23 chr11 60902668 60902930 -60940926 + MT2A LTR ERVL 34 337 -196 8 1049 378 0 0 0 chr11 60902947 60902989 -60940867 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1049 342 228 4 14 chr11 60902989 60903062 -60940794 - RLTR20C LTR ERVK -102 476 372 8 1049 350 337 0 0 chr11 60905826 60905912 -60937944 + PB1 SINE Alu 28 113 -14 8 1049 664 189 112 15 chr11 60905930 60906064 -60937792 - B1_Mur1 SINE Alu -1 148 2 8 1049 999 216 20 0 chr11 60906300 60906499 -60937357 + B3 SINE B2 14 216 0 8 1049 22 0 0 0 chr11 60906654 60906676 -60937180 + AT_rich Low_complexity Low_complexity 1 22 0 8 1049 762 223 119 5 chr11 60906802 60906996 -60936860 + B3 SINE B2 1 216 0 8 1049 816 181 0 0 chr11 60907011 60907138 -60936718 + B1_Mus1 SINE Alu 1 127 -21 8 1049 558 108 0 0 chr11 60907139 60907222 -60936634 + (GGGA)n Simple_repeat Simple_repeat 4 86 0 8 1049 5462 284 87 25 chr11 60907222 60908433 -60935423 + Lx8 LINE L1 2995 4238 -1642 8 1049 3318 114 191 2 chr11 60908433 60908704 -60935152 - RMER6C LTR ERVK 0 690 378 8 1049 753 12 0 0 chr11 60908704 60908790 -60935066 + (TCTCCC)n Simple_repeat Simple_repeat 3 88 0 8 1049 3318 114 191 2 chr11 60908790 60909098 -60934758 - RMER6C LTR ERVK -313 377 3 8 1049 5462 284 87 25 chr11 60909098 60909432 -60934424 + Lx8 LINE L1 4239 4600 -1280 8 1049 1759 242 117 20 chr11 60909432 60909988 -60933868 - RMER19C LTR ERVK -1 610 1 8 1049 5462 288 98 28 chr11 60909988 60912310 -60931546 + Lx8 LINE L1 4601 7147 -326 8 1049 1008 187 207 9 chr11 60912848 60913116 -60930740 - MTD LTR MaLR 0 421 136 8 1049 230 209 0 0 chr11 60913145 60913188 -60930668 - MTD LTR MaLR -242 179 137 8 1049 621 261 18 29 chr11 60913821 60913977 -60929879 - MTD LTR MaLR -240 179 25 8 1049 207 0 0 0 chr11 60913977 60914000 -60929856 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1049 621 261 18 29 chr11 60914000 60914013 -60929843 - MTD LTR MaLR -395 24 12 8 1049 760 289 153 19 chr11 60914126 60914433 -60929423 + MLT1A1 LTR MaLR 61 408 0 8 1049 918 297 58 21 chr11 60915128 60915510 -60928346 - Lx8 LINE L1 -973 6500 6105 8 1049 1023 266 116 21 chr11 60915528 60915828 -60928028 + MTD LTR MaLR 18 351 -68 8 1049 279 0 0 0 chr11 60915828 60915859 -60927997 + (TCTCC)n Simple_repeat Simple_repeat 3 33 0 8 1049 1023 266 116 21 chr11 60915859 60915885 -60927971 + MTD LTR MaLR 352 375 -44 8 1049 530 230 0 0 chr11 60915921 60916021 -60927835 - B1_Mur1 SINE Alu -5 144 45 8 1049 223 232 0 0 chr11 60916022 60916078 -60927778 + C-rich Low_complexity Low_complexity 1 56 0 8 1049 2384 79 17 19 chr11 60916089 60916441 -60927415 - RLTR10C LTR ERVK -30 335 1 8 1049 210 227 23 0 chr11 60916441 60916485 -60927371 + C-rich Low_complexity Low_complexity 2 46 0 8 1049 841 249 185 41 chr11 60916527 60916841 -60927015 - ORR1D1 LTR MaLR 0 374 16 8 1049 1055 121 25 0 chr11 60916860 60917017 -60926839 - RLTR17 LTR ERVK -329 363 203 8 1049 2110 206 126 11 chr11 60917049 60917495 -60926361 - ORR1D1-int LTR MaLR 0 1370 874 8 1049 426 276 27 128 chr11 60917755 60917942 -60925914 + RMER30 DNA MER1_type 6 173 -29 8 1049 198 0 0 0 chr11 60919176 60919198 -60924658 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1049 917 160 35 0 chr11 60920158 60920302 -60923554 - B1_Mur4 SINE Alu -1 149 1 8 1049 1075 197 39 0 chr11 60920778 60920986 -60922870 + B3 SINE B2 1 216 0 8 1049 925 112 0 0 chr11 60920986 60921111 -60922745 + B1_Mus2 SINE Alu 2 126 -21 8 1049 356 331 49 7 chr11 60923260 60923403 -60920453 - L2a LINE L2 -287 3139 2991 8 1049 432 0 0 0 chr11 60923438 60923486 -60920370 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1049 1340 52 46 6 chr11 60924736 60924909 -60918947 + B2_Mm2 SINE B2 2 181 -14 9 1049 367 291 47 52 chr11 60925009 60925219 -60918637 - MLT1A1 LTR MaLR -9 399 156 9 1049 443 250 28 9 chr11 60925219 60925328 -60918528 + PB1D10 SINE Alu 5 115 -2 9 1049 273 300 102 124 chr11 60925328 60925399 -60918457 - MLT1A1 LTR MaLR -219 155 90 9 1049 885 115 72 0 chr11 60925424 60925563 -60918293 + B1_Mur4 SINE Alu 1 149 -1 9 1049 187 286 79 0 chr11 60925684 60925747 -60918109 + L2 LINE L2 2849 2916 -503 9 1049 321 291 127 0 chr11 60926142 60926307 -60917549 + L1ME3B LINE L1 5691 5876 -364 9 1049 369 0 0 0 chr11 60927202 60927243 -60916613 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1049 1434 255 41 25 chr11 60927672 60928034 -60915822 + MTE2b LTR MaLR 1 368 -11 9 1049 411 132 0 0 chr11 60928104 60928172 -60915684 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1049 311 293 68 113 chr11 60928187 60928216 -60915640 + L1MEg LINE L1 1862 1887 -4197 9 1049 902 31 0 37 chr11 60928216 60928351 -60915505 + L1Md_F2 LINE L1 6453 6582 0 9 1049 311 293 68 113 chr11 60928351 60928388 -60915468 + L1MEg LINE L1 1888 1919 -4165 9 1049 1455 84 16 0 chr11 60928388 60928579 -60915277 + B2_Mm2 SINE B2 1 194 -1 9 1049 311 293 68 113 chr11 60928579 60928688 -60915168 + L1MEg LINE L1 1920 2030 -4054 9 1049 1358 100 11 0 chr11 60928689 60928879 -60914977 + B2_Mm1t SINE B2 2 193 0 9 1049 228 299 28 100 chr11 60928903 60929008 -60914848 + L1MEg LINE L1 851 950 -5134 9 1049 906 195 0 0 chr11 60929008 60929157 -60914699 + B1_Mur2 SINE Alu 1 149 0 9 1049 228 299 28 100 chr11 60929157 60929300 -60914556 + L1MEg LINE L1 951 1081 -5003 9 1049 360 254 0 0 chr11 60929342 60929409 -60914447 - ID4_ SINE ID -15 68 2 9 1049 409 315 50 100 chr11 60929492 60929852 -60914004 - ORR1E LTR MaLR -16 343 2 9 1049 298 341 85 25 chr11 60930131 60930332 -60913524 + MIRc SINE MIR 17 234 -34 9 1049 1241 99 15 30 chr11 60930498 60930695 -60913161 - B2_Mm2 SINE B2 0 195 2 9 1049 2443 84 142 11 chr11 60930705 60931065 -60912791 - MTB_Mm LTR MaLR 0 407 1 9 1049 635 243 27 27 chr11 60931181 60931329 -60912527 - B1F SINE Alu 0 149 2 9 1049 2533 153 7 26 chr11 60931428 60931857 -60911999 + MTC LTR MaLR 1 421 0 9 1049 5708 153 128 33 chr11 60931857 60933004 -60910852 + MTC-int LTR MaLR 2 1258 0 9 1049 2531 167 2 19 chr11 60933004 60933432 -60910424 + MTC LTR MaLR 1 421 0 9 1049 289 333 0 32 chr11 60934194 60934287 -60909569 + RSINE1 SINE B4 45 134 -31 9 1049 270 312 101 64 chr11 60934639 60934944 -60908912 - MTEb LTR MaLR -4 375 43 9 1049 1302 68 0 0 chr11 60935006 60935169 -60908687 + B2_Mm1t SINE B2 1 163 -30 9 1049 699 35 0 0 chr11 60935169 60935255 -60908601 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 9 1049 1419 104 25 87 chr11 60935264 60935505 -60908351 - URR1A DNA MER1_type 0 226 1 9 1049 21 36 0 0 chr11 60935650 60935678 -60908178 + AT_rich Low_complexity Low_complexity 1 28 0 9 1049 1214 61 0 0 chr11 60935783 60935930 -60907926 + B1_Mus2 SINE Alu 1 147 0 9 1049 339 232 0 0 chr11 60937181 60937263 -60906593 + (TATG)n Simple_repeat Simple_repeat 4 85 0 9 1049 641 185 0 43 chr11 60937274 60937460 -60906396 + (TATG)n Simple_repeat Simple_repeat 1 178 0 9 1049 950 192 3 3 chr11 60937819 60938171 -60905685 + CT-rich Low_complexity Low_complexity 1 351 0 9 1049 403 282 170 47 chr11 60938208 60938379 -60905477 - ID_B1 SINE B4 -21 203 12 9 1049 250 282 236 5 chr11 60938396 60938599 -60905257 - L1MA7 LINE L1 -172 6128 5879 9 1049 1358 99 15 15 chr11 60938622 60938817 -60905039 - B2_Mm2 SINE B2 0 195 1 9 1049 934 224 9 28 chr11 60938818 60939034 -60904822 - B3 SINE B2 -3 213 2 9 1049 288 0 0 0 chr11 60939049 60939081 -60904775 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 1049 772 200 0 7 chr11 60939081 60939214 -60904642 - B1_Mus2 SINE Alu -13 134 2 9 1049 670 201 140 0 chr11 60939232 60939396 -60904460 - L1MA7 LINE L1 -420 5871 5685 9 1049 343 214 126 0 chr11 60939550 60939653 -60904203 + PB1D10 SINE Alu 2 117 0 9 1049 183 284 232 12 chr11 60939675 60939757 -60904099 - MIR SINE MIR -62 200 101 9 1049 274 321 42 49 chr11 60939819 60939963 -60903893 - L2c LINE L2 -206 3181 3039 9 1049 1183 67 0 39 chr11 60940877 60941033 -60902823 + B1_Mur4 SINE Alu 1 150 0 9 1049 40 21 0 0 chr11 60941522 60941569 -60902287 + AT_rich Low_complexity Low_complexity 1 47 0 9 1049 967 141 21 0 chr11 60941675 60941817 -60902039 + B1_Mur2 SINE Alu 2 146 -3 9 1049 606 63 0 0 chr11 60941926 60942005 -60901851 + (TA)n Simple_repeat Simple_repeat 2 80 0 9 1049 186 43 0 0 chr11 60942069 60942092 -60901764 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1049 1197 68 0 0 chr11 60942092 60942239 -60901617 - B1_Mm SINE Alu 0 147 1 9 1049 898 111 14 22 chr11 60942413 60942551 -60901305 - B1_Mus1 SINE Alu 0 148 12 9 1049 767 309 89 55 chr11 60943237 60943785 -60900071 - L1MB7 LINE L1 -76 6968 6402 9 1049 265 246 68 15 chr11 60943859 60943991 -60899865 - L1MB7 LINE L1 -744 6294 6156 9 1049 935 150 7 20 chr11 60944862 60945012 -60898844 - B1_Mur3 SINE Alu 0 149 2 9 1049 676 281 97 34 chr11 60945143 60945733 -60898123 - L1MB7 LINE L1 -1232 5774 5144 9 1049 332 88 18 0 chr11 60945743 60945800 -60898056 + (TATG)n Simple_repeat Simple_repeat 4 61 0 9 1049 435 325 71 18 chr11 60946025 60946307 -60897549 - L1MB7 LINE L1 -2192 4808 4512 9 1049 675 182 80 7 chr11 60946382 60946520 -60897336 - B1_Mur3 SINE Alu 0 149 2 9 1049 380 328 43 36 chr11 60946662 60946801 -60897055 - L1MB7 LINE L1 -3901 3107 2968 9 1049 250 267 181 62 chr11 60946815 60946837 -60897019 - B3A SINE B2 -5 193 15 9 1049 542 248 94 7 chr11 60946837 60946975 -60896881 - RSINE1 SINE B4 0 165 16 9 1049 454 331 58 58 chr11 60946992 60947284 -60896572 - L1MB7 LINE L1 -4159 2849 2558 9 1049 411 279 0 135 chr11 60947301 60947442 -60896414 + PB1 SINE Alu 6 127 0 9 1049 347 300 12 0 chr11 60947449 60947529 -60896327 + ID SINE ID 2 82 -142 9 1049 680 200 7 0 chr11 60947554 60947709 -60896147 + (CA)n Simple_repeat Simple_repeat 2 157 0 9 1049 288 77 0 0 chr11 60947709 60947748 -60896108 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 9 1049 646 191 76 56 chr11 60947754 60947898 -60895958 + B1_Mur1 SINE Alu 3 149 0 9 1049 906 224 125 0 chr11 60947900 60948092 -60895764 + B3 SINE B2 1 216 0 9 1049 346 227 33 20 chr11 60948199 60948322 -60895534 - L1MB7 LINE L1 -4674 2428 2219 9 1049 249 33 0 0 chr11 60948415 60948445 -60895411 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1050 412 275 104 22 chr11 60948484 60948618 -60895238 - RSINE1 SINE B4 -18 147 3 9 1050 1562 52 16 0 chr11 60948670 60948862 -60894994 - B2_Mm2 SINE B2 0 195 1 9 1050 1275 48 0 0 chr11 60948929 60949076 -60894780 - B1_Mm SINE Alu 0 147 1 9 1050 576 0 0 0 chr11 60949081 60949145 -60894711 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 9 1050 1195 64 0 0 chr11 60949147 60949288 -60894568 - B1_Mus2 SINE Alu -6 141 1 9 1050 210 91 0 0 chr11 60949290 60949323 -60894533 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1050 280 286 24 0 chr11 60949325 60949409 -60894447 + CT-rich Low_complexity Low_complexity 3 88 0 9 1050 252 296 0 0 chr11 60949419 60949473 -60894383 - tRNA-Ala-GCY_ tRNA tRNA -11 64 11 9 1050 271 250 24 0 chr11 60949618 60949702 -60894154 - L1MB7 LINE L1 -4985 2023 1938 9 1050 461 266 102 11 chr11 60949731 60949917 -60893939 - L1MA6 LINE L1 -27 6273 6071 9 1050 808 298 63 14 chr11 60949930 60950297 -60893559 - L1MA6 LINE L1 -275 6025 5641 9 1050 1724 163 48 21 chr11 60950307 60950640 -60893216 - ORR1D1 LTR MaLR -32 342 1 9 1050 489 284 201 8 chr11 60950642 60950956 -60892900 - L1MA6 LINE L1 -660 5643 5270 9 1050 387 0 0 0 chr11 60952266 60952309 -60891547 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1050 187 226 30 61 chr11 60952355 60952421 -60891435 - L2 LINE L2 -2889 530 467 9 1050 2698 61 3 0 chr11 60952840 60953166 -60890690 - ORR1A2 LTR MaLR 0 327 1 9 1050 849 241 85 0 chr11 60953384 60953583 -60890273 + B3 SINE B2 1 216 0 9 1050 234 0 0 0 chr11 60954494 60954520 -60889336 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1050 229 204 0 0 chr11 60954541 60954595 -60889261 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1050 259 167 0 20 chr11 60955214 60955263 -60888593 - L1MA6 LINE L1 -107 6193 6146 9 1050 996 128 6 11 chr11 60955580 60955761 -60888095 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1050 225 0 0 0 chr11 60955772 60955797 -60888059 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 1050 436 209 98 23 chr11 60956340 60956472 -60887384 - RLTR42-int LTR ERVK -642 4880 4739 9 1050 566 278 28 0 chr11 60957529 60957673 -60886183 - B1_Mur3 SINE Alu 0 149 2 9 1050 442 228 119 36 chr11 60957940 60958108 -60885748 - RLTR42-int LTR ERVK -1088 4434 4253 9 1050 670 224 128 41 chr11 60958382 60958601 -60885255 - RLTR42-int LTR ERVK -1283 4239 4002 9 1050 677 45 11 0 chr11 60958640 60958729 -60885127 + (TC)n Simple_repeat Simple_repeat 2 91 0 9 1050 349 312 48 83 chr11 60958802 60959054 -60884802 + L1MB7 LINE L1 5923 6165 -19 9 1050 201 94 0 0 chr11 60959951 60959983 -60883873 + (CATG)n Simple_repeat Simple_repeat 4 35 0 9 1050 317 329 21 7 chr11 60961486 60961630 -60882226 + (TG)n Simple_repeat Simple_repeat 1 146 0 9 1050 352 319 98 37 chr11 60961922 60962137 -60881719 - MLT1B LTR MaLR -53 414 161 9 1050 407 265 86 0 chr11 60962154 60962271 -60881585 - MLT1B LTR MaLR -261 129 3 9 1050 831 221 83 6 chr11 60963479 60963647 -60880209 + B3 SINE B2 1 181 -35 9 1050 739 149 262 18 chr11 60964472 60964636 -60879220 - B3 SINE B2 -10 206 3 9 1050 459 169 229 0 chr11 60965015 60965133 -60878723 - B1_Mur1 SINE Alu 0 149 5 9 1050 264 59 0 0 chr11 60967920 60967954 -60875902 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1050 346 304 135 44 chr11 60969965 60970315 -60873541 + MLT1B LTR MaLR 6 490 -15 9 1050 760 225 66 0 chr11 60971024 60971175 -60872681 + B3 SINE B2 30 190 -26 9 1050 415 192 13 13 chr11 60971288 60971367 -60872489 - ID4 SINE ID -2 81 3 9 1050 563 259 131 63 chr11 60971408 60971660 -60872196 + B4A SINE B4 1 269 -23 9 1050 397 204 8 35 chr11 60974377 60974486 -60869370 - B1_Mur3 SINE Alu -5 115 7 9 1050 499 189 41 21 chr11 60974515 60974612 -60869244 + PB1D7 SINE Alu 14 112 -8 9 1050 281 205 108 0 chr11 60975349 60975432 -60868424 + L1ME1 LINE L1 6088 6179 0 9 1050 431 176 0 0 chr11 60976844 60976912 -60866944 + B1_Mus1 SINE Alu 27 94 -54 9 1050 252 143 0 0 chr11 60976914 60976956 -60866900 + (TGGGGG)n Simple_repeat Simple_repeat 6 47 0 9 1050 456 145 814 6 chr11 60977410 60977571 -60866285 + MTD LTR MaLR 54 344 -75 9 1050 180 265 20 20 chr11 60977957 60978007 -60865849 + L4 LINE RTE 1702 1751 -278 1 1050 572 343 68 36 chr11 60978457 60978705 -60865151 + B4A SINE B4 5 260 -32 1 1050 937 215 117 56 chr11 60979139 60979524 -60864332 - RLTR20A LTR ERVK -141 410 5 1 1050 371 272 0 0 chr11 60979755 60979836 -60864020 - ID4 SINE ID -1 82 2 1 1050 243 224 84 84 chr11 60980860 60981026 -60862830 + L1MC LINE L1 2787 2952 -3194 1 1050 792 181 15 8 chr11 60981028 60981162 -60862694 + B1_Mus2 SINE Alu 2 136 -11 1 1050 276 310 26 26 chr11 60981293 60981409 -60862447 + PB1D10 SINE Alu 1 116 -1 1 1050 423 244 23 0 chr11 60981416 60981502 -60862354 + ID_B1 SINE B4 84 171 -53 1 1050 236 272 0 12 chr11 60982176 60982258 -60861598 + A-rich Low_complexity Low_complexity 4 84 0 1 1050 199 93 23 23 chr11 60983006 60983050 -60860806 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1050 959 184 59 30 chr11 60983429 60983631 -60860225 + B3 SINE B2 5 212 -4 1 1050 443 273 123 20 chr11 60983967 60984113 -60859743 - RSINE1 SINE B4 -2 163 3 1 1050 553 250 0 9 chr11 60984573 60984686 -60859170 + PB1D10 SINE Alu 1 112 -5 1 1050 1221 35 7 7 chr11 60985784 60985929 -60857927 - B1_Mus2 SINE Alu -1 146 2 1 1050 374 299 125 13 chr11 60986091 60986315 -60857541 - L1P5 LINE L1 -556 5600 5352 1 1050 186 43 0 0 chr11 60986317 60986340 -60857516 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1 1050 355 245 87 10 chr11 60986799 60986902 -60856954 + PB1D7 SINE Alu 9 119 -1 1 1050 505 239 18 9 chr11 60987070 60987180 -60856676 + B1_Mur3 SINE Alu 5 115 -34 1 1050 900 76 17 0 chr11 60987182 60987300 -60856556 + PB1D9 SINE Alu 1 120 0 1 1050 21 57 0 0 chr11 60988396 60988431 -60855425 + GC_rich Low_complexity Low_complexity 1 35 0 1 1050 189 147 0 0 chr11 60988542 60988576 -60855280 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 1 1050 398 163 62 11 chr11 60989891 60989976 -60853880 + PB1 SINE Alu 33 115 -5 1 1050 287 276 18 71 chr11 60990021 60990134 -60853722 + MER2B DNA MER2_type 224 330 -6 1 1050 427 287 23 113 chr11 60990277 60990454 -60853402 + MT2B LTR ERVL 97 257 -344 1 1050 754 164 8 8 chr11 60990363 60990486 -60853370 + B1_Mus2 SINE Alu 12 134 -13 1 1050 217 295 118 50 chr11 60990536 60990757 -60853099 + L2a LINE L2 3058 3293 -133 1 1050 831 239 70 15 chr11 60990801 60991001 -60852855 - ID_B1 SINE B4 -13 211 1 1 1050 2557 132 37 5 chr11 60991119 60991523 -60852333 - MTC LTR MaLR -4 417 1 1 1050 3403 234 108 16 chr11 60991761 60992611 -60851245 + L1_Rod LINE L1 1873 2807 -3040 1 1050 216 0 0 0 chr11 60992611 60992635 -60851221 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1050 3403 234 108 16 chr11 60992635 60992975 -60850881 + L1_Rod LINE L1 2808 3171 -2676 1 1050 1218 61 0 0 chr11 60992986 60993133 -60850723 + B1_Mus2 SINE Alu 1 147 0 1 1050 4813 240 57 43 chr11 60993153 60994837 -60849019 + L1_Rod LINE L1 3845 5551 -296 1 1050 325 340 21 28 chr11 60994842 60994987 -60848869 + RSINE1 SINE B4 22 165 0 1 1050 270 319 0 0 chr11 60995020 60995114 -60848742 + L1_Mur3 LINE L1 3331 3424 -2456 1 1050 655 283 75 99 chr11 60995300 60995719 -60848137 + RMER20B LTR ERVK 204 602 -25 1 1050 1059 283 42 101 chr11 60995928 60996668 -60847188 + L1_Mur3 LINE L1 3483 4178 -1702 1 1050 1836 182 152 71 chr11 60996760 60997033 -60846823 + RMER4B LTR ERVK 1 280 -305 1 1050 623 67 11 0 chr11 60997033 60997122 -60846734 + (CTGTG)n Simple_repeat Simple_repeat 3 92 0 1 1050 1836 182 152 71 chr11 60997122 60997381 -60846475 + RMER4B LTR ERVK 281 576 -9 1 1050 299 205 176 33 chr11 60997892 60997983 -60845873 - B1_Mm SINE Alu 0 147 44 1 1050 309 130 0 0 chr11 60998024 60998070 -60845786 - PB1D9 SINE Alu -65 55 10 1 1050 420 121 0 57 chr11 60998067 60998137 -60845719 + B1_Mus2 SINE Alu 75 140 -7 1 1050 297 221 375 0 chr11 60998469 60998573 -60845283 + ID_B1 SINE B4 81 223 -1 1 1050 225 0 0 0 chr11 60998574 60998599 -60845257 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1050 343 276 0 0 chr11 60998610 60998686 -60845170 + B3A SINE B2 2 77 -121 1 1050 604 268 101 0 chr11 60998792 60998960 -60844896 + B3A SINE B2 3 187 -11 1 1050 303 302 37 28 chr11 60998967 60999076 -60844780 + L1MEf LINE L1 1948 2057 -4143 1 1050 717 193 59 0 chr11 60999133 60999268 -60844588 + B1_Mur4 SINE Alu 8 150 0 1 1050 791 140 173 63 chr11 60999295 60999486 -60844370 - B3 SINE B2 -1 215 4 1 1050 683 245 93 193 chr11 60999493 60999860 -60843996 + MTE2a LTR MaLR 2 337 -42 1 1050 210 37 0 0 chr11 60999860 60999887 -60843969 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1050 683 245 93 193 chr11 60999887 60999939 -60843917 + MTE2a LTR MaLR 338 379 0 1 1050 384 227 45 9 chr11 61000118 61000229 -60843627 - PB1D10 SINE Alu -1 116 2 1 1050 884 234 86 5 chr11 61000264 61000462 -60843394 + B3 SINE B2 1 214 -2 2 1050 2288 115 9 0 chr11 61000656 61000979 -60842877 - ORR1A3 LTR MaLR 0 326 1 3 1050 346 224 0 0 chr11 61001058 61001125 -60842731 + RSINE1 SINE B4 54 120 -45 4 1050 342 0 0 0 chr11 61001128 61001166 -60842690 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1050 794 129 16 8 chr11 61001266 61001391 -60842465 + B1_Mm SINE Alu 22 147 0 6 1050 1440 79 5 0 chr11 61002277 61002466 -60841390 + B2_Mm1a SINE B2 2 191 -2 7 1050 1555 93 175 63 chr11 61002923 61003209 -60840647 + ORR1A2 LTR MaLR 1 318 -9 8 1050 210 239 0 0 chr11 61003683 61003729 -60840127 + BC1_Mm scRNA scRNA 49 94 -58 9 1050 329 276 112 52 chr11 61003739 61003774 -60840082 - MER65D LTR ERV1 -175 298 267 1 1050 2032 144 105 3 chr11 61003774 61004107 -60839749 + ORR1B2 LTR MaLR 1 367 0 1 1050 329 276 112 52 chr11 61004107 61004205 -60839651 - MER65D LTR ERV1 -207 266 157 1 1050 574 240 44 60 chr11 61004667 61004849 -60839007 + LTR65 LTR ERV1 315 493 -176 1 1050 615 268 35 0 chr11 61005213 61005355 -60838501 + RSINE1 SINE B4 4 150 -15 1 1050 278 318 91 27 chr11 61005513 61005623 -60838233 + B3A SINE B2 82 198 0 1 1050 249 370 0 0 chr11 61005690 61005763 -60838093 + ID2 SINE ID 9 81 -2 1 1050 355 169 31 31 chr11 61005847 61005873 -60837983 + polypyrimidine Low_complexity Low_complexity 104 128 0 1 1050 3573 30 0 128 chr11 61005873 61006373 -60837483 - RLTR10C LTR ERVK 0 436 1 1 1050 355 169 31 31 chr11 61006373 61006474 -60837382 + CT-rich Low_complexity Low_complexity 1 103 0 1 1050 322 278 0 0 chr11 61006476 61006546 -60837310 - ID4 SINE ID -72 80 11 1 1050 656 242 60 7 chr11 61006686 61006719 -60837137 - RSINE1 SINE B4 -4 161 125 2 1050 345 24 0 0 chr11 61006719 61006761 -60837095 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1050 656 242 60 7 chr11 61006761 61006877 -60836979 - RSINE1 SINE B4 -41 124 4 2 1050 216 196 20 0 chr11 61007803 61007854 -60836002 + GA-rich Low_complexity Low_complexity 2 53 0 2 1050 1446 89 5 0 chr11 61008589 61008780 -60835076 + B2_Mm1t SINE B2 1 192 -1 2 1050 3098 128 70 2 chr11 61008780 61009285 -60834571 - RMER1A Other Other -13 1017 478 2 1050 475 240 8 39 chr11 61009282 61009412 -60834444 - L1M2 LINE L1 -1451 4692 4567 2 1050 527 276 141 15 chr11 61009414 61009683 -60834173 - L1_Mur3 LINE L1 -1707 4173 3871 2 1050 296 314 30 59 chr11 61009700 61009971 -60833885 - L1M2 LINE L1 -3079 3061 2799 2 1050 465 306 30 50 chr11 61009986 61010283 -60833573 - L1M2 LINE L1 -3448 2695 2370 2 1050 263 267 13 0 chr11 61010338 61010413 -60833443 - L1M2 LINE L1 -4240 1640 1565 2 1050 519 17 0 0 chr11 61010886 61010946 -60832910 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1050 1040 266 152 35 chr11 61010954 61011407 -60832449 - Lx8 LINE L1 -149 7324 6819 2 1050 489 17 0 0 chr11 61011470 61011528 -60832328 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1050 25 31 0 0 chr11 61013057 61013089 -60830767 + AT_rich Low_complexity Low_complexity 1 32 0 3 1050 203 252 252 0 chr11 61014610 61014729 -60829127 + MIR SINE MIR 77 225 -37 3 1050 292 103 319 70 chr11 61014824 61014937 -60828919 - B2_Mm2 SINE B2 -8 187 47 3 1050 1186 96 12 6 chr11 61014973 61015140 -60828716 - B2_Mm2 SINE B2 -26 169 2 3 1050 1567 153 22 145 chr11 61017065 61017431 -60826425 + ORR1B2 LTR MaLR 2 322 -45 3 1050 1166 112 12 0 chr11 61017429 61017598 -60826258 + B2_Mm1t SINE B2 14 184 -9 3 1050 460 99 14 14 chr11 61017577 61017649 -60826207 + ORR1B2 LTR MaLR 307 378 0 3 1050 885 293 56 38 chr11 61017800 61018324 -60825532 - L1MB7 LINE L1 -191 5993 5455 3 1050 824 308 75 80 chr11 61018408 61018757 -60825099 - ORR1E LTR MaLR -12 347 1 3 1050 192 77 0 0 chr11 61019157 61019183 -60824673 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1050 258 95 0 0 chr11 61022794 61022836 -60821020 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1050 627 278 46 71 chr11 61022863 61023146 -60820710 - B4 SINE B4 -16 276 1 4 1050 602 207 12 20 chr11 61024153 61024411 -60819445 + GA-rich Low_complexity Low_complexity 1 255 0 4 1050 286 264 195 38 chr11 61024811 61024996 -60818860 - B3 SINE B2 -1 215 2 4 1050 185 333 14 55 chr11 61028324 61028397 -60815459 - L2c LINE L2 -32 3355 3286 4 1050 261 0 0 0 chr11 61029416 61029445 -60814411 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1050 367 264 21 30 chr11 61030812 61030925 -60812931 + MIRb SINE MIR 28 147 -121 4 1050 967 196 17 0 chr11 61032684 61032857 -60810999 - MT2A LTR ERVL -73 460 285 4 1050 203 158 33 50 chr11 61033315 61033375 -60810481 + T-rich Low_complexity Low_complexity 6 64 0 4 1050 502 254 24 38 chr11 61033565 61033748 -60810108 + Lx8 LINE L1 5779 5961 -1683 4 1050 451 256 25 17 chr11 61033847 61033966 -60809890 + Lx8 LINE L1 6205 6324 -1149 4 1050 369 291 49 67 chr11 61033989 61034326 -60809530 - RLTR11A2 LTR ERVK -18 509 161 4 1050 333 215 0 0 chr11 61034377 61034442 -60809414 - RLTR11A2 LTR ERVK -462 65 1 4 1050 785 270 33 41 chr11 61034442 61034712 -60809144 + Lx8 LINE L1 6335 6602 -871 4 1050 265 233 0 16 chr11 61034715 61034776 -60809080 + RLTR11A LTR ERVK 13 72 -456 5 1050 248 70 0 23 chr11 61034799 61034843 -60809013 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 5 1050 1232 41 7 0 chr11 61034848 61034993 -60808863 - B1_Mus2 SINE Alu -1 146 1 5 1050 2413 129 20 15 chr11 61035000 61035400 -60808456 + RLTR11A LTR ERVK 126 527 -1 5 1050 333 232 159 74 chr11 61035435 61035598 -60808258 - MLT1B LTR MaLR -212 178 2 5 1050 332 291 76 17 chr11 61035611 61035730 -60808126 + MER67C LTR ERV1 443 568 -143 5 1050 181 53 0 73 chr11 61036290 61036331 -60807525 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1050 541 301 0 22 chr11 61036344 61036483 -60807373 + RSINE1 SINE B4 2 137 -28 5 1050 432 286 133 4 chr11 61036568 61036790 -60807066 - L1MA4A LINE L1 -400 5891 5634 5 1050 25 31 0 0 chr11 61036795 61036827 -60807029 + AT_rich Low_complexity Low_complexity 1 32 0 5 1050 955 276 90 94 chr11 61037242 61037730 -60806126 + RLTR18 LTR ERVK 26 511 -105 5 1050 643 216 97 58 chr11 61038357 61038563 -60805293 + ID_B1 SINE B4 3 216 -8 6 1050 279 365 61 45 chr11 61039034 61039166 -60804690 - LTR33B LTR ERVL -339 164 31 6 1050 476 254 25 25 chr11 61040429 61040550 -60803306 - RLTR23 LTR ERV1 0 430 310 6 1050 242 284 161 0 chr11 61041725 61041806 -60802050 + MLT1A0 LTR MaLR 211 304 -61 6 1050 252 324 0 0 chr11 61041976 61042044 -60801812 + CT-rich Low_complexity Low_complexity 2 69 0 6 1050 322 271 59 0 chr11 61042430 61042515 -60801341 + MTE2b LTR MaLR 9 98 -281 6 1050 1274 39 0 0 chr11 61042543 61042696 -60801160 + L1Md_F2 LINE L1 5434 5586 -297 6 1050 8379 44 0 1 chr11 61042696 61043692 -60800164 + L1Md_F2 LINE L1 5587 6581 -1 6 1050 454 227 0 20 chr11 61043895 61043994 -60799862 - ID_B1 SINE B4 0 224 128 6 1050 413 207 89 16 chr11 61043994 61044017 -60799839 - B1F SINE Alu 0 148 18 6 1050 4004 48 2 14 chr11 61044030 61044532 -60799324 - RLTR1C LTR ERV1 -7 496 1 6 1050 308 241 51 0 chr11 61044532 61044611 -60799245 - ID_B1 SINE B4 -125 99 17 6 1050 640 282 140 36 chr11 61045752 61046109 -60797747 - RLTR11A2 LTR ERVK -6 521 128 7 1050 1606 193 50 149 chr11 61046799 61047274 -60796582 + RLTR18B LTR ERVK 43 470 -42 7 1050 1320 173 19 11 chr11 61047290 61047553 -60796303 + RMER10B LTR ERVL 1 265 -133 7 1050 432 0 0 0 chr11 61047553 61047601 -60796255 + (TCTCC)n Simple_repeat Simple_repeat 2 49 0 7 1050 955 164 78 21 chr11 61047601 61047794 -60796062 + RMER10B LTR ERVL 195 398 0 7 1050 304 307 29 29 chr11 61047797 61047901 -60795955 + MLT2B4 LTR ERVL 88 191 -365 7 1050 452 242 156 22 chr11 61047891 61048026 -60795830 - RLTR18B LTR ERVK -95 417 265 7 1050 256 325 176 13 chr11 61048822 61048975 -60794881 + Tigger5 DNA MER2_type 2175 2352 -54 7 1050 570 15 0 0 chr11 61049027 61049094 -60794762 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1050 286 292 2 11 chr11 61049950 61050036 -60793820 - MIR SINE MIR -94 114 33 7 1050 516 274 80 20 chr11 61051839 61052061 -60791795 + L1MA4 LINE L1 5254 5482 -818 8 1050 279 0 0 0 chr11 61052061 61052092 -60791764 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1050 516 274 80 20 chr11 61052092 61052171 -60791685 + L1MA4 LINE L1 5483 5573 -727 8 1050 1028 228 5 15 chr11 61052183 61052383 -60791473 + B3 SINE B2 9 206 -10 8 1050 216 0 0 0 chr11 61052407 61052431 -60791425 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1050 837 279 79 88 chr11 61052470 61052701 -60791155 + MTE2a LTR MaLR 6 234 -185 8 1050 780 111 0 0 chr11 61052701 61052818 -60791038 + (TC)n Simple_repeat Simple_repeat 2 118 0 8 1050 1145 76 0 40 chr11 61052818 61052969 -60790887 - B1_Mus2 SINE Alu -2 145 1 8 1050 837 262 73 92 chr11 61052969 61053088 -60790768 + MTE2a LTR MaLR 200 326 -53 8 1050 2539 118 8 45 chr11 61053088 61053469 -60790387 - ORR1B2 LTR MaLR 0 367 1 8 1050 837 262 73 92 chr11 61053469 61053527 -60790329 + MTE2a LTR MaLR 327 377 -2 8 1050 210 304 26 9 chr11 61053549 61053662 -60790194 + (CATATA)n Simple_repeat Simple_repeat 1 115 0 8 1050 353 22 22 0 chr11 61053853 61053899 -60789957 + (TTA)n Simple_repeat Simple_repeat 2 48 0 8 1050 1933 120 14 85 chr11 61054056 61054410 -60789446 + ORR1A4 LTR MaLR 1 329 0 9 1050 1323 170 196 20 chr11 61054539 61054889 -60788967 + MTC LTR MaLR 10 421 0 9 1050 378 251 170 13 chr11 61054890 61055111 -60788745 + L1MA4 LINE L1 5693 5943 -357 8 1050 734 279 40 5 chr11 61055135 61055333 -60788523 + B4A SINE B4 58 262 -30 9 1050 432 0 0 0 chr11 61055335 61055383 -60788473 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1050 189 0 0 0 chr11 61055510 61055531 -60788325 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1050 793 193 0 7 chr11 61055533 61055669 -60788187 + B1_Mur2 SINE Alu 3 137 -12 9 1050 368 184 184 0 chr11 61055698 61055801 -60788055 + MLT1D LTR MaLR 76 197 -308 9 1050 378 0 0 0 chr11 61056559 61056601 -60787255 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1050 980 136 0 0 chr11 61056631 61056771 -60787085 - B1_Mur4 SINE Alu -6 144 5 9 1050 867 238 137 55 chr11 61056773 61057242 -60786614 - Lx7 LINE L1 -12 7684 7040 9 1050 341 292 11 11 chr11 61059087 61059177 -60784679 - PB1 SINE Alu -16 111 22 1 1050 180 111 0 0 chr11 61060126 61060153 -60783703 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1050 1163 33 20 0 chr11 61060156 61060308 -60783548 - L1Md_F2 LINE L1 0 6582 6428 1 1050 215 354 9 94 chr11 61062914 61063020 -60780836 - MIRb SINE MIR -168 108 12 1 1050 1298 227 32 122 chr11 61064022 61064433 -60779423 + ORR1D1 LTR MaLR 1 374 0 1 1050 421 242 22 11 chr11 61064837 61064929 -60778927 + PB1D10 SINE Alu 1 93 -24 1 1050 238 242 0 127 chr11 61064933 61065004 -60778852 + MER46C DNA MER2_type 276 337 -1 1 1050 1569 279 228 28 chr11 61065075 61065938 -60777918 + Lx8 LINE L1 6439 7473 0 1 1050 823 154 7 35 chr11 61066076 61066217 -60777639 + B1_Mur3 SINE Alu 1 137 -12 1 1050 495 0 0 0 chr11 61066217 61066272 -60777584 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 1 1050 351 0 0 0 chr11 61067296 61067335 -60776521 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1050 332 311 37 96 chr11 61067876 61068011 -60775845 + RSINE1 SINE B4 3 129 -36 1 1050 1487 209 122 8 chr11 61068013 61068389 -60775467 + MTD LTR MaLR 1 419 0 1 1050 2149 214 47 37 chr11 61068420 61069021 -60774835 + MTD-int LTR MaLR 154 816 -442 1 1050 664 221 10 55 chr11 61069010 61069211 -60774645 + MTD-int LTR MaLR 1034 1225 -33 1 1050 237 33 0 0 chr11 61069238 61069268 -60774588 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1050 2152 183 28 8 chr11 61069289 61069689 -60774167 + MTD LTR MaLR 8 406 -13 1 1050 293 238 0 16 chr11 61069783 61069847 -60774009 + ID4_ SINE ID 2 64 -19 1 1050 294 115 0 0 chr11 61070599 61070651 -60773205 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1050 516 32 0 0 chr11 61070652 61070714 -60773142 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1050 1290 131 22 43 chr11 61071601 61071832 -60772024 + URR1A DNA MER1_type 1 226 0 1 1050 609 14 0 0 chr11 61072421 61072491 -60771365 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1 1050 907 119 41 70 chr11 61072491 61072663 -60771193 - B2_Mm2 SINE B2 -28 167 1 1 1050 1337 240 104 0 chr11 61072694 61073032 -60770824 - MTE2b LTR MaLR -4 375 3 1 1050 435 83 0 0 chr11 61073199 61073259 -60770597 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1050 387 250 11 54 chr11 61073380 61073473 -60770383 - RSINE1 SINE B4 -201 91 3 1 1050 183 42 0 0 chr11 61073983 61074007 -60769849 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1050 863 27 98 0 chr11 61074007 61074119 -60769737 - B1_Mus2 SINE Alu -13 134 12 1 1050 279 186 200 92 chr11 61074119 61074137 -60769719 - B4A SINE B4 -78 214 71 1 1050 742 189 35 0 chr11 61074157 61074326 -60769530 + MYSERV16_I-int LTR ERVK 2057 2231 -95 1 1050 302 221 144 52 chr11 61074851 61074982 -60768874 + MYSERV16_I-int LTR ERVK 2160 2296 -30 1 1050 216 0 0 0 chr11 61074982 61075006 -60768850 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 1050 302 221 144 52 chr11 61075006 61075027 -60768829 + MYSERV16_I-int LTR ERVK 2297 2325 -1 1 1050 876 170 7 0 chr11 61075027 61075174 -60768682 + RLTR20D LTR ERVK 1 148 -420 1 1050 236 247 120 110 chr11 61076490 61076590 -60767266 + MIRc SINE MIR 24 124 -144 1 1050 939 113 271 0 chr11 61078851 61079028 -60764828 + URR1A DNA MER1_type 1 225 -1 1 1051 380 305 78 7 chr11 61079752 61079894 -60763962 + MER5A1 DNA MER1_type 1 152 -14 1 1051 243 0 0 0 chr11 61081016 61081043 -60762813 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1051 198 71 0 0 chr11 61081735 61081763 -60762093 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 1 1051 469 308 148 22 chr11 61082132 61082370 -60761486 + L2b LINE L2 2826 3084 -291 1 1051 756 225 0 21 chr11 61082939 61083084 -60760772 + B1_Mur2 SINE Alu 7 148 -1 1 1051 1389 211 45 11 chr11 61083165 61083434 -60760422 - MTC LTR MaLR -8 413 136 1 1051 291 330 233 22 chr11 61083467 61083737 -60760119 + MLT1K LTR MaLR 202 528 -67 1 1051 21 0 0 0 chr11 61085066 61085087 -60758769 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 691 209 45 0 chr11 61085087 61085221 -60758635 - B1_Mur2 SINE Alu -9 140 1 1 1051 506 254 98 23 chr11 61085550 61085764 -60758092 + L1MCb LINE L1 933 1162 -4883 1 1051 353 250 32 129 chr11 61085766 61085890 -60757966 - B3 SINE B2 -2 214 103 1 1051 454 306 18 0 chr11 61085921 61086032 -60757824 + B3A SINE B2 19 131 -67 1 1051 1245 296 58 39 chr11 61086319 61086344 -60757512 - RMER5 LTR ERV1 -4 530 508 1 1051 2150 171 65 18 chr11 61086344 61086742 -60757114 + MTC LTR MaLR 1 417 -4 1 1051 1245 296 58 39 chr11 61086742 61087236 -60756620 - RMER5 LTR ERV1 -27 507 1 1 1051 375 191 157 0 chr11 61088171 61088260 -60755596 + RSINE1 SINE B4 26 128 -37 1 1051 363 23 0 0 chr11 61088266 61088310 -60755546 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1051 534 283 48 12 chr11 61088904 61089072 -60754784 + MTEa LTR MaLR 6 179 -200 1 1051 566 246 0 24 chr11 61089106 61089231 -60754625 + MTEa LTR MaLR 249 370 -9 1 1051 546 204 55 9 chr11 61089240 61089349 -60754507 - MTD LTR MaLR -12 407 294 1 1051 283 111 0 0 chr11 61089354 61089399 -60754457 + L1_Mm LINE L1 1898 1942 -3941 1 1051 272 281 50 55 chr11 61089399 61089521 -60754335 - MTD LTR MaLR -95 324 196 1 1051 1415 34 0 16 chr11 61089531 61089713 -60754143 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1051 390 91 0 0 chr11 61089714 61089769 -60754087 + (TCC)n Simple_repeat Simple_repeat 3 57 0 1 1051 234 81 0 0 chr11 61089770 61089807 -60754049 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1051 1049 68 0 0 chr11 61089807 61089939 -60753917 - B1_Mm SINE Alu -7 140 9 1 1051 882 197 73 0 chr11 61089941 61090119 -60753737 - MTD LTR MaLR -228 191 1 1 1051 378 0 0 0 chr11 61090142 61090184 -60753672 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1051 225 281 98 0 chr11 61091070 61091152 -60752704 - MTD LTR MaLR -311 108 19 1 1051 429 20 0 0 chr11 61091234 61091284 -60752572 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1051 4560 154 87 17 chr11 61091709 61093199 -60750657 + L1_Mur3 LINE L1 358 1943 -3937 1 1051 1571 185 24 8 chr11 61093192 61093559 -60750297 + Lx7 LINE L1 5639 6038 -1658 1 1051 1384 208 69 99 chr11 61093559 61094102 -60749754 + RMER19B LTR ERVK 1 531 -371 1 1051 2665 216 76 3 chr11 61094103 61094684 -60749172 + Lx7 LINE L1 6208 6830 -866 1 1051 3508 180 18 86 chr11 61094723 61095507 -60748349 + Lx7 LINE L1 6959 7689 -7 1 1051 723 156 9 3 chr11 61095508 61095654 -60748202 - RMER1C Other Other -2 1340 1227 1 1051 4262 137 40 54 chr11 61095656 61096667 -60747189 + RLTR13D1 LTR ERVK 1 1023 0 1 1051 1020 151 106 6 chr11 61096686 61096866 -60746990 - RMER1C Other Other -146 1196 999 1 1051 240 208 0 0 chr11 61097176 61097224 -60746632 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1051 827 140 0 80 chr11 61097403 61097566 -60746290 - B1_Mur4 SINE Alu 0 150 1 1 1051 278 206 16 0 chr11 61098121 61098184 -60745672 + L1MC LINE L1 4183 4246 -1900 1 1051 318 87 0 0 chr11 61098485 61098531 -60745325 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1051 912 134 7 0 chr11 61098663 61098805 -60745051 - B1_Mur4 SINE Alu -7 143 1 1 1051 297 236 100 23 chr11 61098959 61099089 -60744767 + L1MC LINE L1 4233 4372 -1774 1 1051 1645 170 52 0 chr11 61099127 61099415 -60744441 - RMER5 LTR ERV1 -5 529 227 1 1051 949 251 28 70 chr11 61100046 61100333 -60743523 - MTE2a LTR MaLR -102 277 3 1 1051 1276 209 114 39 chr11 61101371 61101679 -60742177 + MTD LTR MaLR 16 346 -73 1 1051 1583 161 136 32 chr11 61101679 61102018 -60741838 - ORR1D1 LTR MaLR 0 374 1 1 1051 849 180 87 11 chr11 61102018 61102203 -60741653 - ORR1D1-int LTR MaLR 0 1370 1172 1 1051 542 245 122 81 chr11 61102270 61102694 -60741162 + RMER2 LTR ERV1 1 554 -13 1 1051 2116 93 23 10 chr11 61103385 61103690 -60740166 + RLTR33 LTR ERVK 1 309 -369 1 1051 6968 218 71 88 chr11 61103759 61104509 -60739347 - RLTR19-int LTR ERVK -1756 4381 3650 1 1051 3034 47 26 13 chr11 61104509 61104900 -60738956 - MTA_Mm LTR MaLR 0 396 1 1 1051 6968 218 71 88 chr11 61104900 61105180 -60738676 - RLTR19-int LTR ERVK -2488 3649 3359 1 1051 1599 42 5 0 chr11 61105180 61105371 -60738485 - B2_Mm1t SINE B2 0 193 2 1 1051 6968 218 71 88 chr11 61105371 61106744 -60737112 - RLTR19-int LTR ERVK -2779 3358 2020 1 1051 666 208 21 80 chr11 61106771 61106959 -60736897 - URR1A DNA MER1_type -43 183 7 1 1051 644 290 75 78 chr11 61107044 61107351 -60736505 - ORR1D1-int LTR MaLR -43 1215 910 1 1051 732 212 43 102 chr11 61107353 61107696 -60736160 - RLTR19-int LTR ERVK -1882 1356 979 1 1051 456 149 22 22 chr11 61107806 61107895 -60735961 - RLTR19-int LTR ERVK -5161 976 888 1 1051 198 0 0 0 chr11 61108871 61108893 -60734963 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1051 2862 134 60 21 chr11 61109364 61109843 -60734013 + RMER1B Other Other 560 1057 -9 1 1051 617 230 203 29 chr11 61109993 61110239 -60733617 - RMER21B LTR ERV1 -278 564 276 1 1051 1588 222 148 0 chr11 61110286 61110637 -60733219 - ORR1D-int LTR MaLR -187 1183 781 1 1051 1504 119 86 4 chr11 61110677 61110921 -60732935 - RLTR17 LTR ERVK -78 614 351 1 1051 1010 135 12 12 chr11 61110918 61111083 -60732773 - RLTR17 LTR ERVK -527 165 1 1 1051 245 167 0 0 chr11 61111156 61111198 -60732658 - ORR1D-int LTR MaLR -763 607 566 1 1051 907 255 40 68 chr11 61111321 61111420 -60732436 + RLTR15 LTR ERVK 1 95 -264 1 1051 591 27 0 0 chr11 61111420 61111493 -60732363 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1051 907 255 40 68 chr11 61111493 61111746 -60732110 + RLTR15 LTR ERVK 96 343 -16 1 1051 390 156 52 0 chr11 61111949 61112026 -60731830 - RLTR11A2 LTR ERVK -15 512 432 1 1051 646 85 65 58 chr11 61112049 61112083 -60731773 - L1_Mus3 LINE L1 -1 6637 6611 1 1051 1117 82 0 13 chr11 61112083 61112232 -60731624 - B1_Mus2 SINE Alu 0 147 1 1 1051 646 85 65 58 chr11 61112232 61112335 -60731521 - L1_Mus3 LINE L1 -28 6610 6499 1 1051 1499 221 44 15 chr11 61112335 61112675 -60731181 - RLTR11A2 LTR ERVK -72 455 106 1 1051 346 311 137 34 chr11 61113006 61113239 -60730617 + L1MB5 LINE L1 5887 6143 -31 1 1051 284 333 58 15 chr11 61113467 61113604 -60730252 + ORR1E LTR MaLR 38 180 -179 1 1051 1471 203 123 20 chr11 61113725 61114123 -60729733 + RMER17B LTR ERVK 1 439 -519 1 1051 1789 206 63 114 chr11 61114135 61114738 -60729118 + RMER13B LTR ERVK 278 849 -59 1 1051 186 43 0 0 chr11 61114992 61115015 -60728841 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1 1051 248 136 0 48 chr11 61115350 61115412 -60728444 + ID4_ SINE ID 16 74 -9 1 1051 24 32 0 0 chr11 61116012 61116043 -60727813 + AT_rich Low_complexity Low_complexity 1 31 0 1 1051 1024 222 10 24 chr11 61116612 61116820 -60727036 - B3 SINE B2 -11 205 1 1 1051 260 245 26 133 chr11 61118083 61118098 -60725758 + MT2B LTR ERVL 155 157 -444 1 1051 584 234 43 14 chr11 61118098 61118237 -60725619 + B1F SINE Alu 1 143 -6 1 1051 2371 100 3 6 chr11 61118246 61118579 -60725277 + IAPLTR1a_Mm LTR ERVK 1 332 -5 1 1051 471 35 0 0 chr11 61118579 61118636 -60725220 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 2 1051 983 222 16 16 chr11 61118703 61118895 -60724961 + B3A SINE B2 1 192 -6 2 1051 300 248 31 35 chr11 61118966 61119063 -60724793 - B3A SINE B2 -24 192 97 2 1051 26 30 0 0 chr11 61120301 61120334 -60723522 + AT_rich Low_complexity Low_complexity 1 33 0 2 1051 469 293 0 0 chr11 61120343 61120566 -60723290 + (TG)n Simple_repeat Simple_repeat 1 223 0 2 1051 337 327 36 60 chr11 61120569 61120735 -60723121 - RSINE1 SINE B4 0 165 4 2 1051 1147 250 79 42 chr11 61121364 61121749 -60722107 + MTD LTR MaLR 12 403 -16 2 1051 701 261 38 0 chr11 61122480 61122637 -60721219 + RSINE1 SINE B4 3 165 0 2 1051 500 195 17 0 chr11 61122637 61122755 -60721101 + (CATATA)n Simple_repeat Simple_repeat 3 122 0 2 1051 340 250 64 55 chr11 61122914 61123024 -60720832 - PB1D10 SINE Alu -3 114 4 2 1051 395 336 0 56 chr11 61123633 61123759 -60720097 + PB1 SINE Alu 2 120 -7 2 1051 709 319 51 38 chr11 61123883 61124196 -60719660 + MLT1A1 LTR MaLR 92 408 0 2 1051 555 278 64 64 chr11 61124494 61124698 -60719158 - B4 SINE B4 -19 273 70 2 1051 291 71 0 0 chr11 61125015 61125057 -60718799 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 1051 258 324 53 13 chr11 61125078 61125153 -60718703 - ID SINE ID -135 89 12 2 1051 930 137 7 58 chr11 61125715 61125870 -60717986 - B1_Mur3 SINE Alu 0 149 3 2 1051 279 54 0 0 chr11 61127641 61127678 -60716178 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 2 1051 510 178 158 0 chr11 61127778 61127879 -60715977 + MTC LTR MaLR 2 118 -303 2 1051 795 207 31 14 chr11 61127874 61128053 -60715803 - B3 SINE B2 -3 190 1 2 1051 333 0 0 0 chr11 61128055 61128092 -60715764 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 2 1051 322 236 0 26 chr11 61128094 61128207 -60715649 - Lx6 LINE L1 -26 7434 7325 2 1051 1702 26 0 0 chr11 61128220 61128413 -60715443 - B2_Mm1a SINE B2 0 193 1 2 1051 1362 234 54 25 chr11 61128470 61129045 -60714811 - Lx6 LINE L1 -156 7304 6455 2 1051 1693 222 69 42 chr11 61129045 61129566 -60714290 + Lx6 LINE L1 5832 6394 -656 2 1051 1991 138 65 12 chr11 61129566 61129912 -60713944 + MTC LTR MaLR 21 421 0 2 1051 374 286 84 36 chr11 61130090 61130340 -60713516 + L1_Mur3 LINE L1 1543 1804 -4079 2 1051 273 29 0 0 chr11 61130350 61130384 -60713472 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1051 225 0 0 0 chr11 61130384 61130408 -60713448 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1051 625 241 94 42 chr11 61130475 61130687 -60713169 + ID_B1 SINE B4 2 224 0 2 1051 829 310 131 30 chr11 61130966 61131758 -60712098 + L1M2 LINE L1 2118 2989 -3154 2 1051 333 0 0 0 chr11 61131783 61131820 -60712036 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1051 396 40 0 0 chr11 61131820 61131869 -60711987 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1051 270 232 0 0 chr11 61131890 61132002 -60711854 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1051 201 139 0 0 chr11 61132079 61132122 -60711734 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1051 653 260 27 7 chr11 61132138 61132285 -60711571 - RSINE1 SINE B4 0 165 16 2 1051 2326 288 48 22 chr11 61132713 61133437 -60710419 + Lx8 LINE L1 6459 7201 -272 2 1051 1554 222 92 32 chr11 61133516 61133949 -60709907 + Lx8 LINE L1 7010 7468 -5 2 1051 818 291 116 12 chr11 61134122 61134372 -60709484 + B4A SINE B4 1 276 -16 2 1051 339 78 0 0 chr11 61134389 61134440 -60709416 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 2 1051 723 243 9 76 chr11 61134872 61135095 -60708761 + MTEa LTR MaLR 170 377 -2 2 1051 634 330 104 12 chr11 61135729 61136437 -60707419 + L1M2 LINE L1 4975 5747 -553 2 1051 980 113 1 1 chr11 61136447 61136597 -60707259 + L1M2 LINE L1 2604 2785 -3358 2 1051 880 135 63 7 chr11 61136649 61136791 -60707065 - B1_Mur4 SINE Alu 0 150 1 2 1051 410 290 157 42 chr11 61136893 61137066 -60706790 + L1M3 LINE L1 4364 4553 -1587 2 1051 2141 121 81 31 chr11 61137066 61137449 -60706407 + MTB_Mm LTR MaLR 2 403 -4 2 1051 410 304 191 58 chr11 61137449 61138152 -60705704 + L1M3 LINE L1 4554 5365 -778 2 1051 258 32 0 0 chr11 61138186 61138217 -60705639 + (CAAT)n Simple_repeat Simple_repeat 1 31 0 2 1051 950 260 50 39 chr11 61138217 61138477 -60705379 + B4A SINE B4 30 292 0 2 1051 214 321 0 0 chr11 61138482 61138538 -60705318 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1051 305 221 7 221 chr11 61138573 61138718 -60705138 + PB1 SINE Alu 14 127 0 2 1051 259 176 73 0 chr11 61138763 61138831 -60705025 + L1MA9 LINE L1 6240 6312 0 2 1051 25 0 0 0 chr11 61139018 61139043 -60704813 + AT_rich Low_complexity Low_complexity 1 25 0 2 1051 218 109 0 61 chr11 61140195 61140244 -60703612 + A-rich Low_complexity Low_complexity 2 47 0 2 1051 226 253 34 148 chr11 61140306 61140394 -60703462 + MLT2B5 LTR ERVL 160 237 -364 2 1051 864 171 264 13 chr11 61140455 61140783 -60703073 + MTD LTR MaLR 6 419 0 2 1051 486 49 0 0 chr11 61140951 61141012 -60702844 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2 1051 261 173 39 0 chr11 61141090 61141142 -60702714 - ID4 SINE ID -22 61 8 2 1051 252 176 116 12 chr11 61141331 61141373 -60702483 - Lx9 LINE L1 -32 7612 7562 2 1051 252 0 0 0 chr11 61141373 61141401 -60702455 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1051 252 176 116 12 chr11 61141401 61141444 -60702412 - Lx9 LINE L1 -83 7561 7518 2 1051 525 172 202 16 chr11 61142540 61142664 -60701192 - B1_Mur2 SINE Alu 0 149 3 2 1051 233 284 61 0 chr11 61143340 61143436 -60700420 - BC1_Mm scRNA scRNA -49 103 2 2 1051 180 184 0 0 chr11 61143577 61143626 -60700230 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 2 1051 444 238 0 0 chr11 61143825 61143951 -60699905 + (TA)n Simple_repeat Simple_repeat 2 127 0 2 1051 186 43 0 0 chr11 61143951 61143974 -60699882 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1051 963 262 57 16 chr11 61144005 61144121 -60699735 - L1MA4 LINE L1 -379 5921 5774 2 1051 554 215 127 40 chr11 61144121 61144271 -60699585 - RSINE1 SINE B4 -2 163 1 2 1051 963 301 173 50 chr11 61144271 61145029 -60698827 - L1MA4 LINE L1 -107 5773 4903 2 1051 189 0 0 0 chr11 61145145 61145166 -60698690 + (TTCTG)n Simple_repeat Simple_repeat 4 24 0 2 1051 279 0 0 0 chr11 61145217 61145248 -60698608 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1051 618 286 202 23 chr11 61146358 61147020 -60696836 + L1MA4A LINE L1 3003 3783 -2360 2 1051 1793 285 135 18 chr11 61147026 61147806 -60696050 + L1MA4A LINE L1 4075 4978 -1165 2 1051 558 0 0 0 chr11 61147806 61147868 -60695988 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 1051 189 0 0 0 chr11 61147868 61147888 -60695968 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1051 1793 285 135 19 chr11 61147888 61148262 -60695594 + L1MA4A LINE L1 4922 5355 -788 2 1051 924 47 0 0 chr11 61148262 61148369 -60695487 + U6 snRNA snRNA 1 107 0 2 1051 326 65 0 0 chr11 61148369 61148415 -60695441 + L1Md_F2 LINE L1 6520 6565 -17 2 1051 1154 294 126 60 chr11 61148415 61148754 -60695102 + L1_Rod LINE L1 5279 5640 -207 2 1051 1260 255 55 63 chr11 61148771 61148812 -60695044 - MTE2b LTR MaLR -1 378 349 2 1051 676 292 12 0 chr11 61148812 61148973 -60694883 + RSINE1 SINE B4 3 165 0 2 1051 1260 255 55 63 chr11 61148973 61149312 -60694544 - MTE2b LTR MaLR -31 348 1 2 1051 491 279 62 18 chr11 61149315 61149589 -60694267 + L1MA4A LINE L1 5729 6012 -288 2 1051 185 0 40 0 chr11 61151595 61151620 -60692236 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1051 660 231 13 26 chr11 61151703 61151854 -60692002 - B1_Mur3 SINE Alu 0 149 1 2 1051 933 145 0 16 chr11 61151998 61152180 -60691676 + CT-rich Low_complexity Low_complexity 1 179 0 2 1051 503 229 8 8 chr11 61152180 61152299 -60691557 - PB1D9 SINE Alu 0 120 2 2 1051 293 314 16 41 chr11 61152356 61152479 -60691377 + PB1 SINE Alu 1 120 -7 2 1051 336 24 0 0 chr11 61152582 61152623 -60691233 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1051 629 289 39 66 chr11 61152668 61152927 -60690929 + B4A SINE B4 41 292 0 2 1051 227 244 0 0 chr11 61152931 61152976 -60690880 - MIR SINE MIR 0 262 218 2 1051 185 300 33 16 chr11 61153277 61153338 -60690518 + MIRb SINE MIR 65 126 -142 2 1051 296 296 57 57 chr11 61153339 61153479 -60690377 + ORR1E LTR MaLR 5 144 -215 2 1051 238 179 0 0 chr11 61153507 61153546 -60690310 + ID SINE ID 16 54 -170 2 1051 300 245 186 26 chr11 61153564 61153677 -60690179 + B1F SINE Alu 3 133 -16 2 1051 286 227 95 74 chr11 61154083 61154178 -60689678 + B4A SINE B4 71 167 -125 2 1051 662 200 53 23 chr11 61154102 61154219 -60689637 + B1_Mus1 SINE Alu 9 122 -26 2 1051 360 0 0 0 chr11 61154219 61154259 -60689597 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1051 662 200 53 23 chr11 61154259 61154274 -60689582 + B1_Mus1 SINE Alu 123 143 -5 2 1051 853 154 14 22 chr11 61154290 61154429 -60689427 - B1_Mus1 SINE Alu -6 142 5 2 1051 210 91 0 0 chr11 61154460 61154493 -60689363 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2 1051 387 0 0 0 chr11 61154593 61154636 -60689220 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1051 365 202 155 0 chr11 61154680 61154764 -60689092 + PB1D10 SINE Alu 21 117 0 2 1051 479 17 17 0 chr11 61155059 61155119 -60688737 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1051 471 18 0 0 chr11 61155264 61155320 -60688536 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1051 541 348 52 35 chr11 61157229 61157458 -60686398 + Tigger5 DNA MER2_type 6 238 -2168 2 1051 261 0 0 0 chr11 61157627 61157656 -60686200 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1051 915 90 0 25 chr11 61158154 61158314 -60685542 + (GAAA)n Simple_repeat Simple_repeat 3 158 0 2 1051 312 326 145 50 chr11 61159865 61160162 -60683694 + HAL1 LINE L1 1227 1551 -956 2 1051 674 226 29 7 chr11 61160305 61160443 -60683413 + ID_B1 SINE B4 83 223 -1 2 1051 203 0 0 36 chr11 61160626 61160654 -60683202 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2 1051 418 149 11 11 chr11 61162538 61162626 -60681230 + CT-rich Low_complexity Low_complexity 1 88 0 2 1051 366 274 44 159 chr11 61163347 61163529 -60680327 - B4A SINE B4 -9 283 123 3 1051 346 246 48 116 chr11 61163492 61163621 -60680235 + MER89 LTR ERV1 348 469 -90 3 1051 192 40 0 0 chr11 61163621 61163646 -60680210 + (G)n Simple_repeat Simple_repeat 1 25 0 3 1051 346 246 48 116 chr11 61163646 61163705 -60680151 + MER89 LTR ERV1 470 523 -36 3 1051 189 0 0 0 chr11 61163946 61163967 -60679889 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1051 500 230 35 0 chr11 61164459 61164572 -60679284 + PB1D10 SINE Alu 1 117 0 3 1051 660 257 29 0 chr11 61164601 61164741 -60679115 + B1_Mur2 SINE Alu 1 144 -5 3 1051 419 272 16 0 chr11 61164765 61164890 -60678966 + L1MA7 LINE L1 6158 6284 -7 3 1051 26 0 0 0 chr11 61164901 61164927 -60678929 + AT_rich Low_complexity Low_complexity 1 26 0 3 1051 314 170 93 31 chr11 61164927 61165024 -60678832 + Charlie5 DNA MER1_type 2425 2527 -97 3 1051 24 0 0 0 chr11 61165158 61165182 -60678674 + AT_rich Low_complexity Low_complexity 1 24 0 3 1051 804 220 75 5 chr11 61166679 61166880 -60676976 + B3 SINE B2 2 216 0 3 1051 255 277 15 0 chr11 61167276 61167341 -60676515 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 3 1051 231 309 0 29 chr11 61167283 61167353 -60676503 + BC1_Mm scRNA scRNA 16 83 -69 3 1051 242 288 182 0 chr11 61168090 61168156 -60675700 - ID2 SINE ID -3 80 3 3 1051 403 263 62 0 chr11 61168479 61168584 -60675272 - B1F SINE Alu -1 116 1 3 1051 288 111 0 0 chr11 61168685 61168730 -60675126 + (TCTG)n Simple_repeat Simple_repeat 1 45 0 3 1051 342 0 0 0 chr11 61169157 61169195 -60674661 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1051 21 0 0 0 chr11 61169471 61169492 -60674364 + AT_rich Low_complexity Low_complexity 1 21 0 3 1051 844 221 83 29 chr11 61169493 61169698 -60674158 - B3 SINE B2 0 216 1 3 1051 235 147 0 0 chr11 61172331 61172365 -60671491 - tRNA-Gly-GGY tRNA tRNA -40 34 1 3 1051 459 228 0 0 chr11 61172455 61172534 -60671322 + RSINE1 SINE B4 43 121 -44 3 1051 468 35 0 0 chr11 61172534 61172592 -60671264 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1051 319 287 44 53 chr11 61173514 61173628 -60670228 + MIR SINE MIR 28 140 -122 3 1051 23 0 0 0 chr11 61174892 61174915 -60668941 + AT_rich Low_complexity Low_complexity 1 23 0 3 1051 331 215 31 0 chr11 61175662 61175727 -60668129 - ID2 SINE ID -16 67 1 3 1051 1381 84 5 5 chr11 61175735 61175927 -60667929 - B2_Mm1a SINE B2 -1 192 1 3 1051 194 91 0 29 chr11 61177097 61177131 -60666725 + (CCCCCT)n Simple_repeat Simple_repeat 2 34 0 3 1051 863 208 6 6 chr11 61177377 61177537 -60666319 + B3 SINE B2 25 184 -32 3 1051 25 31 0 0 chr11 61177654 61177686 -60666170 + AT_rich Low_complexity Low_complexity 1 32 0 3 1051 1577 211 99 5 chr11 61177688 61178060 -60665796 + MTD LTR MaLR 13 419 0 3 1051 284 310 39 20 chr11 61178106 61178208 -60665648 + BC1_Mm scRNA scRNA 6 109 -43 3 1051 263 259 191 18 chr11 61178350 61178460 -60665396 + LTR65 LTR ERV1 132 260 -409 3 1051 300 244 0 47 chr11 61178472 61178558 -60665298 + ID4_ SINE ID 2 83 0 3 1051 192 77 0 0 chr11 61178558 61178584 -60665272 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1051 533 279 0 0 chr11 61178751 61178862 -60664994 - PB1D10 SINE Alu -6 111 1 3 1051 728 213 8 0 chr11 61179211 61179338 -60664518 + RSINE1 SINE B4 38 165 0 3 1051 540 0 0 0 chr11 61179355 61179415 -60664441 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 3 1051 635 271 163 49 chr11 61181421 61181728 -60662128 + ORR1E LTR MaLR 6 347 -12 3 1051 259 308 25 13 chr11 61181866 61181945 -60661911 + ID4 SINE ID 2 81 -2 3 1051 22 35 0 0 chr11 61181945 61181974 -60661882 + AT_rich Low_complexity Low_complexity 1 29 0 3 1051 602 284 85 16 chr11 61182034 61182319 -60661537 + MLT1B LTR MaLR 19 358 -32 3 1051 243 304 109 42 chr11 61183190 61183355 -60660501 + MER5B DNA MER1_type 2 177 -1 3 1051 249 273 103 13 chr11 61183886 61183964 -60659892 - Tigger5 DNA MER2_type -2207 199 115 3 1051 416 256 33 0 chr11 61184015 61184105 -60659751 + MER5A DNA MER1_type 41 133 -56 3 1051 625 250 70 11 chr11 61184245 61184431 -60659425 + Tigger5 DNA MER2_type 10 206 -2200 3 1051 404 298 17 9 chr11 61184452 61184567 -60659289 + Tigger5 DNA MER2_type 2291 2406 0 3 1051 238 268 18 0 chr11 61184600 61184656 -60659200 + MER5A DNA MER1_type 126 182 -7 3 1051 1206 40 0 0 chr11 61184753 61184901 -60658955 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 3 1051 1064 150 0 0 chr11 61184901 61185048 -60658808 - B1_Mur4 SINE Alu -3 147 1 3 1051 476 256 46 15 chr11 61186671 61186802 -60657054 + MLT1D LTR MaLR 356 490 -15 3 1051 709 163 101 29 chr11 61187103 61187242 -60656614 + MTD LTR MaLR 1 149 -270 3 1051 1142 70 7 0 chr11 61187392 61187534 -60656322 + B1_Mus1 SINE Alu 2 144 -4 3 1051 579 29 0 0 chr11 61187535 61187604 -60656252 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1051 232 298 93 60 chr11 61187803 61187953 -60655903 - MER5A DNA MER1_type -28 161 7 3 1051 486 281 15 15 chr11 61189586 61189723 -60654133 + RSINE1 SINE B4 5 141 -24 3 1051 396 0 0 0 chr11 61189723 61189767 -60654089 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1051 216 0 0 0 chr11 61189767 61189790 -60654066 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3 1051 201 147 0 0 chr11 61190121 61190155 -60653701 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 1051 369 307 0 73 chr11 61190346 61190469 -60653387 - PB1D7 SINE Alu -1 119 6 3 1051 648 0 0 0 chr11 61192029 61192101 -60651755 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1051 459 276 115 6 chr11 61192455 61192612 -60651244 - MTEa LTR MaLR -13 366 193 3 1051 218 262 0 90 chr11 61192803 61192870 -60650986 - ID4 SINE ID -14 69 9 3 1051 2247 129 77 3 chr11 61192974 61193324 -60650532 - ORR1C1 LTR MaLR 0 378 3 3 1051 319 310 97 42 chr11 61193729 61193894 -60649962 + RMER12 LTR ERVK 1149 1322 0 3 1051 469 330 51 15 chr11 61194382 61194579 -60649277 - MLT1C LTR MaLR -4 463 260 3 1051 1096 217 9 0 chr11 61194653 61194865 -60648991 - B3 SINE B2 0 216 3 3 1051 367 286 122 40 chr11 61194931 61195153 -60648703 + ORR1E LTR MaLR 115 354 -5 3 1051 535 292 109 13 chr11 61195160 61195389 -60648467 - MLT1C LTR MaLR -204 263 13 3 1051 259 323 93 5 chr11 61195445 61195638 -60648218 + L1MC3 LINE L1 7363 7572 -213 3 1051 277 234 31 0 chr11 61196032 61196096 -60647760 + FLAM_A SINE Alu 4 69 -226 3 1051 2251 107 28 10 chr11 61196048 61196408 -60647448 + ORR1A2 LTR MaLR 6 382 -2 3 1051 307 274 63 0 chr11 61196408 61196470 -60647386 + PB1D7 SINE Alu 53 120 0 3 1051 323 338 85 132 chr11 61196572 61196977 -60646879 + MLT1A1 LTR MaLR 19 392 -16 3 1051 615 281 82 35 chr11 61196989 61197221 -60646635 - MLT1D LTR MaLR -262 243 1 3 1051 775 164 44 7 chr11 61197715 61197850 -60646006 + B1_Mus2 SINE Alu 8 147 0 3 1051 325 325 47 23 chr11 61198137 61198151 -60645705 + ID SINE ID 62 78 -146 3 1051 597 292 8 0 chr11 61198151 61198281 -60645575 + B1_Mur1 SINE Alu 1 131 -18 3 1051 878 41 16 0 chr11 61198335 61198457 -60645399 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 3 1051 406 228 135 8 chr11 61198627 61198743 -60645113 + PB1D10 SINE Alu 1 127 -22 3 1051 1637 121 92 11 chr11 61198778 61199062 -60644794 + RMER4A LTR ERVK 80 386 -80 3 1051 401 291 217 29 chr11 61199948 61200192 -60643664 + B4 SINE B4 1 290 -2 3 1051 1302 107 11 0 chr11 61200278 61200455 -60643401 + B2_Mm1t SINE B2 1 179 -14 3 1051 228 274 16 31 chr11 61200487 61200551 -60643305 + B3 SINE B2 47 109 -107 3 1051 327 53 0 18 chr11 61200540 61200597 -60643259 + B2_Mm2 SINE B2 137 192 -3 3 1051 1210 55 7 0 chr11 61200663 61200809 -60643047 + B1_Mus1 SINE Alu 1 147 -1 3 1051 546 201 135 25 chr11 61201300 61201463 -60642393 - B3A SINE B2 -16 182 2 3 1051 675 191 25 3 chr11 61201522 61201656 -60642200 + B1F SINE Alu 1 134 -15 3 1051 23 0 0 0 chr11 61201754 61201777 -60642079 + AT_rich Low_complexity Low_complexity 1 23 0 3 1051 280 287 114 51 chr11 61202027 61202203 -60641653 - Lx8 LINE L1 -275 7198 7012 3 1051 206 118 0 0 chr11 61202264 61202298 -60641558 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 1051 198 0 0 0 chr11 61202374 61202396 -60641460 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1051 218 224 42 56 chr11 61202480 61202496 -60641360 - PB1D10 SINE Alu 0 117 103 3 1051 198 71 0 0 chr11 61202496 61202524 -60641332 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 1051 218 224 42 56 chr11 61202524 61202578 -60641278 - PB1D10 SINE Alu -15 102 48 3 1051 432 223 200 0 chr11 61202664 61202794 -60641062 - RSINE1 SINE B4 -8 157 2 3 1051 350 320 0 53 chr11 61202811 61202943 -60640913 - PB1 SINE Alu -2 125 1 3 1051 205 336 60 34 chr11 61203124 61203241 -60640615 - MIRm SINE MIR -122 154 35 3 1051 450 0 0 0 chr11 61203289 61203339 -60640517 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1051 1513 184 45 28 chr11 61204582 61204935 -60638921 - RLTR10D LTR ERVK 0 359 1 3 1051 1951 169 21 26 chr11 61204935 61205312 -60638544 - IAP-d-int LTR ERVK 0 6542 6168 3 1051 2422 224 3 12 chr11 61205364 61205947 -60637909 - IAP-d-int LTR ERVK -486 6056 5479 3 131 18631 259 21 10 chr11 61205941 61211060 -60632796 - IAP-d-int LTR ERVK -1366 5176 1 3 1052 1438 198 45 28 chr11 61211060 61211413 -60632443 - RLTR10D LTR ERVK 0 359 1 3 1052 280 264 11 84 chr11 61211604 61211632 -60632224 + B4 SINE B4 66 86 -206 3 1052 347 245 14 106 chr11 61211632 61211757 -60632099 + B1F2 SINE Alu 3 120 0 3 1052 306 0 0 0 chr11 61211970 61212004 -60631852 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 3 1052 594 252 19 43 chr11 61212004 61212166 -60631690 - RSINE1 SINE B4 -7 158 1 3 1052 468 282 35 0 chr11 61212456 61212598 -60631258 + Lx8 LINE L1 6781 6927 -546 3 1052 1630 154 179 6 chr11 61212632 61212945 -60630911 + ORR1B2 LTR MaLR 1 367 0 4 1052 334 287 204 0 chr11 61213345 61213526 -60630330 + Lx8 LINE L1 7001 7218 -255 3 1052 289 333 37 19 chr11 61213529 61213636 -60630220 + RMER15 LTR ERVL 359 467 -108 4 1052 522 0 0 0 chr11 61213734 61213792 -60630064 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1052 381 252 54 54 chr11 61214326 61214456 -60629400 + MER89 LTR ERV1 2 131 -428 4 1052 230 281 90 79 chr11 61215539 61215628 -60628228 + AluG_3 SINE Alu 137 226 -85 4 1052 234 259 0 17 chr11 61216570 61216629 -60627227 + B4 SINE B4 212 269 -23 4 1052 257 119 0 33 chr11 61216653 61216714 -60627142 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 4 1052 522 194 104 7 chr11 61217623 61217758 -60626098 - B1_Mur1 SINE Alu -1 148 1 4 1052 319 312 66 25 chr11 61217780 61217977 -60625879 - L1M5 LINE L1 -3332 2814 2610 4 1052 295 284 22 33 chr11 61218236 61218327 -60625529 + RLTR33 LTR ERVK 541 630 -48 4 1052 1171 211 164 3 chr11 61218838 61219137 -60624719 - ORR1E LTR MaLR -2 357 11 4 1052 345 214 0 14 chr11 61219413 61219484 -60624372 - ID4 SINE ID -13 70 1 4 1052 24 32 0 0 chr11 61219745 61219776 -60624080 + AT_rich Low_complexity Low_complexity 1 31 0 4 1052 496 238 10 0 chr11 61219919 61220020 -60623836 - PB1D10 SINE Alu -7 110 9 4 1052 2630 137 17 5 chr11 61220337 61220749 -60623107 + MTC LTR MaLR 5 421 0 4 1052 640 28 0 0 chr11 61221417 61221489 -60622367 - tRNA-Trp-TGG tRNA tRNA -3 72 1 4 1052 465 184 15 102 chr11 61222734 61222873 -60620983 + B3 SINE B2 65 180 -13 4 1052 262 241 12 12 chr11 61222901 61222985 -60620871 - MER52-int LTR ERV1 -5303 1788 1705 4 1052 317 323 35 35 chr11 61222985 61223155 -60620701 - L1MEg LINE L1 -4032 2052 1883 4 1052 809 196 35 0 chr11 61223172 61223315 -60620541 - B1_Mur2 SINE Alu -1 148 1 4 1052 610 245 26 33 chr11 61223735 61223887 -60619969 + B3 SINE B2 24 174 -42 4 1052 444 77 0 0 chr11 61223936 61224001 -60619855 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1052 603 221 31 34 chr11 61224640 61224791 -60619065 + B3 SINE B2 20 162 -54 4 1052 248 191 86 29 chr11 61225021 61225091 -60618765 - LTR16B1 LTR ERVL -392 88 15 4 1052 207 0 0 0 chr11 61225147 61225170 -60618686 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1052 248 214 18 0 chr11 61225228 61225284 -60618572 - ID SINE ID -166 58 2 4 1052 246 364 73 16 chr11 61225424 61225547 -60618309 + ORR1E LTR MaLR 5 134 -225 4 1052 610 272 9 74 chr11 61225658 61225888 -60617968 + RLTR9A LTR ERVK 154 368 0 4 1052 282 281 73 0 chr11 61226012 61226094 -60617762 + ORR1E LTR MaLR 272 359 0 4 1052 180 0 0 0 chr11 61226181 61226201 -60617655 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1052 818 102 16 33 chr11 61226533 61226655 -60617201 - PB1D9 SINE Alu 0 120 1 4 1052 192 218 35 52 chr11 61226663 61226721 -60617135 + MIRm SINE MIR 110 166 -110 4 1052 665 234 12 49 chr11 61227489 61227651 -60616205 - ID_B1 SINE B4 -33 191 36 4 1052 222 37 0 0 chr11 61227678 61227705 -60616151 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1052 528 127 38 0 chr11 61227705 61227784 -60616072 - B1_Mus2 SINE Alu -9 138 57 4 1052 1704 248 133 22 chr11 61227792 61228386 -60615470 + Lx8 LINE L1 6742 7401 -72 4 1052 2703 235 64 29 chr11 61228604 61229370 -60614486 + RMER19A LTR ERVK 1 807 -95 4 1052 261 0 0 0 chr11 61229370 61229399 -60614457 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1052 702 109 10 0 chr11 61230425 61230526 -60613330 + RMER19A LTR ERVK 636 737 0 4 1052 628 272 7 20 chr11 61231220 61231370 -60612486 + ID_B1 SINE B4 75 222 -2 4 1052 1702 216 44 27 chr11 61231963 61232372 -60611484 + MTD LTR MaLR 4 419 0 4 1052 1007 193 194 66 chr11 61233581 61233870 -60609986 + ORR1C2 LTR MaLR 1 326 -58 4 1052 3235 19 3 5 chr11 61233870 61234238 -60609618 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1052 53208 28 13 5 chr11 61234240 61240713 -60603143 + IAPEz-int LTR ERVK 3 6481 0 4 1052 3235 19 3 5 chr11 61240713 61241081 -60602775 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1052 399 54 89 0 chr11 61241082 61241138 -60602718 + ORR1C2 LTR MaLR 322 382 -2 4 1052 1222 175 242 139 chr11 61241243 61241726 -60602130 - MT2A LTR ERVL 0 533 1 4 1052 871 246 14 39 chr11 61241758 61241780 -60602076 - B3 SINE B2 -4 212 191 4 1052 387 0 0 0 chr11 61241780 61241823 -60602033 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1052 871 246 14 39 chr11 61241823 61242007 -60601849 - B3 SINE B2 -26 190 13 4 1052 416 259 123 71 chr11 61242788 61242942 -60600914 + B4A SINE B4 3 164 -128 4 1052 272 178 82 182 chr11 61242873 61242983 -60600873 + PB1D7 SINE Alu 22 120 0 4 1052 748 167 58 0 chr11 61243001 61243121 -60600735 + B3 SINE B2 4 130 -86 4 1052 270 0 0 0 chr11 61243243 61243273 -60600583 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1052 516 279 161 6 chr11 61244346 61244663 -60599193 - L1MB3 LINE L1 -283 5900 5535 4 1052 845 187 14 11 chr11 61244823 61244988 -60598868 + B3 SINE B2 1 156 -39 4 1052 2447 174 14 60 chr11 61245056 61245454 -60598402 + RLTR16 LTR ERVK 1 402 -103 4 1052 360 0 0 0 chr11 61245454 61245494 -60598362 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1052 2447 174 14 60 chr11 61245494 61245530 -60598326 + RLTR16 LTR ERVK 403 413 -92 4 1052 239 54 27 0 chr11 61245530 61245567 -60598289 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 4 1052 2447 174 14 60 chr11 61245567 61245628 -60598228 + RLTR16 LTR ERVK 414 473 -32 4 1052 1137 84 0 0 chr11 61245912 61246054 -60597802 + B1_Mus1 SINE Alu 1 142 -6 4 1052 189 74 0 0 chr11 61246056 61246083 -60597773 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1052 377 188 0 14 chr11 61246208 61246278 -60597578 + B3 SINE B2 142 210 -6 4 1052 320 297 33 33 chr11 61246462 61246584 -60597272 + L1M3 LINE L1 4194 4315 -1828 4 1052 1009 136 0 20 chr11 61246630 61246780 -60597076 - B1_Mur3 SINE Alu 0 149 3 4 1052 230 0 33 0 chr11 61246814 61246844 -60597012 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 4 1052 747 87 0 0 chr11 61246927 61247031 -60596825 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 4 1052 224 282 89 13 chr11 61247040 61247119 -60596737 + PB1D10 SINE Alu 22 106 -11 4 1052 210 71 0 0 chr11 61247119 61247147 -60596709 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4 1052 524 209 31 34 chr11 61247154 61247268 -60596588 + RSINE1 SINE B4 9 108 -184 4 1052 213 94 0 0 chr11 61247274 61247306 -60596550 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 4 1052 725 262 119 21 chr11 61247437 61247722 -60596134 + L1M3 LINE L1 4756 5068 -1072 4 1052 852 159 46 21 chr11 61247736 61247915 -60595941 - B3 SINE B2 -9 186 3 4 1052 998 280 87 17 chr11 61247937 61248518 -60595338 + L1M3 LINE L1 5113 5740 -449 4 1052 369 0 0 0 chr11 61248910 61248951 -60594905 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1052 285 289 40 24 chr11 61249164 61249288 -60594568 + L1M3e LINE L1 1137 1262 -5765 4 1052 494 292 36 7 chr11 61249341 61249479 -60594377 + RSINE1 SINE B4 2 143 -22 4 1052 411 21 0 0 chr11 61249524 61249572 -60594284 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1052 438 215 15 8 chr11 61250032 61250163 -60593693 + GA-rich Low_complexity Low_complexity 1 132 0 4 1052 1431 268 53 32 chr11 61250166 61250764 -60593092 + Lx7 LINE L1 6976 7696 0 4 1052 1043 134 6 0 chr11 61251081 61251260 -60592596 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1052 456 139 0 0 chr11 61251280 61251359 -60592497 + (TCC)n Simple_repeat Simple_repeat 3 81 0 4 1052 381 275 23 80 chr11 61251517 61251805 -60592051 + L1M3e LINE L1 1814 2073 -4964 4 1052 246 312 99 28 chr11 61252039 61252100 -60591756 + L1M3e LINE L1 2322 2391 -4716 4 1052 180 125 0 0 chr11 61252100 61252132 -60591724 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1052 3180 63 5 2 chr11 61252132 61252528 -60591328 - MTB LTR MaLR 0 400 4 4 1052 513 0 0 0 chr11 61252528 61252585 -60591271 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1052 246 266 82 16 chr11 61252585 61252786 -60591070 + L1M3e LINE L1 2159 2513 -4594 4 1052 495 0 0 0 chr11 61252936 61252991 -60590865 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1052 337 228 0 0 chr11 61252993 61253050 -60590806 - ID4_ SINE ID -16 67 11 4 1052 544 269 70 58 chr11 61253060 61253388 -60590468 + L1M3e LINE L1 3095 3426 -3674 4 1052 214 292 10 73 chr11 61253663 61253759 -60590097 + RSINE1 SINE B4 4 93 -72 4 1052 482 319 61 68 chr11 61253711 61254007 -60589849 + ORR1E LTR MaLR 60 353 -6 4 1052 243 0 0 0 chr11 61254230 61254257 -60589599 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1052 598 205 70 8 chr11 61254993 61255121 -60588735 + B1F SINE Alu 2 137 -12 4 1052 715 290 63 95 chr11 61256839 61257155 -60586701 + MTEa LTR MaLR 1 306 -73 4 1052 332 288 78 21 chr11 61257238 61257380 -60586476 + MER67C LTR ERV1 541 690 -21 4 1052 249 310 108 33 chr11 61258077 61258197 -60585659 + MLT1A1 LTR MaLR 268 396 -12 4 1052 516 86 14 0 chr11 61258312 61258382 -60585474 + B2_Mm1t SINE B2 2 72 -121 4 1052 3253 58 2 15 chr11 61258382 61258787 -60585069 + MTB LTR MaLR 1 400 0 4 1052 6813 96 22 77 chr11 61258787 61259939 -60583917 + MTB-int LTR MaLR 1 1088 -10 4 1052 2738 53 62 0 chr11 61259920 61260277 -60583579 + MTB LTR MaLR 14 392 -8 4 1052 460 177 104 0 chr11 61260269 61260365 -60583491 + B2_Mm1t SINE B2 74 179 -14 4 1052 500 80 310 35 chr11 61260416 61260532 -60583324 + B2_Mm2 SINE B2 47 194 -1 4 1052 252 289 49 49 chr11 61260683 61260785 -60583071 + MIR SINE MIR 42 143 -65 4 1052 23 0 0 0 chr11 61261962 61261985 -60581871 + AT_rich Low_complexity Low_complexity 1 23 0 4 1052 260 375 0 19 chr11 61265427 61265533 -60578323 + C-rich Low_complexity Low_complexity 3 106 0 4 1052 225 0 0 0 chr11 61268057 61268082 -60575774 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1052 672 160 0 0 chr11 61268134 61268253 -60575603 + (CA)n Simple_repeat Simple_repeat 2 120 0 4 1052 369 0 0 0 chr11 61268367 61268408 -60575448 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1052 3221 274 106 67 chr11 61268414 61270003 -60573853 - Lx8 LINE L1 -12 7461 5815 4 1052 298 42 42 0 chr11 61270003 61270051 -60573805 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 1052 821 155 47 0 chr11 61270052 61270181 -60573675 - B1_Mus1 SINE Alu -12 136 2 4 1052 3221 274 106 67 chr11 61270181 61270237 -60573619 - Lx8 LINE L1 -1659 5814 5761 4 1052 270 95 0 0 chr11 61270237 61270279 -60573577 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1052 3221 258 198 13 chr11 61270279 61270382 -60573474 - Lx8 LINE L1 -1296 5762 5631 4 1052 1522 231 16 23 chr11 61270390 61270696 -60573160 - ORR1D2 LTR MaLR 0 370 67 4 1052 295 219 128 88 chr11 61270736 61270861 -60572995 + RMER10A LTR ERVL 311 440 -2 4 1052 436 234 47 93 chr11 61271206 61271309 -60572547 + RLTR23 LTR ERV1 247 340 -90 4 1052 423 0 0 0 chr11 61271309 61271356 -60572500 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1052 436 234 47 93 chr11 61271356 61271445 -60572411 + RLTR23 LTR ERV1 341 430 0 4 1052 378 0 0 0 chr11 61271448 61271490 -60572366 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1052 411 230 83 101 chr11 61271894 61272063 -60571793 - RLTR42-int LTR ERVK -1095 4427 4262 5 1052 2279 143 41 33 chr11 61272068 61272459 -60571397 + ORR1B1 LTR MaLR 1 394 0 5 1052 979 137 14 0 chr11 61272905 61273051 -60570805 + B1_Mur3 SINE Alu 2 149 0 5 1052 506 293 105 84 chr11 61273492 61273872 -60569984 - RMER17C LTR ERVK -15 395 8 5 1052 2549 123 56 0 chr11 61273923 61274296 -60569560 + ORR1B1 LTR MaLR 1 394 0 5 1052 486 313 98 61 chr11 61274457 61274702 -60569154 + B4A SINE B4 15 268 -24 5 1052 768 154 44 0 chr11 61275122 61275258 -60568598 + RMER4B LTR ERVK 17 158 -427 5 1052 22 0 0 0 chr11 61275460 61275482 -60568374 + AT_rich Low_complexity Low_complexity 1 22 0 5 1052 611 334 75 55 chr11 61275509 61275854 -60568002 - MT2A LTR ERVL -113 420 69 5 1052 309 265 117 62 chr11 61275767 61275912 -60567944 - MTE2a LTR MaLR -226 153 1 5 1052 379 242 60 56 chr11 61275921 61276090 -60567766 - RLTR13D3 LTR ERVK 0 1114 983 5 1052 232 234 0 0 chr11 61276810 61276857 -60566999 - RLTR13D3 LTR ERVK -1067 47 1 5 1052 467 33 0 16 chr11 61277006 61277068 -60566788 + (ATG)n Simple_repeat Simple_repeat 3 63 0 5 1052 200 327 155 32 chr11 61277068 61277213 -60566643 - MIRc SINE MIR -13 255 90 5 1052 229 274 129 12 chr11 61277841 61277926 -60565930 + LTR84a LTR ERVL 431 525 -232 5 1052 891 117 20 40 chr11 61278393 61278544 -60565312 - B1_Mur3 SINE Alu 0 149 2 5 1052 238 274 0 0 chr11 61279086 61279137 -60564719 + B1_Mur4 SINE Alu 9 59 -91 5 1052 239 278 48 58 chr11 61279270 61279373 -60564483 + MTEb LTR MaLR 79 180 -179 5 1052 598 279 133 33 chr11 61279629 61279900 -60563956 - MLT1B LTR MaLR -85 305 8 5 1052 408 250 107 0 chr11 61280326 61280438 -60563418 + MTEb LTR MaLR 255 378 -1 5 1052 180 111 0 0 chr11 61280519 61280546 -60563310 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 5 1052 1265 57 102 0 chr11 61280548 61280725 -60563131 - B2_Mm2 SINE B2 0 195 1 5 1052 1583 52 5 0 chr11 61280739 61280931 -60562925 - B2_Mm1t SINE B2 0 193 1 5 1052 398 290 181 0 chr11 61280983 61281138 -60562718 - B3A SINE B2 -15 183 1 5 1052 1716 202 29 99 chr11 61281367 61281851 -60562005 + RMER4A LTR ERVK 17 466 0 5 1052 1147 242 40 52 chr11 61283341 61283441 -60560415 - RLTR20B3 LTR ERVK 0 577 470 5 1052 432 0 0 0 chr11 61283441 61283489 -60560367 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1052 1147 242 40 52 chr11 61283489 61283736 -60560120 - RLTR20B3 LTR ERVK -108 469 234 5 1052 588 308 21 46 chr11 61283854 61284048 -60559808 + B4A SINE B4 104 292 0 5 1052 301 243 26 45 chr11 61284066 61284221 -60559635 + (CACTA)n Simple_repeat Simple_repeat 5 156 0 5 1052 1346 221 87 3 chr11 61284404 61284703 -60559153 + ORR1D2 LTR MaLR 35 358 -12 5 1052 320 258 118 0 chr11 61284782 61284875 -60558981 + L1MDa LINE L1 333 436 -6197 5 1052 673 285 218 42 chr11 61285036 61285472 -60558384 + L1MDa LINE L1 920 1381 -5252 5 1052 498 33 0 0 chr11 61285472 61285532 -60558324 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 5 1052 673 285 218 42 chr11 61285532 61285838 -60558018 + L1MDa LINE L1 1382 1793 -4840 5 1052 358 257 70 21 chr11 61285904 61286047 -60557809 + L1MDa LINE L1 3899 4048 -2489 5 1052 232 323 42 31 chr11 61286141 61286237 -60557619 - Arthur1 DNA Tip100 -1156 2791 2695 5 1052 682 282 111 20 chr11 61286238 61286633 -60557223 + L1MDa LINE L1 4167 4597 -1940 5 1052 652 228 20 46 chr11 61286678 61286830 -60557026 + B1_Mur2 SINE Alu 1 148 -1 5 1052 380 264 123 0 chr11 61286868 61287023 -60556833 + L1MC1 LINE L1 5880 6053 -280 5 1052 540 247 65 30 chr11 61287051 61287251 -60556605 + MT2A LTR ERVL 1 207 -326 5 1052 317 336 44 33 chr11 61287283 61287557 -60556299 - RMER17C LTR ERVK -68 342 66 5 1052 227 221 20 31 chr11 61287600 61287698 -60556158 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 1052 1065 191 26 83 chr11 61287699 61288007 -60555849 - RLTR19-int LTR ERVK -352 2886 2611 5 1052 602 164 0 9 chr11 61288116 61288221 -60555635 + LSU-rRNA_Hsa rRNA rRNA 4202 4305 -730 5 1052 1336 208 90 16 chr11 61288257 61288580 -60555276 - RLTR19-int LTR ERVK -4804 1333 987 5 1052 293 335 33 92 chr11 61289154 61289338 -60554518 + RLTR20B3 LTR ERVK 98 270 -307 5 1052 297 205 20 256 chr11 61289830 61290033 -60553823 - RLTR42-int LTR ERVK -3679 1843 1689 5 1052 411 21 0 0 chr11 61290140 61290188 -60553668 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1052 296 293 65 65 chr11 61290956 61291201 -60552655 - RodERV21-int LTR ERV1 -4276 715 471 5 1052 250 306 71 0 chr11 61291201 61291299 -60552557 - RodERV21-int LTR ERV1 -4784 207 103 5 1052 234 174 0 0 chr11 61291350 61291396 -60552460 + (CCA)n Simple_repeat Simple_repeat 1 46 0 5 1052 612 256 90 50 chr11 61291779 61292079 -60551777 + MT2A LTR ERVL 222 533 0 5 1052 474 279 62 26 chr11 61292083 61292278 -60551578 + L1MC1 LINE L1 6114 6315 -18 5 1052 210 152 0 0 chr11 61292400 61292433 -60551423 - PB1D9 SINE Alu -66 54 22 5 1052 796 108 130 8 chr11 61292455 61292548 -60551308 - B1_Mus1 SINE Alu 0 148 40 5 1052 1476 45 28 0 chr11 61292548 61292725 -60551131 + B2_Mm1a SINE B2 3 184 -9 5 1052 796 108 130 8 chr11 61292725 61292762 -60551094 - B1_Mus1 SINE Alu -109 39 3 5 1052 1429 70 0 21 chr11 61293193 61293382 -60550474 + B2_Mm2 SINE B2 2 186 -9 5 1052 880 212 95 0 chr11 61293979 61294168 -60549688 + B3 SINE B2 4 210 -6 5 1052 1041 148 0 0 chr11 61294194 61294343 -60549513 + B1_Mur2 SINE Alu 1 149 0 5 1052 411 21 0 0 chr11 61294424 61294472 -60549384 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1052 4058 209 59 42 chr11 61294472 61295179 -60548677 - RMER1B Other Other -19 1047 342 5 1052 189 74 0 0 chr11 61295179 61295206 -60548650 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1052 4058 209 59 42 chr11 61295206 61295526 -60548330 - RMER1B Other Other -725 341 2 5 1052 1159 178 4 78 chr11 61295559 61295791 -60548065 - B3 SINE B2 -1 215 1 5 1052 519 17 0 0 chr11 61295938 61295998 -60547858 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1052 189 0 0 0 chr11 61296330 61296351 -60547505 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1052 986 68 8 0 chr11 61296386 61296518 -60547338 - B1_Mus1 SINE Alu -2 146 14 5 1052 567 230 7 45 chr11 61296518 61296538 -60547318 - ID_B1 SINE B4 0 221 76 5 1052 307 319 0 0 chr11 61296821 61296893 -60546963 - MLT1J LTR MaLR -333 179 108 5 1052 311 293 94 126 chr11 61297158 61297349 -60546507 + MER57C2 LTR ERV1 246 430 -4 5 1052 818 115 2 1 chr11 61297351 61297484 -60546372 + B1_Mus2 SINE Alu 2 135 -14 5 1052 236 237 85 0 chr11 61297654 61297713 -60546143 + MIRm SINE MIR 195 258 -18 5 1052 908 55 142 8 chr11 61299989 61300116 -60543740 - B1_Mm SINE Alu -2 145 2 5 1052 308 206 50 88 chr11 61300135 61300215 -60543641 - ID4 SINE ID -6 77 1 5 1052 254 194 16 0 chr11 61303689 61303751 -60540105 + (CTGGGG)n Simple_repeat Simple_repeat 1 63 0 5 1052 851 143 13 70 chr11 61305374 61305532 -60538324 - B1_Mur4 SINE Alu 0 150 2 5 1052 619 280 73 11 chr11 61305561 61305752 -60538104 - B3 SINE B2 -13 203 1 5 1052 234 304 112 61 chr11 61306077 61306175 -60537681 - ID_B1 SINE B4 -1 223 121 5 1052 185 320 137 20 chr11 61306663 61306765 -60537091 - MIRb SINE MIR -21 247 134 5 1052 22 0 0 0 chr11 61307513 61307535 -60536321 + GC_rich Low_complexity Low_complexity 1 22 0 5 1052 21 0 0 0 chr11 61307866 61307887 -60535969 + GC_rich Low_complexity Low_complexity 1 21 0 5 1052 203 95 0 45 chr11 61308291 61308335 -60535521 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 5 1052 227 171 0 0 chr11 61308787 61308822 -60535034 - MurSatRep1 Unknown Unknown -1853 284 250 5 1052 293 331 30 52 chr11 61308822 61308836 -60535020 - B4 SINE B4 -107 185 156 5 1052 473 167 77 0 chr11 61308836 61308914 -60534942 - B1_Mur4 SINE Alu -66 84 1 5 1052 293 331 30 52 chr11 61308914 61308956 -60534900 - B4 SINE B4 -107 155 55 5 1052 659 278 172 73 chr11 61310337 61310435 -60533421 + MTE2b LTR MaLR 33 128 -251 5 1052 1184 58 0 0 chr11 61310435 61310572 -60533284 + B1_Mm SINE Alu 1 137 -10 5 1052 426 20 0 0 chr11 61310572 61310623 -60533233 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1052 659 278 172 73 chr11 61310623 61310837 -60533019 + MTE2b LTR MaLR 129 376 -3 5 1052 2426 126 119 143 chr11 61311083 61311677 -60532179 - RMER4B LTR ERVK 0 585 6 5 1052 664 188 67 0 chr11 61311881 61312018 -60531838 - B1_Mus1 SINE Alu 0 148 2 5 1052 1949 109 47 77 chr11 61312319 61312658 -60531198 + ORR1A4 LTR MaLR 1 329 0 5 1052 455 261 185 27 chr11 61312784 61312930 -60530926 + B3A SINE B2 14 182 -16 5 1052 472 131 0 20 chr11 61312947 61312966 -60530890 + (TG)n Simple_repeat Simple_repeat 2 20 0 5 1052 216 0 0 0 chr11 61312966 61312990 -60530866 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1052 472 131 0 20 chr11 61312990 61313071 -60530785 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 1052 405 0 0 0 chr11 61313780 61313825 -60530031 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1052 838 124 33 0 chr11 61314530 61314651 -60529205 - B3 SINE B2 -86 130 6 5 1052 279 0 0 0 chr11 61314869 61314900 -60528956 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 5 1052 1069 96 0 0 chr11 61314900 61315036 -60528820 - B1_Mus1 SINE Alu -12 136 1 5 1052 485 135 4 13 chr11 61315539 61315628 -60528228 + MTC-int LTR MaLR 730 802 -456 5 1052 3218 137 58 28 chr11 61315630 61316247 -60527609 - MTC-int LTR MaLR -546 712 2 5 1052 1625 152 123 3 chr11 61316246 61316562 -60527294 - MTC LTR MaLR 0 421 68 5 1052 234 0 0 0 chr11 61316618 61316644 -60527212 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 5 1052 1339 50 0 0 chr11 61316644 61316804 -60527052 - B2_Mm1t SINE B2 -33 160 1 5 1052 490 175 0 0 chr11 61316806 61316886 -60526970 - MTC LTR MaLR -341 80 1 5 1052 1186 159 30 5 chr11 61317155 61317357 -60526499 - MTC LTR MaLR -214 207 1 5 1052 351 207 21 75 chr11 61320344 61320355 -60523501 + MT2B2 LTR ERVL 153 158 -426 5 1052 447 229 179 9 chr11 61320355 61320461 -60523395 + B1F1 SINE Alu 1 124 -3 5 1052 386 252 72 80 chr11 61320572 61320694 -60523162 - B3A SINE B2 -1 197 77 5 1052 613 193 38 21 chr11 61320694 61320834 -60523022 + B3 SINE B2 1 134 -61 5 1052 184 242 132 66 chr11 61321993 61322099 -60521757 - MIRc SINE MIR -113 155 43 6 1052 24 32 0 0 chr11 61324310 61324341 -60519515 + AT_rich Low_complexity Low_complexity 1 31 0 6 1052 1378 57 62 0 chr11 61324349 61324525 -60519331 + B2_Mm2 SINE B2 2 188 -7 6 1052 311 252 176 0 chr11 61327833 61327952 -60515904 + MER2 DNA MER2_type 95 234 -111 6 1052 369 117 0 0 chr11 61328998 61329058 -60514798 + (A)n Simple_repeat Simple_repeat 1 60 0 6 1052 721 260 47 38 chr11 61329077 61329289 -60514567 + B3 SINE B2 2 215 -1 6 1052 874 131 13 33 chr11 61329375 61329525 -60514331 + B1_Mm SINE Alu 1 147 0 6 1052 1818 152 168 11 chr11 61329635 61329993 -60513863 - MTC LTR MaLR -7 414 1 6 1052 551 122 52 62 chr11 61330409 61330505 -60513351 + MTC LTR MaLR 319 413 -8 6 1052 282 164 0 0 chr11 61335771 61335826 -60508030 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1052 537 292 83 8 chr11 61336725 61336916 -60506940 + B3A SINE B2 1 201 -15 6 1052 280 277 191 68 chr11 61337346 61337493 -60506363 + RSINE1 SINE B4 1 165 0 6 1052 300 53 0 0 chr11 61337750 61337788 -60506068 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1052 285 266 36 48 chr11 61338371 61338454 -60505402 - B1F SINE Alu 0 149 68 6 1052 806 76 9 19 chr11 61338476 61338598 -60505258 - B1_Mur4 SINE Alu 0 150 33 6 1052 832 137 64 7 chr11 61339030 61339170 -60504686 - B1_Mus1 SINE Alu 0 148 1 6 1052 24 32 0 0 chr11 61339273 61339304 -60504552 + AT_rich Low_complexity Low_complexity 1 31 0 6 1053 756 249 26 10 chr11 61341878 61342073 -60501783 + B3A SINE B2 1 198 0 6 1053 272 173 58 0 chr11 61344697 61344749 -60499107 - B2_Mm2 SINE B2 -94 101 47 6 1053 1245 98 40 6 chr11 61344777 61344951 -60498905 - B2_Mm2 SINE B2 -14 181 2 6 1053 414 0 0 0 chr11 61346895 61346941 -60496915 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1053 942 158 164 0 chr11 61347446 61347629 -60496227 + B3 SINE B2 2 214 -2 6 1053 192 40 0 0 chr11 61350308 61350333 -60493523 + (CG)n Simple_repeat Simple_repeat 1 25 0 6 1053 180 0 0 0 chr11 61350343 61350363 -60493493 + (CCTA)n Simple_repeat Simple_repeat 2 21 0 6 1053 619 246 148 42 chr11 61351280 61351526 -60492330 + B4A SINE B4 15 282 -10 6 1053 559 315 0 0 chr11 61351589 61351735 -60492121 + ID_B1 SINE B4 78 223 -1 6 1053 381 264 48 167 chr11 61351741 61351909 -60491947 + ID_B1 SINE B4 75 222 -2 6 1053 1139 48 0 26 chr11 61352248 61352399 -60491457 - B1_Mm SINE Alu 0 147 1 6 1053 730 168 49 42 chr11 61352403 61352546 -60491310 - B1_Mur2 SINE Alu 0 149 6 6 1053 1000 189 53 14 chr11 61353108 61353317 -60490539 + ID_B1 SINE B4 2 218 -6 6 1053 850 222 41 51 chr11 61353353 61353548 -60490308 + B3 SINE B2 19 211 -5 6 1053 480 169 44 11 chr11 61354141 61354231 -60489625 - ID_B1 SINE B4 -1 223 131 6 1053 195 244 67 0 chr11 61354737 61354782 -60489074 + L4 LINE RTE 1962 2009 -20 6 1053 180 243 149 0 chr11 61356817 61356891 -60486965 + L3 LINE CR1 4342 4426 -63 6 1053 295 254 158 0 chr11 61357649 61357814 -60486042 + AmnSINE1 SINE SINE 8 198 -377 6 1053 180 265 0 39 chr11 61360194 61360245 -60483611 - L3 LINE CR1 -2271 2218 2170 6 1053 266 0 29 0 chr11 61360670 61360704 -60483152 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1053 1153 65 0 0 chr11 61360704 61360843 -60483013 - B1_Mm SINE Alu -8 139 1 6 1053 269 328 0 0 chr11 61360937 61361004 -60482852 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 6 1053 528 15 0 44 chr11 61362231 61362299 -60481557 - MT2_Mm LTR ERVL -428 65 1 6 1053 319 0 0 0 chr11 61362299 61362337 -60481519 - MERVL-int LTR ERVL 0 5485 5448 6 1053 3246 6 0 0 chr11 61362337 61362703 -60481153 - MT2_Mm LTR ERVL -127 366 1 6 1053 239 231 95 95 chr11 61362703 61362759 -60481097 - ORR1A3-int LTR MaLR -1350 613 558 6 1053 403 167 46 35 chr11 61362741 61362828 -60481028 - ORR1A3-int LTR MaLR -1323 640 553 6 1053 1342 19 6 0 chr11 61362828 61362985 -60480871 - MERVL-int LTR ERVL -125 5360 5203 6 1053 274 104 0 0 chr11 61363157 61363205 -60480651 + B3 SINE B2 169 216 0 6 1053 303 119 349 23 chr11 61363221 61363295 -60480561 + B1_Mus2 SINE Alu 32 135 -12 6 1053 288 0 0 0 chr11 61363295 61363327 -60480529 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 1053 303 119 349 23 chr11 61363327 61363338 -60480518 + B1_Mus2 SINE Alu 136 145 -2 6 1053 198 103 0 0 chr11 61363562 61363591 -60480265 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1053 947 205 42 33 chr11 61364349 61364561 -60479295 + B3 SINE B2 1 214 -2 6 1053 581 189 11 0 chr11 61367480 61367575 -60476281 - B1_Mur3 SINE Alu -9 140 45 6 1053 351 287 198 0 chr11 61368444 61368611 -60475245 - MIR SINE MIR -17 245 46 6 1053 672 114 38 0 chr11 61368657 61368762 -60475094 - B1_Mus1 SINE Alu 0 148 40 6 1053 1196 112 59 0 chr11 61368816 61368986 -60474870 + B2_Mm2 SINE B2 2 181 -14 6 1053 375 103 86 2 chr11 61369017 61369121 -60474735 + B2_Mm2 SINE B2 47 195 0 6 1053 1152 22 44 0 chr11 61369668 61369803 -60474053 + B1_Mm SINE Alu 1 141 -6 6 1053 369 43 0 0 chr11 61369805 61369852 -60474004 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 1053 423 329 39 45 chr11 61369999 61370155 -60473701 - RSINE1 SINE B4 0 165 11 6 1053 325 315 54 0 chr11 61370380 61370472 -60473384 - RSINE1 SINE B4 0 165 69 6 1053 371 320 10 10 chr11 61370547 61370651 -60473205 - PB1 SINE Alu -16 111 8 6 1053 598 247 113 0 chr11 61371542 61371728 -60472128 - B3 SINE B2 -6 210 4 6 1053 658 281 63 88 chr11 61371848 61372098 -60471758 - L1MB7 LINE L1 -30 6154 5909 6 1053 219 36 0 0 chr11 61372098 61372126 -60471730 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1053 1182 43 0 0 chr11 61372126 61372264 -60471592 - B1_Mus1 SINE Alu -9 139 2 6 1053 658 281 63 88 chr11 61372264 61372316 -60471540 - L1MB7 LINE L1 -276 5908 5851 6 1053 730 171 57 7 chr11 61372316 61372457 -60471399 + B1F2 SINE Alu 1 148 -1 6 1053 658 282 115 86 chr11 61372457 61372671 -60471185 - L1MB7 LINE L1 -334 5850 5581 6 1053 562 172 152 30 chr11 61372724 61372856 -60471000 - B1_Mur4 SINE Alu -2 148 1 6 1053 1301 40 20 115 chr11 61373431 61373631 -60470225 + B2_Mm2 SINE B2 1 181 -14 6 1053 1409 70 43 0 chr11 61373645 61373832 -60470024 + B2_Mm2 SINE B2 1 195 0 6 1053 251 293 221 49 chr11 61374258 61374380 -60469476 + B1F SINE Alu 6 148 -1 6 1053 560 289 0 88 chr11 61375528 61375699 -60468157 + B3 SINE B2 5 160 -56 6 1053 892 199 0 0 chr11 61375726 61375862 -60467994 + B1_Mur2 SINE Alu 7 142 -7 6 1053 367 272 115 69 chr11 61375862 61375892 -60467964 + MT2B LTR ERVL 194 342 -259 6 1053 451 293 109 9 chr11 61375901 61376111 -60467745 + L1MC LINE L1 5354 5584 -2298 6 1053 552 270 66 20 chr11 61376111 61376262 -60467594 + RSINE1 SINE B4 6 163 -2 6 1053 195 186 0 0 chr11 61376279 61376322 -60467534 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 6 1053 279 267 33 0 chr11 61376325 61376385 -60467471 + B4A SINE B4 219 280 -12 6 1053 564 261 8 0 chr11 61376617 61376736 -60467120 + PB1D9 SINE Alu 1 120 0 6 1053 21 0 0 0 chr11 61378340 61378361 -60465495 + AT_rich Low_complexity Low_complexity 1 21 0 6 1053 401 198 163 16 chr11 61379068 61379191 -60464665 + LTR48 LTR ERV1 25 165 -622 6 1053 598 213 70 8 chr11 61379667 61379795 -60464061 + B1_Mur3 SINE Alu 1 136 -13 6 1053 410 248 94 0 chr11 61380589 61380738 -60463118 + L1MB5 LINE L1 5701 5863 -311 6 1053 255 202 176 84 chr11 61381019 61381138 -60462718 + MT2B2 LTR ERVL 135 264 -320 6 1053 486 143 33 11 chr11 61381080 61381172 -60462684 + B1_Mur3 SINE Alu 55 148 -1 6 1053 258 277 181 0 chr11 61381201 61381295 -60462561 + PB1D7 SINE Alu 1 111 -9 6 1053 198 0 0 0 chr11 61382494 61382516 -60461340 + (G)n Simple_repeat Simple_repeat 1 22 0 6 1053 309 345 55 22 chr11 61382536 61382715 -60461141 - MER102b DNA MER1_type -64 277 93 6 1053 564 283 139 81 chr11 61382715 61383038 -60460818 + MLT1D LTR MaLR 1 342 -163 6 1053 1193 61 0 0 chr11 61384260 61384407 -60459449 + B1_Mus2 SINE Alu 1 147 0 6 1053 415 259 25 51 chr11 61384456 61384574 -60459282 + PB1D10 SINE Alu 2 116 -1 6 1053 819 223 88 5 chr11 61384628 61384822 -60459034 + B3 SINE B2 1 210 -6 6 1053 191 228 33 50 chr11 61385233 61385293 -60458563 + MER5B DNA MER1_type 20 78 -100 6 1053 189 271 149 54 chr11 61385246 61385320 -60458536 - MER5B DNA MER1_type -60 118 38 6 1053 654 286 57 28 chr11 61386063 61386275 -60457581 + B4A SINE B4 2 219 -73 6 1053 200 162 53 26 chr11 61386348 61386424 -60457432 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1053 292 293 13 13 chr11 61387008 61387080 -60456776 + MER5A DNA MER1_type 5 76 -113 6 1053 654 227 25 0 chr11 61387080 61387199 -60456657 + RSINE1 SINE B4 3 124 -41 6 1053 243 0 0 0 chr11 61387199 61387226 -60456630 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1053 709 293 4 22 chr11 61387269 61387477 -60456379 + B3A SINE B2 1 211 -5 6 1053 22 0 0 0 chr11 61387481 61387503 -60456353 + AT_rich Low_complexity Low_complexity 1 22 0 6 1053 618 111 64 18 chr11 61387537 61387647 -60456209 + B1_Mur2 SINE Alu 35 149 0 6 1053 905 95 103 0 chr11 61387652 61387778 -60456078 + B1_Mus1 SINE Alu 1 139 -9 6 1053 427 248 149 0 chr11 61387931 61388052 -60455804 + B1F2 SINE Alu 5 143 -6 6 1053 303 253 57 11 chr11 61388076 61388164 -60455692 + MER5A DNA MER1_type 91 182 -7 6 1053 615 200 34 17 chr11 61389204 61389321 -60454535 + PB1D9 SINE Alu 2 120 0 6 1053 197 108 27 0 chr11 61389321 61389358 -60454498 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 7 1053 863 100 17 0 chr11 61389380 61389500 -60454356 + B2_Mm2 SINE B2 2 123 -72 7 1053 180 111 0 0 chr11 61389500 61389527 -60454329 + (TCC)n Simple_repeat Simple_repeat 1 27 0 7 1053 1523 68 5 0 chr11 61389527 61389717 -60454139 - B2_Mm1t SINE B2 -2 191 1 7 1053 550 215 180 24 chr11 61389762 61389929 -60453927 + B3A SINE B2 2 194 -4 7 1053 22 35 0 0 chr11 61389931 61389960 -60453896 + AT_rich Low_complexity Low_complexity 1 29 0 7 1053 212 339 0 0 chr11 61390001 61390066 -60453790 + B1_Mur2 SINE Alu 74 138 -11 7 1053 381 219 27 14 chr11 61390106 61390180 -60453676 + ID4_ SINE ID 2 76 -7 7 1053 392 289 20 10 chr11 61390548 61390646 -60453210 + PB1D10 SINE Alu 2 100 -17 7 1053 581 251 34 6 chr11 61391058 61391234 -60452622 + B3A SINE B2 2 182 -16 7 1053 482 219 8 25 chr11 61391499 61391621 -60452235 + PB1D9 SINE Alu 1 120 0 7 1053 203 265 62 71 chr11 61392113 61392220 -60451636 + MIR SINE MIR 60 168 -100 7 1053 21 71 0 0 chr11 61393187 61393229 -60450627 + GC_rich Low_complexity Low_complexity 1 42 0 7 1053 295 253 81 0 chr11 61393606 61393693 -60450163 + L1ME3A LINE L1 6074 6167 -6 7 1053 1977 94 26 91 chr11 61394050 61394341 -60449515 + ORR1A4 LTR MaLR 5 275 -54 7 1053 1393 100 16 0 chr11 61394341 61394531 -60449325 + B2_Mm2 SINE B2 3 195 0 7 1053 1977 94 26 91 chr11 61394531 61394578 -60449278 + ORR1A4 LTR MaLR 276 321 -8 7 1053 412 256 127 13 chr11 61395411 61395536 -60448320 - LTR48 LTR ERV1 -626 161 23 7 1053 1243 94 6 0 chr11 61395898 61396069 -60447787 + B2_Mm1a SINE B2 2 173 -20 7 1053 1008 48 0 0 chr11 61396078 61396202 -60447654 + B1_Mm SINE Alu 24 147 0 7 1053 23 33 0 0 chr11 61396202 61396232 -60447624 + AT_rich Low_complexity Low_complexity 1 30 0 7 1053 990 91 89 134 chr11 61396395 61396555 -60447301 - B2_Mm2 SINE B2 -2 193 33 7 1053 1273 34 0 0 chr11 61396555 61396702 -60447154 - B1_Mm SINE Alu 0 147 1 7 1053 990 91 89 134 chr11 61396702 61396743 -60447113 - B2_Mm2 SINE B2 -163 32 1 7 1053 664 187 0 47 chr11 61396835 61396964 -60446892 + B1_Mus2 SINE Alu 25 147 0 7 1053 22 0 0 0 chr11 61396964 61396986 -60446870 + AT_rich Low_complexity Low_complexity 1 22 0 7 1053 560 291 54 4 chr11 61397096 61397267 -60446589 + B3A SINE B2 1 187 -8 7 1053 546 222 156 16 chr11 61397340 61397468 -60446388 - B1_Mur2 SINE Alu -2 147 2 7 1053 332 111 0 36 chr11 61397654 61397710 -60446146 - B1_Mur1 SINE Alu -3 146 93 7 1053 477 264 183 44 chr11 61397712 61398056 -60445800 + RMER10A LTR ERVL 1 392 -50 7 1053 590 119 0 21 chr11 61398051 61398145 -60445711 - B1_Mus1 SINE Alu -55 93 2 7 1053 327 296 35 120 chr11 61398145 61398173 -60445683 - MT2B LTR ERVL -444 157 54 7 1053 425 209 54 75 chr11 61398173 61398266 -60445590 - B1_Mm SINE Alu -54 93 3 7 1053 211 295 16 32 chr11 61398428 61398491 -60445365 - ID4 SINE ID -17 66 5 7 1053 625 168 39 39 chr11 61398554 61398684 -60445172 - B1_Mus2 SINE Alu -17 130 1 7 1053 537 64 0 0 chr11 61398878 61398956 -60444900 + (GTTTG)n Simple_repeat Simple_repeat 2 79 0 7 1053 721 133 57 16 chr11 61398956 61399078 -60444778 - B1_Mus1 SINE Alu -11 137 11 7 1053 1071 220 14 0 chr11 61399434 61399643 -60444213 - B3 SINE B2 -3 213 2 7 1053 920 228 60 16 chr11 61399694 61399877 -60443979 + B3 SINE B2 1 191 -25 7 1053 1310 101 11 0 chr11 61399879 61400067 -60443789 - B2_Mm1t SINE B2 -3 190 1 7 1053 26 0 0 0 chr11 61400116 61400142 -60443714 + AT_rich Low_complexity Low_complexity 1 26 0 7 1053 343 248 114 0 chr11 61400145 61400250 -60443606 + PB1D10 SINE Alu 1 117 0 7 1053 915 144 7 7 chr11 61400288 61400428 -60443428 - B1_Mus2 SINE Alu -6 141 2 7 1053 471 252 16 24 chr11 61400481 61400607 -60443249 - RSINE1 SINE B4 -38 127 3 7 1053 584 221 52 2 chr11 61401032 61401163 -60442693 - B1F SINE Alu -3 145 9 7 1053 259 254 39 61 chr11 61401209 61401300 -60442556 + ID2 SINE ID 2 89 -63 7 1053 754 234 19 68 chr11 61401300 61401506 -60442350 + B3A SINE B2 2 197 -1 7 1053 210 141 97 161 chr11 61401554 61401647 -60442209 + B1_Mm SINE Alu 5 91 -56 7 1053 288 0 0 0 chr11 61402464 61402496 -60441360 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1053 1299 27 0 0 chr11 61403278 61403425 -60440431 + B1_Mm SINE Alu 1 147 0 7 1053 713 114 87 9 chr11 61403463 61403578 -60440278 + B1_Mur2 SINE Alu 26 149 0 7 1053 204 261 29 44 chr11 61404846 61404914 -60438942 + MIRm SINE MIR 70 136 -140 7 1053 466 211 22 96 chr11 61405131 61405267 -60438589 + MT2B LTR ERVL 139 264 -337 7 1053 1073 60 0 0 chr11 61405168 61405302 -60438554 + B1_Mus1 SINE Alu 15 148 0 7 1053 297 0 0 0 chr11 61405302 61405335 -60438521 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1053 534 184 9 37 chr11 61405424 61405531 -60438325 + ID_B1 SINE B4 121 224 0 7 1053 590 197 137 0 chr11 61406623 61406740 -60437116 - RMER15 LTR ERVL -3 572 440 7 1053 2514 148 10 0 chr11 61406740 61407126 -60436730 - RMER15 LTR ERVL 0 575 186 7 1053 2858 44 7 146 chr11 61407126 61407577 -60436279 + RLTR10 LTR ERVK 1 388 -2 7 1053 15544 28 30 1 chr11 61407589 61409478 -60434378 + RLTR10-int LTR ERVK 41 1984 -3 7 1053 2858 44 7 146 chr11 61409480 61409931 -60433925 + RLTR10 LTR ERVK 1 388 -2 7 1053 352 171 0 24 chr11 61409933 61410017 -60433839 + CT-rich Low_complexity Low_complexity 2 83 0 7 1053 993 188 59 0 chr11 61410044 61410246 -60433610 - RMER15 LTR ERVL -361 214 1 7 1053 349 208 26 0 chr11 61410321 61410398 -60433458 + B3A SINE B2 65 143 -55 7 1053 810 128 0 33 chr11 61410394 61410515 -60433341 - B3 SINE B2 -99 117 1 7 1053 796 246 85 0 chr11 61410549 61410748 -60433108 - B3 SINE B2 0 216 1 7 1053 237 250 62 15 chr11 61410962 61410987 -60432869 - AmnSINE1 SINE SINE -459 116 49 7 1053 248 200 0 0 chr11 61410987 61411027 -60432829 - 5S rRNA rRNA -30 91 52 7 1053 690 249 101 106 chr11 61411604 61412009 -60431847 - RMER10A LTR ERVL -28 414 12 7 1053 200 396 0 30 chr11 61412045 61412144 -60431712 - MIR SINE MIR -71 137 42 7 1053 379 252 16 63 chr11 61412530 61412657 -60431199 + MLT1A1 LTR MaLR 275 395 -13 7 1053 189 0 0 0 chr11 61413207 61413228 -60430628 + (TCTG)n Simple_repeat Simple_repeat 1 21 0 7 1053 1144 88 7 0 chr11 61413533 61413680 -60430176 + B1_Mus1 SINE Alu 1 148 0 7 1053 26 0 0 0 chr11 61413680 61413706 -60430150 + AT_rich Low_complexity Low_complexity 1 26 0 7 1053 1033 75 0 8 chr11 61414535 61414669 -60429187 + B1_Mus2 SINE Alu 1 133 -14 7 1053 1056 16 0 0 chr11 61415537 61415659 -60428197 + (TTC)n Simple_repeat Simple_repeat 3 124 0 7 1053 1235 71 6 12 chr11 61415661 61415833 -60428023 - B2_Mm1a SINE B2 -22 171 1 7 1053 234 0 0 0 chr11 61415918 61415944 -60427912 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 7 1053 210 71 0 0 chr11 61416037 61416065 -60427791 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1053 1209 54 7 0 chr11 61416065 61416212 -60427644 - B1_Mus1 SINE Alu 0 148 1 7 1053 373 243 14 0 chr11 61416878 61416948 -60426908 - B1_Mur3 SINE Alu -78 71 1 7 1053 805 221 37 42 chr11 61416950 61417167 -60426689 - B3 SINE B2 0 216 1 7 1053 230 362 0 0 chr11 61417258 61417338 -60426518 - ID4_ SINE ID -2 81 2 7 1053 573 231 0 0 chr11 61417447 61417555 -60426301 - B3 SINE B2 -95 121 14 7 1053 492 137 33 13 chr11 61417637 61417744 -60426112 + B1_Mm SINE Alu 46 150 0 7 1053 1134 76 0 27 chr11 61417747 61417883 -60425973 + B1_Mus2 SINE Alu 2 137 -10 7 1053 225 0 0 0 chr11 61417883 61417908 -60425948 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1053 1134 76 0 27 chr11 61417908 61417919 -60425937 + B1_Mus2 SINE Alu 138 145 -2 7 1053 378 0 0 0 chr11 61417995 61418037 -60425819 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1053 257 333 46 7 chr11 61418039 61418190 -60425666 - RSINE1 SINE B4 -7 158 2 7 1053 318 312 73 0 chr11 61418227 61418336 -60425520 - B4 SINE B4 -93 199 83 7 1053 271 193 313 0 chr11 61418376 61418459 -60425397 + B1F SINE Alu 1 109 -40 7 1053 281 208 525 16 chr11 61418906 61419028 -60424828 - ORR1D1 LTR MaLR 0 374 184 7 1053 6832 170 27 43 chr11 61419038 61419085 -60424771 - ORR1D1-int LTR MaLR -98 1272 1231 7 1053 405 0 0 0 chr11 61419085 61419130 -60424726 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1053 1145 61 0 57 chr11 61419132 61419289 -60424567 - B1_Mus1 SINE Alu 0 148 1 7 1053 6832 170 27 43 chr11 61419289 61419604 -60424252 - ORR1D1-int LTR MaLR -140 1230 903 7 1053 4751 101 43 24 chr11 61419604 61420346 -60423510 + RMER6A LTR ERVK 1 756 0 7 1053 6832 170 27 43 chr11 61420346 61421271 -60422585 - ORR1D1-int LTR MaLR -468 902 1 7 1053 665 238 161 60 chr11 61421271 61421552 -60422304 - ORR1D1 LTR MaLR -8 366 13 7 1053 328 182 136 0 chr11 61421885 61421951 -60421905 - ORR1D1 LTR MaLR -262 112 38 7 1053 231 245 0 0 chr11 61421978 61422027 -60421829 + A-rich Low_complexity Low_complexity 1 49 0 7 1053 465 308 15 0 chr11 61422085 61422215 -60421641 + B1F SINE Alu 18 149 0 7 1053 613 106 0 19 chr11 61422215 61422321 -60421535 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 7 1053 310 245 45 153 chr11 61422340 61422545 -60421311 - MLT1H LTR MaLR -11 643 414 7 1053 2773 146 155 18 chr11 61422915 61423419 -60420437 - RMER15 LTR ERVL -1 574 2 7 1053 351 239 72 98 chr11 61424211 61424241 -60419615 + B4A SINE B4 71 96 -196 7 1053 757 196 50 7 chr11 61424241 61424380 -60419476 + B1_Mus1 SINE Alu 3 147 -1 7 1053 234 91 0 0 chr11 61425146 61425179 -60418677 + (ATG)n Simple_repeat Simple_repeat 2 34 0 7 1053 1203 75 0 0 chr11 61425331 61425478 -60418378 - B1_Mus2 SINE Alu 0 147 1 7 1053 469 200 122 31 chr11 61425521 61425619 -60418237 - B3A SINE B2 -87 111 5 8 1053 926 229 5 10 chr11 61427051 61427245 -60416611 + Lx7 LINE L1 6569 6761 -935 8 1053 2023 140 29 10 chr11 61427245 61427564 -60416292 - MTC LTR MaLR 0 421 87 8 1053 180 0 0 0 chr11 61427564 61427584 -60416272 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1053 1951 164 53 22 chr11 61427584 61427619 -60416237 - MTC LTR MaLR -321 86 42 8 1053 912 35 86 0 chr11 61427619 61427700 -60416156 - B1_Mus1 SINE Alu 0 148 23 8 1053 514 127 25 0 chr11 61427701 61427780 -60416076 - MTC LTR MaLR -327 94 14 8 1053 1394 208 28 16 chr11 61427784 61428106 -60415750 + Lx7 LINE L1 6756 7081 -615 8 1053 601 276 33 0 chr11 61428660 61428812 -60415044 + RSINE1 SINE B4 8 164 -1 8 1053 201 39 0 0 chr11 61429849 61429875 -60413981 + (C)n Simple_repeat Simple_repeat 1 26 0 8 1053 399 161 149 11 chr11 61430143 61430237 -60413619 - PB1D10 SINE Alu -2 115 9 8 1053 263 236 59 19 chr11 61430163 61430258 -60413598 - B4A SINE B4 -48 176 70 8 1053 264 298 9 55 chr11 61430383 61430493 -60413363 + PB1D10 SINE Alu 1 105 -12 8 1053 260 289 29 78 chr11 61430922 61431100 -60412756 - LTR16C LTR ERVL -11 478 294 8 1053 273 271 87 106 chr11 61431224 61431385 -60412471 + MER53 DNA hAT 22 179 -14 8 1053 363 290 76 8 chr11 61431564 61431696 -60412160 - ID_B1 SINE B4 0 224 84 8 1053 211 245 61 0 chr11 61431780 61431800 -60412056 - AmnSINE1 SINE SINE -443 132 110 8 1053 661 279 109 45 chr11 61431800 61432130 -60411726 + ORR1E LTR MaLR 4 354 -5 8 1053 369 0 0 0 chr11 61432157 61432198 -60411658 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1053 259 311 0 0 chr11 61432510 61432571 -60411285 - PB1D7 SINE Alu -40 80 20 8 1053 513 0 0 0 chr11 61432689 61432746 -60411110 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 8 1053 546 248 51 7 chr11 61432746 61432878 -60410978 - B1_Mur1 SINE Alu -10 139 1 8 1053 492 62 0 0 chr11 61432902 61432966 -60410890 + (GGA)n Simple_repeat Simple_repeat 3 66 0 8 1053 360 0 0 0 chr11 61434456 61434496 -60409360 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1053 363 310 35 0 chr11 61434544 61434647 -60409209 + PB1D9 SINE Alu 1 107 -13 8 1053 249 33 0 0 chr11 61434647 61434677 -60409179 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 8 1053 235 170 19 19 chr11 61434854 61434908 -60408948 - RSINE1 SINE B4 -1 164 111 8 1053 1348 193 134 0 chr11 61434961 61435236 -60408620 - MTD LTR MaLR 0 419 108 8 1053 658 189 63 70 chr11 61435239 61435381 -60408475 + ID_B1 SINE B4 84 224 0 8 1053 1217 54 0 0 chr11 61435383 61435530 -60408326 + B1_Mus2 SINE Alu 1 147 0 8 1053 561 179 59 17 chr11 61435555 61435674 -60408182 - MTD LTR MaLR -295 124 1 8 1053 805 212 151 0 chr11 61435748 61435927 -60407929 + B3 SINE B2 1 206 -10 8 1053 790 244 39 0 chr11 61436045 61436225 -60407631 + B3A SINE B2 1 187 -11 8 1053 684 332 34 19 chr11 61436253 61436459 -60407397 + B4A SINE B4 83 291 -1 8 1053 1843 229 42 115 chr11 61436487 61436614 -60407242 - RLTR18B LTR ERVK 0 512 389 8 1053 1579 197 99 61 chr11 61436614 61437058 -60406798 - RMER6B LTR ERVK 0 461 1 8 1053 1843 229 42 115 chr11 61437058 61437477 -60406379 - RLTR18B LTR ERVK -124 388 6 8 1053 484 229 113 14 chr11 61438061 61438203 -60405653 + RMER15 LTR ERVL 405 560 -15 8 1053 1199 270 15 55 chr11 61438537 61438941 -60404915 - L1MC1 LINE L1 -358 5975 5588 8 1053 505 297 119 76 chr11 61438943 61439297 -60404559 - MLT1A LTR MaLR 0 374 6 8 1053 1513 63 5 0 chr11 61439469 61439660 -60404196 - B2_Mm1t SINE B2 -1 192 1 8 1053 658 231 27 20 chr11 61439932 61440078 -60403778 - B1_Mur1 SINE Alu -2 147 1 8 1053 300 209 129 99 chr11 61440084 61440110 -60403746 - B2_Mm2 SINE B2 -8 187 166 8 1053 462 36 0 0 chr11 61440110 61440166 -60403690 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1053 417 184 88 11 chr11 61440166 61440247 -60403609 - B3A SINE B2 -30 165 79 8 1053 993 202 254 51 chr11 61440477 61440748 -60403108 - MTC LTR MaLR 0 421 83 8 1053 1281 126 11 0 chr11 61440748 61440938 -60402918 - B2_Mm2 SINE B2 -3 192 1 8 1053 993 202 254 51 chr11 61440938 61441016 -60402840 - MTC LTR MaLR -339 82 1 8 1053 475 239 18 18 chr11 61441325 61441436 -60402420 - PB1D10 SINE Alu -6 111 1 8 1053 1360 254 69 6 chr11 61441631 61441979 -60401877 + ORR1D2 LTR MaLR 1 370 0 8 1053 836 188 22 18 chr11 61441979 61442170 -60401686 + B3 SINE B2 3 195 0 8 1053 287 268 71 10 chr11 61442512 61442610 -60401246 + B4 SINE B4 87 190 -102 8 1053 1307 76 47 26 chr11 61443046 61443236 -60400620 + B2_Mm2 SINE B2 1 194 -1 8 1053 1755 212 123 94 chr11 61443466 61444060 -60399796 + RMER19C LTR ERVK 1 611 0 8 1053 787 128 8 0 chr11 61444230 61444355 -60399501 + B1_Mur3 SINE Alu 3 128 -21 8 1053 238 272 103 120 chr11 61444365 61444482 -60399374 + PB1D9 SINE Alu 1 115 -5 8 1053 868 199 0 7 chr11 61444490 61444637 -60399219 + B1_Mur3 SINE Alu 2 147 -2 8 1053 430 323 28 94 chr11 61444741 61444922 -60398934 - RMER15 LTR ERVL -36 539 371 8 1053 361 312 30 53 chr11 61444927 61445059 -60398797 - Lx8 LINE L1 -254 7219 7091 8 1053 3510 217 62 93 chr11 61445069 61445762 -60398094 - ORR1D-int LTR MaLR -291 1079 351 8 1053 1236 55 0 0 chr11 61445762 61445908 -60397948 + B1_Mus1 SINE Alu 3 148 0 8 1053 3510 217 62 93 chr11 61445908 61446163 -60397693 - ORR1D-int LTR MaLR -1020 350 163 8 1053 2042 61 42 0 chr11 61446163 61446424 -60397432 - L1Md_F2 LINE L1 -1 6581 6310 8 1053 3510 217 62 93 chr11 61446424 61446495 -60397361 - ORR1D-int LTR MaLR -1208 162 91 8 1053 252 0 0 0 chr11 61446508 61446536 -60397320 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 8 1053 648 113 103 17 chr11 61446551 61446668 -60397188 - B2_Mm2 SINE B2 -66 129 3 8 1053 675 266 39 13 chr11 61446739 61446968 -60396888 + RMER15-int LTR ERVL 216 450 -4549 8 1053 3549 130 70 42 chr11 61446975 61447689 -60396167 - RMER6A LTR ERVK 0 756 23 8 1053 7374 256 48 29 chr11 61447697 61449751 -60394105 + RMER15-int LTR ERVL 459 2551 -2448 8 1053 1373 292 46 15 chr11 61449753 61450229 -60393627 + RMER15-int LTR ERVL 4154 4644 -355 8 1053 234 276 33 33 chr11 61450783 61450873 -60392983 + RMER15 LTR ERVL 410 499 -76 8 1053 865 160 8 0 chr11 61451180 61451311 -60392545 - B1_Mus1 SINE Alu -16 132 1 8 1053 285 315 17 35 chr11 61451610 61451725 -60392131 + MER76 LTR ERVL 271 383 -308 8 1053 691 309 16 115 chr11 61451763 61452067 -60391789 + MTE2a LTR MaLR 19 292 -87 8 1053 712 199 44 7 chr11 61452087 61452224 -60391632 - B1_Mus1 SINE Alu -6 142 1 8 1053 305 215 0 15 chr11 61452224 61452290 -60391566 + MTE2a LTR MaLR 285 349 -30 8 1053 485 265 190 13 chr11 61452365 61452591 -60391265 + MER76 LTR ERVL 426 691 0 8 1053 430 164 0 0 chr11 61452600 61452673 -60391183 - ORR1D1 LTR MaLR -301 73 1 8 1053 482 261 36 29 chr11 61452857 61452995 -60390861 - RSINE1 SINE B4 -9 156 18 8 1053 230 368 23 0 chr11 61453222 61453309 -60390547 - RSINE1 SINE B4 -2 163 75 8 1053 339 90 14 29 chr11 61453530 61453587 -60390269 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 8 1053 1259 48 0 0 chr11 61453587 61453734 -60390122 - B1_Mm SINE Alu 0 147 1 8 1053 339 90 14 29 chr11 61453734 61453745 -60390111 + (TTTC)n Simple_repeat Simple_repeat 3 13 0 8 1053 781 207 148 49 chr11 61453745 61453948 -60389908 - ID_B1 SINE B4 0 224 2 8 1053 249 33 0 0 chr11 61453988 61454018 -60389838 + (TTA)n Simple_repeat Simple_repeat 3 32 0 8 1053 817 169 0 22 chr11 61454033 61454172 -60389684 - B1_Mm SINE Alu -1 146 11 8 1053 382 316 57 71 chr11 61454038 61454249 -60389607 - B4 SINE B4 -69 223 16 8 1053 4329 40 2 21 chr11 61454255 61454768 -60389088 - RLTR1C LTR ERV1 0 503 1 8 1053 416 180 4 2 chr11 61454904 61454996 -60388860 - PB1D9 SINE Alu -52 97 5 8 1053 317 243 0 41 chr11 61454935 61455008 -60388848 - B4A SINE B4 -142 150 81 8 1053 361 189 10 10 chr11 61455017 61455113 -60388743 + CT-rich Low_complexity Low_complexity 2 97 0 8 1053 186 352 54 21 chr11 61455718 61455811 -60388045 - L3b LINE CR1 -86 396 301 8 1053 509 239 48 72 chr11 61456149 61456316 -60387540 - RSINE1 SINE B4 0 165 3 8 1053 354 98 0 0 chr11 61456322 61456373 -60387483 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1053 243 333 13 0 chr11 61456432 61456510 -60387346 - B4A SINE B4 -1 291 213 8 1053 571 274 51 37 chr11 61456519 61456735 -60387121 - MTEb LTR MaLR -5 374 156 8 1053 307 284 29 0 chr11 61457179 61457281 -60386575 - MTEb LTR MaLR -271 108 4 8 1053 690 268 26 5 chr11 61457283 61457474 -60386382 - B4A SINE B4 -96 196 2 8 1053 217 220 0 48 chr11 61457499 61457561 -60386295 - L2a LINE L2 -36 3390 3332 8 1053 456 332 132 57 chr11 61457701 61458071 -60385785 - MER47B DNA MER2_type -20 398 1 8 1053 648 327 204 52 chr11 61458170 61459545 -60384311 + L1M4b LINE L1 955 2570 -4764 8 1053 1531 154 165 45 chr11 61459545 61459879 -60383977 + ORR1D1 LTR MaLR 1 374 0 8 1053 648 327 204 52 chr11 61459879 61460033 -60383823 + L1M4b LINE L1 2571 2716 -4618 8 1053 503 189 57 0 chr11 61460195 61460301 -60383555 + B1_Mur2 SINE Alu 38 149 0 8 1053 346 239 146 11 chr11 61460311 61460400 -60383456 + RSINE1 SINE B4 2 102 -63 8 1053 359 133 0 39 chr11 61460411 61460489 -60383367 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1053 541 254 85 21 chr11 61460913 61461054 -60382802 - ID_B1 SINE B4 -5 219 70 8 1053 315 172 98 88 chr11 61461045 61461147 -60382709 - PB1D7 SINE Alu 0 120 18 8 1053 483 262 31 39 chr11 61462866 61463045 -60380811 + L1M4b LINE L1 5698 5903 -1097 8 1053 1087 78 14 0 chr11 61463084 61463225 -60380631 + B1_Mus1 SINE Alu 5 147 -1 8 1053 229 220 53 35 chr11 61463399 61463512 -60380344 + L1M4b LINE L1 6128 6242 -915 8 1053 284 222 0 0 chr11 61463524 61463578 -60380278 + B1_Mus2 SINE Alu 43 96 -51 8 1053 216 184 0 0 chr11 61463578 61463627 -60380229 + GA-rich Low_complexity Low_complexity 4 52 0 8 1053 316 153 3 31 chr11 61463627 61463699 -60380157 + B1_Mur4 SINE Alu 40 144 -6 8 1053 1187 308 36 47 chr11 61463704 61463733 -60380123 + Lx7 LINE L1 5296 5324 -523 8 1053 887 169 0 26 chr11 61463733 61463885 -60379971 + B1_Mur3 SINE Alu 1 148 -1 8 1053 1187 305 57 51 chr11 61463885 61464626 -60379230 + Lx7 LINE L1 5325 6099 -1597 8 1053 546 167 85 57 chr11 61464744 61464882 -60378974 + B1_Mur4 SINE Alu 2 144 -6 8 1053 234 0 0 0 chr11 61464882 61464908 -60378948 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1053 294 29 0 0 chr11 61464908 61464942 -60378914 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1053 1232 55 0 7 chr11 61465050 61465198 -60378658 - B1_Mus1 SINE Alu 0 148 2 9 1053 800 214 82 22 chr11 61465202 61465384 -60378472 - B3 SINE B2 -19 197 5 9 1053 1193 55 0 7 chr11 61465417 61465563 -60378293 + B1_Mus1 SINE Alu 2 146 -2 9 1053 194 121 29 29 chr11 61465577 61465645 -60378211 + A-rich Low_complexity Low_complexity 3 70 0 9 1053 243 79 0 0 chr11 61466175 61466213 -60377643 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 9 1053 1578 170 172 3 chr11 61466226 61466568 -60377288 + MTD LTR MaLR 20 419 0 9 1053 411 144 0 0 chr11 61467229 61467262 -60376594 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1053 297 89 0 0 chr11 61467262 61467307 -60376549 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1053 411 144 0 0 chr11 61467307 61467363 -60376493 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 1053 666 0 0 0 chr11 61467851 61467925 -60375931 + (TAGTG)n Simple_repeat Simple_repeat 5 78 0 9 1053 388 257 66 7 chr11 61469186 61469323 -60374533 - B1_Mus2 SINE Alu -1 146 2 9 1053 319 222 0 188 chr11 61469433 61469451 -60374405 + MT2B LTR ERVL 123 140 -461 9 1053 1473 161 5 0 chr11 61469451 61469675 -60374181 - URR1B DNA MER1_type 0 225 1 9 1053 319 222 0 188 chr11 61469675 61469715 -60374141 + MT2B LTR ERVL 141 154 -447 9 1053 625 178 0 0 chr11 61469715 61469816 -60374040 + B1_Mur4 SINE Alu 1 101 -49 9 1053 423 0 0 0 chr11 61470276 61470323 -60373533 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1053 651 259 37 77 chr11 61470339 61470621 -60373235 - ID_B1 SINE B4 -7 285 24 9 1053 312 27 0 0 chr11 61471287 61471324 -60372532 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1053 604 115 0 16 chr11 61471324 61471447 -60372409 + (CA)n Simple_repeat Simple_repeat 1 122 0 9 1053 639 0 0 0 chr11 61471450 61471521 -60372335 + (TC)n Simple_repeat Simple_repeat 1 71 0 9 1053 390 241 23 0 chr11 61471850 61471937 -60371919 - B1F SINE Alu -51 98 10 9 1053 220 338 0 40 chr11 61471879 61471953 -60371903 - B4A SINE B4 -140 152 82 9 1054 351 0 0 0 chr11 61474509 61474548 -60369308 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1054 941 163 7 13 chr11 61475498 61475647 -60368209 + B1_Mur4 SINE Alu 2 149 -1 9 1054 269 302 58 11 chr11 61475676 61475763 -60368093 - MIR SINE MIR -115 147 57 9 1054 229 125 18 18 chr11 61476092 61476149 -60367707 + CT-rich Low_complexity Low_complexity 2 58 0 9 1054 895 259 60 71 chr11 61476149 61476569 -60367287 - MT2B LTR ERVL -89 512 2 9 1054 293 229 57 0 chr11 61476923 61476993 -60366863 - ID2 SINE ID -1 82 9 9 1054 534 280 48 0 chr11 61477035 61477160 -60366696 + RSINE1 SINE B4 3 133 -32 9 1054 643 267 18 19 chr11 61477210 61477404 -60366452 + B3A SINE B2 25 216 0 9 1054 222 295 170 0 chr11 61477496 61477608 -60366248 + MIR SINE MIR 24 154 -108 9 1054 423 279 68 0 chr11 61477989 61478124 -60365732 + MIR SINE MIR 7 151 -117 9 1054 226 307 130 9 chr11 61480454 61480569 -60363287 - L2b LINE L2 -23 3352 3224 9 1054 235 333 86 0 chr11 61483134 61483227 -60360629 - MIRm SINE MIR -137 139 39 9 1054 223 163 23 0 chr11 61483691 61483734 -60360122 + L2b LINE L2 3332 3375 0 9 1054 491 244 25 16 chr11 61483801 61483922 -60359934 - B1F1 SINE Alu 0 149 28 9 1054 245 271 0 33 chr11 61483931 61483992 -60359864 - MIRb SINE MIR -92 176 118 9 1054 200 234 14 72 chr11 61484399 61484468 -60359388 + MIR SINE MIR 81 145 -63 9 1054 452 116 0 11 chr11 61486030 61486117 -60357739 + (GA)n Simple_repeat Simple_repeat 1 86 0 9 1054 410 358 11 22 chr11 61490685 61490865 -60352991 - MIRb SINE MIR -41 227 50 9 1054 687 75 0 0 chr11 61490892 61490986 -60352870 + (GGGA)n Simple_repeat Simple_repeat 1 94 0 9 1054 191 213 21 0 chr11 61491374 61491421 -60352435 + MIR SINE MIR 85 132 -76 9 1054 648 126 0 0 chr11 61491432 61491535 -60352321 + B2_Mm2 SINE B2 2 104 -91 9 1054 189 0 0 0 chr11 61491535 61491556 -60352300 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9 1054 607 287 76 10 chr11 61491643 61491840 -60352016 - B3 SINE B2 -6 210 1 9 1054 204 245 0 0 chr11 61492182 61492235 -60351621 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1054 276 298 68 34 chr11 61492722 61492868 -60350988 + L2b LINE L2 3225 3375 0 9 1054 270 278 33 11 chr11 61492876 61492967 -60350889 + G-rich Low_complexity Low_complexity 4 96 0 9 1054 5495 132 25 38 chr11 61493605 61494518 -60349338 - RMER19B LTR ERVK 0 902 2 9 1054 268 342 24 60 chr11 61494564 61494732 -60349124 + L2c LINE L2 2985 3146 -241 9 1054 234 333 172 43 chr11 61495188 61495467 -60348389 + L1MD LINE L1 5072 5386 -760 9 1054 2034 179 23 30 chr11 61495467 61495865 -60347991 + MTC LTR MaLR 27 421 0 9 1054 223 275 14 68 chr11 61496216 61496290 -60347566 - PB1D10 SINE Alu -31 86 17 9 1054 369 62 0 0 chr11 61496359 61496407 -60347449 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1054 215 209 14 43 chr11 61497847 61497917 -60345939 + (CCCCG)n Simple_repeat Simple_repeat 1 68 0 9 1054 231 266 12 57 chr11 61500347 61500441 -60343415 - MIRc SINE MIR -90 172 81 1 1054 266 282 0 0 chr11 61501581 61501652 -60342204 - MIRb SINE MIR -135 133 63 2 1054 424 319 70 59 chr11 61501758 61501993 -60341863 - MIRb SINE MIR -17 259 10 3 1054 224 303 178 13 chr11 61502837 61502994 -60340862 + MIRb SINE MIR 13 195 -73 4 1054 296 301 132 40 chr11 61503888 61504072 -60339784 - L1MEc LINE L1 -4583 1756 1460 5 1054 705 51 242 86 chr11 61504072 61504200 -60339656 - B1_Mus1 SINE Alu 0 148 1 6 1054 296 296 169 49 chr11 61504200 61504555 -60339301 - L1MEc LINE L1 -4941 1459 1062 5 1054 544 219 26 0 chr11 61504584 61504698 -60339158 - PB1D9 SINE Alu -2 118 2 7 1054 310 277 58 7 chr11 61504714 61504852 -60339004 - L1MEc LINE L1 -5545 855 711 5 1054 209 252 142 42 chr11 61505887 61506007 -60337849 - MIR3 SINE MIR -44 164 33 8 1054 227 315 90 11 chr11 61507446 61507560 -60336296 - MIR SINE MIR -95 181 52 9 1054 333 263 0 59 chr11 61509048 61509149 -60334707 - L3 LINE CR1 -113 4376 4282 1 1054 1004 162 201 0 chr11 61511134 61511313 -60332543 - B3 SINE B2 -1 215 1 1 1054 1204 61 0 0 chr11 61511769 61511916 -60331940 + B1_Mus2 SINE Alu 1 147 0 1 1054 225 0 0 0 chr11 61511916 61511941 -60331915 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1054 268 227 61 0 chr11 61512334 61512400 -60331456 + MER20 DNA MER1_type 90 159 -60 1 1054 283 346 0 0 chr11 61513272 61513350 -60330506 - MIRm SINE MIR -114 162 85 1 1054 189 228 71 71 chr11 61518339 61518424 -60325432 + MIR3 SINE MIR 117 201 -7 1 1054 563 242 23 23 chr11 61518449 61518580 -60325276 - B1F SINE Alu -7 142 12 1 1054 901 164 14 7 chr11 61519418 61519565 -60324291 - B1_Mur1 SINE Alu 0 149 2 1 1054 226 222 14 28 chr11 61520732 61520805 -60323051 - MIR SINE MIR -57 151 80 1 1054 225 0 0 0 chr11 61523688 61523713 -60320143 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1054 184 330 102 0 chr11 61524502 61524590 -60319266 - MIR3 SINE MIR -27 181 85 2 1054 202 328 5 0 chr11 61524859 61524929 -60318927 - MIRb SINE MIR -32 236 161 2 1054 555 16 0 0 chr11 61525833 61525897 -60317959 + (CATCC)n Simple_repeat Simple_repeat 5 68 0 2 1054 606 254 0 0 chr11 61526132 61526250 -60317606 - PB1D7 SINE Alu -2 118 1 2 1054 305 204 0 169 chr11 61526250 61526278 -60317578 - MT2B2 LTR ERVL -431 153 148 2 1054 273 267 132 30 chr11 61526383 61526578 -60317278 - L2c LINE L2 -299 3088 2895 2 1054 223 281 0 0 chr11 61528122 61528179 -60315677 + MIR3 SINE MIR 118 174 -34 2 1054 212 0 36 0 chr11 61529476 61529504 -60314352 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 1054 418 181 88 22 chr11 61529927 61529943 -60313913 + L1M4 LINE L1 5674 5694 -480 2 1054 423 0 0 0 chr11 61529943 61529990 -60313866 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1054 207 0 0 0 chr11 61529990 61530012 -60313844 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1054 452 171 59 8 chr11 61530012 61530130 -60313726 + L1M4 LINE L1 5695 5818 -366 2 1054 248 53 0 26 chr11 61530245 61530284 -60313572 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1054 1129 191 19 9 chr11 61530553 61530764 -60313092 - B3 SINE B2 -2 214 2 3 1054 486 49 0 0 chr11 61530980 61531041 -60312815 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1054 397 284 104 112 chr11 61531041 61531247 -60312609 - B4 SINE B4 -23 269 77 3 1054 965 128 7 20 chr11 61531247 61531398 -60312458 - B1_Mur4 SINE Alu 0 150 2 3 1054 397 284 104 112 chr11 61531398 61531460 -60312396 - B4 SINE B4 -216 76 3 3 1054 941 276 175 0 chr11 61531646 61532041 -60311815 - Tigger1 DNA MER2_type -1904 514 51 3 1054 613 121 34 28 chr11 61532041 61532220 -60311636 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1054 914 230 10 43 chr11 61532226 61532435 -60311421 + B3 SINE B2 15 216 0 3 1054 249 33 0 0 chr11 61532521 61532551 -60311305 + (CCA)n Simple_repeat Simple_repeat 1 30 0 4 1054 1603 168 98 6 chr11 61534656 61534973 -60308883 + ORR1C2 LTR MaLR 1 346 -38 4 1054 227 314 57 23 chr11 61535282 61535370 -60308486 - MLT1A1 LTR MaLR -2 406 316 4 1054 423 0 0 0 chr11 61535594 61535641 -60308215 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 4 1054 213 39 0 0 chr11 61536474 61536500 -60307356 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 4 1054 1168 62 7 0 chr11 61536579 61536725 -60307131 - B1_Mus2 SINE Alu 0 147 1 4 1054 211 203 51 0 chr11 61537252 61537311 -60306545 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1054 530 133 53 18 chr11 61537325 61537494 -60306362 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 4 1054 197 256 0 23 chr11 61538061 61538105 -60305751 - MIR SINE MIR -4 258 216 4 1054 273 222 63 0 chr11 61538126 61538194 -60305662 - ORR1E LTR MaLR -4 415 299 4 1054 335 202 213 37 chr11 61538299 61538407 -60305449 - ORR1E LTR MaLR -232 127 1 4 1054 509 168 9 61 chr11 61538958 61539072 -60304784 + B1_Mur1 SINE Alu 8 115 -34 4 1054 564 291 21 28 chr11 61539403 61539548 -60304308 - RSINE1 SINE B4 -19 146 3 5 1054 531 152 161 0 chr11 61539654 61539772 -60304084 - ORR1D1 LTR MaLR -236 138 2 5 1054 774 185 150 0 chr11 61540009 61540182 -60303674 - Lx8 LINE L1 -973 6500 6302 5 1054 21 57 0 0 chr11 61540754 61540789 -60303067 + AT_rich Low_complexity Low_complexity 1 35 0 5 1054 352 241 295 0 chr11 61541093 61541205 -60302651 - RSINE1 SINE B4 -17 148 4 5 1054 834 203 0 0 chr11 61542604 61542747 -60301109 + B3 SINE B2 1 143 -73 5 1054 204 97 0 0 chr11 61543961 61543992 -60299864 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1054 273 271 94 0 chr11 61544132 61544217 -60299639 + L1M4 LINE L1 5453 5545 -629 5 1054 223 297 27 13 chr11 61544248 61544323 -60299533 + RSINE1 SINE B4 90 165 0 5 1054 450 309 0 0 chr11 61544715 61544825 -60299031 - PB1D7 SINE Alu 0 120 11 5 1054 328 200 40 13 chr11 61545116 61545192 -60298664 - PB1 SINE Alu -26 101 24 6 1054 1414 66 22 5 chr11 61545231 61545415 -60298441 + B2_Mm2 SINE B2 1 187 -8 6 1054 698 169 46 72 chr11 61545424 61545577 -60298279 + B1_Mur1 SINE Alu 1 149 0 6 1054 1971 182 109 5 chr11 61545720 61546096 -60297760 - MTD LTR MaLR -2 417 3 6 1054 442 224 177 79 chr11 61546205 61546471 -60297385 - B4 SINE B4 0 292 1 6 1054 380 258 94 43 chr11 61546492 61546630 -60297226 - RSINE1 SINE B4 -11 154 10 6 1054 236 292 140 9 chr11 61546680 61546787 -60297069 + B1F2 SINE Alu 24 144 -5 6 1054 356 272 12 12 chr11 61546790 61546872 -60296984 + ID4_ SINE ID 2 83 0 6 1054 459 298 90 15 chr11 61547382 61547450 -60296406 - B3 SINE B2 0 216 141 6 1054 1421 90 16 0 chr11 61547450 61547638 -60296218 + B2_Mm2 SINE B2 2 192 -3 6 1054 1161 66 150 0 chr11 61547638 61547805 -60296051 + B2_Mm1a SINE B2 1 192 -1 7 1054 459 298 90 15 chr11 61547805 61547837 -60296019 - B3 SINE B2 -76 140 102 6 1054 216 0 0 0 chr11 61547837 61547861 -60295995 + (TTG)n Simple_repeat Simple_repeat 2 25 0 7 1054 537 194 41 0 chr11 61547861 61547959 -60295897 - B3A SINE B2 -96 102 1 7 1054 854 170 21 7 chr11 61548661 61548803 -60295053 + B1_Mus2 SINE Alu 3 146 -1 7 1054 204 40 0 0 chr11 61548887 61548912 -60294944 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1054 308 309 205 5 chr11 61548912 61549107 -60294749 + L1MC LINE L1 3956 4189 -1957 7 1054 195 42 0 0 chr11 61549186 61549210 -60294646 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1054 381 70 0 34 chr11 61549210 61549260 -60294596 - B1_Mus2 SINE Alu -11 136 87 7 1054 221 156 22 0 chr11 61549260 61549288 -60294568 + T-rich Low_complexity Low_complexity 21 49 0 7 1054 1232 20 7 27 chr11 61549288 61549438 -60294418 - B1_Mus1 SINE Alu 0 148 2 7 1054 221 156 22 0 chr11 61549438 61549454 -60294402 + T-rich Low_complexity Low_complexity 5 20 0 8 1054 483 315 129 28 chr11 61549837 61549905 -60293951 + B4A SINE B4 6 82 -210 8 1054 255 31 0 0 chr11 61549905 61549937 -60293919 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1054 483 315 129 28 chr11 61549937 61550116 -60293740 + B4A SINE B4 83 277 -15 8 1054 966 234 21 0 chr11 61550176 61550368 -60293488 + B3A SINE B2 2 197 -1 8 1054 628 143 139 23 chr11 61550687 61550816 -60293040 + B1_Mur4 SINE Alu 3 146 -4 8 1054 21 57 0 0 chr11 61551526 61551561 -60292295 + AT_rich Low_complexity Low_complexity 1 35 0 8 1054 450 191 67 11 chr11 61551686 61551776 -60292080 - B1_Mur2 SINE Alu -47 102 8 8 1054 308 248 58 68 chr11 61551687 61551807 -60292049 - ID_B1 SINE B4 -45 179 67 8 1054 418 285 171 12 chr11 61551880 61552234 -60291622 - L1M4 LINE L1 -2011 4135 3730 8 1054 368 262 47 37 chr11 61552367 61552474 -60291382 + PB1D7 SINE Alu 1 108 -12 8 1054 296 182 286 0 chr11 61552533 61552610 -60291246 - B3 SINE B2 -27 189 91 9 1054 635 160 247 84 chr11 61552654 61552832 -60291024 - B3 SINE B2 -5 211 5 9 1054 318 286 82 15 chr11 61553012 61553147 -60290709 - L1M4 LINE L1 -3688 2458 2315 8 1054 670 232 154 3 chr11 61553175 61553370 -60290486 - MTD LTR MaLR 0 421 203 9 1054 270 0 0 0 chr11 61553370 61553400 -60290456 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1054 213 39 0 0 chr11 61553400 61553425 -60290431 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 9 1054 552 292 13 81 chr11 61553425 61553463 -60290393 - MTD LTR MaLR -181 240 204 9 1054 218 222 0 0 chr11 61553463 61553508 -60290348 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1054 1260 41 0 0 chr11 61553508 61553654 -60290202 - B1_Mus1 SINE Alu -2 146 1 9 1054 758 196 0 45 chr11 61553664 61553819 -60290037 + B1_Mur3 SINE Alu 2 149 0 9 1054 574 219 44 0 chr11 61553856 61553970 -60289886 - RSINE1 SINE B4 -35 130 12 9 1054 804 134 116 43 chr11 61554109 61554273 -60289583 + B2_Mm2 SINE B2 1 176 -19 9 1054 1305 99 0 54 chr11 61554633 61554790 -60289066 + B2_Mm2 SINE B2 2 158 -37 1 1054 288 0 0 0 chr11 61554790 61554822 -60289034 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 1054 1305 99 0 54 chr11 61554822 61554867 -60288989 + B2_Mm2 SINE B2 159 193 -2 1 1054 669 303 26 86 chr11 61554957 61555087 -60288769 + B4A SINE B4 6 126 -166 1 1054 261 0 0 0 chr11 61555087 61555116 -60288740 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 1 1054 669 303 26 86 chr11 61555116 61555252 -60288604 + B4A SINE B4 127 256 -36 1 1054 637 173 185 0 chr11 61555537 61555699 -60288157 - B3 SINE B2 -24 192 1 1 1054 371 206 78 0 chr11 61555787 61555889 -60287967 + Lx5 LINE L1 6930 7039 -11 1 1054 1154 89 0 0 chr11 61555906 61556052 -60287804 + B1_Mus2 SINE Alu 1 146 -1 1 1054 222 0 79 0 chr11 61556138 61556176 -60287680 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1054 378 202 83 0 chr11 61556639 61556723 -60287133 + PB1 SINE Alu 37 127 0 1 1054 189 74 0 0 chr11 61556772 61556799 -60287057 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1054 824 173 0 8 chr11 61556803 61556937 -60286919 - B1_Mur3 SINE Alu -15 134 2 1 1054 1147 88 0 7 chr11 61557033 61557182 -60286674 - B1_Mus1 SINE Alu 0 148 1 1 1054 505 240 239 53 chr11 61557240 61557553 -60286303 + MTEb LTR MaLR 6 376 -3 1 1054 627 210 118 27 chr11 61558083 61558269 -60285587 + B3 SINE B2 2 204 -12 1 1054 473 249 158 45 chr11 61558729 61558906 -60284950 + B3A SINE B2 1 197 -1 1 1054 1049 103 0 14 chr11 61558914 61559062 -60284794 + B1_Mus1 SINE Alu 2 147 -1 1 1054 711 275 80 134 chr11 61559430 61559550 -60284306 + MTEb LTR MaLR 21 121 -258 1 1054 1095 48 7 46 chr11 61559550 61559702 -60284154 + B1_Mm SINE Alu 2 147 0 1 1054 722 261 103 19 chr11 61559702 61559958 -60283898 + MTEb LTR MaLR 122 377 -2 1 1054 375 228 61 137 chr11 61560221 61560514 -60283342 + L1M2 LINE L1 5169 5441 -856 1 1054 213 217 22 0 chr11 61560556 61560602 -60283254 + PB1D9 SINE Alu 69 115 -5 1 1054 1112 277 67 48 chr11 61560626 61560806 -60283050 + Lx8 LINE L1 5375 5546 -301 1 1054 758 231 65 5 chr11 61560806 61561006 -60282850 + B3 SINE B2 1 212 -4 1 1054 1112 285 71 38 chr11 61561006 61561413 -60282443 + Lx8 LINE L1 5547 6013 -1631 1 1054 507 194 37 0 chr11 61561417 61561525 -60282331 + B4 SINE B4 169 280 -12 1 1054 291 360 98 0 chr11 61561880 61562033 -60281823 + MER44D DNA MER2_type 13 180 -525 1 1054 644 228 8 0 chr11 61562244 61562371 -60281485 + B1_Mur2 SINE Alu 8 135 -14 1 1054 252 0 0 0 chr11 61562371 61562399 -60281457 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1 1054 1143 41 0 40 chr11 61562674 61562826 -60281030 + B1_Mm SINE Alu 1 146 -1 1 1054 199 292 170 0 chr11 61563075 61563181 -60280675 + L2 LINE L2 1846 1969 -1450 1 1054 1161 49 0 27 chr11 61563982 61563995 -60279861 - B1_Mus1 SINE Alu -1 147 138 1 1054 198 0 0 0 chr11 61563995 61564017 -60279839 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 1 1054 1161 49 0 27 chr11 61564017 61564151 -60279705 - B1_Mus1 SINE Alu -11 137 4 1 1054 299 286 17 0 chr11 61564449 61564529 -60279327 - PB1D10 SINE Alu -54 93 12 1 1054 250 329 13 0 chr11 61564465 61564541 -60279315 - ID_B1 SINE B4 -67 157 81 1 1054 986 249 14 14 chr11 61565310 61565526 -60278330 + B3 SINE B2 1 216 0 1 1054 543 309 0 0 chr11 61565547 61565683 -60278173 + B3 SINE B2 81 216 0 1 1054 706 242 121 0 chr11 61565719 61565909 -60277947 + ID_B1 SINE B4 7 219 -5 1 1054 216 318 22 43 chr11 61565963 61566055 -60277801 + PB1 SINE Alu 38 127 0 1 1054 232 233 50 0 chr11 61566117 61566177 -60277679 + B2_Mm2 SINE B2 1 63 -132 1 1054 284 343 38 0 chr11 61566885 61566990 -60276866 + PB1D10 SINE Alu 3 111 -6 1 1054 32 0 0 0 chr11 61567009 61567041 -60276815 + AT_rich Low_complexity Low_complexity 1 32 0 1 1054 1251 40 0 0 chr11 61567243 61567391 -60276465 - B1_Mus1 SINE Alu 0 148 1 1 1054 285 191 48 0 chr11 61567584 61567647 -60276209 + B1F SINE Alu 44 109 -40 1 1054 471 194 11 0 chr11 61567648 61567741 -60276115 + B2_Mm1t SINE B2 4 97 -96 1 1054 254 204 0 18 chr11 61567747 61567802 -60276054 + PB1D10 SINE Alu 63 116 -1 1 1054 186 314 20 0 chr11 61567855 61567906 -60275950 + MIRb SINE MIR 32 83 -185 1 1054 191 236 14 22 chr11 61568207 61568261 -60275595 - L2b LINE L2 -12 3375 3323 1 1054 351 149 51 112 chr11 61570363 61570461 -60273395 + MT2B LTR ERVL 166 257 -344 1 1054 833 99 15 30 chr11 61570373 61570508 -60273348 + B1_Mur2 SINE Alu 17 149 0 1 1054 289 289 21 0 chr11 61571550 61571647 -60272209 + B3A SINE B2 2 100 -98 1 1054 229 277 15 0 chr11 61572105 61572170 -60271686 + ID4 SINE ID 2 67 -16 1 1054 750 183 41 27 chr11 61572332 61572478 -60271378 - B1_Mur1 SINE Alu 0 149 2 1 1054 1472 53 32 0 chr11 61573099 61573286 -60270570 + B2_Mm1t SINE B2 1 193 0 1 1054 280 183 17 0 chr11 61573377 61573437 -60270419 + ID4 SINE ID 23 83 0 1 1054 864 155 7 7 chr11 61573534 61573677 -60270179 + B1_Mus1 SINE Alu 4 146 -2 1 1054 828 145 14 28 chr11 61573744 61573886 -60269970 + B1_Mus1 SINE Alu 2 141 -7 1 1054 595 219 152 21 chr11 61574084 61574275 -60269581 - B3 SINE B2 0 216 1 1 1054 243 0 0 0 chr11 61574675 61574702 -60269154 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1054 266 184 224 0 chr11 61574714 61574812 -60269044 - B1F2 SINE Alu -25 124 5 1 1054 237 65 0 0 chr11 61575088 61575119 -60268737 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1054 259 252 184 19 chr11 61575816 61575974 -60267882 + MIRb SINE MIR 55 238 -30 1 1054 712 244 30 6 chr11 61576026 61576191 -60267665 + B3A SINE B2 18 186 -12 1 1054 244 161 17 51 chr11 61576217 61576276 -60267580 - 4.5SRNA scRNA scRNA 0 94 38 1 1054 487 202 11 0 chr11 61576224 61576313 -60267543 - PB1D9 SINE Alu -29 91 2 1 1054 1631 47 0 5 chr11 61576407 61576601 -60267255 - B2_Mm1a SINE B2 0 193 1 1 1054 34 24 0 0 chr11 61576656 61576697 -60267159 + AT_rich Low_complexity Low_complexity 1 41 0 1 1054 1547 192 25 179 chr11 61576978 61577124 -60266732 + RMER5 LTR ERV1 17 153 -381 1 1054 1231 61 0 0 chr11 61577124 61577272 -60266584 - B1_Mus1 SINE Alu 0 148 1 1 1054 1547 192 25 179 chr11 61577272 61577527 -60266329 + RMER5 LTR ERV1 154 349 -185 1 1054 1135 35 7 40 chr11 61577527 61577678 -60266178 - B1_Mm SINE Alu 0 147 2 1 1054 1547 192 25 179 chr11 61577678 61577866 -60265990 + RMER5 LTR ERV1 350 516 -18 1 1054 261 0 0 0 chr11 61577866 61577895 -60265961 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1054 330 222 55 8 chr11 61578137 61578264 -60265592 - Lx9 LINE L1 -1 7643 7511 1 1054 1096 205 65 44 chr11 61578265 61578589 -60265267 + RMER19B LTR ERVK 1 293 -609 1 1054 1116 68 0 26 chr11 61578590 61578741 -60265115 + B1_Mus2 SINE Alu 1 147 0 1 1054 764 161 29 0 chr11 61578849 61578986 -60264870 + B1_Mur4 SINE Alu 10 150 0 1 1054 1318 106 21 0 chr11 61578994 61579183 -60264673 + B2_Mm2 SINE B2 1 193 -2 1 1054 907 198 16 5 chr11 61579255 61579288 -60264568 - B2_Mm2 SINE B2 0 195 163 1 1054 1177 75 0 0 chr11 61579288 61579435 -60264421 + B1_Mus1 SINE Alu 2 148 0 1 1054 907 198 16 5 chr11 61579435 61579594 -60264262 - B2_Mm2 SINE B2 -33 162 2 1 1054 1119 88 0 13 chr11 61580097 61580108 -60263748 - B1_Mus1 SINE Alu 0 148 139 1 1054 198 0 0 0 chr11 61580108 61580130 -60263726 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1054 1119 88 0 13 chr11 61580130 61580268 -60263588 - B1_Mus1 SINE Alu -10 138 1 1 1054 840 286 36 23 chr11 61580772 61581080 -60262776 - RMER5 LTR ERV1 -27 507 196 1 1054 377 110 14 0 chr11 61581418 61581491 -60262365 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1054 388 156 100 38 chr11 61582264 61582344 -60261512 - B3 SINE B2 0 216 132 1 1054 231 255 0 56 chr11 61582386 61582440 -60261416 - RSINE1 SINE B4 -1 164 114 1 1054 310 222 16 0 chr11 61582453 61582516 -60261340 - B1F SINE Alu -53 96 33 1 1054 232 182 18 18 chr11 61582612 61582668 -60261188 - B1F2 SINE Alu -93 56 1 1 1054 402 290 21 0 chr11 61582710 61582803 -60261053 - B3A SINE B2 -33 165 71 1 1054 315 148 164 0 chr11 61582905 61582966 -60260890 - ID4 SINE ID -9 74 4 1 1054 1125 66 0 0 chr11 61583017 61583154 -60260702 - B1_Mus1 SINE Alu -10 138 2 1 1054 1053 75 0 0 chr11 61583928 61584062 -60259794 - B1_Mus1 SINE Alu -13 135 2 1 1054 328 202 100 11 chr11 61584248 61584338 -60259518 - MTEb LTR MaLR -4 375 278 1 1054 2554 145 199 45 chr11 61584360 61584894 -60258962 + RLTR18 LTR ERVK 1 616 0 1 1054 235 224 79 0 chr11 61585025 61585101 -60258755 - MTEb LTR MaLR -288 82 1 1 1054 295 258 0 0 chr11 61585291 61585357 -60258499 + B3A SINE B2 28 93 -105 1 1054 249 239 55 27 chr11 61585631 61585704 -60258152 - PB1D7 SINE Alu -3 117 43 1 1054 180 0 0 0 chr11 61585934 61585954 -60257902 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1 1054 966 31 8 8 chr11 61585956 61586086 -60257770 + B1_Mm SINE Alu 18 147 0 1 1054 204 97 0 0 chr11 61586088 61586119 -60257737 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1054 546 255 127 29 chr11 61586238 61586563 -60257293 + MER31A LTR ERV1 10 346 -139 1 1054 363 221 233 26 chr11 61586571 61586687 -60257169 - B3 SINE B2 -76 140 1 1 1054 189 171 0 0 chr11 61586717 61586752 -60257104 + (TATG)n Simple_repeat Simple_repeat 4 38 0 1 1054 352 312 77 29 chr11 61586808 61587016 -60256840 - B4A SINE B4 -74 218 1 1 1054 1047 73 0 7 chr11 61587595 61587733 -60256123 + B1_Mm SINE Alu 2 138 -9 1 1054 189 0 0 0 chr11 61587733 61587754 -60256102 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1 1054 712 175 15 0 chr11 61587875 61588012 -60255844 - B1_Mur2 SINE Alu -2 147 9 2 1054 301 230 20 0 chr11 61591653 61591753 -60252103 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1054 446 318 60 0 chr11 61592242 61592393 -60251463 - Tigger7 DNA MER2_type -2220 271 112 2 1054 1020 210 35 10 chr11 61592458 61592660 -60251196 + B3 SINE B2 3 209 -7 2 1054 1368 106 11 5 chr11 61592697 61592887 -60250969 - B2_Mm2 SINE B2 -3 192 2 2 1054 942 162 14 0 chr11 61592891 61593039 -60250817 - B1_Mur4 SINE Alu 0 150 1 2 1054 1260 34 0 0 chr11 61593599 61593746 -60250110 + B1_Mm SINE Alu 1 147 0 2 1054 1052 60 27 0 chr11 61593885 61594034 -60249822 + B2_Mm2 SINE B2 2 154 -41 2 1054 234 0 0 0 chr11 61594035 61594061 -60249795 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2 1054 249 31 0 0 chr11 61594340 61594366 -60249490 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1054 1158 62 14 0 chr11 61594366 61594511 -60249345 - B1_Mus2 SINE Alu 0 147 1 2 1054 219 88 0 0 chr11 61594805 61594839 -60249017 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1054 953 162 0 0 chr11 61594839 61594987 -60248869 - B1_Mur3 SINE Alu 0 149 2 2 1054 282 276 13 13 chr11 61595747 61595824 -60248032 - PB1D10 SINE Alu -11 106 30 2 1054 23 0 0 0 chr11 61595857 61595880 -60247976 + AT_rich Low_complexity Low_complexity 1 23 0 2 1054 3797 129 54 73 chr11 61596160 61596283 -60247573 + RLTR17 LTR ERVK 4 102 -590 2 1054 1189 68 0 0 chr11 61596283 61596430 -60247426 - B1_Mus2 SINE Alu 0 147 1 2 1054 3797 129 54 73 chr11 61596430 61597008 -60246848 + RLTR17 LTR ERVK 103 692 0 2 1054 201 39 0 0 chr11 61597268 61597294 -60246562 + (TA)n Simple_repeat Simple_repeat 1 26 0 2 1054 810 252 15 0 chr11 61597550 61597756 -60246100 + B3 SINE B2 2 210 -6 2 1054 255 301 14 14 chr11 61597809 61597883 -60245973 + B4 SINE B4 6 79 -213 2 1054 273 125 0 0 chr11 61598141 61598197 -60245659 + (T)n Simple_repeat Simple_repeat 1 56 0 2 1054 967 53 45 0 chr11 61598197 61598329 -60245527 - B1_Mus2 SINE Alu 0 147 10 2 1054 434 61 0 15 chr11 61598357 61598424 -60245432 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2 1054 884 64 47 54 chr11 61598424 61598573 -60245283 - B2_Mm1a SINE B2 -44 149 2 2 1054 220 284 19 87 chr11 61598614 61598673 -60245183 - PB1D7 SINE Alu -14 106 52 2 1054 1203 78 43 27 chr11 61598673 61598858 -60244998 - B2_Mm1t SINE B2 -5 188 1 2 1054 220 284 19 87 chr11 61598858 61598902 -60244954 - PB1D7 SINE Alu -69 51 10 2 1054 463 292 117 23 chr11 61599239 61599495 -60244361 - B4A SINE B4 -10 282 3 2 1054 599 281 131 0 chr11 61599498 61599697 -60244159 - B4A SINE B4 -65 227 3 2 1054 332 264 45 22 chr11 61600037 61600126 -60243730 - B1F1 SINE Alu -51 98 8 2 1054 248 0 31 0 chr11 61600269 61600301 -60243555 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1054 717 82 0 0 chr11 61600301 61600399 -60243457 - B1_Mus2 SINE Alu -8 139 42 2 1054 316 232 14 0 chr11 61600402 61600471 -60243385 - Lx8 LINE L1 -136 7337 7268 2 1054 1235 21 7 7 chr11 61600562 61600708 -60243148 - B1_Mm SINE Alu 0 147 2 2 1054 365 232 46 1 chr11 61600708 61600798 -60243058 + B1_Mur2 SINE Alu 30 148 -1 2 1054 222 37 0 0 chr11 61601533 61601560 -60242296 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1054 1259 41 0 0 chr11 61601560 61601707 -60242149 - B1_Mm SINE Alu 0 147 1 2 1054 743 206 7 0 chr11 61601792 61601933 -60241923 - B1_Mur4 SINE Alu 0 150 9 2 1054 451 306 18 35 chr11 61601933 61601974 -60241882 - ID_B1 SINE B4 0 224 46 2 1054 2560 82 44 24 chr11 61602111 61602524 -60241332 + RMER16 LTR ERVK 113 533 0 2 1054 398 199 20 92 chr11 61602528 61602655 -60241201 + B1_Mur4 SINE Alu 10 120 0 2 1054 202 100 0 70 chr11 61602731 61602774 -60241082 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1054 307 64 0 0 chr11 61602815 61602862 -60240994 - L1Md_F3 LINE L1 -14 6570 6524 2 1054 652 233 111 0 chr11 61603056 61603228 -60240628 - B3A SINE B2 -5 193 3 2 1054 1506 73 16 0 chr11 61603242 61603433 -60240423 - B2_Mm2 SINE B2 0 195 2 2 1054 1126 78 0 0 chr11 61603549 61603703 -60240153 - B2_Mm2 SINE B2 -41 154 1 2 1054 336 312 7 79 chr11 61603692 61603718 -60240138 + ID SINE ID 65 80 -144 2 131 389 293 10 32 chr11 61603718 61603847 -60240009 + B1F1 SINE Alu 1 127 -21 2 1055 414 0 0 0 chr11 61603848 61603894 -60239962 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1055 642 237 84 0 chr11 61603915 61604046 -60239810 + B1_Mur1 SINE Alu 1 142 -7 2 1055 851 232 77 5 chr11 61604058 61604253 -60239603 + B3 SINE B2 1 209 -7 2 1055 345 239 0 0 chr11 61604286 61604353 -60239503 + ID_B1 SINE B4 97 163 -61 2 1055 422 203 0 13 chr11 61604372 61604447 -60239409 + ID4 SINE ID 5 78 -5 2 1055 1226 27 7 0 chr11 61604470 61604616 -60239240 + B1_Mus2 SINE Alu 1 147 0 2 1055 333 68 0 0 chr11 61605177 61605221 -60238635 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 2 1055 869 111 0 0 chr11 61605227 61605353 -60238503 - B1_Mus2 SINE Alu -8 139 14 2 1055 942 70 147 0 chr11 61605353 61605482 -60238374 + B1_Mus1 SINE Alu 1 148 0 2 1055 216 0 0 0 chr11 61605484 61605508 -60238348 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1055 409 278 0 27 chr11 61605522 61605640 -60238216 + PB1D9 SINE Alu 3 115 -5 2 1055 24 32 0 0 chr11 61605647 61605678 -60238178 + AT_rich Low_complexity Low_complexity 1 31 0 2 1055 853 283 0 5 chr11 61606163 61606369 -60237487 - B3 SINE B2 -11 205 1 2 1055 278 227 0 120 chr11 61606438 61606513 -60237343 + B1_Mur1 SINE Alu 63 128 -21 2 1055 1085 107 0 17 chr11 61606517 61606673 -60237183 + B2_Mm2 SINE B2 4 158 -37 2 1055 201 74 0 0 chr11 61606673 61606700 -60237156 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1055 1085 107 0 17 chr11 61606700 61606715 -60237141 + B2_Mm2 SINE B2 159 172 -23 2 1055 609 271 77 0 chr11 61607211 61607392 -60236464 - B3A SINE B2 -3 195 1 2 1055 437 268 34 0 chr11 61607728 61607853 -60236003 + ID_B1 SINE B4 80 223 -69 2 1055 238 341 82 50 chr11 61608597 61608779 -60235077 - ORR1E LTR MaLR -166 193 6 2 1055 426 251 183 24 chr11 61608779 61608905 -60234951 - L1M2 LINE L1 -959 5184 5024 2 1055 1157 48 0 40 chr11 61608905 61609056 -60234800 - B1_Mm SINE Alu -1 146 2 2 1055 426 251 183 24 chr11 61609056 61609137 -60234719 - L1M2 LINE L1 -1120 5023 4944 2 1055 582 255 209 0 chr11 61609172 61609368 -60234488 - Tigger2b DNA MER2_type -218 508 272 2 1055 342 0 0 0 chr11 61609516 61609554 -60234302 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1055 350 251 136 15 chr11 61609599 61609797 -60234059 + L1M4b LINE L1 2199 2420 -4682 2 1055 227 317 146 47 chr11 61609884 61610076 -60233780 + B4A SINE B4 6 216 -76 2 1055 279 252 27 45 chr11 61610164 61610276 -60233580 + L1M4b LINE L1 2312 2421 -4913 2 1055 376 264 75 5 chr11 61610419 61610586 -60233270 + B3A SINE B2 1 179 -16 2 1055 575 250 16 43 chr11 61610587 61610775 -60233081 + L1M4b LINE L1 2623 2805 -4529 2 1055 245 300 103 48 chr11 61610832 61610958 -60232898 - B3A SINE B2 -2 196 64 2 1055 481 252 34 0 chr11 61610959 61611078 -60232778 + B3 SINE B2 91 213 -3 2 1055 287 242 82 38 chr11 61611108 61611267 -60232589 + L1M4b LINE L1 2968 3133 -4201 2 1055 546 172 0 11 chr11 61611295 61611389 -60232467 + B1_Mus2 SINE Alu 50 142 -5 2 1055 785 194 14 0 chr11 61611442 61611581 -60232275 + B1F2 SINE Alu 5 145 -4 2 1055 824 169 7 20 chr11 61611837 61611988 -60231868 + B1_Mur2 SINE Alu 1 149 0 2 1055 297 206 28 56 chr11 61612440 61612512 -60231344 + MLT1E1A LTR MaLR 600 669 -11 2 1055 311 309 66 78 chr11 61613175 61613431 -60230425 + MIRb SINE MIR 3 255 -7 2 1055 293 228 70 0 chr11 61613810 61613867 -60229989 - B4 SINE B4 -13 279 219 2 1055 357 316 9 9 chr11 61614086 61614201 -60229655 + PB1D10 SINE Alu 1 115 -2 2 1055 765 174 23 0 chr11 61614323 61614455 -60229401 + B1F2 SINE Alu 2 136 -13 2 1055 180 97 0 0 chr11 61614457 61614488 -60229368 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1055 339 191 328 34 chr11 61614804 61614923 -60228933 - ID_B1 SINE B4 -6 218 65 2 1055 485 311 185 37 chr11 61615318 61615615 -60228241 + LTR16B LTR ERVL 37 377 -86 2 1055 705 273 136 16 chr11 61615926 61616183 -60227673 - B4A SINE B4 -4 288 1 2 1055 181 139 47 0 chr11 61616405 61616448 -60227408 + CT-rich Low_complexity Low_complexity 1 45 0 2 1055 1380 89 16 5 chr11 61616448 61616639 -60227217 - B2_Mm2 SINE B2 0 195 3 2 1055 543 312 89 31 chr11 61616707 61616932 -60226924 - B4A SINE B4 -43 249 12 2 1055 505 227 164 0 chr11 61617433 61617561 -60226295 + B1_Mur2 SINE Alu 1 149 0 2 1055 656 205 6 0 chr11 61617603 61617759 -60226097 + GA-rich Low_complexity Low_complexity 3 159 0 2 1055 1291 242 121 28 chr11 61618080 61618551 -60225305 - Charlie1a DNA MER1_type -203 1252 738 2 1055 544 220 18 35 chr11 61618575 61618688 -60225168 + B3A SINE B2 3 113 -85 2 1055 511 285 0 65 chr11 61618759 61618928 -60224928 + B3 SINE B2 53 210 -6 2 1055 1196 287 194 9 chr11 61618985 61619526 -60224330 - Charlie1a DNA MER1_type -769 686 46 2 1055 189 0 0 0 chr11 61619627 61619648 -60224208 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2 1055 1227 54 0 0 chr11 61619651 61619798 -60224058 - B1_Mus1 SINE Alu -1 147 1 2 1055 820 162 42 14 chr11 61619798 61619941 -60223915 - B1_Mur4 SINE Alu -2 148 1 2 1055 1205 68 0 0 chr11 61620099 61620247 -60223609 + B1_Mus1 SINE Alu 1 148 0 2 1055 387 253 36 0 chr11 61620593 61620676 -60223180 - B1F SINE Alu -55 94 9 2 1055 425 257 47 67 chr11 61620725 61620875 -60222981 - B1_Mur1 SINE Alu -2 147 1 2 1055 700 271 0 0 chr11 61620882 61621022 -60222834 - ID_B1 SINE B4 -5 219 80 3 1055 1558 51 0 5 chr11 61621031 61621227 -60222629 - B2_Mm2 SINE B2 0 195 1 3 1055 316 276 39 13 chr11 61621352 61621429 -60222427 - ID SINE ID -144 80 2 3 1055 380 239 55 9 chr11 61621923 61622033 -60221823 + PB1D9 SINE Alu 1 115 -5 3 1055 311 113 0 19 chr11 61622077 61622131 -60221725 + (GGA)n Simple_repeat Simple_repeat 2 54 0 3 1055 709 144 114 0 chr11 61622774 61622906 -60220950 + B1_Mus1 SINE Alu 1 147 -1 3 1055 782 174 12 0 chr11 61622920 61623081 -60220775 + GA-rich Low_complexity Low_complexity 3 165 0 3 1055 963 128 122 0 chr11 61623222 61623394 -60220462 - B2_Mm2 SINE B2 -2 193 1 3 1055 3308 150 80 16 chr11 61623417 61624030 -60219826 + RLTR17 LTR ERVK 1 619 -73 3 1055 817 176 7 0 chr11 61624193 61624335 -60219521 + B1F2 SINE Alu 2 144 -5 3 1055 1184 77 35 12 chr11 61624430 61624600 -60219256 - B2_Mm2 SINE B2 -20 175 2 3 1055 1412 94 0 5 chr11 61624604 61624796 -60219060 - B2_Mm2 SINE B2 -4 191 1 3 1055 313 328 78 8 chr11 61625078 61625207 -60218649 + ID_B1 SINE B4 86 223 -1 3 1055 373 237 116 25 chr11 61625091 61625212 -60218644 + B1F SINE Alu 18 149 0 3 1055 378 256 0 0 chr11 61625216 61625294 -60218562 + ID4_ SINE ID 2 79 -4 3 1055 1371 57 11 6 chr11 61625350 61625528 -60218328 + B2_Mm1a SINE B2 1 179 -14 3 1055 1151 70 6 0 chr11 61625528 61625686 -60218170 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 3 1055 405 266 65 36 chr11 61625700 61625826 -60218030 + B1F SINE Alu 10 148 -1 3 1055 459 288 26 33 chr11 61626032 61626183 -60217673 - ID_B1 SINE B4 -74 150 1 3 1055 575 281 29 0 chr11 61626398 61626537 -60217319 - B1_Mur1 SINE Alu -6 143 1 3 1055 489 263 26 9 chr11 61626653 61626768 -60217088 - PB1D9 SINE Alu -1 119 3 3 1055 326 268 119 7 chr11 61626945 61627088 -60216768 + Tigger9b DNA MER2_type 376 534 -90 3 1055 211 194 0 0 chr11 61627134 61627170 -60216686 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1055 277 281 44 110 chr11 61627190 61627326 -60216530 - PB1 SINE Alu 0 127 1 3 1055 339 289 19 89 chr11 61627987 61628200 -60215656 + B3A SINE B2 1 198 0 3 1055 191 61 30 0 chr11 61628375 61628408 -60215448 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1055 355 318 126 76 chr11 61628631 61628893 -60214963 + HAL1 LINE L1 92 366 -2141 3 1055 476 185 12 0 chr11 61628923 61629004 -60214852 + RSINE1 SINE B4 53 134 -31 3 1055 376 272 0 71 chr11 61629013 61629112 -60214744 + MT2B LTR ERVL 166 257 -344 3 1055 696 178 51 0 chr11 61629030 61629148 -60214708 + B1_Mus1 SINE Alu 20 143 -5 3 1055 1198 68 0 0 chr11 61629157 61629303 -60214553 + B1_Mus2 SINE Alu 2 147 0 3 1055 212 0 36 0 chr11 61629313 61629341 -60214515 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 1055 338 61 0 20 chr11 61629569 61629619 -60214237 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1055 612 233 74 15 chr11 61629643 61629778 -60214078 - B1_Mur2 SINE Alu -6 143 1 3 1055 654 153 50 71 chr11 61629802 61629943 -60213913 + B1_Mus1 SINE Alu 11 148 0 3 1055 198 0 0 0 chr11 61630423 61630445 -60213411 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1055 923 245 26 5 chr11 61630529 61630718 -60213138 + B3 SINE B2 21 213 -3 3 1055 1278 27 0 0 chr11 61630800 61630947 -60212909 - B1_Mus2 SINE Alu 0 147 1 3 1055 783 203 0 33 chr11 61631398 61631551 -60212305 + B1_Mur3 SINE Alu 1 148 -1 3 1055 263 250 109 55 chr11 61632349 61632459 -60211397 + PB1D10 SINE Alu 1 116 -1 3 1055 26 0 0 0 chr11 61633226 61633252 -60210604 + AT_rich Low_complexity Low_complexity 1 26 0 3 1055 1181 61 0 0 chr11 61633549 61633696 -60210160 + B1_Mus1 SINE Alu 2 148 0 3 1055 412 208 0 19 chr11 61633698 61633806 -60210050 + GA-rich Low_complexity Low_complexity 2 107 0 3 1055 573 225 0 51 chr11 61634244 61634361 -60209495 - B1_Mur2 SINE Alu -36 113 3 3 1055 645 250 45 50 chr11 61634381 61634579 -60209277 - B3A SINE B2 0 198 2 3 1055 1229 54 0 0 chr11 61634909 61635056 -60208800 - B1_Mus2 SINE Alu 0 147 1 3 1055 481 129 0 21 chr11 61635274 61635369 -60208487 + CT-rich Low_complexity Low_complexity 3 95 0 3 1055 552 30 0 0 chr11 61635409 61635475 -60208381 + (TTTTC)n Simple_repeat Simple_repeat 4 69 0 3 1055 812 173 7 14 chr11 61635475 61635607 -60208249 - B1_Mur2 SINE Alu -14 135 3 3 1055 235 253 53 0 chr11 61635656 61635731 -60208125 - ID4_ SINE ID -3 80 2 3 1055 513 0 0 0 chr11 61636478 61636535 -60207321 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1055 845 233 118 20 chr11 61636566 61636820 -60207036 + ORR1E-int LTR MaLR 742 1020 -560 3 1055 886 264 183 30 chr11 61636838 61637142 -60206714 + ORR1E-int LTR MaLR 1174 1527 -53 3 1055 660 280 166 52 chr11 61637142 61637432 -60206424 + ORR1E LTR MaLR 1 323 -36 3 1055 1018 57 7 0 chr11 61637438 61637578 -60206278 - L1Md_F2 LINE L1 -12 6570 6430 3 1055 209 316 115 35 chr11 61637708 61637772 -60206084 - MIRb SINE MIR -73 195 122 3 1055 1448 58 11 5 chr11 61637772 61637962 -60205894 + B2_Mm2 SINE B2 1 191 -4 3 1055 212 288 96 13 chr11 61637962 61638071 -60205785 - MIRc SINE MIR -147 121 5 3 1055 756 154 30 8 chr11 61638411 61638542 -60205314 + B1_Mur3 SINE Alu 1 134 -15 3 1055 492 193 140 0 chr11 61638574 61638688 -60205168 + RSINE1 SINE B4 7 136 -29 3 1055 189 0 0 0 chr11 61638698 61638719 -60205137 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1055 522 280 6 57 chr11 61638741 61638900 -60204956 + B3A SINE B2 48 198 0 3 1055 21 36 0 0 chr11 61638903 61638931 -60204925 + AT_rich Low_complexity Low_complexity 1 28 0 3 1055 671 277 0 6 chr11 61638953 61639109 -60204747 + RSINE1 SINE B4 3 157 -8 3 1055 22 0 0 0 chr11 61639122 61639144 -60204712 + AT_rich Low_complexity Low_complexity 1 22 0 3 1055 530 311 122 23 chr11 61639519 61639864 -60203992 + L1MEf LINE L1 1551 1929 -4271 3 1055 406 335 211 21 chr11 61639913 61640809 -60203047 + L2a LINE L2 2312 3425 -1 3 1055 903 148 7 13 chr11 61640826 61640977 -60202879 + B1_Mur4 SINE Alu 1 150 0 3 1055 227 73 49 0 chr11 61640980 61641021 -60202835 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 3 1055 23 33 0 0 chr11 61641646 61641676 -60202180 + AT_rich Low_complexity Low_complexity 1 30 0 3 1055 1213 41 0 0 chr11 61641685 61641832 -60202024 + B1_Mus1 SINE Alu 2 148 0 3 1055 259 308 104 19 chr11 61642137 61642243 -60201613 + PB1D10 SINE Alu 1 115 -2 3 1055 200 121 0 29 chr11 61642243 61642272 -60201584 + A-rich Low_complexity Low_complexity 2 30 0 3 1055 285 128 0 0 chr11 61642470 61642517 -60201339 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 1055 238 290 64 18 chr11 61642728 61642837 -60201019 + PB1D10 SINE Alu 1 114 -3 3 1055 679 0 0 0 chr11 61643115 61643199 -60200657 + L1Md_A LINE L1 6499 6582 0 3 1055 22 35 0 0 chr11 61643584 61643613 -60200243 + AT_rich Low_complexity Low_complexity 1 29 0 3 1055 196 341 0 45 chr11 61643986 61644075 -60199781 + L2 LINE L2 2477 2561 -858 3 1055 342 143 0 0 chr11 61644354 61644417 -60199439 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1055 588 202 9 17 chr11 61644574 61644690 -60199166 - PB1D10 SINE Alu 0 117 3 3 1055 1165 88 6 0 chr11 61644805 61644964 -60198892 + B2_Mm1t SINE B2 1 160 -33 3 1055 531 0 0 0 chr11 61644964 61645023 -60198833 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 3 1055 397 315 9 0 chr11 61645089 61645197 -60198659 - PB1D10 SINE Alu 0 117 9 3 1055 232 360 68 59 chr11 61645107 61645225 -60198631 - B4A SINE B4 -102 190 72 3 1055 397 171 0 118 chr11 61645247 61645344 -60198512 - B1_Mur1 SINE Alu 0 149 38 3 1055 348 123 0 0 chr11 61645564 61645573 -60198283 + (A)n Simple_repeat Simple_repeat 1 9 0 3 1055 1220 54 0 0 chr11 61645573 61645720 -60198136 + B1_Mus2 SINE Alu 1 147 0 3 1055 348 123 0 0 chr11 61645720 61645767 -60198089 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1055 793 147 35 0 chr11 61645814 61645957 -60197899 - B1_Mus1 SINE Alu 0 148 1 3 1055 1174 229 88 102 chr11 61646040 61646404 -60197452 + ORR1E LTR MaLR 1 359 0 3 1055 21 0 0 0 chr11 61646439 61646460 -60197396 + AT_rich Low_complexity Low_complexity 1 21 0 3 1055 434 245 152 10 chr11 61646464 61646563 -60197293 + B1F2 SINE Alu 2 114 -35 3 1055 730 177 57 0 chr11 61646603 61646727 -60197129 + B3 SINE B2 1 131 -85 3 1055 3626 42 0 0 chr11 61647182 61647613 -60196243 + L1Md_F3 LINE L1 6142 6572 -12 3 1055 21 0 0 0 chr11 61647687 61647708 -60196148 + AT_rich Low_complexity Low_complexity 1 21 0 3 1055 1164 138 0 27 chr11 61648053 61648239 -60195617 + B2_Mm2 SINE B2 1 181 -14 3 1055 1569 32 16 5 chr11 61649019 61649209 -60194647 + B2_Mm1a SINE B2 2 193 0 3 1055 471 309 107 0 chr11 61649562 61649730 -60194126 + B3A SINE B2 2 187 -11 3 1055 1204 61 0 0 chr11 61649869 61650016 -60193840 - B1_Mm SINE Alu 0 147 1 3 1055 1380 62 17 6 chr11 61650043 61650221 -60193635 - B2_Mm2 SINE B2 -14 181 2 3 1055 238 238 26 137 chr11 61650285 61650402 -60193454 + MT2B LTR ERVL 147 250 -351 3 1055 590 179 18 18 chr11 61650308 61650422 -60193434 + PB1D9 SINE Alu 6 119 -1 3 1055 448 193 100 9 chr11 61650577 61650687 -60193169 - B1_Mm SINE Alu 0 147 28 3 1055 419 241 0 104 chr11 61650774 61650899 -60192957 + PB1D9 SINE Alu 1 112 -8 3 1055 412 342 9 0 chr11 61650926 61651037 -60192819 + ID_B1 SINE B4 93 204 -20 4 1055 593 144 11 0 chr11 61651052 61651142 -60192714 + B1_Mur1 SINE Alu 26 116 -33 4 1055 545 223 144 52 chr11 61651172 61651366 -60192490 + B3 SINE B2 5 216 0 4 1055 1483 63 21 0 chr11 61651422 61651613 -60192243 - B2_Mm2 SINE B2 0 195 1 4 1055 460 219 6 101 chr11 61651682 61651850 -60192006 + CYRA11_Mm Unknown Y-chromosome 165 316 -301 4 1055 903 64 7 79 chr11 61651699 61651851 -60192005 - URR1A DNA MER1_type -5 221 81 4 1055 921 160 0 32 chr11 61651857 61652012 -60191844 + MTC LTR MaLR 1 150 -257 4 1055 2491 92 150 49 chr11 61652016 61652483 -60191373 - RMER2 LTR ERV1 -4 563 50 4 1055 1357 136 71 13 chr11 61652500 61652738 -60191118 + MTC LTR MaLR 162 413 -8 4 1055 239 146 0 0 chr11 61652742 61652783 -60191073 - URR1A DNA MER1_type -185 41 1 4 1055 447 116 244 59 chr11 61652950 61653069 -60190787 - B1_Mur4 SINE Alu -9 141 1 4 1055 735 241 29 0 chr11 61653399 61653536 -60190320 + RSINE1 SINE B4 1 141 -24 4 1055 261 0 0 0 chr11 61653545 61653574 -60190282 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1055 198 0 0 0 chr11 61653657 61653679 -60190177 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1055 359 207 70 47 chr11 61653736 61653822 -60190034 + MT2B LTR ERVL 170 257 -344 4 1055 618 174 18 0 chr11 61653755 61653864 -60189992 + B1_Mur4 SINE Alu 39 149 -1 4 1055 638 186 0 9 chr11 61654014 61654128 -60189728 + PB1D9 SINE Alu 1 113 -7 4 1055 1411 85 16 0 chr11 61654138 61654327 -60189529 + B2_Mm1t SINE B2 2 193 0 4 1055 819 161 34 34 chr11 61654423 61654571 -60189285 - B1_Mur2 SINE Alu 0 149 2 4 1055 25 65 0 0 chr11 61654650 61654696 -60189160 + AT_rich Low_complexity Low_complexity 1 46 0 4 1055 1149 61 0 7 chr11 61655684 61655832 -60188024 + B1_Mus1 SINE Alu 2 148 0 4 1055 198 0 0 0 chr11 61655853 61655875 -60187981 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1055 267 321 0 47 chr11 61656172 61656257 -60187599 + ID4_ SINE ID 3 83 0 4 1055 276 30 0 0 chr11 61656597 61656630 -60187226 + (TCC)n Simple_repeat Simple_repeat 3 35 0 4 1055 216 0 0 0 chr11 61656630 61656654 -60187202 + (CTG)n Simple_repeat Simple_repeat 2 25 0 4 1055 675 164 19 103 chr11 61656660 61656716 -60187140 + B1_Mus1 SINE Alu 6 51 -97 4 1055 1105 69 0 14 chr11 61656716 61656863 -60186993 - B1_Mus2 SINE Alu -1 146 2 4 1055 675 164 19 103 chr11 61656863 61656962 -60186894 + B1_Mus1 SINE Alu 52 148 0 4 1055 307 258 100 58 chr11 61657224 61657357 -60186499 + B4 SINE B4 133 270 -22 4 1055 281 26 26 0 chr11 61657358 61657396 -60186460 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1055 423 290 83 6 chr11 61657407 61657563 -60186293 + L1M5 LINE L1 5270 5437 -736 4 1055 1133 70 0 0 chr11 61657568 61657711 -60186145 + B1_Mus2 SINE Alu 2 144 -3 4 1055 1092 137 21 16 chr11 61657719 61657877 -60185979 + B2_Mm2 SINE B2 2 158 -37 4 1055 275 65 22 0 chr11 61657877 61657923 -60185933 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1055 1092 137 21 16 chr11 61657923 61657957 -60185899 + B2_Mm2 SINE B2 159 194 -1 4 1055 679 263 24 5 chr11 61657957 61658114 -60185742 + ID_B1 SINE B4 70 224 -68 4 1055 236 276 50 14 chr11 61658141 61658231 -60185625 + L1M5 LINE L1 5450 5553 -891 4 1055 213 121 0 0 chr11 61658459 61658492 -60185364 + (GGA)n Simple_repeat Simple_repeat 2 34 0 4 1055 810 198 122 5 chr11 61658636 61658824 -60185032 + B3 SINE B2 1 210 -6 4 1055 532 223 122 8 chr11 61659154 61659285 -60184571 - B1_Mur2 SINE Alu -3 146 1 4 1055 296 246 0 13 chr11 61659527 61659606 -60184250 - MLT1A LTR MaLR -16 374 302 4 1055 1121 196 19 5 chr11 61660144 61660354 -60183502 + B3 SINE B2 2 214 -2 4 1055 486 242 110 29 chr11 61661003 61661139 -60182717 + B1_Mur2 SINE Alu 1 147 -2 4 1055 252 313 118 37 chr11 61661173 61661309 -60182547 + B4A SINE B4 98 244 -48 4 1055 531 45 0 0 chr11 61661641 61661707 -60182149 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1055 619 284 0 0 chr11 61661811 61661952 -60181904 + RSINE1 SINE B4 4 144 -21 4 1055 21 0 0 0 chr11 61661968 61661989 -60181867 + AT_rich Low_complexity Low_complexity 1 21 0 4 1055 241 269 103 0 chr11 61663353 61663431 -60180425 - MamRep137 DNA TcMar? -328 116 31 4 1055 234 344 81 56 chr11 61663826 61663925 -60179931 + RSINE1 SINE B4 2 112 -53 4 1055 378 0 0 0 chr11 61663925 61663967 -60179889 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1055 234 344 81 56 chr11 61663967 61664027 -60179829 + RSINE1 SINE B4 113 164 -1 4 1055 259 250 44 9 chr11 61664030 61664143 -60179713 + (CATA)n Simple_repeat Simple_repeat 3 119 0 4 1055 1248 181 0 0 chr11 61664182 61664387 -60179469 - B3 SINE B2 -10 206 2 4 1055 25 31 0 0 chr11 61664400 61664432 -60179424 + AT_rich Low_complexity Low_complexity 1 32 0 4 1055 23 0 0 0 chr11 61664620 61664643 -60179213 + AT_rich Low_complexity Low_complexity 1 23 0 4 1055 630 220 73 36 chr11 61664875 61665040 -60178816 - B3 SINE B2 -16 200 30 4 1055 254 285 164 21 chr11 61665284 61665424 -60178432 + MER103 DNA DNA 3 162 -4 4 1055 865 222 41 50 chr11 61665505 61665723 -60178133 + B3 SINE B2 1 216 0 4 1055 855 125 32 65 chr11 61665761 61665915 -60177941 + B1_Mur4 SINE Alu 2 150 0 4 1055 487 248 250 19 chr11 61666180 61666336 -60177520 + B3A SINE B2 1 192 -6 4 1055 451 202 0 63 chr11 61666343 61666438 -60177418 + PB1D9 SINE Alu 1 89 -31 4 1055 598 212 16 48 chr11 61666447 61666571 -60177285 + B1_Mur1 SINE Alu 29 148 -1 4 1055 21 0 0 0 chr11 61667289 61667310 -60176546 + AT_rich Low_complexity Low_complexity 1 21 0 4 1055 207 96 38 19 chr11 61669259 61669312 -60174544 + CT-rich Low_complexity Low_complexity 2 55 0 4 1055 1221 154 40 5 chr11 61669341 61669543 -60174313 - B3 SINE B2 -5 211 3 4 1055 363 259 76 41 chr11 61669676 61669807 -60174049 - MLT1A1 LTR MaLR -6 402 234 4 1055 234 0 0 0 chr11 61670076 61670102 -60173754 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4 1055 1263 114 5 16 chr11 61670124 61670311 -60173545 - B2_Mm1t SINE B2 -8 185 1 4 1055 396 236 0 11 chr11 61670412 61670502 -60173354 - BC1_Mm scRNA scRNA -63 89 1 4 1055 511 231 51 64 chr11 61670531 61670688 -60173168 - RSINE1 SINE B4 -8 157 3 4 1055 1396 220 78 56 chr11 61670794 61671252 -60172604 + RLTR11A LTR ERVK 30 517 -11 4 1055 559 259 169 30 chr11 61671436 61671738 -60172118 - Lx8 LINE L1 -291 7182 6839 4 1055 276 284 346 0 chr11 61671795 61671922 -60171934 + B3A SINE B2 1 171 -27 4 1055 761 131 14 42 chr11 61672190 61672350 -60171506 + B1_Mus2 SINE Alu 1 150 0 4 1055 342 0 0 0 chr11 61672388 61672426 -60171430 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1055 782 171 7 60 chr11 61672640 61672789 -60171067 + B1_Mus2 SINE Alu 1 141 -6 4 1055 576 0 0 0 chr11 61672792 61672856 -60171000 + (CAAAC)n Simple_repeat Simple_repeat 4 67 0 4 1055 347 150 0 26 chr11 61673114 61673193 -60170663 - B1_Mur2 SINE Alu 0 149 48 4 1055 401 231 55 18 chr11 61673250 61673360 -60170496 + PB1D7 SINE Alu 6 119 -1 4 1055 578 204 18 0 chr11 61673389 61673502 -60170354 - B1_Mur4 SINE Alu -34 116 2 4 1055 276 315 0 0 chr11 61673609 61673682 -60170174 + ID2 SINE ID 5 77 -6 4 1055 210 143 0 0 chr11 61673687 61673722 -60170134 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 4 1055 492 218 11 22 chr11 61673748 61673926 -60169930 + (CATA)n Simple_repeat Simple_repeat 1 176 0 4 1055 326 143 16 0 chr11 61673986 61674049 -60169807 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1055 516 292 150 46 chr11 61674164 61674465 -60169391 + Charlie1a DNA MER1_type 1 336 -1119 4 1055 962 158 204 6 chr11 61674465 61674637 -60169219 - B3 SINE B2 -10 206 1 4 1055 207 0 0 0 chr11 61674643 61674666 -60169190 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1055 516 292 150 46 chr11 61674666 61674723 -60169133 + Charlie1a DNA MER1_type 341 404 -1051 4 1055 531 207 121 0 chr11 61674823 61674939 -60168917 - B3 SINE B2 -86 130 1 4 1055 428 221 139 17 chr11 61675144 61675259 -60168597 - B1_Mur2 SINE Alu -19 130 2 4 1055 236 222 32 0 chr11 61675631 61675694 -60168162 + ID4 SINE ID 1 65 -18 4 1055 279 0 0 0 chr11 61676069 61676100 -60167756 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1055 338 271 47 0 chr11 61676882 61676967 -60166889 - PB1D10 SINE Alu -27 90 2 4 1055 40 18 0 17 chr11 61677689 61677708 -60166148 + AT_rich Low_complexity Low_complexity 1 19 0 4 1055 1173 61 7 0 chr11 61677708 61677855 -60166001 + B1_Mus1 SINE Alu 1 148 0 4 1055 40 18 0 17 chr11 61677855 61677893 -60165963 + AT_rich Low_complexity Low_complexity 1 38 0 4 1055 870 148 0 21 chr11 61678388 61678533 -60165323 - B1_Mur2 SINE Alu -2 147 6 4 1055 37 0 0 0 chr11 61678552 61678589 -60165267 + AT_rich Low_complexity Low_complexity 1 37 0 4 1055 1023 255 112 28 chr11 61678655 61679156 -60164700 - Kanga2_a DNA Tc2 -87 801 259 4 1055 216 0 0 0 chr11 61679176 61679200 -60164656 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1055 1135 62 0 14 chr11 61679685 61679820 -60164036 + B1_Mm SINE Alu 4 138 -9 4 1055 270 0 0 0 chr11 61679820 61679850 -60164006 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1055 493 262 116 0 chr11 61680359 61680523 -60163333 + MER5A DNA MER1_type 1 183 -6 4 1055 585 287 93 10 chr11 61680535 61680739 -60163117 + ID_B1 SINE B4 3 223 -1 4 1055 309 268 58 67 chr11 61680789 61680909 -60162947 - PB1D7 SINE Alu -1 119 1 4 1055 760 114 68 54 chr11 61680941 61681089 -60162767 - B1_Mur4 SINE Alu 0 150 1 4 1055 953 67 104 7 chr11 61681123 61681258 -60162598 - B1_Mus1 SINE Alu 0 148 1 4 1055 204 196 22 0 chr11 61681571 61681617 -60162239 + MIR SINE MIR 216 262 0 5 1055 317 237 26 13 chr11 61682071 61682148 -60161708 - ID4_ SINE ID -4 79 2 5 1055 387 242 126 0 chr11 61682562 61682657 -60161199 - PB1D10 SINE Alu -8 109 3 5 1055 244 267 43 95 chr11 61682563 61682679 -60161177 - MT2B2 LTR ERVL -326 258 149 5 1055 30 27 0 0 chr11 61685172 61685209 -60158647 + AT_rich Low_complexity Low_complexity 1 37 0 5 1055 306 0 0 0 chr11 61685426 61685460 -60158396 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1055 1225 55 146 0 chr11 61686700 61686865 -60156991 - B2_Mm2 SINE B2 -5 190 2 5 1055 1209 55 0 0 chr11 61687051 61687197 -60156659 - B1_Mus1 SINE Alu -1 147 2 5 1055 361 273 199 14 chr11 61687205 61687346 -60156510 - B4A SINE B4 -69 223 57 5 1055 497 144 206 0 chr11 61687452 61687549 -60156307 - B3 SINE B2 -97 119 3 5 1055 309 109 18 5 chr11 61687720 61687785 -60156071 - B1_Mus2 SINE Alu 0 147 57 5 1055 379 149 0 43 chr11 61688087 61688157 -60155699 + polypyrimidine Low_complexity Low_complexity 2 68 0 5 1055 815 124 7 0 chr11 61688157 61688302 -60155554 + (TC)n Simple_repeat Simple_repeat 2 147 0 5 1055 210 302 19 0 chr11 61688399 61688452 -60155404 + ID4 SINE ID 11 64 -19 5 1055 260 327 36 36 chr11 61688557 61688668 -60155188 + PB1D10 SINE Alu 1 111 -6 5 1055 315 303 48 27 chr11 61688733 61688879 -60154977 - B1F1 SINE Alu 0 149 1 5 1055 323 205 25 59 chr11 61688882 61689001 -60154855 - L1MEg LINE L1 -4592 1823 1709 5 1055 212 0 0 35 chr11 61689310 61689339 -60154517 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 5 1055 277 276 176 46 chr11 61689823 61690192 -60153664 - L1MEg LINE L1 -5853 547 131 5 1055 359 253 0 0 chr11 61690361 61690440 -60153416 - B3A SINE B2 -119 79 1 5 1055 441 0 0 0 chr11 61690474 61690523 -60153333 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1055 760 250 42 9 chr11 61690554 61690768 -60153088 + ID_B1 SINE B4 2 222 -2 5 1055 205 171 0 0 chr11 61691911 61691946 -60151910 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 5 1055 366 282 16 86 chr11 61691972 61692100 -60151756 - RSINE1 SINE B4 -35 130 12 5 1055 567 203 60 86 chr11 61692238 61692389 -60151467 + B1_Mus1 SINE Alu 2 148 0 5 1055 609 271 68 12 chr11 61692421 61692582 -60151274 - B3A SINE B2 -26 172 3 5 1055 790 161 29 0 chr11 61693450 61693587 -60150269 - B1_Mur3 SINE Alu -8 141 1 5 1055 630 282 25 6 chr11 61693609 61693766 -60150090 - B3A SINE B2 -36 162 3 5 1055 351 0 0 0 chr11 61693772 61693811 -60150045 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1055 3213 137 17 34 chr11 61694114 61694453 -60149403 + RLTR11A2 LTR ERVK 1 342 -185 5 1055 1391 60 60 0 chr11 61694453 61694636 -60149220 - B2_Mm2 SINE B2 -1 194 1 5 1055 3213 137 17 34 chr11 61694636 61694832 -60149024 + RLTR11A2 LTR ERVK 343 527 0 5 1055 430 186 50 20 chr11 61695073 61695172 -60148684 + MTE2b LTR MaLR 260 361 -18 5 1055 424 171 0 27 chr11 61696135 61696225 -60147631 - B1_Mur1 SINE Alu -24 125 42 5 1055 521 273 79 0 chr11 61696696 61696835 -60147021 + B3 SINE B2 6 155 -61 5 1055 3964 127 68 26 chr11 61697032 61697757 -60146099 + RMER6A LTR ERVK 2 756 0 5 1055 1846 118 49 7 chr11 61697931 61698237 -60145619 + ORR1A2 LTR MaLR 1 319 -8 5 1055 283 321 12 0 chr11 61698627 61698708 -60145148 + ID4_ SINE ID 2 83 0 5 1055 440 292 25 0 chr11 61698922 61699042 -60144814 + B4A SINE B4 1 123 -169 5 1055 422 289 155 41 chr11 61699495 61699740 -60144116 + B4A SINE B4 1 273 -19 5 1055 303 237 61 82 chr11 61700443 61700590 -60143266 + L1M5 LINE L1 4583 4726 -1420 5 1055 180 0 0 0 chr11 61700824 61700844 -60143012 + (G)n Simple_repeat Simple_repeat 1 20 0 5 1055 189 0 0 0 chr11 61700924 61700945 -60142911 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1055 385 146 124 10 chr11 61701203 61701300 -60142556 - PB1D9 SINE Alu 0 120 13 5 1055 609 14 0 0 chr11 61701316 61701386 -60142470 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 5 1055 567 43 0 0 chr11 61701386 61701455 -60142401 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 5 1055 250 59 0 0 chr11 61701455 61701489 -60142367 - B1_Mm SINE Alu -21 126 93 5 1055 261 238 55 77 chr11 61701474 61701565 -60142291 - RLTR25A LTR ERVK -493 610 522 5 1055 851 97 0 0 chr11 61701486 61701610 -60142246 - B1_Mus1 SINE Alu -23 125 2 5 1055 491 189 45 90 chr11 61701610 61701641 -60142215 - B4 SINE B4 -201 91 67 5 1055 270 81 0 0 chr11 61701706 61701743 -60142113 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1055 254 235 0 0 chr11 61701744 61701795 -60142061 - B4A SINE B4 -23 269 219 5 1055 787 174 7 7 chr11 61701860 61701999 -60141857 - RSINE1 SINE B4 -25 140 2 5 1055 243 203 37 148 chr11 61702000 61702081 -60141775 - B4A SINE B4 -62 230 159 5 1055 318 320 37 49 chr11 61702152 61702316 -60141540 + RSINE1 SINE B4 4 165 0 5 1055 640 216 89 7 chr11 61702858 61702993 -60140863 + B1_Mur1 SINE Alu 2 147 -2 5 1055 24 0 0 0 chr11 61703267 61703291 -60140565 + AT_rich Low_complexity Low_complexity 1 24 0 5 1055 415 248 30 97 chr11 61703324 61703458 -60140398 - RSINE1 SINE B4 -3 162 38 5 1055 800 219 14 0 chr11 61703490 61703636 -60140220 - B1_Mur1 SINE Alu -1 148 1 5 1055 216 0 0 0 chr11 61703874 61703898 -60139958 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1055 857 247 85 4 chr11 61704082 61704330 -60139526 - Lx8 LINE L1 -303 7170 6903 5 1055 224 185 19 0 chr11 61704667 61704721 -60139135 + GA-rich Low_complexity Low_complexity 2 56 0 5 1055 644 203 37 8 chr11 61704741 61704875 -60138981 + B1_Mur2 SINE Alu 5 142 -7 5 1055 287 296 113 60 chr11 61705341 61705492 -60138364 + RSINE1 SINE B4 7 165 0 5 1055 904 120 100 0 chr11 61705595 61705745 -60138111 + B2_Mm1t SINE B2 1 165 -28 5 1055 269 133 290 89 chr11 61705805 61705929 -60137927 + B2_Mm2 SINE B2 47 195 0 5 1055 378 252 28 55 chr11 61705981 61706090 -60137766 + B4 SINE B4 27 132 -160 5 1055 734 239 23 35 chr11 61706464 61706637 -60137219 + B4 SINE B4 122 292 0 5 1055 468 235 213 12 chr11 61707338 61707502 -60136354 + B3A SINE B2 2 198 0 5 1055 2312 48 0 23 chr11 61707737 61708038 -60135818 + L1Md_F3 LINE L1 6291 6584 0 5 1055 1185 75 0 0 chr11 61708154 61708301 -60135555 - B1_Mm SINE Alu 0 147 1 5 1055 261 311 17 117 chr11 61708452 61708572 -60135284 - RSINE1 SINE B4 0 165 58 5 1055 244 260 26 0 chr11 61708637 61708714 -60135142 - B4A SINE B4 -77 215 137 5 1055 26 50 0 0 chr11 61708929 61708969 -60134887 + AT_rich Low_complexity Low_complexity 1 40 0 5 1055 727 267 132 10 chr11 61709045 61709249 -60134607 - B4A SINE B4 0 292 64 5 1055 626 145 18 9 chr11 61709260 61709371 -60134485 + PB1D9 SINE Alu 9 120 0 5 1055 907 162 6 11 chr11 61709387 61709568 -60134288 + GA-rich Low_complexity Low_complexity 1 180 0 5 1055 267 333 94 0 chr11 61709834 61709972 -60133884 - MIR SINE MIR -111 151 1 5 1055 727 182 193 0 chr11 61711646 61711827 -60132029 - B3 SINE B2 0 216 1 5 1055 485 284 47 44 chr11 61711942 61712143 -60131713 - B3A SINE B2 -8 208 3 5 1055 376 231 39 0 chr11 61712389 61712467 -60131389 + ID4_ SINE ID 3 83 0 5 1055 227 273 0 29 chr11 61712787 61712855 -60131001 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 5 1055 1498 27 22 0 chr11 61712959 61713142 -60130714 + L1Md_F3 LINE L1 6398 6584 0 5 1055 718 209 129 21 chr11 61713162 61713348 -60130508 - B3 SINE B2 -10 206 1 5 1055 474 132 0 0 chr11 61713409 61713485 -60130371 + (TCC)n Simple_repeat Simple_repeat 2 77 0 5 1055 347 136 106 0 chr11 61713509 61713575 -60130281 - B2_Mm2 SINE B2 -121 74 2 5 1055 2142 258 66 31 chr11 61714584 61715188 -60128668 + Lx8 LINE L1 6222 6846 -627 5 1055 239 0 0 31 chr11 61715189 61715221 -60128635 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5 1055 1109 85 0 0 chr11 61715221 61715374 -60128482 - B2_Mm2 SINE B2 -40 155 3 5 1055 678 221 29 14 chr11 61715419 61715557 -60128299 - B1_Mur1 SINE Alu -4 145 6 5 1055 341 302 81 40 chr11 61715455 61715579 -60128277 - B4A SINE B4 -98 194 66 5 1055 779 290 104 38 chr11 61715580 61715927 -60127929 + Lx8 LINE L1 6901 7270 -203 5 1055 252 0 0 0 chr11 61715991 61716019 -60127837 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 5 1055 306 67 0 0 chr11 61716496 61716541 -60127315 + (ATTG)n Simple_repeat Simple_repeat 1 45 0 5 1055 1128 65 7 0 chr11 61716541 61716695 -60127161 - B2_Mm1a SINE B2 -38 155 1 5 1055 594 310 55 13 chr11 61716695 61716926 -60126930 - B4A SINE B4 -51 241 1 5 1055 1007 223 62 19 chr11 61716928 61717138 -60126718 - ID_B1 SINE B4 -3 221 3 5 1055 420 116 45 73 chr11 61717639 61717745 -60126111 - B1_Mus2 SINE Alu -3 144 1 5 1055 459 259 122 26 chr11 61718469 61718584 -60125272 + RSINE1 SINE B4 3 128 -37 5 1055 350 300 49 21 chr11 61718817 61718960 -60124896 + B3A SINE B2 48 194 -4 5 1055 218 226 38 0 chr11 61719245 61719351 -60124505 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1055 373 250 64 46 chr11 61719462 61719571 -60124285 - B1_Mur1 SINE Alu -1 148 38 5 1055 1102 307 88 50 chr11 61719845 61720342 -60123514 + MER21B LTR ERV1 39 554 -309 5 1055 464 289 56 37 chr11 61720382 61720544 -60123312 + MER21B LTR ERV1 636 800 -63 5 1055 218 274 36 100 chr11 61720607 61720778 -60123078 + L2 LINE L2 1461 1612 -1807 5 1055 1087 189 20 0 chr11 61720778 61720974 -60122882 - B3 SINE B2 -13 203 4 5 1055 218 274 36 100 chr11 61720974 61721053 -60122803 + L2 LINE L2 1613 1694 -1725 5 1055 867 147 0 7 chr11 61721280 61721417 -60122439 - B1_Mur2 SINE Alu -5 144 9 6 1055 420 235 24 40 chr11 61721431 61721555 -60122301 - B2_Mm2 SINE B2 -8 187 66 6 1055 1018 161 110 21 chr11 61721606 61721797 -60122059 - B3 SINE B2 -8 208 1 6 1055 374 224 0 0 chr11 61721887 61721963 -60121893 - B3A SINE B2 -122 76 1 6 1055 211 173 0 37 chr11 61722092 61722146 -60121710 + T-rich Low_complexity Low_complexity 2 53 0 6 1055 1185 61 0 0 chr11 61722150 61722297 -60121559 - B1_Mus1 SINE Alu 0 148 2 6 1055 184 59 59 0 chr11 61722345 61722379 -60121477 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1055 730 238 25 6 chr11 61722646 61722807 -60121049 + B3A SINE B2 1 164 -34 6 1055 414 0 0 0 chr11 61722809 61722855 -60121001 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1055 578 291 44 35 chr11 61722877 61723080 -60120776 + B3 SINE B2 2 206 -10 6 1055 695 200 57 0 chr11 61723098 61723238 -60120618 + B1_Mur1 SINE Alu 2 149 0 6 1055 1875 227 106 52 chr11 61723901 61724043 -60119813 - L1_Mur3 LINE L1 -2504 3376 3235 6 1055 180 0 0 0 chr11 61724043 61724063 -60119793 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 1055 1875 227 106 52 chr11 61724063 61724635 -60119221 - L1_Mur3 LINE L1 -2646 3234 2624 6 1055 784 249 34 19 chr11 61724642 61724847 -60119009 + Lx7 LINE L1 5699 5906 -1790 6 1055 2208 298 51 24 chr11 61724898 61725706 -60118150 + Lx8 LINE L1 6017 6846 -627 6 1055 570 194 95 53 chr11 61726060 61726229 -60117627 + B3 SINE B2 36 211 -5 6 1055 502 251 175 32 chr11 61726407 61726596 -60117260 + B3 SINE B2 1 216 0 6 1055 30 0 0 0 chr11 61726605 61726635 -60117221 + AT_rich Low_complexity Low_complexity 1 30 0 6 1055 26 0 0 0 chr11 61726701 61726727 -60117129 + AT_rich Low_complexity Low_complexity 1 26 0 6 1055 1205 55 0 0 chr11 61726769 61726915 -60116941 - B1_Mus2 SINE Alu 0 147 2 6 1055 231 97 137 14 chr11 61727089 61727162 -60116694 + (TTAAA)n Simple_repeat Simple_repeat 1 82 0 6 1055 730 178 52 7 chr11 61727205 61727341 -60116515 + B1_Mur4 SINE Alu 2 143 -7 6 1055 497 172 50 0 chr11 61727376 61727475 -60116381 + B3 SINE B2 2 105 -111 6 1055 204 40 0 0 chr11 61727645 61727670 -60116186 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 6 1055 267 313 81 0 chr11 61727721 61727820 -60116036 + RSINE1 SINE B4 59 165 0 6 1055 1449 49 22 5 chr11 61729808 61729992 -60113864 - B2_Mm2 SINE B2 -7 188 2 6 1055 21 0 0 0 chr11 61730044 61730065 -60113791 + AT_rich Low_complexity Low_complexity 1 21 0 6 1055 592 223 67 121 chr11 61730095 61730319 -60113537 + B3 SINE B2 4 215 -1 6 1055 352 215 140 0 chr11 61730330 61730423 -60113433 + PB1D9 SINE Alu 13 118 -2 6 1055 1362 98 5 0 chr11 61730477 61730661 -60113195 - B2_Mm2 SINE B2 -9 186 2 6 1055 231 274 116 0 chr11 61730741 61730836 -60113020 + PB1D7 SINE Alu 3 108 -12 6 1055 366 299 0 10 chr11 61731183 61731281 -60112575 - PB1D10 SINE Alu -20 97 1 6 1055 551 277 6 36 chr11 61731324 61731489 -60112367 - RSINE1 SINE B4 -5 160 1 6 1055 585 188 194 0 chr11 61731627 61731787 -60112069 + B3 SINE B2 2 192 -24 6 1055 189 186 23 0 chr11 61732587 61732630 -60111226 + L2 LINE L2 2835 2878 -541 6 1055 1517 69 16 0 chr11 61732751 61732940 -60110916 + B2_Mm2 SINE B2 1 192 -3 6 1055 432 0 0 0 chr11 61733600 61733648 -60110208 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 6 1055 207 0 0 0 chr11 61733682 61733705 -60110151 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1055 1249 21 0 0 chr11 61734495 61734638 -60109218 + B1_Mus2 SINE Alu 2 144 -3 6 1056 759 210 0 14 chr11 61735110 61735255 -60108601 - B1_Mur2 SINE Alu -2 147 5 6 1056 251 355 0 11 chr11 61736562 61736653 -60107203 + MIRm SINE MIR 49 138 -138 6 1056 586 142 177 0 chr11 61737667 61737780 -60106076 - B1_Mus2 SINE Alu -5 142 10 6 1056 841 171 0 44 chr11 61738533 61738716 -60105140 - B2_Mm2 SINE B2 -8 187 13 6 1056 1021 203 15 30 chr11 61738717 61738920 -60104936 + B3 SINE B2 1 200 -16 6 1056 508 324 40 13 chr11 61738959 61739109 -60104747 - RSINE1 SINE B4 -10 155 2 6 1056 189 0 0 0 chr11 61739216 61739237 -60104619 + (CACTG)n Simple_repeat Simple_repeat 4 24 0 6 1056 583 170 12 30 chr11 61739240 61739408 -60104448 + B3 SINE B2 10 216 0 6 1056 378 246 12 22 chr11 61739482 61739598 -60104258 + B4 SINE B4 2 121 -44 6 1056 211 192 132 19 chr11 61739835 61739888 -60103968 + B2_Mm2 SINE B2 3 61 -134 6 1056 627 168 64 0 chr11 61739888 61740013 -60103843 + B1_Mur3 SINE Alu 17 149 0 6 1056 250 277 231 16 chr11 61740036 61740157 -60103699 + B3A SINE B2 27 173 -25 6 1056 231 146 0 24 chr11 61740555 61740597 -60103259 + B4A SINE B4 82 122 -170 6 1056 728 195 20 7 chr11 61740582 61740732 -60103124 + B3 SINE B2 60 211 -5 6 1056 240 35 0 0 chr11 61740814 61740843 -60103013 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1056 368 38 2 0 chr11 61740843 61740896 -60102960 - B1_Mur4 SINE Alu -8 142 59 6 1056 279 353 0 0 chr11 61740960 61741062 -60102794 + PB1D10 SINE Alu 16 117 0 6 1056 733 252 58 19 chr11 61741168 61741374 -60102482 - B3 SINE B2 -1 215 2 6 1056 230 296 148 0 chr11 61741478 61741593 -60102263 + B1F2 SINE Alu 5 136 -13 6 1056 590 231 13 26 chr11 61741699 61741850 -60102006 - RSINE1 SINE B4 -8 157 9 6 1056 180 339 150 24 chr11 61742231 61742358 -60101498 + L2a LINE L2 3279 3421 -5 6 1056 21 57 0 0 chr11 61743512 61743547 -60100309 + GC_rich Low_complexity Low_complexity 1 35 0 6 1056 26 0 0 0 chr11 61743791 61743817 -60100039 + GC_rich Low_complexity Low_complexity 1 26 0 6 1056 399 213 143 32 chr11 61744829 61744955 -60098901 + B1_Mur1 SINE Alu 10 149 0 6 1056 690 24 0 0 chr11 61746248 61746332 -60097524 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1056 1373 231 12 47 chr11 61746391 61746800 -60097056 + RCHARR1 DNA MER1_type 109 503 -471 6 1056 405 0 0 0 chr11 61746800 61746845 -60097011 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1056 1424 212 57 16 chr11 61746852 61747221 -60096635 + RCHARR1 DNA MER1_type 557 940 -34 6 1056 271 260 42 117 chr11 61747228 61747420 -60096436 + ORR1E LTR MaLR 6 186 -193 6 1056 306 311 107 58 chr11 61747407 61747649 -60096207 + ORR1E LTR MaLR 98 351 -8 6 1056 1213 170 141 41 chr11 61747670 61748032 -60095824 + RMER6B LTR ERVK 54 451 -10 6 1056 746 170 7 56 chr11 61748046 61748189 -60095667 + MYSERV6-int LTR ERVK 4 139 -8820 6 1056 5103 122 15 10 chr11 61748193 61748982 -60094874 + MYSERV6-int LTR ERVK 624 1416 -7543 6 1056 8092 94 21 43 chr11 61748978 61749083 -60094773 + MYSERV6-int LTR ERVK 7749 7849 -1110 6 1056 1174 75 0 0 chr11 61749083 61749229 -60094627 + B1_Mus1 SINE Alu 3 148 0 6 1056 8092 94 21 43 chr11 61749229 61749340 -60094516 + MYSERV6-int LTR ERVK 7850 7960 -999 6 1056 4909 53 3 5 chr11 61749340 61749947 -60093909 - L1Md_F2 LINE L1 0 6582 5977 6 1056 955 19 0 0 chr11 61749947 61750054 -60093802 - U6 snRNA snRNA 0 107 1 6 1056 8092 94 21 43 chr11 61750054 61750860 -60092996 + MYSERV6-int LTR ERVK 7961 8759 -200 6 1056 660 48 400 0 chr11 61750860 61750965 -60092891 + B1_Mm SINE Alu 1 147 0 6 1056 8092 94 21 43 chr11 61750965 61751177 -60092679 + MYSERV6-int LTR ERVK 8760 8957 -2 6 1056 1470 163 279 17 chr11 61751181 61751543 -60092313 + RMER6B LTR ERVK 5 461 0 6 1056 373 210 24 36 chr11 61751543 61751627 -60092229 + ORR1D2 LTR MaLR 3 85 -285 6 1056 1267 188 113 0 chr11 61752033 61752289 -60091567 + ORR1D2 LTR MaLR 86 370 0 6 1056 335 85 17 0 chr11 61752390 61752449 -60091407 + RMER4A LTR ERVK 1 60 -406 6 1056 1133 27 7 13 chr11 61752451 61752603 -60091253 + B2_Mm2 SINE B2 3 153 -42 6 1056 531 0 0 0 chr11 61752603 61752662 -60091194 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 1056 2308 161 17 0 chr11 61752662 61753066 -60090790 + RMER4A LTR ERVK 56 466 0 6 1056 920 158 14 0 chr11 61753843 61753989 -60089867 + B1_Mus1 SINE Alu 1 148 0 6 1056 1341 77 5 27 chr11 61754121 61754309 -60089547 + B2_Mm1t SINE B2 1 184 -9 6 1056 505 261 32 48 chr11 61754374 61754398 -60089458 + RSINE1 SINE B4 3 26 -139 6 1056 1579 194 124 17 chr11 61754398 61754745 -60089111 - ORR1C2 LTR MaLR 0 384 1 6 1056 505 261 32 48 chr11 61754745 61754845 -60089011 + RSINE1 SINE B4 27 125 -40 6 1056 255 149 0 0 chr11 61754908 61754955 -60088901 - MTE2b LTR MaLR -4 375 329 6 1056 343 203 0 0 chr11 61754958 61755022 -60088834 + MTD LTR MaLR 3 66 -353 6 1056 264 122 0 0 chr11 61755378 61755419 -60088437 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1056 1228 48 0 0 chr11 61755419 61755565 -60088291 - B1_Mm SINE Alu 0 147 2 6 1056 345 317 59 16 chr11 61755793 61755979 -60087877 - MIRb SINE MIR -59 209 16 6 1056 867 251 14 0 chr11 61756115 61756326 -60087530 + B3 SINE B2 1 214 -2 6 1056 377 275 112 45 chr11 61756814 61757018 -60086838 - MIRb SINE MIR -17 251 34 6 1056 287 283 34 109 chr11 61757023 61757142 -60086714 + MER58A DNA MER1_type 7 116 -108 6 1056 321 330 8 0 chr11 61757178 61757296 -60086560 - MLT1I LTR MaLR -4 407 289 6 1056 266 323 62 97 chr11 61757417 61757561 -60086295 - MLT1I LTR MaLR -272 139 1 6 1056 401 222 48 2 chr11 61757755 61757866 -60085990 - PB1 SINE Alu -91 220 24 6 1056 2167 161 53 19 chr11 61757972 61758440 -60085416 + RMER19A LTR ERVK 187 736 -1 6 1056 459 269 42 8 chr11 61759038 61759158 -60084698 - B1F SINE Alu -15 134 11 6 1056 357 256 0 0 chr11 61759210 61759288 -60084568 + PB1 SINE Alu 36 113 -14 6 1056 207 250 132 0 chr11 61759342 61759410 -60084446 - MIRb SINE MIR -19 249 173 6 1056 1991 307 64 30 chr11 61760443 61761605 -60082251 + Lx7 LINE L1 4321 5521 -359 6 1056 562 294 79 4 chr11 61761614 61761843 -60082013 - L1M2 LINE L1 -1255 4888 4643 6 1056 583 155 0 37 chr11 61761904 61762011 -60081845 + PB1D9 SINE Alu 18 120 0 6 1056 546 269 85 21 chr11 61762044 61762315 -60081541 + Lx7 LINE L1 5625 5907 -1143 6 1056 356 236 0 0 chr11 61762594 61762666 -60081190 - PB1D9 SINE Alu 0 120 49 6 1056 231 250 0 0 chr11 61763056 61763104 -60080752 + G-rich Low_complexity Low_complexity 1 48 0 6 1056 466 283 0 40 chr11 61763139 61763264 -60080592 - PB1D7 SINE Alu 0 120 1 6 1056 278 162 95 0 chr11 61763301 61763406 -60080450 + (TA)n Simple_repeat Simple_repeat 2 116 0 7 1056 21 0 0 0 chr11 61763439 61763460 -60080396 + AT_rich Low_complexity Low_complexity 1 21 0 7 1056 355 214 0 0 chr11 61763592 61763662 -60080194 - MTC LTR MaLR -351 70 1 7 1056 279 173 0 0 chr11 61764581 61764633 -60079223 + (TTG)n Simple_repeat Simple_repeat 3 54 0 7 1056 843 104 112 0 chr11 61764690 61764824 -60079032 - B1_Mur4 SINE Alu 0 150 2 7 1056 644 246 60 56 chr11 61765500 61765750 -60078106 + RLTR18 LTR ERVK 31 281 -335 7 1056 698 163 35 0 chr11 61765787 61765928 -60077928 + RLTR28B LTR ERVL 3 148 -333 7 1056 229 125 0 59 chr11 61765939 61765990 -60077866 + RLTR28B LTR ERVL 461 508 -16 7 1056 390 284 92 70 chr11 61766029 61766246 -60077610 + RLTR18B LTR ERVK 184 407 -105 7 1056 342 0 0 0 chr11 61766246 61766284 -60077572 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1056 1178 68 0 31 chr11 61766448 61766709 -60077147 + (CAACC)n Simple_repeat Simple_repeat 1 252 0 7 1056 530 274 31 25 chr11 61766719 61766880 -60076976 + RSINE1 SINE B4 3 164 -1 7 1056 341 283 75 56 chr11 61767024 61767113 -60076743 + B4 SINE B4 2 89 -203 7 1056 296 64 0 21 chr11 61767113 61767161 -60076695 + (CAACC)n Simple_repeat Simple_repeat 2 48 0 7 1056 341 283 75 56 chr11 61767161 61767337 -60076519 + B4 SINE B4 90 272 -20 7 1056 378 0 0 0 chr11 61767342 61767384 -60076472 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1056 622 250 108 60 chr11 61767428 61767726 -60076130 - B4 SINE B4 -15 277 1 7 1056 326 340 133 16 chr11 61767867 61768178 -60075678 - MLT1A0 LTR MaLR -7 358 11 7 1056 456 19 0 0 chr11 61768269 61768322 -60075534 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1056 264 130 0 0 chr11 61768447 61768493 -60075363 + (GGGTG)n Simple_repeat Simple_repeat 3 48 0 7 1056 378 0 0 0 chr11 61769066 61769108 -60074748 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1056 207 312 0 72 chr11 61769169 61769252 -60074604 - MER5A DNA MER1_type -5 184 108 7 1056 293 288 14 0 chr11 61769294 61769367 -60074489 + ID4 SINE ID 9 82 -1 7 1056 203 369 0 0 chr11 61769410 61769475 -60074381 - MER5A DNA MER1_type -119 70 6 7 1056 477 204 149 28 chr11 61769475 61769616 -60074240 - 7SK RNA RNA -85 246 89 7 1056 972 117 0 0 chr11 61769616 61769753 -60074103 + B1_Mur4 SINE Alu 2 138 -12 7 1056 606 175 14 7 chr11 61769767 61769911 -60073945 + GA-rich Low_complexity Low_complexity 2 146 0 7 1056 778 146 37 37 chr11 61769911 61770046 -60073810 + B1_Mur4 SINE Alu 3 137 -13 7 1056 364 176 250 0 chr11 61771435 61771543 -60072313 - B1F1 SINE Alu -13 136 2 7 1056 537 211 46 0 chr11 61771936 61772045 -60071811 + PB1D10 SINE Alu 1 114 -3 7 1056 1201 61 0 0 chr11 61772535 61772683 -60071173 - B1_Mus1 SINE Alu 0 148 1 7 1056 844 137 43 0 chr11 61773644 61773783 -60070073 - B1_Mus2 SINE Alu 0 147 3 7 1056 674 286 101 83 chr11 61773822 61774375 -60069481 - L1MB2 LINE L1 -72 6099 5537 7 1056 803 140 7 0 chr11 61774474 61774610 -60069246 + URR1B DNA MER1_type 89 225 0 7 1056 542 243 7 14 chr11 61775445 61775587 -60068269 - L1ME3A LINE L1 -186 5987 5847 7 1056 520 244 97 23 chr11 61775647 61775823 -60068033 - RMER15 LTR ERVL -40 535 347 7 1056 342 292 35 42 chr11 61776140 61776283 -60067573 - L1ME3A LINE L1 -404 5769 5628 7 1056 428 279 72 24 chr11 61776631 61776756 -60067100 - RSINE1 SINE B4 -31 134 4 7 1056 966 200 54 0 chr11 61776777 61776982 -60066874 - B3 SINE B2 0 216 1 7 1056 480 35 0 0 chr11 61777617 61777675 -60066181 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1056 228 306 0 16 chr11 61778696 61778759 -60065097 - MER77 LTR ERVL -13 594 533 7 1056 666 277 116 39 chr11 61778750 61779035 -60064821 - MER68 LTR ERVL -80 483 177 7 1056 445 198 35 43 chr11 61779041 61779157 -60064699 + MT2B LTR ERVL 146 260 -341 7 1056 496 172 155 54 chr11 61779063 61779192 -60064664 + B1_Mm SINE Alu 6 147 0 7 1056 261 285 36 25 chr11 61779500 61779616 -60064240 - L1MA6 LINE L1 -364 5936 5805 7 1056 504 177 103 8 chr11 61779600 61779729 -60064127 - L1MA6 LINE L1 -180 5667 5535 7 1056 1198 191 10 0 chr11 61779733 61779942 -60063914 - B3 SINE B2 -4 212 2 7 1056 313 287 7 71 chr11 61779964 61780118 -60063738 - L1M3 LINE L1 -579 5610 5467 7 1056 234 224 68 17 chr11 61780126 61780185 -60063671 - MER68 LTR ERVL -499 64 3 7 1056 262 273 0 115 chr11 61780342 61780369 -60063487 + ID SINE ID 7 83 -141 7 1056 278 283 0 0 chr11 61780369 61780429 -60063427 + ID4 SINE ID 23 82 -1 7 1056 1037 133 177 0 chr11 61781741 61781922 -60061934 - B3 SINE B2 0 216 4 7 1056 628 210 0 95 chr11 61781935 61782033 -60061823 - B1_Mur1 SINE Alu -6 143 50 7 1056 2307 79 72 0 chr11 61782033 61782337 -60061519 + ORR1A3 LTR MaLR 1 326 0 7 1056 628 210 0 95 chr11 61782337 61782396 -60061460 - B1_Mur1 SINE Alu -100 49 1 7 1056 315 267 67 0 chr11 61782396 61782471 -60061385 - PB1D7 SINE Alu -40 80 1 7 1056 223 350 133 6 chr11 61782499 61782522 -60061334 - B3 SINE B2 -1 215 12 7 1056 593 280 19 51 chr11 61782522 61782680 -60061176 - RSINE1 SINE B4 0 165 13 7 1056 361 95 32 0 chr11 61782689 61782752 -60061104 + (TA)n Simple_repeat Simple_repeat 1 65 0 7 1056 900 72 16 23 chr11 61782905 61783033 -60060823 - B1_Mur3 SINE Alu 0 149 23 7 1056 377 188 85 93 chr11 61782935 61783064 -60060792 - MT2B LTR ERVL -323 278 151 7 1056 524 301 135 55 chr11 61783074 61783489 -60060367 - L1MA6 LINE L1 -462 5838 5391 7 1056 488 234 71 28 chr11 61783489 61783630 -60060226 + RSINE1 SINE B4 4 150 -15 7 1056 326 285 47 87 chr11 61783698 61783848 -60060008 - L1MA6 LINE L1 -745 5398 5255 7 1056 329 298 28 7 chr11 61783858 61783993 -60059863 + L1M2 LINE L1 4817 5009 -1134 7 1056 914 158 7 0 chr11 61784016 61784155 -60059701 - B1_Mur1 SINE Alu -8 141 2 7 1056 649 184 9 0 chr11 61784248 61784357 -60059499 + B1_Mur2 SINE Alu 26 135 -14 7 1056 400 143 167 52 chr11 61784392 61784488 -60059368 + L1M2 LINE L1 5152 5258 -885 7 1056 195 220 0 0 chr11 61784807 61784857 -60058999 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1056 577 222 22 60 chr11 61784857 61784991 -60058865 - B1F SINE Alu -15 134 6 7 1056 225 304 18 97 chr11 61785293 61785406 -60058450 + MER2B DNA MER2_type 1 104 -232 7 1056 226 306 112 0 chr11 61785421 61785519 -60058337 + MER2 DNA MER2_type 91 199 -146 7 1056 478 81 33 65 chr11 61785796 61785888 -60057968 - L1Md_F2 LINE L1 0 6582 6494 7 1056 781 139 225 12 chr11 61785974 61786134 -60057722 - B2_Mm2 SINE B2 0 195 2 7 1056 1206 102 0 0 chr11 61787067 61787243 -60056613 + (TCCCC)n Simple_repeat Simple_repeat 3 178 0 7 1056 414 0 0 0 chr11 61787243 61787289 -60056567 + (TCC)n Simple_repeat Simple_repeat 3 48 0 7 1056 912 119 6 12 chr11 61788111 61788272 -60055584 + (TCC)n Simple_repeat Simple_repeat 3 162 0 7 1056 629 230 24 0 chr11 61788277 61788403 -60055453 - B1_Mur1 SINE Alu -18 131 3 7 1056 299 285 74 74 chr11 61788405 61788553 -60055303 + LTR33A LTR ERVL 325 472 -48 7 1056 1195 9 33 9 chr11 61788660 61788876 -60054980 + (TG)n Simple_repeat Simple_repeat 1 221 0 7 1056 380 225 0 27 chr11 61788877 61788950 -60054906 + RLTR20A2 LTR ERVK 491 561 -17 7 1056 682 297 4 143 chr11 61788982 61788999 -60054857 - B4A SINE B4 0 292 277 7 1056 330 45 0 0 chr11 61788999 61789043 -60054813 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1056 682 297 4 133 chr11 61789043 61789287 -60054569 - B4A SINE B4 -16 276 66 7 1056 675 294 75 60 chr11 61789294 61789473 -60054383 - B3 SINE B2 -12 204 20 7 1056 2472 68 12 9 chr11 61789473 61789797 -60054059 + ORR1A2 LTR MaLR 3 327 0 7 1056 675 294 75 60 chr11 61789797 61789816 -60054040 - B3 SINE B2 -197 19 3 7 1056 384 276 11 0 chr11 61789825 61789912 -60053944 - B4 SINE B4 -204 88 1 7 1056 242 216 35 26 chr11 61789918 61790032 -60053824 + CT-rich Low_complexity Low_complexity 3 117 0 7 1056 496 299 42 6 chr11 61790248 61790416 -60053440 + MLT1C LTR MaLR 293 466 -1 7 1056 693 324 114 50 chr11 61790417 61790979 -60052877 - L1MB8 LINE L1 -177 6001 5440 7 1056 344 291 53 26 chr11 61790979 61791092 -60052764 - PB1D10 SINE Alu -1 116 1 7 1056 693 229 184 29 chr11 61791092 61791316 -60052540 - L1MB8 LINE L1 -739 5439 5167 7 1056 650 211 38 38 chr11 61791344 61791477 -60052379 - B1_Mur1 SINE Alu -7 142 10 7 1056 206 250 0 0 chr11 61791783 61791831 -60052025 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 7 1056 577 300 53 62 chr11 61791831 61792058 -60051798 - B4A SINE B4 0 292 68 7 1056 817 211 70 0 chr11 61793192 61793348 -60050508 - B3 SINE B2 0 216 50 7 1056 716 274 96 50 chr11 61793452 61793871 -60049985 - L1MDa LINE L1 -2216 4321 3884 7 1056 236 205 115 0 chr11 61794115 61794193 -60049663 - L1MDa LINE L1 -3764 2773 2687 7 1056 232 204 124 71 chr11 61794591 61794760 -60049096 - L1MDa LINE L1 -4030 2603 2426 7 1056 669 156 16 16 chr11 61794765 61794889 -60048967 - B1_Mur2 SINE Alu 0 149 26 7 1056 673 246 15 0 chr11 61794906 61795036 -60048820 - B3 SINE B2 -9 207 76 7 1056 281 238 0 31 chr11 61795036 61795101 -60048755 + RMER13A LTR ERVK 1 63 -797 7 1056 1065 249 59 65 chr11 61795101 61795441 -60048415 + RLTR26 LTR ERVK 137 474 -168 7 1056 495 175 0 12 chr11 61795524 61795605 -60048251 - B3 SINE B2 -135 81 2 7 1056 330 301 224 14 chr11 61795615 61795905 -60047951 - L1MDa LINE L1 -4244 2389 2039 7 1056 475 231 33 33 chr11 61795989 61796141 -60047715 - L1MDa LINE L1 -4630 2003 1852 7 1056 1419 48 287 0 chr11 61796140 61796349 -60047507 + L1Md_T LINE L1 6314 6582 0 7 1056 306 271 94 68 chr11 61796486 61796826 -60047030 - L1MDa LINE L1 -5000 1633 1285 7 1056 560 214 96 37 chr11 61796854 61796868 -60046988 - B1_Mur1 SINE Alu 0 149 140 7 1056 207 0 0 0 chr11 61796868 61796891 -60046965 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1056 560 214 96 37 chr11 61796891 61797012 -60046844 - B1_Mur1 SINE Alu -10 139 6 7 1056 315 272 108 54 chr11 61797012 61797071 -60046785 - ID_B1 SINE B4 -75 217 39 7 1056 295 278 142 31 chr11 61797481 61797741 -60046115 - L1MC4 LINE L1 -861 7181 6893 7 1056 211 286 0 0 chr11 61798055 61798104 -60045752 + B1F1 SINE Alu 16 64 -85 7 1056 1016 151 15 0 chr11 61798229 61798494 -60045362 + CT-rich Low_complexity Low_complexity 1 269 0 7 1056 210 219 0 0 chr11 61799387 61799451 -60044405 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1056 352 290 56 42 chr11 61799485 61799701 -60044155 + RMER12 LTR ERVK 770 988 -334 7 1056 203 308 0 30 chr11 61799705 61799772 -60044084 + (TATG)n Simple_repeat Simple_repeat 3 67 0 7 1056 294 252 93 9 chr11 61800032 61800140 -60043716 + PB1 SINE Alu 2 118 -9 7 1056 677 252 25 6 chr11 61800257 61800417 -60043439 - RSINE1 SINE B4 0 165 3 8 1056 180 77 0 0 chr11 61800547 61800573 -60043283 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 8 1056 705 179 41 0 chr11 61800742 61800865 -60042991 - B1_Mur2 SINE Alu 0 149 22 8 1056 442 219 127 94 chr11 61800743 61800924 -60042932 - B4A SINE B4 -67 225 38 8 1056 384 22 0 0 chr11 61801306 61801351 -60042505 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1056 598 257 68 162 chr11 61801351 61801443 -60042413 - B4A SINE B4 -8 284 226 8 1056 859 233 50 0 chr11 61801443 61801645 -60042211 - B3 SINE B2 -4 212 1 8 1056 598 257 68 162 chr11 61801645 61801862 -60041994 - B4A SINE B4 -67 225 2 8 1056 1849 138 6 73 chr11 61801868 61802196 -60041660 - ORR1C1 LTR MaLR -2 376 71 8 1056 772 188 14 14 chr11 61802237 61802383 -60041473 - B1_Mur1 SINE Alu -2 147 2 8 1056 266 264 129 70 chr11 61802383 61802441 -60041415 - MT2B2 LTR ERVL -427 157 90 8 1056 222 303 15 15 chr11 61802495 61802562 -60041294 - L2a LINE L2 0 3426 3360 8 1056 268 282 134 17 chr11 61802792 61802911 -60040945 + MIR SINE MIR 58 190 -72 8 1056 409 248 112 0 chr11 61802914 61803039 -60040817 + RSINE1 SINE B4 3 141 -24 8 1056 272 235 102 56 chr11 61803618 61803726 -60040130 + MLT1E LTR MaLR 153 265 -304 8 1056 393 247 93 44 chr11 61803743 61803815 -60040041 - MT2A LTR ERVL 0 533 460 8 1056 333 0 0 0 chr11 61803815 61803852 -60040004 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1056 393 247 93 44 chr11 61803852 61803961 -60039895 - MT2A LTR ERVL -74 459 343 8 1056 1430 87 0 10 chr11 61803970 61804167 -60039689 + B2_Mm2 SINE B2 1 195 0 8 1056 630 299 118 81 chr11 61804178 61804418 -60039438 - MT2A LTR ERVL -111 422 166 8 1056 924 171 28 28 chr11 61804418 61804598 -60039258 - B2_Mm2 SINE B2 -14 181 2 8 1056 630 299 118 81 chr11 61804598 61804764 -60039092 - MT2A LTR ERVL -368 165 1 8 1056 298 318 175 23 chr11 61804809 61804986 -60038870 + MLT1E LTR MaLR 421 653 0 8 1056 279 0 0 0 chr11 61806037 61806068 -60037788 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1056 2112 216 60 2 chr11 61806072 61806508 -60037348 - MT2A LTR ERVL -72 461 1 8 1056 2933 180 143 20 chr11 61806831 61807487 -60036369 - RMER19A LTR ERVK 0 737 1 8 1056 1044 151 76 0 chr11 61807751 61807936 -60035920 - ORR1D2 LTR MaLR 0 370 172 8 1056 882 136 0 0 chr11 61808181 61808483 -60035373 + (TG)n Simple_repeat Simple_repeat 1 302 0 8 1056 391 230 195 13 chr11 61808497 61808651 -60035205 - B3A SINE B2 -16 182 1 8 1056 4254 81 23 0 chr11 61808702 61809273 -60034583 + MT2B2 LTR ERVL 1 584 0 8 1056 772 233 47 60 chr11 61809659 61809874 -60033982 + B3 SINE B2 3 214 -2 8 1056 374 0 22 0 chr11 61809975 61810021 -60033835 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1056 379 281 10 0 chr11 61810046 61810142 -60033714 - B1F SINE Alu -16 133 37 8 1056 392 225 0 33 chr11 61810142 61810326 -60033530 + CT-rich Low_complexity Low_complexity 2 179 0 8 1056 211 320 33 0 chr11 61810257 61810379 -60033477 + (CAGCT)n Simple_repeat Simple_repeat 4 129 0 8 1056 213 213 131 0 chr11 61810392 61810453 -60033403 - PB1D7 SINE Alu -34 86 18 8 1056 360 0 0 0 chr11 61810525 61810565 -60033291 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1056 312 365 62 7 chr11 61810568 61810714 -60033142 - L1M4 LINE L1 -2668 3478 3325 8 1056 305 203 6 0 chr11 61810973 61811029 -60032827 + PB1D10 SINE Alu 17 75 -74 8 1056 229 259 0 129 chr11 61810974 61811067 -60032789 + B4A SINE B4 103 183 -109 8 1056 241 186 16 48 chr11 61812463 61812525 -60031331 + MTEa LTR MaLR 303 362 -17 8 1056 961 152 161 10 chr11 61812591 61812784 -60031072 + URR1A DNA MER1_type 3 224 -2 8 1056 4663 125 98 62 chr11 61813254 61814125 -60029731 + RMER19B LTR ERVK 1 902 0 8 1056 1027 100 7 7 chr11 61814521 61814662 -60029194 + B1_Mur3 SINE Alu 5 145 -4 8 1056 1253 98 55 0 chr11 61814819 61815002 -60028854 - B2_Mm2 SINE B2 -2 193 1 8 1056 702 156 148 0 chr11 61815007 61815135 -60028721 - B1_Mus1 SINE Alu -1 147 1 8 1056 1416 81 5 0 chr11 61815241 61815426 -60028430 - B2_Mm1t SINE B2 -7 186 1 8 1056 480 260 69 23 chr11 61815630 61815760 -60028096 + B3 SINE B2 79 214 -2 8 1056 234 0 0 0 chr11 61816021 61816047 -60027809 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1056 492 228 0 0 chr11 61816047 61816139 -60027717 - B1_Mur4 SINE Alu -10 140 49 8 1056 349 255 136 41 chr11 61816206 61816353 -60027503 - RSINE1 SINE B4 -2 163 3 8 1056 274 209 0 56 chr11 61816445 61816516 -60027340 - B4 SINE B4 -176 116 50 8 1056 717 282 60 73 chr11 61816517 61816900 -60026956 - L1M4 LINE L1 -2019 4127 3750 8 1056 387 256 13 0 chr11 61816938 61817016 -60026840 - ID4_ SINE ID -2 81 3 8 1056 230 376 0 84 chr11 61817046 61817165 -60026691 + MLT1A1 LTR MaLR 46 154 -254 8 1056 314 317 24 47 chr11 61817278 61817447 -60026409 - RSINE1 SINE B4 0 165 1 8 1056 231 229 71 0 chr11 61817588 61817658 -60026198 + MTE2a LTR MaLR 279 353 -26 8 1056 718 291 107 50 chr11 61817735 61818053 -60025803 - ORR1E LTR MaLR -11 348 13 8 1056 477 218 199 41 chr11 61818372 61818568 -60025288 - Arthur1C DNA Tip100 -77 286 60 8 1056 185 0 40 0 chr11 61818789 61818814 -60025042 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 8 1056 469 141 0 0 chr11 61820464 61820535 -60023321 - B1_Mus2 SINE Alu 0 147 77 8 1056 472 196 112 10 chr11 61820574 61820672 -60023184 + PB1D9 SINE Alu 3 110 -10 8 1056 214 194 28 0 chr11 61820746 61820818 -60023038 + CT-rich Low_complexity Low_complexity 4 77 0 8 1056 284 256 20 82 chr11 61821239 61821337 -60022519 + MTEa LTR MaLR 1 92 -287 8 1056 254 278 37 67 chr11 61821337 61821374 -60022482 + MLT2B4 LTR ERVL 1 131 -425 8 1056 280 225 99 0 chr11 61821542 61821613 -60022243 + MTEa LTR MaLR 280 357 -22 8 1056 316 360 77 22 chr11 61821700 61821882 -60021974 + B3A SINE B2 1 192 -6 8 1056 30 27 0 0 chr11 61821952 61821989 -60021867 + AT_rich Low_complexity Low_complexity 1 37 0 8 1056 279 0 0 0 chr11 61822209 61822240 -60021616 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1056 342 0 0 0 chr11 61822240 61822277 -60021579 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1056 407 288 80 0 chr11 61822279 61822404 -60021452 - B3A SINE B2 -36 162 28 8 1056 938 58 0 0 chr11 61822445 61822566 -60021290 - B1_Mus1 SINE Alu 0 148 28 8 1056 396 0 0 0 chr11 61822592 61822636 -60021220 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1056 1526 55 0 0 chr11 61822759 61822942 -60020914 - Lx3C LINE L1 -595 6381 6199 8 1056 294 206 0 0 chr11 61823072 61823135 -60020721 + (CATA)n Simple_repeat Simple_repeat 2 64 0 8 1056 307 207 16 0 chr11 61823490 61823558 -60020298 + B1F1 SINE Alu 49 149 0 8 1056 647 230 189 11 chr11 61823639 61823819 -60020037 - B4A SINE B4 -79 213 2 8 1056 351 281 64 43 chr11 61824438 61824579 -60019277 - MLT1A1 LTR MaLR -2 406 263 8 1056 254 115 19 0 chr11 61824771 61824823 -60019033 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 8 1056 636 218 24 0 chr11 61824851 61824975 -60018881 - B1_Mur1 SINE Alu 0 149 23 8 1056 719 266 183 39 chr11 61825098 61825518 -60018338 - Lx8 LINE L1 -260 7213 6734 8 1056 2488 61 10 0 chr11 61825830 61826143 -60017713 - L1Md_T LINE L1 -2 6580 6265 8 1056 272 323 61 38 chr11 61827212 61827344 -60016512 + L2b LINE L2 3240 3374 -1 8 1056 563 164 105 9 chr11 61827371 61827476 -60016380 + B1_Mur4 SINE Alu 23 137 -13 8 1056 285 29 0 0 chr11 61827477 61827511 -60016345 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 8 1056 260 238 37 9 chr11 61827613 61827719 -60016137 - L1MD LINE L1 -904 5242 5135 8 1056 241 141 37 49 chr11 61827725 61827807 -60016049 + T-rich Low_complexity Low_complexity 3 83 0 8 1056 343 197 88 50 chr11 61827809 61827889 -60015967 - ID_B1 SINE B4 0 224 142 8 1056 259 286 58 23 chr11 61827813 61827899 -60015957 - PB1D10 SINE Alu 0 117 29 8 1056 305 333 33 16 chr11 61827950 61828072 -60015784 - L1M5 LINE L1 -1046 5100 4977 8 1056 232 290 29 99 chr11 61830056 61830084 -60013772 + MLT2B5 LTR ERVL 375 410 -145 8 1056 259 274 0 0 chr11 61830084 61830135 -60013721 + B1F2 SINE Alu 1 51 -98 8 1056 232 290 29 99 chr11 61830135 61830228 -60013628 + MLT2B5 LTR ERVL 411 534 -21 8 1056 387 105 0 0 chr11 61830276 61830333 -60013523 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 8 1056 568 168 20 10 chr11 61830333 61830435 -60013421 - PB1D9 SINE Alu -12 108 6 8 1056 278 208 0 0 chr11 61830443 61830496 -60013360 + B1F SINE Alu 91 143 -6 8 1056 252 0 0 0 chr11 61830958 61830986 -60012870 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1056 1046 124 0 17 chr11 61831320 61831501 -60012355 + (TCC)n Simple_repeat Simple_repeat 2 179 0 8 1056 1013 143 3 16 chr11 61831501 61831865 -60011991 + CT-rich Low_complexity Low_complexity 1 358 0 8 1056 788 206 19 19 chr11 61831865 61832041 -60011815 - B1_Mur2 SINE Alu -4 307 1 8 1056 706 238 18 53 chr11 61832526 61832695 -60011161 + RSINE1 SINE B4 3 165 0 8 1056 1316 99 15 40 chr11 61832817 61833016 -60010840 - B2_Mm2 SINE B2 -1 194 1 8 1056 537 297 19 13 chr11 61833053 61833210 -60010646 - RSINE1 SINE B4 0 165 8 8 1056 1512 53 16 16 chr11 61833790 61833983 -60009873 - B2_Mm2 SINE B2 -1 194 2 8 1056 332 329 0 0 chr11 61834272 61834442 -60009414 + (CAG)n Simple_repeat Simple_repeat 2 171 0 8 1056 378 0 0 0 chr11 61834701 61834743 -60009113 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1056 278 242 0 57 chr11 61834748 61834818 -60009038 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 8 1056 245 293 93 87 chr11 61834842 61834886 -60008970 - MTEb LTR MaLR -13 361 317 9 1056 2499 133 39 15 chr11 61834886 61835297 -60008559 + MTC LTR MaLR 1 421 0 9 1056 269 294 65 108 chr11 61835297 61835542 -60008314 - MTEb LTR MaLR -58 316 63 9 1056 374 231 13 0 chr11 61835575 61835653 -60008203 - ID4_ SINE ID -4 79 1 9 1056 216 343 118 0 chr11 61835740 61835909 -60007947 + MIRb SINE MIR 75 263 -5 9 1056 231 36 0 0 chr11 61836483 61836511 -60007345 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 9 1056 258 308 65 21 chr11 61837604 61837697 -60006159 - MER20 DNA MER1_type -18 201 105 9 1056 223 272 100 7 chr11 61838973 61839057 -60004799 + MIRb SINE MIR 32 126 -142 9 1056 543 321 189 7 chr11 61839065 61839372 -60004484 - MLT1A0 LTR MaLR 0 365 3 9 1056 186 71 0 0 chr11 61841217 61841245 -60002611 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1056 207 0 0 0 chr11 61841940 61841963 -60001893 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1056 812 150 20 79 chr11 61841963 61842106 -60001750 - B1_Mur3 SINE Alu -9 140 7 9 1056 257 345 49 35 chr11 61842009 61842153 -60001703 - RLTR25A LTR ERVK -527 576 431 9 1056 288 0 0 0 chr11 61842184 61842216 -60001640 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1056 1188 75 0 0 chr11 61842373 61842520 -60001336 + B1_Mus1 SINE Alu 1 147 -1 9 1056 231 339 35 18 chr11 61843362 61843476 -60000380 - MER20B DNA MER1_type -50 733 618 9 1056 290 354 119 44 chr11 61843574 61843917 -59999939 - MER20B DNA MER1_type -381 402 34 9 1056 238 310 139 63 chr11 61844247 61844406 -59999450 + L2 LINE L2 2744 2933 -486 9 1056 276 30 0 0 chr11 61844406 61844439 -59999417 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9 1056 238 310 139 63 chr11 61844439 61844582 -59999274 + L2 LINE L2 2934 3068 -351 9 1056 336 24 0 0 chr11 61845158 61845199 -59998657 - B1_Mur2 SINE Alu -9 140 100 9 1056 312 27 0 0 chr11 61845199 61845236 -59998620 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1056 333 0 0 0 chr11 61845236 61845272 -59998584 + (GA)n Simple_repeat Simple_repeat 1 37 0 9 1056 892 214 300 6 chr11 61845272 61845593 -59998263 - MT2A LTR ERVL -76 457 1 9 1056 437 54 0 0 chr11 61845593 61845649 -59998207 - MERVL_2A-int LTR ERVL 0 5761 5706 9 1056 316 214 0 28 chr11 61845649 61845721 -59998135 - ORR1A3-int LTR MaLR -1324 639 570 9 1056 6702 152 113 24 chr11 61845732 61847169 -59996687 - MERVL_2A-int LTR ERVL -71 5690 4126 9 1056 757 189 0 29 chr11 61847199 61847335 -59996521 - MT2A LTR ERVL -401 132 1 9 1056 613 184 126 16 chr11 61847385 61847512 -59996344 + B1_Mur2 SINE Alu 1 141 -8 9 1056 349 187 28 18 chr11 61847787 61847896 -59995960 - Lx9 LINE L1 -15 7629 7520 9 1056 297 0 0 0 chr11 61847904 61847937 -59995919 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1056 1325 227 30 21 chr11 61847939 61848272 -59995584 - Lx9 LINE L1 -171 7473 7138 9 1056 694 157 0 0 chr11 61848276 61848395 -59995461 - Lx9 LINE L1 -594 7050 6945 9 1056 2134 115 113 20 chr11 61848395 61848768 -59995088 - ORR1B1 LTR MaLR 0 394 1 9 1056 2127 233 102 20 chr11 61848769 61849317 -59994539 - Lx9 LINE L1 -711 6933 6341 9 1056 264 30 0 0 chr11 61849320 61849353 -59994503 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1056 1154 170 282 40 chr11 61849395 61849696 -59994160 + ORR1D1 LTR MaLR 1 374 0 9 1056 1637 132 167 10 chr11 61849704 61850003 -59993853 - ORR1B1 LTR MaLR -8 386 41 9 1056 250 163 0 0 chr11 61850010 61850059 -59993797 - Lx9 LINE L1 -1424 6220 6172 9 1056 398 125 27 40 chr11 61850166 61850241 -59993615 - Lx2A LINE L1 -1127 5881 5808 9 1056 623 271 131 31 chr11 61851077 61851336 -59992520 - MER2 DNA MER2_type -31 314 30 9 1056 1062 126 0 0 chr11 61851699 61851866 -59991990 + (TCCC)n Simple_repeat Simple_repeat 3 169 0 9 1056 715 144 120 0 chr11 61851872 61851997 -59991859 - B1_Mur2 SINE Alu -1 148 9 9 1056 23 0 0 0 chr11 61852001 61852024 -59991832 + AT_rich Low_complexity Low_complexity 1 23 0 9 1056 564 181 102 17 chr11 61852057 61852175 -59991681 - RSINE1 SINE B4 -35 130 3 9 1056 827 207 131 41 chr11 61853064 61853331 -59990525 - B4A SINE B4 0 292 2 9 1056 264 30 0 0 chr11 61853376 61853409 -59990447 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1056 436 297 198 19 chr11 61853486 61853710 -59990146 + MTEb LTR MaLR 50 313 -66 9 1056 539 274 0 179 chr11 61853706 61853848 -59990008 - MTD LTR MaLR -129 290 173 9 1056 780 186 218 11 chr11 61853848 61854027 -59989829 + B3 SINE B2 1 216 0 9 1056 539 274 0 179 chr11 61854027 61854102 -59989754 - MTD LTR MaLR -247 172 112 9 1056 6263 17 0 0 chr11 61854104 61854807 -59989049 + L1Md_A LINE L1 4884 5586 -297 9 1056 8252 36 23 0 chr11 61854807 61855781 -59988075 + L1Md_A LINE L1 5587 6582 0 9 1056 280 242 73 29 chr11 61855860 61855928 -59987928 + B4 SINE B4 164 234 -58 9 1056 288 114 237 18 chr11 61855982 61856058 -59987798 + MTE-int LTR MaLR 1343 1455 -125 9 1056 441 66 0 0 chr11 61856770 61856831 -59987025 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1056 371 312 14 136 chr11 61857151 61857335 -59986521 + L1M5 LINE L1 3661 3828 -2318 9 1056 1054 187 66 0 chr11 61857335 61857533 -59986323 + B3 SINE B2 1 211 -5 9 1056 371 312 14 136 chr11 61857533 61857700 -59986156 + L1M5 LINE L1 3829 3969 -2177 9 1056 328 241 51 0 chr11 61857869 61857948 -59985908 + PB1D10 SINE Alu 34 116 -1 9 1056 357 207 103 0 chr11 61858313 61858400 -59985456 + MER20 DNA MER1_type 64 159 -60 9 1056 308 263 13 0 chr11 61858589 61858665 -59985191 + ID4 SINE ID 5 81 -2 9 1056 983 223 21 0 chr11 61858767 61858960 -59984896 + B4A SINE B4 25 221 -71 9 1056 180 143 0 0 chr11 61858962 61859004 -59984852 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1056 817 245 88 0 chr11 61859235 61859427 -59984429 + B3 SINE B2 4 212 -4 9 1056 608 229 60 66 chr11 61859720 61859902 -59983954 - B4A SINE B4 -97 195 15 9 1056 378 0 0 0 chr11 61860069 61860111 -59983745 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1056 270 0 0 0 chr11 61860111 61860140 -59983716 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 1056 368 183 24 0 chr11 61860419 61860501 -59983355 + (TATG)n Simple_repeat Simple_repeat 1 84 0 9 1056 804 241 76 95 chr11 61860548 61860810 -59983046 + MTEa LTR MaLR 123 379 0 9 1056 243 309 175 0 chr11 61861579 61861676 -59982180 - L2a LINE L2 0 3426 3313 9 1056 340 302 148 19 chr11 61861838 61862054 -59981802 - L2a LINE L2 -556 2863 2620 9 1056 443 264 56 21 chr11 61862157 61862300 -59981556 - RSINE1 SINE B4 -6 159 12 9 1056 1224 48 7 0 chr11 61862325 61862471 -59981385 - B1_Mus2 SINE Alu 0 147 1 9 1056 465 255 166 21 chr11 61862621 61862905 -59980951 - L1MB3 LINE L1 -83 6100 5776 9 1056 417 194 78 48 chr11 61863317 61863420 -59980436 + B1_Mur1 SINE Alu 17 122 -27 9 1056 836 205 10 106 chr11 61864569 61864776 -59979080 + MTE2b LTR MaLR 28 214 -165 9 1056 25 0 0 0 chr11 61864786 61864811 -59979045 + AT_rich Low_complexity Low_complexity 1 25 0 9 1056 329 226 58 23 chr11 61864872 61864958 -59978898 - B4A SINE B4 -10 282 194 9 1056 439 274 45 19 chr11 61865266 61865422 -59978434 - B4A SINE B4 -131 161 2 9 1056 303 244 0 58 chr11 61865422 61865500 -59978356 + MTE2b LTR MaLR 178 250 -109 9 1056 295 288 117 0 chr11 61865526 61865689 -59978167 - L1MB1 LINE L1 -170 5998 5817 9 16 1884 122 85 7 chr11 61865769 61866074 -59977782 - ORR1A4 LTR MaLR 0 329 1 9 1057 370 312 105 6 chr11 61866146 61866317 -59977539 - MER20B DNA MER1_type -8 775 588 9 1057 515 199 52 30 chr11 61866679 61866814 -59977042 - Zaphod DNA Tip100 -2678 1353 1216 9 1057 31 0 0 0 chr11 61866823 61866854 -59977002 + AT_rich Low_complexity Low_complexity 1 31 0 9 1057 387 222 67 0 chr11 61866857 61866947 -59976909 - B1F1 SINE Alu -5 144 49 9 1057 1358 275 122 81 chr11 61867242 61867748 -59976108 - L1MD1 LINE L1 -13 6229 5681 9 1057 303 301 0 0 chr11 61867748 61867821 -59976035 - ID4 SINE ID -9 74 2 9 1057 1358 275 122 81 chr11 61867821 61868043 -59975813 - L1MD1 LINE L1 -562 5680 5480 9 1057 763 212 127 41 chr11 61868043 61868240 -59975616 - B3 SINE B2 -2 214 1 9 1057 1358 276 109 76 chr11 61868240 61868478 -59975378 - L1MD1 LINE L1 -763 5479 5224 9 1057 544 224 44 15 chr11 61868614 61868750 -59975106 - B1F SINE Alu -8 141 2 9 1057 744 259 160 119 chr11 61868755 61869413 -59974443 - L1MD1 LINE L1 -975 5171 4438 9 1057 582 272 7 20 chr11 61869413 61869563 -59974293 + RSINE1 SINE B4 4 151 -14 9 1057 189 0 0 0 chr11 61869564 61869585 -59974271 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1057 744 259 160 119 chr11 61869585 61870061 -59973795 - L1MD1 LINE L1 -1709 4437 3988 9 1057 522 280 30 0 chr11 61870078 61870210 -59973646 - B1F1 SINE Alu 0 149 14 9 1057 428 322 67 19 chr11 61870212 61870421 -59973435 - L1MC4 LINE L1 -4982 1233 1015 9 1057 1046 88 0 33 chr11 61870428 61870581 -59973275 - B1_Mus1 SINE Alu 0 148 1 9 1057 497 209 11 0 chr11 61870583 61870674 -59973182 - B1_Mur1 SINE Alu -1 148 57 9 1057 391 212 192 17 chr11 61870724 61870844 -59973012 - L1MD1 LINE L1 -2259 3887 3747 9 1057 1211 185 5 19 chr11 61870848 61871063 -59972793 - B3 SINE B2 0 216 5 9 1057 234 236 141 89 chr11 61871102 61871237 -59972619 + B1F1 SINE Alu 1 142 -7 9 1057 745 234 0 7 chr11 61871241 61871387 -59972469 + B1F2 SINE Alu 2 146 -3 9 1057 322 233 38 2 chr11 61871484 61871579 -59972277 - L1MD1 LINE L1 -2534 3612 3516 9 1057 882 234 37 0 chr11 61871617 61871831 -59972025 - ID_B1 SINE B4 0 224 3 9 1057 411 284 79 46 chr11 61871845 61872085 -59971771 - L1MD1 LINE L1 -2645 3501 3254 9 1057 396 196 83 42 chr11 61872117 61872136 -59971720 - L1MD1 LINE L1 -2876 3270 3257 9 1057 495 280 27 34 chr11 61872136 61872284 -59971572 - B1F SINE Alu -2 147 1 9 1057 396 196 83 42 chr11 61872284 61872408 -59971448 - L1MD1 LINE L1 -2890 3256 3121 9 1057 216 0 0 0 chr11 61872562 61872586 -59971270 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1057 384 155 0 53 chr11 61872725 61872800 -59971056 - B3 SINE B2 -1 215 145 9 1057 470 363 125 21 chr11 61872787 61873220 -59970636 - Zaphod DNA Tip100 -3386 645 168 9 1057 204 256 60 12 chr11 61873254 61873420 -59970436 + (TA)n Simple_repeat Simple_repeat 1 174 0 9 1057 207 130 36 36 chr11 61873544 61873600 -59970256 + (TATAA)n Simple_repeat Simple_repeat 3 58 0 9 1057 198 0 0 0 chr11 61873686 61873708 -59970148 + (CTTA)n Simple_repeat Simple_repeat 1 22 0 9 1057 270 329 0 12 chr11 61873786 61873869 -59969987 - ID4_ SINE ID 0 83 2 9 1057 402 290 18 3 chr11 61874127 61874256 -59969600 + L1_Mm LINE L1 5380 5536 -761 9 1057 678 175 7 93 chr11 61874283 61874434 -59969422 + B1_Mur2 SINE Alu 1 138 -11 9 1057 180 77 0 0 chr11 61874435 61874461 -59969395 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1057 362 345 18 24 chr11 61874468 61874637 -59969219 + Lx9 LINE L1 5808 5975 -1669 9 1057 1037 277 68 7 chr11 61874793 61875073 -59968783 + Lx8 LINE L1 6291 6587 -886 9 1057 320 250 10 52 chr11 61876638 61876735 -59967121 + PB1 SINE Alu 23 115 -12 9 1057 228 150 0 0 chr11 61877064 61877106 -59966750 - B1_Mur4 SINE Alu -51 99 56 9 1057 180 306 63 16 chr11 61877292 61877355 -59966501 + MIRc SINE MIR 89 154 -114 1 1057 301 258 91 0 chr11 61877394 61877460 -59966396 + MER2B DNA MER2_type 3 74 -262 1 1057 351 0 0 0 chr11 61877675 61877714 -59966142 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1057 652 301 0 24 chr11 61877719 61877886 -59965970 - B4A SINE B4 -126 166 4 1 1057 314 221 149 9 chr11 61878165 61878279 -59965577 - L1MC1 LINE L1 0 6333 6204 1 1057 701 306 28 12 chr11 61878339 61878590 -59965266 - L1MC1 LINE L1 -234 6099 5845 1 1057 380 221 44 0 chr11 61878590 61878658 -59965198 + PB1D9 SINE Alu 1 71 -49 1 1057 521 144 18 55 chr11 61878663 61878773 -59965083 - RLTR12B LTR ERVK -2 526 421 1 1057 1115 80 0 0 chr11 61878773 61878911 -59964945 + B1_Mus2 SINE Alu 1 138 -9 1 1057 222 37 0 0 chr11 61878911 61878938 -59964918 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1057 194 380 38 0 chr11 61879171 61879250 -59964606 - L2a LINE L2 -37 3389 3308 1 1057 2668 268 74 171 chr11 61879773 61881521 -59962335 - Charlie12 DNA MER1_type -283 2590 1068 1 1057 236 30 0 29 chr11 61881521 61881555 -59962301 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1 1057 2668 268 74 171 chr11 61881555 61881884 -59961972 - Charlie12 DNA MER1_type -1806 1067 715 1 1057 339 302 97 32 chr11 61882385 61882539 -59961317 + B4 SINE B4 60 223 -69 1 1057 563 179 0 89 chr11 61882419 61882542 -59961314 + PB1D9 SINE Alu 7 118 -2 1 1057 579 40 0 0 chr11 61882547 61882621 -59961235 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1057 326 310 131 78 chr11 61882754 61882999 -59960857 - Tigger13a DNA MER2_type -494 277 20 1 1057 256 316 61 0 chr11 61883652 61883750 -59960106 - L1MB4 LINE L1 -27 6157 6054 1 1057 827 155 20 34 chr11 61884202 61884349 -59959507 - B1_Mur2 SINE Alu 0 149 5 1 1057 266 292 104 29 chr11 61884368 61884541 -59959315 + L1M3 LINE L1 5599 5784 -399 1 1057 449 258 47 0 chr11 61884615 61884743 -59959113 - L1MB4 LINE L1 -233 5947 5814 1 1057 230 261 0 0 chr11 61884767 61884813 -59959043 + PB1D9 SINE Alu 2 47 -73 1 1057 273 153 164 109 chr11 61884818 61884928 -59958928 + L1MB3 LINE L1 6068 6183 0 1 1057 1030 232 0 10 chr11 61884952 61885161 -59958695 + B3 SINE B2 4 210 -6 1 1057 235 239 88 201 chr11 61885277 61885471 -59958385 + B4A SINE B4 53 224 -68 1 1057 618 145 73 132 chr11 61885325 61885476 -59958380 + B1_Mur2 SINE Alu 7 148 -1 1 1057 315 352 19 9 chr11 61885555 61885661 -59958195 - PB1D7 SINE Alu -13 107 1 1 1057 1219 157 0 5 chr11 61885675 61885874 -59957982 + URR1A DNA MER1_type 26 223 -3 1 1057 1084 269 105 15 chr11 61885974 61886317 -59957539 + MTD LTR MaLR 46 419 0 1 1057 214 390 9 19 chr11 61886973 61887080 -59956776 - L2 LINE L2 -507 2912 2807 1 1057 25 0 0 0 chr11 61887092 61887117 -59956739 + AT_rich Low_complexity Low_complexity 1 25 0 1 1057 1063 232 0 14 chr11 61887125 61887335 -59956521 - B3 SINE B2 -8 208 2 1 1057 1440 277 100 13 chr11 61888115 61888506 -59955350 + Tigger7 DNA MER2_type 35 459 -2032 1 1057 569 189 18 9 chr11 61888506 61888618 -59955238 + Tigger7 DNA MER2_type 2329 2441 -50 1 1057 316 322 40 7 chr11 61888726 61888876 -59954980 - L2a LINE L2 -262 3164 3010 1 1057 384 286 130 67 chr11 61888914 61889184 -59954672 - L2a LINE L2 -798 2621 2335 1 1057 965 232 186 23 chr11 61889191 61889540 -59954316 + Lx8 LINE L1 7066 7471 -2 1 1057 230 256 13 13 chr11 61889482 61889561 -59954295 + RMER1C Other Other 1261 1339 -3 1 1057 705 231 14 7 chr11 61889571 61889715 -59954141 + B1_Mur2 SINE Alu 3 147 -2 1 1057 26 50 0 0 chr11 61890898 61890938 -59952918 + GC_rich Low_complexity Low_complexity 1 40 0 1 1057 22 35 0 0 chr11 61891484 61891513 -59952343 + AT_rich Low_complexity Low_complexity 1 29 0 1 1057 253 154 0 0 chr11 61891868 61891907 -59951949 - tRNA-Gly-GGA tRNA tRNA -36 39 1 1 1057 854 36 209 0 chr11 61892142 61892252 -59951604 + B1_Mus2 SINE Alu 2 134 -13 1 1057 327 25 0 0 chr11 61892252 61892292 -59951564 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1057 233 351 67 67 chr11 61893274 61893497 -59950359 - LTR16B1 LTR ERVL -185 295 73 1 1057 489 294 0 32 chr11 61893603 61893726 -59950130 + RSINE1 SINE B4 8 126 -39 1 1057 213 313 45 57 chr11 61894249 61894337 -59949519 - B1_Mus1 SINE Alu -54 94 8 1 1057 511 254 84 28 chr11 61894272 61894414 -59949442 - ID_B1 SINE B4 -74 150 1 1 1057 677 161 0 8 chr11 61894438 61894511 -59949345 + polypyrimidine Low_complexity Low_complexity 58 130 0 1 1057 1093 54 7 7 chr11 61894511 61894661 -59949195 + (TTTC)n Simple_repeat Simple_repeat 1 150 0 1 1057 677 161 0 8 chr11 61894661 61894718 -59949138 + polypyrimidine Low_complexity Low_complexity 1 57 0 1 1057 357 24 0 0 chr11 61894723 61894765 -59949091 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1057 712 204 22 15 chr11 61894765 61894899 -59948957 - B1_Mur2 SINE Alu -14 135 1 1 1057 215 197 16 47 chr11 61895096 61895160 -59948696 + B1_Mur1 SINE Alu 88 149 0 1 1057 295 340 26 78 chr11 61895265 61895418 -59948438 - B1_Mur1 SINE Alu -3 146 2 1 1057 678 225 44 103 chr11 61896153 61896356 -59947500 + B4A SINE B4 102 292 0 1 1057 21 36 0 0 chr11 61896407 61896435 -59947421 + AT_rich Low_complexity Low_complexity 1 28 0 1 1057 207 204 0 0 chr11 61896834 61896878 -59946978 + A-rich Low_complexity Low_complexity 1 44 0 1 1057 558 179 22 12 chr11 61896888 61897005 -59946851 + ORR1D2 LTR MaLR 262 379 0 1 1057 1136 230 0 14 chr11 61897136 61897352 -59946504 - B3 SINE B2 -3 213 1 1 1057 571 254 14 7 chr11 61897950 61898089 -59945767 - B1F1 SINE Alu -8 141 2 1 1057 453 282 69 23 chr11 61898097 61898271 -59945585 - MamRep1161 DNA TcMar -403 554 373 1 1057 542 248 16 16 chr11 61898729 61898856 -59945000 - B3A SINE B2 -7 191 65 1 1057 217 209 23 0 chr11 61899140 61899183 -59944673 + ID4_ SINE ID 2 45 -38 1 1057 817 203 0 35 chr11 61899985 61900128 -59943728 + B1_Mur2 SINE Alu 1 138 -11 1 1057 6033 77 33 5 chr11 61901093 61901860 -59941996 + Lx3A LINE L1 6177 6964 -17 1 1057 180 0 0 0 chr11 61901863 61901883 -59941973 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1 1057 230 250 118 53 chr11 61902097 61902173 -59941683 + ID4 SINE ID 1 81 -2 1 1057 1069 233 5 18 chr11 61902243 61902462 -59941394 - B3 SINE B2 0 216 1 1 1057 5167 95 19 5 chr11 61903045 61903713 -59940143 - RLTR33 LTR ERVK 0 678 1 1 1057 704 213 235 6 chr11 61905161 61905331 -59938525 + B3 SINE B2 1 209 -7 1 1057 252 183 113 0 chr11 61905777 61905848 -59938008 - MLT1D LTR MaLR 0 505 427 1 1057 310 121 258 0 chr11 61905866 61905932 -59937924 - RMER4A LTR ERVK -19 566 484 1 1057 1842 148 71 3 chr11 61905917 61906243 -59937613 - RMER4A LTR ERVK -102 364 17 1 1057 348 296 84 0 chr11 61906255 61906397 -59937459 - MLT1D LTR MaLR -259 246 93 1 1057 2710 146 27 98 chr11 61906864 61907526 -59936330 + RMER6A LTR ERVK 57 671 -85 1 1057 532 242 31 131 chr11 61907818 61908014 -59935842 + B3A SINE B2 1 175 -18 1 1057 204 40 0 0 chr11 61908020 61908045 -59935811 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1057 283 317 35 109 chr11 61908608 61908810 -59935046 - MLT1N2 LTR MaLR -22 540 354 1 1057 240 59 0 0 chr11 61910101 61910135 -59933721 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1057 667 208 80 0 chr11 61910135 61910260 -59933596 - B1_Mur2 SINE Alu -10 139 5 1 1057 637 353 0 0 chr11 61910729 61910879 -59932977 - RSINE1 SINE B4 -2 163 14 1 1057 21 0 0 0 chr11 61910990 61911011 -59932845 + AT_rich Low_complexity Low_complexity 1 21 0 1 1057 417 238 12 12 chr11 61911111 61911192 -59932664 + PB1D10 SINE Alu 3 83 -34 1 1057 219 36 0 0 chr11 61911234 61911262 -59932594 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1057 1196 51 14 0 chr11 61911267 61911405 -59932451 - B1_Mm SINE Alu -5 142 3 1 1057 278 290 122 20 chr11 61911804 61911952 -59931904 + Kanga2_a DNA Tc2 142 304 -584 1 1057 324 0 0 0 chr11 61912067 61912103 -59931753 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1057 1270 68 0 0 chr11 61912103 61912264 -59931592 - B2_Mm2 SINE B2 -34 161 1 1 1057 595 144 22 0 chr11 61912264 61912354 -59931502 - 4.5SRNA scRNA scRNA -2 92 1 1 1057 263 272 275 51 chr11 61912947 61913125 -59930731 - MLT1J LTR MaLR -258 254 37 1 1057 332 292 11 22 chr11 61913232 61913323 -59930533 + PB1D10 SINE Alu 25 114 -3 1 1057 234 316 163 92 chr11 61913437 61913664 -59930192 + B4A SINE B4 50 292 0 1 1057 241 264 51 58 chr11 61913667 61913804 -59930052 + L1MA7 LINE L1 6155 6290 -1 1 1057 5033 68 24 0 chr11 61913993 61914613 -59929243 + L1_Mus3 LINE L1 5998 6632 -6 1 1057 824 193 7 21 chr11 61914815 61914958 -59928898 + B1_Mur1 SINE Alu 2 142 -7 1 1057 1245 157 102 5 chr11 61915104 61915309 -59928547 + URR1B DNA MER1_type 1 225 0 1 1057 4115 47 12 43 chr11 61915382 61915899 -59927957 + L1Md_F2 LINE L1 6081 6581 -1 1 1057 1180 36 29 0 chr11 61915960 61916099 -59927757 + B1_Mm SINE Alu 2 144 -3 1 1057 224 196 118 0 chr11 61916160 61916171 -59927685 + PB1D10 SINE Alu 49 105 -12 1 1057 244 200 0 0 chr11 61916171 61916211 -59927645 + ID_B1 SINE B4 173 212 -12 1 1057 249 283 135 21 chr11 61916250 61916391 -59927465 + MIR SINE MIR 31 187 -75 1 1057 486 220 0 32 chr11 61916391 61916485 -59927371 - PB1 SINE Alu -36 91 1 1 1057 533 287 186 35 chr11 61916931 61917322 -59926534 + MLT1G3 LTR MaLR 1 406 -142 1 1057 560 311 142 15 chr11 61917714 61917982 -59925874 + Tigger7 DNA MER2_type 9 310 -2181 1 1057 651 208 135 125 chr11 61918015 61918285 -59925571 + Tigger7 DNA MER2_type 2203 2488 -3 1 1057 238 312 0 13 chr11 61919319 61919397 -59924459 + MIRc SINE MIR 85 161 -107 1 1057 557 266 8 16 chr11 61919406 61919532 -59924324 + PB1 SINE Alu 1 125 -2 1 1057 405 0 0 0 chr11 61919582 61919627 -59924229 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1057 306 0 0 0 chr11 61919627 61919660 -59924196 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1057 755 135 23 31 chr11 61920656 61920786 -59923070 - B1_Mur4 SINE Alu -13 137 9 1 1057 243 0 0 0 chr11 61921013 61921040 -59922816 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1057 577 264 12 111 chr11 61921294 61921456 -59922400 + RSINE1 SINE B4 4 149 -16 1 1057 1047 264 131 16 chr11 61921533 61921914 -59921942 - L1MC1 LINE L1 -77 6256 5832 1 1057 1328 116 131 0 chr11 61922339 61922538 -59921318 - URR1B DNA MER1_type 0 225 1 1 1057 404 236 103 48 chr11 61922547 61922712 -59921144 - L1MC1 LINE L1 -651 5682 5509 1 1057 265 211 88 0 chr11 61922713 61922770 -59921086 + MTE2a LTR MaLR 1 62 -317 1 1057 574 193 8 102 chr11 61922811 61922938 -59920918 - B1_Mur4 SINE Alu -14 136 22 1 1057 873 68 22 50 chr11 61922945 61923084 -59920772 + B1_Mur3 SINE Alu 14 148 -1 1 1057 1034 172 83 31 chr11 61923163 61923391 -59920465 + MTE2a LTR MaLR 140 379 0 1 1057 541 289 62 69 chr11 61923392 61923477 -59920379 - L1MC1 LINE L1 -833 5511 5434 1 1057 437 286 8 25 chr11 61923477 61923599 -59920257 - PB1D7 SINE Alu 0 120 1 1 1057 720 244 106 5 chr11 61923599 61923887 -59919969 - L1MC1 LINE L1 -911 5433 5118 1 1057 324 0 0 0 chr11 61923957 61923993 -59919863 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1057 1209 76 6 0 chr11 61923993 61924150 -59919706 - B2_Mm2 SINE B2 -37 158 1 1 1057 836 142 25 31 chr11 61924560 61924720 -59919136 + B2_Mm2 SINE B2 3 161 -34 1 1057 1067 87 0 13 chr11 61924673 61924824 -59919032 - B2_Mm2 SINE B2 -25 170 22 1 1057 3101 268 173 21 chr11 61924827 61925873 -59917983 - MTEa-int LTR MaLR -375 1205 1 1 1057 342 278 123 74 chr11 61925873 61926036 -59917820 - MTEa LTR MaLR -2 377 207 1 1057 185 35 69 0 chr11 61926148 61926177 -59917679 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1057 222 118 0 0 chr11 61926984 61927018 -59916838 + (CATA)n Simple_repeat Simple_repeat 1 34 0 1 1057 318 305 93 49 chr11 61927146 61927329 -59916527 - RMER15 LTR ERVL -5 570 380 1 1057 322 230 64 115 chr11 61927452 61927609 -59916247 + MT2B LTR ERVL 142 290 -311 1 1057 689 178 59 0 chr11 61927484 61927619 -59916237 + B1F2 SINE Alu 7 149 0 1 1057 906 209 78 44 chr11 61928490 61928695 -59915161 - B3 SINE B2 -3 213 2 1 1057 968 142 7 33 chr11 61929046 61929199 -59914657 - B1_Mur3 SINE Alu 0 149 1 1 1057 264 111 31 16 chr11 61929411 61929475 -59914381 + T-rich Low_complexity Low_complexity 1 65 0 1 1057 622 152 18 18 chr11 61929475 61929589 -59914267 - B1_Mus1 SINE Alu 0 148 35 1 1057 328 332 70 96 chr11 61929477 61929707 -59914149 - ID_B1 SINE B4 0 224 1 1 1057 1912 263 35 10 chr11 61930250 61930741 -59913115 - Lx7 LINE L1 -378 7318 6816 1 1057 229 224 0 0 chr11 61931150 61931199 -59912657 + T-rich Low_complexity Low_complexity 1 49 0 1 1057 207 105 0 26 chr11 61932948 61932987 -59910869 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1057 784 261 36 0 chr11 61933378 61933573 -59910283 - L1M5 LINE L1 -436 5688 5487 1 1057 983 163 46 6 chr11 61934282 61934455 -59909401 - B3A SINE B2 -17 181 2 1 1057 430 255 78 10 chr11 61934788 61934891 -59908965 + PB1D10 SINE Alu 2 111 -6 1 1057 208 298 18 0 chr11 61934897 61934954 -59908902 + GA-rich Low_complexity Low_complexity 1 58 0 1 1057 644 303 70 52 chr11 61934981 61935367 -59908489 - L1MB7 LINE L1 -58 6126 5734 1 1057 183 80 0 0 chr11 61935434 61935459 -59908397 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1057 294 284 266 0 chr11 61935497 61935606 -59908250 - RSINE1 SINE B4 -18 147 10 1 1057 1139 106 0 0 chr11 61935661 61935802 -59908054 + B1_Mus1 SINE Alu 1 141 -7 1 1057 459 125 0 0 chr11 61935805 61935877 -59907979 + (ATG)n Simple_repeat Simple_repeat 2 73 0 1 1057 1063 232 14 0 chr11 61936391 61936602 -59907254 + B3 SINE B2 2 215 -1 1 1057 207 0 0 0 chr11 61936683 61936706 -59907150 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1057 688 198 144 30 chr11 61938238 61938405 -59905451 - B3A SINE B2 -11 187 2 1 1057 501 192 164 0 chr11 61938538 61938642 -59905214 + B1_Mur2 SINE Alu 3 123 -26 1 1057 497 152 130 0 chr11 61939011 61939103 -59904753 + B3 SINE B2 2 105 -111 1 1057 1032 24 0 0 chr11 61939273 61939399 -59904457 - B1_Mus2 SINE Alu -20 127 2 1 1057 503 164 61 35 chr11 61939297 61939411 -59904445 - B4A SINE B4 -98 194 78 1 1057 328 263 159 99 chr11 61939459 61939594 -59904262 - MIR SINE MIR -14 248 105 1 1057 279 274 56 47 chr11 61939594 61939701 -59904155 + PB1D10 SINE Alu 1 108 -9 1 1057 273 57 0 0 chr11 61939710 61939745 -59904111 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1057 328 263 159 99 chr11 61939745 61939831 -59904025 - MIR SINE MIR -166 96 4 1 1057 201 138 0 0 chr11 61939968 61939997 -59903859 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 1 1057 709 337 19 46 chr11 61940553 61940814 -59903042 + B4A SINE B4 39 292 0 1 1057 210 37 0 0 chr11 61941639 61941666 -59902190 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1057 598 236 24 0 chr11 61942879 61943002 -59900854 - RSINE1 SINE B4 -36 129 4 1 1057 671 231 52 6 chr11 61943053 61943227 -59900629 - MER82 DNA MER2_type -257 396 215 1 1057 299 239 56 0 chr11 61943675 61943746 -59900110 - MER82 DNA MER2_type -515 138 64 1 1057 642 89 0 0 chr11 61944461 61944551 -59899305 + (TCCCC)n Simple_repeat Simple_repeat 3 92 0 1 1057 216 0 0 0 chr11 61944563 61944587 -59899269 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1057 354 237 61 22 chr11 61946375 61946479 -59897377 + B1F SINE Alu 2 106 -43 1 1057 934 181 99 21 chr11 61946585 61946777 -59897079 + B3 SINE B2 4 210 -6 1 1057 346 36 36 18 chr11 61947265 61947321 -59896535 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 1 1057 22 35 0 0 chr11 61947491 61947520 -59896336 + AT_rich Low_complexity Low_complexity 1 29 0 1 1057 216 0 0 0 chr11 61948389 61948413 -59895443 + (TTA)n Simple_repeat Simple_repeat 3 26 0 1 1057 230 314 0 41 chr11 61948453 61948526 -59895330 - PB1D10 SINE Alu -43 74 5 1 1057 217 280 26 39 chr11 61948456 61948534 -59895322 - ID_B1 SINE B4 -72 152 76 1 1057 408 266 65 0 chr11 61948576 61948715 -59895141 + B1F SINE Alu 2 149 0 1 1057 324 0 0 0 chr11 61948786 61948822 -59895034 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1057 834 164 0 15 chr11 61948822 61948958 -59894898 + B1_Mur4 SINE Alu 3 136 -14 1 1057 659 342 29 8 chr11 61948994 61949233 -59894623 + B4A SINE B4 5 248 -44 1 1057 186 197 42 14 chr11 61949375 61949447 -59894409 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 1 1057 290 217 0 0 chr11 61950089 61950149 -59893707 + ID4_ SINE ID 8 67 -16 1 1057 333 68 0 0 chr11 61950150 61950194 -59893662 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 1 1057 358 243 13 13 chr11 61951040 61951115 -59892741 - ID4 SINE ID -6 77 3 1 1057 792 92 55 0 chr11 61951829 61951992 -59891864 + (TC)n Simple_repeat Simple_repeat 2 173 0 1 1057 259 301 12 0 chr11 61953560 61953643 -59890213 - L1M5 LINE L1 -1198 4948 4865 1 1057 351 0 0 0 chr11 61953759 61953798 -59890058 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1057 264 387 66 0 chr11 61953838 61953944 -59889912 + ID_B1 SINE B4 84 196 -28 1 1057 772 200 0 7 chr11 61954384 61954520 -59889336 + B1_Mur2 SINE Alu 2 136 -13 1 1057 633 167 0 118 chr11 61954871 61955007 -59888849 - B1F2 SINE Alu -7 142 23 1 1057 4875 87 21 13 chr11 61955226 61955900 -59887956 - Lx2 LINE L1 0 6997 6319 1 1057 435 84 14 14 chr11 61956523 61956595 -59887261 + B1_Mur4 SINE Alu 50 121 -29 1 1057 697 267 48 58 chr11 61957613 61957820 -59886036 - B3 SINE B2 -11 205 1 1 1057 328 240 59 20 chr11 61958280 61958382 -59885474 - PB1 SINE Alu 0 127 22 1 1057 472 208 200 0 chr11 61960844 61960964 -59882892 - B1_Mur2 SINE Alu -5 144 1 1 1057 1186 35 21 0 chr11 61962482 61962627 -59881229 + B1_Mus1 SINE Alu 1 148 0 1 1057 685 269 39 17 chr11 61962691 61962869 -59880987 + B3A SINE B2 1 182 -16 1 1057 465 122 0 0 chr11 61963091 61963165 -59880691 + (TCCCC)n Simple_repeat Simple_repeat 4 77 0 1 1057 671 110 11 49 chr11 61963175 61963304 -59880552 - B1_Mus2 SINE Alu -10 138 2 1 1057 397 113 0 0 chr11 61963563 61963625 -59880231 - MTD LTR MaLR -357 62 1 1 1057 853 250 10 19 chr11 61963727 61963935 -59879921 - B3 SINE B2 -10 206 1 1 1057 443 63 0 16 chr11 61964732 61964796 -59879060 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1057 578 275 50 6 chr11 61964818 61964979 -59878877 - B4A SINE B4 0 292 125 1 1057 704 213 82 35 chr11 61966100 61966270 -59877586 + B3A SINE B2 5 182 -16 1 1057 242 314 48 10 chr11 61966312 61966415 -59877441 + MIR SINE MIR 154 260 -2 1 1057 2527 267 103 12 chr11 61966550 61967445 -59876411 - Tigger1 DNA MER2_type -105 2313 1338 1 1057 309 316 0 0 chr11 61967515 61967591 -59876265 - RSINE1 SINE B4 -2 163 88 1 1057 183 80 0 0 chr11 61967662 61967687 -59876169 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1057 733 246 80 0 chr11 61967694 61967881 -59875975 - B3 SINE B2 -14 202 1 1 1057 547 276 59 0 chr11 61967916 61968086 -59875770 - Tigger1 DNA MER2_type -1128 1290 1111 1 1057 242 106 0 41 chr11 61968237 61968286 -59875570 - L1MB3 LINE L1 -1 6182 6136 1 1057 244 248 200 38 chr11 61969145 61969250 -59874606 + MER45A DNA Tip100 32 153 -25 1 1057 871 199 109 10 chr11 61969261 61969454 -59874402 - B3 SINE B2 0 216 5 1 1057 23 33 0 0 chr11 61969467 61969497 -59874359 + AT_rich Low_complexity Low_complexity 1 30 0 1 1057 269 301 141 25 chr11 61969516 61969766 -59874090 - B4A SINE B4 -2 290 12 1 1057 202 204 0 39 chr11 61969866 61969917 -59873939 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 1 1057 487 273 30 15 chr11 61970336 61970470 -59873386 + RSINE1 SINE B4 11 146 -19 1 1057 396 0 0 0 chr11 61970476 61970520 -59873336 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1057 751 231 57 38 chr11 61970563 61970774 -59873082 + B3 SINE B2 2 216 0 1 1057 263 229 0 0 chr11 61972105 61972153 -59871703 - RSINE1 SINE B4 -10 155 108 1 1057 321 250 0 0 chr11 61972276 61972352 -59871504 + PB1D10 SINE Alu 42 117 0 1 1057 28 61 0 0 chr11 61972363 61972412 -59871444 + AT_rich Low_complexity Low_complexity 1 49 0 1 1057 689 295 44 20 chr11 61972416 61972665 -59871191 - B4A SINE B4 -35 257 3 1 1057 661 249 121 70 chr11 61972957 61973229 -59870627 + B4A SINE B4 3 288 -4 1 1057 409 245 10 218 chr11 61974440 61974518 -59869338 - B3 SINE B2 -10 185 127 1 1057 1475 63 10 10 chr11 61974518 61974711 -59869145 + B2_Mm1t SINE B2 1 193 0 1 1057 409 294 18 128 chr11 61974711 61974825 -59869031 - B3 SINE B2 -80 136 33 1 1057 774 228 0 0 chr11 61975054 61975199 -59868657 + ID_B1 SINE B4 76 220 -4 1 1057 187 93 0 44 chr11 61975203 61975248 -59868608 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1057 251 331 94 21 chr11 61976261 61976548 -59867308 - L1M5 LINE L1 -513 5660 5353 1 1057 219 304 51 0 chr11 61976602 61976681 -59867175 - ID4_ SINE ID 0 83 1 1 1057 243 176 0 149 chr11 61976742 61976809 -59867047 + B2_Mm2 SINE B2 2 58 -137 1 1057 245 247 27 0 chr11 61976793 61976866 -59866990 + B3 SINE B2 137 211 -5 1 1057 250 235 86 0 chr11 61976884 61976965 -59866891 - L1M5 LINE L1 -867 5279 5192 1 1057 21 36 0 0 chr11 61976979 61977007 -59866849 + AT_rich Low_complexity Low_complexity 1 28 0 1 1057 317 311 18 72 chr11 61977022 61977133 -59866723 - RSINE1 SINE B4 0 165 61 1 1057 263 241 12 24 chr11 61977158 61977243 -59866613 - L1M5 LINE L1 -966 5180 5097 1 1057 380 274 18 97 chr11 61977265 61977298 -59866558 + PB1D9 SINE Alu 2 26 -94 1 1057 5431 101 39 10 chr11 61977298 61978120 -59865736 - Lx LINE L1 0 6654 5809 1 1057 380 274 18 97 chr11 61978120 61978199 -59865657 + PB1D9 SINE Alu 27 105 -15 1 1057 712 284 129 4 chr11 61980158 61980437 -59863419 - MLT1A0 LTR MaLR 0 365 52 1 1057 2025 194 70 13 chr11 61980984 61981455 -59862401 - RMER5 LTR ERV1 -4 530 33 1 1057 493 192 19 35 chr11 61981833 61981984 -59861872 + B1_Mur2 SINE Alu 2 148 -1 1 1057 304 319 92 71 chr11 61982547 61982958 -59860898 + L1M5 LINE L1 5436 5855 -269 1 1057 573 218 72 16 chr11 61983832 61984017 -59859839 + B3 SINE B2 1 194 -1 1 1057 4559 200 88 7 chr11 61984043 61984866 -59858990 - Lx9 LINE L1 -78 7566 6668 1 1057 2157 135 107 0 chr11 61984866 61985213 -59858643 + ORR1C2 LTR MaLR 1 384 0 1 1057 4559 200 88 7 chr11 61985213 61985377 -59858479 - Lx9 LINE L1 -977 6667 6499 1 1057 1185 196 8 21 chr11 61985375 61985609 -59858247 - L1_Rod LINE L1 -288 5559 5329 1 1057 706 168 25 9 chr11 61985609 61985778 -59858078 + ORR1C2 LTR MaLR 207 384 0 1 1057 500 181 12 0 chr11 61985782 61985865 -59857991 - Lx9 LINE L1 -983 6661 6578 1 1057 543 69 0 0 chr11 61985870 61985942 -59857914 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1 1057 1354 80 42 26 chr11 61985942 61986134 -59857722 - B2_Mm2 SINE B2 0 195 1 1 1057 917 142 18 6 chr11 61986200 61986363 -59857493 - L1_Rod LINE L1 -607 5240 5076 1 1057 633 227 56 7 chr11 61986804 61986946 -59856910 + B1_Mur2 SINE Alu 1 149 0 1 1057 338 282 126 33 chr11 61987214 61987397 -59856459 + MER58A DNA MER1_type 25 224 0 1 1057 828 218 5 57 chr11 61987911 61988120 -59855736 + B3A SINE B2 1 198 0 1 1057 277 312 37 0 chr11 61988605 61988714 -59855142 + MER68 LTR ERVL 8 120 -443 1 1057 392 211 56 21 chr11 61988996 61989126 -59854730 + PB1D10 SINE Alu 7 135 -15 1 1057 357 243 102 9 chr11 61989230 61989293 -59854563 + L1MB7 LINE L1 5832 5902 -282 1 1057 189 0 0 0 chr11 61989293 61989314 -59854542 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1057 357 243 102 9 chr11 61989314 61989358 -59854498 + L1MB7 LINE L1 5903 5949 -235 1 1057 2813 146 6 75 chr11 61989362 61990245 -59853611 + L1VL4 LINE L1 314 1131 -2484 1 1057 348 237 49 54 chr11 61990232 61990389 -59853467 + L1MB5 LINE L1 5935 6107 -252 1 1057 925 224 15 20 chr11 61990435 61990635 -59853221 - B3 SINE B2 0 216 18 1 1057 227 271 28 14 chr11 61990641 61990712 -59853144 + B4A SINE B4 81 152 -140 1 1057 351 267 32 4 chr11 61990649 61990753 -59853103 + PB1D9 SINE Alu 8 110 -10 1 1057 858 40 178 39 chr11 61990902 61991031 -59852825 - B1_Mus2 SINE Alu 0 147 1 1 1057 455 271 31 0 chr11 61991643 61991772 -59852084 + ID_B1 SINE B4 87 219 -5 1 1057 669 228 107 16 chr11 61991800 61991987 -59851869 + ID_B1 SINE B4 2 205 -19 1 1057 401 276 63 63 chr11 61992151 61992294 -59851562 - B4A SINE B4 -141 151 9 1 1057 1210 61 0 0 chr11 61992373 61992520 -59851336 - B1_Mm SINE Alu 0 147 1 1 1057 207 139 0 0 chr11 61993375 61993411 -59850445 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1057 186 133 0 0 chr11 61993417 61993447 -59850409 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1057 413 294 30 73 chr11 61993709 61993874 -59849982 + B4 SINE B4 133 290 -2 1 1057 513 0 0 0 chr11 61993885 61993942 -59849914 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1057 391 123 110 0 chr11 61994220 61994293 -59849563 + L1MB3 LINE L1 5832 5912 -271 1 1057 661 326 24 88 chr11 61994604 61994823 -59849033 - MTEb LTR MaLR -11 368 171 1 1057 564 53 0 0 chr11 61994823 61994899 -59848957 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 1057 661 326 24 88 chr11 61994899 61995019 -59848837 - MTEb LTR MaLR -209 170 52 1 132 17142 49 0 1 chr11 61995058 61997856 -59846000 - L1Md_F2 LINE L1 -2 6580 3784 1 1058 192 293 146 0 chr11 61997910 61997992 -59845864 - MIRb SINE MIR -119 149 56 1 1058 270 0 0 0 chr11 61998086 61998116 -59845740 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1058 510 126 0 0 chr11 61998116 61998219 -59845637 + (GA)n Simple_repeat Simple_repeat 2 104 0 1 1058 405 204 274 12 chr11 61998252 61998416 -59845440 + MER3 DNA MER1_type 2 208 -1 1 1058 192 269 0 37 chr11 61998853 61998907 -59844949 + L2c LINE L2 3300 3351 -36 1 1058 331 241 43 170 chr11 61998961 61999196 -59844660 + ORR1E LTR MaLR 5 209 -150 1 1058 608 138 0 0 chr11 61999201 61999295 -59844561 - B3 SINE B2 -121 95 2 1 1058 1006 239 47 4 chr11 61999693 61999999 -59843857 - MTE2b LTR MaLR 0 379 54 1 1058 499 268 78 26 chr11 62001244 62001397 -59842459 + RSINE1 SINE B4 5 165 0 1 1058 632 331 33 30 chr11 62001467 62001738 -59842118 + B4A SINE B4 2 273 -19 2 1058 322 247 13 0 chr11 62001943 62002020 -59841836 - MLT1H2 LTR MaLR 0 489 412 3 1058 1211 68 0 0 chr11 62002306 62002454 -59841402 + B1_Mus1 SINE Alu 1 148 0 4 1058 1253 20 7 7 chr11 62002697 62002844 -59841012 + B1_Mm SINE Alu 1 147 0 5 1058 270 95 0 0 chr11 62002846 62002888 -59840968 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1058 9325 93 35 7 chr11 62003008 62004848 -59839008 - L1VL2 LINE L1 -626 2989 165 7 1058 284 244 132 47 chr11 62004946 62005075 -59838781 - MLT1H2 LTR MaLR -295 260 121 3 1058 256 48 48 0 chr11 62005384 62005426 -59838430 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1058 891 128 42 7 chr11 62005426 62005557 -59838299 - B1_Mur4 SINE Alu -10 140 4 9 1058 198 0 0 0 chr11 62006171 62006193 -59837663 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1 1058 1177 62 0 0 chr11 62006193 62006337 -59837519 - B1_Mm SINE Alu -3 144 1 1 1058 713 187 44 22 chr11 62006344 62006481 -59837375 - B1_Mur4 SINE Alu -6 144 5 1 1058 914 152 27 7 chr11 62007250 62007396 -59836460 + B1_Mur4 SINE Alu 1 149 -1 1 1058 449 266 35 0 chr11 62007415 62007528 -59836328 + B1_Mur1 SINE Alu 33 149 0 1 1058 932 191 159 22 chr11 62007552 62007847 -59836009 + ORR1D1 LTR MaLR 1 352 -7 1 1058 198 0 0 0 chr11 62008241 62008263 -59835593 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1058 1155 65 0 0 chr11 62008264 62008403 -59835453 - B1_Mus2 SINE Alu -6 141 3 1 1058 413 247 0 0 chr11 62008502 62008583 -59835273 + ID4 SINE ID 2 82 -1 1 1058 197 250 144 22 chr11 62008780 62008870 -59834986 + L3b LINE CR1 197 297 -185 1 1058 207 196 0 0 chr11 62009000 62009046 -59834810 + T-rich Low_complexity Low_complexity 1 46 0 2 1058 1534 54 16 0 chr11 62011518 62011702 -59832154 - B2_Mm2 SINE B2 -7 188 2 2 1058 699 156 18 0 chr11 62011735 62011844 -59832012 - B1_Mur1 SINE Alu -5 144 34 2 1058 28 48 0 0 chr11 62011868 62011910 -59831946 + AT_rich Low_complexity Low_complexity 1 42 0 2 1058 850 254 14 40 chr11 62012156 62012378 -59831478 - B3 SINE B2 0 216 1 2 1058 739 188 14 43 chr11 62013071 62013210 -59830646 + B1_Mus2 SINE Alu 2 136 -11 2 1058 1083 82 0 40 chr11 62013210 62013361 -59830495 + B1_Mus2 SINE Alu 2 147 0 2 1058 1092 97 17 6 chr11 62013369 62013546 -59830310 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 2 1058 27 0 0 0 chr11 62014936 62014963 -59828893 + AT_rich Low_complexity Low_complexity 1 27 0 2 1058 973 184 100 0 chr11 62015240 62015430 -59828426 + B3 SINE B2 2 210 -6 2 1058 1492 223 140 11 chr11 62015654 62016012 -59827844 - MTD LTR MaLR -2 417 14 3 1058 2328 303 76 36 chr11 62016051 62017114 -59826742 - Lx8 LINE L1 -64 7409 6304 3 1058 1306 91 11 0 chr11 62017221 62017396 -59826460 + B2_Mm1t SINE B2 2 178 -15 3 1058 338 133 387 9 chr11 62017451 62017557 -59826299 + B2_Mm2 SINE B2 48 193 -2 3 1058 540 240 8 8 chr11 62017974 62018096 -59825760 - RSINE1 SINE B4 -42 123 2 3 1058 548 235 0 17 chr11 62018381 62018554 -59825302 + (ATGGTG)n Simple_repeat Simple_repeat 5 174 0 3 1058 1123 52 0 0 chr11 62019217 62019352 -59824504 + B1_Mus2 SINE Alu 2 136 -11 3 1058 188 35 35 0 chr11 62019353 62019382 -59824474 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1058 471 308 49 30 chr11 62019483 62019647 -59824209 - MLT2D LTR ERVL -154 260 94 3 1058 505 219 10 0 chr11 62019643 62019739 -59824117 - B1_Mur2 SINE Alu -51 98 2 3 1058 680 233 8 0 chr11 62019769 62019902 -59823954 + RSINE1 SINE B4 3 136 -29 4 1058 252 0 0 0 chr11 62019905 62019933 -59823923 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1058 217 321 122 0 chr11 62020106 62020237 -59823619 - L2 LINE L2 -935 2484 2338 4 1058 1193 74 0 0 chr11 62020237 62020385 -59823471 + B1_Mus1 SINE Alu 1 148 0 4 1058 346 248 52 26 chr11 62020585 62020701 -59823155 - MLT1A1 LTR MaLR -22 386 268 4 1058 707 250 7 7 chr11 62022271 62022416 -59821440 + ID_B1 SINE B4 78 222 -2 4 1058 225 197 145 66 chr11 62023616 62023692 -59820164 - Charlie11 DNA MER1_type -1035 1161 1080 4 1058 259 365 0 0 chr11 62023768 62023842 -59820014 - PB1 SINE Alu -40 87 14 4 1058 270 259 55 5 chr11 62023861 62023961 -59819895 + ID4_ SINE ID 9 112 -40 4 1058 233 197 82 27 chr11 62024148 62024221 -59819635 + HAL1 LINE L1 1565 1641 -866 4 1058 228 308 0 60 chr11 62024525 62024608 -59819248 + RSINE1 SINE B4 77 154 -11 5 1058 231 167 0 23 chr11 62024776 62024819 -59819037 - B1_Mur2 SINE Alu -5 144 103 5 1058 240 35 0 0 chr11 62025390 62025419 -59818437 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5 1058 574 281 0 0 chr11 62025420 62025548 -59818308 - B3 SINE B2 -11 205 78 5 1058 224 267 110 55 chr11 62025745 62025785 -59818071 + PB1D9 SINE Alu 19 114 -6 5 1058 260 188 0 59 chr11 62025785 62025836 -59818020 + ID_B1 SINE B4 171 218 -6 5 1058 488 192 233 0 chr11 62026047 62026167 -59817689 + B1_Mur4 SINE Alu 3 150 0 5 1058 180 0 0 0 chr11 62026172 62026192 -59817664 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1058 428 240 60 0 chr11 62026229 62026329 -59817527 - ID_B1 SINE B4 -26 198 93 5 1058 582 238 24 96 chr11 62026642 62026851 -59817005 + B3A SINE B2 4 197 -1 5 1058 787 293 144 16 chr11 62027270 62027658 -59816198 - L1MB3 LINE L1 -67 6116 5679 6 1058 728 151 421 0 chr11 62027777 62027929 -59815927 - B3 SINE B2 0 216 1 6 1058 567 244 114 0 chr11 62028445 62028576 -59815280 + RSINE1 SINE B4 3 148 -17 6 1058 387 0 0 0 chr11 62028582 62028625 -59815231 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1058 396 0 0 0 chr11 62028625 62028668 -59815188 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1058 378 243 29 10 chr11 62028830 62028934 -59814922 - PB1D10 SINE Alu -7 110 5 6 1058 711 214 115 18 chr11 62029016 62029075 -59814781 - L1MC LINE L1 -802 5344 5278 6 1058 378 0 0 0 chr11 62029075 62029117 -59814739 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1058 711 214 115 18 chr11 62029117 62029343 -59814513 - L1MC LINE L1 -869 5277 5033 6 1058 726 295 169 40 chr11 62029495 62029789 -59814067 - L1MC LINE L1 -1434 4712 4396 6 1058 1212 61 0 0 chr11 62029789 62029936 -59813920 + B1_Mus2 SINE Alu 1 147 0 6 1058 726 295 169 40 chr11 62029936 62030675 -59813181 - L1MC LINE L1 -1751 4395 3546 6 1058 641 173 192 111 chr11 62030916 62031124 -59812732 + URR1B DNA MER1_type 1 225 0 6 1058 474 65 0 0 chr11 62031724 62031786 -59812070 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 7 1058 1020 61 0 0 chr11 62031786 62031918 -59811938 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 7 1058 645 98 0 26 chr11 62032198 62032313 -59811543 + (TCC)n Simple_repeat Simple_repeat 3 114 0 7 1058 693 153 65 58 chr11 62032362 62032501 -59811355 - B1_Mur4 SINE Alu -7 143 4 7 1058 230 214 0 0 chr11 62033974 62034016 -59809840 + C-rich Low_complexity Low_complexity 1 42 0 7 1058 371 187 220 0 chr11 62035409 62035500 -59808356 - PB1D10 SINE Alu -6 111 1 7 1058 271 333 57 0 chr11 62035892 62035997 -59807859 + PB1 SINE Alu 2 112 -15 7 1058 354 333 161 31 chr11 62037427 62037749 -59806107 - MLT1A0 LTR MaLR 0 365 2 7 1058 430 264 102 95 chr11 62039297 62039561 -59804295 + ORR1E LTR MaLR 94 359 0 7 1058 389 243 111 9 chr11 62039585 62039693 -59804163 - MLT1D LTR MaLR -133 372 254 7 1058 322 278 91 80 chr11 62039796 62039972 -59803884 - MLT1D LTR MaLR -389 238 61 7 1058 952 259 157 74 chr11 62040065 62040536 -59803320 - MLT2B1 LTR ERVL -10 510 1 8 1058 302 386 8 8 chr11 62040925 62041058 -59802798 - MIRb SINE MIR -118 150 18 8 1058 315 0 0 0 chr11 62041240 62041275 -59802581 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1058 1031 231 9 5 chr11 62042209 62042422 -59801434 + B3 SINE B2 1 214 -2 8 1058 1189 75 0 0 chr11 62042431 62042577 -59801279 + B1_Mus2 SINE Alu 2 147 0 8 1058 180 0 0 0 chr11 62042584 62042604 -59801252 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 8 1058 280 304 138 54 chr11 62043007 62043174 -59800682 - MLT1A LTR MaLR -90 284 104 8 1058 2928 117 2 39 chr11 62043486 62043950 -59799906 - RMER6B LTR ERVK -1 460 14 8 1058 317 208 0 13 chr11 62044298 62044376 -59799480 + GA-rich Low_complexity Low_complexity 3 79 0 8 1058 1522 0 10 0 chr11 62044380 62044579 -59799277 + (GAA)n Simple_repeat Simple_repeat 1 200 0 8 1058 291 85 0 0 chr11 62046068 62046115 -59797741 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 9 1058 1618 233 61 13 chr11 62046130 62046526 -59797330 + MTD LTR MaLR 4 418 -1 9 1058 679 185 85 0 chr11 62046823 62046953 -59796903 - B1_Mur3 SINE Alu -6 143 3 9 1058 350 241 12 12 chr11 62046953 62047033 -59796823 - ID4_ SINE ID -2 81 2 9 1058 408 156 0 0 chr11 62047065 62047129 -59796727 - ID4 SINE ID -15 68 5 9 1058 189 0 0 0 chr11 62047184 62047205 -59796651 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1058 595 229 76 106 chr11 62047212 62047476 -59796380 - B4A SINE B4 0 292 37 9 1058 718 166 117 56 chr11 62047476 62047655 -59796201 + ORR1B1 LTR MaLR 1 190 -204 9 1058 1112 90 14 0 chr11 62047697 62047841 -59796015 + B1_Mus1 SINE Alu 3 148 0 9 1058 252 143 0 0 chr11 62047842 62047884 -59795972 + (GGAGAA)n Simple_repeat Simple_repeat 5 46 0 9 1058 1059 125 0 0 chr11 62047887 62048055 -59795801 + (GAA)n Simple_repeat Simple_repeat 1 168 0 1 1058 496 194 57 19 chr11 62048084 62048189 -59795667 + B1_Mur1 SINE Alu 41 149 0 1 1058 363 212 0 0 chr11 62048486 62048571 -59795285 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1058 365 220 211 70 chr11 62048571 62048713 -59795143 - RSINE1 SINE B4 0 165 4 1 1058 743 198 149 17 chr11 62048736 62048755 -59795101 - B3A SINE B2 0 198 182 1 1058 216 0 0 0 chr11 62048755 62048779 -59795077 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1058 743 198 149 17 chr11 62048779 62048934 -59794922 - B3A SINE B2 -17 181 1 1 1058 443 279 48 16 chr11 62048945 62048980 -59794876 + RLTR20A1 LTR ERVK 424 460 -91 1 1058 495 0 0 0 chr11 62048980 62049035 -59794821 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1058 443 279 48 16 chr11 62049035 62049123 -59794733 + RLTR20A1 LTR ERVK 461 551 0 1 1058 873 222 62 5 chr11 62049678 62049873 -59793983 - B4A SINE B4 -84 208 3 1 1058 473 271 25 0 chr11 62049959 62050081 -59793775 - PB1 SINE Alu -1 126 2 1 1058 1557 178 65 59 chr11 62050739 62050903 -59792953 + ORR1D1 LTR MaLR 2 166 -208 1 1058 208 67 43 43 chr11 62050903 62050950 -59792906 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1058 1557 178 65 59 chr11 62050950 62051156 -59792700 + ORR1D1 LTR MaLR 167 374 0 1 1058 310 232 14 66 chr11 62051215 62051326 -59792530 - MLT1A1 LTR MaLR -13 395 240 1 1058 252 266 117 0 chr11 62051364 62051458 -59792398 + PB1D10 SINE Alu 1 105 -12 1 1058 261 0 0 0 chr11 62051467 62051496 -59792360 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1058 334 252 26 80 chr11 62052189 62052227 -59791629 + MT2B LTR ERVL 134 276 -325 1 1058 476 212 43 0 chr11 62052227 62052340 -59791516 + B1F SINE Alu 4 122 -27 1 1058 901 103 0 62 chr11 62052700 62052845 -59791011 + B1_Mus1 SINE Alu 12 147 -1 1 1058 185 246 0 15 chr11 62053041 62053107 -59790749 + GA-rich Low_complexity Low_complexity 2 66 0 1 1058 265 153 271 0 chr11 62053320 62053405 -59790451 + B1F SINE Alu 42 149 0 1 1058 330 254 0 0 chr11 62053419 62053478 -59790378 + ID4 SINE ID 14 72 -11 1 1058 388 0 19 19 chr11 62053478 62053531 -59790325 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1058 404 302 34 8 chr11 62053844 62053961 -59789895 + PB1 SINE Alu 6 125 -2 1 1058 503 289 110 29 chr11 62054026 62054400 -59789456 + L1MB2 LINE L1 5727 6130 -41 1 1058 198 0 0 0 chr11 62054741 62054763 -59789093 + (GCCTG)n Simple_repeat Simple_repeat 3 24 0 1 1058 234 0 0 0 chr11 62055569 62055595 -59788261 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1058 379 367 8 23 chr11 62055733 62055864 -59787992 + B4A SINE B4 48 176 -116 1 1058 290 345 23 6 chr11 62055905 62056080 -59787776 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1058 477 248 77 0 chr11 62056265 62056382 -59787474 + RSINE1 SINE B4 3 128 -37 1 1058 340 253 132 0 chr11 62056496 62056579 -59787277 + B4A SINE B4 20 113 -179 1 1058 376 241 0 12 chr11 62056613 62056624 -59787232 + ID2 SINE ID 1 11 -72 1 1058 441 0 0 0 chr11 62056624 62056673 -59787183 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1058 376 241 0 12 chr11 62056673 62056745 -59787111 + ID2 SINE ID 12 82 -1 1 1058 218 337 23 35 chr11 62056860 62056946 -59786910 - MIR3 SINE MIR -29 179 95 1 1058 531 216 192 0 chr11 62057192 62057317 -59786539 - B1_Mur2 SINE Alu 0 149 1 1 1058 563 227 72 41 chr11 62059300 62059591 -59784265 - RMER1B Other Other -632 434 37 1 1058 582 54 0 0 chr11 62059648 62059722 -59784134 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 1 1058 238 260 13 0 chr11 62059751 62059828 -59784028 - L1M4 LINE L1 -1454 4692 4615 1 1058 378 151 110 55 chr11 62059888 62059929 -59783927 + ID_B1 SINE B4 129 165 -59 1 1058 576 0 0 0 chr11 62059929 62059993 -59783863 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 1 1058 378 151 110 55 chr11 62059993 62060042 -59783814 + ID_B1 SINE B4 166 224 0 1 1058 188 35 35 0 chr11 62060111 62060140 -59783716 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1 1058 905 69 130 8 chr11 62061006 62061137 -59782719 + B1_Mm SINE Alu 1 147 0 1 1058 300 119 0 0 chr11 62061188 62061247 -59782609 + (A)n Simple_repeat Simple_repeat 1 59 0 1 1058 180 0 0 0 chr11 62061471 62061491 -59782365 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1058 1196 68 0 0 chr11 62061493 62061640 -59782216 + B1_Mus2 SINE Alu 1 147 0 1 1058 450 202 38 57 chr11 62065160 62065265 -59778591 + PB1 SINE Alu 23 125 -2 1 1058 508 242 7 50 chr11 62065531 62065670 -59778186 + B1F SINE Alu 5 137 -12 1 1058 399 21 0 0 chr11 62065671 62065719 -59778137 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1 1058 535 302 17 17 chr11 62065725 62065897 -59777959 + B3A SINE B2 27 198 0 1 1058 1235 264 103 46 chr11 62067757 62068261 -59775595 + MT2A LTR ERVL 1 533 0 1 1058 206 209 0 0 chr11 62068960 62069003 -59774853 + G-rich Low_complexity Low_complexity 1 43 0 1 1058 635 240 0 8 chr11 62069087 62069209 -59774647 - RSINE1 SINE B4 -2 163 43 1 1058 380 294 19 10 chr11 62069210 62069313 -59774543 - PB1D10 SINE Alu -11 106 3 1 1058 329 269 64 18 chr11 62069751 62069861 -59773995 - PB1D10 SINE Alu -2 115 1 1 1058 318 219 276 0 chr11 62069861 62069874 -59773982 - ID_B1 SINE B4 -1 223 67 1 1058 450 222 10 20 chr11 62069982 62070083 -59773773 - PB1D10 SINE Alu -15 102 3 1 1058 1043 227 43 0 chr11 62070112 62070319 -59773537 - B3 SINE B2 0 216 1 1 1058 297 143 20 0 chr11 62071894 62071943 -59771913 - MTD LTR MaLR -16 403 354 1 1058 395 227 330 43 chr11 62071997 62072147 -59771709 - MTD LTR MaLR -59 360 112 1 1058 504 212 103 16 chr11 62072147 62072192 -59771664 + B1F SINE Alu 2 52 -97 1 1058 180 0 0 0 chr11 62072192 62072212 -59771644 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1058 365 235 64 64 chr11 62072212 62072238 -59771618 - MTD LTR MaLR -308 111 83 1 1058 504 198 88 18 chr11 62072238 62072300 -59771556 + B1F SINE Alu 53 148 -1 1 1058 284 0 28 0 chr11 62073030 62073066 -59770790 + (CCCCCA)n Simple_repeat Simple_repeat 6 42 0 1 1058 1230 156 32 5 chr11 62073373 62073592 -59770264 - URR1B DNA MER1_type 0 225 1 1 1058 192 315 68 0 chr11 62073797 62073870 -59769986 + MIRm SINE MIR 99 176 -100 1 1058 314 211 28 14 chr11 62074871 62074943 -59768913 - ID_B1 SINE B4 -66 158 86 1 1058 197 274 261 0 chr11 62075083 62075240 -59768616 + L2 LINE L2 2548 2745 -674 1 1058 360 0 0 0 chr11 62075554 62075594 -59768262 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1058 639 242 13 7 chr11 62075905 62076059 -59767797 - RSINE1 SINE B4 -8 157 3 1 1058 864 277 24 0 chr11 62076290 62076496 -59767360 - ID_B1 SINE B4 -13 211 1 1 1058 468 302 97 78 chr11 62076550 62076881 -59766975 - MLT1L LTR MaLR -152 458 122 1 1058 708 170 218 45 chr11 62076913 62077092 -59766764 + B3 SINE B2 1 210 -6 1 1058 192 337 45 0 chr11 62077554 62077643 -59766213 - L2c LINE L2 -39 3348 3256 1 1058 321 257 112 26 chr11 62077787 62077903 -59765953 - PB1 SINE Alu -1 126 1 1 1058 205 77 77 0 chr11 62078021 62078060 -59765796 + T-rich Low_complexity Low_complexity 6 47 0 1 1058 860 170 7 33 chr11 62078213 62078365 -59765491 - B1_Mur3 SINE Alu -1 148 1 1 1058 686 310 31 86 chr11 62083057 62083406 -59760450 + ORR1E LTR MaLR 1 330 -29 1 1058 813 236 97 0 chr11 62085534 62085729 -59758127 - B3 SINE B2 -1 215 2 1 1058 1155 59 0 0 chr11 62086355 62086491 -59757365 + B1_Mus1 SINE Alu 2 137 -11 1 1058 558 0 0 0 chr11 62086491 62086553 -59757303 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1058 372 255 223 38 chr11 62086691 62087058 -59756798 + L1MA8 LINE L1 5856 6290 -1 1 1058 300 233 15 65 chr11 62087396 62087408 -59756448 - ID_B1 SINE B4 -202 90 59 1 1058 346 210 0 16 chr11 62087408 62087471 -59756385 - ID4_ SINE ID -6 77 16 1 1058 300 233 15 65 chr11 62087471 62087489 -59756367 - ID SINE ID -202 58 1 1 1058 401 291 51 0 chr11 62087566 62087683 -59756173 - B4 SINE B4 -167 125 3 1 1058 1163 175 29 14 chr11 62087757 62087966 -59755890 + B3 SINE B2 2 213 -3 1 1058 233 323 0 0 chr11 62088247 62088309 -59755547 - ID4_ SINE ID -18 65 4 1 1058 469 325 116 76 chr11 62088627 62088959 -59754897 - L1ME4a LINE L1 -224 5900 5562 1 1058 1502 183 92 29 chr11 62088959 62089308 -59754548 + ORR1D1 LTR MaLR 1 371 -3 1 1058 354 325 124 74 chr11 62089308 62089532 -59754324 - L1ME4a LINE L1 -601 5561 5309 1 1058 627 254 0 14 chr11 62089682 62089826 -59754030 - ID_B1 SINE B4 -2 222 81 1 1058 452 188 241 36 chr11 62089857 62090023 -59753833 - B3 SINE B2 -15 201 2 1 1058 405 345 79 58 chr11 62090241 62090481 -59753375 + HAL1 LINE L1 26 270 -2237 1 1058 399 175 147 55 chr11 62090491 62090600 -59753256 + B1_Mur2 SINE Alu 30 148 -1 1 1058 180 0 0 0 chr11 62090936 62090956 -59752900 + (TAAG)n Simple_repeat Simple_repeat 1 20 0 1 1058 234 295 79 15 chr11 62091154 62091357 -59752499 + HAL1 LINE L1 1069 1284 -1223 1 1058 515 281 69 21 chr11 62091398 62091587 -59752269 + B3A SINE B2 1 198 0 1 1058 588 201 272 23 chr11 62091704 62091877 -59751979 + B3 SINE B2 1 216 0 1 1058 319 281 88 32 chr11 62092014 62092139 -59751717 + MER2 DNA MER2_type 87 218 -127 1 1058 1172 110 34 17 chr11 62092152 62092328 -59751528 + B2_Mm1t SINE B2 1 179 -14 1 1058 307 137 0 65 chr11 62092342 62092410 -59751446 + B2_Mm2 SINE B2 48 109 -107 1 1058 667 307 87 38 chr11 62092591 62092665 -59751191 + HAL1 LINE L1 1526 1599 -908 1 1058 981 183 30 143 chr11 62092665 62093028 -59750828 + RLTRETN_Mm LTR ERVK 1 322 0 1 1058 667 307 87 38 chr11 62093028 62093508 -59750348 + HAL1 LINE L1 1600 2107 -400 1 1058 624 234 70 162 chr11 62094031 62094260 -59749596 - ID_B1 SINE B4 -6 218 11 1 1058 180 111 0 0 chr11 62094894 62094921 -59748935 + (CGGGG)n Simple_repeat Simple_repeat 3 29 0 1 1058 33 43 0 0 chr11 62095209 62095256 -59748600 + GC_rich Low_complexity Low_complexity 1 47 0 1 1058 543 112 32 53 chr11 62095992 62096086 -59747770 + B1_Mur3 SINE Alu 52 143 -6 1 1058 320 365 43 33 chr11 62096259 62096443 -59747413 + L2 LINE L2 2745 2930 -489 2 1058 431 238 119 37 chr11 62096770 62096879 -59746977 + B1_Mur3 SINE Alu 2 119 -1 2 1058 285 294 102 39 chr11 62096880 62097010 -59746846 - MLT1J1 LTR MaLR -323 189 60 2 1058 1490 43 37 0 chr11 62097796 62097984 -59745872 - B2_Mm2 SINE B2 0 195 1 2 1058 1657 213 91 43 chr11 62098624 62098997 -59744859 - MTD LTR MaLR -10 409 19 2 1058 489 34 0 0 chr11 62099252 62099311 -59744545 + (TTC)n Simple_repeat Simple_repeat 2 60 0 2 1058 871 168 221 9 chr11 62099808 62100018 -59743838 - MTC LTR MaLR 0 421 179 2 1058 970 0 0 0 chr11 62100017 62100129 -59743727 - B1_Mus2 SINE Alu 0 147 36 2 1058 897 191 122 5 chr11 62100127 62100316 -59743540 - MTC LTR MaLR -209 212 2 2 1058 741 175 71 0 chr11 62100953 62101079 -59742777 - B1_Mur2 SINE Alu -7 142 8 2 1058 33 66 0 0 chr11 62101091 62101152 -59742704 + AT_rich Low_complexity Low_complexity 1 61 0 2 1058 3213 128 47 45 chr11 62101161 62101758 -59742098 - Lx4A LINE L1 -76 6982 6385 2 1058 1844 138 15 27 chr11 62101756 62102091 -59741765 + Lx4A LINE L1 6048 6378 -680 2 1058 1406 224 51 6 chr11 62102182 62102491 -59741365 - MTD LTR MaLR -76 303 4 2 1058 2058 274 61 112 chr11 62102494 62102654 -59741202 - MTD-int LTR MaLR 0 1098 965 2 1058 848 170 28 0 chr11 62102654 62102795 -59741061 - B1_Mur2 SINE Alu 0 149 5 2 1058 2203 250 45 72 chr11 62102795 62103756 -59740100 - MTD-int LTR MaLR -134 964 36 2 1058 905 184 100 6 chr11 62103761 62103941 -59739915 - MTD LTR MaLR -8 411 215 2 1058 406 243 0 105 chr11 62104307 62104431 -59739425 + MT2B LTR ERVL 154 264 -337 2 1058 1134 50 0 0 chr11 62104327 62104466 -59739390 + B1_Mm SINE Alu 9 147 0 2 1058 271 114 68 0 chr11 62106234 62106278 -59737578 - B1_Mur1 SINE Alu -10 139 93 2 1058 307 349 168 17 chr11 62106630 62107035 -59736821 + L2a LINE L2 2181 2646 -773 2 1058 926 58 0 0 chr11 62107499 62107619 -59736237 - B1_Mus2 SINE Alu 0 147 28 2 1058 210 293 187 43 chr11 62107621 62107760 -59736096 + L2a LINE L2 3268 3426 0 2 1058 250 310 44 1 chr11 62107968 62108044 -59735812 - B1F SINE Alu -14 106 29 2 1058 296 199 27 176 chr11 62108075 62108194 -59735662 - B1F SINE Alu -22 127 24 2 1058 433 246 148 0 chr11 62108112 62108234 -59735622 - ID_B1 SINE B4 -32 192 53 2 1058 387 0 0 0 chr11 62108500 62108543 -59735313 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1058 962 263 5 28 chr11 62108573 62108784 -59735072 - B4 SINE B4 -30 262 57 2 1058 480 270 9 26 chr11 62108792 62108906 -59734950 + PB1D7 SINE Alu 4 115 -5 2 1058 466 255 161 18 chr11 62108915 62109083 -59734773 + B4 SINE B4 10 201 -91 2 1058 864 267 84 18 chr11 62109314 62109539 -59734317 + B4 SINE B4 41 280 -12 2 1058 279 0 0 0 chr11 62109863 62109894 -59733962 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1058 270 259 140 18 chr11 62109990 62110104 -59733752 - B4 SINE B4 -116 176 49 2 1058 371 266 125 60 chr11 62110203 62110387 -59733469 - HAL1 LINE L1 -322 2185 1990 2 1058 218 260 34 125 chr11 62110393 62110481 -59733375 - RSINE1 SINE B4 0 165 86 2 1058 854 157 56 56 chr11 62110472 62110668 -59733188 - ORR1D1 LTR MaLR -8 366 171 2 1058 424 271 235 43 chr11 62111137 62111299 -59732557 - B3A SINE B2 -4 194 2 2 1058 232 338 49 24 chr11 62111970 62112052 -59731804 - MLT1L LTR MaLR -328 282 199 2 1058 267 355 31 39 chr11 62112162 62112291 -59731565 - RSINE1 SINE B4 -36 129 2 2 1058 532 290 19 25 chr11 62113126 62113285 -59730571 - RSINE1 SINE B4 -6 159 2 2 1058 634 206 71 61 chr11 62113306 62113502 -59730354 - B3A SINE B2 0 198 1 2 1058 215 276 96 0 chr11 62113775 62113857 -59729999 + MIR SINE MIR 90 186 -90 2 1058 1218 64 7 0 chr11 62113943 62114084 -59729772 - B1_Mus1 SINE Alu -6 142 1 2 1058 1161 67 0 0 chr11 62114197 62114346 -59729510 + B2_Mm2 SINE B2 2 150 -45 2 1058 360 210 244 19 chr11 62114367 62114527 -59729329 - L1M4 LINE L1 -3162 2984 2789 2 1058 229 152 0 0 chr11 62114607 62114640 -59729216 - ID4_ SINE ID -17 66 34 2 1058 24 53 0 0 chr11 62114729 62114767 -59729089 + AT_rich Low_complexity Low_complexity 1 38 0 2 1058 950 175 165 0 chr11 62115941 62116135 -59727721 - URR1A DNA MER1_type 0 226 1 2 1058 267 330 118 9 chr11 62116295 62116405 -59727451 - B4 SINE B4 -167 125 4 2 1058 583 45 67 0 chr11 62116759 62116848 -59727008 - L1Md_F3 LINE L1 -1 6583 6489 2 1058 464 121 0 0 chr11 62116896 62116962 -59726894 - URR1B DNA MER1_type -2 223 158 2 1058 600 73 0 0 chr11 62117875 62117957 -59725899 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 2 1058 484 93 52 0 chr11 62117958 62118055 -59725801 + (TTCTC)n Simple_repeat Simple_repeat 4 105 0 2 1058 328 167 76 0 chr11 62118654 62118720 -59725136 + MIR SINE MIR 64 134 -74 2 1058 1358 164 9 27 chr11 62119232 62119451 -59724405 + B3 SINE B2 1 215 -1 2 1058 391 288 48 41 chr11 62119487 62119632 -59724224 + RSINE1 SINE B4 3 148 -17 2 1058 734 261 75 78 chr11 62119650 62120089 -59723767 - RMER4A LTR ERVK -9 576 18 2 1058 994 158 0 0 chr11 62120234 62120380 -59723476 - B1_Mur3 SINE Alu -1 148 3 2 1058 21 57 0 0 chr11 62120425 62120460 -59723396 + AT_rich Low_complexity Low_complexity 1 35 0 2 1058 277 288 314 19 chr11 62120466 62120622 -59723234 - B3 SINE B2 -13 203 2 2 1058 458 259 117 25 chr11 62120675 62120830 -59723026 - B3A SINE B2 -1 215 60 2 1058 304 318 0 12 chr11 62121234 62121320 -59722536 - B4 SINE B4 -206 86 2 2 1058 510 295 119 5 chr11 62121334 62121528 -59722328 - ID_B1 SINE B4 -7 217 2 2 1058 251 274 0 0 chr11 62121851 62121902 -59721954 + PB1D7 SINE Alu 43 93 -27 2 1058 297 274 0 0 chr11 62123347 62123409 -59720447 - ID4 SINE ID -7 76 15 2 1058 13626 80 11 2 chr11 62123426 62125942 -59717914 + L1_Mus2 LINE L1 3961 6503 -63 2 1058 1360 139 42 5 chr11 62126784 62127001 -59716855 + URR1B DNA MER1_type 1 225 0 2 1058 384 254 34 26 chr11 62127827 62127944 -59715912 - B1F SINE Alu -1 148 31 2 1059 630 241 0 0 chr11 62129803 62129919 -59713937 - B1_Mur1 SINE Alu -33 116 1 2 1059 303 350 87 7 chr11 62132362 62132500 -59711356 - RSINE1 SINE B4 -6 159 11 2 1059 24 32 0 0 chr11 62132519 62132550 -59711306 + AT_rich Low_complexity Low_complexity 1 31 0 2 1059 1477 34 103 0 chr11 62134110 62134266 -59709590 + B2_Mm1a SINE B2 1 156 -37 2 1059 243 0 0 0 chr11 62134266 62134293 -59709563 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 1059 1477 34 103 0 chr11 62134293 62134311 -59709545 + B2_Mm1a SINE B2 157 191 -2 2 1059 520 219 111 24 chr11 62134314 62134440 -59709416 + B3 SINE B2 1 137 -79 2 1059 251 243 100 0 chr11 62135866 62135936 -59707920 + B4A SINE B4 74 150 -142 2 1059 285 172 69 0 chr11 62135880 62135938 -59707918 + B1F2 SINE Alu 6 67 -82 2 1059 354 102 136 0 chr11 62136136 62136195 -59707661 - B1_Mus2 SINE Alu -15 132 66 2 1059 240 250 92 0 chr11 62136195 62136212 -59707644 - ID_B1 SINE B4 -15 209 127 2 1059 1152 103 102 6 chr11 62136291 62136467 -59707389 - B2_Mm2 SINE B2 -2 193 1 2 1059 841 220 121 35 chr11 62136896 62137094 -59706762 + B3 SINE B2 1 215 -1 2 1059 337 316 73 29 chr11 62138097 62138234 -59705622 + MIRc SINE MIR 12 154 -114 2 1059 216 158 0 0 chr11 62139293 62139331 -59704525 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 2 1059 682 184 78 35 chr11 62139408 62139549 -59704307 - B1_Mur2 SINE Alu -2 147 1 2 1059 699 222 8 0 chr11 62141519 62141645 -59702211 + B1_Mur3 SINE Alu 3 129 -20 2 1059 1060 60 105 0 chr11 62141824 62141957 -59701899 + B1_Mus2 SINE Alu 1 147 0 2 1059 258 105 0 0 chr11 62141957 62141995 -59701861 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1059 507 212 44 9 chr11 62142040 62142154 -59701702 - PB1D9 SINE Alu 0 120 3 2 1059 229 261 202 21 chr11 62142585 62142679 -59701177 - PB1D9 SINE Alu -6 114 4 2 1059 236 294 118 0 chr11 62143248 62143333 -59700523 - PB1D7 SINE Alu -20 100 6 2 1059 216 130 0 0 chr11 62143375 62143421 -59700435 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1059 573 260 153 75 chr11 62143869 62144110 -59699746 - B4A SINE B4 -7 285 26 2 1059 232 295 179 0 chr11 62146594 62146672 -59697184 - RSINE1 SINE B4 -63 102 11 2 1059 446 259 0 44 chr11 62147798 62147911 -59695945 + RSINE1 SINE B4 10 117 -48 2 1059 652 285 25 30 chr11 62148571 62148770 -59695086 - B4 SINE B4 -93 199 2 2 1059 22 0 0 0 chr11 62149876 62149898 -59693958 + AT_rich Low_complexity Low_complexity 1 22 0 2 1059 453 275 0 60 chr11 62150032 62150112 -59693744 - PB1D10 SINE Alu -8 109 32 2 1059 1605 184 164 6 chr11 62150112 62150429 -59693427 + ORR1B2 LTR MaLR 1 367 0 2 1059 453 275 0 60 chr11 62150429 62150464 -59693392 - PB1D10 SINE Alu -86 31 1 2 1059 1315 79 56 0 chr11 62151902 62152080 -59691776 - B2_Mm2 SINE B2 -6 189 2 2 1059 461 168 147 78 chr11 62152739 62152868 -59690988 - B1_Mus2 SINE Alu -5 142 5 2 1059 445 285 56 19 chr11 62153143 62153304 -59690552 - MER58A DNA MER1_type -12 212 46 2 1059 967 87 65 0 chr11 62153418 62153556 -59690300 - B1_Mus1 SINE Alu 0 148 2 2 1059 198 0 0 0 chr11 62154268 62154290 -59689566 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1059 1241 49 0 0 chr11 62154291 62154435 -59689421 + B1_Mus2 SINE Alu 2 145 -2 2 1059 295 23 45 0 chr11 62154435 62154479 -59689377 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1059 361 179 150 50 chr11 62154561 62154661 -59689195 + B1_Mur4 SINE Alu 41 150 0 3 1059 1035 106 140 18 chr11 62154741 62154905 -59688951 - B2_Mm2 SINE B2 -9 186 3 3 1059 468 249 148 117 chr11 62155240 62155395 -59688461 - B3 SINE B2 -13 203 42 3 1059 1312 58 102 17 chr11 62155395 62155572 -59688284 - B2_Mm2 SINE B2 -2 193 2 3 1059 468 249 148 117 chr11 62155572 62155612 -59688244 - B3 SINE B2 -175 41 2 3 1059 223 245 144 31 chr11 62155743 62155840 -59688016 - PB1D10 SINE Alu 0 117 10 3 1059 543 159 211 16 chr11 62156046 62156174 -59687682 - URR1A DNA MER1_type -6 220 68 3 1059 223 309 9 105 chr11 62156250 62156355 -59687501 - B4 SINE B4 -136 156 62 3 1059 5968 52 0 0 chr11 62157035 62157806 -59686050 + L1Md_F2 LINE L1 5528 6298 -284 3 1059 258 61 0 0 chr11 62157806 62157839 -59686017 + L1Md_T LINE L1 6394 6426 -156 3 1059 517 50 0 70 chr11 62157835 62157921 -59685935 + L1Md_F2 LINE L1 6491 6570 -12 3 1059 741 257 0 0 chr11 62158968 62159104 -59684752 + RSINE1 SINE B4 3 138 -27 3 1059 396 40 0 0 chr11 62159109 62159159 -59684697 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1059 23 54 0 0 chr11 62159211 62159248 -59684608 + AT_rich Low_complexity Low_complexity 1 37 0 3 1059 477 90 0 0 chr11 62159297 62159364 -59684492 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1059 325 200 15 0 chr11 62159370 62159435 -59684421 - B3 SINE B2 -143 73 8 3 1059 641 229 34 14 chr11 62159690 62159836 -59684020 + B1_Mur2 SINE Alu 1 149 0 3 1059 555 213 30 38 chr11 62159901 62160033 -59683823 + B1_Mur2 SINE Alu 2 132 -17 3 1059 39 60 0 0 chr11 62160308 62160375 -59683481 + AT_rich Low_complexity Low_complexity 1 67 0 3 1059 647 281 92 23 chr11 62160477 62160739 -59683117 - Lx7 LINE L1 -1810 5886 5607 3 1059 1405 290 135 20 chr11 62160737 62161532 -59682324 + Lx7 LINE L1 4729 5614 -266 3 1059 968 214 19 19 chr11 62161993 62162207 -59681649 - B3 SINE B2 0 216 3 3 1059 27 0 0 0 chr11 62162740 62162767 -59681089 + AT_rich Low_complexity Low_complexity 1 27 0 3 1059 432 262 97 0 chr11 62163094 62163197 -59680659 + B1_Mur1 SINE Alu 25 137 -12 3 1059 243 0 0 0 chr11 62163197 62163224 -59680632 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 3 1059 606 271 38 109 chr11 62163393 62163604 -59680252 + B3A SINE B2 3 198 0 3 1059 224 328 128 15 chr11 62165973 62166106 -59677750 - MER5A DNA MER1_type -27 162 15 3 1059 23 0 0 0 chr11 62167287 62167310 -59676546 + AT_rich Low_complexity Low_complexity 1 23 0 3 1059 1187 87 11 28 chr11 62167406 62167583 -59676273 + B2_Mm2 SINE B2 14 187 -8 3 1059 247 371 30 30 chr11 62167652 62167752 -59676104 + B1F SINE Alu 10 109 -40 3 1059 4476 158 124 37 chr11 62168415 62169425 -59674431 + RLTR25A LTR ERVK 2 1099 -4 3 1059 396 290 75 0 chr11 62169557 62169664 -59674192 + L1M4 LINE L1 587 701 -5841 3 1059 302 296 37 12 chr11 62169744 62169826 -59674030 - B1_Mur3 SINE Alu -63 86 3 3 1059 612 302 33 11 chr11 62169829 62170010 -59673846 + Tigger1 DNA MER2_type 2220 2404 -14 3 1059 743 191 7 14 chr11 62170065 62170208 -59673648 + B1_Mur1 SINE Alu 2 143 -6 3 1059 396 0 0 0 chr11 62170211 62170255 -59673601 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1059 354 200 128 89 chr11 62170399 62170531 -59673325 + B1_Mur3 SINE Alu 1 149 -1 3 1059 207 159 45 0 chr11 62170536 62170580 -59673276 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 3 1059 267 239 165 93 chr11 62171200 62171297 -59672559 + PB1D10 SINE Alu 7 110 -7 3 1059 591 283 20 7 chr11 62171299 62171452 -59672404 + RSINE1 SINE B4 5 159 -6 3 1059 393 22 0 0 chr11 62171455 62171501 -59672355 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1059 297 298 39 31 chr11 62171664 62171808 -59672048 + L1ME3 LINE L1 5331 5476 -708 3 1059 204 97 0 0 chr11 62171828 62171859 -59671997 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1059 308 302 107 16 chr11 62172057 62172178 -59671678 + L1ME3 LINE L1 5793 5924 -238 3 1059 275 270 212 45 chr11 62174111 62174243 -59669613 + B4 SINE B4 123 276 -16 3 1059 28 48 0 0 chr11 62174265 62174307 -59669549 + AT_rich Low_complexity Low_complexity 1 42 0 3 1059 1165 82 0 0 chr11 62174310 62174457 -59669399 + B1_Mus2 SINE Alu 1 147 0 3 1059 811 153 259 0 chr11 62174736 62174906 -59668950 + B3 SINE B2 3 216 0 3 1059 767 110 38 19 chr11 62175109 62175266 -59668590 + RMER17B LTR ERVK 302 461 -497 3 1059 831 72 0 0 chr11 62175267 62175378 -59668478 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 3 1059 255 322 0 17 chr11 62176579 62176639 -59667217 + PB1D10 SINE Alu 4 62 -55 3 1059 1268 109 38 0 chr11 62176810 62176993 -59666863 + B2_Mm2 SINE B2 1 190 -5 3 1059 357 300 71 18 chr11 62177447 62177513 -59666343 - B1F SINE Alu -17 132 67 3 1059 504 0 0 0 chr11 62177513 62177569 -59666287 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 3 1059 357 300 71 18 chr11 62177569 62177614 -59666242 - B1F SINE Alu -83 66 15 3 1059 203 0 37 0 chr11 62178204 62178231 -59665625 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 3 1059 1245 106 5 11 chr11 62178259 62178449 -59665407 + B2_Mm1t SINE B2 1 189 -4 3 1059 764 180 0 57 chr11 62178457 62178616 -59665240 + B1_Mur4 SINE Alu 1 150 0 3 1059 486 0 0 0 chr11 62178623 62178677 -59665179 + (TAA)n Simple_repeat Simple_repeat 1 54 0 3 1059 496 156 43 49 chr11 62178905 62179034 -59664822 - B1_Mus2 SINE Alu -10 137 15 3 1059 239 188 0 20 chr11 62179195 62179244 -59664612 + A-rich Low_complexity Low_complexity 2 49 0 3 1059 417 280 20 20 chr11 62179389 62179491 -59664365 + RSINE1 SINE B4 3 104 -61 3 1059 240 326 89 11 chr11 62179993 62180083 -59663773 - MIR SINE MIR -87 175 79 3 1059 910 33 125 0 chr11 62180827 62180947 -59662909 + B1_Mus1 SINE Alu 1 135 -13 3 1059 592 132 0 0 chr11 62181176 62181267 -59662589 + BC1_Mm scRNA scRNA 1 91 -61 3 1059 603 87 154 0 chr11 62181340 62181444 -59662412 - PB1D9 SINE Alu 0 120 1 3 1059 581 221 93 22 chr11 62181678 62181817 -59662039 - B1F1 SINE Alu 0 149 1 3 1059 2343 73 38 0 chr11 62181819 62182134 -59661722 + ORR1A2 LTR MaLR 1 327 0 3 1059 1137 75 0 0 chr11 62182424 62182571 -59661285 - B1_Mus1 SINE Alu 0 148 2 3 1059 312 250 17 0 chr11 62183050 62183110 -59660746 + ID4_ SINE ID 3 63 -20 3 1059 432 304 74 68 chr11 62183320 62183468 -59660388 + RSINE1 SINE B4 11 159 -6 3 1059 462 346 30 36 chr11 62184282 62184447 -59659409 + RSINE1 SINE B4 2 165 0 3 1059 21 0 0 0 chr11 62184449 62184470 -59659386 + AT_rich Low_complexity Low_complexity 1 21 0 3 1059 898 165 62 17 chr11 62184756 62184935 -59658921 + ORR1C1 LTR MaLR 130 316 -62 3 1059 414 382 8 0 chr11 62185420 62185551 -59658305 + RSINE1 SINE B4 5 136 -29 3 1059 224 312 52 0 chr11 62185703 62185780 -59658076 + ID4 SINE ID 1 81 -2 3 1059 568 125 29 0 chr11 62185785 62185889 -59657967 + G-rich Low_complexity Low_complexity 5 111 0 3 1059 597 52 0 0 chr11 62185905 62185982 -59657874 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 3 1059 344 304 71 0 chr11 62186000 62186112 -59657744 + B1F SINE Alu 18 137 -12 3 1059 1631 198 110 13 chr11 62187556 62187929 -59655927 + MTD LTR MaLR 11 419 0 3 1059 24 77 0 0 chr11 62188026 62188078 -59655778 + AT_rich Low_complexity Low_complexity 1 52 0 3 1059 504 0 0 0 chr11 62188078 62188134 -59655722 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 3 1059 471 329 32 50 chr11 62188345 62188566 -59655290 + MLT1B LTR MaLR 172 388 -2 3 1059 750 256 91 42 chr11 62188567 62188853 -59655003 - MER44A DNA MER2_type -1 338 39 3 1059 180 0 0 0 chr11 62189748 62189768 -59654088 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 3 1059 1109 83 7 0 chr11 62189768 62189913 -59653943 - B1_Mus2 SINE Alu 0 147 2 3 1059 321 247 44 66 chr11 62190500 62190591 -59653265 + PB1D10 SINE Alu 19 107 -10 3 1059 1557 57 0 0 chr11 62190922 62191115 -59652741 + B2_Mm1t SINE B2 1 193 0 3 1059 768 195 0 51 chr11 62191257 62191414 -59652442 - B1_Mur3 SINE Alu 0 149 1 3 1059 384 240 29 39 chr11 62191684 62191788 -59652068 + MT2B LTR ERVL 155 257 -344 3 1059 770 99 83 8 chr11 62191699 62191831 -59652025 + B1_Mus1 SINE Alu 6 147 -1 3 1059 34 55 0 0 chr11 62192487 62192542 -59651314 + AT_rich Low_complexity Low_complexity 1 55 0 3 1059 237 226 48 0 chr11 62192594 62192656 -59651200 + ID4 SINE ID 2 66 -17 3 1059 248 297 10 81 chr11 62192860 62192876 -59650980 + MT2B2 LTR ERVL 152 160 -424 3 1059 496 239 44 35 chr11 62192876 62192989 -59650867 + PB1D10 SINE Alu 4 117 0 3 1059 389 218 0 25 chr11 62193107 62193209 -59650647 + B4 SINE B4 1 96 -69 3 1059 502 147 165 64 chr11 62193365 62193474 -59650382 + B1_Mur4 SINE Alu 18 137 -13 3 1059 267 372 11 11 chr11 62193867 62193962 -59649894 + B4A SINE B4 14 108 -184 3 1059 254 231 185 0 chr11 62194082 62194147 -59649709 + RSINE1 SINE B4 85 161 -4 3 1059 776 265 28 52 chr11 62194589 62194800 -59649056 - B3 SINE B2 -10 206 1 3 1059 673 211 172 0 chr11 62195889 62196069 -59647787 + B3 SINE B2 2 212 -4 3 1059 261 250 16 32 chr11 62196168 62196230 -59647626 + RSINE1 SINE B4 3 63 -102 3 1059 1180 43 0 0 chr11 62196496 62196636 -59647220 + B1_Mus1 SINE Alu 2 141 -7 3 1059 739 158 29 7 chr11 62197673 62197813 -59646043 + B1_Mus2 SINE Alu 5 147 0 3 1059 257 216 0 73 chr11 62197928 62197983 -59645873 - B1_Mur4 SINE Alu -99 51 1 3 1059 604 64 0 0 chr11 62198005 62198099 -59645757 - L1_Mus3 LINE L1 -2 6636 6543 3 1059 265 207 11 11 chr11 62198237 62198325 -59645531 + CT-rich Low_complexity Low_complexity 2 89 0 4 1059 478 279 246 70 chr11 62198447 62198636 -59645220 + L1MA4A LINE L1 4374 4616 -1527 4 1059 806 172 21 0 chr11 62198636 62198781 -59645075 - B1_Mur4 SINE Alu 0 150 3 4 1059 478 279 246 70 chr11 62198781 62199165 -59644691 + L1MA4A LINE L1 4617 5048 -1095 4 1059 349 277 163 11 chr11 62199356 62199437 -59644419 + L1MA4A LINE L1 5673 5753 -550 4 1059 213 39 0 0 chr11 62199437 62199463 -59644393 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1059 349 277 163 11 chr11 62199463 62199571 -59644285 + L1MA4A LINE L1 5754 5891 -412 4 1059 466 179 0 0 chr11 62200457 62200543 -59643313 + B2_Mm2 SINE B2 1 86 -112 4 1059 300 53 0 0 chr11 62200594 62200632 -59643224 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 4 1059 231 185 0 0 chr11 62201489 62201505 -59642351 + A-rich Low_complexity Low_complexity 1 16 0 4 1059 1152 48 7 0 chr11 62201505 62201651 -59642205 + B1_Mus2 SINE Alu 1 147 0 4 1059 231 185 0 0 chr11 62201651 62201688 -59642168 + A-rich Low_complexity Low_complexity 17 53 0 4 1059 674 151 143 0 chr11 62201816 62201942 -59641914 + B1_Mur4 SINE Alu 1 144 -6 4 1059 252 0 0 0 chr11 62202728 62202756 -59641100 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1059 337 212 48 20 chr11 62202770 62202871 -59640985 - B3A SINE B2 -62 133 26 4 1059 316 333 58 26 chr11 62202897 62203088 -59640768 - B3A SINE B2 0 198 2 4 1059 29 84 0 0 chr11 62203297 62203368 -59640488 + AT_rich Low_complexity Low_complexity 1 71 0 4 1059 221 0 35 0 chr11 62203582 62203611 -59640245 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1059 809 164 14 0 chr11 62203858 62204004 -59639852 - B1_Mus1 SINE Alu 0 148 1 4 1059 410 173 0 39 chr11 62204020 62204098 -59639758 - B1_Mur1 SINE Alu -1 148 74 4 1059 329 270 0 67 chr11 62204021 62204140 -59639716 - ID_B1 SINE B4 0 224 114 4 1059 213 330 82 31 chr11 62204148 62204245 -59639611 - B3 SINE B2 -39 177 76 4 1059 1019 295 113 36 chr11 62204572 62205068 -59638788 + Lx8 LINE L1 6927 7460 -13 4 1059 1243 74 86 0 chr11 62205297 62205472 -59638384 - B2_Mm2 SINE B2 -5 190 1 4 1059 750 199 59 0 chr11 62205544 62205680 -59638176 - B1_Mur2 SINE Alu -1 148 5 4 1059 240 320 232 11 chr11 62206447 62206624 -59637232 + MIRb SINE MIR 8 223 -45 4 1059 1237 41 0 0 chr11 62206787 62206934 -59636922 - B1_Mus1 SINE Alu -1 147 1 4 1059 957 163 197 0 chr11 62206951 62207129 -59636727 - B3 SINE B2 -3 213 1 4 1059 365 265 95 36 chr11 62207494 62207631 -59636225 - B1_Mur3 SINE Alu -4 145 1 4 1059 258 240 211 0 chr11 62207703 62207807 -59636049 - B1_Mur1 SINE Alu -12 137 12 4 1059 313 256 98 0 chr11 62207829 62207911 -59635945 - B3A SINE B2 -22 176 87 4 1059 635 191 34 0 chr11 62208268 62208401 -59635455 - B1_Mur3 SINE Alu 0 150 2 4 1059 415 227 61 10 chr11 62208800 62208898 -59634958 - B1_Mus1 SINE Alu -45 103 1 4 1059 23 0 0 0 chr11 62208909 62208932 -59634924 + AT_rich Low_complexity Low_complexity 1 23 0 4 1059 180 0 0 0 chr11 62209015 62209035 -59634821 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1059 342 236 21 63 chr11 62209075 62209170 -59634686 - Lx8 LINE L1 -329 7144 7054 4 1059 311 284 0 63 chr11 62209442 62209521 -59634335 + ID SINE ID 2 75 -149 4 1059 207 0 0 0 chr11 62209521 62209544 -59634312 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 1059 518 268 16 0 chr11 62209819 62209942 -59633914 + B1_Mur2 SINE Alu 24 148 -1 4 1059 511 239 269 0 chr11 62210007 62210174 -59633682 - B3 SINE B2 -1 215 4 4 1059 622 184 156 123 chr11 62210309 62210520 -59633336 + ID_B1 SINE B4 7 224 0 4 1059 831 201 86 11 chr11 62210552 62210738 -59633118 + B3 SINE B2 12 211 -5 4 1059 274 338 73 53 chr11 62210822 62210972 -59632884 + RSINE1 SINE B4 11 163 -2 4 1059 852 158 29 0 chr11 62211035 62211174 -59632682 + B1_Mus1 SINE Alu 6 148 0 4 1059 1998 170 42 0 chr11 62211177 62211535 -59632321 + RMER1B Other Other 373 745 -321 4 1059 837 161 157 21 chr11 62211524 62211715 -59632141 + RMER1B Other Other 847 1063 -3 4 1059 1376 143 4 18 chr11 62212298 62212526 -59631330 - URR1B DNA MER1_type 0 225 1 4 1059 703 301 32 0 chr11 62213173 62213389 -59630467 - ID_B1 SINE B4 -1 223 1 4 1059 202 224 0 0 chr11 62215672 62215721 -59628135 + T-rich Low_complexity Low_complexity 1 49 0 4 1059 1160 35 21 0 chr11 62215722 62215866 -59627990 - B1_Mus2 SINE Alu 0 147 1 4 1059 300 250 18 0 chr11 62218115 62218171 -59625685 - ID4 SINE ID -13 70 14 4 1059 231 264 171 41 chr11 62218607 62218753 -59625103 + RSINE1 SINE B4 1 165 0 4 1059 3402 165 142 60 chr11 62219107 62219953 -59623903 + RMER21A LTR ERV1 33 947 0 4 1059 695 169 15 53 chr11 62220785 62220916 -59622940 - B1_Mur4 SINE Alu -19 131 6 4 1059 1146 234 5 0 chr11 62221399 62221613 -59622243 - B4A SINE B4 -77 215 1 4 1059 950 109 58 0 chr11 62221898 62222035 -59621821 - B1_Mus2 SINE Alu -2 145 1 4 1059 426 240 124 10 chr11 62222099 62222301 -59621555 - L1MC4 LINE L1 -4508 1707 1483 4 1059 547 220 88 29 chr11 62223335 62223471 -59620385 + B1_Mur1 SINE Alu 6 149 0 4 1059 355 263 16 73 chr11 62223503 62223626 -59620230 + B1F2 SINE Alu 33 148 -1 4 1059 1083 11 0 91 chr11 62223626 62223824 -59620032 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 1059 495 0 0 0 chr11 62223825 62223880 -59619976 + (GGAGA)n Simple_repeat Simple_repeat 5 59 0 4 1059 21 0 0 0 chr11 62223991 62224012 -59619844 + AT_rich Low_complexity Low_complexity 1 21 0 4 1059 1335 88 5 5 chr11 62224056 62224240 -59619616 + B2_Mm1t SINE B2 1 184 -9 4 1059 702 280 94 22 chr11 62225402 62225669 -59618187 + B4 SINE B4 2 287 -5 4 1059 348 24 0 0 chr11 62226167 62226208 -59617648 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1059 1895 60 131 0 chr11 62226431 62226713 -59617143 + ORR1A4 LTR MaLR 3 321 -8 4 1059 9781 140 55 65 chr11 62226717 62228701 -59615155 + ORR1A4-int LTR MaLR 1 1963 0 4 1059 2062 114 37 16 chr11 62228701 62229023 -59614833 + ORR1A4 LTR MaLR 1 329 0 4 1059 280 355 34 54 chr11 62229131 62229214 -59614642 + B1_Mm SINE Alu 1 82 -65 4 1059 1300 147 36 5 chr11 62229214 62229433 -59614423 + URR1A DNA MER1_type 1 226 0 4 1059 280 355 34 54 chr11 62229433 62229498 -59614358 + B1_Mm SINE Alu 83 146 -1 4 1059 25 31 0 0 chr11 62229547 62229579 -59614277 + AT_rich Low_complexity Low_complexity 1 32 0 4 1059 228 327 63 9 chr11 62229723 62229834 -59614022 + PB1D7 SINE Alu 4 120 0 4 1059 662 165 112 8 chr11 62229880 62230014 -59613842 + B1_Mur3 SINE Alu 1 148 -1 4 1059 21 57 0 0 chr11 62230014 62230049 -59613807 + AT_rich Low_complexity Low_complexity 1 35 0 4 1059 292 176 137 0 chr11 62230142 62230193 -59613663 - RSINE1 SINE B4 -17 148 91 4 1059 1026 80 7 0 chr11 62230216 62230354 -59613502 - B1_Mus1 SINE Alu -9 139 1 4 1059 299 215 0 108 chr11 62230395 62230515 -59613341 - L1M4 LINE L1 -742 5436 5330 4 1059 1565 43 5 0 chr11 62230634 62230820 -59613036 - B2_Mm1t SINE B2 -5 188 2 4 1059 180 0 0 0 chr11 62230869 62230889 -59612967 + (GGGGA)n Simple_repeat Simple_repeat 3 22 0 4 1059 225 196 0 0 chr11 62230893 62230939 -59612917 + A-rich Low_complexity Low_complexity 4 49 0 4 1059 219 88 0 0 chr11 62231131 62231165 -59612691 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1059 1093 97 0 0 chr11 62231165 62231310 -59612546 - B1_Mm SINE Alu -1 146 2 4 1059 1536 33 27 0 chr11 62231336 62231520 -59612336 + B2_Mm1t SINE B2 1 189 -4 4 1059 41 21 0 0 chr11 62231573 62231621 -59612235 + AT_rich Low_complexity Low_complexity 1 48 0 4 1059 356 248 53 87 chr11 62231654 62231804 -59612052 + B2_Mm2 SINE B2 42 186 -9 4 1059 341 307 62 8 chr11 62231806 62231934 -59611922 + L1MB7 LINE L1 5733 5867 -311 4 1059 371 275 30 7 chr11 62232028 62232181 -59611675 + L1MB7 LINE L1 6017 6173 -1 4 1059 375 281 19 46 chr11 62232215 62232323 -59611533 + PB1 SINE Alu 23 127 0 4 1059 1118 152 33 96 chr11 62232491 62232649 -59611207 + URR1B DNA MER1_type 1 146 -79 4 1059 1487 68 5 0 chr11 62232649 62232840 -59611016 + B2_Mm1t SINE B2 2 193 0 4 1059 1118 152 33 96 chr11 62232840 62232921 -59610935 + URR1B DNA MER1_type 147 225 0 4 1059 1190 62 0 0 chr11 62233642 62233786 -59610070 + B1_Mus1 SINE Alu 1 144 -4 4 1059 852 46 0 0 chr11 62233789 62233898 -59609958 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 4 1059 794 196 165 0 chr11 62233903 62234096 -59609760 + RCHARR1 DNA MER1_type 535 759 -215 4 1059 290 333 89 0 chr11 62234096 62234186 -59609670 + B1F SINE Alu 1 98 -51 4 1059 400 324 76 14 chr11 62234191 62234335 -59609521 + RSINE1 SINE B4 1 153 -12 4 1059 572 225 55 24 chr11 62234330 62234494 -59609362 + B3A SINE B2 16 184 -14 4 1059 682 219 93 17 chr11 62234940 62235124 -59608732 + B2_Mm2 SINE B2 3 206 -10 4 1059 975 129 0 0 chr11 62235187 62235327 -59608529 + B1_Mur3 SINE Alu 2 141 -8 4 1059 316 179 45 0 chr11 62235364 62235456 -59608400 + L1MA7 LINE L1 6175 6280 -20 4 1059 281 220 16 48 chr11 62235600 62235662 -59608194 - ID_B1 SINE B4 -115 109 50 4 1059 536 202 77 0 chr11 62235817 62235921 -59607935 + B1F2 SINE Alu 33 144 -5 4 1059 301 143 20 0 chr11 62236790 62236839 -59607017 - RMER30 DNA MER1_type -151 51 2 4 1059 310 204 0 23 chr11 62236980 62237043 -59606813 + B4A SINE B4 27 82 -210 4 1059 946 207 29 9 chr11 62237101 62237311 -59606545 - B3 SINE B2 -2 214 1 4 1059 787 104 106 56 chr11 62237400 62237542 -59606314 + B1_Mur4 SINE Alu 1 149 -1 4 1059 305 306 88 24 chr11 62237827 62238078 -59605778 - HAL1b LINE L1 -778 1231 965 4 1059 828 68 0 0 chr11 62238485 62238602 -59605254 + B1_Mus2 SINE Alu 30 146 -1 4 1059 24 53 0 0 chr11 62239003 62239041 -59604815 + AT_rich Low_complexity Low_complexity 1 38 0 5 1059 627 262 127 11 chr11 62239049 62239238 -59604618 + B3 SINE B2 1 211 -5 5 1059 372 279 170 44 chr11 62239238 62239714 -59604142 + L1MA8 LINE L1 4755 5290 -850 5 1059 299 300 22 0 chr11 62239727 62239817 -59604039 + B4A SINE B4 1 92 -200 5 1059 268 288 8 63 chr11 62240407 62240518 -59603338 + L1MA8 LINE L1 5371 5475 -693 5 1059 1275 27 0 0 chr11 62240518 62240665 -59603191 + B1_Mus2 SINE Alu 1 147 0 5 1059 268 288 8 63 chr11 62240665 62240679 -59603177 + L1MA8 LINE L1 5476 5489 -679 5 1059 677 298 19 19 chr11 62240700 62240909 -59602947 + B3 SINE B2 2 210 -6 5 1059 747 207 15 15 chr11 62240910 62241047 -59602809 + B1_Mur1 SINE Alu 1 137 -12 5 1059 1607 76 21 0 chr11 62241063 62241301 -59602555 + L1_Mm LINE L1 4273 4515 -1368 5 1059 1167 88 6 0 chr11 62241358 62241517 -59602339 + B2_Mm1t SINE B2 1 160 -33 5 1059 281 218 0 0 chr11 62241545 62241600 -59602256 + B2_Mm2 SINE B2 47 101 -94 5 1059 180 0 0 0 chr11 62241627 62241647 -59602209 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1059 894 67 104 0 chr11 62241772 62241907 -59601949 - B1_Mur4 SINE Alu 0 150 2 5 1059 319 252 11 41 chr11 62242050 62242209 -59601647 + L1MA8 LINE L1 5787 5941 -371 5 1059 33 25 0 0 chr11 62242336 62242376 -59601480 + AT_rich Low_complexity Low_complexity 1 40 0 5 1059 876 194 0 0 chr11 62242378 62242522 -59601334 + B1_Mur3 SINE Alu 2 145 -4 5 1059 775 255 37 0 chr11 62242540 62242701 -59601155 - B3 SINE B2 -48 168 2 5 1059 262 275 37 24 chr11 62242858 62242940 -59600916 - ID2 SINE ID 0 83 1 5 1059 38 0 0 0 chr11 62243060 62243098 -59600758 + AT_rich Low_complexity Low_complexity 1 38 0 5 1059 354 215 0 0 chr11 62243098 62243177 -59600679 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1059 22 0 0 0 chr11 62243205 62243227 -59600629 + AT_rich Low_complexity Low_complexity 1 22 0 5 1059 365 276 139 63 chr11 62243240 62243280 -59600576 + Lx9 LINE L1 5507 5546 -331 5 1059 1484 68 16 0 chr11 62243280 62243472 -59600384 + B2_Mm2 SINE B2 1 195 0 5 1059 567 246 150 61 chr11 62243472 62243697 -59600159 + Lx9 LINE L1 5547 5804 -1840 5 1059 1093 87 0 0 chr11 62243697 62243835 -59600021 + B1_Mus2 SINE Alu 1 138 -9 5 1059 212 59 29 0 chr11 62243835 62243869 -59599987 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1059 567 223 158 59 chr11 62243869 62244011 -59599845 + Lx9 LINE L1 5805 5958 -1686 5 1059 212 277 31 0 chr11 62244092 62244157 -59599699 + GA-rich Low_complexity Low_complexity 2 68 0 5 1059 1282 206 51 77 chr11 62244186 62244522 -59599334 + ORR1B2 LTR MaLR 2 328 -39 5 1059 798 38 114 0 chr11 62244503 62244608 -59599248 + B2_Mm2 SINE B2 9 125 -70 5 1059 198 167 0 0 chr11 62244619 62244655 -59599201 + GA-rich Low_complexity Low_complexity 2 37 0 5 1059 286 53 0 0 chr11 62244655 62244693 -59599163 + ORR1B2 LTR MaLR 330 367 0 5 1059 22 0 0 0 chr11 62244712 62244734 -59599122 + AT_rich Low_complexity Low_complexity 1 22 0 5 1059 849 274 81 31 chr11 62244763 62245147 -59598709 + Lx8 LINE L1 6224 6626 -847 5 1059 365 351 8 0 chr11 62245765 62245896 -59597960 + Lx8 LINE L1 6963 7094 -379 5 1059 588 191 8 17 chr11 62246279 62246396 -59597460 + B1_Mur1 SINE Alu 34 149 0 5 1059 402 369 24 42 chr11 62246399 62246566 -59597290 + RSINE1 SINE B4 2 165 0 5 1059 286 241 24 37 chr11 62246654 62246736 -59597120 + PB1D10 SINE Alu 1 81 -36 5 1059 232 323 71 57 chr11 62246736 62246795 -59597061 + ID_B1 SINE B4 82 224 0 5 1059 1303 81 16 26 chr11 62246813 62247004 -59596852 + B2_Mm2 SINE B2 3 191 -4 5 1059 21 36 0 0 chr11 62247004 62247032 -59596824 + AT_rich Low_complexity Low_complexity 1 28 0 5 1059 225 0 0 0 chr11 62247113 62247138 -59596718 + (CTG)n Simple_repeat Simple_repeat 1 25 0 5 1059 655 291 106 0 chr11 62247378 62247557 -59596299 - B3A SINE B2 0 198 1 5 1059 21 71 0 0 chr11 62247730 62247772 -59596084 + AT_rich Low_complexity Low_complexity 1 42 0 5 1059 418 286 7 48 chr11 62247865 62247887 -59595969 + ID SINE ID 65 84 -140 5 1059 549 100 0 0 chr11 62247887 62247977 -59595879 + (CAAGA)n Simple_repeat Simple_repeat 2 91 0 5 1059 601 229 25 0 chr11 62247979 62248101 -59595755 + B1_Mur1 SINE Alu 6 130 -19 5 1059 455 206 21 42 chr11 62248303 62248399 -59595457 - B3 SINE B2 0 216 123 5 1059 1178 55 7 0 chr11 62248405 62248551 -59595305 + B1_Mm SINE Alu 1 147 0 5 1059 312 94 0 0 chr11 62248551 62248604 -59595252 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1059 569 209 136 57 chr11 62248704 62248881 -59594975 + B3A SINE B2 2 192 -6 5 1059 669 292 82 60 chr11 62248917 62249065 -59594791 + L1MB5 LINE L1 5592 5741 -433 5 1059 1457 63 21 0 chr11 62249065 62249256 -59594600 + B2_Mm2 SINE B2 1 195 0 5 1059 669 292 82 60 chr11 62249256 62249403 -59594453 + L1MB5 LINE L1 5742 5895 -279 5 1059 1231 42 0 0 chr11 62249403 62249546 -59594310 + B1_Mus2 SINE Alu 5 147 0 5 1059 669 292 82 60 chr11 62249546 62249613 -59594243 + L1MB5 LINE L1 5896 5962 -212 5 1059 1245 41 0 0 chr11 62249674 62249820 -59594036 + B1_Mus2 SINE Alu 2 147 0 5 1059 840 167 14 0 chr11 62250347 62250485 -59593371 + B1_Mur4 SINE Alu 5 144 -6 5 1059 451 116 0 15 chr11 62250508 62250589 -59593267 + MTD LTR MaLR 343 421 0 5 1059 306 301 25 50 chr11 62250607 62250726 -59593130 - PB1D10 SINE Alu 0 117 2 5 1059 966 167 42 21 chr11 62250840 62251030 -59592826 + B2_Mm2 SINE B2 2 195 0 5 1059 472 275 176 0 chr11 62251227 62251358 -59592498 + RSINE1 SINE B4 2 155 -10 5 1059 485 351 8 0 chr11 62251565 62251699 -59592157 - ID_B1 SINE B4 -8 216 82 5 1059 212 0 36 0 chr11 62251784 62251812 -59592044 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1059 709 198 8 0 chr11 62252172 62252298 -59591558 + B3 SINE B2 4 130 -86 5 1059 1205 48 0 7 chr11 62253314 62253461 -59590395 - B1_Mus2 SINE Alu -1 146 1 5 1059 4437 155 50 41 chr11 62253522 62254419 -59589437 - Lx2B LINE L1 0 7000 6096 5 1059 1097 68 0 20 chr11 62254643 62254793 -59589063 + B1_Mus1 SINE Alu 2 148 0 5 1059 409 278 53 94 chr11 62255019 62255190 -59588666 + RSINE1 SINE B4 2 165 0 5 1059 768 279 58 19 chr11 62255297 62255505 -59588351 - B3 SINE B2 0 216 1 5 1059 339 319 74 16 chr11 62255648 62255769 -59588087 - RSINE1 SINE B4 -12 153 26 5 1059 1193 206 247 50 chr11 62255933 62256418 -59587438 + RMER4B LTR ERVK 1 581 -4 5 1059 341 239 15 114 chr11 62256433 62256565 -59587291 + PB1 SINE Alu 1 119 -8 5 1059 547 170 1 101 chr11 62256708 62256831 -59587025 + B1_Mur3 SINE Alu 9 120 0 5 1059 1357 46 69 0 chr11 62257027 62257202 -59586654 + B2_Mm2 SINE B2 1 187 -8 5 1059 1011 73 0 7 chr11 62257210 62257347 -59586509 + B1_Mus1 SINE Alu 1 136 -12 5 1059 376 97 675 34 chr11 62257694 62257811 -59586045 + B2_Mm2 SINE B2 2 193 -2 5 1059 494 77 185 11 chr11 62257824 62257896 -59585960 + B2_Mm1a SINE B2 83 160 -33 5 1059 246 32 0 0 chr11 62257896 62257927 -59585929 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1059 494 77 185 11 chr11 62257927 62257946 -59585910 + B2_Mm1a SINE B2 161 189 -4 5 1059 636 217 58 0 chr11 62258427 62258565 -59585291 - RSINE1 SINE B4 -15 150 5 5 1059 1172 61 0 0 chr11 62258667 62258814 -59585042 + B1_Mus2 SINE Alu 1 147 0 5 1059 365 316 29 43 chr11 62258842 62258856 -59585000 + B1F1 SINE Alu 1 137 -12 5 1059 461 250 8 72 chr11 62258856 62258981 -59584875 + ID_B1 SINE B4 96 212 -12 5 132 989 122 7 7 chr11 62259171 62259320 -59584536 + B1_Mur2 SINE Alu 1 149 0 5 1060 1070 202 20 5 chr11 62259672 62259876 -59583980 - B3 SINE B2 -9 207 1 5 1060 22 0 0 0 chr11 62260236 62260258 -59583598 + AT_rich Low_complexity Low_complexity 1 22 0 5 1060 761 203 13 20 chr11 62260258 62260409 -59583447 + B1_Mur4 SINE Alu 1 150 0 5 1060 370 260 110 0 chr11 62260482 62260582 -59583274 + RSINE1 SINE B4 3 113 -52 5 1060 405 301 62 29 chr11 62260645 62260854 -59583002 + B3 SINE B2 1 216 0 5 1060 1205 48 0 0 chr11 62260998 62261145 -59582711 + B1_Mus2 SINE Alu 1 147 0 5 1060 23 0 0 0 chr11 62261262 62261285 -59582571 + AT_rich Low_complexity Low_complexity 1 23 0 5 1060 500 307 72 14 chr11 62261304 62261477 -59582379 + B3 SINE B2 28 189 -27 5 1060 23 33 0 0 chr11 62261477 62261507 -59582349 + AT_rich Low_complexity Low_complexity 1 30 0 5 1060 1273 97 0 0 chr11 62261507 62261683 -59582173 + B2_Mm2 SINE B2 1 176 -19 5 1060 233 194 0 0 chr11 62261689 62261725 -59582131 + B1_Mur4 SINE Alu 1 36 -114 5 1060 425 287 24 24 chr11 62262447 62262572 -59581284 + PB1 SINE Alu 1 125 -2 5 1060 235 260 0 0 chr11 62262603 62262653 -59581203 + ID4 SINE ID 18 67 -16 5 1060 470 46 15 0 chr11 62262672 62262737 -59581119 + (CAGG)n Simple_repeat Simple_repeat 4 69 0 5 1060 246 275 61 44 chr11 62263407 62263521 -59580335 + PB1D10 SINE Alu 1 116 -1 5 1060 214 146 20 20 chr11 62263532 62263581 -59580275 + A-rich Low_complexity Low_complexity 2 50 0 5 1060 244 303 64 92 chr11 62263751 62263860 -59579996 - PB1D9 SINE Alu -10 110 5 5 1060 1188 68 0 0 chr11 62263982 62264130 -59579726 + B1_Mus1 SINE Alu 1 148 0 5 1060 274 231 114 101 chr11 62264151 62264167 -59579689 + B4 SINE B4 69 219 -73 5 1060 598 180 24 0 chr11 62264167 62264300 -59579556 + B1_Mur4 SINE Alu 1 143 -7 5 1060 849 206 132 5 chr11 62264628 62264818 -59579038 + B3 SINE B2 3 216 0 5 1060 901 144 0 52 chr11 62264981 62265135 -59578721 + B1_Mur4 SINE Alu 1 146 -4 5 1060 1641 31 0 0 chr11 62265275 62265466 -59578390 + B2_Mm1t SINE B2 2 192 -1 5 1060 336 83 0 0 chr11 62265955 62266003 -59577853 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 5 1060 204 67 0 0 chr11 62266012 62266042 -59577814 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 1060 954 50 8 0 chr11 62266042 62266163 -59577693 - B1_Mus1 SINE Alu -1 147 26 6 1060 23 54 0 0 chr11 62266451 62266488 -59577368 + AT_rich Low_complexity Low_complexity 1 37 0 6 1060 339 271 109 35 chr11 62266682 62266812 -59577044 + PB1 SINE Alu 1 128 -21 6 1060 708 154 94 0 chr11 62266943 62267060 -59576796 - B1_Mur4 SINE Alu -21 129 2 6 1060 22 35 0 0 chr11 62267067 62267096 -59576760 + AT_rich Low_complexity Low_complexity 1 29 0 6 1060 202 167 16 48 chr11 62267141 62267204 -59576652 + A-rich Low_complexity Low_complexity 5 65 0 6 1060 751 226 82 34 chr11 62267506 62267712 -59576144 - B3 SINE B2 0 216 1 6 1060 1482 41 0 25 chr11 62267741 62267941 -59575915 + L1Md_F2 LINE L1 6381 6575 -7 6 1060 1323 60 37 31 chr11 62267969 62268160 -59575696 + B2_Mm2 SINE B2 4 195 0 6 1060 225 0 0 0 chr11 62268160 62268185 -59575671 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1060 456 241 0 28 chr11 62268201 62268323 -59575533 - B1_Mur1 SINE Alu -6 143 2 6 1060 782 239 106 10 chr11 62268506 62268705 -59575151 - ID_B1 SINE B4 -5 219 2 6 1060 242 294 153 30 chr11 62268733 62268871 -59574985 - MIR SINE MIR -81 181 37 6 1060 207 100 0 0 chr11 62269048 62269078 -59574778 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1060 757 159 8 23 chr11 62269079 62269208 -59574648 - B1_Mur4 SINE Alu 0 150 24 6 1060 296 222 40 109 chr11 62269125 62269226 -59574630 - MT2B LTR ERVL -343 258 165 6 1060 21 0 0 0 chr11 62269358 62269379 -59574477 + AT_rich Low_complexity Low_complexity 1 21 0 6 1060 207 0 0 0 chr11 62270028 62270051 -59573805 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1060 36 62 0 0 chr11 62270669 62270733 -59573123 + GC_rich Low_complexity Low_complexity 1 64 0 6 1060 275 238 141 16 chr11 62271548 62271676 -59572180 + B1F2 SINE Alu 2 145 -4 6 1060 285 167 61 0 chr11 62272873 62272939 -59570917 + L1ME1 LINE L1 6109 6178 -1 6 1060 1125 75 7 0 chr11 62273024 62273171 -59570685 - B1_Mus1 SINE Alu 0 148 1 6 1060 347 0 23 0 chr11 62273180 62273223 -59570633 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1060 1081 51 0 28 chr11 62273223 62273365 -59570491 - B1_Mm SINE Alu -9 138 1 6 1060 682 249 17 129 chr11 62273558 62273708 -59570148 - B3 SINE B2 -3 213 65 6 1060 767 146 46 0 chr11 62273708 62273838 -59570018 + B1_Mus1 SINE Alu 2 137 -11 6 1060 682 249 17 129 chr11 62273838 62273927 -59569929 - B3 SINE B2 -152 64 1 6 1060 840 79 165 8 chr11 62274083 62274210 -59569646 + B1_Mus2 SINE Alu 1 147 0 6 1060 1358 35 0 0 chr11 62274603 62274773 -59569083 + L1Md_F3 LINE L1 6415 6584 0 6 1060 576 239 48 27 chr11 62275213 62275359 -59568497 - RSINE1 SINE B4 -15 150 2 6 1060 584 278 75 54 chr11 62275363 62275549 -59568307 + B3A SINE B2 9 198 0 6 1060 1181 44 0 0 chr11 62275567 62275704 -59568152 + B1_Mm SINE Alu 2 138 -9 6 1060 189 0 0 0 chr11 62275704 62275725 -59568131 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 6 1060 985 130 0 0 chr11 62275729 62275875 -59567981 + B1_Mus2 SINE Alu 1 146 -1 6 1060 333 0 0 0 chr11 62275966 62276003 -59567853 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1060 1475 45 17 0 chr11 62276003 62276179 -59567677 - B2_Mm2 SINE B2 -15 180 2 6 1060 970 228 19 9 chr11 62276220 62276433 -59567423 - B3 SINE B2 0 216 2 6 1060 869 172 0 46 chr11 62276481 62276633 -59567223 + B1_Mur4 SINE Alu 3 147 -3 6 1060 424 317 94 27 chr11 62276711 62276860 -59566996 - RSINE1 SINE B4 -3 162 4 6 1060 252 0 0 0 chr11 62276942 62276970 -59566886 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1060 198 0 0 0 chr11 62277035 62277057 -59566799 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1060 237 229 27 67 chr11 62277192 62277267 -59566589 - ID4_ SINE ID -10 73 2 6 1060 298 276 137 1 chr11 62277271 62277355 -59566501 - PB1 SINE Alu -19 108 14 6 1060 778 251 107 30 chr11 62277709 62277980 -59565876 - B4A SINE B4 0 292 1 6 1060 374 353 87 45 chr11 62278136 62278445 -59565411 - MLT1G3 LTR MaLR -256 339 18 6 1060 309 293 131 0 chr11 62278952 62279051 -59564805 + ID_B1 SINE B4 100 211 -13 6 1060 917 207 60 15 chr11 62279177 62279378 -59564478 + B3 SINE B2 1 210 -6 6 1060 647 217 60 44 chr11 62279476 62279659 -59564197 + B4A SINE B4 39 224 -68 6 1060 621 164 36 0 chr11 62279679 62279789 -59564067 + B1_Mus2 SINE Alu 34 147 0 6 1060 914 237 31 5 chr11 62280510 62280705 -59563151 - B3 SINE B2 -13 203 4 6 1060 522 46 0 0 chr11 62280843 62280908 -59562948 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1060 310 211 337 0 chr11 62280908 62281003 -59562853 - RSINE1 SINE B4 -36 129 3 6 1060 1337 50 79 48 chr11 62281029 62281195 -59562661 + B2_Mm2 SINE B2 1 157 -38 6 1060 369 0 0 0 chr11 62281195 62281236 -59562620 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1060 1337 50 79 48 chr11 62281236 62281258 -59562598 + B2_Mm2 SINE B2 158 194 -1 6 1060 779 156 0 32 chr11 62281278 62281404 -59562452 + B1_Mur4 SINE Alu 16 137 -13 6 1060 218 32 32 0 chr11 62281404 62281435 -59562421 + (CAA)n Simple_repeat Simple_repeat 1 32 0 6 1060 962 74 27 7 chr11 62281473 62281622 -59562234 + B2_Mm2 SINE B2 2 153 -42 6 1060 476 266 0 53 chr11 62281652 62281783 -59562073 + ID_B1 SINE B4 96 219 -5 6 1060 436 129 19 29 chr11 62281804 62281908 -59561948 + GA-rich Low_complexity Low_complexity 3 105 0 6 1060 551 254 8 16 chr11 62281920 62282048 -59561808 + PB1 SINE Alu 1 127 0 6 1060 486 250 16 121 chr11 62282050 62282232 -59561624 + RSINE1 SINE B4 3 165 0 6 1060 560 235 0 11 chr11 62282403 62282569 -59561287 - ID_B1 SINE B4 -2 222 14 6 1060 327 315 53 8 chr11 62282819 62282950 -59560906 + Helitron1Na_Mam RC Helitron 686 822 -240 6 1060 568 279 22 0 chr11 62283107 62283243 -59560613 + B3A SINE B2 1 139 -59 6 1060 312 27 0 0 chr11 62283263 62283300 -59560556 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1060 1488 42 26 31 chr11 62283378 62283573 -59560283 - B2_Mm2 SINE B2 -1 194 1 6 1060 283 78 19 19 chr11 62283603 62283655 -59560201 + (TATG)n Simple_repeat Simple_repeat 4 55 0 6 1060 334 333 91 26 chr11 62283662 62283816 -59560040 - RSINE1 SINE B4 0 165 2 6 1060 1124 295 65 94 chr11 62283877 62283935 -59559921 - L1MB4 LINE L1 0 6180 6133 6 1060 1139 65 0 0 chr11 62283935 62284073 -59559783 - B1_Mus2 SINE Alu -9 138 1 6 1060 1124 295 65 94 chr11 62284073 62284347 -59559509 - L1MB4 LINE L1 -48 6132 5828 6 1060 629 240 28 142 chr11 62284347 62284600 -59559256 - ID_B1 SINE B4 0 224 1 6 1060 1124 295 65 94 chr11 62284600 62284838 -59559018 - L1MB4 LINE L1 -353 5827 5590 6 1060 688 105 237 0 chr11 62284838 62284952 -59558904 + B1_Mur1 SINE Alu 2 142 -7 6 1060 1124 295 65 94 chr11 62284952 62285191 -59558665 - L1MB4 LINE L1 -591 5589 5400 6 1060 623 167 124 8 chr11 62285821 62285942 -59557914 + B1_Mur2 SINE Alu 2 136 -13 6 1060 204 97 0 0 chr11 62285942 62285973 -59557883 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 6 1060 2380 172 22 10 chr11 62285982 62286398 -59557458 - MTC LTR MaLR 0 421 1 6 1060 702 65 0 0 chr11 62286549 62286641 -59557215 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 6 1060 233 236 68 27 chr11 62287124 62287198 -59556658 - ID_B1 SINE B4 -52 172 96 6 1060 257 256 60 82 chr11 62287278 62287461 -59556395 - L1MC5 LINE L1 -1171 6790 6612 6 1060 397 271 98 0 chr11 62287551 62287673 -59556183 + B1_Mus1 SINE Alu 1 134 -14 6 1060 411 113 0 0 chr11 62287673 62287735 -59556121 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1060 1204 68 0 0 chr11 62287754 62287902 -59555954 - B1_Mus1 SINE Alu 0 148 1 6 1060 292 172 69 0 chr11 62287902 62287960 -59555896 + MurSatRep1 Unknown Unknown 205 266 -1871 6 1060 243 311 106 81 chr11 62288048 62288209 -59555647 + B4A SINE B4 5 169 -123 6 1060 1079 75 0 13 chr11 62288235 62288384 -59555472 + B1_Mm SINE Alu 1 147 0 6 1060 447 234 0 21 chr11 62288418 62288514 -59555342 - B1_Mur2 SINE Alu -1 148 55 6 1060 261 57 0 0 chr11 62288643 62288678 -59555178 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1060 384 302 25 25 chr11 62288701 62288823 -59555033 - B4A SINE B4 -170 122 1 6 1060 49 0 0 0 chr11 62288916 62288965 -59554891 + AT_rich Low_complexity Low_complexity 1 49 0 6 1060 225 0 0 0 chr11 62288965 62288990 -59554866 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1060 725 215 43 0 chr11 62289027 62289190 -59554666 - MTD LTR MaLR -232 187 18 6 1060 503 202 171 11 chr11 62289279 62289454 -59554402 - MLT1A LTR MaLR -4 370 168 6 1060 256 351 18 0 chr11 62289786 62289900 -59553956 - MIR SINE MIR -116 146 31 6 1060 186 43 0 0 chr11 62290372 62290395 -59553461 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1060 1128 55 0 0 chr11 62290490 62290636 -59553220 - B2_Mm2 SINE B2 -46 149 4 6 1060 606 122 20 0 chr11 62290644 62290742 -59553114 - B1_Mus2 SINE Alu -1 146 47 6 1060 1522 202 82 11 chr11 62290747 62291113 -59552743 + MTD LTR MaLR 28 419 0 6 1060 432 250 120 8 chr11 62291239 62291364 -59552492 + B1F SINE Alu 11 149 0 6 1060 565 241 88 0 chr11 62291368 62291505 -59552351 + B1_Mur2 SINE Alu 1 149 0 6 1060 309 295 59 44 chr11 62291521 62291656 -59552200 + B4 SINE B4 68 204 -88 6 1060 713 126 35 49 chr11 62291544 62291686 -59552170 + B1_Mur4 SINE Alu 9 148 -2 6 1060 183 186 0 0 chr11 62291704 62291747 -59552109 + A-rich Low_complexity Low_complexity 1 43 0 7 1060 390 205 26 0 chr11 62292034 62292112 -59551744 - ID4 SINE ID 0 83 4 7 1060 954 293 25 58 chr11 62292887 62293213 -59550643 - MTEa LTR MaLR -43 336 22 7 1060 548 238 47 8 chr11 62293220 62293347 -59550509 + RSINE1 SINE B4 2 133 -32 7 1060 1250 48 0 0 chr11 62293428 62293575 -59550281 + B1_Mus1 SINE Alu 2 148 0 7 1060 737 110 8 0 chr11 62293592 62293710 -59550146 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 7 1060 553 266 36 0 chr11 62293752 62293891 -59549965 - RSINE1 SINE B4 -18 147 4 7 1060 228 161 45 75 chr11 62293896 62293963 -59549893 - B1_Mur1 SINE Alu -1 148 84 7 1060 1446 189 63 100 chr11 62294169 62294568 -59549288 + ORR1C2 LTR MaLR 1 384 0 7 1060 1162 56 0 0 chr11 62294720 62294862 -59548994 + B1_Mus1 SINE Alu 2 143 -5 7 1060 190 0 32 32 chr11 62294866 62294897 -59548959 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 1060 339 256 0 37 chr11 62295009 62295090 -59548766 + PB1D10 SINE Alu 14 91 -26 7 1060 375 178 0 0 chr11 62295087 62295160 -59548696 - MTD LTR MaLR -5 414 342 7 1060 351 203 0 0 chr11 62295204 62295278 -59548578 + CT-rich Low_complexity Low_complexity 2 75 0 7 1060 916 142 13 7 chr11 62295278 62295427 -59548429 - B1_Mur4 SINE Alu 0 150 1 7 1060 761 234 0 6 chr11 62295427 62295590 -59548266 - MTD LTR MaLR -210 209 48 7 1060 1249 81 103 0 chr11 62295590 62295764 -59548092 + B2_Mm1t SINE B2 1 192 -1 7 1060 1224 99 35 0 chr11 62295774 62295946 -59547910 + B2_Mm1t SINE B2 2 179 -14 7 1060 369 122 0 5 chr11 62295977 62296042 -59547814 + B2_Mm2 SINE B2 47 109 -107 7 1060 23 33 0 0 chr11 62296056 62296086 -59547770 + AT_rich Low_complexity Low_complexity 1 30 0 7 1060 813 43 248 0 chr11 62296110 62296227 -59547629 + B1_Mus1 SINE Alu 3 148 0 7 1060 525 281 66 0 chr11 62296342 62296509 -59547347 + B3 SINE B2 1 178 -38 7 1060 1245 34 0 0 chr11 62296552 62296698 -59547158 + B1_Mm SINE Alu 2 147 0 7 1060 1096 267 25 31 chr11 62296800 62297117 -59546739 - RLTR18B LTR ERVK -6 506 192 7 1060 207 0 0 0 chr11 62297119 62297142 -59546714 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1060 201 74 0 0 chr11 62297148 62297175 -59546681 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1060 1063 97 96 6 chr11 62297287 62297453 -59546403 - B2_Mm2 SINE B2 -14 181 1 7 1060 879 261 4 60 chr11 62297549 62297830 -59546026 - RLTR18 LTR ERVK -336 280 16 7 1060 481 261 101 50 chr11 62297844 62298042 -59545814 + B4A SINE B4 16 223 -69 7 1060 201 162 27 0 chr11 62298096 62298133 -59545723 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1060 1271 88 50 0 chr11 62298343 62298525 -59545331 + B2_Mm1t SINE B2 3 193 0 7 1060 719 89 9 0 chr11 62298538 62298650 -59545206 + B1_Mur3 SINE Alu 37 149 0 7 1060 200 79 53 0 chr11 62298650 62298688 -59545168 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 7 1060 741 150 247 40 chr11 62298697 62298871 -59544985 + B3 SINE B2 1 210 -6 7 1060 263 292 37 9 chr11 62298898 62299005 -59544851 + PB1D9 SINE Alu 8 117 -3 7 1060 710 239 15 61 chr11 62299005 62299201 -59544655 - B3A SINE B2 -7 191 5 7 1060 230 273 0 0 chr11 62299201 62299256 -59544600 - B3A SINE B2 -143 55 1 7 1060 221 188 41 55 chr11 62299256 62299329 -59544527 + CT-rich Low_complexity Low_complexity 2 73 0 7 1060 213 206 101 76 chr11 62299331 62299410 -59544446 - ID4_ SINE ID -1 82 2 7 1060 22 35 0 0 chr11 62299541 62299570 -59544286 + AT_rich Low_complexity Low_complexity 1 29 0 7 1060 1198 48 14 0 chr11 62299657 62299803 -59544053 - B1_Mus1 SINE Alu 0 148 1 7 1060 773 125 8 0 chr11 62299818 62299938 -59543918 + B1_Mur4 SINE Alu 23 143 -7 7 1060 207 0 0 0 chr11 62299938 62299961 -59543895 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1060 623 217 6 0 chr11 62299961 62300118 -59543738 + (TAGA)n Simple_repeat Simple_repeat 3 160 0 7 1060 700 183 144 27 chr11 62300122 62300268 -59543588 + RSINE1 SINE B4 2 164 -1 7 1060 569 251 39 24 chr11 62300288 62300469 -59543387 - B3 SINE B2 -1 197 1 7 1060 534 235 0 25 chr11 62300498 62300616 -59543240 + PB1D10 SINE Alu 2 116 -1 7 1060 341 242 54 15 chr11 62300838 62300968 -59542888 + MER53 DNA hAT 25 159 -34 7 1060 408 270 20 87 chr11 62300971 62301121 -59542735 - B1F SINE Alu 0 149 10 7 1060 489 104 0 0 chr11 62301337 62301414 -59542442 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1060 387 258 246 16 chr11 62301419 62301541 -59542315 - RSINE1 SINE B4 -13 152 3 7 1060 713 188 23 0 chr11 62301843 62301976 -59541880 + RSINE1 SINE B4 2 137 -28 7 1060 21 0 0 0 chr11 62301991 62302012 -59541844 + AT_rich Low_complexity Low_complexity 1 21 0 7 1060 255 176 0 0 chr11 62302018 62302038 -59541818 + A-rich Low_complexity Low_complexity 1 20 0 7 1060 1185 41 14 0 chr11 62302038 62302184 -59541672 + B1_Mus1 SINE Alu 1 148 0 7 1060 255 176 0 0 chr11 62302184 62302237 -59541619 + A-rich Low_complexity Low_complexity 21 73 0 7 1060 719 262 62 14 chr11 62302239 62302448 -59541408 + ID_B1 SINE B4 3 221 -3 7 1060 180 0 0 0 chr11 62302553 62302573 -59541283 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1060 1229 54 0 0 chr11 62302573 62302720 -59541136 - B1_Mus2 SINE Alu 0 147 1 7 1060 565 51 0 0 chr11 62303396 62303474 -59540382 - B1_Mus2 SINE Alu 0 147 70 7 1060 787 186 13 27 chr11 62303913 62304062 -59539794 + B1_Mus1 SINE Alu 2 148 0 7 1060 365 200 44 11 chr11 62304129 62304220 -59539636 + ID_B1 SINE B4 129 222 -2 7 1060 863 197 0 0 chr11 62304280 62304427 -59539429 + B1_Mur3 SINE Alu 1 147 -2 7 1060 235 118 58 19 chr11 62304427 62304479 -59539377 + GA-rich Low_complexity Low_complexity 1 54 0 7 1060 415 236 139 30 chr11 62304502 62304668 -59539188 + ID_B1 SINE B4 28 211 -13 7 1060 720 152 17 0 chr11 62304673 62304791 -59539065 - B1_Mur4 SINE Alu -29 121 2 7 1060 965 65 64 14 chr11 62304965 62305105 -59538751 + B1_Mm SINE Alu 1 147 0 7 1060 672 36 0 0 chr11 62305117 62305200 -59538656 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 7 1060 211 371 0 0 chr11 62305516 62305578 -59538278 - ID2 SINE ID -21 62 1 7 1060 186 103 0 0 chr11 62305727 62305756 -59538100 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 7 1060 489 97 12 36 chr11 62305756 62305839 -59538017 - B1_Mur3 SINE Alu -13 136 56 7 1060 1131 57 0 0 chr11 62306040 62306181 -59537675 + B1_Mus2 SINE Alu 1 141 -6 7 1060 219 36 0 0 chr11 62306183 62306211 -59537645 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1060 959 219 14 28 chr11 62306316 62306528 -59537328 - B3 SINE B2 -5 211 3 7 1060 543 151 11 0 chr11 62306946 62307049 -59536807 + B1_Mus1 SINE Alu 9 116 -33 7 1060 730 85 244 8 chr11 62307239 62307358 -59536498 - B1_Mus2 SINE Alu 0 147 1 7 1060 726 140 63 179 chr11 62307715 62307881 -59535975 - URR1A DNA MER1_type -3 223 79 7 1060 884 177 7 7 chr11 62307881 62308029 -59535827 + B1_Mur4 SINE Alu 1 148 -2 7 1060 726 140 63 179 chr11 62308029 62308114 -59535742 - URR1A DNA MER1_type -148 78 1 7 1060 552 65 0 0 chr11 62309027 62309104 -59534752 + (TCC)n Simple_repeat Simple_repeat 2 78 0 7 1060 1081 62 0 33 chr11 62310093 62310244 -59533612 - B1_Mus2 SINE Alu 0 147 2 7 1060 213 229 62 0 chr11 62310498 62310546 -59533310 - PB1D10 SINE Alu -31 86 36 7 1060 525 309 81 76 chr11 62310623 62311016 -59532840 - Lx8 LINE L1 -8 7465 7071 7 1060 558 169 138 0 chr11 62311022 62311152 -59532704 + B1_Mur1 SINE Alu 2 149 0 7 1060 185 65 0 31 chr11 62311160 62311192 -59532664 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 7 1060 1370 87 11 16 chr11 62311245 62311433 -59532423 + B2_Mm2 SINE B2 2 188 -7 7 1060 737 278 5 27 chr11 62311480 62311665 -59532191 - B3A SINE B2 -17 181 1 7 1060 180 0 0 0 chr11 62311675 62311695 -59532161 + (TA)n Simple_repeat Simple_repeat 1 20 0 7 1060 684 204 255 0 chr11 62311733 62311890 -59531966 - B3 SINE B2 -17 199 3 7 1060 485 215 40 32 chr11 62312000 62312125 -59531731 + B3 SINE B2 88 213 -3 7 1060 1191 48 7 0 chr11 62312134 62312279 -59531577 - B1_Mus1 SINE Alu -1 147 2 7 1060 462 193 16 66 chr11 62312312 62312434 -59531422 + PB1D9 SINE Alu 4 119 -1 7 1060 596 312 0 0 chr11 62312448 62312605 -59531251 + RSINE1 SINE B4 3 159 -6 7 1060 386 143 14 0 chr11 62312945 62313015 -59530841 + B3 SINE B2 1 71 -145 7 1060 186 43 0 0 chr11 62313238 62313261 -59530595 + (TAA)n Simple_repeat Simple_repeat 3 25 0 7 1060 745 107 107 0 chr11 62313262 62313383 -59530473 - B2_Mm2 SINE B2 -60 135 2 7 1060 234 0 0 0 chr11 62313649 62313675 -59530181 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1060 357 335 178 6 chr11 62313675 62313849 -59530007 + B4A SINE B4 82 285 -7 7 1060 219 36 0 0 chr11 62314354 62314382 -59529474 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1060 716 191 7 7 chr11 62314508 62314645 -59529211 - B1F SINE Alu -7 142 6 7 1060 555 267 20 7 chr11 62314654 62314801 -59529055 - B1F2 SINE Alu 0 149 1 7 1060 1013 43 0 7 chr11 62314818 62314958 -59528898 + (GTTTG)n Simple_repeat Simple_repeat 1 139 0 7 1060 468 223 29 0 chr11 62314958 62315061 -59528795 - PB1D9 SINE Alu -13 107 2 8 1060 24 0 0 0 chr11 62315353 62315377 -59528479 + AT_rich Low_complexity Low_complexity 1 24 0 8 1060 354 126 14 0 chr11 62315388 62315453 -59528403 - B2_Mm2 SINE B2 -82 116 46 8 1060 825 113 8 0 chr11 62315477 62315601 -59528255 - B2_Mm1t SINE B2 -67 126 2 8 1060 477 208 31 0 chr11 62316019 62316115 -59527741 + RSINE1 SINE B4 16 114 -51 8 1060 365 0 22 0 chr11 62316115 62316160 -59527696 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1060 332 191 0 203 chr11 62316885 62317023 -59526833 + MT2B LTR ERVL 155 264 -337 8 1060 944 129 0 0 chr11 62316913 62317052 -59526804 + B1_Mur4 SINE Alu 6 144 -6 8 1060 396 158 0 0 chr11 62317057 62317133 -59526723 + A-rich Low_complexity Low_complexity 1 76 0 8 1060 905 141 271 0 chr11 62317657 62317827 -59526029 + B3 SINE B2 1 216 0 8 1060 487 171 123 9 chr11 62317971 62318077 -59525779 - PB1D9 SINE Alu -2 118 1 8 1060 183 80 0 0 chr11 62318231 62318256 -59525600 + (TCCTG)n Simple_repeat Simple_repeat 2 26 0 8 1060 652 188 55 0 chr11 62318274 62318402 -59525454 - B1_Mur2 SINE Alu -14 135 1 8 1060 839 132 0 0 chr11 62318630 62318759 -59525097 - B1_Mus2 SINE Alu -10 137 9 8 1060 418 168 0 120 chr11 62318665 62318773 -59525083 - MT2B LTR ERVL -344 257 163 8 1060 1254 48 0 0 chr11 62318795 62318942 -59524914 - B1_Mm SINE Alu 0 147 1 8 1060 353 250 0 12 chr11 62319161 62319242 -59524614 + ID4 SINE ID 2 81 -2 8 1060 422 237 57 41 chr11 62319425 62319548 -59524308 + ID_B1 SINE B4 80 204 -20 8 1060 221 0 0 33 chr11 62319553 62319583 -59524273 + (TAA)n Simple_repeat Simple_repeat 1 29 0 8 1060 415 221 164 0 chr11 62319807 62319947 -59523909 - RSINE1 SINE B4 0 165 3 8 1060 588 246 53 15 chr11 62319978 62320110 -59523746 + ID_B1 SINE B4 78 214 -10 8 1060 313 236 585 0 chr11 62320392 62320512 -59523344 - ID_B1 SINE B4 -10 214 25 8 1060 909 256 26 72 chr11 62320545 62320810 -59523046 + B4 SINE B4 36 288 -4 8 1060 202 128 26 0 chr11 62321042 62321081 -59522775 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 8 1060 710 22 0 0 chr11 62321703 62321793 -59522063 - L1Md_T LINE L1 -1 6581 6492 8 1060 1502 73 5 0 chr11 62321793 62321985 -59521871 - B2_Mm1a SINE B2 0 193 1 8 1060 3964 51 38 28 chr11 62322096 62322603 -59521253 - LTRIS3 LTR ERV1 0 512 1 8 1060 2070 164 57 15 chr11 62322605 62323007 -59520849 + MTD LTR MaLR 1 419 0 8 1060 433 238 171 23 chr11 62323526 62323702 -59520154 + B3 SINE B2 4 205 -11 8 1060 791 273 64 0 chr11 62323709 62323973 -59519883 + MER2 DNA MER2_type 60 340 -5 8 1060 4454 162 110 15 chr11 62324253 62325260 -59518596 - RLTR25A LTR ERVK 0 1103 1 8 1060 213 209 0 0 chr11 62325289 62325332 -59518524 - PB1D7 SINE Alu -76 44 2 8 1060 1180 75 0 0 chr11 62325943 62326090 -59517766 + B1_Mus2 SINE Alu 1 147 0 8 1060 653 241 83 18 chr11 62326137 62326306 -59517550 + B3 SINE B2 3 182 -34 8 1060 1440 64 27 0 chr11 62327436 62327623 -59516233 - B2_Mm1a SINE B2 0 193 2 8 1060 768 214 28 0 chr11 62327727 62327872 -59515984 + B1_Mur2 SINE Alu 1 149 0 8 1060 556 310 78 9 chr11 62328110 62328429 -59515427 + RMER5 LTR ERV1 33 373 -161 8 1060 204 243 0 26 chr11 62328441 62328517 -59515339 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1060 366 270 0 33 chr11 62328536 62328720 -59515136 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1060 366 270 0 33 chr11 62328739 62328923 -59514933 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1060 384 267 0 32 chr11 62328942 62329128 -59514728 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1060 558 210 62 7 chr11 62329297 62329441 -59514415 + RMER5 LTR ERV1 383 534 0 8 1060 493 231 19 0 chr11 62329672 62329780 -59514076 + ID_B1 SINE B4 112 221 -3 8 1060 1610 190 131 23 chr11 62329878 62330274 -59513582 - RCHARR1 DNA MER1_type -1 973 528 8 1060 1169 60 155 0 chr11 62330274 62330442 -59513414 - B2_Mm2 SINE B2 0 195 2 8 1060 1610 190 131 23 chr11 62330442 62330487 -59513369 - RCHARR1 DNA MER1_type -447 527 484 8 1060 279 0 0 0 chr11 62330512 62330543 -59513313 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1060 230 202 322 11 chr11 62330543 62330633 -59513223 - RSINE1 SINE B4 -41 124 7 8 1060 762 294 61 65 chr11 62330720 62330751 -59513105 - RCHARR1 DNA MER1_type -477 497 469 8 1060 1064 239 0 5 chr11 62330751 62330965 -59512891 + B3 SINE B2 1 213 -3 8 1060 762 294 61 65 chr11 62330965 62331391 -59512465 - RCHARR1 DNA MER1_type -506 468 42 8 1060 1066 122 0 0 chr11 62331900 62332047 -59511809 + B1_Mur4 SINE Alu 1 147 -3 8 1060 180 0 0 0 chr11 62332083 62332103 -59511753 + (TAA)n Simple_repeat Simple_repeat 1 20 0 8 1060 338 88 0 34 chr11 62332103 62332162 -59511694 + B1_Mur2 SINE Alu 75 131 -18 8 1060 334 265 0 24 chr11 62332173 62332258 -59511598 + PB1D10 SINE Alu 34 116 -1 8 1060 699 237 46 23 chr11 62332622 62332838 -59511018 + ID_B1 SINE B4 4 224 0 8 1060 1275 51 97 0 chr11 62332870 62333046 -59510810 + B2_Mm2 SINE B2 3 195 0 8 1060 1432 70 11 5 chr11 62333170 62333358 -59510498 + B2_Mm1t SINE B2 1 189 -4 8 1060 221 114 247 91 chr11 62333569 62333646 -59510210 + PB1D9 SINE Alu 32 120 0 8 1060 208 147 0 0 chr11 62333646 62333680 -59510176 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 8 1060 359 239 97 0 chr11 62333763 62333876 -59509980 + B3A SINE B2 2 125 -73 8 1060 453 62 0 0 chr11 62333905 62333970 -59509886 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1060 1250 82 0 62 chr11 62333991 62334052 -59509804 - B2_Mm2 SINE B2 -11 184 134 8 1060 4435 12 0 0 chr11 62334052 62334534 -59509322 + LTRIS_Mm LTR ERV1 1 482 0 8 1060 1250 82 0 62 chr11 62334534 62334666 -59509190 - B2_Mm2 SINE B2 -62 133 3 8 1060 450 226 28 28 chr11 62334828 62334937 -59508919 + PB1D10 SINE Alu 3 111 -6 8 1060 1318 50 65 27 chr11 62335003 62335189 -59508667 + B2_Mm2 SINE B2 1 193 -2 8 1060 1196 68 0 0 chr11 62335196 62335343 -59508513 + B1_Mus2 SINE Alu 1 147 0 8 1060 404 228 32 11 chr11 62335434 62335527 -59508329 + BC1_Mm scRNA scRNA 4 98 -54 8 1060 324 78 15 45 chr11 62335539 62335606 -59508250 + (AGGGGG)n Simple_repeat Simple_repeat 4 68 0 8 1060 1092 64 43 0 chr11 62335651 62335792 -59508064 + B1_Mus2 SINE Alu 1 147 0 8 1060 276 236 57 5 chr11 62336028 62336124 -59507732 + ORR1D1 LTR MaLR 256 358 -12 8 1060 180 125 0 0 chr11 62336219 62336251 -59507605 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1060 1203 61 0 0 chr11 62336309 62336456 -59507400 - B1_Mm SINE Alu 0 147 1 8 1060 1549 57 5 0 chr11 62336461 62336653 -59507203 - B2_Mm1t SINE B2 0 193 1 8 1060 712 91 0 10 chr11 62336749 62336849 -59507007 - B1_Mus2 SINE Alu 0 147 49 8 1060 2915 164 144 61 chr11 62336849 62337522 -59506334 - RMER19B LTR ERVK -173 729 1 8 1060 436 289 42 56 chr11 62337528 62337671 -59506185 - B1F2 SINE Alu -1 148 8 8 1060 307 259 35 0 chr11 62337760 62337845 -59506011 - RSINE1 SINE B4 -34 131 44 8 1060 319 224 141 0 chr11 62338019 62338104 -59505752 + PB1D9 SINE Alu 4 100 -20 8 1060 288 288 0 14 chr11 62339058 62339132 -59504724 + ID4 SINE ID 1 73 -10 8 1060 709 88 289 0 chr11 62339339 62339453 -59504403 - B1_Mus1 SINE Alu 0 148 2 8 1060 630 228 102 78 chr11 62339748 62339953 -59503903 - B3 SINE B2 -6 210 1 8 1060 530 256 0 49 chr11 62339959 62340082 -59503774 - ID_B1 SINE B4 -1 223 107 8 1060 956 157 0 0 chr11 62340104 62340244 -59503612 - B1_Mur2 SINE Alu -5 144 5 8 1060 839 169 131 0 chr11 62340601 62340761 -59503095 - B3 SINE B2 0 216 36 8 1060 623 143 14 35 chr11 62341495 62341640 -59502216 + CT-rich Low_complexity Low_complexity 3 144 0 8 1060 246 306 0 16 chr11 62341640 62341703 -59502153 + MTD LTR MaLR 130 191 -228 8 1060 860 200 200 0 chr11 62341716 62341896 -59501960 - B3 SINE B2 0 216 1 8 1060 1286 72 0 67 chr11 62342038 62342232 -59501624 - B2_Mm2 SINE B2 -14 181 1 8 1060 219 69 0 0 chr11 62342245 62342274 -59501582 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 8 1060 4122 72 0 4 chr11 62342277 62342803 -59501053 - L1_Mus1 LINE L1 -1 6566 6043 8 1060 698 240 64 12 chr11 62342854 62343027 -59500829 + B3A SINE B2 1 182 -16 8 1060 1198 48 7 0 chr11 62343046 62343192 -59500664 + B1_Mus1 SINE Alu 1 147 -1 8 1060 383 150 431 41 chr11 62343323 62343469 -59500387 + B3 SINE B2 4 206 -10 8 1060 487 222 120 0 chr11 62343542 62343650 -59500206 + ID_B1 SINE B4 90 210 -14 8 1060 230 250 94 0 chr11 62343660 62343724 -59500132 + B3 SINE B2 2 71 -145 8 1060 336 246 44 67 chr11 62343807 62343942 -59499914 + RLTR12B LTR ERVK 385 516 -12 8 1060 367 285 6 116 chr11 62343928 62344086 -59499770 + B3A SINE B2 74 210 -6 8 1060 963 182 193 0 chr11 62344112 62344293 -59499563 - B3 SINE B2 0 216 1 8 1060 26 0 0 0 chr11 62344293 62344319 -59499537 + AT_rich Low_complexity Low_complexity 1 26 0 8 1060 438 258 10 0 chr11 62344330 62344427 -59499429 - B3 SINE B2 -9 207 110 8 1060 25 31 0 0 chr11 62344457 62344489 -59499367 + AT_rich Low_complexity Low_complexity 1 32 0 8 1060 220 197 78 78 chr11 62344498 62344575 -59499281 - B3 SINE B2 -137 79 3 8 1060 336 179 0 0 chr11 62344785 62344841 -59499015 + ORR1B1 LTR MaLR 1 56 -338 8 1060 186 71 0 0 chr11 62344888 62344916 -59498940 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1060 1140 15 73 0 chr11 62344917 62345053 -59498803 - B1_Mm SINE Alu 0 147 2 8 1060 279 250 0 45 chr11 62345054 62345121 -59498735 - MTB_Mm LTR MaLR -329 78 15 8 1060 696 188 83 0 chr11 62345244 62345377 -59498479 - B1_Mur2 SINE Alu -5 144 1 8 1060 886 184 48 0 chr11 62345542 62345710 -59498146 - B3 SINE B2 -17 199 24 8 1060 248 161 35 18 chr11 62345954 62346011 -59497845 - B1_Mur3 SINE Alu 0 149 92 9 1060 988 194 14 41 chr11 62346055 62346284 -59497572 - MTC LTR MaLR -194 213 1 9 1060 294 289 70 30 chr11 62346343 62346443 -59497413 + PB1 SINE Alu 20 123 -4 9 1060 416 218 6 12 chr11 62346494 62346579 -59497277 + ID SINE ID 1 82 -83 9 1060 219 277 0 0 chr11 62346814 62346861 -59496995 + B1F2 SINE Alu 6 52 -97 9 1060 335 367 26 20 chr11 62346909 62347062 -59496794 + RSINE1 SINE B4 2 155 -10 9 1060 225 284 0 95 chr11 62347188 62347203 -59496653 + B4A SINE B4 78 85 -207 9 1060 287 291 0 0 chr11 62347203 62347290 -59496566 + B1F1 SINE Alu 1 87 -30 9 1060 629 257 163 6 chr11 62348064 62348236 -59495620 + B3 SINE B2 11 209 -7 9 1060 269 185 242 15 chr11 62348311 62348377 -59495479 - ID_B1 SINE B4 -1 223 143 9 1060 786 229 62 21 chr11 62348376 62348568 -59495288 - ID_B1 SINE B4 -1 223 24 9 1060 1332 36 12 6 chr11 62348873 62349041 -59494815 + B2_Mm2 SINE B2 7 175 -20 9 1060 436 32 0 31 chr11 62349993 62350057 -59493799 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1060 396 0 0 0 chr11 62350230 62350274 -59493582 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 9 1060 270 0 0 0 chr11 62350754 62350784 -59493072 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1060 758 181 0 15 chr11 62351111 62351246 -59492610 - ID_B1 SINE B4 0 224 92 9 1060 470 238 0 19 chr11 62351296 62351403 -59492453 - PB1D10 SINE Alu -12 105 1 9 1060 206 205 0 0 chr11 62352565 62352604 -59491252 + C-rich Low_complexity Low_complexity 3 41 0 9 1060 266 243 129 0 chr11 62353207 62353277 -59490579 - ID2 SINE ID -3 80 2 9 1060 531 219 32 16 chr11 62353810 62353935 -59489921 - B1F1 SINE Alu 0 149 23 9 1060 625 261 7 7 chr11 62354067 62354206 -59489650 - B1F SINE Alu -4 145 7 9 1060 216 158 0 0 chr11 62354295 62354333 -59489523 + (TA)n Simple_repeat Simple_repeat 1 38 0 9 1060 830 212 201 34 chr11 62354355 62354589 -59489267 + MTD LTR MaLR 1 273 -146 9 1060 207 0 0 0 chr11 62354646 62354669 -59489187 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1060 696 280 42 25 chr11 62354674 62354912 -59488944 - B4A SINE B4 -19 273 32 9 1060 376 283 107 56 chr11 62354951 62355079 -59488777 - L1M5 LINE L1 -425 5739 5607 9 1060 337 240 58 29 chr11 62355079 62355182 -59488674 - PB1D10 SINE Alu -10 107 2 9 1060 376 283 107 56 chr11 62355182 62355427 -59488429 - L1M5 LINE L1 -558 5606 5347 9 1060 509 229 162 14 chr11 62355455 62355597 -59488259 + B3A SINE B2 36 198 0 9 1060 1481 175 99 3 chr11 62355637 62355929 -59487927 - MTD LTR MaLR 0 419 100 9 1060 1292 184 57 0 chr11 62355931 62356176 -59487680 - ORR1D1 LTR MaLR 0 374 116 9 1060 562 43 0 0 chr11 62356174 62356244 -59487612 + B1_Mus2 SINE Alu 78 147 0 9 1060 275 247 108 0 chr11 62356247 62356340 -59487516 + L1MB4 LINE L1 5937 6039 -141 9 1060 633 203 102 0 chr11 62356345 62356473 -59487383 - B1_Mur2 SINE Alu 0 149 9 9 1060 1198 95 0 12 chr11 62356498 62356668 -59487188 + B2_Mm2 SINE B2 1 168 -27 9 1060 651 223 33 0 chr11 62356688 62356809 -59487047 + ID_B1 SINE B4 71 195 -29 9 1060 1233 125 16 5 chr11 62356855 62357040 -59486816 + B2_Mm2 SINE B2 1 187 -8 9 1060 499 264 42 30 chr11 62357062 62357230 -59486626 + B3A SINE B2 24 193 -5 9 1060 380 229 8 132 chr11 62357319 62357440 -59486416 + MT2B LTR ERVL 152 257 -344 9 1060 910 180 0 20 chr11 62357335 62357488 -59486368 + B1_Mur4 SINE Alu 1 150 0 9 1060 22 0 0 0 chr11 62357497 62357519 -59486337 + AT_rich Low_complexity Low_complexity 1 22 0 9 1060 1094 211 29 0 chr11 62357543 62357751 -59486105 + B3 SINE B2 1 214 -2 9 1060 667 186 50 7 chr11 62357753 62357894 -59485962 + B1_Mus2 SINE Alu 1 147 0 9 1060 506 213 45 36 chr11 62358474 62358586 -59485270 + RSINE1 SINE B4 7 119 -46 9 1060 1490 54 5 0 chr11 62358611 62358796 -59485060 - B2_Mm1a SINE B2 -7 186 1 9 1060 1583 38 0 11 chr11 62358821 62359009 -59484847 - B2_Mm1a SINE B2 -6 187 2 9 1060 4163 148 99 72 chr11 62359011 62359870 -59483986 - RMER19B LTR ERVK -18 884 3 9 1060 288 0 0 0 chr11 62359870 62359902 -59483954 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1060 28 43 0 65 chr11 62359902 62359926 -59483930 + AT_rich Low_complexity Low_complexity 1 23 0 9 1060 252 0 0 0 chr11 62359926 62359954 -59483902 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1060 28 43 0 65 chr11 62359954 62359978 -59483878 + AT_rich Low_complexity Low_complexity 1 23 0 9 1060 288 0 0 0 chr11 62359978 62360010 -59483846 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1060 28 43 0 65 chr11 62360010 62360034 -59483822 + AT_rich Low_complexity Low_complexity 1 23 0 9 1060 252 0 0 0 chr11 62360034 62360062 -59483794 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1060 28 43 0 65 chr11 62360062 62360086 -59483770 + AT_rich Low_complexity Low_complexity 1 23 0 9 1060 288 0 0 0 chr11 62360086 62360118 -59483738 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1060 28 43 0 65 chr11 62360118 62360141 -59483715 + AT_rich Low_complexity Low_complexity 1 23 0 9 1060 305 236 88 70 chr11 62360171 62360281 -59483575 + PB1D7 SINE Alu 7 118 -2 9 1060 1663 31 0 10 chr11 62360326 62360519 -59483337 - B2_Mm1a SINE B2 -1 192 2 9 1060 570 290 86 49 chr11 62360556 62360719 -59483137 - B3A SINE B2 -6 192 24 9 1060 554 190 40 65 chr11 62360712 62360836 -59483020 + B1_Mur1 SINE Alu 29 149 0 9 1060 210 217 13 127 chr11 62360924 62361003 -59482853 - B1F SINE Alu -6 143 74 9 1060 262 227 182 0 chr11 62361052 62361118 -59482738 - ID SINE ID -142 82 5 9 1060 626 233 0 36 chr11 62361129 62361267 -59482589 - B1F SINE Alu -1 148 16 9 1060 428 212 23 12 chr11 62361383 62361469 -59482387 - B3A SINE B2 -111 87 1 9 1060 21 0 0 0 chr11 62361469 62361490 -59482366 + AT_rich Low_complexity Low_complexity 1 21 0 9 1060 731 191 0 195 chr11 62361718 62361959 -59481897 + B3A SINE B2 1 194 -4 9 1060 1284 122 11 0 chr11 62361962 62362150 -59481706 + B2_Mm1t SINE B2 2 191 -2 9 1060 209 252 97 39 chr11 62362284 62362387 -59481469 - L3 LINE CR1 -2291 2198 2090 9 1060 774 199 0 8 chr11 62362470 62362602 -59481254 + ID_B1 SINE B4 91 221 -3 9 1060 309 331 20 73 chr11 62362602 62362613 -59481243 - YREP_Mm Unknown Unknown -1499 268 172 9 1060 442 158 139 0 chr11 62362633 62362734 -59481122 - PB1D9 SINE Alu 0 120 6 9 1060 377 161 11 90 chr11 62362761 62362850 -59481006 + B1_Mur3 SINE Alu 16 97 -52 9 1060 604 240 186 6 chr11 62363036 62363208 -59480648 + B3 SINE B2 6 208 -8 9 1060 515 248 77 8 chr11 62363235 62363365 -59480491 + B1_Mur1 SINE Alu 2 140 -9 9 1060 1107 82 0 14 chr11 62367327 62367475 -59476381 - B1_Mus2 SINE Alu 0 147 2 9 1060 227 303 40 0 chr11 62367814 62367890 -59475966 - B4 SINE B4 -212 80 2 9 1060 235 326 71 64 chr11 62368021 62368038 -59475818 - B4 SINE B4 -70 222 135 9 1060 333 297 69 43 chr11 62368038 62368154 -59475702 - B1_Mur1 SINE Alu -28 121 3 9 1060 439 205 186 8 chr11 62368166 62368284 -59475572 - B1_Mur3 SINE Alu 0 149 11 9 1060 307 207 114 31 chr11 62368384 62368482 -59475374 + B1F1 SINE Alu 1 99 -18 9 1060 523 246 103 0 chr11 62368625 62368751 -59475105 + B1_Mur1 SINE Alu 10 148 -1 9 1060 770 194 15 7 chr11 62368767 62368902 -59474954 + B1_Mur4 SINE Alu 10 145 -5 9 1060 346 318 2 2 chr11 62369743 62369845 -59474011 + PB1D9 SINE Alu 2 103 -17 9 1060 1095 159 60 46 chr11 62369876 62370093 -59473763 + URR1B DNA MER1_type 6 225 0 9 1060 386 245 121 15 chr11 62370125 62370324 -59473532 + L1MA6 LINE L1 6081 6300 0 9 1060 1074 83 28 0 chr11 62370327 62370471 -59473385 + B1_Mus1 SINE Alu 1 148 0 9 1060 249 184 342 0 chr11 62370511 62370587 -59473269 + PB1D9 SINE Alu 19 120 0 9 1060 261 0 0 0 chr11 62370593 62370622 -59473234 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1060 316 272 145 46 chr11 62370622 62370753 -59473103 + ID_B1 SINE B4 81 224 0 9 1060 449 293 31 157 chr11 62370763 62370920 -59472936 + ID_B1 SINE B4 2 138 -86 9 1060 655 232 21 21 chr11 62370920 62371065 -59472791 + B1_Mus2 SINE Alu 2 146 -1 9 1060 449 293 31 157 chr11 62371065 62371162 -59472694 + ID_B1 SINE B4 139 224 0 9 1060 180 77 0 0 chr11 62371171 62371197 -59472659 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 1060 435 296 29 4 chr11 62371227 62371354 -59472502 + RSINE1 SINE B4 17 149 -16 9 1060 724 241 41 51 chr11 62371420 62371476 -59472380 - B3A SINE B2 -3 195 147 9 1060 486 0 0 0 chr11 62371476 62371530 -59472326 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1060 724 241 41 51 chr11 62371530 62371670 -59472186 - B3A SINE B2 -52 146 1 9 1060 205 209 0 29 chr11 62371670 62371739 -59472117 + GA-rich Low_complexity Low_complexity 6 72 0 9 1060 361 305 41 94 chr11 62372291 62372333 -59471523 - B3A SINE B2 -21 177 147 9 1060 324 0 0 0 chr11 62372333 62372369 -59471487 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1060 361 305 41 94 chr11 62372369 62372496 -59471360 - B3A SINE B2 -52 146 17 9 1060 482 262 80 60 chr11 62373052 62373202 -59470654 + B3A SINE B2 3 155 -43 9 1060 301 176 0 0 chr11 62373202 62373253 -59470603 + MurSatRep1 Unknown Unknown 234 284 -1853 9 1060 725 178 124 33 chr11 62373813 62373984 -59469872 + B3 SINE B2 4 188 -7 1 1060 498 209 0 181 chr11 62373994 62374187 -59469669 + FordPrefect DNA Tip100 797 954 -729 1 1060 261 145 0 0 chr11 62374526 62374588 -59469268 + (A)n Simple_repeat Simple_repeat 1 62 0 1 1060 393 241 221 9 chr11 62374889 62375002 -59468854 + RSINE1 SINE B4 12 148 -17 1 1060 1111 30 30 0 chr11 62375039 62375171 -59468685 + B1_Mus2 SINE Alu 2 137 -10 1 1060 231 61 0 0 chr11 62375171 62375204 -59468652 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1060 684 216 74 28 chr11 62375317 62375337 -59468519 + MERVL_2A-int LTR ERVL 1461 1480 -4281 1 1060 333 0 0 0 chr11 62375337 62375374 -59468482 + (CTG)n Simple_repeat Simple_repeat 2 38 0 1 1060 684 209 37 26 chr11 62375374 62375602 -59468254 + MERVL_2A-int LTR ERVL 1481 1759 -4002 1 1060 420 153 53 0 chr11 62375620 62375703 -59468153 - B1_Mur2 SINE Alu -21 126 42 1 1060 319 155 0 79 chr11 62375779 62375842 -59468014 - PB1D9 SINE Alu -61 59 2 1 1060 27 0 0 26 chr11 62375843 62375863 -59467993 + AT_rich Low_complexity Low_complexity 1 20 0 1 1060 1136 75 112 0 chr11 62375863 62376023 -59467833 - B2_Mm2 SINE B2 -16 179 2 1 1060 27 0 0 26 chr11 62376023 62376040 -59467816 + AT_rich Low_complexity Low_complexity 1 17 0 1 1060 894 249 29 14 chr11 62376043 62376251 -59467605 - B3 SINE B2 -5 211 1 1 1060 2718 214 58 17 chr11 62376251 62376968 -59466888 + MERVL_2A-int LTR ERVL 1740 2522 -3239 1 1060 1680 182 223 22 chr11 62376980 62377424 -59466432 + MT2A LTR ERVL 1 533 0 1 1060 788 268 42 28 chr11 62377457 62377672 -59466184 - ID_B1 SINE B4 0 224 7 1 1060 1155 191 29 17 chr11 62377729 62377968 -59465888 + RCHARR1 DNA MER1_type 500 741 -233 1 1060 316 18 54 0 chr11 62377962 62378018 -59465838 - B2_Mm2 SINE B2 0 195 137 1 1060 1257 113 11 0 chr11 62378108 62378285 -59465571 - B2_Mm1t SINE B2 -14 179 1 1 1060 729 213 66 75 chr11 62378285 62378370 -59465486 + RCHARR1 DNA MER1_type 725 808 -166 1 1060 904 151 7 27 chr11 62378370 62378520 -59465336 + B1_Mur3 SINE Alu 1 147 -2 1 1060 207 0 0 0 chr11 62378520 62378543 -59465313 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 1060 729 213 66 75 chr11 62378543 62378669 -59465187 + RCHARR1 DNA MER1_type 809 934 -40 1 1060 561 252 22 30 chr11 62378667 62378802 -59465054 + B1_Mur2 SINE Alu 11 144 -5 1 1060 466 83 0 0 chr11 62379177 62379237 -59464619 - B1_Mus2 SINE Alu -9 138 79 1 1060 558 0 0 0 chr11 62379237 62379299 -59464557 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 1 1060 499 77 0 0 chr11 62379304 62379369 -59464487 - B2_Mm1a SINE B2 -44 149 85 1 1060 259 263 0 66 chr11 62379492 62379614 -59464242 + G-rich Low_complexity Low_complexity 5 118 0 1 1060 360 195 0 0 chr11 62380213 62380229 -59463627 + polypyrimidine Low_complexity Low_complexity 70 85 0 1 1060 1440 44 0 0 chr11 62380229 62380409 -59463447 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1060 360 195 0 0 chr11 62380409 62380474 -59463382 + CT-rich Low_complexity Low_complexity 5 69 0 1 1060 186 43 0 0 chr11 62380473 62380496 -59463360 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1060 715 231 107 10 chr11 62380862 62381059 -59462797 + B3 SINE B2 1 216 0 1 1060 344 227 216 18 chr11 62381075 62381090 -59462766 + B4 SINE B4 70 201 -23 1 1060 604 140 0 0 chr11 62381090 62381183 -59462673 + B1_Mur4 SINE Alu 2 94 -56 1 1060 402 21 0 0 chr11 62381183 62381230 -59462626 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 1 1060 335 221 235 17 chr11 62381230 62381248 -59462608 + ID_B1 SINE B4 202 219 -5 1 1060 1738 16 0 0 chr11 62381531 62381723 -59462133 - B2_Mm1a SINE B2 0 193 2 1 1060 766 233 48 19 chr11 62381741 62381951 -59461905 - B3 SINE B2 0 216 1 1 1060 236 263 105 0 chr11 62382057 62382133 -59461723 + ID SINE ID 2 85 -139 1 1060 566 230 31 40 chr11 62382152 62382356 -59461500 - L1MB8 LINE L1 -270 5908 5630 1 1060 1353 106 32 0 chr11 62383116 62383304 -59460552 + B2_Mm2 SINE B2 2 195 0 1 1060 369 0 0 0 chr11 62383370 62383411 -59460445 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1060 493 211 82 66 chr11 62383417 62383539 -59460317 - B1_Mur1 SINE Alu -16 133 10 1 1060 611 67 11 0 chr11 62383760 62383849 -59460007 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1060 850 173 0 0 chr11 62383850 62383989 -59459867 - B1_Mus2 SINE Alu -8 139 1 1 1060 488 274 0 0 chr11 62384409 62384515 -59459341 - B1F SINE Alu -1 148 43 1 1060 941 188 93 10 chr11 62384548 62384742 -59459114 - B3 SINE B2 -6 210 1 1 1060 311 0 0 25 chr11 62384776 62384816 -59459040 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1060 1213 48 0 26 chr11 62384816 62384959 -59458897 - B1_Mus2 SINE Alu -6 141 1 1 1060 714 107 23 47 chr11 62384974 62385102 -59458754 - B1_Mur3 SINE Alu 0 149 25 1 1060 591 53 0 0 chr11 62385120 62385195 -59458661 + (TTCTCC)n Simple_repeat Simple_repeat 5 79 0 1 1060 1229 111 0 0 chr11 62385205 62385376 -59458480 - B2_Mm2 SINE B2 -20 175 5 1 1060 830 230 79 10 chr11 62385396 62385598 -59458258 - B3 SINE B2 0 216 1 1 1060 232 253 185 90 chr11 62385599 62385777 -59458079 - B3A SINE B2 -1 197 3 1 1060 251 304 247 4 chr11 62385940 62386124 -59457732 + MIRb SINE MIR 22 267 -9 1 1060 748 188 58 0 chr11 62386130 62386268 -59457588 - B1_Mur1 SINE Alu -2 147 2 1 1060 910 259 45 30 chr11 62386282 62386440 -59457416 - B3 SINE B2 -14 202 36 1 1060 1611 185 91 3 chr11 62386440 62386782 -59457074 - ORR1D1 LTR MaLR -2 372 1 1 1060 910 259 45 30 chr11 62386782 62386822 -59457034 - B3 SINE B2 -181 35 1 1 1060 505 324 0 42 chr11 62386864 62387006 -59456850 - RSINE1 SINE B4 -25 140 5 1 1060 1190 62 0 0 chr11 62387051 62387197 -59456659 + B1_Mus1 SINE Alu 3 148 0 1 1060 2215 48 0 7 chr11 62387218 62387492 -59456364 + L1Md_F2 LINE L1 6299 6570 -12 1 1060 351 0 0 0 chr11 62387587 62387626 -59456230 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1060 306 73 0 0 chr11 62388128 62388169 -59455687 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1060 228 326 21 53 chr11 62388261 62388355 -59455501 + B4A SINE B4 55 145 -147 1 1060 250 259 19 0 chr11 62388407 62388461 -59455395 + MER3 DNA MER1_type 155 209 0 1 1060 229 259 73 62 chr11 62388599 62388699 -59455157 - ID4 SINE ID -39 113 1 1 1061 183 330 31 31 chr11 62390443 62390540 -59453316 + MIR3 SINE MIR 95 191 -17 1 1061 359 84 35 46 chr11 62390874 62390929 -59452927 + T-rich Low_complexity Low_complexity 30 87 0 1 1061 614 108 242 0 chr11 62390929 62391049 -59452807 - B1_Mur2 SINE Alu 0 149 1 1 1061 359 84 35 46 chr11 62391049 62391080 -59452776 + T-rich Low_complexity Low_complexity 2 29 0 1 1061 565 274 148 16 chr11 62391092 62391348 -59452508 - B4A SINE B4 -1 291 2 1 1061 242 0 0 57 chr11 62391350 62391385 -59452471 + (TCTCCC)n Simple_repeat Simple_repeat 3 35 0 1 1061 256 311 161 72 chr11 62391387 62391486 -59452370 - ID_B1 SINE B4 0 224 105 1 1061 944 160 132 11 chr11 62391486 62391676 -59452180 - B3 SINE B2 0 216 4 1 1061 256 311 161 72 chr11 62391676 62391756 -59452100 - ID_B1 SINE B4 -120 104 29 1 1061 475 254 8 8 chr11 62393108 62393227 -59450629 - PB1D7 SINE Alu -1 119 1 1 1061 1078 103 0 0 chr11 62393285 62393431 -59450425 + B1_Mus1 SINE Alu 3 148 0 1 1061 729 129 0 0 chr11 62393431 62393547 -59450309 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 1 1061 258 215 152 83 chr11 62393677 62393809 -59450047 - MIRb SINE MIR -25 243 103 1 1061 296 244 25 37 chr11 62394245 62394326 -59449530 - ID4_ SINE ID -2 81 2 1 1061 749 161 105 84 chr11 62394839 62395020 -59448836 + B3 SINE B2 1 188 -7 1 1061 935 140 0 20 chr11 62395020 62395173 -59448683 + B1_Mur4 SINE Alu 1 150 0 1 1061 270 273 117 0 chr11 62395410 62395487 -59448369 - PB1D10 SINE Alu -29 88 3 1 1061 289 301 126 38 chr11 62395583 62395742 -59448114 - MIRb SINE MIR -27 241 69 1 1061 301 273 59 20 chr11 62395771 62395872 -59447984 - PB1D10 SINE Alu 0 117 13 1 1061 440 182 160 10 chr11 62395797 62395897 -59447959 - ID_B1 SINE B4 -54 170 56 1 1061 610 214 0 0 chr11 62395958 62396070 -59447786 + PB1D9 SINE Alu 7 118 -2 1 1061 345 278 22 0 chr11 62396659 62396749 -59447107 - MIRc SINE MIR -141 127 36 1 1061 297 200 0 0 chr11 62396892 62396947 -59446909 + tRNA-Ala-GCY_ tRNA tRNA 3 57 -18 1 1061 1158 107 55 17 chr11 62396948 62397129 -59446727 - B2_Mm2 SINE B2 -6 189 2 1 1061 263 296 0 14 chr11 62397129 62397144 -59446712 + BC1_Mm scRNA scRNA 65 79 -73 1 1061 591 139 0 19 chr11 62397232 62397335 -59446521 - B1_Mus2 SINE Alu 0 147 47 1 1061 326 151 173 27 chr11 62397279 62397354 -59446502 - MT2B LTR ERVL -344 257 172 1 1061 264 286 0 25 chr11 62397283 62397362 -59446494 - RLTR25A LTR ERVK -531 572 496 1 1061 207 0 0 0 chr11 62397485 62397508 -59446348 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1061 674 94 197 0 chr11 62397737 62397854 -59446002 - B1_Mus1 SINE Alu 0 148 9 1 1061 1239 314 31 19 chr11 62398495 62398976 -59444880 - Lx8 LINE L1 -306 7167 6681 1 1061 865 208 91 0 chr11 62399052 62399249 -59444607 - B3 SINE B2 -1 215 1 1 1061 1179 217 92 32 chr11 62399262 62399609 -59444247 - ORR1D2 LTR MaLR -2 368 1 1 1061 270 0 0 0 chr11 62399661 62399691 -59444165 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1061 731 208 0 0 chr11 62399691 62399821 -59444035 - B1_Mus1 SINE Alu -12 136 7 1 1061 589 202 9 0 chr11 62399898 62400012 -59443844 + B1_Mur1 SINE Alu 35 149 0 1 1061 430 263 61 0 chr11 62400125 62400224 -59443632 + PB1 SINE Alu 2 106 -21 1 1061 283 256 0 126 chr11 62400138 62400241 -59443615 + ID_B1 SINE B4 102 191 -33 1 1061 22 56 0 0 chr11 62400373 62400409 -59443447 + AT_rich Low_complexity Low_complexity 1 36 0 1 1061 887 181 115 0 chr11 62400413 62400595 -59443261 - B3 SINE B2 -10 206 4 1 1061 1119 260 115 53 chr11 62400629 62400986 -59442870 - MTE2b LTR MaLR 0 379 1 1 1061 459 324 27 48 chr11 62401166 62401312 -59442544 - RSINE1 SINE B4 0 165 23 1 1061 1172 192 9 0 chr11 62401422 62401636 -59442220 - B3 SINE B2 0 216 1 1 1061 846 106 42 14 chr11 62401873 62402016 -59441840 - B1_Mur4 SINE Alu -1 149 3 1 1061 314 78 321 62 chr11 62402031 62402143 -59441713 - B2_Mm2 SINE B2 -7 188 48 1 1061 1029 134 37 0 chr11 62402213 62402377 -59441479 - B2_Mm2 SINE B2 -25 170 1 1 1061 739 260 19 38 chr11 62402462 62402674 -59441182 + B3 SINE B2 2 209 -7 1 1061 425 357 33 9 chr11 62404002 62404217 -59439639 - MIR SINE MIR -15 247 28 1 1061 465 255 10 20 chr11 62405106 62405206 -59438650 - PB1 SINE Alu -28 99 1 1 1061 1347 149 22 9 chr11 62405263 62405493 -59438363 - MTC LTR MaLR -188 233 1 1 1061 285 29 0 0 chr11 62405672 62405706 -59438150 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1061 207 255 223 0 chr11 62406004 62406098 -59437758 - MIRb SINE MIR -59 209 95 1 1061 452 109 5 58 chr11 62406604 62406700 -59437156 - B1_Mur4 SINE Alu -29 91 1 1 1061 405 219 20 163 chr11 62406700 62406791 -59437065 - B4 SINE B4 -208 84 16 1 1061 1342 49 49 5 chr11 62407135 62407319 -59436537 + B2_Mm2 SINE B2 1 192 -3 1 1061 1095 68 0 0 chr11 62407324 62407470 -59436386 + B1_Mus1 SINE Alu 3 148 0 1 1061 259 243 0 14 chr11 62407762 62407833 -59436023 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1061 581 294 22 28 chr11 62407837 62408019 -59435837 - B4A SINE B4 -4 288 108 1 1061 369 109 0 0 chr11 62408052 62408116 -59435740 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1061 521 279 0 16 chr11 62408117 62408241 -59435615 - RSINE1 SINE B4 -41 124 3 1 1061 371 260 0 50 chr11 62408241 62408341 -59435515 - B4A SINE B4 -196 96 2 1 1061 295 317 0 12 chr11 62408915 62408998 -59434858 + MIR SINE MIR 162 243 -19 1 1061 406 291 0 10 chr11 62409034 62409138 -59434718 - PB1D7 SINE Alu -10 110 8 1 1061 270 295 112 27 chr11 62409673 62409868 -59433988 - RLTR16 LTR ERVK -285 283 36 1 1061 1333 29 103 0 chr11 62409868 62410043 -59433813 + B2_Mm1t SINE B2 1 193 0 1 1061 1154 54 0 0 chr11 62410065 62410213 -59433643 + B1_Mus1 SINE Alu 1 148 0 1 1061 226 87 21 21 chr11 62410571 62410618 -59433238 + (TGG)n Simple_repeat Simple_repeat 2 48 0 1 1061 204 40 0 0 chr11 62410973 62410998 -59432858 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1061 299 78 20 0 chr11 62411009 62411060 -59432796 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1061 261 0 0 0 chr11 62411060 62411088 -59432768 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1061 861 59 88 15 chr11 62411088 62411225 -59432631 - B2_Mm2 SINE B2 -46 149 3 1 1061 1187 48 0 0 chr11 62412677 62412823 -59431033 - B1_Mm SINE Alu 0 147 2 1 1061 1177 48 0 0 chr11 62413843 62413989 -59429867 + B1_Mm SINE Alu 2 147 0 1 1061 207 0 0 0 chr11 62413989 62414012 -59429844 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1061 580 230 197 45 chr11 62414579 62414843 -59429013 + RMER5 LTR ERV1 77 380 -154 1 1061 793 130 7 30 chr11 62414857 62414992 -59428864 + B1_Mus2 SINE Alu 9 140 -7 1 1061 412 165 76 34 chr11 62415028 62415147 -59428709 + RMER5 LTR ERV1 385 508 -26 1 1061 323 241 0 0 chr11 62415362 62415431 -59428425 - PB1D7 SINE Alu -8 112 41 1 1061 621 209 138 6 chr11 62415430 62415589 -59428267 - ID_B1 SINE B4 -16 208 29 1 1061 250 261 47 68 chr11 62415948 62416069 -59427787 - PB1 SINE Alu 0 117 1 1 1061 1232 68 68 0 chr11 62417296 62417473 -59426383 - B2_Mm1t SINE B2 -4 189 1 1 1061 235 209 104 0 chr11 62417522 62417589 -59426267 - B3 SINE B2 -103 113 40 1 1061 224 100 383 12 chr11 62417748 62417829 -59426027 + B1_Mus1 SINE Alu 38 148 0 1 1061 220 365 73 0 chr11 62420719 62420815 -59423041 - L2a LINE L2 -3 3423 3321 1 1061 378 265 0 79 chr11 62420946 62421062 -59422794 + PB1D10 SINE Alu 1 109 -8 1 1061 490 195 0 199 chr11 62421062 62421248 -59422608 + B1_Mur1 SINE Alu 1 149 0 1 1061 635 194 42 63 chr11 62421270 62421413 -59422443 + B1_Mus1 SINE Alu 9 148 0 1 1061 514 223 0 0 chr11 62421462 62421556 -59422300 + B3A SINE B2 2 95 -103 1 1061 915 119 33 0 chr11 62421588 62421739 -59422117 - URR1A DNA MER1_type -25 201 46 1 1061 869 206 65 5 chr11 62421820 62422020 -59421836 - B3 SINE B2 -4 212 1 1 1061 272 206 25 19 chr11 62422021 62422103 -59421753 + MTE2a LTR MaLR 3 89 -330 1 1061 296 271 43 23 chr11 62422279 62422427 -59421429 - PB1D10 SINE Alu -11 138 1 1 1061 246 329 12 12 chr11 62422368 62422448 -59421408 - B4A SINE B4 -147 145 66 1 1061 367 197 0 0 chr11 62423007 62423068 -59420788 - ID4_ SINE ID -10 73 13 1 1061 916 223 43 10 chr11 62423436 62423479 -59420377 - B3 SINE B2 0 216 174 1 1061 206 62 31 0 chr11 62423479 62423511 -59420345 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1061 916 223 43 10 chr11 62423511 62423675 -59420181 - B3 SINE B2 -43 173 2 1 1061 560 172 69 76 chr11 62423837 62423982 -59419874 - B1_Mur2 SINE Alu -5 144 1 1 1061 268 341 68 38 chr11 62424055 62424258 -59419598 - MIRb SINE MIR -16 260 42 1 1061 2114 141 77 23 chr11 62424258 62424700 -59419156 + RMER4A LTR ERVK 1 466 0 1 1061 187 388 92 18 chr11 62424700 62424714 -59419142 - MIRm SINE MIR -235 41 28 1 1061 780 251 144 25 chr11 62424904 62425182 -59418674 - MLT1B LTR MaLR -45 345 35 1 1061 761 102 0 0 chr11 62425205 62425313 -59418543 + B1_Mur4 SINE Alu 38 145 -5 1 1061 429 70 0 0 chr11 62425314 62425371 -59418485 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1061 203 245 0 20 chr11 62425506 62425556 -59418300 - MIR SINE MIR -61 147 99 1 1061 432 294 33 29 chr11 62426073 62426319 -59417537 + MTE2b LTR MaLR 18 331 -48 1 1061 624 268 95 110 chr11 62428904 62429348 -59414508 + RMER4A LTR ERVK 17 453 -13 1 1061 374 318 64 17 chr11 62429367 62429540 -59414316 + LTR33 LTR ERVL 10 190 -325 1 1061 287 218 76 13 chr11 62429676 62429755 -59414101 + MLT1F1 LTR MaLR 220 303 -266 1 1061 440 295 121 50 chr11 62429914 62430028 -59413828 + B4 SINE B4 94 223 -69 1 1061 2821 30 185 0 chr11 62430028 62430396 -59413460 + RLTR10C LTR ERVK 1 436 0 1 1061 440 295 121 50 chr11 62430396 62430463 -59413393 + B4 SINE B4 224 287 -5 1 1061 259 273 0 0 chr11 62430510 62430565 -59413291 + (CACG)n Simple_repeat Simple_repeat 1 55 0 1 1061 270 0 0 0 chr11 62430639 62430669 -59413187 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1061 633 162 35 35 chr11 62430669 62430784 -59413072 - B1_Mur1 SINE Alu -13 136 22 1 1061 618 131 150 39 chr11 62430869 62430996 -59412860 - B1_Mur3 SINE Alu -7 142 2 1 1061 509 300 62 10 chr11 62431112 62431304 -59412552 + ORR1E LTR MaLR 26 227 -132 1 1061 381 136 0 0 chr11 62431456 62431522 -59412334 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 1 1061 1226 14 7 0 chr11 62431526 62431672 -59412184 - B1_Mm SINE Alu 0 147 1 1 1061 581 180 113 38 chr11 62431672 62431800 -59412056 + RLTR20C LTR ERVK 14 152 -382 1 1061 1120 69 7 0 chr11 62431800 62431945 -59411911 + B1_Mus1 SINE Alu 2 147 -1 1 1061 1060 223 67 20 chr11 62432124 62432466 -59411390 + RLTR20C LTR ERVK 179 527 -50 1 1061 434 316 162 13 chr11 62432948 62433182 -59410674 + MLT1A0 LTR MaLR 73 341 -24 1 1061 1244 98 38 0 chr11 62434271 62434454 -59409402 - B2_Mm2 SINE B2 -5 190 1 1 1061 3051 41 3 0 chr11 62434841 62435233 -59408623 + MTA_Mm LTR MaLR 1 393 -3 1 1061 192 40 0 0 chr11 62435669 62435694 -59408162 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1061 1149 34 7 7 chr11 62435696 62435843 -59408013 - B1_Mus2 SINE Alu 0 147 1 1 1061 1506 52 0 15 chr11 62436025 62436221 -59407635 + B2_Mm1t SINE B2 1 193 0 1 1061 201 176 0 0 chr11 62436258 62436292 -59407564 + A-rich Low_complexity Low_complexity 1 34 0 1 1061 185 311 49 0 chr11 62436621 62436682 -59407174 + MIRc SINE MIR 93 156 -112 1 1061 385 173 49 12 chr11 62437055 62437137 -59406719 - B1F SINE Alu -52 97 13 1 1061 331 325 81 17 chr11 62438658 62438893 -59404963 + Charlie1a DNA MER1_type 1042 1291 -164 1 1061 339 238 110 8 chr11 62439153 62439280 -59404576 - L1MB8 LINE L1 -93 6085 5946 1 1061 245 167 0 0 chr11 62439465 62439513 -59404343 + B1_Mus2 SINE Alu 79 126 -21 1 1061 1060 191 29 0 chr11 62439544 62439753 -59404103 - B3 SINE B2 -1 215 1 1 1061 316 286 0 0 chr11 62439755 62439839 -59404017 + Charlie1a DNA MER1_type 1322 1405 -50 1 1061 351 230 112 22 chr11 62440190 62440320 -59403536 - MLT1A1 LTR MaLR -16 392 268 1 1061 1914 140 70 3 chr11 62440767 62441110 -59402746 + ORR1D1 LTR MaLR 1 366 -8 1 1061 241 194 52 65 chr11 62441117 62441194 -59402662 - B4 SINE B4 -216 76 1 1 1061 402 289 94 35 chr11 62441768 62441969 -59401887 + L1MB3 LINE L1 5487 5699 -481 1 1061 530 229 183 0 chr11 62441981 62442134 -59401722 + B3 SINE B2 27 207 -9 1 1061 731 243 126 11 chr11 62442134 62442442 -59401414 + L1MB3 LINE L1 5698 6037 -137 1 1061 400 306 9 0 chr11 62442488 62442599 -59401257 - PB1 SINE Alu -12 115 4 1 1061 252 0 0 0 chr11 62442611 62442639 -59401217 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1061 189 68 22 43 chr11 62443928 62443974 -59399882 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 1 1061 290 243 14 16 chr11 62444675 62444760 -59399096 + MLT1C LTR MaLR 307 467 0 1 1061 1103 183 19 33 chr11 62445026 62445241 -59398615 + B3 SINE B2 1 212 -4 1 1061 901 224 34 34 chr11 62445249 62445457 -59398399 + B3 SINE B2 8 215 -1 1 1061 294 270 32 0 chr11 62445488 62445551 -59398305 + BC1_Mm scRNA scRNA 18 82 -70 1 1061 686 157 0 87 chr11 62445586 62445712 -59398144 + PB1D9 SINE Alu 1 115 -5 1 1061 1185 51 0 0 chr11 62445739 62445876 -59397980 + B1_Mus2 SINE Alu 2 138 -9 1 1061 723 211 38 38 chr11 62445923 62446081 -59397775 - B3 SINE B2 0 216 59 1 1061 224 344 31 62 chr11 62446175 62446271 -59397585 + RSINE1 SINE B4 73 165 0 1 1061 945 261 14 0 chr11 62446508 62446715 -59397141 + B3 SINE B2 1 210 -6 1 1061 22 56 0 0 chr11 62446976 62447012 -59396844 + AT_rich Low_complexity Low_complexity 1 36 0 1 1061 390 201 42 151 chr11 62447057 62447268 -59396588 + MT2B LTR ERVL 82 264 -320 1 1061 787 123 57 0 chr11 62447176 62447298 -59396558 + B1_Mur3 SINE Alu 16 144 -5 1 1061 1267 116 28 0 chr11 62447680 62447861 -59395995 - B2_Mm2 SINE B2 -7 188 3 1 1061 902 159 27 33 chr11 62447881 62448031 -59395825 - B1_Mur3 SINE Alu 0 149 1 1 1061 288 203 13 13 chr11 62448053 62448128 -59395728 - Lx8 LINE L1 -2 7471 7397 1 1061 452 158 21 191 chr11 62448157 62448298 -59395558 + PB1D9 SINE Alu 2 118 -2 1 1061 500 239 71 14 chr11 62448521 62448661 -59395195 + B1_Mus1 SINE Alu 1 148 0 1 1061 264 282 37 49 chr11 62448712 62448794 -59395062 + RSINE1 SINE B4 66 146 -19 1 1061 182 300 87 39 chr11 62448995 62449099 -59394757 + MER5B DNA MER1_type 7 115 -63 1 1061 222 163 0 65 chr11 62449262 62449308 -59394548 - B1F SINE Alu -23 126 84 1 1061 800 239 6 0 chr11 62449354 62449513 -59394343 + B3 SINE B2 57 216 0 1 1061 961 210 99 121 chr11 62450468 62450891 -59392965 - MLT2D LTR ERVL 0 414 1 1 1061 393 75 0 0 chr11 62451236 62451289 -59392567 + (CCA)n Simple_repeat Simple_repeat 1 53 0 1 1061 459 92 0 0 chr11 62451723 62451788 -59392068 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1061 215 100 0 48 chr11 62451800 62451842 -59392014 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 1 1061 617 195 0 50 chr11 62454357 62454476 -59389380 + PB1D10 SINE Alu 5 117 0 1 1061 1182 201 18 9 chr11 62454529 62454750 -59389106 + ID_B1 SINE B4 2 224 0 1 1061 254 275 85 38 chr11 62454971 62455077 -59388779 - PB1D10 SINE Alu -1 116 6 1 1061 372 267 127 89 chr11 62455254 62455570 -59388286 - MLT1A0 LTR MaLR 0 365 38 1 1061 447 122 11 22 chr11 62455785 62455877 -59387979 + GA-rich Low_complexity Low_complexity 2 92 0 1 1061 258 213 0 0 chr11 62456294 62456341 -59387515 + MLT1B LTR MaLR 344 390 0 1 1061 375 23 0 0 chr11 62456416 62456460 -59387396 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1061 180 0 0 0 chr11 62456462 62456482 -59387374 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1 1061 248 259 33 127 chr11 62458044 62458225 -59385631 + MTEa LTR MaLR 198 361 -18 1 1061 226 261 98 65 chr11 62458754 62458877 -59384979 - MIRc SINE MIR -130 138 12 1 1061 1047 206 9 57 chr11 62459332 62459559 -59384297 + ID_B1 SINE B4 4 219 -5 1 1061 369 279 82 70 chr11 62460320 62460478 -59383378 - Tigger14a DNA MER2_type -72 252 93 1 1061 30 0 0 0 chr11 62461819 62461849 -59382007 + GC_rich Low_complexity Low_complexity 1 30 0 1 1061 194 62 0 30 chr11 62461991 62462024 -59381832 + (CGGGGG)n Simple_repeat Simple_repeat 2 33 0 1 1061 215 0 0 62 chr11 62462124 62462156 -59381700 + (CCCCG)n Simple_repeat Simple_repeat 5 34 0 1 1061 204 375 42 30 chr11 62462454 62462619 -59381237 + MER5A DNA MER1_type 5 171 -18 1 1061 22 35 0 0 chr11 62462909 62462938 -59380918 + AT_rich Low_complexity Low_complexity 1 29 0 1 1061 473 315 19 52 chr11 62463122 62463276 -59380580 - B4 SINE B4 -60 232 84 1 1061 1447 75 27 0 chr11 62463276 62463463 -59380393 - B2_Mm1t SINE B2 0 193 2 1 1061 646 224 22 15 chr11 62463470 62463606 -59380250 - B1F2 SINE Alu 0 149 13 1 1061 40 21 0 0 chr11 62463613 62463660 -59380196 + AT_rich Low_complexity Low_complexity 1 47 0 1 1061 321 194 53 40 chr11 62463671 62463746 -59380110 - B4 SINE B4 -207 85 10 1 1061 1073 247 243 5 chr11 62463769 62464156 -59379700 - MER31A LTR ERV1 -5 480 2 1 1061 934 143 13 20 chr11 62464679 62464829 -59379027 + B1_Mur3 SINE Alu 1 149 0 1 1061 360 0 0 0 chr11 62464850 62464890 -59378966 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1061 333 0 0 0 chr11 62464890 62464926 -59378930 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1061 953 139 35 0 chr11 62464998 62465142 -59378714 - B1_Mur4 SINE Alu -1 149 1 1 1061 467 288 108 26 chr11 62465143 62465375 -59378481 + L2b LINE L2 1873 2123 -1296 1 1061 673 255 215 57 chr11 62465667 62466014 -59377842 - LTR40c LTR ERVL -56 463 1 1 1061 569 330 16 5 chr11 62466251 62466443 -59377413 - MIRb SINE MIR -58 210 17 1 1061 242 234 62 38 chr11 62466548 62466628 -59377228 - MTEb LTR MaLR -4 375 294 1 1061 209 122 24 0 chr11 62466628 62466669 -59377187 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1061 1154 63 35 0 chr11 62466669 62466811 -59377045 - B1_Mus1 SINE Alu -1 147 1 1 1061 767 201 44 82 chr11 62466816 62467022 -59376834 - B3A SINE B2 0 198 1 1 1061 350 299 64 0 chr11 62467045 62467157 -59376699 - PB1D7 SINE Alu 0 120 3 1 1061 238 277 118 71 chr11 62467243 62467416 -59376440 - MTEb LTR MaLR -192 178 9 1 1061 192 258 42 83 chr11 62467873 62467945 -59375911 + L2b LINE L2 3302 3370 -5 1 1061 310 203 935 61 chr11 62468100 62468207 -59375649 - MTEa LTR MaLR -175 204 5 1 1061 254 223 154 48 chr11 62468159 62468358 -59375498 + MTE2a LTR MaLR 183 406 -13 1 1061 1429 280 34 23 chr11 62468618 62469094 -59374762 + MER31A LTR ERV1 1 481 -4 1 1061 748 270 48 29 chr11 62469209 62469419 -59374437 - MTEa LTR MaLR -2 377 164 1 1061 484 248 18 37 chr11 62469435 62469544 -59374312 + PB1D9 SINE Alu 2 108 -12 1 1061 955 136 0 13 chr11 62469564 62469713 -59374143 - B1_Mus1 SINE Alu 0 148 2 1 1061 394 336 0 18 chr11 62469729 62469841 -59374015 - MTEa LTR MaLR -201 178 69 1 1061 1119 71 0 0 chr11 62469852 62469992 -59373864 + B1_Mus1 SINE Alu 3 142 -6 1 1061 765 132 0 20 chr11 62470006 62470153 -59373703 + GA-rich Low_complexity Low_complexity 3 146 0 1 1061 422 262 0 0 chr11 62470153 62470237 -59373619 - MTEa LTR MaLR -291 88 5 1 1061 246 213 0 0 chr11 62471254 62471301 -59372555 - PB1D10 SINE Alu -5 112 66 1 1061 396 322 57 81 chr11 62471364 62471661 -59372195 - L1ME3B LINE L1 -260 5980 5691 1 1061 240 148 32 16 chr11 62471661 62471723 -59372133 + CT-rich Low_complexity Low_complexity 2 64 0 1 1061 1107 76 14 0 chr11 62471749 62471894 -59371962 + B1_Mus2 SINE Alu 1 147 0 1 1061 857 227 42 28 chr11 62471911 62472124 -59371732 - B3 SINE B2 0 216 1 1 1061 369 0 0 0 chr11 62472139 62472180 -59371676 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1061 330 325 99 56 chr11 62472212 62472551 -59371305 + MLT1A LTR MaLR 3 365 0 1 1061 733 200 16 0 chr11 62472638 62472763 -59371093 + B1_Mur1 SINE Alu 20 146 -3 1 1061 299 331 70 6 chr11 62472795 62472953 -59370903 + L1M4 LINE L1 5689 5856 -328 1 1061 1366 48 0 79 chr11 62473272 62473474 -59370382 - B2_Mm2 SINE B2 -8 187 2 1 1061 552 194 213 24 chr11 62474029 62474193 -59369663 + B3A SINE B2 1 195 -3 1 1061 280 251 145 15 chr11 62474941 62475049 -59368807 - MLT1J1 LTR MaLR -317 195 75 1 1061 1398 75 32 0 chr11 62475280 62475466 -59368390 - B2_Mm1t SINE B2 -1 192 1 1 1061 1548 152 83 20 chr11 62475532 62475572 -59368284 - MT2B LTR ERVL 0 601 545 1 1061 504 0 0 0 chr11 62475572 62475628 -59368228 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1 1061 1548 179 114 23 chr11 62475628 62475991 -59367865 - MT2B LTR ERVL -57 544 7 1 1061 319 222 134 49 chr11 62475908 62476050 -59367806 - ORR1A3-int LTR MaLR -1258 705 552 1 1061 398 269 79 20 chr11 62476106 62476258 -59367598 + B3 SINE B2 1 161 -32 1 1061 639 132 7 12 chr11 62476254 62476371 -59367485 - B1_Mur3 SINE Alu -1 119 1 1 1061 558 319 12 12 chr11 62476374 62476536 -59367320 + MER20 DNA MER1_type 57 218 -1 1 1061 905 267 0 0 chr11 62476543 62476734 -59367122 + B3 SINE B2 1 191 -25 1 1061 319 309 111 40 chr11 62476815 62477119 -59366737 + MLT1J1 LTR MaLR 16 340 -108 1 1061 323 182 43 43 chr11 62477160 62477229 -59366627 - RSINE1 SINE B4 -12 153 85 1 1061 686 181 138 0 chr11 62477243 62477381 -59366475 - B3 SINE B2 -10 206 50 1 1061 353 217 118 101 chr11 62477488 62477657 -59366199 + MT2B LTR ERVL 107 278 -323 1 1061 809 122 0 64 chr11 62477548 62477688 -59366168 + B1_Mus2 SINE Alu 17 147 0 1 1061 183 114 0 0 chr11 62477688 62477723 -59366133 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 1 1061 314 208 0 72 chr11 62477828 62477911 -59365945 + MLT2B4 LTR ERVL 1 77 -479 1 1061 557 243 0 9 chr11 62477967 62478075 -59365781 + PB1D7 SINE Alu 1 107 -13 1 1061 180 0 0 0 chr11 62478851 62478871 -59364985 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1 1061 579 294 127 63 chr11 62478886 62479267 -59364589 + MLT2B4 LTR ERVL 42 460 -96 1 1061 1107 296 41 0 chr11 62479574 62479865 -59363991 - MER2 DNA MER2_type -5 340 38 1 1061 214 125 0 91 chr11 62480043 62480067 -59363789 + polypurine Low_complexity Low_complexity 2 23 0 1 1061 252 0 0 0 chr11 62480067 62480095 -59363761 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1061 214 125 0 91 chr11 62480095 62480114 -59363742 + polypurine Low_complexity Low_complexity 24 41 0 1 1061 213 39 0 0 chr11 62480114 62480140 -59363716 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 1061 376 158 35 0 chr11 62480140 62480197 -59363659 - B1_Mus1 SINE Alu -81 67 9 1 1061 313 303 26 0 chr11 62480141 62480217 -59363639 - B4 SINE B4 -142 150 73 1 1061 584 247 93 19 chr11 62480885 62481046 -59362810 + MTD LTR MaLR 6 178 -241 1 1061 778 225 122 90 chr11 62481059 62481371 -59362485 + MTE2a LTR MaLR 58 379 0 1 1061 844 248 167 32 chr11 62481374 62481716 -59362140 - MLT1B LTR MaLR -2 388 1 1 1061 270 0 0 0 chr11 62481730 62481760 -59362096 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1061 544 321 59 0 chr11 62481837 62482058 -59361798 - MLT1B-int LTR MaLR -55 1316 1083 1 1061 1452 65 38 0 chr11 62482171 62482357 -59361499 + B2_Mm2 SINE B2 2 194 -1 1 1061 294 281 61 0 chr11 62482538 62482620 -59361236 - Tigger7 DNA MER2_type -2224 267 181 1 1061 187 264 132 0 chr11 62482775 62482828 -59361028 + L2a LINE L2 3310 3369 -57 1 1061 665 208 56 0 chr11 62483434 62483559 -59360297 + B1F2 SINE Alu 4 135 -14 1 1061 271 269 138 29 chr11 62483692 62483830 -59360026 + MER5A DNA MER1_type 33 185 -4 1 1061 214 309 93 0 chr11 62484030 62484127 -59359729 + L2b LINE L2 2957 3062 -313 1 1061 307 344 0 11 chr11 62484261 62484355 -59359501 + L2b LINE L2 3282 3374 -1 1 1061 371 277 46 0 chr11 62484461 62484591 -59359265 - L1MB1 LINE L1 -222 5946 5811 1 1061 227 196 43 0 chr11 62484657 62484703 -59359153 - L1MB1 LINE L1 -500 5671 5624 1 1061 1346 193 136 89 chr11 62484772 62485199 -59358657 - RMER4B LTR ERVK -9 576 130 1 1061 1102 37 7 0 chr11 62485216 62485351 -59358505 + B1_Mus1 SINE Alu 12 147 -1 1 1061 227 104 21 0 chr11 62485352 62485400 -59358456 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 1 1061 421 154 115 0 chr11 62485401 62485479 -59358377 - RMER4B LTR ERVK -441 144 58 1 1061 3483 50 2 0 chr11 62485479 62485897 -59357959 + L1_Mus1 LINE L1 6149 6567 0 1 1061 252 211 0 0 chr11 62485936 62485988 -59357868 - RMER4B LTR ERVK -398 68 17 1 1061 643 160 9 0 chr11 62486002 62486108 -59357748 - B1_Mus2 SINE Alu -1 146 40 1 1061 233 330 0 0 chr11 62486111 62486202 -59357654 + C-rich Low_complexity Low_complexity 6 96 0 1 1061 213 133 149 43 chr11 62486205 62486252 -59357604 - B1_Mus1 SINE Alu -96 52 1 1 1061 267 257 48 38 chr11 62486257 62486362 -59357494 - L1MB1 LINE L1 -559 5609 5504 1 1061 360 0 0 0 chr11 62486462 62486502 -59357354 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1061 353 329 121 7 chr11 62486513 62486654 -59357202 - B4A SINE B4 0 292 136 1 1061 413 249 70 48 chr11 62486634 62486820 -59357036 - B4 SINE B4 -94 198 9 1 1061 311 245 71 41 chr11 62486825 62486923 -59356933 - L1MB1 LINE L1 -691 5489 5389 1 1061 661 299 29 115 chr11 62486986 62487300 -59356556 - B4A SINE B4 -4 288 2 1 1061 320 212 0 59 chr11 62487314 62487325 -59356531 - L1MB1 LINE L1 -782 5398 5388 1 1061 1579 26 0 54 chr11 62487325 62487529 -59356327 - B2_Mm1a SINE B2 0 193 1 1 1061 320 212 0 59 chr11 62487529 62487602 -59356254 - L1MB1 LINE L1 -793 5387 5319 1 1061 500 246 70 28 chr11 62487604 62487746 -59356110 - B1_Mur2 SINE Alu 0 149 2 1 1061 598 251 130 11 chr11 62487792 62487977 -59355879 - B3 SINE B2 -8 208 2 1 1061 268 324 158 7 chr11 62488036 62488210 -59355646 - MIR SINE MIR -8 260 54 1 1061 709 205 0 0 chr11 62488976 62489093 -59354763 - ID_B1 SINE B4 -21 203 87 1 1061 1054 251 82 16 chr11 62489782 62490217 -59353639 + MER44B DNA MER2_type 74 550 0 1 1061 985 113 0 57 chr11 62490286 62490445 -59353411 + B1_Mur4 SINE Alu 1 150 0 1 1061 216 0 0 0 chr11 62490454 62490478 -59353378 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1061 383 343 81 103 chr11 62490592 62490826 -59353030 - RMER15 LTR ERVL -4 571 343 1 1061 361 298 36 101 chr11 62491113 62491282 -59352574 - ORR1E LTR MaLR -213 161 4 1 1061 861 248 153 19 chr11 62491288 62491668 -59352188 - L1MB3 LINE L1 -145 6038 5600 1 1061 304 318 68 43 chr11 62492074 62492235 -59351621 - MIRc SINE MIR -55 213 49 1 1061 481 281 115 61 chr11 62492332 62492707 -59351149 + L1MB8 LINE L1 5599 5993 -185 1 1061 1972 162 134 12 chr11 62492794 62493226 -59350630 - Lx2B LINE L1 0 7000 6516 1 1061 1721 21 0 0 chr11 62493243 62493435 -59350421 - B2_Mm1a SINE B2 0 193 2 1 1061 195 42 0 0 chr11 62493456 62493480 -59350376 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1061 357 24 0 0 chr11 62493480 62493521 -59350335 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1061 350 222 96 35 chr11 62493521 62493617 -59350239 - PB1D7 SINE Alu -22 98 2 1 1061 207 162 0 0 chr11 62493628 62493665 -59350191 + T-rich Low_complexity Low_complexity 1 37 0 1 1061 234 0 0 0 chr11 62493976 62494002 -59349854 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1061 429 288 171 20 chr11 62494199 62494444 -59349412 - MLT1C LTR MaLR 0 467 186 1 1061 2553 62 19 6 chr11 62494445 62494768 -59349088 + ORR1A2 LTR MaLR 1 327 0 1 1061 363 262 110 6 chr11 62494770 62494951 -59348905 + L1_Mur3 LINE L1 5217 5458 -710 1 1061 4637 110 29 17 chr11 62495056 62495379 -59348477 - RLTR19B LTR ERVK -5 710 388 1 1061 209 57 29 0 chr11 62495379 62495414 -59348442 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1061 1219 15 0 0 chr11 62495414 62495548 -59348308 - B1_Mus2 SINE Alu -13 134 1 1 1061 4637 110 29 17 chr11 62495548 62495902 -59347954 - RLTR19B LTR ERVK -328 387 26 1 1061 333 0 0 0 chr11 62495902 62495939 -59347917 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1061 4637 110 29 17 chr11 62495939 62495961 -59347895 - RLTR19B LTR ERVK -690 25 3 1 1061 268 200 0 0 chr11 62495962 62496007 -59347849 + ID4 SINE ID 38 82 -1 1 1061 514 200 117 58 chr11 62496035 62496189 -59347667 + RSINE1 SINE B4 3 165 0 1 1061 1498 44 28 0 chr11 62496321 62496503 -59347353 + B2_Mm2 SINE B2 2 188 -7 1 1061 742 174 77 16 chr11 62496524 62496646 -59347210 + ORR1C2 LTR MaLR 185 323 -61 1 1061 267 31 0 0 chr11 62496646 62496678 -59347178 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1061 742 155 92 0 chr11 62496678 62496738 -59347118 + ORR1C2 LTR MaLR 324 383 -1 1 1061 4278 231 40 20 chr11 62496738 62497756 -59346100 + ORR1C2-int LTR MaLR 1 1705 -258 1 1061 478 225 53 15 chr11 62497827 62497958 -59345898 + MER31A LTR ERV1 1 136 -349 1 1061 192 40 0 0 chr11 62497974 62497999 -59345857 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1 1061 242 278 0 0 chr11 62497999 62498053 -59345803 - ID4_ SINE ID -23 60 7 1 1061 865 106 24 0 chr11 62498054 62498177 -59345679 - B1_Mus1 SINE Alu -21 127 2 1 1061 327 261 136 0 chr11 62498178 62498266 -59345590 + MER31A LTR ERV1 141 240 -245 1 1061 420 198 208 0 chr11 62498294 62498390 -59345466 + ORR1C2 LTR MaLR 3 118 -256 1 1061 2190 152 86 58 chr11 62498397 62498887 -59344969 + RLTR31A_Mm LTR ERVK 1 561 0 1 1061 384 22 0 0 chr11 62498913 62498958 -59344898 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1061 863 205 85 45 chr11 62498966 62499128 -59344728 + ORR1C2 LTR MaLR 178 351 -33 1 1061 2051 178 140 87 chr11 62499128 62499634 -59344222 + MT2A LTR ERVL 1 533 0 1 1061 863 205 85 45 chr11 62499634 62499670 -59344186 + ORR1C2 LTR MaLR 352 384 0 1 1061 1258 48 0 7 chr11 62499679 62499827 -59344029 + B1_Mus1 SINE Alu 2 148 0 1 1061 228 86 0 0 chr11 62499827 62499862 -59343994 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1061 1815 278 34 22 chr11 62500000 62500552 -59343304 - Lx8 LINE L1 -707 6766 6208 1 1061 28 29 0 0 chr11 62500563 62500598 -59343258 + AT_rich Low_complexity Low_complexity 1 35 0 2 1061 1259 249 20 3 chr11 62500812 62501106 -59342750 - Lx8 LINE L1 0 5847 5549 1 1061 340 277 107 59 chr11 62501099 62501268 -59342588 - L1_Mur3 LINE L1 -455 5425 5249 3 1061 755 202 22 44 chr11 62501332 62501513 -59342343 - B3A SINE B2 -20 178 2 4 1061 1832 278 83 142 chr11 62501517 62502464 -59341392 - L1_Mur3 LINE L1 -621 5259 4275 3 1061 766 148 70 13 chr11 62502464 62502621 -59341235 - B2_Mm2 SINE B2 -3 192 27 5 1061 1832 278 83 142 chr11 62502621 62503141 -59340715 - L1_Mur3 LINE L1 -621 4274 3732 3 1061 330 115 319 80 chr11 62503141 62503254 -59340602 - B2_Mm2 SINE B2 -9 186 47 6 1061 1214 109 11 0 chr11 62503333 62503508 -59340348 - B2_Mm1t SINE B2 -14 179 3 7 1061 328 121 17 0 chr11 62503529 62503587 -59340269 - B3 SINE B2 -7 209 151 8 1061 306 187 27 0 chr11 62503690 62503765 -59340091 - L1MEg LINE L1 -2406 3740 3664 9 1061 1159 76 0 0 chr11 62503786 62503931 -59339925 - B1_Mus1 SINE Alu -3 145 1 1 1061 2801 135 115 2 chr11 62504016 62504528 -59339328 + RMER4B LTR ERVK 16 585 0 1 1061 947 149 127 0 chr11 62504528 62504706 -59339150 + ORR1B1 LTR MaLR 17 217 -177 1 1061 234 264 65 21 chr11 62505426 62505519 -59338337 - L1MEg LINE L1 -4091 2151 2055 9 1061 243 158 0 0 chr11 62505603 62505641 -59338215 + B1F SINE Alu 103 140 -9 1 1061 181 163 20 20 chr11 62505644 62505694 -59338162 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1061 1409 47 9 108 chr11 62505732 62505945 -59337911 + B2_Mm1a SINE B2 2 193 0 1 1061 593 243 44 44 chr11 62506208 62506389 -59337467 - B3A SINE B2 -16 182 2 1 1061 1507 27 26 21 chr11 62507230 62507389 -59336467 + B2_Mm1a SINE B2 2 160 -33 1 1061 186 43 0 0 chr11 62507389 62507412 -59336444 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1061 1507 27 26 21 chr11 62507412 62507443 -59336413 + B2_Mm1a SINE B2 161 193 0 1 1061 212 289 0 0 chr11 62507446 62507491 -59336365 + ID4_ SINE ID 26 70 -13 1 1061 263 104 0 20 chr11 62507511 62507560 -59336296 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 2 1061 258 203 34 0 chr11 62507560 62507619 -59336237 - MLT1D LTR MaLR -432 73 13 2 1061 229 246 53 0 chr11 62507641 62507698 -59336158 - RCHARR1 DNA MER1_type -33 941 882 2 1061 468 140 288 94 chr11 62507712 62507868 -59335988 + B3 SINE B2 11 196 -20 2 1061 588 112 140 0 chr11 62507969 62508076 -59335780 - B1_Mur3 SINE Alu -13 136 15 2 1061 1115 226 28 14 chr11 62508085 62508368 -59335488 - RCHARR1 DNA MER1_type -154 820 534 2 1061 713 135 155 23 chr11 62508451 62508580 -59335276 - B1_Mus2 SINE Alu 0 147 2 2 1061 656 244 60 11 chr11 62508712 62508894 -59334962 + B3A SINE B2 4 194 -4 2 1061 1245 66 84 0 chr11 62508919 62509086 -59334770 + B2_Mm2 SINE B2 1 181 -14 2 1061 281 200 0 15 chr11 62509119 62509185 -59334671 + MTE2a LTR MaLR 305 369 -10 2 1061 1520 241 79 23 chr11 62509181 62509660 -59334196 - RCHARR1 DNA MER1_type -466 508 3 2 1061 36 0 0 0 chr11 62509819 62509855 -59334001 + AT_rich Low_complexity Low_complexity 1 36 0 2 1061 339 25 0 0 chr11 62509869 62509909 -59333947 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1061 2044 291 83 34 chr11 62509913 62510705 -59333151 + Lx8 LINE L1 6403 7233 -240 3 1061 376 263 197 16 chr11 62511488 62511681 -59332175 + Lx8 LINE L1 7239 7466 -7 3 1061 461 234 55 18 chr11 62511717 62511826 -59332030 - RSINE1 SINE B4 -15 150 38 3 1061 1034 87 0 14 chr11 62511959 62512099 -59331757 + B1_Mus1 SINE Alu 2 139 -9 3 1061 300 53 0 0 chr11 62512099 62512137 -59331719 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 3 1061 229 291 0 0 chr11 62512152 62512207 -59331649 + B1F SINE Alu 91 145 -4 3 1061 355 268 118 9 chr11 62512312 62512456 -59331400 + L1MC5 LINE L1 6692 6859 -1183 3 1061 510 242 117 66 chr11 62512528 62512802 -59331054 + B4A SINE B4 5 292 0 3 1061 1146 162 39 10 chr11 62512872 62513078 -59330778 + B3 SINE B2 5 216 0 3 1061 1467 75 0 5 chr11 62513868 62514056 -59329800 - B2_Mm2 SINE B2 -8 187 1 3 1061 235 250 79 0 chr11 62514227 62514303 -59329553 + L1MC5 LINE L1 7510 7591 -370 3 1061 236 175 35 0 chr11 62514336 62514393 -59329463 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 4 1061 426 248 0 0 chr11 62514421 62514546 -59329310 + (CA)n Simple_repeat Simple_repeat 1 125 0 4 1061 321 262 205 8 chr11 62514563 62514690 -59329166 - ID_B1 SINE B4 -67 157 6 4 1061 2857 137 48 16 chr11 62514736 62515220 -59328636 + RLTR19 LTR ERVK 1 499 0 4 1061 6193 67 3 173 chr11 62515249 62515802 -59328054 + L1VL2 LINE L1 109 656 -5679 4 1061 1170 92 0 11 chr11 62515802 62515961 -59327895 + B2_Mm2 SINE B2 2 159 -36 4 1061 216 0 0 0 chr11 62515961 62515985 -59327871 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 4 1061 1170 92 0 11 chr11 62515985 62516001 -59327855 + B2_Mm2 SINE B2 160 175 -20 4 1061 14437 63 26 48 chr11 62516001 62517139 -59326717 + L1VL2 LINE L1 657 1780 -1835 4 1061 1671 27 0 0 chr11 62517139 62517326 -59326530 + B2_Mm1t SINE B2 2 188 -5 4 1061 14437 62 34 9 chr11 62517326 62518481 -59325375 + L1VL2 LINE L1 1781 2989 -626 4 1061 741 212 14 7 chr11 62518866 62519013 -59324843 - B1_Mur1 SINE Alu -1 148 1 4 1061 2242 147 99 2 chr11 62519198 62519600 -59324256 + BGLII_B LTR ERVK 1 441 0 5 1061 198 0 0 0 chr11 62520930 62520952 -59322904 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1062 310 241 11 65 chr11 62521562 62521655 -59322201 - B1_Mur1 SINE Alu -16 133 46 5 1062 907 209 18 54 chr11 62522886 62523109 -59320747 + B3 SINE B2 2 216 0 5 1062 252 0 0 0 chr11 62523205 62523233 -59320623 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1062 594 79 0 0 chr11 62523233 62523321 -59320535 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 1062 280 200 56 28 chr11 62523335 62523407 -59320449 + ID4 SINE ID 5 78 -5 5 1062 280 313 94 39 chr11 62523788 62523991 -59319865 + L1MC4 LINE L1 6738 6951 -1091 5 1062 22 0 0 0 chr11 62525767 62525789 -59318067 + AT_rich Low_complexity Low_complexity 1 22 0 5 1062 959 70 0 0 chr11 62526209 62526338 -59317518 + B2_Mm2 SINE B2 2 130 -65 5 1062 248 241 0 0 chr11 62527454 62527508 -59316348 - MMSAT4 Satellite Satellite 0 168 115 6 1062 321 320 4 4 chr11 62527622 62527844 -59316012 - MMSAT4 Satellite Satellite 0 222 1 6 1062 421 280 27 27 chr11 62527879 62528348 -59315508 - MMSAT4 Satellite Satellite -5 469 1 6 1062 432 0 0 0 chr11 62529213 62529261 -59314595 + (TAA)n Simple_repeat Simple_repeat 2 49 0 6 1062 829 174 0 0 chr11 62529268 62529412 -59314444 - B1_Mur3 SINE Alu -5 144 1 6 1062 4464 48 6 0 chr11 62529925 62530461 -59313395 - L1Md_F2 LINE L1 -1 6581 6043 6 1062 3162 45 0 3 chr11 62530585 62531005 -59312851 - L1Md_F3 LINE L1 0 6584 6190 6 1062 1405 66 44 0 chr11 62531325 62531506 -59312350 - B2_Mm2 SINE B2 -6 189 1 6 1062 27 49 0 0 chr11 62532081 62532122 -59311734 + AT_rich Low_complexity Low_complexity 1 41 0 6 1062 414 230 0 0 chr11 62532291 62532465 -59311391 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1062 320 214 0 0 chr11 62532504 62532560 -59311296 - ID4 SINE ID -18 65 10 6 1062 777 214 101 10 chr11 62532884 62533082 -59310774 + B3 SINE B2 1 216 0 7 1062 744 197 0 0 chr11 62533084 62533216 -59310640 + B1_Mur4 SINE Alu 11 142 -8 7 1062 239 21 0 77 chr11 62533216 62533268 -59310588 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 7 1062 1623 37 0 0 chr11 62533351 62533538 -59310318 - B2_Mm1a SINE B2 -5 188 2 7 1062 679 183 8 0 chr11 62533604 62533724 -59310132 - B1_Mm SINE Alu -6 141 21 7 1062 262 77 0 0 chr11 62534084 62534123 -59309733 + B3 SINE B2 1 39 -177 7 1062 1179 55 0 0 chr11 62534125 62534270 -59309586 + B1_Mus1 SINE Alu 2 146 -2 7 1062 683 35 0 0 chr11 62534298 62534384 -59309472 + B2_Mm2 SINE B2 27 112 -83 7 1062 360 305 107 9 chr11 62534409 62534624 -59309232 + L1MC4 LINE L1 6691 6926 -1116 7 1062 485 207 118 47 chr11 62535113 62535240 -59308616 + B1_Mur1 SINE Alu 12 147 -2 7 1062 724 242 168 20 chr11 62535444 62535771 -59308085 + Lx9 LINE L1 5507 5913 -1731 8 1062 406 276 49 37 chr11 62535804 62535966 -59307890 - RSINE1 SINE B4 0 165 2 8 1062 189 0 0 0 chr11 62536199 62536220 -59307636 + (CCAA)n Simple_repeat Simple_repeat 1 21 0 8 1062 669 89 62 0 chr11 62536513 62536625 -59307231 - B1_Mus1 SINE Alu 0 148 30 8 1062 403 231 44 44 chr11 62536640 62536753 -59307103 - PB1D10 SINE Alu -4 113 1 8 1062 2783 160 61 16 chr11 62537250 62537327 -59306529 + MT2A LTR ERVL 3 83 -450 8 1062 186 71 0 0 chr11 62537327 62537355 -59306501 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 8 1062 2783 160 61 16 chr11 62537355 62537742 -59306114 + MT2A LTR ERVL 84 487 -46 8 1062 1137 128 0 0 chr11 62537742 62537922 -59305934 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1062 396 0 0 0 chr11 62537922 62537966 -59305890 + (CCTA)n Simple_repeat Simple_repeat 1 44 0 8 1062 2783 160 61 16 chr11 62537966 62538007 -59305849 + MT2A LTR ERVL 488 532 -1 8 1062 332 350 0 0 chr11 62538743 62538886 -59304970 - MurSatRep1 Unknown Unknown -1392 745 603 8 1062 448 223 29 0 chr11 62538996 62539099 -59304757 + PB1D10 SINE Alu 2 107 -10 9 1062 351 0 0 0 chr11 62539300 62539339 -59304517 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1062 618 249 11 80 chr11 62539480 62539655 -59304201 - B4A SINE B4 -122 170 8 9 1062 751 186 7 14 chr11 62539855 62539997 -59303859 - B1_Mur1 SINE Alu -4 145 5 9 1062 301 243 0 0 chr11 62540049 62540119 -59303737 - PB1D10 SINE Alu -4 113 44 9 1062 185 286 103 35 chr11 62540760 62540876 -59302980 - MIR SINE MIR -137 125 2 9 1062 238 245 19 0 chr11 62541380 62541433 -59302423 - ID4_ SINE ID -2 81 28 9 1062 2814 134 10 2 chr11 62542402 62542820 -59301036 - MTC LTR MaLR 0 421 1 9 1062 3477 169 305 12 chr11 62542822 62543081 -59300775 - MTC-int LTR MaLR -2 1256 960 9 1062 198 0 0 0 chr11 62543081 62543103 -59300753 + (CAAAT)n Simple_repeat Simple_repeat 3 24 0 9 1062 3477 169 305 12 chr11 62543103 62543356 -59300500 - MTC-int LTR MaLR -299 959 698 9 1062 2381 144 46 22 chr11 62543356 62543767 -59300089 + MTC LTR MaLR 1 421 0 9 1062 3477 169 305 12 chr11 62543767 62544224 -59299632 - MTC-int LTR MaLR -561 697 4 9 1062 1031 131 6 15 chr11 62544225 62544398 -59299458 - MTC LTR MaLR 0 421 195 9 1062 308 149 230 0 chr11 62544389 62544463 -59299393 - MTC LTR MaLR -330 91 1 9 1062 252 272 17 34 chr11 62545952 62546070 -59297786 - L1M2 LINE L1 -4830 2019 1904 1 1062 218 56 0 27 chr11 62546119 62546156 -59297700 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1062 420 162 12 12 chr11 62546199 62546280 -59297576 + B1_Mur1 SINE Alu 48 128 -21 1 1062 649 272 32 21 chr11 62546289 62546477 -59297379 + B3A SINE B2 3 192 -6 1 1062 457 294 14 14 chr11 62546585 62546733 -59297123 - L1_Rod LINE L1 -159 5688 5541 1 1062 708 71 0 0 chr11 62546733 62546832 -59297024 - B1_Mus2 SINE Alu 0 147 49 1 1062 289 256 0 37 chr11 62546782 62546863 -59296993 - RLTR25B LTR ERVK -530 498 421 1 1062 614 262 77 27 chr11 62546863 62547128 -59296728 - L1M2 LINE L1 -604 5585 5312 1 1062 1414 124 13 27 chr11 62547157 62547381 -59296475 + URR1B DNA MER1_type 2 222 -3 1 1062 509 283 277 12 chr11 62547382 62547786 -59296070 - L1M2 LINE L1 -1007 5136 4626 1 1062 550 91 114 0 chr11 62548342 62548430 -59295426 + B2_Mm1t SINE B2 1 98 -95 1 1062 29 28 0 0 chr11 62548469 62548505 -59295351 + AT_rich Low_complexity Low_complexity 1 36 0 1 1062 1205 55 0 0 chr11 62548705 62548851 -59295005 + B1_Mm SINE Alu 2 147 0 1 1062 14498 66 45 6 chr11 62549239 62551802 -59292054 - L1VL2 LINE L1 -626 2989 326 1 1062 3198 263 61 24 chr11 62551810 62552917 -59290939 - L1M2 LINE L1 -1489 4654 3507 1 1062 377 189 47 12 chr11 62552955 62553126 -59290730 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1062 573 211 56 25 chr11 62553131 62553291 -59290565 + MTE2b-int LTR MaLR 1414 1578 -2 1 1062 735 264 46 152 chr11 62553310 62553699 -59290157 + MTE2b LTR MaLR 18 365 -14 1 1062 216 254 0 0 chr11 62554020 62554079 -59289777 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1062 933 189 20 202 chr11 62554081 62554433 -59289423 - B4A SINE B4 0 292 5 1 1062 1325 234 53 38 chr11 62555017 62555337 -59288519 + Lx7 LINE L1 6242 6566 -1130 1 1062 288 0 0 0 chr11 62558407 62558439 -59285417 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1062 650 14 0 0 chr11 62559516 62559588 -59284268 - tRNA-Trp-TGG tRNA tRNA -3 72 1 1 1062 664 249 184 24 chr11 62560201 62560571 -59283285 - L1MC4a LINE L1 -551 7331 6903 1 1062 251 252 95 87 chr11 62561788 62561914 -59281942 - L1MC4a LINE L1 -1162 6880 6754 1 1062 262 200 83 0 chr11 62561932 62561992 -59281864 - L1MC4a LINE L1 -1345 6537 6473 1 1062 318 26 0 0 chr11 62562340 62562379 -59281477 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1062 477 0 0 0 chr11 62562380 62562433 -59281423 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1062 308 183 141 0 chr11 62562433 62562504 -59281352 - ORR1D1 LTR MaLR -215 159 79 1 1062 26 0 0 0 chr11 62562682 62562708 -59281148 + AT_rich Low_complexity Low_complexity 1 26 0 1 1062 228 204 0 0 chr11 62564852 62564901 -59278955 - B1_Mus2 SINE Alu 0 147 99 1 1062 329 256 23 0 chr11 62564895 62564981 -59278875 - ORR1D1 LTR MaLR -284 90 3 1 1062 333 274 59 8 chr11 62564981 62565085 -59278771 + ORR1D1 LTR MaLR 261 370 -4 1 1062 459 275 41 118 chr11 62565102 62565271 -59278585 - B3 SINE B2 -25 191 29 1 1062 24 53 0 0 chr11 62565346 62565384 -59278472 + AT_rich Low_complexity Low_complexity 1 38 0 1 1062 332 331 7 7 chr11 62566200 62566343 -59277513 - MMSAT4 Satellite Satellite -5 163 21 1 1062 242 244 68 82 chr11 62566364 62566590 -59277266 - MMSAT4 Satellite Satellite 0 222 1 1 1062 419 273 132 7 chr11 62567430 62567574 -59276282 - ID_B1 SINE B4 -24 200 39 1 1062 22 35 0 0 chr11 62567601 62567630 -59276226 + AT_rich Low_complexity Low_complexity 1 29 0 1 1062 259 125 0 0 chr11 62567681 62567721 -59276135 + B3 SINE B2 3 42 -174 1 1062 2645 140 45 96 chr11 62567721 62568186 -59275670 + RMER6A LTR ERVK 1 433 -323 1 1062 1478 225 185 52 chr11 62568186 62568683 -59275173 - RMER2 LTR ERV1 -4 563 1 1 1062 2645 140 45 96 chr11 62568683 62568833 -59275023 + RMER6A LTR ERVK 434 585 -171 1 1062 583 211 0 9 chr11 62568833 62568938 -59274918 + Lx8 LINE L1 6336 6439 -1034 1 1062 782 182 18 18 chr11 62568939 62569107 -59274749 - RLTR18 LTR ERVK -448 168 1 1 1062 181 304 75 12 chr11 62569589 62569669 -59274187 - MIRb SINE MIR -37 231 147 1 1062 228 67 0 0 chr11 62569818 62569848 -59274008 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1062 3032 166 90 51 chr11 62571139 62571875 -59271981 - RMER21A LTR ERV1 -8 939 181 1 1062 413 284 91 0 chr11 62572859 62573035 -59270821 + L1_Mur3 LINE L1 1526 1717 -4163 1 1062 640 113 29 23 chr11 62573040 62573212 -59270644 + RMER17A2 LTR ERVK 341 513 -393 1 1062 1514 330 60 14 chr11 62573220 62574117 -59269739 + L1_Rod LINE L1 1712 2649 -3198 1 1062 558 203 0 0 chr11 62574153 62574271 -59269585 + (CATA)n Simple_repeat Simple_repeat 2 119 0 1 1062 343 145 32 16 chr11 62574271 62574334 -59269522 + L1_Rod LINE L1 4817 4880 -967 1 1062 1023 279 138 11 chr11 62574338 62574707 -59269149 + RMER15-int LTR ERVL 1273 1688 -3311 1 1062 740 280 45 26 chr11 62575341 62575609 -59268247 - ORR1E LTR MaLR -16 343 71 1 1062 1420 151 83 0 chr11 62575688 62575940 -59267916 - RLTR20B3 LTR ERVK -304 273 1 1 1062 444 128 10 41 chr11 62576051 62576149 -59267707 + C-rich Low_complexity Low_complexity 1 95 0 1 1062 504 0 0 0 chr11 62576150 62576206 -59267650 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 1 1062 1649 31 11 0 chr11 62576426 62576617 -59267239 + B2_Mm1a SINE B2 1 193 0 1 1062 533 173 0 83 chr11 62576694 62576814 -59267042 + PB1D9 SINE Alu 4 113 -7 1 1062 275 71 24 0 chr11 62576818 62576860 -59266996 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1062 1319 7 0 0 chr11 62577565 62577717 -59266139 + L1Md_A LINE L1 6431 6582 0 1 1062 829 167 0 27 chr11 62577961 62578146 -59265710 + CT-rich Low_complexity Low_complexity 1 180 0 1 1062 1254 85 0 0 chr11 62578148 62578325 -59265531 + (TCC)n Simple_repeat Simple_repeat 2 178 0 1 1062 1861 103 200 0 chr11 62578451 62578650 -59265206 - RLTR44E LTR ERVK -20 432 167 1 1062 450 0 0 0 chr11 62578650 62578700 -59265156 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1062 1861 103 200 0 chr11 62578700 62578860 -59264996 - RLTR44E LTR ERVK -286 166 3 1 1062 303 182 0 18 chr11 62579077 62579133 -59264723 - ID4 SINE ID -28 55 1 1 1062 1842 173 76 0 chr11 62579479 62579820 -59264036 - ORR1B2 LTR MaLR 0 367 1 1 1062 6783 229 44 62 chr11 62580305 62581838 -59262018 - Lx7 LINE L1 -333 7363 5857 1 1062 537 16 0 0 chr11 62581838 62581900 -59261956 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1 1062 15149 199 72 90 chr11 62581900 62582412 -59261444 - Lx7 LINE L1 -1840 5856 5343 1 1062 1468 202 96 9 chr11 62582412 62582756 -59261100 - ORR1D1 LTR MaLR 0 374 1 1 1062 15149 199 72 91 chr11 62582756 62585844 -59258012 - Lx7 LINE L1 -538 5342 2243 1 1062 840 212 108 47 chr11 62585844 62586057 -59257799 - URR1A DNA MER1_type 0 226 1 1 1062 15149 199 72 91 chr11 62586057 62586499 -59257357 - Lx7 LINE L1 -3638 2242 1897 1 1062 680 35 11 0 chr11 62586499 62586586 -59257270 + (TTCTC)n Simple_repeat Simple_repeat 4 91 0 1 1062 667 131 115 0 chr11 62586587 62586709 -59257147 - B1_Mur4 SINE Alu -14 136 1 1 1062 15149 199 72 91 chr11 62586709 62586945 -59256911 - Lx7 LINE L1 -3984 1896 1638 1 1062 213 39 0 0 chr11 62586945 62586971 -59256885 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 1062 15149 199 72 91 chr11 62586971 62587041 -59256815 - Lx7 LINE L1 -4243 1637 1557 1 1062 1553 49 0 16 chr11 62587041 62587229 -59256627 - B2_Mm1a SINE B2 -8 185 1 1 1062 15149 253 69 75 chr11 62587229 62588349 -59255507 - Lx7 LINE L1 -4324 1556 528 1 1062 1194 267 21 14 chr11 62588563 62588852 -59255004 - B4A SINE B4 -1 291 1 1 1062 769 163 14 14 chr11 62589154 62589297 -59254559 - B1_Mus2 SINE Alu 0 147 5 1 1062 729 58 0 0 chr11 62589363 62589466 -59254390 + (TCTA)n Simple_repeat Simple_repeat 1 103 0 1 1062 960 89 89 0 chr11 62589778 62589913 -59253943 + B1_Mus1 SINE Alu 1 147 -1 1 1062 1887 152 26 20 chr11 62591480 62591829 -59252027 + ORR1B2 LTR MaLR 1 351 -16 1 1062 416 264 47 47 chr11 62593250 62593556 -59250300 - MMSAT4 Satellite Satellite 0 306 1 1 1062 465 288 33 30 chr11 62593586 62594054 -59249802 - MMSAT4 Satellite Satellite 0 469 1 1 1062 203 242 41 31 chr11 62594771 62594869 -59248987 + (TATAG)n Simple_repeat Simple_repeat 3 101 0 1 1062 600 233 14 0 chr11 62595144 62595298 -59248558 + B3 SINE B2 1 168 -30 1 1062 22 0 0 0 chr11 62595313 62595335 -59248521 + AT_rich Low_complexity Low_complexity 1 22 0 1 1062 769 247 34 6 chr11 62595352 62595527 -59248329 - B3A SINE B2 -18 180 1 1 1062 274 321 0 0 chr11 62595555 62595636 -59248220 + ID4_ SINE ID 2 82 -1 1 1062 203 250 36 0 chr11 62596198 62596254 -59247602 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1 1062 697 306 708 3 chr11 62596377 62596501 -59247355 + L1ME3A LINE L1 5463 5670 -503 1 1062 378 0 0 0 chr11 62596501 62596543 -59247313 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1062 697 294 116 23 chr11 62596543 62596965 -59246891 + L1ME3A LINE L1 5671 6137 -36 1 1062 182 118 29 0 chr11 62596966 62597000 -59246856 + (GGAAA)n Simple_repeat Simple_repeat 2 36 0 1 1062 228 319 14 0 chr11 62598154 62598223 -59245633 + ID4_ SINE ID 2 71 -12 1 1062 290 277 107 0 chr11 62598391 62598503 -59245353 - MurSatRep1 Unknown Unknown -1409 728 605 1 1062 1846 179 116 138 chr11 62598545 62599090 -59244766 + MT2A LTR ERVL 1 533 0 1 1062 447 19 0 0 chr11 62599375 62599427 -59244429 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1062 207 100 0 0 chr11 62599623 62599653 -59244203 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 1062 234 0 0 0 chr11 62601813 62601839 -59242017 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1062 235 354 25 0 chr11 62601840 62601919 -59241937 - MER5A DNA MER1_type -26 163 83 1 1062 1675 141 47 36 chr11 62604361 62604662 -59239194 + MTC LTR MaLR 110 413 -8 1 1062 406 316 9 0 chr11 62604771 62604885 -59238971 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 1062 310 195 13 13 chr11 62605820 62605898 -59237958 + URR1B DNA MER1_type 112 189 -36 1 1062 308 250 20 68 chr11 62606584 62606730 -59237126 + MMSAT4 Satellite Satellite 30 168 0 1 1062 242 326 15 8 chr11 62606849 62606979 -59236877 + MMSAT4 Satellite Satellite 33 163 -5 1 1062 297 200 83 0 chr11 62607732 62607792 -59236064 - ID4 SINE ID -17 66 2 1 1062 1093 89 0 0 chr11 62607852 62607998 -59235858 - B1_Mus2 SINE Alu 0 147 2 1 1062 766 241 57 70 chr11 62608004 62608371 -59235485 + RLTR10D LTR ERVK 1 343 -16 1 1062 467 254 17 0 chr11 62608418 62608536 -59235320 + IAP-d-int LTR ERVK 22 141 -6401 1 1062 7488 287 27 29 chr11 62608561 62611197 -59232659 + IAP-d-int LTR ERVK 3170 5800 -742 1 1062 1666 209 24 15 chr11 62611215 62611738 -59232118 + IAP-d-int LTR ERVK 5910 6542 0 1 1062 880 278 48 42 chr11 62611738 62612095 -59231761 + RLTR10D LTR ERVK 1 359 0 1 1062 183 267 167 0 chr11 62612559 62612619 -59231237 - MIR3 SINE MIR -31 177 108 1 1062 321 26 0 0 chr11 62612677 62612715 -59231141 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1062 1297 84 10 31 chr11 62613989 62614185 -59229671 - B2_Mm1a SINE B2 -1 192 1 2 1062 525 32 0 0 chr11 62614291 62614354 -59229502 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 2 1062 441 0 0 0 chr11 62615019 62615068 -59228788 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1062 785 224 42 0 chr11 62615078 62615270 -59228586 + B3 SINE B2 1 200 -16 2 1062 310 0 0 0 chr11 62615348 62615383 -59228473 - U2 snRNA snRNA -153 35 1 2 1062 22 35 0 0 chr11 62615624 62615653 -59228203 + AT_rich Low_complexity Low_complexity 1 29 0 2 1062 858 281 29 21 chr11 62616145 62616385 -59227471 + B4A SINE B4 33 274 -18 2 1062 192 200 0 0 chr11 62617207 62617257 -59226599 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1062 3274 130 39 67 chr11 62617354 62617562 -59226294 + RLTR20B3 LTR ERVK 1 209 -368 2 1062 1615 133 46 50 chr11 62617562 62617885 -59225971 - RLTRETN_Mm LTR ERVK 0 322 1 2 1062 3274 130 39 67 chr11 62617885 62618270 -59225586 + RLTR20B3 LTR ERVK 210 577 0 2 1062 423 353 136 45 chr11 62618966 62619118 -59224738 - L2 LINE L2 -686 2733 2573 2 1062 1384 179 117 57 chr11 62619118 62619468 -59224388 - ORR1D1 LTR MaLR -1 373 3 2 1062 423 353 136 45 chr11 62619468 62619875 -59223981 - L2 LINE L2 -847 2572 2123 2 1062 712 287 75 0 chr11 62621034 62621208 -59222648 - ID_B1 SINE B4 -35 189 3 2 1062 212 227 0 0 chr11 62621357 62621401 -59222455 + (TGG)n Simple_repeat Simple_repeat 1 44 0 2 1062 2281 84 26 0 chr11 62621887 62622196 -59221660 - ORR1A3 LTR MaLR -8 318 2 2 1062 477 34 0 0 chr11 62623400 62623459 -59220397 + (CAAAC)n Simple_repeat Simple_repeat 1 59 0 2 1062 279 0 0 0 chr11 62623467 62623498 -59220358 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1062 1197 43 0 0 chr11 62623500 62623641 -59220215 - B1_Mus2 SINE Alu -6 141 1 2 1062 361 308 71 107 chr11 62624281 62624590 -59219266 - MER65D LTR ERV1 -96 377 80 2 1062 200 299 60 82 chr11 62624960 62625142 -59218714 - MIRc SINE MIR -75 193 16 2 1062 341 240 39 62 chr11 62625961 62626090 -59217766 + RLTR14 LTR ERV1 224 349 -33 2 1062 396 0 0 0 chr11 62626288 62626332 -59217524 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1062 264 59 59 0 chr11 62627329 62627380 -59216476 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1062 603 295 138 7 chr11 62629502 62629799 -59214057 + L1MB2 LINE L1 5818 6153 -18 2 1062 389 243 18 45 chr11 62630314 62630426 -59213430 + MLT1A1 LTR MaLR 300 408 0 2 1062 183 257 127 14 chr11 62631367 62631438 -59212418 - L3 LINE CR1 -4276 213 135 2 1062 997 247 98 21 chr11 62631958 62632293 -59211563 + MLT1B LTR MaLR 22 382 -8 2 1062 547 300 31 43 chr11 62632558 62632860 -59210996 - LTR31 LTR ERV1 -27 592 234 2 1062 772 286 132 0 chr11 62633021 62633255 -59210601 + B4A SINE B4 1 265 -27 2 1062 315 0 0 0 chr11 62633256 62633291 -59210565 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1062 183 42 0 0 chr11 62633356 62633380 -59210476 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 2 1062 277 174 29 0 chr11 62633489 62633558 -59210298 + GA-rich Low_complexity Low_complexity 2 72 0 2 1062 915 132 0 0 chr11 62634927 62635078 -59208778 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 2 1062 216 0 0 0 chr11 62635128 62635152 -59208704 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1062 230 200 46 77 chr11 62636034 62636099 -59207757 - B4 SINE B4 -2 290 228 2 1062 775 281 36 43 chr11 62636122 62636401 -59207455 - Lx8 LINE L1 -7 7466 7190 2 1062 612 243 7 53 chr11 62636401 62636553 -59207303 - B4 SINE B4 -67 225 81 2 1062 1140 193 18 23 chr11 62636568 62636785 -59207071 - B3 SINE B2 0 216 1 2 1062 714 193 227 0 chr11 62636803 62636979 -59206877 - B3 SINE B2 0 216 1 2 1062 416 256 0 22 chr11 62636980 62637072 -59206784 - B4 SINE B4 -201 91 2 2 1062 198 0 0 0 chr11 62637091 62637113 -59206743 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1062 351 0 0 0 chr11 62638247 62638286 -59205570 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1062 216 0 0 0 chr11 62638286 62638309 -59205547 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1062 237 33 0 0 chr11 62639736 62639766 -59204090 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1062 239 331 36 58 chr11 62640205 62640343 -59203513 - MIRb SINE MIR -25 243 109 2 1062 673 264 43 69 chr11 62640373 62640550 -59203306 - MTEb LTR MaLR -3 376 206 2 1062 471 162 12 36 chr11 62640550 62640633 -59203223 + B3A SINE B2 4 84 -114 2 1062 270 222 0 0 chr11 62640627 62640681 -59203175 - MTEb LTR MaLR -303 56 3 2 1062 1142 219 36 68 chr11 62640681 62640969 -59202887 - MTEb-int LTR MaLR -51 1529 1252 2 1062 31 26 0 0 chr11 62640976 62641014 -59202842 + AT_rich Low_complexity Low_complexity 1 38 0 2 1062 324 0 0 0 chr11 62641014 62641050 -59202806 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1062 523 259 0 18 chr11 62641152 62641262 -59202594 + MTE-int LTR MaLR 294 401 -1179 2 1062 23 0 0 0 chr11 62641288 62641311 -59202545 + AT_rich Low_complexity Low_complexity 1 23 0 2 1062 312 27 0 0 chr11 62641371 62641408 -59202448 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1062 2027 274 122 14 chr11 62641417 62642022 -59201834 - MTEb-int LTR MaLR -449 1131 473 2 1062 564 140 0 0 chr11 62642025 62642118 -59201738 + (TCCC)n Simple_repeat Simple_repeat 2 94 0 2 1062 322 313 120 17 chr11 62642129 62642363 -59201493 - MTEb-int LTR MaLR -1068 512 255 2 1062 1222 196 24 0 chr11 62642883 62643092 -59200764 + B3 SINE B2 3 216 0 2 1062 286 326 116 41 chr11 62643207 62643226 -59200630 - B4 SINE B4 -44 248 91 2 1062 347 266 156 31 chr11 62643226 62643354 -59200502 - B1F SINE Alu 0 149 6 2 1062 381 162 0 0 chr11 62643805 62643873 -59199983 + (CCCA)n Simple_repeat Simple_repeat 1 68 0 2 1062 438 20 0 0 chr11 62644409 62644460 -59199396 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 2 1062 210 271 36 127 chr11 62645393 62645423 -59198433 + B4 SINE B4 75 174 -118 2 1062 366 173 0 32 chr11 62645423 62645503 -59198353 + B1F SINE Alu 13 85 -64 2 1062 756 210 0 0 chr11 62645812 62646173 -59197683 + (TG)n Simple_repeat Simple_repeat 1 361 0 2 1062 182 37 0 36 chr11 62646187 62646215 -59197641 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1062 1111 130 11 22 chr11 62646943 62647124 -59196732 + URR1B DNA MER1_type 47 225 0 2 1062 220 365 13 81 chr11 62648255 62648404 -59195452 + MIR3 SINE MIR 56 194 -14 2 1062 288 0 0 0 chr11 62648500 62648532 -59195324 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1062 407 137 14 0 chr11 62648763 62648836 -59195020 + CT-rich Low_complexity Low_complexity 2 75 0 2 1062 831 261 22 22 chr11 62648836 62649059 -59194797 - ID_B1 SINE B4 0 224 2 2 1062 400 274 39 0 chr11 62649195 62649297 -59194559 - PB1D7 SINE Alu -1 119 14 2 1062 842 120 286 0 chr11 62649885 62650060 -59193796 - URR1A DNA MER1_type 0 226 2 2 1062 322 273 112 38 chr11 62650991 62651151 -59192705 - L1MC4a LINE L1 -15 7867 7696 2 1062 1613 133 65 197 chr11 62651161 62651426 -59192430 - ORR1D1 LTR MaLR 0 374 158 2 1062 1119 114 0 0 chr11 62651426 62651601 -59192255 + (GGA)n Simple_repeat Simple_repeat 2 176 0 2 1062 1613 133 65 197 chr11 62651601 62651766 -59192090 - ORR1D1 LTR MaLR -217 157 2 2 1062 1055 221 134 22 chr11 62651819 62652162 -59191694 - MTD LTR MaLR -14 407 11 2 1062 332 296 10 0 chr11 62652174 62652272 -59191584 - L1MC4a LINE L1 -269 7613 7515 2 132 262 275 62 35 chr11 62652334 62652447 -59191409 - PB1D10 SINE Alu 0 117 2 2 1063 742 244 14 12 chr11 62652453 62652618 -59191238 + B3 SINE B2 41 211 -5 2 1063 330 296 24 79 chr11 62652686 62652851 -59191005 + L1MA8 LINE L1 6131 6286 -5 2 1063 295 363 69 40 chr11 62654795 62654970 -59188886 - MIR SINE MIR -31 237 51 2 1063 195 42 0 0 chr11 62655170 62655194 -59188662 + (CAG)n Simple_repeat Simple_repeat 1 24 0 2 1063 537 259 41 20 chr11 62655980 62656126 -59187730 - B1F SINE Alu 0 149 1 2 1063 406 244 127 6 chr11 62656259 62656424 -59187432 - L1MA6 LINE L1 0 6300 6116 2 1063 290 277 33 67 chr11 62656800 62656920 -59186936 - ID_B1 SINE B4 -107 117 2 2 1063 261 0 0 0 chr11 62656956 62656985 -59186871 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1063 303 28 0 0 chr11 62656985 62657020 -59186836 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1063 222 226 75 0 chr11 62657025 62657078 -59186778 - RSINE1 SINE B4 -24 141 85 2 1063 730 176 13 0 chr11 62657078 62657231 -59186625 + CT-rich Low_complexity Low_complexity 3 157 0 2 1063 297 0 0 0 chr11 62657926 62657959 -59185897 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 2 1063 381 312 18 59 chr11 62657960 62658130 -59185726 - RSINE1 SINE B4 0 165 3 2 1063 414 247 11 0 chr11 62658462 62658551 -59185305 + PB1D10 SINE Alu 21 110 -7 2 1063 257 310 50 58 chr11 62658559 62658676 -59185180 + Tigger7 DNA MER2_type 2216 2331 -160 2 1063 1027 177 85 9 chr11 62658676 62658867 -59184989 + MTD LTR MaLR 1 207 -212 2 1063 512 127 133 16 chr11 62658867 62658981 -59184875 + B1_Mus1 SINE Alu 1 120 0 2 1063 203 125 25 0 chr11 62658996 62659036 -59184820 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1063 956 216 83 37 chr11 62659036 62659071 -59184785 + MTD LTR MaLR 196 230 -191 2 1063 2208 137 113 32 chr11 62659071 62659479 -59184377 - BGLII_B LTR ERVK 0 441 1 2 1063 956 216 83 37 chr11 62659479 62659659 -59184197 + MTD LTR MaLR 231 421 0 2 1063 293 300 59 10 chr11 62659689 62659790 -59184066 + Tigger7 DNA MER2_type 2380 2485 -6 2 1063 341 390 97 0 chr11 62659915 62660110 -59183746 - MIR SINE MIR -43 219 6 2 1063 307 256 60 12 chr11 62662253 62662336 -59181520 - PB1D10 SINE Alu -13 104 18 2 1063 642 267 130 5 chr11 62662436 62662628 -59181228 - B3 SINE B2 0 216 1 2 1063 22 0 0 0 chr11 62663080 62663102 -59180754 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 585 116 21 10 chr11 62663333 62663429 -59180427 + MT2C_Mm LTR ERVL 299 395 -80 2 1063 504 146 0 0 chr11 62663458 62663547 -59180309 + (GGA)n Simple_repeat Simple_repeat 3 91 0 2 1063 435 340 96 18 chr11 62663687 62663906 -59179950 - MER2 DNA MER2_type -19 326 91 2 1063 333 132 43 14 chr11 62664427 62664496 -59179360 - PB1D10 SINE Alu -6 111 41 2 1063 201 39 0 0 chr11 62664988 62665014 -59178842 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2 1063 1388 177 126 56 chr11 62665014 62665416 -59178440 - RMER10A LTR ERVL -10 432 1 3 1063 438 301 18 0 chr11 62665497 62665610 -59178246 - ID_B1 SINE B4 -28 196 82 3 1063 268 333 13 0 chr11 62665909 62665987 -59177869 - ID2 SINE ID -2 81 3 3 1063 619 272 7 0 chr11 62666063 62666199 -59177657 - B4A SINE B4 -154 138 2 3 1063 463 315 62 0 chr11 62667064 62667194 -59176662 + RSINE1 SINE B4 6 143 -22 3 1063 266 263 0 0 chr11 62667305 62667362 -59176494 + ID4_ SINE ID 2 58 -25 3 1063 246 180 0 0 chr11 62668014 62668075 -59175781 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1063 1135 244 115 38 chr11 62668153 62668752 -59175104 - L1MA8 LINE L1 0 6300 5680 3 1063 234 0 0 0 chr11 62669603 62669629 -59174227 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1063 299 337 51 34 chr11 62669686 62669861 -59173995 - Charlie8 DNA MER1_type -2167 261 84 3 1063 324 130 138 138 chr11 62669852 62669932 -59173924 + B1F1 SINE Alu 9 88 -61 3 1063 313 227 291 0 chr11 62669932 62669955 -59173901 + ID_B1 SINE B4 111 224 0 3 1063 283 215 115 46 chr11 62670085 62670177 -59173679 - MIRc SINE MIR -46 162 69 3 1063 2256 175 27 7 chr11 62671665 62672074 -59171782 - MTC LTR MaLR 0 421 5 3 1063 369 131 0 0 chr11 62672268 62672329 -59171527 + (TATG)n Simple_repeat Simple_repeat 2 62 0 3 1063 285 169 43 71 chr11 62672334 62672404 -59171452 - ID4_ SINE ID -12 71 4 3 1063 256 342 45 0 chr11 62672654 62672765 -59171091 + MER94 DNA AcHobo 16 131 -3 3 1063 823 121 0 24 chr11 62673833 62673960 -59169896 - B1_Mus1 SINE Alu 0 148 25 3 1063 22 35 0 0 chr11 62673983 62674012 -59169844 + AT_rich Low_complexity Low_complexity 1 29 0 3 1063 405 0 0 0 chr11 62674133 62674178 -59169678 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1063 244 274 0 0 chr11 62674185 62674258 -59169598 - B3A SINE B2 -20 178 106 3 1063 390 352 123 29 chr11 62674301 62674544 -59169312 - L1ME3B LINE L1 -67 6173 5908 3 1063 392 242 88 16 chr11 62674759 62674865 -59168991 - PB1D10 SINE Alu -22 105 2 3 1063 308 292 104 0 chr11 62674779 62674875 -59168981 - ID_B1 SINE B4 -48 176 71 3 1063 390 342 136 34 chr11 62674897 62675133 -59168723 - L1ME3B LINE L1 -1113 5033 4774 3 1063 215 254 109 16 chr11 62675404 62675468 -59168388 - ID4_ SINE ID -11 72 3 3 1063 807 108 0 0 chr11 62675492 62675612 -59168244 + (TTTTC)n Simple_repeat Simple_repeat 2 121 0 3 1063 540 291 122 11 chr11 62675621 62675802 -59168054 - B4 SINE B4 -91 201 1 3 1063 201 169 16 33 chr11 62676279 62676340 -59167516 + CT-rich Low_complexity Low_complexity 2 61 0 3 1063 474 196 30 20 chr11 62676354 62676453 -59167403 - PB1D10 SINE Alu -13 104 5 3 1063 654 275 17 28 chr11 62676521 62676697 -59167159 - MTE2a LTR MaLR -205 174 1 3 1063 261 351 0 0 chr11 62677526 62677600 -59166256 + MLT1D LTR MaLR 1 74 -431 3 1063 229 246 40 40 chr11 62677570 62677646 -59166210 + ORR1A3-int LTR MaLR 1861 1936 -27 3 1063 272 320 24 70 chr11 62677616 62677771 -59166085 + MLT1A1 LTR MaLR 19 174 -191 3 1063 402 21 0 0 chr11 62677771 62677818 -59166038 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1063 249 322 74 79 chr11 62677818 62677864 -59165992 + MLT1A1 LTR MaLR 175 219 -146 3 1063 549 326 79 60 chr11 62678098 62678464 -59165392 + MLT1D LTR MaLR 76 448 -57 3 1063 1017 287 44 67 chr11 62678617 62678961 -59164895 - MER2 DNA MER2_type -1 344 9 3 1063 1323 69 0 0 chr11 62679649 62679824 -59164032 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 3 1063 551 112 11 0 chr11 62679826 62679915 -59163941 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 3 1063 272 167 0 0 chr11 62679915 62679969 -59163887 + CT-rich Low_complexity Low_complexity 2 55 0 3 1063 881 125 0 35 chr11 62679969 62680110 -59163746 - B1_Mus1 SINE Alu -12 136 1 3 1063 213 154 0 0 chr11 62680113 62680152 -59163704 + T-rich Low_complexity Low_complexity 1 39 0 3 1063 260 304 44 25 chr11 62680263 62680387 -59163469 + MIRm SINE MIR 39 165 -97 3 1063 293 222 23 69 chr11 62681658 62681745 -59162111 - MLT1A1 LTR MaLR 0 408 326 3 1063 428 206 31 52 chr11 62682739 62682836 -59161020 - PB1D10 SINE Alu -11 106 12 3 1063 383 280 68 8 chr11 62683050 62683183 -59160673 + MER117 DNA MER1_type 9 149 -48 3 1063 932 227 14 5 chr11 62683791 62683999 -59159857 - B3 SINE B2 -6 210 1 3 1063 244 176 159 14 chr11 62684608 62684677 -59159179 - ID4_ SINE ID 0 83 5 3 1063 295 219 69 99 chr11 62684683 62684907 -59158949 - L1M4 LINE L1 -2877 3767 3562 3 1063 410 295 171 20 chr11 62685048 62685294 -59158562 - L1M4 LINE L1 -5871 671 389 3 1063 427 299 15 65 chr11 62685390 62685590 -59158266 - L1M4 LINE L1 -6315 227 38 3 1063 907 234 10 63 chr11 62685590 62685961 -59157895 - RMER17C LTR ERVK -325 484 1 3 1063 972 180 0 0 chr11 62686298 62686448 -59157408 + B1_Mur4 SINE Alu 1 150 0 3 1063 183 80 0 0 chr11 62686452 62686477 -59157379 + (ATG)n Simple_repeat Simple_repeat 2 26 0 3 1063 360 0 0 0 chr11 62687425 62687465 -59156391 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1063 1103 101 0 0 chr11 62687573 62687721 -59156135 + B1_Mus1 SINE Alu 1 148 0 3 1063 189 0 0 0 chr11 62687725 62687746 -59156110 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1063 185 125 62 0 chr11 62687786 62687818 -59156038 + MIRm SINE MIR 37 70 -206 3 1063 180 0 0 0 chr11 62687957 62687977 -59155879 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1063 1170 196 11 164 chr11 62688987 62689433 -59154423 - RMER17C LTR ERVK -32 378 1 3 1063 2907 147 73 17 chr11 62689441 62689959 -59153897 - RMER17C-int LTR ERVK 0 3238 2692 3 1063 180 0 0 0 chr11 62692195 62692215 -59151641 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1063 1139 41 0 109 chr11 62693617 62693782 -59150074 + B1_Mus2 SINE Alu 1 147 0 3 1063 207 257 0 0 chr11 62694253 62694323 -59149533 + T-rich Low_complexity Low_complexity 1 70 0 3 1063 265 313 0 0 chr11 62694582 62694649 -59149207 - B1F SINE Alu -74 75 9 3 1063 578 205 26 0 chr11 62695599 62695611 -59148245 - PB1D9 SINE Alu 0 120 109 3 1063 185 0 0 39 chr11 62695611 62695637 -59148219 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 1063 578 205 26 0 chr11 62695637 62695741 -59148115 - PB1D9 SINE Alu -12 108 2 3 1063 366 151 184 11 chr11 62696220 62696307 -59147549 + BC1_Mm scRNA scRNA 12 113 -39 3 1063 749 260 92 12 chr11 62696447 62696696 -59147160 + L1MB8 LINE L1 5852 6120 -58 3 1063 243 333 118 0 chr11 62696711 62696804 -59147052 + PB1D9 SINE Alu 4 107 -13 3 1063 600 210 48 8 chr11 62697732 62697857 -59145999 + B1F2 SINE Alu 5 134 -15 3 1063 2512 147 6 46 chr11 62697858 62698282 -59145574 + MTC LTR MaLR 5 391 -30 3 1063 207 0 0 0 chr11 62699663 62699686 -59144170 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1063 846 134 302 0 chr11 62700667 62700839 -59143017 - URR1A DNA MER1_type -1 225 2 3 1063 2429 190 43 38 chr11 62701063 62701621 -59142235 - RLTR31_Mm LTR ERVK 0 561 1 3 1063 264 209 23 11 chr11 62701982 62702069 -59141787 + CT-rich Low_complexity Low_complexity 1 88 0 3 1063 313 348 113 15 chr11 62702092 62702296 -59141560 - HAL1b LINE L1 -1034 975 752 3 1063 190 327 176 19 chr11 62702296 62702455 -59141401 - L2a LINE L2 0 3426 3243 3 1063 2157 101 6 82 chr11 62703171 62703527 -59140329 - ORR1A4 LTR MaLR 0 329 1 3 1063 861 283 46 18 chr11 62703556 62703840 -59140016 + B4A SINE B4 1 292 0 3 1063 1061 263 73 33 chr11 62704898 62705228 -59138628 + ORR1D2 LTR MaLR 22 364 -6 3 1063 928 185 41 26 chr11 62705678 62705872 -59137984 - B3 SINE B2 -18 198 2 3 1063 894 232 19 33 chr11 62706183 62706397 -59137459 - B3 SINE B2 -5 211 1 3 1063 186 241 33 49 chr11 62706588 62706649 -59137207 - MER5A DNA MER1_type -71 118 59 3 1063 258 219 0 0 chr11 62706832 62706896 -59136960 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1063 614 254 68 34 chr11 62706934 62707081 -59136775 - RSINE1 SINE B4 -2 163 12 3 1063 402 190 242 33 chr11 62707190 62707310 -59136546 - B1_Mur1 SINE Alu -4 145 1 3 1063 4912 166 30 22 chr11 62709073 62709971 -59133885 - Lx5 LINE L1 0 7050 6146 3 1063 233 325 75 25 chr11 62710171 62710291 -59133565 - RMER15 LTR ERVL -15 560 435 3 1063 560 240 58 0 chr11 62711055 62711176 -59132680 - RSINE1 SINE B4 -35 130 3 3 1063 253 356 77 41 chr11 62711324 62711520 -59132336 - MER102a DNA MER1_type -95 235 33 3 1063 1256 92 40 6 chr11 62712695 62712869 -59130987 + B2_Mm2 SINE B2 2 181 -14 3 1063 33 0 0 0 chr11 62713101 62713134 -59130722 + AT_rich Low_complexity Low_complexity 1 33 0 3 1063 8527 29 11 0 chr11 62713134 62714728 -59129128 - L1Md_F3 LINE L1 -19 6565 4954 3 1063 1385 191 67 0 chr11 62714725 62715024 -59128832 - L1Md_A LINE L1 -6192 532 214 3 1063 33 0 0 0 chr11 62715226 62715259 -59128597 + AT_rich Low_complexity Low_complexity 1 33 0 3 1063 214 250 48 95 chr11 62716120 62716204 -59127652 - MIRb SINE MIR -141 127 48 3 1063 423 304 120 45 chr11 62716308 62716508 -59127348 - MLT2C1 LTR ERVL -50 347 133 3 1063 459 259 41 82 chr11 62716501 62716623 -59127233 - PB1D7 SINE Alu -2 118 2 3 1063 250 233 128 0 chr11 62716645 62716731 -59127125 - MLT2C1 LTR ERVL -287 110 14 3 1063 1488 146 208 22 chr11 62717203 62717377 -59126479 - ORR1C2 LTR MaLR 0 384 191 3 1063 536 42 14 0 chr11 62717377 62717448 -59126408 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 1063 1488 146 208 22 chr11 62717448 62717595 -59126261 - ORR1C2 LTR MaLR -194 190 5 3 1063 699 170 96 0 chr11 62717949 62718084 -59125772 + B1_Mus1 SINE Alu 1 148 0 3 1063 22 0 0 0 chr11 62718084 62718106 -59125750 + AT_rich Low_complexity Low_complexity 1 22 0 3 1063 628 144 19 19 chr11 62719233 62719339 -59124517 + MTEb LTR MaLR 10 115 -264 3 1063 1466 169 38 47 chr11 62719341 62719684 -59124172 + ORR1A1 LTR MaLR 1 370 -8 3 1063 665 235 7 42 chr11 62719938 62720080 -59123776 + B1_Mur2 SINE Alu 12 148 -1 4 1063 1771 182 45 16 chr11 62720296 62720675 -59123181 + RMER17C LTR ERVK 1 390 -20 4 1063 1079 217 0 0 chr11 62720790 62720993 -59122863 - B3 SINE B2 -9 207 5 4 1063 351 276 123 21 chr11 62721068 62721353 -59122503 - L1M5 LINE L1 -1481 4665 4352 4 1063 27 73 0 0 chr11 62721572 62721627 -59122229 + AT_rich Low_complexity Low_complexity 1 55 0 4 1063 595 269 102 22 chr11 62722272 62722595 -59121261 + MLT1B LTR MaLR 24 386 -4 4 1063 506 290 73 103 chr11 62723438 62723807 -59120049 + ORR1E LTR MaLR 1 358 -1 4 1063 509 173 0 0 chr11 62723807 62723887 -59119969 + PB1D10 SINE Alu 24 103 -14 4 1063 417 299 159 78 chr11 62724149 62724494 -59119362 - MTE2a LTR MaLR -4 375 3 4 1063 195 69 0 0 chr11 62725462 62725491 -59118365 + (GTTTG)n Simple_repeat Simple_repeat 4 32 0 4 1063 432 283 14 14 chr11 62725758 62725898 -59117958 + Tigger5 DNA MER2_type 2236 2375 -31 4 1063 1148 221 86 42 chr11 62726297 62726633 -59117223 + ORR1D2 LTR MaLR 6 356 -14 4 1063 1267 94 50 11 chr11 62726638 62726820 -59117036 - B2_Mm1t SINE B2 -3 190 2 4 1063 309 329 19 19 chr11 62727018 62727179 -59116677 + MER5A DNA MER1_type 2 162 -27 4 1063 411 21 0 0 chr11 62728030 62728078 -59115778 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1063 563 206 9 27 chr11 62728425 62728535 -59115321 + PB1D10 SINE Alu 1 108 -9 4 1063 834 218 70 48 chr11 62728615 62728745 -59115111 - ORR1D2 LTR MaLR -4 415 234 4 1063 747 78 0 0 chr11 62728745 62728848 -59115008 + (GAA)n Simple_repeat Simple_repeat 3 105 0 4 1063 834 283 19 103 chr11 62728848 62729102 -59114754 - ORR1D2 LTR MaLR -137 233 11 4 1063 521 325 45 95 chr11 62729229 62729607 -59114249 + ORR1E LTR MaLR 1 359 0 4 1063 308 255 75 0 chr11 62729964 62730058 -59113798 + Tigger5 DNA MER2_type 142 242 -2164 4 1063 310 282 45 0 chr11 62730055 62730165 -59113691 + Tigger5 DNA MER2_type 2292 2406 0 4 1063 423 0 0 0 chr11 62730359 62730406 -59113450 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1063 402 21 0 0 chr11 62731262 62731309 -59112547 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1063 2710 149 12 5 chr11 62732025 62732443 -59111413 + MTC LTR MaLR 1 421 0 4 1063 803 218 11 53 chr11 62733219 62733408 -59110448 + B3A SINE B2 18 198 0 4 1063 669 92 0 0 chr11 62734408 62734506 -59109350 + (GGA)n Simple_repeat Simple_repeat 3 100 0 4 1063 195 100 0 0 chr11 62734534 62734564 -59109292 + (CCA)n Simple_repeat Simple_repeat 2 31 0 4 1063 266 288 25 12 chr11 62734889 62734970 -59108886 + GA-rich Low_complexity Low_complexity 2 83 0 4 1063 403 276 118 1 chr11 62736309 62736520 -59107336 + MIR SINE MIR 12 260 -8 4 1063 392 198 23 11 chr11 62736711 62736798 -59107058 + MLT1J2 LTR MaLR 1 88 -360 4 1063 484 291 107 10 chr11 62737373 62737578 -59106278 + L1MA5 LINE L1 6054 6278 -22 4 1063 326 321 18 27 chr11 62738623 62738735 -59105121 - MTEb LTR MaLR -18 361 251 4 1063 293 280 83 0 chr11 62738784 62738916 -59104940 - MTEb LTR MaLR -227 143 1 4 1063 254 254 49 113 chr11 62739566 62739708 -59104148 - MER20 DNA MER1_type -84 135 3 4 1063 1018 191 72 5 chr11 62739910 62740105 -59103751 + B3 SINE B2 5 212 -4 4 1063 199 0 0 61 chr11 62740205 62740238 -59103618 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1063 2377 134 164 83 chr11 62740571 62740916 -59102940 + RMER6C LTR ERVK 1 323 -367 4 1063 744 61 0 0 chr11 62740916 62741014 -59102842 + (GA)n Simple_repeat Simple_repeat 2 99 0 4 1063 2377 164 138 66 chr11 62741014 62741486 -59102370 + RMER6C LTR ERVK 311 720 0 4 1063 1125 54 0 7 chr11 62741695 62741844 -59102012 - L1Md_F2 LINE L1 -12 6570 6423 4 1063 829 194 134 0 chr11 62741906 62742092 -59101764 + B3 SINE B2 1 211 -5 4 1063 241 289 159 21 chr11 62742168 62742313 -59101543 - MLT1B LTR MaLR -8 382 218 4 1063 754 150 0 84 chr11 62742499 62742666 -59101190 - L1Md_F3 LINE L1 0 6584 6432 4 1063 1746 117 59 87 chr11 62743862 62744217 -59099639 - ORR1B1 LTR MaLR 0 394 50 4 1063 187 311 124 66 chr11 62744556 62744814 -59099042 - L2c LINE L2 -69 3318 3046 4 1063 396 0 0 0 chr11 62745501 62745545 -59098311 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1063 387 0 0 0 chr11 62745545 62745587 -59098269 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1063 494 255 97 82 chr11 62746050 62746319 -59097537 - L1MB8 LINE L1 -143 6035 5763 4 1063 201 314 79 11 chr11 62746326 62746503 -59097353 - L2c LINE L2 -576 2843 2655 4 1063 193 211 88 0 chr11 62746506 62746563 -59097293 + L2 LINE L2 2230 2291 -1128 4 1063 369 0 0 0 chr11 62746577 62746618 -59097238 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1063 954 236 23 101 chr11 62746657 62746718 -59097138 - B4A SINE B4 -9 283 221 4 1063 894 181 128 0 chr11 62746718 62746906 -59096950 - B3 SINE B2 0 216 5 4 1063 954 236 23 101 chr11 62746906 62747150 -59096706 - B4A SINE B4 -72 220 2 4 1063 555 281 101 11 chr11 62747175 62747391 -59096465 + MLT1A0 LTR MaLR 8 239 -126 4 1063 313 329 20 0 chr11 62747851 62747997 -59095859 + L1MD3 LINE L1 5753 5901 -2094 4 1063 1357 78 0 5 chr11 62747999 62748191 -59095665 - MTB LTR MaLR 0 400 210 4 1063 299 269 77 0 chr11 62748440 62748544 -59095312 - ORR1E LTR MaLR -2 357 246 4 1063 279 0 0 0 chr11 62749522 62749553 -59094303 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 4 1063 474 204 0 0 chr11 62749553 62749656 -59094200 + (CA)n Simple_repeat Simple_repeat 1 103 0 4 1063 248 158 0 0 chr11 62749656 62749694 -59094162 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 4 1063 1270 217 83 24 chr11 62749735 62750170 -59093686 - MT2A LTR ERVL -49 552 3 4 1063 411 21 0 0 chr11 62750176 62750224 -59093632 + (TAG)n Simple_repeat Simple_repeat 2 49 0 4 1063 414 121 0 0 chr11 62750224 62750290 -59093566 + (TATG)n Simple_repeat Simple_repeat 1 66 0 4 1063 933 168 0 0 chr11 62750292 62750471 -59093385 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1063 382 265 65 14 chr11 62750674 62750812 -59093044 + MLT1A0 LTR MaLR 218 362 -105 4 1063 564 217 104 0 chr11 62751024 62751139 -59092717 - B1_Mur2 SINE Alu -14 135 9 4 1063 318 273 83 0 chr11 62751146 62751278 -59092578 - MLT1C LTR MaLR -37 430 288 4 1063 1185 110 122 20 chr11 62751779 62751983 -59091873 + URR1A DNA MER1_type 2 226 0 4 1063 260 300 18 35 chr11 62752568 62752682 -59091174 + MTEa LTR MaLR 252 363 -16 4 1063 191 242 94 31 chr11 62753236 62753300 -59090556 + MIRb SINE MIR 195 262 -6 4 1063 29 0 0 0 chr11 62754161 62754190 -59089666 + AT_rich Low_complexity Low_complexity 1 29 0 4 1063 594 241 34 151 chr11 62754231 62754436 -59089420 - B3A SINE B2 -16 182 2 4 1063 269 301 116 32 chr11 62755251 62755467 -59088389 - LTR52 LTR ERVL -40 381 148 4 1063 253 260 57 86 chr11 62755513 62755618 -59088238 + B1F SINE Alu 46 147 -2 4 1063 252 212 0 0 chr11 62755618 62755684 -59088172 + (CCAA)n Simple_repeat Simple_repeat 4 69 0 4 1063 1360 270 106 45 chr11 62755911 62756216 -59087640 - L1MA7 LINE L1 -200 6091 5767 4 1063 198 0 0 0 chr11 62756216 62756238 -59087618 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1063 1360 270 106 45 chr11 62756238 62756662 -59087194 - L1MA7 LINE L1 -525 5766 5318 4 1063 766 270 22 11 chr11 62757689 62757869 -59085987 - B3A SINE B2 -16 182 1 4 1063 243 0 0 0 chr11 62757915 62757942 -59085914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1063 681 148 116 54 chr11 62757942 62758071 -59085785 - B1_Mur4 SINE Alu -11 139 3 4 1063 263 146 0 18 chr11 62758213 62758269 -59085587 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1063 414 0 0 0 chr11 62758394 62758440 -59085416 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1063 306 0 0 0 chr11 62758440 62758473 -59085383 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1063 572 264 172 24 chr11 62758662 62758953 -59084903 - L1MB7 LINE L1 -10 6174 5841 4 1063 307 384 20 29 chr11 62758985 62759229 -59084627 + MIR SINE MIR 6 247 -15 4 1063 449 0 36 0 chr11 62759372 62759428 -59084428 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 4 1063 2728 198 21 30 chr11 62760973 62761262 -59082594 + RLTR20D LTR ERVK 5 297 -271 4 1063 1145 87 109 11 chr11 62761262 62761437 -59082419 + B2_Mm2 SINE B2 2 193 -2 4 1063 2728 198 21 30 chr11 62761437 62761716 -59082140 + RLTR20D LTR ERVK 298 568 0 4 1063 643 244 34 21 chr11 62761793 62762032 -59081824 + RLTR15 LTR ERVK 45 286 -73 4 1063 421 221 10 10 chr11 62762354 62762450 -59081406 - B3 SINE B2 -119 97 2 4 1063 445 47 31 0 chr11 62763071 62763135 -59080721 - ORR1C2 LTR MaLR 0 384 319 4 1063 455 0 18 0 chr11 62763458 62763513 -59080343 + (CTATA)n Simple_repeat Simple_repeat 1 56 0 4 1063 806 180 0 0 chr11 62765121 62765249 -59078607 - B3 SINE B2 -86 130 3 4 1063 580 234 57 0 chr11 62765283 62765424 -59078432 + B1_Mur1 SINE Alu 1 149 0 4 1063 544 266 24 0 chr11 62765817 62765941 -59077915 + B1F1 SINE Alu 2 128 -21 4 1063 270 0 0 0 chr11 62766023 62766053 -59077803 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1063 204 218 36 18 chr11 62766433 62766489 -59077367 + MIRm SINE MIR 31 87 -189 4 1063 192 27 81 0 chr11 62766805 62766842 -59077014 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1063 308 298 20 0 chr11 62766878 62767029 -59076827 + (TG)n Simple_repeat Simple_repeat 1 154 0 4 1063 236 212 95 57 chr11 62767106 62767211 -59076645 - B1F SINE Alu -19 130 22 4 1063 246 212 105 12 chr11 62767938 62768024 -59075832 - MIRc SINE MIR -134 134 41 4 1063 276 30 0 0 chr11 62768189 62768222 -59075634 + (C)n Simple_repeat Simple_repeat 1 33 0 4 1063 503 252 0 0 chr11 62769110 62769213 -59074643 + RSINE1 SINE B4 3 105 -60 4 1063 184 77 25 25 chr11 62769255 62769295 -59074561 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 4 1063 253 322 53 53 chr11 62769325 62769476 -59074380 - RMER12 LTR ERVK -61 1261 1111 4 1063 5126 81 22 20 chr11 62769766 62770569 -59073287 - RLTR22_Mur LTR ERVK -1043 805 1 4 1063 1197 68 0 0 chr11 62770651 62770798 -59073058 + B1_Mus2 SINE Alu 1 147 0 5 1063 473 29 0 54 chr11 62770851 62770925 -59072931 - B1_Mus2 SINE Alu 0 147 78 5 1063 1140 43 43 0 chr11 62771133 62771273 -59072583 + B1_Mus1 SINE Alu 3 148 0 5 1063 186 43 0 0 chr11 62771273 62771296 -59072560 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1063 312 354 58 61 chr11 62771396 62771775 -59072081 - L1M5 LINE L1 -1312 4834 4457 5 1063 241 414 0 9 chr11 62771972 62772084 -59071772 + MIRc SINE MIR 36 146 -122 5 1063 1100 123 146 49 chr11 62773333 62773538 -59070318 + URR1B DNA MER1_type 1 225 0 5 1063 207 94 0 0 chr11 62773952 62773984 -59069872 + MER5A DNA MER1_type 44 75 -114 5 1063 1242 100 0 0 chr11 62773986 62774166 -59069690 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1063 428 51 0 17 chr11 62774166 62774226 -59069630 + (TCC)n Simple_repeat Simple_repeat 2 60 0 5 1063 870 123 71 35 chr11 62774230 62774399 -59069457 - B2_Mm2 SINE B2 -18 177 3 5 1063 383 301 0 0 chr11 62774400 62774493 -59069363 + MER5A DNA MER1_type 62 154 -35 5 1063 842 246 5 39 chr11 62774887 62775090 -59068766 + B3A SINE B2 1 196 -2 5 1063 210 316 48 61 chr11 62775285 62775450 -59068406 - L2 LINE L2 -530 2889 2727 5 1063 267 330 35 0 chr11 62775535 62775650 -59068206 + MIR SINE MIR 90 208 -54 5 1063 454 138 181 0 chr11 62775854 62775948 -59067908 + B1_Mus1 SINE Alu 28 138 -10 5 1063 450 0 0 0 chr11 62775948 62775998 -59067858 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1063 459 0 0 0 chr11 62776003 62776054 -59067802 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1063 1348 131 46 18 chr11 62776596 62776814 -59067042 + URR1B DNA MER1_type 1 224 -1 5 1063 351 242 37 22 chr11 62777315 62777450 -59066406 - Lx9 LINE L1 -127 7517 7381 5 1063 4049 240 23 59 chr11 62777452 62778302 -59065554 - L1_Rod LINE L1 -752 5095 4275 5 1063 686 206 42 7 chr11 62778302 62778444 -59065412 - B1_Mur3 SINE Alu -2 147 1 5 1063 4049 240 23 59 chr11 62778444 62778885 -59064971 - L1_Rod LINE L1 -1573 4274 3850 5 1063 522 0 0 0 chr11 62779165 62779223 -59064633 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1063 241 149 64 0 chr11 62779433 62779480 -59064376 - L1_Rod LINE L1 -942 4905 4856 5 1063 285 161 0 43 chr11 62779477 62779546 -59064310 - L1MC LINE L1 -1288 4858 4793 5 1063 593 280 112 89 chr11 62779546 62779857 -59063999 - MTE2b LTR MaLR -66 313 1 5 1063 459 155 0 0 chr11 62779877 62779961 -59063895 + CT-rich Low_complexity Low_complexity 1 84 0 5 132 42080 3 0 0 chr11 62781846 62788205 -59055651 - L1Md_A LINE L1 0 6582 223 5 1064 969 261 103 69 chr11 62788445 62788795 -59055061 - MTEa LTR MaLR 0 379 18 5 1064 329 298 119 95 chr11 62789063 62789315 -59054541 - MLT1F2 LTR MaLR -71 489 232 5 1064 771 337 25 11 chr11 62789378 62789657 -59054199 + B4A SINE B4 1 283 -9 5 1064 190 274 48 0 chr11 62789833 62789895 -59053961 - MIRc SINE MIR -132 136 72 5 1064 1297 266 72 47 chr11 62789901 62790305 -59053551 - MTD LTR MaLR -14 405 1 5 1064 420 20 0 0 chr11 62790508 62790557 -59053299 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1064 432 55 0 0 chr11 62790595 62790650 -59053206 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1064 683 132 35 9 chr11 62792783 62792898 -59050958 + RLTR11A LTR ERVK 411 528 0 5 1064 1428 139 5 0 chr11 62793044 62793260 -59050596 - URR1B DNA MER1_type -2 223 7 5 1064 638 259 25 87 chr11 62793260 62793285 -59050571 + CYRA11_Mm Unknown Y-chromosome 173 398 -219 5 1064 519 17 0 0 chr11 62793535 62793595 -59050261 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1064 202 341 23 0 chr11 62793936 62794024 -59049832 + (TATG)n Simple_repeat Simple_repeat 1 90 0 5 1064 2306 181 22 19 chr11 62794060 62794476 -59049380 - MTD LTR MaLR 0 419 3 5 1064 190 296 139 38 chr11 62794894 62795052 -59048804 - L2 LINE L2 -961 2458 2285 5 1064 931 62 141 0 chr11 62795725 62795853 -59048003 - B1_Mus1 SINE Alu -1 147 2 5 1064 437 196 35 70 chr11 62795878 62795993 -59047863 - PB1D10 SINE Alu 0 117 7 5 1064 244 213 0 62 chr11 62795940 62796005 -59047851 - B4A SINE B4 -149 143 83 5 1064 314 312 112 19 chr11 62796397 62796557 -59047299 + L1ME4a LINE L1 5694 5868 -256 5 1064 214 217 0 28 chr11 62799406 62799477 -59044379 + G-rich Low_complexity Low_complexity 2 70 0 5 1064 640 240 283 37 chr11 62800575 62800906 -59042950 - MTC LTR MaLR -17 404 3 5 1064 342 0 0 0 chr11 62801677 62801715 -59042141 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1064 221 305 209 0 chr11 62801771 62801876 -59041980 + L3 LINE CR1 4334 4460 -29 5 1064 2060 143 63 14 chr11 62802118 62802466 -59041390 - ORR1B2 LTR MaLR 0 367 3 5 1064 379 247 52 105 chr11 62802692 62802864 -59040992 + MER5A1 DNA MER1_type 4 166 0 5 1064 244 254 119 0 chr11 62802873 62802932 -59040924 + MER5A DNA MER1_type 1 66 -123 5 1064 616 281 44 22 chr11 62804054 62804236 -59039620 - Tigger7 DNA MER2_type 0 2491 2306 5 1064 423 83 0 0 chr11 62805055 62805115 -59038741 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 5 1064 272 331 93 86 chr11 62805126 62805288 -59038568 - ID_B1 SINE B4 -55 169 7 5 1064 403 303 38 8 chr11 62805390 62805523 -59038333 + MER2 DNA MER2_type 120 256 -89 5 1064 421 202 37 22 chr11 62805548 62805651 -59038205 - B1F SINE Alu -6 111 5 5 1064 468 0 0 0 chr11 62805831 62805883 -59037973 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1064 598 274 161 91 chr11 62806895 62807424 -59036432 - LTR50 LTR ERVL -222 573 8 5 1064 2001 145 6 66 chr11 62807491 62807839 -59036017 + ORR1A4 LTR MaLR 1 327 -2 5 1064 350 140 0 0 chr11 62807841 62807898 -59035958 + ORR1A4-int LTR MaLR 5 61 -1731 5 1064 315 340 67 26 chr11 62808277 62808470 -59035386 + LTR88b LTR Gypsy? 636 836 -1 5 1064 198 0 0 0 chr11 62809512 62809534 -59034322 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1064 180 0 0 0 chr11 62810860 62810880 -59032976 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1064 326 260 19 28 chr11 62811903 62812010 -59031846 + CT-rich Low_complexity Low_complexity 3 108 0 5 1064 448 242 153 31 chr11 62812785 62812981 -59030875 - MER2 DNA MER2_type -119 226 7 5 1064 221 339 119 0 chr11 62813580 62813698 -59030158 - MER91B DNA Tip100 -58 132 1 5 1064 453 236 29 0 chr11 62813795 62813899 -59029957 + B3 SINE B2 1 112 -86 5 1064 754 194 28 0 chr11 62814344 62814488 -59029368 + B1_Mus1 SINE Alu 1 148 0 5 1064 427 257 38 0 chr11 62814741 62814846 -59029010 + B4A SINE B4 123 231 -61 5 1064 265 253 161 52 chr11 62814849 62815041 -59028815 + Lx8 LINE L1 7256 7468 -5 5 1064 240 35 0 0 chr11 62815120 62815149 -59028707 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1064 572 306 122 28 chr11 62815332 62815765 -59028091 + L2a LINE L2 2933 3406 -20 5 1064 5389 102 7 75 chr11 62816062 62816927 -59026929 + RLTR13D1 LTR ERVK 1 806 0 5 1064 379 290 28 18 chr11 62817142 62817251 -59026605 + MTEa LTR MaLR 263 372 -7 5 1064 184 254 132 116 chr11 62818338 62818467 -59025389 - MIRb SINE MIR -24 244 114 5 1064 23 0 0 0 chr11 62818650 62818673 -59025183 + AT_rich Low_complexity Low_complexity 1 23 0 5 1064 637 54 39 45 chr11 62819376 62819530 -59024326 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 5 1064 183 164 49 0 chr11 62819541 62819602 -59024254 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5 1064 215 125 25 0 chr11 62819883 62819923 -59023933 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 5 1064 1753 166 70 6 chr11 62819931 62820247 -59023609 - ORR1D1 LTR MaLR -36 338 3 5 1064 5384 109 14 0 chr11 62820769 62821496 -59022360 - RMER19A LTR ERVK 0 737 1 5 1064 1146 208 103 20 chr11 62821971 62822247 -59021609 + MTD LTR MaLR 71 401 -18 5 1064 384 362 80 6 chr11 62822231 62822406 -59021450 + MER2 DNA MER2_type 158 345 0 5 1064 432 0 0 0 chr11 62822441 62822489 -59021367 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 5 1064 183 80 0 0 chr11 62822595 62822620 -59021236 + (GGGTG)n Simple_repeat Simple_repeat 1 25 0 5 1064 604 307 64 15 chr11 62822801 62823003 -59020853 + MLT1B LTR MaLR 14 225 -165 5 1064 967 117 92 12 chr11 62823071 62823235 -59020621 + URR1B DNA MER1_type 49 225 0 5 1064 327 233 102 62 chr11 62823235 62823358 -59020498 + MLT1B LTR MaLR 332 459 -8 5 1064 1426 33 14 0 chr11 62824148 62824360 -59019496 + (TCTA)n Simple_repeat Simple_repeat 1 214 0 5 1064 201 74 0 0 chr11 62824386 62824413 -59019443 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 5 1064 564 319 57 9 chr11 62824472 62824700 -59019156 + L1MA5 LINE L1 6062 6300 0 5 1064 750 301 9 41 chr11 62824725 62824943 -59018913 + B3 SINE B2 1 211 -5 5 1064 1375 0 30 0 chr11 62825565 62825768 -59018088 + (TCTA)n Simple_repeat Simple_repeat 1 209 0 5 1064 1333 11 29 0 chr11 62825790 62825965 -59017891 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1064 240 200 91 26 chr11 62826464 62826541 -59017315 - LTR90B LTR LTR -80 716 635 5 1064 258 106 0 0 chr11 62827323 62827370 -59016486 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 5 1064 644 207 26 58 chr11 62827371 62827525 -59016331 - B1_Mur4 SINE Alu -1 149 1 5 1064 846 295 9 35 chr11 62827766 62828082 -59015774 - L1_Rod LINE L1 -2 5845 5538 5 1064 582 28 0 0 chr11 62828086 62828158 -59015698 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1064 655 267 56 0 chr11 62828169 62828330 -59015526 - B3A SINE B2 -28 170 1 5 1064 512 186 59 0 chr11 62828330 62828432 -59015424 - L1_Mur3 LINE L1 -561 5607 5500 5 1064 205 257 14 14 chr11 62828563 62828634 -59015222 + C-rich Low_complexity Low_complexity 2 72 0 5 1064 957 307 69 82 chr11 62828929 62830198 -59013658 - L1_Mur3 LINE L1 -399 5481 4280 5 1064 1437 253 70 33 chr11 62830196 62830650 -59013206 - L1MB3 LINE L1 -30 6153 5683 5 1064 292 315 54 0 chr11 62830744 62830836 -59013020 - L1MD2 LINE L1 -196 6163 6067 6 1064 338 279 49 103 chr11 62831137 62831341 -59012515 - MER33 DNA MER1_type -73 251 59 6 1064 858 290 20 82 chr11 62833600 62833991 -59009865 - MLT1B LTR MaLR -7 383 17 6 1064 239 237 14 180 chr11 62835074 62835213 -59008643 + MT2A LTR ERVL 2 117 -416 6 1064 1253 188 154 15 chr11 62835100 62835425 -59008431 + MTD LTR MaLR 36 405 -14 6 1064 452 177 13 0 chr11 62836519 62836598 -59007258 + ID4_ SINE ID 4 83 0 6 1064 397 293 131 47 chr11 62836802 62837038 -59006818 + HAL1 LINE L1 252 507 -2000 6 1064 231 190 59 71 chr11 62838250 62838335 -59005521 - L1MB3 LINE L1 -30 6153 6070 6 1064 23 0 0 0 chr11 62842605 62842628 -59001228 + AT_rich Low_complexity Low_complexity 1 23 0 6 1064 761 300 19 45 chr11 62843271 62843585 -59000271 - ORR1E LTR MaLR -45 314 9 6 1064 241 95 48 0 chr11 62844058 62844121 -58999735 - MT2A LTR ERVL 0 533 468 6 1064 2353 176 18 55 chr11 62844210 62844698 -58999158 - MT2A LTR ERVL -56 477 8 6 1064 281 276 0 26 chr11 62844629 62844707 -58999149 - MTEa LTR MaLR -303 76 1 6 1064 249 325 67 49 chr11 62844921 62845144 -58998712 - L1MC LINE L1 -2212 5830 5604 6 1064 489 242 202 112 chr11 62845158 62845568 -58998288 - L1MD1 LINE L1 -6 6236 5790 6 1064 380 203 120 125 chr11 62845662 62845694 -58998162 - RLTR11B LTR ERVK -22 431 393 6 1064 225 0 0 0 chr11 62845694 62845719 -58998137 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 6 1064 380 203 120 125 chr11 62845719 62845894 -58997962 - RLTR11B LTR ERVK -61 392 225 6 1064 753 230 16 58 chr11 62845934 62846205 -58997651 - RLTR11B LTR ERVK -273 255 1 6 1064 832 279 76 7 chr11 62846209 62846718 -58997138 - L1MD1 LINE L1 -419 5760 5197 6 1064 494 285 117 17 chr11 62846742 62847042 -58996814 - L1M4 LINE L1 -579 5595 5266 6 1064 2410 179 17 2 chr11 62847837 62848252 -58995604 + MTC LTR MaLR 1 421 0 6 1064 290 256 41 49 chr11 62848562 62848685 -58995171 + MIRb SINE MIR 27 148 -120 6 1064 361 326 62 26 chr11 62849599 62849791 -58994065 - MIRb SINE MIR 0 262 64 6 1064 412 283 27 7 chr11 62850386 62850532 -58993324 - L1MA7 LINE L1 -8 6283 6135 6 1064 419 159 29 0 chr11 62850543 62850612 -58993244 - ID4_ SINE ID -11 72 2 6 1064 424 270 54 31 chr11 62850668 62850798 -58993058 - RSINE1 SINE B4 -28 137 5 6 1064 519 290 104 22 chr11 62851035 62851257 -58992599 - MER2 DNA MER2_type -14 331 92 6 1064 410 270 20 0 chr11 62851459 62851559 -58992297 + PB1D10 SINE Alu 3 104 -13 6 1064 259 320 31 31 chr11 62852823 62852952 -58990904 - MIR SINE MIR -23 239 111 6 1064 26 0 0 0 chr11 62854640 62854666 -58989190 + AT_rich Low_complexity Low_complexity 1 26 0 6 1064 22 0 0 0 chr11 62854724 62854746 -58989110 + AT_rich Low_complexity Low_complexity 1 22 0 6 1064 518 228 0 0 chr11 62854818 62854910 -58988946 + PB1D9 SINE Alu 2 93 -27 6 1064 272 192 0 151 chr11 62854833 62854919 -58988937 + MT2B LTR ERVL 181 253 -348 6 1064 580 283 66 17 chr11 62855054 62855295 -58988561 - L1MB3 LINE L1 -139 6044 5792 6 1064 1580 205 81 18 chr11 62856099 62856482 -58987374 - MTD LTR MaLR 0 419 13 6 1064 579 29 0 0 chr11 62856760 62856829 -58987027 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 6 1064 222 330 129 28 chr11 62857469 62857647 -58986209 + MIRc SINE MIR 39 237 -31 6 1064 756 322 42 13 chr11 62857849 62858088 -58985768 - Lx8 LINE L1 -639 6834 6589 6 1064 281 238 0 0 chr11 62858105 62858168 -58985688 - Lx8 LINE L1 -988 6485 6423 6 1064 335 255 78 78 chr11 62858203 62858420 -58985436 - L1M2 LINE L1 -2241 3902 3686 6 1064 645 303 15 0 chr11 62858554 62858752 -58985104 - MER2 DNA MER2_type -12 333 133 6 1064 608 256 5 26 chr11 62858852 62859036 -58984820 + B3A SINE B2 43 216 0 6 1064 765 223 82 5 chr11 62859041 62859248 -58984608 + RCHARR1 DNA MER1_type 747 969 -5 6 1064 318 244 121 8 chr11 62859247 62859371 -58984485 - MER2 DNA MER2_type -206 139 2 6 1064 1757 229 37 2 chr11 62860765 62861168 -58982688 - MTD LTR MaLR -2 417 1 6 1064 232 139 0 0 chr11 62861443 62861486 -58982370 - RMER19C LTR ERVK 0 611 569 6 1064 617 227 83 0 chr11 62862139 62862271 -58981585 - B1_Mur1 SINE Alu -5 144 2 6 1064 311 227 16 134 chr11 62862163 62862290 -58981566 - MT2B LTR ERVL -338 263 152 6 1064 420 311 27 5 chr11 62862413 62862598 -58981258 - L1M1 LINE L1 -613 5687 5496 6 1064 891 248 87 171 chr11 62863256 62863670 -58980186 - MTEa LTR MaLR 0 379 1 6 1064 183 42 0 0 chr11 62864969 62864993 -58978863 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1064 24 0 0 0 chr11 62865410 62865434 -58978422 + AT_rich Low_complexity Low_complexity 1 24 0 6 1064 357 229 69 0 chr11 62867538 62867631 -58976225 - PB1D7 SINE Alu -15 105 7 6 1064 362 315 57 57 chr11 62867629 62867804 -58976052 - MER63B DNA AcHobo -31 405 231 6 1064 194 256 125 23 chr11 62869158 62869246 -58974610 - L2b LINE L2 -93 3282 3186 6 1064 510 96 0 0 chr11 62870146 62870219 -58973637 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1064 188 286 18 0 chr11 62871032 62871088 -58972768 - L2b LINE L2 -694 2725 2669 6 1064 765 244 51 21 chr11 62871393 62871628 -58972228 + L1MA8 LINE L1 5508 5749 -542 6 1064 1619 219 42 8 chr11 62871628 62872029 -58971827 - MTD LTR MaLR 0 419 5 6 1064 296 211 0 0 chr11 62872089 62872146 -58971710 + L1MA8 LINE L1 6206 6262 -29 6 1064 982 126 11 6 chr11 62872858 62873034 -58970822 + (GGGAA)n Simple_repeat Simple_repeat 1 177 0 6 1064 625 216 8 8 chr11 62876837 62876954 -58966902 - B1_Mur1 SINE Alu -29 120 4 6 1064 388 282 34 0 chr11 62877206 62877323 -58966533 - RSINE1 SINE B4 -44 121 1 6 1064 382 252 236 13 chr11 62877333 62877566 -58966290 - L1M5 LINE L1 -2773 3373 3089 6 1064 447 71 14 28 chr11 62877612 62877684 -58966172 + B1_Mur4 SINE Alu 79 149 -1 6 1064 407 301 47 8 chr11 62877742 62878006 -58965850 - L1M5 LINE L1 -3087 3059 2784 6 1064 348 293 10 0 chr11 62878091 62878190 -58965666 - L1M5 LINE L1 -3571 2575 2476 6 1064 21 36 0 0 chr11 62878223 62878251 -58965605 + AT_rich Low_complexity Low_complexity 1 28 0 6 1064 503 258 12 37 chr11 62878254 62878415 -58965441 - RSINE1 SINE B4 -2 163 7 6 1064 383 325 110 0 chr11 62878445 62878608 -58965248 - L1MEc LINE L1 -3756 2563 2383 6 1064 203 203 17 0 chr11 62878793 62878852 -58965004 + CT-rich Low_complexity Low_complexity 3 62 0 6 1064 279 0 0 0 chr11 62878877 62878908 -58964948 + (TTA)n Simple_repeat Simple_repeat 2 32 0 6 1064 263 360 60 22 chr11 62879115 62879297 -58964559 - Charlie1b DNA MER1_type -328 195 7 6 1064 356 274 149 39 chr11 62879395 62879708 -58964148 - L1MEc LINE L1 -4363 2037 1686 6 1064 1193 181 212 6 chr11 62879708 62880026 -58963830 + MTD LTR MaLR 1 373 -46 6 1064 261 0 0 0 chr11 62880026 62880055 -58963801 + (TGG)n Simple_repeat Simple_repeat 3 31 0 6 1064 1193 181 212 6 chr11 62880055 62880080 -58963776 + MTD LTR MaLR 374 414 -5 6 1064 341 225 12 12 chr11 62880155 62880236 -58963620 + ID4 SINE ID 3 83 0 6 1064 315 0 0 0 chr11 62880412 62880447 -58963409 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1064 600 277 54 31 chr11 62881046 62881372 -58962484 - ORR1E LTR MaLR -18 361 7 6 1064 304 301 103 57 chr11 62881600 62881882 -58961974 - L1MEc LINE L1 -5993 407 113 6 1064 976 131 6 6 chr11 62883295 62883471 -58960385 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 6 1064 1176 272 28 11 chr11 62884431 62884717 -58959139 + B4 SINE B4 2 292 0 6 1064 524 259 4 0 chr11 62884718 62884990 -58958866 + (CA)n Simple_repeat Simple_repeat 1 273 0 6 1064 228 280 204 17 chr11 62888120 62888360 -58955496 + L1M4 LINE L1 4993 5277 -869 6 1064 878 176 0 7 chr11 62888471 62888608 -58955248 - B1_Mur4 SINE Alu -12 138 3 6 1064 255 233 28 83 chr11 62888608 62888660 -58955196 - ORR1B1-int LTR MaLR -863 646 603 6 1064 21 36 0 0 chr11 62889444 62889472 -58954384 + AT_rich Low_complexity Low_complexity 1 28 0 6 1064 318 132 40 0 chr11 62889596 62889672 -58954184 + CT-rich Low_complexity Low_complexity 2 80 0 6 1064 866 211 173 31 chr11 62889920 62890174 -58953682 - B4 SINE B4 -2 290 1 6 1064 285 339 0 74 chr11 62890381 62890502 -58953354 - PB1D10 SINE Alu -5 112 1 6 1064 190 217 169 28 chr11 62891198 62891269 -58952587 + L4 LINE RTE 360 440 -1589 6 1064 383 304 0 0 chr11 62891775 62891887 -58951969 + (CA)n Simple_repeat Simple_repeat 1 112 0 6 1064 422 298 205 33 chr11 62893549 62894007 -58949849 + L2 LINE L2 2322 2858 -561 6 1064 236 211 17 17 chr11 62894534 62894592 -58949264 + (CAGGG)n Simple_repeat Simple_repeat 3 60 0 6 1064 615 128 0 0 chr11 62895386 62895480 -58948376 - URR1B DNA MER1_type 0 225 132 6 1064 312 315 0 21 chr11 62896865 62896940 -58946916 - L1MEg LINE L1 -4134 1950 1877 6 1064 1223 61 0 0 chr11 62896940 62897087 -58946769 - B1_Mus1 SINE Alu 0 148 2 6 1064 312 315 0 21 chr11 62897087 62897105 -58946751 - L1MEg LINE L1 -4208 1876 1859 6 1064 1072 196 10 25 chr11 62898165 62898369 -58945487 - B3 SINE B2 -13 203 3 6 1064 387 0 0 0 chr11 62898915 62898958 -58944898 + (TTG)n Simple_repeat Simple_repeat 2 44 0 6 1064 386 321 36 29 chr11 62899002 62899140 -58944716 - MLT1B LTR MaLR -72 318 180 6 1064 540 0 0 0 chr11 62899149 62899209 -58944647 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1064 785 212 138 137 chr11 62899215 62899594 -58944262 - MT2A LTR ERVL -71 530 3 6 1064 565 226 48 99 chr11 62899594 62899767 -58944089 - MLT1B LTR MaLR -276 191 6 6 1064 281 167 37 37 chr11 62900875 62900956 -58942900 + G-rich Low_complexity Low_complexity 3 83 0 6 1064 767 275 75 55 chr11 62901460 62901714 -58942142 + Tigger5 DNA MER2_type 2147 2405 -1 6 1064 875 295 10 70 chr11 62902011 62902310 -58941546 - B4A SINE B4 -10 282 2 6 1064 492 143 0 0 chr11 62902536 62902620 -58941236 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 1064 342 0 0 0 chr11 62902620 62902658 -58941198 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1064 429 322 62 76 chr11 62902674 62902950 -58940906 - B4A SINE B4 -2 290 19 6 1064 245 247 22 135 chr11 62904163 62904252 -58939604 - ID4 SINE ID 0 83 5 6 1064 299 228 85 21 chr11 62904255 62904349 -58939507 - PB1D10 SINE Alu -1 116 17 6 1064 202 290 108 0 chr11 62904964 62905057 -58938799 - L2 LINE L2 -818 2601 2499 6 1064 688 278 60 34 chr11 62905322 62905557 -58938299 - MER2 DNA MER2_type -19 326 86 7 1064 243 325 48 0 chr11 62905562 62905645 -58938211 - Lx9 LINE L1 -484 7160 7074 7 1064 287 294 9 47 chr11 62906069 62906176 -58937680 + MIR3 SINE MIR 81 183 -25 7 1064 207 0 0 0 chr11 62906323 62906346 -58937510 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 1064 605 302 154 13 chr11 62906422 62906721 -58937135 - MER2 DNA MER2_type -4 341 1 7 1064 205 290 14 0 chr11 62907842 62907911 -58935945 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1064 234 247 38 25 chr11 62908140 62908219 -58935637 + LTR81A LTR ERV1? 952 1031 -319 7 1064 378 0 0 0 chr11 62909334 62909376 -58934480 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1064 1204 75 67 22 chr11 62910566 62910744 -58933112 - B2_Mm2 SINE B2 -9 186 1 7 1064 294 169 78 0 chr11 62911110 62911187 -58932669 - Lx5 LINE L1 0 7050 6968 7 1064 427 304 84 78 chr11 62911594 62911890 -58931966 + RLTR11A2 LTR ERVK 226 523 -4 7 1064 571 219 0 0 chr11 62911896 62912010 -58931846 + Lx5 LINE L1 6785 6898 -152 7 1064 409 286 107 103 chr11 62912290 62912551 -58931305 + MLT1G1 LTR MaLR 108 369 -210 7 1064 1037 269 102 3 chr11 62913306 62913589 -58930267 - MER2 DNA MER2_type -23 322 12 7 1064 21 0 0 0 chr11 62913606 62913627 -58930229 + AT_rich Low_complexity Low_complexity 1 21 0 7 1064 268 312 0 0 chr11 62913702 62913779 -58930077 + MLT1I LTR MaLR 313 389 -22 7 1064 504 0 0 0 chr11 62913794 62913850 -58930006 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1064 477 71 0 0 chr11 62913850 62913919 -58929937 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1065 572 250 124 35 chr11 62914839 62914984 -58928872 + RSINE1 SINE B4 6 163 -2 7 1065 181 122 82 0 chr11 62915041 62915090 -58928766 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 7 1065 707 259 5 72 chr11 62915997 62916205 -58927651 - B3A SINE B2 -2 196 3 7 1065 1137 150 85 19 chr11 62916361 62916572 -58927284 + URR1B DNA MER1_type 1 225 0 7 1065 276 330 23 0 chr11 62917027 62917115 -58926741 + MER3 DNA MER1_type 3 92 -117 7 1065 1722 225 0 3 chr11 62917527 62917844 -58926012 - MTD LTR MaLR -89 330 15 7 1065 229 364 0 134 chr11 62919448 62919597 -58924259 - Charlie25 DNA MER1_type -556 1968 1840 7 1065 658 322 54 25 chr11 62919644 62919886 -58923970 + B4 SINE B4 2 250 -42 7 1065 306 0 0 0 chr11 62919899 62919933 -58923923 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1065 549 144 0 0 chr11 62919933 62920037 -58923819 + (GA)n Simple_repeat Simple_repeat 1 104 0 7 1065 225 231 0 0 chr11 62920256 62920308 -58923548 - Charlie25 DNA MER1_type -1068 1456 1405 7 1065 424 289 0 17 chr11 62920733 62920849 -58923007 + MLT1A1 LTR MaLR 295 408 0 7 1065 249 299 78 0 chr11 62921040 62921117 -58922739 - PB1D10 SINE Alu -26 91 9 7 1065 943 275 197 36 chr11 62921496 62921938 -58921918 + RMER15 LTR ERVL 46 558 -17 7 1065 1080 167 58 81 chr11 62922114 62922374 -58921482 + Lx7 LINE L1 7411 7664 -32 7 1065 535 325 137 56 chr11 62922374 62922804 -58921052 - Charlie25 DNA MER1_type -1711 813 349 7 1065 254 282 51 0 chr11 62922905 62922983 -58920873 + ORR1E LTR MaLR 1 82 -277 7 1065 1637 288 110 48 chr11 62924330 62925275 -58918581 + L1MB3 LINE L1 5168 6177 -6 7 1065 949 316 30 73 chr11 62925311 62925707 -58918149 - MTE2a LTR MaLR 0 379 1 7 1065 2129 265 50 6 chr11 62925719 62926257 -58917599 + Lx8 LINE L1 6527 7088 -385 7 1065 354 270 120 81 chr11 62927569 62927827 -58916029 + MLT2B3 LTR ERVL 241 508 -46 7 1065 402 273 239 84 chr11 62927953 62928275 -58915581 + MLT1B LTR MaLR 4 467 0 7 1065 211 296 0 0 chr11 62929577 62929631 -58914225 + CT-rich Low_complexity Low_complexity 3 56 0 7 1065 213 39 0 0 chr11 62929780 62929806 -58914050 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 7 1065 233 347 32 0 chr11 62929929 62930024 -58913832 + Tigger12c DNA MER2_type 24 121 -613 7 1065 2758 169 89 13 chr11 62930126 62930654 -58913202 - RMER15 LTR ERVL -5 570 3 7 1065 295 269 60 66 chr11 62931024 62931175 -58912681 + L1MEc LINE L1 46 195 -6205 7 1065 737 185 6 17 chr11 62931772 62931953 -58911903 + CT-rich Low_complexity Low_complexity 2 180 0 7 1065 284 231 141 97 chr11 62932440 62932646 -58911210 - MLT1H2 LTR MaLR 0 489 275 7 1065 879 254 56 80 chr11 62932649 62933058 -58910798 - RMER16 LTR ERVK 0 533 2 7 1065 193 219 24 0 chr11 62933224 62933265 -58910591 + L2a LINE L2 3377 3418 -8 7 1065 859 169 107 6 chr11 62933802 62933980 -58909876 + MTD LTR MaLR 222 417 -2 7 1065 233 348 62 49 chr11 62934174 62934398 -58909458 - LTR55 LTR ERV -12 536 310 7 1065 653 267 67 0 chr11 62934437 62934617 -58909239 - LTR55 LTR ERV -356 192 1 7 1065 867 254 99 33 chr11 62934737 62935038 -58908818 - RLTR18 LTR ERVK 0 616 182 7 1065 607 281 69 12 chr11 62935214 62935387 -58908469 - RLTR18 LTR ERVK -329 183 1 7 1065 908 101 0 7 chr11 62936028 62936167 -58907689 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 7 1065 414 178 111 44 chr11 62937042 62937177 -58906679 + B1F1 SINE Alu 5 148 -1 7 1065 381 232 0 47 chr11 62937212 62937298 -58906558 + ID4_ SINE ID 2 83 0 7 1065 352 186 29 35 chr11 62938641 62938814 -58905042 + (TG)n Simple_repeat Simple_repeat 2 173 0 7 1065 180 111 0 0 chr11 62938843 62938870 -58904986 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 7 1065 341 165 20 20 chr11 62938867 62938966 -58904890 + (TG)n Simple_repeat Simple_repeat 1 99 0 7 1065 400 87 43 11 chr11 62939006 62939099 -58904757 + (TG)n Simple_repeat Simple_repeat 1 96 0 7 1065 369 0 0 0 chr11 62939864 62939905 -58903951 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1065 801 66 0 0 chr11 62941702 62941808 -58902048 - B1_Mus2 SINE Alu -1 146 41 7 1065 207 100 0 0 chr11 62944345 62944375 -58899481 + (TCCG)n Simple_repeat Simple_repeat 3 32 0 7 1065 567 269 45 0 chr11 62947304 62947438 -58896418 + ID_B1 SINE B4 69 208 -16 7 1065 344 230 0 51 chr11 62950261 62950339 -58893517 - AluG_3 SINE Alu -90 221 148 7 1065 204 217 0 0 chr11 62951159 62951205 -58892651 + CT-rich Low_complexity Low_complexity 4 49 0 7 1065 1104 110 5 0 chr11 62952085 62952308 -58891548 + (TG)n Simple_repeat Simple_repeat 1 224 0 7 1065 2311 148 71 5 chr11 62953209 62953617 -58890239 - BGLII_B LTR ERVK 0 441 7 7 1065 204 40 0 0 chr11 62953617 62953642 -58890214 + (CAA)n Simple_repeat Simple_repeat 3 27 0 7 1065 270 0 0 0 chr11 62954265 62954295 -58889561 + (GGATG)n Simple_repeat Simple_repeat 2 31 0 7 1065 222 388 12 0 chr11 62954385 62954465 -58889391 + PB1 SINE Alu 43 123 -4 7 1065 259 304 62 69 chr11 62954783 62954928 -58888928 - L2b LINE L2 -35 3340 3197 7 1065 418 324 0 41 chr11 62957686 62957831 -58886025 + MER58A DNA MER1_type 1 139 -85 7 1065 405 367 100 7 chr11 62959495 62959764 -58884092 - L1M5 LINE L1 -2916 3230 2937 7 1065 322 234 270 16 chr11 62959972 62960098 -58883758 - RSINE1 SINE B4 -6 159 2 7 1065 610 242 255 0 chr11 62960756 62960917 -58882939 - ID_B1 SINE B4 -11 213 12 7 1065 252 0 0 0 chr11 62961387 62961415 -58882441 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7 1065 386 165 126 42 chr11 62963246 62963341 -58880515 - PB1D10 SINE Alu -6 111 9 7 1065 349 333 104 63 chr11 62964098 62964319 -58879537 - Tigger5 DNA MER2_type -2176 230 1 7 1065 590 138 0 8 chr11 62964863 62964987 -58878869 + (TC)n Simple_repeat Simple_repeat 2 124 0 7 1065 216 0 0 0 chr11 62964987 62965011 -58878845 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1065 239 217 63 48 chr11 62965180 62965243 -58878613 - U2 snRNA snRNA -120 68 5 7 1065 200 265 0 20 chr11 62965983 62966033 -58877823 + GA-rich Low_complexity Low_complexity 1 49 0 7 1065 22 0 0 0 chr11 62966194 62966216 -58877640 + AT_rich Low_complexity Low_complexity 1 22 0 7 1065 576 211 25 149 chr11 62966233 62966267 -58877589 - B2_Mm2 SINE B2 -19 176 150 7 1065 357 82 0 0 chr11 62966267 62966316 -58877540 + (TATG)n Simple_repeat Simple_repeat 3 51 0 7 1065 788 205 12 15 chr11 62966316 62966482 -58877374 - B3 SINE B2 -53 163 1 7 1065 432 0 0 0 chr11 62967774 62967822 -58876034 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1065 834 195 40 99 chr11 62968616 62968838 -58875018 - B3 SINE B2 -1 215 7 7 1065 328 263 170 10 chr11 62968847 62968947 -58874909 - B1F1 SINE Alu 0 117 2 7 1065 226 362 48 0 chr11 62968947 62968986 -58874870 - B4A SINE B4 -205 87 44 7 1065 216 394 75 41 chr11 62969110 62969428 -58874428 + L2c LINE L2 3021 3349 -38 7 1065 238 292 0 27 chr11 62970061 62970135 -58873721 + CT-rich Low_complexity Low_complexity 2 73 0 7 1065 421 279 22 36 chr11 62970135 62970277 -58873579 - PB1D10 SINE Alu -2 147 1 7 1065 351 60 0 0 chr11 62971327 62971377 -58872479 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1065 231 359 99 0 chr11 62974157 62974299 -58869557 - MER5A1 DNA MER1_type -9 157 2 7 1065 21 0 0 0 chr11 62974885 62974906 -58868950 + AT_rich Low_complexity Low_complexity 1 21 0 7 1065 330 182 129 54 chr11 62975739 62975832 -58868024 - MLT1A1 LTR MaLR 0 408 309 7 1065 417 409 76 12 chr11 62976310 62976718 -58867138 + L1M4b LINE L1 136 569 -6765 7 1065 410 341 150 18 chr11 62977198 62977744 -58866112 + L1M4b LINE L1 627 1244 -6090 7 1065 245 313 37 75 chr11 62978264 62978371 -58865485 - ORR1E LTR MaLR -167 192 90 7 1065 299 264 29 117 chr11 62978426 62978529 -58865327 - ORR1E LTR MaLR -265 94 1 7 1065 273 308 28 93 chr11 62978534 62978749 -58865107 + L1M4b LINE L1 1241 1441 -5893 7 1065 503 267 113 41 chr11 62978756 62979045 -58864811 - Tigger7 DNA MER2_type -1 2490 2166 7 1065 907 344 14 7 chr11 62979068 62979361 -58864495 - Tigger7 DNA MER2_type -2184 307 13 7 1065 222 315 0 0 chr11 62979413 62979521 -58864335 + (CA)n Simple_repeat Simple_repeat 1 108 0 7 1065 382 336 52 13 chr11 62979524 62979753 -58864103 + L1M4b LINE L1 1534 1771 -5133 7 1065 614 303 58 68 chr11 62979871 62979975 -58863881 + MTD LTR MaLR 10 117 -302 7 1065 1204 43 0 0 chr11 62979975 62980115 -58863741 - B1_Mus1 SINE Alu -8 140 1 7 1065 614 303 58 68 chr11 62980115 62980410 -58863446 + MTD LTR MaLR 118 405 -14 7 1065 347 267 108 10 chr11 62980600 62980702 -58863154 + PB1D7 SINE Alu 2 113 -7 7 1065 325 333 102 29 chr11 62980734 62981077 -58862779 + L1M4b LINE L1 5809 6176 -824 7 1065 594 167 0 0 chr11 62981092 62981188 -58862668 + PB1D7 SINE Alu 15 110 -10 8 1065 994 334 98 17 chr11 62981228 62981950 -58861906 + L1MB8 LINE L1 5335 6115 -63 8 1065 468 0 0 0 chr11 62981951 62982003 -58861853 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1065 907 184 5 101 chr11 62982149 62982367 -58861489 - B3A SINE B2 0 198 2 8 1065 322 243 115 10 chr11 62984105 62984209 -58859647 - MER34 LTR ERV1 -53 489 375 8 1065 2974 118 151 8 chr11 62984523 62985034 -58858822 - RMER4B LTR ERVK -1 584 1 8 1065 1286 197 11 86 chr11 62985170 62985448 -58858408 + MTC LTR MaLR 6 262 -159 8 1065 891 193 72 0 chr11 62985443 62985609 -58858247 - B3 SINE B2 -38 178 1 8 1065 372 257 39 71 chr11 62986050 62986205 -58857651 - RMER10B LTR ERVL -11 387 238 8 1065 839 254 15 5 chr11 62986558 62986764 -58857092 - B3 SINE B2 -7 209 2 8 1065 612 167 83 0 chr11 62988348 62988480 -58855376 + MERVL_2A-int LTR ERVL 5619 5761 0 8 1065 709 189 191 117 chr11 62988480 62988869 -58854987 + MT2A LTR ERVL 1 540 -61 8 1065 624 14 0 0 chr11 62988869 62988942 -58854914 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 1065 683 261 109 60 chr11 62988942 62988956 -58854900 + MT2A LTR ERVL 541 551 -50 8 1065 2395 250 126 14 chr11 62988956 62989609 -58854247 - Lx8 LINE L1 -146 7327 6602 8 1065 370 259 107 7 chr11 62990399 62990539 -58853317 - L1ME2 LINE L1 -319 5845 5692 8 1065 1107 111 116 43 chr11 62990598 62990805 -58853051 + URR1A DNA MER1_type 5 226 0 8 1065 851 292 113 47 chr11 62991079 62991632 -58852224 + RMER13A LTR ERVK 1 615 -12 8 1065 474 49 0 0 chr11 62991844 62991905 -58851951 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1065 4206 126 33 41 chr11 62991964 62992725 -58851131 - L1_Mur3 LINE L1 -1748 4132 3378 8 1065 276 220 66 0 chr11 62992725 62992816 -58851040 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 8 1065 350 116 0 28 chr11 62992816 62992887 -58850969 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 8 1065 916 93 50 0 chr11 62992887 62993026 -58850830 - L1_Mur3 LINE L1 -2509 3371 3226 8 1065 585 277 0 16 chr11 62993118 62993239 -58850617 - RSINE1 SINE B4 0 165 47 8 1065 185 234 93 58 chr11 62994321 62994407 -58849449 - L3 LINE CR1 -3687 802 714 8 1065 7067 211 128 89 chr11 62996442 62996676 -58847180 - L1_Rod LINE L1 -1165 4682 4431 8 1065 672 48 0 0 chr11 62996676 62996760 -58847096 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 8 1065 7067 211 128 89 chr11 62996760 62997580 -58846276 - L1_Rod LINE L1 -1417 4430 3644 8 1065 188 35 35 0 chr11 62997580 62997609 -58846247 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1065 7067 211 128 89 chr11 62997609 62998244 -58845612 - L1_Rod LINE L1 -2204 3643 2970 8 1065 2939 35 6 0 chr11 62998244 62998588 -58845268 - ORR1A1 LTR MaLR 0 346 1 8 1065 7067 211 128 89 chr11 62998588 63000000 -58843856 - L1_Rod LINE L1 -2878 2969 1456 8 1065 1531 178 34 14 chr11 63000004 63000249 -58843607 - L1_Rod LINE L1 -4397 1450 1189 1 1065 351 0 0 0 chr11 63000249 63000288 -58843568 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1065 1531 190 46 77 chr11 63000288 63000555 -58843301 - L1_Rod LINE L1 -6420 1188 952 1 1065 264 59 0 0 chr11 63000555 63000589 -58843267 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1065 1174 68 7 0 chr11 63000592 63000739 -58843117 - B1_Mus1 SINE Alu 0 148 1 4 1065 336 229 14 0 chr11 63000740 63000810 -58843046 - L1_Rod LINE L1 -6642 966 896 1 1065 411 309 52 24 chr11 63000837 63001049 -58842807 - L1_Rod LINE L1 -6895 713 496 1 1065 3007 173 26 16 chr11 63001336 63001883 -58841973 + Lx4B LINE L1 6496 7047 -11 5 1065 385 284 11 1 chr11 63001945 63002053 -58841803 - MLT1B LTR MaLR -12 378 254 6 1065 594 0 0 0 chr11 63002080 63002146 -58841710 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 1065 371 308 67 30 chr11 63002434 63002598 -58841258 - RLTR42-int LTR ERVK -4123 1399 1230 8 1065 1354 78 11 0 chr11 63003106 63003285 -58840571 - B2_Mm2 SINE B2 -14 181 1 9 1065 1349 165 4 22 chr11 63006248 63006477 -58837379 + URR1B DNA MER1_type 1 225 0 1 1065 288 0 0 0 chr11 63006493 63006525 -58837331 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1065 6699 116 58 2 chr11 63006663 63006792 -58837064 - Lx LINE L1 -4 6650 6521 1 1065 7811 84 10 2 chr11 63006792 63007807 -58836049 - RLTR13D5 LTR ERVK 0 1023 1 1 1065 6699 126 36 1 chr11 63007807 63009199 -58834657 - Lx LINE L1 -134 6520 5073 1 1065 449 306 87 22 chr11 63009995 63010179 -58833677 + B3A SINE B2 3 198 0 1 1065 29 60 0 0 chr11 63010191 63010241 -58833615 + AT_rich Low_complexity Low_complexity 1 50 0 1 1065 228 259 0 0 chr11 63010381 63010439 -58833417 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1065 30 27 0 0 chr11 63010686 63010723 -58833133 + AT_rich Low_complexity Low_complexity 1 37 0 1 1065 352 190 43 6 chr11 63010813 63010977 -58832879 + (TA)n Simple_repeat Simple_repeat 2 171 0 1 1065 347 224 8 60 chr11 63010995 63011128 -58832728 + Lx9 LINE L1 7389 7514 -130 1 1065 365 123 15 0 chr11 63011142 63011207 -58832649 + (CATA)n Simple_repeat Simple_repeat 1 66 0 2 1065 186 43 0 0 chr11 63011257 63011280 -58832576 + (CTAG)n Simple_repeat Simple_repeat 2 24 0 2 1065 2188 197 149 7 chr11 63011579 63012141 -58831715 - RLTR26 LTR ERVK 0 642 1 2 1065 208 300 14 0 chr11 63013527 63013597 -58830259 + GA-rich Low_complexity Low_complexity 1 71 0 2 1065 1551 216 17 82 chr11 63013714 63014118 -58829738 - RLTR1B LTR ERV1 0 512 135 2 1065 315 0 0 0 chr11 63015367 63015402 -58828454 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1065 222 205 0 0 chr11 63016546 63016585 -58827271 + GA-rich Low_complexity Low_complexity 4 42 0 2 1065 591 15 0 0 chr11 63016585 63016653 -58827203 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 2 1065 625 152 99 1 chr11 63016910 63017042 -58826814 - B1_Mur4 SINE Alu 0 149 2 2 1065 1206 81 44 88 chr11 63017989 63018193 -58825663 - B2_Mm2 SINE B2 0 195 1 2 1065 566 238 139 6 chr11 63018394 63018559 -58825297 - MTD LTR MaLR -12 407 221 3 1065 834 210 45 88 chr11 63018574 63018994 -58824862 - ORR1C1-int LTR MaLR -687 571 77 3 1065 1067 242 93 4 chr11 63019033 63019311 -58824545 - MTD LTR MaLR 0 419 117 3 1065 1012 188 192 5 chr11 63019312 63019611 -58824245 - ORR1C1 LTR MaLR 0 378 1 3 1065 398 213 109 18 chr11 63019611 63019721 -58824135 - ORR1C1 LTR MaLR -299 120 1 3 1065 2563 165 35 76 chr11 63019835 63020412 -58823444 - RLTR31_Mur LTR ERVK 0 553 1 3 1065 22 35 0 0 chr11 63021296 63021325 -58822531 + AT_rich Low_complexity Low_complexity 1 29 0 3 1065 753 144 32 0 chr11 63022090 63022188 -58821668 + RMER19B LTR ERVK 143 240 -662 3 1065 243 0 0 0 chr11 63022188 63022215 -58821641 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1065 753 144 32 0 chr11 63022215 63022241 -58821615 + RMER19B LTR ERVK 241 270 -632 3 1065 2168 134 40 8 chr11 63022260 63022636 -58821220 - MTC LTR MaLR -33 388 1 3 1065 233 0 62 0 chr11 63022663 63022695 -58821161 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1065 961 159 39 0 chr11 63024034 63024053 -58819803 + URR1A DNA MER1_type 38 61 -165 3 1065 417 20 0 0 chr11 63024053 63024103 -58819753 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1065 961 159 39 0 chr11 63024103 63024265 -58819591 + URR1A DNA MER1_type 62 225 -1 3 1065 513 335 128 20 chr11 63024330 63024729 -58819127 + Tigger7 DNA MER2_type 26 467 -2024 4 1065 360 0 0 0 chr11 63024768 63024808 -58819048 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1065 337 252 20 10 chr11 63025732 63025832 -58818024 - HAL1-2a_MD LINE L1 -494 2530 2430 4 1065 294 227 23 248 chr11 63026196 63026325 -58817531 + B1F SINE Alu 41 140 -9 4 1065 25 0 0 0 chr11 63027256 63027281 -58816575 + AT_rich Low_complexity Low_complexity 1 25 0 4 1065 774 161 21 0 chr11 63028046 63028189 -58815667 + URR1A DNA MER1_type 5 150 -76 3 1065 363 265 8 33 chr11 63028169 63028290 -58815566 - RMER19B LTR ERVK -632 270 153 4 1065 586 200 291 23 chr11 63028432 63028652 -58815204 - RMER19C LTR ERVK -332 279 1 4 1065 603 0 0 0 chr11 63029452 63029519 -58814337 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1065 189 195 0 0 chr11 63029830 63029871 -58813985 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1065 529 310 113 23 chr11 63030494 63030804 -58813052 - ORR1E LTR MaLR -10 349 12 5 1065 499 152 66 9 chr11 63031859 63031965 -58811891 - B2_Mm2 SINE B2 -83 112 1 5 1065 21 0 0 0 chr11 63032605 63032626 -58811230 + AT_rich Low_complexity Low_complexity 1 21 0 5 1065 207 0 0 0 chr11 63033172 63033195 -58810661 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1065 539 162 0 7 chr11 63034105 63034248 -58809608 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1065 459 331 107 35 chr11 63036002 63036377 -58807479 + L2 LINE L2 2335 2736 -683 5 1065 525 333 118 4 chr11 63037369 63037607 -58806249 + Lx9 LINE L1 7194 7458 -186 5 1065 234 0 0 0 chr11 63037610 63037636 -58806220 + (TGAG)n Simple_repeat Simple_repeat 4 29 0 5 1065 24 53 0 0 chr11 63037727 63037765 -58806091 + AT_rich Low_complexity Low_complexity 1 38 0 5 1065 23 33 0 0 chr11 63037890 63037920 -58805936 + AT_rich Low_complexity Low_complexity 1 30 0 5 1065 21 57 0 0 chr11 63037987 63038022 -58805834 + AT_rich Low_complexity Low_complexity 1 35 0 6 1065 580 279 94 123 chr11 63038182 63038544 -58805312 - RLTR18B LTR ERVK 0 616 124 6 1065 278 293 68 181 chr11 63038625 63038745 -58805111 - RLTR18B LTR ERVK -316 196 107 6 1065 285 29 0 0 chr11 63038745 63038779 -58805077 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1065 278 293 68 181 chr11 63038779 63038879 -58804977 - RLTR18B LTR ERVK -406 106 1 6 1065 347 319 43 35 chr11 63038979 63039295 -58804561 - MLT1L LTR MaLR -136 474 96 6 1065 743 243 96 0 chr11 63039374 63039551 -58804305 - B3 SINE B2 -22 194 1 6 1065 362 317 152 57 chr11 63042232 63042409 -58801447 + MER44D DNA MER2_type 71 264 -441 6 1065 309 284 0 47 chr11 63042366 63042451 -58801405 + MER44C DNA MER2_type 645 725 -8 6 1065 1426 194 98 6 chr11 63043259 63043585 -58800271 + ORR1D1 LTR MaLR 1 356 -18 6 1065 314 246 19 21 chr11 63044476 63044572 -58799284 - MER57C2 LTR ERV1 -183 228 118 6 133 1767 186 19 101 chr11 63045405 63045767 -58798089 - RMER20A LTR ERVK -45 471 148 7 1066 321 26 0 0 chr11 63045767 63045805 -58798051 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1066 1767 186 19 101 chr11 63045805 63045955 -58797901 - RMER20A LTR ERVK -369 147 1 7 1066 539 275 7 21 chr11 63045966 63046107 -58797749 - MERVK26-int LTR ERVK -8 6911 6773 7 1066 516 163 0 0 chr11 63046124 63046210 -58797646 - RMER20A LTR ERVK -430 86 1 7 1066 306 257 80 35 chr11 63046701 63046814 -58797042 - MER57C2 LTR ERV1 -293 118 1 6 1066 185 71 0 0 chr11 63047473 63047501 -58796355 - L2 LINE L2 -3141 278 251 7 1066 180 190 23 23 chr11 63047792 63047835 -58796021 + MIRb SINE MIR 111 153 -115 7 1066 418 255 56 9 chr11 63049465 63049572 -58794284 - B3 SINE B2 -104 112 1 7 1066 237 361 63 0 chr11 63049737 63049895 -58793961 + MER5B DNA MER1_type 5 172 -6 7 1066 347 255 132 0 chr11 63049921 63050027 -58793829 + PB1D7 SINE Alu 1 120 0 7 1066 548 233 89 5 chr11 63050265 63050455 -58793401 + L1MA7 LINE L1 6086 6291 0 7 1066 259 295 11 11 chr11 63050756 63050845 -58793011 + 5S rRNA rRNA 2 90 -31 7 1066 378 0 0 0 chr11 63051233 63051275 -58792581 + (CAG)n Simple_repeat Simple_repeat 1 42 0 8 1066 639 121 0 0 chr11 63051584 63051683 -58792173 + (CGTG)n Simple_repeat Simple_repeat 1 99 0 8 1066 217 208 52 10 chr11 63051710 63051807 -58792049 + (TATG)n Simple_repeat Simple_repeat 4 104 0 8 1066 1677 279 45 21 chr11 63051861 63052598 -58791258 - L1MD2 LINE L1 -147 6032 5287 8 1066 1620 73 2 7 chr11 63052600 63053137 -58790719 + (TTCC)n Simple_repeat Simple_repeat 1 533 0 8 1066 211 40 0 0 chr11 63053137 63053162 -58790694 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 8 1066 476 272 7 29 chr11 63053162 63053302 -58790554 - B1_Mur1 SINE Alu -6 143 7 8 1066 309 51 0 0 chr11 63053326 63053365 -58790491 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1066 1077 60 0 0 chr11 63053366 63053500 -58790356 - B1_Mus2 SINE Alu -12 135 2 8 1066 245 260 0 0 chr11 63053555 63053605 -58790251 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1066 233 312 31 0 chr11 63053612 63053676 -58790180 - ID4 SINE ID -10 73 8 9 1066 612 244 36 18 chr11 63053693 63053860 -58789996 - L1MD2 LINE L1 -900 5246 5077 8 1066 576 264 55 8 chr11 63054013 63054201 -58789655 - B3A SINE B2 -22 194 9 9 1066 257 197 0 15 chr11 63054535 63054602 -58789254 + CT-rich Low_complexity Low_complexity 2 67 0 9 1066 315 0 0 0 chr11 63056692 63056727 -58787129 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 9 1066 614 226 211 11 chr11 63056731 63056875 -58786981 + B3 SINE B2 2 177 -39 9 1066 414 0 0 0 chr11 63056875 63056921 -58786935 + (CATA)n Simple_repeat Simple_repeat 4 49 0 9 1066 614 226 211 11 chr11 63056921 63056951 -58786905 + B3 SINE B2 178 211 -5 9 1066 221 306 0 14 chr11 63056986 63057059 -58786797 + B4A SINE B4 15 86 -206 9 1066 234 0 0 0 chr11 63057497 63057523 -58786333 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1066 216 111 0 0 chr11 63057756 63057792 -58786064 + (CAGTG)n Simple_repeat Simple_repeat 5 40 0 9 1066 880 144 144 36 chr11 63058495 63058689 -58785167 + URR1A DNA MER1_type 1 215 -11 9 1066 380 233 66 16 chr11 63059461 63059583 -58784273 + L1MD3 LINE L1 7787 7914 -81 1 1066 350 244 7 66 chr11 63060435 63060447 -58783409 - ID_B1 SINE B4 -19 205 83 1 1066 451 244 0 34 chr11 63060447 63060566 -58783290 - B1F2 SINE Alu -33 116 2 1 1066 4122 202 34 34 chr11 63061526 63062415 -58781441 + RMER19B LTR ERVK 2 890 -12 1 1066 222 237 16 48 chr11 63062992 63063061 -58780795 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1 1066 315 0 0 0 chr11 63063061 63063096 -58780760 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1066 222 237 16 48 chr11 63063096 63063150 -58780706 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 1066 218 103 77 0 chr11 63063175 63063214 -58780642 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 1 1066 239 163 20 0 chr11 63063215 63063264 -58780592 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1066 423 68 0 0 chr11 63063300 63063359 -58780497 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1066 431 230 44 9 chr11 63064470 63064584 -58779272 + MLT1C LTR MaLR 2 119 -348 1 1066 721 152 35 17 chr11 63064661 63064835 -58779021 + CT-rich Low_complexity Low_complexity 2 178 0 1 1066 287 255 8 102 chr11 63064841 63064959 -58778897 - PB1D7 SINE Alu -9 111 5 1 1066 471 318 75 25 chr11 63065174 63065374 -58778482 + MLT1C LTR MaLR 253 462 -5 1 1066 562 236 178 36 chr11 63065423 63065704 -58778152 - MLT1B LTR MaLR -12 378 58 1 1066 285 298 12 0 chr11 63067468 63067552 -58776304 + Tigger5 DNA MER2_type 1 85 -2321 1 1066 360 311 22 22 chr11 63068052 63068190 -58775666 + Tigger5 DNA MER2_type 91 228 -2178 1 1066 621 40 0 0 chr11 63069188 63069264 -58774592 + (GGAA)n Simple_repeat Simple_repeat 3 78 0 1 1066 466 277 14 28 chr11 63069281 63069422 -58774434 + B1_Mur1 SINE Alu 1 139 -10 1 1066 636 26 0 0 chr11 63069761 63069839 -58774017 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1066 721 178 70 0 chr11 63070076 63070205 -58773651 + B1_Mus1 SINE Alu 2 139 -9 1 1066 943 291 99 48 chr11 63070219 63070844 -58773012 - Lx9 LINE L1 -7 7637 6981 1 1066 474 75 0 0 chr11 63071960 63072027 -58771829 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1066 1446 221 51 23 chr11 63072827 63073217 -58770639 + MTD LTR MaLR 8 408 -11 1 1066 317 345 25 35 chr11 63073970 63074168 -58769688 - MLT1K LTR MaLR -34 561 366 1 1066 189 320 0 0 chr11 63074590 63074640 -58769216 + L2c LINE L2 3315 3364 -23 1 1066 413 305 33 39 chr11 63074819 63075000 -58768856 - MER63A DNA AcHobo -2 208 29 1 1066 398 255 72 9 chr11 63075048 63075159 -58768697 - B1F2 SINE Alu -7 142 25 1 1066 1198 68 0 0 chr11 63075319 63075466 -58768390 + B1_Mus2 SINE Alu 1 147 0 1 1066 189 0 0 0 chr11 63075466 63075487 -58768369 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1066 518 267 0 0 chr11 63075596 63075716 -58768140 + MTE-int LTR MaLR 895 1014 -566 1 1066 839 308 67 32 chr11 63075735 63075996 -58767860 + MTE2b LTR MaLR 54 328 -51 1 1066 1211 189 221 7 chr11 63075996 63076304 -58767552 - ORR1D1 LTR MaLR 0 374 1 1 1066 839 308 67 32 chr11 63076304 63076357 -58767499 + MTE2b LTR MaLR 329 379 0 1 1066 2620 284 79 22 chr11 63076353 63077319 -58766537 + MTE2b-int LTR MaLR 1 1021 -559 1 1066 698 229 124 0 chr11 63077377 63077578 -58766278 + MTE2a LTR MaLR 57 282 -97 1 1066 390 74 0 0 chr11 63078886 63078940 -58764916 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 1 1066 274 325 31 16 chr11 63079065 63079193 -58764663 - ID_B1 SINE B4 0 224 95 1 1066 1146 62 0 7 chr11 63079765 63079911 -58763945 + B1_Mm SINE Alu 3 147 0 1 1066 306 151 0 0 chr11 63079911 63079984 -58763872 + A-rich Low_complexity Low_complexity 1 73 0 1 1066 624 307 30 32 chr11 63079984 63080330 -58763526 - L1M5 LINE L1 -1036 5110 4758 1 1066 22 0 0 0 chr11 63080604 63080626 -58763230 + AT_rich Low_complexity Low_complexity 1 22 0 1 1066 705 232 5 72 chr11 63080630 63080825 -58763031 - B3A SINE B2 -34 182 1 1 1066 591 125 0 0 chr11 63080923 63081027 -58762829 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1066 574 304 0 7 chr11 63081027 63081176 -58762680 - B4A SINE B4 -22 270 123 1 1066 909 203 14 28 chr11 63082871 63083084 -58760772 - B3 SINE B2 -6 210 1 1 1066 245 229 16 16 chr11 63083470 63083532 -58760324 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 1 1066 507 157 0 0 chr11 63083535 63083624 -58760232 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1066 442 194 27 27 chr11 63085149 63085260 -58758596 + RSINE1 SINE B4 4 114 -51 1 1066 481 15 30 0 chr11 63085271 63085337 -58758519 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1066 530 81 163 0 chr11 63085340 63085426 -58758430 + RLTR23 LTR ERV1 1 100 -330 1 1066 1739 160 73 99 chr11 63085515 63085603 -58758253 - RLTR41 LTR ERV1 -32 414 311 1 1066 1266 67 0 0 chr11 63085603 63085781 -58758075 + (GA)n Simple_repeat Simple_repeat 2 179 0 1 1066 1739 160 73 99 chr11 63085781 63086116 -58757740 - RLTR41 LTR ERV1 -136 310 2 1 1066 1670 145 35 61 chr11 63086125 63086470 -58757386 + RLTR23 LTR ERV1 95 430 0 1 1066 201 24 98 0 chr11 63086494 63086535 -58757321 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 1 1066 192 152 0 0 chr11 63086929 63086962 -58756894 + T-rich Low_complexity Low_complexity 1 33 0 1 1066 1095 141 89 180 chr11 63087029 63087201 -58756655 - RMER17C LTR ERVK 0 410 223 1 1066 510 17 0 0 chr11 63087201 63087260 -58756596 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1066 1095 141 89 180 chr11 63087260 63087311 -58756545 - RMER17C LTR ERVK -188 222 194 1 1066 1236 96 0 0 chr11 63087311 63087488 -58756368 + (GGA)n Simple_repeat Simple_repeat 2 178 0 1 1066 1095 141 89 180 chr11 63087488 63087714 -58756142 - RMER17C LTR ERVK -217 193 1 1 1066 201 279 118 39 chr11 63088145 63088272 -58755584 + MIR3 SINE MIR 5 141 -67 1 1066 1207 174 0 52 chr11 63088810 63088944 -58754912 - RLTR14 LTR ERV1 0 382 249 1 1066 288 0 0 0 chr11 63088944 63088976 -58754880 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1066 1207 174 0 52 chr11 63088976 63089089 -58754767 - RLTR14 LTR ERV1 -134 248 148 1 1066 1191 81 0 0 chr11 63089841 63089989 -58753867 - B1_Mus1 SINE Alu 0 148 1 1 1066 225 132 0 0 chr11 63090016 63090054 -58753802 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1 1066 543 211 139 8 chr11 63090067 63090196 -58753660 - RSINE1 SINE B4 -6 159 14 1 1066 234 250 0 0 chr11 63090519 63090567 -58753289 + GA-rich Low_complexity Low_complexity 3 50 0 1 1066 845 270 50 43 chr11 63091231 63091439 -58752417 + MLT2B2 LTR ERVL 1 213 -302 1 1066 875 268 62 115 chr11 63091439 63091839 -58752017 + MTE2a LTR MaLR 1 379 0 1 1066 845 270 50 43 chr11 63091839 63091912 -58751944 + MLT2B2 LTR ERVL 214 284 -231 1 1066 276 301 0 0 chr11 63091916 63091989 -58751867 + MLT2B2 LTR ERVL 442 514 -48 1 1066 182 233 0 11 chr11 63092357 63092444 -58751412 + (GGGTG)n Simple_repeat Simple_repeat 1 86 0 1 1066 458 244 0 57 chr11 63092834 63092932 -58750924 - PB1D10 SINE Alu -2 115 23 1 1066 2327 86 9 58 chr11 63092932 63093276 -58750580 - ORR1A2 LTR MaLR 0 327 1 1 1066 458 244 0 57 chr11 63093276 63093299 -58750557 - PB1D10 SINE Alu -95 22 1 1 1066 1614 162 44 3 chr11 63093845 63094143 -58749713 - MTC LTR MaLR -8 413 104 1 1066 616 113 28 9 chr11 63094150 63094257 -58749599 + B1_Mus1 SINE Alu 40 148 0 1 1066 518 82 0 0 chr11 63094292 63094365 -58749491 - MTC LTR MaLR -348 73 1 1 1066 1089 113 0 0 chr11 63094463 63094640 -58749216 + (GAGAA)n Simple_repeat Simple_repeat 4 180 0 1 1066 348 291 0 37 chr11 63095715 63095822 -58748034 - RSINE1 SINE B4 -61 104 2 1 1066 396 256 75 6 chr11 63095914 63096087 -58747769 + Charlie5 DNA MER1_type 2364 2548 -76 1 1066 5493 146 7 11 chr11 63097036 63097913 -58745943 - Lx LINE L1 0 6654 5791 1 1066 212 0 36 0 chr11 63097913 63097941 -58745915 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1066 4199 137 20 38 chr11 63097941 63098693 -58745163 - Lx LINE L1 -787 5797 5164 1 1066 377 152 0 0 chr11 63098692 63098751 -58745105 + L1_Mur2 LINE L1 5082 5140 -737 1 1066 752 105 7 0 chr11 63098903 63099046 -58744810 + (TCTCTG)n Simple_repeat Simple_repeat 6 149 0 1 1066 288 0 0 0 chr11 63099046 63099078 -58744778 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1066 742 241 70 36 chr11 63099609 63099910 -58743946 - RLTR15 LTR ERVK -16 343 33 1 1066 319 122 13 39 chr11 63100615 63100692 -58743164 + G-rich Low_complexity Low_complexity 3 77 0 1 1066 233 260 40 14 chr11 63100696 63100770 -58743086 + PB1D10 SINE Alu 40 115 -2 1 1066 238 207 121 0 chr11 63102041 63102099 -58741757 + MLT1A1 LTR MaLR 302 366 -42 1 1066 665 177 0 35 chr11 63102537 63102688 -58741168 + T-rich Low_complexity Low_complexity 20 165 0 1 1066 1188 81 0 0 chr11 63102688 63102836 -58741020 - B1_Mus1 SINE Alu 0 148 1 1 1066 665 177 0 35 chr11 63102836 63102854 -58741002 + T-rich Low_complexity Low_complexity 2 19 0 1 1066 1825 188 61 30 chr11 63102857 63103252 -58740604 + MTD LTR MaLR 13 419 0 1 1066 617 206 16 0 chr11 63105749 63105875 -58737981 - RSINE1 SINE B4 -36 129 2 1 1066 467 196 19 14 chr11 63106143 63106256 -58737600 - B1_Mur2 SINE Alu -5 144 1 1 1066 29 84 0 0 chr11 63106267 63106338 -58737518 + AT_rich Low_complexity Low_complexity 1 71 0 1 1066 34 0 0 0 chr11 63106373 63106407 -58737449 + AT_rich Low_complexity Low_complexity 1 34 0 1 1066 323 241 209 30 chr11 63107096 63107331 -58736525 - L1MC3 LINE L1 -1106 6679 6403 1 1066 378 0 0 0 chr11 63107862 63107904 -58735952 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1066 488 226 28 0 chr11 63108471 63108577 -58735279 + B3A SINE B2 44 152 -46 1 1066 294 29 0 0 chr11 63108579 63108614 -58735242 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1066 290 239 43 11 chr11 63108641 63108734 -58735122 + Lx4B LINE L1 6963 7058 0 1 1066 648 166 66 80 chr11 63108768 63108919 -58734937 + B1_Mur4 SINE Alu 1 149 -1 1 1066 22 0 0 0 chr11 63109013 63109035 -58734821 + AT_rich Low_complexity Low_complexity 1 22 0 1 1066 215 306 0 0 chr11 63109200 63109249 -58734607 + polypyrimidine Low_complexity Low_complexity 5 53 0 1 1066 399 21 0 0 chr11 63109274 63109322 -58734534 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1066 3481 243 53 22 chr11 63109350 63110290 -58733566 - Lx9 LINE L1 -216 7428 6460 1 1066 274 233 16 16 chr11 63110562 63110623 -58733233 - PB1D10 SINE Alu -46 71 11 1 1066 255 152 0 0 chr11 63111675 63111721 -58732135 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1066 606 14 0 0 chr11 63112154 63112225 -58731631 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1066 237 65 0 0 chr11 63112484 63112515 -58731341 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1066 405 0 0 0 chr11 63112603 63112648 -58731208 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1066 683 267 34 28 chr11 63112741 63112918 -58730938 + B4 SINE B4 111 288 -4 2 1066 250 24 23 45 chr11 63114144 63114188 -58729668 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1066 932 268 154 9 chr11 63114981 63115305 -58728551 - MTD LTR MaLR -31 388 18 2 1066 369 243 119 46 chr11 63116210 63116319 -58727537 + MTD LTR MaLR 94 209 -198 2 1066 797 275 147 30 chr11 63116416 63116750 -58727106 + MTE2b LTR MaLR 3 375 -4 2 1066 300 346 88 66 chr11 63117151 63117606 -58726250 + L1M5 LINE L1 2465 2929 -3217 2 1066 204 135 0 0 chr11 63117970 63118007 -58725849 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1066 520 295 19 25 chr11 63118013 63118173 -58725683 - B4 SINE B4 0 292 134 2 1066 313 276 38 38 chr11 63118243 63118375 -58725481 - B1F1 SINE Alu -17 132 1 2 1066 336 94 0 0 chr11 63118515 63118568 -58725288 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1066 534 31 0 0 chr11 63118571 63118635 -58725221 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 2 1066 21 0 0 0 chr11 63119021 63119042 -58724814 + AT_rich Low_complexity Low_complexity 1 21 0 2 1066 558 217 150 10 chr11 63119376 63119576 -58724280 - Lx9 LINE L1 -9 7635 7408 2 1066 935 218 31 5 chr11 63119733 63119927 -58723929 - B3 SINE B2 0 216 18 2 1066 180 125 0 0 chr11 63119946 63119978 -58723878 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2 1066 1165 68 7 0 chr11 63119979 63120126 -58723730 - B1_Mus1 SINE Alu 0 148 1 2 1066 1472 66 0 11 chr11 63120126 63120309 -58723547 - B2_Mm2 SINE B2 -13 182 1 2 1066 1224 115 86 5 chr11 63120313 63120523 -58723333 - RMER4B LTR ERVK -30 555 329 2 1066 345 100 0 0 chr11 63120556 63120606 -58723250 + (TCC)n Simple_repeat Simple_repeat 3 52 0 2 1066 1865 131 14 43 chr11 63120615 63120965 -58722891 - RMER4B LTR ERVK -245 340 1 2 1066 812 163 20 0 chr11 63121130 63121277 -58722579 + ORR1C2 LTR MaLR 235 384 0 2 1066 297 214 18 0 chr11 63121277 63121333 -58722523 + Lx8 LINE L1 7263 7319 -154 2 1066 24 0 0 0 chr11 63121353 63121377 -58722479 + AT_rich Low_complexity Low_complexity 1 24 0 2 1066 23 0 0 0 chr11 63121619 63121642 -58722214 + AT_rich Low_complexity Low_complexity 1 23 0 2 1066 205 182 18 18 chr11 63122255 63122311 -58721545 + CT-rich Low_complexity Low_complexity 2 57 0 2 1066 606 268 7 0 chr11 63123588 63123726 -58720130 + ID_B1 SINE B4 84 222 -2 2 1066 424 119 63 8 chr11 63123747 63123874 -58719982 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 2 1066 1123 244 142 16 chr11 63124633 63124999 -58718857 - MTD LTR MaLR -6 413 2 2 1066 911 78 0 0 chr11 63125482 63125598 -58718258 + Lx LINE L1 5882 5997 -657 2 1066 4837 93 12 1 chr11 63126888 63127545 -58716311 + Lx LINE L1 5985 6648 -6 2 1066 879 103 0 0 chr11 63128663 63128809 -58715047 + (GA)n Simple_repeat Simple_repeat 2 147 0 2 1066 519 283 16 52 chr11 63129322 63129516 -58714340 - MTEb LTR MaLR -188 191 5 2 1066 223 265 14 14 chr11 63129757 63129826 -58714030 + GA-rich Low_complexity Low_complexity 3 71 0 2 1066 4146 151 76 72 chr11 63129835 63130727 -58713129 - RMER19B LTR ERVK -6 896 1 2 1066 24 32 0 0 chr11 63131425 63131456 -58712400 + AT_rich Low_complexity Low_complexity 1 31 0 2 1066 376 277 10 0 chr11 63132151 63132252 -58711604 - MTD LTR MaLR -1 378 277 2 1066 8972 104 54 0 chr11 63132255 63133749 -58710107 - L1_Mus2 LINE L1 -501 6137 4564 2 1066 622 295 21 10 chr11 63133754 63133946 -58709910 - MTD LTR MaLR -218 201 8 2 1066 561 225 67 24 chr11 63133951 63134115 -58709741 - MER33 DNA MER1_type -148 176 6 2 1066 1415 239 106 18 chr11 63135763 63136253 -58707603 + L1MA6 LINE L1 5628 6160 -140 2 1066 283 290 0 57 chr11 63136333 63136439 -58707417 + L1MA6 LINE L1 6180 6279 -21 2 1066 414 0 0 0 chr11 63136592 63136638 -58707218 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1066 315 0 0 0 chr11 63136638 63136672 -58707184 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1066 590 250 8 8 chr11 63136679 63136808 -58707048 - RSINE1 SINE B4 -22 143 15 2 1066 499 302 57 98 chr11 63137407 63137774 -58706082 - ORR1E LTR MaLR -2 357 6 2 1066 298 215 9 5 chr11 63138337 63138452 -58705404 + B3A SINE B2 1 121 -74 2 1066 207 186 0 0 chr11 63138606 63138649 -58705207 + A-rich Low_complexity Low_complexity 1 43 0 2 1066 883 160 11 0 chr11 63140137 63140312 -58703544 + GA-rich Low_complexity Low_complexity 2 178 0 2 1066 264 30 0 0 chr11 63142482 63142515 -58701341 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1066 1203 48 0 13 chr11 63142515 63142664 -58701192 - B1_Mm SINE Alu 0 147 1 2 1066 409 294 20 40 chr11 63143543 63143692 -58700164 + MER5A DNA MER1_type 44 189 0 2 1066 293 312 86 86 chr11 63144982 63145168 -58698688 + MLT2B1 LTR ERVL 109 294 -226 2 1066 297 0 0 0 chr11 63145283 63145316 -58698540 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1066 468 35 0 0 chr11 63145317 63145375 -58698481 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1066 413 247 231 13 chr11 63145494 63145650 -58698206 - Tigger5 DNA MER2_type -2206 200 11 2 1066 266 257 126 19 chr11 63145743 63145846 -58698010 - MLT2B1 LTR ERVL -335 185 72 2 1066 22 35 0 0 chr11 63147119 63147148 -58696708 + AT_rich Low_complexity Low_complexity 1 29 0 2 1066 390 200 0 0 chr11 63147364 63147459 -58696397 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1066 420 20 0 0 chr11 63147459 63147508 -58696348 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1066 3513 25 2 0 chr11 63147567 63147962 -58695894 - MTA_Mm LTR MaLR 0 396 1 2 1066 9877 11 2 0 chr11 63147962 63149058 -58694798 - MTA_Mm-int LTR MaLR 0 1098 1 2 1066 3538 20 2 0 chr11 63149058 63149453 -58694403 - MTA_Mm LTR MaLR 0 396 1 2 1066 226 324 137 0 chr11 63150325 63150427 -58693429 - MLT1K LTR MaLR -396 199 84 2 1066 231 314 151 14 chr11 63152236 63152375 -58691481 + L2a LINE L2 3018 3175 -251 2 1066 1013 212 18 54 chr11 63152698 63152922 -58690934 - B3 SINE B2 0 216 1 2 1066 437 293 73 7 chr11 63152923 63153074 -58690782 + ORR1E LTR MaLR 34 194 -165 2 1066 486 49 0 0 chr11 63153920 63153981 -58689875 + (TTG)n Simple_repeat Simple_repeat 2 62 0 2 1066 453 299 96 19 chr11 63154015 63154172 -58689684 - B3A SINE B2 -29 169 1 2 1066 324 133 0 0 chr11 63154795 63154855 -58689001 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1066 372 283 68 53 chr11 63155630 63155820 -58688036 + ORR1E LTR MaLR 3 195 -164 2 1066 1044 289 71 98 chr11 63156185 63157293 -58686563 - L1MB8 LINE L1 -46 6132 5056 2 1066 3359 48 2 0 chr11 63157293 63157688 -58686168 - MTA_Mm LTR MaLR 0 396 1 2 1066 638 248 46 152 chr11 63157688 63157777 -58686079 - L1MB8 LINE L1 -1091 5055 4974 2 1066 341 324 85 32 chr11 63157798 63157986 -58685870 - B3A SINE B2 0 198 1 2 1066 3153 63 5 2 chr11 63158440 63158835 -58685021 + MTA_Mm LTR MaLR 1 396 0 2 1066 417 287 140 12 chr11 63159005 63159255 -58684601 + MT2A LTR ERVL 250 531 -2 2 1066 1229 227 100 12 chr11 63159261 63159591 -58684265 + ORR1E LTR MaLR 1 359 0 2 1066 3840 291 78 20 chr11 63159606 63160929 -58682927 + ORR1E-int LTR MaLR 25 1423 -157 2 1066 826 290 58 27 chr11 63160974 63161322 -58682534 + ORR1E LTR MaLR 1 379 0 2 1066 244 340 32 77 chr11 63162025 63162181 -58681675 - MLT1H1 LTR MaLR -370 185 37 2 1066 186 43 0 0 chr11 63162849 63162872 -58680984 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2 1066 319 219 27 0 chr11 63164039 63164112 -58679744 - ID4_ SINE ID -4 79 5 2 1066 766 275 6 0 chr11 63164466 63164648 -58679208 + B4 SINE B4 20 202 -90 2 1066 594 68 0 0 chr11 63164673 63164761 -58679095 + (TC)n Simple_repeat Simple_repeat 1 88 0 2 1066 312 127 45 45 chr11 63164987 63165053 -58678803 + RMER15 LTR ERVL 45 110 -465 2 1066 641 286 138 7 chr11 63165081 63165363 -58678493 + RMER15 LTR ERVL 248 566 -9 2 1066 276 77 0 0 chr11 63165374 63165413 -58678443 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1066 311 271 92 14 chr11 63167193 63167335 -58676521 - L1ME1 LINE L1 -140 6039 5887 2 1066 360 0 0 0 chr11 63168579 63168619 -58675237 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1066 383 240 138 39 chr11 63168620 63168750 -58675106 - RSINE1 SINE B4 -18 147 5 2 1066 433 202 52 52 chr11 63168880 63168981 -58674875 + PB1D7 SINE Alu 3 105 -12 2 1066 192 40 0 0 chr11 63168981 63169006 -58674850 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 2 1066 399 202 52 52 chr11 63169006 63169019 -58674837 + PB1D10 SINE Alu 106 117 0 2 1066 481 298 109 47 chr11 63169603 63169941 -58673915 + ORR1E LTR MaLR 1 359 0 2 1066 216 0 0 0 chr11 63169981 63170005 -58673851 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1066 1162 55 14 0 chr11 63170005 63170150 -58673706 - B1_Mus2 SINE Alu 0 147 1 2 1066 194 203 45 30 chr11 63170650 63170716 -58673140 + L2b LINE L2 3306 3372 -3 2 1066 324 0 0 0 chr11 63170857 63170893 -58672963 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1066 255 326 115 26 chr11 63171686 63171878 -58671978 + L2a LINE L2 3182 3390 -36 2 1066 513 47 0 0 chr11 63171899 63171963 -58671893 + (TGAA)n Simple_repeat Simple_repeat 3 66 0 2 1066 1140 177 45 0 chr11 63173002 63173200 -58670656 + B3 SINE B2 3 209 -7 2 1066 1287 113 21 0 chr11 63173744 63173930 -58669926 + B2_Mm2 SINE B2 1 190 -5 2 1066 294 95 0 0 chr11 63173930 63173972 -58669884 + (GGA)n Simple_repeat Simple_repeat 1 42 0 2 1066 24 0 0 0 chr11 63174482 63174506 -58669350 + AT_rich Low_complexity Low_complexity 1 24 0 2 1066 1148 68 7 0 chr11 63174771 63174917 -58668939 + B1_Mm SINE Alu 1 147 0 2 1066 276 102 0 0 chr11 63174917 63174966 -58668890 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1066 262 336 46 15 chr11 63175221 63175351 -58668505 + RMER15 LTR ERVL 423 556 -19 2 1066 432 0 0 0 chr11 63175775 63175823 -58668033 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1066 324 64 0 0 chr11 63176389 63176436 -58667420 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 3 133 844 171 109 28 chr11 63176516 63176727 -58667129 - ORR1D1 LTR MaLR 0 374 147 3 1067 183 80 0 0 chr11 63176991 63177016 -58666840 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 3 1067 445 358 112 10 chr11 63177064 63177465 -58666391 + L2 LINE L2 2038 2479 -940 3 1067 183 316 0 13 chr11 63177458 63177535 -58666321 - L3 LINE CR1 -2115 2374 2299 3 1067 220 281 0 17 chr11 63177577 63177635 -58666221 + CT-rich Low_complexity Low_complexity 1 57 0 3 1067 351 0 0 0 chr11 63178178 63178217 -58665639 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1067 289 0 0 47 chr11 63178864 63178907 -58664949 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1067 294 184 0 0 chr11 63180396 63180445 -58663411 - PB1 SINE Alu -65 62 14 3 1067 26 30 0 0 chr11 63181647 63181680 -58662176 + AT_rich Low_complexity Low_complexity 1 33 0 3 1067 344 264 11 11 chr11 63182180 63182268 -58661588 - PB1D10 SINE Alu -26 91 4 3 1067 4760 129 23 5 chr11 63182502 63183245 -58660611 + RMER6A LTR ERVK 1 756 0 3 1067 245 263 48 39 chr11 63183574 63183677 -58660179 - MLT1A1 LTR MaLR 0 408 305 3 1067 433 229 213 0 chr11 63184252 63184374 -58659482 + B3A SINE B2 6 153 -45 3 1067 2714 205 35 14 chr11 63184374 63185021 -58658835 - L1_Rod LINE L1 -3148 2699 2039 3 1067 3537 257 32 67 chr11 63185046 63186157 -58657699 + Lx9 LINE L1 6368 7440 -204 3 1067 279 79 0 0 chr11 63186171 63186209 -58657647 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1067 525 104 0 0 chr11 63186479 63186556 -58657300 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 3 1067 689 155 0 34 chr11 63186559 63186706 -58657150 - Lx4A LINE L1 -10 7048 6907 3 1067 764 215 74 17 chr11 63187378 63187667 -58656189 - MTD LTR MaLR -13 406 1 3 1067 446 190 9 0 chr11 63187737 63187853 -58656003 + (TG)n Simple_repeat Simple_repeat 2 118 0 3 1067 779 179 0 6 chr11 63187910 63188090 -58655766 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1067 1058 30 15 0 chr11 63188240 63188373 -58655483 + (TTTTC)n Simple_repeat Simple_repeat 2 136 0 3 1067 1338 101 6 0 chr11 63188373 63188552 -58655304 - B2_Mm2 SINE B2 -15 180 1 3 1067 631 144 0 91 chr11 63189493 63189691 -58654165 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1067 441 0 0 0 chr11 63189692 63189741 -58654115 + (TAG)n Simple_repeat Simple_repeat 3 51 0 3 1067 525 314 19 13 chr11 63191546 63191563 -58652293 - B3A SINE B2 -4 194 177 3 1067 450 0 0 0 chr11 63191563 63191613 -58652243 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1067 525 314 19 13 chr11 63191613 63191753 -58652103 - B3A SINE B2 -22 176 36 3 1067 315 338 26 0 chr11 63192943 63193094 -58650762 - MER5A DNA MER1_type -12 177 23 3 1067 495 0 0 0 chr11 63194208 63194263 -58649593 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1067 402 100 0 0 chr11 63194263 63194323 -58649533 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1067 280 248 38 2 chr11 63194773 63194856 -58649000 + MLT1A1 LTR MaLR 2 90 -275 3 1067 369 0 0 0 chr11 63194885 63194926 -58648930 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1067 967 141 0 14 chr11 63194926 63195062 -58648794 - B1_Mur4 SINE Alu -13 137 2 3 1067 258 175 53 0 chr11 63195064 63195121 -58648735 + MLT1A1 LTR MaLR 341 400 -8 3 1067 262 253 47 24 chr11 63196313 63196398 -58647458 - ID4_ SINE ID -57 95 9 3 1067 290 307 112 17 chr11 63196409 63196525 -58647331 - PB1 SINE Alu 0 127 1 3 1067 603 124 61 12 chr11 63197506 63197669 -58646187 + (TCTCTG)n Simple_repeat Simple_repeat 4 174 0 3 1067 228 320 26 0 chr11 63197852 63197930 -58645926 + MER74A LTR ERVL 16 95 -463 3 1067 385 297 23 38 chr11 63198044 63198177 -58645679 - RSINE1 SINE B4 -30 135 5 3 1067 599 287 63 28 chr11 63198180 63198434 -58645422 + MER74A LTR ERVL 172 434 -124 3 1067 469 234 53 33 chr11 63198444 63198594 -58645262 + MER74A LTR ERVL 368 520 -38 3 1067 367 283 26 9 chr11 63199115 63199229 -58644627 - PB1D10 SINE Alu -1 116 1 3 1067 281 270 0 0 chr11 63199287 63199350 -58644506 + MER2 DNA MER2_type 2 64 -281 3 1067 703 287 33 43 chr11 63199393 63199604 -58644252 - B3A SINE B2 0 216 8 3 1067 485 299 46 0 chr11 63199620 63199794 -58644062 + MER2 DNA MER2_type 117 298 -47 3 1067 1717 182 116 3 chr11 63200055 63200391 -58643465 + ORR1D1 LTR MaLR 1 374 0 3 1067 372 212 54 17 chr11 63201118 63201239 -58642617 - MLT1A1 LTR MaLR -1 407 240 3 1067 190 356 89 48 chr11 63202073 63202241 -58641615 - MIR3 SINE MIR -23 185 11 3 1067 378 339 45 98 chr11 63202627 63202872 -58640984 + MER44D DNA MER2_type 1 232 -473 3 1067 246 204 141 22 chr11 63202895 63203030 -58640826 + MER44D DNA MER2_type 476 626 -79 3 1067 263 294 7 106 chr11 63203065 63203206 -58640650 + MER44D DNA MER2_type 578 704 -1 3 1067 547 232 254 0 chr11 63203232 63203409 -58640447 + ID_B1 SINE B4 2 223 -1 3 1067 1196 194 14 101 chr11 63204020 63204306 -58639550 + ORR1B1 LTR MaLR 1 261 -133 3 1067 459 78 0 0 chr11 63205532 63205596 -58638260 + (TTG)n Simple_repeat Simple_repeat 3 66 0 3 1067 848 264 31 55 chr11 63206289 63206545 -58637311 - ORR1D2 LTR MaLR -4 366 117 3 1067 424 286 53 20 chr11 63207126 63207276 -58636580 + B4A SINE B4 2 156 -136 3 1067 495 0 0 0 chr11 63207386 63207441 -58636415 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1067 28 48 0 0 chr11 63208180 63208222 -58635634 + AT_rich Low_complexity Low_complexity 1 42 0 3 1067 572 321 117 22 chr11 63209966 63210450 -58633406 + HERV16-int LTR ERVL 2461 2968 -2699 3 1067 279 0 0 0 chr11 63210605 63210636 -58633220 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1067 525 185 0 0 chr11 63210727 63210846 -58633010 + (CA)n Simple_repeat Simple_repeat 2 120 0 3 1067 666 319 54 30 chr11 63212564 63212635 -58631221 + MER2 DNA MER2_type 2 81 -264 3 1067 252 0 0 0 chr11 63212635 63212663 -58631193 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1067 666 319 54 30 chr11 63212663 63212927 -58630929 + MER2 DNA MER2_type 82 344 -1 3 1067 373 273 42 42 chr11 63213075 63213266 -58630590 + B3A SINE B2 1 191 -7 3 1067 576 206 0 0 chr11 63213267 63213398 -58630458 + (CA)n Simple_repeat Simple_repeat 2 132 0 3 1067 336 361 34 7 chr11 63213442 63213590 -58630266 + B4A SINE B4 136 287 -5 3 1067 1079 207 35 0 chr11 63213921 63214119 -58629737 + B3 SINE B2 2 206 -10 3 1067 942 228 86 15 chr11 63214282 63214549 -58629307 + B4A SINE B4 5 290 -2 3 1067 645 259 9 74 chr11 63216517 63216734 -58627122 - ID_B1 SINE B4 -17 207 5 3 1067 422 268 61 18 chr11 63216772 63216886 -58626970 - PB1D7 SINE Alu -1 119 1 3 1067 188 243 93 13 chr11 63217513 63217588 -58626268 + L2c LINE L2 3251 3331 -56 3 1067 982 123 0 14 chr11 63219071 63219219 -58624637 - B1_Mus2 SINE Alu -1 146 1 3 1067 244 284 96 19 chr11 63219515 63219619 -58624237 - PB1D10 SINE Alu -5 112 1 3 1067 1203 107 0 0 chr11 63220241 63220419 -58623437 + (TTC)n Simple_repeat Simple_repeat 1 178 0 3 1067 536 154 0 9 chr11 63220419 63220524 -58623332 + CT-rich Low_complexity Low_complexity 3 106 0 3 1067 433 276 41 0 chr11 63221358 63221481 -58622375 + ID_B1 SINE B4 91 218 -6 3 1067 261 0 0 0 chr11 63222179 63222208 -58621648 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1067 219 320 0 0 chr11 63223069 63223147 -58620709 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1067 1096 144 31 21 chr11 63224468 63224659 -58619197 - B2_Mm2 SINE B2 -1 194 2 3 1067 351 0 0 0 chr11 63225458 63225497 -58618359 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1067 194 0 39 0 chr11 63225538 63225564 -58618292 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 3 1067 183 80 0 0 chr11 63226637 63226662 -58617194 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1067 451 291 44 0 chr11 63227055 63227213 -58616643 - L1MB5 LINE L1 -16 6158 5994 3 1067 301 316 57 13 chr11 63227942 63228099 -58615757 - L1MB5 LINE L1 -435 5739 5576 3 1067 646 231 6 59 chr11 63228283 63228453 -58615403 + B3A SINE B2 1 161 -37 3 1067 183 224 50 33 chr11 63228849 63228909 -58614947 - L2a LINE L2 -8 3418 3358 3 1067 325 313 58 39 chr11 63229054 63229183 -58614673 + MER57E1 LTR ERV1 19 151 -221 3 1067 3293 50 2 8 chr11 63229183 63229585 -58614271 - MTB LTR MaLR 0 400 1 3 1067 325 313 58 39 chr11 63229585 63229611 -58614245 + MER57E1 LTR ERV1 152 177 -195 3 1067 252 215 49 37 chr11 63229874 63229956 -58613900 - L1M6 LINE L1 -4841 1655 1573 3 1067 635 278 106 45 chr11 63231726 63231990 -58611866 + RMER20B LTR ERVK 132 411 -216 3 1067 235 341 0 52 chr11 63232004 63232100 -58611756 + RMER20B LTR ERVK 492 582 -45 3 1067 373 94 0 109 chr11 63232379 63232581 -58611275 + CT-rich Low_complexity Low_complexity 1 180 0 3 1067 589 75 0 89 chr11 63232599 63232790 -58611066 + CT-rich Low_complexity Low_complexity 1 174 0 3 1067 474 113 0 83 chr11 63232838 63233031 -58610825 + CT-rich Low_complexity Low_complexity 1 177 0 3 1067 489 84 0 101 chr11 63233060 63233258 -58610598 + CT-rich Low_complexity Low_complexity 2 179 0 3 1067 673 56 0 87 chr11 63233279 63233475 -58610381 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 1067 294 164 0 76 chr11 63233477 63233649 -58610207 + CT-rich Low_complexity Low_complexity 1 159 0 3 1067 998 17 8 0 chr11 63236192 63236312 -58607544 + (TTC)n Simple_repeat Simple_repeat 3 123 0 3 1067 252 0 0 0 chr11 63236636 63236664 -58607192 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1067 270 189 189 0 chr11 63236691 63236765 -58607091 + Lx9 LINE L1 5852 5939 -1705 3 1067 1536 236 43 43 chr11 63236785 63237268 -58606588 + RLTR20B1 LTR ERVK 81 563 0 3 1067 721 139 84 0 chr11 63237409 63237543 -58606313 - B2_Mm2 SINE B2 -42 156 1 3 1067 29 28 0 0 chr11 63237756 63237792 -58606064 + AT_rich Low_complexity Low_complexity 1 36 0 3 1067 291 121 0 0 chr11 63238111 63238169 -58605687 + (T)n Simple_repeat Simple_repeat 1 58 0 3 1067 1148 92 0 11 chr11 63238404 63238579 -58605277 + B2_Mm2 SINE B2 2 174 -21 3 1067 429 20 0 0 chr11 63238579 63238629 -58605227 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1067 22 0 0 0 chr11 63238630 63238652 -58605204 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 513 278 39 44 chr11 63240274 63240455 -58603401 + B3A SINE B2 16 195 -3 3 1067 21 36 0 0 chr11 63240888 63240916 -58602940 + AT_rich Low_complexity Low_complexity 1 28 0 3 1067 398 278 17 9 chr11 63241284 63241400 -58602456 + RSINE1 SINE B4 3 119 -46 3 1067 295 276 144 17 chr11 63241514 63241632 -58602224 - RMER13A LTR ERVK -32 595 463 4 1067 349 276 63 113 chr11 63241655 63242072 -58601784 - RMER13A LTR ERVK -132 495 30 4 1067 441 0 0 0 chr11 63242112 63242161 -58601695 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1067 468 0 0 0 chr11 63242516 63242568 -58601288 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1067 941 262 0 0 chr11 63244581 63244783 -58599073 - B3 SINE B2 -5 211 10 4 1067 266 226 110 24 chr11 63244915 63245042 -58598814 - L1MEf LINE L1 -3049 3097 2960 4 1067 519 271 103 27 chr11 63245143 63245772 -58598084 - L1MEf LINE L1 -3329 2817 2073 4 1067 1310 280 49 33 chr11 63245773 63246198 -58597658 - Lx7 LINE L1 -912 6784 6353 4 1067 315 315 27 0 chr11 63246221 63246332 -58597524 - ID_B1 SINE B4 -8 216 103 4 1067 255 341 104 5 chr11 63246344 63246565 -58597291 - L1MEf LINE L1 -4277 1965 1723 4 1067 308 323 52 73 chr11 63247306 63247326 -58596530 + L1M5 LINE L1 2252 2271 -3875 4 1067 1299 27 0 0 chr11 63247326 63247473 -58596383 + B1_Mus2 SINE Alu 1 147 0 4 1067 308 323 52 73 chr11 63247473 63247820 -58596036 + L1M5 LINE L1 2272 2611 -3535 4 1067 1123 175 10 10 chr11 63247842 63248050 -58595806 - URR1B DNA MER1_type -4 221 14 4 1067 441 0 0 0 chr11 63248063 63248112 -58595744 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1067 1170 35 42 0 chr11 63248357 63248499 -58595357 + B1_Mus1 SINE Alu 1 148 0 4 1067 273 119 0 0 chr11 63248502 63248544 -58595312 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1067 830 203 7 0 chr11 63248936 63249084 -58594772 + B1_Mur3 SINE Alu 1 149 0 4 1067 257 189 51 82 chr11 63249179 63249277 -58594579 - L1MB3 LINE L1 -1 6182 6088 4 1067 975 296 88 64 chr11 63249444 63250597 -58593259 - L1MB4 LINE L1 -303 5877 4702 4 1067 1130 319 84 82 chr11 63250967 63251985 -58591871 + L1M4 LINE L1 1 1020 -5522 4 1067 436 291 122 5 chr11 63252083 63252280 -58591576 + MER2 DNA MER2_type 35 254 -91 4 1067 5310 196 47 2 chr11 63253341 63254356 -58589500 + Lx9 LINE L1 6417 7477 -167 4 1067 276 77 0 0 chr11 63254356 63254395 -58589461 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1067 193 204 37 22 chr11 63254502 63254637 -58589219 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 1067 191 212 37 12 chr11 63254840 63254921 -58588935 + GA-rich Low_complexity Low_complexity 2 84 0 4 1067 204 40 0 0 chr11 63255903 63255928 -58587928 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1067 263 289 190 17 chr11 63256508 63256624 -58587232 + MLT1J-int LTR MaLR 1133 1268 -119 4 1067 246 330 36 0 chr11 63258542 63258654 -58585202 + L1M5 LINE L1 5539 5654 -470 4 1067 203 194 147 15 chr11 63258875 63258943 -58584913 + L4 LINE RTE 623 699 -1330 4 1067 546 341 107 7 chr11 63259429 63259739 -58584117 - MER2 DNA MER2_type -3 342 2 4 1067 1670 209 51 42 chr11 63259840 63259962 -58583894 - MTD LTR MaLR 0 419 305 4 1067 1437 260 85 32 chr11 63259962 63260466 -58583390 - MT2A LTR ERVL -2 531 1 4 1067 1670 209 51 42 chr11 63260466 63260752 -58583104 - MTD LTR MaLR -115 304 7 4 1067 24 32 0 0 chr11 63261465 63261496 -58582360 + AT_rich Low_complexity Low_complexity 1 31 0 4 1067 300 111 0 0 chr11 63261875 63261920 -58581936 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 4 1067 4617 204 73 16 chr11 63261920 63262866 -58580990 - Lx5 LINE L1 -16 7034 6035 4 1067 2409 202 26 41 chr11 63262942 63263483 -58580373 - MT2A LTR ERVL 0 533 1 4 1067 1340 194 132 12 chr11 63264002 63264335 -58579521 - ORR1D1 LTR MaLR 0 374 2 4 1067 503 315 69 38 chr11 63264603 63264701 -58579155 - MLT1F LTR MaLR -16 532 426 4 1067 3266 41 5 5 chr11 63264701 63265097 -58578759 + MTA_Mm LTR MaLR 1 396 0 4 1067 503 315 69 38 chr11 63265097 63265288 -58578568 - MLT1F LTR MaLR -123 425 234 4 1067 1266 205 60 36 chr11 63265442 63265793 -58578063 + ORR1D2 LTR MaLR 11 354 -5 4 1067 587 210 78 39 chr11 63269537 63269760 -58574096 - RMER17C LTR ERVK 0 410 82 4 1067 1275 37 0 0 chr11 63269760 63269921 -58573935 + (GA)n Simple_repeat Simple_repeat 2 162 0 4 1067 360 221 26 117 chr11 63269921 63270007 -58573849 - RMER17C LTR ERVK -329 81 1 4 1067 707 154 76 46 chr11 63270402 63270637 -58573219 + RMER10B LTR ERVL 26 336 -62 4 1067 195 42 0 0 chr11 63270637 63270661 -58573195 + (CTAAT)n Simple_repeat Simple_repeat 4 27 0 4 1067 570 176 161 50 chr11 63270661 63270703 -58573153 + RMER10B LTR ERVL 337 396 -2 4 1067 298 240 115 0 chr11 63271102 63271198 -58572658 + MLT1A1 LTR MaLR 7 113 -295 4 1067 589 162 1132 0 chr11 63271396 63271498 -58572358 - ORR1C1 LTR MaLR -141 237 169 4 1067 432 55 0 0 chr11 63271498 63271553 -58572303 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 4 1067 589 162 235 0 chr11 63271553 63271631 -58572225 - ORR1C1 LTR MaLR -210 168 71 4 1067 2692 172 44 2 chr11 63271651 63272146 -58571710 + RMER20A LTR ERVK 1 516 0 4 1067 730 225 218 11 chr11 63273066 63273202 -58570654 - MERVL_2A-int LTR ERVL -5201 560 375 4 1067 854 237 35 10 chr11 63273202 63273402 -58570454 - B3 SINE B2 -9 207 3 4 1067 730 225 218 11 chr11 63273402 63273526 -58570330 - MERVL_2A-int LTR ERVL -5387 374 246 4 1067 266 259 25 107 chr11 63273571 63273692 -58570164 - MERVL_2A-int LTR ERVL -5650 111 1 4 1067 969 266 93 51 chr11 63273726 63274154 -58569702 + MT2A LTR ERVL 88 533 0 4 1067 232 276 26 13 chr11 63274245 63274322 -58569534 - ID4_ SINE ID 0 83 6 4 1067 1038 39 0 0 chr11 63274900 63275027 -58568829 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1067 1165 108 11 6 chr11 63275123 63275316 -58568540 - B2_Mm1a SINE B2 -3 213 21 4 1067 612 106 0 0 chr11 63275918 63276012 -58567844 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1067 316 206 41 0 chr11 63276032 63276105 -58567751 - ID4 SINE ID 0 83 8 4 1067 233 293 71 24 chr11 63278037 63278144 -58565712 + MIR SINE MIR 40 150 -118 4 1067 210 204 0 58 chr11 63278326 63278378 -58565478 + CT-rich Low_complexity Low_complexity 2 50 0 4 1067 369 333 154 35 chr11 63278379 63278839 -58565017 + MLT1G1 LTR MaLR 60 574 -5 4 1067 494 93 12 0 chr11 63278876 63278962 -58564894 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 1067 461 325 132 15 chr11 63279536 63279870 -58563986 - MamRep605 Unknown Unknown -136 740 368 4 1067 702 200 42 14 chr11 63280367 63280509 -58563347 + RSINE1 SINE B4 4 149 -16 4 1067 3124 6 0 109 chr11 63281218 63281630 -58562226 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1067 57105 19 15 0 chr11 63281640 63287996 -58555860 + IAPEz-int LTR ERVK 35 6481 0 4 1067 3199 5 0 76 chr11 63287996 63288393 -58555463 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1067 312 284 39 19 chr11 63288467 63288571 -58555285 - PB1D10 SINE Alu -9 108 3 4 1067 333 304 137 32 chr11 63289581 63289829 -58554027 + B4A SINE B4 1 274 -18 4 1067 1590 169 118 3 chr11 63291321 63291432 -58552424 - ORR1D1 LTR MaLR 0 374 230 4 1067 912 65 0 0 chr11 63291432 63291556 -58552300 + (CAGG)n Simple_repeat Simple_repeat 3 126 0 4 1067 1590 169 118 3 chr11 63291556 63291765 -58552091 - ORR1D1 LTR MaLR -145 229 18 4 1067 1213 62 0 0 chr11 63291784 63291930 -58551926 - B1_Mus1 SINE Alu 0 148 3 4 1067 241 77 38 19 chr11 63292000 63292053 -58551803 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1067 340 225 90 39 chr11 63292217 63292362 -58551494 - MLT1D LTR MaLR 0 680 398 4 1067 1178 147 147 0 chr11 63293179 63293376 -58550480 + URR1A DNA MER1_type 1 226 0 4 1067 410 127 0 14 chr11 63293399 63293416 -58550440 + (TC)n Simple_repeat Simple_repeat 2 18 0 4 1067 1345 39 11 11 chr11 63293416 63293596 -58550260 + (CCCCCT)n Simple_repeat Simple_repeat 1 180 0 4 1067 410 127 0 14 chr11 63293596 63293650 -58550206 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1067 955 165 145 0 chr11 63293775 63294010 -58549846 + MTD LTR MaLR 15 284 -137 4 1067 3103 94 15 6 chr11 63294022 63294493 -58549363 - RLTR13D5 LTR ERVK 0 1023 549 4 1067 3185 178 143 24 chr11 63294499 63295252 -58548604 + RMER19B LTR ERVK 60 902 0 4 1067 837 169 0 57 chr11 63295446 63295603 -58548253 - B1_Mus1 SINE Alu 0 148 1 4 1067 336 304 22 122 chr11 63295689 63295918 -58547938 + MIR SINE MIR 35 240 -22 4 1067 198 173 40 0 chr11 63297225 63297300 -58546556 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1067 1374 48 4 0 chr11 63298108 63298382 -58545474 + (CA)n Simple_repeat Simple_repeat 1 274 0 4 1067 391 227 234 0 chr11 63298983 63299111 -58544745 + RSINE1 SINE B4 3 160 -5 4 1067 32 0 0 0 chr11 63299113 63299145 -58544711 + AT_rich Low_complexity Low_complexity 1 32 0 4 1067 550 244 67 30 chr11 63299355 63299668 -58544188 - RMER17C LTR ERVK 0 410 1 4 1067 267 31 0 0 chr11 63300116 63300148 -58543708 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1067 185 256 47 35 chr11 63300472 63300557 -58543299 - MIRc SINE MIR -103 165 80 4 1067 29 0 0 0 chr11 63301255 63301284 -58542572 + AT_rich Low_complexity Low_complexity 1 29 0 4 1067 208 250 40 27 chr11 63301390 63301464 -58542392 - MER5A DNA MER1_type -13 176 102 4 1067 1020 118 63 68 chr11 63301487 63301678 -58542178 - B2_Mm2 SINE B2 -5 190 1 4 1067 11556 88 7 1 chr11 63301710 63304034 -58539822 - L1_Mus3 LINE L1 -7 6631 4292 4 1067 8140 93 40 4 chr11 63304030 63305240 -58538616 + L1_Mus3 LINE L1 3041 4294 -1589 4 1067 273 264 110 97 chr11 63306096 63306251 -58537605 - MLT2B3 LTR ERVL -2 552 396 4 1067 670 154 59 0 chr11 63307052 63307188 -58536668 + ORR1D2 LTR MaLR 1 144 -226 4 1067 548 202 68 23 chr11 63307207 63307339 -58536517 + B1_Mur3 SINE Alu 11 148 -1 4 1067 199 0 65 0 chr11 63307358 63307389 -58536467 + (CAAAC)n Simple_repeat Simple_repeat 3 35 0 4 1067 685 226 115 19 chr11 63307397 63307605 -58536251 + ORR1D2 LTR MaLR 143 370 0 4 1068 1007 117 0 22 chr11 63307849 63308033 -58535823 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1068 594 329 128 44 chr11 63308111 63308611 -58535245 - MLT1F LTR MaLR -4 544 3 4 1068 360 0 0 0 chr11 63308797 63308837 -58535019 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1068 219 69 0 0 chr11 63309065 63309094 -58534762 + (C)n Simple_repeat Simple_repeat 1 29 0 4 1068 625 255 5 107 chr11 63309327 63309542 -58534314 - B4A SINE B4 0 292 100 4 1068 241 288 18 46 chr11 63309812 63309921 -58533935 + MLT1A1 LTR MaLR 302 407 -1 4 1068 219 114 0 0 chr11 63310300 63310335 -58533521 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1068 356 239 9 9 chr11 63310633 63310743 -58533113 - L1M5 LINE L1 -1771 4375 4266 4 1068 883 256 108 69 chr11 63310861 63311025 -58532831 + L1M3 LINE L1 4856 5020 -1120 5 1068 623 271 56 20 chr11 63311025 63311221 -58532635 + B3 SINE B2 2 204 -12 5 1068 883 235 115 53 chr11 63311221 63311592 -58532264 + L1M3 LINE L1 5021 5416 -752 5 1068 587 231 180 12 chr11 63311661 63311891 -58531965 + MT2A LTR ERVL 318 588 -13 5 1068 29 28 0 0 chr11 63311891 63311927 -58531929 + AT_rich Low_complexity Low_complexity 1 36 0 5 1068 439 259 93 0 chr11 63312015 63312123 -58531733 + RSINE1 SINE B4 11 128 -37 5 1068 2229 155 18 25 chr11 63312224 63312621 -58531235 + ORR1B1 LTR MaLR 1 394 0 5 1068 3472 50 28 7 chr11 63313382 63313809 -58530047 + RLTR10C LTR ERVK 1 436 0 5 1068 2512 123 17 49 chr11 63314181 63314667 -58529189 - BGLII_B LTR ERVK 0 441 1 5 1068 487 394 15 19 chr11 63314857 63315121 -58528735 + RMER15-int LTR ERVL 26 288 -4711 5 1068 1627 206 84 16 chr11 63315137 63315516 -58528340 - MTD LTR MaLR -14 405 1 5 1068 2307 231 288 40 chr11 63315518 63316523 -58527333 - MTD-int LTR MaLR -2 1256 3 5 1068 1431 201 104 26 chr11 63316529 63316912 -58526944 - MTD LTR MaLR -4 415 3 5 1068 1083 290 81 68 chr11 63317095 63317628 -58526228 + RMER15-int LTR ERVL 4350 4889 -110 5 1068 764 207 7 0 chr11 63317644 63317784 -58526072 + B1_Mur1 SINE Alu 2 142 -7 5 1068 423 0 0 0 chr11 63318196 63318243 -58525613 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1068 432 321 54 95 chr11 63318338 63318579 -58525277 - B4A SINE B4 -59 233 3 5 1068 821 235 66 0 chr11 63318604 63318800 -58525056 + B3 SINE B2 6 214 -2 5 1068 396 171 0 0 chr11 63319506 63319588 -58524268 + (CAGG)n Simple_repeat Simple_repeat 2 83 0 5 1068 509 144 0 8 chr11 63319622 63319741 -58524115 + GA-rich Low_complexity Low_complexity 2 119 0 5 1068 991 175 29 111 chr11 63321043 63321287 -58522569 + URR1B DNA MER1_type 1 224 -1 5 1068 261 0 0 0 chr11 63321593 63321622 -58522234 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1068 954 56 0 0 chr11 63321622 63321747 -58522109 - B1_Mus1 SINE Alu 0 148 24 5 1068 309 274 135 19 chr11 63322180 63322336 -58521520 - LTR33A LTR ERVL -9 511 338 5 1068 561 308 58 27 chr11 63322571 63322865 -58520991 + L1MC1 LINE L1 5944 6246 -87 5 1068 717 284 58 22 chr11 63322981 63323258 -58520598 - L1MB3 LINE L1 -62 6121 5835 5 1068 245 128 0 21 chr11 63323261 63323309 -58520547 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 1068 396 59 0 0 chr11 63323945 63323996 -58519860 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1068 219 238 0 0 chr11 63324575 63324617 -58519239 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1068 474 296 17 58 chr11 63324620 63324792 -58519064 - RSINE1 SINE B4 0 165 1 5 1068 1051 171 38 81 chr11 63325703 63325938 -58517918 - URR1A DNA MER1_type 0 226 2 5 1068 309 288 49 78 chr11 63326672 63326782 -58517074 + L1MEg LINE L1 1208 1315 -4769 5 1068 671 247 20 0 chr11 63326782 63326928 -58516928 - B1_Mur1 SINE Alu 0 149 1 5 1068 309 288 49 78 chr11 63326928 63327164 -58516692 + L1MEg LINE L1 1316 1544 -4540 5 1068 318 320 36 49 chr11 63327220 63327584 -58516272 + L1M2 LINE L1 2079 2447 -3400 5 1068 644 307 26 145 chr11 63328017 63328478 -58515378 + MTD LTR MaLR 1 406 -13 5 1068 388 281 133 20 chr11 63328489 63328685 -58515171 - L1M3 LINE L1 -391 5789 5572 5 1068 275 289 0 13 chr11 63328754 63328831 -58515025 - PB1D10 SINE Alu -8 109 34 5 1068 21 0 0 0 chr11 63329640 63329661 -58514195 + AT_rich Low_complexity Low_complexity 1 21 0 5 1068 279 342 42 77 chr11 63330044 63330080 -58513776 - MER20 DNA MER1_type -2 217 193 5 1068 1497 45 0 11 chr11 63330080 63330262 -58513594 - B2_Mm2 SINE B2 -14 181 2 5 1068 279 342 42 77 chr11 63330262 63330393 -58513463 - MER20 DNA MER1_type -27 192 56 5 1068 3105 33 3 8 chr11 63330398 63330763 -58513093 + RLTR10B2 LTR ERVK 3 365 0 5 1068 1032 217 157 5 chr11 63331105 63331392 -58512464 + MTD LTR MaLR 8 363 -56 5 1068 597 252 12 56 chr11 63332863 63333023 -58510833 + RSINE1 SINE B4 5 157 -8 5 1068 375 23 0 0 chr11 63333024 63333068 -58510788 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1068 1191 48 7 0 chr11 63333071 63333217 -58510639 + B1_Mus1 SINE Alu 2 148 0 5 1068 2555 277 64 101 chr11 63333254 63333862 -58509994 - Lx8 LINE L1 -700 6773 6175 5 1068 417 20 0 0 chr11 63333862 63333912 -58509944 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1068 2555 264 41 52 chr11 63333912 63334626 -58509230 - Lx8 LINE L1 -1299 6174 5490 5 1068 35 24 0 0 chr11 63334699 63334741 -58509115 + AT_rich Low_complexity Low_complexity 1 42 0 5 1068 727 166 21 0 chr11 63335760 63335905 -58507951 + URR1A DNA MER1_type 79 226 0 5 1068 194 0 0 37 chr11 63336203 63336230 -58507626 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 5 1068 663 225 29 0 chr11 63337125 63337263 -58506593 + B3 SINE B2 1 142 -74 5 1068 235 243 40 26 chr11 63337859 63337935 -58505921 + MER63D DNA AcHobo 308 384 -677 5 1068 233 241 19 0 chr11 63337953 63338007 -58505849 + CT-rich Low_complexity Low_complexity 2 56 0 5 1068 405 0 0 0 chr11 63338990 63339035 -58504821 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1068 249 57 0 0 chr11 63341231 63341266 -58502590 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1068 260 308 42 70 chr11 63341489 63341632 -58502224 + MER5A DNA MER1_type 7 145 -44 5 1068 332 295 36 53 chr11 63342494 63342688 -58501168 + MER57C2 LTR ERV1 54 253 -158 5 1068 377 277 0 0 chr11 63342760 63342854 -58501002 + Lx8 LINE L1 7049 7142 -331 5 1068 21 57 0 0 chr11 63343190 63343225 -58500631 + AT_rich Low_complexity Low_complexity 1 35 0 5 1068 43 71 0 0 chr11 63343277 63343362 -58500494 + AT_rich Low_complexity Low_complexity 1 85 0 5 1068 3177 289 93 14 chr11 63343378 63344511 -58499345 - Lx8 LINE L1 -30 7443 6222 5 1068 530 29 0 14 chr11 63344545 63344614 -58499242 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1068 330 149 111 33 chr11 63344644 63344734 -58499122 + MTC LTR MaLR 310 406 -15 5 1068 337 236 37 130 chr11 63344739 63344900 -58498956 + MTC-int LTR MaLR 1 146 -1112 5 1068 2104 177 85 34 chr11 63344900 63345447 -58498409 - RMER16 LTR ERVK 0 533 1 5 1068 439 262 25 74 chr11 63345447 63345686 -58498170 + MTC-int LTR MaLR 312 428 -830 5 1068 1233 215 8 0 chr11 63345668 63345910 -58497946 + MTD LTR MaLR 102 345 -74 5 1068 391 230 0 54 chr11 63349513 63349605 -58494251 + B3 SINE B2 3 89 -127 5 1068 482 333 40 0 chr11 63350159 63350285 -58493571 - RSINE1 SINE B4 -21 144 14 5 1068 693 344 103 15 chr11 63350474 63350881 -58492975 - MLT1F LTR MaLR -12 536 94 5 1068 732 23 0 0 chr11 63351674 63351760 -58492096 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 1068 489 244 114 0 chr11 63352024 63352147 -58491709 - ID_B1 SINE B4 -5 219 83 5 1068 564 303 54 22 chr11 63353376 63353653 -58490203 - B4A SINE B4 -4 288 3 5 1068 268 288 14 0 chr11 63355047 63355120 -58488736 - L2a LINE L2 -74 3352 3279 5 1068 626 309 56 12 chr11 63355156 63355408 -58488448 - Tigger7 DNA MER2_type -10 2481 2219 5 1068 774 183 38 32 chr11 63355696 63355882 -58487974 + Lx7 LINE L1 7021 7207 -489 5 1068 266 234 47 0 chr11 63355882 63355946 -58487910 + Lx7 LINE L1 7172 7238 -458 5 1068 973 164 5 38 chr11 63356052 63356236 -58487620 + Lx7 LINE L1 7239 7416 -280 5 1068 261 0 0 0 chr11 63356411 63356440 -58487416 + (TAAG)n Simple_repeat Simple_repeat 2 30 0 5 1068 369 322 194 31 chr11 63357761 63358117 -58485739 + MER45B DNA Tip100 7 420 -620 5 1068 732 273 22 11 chr11 63358154 63358176 -58485680 - B3A SINE B2 -10 188 167 5 1068 459 0 0 0 chr11 63358176 63358227 -58485629 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1068 732 273 22 11 chr11 63358227 63358389 -58485467 - B3A SINE B2 -32 166 2 5 1068 270 306 12 0 chr11 63358392 63358477 -58485379 + MER45B DNA Tip100 448 533 -507 5 1068 650 151 41 0 chr11 63358531 63358703 -58485153 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1068 537 270 233 4 chr11 63358786 63359035 -58484821 + MER45B DNA Tip100 735 1040 0 5 1068 480 294 7 29 chr11 63360203 63360343 -58483513 + RSINE1 SINE B4 13 149 -16 5 1068 501 92 0 0 chr11 63360375 63360451 -58483405 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1068 244 401 14 14 chr11 63360707 63360846 -58483010 - MER106B DNA MER1_type -905 154 16 5 1068 28 0 0 0 chr11 63361538 63361566 -58482290 + AT_rich Low_complexity Low_complexity 1 28 0 5 1068 487 334 56 27 chr11 63361628 63361895 -58481961 - MTD LTR MaLR -139 240 1 5 1068 1044 256 7 40 chr11 63361924 63362162 -58481694 + B4 SINE B4 3 236 -56 5 1068 2045 165 13 11 chr11 63362162 63362535 -58481321 + ORR1D1 LTR MaLR 1 374 0 5 1068 1044 256 7 40 chr11 63362535 63362573 -58481283 + B4 SINE B4 237 270 -22 5 1068 303 291 17 17 chr11 63362599 63362718 -58481138 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 5 1068 362 377 25 86 chr11 63362752 63362859 -58480997 + L1M4 LINE L1 4523 4601 -1545 5 1068 561 208 0 84 chr11 63362859 63362990 -58480866 + PB1D7 SINE Alu 1 120 0 5 1068 362 377 25 86 chr11 63362990 63363323 -58480533 + L1M4 LINE L1 4602 4936 -1210 5 1068 318 244 58 18 chr11 63363364 63363535 -58480321 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 5 1068 352 216 32 10 chr11 63363541 63363644 -58480212 + PB1D10 SINE Alu 7 116 -1 5 1068 1211 55 0 0 chr11 63363668 63363814 -58480042 + B1_Mus1 SINE Alu 2 147 -1 5 1068 219 139 0 0 chr11 63363815 63363851 -58480005 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1068 592 86 28 41 chr11 63365153 63365298 -58478558 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 5 1068 225 295 38 13 chr11 63365352 63365431 -58478425 - ID4 SINE ID -1 82 2 5 1068 1450 277 90 21 chr11 63365444 63365567 -58478289 - L1MA6 LINE L1 -5 6295 6162 5 1068 180 0 0 0 chr11 63365567 63365587 -58478269 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1068 1450 277 90 21 chr11 63365587 63366119 -58477737 - L1MA6 LINE L1 -139 6161 5595 5 1068 277 319 105 52 chr11 63366999 63367071 -58476785 + MER5A DNA MER1_type 6 79 -110 5 1068 350 276 48 0 chr11 63367071 63367176 -58476680 + PB1D10 SINE Alu 5 114 -3 5 1068 277 319 105 52 chr11 63367176 63367275 -58476581 + MER5A DNA MER1_type 80 186 -3 5 1068 289 299 62 42 chr11 63367868 63368060 -58475796 + L1MB4 LINE L1 5866 6061 -119 5 1068 233 300 130 0 chr11 63368234 63368334 -58475522 + PB1D10 SINE Alu 3 115 -2 5 1068 412 243 29 0 chr11 63368542 63368645 -58475211 + PB1D10 SINE Alu 5 110 -7 5 1068 600 271 70 35 chr11 63368651 63368938 -58474918 + L1MA4A LINE L1 5315 5611 -689 5 1068 208 161 35 18 chr11 63368938 63368995 -58474861 + A-rich Low_complexity Low_complexity 3 60 0 6 1068 776 233 42 47 chr11 63368999 63369211 -58474645 + B3 SINE B2 1 211 -5 6 1068 369 307 134 0 chr11 63369296 63369423 -58474433 + Lx7 LINE L1 5600 5743 -1953 6 1068 449 255 9 38 chr11 63369423 63369552 -58474304 + B1_Mur3 SINE Alu 12 135 -14 6 1068 297 238 118 26 chr11 63369560 63369698 -58474158 + L1MA4A LINE L1 5705 5923 -380 5 1068 220 320 10 0 chr11 63369843 63369940 -58473916 + G-rich Low_complexity Low_complexity 4 101 0 6 1068 445 273 99 139 chr11 63371098 63371472 -58472384 + MLT1A0 LTR MaLR 1 359 -6 6 1068 638 273 97 29 chr11 63371614 63371662 -58472194 - ORR1E LTR MaLR 0 359 316 6 1068 1795 142 107 50 chr11 63371662 63372025 -58471831 + ORR1C2 LTR MaLR 1 384 0 6 1068 638 273 97 29 chr11 63372025 63372214 -58471642 - ORR1E LTR MaLR -44 315 106 6 1068 651 212 0 0 chr11 63372216 63372362 -58471494 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 6 1068 532 208 0 0 chr11 63372365 63372466 -58471390 - ORR1E LTR MaLR -253 106 6 6 1068 728 116 27 20 chr11 63372630 63372779 -58471077 + (CATA)n Simple_repeat Simple_repeat 1 150 0 6 1068 642 270 60 63 chr11 63373355 63373640 -58470216 - MER2 DNA MER2_type -31 314 31 6 1068 672 286 53 22 chr11 63373963 63374285 -58469571 + L1M5 LINE L1 5287 5618 -506 6 1068 591 15 0 0 chr11 63376003 63376071 -58467785 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1068 238 257 40 13 chr11 63376739 63376814 -58467042 + MLT1A0 LTR MaLR 40 116 -249 6 1068 432 353 74 38 chr11 63376817 63377252 -58466604 + MT2A LTR ERVL 1 427 -106 6 1068 342 0 0 0 chr11 63377310 63377348 -58466508 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1068 204 40 0 0 chr11 63377382 63377407 -58466449 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1068 713 263 51 51 chr11 63377417 63377673 -58466183 + MLT1A0 LTR MaLR 110 365 0 6 1068 2177 153 79 3 chr11 63378048 63378414 -58465442 - ORR1B1 LTR MaLR 0 394 1 6 1068 506 37 37 12 chr11 63378452 63378534 -58465322 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 6 1068 908 243 55 144 chr11 63378588 63378991 -58464865 - Lx8 LINE L1 0 7473 7107 6 1068 183 42 0 0 chr11 63379782 63379806 -58464050 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1068 250 275 0 59 chr11 63379831 63379916 -58463940 + ID2 SINE ID 4 83 0 6 1068 1031 310 110 10 chr11 63380213 63380777 -58463079 - L1MA8 LINE L1 -237 6066 5439 6 1068 239 214 35 18 chr11 63381089 63381146 -58462710 + B1F2 SINE Alu 2 59 -90 6 1068 182 355 46 118 chr11 63381249 63381402 -58462454 + MIR SINE MIR 2 143 -119 6 1068 508 291 20 34 chr11 63381623 63381769 -58462087 + RSINE1 SINE B4 4 147 -18 6 1068 4188 129 24 11 chr11 63382053 63382792 -58461064 + RMER6A LTR ERVK 1 749 -7 6 1068 224 326 129 2 chr11 63383314 63383456 -58460400 + MIRb SINE MIR 93 253 -9 6 1068 252 312 54 15 chr11 63384309 63384514 -58459342 + L1MC4 LINE L1 7466 7678 -364 6 1068 385 298 53 18 chr11 63384736 63384907 -58458949 - L1MC4 LINE L1 -1064 6978 6802 6 1068 2103 208 29 72 chr11 63385072 63385630 -58458226 - RMER5 LTR ERV1 0 534 1 6 1068 369 0 0 0 chr11 63385731 63385772 -58458084 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1068 400 267 49 85 chr11 63385795 63385959 -58457897 + B3 SINE B2 57 214 -2 6 1068 331 292 21 35 chr11 63386646 63386788 -58457068 + MLT1A1 LTR MaLR 269 408 0 6 1068 1205 96 6 0 chr11 63387688 63387866 -58455990 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 6 1068 517 322 49 56 chr11 63387871 63388157 -58455699 - B4A SINE B4 -8 284 1 6 1068 2077 112 28 12 chr11 63390339 63390663 -58453193 - ORR1A4 LTR MaLR 0 329 1 6 1068 485 325 75 51 chr11 63390835 63390956 -58452900 + B4 SINE B4 8 123 -169 6 1068 360 0 0 0 chr11 63390956 63390996 -58452860 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1068 485 292 43 89 chr11 63390996 63391169 -58452687 + B4 SINE B4 75 266 -26 6 1068 306 0 0 0 chr11 63391170 63391204 -58452652 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1068 459 0 0 0 chr11 63391204 63391254 -58452602 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1068 250 246 46 92 chr11 63391267 63391419 -58452437 + B1F SINE Alu 5 149 0 6 1068 345 300 0 8 chr11 63393022 63393143 -58450713 - L1MA7 LINE L1 -183 6108 5989 6 1068 528 295 48 0 chr11 63393186 63393413 -58450443 + L1MA6 LINE L1 5718 5955 -345 6 1068 311 311 16 16 chr11 63393778 63393902 -58449954 - L1MA5 LINE L1 -2 6298 6175 6 1068 1027 296 88 16 chr11 63394080 63394737 -58449119 - L1MA5 LINE L1 -396 5904 5198 6 1068 275 323 45 15 chr11 63395825 63395957 -58447899 + MLT1A1 LTR MaLR 3 138 -270 6 1068 282 256 238 8 chr11 63396128 63396250 -58447606 + B3A SINE B2 21 170 -46 6 1068 224 241 0 18 chr11 63397947 63398002 -58445854 + (CAT)n Simple_repeat Simple_repeat 1 54 0 6 1068 198 103 0 0 chr11 63398078 63398107 -58445749 + (TCC)n Simple_repeat Simple_repeat 2 30 0 6 1068 460 304 153 67 chr11 63398209 63398523 -58445333 + MLT1A0 LTR MaLR 23 363 -2 6 1068 355 366 104 32 chr11 63400068 63400415 -58443441 + MER20B DNA MER1_type 6 377 -406 6 1068 22 35 0 0 chr11 63400555 63400584 -58443272 + AT_rich Low_complexity Low_complexity 1 29 0 6 1068 393 250 41 41 chr11 63401904 63402025 -58441831 + RSINE1 SINE B4 44 164 -1 6 1068 1736 127 18 73 chr11 63403046 63403386 -58440470 + ORR1A4 LTR MaLR 1 321 -8 6 1068 293 256 152 11 chr11 63403825 63404068 -58439788 - ORR1E LTR MaLR -7 372 73 6 1068 760 224 0 5 chr11 63404164 63404348 -58439508 - ORR1E-int LTR MaLR -109 1261 1079 6 1068 601 263 30 0 chr11 63404349 63404482 -58439374 + B1_Mur1 SINE Alu 1 137 -12 6 1068 1776 317 88 41 chr11 63404482 63405465 -58438391 - ORR1E-int LTR MaLR -551 1029 1 6 1068 482 336 65 16 chr11 63405467 63405773 -58438083 - ORR1E LTR MaLR 0 359 39 6 1068 349 306 49 8 chr11 63405985 63406107 -58437749 + L1MC3 LINE L1 6725 6851 -934 6 1068 215 350 133 19 chr11 63406397 63406502 -58437354 - PB1 SINE Alu -5 122 6 6 1068 249 227 53 0 chr11 63406920 63406995 -58436861 + L1MC5 LINE L1 7778 7856 -105 6 1068 366 156 0 0 chr11 63407226 63407290 -58436566 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1068 3056 20 3 0 chr11 63407290 63407631 -58436225 - ORR1A0 LTR MaLR -4 342 1 6 1068 13733 57 24 5 chr11 63407631 63409389 -58434467 - ORR1A0-int LTR MaLR 0 1792 1 6 1068 3039 20 9 0 chr11 63409389 63409732 -58434124 - ORR1A0 LTR MaLR 0 346 1 6 1068 450 0 0 0 chr11 63409732 63409782 -58434074 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1068 2739 55 8 26 chr11 63409919 63410271 -58433585 + ORR1A1 LTR MaLR 1 346 0 6 1068 572 276 16 66 chr11 63410543 63410725 -58433131 - B3 SINE B2 -39 177 5 6 1068 25 0 0 0 chr11 63410870 63410895 -58432961 + AT_rich Low_complexity Low_complexity 1 25 0 6 1068 449 341 0 0 chr11 63412253 63412382 -58431474 - RSINE1 SINE B4 -16 149 21 6 1068 2113 248 25 52 chr11 63412465 63413027 -58430829 + RMER15 LTR ERVL 27 573 -2 6 1068 183 42 0 0 chr11 63413087 63413111 -58430745 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1068 725 0 12 0 chr11 63414063 63414148 -58429708 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 1068 522 0 0 0 chr11 63414149 63414207 -58429649 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1068 447 19 0 0 chr11 63414491 63414543 -58429313 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1068 276 290 21 0 chr11 63415606 63415699 -58428157 + MLT1A1 LTR MaLR 78 172 -295 6 1068 784 134 7 7 chr11 63416165 63416308 -58427548 - URR1B DNA MER1_type 0 225 83 6 1068 357 267 159 33 chr11 63416166 63416348 -58427508 + CYRA11_Mm Unknown Y-chromosome 172 376 -241 6 1068 328 269 0 55 chr11 63416843 63416953 -58426903 + MLT1A1 LTR MaLR 305 408 0 6 1068 516 293 52 77 chr11 63419027 63419260 -58424596 + B4A SINE B4 1 227 -65 6 1068 531 0 0 0 chr11 63419322 63419381 -58424475 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1068 413 270 126 49 chr11 63420375 63420707 -58423149 - ORR1E LTR MaLR 0 379 1 6 1068 318 307 17 34 chr11 63420707 63420825 -58423031 + MLT1I LTR MaLR 176 291 -120 6 1068 348 250 0 0 chr11 63421596 63421672 -58422184 + ID4 SINE ID 1 76 -7 6 1068 504 0 0 0 chr11 63421672 63421728 -58422128 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 6 1068 477 0 0 0 chr11 63421786 63421839 -58422017 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 6 1068 30 45 0 0 chr11 63422378 63422422 -58421434 + AT_rich Low_complexity Low_complexity 1 44 0 6 1068 302 263 152 9 chr11 63422622 63422840 -58421016 - L1M5 LINE L1 -2032 5850 5588 6 1068 554 258 44 94 chr11 63423263 63423714 -58420142 + RLTR11B LTR ERVK 9 420 -33 6 1068 23 33 0 0 chr11 63423734 63423764 -58420092 + AT_rich Low_complexity Low_complexity 1 30 0 6 1068 254 29 0 28 chr11 63424190 63424226 -58419630 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 6 1068 256 330 86 11 chr11 63424275 63424450 -58419406 + L1M3d LINE L1 325 512 -5379 6 1068 391 286 67 34 chr11 63424770 63425038 -58418818 + L1M3d LINE L1 1000 1276 -4615 6 1068 434 36 0 0 chr11 63425038 63425093 -58418763 - ORR1A2 LTR MaLR 0 326 272 6 1068 8716 24 0 3 chr11 63425095 63426134 -58417722 - L1Md_A LINE L1 0 6582 5548 6 1068 1540 134 5 1 chr11 63426134 63426405 -58417451 - ORR1A2 LTR MaLR -12 317 47 6 1068 891 246 80 13 chr11 63426467 63426706 -58417150 + B4 SINE B4 2 256 -36 6 1068 917 210 41 0 chr11 63426728 63426923 -58416933 + B3 SINE B2 9 211 -5 6 1068 543 53 0 0 chr11 63427555 63427630 -58416226 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 1068 420 299 59 33 chr11 63428032 63428184 -58415672 - RSINE1 SINE B4 -7 158 3 6 1068 180 0 0 0 chr11 63428905 63428925 -58414931 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1068 297 0 0 0 chr11 63429309 63429342 -58414514 + (TTA)n Simple_repeat Simple_repeat 1 33 0 6 1068 349 383 40 13 chr11 63429464 63429806 -58414050 - L2a LINE L2 -301 3125 2770 6 1068 335 181 40 27 chr11 63430603 63430677 -58413179 - L1MD3 LINE L1 -16 7979 7905 6 1068 268 48 30 61 chr11 63431291 63431357 -58412499 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1068 285 356 89 0 chr11 63433176 63433311 -58410545 + MER58A DNA MER1_type 1 147 -77 6 1068 541 304 80 77 chr11 63434539 63434888 -58408968 + ORR1E LTR MaLR 4 353 -6 6 1068 618 278 11 44 chr11 63434892 63435073 -58408783 + ORR1E-int LTR MaLR 1 175 -1405 6 1068 2759 312 91 36 chr11 63435461 63436731 -58407125 + ORR1E-int LTR MaLR 214 1553 -27 6 1068 291 228 12 12 chr11 63436710 63436790 -58407066 + ORR1E LTR MaLR 6 85 -289 6 1068 232 335 37 51 chr11 63436876 63437042 -58406814 + ORR1E LTR MaLR 205 364 -15 6 1068 4551 10 0 0 chr11 63437340 63437833 -58406023 - MT2_Mm LTR ERVL 0 493 1 6 133 8126 46 0 0 chr11 63438363 63439960 -58403896 - L1Md_F2 LINE L1 -20 6562 4967 7 1069 4323 63 0 2 chr11 63439959 63440502 -58403354 + L1Md_F2 LINE L1 4416 4957 -926 7 1069 392 266 64 0 chr11 63441563 63441672 -58402184 - B1F SINE Alu -21 128 13 7 1069 250 252 44 102 chr11 63441935 63442072 -58401784 + L1MA6 LINE L1 6166 6294 -6 7 1069 1021 89 0 58 chr11 63443523 63443678 -58400178 + B1_Mus2 SINE Alu 2 147 0 7 1069 217 132 0 0 chr11 63443714 63443752 -58400104 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1069 1284 145 49 45 chr11 63445246 63445470 -58398386 - URR1B DNA MER1_type 0 225 1 7 1069 252 0 0 0 chr11 63447232 63447260 -58396596 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1069 218 208 75 0 chr11 63447521 63447618 -58396238 + CT-rich Low_complexity Low_complexity 1 104 0 7 1069 975 42 0 0 chr11 63447839 63447959 -58395897 + (CA)n Simple_repeat Simple_repeat 2 121 0 7 1069 305 299 88 0 chr11 63448325 63448472 -58395384 - MER2 DNA MER2_type -99 246 87 7 1069 363 191 6 51 chr11 63449238 63449272 -58394584 + polypyrimidine Low_complexity Low_complexity 139 171 0 7 1069 984 146 0 0 chr11 63449272 63449450 -58394406 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1069 363 191 6 51 chr11 63449450 63449592 -58394264 + CT-rich Low_complexity Low_complexity 4 138 0 7 1069 23 54 0 0 chr11 63449746 63449783 -58394073 + AT_rich Low_complexity Low_complexity 1 37 0 7 1069 469 243 35 18 chr11 63449801 63449914 -58393942 - B3A SINE B2 -25 173 59 7 1069 309 270 148 10 chr11 63451360 63451461 -58392395 + PB1D10 SINE Alu 2 116 -1 7 1069 23 0 0 0 chr11 63451462 63451485 -58392371 + AT_rich Low_complexity Low_complexity 1 23 0 7 1069 337 256 3 7 chr11 63452854 63452975 -58390881 + B1F SINE Alu 1 149 0 7 1069 442 224 0 27 chr11 63453025 63453135 -58390721 + B1F SINE Alu 37 143 -6 7 1069 1464 265 108 43 chr11 63453294 63453960 -58389896 - MTD-int LTR MaLR -528 730 22 7 1069 320 245 113 138 chr11 63453979 63454056 -58389800 - MTD LTR MaLR 0 379 323 7 1069 388 0 39 0 chr11 63454056 63454108 -58389748 + (CATA)n Simple_repeat Simple_repeat 2 55 0 7 1069 1274 207 92 3 chr11 63454108 63454423 -58389433 - MTD LTR MaLR -52 367 25 7 1069 302 128 31 41 chr11 63454426 63454524 -58389332 + (CA)n Simple_repeat Simple_repeat 1 97 0 7 1069 246 125 0 0 chr11 63456493 63456541 -58387315 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1069 561 247 11 74 chr11 63456544 63456719 -58387137 - B3A SINE B2 -34 164 1 7 1069 3729 176 51 107 chr11 63459243 63460198 -58383658 + RMER19B LTR ERVK 1 902 0 7 1069 36076 35 0 0 chr11 63460415 63466072 -58377784 + L1Md_T LINE L1 1 5589 -297 7 1069 9122 7 0 0 chr11 63466072 63467068 -58376788 + L1Md_T LINE L1 5590 6585 0 7 1069 692 294 106 36 chr11 63467147 63467850 -58376006 + L1_Rod LINE L1 1170 1913 -3934 7 1069 351 0 0 0 chr11 63467981 63468020 -58375836 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1069 2342 101 42 11 chr11 63468022 63468403 -58375453 + RLTR10A LTR ERVK 19 411 0 7 1069 500 303 64 56 chr11 63469202 63469566 -58374290 - MTD LTR MaLR -8 371 2 7 1069 303 290 152 49 chr11 63473300 63473543 -58370313 - MER57D LTR ERV1 -80 331 64 7 1069 459 0 0 0 chr11 63473585 63473636 -58370220 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1069 1360 257 50 15 chr11 63474015 63474358 -58369498 + Lx6 LINE L1 7102 7456 -4 7 1069 402 39 0 0 chr11 63474837 63474889 -58368967 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 7 1069 246 208 0 0 chr11 63475433 63475486 -58368370 + GA-rich Low_complexity Low_complexity 3 55 0 7 1069 238 304 0 0 chr11 63476311 63476367 -58367489 + MER2 DNA MER2_type 26 81 -264 7 1069 4366 191 28 62 chr11 63476494 63476917 -58366939 + Lx9 LINE L1 6373 6800 -844 7 1069 2775 84 47 3 chr11 63476917 63477300 -58366556 - MTB LTR MaLR 0 400 1 7 1069 4366 220 44 58 chr11 63477300 63478012 -58365844 + Lx9 LINE L1 6801 7283 -361 7 1069 236 215 188 31 chr11 63478030 63478126 -58365730 + PB1D10 SINE Alu 3 113 -4 7 1069 496 299 24 68 chr11 63479455 63479703 -58364153 + ORR1E LTR MaLR 1 237 -122 7 1069 537 305 48 86 chr11 63480002 63480353 -58363503 - ORR1E LTR MaLR -21 338 1 7 1069 444 330 99 30 chr11 63480414 63480779 -58363077 - MLT1C LTR MaLR -57 410 21 7 1069 21 0 0 0 chr11 63481512 63481533 -58362323 + AT_rich Low_complexity Low_complexity 1 21 0 7 1069 875 254 178 5 chr11 63481921 63482246 -58361610 + MTE2b LTR MaLR 1 370 0 7 1069 1053 221 13 13 chr11 63484943 63485168 -58358688 - URR1B DNA MER1_type 0 225 1 7 1069 342 0 0 0 chr11 63485249 63485287 -58358569 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1069 768 223 114 0 chr11 63486163 63486356 -58357500 + B3 SINE B2 1 215 -1 7 1069 3129 257 41 33 chr11 63486806 63487737 -58356119 + MurERV4-int LTR ERVK 921 1947 -3313 7 1069 3368 233 58 100 chr11 63487750 63489035 -58354821 + MYSERV-int LTR ERVK 5316 6547 -3 7 1069 747 132 232 16 chr11 63489039 63489224 -58354632 + RMER4B LTR ERVK 1 225 -360 7 1069 906 153 0 10 chr11 63489253 63489839 -58354017 + (CTG)n Simple_repeat Simple_repeat 1 579 0 7 1069 643 228 158 78 chr11 63489869 63490189 -58353667 + RMER4B LTR ERVK 305 570 -15 7 1069 1735 145 52 10 chr11 63490208 63490514 -58353342 + MTC LTR MaLR 103 421 0 7 1069 217 167 0 69 chr11 63490526 63490584 -58353272 + GA-rich Low_complexity Low_complexity 2 55 0 7 1069 788 200 41 26 chr11 63492530 63492725 -58351131 - B3A SINE B2 0 198 1 7 1069 421 351 59 21 chr11 63493045 63493559 -58350297 - L2b LINE L2 -237 3138 2602 7 1069 661 245 36 42 chr11 63495040 63495206 -58348650 - RSINE1 SINE B4 0 165 1 7 1069 628 275 79 0 chr11 63495428 63495548 -58348308 + MTEa LTR MaLR 43 163 -216 7 1069 234 0 0 0 chr11 63495548 63495574 -58348282 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1069 628 275 79 0 chr11 63495574 63495631 -58348225 + MTEa LTR MaLR 164 233 -146 7 1069 2423 306 48 37 chr11 63495620 63495741 -58348115 + ORR1C1-int LTR MaLR 160 281 -1299 7 1069 1247 65 6 0 chr11 63495741 63495911 -58347945 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 7 1069 2423 288 74 52 chr11 63495911 63496966 -58346890 + ORR1C1-int LTR MaLR 282 1417 -163 7 1069 451 151 96 11 chr11 63496965 63497059 -58346797 - B1F2 SINE Alu -5 144 43 7 1069 395 227 40 138 chr11 63497077 63497251 -58346605 + ORR1C1-int LTR MaLR 1416 1572 -8 7 1069 2086 151 18 39 chr11 63497251 63497637 -58346219 + ORR1C1 LTR MaLR 1 378 0 7 1069 521 193 26 36 chr11 63497674 63497816 -58346040 - MTE-int LTR MaLR -991 972 802 7 1069 1052 211 102 11 chr11 63497837 63498120 -58345736 + MTEb LTR MaLR 63 371 -8 7 1069 443 261 45 9 chr11 63498426 63498538 -58345318 + B1F SINE Alu 25 140 -9 7 1069 1491 117 71 0 chr11 63498559 63498798 -58345058 + Lx4A LINE L1 6801 7056 -2 7 1069 420 143 0 0 chr11 63498821 63498891 -58344965 + (TAA)n Simple_repeat Simple_repeat 1 70 0 7 1069 207 100 0 0 chr11 63498954 63498984 -58344872 + (GGGAA)n Simple_repeat Simple_repeat 2 31 0 7 1069 4326 60 4 7 chr11 63499450 63500000 -58343856 - L1_Mus2 LINE L1 0 6566 6019 7 1069 982 50 0 0 chr11 63500000 63500121 -58343735 - L1_Mus2 LINE L1 -548 6018 5898 1 1069 1094 57 6 33 chr11 63500494 63500676 -58343180 + (TC)n Simple_repeat Simple_repeat 1 177 0 2 1069 300 267 66 16 chr11 63500942 63501064 -58342792 - L1MB3 LINE L1 -90 6093 5966 3 1069 373 278 0 0 chr11 63501238 63501335 -58342521 - L1MB3 LINE L1 -301 5882 5786 3 1069 272 159 151 54 chr11 63503866 63503959 -58339897 + RMER15 LTR ERVL 452 553 -22 4 1069 326 291 60 60 chr11 63503978 63504161 -58339695 + ORR1E LTR MaLR 9 191 -168 5 1069 306 264 51 51 chr11 63504793 63504949 -58338907 + MIRb SINE MIR 113 268 0 6 1069 428 167 8 0 chr11 63506115 63506235 -58337621 + GA-rich Low_complexity Low_complexity 1 121 0 7 1069 291 292 55 108 chr11 63507013 63507413 -58336443 - L1MD LINE L1 -2097 4049 3637 8 1069 235 269 76 21 chr11 63507437 63507581 -58336275 - L1MD LINE L1 -2597 3549 3398 8 1069 236 313 152 45 chr11 63507587 63508139 -58335717 - L1MD LINE L1 -2786 3360 2750 9 1069 309 248 88 154 chr11 63508145 63508381 -58335475 - ORR1E LTR MaLR 0 379 136 1 1069 2296 138 6 3 chr11 63508381 63508736 -58335120 + RLTR15 LTR ERVK 2 357 -2 1 1069 309 290 32 151 chr11 63508736 63508789 -58335067 - ORR1E LTR MaLR -224 135 85 1 1069 21 36 0 0 chr11 63509078 63509106 -58334750 + AT_rich Low_complexity Low_complexity 1 28 0 1 1069 905 204 16 0 chr11 63509125 63509316 -58334540 + RLTR16 LTR ERVK 4 197 -308 1 1069 391 178 44 0 chr11 63509530 63509620 -58334236 - Lx6 LINE L1 -6 7454 7361 1 1069 679 301 63 76 chr11 63509673 63510068 -58333788 + RMER13A LTR ERVK 22 411 -449 1 1069 316 249 64 75 chr11 63510320 63510507 -58333349 - Lx7 LINE L1 -126 7570 7386 1 1069 3392 193 31 110 chr11 63510484 63510932 -58332924 - L1_Mur3 LINE L1 -3388 2492 2138 1 1069 907 181 7 0 chr11 63510932 63511081 -58332775 - B1_Mur4 SINE Alu 0 150 1 1 1069 3392 193 31 110 chr11 63511081 63511271 -58332585 - L1_Mur3 LINE L1 -3743 2137 1940 1 1069 491 0 17 0 chr11 63511271 63511330 -58332526 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1 1069 3392 193 31 110 chr11 63511330 63511727 -58332129 - L1_Mur3 LINE L1 -3941 1939 1540 1 1069 1818 296 83 61 chr11 63511714 63511959 -58331897 + Lx7 LINE L1 2650 2883 -3260 2 1069 248 0 31 0 chr11 63511959 63511991 -58331865 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1069 1161 55 14 0 chr11 63511995 63512140 -58331716 + B1_Mus2 SINE Alu 1 147 0 2 1069 1818 296 83 61 chr11 63512140 63513272 -58330584 + Lx7 LINE L1 2884 4063 -2080 2 1069 3122 153 40 0 chr11 63513273 63513359 -58330497 - RLTR20D LTR ERVK -2 566 479 2 1069 1059 75 0 0 chr11 63513359 63513505 -58330351 + (CA)n Simple_repeat Simple_repeat 2 147 0 2 1069 3122 153 40 0 chr11 63513505 63513962 -58329894 - RLTR20D LTR ERVK -90 478 2 2 1069 453 19 0 0 chr11 63513973 63514027 -58329829 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2 1069 1704 302 30 102 chr11 63514029 63514401 -58329455 + Lx7 LINE L1 4080 4413 -1730 2 1069 1247 118 0 35 chr11 63514401 63514603 -58329253 + B2_Mm2 SINE B2 1 195 0 2 1069 1704 302 30 102 chr11 63514603 63514856 -58329000 + Lx7 LINE L1 4414 4636 -1507 2 1069 1199 50 0 0 chr11 63514856 63514997 -58328859 + B1_Mm SINE Alu 1 141 -6 2 1069 1704 302 30 102 chr11 63514997 63515656 -58328200 + Lx7 LINE L1 4637 5273 -870 2 1069 522 0 0 0 chr11 63515725 63515783 -58328073 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1069 479 274 64 61 chr11 63515792 63516118 -58327738 + Lx7 LINE L1 5589 5925 -375 2 1069 22 35 0 0 chr11 63516513 63516542 -58327314 + AT_rich Low_complexity Low_complexity 1 29 0 2 1069 198 0 0 0 chr11 63516545 63516567 -58327289 + (TAA)n Simple_repeat Simple_repeat 2 23 0 3 1069 228 279 16 16 chr11 63516571 63516633 -58327223 - ORR1E LTR MaLR -297 62 1 3 1069 871 232 103 5 chr11 63517034 63517187 -58326669 + B3 SINE B2 3 175 -41 3 1069 423 0 0 0 chr11 63517187 63517234 -58326622 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 1069 871 232 103 5 chr11 63517234 63517275 -58326581 + B3 SINE B2 176 215 -1 3 1069 546 318 134 15 chr11 63518932 63519267 -58324589 + L2a LINE L2 3051 3425 -1 3 1069 297 0 0 0 chr11 63520170 63520203 -58323653 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1069 180 0 0 0 chr11 63520574 63520594 -58323262 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1069 211 331 94 8 chr11 63521540 63521668 -58322188 + B1F1 SINE Alu 2 140 -9 3 1069 574 253 180 0 chr11 63522645 63522823 -58321033 + B3 SINE B2 2 211 -5 3 1069 842 262 36 32 chr11 63523294 63523546 -58320310 + B4A SINE B4 20 272 -20 3 1069 315 0 0 0 chr11 63523627 63523662 -58320194 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1069 1017 240 88 22 chr11 63524166 63524439 -58319417 - MTD LTR MaLR 0 419 129 4 1069 512 203 53 13 chr11 63524444 63524594 -58319262 + Lx9 LINE L1 7489 7644 0 4 1069 285 253 49 37 chr11 63524602 63524684 -58319172 - MTD LTR MaLR -299 120 38 4 1069 249 33 0 0 chr11 63524702 63524732 -58319124 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1069 375 312 17 43 chr11 63524734 63524851 -58319005 - B3A SINE B2 -16 182 69 4 1069 7593 99 14 9 chr11 63526605 63527659 -58316197 - Lx LINE L1 -9 6645 5587 4 1069 717 162 19 0 chr11 63529047 63529201 -58314655 + GA-rich Low_complexity Low_complexity 1 157 0 4 1069 271 322 43 9 chr11 63529477 63529593 -58314263 + Tigger5 DNA MER2_type 2287 2406 0 4 1069 464 162 99 20 chr11 63530074 63530175 -58313681 - B3 SINE B2 -106 110 2 4 1069 376 223 61 18 chr11 63530197 63530311 -58313545 + PB1D9 SINE Alu 1 119 -1 4 1069 373 28 13 53 chr11 63530312 63530387 -58313469 + (CAAAA)n Simple_repeat Simple_repeat 3 74 0 5 1069 1822 124 83 3 chr11 63532465 63532789 -58311067 + RLTR15 LTR ERVK 3 352 -7 5 1069 771 246 16 30 chr11 63532965 63533225 -58310631 - MTE2a LTR MaLR 0 379 3 5 1069 22 0 0 0 chr11 63533604 63533626 -58310230 + AT_rich Low_complexity Low_complexity 1 22 0 5 1069 751 263 60 98 chr11 63534026 63534393 -58309463 - ORR1E LTR MaLR -6 353 1 5 1069 265 299 25 8 chr11 63534999 63535117 -58308739 - CR1_Mam LINE CR1 -578 1626 1507 5 1069 750 78 0 0 chr11 63535147 63535249 -58308607 + (GGGA)n Simple_repeat Simple_repeat 4 105 0 5 1069 234 0 0 0 chr11 63535542 63535568 -58308288 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1069 1470 161 3 82 chr11 63536416 63536733 -58307123 + RLTR11B LTR ERVK 162 453 0 5 1069 2492 134 30 52 chr11 63536766 63537206 -58306650 + RLTR23 LTR ERV1 1 430 0 5 1069 293 276 70 32 chr11 63537213 63537370 -58306486 - Lx7 LINE L1 -300 7173 7011 6 1069 642 297 73 22 chr11 63537389 63537661 -58306195 - Lx7 LINE L1 -1016 6457 6172 6 1069 559 183 0 32 chr11 63537664 63537850 -58306006 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1069 365 241 6 0 chr11 63537873 63538043 -58305813 + (TG)n Simple_repeat Simple_repeat 1 171 0 6 1069 2947 266 103 12 chr11 63538045 63539276 -58304580 - Lx7 LINE L1 -1531 6165 4826 6 1069 280 315 45 0 chr11 63539941 63540030 -58303826 - MER63D DNA AcHobo -693 368 276 6 1069 587 185 0 0 chr11 63540211 63540319 -58303537 + MTC LTR MaLR 1 108 -313 6 1069 548 29 14 0 chr11 63540326 63540396 -58303460 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1069 317 238 179 47 chr11 63540408 63540514 -58303342 - PB1D9 SINE Alu 0 120 1 6 1069 777 135 0 0 chr11 63540514 63540640 -58303216 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 6 1069 1744 266 30 26 chr11 63540649 63541154 -58302702 - Lx6 LINE L1 -4 7456 6950 6 1069 1397 169 99 14 chr11 63541154 63541437 -58302419 + MTC LTR MaLR 105 411 -10 6 1069 347 319 22 7 chr11 63541676 63541812 -58302044 - LTR78 LTR ERV1 -116 1188 1051 6 1069 237 203 61 30 chr11 63542755 63542821 -58301035 + L1MC2 LINE L1 6127 6194 -150 6 1069 681 57 32 32 chr11 63542876 63543002 -58300854 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 7 1069 270 0 0 0 chr11 63543086 63543116 -58300740 + (TTG)n Simple_repeat Simple_repeat 2 31 0 7 1069 365 221 23 23 chr11 63543786 63543874 -58299982 + MER5B DNA MER1_type 64 151 -27 7 1069 427 294 119 33 chr11 63544179 63544422 -58299434 - MER44A DNA MER2_type -28 311 48 7 1069 405 337 26 26 chr11 63545905 63546094 -58297762 + MER5A DNA MER1_type 1 189 0 7 1069 225 0 0 0 chr11 63546165 63546190 -58297666 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1069 731 316 49 30 chr11 63546206 63546633 -58297223 + L1MB3 LINE L1 5748 6182 -1 7 1069 440 245 93 0 chr11 63547011 63547150 -58296706 + ORR1D2 LTR MaLR 206 357 -13 7 1069 207 0 0 0 chr11 63547573 63547596 -58296260 + (CCA)n Simple_repeat Simple_repeat 1 23 0 7 1069 342 115 0 0 chr11 63549785 63549837 -58294019 + (TTG)n Simple_repeat Simple_repeat 1 52 0 7 1069 1196 48 0 20 chr11 63550249 63550398 -58293458 + B1_Mm SINE Alu 2 147 0 8 1069 343 213 51 41 chr11 63550608 63550706 -58293150 - B3 SINE B2 -117 99 1 8 1069 24 0 0 0 chr11 63550755 63550779 -58293077 + AT_rich Low_complexity Low_complexity 1 24 0 8 1069 252 0 0 0 chr11 63550966 63550994 -58292862 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1069 387 0 0 0 chr11 63550994 63551036 -58292820 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1069 21 0 0 0 chr11 63551634 63551655 -58292201 + AT_rich Low_complexity Low_complexity 1 21 0 8 1069 227 322 25 0 chr11 63552221 63552342 -58291514 + L1M5 LINE L1 3117 3240 -2906 8 1069 391 266 9 44 chr11 63552900 63553014 -58290842 + PB1D10 SINE Alu 6 115 -2 8 1069 332 88 410 29 chr11 63553153 63553258 -58290598 - B2_Mm2 SINE B2 -4 191 47 8 1069 1235 108 11 11 chr11 63553343 63553521 -58290335 - B2_Mm1t SINE B2 -14 179 2 8 1069 963 149 11 33 chr11 63553533 63553713 -58290143 - B2_Mm2 SINE B2 -19 176 1 9 1069 421 260 0 9 chr11 63553828 63553933 -58289923 - Tigger7 DNA MER2_type -19 2472 2369 9 1069 280 335 25 80 chr11 63553962 63554124 -58289732 + MLT1J2 LTR MaLR 117 269 -179 9 1069 3541 30 0 0 chr11 63554128 63554524 -58289332 - MTA_Mm LTR MaLR 0 396 1 9 1069 27 0 0 0 chr11 63555511 63555538 -58288318 + AT_rich Low_complexity Low_complexity 1 27 0 9 1069 1145 154 21 64 chr11 63556233 63556469 -58287387 - URR1A DNA MER1_type 0 226 1 9 1069 382 286 0 25 chr11 63558233 63558355 -58285501 - MLT1J1 LTR MaLR -2 442 324 9 1069 468 77 0 0 chr11 63558576 63558641 -58285215 + (TG)n Simple_repeat Simple_repeat 1 65 0 9 1069 338 116 41 21 chr11 63558644 63558741 -58285115 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 9 1069 192 77 0 0 chr11 63558759 63558785 -58285071 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 9 1069 2005 153 30 8 chr11 63559177 63559546 -58284310 + ORR1C2 LTR MaLR 8 384 0 1 1069 460 362 25 8 chr11 63559566 63559803 -58284053 + MER2 DNA MER2_type 104 344 -1 1 1069 1169 41 0 40 chr11 63560396 63560548 -58283308 + B1_Mm SINE Alu 2 147 0 1 1069 1409 174 131 24 chr11 63560624 63560839 -58283017 + ORR1D1 LTR MaLR 3 242 -132 1 1069 432 0 0 0 chr11 63560839 63560887 -58282969 + (CCTG)n Simple_repeat Simple_repeat 4 51 0 1 1069 1409 174 131 24 chr11 63560887 63561007 -58282849 + ORR1D1 LTR MaLR 243 373 -1 1 1069 291 232 62 10 chr11 63561770 63561866 -58281990 + L1MEd LINE L1 662 762 -5357 1 1069 234 301 14 14 chr11 63562336 63562410 -58281446 + GA-rich Low_complexity Low_complexity 6 79 0 1 1069 501 339 102 37 chr11 63562546 63563115 -58280741 + L1ME3B LINE L1 5283 5888 -352 1 1069 645 164 0 0 chr11 63563515 63563631 -58280225 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 1069 341 261 52 9 chr11 63563805 63563921 -58279935 - MLT1A0 LTR MaLR -60 305 185 1 1069 227 176 71 129 chr11 63565092 63565177 -58278679 - L1ME1 LINE L1 -71 6108 6029 1 1069 271 335 145 19 chr11 63565307 63565569 -58278287 - L1M5 LINE L1 -373 5806 5512 1 1069 491 292 16 25 chr11 63565743 63565913 -58277943 - B3A SINE B2 -19 174 9 1 1069 400 278 43 36 chr11 63565964 63566102 -58277754 + RSINE1 SINE B4 25 163 -2 1 1069 22 35 0 0 chr11 63567378 63567407 -58276449 + AT_rich Low_complexity Low_complexity 1 29 0 1 1069 242 29 29 0 chr11 63568866 63568901 -58274955 + (CAA)n Simple_repeat Simple_repeat 2 37 0 1 1069 1249 108 32 0 chr11 63569158 63569343 -58274513 + B2_Mm2 SINE B2 3 193 -2 1 1069 316 243 3 21 chr11 63569646 63569726 -58274130 - ID4_ SINE ID -74 78 1 1 1070 369 294 25 18 chr11 63570933 63571096 -58272760 - MARNA DNA Mariner -255 331 168 1 1070 21 0 0 0 chr11 63572769 63572790 -58271066 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 259 315 11 11 chr11 63572911 63573001 -58270855 + CT-rich Low_complexity Low_complexity 4 93 0 1 1070 312 224 163 57 chr11 63573005 63573128 -58270728 - B1F SINE Alu -9 140 5 1 1070 269 286 39 13 chr11 63573277 63573355 -58270501 + PB1D10 SINE Alu 24 103 -14 1 1070 207 100 0 0 chr11 63573363 63573393 -58270463 + (TAG)n Simple_repeat Simple_repeat 3 32 0 1 1070 201 184 0 26 chr11 63573486 63573525 -58270331 + GA-rich Low_complexity Low_complexity 1 38 0 1 1070 237 321 11 35 chr11 63573589 63573676 -58270180 + B4A SINE B4 4 88 -204 1 1070 1181 286 109 14 chr11 63573791 63574223 -58269633 - Lx8 LINE L1 -219 7254 6782 1 1070 818 284 140 27 chr11 63574486 63575008 -58268848 + L1M4 LINE L1 3600 4180 -1966 1 1070 908 297 31 12 chr11 63575155 63575479 -58268377 + RMER15 LTR ERVL 246 575 0 1 1070 315 290 149 29 chr11 63575558 63575867 -58267989 + L1M4 LINE L1 4250 4595 -1551 1 1070 1119 214 138 65 chr11 63575880 63576249 -58267607 + MTD LTR MaLR 9 404 -15 1 1070 825 280 92 8 chr11 63576261 63576665 -58267191 + L1M4 LINE L1 4610 5047 -1099 1 1070 358 294 143 63 chr11 63576666 63577004 -58266852 + MLT1A0 LTR MaLR 1 365 0 1 1070 565 224 98 62 chr11 63577011 63577427 -58266429 + L1M4 LINE L1 5057 5486 -694 1 1070 279 319 0 0 chr11 63577432 63577504 -58266352 - Lx8 LINE L1 -774 6699 6628 1 1070 1140 310 78 11 chr11 63577508 63577942 -58265914 + Lx8 LINE L1 6830 7292 -181 1 1070 294 29 0 0 chr11 63577949 63577984 -58265872 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1070 423 52 0 0 chr11 63577984 63578041 -58265815 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1070 1000 284 124 12 chr11 63578205 63578814 -58265042 + L1MB8 LINE L1 5472 6162 -16 1 1070 264 59 0 0 chr11 63579250 63579284 -58264572 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1 1070 702 204 7 0 chr11 63579293 63579430 -58264426 - B1_Mm SINE Alu 0 147 10 1 1070 244 319 70 19 chr11 63579338 63579455 -58264401 - B4 SINE B4 -99 193 71 1 1070 362 307 82 55 chr11 63579627 63579920 -58263936 + L1M5 LINE L1 4414 4714 -1432 1 1070 1030 137 147 0 chr11 63580027 63580224 -58263632 + MTC LTR MaLR 1 226 -195 1 1070 2623 151 70 50 chr11 63580222 63580821 -58263035 + MTD-int LTR MaLR 29 639 -619 1 1070 207 310 0 0 chr11 63581323 63581381 -58262475 + L2b LINE L2 3317 3374 -1 1 1070 284 267 26 13 chr11 63582117 63582193 -58261663 + MTD-int LTR MaLR 1177 1253 -5 1 1070 1581 196 48 34 chr11 63582199 63582557 -58261299 + MTD LTR MaLR 1 363 -56 1 1070 631 244 120 39 chr11 63582557 63582791 -58261065 - MTD LTR MaLR 0 419 167 1 1070 369 203 0 13 chr11 63582806 63582881 -58260975 - MTD LTR MaLR -328 91 18 1 1070 1267 221 62 39 chr11 63582880 63583238 -58260618 + ORR1C2 LTR MaLR 19 384 0 1 1070 726 237 15 35 chr11 63583293 63583490 -58260366 + B3A SINE B2 6 198 0 1 1070 1323 242 26 62 chr11 63583602 63583954 -58259902 + Lx6 LINE L1 7095 7433 -27 1 1070 1432 202 2 129 chr11 63583959 63584369 -58259487 + ORR1C1 LTR MaLR 16 373 -5 1 1070 315 0 0 0 chr11 63584452 63584487 -58259369 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1070 316 283 167 66 chr11 63584530 63584878 -58258978 - MER34A LTR ERV1 -50 492 110 1 1070 834 247 83 63 chr11 63584905 63585268 -58258588 + RLTR14 LTR ERV1 1 370 -12 1 1070 857 69 0 0 chr11 63585305 63585421 -58258435 - B1_Mus1 SINE Alu -1 147 32 1 1070 238 304 0 0 chr11 63585424 63585493 -58258363 - MER34A LTR ERV1 -462 80 12 1 1070 650 292 155 32 chr11 63585792 63586266 -58257590 - L1MB7 LINE L1 -58 6126 5595 1 1070 510 302 13 20 chr11 63586416 63586568 -58257288 - L1MB7 LINE L1 -1052 5094 4944 1 1070 335 229 33 138 chr11 63587372 63587524 -58256332 + ORR1E LTR MaLR 218 353 -6 1 1070 290 324 20 0 chr11 63587532 63587634 -58256222 - RMER15 LTR ERVL -108 467 364 1 1070 270 0 0 0 chr11 63588450 63588480 -58255376 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1070 312 304 0 22 chr11 63588742 63588867 -58254989 + ID4_ SINE ID 2 124 -28 1 1070 25 0 0 0 chr11 63589780 63589805 -58254051 + AT_rich Low_complexity Low_complexity 1 25 0 1 1070 193 250 55 14 chr11 63590238 63590311 -58253545 - MER5A DNA MER1_type -51 138 63 1 1070 319 340 124 51 chr11 63590335 63590592 -58253264 + MLT1A0 LTR MaLR 10 285 -80 1 1070 201 283 0 0 chr11 63591044 63591090 -58252766 - MER5A DNA MER1_type -139 50 5 1 1070 445 55 44 11 chr11 63591232 63591323 -58252533 + (CAAA)n Simple_repeat Simple_repeat 2 95 0 1 1070 208 309 213 8 chr11 63592254 63592381 -58251475 + L2a LINE L2 3274 3426 0 1 1070 418 358 113 37 chr11 63592770 63593391 -58250465 + HAL1 LINE L1 1009 1676 -831 1 1070 731 332 131 29 chr11 63594437 63594886 -58248970 + MLT1F LTR MaLR 3 497 -51 1 1070 2170 100 16 3 chr11 63594934 63595244 -58248612 + Lx LINE L1 6337 6650 -4 1 1070 315 19 38 19 chr11 63596471 63596524 -58247332 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1070 1570 152 52 178 chr11 63596699 63597138 -58246718 + ORR1C2 LTR MaLR 1 384 0 1 1070 223 316 25 12 chr11 63598290 63598370 -58245486 + MER91A DNA Tip100 113 193 -3 1 1070 25 0 0 0 chr11 63599775 63599800 -58244056 + AT_rich Low_complexity Low_complexity 1 25 0 1 1070 710 137 88 44 chr11 63599828 63599965 -58243891 + B1_Mur2 SINE Alu 1 143 -6 1 1070 351 0 0 0 chr11 63600020 63600059 -58243797 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1070 476 271 83 94 chr11 63600194 63600471 -58243385 - ORR1E LTR MaLR -6 353 80 1 1070 303 249 80 28 chr11 63601946 63602090 -58241766 + MIR SINE MIR 33 182 -80 1 1070 234 259 42 78 chr11 63602148 63602290 -58241566 - YREP_Mm Unknown Unknown -1471 341 205 1 1070 557 258 0 32 chr11 63602177 63602301 -58241555 + ID_B1 SINE B4 82 201 -23 1 1070 345 286 0 67 chr11 63602342 63602462 -58241394 + PB1D10 SINE Alu 1 112 -5 1 1070 375 241 106 9 chr11 63604202 63604315 -58239541 + B1F SINE Alu 3 126 -23 1 1070 271 233 58 11 chr11 63605974 63606061 -58237795 + MLT2C2 LTR ERVL 184 274 -190 1 1070 258 254 151 42 chr11 63606369 63606488 -58237368 + MIR SINE MIR 97 228 -34 1 1070 491 0 17 0 chr11 63606603 63606662 -58237194 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1070 581 249 59 36 chr11 63606817 63607038 -58236818 - MLT2C2 LTR ERVL -238 226 1 1 1070 233 341 30 0 chr11 63608149 63608284 -58235572 + HAL1 LINE L1 1603 1741 -766 1 1070 459 0 0 0 chr11 63608592 63608643 -58235213 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1070 24 53 0 0 chr11 63609228 63609266 -58234590 + AT_rich Low_complexity Low_complexity 1 38 0 1 1070 315 85 0 0 chr11 63609413 63609460 -58234396 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1 1070 414 264 30 197 chr11 63610061 63610175 -58233681 + B4 SINE B4 2 82 -210 1 1070 239 245 61 70 chr11 63610175 63610289 -58233567 + PB1D9 SINE Alu 1 113 -7 1 1070 360 0 0 0 chr11 63610426 63610466 -58233390 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1070 375 236 36 73 chr11 63610847 63610984 -58232872 + L1_Mur3 LINE L1 1501 1632 -4248 1 1070 1651 191 82 14 chr11 63611018 63611385 -58232471 + MTC LTR MaLR 16 407 -14 1 1070 1489 293 62 72 chr11 63611416 63611911 -58231945 + L1_Mur3 LINE L1 1664 2124 -3756 1 1070 487 0 0 31 chr11 63611911 63611976 -58231880 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 1070 1489 293 62 72 chr11 63611976 63612806 -58231050 + L1_Mur3 LINE L1 2125 2975 -2905 1 1070 22 0 0 0 chr11 63612810 63612832 -58231024 + AT_rich Low_complexity Low_complexity 1 22 0 1 1070 39878 40 9 5 chr11 63612844 63619160 -58224696 - L1Md_T LINE L1 0 6582 304 1 1070 2427 276 98 37 chr11 63619159 63620469 -58223387 + L1_Mur3 LINE L1 2967 4357 -1523 1 1070 1944 286 92 16 chr11 63620503 63621168 -58222688 - Lx8 LINE L1 -495 6978 6264 1 1070 314 309 0 20 chr11 63621911 63622010 -58221846 - PB1D7 SINE Alu -23 97 1 1 1070 777 279 105 64 chr11 63622231 63623179 -58220677 - Lx8 LINE L1 -278 6022 4976 1 1070 1192 68 0 0 chr11 63623485 63623631 -58220225 - B1_Mus1 SINE Alu -1 147 2 1 1070 560 264 284 0 chr11 63623900 63624171 -58219685 - Tigger7 DNA MER2_type -1884 607 260 1 1070 668 200 0 6 chr11 63624367 63624548 -58219308 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1070 279 0 0 0 chr11 63625429 63625460 -58218396 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1070 719 277 56 48 chr11 63626290 63626646 -58217210 - RLTR10D LTR ERVK 0 359 1 1 1070 1041 221 10 0 chr11 63626992 63627187 -58216669 + Lx8 LINE L1 6348 6544 -929 1 1070 237 305 96 30 chr11 63627188 63627323 -58216533 - MTE2a LTR MaLR -233 146 3 1 1070 576 152 0 0 chr11 63627326 63627425 -58216431 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1070 3233 61 2 0 chr11 63628054 63628449 -58215407 + MTA_Mm LTR MaLR 1 396 0 2 1070 547 243 79 42 chr11 63628720 63628909 -58214947 - B3A SINE B2 0 198 3 2 1070 291 327 19 0 chr11 63632595 63632699 -58211157 - MER57F LTR ERV1 -1 435 330 2 1070 542 268 123 48 chr11 63633148 63633399 -58210457 - MER57F LTR ERV1 -133 303 34 2 1070 368 97 16 0 chr11 63633411 63633473 -58210383 + (TTAG)n Simple_repeat Simple_repeat 4 66 0 2 1070 288 330 23 0 chr11 63633474 63633562 -58210294 - RSINE1 SINE B4 -23 142 53 2 1070 312 99 325 26 chr11 63633827 63633941 -58209915 - B2_Mm2 SINE B2 -1 194 47 2 1070 806 137 15 0 chr11 63633972 63634103 -58209753 - B2_Mm2 SINE B2 -62 133 1 2 1070 2936 125 24 32 chr11 63634107 63634119 -58209737 - L1_Mur2 LINE L1 -1527 4350 4342 2 1070 1341 86 6 0 chr11 63634119 63634294 -58209562 - B2_Mm1a SINE B2 -16 177 2 2 1070 2936 125 24 32 chr11 63634294 63634786 -58209070 - L1_Mur2 LINE L1 -1536 4341 3850 2 1070 7639 87 24 7 chr11 63634792 63635842 -58208014 + Lx LINE L1 5587 6654 0 2 1070 530 15 0 15 chr11 63635969 63636037 -58207819 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1070 245 363 54 27 chr11 63637059 63637243 -58206613 - L2 LINE L2 -601 2818 2630 2 1070 1441 192 77 30 chr11 63637489 63637855 -58206001 + RMER19C LTR ERVK 196 578 -33 2 1070 773 245 162 8 chr11 63637880 63638127 -58205729 + B4A SINE B4 2 286 -6 2 1070 219 233 0 0 chr11 63638132 63638175 -58205681 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1070 1329 73 0 0 chr11 63638184 63638362 -58205494 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2 1070 1148 78 0 0 chr11 63638536 63638678 -58205178 + B1_Mus2 SINE Alu 1 142 -5 2 1070 299 318 117 49 chr11 63638841 63639165 -58204691 + L1MC LINE L1 4547 4892 -1254 2 1070 282 56 0 0 chr11 63639165 63639201 -58204655 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 1070 403 250 18 9 chr11 63639303 63639416 -58204440 - PB1D7 SINE Alu -1 119 6 2 1070 1276 224 173 6 chr11 63639673 63640019 -58203837 - MTD LTR MaLR 0 419 14 2 1070 261 0 0 0 chr11 63640019 63640048 -58203808 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1070 1276 224 173 6 chr11 63640048 63640060 -58203796 - MTD LTR MaLR -406 13 2 2 1070 257 226 0 0 chr11 63640495 63640557 -58203299 + (CCA)n Simple_repeat Simple_repeat 3 64 0 2 1070 283 156 0 0 chr11 63640598 63640643 -58203213 - PB1D7 SINE Alu -58 62 18 2 1070 1981 174 115 14 chr11 63642313 63642740 -58201116 + RMER1B Other Other 594 1063 -3 2 1070 186 133 0 0 chr11 63642757 63642787 -58201069 + (CAT)n Simple_repeat Simple_repeat 3 32 0 2 1070 476 211 158 0 chr11 63643057 63643171 -58200685 - B3 SINE B2 -6 210 79 2 1070 596 212 115 115 chr11 63643185 63643220 -58200636 + MTEa LTR MaLR 161 195 -184 2 1070 621 40 0 0 chr11 63643220 63643296 -58200560 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 1070 596 212 115 115 chr11 63643296 63643478 -58200378 + MTEa LTR MaLR 196 377 -2 2 1070 24 0 0 0 chr11 63644177 63644201 -58199655 + AT_rich Low_complexity Low_complexity 1 24 0 2 1070 210 122 24 24 chr11 63644800 63644842 -58199014 + A-rich Low_complexity Low_complexity 4 45 0 2 1070 360 43 0 0 chr11 63644929 63644975 -58198881 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 2 1070 431 293 66 47 chr11 63645184 63645490 -58198366 + L1MB8 LINE L1 5136 5482 -692 2 1070 223 129 0 0 chr11 63645491 63645522 -58198334 + (GGA)n Simple_repeat Simple_repeat 2 32 0 2 1070 317 222 0 18 chr11 63645534 63645644 -58198212 + GA-rich Low_complexity Low_complexity 3 110 0 2 1070 643 287 117 8 chr11 63645864 63646113 -58197743 + B4A SINE B4 4 279 -13 2 1070 249 119 0 0 chr11 63646127 63646169 -58197687 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1070 554 310 20 18 chr11 63646457 63646644 -58197212 - B3A SINE B2 -10 206 17 2 1070 457 239 134 16 chr11 63646650 63646837 -58197019 + L1MB8 LINE L1 5684 5892 -286 2 1070 764 259 40 11 chr11 63646970 63647146 -58196710 - B3A SINE B2 -16 182 2 2 1070 663 256 142 20 chr11 63647151 63647398 -58196458 - MER82 DNA MER2_type -261 392 116 2 1070 225 182 0 0 chr11 63648600 63648655 -58195201 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 1070 562 242 5 104 chr11 63649022 63649234 -58194622 - B3A SINE B2 -7 191 1 2 1070 1387 243 28 25 chr11 63649428 63649791 -58194065 + MTEb LTR MaLR 3 366 -13 2 1070 529 354 64 11 chr11 63649881 63650321 -58193535 + L1MB3 LINE L1 5683 6145 -38 2 1070 337 235 61 10 chr11 63650388 63650487 -58193369 + PB1D7 SINE Alu 13 116 -4 2 1070 381 307 148 95 chr11 63651645 63652077 -58191779 - MLT2B3 LTR ERVL -9 545 91 2 1070 249 296 47 0 chr11 63652140 63652257 -58191599 + Charlie10a DNA MER1_type 149 271 -9 2 1070 696 150 0 0 chr11 63653219 63653346 -58190510 + (TG)n Simple_repeat Simple_repeat 1 127 0 2 1070 231 241 0 35 chr11 63653414 63653500 -58190356 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 2 1070 701 199 52 0 chr11 63653500 63653636 -58190220 - B1_Mus1 SINE Alu -1 147 5 2 1070 689 266 72 3 chr11 63653638 63653820 -58190036 - B4A SINE B4 -63 229 36 2 1070 756 263 33 82 chr11 63653920 63654133 -58189723 - B4A SINE B4 0 292 91 2 1070 2541 86 3 0 chr11 63654133 63654459 -58189397 - ORR1A2 LTR MaLR 0 327 1 2 1070 756 263 33 82 chr11 63654459 63654551 -58189305 - B4A SINE B4 -202 90 2 2 1070 3489 28 2 2 chr11 63655163 63655559 -58188297 + MTA_Mm LTR MaLR 1 396 0 2 1070 638 252 0 33 chr11 63656717 63656869 -58186987 - ID_B1 SINE B4 -5 219 73 2 1070 186 43 0 0 chr11 63657132 63657155 -58186701 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1070 420 321 13 39 chr11 63658446 63658650 -58185206 + L1M3 LINE L1 5657 5853 -459 2 1070 203 179 0 0 chr11 63659574 63659613 -58184243 + T-rich Low_complexity Low_complexity 1 39 0 2 1070 305 177 0 12 chr11 63659697 63659777 -58184079 + CT-rich Low_complexity Low_complexity 2 80 0 2 1070 273 100 0 0 chr11 63660922 63660962 -58182894 + B3 SINE B2 1 40 -176 2 1070 326 77 0 0 chr11 63660963 63661002 -58182854 + L1Md_F2 LINE L1 5548 5586 -297 2 1070 7641 67 18 3 chr11 63661002 63661972 -58181884 + L1Md_F2 LINE L1 5587 6570 -12 2 1070 765 266 5 0 chr11 63661974 63662158 -58181698 + B3 SINE B2 27 211 -5 2 1070 236 163 23 0 chr11 63662216 63662259 -58181597 + L1_Mm LINE L1 5751 5794 -89 2 1070 517 260 13 26 chr11 63662272 63662428 -58181428 + B3A SINE B2 63 214 -2 2 1070 855 113 0 8 chr11 63663061 63663195 -58180661 + B1_Mus2 SINE Alu 15 147 0 2 1070 549 0 0 0 chr11 63663221 63663282 -58180574 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 1070 595 307 54 118 chr11 63664944 63665114 -58178742 + B3A SINE B2 1 162 -33 2 1070 279 54 0 0 chr11 63665114 63665151 -58178705 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1070 296 307 54 118 chr11 63665151 63665183 -58178673 + B2_Mm2 SINE B2 163 190 -5 2 1070 294 98 0 0 chr11 63665255 63665306 -58178550 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1070 344 264 20 73 chr11 63665670 63665821 -58178035 - HAL1-3A_ME LINE L1 -740 2118 1976 2 1070 278 281 32 43 chr11 63666079 63666090 -58177766 + B4A SINE B4 76 85 -207 2 1070 416 242 0 42 chr11 63666090 63666185 -58177671 + PB1D10 SINE Alu 2 92 -25 2 1070 803 64 9 0 chr11 63667052 63667162 -58176694 + (GGGA)n Simple_repeat Simple_repeat 2 112 0 2 1070 338 267 111 24 chr11 63667590 63667797 -58176059 - L1M7 LINE L1 -4819 1399 1175 2 1070 248 200 0 16 chr11 63667884 63667945 -58175911 + CT-rich Low_complexity Low_complexity 2 61 0 2 1070 565 171 177 8 chr11 63668354 63668478 -58175378 + B1_Mus2 SINE Alu 3 147 0 2 1070 415 323 85 88 chr11 63668961 63669213 -58174643 - ORR1E LTR MaLR -2 357 105 2 1070 3197 69 2 10 chr11 63669213 63669623 -58174233 - MTB_Mm LTR MaLR 0 407 1 2 1070 6049 102 72 84 chr11 63669623 63670735 -58173121 - MTB_Mm-int LTR MaLR 0 1098 1 2 1070 3039 64 33 13 chr11 63670735 63671132 -58172724 - MTB_Mm LTR MaLR 0 407 3 2 1070 415 323 85 88 chr11 63671132 63671230 -58172626 - ORR1E LTR MaLR -255 104 8 2 1070 2371 134 20 29 chr11 63671575 63672021 -58171835 - RMER10A LTR ERVL 0 442 1 2 1070 22 0 0 0 chr11 63672929 63672951 -58170905 + AT_rich Low_complexity Low_complexity 1 22 0 2 1070 855 320 7 0 chr11 63673257 63673557 -58170299 + L1MB3 LINE L1 5795 6096 -87 2 1070 273 256 35 0 chr11 63673573 63673659 -58170197 - ORR1D2 LTR MaLR -281 89 1 2 1070 209 40 0 0 chr11 63673702 63673727 -58170129 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2 1070 264 91 0 0 chr11 63673727 63673771 -58170085 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1070 596 299 53 11 chr11 63673773 63673962 -58169894 + B3A SINE B2 2 198 0 2 1070 681 186 142 46 chr11 63673969 63674166 -58169690 + B3 SINE B2 1 216 0 2 1070 978 34 0 0 chr11 63676188 63676306 -58167550 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 2 1070 933 116 0 0 chr11 63676576 63676722 -58167134 + (TTTC)n Simple_repeat Simple_repeat 4 149 0 2 1070 617 219 0 15 chr11 63676809 63676939 -58166917 - RSINE1 SINE B4 -36 129 2 2 1070 230 254 17 0 chr11 63677156 63677215 -58166641 + L1M5 LINE L1 5575 5634 -490 2 1070 1692 166 149 23 chr11 63677347 63677735 -58166121 - RMER10A LTR ERVL -5 437 1 2 1070 255 206 247 11 chr11 63678802 63678895 -58164961 - PB1D10 SINE Alu 0 117 3 2 1070 282 314 77 0 chr11 63679013 63679182 -58164674 - L1MA4 LINE L1 -118 6182 6001 2 1070 419 308 53 27 chr11 63679437 63679624 -58164232 - L1MA7 LINE L1 -430 5861 5670 2 1070 1218 142 26 5 chr11 63680153 63680344 -58163512 + B2_Mm2 SINE B2 1 195 0 2 1070 714 186 0 0 chr11 63680344 63680484 -58163372 + GA-rich Low_complexity Low_complexity 1 140 0 2 1070 1125 126 28 17 chr11 63680795 63680972 -58162884 + URR1A DNA MER1_type 48 226 0 2 1070 376 161 261 26 chr11 63680976 63681021 -58162835 + Lx9 LINE L1 7441 7485 -159 2 1070 297 0 0 0 chr11 63681021 63681054 -58162802 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1070 376 161 261 26 chr11 63681054 63681123 -58162733 + Lx9 LINE L1 7486 7582 -62 2 1070 2151 101 3 81 chr11 63681123 63681406 -58162450 + ORR1A2 LTR MaLR 3 286 -41 3 1070 1210 68 0 0 chr11 63681406 63681553 -58162303 + B1_Mus1 SINE Alu 2 148 0 3 1070 2151 101 3 81 chr11 63681553 63681613 -58162243 + ORR1A2 LTR MaLR 287 319 -8 3 1070 189 74 0 0 chr11 63681718 63681745 -58162111 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 3 1070 1050 68 0 0 chr11 63681767 63681900 -58161956 - B1_Mm SINE Alu -13 134 2 3 1070 186 133 0 0 chr11 63683376 63683406 -58160450 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1070 526 223 135 0 chr11 63683414 63683562 -58160294 + B3 SINE B2 49 216 0 3 1070 372 207 112 22 chr11 63683674 63683763 -58160093 - PB1D10 SINE Alu 0 117 21 3 1070 436 288 143 50 chr11 63683763 63683924 -58159932 + ORR1D2 LTR MaLR 1 176 -194 3 1070 402 115 0 0 chr11 63683924 63683985 -58159871 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 1070 739 211 108 6 chr11 63684012 63684188 -58159668 + ORR1D2 LTR MaLR 176 369 -1 3 1070 235 122 0 39 chr11 63685766 63685817 -58158039 + CT-rich Low_complexity Low_complexity 2 50 0 3 1070 323 247 34 37 chr11 63685859 63686007 -58157849 - L1MB3 LINE L1 -45 6138 5897 3 1070 1042 128 0 13 chr11 63686008 63686158 -58157698 - B1_Mur2 SINE Alu -1 148 1 3 1070 437 198 171 46 chr11 63686508 63686683 -58157173 + Lx8 LINE L1 7276 7472 -1 3 1070 312 27 0 0 chr11 63686712 63686749 -58157107 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1070 227 31 31 0 chr11 63687388 63687420 -58156436 + (TATG)n Simple_repeat Simple_repeat 2 34 0 3 1070 853 242 11 0 chr11 63687427 63687605 -58156251 + B3A SINE B2 1 180 -18 3 1070 574 312 122 42 chr11 63688201 63688579 -58155277 + L1ME4a LINE L1 5702 6109 -15 3 1070 342 0 0 0 chr11 63689822 63689860 -58153996 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1070 717 97 0 0 chr11 63689858 63689961 -58153895 + (TTC)n Simple_repeat Simple_repeat 3 105 0 3 1070 613 277 14 0 chr11 63689964 63690105 -58153751 - B1_Mur2 SINE Alu -5 144 2 3 1070 297 0 0 0 chr11 63690219 63690252 -58153604 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1070 450 303 0 78 chr11 63690265 63690419 -58153437 - B3A SINE B2 -56 142 1 3 1070 235 362 91 41 chr11 63690436 63690448 -58153408 - PB1 SINE Alu 0 127 116 3 1070 846 184 0 41 chr11 63690448 63690595 -58153261 - B1_Mur2 SINE Alu -6 143 3 3 1070 334 362 91 41 chr11 63690595 63690703 -58153153 - B1F1 SINE Alu -12 115 1 3 1070 1277 40 0 0 chr11 63691071 63691219 -58152637 + B1_Mus1 SINE Alu 1 148 0 3 1070 255 284 37 12 chr11 63691265 63691347 -58152509 + MTEb LTR MaLR 293 376 -3 3 1070 398 224 33 49 chr11 63693483 63693605 -58150251 + MLT1C LTR MaLR 5 124 -343 3 1070 600 197 34 0 chr11 63693744 63693861 -58149995 - B1F SINE Alu -8 141 21 3 1070 502 307 7 13 chr11 63693861 63693899 -58149957 - ID_B1 SINE B4 -8 216 63 3 1070 288 310 0 0 chr11 63693869 63693940 -58149916 - PB1 SINE Alu -39 88 18 3 1070 755 325 110 69 chr11 63694384 63694831 -58149025 + MLT2B3 LTR ERVL 89 553 -1 3 1070 1064 262 85 21 chr11 63696059 63696387 -58147469 + ORR1E LTR MaLR 3 351 -8 3 1070 333 312 42 0 chr11 63696431 63696527 -58147329 - MER5A DNA MER1_type -87 102 3 3 1070 327 233 209 0 chr11 63697566 63697652 -58146204 + RSINE1 SINE B4 62 165 0 3 1070 418 221 22 44 chr11 63698831 63698921 -58144935 + RSINE1 SINE B4 1 88 -77 3 1070 218 105 0 26 chr11 63698937 63698976 -58144880 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1070 525 187 58 16 chr11 63699029 63699152 -58144704 + PB1D7 SINE Alu 22 145 -5 3 1070 22 35 0 0 chr11 63699224 63699253 -58144603 + AT_rich Low_complexity Low_complexity 1 29 0 3 1070 25 0 0 0 chr11 63700049 63700074 -58143782 + AT_rich Low_complexity Low_complexity 1 25 0 3 1070 32 0 0 0 chr11 63700524 63700556 -58143300 + AT_rich Low_complexity Low_complexity 1 32 0 3 133 304 203 107 13 chr11 63700964 63701039 -58142817 + ID4 SINE ID 2 83 0 3 1071 26 0 0 0 chr11 63702542 63702568 -58141288 + AT_rich Low_complexity Low_complexity 1 26 0 3 1071 290 294 82 27 chr11 63704480 63704627 -58139229 + MIRb SINE MIR 41 195 -73 3 1071 209 183 213 16 chr11 63704743 63704804 -58139052 + MIR SINE MIR 116 188 -74 3 1071 201 396 48 20 chr11 63705598 63705745 -58138111 + MIR SINE MIR 23 173 -89 3 1071 295 206 31 31 chr11 63706439 63706504 -58137352 - MER31A LTR ERV1 -416 69 5 3 1071 234 0 0 0 chr11 63706669 63706695 -58137161 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1071 538 218 99 41 chr11 63706896 63707068 -58136788 - MIRc SINE MIR -4 264 83 3 1071 303 316 88 44 chr11 63707862 63708021 -58135835 - MER5B DNA MER1_type -12 166 1 3 1071 328 265 22 12 chr11 63708128 63708234 -58135622 + B1F SINE Alu 40 149 0 3 1071 686 262 12 42 chr11 63708247 63708414 -58135442 + B3A SINE B2 1 162 -36 3 1071 375 195 38 38 chr11 63708965 63709045 -58134811 + B1F2 SINE Alu 1 80 -69 3 1071 558 43 0 0 chr11 63709061 63709130 -58134726 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1071 338 240 52 10 chr11 63709258 63709355 -58134501 - PB1D10 SINE Alu 0 117 17 3 1071 1279 34 0 0 chr11 63710071 63710217 -58133639 + B1_Mm SINE Alu 2 147 0 3 1071 302 278 50 20 chr11 63711036 63711135 -58132721 - MTEb LTR MaLR -5 374 273 3 1071 194 128 26 0 chr11 63711927 63711966 -58131890 + CT-rich Low_complexity Low_complexity 2 41 0 3 1071 387 0 0 0 chr11 63712624 63712667 -58131189 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1071 514 314 39 0 chr11 63712892 63713045 -58130811 + RSINE1 SINE B4 3 161 -4 3 1071 189 0 0 0 chr11 63713047 63713068 -58130788 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 1071 486 49 0 0 chr11 63713427 63713488 -58130368 + (TCC)n Simple_repeat Simple_repeat 1 61 0 3 1071 22 0 0 0 chr11 63714045 63714067 -58129789 + AT_rich Low_complexity Low_complexity 1 22 0 3 1071 605 234 93 39 chr11 63714754 63714959 -58128897 - B3 SINE B2 0 216 1 3 1071 793 299 144 38 chr11 63715734 63716131 -58127725 + RMER5 LTR ERV1 15 453 -81 3 1071 268 154 0 44 chr11 63716168 63716236 -58127620 + CT-rich Low_complexity Low_complexity 4 68 0 3 1071 247 322 100 0 chr11 63716259 63716349 -58127507 - PB1D10 SINE Alu -14 103 5 3 1071 229 265 0 0 chr11 63717375 63717424 -58126432 + CT-rich Low_complexity Low_complexity 3 51 0 3 1071 324 0 0 0 chr11 63717472 63717508 -58126348 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1071 245 29 29 0 chr11 63717671 63717705 -58126151 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 1071 279 0 0 0 chr11 63717894 63717925 -58125931 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1071 392 304 8 39 chr11 63718742 63718872 -58124984 - MTEb LTR MaLR -4 375 250 3 1071 316 238 147 19 chr11 63720921 63721038 -58122818 - PB1D10 SINE Alu -17 133 6 3 1071 231 265 14 56 chr11 63721078 63721150 -58122706 + ID4_ SINE ID 2 70 -13 3 1071 981 26 0 0 chr11 63721197 63721313 -58122543 + (GAAA)n Simple_repeat Simple_repeat 4 119 0 3 1071 296 287 54 108 chr11 63721803 63721932 -58121924 - MTEa LTR MaLR -2 377 256 3 1071 496 296 84 34 chr11 63722032 63722210 -58121646 - ORR1E LTR MaLR -12 347 161 3 1071 1174 99 72 0 chr11 63722741 63722893 -58120963 + B2_Mm2 SINE B2 2 153 -42 3 1071 393 22 0 0 chr11 63722893 63722939 -58120917 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1071 1174 99 72 0 chr11 63722939 63722967 -58120889 + B2_Mm2 SINE B2 154 193 -2 3 1071 399 89 0 0 chr11 63724996 63725052 -58118804 + (TCC)n Simple_repeat Simple_repeat 3 58 0 3 1071 279 0 0 0 chr11 63726006 63726037 -58117819 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1071 212 327 58 19 chr11 63727332 63727435 -58116421 + PB1D10 SINE Alu 3 109 -8 3 1071 448 229 94 0 chr11 63728681 63728838 -58115018 - L1MA6 LINE L1 -50 6247 6068 3 1071 230 81 27 0 chr11 63729689 63729726 -58114130 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1071 593 266 119 41 chr11 63731194 63731437 -58112419 + MIR SINE MIR 1 262 0 3 1071 223 121 0 33 chr11 63731441 63731501 -58112355 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1071 216 109 64 21 chr11 63731509 63731556 -58112300 + C-rich Low_complexity Low_complexity 2 50 0 3 1071 216 0 0 0 chr11 63732068 63732092 -58111764 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 3 1071 180 0 0 0 chr11 63733135 63733155 -58110701 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1071 186 71 0 0 chr11 63735305 63735333 -58108523 + (CGG)n Simple_repeat Simple_repeat 1 28 0 3 1071 297 75 0 0 chr11 63739943 63739983 -58103873 + (CAT)n Simple_repeat Simple_repeat 1 40 0 3 1071 744 150 7 29 chr11 63740208 63740345 -58103511 - B1_Mur2 SINE Alu 0 149 16 3 1071 268 252 62 88 chr11 63740661 63740774 -58103082 + LTR16A LTR ERVL 243 352 -99 3 1071 834 222 108 0 chr11 63741098 63741283 -58102573 - B3 SINE B2 -10 206 2 3 1071 620 219 29 23 chr11 63741378 63741551 -58102305 - L1MC2 LINE L1 -141 6203 6030 3 1071 306 0 0 0 chr11 63741920 63741954 -58101902 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 3 1071 587 290 0 0 chr11 63741960 63742098 -58101758 - RSINE1 SINE B4 -11 154 17 3 1071 672 245 115 0 chr11 63742332 63742524 -58101332 - B3 SINE B2 0 216 3 3 1071 396 71 295 74 chr11 63742595 63742717 -58101139 - B2_Mm2 SINE B2 0 195 47 3 1071 1202 108 11 0 chr11 63742768 63742944 -58100912 - B2_Mm1t SINE B2 -14 179 2 3 1071 246 266 207 82 chr11 63743598 63743733 -58100123 + MER20 DNA MER1_type 8 159 -60 3 1071 1834 99 40 17 chr11 63743890 63744188 -58099668 - ORR1A1 LTR MaLR 0 346 42 4 1071 495 142 0 0 chr11 63744188 63744286 -58099570 - ORR1A2 LTR MaLR -248 98 1 4 1071 505 269 24 30 chr11 63744633 63744839 -58099017 - L1MB3 LINE L1 -187 5991 5776 4 1071 642 274 44 18 chr11 63744946 63745221 -58098635 - L1MB3 LINE L1 -414 5757 5476 4 1071 233 57 0 28 chr11 63745221 63745257 -58098599 + (TTCTCC)n Simple_repeat Simple_repeat 3 37 0 4 1071 357 230 14 0 chr11 63745360 63745434 -58098422 + PB1D10 SINE Alu 31 105 -12 4 1071 405 0 0 0 chr11 63745706 63745751 -58098105 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1071 216 86 0 0 chr11 63745752 63745787 -58098069 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1071 1307 79 26 10 chr11 63746133 63746325 -58097531 - B2_Mm2 SINE B2 0 195 1 4 1071 360 0 0 0 chr11 63746422 63746462 -58097394 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1071 805 214 55 5 chr11 63746553 63746755 -58097101 + B3 SINE B2 1 212 -4 4 1071 245 75 0 24 chr11 63747298 63747339 -58096517 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 1071 544 256 195 24 chr11 63747355 63747600 -58096256 + B4 SINE B4 1 287 -5 4 1071 198 0 0 0 chr11 63747623 63747645 -58096211 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1071 759 173 11 6 chr11 63748759 63748933 -58094923 + CT-rich Low_complexity Low_complexity 3 177 0 4 1071 428 280 92 75 chr11 63749639 63749944 -58093912 + L1MB4 LINE L1 79 388 -6219 4 1071 366 285 52 26 chr11 63750292 63750447 -58093409 + L1MB4 LINE L1 622 780 -5827 4 1071 390 294 90 98 chr11 63750512 63750986 -58092870 + L1MB4 LINE L1 931 1390 -5217 4 1071 657 139 0 0 chr11 63750987 63751095 -58092761 + (CACCAT)n Simple_repeat Simple_repeat 1 108 0 4 1071 366 231 0 0 chr11 63751202 63751267 -58092589 - B1F1 SINE Alu -83 66 2 4 1071 565 192 15 0 chr11 63751299 63751429 -58092427 + GA-rich Low_complexity Low_complexity 1 132 0 4 1071 257 226 119 25 chr11 63751437 63751596 -58092260 + L1MB4 LINE L1 1494 1667 -4978 4 1071 838 189 120 36 chr11 63751652 63751844 -58092012 + B3 SINE B2 2 209 -7 4 1071 319 313 99 47 chr11 63751940 63752131 -58091725 + L1M3 LINE L1 5485 5685 -495 4 1071 229 287 67 22 chr11 63753279 63753368 -58090488 + MLT1B LTR MaLR 291 383 -7 4 1071 432 0 0 0 chr11 63753657 63753705 -58090151 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1071 329 271 13 0 chr11 63754113 63754206 -58089650 - L1M2 LINE L1 -701 5590 5491 4 1071 439 155 10 20 chr11 63754376 63754475 -58089381 + CT-rich Low_complexity Low_complexity 2 99 0 4 1071 236 271 121 48 chr11 63754812 63754936 -58088920 + Tigger5 DNA MER2_type 36 168 -2238 4 1071 1301 60 16 47 chr11 63755021 63755214 -58088642 - B2_Mm2 SINE B2 -7 188 2 4 1071 381 320 9 52 chr11 63755215 63755417 -58088439 + L1M2 LINE L1 5647 5828 -343 4 1071 448 252 22 15 chr11 63755996 63756133 -58087723 + B1F SINE Alu 1 138 -11 4 1071 260 279 15 0 chr11 63756159 63756227 -58087629 + ID4_ SINE ID 4 72 -11 4 1071 649 43 21 0 chr11 63756246 63756339 -58087517 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 1071 261 0 0 0 chr11 63756349 63756378 -58087478 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1071 696 188 15 15 chr11 63756383 63756518 -58087338 - B1_Mur3 SINE Alu -14 135 1 4 1071 270 56 0 0 chr11 63756695 63756731 -58087125 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1071 295 311 0 26 chr11 63756854 63756930 -58086926 + RSINE1 SINE B4 91 164 -1 4 1071 339 242 0 0 chr11 63756941 63757040 -58086816 + (CA)n Simple_repeat Simple_repeat 1 99 0 4 1071 427 312 96 25 chr11 63757134 63757374 -58086482 + MER21B LTR ERV1 130 386 -477 4 1071 609 311 24 14 chr11 63757374 63757586 -58086270 + MTD LTR MaLR 1 214 -205 4 1071 250 216 25 63 chr11 63757590 63757669 -58086187 + L1MC4 LINE L1 215 290 -5925 4 1071 304 227 26 13 chr11 63757776 63757852 -58086004 - L1MC4a LINE L1 -1203 6679 6603 4 1071 333 129 0 0 chr11 63757855 63757925 -58085931 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1071 191 235 107 36 chr11 63758251 63758335 -58085521 - MIR3 SINE MIR -106 102 13 4 1071 465 92 0 0 chr11 63758644 63758720 -58085136 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 4 1071 1455 48 27 0 chr11 63758795 63758982 -58084874 + B2_Mm2 SINE B2 1 192 -3 4 1071 489 34 0 0 chr11 63759417 63759476 -58084380 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1071 248 164 15 0 chr11 63759476 63759543 -58084313 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1071 560 282 158 16 chr11 63759554 63759830 -58084026 - MLT2B4 LTR ERVL -64 492 76 4 1071 306 0 0 0 chr11 63759830 63759864 -58083992 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1071 560 256 171 0 chr11 63759864 63759919 -58083937 - MLT2B4 LTR ERVL -481 75 21 4 1071 282 293 0 0 chr11 63760320 63760395 -58083461 + ID4 SINE ID 3 77 -6 4 1071 712 367 118 29 chr11 63760562 63761047 -58082809 - MLT1K LTR MaLR -32 563 36 4 1071 302 258 43 11 chr11 63761206 63761300 -58082556 + MER20 DNA MER1_type 123 219 0 4 1071 783 115 0 0 chr11 63761412 63761560 -58082296 + (GA)n Simple_repeat Simple_repeat 2 149 0 4 1071 1700 207 82 18 chr11 63762039 63762428 -58081428 - MTD LTR MaLR -1 418 5 4 1071 292 297 39 19 chr11 63762456 63762559 -58081297 - MLT1A1 LTR MaLR -1 609 505 4 1071 621 186 9 0 chr11 63763091 63763204 -58080652 + ID_B1 SINE B4 105 218 -6 4 1071 235 339 23 30 chr11 63763204 63763222 -58080634 - YREP_Mm Unknown Unknown -1519 293 164 4 1071 903 221 18 60 chr11 63763260 63763477 -58080379 + B3 SINE B2 1 208 -8 4 1071 495 48 0 0 chr11 63763870 63763932 -58079924 + (CAG)n Simple_repeat Simple_repeat 1 62 0 4 1071 407 243 9 18 chr11 63763941 63764054 -58079802 + PB1D9 SINE Alu 2 113 -7 4 1071 723 196 0 0 chr11 63764057 63764195 -58079661 + B1_Mus1 SINE Alu 8 145 -3 4 1071 353 301 89 76 chr11 63764908 63765232 -58078624 - MLT1A1 LTR MaLR -32 376 1 4 1071 250 271 119 0 chr11 63765232 63765350 -58078506 - L2 LINE L2 -1110 2309 2178 4 1071 414 0 0 0 chr11 63765353 63765399 -58078457 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1071 657 282 97 66 chr11 63765491 63765779 -58078077 - MT2A LTR ERVL -109 424 128 4 1071 227 267 105 13 chr11 63765797 63765873 -58077983 - MTD LTR MaLR -325 94 12 4 1071 258 373 27 0 chr11 63767393 63767503 -58076353 + MLT1K LTR MaLR 459 571 -24 4 1071 227 171 53 0 chr11 63767860 63767936 -58075920 + C-rich Low_complexity Low_complexity 3 82 0 4 1071 352 291 52 0 chr11 63768070 63768204 -58075652 - L1M4 LINE L1 -713 5471 5331 4 1071 1128 90 89 11 chr11 63768241 63768420 -58075436 - B2_Mm2 SINE B2 0 195 3 4 1071 2031 166 85 100 chr11 63768426 63768967 -58074889 - RMER16 LTR ERVK 0 533 1 4 1071 285 29 0 0 chr11 63769828 63769862 -58073994 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 4 1071 223 317 0 111 chr11 63771252 63771369 -58072487 + PB1D10 SINE Alu 2 105 -12 4 1071 480 217 70 100 chr11 63773008 63773208 -58070648 + B2_Mm2 SINE B2 1 194 -1 4 1071 345 205 0 49 chr11 63773542 63773624 -58070232 - B4A SINE B4 -207 85 8 4 1071 461 68 0 13 chr11 63773799 63773874 -58069982 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1071 235 244 50 25 chr11 63773912 63773989 -58069867 - Tigger5 DNA MER2_type -2185 221 143 4 1071 2174 124 22 3 chr11 63773989 63774345 -58069511 - RLTR9A LTR ERVK -1 367 5 4 1071 316 353 17 0 chr11 63774392 63774511 -58069345 - Tigger5 DNA MER2_type -2284 122 2 4 1071 267 325 8 95 chr11 63775454 63775580 -58068276 + L1MA8 LINE L1 5815 5929 -362 4 1071 227 259 176 0 chr11 63775602 63775658 -58068198 + PB1D10 SINE Alu 10 109 -8 4 1071 243 0 0 0 chr11 63775658 63775687 -58068169 + ID_B1 SINE B4 188 216 -8 4 1071 198 0 0 0 chr11 63775697 63775719 -58068137 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 4 1071 23 0 0 0 chr11 63775823 63775846 -58068010 + AT_rich Low_complexity Low_complexity 1 23 0 4 1071 231 36 0 0 chr11 63777222 63777250 -58066606 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1071 240 35 0 0 chr11 63777364 63777393 -58066463 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1071 1047 252 107 9 chr11 63778164 63778409 -58065447 - MTD LTR MaLR 0 400 111 4 1071 213 39 0 0 chr11 63778409 63778435 -58065421 + (ATG)n Simple_repeat Simple_repeat 1 26 0 4 1071 1047 230 85 0 chr11 63778435 63778516 -58065340 - MTD LTR MaLR -292 127 32 4 1071 218 298 19 108 chr11 63779666 63779824 -58064032 - L2b LINE L2 -119 3256 3113 4 1071 566 226 20 33 chr11 63779870 63780021 -58063835 - B1F SINE Alu 0 149 1 4 1071 540 200 20 10 chr11 63781581 63781682 -58062174 + PB1D9 SINE Alu 5 106 -14 4 1071 267 226 0 0 chr11 63781855 63781908 -58061948 + L2a LINE L2 3374 3426 0 4 1071 243 0 0 0 chr11 63783852 63783879 -58059977 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1071 1157 68 0 0 chr11 63783881 63784027 -58059829 - B1_Mus2 SINE Alu 0 147 2 4 1071 239 267 10 91 chr11 63784248 63784347 -58059509 + L2c LINE L2 3266 3356 -31 4 1071 314 229 28 141 chr11 63784804 63784946 -58058910 + MER5A DNA MER1_type 14 139 -50 4 1071 521 237 122 0 chr11 63785265 63785421 -58058435 + MER3 DNA MER1_type 35 209 0 4 1071 313 246 16 0 chr11 63785969 63786030 -58057826 - HAL1-3A_ME LINE L1 -822 2036 1975 4 1071 222 37 0 0 chr11 63786034 63786061 -58057795 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1071 463 253 149 47 chr11 63786113 63786359 -58057497 - B4A SINE B4 0 292 3 4 1071 1626 208 94 6 chr11 63786847 63787209 -58056647 - MTD LTR MaLR 0 419 26 4 1071 201 74 0 0 chr11 63787497 63787524 -58056332 + (CAG)n Simple_repeat Simple_repeat 2 28 0 4 1071 526 253 38 51 chr11 63787700 63787937 -58055919 + RMER17C LTR ERVK 1 234 -176 4 1071 911 57 8 0 chr11 63787939 63788061 -58055795 + (TCC)n Simple_repeat Simple_repeat 1 123 0 4 1071 668 214 68 8 chr11 63788267 63788399 -58055457 - RSINE1 SINE B4 -3 162 23 5 1071 245 281 97 103 chr11 63788329 63788484 -58055372 + MLT1A0 LTR MaLR 170 323 -42 5 1071 199 299 72 0 chr11 63788501 63788598 -58055258 - MIR SINE MIR -79 183 80 5 1071 656 209 177 21 chr11 63792001 63792187 -58051669 - B3 SINE B2 0 216 2 5 1071 2629 142 89 8 chr11 63792333 63792817 -58051039 + Lx LINE L1 6127 6649 -5 5 1071 595 330 87 15 chr11 63792944 63793209 -58050647 + Charlie26a DNA MER1_type 28 311 -14 5 1071 321 26 0 0 chr11 63793765 63793803 -58050053 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 5 1071 216 395 0 52 chr11 63793997 63794133 -58049723 - B4A SINE B4 -78 214 86 5 1071 362 284 101 7 chr11 63794190 63794339 -58049517 + RSINE1 SINE B4 3 165 0 5 1071 277 221 44 0 chr11 63795115 63795183 -58048673 + MER5A DNA MER1_type 1 71 -118 5 1071 24 0 0 0 chr11 63795554 63795578 -58048278 + AT_rich Low_complexity Low_complexity 1 24 0 5 1071 375 78 0 0 chr11 63796183 63796234 -58047622 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1071 1709 16 0 5 chr11 63797474 63797667 -58046189 - B2_Mm1a SINE B2 -1 192 1 5 1071 1747 181 24 32 chr11 63798302 63798679 -58045177 - ORR1D1 LTR MaLR 0 374 1 5 1071 267 173 0 0 chr11 63801416 63801468 -58042388 + G-rich Low_complexity Low_complexity 1 52 0 5 1071 234 0 0 0 chr11 63803119 63803145 -58040711 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1071 740 264 0 19 chr11 63804839 63805001 -58038855 - RSINE1 SINE B4 -4 161 3 5 1071 767 193 20 7 chr11 63805196 63805342 -58038514 + MTD LTR MaLR 2 149 -270 5 1071 708 217 0 0 chr11 63805342 63805471 -58038385 + MTD LTR MaLR 291 419 0 5 1071 249 109 0 0 chr11 63806452 63806498 -58037358 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1071 405 0 0 0 chr11 63806498 63806543 -58037313 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1071 2646 271 45 30 chr11 63806554 63807332 -58036524 + Lx7 LINE L1 5984 6773 -923 5 1071 207 0 0 0 chr11 63807797 63807820 -58036036 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1071 306 295 21 10 chr11 63808357 63808453 -58035403 - MER103 DNA DNA -67 99 3 5 1071 1848 197 46 31 chr11 63808696 63809084 -58034772 - MTD LTR MaLR -14 405 12 5 1071 3265 225 177 35 chr11 63809114 63810215 -58033641 - MTD-int LTR MaLR 0 1258 1 5 1071 1731 188 102 16 chr11 63810229 63810602 -58033254 - MTD LTR MaLR -14 405 1 5 1071 419 237 61 49 chr11 63810602 63810758 -58033098 - MTC-int LTR MaLR -79 1179 1022 5 1071 420 290 123 107 chr11 63810987 63811539 -58032317 + MLT2F LTR ERVL 1 561 -102 5 1071 289 244 202 13 chr11 63811667 63811746 -58032110 + B3A SINE B2 1 94 -104 5 1071 441 0 0 0 chr11 63812753 63812802 -58031054 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1071 183 162 0 0 chr11 63814361 63814398 -58029458 + C-rich Low_complexity Low_complexity 1 37 0 5 1071 233 209 0 0 chr11 63817235 63817278 -58026578 + GA-rich Low_complexity Low_complexity 2 44 0 5 1071 345 191 32 153 chr11 63818202 63818326 -58025530 + MT2B2 LTR ERVL 149 257 -327 5 1071 737 159 68 0 chr11 63818237 63818369 -58025487 + B1_Mus1 SINE Alu 8 148 0 5 1071 245 146 0 20 chr11 63818464 63818513 -58025343 + (CCAA)n Simple_repeat Simple_repeat 1 48 0 5 1071 518 207 144 7 chr11 63818576 63818722 -58025134 - B3 SINE B2 -3 213 48 5 1071 1183 106 4 69 chr11 63818906 63818927 -58024929 - Lx LINE L1 0 6654 6641 5 1071 1529 68 16 0 chr11 63818927 63819118 -58024738 - B2_Mm2 SINE B2 0 195 2 5 1071 1183 106 4 69 chr11 63819118 63819328 -58024528 - Lx LINE L1 -14 6640 6438 5 1071 1598 47 0 20 chr11 63819345 63819542 -58024314 - B2_Mm1a SINE B2 0 193 1 5 1071 324 120 0 0 chr11 63819983 63820033 -58023823 + (T)n Simple_repeat Simple_repeat 1 50 0 5 1071 1220 61 0 0 chr11 63820033 63820180 -58023676 - B1_Mus2 SINE Alu 0 147 1 5 1071 364 207 90 49 chr11 63820231 63820353 -58023503 - B1F SINE Alu 0 149 23 5 1071 355 188 146 43 chr11 63820579 63820683 -58023173 + PB1D9 SINE Alu 12 120 0 5 1071 459 52 0 0 chr11 63820704 63820762 -58023094 + (TATG)n Simple_repeat Simple_repeat 1 58 0 5 1071 338 191 16 16 chr11 63820776 63820840 -58023016 - RSINE1 SINE B4 -43 122 59 5 1071 633 90 0 0 chr11 63820919 63821008 -58022848 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 5 1071 498 282 160 14 chr11 63821016 63821160 -58022696 - RSINE1 SINE B4 0 165 1 5 1071 2621 88 2 6 chr11 63821256 63821665 -58022191 + L1_Mm LINE L1 3533 3914 0 5 1071 22 0 0 0 chr11 63821934 63821956 -58021900 + AT_rich Low_complexity Low_complexity 1 22 0 5 1071 614 242 72 10 chr11 63822097 63822332 -58021524 + L1MA7 LINE L1 6053 6289 -2 5 1071 514 324 64 37 chr11 63823438 63823656 -58020200 - B4 SINE B4 0 292 69 5 1071 630 233 63 21 chr11 63823787 63823976 -58019880 - B3A SINE B2 -1 194 6 5 1071 517 266 0 0 chr11 63824042 63824155 -58019701 - PB1D9 SINE Alu -6 114 2 5 1071 361 368 16 16 chr11 63824702 63824829 -58019027 + RCHARR1 DNA MER1_type 136 262 -712 5 1071 186 103 0 0 chr11 63825962 63825991 -58017865 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 5 1071 244 242 77 82 chr11 63826067 63826204 -58017652 + L1MD2 LINE L1 6109 6356 -3 5 1071 198 0 0 0 chr11 63826534 63826556 -58017300 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1071 195 69 0 0 chr11 63826624 63826653 -58017203 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 5 1071 23 0 0 0 chr11 63828144 63828167 -58015689 + AT_rich Low_complexity Low_complexity 1 23 0 5 1071 410 291 115 115 chr11 63829747 63829784 -58014072 - B4A SINE B4 -2 290 266 5 1071 357 82 0 0 chr11 63829784 63829833 -58014023 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1071 410 291 115 115 chr11 63829833 63830082 -58013774 - B4A SINE B4 -27 265 4 5 1071 417 269 18 44 chr11 63830539 63830652 -58013204 + PB1D9 SINE Alu 1 110 -10 5 1071 813 38 0 0 chr11 63830652 63830757 -58013099 + (CAG)n Simple_repeat Simple_repeat 2 106 0 5 1072 212 274 125 59 chr11 63832652 63832788 -58011068 + L3 LINE CR1 2841 2985 -1504 5 1072 300 111 0 0 chr11 63834205 63834250 -58009606 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1072 255 0 20 82 chr11 63836722 63836771 -58007085 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1072 288 0 0 0 chr11 63836782 63836814 -58007042 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5 1072 21 0 0 0 chr11 63840597 63840618 -58003238 + GC_rich Low_complexity Low_complexity 1 21 0 5 1072 234 91 0 0 chr11 63840725 63840758 -58003098 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 1072 385 183 8 102 chr11 63842240 63842368 -58001488 - PB1D7 SINE Alu -2 118 3 5 1072 264 122 0 0 chr11 63842454 63842495 -58001361 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 5 1072 590 200 45 0 chr11 63843341 63843451 -58000405 - B1_Mur1 SINE Alu -34 115 1 5 1072 212 329 244 22 chr11 63844212 63844442 -57999414 + B4A SINE B4 2 282 -10 5 1072 1254 35 52 0 chr11 63844465 63844638 -57999218 + B2_Mm1t SINE B2 12 193 0 5 1072 582 63 0 0 chr11 63844674 63844753 -57999103 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1072 225 328 0 16 chr11 63844841 63844884 -57998972 + ID_B1 SINE B4 88 130 -94 5 1072 228 35 0 0 chr11 63844884 63844913 -57998943 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 5 1072 225 328 0 16 chr11 63844913 63844931 -57998925 + ID_B1 SINE B4 131 148 -76 5 1072 634 191 56 0 chr11 63845283 63845409 -57998447 + B1_Mur2 SINE Alu 15 147 -2 5 1072 335 284 95 0 chr11 63847698 63847814 -57996042 - B1F SINE Alu -5 144 18 5 1072 318 242 30 33 chr11 63848233 63848368 -57995488 - MIRb SINE MIR -104 172 37 5 1072 804 241 61 42 chr11 63848641 63848853 -57995003 - B3 SINE B2 0 216 1 5 1072 533 105 21 10 chr11 63849630 63849726 -57994130 + L1_Mus3 LINE L1 6542 6638 0 5 1072 234 91 0 0 chr11 63851536 63851569 -57992287 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1072 564 296 0 40 chr11 63851570 63851746 -57992110 - B3A SINE B2 -27 171 3 5 1072 201 355 57 0 chr11 63854164 63854288 -57989568 + L3 LINE CR1 4218 4348 -141 5 1072 476 311 122 0 chr11 63854464 63854660 -57989196 - Tigger7 DNA MER2_type -1 2490 2271 5 1072 257 242 212 0 chr11 63854650 63854749 -57989107 - Tigger7 DNA MER2_type -2371 120 1 5 1072 990 188 95 15 chr11 63855436 63855636 -57988220 + B3 SINE B2 1 216 0 5 1072 504 258 30 22 chr11 63856423 63856558 -57987298 - B4 SINE B4 -90 202 67 5 1072 553 260 32 52 chr11 63856748 63856902 -57986954 - RSINE1 SINE B4 0 165 15 5 1072 606 219 55 0 chr11 63857355 63857483 -57986373 + B1_Mur1 SINE Alu 7 141 -8 5 1072 762 273 20 10 chr11 63857987 63858183 -57985673 + B3A SINE B2 1 198 0 5 1072 213 235 0 0 chr11 63858339 63858390 -57985466 + A-rich Low_complexity Low_complexity 1 51 0 5 1072 446 49 16 0 chr11 63858543 63858604 -57985252 + (CAAAC)n Simple_repeat Simple_repeat 2 63 0 5 1072 635 253 24 42 chr11 63858996 63859161 -57984695 + RSINE1 SINE B4 4 165 0 5 1072 529 268 42 37 chr11 63859888 63860078 -57983778 - B4 SINE B4 -20 272 82 5 1072 288 274 59 50 chr11 63860150 63860269 -57983587 + MER20 DNA MER1_type 52 171 -48 5 1072 202 275 43 14 chr11 63860704 63860774 -57983082 + L2a LINE L2 3296 3367 -59 5 1072 751 290 51 66 chr11 63861656 63861929 -57981927 - B4A SINE B4 -19 273 5 5 1072 940 97 22 29 chr11 63862784 63862922 -57980934 + B1_Mus1 SINE Alu 5 141 -7 5 1072 312 178 11 43 chr11 63862923 63863017 -57980839 + GA-rich Low_complexity Low_complexity 4 94 0 5 1072 266 125 21 0 chr11 63865230 63865278 -57978578 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 5 1072 2837 203 136 28 chr11 63867643 63868332 -57975524 - RMER1C Other Other 0 1342 579 5 1072 25 31 0 0 chr11 63869881 63869913 -57973943 + AT_rich Low_complexity Low_complexity 1 32 0 6 1072 417 331 13 50 chr11 63869950 63870109 -57973747 - RSINE1 SINE B4 0 165 13 6 1072 563 92 11 0 chr11 63871034 63871121 -57972735 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 1072 779 140 348 6 chr11 63871341 63871499 -57972357 + B3 SINE B2 5 216 0 6 1072 316 210 26 115 chr11 63871517 63871528 -57972328 + MT2B LTR ERVL 155 165 -436 6 1072 198 0 0 0 chr11 63871528 63871550 -57972306 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1072 316 210 26 115 chr11 63871550 63871651 -57972205 + MT2B LTR ERVL 166 256 -345 6 1072 727 171 2 30 chr11 63871554 63871703 -57972153 + B1_Mus2 SINE Alu 9 149 0 6 1072 1243 214 62 28 chr11 63871768 63872090 -57971766 + MTD LTR MaLR 87 419 0 6 1072 1913 207 52 114 chr11 63872090 63872805 -57971051 + MTD-int LTR MaLR 1 772 -486 6 1072 21 36 0 0 chr11 63874343 63874371 -57969485 + AT_rich Low_complexity Low_complexity 1 28 0 6 1072 219 227 0 0 chr11 63874824 63874868 -57968988 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1072 216 394 61 24 chr11 63875648 63875812 -57968044 - MIR SINE MIR -76 186 17 6 1072 207 100 0 0 chr11 63875932 63875962 -57967894 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1072 661 248 65 0 chr11 63875987 63876140 -57967716 - B3A SINE B2 -34 164 2 6 1072 309 51 0 0 chr11 63876923 63876962 -57966894 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1072 7536 105 22 8 chr11 63877139 63878650 -57965206 + L1_Mus4 LINE L1 5103 6636 0 6 1072 309 236 28 0 chr11 63880145 63880217 -57963639 - PB1D9 SINE Alu -29 91 18 6 1072 716 293 75 22 chr11 63880601 63880919 -57962937 - ORR1E LTR MaLR -24 335 1 6 1072 407 215 65 0 chr11 63880919 63880986 -57962870 - ORR1E-int LTR MaLR -53 1527 1455 6 1072 233 354 60 26 chr11 63881002 63881118 -57962738 + PB1D7 SINE Alu 1 120 0 6 1072 1441 211 19 0 chr11 63881120 63881390 -57962466 + B4A SINE B4 1 275 -17 6 1072 527 257 80 7 chr11 63881758 63881895 -57961961 + B1F SINE Alu 2 148 -1 6 1072 243 0 0 0 chr11 63882024 63882051 -57961805 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 1072 526 294 119 31 chr11 63882086 63882444 -57961412 + L1MA4 LINE L1 5644 6018 -285 6 1072 690 220 113 16 chr11 63883399 63883593 -57960263 + B3 SINE B2 3 215 -1 6 1072 21 36 0 0 chr11 63885919 63885947 -57957909 + AT_rich Low_complexity Low_complexity 1 28 0 6 1072 570 199 72 233 chr11 63886255 63886603 -57957253 - B4 SINE B4 0 292 1 6 1072 369 0 0 0 chr11 63887693 63887734 -57956122 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1072 621 247 67 50 chr11 63888040 63888279 -57955577 + RMER15 LTR ERVL 293 535 -40 6 1072 959 198 11 16 chr11 63888333 63888518 -57955338 + ORR1D1 LTR MaLR 3 186 -188 6 1072 384 156 0 0 chr11 63888512 63888576 -57955280 + ORR1D1 LTR MaLR 311 374 0 6 1072 342 235 165 0 chr11 63888924 63889009 -57954847 - ORR1D2 LTR MaLR -269 101 3 6 1072 1936 236 81 9 chr11 63889210 63889719 -57954137 - Lx6 LINE L1 -3 7457 6557 6 1072 510 296 47 24 chr11 63889965 63890218 -57953638 + RMER15 LTR ERVL 310 568 -7 6 1072 1082 51 0 28 chr11 63891166 63891308 -57952548 + B1_Mus1 SINE Alu 2 139 -9 6 1072 273 29 0 0 chr11 63891527 63891561 -57952295 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1072 226 323 29 29 chr11 63891717 63891819 -57952037 - MIR3 SINE MIR -24 184 83 6 1072 326 331 51 14 chr11 63892044 63892182 -57951674 - L2a LINE L2 -2 3424 3282 6 1072 1690 247 117 26 chr11 63894115 63894738 -57949118 + L1MB8 LINE L1 5428 6107 -71 6 1072 1848 138 98 38 chr11 63894886 63895232 -57948624 - ORR1B2 LTR MaLR 0 367 1 6 1072 295 320 19 37 chr11 63896563 63896670 -57947186 - PB1D10 SINE Alu 0 117 13 6 1072 357 24 0 0 chr11 63897336 63897378 -57946478 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1072 459 293 15 22 chr11 63897388 63897524 -57946332 - RSINE1 SINE B4 -19 146 12 6 1072 1277 237 27 80 chr11 63898157 63898533 -57945323 - ORR1E LTR MaLR 0 359 4 6 1072 1793 258 163 42 chr11 63898538 63899282 -57944574 - ORR1E-int LTR MaLR -14 1356 523 6 1072 772 200 24 18 chr11 63899311 63899479 -57944377 - ORR1E-int LTR MaLR -1174 406 238 6 1072 759 271 71 30 chr11 63899471 63899737 -57944119 - ORR1E LTR MaLR -77 282 6 6 1072 1113 231 137 34 chr11 63900234 63900556 -57943300 + ORR1E LTR MaLR 1 355 -4 6 1072 492 230 20 0 chr11 63900561 63900661 -57943195 - PB1D10 SINE Alu -15 102 1 6 1072 263 306 61 0 chr11 63900671 63900769 -57943087 - MLT1B LTR MaLR -221 169 66 6 1072 458 251 175 38 chr11 63900980 63901191 -57942665 + L1M6 LINE L1 1595 1834 -4662 6 1072 415 284 83 26 chr11 63901193 63901421 -57942435 - Charlie18a DNA MER1_type -2 340 100 6 1072 313 259 110 9 chr11 63902151 63902260 -57941596 + B3A SINE B2 57 176 -22 6 1072 356 268 52 29 chr11 63903447 63903620 -57940236 + RMER15 LTR ERVL 381 557 -18 6 1072 479 289 28 0 chr11 63903906 63904048 -57939808 - B1F1 SINE Alu -2 147 2 6 1072 378 0 0 0 chr11 63904567 63904609 -57939247 + (TTA)n Simple_repeat Simple_repeat 3 44 0 6 1072 273 162 0 0 chr11 63905284 63905352 -57938504 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1072 282 56 0 0 chr11 63905351 63905387 -57938469 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1072 27 0 0 0 chr11 63905899 63905926 -57937930 + AT_rich Low_complexity Low_complexity 1 27 0 6 1072 1653 258 26 67 chr11 63906296 63906803 -57937053 - RMER19C LTR ERVK 0 611 126 6 1072 852 211 75 50 chr11 63907197 63907476 -57936380 - L1MA8 LINE L1 -1 6290 6005 6 1072 288 211 18 0 chr11 63907679 63907736 -57936120 - MTC LTR MaLR -361 60 3 6 1072 1779 249 108 6 chr11 63907901 63908390 -57935466 + Lx7 LINE L1 6726 7264 -432 6 1072 331 289 11 0 chr11 63908421 63908511 -57935345 - MER44B DNA MER2_type -459 91 1 6 1072 458 172 23 0 chr11 63909626 63909713 -57934143 + RSINE1 SINE B4 31 119 -46 6 1072 262 159 0 0 chr11 63910987 63911031 -57932825 + L1MC LINE L1 4950 4993 -1153 6 1072 247 196 22 0 chr11 63911049 63911095 -57932761 + L1MC LINE L1 5059 5105 -1041 6 1072 1116 185 23 9 chr11 63911756 63911974 -57931882 - URR1B DNA MER1_type 0 225 5 6 1072 861 177 103 47 chr11 63913011 63913224 -57930632 + URR1A DNA MER1_type 2 226 0 6 1072 242 343 49 0 chr11 63913705 63913848 -57930008 + L1MC5 LINE L1 7711 7860 -101 6 1072 1116 91 0 0 chr11 63914174 63914317 -57929539 + B1_Mus2 SINE Alu 1 143 -4 6 1072 234 0 0 0 chr11 63914317 63914343 -57929513 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 1072 678 58 0 0 chr11 63914343 63914430 -57929426 + (GGGA)n Simple_repeat Simple_repeat 3 89 0 6 1072 303 157 0 0 chr11 63914430 63914500 -57929356 + GA-rich Low_complexity Low_complexity 2 71 0 6 1072 413 278 119 57 chr11 63914840 63915050 -57928806 - L1MD3 LINE L1 -116 7879 7657 6 1072 1609 250 106 36 chr11 63915236 63915734 -57928122 - MT2A LTR ERVL 0 533 1 6 1072 954 307 90 23 chr11 63916027 63916594 -57927262 + L1MA9 LINE L1 5565 6169 -143 6 1072 886 273 5 5 chr11 63917658 63917864 -57925992 - B3 SINE B2 -4 212 7 6 1072 261 0 0 0 chr11 63917871 63917900 -57925956 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 1072 898 241 19 5 chr11 63918192 63918405 -57925451 + B3 SINE B2 1 216 0 6 1072 750 202 40 60 chr11 63918439 63918639 -57925217 - B3A SINE B2 0 198 3 6 1072 207 0 0 0 chr11 63918648 63918671 -57925185 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1072 261 0 0 0 chr11 63918796 63918825 -57925031 + (TTG)n Simple_repeat Simple_repeat 1 29 0 6 1072 225 0 0 0 chr11 63918825 63918850 -57925006 + (ATG)n Simple_repeat Simple_repeat 3 27 0 6 1072 307 360 40 45 chr11 63919061 63919259 -57924597 - MIR SINE MIR -57 205 9 6 1072 803 292 123 9 chr11 63919889 63920311 -57923545 - L1M5 LINE L1 -1443 4703 4234 6 1072 482 268 128 62 chr11 63920376 63920823 -57923033 - L1ME2 LINE L1 -6 6158 5676 6 1072 390 69 0 0 chr11 63920849 63920907 -57922949 + (T)n Simple_repeat Simple_repeat 1 58 0 6 1072 413 304 74 58 chr11 63921262 63921587 -57922269 - L1M5 LINE L1 -2480 3666 3337 6 1072 27 0 0 0 chr11 63922171 63922198 -57921658 + AT_rich Low_complexity Low_complexity 1 27 0 6 1072 342 366 101 48 chr11 63922319 63922715 -57921141 - L1M5 LINE L1 -3371 2775 2359 6 1072 219 276 26 22 chr11 63922928 63923034 -57920822 - B1F SINE Alu -8 141 1 6 1072 334 301 65 7 chr11 63923050 63923204 -57920652 - Lx8 LINE L1 -439 7034 6872 6 1072 378 0 0 0 chr11 63923880 63923922 -57919934 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1072 465 315 7 33 chr11 63924010 63924161 -57919695 + RSINE1 SINE B4 1 147 -18 6 1072 211 292 140 1 chr11 63924373 63924464 -57919392 - MIRb SINE MIR -140 136 34 6 1072 579 260 179 17 chr11 63924780 63925015 -57918841 - B4 SINE B4 -19 273 1 6 1072 216 0 0 0 chr11 63925529 63925553 -57918303 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1072 415 288 103 16 chr11 63926015 63926209 -57917647 - L1ME4a LINE L1 -293 5831 5621 6 1072 886 145 209 26 chr11 63927530 63927721 -57916135 - URR1A DNA MER1_type 0 226 1 6 1072 303 290 114 53 chr11 63928282 63928413 -57915443 + B1F SINE Alu 10 148 -1 6 1072 450 0 0 0 chr11 63929033 63929083 -57914773 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1072 513 0 0 0 chr11 63929083 63929139 -57914717 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1072 234 91 0 0 chr11 63930503 63930536 -57913320 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 6 1072 429 20 0 0 chr11 63930536 63930585 -57913271 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1072 435 310 40 11 chr11 63931253 63931429 -57912427 + MARNA DNA Mariner 214 394 -192 6 1072 214 87 0 98 chr11 63931463 63931514 -57912342 + A-rich Low_complexity Low_complexity 6 51 0 6 1072 936 27 0 0 chr11 63931669 63931780 -57912076 + (GGAA)n Simple_repeat Simple_repeat 1 111 0 6 1072 195 42 0 0 chr11 63932135 63932159 -57911697 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 1072 262 304 146 28 chr11 63932224 63932478 -57911378 - L1MC4 LINE L1 -953 7089 6806 7 1072 213 361 0 0 chr11 63932546 63932618 -57911238 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1072 186 43 0 0 chr11 63933608 63933631 -57910225 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1072 510 322 81 39 chr11 63934730 63935089 -57908767 - Charlie1b DNA MER1_type -142 381 8 7 1072 214 311 82 58 chr11 63935308 63935479 -57908377 + L2 LINE L2 2403 2577 -842 7 1072 418 102 0 14 chr11 63937223 63937293 -57906563 + B1_Mm SINE Alu 79 147 0 7 1072 345 47 0 0 chr11 63937326 63937369 -57906487 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1072 228 319 159 7 chr11 63937403 63937548 -57906308 - MLT1K LTR MaLR -113 482 316 7 1072 190 309 61 12 chr11 63937993 63938075 -57905781 + L2 LINE L2 221 306 -3113 7 1072 440 280 318 39 chr11 63939473 63939781 -57904075 - LTR88b LTR Gypsy? -405 432 39 7 1072 213 280 27 114 chr11 63939797 63939946 -57903910 - L2c LINE L2 -18 3369 3234 7 1072 389 306 36 0 chr11 63940442 63940553 -57903303 + ORR1E LTR MaLR 1 115 -244 7 1072 510 17 0 0 chr11 63941334 63941393 -57902463 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1072 295 267 18 45 chr11 63942880 63942990 -57900866 - L1ME2z LINE L1 -6 6438 6332 7 1072 235 176 39 0 chr11 63943104 63943155 -57900701 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 7 1072 1157 243 161 9 chr11 63943812 63944235 -57899621 + RCHARR1 DNA MER1_type 2 488 -486 7 1072 360 331 33 0 chr11 63944626 63944747 -57899109 + RSINE1 SINE B4 11 135 -30 7 1072 250 192 54 14 chr11 63944780 63944854 -57899002 + RCHARR1 DNA MER1_type 486 562 -412 7 1072 603 310 54 60 chr11 63944889 63945242 -57898614 + ORR1E LTR MaLR 3 353 -6 7 1072 1025 316 66 6 chr11 63945284 63945752 -57898104 - L1MB3 LINE L1 -143 6040 5545 7 1072 232 349 0 36 chr11 63945804 63945914 -57897942 - MER57C2 LTR ERV1 -59 375 270 7 1072 344 269 16 40 chr11 63946332 63946456 -57897400 - L2 LINE L2 -510 2909 2789 7 1072 222 198 0 8 chr11 63947621 63947677 -57896179 - L2a LINE L2 -10 3416 3324 7 1072 223 258 104 22 chr11 63949205 63949340 -57894516 - MIR3 SINE MIR -45 163 18 7 1072 249 33 0 0 chr11 63949625 63949655 -57894201 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1072 1487 202 78 6 chr11 63950004 63950352 -57893504 + MTD LTR MaLR 18 390 -29 7 1072 6582 195 36 24 chr11 63950382 63952112 -57891744 - Lx5 LINE L1 -1 7049 5305 7 1072 4074 219 20 45 chr11 63952113 63953031 -57890825 + MERVK26-int LTR ERVK 6020 6914 -5 7 1072 438 233 15 77 chr11 63953259 63953368 -57890488 + RMER20B LTR ERVK 234 339 -288 7 1072 648 0 0 0 chr11 63953368 63953440 -57890416 + (TTTTG)n Simple_repeat Simple_repeat 1 72 0 7 1072 1058 90 0 0 chr11 63953440 63953574 -57890282 - B1_Mus2 SINE Alu -13 134 1 7 1072 438 233 15 77 chr11 63953574 63953593 -57890263 + RMER20B LTR ERVK 340 354 -273 7 1072 3140 154 27 33 chr11 63953593 63954455 -57889401 - L1_Mur3 LINE L1 -4099 1778 921 7 1072 252 106 64 0 chr11 63954766 63954813 -57889043 + MTD LTR MaLR 370 419 0 7 1072 2350 158 10 7 chr11 63955187 63955596 -57888260 + MTC LTR MaLR 12 421 0 7 1072 382 291 137 44 chr11 63955622 63955827 -57888029 - MLT1E1A LTR MaLR -46 634 411 7 1072 880 249 127 23 chr11 63956319 63956578 -57887278 + B4 SINE B4 2 287 -5 7 1072 477 0 0 0 chr11 63956584 63956637 -57887219 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1072 234 0 0 0 chr11 63958671 63958697 -57885159 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1072 541 182 14 0 chr11 63959041 63959184 -57884672 + (CA)n Simple_repeat Simple_repeat 1 145 0 7 1072 315 49 0 0 chr11 63959184 63959225 -57884631 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1072 598 335 109 7 chr11 63959355 63959806 -57884050 - L1MA4A LINE L1 -391 5912 5416 7 1072 681 202 0 0 chr11 63960241 63960360 -57883496 + B1_Mur3 SINE Alu 6 124 -25 7 1072 506 286 8 0 chr11 63960360 63960486 -57883370 - B1F SINE Alu -22 127 1 7 1072 1088 49 7 59 chr11 63961336 63961489 -57882367 - B1_Mm SINE Alu 0 147 3 7 1072 291 85 0 0 chr11 63962199 63962246 -57881610 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 7 1072 238 294 0 0 chr11 63962246 63962297 -57881559 + C-rich Low_complexity Low_complexity 1 51 0 7 1072 477 34 0 0 chr11 63962297 63962356 -57881500 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1072 633 252 13 13 chr11 63962363 63962512 -57881344 - RSINE1 SINE B4 -14 151 3 7 1072 241 270 68 0 chr11 63962736 63962810 -57881046 - MER5A DNA MER1_type -63 126 48 7 16 301 366 43 5 chr11 63962960 63963144 -57880712 + MER58C DNA MER1_type 9 199 -16 7 1073 221 169 17 0 chr11 63963208 63963267 -57880589 + CT-rich Low_complexity Low_complexity 1 60 0 7 1073 491 272 43 27 chr11 63963882 63964067 -57879789 - B3A SINE B2 0 198 11 7 1073 251 190 121 0 chr11 63965158 63965216 -57878640 - MER47B DNA MER2_type -1 417 353 7 1073 329 299 51 8 chr11 63965286 63965404 -57878452 - MER47B DNA MER2_type -284 134 12 7 1073 706 216 33 33 chr11 63965740 63965922 -57877934 - B3A SINE B2 -16 182 1 7 1073 219 133 0 0 chr11 63966218 63966263 -57877593 + (G)n Simple_repeat Simple_repeat 1 45 0 7 1073 313 302 110 42 chr11 63966266 63966529 -57877327 + B4 SINE B4 1 281 -11 7 1073 596 237 38 15 chr11 63967198 63967331 -57876525 + B1_Mur1 SINE Alu 3 138 -11 7 1073 345 24 0 0 chr11 63967636 63967678 -57876178 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1073 6616 4 0 0 chr11 63969322 63970043 -57873813 - L1Md_A LINE L1 0 6582 5862 7 1073 219 275 140 44 chr11 63971194 63971308 -57872548 + PB1 SINE Alu 1 125 -2 7 1073 1289 210 77 46 chr11 63972195 63972397 -57871459 - ORR1D1 LTR MaLR 0 374 164 7 1073 861 10 0 0 chr11 63972397 63972495 -57871361 + (GGAGA)n Simple_repeat Simple_repeat 5 102 0 7 1073 1289 210 77 46 chr11 63972495 63972641 -57871215 - ORR1D1 LTR MaLR -211 163 15 7 1073 237 269 77 0 chr11 63973165 63973243 -57870613 - ORR1E LTR MaLR -256 103 20 7 1073 552 241 49 19 chr11 63973663 63973850 -57870006 + L1MA5 LINE L1 6110 6300 0 7 1073 442 230 4 6 chr11 63973837 63973954 -57869902 + L1MA5 LINE L1 6153 6277 -23 7 1073 425 267 87 40 chr11 63974563 63974840 -57869016 - L1M5 LINE L1 -917 5229 4940 7 1073 568 338 32 26 chr11 63975094 63975407 -57868449 + L4 LINE RTE 1308 1622 -407 7 1073 605 237 0 41 chr11 63975487 63975632 -57868224 - B1_Mur1 SINE Alu -7 142 4 7 1073 332 263 0 0 chr11 63975770 63975846 -57868010 - MLT1A LTR MaLR -34 340 265 7 1073 935 209 30 25 chr11 63976309 63976510 -57867346 + ID_B1 SINE B4 16 217 -7 7 1073 536 224 40 0 chr11 63977492 63977617 -57866239 + B3 SINE B2 82 211 -5 7 1073 310 246 25 13 chr11 63977623 63977745 -57866111 + B3 SINE B2 74 198 0 7 1073 70 33 0 0 chr11 63977773 63977864 -57865992 + AT_rich Low_complexity Low_complexity 1 91 0 7 1073 537 16 0 0 chr11 63977961 63978023 -57865833 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1073 241 226 48 0 chr11 63978746 63978808 -57865048 + CT-rich Low_complexity Low_complexity 4 68 0 7 1073 469 184 51 0 chr11 63979537 63979635 -57864221 - RMER1B Other Other -435 631 529 7 1073 569 220 80 17 chr11 63980273 63980449 -57863407 - B3A SINE B2 -6 192 6 7 1073 22 0 0 0 chr11 63980567 63980589 -57863267 + AT_rich Low_complexity Low_complexity 1 22 0 7 1073 204 179 0 0 chr11 63980609 63980648 -57863208 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1073 750 170 179 12 chr11 63980653 63980826 -57863030 - B3 SINE B2 0 216 15 7 1073 393 22 0 0 chr11 63982069 63982115 -57861741 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1073 372 255 58 13 chr11 63982896 63983021 -57860835 + B4A SINE B4 6 150 -142 7 1073 356 178 186 48 chr11 63983171 63983295 -57860561 - MLT1A1 LTR MaLR 0 408 268 7 1073 256 167 40 22 chr11 63983455 63983552 -57860304 + MLT2B4 LTR ERVL 20 118 -397 7 1073 3121 269 76 24 chr11 63983800 63984762 -57859094 - Lx8 LINE L1 -185 7288 6279 7 1073 575 259 144 0 chr11 63984762 63984936 -57858920 - B3 SINE B2 -17 199 1 7 1073 3121 269 76 24 chr11 63984936 63984987 -57858869 - Lx8 LINE L1 -1195 6278 6223 7 1073 987 258 77 101 chr11 63985221 63985422 -57858434 - Lx8 LINE L1 -1546 5927 5745 7 1073 2724 137 7 14 chr11 63985422 63985853 -57858003 - Lx4A LINE L1 -1 7057 6630 7 1073 987 301 68 70 chr11 63985853 63986228 -57857628 - Lx8 LINE L1 -136 5744 5351 7 1073 809 154 34 27 chr11 63986256 63986403 -57857453 - B1_Mus1 SINE Alu 0 148 1 7 1073 258 219 16 0 chr11 63986403 63986467 -57857389 - L1_Rod LINE L1 -510 5337 5273 7 1073 31 0 0 0 chr11 63986723 63986754 -57857102 + AT_rich Low_complexity Low_complexity 1 31 0 7 1073 786 162 54 65 chr11 63987818 63988003 -57855853 + ORR1C2 LTR MaLR 1 183 -191 7 1073 214 0 81 27 chr11 63988010 63988047 -57855809 + (TCTCCC)n Simple_repeat Simple_repeat 4 42 0 7 1073 982 212 19 14 chr11 63988053 63988263 -57855593 + ORR1C2 LTR MaLR 174 384 0 7 1073 925 192 6 0 chr11 63988644 63988816 -57855040 - B3 SINE B2 0 216 44 7 1073 194 33 0 62 chr11 63988823 63988855 -57855001 + (TATAA)n Simple_repeat Simple_repeat 3 32 0 7 1073 1361 53 0 36 chr11 63989106 63989301 -57854555 + B2_Mm2 SINE B2 6 193 -2 7 1073 1109 96 7 0 chr11 63989301 63989447 -57854409 + B1_Mus2 SINE Alu 1 147 0 7 1073 438 69 0 0 chr11 63989448 63989506 -57854350 + (GGA)n Simple_repeat Simple_repeat 2 59 0 7 1073 567 171 0 0 chr11 63990192 63990297 -57853559 + (CA)n Simple_repeat Simple_repeat 1 105 0 7 1073 236 314 65 0 chr11 63991278 63991377 -57852479 - B1F SINE Alu -30 119 16 7 1073 456 19 0 0 chr11 63991398 63991451 -57852405 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1073 525 194 0 0 chr11 63991493 63991673 -57852183 + CT-rich Low_complexity Low_complexity 1 180 0 7 1073 368 249 11 27 chr11 63992658 63992783 -57851073 + PB1D10 SINE Alu 1 120 0 7 1073 456 104 0 0 chr11 63992797 63992864 -57850992 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1073 229 202 36 59 chr11 63993396 63993481 -57850375 + PB1D10 SINE Alu 35 119 -30 8 1073 348 24 0 0 chr11 63993508 63993549 -57850307 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1073 201 39 0 0 chr11 63994462 63994488 -57849368 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1073 1256 169 0 39 chr11 63994501 63994735 -57849121 - URR1B DNA MER1_type 0 225 1 8 1073 450 356 44 38 chr11 63995556 63996006 -57847850 + L1ME3B LINE L1 5497 5949 -291 8 1073 346 347 6 12 chr11 63998864 63999036 -57844820 + (TATG)n Simple_repeat Simple_repeat 1 171 0 8 1073 248 154 0 19 chr11 63999065 63999118 -57844738 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 8 1073 255 353 17 12 chr11 63999140 63999312 -57844544 + (TATG)n Simple_repeat Simple_repeat 4 176 0 8 1073 264 385 6 0 chr11 63999245 63999414 -57844442 + (TG)n Simple_repeat Simple_repeat 1 170 0 8 1073 422 286 12 36 chr11 63999460 63999627 -57844229 + (TATG)n Simple_repeat Simple_repeat 4 166 0 8 1073 523 238 105 26 chr11 63999810 64000000 -57843856 + Lx8 LINE L1 6509 6713 -760 8 1073 342 155 0 17 chr11 64000002 64000061 -57843795 + Lx8 LINE L1 6716 6773 -700 1 1073 1279 230 119 8 chr11 64000062 64000439 -57843417 - MTD LTR MaLR 0 419 1 2 1073 21 0 0 0 chr11 64000906 64000927 -57842929 + AT_rich Low_complexity Low_complexity 1 21 0 3 1073 21 0 0 0 chr11 64000962 64000983 -57842873 + AT_rich Low_complexity Low_complexity 1 21 0 4 1073 1570 125 5 0 chr11 64001986 64002210 -57841646 - URR1B DNA MER1_type 0 225 1 5 1073 901 239 124 56 chr11 64002369 64002724 -57841132 - MTEa LTR MaLR 0 379 1 6 1073 1273 173 4 22 chr11 64002820 64003050 -57840806 + URR1A DNA MER1_type 1 226 0 7 1073 1380 210 192 5 chr11 64003107 64003523 -57840333 - MT2A LTR ERVL -39 494 1 8 1073 302 311 28 28 chr11 64003644 64003753 -57840103 + PB1D10 SINE Alu 1 109 -8 9 1073 681 325 74 20 chr11 64005539 64005837 -57838019 + MER2 DNA MER2_type 26 339 -6 1 1073 465 131 19 9 chr11 64005961 64006069 -57837787 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1073 219 211 13 38 chr11 64006089 64006168 -57837688 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1073 201 121 0 0 chr11 64006694 64006727 -57837129 + (CCA)n Simple_repeat Simple_repeat 1 33 0 1 1073 282 116 0 0 chr11 64007352 64007395 -57836461 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1073 260 254 0 145 chr11 64007558 64007641 -57836215 + PB1D9 SINE Alu 5 75 -45 1 1073 665 264 123 4 chr11 64008110 64008346 -57835510 + RMER21B LTR ERV1 304 567 -275 1 1073 225 241 0 65 chr11 64008373 64008435 -57835421 + RMER21B LTR ERV1 777 834 -113 1 1073 199 276 50 124 chr11 64008593 64008754 -57835102 - MER5B DNA MER1_type -29 149 1 1 1073 21 36 0 0 chr11 64009389 64009417 -57834439 + AT_rich Low_complexity Low_complexity 1 28 0 1 1073 563 328 110 8 chr11 64009429 64009675 -57834181 - MLT1A0 LTR MaLR -5 360 90 1 1073 270 380 18 35 chr11 64011020 64011189 -57832667 + B4A SINE B4 2 167 -125 1 1073 665 68 0 0 chr11 64011318 64011406 -57832450 - BC1_Mm scRNA scRNA -64 88 1 2 1073 2471 240 48 80 chr11 64012558 64013268 -57830588 + Lx6 LINE L1 6746 7432 -28 2 1073 234 350 43 6 chr11 64013292 64013453 -57830403 + MER58A DNA MER1_type 58 224 0 2 1073 651 283 15 85 chr11 64013518 64013719 -57830137 + B3 SINE B2 9 195 0 2 1073 407 196 115 53 chr11 64013818 64013931 -57829925 + ID_B1 SINE B4 105 224 0 2 1073 389 281 136 7 chr11 64013950 64014097 -57829759 + MER2 DNA MER2_type 87 252 -93 2 1073 243 297 63 105 chr11 64014841 64014984 -57828872 + MLT1J LTR MaLR 231 367 -145 2 1073 213 39 0 0 chr11 64015306 64015332 -57828524 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1073 2249 172 100 8 chr11 64015345 64015779 -57828077 + RLTR20B3 LTR ERVK 1 471 -106 2 1073 456 19 0 0 chr11 64015779 64015832 -57828024 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1073 2249 172 100 8 chr11 64015832 64015925 -57827931 + RLTR20B3 LTR ERVK 472 576 -1 2 1073 880 311 53 23 chr11 64016410 64016939 -57826917 - L1MD2 LINE L1 -3097 3447 2903 3 1073 628 154 8 8 chr11 64016939 64017063 -57826793 + C-rich Low_complexity Low_complexity 1 124 0 3 1073 1927 108 3 26 chr11 64017145 64017448 -57826408 + MTB_Mm LTR MaLR 112 407 0 3 1073 581 339 164 48 chr11 64017935 64018710 -57825146 - L1MD2 LINE L1 -5487 1060 196 3 1073 484 252 35 35 chr11 64019344 64019488 -57824368 + B1F SINE Alu 1 144 -5 3 1073 449 100 25 0 chr11 64019491 64019571 -57824285 + (CCAA)n Simple_repeat Simple_repeat 2 83 0 3 1073 367 277 20 10 chr11 64020513 64020615 -57823241 + PB1D10 SINE Alu 2 104 -13 3 1073 714 43 0 0 chr11 64021318 64021412 -57822444 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1073 406 269 11 0 chr11 64021674 64021767 -57822089 + RSINE1 SINE B4 72 165 0 3 1073 581 209 60 20 chr11 64021952 64022103 -57821753 - MER5A DNA MER1_type -1 188 32 3 1073 194 192 0 19 chr11 64022502 64022555 -57821301 + A-rich Low_complexity Low_complexity 1 52 0 3 1073 297 20 60 0 chr11 64022830 64022880 -57820976 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 4 1073 474 18 0 0 chr11 64023500 64023555 -57820301 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 1073 261 344 48 0 chr11 64023879 64024004 -57819852 - MER63D DNA AcHobo -652 409 279 4 1073 3466 55 53 11 chr11 64025284 64025739 -57818117 + L1Md_F2 LINE L1 6108 6581 -1 4 1073 287 261 0 0 chr11 64025774 64025839 -57818017 + PB1D10 SINE Alu 45 109 -8 4 1073 336 277 14 33 chr11 64025859 64025981 -57817875 + ID4_ SINE ID 8 131 -21 4 1073 237 300 0 0 chr11 64026400 64026470 -57817386 + CT-rich Low_complexity Low_complexity 3 72 0 4 1073 1779 212 116 35 chr11 64026472 64026980 -57816876 - RMER15 LTR ERVL 0 575 27 4 1073 303 224 0 0 chr11 64027039 64027097 -57816759 - RMER15 LTR ERVL -515 60 3 4 1073 230 350 100 0 chr11 64027142 64027262 -57816594 + MTEa LTR MaLR 20 151 -208 4 1073 310 231 97 21 chr11 64027334 64027427 -57816429 + MTEa LTR MaLR 254 353 -26 4 1073 314 317 148 0 chr11 64027453 64027683 -57816173 - L1MA8 LINE L1 -12 6279 6016 4 1073 267 326 28 23 chr11 64027736 64027912 -57815944 - L1MB8 LINE L1 -3 6175 5999 5 1073 975 256 116 49 chr11 64028121 64028344 -57815512 - L1MB8 LINE L1 -245 5933 5681 5 1073 522 0 0 0 chr11 64028344 64028402 -57815454 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1073 975 256 116 49 chr11 64028402 64028687 -57815169 - L1MB8 LINE L1 -498 5680 5392 5 1073 421 286 65 21 chr11 64028695 64028881 -57814975 + Ricksha_c DNA MuDR 355 548 -1500 5 1073 180 158 0 0 chr11 64029071 64029109 -57814747 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 5 1073 1430 193 158 8 chr11 64029500 64029855 -57814001 + MTD LTR MaLR 11 418 -1 5 1073 4280 241 61 26 chr11 64031326 64032471 -57811385 - Lx9 LINE L1 -1 7643 6459 5 1073 311 244 18 41 chr11 64032495 64032666 -57811190 + (TTATA)n Simple_repeat Simple_repeat 3 169 0 5 1073 1284 27 0 0 chr11 64032974 64033121 -57810735 + B1_Mus1 SINE Alu 1 147 -1 5 1073 366 23 0 0 chr11 64033123 64033166 -57810690 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1073 204 231 0 0 chr11 64033273 64033325 -57810531 + GA-rich Low_complexity Low_complexity 1 52 0 5 1073 409 287 73 52 chr11 64033750 64033886 -57809970 + RSINE1 SINE B4 27 165 0 6 1073 498 278 106 0 chr11 64034077 64034257 -57809599 - MER74A LTR ERVL -276 282 84 6 1073 699 302 52 79 chr11 64034293 64034660 -57809196 - ORR1E LTR MaLR 0 359 3 6 1073 233 299 104 0 chr11 64035597 64035674 -57808182 - L1M5 LINE L1 -659 5514 5430 6 1073 543 53 0 0 chr11 64036784 64036859 -57806997 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1073 979 135 0 0 chr11 64036871 64037019 -57806837 - B1_Mus1 SINE Alu 0 148 1 6 1073 760 267 14 2 chr11 64037207 64037410 -57806446 - B3A SINE B2 -5 211 5 6 1073 251 164 16 0 chr11 64037984 64038045 -57805811 + T-rich Low_complexity Low_complexity 4 65 0 6 1073 2338 164 18 85 chr11 64038079 64038573 -57805283 - RMER6B LTR ERVK 0 461 1 6 1073 2159 193 92 8 chr11 64038849 64039329 -57804527 - Lx9 LINE L1 -168 7476 6957 6 1073 9988 218 49 43 chr11 64039330 64041493 -57802363 - L1Md_T LINE L1 -667 5915 3660 7 1073 423 0 0 0 chr11 64041493 64041540 -57802316 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1073 9988 216 50 43 chr11 64041540 64042239 -57801617 - L1Md_T LINE L1 -2188 3659 3000 7 1073 4438 205 65 8 chr11 64042245 64043633 -57800223 - L1Md_T LINE L1 -3511 2336 871 7 1073 360 333 67 0 chr11 64045862 64046072 -57797784 - MIRb SINE MIR -10 258 35 7 1073 242 348 0 21 chr11 64046683 64046777 -57797079 + (TG)n Simple_repeat Simple_repeat 1 92 0 7 1073 21 36 0 0 chr11 64046833 64046861 -57796995 + AT_rich Low_complexity Low_complexity 1 28 0 7 1073 502 15 15 15 chr11 64047342 64047410 -57796446 + (TTA)n Simple_repeat Simple_repeat 1 68 0 7 1073 681 297 14 34 chr11 64048125 64048334 -57795522 - B3 SINE B2 -10 206 2 7 1073 23 68 0 0 chr11 64049112 64049156 -57794700 + AT_rich Low_complexity Low_complexity 1 44 0 7 1073 450 0 0 0 chr11 64050924 64050974 -57792882 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 7 1073 2244 277 56 16 chr11 64052100 64052730 -57791126 + Lx9 LINE L1 6341 6995 -649 7 1073 985 192 285 0 chr11 64052832 64053141 -57790715 - MTD LTR MaLR -21 398 2 8 1073 617 289 69 53 chr11 64053152 64053513 -57790343 + Lx9 LINE L1 7277 7643 -1 7 1073 666 251 47 6 chr11 64053869 64054041 -57789815 + B3A SINE B2 4 182 -16 8 1073 249 208 14 27 chr11 64054411 64054485 -57789371 + T-rich Low_complexity Low_complexity 5 77 0 8 1073 1240 274 42 16 chr11 64056207 64056585 -57787271 - MLT1B LTR MaLR 0 390 3 8 1073 250 246 0 0 chr11 64056693 64056762 -57787094 + Tigger5 DNA MER2_type 2170 2238 -168 8 1073 664 211 25 50 chr11 64056765 64056925 -57786931 - RSINE1 SINE B4 0 165 10 8 1073 248 313 7 63 chr11 64056933 64057076 -57786780 + Tigger5 DNA MER2_type 2230 2364 -42 8 1073 3989 149 47 5 chr11 64057079 64057740 -57786116 - RLTR17 LTR ERVK -3 689 1 8 1073 306 73 0 0 chr11 64058361 64058402 -57785454 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1073 1044 170 77 0 chr11 64059911 64060105 -57783751 + B3 SINE B2 1 209 -7 8 1073 1077 14 22 0 chr11 64060129 64060268 -57783588 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 8 1073 992 101 0 12 chr11 64060350 64060511 -57783345 + (TTCTG)n Simple_repeat Simple_repeat 3 161 0 9 1073 304 308 75 30 chr11 64060511 64060712 -57783144 - L1M5 LINE L1 -1332 4814 4605 9 1073 290 321 0 52 chr11 64060712 64060827 -57783029 + PB1D10 SINE Alu 1 109 -8 9 1073 201 39 0 0 chr11 64060832 64060858 -57782998 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 9 1073 425 316 112 62 chr11 64060883 64061285 -57782571 - L1M5 LINE L1 -1542 4604 4183 9 1073 1207 8 37 11 chr11 64061600 64061871 -57781985 + (TG)n Simple_repeat Simple_repeat 1 277 0 9 1073 603 286 31 36 chr11 64061958 64062183 -57781673 - B4 SINE B4 -67 225 2 9 1073 687 11 33 0 chr11 64062212 64062304 -57781552 + (TG)n Simple_repeat Simple_repeat 1 95 0 9 1073 336 318 116 5 chr11 64062804 64063019 -57780837 - L1M5 LINE L1 -533 5591 5353 9 1073 212 326 47 0 chr11 64063591 64063677 -57780179 + B4A SINE B4 78 167 -125 9 1073 479 256 11 0 chr11 64063604 64063713 -57780143 + PB1D10 SINE Alu 7 127 0 9 1073 252 174 35 11 chr11 64063735 64063810 -57780046 + GA-rich Low_complexity Low_complexity 2 79 0 1 1073 1191 107 0 0 chr11 64063810 64063988 -57779868 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 1 1073 252 174 35 11 chr11 64063988 64063999 -57779857 + polypurine Low_complexity Low_complexity 80 90 0 1 1073 940 268 87 7 chr11 64064065 64064340 -57779516 + ORR1D2 LTR MaLR 70 366 -4 1 1073 22 0 0 0 chr11 64064619 64064641 -57779215 + AT_rich Low_complexity Low_complexity 1 22 0 1 1073 921 142 0 0 chr11 64064641 64064796 -57779060 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1073 422 247 11 0 chr11 64064810 64064903 -57778953 - RSINE1 SINE B4 -69 96 3 1 1073 753 272 0 6 chr11 64064982 64065163 -57778693 + B3 SINE B2 4 183 -33 1 1073 834 98 0 0 chr11 64065193 64065315 -57778541 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1 1073 232 48 23 23 chr11 64067017 64067060 -57776796 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1073 389 265 52 52 chr11 64068034 64068189 -57775667 + MLT1A LTR MaLR 49 203 -171 1 1073 490 289 234 5 chr11 64068449 64068821 -57775035 - MLT2B4 LTR ERVL -78 478 22 1 1073 881 273 98 95 chr11 64068991 64069529 -57774327 + RLTR18 LTR ERVK 33 572 -44 1 1073 406 289 159 35 chr11 64069603 64069886 -57773970 + L2a LINE L2 3103 3420 -6 1 1073 186 43 0 0 chr11 64070620 64070643 -57773213 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1073 441 277 61 8 chr11 64070653 64070784 -57773072 - RSINE1 SINE B4 -24 141 4 1 1073 302 324 14 14 chr11 64071021 64071162 -57772694 + L1MC1 LINE L1 6163 6303 -30 1 1073 275 318 67 71 chr11 64072228 64072438 -57771418 + ORR1E LTR MaLR 24 232 -127 1 1073 877 302 76 17 chr11 64072592 64073000 -57770856 - MER34 LTR ERV1 -31 511 80 1 1073 257 75 25 0 chr11 64073275 64073315 -57770541 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1073 324 0 0 0 chr11 64073809 64073845 -57770011 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1073 600 129 0 0 chr11 64074489 64074613 -57769243 + (GA)n Simple_repeat Simple_repeat 2 125 0 1 1073 27 62 0 0 chr11 64074727 64074775 -57769081 + AT_rich Low_complexity Low_complexity 1 48 0 1 1073 1370 228 97 19 chr11 64076296 64076685 -57767171 + MTD LTR MaLR 1 405 -14 1 1073 4357 163 29 16 chr11 64077821 64078612 -57765244 + Lx3C LINE L1 6158 6958 -18 1 1073 267 103 0 0 chr11 64078772 64078811 -57765045 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1 1073 222 360 26 0 chr11 64079238 64079352 -57764504 + L2 LINE L2 2727 2843 -576 1 1073 314 261 56 2 chr11 64079691 64079830 -57764026 - MIR SINE MIR -23 245 90 1 1073 432 0 0 0 chr11 64080716 64080764 -57763092 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1073 1207 55 7 0 chr11 64082500 64082645 -57761211 + B1_Mus1 SINE Alu 3 148 0 1 1073 1567 160 44 80 chr11 64083453 64083814 -57760042 - ORR1D1 LTR MaLR -26 353 1 1 1073 394 234 26 26 chr11 64083862 64083976 -57759880 + MLT1A1 LTR MaLR 293 406 -2 1 1073 331 357 63 56 chr11 64084510 64084780 -57759076 - L1MDa LINE L1 -5562 1071 800 1 1073 183 42 0 0 chr11 64084972 64084996 -57758860 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1073 447 19 0 0 chr11 64085505 64085557 -57758299 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1073 333 68 0 0 chr11 64085557 64085600 -57758256 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1073 1608 190 157 3 chr11 64085826 64086190 -57757666 - MTC LTR MaLR -1 420 1 1 1073 236 361 61 55 chr11 64086543 64086707 -57757149 - MLT1E2 LTR MaLR -106 521 357 1 1073 1196 139 15 5 chr11 64086895 64087097 -57756759 + RMER15 LTR ERVL 1 204 -371 1 1073 198 0 0 0 chr11 64088372 64088394 -57755462 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1073 279 272 167 0 chr11 64089934 64090048 -57753808 + MER20 DNA MER1_type 48 180 -39 1 1073 205 287 116 43 chr11 64090509 64090673 -57753183 + L2 LINE L2 2435 2610 -809 1 1073 198 103 0 0 chr11 64092048 64092077 -57751779 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1073 240 35 0 0 chr11 64092596 64092625 -57751231 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1 134 8581 114 36 19 chr11 64093063 64094549 -57749307 + Lx3C LINE L1 5457 6974 -2 1 1074 600 14 0 0 chr11 64094555 64094624 -57749232 + (CTA)n Simple_repeat Simple_repeat 1 69 0 1 1074 196 53 26 26 chr11 64095202 64095241 -57748615 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 1 1074 23 68 0 0 chr11 64095719 64095763 -57748093 + AT_rich Low_complexity Low_complexity 1 44 0 1 1074 585 330 139 48 chr11 64095763 64095814 -57748042 + MLT2B2 LTR ERVL 2 51 -464 1 1074 1180 200 267 9 chr11 64095814 64096147 -57747709 + MTD LTR MaLR 1 419 0 1 1074 585 330 139 48 chr11 64096147 64096556 -57747300 + MLT2B2 LTR ERVL 52 504 -11 1 1074 1232 130 33 0 chr11 64096657 64096841 -57747015 + B2_Mm2 SINE B2 3 192 -3 1 1074 241 347 171 22 chr11 64097121 64097566 -57746290 + L2 LINE L2 1586 2096 -1323 1 1074 199 338 71 53 chr11 64097681 64097850 -57746006 + MER5B DNA MER1_type 6 177 -1 1 1074 276 102 0 0 chr11 64098127 64098176 -57745680 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1074 634 270 181 14 chr11 64098474 64098767 -57745089 + MLT2B4 LTR ERVL 5 346 -210 1 1074 744 252 0 6 chr11 64098784 64098940 -57744916 - B3 SINE B2 -61 155 1 1 1074 267 264 56 0 chr11 64099134 64099206 -57744650 - PB1D10 SINE Alu -27 90 15 1 1074 261 284 97 65 chr11 64099255 64099379 -57744477 - B1F1 SINE Alu -2 147 20 1 1074 517 247 95 18 chr11 64099521 64099690 -57744166 - B3A SINE B2 -16 182 1 1 1074 978 283 56 65 chr11 64100383 64100847 -57743009 - MER82 DNA MER2_type -182 471 12 1 1074 488 305 69 67 chr11 64100983 64101237 -57742619 - B4A SINE B4 -25 267 1 1 1074 396 91 0 0 chr11 64101460 64101526 -57742330 + (T)n Simple_repeat Simple_repeat 1 66 0 1 1074 183 289 100 50 chr11 64103745 64103865 -57739991 - MIR3 SINE MIR -51 157 32 1 1074 2467 179 91 13 chr11 64104018 64104546 -57739310 + RMER4B LTR ERVK 17 585 0 1 1074 539 296 30 4 chr11 64104628 64104841 -57739015 - B3A SINE B2 0 216 1 1 1074 477 0 0 0 chr11 64105045 64105098 -57738758 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1074 644 185 51 42 chr11 64106483 64106645 -57737211 - MTD LTR MaLR -15 404 245 1 1074 508 245 86 190 chr11 64106665 64107013 -57736843 - MTD LTR MaLR -89 330 19 1 1074 432 0 0 0 chr11 64107017 64107065 -57736791 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1074 232 244 12 12 chr11 64107352 64107435 -57736421 - MER33 DNA MER1_type -36 288 206 1 1074 460 254 83 15 chr11 64107510 64107642 -57736214 - ID_B1 SINE B4 0 224 84 1 1074 235 196 22 0 chr11 64107613 64107659 -57736197 - MT2B2 LTR ERVL -296 288 242 1 1074 760 304 51 19 chr11 64107736 64108048 -57735808 - MER2 DNA MER2_type -22 323 2 1 1074 2710 110 14 29 chr11 64108093 64108506 -57735350 + MTB_Mm LTR MaLR 1 407 0 1 1074 1833 202 47 20 chr11 64108546 64108954 -57734902 + MTD LTR MaLR 1 419 0 1 1074 186 385 23 23 chr11 64109115 64109248 -57734608 + MIR SINE MIR 21 153 -109 1 1074 1165 176 13 13 chr11 64109700 64109925 -57733931 - URR1B DNA MER1_type 0 225 1 1 1074 231 295 0 79 chr11 64110898 64111012 -57732844 - MLT1A LTR MaLR -249 125 21 1 1074 1011 259 10 59 chr11 64112060 64112364 -57731492 - B4 SINE B4 -1 291 3 1 1074 36103 35 1 0 chr11 64112648 64118489 -57725367 + L1Md_T LINE L1 1 5589 -297 1 1074 9072 9 0 0 chr11 64118489 64119485 -57724371 + L1Md_T LINE L1 5590 6585 0 1 1074 620 157 19 19 chr11 64119780 64119942 -57723914 + (CATA)n Simple_repeat Simple_repeat 4 165 0 1 1074 2003 176 33 31 chr11 64121053 64121445 -57722411 - MTC LTR MaLR 0 421 29 1 1074 229 328 110 16 chr11 64122517 64122644 -57721212 - MER44B DNA MER2_type -383 167 29 1 1074 234 0 0 0 chr11 64124879 64124905 -57718951 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1074 199 268 42 0 chr11 64125391 64125462 -57718394 - L2b LINE L2 -230 3145 3072 1 1074 999 189 75 0 chr11 64125859 64126060 -57717796 - B3 SINE B2 0 216 1 1 1074 526 266 117 35 chr11 64126209 64126466 -57717390 + B4A SINE B4 3 280 -12 1 1074 428 377 20 0 chr11 64126502 64126648 -57717208 - RSINE1 SINE B4 -16 149 1 1 1074 865 113 7 63 chr11 64127475 64127617 -57716239 + B1_Mus1 SINE Alu 1 134 -14 1 1074 695 254 24 111 chr11 64128318 64128526 -57715330 + B3 SINE B2 2 192 -24 1 1074 308 256 110 81 chr11 64128530 64128666 -57715190 - MLT1A1 LTR MaLR 0 408 235 1 1074 195 42 0 0 chr11 64129274 64129298 -57714558 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1074 358 314 17 17 chr11 64129500 64129620 -57714236 + RSINE1 SINE B4 22 141 -24 1 1074 369 0 0 0 chr11 64129622 64129663 -57714193 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1074 429 70 0 0 chr11 64129754 64129811 -57714045 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1074 22 0 0 0 chr11 64129811 64129833 -57714023 + AT_rich Low_complexity Low_complexity 1 22 0 1 1074 189 147 0 0 chr11 64132048 64132082 -57711774 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 1 1074 553 315 85 48 chr11 64132110 64132440 -57711416 + Ricksha_c DNA MuDR 435 776 -1272 1 1074 244 196 19 76 chr11 64133821 64133926 -57709930 + MER34 LTR ERV1 372 470 -72 1 1074 23 33 0 0 chr11 64134184 64134214 -57709642 + AT_rich Low_complexity Low_complexity 1 30 0 1 1074 367 216 80 0 chr11 64136079 64136118 -57707738 + RSINE1 SINE B4 3 41 -124 2 1074 210 105 0 0 chr11 64136118 64136156 -57707700 + (CCCTAA)n Simple_repeat Simple_repeat 3 40 0 2 1074 367 216 80 0 chr11 64136156 64136204 -57707652 + RSINE1 SINE B4 42 95 -70 2 1074 387 0 0 0 chr11 64136207 64136250 -57707606 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1074 22 0 0 0 chr11 64136397 64136419 -57707437 + AT_rich Low_complexity Low_complexity 1 22 0 2 1074 593 274 31 13 chr11 64136449 64136608 -57707248 - RSINE1 SINE B4 0 165 4 2 1074 446 262 39 23 chr11 64136643 64136772 -57707084 - RSINE1 SINE B4 -31 134 4 2 1074 309 278 26 53 chr11 64137555 64137669 -57706187 + PB1D10 SINE Alu 1 111 -6 2 1074 200 320 0 0 chr11 64137824 64137874 -57705982 + G-rich Low_complexity Low_complexity 4 53 0 2 1074 186 306 118 0 chr11 64138314 64138399 -57705457 + MIR3 SINE MIR 111 205 -3 2 1074 312 27 0 0 chr11 64138471 64138508 -57705348 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1074 323 106 0 0 chr11 64139414 64139461 -57704395 - HAL1-3A_ME LINE L1 -833 2025 1979 2 1074 313 209 43 85 chr11 64139748 64139842 -57704014 - B4A SINE B4 -198 94 5 2 1074 327 49 0 0 chr11 64140602 64140643 -57703213 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1074 24 0 0 0 chr11 64142214 64142238 -57701618 + AT_rich Low_complexity Low_complexity 1 24 0 2 1074 370 216 10 58 chr11 64142241 64142344 -57701512 - PB1D10 SINE Alu -8 109 12 2 1074 673 320 74 8 chr11 64142352 64142655 -57701201 - L1MA6 LINE L1 -45 6246 5928 2 1074 436 219 56 37 chr11 64142678 64142835 -57701021 - L1MA6 LINE L1 -323 5833 5671 2 1074 267 231 0 0 chr11 64142842 64142894 -57700962 - L1_Mur3 LINE L1 -327 5553 5502 2 1074 1068 103 0 0 chr11 64143203 64143359 -57700497 + (GAA)n Simple_repeat Simple_repeat 1 156 0 2 1074 400 331 49 24 chr11 64144388 64144552 -57699304 + MTEa LTR MaLR 28 195 -184 2 1074 368 299 34 13 chr11 64145571 64145720 -57698136 + MLT1H LTR MaLR 41 192 -357 2 1074 25 0 0 0 chr11 64146937 64146962 -57696894 + AT_rich Low_complexity Low_complexity 1 25 0 2 1074 239 302 0 0 chr11 64148109 64148172 -57695684 + MER2 DNA MER2_type 283 345 0 2 1074 341 312 101 75 chr11 64148213 64148480 -57695376 - B4 SINE B4 -17 275 2 2 1074 252 0 0 0 chr11 64148492 64148520 -57695336 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1074 432 290 98 20 chr11 64150119 64150323 -57693533 - Kanga2_a DNA Tc2 -603 285 66 2 1074 188 34 0 33 chr11 64150365 64150395 -57693461 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1074 2335 146 41 5 chr11 64150428 64150821 -57693035 + MTC LTR MaLR 1 407 -14 2 1074 798 144 0 0 chr11 64150824 64151004 -57692852 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1074 189 0 0 0 chr11 64151004 64151025 -57692831 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1074 336 48 0 0 chr11 64153777 64153819 -57690037 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1074 353 373 16 46 chr11 64153824 64154018 -57689838 - B4 SINE B4 -4 288 101 2 1074 467 190 0 17 chr11 64154028 64154146 -57689710 + CT-rich Low_complexity Low_complexity 2 117 0 2 1074 245 316 48 54 chr11 64154235 64154382 -57689474 - MER2 DNA MER2_type -119 226 81 2 1074 308 327 50 57 chr11 64154495 64154654 -57689202 - MER2B DNA MER2_type -171 165 8 2 1074 237 108 0 0 chr11 64157966 64158003 -57685853 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1074 378 335 52 48 chr11 64158221 64158472 -57685384 + RMER15 LTR ERVL 311 562 -13 2 1074 851 142 0 7 chr11 64158494 64158643 -57685213 + (GAA)n Simple_repeat Simple_repeat 2 149 0 2 1074 548 301 45 120 chr11 64159321 64159494 -57684362 + B3A SINE B2 1 168 -30 2 1074 378 0 0 0 chr11 64159494 64159536 -57684320 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1074 223 301 45 120 chr11 64159536 64159562 -57684294 + B2_Mm1a SINE B2 159 184 -9 2 1074 3210 181 122 25 chr11 64160087 64160848 -57683008 + RMER19B LTR ERVK 56 890 -12 2 1074 634 262 7 0 chr11 64162026 64162167 -57681689 + B3A SINE B2 1 142 -56 2 1074 191 325 62 12 chr11 64164270 64164351 -57679505 - L2b LINE L2 -173 3202 3118 2 1074 551 281 70 152 chr11 64164455 64164721 -57679135 + L1MA5 LINE L1 5804 6039 -261 2 1074 1165 96 6 6 chr11 64164721 64164900 -57678956 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 1074 551 281 70 152 chr11 64164900 64165174 -57678682 + L1MA5 LINE L1 6040 6300 0 2 1074 715 255 87 101 chr11 64165908 64166266 -57677590 + MTE2b LTR MaLR 16 368 -11 2 1074 3322 21 42 0 chr11 64166337 64166717 -57677139 + MTA_Mm LTR MaLR 1 396 0 2 1074 609 90 0 0 chr11 64166822 64166911 -57676945 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 2 1074 2383 268 106 10 chr11 64167212 64168099 -57675757 - RCHARR1 DNA MER1_type 0 974 3 2 1074 232 261 29 0 chr11 64168763 64168832 -57675024 - RMER1C Other Other -12 1330 1260 2 1074 2382 260 39 21 chr11 64168855 64169520 -57674336 - Lx9 LINE L1 -461 7183 6507 2 1074 432 0 0 0 chr11 64169644 64169692 -57674164 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1074 3726 152 29 71 chr11 64170032 64170754 -57673102 - RLTR17 LTR ERVK 0 692 1 2 1074 25 0 0 0 chr11 64170762 64170787 -57673069 + AT_rich Low_complexity Low_complexity 1 25 0 2 1074 224 100 0 24 chr11 64171475 64171516 -57672340 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1074 228 333 0 0 chr11 64171641 64171707 -57672149 + ID4_ SINE ID 17 82 -1 2 1074 319 295 75 40 chr11 64171898 64172071 -57671785 - ORR1E LTR MaLR -137 222 44 2 1074 469 289 172 35 chr11 64172270 64172589 -57671267 - MLT1A0 LTR MaLR -2 363 1 2 1074 387 0 0 0 chr11 64172654 64172697 -57671159 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1074 406 135 26 39 chr11 64172707 64172784 -57671072 - B1_Mur4 SINE Alu -7 143 68 2 1074 318 258 33 22 chr11 64172788 64172879 -57670977 - RLTR23 LTR ERV1 0 430 339 2 1074 328 254 0 0 chr11 64173285 64173348 -57670508 - B1_Mur4 SINE Alu -85 65 3 2 1074 245 207 17 0 chr11 64173371 64173429 -57670427 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 2 1074 2369 290 92 22 chr11 64173431 64174369 -57669487 + Lx8 LINE L1 6454 7456 -17 2 1074 424 417 15 19 chr11 64174449 64174720 -57669136 + B4A SINE B4 19 288 -4 2 1074 3311 49 2 7 chr11 64175472 64175886 -57667970 + L1Md_F2 LINE L1 6171 6582 0 2 1074 266 299 99 43 chr11 64176275 64176436 -57667420 + MIR SINE MIR 23 192 -70 2 1074 528 93 0 0 chr11 64176743 64176818 -57667038 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 2 1074 568 333 13 0 chr11 64176821 64176977 -57666879 - RSINE1 SINE B4 -2 163 6 2 1074 507 301 81 26 chr11 64177885 64178229 -57665627 + Tigger15a DNA TcMar 295 657 -58 2 1074 456 253 68 0 chr11 64178796 64178942 -57664914 + MER2 DNA MER2_type 93 248 -97 2 1074 245 317 73 31 chr11 64182273 64182465 -57661391 + Lx8 LINE L1 7272 7471 -2 2 1074 764 186 0 12 chr11 64182549 64182712 -57661144 + CT-rich Low_complexity Low_complexity 3 163 0 2 1074 216 97 0 0 chr11 64183726 64183757 -57660099 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1074 681 234 41 6 chr11 64184611 64184804 -57659052 - B3A SINE B2 -4 212 11 2 1074 383 300 86 0 chr11 64185320 64185460 -57658396 + MamRep605 Unknown Unknown 491 642 -234 2 1074 875 313 57 35 chr11 64186164 64186654 -57657202 + RMER5 LTR ERV1 23 523 -11 2 1074 363 98 0 0 chr11 64186842 64186903 -57656953 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1074 765 271 144 12 chr11 64186933 64187183 -57656673 - B4A SINE B4 -8 284 2 2 1074 5813 102 12 0 chr11 64187202 64188029 -57655827 - L1_Mus3 LINE L1 -2 6636 5800 2 1074 16156 55 1 6 chr11 64188034 64189896 -57653960 - L1Md_T LINE L1 0 6582 4732 2 1074 207 0 0 0 chr11 64189896 64189919 -57653937 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1074 16156 82 3 12 chr11 64189919 64190942 -57652914 - L1Md_T LINE L1 -1152 4731 3716 2 1074 563 319 17 40 chr11 64192098 64192274 -57651582 + B3A SINE B2 1 172 -26 2 1074 233 308 31 93 chr11 64192374 64192503 -57651353 + LTR48 LTR ERV1 3 123 -664 2 1074 446 0 19 0 chr11 64192518 64192572 -57651284 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1074 791 316 33 45 chr11 64192783 64193118 -57650738 + LTR48 LTR ERV1 455 785 -2 2 1074 315 311 71 26 chr11 64193223 64193378 -57650478 + L1MCa LINE L1 272 433 -6075 2 1074 268 281 31 20 chr11 64193850 64193948 -57649908 + L1M2 LINE L1 5203 5301 -842 2 1074 290 115 19 37 chr11 64193950 64194004 -57649852 + MTE2a LTR MaLR 1 54 -325 2 1074 603 165 0 0 chr11 64194005 64194114 -57649742 + (TA)n Simple_repeat Simple_repeat 1 109 0 2 1074 1106 95 0 0 chr11 64194114 64194261 -57649595 - B1_Mus1 SINE Alu -1 147 1 2 1074 413 325 84 58 chr11 64194280 64194541 -57649315 + MTE2a LTR MaLR 40 307 -72 2 1074 879 242 93 10 chr11 64194543 64194843 -57649013 - L1MA8 LINE L1 -47 6244 5920 2 1074 315 104 0 0 chr11 64195511 64195559 -57648297 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1074 1696 188 88 61 chr11 64196581 64196757 -57647099 + MTC LTR MaLR 2 210 -211 2 1074 1133 95 0 0 chr11 64196757 64196905 -57646951 + B1_Mus1 SINE Alu 1 148 0 2 1074 1696 188 88 61 chr11 64196905 64197039 -57646817 + MTC LTR MaLR 211 324 -97 2 1074 2093 158 91 3 chr11 64197039 64197401 -57646455 - ORR1B1 LTR MaLR 0 394 1 2 1074 1696 188 88 61 chr11 64197401 64197497 -57646359 + MTC LTR MaLR 325 420 -1 2 1074 287 274 74 19 chr11 64197987 64198095 -57645761 - MIR3 SINE MIR -1 207 94 2 1074 2033 144 14 14 chr11 64198743 64199101 -57644755 - RMER4A LTR ERVK 0 466 109 2 1074 2284 174 27 14 chr11 64199345 64199758 -57644098 + MTC LTR MaLR 3 420 -1 2 1074 249 274 17 25 chr11 64200334 64200454 -57643402 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 1074 390 206 134 0 chr11 64201761 64201858 -57641998 + B4 SINE B4 4 113 -179 2 1074 432 0 0 0 chr11 64201970 64202018 -57641838 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1074 768 77 0 0 chr11 64202018 64202121 -57641735 + (GA)n Simple_repeat Simple_repeat 2 105 0 3 1074 344 313 129 38 chr11 64202289 64202661 -57641195 + L1ME2 LINE L1 5526 5931 -233 3 1074 319 221 125 23 chr11 64202822 64202910 -57640946 - PB1D10 SINE Alu 0 117 21 3 1074 281 250 98 8 chr11 64203603 64203736 -57640120 + L2a LINE L2 3004 3148 -278 3 1074 415 299 150 40 chr11 64204321 64204568 -57639288 - B4 SINE B4 -16 276 3 3 1074 351 0 0 0 chr11 64205517 64205556 -57638300 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1074 422 119 0 0 chr11 64205748 64205815 -57638041 - ORR1D1 LTR MaLR -4 370 304 3 1074 2259 62 0 7 chr11 64205815 64206092 -57637764 - L1_Mus1 LINE L1 -145 6422 6148 3 1074 983 67 0 0 chr11 64206115 64206250 -57637606 + L1_Mus1 LINE L1 6433 6567 0 3 1074 1314 184 122 20 chr11 64206268 64206572 -57637284 - ORR1D1 LTR MaLR -39 335 1 3 1074 6829 183 20 39 chr11 64206576 64207966 -57635890 - ORR1D1-int LTR MaLR -4 1366 3 3 1074 1405 221 99 45 chr11 64207966 64208320 -57635536 - ORR1D1 LTR MaLR 0 374 1 3 1074 460 335 16 64 chr11 64208370 64208619 -57635237 + MLT1B LTR MaLR 154 390 0 3 1074 477 319 46 106 chr11 64208764 64209066 -57634790 + B4A SINE B4 1 284 -8 3 1074 733 158 13 7 chr11 64209117 64209270 -57634586 + GA-rich Low_complexity Low_complexity 4 157 0 3 1074 232 216 169 39 chr11 64210913 64211043 -57632813 - MIR SINE MIR -37 225 79 3 1074 291 289 80 86 chr11 64211073 64211442 -57632414 + ORR1E LTR MaLR 1 379 0 3 1074 181 307 65 54 chr11 64212553 64212646 -57631210 - MIRb SINE MIR -154 114 21 3 1074 684 196 43 27 chr11 64212680 64212864 -57630992 + B3A SINE B2 3 189 -9 3 1074 181 354 61 7 chr11 64213630 64213778 -57630078 - MER5A DNA MER1_type -26 163 8 3 1074 387 0 0 0 chr11 64216025 64216068 -57627788 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1074 235 226 0 51 chr11 64217173 64217271 -57626585 + (TAGGG)n Simple_repeat Simple_repeat 3 95 0 3 1074 635 162 44 107 chr11 64217392 64217551 -57626305 - B1_Mur2 SINE Alu 0 149 1 3 1074 310 262 25 0 chr11 64218150 64218230 -57625626 + Tigger7 DNA MER2_type 17 98 -2393 3 1074 8037 54 11 5 chr11 64218404 64219876 -57623980 - L1Md_F2 LINE L1 -12 6570 5090 3 1074 615 51 0 0 chr11 64220638 64220717 -57623139 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 3 1074 207 0 0 0 chr11 64220718 64220741 -57623115 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 1074 864 104 6 2 chr11 64220748 64220887 -57622969 - B1_Mus1 SINE Alu 0 149 5 3 1074 752 269 144 7 chr11 64220970 64221247 -57622609 + Tigger7 DNA MER2_type 8 322 -2169 3 1074 993 252 39 42 chr11 64221287 64221573 -57622283 - ORR1E LTR MaLR -73 286 2 3 1074 367 278 58 43 chr11 64221639 64221827 -57622029 + Tigger7 DNA MER2_type 2204 2394 -97 3 1074 522 0 0 0 chr11 64222035 64222093 -57621763 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 3 1074 351 65 0 0 chr11 64222093 64222139 -57621717 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1074 456 338 0 7 chr11 64222146 64222286 -57621570 - RSINE1 SINE B4 -2 163 25 3 1074 209 234 94 0 chr11 64222584 64222648 -57621208 + MIRb SINE MIR 110 179 -89 3 1074 240 314 152 13 chr11 64222796 64222954 -57620902 + Tigger5 DNA MER2_type 36 215 -2191 3 1074 246 338 29 22 chr11 64222950 64223086 -57620770 + Tigger5 DNA MER2_type 2270 2406 0 3 1074 672 321 59 13 chr11 64223100 64223403 -57620453 - Charlie13b DNA Charlie -41 471 155 3 1074 913 178 29 6 chr11 64223776 64223951 -57619905 + B3 SINE B2 32 210 -6 3 1074 1796 178 76 3 chr11 64224225 64224612 -57619244 + MTD LTR MaLR 1 405 -14 3 134 580 288 134 45 chr11 64225040 64225574 -57618282 + L1ME1 LINE L1 5581 6160 -19 3 1075 666 285 14 3 chr11 64225575 64225773 -57618083 + B3A SINE B2 13 216 0 3 1075 513 0 0 0 chr11 64226791 64226848 -57617008 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1075 614 297 58 21 chr11 64227340 64227529 -57616327 + MLT1A1 LTR MaLR 77 272 -136 3 1075 228 197 29 43 chr11 64228167 64228236 -57615620 + MLT1A1 LTR MaLR 329 396 -12 3 1075 226 362 97 22 chr11 64228249 64228475 -57615381 + L2 LINE L2 2199 2441 -978 3 1075 229 292 127 52 chr11 64228861 64229128 -57614728 + L2 LINE L2 2563 2849 -570 3 1075 1477 231 79 147 chr11 64229861 64230516 -57613340 - RMER19C LTR ERVK 0 611 1 3 1075 276 30 0 0 chr11 64231816 64231849 -57612007 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1075 459 269 0 27 chr11 64231850 64231961 -57611895 - RSINE1 SINE B4 -29 136 29 3 1075 23 33 0 0 chr11 64233019 64233049 -57610807 + AT_rich Low_complexity Low_complexity 1 30 0 3 1075 360 308 103 56 chr11 64233976 64234210 -57609646 - MLT1A0 LTR MaLR -57 308 64 3 1075 303 161 0 0 chr11 64235241 64235297 -57608559 + CT-rich Low_complexity Low_complexity 3 58 0 3 1075 211 316 108 36 chr11 64235590 64235784 -57608072 + MIRb SINE MIR 37 244 -24 3 1075 301 318 112 74 chr11 64235902 64236187 -57607669 - ORR1E LTR MaLR -59 300 5 3 1075 273 250 140 0 chr11 64236212 64236312 -57607544 + MLT1D LTR MaLR 98 211 -256 3 1075 399 325 108 33 chr11 64236323 64236536 -57607320 + MLT1D LTR MaLR 277 505 0 3 1075 24 0 0 0 chr11 64236640 64236664 -57607192 + AT_rich Low_complexity Low_complexity 1 24 0 3 1075 1219 48 7 0 chr11 64237036 64237182 -57606674 + B1_Mus2 SINE Alu 1 147 0 3 1075 321 158 0 0 chr11 64237185 64237267 -57606589 + A-rich Low_complexity Low_complexity 1 82 0 3 1075 382 288 107 6 chr11 64237410 64237588 -57606268 + L1M4 LINE L1 5193 5388 -758 3 1075 250 337 59 91 chr11 64237788 64237946 -57605910 + MTEa LTR MaLR 20 175 -184 3 1075 567 43 0 0 chr11 64237946 64238016 -57605840 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1075 275 307 35 65 chr11 64238016 64238197 -57605659 + MTEa LTR MaLR 176 365 -14 3 1075 378 0 0 0 chr11 64238533 64238575 -57605281 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1075 300 293 215 15 chr11 64238575 64238710 -57605146 - B3A SINE B2 -36 162 1 3 1075 206 146 24 0 chr11 64238904 64238945 -57604911 + A-rich Low_complexity Low_complexity 2 43 0 3 1075 259 238 27 62 chr11 64239432 64239544 -57604312 - MLT1A0 LTR MaLR -251 114 7 3 1075 43 20 0 0 chr11 64240173 64240223 -57603633 + AT_rich Low_complexity Low_complexity 1 50 0 3 1075 277 306 94 13 chr11 64241169 64241318 -57602538 + MER103 DNA DNA 4 164 -2 3 1075 225 0 0 0 chr11 64242642 64242667 -57601189 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1075 201 125 30 30 chr11 64244286 64244352 -57599504 + A-rich Low_complexity Low_complexity 4 69 0 3 1075 3137 75 2 5 chr11 64244875 64245276 -57598580 - MTB LTR MaLR 0 400 1 3 1075 343 235 67 8 chr11 64246369 64246489 -57597367 + MER33 DNA MER1_type 1 127 -197 3 1075 888 102 20 0 chr11 64246489 64246636 -57597220 + (GA)n Simple_repeat Simple_repeat 2 151 0 3 1075 979 177 54 0 chr11 64247528 64247731 -57596125 + B3 SINE B2 3 216 0 3 1075 23 0 0 0 chr11 64248043 64248066 -57595790 + AT_rich Low_complexity Low_complexity 1 23 0 3 1075 189 175 0 0 chr11 64251780 64251820 -57592036 + A-rich Low_complexity Low_complexity 1 40 0 3 1075 393 22 0 0 chr11 64252352 64252398 -57591458 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1075 296 24 0 24 chr11 64252532 64252574 -57591282 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 1075 968 301 59 3 chr11 64253378 64253698 -57590158 - MER2 DNA MER2_type -7 338 1 3 1075 371 113 0 16 chr11 64254435 64254498 -57589358 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1075 282 114 84 14 chr11 64255960 64256031 -57587825 + GA-rich Low_complexity Low_complexity 4 79 0 3 1075 378 0 0 0 chr11 64256109 64256151 -57587705 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1075 351 321 0 9 chr11 64256999 64257112 -57586744 + MER44C DNA MER2_type 33 144 -589 3 1075 811 312 94 13 chr11 64257151 64257609 -57586247 + MER44C DNA MER2_type 233 727 -6 3 1075 327 223 211 11 chr11 64257636 64257731 -57586125 - PB1D10 SINE Alu -1 116 3 3 1075 21 0 0 0 chr11 64258158 64258179 -57585677 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 736 79 16 0 chr11 64258179 64258305 -57585551 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 3 1075 1042 192 46 5 chr11 64258307 64258501 -57585355 - B3 SINE B2 -10 206 5 3 1075 192 40 0 0 chr11 64260127 64260152 -57583704 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1075 189 107 0 0 chr11 64260622 64260650 -57583206 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1075 206 158 0 26 chr11 64261133 64261172 -57582684 + T-rich Low_complexity Low_complexity 3 40 0 3 1075 354 45 0 0 chr11 64261921 64261965 -57581891 + (TAA)n Simple_repeat Simple_repeat 1 44 0 3 1075 336 294 25 0 chr11 64262856 64262975 -57580881 + L1MA5 LINE L1 6159 6280 -20 3 1075 1021 105 14 0 chr11 64263093 64263236 -57580620 - B1_Mus1 SINE Alu -2 146 2 3 1075 968 202 24 24 chr11 64263831 64264044 -57579812 - URR1A DNA MER1_type -13 213 1 3 1075 218 196 0 0 chr11 64264753 64264799 -57579057 + T-rich Low_complexity Low_complexity 4 49 0 3 1075 564 230 92 14 chr11 64264887 64265028 -57578828 - B3A SINE B2 -35 163 12 3 1075 5416 54 5 3 chr11 64266173 64266837 -57577019 + L1Md_F2 LINE L1 5904 6568 -14 3 1075 425 308 136 42 chr11 64266933 64267197 -57576659 + B4A SINE B4 1 289 -3 3 1075 369 0 0 0 chr11 64267245 64267286 -57576570 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1075 492 295 25 0 chr11 64267974 64268096 -57575760 + RSINE1 SINE B4 26 150 -15 3 1075 531 153 0 0 chr11 64268751 64268849 -57575007 + GA-rich Low_complexity Low_complexity 3 100 0 3 1075 863 207 90 0 chr11 64269232 64269420 -57574436 - B3 SINE B2 -7 209 5 3 1075 243 262 138 0 chr11 64269673 64269753 -57574103 + Tigger9b DNA MER2_type 73 163 -461 3 1075 324 292 0 11 chr11 64269827 64269917 -57573939 + Tigger9b DNA MER2_type 293 381 -243 3 1075 3329 18 39 0 chr11 64270345 64270726 -57573130 - MTA_Mm LTR MaLR 0 396 1 3 1075 9297 33 3 2 chr11 64270728 64271823 -57572033 - MTA_Mm-int LTR MaLR -2 1096 1 3 1075 3329 18 39 0 chr11 64271823 64272204 -57571652 - MTA_Mm LTR MaLR 0 396 1 3 1075 874 222 70 10 chr11 64272510 64272710 -57571146 + B3 SINE B2 5 216 0 3 1075 1253 40 0 0 chr11 64273648 64273796 -57570060 - B1_Mus1 SINE Alu 0 148 1 3 1075 305 345 115 46 chr11 64273800 64274061 -57569795 + MLT1F1 LTR MaLR 26 304 -265 3 1075 213 333 14 98 chr11 64274294 64274437 -57569419 - MER5A DNA MER1_type -41 148 18 4 1075 648 124 0 0 chr11 64275033 64275138 -57568718 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 4 1075 490 341 104 28 chr11 64275760 64276086 -57567770 - MLT1A LTR MaLR -1 373 23 4 1075 891 106 7 13 chr11 64276873 64277026 -57566830 + (GGAGA)n Simple_repeat Simple_repeat 5 156 0 4 1075 512 275 81 25 chr11 64279373 64279571 -57564285 - B3 SINE B2 -7 209 1 4 1075 2798 279 42 9 chr11 64279607 64280509 -57563347 - RCHARR1 DNA MER1_type -39 935 4 4 1075 302 165 13 0 chr11 64280912 64280991 -57562865 + GA-rich Low_complexity Low_complexity 1 80 0 4 1075 256 295 67 15 chr11 64283487 64283621 -57560235 - MER5B DNA MER1_type -16 162 22 4 1075 429 20 0 0 chr11 64283952 64284002 -57559854 + (TTA)n Simple_repeat Simple_repeat 3 52 0 4 1075 1420 169 49 55 chr11 64284024 64284230 -57559626 - ORR1B2 LTR MaLR -4 363 160 4 1075 384 22 0 0 chr11 64284230 64284275 -57559581 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 1075 1420 169 49 55 chr11 64284275 64284394 -57559462 - ORR1B2 LTR MaLR -208 159 40 4 1075 444 156 67 0 chr11 64284395 64284485 -57559371 - ORR1B2 LTR MaLR -271 96 1 4 1075 1023 25 24 30 chr11 64285112 64285280 -57558576 + (TTCTC)n Simple_repeat Simple_repeat 5 171 0 4 1075 180 0 0 0 chr11 64285280 64285299 -57558557 + (TTTC)n Simple_repeat Simple_repeat 3 22 0 4 1075 5485 99 30 117 chr11 64287606 64288228 -57555628 - Lx LINE L1 -10 6644 6009 4 1075 1300 43 9 0 chr11 64288228 64288458 -57555398 + (TTC)n Simple_repeat Simple_repeat 1 232 0 4 1075 5485 99 30 117 chr11 64288458 64288817 -57555039 - Lx LINE L1 -646 6008 5748 4 1075 567 298 95 72 chr11 64288846 64289189 -57554667 + MLT1A LTR MaLR 1 354 -11 4 1075 342 321 66 12 chr11 64289407 64289574 -57554282 - MER21B LTR ERV1 -197 666 491 4 1075 757 370 30 19 chr11 64289598 64289967 -57553889 - MER21B LTR ERV1 -429 434 62 4 1075 1133 70 6 0 chr11 64289971 64290127 -57553729 + (GA)n Simple_repeat Simple_repeat 1 157 0 4 1075 229 321 105 21 chr11 64290337 64290480 -57553376 - MER103 DNA DNA 0 166 12 4 1075 224 125 0 0 chr11 64290512 64290552 -57553304 - L2a LINE L2 -1 3425 3386 4 1075 440 239 21 56 chr11 64292585 64292727 -57551129 - HAL1-2a_MD LINE L1 -544 2480 2344 4 1075 825 237 0 43 chr11 64292728 64292935 -57550921 - B3A SINE B2 0 198 1 4 1075 503 330 75 9 chr11 64293142 64293356 -57550500 - MER21B LTR ERV1 -107 756 529 4 1075 212 179 0 0 chr11 64293806 64293845 -57550011 + (TTA)n Simple_repeat Simple_repeat 3 41 0 4 1075 207 0 0 0 chr11 64293845 64293868 -57549988 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 1075 266 317 46 37 chr11 64293868 64293976 -57549880 - RSINE1 SINE B4 -14 151 43 4 1075 330 337 97 11 chr11 64294049 64294235 -57549621 - MLT1B LTR MaLR -75 315 114 4 1075 247 202 22 0 chr11 64297502 64297591 -57546265 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1075 463 268 0 31 chr11 64297600 64297743 -57546113 - B1F2 SINE Alu -10 139 1 4 1075 230 351 0 0 chr11 64297827 64297901 -57545955 + RSINE1 SINE B4 5 78 -87 4 1075 396 0 0 0 chr11 64297946 64297990 -57545866 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1075 1105 292 3 17 chr11 64299555 64299768 -57544088 + B4 SINE B4 8 220 -72 4 1075 186 43 0 0 chr11 64299768 64299791 -57544065 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1075 1105 292 3 17 chr11 64299791 64299866 -57543990 + B4 SINE B4 221 292 0 4 1075 582 79 0 0 chr11 64300806 64300895 -57542961 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1075 450 263 349 4 chr11 64301193 64301468 -57542388 - MER82 DNA MER2_type -252 401 32 4 1075 242 297 54 0 chr11 64302657 64302731 -57541125 + ID4 SINE ID 3 80 -3 4 1075 234 81 0 0 chr11 64306163 64306200 -57537656 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1075 202 282 0 0 chr11 64310196 64310267 -57533589 + A-rich Low_complexity Low_complexity 1 71 0 4 1075 1104 252 17 24 chr11 64310426 64310715 -57533141 + B4A SINE B4 4 290 -2 4 1075 1016 131 0 20 chr11 64311355 64311503 -57532353 + B1_Mur3 SINE Alu 2 146 -3 4 1075 402 21 0 0 chr11 64311786 64311833 -57532023 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1075 880 267 169 18 chr11 64311860 64312256 -57531600 - L1_Rod LINE L1 0 5847 5392 4 1075 1054 248 130 20 chr11 64312609 64312851 -57531005 - MTD LTR MaLR -14 405 133 4 1075 216 97 0 0 chr11 64312851 64312882 -57530974 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 4 1075 1054 248 130 20 chr11 64312882 64312993 -57530863 - MTD LTR MaLR -287 132 13 4 1075 195 42 0 0 chr11 64313251 64313275 -57530581 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 4 1075 347 188 0 15 chr11 64313593 64313658 -57530198 - PB1D9 SINE Alu -55 65 2 4 1075 280 23 68 0 chr11 64313677 64313721 -57530135 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1075 1148 51 0 0 chr11 64313721 64313858 -57529998 - B1_Mm SINE Alu -9 138 2 4 1075 385 276 38 86 chr11 64313915 64314101 -57529755 + MER20 DNA MER1_type 39 215 -4 4 1075 2275 172 18 55 chr11 64315123 64315560 -57528296 - MTC LTR MaLR 0 421 1 4 1075 725 294 63 23 chr11 64317025 64317390 -57526466 - L1M2 LINE L1 -554 5746 5352 4 1075 1590 284 71 34 chr11 64317436 64317494 -57526362 + L1M2 LINE L1 4556 4604 -1539 4 1075 1325 210 160 14 chr11 64317494 64317856 -57526000 - MTD LTR MaLR 0 419 5 4 1075 1590 284 71 34 chr11 64317856 64318512 -57525344 + L1M2 LINE L1 4605 5297 -846 4 1075 532 179 8 31 chr11 64319199 64319326 -57524530 - L1Md_F3 LINE L1 0 6584 6461 4 1075 358 324 58 47 chr11 64319492 64319683 -57524173 + Tigger5 DNA MER2_type 1 193 -2213 4 1075 436 266 61 127 chr11 64319720 64319901 -57523955 + B3 SINE B2 48 216 0 4 1075 1507 240 23 14 chr11 64320337 64320768 -57523088 - Zaphod DNA Tip100 -2 4029 3595 4 1075 251 294 132 23 chr11 64320776 64320905 -57522951 - MER58B DNA MER1_type 0 341 199 4 1075 290 206 0 0 chr11 64320908 64320971 -57522885 + ID_B1 SINE B4 109 171 -53 4 1075 361 252 29 10 chr11 64321095 64321199 -57522657 - L1MB5 LINE L1 -92 6082 5977 4 1075 414 0 0 0 chr11 64321803 64321849 -57522007 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1075 557 330 30 42 chr11 64321894 64322131 -57521725 - Zaphod DNA Tip100 -3653 378 145 4 1075 219 208 12 61 chr11 64323461 64323543 -57520313 + (TCTG)n Simple_repeat Simple_repeat 4 81 0 4 1075 925 152 135 10 chr11 64324440 64324633 -57519223 - URR1A DNA MER1_type -9 217 1 4 1075 202 275 102 24 chr11 64326030 64326151 -57517705 - MIR SINE MIR -76 192 67 4 1075 207 114 0 0 chr11 64326360 64326395 -57517461 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 4 1075 1162 150 55 27 chr11 64326697 64326916 -57516940 - URR1B DNA MER1_type 0 225 1 4 1075 243 259 12 36 chr11 64327673 64327757 -57516099 - L1ME3A LINE L1 -14 6159 6078 4 1075 887 260 17 42 chr11 64327937 64328178 -57515678 - B4A SINE B4 -56 236 2 4 1075 1377 239 27 40 chr11 64328209 64328580 -57515276 - ORR1D2 LTR MaLR -4 366 1 4 1075 789 273 64 40 chr11 64328801 64329294 -57514562 - L1ME3A LINE L1 -542 5631 5119 4 1075 383 176 24 0 chr11 64329472 64329557 -57514299 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 4 1075 235 255 0 18 chr11 64330829 64330885 -57512971 - L1MB2 LINE L1 -66 6105 6051 4 1075 854 320 21 14 chr11 64332443 64332728 -57511128 - Tigger7 DNA MER2_type -2199 292 6 4 1075 564 308 10 25 chr11 64332754 64332954 -57510902 + B3A SINE B2 1 197 -1 4 1075 35 41 0 0 chr11 64334327 64334376 -57509480 + AT_rich Low_complexity Low_complexity 1 49 0 4 1075 229 226 49 115 chr11 64334745 64334887 -57508969 - MIRb SINE MIR -76 192 51 4 1075 234 277 0 0 chr11 64336631 64336696 -57507160 + G-rich Low_complexity Low_complexity 1 65 0 4 1075 969 25 25 31 chr11 64336936 64337098 -57506758 + (TTCTC)n Simple_repeat Simple_repeat 5 165 0 4 1075 240 35 0 0 chr11 64337098 64337127 -57506729 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1075 608 232 16 0 chr11 64337381 64337506 -57506350 + B3A SINE B2 18 144 -54 4 1075 362 85 17 0 chr11 64337509 64337568 -57506288 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1075 245 51 0 25 chr11 64338573 64338613 -57505243 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 4 1075 1147 69 7 0 chr11 64338618 64338763 -57505093 - B1_Mm SINE Alu -1 146 1 4 1075 1480 271 80 13 chr11 64341043 64341517 -57502339 - RMER20A LTR ERVK 0 516 11 4 1075 393 264 10 4 chr11 64341636 64341738 -57502118 - B1F1 SINE Alu -52 98 1 4 1075 815 269 45 0 chr11 64341979 64342180 -57501676 - B3 SINE B2 -6 210 1 4 1075 338 284 42 10 chr11 64342313 64342409 -57501447 + PB1D10 SINE Alu 17 115 -2 4 1075 1091 124 6 0 chr11 64343176 64343353 -57500503 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 1075 799 313 67 70 chr11 64343365 64343695 -57500161 - L1MB4 LINE L1 -26 6154 5808 4 1075 2529 83 3 3 chr11 64343695 64344022 -57499834 + ORR1A2 LTR MaLR 1 327 0 4 1075 799 313 67 70 chr11 64344022 64344365 -57499491 - L1MB4 LINE L1 -373 5807 5483 4 1075 1999 154 4 93 chr11 64344981 64345226 -57498630 - RMER17C LTR ERVK 0 410 181 4 1075 396 0 0 0 chr11 64345226 64345270 -57498586 + (GAGAA)n Simple_repeat Simple_repeat 5 48 0 4 1075 1999 154 4 93 chr11 64345270 64345474 -57498382 - RMER17C LTR ERVK -230 180 1 4 1075 401 318 97 20 chr11 64345816 64346012 -57497844 - MER44D DNA MER2_type -27 678 469 4 1075 747 323 98 6 chr11 64346069 64346415 -57497441 - Tigger7 DNA MER2_type -2091 400 23 4 1075 737 188 22 0 chr11 64346551 64346689 -57497167 - MTC LTR MaLR -280 141 1 4 1075 271 322 120 16 chr11 64346920 64347103 -57496753 + MIR SINE MIR 12 213 -49 4 1075 528 293 167 40 chr11 64347282 64347606 -57496250 - MLT1A0 LTR MaLR 0 365 1 4 1075 258 276 18 140 chr11 64347977 64348091 -57495765 + B4A SINE B4 3 102 -190 4 1075 228 333 22 112 chr11 64348586 64348900 -57494956 - RLTR12B LTR ERVK 0 528 243 4 1075 402 21 0 0 chr11 64348900 64348947 -57494909 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 4 1075 735 278 4 48 chr11 64348947 64349215 -57494641 - RLTR11B LTR ERVK -196 257 2 5 1075 2153 29 0 11 chr11 64349524 64349805 -57494051 + ORR1A0-int LTR MaLR 1515 1792 0 5 1075 761 64 0 0 chr11 64349805 64349914 -57493942 + ORR1A0 LTR MaLR 1 109 -237 5 1075 5538 8 0 0 chr11 64349914 64350513 -57493343 + MERVL-int LTR ERVL 2384 2982 -2503 5 1075 2635 178 122 10 chr11 64350940 64351455 -57492401 + Lx5 LINE L1 6478 7050 0 5 1075 21 57 0 0 chr11 64351654 64351689 -57492167 + AT_rich Low_complexity Low_complexity 1 35 0 5 1075 21 0 0 0 chr11 64351775 64351796 -57492060 + AT_rich Low_complexity Low_complexity 1 21 0 5 1075 585 0 0 0 chr11 64352160 64352225 -57491631 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1075 656 251 175 0 chr11 64352262 64352473 -57491383 - B4A SINE B4 -43 249 2 5 1075 237 324 57 29 chr11 64352721 64352896 -57490960 - L1MEc LINE L1 -3697 2622 2443 5 1075 317 291 43 31 chr11 64352947 64353110 -57490746 - L1MEc LINE L1 -4050 2350 2186 5 1075 302 308 38 129 chr11 64353374 64353661 -57490195 - MLT1B LTR MaLR -2 388 128 5 1075 1845 202 42 17 chr11 64353689 64354092 -57489764 - MTC LTR MaLR -8 413 1 5 1075 283 301 95 81 chr11 64354306 64354591 -57489265 - MLT1E2 LTR MaLR -59 568 280 5 1076 618 271 37 5 chr11 64358190 64358405 -57485451 - Tigger7 DNA MER2_type -4 2487 2266 5 1076 228 337 28 19 chr11 64358431 64358537 -57485319 - MER44D DNA MER2_type -476 229 123 4 1076 1060 274 78 46 chr11 64361073 64361444 -57482412 + MTD LTR MaLR 35 417 -2 5 1076 432 0 0 0 chr11 64362000 64362048 -57481808 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1076 300 53 0 0 chr11 64362113 64362151 -57481705 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 5 1076 315 0 0 0 chr11 64362152 64362187 -57481669 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1076 992 68 83 0 chr11 64362202 64362335 -57481521 - B1_Mus2 SINE Alu -1 146 3 5 1076 1037 160 51 9 chr11 64362389 64362603 -57481253 - URR1A DNA MER1_type 0 226 4 5 1076 982 160 158 10 chr11 64363898 64364008 -57479848 - URR1A DNA MER1_type -1 225 117 5 1076 360 0 0 0 chr11 64364008 64364048 -57479808 + (CTA)n Simple_repeat Simple_repeat 3 42 0 5 1076 982 160 158 10 chr11 64364048 64364133 -57479723 - URR1A DNA MER1_type -110 116 3 5 1076 351 0 0 0 chr11 64364325 64364364 -57479492 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1076 552 242 8 0 chr11 64365213 64365333 -57478523 + B1F1 SINE Alu 24 144 -5 5 1076 453 219 0 21 chr11 64365359 64365418 -57478438 + polypyrimidine Low_complexity Low_complexity 80 138 0 5 1076 1036 119 0 17 chr11 64365418 64365597 -57478259 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 5 1076 453 219 0 21 chr11 64365597 64365677 -57478179 + polypyrimidine Low_complexity Low_complexity 3 79 0 5 1076 225 0 0 0 chr11 64366688 64366713 -57477143 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1076 180 0 0 0 chr11 64366713 64366732 -57477124 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1076 2676 143 41 45 chr11 64368993 64369548 -57474308 + RLTR40 LTR ERVK 2 554 -263 5 1076 925 74 15 0 chr11 64369550 64369685 -57474171 + (GA)n Simple_repeat Simple_repeat 2 138 0 5 1076 929 322 115 52 chr11 64370346 64371086 -57472770 + L1MB5 LINE L1 3781 4566 -1580 5 1076 5156 34 0 0 chr11 64371086 64371679 -57472177 + L1Md_T LINE L1 5988 6580 -2 5 1076 929 322 115 52 chr11 64371679 64372142 -57471714 + L1MB5 LINE L1 4567 5060 -1086 5 1076 180 0 0 0 chr11 64372148 64372168 -57471688 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 5 1076 740 322 51 75 chr11 64372366 64372970 -57470886 + L1MB5 LINE L1 5294 5883 -291 5 1076 736 190 12 0 chr11 64375895 64376058 -57467798 + (TATATG)n Simple_repeat Simple_repeat 4 168 0 5 1076 244 232 21 28 chr11 64377655 64377797 -57466059 + (TATG)n Simple_repeat Simple_repeat 4 144 0 5 1076 360 237 15 8 chr11 64377838 64377970 -57465886 + (TA)n Simple_repeat Simple_repeat 1 133 0 5 1076 249 267 0 0 chr11 64378371 64378431 -57465425 - MTEa LTR MaLR 0 379 320 5 1076 1259 240 80 3 chr11 64378431 64378745 -57465111 - MTD LTR MaLR 0 419 82 5 1076 437 306 0 0 chr11 64378745 64378869 -57464987 - MTE-int LTR MaLR -1173 407 284 5 1076 320 281 91 127 chr11 64378869 64379122 -57464734 + Lx8 LINE L1 7196 7439 -34 5 1076 931 281 81 34 chr11 64379121 64379566 -57464290 + L1MA6 LINE L1 3120 3641 -3693 5 1076 206 105 0 50 chr11 64379602 64379642 -57464214 + T-rich Low_complexity Low_complexity 4 41 0 5 1076 2224 183 39 2 chr11 64379712 64380118 -57463738 - MTC LTR MaLR 0 421 1 5 1076 444 322 109 22 chr11 64380137 64380448 -57463408 + L1MA6 LINE L1 4837 5174 -1829 5 1076 777 305 56 98 chr11 64380459 64380677 -57463179 + L1MA6 LINE L1 5520 5702 -1301 5 1076 189 74 0 0 chr11 64380677 64380704 -57463152 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1076 241 318 205 0 chr11 64380713 64380864 -57462992 - B3A SINE B2 -16 182 1 5 1076 777 305 56 98 chr11 64380864 64381206 -57462650 + L1MA6 LINE L1 5703 6066 -937 5 1076 627 98 0 0 chr11 64381283 64381375 -57462481 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1076 279 0 0 0 chr11 64381375 64381405 -57462451 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1076 192 40 0 0 chr11 64381441 64381466 -57462390 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 5 1076 41393 14 2 6 chr11 64381521 64387730 -57456126 - L1Md_A LINE L1 -1 6581 405 5 1076 464 305 65 15 chr11 64387733 64387996 -57455860 + L1MA6 LINE L1 6732 7007 -153 5 1076 461 228 99 0 chr11 64388768 64388869 -57454987 + B3 SINE B2 5 115 -101 5 1076 1505 32 5 5 chr11 64388913 64389101 -57454755 - MTA_Mm LTR MaLR 0 396 209 5 1076 2351 161 35 2 chr11 64389129 64389534 -57454322 + MTC LTR MaLR 1 418 -3 5 1076 592 288 61 13 chr11 64389568 64389797 -57454059 - MLT1A0 LTR MaLR 0 365 126 5 1076 249 307 148 0 chr11 64389846 64389947 -57453909 - MTC LTR MaLR -305 116 1 5 1076 23 33 0 0 chr11 64389969 64389999 -57453857 + AT_rich Low_complexity Low_complexity 1 30 0 5 1076 302 94 57 0 chr11 64392759 64392812 -57451044 + CT-rich Low_complexity Low_complexity 6 61 0 5 1076 447 19 0 0 chr11 64392813 64392865 -57450991 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1076 247 264 58 34 chr11 64392909 64393117 -57450739 + RMER17A LTR ERVK 205 417 -334 5 1076 270 0 0 0 chr11 64393119 64393149 -57450707 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1076 540 111 0 0 chr11 64394166 64394247 -57449609 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1076 215 103 26 0 chr11 64394247 64394286 -57449570 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1076 740 294 67 22 chr11 64394408 64394674 -57449182 - Tigger5 DNA MER2_type -8 2398 2127 5 1076 5211 43 2 3 chr11 64394674 64395262 -57448594 - L1Md_F2 LINE L1 0 6582 5996 5 1076 740 294 67 22 chr11 64395262 64395353 -57448503 - Tigger5 DNA MER2_type -280 2126 2025 5 1076 230 278 111 0 chr11 64395426 64395498 -57448358 - Tigger5 DNA MER2_type -2283 123 44 5 1076 339 65 0 0 chr11 64395911 64395957 -57447899 + (ATTG)n Simple_repeat Simple_repeat 3 48 0 5 1076 242 73 24 0 chr11 64395957 64395998 -57447858 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 5 1076 567 233 165 33 chr11 64396142 64396324 -57447532 - B4 SINE B4 0 292 87 5 1076 537 318 112 13 chr11 64396808 64397198 -57446658 + L1M4 LINE L1 3700 4125 -2021 5 1076 342 341 105 42 chr11 64397390 64398234 -57445622 + L1M4 LINE L1 4431 5328 -818 5 1076 1211 266 93 17 chr11 64399624 64399968 -57443888 - MTE2b LTR MaLR -9 370 1 5 1076 294 0 65 0 chr11 64403130 64403176 -57440680 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1076 1050 126 0 0 chr11 64403421 64403588 -57440268 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 1076 623 246 6 12 chr11 64403981 64404150 -57439706 + MER53 DNA hAT 14 181 -12 5 1076 308 24 24 0 chr11 64405029 64405070 -57438786 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 5 1076 183 100 0 0 chr11 64405743 64405773 -57438083 + (ATG)n Simple_repeat Simple_repeat 2 31 0 5 1076 222 206 0 0 chr11 64406235 64406308 -57437548 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1076 477 219 0 0 chr11 64406389 64406549 -57437307 + (CA)n Simple_repeat Simple_repeat 1 160 0 5 1076 409 313 103 118 chr11 64407271 64407619 -57436237 - MER2 DNA MER2_type -1 344 2 5 1076 193 57 0 54 chr11 64407732 64407769 -57436087 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 5 1076 6107 187 36 21 chr11 64408038 64409885 -57433971 + Lx5 LINE L1 5113 6976 0 5 1076 316 280 74 9 chr11 64410429 64410537 -57433319 + MIRc SINE MIR 37 151 -117 5 1076 775 257 118 70 chr11 64410705 64411136 -57432720 - CR1_Mam LINE CR1 -1542 662 211 5 1076 1681 180 87 19 chr11 64413014 64413325 -57430531 + MTC LTR MaLR 90 421 0 5 1076 212 212 59 29 chr11 64413738 64413806 -57430050 - MIR SINE MIR -87 175 106 5 1076 185 302 62 16 chr11 64413873 64413937 -57429919 - MIRm SINE MIR -15 261 195 5 1076 2444 163 12 0 chr11 64415116 64415522 -57428334 + MTC LTR MaLR 1 411 -10 5 1076 468 303 45 61 chr11 64415806 64416052 -57427804 + L1MA5 LINE L1 6053 6294 -9 5 1076 356 321 51 7 chr11 64416397 64416535 -57427321 - MER2 DNA MER2_type 0 345 202 5 1076 22080 71 1 0 chr11 64416555 64419406 -57424450 + L1Md_F2 LINE L1 2732 5586 -297 5 1076 8774 40 4 1 chr11 64419406 64420399 -57423457 + L1Md_F2 LINE L1 5587 6582 0 5 1076 27 29 0 0 chr11 64420465 64420499 -57423357 + AT_rich Low_complexity Low_complexity 1 34 0 5 1076 25 51 0 0 chr11 64420555 64420594 -57423262 + AT_rich Low_complexity Low_complexity 1 39 0 5 1076 336 83 0 0 chr11 64421243 64421291 -57422565 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1076 288 77 0 0 chr11 64421429 64421468 -57422388 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1076 328 282 40 72 chr11 64423021 64423158 -57420698 - MLT1A0 LTR MaLR -17 373 257 5 1076 258 219 0 0 chr11 64423952 64424016 -57419840 + GA-rich Low_complexity Low_complexity 2 65 0 5 1076 3238 145 36 25 chr11 64424544 64425095 -57418761 + RLTR31B_Mm LTR ERVK 1 557 0 5 1076 354 296 135 66 chr11 64425095 64425384 -57418472 + RMER3D-int LTR ERVK 1 309 -2533 5 1076 422 200 37 44 chr11 64425370 64425506 -57418350 + RMER3D-int LTR ERVK 1015 1149 -1693 5 1076 384 138 0 87 chr11 64425515 64425618 -57418238 + RMER3D-int LTR ERVK 680 773 -2069 5 1076 1573 163 22 25 chr11 64425703 64426018 -57417838 - RMER3D-int LTR ERVK -1222 1620 1307 5 1076 410 103 0 0 chr11 64426018 64426076 -57417780 - RLTR31B_Mm LTR ERVK -499 58 1 5 1076 4187 199 71 44 chr11 64426077 64427255 -57416601 - RMER3D-int LTR ERVK -1 2841 1632 5 1076 1905 169 6 6 chr11 64427242 64427582 -57416274 - RMER3D-int LTR ERVK -1338 1504 1165 5 1076 340 195 0 65 chr11 64427755 64427848 -57416008 + RMER3D-int LTR ERVK 2121 2207 -635 5 1076 1616 319 68 23 chr11 64428521 64429256 -57414600 + Lx8 LINE L1 6678 7445 -28 5 1076 202 54 79 26 chr11 64429265 64429303 -57414553 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 5 1076 799 156 6 22 chr11 64429305 64429488 -57414368 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1076 196 53 0 50 chr11 64431166 64431206 -57412650 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1076 387 0 0 0 chr11 64431714 64431757 -57412099 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1076 310 320 0 0 chr11 64432327 64432405 -57411451 - Cheshire DNA MER1_type 0 2420 2343 6 1076 241 312 51 13 chr11 64432620 64432698 -57411158 + ID4_ SINE ID 2 82 -1 6 1076 195 42 0 0 chr11 64433043 64433067 -57410789 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 6 1076 398 20 20 0 chr11 64433266 64433317 -57410539 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1076 219 231 0 98 chr11 64433476 64433537 -57410319 + B1_Mus1 SINE Alu 5 58 -91 6 1076 582 0 132 0 chr11 64433541 64433790 -57410066 + (CAGG)n Simple_repeat Simple_repeat 1 281 0 6 1076 350 184 63 48 chr11 64433793 64433899 -57409957 + PB1D9 SINE Alu 39 146 -3 6 1076 460 192 0 13 chr11 64434935 64435014 -57408842 + ID4 SINE ID 3 80 -3 6 1076 987 239 149 43 chr11 64435328 64435484 -57408372 - ORR1E LTR MaLR -2 357 187 6 1076 501 32 0 0 chr11 64435484 64435547 -57408309 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1076 405 0 0 0 chr11 64435547 64435591 -57408265 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1076 987 239 149 43 chr11 64435591 64435756 -57408100 - ORR1E LTR MaLR -173 186 2 6 1076 1039 215 223 15 chr11 64436387 64436656 -57407200 - MTD LTR MaLR 0 419 95 6 1076 216 130 0 0 chr11 64436687 64436733 -57407123 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 6 1076 1098 66 66 0 chr11 64436735 64436872 -57406984 - B1_Mus1 SINE Alu -1 147 2 6 1076 22 0 0 0 chr11 64436873 64436895 -57406961 + AT_rich Low_complexity Low_complexity 1 22 0 6 1076 3982 49 31 23 chr11 64436905 64437388 -57406468 + L1_Mus1 LINE L1 6078 6564 -3 6 1076 298 191 56 42 chr11 64437413 64437484 -57406372 - MTD LTR MaLR -335 86 15 6 1076 207 0 0 0 chr11 64437484 64437507 -57406349 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1076 325 377 150 4 chr11 64437682 64437956 -57405900 + MLT1L LTR MaLR 128 441 -169 6 1076 297 188 71 35 chr11 64438118 64438219 -57405637 - ORR1A4 LTR MaLR -255 112 1 6 1076 1053 116 13 20 chr11 64439307 64439456 -57404400 + B1_Mus1 SINE Alu 1 148 0 6 1076 397 172 0 33 chr11 64440318 64440408 -57403448 - MLT1A1 LTR MaLR -9 399 313 6 1076 307 210 74 153 chr11 64441704 64441867 -57401989 + L1MC4a LINE L1 7510 7659 -223 6 1076 258 286 15 31 chr11 64442084 64442214 -57401642 + (TA)n Simple_repeat Simple_repeat 2 129 0 6 1076 263 28 0 27 chr11 64443094 64443131 -57400725 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 6 1076 312 91 0 0 chr11 64443147 64443191 -57400665 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 6 1076 1368 239 30 10 chr11 64443544 64443840 -57400016 - MTD LTR MaLR -117 302 1 6 1076 299 220 34 0 chr11 64443926 64443985 -57399871 + ID4 SINE ID 14 74 -9 6 1076 396 40 0 0 chr11 64443994 64444044 -57399812 + (TGG)n Simple_repeat Simple_repeat 1 50 0 6 1076 1704 47 5 0 chr11 64445226 64445418 -57398438 + B2_Mm1t SINE B2 1 193 0 6 1076 1394 167 9 0 chr11 64445751 64445972 -57397884 - URR1B DNA MER1_type 0 225 3 6 1076 242 299 0 33 chr11 64446063 64446153 -57397703 - RMER1C Other Other -10 1332 1246 6 1076 1533 302 84 38 chr11 64446221 64446912 -57396944 - Lx8 LINE L1 -198 7275 6553 6 1076 448 354 141 48 chr11 64446925 64447569 -57396287 + MER21B LTR ERV1 133 836 -27 6 1076 183 50 0 91 chr11 64449384 64449428 -57394428 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 6 1076 3494 248 39 42 chr11 64449432 64450372 -57393484 - Lx7 LINE L1 -272 7424 6487 6 1076 2177 102 130 25 chr11 64450372 64450713 -57393143 + MTB_Mm LTR MaLR 1 376 -31 6 1076 279 0 0 0 chr11 64450713 64450744 -57393112 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1076 2177 102 130 25 chr11 64450744 64450763 -57393093 + MTB_Mm LTR MaLR 377 399 -8 6 1076 4183 227 36 30 chr11 64450770 64451719 -57392137 - Lx7 LINE L1 -1208 6488 5530 6 1076 1712 164 189 0 chr11 64451719 64452042 -57391814 + ORR1C2 LTR MaLR 1 384 0 6 1076 4183 194 30 32 chr11 64452042 64452585 -57391271 - Lx7 LINE L1 -351 5529 4973 6 1076 23 54 0 0 chr11 64454286 64454323 -57389533 + AT_rich Low_complexity Low_complexity 1 37 0 6 1076 372 290 121 34 chr11 64454997 64455204 -57388652 + MLT1A1 LTR MaLR 39 263 -145 6 1076 296 125 36 36 chr11 64455480 64455563 -57388293 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 6 1076 432 0 0 0 chr11 64455566 64455614 -57388242 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1076 417 275 29 0 chr11 64455620 64455735 -57388121 - B1F1 SINE Alu -21 128 1 6 1076 271 263 96 22 chr11 64457057 64457193 -57386663 + L1M5 LINE L1 4608 4753 -1393 6 1076 292 333 71 29 chr11 64457390 64457560 -57386296 - Tigger5 DNA MER2_type -2164 242 66 6 1076 2317 169 35 23 chr11 64458853 64459284 -57384572 + RMER5 LTR ERV1 13 448 -86 6 1076 795 349 103 31 chr11 64460876 64461431 -57382425 - MER44C DNA MER2_type 0 733 139 6 1076 327 265 21 106 chr11 64462753 64462989 -57380867 + L1MB8 LINE L1 5862 6077 -101 6 1076 2455 100 6 0 chr11 64463588 64463909 -57379947 + ORR1A2 LTR MaLR 5 327 0 6 1076 276 77 0 0 chr11 64464982 64465021 -57378835 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 6 1076 207 0 0 0 chr11 64466795 64466818 -57377038 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1076 398 281 8 32 chr11 64467098 64467223 -57376633 + MTEb LTR MaLR 258 379 0 6 1076 414 0 0 0 chr11 64467236 64467282 -57376574 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1076 29 60 0 0 chr11 64467313 64467363 -57376493 + AT_rich Low_complexity Low_complexity 1 50 0 6 1076 312 163 0 0 chr11 64467404 64467458 -57376398 + B2_Mm2 SINE B2 1 54 -162 6 1076 283 246 125 49 chr11 64468314 64468498 -57375358 + L1MCa LINE L1 1 198 -5847 6 1076 339 307 16 17 chr11 64469043 64469219 -57374637 + L1MCa LINE L1 1004 1210 -5541 6 1076 454 273 205 23 chr11 64469311 64469698 -57374158 + L1MCa LINE L1 2178 2608 -4037 6 1076 27 62 0 0 chr11 64469735 64469783 -57374073 + AT_rich Low_complexity Low_complexity 1 48 0 6 1076 523 291 89 18 chr11 64469797 64470102 -57373754 - MT2C_Mm LTR ERVL -164 311 1 6 1076 782 290 101 19 chr11 64470287 64470715 -57373141 + L1MCa LINE L1 2731 3193 -3371 6 1076 243 61 0 0 chr11 64471575 64471608 -57372248 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 1076 1206 68 0 0 chr11 64471609 64471755 -57372101 - B1_Mus1 SINE Alu 0 148 3 6 1076 216 135 0 0 chr11 64472354 64472391 -57371465 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1076 243 0 0 0 chr11 64473197 64473224 -57370632 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1076 291 352 162 27 chr11 64473361 64473583 -57370273 - MER102b DNA MER1_type -89 252 1 6 1076 1124 222 91 59 chr11 64475006 64475293 -57368563 - MTD LTR MaLR -117 302 7 6 1076 931 222 75 15 chr11 64475809 64476010 -57367846 - B3 SINE B2 0 216 4 6 1076 235 171 0 0 chr11 64478416 64478457 -57365399 - MER57C2 LTR ERV1 -261 173 133 6 1076 25 31 0 0 chr11 64479089 64479121 -57364735 + AT_rich Low_complexity Low_complexity 1 32 0 6 1076 228 275 60 36 chr11 64479422 64479505 -57364351 + L1MC1 LINE L1 6202 6286 -47 6 1076 611 280 70 46 chr11 64479539 64479823 -57364033 + B4A SINE B4 2 292 0 6 1076 413 223 18 6 chr11 64480126 64480293 -57363563 + (TG)n Simple_repeat Simple_repeat 1 169 0 6 1076 285 264 22 11 chr11 64480325 64480417 -57363439 + (TG)n Simple_repeat Simple_repeat 1 93 0 6 1076 568 281 193 42 chr11 64480439 64480677 -57363179 - B4 SINE B4 -14 278 5 6 1076 256 333 45 18 chr11 64481153 64481263 -57362593 + MER94 DNA AcHobo 2 114 -20 6 1076 210 316 26 13 chr11 64481274 64481351 -57362505 - MIR SINE MIR -151 111 34 6 1076 4559 88 9 5 chr11 64481787 64482369 -57361487 - L1Md_F2 LINE L1 -14 6568 5985 6 1076 9182 53 0 6 chr11 64482369 64483631 -57360225 + L1Md_F2 LINE L1 4752 6006 -576 6 1076 7742 38 1 0 chr11 64483919 64484787 -57359069 + L1Md_F2 LINE L1 5714 6582 0 6 1076 266 143 0 41 chr11 64485048 64485121 -57358735 + A-rich Low_complexity Low_complexity 1 70 0 6 1076 205 341 0 12 chr11 64486055 64486138 -57357718 - L2c LINE L2 -260 3127 3046 6 1077 4748 160 80 65 chr11 64487930 64488819 -57355037 + RMER19B LTR ERVK 1 902 0 6 1077 302 351 48 18 chr11 64489899 64490155 -57353701 + L1MB7 LINE L1 5911 6173 -1 6 1077 1079 183 55 27 chr11 64491906 64492125 -57351731 + URR1B DNA MER1_type 1 225 0 6 1077 434 183 0 9 chr11 64492878 64492994 -57350862 + (CA)n Simple_repeat Simple_repeat 2 116 0 6 1077 344 357 53 32 chr11 64494178 64494424 -57349432 + RLTR12B LTR ERVK 8 258 -270 6 1077 389 317 105 76 chr11 64495635 64495836 -57348020 + MLT1A LTR MaLR 23 228 -137 6 1077 579 51 0 0 chr11 64495836 64495915 -57347941 + (TC)n Simple_repeat Simple_repeat 1 79 0 6 1077 297 0 0 0 chr11 64495915 64495947 -57347909 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1077 345 317 105 76 chr11 64495947 64496048 -57347808 + MLT1A LTR MaLR 229 334 -31 6 1077 656 68 0 10 chr11 64496048 64496152 -57347704 + (CCCTAA)n Simple_repeat Simple_repeat 4 106 0 6 1077 2688 152 29 2 chr11 64497375 64497783 -57346073 - MTC LTR MaLR 0 421 3 6 1077 234 275 87 0 chr11 64498476 64498545 -57345311 + MLT2D LTR ERVL 15 89 -375 6 1077 314 45 0 22 chr11 64498601 64498646 -57345210 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 6 1077 637 300 19 0 chr11 64498781 64498941 -57344915 + B3A SINE B2 6 168 -30 6 1077 426 20 0 0 chr11 64498955 64499006 -57344850 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1077 238 294 96 42 chr11 64499039 64499206 -57344650 + MLT2D LTR ERVL 219 394 -20 6 1077 688 303 229 26 chr11 64499276 64499578 -57344278 - MLT1A0 LTR MaLR 0 365 3 6 1077 201 204 20 0 chr11 64499583 64499632 -57344224 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6 1077 507 308 15 0 chr11 64499648 64499778 -57344078 - ID_B1 SINE B4 0 224 93 6 1077 363 44 0 0 chr11 64500629 64500674 -57343182 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1077 8038 77 3 5 chr11 64500872 64501973 -57341883 - L1_Mus3 LINE L1 0 6638 5540 2 1077 427 336 14 14 chr11 64501973 64502115 -57341741 + RSINE1 SINE B4 24 165 0 3 1077 3114 34 39 8 chr11 64502425 64502809 -57341047 + MTA_Mm LTR MaLR 1 396 0 4 1077 246 194 32 16 chr11 64503951 64504014 -57339842 + GA-rich Low_complexity Low_complexity 2 65 0 5 1077 660 279 6 6 chr11 64504650 64504812 -57339044 + RSINE1 SINE B4 4 165 0 6 1077 235 317 98 58 chr11 64504659 64504833 -57339023 + B3A SINE B2 12 192 -6 7 1077 736 284 108 29 chr11 64504923 64505366 -57338490 - RMER5 LTR ERV1 -10 524 47 8 1077 270 0 0 0 chr11 64505403 64505433 -57338423 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1077 239 204 0 36 chr11 64505537 64505593 -57338263 + GA-rich Low_complexity Low_complexity 2 55 0 1 1077 827 285 113 34 chr11 64505707 64506095 -57337761 - MTD LTR MaLR 0 419 1 1 1077 261 0 0 0 chr11 64506454 64506483 -57337373 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1077 252 310 34 17 chr11 64507715 64507833 -57336023 - LTR81C LTR ERV1? -3 1150 1031 1 1077 273 242 23 0 chr11 64507867 64507995 -57335861 + (ATG)n Simple_repeat Simple_repeat 1 131 0 1 1077 336 359 0 0 chr11 64507995 64508126 -57335730 + (ATGGTG)n Simple_repeat Simple_repeat 5 135 0 1 1077 2633 319 61 67 chr11 64508127 64508277 -57335579 + L1M2 LINE L1 2137 2285 -3861 1 1077 1800 151 51 13 chr11 64508277 64508592 -57335264 - ORR1A4 LTR MaLR -2 327 1 1 1077 2633 307 78 93 chr11 64508592 64508924 -57334932 + L1M2 LINE L1 2281 2648 -3495 1 1077 435 38 0 0 chr11 64508924 64508977 -57334879 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 1 1077 2633 307 78 93 chr11 64508977 64509091 -57334765 + L1M2 LINE L1 2649 2770 -3373 1 1077 441 0 0 0 chr11 64509091 64509140 -57334716 + (GGAGA)n Simple_repeat Simple_repeat 3 51 0 1 1077 2633 307 78 93 chr11 64509140 64509332 -57334524 + L1M2 LINE L1 2771 2959 -3184 1 1077 248 62 0 0 chr11 64509332 64509364 -57334492 - tRNA-Met_ tRNA tRNA -38 38 7 2 1077 2633 307 78 93 chr11 64509364 64510103 -57333753 + L1M2 LINE L1 2960 3691 -2452 1 1077 432 0 0 0 chr11 64510103 64510151 -57333705 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 2 1077 2633 307 78 93 chr11 64510151 64511313 -57332543 + L1M2 LINE L1 3692 4820 -1323 1 1077 541 319 45 14 chr11 64511365 64511675 -57332181 + L1M2 LINE L1 5411 5784 -507 1 1077 2038 145 52 35 chr11 64511685 64512085 -57331771 - MTC LTR MaLR -9 412 6 2 1077 183 156 0 0 chr11 64512258 64512290 -57331566 + (TATG)n Simple_repeat Simple_repeat 1 32 0 2 1077 25 65 0 0 chr11 64512566 64512612 -57331244 + AT_rich Low_complexity Low_complexity 1 46 0 2 1077 501 298 6 24 chr11 64513480 64513645 -57330211 + RSINE1 SINE B4 4 165 0 2 1077 1652 192 146 14 chr11 64515686 64516104 -57327752 + RMER5 LTR ERV1 1 473 -61 2 1077 1122 286 128 64 chr11 64517347 64518287 -57325569 + L1M4 LINE L1 18 1017 -5525 2 1077 513 0 0 0 chr11 64518585 64518642 -57325214 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1077 871 266 67 56 chr11 64518742 64519101 -57324755 - RMER5 LTR ERV1 0 534 172 2 1077 311 291 164 77 chr11 64519161 64519381 -57324475 - B4 SINE B4 -18 274 36 3 1077 297 308 114 15 chr11 64519465 64519597 -57324259 - MLT2B4 LTR ERVL -54 502 358 3 1077 2054 58 25 7 chr11 64519722 64520002 -57323854 + L1_Mus3 LINE L1 6352 6636 -2 3 1077 1215 74 0 0 chr11 64520011 64520174 -57323682 + (GA)n Simple_repeat Simple_repeat 1 163 0 3 1077 1344 151 81 8 chr11 64520472 64520706 -57323150 + Lx4A LINE L1 6808 7058 0 3 1077 378 129 0 0 chr11 64520799 64520861 -57322995 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1077 320 325 77 30 chr11 64520861 64521096 -57322760 + L1M4 LINE L1 4853 5098 -1546 2 1077 248 285 45 23 chr11 64521272 64521405 -57322451 - L1MEc LINE L1 -6202 198 63 3 1077 327 253 22 0 chr11 64522496 64522587 -57321269 + PB1 SINE Alu 28 120 -7 3 1077 974 250 128 59 chr11 64523715 64524106 -57319750 + MTD LTR MaLR 1 418 -1 3 1077 1026 134 0 0 chr11 64524558 64524715 -57319141 + L1_Mur2 LINE L1 4028 4184 -1693 3 1077 27 0 0 0 chr11 64526926 64526953 -57316903 + AT_rich Low_complexity Low_complexity 1 27 0 4 1077 1163 61 0 32 chr11 64526956 64527068 -57316788 + (GAA)n Simple_repeat Simple_repeat 1 108 0 4 1077 1362 50 0 0 chr11 64527068 64527247 -57316609 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1077 1163 61 0 32 chr11 64527247 64527320 -57316536 + (GAA)n Simple_repeat Simple_repeat 1 72 0 4 1077 264 299 27 34 chr11 64527407 64527556 -57316300 + HAL1 LINE L1 2270 2417 -90 4 1077 21 0 0 0 chr11 64527888 64527909 -57315947 + AT_rich Low_complexity Low_complexity 1 21 0 4 1077 909 113 277 0 chr11 64528416 64528593 -57315263 + URR1A DNA MER1_type 1 226 0 4 1077 236 167 56 0 chr11 64529041 64529095 -57314761 + CT-rich Low_complexity Low_complexity 4 60 0 4 1077 386 290 10 0 chr11 64529100 64529200 -57314656 - PB1 SINE Alu -19 108 8 4 1077 771 215 14 76 chr11 64530911 64531122 -57312734 - B3A SINE B2 0 198 1 4 1077 654 13 0 0 chr11 64531578 64531653 -57312203 + (TTCCC)n Simple_repeat Simple_repeat 5 79 0 5 1077 511 273 7 36 chr11 64532985 64533122 -57310734 + RSINE1 SINE B4 4 136 -29 5 1077 229 279 73 37 chr11 64533913 64533995 -57309861 + PB1D10 SINE Alu 3 87 -30 5 1077 662 311 0 5 chr11 64534369 64534563 -57309293 - L1M3 LINE L1 -2246 3894 3702 5 1077 298 115 33 0 chr11 64534610 64534671 -57309185 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1077 1866 292 45 58 chr11 64537836 64538084 -57305772 + Lx8 LINE L1 6369 6604 -869 5 1077 742 249 17 111 chr11 64538084 64538319 -57305537 + B3 SINE B2 3 215 -1 5 1077 1866 291 62 58 chr11 64538319 64538878 -57304978 + Lx8 LINE L1 6595 7221 -252 5 1077 654 141 0 0 chr11 64539246 64539263 -57304593 + (TC)n Simple_repeat Simple_repeat 1 17 0 5 1077 491 66 13 0 chr11 64539263 64539339 -57304517 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1077 654 141 0 0 chr11 64539339 64539456 -57304400 + (TC)n Simple_repeat Simple_repeat 2 118 0 5 1077 297 0 0 0 chr11 64539456 64539489 -57304367 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1077 312 259 172 0 chr11 64539491 64539607 -57304249 - B3A SINE B2 -60 138 3 6 1077 1215 240 54 28 chr11 64539763 64540080 -57303776 + MTD LTR MaLR 18 342 -77 6 1077 23 0 0 0 chr11 64541025 64541048 -57302808 + AT_rich Low_complexity Low_complexity 1 23 0 6 1077 203 324 0 0 chr11 64541911 64541985 -57301871 + A-rich Low_complexity Low_complexity 2 75 0 6 1077 315 0 0 0 chr11 64542397 64542432 -57301424 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1077 3513 118 14 27 chr11 64542432 64542973 -57300883 - Lx4A LINE L1 -13 7045 6514 6 1077 202 298 5 55 chr11 64543797 64543919 -57299937 + GA-rich Low_complexity Low_complexity 1 115 0 6 1077 478 248 83 0 chr11 64544890 64545011 -57298845 - B1_Mur1 SINE Alu -6 143 13 6 1077 460 262 152 109 chr11 64545065 64545395 -57298461 + MTEb LTR MaLR 13 356 -23 6 1077 324 251 29 7 chr11 64545583 64545687 -57298169 - BC1_Mm scRNA scRNA -48 104 2 7 1077 330 252 0 75 chr11 64545762 64545869 -57297987 + MT2B LTR ERVL 159 257 -344 7 1077 863 50 0 25 chr11 64545792 64545914 -57297942 + B1_Mus1 SINE Alu 30 148 0 7 1077 472 273 89 20 chr11 64546086 64546288 -57297568 + B3 SINE B2 1 216 0 7 1077 336 354 50 62 chr11 64547038 64547297 -57296559 + L1M4b LINE L1 977 1232 -6102 7 1077 614 295 72 75 chr11 64547423 64547702 -57296154 - MLT1A LTR MaLR -16 358 81 7 1077 809 260 70 44 chr11 64547889 64548187 -57295669 + L1MB7 LINE L1 5615 5920 -264 7 1077 527 327 67 8 chr11 64548188 64548441 -57295415 - MER74A LTR ERVL -17 541 274 7 1077 1263 160 0 14 chr11 64548445 64548667 -57295189 - URR1B DNA MER1_type -2 223 5 7 1077 297 242 162 24 chr11 64549192 64549422 -57294434 + L1MA5 LINE L1 5727 6003 -297 7 1077 315 0 0 0 chr11 64549496 64549531 -57294325 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1077 518 302 81 85 chr11 64549764 64550035 -57293821 + B4 SINE B4 13 282 -10 8 1077 186 246 0 0 chr11 64550762 64550823 -57293033 + A-rich Low_complexity Low_complexity 1 61 0 8 1077 387 0 0 0 chr11 64552190 64552233 -57291623 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1077 496 277 58 7 chr11 64553652 64553790 -57290066 + ID_B1 SINE B4 80 224 0 8 1077 314 294 57 29 chr11 64553940 64554080 -57289776 - Lx8 LINE L1 -692 6781 6638 8 1077 1445 239 22 30 chr11 64554107 64554477 -57289379 + ORR1D2 LTR MaLR 1 367 -3 8 1077 645 272 134 19 chr11 64554603 64554910 -57288946 - Lx8 LINE L1 -1003 6470 6129 8 1077 228 232 0 0 chr11 64554913 64554969 -57288887 - MLT1A0 LTR MaLR -40 465 410 8 1077 262 351 72 7 chr11 64554977 64555129 -57288727 - MT2A LTR ERVL -21 512 351 8 1077 238 355 98 45 chr11 64555346 64555570 -57288286 + MamGypLTR2 LTR Gypsy 32 267 -922 8 1077 605 312 41 36 chr11 64556123 64556319 -57287537 + B3A SINE B2 1 197 -1 9 1077 249 33 0 0 chr11 64556326 64556356 -57287500 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 9 1077 1666 179 62 3 chr11 64556373 64556501 -57287355 - ORR1C2 LTR MaLR -58 326 191 9 1077 597 28 0 0 chr11 64556501 64556572 -57287284 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 1077 1666 179 62 3 chr11 64556572 64556751 -57287105 - ORR1C2 LTR MaLR -194 190 2 9 1077 312 287 22 22 chr11 64556755 64556844 -57287012 - Lx8 LINE L1 -866 6607 6519 9 1077 236 227 118 13 chr11 64556969 64557045 -57286811 - MLT1A0 LTR MaLR -44 423 340 8 1077 576 337 20 5 chr11 64557028 64557228 -57286628 - MLT1A0 LTR MaLR -149 216 14 8 1077 279 0 0 0 chr11 64557569 64557600 -57286256 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1077 379 264 16 12 chr11 64558497 64558750 -57285106 + CT-rich Low_complexity Low_complexity 1 253 0 9 1077 246 62 0 0 chr11 64559342 64559374 -57284482 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 9 1077 621 202 0 0 chr11 64559504 64559613 -57284243 - B1_Mur1 SINE Alu -20 129 21 9 1077 407 267 90 32 chr11 64560233 64560388 -57283468 + LTR85b LTR Gypsy? 8 171 -613 9 1077 225 0 0 0 chr11 64560883 64560908 -57282948 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1077 1913 129 94 21 chr11 64561042 64561382 -57282474 + ORR1B2 LTR MaLR 1 365 -2 1 1077 242 103 0 25 chr11 64561382 64561421 -57282435 - ID4 SINE ID -41 42 5 1 1077 343 265 8 66 chr11 64563286 64563407 -57280449 - PB1D10 SINE Alu -2 115 2 1 1077 498 250 47 24 chr11 64564165 64564292 -57279564 - RSINE1 SINE B4 -24 141 12 1 1077 2030 222 40 7 chr11 64564951 64565355 -57278501 - MTD LTR MaLR 0 419 3 1 1077 351 0 0 0 chr11 64565368 64565407 -57278449 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1077 400 244 43 22 chr11 64565408 64565500 -57278356 + PB1D10 SINE Alu 24 117 0 1 1077 797 322 26 11 chr11 64565552 64565816 -57278040 + B4A SINE B4 7 274 -18 1 1077 1500 235 52 41 chr11 64565900 64566264 -57277592 + ORR1D2 LTR MaLR 3 370 0 1 1077 25 31 0 0 chr11 64567426 64567458 -57276398 + AT_rich Low_complexity Low_complexity 1 32 0 1 1077 568 342 19 0 chr11 64568010 64568171 -57275685 + B3A SINE B2 1 164 -34 1 1077 507 17 0 0 chr11 64568176 64568236 -57275620 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1077 334 352 71 52 chr11 64568305 64568515 -57275341 + MER45C DNA Tip100 87 300 -653 1 1077 464 258 22 95 chr11 64569331 64569562 -57274294 + L1MA8 LINE L1 6077 6290 -1 1 1077 297 180 119 10 chr11 64569687 64569788 -57274068 - MER33 DNA MER1_type -86 238 127 1 1077 1573 264 92 76 chr11 64570209 64570548 -57273308 + RCHARR1 DNA MER1_type 3 349 -625 1 1077 541 245 41 94 chr11 64570548 64570719 -57273137 - RSINE1 SINE B4 0 165 4 1 1077 1573 264 92 76 chr11 64570719 64571040 -57272816 + RCHARR1 DNA MER1_type 350 674 -300 1 1077 461 262 18 27 chr11 64571044 64571154 -57272702 + B3A SINE B2 4 112 -86 1 1077 8636 42 2 1 chr11 64571155 64572876 -57270980 - L1Md_F2 LINE L1 0 6582 4862 1 1077 304 264 0 0 chr11 64573526 64573598 -57270258 - MTD LTR MaLR -329 90 19 1 1077 1141 190 50 10 chr11 64573780 64573982 -57269874 + B3 SINE B2 2 211 -5 1 1077 307 233 21 53 chr11 64574114 64574209 -57269647 + MLT1A1 LTR MaLR 314 405 -3 1 1077 823 283 101 37 chr11 64574757 64575025 -57268831 - B4 SINE B4 0 292 8 1 1077 24 0 0 0 chr11 64575326 64575350 -57268506 + AT_rich Low_complexity Low_complexity 1 24 0 1 1077 1145 74 0 0 chr11 64575355 64575490 -57268366 + B1_Mm SINE Alu 1 135 -12 1 1077 621 0 0 0 chr11 64575491 64575560 -57268296 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 1 1077 416 271 8 17 chr11 64575778 64575898 -57267958 - RMER15 LTR ERVL -158 417 299 1 1077 393 22 0 0 chr11 64576096 64576142 -57267714 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1077 198 0 0 0 chr11 64576143 64576165 -57267691 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1077 441 0 0 0 chr11 64576166 64576215 -57267641 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1077 611 280 39 22 chr11 64578243 64578422 -57265434 - B3A SINE B2 -15 183 2 1 1077 2386 170 129 57 chr11 64579385 64579929 -57263927 - RLTR31A_Mm LTR ERVK -1 583 1 1 1077 187 132 158 0 chr11 64580006 64580044 -57263812 - MIRm SINE MIR -108 168 125 1 1077 483 234 0 18 chr11 64580249 64580362 -57263494 - L1M1 LINE L1 -828 5472 5362 1 1077 595 251 207 58 chr11 64580436 64580779 -57263077 - L1MB8 LINE L1 -185 5993 5600 1 1077 393 219 29 6 chr11 64580843 64580942 -57262914 - PB1D10 SINE Alu -1 119 19 1 1077 338 339 95 44 chr11 64581353 64582167 -57261689 - L1MB8 LINE L1 -1738 4408 3559 1 1077 1131 259 33 31 chr11 64582165 64582524 -57261332 + Lx9 LINE L1 6776 7135 -509 1 1077 294 272 107 20 chr11 64582571 64582730 -57261126 - L1MB8 LINE L1 -3667 2479 2308 1 1077 698 0 12 0 chr11 64582851 64582933 -57260923 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 1 1077 1117 159 5 26 chr11 64582988 64583182 -57260674 - URR1B DNA MER1_type -1 224 35 1 1077 425 250 10 10 chr11 64583207 64583308 -57260548 - PB1D7 SINE Alu -13 107 7 1 1077 270 0 0 0 chr11 64584169 64584199 -57259657 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1077 231 167 0 0 chr11 64584199 64584241 -57259615 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1077 1293 126 53 13 chr11 64586361 64586587 -57257269 + Lx2A1 LINE L1 6768 7002 -6 1 1077 710 247 24 152 chr11 64586881 64587091 -57256765 + B3A SINE B2 11 193 0 1 1077 189 139 0 0 chr11 64587298 64587341 -57256515 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1077 191 36 36 0 chr11 64588360 64588388 -57255468 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1077 27 81 0 0 chr11 64588818 64588880 -57254976 + AT_rich Low_complexity Low_complexity 1 62 0 1 1077 189 198 31 0 chr11 64588892 64588988 -57254868 + (TTAA)n Simple_repeat Simple_repeat 1 99 0 1 1077 279 0 0 0 chr11 64589242 64589273 -57254583 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1077 252 0 0 0 chr11 64589273 64589300 -57254556 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1077 291 28 0 0 chr11 64589300 64589335 -57254521 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1077 324 284 47 51 chr11 64589461 64589674 -57254182 + B4A SINE B4 5 277 -15 1 1077 234 0 0 0 chr11 64589739 64589765 -57254091 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1077 198 0 0 0 chr11 64589765 64589786 -57254070 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1077 489 34 0 0 chr11 64589786 64589844 -57254012 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1077 302 239 110 0 chr11 64590001 64590110 -57253746 + Lx6 LINE L1 7340 7460 0 1 1077 306 314 40 133 chr11 64590594 64590947 -57252909 + L1ME2 LINE L1 5706 6025 -139 1 1077 291 299 93 8 chr11 64591012 64591130 -57252726 + LTR33A LTR ERVL 385 512 -8 1 1077 695 302 62 21 chr11 64591339 64591626 -57252230 + L1MD2 LINE L1 5543 5845 -514 1 1077 441 0 0 0 chr11 64591626 64591675 -57252181 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1077 695 302 62 21 chr11 64591675 64591725 -57252131 + L1MD2 LINE L1 5846 5894 -465 1 1077 26 64 0 0 chr11 64592493 64592540 -57251316 + AT_rich Low_complexity Low_complexity 1 47 0 1 1077 1440 244 67 22 chr11 64592546 64592907 -57250949 + MTE2b LTR MaLR 3 379 0 1 1077 344 309 13 92 chr11 64593169 64593322 -57250534 - B3A SINE B2 0 216 76 1 1077 183 200 0 0 chr11 64593784 64593814 -57250042 - L2 LINE L2 -616 2803 2774 1 1077 213 355 76 48 chr11 64593881 64594026 -57249830 - B1F SINE Alu 0 149 1 1 1077 225 0 0 0 chr11 64594107 64594132 -57249724 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1077 486 61 0 0 chr11 64595107 64595173 -57248683 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1077 870 206 5 5 chr11 64596709 64596899 -57246957 + MTC-int LTR MaLR 1069 1258 0 1 1077 2587 156 39 7 chr11 64596899 64597307 -57246549 + MTC LTR MaLR 1 421 0 1 1077 1188 83 0 0 chr11 64598983 64599127 -57244729 + B1_Mus2 SINE Alu 2 145 -2 1 1077 343 314 14 46 chr11 64599484 64599749 -57244107 + L1_Rod LINE L1 1147 1403 -4444 1 1077 24 77 0 0 chr11 64599771 64599823 -57244033 + AT_rich Low_complexity Low_complexity 1 52 0 1 1077 26 30 0 0 chr11 64599841 64599874 -57243982 + AT_rich Low_complexity Low_complexity 1 33 0 1 1077 5801 295 81 37 chr11 64599974 64601983 -57241873 + L1_Mur3 LINE L1 1606 3662 -2218 1 1077 180 0 0 0 chr11 64601983 64602003 -57241853 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1077 5801 290 76 72 chr11 64602003 64603518 -57240338 + L1_Mur3 LINE L1 3663 5175 -968 1 1077 624 265 7 22 chr11 64603668 64603803 -57240053 - RSINE1 SINE B4 -22 143 11 1 1077 231 289 35 46 chr11 64603725 64603812 -57240044 - B2_Mm1t SINE B2 -107 86 1 1 1077 896 284 66 27 chr11 64604862 64605249 -57238607 - L1MA4A LINE L1 -373 5930 5496 1 1077 767 322 73 10 chr11 64605252 64605541 -57238315 - MTE2b LTR MaLR -2 377 71 1 1077 3119 6 2 149 chr11 64605546 64605976 -57237880 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1077 7355 87 106 39 chr11 64605978 64607258 -57236598 + IAPEz-int LTR ERVK 3 1313 -5168 1 1077 29722 16 1 0 chr11 64607257 64610525 -57233331 + IAPEz-int LTR ERVK 3210 6481 0 1 1077 3119 6 2 149 chr11 64610525 64610955 -57232901 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1077 233 271 17 0 chr11 64611086 64611145 -57232711 - MTE-int LTR MaLR -71 1299 1240 1 1077 295 299 0 61 chr11 64611247 64611329 -57232527 - MTE-int LTR MaLR -394 1186 1110 1 1077 598 212 12 0 chr11 64611329 64611494 -57232362 + CT-rich Low_complexity Low_complexity 1 167 0 1 1077 492 18 0 0 chr11 64611500 64611557 -57232299 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1077 678 315 143 24 chr11 64611559 64611852 -57232004 - MTE-int LTR MaLR -484 1096 769 1 1077 428 238 29 0 chr11 64612042 64612147 -57231709 + B3 SINE B2 7 114 -102 1 1077 581 255 20 34 chr11 64612143 64612289 -57231567 + B3 SINE B2 68 211 -5 1 1077 316 210 16 0 chr11 64612507 64612569 -57231287 - RSINE1 SINE B4 -23 142 80 1 1077 683 12 12 0 chr11 64612571 64612655 -57231201 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1077 231 261 72 0 chr11 64612684 64612753 -57231103 - B4 SINE B4 -213 79 6 1 1077 218 280 67 0 chr11 64612781 64612856 -57231000 + B1F1 SINE Alu 70 149 0 1 1077 441 0 0 0 chr11 64613948 64613997 -57229859 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1077 228 261 0 0 chr11 64615525 64615571 -57228285 + PB1 SINE Alu 74 119 -8 1 1077 284 261 0 55 chr11 64615587 64615660 -57228196 + ID4 SINE ID 1 69 -14 1 1077 180 228 0 0 chr11 64615704 64615761 -57228095 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1077 210 258 0 0 chr11 64615796 64615858 -57227998 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1077 246 374 9 9 chr11 64618028 64618136 -57225720 + MER63C DNA AcHobo 278 385 -545 1 1078 449 277 28 0 chr11 64619355 64619496 -57224360 - L1MC5 LINE L1 -525 7436 7292 1 1078 1193 64 0 0 chr11 64619739 64619879 -57223977 - B1_Mus1 SINE Alu -7 141 2 1 1078 966 256 35 0 chr11 64620139 64620338 -57223518 + B3 SINE B2 2 207 -9 1 1078 537 16 0 0 chr11 64620346 64620408 -57223448 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1078 268 254 182 78 chr11 64620411 64620488 -57223368 - B1_Mus1 SINE Alu -35 85 1 1 1078 238 172 156 31 chr11 64620823 64620919 -57222937 + L1MC LINE L1 4478 4585 -1561 1 1078 2108 17 0 0 chr11 64621360 64621595 -57222261 + L1Md_T LINE L1 5352 5586 -297 2 1078 8975 33 0 1 chr11 64621595 64622592 -57221264 + L1Md_T LINE L1 5587 6582 0 2 1078 352 216 0 108 chr11 64622597 64622680 -57221176 + B1F SINE Alu 42 115 -2 2 1078 758 259 8 38 chr11 64623335 64623559 -57220297 - ORR1D2 LTR MaLR -144 230 5 2 1078 459 283 92 77 chr11 64623821 64624016 -57219840 - B3A SINE B2 0 198 1 2 1078 589 309 0 0 chr11 64624798 64624947 -57218909 + B1F1 SINE Alu 1 149 0 2 1078 208 111 44 0 chr11 64624998 64625043 -57218813 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1078 1096 109 206 26 chr11 64625932 64626121 -57217735 - URR1A DNA MER1_type -3 223 1 2 1078 283 297 98 30 chr11 64626587 64626719 -57217137 + ORR1E LTR MaLR 52 192 -167 2 1078 585 28 0 0 chr11 64626928 64626999 -57216857 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1078 495 0 0 0 chr11 64626999 64627053 -57216803 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1078 617 296 0 0 chr11 64627055 64627190 -57216666 - RSINE1 SINE B4 -29 136 2 2 1078 523 236 47 7 chr11 64627225 64627374 -57216482 + Lx7 LINE L1 6066 6220 -1476 2 1078 283 231 40 95 chr11 64627434 64627582 -57216274 + Lx7 LINE L1 7460 7599 -97 2 1078 186 103 0 0 chr11 64627617 64627646 -57216210 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1078 498 136 0 0 chr11 64627962 64628043 -57215813 + (TTC)n Simple_repeat Simple_repeat 3 83 0 2 1078 1518 249 209 26 chr11 64629273 64629958 -57213898 - L1MC3 LINE L1 -19 7766 6957 2 1078 1272 226 42 15 chr11 64630032 64630297 -57213559 + MTD LTR MaLR 3 274 -145 2 1078 1159 141 42 0 chr11 64630337 64630529 -57213327 - L1_Mur2 LINE L1 -1558 4319 4120 2 1078 30863 114 39 4 chr11 64630618 64633655 -57210201 - L1_Mus3 LINE L1 -7 6631 3489 2 1078 621 0 0 0 chr11 64633655 64633724 -57210132 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 2 1078 30863 121 21 2 chr11 64633724 64636654 -57207202 - L1_Mus3 LINE L1 -2395 3488 492 2 1078 37 39 0 0 chr11 64636700 64636751 -57207105 + AT_rich Low_complexity Low_complexity 1 51 0 2 1078 370 147 54 34 chr11 64636768 64636916 -57206940 + (TA)n Simple_repeat Simple_repeat 1 151 0 2 1078 211 145 15 46 chr11 64636937 64637002 -57206854 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1078 772 346 78 19 chr11 64637178 64638066 -57205790 - L1MCb LINE L1 -5120 925 57 2 1078 226 279 0 0 chr11 64638105 64638166 -57205690 + HAL1 LINE L1 1602 1662 -845 2 1078 900 182 0 7 chr11 64638452 64638596 -57205260 + B1_Mus1 SINE Alu 6 148 0 2 1078 227 239 14 40 chr11 64638697 64638771 -57205085 + L1MEd LINE L1 78 149 -5970 2 1078 8202 54 0 0 chr11 64638981 64640157 -57203699 - L1Md_F2 LINE L1 -12 6570 5396 2 1078 5611 60 1 1 chr11 64640139 64640838 -57203018 + L1Md_F2 LINE L1 4714 5412 -471 2 1078 261 0 0 0 chr11 64641020 64641049 -57202807 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1078 444 250 75 33 chr11 64641461 64641581 -57202275 + B3A SINE B2 1 125 -73 2 1078 468 0 0 0 chr11 64641592 64641644 -57202212 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1078 396 271 108 72 chr11 64642387 64642582 -57201274 + Arthur1B DNA Tip100 61 262 -963 2 1078 282 308 98 60 chr11 64643540 64643806 -57200050 + Arthur1B DNA Tip100 850 1125 -100 2 1078 371 311 170 30 chr11 64644270 64644505 -57199351 + MLT1F-int LTR MaLR 890 1157 -332 2 1078 242 336 3 39 chr11 64644584 64644743 -57199113 + MLT1F LTR MaLR 413 558 -2 2 1078 958 281 107 52 chr11 64645204 64645550 -57198306 + MTE2b LTR MaLR 2 366 -13 2 1078 252 167 0 0 chr11 64646322 64646370 -57197486 + GA-rich Low_complexity Low_complexity 3 50 0 2 1078 507 33 0 0 chr11 64648864 64648925 -57194931 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1078 601 211 0 0 chr11 64648925 64649029 -57194827 - MTD LTR MaLR -303 116 13 2 1078 3460 233 106 56 chr11 64649061 64649286 -57194570 - MTD-int LTR MaLR -3 1255 1001 2 1078 288 0 0 0 chr11 64649286 64649318 -57194538 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1078 207 0 0 0 chr11 64649318 64649340 -57194516 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1078 3460 237 105 55 chr11 64649340 64650304 -57193552 - MTD-int LTR MaLR -258 1000 1 2 1078 1150 247 87 16 chr11 64650304 64650530 -57193326 - MTD LTR MaLR 0 419 168 2 1078 198 0 0 0 chr11 64650530 64650552 -57193304 + (TGG)n Simple_repeat Simple_repeat 2 23 0 2 1078 1150 247 87 16 chr11 64650552 64650695 -57193161 - MTD LTR MaLR -252 167 24 2 1078 685 276 90 21 chr11 64651214 64651535 -57192321 - Lx8 LINE L1 -502 5789 5476 2 1078 433 328 15 23 chr11 64651564 64651695 -57192161 - ID_B1 SINE B4 -2 222 93 2 1078 389 272 8 59 chr11 64651695 64651933 -57191923 - Lx8 LINE L1 -809 5482 5257 2 1078 246 208 0 0 chr11 64651943 64651996 -57191860 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1078 374 242 108 39 chr11 64651996 64652125 -57191731 - Lx8 LINE L1 -874 5269 5132 2 1078 616 251 94 63 chr11 64652375 64652566 -57191290 + B3A SINE B2 1 197 -1 2 1078 229 191 24 0 chr11 64652566 64652608 -57191248 + GA-rich Low_complexity Low_complexity 1 43 0 2 1078 368 256 41 33 chr11 64652796 64652917 -57190939 - MER77 LTR ERVL -11 596 475 2 1078 26 30 0 0 chr11 64653930 64653963 -57189893 + AT_rich Low_complexity Low_complexity 1 33 0 2 1078 417 172 37 90 chr11 64654260 64654394 -57189462 + LTR81B LTR ERV1? 69 195 -1198 2 1078 1290 206 144 16 chr11 64654441 64654761 -57189095 - MTD LTR MaLR -58 361 1 2 1078 249 33 0 0 chr11 64655020 64655050 -57188806 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1078 555 154 0 0 chr11 64655363 64655441 -57188415 + B1_Mus2 SINE Alu 1 78 -69 2 1078 183 100 0 0 chr11 64655494 64655524 -57188332 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 1078 234 167 0 0 chr11 64655526 64655562 -57188294 - ORR1D2 LTR MaLR -332 38 3 2 1078 246 297 0 0 chr11 64655643 64655707 -57188149 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 2 1078 276 235 133 29 chr11 64656396 64656501 -57187355 + LFSINE_Vert SINE SINE 297 412 -47 2 1078 1398 246 92 32 chr11 64657000 64657404 -57186452 + Lx5 LINE L1 6607 7034 -16 2 1078 183 100 0 0 chr11 64657404 64657434 -57186422 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 1078 234 167 0 0 chr11 64657436 64657472 -57186384 - ORR1D2 LTR MaLR -332 38 3 2 1078 577 290 25 19 chr11 64657528 64657686 -57186170 - RSINE1 SINE B4 -5 160 2 2 1078 1139 258 71 11 chr11 64657878 64658231 -57185625 + Lx9 LINE L1 7224 7597 -47 2 1078 1486 75 21 0 chr11 64658318 64658506 -57185350 + B2_Mm2 SINE B2 2 193 -2 2 1078 691 195 102 0 chr11 64659135 64659263 -57184593 - B1_Mur3 SINE Alu -7 142 2 2 1078 271 245 6 32 chr11 64659350 64659506 -57184350 + (ATTG)n Simple_repeat Simple_repeat 1 152 0 2 1078 603 277 43 0 chr11 64659519 64659660 -57184196 - RSINE1 SINE B4 -17 148 2 2 1078 309 281 115 106 chr11 64659695 64660017 -57183839 + L1M5 LINE L1 3292 3616 -2530 2 1078 2206 145 122 0 chr11 64660706 64661057 -57182799 + ORR1B1 LTR MaLR 1 394 0 2 1078 1463 55 71 0 chr11 64661276 64661458 -57182398 + B2_Mm2 SINE B2 1 195 0 2 1078 188 383 113 10 chr11 64661575 64661778 -57182078 - L2 LINE L2 -553 2866 2643 2 1078 539 308 0 46 chr11 64662195 64662348 -57181508 + RSINE1 SINE B4 8 153 -12 2 1078 267 31 0 0 chr11 64662370 64662402 -57181454 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1078 404 313 80 20 chr11 64662987 64663137 -57180719 + RSINE1 SINE B4 2 160 -5 2 1078 1213 62 7 0 chr11 64663431 64663576 -57180280 - B1_Mus1 SINE Alu -1 147 2 2 1078 397 280 8 56 chr11 64663591 64663716 -57180140 + PB1D7 SINE Alu 1 119 -1 2 1078 371 313 162 26 chr11 64663922 64664342 -57179514 + L1M4 LINE L1 5318 5794 -380 2 1078 1201 270 30 57 chr11 64664349 64664718 -57179138 - ORR1E LTR MaLR 0 359 1 2 1078 1545 301 70 33 chr11 64664781 64664987 -57178869 - Lx8 LINE L1 -18 7455 7235 2 1078 4463 26 44 0 chr11 64664987 64665483 -57178373 + L1Md_A LINE L1 6065 6582 0 2 1078 1545 301 70 33 chr11 64665483 64665556 -57178300 - Lx8 LINE L1 -239 7234 7172 2 1078 2751 118 34 3 chr11 64665556 64665938 -57177918 + ORR1B1 LTR MaLR 1 394 0 2 1078 1545 301 70 33 chr11 64665938 64666172 -57177684 - Lx8 LINE L1 -302 7171 6922 2 1078 1290 206 123 40 chr11 64666511 64666636 -57177220 - Lx9 LINE L1 -1 7643 7517 2 1078 261 0 0 0 chr11 64666636 64666665 -57177191 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1078 1290 206 123 40 chr11 64666665 64666938 -57176918 - Lx9 LINE L1 -128 7516 7212 2 1078 21 57 0 0 chr11 64666938 64666973 -57176883 + AT_rich Low_complexity Low_complexity 1 35 0 2 1078 21 36 0 0 chr11 64667057 64667085 -57176771 + AT_rich Low_complexity Low_complexity 1 28 0 2 1078 1233 282 50 8 chr11 64667317 64667674 -57176182 - Lx8 LINE L1 -840 6633 6262 2 1078 1429 181 26 8 chr11 64668244 64668512 -57175344 - MTC LTR MaLR -8 413 141 2 1078 964 216 9 45 chr11 64669629 64669852 -57174004 - B3 SINE B2 0 216 2 2 1078 470 291 66 16 chr11 64670813 64671028 -57172828 + MLT1C LTR MaLR 263 503 -2 2 1078 896 256 50 11 chr11 64671229 64671277 -57172579 - B4 SINE B4 -19 273 225 2 1078 264 30 0 0 chr11 64671277 64671310 -57172546 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1078 896 256 50 11 chr11 64671310 64671522 -57172334 - B4 SINE B4 -68 224 5 2 1078 441 302 0 7 chr11 64673281 64673421 -57170435 - MER117 DNA MER1_type -51 146 8 2 1078 267 31 0 0 chr11 64673423 64673455 -57170401 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1078 327 195 116 25 chr11 64674214 64674335 -57169521 + MLT1A1 LTR MaLR 272 403 -5 2 1078 1096 310 37 8 chr11 64675859 64676239 -57167617 - MTE-int LTR MaLR -1169 411 21 2 1078 1104 343 43 28 chr11 64676203 64676712 -57167144 - MLT2B3 LTR ERVL -37 517 1 2 1078 308 294 0 32 chr11 64676888 64677011 -57166845 + L1MCa LINE L1 2206 2324 -4184 2 1078 381 214 146 0 chr11 64677244 64677347 -57166509 - PB1D7 SINE Alu 0 120 3 2 1078 488 274 8 30 chr11 64677396 64677528 -57166328 - B1F SINE Alu -10 139 11 2 1078 539 281 14 0 chr11 64677558 64677697 -57166159 - B1F SINE Alu -8 141 1 2 1078 1190 261 108 96 chr11 64677697 64678378 -57165478 + L1MCa LINE L1 2310 3004 -3317 2 1078 1199 55 0 0 chr11 64678378 64678524 -57165332 + B1_Mus2 SINE Alu 1 146 -1 2 1078 894 112 0 0 chr11 64678524 64678684 -57165172 + (GGGAGA)n Simple_repeat Simple_repeat 3 162 0 2 1078 1190 261 108 96 chr11 64678684 64678748 -57165108 + L1MCa LINE L1 3005 3048 -3273 2 1078 838 190 207 0 chr11 64678748 64678927 -57164929 + B3 SINE B2 1 216 0 2 1078 1190 265 89 52 chr11 64678927 64679476 -57164380 + L1MCa LINE L1 3049 3679 -2642 2 1078 609 290 20 54 chr11 64679477 64679681 -57164175 + B3A SINE B2 1 197 -1 2 1078 391 80 0 0 chr11 64679702 64679752 -57164104 - L1_Mur1 LINE L1 -1383 4503 4454 2 1078 7239 113 13 47 chr11 64679746 64680715 -57163141 + L1_Mus4 LINE L1 4700 5655 -981 2 1078 258 86 0 0 chr11 64680715 64680750 -57163106 - U2 snRNA snRNA -153 35 1 3 1078 7239 113 13 47 chr11 64680750 64681743 -57162113 + L1_Mus4 LINE L1 5656 6636 0 2 1078 233 270 45 9 chr11 64681745 64681857 -57161999 + L1MC1 LINE L1 3491 3606 -2540 3 1078 303 224 0 0 chr11 64681985 64682061 -57161795 + GA-rich Low_complexity Low_complexity 2 77 0 3 1078 744 133 0 53 chr11 64682093 64682212 -57161644 + polypurine Low_complexity Low_complexity 1 113 0 3 1078 1535 0 0 6 chr11 64682212 64682388 -57161468 + (GAA)n Simple_repeat Simple_repeat 3 177 0 3 1078 744 133 0 53 chr11 64682388 64682458 -57161398 + polypurine Low_complexity Low_complexity 114 180 0 3 1078 1486 144 47 241 chr11 64682485 64682953 -57160903 + ORR1C1 LTR MaLR 1 377 -1 3 1078 1383 257 10 58 chr11 64683223 64683441 -57160415 - MTE2b LTR MaLR 0 379 173 3 1078 3408 139 19 52 chr11 64683441 64684023 -57159833 + RLTR12A LTR ERVK 2 564 -4 3 1078 1383 257 10 58 chr11 64684023 64684200 -57159656 - MTE2b LTR MaLR -207 172 3 3 1078 238 324 29 0 chr11 64684207 64684312 -57159544 + L1MC1 LINE L1 4067 4174 -1972 3 1078 24 67 0 0 chr11 64684583 64684628 -57159228 + AT_rich Low_complexity Low_complexity 1 45 0 3 1078 207 139 0 0 chr11 64684710 64684746 -57159110 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1078 1436 304 96 10 chr11 64684987 64685601 -57158255 + L1MC1 LINE L1 5620 6286 -47 3 1078 251 354 26 9 chr11 64685639 64685753 -57158103 + B4 SINE B4 2 117 -175 3 1078 27 0 0 0 chr11 64685868 64685895 -57157961 + AT_rich Low_complexity Low_complexity 1 27 0 3 1078 4150 129 122 1 chr11 64685911 64686569 -57157287 + RMER19A LTR ERVK 1 737 0 3 1078 217 312 0 15 chr11 64686655 64686720 -57157136 - PB1D10 SINE Alu -9 108 45 3 1078 2491 295 51 24 chr11 64686826 64687672 -57156184 + Lx8 LINE L1 6294 7162 -311 3 1078 223 263 66 0 chr11 64687704 64687780 -57156076 + PB1D9 SINE Alu 35 115 -5 3 1078 1058 271 57 57 chr11 64688979 64689350 -57154506 + Lx8 LINE L1 6329 6699 -774 3 1078 1908 282 23 53 chr11 64689343 64689990 -57153866 + Lx8 LINE L1 6844 7471 -2 3 1078 405 0 0 0 chr11 64690142 64690187 -57153669 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1078 293 234 39 0 chr11 64690187 64690264 -57153592 - Lx9 LINE L1 -168 7476 7397 3 1078 521 313 0 0 chr11 64690263 64690410 -57153446 + Lx9 LINE L1 7196 7342 -302 3 1078 2063 118 18 58 chr11 64690424 64690767 -57153089 + ORR1A4 LTR MaLR 1 329 0 3 1078 817 194 120 0 chr11 64690777 64690968 -57152888 + B3 SINE B2 3 216 0 3 1078 183 162 0 0 chr11 64691013 64691050 -57152806 + A-rich Low_complexity Low_complexity 2 38 0 3 1078 6570 61 11 0 chr11 64691260 64692059 -57151797 - RLTR13C2 LTR ERVK 0 808 1 3 1078 477 221 0 0 chr11 64692134 64692229 -57151627 + B1F SINE Alu 43 137 -12 3 1078 202 0 59 29 chr11 64692229 64692263 -57151593 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3 1078 387 306 0 24 chr11 64693621 64693745 -57150111 + MTEa LTR MaLR 254 374 -5 3 1078 261 244 39 0 chr11 64693837 64693915 -57149941 + GA-rich Low_complexity Low_complexity 4 84 0 3 1078 782 156 290 12 chr11 64695259 64695428 -57148428 + B3 SINE B2 1 216 0 3 1078 369 62 0 0 chr11 64695812 64695860 -57147996 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 3 1078 333 0 0 0 chr11 64695871 64695908 -57147948 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1078 243 296 45 36 chr11 64696687 64696799 -57147057 + MIRb SINE MIR 34 146 -122 3 1078 480 18 0 0 chr11 64698452 64698509 -57145347 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1078 351 0 0 0 chr11 64698509 64698547 -57145309 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1078 215 245 51 0 chr11 64698588 64698686 -57145170 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 1078 180 0 0 0 chr11 64699903 64699923 -57143933 + (CAGCT)n Simple_repeat Simple_repeat 5 24 0 3 1078 320 227 166 29 chr11 64701245 64701392 -57142464 - B3A SINE B2 0 216 58 3 1078 506 279 50 0 chr11 64701428 64701568 -57142288 - B1_Mur1 SINE Alu -1 148 2 3 1078 1154 45 19 30 chr11 64702290 64702655 -57141201 + (TC)n Simple_repeat Simple_repeat 1 361 0 3 1078 315 71 0 0 chr11 64702655 64702697 -57141159 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1078 1167 162 9 57 chr11 64703722 64703951 -57139905 - URR1B DNA MER1_type 0 225 8 3 1078 235 276 93 40 chr11 64704018 64704169 -57139687 + L1MC4a LINE L1 5932 6090 -243 3 1078 752 205 161 5 chr11 64704383 64704569 -57139287 + B3 SINE B2 2 216 0 3 1078 315 325 82 46 chr11 64705047 64705266 -57138590 + L1MC4a LINE L1 6561 6787 -1095 3 1078 546 249 236 20 chr11 64705393 64705571 -57138285 + L1MC4a LINE L1 6823 7043 -839 3 1078 234 0 0 0 chr11 64705571 64705597 -57138259 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1078 546 249 236 20 chr11 64705597 64705774 -57138082 + L1MC4a LINE L1 7044 7254 -628 3 1078 280 317 114 18 chr11 64705829 64705996 -57137860 + L1MC4a LINE L1 7239 7421 -461 3 1078 537 30 0 0 chr11 64706345 64706412 -57137444 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1078 646 242 34 200 chr11 64706430 64706750 -57137106 - B4 SINE B4 -18 274 8 3 1078 2791 33 0 18 chr11 64707206 64707547 -57136309 - L1Md_F2 LINE L1 -1 6581 6247 3 1078 43 47 0 0 chr11 64707591 64707655 -57136201 + AT_rich Low_complexity Low_complexity 1 64 0 3 1078 186 43 0 0 chr11 64707748 64707771 -57136085 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 3 1078 492 72 0 0 chr11 64707812 64707881 -57135975 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1078 226 288 65 50 chr11 64708228 64708367 -57135489 - L3 LINE CR1 -1883 2606 2466 3 1078 369 0 0 0 chr11 64708590 64708631 -57135225 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1078 321 26 0 0 chr11 64708699 64708737 -57135119 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1078 736 196 0 0 chr11 64709058 64709196 -57134660 - B1_Mur4 SINE Alu -5 145 8 3 1078 423 0 0 0 chr11 64709280 64709327 -57134529 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1078 529 248 25 37 chr11 64709411 64709574 -57134282 + RSINE1 SINE B4 5 165 0 3 1078 26 30 0 0 chr11 64710273 64710306 -57133550 + AT_rich Low_complexity Low_complexity 1 33 0 3 1078 243 316 102 0 chr11 64710400 64710498 -57133358 - ORR1E LTR MaLR -250 109 2 3 1078 423 0 0 0 chr11 64710507 64710554 -57133302 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1078 631 279 67 19 chr11 64711234 64711442 -57132414 - Lx8 LINE L1 -327 7146 6929 3 1078 261 0 0 0 chr11 64711561 64711590 -57132266 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 1078 501 17 0 0 chr11 64711987 64712045 -57131811 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1078 445 294 58 63 chr11 64714567 64714741 -57129115 - MTEa LTR MaLR -206 173 1 3 1078 307 305 73 37 chr11 64714796 64714932 -57128924 - MLT1A1 LTR MaLR 0 408 268 3 1078 507 220 17 17 chr11 64715619 64715739 -57128117 + PB1D9 SINE Alu 1 120 0 3 1078 231 364 9 0 chr11 64717531 64717641 -57126215 - MER57C2 LTR ERV1 -2 432 322 3 1078 265 186 24 72 chr11 64718299 64718382 -57125474 - RMER13A LTR ERVK -188 328 213 3 1078 329 257 61 26 chr11 64719274 64719432 -57124424 - MER34 LTR ERV1 -71 500 336 3 1078 1323 254 16 211 chr11 64719766 64720525 -57123331 + RMER19C LTR ERVK 1 611 0 3 1078 666 280 83 73 chr11 64720672 64720961 -57122895 + B4A SINE B4 1 292 0 3 1078 321 283 167 24 chr11 64721013 64721223 -57122633 + MER89 LTR ERV1 304 543 -16 3 1078 391 309 129 21 chr11 64721549 64721790 -57122066 + LTR48 LTR ERV1 516 782 -5 3 1078 2594 184 72 48 chr11 64722166 64722581 -57121275 - RMER6C LTR ERVK 0 720 433 3 1078 306 0 0 0 chr11 64722581 64722615 -57121241 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 1078 2594 179 78 26 chr11 64722615 64722726 -57121130 - RMER6C LTR ERVK -230 460 351 3 1078 441 0 0 0 chr11 64722726 64722775 -57121081 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1078 354 23 0 0 chr11 64722775 64722817 -57121039 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1078 2594 179 78 26 chr11 64722817 64723129 -57120727 - RMER6C LTR ERVK -340 350 5 3 1078 485 328 6 33 chr11 64723153 64723336 -57120520 + B4A SINE B4 115 292 0 3 1078 1184 187 101 50 chr11 64724505 64724803 -57119053 + MT2A LTR ERVL 1 313 -220 3 1078 921 134 0 0 chr11 64724803 64724952 -57118904 + (CA)n Simple_repeat Simple_repeat 2 150 0 3 1078 1812 98 45 0 chr11 64725542 64725808 -57118048 + ORR1A2 LTR MaLR 49 326 -1 3 1078 399 265 216 40 chr11 64725950 64726320 -57117536 + MER31A LTR ERV1 51 485 0 3 1078 1260 183 60 38 chr11 64727076 64727343 -57116513 - MTC LTR MaLR 0 421 149 3 1078 947 243 80 0 chr11 64727363 64727647 -57116209 + MTEb LTR MaLR 75 379 0 3 1078 226 329 38 0 chr11 64728224 64728303 -57115553 - PB1D7 SINE Alu -6 114 33 3 1078 393 22 0 0 chr11 64728391 64728437 -57115419 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1078 21 0 0 0 chr11 64728437 64728458 -57115398 + AT_rich Low_complexity Low_complexity 1 21 0 3 1078 313 255 90 20 chr11 64728630 64728730 -57115126 + PB1D10 SINE Alu 3 109 -8 3 1078 292 348 0 21 chr11 64729523 64729664 -57114192 + MIR SINE MIR 35 172 -90 3 1078 2257 184 19 17 chr11 64729871 64730291 -57113565 + MTC LTR MaLR 1 421 0 3 1078 285 246 0 0 chr11 64731537 64731598 -57112258 + B1F2 SINE Alu 1 61 -88 3 1078 252 241 35 0 chr11 64731641 64731699 -57112157 + ID4 SINE ID 5 64 -19 3 1078 594 309 67 49 chr11 64732377 64732721 -57111135 - ORR1E LTR MaLR -6 353 4 3 1078 1918 171 46 5 chr11 64732831 64733202 -57110654 - ORR1B1 LTR MaLR -8 386 1 3 1078 259 264 0 0 chr11 64733202 64733255 -57110601 + B4A SINE B4 50 102 -190 3 1078 307 284 12 0 chr11 64733367 64733448 -57110408 + Lx8 LINE L1 6400 6481 -992 3 1078 930 180 0 0 chr11 64733454 64733632 -57110224 + CT-rich Low_complexity Low_complexity 1 178 0 3 1078 537 212 0 0 chr11 64733820 64733938 -57109918 + (TATATG)n Simple_repeat Simple_repeat 6 123 0 3 1078 1698 262 118 55 chr11 64733940 64734368 -57109488 + Lx8 LINE L1 6572 7007 -466 3 1078 405 0 0 0 chr11 64734368 64734413 -57109443 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1078 1698 262 118 55 chr11 64734413 64734663 -57109193 + Lx8 LINE L1 7008 7293 -180 3 1078 270 148 0 0 chr11 64734682 64734736 -57109120 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 3 1078 501 17 0 0 chr11 64735122 64735180 -57108676 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1078 387 0 0 0 chr11 64735180 64735222 -57108634 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1078 408 304 32 0 chr11 64736439 64736597 -57107259 + (CATA)n Simple_repeat Simple_repeat 4 166 0 4 1078 4127 129 113 18 chr11 64736861 64737531 -57106325 - RMER19A LTR ERVK -3 734 1 4 1078 513 0 0 0 chr11 64739156 64739213 -57104643 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1078 407 263 60 8 chr11 64740530 64740664 -57103192 - B1F SINE Alu -8 141 1 4 1078 597 296 49 26 chr11 64742044 64742308 -57101548 + MER58B DNA MER1_type 57 326 -15 4 1078 487 287 79 39 chr11 64742441 64742644 -57101212 + B3A SINE B2 1 211 -5 4 1078 269 325 77 66 chr11 64742728 64742909 -57100947 + MLT1A LTR MaLR 64 246 -128 4 1078 387 0 0 0 chr11 64743373 64743416 -57100440 + (TAA)n Simple_repeat Simple_repeat 2 44 0 4 1078 207 0 0 0 chr11 64743745 64743768 -57100088 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1078 595 286 21 0 chr11 64745497 64745689 -57098167 - L1MA4 LINE L1 0 6300 6105 4 1078 381 281 63 81 chr11 64745690 64745864 -57097992 + RMER5 LTR ERV1 1 171 -363 4 1078 725 263 14 9 chr11 64746001 64746216 -57097640 + MTD LTR MaLR 1 216 -205 4 1078 752 68 0 0 chr11 64746202 64746305 -57097551 + B1_Mus2 SINE Alu 43 145 -2 4 1078 835 257 3 5 chr11 64746334 64746554 -57097302 + MTD LTR MaLR 186 405 -14 4 1078 771 229 40 5 chr11 64746562 64746760 -57097096 + RMER5 LTR ERV1 330 534 0 4 1078 1306 277 120 24 chr11 64746830 64747592 -57096264 - L1MA4 LINE L1 -380 5920 5081 4 1078 182 105 0 26 chr11 64748419 64748458 -57095398 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1078 310 336 35 21 chr11 64748621 64748764 -57095092 + MIRc SINE MIR 19 163 -105 4 1078 332 222 12 47 chr11 64749221 64749306 -57094550 + ID4_ SINE ID 1 82 -1 4 1079 364 246 8 8 chr11 64750040 64750163 -57093693 + (CATATA)n Simple_repeat Simple_repeat 5 127 0 4 1079 516 248 0 0 chr11 64750168 64750273 -57093583 + PB1 SINE Alu 21 125 -2 4 1079 1267 118 11 5 chr11 64751774 64751962 -57091894 - B2_Mm1t SINE B2 -3 190 2 4 1079 636 292 64 111 chr11 64751994 64752371 -57091485 - ORR1E LTR MaLR 0 359 1 4 1079 385 284 89 30 chr11 64752974 64753177 -57090679 - MIRb SINE MIR -30 238 24 4 1079 226 312 48 77 chr11 64753263 64753328 -57090528 + RSINE1 SINE B4 65 126 -39 4 1079 387 0 0 0 chr11 64753328 64753371 -57090485 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1079 226 312 48 77 chr11 64753371 64753409 -57090447 + RSINE1 SINE B4 127 165 0 4 1079 249 293 0 13 chr11 64753522 64753598 -57090258 + PB1D10 SINE Alu 34 108 -9 4 1079 198 0 0 0 chr11 64753818 64753840 -57090016 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1079 338 337 60 46 chr11 64753843 64754322 -57089534 + L1M5 LINE L1 4512 4997 -1149 4 1079 329 164 24 48 chr11 64754640 64754723 -57089133 + PB1D10 SINE Alu 37 117 0 4 1079 1934 173 91 8 chr11 64755525 64755910 -57087946 - MTC LTR MaLR -4 417 1 4 1079 787 44 0 0 chr11 64756072 64756162 -57087694 + L1Md_F2 LINE L1 5497 5586 -297 4 1079 8260 45 1 1 chr11 64756162 64757145 -57086711 + L1Md_F2 LINE L1 5587 6569 -13 4 1079 24 0 0 0 chr11 64757176 64757200 -57086656 + AT_rich Low_complexity Low_complexity 1 24 0 4 1079 236 268 94 35 chr11 64758542 64758627 -57085229 - MIRc SINE MIR -25 243 154 4 1079 1914 174 64 0 chr11 64758798 64759142 -57084714 - ORR1B2 LTR MaLR -1 366 1 4 1079 244 333 140 18 chr11 64759183 64759354 -57084502 + MIRb SINE MIR 54 245 -23 4 1079 220 300 86 0 chr11 64760315 64760385 -57083471 + ID4 SINE ID 8 83 0 4 1079 630 188 24 20 chr11 64760416 64760710 -57083146 + GA-rich Low_complexity Low_complexity 1 294 0 4 1079 571 306 55 80 chr11 64760722 64760996 -57082860 + B4 SINE B4 2 268 -24 4 1079 920 270 184 34 chr11 64761236 64761845 -57082011 - RMER13A LTR ERVK -38 870 106 4 1079 198 0 0 0 chr11 64761956 64761978 -57081878 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1079 1669 198 46 8 chr11 64762199 64762228 -57081628 + ORR1A2 LTR MaLR 14 41 -353 4 1079 198 0 0 0 chr11 64762228 64762250 -57081606 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1079 2168 93 4 21 chr11 64762250 64762587 -57081269 + ORR1A2 LTR MaLR 6 394 0 4 1079 490 274 71 19 chr11 64762688 64762900 -57080956 + MER44A DNA MER2_type 79 301 -38 4 1079 508 307 49 15 chr11 64764001 64764206 -57079650 + MIR SINE MIR 32 243 -19 4 1079 21 0 0 0 chr11 64764762 64764783 -57079073 + AT_rich Low_complexity Low_complexity 1 21 0 4 1079 494 224 64 64 chr11 64765168 64765325 -57078531 - MLT1A0 LTR MaLR 0 365 209 4 1079 537 68 0 0 chr11 64765818 64765892 -57077964 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1079 324 0 0 0 chr11 64766418 64766454 -57077402 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1079 662 268 20 30 chr11 64767592 64767792 -57076064 + B3A SINE B2 1 198 0 4 1079 209 288 119 46 chr11 64767931 64768040 -57075816 - MER5A DNA MER1_type -70 119 3 4 1079 270 0 0 0 chr11 64768515 64768545 -57075311 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1079 234 91 0 0 chr11 64768545 64768577 -57075279 + (CG)n Simple_repeat Simple_repeat 1 33 0 4 1079 351 0 0 0 chr11 64769411 64769450 -57074406 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1079 1034 66 0 0 chr11 64769718 64769854 -57074002 + B1_Mus1 SINE Alu 13 148 0 4 1079 438 36 0 0 chr11 64771811 64771867 -57071989 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1079 498 282 11 33 chr11 64772108 64772288 -57071568 + Tigger5 DNA MER2_type 2137 2312 -94 4 1079 279 0 0 0 chr11 64772547 64772578 -57071278 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 1079 685 324 14 9 chr11 64772859 64773074 -57070782 - B3 SINE B2 0 216 1 4 1079 1504 159 145 9 chr11 64773216 64773534 -57070322 - ORR1B2 LTR MaLR -2 365 5 4 1079 456 320 120 29 chr11 64773786 64774027 -57069829 - MER21B LTR ERV1 -135 728 466 4 1079 1400 191 110 36 chr11 64774144 64774534 -57069322 - MTD LTR MaLR 0 419 1 4 1079 647 306 39 17 chr11 64774644 64774877 -57068979 - MER21B LTR ERV1 -625 238 1 4 1079 319 306 7 36 chr11 64774878 64775017 -57068839 + MER112 DNA MER1_type 123 257 -4 4 1079 356 350 72 0 chr11 64775017 64775197 -57068659 + LTR33C LTR ERVL 396 588 -41 4 1079 2830 50 12 3 chr11 64775741 64776084 -57067772 + ORR1A1 LTR MaLR 1 346 0 4 1079 393 318 134 47 chr11 64778338 64778592 -57065264 - LTR16A1 LTR ERVL -1 455 180 4 1079 399 342 78 52 chr11 64778796 64779027 -57064829 - MER34A LTR ERV1 -334 237 1 4 1079 382 347 47 12 chr11 64779149 64779321 -57064535 + MIR SINE MIR 44 221 -41 4 1079 363 306 107 66 chr11 64779505 64779688 -57064168 + MLT1D LTR MaLR 19 209 -296 4 1079 325 344 0 0 chr11 64779688 64779788 -57064068 + PB1D7 SINE Alu 1 100 -49 4 1079 331 267 22 11 chr11 64780791 64780882 -57062974 + MER5A DNA MER1_type 24 115 -74 4 1079 481 281 36 36 chr11 64781343 64781483 -57062373 - ID_B1 SINE B4 -1 223 84 4 1079 218 351 0 0 chr11 64781649 64781706 -57062150 + L2b LINE L2 3238 3294 -81 4 1079 259 306 19 48 chr11 64781789 64781892 -57061964 - MER117 DNA MER1_type -58 139 40 4 1079 680 325 7 115 chr11 64783072 64783368 -57060488 + B4A SINE B4 1 264 -28 4 1079 558 245 42 21 chr11 64783449 64783591 -57060265 + B1F SINE Alu 3 147 -2 4 1079 235 284 86 0 chr11 64783656 64783737 -57060119 + MamGypLTR1c LTR Gypsy 124 211 -592 4 1079 482 309 65 0 chr11 64783900 64784039 -57059817 + B3A SINE B2 4 151 -47 4 1079 198 0 0 0 chr11 64784053 64784075 -57059781 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1079 1918 169 92 24 chr11 64784075 64784446 -57059410 - MTD LTR MaLR 0 419 22 4 1079 327 65 0 0 chr11 64784446 64784492 -57059364 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1079 251 269 86 9 chr11 64784851 64784956 -57058900 + MLT2C1 LTR ERVL 1 113 -284 4 1079 754 254 156 40 chr11 64784953 64785269 -57058587 - ORR1D2 LTR MaLR -4 375 1 4 1079 611 207 2 22 chr11 64785429 64785580 -57058276 + MurERV4_19-int LTR ERVK 5274 5395 -385 4 1079 362 270 68 17 chr11 64785583 64785700 -57058156 + RMER4A LTR ERVK 308 430 -36 4 1079 3848 210 60 53 chr11 64785831 64786883 -57056973 + MYSERV-int LTR ERVK 5374 6438 -112 4 1079 1078 93 14 0 chr11 64786883 64787023 -57056833 - B1_Mus1 SINE Alu -5 143 2 4 1079 3848 210 60 53 chr11 64787023 64787134 -57056722 + MYSERV-int LTR ERVK 6439 6545 -5 4 1079 1918 148 31 17 chr11 64787140 64787491 -57056365 + RLTR15 LTR ERVK 4 359 0 4 1079 235 333 73 113 chr11 64788487 64788788 -57055068 + MLT1H2 LTR MaLR 197 485 -4 4 1079 382 250 25 0 chr11 64789025 64789105 -57054751 + B4A SINE B4 3 84 -208 4 1079 242 286 53 42 chr11 64789105 64789120 -57054736 + B3A SINE B2 3 98 -100 4 1079 900 161 7 0 chr11 64789567 64789710 -57054146 - B1_Mus1 SINE Alu -1 147 4 4 1079 950 151 14 7 chr11 64789757 64789904 -57053952 + B1_Mur2 SINE Alu 2 149 0 4 1079 891 189 0 0 chr11 64790227 64790370 -57053486 + B1_Mus1 SINE Alu 1 143 -5 4 1079 360 0 0 0 chr11 64790370 64790410 -57053446 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1079 253 294 64 21 chr11 64791068 64791162 -57052694 - B2_Mm2 SINE B2 -97 98 1 4 1079 271 152 0 21 chr11 64791213 64791260 -57052596 - ID_B1 SINE B4 -10 214 169 4 1079 249 250 58 77 chr11 64791260 64791317 -57052539 - B1F SINE Alu -10 139 38 4 1079 2834 182 16 6 chr11 64791436 64791939 -57051917 + RLTR28 LTR ERVL 3 510 -14 4 1079 494 31 16 0 chr11 64793976 64794040 -57049816 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1079 351 355 68 28 chr11 64794309 64794486 -57049370 + MIRb SINE MIR 82 265 -3 4 1079 660 186 293 0 chr11 64795364 64795531 -57048325 - B3 SINE B2 0 216 1 4 1079 194 130 0 61 chr11 64795825 64795874 -57047982 + C-rich Low_complexity Low_complexity 1 46 0 4 1079 596 86 12 0 chr11 64797287 64797368 -57046488 + B2_Mm2 SINE B2 1 82 -113 5 1079 230 281 161 34 chr11 64797401 64797519 -57046337 - L1MA7 LINE L1 -245 6046 5914 5 1079 507 277 32 45 chr11 64798071 64798226 -57045630 + RSINE1 SINE B4 3 155 -10 5 1079 276 330 72 18 chr11 64798466 64798577 -57045279 - PB1D10 SINE Alu 0 117 1 5 1079 1256 57 36 93 chr11 64798668 64798793 -57045063 + B2_Mm2 SINE B2 8 115 -80 5 1079 772 103 17 25 chr11 64798793 64798913 -57044943 - PB1D9 SINE Alu 0 120 2 5 1079 1256 57 36 93 chr11 64798913 64798980 -57044876 + B2_Mm2 SINE B2 116 189 -6 5 1079 198 242 81 0 chr11 64799425 64799487 -57044369 + L4 LINE RTE 1382 1448 -581 5 1079 286 280 13 26 chr11 64799544 64799621 -57044235 - ID4 SINE ID -7 76 1 5 1079 216 217 0 21 chr11 64799628 64799675 -57044181 - PB1 SINE Alu -2 125 80 5 1079 603 39 0 0 chr11 64801870 64801948 -57041908 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1079 255 250 111 0 chr11 64802229 64802301 -57041555 - ID4 SINE ID -2 81 2 5 1079 287 281 45 0 chr11 64802301 64802402 -57041454 - PB1D10 SINE Alu -2 118 9 5 1079 228 300 100 0 chr11 64802992 64803062 -57040794 - RLTR20B1 LTR ERVK 0 563 487 5 1079 1845 177 137 17 chr11 64803092 64803738 -57040118 - MYSERV16_I-int LTR ERVK -1540 786 63 5 1079 261 173 46 69 chr11 64804384 64804471 -57039385 - RMER3D-int LTR ERVK -1731 1111 1027 5 1079 267 149 38 63 chr11 64804672 64804751 -57039105 - RMER3D-int LTR ERVK -1731 1111 1035 5 1079 590 204 19 0 chr11 64806196 64806299 -57037557 - PB1D9 SINE Alu -14 106 2 5 1079 1144 230 94 22 chr11 64807303 64807579 -57036277 - ORR1D2 LTR MaLR 0 370 75 5 1079 1930 122 17 75 chr11 64808912 64809220 -57034636 - ORR1A3 LTR MaLR 0 326 38 5 1079 6442 65 5 0 chr11 64809220 64810021 -57033835 - L1Md_T LINE L1 0 6582 5778 5 1079 1930 122 17 75 chr11 64810021 64810058 -57033798 - ORR1A3 LTR MaLR -289 37 1 5 1079 311 201 218 2 chr11 64810178 64810268 -57033588 - PB1D9 SINE Alu -3 146 26 5 1079 275 290 22 38 chr11 64819943 64820126 -57023730 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1079 1284 214 75 23 chr11 64820177 64820529 -57023327 + MTC LTR MaLR 2 399 -8 5 1079 308 301 6 40 chr11 64820534 64820707 -57023149 + (TATG)n Simple_repeat Simple_repeat 4 170 0 5 1079 323 329 23 29 chr11 64822374 64822549 -57021307 - L1MA5 LINE L1 -72 6228 6055 5 1079 250 244 138 23 chr11 64826136 64826266 -57017590 + MIR3 SINE MIR 51 195 -13 5 1079 1900 169 52 34 chr11 64828299 64828685 -57015171 - RMER10B LTR ERVL -4 394 2 5 1079 226 250 0 0 chr11 64828790 64828834 -57015022 - B1F2 SINE Alu -104 45 2 5 1079 1705 180 63 6 chr11 64829303 64829638 -57014218 + RLTR15 LTR ERVK 6 359 0 5 1079 348 327 117 70 chr11 64830029 64830107 -57013749 + B4A SINE B4 5 224 -64 5 1079 673 235 53 0 chr11 64830107 64830239 -57013617 + B1_Mur1 SINE Alu 6 144 -5 5 1079 2286 101 3 66 chr11 64830389 64830738 -57013118 + ORR1A2 LTR MaLR 1 327 0 5 1079 426 284 142 37 chr11 64831545 64831735 -57012121 - B3 SINE B2 -6 210 1 5 1079 269 346 145 45 chr11 64831811 64832032 -57011824 - MLT1G1 LTR MaLR -186 393 151 5 1079 258 355 166 20 chr11 64832116 64832363 -57011493 - MLT1D LTR MaLR 0 505 223 5 1079 695 267 12 6 chr11 64833314 64833476 -57010380 - RSINE1 SINE B4 0 165 3 5 1079 180 0 0 0 chr11 64833987 64834007 -57009849 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1079 290 284 80 72 chr11 64834382 64834507 -57009349 + Tigger13a DNA MER2_type 164 289 -482 5 1079 757 305 14 5 chr11 64834882 64835103 -57008753 + ID_B1 SINE B4 2 224 0 5 1079 261 326 62 42 chr11 64835978 64836122 -57007734 + MARNA DNA Mariner 83 229 -357 5 1079 1268 166 60 82 chr11 64837138 64837614 -57006242 + RLTR20C LTR ERVK 1 578 0 5 1079 595 309 78 27 chr11 64838153 64838667 -57005189 + L1MB7 LINE L1 5620 6184 0 5 1079 464 268 93 35 chr11 64839082 64839341 -57004515 - L1MB3 LINE L1 -12 6171 5898 5 1079 812 272 37 0 chr11 64839362 64839579 -57004277 - L1MB3 LINE L1 -384 5799 5575 5 1079 215 190 7 13 chr11 64842043 64842099 -57001757 - L2a LINE L2 -222 3165 3111 5 1079 670 252 247 4 chr11 64842469 64842724 -57001132 - Lx8 LINE L1 -318 7155 6839 5 1079 331 349 71 38 chr11 64843421 64843659 -57000197 + MIR SINE MIR 5 250 -12 5 1079 302 104 0 0 chr11 64844650 64844698 -56999158 + Lx9 LINE L1 7584 7631 -13 5 1079 341 233 258 33 chr11 64844955 64845075 -56998781 + MER2 DNA MER2_type 135 281 -64 5 1079 1303 139 37 9 chr11 64846083 64846301 -56997555 - URR1B DNA MER1_type -1 224 1 5 1079 732 305 93 62 chr11 64846945 64847123 -56996733 + MER44A DNA MER2_type 1 183 -156 5 1079 1392 209 128 9 chr11 64847123 64847451 -56996405 + ORR1D2 LTR MaLR 1 367 -3 5 1079 732 305 93 62 chr11 64847451 64847594 -56996262 + MER44A DNA MER2_type 184 332 -7 5 1079 920 204 6 6 chr11 64848042 64848215 -56995641 + ORR1D1 LTR MaLR 1 173 -201 5 1079 2868 137 119 51 chr11 64848218 64848766 -56995090 + RMER4B LTR ERVK 1 585 0 5 1079 611 224 149 0 chr11 64848766 64848940 -56994916 + ORR1D1 LTR MaLR 173 372 -2 5 1079 239 286 16 0 chr11 64849467 64849530 -56994326 + B1F SINE Alu 85 148 -1 5 1079 627 98 0 0 chr11 64849548 64849640 -56994216 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 5 1079 621 336 27 42 chr11 64849833 64850094 -56993762 - B4A SINE B4 -8 284 28 5 1079 382 167 302 38 chr11 64850425 64850531 -56993325 - B1_Mur1 SINE Alu -13 136 3 5 1079 261 276 6 12 chr11 64851636 64851805 -56992051 + GA-rich Low_complexity Low_complexity 3 170 0 5 1079 1077 263 62 20 chr11 64853521 64853874 -56989982 + ORR1D2 LTR MaLR 3 370 0 5 1079 342 0 0 0 chr11 64853932 64853970 -56989886 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1079 291 338 72 34 chr11 64854474 64854682 -56989174 - MER20 DNA MER1_type -3 216 1 5 1079 186 43 0 0 chr11 64854793 64854816 -56989040 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 5 1079 469 250 9 18 chr11 64856017 64856127 -56987729 + MTEa LTR MaLR 262 370 -9 5 1079 1440 79 5 0 chr11 64856321 64856510 -56987346 + B2_Mm1a SINE B2 2 191 -2 5 1079 368 323 43 81 chr11 64857012 64857142 -56986714 - L1MCa LINE L1 -5842 666 541 5 1079 198 103 0 0 chr11 64857142 64857171 -56986685 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1079 368 323 43 81 chr11 64857171 64857185 -56986671 - L1MCa LINE L1 -5968 540 533 5 1079 1189 113 43 0 chr11 64857185 64857370 -56986486 - B2_Mm2 SINE B2 -2 193 1 5 1079 368 323 43 81 chr11 64857370 64857433 -56986423 - L1MCa LINE L1 -5976 532 466 5 1079 429 342 86 29 chr11 64857439 64857683 -56986173 + B4A SINE B4 35 292 0 5 1079 21 0 0 0 chr11 64857854 64857875 -56985981 + AT_rich Low_complexity Low_complexity 1 21 0 5 1079 294 261 67 0 chr11 64858023 64858142 -56985714 + L1MC1 LINE L1 1249 1375 -5133 5 1079 5215 138 24 8 chr11 64858162 64859287 -56984569 - Lx5 LINE L1 -588 6462 5303 5 1079 2425 213 54 58 chr11 64859260 64859704 -56984152 + Lx5 LINE L1 6444 6896 -154 5 1079 360 0 0 0 chr11 64859704 64859744 -56984112 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1079 2425 213 54 58 chr11 64859744 64859907 -56983949 + Lx5 LINE L1 6897 7049 -1 5 1079 499 283 34 38 chr11 64860046 64860292 -56983564 + L1MC1 LINE L1 1569 1781 -4727 5 1079 1119 267 87 65 chr11 64860318 64860597 -56983259 + MTEa LTR MaLR 1 292 -87 5 1079 2222 137 0 3 chr11 64860597 64860927 -56982929 + ORR1A4 LTR MaLR 1 329 0 5 1079 1119 267 87 65 chr11 64860927 64861016 -56982840 + MTEa LTR MaLR 293 377 -2 5 1079 257 259 82 0 chr11 64861016 64861101 -56982755 + L1MC1 LINE L1 1806 1897 -4611 5 1079 490 271 24 16 chr11 64861144 64861268 -56982588 + RSINE1 SINE B4 41 165 0 5 1079 688 265 123 26 chr11 64861295 64861644 -56982212 + L1MC1 LINE L1 2026 2408 -4100 5 1079 798 225 79 11 chr11 64861669 64861858 -56981998 - B3 SINE B2 0 216 15 5 1079 227 167 0 0 chr11 64861879 64861927 -56981929 + L1MC1 LINE L1 2411 2458 -3863 5 1079 298 346 48 9 chr11 64861929 64862034 -56981822 + PB1D7 SINE Alu 1 109 -11 5 1079 633 289 113 14 chr11 64862048 64862570 -56981286 + L1MC1 LINE L1 2446 3051 -3270 5 1079 451 299 30 39 chr11 64863347 64863580 -56980276 + L1MC1 LINE L1 5491 5721 -798 5 1079 396 336 46 18 chr11 64863616 64863898 -56979958 + L1MC1 LINE L1 5876 6165 -343 5 1079 387 316 96 48 chr11 64864510 64864676 -56979180 - B4A SINE B4 -111 181 8 5 1079 2231 189 62 13 chr11 64864703 64865170 -56978686 + Lx9 LINE L1 7152 7641 -3 5 1079 32 57 0 0 chr11 64865173 64865226 -56978630 + AT_rich Low_complexity Low_complexity 1 53 0 5 1079 290 229 16 0 chr11 64865735 64865796 -56978060 + ID4 SINE ID 3 64 -19 5 1079 407 259 18 18 chr11 64867063 64867177 -56976679 - L1MA7 LINE L1 -6 6285 6172 5 1079 558 79 0 0 chr11 64869849 64869925 -56973931 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1079 185 347 105 85 chr11 64870184 64870584 -56973272 + L2b LINE L2 2947 3354 -21 5 1079 305 24 107 12 chr11 64870706 64870790 -56973066 + (GGGA)n Simple_repeat Simple_repeat 3 94 0 5 1079 365 0 22 0 chr11 64871157 64871202 -56972654 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1079 194 0 0 37 chr11 64871512 64871539 -56972317 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 5 1079 232 336 47 34 chr11 64872623 64872771 -56971085 - MER3 DNA MER1_type -41 168 19 5 1079 248 302 61 0 chr11 64874159 64874271 -56969585 - ID4_ SINE ID -33 119 2 5 1079 210 71 0 0 chr11 64874432 64874460 -56969396 + (TATG)n Simple_repeat Simple_repeat 2 29 0 5 1079 314 258 238 16 chr11 64874840 64874966 -56968890 - HAL1 LINE L1 -126 2381 2228 5 1079 29 0 0 0 chr11 64875040 64875069 -56968787 + AT_rich Low_complexity Low_complexity 1 29 0 5 1079 837 246 91 10 chr11 64875069 64875266 -56968590 - B3 SINE B2 -3 213 1 5 1079 23 0 0 0 chr11 64875304 64875327 -56968529 + AT_rich Low_complexity Low_complexity 1 23 0 5 1079 361 305 113 30 chr11 64876008 64876309 -56967547 - HAL1 LINE L1 -1146 1361 1036 5 1079 218 382 11 0 chr11 64877106 64877195 -56966661 - BC1_Mm scRNA scRNA -54 98 9 5 1079 812 246 81 75 chr11 64877514 64877861 -56965995 - ORR1E LTR MaLR -9 350 2 5 1079 632 229 53 8 chr11 64878033 64878165 -56965691 - B1F SINE Alu -9 140 3 5 1079 347 227 0 0 chr11 64878107 64878173 -56965683 - B4A SINE B4 -147 145 80 5 1079 996 305 101 27 chr11 64878401 64878839 -56965017 + MER34A1 LTR ERV1 2 471 -116 5 1079 2535 165 36 33 chr11 64879972 64880493 -56963363 - RLTR28 LTR ERVL -1 523 1 5 1080 241 274 47 79 chr11 64881345 64881472 -56962384 + L1M3 LINE L1 5630 5752 -428 5 1080 414 292 87 80 chr11 64881655 64881930 -56961926 + ORR1E LTR MaLR 30 306 -53 6 1080 206 346 51 61 chr11 64882996 64883193 -56960663 - MIRb SINE MIR -40 228 34 6 1080 367 290 112 44 chr11 64883292 64883658 -56960198 - L2a LINE L2 -17 3409 2971 6 1080 798 297 110 26 chr11 64884993 64885412 -56958444 + MER74A LTR ERVL 85 538 -20 6 1080 498 284 25 11 chr11 64885575 64885726 -56958130 - ID_B1 SINE B4 -54 238 84 6 1080 1385 226 135 0 chr11 64886558 64886885 -56956971 - MTE2b LTR MaLR -3 376 6 6 1080 729 279 21 132 chr11 64886923 64887158 -56956698 + B4 SINE B4 11 219 -73 6 1080 192 152 0 0 chr11 64887158 64887191 -56956665 + GA-rich Low_complexity Low_complexity 1 33 0 6 1080 258 192 0 0 chr11 64887279 64887331 -56956525 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1080 565 338 65 19 chr11 64888282 64888496 -56955360 - MER2 DNA MER2_type -95 250 27 6 1080 231 178 0 43 chr11 64888743 64888790 -56955066 + (CATA)n Simple_repeat Simple_repeat 2 46 0 6 1080 391 225 18 12 chr11 64888794 64888965 -56954891 + (TA)n Simple_repeat Simple_repeat 2 173 0 6 1080 14404 66 20 18 chr11 64889108 64891976 -56951880 + L1VL2 LINE L1 116 2988 -627 6 1080 26 30 0 0 chr11 64892548 64892581 -56951275 + AT_rich Low_complexity Low_complexity 1 33 0 6 1080 648 211 49 7 chr11 64892963 64893106 -56950750 + B1_Mur1 SINE Alu 1 149 0 6 1080 1289 235 115 0 chr11 64893293 64893616 -56950240 + ORR1D2 LTR MaLR 1 360 -10 6 1080 484 322 131 13 chr11 64893629 64894403 -56949453 + L1MD2 LINE L1 4456 5320 -826 6 1080 264 263 53 0 chr11 64894404 64894480 -56949376 + ID4 SINE ID 4 83 0 6 1080 236 306 14 0 chr11 64894516 64894588 -56949268 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 1080 346 130 0 0 chr11 64894588 64894642 -56949214 + HAL1-3A_ME LINE L1 1976 2029 -829 6 1080 347 345 93 32 chr11 64894924 64895170 -56948686 + L1MD2 LINE L1 5724 5984 -375 6 1080 677 123 18 28 chr11 64895212 64895321 -56948535 - B1_Mur1 SINE Alu 0 149 42 6 1080 456 19 0 0 chr11 64895926 64895979 -56947877 + (GA)n Simple_repeat Simple_repeat 1 53 0 6 1080 1013 151 52 0 chr11 64896324 64896496 -56947360 + B2_Mm2 SINE B2 1 181 -14 6 1080 572 280 76 0 chr11 64896725 64896857 -56946999 + ID_B1 SINE B4 8 149 -75 6 1080 29 0 0 0 chr11 64896905 64896934 -56946922 + AT_rich Low_complexity Low_complexity 1 29 0 6 1080 369 302 158 71 chr11 64896994 64897381 -56946475 + L1M4 LINE L1 3113 3550 -2596 6 1080 306 0 0 0 chr11 64897383 64897417 -56946439 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1080 735 267 123 31 chr11 64897525 64897753 -56946103 - ORR1E LTR MaLR -108 251 3 6 1080 1486 312 68 73 chr11 64898649 64898903 -56944953 + Lx8 LINE L1 6025 6318 -1155 6 1080 1291 230 74 19 chr11 64898903 64899267 -56944589 + ORR1C2 LTR MaLR 1 384 0 6 1080 1486 242 42 84 chr11 64899267 64899325 -56944531 + Lx8 LINE L1 6319 6370 -1103 6 1080 2064 162 97 3 chr11 64899325 64899685 -56944171 + ORR1B1 LTR MaLR 1 394 0 6 1080 1486 242 42 84 chr11 64899685 64899953 -56943903 + Lx8 LINE L1 6371 6627 -846 6 1080 497 240 0 0 chr11 64899954 64900054 -56943802 + MT2A LTR ERVL 2 101 -432 6 1080 871 321 96 18 chr11 64900070 64900466 -56943390 + Lx8 LINE L1 7043 7469 -4 6 1080 290 246 0 14 chr11 64900580 64900654 -56943202 + B3A SINE B2 1 73 -125 6 1080 293 240 20 25 chr11 64900589 64900671 -56943185 + B4A SINE B4 10 89 -203 6 1080 1158 247 105 62 chr11 64901175 64901744 -56942112 + L1_Mur3 LINE L1 1203 1796 -4084 6 1080 886 204 87 42 chr11 64901744 64902031 -56941825 + L1_Mur3 LINE L1 2548 2847 -3033 6 1080 592 212 14 35 chr11 64902037 64902179 -56941677 - L1_Mur3 LINE L1 -2066 3814 3676 6 1080 409 287 13 18 chr11 64904040 64904171 -56939685 - PB1D10 SINE Alu -15 134 1 6 1080 206 250 33 16 chr11 64904293 64904354 -56939502 + GA-rich Low_complexity Low_complexity 3 64 0 6 1080 333 0 0 0 chr11 64904511 64904548 -56939308 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1080 210 333 0 0 chr11 64904561 64904639 -56939217 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1080 908 243 9 37 chr11 64904811 64904876 -56938980 + B3 SINE B2 5 62 -154 6 1080 2156 159 57 15 chr11 64904876 64905278 -56938578 + MTC LTR MaLR 3 421 0 6 1080 908 243 9 37 chr11 64905278 64905430 -56938426 + B3 SINE B2 63 216 0 6 1080 236 317 9 19 chr11 64906261 64906367 -56937489 + (TATG)n Simple_repeat Simple_repeat 3 107 0 6 1080 840 273 46 42 chr11 64906372 64906655 -56937201 - B4A SINE B4 -7 285 2 6 1080 439 301 121 0 chr11 64906803 64906976 -56936880 + MLT1B LTR MaLR 21 214 -176 6 1080 441 36 0 0 chr11 64907789 64907844 -56936012 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1080 352 317 160 43 chr11 64908268 64908568 -56935288 + MER34A LTR ERV1 7 341 -230 6 1080 291 28 0 0 chr11 64908568 64908604 -56935252 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1080 640 212 17 0 chr11 64908649 64908767 -56935089 - B1_Mm SINE Alu -23 124 5 6 1080 413 258 45 0 chr11 64908826 64908915 -56934941 + B1F SINE Alu 1 93 -56 6 1080 714 237 60 84 chr11 64909394 64909693 -56934163 - B4A SINE B4 0 292 1 6 1080 301 258 30 0 chr11 64909701 64909767 -56934089 - B4A SINE B4 -72 220 153 6 1080 285 332 141 70 chr11 64910310 64910566 -56933290 + MLT1B LTR MaLR 248 521 -58 6 1080 1038 290 73 65 chr11 64911655 64911765 -56932091 + MLT1D LTR MaLR 1 116 -389 6 1080 1442 78 11 0 chr11 64911765 64911956 -56931900 + B2_Mm1t SINE B2 1 193 0 6 1080 1038 290 73 65 chr11 64911956 64912339 -56931517 + MLT1D LTR MaLR 117 498 -7 6 1080 255 325 116 52 chr11 64912368 64912540 -56931316 - ORR1E LTR MaLR -110 249 67 6 1080 402 306 40 61 chr11 64913060 64913258 -56930598 + MER74A LTR ERVL 3 196 -362 6 1080 2226 85 3 0 chr11 64913294 64913599 -56930257 + ORR1A2 LTR MaLR 22 327 0 6 1080 572 298 73 21 chr11 64914277 64914510 -56929346 - MLT1B LTR MaLR -140 250 6 6 1080 585 300 66 5 chr11 64915692 64915902 -56927954 - MER2 DNA MER2_type -14 331 109 6 1080 287 304 0 14 chr11 64915902 64915972 -56927884 + ID4_ SINE ID 2 70 -13 6 1080 304 315 87 40 chr11 64915957 64916106 -56927750 - MER2 DNA MER2_type -189 156 1 6 1080 1291 274 129 17 chr11 64916865 64917285 -56926571 + RCHARR1 DNA MER1_type 3 469 -505 6 1080 794 258 26 22 chr11 64917282 64917508 -56926348 + RCHARR1 DNA MER1_type 748 974 0 6 1080 205 143 48 0 chr11 64919515 64919557 -56924299 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1080 632 295 45 14 chr11 64919786 64920006 -56923850 - RMER15 LTR ERVL -4 571 345 6 1080 344 292 22 11 chr11 64920471 64920561 -56923295 + PB1D7 SINE Alu 18 108 -12 6 1080 1167 110 71 0 chr11 64922659 64922841 -56921015 + B2_Mm2 SINE B2 1 195 0 6 1080 1567 161 146 78 chr11 64923075 64923446 -56920410 + MTC LTR MaLR 25 420 -1 6 1080 562 224 46 39 chr11 64923968 64924121 -56919735 - RSINE1 SINE B4 -5 160 7 6 1080 441 139 81 11 chr11 64924128 64924215 -56919641 - PB1D10 SINE Alu -1 116 24 6 1080 256 357 90 39 chr11 64924998 64925176 -56918680 - Tigger9a DNA Tigger -4 728 542 6 1080 723 12 0 0 chr11 64926148 64926232 -56917624 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 1080 273 196 0 0 chr11 64926757 64926813 -56917043 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1080 549 326 59 0 chr11 64926896 64927083 -56916773 + B3A SINE B2 1 198 0 6 1080 194 319 21 62 chr11 64927211 64927308 -56916548 - L2c LINE L2 -27 3360 3268 6 1080 1823 94 170 0 chr11 64927828 64928104 -56915752 - ORR1A2 LTR MaLR -4 323 1 6 1080 378 312 122 29 chr11 64928397 64928709 -56915147 + ORR1E LTR MaLR 1 333 -51 6 1080 1178 280 103 21 chr11 64928819 64929188 -56914668 - MTD LTR MaLR -14 405 6 6 1080 580 244 16 22 chr11 64929646 64929791 -56914065 + B1F2 SINE Alu 7 146 -3 6 1080 488 196 86 78 chr11 64930015 64930131 -56913725 + B3A SINE B2 27 143 -55 6 1080 1280 173 0 74 chr11 64930511 64930754 -56913102 - URR1B DNA MER1_type 0 225 1 6 1080 201 296 0 0 chr11 64931079 64931160 -56912696 + A-rich Low_complexity Low_complexity 1 81 0 6 1080 760 301 88 12 chr11 64931570 64931910 -56911946 - Lx8 LINE L1 -146 7327 6962 6 1080 242 316 31 10 chr11 64932539 64932731 -56911125 + L1M2 LINE L1 1634 1829 -5020 6 1080 1547 212 49 46 chr11 64932756 64933122 -56910734 + MTD LTR MaLR 1 367 -52 6 1080 1079 109 0 0 chr11 64933407 64933554 -56910302 + B1_Mus2 SINE Alu 1 147 0 6 1080 988 141 11 0 chr11 64934068 64934245 -56909611 + CT-rich Low_complexity Low_complexity 2 180 0 6 1080 4582 153 64 72 chr11 64934423 64935316 -56908540 + RMER19B LTR ERVK 1 886 -16 6 1080 1418 71 11 0 chr11 64935317 64935500 -56908356 + B2_Mm1a SINE B2 1 185 -8 6 1080 955 278 84 18 chr11 64937625 64937911 -56905945 + Tigger7 DNA MER2_type 1 305 -2186 6 1080 542 236 156 36 chr11 64939384 64939608 -56904248 + Tigger7 DNA MER2_type 2155 2405 -86 6 1080 572 273 158 60 chr11 64940496 64941002 -56902854 + MER67B LTR ERV1 15 554 -107 6 1080 272 247 25 49 chr11 64941122 64941203 -56902653 - ID4 SINE ID -2 81 3 6 1080 241 286 119 0 chr11 64941242 64941326 -56902530 + MIRb SINE MIR 19 112 -156 6 1080 259 344 9 94 chr11 64941432 64941538 -56902318 - PB1D10 SINE Alu -11 106 10 6 1080 205 191 21 0 chr11 64941813 64941860 -56901996 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1080 529 267 43 22 chr11 64941895 64941994 -56901862 - ID_B1 SINE B4 -3 221 119 6 1080 234 0 0 0 chr11 64941994 64942020 -56901836 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1080 529 267 43 22 chr11 64942020 64942058 -56901798 - ID_B1 SINE B4 -106 118 81 6 1080 235 367 20 10 chr11 64942258 64942357 -56901499 - MIR3 SINE MIR -21 187 88 6 1080 408 111 0 0 chr11 64943194 64943257 -56900599 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1080 948 293 131 38 chr11 64943424 64944032 -56899824 - L1MA8 LINE L1 -353 5938 5276 6 1080 638 308 77 14 chr11 64944342 64944704 -56899152 - L1MA8 LINE L1 -1366 4777 4393 6 1080 233 358 58 14 chr11 64944872 64945011 -56898845 - L2a LINE L2 -1 3425 3281 6 1080 1019 62 15 0 chr11 64945559 64945689 -56898167 + B1_Mm SINE Alu 1 132 -15 6 1080 22 0 0 0 chr11 64946630 64946652 -56897204 + AT_rich Low_complexity Low_complexity 1 22 0 6 1080 588 251 93 29 chr11 64947884 64948130 -56895726 + Tigger7 DNA MER2_type 2226 2487 -4 7 1080 641 261 74 11 chr11 64948148 64948338 -56895518 + ID_B1 SINE B4 2 203 -21 7 1080 624 172 0 0 chr11 64948339 64948455 -56895401 + GA-rich Low_complexity Low_complexity 2 117 0 7 1080 1032 254 119 18 chr11 64949670 64950007 -56893849 + MTE2a LTR MaLR 1 371 -8 7 1080 636 306 194 20 chr11 64950024 64950423 -56893433 - MLT2B3 LTR ERVL -85 469 1 7 1080 624 273 39 5 chr11 64950613 64950819 -56893037 + L1M2 LINE L1 5503 5715 -582 7 1080 319 251 169 57 chr11 64951393 64951570 -56892286 + MER58B DNA MER1_type 123 319 -22 7 1080 1100 223 107 53 chr11 64951579 64951953 -56891903 - MTD LTR MaLR -8 411 18 7 1080 276 186 0 0 chr11 64952190 64952249 -56891607 + GA-rich Low_complexity Low_complexity 4 62 0 7 1080 1364 311 132 12 chr11 64953811 64954964 -56888892 - L1M5 LINE L1 -2191 3955 2689 7 1080 232 219 0 0 chr11 64956030 64956071 -56887785 + polypurine Low_complexity Low_complexity 3 43 0 7 1080 1383 238 62 21 chr11 64957937 64958310 -56885546 + MTD LTR MaLR 18 405 -14 7 1080 242 118 0 38 chr11 64958654 64958707 -56885149 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1080 358 325 136 45 chr11 64959488 64959730 -56884126 + LTR16A LTR ERVL 188 451 0 7 1080 3036 122 22 52 chr11 64959940 64960535 -56883321 - RMER4B LTR ERVK -8 577 1 7 1080 294 247 14 0 chr11 64960628 64960701 -56883155 + B1F2 SINE Alu 40 113 -36 7 1080 479 227 27 9 chr11 64960712 64960868 -56882988 + B3 SINE B2 33 192 -6 7 1080 493 248 41 16 chr11 64961461 64961584 -56882272 - B1F1 SINE Alu -21 129 4 7 1080 410 0 20 0 chr11 64961610 64961660 -56882196 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1080 282 282 0 23 chr11 64961916 64962003 -56881853 - B4 SINE B4 -207 85 1 7 1080 1474 209 109 18 chr11 64963258 64963642 -56880214 - MTD LTR MaLR 0 419 1 7 1080 337 322 9 9 chr11 64963871 64963987 -56879869 + PB1D10 SINE Alu 2 117 0 7 1080 195 100 0 0 chr11 64964470 64964500 -56879356 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 7 1080 393 136 0 0 chr11 64964503 64964569 -56879287 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1080 496 283 50 7 chr11 64964951 64965090 -56878766 + RSINE1 SINE B4 4 148 -17 7 1080 186 43 0 0 chr11 64966116 64966139 -56877717 + (TC)n Simple_repeat Simple_repeat 2 24 0 7 1080 444 277 37 37 chr11 64966604 64966739 -56877117 + MLT1I LTR MaLR 86 220 -191 7 1080 264 333 10 0 chr11 64967046 64967145 -56876711 - MIR SINE MIR -2 260 161 7 1080 803 203 65 0 chr11 64968449 64968602 -56875254 + RSINE1 SINE B4 3 165 0 7 1080 276 151 0 19 chr11 64971366 64971420 -56872436 + B1_Mur4 SINE Alu 98 150 0 7 1080 443 242 311 0 chr11 64973068 64973200 -56870656 - ID_B1 SINE B4 -16 208 36 7 1080 229 303 0 0 chr11 64973605 64973681 -56870175 - L2b LINE L2 -11 3364 3289 7 1080 270 0 0 0 chr11 64974248 64974278 -56869578 + (TAA)n Simple_repeat Simple_repeat 2 31 0 7 1080 232 291 165 0 chr11 64977092 64977171 -56866685 + RSINE1 SINE B4 2 93 -72 7 1080 21 36 0 0 chr11 64977206 64977234 -56866622 + AT_rich Low_complexity Low_complexity 1 28 0 7 1080 344 41 41 0 chr11 64977891 64977940 -56865916 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7 1080 7816 81 57 8 chr11 64977940 64979050 -56864806 - Lx3A LINE L1 -13 6968 5805 7 1080 1429 255 63 0 chr11 64979069 64979418 -56864438 + MTE2b LTR MaLR 5 375 -4 7 1080 237 243 14 14 chr11 64980595 64980666 -56863190 + MLT1I LTR MaLR 58 128 -283 7 1080 619 272 32 16 chr11 64980843 64981030 -56862826 + ORR1E LTR MaLR 9 198 -161 7 1080 198 150 0 0 chr11 64981065 64981105 -56862751 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1080 1127 264 89 29 chr11 64981411 64981984 -56861872 - L1_Rod LINE L1 -524 5776 5076 7 1080 394 250 0 0 chr11 64981986 64982066 -56861790 - B3A SINE B2 -118 80 1 7 1080 717 235 0 20 chr11 64982125 64982277 -56861579 - B1_Mur1 SINE Alu 0 149 1 7 1080 501 84 0 0 chr11 64984808 64984879 -56858977 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 1080 2592 153 89 4 chr11 64985724 64986081 -56857775 + RMER1B Other Other 558 925 -141 7 1080 248 0 0 30 chr11 64986081 64986114 -56857742 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1080 2592 153 89 4 chr11 64986114 64986216 -56857640 + RMER1B Other Other 926 1055 -11 7 1080 476 295 2 8 chr11 64986881 64987061 -56856795 + MIRb SINE MIR 35 207 -55 7 1080 26 64 0 0 chr11 64987114 64987161 -56856695 + AT_rich Low_complexity Low_complexity 1 47 0 7 1080 312 228 22 17 chr11 64988451 64988630 -56855226 + CT-rich Low_complexity Low_complexity 1 180 0 7 1080 198 150 0 0 chr11 64990565 64990605 -56853251 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 7 1080 285 29 0 0 chr11 64990785 64990819 -56853037 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1080 186 128 0 0 chr11 64991597 64991636 -56852220 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1080 191 368 95 12 chr11 64993471 64993713 -56850143 + L2 LINE L2 1350 1611 -1808 7 1080 432 273 88 29 chr11 64994614 64994818 -56849038 - L1MB3 LINE L1 -24 6147 5932 7 1080 398 233 43 36 chr11 64994799 64994937 -56848919 - L1MB3 LINE L1 -351 5829 5691 7 1080 566 348 44 16 chr11 64995483 64995734 -56848122 - MER2 DNA MER2_type -3 342 85 7 1080 285 361 78 23 chr11 64996470 64996688 -56847168 - Tigger5 DNA MER2_type -2166 240 11 7 1080 887 102 7 0 chr11 64997246 64997383 -56846473 + (TTTC)n Simple_repeat Simple_repeat 1 138 0 7 1080 841 197 0 26 chr11 64997390 64997541 -56846315 - B1_Mur2 SINE Alu -1 148 2 7 1080 1324 106 0 16 chr11 64999133 64999325 -56844531 - B2_Mm2 SINE B2 -6 189 1 7 1080 192 67 33 0 chr11 64999839 64999869 -56843987 + MIRm SINE MIR 234 264 -12 7 1080 253 232 36 0 chr11 64999944 65000000 -56843856 - B1F SINE Alu -57 92 35 7 1080 444 275 64 23 chr11 65001995 65002166 -56841690 - MER5A DNA MER1_type -6 183 6 1 1080 218 328 15 0 chr11 65002236 65002303 -56841553 - ID4 SINE ID -15 68 1 2 1080 201 289 109 11 chr11 65002515 65002627 -56841229 + MIR SINE MIR 110 229 -39 3 1080 22 0 0 0 chr11 65002890 65002912 -56840944 + AT_rich Low_complexity Low_complexity 1 22 0 4 1080 955 264 0 0 chr11 65003312 65003528 -56840328 + B3 SINE B2 1 216 0 5 1080 693 221 0 20 chr11 65004040 65004192 -56839664 - B1_Mur3 SINE Alu 0 149 1 6 1080 234 222 0 0 chr11 65005276 65005330 -56838526 + T-rich Low_complexity Low_complexity 1 54 0 7 1080 1189 74 0 0 chr11 65005330 65005478 -56838378 - B1_Mus1 SINE Alu 0 148 1 8 1080 1648 81 0 140 chr11 65005589 65005875 -56837981 + L1_Mus2 LINE L1 6321 6566 0 9 1080 429 54 0 0 chr11 65005894 65005950 -56837906 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1080 279 0 0 0 chr11 65005950 65005981 -56837875 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1080 641 239 146 38 chr11 65005988 65006227 -56837629 - B4 SINE B4 -26 266 2 1 1080 23 0 0 0 chr11 65006880 65006903 -56836953 + AT_rich Low_complexity Low_complexity 1 23 0 1 1080 281 248 142 0 chr11 65007174 65007287 -56836569 - L1MB4 LINE L1 -198 5982 5854 1 1080 342 0 0 0 chr11 65007361 65007399 -56836457 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1 1080 336 48 0 0 chr11 65008741 65008783 -56835073 + (CAATA)n Simple_repeat Simple_repeat 3 44 0 1 1080 513 47 0 0 chr11 65009640 65009704 -56834152 + (CTG)n Simple_repeat Simple_repeat 1 64 0 1 1080 228 383 0 0 chr11 65010605 65010665 -56833191 + RSINE1 SINE B4 93 152 -13 1 1080 441 0 0 0 chr11 65010675 65010724 -56833132 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1081 1436 293 62 79 chr11 65011902 65012721 -56831135 - L1MB5 LINE L1 -51 6123 5319 2 1081 1003 156 136 0 chr11 65012979 65013178 -56830678 + URR1A DNA MER1_type 1 226 0 2 1081 348 241 45 11 chr11 65013964 65014052 -56829804 - B1F1 SINE Alu -58 91 1 2 1081 330 326 6 33 chr11 65014853 65015034 -56828822 + (TATATG)n Simple_repeat Simple_repeat 1 176 0 2 1081 186 133 0 0 chr11 65015057 65015087 -56828769 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1081 462 286 0 43 chr11 65015125 65015311 -56828545 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 2 1081 438 20 0 0 chr11 65016272 65016323 -56827533 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1081 339 130 0 0 chr11 65016324 65016378 -56827478 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1081 310 225 90 0 chr11 65017569 65017658 -56826198 + PB1D10 SINE Alu 10 106 -11 2 1081 376 237 26 0 chr11 65019363 65019439 -56824417 + ID4_ SINE ID 2 79 -4 2 1081 244 279 0 68 chr11 65019585 65019658 -56824198 - ID4 SINE ID -14 69 2 3 1081 457 187 358 0 chr11 65019690 65019877 -56823979 + Lx9 LINE L1 7390 7643 -1 3 1081 221 0 0 33 chr11 65020710 65020740 -56823116 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1081 231 146 0 0 chr11 65020783 65020824 -56823032 + (GGA)n Simple_repeat Simple_repeat 2 42 0 3 1081 209 108 0 26 chr11 65020856 65020894 -56822962 + (AGGGGG)n Simple_repeat Simple_repeat 6 42 0 3 1081 575 310 43 20 chr11 65021372 65021625 -56822231 + MER2 DNA MER2_type 86 344 -1 3 1081 489 34 0 0 chr11 65022432 65022491 -56821365 + (CCA)n Simple_repeat Simple_repeat 2 60 0 3 1081 257 161 0 51 chr11 65022579 65022638 -56821218 + MIRb SINE MIR 122 177 -91 3 1081 450 49 0 0 chr11 65026415 65026476 -56817380 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1081 809 155 0 90 chr11 65026557 65026713 -56817143 + B1_Mus1 SINE Alu 6 147 -1 3 1081 1071 94 18 0 chr11 65026717 65026888 -56816968 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 4 1081 273 57 0 0 chr11 65027190 65027225 -56816631 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1081 1007 249 64 25 chr11 65027230 65027510 -56816346 - B4A SINE B4 0 292 2 4 1081 424 291 13 13 chr11 65028356 65028506 -56815350 + Tigger5 DNA MER2_type 28 177 -2229 4 1081 471 197 136 21 chr11 65028920 65029060 -56814796 + MER58A DNA MER1_type 53 208 -16 4 1081 32 75 0 0 chr11 65029791 65029858 -56813998 + AT_rich Low_complexity Low_complexity 1 67 0 4 1081 607 225 0 0 chr11 65031694 65031814 -56812042 - B1F SINE Alu -29 120 1 4 1081 311 108 20 61 chr11 65032827 65032926 -56810930 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 4 1081 956 92 33 0 chr11 65034804 65034956 -56808900 + URR1A DNA MER1_type 69 225 -1 4 1081 22 35 0 0 chr11 65035136 65035165 -56808691 + AT_rich Low_complexity Low_complexity 1 29 0 4 1081 474 129 0 0 chr11 65035212 65035297 -56808559 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1081 696 167 64 14 chr11 65035297 65035428 -56808428 - B1_Mus1 SINE Alu -9 139 2 5 1081 193 89 22 22 chr11 65036377 65036423 -56807433 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 1081 2121 100 6 23 chr11 65036615 65036962 -56806894 + RLTR15 LTR ERVK 1 341 -18 5 1081 248 316 163 15 chr11 65037794 65037929 -56805927 - MIR3 SINE MIR -23 185 31 5 1081 543 132 0 0 chr11 65038400 65038491 -56805365 + (TG)n Simple_repeat Simple_repeat 1 91 0 5 1081 490 308 7 33 chr11 65039451 65039602 -56804254 - RSINE1 SINE B4 -15 150 4 5 1081 345 275 112 59 chr11 65040711 65040881 -56802975 + MER5A DNA MER1_type 6 184 -5 5 1081 1181 173 5 24 chr11 65041176 65041389 -56802467 - B3 SINE B2 -4 212 4 5 1081 468 341 82 13 chr11 65042949 65043252 -56800604 + Lx8 LINE L1 7111 7434 -39 5 1081 216 0 0 0 chr11 65044147 65044171 -56799685 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1081 209 91 45 0 chr11 65044421 65044465 -56799391 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 6 1081 232 121 0 49 chr11 65045717 65045760 -56798096 + T-rich Low_complexity Low_complexity 20 61 0 6 1081 1267 27 0 0 chr11 65045760 65045908 -56797948 - B1_Mus1 SINE Alu 0 148 1 6 1081 232 121 0 49 chr11 65045908 65045925 -56797931 + T-rich Low_complexity Low_complexity 4 19 0 6 1081 396 0 0 0 chr11 65046213 65046257 -56797599 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1081 477 34 0 0 chr11 65046271 65046330 -56797526 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 1081 296 320 60 6 chr11 65047051 65047233 -56796623 + MIRb SINE MIR 72 263 -5 6 1081 236 213 65 16 chr11 65047564 65047626 -56796230 - MTEa LTR MaLR -14 365 301 6 1081 614 164 22 37 chr11 65047706 65048034 -56795822 + (CA)n Simple_repeat Simple_repeat 1 322 0 6 1081 520 327 29 70 chr11 65048418 65048763 -56795093 + L1MEf LINE L1 589 919 -5323 7 1081 253 220 0 0 chr11 65049615 65049665 -56794191 + RSINE1 SINE B4 87 136 -29 7 1081 433 281 167 24 chr11 65049922 65050210 -56793646 + L1MEf LINE L1 2653 2981 -3165 7 1081 723 213 23 37 chr11 65050226 65050451 -56793405 + ORR1C2 LTR MaLR 27 262 -108 7 1081 254 167 26 0 chr11 65050451 65050529 -56793327 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 7 1081 824 158 46 61 chr11 65050557 65050753 -56793103 + ORR1C2 LTR MaLR 192 384 0 7 1081 706 305 54 8 chr11 65050753 65051104 -56792752 + L1MEf LINE L1 3141 3507 -2639 7 1081 562 267 71 11 chr11 65051191 65051373 -56792483 + B3A SINE B2 1 193 -5 7 1081 1236 34 0 0 chr11 65052631 65052780 -56791076 + (GGGAGA)n Simple_repeat Simple_repeat 3 151 0 7 1081 612 101 0 0 chr11 65052970 65053059 -56790797 + (TCC)n Simple_repeat Simple_repeat 2 90 0 7 1081 288 130 0 0 chr11 65053564 65053610 -56790246 + (GGA)n Simple_repeat Simple_repeat 3 48 0 7 1081 960 279 140 12 chr11 65054138 65054559 -56789297 + L1MB2 LINE L1 5448 5922 -249 7 1081 432 0 0 0 chr11 65054604 65054652 -56789204 + (TTA)n Simple_repeat Simple_repeat 2 49 0 7 1081 542 247 26 46 chr11 65054798 65054951 -56788905 + B3A SINE B2 2 151 -47 8 1081 513 0 0 0 chr11 65054958 65055015 -56788841 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1081 270 0 0 0 chr11 65055015 65055044 -56788812 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1081 1754 157 100 0 chr11 65055085 65055385 -56788471 + Lx4A LINE L1 6729 7058 0 8 1081 350 227 69 40 chr11 65055407 65055508 -56788348 + MLT1A LTR MaLR 271 374 0 8 1081 423 0 0 0 chr11 65055891 65055938 -56787918 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 8 1081 1176 86 8 14 chr11 65056341 65056696 -56787160 + (TTTC)n Simple_repeat Simple_repeat 1 352 0 8 1081 911 148 28 25 chr11 65056718 65057035 -56786821 + CT-rich Low_complexity Low_complexity 1 317 0 8 1081 182 191 0 21 chr11 65057631 65057679 -56786177 + (ATG)n Simple_repeat Simple_repeat 1 47 0 8 1081 1369 103 5 0 chr11 65058035 65058219 -56785637 - B2_Mm1a SINE B2 -7 186 2 8 1081 319 241 61 33 chr11 65058952 65059050 -56784806 + PB1D10 SINE Alu 12 109 -8 9 1081 469 196 260 79 chr11 65059684 65059861 -56783995 - B3 SINE B2 -7 209 1 9 1081 276 254 16 0 chr11 65060869 65060932 -56782924 + ID4_ SINE ID 8 71 -12 9 1081 432 296 98 38 chr11 65061581 65061764 -56782092 + B3A SINE B2 2 195 -3 9 1081 229 307 0 13 chr11 65061846 65061922 -56781934 + (TG)n Simple_repeat Simple_repeat 2 76 0 9 1081 698 299 80 29 chr11 65061924 65062200 -56781656 - B4A SINE B4 0 292 3 9 1081 221 333 0 17 chr11 65063049 65063107 -56780749 - PB1 SINE Alu -70 57 1 9 1081 298 252 120 17 chr11 65064677 65064794 -56779062 - B1F1 SINE Alu -9 140 12 9 1081 235 274 0 0 chr11 65065069 65065120 -56778736 + GA-rich Low_complexity Low_complexity 2 52 0 9 1081 285 98 0 0 chr11 65065135 65065176 -56778680 + (TAA)n Simple_repeat Simple_repeat 2 42 0 9 1081 606 280 26 26 chr11 65066038 65066232 -56777624 - B3A SINE B2 0 198 5 1 1081 487 310 25 19 chr11 65066312 65066470 -56777386 + MER45A DNA Tip100 1 159 -19 1 1081 492 18 0 0 chr11 65066901 65066958 -56776898 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1081 348 294 176 14 chr11 65066973 65067121 -56776735 - B3A SINE B2 -25 173 2 1 1081 309 51 0 0 chr11 65067121 65067160 -56776696 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1 1081 459 0 0 0 chr11 65067245 65067296 -56776560 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1081 338 277 19 19 chr11 65067806 65067909 -56775947 - PB1D10 SINE Alu -8 109 7 1 1081 243 0 0 0 chr11 65069644 65069671 -56774185 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1081 228 366 18 9 chr11 65070003 65070116 -56773740 + MIRc SINE MIR 19 132 -136 1 1081 228 224 59 15 chr11 65070785 65070853 -56773003 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1 1081 183 114 0 0 chr11 65071727 65071762 -56772094 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1081 415 276 148 34 chr11 65072328 65072591 -56771265 - MER44A DNA MER2_type -40 299 7 1 1081 26 64 0 0 chr11 65073105 65073152 -56770704 + AT_rich Low_complexity Low_complexity 1 47 0 1 1081 995 189 34 29 chr11 65073361 65073568 -56770288 + B3 SINE B2 2 209 -7 1 1081 315 262 155 0 chr11 65073756 65073859 -56769997 - PB1D7 SINE Alu -1 119 1 1 1081 409 177 23 124 chr11 65073898 65074027 -56769829 + B1_Mm SINE Alu 32 147 0 1 1081 586 160 14 7 chr11 65074591 65074736 -56769120 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 1 1081 467 202 0 8 chr11 65075060 65075185 -56768671 + (TG)n Simple_repeat Simple_repeat 2 125 0 1 1081 181 264 38 0 chr11 65075259 65075312 -56768544 + MIRc SINE MIR 100 154 -114 1 1081 210 87 65 0 chr11 65076041 65076087 -56767769 + T-rich Low_complexity Low_complexity 2 50 0 1 1081 226 251 46 18 chr11 65077139 65077243 -56766613 - MIR SINE MIR -64 144 33 1 1081 253 306 14 0 chr11 65077626 65077698 -56766158 - ID4_ SINE ID -10 73 1 1 1081 439 213 139 0 chr11 65078541 65078663 -56765193 + B1F SINE Alu 3 141 -8 1 1081 216 0 0 0 chr11 65078739 65078763 -56765093 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1081 1081 35 0 0 chr11 65078767 65078908 -56764948 - B1_Mus2 SINE Alu 0 147 7 1 1081 654 145 18 68 chr11 65078908 65078926 -56764930 - ID_B1 SINE B4 0 220 70 1 1081 329 282 0 0 chr11 65079822 65079907 -56763949 - MER53 DNA hAT -108 85 1 1 1081 459 0 0 0 chr11 65079999 65080050 -56763806 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 1 1081 273 57 0 0 chr11 65081076 65081111 -56762745 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 1 1081 1060 86 50 0 chr11 65081477 65081617 -56762239 + B1_Mus1 SINE Alu 2 148 0 1 1081 933 288 0 39 chr11 65084757 65085076 -56758780 - MLT1D LTR MaLR -12 493 206 1 1081 450 0 0 0 chr11 65085688 65085738 -56758118 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1081 394 146 0 24 chr11 65085925 65086009 -56757847 + CT-rich Low_complexity Low_complexity 3 84 0 1 1081 235 255 0 0 chr11 65086090 65086141 -56757715 - PB1D7 SINE Alu -64 56 6 1 1081 506 217 42 28 chr11 65086764 65086906 -56756950 + ID_B1 SINE B4 81 224 0 1 1081 204 125 0 0 chr11 65086929 65086961 -56756895 + (CAG)n Simple_repeat Simple_repeat 1 32 0 1 1081 195 100 0 0 chr11 65087702 65087732 -56756124 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1081 2665 19 3 6 chr11 65088389 65088700 -56755156 + L1Md_F2 LINE L1 6271 6580 -2 1 1081 421 253 59 47 chr11 65090015 65090185 -56753671 - MTEb LTR MaLR -38 341 170 1 1081 1234 142 124 19 chr11 65090199 65090473 -56753383 + ORR1C2 LTR MaLR 61 383 -1 1 1081 1918 234 60 44 chr11 65090563 65091093 -56752763 + RCHARR1 DNA MER1_type 287 814 -160 1 1081 279 79 0 0 chr11 65091093 65091131 -56752725 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1081 1918 234 60 44 chr11 65091131 65091256 -56752600 + RCHARR1 DNA MER1_type 815 951 -23 1 1081 378 250 137 44 chr11 65091481 65091686 -56752170 + RLTR12B LTR ERVK 1 224 -304 1 1081 250 152 0 33 chr11 65091815 65091876 -56751980 + CT-rich Low_complexity Low_complexity 2 60 0 1 1081 192 163 0 0 chr11 65092312 65092355 -56751501 + A-rich Low_complexity Low_complexity 1 43 0 1 1081 212 59 29 0 chr11 65092733 65092767 -56751089 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1081 244 250 67 86 chr11 65093500 65093605 -56750251 + MIRb SINE MIR 20 122 -146 1 1081 330 182 0 0 chr11 65093957 65094023 -56749833 + CT-rich Low_complexity Low_complexity 2 67 0 1 1081 405 195 39 0 chr11 65094344 65094421 -56749435 + ID4_ SINE ID 1 80 -3 1 1081 242 265 142 25 chr11 65094504 65094624 -56749232 - MIRb SINE MIR -19 249 116 1 1081 327 258 41 41 chr11 65095430 65095527 -56748329 + FordPrefect_a DNA Tip100 411 507 -1 1 1081 1028 141 6 0 chr11 65095619 65095796 -56748060 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1 1081 1114 88 7 0 chr11 65095800 65095947 -56747909 - B1_Mus1 SINE Alu 0 148 1 1 1081 207 267 0 0 chr11 65096316 65096361 -56747495 + GA-rich Low_complexity Low_complexity 6 50 0 1 1081 198 0 0 0 chr11 65096739 65096761 -56747095 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1081 314 295 21 0 chr11 65097154 65097249 -56746607 + LTR33 LTR ERVL 88 184 -331 1 1081 249 314 58 91 chr11 65097583 65097871 -56745985 + L2c LINE L2 3074 3387 0 1 1081 217 231 135 0 chr11 65100061 65100113 -56743743 - ID4_ SINE ID -23 60 2 1 1081 294 217 50 0 chr11 65100124 65100184 -56743672 - B1F2 SINE Alu -66 83 21 1 1081 480 35 0 0 chr11 65100438 65100496 -56743360 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1081 661 302 85 53 chr11 65101135 65101477 -56742379 - MTE2a LTR MaLR -8 371 19 1 1081 534 16 0 0 chr11 65101767 65101830 -56742026 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1081 279 0 0 0 chr11 65102077 65102108 -56741748 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1 1081 180 0 0 0 chr11 65102612 65102632 -56741224 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1081 607 320 4 25 chr11 65102894 65103105 -56740751 + B3A SINE B2 1 216 0 1 1081 311 65 22 0 chr11 65103581 65103627 -56740229 + (TATG)n Simple_repeat Simple_repeat 1 47 0 1 1081 593 297 28 0 chr11 65103634 65103779 -56740077 - B3A SINE B2 -47 151 3 1 1081 1811 185 15 62 chr11 65104138 65104541 -56739315 + ORR1C2 LTR MaLR 1 384 0 1 1081 288 0 0 0 chr11 65104632 65104664 -56739192 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1081 324 0 0 0 chr11 65104664 65104699 -56739157 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1081 246 349 43 14 chr11 65106328 65106469 -56737387 + MIR SINE MIR 25 174 -94 1 1081 182 303 35 52 chr11 65108259 65108374 -56735482 + MIRb SINE MIR 88 200 -68 1 1081 366 23 0 0 chr11 65108414 65108457 -56735399 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1081 217 65 87 0 chr11 65108806 65108852 -56735004 + T-rich Low_complexity Low_complexity 1 50 0 1 1081 229 300 59 37 chr11 65109920 65110055 -56733801 - MIRb SINE MIR -76 192 55 1 1081 466 271 89 80 chr11 65110261 65110610 -56733246 + MER96B DNA hAT 64 415 -2 1 1081 397 304 0 42 chr11 65111141 65111261 -56732595 + PB1D10 SINE Alu 1 115 -2 1 1081 210 222 46 31 chr11 65111995 65112060 -56731796 + CT-rich Low_complexity Low_complexity 5 70 0 1 1081 242 339 101 8 chr11 65113501 65113620 -56730236 + B1F2 SINE Alu 3 132 -17 1 1081 623 222 132 13 chr11 65113677 65113905 -56729951 + MER2 DNA MER2_type 86 340 -5 1 1081 195 42 0 0 chr11 65115648 65115672 -56728184 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1081 532 154 0 151 chr11 65115766 65115948 -56727908 + B1_Mus2 SINE Alu 9 149 0 1 1081 303 28 0 0 chr11 65116015 65116051 -56727805 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1081 441 287 155 7 chr11 65116411 65116720 -56727136 - L1MA8 LINE L1 -132 6159 5805 1 1081 453 309 81 0 chr11 65116901 65117050 -56726806 - RSINE1 SINE B4 -2 163 3 1 1081 465 289 32 51 chr11 65118369 65118526 -56725330 - B4A SINE B4 -133 159 6 1 1081 3189 74 0 10 chr11 65118528 65118939 -56724917 - MTB_Mm LTR MaLR 0 407 1 1 1081 7042 114 2 78 chr11 65118939 65120128 -56723728 - MTB_Mm-int LTR MaLR 0 1098 1 1 1081 3184 74 0 31 chr11 65120128 65120548 -56723308 - MTB_Mm LTR MaLR 0 407 1 1 1081 22 0 0 0 chr11 65120957 65120979 -56722877 + AT_rich Low_complexity Low_complexity 1 22 0 1 1081 897 194 95 16 chr11 65120991 65121180 -56722676 - B3 SINE B2 -10 206 3 1 1081 251 299 143 10 chr11 65122287 65122345 -56721511 + PB1D7 SINE Alu 10 79 -41 1 1081 288 0 0 0 chr11 65122345 65122377 -56721479 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1081 251 299 143 10 chr11 65122377 65122416 -56721440 + PB1D7 SINE Alu 80 120 0 1 1081 243 267 43 43 chr11 65122551 65122645 -56721211 - MLT1A1 LTR MaLR -313 95 2 1 1081 468 0 0 0 chr11 65123191 65123243 -56720613 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1081 360 306 28 91 chr11 65123364 65123664 -56720192 + B4A SINE B4 5 290 -2 1 1081 279 142 75 9 chr11 65124572 65124679 -56719177 + CT-rich Low_complexity Low_complexity 2 115 0 1 1081 396 283 117 48 chr11 65124962 65125190 -56718666 + MER82 DNA MER2_type 149 392 -261 1 1081 389 283 87 0 chr11 65125190 65125328 -56718528 + B4A SINE B4 2 151 -141 1 1081 745 188 7 7 chr11 65125337 65125492 -56718364 - URR1A DNA MER1_type 0 226 72 1 1081 415 371 6 17 chr11 65125791 65125964 -56717892 + MER82 DNA MER2_type 477 647 -6 1 1081 350 221 124 65 chr11 65126192 65126361 -56717495 + MTEa LTR MaLR 201 379 0 1 1081 504 27 40 0 chr11 65126510 65126584 -56717272 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1081 381 22 0 0 chr11 65126822 65126868 -56716988 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1081 252 0 0 0 chr11 65126868 65126895 -56716961 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1081 8509 73 13 2 chr11 65128270 65129730 -56714126 - L1_Mus3 LINE L1 0 6638 5156 2 1081 479 338 7 20 chr11 65130428 65130576 -56713280 + RSINE1 SINE B4 6 151 -14 2 1081 1078 274 89 9 chr11 65130856 65131206 -56712650 - MTE2b LTR MaLR 0 379 2 2 1081 263 71 24 0 chr11 65131974 65132016 -56711840 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1081 284 193 164 9 chr11 65133379 65133489 -56710367 + MER5A1 DNA MER1_type 2 128 -38 2 1081 190 0 67 0 chr11 65135624 65135654 -56708202 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1081 364 342 0 0 chr11 65135655 65135766 -56708090 - PB1D10 SINE Alu -5 112 2 2 1081 305 322 25 86 chr11 65135822 65135985 -56707871 - MTEa LTR MaLR -1 378 226 2 1081 368 352 50 6 chr11 65135978 65136138 -56707718 - MLT1B LTR MaLR -223 167 1 2 1081 761 262 37 56 chr11 65137258 65137472 -56706384 - B3 SINE B2 -4 212 3 2 1081 837 219 40 35 chr11 65137486 65137685 -56706171 - ID_B1 SINE B4 -2 222 23 2 1081 541 293 89 15 chr11 65138235 65138561 -56705295 - L1MD3 LINE L1 -1 7994 7645 2 1081 520 253 20 14 chr11 65139319 65139467 -56704389 - B1F SINE Alu 0 149 1 2 1081 1934 259 64 70 chr11 65139994 65140732 -56703124 + Lx9 LINE L1 6885 7617 -27 2 1081 284 304 19 10 chr11 65141020 65141123 -56702733 - MIR SINE MIR -110 152 49 2 1081 436 311 30 18 chr11 65142267 65142434 -56701422 + B4A SINE B4 102 270 -22 2 1081 313 165 11 34 chr11 65142437 65142525 -56701331 + CT-rich Low_complexity Low_complexity 2 87 0 2 1081 231 279 67 60 chr11 65142574 65142723 -56701133 + L1MDa LINE L1 2412 2561 -4072 2 135 612 275 75 64 chr11 65142734 65142945 -56700911 + B4A SINE B4 7 217 -75 2 1082 530 63 13 0 chr11 65142945 65143024 -56700832 + (CAAAC)n Simple_repeat Simple_repeat 2 81 0 2 1082 612 275 75 64 chr11 65143024 65143092 -56700764 + B4A SINE B4 218 289 -3 2 1082 400 317 37 5 chr11 65143193 65143380 -56700476 + L1MDa LINE L1 2613 2805 -3732 2 1082 370 311 86 29 chr11 65143577 65143961 -56699895 + L1MDa LINE L1 3066 3471 -3066 2 1082 227 299 169 7 chr11 65143968 65144116 -56699740 + B4A SINE B4 2 173 -119 2 1082 384 48 48 0 chr11 65144184 65144247 -56699609 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1082 233 320 29 20 chr11 65144407 65144509 -56699347 + B3 SINE B2 82 184 -32 2 1082 387 0 0 0 chr11 65144708 65144751 -56699105 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1082 231 273 34 11 chr11 65144821 65144910 -56698946 + L1MDa LINE L1 3746 3836 -2701 2 1082 1792 67 0 0 chr11 65144955 65145179 -56698677 - L1_Mus1 LINE L1 -4 6563 6340 2 1082 5380 44 0 0 chr11 65145180 65145815 -56698041 + L1_Mus1 LINE L1 5714 6348 -219 2 1082 598 299 120 37 chr11 65145821 65146305 -56697551 + L1MDa LINE L1 3876 4394 -2143 2 1082 258 362 125 46 chr11 65146355 65146723 -56697133 + L1M3a LINE L1 2 398 -5557 2 1082 247 261 164 9 chr11 65147317 65147433 -56696423 + L1MDa LINE L1 5242 5375 -1156 2 1082 486 230 47 73 chr11 65147498 65147690 -56696166 + L1MDa LINE L1 5505 5691 -840 2 1082 498 170 0 0 chr11 65147736 65147830 -56696026 + (CAG)n Simple_repeat Simple_repeat 2 95 0 2 1082 365 284 0 11 chr11 65147833 65147922 -56695934 - PB1D10 SINE Alu -11 106 19 2 1082 251 315 44 22 chr11 65147848 65147939 -56695917 - ID_B1 SINE B4 -51 173 81 2 1082 332 349 0 9 chr11 65149150 65149257 -56694599 - PB1 SINE Alu -15 112 7 2 1082 215 286 16 0 chr11 65150635 65150698 -56693158 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1082 510 152 0 0 chr11 65150712 65150804 -56693052 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1082 570 291 0 68 chr11 65150818 65150995 -56692861 - RSINE1 SINE B4 0 165 1 2 1082 750 153 7 14 chr11 65151005 65151144 -56692712 - B1F SINE Alu -1 148 11 2 1082 237 212 176 66 chr11 65151511 65151602 -56692254 - PB1D10 SINE Alu -7 110 10 2 1082 963 275 59 31 chr11 65152218 65152608 -56691248 - MTD LTR MaLR -16 403 3 2 1082 1576 144 69 43 chr11 65152645 65153037 -56690819 + RMER17C LTR ERVK 1 402 -8 2 1082 28 29 0 0 chr11 65153252 65153287 -56690569 + AT_rich Low_complexity Low_complexity 1 35 0 2 1082 22 0 0 0 chr11 65153594 65153616 -56690240 + AT_rich Low_complexity Low_complexity 1 22 0 2 1082 262 199 37 43 chr11 65153771 65153934 -56689922 + (TATG)n Simple_repeat Simple_repeat 2 163 0 2 1082 483 202 0 0 chr11 65155540 65155669 -56688187 + (CA)n Simple_repeat Simple_repeat 2 130 0 2 1082 219 301 0 14 chr11 65156727 65156801 -56687055 + RSINE1 SINE B4 1 73 -92 2 1082 294 317 9 9 chr11 65157057 65157162 -56686694 + Tigger5 DNA MER2_type 3 107 -2299 2 1082 180 0 0 0 chr11 65157312 65157332 -56686524 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1082 1188 63 0 0 chr11 65157337 65157480 -56686376 - B1_Mus1 SINE Alu -5 143 1 2 1082 275 301 0 12 chr11 65157480 65157564 -56686292 + Tigger5 DNA MER2_type 2324 2406 0 2 1082 261 0 0 0 chr11 65158728 65158757 -56685099 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1082 216 0 0 0 chr11 65158912 65158936 -56684920 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1082 1289 20 0 0 chr11 65158936 65159082 -56684774 - B1_Mm SINE Alu 0 147 2 2 1082 236 258 30 0 chr11 65159093 65159159 -56684697 + L1ME4a LINE L1 3634 3701 -2445 2 1082 634 78 9 37 chr11 65160464 65160571 -56683285 + (GGGGA)n Simple_repeat Simple_repeat 4 107 0 2 1082 272 273 55 32 chr11 65161004 65161113 -56682743 + ORR1E LTR MaLR 1 110 -260 2 1082 339 202 0 0 chr11 65162050 65162129 -56681727 + (TATG)n Simple_repeat Simple_repeat 1 79 0 2 1082 338 280 100 56 chr11 65162138 65162497 -56681359 + L1ME4a LINE L1 5702 6076 -48 2 1082 184 302 62 10 chr11 65163150 65163247 -56680609 - MIRb SINE MIR -120 148 47 2 1082 581 0 14 0 chr11 65164119 65164188 -56679668 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 2 1082 405 0 0 0 chr11 65165093 65165138 -56678718 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1082 378 0 0 0 chr11 65165188 65165230 -56678626 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1082 346 300 62 45 chr11 65165663 65165841 -56678015 - MLT1D LTR MaLR -312 193 13 2 1082 2133 115 12 61 chr11 65167039 65167382 -56676474 + ORR1A3 LTR MaLR 1 326 0 2 1082 694 208 156 49 chr11 65167678 65167984 -56675872 + MTD LTR MaLR 3 419 0 2 1082 872 191 20 35 chr11 65168210 65168411 -56675445 + MTD LTR MaLR 12 209 -210 2 1082 645 235 0 12 chr11 65168411 65168579 -56675277 + Lx5 LINE L1 6880 7045 -5 2 1082 852 229 36 59 chr11 65168579 65168845 -56675011 + MTD LTR MaLR 192 405 -14 2 1082 626 294 0 139 chr11 65169014 65169287 -56674569 - B4A SINE B4 -22 270 36 2 1082 229 106 43 0 chr11 65169381 65169428 -56674428 + L1MEf LINE L1 980 1028 -5172 2 1082 745 206 116 0 chr11 65169565 65169764 -56674092 + Lx9 LINE L1 7413 7634 -10 2 1082 500 179 19 13 chr11 65169777 65169914 -56673942 + B1_Mus2 SINE Alu 6 149 -1 2 1082 234 91 0 0 chr11 65169915 65169948 -56673908 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1082 310 195 143 24 chr11 65169960 65170044 -56673812 - MTC LTR MaLR -327 94 1 2 1082 21 57 0 0 chr11 65170413 65170448 -56673408 + AT_rich Low_complexity Low_complexity 1 35 0 2 1082 390 271 0 27 chr11 65170541 65170651 -56673205 - PB1D10 SINE Alu 0 117 11 2 1082 600 257 0 28 chr11 65171080 65171224 -56672632 + B3 SINE B2 23 162 -54 2 1082 190 132 18 70 chr11 65171322 65171436 -56672420 + A-rich Low_complexity Low_complexity 4 111 0 2 1082 29 47 0 0 chr11 65171442 65171485 -56672371 + AT_rich Low_complexity Low_complexity 1 43 0 2 1082 347 251 21 62 chr11 65171489 65171663 -56672193 + L1MC LINE L1 3866 4035 -2111 2 1082 224 98 0 109 chr11 65171925 65171971 -56671885 + PB1D9 SINE Alu 14 54 -66 2 1082 588 245 0 0 chr11 65171973 65172112 -56671744 + (CAGG)n Simple_repeat Simple_repeat 2 140 0 2 1082 266 221 76 25 chr11 65172112 65172191 -56671665 + RLTR25B LTR ERVK 427 509 -519 2 1082 698 101 0 0 chr11 65172126 65172225 -56671631 + B1_Mus2 SINE Alu 40 138 -9 2 1082 253 263 66 0 chr11 65172592 65172668 -56671188 + MIR SINE MIR 48 128 -134 2 1082 351 281 123 15 chr11 65172932 65173062 -56670794 + RSINE1 SINE B4 3 146 -19 2 1082 252 59 0 0 chr11 65173095 65173129 -56670727 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1082 814 309 66 0 chr11 65173624 65173912 -56669944 + ORR1D2 LTR MaLR 41 347 -23 2 1082 499 271 156 72 chr11 65175303 65175649 -56668207 + MLT1B LTR MaLR 13 387 -3 2 1082 3116 78 2 0 chr11 65177077 65177476 -56666380 + MTB LTR MaLR 1 400 0 2 1082 214 268 47 35 chr11 65178137 65178222 -56665634 - MIR SINE MIR -83 179 94 2 1082 240 312 8 51 chr11 65178749 65178867 -56664989 + MamGypLTR1c LTR Gypsy 669 774 -29 2 1082 1076 147 0 199 chr11 65179889 65180170 -56663686 + URR1B DNA MER1_type 1 225 0 2 1082 366 195 22 39 chr11 65181023 65181204 -56662652 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1082 318 276 42 17 chr11 65182443 65182561 -56661295 - LTR33A LTR ERVL -2 518 398 2 1082 710 299 129 48 chr11 65183589 65184045 -56659811 + MER44B DNA MER2_type 4 496 -54 2 1082 1608 189 34 31 chr11 65184364 65184713 -56659143 - MTD LTR MaLR -2 417 68 2 1082 661 313 98 40 chr11 65185877 65186699 -56657157 + L1MC3 LINE L1 6172 7041 -744 2 1082 231 125 0 0 chr11 65187094 65187134 -56656722 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1082 351 289 147 62 chr11 65187262 65187520 -56656336 + B4 SINE B4 2 281 -11 2 1082 201 163 77 24 chr11 65187562 65187732 -56656124 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1082 317 22 0 43 chr11 65187733 65187780 -56656076 + HAL1-3A_ME LINE L1 1976 2020 -838 2 1082 275 317 0 68 chr11 65187888 65188064 -56655792 + L1M2 LINE L1 4378 4541 -1602 2 1082 902 203 122 5 chr11 65188320 65188508 -56655348 - B3 SINE B2 -6 210 1 2 1082 221 262 60 0 chr11 65188996 65189080 -56654776 + MIRc SINE MIR 29 117 -151 2 1082 262 303 26 0 chr11 65189856 65189932 -56653924 - MLT1F2 LTR MaLR -447 113 36 2 1082 22 0 0 0 chr11 65190838 65190860 -56652996 + AT_rich Low_complexity Low_complexity 1 22 0 3 1082 242 56 28 0 chr11 65192075 65192111 -56651745 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1082 311 0 0 25 chr11 65192326 65192366 -56651490 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 3 1082 1447 223 190 69 chr11 65192393 65192952 -56650904 + RMER20B LTR ERVK 1 627 0 3 1082 246 270 78 43 chr11 65193182 65193298 -56650558 - ORR1E LTR MaLR -233 126 7 3 1082 315 282 109 0 chr11 65193566 65193722 -56650134 + L1ME3B LINE L1 5265 5437 -736 3 1082 247 301 171 38 chr11 65193883 65194094 -56649762 + L1ME3B LINE L1 5686 5924 -316 3 1082 530 304 49 12 chr11 65194556 65194802 -56649054 + L1M5 LINE L1 2556 2810 -3336 3 1082 328 262 111 0 chr11 65194799 65194925 -56648931 + L1M5 LINE L1 5619 5758 -482 3 1082 252 277 171 38 chr11 65194961 65195066 -56648790 + ID_B1 SINE B4 78 196 -28 3 1082 510 318 127 9 chr11 65195177 65195390 -56648466 + B4A SINE B4 13 250 -42 3 1082 326 23 23 0 chr11 65195400 65195443 -56648413 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1082 506 340 88 31 chr11 65195975 65196455 -56647401 + L1MB8 LINE L1 4773 5279 -867 3 1082 929 302 103 55 chr11 65196498 65196629 -56647227 + L1MB8 LINE L1 5336 5476 -702 3 1082 882 239 28 28 chr11 65196629 65196844 -56647012 + B3 SINE B2 1 215 -1 3 1082 929 302 103 55 chr11 65196844 65197352 -56646504 + L1MB8 LINE L1 5477 6006 -172 3 1082 32 67 0 0 chr11 65197557 65197617 -56646239 + AT_rich Low_complexity Low_complexity 1 60 0 3 1082 257 248 42 11 chr11 65197910 65197995 -56645861 + PB1D7 SINE Alu 1 82 -232 3 1082 666 216 106 22 chr11 65198739 65198919 -56644937 + B3 SINE B2 15 209 -7 3 1082 432 0 0 0 chr11 65198955 65199003 -56644853 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1082 650 281 11 22 chr11 65199126 65199308 -56644548 + B3A SINE B2 2 181 -17 3 1082 546 284 56 22 chr11 65199662 65199842 -56644014 + B3A SINE B2 3 188 -10 3 1082 323 200 14 28 chr11 65199840 65199912 -56643944 + B1_Mur3 SINE Alu 27 97 -52 3 1082 239 267 0 0 chr11 65201477 65201537 -56642319 - MER53 DNA hAT -34 159 100 3 1082 351 273 36 0 chr11 65202306 65202416 -56641440 - MER2 DNA MER2_type -138 207 94 3 1082 258 203 62 0 chr11 65203123 65203187 -56640669 + L1MEg LINE L1 1586 1653 -4431 3 1082 561 286 71 19 chr11 65203379 65203589 -56640267 + ID_B1 SINE B4 4 224 0 3 1082 1201 41 7 0 chr11 65204708 65204853 -56639003 - B1_Mus1 SINE Alu 0 148 3 3 1082 354 346 15 0 chr11 65204904 65205037 -56638819 - MER5A DNA MER1_type -51 138 4 3 1082 23 54 0 0 chr11 65205679 65205716 -56638140 + AT_rich Low_complexity Low_complexity 1 37 0 3 1082 581 158 15 62 chr11 65206550 65206683 -56637173 - B1_Mur4 SINE Alu -21 129 1 3 1082 287 287 113 0 chr11 65207021 65207135 -56636721 - B1F1 SINE Alu -9 140 9 3 1082 387 269 75 35 chr11 65207266 65207439 -56636417 - L1M6 LINE L1 -4707 1789 1610 3 1082 234 0 0 0 chr11 65207643 65207669 -56636187 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1082 231 317 0 12 chr11 65207859 65207942 -56635914 - MIRb SINE MIR -10 258 177 3 1082 251 257 191 0 chr11 65208165 65208270 -56635586 - L1M6 LINE L1 -5224 1272 1148 3 1082 450 0 0 0 chr11 65208520 65208570 -56635286 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1082 1102 71 200 0 chr11 65208573 65208743 -56635113 - L1_Mus1 LINE L1 0 6567 6364 3 1082 578 274 129 0 chr11 65209402 65209588 -56634268 - ID_B1 SINE B4 -10 214 5 3 1082 828 194 93 39 chr11 65209649 65209853 -56634003 - B3 SINE B2 0 216 2 3 1082 253 233 0 0 chr11 65211057 65211117 -56632739 - tRNA-Ala-GCY_ tRNA tRNA -13 62 3 3 1082 353 271 34 41 chr11 65211126 65211268 -56632588 - B1F SINE Alu 0 149 13 3 1082 336 94 0 0 chr11 65211635 65211688 -56632168 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 1082 396 88 0 0 chr11 65212530 65212587 -56631269 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1082 180 432 19 6 chr11 65212850 65213006 -56630850 + L2c LINE L2 3021 3178 -209 3 1082 474 18 0 0 chr11 65213448 65213503 -56630353 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1082 245 300 31 77 chr11 65213621 65213751 -56630105 + MLT1A LTR MaLR 68 191 -183 3 1082 219 216 0 54 chr11 65213756 65213849 -56630007 + CT-rich Low_complexity Low_complexity 1 88 0 3 1082 356 329 93 7 chr11 65213852 65214002 -56629854 + MLT1A LTR MaLR 177 339 -35 3 1082 257 267 26 26 chr11 65214331 65214408 -56629448 + PB1D10 SINE Alu 5 81 -36 3 1082 699 21 31 0 chr11 65214417 65214514 -56629342 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 3 1082 21 0 0 0 chr11 65214732 65214753 -56629103 + AT_rich Low_complexity Low_complexity 1 21 0 3 1082 360 0 0 0 chr11 65215164 65215204 -56628652 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1082 1842 251 17 5 chr11 65215326 65215735 -56628121 + MTD LTR MaLR 1 414 -5 3 1082 205 186 0 0 chr11 65216845 65216888 -56626968 + T-rich Low_complexity Low_complexity 1 43 0 3 1082 231 346 106 26 chr11 65217135 65217438 -56626418 - L1ME2 LINE L1 -218 5946 5620 3 1082 2164 285 45 93 chr11 65217919 65218258 -56625598 + L1_Mur3 LINE L1 3866 4214 -1666 3 1082 1536 49 0 16 chr11 65218258 65218445 -56625411 + B2_Mm1a SINE B2 1 184 -9 3 1082 2164 285 45 93 chr11 65218445 65218914 -56624942 + L1_Mur3 LINE L1 4215 4654 -1226 3 1082 1090 211 0 19 chr11 65218914 65219126 -56624730 + B3 SINE B2 2 209 -7 3 1082 2164 285 45 93 chr11 65219126 65219527 -56624329 + L1_Mur3 LINE L1 4655 5017 -863 3 1082 1668 229 82 67 chr11 65220992 65221483 -56622373 + Lx8 LINE L1 6655 7152 -321 3 1082 228 277 35 35 chr11 65221499 65221615 -56622241 + Lx8 LINE L1 7355 7470 -3 3 1082 1388 285 158 43 chr11 65221637 65221767 -56622089 - Lx9 LINE L1 -4 7640 7485 3 1082 306 0 0 0 chr11 65221767 65221801 -56622055 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1082 1388 285 158 43 chr11 65221801 65222481 -56621375 - Lx9 LINE L1 -160 7484 6737 3 1082 571 263 56 31 chr11 65222654 65222815 -56621041 + RSINE1 SINE B4 1 165 0 3 1082 26 0 0 0 chr11 65222828 65222854 -56621002 + AT_rich Low_complexity Low_complexity 1 26 0 3 1082 1634 209 41 63 chr11 65223685 65224098 -56619758 + MTD LTR MaLR 16 419 0 3 1082 21 0 0 0 chr11 65224219 65224240 -56619616 + AT_rich Low_complexity Low_complexity 1 21 0 3 1082 307 281 11 33 chr11 65224555 65224647 -56619209 + GA-rich Low_complexity Low_complexity 4 93 0 3 1082 636 268 56 7 chr11 65224647 65224928 -56618928 + L1M4 LINE L1 3277 3578 -2565 3 1082 446 345 48 48 chr11 65224999 65225453 -56618403 + L1M4 LINE L1 4910 5363 -783 3 1082 752 188 48 18 chr11 65225471 65225639 -56618217 - B3A SINE B2 0 198 26 3 1082 386 308 88 118 chr11 65225840 65225974 -56617882 + L1MB5 LINE L1 5558 5670 -504 3 1082 1051 237 0 5 chr11 65225974 65226186 -56617670 + B3 SINE B2 1 211 -5 3 1082 386 308 88 118 chr11 65226186 65226453 -56617403 + L1MB5 LINE L1 5671 5918 -256 3 1082 1219 194 5 0 chr11 65226453 65226675 -56617181 + URR1B DNA MER1_type 1 223 -2 3 1082 386 308 88 118 chr11 65226675 65226831 -56617025 + L1MB5 LINE L1 5919 6099 -75 3 1082 662 286 77 0 chr11 65228280 65228476 -56615380 - Tigger7 DNA MER2_type -4 2487 2277 3 1082 320 274 28 0 chr11 65228677 65228783 -56615073 - L1M5 LINE L1 -596 5644 5536 3 1082 274 299 0 25 chr11 65229381 65229460 -56614396 + ID4_ SINE ID 3 79 -4 3 1082 270 0 0 0 chr11 65229467 65229497 -56614359 + (TTG)n Simple_repeat Simple_repeat 3 32 0 3 1082 297 0 0 0 chr11 65229497 65229530 -56614326 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3 1082 363 174 0 0 chr11 65229692 65229778 -56614078 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1082 451 248 0 0 chr11 65229914 65230015 -56613841 - B1_Mur1 SINE Alu -9 140 40 3 1082 221 100 50 0 chr11 65230023 65230063 -56613793 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 3 1082 286 282 0 0 chr11 65230230 65230301 -56613555 - B3A SINE B2 -127 71 1 3 1082 235 290 0 14 chr11 65230344 65230414 -56613442 - L1M5 LINE L1 -389 5775 5707 3 1082 782 242 12 29 chr11 65230414 65230656 -56613200 - L1MD LINE L1 -830 5316 5079 3 1082 463 308 13 19 chr11 65230797 65230956 -56612900 - MER5A1 DNA MER1_type 0 166 9 3 1082 216 97 0 0 chr11 65231089 65231120 -56612736 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 1082 556 183 8 15 chr11 65231505 65231638 -56612218 + CT-rich Low_complexity Low_complexity 3 134 0 3 1082 351 0 0 0 chr11 65231850 65231889 -56611967 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1082 260 293 30 26 chr11 65233460 65233567 -56610289 - MLT2B5 LTR ERVL -225 329 226 3 1082 31 26 0 0 chr11 65234112 65234150 -56609706 + AT_rich Low_complexity Low_complexity 1 38 0 3 1082 285 75 0 0 chr11 65234738 65234778 -56609078 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1082 212 250 50 50 chr11 65234799 65234879 -56608977 - ID4 SINE ID -1 82 3 3 1082 360 64 0 0 chr11 65235951 65235998 -56607858 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1082 276 176 0 0 chr11 65236066 65236134 -56607722 + (TCTG)n Simple_repeat Simple_repeat 1 68 0 3 1082 583 270 6 6 chr11 65236879 65237043 -56606813 + B3 SINE B2 48 211 -5 3 1082 385 289 39 54 chr11 65237383 65237625 -56606231 + L1MA9 LINE L1 6009 6251 -61 3 1082 288 212 148 12 chr11 65237627 65237708 -56606148 + Lx8 LINE L1 7129 7220 -253 3 1082 392 200 0 11 chr11 65237784 65237875 -56605981 + GA-rich Low_complexity Low_complexity 2 91 0 3 1082 379 166 31 37 chr11 65238107 65238270 -56605586 + (CA)n Simple_repeat Simple_repeat 1 162 0 3 1082 245 191 34 45 chr11 65238278 65238366 -56605490 + (CATA)n Simple_repeat Simple_repeat 3 89 0 3 1082 404 188 11 33 chr11 65238367 65238549 -56605307 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 1082 348 189 44 18 chr11 65238571 65238582 -56605274 + (CA)n Simple_repeat Simple_repeat 1 11 0 3 1082 537 58 0 0 chr11 65238582 65238651 -56605205 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 1082 348 189 44 18 chr11 65238651 65238752 -56605104 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1082 217 97 0 0 chr11 65238934 65238965 -56604891 - B1F SINE Alu -112 37 7 3 1082 561 184 108 45 chr11 65239000 65239176 -56604680 - RMER1B Other Other -2 1064 878 3 1082 253 323 11 21 chr11 65239535 65239630 -56604226 - Kanga1 DNA Tc2 -1452 293 200 3 1082 293 343 0 10 chr11 65239795 65239895 -56603961 + MER44D DNA MER2_type 3 101 -604 3 1082 460 119 32 21 chr11 65239895 65239989 -56603867 + GA-rich Low_complexity Low_complexity 3 97 0 4 1082 191 36 36 0 chr11 65240092 65240120 -56603736 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1082 247 338 35 14 chr11 65240590 65240734 -56603122 + L2a LINE L2 3280 3426 0 4 1082 290 304 87 29 chr11 65241979 65242186 -56601670 - Arthur1 DNA Tip100 -81 3866 3648 4 1082 264 253 80 0 chr11 65242340 65242415 -56601441 + ID2 SINE ID 2 82 -1 4 1082 466 298 8 0 chr11 65244990 65245241 -56598615 + (TG)n Simple_repeat Simple_repeat 1 253 0 4 1082 419 296 37 22 chr11 65245460 65245595 -56598261 - MER2 DNA MER2_type -1 344 208 4 1082 324 234 170 31 chr11 65246351 65246403 -56597453 - CYRA11_Mm Unknown Y-chromosome -233 384 204 4 1082 574 149 9 0 chr11 65246403 65246510 -56597346 + URR1B DNA MER1_type 86 193 -32 4 1082 285 219 98 0 chr11 65247085 65247167 -56596689 - MLT1D LTR MaLR -9 618 529 4 1082 495 283 7 61 chr11 65247208 65247355 -56596501 + RSINE1 SINE B4 7 145 -20 4 1082 717 12 0 0 chr11 65247385 65247467 -56596389 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 1082 372 277 107 56 chr11 65247469 65247721 -56596135 - MLT1D LTR MaLR -102 403 139 4 1082 393 316 22 15 chr11 65248493 65248628 -56595228 + ORR1E LTR MaLR 57 192 -167 4 1082 2209 238 104 40 chr11 65250547 65251172 -56592684 + Lx8 LINE L1 6483 7147 -326 4 1082 547 304 43 0 chr11 65251421 65251559 -56592297 - RSINE1 SINE B4 -19 146 3 4 1082 348 299 80 11 chr11 65251899 65252075 -56591781 - MER3 DNA MER1_type -1 208 21 4 1082 659 287 19 0 chr11 65252821 65252978 -56590878 - RSINE1 SINE B4 0 165 6 4 1082 345 244 75 22 chr11 65253278 65253412 -56590444 + L1ME4a LINE L1 5982 6122 -2 4 1082 517 305 24 18 chr11 65255135 65255302 -56588554 + B4A SINE B4 9 176 -116 4 1082 478 302 69 82 chr11 65255330 65255637 -56588219 + B4 SINE B4 3 292 0 4 1082 1080 56 41 21 chr11 65255673 65255818 -56588038 + B1_Mus1 SINE Alu 1 148 0 4 1082 531 244 0 8 chr11 65255905 65256052 -56587804 + L1MC LINE L1 5157 5302 -844 4 1082 756 280 57 104 chr11 65256223 65256606 -56587250 - MTE2a LTR MaLR -14 365 1 4 1082 1179 69 0 0 chr11 65256778 65256953 -56586903 + (GA)n Simple_repeat Simple_repeat 2 176 0 4 1082 266 312 143 13 chr11 65258046 65258270 -56585586 + L1MC4 LINE L1 6729 6981 -1061 4 1082 610 322 71 26 chr11 65258551 65258860 -56584996 - MER2 DNA MER2_type 0 345 23 4 1082 2146 185 61 37 chr11 65258891 65259300 -56584556 + MTD LTR MaLR 1 419 0 4 1082 317 145 16 0 chr11 65259666 65259728 -56584128 + (TGAA)n Simple_repeat Simple_repeat 2 64 0 4 1082 28 29 0 0 chr11 65260728 65260763 -56583093 + AT_rich Low_complexity Low_complexity 1 35 0 4 1082 1117 301 87 26 chr11 65260770 65261492 -56582364 + L1MA4A LINE L1 5191 5932 -1764 4 1082 360 0 0 0 chr11 65261537 65261577 -56582279 + (TATG)n Simple_repeat Simple_repeat 1 40 0 4 1082 1483 146 4 16 chr11 65261580 65261830 -56582026 + MTC LTR MaLR 167 413 -8 4 1082 347 299 53 65 chr11 65262165 65262472 -56581384 - MTEb LTR MaLR 0 379 51 4 1082 21 0 0 0 chr11 65262593 65262614 -56581242 + AT_rich Low_complexity Low_complexity 1 21 0 4 1082 803 262 12 79 chr11 65263243 65263483 -56580373 + ID_B1 SINE B4 1 224 0 4 1082 805 266 25 136 chr11 65263793 65263891 -56579965 + B4 SINE B4 1 97 -195 4 1082 906 226 45 5 chr11 65263891 65264091 -56579765 + B3 SINE B2 1 208 -8 4 1082 805 266 25 136 chr11 65264091 65264309 -56579547 + B4 SINE B4 98 282 -10 4 1082 428 215 99 43 chr11 65264658 65264799 -56579057 - ID_B1 SINE B4 -45 247 95 4 1082 2041 131 41 41 chr11 65265281 65265646 -56578210 - IAPLTR1_Mm LTR ERVK -2 365 1 4 1082 58954 12 3 10 chr11 65265646 65272168 -56571688 - IAPEz-int LTR ERVK 0 6481 1 4 1082 1858 114 3 87 chr11 65272169 65272525 -56571331 - IAPLTR1_Mm LTR ERVK -11 326 1 4 1082 435 83 0 0 chr11 65272577 65272637 -56571219 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1082 657 185 23 0 chr11 65272949 65273079 -56570777 - B1_Mur3 SINE Alu -16 133 1 4 1082 323 303 20 20 chr11 65273204 65273305 -56570551 - PB1D10 SINE Alu -15 102 2 4 1082 717 302 85 0 chr11 65273395 65273676 -56570180 - L1MA6 LINE L1 0 6300 5996 4 1083 693 285 17 11 chr11 65274359 65274540 -56569316 + B3A SINE B2 1 182 -16 4 1083 385 268 80 23 chr11 65274698 65274874 -56568982 - L1M7 LINE L1 -4791 1427 1242 4 1083 670 236 30 24 chr11 65275876 65276045 -56567811 - B3 SINE B2 -38 178 9 4 1083 393 220 11 11 chr11 65276843 65276935 -56566921 + MTE2a LTR MaLR 11 102 -277 4 1083 387 0 0 0 chr11 65276935 65276978 -56566878 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1083 368 328 23 23 chr11 65277680 65277808 -56566048 + C-rich Low_complexity Low_complexity 1 128 0 4 1083 612 69 50 0 chr11 65278161 65278309 -56565547 - RMER6A LTR ERVK -553 203 1 4 1083 310 140 0 50 chr11 65278381 65278441 -56565415 - MLT2B2 LTR ERVL -456 59 3 4 1083 873 0 0 0 chr11 65278486 65278583 -56565273 + (GAA)n Simple_repeat Simple_repeat 3 99 0 4 1083 344 319 8 34 chr11 65278709 65278826 -56565030 + PB1 SINE Alu 1 114 -13 4 1083 275 134 30 0 chr11 65278984 65279051 -56564805 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 4 1083 433 283 39 7 chr11 65279255 65279408 -56564448 + MER2 DNA MER2_type 134 291 -54 4 1083 280 247 45 36 chr11 65279407 65279509 -56564347 + MLT2B3 LTR ERVL 9 109 -406 4 1083 243 319 33 25 chr11 65279710 65279832 -56564024 + MTEa LTR MaLR 256 378 -1 4 1083 1592 170 89 12 chr11 65280136 65280463 -56563393 - ORR1B2 LTR MaLR -15 352 1 4 1083 2544 132 55 26 chr11 65280463 65280953 -56562903 - ORR1B2-int LTR MaLR 0 1509 1006 4 1083 1190 129 0 0 chr11 65280949 65281142 -56562714 - ORR1B2-int LTR MaLR -1245 264 72 4 1083 2795 103 23 2 chr11 65281498 65281897 -56561959 - MTB_Mm LTR MaLR 0 407 1 4 1083 305 299 134 0 chr11 65282187 65282284 -56561572 + B1F SINE Alu 29 138 -11 4 1083 328 123 14 14 chr11 65282542 65282616 -56561240 + GA-rich Low_complexity Low_complexity 3 76 0 4 1083 275 347 85 39 chr11 65283271 65283400 -56560456 - LTR33 LTR ERVL -356 159 25 4 1083 225 0 0 0 chr11 65284834 65284859 -56558997 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1083 284 333 9 9 chr11 65285057 65285169 -56558687 - L1MC2 LINE L1 -172 6172 6061 4 1083 426 20 0 0 chr11 65286298 65286349 -56557507 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1083 322 259 28 90 chr11 65286368 65286512 -56557344 - L1MA4 LINE L1 -381 5919 5785 4 1083 218 182 0 35 chr11 65286513 65286570 -56557286 + (TATG)n Simple_repeat Simple_repeat 4 58 0 4 1083 386 224 0 0 chr11 65286577 65286653 -56557203 - L1MA4 LINE L1 -500 5791 5716 4 1083 566 294 95 38 chr11 65287501 65287847 -56556009 + MLT1A LTR MaLR 5 370 -4 4 1083 447 238 0 0 chr11 65288624 65288775 -56555081 + (TG)n Simple_repeat Simple_repeat 2 152 0 4 1083 318 50 0 0 chr11 65290452 65290492 -56553364 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 4 1083 354 308 41 76 chr11 65290831 65291372 -56552484 + L1M4 LINE L1 3038 3556 -2590 4 1083 216 0 0 0 chr11 65291405 65291429 -56552427 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1083 735 234 36 45 chr11 65291525 65291749 -56552107 - B4 SINE B4 -38 254 33 4 1083 305 358 28 0 chr11 65291996 65292105 -56551751 + PB1D10 SINE Alu 1 112 -5 4 1083 679 50 10 10 chr11 65292116 65292148 -56551708 + (GAA)n Simple_repeat Simple_repeat 1 33 0 4 1083 1161 79 11 11 chr11 65292148 65292328 -56551528 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1083 679 50 10 10 chr11 65292328 65292396 -56551460 + (GAA)n Simple_repeat Simple_repeat 1 68 0 4 1083 634 317 92 21 chr11 65292834 65293118 -56550738 + MLT1A0 LTR MaLR 62 365 0 4 1083 278 267 22 22 chr11 65294197 65294289 -56549567 - MER5B DNA MER1_type -85 93 2 4 1083 448 311 32 32 chr11 65294923 65295109 -56548747 - MLT1A0 LTR MaLR -46 319 134 4 1083 275 61 0 58 chr11 65295252 65295304 -56548552 + B1_Mm SINE Alu 99 147 0 4 1083 271 60 20 20 chr11 65295308 65295359 -56548497 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1083 608 297 10 35 chr11 65295471 65295670 -56548186 - B3A SINE B2 -4 194 1 4 1083 322 323 76 43 chr11 65295757 65295967 -56547889 + MT2A LTR ERVL 3 219 -314 4 1083 298 358 88 64 chr11 65295970 65296391 -56547465 - MER74A LTR ERVL -55 503 73 4 1083 195 162 0 0 chr11 65296547 65296584 -56547272 + GA-rich Low_complexity Low_complexity 41 77 0 4 1083 547 279 70 6 chr11 65296664 65296873 -56546983 + L1MA7 LINE L1 5721 5940 -372 4 1083 483 300 92 101 chr11 65296917 65297125 -56546731 + MER2 DNA MER2_type 11 215 -130 4 1083 393 214 125 10 chr11 65297125 65297229 -56546627 + PB1D10 SINE Alu 2 117 0 4 1083 483 300 92 101 chr11 65297229 65297357 -56546499 + MER2 DNA MER2_type 216 344 -1 4 1083 262 264 11 11 chr11 65297369 65297457 -56546399 + L1MA7 LINE L1 5963 6050 -262 4 1083 398 247 10 10 chr11 65298467 65298565 -56545291 + PB1D9 SINE Alu 21 118 -2 4 1083 882 76 0 0 chr11 65299391 65299510 -56544346 + (GAGAA)n Simple_repeat Simple_repeat 1 119 0 4 1083 376 312 6 38 chr11 65299566 65299749 -56544107 + (CATA)n Simple_repeat Simple_repeat 3 179 0 4 1083 23 0 0 0 chr11 65300343 65300366 -56543490 + AT_rich Low_complexity Low_complexity 1 23 0 4 1083 360 255 103 7 chr11 65301086 65301232 -56542624 - MER5A1 DNA MER1_type -4 162 3 4 1083 422 224 20 179 chr11 65301382 65301583 -56542273 + RMER15 LTR ERVL 2 170 -405 4 1083 403 356 0 0 chr11 65301567 65301702 -56542154 + RMER15 LTR ERVL 277 411 -164 4 1083 1166 106 0 11 chr11 65301861 65302043 -56541813 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1083 717 45 0 0 chr11 65302044 65302133 -56541723 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 4 1083 836 262 38 30 chr11 65302671 65302935 -56540921 + MER2 DNA MER2_type 60 325 -20 4 1083 1410 56 0 0 chr11 65303002 65303182 -56540674 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1083 189 0 0 0 chr11 65303536 65303557 -56540299 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 4 1083 441 0 0 0 chr11 65305232 65305281 -56538575 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 1083 237 234 236 39 chr11 65306091 65306269 -56537587 - HAL1 LINE L1 -267 2240 2028 5 1083 244 350 72 0 chr11 65306621 65306718 -56537138 + PB1D10 SINE Alu 1 104 -13 5 1083 816 107 0 0 chr11 65306718 65306839 -56537017 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 5 1083 1948 168 100 18 chr11 65306883 65307272 -56536584 - MTC LTR MaLR 0 421 1 5 1083 374 0 22 0 chr11 65307303 65307349 -56536507 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1083 629 259 108 69 chr11 65307962 65308294 -56535562 - MLT1A0 LTR MaLR -20 345 1 5 1083 226 307 89 0 chr11 65308769 65308870 -56534986 - MER121 Unknown Unknown -238 174 65 5 1083 240 359 55 20 chr11 65309051 65309250 -56534606 + L2 LINE L2 2604 2809 -610 5 1083 332 372 18 35 chr11 65309309 65309535 -56534321 - MLT2D LTR ERVL -24 390 169 5 1083 348 127 0 0 chr11 65309551 65309606 -56534250 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1083 487 153 10 10 chr11 65309857 65309956 -56533900 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 1083 5461 18 0 0 chr11 65310145 65310757 -56533099 - L1Md_A LINE L1 0 6582 5971 5 1083 576 0 0 0 chr11 65310757 65310819 -56533037 + L1_Mm LINE L1 4681 4742 -1141 5 1083 573 295 22 58 chr11 65311433 65311656 -56532200 + ID_B1 SINE B4 2 216 -8 5 1083 227 342 80 25 chr11 65312140 65312302 -56531554 + RMER15 LTR ERVL 347 517 -58 5 1083 448 258 98 68 chr11 65312369 65312695 -56531161 + ORR1E LTR MaLR 11 379 0 5 1083 1245 162 9 43 chr11 65313017 65313249 -56530607 - URR1B DNA MER1_type 0 225 2 5 1083 522 0 0 0 chr11 65313279 65313337 -56530519 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1083 771 276 129 70 chr11 65313656 65314097 -56529759 + MLT1C LTR MaLR 1 467 0 5 1083 288 327 63 40 chr11 65314108 65314283 -56529573 - MLT1G1 LTR MaLR -126 453 275 5 1083 544 264 78 25 chr11 65315695 65315940 -56527916 + MER113A DNA MER1_type 1 258 -56 5 1083 847 175 0 7 chr11 65316090 65316234 -56527622 + B1_Mus1 SINE Alu 1 143 -5 5 1083 612 40 0 0 chr11 65316237 65316312 -56527544 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1083 525 32 0 0 chr11 65316331 65316394 -56527462 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 5 1083 470 289 188 19 chr11 65317515 65317824 -56526032 + MTEa LTR MaLR 6 367 -12 5 1083 327 289 44 15 chr11 65317889 65318026 -56525830 + LTR16E1 LTR ERVL 397 537 -1 5 1083 803 234 33 24 chr11 65319542 65319752 -56524104 - ORR1D1 LTR MaLR 0 374 163 5 1083 180 153 54 27 chr11 65319752 65319826 -56524030 + (CAGAGA)n Simple_repeat Simple_repeat 4 79 0 5 1083 594 203 29 117 chr11 65319829 65319859 -56523997 - ORR1D1 LTR MaLR -190 188 163 5 1083 621 80 0 0 chr11 65319859 65319947 -56523909 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 1083 755 158 37 38 chr11 65319947 65320122 -56523734 - ORR1D1 LTR MaLR -216 162 1 5 1083 369 43 0 0 chr11 65320216 65320263 -56523593 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 5 1083 438 261 173 31 chr11 65320999 65321152 -56522704 - B3 SINE B2 -30 186 10 5 1083 3531 77 4 4 chr11 65321152 65321620 -56522236 - L1_Mus3 LINE L1 0 6638 6171 5 1083 3289 276 101 48 chr11 65322133 65322398 -56521458 + Lx8 LINE L1 6137 6399 -1074 5 1083 488 345 5 63 chr11 65322398 65322605 -56521251 + B3A SINE B2 4 198 0 5 1083 3289 276 101 48 chr11 65322605 65323428 -56520428 + Lx8 LINE L1 6400 7267 -206 5 1083 918 104 6 13 chr11 65323428 65323584 -56520272 + (GAA)n Simple_repeat Simple_repeat 1 155 0 5 1083 3289 276 101 48 chr11 65323584 65323759 -56520097 + Lx8 LINE L1 7268 7468 -5 5 1083 227 309 65 9 chr11 65324856 65324964 -56518892 + L1M5 LINE L1 3008 3121 -3025 5 1083 1294 153 13 9 chr11 65325131 65325355 -56518501 - URR1A DNA MER1_type 0 226 2 5 1083 265 262 38 28 chr11 65325400 65325506 -56518350 + L1M5 LINE L1 3504 3610 -2536 5 1083 826 288 153 44 chr11 65326149 65327058 -56516798 + L1M5 LINE L1 3710 4717 -1429 5 1083 499 260 37 55 chr11 65327146 65327309 -56516547 - RSINE1 SINE B4 0 165 6 5 1083 212 147 0 0 chr11 65327417 65327451 -56516405 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1083 1003 209 79 42 chr11 65327482 65327837 -56516019 + RLTR9A LTR ERVK 1 368 0 5 1083 221 32 94 31 chr11 65327839 65327903 -56515953 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 5 1083 697 65 64 13 chr11 65327917 65328073 -56515783 + (TCTA)n Simple_repeat Simple_repeat 3 166 0 5 1083 215 152 22 0 chr11 65328076 65328122 -56515734 + CT-rich Low_complexity Low_complexity 2 48 0 5 1083 228 250 16 16 chr11 65328239 65328300 -56515556 + MLT1F1 LTR MaLR 509 569 0 5 1083 570 140 0 0 chr11 65328742 65328856 -56515000 + (TC)n Simple_repeat Simple_repeat 1 114 0 5 1083 883 301 97 14 chr11 65329007 65329378 -56514478 - L1MA4 LINE L1 -416 5884 5483 5 1083 1145 231 71 37 chr11 65329385 65329735 -56514121 + ORR1D2 LTR MaLR 1 362 -8 5 1083 311 333 20 0 chr11 65330419 65330521 -56513335 + CT-rich Low_complexity Low_complexity 2 105 0 5 1083 462 36 0 0 chr11 65331111 65331167 -56512689 + (CTCTG)n Simple_repeat Simple_repeat 3 58 0 5 1083 238 323 31 70 chr11 65331920 65332206 -56511650 + L1M5 LINE L1 2141 2415 -3731 5 1083 279 0 0 0 chr11 65332961 65332992 -56510864 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1083 343 247 11 0 chr11 65333227 65333316 -56510540 + B4 SINE B4 3 92 -200 5 1083 7476 101 3 14 chr11 65333319 65335015 -56508841 + L1Md_F2 LINE L1 530 2201 -3682 5 1083 22642 59 4 6 chr11 65335015 65337912 -56505944 + L1Md_F2 LINE L1 2695 5586 -297 5 1083 8092 53 1 3 chr11 65337912 65338897 -56504959 + L1Md_F2 LINE L1 5587 6569 -13 5 1083 733 233 46 10 chr11 65339057 65339252 -56504604 + B3 SINE B2 1 202 -14 5 1083 248 324 0 0 chr11 65339294 65339362 -56504494 + B1F2 SINE Alu 1 68 -81 5 1083 501 62 0 0 chr11 65339395 65339460 -56504396 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1083 329 228 38 12 chr11 65339925 65340005 -56503851 - ORR1E LTR MaLR -225 134 53 5 1083 238 26 51 0 chr11 65341018 65341057 -56502799 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 5 1083 760 130 99 0 chr11 65341061 65341192 -56502664 - B1_Mur4 SINE Alu -6 144 1 5 1083 504 111 0 0 chr11 65341217 65341298 -56502558 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1083 305 271 46 18 chr11 65341811 65341920 -56501936 + L1MB8 LINE L1 6037 6148 -30 5 1083 209 195 0 0 chr11 65341929 65341970 -56501886 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1083 826 138 13 58 chr11 65342601 65342755 -56501101 - B1_Mur3 SINE Alu -1 148 2 5 1083 273 89 0 0 chr11 65342844 65342889 -56500967 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1083 327 49 0 0 chr11 65342890 65342931 -56500925 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1083 259 355 0 0 chr11 65344665 65344741 -56499115 + MLT1H2 LTR MaLR 66 141 -348 5 1083 332 235 35 90 chr11 65344893 65345038 -56498818 + MLT1H LTR MaLR 411 547 -2 5 1083 342 0 0 0 chr11 65345405 65345443 -56498413 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1083 504 0 0 0 chr11 65345689 65345745 -56498111 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1083 997 53 111 15 chr11 65346871 65347006 -56496850 + B1_Mus1 SINE Alu 1 148 0 5 1083 1015 184 77 0 chr11 65347305 65347501 -56496355 + B3 SINE B2 2 212 -4 5 1083 23 0 0 0 chr11 65347816 65347839 -56496017 + AT_rich Low_complexity Low_complexity 1 23 0 5 1083 818 281 65 4 chr11 65348695 65348970 -56494886 + B4A SINE B4 1 292 0 5 1083 550 69 35 0 chr11 65349003 65349090 -56494766 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 5 1083 203 200 0 22 chr11 65349510 65349556 -56494300 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1083 186 43 0 0 chr11 65350100 65350123 -56493733 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1083 1940 149 47 15 chr11 65352514 65352855 -56491001 + MTD LTR MaLR 1 352 -67 5 1083 189 107 0 0 chr11 65352942 65352970 -56490886 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1083 312 289 103 7 chr11 65354346 65354482 -56489374 - B1F1 SINE Alu 0 149 1 5 1083 1146 68 7 0 chr11 65354698 65354844 -56489012 + B1_Mm SINE Alu 1 147 0 5 1083 3895 43 2 2 chr11 65354992 65355458 -56488398 - L1Md_F2 LINE L1 -12 6570 6105 5 1083 511 0 0 0 chr11 65355458 65355517 -56488339 + L1_Mm LINE L1 4319 4377 -1506 5 1083 330 26 0 0 chr11 65356420 65356459 -56487397 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1083 219 36 0 0 chr11 65356504 65356532 -56487324 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1083 303 227 40 0 chr11 65356533 65356608 -56487248 - B1F SINE Alu -52 97 20 5 1083 462 79 0 0 chr11 65356680 65356743 -56487113 + (TCCCC)n Simple_repeat Simple_repeat 1 63 0 5 1083 23 33 0 0 chr11 65356955 65356985 -56486871 + AT_rich Low_complexity Low_complexity 1 30 0 5 1083 1130 217 95 89 chr11 65356991 65357361 -56486495 - MTD LTR MaLR 0 419 48 5 1083 255 290 221 24 chr11 65358171 65358298 -56485558 + Arthur1B DNA Tip100 180 331 -894 5 1083 390 207 34 11 chr11 65359976 65360064 -56483792 + B1_Mur2 SINE Alu 60 149 0 5 1083 1757 202 98 5 chr11 65360181 65360559 -56483297 + MTC LTR MaLR 9 421 0 5 1083 239 322 37 68 chr11 65360962 65361125 -56482731 - MLT1K LTR MaLR -34 561 404 5 1083 229 308 21 21 chr11 65361286 65361379 -56482477 - MTE2b LTR MaLR -12 367 275 5 1083 230 305 0 0 chr11 65361529 65361588 -56482268 - MLT1K LTR MaLR -293 81 23 5 1083 186 189 0 0 chr11 65361729 65361766 -56482090 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 5 1083 381 43 0 0 chr11 65361783 65361830 -56482026 + (TATG)n Simple_repeat Simple_repeat 2 48 0 5 1083 849 253 82 38 chr11 65361850 65362166 -56481690 - L1MA4A LINE L1 -381 5922 5593 5 1083 1037 242 44 44 chr11 65362180 65362478 -56481378 - ORR1D2 LTR MaLR 0 370 73 5 1083 738 87 0 0 chr11 65362719 65362822 -56481034 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 5 1083 873 262 0 6 chr11 65363379 65363552 -56480304 + B3A SINE B2 1 172 -26 5 1083 660 13 0 0 chr11 65363562 65363639 -56480217 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1083 567 279 124 15 chr11 65363681 65363947 -56479909 + L1M4 LINE L1 2528 2822 -3324 6 1083 359 256 112 16 chr11 65365052 65365270 -56478586 - LTR33A LTR ERVL -85 446 214 6 1083 247 321 24 24 chr11 65365388 65365471 -56478385 + MLT1A LTR MaLR 77 159 -215 6 1083 345 24 0 0 chr11 65365480 65365522 -56478334 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 6 1083 903 19 0 0 chr11 65366188 65366293 -56477563 + (GA)n Simple_repeat Simple_repeat 1 105 0 6 1083 860 161 0 9 chr11 65366527 65366758 -56477098 + (TG)n Simple_repeat Simple_repeat 1 228 0 6 1083 280 185 37 0 chr11 65366758 65366812 -56477044 - ID SINE ID -144 80 25 6 1083 557 254 56 44 chr11 65367892 65368221 -56475635 + MLT1B LTR MaLR 50 389 -78 6 1083 243 282 63 13 chr11 65368461 65368540 -56475316 - RSINE1 SINE B4 -67 98 16 6 1083 257 206 16 16 chr11 65368658 65368722 -56475134 - MLT1A0 LTR MaLR 0 365 302 6 1083 948 232 149 71 chr11 65370006 65370414 -56473442 - RMER5 LTR ERV1 -94 440 1 6 1083 688 282 148 33 chr11 65370703 65371007 -56472849 - MER2 DNA MER2_type -5 340 2 6 1083 485 16 0 16 chr11 65372333 65372396 -56471460 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1083 1012 295 7 56 chr11 65372486 65372791 -56471065 + B4A SINE B4 1 290 -2 6 1083 198 0 0 0 chr11 65372849 65372871 -56470985 + (TAAAAA)n Simple_repeat Simple_repeat 4 25 0 6 1083 327 275 50 0 chr11 65373888 65374008 -56469848 + Lx7 LINE L1 7565 7690 -6 6 1083 474 65 0 0 chr11 65374161 65374223 -56469633 + (TATG)n Simple_repeat Simple_repeat 4 65 0 6 1083 310 340 104 20 chr11 65375024 65375225 -56468631 + L1MEg LINE L1 1160 1377 -4865 6 1083 337 329 47 34 chr11 65375675 65375753 -56468103 + L1MEg LINE L1 2535 2612 -3534 6 1083 1175 75 0 0 chr11 65375753 65375900 -56467956 + B1_Mus2 SINE Alu 1 147 0 6 1083 337 329 47 34 chr11 65375900 65376057 -56467799 + L1MEg LINE L1 2613 2773 -3373 6 1083 518 333 18 36 chr11 65376066 65376346 -56467510 + B4A SINE B4 3 277 -15 6 1083 263 260 13 25 chr11 65376351 65376430 -56467426 + (CATA)n Simple_repeat Simple_repeat 3 80 0 6 1083 538 264 8 0 chr11 65376468 65376597 -56467259 + RMER5 LTR ERV1 2 131 -403 6 1083 443 347 38 45 chr11 65376597 65376993 -56466863 + L1MEg LINE L1 3411 3803 -2343 6 1083 499 295 48 32 chr11 65377055 65377367 -56466489 + L1MEg LINE L1 4204 4520 -1626 6 1083 290 308 0 0 chr11 65377586 65377664 -56466192 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1083 241 252 202 10 chr11 65377680 65377784 -56466072 + L1MEg LINE L1 4668 4791 -1355 6 1083 870 211 121 0 chr11 65378000 65378190 -56465666 - B3 SINE B2 -3 213 1 6 1083 629 200 15 0 chr11 65378547 65378677 -56465179 - ORR1E LTR MaLR -224 135 4 6 1083 319 309 71 19 chr11 65379339 65379494 -56464362 + MLT1C LTR MaLR 1 163 -304 6 1083 1583 224 82 16 chr11 65380460 65380850 -56463006 + MTD LTR MaLR 1 405 -14 6 1083 1100 243 152 6 chr11 65382629 65382952 -56460904 - ORR1D2 LTR MaLR 0 370 1 6 1083 536 257 52 7 chr11 65383295 65383448 -56460408 + B3A SINE B2 1 160 -38 6 1083 444 19 0 0 chr11 65383462 65383515 -56460341 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1083 590 212 109 0 chr11 65385877 65386014 -56457842 + B3A SINE B2 1 152 -46 6 1083 414 0 0 0 chr11 65386015 65386061 -56457795 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1083 22 35 0 0 chr11 65386061 65386090 -56457766 + AT_rich Low_complexity Low_complexity 1 29 0 6 1083 252 100 0 0 chr11 65386385 65386425 -56457431 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1083 516 32 0 0 chr11 65386491 65386553 -56457303 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1083 501 216 172 23 chr11 65386712 65386840 -56457016 - B1_Mus2 SINE Alu 0 147 1 6 1083 515 292 86 23 chr11 65386983 65387158 -56456698 - B3 SINE B2 -30 186 1 6 1083 665 250 17 32 chr11 65387267 65387501 -56456355 + LTR40a LTR ERVL 18 253 -209 6 1083 231 266 248 0 chr11 65388905 65389014 -56454842 + MTE2b LTR MaLR 58 193 -186 6 1083 334 130 0 0 chr11 65391150 65391204 -56452652 + B4A SINE B4 8 61 -231 6 1083 658 333 34 37 chr11 65391378 65391699 -56452157 + RMER15 LTR ERVL 238 557 -18 6 1083 360 0 0 0 chr11 65391873 65391913 -56451943 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1083 344 325 51 6 chr11 65391915 65392073 -56451783 + L1M2 LINE L1 2155 2319 -4530 6 1083 737 172 99 179 chr11 65392074 65392386 -56451470 - RLTR25B LTR ERVK 0 1028 742 6 1083 2993 177 115 38 chr11 65392592 65393384 -56450472 - RLTR25B LTR ERVK -175 853 1 6 1083 1432 316 72 68 chr11 65393384 65393802 -56450054 + L1M2 LINE L1 1687 2069 -3811 6 1083 288 0 0 0 chr11 65393802 65393834 -56450022 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 6 1083 1519 316 72 68 chr11 65393834 65395219 -56448637 + L1M2 LINE L1 2070 3521 -2622 6 1083 2282 292 58 26 chr11 65395228 65396340 -56447516 + L1M2 LINE L1 3872 5019 -1124 6 1083 282 206 29 29 chr11 65396331 65396401 -56447455 + L1_Mur3 LINE L1 2521 2590 -3290 6 1083 1786 299 50 14 chr11 65396380 65396954 -56446902 + Lx8 LINE L1 6428 7022 -451 6 1083 477 0 0 0 chr11 65397089 65397142 -56446714 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 6 1083 386 250 8 0 chr11 65397145 65397265 -56446591 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 6 1083 21 36 0 0 chr11 65397394 65397422 -56446434 + AT_rich Low_complexity Low_complexity 1 28 0 6 1083 435 345 0 0 chr11 65397460 65397599 -56446257 + CR1_Mam LINE CR1 318 456 -1748 6 1083 369 0 0 0 chr11 65398630 65398671 -56445185 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1083 457 262 88 41 chr11 65398931 65399078 -56444778 - B3 SINE B2 -3 213 60 6 1083 1311 127 97 5 chr11 65399423 65399629 -56444227 - URR1B DNA MER1_type 0 225 1 6 1083 576 339 77 12 chr11 65400312 65400635 -56443221 - MER2 DNA MER2_type 0 345 2 6 1083 749 285 77 84 chr11 65400674 65401092 -56442764 - MTD LTR MaLR 0 419 5 6 1083 474 269 85 0 chr11 65401184 65401314 -56442542 + B3 SINE B2 66 206 -10 6 1083 393 39 0 0 chr11 65402384 65402435 -56441421 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1083 802 277 38 122 chr11 65402875 65403270 -56440586 - MTE2a LTR MaLR -17 362 1 6 1083 2722 79 44 46 chr11 65403686 65404098 -56439758 + RLTR9F LTR ERVK 1 411 -4 6 1084 401 246 29 15 chr11 65405660 65405796 -56438060 + (CAGAGA)n Simple_repeat Simple_repeat 4 141 0 6 1084 303 116 57 14 chr11 65406130 65406200 -56437656 + CT-rich Low_complexity Low_complexity 1 73 0 6 1084 270 0 0 0 chr11 65406520 65406550 -56437306 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1084 231 303 0 13 chr11 65406579 65406656 -56437200 + ID4 SINE ID 6 81 -2 6 1084 212 244 225 34 chr11 65406869 65406958 -56436898 - MIRm SINE MIR -1 275 170 6 1084 259 227 162 9 chr11 65407294 65407405 -56436451 - MLT1A1 LTR MaLR -54 354 227 6 1084 873 100 0 35 chr11 65407448 65407593 -56436263 - URR1B DNA MER1_type 0 225 86 6 1084 265 289 68 25 chr11 65407633 65407764 -56436092 - MLT1A1 LTR MaLR -263 145 1 6 1084 264 288 70 0 chr11 65408179 65408291 -56435565 + MIRm SINE MIR 4 120 -88 6 1084 5750 69 4 1 chr11 65409029 65409768 -56434088 + L1_Mus1 LINE L1 5827 6567 0 6 1084 278 258 0 0 chr11 65409953 65410019 -56433837 + MLT1C LTR MaLR 98 163 -227 6 1084 412 303 77 19 chr11 65410031 65410186 -56433670 + RSINE1 SINE B4 2 165 0 6 1084 183 184 0 0 chr11 65410190 65410228 -56433628 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1084 1306 266 53 20 chr11 65410393 65410788 -56433068 - MTD LTR MaLR 0 419 12 6 1084 345 276 58 22 chr11 65410829 65410966 -56432890 + MLT1C LTR MaLR 326 467 0 6 1084 313 350 61 17 chr11 65411048 65411228 -56432628 - LTR82B Low_complexity ERVL -8 822 635 6 1084 198 103 0 0 chr11 65411563 65411592 -56432264 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 6 1084 226 320 40 28 chr11 65411614 65411791 -56432065 + L1M2 LINE L1 3644 3822 -2321 6 1084 180 0 0 0 chr11 65411791 65411811 -56432045 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1084 360 0 0 0 chr11 65412111 65412151 -56431705 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1084 359 262 36 0 chr11 65412801 65412885 -56430971 - PB1D7 SINE Alu -33 87 1 6 1084 656 144 0 0 chr11 65413166 65413263 -56430593 + L1VL4 LINE L1 194 290 -6012 6 1084 22305 147 29 7 chr11 65413265 65415888 -56427968 + Lx LINE L1 1961 4642 -1244 6 1084 216 0 0 0 chr11 65415888 65415912 -56427944 + (CAA)n Simple_repeat Simple_repeat 2 25 0 6 1084 22305 130 27 5 chr11 65415912 65417876 -56425980 + Lx LINE L1 4643 6654 0 6 1084 524 204 17 23 chr11 65417916 65418092 -56425764 + (TATG)n Simple_repeat Simple_repeat 4 178 0 6 1084 373 235 5 43 chr11 65418111 65418298 -56425558 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1084 675 71 143 0 chr11 65418332 65418444 -56425412 + L1Md_F2 LINE L1 6455 6582 0 6 1084 216 269 0 130 chr11 65418786 65418863 -56424993 + ID2 SINE ID 15 81 -2 6 1084 274 289 40 0 chr11 65419469 65419545 -56424311 + Lx9 LINE L1 5835 5913 -1731 6 1084 518 277 0 72 chr11 65419601 65419768 -56424088 + RSINE1 SINE B4 2 156 -9 6 1084 784 159 0 14 chr11 65419917 65420057 -56423799 + B1_Mur1 SINE Alu 12 149 0 6 1084 437 278 84 17 chr11 65420122 65420301 -56423555 + ID_B1 SINE B4 34 224 0 6 1084 333 317 7 65 chr11 65420777 65420794 -56423062 + ID_B1 SINE B4 78 223 -1 6 1084 514 265 14 14 chr11 65420794 65420932 -56422924 + B1F1 SINE Alu 11 148 -1 6 1084 549 287 18 30 chr11 65421892 65422061 -56421795 + Lx7 LINE L1 7114 7280 -416 6 1084 258 105 0 0 chr11 65422586 65422624 -56421232 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1084 1246 268 121 51 chr11 65423139 65423436 -56420420 + Lx8 LINE L1 6643 6980 -493 6 1084 864 108 0 0 chr11 65423436 65423566 -56420290 + (GA)n Simple_repeat Simple_repeat 1 130 0 6 1084 1246 268 121 51 chr11 65423566 65423814 -56420042 + Lx8 LINE L1 6981 7226 -247 6 1084 1945 167 63 16 chr11 65424998 65425364 -56418492 - ORR1C2 LTR MaLR 0 384 2 6 1084 561 125 0 0 chr11 65425589 65425677 -56418179 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1084 591 321 77 37 chr11 65427583 65427829 -56416027 + MER44B DNA MER2_type 32 287 -263 6 1084 240 329 28 14 chr11 65427837 65427908 -56415948 + MER44B DNA MER2_type 472 543 -7 6 1084 295 299 121 98 chr11 65428877 65429225 -56414631 - ORR1E LTR MaLR 0 359 4 7 1084 186 167 0 0 chr11 65429798 65429834 -56414022 + (CATG)n Simple_repeat Simple_repeat 1 36 0 7 1084 1850 122 3 114 chr11 65430898 65430972 -56412884 - ORR1A4 LTR MaLR -1 328 264 7 1084 2792 61 0 0 chr11 65430972 65431346 -56412510 + L1_Mus1 LINE L1 6218 6567 0 7 1084 1850 122 3 114 chr11 65431346 65431639 -56412217 - ORR1A4 LTR MaLR -66 263 2 7 1084 770 256 63 0 chr11 65431648 65431839 -56412017 - B3 SINE B2 -13 203 1 7 1084 447 328 165 42 chr11 65432989 65434471 -56409385 + L2 LINE L2 608 2271 -1148 7 1084 419 271 86 23 chr11 65434689 65434863 -56408993 + MLT1C LTR MaLR 5 189 -278 7 1084 398 263 26 92 chr11 65434915 65435072 -56408784 + MLT1C LTR MaLR 289 466 -39 7 1084 327 212 0 0 chr11 65435132 65435217 -56408639 + (CTA)n Simple_repeat Simple_repeat 2 86 0 7 1084 21 0 0 0 chr11 65435336 65435357 -56408499 + AT_rich Low_complexity Low_complexity 1 21 0 7 1084 211 170 0 78 chr11 65436214 65436265 -56407591 + B1_Mur4 SINE Alu 99 145 -5 7 1084 759 298 46 25 chr11 65436564 65436986 -56406870 + L1MB3 LINE L1 5637 6066 -117 7 1084 513 232 13 84 chr11 65436990 65437145 -56406711 + B1F SINE Alu 6 149 0 7 1084 720 35 0 0 chr11 65437184 65437271 -56406585 + (TG)n Simple_repeat Simple_repeat 1 87 0 7 1084 422 295 23 62 chr11 65437461 65437638 -56406218 + B3 SINE B2 9 178 -38 7 1084 513 131 0 0 chr11 65437638 65437722 -56406134 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1084 1890 283 54 34 chr11 65437756 65438437 -56405419 + Lx8 LINE L1 6182 6876 -597 7 1084 351 288 25 33 chr11 65438439 65438561 -56405295 - RLTR14 LTR ERV1 0 382 262 7 1084 222 37 0 0 chr11 65438576 65438603 -56405253 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 1084 896 143 36 0 chr11 65438614 65438754 -56405102 - B1_Mur4 SINE Alu -5 145 1 7 1084 320 355 91 33 chr11 65439050 65439324 -56404532 + Lx8 LINE L1 6955 7244 -229 7 1084 447 226 130 0 chr11 65439373 65439488 -56404368 - RSINE1 SINE B4 -22 143 14 7 1084 1034 174 63 5 chr11 65439695 65439886 -56403970 + MTC LTR MaLR 1 202 -219 7 1084 910 28 0 27 chr11 65439895 65440005 -56403851 + U6 snRNA snRNA 1 107 0 7 1084 2163 32 0 0 chr11 65440005 65440257 -56403599 + L1Md_A LINE L1 6331 6582 0 7 1084 5074 75 29 1 chr11 65440270 65440933 -56402923 + L1_Mus2 LINE L1 5886 6566 0 7 1084 1240 156 28 0 chr11 65440957 65441169 -56402687 + MTC LTR MaLR 196 413 -8 7 1084 21 57 0 0 chr11 65441245 65441280 -56402576 + AT_rich Low_complexity Low_complexity 1 35 0 7 1084 207 162 0 0 chr11 65441307 65441344 -56402512 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 1084 224 222 55 11 chr11 65441361 65441452 -56402404 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 7 1084 236 0 0 83 chr11 65441896 65441944 -56401912 + (CACCC)n Simple_repeat Simple_repeat 5 48 0 7 1084 272 303 105 8 chr11 65442516 65442649 -56401207 - MIRb SINE MIR -18 250 101 7 1084 243 0 0 0 chr11 65442722 65442749 -56401107 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 7 1084 419 0 20 0 chr11 65442768 65442819 -56401037 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1084 405 0 0 0 chr11 65443250 65443295 -56400561 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1084 223 253 184 46 chr11 65443376 65443463 -56400393 - B1F1 SINE Alu -46 103 5 7 1084 1158 272 110 38 chr11 65443497 65444362 -56399494 + L1_Rod LINE L1 4815 5796 -501 7 1084 234 211 34 34 chr11 65446398 65446457 -56397399 + ID4 SINE ID 2 60 -23 7 1084 385 293 17 28 chr11 65446489 65446668 -56397188 + GA-rich Low_complexity Low_complexity 3 179 0 7 1084 669 164 0 0 chr11 65446678 65446788 -56397068 + B1_Mur4 SINE Alu 9 118 -32 7 1084 355 319 185 4 chr11 65447851 65448100 -56395756 + MLT1H1 LTR MaLR 201 494 -61 7 1084 416 311 89 19 chr11 65448123 65448382 -56395474 + MER44A DNA MER2_type 10 286 -53 7 1084 552 301 7 0 chr11 65449748 65449894 -56393962 - RSINE1 SINE B4 -17 148 2 7 1084 475 259 0 36 chr11 65450002 65450114 -56393742 + PB1D10 SINE Alu 1 108 -9 7 1084 391 275 48 134 chr11 65450364 65450520 -56393336 + B4A SINE B4 82 231 -61 7 1084 787 221 0 0 chr11 65450520 65450669 -56393187 + B1_Mur4 SINE Alu 2 150 0 7 1084 391 275 48 134 chr11 65450669 65450743 -56393113 + B4A SINE B4 232 292 0 7 1084 447 87 0 0 chr11 65450825 65450894 -56392962 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1084 778 278 44 4 chr11 65451143 65451392 -56392464 + MER74A LTR ERVL 6 264 -294 7 1084 620 238 114 17 chr11 65451403 65451578 -56392278 + MTD LTR MaLR 214 405 -14 7 1084 310 341 18 0 chr11 65452078 65452248 -56391608 + (TGG)n Simple_repeat Simple_repeat 3 175 0 7 1084 425 257 22 39 chr11 65452250 65452432 -56391424 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 7 1084 235 271 47 12 chr11 65452930 65453016 -56390840 - B1F1 SINE Alu -58 91 3 7 1084 336 292 206 7 chr11 65453337 65453492 -56390364 + B3A SINE B2 2 187 -11 7 1084 496 84 0 12 chr11 65455780 65455864 -56387992 - L1Md_F2 LINE L1 -4 6578 6496 7 1084 807 86 26 0 chr11 65455864 65455981 -56387875 + L1Md_F2 LINE L1 5860 5979 -603 7 1084 221 217 45 91 chr11 65456388 65456454 -56387402 + ID4_ SINE ID 5 67 -16 7 1084 249 272 130 46 chr11 65456501 65456609 -56387247 + MIRc SINE MIR 51 167 -101 7 1084 402 21 0 0 chr11 65457605 65457652 -56386204 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 7 1084 351 0 0 0 chr11 65457767 65457806 -56386050 + (TAA)n Simple_repeat Simple_repeat 2 40 0 7 1084 315 0 0 0 chr11 65458551 65458586 -56385270 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1084 759 105 23 0 chr11 65458827 65458960 -56384896 + (TC)n Simple_repeat Simple_repeat 1 136 0 7 1084 618 253 25 30 chr11 65459284 65459484 -56384372 - MIR SINE MIR -3 259 61 7 1084 318 132 0 0 chr11 65459574 65459627 -56384229 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 7 1084 332 289 0 0 chr11 65460343 65460433 -56383423 + MER53 DNA hAT 7 96 -97 7 1084 208 233 0 52 chr11 65460762 65460839 -56383017 + (CACCAT)n Simple_repeat Simple_repeat 4 76 0 7 1084 745 272 82 29 chr11 65461120 65461461 -56382395 - ORR1E LTR MaLR 0 359 1 7 1084 269 201 27 34 chr11 65462646 65462795 -56381061 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 7 1084 1045 84 6 6 chr11 65462810 65462978 -56380878 + (TAGA)n Simple_repeat Simple_repeat 3 170 0 7 1084 1065 214 110 8 chr11 65462995 65463240 -56380616 - MTC LTR MaLR -8 413 144 7 1084 993 270 96 26 chr11 65463841 65464267 -56379589 + L1MA9 LINE L1 5698 6153 -159 7 1084 499 176 49 0 chr11 65464641 65464743 -56379113 + B1F SINE Alu 32 138 -11 7 1084 243 254 0 17 chr11 65464743 65464803 -56379053 + GA-rich Low_complexity Low_complexity 2 60 0 7 1084 743 296 104 10 chr11 65465271 65465661 -56378195 + L1MA5A LINE L1 5655 6151 -146 7 1084 489 299 109 21 chr11 65465693 65465977 -56377879 + Lx8 LINE L1 7156 7464 -9 7 1084 325 331 58 29 chr11 65466024 65466195 -56377661 - MLT1I LTR MaLR 0 411 236 7 1084 372 279 13 79 chr11 65466600 65466622 -56377234 + ID_B1 SINE B4 76 217 -7 7 1084 678 208 0 0 chr11 65466622 65466752 -56377104 + B1_Mur4 SINE Alu 14 143 -7 7 1084 228 100 0 0 chr11 65466753 65466793 -56377063 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1084 189 250 179 0 chr11 65467285 65467369 -56376487 - MIR3 SINE MIR -1 207 109 7 1084 1933 228 24 24 chr11 65468839 65469257 -56374599 + Lx5 LINE L1 6632 7049 -1 7 1084 482 187 0 11 chr11 65469896 65469988 -56373868 - B3 SINE B2 -125 91 1 7 1084 248 369 68 0 chr11 65470007 65470110 -56373746 - MIR3 SINE MIR -13 195 86 7 1084 627 311 105 15 chr11 65470811 65471154 -56372702 + MLT1C LTR MaLR 53 426 -41 7 1084 1179 247 18 4 chr11 65471171 65471451 -56372405 - RMER15 LTR ERVL 0 575 292 7 1084 2791 32 76 6 chr11 65471577 65471918 -56371938 - RLTR10B2 LTR ERVK 0 365 1 7 1084 4052 115 8 13 chr11 65471918 65472614 -56371242 - IAPEY3-int LTR ERVK 0 7680 6965 7 1084 1600 99 99 0 chr11 65472614 65472846 -56371010 - IAP-d-int LTR ERVK -1287 5255 5001 7 1084 492 305 16 16 chr11 65472868 65473058 -56370798 - IAP-d-int LTR ERVK -5531 1011 822 7 1084 2924 50 0 0 chr11 65473198 65473539 -56370317 - RLTR10-int LTR ERVK -995 992 652 7 1084 376 67 0 0 chr11 65473542 65473587 -56370269 - RLTR10-int LTR ERVK -6405 137 93 7 1084 597 73 42 42 chr11 65473587 65473729 -56370127 + CT-rich Low_complexity Low_complexity 3 144 0 7 1084 1332 68 6 6 chr11 65473826 65474004 -56369852 - RLTR10-int LTR ERVK -7403 178 1 7 1084 3238 22 3 0 chr11 65474004 65474368 -56369488 - RLTR10B2 LTR ERVK 0 365 1 7 1084 472 265 16 37 chr11 65474872 65475202 -56368654 + GA-rich Low_complexity Low_complexity 1 322 0 7 1084 265 344 55 14 chr11 65476651 65476869 -56366987 - Kanga1a DNA Tc2 -266 488 262 7 1084 289 279 70 0 chr11 65477202 65477288 -56366568 - PB1D7 SINE Alu -8 112 21 7 1084 1013 163 59 50 chr11 65478573 65478793 -56365063 + URR1B DNA MER1_type 3 224 -1 7 1084 622 311 0 12 chr11 65479040 65479206 -56364650 + RSINE1 SINE B4 2 165 0 7 1084 2126 117 9 3 chr11 65479377 65479711 -56364145 + ORR1C1 LTR MaLR 42 377 -1 7 1084 566 270 21 63 chr11 65479745 65479935 -56363921 + B3A SINE B2 17 198 0 7 1084 265 265 0 0 chr11 65480009 65480077 -56363779 + PB1D10 SINE Alu 48 115 -2 7 1084 261 139 0 0 chr11 65480077 65480120 -56363736 + (GGA)n Simple_repeat Simple_repeat 1 43 0 7 1084 25 31 0 0 chr11 65480158 65480190 -56363666 + AT_rich Low_complexity Low_complexity 1 32 0 7 1084 225 346 10 0 chr11 65480228 65480329 -56363527 + L1MD LINE L1 4843 4944 -1202 7 1084 406 266 51 58 chr11 65480381 65480594 -56363262 - L1ME2 LINE L1 -125 6039 5828 7 1084 2249 67 10 3 chr11 65481415 65481713 -56362143 - L1_Mus3 LINE L1 -3 6635 6336 7 1084 579 311 107 15 chr11 65482198 65482459 -56361397 + MER2 DNA MER2_type 60 344 -1 7 1084 465 19 0 0 chr11 65482749 65482803 -56361053 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1084 237 263 37 92 chr11 65483193 65483302 -56360554 + LTR78 LTR ERV1 859 961 -343 7 1084 297 0 0 0 chr11 65483343 65483376 -56360480 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1084 1172 164 69 4 chr11 65483422 65483654 -56360202 - MTC LTR MaLR -170 251 5 8 1084 707 319 45 41 chr11 65484327 65484618 -56359238 + Tigger7 DNA MER2_type 52 343 -2148 8 1084 437 186 188 31 chr11 65484703 65484831 -56359025 + B3A SINE B2 1 148 -50 8 1084 459 0 0 0 chr11 65484831 65484882 -56358974 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1084 263 242 30 0 chr11 65486281 65486347 -56357509 - MER5A1 DNA MER1_type -56 110 43 8 1084 22 0 0 0 chr11 65486965 65486987 -56356869 + AT_rich Low_complexity Low_complexity 1 22 0 8 1084 644 36 0 12 chr11 65487139 65487223 -56356633 + (GGGGA)n Simple_repeat Simple_repeat 5 87 0 8 1084 1225 83 0 11 chr11 65487242 65487424 -56356432 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 8 1084 186 43 0 0 chr11 65487905 65487928 -56355928 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1084 577 213 92 58 chr11 65487956 65488130 -56355726 + B3A SINE B2 3 182 -16 8 1084 465 103 0 0 chr11 65488132 65488200 -56355656 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 1084 280 335 76 34 chr11 65488205 65488443 -56355413 + L1M4b LINE L1 148 395 -6939 8 1084 1123 236 99 24 chr11 65489596 65489930 -56353926 - MTEa LTR MaLR -18 361 3 8 1084 316 229 0 46 chr11 65491162 65491249 -56352607 - ID2 SINE ID 0 83 1 8 1084 326 247 0 43 chr11 65491683 65491869 -56351987 + (TATG)n Simple_repeat Simple_repeat 2 179 0 8 1084 2409 36 0 0 chr11 65492053 65492333 -56351523 + L1Md_A LINE L1 6303 6582 0 8 1084 637 229 159 35 chr11 65493057 65493347 -56350509 + L1M2 LINE L1 5421 5746 -554 8 1084 709 90 0 0 chr11 65493498 65493598 -56350258 - B2_Mm2 SINE B2 -93 102 3 8 1084 924 273 85 17 chr11 65494005 65494359 -56349497 - L1MB2 LINE L1 -63 6108 5731 8 1084 1127 265 17 17 chr11 65494476 65494772 -56349084 + ORR1D2 LTR MaLR 5 300 -70 8 1084 222 167 0 36 chr11 65494773 65494829 -56349027 - PB1D7 SINE Alu -61 59 6 8 1084 23 0 0 0 chr11 65495064 65495087 -56348769 + AT_rich Low_complexity Low_complexity 1 23 0 8 1084 548 244 0 0 chr11 65495171 65495286 -56348570 - B3A SINE B2 -81 117 3 8 1084 538 242 245 12 chr11 65495296 65495687 -56348169 - L1MB2 LINE L1 -893 5253 4758 8 1084 562 268 24 35 chr11 65495772 65495942 -56347914 - B3 SINE B2 -41 175 8 8 1084 847 174 202 0 chr11 65495993 65496171 -56347685 + B3 SINE B2 3 216 0 8 1084 1251 91 39 11 chr11 65496176 65496354 -56347502 + B2_Mm2 SINE B2 2 184 -11 8 1084 267 53 0 0 chr11 65496390 65496428 -56347428 + B2_Mm2 SINE B2 64 101 -94 8 1084 180 0 0 0 chr11 65496447 65496467 -56347389 + (CATTA)n Simple_repeat Simple_repeat 4 23 0 8 1084 318 67 0 0 chr11 65496467 65496512 -56347344 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 8 1084 430 216 11 0 chr11 65496737 65496825 -56347031 + B1_Mur3 SINE Alu 3 91 -58 8 1084 378 268 10 49 chr11 65496826 65496928 -56346928 - RSINE1 SINE B4 -65 100 3 8 1084 390 263 51 0 chr11 65497141 65497259 -56346597 - ID_B1 SINE B4 -4 220 97 8 1084 259 273 54 27 chr11 65498501 65498648 -56345208 + L1M4b LINE L1 3047 3197 -4137 8 1084 386 272 92 29 chr11 65498636 65498900 -56344956 + L1M4b LINE L1 5029 5306 -1700 8 1084 233 335 64 6 chr11 65499160 65499331 -56344525 + L1M4b LINE L1 5719 5899 -1107 8 1084 180 0 0 0 chr11 65499492 65499512 -56344344 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 8 1084 352 206 0 0 chr11 65499599 65499672 -56344184 - PB1D10 SINE Alu -12 105 33 8 1084 303 271 0 28 chr11 65499714 65499786 -56344070 - B4A SINE B4 0 292 223 8 1084 180 0 0 0 chr11 65499833 65499853 -56344003 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 8 1084 226 378 101 0 chr11 65499863 65499982 -56343874 - B4A SINE B4 -92 200 70 8 1084 348 194 53 53 chr11 65500001 65500077 -56343779 - B4A SINE B4 -211 81 6 1 1084 590 216 96 15 chr11 65500777 65500913 -56342943 - RSINE1 SINE B4 -15 150 4 2 1084 185 343 97 35 chr11 65500951 65501096 -56342760 + MIRc SINE MIR 53 206 -62 3 1084 385 225 42 0 chr11 65505348 65505419 -56338437 + ID_B1 SINE B4 134 207 -17 4 1084 492 288 45 91 chr11 65505632 65505918 -56337938 + B4 SINE B4 2 274 -18 5 1084 422 254 32 63 chr11 65506238 65506364 -56337492 - B4A SINE B4 -169 123 2 6 1084 387 60 0 0 chr11 65508370 65508420 -56335436 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1084 673 287 9 101 chr11 65508430 65508647 -56335209 - B4 SINE B4 -18 274 78 8 1084 992 49 0 0 chr11 65509014 65509137 -56334719 + B1_Mus1 SINE Alu 22 144 -4 9 1084 207 100 0 0 chr11 65509140 65509170 -56334686 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1084 381 240 38 19 chr11 65509514 65509620 -56334236 + MLT1A LTR MaLR 267 374 0 1 1084 2136 102 123 11 chr11 65510058 65510423 -56333433 + MTC LTR MaLR 16 421 0 1 1084 452 286 21 136 chr11 65511326 65511658 -56332198 + L1M4 LINE L1 2903 3196 -2950 1 1084 392 318 48 62 chr11 65511802 65512094 -56331762 + Lx8 LINE L1 7147 7434 -39 1 1084 460 317 14 0 chr11 65512231 65512373 -56331483 + B1F SINE Alu 1 144 -5 1 1084 384 22 0 0 chr11 65512507 65512552 -56331304 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 1 1084 197 132 26 0 chr11 65512554 65512592 -56331264 + GA-rich Low_complexity Low_complexity 2 40 0 1 1084 747 206 0 29 chr11 65513263 65513403 -56330453 - B1_Mur2 SINE Alu 0 149 14 1 1084 544 246 16 24 chr11 65513881 65514006 -56329850 - B3A SINE B2 -73 125 2 1 1084 1259 109 22 0 chr11 65514063 65514246 -56329610 + B2_Mm2 SINE B2 1 187 -8 2 1084 2085 200 95 14 chr11 65514501 65514994 -56328862 + RMER16 LTR ERVK 1 533 0 2 1084 5704 69 55 18 chr11 65515865 65517390 -56326466 + L1VL2 LINE L1 177 1765 -1850 2 1084 972 66 0 26 chr11 65517403 65517559 -56326297 + L1VL2 LINE L1 2832 2983 -632 2 1084 30 27 0 0 chr11 65518124 65518161 -56325695 + AT_rich Low_complexity Low_complexity 1 37 0 2 1084 270 0 0 0 chr11 65518922 65518952 -56324904 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1084 1059 38 76 0 chr11 65519018 65519149 -56324707 + B1_Mus1 SINE Alu 2 142 -6 2 1084 267 31 0 0 chr11 65519151 65519183 -56324673 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 2 1084 583 267 22 29 chr11 65519502 65519641 -56324215 + RSINE1 SINE B4 8 145 -20 2 1084 537 246 8 8 chr11 65520785 65520904 -56322952 + PB1D7 SINE Alu 2 120 0 2 1084 544 272 32 65 chr11 65521241 65521426 -56322430 - B3A SINE B2 -6 192 14 2 1084 221 299 39 13 chr11 65521359 65521437 -56322419 - B4A SINE B4 -211 81 2 3 1084 414 219 0 24 chr11 65522148 65522232 -56321624 + ID4 SINE ID 1 82 -1 3 1084 1087 76 7 0 chr11 65522666 65522811 -56321045 - B1_Mm SINE Alu 0 147 2 3 1084 2591 167 93 33 chr11 65522862 65523401 -56320455 + RMER4B LTR ERVK 15 585 0 3 1084 209 245 0 56 chr11 65524151 65524259 -56319597 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1084 319 254 124 38 chr11 65526045 65526209 -56317647 - B3 SINE B2 0 195 1 3 1084 4163 135 112 68 chr11 65526484 65527345 -56316511 + RMER21A LTR ERV1 39 936 -11 3 1084 420 301 22 98 chr11 65527554 65527738 -56316118 + Tigger7 DNA MER2_type 131 300 -2191 3 1084 449 290 65 16 chr11 65527747 65527933 -56315923 + Tigger7 DNA MER2_type 2297 2491 0 3 1084 357 276 59 25 chr11 65528587 65528775 -56315081 + L1_Rod LINE L1 3471 3681 -2462 3 1084 1069 228 203 20 chr11 65528875 65529180 -56314676 - ORR1D2 LTR MaLR -2 368 8 3 1084 659 289 99 0 chr11 65529211 65529533 -56314323 + L1_Rod LINE L1 3868 4221 -1922 3 1084 619 232 0 31 chr11 65529543 65529672 -56314184 - B1_Mus2 SINE Alu -22 125 1 4 1084 850 55 0 0 chr11 65529705 65529814 -56314042 + B1_Mus1 SINE Alu 29 137 -11 4 1084 249 33 0 0 chr11 65529814 65529844 -56314012 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1084 1891 176 41 28 chr11 65529902 65530264 -56313592 + ORR1D1 LTR MaLR 8 374 0 4 1084 599 301 75 93 chr11 65530337 65530563 -56313293 + L1_Rod LINE L1 4358 4593 -1550 3 1084 1769 155 106 53 chr11 65530563 65530959 -56312897 + MTC LTR MaLR 5 421 0 4 1084 856 290 99 60 chr11 65530959 65532242 -56311614 + L1_Rod LINE L1 4594 5847 0 3 1084 22 0 0 0 chr11 65534670 65534692 -56309164 + AT_rich Low_complexity Low_complexity 1 22 0 4 1084 21 57 0 0 chr11 65534994 65535029 -56308827 + AT_rich Low_complexity Low_complexity 1 35 0 4 135 967 49 0 0 chr11 65535941 65536063 -56307793 + L1Md_F2 LINE L1 5465 5586 -297 4 1085 8141 40 4 2 chr11 65536063 65537056 -56306800 + L1Md_F2 LINE L1 5587 6581 -1 4 1085 1931 138 96 41 chr11 65538260 65538624 -56305232 + ORR1C2 LTR MaLR 1 384 0 4 1085 249 252 16 0 chr11 65539956 65540084 -56303772 + GA-rich Low_complexity Low_complexity 1 130 0 4 1085 266 300 28 14 chr11 65541356 65541427 -56302429 - ID4_ SINE ID -11 72 1 5 1085 180 0 0 0 chr11 65541525 65541545 -56302311 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1085 798 283 75 26 chr11 65542140 65542448 -56301408 + RMER15 LTR ERVL 251 573 -2 5 1085 308 270 27 0 chr11 65542830 65542904 -56300952 - RSINE1 SINE B4 -87 78 3 5 1085 2260 253 35 58 chr11 65543164 65543924 -56299932 + RMER15-int LTR ERVL 4147 4889 -110 5 1085 309 312 191 19 chr11 65544165 65544374 -56299482 + RMER15 LTR ERVL 285 529 -46 5 1085 411 21 0 0 chr11 65545679 65545727 -56298129 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1085 324 0 0 0 chr11 65545727 65545762 -56298094 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1085 24 0 0 0 chr11 65545802 65545826 -56298030 + AT_rich Low_complexity Low_complexity 1 24 0 5 1085 23 0 0 0 chr11 65546964 65546987 -56296869 + AT_rich Low_complexity Low_complexity 1 23 0 5 1085 226 331 72 14 chr11 65549237 65549375 -56294481 + MER5B DNA MER1_type 6 151 -27 5 1085 1553 191 52 91 chr11 65551102 65551488 -56292368 + ORR1D1 LTR MaLR 4 374 0 6 1085 517 294 12 59 chr11 65551551 65551721 -56292135 + RSINE1 SINE B4 4 165 0 6 1085 289 75 48 48 chr11 65551863 65551947 -56291909 + A-rich Low_complexity Low_complexity 1 84 0 6 1085 767 301 81 55 chr11 65552139 65552487 -56291369 + MLT1B LTR MaLR 1 357 -33 6 1085 230 238 73 24 chr11 65553501 65553583 -56290273 - MamRep1879 DNA hAT? -98 118 33 6 1085 225 276 171 0 chr11 65553887 65553963 -56289893 - PB1D10 SINE Alu -6 111 23 6 1085 459 0 0 0 chr11 65553964 65554015 -56289841 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1085 1338 131 42 5 chr11 65554162 65554377 -56289479 + URR1B DNA MER1_type 2 224 -1 6 1085 967 236 10 5 chr11 65554689 65554898 -56288958 - B3 SINE B2 -6 210 1 6 1085 439 330 154 0 chr11 65555111 65555332 -56288524 + L1MEc LINE L1 102 356 -6044 6 1085 234 0 0 0 chr11 65555678 65555704 -56288152 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 7 1085 263 227 64 39 chr11 65555831 65555909 -56287947 + PB1D10 SINE Alu 32 111 -6 7 1085 2476 146 53 23 chr11 65557409 65557880 -56285976 + RMER1B Other Other 580 1064 -2 7 1085 360 174 154 55 chr11 65557949 65558040 -56285816 + B1F2 SINE Alu 50 149 0 7 1085 418 298 132 23 chr11 65558116 65558336 -56285520 + MLT1C LTR MaLR 188 431 -36 7 1085 243 220 85 0 chr11 65558367 65558426 -56285430 - MER58B DNA MER1_type -10 331 268 7 1085 23 0 0 0 chr11 65558595 65558618 -56285238 + AT_rich Low_complexity Low_complexity 1 23 0 7 1085 360 0 0 0 chr11 65559193 65559233 -56284623 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1085 192 202 84 116 chr11 65559241 65559336 -56284520 - L3 LINE CR1 -4396 93 2 7 1085 313 308 28 117 chr11 65560253 65560433 -56283423 + MTEb LTR MaLR 200 363 -16 7 1085 540 0 0 0 chr11 65560484 65560544 -56283312 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 8 1085 906 172 7 0 chr11 65560664 65560809 -56283047 - B1_Mur2 SINE Alu -2 147 2 8 1085 393 255 10 20 chr11 65560914 65561014 -56282842 - PB1 SINE Alu -3 124 26 8 1085 769 259 28 7 chr11 65561206 65561400 -56282456 + B3A SINE B2 16 216 0 8 1085 249 253 200 33 chr11 65561888 65562133 -56281723 - L1ME2 LINE L1 -141 6023 5738 8 1085 336 24 0 0 chr11 65562135 65562176 -56281680 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 8 1085 321 277 143 12 chr11 65562261 65562657 -56281199 - L1ME2 LINE L1 -765 5594 5133 8 1085 341 86 17 0 chr11 65563078 65563136 -56280720 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1085 403 281 150 37 chr11 65563331 65563604 -56280252 - L1ME2 LINE L1 -1632 4514 4211 8 1085 315 296 99 31 chr11 65563662 65563885 -56279971 - L1ME2 LINE L1 -2057 4089 3852 8 1085 347 249 57 18 chr11 65563927 65564098 -56279758 - L1ME2 LINE L1 -2407 3739 3563 8 1085 736 294 31 84 chr11 65564560 65564880 -56278976 - ORR1E LTR MaLR -55 304 2 8 1085 369 62 0 0 chr11 65566454 65566502 -56277354 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1085 611 199 21 0 chr11 65566502 65566643 -56277213 + (CATATA)n Simple_repeat Simple_repeat 4 147 0 8 1085 359 269 21 31 chr11 65567348 65567444 -56276412 + B1F SINE Alu 3 97 -20 9 1085 885 238 58 0 chr11 65567698 65567887 -56275969 - B3 SINE B2 -16 200 1 9 1085 329 165 347 0 chr11 65568647 65568768 -56275088 - Lx5 LINE L1 -29 7021 6859 9 1085 23 0 0 0 chr11 65569929 65569952 -56273904 + AT_rich Low_complexity Low_complexity 1 23 0 9 1085 195 167 0 0 chr11 65570636 65570678 -56273178 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 9 1085 3445 25 2 0 chr11 65570824 65571219 -56272637 + MTA_Mm LTR MaLR 1 396 0 9 1085 280 351 25 58 chr11 65571689 65571810 -56272046 - PB1D10 SINE Alu 0 117 1 9 1085 353 315 0 52 chr11 65571714 65571811 -56272045 - ID_B1 SINE B4 -52 172 81 9 1085 8342 184 77 46 chr11 65571845 65572833 -56271023 + Lx7 LINE L1 5151 6167 -1529 9 1085 315 0 0 0 chr11 65572833 65572868 -56270988 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1085 8342 204 67 20 chr11 65572868 65574324 -56269532 + Lx7 LINE L1 6168 7695 -1 9 1085 225 308 99 78 chr11 65574339 65574480 -56269376 - MT2B LTR ERVL -275 326 183 1 1085 465 248 122 16 chr11 65574370 65574493 -56269363 - B1F2 SINE Alu -12 137 2 1 1085 287 269 124 9 chr11 65574544 65574649 -56269207 + B1F SINE Alu 5 121 -28 1 1085 243 0 0 0 chr11 65574651 65574678 -56269178 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1085 321 247 132 13 chr11 65575052 65575204 -56268652 + MLT1D-int LTR MaLR 1142 1311 -60 1 1085 351 252 70 10 chr11 65575237 65575337 -56268519 + MLT1D LTR MaLR 1 106 -399 1 1085 1206 48 0 20 chr11 65575673 65575823 -56268033 + B1_Mus1 SINE Alu 2 148 0 1 1085 213 65 0 0 chr11 65575825 65575856 -56268000 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1085 281 155 0 17 chr11 65576381 65576440 -56267416 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1085 980 107 272 0 chr11 65576543 65576712 -56267144 + B3 SINE B2 2 216 0 1 1085 478 262 73 85 chr11 65577976 65578206 -56265650 + B4A SINE B4 14 284 -8 1 1085 288 261 83 42 chr11 65578978 65579074 -56264782 + MTEa LTR MaLR 272 371 -8 1 1085 338 309 175 0 chr11 65579544 65579641 -56264215 + RSINE1 SINE B4 28 141 -24 1 1085 198 0 0 0 chr11 65579668 65579690 -56264166 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1085 783 299 75 0 chr11 65579767 65580035 -56263821 + B4 SINE B4 3 290 -2 1 1085 257 318 0 15 chr11 65580405 65580472 -56263384 - ID4 SINE ID -4 79 14 1 1085 4742 47 2 21 chr11 65580551 65581167 -56262689 - L1Md_F2 LINE L1 0 6582 5979 1 1085 1369 199 82 95 chr11 65581840 65582229 -56261627 - ORR1C2 LTR MaLR 0 384 1 1 1085 204 25 100 0 chr11 65582771 65582811 -56261045 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1085 198 0 0 0 chr11 65583922 65583944 -56259912 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1085 1181 54 0 13 chr11 65583944 65584094 -56259762 - B1_Mus1 SINE Alu 0 148 1 1 1085 183 42 0 0 chr11 65584115 65584139 -56259717 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1085 791 230 27 59 chr11 65584159 65584381 -56259475 + B3 SINE B2 2 216 0 1 1085 296 221 83 83 chr11 65584642 65584726 -56259130 + B4A SINE B4 90 173 -119 1 1085 443 169 21 63 chr11 65584651 65584746 -56259110 + PB1D10 SINE Alu 11 101 -16 1 1085 1162 50 0 56 chr11 65584748 65584981 -56258875 + (GAAAA)n Simple_repeat Simple_repeat 1 220 0 1 1085 229 351 13 39 chr11 65585179 65585256 -56258600 + B1F1 SINE Alu 17 91 -58 1 1085 219 146 0 0 chr11 65585635 65585676 -56258180 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1085 23 54 0 0 chr11 65586028 65586065 -56257791 + AT_rich Low_complexity Low_complexity 1 37 0 1 1085 397 291 18 9 chr11 65586938 65587049 -56256807 + PB1 SINE Alu 5 116 -11 1 1085 270 0 0 0 chr11 65587070 65587100 -56256756 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 1 1085 181 283 19 0 chr11 65587278 65587331 -56256525 + L2c LINE L2 3278 3331 -56 1 1085 853 49 187 0 chr11 65588178 65588301 -56255555 + B1_Mus2 SINE Alu 2 147 0 1 1085 37 90 0 0 chr11 65588425 65588525 -56255331 + AT_rich Low_complexity Low_complexity 1 100 0 1 1085 327 49 0 0 chr11 65588558 65588599 -56255257 + (ACTG)n Simple_repeat Simple_repeat 1 41 0 1 1085 336 282 35 0 chr11 65590077 65590162 -56253694 + PB1D10 SINE Alu 23 110 -7 1 1085 267 103 0 0 chr11 65590910 65590949 -56252907 + (GGA)n Simple_repeat Simple_repeat 1 39 0 1 1085 180 77 0 0 chr11 65590950 65590976 -56252880 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1 1085 647 201 13 80 chr11 65591010 65591161 -56252695 + B1_Mur1 SINE Alu 9 149 0 1 1085 251 276 13 0 chr11 65593615 65593691 -56250165 + ID4_ SINE ID 5 81 -2 1 1085 347 283 85 0 chr11 65593864 65593970 -56249886 + MER21B LTR ERV1 376 490 -373 1 1085 994 175 73 24 chr11 65594338 65594543 -56249313 + B3 SINE B2 1 215 -1 1 1085 1311 228 117 26 chr11 65595129 65595472 -56248384 + MTE2a LTR MaLR 1 374 -5 1 1085 466 355 23 29 chr11 65595462 65595633 -56248223 + B4A SINE B4 27 196 -96 1 1085 468 62 0 0 chr11 65595658 65595722 -56248134 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1085 829 74 0 16 chr11 65595862 65595986 -56247870 + (GA)n Simple_repeat Simple_repeat 1 122 0 1 1085 696 277 40 20 chr11 65595991 65596190 -56247666 - ID_B1 SINE B4 -21 203 1 1 1085 1035 270 109 4 chr11 65596807 65597064 -56246792 - B4A SINE B4 -8 284 1 1 1085 257 349 129 27 chr11 65597164 65597388 -56246468 - MIRc SINE MIR -5 263 17 1 1085 216 317 239 0 chr11 65598522 65598662 -56245194 - MIRb SINE MIR -2 260 92 1 1085 1423 55 33 5 chr11 65599007 65599191 -56244665 + B2_Mm2 SINE B2 2 190 -5 1 1085 838 234 31 21 chr11 65599462 65599654 -56244202 + B3 SINE B2 1 194 -22 1 1085 195 42 0 0 chr11 65600240 65600264 -56243592 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1085 442 179 77 0 chr11 65600312 65600390 -56243466 - RSINE1 SINE B4 -37 128 45 1 1085 26 50 0 0 chr11 65601311 65601351 -56242505 + GC_rich Low_complexity Low_complexity 1 40 0 1 1085 23 68 0 0 chr11 65601683 65601727 -56242129 + GC_rich Low_complexity Low_complexity 1 44 0 1 1085 396 280 113 10 chr11 65602482 65602590 -56241266 + B1_Mur3 SINE Alu 1 109 -8 1 1085 25 0 0 0 chr11 65602701 65602726 -56241130 + AT_rich Low_complexity Low_complexity 1 25 0 1 1085 349 357 8 42 chr11 65602938 65603058 -56240798 + MamRep488 DNA hAT 6 121 -98 1 1085 270 135 52 39 chr11 65603109 65603263 -56240593 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 1 1085 225 111 28 0 chr11 65603266 65603302 -56240554 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1085 720 236 163 41 chr11 65603775 65604119 -56239737 + MLT1B LTR MaLR 1 386 -4 1 1085 859 240 59 0 chr11 65604507 65604711 -56239145 + B3 SINE B2 1 216 0 1 1085 356 267 63 1 chr11 65604728 65604851 -56239005 + LTR84a LTR ERVL 280 413 -348 1 1085 993 175 0 0 chr11 65604855 65605114 -56238742 + (CCA)n Simple_repeat Simple_repeat 1 259 0 1 1085 393 252 28 46 chr11 65605681 65605789 -56238067 + PB1D10 SINE Alu 2 107 -10 1 1085 195 220 0 0 chr11 65605843 65605893 -56237963 + GA-rich Low_complexity Low_complexity 4 53 0 1 1085 408 152 63 0 chr11 65605942 65606021 -56237835 + PB1D10 SINE Alu 29 112 -5 1 1085 857 60 0 8 chr11 65606038 65606155 -56237701 + (GGGGA)n Simple_repeat Simple_repeat 4 119 0 1 1085 272 233 97 0 chr11 65606318 65606421 -56237435 + L1ME2z LINE L1 6111 6223 -221 1 1085 226 348 0 0 chr11 65606938 65607007 -56236849 - B1F SINE Alu -77 72 4 1 1085 601 312 11 23 chr11 65607008 65607185 -56236671 + MTEa LTR MaLR 1 175 -204 1 1085 763 205 0 8 chr11 65607197 65607325 -56236531 + B3 SINE B2 5 131 -85 1 1085 271 0 0 49 chr11 65607358 65607399 -56236457 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 1085 683 172 106 25 chr11 65607419 65607580 -56236276 + MTEa LTR MaLR 194 367 -12 1 1085 360 224 16 41 chr11 65607644 65607765 -56236091 - L1MB8 LINE L1 -32 6146 6029 1 1085 1487 228 92 3 chr11 65607811 65608168 -56235688 + MTD LTR MaLR 25 413 -6 1 1085 558 311 27 12 chr11 65608246 65608600 -56235256 - L1MB8 LINE L1 -347 5821 5459 1 1085 216 0 0 0 chr11 65608671 65608695 -56235161 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1085 248 312 26 43 chr11 65609087 65609204 -56234652 - PB1D7 SINE Alu -5 115 1 1 1085 21 89 0 0 chr11 65609213 65609269 -56234587 + AT_rich Low_complexity Low_complexity 1 56 0 1 1085 237 338 0 110 chr11 65609497 65609603 -56234253 - B4A SINE B4 -68 224 127 1 1085 1145 213 213 85 chr11 65609603 65610111 -56233745 + RMER15 LTR ERVL 1 573 -2 1 1085 615 238 7 53 chr11 65610111 65610152 -56233704 - B1_Mur1 SINE Alu -108 41 6 1 1085 237 338 0 110 chr11 65610152 65610177 -56233679 - B4A SINE B4 -166 126 71 1 1085 234 400 9 0 chr11 65610193 65610298 -56233558 - PB1D9 SINE Alu -14 106 1 1 1085 238 316 0 60 chr11 65610445 65610529 -56233327 + ID2 SINE ID 5 83 0 1 1085 327 228 0 92 chr11 65610643 65610730 -56233126 + BC1_Mm scRNA scRNA 1 79 -73 1 1085 698 261 26 53 chr11 65610656 65610846 -56233010 + ID_B1 SINE B4 9 193 -31 1 1085 536 310 28 0 chr11 65611473 65611618 -56232238 + RSINE1 SINE B4 4 152 -13 1 1085 408 20 0 0 chr11 65611621 65611670 -56232186 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1085 216 0 0 0 chr11 65611670 65611694 -56232162 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1085 644 168 16 0 chr11 65612163 65612295 -56231561 + ORR1D1 LTR MaLR 29 170 -214 1 1085 367 173 27 0 chr11 65612295 65612370 -56231486 + ORR1D1 LTR MaLR 298 374 0 1 1085 207 182 0 0 chr11 65612482 65612526 -56231330 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 1 1085 429 66 0 0 chr11 65612758 65612819 -56231037 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1085 360 0 0 0 chr11 65612821 65612861 -56230995 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 1 1085 6522 198 21 23 chr11 65612918 65614240 -56229616 - Lx7 LINE L1 0 7696 6378 1 1085 1381 199 61 3 chr11 65614240 65614528 -56229328 - L1_Mur3 LINE L1 -82 5798 5494 1 1085 229 282 14 0 chr11 65614599 65614670 -56229186 + L1MD LINE L1 5478 5549 -2446 1 1085 735 227 135 0 chr11 65614671 65614856 -56229000 + B3 SINE B2 7 216 0 1 1085 704 225 58 34 chr11 65614869 65615076 -56228780 - B3 SINE B2 0 216 5 1 1085 775 129 66 80 chr11 65616255 65616406 -56227450 + B1_Mur4 SINE Alu 2 150 0 1 1085 189 0 0 0 chr11 65616411 65616432 -56227424 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1085 248 116 0 0 chr11 65616993 65617036 -56226820 + PB1D7 SINE Alu 37 79 -41 1 1085 919 206 58 19 chr11 65617139 65617347 -56226509 - B3 SINE B2 0 216 1 2 1085 437 230 94 89 chr11 65617618 65617809 -56226047 - B3A SINE B2 -2 193 2 2 1085 229 309 176 94 chr11 65618207 65618525 -56225331 - Charlie7 DNA MER1_type -307 2305 1962 2 1085 274 203 0 33 chr11 65618894 65618955 -56224901 + ID SINE ID 1 59 -165 2 1085 437 250 167 14 chr11 65618961 65619099 -56224757 + RSINE1 SINE B4 5 163 -2 2 1085 362 368 108 11 chr11 65619215 65619575 -56224281 + L2a LINE L2 3031 3425 -1 2 1085 212 31 0 59 chr11 65620648 65620682 -56223174 + (CCCCG)n Simple_repeat Simple_repeat 4 35 0 2 1085 921 68 8 0 chr11 65621162 65621295 -56222561 - B2_Mm1a SINE B2 0 193 60 2 1085 1092 167 102 10 chr11 65621880 65622086 -56221770 - URR1B DNA MER1_type 0 225 1 2 1085 331 215 138 40 chr11 65622093 65622247 -56221609 - L1MEf LINE L1 -3172 2974 2800 2 1085 2035 141 95 40 chr11 65622247 65622646 -56221210 + MTC LTR MaLR 1 421 0 2 1085 331 214 139 39 chr11 65622646 65622695 -56221161 - L1MEf LINE L1 -3347 2799 2753 2 1085 376 231 8 35 chr11 65622780 65622897 -56220959 + PB1D7 SINE Alu 1 122 -5 2 1085 315 0 0 0 chr11 65623023 65623058 -56220798 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1085 1568 165 117 13 chr11 65623144 65623519 -56220337 + MTC LTR MaLR 1 414 -7 2 1085 249 304 0 14 chr11 65623839 65623909 -56219947 - ID4 SINE ID -4 79 11 2 1085 370 218 138 30 chr11 65623923 65624126 -56219730 - L1MEf LINE L1 -3984 2258 2034 2 1085 734 229 16 42 chr11 65624138 65624329 -56219527 - B3 SINE B2 -1 215 30 2 1085 1206 71 6 0 chr11 65624615 65624783 -56219073 - B2_Mm2 SINE B2 -25 170 2 2 1085 668 229 46 0 chr11 65624798 65624951 -56218905 - RSINE1 SINE B4 -3 162 3 2 1085 312 277 125 42 chr11 65624951 65625143 -56218713 - L1MEf LINE L1 -4492 1750 1543 2 1085 541 155 28 28 chr11 65625210 65625389 -56218467 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1085 249 122 20 0 chr11 65625885 65625934 -56217922 - B1_Mur4 SINE Alu -1 149 100 2 1085 204 158 0 0 chr11 65626660 65626698 -56217158 + CT-rich Low_complexity Low_complexity 1 38 0 2 1085 21 36 0 0 chr11 65626723 65626751 -56217105 + AT_rich Low_complexity Low_complexity 1 28 0 2 1085 363 233 0 14 chr11 65627153 65627227 -56216629 - ID4_ SINE ID -9 74 2 2 1085 24 0 0 0 chr11 65627334 65627358 -56216498 + AT_rich Low_complexity Low_complexity 1 24 0 2 1085 329 318 154 31 chr11 65627378 65627429 -56216427 - RSINE1 SINE B4 -17 148 100 2 1085 186 43 0 0 chr11 65627429 65627452 -56216404 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1085 329 318 154 31 chr11 65627452 65627530 -56216326 - RSINE1 SINE B4 -66 99 3 2 1085 420 284 134 0 chr11 65627533 65627660 -56216196 - B1F1 SINE Alu 0 149 6 2 1085 474 321 50 74 chr11 65628743 65629042 -56214814 - MER21B LTR ERV1 -450 413 122 2 1085 877 189 78 5 chr11 65630585 65630777 -56213079 - B3 SINE B2 -10 206 1 2 1085 439 320 86 41 chr11 65631097 65631364 -56212492 - Tigger7 DNA MER2_type -48 2443 2165 2 1085 877 284 59 93 chr11 65631372 65631760 -56212096 - Tigger7 DNA MER2_type -1919 572 198 2 1085 338 299 58 22 chr11 65631936 65632073 -56211783 + B1F1 SINE Alu 2 143 -6 2 1085 330 274 53 0 chr11 65632101 65632196 -56211660 - Tigger7 DNA MER2_type -2368 123 24 2 1085 942 292 39 42 chr11 65632308 65632839 -56211017 - L1M2 LINE L1 -867 5276 4729 2 1085 1330 111 21 0 chr11 65632840 65633030 -56210826 - B2_Mm2 SINE B2 0 195 2 2 1085 326 223 57 14 chr11 65633166 65633253 -56210603 + B1F1 SINE Alu 2 95 -52 2 1085 351 0 0 0 chr11 65633481 65633520 -56210336 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1085 297 253 38 0 chr11 65634619 65634698 -56209158 - MIRc SINE MIR -129 139 58 2 1085 255 323 10 0 chr11 65635406 65635502 -56208354 + MurSatRep1 Unknown Unknown 629 725 -1412 2 1085 842 190 0 0 chr11 65635815 65635952 -56207904 - B1_Mur1 SINE Alu -8 141 5 2 1085 298 310 34 14 chr11 65635961 65636108 -56207748 - MIRc SINE MIR -117 151 2 2 1085 235 189 19 19 chr11 65636934 65636988 -56206868 - RSINE1 SINE B4 -109 56 3 2 1085 21 36 0 0 chr11 65637570 65637598 -56206258 + AT_rich Low_complexity Low_complexity 1 28 0 2 1085 820 234 26 11 chr11 65637598 65637788 -56206068 - B3 SINE B2 -9 207 15 2 1085 252 86 0 0 chr11 65637790 65637825 -56206031 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2 1085 442 169 125 10 chr11 65639260 65639356 -56204500 + B3A SINE B2 1 107 -91 2 1085 414 0 0 0 chr11 65639357 65639403 -56204453 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1085 373 298 18 0 chr11 65639902 65640016 -56203840 - PB1D10 SINE Alu 0 117 2 2 1085 461 250 9 0 chr11 65640180 65640288 -56203568 + PB1 SINE Alu 1 109 -18 2 1085 751 173 71 0 chr11 65640468 65640595 -56203261 + B1_Mur4 SINE Alu 5 140 -10 2 1085 487 224 80 0 chr11 65640781 65640906 -56202950 + B1_Mur1 SINE Alu 3 137 -12 2 1085 357 169 101 64 chr11 65641026 65641210 -56202646 + B3A SINE B2 1 190 -5 2 1085 420 257 37 37 chr11 65641951 65642258 -56201598 + MMSAT4 Satellite Satellite 1 307 0 2 1085 292 228 69 0 chr11 65643206 65643307 -56200549 - Lx9 LINE L1 -61 7583 7476 2 1085 2231 199 195 42 chr11 65643306 65643956 -56199900 - Lx9 LINE L1 -753 6891 6142 2 1085 377 272 85 39 chr11 65644458 65644611 -56199245 + MER58A DNA MER1_type 46 205 -19 2 1085 446 272 17 17 chr11 65645469 65645585 -56198271 - PB1D10 SINE Alu -1 116 1 2 1085 3091 158 208 0 chr11 65646530 65647218 -56196638 + RMER21B LTR ERV1 1 831 -11 2 1085 461 149 0 0 chr11 65647220 65647294 -56196562 + RMER21B LTR ERV1 768 841 -1 2 1085 195 331 48 8 chr11 65647353 65647478 -56196378 - MIR SINE MIR -118 144 15 2 1085 195 129 0 0 chr11 65648893 65648924 -56194932 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1085 180 0 0 0 chr11 65648924 65648943 -56194913 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1085 377 279 0 0 chr11 65648948 65649034 -56194822 - PB1D10 SINE Alu -31 86 1 2 1085 737 228 45 179 chr11 65649502 65649808 -56194048 + B4 SINE B4 2 272 -20 2 1085 465 71 0 0 chr11 65649808 65649878 -56193978 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1085 737 228 45 179 chr11 65649878 65649907 -56193949 + B4 SINE B4 273 292 0 2 1085 567 296 22 51 chr11 65650679 65650857 -56192999 - B3A SINE B2 -14 184 12 2 1085 247 301 164 0 chr11 65651595 65651668 -56192188 - PB1D7 SINE Alu -8 112 28 2 1085 311 244 154 6 chr11 65652121 65652290 -56191566 - Charlie5 DNA MER1_type -49 2575 2382 2 1085 235 273 102 0 chr11 65652501 65652589 -56191267 + MamRep605 Unknown Unknown 723 819 -57 2 1085 351 0 0 0 chr11 65654224 65654263 -56189593 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1085 341 224 26 0 chr11 65654398 65654474 -56189382 - ID4 SINE ID -3 80 3 2 1085 1169 258 93 41 chr11 65654968 65655409 -56188447 + Lx8 LINE L1 6672 7135 -338 2 1085 22 56 0 0 chr11 65655560 65655596 -56188260 + AT_rich Low_complexity Low_complexity 1 36 0 2 1085 381 176 154 0 chr11 65655973 65656064 -56187792 + MER2 DNA MER2_type 119 223 -122 2 1085 257 265 145 0 chr11 65656123 65656206 -56187650 + MER2 DNA MER2_type 210 304 -41 2 1085 271 155 17 17 chr11 65656940 65656999 -56186857 + MLT1N2 LTR MaLR 500 558 -4 2 1085 513 0 0 0 chr11 65657982 65658039 -56185817 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1085 795 203 7 0 chr11 65658127 65658265 -56185591 - B1_Mur1 SINE Alu -10 139 1 2 1085 531 185 117 27 chr11 65658677 65658788 -56185068 - B3A SINE B2 -76 122 2 2 1085 512 292 14 0 chr11 65659110 65659257 -56184599 + MLT1B LTR MaLR 8 156 -234 2 1085 245 309 63 9 chr11 65659621 65659732 -56184124 + MTEb LTR MaLR 240 356 -23 2 1085 279 256 14 14 chr11 65659779 65659859 -56183997 - BC1_Mm scRNA scRNA -64 88 9 2 1085 560 172 88 14 chr11 65660121 65660268 -56183588 + URR1A DNA MER1_type 45 202 -24 2 1085 469 19 0 0 chr11 65660269 65660323 -56183533 - L1Md_F2 LINE L1 -676 5906 5853 2 1085 5503 52 1 7 chr11 65660323 65661008 -56182848 + L1Md_F2 LINE L1 5902 6582 0 2 1086 198 260 0 0 chr11 65667662 65667735 -56176121 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1086 459 0 0 0 chr11 65667858 65667909 -56175947 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1086 477 0 0 0 chr11 65667909 65667961 -56175895 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1086 237 65 0 0 chr11 65667970 65668001 -56175855 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2 1086 225 338 81 0 chr11 65668147 65668221 -56175635 - MER5A DNA MER1_type -98 91 12 2 1086 399 184 206 12 chr11 65669038 65669198 -56174658 - Lx9 LINE L1 -8 7636 7446 2 1086 274 304 14 0 chr11 65669365 65669434 -56174422 - tRNA-Ala-GCY_ tRNA tRNA -3 72 3 2 1086 389 281 65 29 chr11 65669589 65669728 -56174128 - MER5A DNA MER1_type -5 184 41 2 1086 646 207 22 0 chr11 65671075 65671210 -56172646 - B1F2 SINE Alu -10 139 2 2 1086 352 286 0 0 chr11 65672083 65672174 -56171682 - B3A SINE B2 -105 93 3 2 1086 270 0 0 0 chr11 65673366 65673396 -56170460 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1086 5279 35 2 8 chr11 65673403 65674037 -56169819 + L1Md_F3 LINE L1 5955 6584 0 2 1086 353 44 29 29 chr11 65675553 65675623 -56168233 + (TTTTTG)n Simple_repeat Simple_repeat 3 72 0 2 1086 893 77 131 0 chr11 65675624 65675754 -56168102 - B1_Mus2 SINE Alu 0 147 1 2 1086 532 170 113 0 chr11 65676126 65676232 -56167624 - B1_Mur4 SINE Alu -12 138 21 2 1086 245 233 65 100 chr11 65676149 65676325 -56167531 - MT2B2 LTR ERVL -337 264 94 2 1086 24 0 0 0 chr11 65676325 65676349 -56167507 + AT_rich Low_complexity Low_complexity 1 24 0 2 1086 3723 175 32 47 chr11 65676479 65677347 -56166509 + RLTR13A LTR ERVK 1 855 0 2 1086 865 117 0 14 chr11 65678554 65678702 -56165154 + (TCC)n Simple_repeat Simple_repeat 2 147 0 2 1086 318 276 99 44 chr11 65679738 65679920 -56163936 - L2b LINE L2 -4 3422 3222 2 1086 182 118 0 29 chr11 65680814 65680849 -56163007 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1086 23 0 0 0 chr11 65681173 65681196 -56162660 + AT_rich Low_complexity Low_complexity 1 23 0 3 1086 1707 209 71 18 chr11 65681375 65681770 -56162086 + MTD LTR MaLR 1 416 -3 3 1086 632 211 227 6 chr11 65682116 65682285 -56161571 + B4 SINE B4 1 208 -84 3 1086 1353 187 109 63 chr11 65682285 65682634 -56161222 - ORR1D1 LTR MaLR 0 374 10 3 1086 450 211 11 11 chr11 65682630 65682721 -56161135 + B4 SINE B4 195 285 -7 3 1086 429 20 0 0 chr11 65682725 65682775 -56161081 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1086 243 333 14 7 chr11 65682844 65682989 -56160867 + L1M4 LINE L1 3388 3533 -2613 3 1086 645 241 54 12 chr11 65682995 65683163 -56160693 + L1M4 LINE L1 4063 4237 -1909 3 1086 578 147 0 18 chr11 65683167 65683278 -56160578 + (TATG)n Simple_repeat Simple_repeat 2 110 0 3 1086 722 272 169 52 chr11 65683293 65683498 -56160358 + L1M4 LINE L1 4232 4502 -1644 3 1086 468 33 0 0 chr11 65683498 65683559 -56160297 - L1Md_T LINE L1 0 6582 6522 3 1086 722 272 169 52 chr11 65683559 65683915 -56159941 + L1M4 LINE L1 4503 4859 -1287 3 1086 430 283 16 32 chr11 65683935 65684059 -56159797 - B3A SINE B2 -1 197 76 3 1086 377 268 158 6 chr11 65684074 65684232 -56159624 + L1M4 LINE L1 4844 5025 -1121 3 1086 1082 153 10 31 chr11 65685377 65685572 -56158284 - B2_Mm2 SINE B2 -1 194 4 3 1086 1088 182 71 14 chr11 65686348 65686560 -56157296 - ID_B1 SINE B4 0 224 1 3 1086 512 262 60 36 chr11 65686680 65686846 -56157010 - B4A SINE B4 -6 286 117 3 1086 929 173 93 10 chr11 65686824 65687028 -56156828 - URR1A DNA MER1_type -5 221 1 3 1086 242 336 61 17 chr11 65687028 65687142 -56156714 - B4 SINE B4 -139 153 35 3 1086 467 301 92 44 chr11 65688588 65688883 -56154973 + LTR52 LTR ERVL 4 312 -109 3 1086 760 334 92 27 chr11 65688888 65689368 -56154488 - Lx7 LINE L1 -37 7436 6925 3 1086 247 280 138 39 chr11 65689471 65689601 -56154255 + ORR1E LTR MaLR 43 185 -174 3 1086 229 353 8 8 chr11 65689950 65690070 -56153786 - L2c LINE L2 0 3387 3268 3 1086 194 309 14 14 chr11 65690592 65690661 -56153195 + L2c LINE L2 3242 3310 -77 3 1086 216 0 0 0 chr11 65690727 65690751 -56153105 + (GGCTG)n Simple_repeat Simple_repeat 3 26 0 3 1086 396 0 0 0 chr11 65691566 65691610 -56152246 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1086 333 309 89 63 chr11 65691981 65692171 -56151685 + MLT1B LTR MaLR 11 205 -185 3 1086 206 268 28 0 chr11 65692437 65692508 -56151348 - MIRc SINE MIR -104 164 92 3 1086 450 0 0 0 chr11 65692570 65692620 -56151236 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1086 304 289 70 9 chr11 65694848 65694963 -56148893 + MER117 DNA MER1_type 29 150 -47 3 1086 684 177 92 7 chr11 65695441 65695583 -56148273 + B3 SINE B2 2 155 -61 3 1086 1640 257 29 38 chr11 65696411 65696888 -56146968 + RMER19C LTR ERVK 139 611 0 3 1086 231 228 35 81 chr11 65698100 65698186 -56145670 - B3 SINE B2 0 216 135 3 1086 586 143 75 0 chr11 65698343 65698504 -56145352 + CT-rich Low_complexity Low_complexity 4 176 0 3 1086 695 173 34 11 chr11 65698528 65698703 -56145153 + CT-rich Low_complexity Low_complexity 2 180 0 3 1086 295 269 33 48 chr11 65698713 65698806 -56145050 - PB1D10 SINE Alu -49 100 3 3 1086 462 36 0 0 chr11 65699360 65699416 -56144440 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1086 189 147 0 0 chr11 65700600 65700634 -56143222 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1086 1756 185 65 0 chr11 65700994 65701335 -56142521 + ORR1D1 LTR MaLR 12 374 0 3 1086 5979 187 78 9 chr11 65701335 65702617 -56141239 + ORR1D1-int LTR MaLR 1 1370 0 3 1086 1485 220 67 28 chr11 65702617 65702977 -56140879 + ORR1D1 LTR MaLR 1 374 0 3 1086 441 202 24 0 chr11 65703017 65703101 -56140755 + PB1D10 SINE Alu 31 116 -1 3 1086 399 338 142 19 chr11 65703303 65703750 -56140106 + L1MEg LINE L1 922 1459 -4766 3 1086 1940 298 68 20 chr11 65704025 65704721 -56139135 + Lx8 LINE L1 6129 6857 -616 3 1086 505 76 6 83 chr11 65704721 65704878 -56138978 + CT-rich Low_complexity Low_complexity 1 145 0 3 1086 1060 4 55 0 chr11 65704879 65705117 -56138739 + (TTC)n Simple_repeat Simple_repeat 1 251 0 3 1086 189 0 0 0 chr11 65705117 65705138 -56138718 + (CAT)n Simple_repeat Simple_repeat 2 22 0 3 1086 907 121 0 54 chr11 65705140 65705289 -56138567 - B1_Mus1 SINE Alu -6 142 2 3 1086 2051 272 38 38 chr11 65705300 65705875 -56137981 + Lx8 LINE L1 6841 7427 -46 3 1086 1580 172 111 73 chr11 65705875 65706244 -56137612 - ORR1C2 LTR MaLR 0 384 2 3 1086 2051 272 38 38 chr11 65706244 65706301 -56137555 + Lx8 LINE L1 7428 7473 0 3 1086 525 335 41 0 chr11 65706443 65706613 -56137243 + B3 SINE B2 40 216 0 3 1086 814 293 115 29 chr11 65706621 65707039 -56136817 + L1MA6 LINE L1 5551 6004 -296 3 1086 277 306 146 24 chr11 65709057 65709221 -56134635 - Lx8 LINE L1 0 7473 7290 3 1086 481 282 112 0 chr11 65709795 65709983 -56133873 + MER2 DNA MER2_type 122 330 -15 3 1086 585 0 0 0 chr11 65710313 65710378 -56133478 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 3 1086 1632 17 0 0 chr11 65710379 65710559 -56133297 - B2_Mm1a SINE B2 -12 181 2 3 1086 38541 16 2 7 chr11 65710673 65715877 -56127979 + L1Md_A LINE L1 416 5586 -297 3 1086 9034 9 1 0 chr11 65715877 65716871 -56126985 + L1Md_A LINE L1 5587 6581 -1 3 1086 879 105 0 0 chr11 65717022 65717155 -56126701 + (TC)n Simple_repeat Simple_repeat 2 134 0 3 1086 632 308 21 27 chr11 65717178 65717365 -56126491 - B3A SINE B2 -12 186 1 3 1086 360 43 0 0 chr11 65717554 65717600 -56126256 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1086 285 271 132 59 chr11 65717988 65718192 -56125664 + MLT1A0 LTR MaLR 5 223 -142 3 1086 263 330 59 0 chr11 65719111 65719229 -56124627 + MER91B DNA Tip100 41 165 -25 3 1086 654 13 0 0 chr11 65719458 65719533 -56124323 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1086 261 272 51 61 chr11 65719768 65719866 -56123990 + MLT1A0 LTR MaLR 300 396 -12 3 1086 21 0 0 0 chr11 65720630 65720651 -56123205 + AT_rich Low_complexity Low_complexity 1 21 0 3 1086 529 162 0 84 chr11 65720821 65720963 -56122893 + RLTR11B LTR ERVK 113 242 -211 3 1086 288 0 0 0 chr11 65720963 65720995 -56122861 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1086 537 16 0 0 chr11 65720997 65721059 -56122797 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 3 1086 1145 149 44 32 chr11 65721071 65721321 -56122535 + RLTR11B LTR ERVK 201 453 0 3 1086 260 322 234 5 chr11 65721323 65721507 -56122349 - MER2 DNA MER2_type -77 268 43 3 1086 23 0 0 0 chr11 65721607 65721630 -56122226 + AT_rich Low_complexity Low_complexity 1 23 0 3 1086 2960 70 10 5 chr11 65721873 65722273 -56121583 - L1_Mus3 LINE L1 -5 6633 6232 3 1086 307 268 112 10 chr11 65722280 65722378 -56121478 - B3 SINE B2 -29 187 80 3 1086 497 226 104 15 chr11 65722992 65723127 -56120729 - MTE2b LTR MaLR -51 328 182 3 1086 651 132 116 0 chr11 65723129 65723242 -56120614 - ORR1B2 LTR MaLR 0 378 252 3 1086 2016 134 3 49 chr11 65723242 65723392 -56120464 + ORR1A4 LTR MaLR 1 150 -179 3 1086 6763 56 7 9 chr11 65723392 65724199 -56119657 + L1_Mus1 LINE L1 5762 6567 0 3 1086 2016 134 3 49 chr11 65724199 65724393 -56119463 + ORR1A4 LTR MaLR 151 329 0 3 1086 1411 134 22 9 chr11 65724393 65724610 -56119246 - ORR1B2 LTR MaLR -145 222 3 3 1086 741 198 30 127 chr11 65724615 65724812 -56119044 - MTE2a LTR MaLR -199 180 3 3 1086 509 262 99 35 chr11 65724875 65725077 -56118779 - L1MA5 LINE L1 -6 6294 6080 3 1086 449 299 125 0 chr11 65725809 65725953 -56117903 - RSINE1 SINE B4 0 165 4 3 1086 1235 279 6 12 chr11 65726312 65726635 -56117221 - L1MB5 LINE L1 -2 6172 5852 3 1086 590 281 32 11 chr11 65726732 65726919 -56116937 - RMER30 DNA MER1_type -2 200 10 3 1086 191 229 16 0 chr11 65726971 65727032 -56116824 + CT-rich Low_complexity Low_complexity 3 64 0 3 1086 2163 92 50 0 chr11 65727036 65727339 -56116517 + ORR1A2 LTR MaLR 10 327 0 3 1086 290 300 62 0 chr11 65727382 65727462 -56116394 - PB1D10 SINE Alu -21 96 12 3 1086 232 172 119 17 chr11 65727537 65727596 -56116260 + MLT1A1 LTR MaLR 4 68 -340 3 1086 228 350 16 24 chr11 65727745 65727868 -56115988 + MLT1A1 LTR MaLR 287 408 0 3 1086 1993 218 103 71 chr11 65729710 65729948 -56113908 + RLTR40 LTR ERVK 53 285 -532 3 1086 360 0 0 0 chr11 65729948 65729988 -56113868 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1086 1993 218 103 71 chr11 65729988 65730439 -56113417 + RLTR40 LTR ERVK 286 763 -54 3 1086 377 270 176 20 chr11 65730734 65730836 -56113020 + PB1D7 SINE Alu 1 118 -2 3 1086 730 196 32 19 chr11 65730883 65731039 -56112817 - RLTR40 LTR ERVK -547 270 113 3 1086 573 15 0 0 chr11 65731259 65731325 -56112531 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 1086 3236 231 98 8 chr11 65734475 65734936 -56108920 + Lx8 LINE L1 6140 6624 -849 3 1086 345 100 0 0 chr11 65734936 65734986 -56108870 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1086 3236 231 98 8 chr11 65734986 65735306 -56108550 + Lx8 LINE L1 6625 6991 -482 3 1086 719 89 0 18 chr11 65735308 65735422 -56108434 + (TCTCCC)n Simple_repeat Simple_repeat 4 115 0 3 1086 843 274 84 0 chr11 65735433 65735670 -56108186 + Lx8 LINE L1 7004 7260 -213 3 1086 282 95 0 0 chr11 65735716 65735758 -56108098 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1086 329 266 24 65 chr11 65736051 65736220 -56107636 + HAL1 LINE L1 1623 1784 -723 3 1086 772 279 64 5 chr11 65736422 65736624 -56107232 + B3 SINE B2 1 214 -2 3 1086 2720 183 21 8 chr11 65736644 65737105 -56106751 + Lx4B LINE L1 6578 7045 -13 3 1086 513 0 0 0 chr11 65737105 65737162 -56106694 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1086 545 135 0 11 chr11 65737807 65737897 -56105959 - ORR1C2 LTR MaLR -1 383 295 3 1086 435 198 11 11 chr11 65737865 65737952 -56105904 + ORR1C2 LTR MaLR 298 384 0 3 1086 293 260 145 105 chr11 65738257 65738429 -56105427 - B3A SINE B2 -19 179 1 3 1086 202 216 0 0 chr11 65738439 65738476 -56105380 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1086 185 290 0 0 chr11 65739506 65739572 -56104284 - MIRb SINE MIR -62 206 137 3 1086 239 325 63 46 chr11 65739675 65739849 -56104007 - Lx6 LINE L1 -30 7430 7254 3 1086 31 0 0 0 chr11 65739875 65739906 -56103950 + AT_rich Low_complexity Low_complexity 1 31 0 3 1086 325 306 118 6 chr11 65739910 65740071 -56103785 - Lx7 LINE L1 -365 7331 7153 3 1086 428 198 11 44 chr11 65740440 65740530 -56103326 - PB1D10 SINE Alu -21 96 10 3 1086 188 255 105 70 chr11 65742027 65742141 -56101715 + MIRm SINE MIR 35 152 -124 3 1086 285 239 33 86 chr11 65742441 65742573 -56101283 - Lx9 LINE L1 -9 7635 7512 3 1086 360 0 0 0 chr11 65742573 65742613 -56101243 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1086 285 239 33 86 chr11 65742613 65742631 -56101225 - Lx9 LINE L1 -133 7511 7494 3 1086 238 298 34 34 chr11 65743390 65743508 -56100348 + MLT1A0 LTR MaLR 248 365 0 4 1086 214 353 9 64 chr11 65743566 65743675 -56100181 + L2a LINE L2 3069 3171 -255 4 1086 303 339 81 63 chr11 65744461 65744732 -56099124 + L2c LINE L2 3112 3387 0 4 1086 506 273 97 14 chr11 65744940 65745085 -56098771 - RSINE1 SINE B4 -4 161 5 4 1086 297 391 35 10 chr11 65745115 65745314 -56098542 - L2a LINE L2 -207 3219 3016 4 1086 1429 241 70 6 chr11 65745939 65746483 -56097373 + L1_Mur3 LINE L1 843 1415 -4465 4 1086 3326 201 103 10 chr11 65746481 65747293 -56096563 + L1_Mur3 LINE L1 1747 2634 -3246 4 1086 1130 203 21 50 chr11 65747288 65747625 -56096231 + L1_Mur3 LINE L1 3096 3422 -2458 4 1086 435 155 40 20 chr11 65747605 65747704 -56096152 + L1_Mur3 LINE L1 1476 1576 -4304 4 1086 1077 256 39 77 chr11 65747704 65747861 -56095995 - ORR1C2 LTR MaLR -34 350 191 4 1086 185 0 40 0 chr11 65747861 65747886 -56095970 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1086 687 44 0 0 chr11 65747886 65747977 -56095879 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 1086 1077 256 39 77 chr11 65747977 65748182 -56095674 - ORR1C2 LTR MaLR -194 190 2 4 1086 320 171 14 1 chr11 65748182 65748251 -56095605 + L1_Mur3 LINE L1 3427 3498 -416 4 1086 977 259 74 30 chr11 65748502 65748773 -56095083 - B4 SINE B4 -7 285 3 4 1086 225 135 173 0 chr11 65748852 65748904 -56094952 - L1M5 LINE L1 -622 5502 5442 4 1086 2148 278 25 13 chr11 65749348 65749956 -56093900 - Lx8 LINE L1 -589 6884 6270 4 1086 701 270 63 17 chr11 65749952 65750189 -56093667 + Lx8 LINE L1 6890 7137 -336 4 1086 574 124 9 9 chr11 65750256 65750355 -56093501 + (GGA)n Simple_repeat Simple_repeat 2 100 0 4 1086 239 0 32 0 chr11 65750355 65750386 -56093470 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1086 574 124 9 9 chr11 65750386 65750392 -56093464 + (GGA)n Simple_repeat Simple_repeat 2 7 0 4 1086 331 249 163 44 chr11 65750428 65750655 -56093201 + Lx8 LINE L1 7214 7467 -6 4 1086 344 195 63 25 chr11 65750656 65750735 -56093121 + MER57C2 LTR ERV1 104 185 -249 4 1086 231 36 0 0 chr11 65750750 65750778 -56093078 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1086 472 374 59 37 chr11 65752565 65752887 -56090969 + ORR1E LTR MaLR 26 354 -5 4 1086 3664 235 26 11 chr11 65753398 65754193 -56089663 + L1_Rod LINE L1 7 813 -6359 4 1086 524 198 8 97 chr11 65754193 65754327 -56089529 + MTD LTR MaLR 293 414 -5 4 1086 1725 246 8 26 chr11 65754333 65754713 -56089143 + MTE2a LTR MaLR 7 379 0 4 1086 229 211 105 0 chr11 65754764 65754821 -56089035 + L1MA9 LINE L1 6212 6274 -38 4 1086 317 339 61 26 chr11 65754874 65754989 -56088867 - B1F1 SINE Alu -29 120 2 4 1086 279 0 0 0 chr11 65755622 65755653 -56088203 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1086 3326 273 127 50 chr11 65756622 65756717 -56087139 + L1MA7 LINE L1 3325 3433 -2710 4 1086 373 129 14 0 chr11 65756717 65756787 -56087069 + L1Md_F2 LINE L1 6512 6582 0 4 1086 3326 273 127 50 chr11 65756787 65757523 -56086333 + L1MA7 LINE L1 3434 4159 -1984 4 1086 396 0 0 0 chr11 65757523 65757567 -56086289 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1086 3326 273 127 50 chr11 65757567 65757750 -56086106 + L1MA7 LINE L1 4160 4372 -1771 4 1086 1816 172 16 141 chr11 65757750 65758177 -56085679 - ORR1D1 LTR MaLR 0 374 1 4 1086 3326 288 178 50 chr11 65758177 65759816 -56084040 + L1MA7 LINE L1 4343 6236 -55 4 1086 318 297 41 33 chr11 65760408 65760530 -56083326 - MIRb SINE MIR -58 210 88 4 1086 328 320 0 10 chr11 65760697 65760801 -56083055 + G-rich Low_complexity Low_complexity 4 106 0 4 1086 318 282 159 8 chr11 65760801 65760933 -56082923 + HAL1-3A_ME LINE L1 2284 2435 -423 4 1086 315 270 0 13 chr11 65761525 65761600 -56082256 + Lx8 LINE L1 5656 5729 -1744 4 1086 1560 225 135 5 chr11 65761705 65762076 -56081780 - MTD LTR MaLR 0 419 1 4 1086 23 33 0 0 chr11 65762172 65762202 -56081654 + AT_rich Low_complexity Low_complexity 1 30 0 4 1086 710 290 121 71 chr11 65762282 65762702 -56081154 + MER89 LTR ERV1 119 559 0 4 1086 210 71 0 0 chr11 65762910 65762938 -56080918 + (CCCCAG)n Simple_repeat Simple_repeat 4 31 0 4 1086 576 239 0 83 chr11 65762946 65763138 -56080718 + HAL1-2a_MD LINE L1 2331 2506 -518 4 1086 210 143 0 0 chr11 65763170 65763205 -56080651 + (CAT)n Simple_repeat Simple_repeat 3 37 0 4 1086 316 301 32 0 chr11 65763205 65763298 -56080558 + MER5A DNA MER1_type 28 123 -66 4 1086 392 321 143 29 chr11 65764678 65765028 -56078828 - L2a LINE L2 0 3426 3037 4 1086 573 300 56 38 chr11 65765145 65765464 -56078392 - L2a LINE L2 -553 2866 2542 4 1086 387 0 0 0 chr11 65765558 65765601 -56078255 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1086 210 37 0 0 chr11 65767590 65767617 -56076239 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1086 403 250 16 34 chr11 65767917 65768053 -56075803 + MLT1A1 LTR MaLR 237 408 0 4 1086 541 281 19 70 chr11 65770546 65770703 -56073153 + RSINE1 SINE B4 2 150 -15 4 1086 9957 90 8 1 chr11 65770703 65772813 -56071043 - L1_Mus3 LINE L1 -4 6634 4512 4 1086 384 349 23 0 chr11 65773690 65773819 -56070037 - RSINE1 SINE B4 -33 132 1 4 1086 632 112 16 1 chr11 65773819 65773955 -56069901 + Lx LINE L1 6435 6653 -1 4 1086 219 36 0 0 chr11 65773982 65774010 -56069846 + (CATA)n Simple_repeat Simple_repeat 2 29 0 4 1086 981 209 37 46 chr11 65775220 65775436 -56068420 + B3 SINE B2 1 214 -2 4 1086 829 280 61 47 chr11 65775897 65776174 -56067682 + MER58B DNA MER1_type 13 293 -48 4 1086 370 325 127 19 chr11 65776208 65776421 -56067435 + LTR89 LTR ERVL? 368 603 -276 4 1086 309 26 0 0 chr11 65776721 65776759 -56067097 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 4 1086 384 320 51 19 chr11 65780368 65780524 -56063332 + MER5B DNA MER1_type 7 167 -11 4 1086 2190 138 48 70 chr11 65781279 65781652 -56062204 + ORR1B2 LTR MaLR 3 367 0 4 1086 7625 175 60 3 chr11 65781653 65783077 -56060779 + ORR1B2-int LTR MaLR 2 1507 -2 4 1086 2116 176 28 0 chr11 65783083 65783436 -56060420 + ORR1B2 LTR MaLR 5 367 0 4 1086 460 303 64 84 chr11 65784772 65785068 -56058788 - L1ME4a LINE L1 -238 5886 5597 4 1086 2667 150 54 5 chr11 65785253 65785695 -56058161 - RMER4A LTR ERVK -2 464 1 4 1086 798 67 0 0 chr11 65787159 65787264 -56056592 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 1086 654 334 102 64 chr11 65787779 65788872 -56054984 - L2 LINE L2 -1476 1943 809 4 1086 1309 178 14 18 chr11 65788889 65789106 -56054750 + B3 SINE B2 1 216 0 4 1086 462 18 0 0 chr11 65789467 65789522 -56054334 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1086 378 0 0 0 chr11 65791144 65791186 -56052670 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1086 768 88 0 0 chr11 65791186 65791299 -56052557 + (GA)n Simple_repeat Simple_repeat 1 114 0 4 1086 286 59 38 38 chr11 65791317 65791370 -56052486 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 4 1086 1078 172 62 9 chr11 65791485 65791696 -56052160 + MTC LTR MaLR 1 222 -199 4 1086 338 253 22 0 chr11 65791681 65791772 -56052084 + MTC LTR MaLR 327 419 0 4 1086 696 243 23 20 chr11 65791772 65791919 -56051937 + B3 SINE B2 16 166 -50 4 1086 473 0 18 0 chr11 65791919 65791976 -56051880 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1086 696 226 20 7 chr11 65791976 65791997 -56051859 + B3 SINE B2 167 188 -28 4 1086 859 143 0 14 chr11 65792783 65792925 -56050931 - URR1B DNA MER1_type 0 225 86 4 1086 639 39 0 0 chr11 65793458 65793536 -56050320 + (TA)n Simple_repeat Simple_repeat 1 78 0 4 1086 258 32 0 0 chr11 65793536 65793566 -56050290 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1086 307 279 49 153 chr11 65793982 65794126 -56049730 + B1F SINE Alu 10 138 -11 4 1086 428 150 12 0 chr11 65794141 65794221 -56049635 + GA-rich Low_complexity Low_complexity 2 82 0 4 1086 849 183 171 5 chr11 65794930 65795117 -56048739 - URR1B DNA MER1_type -7 218 1 4 1086 421 222 122 181 chr11 65796046 65796250 -56047606 - B3A SINE B2 0 216 1 4 1086 288 349 115 40 chr11 65796346 65796546 -56047310 + L1MEg LINE L1 1025 1239 -5863 4 1086 728 172 125 0 chr11 65796962 65797090 -56046766 + B1_Mur4 SINE Alu 1 144 -6 4 1086 214 194 0 29 chr11 65797118 65797187 -56046669 + GA-rich Low_complexity Low_complexity 2 68 0 4 1086 339 299 99 26 chr11 65797246 65797397 -56046459 + L1MEg LINE L1 2799 2960 -4142 4 1086 488 282 169 0 chr11 65797584 65797779 -56046077 + MER2 DNA MER2_type 21 248 -97 4 135 382 312 81 94 chr11 65797990 65798543 -56045313 + L1MEg LINE L1 3190 3722 -3284 4 1087 514 280 179 50 chr11 65799122 65799781 -56044075 + L1MEg LINE L1 4305 5048 -1958 4 1087 393 256 101 36 chr11 65799798 65799936 -56043920 - B1_Mur2 SINE Alu -1 148 2 4 1087 467 313 68 20 chr11 65800022 65800270 -56043586 + L1ME3A LINE L1 5914 6173 0 4 1087 248 286 9 28 chr11 65801147 65801158 -56042698 + MIR SINE MIR 139 149 -113 4 1087 632 320 68 12 chr11 65801158 65801484 -56042372 - MER2 DNA MER2_type -1 344 1 4 1087 248 286 9 28 chr11 65801484 65801580 -56042276 + MIR SINE MIR 150 244 -18 4 1087 1587 215 123 9 chr11 65801800 65802173 -56041683 - MTD LTR MaLR -9 410 5 4 1087 284 315 0 37 chr11 65802782 65802917 -56040939 + T-rich Low_complexity Low_complexity 5 134 0 4 1087 230 378 81 0 chr11 65803614 65803762 -56040094 + MIR3 SINE MIR 24 183 -25 4 1087 319 271 125 0 chr11 65804058 65804154 -56039702 + PB1D7 SINE Alu 1 108 -12 4 1087 468 0 0 0 chr11 65804155 65804207 -56039649 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 4 1087 1548 199 125 12 chr11 65804297 65804633 -56039223 - ORR1D1 LTR MaLR 0 374 1 4 1087 265 247 247 0 chr11 65805242 65805335 -56038521 - L2 LINE L2 -1897 1522 1407 4 1087 180 316 179 75 chr11 65806560 65806772 -56037084 - MIR SINE MIR -28 234 1 4 1087 239 293 181 37 chr11 65808432 65808620 -56035236 + L2a LINE L2 2961 3175 -251 4 1087 2043 144 15 3 chr11 65808629 65808963 -56034893 + ORR1A1 LTR MaLR 1 338 -8 4 1087 930 268 116 8 chr11 65809357 65809624 -56034232 - MTEa LTR MaLR -83 296 1 4 1087 386 348 20 65 chr11 65809734 65809934 -56033922 - MIRb SINE MIR -29 239 49 4 1087 21 36 0 0 chr11 65810445 65810473 -56033383 + AT_rich Low_complexity Low_complexity 1 28 0 4 1087 444 319 0 0 chr11 65810476 65810589 -56033267 - PB1D10 SINE Alu -4 113 1 4 1087 27 0 0 0 chr11 65811165 65811192 -56032664 + AT_rich Low_complexity Low_complexity 1 27 0 4 1087 472 181 23 108 chr11 65811275 65811405 -56032451 - L1MCa LINE L1 -4088 2420 2302 4 1087 256 321 66 35 chr11 65813256 65813482 -56030374 + L1MB8 LINE L1 5798 6030 -148 4 1087 3989 291 50 48 chr11 65813623 65815914 -56027942 + Lx8 LINE L1 5173 7473 0 5 1087 352 159 0 14 chr11 65816054 65816124 -56027732 + L1VL1 LINE L1 31 99 -6323 5 1087 327 111 0 0 chr11 65816123 65816168 -56027688 + L1Md_A LINE L1 935 979 -5745 5 1087 690 198 16 0 chr11 65816168 65816289 -56027567 - B3A SINE B2 -75 123 1 5 1087 495 0 0 0 chr11 65816298 65816353 -56027503 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1087 229 172 41 41 chr11 65816353 65816450 -56027406 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 1087 303 230 11 33 chr11 65817352 65817536 -56026320 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1087 518 192 20 7 chr11 65817498 65817650 -56026206 + (TG)n Simple_repeat Simple_repeat 2 155 0 5 1087 352 295 118 39 chr11 65817806 65817933 -56025923 - B1F1 SINE Alu -1 146 10 5 1087 420 279 45 0 chr11 65820641 65820752 -56023104 + PB1D10 SINE Alu 2 117 0 5 1087 34091 76 5 44 chr11 65820806 65826933 -56016923 + L1Md_F2 LINE L1 441 6487 -98 5 1087 522 56 40 100 chr11 65827048 65827148 -56016708 + L1Md_F2 LINE L1 6491 6584 -1 5 1087 2088 157 94 13 chr11 65828374 65828755 -56015101 + MTC LTR MaLR 1 412 -9 5 1087 869 287 81 53 chr11 65828940 65829223 -56014633 + B4A SINE B4 2 292 0 5 1087 220 246 16 16 chr11 65829584 65829646 -56014210 + CT-rich Low_complexity Low_complexity 3 64 0 5 1087 310 270 27 0 chr11 65829681 65829755 -56014101 - L1MA10 LINE L1 -42 6292 6217 5 1087 443 318 83 21 chr11 65829883 65830124 -56013732 + L1MB1 LINE L1 5870 6125 -64 5 1087 185 94 31 0 chr11 65831045 65831077 -56012779 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1087 398 203 14 14 chr11 65831437 65831507 -56012349 + ID4_ SINE ID 5 74 -9 5 1087 498 61 0 0 chr11 65831569 65831635 -56012221 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1087 360 0 0 0 chr11 65832842 65832882 -56010974 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1087 763 282 96 3 chr11 65834068 65834360 -56009496 + L1_Mur3 LINE L1 3872 4190 -1690 5 1087 963 315 37 96 chr11 65834432 65834713 -56009143 + Lx8 LINE L1 6700 6986 -487 5 1087 3253 42 25 0 chr11 65834713 65835114 -56008742 + RLTR10A LTR ERVK 1 411 0 5 1087 963 315 37 96 chr11 65835114 65835428 -56008428 + Lx8 LINE L1 6987 7260 -213 5 1087 476 324 70 6 chr11 65835522 65835851 -56008005 + L1MA4A LINE L1 4314 4663 -1480 5 1087 626 279 115 31 chr11 65835859 65836060 -56007796 + L1MA4A LINE L1 5559 5786 -517 5 1087 429 70 0 0 chr11 65836060 65836117 -56007739 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1087 626 279 115 31 chr11 65836117 65836237 -56007619 + L1MA4A LINE L1 5787 5906 -397 5 1087 3042 172 64 16 chr11 65836511 65837060 -56006796 + RMER15 LTR ERVL 1 575 0 5 1087 268 281 137 0 chr11 65837296 65837449 -56006407 + ORSL-2a DNA Tip100 141 314 -28 5 1087 298 312 40 53 chr11 65839090 65839242 -56004614 + MLT1D LTR MaLR 19 168 -337 5 1087 600 53 0 0 chr11 65839242 65839318 -56004538 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1087 23 33 0 0 chr11 65839638 65839668 -56004188 + AT_rich Low_complexity Low_complexity 1 30 0 5 1087 1218 55 0 0 chr11 65839830 65839976 -56003880 - B1_Mm SINE Alu -1 146 1 5 1087 527 316 120 15 chr11 65840642 65840967 -56002889 + ORR1E LTR MaLR 1 359 0 5 1087 421 201 149 56 chr11 65841328 65841523 -56002333 - RMER20B LTR ERVK -235 392 180 5 1087 271 184 154 58 chr11 65841779 65841883 -56001973 + MLT1D LTR MaLR 294 407 -1 5 1087 520 217 83 0 chr11 65841908 65842028 -56001828 - B1F2 SINE Alu -16 133 4 5 1087 328 321 85 59 chr11 65843386 65843727 -56000129 - L1M5 LINE L1 -1562 4584 4235 5 1087 411 325 58 92 chr11 65844501 65844607 -55999249 - B4 SINE B4 -6 286 185 5 1087 272 0 40 40 chr11 65844607 65844657 -55999199 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 1087 1155 95 0 0 chr11 65844662 65844809 -55999047 - B1_Mus1 SINE Alu 0 148 2 5 1087 411 325 58 92 chr11 65844809 65844991 -55998865 - B4 SINE B4 -108 184 2 5 1087 192 246 0 0 chr11 65845009 65845078 -55998778 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1087 350 298 7 58 chr11 65846189 65846328 -55997528 + L1M5 LINE L1 4889 5020 -1126 5 1087 547 314 97 53 chr11 65850216 65850627 -55993229 - Tigger9a DNA Tigger 0 732 304 5 1087 311 304 13 0 chr11 65851639 65851718 -55992138 + ID4 SINE ID 4 83 0 5 1087 1218 253 112 23 chr11 65852424 65852808 -55991048 - MTD LTR MaLR -1 418 1 5 1087 803 293 68 43 chr11 65854580 65854858 -55988998 - B4 SINE B4 0 292 8 5 1087 204 284 15 0 chr11 65855281 65855348 -55988508 + MIR SINE MIR 120 187 -75 5 1087 658 253 7 0 chr11 65855397 65855551 -55988305 + B3 SINE B2 1 155 -61 5 1087 1746 185 68 29 chr11 65855556 65855940 -55987916 - MTB_Mm LTR MaLR -8 399 1 5 1087 367 192 27 0 chr11 65855940 65856004 -55987852 + B3 SINE B2 151 216 0 5 1087 504 250 0 18 chr11 65856581 65856691 -55987165 + PB1D10 SINE Alu 1 108 -9 5 1087 906 122 0 0 chr11 65856716 65856896 -55986960 + (CAAG)n Simple_repeat Simple_repeat 1 180 0 5 1087 734 329 40 40 chr11 65857200 65857694 -55986162 + L1ME4a LINE L1 5469 5962 -162 5 1087 21 36 0 0 chr11 65857786 65857814 -55986042 + AT_rich Low_complexity Low_complexity 1 28 0 5 1087 504 259 83 12 chr11 65857830 65857998 -55985858 + Lx7 LINE L1 7040 7219 -477 5 1087 387 0 0 0 chr11 65858499 65858542 -55985314 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1087 227 186 0 0 chr11 65858641 65858684 -55985172 + GA-rich Low_complexity Low_complexity 5 47 0 5 1087 202 301 97 0 chr11 65858843 65858946 -55984910 - MIR SINE MIR -62 146 34 5 1087 369 0 0 0 chr11 65859935 65859976 -55983880 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1087 360 0 0 0 chr11 65860932 65860972 -55982884 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 1087 297 218 254 36 chr11 65861643 65861781 -55982075 + MER20 DNA MER1_type 4 171 -48 5 1087 189 107 0 0 chr11 65863320 65863348 -55980508 + (CCA)n Simple_repeat Simple_repeat 1 28 0 5 1087 348 219 40 114 chr11 65863375 65863576 -55980280 + HAL1-2a_MD LINE L1 2326 2511 -513 5 1087 200 34 0 33 chr11 65864288 65864318 -55979538 + (GTATG)n Simple_repeat Simple_repeat 4 32 0 5 1087 271 289 0 24 chr11 65864522 65864607 -55979249 + MLT1A1 LTR MaLR 322 404 -4 5 1087 226 322 0 0 chr11 65864795 65864854 -55979002 - ID4_ SINE ID -24 59 1 5 1087 191 156 0 43 chr11 65865664 65865711 -55978145 + CT-rich Low_complexity Low_complexity 4 48 0 5 1087 255 103 0 0 chr11 65865720 65865759 -55978097 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1087 724 132 8 8 chr11 65867609 65867739 -55976117 + (TA)n Simple_repeat Simple_repeat 2 131 0 5 1087 237 278 0 0 chr11 65867763 65867817 -55976039 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1087 343 259 49 81 chr11 65868337 65868522 -55975334 + L1MC2 LINE L1 5934 6112 -232 5 1087 2008 160 56 18 chr11 65868616 65869011 -55974845 - MTC LTR MaLR 0 421 12 5 1087 362 310 42 14 chr11 65869161 65869305 -55974551 - L2a LINE L2 0 3426 3279 5 1087 587 192 6 0 chr11 65869461 65869638 -55974218 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 5 1087 344 97 0 16 chr11 65869662 65869725 -55974131 + (TATG)n Simple_repeat Simple_repeat 3 64 0 5 1087 291 28 0 0 chr11 65871294 65871330 -55972526 - U2 snRNA snRNA -152 36 1 5 1087 243 250 26 117 chr11 65872517 65872594 -55971262 - ID4_ SINE ID -11 72 3 5 1087 262 309 62 31 chr11 65873156 65873286 -55970570 + MARNA DNA Mariner 16 149 -437 5 1087 2229 169 52 40 chr11 65874822 65875321 -55968535 + RLTR12B LTR ERVK 17 521 -7 5 1087 207 319 14 0 chr11 65875751 65875823 -55968033 + L2b LINE L2 3288 3360 -15 5 1087 517 257 64 144 chr11 65875937 65876250 -55967606 + B4 SINE B4 5 292 0 5 1087 361 152 28 19 chr11 65876253 65876360 -55967496 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 1087 603 247 152 41 chr11 65876556 65877052 -55966804 + L1ME1 LINE L1 5459 6014 -165 5 1087 468 0 0 0 chr11 65877386 65877438 -55966418 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1087 423 0 0 0 chr11 65877438 65877484 -55966372 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1087 279 264 157 18 chr11 65877595 65877761 -55966095 + Lx8 LINE L1 7281 7469 -4 5 1087 27 49 0 0 chr11 65877970 65878011 -55965845 + AT_rich Low_complexity Low_complexity 1 41 0 5 1087 240 100 0 0 chr11 65878408 65878448 -55965408 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1087 607 317 49 27 chr11 65878451 65879076 -55964780 + L1M4 LINE L1 5103 5790 -394 5 1087 604 283 0 64 chr11 65879629 65879833 -55964023 + B3A SINE B2 5 195 -3 5 1087 1020 83 0 0 chr11 65881247 65881404 -55962452 + (TCC)n Simple_repeat Simple_repeat 1 157 0 5 1087 297 162 0 0 chr11 65881426 65881494 -55962362 + CT-rich Low_complexity Low_complexity 1 68 0 5 1087 205 330 78 0 chr11 65882009 65882124 -55961732 - L2a LINE L2 -25 3401 3278 5 1087 237 98 0 0 chr11 65882446 65882487 -55961369 + (CAGT)n Simple_repeat Simple_repeat 4 44 0 5 1087 1692 152 72 27 chr11 65883236 65883567 -55960289 + ORR1B1 LTR MaLR 41 386 -8 5 1087 740 286 24 76 chr11 65883570 65883751 -55960105 + B4 SINE B4 28 211 -81 5 1087 555 62 0 0 chr11 65883751 65883831 -55960025 + (CAAAC)n Simple_repeat Simple_repeat 5 84 0 5 1087 740 286 24 76 chr11 65883831 65883899 -55959957 + B4 SINE B4 212 264 -28 5 1087 180 0 0 0 chr11 65883909 65883929 -55959927 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1087 257 269 15 0 chr11 65884986 65885053 -55958803 - B4 SINE B4 -224 68 1 5 1087 501 295 74 17 chr11 65885772 65886003 -55957853 - Tigger5 DNA MER2_type -2 2404 2161 5 1087 315 326 0 0 chr11 65885999 65886088 -55957768 - Tigger5 DNA MER2_type -2315 91 3 5 1087 26 0 0 0 chr11 65890728 65890754 -55953102 + AT_rich Low_complexity Low_complexity 1 26 0 5 1087 4823 62 0 5 chr11 65890926 65891523 -55952333 + L1Md_F2 LINE L1 5966 6559 -23 5 1087 230 125 21 0 chr11 65892126 65892174 -55951682 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1087 217 284 38 75 chr11 65892262 65892342 -55951514 + PB1D7 SINE Alu 43 119 -1 6 1087 433 294 116 64 chr11 65892355 65892744 -55951112 + L1MC4a LINE L1 5901 6309 -1573 6 1087 251 348 37 7 chr11 65892898 65893034 -55950822 + MER5A DNA MER1_type 50 189 0 6 1087 807 288 145 27 chr11 65893271 65893713 -55950143 - L1MA5 LINE L1 0 6300 5807 6 1087 378 0 0 0 chr11 65893845 65893887 -55949969 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1087 520 299 72 0 chr11 65894306 65894513 -55949343 + MER2 DNA MER2_type 123 344 -1 6 1087 3745 203 88 27 chr11 65895215 65896062 -55947794 + Lx9 LINE L1 6279 7177 -467 6 1087 288 370 51 63 chr11 65896083 65896415 -55947441 - Charlie1b DNA MER1_type -160 363 36 6 1087 246 169 16 48 chr11 65896474 65896536 -55947320 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 6 1087 258 299 11 0 chr11 65896657 65896744 -55947112 - MIR SINE MIR -98 164 77 6 1087 294 333 28 9 chr11 65897165 65897271 -55946585 + Tigger16a DNA Tigger 561 668 -265 6 1087 405 0 0 0 chr11 65897841 65897886 -55945970 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1087 420 20 0 0 chr11 65897941 65897990 -55945866 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1087 281 323 32 0 chr11 65899177 65899270 -55944586 + B1F1 SINE Alu 2 97 -52 6 1087 2105 181 25 5 chr11 65899533 65899926 -55943930 - MTC LTR MaLR 0 421 21 6 1087 556 198 103 11 chr11 65899926 65900006 -55943850 - MTC-int LTR MaLR 0 1258 1181 6 1087 360 0 0 0 chr11 65900006 65900046 -55943810 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1087 556 198 103 11 chr11 65900046 65900139 -55943717 - MTC-int LTR MaLR -78 1180 1071 6 1087 2410 136 10 8 chr11 65900143 65900535 -55943321 - Lx4B LINE L1 -906 6152 5760 6 1087 3489 166 29 31 chr11 65900534 65900955 -55942901 + Lx4B LINE L1 6172 6606 -452 6 1087 1023 102 0 13 chr11 65900955 65901104 -55942752 - B1_Mus1 SINE Alu 0 148 2 6 1087 3489 195 24 40 chr11 65901104 65901428 -55942428 + Lx4B LINE L1 6596 6984 -74 6 1087 425 248 28 49 chr11 65901474 65901618 -55942238 - MTC-int LTR MaLR -162 1096 956 6 1087 1187 215 0 0 chr11 65901621 65901863 -55941993 - MTC-int LTR MaLR -713 545 304 6 1087 597 234 8 8 chr11 65901859 65901988 -55941868 - MTC LTR MaLR -12 409 281 6 1087 1454 38 0 4 chr11 65902333 65902602 -55941254 + (CA)n Simple_repeat Simple_repeat 1 268 0 6 1087 269 295 0 0 chr11 65903250 65903311 -55940545 + B4A SINE B4 85 145 -147 6 1087 513 220 50 0 chr11 65903257 65903357 -55940499 + PB1D10 SINE Alu 7 111 -6 6 1087 633 27 0 0 chr11 65903516 65903591 -55940265 + (GA)n Simple_repeat Simple_repeat 1 75 0 6 1087 404 363 60 19 chr11 65904015 65904231 -55939625 + Tigger5 DNA MER2_type 20 244 -2162 6 1087 435 308 25 6 chr11 65906346 65906503 -55937353 - MER5B DNA MER1_type -1 177 18 6 1087 504 269 18 54 chr11 65906697 65906921 -55936935 + L1MA6 LINE L1 6045 6260 -40 6 1087 22 0 0 0 chr11 65907971 65907993 -55935863 + AT_rich Low_complexity Low_complexity 1 22 0 6 1087 297 0 0 0 chr11 65908100 65908133 -55935723 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1087 1264 206 90 3 chr11 65908133 65908444 -55935412 + MTD LTR MaLR 18 355 -64 6 1087 409 310 47 5 chr11 65909185 65909396 -55934460 + L1MC4a LINE L1 7647 7866 -16 6 1087 675 219 7 14 chr11 65909421 65909569 -55934287 + B1_Mur3 SINE Alu 2 148 -1 6 1087 489 110 0 0 chr11 65909641 65909714 -55934142 + (CATA)n Simple_repeat Simple_repeat 2 74 0 6 1087 474 18 0 0 chr11 65909714 65909768 -55934088 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1087 334 316 18 0 chr11 65909780 65909894 -55933962 + MIRb SINE MIR 81 196 -72 6 1087 221 362 101 16 chr11 65910483 65910671 -55933185 - L2 LINE L2 -650 2769 2566 6 1087 989 271 89 36 chr11 65910817 65911116 -55932740 + MTEa LTR MaLR 1 321 -58 6 1087 1285 166 0 9 chr11 65911116 65911341 -55932515 + URR1B DNA MER1_type 1 223 -2 6 1087 989 271 89 36 chr11 65911341 65911401 -55932455 + MTEa LTR MaLR 322 379 0 6 1087 382 353 0 0 chr11 65911480 65911596 -55932260 - PB1D10 SINE Alu 0 117 2 6 1087 461 307 30 85 chr11 65911522 65911610 -55932246 - ID_B1 SINE B4 -68 156 79 6 1087 198 0 0 0 chr11 65911610 65911632 -55932224 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 6 1087 461 307 30 85 chr11 65911632 65911707 -55932149 - ID SINE ID -146 78 2 6 1087 437 47 0 15 chr11 65911734 65911799 -55932057 - B1_Mus2 SINE Alu 0 147 84 6 1087 324 344 33 0 chr11 65911803 65911954 -55931902 - L2 LINE L2 -1125 2294 2139 6 1087 1677 118 97 10 chr11 65911962 65912261 -55931595 + ORR1B2 LTR MaLR 1 325 -42 6 1087 831 74 139 8 chr11 65912261 65912383 -55931473 + B1_Mus1 SINE Alu 2 139 -9 6 1087 300 119 0 0 chr11 65912397 65912456 -55931400 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1087 347 113 0 0 chr11 65912456 65912509 -55931347 + ORR1B2 LTR MaLR 324 376 -2 6 1087 456 306 24 0 chr11 65912815 65912939 -55930917 + B1F SINE Alu 1 127 -22 6 1087 260 155 52 0 chr11 65912937 65912995 -55930861 + B1F SINE Alu 68 128 -21 6 1087 399 21 0 0 chr11 65912996 65913044 -55930812 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1087 216 250 51 38 chr11 65913700 65913779 -55930077 + ID SINE ID 2 81 -143 6 1087 372 77 0 0 chr11 65913907 65913959 -55929897 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1087 270 299 68 15 chr11 65914348 65914544 -55929312 + L1M5 LINE L1 2249 2454 -3692 6 1087 322 306 181 46 chr11 65914997 65915892 -55927964 + L1M5 LINE L1 2995 4012 -2134 6 1087 230 241 24 18 chr11 65915895 65916067 -55927789 + (CA)n Simple_repeat Simple_repeat 1 173 0 6 1087 462 285 35 15 chr11 65916161 65916364 -55927492 + L1M5 LINE L1 4126 4332 -1814 6 1087 393 259 107 69 chr11 65916523 65916739 -55927117 + L1M5 LINE L1 4541 4764 -1382 6 1087 1003 167 9 85 chr11 65916990 65917213 -55926643 + RLTR20D LTR ERVK 1 206 -362 6 1087 256 224 214 0 chr11 65917226 65917324 -55926532 + RLTR20D LTR ERVK 450 568 0 6 1087 591 298 75 29 chr11 65917324 65917604 -55926252 - MER2 DNA MER2_type -51 294 2 6 1087 425 274 118 40 chr11 65917809 65917961 -55925895 - B3 SINE B2 -48 168 5 6 1087 329 336 139 56 chr11 65918565 65919192 -55924664 - L2 LINE L2 -2303 1116 438 6 1087 723 81 0 0 chr11 65919202 65919301 -55924555 + (TATTG)n Simple_repeat Simple_repeat 5 103 0 6 1087 241 306 149 8 chr11 65919850 65920025 -55923831 + MER74A LTR ERVL 111 309 -313 6 1087 346 241 92 9 chr11 65920010 65920119 -55923737 + MER74A LTR ERVL 257 374 -184 6 1087 396 0 0 0 chr11 65923102 65923146 -55920710 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1087 552 42 0 0 chr11 65924058 65924129 -55919727 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1087 400 308 30 0 chr11 65924129 65924262 -55919594 - B1F SINE Alu -9 140 4 6 1087 508 143 0 16 chr11 65926362 65926490 -55917366 + CT-rich Low_complexity Low_complexity 1 126 0 6 1087 353 316 0 49 chr11 65927127 65927236 -55916620 + PB1D10 SINE Alu 1 105 -12 6 1087 200 34 0 33 chr11 65927236 65927266 -55916590 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 6 1087 353 316 0 49 chr11 65927266 65927279 -55916577 + PB1D10 SINE Alu 106 117 0 6 1087 418 284 120 47 chr11 65927280 65927711 -55916145 + L1MEg LINE L1 1331 1946 -4532 6 1087 288 0 0 0 chr11 65927720 65927752 -55916104 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1087 497 288 111 66 chr11 65928295 65928600 -55915256 - MTE2b LTR MaLR -95 324 3 6 1087 524 15 15 0 chr11 65928927 65928992 -55914864 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1087 463 294 35 35 chr11 65928992 65929150 -55914706 + B3A SINE B2 16 174 -24 6 135 315 337 38 38 chr11 65929185 65929370 -55914486 + L1MEg LINE L1 2454 2638 -3744 6 1088 1216 68 0 0 chr11 65929391 65929539 -55914317 - B1_Mus1 SINE Alu 0 148 1 6 1088 414 314 138 32 chr11 65929540 65930088 -55913768 + L1M4 LINE L1 2387 3000 -3146 6 1088 1971 218 66 9 chr11 65933380 65933908 -55909948 + RLTR12B LTR ERVK 1 568 0 6 1088 216 0 0 0 chr11 65934568 65934592 -55909264 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1088 492 62 0 0 chr11 65935990 65936054 -55907802 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6 1088 387 0 0 0 chr11 65936054 65936096 -55907760 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 6 1088 252 0 0 0 chr11 65936229 65936257 -55907599 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1088 320 229 157 0 chr11 65936966 65937049 -55906807 - B3 SINE B2 -4 212 117 6 1088 325 276 32 96 chr11 65937340 65937366 -55906490 + CYRA11_Mm Unknown Y-chromosome 145 158 -459 6 1088 955 156 0 131 chr11 65937366 65937587 -55906269 - URR1A DNA MER1_type 0 226 35 6 1088 360 0 0 0 chr11 65938543 65938583 -55905273 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1088 183 300 49 20 chr11 65938895 65938997 -55904859 - MER5B DNA MER1_type -65 113 9 6 1088 189 229 62 0 chr11 65939005 65939053 -55904803 + MIR SINE MIR 91 141 -67 6 1088 228 341 89 24 chr11 65939177 65939345 -55904511 + MER102a DNA MER1_type 46 224 -106 6 1088 352 267 7 18 chr11 65940477 65940593 -55903263 - PB1D10 SINE Alu -3 114 3 6 1088 824 164 180 0 chr11 65940986 65941175 -55902681 - URR1B DNA MER1_type -2 223 1 6 1088 1058 135 0 6 chr11 65941289 65941468 -55902388 + (GA)n Simple_repeat Simple_repeat 1 178 0 6 1088 459 0 0 0 chr11 65942025 65942076 -55901780 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1088 745 290 104 32 chr11 65942080 65942329 -55901527 - B4 SINE B4 -23 269 3 6 1088 200 386 90 15 chr11 65943383 65943517 -55900339 - L3 LINE CR1 -103 4386 4243 6 1088 1546 236 29 24 chr11 65944315 65944732 -55899124 - MTD LTR MaLR 0 419 1 6 1088 304 250 40 40 chr11 65945063 65945163 -55898693 + MER53 DNA hAT 5 104 -89 6 1088 556 282 96 33 chr11 65945304 65945492 -55898364 - B3A SINE B2 -4 212 35 6 1088 512 155 23 29 chr11 65945647 65945820 -55898036 + (TA)n Simple_repeat Simple_repeat 2 173 0 6 1088 768 245 64 123 chr11 65946235 65946431 -55897425 - L1MA9 LINE L1 0 6312 6149 6 1088 432 0 0 0 chr11 65946431 65946479 -55897377 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1088 768 245 64 123 chr11 65946479 65946720 -55897136 - L1MA9 LINE L1 -164 6148 5901 6 1088 321 198 174 11 chr11 65947530 65947622 -55896234 + B1F2 SINE Alu 1 107 -42 6 1088 461 92 13 0 chr11 65948189 65948265 -55895591 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1088 324 102 0 0 chr11 65948634 65948683 -55895173 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1088 785 264 57 52 chr11 65948813 65949162 -55894694 + L1MA5 LINE L1 5026 5368 -1076 6 1088 934 275 187 25 chr11 65949549 65950143 -55893713 + L1MA5 LINE L1 5386 6075 -225 6 1088 3063 49 0 0 chr11 65950205 65950573 -55893283 - L1_Mus1 LINE L1 -565 6002 5635 6 1088 4543 57 4 0 chr11 65950573 65951134 -55892722 + L1_Mus1 LINE L1 6005 6567 0 6 1088 182 118 29 0 chr11 65951137 65951171 -55892685 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 6 1088 281 239 28 0 chr11 65951204 65951275 -55892581 + L1MA5 LINE L1 6192 6264 -36 6 1088 465 268 18 0 chr11 65951393 65951505 -55892351 + PB1D10 SINE Alu 2 115 -2 6 1088 3159 148 19 19 chr11 65951934 65952466 -55891390 + Lx2B LINE L1 6456 6987 -13 7 1088 248 215 46 0 chr11 65953263 65953328 -55890528 + L3 LINE CR1 4302 4369 -120 7 1088 256 355 28 0 chr11 65953638 65953745 -55890111 + MIRb SINE MIR 64 173 -95 7 1088 1119 199 18 13 chr11 65954761 65954985 -55888871 + URR1B DNA MER1_type 1 225 0 7 1088 188 141 30 45 chr11 65955153 65955220 -55888636 + GA-rich Low_complexity Low_complexity 2 67 0 7 1088 839 204 83 53 chr11 65957344 65957572 -55886284 + Lx9 LINE L1 6959 7193 -451 7 1088 303 28 0 0 chr11 65957790 65957826 -55886030 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 1088 27 29 0 0 chr11 65957864 65957898 -55885958 + AT_rich Low_complexity Low_complexity 1 34 0 7 1088 499 317 71 103 chr11 65958358 65958668 -55885188 + ORR1E LTR MaLR 1 300 -59 7 1088 318 297 58 17 chr11 65959925 65960045 -55883811 + PB1 SINE Alu 1 125 -2 7 1088 211 350 66 8 chr11 65960286 65960407 -55883449 - MIRm SINE MIR -140 136 9 7 1088 1620 188 162 3 chr11 65961171 65961529 -55882327 - MTC LTR MaLR 0 421 7 7 1088 360 0 0 0 chr11 65962822 65962862 -55880994 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1088 915 286 168 17 chr11 65962999 65963276 -55880580 - Lx9 LINE L1 -790 6683 6368 7 1088 2772 83 43 30 chr11 65963276 65963671 -55880185 + MTB LTR MaLR 1 400 0 7 1088 915 286 168 17 chr11 65963671 65963805 -55880051 - Lx9 LINE L1 -1106 6367 6210 7 1088 2031 250 80 167 chr11 65963836 65964208 -55879648 - Lx9 LINE L1 -1684 5960 5572 7 1088 836 123 7 28 chr11 65964208 65964350 -55879506 - B1_Mur4 SINE Alu -1 149 11 7 1088 2031 250 80 167 chr11 65964350 65965197 -55878659 - Lx9 LINE L1 -1684 5571 4685 7 1088 504 325 66 73 chr11 65965232 65965521 -55878335 - B4A SINE B4 0 292 6 7 1088 21 0 0 0 chr11 65965559 65965580 -55878276 + AT_rich Low_complexity Low_complexity 1 21 0 7 1088 690 275 126 3 chr11 65965879 65966164 -55877692 + MLT1A1 LTR MaLR 24 343 -65 7 1088 303 273 128 13 chr11 65966399 65966555 -55877301 - MamRep1161 DNA TcMar -405 552 379 7 1088 198 0 0 0 chr11 65966759 65966781 -55877075 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1088 316 354 8 23 chr11 65967021 65967151 -55876705 - MER2 DNA MER2_type -6 339 212 7 1088 224 343 122 47 chr11 65967162 65967269 -55876587 - PB1D10 SINE Alu -1 116 2 7 1088 390 305 38 0 chr11 65967839 65967970 -55875886 + B1F SINE Alu 1 136 -13 7 1088 194 0 0 37 chr11 65967971 65967998 -55875858 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1088 729 226 181 0 chr11 65969827 65970004 -55873852 + B3 SINE B2 2 210 -6 7 1088 259 252 86 17 chr11 65970541 65970658 -55873198 - MLT1A1 LTR MaLR -7 401 277 7 1088 225 290 0 0 chr11 65971011 65971073 -55872783 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1088 727 285 123 8 chr11 65971085 65971329 -55872527 - B4A SINE B4 -6 286 15 7 1088 409 198 8 8 chr11 65971745 65971867 -55871989 + (CA)n Simple_repeat Simple_repeat 2 123 0 7 1088 330 358 22 0 chr11 65972666 65972803 -55871053 + B1F1 SINE Alu 7 146 -3 7 1088 315 208 12 83 chr11 65973565 65973649 -55870207 + PB1D10 SINE Alu 40 117 0 7 1088 3207 274 78 18 chr11 65973650 65974207 -55869649 + Lx8 LINE L1 6197 6790 -683 7 1088 1531 210 44 16 chr11 65974207 65974570 -55869286 + ORR1D1 LTR MaLR 2 374 0 7 1088 3207 274 78 18 chr11 65974570 65974885 -55868971 + Lx8 LINE L1 6791 7121 -352 7 1088 198 150 0 0 chr11 65974888 65974928 -55868928 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1088 221 191 29 37 chr11 65975050 65975159 -55868697 + GA-rich Low_complexity Low_complexity 1 108 0 7 1088 867 316 83 7 chr11 65975205 65975641 -55868215 + LTR53 LTR ERVL 33 501 -18 7 1088 2263 184 22 30 chr11 65975728 65976231 -55867625 + RLTR11A2 LTR ERVK 1 499 -28 7 1088 395 317 33 0 chr11 65977741 65977861 -55865995 - B1F SINE Alu -15 134 11 7 1088 1183 190 19 0 chr11 65977904 65978115 -55865741 - B3 SINE B2 0 216 2 7 1088 1427 234 35 6 chr11 65978223 65978562 -55865294 - MTD LTR MaLR 0 419 71 7 1088 233 278 102 0 chr11 65978564 65978672 -55865184 + L1MB2 LINE L1 5772 5890 -278 7 1088 201 309 60 0 chr11 65978954 65979038 -55864818 - L2 LINE L2 -2562 857 769 7 1088 247 301 84 51 chr11 65979048 65979321 -55864535 + L1MB2 LINE L1 5888 6169 -2 7 1088 234 58 37 37 chr11 65979424 65979478 -55864378 + (CAAAAA)n Simple_repeat Simple_repeat 6 59 0 7 1088 521 244 8 54 chr11 65979491 65979621 -55864235 + ID_B1 SINE B4 93 216 -8 7 1088 552 68 0 0 chr11 65979637 65979710 -55864146 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1088 459 274 62 31 chr11 65979730 65979922 -55863934 - B3A SINE B2 0 198 1 7 1088 230 0 0 32 chr11 65980033 65980064 -55863792 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 7 1088 482 269 58 96 chr11 65980075 65980231 -55863625 - B3A SINE B2 -23 175 21 7 1088 22 35 0 0 chr11 65982541 65982570 -55861286 + AT_rich Low_complexity Low_complexity 1 29 0 7 1088 303 203 0 0 chr11 65983274 65983343 -55860513 + CT-rich Low_complexity Low_complexity 4 72 0 7 1088 336 344 92 7 chr11 65983542 65983694 -55860162 + B4 SINE B4 7 171 -121 7 1088 320 352 57 35 chr11 65983934 65984161 -55859695 - MLT1F LTR MaLR -67 481 250 7 1088 342 0 0 0 chr11 65984174 65984212 -55859644 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1088 907 181 70 38 chr11 65984219 65984432 -55859424 - Lx9 LINE L1 -183 7461 7242 7 1088 245 188 12 36 chr11 65984482 65984493 -55859363 + (TA)n Simple_repeat Simple_repeat 1 11 0 7 1088 3085 71 8 2 chr11 65984493 65984887 -55858969 - MTA_Mm LTR MaLR 0 396 1 7 1088 245 188 12 36 chr11 65984887 65984958 -55858898 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1088 217 349 44 11 chr11 65984961 65985067 -55858789 + B1F SINE Alu 12 120 0 7 1088 318 292 85 0 chr11 65985096 65985202 -55858654 + ID_B1 SINE B4 102 216 -8 7 1088 297 0 0 0 chr11 65985614 65985647 -55858209 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1088 288 0 0 0 chr11 65985649 65985681 -55858175 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1088 1481 138 103 126 chr11 65986041 65986222 -55857634 + ORR1C2 LTR MaLR 1 169 -215 7 1088 387 0 0 0 chr11 65986222 65986265 -55857591 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 7 1088 1481 138 103 126 chr11 65986265 65986473 -55857383 + ORR1C2 LTR MaLR 170 380 -4 7 1088 5598 202 80 16 chr11 65986475 65987763 -55856093 + ORR1C2-int LTR MaLR 1 1370 0 7 1088 1378 216 101 57 chr11 65987763 65988131 -55855725 + ORR1C2 LTR MaLR 1 384 0 7 1088 677 312 59 22 chr11 65988707 65989054 -55854802 + MTD LTR MaLR 1 356 -63 7 1088 2897 278 96 62 chr11 65989238 65992039 -55851817 - Lx8 LINE L1 -172 7301 4375 7 1088 648 291 38 25 chr11 65992074 65992242 -55851614 - Lx8 LINE L1 -3456 2424 2253 7 1088 4357 63 18 0 chr11 65992242 65992796 -55851060 - L1_Mus1 LINE L1 0 6567 6004 7 1088 648 308 35 31 chr11 65992796 65992889 -55850967 - Lx8 LINE L1 -3866 2277 2187 7 1088 294 50 0 0 chr11 65992917 65992957 -55850899 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1088 308 318 0 64 chr11 65993198 65993339 -55850517 - Lx7 LINE L1 -821 6875 6744 7 1088 886 281 120 57 chr11 65993339 65993898 -55849958 + Lx8 LINE L1 6879 7472 -1 7 1088 2910 99 10 17 chr11 65994490 65994900 -55848956 + MTB_Mm LTR MaLR 1 407 0 7 1088 326 257 52 17 chr11 65995311 65995426 -55848430 + B1F SINE Alu 31 149 0 7 1088 241 290 0 0 chr11 65995729 65995798 -55848058 - L1M6 LINE L1 -4860 1636 1568 7 1088 505 40 26 0 chr11 65995798 65995874 -55847982 + (GA)n Simple_repeat Simple_repeat 2 79 0 7 1088 405 0 0 0 chr11 65996284 65996329 -55847527 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1088 450 169 0 102 chr11 65996605 65996802 -55847054 + RMER17C LTR ERVK 97 273 -137 7 1088 219 324 14 0 chr11 65996852 65996923 -55846933 + ID4 SINE ID 1 72 -11 7 1088 436 313 0 0 chr11 65997354 65997469 -55846387 + PB1D10 SINE Alu 2 116 -1 7 1088 712 230 0 20 chr11 65998107 65998258 -55845598 - B1F SINE Alu -1 148 1 7 1088 531 0 0 0 chr11 65998766 65998825 -55845031 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1088 990 176 20 55 chr11 66000017 66000216 -55843640 + B3 SINE B2 1 192 -24 1 1088 225 0 0 0 chr11 66000223 66000248 -55843608 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1088 333 0 0 0 chr11 66000423 66000460 -55843396 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1088 417 223 58 10 chr11 66000702 66000806 -55843050 + PB1D10 SINE Alu 3 111 -6 4 1088 189 195 0 0 chr11 66000806 66000847 -55843009 + GA-rich Low_complexity Low_complexity 1 41 0 5 1088 260 257 0 0 chr11 66001092 66001162 -55842694 + MER5A DNA MER1_type 30 99 -90 6 1088 676 285 103 7 chr11 66001402 66001692 -55842164 - MER89 LTR ERV1 -5 554 237 7 1088 1138 243 112 37 chr11 66001692 66002068 -55841788 + MLT2B1 LTR ERVL 1 404 -116 8 1088 842 267 10 35 chr11 66002470 66002672 -55841184 + B3A SINE B2 2 198 0 9 1088 212 200 19 57 chr11 66002828 66002881 -55840975 - MIRb SINE MIR -88 180 130 1 1088 240 252 38 28 chr11 66003172 66003278 -55840578 - L1MA10 LINE L1 -36 6298 6192 1 1088 772 313 64 61 chr11 66003334 66003594 -55840262 - L1ME2 LINE L1 -234 5945 5690 1 1088 460 252 78 39 chr11 66003594 66003747 -55840109 - RSINE1 SINE B4 -6 159 1 1 1088 772 313 64 61 chr11 66003747 66004047 -55839809 - L1ME2 LINE L1 -489 5690 5383 1 1088 319 293 112 118 chr11 66004038 66004359 -55839497 - Lx8 LINE L1 -1 7472 7154 1 1088 351 266 11 11 chr11 66004360 66004455 -55839401 - B1F1 SINE Alu -50 99 5 1 1088 184 314 47 19 chr11 66004461 66004568 -55839288 - MIR SINE MIR -44 218 109 1 1088 206 167 0 69 chr11 66005737 66005795 -55838061 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 1 1088 1166 221 160 94 chr11 66006084 66006508 -55837348 + MT2A LTR ERVL 1 452 -81 1 1088 36907 67 2 13 chr11 66006508 66012688 -55831168 - L1Md_F2 LINE L1 0 6582 476 1 1088 43 64 0 0 chr11 66012709 66012787 -55831069 + AT_rich Low_complexity Low_complexity 1 78 0 2 1088 193 86 50 33 chr11 66012793 66012853 -55831003 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1088 1190 35 0 7 chr11 66012856 66012998 -55830858 - B1_Mm SINE Alu -5 142 2 2 1088 26 30 0 0 chr11 66013025 66013058 -55830798 + AT_rich Low_complexity Low_complexity 1 33 0 2 1088 375 87 85 24 chr11 66013062 66013227 -55830629 + (TA)n Simple_repeat Simple_repeat 1 175 0 2 1088 253 197 14 108 chr11 66013339 66013413 -55830443 + MLT2B5 LTR ERVL 489 555 0 2 1088 246 302 10 20 chr11 66013430 66013528 -55830328 - PB1D7 SINE Alu 0 120 24 2 1088 2313 193 63 76 chr11 66013553 66014105 -55829751 + RLTR25B LTR ERVK 1 551 -477 2 1088 3352 53 2 0 chr11 66014105 66014500 -55829356 - MTA_Mm LTR MaLR 0 396 1 2 1088 2313 193 63 76 chr11 66014500 66014552 -55829304 + RLTR25B LTR ERVK 552 597 -431 2 1088 256 61 0 0 chr11 66014528 66014561 -55829295 + RLTR25B LTR ERVK 450 482 -546 2 1088 4516 73 31 25 chr11 66014670 66015316 -55828540 - L1Md_F2 LINE L1 0 6582 5933 2 1088 599 208 27 27 chr11 66015366 66015514 -55828342 + RLTR25A LTR ERVK 956 1103 0 3 1088 1238 252 81 9 chr11 66015568 66015912 -55827944 + MTD LTR MaLR 51 419 0 3 1088 2105 220 36 18 chr11 66016267 66016343 -55827513 - RMER20A LTR ERVK 0 516 440 3 1088 270 0 0 0 chr11 66016343 66016373 -55827483 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1088 2105 220 36 18 chr11 66016373 66016791 -55827065 - RMER20A LTR ERVK -77 439 13 3 1088 4030 119 46 1 chr11 66016969 66017618 -55826238 - RLTR33 LTR ERVK 0 678 1 3 1088 591 267 28 5 chr11 66018311 66018522 -55825334 + Charlie1b DNA MER1_type 169 384 -139 3 1088 899 196 26 66 chr11 66018535 66018808 -55825048 - L1MA6 LINE L1 -2 6298 6037 3 1088 259 259 52 22 chr11 66018809 66018943 -55824913 + Charlie1b DNA MER1_type 373 510 -13 3 1088 367 333 74 11 chr11 66020334 66020510 -55823346 + MLT1G3 LTR MaLR 225 411 -184 3 1088 308 253 67 0 chr11 66020622 66020697 -55823159 + ID4_ SINE ID 3 82 -1 3 1088 325 380 70 4 chr11 66021296 66021552 -55822304 + MLT1I LTR MaLR 4 276 -135 3 1088 366 336 20 27 chr11 66022702 66022852 -55821004 + B1F SINE Alu 1 149 0 4 1088 249 234 0 0 chr11 66023273 66023320 -55820536 + PB1D10 SINE Alu 25 71 -46 4 1088 246 247 47 85 chr11 66023320 66023379 -55820477 + ID_B1 SINE B4 106 207 -17 4 1088 204 175 0 0 chr11 66023391 66023454 -55820402 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1088 615 224 0 0 chr11 66023458 66023637 -55820219 + GA-rich Low_complexity Low_complexity 2 180 0 4 1088 261 0 0 0 chr11 66024196 66024225 -55819631 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 4 1088 337 265 87 58 chr11 66024228 66024332 -55819524 - PB1D10 SINE Alu -10 107 1 4 1088 489 287 0 17 chr11 66024943 66025060 -55818796 - PB1D10 SINE Alu -1 116 2 4 1088 540 309 33 16 chr11 66026478 66026662 -55817194 - MIR3 SINE MIR -7 201 15 4 1088 949 253 82 22 chr11 66028052 66028371 -55815485 - MER44A DNA MER2_type -1 338 1 4 1088 348 94 0 0 chr11 66028616 66028669 -55815187 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 5 1088 360 0 0 0 chr11 66029451 66029491 -55814365 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1088 188 135 0 26 chr11 66030911 66030949 -55812907 + (CCCTG)n Simple_repeat Simple_repeat 4 40 0 5 1088 186 43 0 0 chr11 66031928 66031951 -55811905 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1088 435 38 0 0 chr11 66032767 66032820 -55811036 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1088 1587 213 32 35 chr11 66033849 66034253 -55809603 + MTD LTR MaLR 9 411 -8 5 1088 196 175 53 0 chr11 66034280 66034337 -55809519 + GA-rich Low_complexity Low_complexity 3 62 0 5 1088 537 194 0 0 chr11 66034348 66034441 -55809415 + B1_Mus2 SINE Alu 53 145 -2 5 1088 279 0 0 0 chr11 66034618 66034649 -55809207 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1088 423 98 0 0 chr11 66034649 66034709 -55809147 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1088 1229 115 6 0 chr11 66034709 66034892 -55808964 - Lx2 LINE L1 -10 6987 6804 6 1088 483 18 0 0 chr11 66035376 66035432 -55808424 + (GGA)n Simple_repeat Simple_repeat 2 57 0 6 1088 236 265 29 0 chr11 66037518 66037586 -55806270 - ID4 SINE ID 0 83 14 6 1088 278 296 48 34 chr11 66037588 66037735 -55806121 - B1F SINE Alu 0 149 1 6 1088 360 0 0 0 chr11 66038643 66038683 -55805173 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 6 1088 215 265 30 20 chr11 66039937 66040037 -55803819 + GA-rich Low_complexity Low_complexity 2 102 0 6 1088 294 273 26 13 chr11 66040057 66040135 -55803721 + PB1D10 SINE Alu 23 101 -16 6 1088 238 289 33 22 chr11 66040419 66040511 -55803345 - L1MA5 LINE L1 -20 6280 6188 6 1088 563 232 89 11 chr11 66040628 66040807 -55803049 - L1MA5 LINE L1 -271 6029 5837 6 1088 468 0 0 0 chr11 66041175 66041227 -55802629 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1088 219 69 0 0 chr11 66041227 66041255 -55802601 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1088 335 98 16 0 chr11 66041275 66041336 -55802520 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1088 21 0 0 0 chr11 66041568 66041589 -55802267 + AT_rich Low_complexity Low_complexity 1 21 0 7 1088 347 0 23 0 chr11 66042241 66042284 -55801572 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1088 513 58 0 0 chr11 66042547 66042616 -55801240 + (TTCA)n Simple_repeat Simple_repeat 2 70 0 7 1088 431 236 22 0 chr11 66042671 66042760 -55801096 + B3A SINE B2 10 100 -98 7 1088 537 16 0 0 chr11 66042769 66042831 -55801025 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1088 245 82 0 20 chr11 66042835 66042885 -55800971 + B3 SINE B2 167 215 -1 7 1088 711 367 57 28 chr11 66043074 66043955 -55799901 - L1M5 LINE L1 -3020 3126 2221 7 1088 405 0 0 0 chr11 66043967 66044012 -55799844 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1088 441 0 0 0 chr11 66044012 66044060 -55799796 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1088 248 333 0 0 chr11 66044244 66044319 -55799537 - ID2 SINE ID -4 79 5 8 1088 324 0 0 0 chr11 66044618 66044654 -55799202 + (TTTCC)n Simple_repeat Simple_repeat 4 39 0 8 1088 347 327 92 32 chr11 66044664 66044882 -55798974 - Ricksha_c DNA MuDR -1390 658 428 8 1088 228 35 0 0 chr11 66048576 66048605 -55795251 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1088 2898 158 14 47 chr11 66049568 66050118 -55793738 - Lx4B LINE L1 0 7058 6527 8 1088 594 231 30 8 chr11 66050178 66050309 -55793547 - B3 SINE B2 -9 207 74 8 1088 399 297 53 26 chr11 66050307 66050459 -55793397 + MT2B2 LTR ERVL 169 324 -260 8 1088 396 138 0 0 chr11 66050595 66050660 -55793196 + (TA)n Simple_repeat Simple_repeat 1 65 0 8 1088 546 220 0 0 chr11 66050781 66050958 -55792898 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1088 321 302 22 39 chr11 66051238 66051417 -55792439 - L1MA7 LINE L1 -7 6284 6109 8 1088 791 179 7 40 chr11 66051417 66051568 -55792288 + B1_Mus1 SINE Alu 2 147 -1 9 1088 1494 40 0 0 chr11 66051617 66051996 -55791860 + (TGG)n Simple_repeat Simple_repeat 1 379 0 9 1088 227 222 13 77 chr11 66052005 66052083 -55791773 - L1MA7 LINE L1 -170 6121 6049 8 1088 183 368 75 0 chr11 66052172 66052305 -55791551 - MIR SINE MIR -47 215 73 9 1088 302 273 9 57 chr11 66054234 66054339 -55789517 - PB1D10 SINE Alu -15 102 3 9 1088 392 0 0 20 chr11 66054573 66054622 -55789234 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1088 221 378 0 0 chr11 66055020 66055094 -55788762 - ID4 SINE ID -2 81 8 9 1088 232 350 12 12 chr11 66055547 66055628 -55788228 + ID4_ SINE ID 2 82 -1 9 1088 522 0 0 0 chr11 66055694 66055752 -55788104 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 1088 2220 110 28 0 chr11 66055940 66056258 -55787598 + ORR1A2 LTR MaLR 1 327 0 9 1088 10201 146 71 17 chr11 66056259 66058120 -55785736 + ORR1A2-int LTR MaLR 2 1963 0 9 1088 2391 90 6 6 chr11 66058128 66058451 -55785405 + ORR1A2 LTR MaLR 5 327 0 9 1088 234 284 45 45 chr11 66058452 66058585 -55785271 + L4 LINE RTE 124 256 -1773 9 1088 257 271 14 28 chr11 66059876 66059948 -55783908 - ID4_ SINE ID -11 72 2 1 1089 21 36 0 0 chr11 66061056 66061084 -55782772 + AT_rich Low_complexity Low_complexity 1 28 0 1 1089 2302 165 10 2 chr11 66061490 66061891 -55781965 + MTC LTR MaLR 1 404 -17 1 1089 334 316 80 33 chr11 66063024 66063237 -55780619 - L2 LINE L2 -905 2514 2292 1 1089 23 33 0 0 chr11 66063610 66063640 -55780216 + AT_rich Low_complexity Low_complexity 1 30 0 1 1089 421 352 116 0 chr11 66063978 66064228 -55779628 + MER2 DNA MER2_type 6 284 -61 1 1089 254 247 69 0 chr11 66064295 66064370 -55779486 - L1M3 LINE L1 -417 5766 5690 1 1089 182 328 25 25 chr11 66064638 66064757 -55779099 - L2 LINE L2 -1879 1540 1422 1 1089 207 211 39 0 chr11 66064869 66064921 -55778935 - MER5B DNA MER1_type -86 92 39 1 1089 769 237 30 26 chr11 66065098 66065332 -55778524 + L1MA7 LINE L1 6056 6290 -1 1 1089 244 333 19 19 chr11 66065389 66065493 -55778363 - L2 LINE L2 -2010 1409 1306 1 1089 270 0 0 0 chr11 66065504 66065534 -55778322 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1089 405 0 0 0 chr11 66065845 66065890 -55777966 + (CCA)n Simple_repeat Simple_repeat 2 46 0 1 1089 241 298 18 71 chr11 66066022 66066134 -55777722 + PB1D7 SINE Alu 3 108 -12 1 1089 629 58 12 0 chr11 66066134 66066220 -55777636 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 1 1089 260 324 87 22 chr11 66068033 66068216 -55775640 + LTR16A1 LTR ERVL 262 456 0 1 1089 651 46 0 0 chr11 66068495 66068582 -55775274 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1089 259 333 75 15 chr11 66068677 66068811 -55775045 - LTR16E1 LTR ERVL -190 348 207 1 1089 191 103 0 25 chr11 66069334 66069374 -55774482 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1089 231 339 108 12 chr11 66069415 66069582 -55774274 + MamRep605 Unknown Unknown 637 819 -57 1 1089 3317 154 40 19 chr11 66071448 66072077 -55771779 + RLTR26 LTR ERVK 1 642 0 1 1089 209 57 29 0 chr11 66073231 66073266 -55770590 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1089 324 70 0 0 chr11 66073268 66073311 -55770545 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1089 301 341 29 22 chr11 66076082 66076220 -55767636 + MIR3 SINE MIR 51 189 -19 1 1089 224 285 165 23 chr11 66077178 66077354 -55766502 + MIRb SINE MIR 37 237 -31 1 1089 325 242 55 0 chr11 66077442 66077533 -55766323 + Charlie5 DNA MER1_type 20 115 -2509 1 1089 343 226 196 0 chr11 66080315 66080417 -55763439 - B1F SINE Alu -10 139 18 1 1089 199 115 0 55 chr11 66080434 66080489 -55763367 + T-rich Low_complexity Low_complexity 2 53 0 1 1089 472 284 24 87 chr11 66082932 66083140 -55760716 - MER20 DNA MER1_type -24 195 1 1 1089 195 227 43 43 chr11 66083272 66083341 -55760515 + MIRb SINE MIR 131 199 -69 1 1089 282 312 86 14 chr11 66085769 66085909 -55757947 - MER58B DNA MER1_type 0 341 192 1 1089 540 253 111 60 chr11 66086455 66086759 -55757097 + L1MA6 LINE L1 5809 6145 -155 1 1089 236 263 170 10 chr11 66086759 66086859 -55756997 - PB1D10 SINE Alu 0 117 2 1 1089 540 253 111 60 chr11 66086859 66086907 -55756949 + L1MA6 LINE L1 6146 6179 -121 1 1089 256 327 164 0 chr11 66086911 66087015 -55756841 + MER2B DNA MER2_type 201 321 -15 1 1089 195 327 93 28 chr11 66087118 66087225 -55756631 - L2c LINE L2 -31 3356 3243 1 1089 305 198 12 0 chr11 66089283 66089364 -55754492 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1 1089 2375 209 33 6 chr11 66091141 66091661 -55752195 - RMER5 LTR ERV1 0 534 1 1 1089 267 173 0 0 chr11 66092146 66092198 -55751658 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 1 1089 827 287 61 46 chr11 66092203 66092597 -55751259 + L1MC1 LINE L1 1308 1707 -4801 1 1089 260 111 0 22 chr11 66092691 66092737 -55751119 + (CCCCCA)n Simple_repeat Simple_repeat 2 46 0 1 1089 2526 258 112 18 chr11 66092786 66092861 -55750995 + L1MC1 LINE L1 2579 2659 -3662 1 1089 606 93 0 0 chr11 66092861 66092947 -55750909 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1089 2526 258 112 18 chr11 66092947 66093861 -55749995 + L1MC1 LINE L1 2660 3661 -2660 1 1089 1661 293 43 19 chr11 66093860 66094438 -55749418 + Lx8 LINE L1 6523 7114 -359 1 1089 390 298 24 85 chr11 66094458 66094623 -55749233 + Lx8 LINE L1 7173 7327 -146 1 1089 345 144 33 0 chr11 66094626 66094716 -55749140 + GA-rich Low_complexity Low_complexity 2 94 0 1 1089 251 247 0 58 chr11 66094750 66094836 -55749020 + Lx8 LINE L1 7393 7473 0 1 1089 693 204 117 14 chr11 66094828 66095042 -55748814 + L1MC1 LINE L1 3655 3890 -2431 1 1089 323 303 0 0 chr11 66095039 66095148 -55748708 + L1M3 LINE L1 5098 5206 -934 1 1089 375 78 0 0 chr11 66095188 66095239 -55748617 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1089 1077 270 57 57 chr11 66095280 66095739 -55748117 + L1_Mur3 LINE L1 5356 5814 -66 1 1089 1847 248 47 39 chr11 66096445 66097084 -55746772 + L1MC1 LINE L1 3859 4502 -1819 1 1089 828 283 12 12 chr11 66097088 66097328 -55746528 + B4A SINE B4 5 244 -48 1 1089 894 297 69 75 chr11 66097411 66098023 -55745833 + L1MC1 LINE L1 4502 5109 -1212 1 1089 228 200 0 0 chr11 66098230 66098280 -55745576 + RLTR20A2 LTR ERVK 107 156 -422 1 1089 978 53 0 0 chr11 66098546 66098677 -55745179 + B1_Mm SINE Alu 16 146 -1 1 1089 855 260 79 15 chr11 66098703 66098890 -55744966 + L1MC1 LINE L1 5106 5295 -1026 1 1089 195 42 0 0 chr11 66098890 66098914 -55744942 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1089 855 260 79 15 chr11 66098914 66099069 -55744787 + L1MC1 LINE L1 5296 5469 -852 1 1089 524 257 67 7 chr11 66099126 66099276 -55744580 + B3 SINE B2 10 167 -49 1 1089 489 62 0 0 chr11 66099276 66099341 -55744515 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1089 448 258 59 43 chr11 66099341 66099376 -55744480 + B3A SINE B2 167 198 0 1 1089 1461 273 193 15 chr11 66099392 66100211 -55743645 + L1MC1 LINE L1 5489 6453 -55 1 1089 799 250 83 0 chr11 66101978 66102206 -55741650 - MLT1D LTR MaLR -7 498 252 1 1089 193 308 12 25 chr11 66104537 66104617 -55739239 + L2a LINE L2 3348 3426 0 1 1089 528 16 0 0 chr11 66105131 66105192 -55738664 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1089 363 349 95 18 chr11 66105451 66105673 -55738183 + MLT1D LTR MaLR 267 505 0 1 1089 351 44 0 0 chr11 66106808 66106853 -55737003 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1089 194 316 134 75 chr11 66107768 66108127 -55735729 - L2c LINE L2 -12 3375 2996 1 1089 429 20 0 0 chr11 66108711 66108761 -55735095 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1089 282 95 0 0 chr11 66108762 66108804 -55735052 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 1089 1433 280 64 62 chr11 66108829 66109410 -55734446 + Lx3C LINE L1 5178 5799 -498 1 1089 362 276 62 23 chr11 66109432 66109562 -55734294 + B1F SINE Alu 14 148 -1 1 1089 634 248 14 7 chr11 66109563 66109709 -55734147 + B1F2 SINE Alu 2 148 -1 1 1089 248 360 40 0 chr11 66109946 66110046 -55733810 - B1F1 SINE Alu -45 104 1 1 1089 363 115 12 25 chr11 66110682 66110723 -55733133 + polypurine Low_complexity Low_complexity 1 40 0 1 1089 968 128 6 16 chr11 66110723 66110905 -55732951 + GA-rich Low_complexity Low_complexity 1 180 0 1 1089 363 115 12 25 chr11 66110905 66110943 -55732913 + polypurine Low_complexity Low_complexity 41 78 0 1 1089 1407 249 50 18 chr11 66111025 66111421 -55732435 + RMER15 LTR ERVL 167 575 0 1 1089 372 364 48 11 chr11 66111542 66111731 -55732125 + MER20 DNA MER1_type 2 197 -22 1 1089 543 272 144 72 chr11 66112191 66112524 -55731332 + ORR1E LTR MaLR 3 359 0 1 1089 295 287 169 72 chr11 66112586 66112905 -55730951 + L2a LINE L2 2502 2851 -568 1 1089 332 332 202 6 chr11 66112951 66113302 -55730554 + L2a LINE L2 3003 3422 -4 1 1089 654 319 71 45 chr11 66113828 66114138 -55729718 + MER74B LTR ERVL 235 553 -69 1 1089 2257 136 142 0 chr11 66114138 66114483 -55729373 + ORR1B1 LTR MaLR 1 394 0 1 1089 654 319 71 45 chr11 66114483 66114550 -55729306 + MER74B LTR ERVL 554 622 0 1 1089 22 56 0 0 chr11 66114700 66114736 -55729120 + AT_rich Low_complexity Low_complexity 1 36 0 1 1089 344 310 123 14 chr11 66115052 66115271 -55728585 - L3b LINE CR1 -202 280 38 1 1089 224 91 91 0 chr11 66115736 66115769 -55728087 - MIRb SINE MIR -14 254 219 1 1089 218 274 48 16 chr11 66115737 66115800 -55728056 - MIRm SINE MIR -17 259 195 1 1089 3163 125 13 38 chr11 66116713 66117405 -55726451 - Lx5 LINE L1 -1000 6050 5363 1 1089 1377 184 74 49 chr11 66117399 66117724 -55726132 + Lx5 LINE L1 6718 7050 0 1 1089 222 37 0 0 chr11 66119151 66119178 -55724678 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 1 1089 399 113 0 0 chr11 66119844 66119906 -55723950 + (CCA)n Simple_repeat Simple_repeat 1 62 0 1 1089 308 298 43 17 chr11 66119908 66120024 -55723832 - PB1 SINE Alu -8 119 1 1 1089 254 286 83 0 chr11 66120059 66120143 -55723713 - MIRb SINE MIR -28 240 150 1 1089 414 255 9 9 chr11 66120929 66121040 -55722816 + L1MD LINE L1 5590 5700 -659 1 1089 319 359 55 20 chr11 66121072 66121274 -55722582 - L1MD3 LINE L1 -1995 6000 5792 1 1089 263 310 30 23 chr11 66121617 66121749 -55722107 + GA-rich Low_complexity Low_complexity 4 136 0 1 1089 485 295 56 63 chr11 66122318 66122604 -55721252 - MER33 DNA MER1_type -11 313 30 1 1089 395 265 0 0 chr11 66123589 66123672 -55720184 - ID4_ SINE ID 0 83 1 1 1089 227 226 105 116 chr11 66123678 66123773 -55720083 - ID_B1 SINE B4 -3 221 128 1 1089 1084 255 60 86 chr11 66124890 66125276 -55718580 - MTE2a LTR MaLR -3 376 1 1 1089 486 0 0 0 chr11 66125521 66125575 -55718281 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1089 328 244 37 82 chr11 66128364 66128498 -55715358 + L2c LINE L2 3258 3385 -2 1 1089 452 319 148 65 chr11 66128727 66128805 -55715051 + MLT1A0 LTR MaLR 13 86 -279 1 1089 9099 16 1 0 chr11 66128805 66129800 -55714056 + L1Md_A LINE L1 5603 6582 0 1 1089 452 319 148 65 chr11 66129800 66130045 -55713811 + MLT1A0 LTR MaLR 87 363 -2 1 1089 258 339 112 50 chr11 66130070 66130312 -55713544 + L4 LINE RTE 1527 1783 -246 1 1089 376 219 48 12 chr11 66130517 66130600 -55713256 + PB1D7 SINE Alu 10 95 -25 1 1089 437 34 17 0 chr11 66130601 66130660 -55713196 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1089 576 0 0 0 chr11 66131447 66131511 -55712345 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 1 1089 218 361 30 40 chr11 66132045 66132146 -55711710 - MIRb SINE MIR -44 224 125 1 1089 194 263 84 84 chr11 66132238 66132321 -55711535 - MIR SINE MIR -110 98 16 1 1089 489 76 0 0 chr11 66132365 66132431 -55711425 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 1 1089 208 171 0 0 chr11 66136254 66136295 -55707561 - MIRm SINE MIR -79 197 157 1 1089 365 338 14 14 chr11 66136492 66136633 -55707223 - MLT1B LTR MaLR 0 390 250 1 1089 218 305 0 17 chr11 66136694 66136754 -55707102 + GA-rich Low_complexity Low_complexity 2 60 0 2 1089 292 139 123 0 chr11 66136811 66136886 -55706970 - MLT1B LTR MaLR -289 85 1 1 1089 1350 84 0 58 chr11 66137645 66137762 -55706094 - L1Md_F2 LINE L1 -462 6122 6019 2 1089 1707 31 0 10 chr11 66137762 66137954 -55705902 - B2_Mm1a SINE B2 -2 191 2 2 1089 1350 70 0 56 chr11 66137954 66138064 -55705792 - L1Md_F2 LINE L1 -564 6018 5909 2 1089 2608 69 0 43 chr11 66138064 66138411 -55705445 + L1Md_F2 LINE L1 6250 6581 -1 2 1089 6138 81 2 27 chr11 66138406 66139210 -55704646 + L1_Mus2 LINE L1 5783 6566 0 2 1089 801 31 0 0 chr11 66139234 66139330 -55704526 + (GAA)n Simple_repeat Simple_repeat 2 97 0 2 1089 198 71 0 0 chr11 66139454 66139482 -55704374 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1089 390 308 86 34 chr11 66139499 66139768 -55704088 - L1MB8 LINE L1 -13 6171 5889 2 1089 214 333 23 11 chr11 66140839 66140927 -55702929 - L2 LINE L2 -1526 1893 1805 2 1089 318 350 92 59 chr11 66141799 66141951 -55701905 - MLT1I LTR MaLR -3 408 252 2 1089 254 336 47 0 chr11 66142029 66142157 -55701699 - MLT1I LTR MaLR -272 139 6 2 1089 275 336 22 44 chr11 66142162 66142299 -55701557 + MIRb SINE MIR 20 153 -115 2 1089 533 267 15 0 chr11 66142421 66142552 -55701304 - B1F SINE Alu -8 141 9 2 1089 351 328 135 20 chr11 66142796 66143167 -55700689 + MLT1F2 LTR MaLR 131 582 -13 2 1089 290 287 35 123 chr11 66145417 66145588 -55698268 + MTE2b LTR MaLR 176 331 -48 2 1089 7611 21 2 0 chr11 66145979 66146851 -55697005 + L1Md_T LINE L1 4712 5585 -298 2 1089 8424 51 5 1 chr11 66146852 66147833 -55696023 + L1Md_T LINE L1 5587 6571 -11 2 1089 29 28 0 0 chr11 66150094 66150130 -55693726 + AT_rich Low_complexity Low_complexity 1 36 0 2 1089 888 90 21 7 chr11 66150204 66150349 -55693507 + (GGAGA)n Simple_repeat Simple_repeat 5 151 0 2 1089 212 330 29 58 chr11 66150384 66150405 -55693451 - B1F2 SINE Alu -34 115 49 2 1089 236 243 162 0 chr11 66150405 66150479 -55693377 - B4 SINE B4 -98 194 109 2 1089 468 0 0 0 chr11 66151063 66151115 -55692741 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1089 881 242 32 0 chr11 66151688 66151907 -55691949 - L1MA4 LINE L1 -473 5827 5602 2 1089 194 222 0 0 chr11 66153036 66153072 -55690784 - MIRc SINE MIR -14 254 219 2 1089 399 73 0 0 chr11 66153307 66153362 -55690494 + (TATG)n Simple_repeat Simple_repeat 3 57 0 2 1089 215 182 23 0 chr11 66153363 66153407 -55690449 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1089 854 68 0 8 chr11 66153410 66153529 -55690327 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 2 1089 946 279 5 14 chr11 66154906 66155113 -55688743 - ID_B1 SINE B4 -19 205 1 2 1089 225 344 7 51 chr11 66156195 66156333 -55687523 - RMER12 LTR ERVK -466 856 725 2 1089 504 72 0 0 chr11 66156365 66156434 -55687422 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1089 26 0 0 0 chr11 66156466 66156492 -55687364 + AT_rich Low_complexity Low_complexity 1 26 0 2 1089 410 286 103 58 chr11 66156504 66156660 -55687196 + MLT1A0 LTR MaLR 12 174 -191 2 1089 380 282 30 15 chr11 66156665 66156798 -55687058 + CT-rich Low_complexity Low_complexity 3 137 0 2 1089 558 260 34 77 chr11 66156798 66157006 -55686850 + MLT1A0 LTR MaLR 162 360 -5 2 1089 432 281 79 148 chr11 66157038 66157443 -55686413 - MTEa LTR MaLR 0 379 3 2 1089 282 271 141 15 chr11 66157951 66158086 -55685770 + MIR SINE MIR 101 252 -10 2 1089 186 250 0 0 chr11 66158744 66158800 -55685056 + GA-rich Low_complexity Low_complexity 3 58 0 2 1089 312 200 70 14 chr11 66158804 66158875 -55684981 + HAL1-3A_ME LINE L1 2284 2358 -500 2 1089 583 279 107 22 chr11 66158936 66159160 -55684696 + MLT1H LTR MaLR 1 243 -306 2 1089 4786 220 119 44 chr11 66159711 66159832 -55684024 - Lx9 LINE L1 -2 7642 7503 2 1089 252 0 0 0 chr11 66159832 66159860 -55683996 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1089 4786 220 119 44 chr11 66159860 66160277 -55683579 - Lx9 LINE L1 -142 7502 7098 2 1089 648 97 0 0 chr11 66160277 66160370 -55683486 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 1089 4786 220 119 44 chr11 66160370 66161229 -55682627 - Lx9 LINE L1 -547 7097 6138 2 1089 185 395 60 28 chr11 66161861 66162077 -55681779 - MIRb SINE MIR -20 248 26 2 1089 787 301 36 55 chr11 66163346 66163708 -55680148 + L5 LINE RTE 1899 2253 -12 2 1089 6883 65 0 0 chr11 66163788 66164605 -55679251 + L1Md_T LINE L1 5766 6582 0 2 1089 620 259 78 6 chr11 66165041 66165208 -55678648 - MER5A DNA MER1_type -4 185 7 2 1089 8034 188 123 11 chr11 66165232 66167777 -55676079 + Lx6 LINE L1 3992 6780 -680 2 1089 609 14 0 0 chr11 66167777 66167847 -55676009 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1089 6047 235 115 21 chr11 66167847 66168363 -55675493 + Lx6 LINE L1 6781 7378 -82 2 1089 411 178 0 10 chr11 66168488 66168590 -55675266 + Lx6 LINE L1 7360 7460 0 2 1089 351 341 26 83 chr11 66168749 66168979 -55674877 - B4A SINE B4 -22 270 54 2 1089 454 278 105 74 chr11 66168990 66169052 -55674804 - B4A SINE B4 -56 236 164 2 1089 414 0 0 0 chr11 66169052 66169098 -55674758 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 1089 454 278 105 74 chr11 66169098 66169264 -55674592 - B4A SINE B4 -129 163 3 2 1089 393 304 69 20 chr11 66170477 66170722 -55673134 + MIR SINE MIR 3 259 -3 2 1089 255 342 66 30 chr11 66171899 66172065 -55671791 - MER5B DNA MER1_type 0 178 7 2 1089 230 0 0 32 chr11 66172154 66172185 -55671671 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1089 810 326 26 11 chr11 66172205 66172471 -55671385 - B4A SINE B4 -13 279 11 2 1089 225 152 0 0 chr11 66172690 66172723 -55671133 + ID_B1 SINE B4 93 125 -99 2 1089 337 302 102 112 chr11 66172907 66173299 -55670557 + MLT1A1 LTR MaLR 21 408 0 2 1089 219 139 0 0 chr11 66175962 66175998 -55667858 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 2 1089 453 81 0 0 chr11 66176003 66176065 -55667791 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1089 595 67 0 22 chr11 66176372 66176463 -55667393 + (TCC)n Simple_repeat Simple_repeat 2 90 0 2 1089 849 290 51 10 chr11 66177970 66178263 -55665593 + L1MC4 LINE L1 1469 1773 -4442 2 1089 423 0 0 0 chr11 66178313 66178360 -55665496 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1089 1210 135 0 6 chr11 66178470 66178649 -55665207 + B2_Mm2 SINE B2 2 179 -16 2 1089 385 264 36 202 chr11 66179236 66179573 -55664283 + L1MC4 LINE L1 7758 8038 -4 2 1089 227 196 0 0 chr11 66179617 66179663 -55664193 + T-rich Low_complexity Low_complexity 5 50 0 2 1089 923 226 9 33 chr11 66179667 66179878 -55663978 - B3 SINE B2 -10 206 1 2 1089 226 233 88 88 chr11 66180014 66180094 -55663762 + MLT1A1 LTR MaLR 288 367 -41 2 1089 243 0 0 0 chr11 66183643 66183670 -55660186 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1089 1935 81 177 0 chr11 66184526 66184809 -55659047 - L1_Mus1 LINE L1 0 6567 6235 2 1089 1078 339 84 8 chr11 66187105 66187604 -55656252 + MLT1F LTR MaLR 7 543 -5 2 1089 287 166 47 33 chr11 66188892 66189042 -55654814 + (TA)n Simple_repeat Simple_repeat 1 152 0 2 1089 256 301 14 0 chr11 66189152 66189225 -55654631 - Tigger5 DNA MER2_type -1 2405 2332 2 1089 231 355 86 9 chr11 66189244 66189466 -55654390 - Tigger5 DNA MER2_type -2163 243 6 2 1089 322 235 181 9 chr11 66189631 66189747 -55654109 + B3 SINE B2 71 206 -10 2 1089 484 186 0 17 chr11 66189942 66190057 -55653799 + CT-rich Low_complexity Low_complexity 2 114 0 2 1089 465 50 0 0 chr11 66190061 66190121 -55653735 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1089 237 278 111 0 chr11 66190346 66190454 -55653402 + LTR81B LTR ERV1? 103 222 -1171 2 1090 344 237 42 50 chr11 66192525 66192645 -55651211 - PB1D9 SINE Alu -1 119 1 2 1090 220 284 190 0 chr11 66192744 66192860 -55650996 - MER5A DNA MER1_type 0 189 52 2 1090 730 295 113 58 chr11 66192865 66193210 -55650646 + MTEb LTR MaLR 1 364 -15 2 1090 2074 120 12 58 chr11 66194551 66194896 -55648960 + ORR1A4 LTR MaLR 1 329 0 2 1090 490 220 188 6 chr11 66194987 66195147 -55648709 + B3A SINE B2 1 189 -9 2 1090 209 284 15 0 chr11 66195261 66195328 -55648528 + MIR SINE MIR 138 205 -57 2 1090 229 302 0 23 chr11 66195547 66195635 -55648221 + L1M5 LINE L1 4974 5059 -1087 2 1090 272 27 27 0 chr11 66195707 66195744 -55648112 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1090 478 280 18 12 chr11 66195770 66195979 -55647877 + L1M5 LINE L1 5265 5471 -769 2 1090 350 282 54 9 chr11 66196659 66196770 -55647086 - PB1D10 SINE Alu -1 116 1 2 1090 305 289 92 113 chr11 66196893 66197264 -55646592 - RMER10A LTR ERVL -25 417 55 2 1090 492 18 0 0 chr11 66197957 66198014 -55645842 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1090 477 0 0 0 chr11 66198014 66198067 -55645789 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1090 223 43 0 98 chr11 66198349 66198400 -55645456 + (TTTTTG)n Simple_repeat Simple_repeat 6 51 0 2 1090 652 206 0 29 chr11 66198400 66198540 -55645316 - B1_Mur2 SINE Alu 0 149 14 2 1090 227 255 20 0 chr11 66198835 66198886 -55644970 + GA-rich Low_complexity Low_complexity 2 53 0 2 1090 22 0 0 0 chr11 66199213 66199235 -55644621 + AT_rich Low_complexity Low_complexity 1 22 0 2 1090 244 158 0 0 chr11 66200663 66200701 -55643155 + ID4_ SINE ID 37 74 -9 2 1090 21 0 0 0 chr11 66200724 66200745 -55643111 + AT_rich Low_complexity Low_complexity 1 21 0 2 1090 216 350 43 21 chr11 66201669 66201809 -55642047 - MIRc SINE MIR -115 153 11 2 1090 246 345 60 40 chr11 66201887 66202038 -55641818 + MIRb SINE MIR 68 221 -47 2 1090 1118 63 42 0 chr11 66203157 66203299 -55640557 + B1_Mus1 SINE Alu 1 148 0 2 1090 1794 191 37 110 chr11 66203616 66204070 -55639786 + MTC LTR MaLR 1 421 0 2 1090 280 260 14 0 chr11 66204557 66204630 -55639226 - MLT1C LTR MaLR -359 108 35 2 1090 301 326 68 8 chr11 66204803 66204936 -55638920 + MLT1A1 LTR MaLR 268 408 0 2 1090 516 313 149 30 chr11 66205488 66205923 -55637933 - Lx8 LINE L1 -7 7466 6980 2 1090 971 270 112 53 chr11 66205927 66206489 -55637367 + L1ME3 LINE L1 5452 6051 -111 2 1090 21 36 0 0 chr11 66206578 66206606 -55637250 + AT_rich Low_complexity Low_complexity 1 28 0 2 1090 378 0 0 0 chr11 66206939 66206981 -55636875 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1090 954 88 0 0 chr11 66206981 66207118 -55636738 - B1_Mus1 SINE Alu 0 148 12 3 1090 323 332 34 48 chr11 66207583 66207789 -55636067 - MIRb SINE MIR -42 226 24 3 1090 249 289 0 13 chr11 66208421 66208432 -55635424 + ID4 SINE ID 4 42 -41 3 1090 281 193 0 17 chr11 66208432 66208490 -55635366 + tRNA-Ala-GCG tRNA tRNA 9 65 -10 3 1090 502 267 170 11 chr11 66208645 66208797 -55635059 + B3 SINE B2 1 164 -52 3 1090 357 24 0 0 chr11 66208797 66208839 -55635017 + (CATA)n Simple_repeat Simple_repeat 1 42 0 3 1090 502 267 170 11 chr11 66208839 66208868 -55634988 + B3 SINE B2 165 210 -6 3 1090 797 222 90 0 chr11 66209049 66209238 -55634618 + B3 SINE B2 1 206 -10 3 1090 1294 230 89 73 chr11 66209863 66210344 -55633512 + L1MB2 LINE L1 5673 6164 -7 3 1090 746 287 50 41 chr11 66210490 66210832 -55633024 + L1ME4a LINE L1 5596 5940 -184 3 1090 252 122 0 0 chr11 66212477 66212518 -55631338 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1090 279 0 0 0 chr11 66212543 66212574 -55631282 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1090 330 26 0 0 chr11 66212574 66212612 -55631244 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1090 466 307 33 38 chr11 66214170 66214380 -55629476 + MER20 DNA MER1_type 4 212 -7 3 1090 1153 258 69 16 chr11 66214735 66215113 -55628743 - L1MA6 LINE L1 -156 6144 5747 3 1090 272 325 8 50 chr11 66215261 66215381 -55628475 + L2b LINE L2 2778 2892 -527 3 1090 260 305 60 78 chr11 66215643 66215810 -55628046 + L2b LINE L2 3219 3382 -5 3 1090 778 188 106 72 chr11 66216114 66216321 -55627535 - B3 SINE B2 0 216 3 3 1090 307 247 25 25 chr11 66216956 66217035 -55626821 - ID4_ SINE ID -3 80 2 3 1090 204 217 0 0 chr11 66217311 66217357 -55626499 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 3 1090 243 266 0 30 chr11 66217715 66217781 -55626075 - ID2 SINE ID -17 66 3 3 1090 450 0 0 0 chr11 66218098 66218148 -55625708 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1090 182 118 0 29 chr11 66218855 66218890 -55624966 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 3 1090 251 311 16 56 chr11 66219308 66219434 -55624422 - MamRep434 DNA TcMar -292 134 14 3 1090 221 0 35 0 chr11 66219601 66219630 -55624226 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1090 181 331 90 23 chr11 66219943 66220076 -55623780 + MIR SINE MIR 31 172 -90 3 1090 1425 194 62 54 chr11 66220832 66221043 -55622813 - ORR1D1 LTR MaLR 0 374 173 3 1090 603 27 0 0 chr11 66221043 66221116 -55622740 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1090 1425 194 62 54 chr11 66221116 66221275 -55622581 - ORR1D1 LTR MaLR -202 172 2 3 1090 2884 224 88 32 chr11 66221287 66221630 -55622226 - ORR1D1-int LTR MaLR -20 1350 980 3 1090 1029 60 0 0 chr11 66221630 66221763 -55622093 + (TC)n Simple_repeat Simple_repeat 1 133 0 3 1090 2884 224 88 32 chr11 66221763 66222229 -55621627 - ORR1D1-int LTR MaLR -391 979 498 3 1090 2853 129 116 19 chr11 66222231 66222768 -55621088 + RLTR1D LTR ERV1 1 589 -16 3 1090 2290 210 8 22 chr11 66222783 66223285 -55620571 - ORR1D1-int LTR MaLR -873 497 3 3 1090 902 169 177 224 chr11 66223289 66223412 -55620444 - ORR1D1 LTR MaLR -3 371 244 3 1090 258 32 0 0 chr11 66223412 66223443 -55620413 + (CAGG)n Simple_repeat Simple_repeat 4 34 0 3 1090 902 169 177 224 chr11 66223443 66223513 -55620343 - ORR1D1 LTR MaLR -131 243 166 3 1090 974 134 6 0 chr11 66223513 66223677 -55620179 + (GAA)n Simple_repeat Simple_repeat 3 167 0 3 1090 902 169 177 224 chr11 66223677 66223871 -55619985 - ORR1D1 LTR MaLR -209 165 2 3 1090 267 239 55 0 chr11 66225550 66225643 -55618213 + MLT1H2 LTR MaLR 388 546 -2 3 1090 206 62 0 30 chr11 66226183 66226216 -55617640 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 3 1090 22 70 0 0 chr11 66226761 66226804 -55617052 + AT_rich Low_complexity Low_complexity 1 43 0 3 1090 351 0 0 0 chr11 66226845 66226884 -55616972 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1090 537 267 176 10 chr11 66226924 66227014 -55616842 - B4A SINE B4 -4 288 199 3 1090 1642 156 123 50 chr11 66227014 66227371 -55616485 + ORR1C2 LTR MaLR 1 383 -1 3 1090 537 267 176 10 chr11 66227371 66227473 -55616383 - B4A SINE B4 -94 198 64 3 1090 391 331 16 1 chr11 66227857 66228011 -55615845 + LTR16E1 LTR ERVL 398 568 0 3 1090 835 155 207 5 chr11 66229085 66229273 -55614583 - URR1A DNA MER1_type 0 226 1 3 1090 632 115 10 0 chr11 66230214 66230318 -55613538 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 3 1090 407 87 14 0 chr11 66230318 66230387 -55613469 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 1090 281 54 71 0 chr11 66230401 66230457 -55613399 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1090 964 312 111 92 chr11 66230467 66231194 -55612662 - MER21B LTR ERV1 -111 752 12 3 1090 183 146 55 0 chr11 66232601 66232656 -55611200 + GA-rich Low_complexity Low_complexity 1 58 0 3 1090 334 277 0 74 chr11 66233628 66233749 -55610107 - PB1D7 SINE Alu -4 116 5 3 1090 615 164 0 0 chr11 66234436 66234607 -55609249 + GA-rich Low_complexity Low_complexity 10 180 0 3 1090 393 0 0 161 chr11 66234608 66234813 -55609043 + (CAGAG)n Simple_repeat Simple_repeat 5 176 0 3 1090 234 0 0 0 chr11 66236085 66236111 -55607745 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1090 37 23 0 0 chr11 66236625 66236669 -55607187 + AT_rich Low_complexity Low_complexity 1 44 0 3 1090 423 0 0 0 chr11 66236669 66236716 -55607140 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1090 974 268 0 0 chr11 66236799 66237004 -55606852 + B3 SINE B2 6 210 -6 3 1090 311 247 41 10 chr11 66238145 66238243 -55605613 - MIR3 SINE MIR -21 187 87 3 1090 183 356 39 64 chr11 66239033 66239189 -55604667 + MIR3 SINE MIR 6 157 -51 3 1090 274 332 37 4 chr11 66240043 66240142 -55603714 + PB1D7 SINE Alu 6 105 -15 3 1090 741 53 0 0 chr11 66240142 66240236 -55603620 + (GAAA)n Simple_repeat Simple_repeat 1 94 0 3 1090 366 23 0 0 chr11 66240240 66240283 -55603573 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 3 1090 441 0 0 0 chr11 66240438 66240487 -55603369 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1090 5958 206 142 27 chr11 66240970 66242101 -55601755 + Lx7 LINE L1 3944 5248 -632 3 1090 180 0 0 0 chr11 66242101 66242121 -55601735 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1090 5958 242 73 19 chr11 66242121 66243826 -55600030 + Lx7 LINE L1 5249 6999 -697 3 1090 809 240 35 5 chr11 66243844 66244041 -55599815 + Lx7 LINE L1 7118 7320 -376 3 1090 238 282 0 0 chr11 66244084 66244155 -55599701 + T-rich Low_complexity Low_complexity 1 71 0 3 1090 229 225 61 24 chr11 66244177 66244259 -55599597 + Lx7 LINE L1 7611 7695 -1 3 1090 241 233 17 104 chr11 66245016 66245131 -55598725 + L1MEb LINE L1 65 169 -5901 3 1090 22 0 0 0 chr11 66245916 66245938 -55597918 + AT_rich Low_complexity Low_complexity 1 22 0 3 1090 767 308 0 0 chr11 66245940 66246135 -55597721 + B3 SINE B2 2 196 -20 3 1090 2256 85 55 0 chr11 66246661 66246991 -55596865 + L1_Mus3 LINE L1 6291 6638 0 3 1090 217 312 36 27 chr11 66247158 66247270 -55596586 + B1F SINE Alu 36 148 -1 3 1090 520 246 65 52 chr11 66248142 66248332 -55595524 - B3A SINE B2 -31 185 1 3 1090 454 292 76 10 chr11 66248370 66248567 -55595289 - MER2 DNA MER2_type -5 340 131 3 1090 251 192 53 27 chr11 66248678 66248753 -55595103 + L1MEc LINE L1 2312 2388 -4012 3 1090 594 0 0 0 chr11 66249566 66249632 -55594224 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 1090 2003 287 84 119 chr11 66250472 66250979 -55592877 + Lx9 LINE L1 6483 6939 -705 3 1090 1174 74 0 0 chr11 66250979 66251127 -55592729 - B1_Mus1 SINE Alu 0 148 1 3 1090 2003 287 84 119 chr11 66251127 66251690 -55592166 + Lx9 LINE L1 6940 7515 -129 3 1090 393 139 42 0 chr11 66251711 66251783 -55592073 - HAL1-3A_ME LINE L1 -808 2050 1976 3 1090 297 265 0 0 chr11 66251836 66251888 -55591968 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1090 294 29 0 0 chr11 66251888 66251923 -55591933 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1090 297 265 0 0 chr11 66251923 66251972 -55591884 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1090 636 182 0 0 chr11 66251982 66252158 -55591698 + CT-rich Low_complexity Low_complexity 1 176 0 3 1090 207 0 0 0 chr11 66252158 66252181 -55591675 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1090 1833 59 40 0 chr11 66252193 66252446 -55591410 + L1_Mus3 LINE L1 6370 6632 -6 3 1090 695 95 29 0 chr11 66252452 66252557 -55591299 + ORR1A3-int LTR MaLR 978 1085 -878 3 1090 345 203 0 0 chr11 66252556 66252625 -55591231 - ORR1A3-int LTR MaLR -1604 359 291 3 1090 251 310 8 58 chr11 66252814 66252934 -55590922 + PB1D10 SINE Alu 2 115 -2 3 1090 378 303 104 14 chr11 66253308 66253452 -55590404 - B3A SINE B2 -10 206 50 3 1090 3169 92 51 2 chr11 66253475 66253923 -55589933 + L1_Mus4 LINE L1 6165 6634 -2 3 1090 25 31 0 0 chr11 66254243 66254275 -55589581 + AT_rich Low_complexity Low_complexity 1 32 0 3 1090 27 49 0 0 chr11 66255791 66255832 -55588024 + AT_rich Low_complexity Low_complexity 1 41 0 3 1090 201 39 0 0 chr11 66256740 66256766 -55587090 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1090 475 342 18 42 chr11 66256769 66256934 -55586922 - RSINE1 SINE B4 -1 164 4 3 1090 245 358 22 15 chr11 66257359 66257495 -55586361 + L2a LINE L2 3275 3411 -15 3 1090 2251 157 123 29 chr11 66259383 66259863 -55583993 - Lx4B LINE L1 -540 6518 5994 3 1090 2853 169 22 36 chr11 66259863 66260415 -55583441 + Lx4B LINE L1 6508 7051 -7 3 1090 202 260 41 0 chr11 66261860 66261933 -55581923 + MIR3 SINE MIR 105 180 -28 3 1090 584 332 153 79 chr11 66262742 66263743 -55580113 + MLT1J-int LTR MaLR 310 1384 -3 3 1090 284 169 13 0 chr11 66263978 66264055 -55579801 + GA-rich Low_complexity Low_complexity 2 79 0 3 1090 293 140 18 0 chr11 66264273 66264330 -55579526 + CT-rich Low_complexity Low_complexity 3 60 0 3 1090 272 312 0 46 chr11 66264454 66264585 -55579271 - MIRb SINE MIR -39 229 105 3 1090 972 194 212 22 chr11 66265700 66266011 -55577845 - ORR1D1 LTR MaLR 0 374 5 3 1090 231 290 30 61 chr11 66266190 66266322 -55577534 + RMER12 LTR ERVK 723 850 -472 3 1090 402 21 0 0 chr11 66266345 66266392 -55577464 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1090 225 0 0 0 chr11 66266392 66266417 -55577439 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1090 235 104 0 20 chr11 66266417 66266466 -55577390 - Lx9 LINE L1 -23 7621 7574 3 1090 1649 255 23 25 chr11 66266469 66266558 -55577298 + RCHARR1 DNA MER1_type 1 87 -887 3 1090 4873 40 0 0 chr11 66266558 66267132 -55576724 + L1Md_T LINE L1 6009 6582 0 4 1090 1649 255 23 25 chr11 66267132 66267512 -55576344 + RCHARR1 DNA MER1_type 88 469 -505 3 1090 789 216 41 9 chr11 66267492 66267712 -55576144 + RCHARR1 DNA MER1_type 731 957 -17 3 1090 303 71 0 0 chr11 66268082 66268124 -55575732 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1090 249 159 0 0 chr11 66268400 66268444 -55575412 + (CTG)n Simple_repeat Simple_repeat 1 44 0 4 1090 197 271 14 14 chr11 66268823 66268894 -55574962 + MIR3 SINE MIR 126 196 -12 4 1090 970 71 7 7 chr11 66268914 66269055 -55574801 + (TCTCC)n Simple_repeat Simple_repeat 1 141 0 4 1090 1091 297 61 65 chr11 66270575 66271080 -55572776 + MLT1D LTR MaLR 1 503 -2 4 1090 461 281 30 24 chr11 66271081 66271249 -55572607 + MIR SINE MIR 94 262 0 4 1090 289 376 25 45 chr11 66272650 66272953 -55570903 + MLT1J LTR MaLR 66 321 -127 4 1090 497 175 10 0 chr11 66272953 66273056 -55570800 + GA-rich Low_complexity Low_complexity 2 105 0 4 1090 513 147 13 3 chr11 66274104 66274208 -55569648 + MT2B LTR ERVL 1 108 -425 4 1090 27214 38 0 2 chr11 66274223 66279681 -55564175 + L1Md_T LINE L1 56 5589 -297 4 1090 8653 30 0 0 chr11 66279682 66280677 -55563179 + L1Md_T LINE L1 5591 6585 0 4 1090 1179 211 23 82 chr11 66280716 66281097 -55562759 + MT2B LTR ERVL 181 540 -61 4 1090 459 0 0 0 chr11 66281098 66281149 -55562707 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1090 707 127 8 0 chr11 66281149 66281267 -55562589 + (GA)n Simple_repeat Simple_repeat 1 119 0 4 1090 337 60 0 39 chr11 66281267 66281319 -55562537 + MT2B LTR ERVL 535 584 0 4 1090 694 197 7 29 chr11 66281437 66281573 -55562283 + B1_Mur2 SINE Alu 12 144 -5 4 1090 585 0 0 0 chr11 66281574 66281639 -55562217 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1090 722 43 11 0 chr11 66281639 66281733 -55562123 + (GGAA)n Simple_repeat Simple_repeat 2 96 0 4 1090 180 163 0 0 chr11 66282178 66282221 -55561635 + A-rich Low_complexity Low_complexity 1 43 0 4 1090 44 0 0 0 chr11 66282390 66282434 -55561422 + AT_rich Low_complexity Low_complexity 1 44 0 4 1090 477 290 8 0 chr11 66282567 66282698 -55561158 + MLT1B LTR MaLR 1 132 -258 4 1090 1062 235 41 0 chr11 66282700 66282968 -55560888 + L1MA8 LINE L1 5996 6274 -17 4 1090 383 240 38 30 chr11 66282970 66283103 -55560753 + MLT1B LTR MaLR 111 244 -146 4 1090 43 0 0 0 chr11 66283338 66283381 -55560475 + AT_rich Low_complexity Low_complexity 1 43 0 4 1090 740 170 0 56 chr11 66283406 66283549 -55560307 + B1_Mur4 SINE Alu 16 150 0 4 1090 282 224 187 52 chr11 66283655 66283687 -55560169 + MLT1B LTR MaLR 202 231 -159 4 1090 399 89 0 0 chr11 66283687 66283743 -55560113 + (CAGG)n Simple_repeat Simple_repeat 2 57 0 4 1090 282 224 187 52 chr11 66283743 66283865 -55559991 + MLT1B LTR MaLR 232 376 -14 4 1090 306 0 0 0 chr11 66284498 66284532 -55559324 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1090 346 216 40 0 chr11 66284604 66284678 -55559178 + B1F1 SINE Alu 24 100 -49 4 1090 309 287 43 0 chr11 66284678 66284772 -55559084 + B1F SINE Alu 42 139 -10 4 1090 292 336 0 28 chr11 66285190 66285297 -55558559 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1090 581 271 31 25 chr11 66285316 66285475 -55558381 - RSINE1 SINE B4 0 165 6 4 1090 910 234 19 24 chr11 66286038 66286248 -55557608 + B3 SINE B2 3 211 -5 4 1090 38656 16 0 7 chr11 66286375 66291537 -55552319 + L1Md_A LINE L1 468 5586 -297 4 1090 8947 14 1 0 chr11 66291538 66292532 -55551324 + L1Md_A LINE L1 5588 6582 0 4 1090 865 229 39 10 chr11 66292770 66292977 -55550879 + B3 SINE B2 2 214 -2 4 1090 192 125 0 0 chr11 66293563 66293595 -55550261 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 4 1090 564 264 23 76 chr11 66293595 66293616 -55550240 - RSINE1 SINE B4 0 165 148 4 1090 1765 158 44 196 chr11 66293616 66294024 -55549832 + MTC LTR MaLR 1 344 -77 4 1090 1224 55 0 0 chr11 66294024 66294170 -55549686 + B1_Mus2 SINE Alu 2 147 0 4 1090 1765 158 44 196 chr11 66294170 66294257 -55549599 + MTC LTR MaLR 345 421 0 4 1090 564 264 23 76 chr11 66294257 66294407 -55549449 - RSINE1 SINE B4 -18 147 3 4 1090 348 24 0 0 chr11 66294509 66294550 -55549306 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1090 595 235 0 0 chr11 66295048 66295163 -55548693 + B1F SINE Alu 1 115 -34 4 1090 432 51 0 0 chr11 66296748 66296807 -55547049 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1090 5385 42 9 0 chr11 66297500 66298143 -55545713 + L1Md_F3 LINE L1 5922 6570 -14 4 1090 322 329 51 13 chr11 66298746 66298903 -55544953 + MLT1L LTR MaLR 351 513 -97 4 1090 668 310 121 29 chr11 66300281 66301030 -55542826 + L1M4 LINE L1 3446 4263 -1883 4 1090 225 0 0 0 chr11 66301032 66301057 -55542799 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1090 360 0 0 0 chr11 66301057 66301096 -55542760 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1090 441 0 0 0 chr11 66302273 66302322 -55541534 + (TAA)n Simple_repeat Simple_repeat 2 50 0 4 1090 1173 163 4 31 chr11 66303327 66303555 -55540301 - URR1B DNA MER1_type -2 223 2 4 1090 568 180 5 10 chr11 66304356 66304471 -55539385 + B3 SINE B2 1 119 -76 4 1090 602 308 94 16 chr11 66304646 66304900 -55538956 + MLT1J LTR MaLR 210 483 -29 4 1090 216 276 0 0 chr11 66304968 66305026 -55538830 - L2b LINE L2 -1 3374 3317 4 1090 319 294 26 71 chr11 66305623 66305777 -55538079 - HAL1-2a_MD LINE L1 -533 2491 2345 4 1090 431 290 8 15 chr11 66307552 66307685 -55536171 + MLT1A1 LTR MaLR 275 406 -2 4 1090 1725 209 82 10 chr11 66308184 66308575 -55535281 + MTD LTR MaLR 1 419 0 4 1090 3305 23 31 0 chr11 66308921 66309305 -55534551 + MTA_Mm LTR MaLR 1 396 0 4 1090 217 369 9 37 chr11 66309575 66309682 -55534174 + MIRb SINE MIR 89 192 -76 4 1090 186 269 52 103 chr11 66311525 66311641 -55532215 - L2a LINE L2 -50 3376 3267 4 1090 494 223 195 56 chr11 66311801 66311996 -55531860 + B4 SINE B4 2 223 -69 4 1090 474 33 0 0 chr11 66312097 66312157 -55531699 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1090 22 0 0 0 chr11 66312867 66312889 -55530967 + AT_rich Low_complexity Low_complexity 1 22 0 4 1090 284 362 0 0 chr11 66313203 66313308 -55530548 + MER5B DNA MER1_type 59 163 -15 4 1090 3562 121 65 62 chr11 66313315 66314063 -55529793 + RMER17A LTR ERVK 1 751 0 4 1090 220 364 101 40 chr11 66314121 66314270 -55529586 - MER5B DNA MER1_type 0 178 21 4 1090 267 250 0 0 chr11 66314901 66314985 -55528871 + T-rich Low_complexity Low_complexity 1 84 0 4 1090 263 284 168 37 chr11 66314985 66315146 -55528710 + MIR SINE MIR 45 226 -36 4 1090 504 296 94 49 chr11 66315396 66315684 -55528172 + MER2 DNA MER2_type 39 339 -6 4 1090 190 255 0 0 chr11 66317061 66317112 -55526744 - L3 LINE CR1 -252 4237 4187 4 1090 183 392 22 67 chr11 66317798 66317932 -55525924 + MIR3 SINE MIR 60 187 -21 4 1090 488 283 48 21 chr11 66318109 66318281 -55525575 + B3 SINE B2 33 212 -4 4 1090 24 0 0 0 chr11 66318294 66318318 -55525538 + AT_rich Low_complexity Low_complexity 1 24 0 4 1090 281 286 151 65 chr11 66318381 66318651 -55525205 + L1MB8 LINE L1 4949 5250 -896 4 1090 975 240 5 10 chr11 66318651 66318857 -55524999 + B3 SINE B2 4 208 -8 4 1090 1096 286 146 28 chr11 66318857 66319615 -55524241 + L1MB8 LINE L1 5251 6132 -52 4 1090 459 303 45 22 chr11 66319805 66319984 -55523872 + MER20 DNA MER1_type 37 219 0 4 1090 192 152 0 0 chr11 66321052 66321085 -55522771 + G-rich Low_complexity Low_complexity 3 35 0 4 1090 781 124 25 6 chr11 66321114 66321276 -55522580 + GA-rich Low_complexity Low_complexity 1 165 0 4 136 1844 166 52 50 chr11 66322212 66322593 -55521263 - MTD LTR MaLR -20 399 18 4 1091 4421 121 25 72 chr11 66322612 66323403 -55520453 + RMER6A LTR ERVK 3 756 0 4 1091 236 238 8 30 chr11 66323518 66323652 -55520204 + (TCCA)n Simple_repeat Simple_repeat 3 133 0 4 1091 3188 61 15 2 chr11 66324088 66324483 -55519373 + MTB LTR MaLR 1 400 0 4 1091 278 325 77 88 chr11 66326192 66326452 -55517404 + MIR SINE MIR 1 257 -5 4 1091 227 200 0 52 chr11 66326834 66326892 -55516964 + CT-rich Low_complexity Low_complexity 2 56 0 4 1091 239 274 0 99 chr11 66328484 66328565 -55515291 - PB1D10 SINE Alu -9 108 36 4 1091 22 0 0 0 chr11 66328637 66328659 -55515197 + AT_rich Low_complexity Low_complexity 1 22 0 4 1091 271 318 119 51 chr11 66328669 66328904 -55514952 - MamRep434 DNA TcMar -164 262 12 4 1091 504 0 0 0 chr11 66330255 66330311 -55513545 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 4 1091 286 226 28 0 chr11 66330975 66331064 -55512792 + MIRc SINE MIR 73 166 -110 4 1091 246 62 0 0 chr11 66332543 66332575 -55511281 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 4 1091 180 0 0 0 chr11 66333322 66333342 -55510514 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 4 1091 1664 42 0 0 chr11 66334864 66335057 -55508799 + B2_Mm1a SINE B2 1 193 0 4 1091 244 269 0 29 chr11 66337089 66337158 -55506698 + G-rich Low_complexity Low_complexity 1 67 0 4 1091 225 94 0 0 chr11 66339194 66339226 -55504630 + (CCG)n Simple_repeat Simple_repeat 3 34 0 4 1091 183 184 0 0 chr11 66339410 66339448 -55504408 + (CAG)n Simple_repeat Simple_repeat 2 39 0 4 1091 203 249 33 66 chr11 66339466 66339647 -55504209 + (CGGG)n Simple_repeat Simple_repeat 3 177 0 4 1091 28 29 0 0 chr11 66340830 66340865 -55502991 + AT_rich Low_complexity Low_complexity 1 35 0 4 1091 309 26 0 0 chr11 66342229 66342267 -55501589 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1091 186 103 0 0 chr11 66343173 66343202 -55500654 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 1091 1215 244 126 33 chr11 66343202 66343567 -55500289 + MTD LTR MaLR 13 411 -8 4 1091 904 67 0 0 chr11 66343844 66343964 -55499892 - B1_Mur4 SINE Alu -13 137 18 4 1091 477 231 17 58 chr11 66343964 66344005 -55499851 - ID_B1 SINE B4 -79 213 57 4 1091 889 110 6 6 chr11 66344109 66344282 -55499574 + (TC)n Simple_repeat Simple_repeat 1 173 0 4 1091 222 258 0 31 chr11 66344909 66344973 -55498883 + L2a LINE L2 3332 3393 -33 4 1091 341 333 62 83 chr11 66345008 66345250 -55498606 + LTR16A LTR ERVL 96 332 -119 4 1091 492 18 0 0 chr11 66345920 66345977 -55497879 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1091 545 228 86 22 chr11 66346176 66346315 -55497541 - RSINE1 SINE B4 -14 151 4 5 1091 366 330 86 14 chr11 66346581 66346790 -55497066 + MLT1H2 LTR MaLR 235 458 -31 5 1091 416 287 87 41 chr11 66346919 66347115 -55496741 - MLT1B LTR MaLR -16 374 170 5 1091 755 58 19 0 chr11 66347133 66347237 -55496619 + (TTTC)n Simple_repeat Simple_repeat 4 109 0 5 1091 308 211 13 0 chr11 66347620 66347696 -55496160 + (CATA)n Simple_repeat Simple_repeat 4 80 0 5 1091 481 255 6 61 chr11 66347870 66348033 -55495823 - MER117 DNA MER1_type -36 161 8 5 1091 877 121 7 20 chr11 66349841 66349993 -55493863 - URR1A DNA MER1_type 0 226 77 5 1091 1438 65 16 11 chr11 66350393 66350579 -55493277 - B2_Mm2 SINE B2 -4 191 5 5 1091 243 208 79 53 chr11 66350713 66350789 -55493067 + MTE2a LTR MaLR 1 78 -301 5 1091 331 277 49 10 chr11 66350835 66350937 -55492919 + ORR1E LTR MaLR 1 106 -253 5 1091 1027 144 39 0 chr11 66352605 66352785 -55491071 - URR1A DNA MER1_type 0 226 40 5 1091 240 312 186 33 chr11 66352822 66353037 -55490819 - L1MC4a LINE L1 -331 7454 7207 5 1091 380 288 39 103 chr11 66353061 66353293 -55490563 - L1MC4a LINE L1 -894 6988 6772 5 1091 21 0 0 0 chr11 66354301 66354322 -55489534 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 429 264 6 154 chr11 66354322 66354497 -55489359 + B1F SINE Alu 1 149 0 5 1091 1180 68 0 7 chr11 66356076 66356224 -55487632 + B1_Mus2 SINE Alu 1 147 0 5 1091 472 189 0 11 chr11 66356245 66356336 -55487520 - 4.5SRNA scRNA scRNA -3 91 2 5 1091 2214 209 34 7 chr11 66356336 66356784 -55487072 + Lx5 LINE L1 6573 7032 -18 5 1091 240 35 0 0 chr11 66356784 66356813 -55487043 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 5 1091 525 257 69 0 chr11 66356926 66357101 -55486755 - MER57F LTR ERV1 -245 191 5 5 1091 773 71 32 25 chr11 66357133 66357291 -55486565 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 5 1091 412 106 55 34 chr11 66357310 66357456 -55486400 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 5 1091 2037 160 97 53 chr11 66357840 66357940 -55485916 + RLTR28 LTR ERVL 1 99 -425 5 1091 189 0 0 0 chr11 66357940 66357961 -55485895 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5 1091 2037 160 97 53 chr11 66357961 66358334 -55485522 + RLTR28 LTR ERVL 100 495 -29 5 1091 225 196 0 0 chr11 66358680 66358726 -55485130 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 5 1091 4077 144 96 67 chr11 66359601 66360466 -55483390 + RMER19B LTR ERVK 1 890 -12 5 1091 353 244 152 88 chr11 66360507 66360678 -55483178 + B3A SINE B2 1 182 -16 5 1091 690 299 27 35 chr11 66361131 66361691 -55482165 + L1MD2 LINE L1 5118 5666 -576 5 1091 207 176 0 86 chr11 66361994 66362075 -55481781 + GA-rich Low_complexity Low_complexity 5 78 0 5 1091 234 284 33 43 chr11 66362147 66362239 -55481617 - MLT1A0 LTR MaLR -274 91 1 5 1091 499 318 47 16 chr11 66362244 66362436 -55481420 + L1MD2 LINE L1 5915 6112 -247 5 1091 327 268 0 0 chr11 66362955 66363043 -55480813 - ID4 SINE ID -61 91 4 5 1091 421 221 0 40 chr11 66363531 66363630 -55480226 + RSINE1 SINE B4 2 96 -69 5 1091 279 0 0 0 chr11 66363708 66363739 -55480117 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1091 351 241 25 100 chr11 66363763 66363883 -55479973 + RSINE1 SINE B4 11 121 -44 5 1091 425 50 0 16 chr11 66363904 66363965 -55479891 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1091 201 222 0 0 chr11 66365367 66365403 -55478453 + polypyrimidine Low_complexity Low_complexity 4 39 0 5 1091 2525 111 78 23 chr11 66366065 66366463 -55477393 + MTC LTR MaLR 2 421 0 5 1091 245 252 120 17 chr11 66366568 66366685 -55477171 - MamRep434 DNA TcMar -93 333 205 5 1091 204 323 0 0 chr11 66367060 66367125 -55476731 + GA-rich Low_complexity Low_complexity 2 66 0 5 1091 244 316 19 57 chr11 66367210 66367368 -55476488 - MER117 DNA MER1_type -40 157 6 5 1091 540 65 0 0 chr11 66367574 66367651 -55476205 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1091 475 291 37 0 chr11 66367654 66367788 -55476068 - RSINE1 SINE B4 -4 161 23 5 1091 193 277 0 0 chr11 66367951 66367998 -55475858 - L4 LINE RTE -593 1436 1390 5 1091 26 0 0 0 chr11 66369543 66369569 -55474287 + AT_rich Low_complexity Low_complexity 1 26 0 5 1091 252 0 0 0 chr11 66369778 66369806 -55474050 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1091 630 49 0 0 chr11 66369806 66369887 -55473969 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1091 265 321 45 18 chr11 66370260 66370371 -55473485 - MLT1G LTR MaLR -6 483 370 5 1091 306 349 94 20 chr11 66370487 66370689 -55473167 - MLT1G LTR MaLR -309 282 66 5 1091 656 185 20 100 chr11 66372245 66372395 -55471461 - B1_Mus2 SINE Alu 0 147 10 5 1091 424 236 16 174 chr11 66372395 66372435 -55471421 - ID_B1 SINE B4 0 224 65 5 1091 180 97 0 0 chr11 66373092 66373123 -55470733 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1091 446 301 11 65 chr11 66373778 66373963 -55469893 + Tigger5 DNA MER2_type 26 200 -2206 5 1091 280 330 230 28 chr11 66376170 66376413 -55467443 + MLT1C LTR MaLR 3 294 -173 5 1091 1155 163 0 102 chr11 66376782 66377028 -55466828 + URR1A DNA MER1_type 1 221 -5 5 1091 201 94 0 0 chr11 66378812 66378844 -55465012 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1091 284 0 0 27 chr11 66378875 66378912 -55464944 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1091 417 310 79 33 chr11 66379019 66379259 -55464597 - MLT1G LTR MaLR -329 266 13 5 1091 811 230 65 40 chr11 66379529 66379728 -55464128 + B3 SINE B2 7 210 -6 5 1091 1130 62 7 0 chr11 66382393 66382538 -55461318 + B1_Mus2 SINE Alu 1 146 -1 5 1091 2376 151 15 132 chr11 66382883 66383476 -55460380 + RLTR24 LTR ERV1 6 529 0 5 1091 1349 217 105 3 chr11 66383851 66384184 -55459672 + MTD LTR MaLR 10 376 -43 5 1091 1137 76 0 7 chr11 66384226 66384371 -55459485 - B1_Mm SINE Alu -2 145 2 5 1091 184 242 78 31 chr11 66384644 66384708 -55459148 + L2b LINE L2 3309 3375 0 5 1091 976 185 103 0 chr11 66385174 66385369 -55458487 - B3 SINE B2 0 216 2 5 1091 22 35 0 0 chr11 66387953 66387982 -55455874 + AT_rich Low_complexity Low_complexity 1 29 0 5 1091 225 152 0 0 chr11 66388506 66388539 -55455317 - L1MC LINE L1 -2337 5545 5513 5 1091 419 307 0 32 chr11 66388688 66388846 -55455010 - L1MA10 LINE L1 -11 6323 6171 5 1091 586 95 17 33 chr11 66389034 66389154 -55454702 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 5 1091 483 33 0 0 chr11 66389154 66389214 -55454642 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1091 241 318 15 0 chr11 66389216 66389282 -55454574 - ID SINE ID -150 74 8 5 1091 811 262 33 45 chr11 66389282 66389617 -55454239 - L1MB1 LINE L1 -219 5949 5619 5 1091 488 101 0 25 chr11 66389885 66389966 -55453890 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 5 1091 1882 285 54 47 chr11 66390605 66391268 -55452588 - Lx9 LINE L1 -452 7192 6525 5 1091 555 332 114 33 chr11 66391917 66391948 -55451908 - L1ME3A LINE L1 -196 5977 5952 5 1091 2236 166 58 2 chr11 66391948 66392347 -55451509 - MTC LTR MaLR 0 421 1 5 1091 6314 174 25 60 chr11 66392347 66393650 -55450206 - MTC-int LTR MaLR 0 1258 1 5 1091 2177 153 69 27 chr11 66393650 66394054 -55449802 - MTC LTR MaLR 0 421 1 5 1091 555 332 114 33 chr11 66394054 66394450 -55449406 - L1ME3A LINE L1 -222 5951 5515 5 1091 857 279 87 42 chr11 66394734 66395045 -55448811 + MTE2a LTR MaLR 4 328 -51 5 1091 3960 9 0 0 chr11 66395045 66395486 -55448370 + L1Md_T LINE L1 5146 5586 -297 5 1091 8612 29 3 0 chr11 66395486 66396479 -55447377 + L1Md_T LINE L1 5587 6582 0 5 1091 242 96 38 19 chr11 66396484 66396537 -55447319 + MTE2a LTR MaLR 326 379 0 5 1091 182 161 0 0 chr11 66396886 66396917 -55446939 + MIR SINE MIR 49 79 -183 5 1091 231 262 0 0 chr11 66396952 66397032 -55446824 + T-rich Low_complexity Low_complexity 2 81 0 5 1091 260 316 10 30 chr11 66397037 66397138 -55446718 + MIR SINE MIR 143 241 -21 5 1091 196 28 26 53 chr11 66397466 66397504 -55446352 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1091 25 0 0 0 chr11 66397607 66397632 -55446224 + AT_rich Low_complexity Low_complexity 1 25 0 5 1091 235 245 31 31 chr11 66397688 66397785 -55446071 - MLT1A0 LTR MaLR -3 405 309 5 1091 294 297 81 0 chr11 66397955 66398066 -55445790 - MLT1A0 LTR MaLR -245 120 1 5 1091 426 167 44 0 chr11 66400661 66400751 -55443105 + MTD LTR MaLR 13 106 -313 5 1091 262 111 23 58 chr11 66400754 66400840 -55443016 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 5 1091 1375 210 32 26 chr11 66400841 66401149 -55442707 + MTD LTR MaLR 110 419 0 5 1091 311 272 32 11 chr11 66402074 66402167 -55441689 - L2a LINE L2 0 3426 3332 5 1091 208 366 2 0 chr11 66402226 66402338 -55441518 + MIR SINE MIR 2 114 -154 5 1091 2968 159 13 6 chr11 66402400 66402924 -55440932 + RLTR11A LTR ERVK 1 528 0 5 1091 1186 254 101 8 chr11 66403077 66403443 -55440413 - MTD LTR MaLR -1 418 19 5 1091 968 142 130 88 chr11 66403529 66403745 -55440111 - URR1B DNA MER1_type 0 225 1 5 1091 204 125 0 0 chr11 66403971 66404003 -55439853 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 5 1091 414 0 0 0 chr11 66405799 66405845 -55438011 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1091 434 247 158 25 chr11 66406204 66406362 -55437494 + B3A SINE B2 5 183 -15 5 1091 1809 191 56 33 chr11 66407405 66407801 -55436055 - MTD LTR MaLR -14 405 1 5 1091 237 139 0 0 chr11 66407967 66408010 -55435846 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5 1091 554 307 90 11 chr11 66408119 66408139 -55435717 - B3A SINE B2 -6 192 174 5 1091 213 65 0 0 chr11 66408139 66408170 -55435686 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1091 554 307 90 11 chr11 66408170 66408327 -55435529 - B3A SINE B2 -25 173 1 5 1091 804 281 155 22 chr11 66409741 66410058 -55433798 + ORR1E LTR MaLR 1 359 0 5 1091 237 196 0 0 chr11 66410624 66410675 -55433181 + CT-rich Low_complexity Low_complexity 2 52 0 5 1091 207 0 0 0 chr11 66410683 66410706 -55433150 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1091 600 151 126 0 chr11 66410706 66410825 -55433031 - B1_Mur1 SINE Alu -13 136 3 5 1091 233 304 30 65 chr11 66410949 66411118 -55432738 - LTR48B LTR ERV1 -479 165 3 5 1091 603 102 0 0 chr11 66411191 66411279 -55432577 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 5 1091 204 40 0 0 chr11 66411288 66411313 -55432543 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 1091 479 71 0 41 chr11 66411316 66411389 -55432467 - B1_Mus1 SINE Alu -77 71 2 6 1091 1198 205 185 14 chr11 66413610 66413956 -55429900 - MTD LTR MaLR -14 405 1 6 1091 737 358 63 37 chr11 66414339 66414797 -55429059 - MER74A LTR ERVL -70 488 19 6 1091 340 274 0 47 chr11 66414941 66415048 -55428808 + B1F1 SINE Alu 48 149 0 6 1091 903 197 18 90 chr11 66415058 66415281 -55428575 + B3 SINE B2 3 209 -7 6 1091 1392 138 24 64 chr11 66415438 66415755 -55428101 - RLTRETN_Mm LTR ERVK -15 394 3 6 1091 525 303 91 15 chr11 66417638 66417836 -55426020 + MER20 DNA MER1_type 1 213 -6 6 1091 260 259 22 11 chr11 66418824 66418914 -55424942 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 6 1091 1055 278 38 25 chr11 66418942 66419307 -55424549 - ORR1D2 LTR MaLR 0 370 1 6 1091 387 0 0 0 chr11 66419856 66419899 -55423957 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1091 23 54 0 0 chr11 66420775 66420812 -55423044 + AT_rich Low_complexity Low_complexity 1 37 0 6 1091 320 284 62 39 chr11 66420846 66420974 -55422882 + L1MB8 LINE L1 6047 6177 -1 6 1091 2406 92 119 94 chr11 66421914 66422384 -55421472 - RLTR45 LTR ERVK 0 482 1 6 1091 1063 61 0 13 chr11 66422654 66422804 -55421052 + (TTC)n Simple_repeat Simple_repeat 3 150 0 6 1091 496 42 28 0 chr11 66422804 66422875 -55420981 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 1091 813 188 0 20 chr11 66422907 66423054 -55420802 - B1_Mur2 SINE Alu -5 144 1 6 1091 347 191 69 121 chr11 66423608 66423781 -55420075 + RLTR15 LTR ERVK 1 164 -195 6 1091 211 288 0 0 chr11 66423784 66423864 -55419992 + GA-rich Low_complexity Low_complexity 5 84 0 6 1091 315 0 0 0 chr11 66424084 66424119 -55419737 + (CAT)n Simple_repeat Simple_repeat 2 36 0 6 1091 313 324 50 90 chr11 66425184 66425384 -55418472 - LTR16B1 LTR ERVL -10 470 279 6 1091 1151 119 117 15 chr11 66425585 66425790 -55418066 - URR1A DNA MER1_type 0 226 1 6 1091 397 328 72 58 chr11 66425919 66426197 -55417659 + MARNA DNA Mariner 205 486 -100 6 1091 351 0 0 0 chr11 66426628 66426667 -55417189 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1091 302 350 62 2 chr11 66427120 66427269 -55416587 + MIRc SINE MIR 19 175 -101 6 1091 329 198 43 11 chr11 66427461 66427553 -55416303 + L1MCa LINE L1 269 363 -6388 6 1091 679 195 98 102 chr11 66427633 66427687 -55416169 + L1MCa LINE L1 911 958 -5087 6 1091 257 347 0 0 chr11 66427687 66427759 -55416097 + ID4 SINE ID 1 72 -11 6 1091 708 195 98 102 chr11 66427759 66427947 -55415909 + L1MCa LINE L1 959 1234 -5517 6 1091 189 0 0 0 chr11 66427947 66427968 -55415888 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1091 708 213 121 9 chr11 66427968 66428022 -55415834 + L1MCa LINE L1 1235 1291 -5460 6 1091 249 331 41 7 chr11 66428042 66428188 -55415668 + L1MCa LINE L1 1339 1489 -5262 6 1091 648 282 79 28 chr11 66429229 66429481 -55414375 + MER2 DNA MER2_type 1 265 -80 6 1091 759 281 130 22 chr11 66429613 66429937 -55413919 + Lx8 LINE L1 7110 7468 -5 6 1091 1651 286 31 15 chr11 66430533 66430987 -55412869 + Lx7 LINE L1 6335 6795 -901 6 1091 4010 53 8 0 chr11 66431050 66431540 -55412316 - L1Md_F2 LINE L1 -13 6569 6076 6 1091 1390 33 0 11 chr11 66431725 66431907 -55411949 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1091 1163 62 0 22 chr11 66431924 66432106 -55411750 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1091 680 175 0 24 chr11 66432106 66432270 -55411586 + CT-rich Low_complexity Low_complexity 2 161 0 6 1091 2445 250 25 28 chr11 66432507 66433105 -55410751 + Lx7 LINE L1 6794 7389 -307 6 1091 267 54 0 0 chr11 66433177 66433214 -55410642 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1091 23 0 0 0 chr11 66433264 66433287 -55410569 + AT_rich Low_complexity Low_complexity 1 23 0 6 1091 244 312 12 12 chr11 66433396 66433477 -55410379 - MLT1L LTR MaLR -528 82 2 6 1091 704 151 0 6 chr11 66433748 66433777 -55410079 + polypyrimidine Low_complexity Low_complexity 152 180 0 6 1091 2934 6 0 0 chr11 66433777 66434099 -55409757 - RLTRETN_Mm LTR ERVK 0 322 1 6 1091 704 151 0 6 chr11 66434099 66434249 -55409607 + CT-rich Low_complexity Low_complexity 2 151 0 6 1091 468 0 0 0 chr11 66434259 66434311 -55409545 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1091 452 285 56 34 chr11 66434658 66434836 -55409020 - MLT2B2 LTR ERVL -218 297 116 6 1091 301 215 12 37 chr11 66435101 66435183 -55408673 + RMER20A LTR ERVK 161 240 -276 6 1091 240 164 82 0 chr11 66435211 66435272 -55408584 + RMER20A LTR ERVK 303 368 -259 6 1091 254 250 195 24 chr11 66435325 66435407 -55408449 + RMER20A LTR ERVK 494 589 -38 6 1091 24 67 0 0 chr11 66435839 66435884 -55407972 + AT_rich Low_complexity Low_complexity 1 45 0 6 1091 1893 213 11 48 chr11 66436105 66436540 -55407316 - MTC LTR MaLR -2 419 1 6 1091 932 303 40 19 chr11 66438619 66438942 -55404914 + MLT1A0 LTR MaLR 1 330 -35 6 1091 967 123 43 0 chr11 66438943 66439106 -55404750 + URR1A DNA MER1_type 57 226 0 6 1091 555 56 0 0 chr11 66439382 66439453 -55404403 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1091 2175 194 5 63 chr11 66439454 66439937 -55403919 - MT2A LTR ERVL -76 457 3 6 1091 1545 218 35 3 chr11 66439946 66440263 -55403593 - ORR1D2 LTR MaLR -43 327 1 6 1091 293 351 70 23 chr11 66440263 66440434 -55403422 - MLT1J2 LTR MaLR -240 208 30 6 1091 206 276 17 0 chr11 66440598 66440656 -55403200 - MER5A DNA MER1_type -38 151 93 6 1091 364 364 29 6 chr11 66441201 66441375 -55402481 + LTR82A LTR ERVL 101 278 -594 6 1091 260 250 55 33 chr11 66441669 66441760 -55402096 + LTR82A LTR ERVL 608 700 -172 6 1091 34232 65 1 5 chr11 66441777 66446968 -55396888 + L1Md_F LINE L1 478 5586 -297 6 1091 8617 51 0 0 chr11 66446968 66447952 -55395904 + L1Md_F2 LINE L1 5587 6570 -12 6 1091 258 32 0 0 chr11 66448685 66448716 -55395140 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1091 261 167 0 0 chr11 66449112 66449166 -55394690 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1091 271 149 0 0 chr11 66449186 66449233 -55394623 - Lx8 LINE L1 0 7473 7427 6 1091 471 113 0 0 chr11 66449274 66449345 -55394511 + (TATG)n Simple_repeat Simple_repeat 4 74 0 6 1091 370 188 254 24 chr11 66449396 66449565 -55394291 + L1MEc LINE L1 2147 2354 -4046 6 1091 861 282 39 5 chr11 66449565 66449772 -55394084 + ID_B1 SINE B4 4 217 -7 6 1091 1161 204 19 5 chr11 66449777 66449984 -55393872 + B3 SINE B2 1 210 -6 6 1091 842 260 94 41 chr11 66450223 66450468 -55393388 - MTEa LTR MaLR -119 260 3 6 1091 3754 285 68 17 chr11 66450472 66451642 -55392214 - MTEa-int LTR MaLR -2 1578 350 6 1091 383 300 217 0 chr11 66451643 66451823 -55392033 - MTEa-int LTR MaLR -1334 246 28 6 1091 1447 242 40 32 chr11 66451838 66452214 -55391642 - MTEa LTR MaLR 0 379 1 6 1091 321 239 68 0 chr11 66452526 66452614 -55391242 - L1MB8 LINE L1 -321 5857 5764 6 1091 488 85 75 180 chr11 66452675 66452875 -55390981 + RMER17C LTR ERVK 95 273 -137 6 1091 189 0 0 0 chr11 66452875 66452896 -55390960 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1091 1685 219 32 3 chr11 66452900 66453239 -55390617 - MTD LTR MaLR -59 360 12 6 136 485 315 93 13 chr11 66453267 66453643 -55390213 - L1M5 LINE L1 -462 5717 5312 6 1092 213 282 23 12 chr11 66453749 66453835 -55390021 + L2 LINE L2 2525 2611 -808 6 1092 1466 208 45 48 chr11 66453840 66454173 -55389683 - ORR1C2 LTR MaLR -52 332 1 6 1092 866 269 83 19 chr11 66454173 66454378 -55389478 - ORR1D2 LTR MaLR -40 330 112 6 1092 437 294 126 73 chr11 66456417 66456758 -55387098 + ORR1E LTR MaLR 1 359 0 6 1092 23 54 0 0 chr11 66456765 66456802 -55387054 + AT_rich Low_complexity Low_complexity 1 37 0 6 1092 757 189 79 0 chr11 66457430 66457557 -55386299 + B1_Mur4 SINE Alu 1 137 -13 6 1092 306 0 0 0 chr11 66457562 66457596 -55386260 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1092 186 263 105 0 chr11 66458041 66458098 -55385758 + L2 LINE L2 2343 2405 -1014 6 1092 227 266 67 84 chr11 66458235 66458354 -55385502 + MLT1A LTR MaLR 1 117 -257 6 1092 1663 185 14 7 chr11 66458794 66459323 -55384533 + Lx5 LINE L1 979 1513 -4364 6 1092 1176 48 0 0 chr11 66459323 66459470 -55384386 + (GGA)n Simple_repeat Simple_repeat 2 148 0 6 1092 1389 61 0 0 chr11 66459474 66459654 -55384202 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1092 22151 167 34 36 chr11 66459655 66460293 -55383563 + Lx5 LINE L1 1485 2059 -3818 6 1092 372 59 0 0 chr11 66460293 66460344 -55383512 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1092 22151 167 34 36 chr11 66460344 66463608 -55380248 + Lx5 LINE L1 2060 5365 -512 6 1092 564 15 0 0 chr11 66463608 66463673 -55380183 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1092 22151 202 42 21 chr11 66463673 66465309 -55378547 + Lx5 LINE L1 5366 7045 -5 6 1092 23 0 0 0 chr11 66465330 66465353 -55378503 + AT_rich Low_complexity Low_complexity 1 23 0 6 1092 1319 270 128 13 chr11 66466195 66466571 -55377285 + MTD LTR MaLR 1 419 0 6 1092 302 319 0 0 chr11 66466751 66466823 -55377033 + ID2 SINE ID 2 73 -10 6 1092 278 301 60 0 chr11 66466823 66466834 -55377022 + ID SINE ID 2 89 -135 6 1092 1329 279 58 45 chr11 66466901 66467283 -55376573 + MTD LTR MaLR 18 404 -15 6 1092 411 298 179 0 chr11 66470030 66470181 -55373675 - MLT1A0 LTR MaLR -15 350 173 6 1092 270 303 0 33 chr11 66470220 66470312 -55373544 - MLT1A0 LTR MaLR -275 90 2 6 1092 203 354 27 100 chr11 66470864 66470974 -55372882 + L2c LINE L2 2984 3085 -302 6 1092 202 125 150 0 chr11 66471786 66471826 -55372030 + L3 LINE CR1 2789 2834 -1655 6 1092 315 0 0 0 chr11 66471999 66472034 -55371822 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 1092 1124 120 0 13 chr11 66472034 66472176 -55371680 - B1_Mur4 SINE Alu -9 141 2 6 1092 496 309 79 111 chr11 66472198 66472540 -55371316 + ORR1E LTR MaLR 24 354 -5 6 1092 505 171 112 16 chr11 66472661 66472786 -55371070 - RMER1C Other Other -8 1334 1198 6 1092 640 165 0 14 chr11 66472786 66472927 -55370929 + GA-rich Low_complexity Low_complexity 2 140 0 6 1092 2268 250 239 79 chr11 66472927 66473112 -55370744 - RMER1C Other Other -124 1218 1058 6 1092 315 0 0 0 chr11 66473112 66473147 -55370709 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1092 1250 36 0 0 chr11 66473147 66473285 -55370571 - B1_Mus1 SINE Alu -9 139 2 6 1092 2268 250 239 79 chr11 66473285 66473360 -55370496 - RMER1C Other Other -285 1057 1012 6 1092 1228 67 0 32 chr11 66473360 66473546 -55370310 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1092 2268 250 239 79 chr11 66473546 66474085 -55369771 - RMER1C Other Other -331 1011 258 6 1092 450 0 0 0 chr11 66474085 66474135 -55369721 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1092 2268 250 239 79 chr11 66474135 66474358 -55369498 - RMER1C Other Other -1085 257 33 6 1092 276 130 0 0 chr11 66474617 66474663 -55369193 + (CCTG)n Simple_repeat Simple_repeat 1 46 0 7 1092 439 264 11 0 chr11 66474665 66474752 -55369104 - B1_Mur1 SINE Alu -3 146 59 7 1092 276 298 29 96 chr11 66475825 66475929 -55367927 - PB1 SINE Alu -15 112 16 7 1092 239 304 147 35 chr11 66475837 66475953 -55367903 - ID_B1 SINE B4 -25 199 71 7 1092 839 179 104 35 chr11 66477306 66477508 -55366348 + B3 SINE B2 1 216 0 7 1092 180 0 0 0 chr11 66477781 66477801 -55366055 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1092 1223 286 54 40 chr11 66479024 66479388 -55364468 - L1MA7 LINE L1 -5 6286 5923 7 1092 743 232 7 0 chr11 66479388 66479526 -55364330 + B1F SINE Alu 2 140 -9 7 1092 1223 286 54 40 chr11 66479526 66479660 -55364196 - L1MA7 LINE L1 -369 5922 5781 7 1092 527 328 141 27 chr11 66479943 66480313 -55363543 - MLT2F LTR ERVL -72 591 180 7 1092 402 154 45 18 chr11 66480970 66481075 -55362781 - L1MA4 LINE L1 -60 6240 6127 7 1092 655 262 0 0 chr11 66481084 66481210 -55362646 - B1_Mur2 SINE Alu -21 128 3 7 1092 9047 12 0 3 chr11 66481494 66482962 -55360894 - L1Md_T LINE L1 0 6582 5154 7 1092 594 236 112 54 chr11 66482976 66483172 -55360684 - Lx9 LINE L1 0 7644 7437 7 1092 408 55 0 0 chr11 66483172 66483227 -55360629 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1092 594 236 112 54 chr11 66483227 66483238 -55360618 - Lx9 LINE L1 -208 7436 7424 7 1092 225 0 0 0 chr11 66483238 66483263 -55360593 + (CATG)n Simple_repeat Simple_repeat 1 25 0 7 1092 594 236 112 54 chr11 66483263 66483332 -55360524 - Lx9 LINE L1 -221 7423 7353 7 1092 2740 215 81 8 chr11 66483326 66483918 -55359938 + Lx9 LINE L1 6605 7239 -405 7 1092 25 31 0 0 chr11 66485236 66485268 -55358588 + AT_rich Low_complexity Low_complexity 1 32 0 7 1092 238 308 0 49 chr11 66485715 66485797 -55358059 + B1_Mus1 SINE Alu 10 87 -61 7 1092 333 84 0 40 chr11 66485818 66485892 -55357964 + (CAAA)n Simple_repeat Simple_repeat 3 73 0 7 1092 243 329 0 0 chr11 66486039 66486109 -55357747 - ID4 SINE ID -4 79 10 7 1092 1386 274 114 8 chr11 66486109 66486865 -55356991 - RMER1A Other Other -582 448 1 7 1092 707 223 108 0 chr11 66486938 66487104 -55356752 - MLT1D LTR MaLR -69 436 253 7 1092 213 345 11 56 chr11 66487115 66487204 -55356652 - MER5A DNA MER1_type -61 128 44 7 1092 448 279 77 50 chr11 66487493 66487640 -55356216 + B3A SINE B2 1 158 -37 7 1092 399 41 0 0 chr11 66487640 66487689 -55356167 + (CATA)n Simple_repeat Simple_repeat 4 52 0 7 1092 236 54 54 0 chr11 66487690 66487727 -55356129 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 7 1092 358 279 77 50 chr11 66487727 66487758 -55356098 + B2_Mm2 SINE B2 159 186 -9 7 1092 410 204 7 27 chr11 66489387 66489533 -55354323 + CT-rich Low_complexity Low_complexity 2 144 0 7 1092 242 183 14 0 chr11 66490979 66491050 -55352806 + GA-rich Low_complexity Low_complexity 2 73 0 7 1092 1852 174 113 0 chr11 66491476 66491821 -55352035 + ORR1C2 LTR MaLR 1 384 0 7 1092 225 260 24 61 chr11 66491874 66491956 -55351900 + ID2 SINE ID 2 80 -3 7 1092 479 305 201 16 chr11 66492209 66492572 -55351284 - LTR55 LTR ERV -8 540 111 7 1092 396 314 64 7 chr11 66494355 66494496 -55349360 + ORR1E LTR MaLR 3 151 -208 7 1092 4054 40 2 0 chr11 66494501 66494978 -55348878 - L1_Mus2 LINE L1 -345 6221 5744 7 1092 2843 69 0 6 chr11 66494978 66495328 -55348528 + L1_Mus2 LINE L1 6216 6563 -3 7 1092 394 282 84 24 chr11 66495352 66495513 -55348343 + ORR1E LTR MaLR 203 379 0 7 1092 477 0 0 0 chr11 66496386 66496439 -55347417 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1092 2288 115 39 77 chr11 66496452 66496866 -55346990 + RLTR23 LTR ERV1 27 424 -6 7 1092 385 110 27 0 chr11 66496866 66496939 -55346917 + (CATA)n Simple_repeat Simple_repeat 2 76 0 7 1092 218 350 26 93 chr11 66497964 66498115 -55345741 + MIRm SINE MIR 91 231 -45 7 1092 715 264 33 11 chr11 66498192 66498376 -55345480 + MTE2b LTR MaLR 2 189 -190 7 1092 369 222 44 0 chr11 66498385 66498475 -55345381 + MLT1F2 LTR MaLR 129 222 -338 7 1092 225 0 0 0 chr11 66498475 66498500 -55345356 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1092 276 30 0 0 chr11 66498499 66498532 -55345324 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1092 189 74 0 0 chr11 66498535 66498562 -55345294 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1092 356 281 99 30 chr11 66498664 66498828 -55345028 + MLT1F2 LTR MaLR 360 629 -25 7 1092 476 272 29 0 chr11 66498958 66499061 -55344795 + PB1D7 SINE Alu 1 106 -14 7 1092 690 13 0 0 chr11 66499061 66499140 -55344716 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 7 1092 1094 214 10 5 chr11 66499484 66499691 -55344165 - ORR1D1 LTR MaLR 0 374 167 7 1092 369 75 0 0 chr11 66499715 66499768 -55344088 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 7 1092 243 0 0 0 chr11 66499830 66499857 -55343999 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1092 647 211 31 8 chr11 66499870 66499999 -55343857 + RLTR20B3 LTR ERVK 73 204 -373 7 1092 1287 231 38 19 chr11 66500000 66500314 -55343542 + RLTR20C LTR ERVK 215 534 0 1 1092 800 169 27 0 chr11 66500315 66500463 -55343393 - ORR1D1 LTR MaLR -222 152 1 2 1092 388 349 74 82 chr11 66502262 66502615 -55341241 - MER21B LTR ERV1 -60 803 454 3 1092 317 353 147 0 chr11 66502640 66502810 -55341046 - MER21B LTR ERV1 -459 404 210 3 1092 396 316 29 14 chr11 66503800 66503938 -55339918 + B1F1 SINE Alu 9 148 -1 4 1092 1679 186 72 83 chr11 66504958 66505132 -55338724 + ORR1C2 LTR MaLR 3 165 -219 5 1092 315 0 0 0 chr11 66505132 66505167 -55338689 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1092 351 0 0 0 chr11 66505167 66505205 -55338651 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1092 1679 186 72 83 chr11 66505205 66505415 -55338441 + ORR1C2 LTR MaLR 166 383 -1 5 1092 563 279 70 133 chr11 66506297 66506451 -55337405 + MLT1A LTR MaLR 2 121 -253 8 1092 708 0 0 0 chr11 66506451 66506533 -55337323 - L1Md_A LINE L1 0 6582 6501 9 1092 563 279 70 133 chr11 66506533 66506775 -55337081 + MLT1A LTR MaLR 122 373 -1 8 1092 303 317 28 106 chr11 66507122 66507443 -55336413 - Lx8 LINE L1 -2 7471 7176 1 1092 454 275 128 84 chr11 66509347 66509621 -55334235 + B4 SINE B4 3 288 -4 1 1092 501 17 0 0 chr11 66509784 66509842 -55334014 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 1092 525 223 301 0 chr11 66509932 66510098 -55333758 + B3 SINE B2 1 216 0 1 1092 2503 161 30 40 chr11 66510829 66511011 -55332845 - RMER4A LTR ERVK 0 466 298 1 1092 4452 35 108 0 chr11 66511011 66511520 -55332336 + LTRIS2 LTR ERV1 1 564 0 1 1092 2503 161 30 40 chr11 66511520 66511808 -55332048 - RMER4A LTR ERVK -169 297 1 1 1092 1563 44 22 16 chr11 66512219 66512404 -55331452 + B2_Mm1a SINE B2 4 189 -4 1 1092 1650 251 42 10 chr11 66512572 66512955 -55330901 + MTD LTR MaLR 10 404 -15 1 1092 2423 261 72 8 chr11 66512966 66513588 -55330268 - Lx8 LINE L1 -278 7195 6534 1 1092 22 70 0 0 chr11 66513698 66513741 -55330115 + AT_rich Low_complexity Low_complexity 1 43 0 1 1092 1070 259 132 34 chr11 66513911 66514238 -55329618 + ORR1E LTR MaLR 1 359 0 2 1092 824 301 39 42 chr11 66514904 66515265 -55328591 + L1MA10 LINE L1 5914 6273 -61 2 1092 402 359 42 26 chr11 66515732 66516110 -55327746 + ERVL-E-int LTR ERVL 829 1212 -3784 2 1092 567 188 0 0 chr11 66516141 66516253 -55327603 + GA-rich Low_complexity Low_complexity 3 114 0 2 1092 263 311 29 43 chr11 66516638 66516776 -55327080 + ERVL-E-int LTR ERVL 1740 1875 -3121 2 1092 958 358 70 32 chr11 66516881 66517594 -55326262 + ERVL-E-int LTR ERVL 1928 2667 -3000 2 1092 217 109 21 21 chr11 66517693 66517740 -55326116 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 2 1092 268 279 15 0 chr11 66517754 66517822 -55326034 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1092 424 302 38 15 chr11 66517893 66518024 -55325832 + MER5A DNA MER1_type 8 141 -48 2 1092 740 292 107 67 chr11 66518029 66518434 -55325422 + MTE2a LTR MaLR 1 405 -14 2 1092 4357 222 76 7 chr11 66518650 66519694 -55324162 - Lx9 LINE L1 -1 7643 6527 2 1092 39178 9 0 7 chr11 66519693 66524912 -55318944 + L1Md_A LINE L1 410 5586 -297 2 1092 9429 13 0 0 chr11 66524912 66525908 -55317948 + L1Md_A LINE L1 5587 6582 0 2 1092 2983 222 72 45 chr11 66525908 66527305 -55316551 - Lx9 LINE L1 -1104 6540 5068 2 1092 378 0 0 0 chr11 66528149 66528191 -55315665 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1092 333 102 0 0 chr11 66528191 66528249 -55315607 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1092 29 0 0 0 chr11 66528266 66528295 -55315561 + AT_rich Low_complexity Low_complexity 1 29 0 3 1092 243 88 0 0 chr11 66528602 66528636 -55315220 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1092 9097 26 1 6 chr11 66529139 66530142 -55313714 + L1Md_F3 LINE L1 5587 6584 0 3 1092 303 333 123 22 chr11 66530937 66531075 -55312781 + RSINE1 SINE B4 3 154 -11 3 1092 246 32 0 0 chr11 66531080 66531111 -55312745 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1092 468 196 0 0 chr11 66531164 66531343 -55312513 + GA-rich Low_complexity Low_complexity 2 180 0 3 1092 21 57 0 0 chr11 66531385 66531420 -55312436 + AT_rich Low_complexity Low_complexity 1 35 0 3 1092 808 251 44 53 chr11 66531486 66531692 -55312164 - B4A SINE B4 -4 288 85 3 1092 270 336 9 26 chr11 66531824 66531940 -55311916 + L1MB8 LINE L1 6018 6131 -47 4 1092 216 0 0 0 chr11 66532561 66532585 -55311271 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1092 225 208 75 0 chr11 66533089 66533142 -55310714 - ID_B1 SINE B4 0 224 168 4 1092 318 353 52 0 chr11 66533973 66534089 -55309767 - RSINE1 SINE B4 0 165 44 4 1092 318 244 54 54 chr11 66534161 66534291 -55309565 - L1MB1 LINE L1 -84 6105 5976 4 1092 366 75 29 15 chr11 66534491 66534559 -55309297 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 4 1092 309 229 104 9 chr11 66535210 66535316 -55308540 - L1MB1 LINE L1 -1053 5087 4972 4 1092 460 371 24 16 chr11 66536044 66536296 -55307560 - MIR SINE MIR -4 258 5 4 1092 522 274 62 31 chr11 66536955 66537117 -55306739 + Tigger15a DNA TcMar 163 329 -386 4 1092 370 240 154 16 chr11 66537128 66537251 -55306605 + Tigger15a DNA TcMar 390 529 -186 4 1092 641 142 16 16 chr11 66537346 66537359 -55306497 + Lx LINE L1 6524 6536 -118 4 1092 189 0 0 0 chr11 66537359 66537380 -55306476 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 4 1092 641 142 16 16 chr11 66537380 66537495 -55306361 + Lx LINE L1 6537 6651 -3 4 1092 266 320 68 0 chr11 66537871 66538018 -55305838 + MLT2F LTR ERVL 1 157 -506 5 1092 361 307 260 43 chr11 66538032 66538267 -55305589 + MLT2F LTR ERVL 251 536 -127 5 1092 352 320 92 11 chr11 66539357 66539531 -55304325 - MER5A DNA MER1_type 0 189 2 5 1092 564 320 210 23 chr11 66540582 66541062 -55302794 + MLT1G LTR MaLR 10 579 -12 5 1092 508 302 14 7 chr11 66541076 66541216 -55302640 + Lx8 LINE L1 7170 7310 -163 5 1092 33 25 0 0 chr11 66541314 66541354 -55302502 + AT_rich Low_complexity Low_complexity 1 40 0 5 1092 656 297 94 35 chr11 66541478 66541817 -55302039 - ORR1E LTR MaLR 0 359 1 5 1092 450 0 0 0 chr11 66542165 66542215 -55301641 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1092 312 102 0 0 chr11 66542215 66542263 -55301593 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1092 203 290 93 99 chr11 66543380 66543541 -55300315 - L2c LINE L2 -1 3386 3227 5 1092 238 298 11 106 chr11 66543995 66544089 -55299767 + RSINE1 SINE B4 2 86 -79 5 1092 1063 251 68 117 chr11 66544095 66544447 -55299409 - MTE2b LTR MaLR -41 338 4 6 1092 230 296 113 50 chr11 66545007 66545245 -55298611 + L1M6 LINE L1 1222 1474 -5022 6 1092 610 270 63 26 chr11 66545368 66545558 -55298298 + B3 SINE B2 1 197 -19 6 1092 373 195 26 13 chr11 66545561 66545639 -55298217 - MTD LTR MaLR -2 419 341 6 1092 714 162 8 15 chr11 66545648 66545780 -55298076 - B1_Mur3 SINE Alu 0 149 19 6 1092 540 293 8 16 chr11 66545780 66545905 -55297951 - MTD LTR MaLR -100 319 196 6 1092 444 201 52 37 chr11 66545905 66546039 -55297817 - Lx4A LINE L1 -5 7053 6918 6 1092 809 214 95 65 chr11 66546039 66546239 -55297617 - MTD LTR MaLR -194 225 20 6 1092 23 33 0 0 chr11 66546264 66546294 -55297562 + AT_rich Low_complexity Low_complexity 1 30 0 6 1092 356 349 164 60 chr11 66547643 66547932 -55295924 + MLT1F2 LTR MaLR 180 498 -62 6 1092 460 244 0 0 chr11 66547965 66548047 -55295809 - ID4_ SINE ID -1 82 1 6 1092 1284 297 95 14 chr11 66548395 66548993 -55294863 + L1MA4 LINE L1 5593 6242 -58 6 1092 267 259 87 67 chr11 66549497 66549646 -55294210 + MER5A1 DNA MER1_type 2 153 -13 7 1092 1090 240 0 0 chr11 66549834 66550042 -55293814 + B3 SINE B2 4 211 -5 7 1092 272 308 46 0 chr11 66550072 66550202 -55293654 + Lx6 LINE L1 7317 7452 -8 7 1092 3895 62 0 14 chr11 66550613 66551116 -55292740 - LTRIS2 LTR ERV1 0 564 69 7 1092 3272 21 5 0 chr11 66551124 66551511 -55292345 + MTA_Mm LTR MaLR 1 389 -7 7 1092 508 256 109 75 chr11 66551730 66552000 -55291856 - MTD LTR MaLR -14 405 147 7 1092 603 317 34 19 chr11 66552230 66552494 -55291362 + L2a LINE L2 2088 2355 -1064 7 1092 393 336 113 25 chr11 66553054 66553332 -55290524 + L2a LINE L2 3079 3413 -13 7 1092 232 178 0 22 chr11 66554020 66554066 -55289790 - MT2A LTR ERVL 0 533 489 7 1092 405 0 0 0 chr11 66554066 66554111 -55289745 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1092 620 352 19 38 chr11 66554226 66554489 -55289367 - MT2A LTR ERVL -110 423 166 7 1092 291 235 93 56 chr11 66554505 66554613 -55289243 - MTD LTR MaLR -267 112 1 7 1092 3192 33 22 0 chr11 66555879 66556241 -55287615 - L1Md_F3 LINE L1 -1 6583 6214 7 1092 1092 284 19 15 chr11 66556618 66556886 -55286970 - B4A SINE B4 -8 284 16 8 1092 198 0 0 0 chr11 66557895 66557917 -55285939 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1092 252 0 0 0 chr11 66559825 66559853 -55284003 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1092 387 0 0 0 chr11 66559853 66559895 -55283961 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1092 31 26 0 0 chr11 66559966 66560004 -55283852 + AT_rich Low_complexity Low_complexity 1 38 0 8 1092 1285 32 1 0 chr11 66560303 66560468 -55283388 - L1_Mus3 LINE L1 -736 5831 5666 8 1092 2188 71 11 0 chr11 66560470 66560753 -55283103 + L1_Mus3 LINE L1 5820 6105 -533 8 1092 349 319 142 3 chr11 66560889 66561235 -55282621 + L1ME3A LINE L1 5504 5897 -276 8 1092 459 228 43 92 chr11 66561309 66561473 -55282383 + RMER15 LTR ERVL 6 161 -414 8 1092 900 313 21 31 chr11 66561474 66561764 -55282092 + RMER15 LTR ERVL 287 573 -2 8 1092 457 289 35 130 chr11 66562391 66562622 -55281234 + ORR1E LTR MaLR 85 293 -66 8 1092 450 0 0 0 chr11 66562669 66562719 -55281137 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1092 312 230 67 22 chr11 66562725 66562814 -55281042 - ORR1E LTR MaLR -23 336 244 9 1092 1456 233 91 16 chr11 66563795 66564170 -55279686 + MTD LTR MaLR 5 407 -12 9 1092 22 0 0 0 chr11 66564194 66564216 -55279640 + AT_rich Low_complexity Low_complexity 1 22 0 9 1092 392 82 16 0 chr11 66564325 66564386 -55279470 + (ATTG)n Simple_repeat Simple_repeat 3 64 0 9 1092 348 337 36 50 chr11 66567395 66567700 -55276156 + LTR33A LTR ERVL 230 527 -4 9 1092 185 362 21 11 chr11 66570477 66570572 -55273284 - MER5A DNA MER1_type -93 96 1 9 1092 348 235 153 0 chr11 66570602 66570687 -55273169 + MER5A1 DNA MER1_type 41 138 -28 9 1092 1679 180 111 44 chr11 66571242 66571602 -55272254 - ORR1C2 LTR MaLR 0 384 1 9 1092 1521 85 16 0 chr11 66571891 66572079 -55271777 - B2_Mm2 SINE B2 -4 191 1 9 1092 498 87 65 0 chr11 66572277 66572415 -55271441 + (CA)n Simple_repeat Simple_repeat 1 147 0 9 1092 1244 29 0 0 chr11 66573931 66574067 -55269789 + B1_Mus1 SINE Alu 2 137 -11 1 1092 243 0 0 0 chr11 66574067 66574094 -55269762 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1092 203 371 72 0 chr11 66574101 66574198 -55269658 - L2 LINE L2 -955 2464 2361 1 1092 211 222 15 60 chr11 66576140 66576207 -55267649 - L2c LINE L2 -2 3385 3322 1 1092 279 79 0 0 chr11 66576664 66576702 -55267154 + (CTTG)n Simple_repeat Simple_repeat 1 38 0 1 1092 329 390 61 47 chr11 66577128 66577491 -55266365 - L2b LINE L2 -8 3367 3000 1 1092 247 320 60 112 chr11 66577767 66577883 -55265973 + PB1D10 SINE Alu 1 110 -7 1 1092 246 208 0 0 chr11 66577885 66577938 -55265918 + (ATGTG)n Simple_repeat Simple_repeat 5 57 0 1 1092 243 331 103 27 chr11 66578977 66579123 -55264733 - L2b LINE L2 -5 3370 3214 1 1092 274 174 0 42 chr11 66579259 66579331 -55264525 + GA-rich Low_complexity Low_complexity 2 70 0 1 1092 4864 107 50 5 chr11 66579396 66580137 -55263719 - L1_Mm LINE L1 -948 4935 4162 1 1092 30 59 0 0 chr11 66580184 66580235 -55263621 + AT_rich Low_complexity Low_complexity 1 51 0 1 1092 600 336 66 0 chr11 66580302 66580546 -55263310 - MER2 DNA MER2_type 0 345 86 1 1092 294 29 0 0 chr11 66580622 66580657 -55263199 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1092 447 232 40 144 chr11 66581151 66581283 -55262573 + B3A SINE B2 74 193 -5 1 1092 747 275 118 16 chr11 66581322 66581577 -55262279 - MTEa LTR MaLR -3 376 96 1 1092 632 282 29 0 chr11 66582231 66582401 -55261455 + Tigger5 DNA MER2_type 36 210 -2196 1 1092 379 275 37 86 chr11 66582539 66582702 -55261154 - MLT1H1 LTR MaLR -107 448 294 1 1092 695 12 12 0 chr11 66582848 66582934 -55260922 + L1Md_T LINE L1 6496 6582 0 1 1092 207 0 0 0 chr11 66583154 66583177 -55260679 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1092 668 269 6 70 chr11 66583265 66583437 -55260419 + RSINE1 SINE B4 3 163 -2 1 1092 661 265 0 30 chr11 66583536 66583703 -55260153 + RSINE1 SINE B4 4 165 0 1 1092 408 261 78 2 chr11 66583752 66583860 -55259996 + PB1D10 SINE Alu 1 115 -2 1 1092 26 0 0 0 chr11 66584285 66584311 -55259545 + AT_rich Low_complexity Low_complexity 1 26 0 1 1093 205 286 24 72 chr11 66585218 66585301 -55258555 - MIR SINE MIR -152 110 32 1 1093 240 252 29 187 chr11 66585383 66585402 -55258454 - MT2A LTR ERVL -389 144 1 1 1093 640 248 26 20 chr11 66585402 66585554 -55258302 - MTD LTR MaLR -266 153 1 1 1093 2248 151 6 25 chr11 66586122 66586475 -55257381 - Lx3C LINE L1 -8 6968 6623 1 1093 1850 117 20 34 chr11 66586475 66586768 -55257088 + Lx3C LINE L1 6345 6633 -343 1 1093 538 279 91 40 chr11 66586973 66587249 -55256607 - Charlie25 DNA MER1_type -557 1967 1678 1 1093 2020 131 15 114 chr11 66587665 66588061 -55255795 - ORR1B1 LTR MaLR 0 394 38 1 1093 412 241 50 57 chr11 66588205 66588346 -55255510 - MLT1A1 LTR MaLR -11 397 258 1 1093 239 329 39 45 chr11 66588714 66588892 -55254964 - HAL1 LINE L1 -744 1763 1587 1 1093 228 276 0 17 chr11 66589009 66589068 -55254788 + CT-rich Low_complexity Low_complexity 1 58 0 1 1093 5221 36 0 0 chr11 66589363 66589942 -55253914 - L1Md_T LINE L1 -1 6581 6003 1 1093 360 0 0 0 chr11 66590382 66590422 -55253434 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1093 441 0 0 0 chr11 66590422 66590470 -55253386 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1093 740 255 94 58 chr11 66590519 66590794 -55253062 - RMER21B LTR ERV1 -275 567 283 1 1093 1464 34 0 0 chr11 66590915 66591093 -55252763 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1093 673 200 78 20 chr11 66591253 66591406 -55252450 - MTC LTR MaLR -259 162 1 1 1093 226 283 33 0 chr11 66591828 66591888 -55251968 + MLT1A0 LTR MaLR 80 141 -224 1 1093 405 294 105 49 chr11 66591870 66592174 -55251682 + ORR1E LTR MaLR 11 354 -5 1 1093 182 279 72 14 chr11 66592183 66592252 -55251604 + L3 LINE CR1 3519 3591 -898 1 1093 2362 282 59 14 chr11 66592703 66593330 -55250526 + MER44C DNA MER2_type 6 660 -73 1 1093 805 265 18 13 chr11 66593457 66593659 -55250197 + ID_B1 SINE B4 29 230 -62 1 1093 271 294 53 124 chr11 66593712 66593995 -55249861 - ORR1E LTR MaLR -46 313 51 1 1093 598 274 19 13 chr11 66594283 66594467 -55249389 + B3A SINE B2 1 187 -8 1 1093 993 326 84 72 chr11 66594462 66594554 -55249302 - Charlie25 DNA MER1_type -1288 1236 1149 1 1093 405 58 0 0 chr11 66594554 66594606 -55249250 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1093 993 326 84 72 chr11 66594606 66595194 -55248662 - Charlie25 DNA MER1_type -1376 1148 548 1 1093 291 54 0 0 chr11 66595239 66595276 -55248580 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 1093 576 334 73 35 chr11 66595405 66595975 -55247881 - L1MC3 LINE L1 -138 7857 7054 1 1093 1493 249 152 21 chr11 66596164 66596828 -55247028 - L1MC3 LINE L1 -1941 6054 5304 1 1093 852 281 34 57 chr11 66596943 66597161 -55246695 - L1MC3 LINE L1 -1074 5072 4851 1 1093 477 0 0 0 chr11 66597161 66597214 -55246642 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1093 852 281 34 57 chr11 66597214 66597383 -55246473 - L1MC3 LINE L1 -1296 4850 4694 1 1093 684 0 0 0 chr11 66597477 66597553 -55246303 + (GTTTG)n Simple_repeat Simple_repeat 1 76 0 1 1093 10728 21 0 0 chr11 66597631 66599531 -55244325 - L1Md_T LINE L1 0 6582 4683 1 1093 7252 20 0 0 chr11 66599527 66600355 -55243501 + L1Md_T LINE L1 3859 4686 -1197 1 1093 277 277 15 0 chr11 66600355 66600420 -55243436 - B1F SINE Alu -83 66 1 1 1093 362 256 32 8 chr11 66600437 66600563 -55243293 - L1MC3 LINE L1 -1476 4670 4542 1 1093 1377 199 186 25 chr11 66600605 66601063 -55242793 + RMER4B LTR ERVK 1 585 0 1 1093 887 337 42 24 chr11 66601085 66601680 -55242176 - L1MC3 LINE L1 -1665 4481 3876 1 1093 240 98 79 32 chr11 66601689 66601752 -55242104 + T-rich Low_complexity Low_complexity 5 70 0 1 1093 275 273 26 55 chr11 66601754 66601909 -55241947 - L1M4 LINE L1 -2262 3884 3736 1 1093 268 264 127 70 chr11 66601993 66602221 -55241635 - L1MC3 LINE L1 -2575 3571 3331 1 1093 490 259 58 22 chr11 66602238 66602376 -55241480 - B1F SINE Alu 0 149 7 1 1093 227 306 104 35 chr11 66602514 66602629 -55241227 - PB1 SINE Alu -4 123 1 1 1093 279 336 121 74 chr11 66603667 66604030 -55239826 - Charlie25 DNA MER1_type -2096 428 49 1 1093 640 291 90 29 chr11 66604232 66604576 -55239280 - MLT1A0 LTR MaLR 0 365 1 1 1093 530 250 89 0 chr11 66605046 66605158 -55238698 + B1F SINE Alu 2 123 -26 1 1093 1130 269 56 4 chr11 66605295 66605564 -55238292 - B4A SINE B4 -9 283 1 1 1093 942 287 146 51 chr11 66605683 66606478 -55237378 - L1MB3 LINE L1 -62 6121 5214 1 1093 384 372 101 32 chr11 66606580 66606888 -55236968 - MER20B DNA MER1_type -335 448 120 1 1093 26216 151 17 19 chr11 66607191 66607787 -55236069 - L1Md_F3 LINE L1 -709 5875 5289 1 1093 6753 61 6 6 chr11 66607787 66608613 -55235243 - L1_Mus2 LINE L1 0 6566 5741 1 1093 26216 113 14 13 chr11 66608613 66612674 -55231182 - L1Md_F3 LINE L1 -595 5288 1241 1 1093 353 39 20 0 chr11 66612674 66612725 -55231131 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 1 1093 14677 154 76 24 chr11 66612725 66613513 -55230343 - L1Md_F3 LINE L1 -5394 1240 425 1 1093 243 200 81 70 chr11 66613689 66613775 -55230081 + MLT1A1 LTR MaLR 318 404 -4 1 1093 363 372 87 32 chr11 66614125 66614564 -55229292 + L4 LINE RTE 1154 1616 -413 1 1093 185 235 0 0 chr11 66614911 66614945 -55228911 + L4 LINE RTE 1981 2014 -15 1 1093 428 252 161 15 chr11 66615496 66615701 -55228155 - Lx8 LINE L1 -9 7464 7230 1 1093 237 276 145 61 chr11 66615928 66616059 -55227797 - ORR1E LTR MaLR -211 148 7 1 1093 225 94 0 0 chr11 66616104 66616136 -55227720 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1 1093 2136 122 14 23 chr11 66616155 66616506 -55227350 - Lx4B LINE L1 -70 6988 6641 1 1093 326 281 83 35 chr11 66616953 66617097 -55226759 - MER117 DNA MER1_type -46 151 1 1 1093 307 372 0 16 chr11 66618045 66618168 -55225688 + L2c LINE L2 3267 3387 0 1 1093 686 326 46 67 chr11 66618699 66619090 -55224766 + MLT1B LTR MaLR 1 383 -7 1 1093 597 299 48 97 chr11 66619417 66619706 -55224150 + B4A SINE B4 10 284 -8 1 1093 692 71 10 0 chr11 66619744 66619843 -55224013 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 1 1093 856 175 240 0 chr11 66619843 66620014 -55223842 + B3 SINE B2 3 214 -2 1 1093 242 330 31 10 chr11 66620049 66620147 -55223709 - MIRm SINE MIR -142 134 35 1 1093 195 204 0 0 chr11 66620314 66620363 -55223493 + CT-rich Low_complexity Low_complexity 2 50 0 1 1093 334 299 57 13 chr11 66620801 66620960 -55222896 + L1MCb LINE L1 115 280 -5765 1 1093 528 293 92 10 chr11 66621000 66621023 -55222833 + Lx8 LINE L1 7002 7029 -444 1 1093 425 66 0 16 chr11 66621023 66621085 -55222771 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1093 528 293 92 10 chr11 66621085 66621268 -55222588 + Lx8 LINE L1 7030 7224 -249 1 1093 288 276 44 44 chr11 66621272 66621363 -55222493 + RMER15 LTR ERVL 371 461 -114 1 1093 267 331 97 17 chr11 66621472 66621771 -55222085 + L1MCb LINE L1 275 638 -6113 1 1093 263 294 0 58 chr11 66621771 66621959 -55221897 + (CACTA)n Simple_repeat Simple_repeat 2 178 0 1 1093 627 290 74 6 chr11 66622058 66622074 -55221782 - B3A SINE B2 -23 175 160 1 1093 522 0 0 0 chr11 66622074 66622132 -55221724 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1093 627 290 74 6 chr11 66622132 66622278 -55221578 - B3A SINE B2 -39 159 3 1 1093 225 154 0 0 chr11 66622552 66622591 -55221265 + MLT2B5 LTR ERVL 1 39 -678 1 1093 382 288 34 29 chr11 66623474 66623678 -55220178 + MusHAL1 LINE L1 238 442 -2270 1 1093 376 385 45 20 chr11 66623700 66623899 -55219957 - MLT1K LTR MaLR -364 231 28 1 1093 252 86 0 0 chr11 66624184 66624219 -55219637 + (TAA)n Simple_repeat Simple_repeat 1 35 0 1 1093 318 106 0 0 chr11 66625251 66625298 -55218558 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 1093 402 21 0 0 chr11 66625305 66625352 -55218504 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1093 550 277 140 58 chr11 66625680 66626009 -55217847 + Lx8 LINE L1 7116 7471 -2 1 1093 351 0 0 0 chr11 66627837 66627876 -55215980 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1093 432 0 0 0 chr11 66627876 66627923 -55215933 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1093 327 344 67 36 chr11 66628224 66628417 -55215439 - LTR89 LTR ERVL? -5 874 676 1 1093 313 333 90 10 chr11 66628553 66628753 -55215103 - Lx8 LINE L1 -59 7414 7199 1 1093 757 257 22 45 chr11 66628826 66629050 -55214806 + L1_Mur3 LINE L1 5358 5576 -304 2 1093 333 0 0 0 chr11 66629182 66629219 -55214637 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2 1093 238 303 10 101 chr11 66629220 66629319 -55214537 - B1F1 SINE Alu -59 90 1 2 1093 314 283 75 11 chr11 66629237 66629330 -55214526 - ID_B1 SINE B4 -61 163 65 2 1093 355 270 1 2 chr11 66630015 66630100 -55213756 + B4A SINE B4 10 93 -72 2 1093 802 214 21 0 chr11 66630550 66630690 -55213166 + B1_Mur3 SINE Alu 1 143 -6 2 1093 330 98 0 0 chr11 66630711 66630762 -55213094 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1093 441 0 0 0 chr11 66631065 66631114 -55212742 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1093 272 361 10 0 chr11 66631925 66632022 -55211834 + MER81 DNA AcHobo 5 102 -12 2 1093 279 264 22 44 chr11 66632026 66632117 -55211739 + MLT1A1 LTR MaLR 1 89 -319 2 1093 180 77 0 0 chr11 66632118 66632144 -55211712 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1093 279 0 0 0 chr11 66632147 66632178 -55211678 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1093 6567 179 68 27 chr11 66632179 66633515 -55210341 - Lx2B LINE L1 -10 6990 5600 2 1093 2307 143 11 265 chr11 66633511 66634300 -55209556 + Lx2B LINE L1 5034 5622 -255 2 1093 414 300 106 56 chr11 66634484 66634825 -55209031 - ORR1E LTR MaLR 0 379 7 2 1093 227 221 167 13 chr11 66634796 66634874 -55208982 + MLT1A1 LTR MaLR 282 371 -19 2 1093 644 278 58 105 chr11 66635372 66635629 -55208227 - ORR1E LTR MaLR 0 359 115 2 1093 342 45 0 0 chr11 66635713 66635757 -55208099 + (CAG)n Simple_repeat Simple_repeat 1 44 0 2 1093 334 340 0 0 chr11 66635916 66636013 -55207843 - ORR1E LTR MaLR -262 97 1 2 1093 336 299 13 0 chr11 66637808 66637885 -55205971 - ID SINE ID -146 78 1 2 1093 970 321 58 33 chr11 66638115 66638514 -55205342 + Arthur1 DNA Tip100 162 570 -3377 2 1093 218 291 19 46 chr11 66638694 66638802 -55205054 + CT-rich Low_complexity Low_complexity 3 107 0 2 1093 504 308 51 61 chr11 66638812 66639026 -55204830 - MER20 DNA MER1_type -7 212 1 2 1093 225 279 0 0 chr11 66639275 66639343 -55204513 + Lx8 LINE L1 6967 7034 -439 2 1093 1887 247 73 78 chr11 66639345 66639920 -55203936 + RMER15 LTR ERVL 4 575 0 2 1093 287 336 8 15 chr11 66639966 66640096 -55203760 + (CATA)n Simple_repeat Simple_repeat 2 130 0 2 1093 255 261 12 198 chr11 66640096 66640263 -55203593 + RMER15 LTR ERVL 3 138 -437 2 1093 1359 263 66 23 chr11 66640377 66640816 -55203040 + RLTR16 LTR ERVK 45 502 -3 2 1093 359 121 325 0 chr11 66640829 66640912 -55202944 + RMER15 LTR ERVL 372 481 -94 2 1093 215 277 0 0 chr11 66640964 66641029 -55202827 + (CATA)n Simple_repeat Simple_repeat 1 65 0 2 1093 332 320 6 22 chr11 66641104 66641283 -55202573 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 2 1093 3007 22 0 0 chr11 66641292 66641614 -55202242 - RLTRETN_Mm LTR ERVK 0 322 1 2 1093 263 250 11 23 chr11 66641699 66641875 -55201981 + (CATA)n Simple_repeat Simple_repeat 4 177 0 2 1093 198 0 0 0 chr11 66643146 66643168 -55200688 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 1093 216 0 0 0 chr11 66643168 66643191 -55200665 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1093 239 336 57 9 chr11 66643299 66643404 -55200452 - MER5B DNA MER1_type 0 178 69 2 1093 2182 199 32 5 chr11 66643581 66643794 -55200062 - MTD LTR MaLR 0 419 206 2 1093 306 0 0 0 chr11 66643794 66643828 -55200028 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1093 2182 199 32 5 chr11 66643828 66644022 -55199834 - MTD LTR MaLR -214 205 3 2 1093 1153 156 73 0 chr11 66644772 66644990 -55198866 + RMER4B LTR ERVK 17 250 -335 2 1093 241 246 14 14 chr11 66645001 66645071 -55198785 + (CTG)n Simple_repeat Simple_repeat 1 70 0 2 1093 432 279 15 37 chr11 66645836 66645970 -55197886 + RMER15 LTR ERVL 295 425 -150 2 1093 939 130 7 0 chr11 66645969 66646107 -55197749 + B2_Mm2 SINE B2 19 157 -38 2 1093 549 110 0 0 chr11 66646107 66646189 -55197667 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 2 1093 452 256 41 41 chr11 66646194 66646316 -55197540 + RMER15 LTR ERVL 454 575 0 2 1093 306 0 0 0 chr11 66646961 66646995 -55196861 + (TAA)n Simple_repeat Simple_repeat 1 34 0 2 1093 200 216 0 56 chr11 66647148 66647202 -55196654 + CT-rich Low_complexity Low_complexity 1 51 0 2 1093 444 226 145 0 chr11 66647636 66647760 -55196096 - B1_Mur2 SINE Alu 0 149 8 2 1093 355 304 66 15 chr11 66648765 66648902 -55194954 - L2 LINE L2 -1784 1635 1492 2 1093 958 82 34 0 chr11 66648902 66649048 -55194808 + L1_Mus4 LINE L1 6462 6612 -24 2 1093 255 61 0 0 chr11 66649048 66649081 -55194775 + U2 snRNA snRNA 1 33 -155 2 1093 204 247 85 12 chr11 66649400 66649482 -55194374 - L2 LINE L2 -2361 1058 971 2 1093 366 358 131 29 chr11 66649570 66650013 -55193843 - L2 LINE L2 -2920 499 12 2 1093 205 290 31 41 chr11 66650021 66650118 -55193738 + MIRb SINE MIR 115 210 -58 2 1093 879 136 11 17 chr11 66650895 66651075 -55192781 + GA-rich Low_complexity Low_complexity 2 180 0 2 1093 2219 118 45 0 chr11 66651608 66651921 -55191935 + ORR1A2 LTR MaLR 1 327 0 2 1093 1259 223 21 0 chr11 66652196 66652434 -55191422 + Lx5 LINE L1 6740 6982 -68 2 1093 283 304 139 12 chr11 66652952 66653112 -55190744 - L1MB5 LINE L1 -15 6159 5996 2 1093 1610 210 125 5 chr11 66653127 66653544 -55190312 - RCHARR1 DNA MER1_type -250 724 258 2 1093 627 241 105 0 chr11 66654072 66654205 -55189651 - B1F1 SINE Alu -1 148 2 2 1093 279 350 19 19 chr11 66654502 66654607 -55189249 + L4 LINE RTE 1277 1381 -648 2 1093 473 235 78 0 chr11 66654630 66654732 -55189124 + PB1D10 SINE Alu 2 111 -6 2 1093 574 252 0 0 chr11 66654803 66654928 -55188928 + ID_B1 SINE B4 83 203 -21 2 1093 450 53 0 0 chr11 66654937 66654994 -55188862 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 2 1093 580 267 87 0 chr11 66655003 66655153 -55188703 + B3 SINE B2 41 203 -13 2 1093 773 292 152 0 chr11 66655213 66655555 -55188301 + L1MA5 LINE L1 5903 6296 -4 2 1093 334 217 58 0 chr11 66655937 66656006 -55187850 + ID2 SINE ID 2 74 -9 2 1093 205 356 23 0 chr11 66656045 66656132 -55187724 + L2a LINE L2 3281 3369 -57 2 1093 27 0 0 0 chr11 66656353 66656380 -55187476 + AT_rich Low_complexity Low_complexity 1 27 0 2 1093 270 0 0 0 chr11 66656480 66656510 -55187346 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 2 1093 463 283 0 28 chr11 66656649 66656758 -55187098 + PB1D10 SINE Alu 1 106 -11 2 1093 324 0 0 0 chr11 66656759 66656795 -55187061 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1093 21 0 0 0 chr11 66656890 66656911 -55186945 + AT_rich Low_complexity Low_complexity 1 21 0 2 1093 504 260 65 15 chr11 66656946 66657145 -55186711 + L1M2 LINE L1 4536 4744 -1399 2 1093 753 259 51 47 chr11 66657145 66657317 -55186539 + B4 SINE B4 57 221 -71 2 1093 1087 109 0 11 chr11 66657317 66657493 -55186363 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 2 1093 753 259 51 47 chr11 66657493 66657555 -55186301 + B4 SINE B4 222 291 -1 2 1093 205 152 0 0 chr11 66657582 66657615 -55186241 + GA-rich Low_complexity Low_complexity 2 34 0 2 1093 21 36 0 0 chr11 66657665 66657693 -55186163 + AT_rich Low_complexity Low_complexity 1 28 0 2 1093 208 348 0 0 chr11 66657864 66657933 -55185923 - MER91B DNA Tip100 -25 165 97 2 1093 270 106 0 0 chr11 66658185 66658232 -55185624 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 2 1093 274 234 8 8 chr11 66658251 66658380 -55185476 + (TG)n Simple_repeat Simple_repeat 2 130 0 2 1093 671 172 0 16 chr11 66658431 66658614 -55185242 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1093 447 226 0 0 chr11 66658652 66658816 -55185040 + (TG)n Simple_repeat Simple_repeat 1 164 0 2 1093 379 258 44 124 chr11 66658897 66659034 -55184822 + B3A SINE B2 91 216 0 2 1093 406 336 53 18 chr11 66659142 66659369 -55184487 + L1ME2 LINE L1 5553 5787 -377 2 1093 256 305 15 30 chr11 66659378 66659513 -55184343 + L1ME2 LINE L1 6031 6163 -1 2 1093 227 203 0 15 chr11 66660107 66660172 -55183684 + CT-rich Low_complexity Low_complexity 3 66 0 2 1093 189 175 0 0 chr11 66660545 66660585 -55183271 + (TTG)n Simple_repeat Simple_repeat 3 42 0 2 1093 432 279 16 32 chr11 66660960 66661123 -55182733 + L1MB3 LINE L1 5655 5811 -369 2 1093 449 287 0 9 chr11 66661128 66661237 -55182619 + PB1D10 SINE Alu 10 117 0 2 1093 554 304 65 12 chr11 66661257 66661503 -55182353 + L1MB3 LINE L1 5858 6116 -67 2 1093 210 250 65 32 chr11 66661905 66661967 -55181889 + PB1D10 SINE Alu 31 94 -23 2 1093 516 208 50 0 chr11 66661913 66662014 -55181842 + ID_B1 SINE B4 118 223 -1 2 1093 723 304 78 33 chr11 66662113 66662508 -55181348 + HAL1 LINE L1 1282 1694 -813 2 1093 221 303 15 0 chr11 66662800 66662866 -55180990 - L2 LINE L2 -1021 2398 2332 2 1093 329 291 117 39 chr11 66663073 66663191 -55180665 + RMER15 LTR ERVL 371 498 -77 2 1093 2011 201 77 8 chr11 66663191 66663583 -55180273 + MTD LTR MaLR 1 419 0 2 1093 329 291 117 39 chr11 66663583 66663618 -55180238 + RMER15 LTR ERVL 499 536 -39 2 1093 512 333 69 0 chr11 66663767 66663941 -55179915 + Lx8 LINE L1 7134 7319 -154 2 1093 602 290 96 5 chr11 66664728 66664915 -55178941 + MER44D DNA MER2_type 20 223 -482 2 1093 844 278 45 5 chr11 66664929 66665153 -55178703 + MER44D DNA MER2_type 467 698 -7 2 1093 2982 197 141 15 chr11 66665242 66665897 -55177959 + RMER19A LTR ERVK 1 737 0 2 1093 867 113 108 43 chr11 66666674 66666813 -55177043 + B1_Mus1 SINE Alu 1 148 0 2 1093 640 254 81 43 chr11 66666843 66667077 -55176779 - Lx8 LINE L1 -44 7429 7187 2 1093 588 95 0 0 chr11 66667189 66667273 -55176583 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1093 197 234 59 59 chr11 66667345 66667413 -55176443 + L2a LINE L2 3354 3421 -5 2 1093 1720 173 48 15 chr11 66668292 66668626 -55175230 - ORR1D1 LTR MaLR -1 373 29 2 1093 2105 98 3 12 chr11 66668647 66668969 -55174887 - ORR1A2 LTR MaLR -8 319 1 2 1093 367 258 0 11 chr11 66669177 66669271 -55174585 + PB1D10 SINE Alu 24 116 -1 2 1093 939 251 0 5 chr11 66669464 66669668 -55174188 + MTD LTR MaLR 2 204 -215 2 1093 1516 184 38 35 chr11 66669674 66669989 -55173867 + Lx7 LINE L1 7092 7407 -289 2 1093 303 108 10 0 chr11 66670001 66670078 -55173778 + RMER6A LTR ERVK 3 151 -539 2 1093 443 196 21 0 chr11 66670074 66670171 -55173685 + MTD LTR MaLR 321 419 0 2 1093 328 200 15 0 chr11 66670171 66670233 -55173623 + ID_B1 SINE B4 160 222 -2 2 1093 290 346 142 0 chr11 66670795 66670922 -55172934 - MER5B DNA MER1_type -33 145 1 3 1093 555 286 69 0 chr11 66671022 66671225 -55172631 - Tigger1 DNA MER2_type -12 2406 2190 3 1093 315 104 0 0 chr11 66671794 66671842 -55172014 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 3 1093 247 340 0 30 chr11 66672284 66672384 -55171472 - L2 LINE L2 -2051 1368 1272 3 1093 360 278 122 20 chr11 66672622 66672769 -55171087 - MLT2B1 LTR ERVL -12 555 394 3 1093 239 281 86 55 chr11 66675004 66675132 -55168724 + RMER15 LTR ERVL 1 132 -443 3 1093 395 301 28 14 chr11 66675165 66675310 -55168546 + RMER15 LTR ERVL 275 421 -154 3 1093 498 17 0 0 chr11 66675685 66675744 -55168112 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1093 2910 146 12 50 chr11 66675770 66676288 -55167568 + RLTR19 LTR ERVK 1 498 -1 3 1093 482 298 126 13 chr11 66676368 66676606 -55167250 - MLT1A0 LTR MaLR -68 297 33 3 1093 199 228 56 122 chr11 66676732 66676822 -55167034 + L2b LINE L2 3240 3323 -52 3 1093 302 296 65 19 chr11 66677255 66677410 -55166446 - MIRb SINE MIR -45 223 62 3 1093 473 0 18 0 chr11 66677494 66677551 -55166305 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1093 189 0 0 0 chr11 66678145 66678166 -55165690 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1093 5530 2 0 0 chr11 66678659 66679257 -55164599 - L1Md_A LINE L1 0 6582 5985 3 1093 301 161 177 0 chr11 66679566 66679628 -55164228 - ID4_ SINE ID -9 74 2 3 1093 292 346 7 29 chr11 66679632 66679772 -55164084 - MIR SINE MIR -125 137 1 3 1093 348 83 0 0 chr11 66680267 66680315 -55163541 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 3 1093 510 229 30 15 chr11 66680498 66680631 -55163225 - MTEb LTR MaLR -2 377 243 3 1093 1111 263 45 19 chr11 66680622 66680936 -55162920 - MTEa LTR MaLR -57 322 1 3 1093 286 267 50 58 chr11 66681103 66681242 -55162614 - MIRb SINE MIR -75 193 56 3 1093 206 281 65 37 chr11 66681383 66681490 -55162366 - MIRm SINE MIR -126 150 34 3 1093 263 219 124 96 chr11 66682367 66682515 -55161341 - MIR SINE MIR -126 150 6 3 1093 561 267 91 19 chr11 66683186 66683396 -55160460 - LTR85a LTR Gypsy? -467 235 11 3 1093 1086 202 5 29 chr11 66684614 66684823 -55159033 + B3 SINE B2 2 205 -11 3 1093 295 287 69 10 chr11 66684974 66685076 -55158780 + MamRep4096 DNA hAT? 316 423 -3 3 1093 429 54 0 0 chr11 66685503 66685559 -55158297 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1093 3092 336 65 38 chr11 66687032 66688887 -55154969 - MERVK26-int LTR ERVK -56 6863 4961 3 1093 477 0 0 0 chr11 66688887 66688940 -55154916 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1093 3092 337 59 27 chr11 66688940 66690471 -55153385 - MERVK26-int LTR ERVK -1959 4960 3379 3 1093 477 0 0 0 chr11 66691621 66691674 -55152182 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 3 1093 393 257 55 9 chr11 66691679 66691789 -55152067 - PB1D10 SINE Alu 0 117 3 3 1093 229 275 40 99 chr11 66691707 66691808 -55152048 - MT2B2 LTR ERVL -340 244 150 3 1093 657 119 0 0 chr11 66692401 66692502 -55151354 + (GAAA)n Simple_repeat Simple_repeat 2 102 0 3 1093 812 70 17 0 chr11 66692517 66692632 -55151224 + (GGAAA)n Simple_repeat Simple_repeat 5 121 0 3 1093 1192 261 62 16 chr11 66692634 66692942 -55150914 - MTEa LTR MaLR -57 322 1 3 1093 940 132 21 7 chr11 66693044 66693189 -55150667 + B1_Mur3 SINE Alu 1 147 -2 3 1093 301 312 12 0 chr11 66693256 66693336 -55150520 + LTR84b LTR ERVL 650 730 -31 3 1093 677 263 0 0 chr11 66694167 66694319 -55149537 + B3A SINE B2 5 156 -42 3 1093 410 0 0 20 chr11 66694325 66694376 -55149480 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1093 180 0 0 0 chr11 66694400 66694420 -55149436 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1093 576 281 169 24 chr11 66694508 66694756 -55149100 + B4A SINE B4 9 292 0 3 1093 245 345 34 34 chr11 66694940 66695174 -55148682 - MamRep605 Unknown Unknown -504 372 139 3 1093 210 311 136 24 chr11 66696499 66696624 -55147232 - MIRb SINE MIR -63 205 67 3 1093 873 296 4 17 chr11 66696922 66697156 -55146700 + MLT1D LTR MaLR 271 501 -4 3 1093 600 103 0 0 chr11 66697442 66697549 -55146307 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 1093 498 219 226 47 chr11 66698016 66698251 -55145605 - MamRep605 Unknown Unknown -579 297 21 3 1093 780 314 52 43 chr11 66699039 66699368 -55144488 - MER2 DNA MER2_type -5 340 9 3 1093 371 83 17 0 chr11 66699627 66699687 -55144169 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1093 376 309 0 0 chr11 66699705 66699799 -55144057 - RSINE1 SINE B4 -69 96 3 3 1093 229 295 15 44 chr11 66702250 66702385 -55141471 + MLT1A1 LTR MaLR 2 132 -276 3 1093 659 224 11 43 chr11 66702490 66702677 -55141179 - ORR1E-int LTR MaLR -1399 181 1 3 1093 849 272 40 32 chr11 66702690 66702941 -55140915 + MTE2b LTR MaLR 3 255 -124 3 1093 267 281 17 34 chr11 66703017 66703135 -55140721 - ORR1E LTR MaLR -8 371 256 3 1093 306 356 0 8 chr11 66703157 66703287 -55140569 - ORR1E LTR MaLR -230 129 1 3 1093 278 375 0 32 chr11 66703337 66703461 -55140395 - MER5A1 DNA MER1_type 0 166 47 3 1093 572 217 15 8 chr11 66703511 66703641 -55140215 - ID_B1 SINE B4 -14 210 80 3 1093 1412 188 63 49 chr11 66703756 66703881 -55139975 - Lx5 LINE L1 0 7050 6912 3 1093 405 0 0 0 chr11 66703881 66703926 -55139930 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1093 1412 188 63 49 chr11 66703926 66704147 -55139709 - Lx5 LINE L1 -139 6911 6700 3 1093 587 274 89 0 chr11 66704921 66705100 -55138756 - MER3 DNA MER1_type 0 209 15 3 1093 1377 68 23 0 chr11 66705459 66705636 -55138220 + B2_Mm2 SINE B2 1 181 -14 3 1093 225 0 0 0 chr11 66706080 66706105 -55137751 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 3 1093 4183 203 48 116 chr11 66706264 66707846 -55136010 + RMER1A Other Other 1 883 -147 3 1093 306 0 0 0 chr11 66707846 66707880 -55135976 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1093 4183 169 31 153 chr11 66707880 66707997 -55135859 + RMER1A Other Other 884 1026 -4 3 1093 330 145 71 18 chr11 66708087 66708256 -55135600 + (TA)n Simple_repeat Simple_repeat 1 178 0 3 1093 508 363 26 21 chr11 66708267 66708644 -55135212 - L1M2 LINE L1 -894 5249 4871 3 1093 496 267 63 78 chr11 66708655 66708846 -55135010 + Lx8 LINE L1 7284 7471 -2 3 1093 856 262 101 7 chr11 66708872 66709168 -55134688 - L1M2 LINE L1 -1289 4854 4531 3 1093 405 184 26 0 chr11 66709171 66709247 -55134609 + Lx9 LINE L1 6970 7047 -597 3 1093 213 39 0 0 chr11 66709284 66709310 -55134546 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1093 990 214 15 10 chr11 66709325 66709523 -55134333 - B3 SINE B2 -17 199 1 3 1093 1021 293 183 42 chr11 66709523 66710071 -55133785 - L1M2 LINE L1 -3135 3008 2364 3 1093 4790 46 3 23 chr11 66710071 66710674 -55133182 - L1Md_F2 LINE L1 -13 6569 5979 3 1093 679 293 183 42 chr11 66710674 66710694 -55133162 - L1M2 LINE L1 -3517 2363 2306 3 1093 1555 192 100 26 chr11 66710694 66710877 -55132979 + MTD LTR MaLR 1 193 -226 3 1093 366 0 36 18 chr11 66710877 66710932 -55132924 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 3 1093 1555 192 100 26 chr11 66710932 66711138 -55132718 + MTD LTR MaLR 194 419 0 3 1093 679 293 183 42 chr11 66711138 66711353 -55132503 - L1M2 LINE L1 -3575 2305 2080 3 1093 597 14 0 0 chr11 66711374 66711444 -55132412 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1093 636 258 60 33 chr11 66712025 66712209 -55131647 + B3A SINE B2 3 191 -7 3 1093 231 290 0 0 chr11 66712244 66712313 -55131543 + BC1_Mm scRNA scRNA 28 96 -56 3 1093 980 200 28 32 chr11 66712327 66712544 -55131312 + B3 SINE B2 1 216 0 3 1093 441 158 0 0 chr11 66712879 66712980 -55130876 + GA-rich Low_complexity Low_complexity 2 102 0 3 1093 224 242 32 0 chr11 66713943 66714005 -55129851 + MER5A DNA MER1_type 123 186 -3 3 1093 590 176 35 0 chr11 66714026 66714196 -55129660 + (CATA)n Simple_repeat Simple_repeat 3 178 0 3 1093 398 327 92 101 chr11 66714212 66714549 -55129307 + MER21B LTR ERV1 320 653 -210 3 1093 1228 225 106 23 chr11 66715136 66715486 -55128370 - MTE2b LTR MaLR 0 379 1 3 1094 418 191 93 19 chr11 66716334 66716441 -55127415 + PB1D10 SINE Alu 2 116 -1 3 1094 255 31 0 0 chr11 66716952 66716984 -55126872 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1094 1905 186 46 20 chr11 66716985 66717379 -55126477 + MTC LTR MaLR 18 421 0 3 1094 1089 62 7 58 chr11 66717542 66717697 -55126159 + B1_Mus1 SINE Alu 2 148 0 3 1094 21 0 0 0 chr11 66717862 66717883 -55125973 + GC_rich Low_complexity Low_complexity 1 21 0 3 1094 423 0 0 0 chr11 66718305 66718352 -55125504 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1094 511 292 140 13 chr11 66718453 66718682 -55125174 + MLT1F1 LTR MaLR 280 558 -11 3 1094 441 281 80 40 chr11 66718719 66718919 -55124937 + MLT1J2 LTR MaLR 3 210 -234 3 1094 1145 83 0 0 chr11 66720066 66720211 -55123645 - B1_Mus1 SINE Alu 0 148 4 3 1094 26 0 0 0 chr11 66720916 66720942 -55122914 + AT_rich Low_complexity Low_complexity 1 26 0 3 1094 423 0 0 0 chr11 66721636 66721683 -55122173 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1094 233 98 24 0 chr11 66721911 66721952 -55121904 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 1094 2521 20 3 23 chr11 66721990 66722297 -55121559 + L1Md_F2 LINE L1 6281 6581 -1 3 1094 3649 146 14 9 chr11 66722612 66722704 -55121152 - RLTR20A2 LTR ERVK 0 578 488 3 1094 366 23 0 0 chr11 66722704 66722747 -55121109 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1094 3649 146 14 9 chr11 66722747 66723229 -55120627 - RLTR20A2 LTR ERVK -91 487 2 3 1094 389 223 70 125 chr11 66723761 66723889 -55119967 + RSINE1 SINE B4 2 122 -43 3 1094 294 29 0 0 chr11 66723907 66723942 -55119914 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1094 21 0 0 0 chr11 66724115 66724136 -55119720 + AT_rich Low_complexity Low_complexity 1 21 0 3 1094 278 354 30 59 chr11 66724660 66724795 -55119061 - LTR89 LTR ERVL? -17 862 732 3 1094 307 200 0 96 chr11 66727329 66727412 -55116444 + MIRc SINE MIR 111 185 -91 3 1094 207 290 138 27 chr11 66727691 66727880 -55115976 + MIRm SINE MIR 28 236 -26 3 1094 454 270 45 31 chr11 66728738 66728964 -55114892 - L1ME2 LINE L1 -136 6037 5796 3 1094 507 261 54 18 chr11 66729390 66729558 -55114298 - RLTR41 LTR ERV1 0 446 273 4 1094 573 214 0 35 chr11 66729854 66729970 -55113886 + B1_Mur1 SINE Alu 38 149 0 4 1094 266 237 13 0 chr11 66729970 66730046 -55113810 + GA-rich Low_complexity Low_complexity 4 80 0 4 1094 1403 23 17 0 chr11 66730088 66730261 -55113595 + (GGGAGA)n Simple_repeat Simple_repeat 2 177 0 4 1094 524 340 6 0 chr11 66730263 66730422 -55113434 + RSINE1 SINE B4 6 165 0 4 1094 231 295 106 71 chr11 66730434 66730547 -55113309 - LTR84a LTR ERVL -636 121 5 4 1094 351 268 105 72 chr11 66730865 66731046 -55112810 + MER53 DNA hAT 1 187 -6 4 1094 184 319 150 8 chr11 66731181 66731301 -55112555 + L2 LINE L2 2665 2801 -618 4 1094 349 355 77 6 chr11 66731421 66731591 -55112265 - MER58B DNA MER1_type -35 306 125 4 1094 749 242 84 25 chr11 66731642 66731787 -55112069 + B3 SINE B2 1 154 -62 4 1094 501 17 0 0 chr11 66731787 66731845 -55112011 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1094 749 242 84 25 chr11 66731845 66731902 -55111954 + B3 SINE B2 155 215 -1 4 1094 380 301 18 9 chr11 66731943 66732057 -55111799 + PB1D10 SINE Alu 1 115 -2 4 1094 322 239 0 0 chr11 66732100 66732170 -55111686 + ID4 SINE ID 5 74 -9 4 1094 497 286 15 15 chr11 66732276 66732411 -55111445 + ID_B1 SINE B4 87 221 -3 4 1094 325 235 23 12 chr11 66732421 66732507 -55111349 + L1MA6 LINE L1 6130 6216 -84 4 1094 520 267 7 36 chr11 66732507 66732647 -55111209 - MER2 DNA MER2_type -10 335 200 4 1094 254 341 130 22 chr11 66732836 66732974 -55110882 - MER2 DNA MER2_type -189 156 4 4 1094 596 236 34 27 chr11 66732989 66733137 -55110719 + B1_Mur1 SINE Alu 1 149 0 4 1094 319 53 53 0 chr11 66733144 66733201 -55110655 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 4 1094 233 127 55 0 chr11 66733886 66733941 -55109915 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 4 1094 342 0 0 0 chr11 66734210 66734248 -55109608 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1094 218 289 0 0 chr11 66734651 66734703 -55109153 - MIR3 SINE MIR -39 169 118 4 1094 315 303 49 55 chr11 66734796 66734960 -55108896 - MIRb SINE MIR -84 184 22 4 1094 260 204 44 22 chr11 66735314 66735404 -55108452 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 4 1094 257 292 40 22 chr11 66738232 66738370 -55105486 + MIR SINE MIR 83 236 -32 4 1094 477 330 86 11 chr11 66738392 66738579 -55105277 - MIR SINE MIR -3 259 59 4 1094 230 260 0 0 chr11 66738686 66738736 -55105120 - MurSatRep1 Unknown Unknown -1860 277 228 4 1094 1183 276 40 4 chr11 66738873 66739149 -55104707 - B4A SINE B4 0 292 7 4 1094 225 0 0 0 chr11 66741563 66741588 -55102268 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1094 537 92 0 0 chr11 66741588 66741664 -55102192 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1094 585 0 0 0 chr11 66744034 66744099 -55099757 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1094 965 198 15 25 chr11 66744099 66744268 -55099588 + B3 SINE B2 17 181 -35 4 1094 1172 44 0 0 chr11 66744268 66744404 -55099452 + B1_Mm SINE Alu 1 136 -11 4 1094 255 31 0 0 chr11 66744404 66744436 -55099420 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1094 965 198 15 25 chr11 66744436 66744467 -55099389 + B3 SINE B2 182 214 -2 4 1094 456 304 149 32 chr11 66744605 66744853 -55099003 - MLT1D LTR MaLR -62 443 167 4 1094 891 306 34 16 chr11 66744931 66745253 -55098603 - MLT1B LTR MaLR 0 390 63 4 1094 391 267 10 19 chr11 66745318 66745421 -55098435 - MLT1B LTR MaLR -403 102 1 4 1094 625 296 5 32 chr11 66745435 66745620 -55098236 + B3A SINE B2 1 180 -18 4 1094 3259 51 2 5 chr11 66745871 66746268 -55097588 + MTB LTR MaLR 1 396 -4 4 1094 261 364 30 15 chr11 66746442 66746576 -55097280 + MLT1L LTR MaLR 343 478 -132 4 1094 571 295 154 8 chr11 66746708 66746974 -55096882 + MER2 DNA MER2_type 33 337 -8 4 1094 223 195 0 0 chr11 66747032 66747073 -55096783 + T-rich Low_complexity Low_complexity 1 41 0 4 1094 378 0 0 0 chr11 66747328 66747370 -55096486 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1094 228 67 0 0 chr11 66747371 66747401 -55096455 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 4 1094 990 260 21 42 chr11 66747472 66747761 -55096095 - Lx9 LINE L1 -273 7371 7089 4 1094 374 182 13 0 chr11 66747761 66747838 -55096018 + Lx9 LINE L1 7402 7479 -165 4 1094 21 0 0 0 chr11 66748166 66748187 -55095669 + AT_rich Low_complexity Low_complexity 1 21 0 4 1094 239 300 160 0 chr11 66749028 66749128 -55094728 - PB1D10 SINE Alu 0 117 2 4 1094 2127 179 11 3 chr11 66749363 66749738 -55094118 + ORR1C1 LTR MaLR 1 378 0 4 1094 2373 96 70 123 chr11 66750063 66750517 -55093339 - RLTR23 LTR ERV1 0 430 1 4 1094 504 338 92 43 chr11 66750611 66750957 -55092899 + MLT1A0 LTR MaLR 3 365 0 4 1094 405 123 0 0 chr11 66751467 66751473 -55092383 + (GA)n Simple_repeat Simple_repeat 1 6 0 4 1094 252 0 0 0 chr11 66751473 66751501 -55092355 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1094 405 123 0 0 chr11 66751501 66751575 -55092281 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1094 182 290 113 57 chr11 66751759 66751865 -55091991 - L2a LINE L2 -2 3424 3313 4 1094 339 339 99 39 chr11 66751888 66752121 -55091735 + ORR1E LTR MaLR 8 254 -105 4 1094 2248 108 12 0 chr11 66752237 66752562 -55091294 - ORR1A4 LTR MaLR 0 329 1 4 1094 653 228 24 94 chr11 66752717 66752930 -55090926 + B3A SINE B2 1 198 0 4 1094 2828 160 26 32 chr11 66753046 66753575 -55090281 - RMER5 LTR ERV1 -8 526 1 4 1094 246 297 0 0 chr11 66753577 66753651 -55090205 + L1MB1 LINE L1 6056 6129 -60 4 1094 578 51 13 0 chr11 66753774 66753852 -55090004 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1094 549 68 0 0 chr11 66753852 66753925 -55089931 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1094 775 253 71 34 chr11 66753971 66754237 -55089619 - B4A SINE B4 -16 276 1 4 1094 2998 68 0 0 chr11 66754364 66754763 -55089093 + L1_Mm LINE L1 1799 2197 -3686 4 1094 409 147 41 21 chr11 66754935 66755032 -55088824 - Lx9 LINE L1 -27 7617 7519 4 1094 183 42 0 0 chr11 66755032 66755056 -55088800 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1094 302 306 227 60 chr11 66755301 66755583 -55088273 + MER47B DNA MER2_type 75 403 -15 4 1094 1074 297 87 16 chr11 66756488 66756985 -55086871 + L1MB3 LINE L1 5618 6149 -34 4 1094 608 127 9 0 chr11 66756987 66757097 -55086759 + (TG)n Simple_repeat Simple_repeat 2 112 0 4 1094 297 0 0 0 chr11 66757189 66757222 -55086634 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 4 1094 290 365 71 45 chr11 66757941 66758096 -55085760 + MER58A DNA MER1_type 52 210 -14 4 1094 270 136 0 0 chr11 66758096 66758140 -55085716 + (A)n Simple_repeat Simple_repeat 1 44 0 4 1094 201 184 26 0 chr11 66758618 66758670 -55085186 + GA-rich Low_complexity Low_complexity 1 53 0 4 1094 336 298 149 0 chr11 66758755 66758876 -55084980 - MIR SINE MIR -56 206 68 4 1094 27 0 0 0 chr11 66759493 66759520 -55084336 + AT_rich Low_complexity Low_complexity 1 27 0 4 1094 312 287 69 0 chr11 66759550 66759651 -55084205 - PB1D10 SINE Alu -7 110 3 4 1094 607 287 88 65 chr11 66759981 66760363 -55083493 + MLT1B LTR MaLR 2 450 -17 4 1094 189 107 0 0 chr11 66760993 66761021 -55082835 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1094 1106 51 22 0 chr11 66761131 66761269 -55082587 - B1_Mm SINE Alu -6 141 1 4 1094 2926 33 0 3 chr11 66761345 66761683 -55082173 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1094 12108 21 1 4 chr11 66761683 66763036 -55080820 - IAPEz-int LTR ERVK 0 6481 5132 4 1094 37364 24 40 28 chr11 66763035 66765204 -55078652 - IAPEz-int LTR ERVK -1936 4545 2310 4 1094 183 265 105 35 chr11 66765204 66765290 -55078566 - L3 LINE CR1 -3669 820 729 4 1094 37364 24 40 28 chr11 66765290 66767520 -55076336 - IAPEz-int LTR ERVK -1936 2309 8 4 1094 2926 33 0 3 chr11 66767520 66767858 -55075998 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1094 483 270 0 0 chr11 66767862 66767971 -55075885 + MER2 DNA MER2_type 106 214 -131 4 1094 1517 134 9 0 chr11 66767971 66768194 -55075662 + URR1B DNA MER1_type 1 225 0 4 1094 394 275 117 0 chr11 66768194 66768312 -55075544 + MER2 DNA MER2_type 212 343 -2 4 1094 273 297 16 0 chr11 66768451 66768515 -55075341 - MER81 DNA AcHobo -5 109 45 4 1094 378 0 0 0 chr11 66768529 66768571 -55075285 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1094 206 273 55 0 chr11 66769011 66769066 -55074790 - MIRb SINE MIR -96 172 115 4 1094 441 0 0 0 chr11 66770727 66770776 -55073080 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1094 180 97 0 0 chr11 66771622 66771653 -55072203 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 4 1094 1293 27 0 0 chr11 66771653 66771800 -55072056 - B1_Mm SINE Alu 0 147 1 4 1094 333 0 0 0 chr11 66771920 66771957 -55071899 + (TTG)n Simple_repeat Simple_repeat 2 38 0 4 1094 881 160 35 0 chr11 66772544 66772688 -55071168 - B1_Mur4 SINE Alu -1 149 1 4 1094 339 203 0 86 chr11 66772858 66772928 -55070928 + RSINE1 SINE B4 45 108 -57 4 1094 387 0 0 0 chr11 66772953 66772996 -55070860 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1094 969 93 95 39 chr11 66773051 66773230 -55070626 + B2_Mm2 SINE B2 1 189 -6 4 1094 641 132 27 36 chr11 66773265 66773375 -55070481 + B1_Mus2 SINE Alu 35 143 -4 4 1094 296 302 84 0 chr11 66773412 66773537 -55070319 + MIR SINE MIR 39 181 -87 4 1094 268 225 42 0 chr11 66773664 66773735 -55070121 - ID4 SINE ID -6 77 4 4 1094 22 0 0 0 chr11 66774762 66774784 -55069072 + AT_rich Low_complexity Low_complexity 1 22 0 4 1094 342 0 0 0 chr11 66774877 66774915 -55068941 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1094 222 208 0 0 chr11 66776494 66776542 -55067314 + CT-rich Low_complexity Low_complexity 2 49 0 4 1094 560 312 48 29 chr11 66776660 66776868 -55066988 + MER58A DNA MER1_type 3 214 -10 4 1094 205 291 45 62 chr11 66777507 66777648 -55066208 - MIRb SINE MIR -116 152 3 4 1094 3341 67 11 26 chr11 66778827 66779290 -55064566 + L1_Mus4 LINE L1 6179 6634 -2 5 1094 423 0 0 0 chr11 66779448 66779495 -55064361 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1094 1007 110 0 20 chr11 66779542 66779691 -55064165 + B1_Mus1 SINE Alu 2 147 -1 5 1094 473 350 45 41 chr11 66779880 66779951 -55063905 + MamRep137 DNA TcMar? 86 158 -286 5 1094 288 77 0 0 chr11 66779951 66779990 -55063866 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 1094 473 350 45 41 chr11 66779990 66780210 -55063646 + MamRep137 DNA TcMar? 159 378 -66 5 1094 206 298 18 0 chr11 66780242 66780299 -55063557 - MIRc SINE MIR -189 79 22 5 1094 391 175 104 11 chr11 66782348 66782415 -55061441 + B1_Mm SINE Alu 2 76 -71 5 1094 370 222 0 12 chr11 66782415 66782497 -55061359 + MER5A DNA MER1_type 2 82 -107 5 1094 331 311 57 19 chr11 66782500 66782605 -55061251 + MER81 DNA AcHobo 3 111 -3 5 1094 261 281 18 0 chr11 66783540 66783597 -55060259 + MER5A DNA MER1_type 55 112 -77 5 1094 367 254 0 35 chr11 66783976 66784090 -55059766 - Charlie19a DNA Charlie -47 339 230 5 1094 409 248 0 73 chr11 66784830 66784939 -55058917 - PB1D10 SINE Alu -5 112 12 5 1094 235 281 21 43 chr11 66785086 66785179 -55058677 - Lx8 LINE L1 -6 7467 7377 5 1094 207 0 0 0 chr11 66786749 66786772 -55057084 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1094 486 0 0 0 chr11 66786772 66786825 -55057031 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1094 233 318 267 0 chr11 66787021 66787197 -55056659 - MIR SINE MIR 0 262 40 5 1094 205 321 18 18 chr11 66787343 66787400 -55056456 + MER5A DNA MER1_type 129 185 -4 5 1094 354 326 142 11 chr11 66787479 66787662 -55056194 + L1M5 LINE L1 3159 3365 -2781 5 1094 831 197 33 42 chr11 66787725 66787937 -55055919 - B3 SINE B2 -6 210 1 5 1094 234 229 0 20 chr11 66787967 66788016 -55055840 + B3A SINE B2 1 48 -150 5 1094 1278 169 14 0 chr11 66788834 66789047 -55054809 + B3 SINE B2 1 216 0 5 1094 243 0 0 0 chr11 66789348 66789375 -55054481 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1094 180 0 0 0 chr11 66789375 66789394 -55054462 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1094 543 237 38 29 chr11 66789452 66789622 -55054234 + L1MD2 LINE L1 2164 2337 -3809 5 1094 375 316 65 7 chr11 66789875 66790028 -55053828 + RSINE1 SINE B4 4 165 0 5 1094 293 251 3 11 chr11 66790233 66790311 -55053545 - ID4 SINE ID -8 75 1 5 1094 336 337 0 10 chr11 66790328 66790427 -55053429 - PB1D10 SINE Alu -8 109 12 5 1094 319 319 26 11 chr11 66790634 66790744 -55053112 + PB1D10 SINE Alu 7 127 0 5 1094 286 247 32 11 chr11 66790746 66790840 -55053016 + L1MD2 LINE L1 2365 2460 -3686 5 1094 646 280 32 21 chr11 66790842 66791028 -55052828 + B3A SINE B2 3 190 -8 5 1094 405 0 0 0 chr11 66791046 66791091 -55052765 + (TAA)n Simple_repeat Simple_repeat 2 46 0 5 1094 707 323 107 24 chr11 66791133 66791666 -55052190 + L1MD2 LINE L1 5320 5896 -463 5 1094 28 0 0 0 chr11 66791907 66791935 -55051921 + AT_rich Low_complexity Low_complexity 1 28 0 5 1094 312 207 287 0 chr11 66792441 66792528 -55051328 - PB1D10 SINE Alu -5 112 1 5 1094 394 301 185 18 chr11 66792880 66793107 -55050749 + MARNA DNA Mariner 309 573 -13 5 1094 282 193 0 0 chr11 66793824 66793881 -55049975 + GA-rich Low_complexity Low_complexity 3 59 0 5 1094 272 27 27 0 chr11 66793882 66793919 -55049937 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 5 1094 207 0 0 0 chr11 66794688 66794711 -55049145 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1094 1754 164 83 30 chr11 66795010 66795406 -55048450 + RLTR31A_Mm LTR ERVK 3 419 -165 5 1094 229 231 0 55 chr11 66795461 66795516 -55048340 + RLTR17 LTR ERVK 641 692 0 5 1094 884 234 133 64 chr11 66795677 66796013 -55047843 - MTD LTR MaLR -14 405 35 5 1094 1435 164 0 0 chr11 66796013 66796238 -55047618 - URR1B DNA MER1_type 0 225 1 5 1094 884 234 133 64 chr11 66796238 66796276 -55047580 - MTD LTR MaLR -385 34 5 5 1094 443 326 131 46 chr11 66796346 66796757 -55047099 - MLT1H LTR MaLR -7 542 97 5 1094 201 283 0 0 chr11 66796943 66796996 -55046860 - L2c LINE L2 -305 3082 3030 5 1094 346 309 123 55 chr11 66798692 66798911 -55044945 - MIRc SINE MIR -5 263 30 5 1094 264 355 36 7 chr11 66798986 66799125 -55044731 - MER5B DNA MER1_type -31 147 5 5 1094 4044 72 19 8 chr11 66799210 66799741 -55044115 + L1_Mus3 LINE L1 6099 6635 -3 5 1094 306 0 0 0 chr11 66799842 66799876 -55043980 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1094 356 207 221 18 chr11 66800348 66800461 -55043395 - L2a LINE L2 -2 3424 3289 5 1094 378 0 0 0 chr11 66800491 66800533 -55043323 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1094 259 279 144 23 chr11 66800588 66800720 -55043136 - L2a LINE L2 -281 3145 2998 5 1094 423 282 159 54 chr11 66800899 66801192 -55042664 - MLT1G1 LTR MaLR -39 540 198 5 1094 192 40 0 0 chr11 66802191 66802216 -55041640 + (TTG)n Simple_repeat Simple_repeat 2 26 0 5 1094 253 325 23 46 chr11 66802217 66802304 -55041552 - MER20 DNA MER1_type -55 164 80 5 1094 357 24 0 0 chr11 66802358 66802400 -55041456 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1094 385 343 64 56 chr11 66803309 66803385 -55040471 + L1M5 LINE L1 5259 5330 -794 5 1094 1407 89 16 5 chr11 66803385 66803577 -55040279 + B2_Mm2 SINE B2 1 194 -1 5 1094 385 343 64 56 chr11 66803577 66803766 -55040090 + L1M5 LINE L1 5331 5526 -598 5 1094 716 277 6 0 chr11 66803842 66804001 -55039855 + ID_B1 SINE B4 64 223 -1 5 1094 246 351 37 37 chr11 66804092 66804228 -55039628 + MIRb SINE MIR 77 212 -56 5 1094 232 261 96 115 chr11 66804689 66804793 -55039063 + LTR89 LTR ERVL? 497 598 -281 5 1094 234 0 0 0 chr11 66804846 66804872 -55038984 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1094 311 252 51 36 chr11 66804872 66804978 -55038878 - PB1D10 SINE Alu -10 107 1 5 1094 526 266 0 17 chr11 66804983 66805098 -55038758 - PB1D10 SINE Alu -3 114 2 5 1094 381 296 152 27 chr11 66805507 66805691 -55038165 + MIR SINE MIR 14 220 -42 5 1094 335 335 83 10 chr11 66805729 66805922 -55037934 + LTR33 LTR ERVL 15 221 -294 5 1094 3043 56 23 3 chr11 66806613 66807005 -55036851 - MTB LTR MaLR 0 400 1 5 1094 275 315 53 38 chr11 66807331 66807463 -55036393 - MLT1N2 LTR MaLR -338 224 91 5 1094 507 250 0 0 chr11 66807506 66807598 -55036258 + RSINE1 SINE B4 2 93 -72 5 1094 378 0 0 0 chr11 66807599 66807641 -55036215 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1094 252 0 0 0 chr11 66807641 66807668 -55036188 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1094 407 271 62 0 chr11 66807670 66807799 -55036057 + L1MA4 LINE L1 5802 5938 -362 5 1094 189 0 0 0 chr11 66807804 66807825 -55036031 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1094 414 0 0 0 chr11 66807825 66807870 -55035986 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1094 640 209 41 54 chr11 66808105 66808252 -55035604 + B1_Mus1 SINE Alu 3 147 -1 5 1094 1155 81 0 0 chr11 66808279 66808439 -55035417 + (GGA)n Simple_repeat Simple_repeat 1 160 0 5 1094 2660 152 70 37 chr11 66808737 66809732 -55034124 - RMER12 LTR ERVK -95 1227 1 5 1094 277 250 137 14 chr11 66810286 66810359 -55033497 + Charlie9 DNA MER1_type 1 82 -2675 5 1094 270 0 0 0 chr11 66810855 66810885 -55032971 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1094 391 299 52 39 chr11 66812368 66812521 -55031335 - MER58A DNA MER1_type -12 212 58 5 1094 502 233 60 113 chr11 66812616 66812766 -55031090 + MER20 DNA MER1_type 1 142 -77 5 1094 1826 193 54 33 chr11 66813025 66813417 -55030439 - RMER10A LTR ERVL -42 400 1 5 1094 230 219 57 80 chr11 66813433 66813540 -55030316 - MIRb SINE MIR -58 150 47 5 1094 476 221 103 97 chr11 66814975 66815130 -55028726 + B3A SINE B2 43 198 0 5 1094 384 304 106 63 chr11 66815934 66816141 -55027715 + MER20 DNA MER1_type 1 216 -3 5 1094 194 133 0 0 chr11 66816306 66816336 -55027520 - L2c LINE L2 -16 3371 3342 5 1094 396 0 0 0 chr11 66817073 66817117 -55026739 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1094 559 345 41 61 chr11 66817151 66817355 -55026501 - B4A SINE B4 -4 288 79 5 1094 2713 135 17 5 chr11 66817355 66817597 -55026259 + MTC LTR MaLR 1 240 -181 5 1094 414 0 0 0 chr11 66817597 66817643 -55026213 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1094 2713 135 17 5 chr11 66817643 66817816 -55026040 + MTC LTR MaLR 241 419 -2 5 1094 559 345 41 61 chr11 66817816 66817904 -55025952 - B4A SINE B4 -214 78 2 5 1094 195 42 0 0 chr11 66818214 66818238 -55025618 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1094 387 0 0 0 chr11 66818238 66818280 -55025576 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1094 246 169 17 0 chr11 66818670 66818729 -55025127 + (CATGT)n Simple_repeat Simple_repeat 5 64 0 5 1094 1264 102 32 5 chr11 66819898 66820086 -55023770 + B2_Mm2 SINE B2 1 193 -2 5 1094 3924 21 5 0 chr11 66820233 66820667 -55023189 - RLTR10C LTR ERVK 0 436 1 5 1094 310 275 40 44 chr11 66820747 66820880 -55022976 + L2b LINE L2 3211 3338 -49 5 1094 774 165 15 8 chr11 66820916 66821050 -55022806 + MTC LTR MaLR 1 135 -284 5 1094 1358 230 20 23 chr11 66821069 66821372 -55022484 + MTC LTR MaLR 120 421 0 5 1094 360 0 0 0 chr11 66821997 66822037 -55021819 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1094 507 149 0 0 chr11 66822642 66822763 -55021093 + (TC)n Simple_repeat Simple_repeat 1 121 0 5 1094 189 0 0 0 chr11 66822759 66822780 -55021076 + (CATCT)n Simple_repeat Simple_repeat 3 23 0 5 1094 531 0 0 0 chr11 66823109 66823168 -55020688 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 5 1094 189 61 38 75 chr11 66823295 66823348 -55020508 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 1094 379 369 0 15 chr11 66823351 66823483 -55020373 + C-rich Low_complexity Low_complexity 1 130 0 5 1094 369 283 64 70 chr11 66823484 66823640 -55020216 - HAL1-3A_ME LINE L1 -420 2438 2284 5 1094 270 304 7 42 chr11 66823640 66823784 -55020072 + CT-rich Low_complexity Low_complexity 5 143 0 5 1094 201 94 0 0 chr11 66824888 66824920 -55018936 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1094 623 238 15 16 chr11 66824948 66825102 -55018754 + B1_Mur1 SINE Alu 2 149 0 6 1094 581 251 111 33 chr11 66825197 66825378 -55018478 + RLTR9A LTR ERVK 1 195 -173 6 1094 267 279 117 58 chr11 66825514 66825651 -55018205 - B1_Mur2 SINE Alu -4 145 1 6 1094 195 42 0 0 chr11 66825723 66825747 -55018109 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1094 642 254 7 14 chr11 66825755 66825899 -55017957 - RSINE1 SINE B4 -21 144 2 6 1094 347 307 109 45 chr11 66825967 66826233 -55017623 - L2 LINE L2 -659 2760 2478 6 1094 255 360 11 11 chr11 66826454 66826544 -55017312 - MER2B DNA MER2_type -4 332 243 6 1094 22 35 0 0 chr11 66826546 66826575 -55017281 + AT_rich Low_complexity Low_complexity 1 29 0 6 1094 495 278 164 6 chr11 66826586 66826763 -55017093 + B4A SINE B4 3 207 -85 6 1094 315 291 147 67 chr11 66826868 66827022 -55016834 - MER2B DNA MER2_type -85 251 81 6 1094 1075 44 0 28 chr11 66827022 66827163 -55016693 - B1_Mus2 SINE Alu -9 138 2 6 1094 315 291 147 67 chr11 66827163 66827233 -55016623 - MER2B DNA MER2_type -256 80 9 6 1094 880 266 121 38 chr11 66828882 66828999 -55014857 + MER44A DNA MER2_type 1 138 -201 6 1094 1658 146 190 17 chr11 66828999 66829102 -55014754 + RMER17C LTR ERVK 1 103 -307 6 1094 486 0 0 0 chr11 66829102 66829156 -55014700 + (TTCTC)n Simple_repeat Simple_repeat 1 54 0 6 1094 1658 146 190 17 chr11 66829156 66829400 -55014456 + RMER17C LTR ERVK 104 408 -2 6 1094 880 266 121 38 chr11 66829400 66829595 -55014261 + MER44A DNA MER2_type 139 339 0 6 1094 328 266 8 131 chr11 66829615 66829745 -55014111 + PB1D10 SINE Alu 4 117 0 6 1094 559 319 124 15 chr11 66829898 66830372 -55013484 - L1ME2z LINE L1 0 6444 5919 6 1094 373 303 19 13 chr11 66830563 66830720 -55013136 + RSINE1 SINE B4 2 159 -6 6 1094 660 258 31 6 chr11 66830790 66830950 -55012906 + RSINE1 SINE B4 2 165 0 6 1094 298 300 34 60 chr11 66831308 66831425 -55012431 - L2b LINE L2 -24 3351 3238 6 1094 218 296 0 12 chr11 66831841 66831923 -55011933 + GA-rich Low_complexity Low_complexity 3 83 0 6 1094 341 266 173 124 chr11 66832043 66832221 -55011635 - MLT1B LTR MaLR -42 348 155 6 1094 2319 103 32 35 chr11 66832221 66832594 -55011262 + Lx LINE L1 6281 6652 -2 6 1094 341 266 173 124 chr11 66832594 66832681 -55011175 - MLT1B LTR MaLR -236 154 70 6 1094 275 288 37 24 chr11 66832896 66832978 -55010878 + MLT1C LTR MaLR 9 91 -414 6 1094 1438 67 6 0 chr11 66832996 66833174 -55010682 + B2_Mm1a SINE B2 1 179 -14 6 1094 744 12 0 0 chr11 66833176 66833261 -55010595 + (GAAA)n Simple_repeat Simple_repeat 2 86 0 6 1094 620 286 0 15 chr11 66833320 66833455 -55010401 + RSINE1 SINE B4 2 134 -31 6 1094 383 0 21 0 chr11 66833474 66833521 -55010335 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1094 297 295 122 26 chr11 66833979 66834094 -55009762 + MLT1C LTR MaLR 286 411 -56 6 1094 228 229 84 14 chr11 66835174 66835245 -55008611 + Kanga1 DNA Tc2 1173 1248 -497 6 1094 566 245 50 0 chr11 66835767 66835926 -55007930 - MLT1B LTR MaLR -113 277 111 6 1094 884 134 83 0 chr11 66835945 66836102 -55007754 + B2_Mm2 SINE B2 4 173 -22 6 1094 215 103 0 25 chr11 66836112 66836152 -55007704 + (TTA)n Simple_repeat Simple_repeat 3 41 0 6 1094 243 125 0 0 chr11 66836154 66836194 -55007662 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1094 261 125 0 0 chr11 66836316 66836356 -55007500 - MLT1B LTR MaLR -265 125 86 6 1094 1306 88 50 0 chr11 66836595 66836777 -55007079 - B2_Mm2 SINE B2 -1 194 4 6 1094 189 0 0 0 chr11 66836778 66836799 -55007057 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 6 1094 1393 132 22 35 chr11 66836895 66836954 -55006902 - URR1B DNA MER1_type 0 225 170 6 1094 1781 171 41 44 chr11 66836954 66837365 -55006491 + RMER17C LTR ERVK 1 410 0 6 1094 1393 132 22 35 chr11 66837365 66837533 -55006323 - URR1B DNA MER1_type -56 169 1 6 1094 327 220 104 66 chr11 66837993 66838122 -55005734 + B1_Mur4 SINE Alu 26 150 0 6 1094 286 33 0 77 chr11 66838201 66838266 -55005590 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1094 967 16 186 0 chr11 66838268 66838392 -55005464 - B1_Mus2 SINE Alu 0 147 1 6 1094 208 280 9 53 chr11 66838555 66838668 -55005188 + (CCCCG)n Simple_repeat Simple_repeat 5 112 0 6 1094 567 0 0 0 chr11 66841057 66841120 -55002736 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 6 1094 459 262 82 14 chr11 66841621 66841768 -55002088 + RSINE1 SINE B4 3 159 -6 6 1094 971 114 7 0 chr11 66841904 66842044 -55001812 - B1_Mus1 SINE Alu 0 148 8 6 1094 383 257 79 79 chr11 66841910 66842062 -55001794 - B4A SINE B4 -72 220 69 6 1094 210 316 38 12 chr11 66842423 66842503 -55001353 + MER5A DNA MER1_type 13 94 -95 6 1094 306 0 0 0 chr11 66842812 66842846 -55001010 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1094 897 36 9 0 chr11 66843782 66843892 -54999964 + B2_Mm2 SINE B2 2 112 -83 6 1094 31 68 0 0 chr11 66844053 66844112 -54999744 + AT_rich Low_complexity Low_complexity 1 59 0 6 1094 1285 176 0 5 chr11 66845777 66845988 -54997868 + B3 SINE B2 1 210 -6 6 1094 272 265 25 25 chr11 66846004 66846124 -54997732 - L1M4 LINE L1 -3292 2854 2735 6 1094 339 236 14 0 chr11 66846134 66846206 -54997650 + B3 SINE B2 144 216 0 6 1094 261 0 0 0 chr11 66846256 66846285 -54997571 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1094 279 141 0 0 chr11 66846285 66846349 -54997507 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1094 402 246 0 0 chr11 66846348 66846515 -54997341 + (CA)n Simple_repeat Simple_repeat 2 168 0 6 136 504 320 62 65 chr11 66846536 66846874 -54996982 + L1MC LINE L1 3084 3420 -2726 6 1095 243 276 13 13 chr11 66846965 66847042 -54996814 - ID4 SINE ID -2 81 5 6 1095 324 253 33 0 chr11 66847053 66847144 -54996712 - ID_B1 SINE B4 -4 220 127 6 1095 577 281 7 0 chr11 66847182 66847321 -54996535 + B1F1 SINE Alu 5 144 -5 6 1095 240 319 113 17 chr11 66847912 66848027 -54995829 + MIRc SINE MIR 23 148 -120 6 1095 276 239 42 0 chr11 66848448 66848519 -54995337 + Charlie5 DNA MER1_type 31 104 -2520 6 1095 672 13 0 0 chr11 66848565 66848642 -54995214 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1095 636 262 69 42 chr11 66848674 66848963 -54994893 + RLTR11B LTR ERVK 1 283 -162 6 1095 494 271 65 49 chr11 66848950 66849229 -54994627 + RLTR11B LTR ERVK 200 521 -7 6 1095 368 238 221 56 chr11 66849231 66849435 -54994421 + Charlie5 DNA MER1_type 2333 2545 -79 6 1095 1594 47 5 0 chr11 66849435 66849627 -54994229 - B2_Mm1a SINE B2 0 193 1 6 1095 368 233 224 56 chr11 66849627 66849682 -54994174 + Charlie5 DNA MER1_type 2546 2603 -21 6 1095 995 257 128 12 chr11 66849741 66849978 -54993878 + ORR1D2 LTR MaLR 2 271 -99 6 1095 1165 119 118 5 chr11 66849978 66850181 -54993675 + URR1A DNA MER1_type 1 226 0 6 1095 995 257 128 12 chr11 66850181 66850270 -54993586 + ORR1D2 LTR MaLR 272 365 -5 6 1095 733 99 0 16 chr11 66851218 66851341 -54992515 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 6 1095 229 350 19 48 chr11 66852033 66852138 -54991718 + ID_B1 SINE B4 75 176 -48 6 1095 290 267 93 56 chr11 66852047 66852154 -54991702 + B1F1 SINE Alu 11 121 -28 6 1095 1003 186 35 25 chr11 66853369 66853567 -54990289 + B3 SINE B2 1 200 -16 6 1095 383 335 68 81 chr11 66854344 66854714 -54989142 + ORR1D2 LTR MaLR 6 370 0 6 1095 603 262 98 67 chr11 66855899 66856343 -54987513 + RLTR11B LTR ERVK 3 467 -60 6 1095 923 248 76 84 chr11 66856548 66856811 -54987045 + ORR1D2 LTR MaLR 4 262 -108 6 1095 682 184 104 0 chr11 66856811 66856936 -54986920 - B1_Mur2 SINE Alu -9 140 3 6 1095 923 248 76 84 chr11 66856936 66857042 -54986814 + ORR1D2 LTR MaLR 263 370 0 6 1095 371 294 69 43 chr11 66857081 66857269 -54986587 + B3A SINE B2 2 194 -4 6 1095 260 108 45 30 chr11 66857549 66857616 -54986240 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 6 1095 587 295 0 7 chr11 66857880 66858020 -54985836 + RSINE1 SINE B4 13 151 -14 6 1095 540 0 0 0 chr11 66858450 66858510 -54985346 + (TTCTC)n Simple_repeat Simple_repeat 3 62 0 6 1095 315 299 105 33 chr11 66859360 66859512 -54984344 - ORR1D2 LTR MaLR -130 240 78 6 1095 1118 75 0 26 chr11 66859899 66860050 -54983806 + B1_Mus1 SINE Alu 1 147 -1 6 1095 180 0 0 0 chr11 66860070 66860090 -54983766 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 6 1095 899 48 186 0 chr11 66860341 66860465 -54983391 + B1_Mm SINE Alu 1 147 0 6 1095 357 24 0 0 chr11 66860465 66860507 -54983349 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1095 333 0 0 0 chr11 66860794 66860831 -54983025 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1095 2608 108 26 119 chr11 66861252 66861747 -54982109 + RMER6B LTR ERVK 1 449 -12 6 1095 232 27 54 0 chr11 66861747 66861784 -54982072 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 6 1095 252 86 0 0 chr11 66862647 66862682 -54981174 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1095 890 43 26 0 chr11 66862682 66862798 -54981058 - B1_Mm SINE Alu 0 147 29 6 1095 762 261 11 0 chr11 66862845 66863029 -54980827 + B3A SINE B2 2 187 -11 6 1095 741 251 57 57 chr11 66863070 66863264 -54980592 + B3A SINE B2 5 198 0 6 1095 3513 115 205 23 chr11 66863708 66864348 -54979508 - RMER6A LTR ERVK 0 756 1 6 1095 673 246 59 41 chr11 66866831 66867051 -54976805 - ID_B1 SINE B4 0 224 1 6 1095 275 294 84 52 chr11 66867412 66867566 -54976290 - RSINE1 SINE B4 -6 159 1 6 1095 426 327 102 23 chr11 66867863 66868129 -54975727 - L1MC4 LINE L1 -378 7664 7378 6 1095 1123 264 31 55 chr11 66868324 66868724 -54975132 + MTE2a LTR MaLR 13 417 -2 6 1095 608 179 65 8 chr11 66870527 66870651 -54973205 - B1_Mur4 SINE Alu -6 144 14 6 1095 307 301 7 125 chr11 66870530 66870682 -54973174 - MT2B2 LTR ERVL -298 286 153 6 1095 569 190 190 0 chr11 66870830 66870951 -54972905 + B1_Mur2 SINE Alu 1 144 -5 6 1095 1058 271 147 17 chr11 66871098 66871560 -54972296 - Lx7 LINE L1 -330 7366 6845 6 1095 1046 224 9 0 chr11 66872033 66872243 -54971613 + B3 SINE B2 3 214 -2 6 1095 1295 196 0 4 chr11 66872828 66873054 -54970802 + URR1B DNA MER1_type 1 225 0 6 1095 378 293 71 7 chr11 66873309 66873450 -54970406 - B4A SINE B4 -114 178 29 6 1095 521 171 28 18 chr11 66873931 66874029 -54969827 + B1_Mur1 SINE Alu 1 140 -9 7 1095 690 254 183 9 chr11 66875641 66875871 -54967985 + B4A SINE B4 1 270 -22 7 1095 186 167 0 0 chr11 66878075 66878090 -54965766 + T-rich Low_complexity Low_complexity 34 48 0 7 1095 1221 48 7 0 chr11 66878090 66878237 -54965619 - B1_Mus1 SINE Alu 0 148 1 7 1095 186 167 0 0 chr11 66878237 66878269 -54965587 + T-rich Low_complexity Low_complexity 2 33 0 7 1095 766 182 35 0 chr11 66878701 66878844 -54965012 + B1_Mur1 SINE Alu 2 149 0 7 1095 440 314 89 100 chr11 66879128 66879246 -54964610 + MLT1B LTR MaLR 1 98 -292 7 1095 642 138 84 78 chr11 66879246 66879388 -54964468 - B1_Mur4 SINE Alu -7 143 1 7 1095 440 314 89 100 chr11 66879388 66879630 -54964226 + MLT1B LTR MaLR 99 357 -33 7 1095 648 129 0 11 chr11 66879651 66879745 -54964111 - B2_Mm2 SINE B2 -100 95 3 7 1095 329 321 87 31 chr11 66880434 66880595 -54963261 - L1M5 LINE L1 -690 5434 5265 7 1095 351 258 26 28 chr11 66881578 66881684 -54962172 + B4A SINE B4 174 273 -19 7 1095 343 312 0 44 chr11 66882398 66882525 -54961331 + MIRc SINE MIR 111 222 -46 7 1095 861 260 126 7 chr11 66882654 66882948 -54960908 + Lx9 LINE L1 7197 7525 -119 7 1095 36 0 0 0 chr11 66883034 66883070 -54960786 + AT_rich Low_complexity Low_complexity 1 36 0 7 1095 1265 40 0 0 chr11 66883070 66883218 -54960638 - B1_Mus1 SINE Alu 0 148 1 7 1095 841 179 0 7 chr11 66883507 66883648 -54960208 - B1_Mur2 SINE Alu -8 141 2 7 1095 356 237 23 116 chr11 66883534 66883663 -54960193 - MT2B LTR ERVL -337 264 148 7 1095 1399 69 26 16 chr11 66884427 66884619 -54959237 - B2_Mm2 SINE B2 0 195 2 7 1095 501 229 25 100 chr11 66884639 66884799 -54959057 - B1_Mur2 SINE Alu -1 148 1 7 1095 1657 194 61 17 chr11 66885227 66885573 -54958283 - ORR1D1 LTR MaLR -13 361 1 7 1095 923 178 112 56 chr11 66885852 66886066 -54957790 - URR1A DNA MER1_type 0 226 1 7 1095 743 296 39 13 chr11 66887030 66887259 -54956597 - MER44A DNA MER2_type -7 332 98 7 1095 351 218 121 0 chr11 66887275 66887368 -54956488 + PB1D10 SINE Alu 9 109 -8 7 1095 203 0 37 0 chr11 66887846 66887873 -54955983 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 7 1095 1521 63 5 0 chr11 66887875 66888066 -54955790 - B2_Mm1a SINE B2 -1 192 1 7 1095 271 179 15 15 chr11 66888176 66888244 -54955612 + GA-rich Low_complexity Low_complexity 2 69 0 7 1095 1251 41 7 0 chr11 66889032 66889177 -54954679 + B1_Mus2 SINE Alu 2 147 0 7 1095 206 0 0 65 chr11 66889177 66889208 -54954648 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 7 1095 1209 56 0 0 chr11 66890630 66890772 -54953084 + B1_Mus1 SINE Alu 2 143 -5 7 1095 181 247 92 92 chr11 66892129 66892227 -54951629 - L3 LINE CR1 -519 3970 3873 7 1095 872 178 7 0 chr11 66892830 66892976 -54950880 - B1_Mur1 SINE Alu -1 148 2 7 1095 292 292 0 0 chr11 66894238 66894303 -54949553 + ID4 SINE ID 5 69 -14 7 1095 318 204 0 0 chr11 66895314 66895427 -54948429 + GA-rich Low_complexity Low_complexity 2 114 0 7 1095 245 53 0 50 chr11 66895544 66895584 -54948272 + (TATG)n Simple_repeat Simple_repeat 2 39 0 7 1095 222 289 0 38 chr11 66896075 66896154 -54947702 + G-rich Low_complexity Low_complexity 1 76 0 7 1095 187 226 58 101 chr11 66898478 66898547 -54945309 + L3 LINE CR1 2197 2262 -2227 7 1095 704 242 156 16 chr11 66898765 66899009 -54944847 - B4A SINE B4 -10 282 5 7 1095 1322 145 51 0 chr11 66899508 66899722 -54944134 - URR1B DNA MER1_type 0 225 1 7 1095 432 0 0 0 chr11 66900334 66900382 -54943474 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1095 629 244 8 0 chr11 66900397 66900528 -54943328 - RSINE1 SINE B4 -32 133 2 7 1095 890 288 44 55 chr11 66901256 66901528 -54942328 + B4 SINE B4 1 269 -23 7 1095 214 314 27 41 chr11 66901496 66901538 -54942318 + RSINE1 SINE B4 92 134 -31 7 1095 423 0 0 0 chr11 66901538 66901585 -54942271 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1095 214 314 27 41 chr11 66901585 66901615 -54942241 + RSINE1 SINE B4 135 163 -2 7 1095 943 97 0 50 chr11 66904700 66904841 -54939015 - B1_Mus2 SINE Alu -1 146 13 7 1095 865 62 7 27 chr11 66904867 66905017 -54938839 + (TCTA)n Simple_repeat Simple_repeat 1 147 0 7 1095 841 108 0 29 chr11 66905045 66905217 -54938639 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 7 1095 652 260 40 0 chr11 66905223 66905373 -54938483 - RSINE1 SINE B4 0 165 10 7 1095 192 222 83 92 chr11 66905432 66905541 -54938315 - L2 LINE L2 -1169 2250 2143 7 1095 775 82 0 24 chr11 66906126 66906166 -54937690 + (TCC)n Simple_repeat Simple_repeat 2 40 0 7 1095 1227 72 0 16 chr11 66906166 66906349 -54937507 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1095 775 82 0 24 chr11 66906349 66906363 -54937493 + (TCC)n Simple_repeat Simple_repeat 3 16 0 7 1095 1062 112 11 6 chr11 66906363 66906542 -54937314 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1095 775 82 0 24 chr11 66906542 66906611 -54937245 + (TCC)n Simple_repeat Simple_repeat 1 68 0 7 1095 370 275 203 13 chr11 66907703 66907939 -54935917 - L1MA4 LINE L1 -306 5994 5714 7 1095 238 229 42 0 chr11 66908717 66908765 -54935091 - B1_Mur1 SINE Alu -1 148 99 7 1095 563 232 0 16 chr11 66908765 66908892 -54934964 - B1_Mur1 SINE Alu -22 127 3 7 1095 330 87 0 0 chr11 66909443 66909489 -54934367 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 7 1095 1467 85 5 0 chr11 66910988 66911177 -54932679 + B2_Mm1t SINE B2 1 190 -3 7 1095 441 0 0 0 chr11 66911712 66911761 -54932095 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 7 1095 1182 65 39 0 chr11 66911761 66911915 -54931941 - B2_Mm2 SINE B2 -34 161 2 7 1095 362 21 21 0 chr11 66915909 66915956 -54927900 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1095 276 273 0 0 chr11 66916231 66916286 -54927570 + ID4_ SINE ID 21 75 -8 7 1095 351 0 0 0 chr11 66916286 66916325 -54927531 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 7 1095 258 279 0 81 chr11 66916325 66916355 -54927501 + BC1_Mm scRNA scRNA 76 99 -53 7 1095 416 286 63 25 chr11 66917242 66917400 -54926456 + L1MC5 LINE L1 7389 7552 -409 7 1095 225 0 0 0 chr11 66917429 66917454 -54926402 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1095 745 243 21 7 chr11 66917455 66917596 -54926260 - RSINE1 SINE B4 -20 145 3 7 1095 847 142 6 6 chr11 66917859 66918036 -54925820 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1095 193 83 278 0 chr11 66918536 66918572 -54925284 - MIR SINE MIR -159 103 58 7 1095 22 35 0 0 chr11 66919100 66919129 -54924727 + AT_rich Low_complexity Low_complexity 1 29 0 7 1095 273 250 0 0 chr11 66920892 66920952 -54922904 + (CACG)n Simple_repeat Simple_repeat 2 61 0 7 1095 1622 256 113 23 chr11 66921941 66922500 -54921356 + Lx8 LINE L1 6132 6740 -733 7 1095 486 75 0 0 chr11 66922660 66922727 -54921129 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 7 1095 354 359 108 0 chr11 66922763 66922930 -54920926 - Tigger5 DNA MER2_type -2176 230 46 7 1095 285 270 0 0 chr11 66923283 66923346 -54920510 - tRNA-Ala-GCA tRNA tRNA -12 63 1 7 1095 224 197 67 53 chr11 66923374 66923449 -54920407 - B1F SINE Alu -30 119 44 7 1095 3149 56 20 5 chr11 66924346 66924740 -54919116 + MTB LTR MaLR 1 400 0 7 1095 413 233 0 0 chr11 66925358 66925444 -54918412 + PB1 SINE Alu 31 116 -11 7 1095 441 0 0 0 chr11 66925444 66925493 -54918363 + (CAAG)n Simple_repeat Simple_repeat 3 51 0 7 1095 216 0 0 0 chr11 66925496 66925520 -54918336 + (CCA)n Simple_repeat Simple_repeat 2 25 0 7 1095 186 354 0 12 chr11 66925524 66925604 -54918252 + MER5B DNA MER1_type 61 139 -39 7 1095 258 261 47 3 chr11 66926094 66926180 -54917676 + MIR SINE MIR 107 203 -65 7 1095 189 0 0 0 chr11 66926366 66926387 -54917469 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 7 1095 261 119 0 0 chr11 66927716 66927758 -54916098 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1095 621 204 9 0 chr11 66927972 66928080 -54915776 - B1_Mur4 SINE Alu -40 110 2 7 1095 302 292 67 104 chr11 66928080 66928139 -54915717 - MT2B LTR ERVL -448 153 101 7 1095 240 342 49 68 chr11 66929048 66929211 -54914645 + ORR1E LTR MaLR 8 167 -192 7 1095 217 333 58 23 chr11 66929597 66929683 -54914173 - L2c LINE L2 -20 3367 3279 7 1095 229 369 76 21 chr11 66929815 66929959 -54913897 + MER5B DNA MER1_type 1 152 -26 7 1095 210 37 0 0 chr11 66930940 66930967 -54912889 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1095 1159 37 0 0 chr11 66930967 66931103 -54912753 - B1_Mus2 SINE Alu -11 136 1 7 1095 240 389 87 0 chr11 66931181 66931307 -54912549 + RSINE1 SINE B4 8 144 -21 7 1095 597 114 0 0 chr11 66931335 66931449 -54912407 + (CA)n Simple_repeat Simple_repeat 2 115 0 7 1095 323 291 153 21 chr11 66931999 66932143 -54911713 + RSINE1 SINE B4 3 165 0 7 1095 477 112 15 46 chr11 66932147 66932278 -54911578 + (CA)n Simple_repeat Simple_repeat 2 128 0 7 1095 645 14 0 0 chr11 66932848 66932922 -54910934 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 1095 284 223 10 50 chr11 66933122 66933221 -54910635 + C-rich Low_complexity Low_complexity 3 97 0 7 1095 21 36 0 0 chr11 66933419 66933447 -54910409 + AT_rich Low_complexity Low_complexity 1 28 0 7 1095 221 366 121 58 chr11 66934668 66934874 -54908982 - MIRb SINE MIR -46 222 4 7 1095 748 120 194 8 chr11 66936066 66936200 -54907656 - URR1A DNA MER1_type -63 163 5 7 1095 722 266 5 25 chr11 66936354 66936551 -54907305 + B3A SINE B2 1 193 -5 7 1095 186 237 102 0 chr11 66937388 66937447 -54906409 - L2a LINE L2 0 3426 3362 7 1095 188 194 0 0 chr11 66937577 66937613 -54906243 + L2a LINE L2 3046 3081 -345 8 1095 243 271 79 45 chr11 66938385 66938474 -54905382 + BC1_Mm scRNA scRNA 2 93 -59 8 1095 21 36 0 0 chr11 66938553 66938581 -54905275 + AT_rich Low_complexity Low_complexity 1 28 0 8 1095 414 39 0 0 chr11 66939583 66939635 -54904221 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1095 635 155 38 12 chr11 66939646 66939764 -54904092 - B1_Mur2 SINE Alu -28 121 2 8 1095 334 333 92 25 chr11 66939764 66939822 -54904034 - B4 SINE B4 -200 92 24 8 1095 288 53 0 0 chr11 66939944 66939982 -54903874 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1095 241 262 22 51 chr11 66940237 66940374 -54903482 - Lx9 LINE L1 -9 7635 7503 8 1095 239 300 48 39 chr11 66940381 66940575 -54903281 - Lx7 LINE L1 0 7696 7501 8 1095 459 0 0 0 chr11 66940575 66940626 -54903230 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1095 239 300 48 39 chr11 66940626 66940660 -54903196 - Lx7 LINE L1 -196 7500 7467 8 1095 819 266 35 31 chr11 66940654 66940910 -54902946 - Lx7 LINE L1 -389 7307 7051 8 1095 4699 228 47 17 chr11 66940912 66942074 -54901782 - Lx7 LINE L1 -886 6810 5615 8 1095 367 360 71 55 chr11 66942081 66942196 -54901660 - L1M5 LINE L1 -537 5587 5473 8 1095 264 120 0 0 chr11 66942196 66942246 -54901610 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 8 1095 367 360 71 55 chr11 66942246 66942368 -54901488 - L1M5 LINE L1 -652 5472 5346 8 1095 233 323 56 106 chr11 66942402 66942582 -54901274 + MER5B DNA MER1_type 1 171 -7 8 1095 470 46 0 15 chr11 66942731 66942797 -54901059 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 8 1095 219 167 0 0 chr11 66942989 66943031 -54900825 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1095 2281 93 15 45 chr11 66943212 66943549 -54900307 + IAPLTR2b LTR ERVK 1 327 0 8 1095 296 121 91 0 chr11 66943615 66943681 -54900175 + IAPEz-int LTR ERVK 11 82 -1905 8 1095 1056 73 73 73 chr11 66943705 66943883 -54899973 + IAPEz-int LTR ERVK 18 195 -6286 8 1095 229 244 0 0 chr11 66943891 66943936 -54899920 + RLTR27 LTR ERVK 231 275 -34 8 1095 3676 58 1 16 chr11 66943936 66944514 -54899342 + IAPEz-int LTR ERVK 168 662 -5819 8 1095 2221 75 0 0 chr11 66944514 66944792 -54899064 + IAPEz-int LTR ERVK 1359 1636 -4845 8 1095 6207 37 12 13 chr11 66944791 66945536 -54898320 + IAPEz-int LTR ERVK 5736 6479 -2 8 1095 2250 90 15 45 chr11 66945538 66945875 -54897981 + IAPLTR2b LTR ERVK 1 327 0 8 1095 427 267 34 17 chr11 66946537 66946655 -54897201 + MER82 DNA MER2_type 1 120 -533 8 1095 363 44 0 0 chr11 66946996 66947041 -54896815 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 8 1095 240 357 68 23 chr11 66947641 66947773 -54896083 + MER20 DNA MER1_type 7 144 -75 8 1095 363 279 9 26 chr11 66948357 66948471 -54895385 + PB1D10 SINE Alu 4 115 -2 8 1095 210 175 0 24 chr11 66948472 66948513 -54895343 + GA-rich Low_complexity Low_complexity 1 40 0 8 1095 200 188 0 0 chr11 66948600 66948632 -54895224 + polypyrimidine Low_complexity Low_complexity 2 33 0 8 1095 24 0 0 0 chr11 66948644 66948668 -54895188 + AT_rich Low_complexity Low_complexity 1 24 0 8 1095 261 272 200 0 chr11 66948952 66949077 -54894779 - MER5A1 DNA MER1_type -10 156 7 8 1095 2096 204 32 12 chr11 66949306 66949717 -54894139 - MTD LTR MaLR 0 419 1 8 1095 791 193 7 0 chr11 66950164 66950304 -54893552 + B1_Mur3 SINE Alu 1 141 -8 8 1095 453 346 63 23 chr11 66950447 66950749 -54893107 - LTR89 LTR ERVL? -17 862 549 8 1095 1175 107 79 0 chr11 66950907 66950925 -54892931 - B2_Mm1a SINE B2 -1 192 175 8 1095 444 62 0 0 chr11 66950925 66950989 -54892867 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 8 1095 1175 107 79 0 chr11 66950989 66951148 -54892708 - B2_Mm1a SINE B2 -19 174 2 8 1095 1114 256 95 17 chr11 66951216 66951506 -54892350 + L1MC3 LINE L1 5712 6027 -1758 8 1095 288 53 0 0 chr11 66951506 66951544 -54892312 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1095 1114 253 99 17 chr11 66951544 66951669 -54892187 + L1MC3 LINE L1 6028 6159 -1626 8 1095 644 295 41 56 chr11 66951742 66952008 -54891848 + L1MC3 LINE L1 6689 6950 -835 8 1095 270 0 0 0 chr11 66952008 66952038 -54891818 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1095 888 287 83 47 chr11 66952076 66952453 -54891403 + L1MC3 LINE L1 7031 7419 -366 8 1095 317 43 21 0 chr11 66952453 66952500 -54891356 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 8 1095 888 287 83 47 chr11 66952500 66952616 -54891240 + L1MC3 LINE L1 7420 7541 -244 8 1095 234 91 0 0 chr11 66952752 66952785 -54891071 + U2 snRNA snRNA 4 36 -152 8 1095 302 102 34 0 chr11 66954303 66954362 -54889494 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 8 1095 931 249 24 0 chr11 66956143 66956352 -54887504 + ID_B1 SINE B4 1 214 -10 8 1095 245 269 0 0 chr11 66956468 66956520 -54887336 + L1MB3 LINE L1 5876 5927 -256 8 1095 240 288 27 14 chr11 66956555 66956629 -54887227 + L1MB3 LINE L1 6037 6111 -78 8 1095 300 304 41 7 chr11 66957831 66957977 -54885879 + L1ME3A LINE L1 6019 6169 -4 8 1095 478 217 146 50 chr11 66958852 66959051 -54884805 - Lx5 LINE L1 0 7050 6833 8 1095 1303 128 5 0 chr11 66959051 66959247 -54884609 - Lx5 LINE L1 -1069 5981 5785 8 1095 259 257 57 0 chr11 66959304 66959374 -54884482 - ID4 SINE ID -7 76 3 8 1095 626 282 73 16 chr11 66960039 66960284 -54883572 + L1MC2 LINE L1 6051 6309 -35 8 1095 240 409 0 9 chr11 66960298 66960409 -54883447 + PB1D10 SINE Alu 1 110 -7 8 1095 3855 118 169 1 chr11 66960803 66961445 -54882411 - L1VL2 LINE L1 -5872 1110 364 8 1095 241 333 58 35 chr11 66961613 66961787 -54882069 + MIRb SINE MIR 89 266 -2 8 1095 477 50 0 0 chr11 66963774 66963834 -54880022 + (GA)n Simple_repeat Simple_repeat 2 61 0 8 1095 591 57 80 0 chr11 66964067 66964155 -54879701 - BC1_Mm scRNA scRNA -57 95 1 8 1095 292 182 36 200 chr11 66964115 66964225 -54879631 - ZP3AR Satellite Satellite -77 135 44 8 1095 1182 289 62 35 chr11 66964226 66964877 -54878979 + L1ME2z LINE L1 5304 5972 -472 8 1095 184 151 18 70 chr11 66964914 66964971 -54878885 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 8 1095 241 308 32 42 chr11 66965058 66965153 -54878703 + Kanga1a DNA Tc2 5 98 -656 8 1095 603 67 0 0 chr11 66966473 66966562 -54877294 + (GGGAGA)n Simple_repeat Simple_repeat 1 89 0 8 1095 537 234 119 0 chr11 66967302 66967503 -54876353 + L1MD2 LINE L1 4987 5211 -935 8 1095 283 369 57 36 chr11 66967622 66967903 -54875953 + B4A SINE B4 6 292 0 8 1095 375 23 0 0 chr11 66967985 66968029 -54875827 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 1095 709 161 11 74 chr11 66968037 66968212 -54875644 - ORR1C1 LTR MaLR -214 164 1 8 1095 489 260 156 54 chr11 66968241 66968574 -54875282 + L1MD2 LINE L1 5569 5935 -424 8 1095 1213 54 0 0 chr11 66968590 66968738 -54875118 - B1_Mus1 SINE Alu 0 148 1 8 1095 735 295 20 16 chr11 66969364 66969619 -54874237 + MER2 DNA MER2_type 90 345 0 8 1095 502 316 0 7 chr11 66969671 66969808 -54874048 + RSINE1 SINE B4 3 138 -27 8 1095 21 36 0 0 chr11 66969833 66969861 -54873995 + AT_rich Low_complexity Low_complexity 1 28 0 8 1095 459 86 0 0 chr11 66970092 66970162 -54873694 - Lx2 LINE L1 0 6997 6928 8 1095 315 0 0 0 chr11 66970195 66970230 -54873626 + (TC)n Simple_repeat Simple_repeat 2 36 0 8 1095 711 221 14 0 chr11 66970271 66970411 -54873445 - ID_B1 SINE B4 0 224 83 8 1095 1000 233 0 10 chr11 66970970 66971174 -54872682 + B3 SINE B2 8 209 -7 8 1095 499 208 0 15 chr11 66971369 66971501 -54872355 + GA-rich Low_complexity Low_complexity 4 133 0 8 1095 759 295 103 93 chr11 66972709 66973230 -54870626 + Lx8 LINE L1 6894 7435 -38 8 1095 557 61 12 0 chr11 66973230 66973312 -54870544 + (CA)n Simple_repeat Simple_repeat 2 84 0 8 1095 189 107 0 0 chr11 66973316 66973344 -54870512 + (TAGG)n Simple_repeat Simple_repeat 4 31 0 8 1095 759 295 103 93 chr11 66973344 66973389 -54870467 + Lx8 LINE L1 7436 7471 -2 8 1095 23 0 0 0 chr11 66974068 66974091 -54869765 + AT_rich Low_complexity Low_complexity 1 23 0 8 1095 195 69 0 0 chr11 66974133 66974162 -54869694 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1095 683 24 0 12 chr11 66974374 66974460 -54869396 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 8 1095 329 299 177 0 chr11 66974610 66974757 -54869099 - MER5A DNA MER1_type -8 181 9 8 1095 2905 56 5 15 chr11 66975121 66975404 -54868452 - MTA_Mm LTR MaLR 0 396 117 8 1095 3643 13 0 0 chr11 66975404 66975800 -54868056 + MTA_Mm LTR MaLR 1 396 0 8 1095 2905 56 5 15 chr11 66975800 66975916 -54867940 - MTA_Mm LTR MaLR -280 116 1 8 1095 438 20 0 0 chr11 66976113 66976164 -54867692 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 1095 705 182 1 0 chr11 66976164 66976299 -54867557 - B1_Mur1 SINE Alu -12 137 2 8 1096 387 91 44 22 chr11 66977820 66977910 -54865946 + (TCTG)n Simple_repeat Simple_repeat 1 92 0 8 1096 260 263 21 0 chr11 66977922 66978017 -54865839 + (TCTG)n Simple_repeat Simple_repeat 4 100 0 8 1096 365 183 10 0 chr11 66978018 66978122 -54865734 + CT-rich Low_complexity Low_complexity 2 106 0 8 1096 300 172 78 0 chr11 66978534 66978598 -54865258 + PB1D10 SINE Alu 41 109 -8 8 1096 21 0 0 0 chr11 66979033 66979054 -54864802 + AT_rich Low_complexity Low_complexity 1 21 0 8 1096 280 333 25 34 chr11 66979717 66979835 -54864021 + PB1D10 SINE Alu 1 117 0 8 1096 432 180 0 0 chr11 66980368 66980490 -54863366 + CT-rich Low_complexity Low_complexity 2 123 0 8 1096 610 200 0 0 chr11 66980493 66980603 -54863253 - RSINE1 SINE B4 -54 111 2 8 1096 774 48 0 0 chr11 66980788 66980891 -54862965 + (GA)n Simple_repeat Simple_repeat 2 104 0 8 1096 23 0 0 0 chr11 66981008 66981031 -54862825 + AT_rich Low_complexity Low_complexity 1 23 0 8 1096 1292 68 6 0 chr11 66981099 66981275 -54862581 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 8 1096 216 272 85 35 chr11 66981716 66981857 -54861999 - MIRb SINE MIR -35 233 86 8 1096 25 0 0 0 chr11 66983294 66983319 -54860537 + AT_rich Low_complexity Low_complexity 1 25 0 8 1096 378 0 0 0 chr11 66983604 66983646 -54860210 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1096 281 330 6 3 chr11 66985759 66985880 -54857976 - MIRc SINE MIR -105 163 38 8 1096 1175 171 36 9 chr11 66986051 66986270 -54857586 - URR1B DNA MER1_type 0 225 1 8 1096 954 214 48 0 chr11 66986291 66986478 -54857378 + B3 SINE B2 1 196 -20 8 1096 261 240 0 0 chr11 66987305 66987380 -54856476 + CT-rich Low_complexity Low_complexity 5 79 0 8 1096 226 411 0 18 chr11 66987784 66987898 -54855958 - MamRep1894 DNA hAT -1 122 11 8 1096 513 0 0 0 chr11 66989899 66989956 -54853900 + (GA)n Simple_repeat Simple_repeat 1 57 0 8 1096 189 74 0 0 chr11 66989956 66989982 -54853874 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1096 333 0 0 0 chr11 66990316 66990353 -54853503 + (CTA)n Simple_repeat Simple_repeat 2 38 0 8 1096 621 164 41 0 chr11 66990362 66990484 -54853372 - L1MA7 LINE L1 -1 6290 6164 8 1096 22 0 0 0 chr11 66991332 66991354 -54852502 + AT_rich Low_complexity Low_complexity 1 22 0 8 1096 390 129 0 0 chr11 66994112 66994174 -54849682 + (A)n Simple_repeat Simple_repeat 1 62 0 9 1096 296 243 77 16 chr11 66995843 66995945 -54847911 + PB1D10 SINE Alu 9 112 -36 9 1096 918 136 277 0 chr11 66996192 66996369 -54847487 - URR1A DNA MER1_type 0 226 1 9 1096 704 296 62 37 chr11 66996583 66996825 -54847031 + B4 SINE B4 15 262 -30 9 1096 441 0 0 0 chr11 66996888 66996937 -54846919 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1096 329 303 75 8 chr11 66997546 66997679 -54846177 - MIRc SINE MIR -51 217 76 9 1096 320 220 91 9 chr11 66998011 66998121 -54845735 - Lx9 LINE L1 -3 7641 7523 9 1096 193 0 61 30 chr11 66998130 66998163 -54845693 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 9 1096 417 237 17 34 chr11 66998360 66998478 -54845378 + B1_Mur1 SINE Alu 34 149 0 9 1096 220 176 37 56 chr11 66999741 66999795 -54844061 + MER5B DNA MER1_type 119 171 -7 9 1096 221 190 0 49 chr11 67000905 67000946 -54842910 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 1 1096 438 69 0 0 chr11 67000946 67001004 -54842852 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1096 221 190 0 49 chr11 67001004 67001023 -54842833 + (TATATG)n Simple_repeat Simple_repeat 2 20 0 3 1096 225 227 0 54 chr11 67001225 67001318 -54842538 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 1096 396 0 0 0 chr11 67003761 67003805 -54840051 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1096 246 295 12 71 chr11 67004210 67004294 -54839562 - ID2 SINE ID -3 80 2 6 1096 270 294 123 25 chr11 67004383 67004505 -54839351 + RSINE1 SINE B4 10 143 -22 7 1096 324 0 0 0 chr11 67004507 67004543 -54839313 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1096 204 152 133 17 chr11 67005694 67005754 -54838102 + L2b LINE L2 3242 3308 -67 9 1096 934 216 65 10 chr11 67008948 67009149 -54834707 + B3 SINE B2 5 216 0 1 1096 345 296 17 1 chr11 67009726 67009861 -54833995 + L1M5 LINE L1 3548 3684 -2462 1 1096 405 0 0 0 chr11 67010179 67010224 -54833632 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1096 658 213 7 0 chr11 67010301 67010437 -54833419 + B3A SINE B2 1 137 -61 1 1096 326 115 16 0 chr11 67010454 67010515 -54833341 + (CATA)n Simple_repeat Simple_repeat 1 62 0 1 1096 315 0 0 0 chr11 67011746 67011781 -54832075 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1096 240 163 0 0 chr11 67013860 67013903 -54829953 + CT-rich Low_complexity Low_complexity 1 43 0 1 1096 252 0 0 0 chr11 67016801 67016829 -54827027 + (AGGGGG)n Simple_repeat Simple_repeat 3 30 0 1 1096 183 323 41 10 chr11 67020367 67020464 -54823392 + MIRb SINE MIR 157 256 -12 1 1096 1135 281 69 47 chr11 67021245 67021259 -54822597 - Lx8 LINE L1 -8 7465 7452 1 1096 330 26 0 0 chr11 67021259 67021298 -54822558 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1096 1135 281 69 47 chr11 67021298 67021749 -54822107 - Lx8 LINE L1 -22 7451 6990 1 1096 993 98 0 0 chr11 67025911 67026054 -54817802 + (TCTCCC)n Simple_repeat Simple_repeat 6 148 0 2 1096 210 118 0 0 chr11 67026071 67026105 -54817751 + (CGTG)n Simple_repeat Simple_repeat 1 34 0 2 1096 213 132 0 0 chr11 67029614 67029652 -54814204 + (TAGG)n Simple_repeat Simple_repeat 2 39 0 2 1096 278 379 27 7 chr11 67029728 67029874 -54813982 + B1F SINE Alu 1 149 0 2 1096 252 167 0 0 chr11 67032948 67032996 -54810860 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1096 461 221 143 47 chr11 67035431 67035623 -54808233 + B3 SINE B2 7 211 -5 2 1096 789 157 0 0 chr11 67038747 67038900 -54804956 + (CA)n Simple_repeat Simple_repeat 2 154 0 2 1096 277 188 12 12 chr11 67039961 67040047 -54803809 + CT-rich Low_complexity Low_complexity 1 86 0 2 1096 255 93 0 0 chr11 67040185 67040228 -54803628 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1096 378 0 0 0 chr11 67040234 67040276 -54803580 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1096 4569 117 64 41 chr11 67040276 67041147 -54802709 + RMER17A2 LTR ERVK 2 892 -14 3 1096 309 51 0 0 chr11 67041152 67041191 -54802665 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1096 643 285 114 19 chr11 67041622 67041805 -54802051 + L1M3a LINE L1 1537 1732 -5037 3 1096 528 59 0 0 chr11 67041805 67041873 -54801983 + (TAA)n Simple_repeat Simple_repeat 3 70 0 3 1096 643 285 114 19 chr11 67041873 67042057 -54801799 + L1M3a LINE L1 1733 1938 -4831 3 1096 1028 198 57 96 chr11 67042060 67042445 -54801411 + RLTR14 LTR ERV1 13 382 0 3 1096 402 303 113 55 chr11 67042467 67043146 -54800710 + L1M3a LINE L1 1985 2688 -4161 3 1096 319 259 51 51 chr11 67043168 67043286 -54800570 - PB1D7 SINE Alu -2 118 1 3 1096 892 249 91 11 chr11 67043543 67043819 -54800037 + L1MA9 LINE L1 5787 6084 -228 3 1096 248 278 75 32 chr11 67044685 67044778 -54799078 - MIRb SINE MIR -83 185 89 3 1096 261 346 15 22 chr11 67045130 67045266 -54798590 + L2 LINE L2 2251 2385 -1034 3 1096 1233 259 37 26 chr11 67045472 67045824 -54798032 - ORR1E LTR MaLR 0 359 4 4 1096 1172 218 110 32 chr11 67046176 67046522 -54797334 + ORR1D1 LTR MaLR 1 373 -1 4 1096 801 258 6 0 chr11 67046546 67046728 -54797128 + B3 SINE B2 34 216 0 4 1096 206 246 0 34 chr11 67047381 67047440 -54796416 + CT-rich Low_complexity Low_complexity 3 59 0 4 1096 654 13 0 0 chr11 67048426 67048501 -54795355 + (GGA)n Simple_repeat Simple_repeat 1 75 0 4 1096 293 350 48 27 chr11 67049011 67049158 -54794698 - LTR89 LTR ERVL? -11 868 719 4 1096 202 62 62 0 chr11 67051725 67051757 -54792099 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1096 367 318 30 6 chr11 67051994 67052172 -54791684 + MIRc SINE MIR 8 185 -23 4 1096 734 201 27 20 chr11 67053524 67053671 -54790185 - B1_Mur2 SINE Alu 0 149 2 4 1096 503 130 10 0 chr11 67058439 67058539 -54785317 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 1096 609 227 35 28 chr11 67060284 67060429 -54783427 - B1_Mur1 SINE Alu -1 148 3 5 1096 667 281 5 27 chr11 67060844 67061054 -54782802 + B3A SINE B2 1 207 -9 5 1096 968 202 130 10 chr11 67062333 67062533 -54781323 + URR1B DNA MER1_type 2 225 0 5 1096 22 0 0 0 chr11 67066320 67066342 -54777514 + AT_rich Low_complexity Low_complexity 1 22 0 5 1096 375 23 0 0 chr11 67071375 67071419 -54772437 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 5 1096 480 328 58 23 chr11 67072931 67073190 -54770666 - Arthur1C DNA Tip100 -14 349 82 5 1096 207 88 0 0 chr11 67073268 67073302 -54770554 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1096 340 277 89 0 chr11 67075760 67075861 -54767995 + B3A SINE B2 1 110 -88 5 1096 208 358 39 4 chr11 67075887 67076073 -54767783 + L2b LINE L2 3230 3424 -2 5 1096 493 306 72 112 chr11 67076200 67076755 -54767101 + L1MDa LINE L1 490 1022 -6080 5 1096 432 299 122 20 chr11 67076894 67077140 -54766716 + L1MDa LINE L1 1326 1596 -5506 5 1096 396 283 181 30 chr11 67077172 67077409 -54766447 + B4A SINE B4 2 274 -18 6 1096 450 181 21 0 chr11 67077561 67077655 -54766201 + L1MDa LINE L1 2658 2753 -4581 5 1096 235 266 255 17 chr11 67077652 67077900 -54765956 + L1MDa LINE L1 2876 3182 -4152 5 1096 319 279 25 0 chr11 67077900 67077979 -54765877 + ID4_ SINE ID 3 83 0 6 1096 235 266 255 17 chr11 67077979 67078028 -54765828 + L1MDa LINE L1 3183 3243 -4091 5 1096 344 245 112 74 chr11 67078053 67078322 -54765534 + L1M4 LINE L1 2143 2421 -3725 6 1096 311 323 44 25 chr11 67078370 67078529 -54765327 + L1M4 LINE L1 4788 4949 -1197 6 1096 244 264 40 40 chr11 67078690 67078765 -54765091 + ID4 SINE ID 8 82 -1 6 1096 509 302 70 36 chr11 67078917 67079305 -54764551 + L1M4 LINE L1 5306 5706 -738 6 1096 295 271 62 78 chr11 67079322 67079450 -54764406 + PB1 SINE Alu 2 127 0 6 1096 237 317 56 24 chr11 67081713 67081839 -54762017 - MIRb SINE MIR -36 232 103 6 1096 639 199 95 7 chr11 67081996 67082133 -54761723 - B1_Mur2 SINE Alu 0 149 1 6 1096 497 309 6 27 chr11 67082595 67082778 -54761078 + B3A SINE B2 1 179 -19 6 1096 430 188 24 79 chr11 67082903 67083030 -54760826 + MER106B DNA MER1_type 33 152 -907 6 1096 22 56 0 0 chr11 67083124 67083160 -54760696 + AT_rich Low_complexity Low_complexity 1 36 0 6 1096 956 69 114 0 chr11 67083533 67083664 -54760192 + B1_Mus2 SINE Alu 2 147 0 7 1096 443 155 12 0 chr11 67083883 67083967 -54759889 + GA-rich Low_complexity Low_complexity 3 87 0 7 1096 987 215 29 5 chr11 67083994 67084204 -54759652 + B3 SINE B2 2 216 0 7 1096 317 316 101 39 chr11 67084253 67084559 -54759297 + L1MD LINE L1 4840 5164 -982 7 1096 577 268 107 41 chr11 67084629 67085041 -54758815 + L1ME1 LINE L1 5266 5704 -475 7 1096 321 236 47 9 chr11 67085125 67085232 -54758624 + L1ME1 LINE L1 5876 5986 -193 7 1096 662 244 36 12 chr11 67085641 67085807 -54758049 + B3 SINE B2 1 170 -46 7 1096 360 0 0 0 chr11 67085819 67085859 -54757997 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1096 642 295 42 15 chr11 67085919 67086184 -54757672 - L1MB5 LINE L1 -241 5933 5662 7 1096 694 263 11 6 chr11 67086187 67086367 -54757489 + B3A SINE B2 2 182 -16 7 1096 1296 128 5 0 chr11 67086517 67086705 -54757151 + B2_Mm2 SINE B2 2 190 -5 7 1096 483 18 0 0 chr11 67087010 67087066 -54756790 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 1096 554 242 25 0 chr11 67087091 67087211 -54756645 + ID_B1 SINE B4 95 217 -7 8 1096 546 16 0 0 chr11 67087298 67087361 -54756495 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1096 863 185 202 0 chr11 67088163 67088341 -54755515 + B3 SINE B2 1 214 -2 8 1096 22 0 0 0 chr11 67088824 67088846 -54755010 + AT_rich Low_complexity Low_complexity 1 22 0 8 1096 216 0 0 0 chr11 67088953 67088977 -54754879 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1096 25 31 0 0 chr11 67089042 67089074 -54754782 + AT_rich Low_complexity Low_complexity 1 32 0 8 1096 468 0 0 0 chr11 67091262 67091314 -54752542 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1096 272 280 0 29 chr11 67093000 67093103 -54750753 - L1M2 LINE L1 -584 5716 5617 8 1096 260 259 11 23 chr11 67093115 67093202 -54750654 + L1MA5 LINE L1 6209 6294 -6 8 1096 297 89 0 0 chr11 67095104 67095149 -54748707 + (TTAA)n Simple_repeat Simple_repeat 2 46 0 9 1096 222 364 80 36 chr11 67095235 67095372 -54748484 + MIR3 SINE MIR 34 176 -32 9 1096 357 256 66 71 chr11 67095403 67095601 -54748255 + L1MC5 LINE L1 7735 7931 -30 9 1096 1117 296 92 11 chr11 67095645 67096219 -54747637 + L1MB3 LINE L1 5510 6130 -53 9 1096 365 274 0 68 chr11 67096362 67096495 -54747361 + B4A SINE B4 165 288 -4 9 1096 308 83 0 20 chr11 67098910 67098959 -54744897 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1096 399 127 0 0 chr11 67100271 67100334 -54743522 + (TTA)n Simple_repeat Simple_repeat 1 63 0 9 1096 692 253 0 0 chr11 67101024 67101170 -54742686 + B1_Mur2 SINE Alu 4 149 0 9 1096 1443 45 0 0 chr11 67101186 67101365 -54742491 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 9 1096 477 132 29 52 chr11 67101365 67101492 -54742364 + GA-rich Low_complexity Low_complexity 11 135 0 9 1096 195 129 0 0 chr11 67102399 67102430 -54741426 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1096 295 306 0 12 chr11 67102479 67102565 -54741291 - B4A SINE B4 -10 282 198 1 1096 2397 51 20 0 chr11 67103835 67104129 -54739727 - L1_Mus1 LINE L1 0 6567 6268 1 1096 410 266 9 9 chr11 67104221 67104335 -54739521 - PB1D10 SINE Alu -1 116 3 1 1096 513 122 0 0 chr11 67104640 67104714 -54739142 + tRNA-Pro-CCA tRNA tRNA 1 74 -1 1 1096 201 182 0 0 chr11 67105602 67105635 -54738221 + A-rich Low_complexity Low_complexity 1 33 0 1 1096 21 0 0 0 chr11 67107268 67107289 -54736567 + AT_rich Low_complexity Low_complexity 1 21 0 1 1096 234 308 64 64 chr11 67108453 67108578 -54735278 + B1F SINE Alu 23 147 -2 1 0 533 214 9 9 chr11 67108778 67108891 -54734965 + B1_Mur2 SINE Alu 32 144 -5 1 1097 3812 42 0 0 chr11 67109511 67109961 -54733895 + L1Md_T LINE L1 6133 6582 0 1 1097 557 52 13 0 chr11 67111540 67111617 -54732239 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 1 1097 189 107 0 0 chr11 67111626 67111654 -54732202 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1 1097 340 327 0 0 chr11 67111658 67111759 -54732097 - PB1D10 SINE Alu 0 117 17 1 1097 23 33 0 0 chr11 67112362 67112392 -54731464 + AT_rich Low_complexity Low_complexity 1 30 0 1 1097 586 66 22 11 chr11 67112634 67112726 -54731130 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 1 1097 1678 32 0 0 chr11 67114169 67114358 -54729498 + B2_Mm1a SINE B2 1 189 -4 1 1097 752 258 0 66 chr11 67115726 67115938 -54727918 + B3A SINE B2 1 198 0 1 1097 435 358 0 0 chr11 67116100 67116248 -54727608 + B1F2 SINE Alu 2 149 0 1 1097 354 328 16 40 chr11 67116253 67116377 -54727479 + RSINE1 SINE B4 6 126 -39 1 1097 228 297 160 8 chr11 67117491 67117610 -54726246 + MIR SINE MIR 97 237 -31 1 1097 348 303 18 0 chr11 67118786 67118895 -54724961 - PB1D10 SINE Alu -2 115 5 1 1097 232 302 31 10 chr11 67120010 67120107 -54723749 + GA-rich Low_complexity Low_complexity 1 99 0 1 1097 207 146 0 0 chr11 67120533 67120574 -54723282 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1097 755 212 33 113 chr11 67121310 67121523 -54722333 + B3 SINE B2 8 203 -13 1 1097 183 100 0 0 chr11 67121526 67121556 -54722300 + (TATG)n Simple_repeat Simple_repeat 2 31 0 1 1097 875 229 84 0 chr11 67122265 67122583 -54721273 - MTD LTR MaLR -49 370 1 1 1097 354 200 0 70 chr11 67122684 67122770 -54721086 - PB1D10 SINE Alu -9 108 29 1 1097 285 326 202 32 chr11 67122883 67123283 -54720573 - L2a LINE L2 -2 3424 2957 1 1097 200 324 95 38 chr11 67123357 67123620 -54720236 - L2a LINE L2 -558 2861 2584 1 1097 210 339 0 0 chr11 67123629 67123685 -54720171 + G-rich Low_complexity Low_complexity 3 58 0 1 1097 705 140 367 6 chr11 67123949 67124107 -54719749 + B3 SINE B2 2 216 0 1 1097 560 233 46 35 chr11 67124211 67124412 -54719444 + L1MC LINE L1 5063 5258 -888 1 1097 369 302 108 22 chr11 67124477 67124745 -54719111 + L1MC LINE L1 5494 5784 -395 1 1097 323 210 86 20 chr11 67124757 67124870 -54718986 + RLTR11A LTR ERVK 10 125 -320 1 1097 387 0 0 0 chr11 67125043 67125086 -54718770 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1097 541 246 16 25 chr11 67125266 67125387 -54718469 + RSINE1 SINE B4 2 121 -44 1 1097 236 196 100 80 chr11 67125935 67126035 -54717821 - L1MD LINE L1 -1610 4536 4435 1 1097 707 207 4 150 chr11 67126539 67126766 -54717090 + MTC LTR MaLR 224 417 -4 1 1097 22 56 0 0 chr11 67126834 67126870 -54716986 + AT_rich Low_complexity Low_complexity 1 36 0 1 1097 611 284 72 18 chr11 67126898 67127120 -54716736 - B4 SINE B4 -56 236 3 1 1097 26 0 0 0 chr11 67127120 67127146 -54716710 + AT_rich Low_complexity Low_complexity 1 26 0 1 1097 25 0 0 0 chr11 67127212 67127237 -54716619 + AT_rich Low_complexity Low_complexity 1 25 0 1 1097 254 253 79 22 chr11 67128093 67128182 -54715674 + PB1D7 SINE Alu 24 117 -3 1 1097 216 67 0 0 chr11 67128859 67128889 -54714967 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1097 935 226 60 89 chr11 67128991 67129333 -54714523 + L1MA6 LINE L1 5967 6296 -7 1 1097 243 318 48 0 chr11 67129443 67129506 -54714350 + ID4_ SINE ID 18 83 0 1 1097 185 275 188 47 chr11 67129581 67129837 -54714019 + L2a LINE L2 2957 3248 -178 1 1097 308 222 112 64 chr11 67130944 67131069 -54712787 + L1MA10 LINE L1 6178 6308 -26 1 1097 281 209 69 154 chr11 67131195 67131325 -54712531 - MLT1A1 LTR MaLR -274 134 16 1 1097 37 0 0 0 chr11 67131414 67131451 -54712405 + AT_rich Low_complexity Low_complexity 1 37 0 1 1097 1110 95 0 0 chr11 67131451 67131598 -54712258 - B1_Mm SINE Alu 0 147 1 1 1097 194 119 48 0 chr11 67132420 67132462 -54711394 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 1 1097 216 281 31 0 chr11 67132681 67132745 -54711111 + B4 SINE B4 2 67 -225 1 1097 291 145 0 0 chr11 67133029 67133098 -54710758 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1097 727 256 86 119 chr11 67133099 67133401 -54710455 - B4A SINE B4 0 292 1 1 1097 22 70 0 0 chr11 67133401 67133444 -54710412 + AT_rich Low_complexity Low_complexity 1 43 0 1 1097 411 349 73 0 chr11 67133720 67133912 -54709944 + MIR SINE MIR 50 255 -7 1 1097 217 273 18 0 chr11 67134236 67134291 -54709565 + ID4_ SINE ID 2 57 -26 1 1097 207 25 75 0 chr11 67136382 67136422 -54707434 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1097 27 29 0 0 chr11 67136422 67136456 -54707400 + AT_rich Low_complexity Low_complexity 1 34 0 1 1097 209 339 71 9 chr11 67137406 67137519 -54706337 + L3 LINE CR1 3765 3884 -605 1 1097 436 238 52 29 chr11 67138320 67138493 -54705363 + Charlie1a DNA MER1_type 857 1033 -422 1 1097 204 67 0 0 chr11 67138579 67138609 -54705247 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 1 1097 233 233 238 6 chr11 67138641 67138801 -54705055 + Charlie1a DNA MER1_type 1156 1352 -103 1 1097 24 0 0 0 chr11 67139361 67139385 -54704471 + AT_rich Low_complexity Low_complexity 1 24 0 1 1097 266 289 36 0 chr11 67139992 67140075 -54703781 + MER5A DNA MER1_type 1 86 -103 1 1097 498 320 66 9 chr11 67141658 67141869 -54701987 - MamGypLTR1c LTR Gypsy -579 224 2 1 1097 663 332 36 16 chr11 67143436 67143745 -54700111 - MLT1C LTR MaLR -1 466 152 1 1097 593 265 42 38 chr11 67143744 67143956 -54699900 - MLT1C LTR MaLR -251 216 4 1 1097 852 338 136 9 chr11 67144793 67145226 -54698630 - MER21B LTR ERV1 -111 752 265 1 1097 216 204 0 22 chr11 67145308 67145353 -54698503 + (CATAC)n Simple_repeat Simple_repeat 1 44 0 1 1097 198 396 20 0 chr11 67145552 67145653 -54698203 - MER5A DNA MER1_type -4 185 83 1 1097 207 0 0 0 chr11 67145685 67145708 -54698148 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 1 1097 275 312 87 76 chr11 67146436 67146620 -54697236 - B4A SINE B4 -1 291 106 1 1097 480 35 0 0 chr11 67147444 67147502 -54696354 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1097 208 296 58 76 chr11 67148979 67149151 -54694705 - MIRb SINE MIR -56 212 44 1 1097 503 217 75 20 chr11 67149620 67149766 -54694090 - RMER30 DNA MER1_type -32 170 17 1 1097 231 256 129 32 chr11 67149774 67149867 -54693989 - MER2 DNA MER2_type -223 122 21 1 1097 391 265 50 17 chr11 67152140 67152259 -54691597 - MLT1E1A LTR MaLR -537 143 21 1 1097 373 278 71 0 chr11 67152544 67152670 -54691186 - MTD LTR MaLR -284 135 1 1 1097 294 313 137 20 chr11 67152670 67152815 -54691041 - MER2 DNA MER2_type -50 295 133 1 1097 489 110 0 0 chr11 67152825 67152898 -54690958 + (TTG)n Simple_repeat Simple_repeat 2 74 0 1 1097 441 241 155 0 chr11 67152898 67153014 -54690842 - B1_Mur4 SINE Alu -10 140 7 1 1097 219 289 86 79 chr11 67153014 67153037 -54690819 - B4A SINE B4 -75 217 78 1 1097 550 319 7 0 chr11 67153074 67153212 -54690644 - RSINE1 SINE B4 -24 141 3 1 1097 180 0 0 0 chr11 67153303 67153323 -54690533 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1097 711 215 15 0 chr11 67153323 67153458 -54690398 - B1_Mur2 SINE Alu -10 139 3 1 1097 224 404 53 0 chr11 67155462 67155556 -54688300 + PB1D10 SINE Alu 3 101 -16 1 1097 680 185 166 24 chr11 67156255 67156460 -54687396 - L1MB5 LINE L1 -15 6169 5936 1 1097 722 279 65 39 chr11 67156595 67156905 -54686951 - L1MB5 LINE L1 -244 5930 5613 1 1097 423 326 30 0 chr11 67156953 67157088 -54686768 - ID_B1 SINE B4 -2 222 84 1 1097 241 339 71 37 chr11 67157222 67157544 -54686312 + MamRep4096 DNA hAT? 81 413 -13 1 1097 415 229 0 50 chr11 67157854 67157955 -54685901 + PB1D10 SINE Alu 22 117 0 1 1097 271 294 36 9 chr11 67158687 67158797 -54685059 + PB1D10 SINE Alu 5 117 0 1 1097 283 256 0 55 chr11 67159266 67159357 -54684499 - MIR SINE MIR -90 172 87 1 1097 704 213 78 112 chr11 67159472 67159884 -54683972 + RMER10A LTR ERVL 29 426 -16 1 1097 24 53 0 0 chr11 67160121 67160159 -54683697 + AT_rich Low_complexity Low_complexity 1 38 0 1 1097 369 304 51 42 chr11 67161746 67161962 -54681894 - MER20 DNA MER1_type -1 218 1 1 1097 285 29 0 0 chr11 67163284 67163318 -54680538 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1 1097 775 218 175 22 chr11 67165993 67166176 -54677680 + B3 SINE B2 3 213 -3 1 1097 723 204 15 0 chr11 67166178 67166315 -54677541 + B1_Mur2 SINE Alu 3 141 -8 1 1097 189 176 29 29 chr11 67166317 67166387 -54677469 + GA-rich Low_complexity Low_complexity 3 72 0 1 1097 597 94 0 0 chr11 67166383 67166468 -54677388 + (GGGGA)n Simple_repeat Simple_repeat 3 87 0 1 1097 21 57 0 0 chr11 67166907 67166942 -54676914 + AT_rich Low_complexity Low_complexity 1 35 0 1 1097 251 252 70 76 chr11 67167274 67167481 -54676375 + MIR SINE MIR 1 201 -61 2 1097 286 194 177 0 chr11 67167594 67167656 -54676200 + ID4_ SINE ID 9 81 -2 2 1097 801 31 0 0 chr11 67168654 67168750 -54675106 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 1097 528 238 46 8 chr11 67169861 67169992 -54673864 - MLT1A1 LTR MaLR -17 391 256 2 1097 331 179 23 23 chr11 67169992 67170078 -54673778 + CT-rich Low_complexity Low_complexity 3 88 0 2 1097 265 235 0 0 chr11 67170094 67170162 -54673694 + (TCTCTG)n Simple_repeat Simple_repeat 4 71 0 2 1097 300 227 0 29 chr11 67170181 67170249 -54673607 - ID4_ SINE ID -17 66 1 2 1097 566 285 21 7 chr11 67170305 67170450 -54673406 - B3A SINE B2 0 198 52 2 1097 281 250 0 14 chr11 67170456 67170529 -54673327 - MLT1A1 LTR MaLR 0 408 337 2 1097 309 324 61 22 chr11 67173076 67173256 -54670600 + MER113 DNA MER1_type 1 187 -334 2 1097 472 295 29 0 chr11 67173421 67173526 -54670330 - B1F1 SINE Alu -41 108 1 2 1097 269 302 45 36 chr11 67173430 67173540 -54670316 + YREP_Mm Unknown Unknown 222 332 -1480 2 1097 346 339 93 16 chr11 67175246 67175491 -54668365 + B4A SINE B4 4 175 -117 2 1097 216 0 0 0 chr11 67177287 67177311 -54666545 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1097 227 309 120 9 chr11 67177481 67177521 -54666335 + MT2B2 LTR ERVL 122 173 -411 2 1097 331 200 186 0 chr11 67177521 67177591 -54666265 + PB1D10 SINE Alu 3 85 -32 2 1097 1320 190 8 8 chr11 67177591 67177830 -54666026 + 7SK RNA RNA 1 239 -92 2 1097 317 254 75 0 chr11 67177825 67177892 -54665964 + B1F SINE Alu 71 142 -7 2 1097 243 0 0 0 chr11 67177894 67177921 -54665935 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1097 333 0 0 0 chr11 67179053 67179090 -54664766 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1097 1069 64 14 0 chr11 67179090 67179231 -54664625 - B1_Mus1 SINE Alu 0 148 6 2 1097 234 254 33 17 chr11 67179128 67179248 -54664608 - ORR1B1-int LTR MaLR -755 754 633 2 1097 265 100 0 39 chr11 67180072 67180124 -54663732 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 1097 557 207 129 0 chr11 67181357 67181473 -54662383 - B1_Mur2 SINE Alu -17 132 2 2 1097 204 232 18 18 chr11 67181992 67182049 -54661807 + GA-rich Low_complexity Low_complexity 2 58 0 2 1097 207 0 0 0 chr11 67183244 67183267 -54660589 + (CAGAC)n Simple_repeat Simple_repeat 3 25 0 2 1097 233 330 129 10 chr11 67183598 67183699 -54660157 + PB1D10 SINE Alu 4 116 -1 2 1097 248 239 27 40 chr11 67184731 67184805 -54659051 + LTR45C LTR ERV1 399 471 -68 2 1097 287 272 0 24 chr11 67185264 67185347 -54658509 + ID2 SINE ID 3 83 0 2 1097 1069 259 68 131 chr11 67185394 67185721 -54658135 + L1MA7 LINE L1 5455 5781 -510 2 1097 1000 252 95 0 chr11 67185721 67185983 -54657873 + B4A SINE B4 2 288 -4 2 1097 1069 259 68 131 chr11 67185983 67186321 -54657535 + L1MA7 LINE L1 5782 6078 -213 2 1097 847 163 0 28 chr11 67186481 67186626 -54657230 + B1_Mur2 SINE Alu 2 142 -7 2 1097 579 147 0 0 chr11 67186633 67186735 -54657121 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 1097 197 239 0 21 chr11 67186891 67186938 -54656918 - MIRm SINE MIR -227 49 4 2 1097 380 314 28 28 chr11 67187467 67187608 -54656248 + MIRb SINE MIR 26 166 -102 2 1097 572 255 6 70 chr11 67187634 67187828 -54656028 - B3A SINE B2 0 216 36 2 1097 280 298 96 38 chr11 67187880 67188037 -54655819 + MIRb SINE MIR 97 262 0 2 1097 942 239 16 60 chr11 67188396 67188645 -54655211 - RMER1C Other Other -37 1305 1068 2 1097 470 304 99 65 chr11 67188677 67188969 -54654887 - RMER1C Other Other -624 718 417 2 1097 351 311 28 0 chr11 67189160 67189266 -54654590 - RMER1B Other Other -913 153 45 2 1097 1126 295 114 86 chr11 67190277 67190986 -54652870 + RMER13A LTR ERVK 1 729 -131 2 1097 314 294 99 40 chr11 67191279 67191431 -54652425 + LTR33 LTR ERVL 20 180 -335 2 1097 262 330 32 21 chr11 67191616 67191709 -54652147 + LTR33 LTR ERVL 422 515 0 2 1097 1115 270 91 17 chr11 67191933 67192283 -54651573 + MER63D DNA AcHobo 1 376 -685 2 1097 253 323 48 72 chr11 67192590 67192757 -54651099 - MLT1K LTR MaLR -33 562 400 2 1097 223 130 65 0 chr11 67192760 67192806 -54651050 + CT-rich Low_complexity Low_complexity 4 52 0 2 1097 556 273 12 30 chr11 67192864 67193030 -54650826 - RSINE1 SINE B4 0 165 3 2 1097 392 242 145 78 chr11 67193221 67193400 -54650456 - MLT1K LTR MaLR -398 197 7 2 1097 213 315 17 69 chr11 67193989 67194105 -54649751 - L2b LINE L2 0 3375 3266 2 1097 263 284 50 86 chr11 67194371 67194510 -54649346 - MIRb SINE MIR -1 267 134 2 1097 477 0 0 0 chr11 67194547 67194600 -54649256 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1097 366 23 0 0 chr11 67194600 67194642 -54649214 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1097 506 230 110 7 chr11 67195767 67195903 -54647953 + MER5A1 DNA MER1_type 2 151 -15 2 1097 335 325 29 98 chr11 67195920 67196094 -54647762 + Charlie10 DNA MER1_type 1 162 -2660 2 1097 425 285 145 48 chr11 67196203 67196369 -54647487 - MER5A DNA MER1_type 0 189 8 2 1097 274 247 82 10 chr11 67196436 67196534 -54647322 + Charlie1b DNA MER1_type 363 467 -56 2 1097 381 323 141 28 chr11 67197288 67197543 -54646313 + L1M5 LINE L1 3554 3837 -2309 2 1097 220 182 0 0 chr11 67197593 67197626 -54646230 + B4 SINE B4 45 77 -215 2 1097 399 286 0 39 chr11 67197659 67197761 -54646095 + B4 SINE B4 84 181 -111 2 1097 450 0 0 0 chr11 67197949 67197999 -54645857 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1097 278 26 0 25 chr11 67197999 67198039 -54645817 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1097 582 254 22 7 chr11 67198098 67198237 -54645619 + B1F SINE Alu 6 146 -3 2 1097 303 85 0 0 chr11 67198257 67198304 -54645552 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1097 201 74 0 0 chr11 67199651 67199678 -54644178 + (TGG)n Simple_repeat Simple_repeat 1 27 0 2 1097 448 275 27 55 chr11 67199708 67199854 -54644002 + B3A SINE B2 57 198 0 2 1097 183 106 41 41 chr11 67199857 67199867 -54643989 + (TAA)n Simple_repeat Simple_repeat 1 10 0 2 1097 558 299 0 7 chr11 67199867 67200015 -54643841 + B1_Mur2 SINE Alu 1 147 -2 2 1097 183 106 41 41 chr11 67200015 67200053 -54643803 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2 1097 271 304 190 9 chr11 67200127 67200243 -54643613 - MIRb SINE MIR -75 193 57 2 1097 399 246 0 0 chr11 67201078 67201257 -54642599 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1097 357 297 48 94 chr11 67201412 67201725 -54642131 + MTEb LTR MaLR 51 375 -4 2 1097 312 276 74 28 chr11 67201732 67201840 -54642016 + MLT1A0 LTR MaLR 229 341 -24 2 1097 211 340 97 0 chr11 67201883 67201986 -54641870 + L2a LINE L2 3313 3425 -1 2 1097 304 326 11 0 chr11 67202781 67202876 -54640980 - L2a LINE L2 -6 3420 3325 2 1097 333 206 16 0 chr11 67202996 67203059 -54640797 + ID2 SINE ID 20 83 0 2 1097 261 284 12 24 chr11 67202998 67203081 -54640775 + ID_B1 SINE B4 23 104 -120 2 1097 418 237 25 50 chr11 67203211 67203331 -54640525 + PB1D10 SINE Alu 1 117 0 2 1097 304 312 107 65 chr11 67203496 67203621 -54640235 - MLT1L LTR MaLR -164 446 321 2 1097 1330 247 16 41 chr11 67203621 67204009 -54639847 - MTE2b LTR MaLR 0 379 2 2 1097 304 312 107 65 chr11 67204009 67204099 -54639757 - MLT1L LTR MaLR -290 320 222 2 1097 205 267 0 0 chr11 67205130 67205175 -54638681 + (CCTA)n Simple_repeat Simple_repeat 1 45 0 2 1097 839 164 6 0 chr11 67205176 67205347 -54638509 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 2 1097 343 291 16 0 chr11 67205366 67205493 -54638363 + (TCCA)n Simple_repeat Simple_repeat 4 132 0 2 1097 188 0 74 0 chr11 67205586 67205613 -54638243 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1097 560 200 142 0 chr11 67205613 67205733 -54638123 - B1_Mur1 SINE Alu -11 138 2 2 1097 353 378 58 50 chr11 67206333 67206695 -54637161 - L2c LINE L2 -16 3371 3007 2 1097 271 231 0 37 chr11 67206891 67206945 -54636911 + B1F SINE Alu 29 80 -69 2 1097 396 0 0 0 chr11 67206946 67206990 -54636866 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1097 187 425 30 45 chr11 67207697 67207830 -54636026 + MIRc SINE MIR 18 148 -120 2 1097 5061 122 48 78 chr11 67208673 67209602 -54634254 - RMER17A2 LTR ERVK -4 902 1 2 1097 360 185 40 89 chr11 67209693 67209794 -54634062 - MTE2a LTR MaLR -17 362 267 2 1097 213 147 28 56 chr11 67211481 67211553 -54632303 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 2 1097 33 56 0 0 chr11 67211564 67211618 -54632238 + AT_rich Low_complexity Low_complexity 1 54 0 2 1097 493 212 82 0 chr11 67211785 67211889 -54631967 + PB1D10 SINE Alu 1 114 -3 2 1097 337 253 0 0 chr11 67212052 67212133 -54631723 - ID4_ SINE ID -60 92 12 2 1097 332 331 51 34 chr11 67212165 67212343 -54631513 - L3 LINE CR1 -773 3716 3536 2 1097 1331 92 22 5 chr11 67212618 67212803 -54631053 + B2_Mm2 SINE B2 1 188 -7 2 1097 276 338 0 0 chr11 67212916 67212984 -54630872 + PB1D10 SINE Alu 1 68 -49 2 1097 287 255 153 0 chr11 67213099 67213197 -54630659 - PB1D7 SINE Alu -3 117 5 2 1097 344 220 49 20 chr11 67213571 67213673 -54630183 + MLT1B LTR MaLR 72 176 -214 2 1097 624 289 55 41 chr11 67214347 67214567 -54629289 - ID_B1 SINE B4 0 224 2 2 1097 196 381 21 0 chr11 67214887 67214984 -54628872 - L2a LINE L2 0 3426 3328 2 1097 217 308 115 0 chr11 67215066 67215144 -54628712 - MIRb SINE MIR 0 268 182 2 1097 3154 51 15 20 chr11 67215516 67215917 -54627939 - MTB LTR MaLR 0 400 2 2 1097 614 104 10 0 chr11 67216552 67216648 -54627208 + (GGA)n Simple_repeat Simple_repeat 1 97 0 2 1097 450 0 0 0 chr11 67216645 67216695 -54627161 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1097 570 280 84 0 chr11 67216698 67216841 -54627015 + ID_B1 SINE B4 3 157 -67 3 1097 237 329 13 0 chr11 67216849 67216928 -54626928 + RSINE1 SINE B4 3 82 -83 3 1097 1019 186 47 0 chr11 67216857 67217050 -54626806 + B3 SINE B2 11 212 -4 3 1097 832 232 20 35 chr11 67217208 67217405 -54626451 + B3A SINE B2 4 197 -1 3 1097 344 327 108 76 chr11 67217488 67217885 -54625971 + L1ME3B LINE L1 5647 6056 -184 3 1097 283 250 52 13 chr11 67217969 67218046 -54625810 + ID2 SINE ID 3 82 -1 3 1097 22 35 0 0 chr11 67218072 67218101 -54625755 + AT_rich Low_complexity Low_complexity 1 29 0 3 1097 1854 149 35 12 chr11 67218186 67218505 -54625351 - ORR1D1 LTR MaLR 0 374 49 3 1097 537 16 0 0 chr11 67218505 67218567 -54625289 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 1097 261 83 0 0 chr11 67218597 67218633 -54625223 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1097 510 236 40 8 chr11 67219717 67219841 -54624015 - B1F SINE Alu -12 137 10 3 1097 180 0 0 0 chr11 67219862 67219882 -54623974 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1097 441 160 254 36 chr11 67219885 67219995 -54623861 - B1_Mus2 SINE Alu -13 134 1 3 1097 431 256 115 42 chr11 67220225 67220423 -54623433 + MER3 DNA MER1_type 1 170 -2454 3 1097 451 158 14 208 chr11 67220506 67220650 -54623206 + B1_Mur1 SINE Alu 13 128 -21 3 1097 343 254 0 66 chr11 67221392 67221514 -54622342 + PB1D10 SINE Alu 3 116 -1 3 1097 197 374 9 27 chr11 67221941 67222051 -54621805 + MIRc SINE MIR 108 215 -53 3 1097 311 301 29 0 chr11 67222177 67222280 -54621576 + GA-rich Low_complexity Low_complexity 2 107 0 3 1097 1109 90 14 0 chr11 67222318 67222463 -54621393 + B1_Mus2 SINE Alu 1 147 0 3 1097 430 142 48 24 chr11 67223069 67223241 -54620615 + (TAGA)n Simple_repeat Simple_repeat 1 176 0 3 1097 273 328 124 71 chr11 67223247 67223457 -54620399 - MLT1K LTR MaLR -75 520 300 3 1097 1958 239 12 26 chr11 67223605 67224022 -54619834 + MTD LTR MaLR 1 411 -8 3 1097 483 317 59 27 chr11 67224209 67224465 -54619391 - L3 LINE CR1 -3401 1088 825 3 1097 332 273 30 20 chr11 67224699 67224710 -54619146 + MT2B LTR ERVL 155 166 -435 3 1097 545 212 54 0 chr11 67224710 67224838 -54619018 + B1F SINE Alu 2 143 -6 3 1097 257 270 103 103 chr11 67224800 67224863 -54618993 + B4A SINE B4 83 246 -46 3 1097 875 283 37 125 chr11 67225037 67225187 -54618669 + MLT1A LTR MaLR 2 151 -223 3 1097 822 163 0 98 chr11 67225187 67225350 -54618506 + B1_Mur1 SINE Alu 1 147 -2 3 1097 875 272 66 48 chr11 67225350 67225600 -54618256 + MLT1A LTR MaLR 152 408 0 3 1097 786 259 63 26 chr11 67225766 67226035 -54617821 + B4A SINE B4 2 280 -12 3 1097 521 310 60 75 chr11 67226230 67226594 -54617262 - ORR1E LTR MaLR -22 348 1 3 1097 295 353 39 0 chr11 67226594 67226694 -54617162 - MLT1J LTR MaLR -326 186 83 3 1097 461 306 41 20 chr11 67227005 67227152 -54616704 - MER45A DNA Tip100 -24 154 5 3 1097 255 322 41 25 chr11 67227259 67227380 -54616476 - RMER15 LTR ERVL -117 458 336 3 1097 484 253 79 13 chr11 67227948 67228100 -54615756 - L3 LINE CR1 -88 4401 4240 3 1097 256 264 65 21 chr11 67228275 67228368 -54615488 + Charlie8 DNA MER1_type 73 169 -2259 3 1097 241 348 67 82 chr11 67228525 67228794 -54615062 + MLT1N2 LTR MaLR 158 422 -90 3 1097 491 271 14 72 chr11 67228938 67229161 -54614695 + L1MB4 LINE L1 4926 5135 -1011 3 1097 1197 77 23 35 chr11 67229202 67229376 -54614480 + B2_Mm2 SINE B2 1 172 -23 3 1097 360 0 0 0 chr11 67229376 67229416 -54614440 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1097 579 211 63 70 chr11 67229416 67229574 -54614282 + B3A SINE B2 37 198 0 3 1097 1397 264 92 22 chr11 67229601 67230278 -54613578 + L1MB4 LINE L1 5160 5888 -292 3 1097 546 298 49 7 chr11 67230369 67230511 -54613345 + B3 SINE B2 1 148 -68 3 1097 459 0 0 0 chr11 67230511 67230562 -54613294 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1097 502 296 221 48 chr11 67230670 67231139 -54612717 + L1MB8 LINE L1 5472 6021 -157 3 1097 921 225 35 5 chr11 67231194 67231395 -54612461 - B3 SINE B2 -6 210 4 3 1097 1044 324 88 29 chr11 67231424 67231911 -54611945 + MT2A LTR ERVL 1 516 -17 3 1097 311 250 148 0 chr11 67231918 67232006 -54611850 - PB1D9 SINE Alu -15 105 5 3 1097 281 302 128 45 chr11 67232229 67232385 -54611471 + MLT1N2 LTR MaLR 387 555 -7 3 1097 714 261 132 34 chr11 67232469 67232735 -54611121 + B4A SINE B4 1 292 0 3 1097 822 93 0 0 chr11 67232767 67232906 -54610950 + (TC)n Simple_repeat Simple_repeat 1 139 0 3 1097 21 57 0 0 chr11 67233232 67233267 -54610589 + AT_rich Low_complexity Low_complexity 1 35 0 3 1097 181 308 162 9 chr11 67233388 67233493 -54610363 + MIRb SINE MIR 128 248 -20 3 1097 232 300 79 8 chr11 67233660 67233793 -54610063 - MIR SINE MIR -1 267 117 3 1097 271 183 73 32 chr11 67234514 67234638 -54609218 + (CA)n Simple_repeat Simple_repeat 2 130 0 3 1097 384 22 0 0 chr11 67234665 67234710 -54609146 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1097 365 247 29 40 chr11 67234739 67234912 -54608944 + (CA)n Simple_repeat Simple_repeat 1 171 0 3 1097 450 0 0 0 chr11 67235614 67235664 -54608192 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1097 689 276 0 7 chr11 67235678 67235813 -54608043 - RSINE1 SINE B4 -29 136 3 3 1097 371 180 180 0 chr11 67235899 67235988 -54607868 - B3A SINE B2 -92 106 2 3 1097 919 212 63 72 chr11 67235998 67236221 -54607635 - B4 SINE B4 -70 222 2 3 1097 682 217 85 15 chr11 67236399 67236600 -54607256 - B3 SINE B2 -1 215 1 3 1097 437 272 0 10 chr11 67236645 67236749 -54607107 + PB1 SINE Alu 23 125 -2 3 1097 330 362 16 0 chr11 67237314 67237441 -54606415 + LTR90B LTR LTR 1 129 -667 3 1097 275 289 165 0 chr11 67237711 67237808 -54606048 + PB1D10 SINE Alu 5 117 0 3 1097 1620 152 138 77 chr11 67237830 67238199 -54605657 + ORR1B2 LTR MaLR 1 370 -14 3 1097 488 335 89 60 chr11 67238221 67238300 -54605556 + ORR1E LTR MaLR 34 219 -140 3 1097 723 169 272 17 chr11 67238300 67238480 -54605376 - MT2A LTR ERVL -307 226 1 3 1097 488 335 89 60 chr11 67238480 67238536 -54605320 + ORR1E LTR MaLR 220 357 -2 3 1097 352 316 18 0 chr11 67238538 67238652 -54605204 + ID_B1 SINE B4 109 224 0 3 1097 320 250 107 49 chr11 67238741 67238863 -54604993 - MLT1F LTR MaLR -49 499 371 3 1097 779 285 15 0 chr11 67239556 67239756 -54604100 - B3 SINE B2 -13 203 1 3 137 842 295 121 63 chr11 67239791 67240106 -54603750 + Tigger7 DNA MER2_type 118 450 -2041 3 1098 666 250 96 10 chr11 67240790 67240988 -54602868 + B3 SINE B2 1 215 -1 3 1098 233 282 223 0 chr11 67240993 67241096 -54602760 + L2 LINE L2 2803 2928 -491 3 1098 429 333 68 29 chr11 67241223 67241504 -54602352 + B4A SINE B4 1 292 0 3 1098 226 266 115 35 chr11 67241595 67241708 -54602148 - Charlie8 DNA MER1_type -2280 148 27 3 1098 518 332 58 5 chr11 67242367 67242555 -54601301 + MLT1A0 LTR MaLR 166 363 -2 3 1098 1243 235 44 113 chr11 67242623 67242889 -54600967 - MTE2b LTR MaLR 0 379 113 3 1098 886 225 44 29 chr11 67242889 67243055 -54600801 + B3 SINE B2 3 173 -43 3 1098 432 0 0 0 chr11 67243055 67243103 -54600753 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1098 886 225 44 29 chr11 67243103 67243142 -54600714 + B3 SINE B2 174 211 -5 3 1098 1243 235 44 113 chr11 67243142 67243282 -54600574 - MTE2b LTR MaLR -267 112 1 3 1098 214 167 41 20 chr11 67243778 67243827 -54600029 + PB1D10 SINE Alu 68 117 0 3 1098 1124 66 0 0 chr11 67243831 67243967 -54599889 + B1_Mus1 SINE Alu 1 136 -12 3 1098 997 116 6 6 chr11 67243985 67244150 -54599706 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 3 1098 386 282 35 0 chr11 67244164 67244249 -54599607 + ID_B1 SINE B4 80 167 -57 3 1098 421 242 63 0 chr11 67244180 67244275 -54599581 + PB1D10 SINE Alu 15 115 -2 3 1098 203 61 0 83 chr11 67244632 67244668 -54599188 + (CCCCCG)n Simple_repeat Simple_repeat 2 34 0 3 1098 410 312 0 0 chr11 67245081 67245190 -54598666 + PB1D10 SINE Alu 1 109 -8 3 1098 726 219 129 12 chr11 67245482 67245653 -54598203 + B3 SINE B2 1 191 -25 3 1098 278 300 25 83 chr11 67245663 67245783 -54598073 - PB1D7 SINE Alu -2 118 6 3 1098 231 146 0 0 chr11 67245882 67245923 -54597933 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 3 1098 222 275 212 0 chr11 67246013 67246093 -54597763 - BC1_Mm scRNA scRNA -54 98 2 3 1098 306 261 76 0 chr11 67246102 67246194 -54597662 - L1MEf LINE L1 -4105 2095 1997 3 1098 253 275 0 42 chr11 67246246 67246318 -54597538 - PB1D10 SINE Alu -1 116 48 3 1098 319 270 0 0 chr11 67246338 67246412 -54597444 + B4A SINE B4 1 74 -218 3 1098 285 214 0 0 chr11 67246469 67246525 -54597331 + B4A SINE B4 235 290 -2 3 1098 480 18 0 0 chr11 67246569 67246626 -54597230 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1098 259 433 0 6 chr11 67246844 67247009 -54596847 + MLT1D LTR MaLR 341 504 -1 3 1098 777 251 15 35 chr11 67247696 67247894 -54595962 + B3A SINE B2 2 195 -3 3 1098 593 284 0 29 chr11 67247914 67248052 -54595804 + B1_Mur1 SINE Alu 9 142 -7 3 1098 253 81 27 0 chr11 67248065 67248102 -54595754 + B3A SINE B2 5 42 -156 3 1098 797 116 0 0 chr11 67248102 67248183 -54595673 + B1_Mus1 SINE Alu 2 82 -66 3 1098 586 308 66 47 chr11 67248183 67248220 -54595636 + B3 SINE B2 2 31 -185 3 1098 432 0 0 0 chr11 67248220 67248268 -54595588 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1098 586 308 66 47 chr11 67248268 67248441 -54595415 + B3 SINE B2 32 216 0 3 1098 23 86 0 0 chr11 67248450 67248508 -54595348 + AT_rich Low_complexity Low_complexity 1 58 0 3 1098 322 256 54 62 chr11 67248632 67248761 -54595095 + MLT1K LTR MaLR 2 129 -279 3 1098 1452 133 4 9 chr11 67248783 67249010 -54594846 + URR1A DNA MER1_type 1 226 0 3 1098 263 194 0 31 chr11 67249493 67249557 -54594299 + MLT1K LTR MaLR 345 406 -2 3 1098 587 39 13 0 chr11 67249598 67249676 -54594180 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 1098 254 385 0 0 chr11 67249698 67249776 -54594080 - ID4_ SINE ID -3 80 3 4 1098 383 248 164 9 chr11 67249776 67249886 -54593970 - B1F SINE Alu 0 149 23 4 1098 369 280 86 57 chr11 67249886 67249916 -54593940 - ID_B1 SINE B4 -3 221 78 4 1098 591 112 48 0 chr11 67250012 67250137 -54593719 + CT-rich Low_complexity Low_complexity 2 132 0 4 1098 808 268 14 6 chr11 67250269 67250478 -54593378 + B3 SINE B2 1 216 0 4 1098 822 189 0 13 chr11 67250489 67250639 -54593217 + B1_Mur2 SINE Alu 1 148 -1 4 1098 485 307 21 14 chr11 67250701 67250843 -54593013 + B1F SINE Alu 1 143 -6 4 1098 607 196 71 0 chr11 67250845 67250957 -54592899 - B1_Mur1 SINE Alu -6 143 24 4 1098 481 273 118 54 chr11 67250972 67251158 -54592698 - B3A SINE B2 0 198 1 4 1098 259 304 14 0 chr11 67251189 67251258 -54592598 + ID2 SINE ID 14 83 0 4 1098 386 297 122 16 chr11 67251365 67251553 -54592303 + MLT1K LTR MaLR 384 591 -4 3 1098 483 259 249 0 chr11 67251764 67251953 -54591903 + MLT1F1 LTR MaLR 1 236 -312 4 1098 1588 231 54 32 chr11 67251960 67252331 -54591525 - MTE2b LTR MaLR 0 379 1 4 1098 666 270 36 26 chr11 67252361 67252555 -54591301 + MLT1F1 LTR MaLR 310 505 -64 4 1098 230 333 161 0 chr11 67252756 67252837 -54591019 - B1F SINE Alu -52 97 4 4 1098 459 219 60 45 chr11 67252880 67253014 -54590842 - B1F SINE Alu -13 136 1 4 1098 255 344 0 0 chr11 67253528 67253592 -54590264 - MER5B DNA MER1_type -17 161 98 4 1098 1317 147 4 47 chr11 67253615 67253850 -54590006 - URR1B DNA MER1_type 0 225 1 4 1098 406 342 8 16 chr11 67254067 67254189 -54589667 - ID_B1 SINE B4 -86 138 18 4 1098 269 288 0 0 chr11 67255059 67255125 -54588731 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 4 1098 241 263 35 0 chr11 67255222 67255279 -54588577 - MIRc SINE MIR -88 180 122 4 1098 225 333 0 14 chr11 67255425 67255495 -54588361 - ID4 SINE ID -1 82 14 4 1098 1321 214 129 6 chr11 67256767 67257100 -54586756 + MTD LTR MaLR 35 408 -11 4 1098 1074 260 65 69 chr11 67257820 67258267 -54585589 + RMER5 LTR ERV1 70 514 -20 4 1098 276 53 0 0 chr11 67258267 67258305 -54585551 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 1098 219 36 0 0 chr11 67259340 67259368 -54584488 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1098 758 73 18 0 chr11 67259414 67259523 -54584333 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 4 1098 316 197 14 14 chr11 67259527 67259599 -54584257 - ID4_ SINE ID -10 73 2 4 1098 259 244 70 0 chr11 67260168 67260254 -54583602 - BC1_Mm scRNA scRNA -55 97 6 4 1098 497 258 125 0 chr11 67260490 67260618 -54583238 - ID_B1 SINE B4 -1 223 80 4 1098 354 98 0 0 chr11 67260807 67260858 -54582998 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 4 1098 1893 210 77 3 chr11 67261190 67261567 -54582289 + MTD LTR MaLR 1 405 -14 4 1098 320 315 113 33 chr11 67261672 67261823 -54582033 + RSINE1 SINE B4 3 165 0 4 1098 21 36 0 0 chr11 67261835 67261863 -54581993 + AT_rich Low_complexity Low_complexity 1 28 0 4 1098 271 258 40 24 chr11 67261863 67261960 -54581896 + PB1D10 SINE Alu 1 95 -32 4 1098 249 336 71 0 chr11 67262204 67262317 -54581539 - L1M5 LINE L1 -471 5769 5649 4 1098 2928 133 48 38 chr11 67262820 67263343 -54580513 - RLTR12B LTR ERVK 0 528 1 4 1098 465 219 8 116 chr11 67263420 67263443 -54580413 - PB1D9 SINE Alu -5 115 99 4 1098 401 0 20 0 chr11 67263443 67263492 -54580364 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1098 321 26 0 0 chr11 67263492 67263529 -54580327 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1098 543 53 0 0 chr11 67263529 67263603 -54580253 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1098 509 200 10 78 chr11 67263603 67263706 -54580150 - B1_Mus2 SINE Alu -51 96 1 4 1098 599 273 48 14 chr11 67263740 67263885 -54579971 - U1 snRNA snRNA -2 163 14 4 1098 492 266 117 14 chr11 67264030 67264175 -54579681 - RSINE1 SINE B4 -4 161 2 4 1098 558 0 0 0 chr11 67264411 67264473 -54579383 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1098 454 257 10 19 chr11 67264510 67264613 -54579243 - PB1D7 SINE Alu -8 112 11 4 1098 183 80 0 0 chr11 67264643 67264668 -54579188 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4 1098 231 36 0 0 chr11 67264675 67264703 -54579153 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1098 529 257 34 14 chr11 67264807 67264953 -54578903 - B1F SINE Alu 0 149 1 4 1098 180 0 0 0 chr11 67265100 67265120 -54578736 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1098 822 253 151 13 chr11 67265120 67265432 -54578424 - L1MB7 LINE L1 -43 6141 5787 4 1098 292 392 19 0 chr11 67265630 67265737 -54578119 - PB1D10 SINE Alu -2 115 7 4 1098 575 304 7 7 chr11 67265664 67265810 -54578046 - ID_B1 SINE B4 -64 160 15 4 1098 269 227 38 51 chr11 67265849 67265928 -54577928 - PB1D7 SINE Alu 0 120 43 4 1098 200 160 0 57 chr11 67266069 67266122 -54577734 + C-rich Low_complexity Low_complexity 3 52 0 4 1098 312 244 39 0 chr11 67266245 67266323 -54577533 - ID4_ SINE ID -1 82 2 4 1098 214 389 48 0 chr11 67266347 67266473 -54577383 + MIRc SINE MIR 3 134 -134 4 1098 576 266 0 8 chr11 67266757 67266886 -54576970 - B1F SINE Alu 0 149 22 4 1098 489 273 34 48 chr11 67266886 67266903 -54576953 - ID_B1 SINE B4 0 224 81 4 1098 491 202 39 39 chr11 67267347 67267450 -54576406 + B1_Mur1 SINE Alu 39 141 -8 4 1098 252 280 0 0 chr11 67267617 67267667 -54576189 + C-rich Low_complexity Low_complexity 6 55 0 4 1098 25 75 0 0 chr11 67268798 67268851 -54575005 + GC_rich Low_complexity Low_complexity 1 53 0 4 1098 387 265 49 0 chr11 67270954 67271067 -54572789 - B1F2 SINE Alu -32 116 2 4 1098 385 272 208 41 chr11 67273208 67273494 -54570362 + MLT1A1 LTR MaLR 18 405 -3 4 1098 798 171 7 14 chr11 67274000 67274148 -54569708 - B1_Mus1 SINE Alu -1 147 1 4 1098 264 325 108 42 chr11 67274148 67274302 -54569554 - MLT1H LTR MaLR -301 248 79 4 1098 217 333 16 0 chr11 67274502 67274565 -54569291 - MIRb SINE MIR -183 85 22 4 1098 295 203 61 30 chr11 67276040 67276106 -54567750 - MER58D DNA MER1_type -6 380 313 4 1098 242 359 16 57 chr11 67276142 67276266 -54567590 - MER58A DNA MER1_type -58 166 48 4 1098 424 242 81 0 chr11 67276250 67276349 -54567507 - ID_B1 SINE B4 -2 222 116 4 1098 443 333 0 0 chr11 67276347 67276449 -54567407 - B1F SINE Alu -46 103 2 4 1098 26 0 0 0 chr11 67276529 67276555 -54567301 + AT_rich Low_complexity Low_complexity 1 26 0 4 1098 545 291 0 0 chr11 67276562 67276696 -54567160 + B3A SINE B2 3 136 -62 4 1098 480 18 0 0 chr11 67276716 67276773 -54567083 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1098 452 311 15 15 chr11 67276908 67277042 -54566814 - B1F1 SINE Alu -15 134 1 4 1098 638 206 69 0 chr11 67277094 67277225 -54566631 - B1F SINE Alu -2 147 8 4 1098 194 291 45 80 chr11 67277765 67277877 -54565979 - L4 LINE RTE -19 2010 1903 4 1098 294 306 71 40 chr11 67278019 67278145 -54565711 - MLT1I LTR MaLR -7 404 275 4 1098 368 279 76 70 chr11 67278383 67278541 -54565315 + LTR48 LTR ERV1 484 642 -145 4 1098 568 307 25 12 chr11 67278869 67279118 -54564738 + B4A SINE B4 6 288 -4 4 1098 441 284 127 57 chr11 67279847 67280075 -54563781 - MER21B LTR ERV1 -27 836 593 4 1098 483 60 0 0 chr11 67281535 67281602 -54562254 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 4 1098 555 16 0 0 chr11 67281602 67281666 -54562190 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1098 234 310 0 0 chr11 67282133 67282204 -54561652 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1098 534 254 7 34 chr11 67282302 67282449 -54561407 - ID_B1 SINE B4 0 224 82 4 1098 290 293 187 19 chr11 67282924 67282972 -54560884 - L1MB7 LINE L1 -74 6104 6053 4 1098 1593 141 18 0 chr11 67282972 67283249 -54560607 - Lx2A1 LINE L1 -3 7005 6724 4 1098 307 255 212 19 chr11 67283249 67283409 -54560447 - L1MB7 LINE L1 -133 6051 5861 4 1098 6302 176 49 6 chr11 67283410 67284603 -54559253 - Lx9 LINE L1 0 7644 6401 4 1098 712 261 36 22 chr11 67284684 67284936 -54558920 - L1MB7 LINE L1 -367 5875 5601 4 1098 476 236 0 0 chr11 67285096 67285185 -54558671 - ID_B1 SINE B4 -8 216 128 4 1098 327 160 0 0 chr11 67285190 67285265 -54558591 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1098 245 265 60 12 chr11 67285473 67285557 -54558299 - MER21B LTR ERV1 -132 731 644 4 1098 771 275 101 35 chr11 67285726 67286012 -54557844 - MER21B LTR ERV1 -518 345 41 4 1098 695 238 0 15 chr11 67287613 67287745 -54556111 - ID_B1 SINE B4 -15 209 80 4 1098 273 98 0 0 chr11 67287749 67287790 -54556066 + (TCC)n Simple_repeat Simple_repeat 2 42 0 4 1098 230 297 40 26 chr11 67287793 67287869 -54555987 - PB1D10 SINE Alu 0 117 41 4 1098 494 341 54 79 chr11 67288596 67288949 -54554907 - ORR1E LTR MaLR -15 344 1 4 1098 203 308 0 71 chr11 67289735 67289819 -54554037 + MIRm SINE MIR 96 173 -103 4 1098 216 254 18 26 chr11 67290209 67290322 -54553534 + CT-rich Low_complexity Low_complexity 3 114 0 4 1098 605 220 0 18 chr11 67290331 67290442 -54553414 - PB1D10 SINE Alu -6 111 3 4 1098 336 247 11 76 chr11 67290362 67290454 -54553402 - MT2B2 LTR ERVL -344 240 155 4 1098 278 303 29 0 chr11 67291112 67291217 -54552639 + CT-rich Low_complexity Low_complexity 1 108 0 4 1098 230 247 49 49 chr11 67291260 67291341 -54552515 + MTE2a LTR MaLR 281 361 -18 5 1098 809 235 73 51 chr11 67291953 67292215 -54551641 + MLT1B LTR MaLR 9 278 -112 5 1098 347 286 8 51 chr11 67292215 67292333 -54551523 + PB1D9 SINE Alu 1 113 -7 5 1098 809 235 73 51 chr11 67292333 67292344 -54551512 + MLT1B LTR MaLR 279 288 -102 5 1098 481 277 61 47 chr11 67292342 67292490 -54551366 + RSINE1 SINE B4 11 160 -5 5 1098 455 0 18 0 chr11 67292541 67292596 -54551260 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1098 435 330 0 0 chr11 67293567 67293676 -54550180 - PB1D10 SINE Alu -8 109 1 5 1098 367 308 121 44 chr11 67293688 67293936 -54549920 - L1MB5 LINE L1 -115 6059 5793 5 1098 697 282 16 21 chr11 67294809 67295001 -54548855 - ID_B1 SINE B4 -22 202 12 5 1098 337 264 75 83 chr11 67295030 67295150 -54548706 - PB1D7 SINE Alu -1 119 1 5 1098 263 298 114 29 chr11 67295245 67295386 -54548470 - MIRb SINE MIR -65 203 44 5 1098 396 88 0 0 chr11 67295532 67295589 -54548267 + (TCC)n Simple_repeat Simple_repeat 1 57 0 5 1098 519 271 0 8 chr11 67295601 67295727 -54548129 - B1F SINE Alu 0 120 2 5 1098 216 0 0 0 chr11 67296594 67296618 -54547238 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 5 1098 515 279 126 76 chr11 67296819 67297123 -54546733 - L2a LINE L2 -252 3174 2852 5 1098 804 210 28 0 chr11 67297123 67297266 -54546590 - B1_Mur1 SINE Alu -2 147 1 5 1098 515 279 142 89 chr11 67297266 67297702 -54546154 - L2a LINE L2 -568 2851 2397 5 1098 313 186 17 0 chr11 67297707 67297766 -54546090 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 5 1098 1791 69 35 28 chr11 67297806 67298060 -54545796 - L1Md_F2 LINE L1 0 6582 6327 5 1098 2775 37 0 3 chr11 67298060 67298381 -54545475 + L1Md_F2 LINE L1 6005 6325 -257 5 1098 243 282 133 39 chr11 67298417 67298620 -54545236 - L2a LINE L2 -1061 2358 2137 5 1098 229 174 21 21 chr11 67298936 67298983 -54544873 - B2_Mm2 SINE B2 -146 49 3 5 1098 764 250 80 0 chr11 67299427 67299615 -54544241 + B3 SINE B2 3 205 -11 5 1098 224 106 0 21 chr11 67299782 67299811 -54544045 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5 1098 601 253 19 25 chr11 67299811 67299973 -54543883 - RSINE1 SINE B4 -2 163 3 5 1098 224 106 0 21 chr11 67299973 67299991 -54543865 + (TTTA)n Simple_repeat Simple_repeat 3 19 0 5 1098 594 250 30 55 chr11 67300010 67300247 -54543609 + MER106A DNA MER1_type 2 232 -4 5 1098 417 86 0 0 chr11 67300486 67300544 -54543312 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1098 238 261 91 80 chr11 67300617 67300792 -54543064 + L1ME4a LINE L1 5948 6124 0 5 1098 597 217 47 0 chr11 67301247 67301376 -54542480 - B1F SINE Alu -8 141 7 5 1098 206 170 21 0 chr11 67301450 67301497 -54542359 + A-rich Low_complexity Low_complexity 2 49 0 5 1098 586 253 20 46 chr11 67302380 67302533 -54541323 - RSINE1 SINE B4 -2 163 15 5 1098 631 285 48 19 chr11 67302653 67302921 -54540935 - L1MB3 LINE L1 -25 6158 5883 5 1098 489 110 0 0 chr11 67302925 67302998 -54540858 + (ATG)n Simple_repeat Simple_repeat 2 74 0 5 1098 492 276 82 53 chr11 67302998 67303205 -54540651 - ID_B1 SINE B4 -8 216 4 5 1098 394 212 12 24 chr11 67303230 67303312 -54540544 + ID4_ SINE ID 3 83 0 5 1098 326 320 92 31 chr11 67304096 67304363 -54539493 + MLT1K LTR MaLR 225 539 -56 5 1098 387 56 0 0 chr11 67304363 67304417 -54539439 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1098 310 311 94 53 chr11 67304417 67304444 -54539412 + MLT1K LTR MaLR 540 568 -27 5 1098 283 358 43 2 chr11 67304599 67304736 -54539120 + MIRc SINE MIR 47 186 -22 5 1098 434 287 18 27 chr11 67304849 67304960 -54538896 - B3A SINE B2 -45 153 44 5 1098 243 241 35 35 chr11 67304966 67305052 -54538804 - L1ME3A LINE L1 -21 6152 6067 5 1098 259 250 36 0 chr11 67305111 67305167 -54538689 - B3A SINE B2 -140 58 1 5 1098 416 299 26 0 chr11 67305254 67305371 -54538485 - L1ME2z LINE L1 -3 6441 6322 5 1098 26 0 0 0 chr11 67305860 67305886 -54537970 + AT_rich Low_complexity Low_complexity 1 26 0 5 1098 3557 31 2 0 chr11 67305886 67306301 -54537555 - L1Md_T LINE L1 -1 6581 6166 5 1098 226 182 35 35 chr11 67306481 67306595 -54537261 + CT-rich Low_complexity Low_complexity 5 118 0 5 1098 348 43 0 0 chr11 67306613 67306659 -54537197 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1098 393 22 0 0 chr11 67306659 67306704 -54537152 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1098 555 259 36 22 chr11 67306722 67306860 -54536996 - B3A SINE B2 -58 140 1 5 1098 23 54 0 0 chr11 67306971 67307008 -54536848 + AT_rich Low_complexity Low_complexity 1 37 0 5 1098 338 97 0 46 chr11 67307106 67307133 -54536723 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1098 216 0 0 0 chr11 67307133 67307157 -54536699 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1098 338 97 0 46 chr11 67307157 67307194 -54536662 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1098 180 0 0 0 chr11 67307197 67307217 -54536639 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1098 249 197 0 0 chr11 67307254 67307330 -54536526 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1098 459 167 0 62 chr11 67307348 67307540 -54536316 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1098 213 94 0 0 chr11 67307556 67307588 -54536268 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1098 288 0 0 0 chr11 67307591 67307623 -54536233 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1098 276 30 0 0 chr11 67307623 67307655 -54536201 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1098 978 298 42 18 chr11 67307688 67308020 -54535836 - Lx8 LINE L1 -146 7327 6988 5 1098 2158 150 89 0 chr11 67310034 67310394 -54533462 + ORR1B1 LTR MaLR 1 392 -2 5 1098 684 167 25 0 chr11 67310394 67310514 -54533342 + ORR1B1-int LTR MaLR 3 125 -1384 5 1098 313 309 76 14 chr11 67310552 67310709 -54533147 + MIR SINE MIR 18 176 -100 5 1098 674 242 202 0 chr11 67311132 67311310 -54532546 - ID_B1 SINE B4 -9 215 2 5 1098 1042 235 39 108 chr11 67312066 67312244 -54531612 - ORR1E LTR MaLR -4 355 197 5 1098 1973 237 45 10 chr11 67312244 67312759 -54531097 - MT2A LTR ERVL 0 533 1 5 1098 1042 235 39 108 chr11 67312759 67312961 -54530895 - ORR1E LTR MaLR -163 196 2 5 1098 1192 247 42 17 chr11 67312983 67313271 -54530585 - ORR1E-int LTR MaLR -87 1493 1199 5 1098 1877 272 72 43 chr11 67313268 67313868 -54529988 - ORR1E-int LTR MaLR -948 632 16 5 1098 631 288 109 59 chr11 67313884 67314224 -54529632 - ORR1E LTR MaLR 0 359 3 5 1098 275 346 87 0 chr11 67314226 67314330 -54529526 - MER5A DNA MER1_type -73 116 4 5 1098 285 197 0 0 chr11 67314534 67314595 -54529261 + CT-rich Low_complexity Low_complexity 1 61 0 5 1098 436 228 0 0 chr11 67314607 67314686 -54529170 - ID4 SINE ID 0 83 5 5 1098 324 70 0 0 chr11 67314698 67314741 -54529115 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5 1098 210 198 45 34 chr11 67316053 67316142 -54527714 + (TATATG)n Simple_repeat Simple_repeat 5 94 0 5 1098 277 236 257 26 chr11 67316930 67317043 -54526813 - MLT1B LTR MaLR -67 323 185 5 1098 201 39 0 0 chr11 67317077 67317103 -54526753 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1098 280 246 0 62 chr11 67317117 67317182 -54526674 - B4A SINE B4 -6 286 226 5 1098 322 256 140 56 chr11 67317203 67317381 -54526475 - B3 SINE B2 -13 203 11 5 1098 537 244 29 37 chr11 67317247 67317383 -54526473 - RSINE1 SINE B4 -21 144 10 5 1098 284 304 72 0 chr11 67317414 67317483 -54526373 - ID4 SINE ID -6 77 4 5 1098 464 279 98 28 chr11 67317483 67317696 -54526160 - B4A SINE B4 -64 228 1 5 1098 461 206 43 78 chr11 67317761 67317877 -54525979 - MLT1B LTR MaLR -213 177 66 5 1098 820 274 55 47 chr11 67317877 67318130 -54525726 + B4A SINE B4 2 256 -36 5 1098 249 33 0 0 chr11 67318171 67318201 -54525655 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1098 396 0 0 0 chr11 67318280 67318324 -54525532 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1098 369 293 28 70 chr11 67318535 67318748 -54525108 - L1MC4 LINE L1 -4001 2214 2011 5 1098 472 169 8 30 chr11 67318828 67318962 -54524894 + (TG)n Simple_repeat Simple_repeat 2 132 0 5 1098 713 258 0 30 chr11 67318963 67319131 -54524725 - RSINE1 SINE B4 0 165 3 5 1098 318 300 58 70 chr11 67319160 67319332 -54524524 - MIRb SINE MIR -69 199 30 5 1098 2108 113 58 0 chr11 67319874 67320183 -54523673 + ORR1A2 LTR MaLR 1 327 0 5 1098 221 0 0 33 chr11 67320441 67320471 -54523385 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1098 1146 51 0 0 chr11 67320471 67320608 -54523248 - B1_Mus2 SINE Alu -9 138 2 5 1098 248 262 106 53 chr11 67320706 67320737 -54523119 - MLT2F LTR ERVL -503 160 124 5 1098 2113 125 48 0 chr11 67320737 67321049 -54522807 - ORR1A2 LTR MaLR 0 327 1 5 1098 248 262 106 53 chr11 67321049 67321130 -54522726 - MLT2F LTR ERVL -540 123 42 5 1098 216 97 0 0 chr11 67321854 67321885 -54521971 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1098 212 316 44 143 chr11 67321958 67322161 -54521695 + MIRc SINE MIR 16 198 -70 5 1098 419 345 141 10 chr11 67322297 67322610 -54521246 - L2a LINE L2 -1 3425 3072 5 1098 203 358 131 9 chr11 67322669 67323004 -54520852 - L2a LINE L2 -457 2962 2587 5 1098 180 0 0 0 chr11 67323628 67323648 -54520208 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 5 1098 254 29 0 28 chr11 67323652 67323688 -54520168 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1098 945 101 22 0 chr11 67323711 67323849 -54520007 - B1_Mus1 SINE Alu 0 148 8 5 1098 501 246 53 23 chr11 67323828 67323961 -54519895 - B1F SINE Alu -11 138 2 5 1098 2387 156 23 0 chr11 67324487 67324872 -54518984 + ORR1B1 LTR MaLR 1 394 0 5 1098 754 230 216 35 chr11 67324873 67325323 -54518533 + L1MA8 LINE L1 5647 6190 -101 5 1098 383 55 0 18 chr11 67325739 67325794 -54518062 + (TTAA)n Simple_repeat Simple_repeat 1 54 0 5 1098 411 209 74 28 chr11 67325800 67325908 -54517948 + PB1D10 SINE Alu 1 113 -4 5 1098 422 0 38 0 chr11 67326204 67326257 -54517599 + (TCTCTG)n Simple_repeat Simple_repeat 5 59 0 5 1098 192 77 0 0 chr11 67326266 67326292 -54517564 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1098 315 0 0 0 chr11 67326370 67326405 -54517451 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1098 1466 271 74 10 chr11 67326433 67326918 -54516938 - L1MB7 LINE L1 -347 5837 5322 5 1098 318 273 153 85 chr11 67326925 67326957 -54516899 - B2_Mm2 SINE B2 -7 188 157 5 1098 269 68 23 0 chr11 67326957 67327001 -54516855 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 5 1098 619 185 191 23 chr11 67327001 67327144 -54516712 - B3 SINE B2 -39 156 1 5 1098 765 190 0 0 chr11 67327192 67327313 -54516543 - B1_Mur1 SINE Alu -6 143 23 5 1098 239 259 106 111 chr11 67327195 67327421 -54516435 + YREP_Mm Unknown Unknown 186 410 -1402 6 1098 964 257 9 0 chr11 67327428 67327642 -54516214 + B3 SINE B2 1 216 0 6 1098 1432 80 0 11 chr11 67327642 67327831 -54516025 - B2_Mm2 SINE B2 -8 187 1 6 1098 345 241 164 7 chr11 67327889 67328035 -54515821 - L1MB7 LINE L1 -941 5205 5037 5 1098 273 29 0 0 chr11 67328058 67328092 -54515764 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1098 252 149 0 0 chr11 67328108 67328155 -54515701 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 6 1098 251 179 0 164 chr11 67328199 67328266 -54515590 - B3A SINE B2 -160 56 1 6 1098 617 200 138 0 chr11 67328271 67328416 -54515440 - L1MB7 LINE L1 -1108 5038 4874 5 1098 239 191 48 0 chr11 67330368 67330410 -54513446 - MIR SINE MIR -170 92 49 6 1098 393 22 0 0 chr11 67330572 67330618 -54513238 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1098 861 246 43 19 chr11 67331362 67331573 -54512283 - B3 SINE B2 0 216 1 6 1098 349 261 75 21 chr11 67331600 67331694 -54512162 + ID_B1 SINE B4 78 176 -48 6 1098 419 262 81 2 chr11 67331612 67331714 -54512142 + PB1D10 SINE Alu 7 116 -33 6 1098 305 308 0 25 chr11 67333238 67333318 -54510538 + ID4 SINE ID 1 78 -5 6 1098 238 371 31 25 chr11 67333441 67333604 -54510252 + MER5A DNA MER1_type 4 167 -22 6 1098 421 315 137 13 chr11 67334871 67335042 -54508814 - MIR SINE MIR -36 226 47 6 1098 492 273 45 90 chr11 67335052 67335253 -54508603 - B3A SINE B2 -1 194 3 6 1098 744 234 32 13 chr11 67335446 67335473 -54508383 - RSINE1 SINE B4 -4 161 135 6 1098 480 35 0 0 chr11 67335473 67335531 -54508325 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1098 744 234 32 13 chr11 67335531 67335659 -54508197 - RSINE1 SINE B4 -31 134 3 6 1098 843 161 17 6 chr11 67336921 67337096 -54506760 + C-rich Low_complexity Low_complexity 3 179 0 6 1098 286 143 0 0 chr11 67337096 67337138 -54506718 + (TTCCC)n Simple_repeat Simple_repeat 4 45 0 6 1098 216 200 0 0 chr11 67337991 67338036 -54505820 + CT-rich Low_complexity Low_complexity 1 45 0 6 1098 443 181 160 0 chr11 67338238 67338332 -54505524 - B1_Mur1 SINE Alu -1 148 40 6 1098 189 147 0 0 chr11 67338375 67338409 -54505447 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1098 213 346 47 0 chr11 67338470 67338577 -54505279 + L2 LINE L2 2797 2908 -511 6 1098 628 177 73 0 chr11 67338586 67338709 -54505147 + MER2 DNA MER2_type 93 224 -121 6 1098 288 240 271 0 chr11 67338709 67338805 -54505051 + RSINE1 SINE B4 3 124 -41 6 1098 456 99 0 0 chr11 67338807 67338878 -54504978 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1098 297 0 0 0 chr11 67338879 67338912 -54504944 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1098 548 236 186 27 chr11 67339021 67339167 -54504689 + B3 SINE B2 1 158 -58 6 1098 240 35 0 0 chr11 67339167 67339196 -54504660 + (CAGTA)n Simple_repeat Simple_repeat 3 31 0 6 1098 548 236 186 27 chr11 67339196 67339232 -54504624 + B3 SINE B2 159 211 -5 6 1098 288 0 0 0 chr11 67339256 67339288 -54504568 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1098 241 362 0 0 chr11 67339302 67339371 -54504485 + MER2 DNA MER2_type 274 342 -3 6 1098 378 278 46 9 chr11 67339371 67339451 -54504405 + Tigger7 DNA MER2_type 2397 2480 -11 6 1098 306 0 0 0 chr11 67340506 67340540 -54503316 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 6 1098 458 346 24 24 chr11 67341470 67341636 -54502220 - Tigger5 DNA MER2_type -2178 228 63 6 1098 419 35 18 0 chr11 67341689 67341746 -54502110 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 6 1098 557 279 7 33 chr11 67341806 67341958 -54501898 - B1F SINE Alu -1 148 1 6 1098 823 172 27 154 chr11 67342096 67342316 -54501540 - B3A SINE B2 -1 194 3 6 1098 646 253 108 1 chr11 67342327 67342521 -54501335 - B3A SINE B2 0 216 9 6 1098 757 230 7 0 chr11 67342547 67342558 -54501298 - B1_Mur2 SINE Alu 0 149 139 6 1098 636 14 0 0 chr11 67342558 67342631 -54501225 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1098 757 230 7 0 chr11 67342631 67342758 -54501098 - B1_Mur2 SINE Alu -11 138 11 6 1098 583 265 15 7 chr11 67342832 67342969 -54500887 - RSINE1 SINE B4 -22 143 6 6 1098 285 176 19 38 chr11 67343160 67343213 -54500643 - ID4 SINE ID -1 82 31 6 1098 351 292 39 77 chr11 67343187 67343317 -54500539 - ID_B1 SINE B4 -16 208 84 6 1098 429 54 0 0 chr11 67343456 67343512 -54500344 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 6 1098 271 322 35 1 chr11 67344267 67344386 -54499470 + Charlie5 DNA MER1_type 21 142 -2482 6 1098 607 265 7 33 chr11 67344449 67344601 -54499255 + B1_Mur2 SINE Alu 2 149 0 6 1098 34 0 0 0 chr11 67344601 67344635 -54499221 + AT_rich Low_complexity Low_complexity 1 34 0 6 1098 426 160 53 0 chr11 67344635 67344710 -54499146 - ID_B1 SINE B4 -10 214 136 6 1098 613 236 99 36 chr11 67344797 67345017 -54498839 - MLT1D LTR MaLR -34 471 168 6 1098 304 280 0 0 chr11 67345059 67345134 -54498722 - ID4_ SINE ID -7 76 2 6 1098 231 214 0 0 chr11 67345235 67345291 -54498565 + A-rich Low_complexity Low_complexity 1 56 0 6 1098 587 277 20 20 chr11 67345324 67345475 -54498381 + ID_B1 SINE B4 73 223 -1 6 1098 196 158 51 26 chr11 67345605 67345644 -54498212 - MER5A DNA MER1_type 0 189 150 6 1098 488 307 120 8 chr11 67346428 67346687 -54497169 - L2b LINE L2 -144 3282 2992 6 1098 474 327 6 6 chr11 67346694 67346854 -54497002 + MER3 DNA MER1_type 8 167 -42 6 1098 680 200 190 22 chr11 67346980 67347164 -54496692 - B3 SINE B2 -1 215 1 6 1098 498 33 0 0 chr11 67347239 67347299 -54496557 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1098 226 229 97 28 chr11 67347318 67347390 -54496466 - PB1 SINE Alu -3 124 48 6 1098 261 135 0 0 chr11 67347425 67347477 -54496379 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1098 348 285 206 48 chr11 67347512 67347719 -54496137 - B4A SINE B4 0 292 53 6 1098 421 256 0 0 chr11 67347704 67347794 -54496062 - ID_B1 SINE B4 -52 172 83 6 1098 192 304 249 45 chr11 67347835 67348065 -54495791 - L2b LINE L2 -945 2474 2190 6 1098 790 70 287 0 chr11 67348065 67348180 -54495676 + B1_Mus1 SINE Alu 1 148 0 6 1098 192 304 249 45 chr11 67348180 67348479 -54495377 - L2b LINE L2 -1230 2189 1837 6 1098 275 250 101 11 chr11 67349126 67349215 -54494641 - MER5B DNA MER1_type -79 99 3 6 1098 194 254 17 0 chr11 67349226 67349285 -54494571 - L2b LINE L2 -2500 919 860 6 1098 413 320 16 16 chr11 67349298 67349422 -54494434 - FordPrefect_a DNA Tip100 -48 460 337 6 1098 227 338 0 0 chr11 67349889 67349969 -54493887 + MLT1F2 LTR MaLR 1 80 -480 6 1098 238 346 50 43 chr11 67350189 67350328 -54493528 + MLT1F2 LTR MaLR 416 555 -5 6 1098 744 296 38 42 chr11 67350436 67350725 -54493131 - B4A SINE B4 -2 290 3 6 1098 219 201 13 99 chr11 67352825 67352851 -54491005 + B1_Mus2 SINE Alu 43 95 -52 6 1098 229 209 23 0 chr11 67352851 67352894 -54490962 + ID_B1 SINE B4 174 217 -7 6 1098 1727 240 48 30 chr11 67353658 67353671 -54490185 + MTD LTR MaLR 1 13 -406 6 1098 270 0 0 0 chr11 67353671 67353701 -54490155 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1098 1727 240 48 30 chr11 67353701 67354083 -54489773 + MTD LTR MaLR 14 402 -17 6 1098 750 147 0 0 chr11 67354517 67354646 -54489210 + (GGAA)n Simple_repeat Simple_repeat 2 130 0 6 1098 501 17 0 0 chr11 67355749 67355807 -54488049 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 6 1098 349 297 43 85 chr11 67355842 67356170 -54487686 + L1ME3B LINE L1 5701 6014 -226 6 1098 239 211 110 27 chr11 67356253 67356326 -54487530 + MT2B LTR ERVL 163 241 -360 6 1098 188 383 53 11 chr11 67356497 67356592 -54487264 - MIR SINE MIR -46 216 118 6 1098 528 342 32 0 chr11 67357531 67357689 -54486167 - RSINE1 SINE B4 -1 164 2 6 1098 235 293 69 57 chr11 67357875 67358034 -54485822 - L1MB5 LINE L1 -76 6098 5938 6 1098 260 294 35 12 chr11 67358305 67358391 -54485465 + MLT1A0 LTR MaLR 65 152 -213 6 1098 230 231 0 19 chr11 67359399 67359452 -54484404 + CT-rich Low_complexity Low_complexity 2 53 0 6 1098 561 156 16 8 chr11 67359651 67359673 -54484183 + polypyrimidine Low_complexity Low_complexity 102 124 0 6 1098 997 146 9 7 chr11 67359673 67359952 -54483904 + CT-rich Low_complexity Low_complexity 1 279 0 6 1098 350 246 197 15 chr11 67359952 67360084 -54483772 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1098 407 162 12 0 chr11 67361576 67361656 -54482200 + CT-rich Low_complexity Low_complexity 2 82 0 6 1098 286 237 0 17 chr11 67361662 67361722 -54482134 + polypyrimidine Low_complexity Low_complexity 4 62 0 6 1098 373 316 42 34 chr11 67362347 67362465 -54481391 - RSINE1 SINE B4 -42 123 5 6 1098 241 315 27 14 chr11 67363312 67363386 -54480470 + MIRb SINE MIR 6 80 -188 6 1098 373 273 0 13 chr11 67364472 67364550 -54479306 + PB1D10 SINE Alu 7 83 -34 6 1098 923 301 80 0 chr11 67364635 67364921 -54478935 - MER2 DNA MER2_type 0 345 37 6 1098 542 300 82 22 chr11 67365029 67365394 -54478462 - L1ME1 LINE L1 -233 5946 5560 6 1098 238 290 127 50 chr11 67365965 67366248 -54477608 - L1M5 LINE L1 -556 5684 5380 6 1098 380 299 47 95 chr11 67366584 67366732 -54477124 + B4 SINE B4 79 219 -73 6 1098 797 148 7 49 chr11 67366603 67366745 -54477111 + B1_Mur3 SINE Alu 14 149 0 6 1098 251 231 138 0 chr11 67366825 67366890 -54476966 - ID4 SINE ID -9 74 1 6 1098 278 280 44 53 chr11 67367186 67367299 -54476557 - B1F2 SINE Alu -1 148 37 6 1098 461 302 49 95 chr11 67367308 67367626 -54476230 + MLT2B5 LTR ERVL 20 350 -367 6 1098 715 256 74 88 chr11 67367375 67367671 -54476185 + MTEa LTR MaLR 58 349 -30 6 1098 552 42 0 0 chr11 67367762 67367833 -54476023 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1098 1650 274 67 31 chr11 67367862 67368394 -54475462 + ORR1E-int LTR MaLR 990 1610 -353 6 1098 554 351 17 22 chr11 67368394 67368607 -54475249 + ORR1E LTR MaLR 1 213 -157 6 1098 325 298 143 58 chr11 67369331 67369520 -54474336 - HAL1 LINE L1 -2266 241 37 6 1098 260 325 126 38 chr11 67369618 67369969 -54473887 - L1ME1 LINE L1 -1860 4286 3899 6 1098 396 0 0 0 chr11 67370179 67370223 -54473633 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1098 554 219 44 56 chr11 67370450 67370610 -54473246 - RSINE1 SINE B4 -5 160 3 6 137 243 325 47 41 chr11 67370877 67371047 -54472809 - L1ME1 LINE L1 -2579 3567 3397 6 1099 292 276 86 33 chr11 67371132 67371342 -54472514 + L1MEe LINE L1 551 771 -4083 7 1099 223 273 196 15 chr11 67373403 67373512 -54470344 - MIRb SINE MIR -157 119 1 7 1099 468 0 0 0 chr11 67373760 67373812 -54470044 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1099 212 0 36 0 chr11 67374581 67374609 -54469247 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 7 1099 425 304 29 68 chr11 67374753 67374958 -54468898 + MER113 DNA MER1_type 245 441 -80 7 1099 279 293 258 7 chr11 67375035 67375186 -54468670 + MIRb SINE MIR 44 232 -36 7 1099 713 286 0 0 chr11 67375454 67375601 -54468255 + RSINE1 SINE B4 2 148 -17 7 1099 1029 89 0 0 chr11 67375625 67375771 -54468085 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 7 1099 649 280 49 11 chr11 67375841 67376025 -54467831 + MER68 LTR ERVL 90 280 -283 7 1099 701 254 141 26 chr11 67376031 67376265 -54467591 + B4A SINE B4 11 271 -21 7 1099 685 328 19 67 chr11 67376297 67376611 -54467245 + MER68 LTR ERVL 263 561 -2 7 1099 345 273 130 83 chr11 67378133 67378184 -54465672 + MLT1D LTR MaLR 14 68 -437 7 1099 270 0 0 0 chr11 67378184 67378214 -54465642 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1099 345 273 130 83 chr11 67378214 67378378 -54465478 + MLT1D LTR MaLR 69 239 -266 7 1099 569 362 108 50 chr11 67378435 67378833 -54465023 - MLT1K LTR MaLR -15 580 160 7 1099 202 267 33 0 chr11 67379791 67379851 -54464005 + MIRb SINE MIR 161 222 -46 7 1099 327 49 0 0 chr11 67380185 67380226 -54463630 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1099 279 0 0 0 chr11 67380226 67380256 -54463600 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1099 766 252 164 67 chr11 67380409 67380761 -54463095 + MTD LTR MaLR 8 395 -5 7 1099 258 32 0 0 chr11 67381376 67381407 -54462449 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1099 340 279 229 56 chr11 67381558 67381846 -54462010 + MLT1D LTR MaLR 45 382 -123 7 1099 364 299 87 20 chr11 67383057 67383207 -54460649 - MER5A DNA MER1_type -18 171 12 7 1099 329 278 43 22 chr11 67383413 67383505 -54460351 - L1MD2 LINE L1 -223 6136 6043 7 1099 419 243 0 0 chr11 67383505 67383579 -54460277 + B1_Mur1 SINE Alu 63 136 -13 7 1099 184 310 0 17 chr11 67384206 67384265 -54459591 - MIRc SINE MIR -138 130 73 7 1099 376 263 42 0 chr11 67385990 67386085 -54457771 - PB1 SINE Alu 0 127 29 7 1099 396 287 32 24 chr11 67386095 67386220 -54457636 - PB1 SINE Alu 0 127 2 7 1099 253 276 0 0 chr11 67386240 67386298 -54457558 + CT-rich Low_complexity Low_complexity 1 58 0 7 1099 236 314 98 62 chr11 67386298 67386410 -54457446 - PB1D10 SINE Alu -1 116 1 7 1099 189 107 0 0 chr11 67387624 67387652 -54456204 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1099 540 0 0 0 chr11 67387652 67387711 -54456145 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1099 435 294 86 51 chr11 67387717 67387914 -54455942 + Charlie8 DNA MER1_type 62 265 -2163 7 1099 862 220 0 6 chr11 67388012 67388181 -54455675 - B3A SINE B2 -30 168 1 7 1099 306 312 71 89 chr11 67388258 67388623 -54455233 - MLT1A1 LTR MaLR 0 408 21 7 1099 748 183 8 22 chr11 67388886 67389020 -54454836 - B1_Mur4 SINE Alu -13 137 6 7 1099 329 231 7 140 chr11 67388917 67389053 -54454803 - MT2B LTR ERVL -343 258 141 7 1099 448 293 85 50 chr11 67389534 67389735 -54454121 - ID_B1 SINE B4 -15 209 2 7 1099 213 325 43 65 chr11 67390420 67390512 -54453344 + MIR SINE MIR 133 222 -40 7 1099 335 281 41 20 chr11 67391179 67391277 -54452579 - PB1D10 SINE Alu -17 100 1 7 1099 263 290 0 16 chr11 67391905 67391968 -54451888 + MIR3 SINE MIR 111 172 -36 7 1099 556 259 31 115 chr11 67392317 67392509 -54451347 - ID_B1 SINE B4 -46 178 3 7 1099 223 288 0 140 chr11 67392530 67392561 -54451295 - PB1D10 SINE Alu -1 116 37 7 1099 363 210 0 0 chr11 67392561 67392623 -54451233 - ID_B1 SINE B4 -45 179 118 7 1099 514 311 89 53 chr11 67393717 67393931 -54449925 + MER113A DNA MER1_type 2 235 -79 7 1099 239 343 0 0 chr11 67393931 67394001 -54449855 + ID2 SINE ID 3 72 -11 7 1099 489 115 0 0 chr11 67394001 67394079 -54449777 + (CTG)n Simple_repeat Simple_repeat 1 78 0 7 1099 514 311 89 53 chr11 67394079 67394165 -54449691 + MER113A DNA MER1_type 236 313 -1 7 1099 256 278 118 76 chr11 67394165 67394275 -54449581 + AmnSINE1 SINE SINE 78 193 -382 7 1099 306 250 0 0 chr11 67394202 67394266 -54449590 - RSINE1 SINE B4 -96 69 6 7 1099 198 71 0 0 chr11 67394455 67394483 -54449373 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1099 369 109 0 0 chr11 67396682 67396737 -54447119 + (CAT)n Simple_repeat Simple_repeat 2 56 0 7 1099 465 216 52 0 chr11 67396737 67396834 -54447022 - PB1D10 SINE Alu -13 104 3 7 1099 808 272 83 90 chr11 67397672 67398082 -54445774 - L1MB3 LINE L1 -7 6176 5749 7 1099 1189 261 17 54 chr11 67398082 67398378 -54445478 - B4A SINE B4 -3 289 5 7 1099 808 272 83 90 chr11 67398378 67398512 -54445344 - L1MB3 LINE L1 -435 5748 5636 7 1099 451 214 110 7 chr11 67398524 67398679 -54445177 - L1MB3 LINE L1 -721 5450 5280 7 1099 341 286 0 13 chr11 67398989 67399067 -54444789 + ID4 SINE ID 7 83 0 7 1099 266 359 43 51 chr11 67399104 67399242 -54444614 + RMER12 LTR ERVK 720 856 -466 7 1099 386 333 62 102 chr11 67399212 67399516 -54444340 - B4 SINE B4 0 292 1 7 1099 29 28 0 0 chr11 67400679 67400715 -54443141 + AT_rich Low_complexity Low_complexity 1 36 0 7 1099 280 310 11 11 chr11 67401325 67401413 -54442443 - MER5A1 DNA MER1_type -70 96 9 7 1099 331 309 0 50 chr11 67402071 67402170 -54441686 - MIR3 SINE MIR -37 171 78 7 1099 734 288 0 62 chr11 67402870 67403081 -54440775 - B3A SINE B2 0 198 1 7 1099 246 62 0 0 chr11 67403118 67403150 -54440706 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 7 1099 1159 70 0 0 chr11 67403151 67403293 -54440563 - B1_Mus1 SINE Alu -5 143 2 7 1099 22 0 0 0 chr11 67403296 67403318 -54440538 + AT_rich Low_complexity Low_complexity 1 22 0 7 1099 405 0 0 0 chr11 67403323 67403368 -54440488 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1099 441 0 0 0 chr11 67403368 67403416 -54440440 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1099 541 268 16 8 chr11 67403450 67403578 -54440278 - RSINE1 SINE B4 -23 142 14 7 1099 722 276 131 9 chr11 67403583 67403912 -54439944 - L1MA5 LINE L1 -9 6291 5923 7 1099 185 182 30 0 chr11 67404497 67404530 -54439326 - MIR SINE MIR -63 145 112 7 1099 230 254 15 31 chr11 67404954 67405019 -54438837 + MTE2a LTR MaLR 292 355 -24 7 1099 431 200 8 134 chr11 67406043 67406170 -54437686 - PB1D10 SINE Alu -2 115 5 7 1099 327 225 12 6 chr11 67406344 67406514 -54437342 + (TG)n Simple_repeat Simple_repeat 1 171 0 7 1099 666 140 0 0 chr11 67406579 67406693 -54437163 + (GA)n Simple_repeat Simple_repeat 1 114 0 7 1099 381 43 0 0 chr11 67406962 67407009 -54436847 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1099 1797 226 71 13 chr11 67407156 67407550 -54436306 - MTD LTR MaLR -2 417 1 7 1099 365 342 6 68 chr11 67407555 67407718 -54436138 - ID_B1 SINE B4 -70 154 2 7 1099 677 274 97 18 chr11 67407832 67408059 -54435797 - B4A SINE B4 -40 252 8 7 1099 468 342 68 104 chr11 67408167 67408349 -54435507 + MER2 DNA MER2_type 27 201 -144 7 1099 296 269 60 69 chr11 67408349 67408465 -54435391 - PB1D7 SINE Alu -3 117 3 7 1099 468 342 68 104 chr11 67408465 67408608 -54435248 + MER2 DNA MER2_type 202 340 -5 7 1099 532 205 0 41 chr11 67408748 67408870 -54434986 - PB1D10 SINE Alu 0 117 1 7 1099 390 240 0 0 chr11 67408903 67408978 -54434878 - PB1D10 SINE Alu 0 117 43 7 1099 285 29 0 0 chr11 67409022 67409056 -54434800 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 7 1099 572 189 26 35 chr11 67409530 67409645 -54434211 - PB1D10 SINE Alu 0 117 4 7 1099 713 225 21 0 chr11 67410734 67410876 -54432980 - B1F1 SINE Alu 0 149 5 7 1099 433 236 34 0 chr11 67411700 67411789 -54432067 - PB1D7 SINE Alu -13 107 16 7 1099 343 249 34 66 chr11 67411859 67412033 -54431823 + L1M5 LINE L1 5687 5860 -308 7 1099 2210 156 74 10 chr11 67412414 67412808 -54431048 - MTD LTR MaLR 0 419 1 7 1099 894 181 0 189 chr11 67413034 67413299 -54430557 - B3 SINE B2 0 216 2 7 1099 327 104 0 0 chr11 67413333 67413381 -54430475 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1099 565 293 95 42 chr11 67413414 67413823 -54430033 - L1MB8 LINE L1 -93 6085 5655 7 1099 186 208 0 0 chr11 67415031 67415079 -54428777 + CT-rich Low_complexity Low_complexity 4 51 0 7 1099 255 221 360 0 chr11 67415095 67415181 -54428675 - PB1D10 SINE Alu 0 117 1 7 1099 329 192 104 52 chr11 67415927 67416004 -54427852 - L1ME4a LINE L1 -29 6095 6015 7 1099 202 279 14 14 chr11 67417321 67417390 -54426466 + CT-rich Low_complexity Low_complexity 4 72 0 7 1099 588 254 14 35 chr11 67417391 67417534 -54426322 - B1F SINE Alu -5 144 5 7 1099 211 273 48 127 chr11 67417882 67418008 -54425848 + B1_Mus1 SINE Alu 14 129 -19 7 1099 213 146 0 0 chr11 67418436 67418484 -54425372 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 7 1099 847 169 0 0 chr11 67418567 67418697 -54425159 + B3 SINE B2 1 130 -86 7 1099 2127 161 7 58 chr11 67418731 67419147 -54424709 - RMER10B LTR ERVL -2 396 2 7 1099 26 30 0 0 chr11 67419160 67419193 -54424663 + AT_rich Low_complexity Low_complexity 1 33 0 7 1099 2466 50 0 0 chr11 67419367 67419692 -54424164 - L1Md_F2 LINE L1 0 6582 6265 7 1099 284 345 58 16 chr11 67419898 67420019 -54423837 - MER58B DNA MER1_type -3 338 213 7 1099 194 214 48 0 chr11 67420216 67420258 -54423598 - L2c LINE L2 -8 3379 3336 7 1099 237 65 0 0 chr11 67420341 67420372 -54423484 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1099 225 0 0 0 chr11 67420991 67421016 -54422840 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1099 737 277 90 40 chr11 67421041 67421319 -54422537 - MER2 DNA MER2_type -53 292 1 8 1099 405 0 0 0 chr11 67421778 67421823 -54422033 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1099 238 277 169 0 chr11 67422265 67422348 -54421508 - MER91A DNA Tip100 -84 112 16 8 1099 748 312 102 20 chr11 67422979 67423283 -54420573 - MLT1A0 LTR MaLR -1 364 36 8 1099 2032 114 35 68 chr11 67423369 67423709 -54420147 + ORR1A4 LTR MaLR 1 329 0 8 1099 207 0 0 0 chr11 67423746 67423769 -54420087 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1099 441 238 89 16 chr11 67423950 67424074 -54419782 - LTR16D1 LTR ERVL -5 670 538 8 1099 183 203 185 15 chr11 67424420 67424485 -54419371 + L3 LINE CR1 3508 3583 -906 8 1099 286 186 50 58 chr11 67425462 67425582 -54418274 - Lx6 LINE L1 -5 7455 7337 8 1099 1151 290 72 20 chr11 67426005 67426504 -54417352 + L1MB7 LINE L1 5645 6169 -15 8 1099 422 232 120 59 chr11 67426838 67427020 -54416836 - ORR1D2 LTR MaLR -6 373 186 8 1099 610 220 25 0 chr11 67427079 67427197 -54416659 - B1_Mur2 SINE Alu -5 144 24 8 1099 266 0 29 0 chr11 67427380 67427414 -54416442 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1099 423 56 0 0 chr11 67427863 67427917 -54415939 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1099 1063 284 85 16 chr11 67428257 67428827 -54415029 + L1MA4 LINE L1 5619 6239 -61 8 1099 552 308 8 0 chr11 67429318 67429435 -54414421 + RSINE1 SINE B4 3 120 -45 8 1099 356 103 17 0 chr11 67429508 67429566 -54414290 + (GGAGA)n Simple_repeat Simple_repeat 3 61 0 8 1099 1389 61 0 0 chr11 67429566 67429746 -54414110 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 8 1099 270 0 0 0 chr11 67431310 67431340 -54412516 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1099 243 219 0 0 chr11 67431343 67431384 -54412472 - RSINE1 SINE B4 -19 146 106 8 1099 270 0 0 0 chr11 67431386 67431416 -54412440 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1099 389 167 0 0 chr11 67431416 67431476 -54412380 - RSINE1 SINE B4 0 165 106 8 1099 270 0 0 0 chr11 67431478 67431508 -54412348 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1099 857 226 25 0 chr11 67431508 67431667 -54412189 - RSINE1 SINE B4 0 165 3 8 1099 486 0 0 0 chr11 67433247 67433301 -54410555 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 8 1099 257 264 122 33 chr11 67433301 67433391 -54410465 - PB1D10 SINE Alu -12 105 8 8 1099 418 302 181 33 chr11 67433569 67433812 -54410044 - B4A SINE B4 -12 280 2 8 1099 625 331 135 16 chr11 67434159 67434478 -54409378 - Tigger7 DNA MER2_type -2082 409 53 8 1099 227 240 119 97 chr11 67435048 67435182 -54408674 - BC1_Mm scRNA scRNA -15 137 1 8 1099 257 291 202 0 chr11 67437420 67437499 -54406357 + L2a LINE L2 2816 2910 -509 8 1099 458 275 97 14 chr11 67437512 67437656 -54406200 - MER5A DNA MER1_type -29 160 5 8 1099 457 337 21 11 chr11 67437667 67437856 -54406000 + L2a LINE L2 2915 3105 -321 8 1099 445 325 149 5 chr11 67437861 67438056 -54405800 + MLT1F LTR MaLR 3 225 -323 8 1099 377 319 19 19 chr11 67438084 67438252 -54405604 + MLT1F LTR MaLR 427 650 -3 8 1099 379 311 37 166 chr11 67438323 67438494 -54405362 - MTEb LTR MaLR -53 326 172 8 1099 426 53 0 0 chr11 67438494 67438551 -54405305 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1099 379 311 37 166 chr11 67438551 67438753 -54405103 - MTEb LTR MaLR -208 171 1 8 1099 417 326 129 19 chr11 67438906 67439169 -54404687 - B4A SINE B4 0 292 1 8 1099 195 116 33 65 chr11 67439290 67439382 -54404474 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 8 1099 1033 223 9 23 chr11 67440010 67440226 -54403630 + ID_B1 SINE B4 1 213 -11 8 1099 935 169 18 0 chr11 67441599 67441765 -54402091 - URR1A DNA MER1_type 0 226 58 8 1099 247 286 85 110 chr11 67442514 67442632 -54401224 + PB1D10 SINE Alu 2 116 -1 8 1099 240 336 48 8 chr11 67444468 67444594 -54399262 + MER20 DNA MER1_type 85 215 -4 8 1099 1171 228 150 16 chr11 67445072 67445438 -54398418 - MTD LTR MaLR 0 419 5 8 1099 271 236 36 36 chr11 67445655 67445765 -54398091 + CT-rich Low_complexity Low_complexity 4 113 0 8 1099 261 0 0 0 chr11 67446111 67446140 -54397716 + (TAG)n Simple_repeat Simple_repeat 1 29 0 8 1099 421 289 56 37 chr11 67446140 67446302 -54397554 - RSINE1 SINE B4 0 165 1 8 1099 650 198 0 6 chr11 67446798 67446976 -54396880 + (TG)n Simple_repeat Simple_repeat 2 178 0 8 1099 655 179 0 11 chr11 67447017 67447198 -54396658 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1099 286 277 0 0 chr11 67448100 67448165 -54395691 - ID4 SINE ID -7 76 12 8 1099 402 21 0 0 chr11 67449136 67449183 -54394673 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1099 849 158 17 0 chr11 67449348 67449525 -54394331 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 8 1099 659 35 0 11 chr11 67449545 67449632 -54394224 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 8 1099 658 169 7 26 chr11 67451028 67451180 -54392676 + CT-rich Low_complexity Low_complexity 1 149 0 8 1099 575 393 36 67 chr11 67451531 67452027 -54391829 - L1M5 LINE L1 -3022 3124 2644 8 1099 711 123 0 0 chr11 67452289 67452411 -54391445 + (TG)n Simple_repeat Simple_repeat 2 123 0 8 1099 390 42 0 0 chr11 67452697 67452745 -54391111 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1099 461 343 31 54 chr11 67452868 67453233 -54390623 - ORR1E LTR MaLR -9 361 9 8 1099 509 206 150 0 chr11 67453530 67453693 -54390163 - B3A SINE B2 -21 195 9 8 1099 393 22 0 0 chr11 67453782 67453828 -54390028 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1099 655 127 23 23 chr11 67454148 67454325 -54389531 + (TG)n Simple_repeat Simple_repeat 2 178 0 8 1099 209 33 33 0 chr11 67454339 67454369 -54389487 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1099 343 131 50 28 chr11 67454414 67454555 -54389301 + (TG)n Simple_repeat Simple_repeat 1 144 0 8 1099 244 284 30 0 chr11 67454566 67454633 -54389223 - ID4_ SINE ID -13 70 2 8 1099 784 224 0 0 chr11 67454661 67454808 -54389048 - B1_Mur1 SINE Alu -1 148 2 8 1099 391 301 28 88 chr11 67454808 67454842 -54389014 - B4 SINE B4 -67 224 55 8 1099 459 228 54 23 chr11 67454842 67454972 -54388884 - B1F SINE Alu -11 138 5 8 1099 587 286 83 32 chr11 67455201 67455479 -54388377 + B4 SINE B4 1 292 0 8 1099 355 102 33 22 chr11 67455521 67455611 -54388245 + (CA)n Simple_repeat Simple_repeat 1 91 0 8 1099 313 247 47 20 chr11 67455627 67455776 -54388080 + (CA)n Simple_repeat Simple_repeat 1 153 0 8 1099 509 188 26 0 chr11 67455805 67455959 -54387897 + (CA)n Simple_repeat Simple_repeat 1 158 0 8 1099 819 274 116 7 chr11 67455961 67456237 -54387619 - MTEb LTR MaLR -52 327 22 8 1099 499 198 38 0 chr11 67457259 67457365 -54386491 - PB1D10 SINE Alu -7 110 1 8 1099 369 0 0 0 chr11 67457528 67457569 -54386287 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1099 396 0 0 0 chr11 67457569 67457612 -54386244 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1099 181 333 33 0 chr11 67457991 67458051 -54385805 - MER5A DNA MER1_type -120 69 8 8 1099 264 358 35 52 chr11 67458319 67458549 -54385307 + L1M5 LINE L1 5647 5872 -252 8 1099 663 236 31 31 chr11 67458560 67458618 -54385238 + B3A SINE B2 2 61 -137 8 1099 3904 38 39 27 chr11 67458618 67459131 -54384725 - MURVY-LTR LTR ERV1 0 519 1 8 1099 663 236 31 31 chr11 67459131 67459234 -54384622 + B3A SINE B2 62 163 -35 8 1099 252 0 0 0 chr11 67459235 67459263 -54384593 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1099 369 0 0 0 chr11 67459263 67459303 -54384553 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1099 422 196 0 10 chr11 67459329 67459432 -54384424 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1099 342 325 96 18 chr11 67459545 67459711 -54384145 + MER20 DNA MER1_type 36 214 -5 8 1099 796 310 43 14 chr11 67459826 67460107 -54383749 + B4A SINE B4 4 292 0 8 1099 721 58 44 50 chr11 67460114 67460295 -54383561 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1099 424 185 47 19 chr11 67460316 67460636 -54383220 + (CA)n Simple_repeat Simple_repeat 1 328 0 8 1099 709 74 65 0 chr11 67461916 67462024 -54381832 + B1_Mus2 SINE Alu 33 147 0 8 1099 435 221 25 42 chr11 67462803 67462921 -54380935 - URR1B DNA MER1_type 0 225 110 8 1099 441 0 0 0 chr11 67463210 67463259 -54380597 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1099 308 332 123 5 chr11 67464269 67464472 -54379384 - L1MC4 LINE L1 -1020 7022 6796 8 1099 207 231 0 0 chr11 67465120 67465159 -54378697 - MIRm SINE MIR -126 150 112 8 1099 263 352 109 50 chr11 67467446 67467667 -54376189 + MIR SINE MIR 13 246 -16 8 1099 224 237 156 55 chr11 67468415 67468516 -54375340 - MIRc SINE MIR -131 137 26 8 1099 462 101 0 0 chr11 67469574 67469643 -54374213 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 1099 321 132 19 0 chr11 67469650 67469703 -54374153 + HAL1-3A_ME LINE L1 1976 2029 -829 8 1099 265 309 27 57 chr11 67469797 67469945 -54373911 + MIR SINE MIR 5 148 -60 8 1099 270 257 0 0 chr11 67470740 67470845 -54373011 + (CA)n Simple_repeat Simple_repeat 2 106 0 8 1099 404 250 99 86 chr11 67471987 67472149 -54371707 + MER2 DNA MER2_type 179 342 -3 8 1099 263 189 203 0 chr11 67473030 67473104 -54370752 - PB1D10 SINE Alu 0 117 29 8 1099 332 305 29 47 chr11 67474000 67474172 -54369684 + L1MB3 LINE L1 6012 6180 -3 8 1099 513 252 9 0 chr11 67475834 67475941 -54367915 + ID_B1 SINE B4 98 205 -19 8 1099 337 260 104 16 chr11 67475941 67475955 -54367901 + B1F SINE Alu 18 149 0 8 1099 387 0 0 0 chr11 67475998 67476041 -54367815 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1099 264 243 120 40 chr11 67476049 67476199 -54367657 + MER102c DNA MER1_type 126 287 -44 8 1099 688 201 7 7 chr11 67476259 67476394 -54367462 - B1_Mus2 SINE Alu 0 147 13 8 1099 371 269 84 90 chr11 67476261 67476416 -54367440 - B4 SINE B4 -69 223 70 8 1099 260 304 83 76 chr11 67476287 67476444 -54367412 - MT2B LTR ERVL -323 278 121 8 1099 1122 125 0 0 chr11 67476678 67476854 -54367002 + (TC)n Simple_repeat Simple_repeat 1 176 0 9 1099 183 80 0 0 chr11 67477356 67477381 -54366475 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1099 388 258 3 11 chr11 67479257 67479355 -54364501 + PB1D10 SINE Alu 11 110 -10 9 1099 862 284 138 44 chr11 67479803 67480253 -54363603 + L1MB5 LINE L1 5552 6043 -131 9 1099 502 267 153 126 chr11 67480262 67480324 -54363532 - MLT1A LTR MaLR -7 367 309 9 1099 483 184 0 84 chr11 67480324 67480443 -54363413 + PB1D10 SINE Alu 3 111 -6 9 1099 502 267 153 126 chr11 67480443 67480706 -54363150 - MLT1A LTR MaLR -66 308 33 9 1099 225 291 34 23 chr11 67480778 67480866 -54362990 + L1MB5 LINE L1 6085 6173 -1 9 1099 344 221 137 0 chr11 67482582 67482677 -54361179 - MLT1A1 LTR MaLR -42 366 259 9 1099 1022 94 0 13 chr11 67482781 67482932 -54360924 - B2_Mm2 SINE B2 -20 175 27 9 1099 1116 35 7 20 chr11 67482958 67483105 -54360751 - B1_Mus2 SINE Alu -2 145 1 9 1099 307 0 0 0 chr11 67483106 67483145 -54360711 - B2_Mm2 SINE B2 -155 40 2 9 1099 386 266 61 94 chr11 67484272 67484517 -54359339 - MER63D DNA AcHobo -759 302 66 9 1099 1201 184 9 0 chr11 67484863 67485086 -54358770 + URR1B DNA MER1_type 1 225 0 9 1099 243 377 49 0 chr11 67486720 67486842 -54357014 + MIR3 SINE MIR 61 188 -20 9 1099 344 284 42 21 chr11 67486907 67487051 -54356805 - MER112 DNA MER1_type -76 185 39 9 1099 862 101 22 0 chr11 67487263 67487402 -54356454 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 9 1099 510 151 14 54 chr11 67487402 67487549 -54356307 + GA-rich Low_complexity Low_complexity 1 141 0 9 1099 459 0 0 0 chr11 67488387 67488438 -54355418 + (TGG)n Simple_repeat Simple_repeat 1 51 0 9 1099 788 243 19 23 chr11 67488616 67488831 -54355025 - B3 SINE B2 -1 215 2 9 1099 1326 102 5 36 chr11 67489611 67489834 -54354022 - Lx2 LINE L1 0 6997 6782 9 1099 323 332 143 14 chr11 67490668 67490891 -54352965 - L1MC LINE L1 -2246 5636 5385 9 1099 857 162 0 6 chr11 67491112 67491424 -54352432 + (TG)n Simple_repeat Simple_repeat 1 310 0 9 1099 921 156 0 0 chr11 67491439 67491689 -54352167 + (TG)n Simple_repeat Simple_repeat 1 250 0 9 1099 207 88 0 0 chr11 67491705 67491739 -54352117 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1099 978 140 0 0 chr11 67491761 67491940 -54351916 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1099 921 170 0 0 chr11 67491974 67492489 -54351367 + (TG)n Simple_repeat Simple_repeat 1 515 0 9 1099 867 140 0 0 chr11 67492505 67492676 -54351180 + (TG)n Simple_repeat Simple_repeat 2 172 0 9 1099 247 329 193 6 chr11 67492935 67493106 -54350750 - MIR SINE MIR -43 219 17 9 1099 360 0 0 0 chr11 67494260 67494300 -54349556 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1099 257 211 0 19 chr11 67494317 67494370 -54349486 - ID4_ SINE ID -26 57 6 9 1099 370 281 0 11 chr11 67494367 67494457 -54349399 - PB1D10 SINE Alu -26 91 3 9 1099 342 0 0 0 chr11 67495151 67495189 -54348667 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1099 229 205 185 37 chr11 67496366 67496447 -54347409 - PB1D10 SINE Alu -2 115 23 9 1099 277 247 65 0 chr11 67499482 67499559 -54344297 - ID4 SINE ID 0 83 2 9 1099 275 286 0 0 chr11 67500490 67500560 -54343296 - L1M5 LINE L1 -590 5854 5785 1 1099 369 0 0 0 chr11 67500596 67500637 -54343219 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1100 585 28 0 0 chr11 67504313 67504384 -54339472 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 3 1100 1184 58 29 3 chr11 67504587 67505196 -54338660 + (TAGA)n Simple_repeat Simple_repeat 1 624 0 4 1100 198 0 0 0 chr11 67505201 67505223 -54338633 + (CAGG)n Simple_repeat Simple_repeat 2 23 0 5 1100 331 282 155 0 chr11 67505240 67505343 -54338513 - RSINE1 SINE B4 -33 132 14 6 1100 414 0 0 0 chr11 67505646 67505692 -54338164 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1100 427 272 84 103 chr11 67505728 67505999 -54337857 + B4A SINE B4 29 292 0 8 1100 320 64 0 21 chr11 67506011 67506059 -54337797 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1100 361 310 48 48 chr11 67506179 67506386 -54337470 - MER21B LTR ERV1 -48 815 609 1 1100 2500 137 37 15 chr11 67506461 67506869 -54336987 + MTC LTR MaLR 5 421 0 1 1100 332 339 100 12 chr11 67507306 67507476 -54336380 - MER47B DNA MER2_type -12 406 222 1 1100 547 229 0 16 chr11 67507572 67507754 -54336102 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1100 445 250 0 22 chr11 67507760 67507944 -54335912 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1 1100 606 218 0 0 chr11 67507988 67508159 -54335697 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1100 528 81 0 0 chr11 67508159 67508233 -54335623 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1100 606 202 0 0 chr11 67508233 67508296 -54335560 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1100 557 64 13 0 chr11 67509516 67509594 -54334262 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 1 1100 189 107 0 0 chr11 67509652 67509680 -54334176 + (TTCC)n Simple_repeat Simple_repeat 4 31 0 1 1100 281 331 33 0 chr11 67509681 67509802 -54334054 + CT-rich Low_complexity Low_complexity 5 129 0 1 1100 355 219 31 22 chr11 67510326 67510424 -54333432 - PB1D7 SINE Alu -21 96 1 2 1100 335 303 0 10 chr11 67511022 67511122 -54332734 + MIR SINE MIR 22 120 -88 2 1100 206 370 134 8 chr11 67511923 67512082 -54331774 + MIR SINE MIR 15 190 -78 2 1100 203 255 0 56 chr11 67512399 67512453 -54331403 - MER5B DNA MER1_type -42 136 86 2 1100 214 245 41 0 chr11 67512425 67512474 -54331382 - MER5A DNA MER1_type -65 124 74 2 1100 246 265 0 14 chr11 67512566 67512635 -54331221 - L1M3 LINE L1 -771 5541 5474 2 1100 476 240 39 120 chr11 67512749 67512957 -54330899 - L1M3 LINE L1 -685 5483 5293 2 1100 545 125 250 0 chr11 67512984 67513096 -54330760 - B1_Mur1 SINE Alu -1 148 9 2 1100 230 233 45 72 chr11 67513003 67513114 -54330742 - B4 SINE B4 -105 187 80 2 1100 598 261 197 34 chr11 67513117 67513411 -54330445 - L1M3 LINE L1 -847 5293 4952 2 1100 226 250 107 0 chr11 67513898 67513954 -54329902 - PB1D10 SINE Alu -34 83 22 2 1100 354 103 39 0 chr11 67514515 67514593 -54329263 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1100 261 135 0 0 chr11 67514600 67514652 -54329204 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 3 1100 248 363 104 37 chr11 67515062 67515225 -54328631 - MER96 DNA hAT 0 175 2 3 1100 459 0 0 0 chr11 67515801 67515852 -54328004 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1100 283 378 0 0 chr11 67516955 67517074 -54326782 - PB1D7 SINE Alu -1 119 1 3 1100 182 292 43 43 chr11 67517686 67517779 -54326077 - MIR SINE MIR -55 153 61 3 1100 240 270 95 48 chr11 67518765 67518870 -54324986 - L1M3 LINE L1 -411 5769 5660 3 1100 585 231 45 0 chr11 67519009 67519143 -54324713 + B1F SINE Alu 9 148 -1 3 1100 357 329 88 86 chr11 67519895 67520268 -54323588 + MER96B DNA hAT 44 417 0 3 1100 466 237 21 0 chr11 67521180 67521277 -54322579 + MTEa LTR MaLR 6 104 -275 3 1100 1054 274 56 20 chr11 67521314 67521710 -54322146 - MTD-int LTR MaLR -759 499 3 3 1100 1799 194 58 16 chr11 67521712 67522113 -54321743 - MTD LTR MaLR -14 405 1 3 1100 605 257 14 0 chr11 67522141 67522281 -54321575 + MTEa LTR MaLR 238 379 0 3 1100 207 282 112 25 chr11 67523365 67523445 -54320411 - L2a LINE L2 -7 3419 3333 4 1100 2403 163 37 5 chr11 67523735 67524143 -54319713 + MTC LTR MaLR 1 421 0 4 1100 421 71 29 0 chr11 67524765 67524835 -54319021 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 4 1100 2092 61 29 4 chr11 67524888 67525168 -54318688 + LTRIS2 LTR ERV1 195 481 -83 4 1100 360 0 0 0 chr11 67525168 67525208 -54318648 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 1100 276 242 32 42 chr11 67525239 67525334 -54318522 + MTE2a LTR MaLR 278 371 -8 4 1100 22 35 0 0 chr11 67525358 67525387 -54318469 + AT_rich Low_complexity Low_complexity 1 29 0 4 1100 182 344 163 8 chr11 67525430 67525559 -54318297 - MIRc SINE MIR -113 155 7 4 1100 219 36 0 0 chr11 67526100 67526128 -54317728 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1100 1071 102 0 0 chr11 67526128 67526265 -54317591 - B1_Mus2 SINE Alu -10 137 1 4 1100 466 191 0 11 chr11 67526315 67526405 -54317451 - PB1D9 SINE Alu 0 120 32 5 1100 404 323 152 66 chr11 67526496 67526798 -54317058 + MLT1K LTR MaLR 204 531 -64 5 1100 260 343 54 48 chr11 67526837 67526984 -54316872 + L2a LINE L2 2845 2992 -427 5 1100 414 0 0 0 chr11 67527194 67527240 -54316616 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1100 659 296 23 23 chr11 67527240 67527413 -54316443 - B3A SINE B2 -24 174 2 5 1100 394 256 32 110 chr11 67527668 67527822 -54316034 - MLT1F LTR MaLR -361 187 46 5 1100 224 352 86 0 chr11 67527997 67528136 -54315720 + L2a LINE L2 3263 3413 -13 5 1100 207 114 0 0 chr11 67528136 67528171 -54315685 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 5 1100 714 129 0 0 chr11 67528453 67528593 -54315263 + (TCTA)n Simple_repeat Simple_repeat 1 140 0 5 1100 716 343 84 82 chr11 67529463 67530022 -54313834 + MLT1G1 LTR MaLR 1 560 -19 5 1100 200 299 51 13 chr11 67530697 67530775 -54313081 + MIRb SINE MIR 116 196 -72 5 1100 308 249 131 39 chr11 67530820 67531098 -54312758 - L1M4 LINE L1 -4190 3144 2948 6 1100 296 311 101 12 chr11 67531125 67531294 -54312562 - L1M4 LINE L1 -4874 2460 2277 6 1100 441 267 20 0 chr11 67531407 67531508 -54312348 - PB1D10 SINE Alu -7 110 8 6 1100 398 290 64 43 chr11 67531609 67531890 -54311966 - L1M4 LINE L1 -4929 1975 1689 6 1100 234 182 0 0 chr11 67531910 67531965 -54311891 - L1M4 LINE L1 -5901 1433 1379 6 1100 415 322 25 0 chr11 67532023 67532144 -54311712 - B1F SINE Alu -13 136 13 6 1100 643 270 28 22 chr11 67532303 67532481 -54311375 + B3A SINE B2 2 180 -18 6 1100 1935 175 63 109 chr11 67533253 67533741 -54310115 - Lx9 LINE L1 0 7644 7179 6 1100 674 261 32 46 chr11 67533749 67533966 -54309890 - ID_B1 SINE B4 -6 218 5 6 1100 269 111 12 47 chr11 67534081 67534166 -54309690 + (GTTTG)n Simple_repeat Simple_repeat 3 84 0 6 1100 215 190 0 33 chr11 67534168 67534228 -54309628 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 6 1100 785 161 7 59 chr11 67534230 67534382 -54309474 - B1_Mur4 SINE Alu -2 148 5 6 1100 227 331 94 57 chr11 67534515 67534707 -54309149 + MLT1H LTR MaLR 110 308 -241 6 1100 526 325 102 24 chr11 67536290 67536495 -54307361 + MER2 DNA MER2_type 1 221 -124 7 1100 827 279 32 16 chr11 67536502 67536691 -54307165 + B3A SINE B2 7 198 0 7 1100 513 0 0 0 chr11 67537081 67537138 -54306718 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1100 365 103 15 0 chr11 67538037 67538105 -54305751 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1100 510 264 92 7 chr11 67538105 67538246 -54305610 - B3A SINE B2 -44 154 2 7 1100 270 335 91 0 chr11 67538277 67538453 -54305403 - L1MD3 LINE L1 -22 7973 7782 7 1100 195 283 0 91 chr11 67538729 67538795 -54305061 - L2c LINE L2 -8 3379 3320 7 1100 423 338 31 31 chr11 67538824 67538986 -54304870 + MIR SINE MIR 39 200 -62 7 1100 834 278 76 4 chr11 67539029 67539293 -54304563 - B4A SINE B4 -9 283 1 7 1100 401 230 107 38 chr11 67539294 67539425 -54304431 - B1F1 SINE Alu 0 149 10 7 1100 264 386 6 19 chr11 67539633 67539794 -54304062 - ORR1E LTR MaLR -180 179 21 8 1100 380 293 84 14 chr11 67540268 67540410 -54303446 + MER34 LTR ERV1 384 535 -7 8 1100 185 0 0 39 chr11 67541297 67541323 -54302533 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 8 1100 1023 221 64 76 chr11 67541794 67542058 -54301798 + MTD LTR MaLR 48 308 -111 8 1100 249 83 0 0 chr11 67542097 67542133 -54301723 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1100 193 301 81 35 chr11 67542274 67542360 -54301496 - MIR SINE MIR -87 175 86 8 1100 216 86 0 0 chr11 67542769 67542804 -54301052 + (CAGT)n Simple_repeat Simple_repeat 4 38 0 8 1100 1666 173 81 105 chr11 67543038 67543304 -54300552 + ORR1D1 LTR MaLR 2 228 -146 8 1100 587 48 12 0 chr11 67543304 67543387 -54300469 + (CCTG)n Simple_repeat Simple_repeat 3 86 0 8 1100 1666 173 81 105 chr11 67543387 67543502 -54300354 + ORR1D1 LTR MaLR 229 372 -2 8 1100 677 293 91 91 chr11 67543686 67544039 -54299817 + ORR1E LTR MaLR 1 353 -6 8 1100 276 328 115 16 chr11 67544497 67544600 -54299256 - MIR SINE MIR -2 260 145 9 1100 438 20 0 0 chr11 67544600 67544651 -54299205 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1100 276 328 115 16 chr11 67544651 67544730 -54299126 - MIR SINE MIR -118 144 61 9 1100 371 338 47 70 chr11 67544930 67545143 -54298713 + MLT1F1 LTR MaLR 5 212 -357 9 1100 191 114 29 0 chr11 67545146 67545181 -54298675 + (TCTCCC)n Simple_repeat Simple_repeat 3 38 0 9 1100 561 252 201 107 chr11 67547140 67547176 -54296680 + ORR1E LTR MaLR 1 29 -330 9 1100 504 0 0 0 chr11 67547176 67547232 -54296624 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1100 561 252 201 107 chr11 67547232 67547523 -54296333 + ORR1E LTR MaLR 30 359 0 9 1100 1364 149 18 0 chr11 67548724 67548946 -54294910 + URR1A DNA MER1_type 1 226 0 9 1100 316 291 152 8 chr11 67548998 67549116 -54294740 - MLT1J2 LTR MaLR -55 393 259 9 1100 225 396 56 0 chr11 67549549 67549693 -54294163 - L2 LINE L2 -548 2871 2720 9 1100 366 292 31 70 chr11 67550273 67550402 -54293454 - MER5A1 DNA MER1_type -42 124 1 9 1100 199 347 41 0 chr11 67550442 67550540 -54293316 + MER5B DNA MER1_type 61 162 -16 1 1100 273 288 70 105 chr11 67551079 67551250 -54292606 + MIR SINE MIR 88 252 -10 1 1100 1620 263 92 9 chr11 67551833 67552289 -54291567 + RCHARR1 DNA MER1_type 3 496 -478 1 1100 877 204 50 70 chr11 67552291 67552491 -54291365 + B3A SINE B2 2 197 -1 1 1100 1453 255 97 29 chr11 67552506 67552951 -54290905 + RCHARR1 DNA MER1_type 478 952 -22 1 1100 323 243 35 61 chr11 67553154 67553268 -54290588 + PB1D10 SINE Alu 1 111 -6 1 1100 288 0 0 0 chr11 67554993 67555025 -54288831 + (TTA)n Simple_repeat Simple_repeat 3 34 0 1 1100 609 316 65 56 chr11 67555055 67555394 -54288462 + MLT1A LTR MaLR 1 342 -32 1 1100 1211 192 4 13 chr11 67556052 67556279 -54287577 + URR1B DNA MER1_type 1 225 0 1 1100 336 48 0 0 chr11 67556290 67556332 -54287524 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1 1100 432 0 0 0 chr11 67556332 67556379 -54287477 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1100 630 290 37 6 chr11 67556381 67556544 -54287312 - ID_B1 SINE B4 -25 199 32 1 1100 345 24 0 0 chr11 67556565 67556607 -54287249 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1100 791 236 23 17 chr11 67556616 67556793 -54287063 + B3A SINE B2 12 189 -9 1 1100 474 101 0 0 chr11 67556796 67556865 -54286991 + (TGAA)n Simple_repeat Simple_repeat 4 72 0 1 1100 648 264 68 68 chr11 67557024 67557557 -54286299 + L1M5 LINE L1 2923 3455 -2691 1 1100 464 230 117 41 chr11 67557582 67557727 -54286129 + RSINE1 SINE B4 2 157 -8 1 1100 389 368 7 34 chr11 67557833 67557982 -54285874 - B4A SINE B4 0 292 148 1 1100 429 272 48 0 chr11 67558059 67558162 -54285694 + PB1D10 SINE Alu 5 112 -5 1 1100 215 278 42 0 chr11 67559652 67559724 -54284132 + MIRb SINE MIR 46 120 -148 1 1100 235 337 61 61 chr11 67559915 67560111 -54283745 + MIR3 SINE MIR 2 197 -11 1 1100 318 297 123 15 chr11 67560651 67560781 -54283075 - L1M5 LINE L1 -2266 3880 3737 1 1100 246 81 0 0 chr11 67560947 67560984 -54282872 + (TTG)n Simple_repeat Simple_repeat 1 37 0 1 1100 258 32 0 0 chr11 67561032 67561063 -54282793 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1100 312 224 176 0 chr11 67561070 67561155 -54282701 - PB1D10 SINE Alu -12 105 6 1 1100 290 275 79 51 chr11 67561177 67561262 -54282594 - L1MEc LINE L1 -3765 2554 2470 1 1100 1281 232 99 6 chr11 67561262 67561604 -54282252 + ORR1D1 LTR MaLR 1 374 0 1 1100 500 295 108 34 chr11 67561604 67562267 -54281589 - L1MEc LINE L1 -3850 2469 1759 1 1100 216 0 0 0 chr11 67562268 67562292 -54281564 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1100 614 217 80 62 chr11 67562472 67562634 -54281222 + B3A SINE B2 1 165 -33 1 1100 567 122 0 0 chr11 67562778 67562868 -54280988 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1100 510 264 16 32 chr11 67562907 67563032 -54280824 - B4A SINE B4 -18 274 152 1 1100 284 326 113 70 chr11 67563086 67563118 -54280738 - B4A SINE B4 -23 269 130 1 1100 705 234 14 14 chr11 67563118 67563261 -54280595 - B1_Mur1 SINE Alu -1 148 6 1 1100 244 133 177 32 chr11 67563273 67563335 -54280521 - ID2 SINE ID -11 72 2 1 1100 198 0 0 0 chr11 67563638 67563660 -54280196 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1100 348 304 160 54 chr11 67564113 67564537 -54279319 + L1MC4a LINE L1 5521 5989 -1893 1 1100 246 279 29 0 chr11 67564569 67564631 -54279225 + PB1 SINE Alu 33 113 -14 1 1100 834 64 0 0 chr11 67564635 67564744 -54279112 + (GA)n Simple_repeat Simple_repeat 1 109 0 1 1100 314 285 126 42 chr11 67564746 67564889 -54278967 + HAL1-3A_ME LINE L1 2284 2438 -420 1 1100 286 301 89 94 chr11 67565475 67565633 -54278223 + B4 SINE B4 1 154 -138 1 1100 182 291 0 113 chr11 67565638 67565700 -54278156 + MIRm SINE MIR 39 93 -183 1 1100 432 0 0 0 chr11 67566236 67566284 -54277572 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 1100 1219 55 7 0 chr11 67566286 67566432 -54277424 - B1_Mus2 SINE Alu 0 147 1 1 1100 376 266 118 35 chr11 67566632 67566776 -54277080 + RSINE1 SINE B4 3 158 -7 1 1100 22 0 0 0 chr11 67566777 67566799 -54277057 + AT_rich Low_complexity Low_complexity 1 22 0 1 1100 337 293 48 48 chr11 67567270 67567374 -54276482 - PB1D10 SINE Alu -7 110 7 1 1100 253 239 119 0 chr11 67567493 67567560 -54276296 + MER5B DNA MER1_type 22 96 -82 1 1100 428 0 0 19 chr11 67568193 67568246 -54275610 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1100 22 0 0 0 chr11 67569515 67569537 -54274319 + AT_rich Low_complexity Low_complexity 1 22 0 1 1100 228 135 0 0 chr11 67570034 67570071 -54273785 + (GGGAGA)n Simple_repeat Simple_repeat 1 37 0 1 1100 306 342 87 24 chr11 67570310 67570517 -54273339 - MIR SINE MIR -24 238 19 1 1100 191 306 107 36 chr11 67570669 67570781 -54273075 - L2b LINE L2 -226 3149 3030 1 1100 441 0 0 0 chr11 67571806 67571855 -54272001 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1100 301 338 111 60 chr11 67572059 67572566 -54271290 + L2a LINE L2 2825 3426 0 1 1100 1327 252 25 46 chr11 67572794 67573278 -54270578 - RLTR11A LTR ERVK 0 528 27 1 1100 319 254 32 0 chr11 67575950 67576013 -54267843 + ID4 SINE ID 9 73 -10 1 1100 624 332 109 54 chr11 67577777 67578242 -54265614 + MLT1G3 LTR MaLR 34 587 -8 1 1100 527 226 0 0 chr11 67578374 67578476 -54265380 + PB1D10 SINE Alu 1 102 -15 1 1100 496 127 16 16 chr11 67579180 67579308 -54264548 + (TCTCTG)n Simple_repeat Simple_repeat 3 130 0 1 1100 443 112 0 39 chr11 67579314 67579416 -54264440 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1100 360 0 0 0 chr11 67579448 67579488 -54264368 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1100 619 254 360 45 chr11 67579517 67579803 -54264053 - MER119 DNA MER1_type 0 583 208 1 1100 495 277 0 0 chr11 67579848 67579967 -54263889 + ID_B1 SINE B4 92 210 -14 1 1100 958 230 27 117 chr11 67580662 67580962 -54262894 + B4A SINE B4 20 292 0 1 1100 278 250 52 13 chr11 67580902 67580979 -54262877 + B3A SINE B2 108 187 -11 1 1100 1382 66 4 0 chr11 67581395 67581623 -54262233 + (TTCCC)n Simple_repeat Simple_repeat 1 229 0 1 1100 207 180 19 39 chr11 67581922 67581974 -54261882 + G-rich Low_complexity Low_complexity 3 53 0 1 1100 406 217 11 21 chr11 67583563 67583657 -54260199 + MIRb SINE MIR 106 198 -70 1 1100 246 294 91 52 chr11 67584099 67584253 -54259603 + L1ME4a LINE L1 5960 6119 -5 1 1100 322 345 77 28 chr11 67585218 67585400 -54258456 - MIRc SINE MIR -29 239 49 1 1100 222 333 0 0 chr11 67585649 67585703 -54258153 + polypyrimidine Low_complexity Low_complexity 2 55 0 1 1100 477 0 0 0 chr11 67585974 67586027 -54257829 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1100 220 311 22 11 chr11 67587095 67587186 -54256670 + GA-rich Low_complexity Low_complexity 5 96 0 1 1100 1143 274 60 18 chr11 67587395 67587844 -54256012 + L1MB3 LINE L1 5705 6172 -11 1 1100 548 243 88 0 chr11 67588449 67588585 -54255271 + MIRb SINE MIR 4 151 -117 1 1100 309 51 0 0 chr11 67588739 67588778 -54255078 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1100 631 184 112 0 chr11 67588780 67588905 -54254951 - B1_Mur1 SINE Alu -10 139 1 1 1100 603 246 51 28 chr11 67588958 67589134 -54254722 - B3A SINE B2 -18 180 1 1 1100 183 42 0 0 chr11 67589191 67589215 -54254641 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1100 333 0 0 0 chr11 67589219 67589256 -54254600 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1100 206 379 21 0 chr11 67589312 67589407 -54254449 - MIRb SINE MIR -59 209 113 1 1100 215 374 77 0 chr11 67590178 67590269 -54253587 - MER5A DNA MER1_type -25 164 67 1 1100 960 254 42 17 chr11 67591153 67591393 -54252463 - B4 SINE B4 0 292 47 1 1100 859 146 7 0 chr11 67591999 67592136 -54251720 - URR1B DNA MER1_type -5 220 83 1 1100 377 287 65 32 chr11 67592136 67592154 -54251702 + CYRA11_Mm Unknown Y-chromosome 176 335 -282 1 1100 329 0 24 0 chr11 67592206 67592247 -54251609 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1100 269 316 14 89 chr11 67592511 67592657 -54251199 - MER103 DNA DNA -21 145 11 1 1100 21 0 0 0 chr11 67592672 67592693 -54251163 + AT_rich Low_complexity Low_complexity 1 21 0 1 1100 398 179 5 89 chr11 67593085 67593207 -54250649 + B2_Mm2 SINE B2 57 168 -25 1 1100 1550 27 0 26 chr11 67593207 67593398 -54250458 + B2_Mm2 SINE B2 2 187 -8 1 1100 378 215 21 97 chr11 67593398 67593419 -54250437 + B2_Mm1t SINE B2 169 189 -4 1 1100 246 307 100 23 chr11 67593494 67593624 -54250232 - Charlie8 DNA MER1_type -2191 237 98 1 1100 732 170 0 0 chr11 67594541 67594676 -54249180 + C-rich Low_complexity Low_complexity 46 180 0 1 1100 271 276 96 59 chr11 67595069 67595204 -54248652 + MLT1A0 LTR MaLR 226 365 0 1 1100 258 105 0 0 chr11 67595285 67595323 -54248533 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1 1100 292 291 38 0 chr11 67595325 67595404 -54248452 - ID4_ SINE ID 0 83 2 1 1100 360 0 0 0 chr11 67595559 67595599 -54248257 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1100 506 232 102 53 chr11 67595823 67596010 -54247846 - L1_Rod LINE L1 0 5847 5652 1 1100 745 218 17 78 chr11 67596729 67596866 -54246990 - B3A SINE B2 -30 168 42 1 1100 1081 118 30 79 chr11 67596866 67597068 -54246788 + B2_Mm2 SINE B2 2 193 -2 1 1100 745 218 17 78 chr11 67597068 67597109 -54246747 - B3A SINE B2 -157 41 1 1 1100 5233 35 6 5 chr11 67597206 67597830 -54246026 - L1_Mus1 LINE L1 -2 6565 5941 1 1100 1464 39 0 0 chr11 67598242 67598421 -54245435 + (GGAGAA)n Simple_repeat Simple_repeat 1 179 0 1 1100 248 297 29 29 chr11 67598501 67598605 -54245251 + MLT1A1 LTR MaLR 293 396 -12 2 1100 450 0 0 0 chr11 67599163 67599213 -54244643 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1100 227 197 0 43 chr11 67600274 67600343 -54243513 + A-rich Low_complexity Low_complexity 4 69 0 2 1100 384 22 0 0 chr11 67600345 67600390 -54243466 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1100 3624 254 51 25 chr11 67600396 67601311 -54242545 - Lx7 LINE L1 -395 7301 6363 2 1100 317 213 80 0 chr11 67601515 67601590 -54242266 - ID4 SINE ID -2 81 1 2 1100 288 0 0 0 chr11 67602446 67602478 -54241378 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1100 513 0 0 0 chr11 67602478 67602534 -54241322 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1100 481 219 119 24 chr11 67603585 67603711 -54240145 + B1_Mur2 SINE Alu 3 140 -9 2 1100 719 224 72 0 chr11 67604098 67604250 -54239606 - RSINE1 SINE B4 -1 164 2 2 1100 346 299 93 0 chr11 67604910 67605007 -54238849 + PB1D10 SINE Alu 11 116 -1 2 1100 216 0 0 0 chr11 67606452 67606476 -54237380 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1100 731 299 92 11 chr11 67606671 67607030 -54236826 - L1MB3 LINE L1 -2 6181 5794 2 1100 336 24 0 0 chr11 67607313 67607354 -54236502 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1100 1279 127 0 0 chr11 67607560 67607749 -54236107 + URR1B DNA MER1_type 33 221 -4 2 1100 219 36 0 0 chr11 67607938 67607966 -54235890 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 1100 291 221 15 0 chr11 67608665 67608733 -54235123 + ID4 SINE ID 13 81 -2 2 1100 213 296 14 14 chr11 67609294 67609366 -54234490 + L2 LINE L2 2018 2089 -1330 2 1100 818 280 142 48 chr11 67609378 67609750 -54234106 - MER57D LTR ERV1 -4 407 1 2 1100 386 322 160 19 chr11 67609774 67610037 -54233819 + L2 LINE L2 2122 2421 -998 2 1100 229 178 0 0 chr11 67610432 67610477 -54233379 + L1ME3A LINE L1 6048 6092 -81 2 1100 625 243 50 75 chr11 67610693 67610893 -54232963 + B3A SINE B2 3 197 -1 2 1100 185 406 24 0 chr11 67611039 67611162 -54232694 - MIRb SINE MIR -45 223 98 2 1100 1454 147 0 9 chr11 67611165 67611392 -54232464 + URR1B DNA MER1_type 1 225 0 2 1100 1029 141 176 10 chr11 67613807 67614000 -54229856 + URR1B DNA MER1_type 1 225 0 2 1100 186 154 53 88 chr11 67614185 67614242 -54229614 - L4 LINE RTE -1663 366 312 2 1100 239 327 37 0 chr11 67614444 67614551 -54229305 - L1MD LINE L1 -3453 2693 2583 2 1100 1050 64 7 14 chr11 67615070 67615213 -54228643 + URR1A DNA MER1_type 85 226 0 2 1100 562 160 122 32 chr11 67615619 67615742 -54228114 + ID_B1 SINE B4 79 212 -12 2 1100 261 83 0 0 chr11 67615742 67615778 -54228078 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 2 1100 697 288 85 36 chr11 67615816 67616097 -54227759 - MTEa LTR MaLR -81 298 4 2 1100 385 247 65 0 chr11 67616100 67616193 -54227663 + PB1D7 SINE Alu 22 120 0 2 1100 372 258 10 10 chr11 67616220 67616318 -54227538 + PB1D10 SINE Alu 5 102 -15 2 1100 263 379 41 53 chr11 67616977 67617147 -54226709 - LTR78 LTR ERV1 -345 959 792 2 1100 251 222 62 16 chr11 67617150 67617214 -54226642 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 2 1100 236 191 21 0 chr11 67617546 67617593 -54226263 + CT-rich Low_complexity Low_complexity 3 50 0 2 1100 393 311 28 0 chr11 67617643 67617749 -54226107 - LTR78 LTR ERV1 -1193 111 3 2 1100 750 217 66 20 chr11 67617839 67618035 -54225821 - B3A SINE B2 -6 210 1 2 1100 2390 68 3 3 chr11 67618121 67618431 -54225425 - Lx2 LINE L1 0 6997 6688 2 1100 329 420 0 19 chr11 67618455 67618615 -54225241 - L1M5 LINE L1 -349 5775 5619 2 1100 599 217 82 98 chr11 67619150 67619344 -54224512 - B3A SINE B2 -5 193 3 2 1100 2030 111 10 10 chr11 67619537 67619838 -54224018 - ORR1A4 LTR MaLR 0 329 29 2 1100 744 232 0 88 chr11 67620044 67620261 -54223595 - B3A SINE B2 0 198 1 2 1100 327 225 12 48 chr11 67620443 67620527 -54223329 - ID4 SINE ID 0 83 3 2 1100 1837 234 9 24 chr11 67620819 67621338 -54222518 + Lx6 LINE L1 6457 7324 -136 2 1100 210 71 0 0 chr11 67621338 67621366 -54222490 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2 1100 366 235 25 16 chr11 67621368 67621489 -54222367 + Lx6 LINE L1 7316 7437 -23 2 1100 281 358 88 16 chr11 67621664 67621846 -54222010 + LTR16A1 LTR ERVL 49 243 -213 2 1100 808 250 7 7 chr11 67622069 67622222 -54221634 + RSINE1 SINE B4 11 163 -2 2 1100 483 174 68 37 chr11 67622345 67622506 -54221350 - Lx9 LINE L1 -2 7642 7477 2 1100 1103 113 18 30 chr11 67622517 67622681 -54221175 + B2_Mm2 SINE B2 1 162 -33 2 1100 274 312 39 0 chr11 67622690 67622767 -54221089 - Lx9 LINE L1 -274 7370 7291 2 1100 254 278 14 0 chr11 67623059 67623131 -54220725 + ID2 SINE ID 9 81 -2 2 1100 1117 69 0 27 chr11 67623695 67623831 -54220025 + B1_Mm SINE Alu 2 137 -10 2 1100 477 0 0 0 chr11 67623831 67623884 -54219972 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 1100 1117 69 0 27 chr11 67623884 67623896 -54219960 + B1_Mm SINE Alu 138 146 -1 2 1100 270 285 90 30 chr11 67623981 67624115 -54219741 - MARNA DNA Mariner -173 413 272 2 1100 456 231 46 59 chr11 67624170 67624322 -54219534 + MER103 DNA DNA 9 158 -8 2 1100 184 327 0 0 chr11 67624449 67624501 -54219355 + MIRm SINE MIR 206 257 -19 2 1100 769 202 120 62 chr11 67625557 67625831 -54218025 + B4A SINE B4 1 290 -2 2 1100 480 35 0 0 chr11 67625850 67625908 -54217948 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1100 335 250 0 0 chr11 67626700 67626760 -54217096 + U4 snRNA snRNA 1 60 -85 2 1100 514 306 33 16 chr11 67626891 67627074 -54216782 - RMER15 LTR ERVL -14 561 376 2 1100 950 261 123 3 chr11 67627173 67627530 -54216326 - L1MB8 LINE L1 -331 5847 5448 2 1100 195 348 43 0 chr11 67627899 67628014 -54215842 + MIRm SINE MIR 31 150 -126 2 1100 430 310 123 0 chr11 67628115 67628286 -54215570 - MER2 DNA MER2_type -120 225 34 2 1100 710 0 0 0 chr11 67629941 67630026 -54213830 + L1Md_T LINE L1 6498 6582 0 2 1100 257 170 84 11 chr11 67630248 67630343 -54213513 + (TA)n Simple_repeat Simple_repeat 1 102 0 2 1100 900 201 104 35 chr11 67630723 67630896 -54212960 + B3 SINE B2 2 192 -24 2 1100 3236 43 2 12 chr11 67630896 67631295 -54212561 + MTA_Mm LTR MaLR 1 395 -1 2 1100 900 201 104 35 chr11 67631295 67631322 -54212534 + B3 SINE B2 193 216 0 2 1100 594 239 87 82 chr11 67631344 67631540 -54212316 + B3A SINE B2 2 198 0 2 1100 456 19 0 0 chr11 67631783 67631836 -54212020 + (CAGAGA)n Simple_repeat Simple_repeat 1 53 0 2 1101 226 0 29 29 chr11 67633374 67633409 -54210447 + (CTG)n Simple_repeat Simple_repeat 2 36 0 2 1101 336 305 35 28 chr11 67634052 67634197 -54209659 + LTR33A_ LTR ERVL 335 480 -51 2 1101 713 197 129 0 chr11 67634202 67634349 -54209507 + MTEb LTR MaLR 42 207 -172 2 1101 1352 107 0 5 chr11 67634727 67634915 -54208941 + B2_Mm2 SINE B2 1 187 -8 2 1101 1076 160 11 0 chr11 67635985 67636160 -54207696 - B3 SINE B2 -5 211 35 2 1101 324 265 124 46 chr11 67636386 67636570 -54207286 + LTR16E1 LTR ERVL 262 536 -2 2 1101 576 315 5 58 chr11 67636895 67637084 -54206772 - ORR1E LTR MaLR -176 183 5 2 1101 182 105 26 0 chr11 67637437 67637475 -54206381 + (AGGGGG)n Simple_repeat Simple_repeat 4 42 0 2 1101 935 168 0 0 chr11 67637832 67637981 -54205875 + B1_Mur4 SINE Alu 2 150 0 2 1101 1007 142 0 0 chr11 67638137 67638278 -54205578 + B1_Mur4 SINE Alu 3 143 -7 2 1101 345 47 0 0 chr11 67638278 67638321 -54205535 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 1101 820 231 66 10 chr11 67638764 67638922 -54204934 + B3 SINE B2 9 179 -37 2 1101 204 97 0 0 chr11 67638922 67638953 -54204903 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1101 820 231 66 10 chr11 67638953 67638991 -54204865 + B3 SINE B2 180 216 0 2 1101 590 79 0 11 chr11 67639544 67639634 -54204222 + (GGGA)n Simple_repeat Simple_repeat 1 89 0 2 1101 462 230 40 10 chr11 67639797 67639898 -54203958 - PB1D10 SINE Alu -2 115 12 2 1101 396 330 95 47 chr11 67640601 67640835 -54203021 + L1MC LINE L1 4752 5001 -1145 2 1101 1619 207 110 13 chr11 67640835 67641217 -54202639 - MTD LTR MaLR 0 419 1 2 1101 396 330 95 47 chr11 67641217 67641278 -54202578 + L1MC LINE L1 5002 5060 -1086 2 1101 331 299 67 13 chr11 67641361 67641510 -54202346 + L1MD LINE L1 5134 5290 -856 2 1101 317 209 74 45 chr11 67641515 67641663 -54202193 + B3 SINE B2 2 168 -30 2 1101 341 86 17 0 chr11 67641664 67641722 -54202134 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1101 203 162 0 0 chr11 67641722 67641759 -54202097 + GA-rich Low_complexity Low_complexity 1 37 0 2 1101 750 326 98 32 chr11 67641780 67642508 -54201348 + L1ME1 LINE L1 5271 6046 -133 2 1101 381 43 0 0 chr11 67642543 67642590 -54201266 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1101 821 135 30 8 chr11 67642648 67642782 -54201074 - B1_Mur4 SINE Alu -5 145 9 2 1101 291 267 13 13 chr11 67642828 67642904 -54200952 + ID4 SINE ID 8 83 0 2 1101 1432 179 138 30 chr11 67643061 67643395 -54200461 - ORR1D2 LTR MaLR 0 370 1 2 1101 230 306 27 14 chr11 67643399 67643472 -54200384 - Kanga1c DNA Tc2 -649 80 7 2 1101 392 248 120 33 chr11 67643644 67643720 -54200136 + B4 SINE B4 2 90 -202 2 1101 235 241 83 100 chr11 67643720 67643840 -54200016 + PB1D9 SINE Alu 3 120 0 2 1101 257 327 87 17 chr11 67644193 67644308 -54199548 + MIRc SINE MIR 89 211 -57 2 1101 1636 214 43 58 chr11 67644394 67644787 -54199069 + MTC LTR MaLR 5 391 -28 2 1101 4012 213 128 63 chr11 67644789 67645964 -54197892 + MTC-int LTR MaLR 3 1253 -5 2 1101 1674 197 142 16 chr11 67645971 67646343 -54197513 + MTC LTR MaLR 3 421 0 2 1101 688 263 84 13 chr11 67646349 67646576 -54197280 + MLT2D LTR ERVL 8 250 -164 2 1101 399 240 0 0 chr11 67646579 67646654 -54197202 + ID_B1 SINE B4 82 156 -68 2 1101 490 168 9 18 chr11 67646768 67646877 -54196979 + CT-rich Low_complexity Low_complexity 4 111 0 3 1101 398 311 119 16 chr11 67647101 67647294 -54196562 + L2a LINE L2 3211 3423 -3 3 1101 339 336 31 0 chr11 67647294 67647422 -54196434 + (TGGA)n Simple_repeat Simple_repeat 3 134 0 3 1101 240 163 0 0 chr11 67647422 67647465 -54196391 + (CAGA)n Simple_repeat Simple_repeat 3 45 0 3 1101 1152 186 24 0 chr11 67648405 67648615 -54195241 + B3 SINE B2 2 216 0 3 1101 468 0 0 0 chr11 67649168 67649220 -54194636 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1101 22 35 0 0 chr11 67649667 67649696 -54194160 + AT_rich Low_complexity Low_complexity 1 29 0 3 1101 226 208 19 19 chr11 67649770 67649824 -54194032 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 1101 464 361 61 53 chr11 67649826 67650168 -54193688 - L1ME3 LINE L1 -34 6128 5784 3 1101 255 330 51 17 chr11 67650208 67650325 -54193531 + MLT1A0 LTR MaLR 1 121 -244 3 1101 309 292 68 110 chr11 67650511 67650663 -54193193 - L1MEg LINE L1 -5198 886 753 3 1101 829 218 45 0 chr11 67650663 67650842 -54193014 - B3A SINE B2 -7 191 5 3 1101 309 292 68 110 chr11 67650842 67650908 -54192948 - L1MEg LINE L1 -5332 752 677 3 1101 400 211 167 50 chr11 67651496 67651616 -54192240 - ID_B1 SINE B4 0 224 91 3 1101 287 247 115 23 chr11 67651538 67651625 -54192231 - PB1D10 SINE Alu -22 95 1 3 1101 264 319 77 34 chr11 67651644 67651761 -54192095 + PB1 SINE Alu 3 124 -3 3 1101 1367 79 17 0 chr11 67651766 67651944 -54191912 + B2_Mm2 SINE B2 1 181 -14 3 1101 954 167 0 0 chr11 67652277 67652457 -54191399 + GA-rich Low_complexity Low_complexity 1 180 0 3 1101 467 52 0 0 chr11 67652457 67652515 -54191341 + (GAA)n Simple_repeat Simple_repeat 3 60 0 3 1101 469 274 22 45 chr11 67652525 67652659 -54191197 + B4A SINE B4 49 179 -113 3 1101 1781 147 65 92 chr11 67653229 67653611 -54190245 - ORR1C2 LTR MaLR -10 374 3 3 1101 600 211 21 50 chr11 67653745 67653885 -54189971 + MTC LTR MaLR 286 421 0 3 1101 417 317 206 50 chr11 67654817 67654940 -54188916 + MER2 DNA MER2_type 20 177 -168 3 1101 872 220 78 5 chr11 67654940 67655132 -54188724 - B3 SINE B2 -10 206 1 3 1101 417 317 206 50 chr11 67655132 67655290 -54188566 + MER2 DNA MER2_type 178 345 0 3 1101 360 287 32 0 chr11 67655864 67655958 -54187898 + B1F2 SINE Alu 2 98 -51 3 1101 318 180 0 0 chr11 67655958 67656019 -54187837 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1101 418 217 103 31 chr11 67656642 67656808 -54187048 - MIR SINE MIR -68 200 32 3 1101 769 175 52 46 chr11 67657014 67657188 -54186668 + B2_Mm2 SINE B2 3 177 -18 3 1101 344 119 17 0 chr11 67657189 67657248 -54186608 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 3 1101 219 225 0 0 chr11 67658183 67658223 -54185633 + polypurine Low_complexity Low_complexity 3 42 0 3 1101 406 314 58 22 chr11 67658809 67659034 -54184822 + L1MC LINE L1 2855 3087 -3059 3 1101 913 224 44 0 chr11 67659034 67659239 -54184617 + B3 SINE B2 3 216 0 3 1101 309 224 93 12 chr11 67659272 67659358 -54184498 + PB1D9 SINE Alu 20 112 -8 3 1101 317 298 71 14 chr11 67659365 67659498 -54184358 + L1MD LINE L1 3091 3223 -2923 3 1101 1440 75 16 0 chr11 67659498 67659684 -54184172 + B2_Mm2 SINE B2 2 190 -5 3 1101 317 311 76 4 chr11 67659684 67659808 -54184048 + L1MD LINE L1 3224 3362 -2784 3 1101 554 275 146 12 chr11 67659867 67660114 -54183742 + L1MA4 LINE L1 5321 5600 -697 3 1101 277 312 0 31 chr11 67660204 67660300 -54183556 + Lx7 LINE L1 5593 5685 -2011 3 1101 950 242 0 27 chr11 67660299 67660524 -54183332 - Lx9 LINE L1 -284 7360 7142 3 1101 633 208 16 16 chr11 67660542 67660669 -54183187 + B1_Mur4 SINE Alu 2 128 -22 3 1101 1172 193 93 16 chr11 67660669 67660917 -54182939 - Lx9 LINE L1 -507 7137 6871 3 1101 323 187 109 71 chr11 67660915 67660970 -54182886 + Lx9 LINE L1 7453 7510 -134 3 1101 282 116 0 0 chr11 67660970 67661013 -54182843 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1101 279 0 0 0 chr11 67661013 67661043 -54182813 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 1101 323 187 109 71 chr11 67661043 67661170 -54182686 + Lx9 LINE L1 7511 7642 -2 3 1101 342 245 53 0 chr11 67661231 67661325 -54182531 + L1MA4 LINE L1 5831 5929 -371 3 1101 1084 299 101 73 chr11 67661521 67662765 -54181091 + L1M5 LINE L1 3473 4750 -1396 3 1101 374 257 0 117 chr11 67662875 67663003 -54180853 + MT2B LTR ERVL 145 257 -344 3 1101 900 181 0 20 chr11 67662899 67663051 -54180805 + B1_Mur3 SINE Alu 1 149 0 3 1101 825 140 0 0 chr11 67663325 67663461 -54180395 + (TA)n Simple_repeat Simple_repeat 1 136 0 3 1101 1240 82 6 0 chr11 67663470 67663640 -54180216 - B2_Mm1a SINE B2 -22 171 1 3 1101 493 279 0 7 chr11 67663862 67663999 -54179857 + Lx9 LINE L1 7323 7458 -186 3 1101 875 239 45 51 chr11 67664018 67664349 -54179507 - RLTR15 LTR ERVK -17 342 14 3 1101 33 0 0 0 chr11 67664459 67664492 -54179364 + AT_rich Low_complexity Low_complexity 1 33 0 3 1101 376 280 100 0 chr11 67664995 67665095 -54178761 + B1F SINE Alu 2 111 -38 3 1101 416 274 0 81 chr11 67665102 67665225 -54178631 + B1_Mur3 SINE Alu 1 113 -36 3 1101 279 0 0 0 chr11 67665230 67665261 -54178595 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 3 1101 194 350 58 29 chr11 67665556 67665659 -54178197 + L2a LINE L2 3291 3396 -30 3 1101 537 234 72 7 chr11 67666798 67666936 -54176920 + MIRb SINE MIR 38 184 -84 3 1101 676 199 43 14 chr11 67666936 67667074 -54176782 + RSINE1 SINE B4 3 144 -21 3 1101 333 0 0 0 chr11 67667090 67667127 -54176729 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1101 306 0 0 0 chr11 67667488 67667522 -54176334 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1101 468 250 46 9 chr11 67667869 67667978 -54175878 + PB1D7 SINE Alu 1 113 -7 3 1101 185 94 0 30 chr11 67668552 67668585 -54175271 + (GGGAGA)n Simple_repeat Simple_repeat 5 36 0 3 1101 736 318 134 35 chr11 67670276 67670589 -54173267 - MER2 DNA MER2_type 0 345 2 3 1101 183 162 0 0 chr11 67670951 67670988 -54172868 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1101 275 282 123 39 chr11 67671416 67671571 -54172285 + MLT1B LTR MaLR 211 378 -12 3 1101 183 42 0 0 chr11 67672530 67672554 -54171302 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1101 840 213 62 38 chr11 67672565 67672775 -54171081 - B3 SINE B2 0 216 2 3 1101 764 165 37 8 chr11 67673234 67673368 -54170488 + B1_Mur1 SINE Alu 10 147 -2 3 1101 332 317 105 13 chr11 67673407 67673693 -54170163 - L2b LINE L2 -136 3290 2964 3 1101 301 270 74 57 chr11 67674137 67674259 -54169597 + PB1D7 SINE Alu 5 128 -19 3 1101 239 286 112 21 chr11 67674754 67674897 -54168959 + HAL1 LINE L1 1385 1540 -967 3 1101 249 68 16 63 chr11 67675514 67675577 -54168279 + (TTTTTG)n Simple_repeat Simple_repeat 1 60 0 3 1101 202 195 0 47 chr11 67676646 67676689 -54167167 + T-rich Low_complexity Low_complexity 77 117 0 3 1101 1484 156 116 7 chr11 67676809 67677086 -54166770 - MTC LTR MaLR 0 421 115 3 1101 246 62 0 0 chr11 67677626 67677658 -54166198 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1101 357 299 8 0 chr11 67677859 67677976 -54165880 + L1M5 LINE L1 5610 5727 -446 3 1101 267 152 0 0 chr11 67678086 67678132 -54165724 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1101 1519 75 0 0 chr11 67678229 67678429 -54165427 - L1_Mus2 LINE L1 0 6566 6367 3 1101 188 378 14 0 chr11 67679163 67679237 -54164619 + L2 LINE L2 2810 2884 -535 3 1101 315 202 10 20 chr11 67679391 67679492 -54164364 + CT-rich Low_complexity Low_complexity 4 103 0 3 1101 294 282 0 0 chr11 67679497 67679568 -54164288 - ID4 SINE ID -9 74 4 3 1101 32 57 0 0 chr11 67679791 67679844 -54164012 + AT_rich Low_complexity Low_complexity 1 53 0 3 1101 4487 14 2 0 chr11 67679849 67680341 -54163515 + MT2_Mm LTR ERVL 1 493 0 3 1101 41454 16 14 0 chr11 67680341 67685628 -54158228 + MERVL-int LTR ERVL 1 5360 -125 3 1101 403 167 46 35 chr11 67685628 67685715 -54158141 + ORR1A3-int LTR MaLR 553 640 -1323 3 1101 319 0 0 0 chr11 67685715 67685753 -54158103 + MERVL-int LTR ERVL 5448 5485 0 3 1101 4487 14 2 0 chr11 67685753 67686245 -54157611 + MT2_Mm LTR ERVL 1 493 0 3 1101 804 201 0 7 chr11 67686281 67686431 -54157425 - B1_Mur3 SINE Alu 0 149 1 3 1101 202 340 191 21 chr11 67686838 67687262 -54156594 + L2 LINE L2 2139 2634 -785 3 1101 1032 211 5 15 chr11 67687411 67687608 -54156248 + B3 SINE B2 1 195 -21 3 1101 378 0 0 0 chr11 67687609 67687651 -54156205 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1101 917 187 113 5 chr11 67687653 67687847 -54156009 + B3 SINE B2 2 216 0 3 1101 659 251 108 97 chr11 67688319 67688597 -54155259 - MER2 DNA MER2_type -64 281 1 3 1101 397 309 78 30 chr11 67689370 67689431 -54154425 - B4A SINE B4 -41 251 104 3 1101 464 247 10 0 chr11 67689431 67689528 -54154328 - PB1D10 SINE Alu -17 100 3 3 1101 353 263 194 8 chr11 67689659 67689793 -54154063 - RSINE1 SINE B4 -4 161 3 3 1101 396 0 0 0 chr11 67690913 67690957 -54152899 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1101 599 184 126 90 chr11 67690958 67691125 -54152731 - RMER1B Other Other -10 1056 884 3 1101 588 272 136 22 chr11 67691168 67691574 -54152282 + HAL1 LINE L1 1276 1727 -780 3 1101 2910 190 102 35 chr11 67691601 67692314 -54151542 + Lx9 LINE L1 6882 7642 -2 3 1101 678 44 0 0 chr11 67693927 67694017 -54149839 + (TC)n Simple_repeat Simple_repeat 2 91 0 3 1101 249 304 207 20 chr11 67694282 67694480 -54149376 + MIR SINE MIR 13 247 -15 3 1101 335 260 132 59 chr11 67695136 67695375 -54148481 + MTEb LTR MaLR 94 357 -22 3 1101 311 360 94 30 chr11 67696422 67696625 -54147231 + MIRb SINE MIR 45 260 -8 3 1101 270 0 0 0 chr11 67697287 67697317 -54146539 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1101 1021 291 47 60 chr11 67697326 67697856 -54146000 + L1M3 LINE L1 5302 5824 -356 3 1101 331 165 24 0 chr11 67697922 67698007 -54145849 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1101 922 204 9 67 chr11 67699496 67699706 -54144150 + B3A SINE B2 1 198 0 4 1101 678 222 6 30 chr11 67700543 67700710 -54143146 + RSINE1 SINE B4 3 165 0 4 1101 552 198 0 43 chr11 67700780 67700896 -54142960 + PB1D10 SINE Alu 1 111 -6 4 1101 395 194 0 11 chr11 67701154 67701248 -54142608 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 1101 225 100 71 48 chr11 67701905 67701947 -54141909 - L1M5 LINE L1 -495 5745 5703 4 1101 1113 144 12 0 chr11 67702451 67702624 -54141232 + B2_Mm1t SINE B2 5 179 -14 4 1101 351 119 162 75 chr11 67702671 67702784 -54141072 + B2_Mm2 SINE B2 47 184 -9 4 1101 21 36 0 0 chr11 67703227 67703255 -54140601 + AT_rich Low_complexity Low_complexity 1 28 0 4 1101 606 213 48 32 chr11 67703274 67703400 -54140456 + B1F SINE Alu 19 146 -3 4 1101 841 221 85 5 chr11 67703639 67703839 -54140017 - B3 SINE B2 0 216 1 4 1101 419 260 65 0 chr11 67703865 67703988 -54139868 - L1MA6 LINE L1 -6 6294 6164 4 1101 522 195 88 9 chr11 67704184 67704298 -54139558 - B1F1 SINE Alu -20 129 7 4 1101 554 264 10 44 chr11 67704563 67704699 -54139157 + ID_B1 SINE B4 71 203 -21 4 1101 471 95 0 0 chr11 67704711 67704785 -54139071 + (GGGA)n Simple_repeat Simple_repeat 4 77 0 4 1101 390 246 64 21 chr11 67705547 67705688 -54138168 - Tigger7 DNA MER2_type -77 2414 2268 4 1101 650 247 66 6 chr11 67706130 67706297 -54137559 + MER5A DNA MER1_type 1 177 -12 4 1101 214 251 152 114 chr11 67706708 67706842 -54137014 + B2_Mm1a SINE B2 2 134 -59 4 1101 432 37 0 0 chr11 67706842 67706896 -54136960 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1101 214 251 152 114 chr11 67706896 67706945 -54136911 + B2_Mm1a SINE B2 135 192 -1 4 1101 27 29 0 0 chr11 67706988 67707022 -54136834 + AT_rich Low_complexity Low_complexity 1 34 0 4 1101 1242 34 7 0 chr11 67707373 67707520 -54136336 + B1_Mus1 SINE Alu 1 148 0 4 1101 193 29 59 0 chr11 67707521 67707555 -54136301 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 1101 422 229 9 60 chr11 67707801 67707917 -54135939 - PB1D9 SINE Alu -10 110 1 4 1101 25 0 0 0 chr11 67708040 67708065 -54135791 + AT_rich Low_complexity Low_complexity 1 25 0 4 1101 1431 60 43 0 chr11 67708153 67708337 -54135519 + B2_Mm2 SINE B2 2 193 -2 4 1101 213 39 0 0 chr11 67708528 67708554 -54135302 + (CCA)n Simple_repeat Simple_repeat 2 27 0 4 1101 315 0 0 0 chr11 67708572 67708607 -54135249 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1101 332 257 0 54 chr11 67708666 67708740 -54135116 - RSINE1 SINE B4 -17 148 79 4 1101 1249 224 64 39 chr11 67709174 67709532 -54134324 + MTEb LTR MaLR 1 367 -12 4 1101 625 241 7 21 chr11 67709641 67709785 -54134071 + B1F SINE Alu 1 142 -7 4 1101 234 0 0 0 chr11 67709888 67709914 -54133942 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 4 1101 246 220 0 0 chr11 67709937 67709987 -54133869 + PB1D10 SINE Alu 42 91 -26 4 1101 504 262 44 36 chr11 67710105 67710272 -54133584 + MIRb SINE MIR 13 199 -69 4 1101 514 286 7 21 chr11 67710272 67710415 -54133441 + B1F1 SINE Alu 1 141 -8 4 1101 213 39 0 0 chr11 67711141 67711167 -54132689 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 4 1101 322 143 26 91 chr11 67711341 67711418 -54132438 - MIR SINE MIR -183 79 8 4 1101 322 258 0 0 chr11 67711902 67711964 -54131892 + B1F SINE Alu 1 62 -87 4 1101 681 304 60 63 chr11 67712521 67712854 -54131002 + L1MB5 LINE L1 5577 5908 -266 4 1101 243 0 0 0 chr11 67712862 67712889 -54130967 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1101 1169 68 0 7 chr11 67712889 67713028 -54130828 - B1_Mus1 SINE Alu -9 139 1 4 1101 681 304 60 63 chr11 67713028 67713157 -54130699 + L1MB5 LINE L1 5909 6038 -136 4 1101 692 248 29 0 chr11 67713243 67713380 -54130476 - RSINE1 SINE B4 -21 144 4 4 1101 401 291 0 26 chr11 67713493 67713606 -54130250 + PB1D10 SINE Alu 1 110 -7 4 1101 210 71 0 0 chr11 67713607 67713635 -54130221 + (CAA)n Simple_repeat Simple_repeat 2 29 0 4 1101 216 0 0 0 chr11 67714666 67714690 -54129166 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1101 501 214 102 16 chr11 67714775 67714903 -54128953 - B1F SINE Alu -1 148 10 4 1101 397 333 38 8 chr11 67714784 67714917 -54128939 - ID_B1 SINE B4 -8 216 80 4 1101 207 362 28 42 chr11 67714931 67715075 -54128781 + L2b LINE L2 2994 3135 -240 4 1101 536 230 36 2 chr11 67715232 67715362 -54128494 + B3 SINE B2 1 136 -57 4 1101 432 305 98 92 chr11 67716051 67716235 -54127621 + B4 SINE B4 108 292 0 4 1101 27 49 0 0 chr11 67716295 67716336 -54127520 + AT_rich Low_complexity Low_complexity 1 41 0 4 1101 338 296 0 0 chr11 67716336 67716407 -54127449 + ID4 SINE ID 11 81 -2 4 1101 307 305 24 0 chr11 67716407 67716418 -54127438 + ID_B1 SINE B4 11 94 -130 4 1101 1220 48 0 0 chr11 67716648 67716794 -54127062 + B1_Mus2 SINE Alu 2 147 0 4 1101 285 288 147 28 chr11 67716804 67717015 -54126841 + L1MA6 LINE L1 5966 6201 -99 4 1101 538 334 47 44 chr11 67718267 67718586 -54125270 - MLT1D LTR MaLR -96 409 90 4 1101 192 349 75 37 chr11 67718910 67719044 -54124812 + L2c LINE L2 3192 3330 -57 4 1101 234 299 104 0 chr11 67719047 67719124 -54124732 + MTEa LTR MaLR 295 379 0 4 1101 225 254 0 0 chr11 67719222 67719293 -54124563 + T-rich Low_complexity Low_complexity 1 71 0 4 1101 422 347 0 8 chr11 67719332 67719457 -54124399 - ID_B1 SINE B4 -13 211 88 4 1101 295 243 79 26 chr11 67719705 67719781 -54124075 + ID4_ SINE ID 1 80 -3 4 1101 185 277 78 78 chr11 67719829 67719917 -54123939 + MIR SINE MIR 125 207 -55 4 1101 2419 178 9 7 chr11 67719917 67720336 -54123520 - MTC LTR MaLR 0 421 2 4 1101 525 32 0 0 chr11 67720336 67720399 -54123457 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 4 1101 185 277 78 78 chr11 67720399 67720438 -54123418 + MIR SINE MIR 208 252 -10 4 1101 883 265 20 49 chr11 67721129 67721375 -54122481 + RMER15 LTR ERVL 325 563 -12 4 1101 183 224 0 0 chr11 67721691 67721740 -54122116 - L2 LINE L2 -1109 2310 2262 4 1101 546 289 0 21 chr11 67721924 67721936 -54121920 + ID_B1 SINE B4 83 161 -63 4 1101 575 254 24 0 chr11 67721936 67722062 -54121794 + B1F SINE Alu 14 142 -7 4 1101 203 205 0 4 chr11 67722096 67722139 -54121717 + MIRm SINE MIR 224 267 -9 4 1101 849 184 0 0 chr11 67722935 67723103 -54120753 + GA-rich Low_complexity Low_complexity 2 169 0 4 1101 401 316 120 5 chr11 67723258 67723449 -54120407 + MER20 DNA MER1_type 7 219 0 4 1101 232 153 16 63 chr11 67723481 67723544 -54120312 + MIR SINE MIR 63 122 -140 4 1101 303 340 55 28 chr11 67723611 67723756 -54120100 + ORR1E LTR MaLR 1 149 -210 4 1101 546 306 88 9 chr11 67724192 67724359 -54119497 + ID_B1 SINE B4 86 273 -19 4 1101 261 0 0 0 chr11 67724512 67724541 -54119315 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1101 387 300 196 19 chr11 67724806 67725020 -54118836 + MLT1K LTR MaLR 338 589 -6 4 1101 602 197 172 0 chr11 67725121 67725243 -54118613 - B1_Mur1 SINE Alu -6 143 1 4 1101 288 313 40 109 chr11 67725390 67725418 -54118438 - B2_Mm2 SINE B2 -8 187 159 4 1101 504 45 0 0 chr11 67725418 67725485 -54118371 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 4 1101 297 0 0 0 chr11 67725486 67725519 -54118337 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1101 601 291 18 29 chr11 67725519 67725689 -54118167 - B3A SINE B2 -30 168 1 4 1101 245 29 29 0 chr11 67725759 67725793 -54118063 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1101 220 286 28 14 chr11 67725848 67725919 -54117937 + ID2 SINE ID 2 73 -10 4 1101 283 253 62 62 chr11 67726304 67726401 -54117455 + PB1D7 SINE Alu 24 120 0 4 1101 579 314 29 104 chr11 67726682 67726998 -54116858 + B4A SINE B4 1 292 0 4 1101 210 260 0 0 chr11 67727603 67727703 -54116153 + (TG)n Simple_repeat Simple_repeat 2 101 0 4 1101 384 224 59 0 chr11 67727704 67727789 -54116067 - B4A SINE B4 -202 90 1 4 1101 216 177 0 46 chr11 67728491 67728556 -54115300 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 4 1101 475 200 44 0 chr11 67728594 67728684 -54115172 - ID_B1 SINE B4 -26 198 105 4 1101 413 284 71 39 chr11 67728934 67729088 -54114768 + RSINE1 SINE B4 3 161 -4 4 1101 476 266 26 17 chr11 67729274 67729389 -54114467 + PB1D10 SINE Alu 1 116 -1 4 1101 273 232 72 0 chr11 67729389 67729458 -54114398 + ID SINE ID 2 75 -149 4 1101 351 317 0 14 chr11 67729543 67729608 -54114248 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1101 642 26 0 0 chr11 67729608 67729684 -54114172 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1101 351 317 0 14 chr11 67729684 67729762 -54114094 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1101 399 197 7 22 chr11 67729793 67729928 -54113928 + (TATG)n Simple_repeat Simple_repeat 3 135 0 4 1101 303 133 133 0 chr11 67729928 67729988 -54113868 - HAL1-3A_ME LINE L1 -840 2018 1951 4 1101 381 272 83 65 chr11 67730112 67730328 -54113528 + ID_B1 SINE B4 5 224 0 4 1101 25 31 0 0 chr11 67730328 67730360 -54113496 + AT_rich Low_complexity Low_complexity 1 32 0 4 1101 229 295 51 0 chr11 67730501 67730579 -54113277 + B4A SINE B4 88 169 -123 4 1101 225 0 0 0 chr11 67730603 67730628 -54113228 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1101 899 214 4 60 chr11 67730931 67731165 -54112691 - URR1B DNA MER1_type 0 225 5 5 1101 363 288 47 24 chr11 67731185 67731362 -54112494 + L1MA8 LINE L1 6121 6307 -5 5 1101 25 0 0 0 chr11 67731468 67731493 -54112363 + AT_rich Low_complexity Low_complexity 1 25 0 5 1101 771 131 57 21 chr11 67731494 67731634 -54112222 + B1_Mur3 SINE Alu 5 149 0 5 1101 189 147 0 0 chr11 67731647 67731681 -54112175 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1101 616 144 9 28 chr11 67731732 67731839 -54112017 + PB1D9 SINE Alu 16 120 0 5 1101 630 165 43 9 chr11 67732093 67732209 -54111647 + B3 SINE B2 1 120 -96 5 1101 633 82 47 0 chr11 67732210 67732295 -54111561 + B1_Mur3 SINE Alu 52 140 -9 5 1101 253 339 71 9 chr11 67733458 67733571 -54110285 - MIR SINE MIR -19 243 124 5 1101 387 293 8 41 chr11 67733656 67733777 -54110079 - B4A SINE B4 -78 214 98 5 1101 225 345 32 32 chr11 67733787 67733910 -54109946 - B4A SINE B4 -164 128 6 5 1101 188 182 0 0 chr11 67733910 67733943 -54109913 - MIR SINE MIR -228 34 2 5 1101 23 0 0 0 chr11 67735126 67735149 -54108707 + GC_rich Low_complexity Low_complexity 1 23 0 5 1101 21 0 0 0 chr11 67735399 67735420 -54108436 + GC_rich Low_complexity Low_complexity 1 21 0 5 1101 33 0 0 0 chr11 67735485 67735518 -54108338 + GC_rich Low_complexity Low_complexity 1 33 0 5 1101 24 32 0 0 chr11 67735744 67735775 -54108081 + GC_rich Low_complexity Low_complexity 1 31 0 5 1101 302 262 38 0 chr11 67737068 67737148 -54106708 - PB1D10 SINE Alu -27 90 8 5 1101 213 39 0 0 chr11 67737310 67737336 -54106520 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1101 867 184 29 18 chr11 67737355 67737526 -54106330 + B2_Mm2 SINE B2 1 173 -22 5 1101 446 325 63 0 chr11 67737552 67737678 -54106178 + RSINE1 SINE B4 21 154 -11 5 1101 23 0 0 0 chr11 67737682 67737705 -54106151 + AT_rich Low_complexity Low_complexity 1 23 0 5 1101 617 305 75 41 chr11 67737717 67738035 -54105821 + MTEb LTR MaLR 51 379 0 5 1101 774 97 0 34 chr11 67739132 67739250 -54104606 - B1_Mur3 SINE Alu -23 126 13 5 1101 180 0 0 0 chr11 67739255 67739275 -54104581 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1101 220 250 101 11 chr11 67739445 67739534 -54104322 + B4 SINE B4 71 167 -125 5 1101 529 174 40 47 chr11 67739460 67739595 -54104261 + PB1D10 SINE Alu 5 144 -6 5 1101 191 0 103 0 chr11 67740415 67740444 -54103412 + (CCCCG)n Simple_repeat Simple_repeat 3 34 0 5 1101 230 200 64 103 chr11 67740598 67740676 -54103180 - MER2 DNA MER2_type -171 174 100 5 1101 215 106 0 41 chr11 67741101 67741150 -54102706 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 5 1101 669 242 50 17 chr11 67741167 67741339 -54102517 + B3A SINE B2 2 181 -14 5 1101 312 301 28 42 chr11 67741600 67741742 -54102114 + MER5A DNA MER1_type 50 189 0 5 1101 408 40 0 0 chr11 67741960 67742010 -54101846 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 5 1101 305 294 76 0 chr11 67742332 67742424 -54101432 + MER5A1 DNA MER1_type 15 113 -53 5 1101 198 0 0 0 chr11 67742453 67742475 -54101381 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1101 811 189 76 17 chr11 67742480 67742652 -54101204 - B4A SINE B4 -12 280 99 5 1101 431 311 8 0 chr11 67742788 67742907 -54100949 + PB1 SINE Alu 1 120 -7 5 1101 1155 254 40 150 chr11 67743482 67743653 -54100203 + MTEa LTR MaLR 1 168 -211 5 1101 1262 181 0 40 chr11 67743653 67743878 -54099978 + B3 SINE B2 1 216 0 5 1101 1155 254 40 150 chr11 67743878 67744132 -54099724 + MTEa LTR MaLR 169 379 0 5 1101 823 213 42 33 chr11 67744910 67745124 -54098732 + B3 SINE B2 1 216 0 5 1101 939 139 0 20 chr11 67745691 67745838 -54098018 - B1_Mur4 SINE Alu -2 148 5 5 1101 272 227 91 26 chr11 67745927 67746004 -54097852 - PB1D7 SINE Alu -6 114 33 5 1101 623 220 118 12 chr11 67746180 67746341 -54097515 - B3A SINE B2 -20 178 1 5 1101 323 269 64 88 chr11 67746374 67746545 -54097311 + L2b LINE L2 2916 3082 -305 5 1101 227 309 137 41 chr11 67746599 67746818 -54097038 - L2a LINE L2 -247 3179 2940 5 1101 1158 110 35 6 chr11 67747062 67747235 -54096621 + B2_Mm2 SINE B2 16 193 -2 5 1101 189 324 101 11 chr11 67747267 67747445 -54096411 - L2a LINE L2 -691 2728 2535 5 1101 453 297 70 0 chr11 67747763 67747891 -54095965 - ID_B1 SINE B4 -6 218 82 5 1101 1364 75 43 0 chr11 67747926 67748113 -54095743 + B2_Mm2 SINE B2 1 195 0 5 1101 902 201 73 34 chr11 67748171 67748377 -54095479 + B3 SINE B2 3 216 0 5 1101 425 212 129 0 chr11 67748398 67748483 -54095373 + ID_B1 SINE B4 112 207 -17 5 1101 327 311 49 0 chr11 67748483 67748513 -54095343 + B1_Mur1 SINE Alu 43 149 0 5 1101 972 134 51 148 chr11 67748792 67749028 -54094828 + URR1A DNA MER1_type 6 218 -8 5 1101 280 93 0 44 chr11 67749267 67749312 -54094544 - ID_B1 SINE B4 -9 215 173 5 1101 270 206 71 29 chr11 67749312 67749330 -54094526 - PB1D7 SINE Alu -2 101 46 5 1101 309 315 64 21 chr11 67750321 67750415 -54093441 + RSINE1 SINE B4 54 151 -14 5 1101 315 0 0 0 chr11 67750422 67750457 -54093399 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1101 483 223 258 20 chr11 67750580 67750723 -54093133 + B3A SINE B2 3 181 -17 5 1101 396 0 0 0 chr11 67750723 67750767 -54093089 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1101 1111 50 12 24 chr11 67751228 67751474 -54092382 + (GAAA)n Simple_repeat Simple_repeat 1 242 0 5 1101 265 324 0 51 chr11 67751556 67751673 -54092183 + PB1D10 SINE Alu 2 112 -5 5 1101 334 318 73 20 chr11 67751799 67751950 -54091906 - RSINE1 SINE B4 -4 161 3 5 1101 929 169 125 10 chr11 67752065 67752257 -54091599 + B3 SINE B2 3 216 0 5 1101 759 157 44 7 chr11 67753046 67753181 -54090675 - B1_Mur1 SINE Alu -5 144 5 5 1101 566 168 122 0 chr11 67754128 67754235 -54089621 + PB1D9 SINE Alu 1 120 0 5 1101 256 239 153 14 chr11 67754692 67754764 -54089092 + ID4_ SINE ID 2 83 0 5 1101 193 104 40 40 chr11 67754764 67754814 -54089042 + A-rich Low_complexity Low_complexity 5 54 0 5 1101 261 269 51 0 chr11 67754978 67755056 -54088800 - L1MC LINE L1 -897 5249 5168 5 1101 2227 189 45 35 chr11 67755091 67755584 -54088272 + MT2A LTR ERVL 1 498 -35 5 1101 275 143 0 0 chr11 67755694 67755743 -54088113 + MT2A LTR ERVL 485 533 0 5 1101 1107 269 96 64 chr11 67755743 67756303 -54087553 - L1MC LINE L1 -1020 5126 4549 5 1101 715 115 8 8 chr11 67756303 67756434 -54087422 + (TC)n Simple_repeat Simple_repeat 1 131 0 5 1101 387 0 0 0 chr11 67756434 67756477 -54087379 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1101 396 245 40 30 chr11 67756483 67756584 -54087272 - ID_B1 SINE B4 -13 211 110 5 1101 279 241 116 0 chr11 67756594 67756706 -54087150 - L1MC LINE L1 -1583 4563 4439 5 1101 339 0 59 0 chr11 67756862 67756913 -54086943 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1101 1101 82 7 7 chr11 67756913 67757052 -54086804 - B1_Mm SINE Alu -7 140 1 5 1101 408 232 0 0 chr11 67758048 67758173 -54085683 + (CA)n Simple_repeat Simple_repeat 2 126 0 5 1101 504 234 0 0 chr11 67758208 67758375 -54085481 + (CA)n Simple_repeat Simple_repeat 2 168 0 5 1101 474 235 0 0 chr11 67758386 67758556 -54085300 + (CA)n Simple_repeat Simple_repeat 2 171 0 5 1101 222 37 0 0 chr11 67759968 67759995 -54083861 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 5 1101 632 157 102 8 chr11 67760260 67760388 -54083468 + B1_Mur2 SINE Alu 3 142 -7 5 1101 474 273 62 7 chr11 67760472 67760616 -54083240 - L1MA8 LINE L1 -26 6265 6114 5 1101 531 229 289 8 chr11 67760687 67760933 -54082923 + L1MA7 LINE L1 5741 6055 -236 5 1101 237 200 60 0 chr11 67760942 67760992 -54082864 - FAM SINE Alu -1 314 262 5 1101 640 189 64 24 chr11 67760949 67761074 -54082782 - ID_B1 SINE B4 0 224 95 5 1101 246 62 0 0 chr11 67761389 67761421 -54082435 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 1101 713 239 51 19 chr11 67762615 67762773 -54081083 + RSINE1 SINE B4 1 163 -2 5 1101 1446 74 26 0 chr11 67763307 67763497 -54080359 + B2_Mm2 SINE B2 1 195 0 5 1101 503 224 41 41 chr11 67763748 67763869 -54079987 + ID_B1 SINE B4 104 224 0 5 1101 261 139 0 0 chr11 67763927 67763970 -54079886 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 5 1101 295 290 0 0 chr11 67764031 67764100 -54079756 + tRNA-Ala-GCY_ tRNA tRNA 1 69 -6 5 137 1192 48 7 0 chr11 67764109 67764255 -54079601 - B1_Mus2 SINE Alu 0 147 1 5 1102 1949 184 30 38 chr11 67764604 67764977 -54078879 + ORR1D1 LTR MaLR 3 372 -2 5 1102 22 80 0 0 chr11 67765001 67765051 -54078805 + AT_rich Low_complexity Low_complexity 1 50 0 5 1102 272 289 13 0 chr11 67766146 67766222 -54077634 + MIRb SINE MIR 172 248 -20 5 1102 188 234 21 0 chr11 67766331 67766378 -54077478 + MER5B DNA MER1_type 75 122 -56 5 1102 568 154 33 0 chr11 67766552 67766643 -54077213 + B1_Mus1 SINE Alu 34 127 -21 5 1102 180 0 0 0 chr11 67766663 67766683 -54077173 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 5 1102 939 188 0 16 chr11 67766701 67766963 -54076893 + GA-rich Low_complexity Low_complexity 1 257 0 5 1102 407 285 99 0 chr11 67767856 67768007 -54075849 - MER5A1 DNA MER1_type 0 166 1 5 1102 338 247 85 170 chr11 67768067 67768267 -54075589 + RLTR16 LTR ERVK 32 214 -291 5 1102 762 240 47 30 chr11 67768421 67768657 -54075199 - L1MB1 LINE L1 -303 5886 5647 5 1102 494 147 10 59 chr11 67768665 67768766 -54075090 + MTC LTR MaLR 1 96 -325 5 1102 1265 76 35 0 chr11 67768768 67768939 -54074917 + B2_Mm1t SINE B2 3 179 -14 5 1102 230 220 0 0 chr11 67768981 67769031 -54074825 + B2_Mm2 SINE B2 47 96 -99 5 1102 249 128 0 41 chr11 67769031 67769080 -54074776 + B2_Mm1t SINE B2 138 184 -9 5 1102 2154 128 19 3 chr11 67769083 67769403 -54074453 + MTC LTR MaLR 86 410 -11 5 1102 969 214 83 30 chr11 67769482 67769618 -54074238 - L1M2 LINE L1 -720 5592 5458 5 1102 2459 81 31 103 chr11 67769618 67770005 -54073851 + RLTR10D LTR ERVK 1 359 0 6 1102 969 214 83 30 chr11 67770005 67770133 -54073723 - L1M2 LINE L1 -855 5457 5314 5 1102 647 230 195 0 chr11 67770137 67770337 -54073519 + L1MA9 LINE L1 5857 6095 -217 6 1102 1583 196 50 50 chr11 67770337 67770676 -54073180 + MTD LTR MaLR 1 339 -80 6 1102 769 214 104 45 chr11 67770880 67770917 -54072939 - B3 SINE B2 -3 213 181 6 1102 234 0 0 0 chr11 67770917 67770943 -54072913 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6 1102 1209 87 7 0 chr11 67770943 67771106 -54072750 - B2_Mm2 SINE B2 -36 180 1 6 1102 216 0 0 0 chr11 67771115 67771139 -54072717 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1102 430 167 14 14 chr11 67771172 67771245 -54072611 - ID4 SINE ID -10 73 1 6 1102 705 236 0 7 chr11 67771479 67771628 -54072228 + B1_Mur2 SINE Alu 1 148 -1 6 1102 183 156 0 0 chr11 67771637 67771669 -54072187 + A-rich Low_complexity Low_complexity 4 35 0 6 1102 1323 93 22 0 chr11 67771780 67771962 -54071894 + B2_Mm1a SINE B2 1 186 -7 6 1102 853 64 8 8 chr11 67772014 67772140 -54071716 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 6 1102 702 230 0 7 chr11 67772140 67772278 -54071578 - B1_Mur1 SINE Alu -11 138 2 6 1102 268 198 75 75 chr11 67772385 67772478 -54071378 + L1M5 LINE L1 4927 5019 -1127 6 1102 413 369 70 37 chr11 67772519 67772789 -54071067 + L1M5 LINE L1 5114 5392 -754 6 1102 1077 90 0 0 chr11 67772808 67772953 -54070903 + B2_Mm1t SINE B2 49 193 0 6 1102 293 284 21 0 chr11 67772962 67773057 -54070799 + (TTGGGG)n Simple_repeat Simple_repeat 6 102 0 6 1102 1682 169 26 81 chr11 67773063 67773094 -54070762 + ORR1D1 LTR MaLR 1 17 -357 6 1102 1222 40 0 20 chr11 67773094 67773245 -54070611 + B1_Mus1 SINE Alu 1 148 0 6 1102 1682 169 26 81 chr11 67773245 67773568 -54070288 + ORR1D1 LTR MaLR 18 336 -38 6 1102 2415 129 10 44 chr11 67773568 67773980 -54069876 + RMER10B LTR ERVL 1 398 0 6 1102 1682 169 26 81 chr11 67773980 67774005 -54069851 + ORR1D1 LTR MaLR 337 360 -14 6 1102 3614 248 99 48 chr11 67774014 67775524 -54068332 + ORR1D1-int LTR MaLR 1 1509 0 6 1102 1037 204 227 13 chr11 67775524 67775687 -54068169 + ORR1D1 LTR MaLR 1 176 -198 6 1102 450 0 0 0 chr11 67775687 67775737 -54068119 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1102 1037 204 227 13 chr11 67775737 67775881 -54067975 + ORR1D1 LTR MaLR 177 373 -1 6 1102 246 263 13 26 chr11 67775902 67775980 -54067876 - MLT1N2 LTR MaLR -6 556 480 6 1102 862 257 117 31 chr11 67776160 67776417 -54067439 - B4A SINE B4 0 292 14 6 1102 1142 112 78 11 chr11 67776485 67776645 -54067211 + B2_Mm2 SINE B2 3 175 -20 6 1102 199 0 65 0 chr11 67776645 67776676 -54067180 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 6 1102 1142 112 78 11 chr11 67776676 67776695 -54067161 + B2_Mm2 SINE B2 176 194 -1 6 1102 351 44 0 0 chr11 67776720 67776765 -54067091 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1102 683 271 30 55 chr11 67776896 67777095 -54066761 - MER58A DNA MER1_type -12 212 19 6 1102 369 0 0 0 chr11 67777358 67777399 -54066457 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1102 439 269 117 50 chr11 67777697 67777877 -54065979 + B3A SINE B2 2 193 -5 6 1102 769 237 70 5 chr11 67777880 67778067 -54065789 + B3 SINE B2 1 199 -17 6 1102 438 195 12 0 chr11 67778169 67778251 -54065605 + B3 SINE B2 3 85 -131 6 1102 307 113 16 16 chr11 67779540 67779603 -54064253 + (TATG)n Simple_repeat Simple_repeat 2 64 0 6 1102 312 196 0 0 chr11 67779606 67779662 -54064194 - B1F SINE Alu -93 56 1 6 1102 311 186 67 34 chr11 67781139 67781228 -54062628 - L1ME4a LINE L1 -261 5863 5772 6 1102 299 200 0 32 chr11 67781233 67781295 -54062561 + BC1_Mm scRNA scRNA 12 71 -81 6 1102 1223 90 0 6 chr11 67782509 67782688 -54061168 - B2_Mm2 SINE B2 -2 193 16 6 1102 751 196 133 6 chr11 67782711 67782891 -54060965 - B3 SINE B2 0 216 14 6 1102 325 200 117 141 chr11 67783097 67783225 -54060631 - B1_Mm SINE Alu -21 126 2 6 1102 189 0 0 0 chr11 67783670 67783691 -54060165 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1102 408 249 310 35 chr11 67783699 67783928 -54059928 - B4A SINE B4 0 292 1 6 1102 243 188 0 0 chr11 67784136 67784184 -54059672 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 6 1102 423 217 130 0 chr11 67784184 67784299 -54059557 - B1F1 SINE Alu -7 142 13 6 1102 252 0 0 0 chr11 67784556 67784584 -54059272 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 6 1102 354 256 132 0 chr11 67784584 67784705 -54059151 - B1F SINE Alu -12 137 1 6 1102 209 261 11 22 chr11 67784823 67784913 -54058943 + (TTTG)n Simple_repeat Simple_repeat 2 90 0 6 1102 959 225 47 9 chr11 67784915 67785126 -54058730 - B4A SINE B4 -73 219 1 6 1102 26 30 0 0 chr11 67785596 67785629 -54058227 + AT_rich Low_complexity Low_complexity 1 33 0 6 1102 218 81 27 0 chr11 67785753 67785790 -54058066 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1102 318 200 167 48 chr11 67785859 67785985 -54057871 - B1F2 SINE Alu -2 147 7 6 1102 276 267 56 0 chr11 67786302 67786392 -54057464 + L3 LINE CR1 4017 4111 -378 6 1102 466 259 161 0 chr11 67787216 67787378 -54056478 - ID_B1 SINE B4 -21 203 16 6 1102 473 213 81 16 chr11 67787590 67787714 -54056142 + B1F1 SINE Alu 1 132 -17 6 1102 839 158 13 0 chr11 67788627 67788779 -54055077 + URR1A DNA MER1_type 72 225 -1 6 1102 321 26 0 0 chr11 67788998 67789036 -54054820 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1102 278 261 77 0 chr11 67789090 67789155 -54054701 - ID4_ SINE ID -9 74 5 6 1102 185 346 26 0 chr11 67789409 67789487 -54054369 - MIRc SINE MIR -165 103 24 6 1102 598 211 147 34 chr11 67789715 67789892 -54053964 - B3A SINE B2 0 198 2 6 1102 603 217 21 14 chr11 67789949 67790089 -54053767 - B1_Mur1 SINE Alu -7 142 2 6 1102 353 265 130 20 chr11 67790430 67790530 -54053326 - PB1D7 SINE Alu -7 113 3 6 1102 391 179 95 0 chr11 67790723 67790807 -54053049 - B3 SINE B2 -124 92 1 6 1102 222 37 0 0 chr11 67790817 67790844 -54053012 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1102 242 292 0 0 chr11 67791592 67791657 -54052199 + RSINE1 SINE B4 4 68 -97 6 1102 979 147 136 5 chr11 67791795 67791986 -54051870 + B3 SINE B2 1 216 0 6 1102 22 0 0 0 chr11 67791993 67792015 -54051841 + AT_rich Low_complexity Low_complexity 1 22 0 6 1102 284 282 0 0 chr11 67792177 67792262 -54051594 - RSINE1 SINE B4 -71 94 10 6 1102 573 76 0 0 chr11 67793725 67793804 -54050052 + (CATA)n Simple_repeat Simple_repeat 2 80 0 6 1102 969 90 11 22 chr11 67794017 67794198 -54049658 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1102 345 220 10 71 chr11 67794823 67794921 -54048935 + B4A SINE B4 2 93 -199 6 1102 209 280 0 0 chr11 67795026 67795076 -54048780 + (CATG)n Simple_repeat Simple_repeat 3 52 0 6 1102 452 239 151 27 chr11 67796299 67796445 -54047411 - RSINE1 SINE B4 0 165 2 6 1102 189 0 0 0 chr11 67796588 67796609 -54047247 + (GAAA)n Simple_repeat Simple_repeat 4 24 0 6 1102 365 164 0 14 chr11 67796611 67796685 -54047171 + GA-rich Low_complexity Low_complexity 3 75 0 6 1102 661 201 110 139 chr11 67796814 67796843 -54047013 - B4A SINE B4 0 292 276 6 1102 387 0 0 0 chr11 67796843 67796886 -54046970 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1102 661 201 110 139 chr11 67796886 67797157 -54046699 - B4A SINE B4 -17 275 1 6 1102 359 190 150 0 chr11 67797225 67797327 -54046529 + PB1D10 SINE Alu 2 120 -7 6 1102 288 324 83 0 chr11 67799335 67799443 -54044413 + PB1D7 SINE Alu 2 118 -2 6 1102 281 208 14 0 chr11 67799443 67799515 -54044341 + GA-rich Low_complexity Low_complexity 1 73 0 6 1102 557 198 18 9 chr11 67800005 67800117 -54043739 - B1F2 SINE Alu -6 143 31 6 1102 222 37 0 0 chr11 67800461 67800488 -54043368 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1102 1086 86 0 0 chr11 67800488 67800627 -54043229 - B1_Mus1 SINE Alu -9 139 1 6 1102 548 279 48 27 chr11 67800635 67800648 -54043208 - B3A SINE B2 -6 192 182 6 1102 705 56 0 0 chr11 67800648 67800738 -54043118 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 1102 548 279 48 27 chr11 67800738 67800912 -54042944 - B3A SINE B2 -17 181 1 6 1102 27 0 0 0 chr11 67803125 67803152 -54040704 + AT_rich Low_complexity Low_complexity 1 27 0 6 1102 886 208 47 0 chr11 67803170 67803362 -54040494 + 7SLRNA srpRNA srpRNA 1 201 -113 6 1102 1242 41 7 0 chr11 67803502 67803649 -54040207 - B1_Mus1 SINE Alu 0 148 1 6 1102 754 289 128 17 chr11 67804733 67805141 -54038715 + L1M2 LINE L1 4709 5161 -982 6 1102 269 282 106 71 chr11 67805280 67805641 -54038215 + L1M2 LINE L1 5280 5652 -645 6 1102 832 84 221 55 chr11 67805641 67805804 -54038052 + B2_Mm2 SINE B2 2 191 -4 6 1102 1078 83 7 0 chr11 67805805 67805950 -54037906 + B1_Mm SINE Alu 2 147 0 6 1102 252 296 113 108 chr11 67805950 67806136 -54037720 + L1M2 LINE L1 5644 5834 -466 6 1102 718 120 0 0 chr11 67807224 67807332 -54036524 - B1_Mus1 SINE Alu -13 135 28 6 1102 459 218 22 82 chr11 67807358 67807493 -54036363 + RSINE1 SINE B4 3 129 -36 6 1102 361 280 32 0 chr11 67807761 67807854 -54036002 - B1_Mur3 SINE Alu -37 112 17 6 1102 1148 96 0 0 chr11 67807959 67808105 -54035751 - B1_Mus2 SINE Alu -1 146 1 6 1102 189 0 0 0 chr11 67808219 67808240 -54035616 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1102 572 281 59 117 chr11 67808246 67808536 -54035320 - B4A SINE B4 -19 273 1 6 1102 782 152 169 79 chr11 67808555 67808733 -54035123 - B3A SINE B2 -3 195 2 6 1102 266 382 13 0 chr11 67809325 67809482 -54034374 + (CA)n Simple_repeat Simple_repeat 2 160 0 6 1102 799 249 18 22 chr11 67809711 67809933 -54033923 - ID_B1 SINE B4 -3 221 1 6 1102 327 256 0 36 chr11 67810138 67810225 -54033631 - ID4_ SINE ID -69 83 6 6 1102 993 214 22 0 chr11 67811255 67811437 -54032419 + B3 SINE B2 1 186 -30 6 1102 351 0 0 0 chr11 67811437 67811476 -54032380 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1102 483 313 191 35 chr11 67811478 67812482 -54031374 + L1ME3A LINE L1 4408 5573 -600 6 1102 511 263 164 33 chr11 67812524 67812823 -54031033 + L1ME3A LINE L1 5692 6029 -144 6 1102 466 232 156 74 chr11 67812823 67813079 -54030777 + B4A SINE B4 2 278 -14 6 1102 1452 44 0 0 chr11 67813594 67813774 -54030082 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1102 564 89 0 0 chr11 67813774 67813853 -54030003 + (TCC)n Simple_repeat Simple_repeat 3 81 0 7 1102 280 250 120 0 chr11 67814005 67814097 -54029759 - ID_B1 SINE B4 -16 208 106 7 1102 253 327 29 0 chr11 67814413 67814517 -54029339 - PB1D10 SINE Alu -10 107 1 7 1102 257 268 28 0 chr11 67814458 67814529 -54029327 - B4A SINE B4 -146 146 74 7 1102 1257 41 0 0 chr11 67814544 67814690 -54029166 + B1_Mm SINE Alu 2 147 0 7 1102 22 0 0 0 chr11 67814889 67814911 -54028945 + AT_rich Low_complexity Low_complexity 1 22 0 7 1102 211 0 88 0 chr11 67815023 67815057 -54028799 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 7 1102 231 343 10 10 chr11 67815188 67815291 -54028565 - L1MC LINE L1 -2344 5538 5436 7 1102 1149 222 6 94 chr11 67815538 67815856 -54028000 - B4A SINE B4 -2 290 1 7 1102 180 0 0 0 chr11 67816135 67816155 -54027701 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1102 1142 45 0 0 chr11 67816638 67816772 -54027084 + B1_Mus1 SINE Alu 2 135 -13 7 1102 279 0 0 0 chr11 67816772 67816803 -54027053 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 1102 317 268 118 0 chr11 67816894 67817021 -54026835 - B1F1 SINE Alu -3 146 5 7 1102 228 299 149 53 chr11 67817309 67817517 -54026339 + Tigger8 DNA MER2_type 51 278 -388 7 1102 955 88 0 114 chr11 67818176 67818342 -54025514 + B1_Mus2 SINE Alu 1 147 0 7 1102 1126 82 0 6 chr11 67818366 67818525 -54025331 + B2_Mm2 SINE B2 4 161 -34 7 1102 195 42 0 0 chr11 67818525 67818549 -54025307 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 7 1102 234 0 0 0 chr11 67818753 67818779 -54025077 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 7 1102 218 268 33 67 chr11 67818897 67819017 -54024839 + BC1_Mm scRNA scRNA 14 129 -23 7 1102 1347 69 0 0 chr11 67820422 67820712 -54023144 + (CA)n Simple_repeat Simple_repeat 1 290 0 7 1102 581 348 10 51 chr11 67821235 67821547 -54022309 - L2c LINE L2 -42 3345 3047 7 1102 273 119 0 0 chr11 67821902 67821944 -54021912 + (CAG)n Simple_repeat Simple_repeat 3 44 0 7 1102 21 36 0 0 chr11 67822179 67822207 -54021649 + AT_rich Low_complexity Low_complexity 1 28 0 7 1102 207 0 0 0 chr11 67822777 67822800 -54021056 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1102 567 40 0 0 chr11 67822800 67822873 -54020983 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1102 22 80 0 0 chr11 67824437 67824487 -54019369 + AT_rich Low_complexity Low_complexity 1 50 0 7 1102 315 0 0 0 chr11 67825147 67825182 -54018674 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1102 273 250 43 98 chr11 67825778 67825942 -54017914 - L1ME1 LINE L1 -189 6163 6009 7 1102 248 272 147 35 chr11 67826183 67826381 -54017475 - L1ME1 LINE L1 -999 5320 5101 7 1102 252 226 0 0 chr11 67826458 67826520 -54017336 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1102 355 322 148 19 chr11 67826625 67827209 -54016647 - L1ME1 LINE L1 -1437 4882 4235 7 1102 228 163 0 0 chr11 67827383 67827426 -54016430 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1102 514 277 13 7 chr11 67827439 67827588 -54016268 - RSINE1 SINE B4 -15 150 1 7 1102 1063 273 61 6 chr11 67827642 67827955 -54015901 + MER58B DNA MER1_type 4 333 -8 7 1102 485 229 218 48 chr11 67828139 67828451 -54015405 - L1ME1 LINE L1 -6016 384 20 7 1102 2419 87 12 9 chr11 67829103 67829429 -54014427 - ORR1A2 LTR MaLR 0 327 1 7 1102 247 282 14 14 chr11 67829886 67829958 -54013898 - ID4 SINE ID -11 72 1 7 1102 720 278 84 14 chr11 67830165 67830380 -54013476 - B4 SINE B4 -18 274 45 7 1102 773 242 75 30 chr11 67830509 67830709 -54013147 - B3A SINE B2 0 216 8 7 1102 537 282 96 30 chr11 67830716 67831114 -54012742 - L1MC5 LINE L1 -255 7706 7283 7 1102 1021 268 107 23 chr11 67831266 67831698 -54012158 - MLT1D LTR MaLR -10 495 28 7 1102 237 139 0 0 chr11 67831708 67831751 -54012105 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1102 486 196 167 42 chr11 67833226 67833370 -54010486 - MTE2a LTR MaLR 0 379 218 7 1102 462 297 113 25 chr11 67833543 67833702 -54010154 - MTE2a LTR MaLR -206 173 1 7 1102 244 270 15 60 chr11 67833993 67834060 -54009796 + RSINE1 SINE B4 90 153 -12 7 1102 378 61 0 0 chr11 67834288 67834337 -54009519 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1102 5532 39 1 15 chr11 67834643 67835314 -54008542 - L1Md_F2 LINE L1 0 6582 5921 7 1102 470 305 8 17 chr11 67835398 67835518 -54008338 - B1F2 SINE Alu -29 120 2 7 1102 195 374 12 0 chr11 67835987 67836070 -54007786 - L2 LINE L2 -934 2485 2402 7 1102 287 286 0 0 chr11 67837070 67837140 -54006716 + MER5B DNA MER1_type 2 71 -107 7 1102 1139 288 94 19 chr11 67837144 67837537 -54006319 - MLT1D LTR MaLR 0 505 114 7 1102 386 151 0 14 chr11 67838877 67838951 -54004905 + GA-rich Low_complexity Low_complexity 3 75 0 7 1102 256 293 101 30 chr11 67839011 67839180 -54004676 + MLT1D LTR MaLR 180 360 -145 7 1102 856 223 53 29 chr11 67839405 67839613 -54004243 - B3 SINE B2 -3 213 1 7 1102 774 232 84 0 chr11 67839799 67839989 -54003867 - B3 SINE B2 -8 208 3 7 1102 491 250 34 20 chr11 67840207 67840354 -54003502 + RSINE1 SINE B4 3 151 -14 7 1102 216 0 0 0 chr11 67840537 67840561 -54003295 + (TC)n Simple_repeat Simple_repeat 1 24 0 7 1102 645 294 107 55 chr11 67840685 67841160 -54002696 - Charlie1 DNA MER1_type -5 2776 2277 7 1102 1731 79 0 0 chr11 67841484 67841699 -54002157 + Lx2 LINE L1 6429 6643 -354 7 1102 1208 147 81 0 chr11 67841699 67841910 -54001946 + Lx LINE L1 6427 6654 0 7 1102 238 259 19 0 chr11 67842067 67842121 -54001735 - AluF_3 SINE Alu -116 195 141 7 1102 617 154 16 49 chr11 67842165 67842288 -54001568 + PB1D9 SINE Alu 2 120 0 7 1102 288 70 0 0 chr11 67843158 67843201 -54000655 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 7 1102 1222 233 93 18 chr11 67843426 67843758 -54000098 + MLT1B LTR MaLR 1 357 -33 7 1102 1514 40 0 0 chr11 67843825 67843998 -53999858 - B2_Mm1a SINE B2 -19 174 2 7 1102 537 16 0 0 chr11 67844630 67844692 -53999164 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1102 1092 326 113 56 chr11 67845264 67845920 -53997936 - MER21B LTR ERV1 -158 705 13 7 1102 405 0 0 0 chr11 67846274 67846319 -53997537 + (CACAG)n Simple_repeat Simple_repeat 3 47 0 7 1102 291 341 97 15 chr11 67846461 67846595 -53997261 - MER82 DNA MER2_type -61 592 448 7 1102 364 295 43 43 chr11 67846650 67846767 -53997089 + MTE2b LTR MaLR 1 117 -262 7 1102 1511 249 48 22 chr11 67846950 67847364 -53996492 - MER68 LTR ERVL -75 488 64 7 1102 255 222 19 0 chr11 67847392 67847446 -53996410 - B1_Mur4 SINE Alu -90 60 6 7 1102 320 240 75 98 chr11 67847668 67847829 -53996027 + MIRb SINE MIR 114 276 0 7 1102 553 258 58 26 chr11 67849276 67849431 -53994425 - RSINE1 SINE B4 -2 163 4 7 1102 234 315 129 47 chr11 67849744 67849914 -53993942 + MIRb SINE MIR 16 199 -69 7 1102 1195 77 83 0 chr11 67851086 67851255 -53992601 - B2_Mm2 SINE B2 -11 184 2 7 1102 186 71 0 0 chr11 67851267 67851295 -53992561 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1102 280 236 69 0 chr11 67851611 67851683 -53992173 - MIRc SINE MIR -119 149 73 7 1102 251 304 108 11 chr11 67853215 67853308 -53990548 - MIR SINE MIR -68 194 93 7 1102 623 233 86 86 chr11 67853367 67853388 -53990468 - B3A SINE B2 0 198 188 7 1102 411 21 0 0 chr11 67853388 67853436 -53990420 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1102 623 233 86 86 chr11 67853436 67853611 -53990245 - B3A SINE B2 -11 187 2 7 1102 294 73 0 0 chr11 67853627 67853668 -53990188 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1102 622 286 64 64 chr11 67853671 67853951 -53989905 - B4A SINE B4 -9 283 4 7 1102 291 28 0 0 chr11 67854017 67854053 -53989803 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 7 1102 649 266 7 16 chr11 67854054 67854206 -53989650 - ID_B1 SINE B4 -46 246 93 7 1102 267 279 198 73 chr11 67854507 67854638 -53989218 + LTR50 LTR ERVL 1 154 -641 7 1102 1176 157 18 52 chr11 67854638 67854867 -53988989 + URR1B DNA MER1_type 1 221 -4 7 1102 267 279 198 73 chr11 67854867 67854982 -53988874 + LTR50 LTR ERVL 155 278 -517 7 1102 383 205 34 27 chr11 67855124 67855232 -53988624 + LTR50 LTR ERVL 660 793 -2 7 1102 686 331 101 31 chr11 67855562 67855849 -53988007 - MER2 DNA MER2_type 0 345 39 7 1102 202 275 116 0 chr11 67855944 67856013 -53987843 + MIRb SINE MIR 155 231 -37 7 1102 21 36 0 0 chr11 67856090 67856118 -53987738 + AT_rich Low_complexity Low_complexity 1 28 0 7 1102 246 333 47 23 chr11 67856369 67856455 -53987401 + MLT1D LTR MaLR 2 89 -538 7 1102 283 234 73 18 chr11 67856459 67856568 -53987288 + PB1D10 SINE Alu 3 117 0 7 1102 743 286 5 35 chr11 67856743 67856942 -53986914 + B3A SINE B2 6 198 0 7 1102 577 276 85 35 chr11 67857034 67857233 -53986623 + MLT1D LTR MaLR 297 505 0 7 1102 322 327 100 0 chr11 67857233 67857382 -53986474 + MLT1L LTR MaLR 437 600 -10 7 1102 311 200 17 0 chr11 67857877 67857937 -53985919 + LFSINE_Vert SINE SINE 105 165 -294 7 1102 2999 149 75 6 chr11 67858649 67859167 -53984689 - Lx5 LINE L1 0 7050 6497 7 1102 459 0 0 0 chr11 67859414 67859465 -53984391 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1102 1001 262 118 9 chr11 67859581 67859928 -53983928 + Lx8 LINE L1 6826 7210 -263 7 1102 247 344 113 69 chr11 67859930 67860133 -53983723 - ORR1E LTR MaLR -128 231 20 7 1102 180 0 0 0 chr11 67860972 67860992 -53982864 + (TAA)n Simple_repeat Simple_repeat 1 20 0 7 1102 514 333 74 7 chr11 67861130 67861429 -53982427 - L1ME1 LINE L1 -114 6065 5747 7 1102 837 331 53 8 chr11 67861659 67861903 -53981953 - B4 SINE B4 -37 255 1 7 1102 568 273 78 6 chr11 67862021 67862187 -53981669 + MER82 DNA MER2_type 2 179 -474 7 1102 690 238 0 13 chr11 67862255 67862404 -53981452 + B1_Mur1 SINE Alu 1 147 -2 8 1102 293 255 92 28 chr11 67863495 67863604 -53980252 - L2b LINE L2 -6 3420 3276 8 1102 21 36 0 0 chr11 67866023 67866051 -53977805 + AT_rich Low_complexity Low_complexity 1 28 0 8 1102 846 155 21 21 chr11 67866068 67866213 -53977643 + B1_Mur2 SINE Alu 3 147 -2 8 1102 2953 241 60 91 chr11 67866352 67866836 -53977020 - Lx8 LINE L1 -223 7250 6750 8 1102 375 158 0 0 chr11 67866836 67866893 -53976963 + 5S rRNA rRNA 1 57 -64 8 1102 2953 241 60 91 chr11 67866893 67867229 -53976627 - Lx8 LINE L1 -223 6749 6401 8 1102 1063 234 115 66 chr11 67867256 67867625 -53976231 - MTE2a LTR MaLR 0 419 26 8 1102 796 218 0 31 chr11 67867633 67867794 -53976062 - Lx8 LINE L1 -1116 6357 6202 8 1102 439 243 109 77 chr11 67867868 67868024 -53975832 - RSINE1 SINE B4 0 165 5 8 1102 476 279 28 14 chr11 67868335 67868477 -53975379 + B1F SINE Alu 1 144 -5 8 1102 204 385 0 20 chr11 67868516 67868614 -53975242 - L2 LINE L2 -642 2777 2682 8 1102 196 236 118 59 chr11 67869121 67869256 -53974600 - L2b LINE L2 -279 3096 2954 8 1102 233 321 7 101 chr11 67870091 67870240 -53973616 + B3A SINE B2 49 183 -15 8 1102 435 19 0 0 chr11 67870302 67870354 -53973502 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1102 703 295 61 75 chr11 67870520 67870813 -53973043 + MER58B DNA MER1_type 26 314 -27 8 1102 181 222 28 0 chr11 67870829 67870865 -53972991 - MER5A DNA MER1_type -30 159 123 8 1102 745 244 45 68 chr11 67871495 67871529 -53972327 - B3 SINE B2 0 216 190 8 1102 492 18 0 0 chr11 67871529 67871586 -53972270 + (CCTG)n Simple_repeat Simple_repeat 2 58 0 8 1102 745 244 45 68 chr11 67871586 67871771 -53972085 - B3 SINE B2 -27 189 2 8 1102 760 238 40 0 chr11 67872833 67872984 -53970872 + RSINE1 SINE B4 8 164 -1 8 1102 240 273 12 83 chr11 67873178 67873262 -53970594 + ID4_ SINE ID 1 78 -5 8 1102 253 296 61 17 chr11 67873278 67873457 -53970399 + L1MA5 LINE L1 6106 6298 -2 8 1102 272 146 122 92 chr11 67873662 67873760 -53970096 - L1MA8 LINE L1 -6 6285 6185 8 1102 435 56 28 14 chr11 67873782 67873854 -53970002 + (TA)n Simple_repeat Simple_repeat 2 74 0 8 1102 920 132 0 0 chr11 67873854 67873990 -53969866 - B1_Mus2 SINE Alu -3 144 9 8 1102 442 212 55 96 chr11 67873886 67874032 -53969824 - MT2B LTR ERVL -337 264 125 8 1102 1247 184 14 19 chr11 67874647 67874858 -53968998 - B3 SINE B2 -6 210 1 8 1102 311 0 0 25 chr11 67875097 67875137 -53968719 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1102 1183 37 0 0 chr11 67875137 67875273 -53968583 - B1_Mm SINE Alu -10 137 2 8 1102 279 0 0 0 chr11 67875835 67875866 -53967990 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1102 385 219 14 0 chr11 67875866 67875931 -53967925 - tRNA-Ala-GCA tRNA tRNA -7 68 3 8 1102 963 230 200 22 chr11 67877479 67877799 -53966057 - MTEb LTR MaLR 0 379 3 8 1102 865 154 36 67 chr11 67878529 67878724 -53965132 + B2_Mm2 SINE B2 2 190 -5 8 1102 480 304 52 0 chr11 67878946 67879081 -53964775 + MER33 DNA MER1_type 11 152 -172 8 1102 235 262 49 0 chr11 67879097 67879158 -53964698 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 8 1102 275 282 94 19 chr11 67879149 67879308 -53964548 + MER33 DNA MER1_type 153 323 -1 8 1102 449 245 5 151 chr11 67879308 67879365 -53964491 + MT2B LTR ERVL 121 149 -452 8 1102 782 159 16 0 chr11 67879365 67879491 -53964365 + B1_Mur4 SINE Alu 1 128 -22 8 1102 506 346 12 18 chr11 67879939 67880104 -53963752 + Tigger9a DNA Tigger 567 730 -2 8 1102 539 243 62 9 chr11 67880287 67880399 -53963457 + B3A SINE B2 1 118 -80 8 1102 620 321 90 29 chr11 67880410 67880721 -53963135 + MER2 DNA MER2_type 16 345 0 8 1102 1177 68 7 0 chr11 67882179 67882326 -53961530 - B1_Mus1 SINE Alu 0 148 1 8 1102 504 237 23 0 chr11 67883529 67883644 -53960212 - B1F SINE Alu -1 119 1 8 1102 463 285 97 22 chr11 67883749 67884018 -53959838 + L1MA6 LINE L1 6007 6295 -5 8 1102 225 295 112 24 chr11 67884372 67884497 -53959359 - MER58A DNA MER1_type -1 223 88 8 1102 658 308 12 20 chr11 67884497 67884754 -53959102 + L1MB5 LINE L1 5779 6024 -335 8 1102 294 267 129 0 chr11 67884889 67885005 -53958851 + L1MB5 LINE L1 6036 6166 -8 8 1102 343 299 53 107 chr11 67885038 67885169 -53958687 - MER58A DNA MER1_type -97 127 4 8 1102 483 18 0 0 chr11 67885622 67885678 -53958178 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1102 209 268 0 0 chr11 67885725 67885766 -53958090 + polypyrimidine Low_complexity Low_complexity 3 43 0 8 1102 280 350 0 0 chr11 67885873 67885953 -53957903 + ID4_ SINE ID 3 82 -1 8 1102 233 333 0 0 chr11 67886827 67886887 -53956969 + MIRm SINE MIR 217 276 0 8 1102 692 159 78 16 chr11 67887681 67887809 -53956047 + B1_Mus2 SINE Alu 3 138 -9 8 1102 212 0 0 35 chr11 67887809 67887838 -53956018 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 8 1102 650 192 57 6 chr11 67888835 67888992 -53954864 - MER5A1 DNA MER1_type -1 165 1 8 1102 186 43 0 0 chr11 67889129 67889152 -53954704 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1102 709 192 47 20 chr11 67889909 67890058 -53953798 + B3 SINE B2 1 153 -63 8 1102 297 0 0 0 chr11 67890067 67890100 -53953756 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1102 587 203 103 22 chr11 67890437 67890573 -53953283 - B1_Mur1 SINE Alu -1 148 2 8 1102 277 258 45 61 chr11 67890732 67890864 -53952992 - HAL1 LINE L1 -369 2138 2009 8 1102 1030 81 15 0 chr11 67891428 67891564 -53952292 - B1_Mus2 SINE Alu -9 138 1 8 1102 218 189 0 0 chr11 67891685 67891722 -53952134 + (CATG)n Simple_repeat Simple_repeat 3 39 0 8 1102 321 26 0 0 chr11 67891823 67891861 -53951995 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1102 1074 216 141 21 chr11 67892424 67892755 -53951101 - MTD LTR MaLR -14 405 6 8 1102 300 236 92 28 chr11 67892777 67892886 -53950970 + B1_Mur1 SINE Alu 16 131 -18 8 1102 338 196 40 40 chr11 67892950 67893051 -53950805 + B1_Mur1 SINE Alu 47 147 -2 8 1102 1023 242 38 98 chr11 67893613 67894011 -53949845 + MTE2a LTR MaLR 1 374 -5 8 1102 186 305 0 79 chr11 67894180 67894269 -53949587 + MIRc SINE MIR 35 116 -152 8 1102 348 255 133 32 chr11 67894439 67894597 -53949259 - L1MC3 LINE L1 -16 7769 7596 8 1102 316 283 9 9 chr11 67894606 67894622 -53949234 - L1MC3 LINE L1 -259 7736 7720 8 1102 1027 168 15 25 chr11 67894622 67894818 -53949038 - B2_Mm2 SINE B2 -1 194 1 8 1102 341 246 2 2 chr11 67894818 67894908 -53948948 - L1MC3 LINE L1 -295 7490 7419 8 1102 532 243 19 83 chr11 67894944 67894960 -53948896 - RSINE1 SINE B4 -8 157 142 8 1102 225 65 0 0 chr11 67894960 67894991 -53948865 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1102 532 243 19 83 chr11 67894991 67895131 -53948725 - RSINE1 SINE B4 -24 141 12 8 137 522 291 156 40 chr11 67895142 67895514 -53948342 - L1MC3 LINE L1 -354 7431 7017 8 1103 376 238 9 56 chr11 67895601 67895708 -53948148 - RSINE1 SINE B4 -61 104 3 8 1103 1483 74 16 0 chr11 67895717 67895906 -53947950 - B2_Mm2 SINE B2 -3 192 1 8 1103 1405 300 61 101 chr11 67895931 67897040 -53946816 - L1MC3 LINE L1 -828 6957 5893 8 1103 21 71 0 0 chr11 67897413 67897455 -53946401 + AT_rich Low_complexity Low_complexity 1 42 0 8 1103 568 253 40 11 chr11 67897458 67897634 -53946222 - B3A SINE B2 -16 182 2 8 1103 801 81 203 0 chr11 67897662 67897785 -53946071 + B1_Mus1 SINE Alu 1 148 0 8 1103 192 97 0 0 chr11 67897785 67897816 -53946040 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1103 398 305 74 55 chr11 67897822 67897985 -53945871 + B4 SINE B4 4 169 -123 8 1103 180 111 0 0 chr11 67898201 67898228 -53945628 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1103 483 258 71 81 chr11 67898236 67898447 -53945409 + B4A SINE B4 83 291 -1 8 1103 237 128 0 0 chr11 67898454 67898501 -53945355 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1103 192 97 0 0 chr11 67898496 67898527 -53945329 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1103 489 199 0 0 chr11 67898526 67898697 -53945159 + (CA)n Simple_repeat Simple_repeat 1 171 0 8 1103 214 157 39 0 chr11 67898702 67898753 -53945103 + (CTCA)n Simple_repeat Simple_repeat 2 54 0 8 1103 222 37 0 0 chr11 67898756 67898783 -53945073 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1103 279 0 0 0 chr11 67898782 67898813 -53945043 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1103 678 82 399 56 chr11 67899081 67899108 -53944748 - B2_Mm2 SINE B2 -3 192 166 8 1103 1416 73 15 40 chr11 67899108 67899307 -53944549 + B2_Mm2 SINE B2 1 194 -1 8 1103 678 82 399 56 chr11 67899307 67899422 -53944434 - B2_Mm2 SINE B2 -30 165 1 8 1103 283 270 40 0 chr11 67899505 67899579 -53944277 - ID2 SINE ID -4 79 3 8 1103 322 195 0 72 chr11 67899996 67900079 -53943777 - B4 SINE B4 0 292 216 8 1103 574 156 0 0 chr11 67900229 67900319 -53943537 + B3 SINE B2 1 90 -126 8 1103 1406 60 22 0 chr11 67900538 67900720 -53943136 - B2_Mm1a SINE B2 -5 188 3 8 1103 4250 129 124 5 chr11 67900722 67901514 -53942342 - RMER19B LTR ERVK -16 886 1 8 1103 346 221 165 106 chr11 67901683 67901956 -53941900 - L1MDa LINE L1 -4683 1950 1662 8 1103 235 300 0 11 chr11 67902327 67902418 -53941438 + BC1_Mm scRNA scRNA 2 91 -61 8 1103 336 246 114 1 chr11 67902648 67902745 -53941111 - B1F SINE Alu -14 106 1 8 1103 215 286 0 0 chr11 67902891 67902954 -53940902 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 8 1103 254 211 0 0 chr11 67903699 67903756 -53940100 - AluG_3 SINE Alu -93 218 162 8 1103 850 240 62 39 chr11 67904723 67904763 -53939093 - B3 SINE B2 -3 213 174 8 1103 216 67 0 0 chr11 67904763 67904793 -53939063 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1103 850 240 62 39 chr11 67904793 67904960 -53938896 - B3 SINE B2 -43 173 1 8 1103 1243 48 0 0 chr11 67904988 67905135 -53938721 + B1_Mus1 SINE Alu 2 148 0 8 1103 21 0 0 0 chr11 67905165 67905186 -53938670 + AT_rich Low_complexity Low_complexity 1 21 0 8 1103 465 194 38 28 chr11 67906019 67906125 -53937731 + B1F1 SINE Alu 1 107 -42 8 1103 923 311 46 9 chr11 67906169 67906613 -53937243 - RMER5 LTR ERV1 -19 515 34 9 1103 1201 68 0 0 chr11 67907783 67907930 -53935926 + B1_Mus1 SINE Alu 2 148 0 9 1103 358 69 0 33 chr11 67908153 67908213 -53935643 + (TTTTC)n Simple_repeat Simple_repeat 3 60 0 9 1103 1043 145 26 21 chr11 67908216 67908406 -53935450 - B2_Mm2 SINE B2 -4 191 1 9 1103 440 206 27 45 chr11 67908660 67908772 -53935084 + RSINE1 SINE B4 11 120 -45 9 1103 333 0 0 0 chr11 67909013 67909050 -53934806 + (TTG)n Simple_repeat Simple_repeat 3 39 0 9 1103 2680 58 0 0 chr11 67909688 67910016 -53933840 - L1_Mus2 LINE L1 -447 6119 5792 9 1103 1221 71 0 6 chr11 67910016 67910173 -53933683 + L1_Mus2 LINE L1 6138 6293 -273 9 1103 26 64 0 0 chr11 67910933 67910980 -53932876 + AT_rich Low_complexity Low_complexity 1 47 0 9 1103 510 91 0 0 chr11 67911575 67911652 -53932204 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 1103 517 296 20 14 chr11 67911667 67911814 -53932042 - RSINE1 SINE B4 -17 148 1 9 1103 858 237 1 31 chr11 67912344 67912565 -53931291 - B3 SINE B2 -1 197 1 9 1103 731 244 12 31 chr11 67912952 67913113 -53930743 - B3 SINE B2 -35 163 6 9 1103 859 266 98 107 chr11 67913727 67914215 -53929641 - RMER5 LTR ERV1 -17 517 34 9 1103 260 260 79 10 chr11 67914403 67914504 -53929352 - MLT1A1 LTR MaLR -7 401 294 9 1103 558 296 0 20 chr11 67914592 67914740 -53929116 - ID_B1 SINE B4 0 224 80 9 1103 230 378 78 8 chr11 67914747 67914875 -53928981 - MLT1A1 LTR MaLR -212 162 26 9 1103 520 349 19 33 chr11 67914972 67915349 -53928507 - MLT-int LTR MaLR -407 1328 904 9 1103 1191 54 0 0 chr11 67915556 67915703 -53928153 - B1_Mus2 SINE Alu 0 147 1 9 1103 440 322 182 16 chr11 67915760 67916183 -53927673 - MLT-int LTR MaLR -1190 545 53 9 1103 429 239 0 0 chr11 67916258 67916346 -53927510 + RSINE1 SINE B4 31 118 -47 9 1103 22 70 0 0 chr11 67916412 67916455 -53927401 + AT_rich Low_complexity Low_complexity 1 43 0 9 1103 291 140 0 0 chr11 67916506 67916556 -53927300 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1103 533 51 0 60 chr11 67916765 67916836 -53927020 + B1_Mur4 SINE Alu 70 140 -10 9 1103 219 36 0 0 chr11 67916836 67916864 -53926992 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1103 533 51 0 60 chr11 67916864 67916875 -53926981 + B1_Mur4 SINE Alu 141 147 -3 9 1103 1133 211 0 5 chr11 67917540 67917754 -53926102 - B3 SINE B2 -1 215 3 9 1103 300 280 91 77 chr11 67918010 67918153 -53925703 - ID_B1 SINE B4 -5 219 75 9 1103 254 269 35 82 chr11 67918256 67918341 -53925515 - ID4 SINE ID 0 83 3 9 1103 358 261 112 0 chr11 67918351 67918485 -53925371 - L1M5 LINE L1 -343 5821 5673 9 1103 642 286 29 43 chr11 67918593 67919030 -53924826 - L1M5 LINE L1 -827 5506 5079 9 1103 1135 55 7 33 chr11 67919032 67919183 -53924673 + B1_Mus2 SINE Alu 1 147 0 9 1103 400 243 117 29 chr11 67919289 67919467 -53924389 - L1M5 LINE L1 -1098 5048 4857 9 1103 28 29 0 0 chr11 67919528 67919563 -53924293 + AT_rich Low_complexity Low_complexity 1 35 0 9 1103 245 272 69 17 chr11 67919592 67919708 -53924148 - L1M5 LINE L1 -1910 4236 4115 9 1103 339 130 0 0 chr11 67919779 67919833 -53924023 + B1_Mur2 SINE Alu 85 138 -11 9 1103 357 330 26 0 chr11 67920009 67920124 -53923732 - PB1D7 SINE Alu -1 119 2 9 1103 1280 121 90 24 chr11 67920245 67920457 -53923399 - URR1A DNA MER1_type 0 226 1 9 1103 366 313 166 47 chr11 67921075 67921490 -53922366 - HAL1b LINE L1 -13 1996 1541 9 1103 2696 145 46 107 chr11 67921490 67922053 -53921803 + RLTR24 LTR ERV1 1 529 0 9 1103 366 313 166 47 chr11 67922053 67922211 -53921645 - HAL1b LINE L1 -469 1540 1355 9 1103 404 300 45 45 chr11 67922465 67922622 -53921234 - RSINE1 SINE B4 -1 164 8 9 1103 401 297 9 0 chr11 67923463 67923574 -53920282 + PB1D9 SINE Alu 2 113 -7 9 1103 744 128 0 140 chr11 67923580 67923744 -53920112 + B1_Mur3 SINE Alu 1 141 -8 9 1103 450 0 0 0 chr11 67923758 67923808 -53920048 + (TAA)n Simple_repeat Simple_repeat 2 51 0 9 1103 1049 228 74 87 chr11 67924412 67924815 -53919041 - MTEa-int LTR MaLR -585 995 598 9 1103 378 198 73 12 chr11 67924817 67924899 -53918957 - B1F2 SINE Alu -61 88 2 9 1103 730 209 34 0 chr11 67924899 67924979 -53918877 - ID SINE ID -139 85 1 9 1103 451 220 250 5 chr11 67924985 67925177 -53918679 - MTEa-int LTR MaLR -993 587 349 9 1103 317 252 47 39 chr11 67925171 67925299 -53918557 - MTEa-int LTR MaLR -1451 129 1 9 1103 305 229 10 59 chr11 67925330 67925432 -53918424 - MTEa LTR MaLR -33 346 250 9 1103 206 238 0 0 chr11 67925506 67925548 -53918308 + T-rich Low_complexity Low_complexity 5 46 0 9 1103 464 247 96 22 chr11 67925556 67925734 -53918122 + MTEb LTR MaLR 183 373 -6 9 1103 342 0 0 0 chr11 67925917 67925955 -53917901 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1103 701 220 0 47 chr11 67925970 67926118 -53917738 - RSINE1 SINE B4 -22 143 3 9 1103 1239 192 9 18 chr11 67926145 67926362 -53917494 - B3 SINE B2 -1 215 1 9 1103 1168 82 7 0 chr11 67926400 67926547 -53917309 + B1_Mus1 SINE Alu 1 148 0 9 1103 1198 48 7 0 chr11 67926597 67926743 -53917113 - B1_Mus1 SINE Alu -1 147 1 9 1103 1196 62 0 0 chr11 67928595 67928739 -53915117 - B1_Mm SINE Alu -2 145 2 9 1103 986 84 35 14 chr11 67928788 67928933 -53914923 + B1_Mus1 SINE Alu 1 148 0 9 1103 1680 26 0 5 chr11 67928936 67929129 -53914727 + B2_Mm1t SINE B2 2 193 0 9 1103 180 97 0 0 chr11 67929129 67929160 -53914696 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1103 186 106 64 0 chr11 67929168 67929215 -53914641 + (TTATA)n Simple_repeat Simple_repeat 2 51 0 9 1103 924 194 52 0 chr11 67929424 67929615 -53914241 + B3 SINE B2 6 206 -10 9 1103 243 125 0 0 chr11 67929697 67929737 -53914119 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1103 198 0 0 0 chr11 67930003 67930025 -53913831 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1103 1714 162 85 222 chr11 67930729 67931246 -53912610 - RLTR41 LTR ERV1 0 446 1 9 1103 389 281 29 7 chr11 67931319 67931455 -53912401 - ID_B1 SINE B4 0 224 86 9 1103 186 43 0 0 chr11 67931662 67931685 -53912171 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1103 636 169 23 46 chr11 67931689 67931819 -53912037 - B1_Mus1 SINE Alu -21 127 1 9 1103 274 231 0 0 chr11 67931823 67931888 -53911968 - Charlie8 DNA MER1_type -2281 147 83 9 1103 282 337 0 0 chr11 67934341 67934424 -53909432 + ID4 SINE ID 1 83 0 9 1103 330 182 0 0 chr11 67934449 67934515 -53909341 + GA-rich Low_complexity Low_complexity 3 68 0 9 1103 248 305 53 0 chr11 67934777 67934872 -53908984 - Helitron3Na_Mam RC Helitron -167 319 220 9 1103 301 260 36 93 chr11 67935188 67935328 -53908528 + L1MB3 LINE L1 6043 6174 -9 9 1103 225 0 0 0 chr11 67936153 67936178 -53907678 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1103 2420 298 116 13 chr11 67936280 67937265 -53906591 - Lx8 LINE L1 0 7473 6388 9 1103 428 257 86 91 chr11 67937452 67937649 -53906207 - B3A SINE B2 0 198 3 9 1103 1161 55 0 7 chr11 67937723 67937858 -53905998 + B1_Mus1 SINE Alu 3 137 -11 9 1103 243 0 0 0 chr11 67937858 67937885 -53905971 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1103 1161 55 0 7 chr11 67937885 67937896 -53905960 + B1_Mus1 SINE Alu 138 148 0 9 1103 411 21 0 0 chr11 67938056 67938104 -53905752 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1103 252 314 0 28 chr11 67938981 67939053 -53904803 - PB1D10 SINE Alu -9 108 39 9 1103 359 232 39 23 chr11 67939227 67939319 -53904537 - Lx9 LINE L1 0 7644 7551 9 1103 198 0 0 0 chr11 67939319 67939341 -53904515 + (TC)n Simple_repeat Simple_repeat 1 22 0 9 1103 359 232 39 23 chr11 67939341 67939376 -53904480 - Lx9 LINE L1 -94 7550 7515 9 1103 540 95 0 0 chr11 67939376 67939460 -53904396 + (TA)n Simple_repeat Simple_repeat 2 85 0 9 1103 1152 62 14 0 chr11 67940025 67940171 -53903685 + B1_Mus1 SINE Alu 1 148 0 9 1103 456 91 0 0 chr11 67940185 67940251 -53903605 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 9 1103 507 231 107 8 chr11 67940821 67940952 -53902904 + RSINE1 SINE B4 5 148 -17 9 1103 261 0 0 0 chr11 67940973 67941002 -53902854 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1103 216 214 71 0 chr11 67941022 67941064 -53902792 + PB1 SINE Alu 78 122 -5 9 1103 1195 55 0 0 chr11 67941145 67941291 -53902565 - B1_Mus2 SINE Alu 0 147 2 9 1103 446 254 26 17 chr11 67941521 67941637 -53902219 + PB1D10 SINE Alu 1 117 0 9 1103 229 320 0 0 chr11 67941861 67941936 -53901920 + ID4 SINE ID 3 77 -6 9 1103 1029 72 7 21 chr11 67941987 67942128 -53901728 - B1_Mus1 SINE Alu -9 139 1 9 1103 545 316 20 30 chr11 67942256 67942455 -53901401 + B3A SINE B2 2 198 0 9 1103 23 54 0 0 chr11 67942666 67942703 -53901153 + AT_rich Low_complexity Low_complexity 1 37 0 9 1103 302 190 17 0 chr11 67943063 67943121 -53900735 + ID4 SINE ID 5 63 -20 9 1103 288 254 0 0 chr11 67943065 67943136 -53900720 + tRNA-Ala-GCA tRNA tRNA 2 72 -3 9 1103 887 254 156 15 chr11 67943288 67943627 -53900229 + MTD LTR MaLR 19 405 -14 9 1103 301 274 274 0 chr11 67944132 67944245 -53899611 + RSINE1 SINE B4 3 146 -19 9 1103 609 174 42 25 chr11 67944305 67944423 -53899433 - B1_Mur3 SINE Alu 0 120 1 9 1103 317 212 10 133 chr11 67944337 67944435 -53899421 - MT2B LTR ERVL -361 240 155 9 1103 981 104 0 0 chr11 67944533 67944677 -53899179 + (TCTCC)n Simple_repeat Simple_repeat 3 146 0 9 1103 731 123 24 136 chr11 67944680 67944849 -53899007 - B1_Mur4 SINE Alu 0 150 1 9 1103 548 251 191 34 chr11 67945258 67945578 -53898278 + L1MB5 LINE L1 5785 6151 -23 9 1103 515 278 148 30 chr11 67946966 67947296 -53896560 + L1MA7 LINE L1 5726 6094 -197 9 1103 468 236 32 16 chr11 67947321 67947446 -53896410 - L1MA6 LINE L1 -166 6134 6008 9 1103 715 216 43 0 chr11 67947487 67947626 -53896230 + B1_Mur2 SINE Alu 3 147 -2 9 1103 762 302 31 10 chr11 67947648 67947774 -53896082 + ID_B1 SINE B4 14 140 -84 9 1103 192 77 0 0 chr11 67947774 67947800 -53896056 + (ATTAG)n Simple_repeat Simple_repeat 5 30 0 9 1103 762 302 31 10 chr11 67947800 67947867 -53895989 + ID_B1 SINE B4 141 210 -14 9 1103 203 216 19 19 chr11 67947880 67947932 -53895924 + CT-rich Low_complexity Low_complexity 1 52 0 9 1103 288 270 110 22 chr11 67947932 67948023 -53895833 - PB1D7 SINE Alu -15 105 7 1 1103 395 152 307 3 chr11 67949547 67949662 -53894194 - B1F SINE Alu -2 147 4 1 1103 212 59 29 0 chr11 67950855 67950889 -53892967 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1103 554 248 33 0 chr11 67950896 67951017 -53892839 - ID_B1 SINE B4 -16 208 84 1 1103 306 164 0 0 chr11 67951343 67951398 -53892458 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 1 1103 2017 204 149 16 chr11 67951414 67951903 -53891953 - RMER15 LTR ERVL 0 575 22 1 1103 1316 147 4 78 chr11 67951913 67952156 -53891700 + URR1A DNA MER1_type 2 226 0 1 1103 275 250 0 0 chr11 67952218 67952278 -53891578 - RMER15 LTR ERVL -515 60 1 1 1103 459 157 111 56 chr11 67952291 67952399 -53891457 - RSINE1 SINE B4 -49 116 3 1 1103 304 306 64 18 chr11 67952736 67952846 -53891010 + RSINE1 SINE B4 3 117 -48 1 1103 183 42 0 0 chr11 67952846 67952870 -53890986 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1103 306 0 0 0 chr11 67952870 67952903 -53890953 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1103 297 0 0 0 chr11 67953568 67953601 -53890255 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1 1103 265 281 16 0 chr11 67953698 67953762 -53890094 + PB1D10 SINE Alu 31 95 -22 1 1103 242 337 31 42 chr11 67953762 67953794 -53890062 + ID_B1 SINE B4 112 206 -18 1 1103 240 290 0 16 chr11 67954370 67954433 -53889423 + ID4_ SINE ID 1 62 -21 1 1103 242 258 65 180 chr11 67954690 67954708 -53889148 - B2_Mm2 SINE B2 -1 194 177 1 1103 836 178 234 6 chr11 67954708 67954883 -53888973 - B3 SINE B2 -1 215 1 1 1103 443 258 65 180 chr11 67954883 67955081 -53888775 - B3A SINE B2 -3 195 3 1 1103 214 171 0 0 chr11 67955687 67955722 -53888134 + T-rich Low_complexity Low_complexity 2 36 0 1 1103 360 0 0 0 chr11 67956225 67956265 -53887591 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1103 553 208 148 23 chr11 67956358 67956486 -53887370 + B1_Mur2 SINE Alu 1 144 -5 1 1103 1152 186 14 5 chr11 67956487 67956698 -53887158 + B3 SINE B2 3 215 -1 1 1103 669 253 51 93 chr11 67957134 67957348 -53886508 + MER2 DNA MER2_type 5 209 -136 1 1103 324 0 0 0 chr11 67960979 67961015 -53882841 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1103 312 232 58 0 chr11 67961814 67961883 -53881973 + PB1D7 SINE Alu 1 73 -47 1 1103 724 265 102 66 chr11 67962073 67962408 -53881448 + ORR1E LTR MaLR 8 354 -5 1 1103 1694 31 0 0 chr11 67965212 67965404 -53878452 + B2_Mm1a SINE B2 2 193 0 1 1103 782 200 7 0 chr11 67965494 67965634 -53878222 - B1_Mur1 SINE Alu -6 143 3 1 1103 604 307 47 0 chr11 67965865 67966015 -53877841 - RSINE1 SINE B4 -6 159 3 1 1103 843 230 202 16 chr11 67966086 67966333 -53877523 - MER2 DNA MER2_type -39 306 14 1 1103 669 86 0 0 chr11 67966789 67966882 -53876974 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1103 348 295 122 15 chr11 67967154 67967285 -53876571 - HAL1 LINE L1 -372 2135 1991 1 1103 231 224 20 0 chr11 67967289 67967338 -53876518 - MTD LTR MaLR -14 405 356 1 1103 225 0 0 0 chr11 67967354 67967379 -53876477 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1103 372 243 37 18 chr11 67967380 67967489 -53876367 - MTD LTR MaLR -299 120 10 1 1103 231 303 15 15 chr11 67967909 67967976 -53875880 - ID SINE ID -154 70 4 1 1103 453 187 0 0 chr11 67968062 67968137 -53875719 + B3A SINE B2 2 76 -122 1 1103 345 327 116 12 chr11 67968997 67969161 -53874695 - MER21B LTR ERV1 -60 803 623 1 1103 966 289 83 25 chr11 67969186 67969548 -53874308 - MER21B LTR ERV1 -469 394 12 1 1103 442 254 200 34 chr11 67970824 67970999 -53872857 - MIR SINE MIR -8 254 51 1 1103 798 152 257 0 chr11 67971557 67971728 -53872128 - B3 SINE B2 0 216 2 1 1103 242 315 101 0 chr11 67972099 67972188 -53871668 + B1F1 SINE Alu 6 103 -46 1 1103 240 111 0 0 chr11 67972306 67972342 -53871514 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1 1103 751 160 17 0 chr11 67972916 67973053 -53870803 - B1_Mur1 SINE Alu 0 149 18 1 1103 858 190 43 100 chr11 67974035 67974245 -53869611 - B3A SINE B2 0 198 1 1 1103 627 282 0 0 chr11 67974303 67974434 -53869422 + B1F SINE Alu 3 133 -16 1 1103 364 230 52 53 chr11 67974988 67975118 -53868738 - LTR48 LTR ERV1 -517 127 1 1 1103 216 23 0 154 chr11 67975753 67975805 -53868051 + A-rich Low_complexity Low_complexity 2 45 0 1 1103 274 306 157 0 chr11 67976466 67976574 -53867282 - MLT1J-int LTR MaLR -90 1297 1173 1 1103 327 211 0 0 chr11 67976637 67976689 -53867167 + RSINE1 SINE B4 64 115 -50 1 1103 269 236 59 102 chr11 67977165 67977192 -53866664 - BC1_Mm scRNA scRNA -39 113 92 1 1103 543 296 13 7 chr11 67977192 67977345 -53866511 - RSINE1 SINE B4 -10 155 2 1 1103 269 236 59 102 chr11 67977345 67977435 -53866421 - BC1_Mm scRNA scRNA -61 91 1 1 1103 1659 21 0 25 chr11 67978337 67978534 -53865322 - B2_Mm1a SINE B2 0 193 2 1 1103 618 362 48 32 chr11 67978543 67979108 -53864748 + L1M5 LINE L1 3533 4106 -2040 1 1103 405 0 0 0 chr11 67979602 67979647 -53864209 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1103 1497 181 207 3 chr11 67979912 67980260 -53863596 + MTD LTR MaLR 1 419 0 1 1103 359 21 21 0 chr11 67982426 67982474 -53861382 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1103 420 20 0 0 chr11 67982474 67982522 -53861334 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1103 423 245 6 41 chr11 67982527 67982647 -53861209 - B1F2 SINE Alu 0 149 2 1 1103 357 248 109 17 chr11 67983347 67983432 -53860424 + Lx8 LINE L1 7015 7106 -367 1 1103 180 0 0 0 chr11 67983432 67983452 -53860404 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1103 357 248 109 17 chr11 67983452 67983485 -53860371 + Lx8 LINE L1 7107 7143 -330 1 1103 25 51 0 0 chr11 67983532 67983571 -53860285 + AT_rich Low_complexity Low_complexity 1 39 0 1 1103 252 207 86 0 chr11 67983596 67983654 -53860202 - MLT1B LTR MaLR -4 361 299 1 1103 779 268 56 41 chr11 67983713 67983992 -53859864 - MLT1B LTR MaLR -37 337 68 1 1103 1157 215 57 67 chr11 67984954 67985268 -53858588 - MTEa LTR MaLR -60 319 9 1 1103 3036 256 101 21 chr11 67985278 67986103 -53857753 - MTEa-int LTR MaLR -2 1578 688 1 1103 327 320 55 60 chr11 67986196 67986481 -53857375 - RSINE1 SINE B4 -11 281 28 1 1103 450 0 0 0 chr11 67986481 67986531 -53857325 + (CCA)n Simple_repeat Simple_repeat 2 51 0 1 1103 343 278 263 0 chr11 67986564 67986689 -53857167 - MTEa-int LTR MaLR -1009 571 412 1 1103 230 143 0 0 chr11 67986689 67986724 -53857132 + PB1D9 SINE Alu 1 35 -85 1 1103 357 24 0 0 chr11 67986778 67986820 -53857036 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 1 1103 1510 227 105 23 chr11 67986820 67987212 -53856644 - MTEa-int LTR MaLR -1153 427 4 1 1103 1191 241 69 25 chr11 67987214 67987576 -53856280 - MTEa LTR MaLR -1 378 1 1 1103 211 246 31 0 chr11 67988042 67988107 -53855749 - L3 LINE CR1 -1714 2775 2709 1 1103 195 42 0 0 chr11 67989279 67989303 -53854553 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 1103 434 259 93 0 chr11 67989303 67989411 -53854445 - ID_B1 SINE B4 -16 208 91 1 1103 677 254 29 34 chr11 67989700 67989977 -53853879 + ORR1D2 LTR MaLR 1 359 0 1 1103 396 304 67 70 chr11 67990208 67990452 -53853404 + MER57C2 LTR ERV1 157 418 -16 1 1103 215 196 0 38 chr11 67990627 67990680 -53853176 + T-rich Low_complexity Low_complexity 5 55 0 1 1103 321 310 69 8 chr11 67991064 67991194 -53852662 - MIR SINE MIR -79 183 46 1 1103 456 77 0 0 chr11 67991946 67992011 -53851845 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1103 2419 141 74 3 chr11 67992798 67993190 -53850666 - MTC LTR MaLR 0 421 2 1 1103 549 176 125 37 chr11 67993635 67993771 -53850085 + B1F2 SINE Alu 1 148 -1 1 1103 353 67 33 0 chr11 67994766 67994826 -53849030 + (GTTTG)n Simple_repeat Simple_repeat 3 64 0 1 1103 1176 48 14 14 chr11 67994826 67994974 -53848882 - B1_Mus1 SINE Alu 0 148 1 1 1103 1444 83 0 5 chr11 67995049 67995242 -53848614 - B2_Mm2 SINE B2 -1 194 3 1 1103 1641 32 0 11 chr11 67995267 67995458 -53848398 - B2_Mm1t SINE B2 -4 189 1 1 1103 295 250 102 0 chr11 67996410 67996518 -53847338 - ORR1E LTR MaLR -222 137 19 1 1103 1213 61 7 0 chr11 67997839 67997986 -53845870 - B1_Mus1 SINE Alu 0 148 1 1 1103 266 300 0 0 chr11 67998266 67998326 -53845530 + (CCG)n Simple_repeat Simple_repeat 1 60 0 1 1103 268 343 121 6 chr11 67998851 67999033 -53844823 + L2b LINE L2 2810 3012 -407 1 1103 191 291 135 34 chr11 67999130 67999219 -53844637 + L2b LINE L2 3199 3296 -79 1 1103 207 258 76 0 chr11 68001257 68001323 -53842533 - MIRc SINE MIR -31 237 167 1 1103 777 59 240 16 chr11 68002831 68002952 -53840904 + B1_Mus1 SINE Alu 1 148 0 2 1103 205 260 0 0 chr11 68003287 68003337 -53840519 - L2c LINE L2 -2 3385 3336 3 1103 295 291 9 24 chr11 68004337 68004452 -53839404 - ID4 SINE ID -31 121 8 4 1103 1042 245 55 55 chr11 68005342 68005649 -53838207 - MTEa LTR MaLR -2 377 71 5 1103 278 242 15 0 chr11 68009018 68009084 -53834772 - PB1D10 SINE Alu -20 97 31 6 1103 660 206 8 22 chr11 68010408 68010542 -53833314 - B1_Mur1 SINE Alu 0 149 18 7 1103 366 136 0 0 chr11 68011399 68011480 -53832376 + (T)n Simple_repeat Simple_repeat 1 81 0 8 1103 1292 14 7 0 chr11 68011480 68011626 -53832230 - B1_Mm SINE Alu 0 147 1 9 1103 224 220 0 20 chr11 68011858 68011909 -53831947 + GA-rich Low_complexity Low_complexity 2 51 0 1 1103 582 285 0 8 chr11 68011979 68012110 -53831746 + B4 SINE B4 163 292 0 1 1103 261 0 0 0 chr11 68014705 68014734 -53829122 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1103 202 336 91 27 chr11 68015040 68015150 -53828706 - L2b LINE L2 -17 3358 3242 1 1103 312 312 261 3 chr11 68015273 68015556 -53828300 - L2b LINE L2 -351 3068 2713 1 1103 453 214 188 0 chr11 68016438 68016555 -53827301 + B1_Mur3 SINE Alu 1 139 -10 1 1103 217 0 0 57 chr11 68016555 68016590 -53827266 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1103 904 194 6 12 chr11 68016597 68016769 -53827087 + ID_B1 SINE B4 53 223 -1 1 1103 322 183 17 0 chr11 68017902 68017962 -53825894 + B1_Mus2 SINE Alu 3 63 -84 1 1103 324 306 22 36 chr11 68018724 68018863 -53824993 + MIRc SINE MIR 72 208 -60 1 1103 186 133 0 0 chr11 68022980 68023010 -53820846 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1103 227 319 192 34 chr11 68024799 68024945 -53818911 + MIRb SINE MIR 90 258 -10 2 1104 301 268 116 43 chr11 68027527 68027691 -53816165 - MER5A DNA MER1_type 0 189 14 2 1104 433 273 247 17 chr11 68027767 68028002 -53815854 + B4A SINE B4 1 289 -3 2 1104 382 290 56 8 chr11 68029120 68029245 -53814611 + MLT1B LTR MaLR 24 154 -236 2 1104 367 261 340 27 chr11 68030068 68030324 -53813532 + MLT1A1 LTR MaLR 64 399 -9 2 1104 257 309 96 98 chr11 68032532 68032821 -53811035 - ORR1E LTR MaLR -10 360 76 2 1104 227 39 36 55 chr11 68034084 68034139 -53809717 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1104 846 0 0 0 chr11 68035436 68035530 -53808326 + (TCCC)n Simple_repeat Simple_repeat 1 94 0 2 1104 306 0 0 0 chr11 68036411 68036445 -53807411 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1104 329 54 95 0 chr11 68038957 68039031 -53804825 + (TTTG)n Simple_repeat Simple_repeat 4 84 0 2 1104 226 247 137 46 chr11 68041638 68041791 -53802065 - RLTR40 LTR ERVK -81 736 570 3 1104 571 286 18 0 chr11 68042916 68043084 -53800772 + L1M6 LINE L1 13 183 -6313 3 1104 255 170 0 0 chr11 68043164 68043211 -53800645 + GA-rich Low_complexity Low_complexity 3 49 0 3 1104 279 299 85 21 chr11 68043673 68043861 -53799995 + L1M6 LINE L1 1155 1354 -5142 3 1104 423 160 0 0 chr11 68043966 68044041 -53799815 + CT-rich Low_complexity Low_complexity 4 78 0 3 1104 1136 123 0 0 chr11 68044041 68044204 -53799652 - B2_Mm2 SINE B2 -31 164 2 3 1104 499 248 22 47 chr11 68045150 68045302 -53798554 + B3A SINE B2 47 189 -9 3 1104 415 208 10 19 chr11 68045460 68045563 -53798293 + MTEb LTR MaLR 262 363 -16 3 1104 819 210 6 18 chr11 68045761 68045926 -53797930 + RSINE1 SINE B4 2 164 -1 3 1104 1107 184 112 27 chr11 68047807 68048182 -53795674 + RMER4B LTR ERVK 1 447 -138 3 1104 230 181 95 27 chr11 68048353 68048427 -53795429 + RMER4B LTR ERVK 498 576 -9 3 1104 603 224 16 8 chr11 68048757 68048883 -53794973 + RSINE1 SINE B4 3 129 -36 3 1104 652 230 6 57 chr11 68049508 68049665 -53794191 + B1_Mur1 SINE Alu 1 149 0 4 1104 394 277 75 8 chr11 68049720 68049840 -53794016 + B1F2 SINE Alu 12 139 -10 4 1104 320 172 219 0 chr11 68049857 68049921 -53793935 + ID4_ SINE ID 3 80 -3 4 1104 208 331 115 12 chr11 68050128 68050293 -53793563 - L2a LINE L2 -229 3197 3016 4 1104 1442 56 28 0 chr11 68050923 68051103 -53792753 + B2_Mm2 SINE B2 1 185 -10 4 1104 275 0 29 0 chr11 68051103 68051138 -53792718 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1104 1099 29 0 0 chr11 68053665 68053804 -53790052 + B1_Mus2 SINE Alu 6 144 -3 4 1104 212 154 0 0 chr11 68054589 68054628 -53789228 + C-rich Low_complexity Low_complexity 1 39 0 4 1104 283 0 47 23 chr11 68054709 68054752 -53789104 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 1104 1064 37 0 0 chr11 68054753 68054889 -53788967 - B1_Mus1 SINE Alu 0 148 13 4 1104 249 33 0 0 chr11 68055736 68055766 -53788090 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 5 1104 1222 163 14 0 chr11 68056466 68056681 -53787175 - URR1B DNA MER1_type 0 225 8 5 1104 638 241 95 14 chr11 68056888 68057090 -53786766 + B3A SINE B2 9 216 0 5 1104 372 364 19 38 chr11 68057093 68057253 -53786603 + MER2B DNA MER2_type 148 304 -32 5 1104 414 323 45 13 chr11 68058473 68058630 -53785226 + MLT1J1 LTR MaLR 21 182 -262 5 1104 216 238 0 0 chr11 68058820 68058862 -53784994 + (CGG)n Simple_repeat Simple_repeat 3 44 0 5 1104 855 301 69 48 chr11 68059032 68059364 -53784492 - MER2 DNA MER2_type -3 342 4 5 1104 275 346 29 0 chr11 68059365 68059469 -53784387 + LTR16A1 LTR ERVL 2 108 -348 5 1104 281 260 38 57 chr11 68059651 68059757 -53784099 + LTR16A1 LTR ERVL 353 456 0 5 1104 1011 167 94 0 chr11 68060133 68060325 -53783531 + B3 SINE B2 6 215 -1 5 1104 192 282 41 53 chr11 68060513 68060640 -53783216 + MIR SINE MIR 74 190 -72 5 1104 1809 101 93 153 chr11 68060680 68061099 -53782757 + ORR1B1 LTR MaLR 1 394 0 6 1104 215 321 0 36 chr11 68061745 68061829 -53782027 + G-rich Low_complexity Low_complexity 4 84 0 6 1104 401 150 9 27 chr11 68061831 68061852 -53782004 + polypurine Low_complexity Low_complexity 2 22 0 6 1104 312 27 0 0 chr11 68061852 68061889 -53781967 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1104 401 150 9 27 chr11 68061889 68061977 -53781879 + GA-rich Low_complexity Low_complexity 23 108 0 6 1104 180 0 0 0 chr11 68062502 68062522 -53781334 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1104 260 246 33 0 chr11 68063039 68063100 -53780756 + ID SINE ID 6 68 -156 6 1104 405 293 10 0 chr11 68063280 68063379 -53780477 + RSINE1 SINE B4 44 143 -22 6 1104 704 230 73 0 chr11 68063698 68063902 -53779954 - MER20 DNA MER1_type 0 219 1 6 1104 485 248 13 54 chr11 68064090 68064239 -53779617 + B1F2 SINE Alu 1 143 -6 6 1104 343 221 121 4 chr11 68064509 68064616 -53779240 + PB1 SINE Alu 2 125 -2 7 1104 504 242 130 6 chr11 68064625 68064787 -53779069 + B3A SINE B2 1 182 -16 7 1104 245 318 0 0 chr11 68064841 68064907 -53778949 + ID4 SINE ID 3 68 -15 7 1104 531 40 0 0 chr11 68065151 68065226 -53778630 - L1_Mus3 LINE L1 -8 6630 6556 7 1104 207 0 0 0 chr11 68065226 68065249 -53778607 + (CCCCCA)n Simple_repeat Simple_repeat 6 28 0 7 1104 259 318 22 0 chr11 68065769 68065871 -53777985 - L1MC LINE L1 -1531 4615 4512 7 1104 211 269 134 0 chr11 68066090 68066157 -53777699 - BC1_Mm scRNA scRNA -61 91 16 7 1104 377 296 37 7 chr11 68066188 68066324 -53777532 - B1F2 SINE Alu -9 140 1 7 1104 210 37 0 0 chr11 68068246 68068273 -53775583 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1104 494 222 168 58 chr11 68068484 68068675 -53775181 + B3A SINE B2 2 213 -3 7 1104 621 282 43 38 chr11 68068678 68068951 -53774905 + B4A SINE B4 1 292 0 8 1104 225 0 0 0 chr11 68069057 68069082 -53774774 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 8 1104 311 222 86 32 chr11 68069234 68069327 -53774529 - PB1 SINE Alu 0 127 30 8 1104 235 313 113 0 chr11 68069988 68070103 -53773753 + Tigger5 DNA MER2_type 46 173 -2233 8 1104 270 294 12 12 chr11 68070153 68070239 -53773617 + Tigger5 DNA MER2_type 2320 2405 -1 8 1104 250 332 159 34 chr11 68070244 68070571 -53773285 - Charlie4a DNA MER1_type -111 397 30 8 1104 475 110 14 0 chr11 68071412 68071485 -53772371 + URR1B DNA MER1_type 152 225 0 8 1104 248 226 46 0 chr11 68072351 68072427 -53771429 - ID4_ SINE ID -64 88 6 8 1104 397 229 146 0 chr11 68072885 68072981 -53770875 - MER58B DNA MER1_type -18 323 214 8 1104 401 249 58 25 chr11 68072990 68073009 -53770847 - ID_B1 SINE B4 0 224 147 8 1104 452 233 0 28 chr11 68073009 68073115 -53770741 - PB1D10 SINE Alu -10 107 5 8 1104 401 249 58 25 chr11 68073115 68073129 -53770727 - ID_B1 SINE B4 0 146 79 8 1104 334 258 171 30 chr11 68075422 68075586 -53768270 + ORR1E LTR MaLR 9 195 -164 9 1104 1478 189 208 90 chr11 68077069 68077499 -53766357 + MT2A LTR ERVL 1 458 -75 9 1104 360 0 0 0 chr11 68077499 68077539 -53766317 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1104 1478 189 208 90 chr11 68077539 68077585 -53766271 + MT2A LTR ERVL 459 532 -1 9 1104 270 0 0 0 chr11 68077618 68077648 -53766208 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 1104 998 322 27 78 chr11 68078870 68079281 -53764575 + MLT1B LTR MaLR 1 390 0 9 1104 468 0 0 0 chr11 68079717 68079769 -53764087 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1104 1735 190 71 13 chr11 68080109 68080503 -53763353 + MTD LTR MaLR 3 419 0 9 1104 378 255 6 2 chr11 68081143 68081241 -53762615 + PB1D10 SINE Alu 5 99 -50 9 1104 868 244 20 15 chr11 68081598 68081794 -53762062 - B3A SINE B2 0 198 2 9 1104 348 232 42 67 chr11 68081825 68081945 -53761911 + PB1D9 SINE Alu 4 120 0 9 1104 972 101 99 18 chr11 68082099 68082270 -53761586 - B2_Mm2 SINE B2 -10 185 1 1 1104 537 300 119 54 chr11 68082471 68083181 -53760675 - L1MB8 LINE L1 -227 5952 5199 1 1104 3240 147 70 0 chr11 68083182 68083735 -53760121 + Lx LINE L1 5971 6562 -92 1 1104 1063 286 60 129 chr11 68085035 68085569 -53758287 + Lx8 LINE L1 6763 7259 -214 1 1104 243 273 15 0 chr11 68085577 68085643 -53758213 + RMER15 LTR ERVL 404 470 -105 1 1104 183 171 49 0 chr11 68086326 68086367 -53757489 - MIR3 SINE MIR -6 202 160 1 1104 295 287 69 0 chr11 68087086 68087173 -53756683 + MER5B DNA MER1_type 80 172 -6 1 1104 324 299 34 17 chr11 68089787 68089906 -53753950 + MER45A DNA Tip100 51 171 -7 1 1104 560 259 95 138 chr11 68091752 68091954 -53751902 + MER2 DNA MER2_type 9 201 -144 1 1104 695 153 145 0 chr11 68091954 68092078 -53751778 - B1_Mus1 SINE Alu -6 142 1 1 1104 560 259 95 138 chr11 68092078 68092202 -53751654 + MER2 DNA MER2_type 202 321 -24 1 1104 301 281 29 19 chr11 68093050 68093155 -53750701 - L1M5 LINE L1 -516 5608 5503 1 1104 216 0 0 0 chr11 68095021 68095045 -53748811 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1104 381 256 36 21 chr11 68095354 68095566 -53748290 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 1 1104 255 61 0 0 chr11 68096040 68096073 -53747783 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 1 1104 820 171 13 20 chr11 68096260 68096409 -53747447 - B1_Mur2 SINE Alu 0 149 2 1 1104 529 226 0 0 chr11 68096847 68096953 -53746903 - PB1D10 SINE Alu -6 111 6 1 1104 838 194 75 25 chr11 68096986 68097187 -53746669 - ID_B1 SINE B4 -13 211 1 1 1104 239 273 18 0 chr11 68097200 68097255 -53746601 - MER5A1 DNA MER1_type -104 62 7 1 1104 1346 65 0 0 chr11 68097761 68097947 -53745909 + L1Md_A LINE L1 6397 6582 0 1 1104 298 268 161 8 chr11 68098635 68098759 -53745097 + Tigger7 DNA MER2_type 2206 2348 -143 1 1104 504 0 0 0 chr11 68098839 68098895 -53744961 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1104 192 40 0 0 chr11 68100395 68100420 -53743436 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1104 848 251 23 23 chr11 68100442 68100658 -53743198 + B3 SINE B2 1 216 0 1 1104 595 174 122 16 chr11 68101961 68102084 -53741772 - B1_Mur2 SINE Alu -1 148 13 1 1104 251 194 26 118 chr11 68102017 68102093 -53741763 - MT2B LTR ERVL -366 235 167 1 1104 502 278 85 13 chr11 68103017 68103170 -53740686 + RSINE1 SINE B4 2 165 0 1 1104 210 333 22 22 chr11 68103806 68103895 -53739961 - MIRb SINE MIR -58 210 122 1 1104 260 310 52 44 chr11 68104851 68104986 -53738870 + MIR SINE MIR 29 164 -98 1 1104 364 273 55 47 chr11 68106155 68106282 -53737574 - MER2B DNA MER2_type 0 336 209 1 1104 463 230 31 38 chr11 68106375 68106509 -53737347 - B1_Mur1 SINE Alu 0 149 2 1 1104 258 324 0 26 chr11 68106632 68106708 -53737148 - MER2B DNA MER2_type -261 75 2 1 1104 185 324 54 0 chr11 68106789 68106863 -53736993 + L2a LINE L2 3348 3425 -1 1 1104 511 250 136 30 chr11 68107356 68107554 -53736302 + MER2 DNA MER2_type 125 343 -2 1 1104 392 322 117 39 chr11 68107676 68108060 -53735796 + L2 LINE L2 2249 2662 -757 1 1104 225 65 0 0 chr11 68108128 68108159 -53735697 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 1 1104 339 44 0 0 chr11 68109249 68109294 -53734562 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1104 304 185 0 44 chr11 68109318 68109386 -53734470 + HAL1-3A_ME LINE L1 1959 2023 -835 1 1104 558 202 0 0 chr11 68109448 68109621 -53734235 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 1104 457 195 4 36 chr11 68109720 68109969 -53733887 + GA-rich Low_complexity Low_complexity 1 240 0 1 1104 191 350 90 0 chr11 68110448 68110548 -53733308 - L2c LINE L2 -238 3149 3041 1 1104 859 247 9 27 chr11 68110850 68111075 -53732781 - ID_B1 SINE B4 0 224 4 1 1104 221 268 0 90 chr11 68111106 68111128 -53732728 + B1F1 SINE Alu 4 25 -124 1 1104 3562 18 121 0 chr11 68111128 68111568 -53732288 - MT2_Mm LTR ERVL 0 493 1 1 1104 230 238 173 12 chr11 68111568 68111649 -53732207 + PB1D7 SINE Alu 21 114 -6 1 1104 846 200 130 11 chr11 68112603 68112780 -53731076 - B3 SINE B2 -1 215 18 1 1104 795 270 68 61 chr11 68112811 68113091 -53730765 + B4 SINE B4 1 282 -10 1 1104 233 98 24 0 chr11 68113096 68113137 -53730719 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1104 333 330 112 64 chr11 68113187 68113532 -53730324 + ORR1E LTR MaLR 1 361 -13 1 1104 1023 9 0 0 chr11 68113585 68113701 -53730155 + (GGGAA)n Simple_repeat Simple_repeat 3 118 0 1 1104 799 251 11 38 chr11 68113868 68114054 -53729802 - B3A SINE B2 -1 197 17 1 1104 1182 50 0 0 chr11 68114491 68114630 -53729226 - B1_Mus1 SINE Alu -9 139 1 1 1104 422 292 62 0 chr11 68114673 68114803 -53729053 + B1F1 SINE Alu 5 142 -7 1 1104 2338 71 3 79 chr11 68116439 68116792 -53727064 - ORR1A3 LTR MaLR 0 326 1 1 1104 186 400 89 13 chr11 68118388 68118545 -53725311 + MIRc SINE MIR 41 209 -59 1 1104 447 252 54 0 chr11 68118685 68118796 -53725060 + PB1D10 SINE Alu 1 117 0 1 1104 1070 228 4 35 chr11 68118829 68119056 -53724800 + ID_B1 SINE B4 2 221 -3 1 1104 424 282 0 0 chr11 68119063 68119148 -53724708 + PB1D10 SINE Alu 6 90 -27 1 1104 383 243 158 55 chr11 68119178 68119361 -53724495 - MIR SINE MIR -19 243 42 1 1104 252 0 0 0 chr11 68119436 68119464 -53724392 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1104 216 305 0 0 chr11 68120370 68120429 -53723427 - ID4_ SINE ID -19 64 6 1 1104 453 269 67 0 chr11 68120435 68120539 -53723317 - PB1D10 SINE Alu -6 111 1 1 1104 326 218 24 82 chr11 68120559 68120644 -53723212 + MT2B2 LTR ERVL 160 239 -345 1 1104 657 179 51 0 chr11 68120569 68120686 -53723170 + B1_Mur1 SINE Alu 8 130 -19 1 1104 459 0 0 0 chr11 68120694 68120745 -53723111 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1104 441 0 0 0 chr11 68120745 68120793 -53723063 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1104 1016 231 10 0 chr11 68121065 68121268 -53722588 + B3 SINE B2 3 207 -9 1 1104 425 286 137 41 chr11 68122016 68122213 -53721643 + ID_B1 SINE B4 1 216 -8 1 1104 279 93 0 0 chr11 68122228 68122271 -53721585 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 1 1104 294 254 57 41 chr11 68122369 68122492 -53721364 + L3 LINE CR1 4014 4138 -351 1 1104 271 253 13 0 chr11 68124435 68124514 -53719342 + L1MB8 LINE L1 5320 5399 -892 1 1104 1611 234 161 14 chr11 68124516 68125068 -53718788 + Lx9 LINE L1 7000 7632 -12 1 1104 1838 259 131 13 chr11 68125066 68125746 -53718110 + L1MB8 LINE L1 5401 6160 -18 1 1104 331 244 36 16 chr11 68125747 68125866 -53717990 - MIR SINE MIR -61 147 28 1 1104 270 0 0 0 chr11 68128282 68128312 -53715544 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1104 714 224 48 20 chr11 68128375 68128521 -53715335 - RSINE1 SINE B4 -3 162 13 1 1104 358 239 0 0 chr11 68128546 68128617 -53715239 - ID4_ SINE ID -11 72 2 1 1104 239 278 0 53 chr11 68128779 68128855 -53715001 - L1M5 LINE L1 -307 5817 5746 1 1104 275 271 4 0 chr11 68128887 68128957 -53714899 - ID4_ SINE ID -52 100 30 1 1104 1863 274 38 55 chr11 68129237 68129898 -53713958 + MER82 DNA MER2_type 1 650 -3 1 1104 393 310 81 77 chr11 68130497 68130683 -53713173 + MLT1C LTR MaLR 339 525 -24 1 1104 375 248 79 43 chr11 68130858 68130997 -53712859 + L1M5 LINE L1 5196 5339 -807 1 1104 180 326 0 20 chr11 68131053 68131103 -53712753 - L3b LINE CR1 -100 382 334 1 1104 190 196 20 61 chr11 68131077 68131126 -53712730 - L2b LINE L2 -222 3153 3107 1 1104 277 294 123 7 chr11 68131543 68131697 -53712159 + MLT1N2 LTR MaLR 384 555 -7 1 1104 370 282 0 12 chr11 68132011 68132097 -53711759 - MER58A DNA MER1_type -138 86 2 1 1104 1310 158 18 5 chr11 68132873 68133096 -53710760 + URR1A DNA MER1_type 1 226 0 1 1104 1724 219 82 13 chr11 68133195 68133584 -53710272 + MTD LTR MaLR 4 419 0 1 1104 381 323 58 6 chr11 68133738 68133894 -53709962 - MER5A1 DNA MER1_type 0 166 3 1 1104 1064 243 10 0 chr11 68134409 68134615 -53709241 + ID_B1 SINE B4 1 208 -16 1 1104 886 139 27 27 chr11 68135498 68135646 -53708210 + B1_Mur4 SINE Alu 2 149 -1 1 1104 1115 215 91 34 chr11 68135689 68136127 -53707729 - L1MB3 LINE L1 -35 6148 5686 1 1104 253 207 24 0 chr11 68136172 68136254 -53707602 + GA-rich Low_complexity Low_complexity 1 84 0 1 1104 460 260 182 8 chr11 68136254 68136386 -53707470 - B3A SINE B2 -43 155 1 1 1104 541 316 167 79 chr11 68136390 68136947 -53706909 - L1ME3A LINE L1 -5 6168 5563 1 1104 1782 104 88 11 chr11 68137916 68138189 -53705667 - ORR1A4 LTR MaLR -8 321 28 1 1104 330 336 9 17 chr11 68138296 68138411 -53705445 + ID_B1 SINE B4 83 196 -28 1 1104 1013 198 161 65 chr11 68138412 68138706 -53705150 + ORR1C2 LTR MaLR 7 229 -155 1 1104 315 0 0 0 chr11 68138706 68138741 -53705115 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 1 1104 1013 189 184 28 chr11 68138741 68138855 -53705001 + ORR1C2 LTR MaLR 230 383 -1 1 1104 303 252 124 19 chr11 68138891 68138996 -53704860 + PB1D10 SINE Alu 1 116 -1 1 1104 270 346 7 0 chr11 68140445 68140581 -53703275 + L1M5 LINE L1 4069 4205 -1941 1 1104 230 240 40 0 chr11 68140983 68141058 -53702798 + L1MC LINE L1 4759 4836 -1310 1 1104 1159 62 7 0 chr11 68141269 68141413 -53702443 + B1_Mus2 SINE Alu 2 146 -1 1 1104 1106 74 0 0 chr11 68141499 68141634 -53702222 - B1_Mus1 SINE Alu -13 135 1 1 1104 430 216 11 54 chr11 68141659 68141752 -53702104 + PB1D10 SINE Alu 24 112 -5 2 1104 692 166 40 61 chr11 68141816 68141964 -53701892 + B1_Mur3 SINE Alu 1 145 -4 2 1104 276 30 0 0 chr11 68141966 68141999 -53701857 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 2 1104 294 95 0 0 chr11 68142014 68142056 -53701800 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1104 498 219 0 0 chr11 68142346 68142442 -53701414 - B3A SINE B2 -102 96 1 2 1104 615 211 60 45 chr11 68142453 68142587 -53701269 - ID_B1 SINE B4 -4 220 85 2 1104 977 258 88 38 chr11 68142929 68143348 -53700508 + L1MB3 LINE L1 5744 6183 0 2 1104 973 168 0 20 chr11 68143353 68143505 -53700351 + B1_Mur1 SINE Alu 1 149 0 2 1104 539 255 234 0 chr11 68143519 68143664 -53700192 + B3A SINE B2 3 181 -17 2 1104 216 67 0 0 chr11 68143669 68143699 -53700157 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1104 220 298 217 9 chr11 68146691 68146806 -53697050 + MIRb SINE MIR 88 226 -42 2 1104 626 217 208 17 chr11 68147386 68147564 -53696292 - B3 SINE B2 0 216 5 2 1104 261 365 103 71 chr11 68148163 68148531 -53695325 + MLT1J LTR MaLR 122 501 -11 2 1104 213 39 0 0 chr11 68148876 68148902 -53694954 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1104 1231 55 0 7 chr11 68149145 68149293 -53694563 + B1_Mus1 SINE Alu 1 147 -1 2 1104 1158 62 14 0 chr11 68149600 68149744 -53694112 + B1_Mus2 SINE Alu 2 147 0 2 1104 449 250 64 77 chr11 68149999 68150155 -53693701 + MT2B LTR ERVL 111 264 -337 2 1104 1051 87 0 0 chr11 68150052 68150190 -53693666 + B1_Mus1 SINE Alu 11 148 0 2 1104 355 302 120 84 chr11 68150484 68150759 -53693097 + MLT1A LTR MaLR 19 303 -71 2 1104 325 298 66 19 chr11 68151679 68151785 -53692071 + PB1D10 SINE Alu 2 112 -5 2 1104 235 345 87 34 chr11 68151979 68152174 -53691682 - MIRc SINE MIR -63 205 4 2 1104 494 366 60 20 chr11 68152978 68153276 -53690580 - MARNA DNA Mariner -120 466 157 2 1104 313 273 67 76 chr11 68153259 68153378 -53690478 + MARNA DNA Mariner 456 573 -13 2 1104 187 326 0 0 chr11 68154124 68154170 -53689686 + L3 LINE CR1 4215 4260 -229 2 1104 22 0 0 0 chr11 68156378 68156400 -53687456 + AT_rich Low_complexity Low_complexity 1 22 0 2 1104 337 236 0 14 chr11 68156943 68157016 -53686840 + ID4_ SINE ID 1 72 -11 2 1104 216 0 0 0 chr11 68157025 68157049 -53686807 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1104 226 327 45 45 chr11 68157138 68157250 -53686606 - MIR SINE MIR -135 127 16 2 1105 807 245 10 74 chr11 68157534 68157557 -53686299 - B3A SINE B2 -4 194 173 2 1105 249 57 0 0 chr11 68157557 68157592 -53686264 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 2 1105 807 245 10 74 chr11 68157592 68157771 -53686085 - B3A SINE B2 -26 172 6 2 1105 230 159 0 0 chr11 68158588 68158632 -53685224 + A-rich Low_complexity Low_complexity 1 44 0 2 1105 385 241 34 10 chr11 68159644 68159743 -53684113 + PB1D7 SINE Alu 10 119 -1 2 1105 441 293 0 60 chr11 68159844 68159950 -53683906 + B4A SINE B4 131 232 -60 2 1105 378 200 325 35 chr11 68159950 68160064 -53683792 + B1_Mur1 SINE Alu 2 148 -1 2 1105 441 293 0 60 chr11 68160064 68160106 -53683750 + B4A SINE B4 233 269 -23 2 1105 183 357 80 9 chr11 68160193 68160306 -53683550 - L2b LINE L2 -212 3163 3043 2 1105 615 142 0 0 chr11 68160830 68160936 -53682920 + (TGGA)n Simple_repeat Simple_repeat 3 108 0 2 1105 258 288 30 0 chr11 68161312 68161378 -53682478 + ID2 SINE ID 6 73 -10 2 1105 1148 152 11 33 chr11 68163182 68163400 -53680456 + MTD LTR MaLR 179 407 0 2 1105 621 270 182 13 chr11 68163457 68163929 -53679927 - L1MB7 LINE L1 -37 6147 5596 2 1105 323 250 35 12 chr11 68163948 68164033 -53679823 - PB1D10 SINE Alu -6 111 25 2 1105 219 94 0 0 chr11 68164043 68164075 -53679781 - ID SINE ID -191 33 2 2 1105 247 294 34 24 chr11 68164529 68164623 -53679233 - MIRb SINE MIR -50 212 116 2 1105 307 316 71 87 chr11 68164637 68164728 -53679128 + Tigger15a DNA TcMar 387 480 -235 2 1105 728 237 7 0 chr11 68164728 68164863 -53678993 + B1_Mur2 SINE Alu 4 139 -10 2 1105 307 316 71 87 chr11 68164863 68165024 -53678832 + Tigger15a DNA TcMar 481 635 -80 2 1105 374 327 58 81 chr11 68166136 68166496 -53677360 - MLT1A1 LTR MaLR -6 402 4 2 1105 1789 249 62 8 chr11 68167034 68167504 -53676352 + RMER5 LTR ERV1 40 534 0 2 1105 228 200 0 0 chr11 68167872 68167922 -53675934 + CT-rich Low_complexity Low_complexity 2 51 0 2 1105 228 361 136 18 chr11 68167935 68168045 -53675811 + L2c LINE L2 3293 3426 0 2 1105 513 176 0 0 chr11 68168050 68168158 -53675698 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 2 1105 759 93 246 0 chr11 68169637 68169755 -53674101 + B1_Mur2 SINE Alu 3 149 0 2 1105 492 207 193 0 chr11 68169796 68169946 -53673910 + L1MA9 LINE L1 6127 6305 -7 2 1105 677 291 51 9 chr11 68169983 68170198 -53673658 - MER2 DNA MER2_type -29 316 93 2 1105 471 18 0 0 chr11 68170947 68171003 -53672853 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1105 406 75 15 15 chr11 68171375 68171443 -53672413 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1105 298 232 0 0 chr11 68171449 68171505 -53672351 - B3 SINE B2 -67 149 94 2 1105 285 292 93 46 chr11 68171541 68171735 -53672121 - L1MC4 LINE L1 -464 7578 7376 2 1105 1215 50 0 0 chr11 68172213 68172352 -53671504 + B1_Mus2 SINE Alu 3 141 -6 2 1105 495 0 0 0 chr11 68172354 68172409 -53671447 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1105 1076 285 110 35 chr11 68172441 68173034 -53670822 - L1MB7 LINE L1 -56 6128 5492 2 1105 494 208 31 55 chr11 68173049 68173176 -53670680 + ORR1E LTR MaLR 30 153 -206 2 1105 859 230 25 37 chr11 68173193 68173398 -53670458 - B3 SINE B2 0 216 3 2 1105 458 257 175 9 chr11 68173398 68173556 -53670300 + ORR1E LTR MaLR 161 379 0 2 1105 506 271 33 78 chr11 68173651 68173831 -53670025 - B3A SINE B2 -26 172 1 2 1105 408 259 98 9 chr11 68173868 68174139 -53669717 - L1MB7 LINE L1 -755 5425 5124 2 1105 619 195 47 8 chr11 68174269 68174398 -53669458 + B1_Mus2 SINE Alu 6 139 -8 2 1105 397 260 30 54 chr11 68174525 68174822 -53669034 - L1MB7 LINE L1 -2829 3317 3028 2 1105 244 176 88 0 chr11 68175449 68175517 -53668339 + tRNA-Ala-GCA tRNA tRNA 2 75 0 2 1105 180 0 0 0 chr11 68175854 68175874 -53667982 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1105 895 235 70 0 chr11 68175892 68176092 -53667764 + B3 SINE B2 3 216 0 2 1105 265 260 0 25 chr11 68176133 68176212 -53667644 + PB1D10 SINE Alu 41 117 0 2 1105 292 281 12 24 chr11 68176214 68176298 -53667558 + ID4_ SINE ID 1 83 0 2 1105 318 305 114 0 chr11 68176337 68176442 -53667414 + PB1D10 SINE Alu 1 117 0 2 1105 314 257 64 37 chr11 68176442 68176551 -53667305 + L1MB7 LINE L1 1852 1963 -4545 2 1105 339 192 0 0 chr11 68176556 68176629 -53667227 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2 1105 339 25 0 0 chr11 68176654 68176694 -53667162 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1105 612 208 49 49 chr11 68176963 68177125 -53666731 + RSINE1 SINE B4 4 165 0 2 1105 257 317 174 47 chr11 68177174 68177386 -53666470 + MIRb SINE MIR 2 240 -28 2 1105 378 331 186 20 chr11 68177540 68177894 -53665962 + L1MB7 LINE L1 3525 3937 -2384 2 1105 526 274 170 65 chr11 68177932 68178152 -53665704 + L1MB7 LINE L1 5602 5846 -513 2 1105 1231 225 73 76 chr11 68178152 68178508 -53665348 - ORR1E LTR MaLR 0 359 5 2 1105 526 274 170 65 chr11 68178508 68178705 -53665151 + L1MB7 LINE L1 5847 6063 -296 2 1105 338 252 191 24 chr11 68178833 68178959 -53664897 + B1F1 SINE Alu 3 149 0 2 1105 369 350 59 41 chr11 68179039 68179345 -53664511 + L1MD LINE L1 4001 4323 -1823 2 1105 761 200 20 27 chr11 68179554 68179703 -53664153 - B1_Mur1 SINE Alu 0 149 2 2 1105 921 132 37 30 chr11 68179990 68180143 -53663713 + B2_Mm2 SINE B2 1 155 -40 2 1105 417 123 0 0 chr11 68180143 68180208 -53663648 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1105 549 340 19 24 chr11 68180220 68180425 -53663431 + L1M5 LINE L1 5587 5790 -374 2 1105 1058 121 0 0 chr11 68180479 68180620 -53663236 + B1_Mus2 SINE Alu 3 143 -4 2 1105 354 23 0 0 chr11 68180620 68180663 -53663193 + (CAA)n Simple_repeat Simple_repeat 1 43 0 2 1105 330 318 81 98 chr11 68180704 68181000 -53662856 + B4A SINE B4 2 292 0 2 1105 615 256 134 0 chr11 68181730 68181902 -53661954 + B3 SINE B2 1 195 -21 2 1105 351 0 0 0 chr11 68181907 68181946 -53661910 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2 1105 652 225 33 0 chr11 68181948 68182068 -53661788 - B1_Mur2 SINE Alu -25 124 1 2 1105 545 219 57 9 chr11 68182136 68182242 -53661614 + RSINE1 SINE B4 10 120 -45 2 1105 453 302 118 31 chr11 68182271 68182626 -53661230 + L1MC4a LINE L1 7418 7803 -79 2 1105 413 357 43 22 chr11 68182801 68183033 -53660823 + L1M5 LINE L1 4779 5015 -1131 2 1105 377 287 47 71 chr11 68183045 68183214 -53660642 + L1MEd LINE L1 13 177 -5942 2 1105 538 206 3 0 chr11 68183419 68183540 -53660316 - B1F SINE Alu -25 124 2 2 1105 316 263 13 26 chr11 68183623 68183701 -53660155 + B3 SINE B2 1 77 -139 2 1105 475 200 26 52 chr11 68183703 68183819 -53660037 + B1_Mur1 SINE Alu 22 134 -15 2 1105 287 263 65 13 chr11 68183811 68183888 -53659968 + B4A SINE B4 15 95 -197 2 1105 219 139 0 0 chr11 68184088 68184124 -53659732 + (CATA)n Simple_repeat Simple_repeat 4 39 0 2 1105 1191 105 0 28 chr11 68184181 68184357 -53659499 + B2_Mm2 SINE B2 2 172 -23 2 1105 381 22 0 0 chr11 68184562 68184608 -53659248 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1105 204 149 0 0 chr11 68184864 68184911 -53658945 + (C)n Simple_repeat Simple_repeat 1 47 0 2 1105 358 232 59 44 chr11 68185188 68185323 -53658533 + L1MEd LINE L1 656 792 -5327 2 1105 362 221 12 0 chr11 68185370 68185456 -53658400 + L1ME3A LINE L1 5857 5943 -230 2 1105 314 324 0 36 chr11 68185466 68185578 -53658278 + PB1D10 SINE Alu 1 108 -9 3 1105 300 197 152 0 chr11 68186214 68186280 -53657576 + MIR SINE MIR 73 148 -114 3 1105 427 311 75 53 chr11 68186310 68186575 -53657281 + L1ME3B LINE L1 5573 5843 -397 3 1105 239 289 13 13 chr11 68186831 68186908 -53656948 + MIR SINE MIR 147 223 -39 3 1105 206 352 28 37 chr11 68187581 68187690 -53656166 - L3 LINE CR1 -68 4421 4314 3 1105 974 266 113 11 chr11 68188527 68188864 -53654992 + Tigger7 DNA MER2_type 84 470 -2021 3 1105 483 279 50 62 chr11 68188861 68189098 -53654758 + Tigger7 DNA MER2_type 2254 2486 -5 3 1105 226 267 90 39 chr11 68190175 68190253 -53653603 - RSINE1 SINE B4 0 165 84 3 1105 256 290 32 76 chr11 68190299 68190456 -53653400 - B4A SINE B4 -141 151 2 3 1105 208 143 0 0 chr11 68190524 68190559 -53653297 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1105 219 261 87 0 chr11 68190637 68190706 -53653150 - ID4 SINE ID -6 77 3 3 1105 912 304 81 22 chr11 68190751 68191023 -53652833 - B4A SINE B4 0 292 5 3 1105 933 246 6 0 chr11 68191060 68191239 -53652617 - B3A SINE B2 -18 180 1 3 1105 874 208 22 22 chr11 68191265 68191447 -53652409 + B3A SINE B2 1 182 -16 3 1105 192 77 0 0 chr11 68191479 68191505 -53652351 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1105 866 118 118 0 chr11 68191505 68191632 -53652224 - B1_Mur4 SINE Alu -8 142 1 3 1105 504 48 0 0 chr11 68191634 68191697 -53652159 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 3 1105 276 298 75 19 chr11 68191735 68191841 -53652015 + PB1D9 SINE Alu 9 120 0 3 1105 360 200 81 12 chr11 68193507 68193593 -53650263 + B3 SINE B2 11 102 -114 3 1105 371 289 0 58 chr11 68193738 68193841 -53650015 + MT2B LTR ERVL 161 257 -344 3 1105 789 154 69 0 chr11 68193751 68193881 -53649975 + B1_Mur2 SINE Alu 10 148 -1 3 1105 355 290 32 16 chr11 68193922 68194048 -53649808 + RSINE1 SINE B4 5 132 -33 3 1105 220 208 0 70 chr11 68194059 68194116 -53649740 + ID SINE ID 15 67 -157 3 1105 189 74 0 0 chr11 68194139 68194166 -53649690 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 3 1105 204 40 0 0 chr11 68194180 68194205 -53649651 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 1105 517 291 111 28 chr11 68194502 68194682 -53649174 + MIR SINE MIR 50 244 -18 3 1105 207 186 47 0 chr11 68196872 68196915 -53646941 + A-rich Low_complexity Low_complexity 3 47 0 3 1105 234 333 80 7 chr11 68197495 68197646 -53646210 + RMER10B LTR ERVL 174 335 -63 3 1105 339 254 83 42 chr11 68197516 68197709 -53646147 + RMER17A LTR ERVK 346 546 -205 3 1105 201 74 0 0 chr11 68197827 68197854 -53646002 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1105 258 247 11 11 chr11 68200246 68200340 -53643516 + (CCG)n Simple_repeat Simple_repeat 3 96 0 3 1105 210 207 0 0 chr11 68200368 68200426 -53643430 + (CACG)n Simple_repeat Simple_repeat 4 61 0 3 1105 254 95 0 23 chr11 68200439 68200482 -53643374 + (CCG)n Simple_repeat Simple_repeat 2 43 0 3 1105 29 60 0 0 chr11 68200497 68200547 -53643309 + GC_rich Low_complexity Low_complexity 1 50 0 3 1105 489 34 0 0 chr11 68201332 68201391 -53642465 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1105 413 257 72 18 chr11 68201455 68201566 -53642290 + PB1 SINE Alu 11 127 0 3 1105 223 286 87 48 chr11 68202141 68202244 -53641612 - L4 LINE RTE -2 2027 1921 3 1105 557 264 110 0 chr11 68202315 68202478 -53641378 + MIR SINE MIR 20 200 -62 3 1105 333 274 14 0 chr11 68202580 68202653 -53641203 + ID4_ SINE ID 2 75 -8 3 1105 604 343 62 22 chr11 68203051 68203373 -53640483 - L4 LINE RTE -186 1843 1509 3 1105 333 0 0 0 chr11 68203781 68203818 -53640038 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 3 1105 558 0 0 0 chr11 68203818 68203880 -53639976 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 3 1105 360 313 134 16 chr11 68204272 68204577 -53639279 - L2 LINE L2 -1265 2154 1814 3 1105 203 300 14 0 chr11 68204704 68204774 -53639082 - L2 LINE L2 -1907 1512 1442 3 1105 563 242 74 62 chr11 68204958 68205214 -53638642 + RMER17C LTR ERVK 19 277 -133 3 1105 339 244 25 37 chr11 68205648 68205729 -53638127 - ID4_ SINE ID 0 83 4 3 1105 414 236 35 4 chr11 68205740 68205837 -53638019 - PB1D7 SINE Alu -50 99 3 3 1105 245 288 0 70 chr11 68205776 68205847 -53638009 - B4A SINE B4 -144 148 83 3 1105 1166 188 14 14 chr11 68205999 68206215 -53637641 + B3 SINE B2 1 216 0 3 1105 1129 98 0 0 chr11 68206237 68206380 -53637476 + B1_Mur4 SINE Alu 1 143 -7 3 1105 1684 21 5 0 chr11 68206831 68207022 -53636834 + B2_Mm1a SINE B2 2 193 0 3 1105 234 0 0 0 chr11 68207070 68207096 -53636760 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1105 475 292 49 22 chr11 68207501 68207725 -53636131 + CR1_Mam LINE CR1 1189 1418 -786 3 1105 293 293 85 0 chr11 68208036 68208118 -53635738 - MER20B DNA MER1_type -609 174 86 3 1105 395 252 34 25 chr11 68209023 68209141 -53634715 + Tigger15a DNA TcMar 597 715 0 3 1105 1311 251 123 43 chr11 68209674 68210023 -53633833 + MTE2a LTR MaLR 3 379 0 3 1105 22 0 0 0 chr11 68210257 68210279 -53633577 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 204 301 60 70 chr11 68210491 68210598 -53633258 + L2a LINE L2 3252 3421 -5 3 1105 631 230 31 8 chr11 68211743 68211870 -53631986 + RSINE1 SINE B4 3 132 -33 3 1105 348 245 101 0 chr11 68212221 68212328 -53631528 - MIRb SINE MIR -112 156 30 3 1105 218 32 0 31 chr11 68214842 68214874 -53628982 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 3 1105 590 229 7 51 chr11 68214874 68215012 -53628844 - B1_Mur1 SINE Alu -13 136 5 3 1105 249 271 152 30 chr11 68215016 68215115 -53628741 - PB1D10 SINE Alu -1 116 6 3 1105 665 235 99 12 chr11 68215469 68215641 -53628215 - B3A SINE B2 -11 187 1 3 1105 1156 194 15 0 chr11 68215671 68215877 -53627979 - B3 SINE B2 -5 211 3 3 1105 213 217 0 21 chr11 68215895 68215942 -53627914 + GA-rich Low_complexity Low_complexity 2 47 0 3 1105 1142 99 0 6 chr11 68215942 68216114 -53627742 + (GAGAA)n Simple_repeat Simple_repeat 1 171 0 3 1105 499 210 50 0 chr11 68216126 68216226 -53627630 + B1_Mur2 SINE Alu 28 132 -17 3 1105 1015 293 129 26 chr11 68216354 68216425 -53627431 + L1MB8 LINE L1 5469 5540 -638 3 1105 1472 129 4 4 chr11 68216425 68216650 -53627206 + URR1B DNA MER1_type 1 225 0 3 1105 1015 293 129 26 chr11 68216650 68216970 -53626886 + L1MB8 LINE L1 5541 5899 -279 3 1105 234 0 0 0 chr11 68216970 68216996 -53626860 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1105 1015 293 129 26 chr11 68216996 68217247 -53626609 + L1MB8 LINE L1 5900 6176 -2 3 1105 391 345 48 0 chr11 68217652 68217797 -53626059 + MIR SINE MIR 53 204 -58 3 1105 427 299 86 96 chr11 68218491 68218794 -53625062 - MER20B DNA MER1_type -468 315 16 3 1105 230 346 154 0 chr11 68219783 68219913 -53623943 - L2b LINE L2 -1 3374 3225 3 1105 972 231 19 19 chr11 68219967 68220183 -53623673 + B3 SINE B2 1 216 0 3 1105 189 175 24 24 chr11 68220194 68220235 -53623621 - L2 LINE L2 -3096 323 283 3 1105 224 315 139 7 chr11 68220240 68220384 -53623472 - L2b LINE L2 -233 3142 2980 3 1105 362 309 38 54 chr11 68220380 68220601 -53623255 - MIRc SINE MIR -2 260 5 3 1105 252 307 13 0 chr11 68220750 68220825 -53623031 - ID4_ SINE ID -5 78 3 3 1105 692 150 0 17 chr11 68221953 68222068 -53621788 - B1_Mus2 SINE Alu -1 146 34 3 1105 293 322 79 75 chr11 68222085 68222313 -53621543 + Charlie4a DNA MER1_type 91 319 -189 3 1105 712 178 35 43 chr11 68222869 68223010 -53620846 - B1_Mur3 SINE Alu 0 149 10 3 1105 314 202 31 155 chr11 68222895 68223024 -53620832 - MT2B LTR ERVL -323 278 166 3 1105 250 29 0 79 chr11 68223011 68223049 -53620807 - ORR1C2 LTR MaLR -349 35 1 3 1105 384 77 0 0 chr11 68223141 68223193 -53620663 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1105 307 219 78 0 chr11 68223193 68223257 -53620599 - ID4 SINE ID -11 72 4 3 1105 236 330 51 44 chr11 68223411 68223684 -53620172 + L1MEg LINE L1 568 842 -5242 3 1105 1105 100 15 126 chr11 68223820 68224026 -53619830 - B2_Mm2 SINE B2 -10 185 3 3 1105 578 211 19 0 chr11 68224197 68224301 -53619555 + B1_Mur1 SINE Alu 41 146 -3 3 1105 420 258 0 0 chr11 68224404 68224582 -53619274 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1105 231 264 0 0 chr11 68224601 68224692 -53619164 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1105 591 234 103 8 chr11 68224713 68224900 -53618956 + B3A SINE B2 6 215 -1 3 1105 339 246 96 56 chr11 68224901 68225099 -53618757 + L1MD LINE L1 5273 5478 -764 3 1105 686 163 98 0 chr11 68225125 68225248 -53618608 - B1_Mur2 SINE Alu 0 149 15 3 1105 544 194 28 9 chr11 68225267 68225376 -53618480 - B3 SINE B2 -6 210 100 3 1105 537 215 154 7 chr11 68225377 68225513 -53618343 + B3 SINE B2 51 206 -10 3 1105 298 257 40 103 chr11 68225661 68225787 -53618069 - PB1D7 SINE Alu -2 118 1 3 1105 315 305 0 0 chr11 68225851 68225927 -53617929 - ID4 SINE ID -68 84 9 3 1105 304 295 30 158 chr11 68225929 68226076 -53617780 - L1M4 LINE L1 -5357 1185 1057 3 1105 1046 203 10 15 chr11 68226076 68226281 -53617575 - ID_B1 SINE B4 -19 205 2 3 1105 304 295 30 158 chr11 68226281 68226311 -53617545 - L1M4 LINE L1 -5486 1056 1027 3 1105 1011 236 10 5 chr11 68226311 68226520 -53617336 + B3 SINE B2 2 211 -5 3 1105 304 295 30 158 chr11 68226520 68226671 -53617185 - L1M4 LINE L1 -5516 1026 898 3 1105 333 0 0 0 chr11 68226699 68226736 -53617120 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3 1105 661 217 28 21 chr11 68226736 68226877 -53616979 - B1_Mur2 SINE Alu -1 148 7 3 1105 432 227 35 26 chr11 68226884 68226997 -53616859 - L1M4 LINE L1 -5605 937 824 3 1105 1003 227 5 24 chr11 68227073 68227281 -53616575 + MTEa LTR MaLR 1 204 -175 3 1105 2164 132 36 9 chr11 68227294 68227631 -53616225 + ORR1B1 LTR MaLR 41 386 -8 3 1105 534 265 52 19 chr11 68227637 68227791 -53616065 + MTEa LTR MaLR 208 366 -13 3 1105 241 293 58 41 chr11 68227923 68228044 -53615812 - L1M4 LINE L1 -6036 506 384 3 1105 232 241 35 0 chr11 68228048 68228106 -53615750 + A-rich Low_complexity Low_complexity 5 64 0 3 1105 343 257 273 78 chr11 68228116 68228419 -53615437 - L1M4 LINE L1 -6152 390 29 3 1105 638 300 126 43 chr11 68228423 68228908 -53614948 - L1M5 LINE L1 -1548 4598 4074 4 1105 742 132 25 6 chr11 68228910 68229070 -53614786 + (TG)n Simple_repeat Simple_repeat 2 164 0 4 1105 558 265 55 74 chr11 68229097 68229354 -53614502 - L1MB7 LINE L1 -98 6086 5835 4 1105 844 116 70 28 chr11 68229403 68229545 -53614311 - B1_Mur4 SINE Alu 0 150 3 4 1105 919 199 114 10 chr11 68229585 68229778 -53614078 - B3 SINE B2 -1 215 3 4 1105 285 271 117 41 chr11 68229877 68230073 -53613783 - L1M5 LINE L1 -2152 3994 3784 4 1105 387 0 0 0 chr11 68230119 68230162 -53613694 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4 1105 579 157 49 0 chr11 68230178 68230280 -53613576 - B1_Mur1 SINE Alu -13 136 30 4 1105 570 183 104 67 chr11 68230354 68230489 -53613367 + B1_Mus1 SINE Alu 7 146 -2 4 1105 327 191 371 29 chr11 68230643 68230783 -53613073 - ID_B1 SINE B4 -4 220 33 4 1105 803 173 6 0 chr11 68230787 68230960 -53612896 + CT-rich Low_complexity Low_complexity 4 177 0 4 1105 1286 20 0 0 chr11 68230970 68231116 -53612740 - B1_Mus1 SINE Alu -2 146 1 4 1105 283 200 0 0 chr11 68231783 68231838 -53612018 - RSINE1 SINE B4 -109 56 2 4 1105 384 267 28 28 chr11 68232036 68232144 -53611712 - B1_Mur2 SINE Alu 0 149 42 4 1105 347 0 23 0 chr11 68232382 68232425 -53611431 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1105 2223 148 41 26 chr11 68232430 68232645 -53611211 - MTB_Mm LTR MaLR -4 403 179 4 1105 4090 73 70 2 chr11 68232645 68233190 -53610666 - Lx3_Mus LINE L1 0 7009 6428 4 1105 2223 148 41 26 chr11 68233190 68233363 -53610493 - MTB_Mm LTR MaLR -229 178 9 4 1105 771 83 0 0 chr11 68233386 68233494 -53610362 + (GA)n Simple_repeat Simple_repeat 1 108 0 4 1105 397 231 65 28 chr11 68233494 68233591 -53610265 - PB1 SINE Alu -20 107 6 4 1105 294 255 74 11 chr11 68233621 68233716 -53610140 - MTEa LTR MaLR 0 379 279 4 1105 4254 234 108 2 chr11 68233926 68234880 -53608976 + RMER1A Other Other 1 1027 -3 4 1105 1272 90 0 0 chr11 68234896 68235107 -53608749 + (GAAA)n Simple_repeat Simple_repeat 1 211 0 4 1105 697 203 21 14 chr11 68235127 68235272 -53608584 + B1_Mus1 SINE Alu 3 148 0 4 1105 319 324 0 0 chr11 68235273 68235384 -53608472 + B3A SINE B2 64 174 -24 4 1105 270 0 0 0 chr11 68236396 68236426 -53607430 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1105 249 206 0 40 chr11 68236426 68236502 -53607354 + A-rich Low_complexity Low_complexity 4 76 0 4 1105 281 318 22 11 chr11 68236503 68236592 -53607264 - PB1D10 SINE Alu -13 104 15 4 1105 720 177 48 28 chr11 68236837 68236982 -53606874 + B1_Mur1 SINE Alu 2 149 0 4 1105 787 253 82 5 chr11 68236979 68237174 -53606682 - ID_B1 SINE B4 -13 211 2 4 1105 295 236 0 0 chr11 68237184 68237256 -53606600 - L1MB8 LINE L1 -1 6177 6106 4 1105 420 37 0 0 chr11 68237429 68237483 -53606373 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1105 1639 294 59 20 chr11 68237492 68238105 -53605751 - L1MB8 LINE L1 -74 6104 5468 4 1105 999 128 0 7 chr11 68238141 68238290 -53605566 - B1_Mur4 SINE Alu -1 149 2 4 1105 745 307 41 33 chr11 68238291 68238682 -53605174 - L1MB8 LINE L1 -1089 5057 4664 4 1105 282 239 48 57 chr11 68238724 68238848 -53605008 - L1M2 LINE L1 -1760 4383 4261 4 1105 393 75 0 0 chr11 68238886 68238939 -53604917 + (CATA)n Simple_repeat Simple_repeat 4 56 0 4 1105 317 309 0 0 chr11 68239305 68239385 -53604471 - LTR88a LTR Gypsy -30 786 707 4 1105 1114 342 28 69 chr11 68239385 68239963 -53603893 + Charlie8 DNA MER1_type 1 554 -1874 4 1105 732 108 0 0 chr11 68239992 68240122 -53603734 + (CA)n Simple_repeat Simple_repeat 2 131 0 4 1105 522 217 28 9 chr11 68240800 68240907 -53602949 - PB1D9 SINE Alu -1 119 11 4 1105 963 202 14 33 chr11 68241006 68241221 -53602635 - B3 SINE B2 -5 211 1 4 1105 1024 239 19 0 chr11 68241273 68241482 -53602374 - ID_B1 SINE B4 -10 214 2 4 1105 205 51 51 0 chr11 68241511 68241550 -53602306 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1105 843 205 75 5 chr11 68241799 68242000 -53601856 + B3 SINE B2 2 216 0 4 1105 1247 48 0 0 chr11 68242021 68242167 -53601689 + B1_Mm SINE Alu 2 147 0 4 1105 508 243 0 9 chr11 68242207 68242315 -53601541 - PB1D10 SINE Alu -10 107 1 4 1105 599 263 211 25 chr11 68242328 68242733 -53601123 - L1MC4a LINE L1 -306 7736 7251 4 1105 564 15 0 0 chr11 68242796 68242861 -53600995 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 4 1105 1033 142 0 0 chr11 68242897 68243045 -53600811 - B1_Mur3 SINE Alu 0 149 2 4 1105 854 116 0 7 chr11 68243147 68243286 -53600570 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 4 1105 671 35 12 0 chr11 68243286 68243372 -53600484 + (TCC)n Simple_repeat Simple_repeat 3 89 0 4 1105 411 21 0 0 chr11 68246929 68246977 -53596879 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1105 405 329 71 0 chr11 68247135 68247275 -53596581 - RSINE1 SINE B4 -5 160 11 4 1105 329 181 27 40 chr11 68247271 68247346 -53596510 - ID_B1 SINE B4 -7 217 144 4 1105 344 233 0 14 chr11 68247407 68247481 -53596375 + MER104 DNA Tc2 109 181 0 4 1105 563 200 12 147 chr11 68247660 68247830 -53596026 - B1_Mur1 SINE Alu -1 148 2 4 1105 344 257 96 29 chr11 68248033 68248137 -53595719 - MIRb SINE MIR -33 235 125 4 1105 239 323 54 23 chr11 68248568 68248698 -53595158 + L2b LINE L2 3029 3162 -213 4 1105 200 263 16 66 chr11 68249298 68249359 -53594497 - L2c LINE L2 -70 3317 3260 4 1105 1237 143 42 32 chr11 68250187 68250404 -53593452 - URR1B DNA MER1_type 0 225 7 4 1105 378 0 0 0 chr11 68250476 68250518 -53593338 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1105 348 304 8 50 chr11 68250791 68250912 -53592944 - PB1D10 SINE Alu -1 116 1 4 1105 320 339 63 37 chr11 68251187 68251377 -53592479 - L1MC LINE L1 -2154 3992 3798 4 1105 294 179 0 0 chr11 68251646 68251702 -53592154 + GA-rich Low_complexity Low_complexity 1 56 0 4 1105 267 302 42 0 chr11 68255099 68255195 -53588661 + CT-rich Low_complexity Low_complexity 2 101 0 4 1105 797 326 25 49 chr11 68255250 68255534 -53588322 - B4A SINE B4 0 292 16 4 1105 302 283 0 0 chr11 68256174 68256234 -53587622 + B1F1 SINE Alu 11 70 -79 4 1105 201 185 19 0 chr11 68256370 68256424 -53587432 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 1105 689 327 59 62 chr11 68257410 68257733 -53586123 - MLT1J LTR MaLR -35 477 156 4 1105 465 246 175 57 chr11 68257936 68258147 -53585709 + B4A SINE B4 2 237 -55 4 1105 813 295 95 20 chr11 68258232 68258719 -53585137 + L1MB3 LINE L1 5664 6182 -1 4 1105 195 364 128 44 chr11 68258745 68258972 -53584884 - L3 LINE CR1 -956 3533 3288 4 1105 253 299 13 0 chr11 68259223 68259300 -53584556 + ID4_ SINE ID 2 79 -4 4 1105 820 111 14 29 chr11 68259541 68259680 -53584176 - URR1B DNA MER1_type 0 225 89 4 1105 198 103 0 0 chr11 68259986 68260015 -53583841 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1105 598 255 31 85 chr11 68260121 68260380 -53583476 - L1M5 LINE L1 -2326 5556 5296 4 1105 292 314 150 11 chr11 68260842 68261029 -53582827 - L3 LINE CR1 -2101 2388 2176 4 1105 675 67 0 0 chr11 68261223 68261312 -53582544 + (TCCA)n Simple_repeat Simple_repeat 3 91 0 4 1105 974 216 58 10 chr11 68261376 68261582 -53582274 - B3 SINE B2 0 216 1 4 1105 1253 48 0 0 chr11 68261613 68261760 -53582096 - B1_Mm SINE Alu 0 147 1 4 1105 441 332 186 25 chr11 68262097 68262508 -53581348 - MLT1G1 LTR MaLR -29 562 11 4 1105 630 39 0 0 chr11 68262554 68262631 -53581225 + (CTTTG)n Simple_repeat Simple_repeat 2 78 0 4 1105 508 224 86 0 chr11 68262640 68262756 -53581100 - B1F SINE Alu -19 130 5 4 1105 644 327 57 25 chr11 68266350 68266632 -53577224 + Charlie4a DNA MER1_type 89 379 -129 4 1105 329 217 452 20 chr11 68266700 68266846 -53577010 - B3 SINE B2 -7 209 1 4 1105 721 270 6 28 chr11 68266861 68267040 -53576816 - MTE2b LTR MaLR -204 175 1 4 1105 301 256 110 11 chr11 68267050 68267141 -53576715 + Charlie4a DNA MER1_type 386 485 -23 4 1105 212 0 36 0 chr11 68267142 68267170 -53576686 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1105 209 352 105 0 chr11 68267285 68267390 -53576466 + MIRb SINE MIR 65 180 -88 4 1105 233 289 149 75 chr11 68267671 68267832 -53576024 + L1MB7 LINE L1 5835 6007 -177 4 1105 230 281 101 0 chr11 68267869 68267958 -53575898 + L1MB7 LINE L1 6071 6168 -16 4 1105 914 277 47 32 chr11 68267979 68268267 -53575589 + L1MC LINE L1 3334 3633 -2513 4 1105 522 193 193 0 chr11 68268267 68268386 -53575470 - B1_Mur1 SINE Alu -7 142 1 4 1105 914 277 47 32 chr11 68268386 68268436 -53575420 + L1MC LINE L1 3634 3677 -2469 4 1105 775 251 6 6 chr11 68268511 68268683 -53575173 + ID_B1 SINE B4 2 173 -51 4 1105 463 204 99 30 chr11 68268595 68268696 -53575160 + PB1D10 SINE Alu 5 112 -5 4 1105 2461 276 72 50 chr11 68268741 68269902 -53573954 + L1MC LINE L1 3732 4918 -1228 4 1105 936 191 6 0 chr11 68269948 68270110 -53573746 + B3A SINE B2 1 163 -35 4 1105 243 214 0 18 chr11 68270118 68270175 -53573681 + CT-rich Low_complexity Low_complexity 1 56 0 4 1105 285 243 42 75 chr11 68270205 68270325 -53573531 + L1MC LINE L1 4979 5094 -1052 4 1105 419 154 124 62 chr11 68270561 68270658 -53573198 - MTE2a LTR MaLR 0 379 277 4 1105 576 277 29 0 chr11 68272079 68272216 -53571640 + RSINE1 SINE B4 3 143 -22 4 1105 180 0 0 0 chr11 68272220 68272240 -53571616 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1105 1055 211 19 0 chr11 68272262 68272471 -53571385 + B3 SINE B2 3 215 -1 4 1105 1149 305 97 23 chr11 68272716 68273373 -53570483 - L1ME2 LINE L1 -123 6041 5336 4 1105 413 110 12 0 chr11 68273394 68273476 -53570380 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1105 302 252 124 44 chr11 68273477 68273614 -53570242 - L1M4b LINE L1 -5410 1924 1777 4 1105 816 180 95 30 chr11 68273666 68273866 -53569990 - B3 SINE B2 -1 215 3 4 1105 1138 299 112 128 chr11 68273930 68274122 -53569734 - L1MDa LINE L1 -5066 1567 1360 4 1105 592 198 0 17 chr11 68274122 68274240 -53569616 - PB1D9 SINE Alu -1 119 4 5 1105 1138 299 112 128 chr11 68274240 68274330 -53569526 - L1MDa LINE L1 -5274 1359 1273 4 1105 1185 63 23 6 chr11 68274330 68274505 -53569351 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 5 1105 1138 299 112 128 chr11 68274505 68274633 -53569223 - L1MDa LINE L1 -5361 1272 1122 4 1105 579 224 35 76 chr11 68274633 68274831 -53569025 - B3A SINE B2 -8 190 1 5 1105 1138 299 112 128 chr11 68274831 68274904 -53568952 - L1MDa LINE L1 -5512 1121 1096 4 1105 246 62 0 0 chr11 68274904 68274936 -53568920 + (ATG)n Simple_repeat Simple_repeat 1 32 0 5 1105 1138 299 112 128 chr11 68274936 68274974 -53568882 - L1MDa LINE L1 -5538 1095 1090 4 1105 705 259 82 61 chr11 68274974 68275039 -53568817 - B4A SINE B4 -6 286 219 5 1105 414 85 0 0 chr11 68275039 68275098 -53568758 + (TTA)n Simple_repeat Simple_repeat 2 60 0 5 1105 705 259 82 61 chr11 68275098 68275312 -53568544 - B4A SINE B4 -74 218 2 5 1105 1138 299 112 128 chr11 68275312 68276286 -53567570 - L1MDa LINE L1 -5544 1089 93 4 1105 829 218 47 19 chr11 68276385 68276600 -53567256 + ID_B1 SINE B4 1 221 -3 5 1105 354 257 8 99 chr11 68276732 68276853 -53567003 - PB1D9 SINE Alu -8 112 3 5 1105 34 24 0 0 chr11 68277413 68277454 -53566402 + AT_rich Low_complexity Low_complexity 1 41 0 5 1105 464 182 268 16 chr11 68277677 68277800 -53566056 + RSINE1 SINE B4 3 156 -9 5 1105 245 294 165 65 chr11 68277851 68278051 -53565805 + MIRb SINE MIR 6 225 -43 5 1105 1399 148 0 5 chr11 68278152 68278370 -53565486 + URR1B DNA MER1_type 8 224 -1 5 1105 269 296 0 0 chr11 68278433 68278521 -53565335 - L1MB2 LINE L1 0 6171 6084 5 1105 649 291 99 0 chr11 68278522 68278704 -53565152 - ID_B1 SINE B4 -2 222 23 5 1105 1182 274 147 27 chr11 68278709 68278983 -53564873 - L1MB2 LINE L1 -66 6105 5808 5 1105 615 51 0 0 chr11 68278983 68279062 -53564794 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1105 1182 274 146 31 chr11 68279062 68279448 -53564408 - L1MB2 LINE L1 -364 5807 5398 5 1105 477 243 51 26 chr11 68279448 68279604 -53564252 - RSINE1 SINE B4 -1 164 5 5 1105 882 281 133 72 chr11 68279604 68279684 -53564172 - L1MB2 LINE L1 -783 5397 5322 5 1105 331 262 93 113 chr11 68279704 68279898 -53563958 - L1MB2 LINE L1 -855 5291 5102 5 1105 1389 231 53 28 chr11 68279898 68280034 -53563822 + ORR1D2 LTR MaLR 1 137 -233 5 1105 732 54 0 0 chr11 68280034 68280127 -53563729 + (ATG)n Simple_repeat Simple_repeat 2 94 0 5 1105 1389 231 53 28 chr11 68280127 68280351 -53563505 + ORR1D2 LTR MaLR 138 369 -1 5 1105 1210 90 62 6 chr11 68280658 68280837 -53563019 + B2_Mm2 SINE B2 1 189 -6 5 1105 195 42 0 0 chr11 68280917 68280941 -53562915 + (TTG)n Simple_repeat Simple_repeat 1 24 0 5 1105 906 211 38 19 chr11 68282100 68282312 -53561544 - B3 SINE B2 0 216 1 5 1105 340 290 43 53 chr11 68282997 68283061 -53560795 + MIR SINE MIR 3 81 -187 5 1105 2472 98 3 0 chr11 68283061 68283387 -53560469 + ORR1A2 LTR MaLR 1 327 0 5 1105 340 290 0 57 chr11 68283387 68283452 -53560404 + MIR SINE MIR 75 134 -128 5 1105 991 185 25 45 chr11 68283893 68284091 -53559765 - B3A SINE B2 0 198 5 5 1105 656 297 107 73 chr11 68284561 68284943 -53558913 - RMER13A LTR ERVK -371 489 95 5 1105 211 299 15 0 chr11 68285605 68285672 -53558184 + L2c LINE L2 3019 3086 -301 5 1105 286 374 13 14 chr11 68286323 68286481 -53557375 - MIR SINE MIR -79 183 33 5 1105 191 341 54 43 chr11 68287489 68287581 -53556275 + L2c LINE L2 3079 3171 -204 5 1105 239 310 17 0 chr11 68287911 68287969 -53555887 - ID4_ SINE ID 0 83 25 5 1106 502 248 58 0 chr11 68288595 68288716 -53555140 - B1F SINE Alu -21 128 1 5 1106 497 271 39 0 chr11 68288600 68288729 -53555127 - ID_B1 SINE B4 -23 201 68 5 1106 457 198 0 12 chr11 68290410 68290492 -53553364 + ID2 SINE ID 2 82 -1 5 1106 274 230 181 19 chr11 68290493 68290588 -53553268 + PB1D10 SINE Alu 32 132 -16 5 1106 834 162 0 75 chr11 68290747 68290907 -53552949 - B1_Mur4 SINE Alu 0 150 3 5 1106 930 141 171 40 chr11 68291329 68291528 -53552328 + URR1B DNA MER1_type 1 225 0 5 1106 1575 52 0 5 chr11 68291727 68291919 -53551937 - B2_Mm2 SINE B2 -1 194 4 5 1106 459 0 0 0 chr11 68292027 68292078 -53551778 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1106 527 219 29 0 chr11 68292091 68292196 -53551660 - RSINE1 SINE B4 -43 122 15 5 1106 306 230 33 44 chr11 68292676 68292767 -53551089 + PB1D7 SINE Alu 31 120 0 5 1106 274 274 0 0 chr11 68292771 68292833 -53551023 + GA-rich Low_complexity Low_complexity 3 64 0 5 1106 797 199 0 33 chr11 68293361 68293512 -53550344 + B1_Mur1 SINE Alu 2 147 -2 5 1106 270 0 0 0 chr11 68293737 68293767 -53550089 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1106 28 71 0 0 chr11 68293832 68293888 -53549968 + AT_rich Low_complexity Low_complexity 1 56 0 5 1106 829 259 5 39 chr11 68294234 68294439 -53549417 + B3A SINE B2 1 198 0 5 1106 920 191 0 0 chr11 68295536 68295683 -53548173 + B1_Mur2 SINE Alu 3 149 0 5 1106 234 0 0 0 chr11 68295683 68295709 -53548147 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1106 293 287 0 80 chr11 68296177 68296302 -53547554 + MIRb SINE MIR 37 151 -117 5 1106 623 156 0 6 chr11 68296315 68296381 -53547475 + polypyrimidine Low_complexity Low_complexity 96 161 0 5 1106 877 70 34 23 chr11 68296381 68296557 -53547299 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 5 1106 623 156 0 6 chr11 68296557 68296651 -53547205 + polypyrimidine Low_complexity Low_complexity 2 95 0 5 1106 221 263 83 0 chr11 68297220 68297302 -53546554 + MIR SINE MIR 13 108 -160 5 1106 919 300 14 35 chr11 68298375 68298665 -53545191 + B4A SINE B4 9 292 0 5 1106 465 19 0 0 chr11 68298777 68298831 -53545025 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1106 1025 170 110 30 chr11 68300307 68300507 -53543349 - B3 SINE B2 0 216 1 5 1106 347 267 66 41 chr11 68300584 68300705 -53543151 - MIRb SINE MIR -123 145 22 5 1106 469 220 99 0 chr11 68300785 68300876 -53542980 + PB1D10 SINE Alu 5 104 -13 5 1106 259 282 56 14 chr11 68301007 68301079 -53542777 - B1F SINE Alu -66 83 9 5 1106 405 39 0 0 chr11 68301101 68301152 -53542704 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1106 416 326 16 0 chr11 68301174 68301303 -53542553 - B1F SINE Alu -14 135 5 5 1106 275 341 0 23 chr11 68301543 68301630 -53542226 - Tigger7 DNA MER2_type -2 2489 2405 5 1106 277 247 104 0 chr11 68301817 68301894 -53541962 - Tigger7 DNA MER2_type -2375 116 32 5 1106 868 171 190 16 chr11 68302035 68302219 -53541637 - B3 SINE B2 0 216 1 5 1106 462 218 0 0 chr11 68302257 68302367 -53541489 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1106 197 304 0 0 chr11 68302372 68302418 -53541438 - MIR SINE MIR -59 203 158 5 1106 22 35 0 0 chr11 68302638 68302667 -53541189 + AT_rich Low_complexity Low_complexity 1 29 0 5 1106 677 260 138 0 chr11 68303357 68303553 -53540303 - ID_B1 SINE B4 -1 223 1 5 1106 423 247 124 60 chr11 68303581 68303766 -53540090 - B3A SINE B2 0 198 2 5 1106 311 264 201 94 chr11 68304527 68304761 -53539095 - MLT1J2 LTR MaLR -120 328 70 5 1106 531 213 55 9 chr11 68304857 68304966 -53538890 + PB1D10 SINE Alu 1 114 -3 5 1106 935 137 27 0 chr11 68304970 68305116 -53538740 + B1_Mur4 SINE Alu 1 150 0 5 1106 372 143 417 0 chr11 68308378 68308462 -53535394 + PB1D9 SINE Alu 2 120 0 5 1106 837 74 0 0 chr11 68310215 68310337 -53533519 + (CA)n Simple_repeat Simple_repeat 1 122 0 5 1106 195 293 17 0 chr11 68310473 68310531 -53533325 + MIRc SINE MIR 77 135 -133 5 1106 22 70 0 0 chr11 68311313 68311356 -53532500 + AT_rich Low_complexity Low_complexity 1 43 0 5 1106 936 184 64 11 chr11 68311407 68311594 -53532262 + B3A SINE B2 2 198 0 5 1106 918 237 33 58 chr11 68312648 68313023 -53530833 + MTD LTR MaLR 2 409 -10 5 1106 405 287 0 19 chr11 68313416 68313519 -53530337 - MIRb SINE MIR -92 176 76 5 1106 425 178 96 0 chr11 68313916 68313989 -53529867 + RSINE1 SINE B4 6 85 -80 5 1106 264 290 96 11 chr11 68313922 68314016 -53529840 + B3 SINE B2 11 112 -104 5 1106 360 0 0 0 chr11 68314250 68314290 -53529566 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1106 331 238 27 197 chr11 68315138 68315321 -53528535 - MLT1K LTR MaLR -22 573 422 5 1106 223 281 0 0 chr11 68315422 68315479 -53528377 + G-rich Low_complexity Low_complexity 6 62 0 5 1106 585 123 18 62 chr11 68315663 68315776 -53528080 - B1_Mur1 SINE Alu 0 149 42 5 1106 299 8 0 159 chr11 68315779 68315936 -53527920 + (CCCTG)n Simple_repeat Simple_repeat 4 135 0 5 1106 271 245 0 0 chr11 68315937 68315990 -53527866 - PB1D9 SINE Alu -66 54 2 5 1106 200 200 0 0 chr11 68316537 68316572 -53527284 + GA-rich Low_complexity Low_complexity 5 39 0 5 1106 262 337 51 34 chr11 68317036 68317211 -53526645 - MIRc SINE MIR -72 196 19 5 1106 276 213 0 32 chr11 68317749 68317812 -53526044 + ID4 SINE ID 2 62 -21 5 1106 587 60 12 0 chr11 68317829 68317913 -53525943 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 1106 435 19 0 0 chr11 68319084 68319136 -53524720 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1106 749 177 16 0 chr11 68319150 68319274 -53524582 - RSINE1 SINE B4 -38 127 2 5 1106 229 232 198 10 chr11 68319273 68319369 -53524487 - LTR40b LTR ERVL -3 459 346 5 1106 328 234 16 0 chr11 68319810 68319874 -53523982 - ID4 SINE ID -10 73 9 5 1106 241 307 97 103 chr11 68319842 68320027 -53523829 - ZP3AR Satellite Satellite -24 188 5 5 1106 279 246 192 62 chr11 68319990 68320120 -53523736 - B1F1 SINE Alu -1 148 2 5 1106 3152 67 19 9 chr11 68320442 68320861 -53522995 - L1Md_F2 LINE L1 0 6582 6160 5 1106 354 123 0 0 chr11 68321468 68321525 -53522331 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 5 1106 524 228 17 26 chr11 68321528 68321645 -53522211 - PB1D9 SINE Alu 0 120 5 5 1106 420 350 35 35 chr11 68321801 68322002 -53521854 - MER102b DNA MER1_type -76 265 65 5 1106 1260 311 72 12 chr11 68322219 68322622 -53521234 - MLT2B1 LTR ERVL -6 514 88 5 1106 454 325 84 38 chr11 68322622 68322859 -53520997 + ORR1E LTR MaLR 1 248 -111 5 1106 501 250 0 10 chr11 68322811 68322908 -53520948 - PB1D10 SINE Alu -20 97 2 5 1106 265 314 40 18 chr11 68322913 68323104 -53520752 + MTEb LTR MaLR 171 377 -2 6 1106 495 172 35 0 chr11 68323108 68323195 -53520661 - MLT2B1 LTR ERVL -425 90 1 5 1106 574 214 116 65 chr11 68323324 68323390 -53520466 + RSINE1 SINE B4 3 78 -87 6 1106 1538 185 194 0 chr11 68323390 68323720 -53520136 - ORR1B1 LTR MaLR 0 394 1 6 1106 574 214 116 65 chr11 68323720 68323808 -53520048 + RSINE1 SINE B4 79 165 0 6 1106 550 105 9 95 chr11 68324065 68324170 -53519686 - RMER4A LTR ERVK 0 466 371 6 1106 2673 144 2 45 chr11 68324168 68324632 -53519224 - RMER6B LTR ERVK -17 444 1 6 1106 441 0 0 0 chr11 68324639 68324688 -53519168 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1106 2058 125 29 17 chr11 68324688 68325027 -53518829 - RMER4A LTR ERVK -121 345 1 6 1106 241 357 42 36 chr11 68325027 68325070 -53518786 - MLT1L LTR MaLR -366 244 201 6 1106 9928 122 113 64 chr11 68325070 68325538 -53518318 - MurERV4-int LTR ERVK -722 4538 4043 6 1106 1349 64 0 0 chr11 68325538 68325709 -53518147 + L1Md_T LINE L1 6412 6582 0 6 1106 9928 122 113 64 chr11 68325709 68325918 -53517938 - MurERV4-int LTR ERVK -1218 4042 3814 6 1106 226 239 13 78 chr11 68325918 68325995 -53517861 - Charlie4a DNA MER1_type -321 187 116 6 1106 9928 122 113 64 chr11 68325995 68327259 -53516597 - MurERV4-int LTR ERVK -1218 3813 2421 6 1106 985 87 129 12 chr11 68327272 68327435 -53516421 - B2_Mm2 SINE B2 -1 194 13 6 1106 3652 147 69 15 chr11 68327436 68327984 -53515872 - MurERV4-int LTR ERVK -4495 765 179 6 1106 279 0 0 0 chr11 68327984 68328015 -53515841 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1106 3652 147 69 15 chr11 68328015 68328190 -53515666 - MurERV4-int LTR ERVK -5082 178 4 6 1106 635 308 15 51 chr11 68328338 68328533 -53515323 + B3A SINE B2 8 195 -3 6 1106 227 330 158 11 chr11 68328534 68328718 -53515138 - L2c LINE L2 -257 3130 2920 6 1106 195 284 97 10 chr11 68328808 68328911 -53514945 - L2c LINE L2 -656 2763 2652 6 1106 192 167 0 0 chr11 68329178 68329226 -53514630 + T-rich Low_complexity Low_complexity 1 48 0 6 1106 816 158 15 8 chr11 68329233 68329367 -53514489 - B1_Mus1 SINE Alu -13 135 1 6 1106 489 213 23 47 chr11 68329373 68329501 -53514355 - PB1 SINE Alu 0 127 3 6 1106 259 148 18 18 chr11 68329520 68329575 -53514281 - B1F1 SINE Alu 0 149 95 6 1106 22 35 0 0 chr11 68329618 68329647 -53514209 + AT_rich Low_complexity Low_complexity 1 29 0 6 1106 1097 157 126 23 chr11 68329795 68330010 -53513846 - ORR1D2 LTR MaLR 0 370 134 6 1106 554 307 71 37 chr11 68330037 68330540 -53513316 - L1MD2 LINE L1 -1380 5164 4652 6 1106 512 339 31 0 chr11 68330586 68330716 -53513140 - RSINE1 SINE B4 -29 136 3 6 1106 459 0 0 0 chr11 68330721 68330772 -53513084 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1106 630 272 147 3 chr11 68331058 68331357 -53512499 - L1MD2 LINE L1 -2136 4408 4067 6 1106 300 111 0 0 chr11 68331357 68331402 -53512454 + (TCC)n Simple_repeat Simple_repeat 1 45 0 6 1106 238 240 102 30 chr11 68331402 68331507 -53512349 - L1MD2 LINE L1 -2453 4091 3977 6 1106 582 293 107 0 chr11 68331522 68331672 -53512184 + B3A SINE B2 3 168 -30 6 1106 363 279 73 153 chr11 68331750 68332059 -53511797 - L1MD2 LINE L1 -3292 3252 2988 6 1106 772 221 170 6 chr11 68332059 68332241 -53511615 - B3 SINE B2 -4 212 1 6 1106 389 279 73 153 chr11 68332241 68332380 -53511476 - L1MD2 LINE L1 -3540 3004 2868 6 1106 195 100 0 0 chr11 68332380 68332410 -53511446 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1106 389 289 107 97 chr11 68332410 68332656 -53511200 - L1MD2 LINE L1 -3677 2867 2608 6 1106 597 286 0 7 chr11 68332656 68332804 -53511052 + B1F1 SINE Alu 1 147 -2 6 1106 389 221 101 48 chr11 68332804 68332960 -53510896 - L1MD2 LINE L1 -3937 2607 2462 6 1106 611 300 43 18 chr11 68333232 68333395 -53510461 - B3A SINE B2 -24 174 8 6 1106 346 367 41 24 chr11 68333448 68333618 -53510238 - L1MD2 LINE L1 -6292 255 83 6 1106 514 266 202 25 chr11 68333867 68334194 -53509662 - MLT1J1 LTR MaLR -4 444 15 6 1106 849 167 76 0 chr11 68334227 68334359 -53509497 + B1_Mur4 SINE Alu 3 144 -6 6 1106 333 0 0 0 chr11 68334364 68334401 -53509455 + (TAA)n Simple_repeat Simple_repeat 2 38 0 6 1106 245 301 138 38 chr11 68334862 68335021 -53508835 - Charlie8 DNA MER1_type -2207 221 47 6 1106 300 246 140 73 chr11 68335219 68335355 -53508501 + HAL1-3A_ME LINE L1 2295 2439 -419 6 1106 186 89 21 62 chr11 68335392 68335440 -53508416 + GA-rich Low_complexity Low_complexity 4 49 0 6 1106 221 341 37 0 chr11 68336001 68336083 -53507773 - L4 LINE RTE -190 1839 1755 6 1106 283 264 108 40 chr11 68336189 68336313 -53507543 - LTR16B2 LTR ERVL -7 473 337 6 1106 546 245 140 45 chr11 68336563 68336829 -53507027 - MER31B LTR ERV1 -2 464 62 6 1106 198 0 0 0 chr11 68336921 68336943 -53506913 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1106 1488 38 11 32 chr11 68336950 68337140 -53506716 + B2_Mm2 SINE B2 2 187 -8 6 1106 399 283 65 7 chr11 68337859 68338012 -53505844 + RSINE1 SINE B4 4 165 0 6 1106 400 266 0 22 chr11 68338326 68338507 -53505349 + (CATA)n Simple_repeat Simple_repeat 4 180 0 6 1106 203 244 0 0 chr11 68338511 68338552 -53505304 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1106 1086 316 22 6 chr11 68338554 68338866 -53504990 - Tigger7 DNA MER2_type -2170 321 5 6 1106 294 297 0 26 chr11 68339365 68339441 -53504415 - Tigger7 DNA MER2_type -2413 78 5 6 1106 297 293 27 41 chr11 68340035 68340181 -53503675 - MER113 DNA MER1_type -48 473 330 6 1106 308 134 324 7 chr11 68340764 68340861 -53502995 + B3A SINE B2 1 124 -69 6 1106 387 280 25 33 chr11 68343674 68343796 -53500060 - L1ME4a LINE L1 -24 6100 5980 6 1106 328 297 125 65 chr11 68343796 68344026 -53499830 - MIRm SINE MIR 0 268 27 6 1106 436 299 33 33 chr11 68345328 68345480 -53498376 - MIR SINE MIR -60 202 51 6 1106 299 259 99 0 chr11 68346497 68346578 -53497278 + MER103 DNA DNA 5 93 -73 6 1106 790 206 14 14 chr11 68346587 68346735 -53497121 + B1_Mur2 SINE Alu 2 149 0 6 1106 256 204 0 0 chr11 68346735 68346789 -53497067 + A-rich Low_complexity Low_complexity 1 54 0 6 1106 293 307 120 52 chr11 68347530 68347685 -53496171 - MIRc SINE MIR -99 169 7 6 1106 933 35 0 0 chr11 68348098 68348212 -53495644 + B1_Mus2 SINE Alu 33 146 -1 6 1106 379 189 15 0 chr11 68348293 68348425 -53495431 + GA-rich Low_complexity Low_complexity 1 134 0 6 1106 967 137 7 14 chr11 68348777 68348925 -53494931 - B1_Mus1 SINE Alu 0 148 2 6 1106 1005 91 0 0 chr11 68349129 68349352 -53494504 + (TG)n Simple_repeat Simple_repeat 1 223 0 6 1106 192 171 49 0 chr11 68349476 68349517 -53494339 - MIRc SINE MIR -137 131 89 6 1106 233 163 0 20 chr11 68349744 68349794 -53494062 + G-rich Low_complexity Low_complexity 4 52 0 6 1106 315 325 19 35 chr11 68349975 68350136 -53493720 - MIR SINE MIR -106 162 3 6 1106 264 311 43 32 chr11 68350399 68350492 -53493364 - RSINE1 SINE B4 -70 95 2 6 1106 337 358 135 77 chr11 68350545 68350938 -53492918 - L1M5 LINE L1 -1127 5019 4630 6 1106 805 270 20 36 chr11 68350938 68351134 -53492722 - B3A SINE B2 -5 193 1 6 1106 337 358 135 77 chr11 68351134 68351312 -53492544 - L1M5 LINE L1 -1517 4629 4415 6 1106 1014 129 0 0 chr11 68351914 68352053 -53491803 - B1_Mur3 SINE Alu -10 139 1 6 1106 1371 77 16 11 chr11 68352061 68352246 -53491610 - B2_Mm2 SINE B2 -7 188 3 6 1106 330 291 124 19 chr11 68352826 68352931 -53490925 - PB1D10 SINE Alu -1 116 1 6 1106 207 349 20 33 chr11 68352948 68353099 -53490757 - MIR3 SINE MIR -5 203 55 6 1106 560 226 35 0 chr11 68355046 68355161 -53488695 + PB1D7 SINE Alu 2 120 0 6 1106 680 168 26 0 chr11 68355352 68355465 -53488391 + B3 SINE B2 1 116 -100 6 1106 186 43 0 0 chr11 68355493 68355516 -53488340 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 6 1106 246 130 0 0 chr11 68355527 68355557 -53488299 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1106 1277 41 0 0 chr11 68355557 68355704 -53488152 - B1_Mus2 SINE Alu 0 147 1 6 1106 246 130 0 0 chr11 68355704 68355719 -53488137 + (T)n Simple_repeat Simple_repeat 1 15 0 6 1106 661 197 0 8 chr11 68355734 68355852 -53488004 - B1_Mur2 SINE Alu 0 149 33 6 1106 2621 145 86 30 chr11 68355850 68356325 -53487531 - RLTR12B LTR ERVK -26 502 1 6 1106 26 0 0 0 chr11 68356345 68356371 -53487485 + AT_rich Low_complexity Low_complexity 1 26 0 6 1106 861 142 8 0 chr11 68356371 68356505 -53487351 - B1_Mur2 SINE Alu 0 149 15 6 1106 543 301 57 19 chr11 68356536 68356800 -53487056 - L1MA8 LINE L1 -10 6281 6008 6 1106 256 241 19 0 chr11 68357042 68357096 -53486760 + CT-rich Low_complexity Low_complexity 3 57 0 6 1106 234 295 29 103 chr11 68357728 68357864 -53485992 + MT2B LTR ERVL 118 243 -358 6 1106 634 252 0 0 chr11 68357781 68357896 -53485960 + PB1D9 SINE Alu 5 119 -1 6 1106 662 55 11 0 chr11 68357903 68357994 -53485862 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 6 1106 241 273 124 38 chr11 68358761 68358911 -53484945 + MIR SINE MIR 85 254 -14 6 1106 234 179 0 0 chr11 68359065 68359104 -53484752 - 4.5SRNA scRNA scRNA -10 84 46 6 1106 1440 71 22 0 chr11 68360223 68360407 -53483449 + B2_Mm2 SINE B2 1 188 -7 6 1106 533 191 21 0 chr11 68360769 68360863 -53482993 + B1_Mur2 SINE Alu 17 112 -37 6 1106 252 86 0 0 chr11 68363198 68363233 -53480623 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1106 419 165 12 12 chr11 68363267 68363353 -53480503 - Lx8 LINE L1 -191 7282 7197 6 1106 1556 194 124 52 chr11 68363360 68363671 -53480185 - MTD LTR MaLR -2 417 81 6 1106 324 0 0 0 chr11 68363671 68363707 -53480149 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1106 1186 76 0 0 chr11 68363707 68363851 -53480005 - B1_Mus1 SINE Alu -4 144 1 6 1106 1556 194 124 52 chr11 68363851 68363925 -53479931 - MTD LTR MaLR -339 80 4 6 1106 678 158 24 0 chr11 68363925 68364052 -53479804 - Lx8 LINE L1 -297 7176 7047 6 1106 432 0 0 0 chr11 68365241 68365289 -53478567 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1106 201 278 37 0 chr11 68365656 68365710 -53478146 + MIRm SINE MIR 11 66 -210 6 1106 330 239 30 0 chr11 68365922 68365989 -53477867 + ID4 SINE ID 13 81 -2 6 1106 498 17 0 0 chr11 68366208 68366267 -53477589 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1106 666 223 16 8 chr11 68366279 68366404 -53477452 - RSINE1 SINE B4 -36 129 4 6 1106 2506 92 3 0 chr11 68366639 68366965 -53476891 - ORR1A2 LTR MaLR 0 327 1 6 1106 1101 166 74 26 chr11 68367118 68367347 -53476509 - ORR1D2 LTR MaLR -2 368 129 6 1106 834 125 0 8 chr11 68367356 68367485 -53476371 + B1_Mur4 SINE Alu 16 143 -7 6 1106 535 261 42 14 chr11 68367510 68367654 -53476202 - ORR1D2 LTR MaLR -206 153 6 6 1106 214 192 19 19 chr11 68367985 68368038 -53475818 + (CGGG)n Simple_repeat Simple_repeat 3 55 0 6 1106 252 0 0 0 chr11 68368181 68368209 -53475647 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1106 357 204 140 0 chr11 68368227 68368320 -53475536 - PB1D10 SINE Alu -7 110 5 7 1106 443 269 84 8 chr11 68368340 68368471 -53475385 - ID_B1 SINE B4 -2 222 82 7 1106 22 0 0 0 chr11 68368483 68368505 -53475351 + AT_rich Low_complexity Low_complexity 1 22 0 7 1106 591 260 30 117 chr11 68371760 68371795 -53472061 - B4 SINE B4 0 292 270 7 1106 279 0 0 0 chr11 68371795 68371826 -53472030 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1106 297 51 0 0 chr11 68371826 68371864 -53471992 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1106 591 260 30 117 chr11 68371864 68372058 -53471798 - B4 SINE B4 -23 269 83 7 1106 1579 52 0 0 chr11 68372081 68372274 -53471582 - B2_Mm1a SINE B2 0 193 1 7 1106 362 300 22 0 chr11 68372277 68372367 -53471489 - B4 SINE B4 -199 93 2 7 1106 270 0 0 0 chr11 68372878 68372908 -53470948 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1106 676 147 89 44 chr11 68372909 68373044 -53470812 - B1_Mur2 SINE Alu -6 143 3 7 1106 789 193 149 12 chr11 68373102 68373270 -53470586 + B3 SINE B2 1 191 -25 7 1106 441 0 0 0 chr11 68373572 68373621 -53470235 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1106 226 163 23 0 chr11 68373824 68373867 -53469989 - MLT1J1 LTR MaLR -329 115 72 7 1106 519 17 0 0 chr11 68373893 68373953 -53469903 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1106 483 295 14 41 chr11 68373971 68374116 -53469740 - RSINE1 SINE B4 -21 144 4 7 1106 314 296 153 0 chr11 68374749 68374868 -53468988 - MIRc SINE MIR -96 180 45 7 1106 502 241 61 14 chr11 68374871 68375018 -53468838 - RMER15 LTR ERVL 0 575 422 7 1106 256 167 15 77 chr11 68375155 68375220 -53468636 - Lx8 LINE L1 -347 7126 7066 7 1106 679 88 261 25 chr11 68375220 68375377 -53468479 + B3 SINE B2 1 193 -2 7 1106 884 213 39 53 chr11 68376572 68376780 -53467076 - B4A SINE B4 -76 216 12 7 1106 318 209 195 11 chr11 68376788 68376875 -53466981 - PB1D9 SINE Alu -13 107 5 7 1106 1077 108 0 0 chr11 68377608 68377756 -53466100 + B1_Mus1 SINE Alu 1 148 0 7 1106 222 118 0 0 chr11 68377757 68377791 -53466065 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 7 1106 311 315 27 9 chr11 68378234 68378346 -53465510 - MER103 DNA DNA -19 147 34 7 1106 303 358 0 24 chr11 68378489 68378612 -53465244 - MIRb SINE MIR -38 230 111 7 1106 748 247 31 21 chr11 68379394 68379588 -53464268 + B3A SINE B2 3 198 0 7 1106 585 0 0 0 chr11 68380000 68380065 -53463791 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1106 229 318 55 74 chr11 68380462 68380625 -53463231 - LTR88a LTR Gypsy -32 784 625 7 1106 262 269 140 0 chr11 68380966 68381059 -53462797 + MLT1A LTR MaLR 66 171 -203 7 1106 238 219 0 15 chr11 68381064 68381129 -53462727 + (CAGAGA)n Simple_repeat Simple_repeat 5 68 0 7 1106 411 306 24 60 chr11 68381185 68381352 -53462504 + RSINE1 SINE B4 4 164 -1 7 1106 314 138 17 0 chr11 68381352 68381410 -53462446 + (CCA)n Simple_repeat Simple_repeat 1 59 0 7 1106 780 221 21 0 chr11 68381601 68381746 -53462110 - B1_Mur3 SINE Alu 0 149 2 7 1106 208 143 0 0 chr11 68381782 68381817 -53462039 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1106 230 156 16 0 chr11 68382130 68382194 -53461662 + CT-rich Low_complexity Low_complexity 2 66 0 7 1106 447 73 0 0 chr11 68382243 68382311 -53461545 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1106 230 197 178 27 chr11 68382388 68382461 -53461395 + MLT1A LTR MaLR 296 379 -29 7 1106 358 314 73 56 chr11 68382546 68382725 -53461131 - L1M4 LINE L1 -3630 2516 2335 7 1106 992 205 82 0 chr11 68382844 68383039 -53460817 - B3 SINE B2 0 216 6 7 1106 498 284 67 52 chr11 68383154 68383416 -53460440 - RLTR12B LTR ERVK -43 525 272 7 1106 510 17 0 0 chr11 68383446 68383505 -53460351 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1106 590 228 3 85 chr11 68383505 68383702 -53460154 - RLTR11B LTR ERVK -165 276 89 7 1106 439 219 21 0 chr11 68384028 68384124 -53459732 - B1_Mur1 SINE Alu -5 144 47 7 1106 677 221 0 0 chr11 68384121 68384248 -53459608 - B1_Mur4 SINE Alu -23 127 1 7 1106 267 268 153 61 chr11 68384423 68384685 -53459171 + L1M4 LINE L1 586 871 -5671 7 1106 372 321 119 26 chr11 68384778 68384962 -53458894 + L1M4 LINE L1 870 1072 -5470 7 1106 432 0 0 0 chr11 68384962 68385010 -53458846 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1106 372 321 119 26 chr11 68385010 68385052 -53458804 + L1M4 LINE L1 1073 1116 -5426 7 1106 687 307 88 20 chr11 68385076 68385475 -53458381 + L1M4 LINE L1 1074 1499 -5043 7 1106 1442 70 0 26 chr11 68385841 68386032 -53457824 - B2_Mm2 SINE B2 -8 187 2 7 1106 829 208 28 0 chr11 68386485 68386629 -53457227 + B1_Mur1 SINE Alu 2 149 0 7 1106 302 220 0 33 chr11 68386636 68386697 -53457159 + B1_Mur4 SINE Alu 2 60 -90 7 1106 524 0 141 0 chr11 68386702 68386858 -53456998 + (CAGG)n Simple_repeat Simple_repeat 2 179 0 7 1106 651 159 28 0 chr11 68386891 68386998 -53456858 + B1_Mur3 SINE Alu 40 149 0 7 1106 920 163 0 6 chr11 68387014 68387157 -53456699 + polypurine Low_complexity Low_complexity 2 144 0 7 1106 1121 113 6 0 chr11 68387157 68387334 -53456522 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 7 1106 920 163 0 6 chr11 68387334 68387363 -53456493 + polypurine Low_complexity Low_complexity 145 173 0 7 1106 247 320 162 14 chr11 68388009 68388231 -53455625 + L1MC LINE L1 5614 5868 -2014 7 1106 342 226 174 51 chr11 68388407 68388505 -53455351 - PB1D9 SINE Alu -9 111 2 7 1106 1272 107 11 5 chr11 68388564 68388752 -53455104 - B2_Mm2 SINE B2 -5 190 2 7 1106 615 133 133 314 chr11 68388803 68389067 -53454789 + B3 SINE B2 1 216 0 7 1106 297 51 0 0 chr11 68389493 68389532 -53454324 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 7 1106 661 201 0 69 chr11 68389869 68390013 -53453843 - ORR1D1 LTR MaLR -239 135 2 7 1106 279 0 0 0 chr11 68390135 68390166 -53453690 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1106 4104 109 39 2 chr11 68390321 68390916 -53452940 - Lx2 LINE L1 -2 6995 6379 7 1106 262 128 0 0 chr11 68390919 68390966 -53452890 + Lx2B LINE L1 6370 6416 -584 7 1106 239 289 146 15 chr11 68390994 68391131 -53452725 + MIR3 SINE MIR 48 202 -6 7 1106 214 288 14 14 chr11 68391372 68391446 -53452410 + PB1D10 SINE Alu 24 97 -20 7 1106 833 264 36 45 chr11 68391471 68391693 -53452163 + ID_B1 SINE B4 5 224 0 7 1106 4405 153 19 3 chr11 68391832 68392553 -53451303 + Lx5 LINE L1 6243 6975 -75 7 1106 23 0 0 0 chr11 68392582 68392605 -53451251 + AT_rich Low_complexity Low_complexity 1 23 0 7 1106 701 245 133 0 chr11 68393581 68393769 -53450087 + B3 SINE B2 1 213 -3 7 1106 389 208 184 44 chr11 68393808 68393944 -53449912 - RSINE1 SINE B4 -8 157 3 7 1106 420 269 50 0 chr11 68394008 68394149 -53449707 - ORSL-2b DNA Tip100 -64 444 297 7 1106 236 254 56 0 chr11 68394188 68394259 -53449597 - ORSL-2b DNA Tip100 -214 294 220 7 1106 2953 65 26 10 chr11 68394683 68395073 -53448783 + MTA_Mm LTR MaLR 1 396 0 7 1106 309 323 93 128 chr11 68395080 68395183 -53448673 + RLTR40 LTR ERVK 50 143 -674 7 1106 1003 202 58 19 chr11 68395183 68395390 -53448466 - B3 SINE B2 -1 215 1 7 1106 309 323 93 128 chr11 68395390 68395679 -53448177 + RLTR40 LTR ERVK 144 428 -389 7 1106 1674 36 0 0 chr11 68395679 68395871 -53447985 - B2_Mm1a SINE B2 0 193 2 7 1106 309 323 93 128 chr11 68395871 68396017 -53447839 + RLTR40 LTR ERVK 429 570 -247 7 1106 337 272 107 41 chr11 68396312 68396480 -53447376 + L1M3 LINE L1 5435 5613 -571 7 1106 1112 103 0 7 chr11 68396481 68396616 -53447240 + B1_Mus2 SINE Alu 2 136 -11 7 1106 705 12 0 0 chr11 68396616 68396698 -53447158 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1106 1112 103 0 7 chr11 68396698 68396709 -53447147 + B1_Mus2 SINE Alu 137 147 0 7 1106 1323 143 41 14 chr11 68397930 68398150 -53445706 - URR1A DNA MER1_type 0 226 1 7 1106 2195 122 22 3 chr11 68398941 68399262 -53444594 - ORR1A2 LTR MaLR 0 327 1 7 1106 987 143 0 20 chr11 68400262 68400412 -53443444 + B1_Mus1 SINE Alu 1 147 -1 7 1106 568 279 0 54 chr11 68402810 68402977 -53440879 + RSINE1 SINE B4 3 160 -5 7 1106 197 367 47 39 chr11 68403295 68403434 -53440422 - MER5A DNA MER1_type -27 151 23 7 1106 513 0 0 0 chr11 68404853 68404910 -53438946 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1106 213 194 0 6 chr11 68405022 68405075 -53438781 - MIRc SINE MIR -93 115 64 7 1106 215 152 22 0 chr11 68405479 68405525 -53438331 + CT-rich Low_complexity Low_complexity 1 47 0 7 1106 370 339 75 40 chr11 68405665 68405893 -53437963 - L1ME3B LINE L1 -4851 1364 1153 7 1106 383 162 97 39 chr11 68405893 68405996 -53437860 - PB1D9 SINE Alu 0 120 12 7 1106 214 355 26 60 chr11 68405912 68406029 -53437827 - ID_B1 SINE B4 -48 176 64 7 1106 380 206 91 115 chr11 68406029 68406194 -53437662 - L1MC5 LINE L1 -951 7010 6850 7 1106 470 76 25 0 chr11 68406379 68406458 -53437398 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 7 1106 276 30 0 0 chr11 68406459 68406492 -53437364 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1106 232 354 0 0 chr11 68406492 68406557 -53437299 - tRNA-Ala-GCA tRNA tRNA -9 66 2 7 1106 348 197 16 0 chr11 68406501 68406562 -53437294 - ID4_ SINE ID -20 63 2 7 1106 452 198 13 84 chr11 68406562 68406680 -53437176 - B1F SINE Alu -2 147 40 7 1106 214 345 38 88 chr11 68407043 68407202 -53436654 + L2b LINE L2 3184 3334 -41 7 1106 302 369 28 62 chr11 68407268 68407447 -53436409 + MER5B DNA MER1_type 1 173 -5 7 1106 222 62 0 0 chr11 68407948 68407980 -53435876 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1106 406 222 0 0 chr11 68408695 68408767 -53435089 - B4A SINE B4 -219 73 2 7 1106 5693 17 0 0 chr11 68408864 68409498 -53434358 - L1Md_A LINE L1 0 6582 5949 7 1106 924 9 0 0 chr11 68409498 68409608 -53434248 + L1Md_A LINE L1 5846 5955 -627 7 1106 252 287 81 0 chr11 68409613 68409700 -53434156 - Charlie1b DNA MER1_type -278 245 152 7 1106 216 0 0 0 chr11 68410124 68410148 -53433708 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 1106 507 301 70 64 chr11 68410647 68410974 -53432882 + ORR1E LTR MaLR 27 355 -4 8 1106 233 267 75 109 chr11 68411571 68411718 -53432138 + B4A SINE B4 151 292 0 8 1106 378 0 0 0 chr11 68411786 68411828 -53432028 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1106 924 186 120 5 chr11 68411851 68412035 -53431821 + B3 SINE B2 5 209 -7 8 1106 904 146 7 0 chr11 68412037 68412174 -53431682 - B1_Mur2 SINE Alu 0 149 12 8 1106 21 0 0 0 chr11 68412190 68412211 -53431645 + AT_rich Low_complexity Low_complexity 1 21 0 8 1106 249 244 11 114 chr11 68412339 68412350 -53431506 + MT2B LTR ERVL 156 157 -444 8 1106 478 260 10 0 chr11 68412350 68412446 -53431410 + B1_Mur2 SINE Alu 2 98 -51 8 1106 784 142 65 29 chr11 68412676 68412814 -53431042 - B1_Mus1 SINE Alu -1 147 5 8 1106 428 284 8 45 chr11 68413180 68413311 -53430545 + B4A SINE B4 116 230 -62 8 1106 350 253 12 0 chr11 68413311 68413394 -53430462 + RSINE1 SINE B4 2 85 -80 8 1106 274 240 38 57 chr11 68413394 68413417 -53430439 + B2_Mm2 SINE B2 1 104 -91 8 1106 345 109 0 0 chr11 68413549 68413604 -53430252 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1106 702 282 204 18 chr11 68413608 68414005 -53429851 - MLT2F LTR ERVL -192 471 1 8 1106 263 71 24 0 chr11 68415624 68415666 -53428190 + (CCCCCA)n Simple_repeat Simple_repeat 2 44 0 8 1106 1018 271 82 97 chr11 68415956 68416442 -53427414 - MLT1E2 LTR MaLR -2 622 139 8 1106 306 318 14 92 chr11 68416485 68416627 -53427229 + ID_B1 SINE B4 49 179 -45 8 1106 539 214 64 55 chr11 68416546 68416655 -53427201 + PB1D10 SINE Alu 18 128 -22 8 1106 672 262 93 118 chr11 68416792 68417024 -53426832 - L1MB8 LINE L1 -148 6030 5823 8 1106 835 276 10 0 chr11 68417024 68417220 -53426636 - B3 SINE B2 -18 198 1 8 1106 672 262 93 118 chr11 68417220 68417451 -53426405 - L1MB8 LINE L1 -356 5822 5579 8 1106 2083 103 18 35 chr11 68417460 68417839 -53426017 + RLTR10A LTR ERVK 1 359 0 8 1106 651 243 119 0 chr11 68418838 68419023 -53424833 + B3 SINE B2 1 207 -9 8 1106 371 307 67 21 chr11 68419147 68419340 -53424516 - LTR37A LTR ERV1 -148 278 77 8 1106 1210 68 0 0 chr11 68419396 68419544 -53424312 + B1_Mus1 SINE Alu 1 148 0 8 138 540 111 0 0 chr11 68419545 68419626 -53424230 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 8 1107 263 319 284 29 chr11 68420059 68420357 -53423499 + L2a LINE L2 2867 3241 -185 8 1107 2666 102 35 15 chr11 68420357 68420754 -53423102 - MTB_Mm LTR MaLR 0 407 3 8 1107 192 335 94 59 chr11 68420754 68420854 -53423002 + L2a LINE L2 3242 3344 -82 8 1107 548 138 10 60 chr11 68420855 68420955 -53422901 - B1_Mur2 SINE Alu -1 148 54 8 1107 295 303 141 27 chr11 68421330 68421479 -53422377 - MIR SINE MIR 0 262 97 8 1107 923 199 53 0 chr11 68421494 68421665 -53422191 + B3 SINE B2 1 180 -36 8 1107 316 293 133 21 chr11 68421672 68421815 -53422041 + HAL1-3A_ME LINE L1 2286 2444 -414 8 1107 536 169 23 8 chr11 68421815 68421946 -53421910 + GA-rich Low_complexity Low_complexity 2 134 0 8 1107 571 235 45 8 chr11 68422511 68422644 -53421212 - B1F1 SINE Alu -8 141 4 8 1107 669 207 41 0 chr11 68422691 68422812 -53421044 + B1_Mur2 SINE Alu 2 127 -22 8 1107 387 83 0 0 chr11 68422813 68422873 -53420983 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1107 961 136 7 0 chr11 68423220 68423360 -53420496 + B1_Mus1 SINE Alu 2 142 -6 8 1107 270 274 0 0 chr11 68423980 68424042 -53419814 - MLT1G1 LTR MaLR -5 574 513 8 1107 210 71 0 0 chr11 68424043 68424071 -53419785 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 8 1107 397 274 119 13 chr11 68424300 68424459 -53419397 - MLT1G1 LTR MaLR -403 176 1 8 1107 609 269 20 75 chr11 68424700 68424901 -53418955 + B3A SINE B2 1 190 -8 8 1107 486 169 26 7 chr11 68424912 68425067 -53418789 + (CAGA)n Simple_repeat Simple_repeat 2 159 0 8 1107 2283 69 72 0 chr11 68425095 68425400 -53418456 + ORR1A2 LTR MaLR 1 327 0 8 1107 1224 86 58 0 chr11 68425632 68425806 -53418050 - B2_Mm2 SINE B2 -11 184 1 8 1107 921 275 33 89 chr11 68425868 68426259 -53417597 - MTEa LTR MaLR -10 369 1 8 1107 194 257 41 99 chr11 68427295 68427416 -53416440 + MIR3 SINE MIR 41 154 -54 8 1107 360 317 34 34 chr11 68427929 68428076 -53415780 - MIR SINE MIR -110 152 6 8 1107 2187 130 14 17 chr11 68428253 68428613 -53415243 + RLTR15 LTR ERVK 1 359 0 8 1107 308 161 0 16 chr11 68428699 68428762 -53415094 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 1107 550 202 43 121 chr11 68428774 68428915 -53414941 - RSINE1 SINE B4 -19 146 17 8 1107 755 283 24 5 chr11 68428938 68429144 -53414712 - B3 SINE B2 -4 212 3 8 1107 358 337 11 0 chr11 68429160 68429255 -53414601 - PB1D10 SINE Alu -16 101 6 8 1107 1095 175 0 89 chr11 68429580 68429793 -53414063 - URR1B DNA MER1_type -31 194 1 8 1107 827 174 51 0 chr11 68429906 68430044 -53413812 + B1_Mur1 SINE Alu 2 146 -3 8 1107 295 241 72 20 chr11 68430286 68430410 -53413446 + LTR16B LTR ERVL 333 454 -9 8 1107 346 378 83 35 chr11 68430747 68431145 -53412711 - L2 LINE L2 -668 2751 2335 8 1107 382 240 0 13 chr11 68431193 68431269 -53412587 + B3A SINE B2 1 75 -123 8 1107 829 241 42 51 chr11 68431299 68431322 -53412534 + B3 SINE B2 1 23 -193 8 1107 2384 128 9 65 chr11 68431322 68431755 -53412101 - RLTR9E LTR ERVK 0 409 1 8 1107 829 241 42 51 chr11 68431755 68431945 -53411911 + B3 SINE B2 24 212 -4 8 1107 827 207 7 0 chr11 68432022 68432162 -53411694 + B1_Mur1 SINE Alu 6 146 -3 8 1107 25 0 0 0 chr11 68432162 68432187 -53411669 + AT_rich Low_complexity Low_complexity 1 25 0 8 1107 273 279 11 44 chr11 68432199 68432289 -53411567 + L1M5 LINE L1 2577 2663 -3483 8 1107 268 233 67 0 chr11 68432366 68432456 -53411400 + L1M5 LINE L1 2799 2894 -3252 8 1107 220 311 0 75 chr11 68432460 68432540 -53411316 + B3A SINE B2 7 80 -118 8 1107 800 225 7 0 chr11 68432481 68432623 -53411233 + RSINE1 SINE B4 23 165 0 8 1107 21 0 0 0 chr11 68432653 68432674 -53411182 + AT_rich Low_complexity Low_complexity 1 21 0 8 1107 325 237 56 47 chr11 68432801 68432963 -53410893 + B4 SINE B4 16 217 -75 8 1107 450 146 35 35 chr11 68432979 68433064 -53410792 + PB1D7 SINE Alu 35 119 -1 8 1107 314 221 81 11 chr11 68433064 68433151 -53410705 + L1MD LINE L1 3072 3164 -2982 8 1107 547 309 57 133 chr11 68433158 68433670 -53410186 - RLTR12B LTR ERVK -17 511 39 8 1107 206 237 34 0 chr11 68433795 68433854 -53410002 + GA-rich Low_complexity Low_complexity 5 65 0 8 1107 441 316 82 33 chr11 68433855 68434100 -53409756 + L1MD LINE L1 3261 3517 -2629 8 1107 369 75 0 0 chr11 68434115 68434168 -53409688 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1107 958 233 93 4 chr11 68434176 68434413 -53409443 - B4A SINE B4 -32 260 3 8 1107 338 292 49 33 chr11 68434413 68434597 -53409259 + L1MA9 LINE L1 6120 6306 -6 8 1107 397 316 19 12 chr11 68434605 68434790 -53409066 + L1MD LINE L1 3508 3694 -2452 8 1107 1725 21 0 0 chr11 68434865 68435057 -53408799 - B2_Mm1t SINE B2 0 193 2 8 1107 1982 156 30 40 chr11 68435457 68435858 -53407998 + RMER10B LTR ERVL 2 398 0 8 1107 220 328 0 16 chr11 68436388 68436450 -53407406 + L2c LINE L2 3094 3154 -233 8 1107 225 0 0 0 chr11 68436930 68436955 -53406901 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1107 308 287 49 151 chr11 68438412 68438526 -53405330 + MER2B DNA MER2_type 3 96 -240 8 1107 255 221 176 0 chr11 68438526 68438594 -53405262 + ID4_ SINE ID 3 82 -1 8 1107 308 287 49 151 chr11 68438594 68438664 -53405192 + MER2B DNA MER2_type 97 168 -168 8 1107 468 51 0 0 chr11 68438751 68438810 -53405046 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1107 607 253 43 6 chr11 68438822 68438985 -53404871 + MER2 DNA MER2_type 82 250 -95 8 1107 1181 168 33 51 chr11 68439004 68439218 -53404638 - B3 SINE B2 -6 210 1 8 1107 619 206 0 9 chr11 68439490 68439598 -53404258 - B4A SINE B4 -62 230 124 8 1107 387 113 0 0 chr11 68439679 68439741 -53404115 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1107 1250 87 237 0 chr11 68439854 68440111 -53403745 + ORR1A2 LTR MaLR 1 318 -8 8 1107 282 334 4 96 chr11 68440124 68440285 -53403571 + ID_B1 SINE B4 41 180 -44 8 1107 415 224 28 89 chr11 68440181 68440298 -53403558 + PB1D7 SINE Alu 18 235 -76 8 1107 256 310 132 35 chr11 68440368 68440709 -53403147 - L1MC5 LINE L1 -51 7910 7537 8 1107 646 214 0 70 chr11 68441083 68441239 -53402617 + B1_Mur1 SINE Alu 2 146 -3 8 1107 220 286 0 71 chr11 68441339 68441437 -53402419 + G-rich Low_complexity Low_complexity 5 95 0 8 1107 485 188 198 0 chr11 68441490 68441591 -53402265 + B1_Mus1 SINE Alu 9 129 -19 8 1107 240 235 20 0 chr11 68441588 68441639 -53402217 + RMER17C LTR ERVK 35 86 -324 8 1107 456 35 0 0 chr11 68441893 68441951 -53401905 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1107 1224 28 28 0 chr11 68441991 68442135 -53401721 + B1_Mus1 SINE Alu 1 148 0 8 1107 567 78 0 0 chr11 68442166 68442243 -53401613 + (GGA)n Simple_repeat Simple_repeat 3 79 0 8 1107 1736 141 45 122 chr11 68442456 68442900 -53400956 - RMER17C LTR ERVK 0 410 1 8 1107 271 283 110 92 chr11 68442927 68443036 -53400820 + PB1D10 SINE Alu 1 111 -6 8 1107 449 268 16 47 chr11 68443212 68443341 -53400515 + RSINE1 SINE B4 41 165 0 8 1107 484 106 0 0 chr11 68443366 68443432 -53400424 + B1_Mus1 SINE Alu 1 66 -82 8 1107 1017 62 0 8 chr11 68443432 68443563 -53400293 - B1_Mus1 SINE Alu -17 131 2 8 1107 861 167 64 23 chr11 68443566 68443738 -53400118 - B3 SINE B2 0 216 38 8 1107 377 331 11 17 chr11 68443906 68444081 -53399775 + MLT1A1 LTR MaLR 235 408 0 9 1107 398 222 111 0 chr11 68444767 68444857 -53398999 + PB1D10 SINE Alu 2 101 -16 9 1107 613 250 13 39 chr11 68444857 68445011 -53398845 + RSINE1 SINE B4 12 161 -4 9 1107 21 36 0 0 chr11 68445139 68445167 -53398689 + AT_rich Low_complexity Low_complexity 1 28 0 9 1107 642 319 42 5 chr11 68445433 68445708 -53398148 + L1MD LINE L1 3555 3845 -2301 9 1107 382 366 124 21 chr11 68445922 68446193 -53397663 + MER115 DNA Tip100 277 576 -117 9 1107 359 188 29 0 chr11 68446193 68446262 -53397594 - ORR1C2 LTR MaLR 0 384 314 9 1107 390 240 73 0 chr11 68446715 68446811 -53397045 + PB1D10 SINE Alu 1 103 -14 9 1107 222 62 0 0 chr11 68446812 68446844 -53397012 + (CAAAC)n Simple_repeat Simple_repeat 5 36 0 9 1107 1067 157 64 25 chr11 68447054 68447256 -53396600 + B3 SINE B2 1 210 -6 9 1107 2895 146 18 28 chr11 68447612 68448107 -53395749 - RMER1B Other Other -1 1065 576 9 1107 266 276 30 52 chr11 68448163 68448297 -53395559 - L1MA9 LINE L1 -54 6258 6128 9 1107 244 300 73 51 chr11 68448298 68448435 -53395421 + RSINE1 SINE B4 3 142 -23 9 1107 35 0 0 0 chr11 68448455 68448490 -53395366 + AT_rich Low_complexity Low_complexity 1 35 0 9 1107 262 258 0 0 chr11 68448677 68448739 -53395117 - L1MA5 LINE L1 -19 6281 6220 9 1107 459 257 108 27 chr11 68448738 68448944 -53394912 - L1MA4 LINE L1 -19 6284 6077 9 1107 298 260 27 0 chr11 68448977 68449050 -53394806 - L1MC4 LINE L1 -724 7318 7244 9 1107 729 233 0 52 chr11 68449190 68449362 -53394494 - RSINE1 SINE B4 0 165 3 9 1107 216 0 0 0 chr11 68449878 68449902 -53393954 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1107 8343 62 16 1 chr11 68449969 68451191 -53392665 + L1_Mus3 LINE L1 5403 6638 0 9 1107 336 287 47 2 chr11 68452391 68452499 -53391357 + AluG_3 SINE Alu 137 225 -86 9 1107 441 0 0 0 chr11 68452626 68452675 -53391181 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 1107 243 0 0 0 chr11 68452675 68452701 -53391155 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1107 188 146 49 0 chr11 68452702 68452743 -53391113 + CT-rich Low_complexity Low_complexity 1 43 0 9 1107 1286 78 0 6 chr11 68452743 68452924 -53390932 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1107 1184 41 0 0 chr11 68452943 68453089 -53390767 + B1_Mus2 SINE Alu 1 146 -1 9 1107 836 235 9 29 chr11 68453111 68453321 -53390535 - B3 SINE B2 -10 206 1 9 1107 401 262 48 102 chr11 68453484 68453682 -53390174 + MTEa LTR MaLR 5 184 -195 9 1107 210 91 0 0 chr11 68453706 68453739 -53390117 + (TC)n Simple_repeat Simple_repeat 1 33 0 9 1107 490 251 38 33 chr11 68453739 68453941 -53389915 + MTEa LTR MaLR 166 379 0 9 1107 295 275 59 26 chr11 68454266 68454376 -53389480 - MIR SINE MIR -3 259 146 9 1107 642 195 68 40 chr11 68454376 68454552 -53389304 + B2_Mm2 SINE B2 1 181 -14 9 1107 295 275 59 26 chr11 68454552 68454594 -53389262 - MIR SINE MIR -117 145 102 9 1107 512 208 184 0 chr11 68454594 68454719 -53389137 + B1_Mur1 SINE Alu 2 149 0 9 1107 216 357 138 28 chr11 68455250 68455642 -53388214 - L2c LINE L2 0 3387 2953 9 1107 705 226 83 147 chr11 68455791 68456103 -53387753 + B4A SINE B4 1 292 0 9 1107 226 234 31 0 chr11 68456104 68456168 -53387688 + (CA)n Simple_repeat Simple_repeat 2 67 0 9 1107 232 333 8 33 chr11 68456482 68456603 -53387253 + MER3 DNA MER1_type 24 141 -68 9 1107 550 227 270 0 chr11 68456701 68456864 -53386992 + B3 SINE B2 1 207 -9 9 1107 436 320 46 39 chr11 68457300 68457453 -53386403 + RSINE1 SINE B4 12 165 0 9 1107 185 343 56 47 chr11 68457812 68457919 -53385937 - MIRb SINE MIR -46 222 115 9 1107 723 163 0 15 chr11 68458166 68458297 -53385559 - B1_Mus1 SINE Alu -1 147 19 9 1107 356 245 25 109 chr11 68458201 68458320 -53385536 - MT2B LTR ERVL -337 264 156 9 1107 274 180 20 0 chr11 68459484 68459534 -53384322 + MIRm SINE MIR 109 159 -117 9 1107 265 272 75 11 chr11 68459747 68459840 -53384016 + MER103 DNA DNA 24 122 -44 9 1107 466 243 307 53 chr11 68459949 68460232 -53383624 - ORR1E LTR MaLR -4 355 1 9 1107 307 224 13 13 chr11 68460269 68460346 -53383510 - L1MB3 LINE L1 -110 6073 5997 9 1107 428 283 25 32 chr11 68460373 68460530 -53383326 - L1MB3 LINE L1 -295 5888 5733 9 1107 198 0 0 0 chr11 68460543 68460565 -53383291 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 1107 333 0 0 0 chr11 68460583 68460620 -53383236 + (GGTTG)n Simple_repeat Simple_repeat 2 38 0 9 1107 24 0 0 0 chr11 68460688 68460712 -53383144 + AT_rich Low_complexity Low_complexity 1 24 0 9 1107 266 281 5 0 chr11 68461102 68461175 -53382681 - ID4 SINE ID -58 94 19 9 1107 356 21 42 0 chr11 68461175 68461223 -53382633 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 9 1107 2151 143 36 2 chr11 68461223 68461616 -53382240 - RMER10A LTR ERVL -16 426 19 9 1107 207 0 0 0 chr11 68461616 68461639 -53382217 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 9 1107 2151 143 36 2 chr11 68461639 68461657 -53382199 - RMER10A LTR ERVL -424 18 2 9 1107 183 139 0 0 chr11 68461740 68461776 -53382080 + (CCCCCT)n Simple_repeat Simple_repeat 1 36 0 9 1107 597 229 30 50 chr11 68461866 68462068 -53381788 - B3A SINE B2 0 198 1 9 1107 24 0 0 0 chr11 68462705 68462729 -53381127 + AT_rich Low_complexity Low_complexity 1 24 0 9 1107 1585 38 0 11 chr11 68462730 68462916 -53380940 + B2_Mm1a SINE B2 2 185 -8 9 1107 477 231 9 63 chr11 68462957 68463068 -53380788 - RSINE1 SINE B4 -57 108 4 9 1107 21 0 0 0 chr11 68463068 68463089 -53380767 + AT_rich Low_complexity Low_complexity 1 21 0 9 1107 306 0 0 0 chr11 68463090 68463124 -53380732 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1107 288 179 0 0 chr11 68463124 68463180 -53380676 - RSINE1 SINE B4 -41 124 69 9 1107 315 85 0 0 chr11 68463217 68463264 -53380592 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 9 1107 230 213 229 0 chr11 68463276 68463337 -53380519 + PB1D10 SINE Alu 36 110 -7 9 1107 288 127 0 0 chr11 68463610 68463665 -53380191 + (A)n Simple_repeat Simple_repeat 1 55 0 9 1107 273 237 75 17 chr11 68463681 68463801 -53380055 + Tigger15a DNA TcMar 568 694 -21 9 1107 1913 99 75 0 chr11 68463857 68464151 -53379705 - ORR1A2 LTR MaLR -8 319 4 9 1107 11678 123 42 8 chr11 68464154 68466053 -53377803 - ORR1A2-int LTR MaLR 0 1963 1 9 1107 2271 97 55 0 chr11 68466053 68466363 -53377493 - ORR1A2 LTR MaLR 0 327 1 9 1107 457 219 21 2 chr11 68466387 68466510 -53377346 + B1_Mur4 SINE Alu 2 125 -24 9 1107 412 229 0 0 chr11 68466623 68466706 -53377150 - ID4 SINE ID 0 83 1 9 1107 260 0 57 0 chr11 68466920 68466955 -53376901 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 9 1107 620 305 170 39 chr11 68467124 68467227 -53376629 + L1MA7 LINE L1 5512 5618 -562 9 1107 1309 217 140 24 chr11 68467227 68467362 -53376494 + ORR1D1 LTR MaLR 1 163 -211 9 1107 312 27 0 0 chr11 68467362 68467399 -53376457 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1107 1309 217 140 24 chr11 68467399 68467598 -53376258 + ORR1D1 LTR MaLR 164 373 -1 9 1107 888 269 57 28 chr11 68467598 68467944 -53375912 + L1MA7 LINE L1 5619 6017 -163 9 1107 476 361 24 14 chr11 68467947 68468151 -53375705 + MTD LTR MaLR 5 210 -209 9 1107 542 276 17 0 chr11 68468151 68468267 -53375589 + B3A SINE B2 1 118 -80 9 1107 429 245 41 94 chr11 68468371 68468542 -53375314 + MER53 DNA hAT 24 185 -8 9 1107 639 170 53 66 chr11 68468702 68468853 -53375003 + B1_Mur2 SINE Alu 1 149 0 9 1107 836 178 12 0 chr11 68469815 68469984 -53373872 + GA-rich Low_complexity Low_complexity 3 173 0 9 1107 192 390 0 0 chr11 68470533 68470610 -53373246 + MIR SINE MIR 71 147 -115 9 1107 535 352 45 29 chr11 68470658 68470971 -53372885 - MLT1I LTR MaLR -35 376 59 9 1107 27 29 0 0 chr11 68471309 68471343 -53372513 + AT_rich Low_complexity Low_complexity 1 34 0 9 1107 519 17 0 0 chr11 68471757 68471817 -53372039 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1107 710 268 111 0 chr11 68471826 68472024 -53371832 - B4 SINE B4 -70 222 3 9 1107 926 321 72 34 chr11 68472549 68472850 -53371006 + MLT1C LTR MaLR 4 326 -141 9 1107 850 145 194 97 chr11 68472850 68472904 -53370952 - URR1A DNA MER1_type 0 226 176 9 1107 1083 75 0 14 chr11 68472904 68473052 -53370804 + B1_Mm SINE Alu 2 147 0 9 1107 850 145 194 97 chr11 68473052 68473203 -53370653 - URR1A DNA MER1_type -51 175 1 9 1107 926 321 72 34 chr11 68473203 68473346 -53370510 + MLT1C LTR MaLR 327 465 -2 9 1107 546 181 0 0 chr11 68473899 68474004 -53369852 + (TA)n Simple_repeat Simple_repeat 1 105 0 9 1107 287 256 0 29 chr11 68474007 68474108 -53369748 - MLT1C LTR MaLR 0 467 295 9 1107 269 281 10 30 chr11 68474119 68474218 -53369638 - MLT1C LTR MaLR -352 115 19 9 1107 225 179 18 18 chr11 68474725 68474782 -53369074 + MLT1A1 LTR MaLR 342 398 -10 9 1107 1208 125 27 0 chr11 68474950 68475134 -53368722 - B2_Mm1a SINE B2 -4 189 1 9 1107 645 291 92 55 chr11 68475282 68475697 -53368159 + MLT1K LTR MaLR 132 561 -34 9 1107 183 227 79 129 chr11 68476031 68476132 -53367724 - MIRc SINE MIR -49 219 124 9 1107 634 190 123 7 chr11 68476602 68476740 -53367116 - RSINE1 SINE B4 -10 155 2 9 1107 22 0 0 0 chr11 68476744 68476766 -53367090 + AT_rich Low_complexity Low_complexity 1 22 0 9 1107 5629 34 1 0 chr11 68476783 68477437 -53366419 - L1_Mus1 LINE L1 0 6567 5913 9 1107 476 186 40 30 chr11 68477560 68477660 -53366196 + PB1D9 SINE Alu 1 101 -19 9 1107 603 0 0 0 chr11 68477802 68477869 -53365987 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 9 1107 537 335 154 18 chr11 68478120 68478555 -53365301 - MLT1H1 LTR MaLR -37 518 25 9 1107 363 324 19 0 chr11 68478665 68478773 -53365083 - L2a LINE L2 -2 3424 3315 9 1107 874 169 221 0 chr11 68479337 68479509 -53364347 + B3 SINE B2 1 210 -6 9 1107 25 0 0 0 chr11 68479509 68479534 -53364322 + AT_rich Low_complexity Low_complexity 1 25 0 9 1107 1652 198 54 91 chr11 68479617 68480044 -53363812 - MTD LTR MaLR -8 411 1 9 1107 4156 215 82 80 chr11 68480044 68481299 -53362557 - MTD-int LTR MaLR 0 1258 1 9 1107 1542 212 124 19 chr11 68481299 68481678 -53362178 - MTD LTR MaLR 0 419 1 9 1107 470 218 62 31 chr11 68481681 68481809 -53362047 + B1F2 SINE Alu 17 148 -1 1 1107 412 321 0 30 chr11 68481809 68481944 -53361912 + RSINE1 SINE B4 3 133 -32 1 1107 294 143 0 0 chr11 68481974 68482023 -53361833 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1 1107 463 266 113 17 chr11 68482092 68482207 -53361649 + B3A SINE B2 23 148 -50 1 1107 845 225 71 0 chr11 68482208 68482390 -53361466 + Lx8 LINE L1 6998 7192 -281 1 1107 1072 119 11 0 chr11 68482402 68482579 -53361277 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1107 349 351 94 0 chr11 68482733 68482935 -53360921 + Zaphod DNA Tip100 29 249 -3782 1 1107 3006 133 18 50 chr11 68483003 68483548 -53360308 - RLTR11A LTR ERVK 0 528 1 1 1107 5494 207 35 13 chr11 68483548 68484801 -53359055 - MYSERV16_I-int LTR ERVK 0 2326 1046 1 1107 326 269 32 48 chr11 68484805 68484930 -53358926 - RMER4A LTR ERVK -44 422 300 1 1107 502 217 0 6 chr11 68484943 68485062 -53358794 - MYSERV16_I-int LTR ERVK -389 5391 5287 1 1107 335 287 0 0 chr11 68485070 68485157 -53358699 + Zaphod DNA Tip100 315 401 -3630 1 1107 863 246 6 110 chr11 68485197 68485516 -53358340 + RLTR11B LTR ERVK 4 289 -164 1 1107 386 265 33 56 chr11 68485534 68485706 -53358150 + RLTR11B LTR ERVK 284 494 -34 1 1107 241 315 126 0 chr11 68485758 68485869 -53357987 - ID_B1 SINE B4 0 224 100 1 1107 477 232 70 0 chr11 68485771 68485886 -53357970 - B1_Mur1 SINE Alu -26 123 2 1 1107 785 231 21 85 chr11 68485945 68486181 -53357675 - B4 SINE B4 -69 223 3 1 1107 307 261 27 101 chr11 68486225 68486374 -53357482 - L1MC LINE L1 -2362 5520 5383 1 1107 505 290 47 12 chr11 68486381 68486552 -53357304 - MTD LTR MaLR -225 194 18 1 1107 938 158 44 28 chr11 68486848 68487030 -53356826 + B2_Mm2 SINE B2 1 185 -10 1 1107 229 298 42 11 chr11 68487521 68487616 -53356240 + MIRb SINE MIR 163 260 -8 1 1107 978 240 18 18 chr11 68487686 68487907 -53355949 + ID_B1 SINE B4 3 223 -1 1 1107 836 230 40 15 chr11 68487915 68488114 -53355742 + B3 SINE B2 2 205 -11 1 1107 220 218 89 13 chr11 68489204 68489283 -53354573 + MIR SINE MIR 28 112 -96 1 1107 1578 244 22 11 chr11 68489648 68490016 -53353840 - MTEa LTR MaLR -4 375 4 1 1107 565 225 0 0 chr11 68490455 68490566 -53353290 + PB1D9 SINE Alu 2 112 -8 1 1107 674 296 59 0 chr11 68490837 68491023 -53352833 + B3 SINE B2 1 197 -19 1 1107 518 222 0 0 chr11 68491568 68491667 -53352189 - B1_Mur2 SINE Alu -4 145 47 1 1107 1369 171 266 10 chr11 68492035 68492336 -53351520 - ORR1C1 LTR MaLR 0 378 1 1 1107 1291 139 87 0 chr11 68492525 68492733 -53351123 + URR1A DNA MER1_type 1 226 0 1 1107 218 32 32 0 chr11 68493215 68493246 -53350610 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1107 612 213 8 16 chr11 68493248 68493377 -53350479 - B1_Mur4 SINE Alu -15 135 8 1 1107 539 231 17 8 chr11 68493401 68493516 -53350340 - B3 SINE B2 -11 205 90 1 1107 4417 127 104 18 chr11 68493516 68493753 -53350103 + RMER19B LTR ERVK 1 236 -666 1 1107 240 59 0 0 chr11 68493753 68493787 -53350069 + (CCAA)n Simple_repeat Simple_repeat 3 36 0 1 1107 4417 127 104 18 chr11 68493787 68494369 -53349487 + RMER19B LTR ERVK 237 889 -13 1 1107 349 210 86 0 chr11 68494369 68494450 -53349406 - B3 SINE B2 -106 110 23 1 1107 4161 176 78 87 chr11 68494466 68495503 -53348353 - RMER1A Other Other -2 1028 1 1 1107 736 230 45 11 chr11 68495503 68495679 -53348177 - RMER1A Other Other -779 251 70 1 1107 1228 271 55 25 chr11 68495686 68496147 -53347709 - RMER1B Other Other -546 520 45 1 1107 2585 125 95 5 chr11 68496148 68496591 -53347265 + RMER19C LTR ERVK 129 611 0 1 1107 308 189 14 0 chr11 68496607 68496681 -53347175 + CT-rich Low_complexity Low_complexity 3 77 0 1 1107 736 261 47 114 chr11 68497024 68497517 -53346339 - RLTR11A2 LTR ERVK -34 494 3 1 1107 399 250 53 9 chr11 68498034 68498147 -53345709 + B1_Mus1 SINE Alu 25 142 -6 1 1107 1232 54 0 0 chr11 68498258 68498406 -53345450 + B1_Mus1 SINE Alu 1 148 0 1 1107 186 128 0 0 chr11 68498406 68498445 -53345411 + (CAAAC)n Simple_repeat Simple_repeat 5 43 0 1 1107 27 0 0 0 chr11 68498516 68498543 -53345313 + AT_rich Low_complexity Low_complexity 1 27 0 1 1107 745 216 108 5 chr11 68498548 68498734 -53345122 - B3 SINE B2 0 216 12 1 1107 36 23 0 0 chr11 68498742 68498785 -53345071 + AT_rich Low_complexity Low_complexity 1 43 0 1 1107 1140 70 21 0 chr11 68498788 68498931 -53344925 + B1_Mus2 SINE Alu 2 147 0 1 1107 1323 68 50 17 chr11 68498991 68499171 -53344685 + B2_Mm2 SINE B2 2 187 -8 1 1107 303 283 65 9 chr11 68500195 68500302 -53343554 + MLT2B3 LTR ERVL 3 115 -439 1 1107 369 297 68 61 chr11 68500214 68500361 -53343495 + MTEa LTR MaLR 22 169 -210 2 1107 194 0 39 0 chr11 68500468 68500494 -53343362 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1107 1144 58 0 0 chr11 68500494 68500632 -53343224 - B1_Mus2 SINE Alu -9 138 1 4 1107 1152 61 0 51 chr11 68500828 68500984 -53342872 + B1_Mus1 SINE Alu 1 148 0 5 1107 208 317 171 9 chr11 68501150 68501255 -53342601 + L2b LINE L2 3241 3362 -13 6 1107 303 179 35 23 chr11 68501336 68501431 -53342425 - B1_Mur3 SINE Alu -10 139 43 7 1107 285 284 12 24 chr11 68501608 68501691 -53342165 + ID2 SINE ID 2 83 0 8 1107 1079 82 19 0 chr11 68501858 68502016 -53341840 - B2_Mm2 SINE B2 -6 189 29 9 1107 952 270 86 90 chr11 68502082 68502881 -53340975 - L1MB8 LINE L1 0 6178 5383 1 1107 279 288 88 0 chr11 68503587 68503667 -53340189 + 5S rRNA rRNA 4 90 -31 1 1107 23 54 0 0 chr11 68504374 68504411 -53339445 + AT_rich Low_complexity Low_complexity 1 37 0 1 1107 233 289 108 48 chr11 68504467 68504634 -53339222 - ORSL-2b DNA Tip100 -310 198 22 1 1107 354 264 66 66 chr11 68508270 68508436 -53335420 + MIR SINE MIR 61 226 -36 1 1107 380 328 0 25 chr11 68509072 68509191 -53334665 + ID_B1 SINE B4 78 193 -31 1 1107 297 0 0 0 chr11 68509802 68509835 -53334021 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1107 234 0 0 0 chr11 68509912 68509938 -53333918 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1 1107 386 244 37 167 chr11 68510075 68510149 -53333707 + MER5A DNA MER1_type 2 69 -120 1 1107 1114 158 69 30 chr11 68510149 68510351 -53333505 + B3 SINE B2 2 211 -5 1 1107 386 244 37 167 chr11 68510351 68510492 -53333364 + MER5A DNA MER1_type 70 189 0 1 1107 409 266 19 112 chr11 68510623 68510784 -53333072 - Charlie4z DNA MER1_type -17 150 5 2 1107 3114 129 53 62 chr11 68511358 68511938 -53331918 - RMER15 LTR ERVL 0 575 1 2 1107 558 179 99 33 chr11 68513261 68513382 -53330474 - B1_Mur3 SINE Alu -20 129 1 2 1107 433 250 0 59 chr11 68513798 68513917 -53329939 + PB1D7 SINE Alu 2 113 -7 2 1107 1287 138 19 19 chr11 68513924 68514139 -53329717 + B3 SINE B2 2 216 0 2 1107 182 322 21 75 chr11 68514412 68514506 -53329350 - L2c LINE L2 -182 3205 3117 2 1107 1355 172 212 9 chr11 68514889 68515205 -53328651 - ORR1C2 LTR MaLR 0 384 5 2 1107 454 280 27 34 chr11 68515540 68515688 -53328168 + B4 SINE B4 115 261 -31 2 1107 721 113 14 0 chr11 68515690 68515831 -53328025 + (TC)n Simple_repeat Simple_repeat 2 144 0 2 1107 285 98 0 0 chr11 68515831 68515872 -53327984 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1107 567 247 6 71 chr11 68516050 68516220 -53327636 + B4A SINE B4 66 224 -68 3 1107 207 299 28 55 chr11 68516356 68516501 -53327355 + (CATG)n Simple_repeat Simple_repeat 2 142 0 3 1107 688 281 80 123 chr11 68517388 68517472 -53326384 - B4A SINE B4 -2 290 223 3 1107 1094 176 83 25 chr11 68517472 68517676 -53326180 - B3 SINE B2 0 216 1 3 1107 688 281 80 123 chr11 68517676 68517891 -53325965 - B4A SINE B4 -70 222 4 3 1107 225 0 0 0 chr11 68517964 68517989 -53325867 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1107 443 254 119 0 chr11 68517989 68518123 -53325733 - ID_B1 SINE B4 0 224 75 3 1107 1382 90 0 16 chr11 68518151 68518343 -53325513 - B2_Mm1a SINE B2 -3 190 2 3 1107 918 146 7 14 chr11 68518414 68518560 -53325296 - B1_Mur1 SINE Alu -1 148 4 3 1107 2361 159 121 79 chr11 68518568 68519128 -53324728 - RMER4B LTR ERVK 0 585 2 3 1107 24 53 0 0 chr11 68519138 68519176 -53324680 + AT_rich Low_complexity Low_complexity 1 38 0 3 1107 470 212 38 0 chr11 68519305 68519487 -53324369 + B4 SINE B4 1 219 -73 4 1107 2792 72 11 8 chr11 68519496 68519873 -53323983 + L1Md_F2 LINE L1 6205 6582 0 4 1107 243 167 130 0 chr11 68519925 68519979 -53323877 - L1M5 LINE L1 -3552 2594 2534 4 1107 1397 287 70 28 chr11 68520107 68520710 -53323146 + Charlie1a DNA MER1_type 1 628 -827 4 1107 283 244 88 55 chr11 68520747 68520838 -53323018 + Charlie1a DNA MER1_type 1041 1134 -321 4 1107 321 289 12 12 chr11 68520841 68520925 -53322931 - PB1D10 SINE Alu -31 86 3 4 1107 771 153 71 28 chr11 68521121 68521262 -53322594 - B1_Mur4 SINE Alu -2 148 2 4 1107 625 208 93 2 chr11 68521432 68521614 -53322242 - B3 SINE B2 -1 197 2 4 1107 1467 173 154 30 chr11 68521677 68522041 -53321815 - MTD LTR MaLR -5 414 6 4 1107 424 267 150 63 chr11 68522110 68522144 -53321712 - L1M5 LINE L1 -1797 4349 4323 4 1107 1942 31 0 0 chr11 68522144 68522370 -53321486 - L1Md_F2 LINE L1 -11 6571 6346 4 1107 424 267 150 63 chr11 68522370 68522635 -53321221 - L1M5 LINE L1 -1824 4322 4024 4 1107 476 147 176 0 chr11 68522635 68522737 -53321119 + PB1D9 SINE Alu 1 120 0 5 1107 634 194 60 0 chr11 68522748 68522882 -53320974 + B1_Mur4 SINE Alu 3 144 -6 5 1107 318 293 68 0 chr11 68523405 68523538 -53320318 - L1M5 LINE L1 -2665 3481 3340 4 1107 347 305 138 34 chr11 68523767 68524296 -53319560 - L1M5 LINE L1 -3006 3140 2557 4 1107 189 0 0 0 chr11 68524782 68524803 -53319053 + (TTTTTG)n Simple_repeat Simple_repeat 5 25 0 5 1107 834 141 7 7 chr11 68524803 68524939 -53318917 - B1_Mus1 SINE Alu 0 148 13 5 1107 366 206 10 89 chr11 68524850 68524940 -53318916 - MT2B LTR ERVL -345 256 175 5 1107 1044 65 42 28 chr11 68524940 68525083 -53318773 + B1_Mus1 SINE Alu 2 146 -2 5 1107 298 267 80 0 chr11 68525151 68525226 -53318630 - PB1D10 SINE Alu 0 117 37 5 1107 708 12 0 0 chr11 68525257 68525338 -53318518 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 5 1107 261 0 0 0 chr11 68525558 68525587 -53318269 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1107 27 73 0 0 chr11 68525647 68525702 -53318154 + AT_rich Low_complexity Low_complexity 1 55 0 5 1107 343 275 92 72 chr11 68525743 68525896 -53317960 - RSINE1 SINE B4 0 165 10 6 1107 451 258 159 100 chr11 68525899 68526023 -53317833 - B4A SINE B4 -59 233 131 6 1107 351 113 0 0 chr11 68526023 68526076 -53317780 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1107 451 258 159 100 chr11 68526076 68526171 -53317685 - B4A SINE B4 -162 130 1 6 1107 198 192 0 0 chr11 68526235 68526287 -53317569 + C-rich Low_complexity Low_complexity 2 53 0 6 1107 596 250 133 0 chr11 68526337 68526525 -53317331 - B3 SINE B2 -3 213 1 6 1107 385 282 110 44 chr11 68526989 68527171 -53316685 + B3A SINE B2 5 198 0 6 1107 467 233 115 8 chr11 68527232 68527353 -53316503 + B4A SINE B4 100 234 -58 6 1107 805 234 18 49 chr11 68527353 68527566 -53316290 + B3A SINE B2 3 195 0 6 1107 491 181 0 31 chr11 68527579 68527676 -53316180 + B1F2 SINE Alu 56 149 0 6 1107 391 261 11 0 chr11 68527750 68527842 -53316014 - PB1D7 SINE Alu -4 116 24 6 1107 192 111 0 0 chr11 68527913 68527949 -53315907 + (CTG)n Simple_repeat Simple_repeat 1 36 0 7 1107 407 164 30 3 chr11 68527955 68528033 -53315823 + B1_Mus2 SINE Alu 42 120 0 7 1107 413 273 55 3 chr11 68528118 68528270 -53315586 + B3A SINE B2 27 186 -30 7 1107 237 59 0 0 chr11 68528390 68528424 -53315432 + MTC LTR MaLR 1 34 -385 7 1107 1307 146 81 32 chr11 68528439 68528686 -53315170 + MTC LTR MaLR 163 421 0 7 1107 447 19 0 0 chr11 68528778 68528830 -53315026 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1107 24 0 0 0 chr11 68528836 68528860 -53314996 + AT_rich Low_complexity Low_complexity 1 24 0 7 1107 748 217 0 7 chr11 68528941 68529085 -53314771 - B1_Mur2 SINE Alu -6 143 1 7 1107 183 42 0 0 chr11 68529087 68529111 -53314745 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1107 923 205 212 0 chr11 68529431 68529719 -53314137 - MTEa LTR MaLR -3 376 28 7 1107 485 244 16 2 chr11 68529741 68529861 -53313995 - B1F SINE Alu -15 134 9 7 1107 210 219 0 0 chr11 68530034 68530075 -53313781 + C-rich Low_complexity Low_complexity 2 42 0 8 1107 218 235 0 93 chr11 68531785 68531799 -53312057 + B4 SINE B4 77 83 -209 8 1107 714 122 6 183 chr11 68531799 68531979 -53311877 + B1_Mur3 SINE Alu 2 149 0 8 1107 1113 163 19 23 chr11 68532906 68533120 -53310736 - B3 SINE B2 -2 214 2 8 1107 1153 167 14 32 chr11 68533383 68533600 -53310256 - B3 SINE B2 -2 214 2 8 1107 341 244 222 15 chr11 68533685 68533951 -53309905 - Charlie1 DNA MER1_type -79 2702 2382 8 1107 750 247 58 11 chr11 68533964 68534152 -53309704 + B3 SINE B2 15 211 -5 8 1107 360 296 40 8 chr11 68534175 68534301 -53309555 - Charlie1 DNA MER1_type -415 2366 2237 8 1107 1199 34 0 14 chr11 68534311 68534459 -53309397 - B1_Mus2 SINE Alu 0 147 2 8 1107 268 198 128 32 chr11 68535079 68535173 -53308683 + MT2B LTR ERVL 153 255 -346 8 1107 460 202 64 0 chr11 68535112 68535206 -53308650 + B1_Mur2 SINE Alu 40 139 -10 8 1107 1245 27 7 0 chr11 68535324 68535470 -53308386 - B1_Mus2 SINE Alu 0 147 1 9 1107 348 231 108 123 chr11 68535646 68535858 -53307998 + ID_B1 SINE B4 1 209 -15 9 1107 232 243 27 67 chr11 68535859 68535934 -53307922 + tRNA-Ala-GCY_ tRNA tRNA 1 72 -3 9 1107 210 227 0 0 chr11 68536995 68537039 -53306817 - MIR SINE MIR -138 124 81 9 1107 207 282 25 37 chr11 68537151 68537232 -53306624 - MIR SINE MIR -138 124 45 9 1107 311 271 45 27 chr11 68537241 68537351 -53306505 - PB1D10 SINE Alu -3 114 3 9 1107 195 301 132 38 chr11 68537521 68537680 -53306176 - L3 LINE CR1 -765 3724 3551 9 1107 1011 189 95 20 chr11 68537704 68537904 -53305952 + B3 SINE B2 2 216 0 9 1107 273 154 0 37 chr11 68537994 68538048 -53305808 + MIRm SINE MIR 224 275 -1 9 1107 333 215 51 0 chr11 68538738 68538817 -53305039 - ID_B1 SINE B4 -14 210 128 9 1107 866 181 141 16 chr11 68540564 68540755 -53303101 + B3 SINE B2 2 216 0 1 1107 869 152 0 14 chr11 68541387 68541534 -53302322 - RLTR11B LTR ERVK 0 453 309 1 1107 954 158 84 40 chr11 68541535 68541785 -53302071 + RLTR15 LTR ERVK 98 358 -1 1 1107 888 70 0 0 chr11 68542261 68542389 -53301467 + B2_Mm2 SINE B2 1 128 -67 1 1107 1358 106 16 0 chr11 68542776 68542965 -53300891 + B2_Mm2 SINE B2 4 195 0 1 1107 1672 26 0 10 chr11 68542965 68543157 -53300699 + B2_Mm1a SINE B2 2 191 -2 1 1107 407 293 38 13 chr11 68543431 68543590 -53300266 - RSINE1 SINE B4 0 165 3 1 1107 229 222 69 20 chr11 68543678 68543779 -53300077 - L1MD LINE L1 -1888 4258 4153 1 1107 256 197 76 0 chr11 68543952 68544018 -53299838 - L1MC LINE L1 -2196 3950 3880 1 1107 207 0 0 0 chr11 68544278 68544301 -53299555 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1107 311 219 181 0 chr11 68544324 68544429 -53299427 - L1MD LINE L1 -2978 3168 3045 1 1107 315 121 0 0 chr11 68545024 68545082 -53298774 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1107 254 262 0 70 chr11 68545106 68545192 -53298664 - ID4_ SINE ID -1 82 3 1 1107 393 181 36 12 chr11 68545324 68545408 -53298448 + B1_Mus2 SINE Alu 49 134 -13 1 1107 297 0 0 0 chr11 68545408 68545441 -53298415 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 1 1107 257 337 36 0 chr11 68546045 68546128 -53297728 + PB1D7 SINE Alu 1 86 -34 1 1107 478 297 72 23 chr11 68546172 68546434 -53297422 + L1MA5 LINE L1 6002 6276 -24 1 1107 830 120 45 0 chr11 68546474 68546607 -53297249 + B1_Mus2 SINE Alu 1 139 -8 1 1107 358 263 0 116 chr11 68546627 68546645 -53297211 + MT2B LTR ERVL 151 153 -448 1 1107 759 200 21 0 chr11 68546645 68546785 -53297071 + B1_Mur2 SINE Alu 1 143 -6 1 1107 402 183 14 0 chr11 68547246 68547317 -53296539 + ID SINE ID 8 79 -145 1 1107 189 0 0 0 chr11 68548936 68548957 -53294899 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1107 1255 186 168 16 chr11 68549133 68549449 -53294407 + MTD LTR MaLR 48 411 -8 1 1107 1036 114 198 11 chr11 68549531 68549708 -53294148 - B3 SINE B2 -6 210 1 1 1107 239 286 59 31 chr11 68550027 68550228 -53293628 - L1ME2z LINE L1 -213 6231 6010 1 138 730 202 162 6 chr11 68550603 68550782 -53293074 + B3 SINE B2 9 215 -1 1 1108 703 145 321 0 chr11 68551233 68551392 -53292464 - B3 SINE B2 -6 210 1 1 1108 454 283 124 23 chr11 68551509 68551579 -53292277 + ID SINE ID 2 89 -135 1 1108 236 313 126 34 chr11 68551579 68551698 -53292158 + B1F SINE Alu 1 130 -19 1 1108 26 30 0 0 chr11 68552236 68552269 -53291587 + AT_rich Low_complexity Low_complexity 1 33 0 1 1108 431 88 160 5 chr11 68552495 68552603 -53291253 - B2_Mm2 SINE B2 -7 188 46 1 1108 1353 79 22 0 chr11 68552613 68552791 -53291065 - B2_Mm2 SINE B2 -12 183 2 1 1108 22 56 0 0 chr11 68552821 68552857 -53290999 + AT_rich Low_complexity Low_complexity 1 36 0 1 1108 686 223 5 82 chr11 68554096 68554291 -53289565 - B3 SINE B2 -33 183 4 1 1108 286 146 0 0 chr11 68555363 68555411 -53288445 + B3 SINE B2 4 51 -165 1 1108 1224 126 5 0 chr11 68555411 68555602 -53288254 - URR1A DNA MER1_type 0 226 35 1 1108 207 308 11 21 chr11 68555840 68555933 -53287923 + L2a LINE L2 3335 3426 0 1 1108 1872 165 172 80 chr11 68556746 68557234 -53286622 - MT2A LTR ERVL 0 533 1 1 1108 21 36 0 0 chr11 68557621 68557649 -53286207 + AT_rich Low_complexity Low_complexity 1 28 0 1 1108 617 161 72 5 chr11 68558144 68558264 -53285592 - B1_Mur4 SINE Alu -5 142 22 1 1108 231 245 58 83 chr11 68558290 68558410 -53285446 - YREP_Mm Unknown Unknown -1485 327 211 1 1108 589 197 79 50 chr11 68558310 68558449 -53285407 + B1F1 SINE Alu 7 149 0 1 1108 285 200 111 111 chr11 68560939 68561029 -53282827 - MER2B DNA MER2_type -1 335 246 1 1108 832 273 145 40 chr11 68561309 68561813 -53282043 - L1MB7 LINE L1 -18 6166 5610 1 1108 319 225 70 0 chr11 68563398 68563469 -53280387 - ID4_ SINE ID -4 79 4 1 1108 526 200 182 8 chr11 68563548 68563674 -53280182 + B1_Mur2 SINE Alu 2 149 0 1 1108 399 41 0 0 chr11 68563674 68563723 -53280133 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1 1108 189 171 0 0 chr11 68563723 68563758 -53280098 + GA-rich Low_complexity Low_complexity 2 36 0 1 1108 630 71 0 45 chr11 68564817 68564906 -53278950 - L1_Mus2 LINE L1 -234 6332 6248 1 1108 2027 65 4 4 chr11 68564922 68565184 -53278672 + L1_Mus2 LINE L1 6305 6566 0 1 1108 204 200 0 0 chr11 68565392 68565432 -53278424 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1108 243 0 0 0 chr11 68565609 68565636 -53278220 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1108 2595 127 27 5 chr11 68565816 68566227 -53277629 + MTC LTR MaLR 2 421 0 1 1108 6556 98 20 20 chr11 68566255 68567213 -53276643 - RMER17B LTR ERVK 0 958 1 1 1108 289 347 103 23 chr11 68568067 68568241 -53275615 - LTR82B Low_complexity ERVL 0 830 643 1 1108 745 296 146 39 chr11 68568248 68568789 -53275067 - LTR82A LTR ERVL -269 603 5 1 1108 347 246 132 14 chr11 68570147 68570291 -53273565 - L1M2 LINE L1 -537 5763 5603 1 1108 1034 230 86 59 chr11 68570633 68570971 -53272885 + Looper DNA PiggyBac 8 354 -1204 1 1108 224 255 39 0 chr11 68570972 68571023 -53272833 + ID SINE ID 6 58 -166 1 1108 954 211 14 76 chr11 68571066 68571276 -53272580 + B3A SINE B2 1 197 -1 1 1108 688 229 31 72 chr11 68571342 68571535 -53272321 - ORR1C2 LTR MaLR 0 384 200 1 1108 371 165 63 0 chr11 68571525 68571604 -53272252 - ORR1C2 LTR MaLR -290 84 1 1 1108 513 294 80 53 chr11 68572514 68572701 -53271155 - B3A SINE B2 -6 192 1 1 1108 2219 138 6 14 chr11 68572829 68573189 -53270667 + RLTR15 LTR ERVK 1 357 -2 1 1108 494 313 17 6 chr11 68573500 68573680 -53270176 + B3A SINE B2 1 182 -16 1 1108 348 24 0 0 chr11 68573762 68573803 -53270053 + (CCA)n Simple_repeat Simple_repeat 2 42 0 1 1108 316 0 45 0 chr11 68574035 68574079 -53269777 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1108 290 179 58 103 chr11 68574305 68574392 -53269464 + MT2B LTR ERVL 158 240 -361 1 1108 696 180 7 59 chr11 68574327 68574463 -53269393 + B1_Mur2 SINE Alu 21 149 0 1 1108 217 220 0 0 chr11 68574494 68574544 -53269312 + (AATAG)n Simple_repeat Simple_repeat 4 53 0 1 1108 374 260 104 19 chr11 68574716 68574822 -53269034 + ID_B1 SINE B4 79 193 -31 1 1108 592 184 10 10 chr11 68574731 68574835 -53269021 + B1_Mur1 SINE Alu 24 127 -22 1 1108 211 269 64 0 chr11 68576482 68576560 -53267296 - PB1D7 SINE Alu -10 110 28 1 1108 615 251 80 0 chr11 68576820 68576983 -53266873 + B4 SINE B4 2 177 -115 1 1108 631 212 97 15 chr11 68577199 68577333 -53266523 - B1_Mm SINE Alu 0 147 3 1 1108 338 287 35 69 chr11 68577241 68577357 -53266499 - MT2B LTR ERVL -343 258 147 1 1108 1062 64 43 0 chr11 68579858 68579998 -53263858 + B1_Mus1 SINE Alu 3 148 0 1 1108 257 157 78 0 chr11 68580017 68580068 -53263788 + B3A SINE B2 1 55 -143 1 1108 188 277 177 21 chr11 68580174 68580270 -53263586 - L2a LINE L2 -6 3420 3310 1 1108 263 236 202 28 chr11 68580279 68580388 -53263468 + LTR82B Low_complexity ERVL 78 205 -625 1 1108 432 265 152 33 chr11 68580311 68580522 -53263334 + LTR82A LTR ERVL 106 341 -531 1 1108 195 42 0 0 chr11 68581368 68581392 -53262464 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1108 410 255 19 38 chr11 68581414 68581520 -53262336 - RSINE1 SINE B4 -59 106 3 1 1108 770 141 8 23 chr11 68582334 68582465 -53261391 + MYSERV16_I-int LTR ERVK 1748 1876 -450 1 1108 276 292 0 0 chr11 68582565 68582637 -53261219 + B3A SINE B2 121 192 -6 1 1108 22 0 0 0 chr11 68583333 68583355 -53260501 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 1010 223 205 7 chr11 68583584 68583891 -53259965 - ORR1D2 LTR MaLR -2 368 1 1 1108 765 266 71 46 chr11 68584601 68584881 -53258975 + B4A SINE B4 1 287 -5 1 1108 829 183 14 0 chr11 68584905 68585047 -53258809 + B1_Mur4 SINE Alu 2 145 -5 1 1108 249 204 37 0 chr11 68585130 68585184 -53258672 + GA-rich Low_complexity Low_complexity 4 59 0 1 1108 289 300 12 0 chr11 68590051 68590131 -53253725 + PB1D9 SINE Alu 40 120 0 1 1108 226 167 42 0 chr11 68590717 68590765 -53253091 + ID_B1 SINE B4 173 222 -2 1 1108 252 71 0 51 chr11 68591883 68591942 -53251914 + (TTGG)n Simple_repeat Simple_repeat 1 56 0 1 1108 436 197 0 0 chr11 68591991 68592067 -53251789 - B1_Mur2 SINE Alu 0 149 74 1 1108 187 283 0 77 chr11 68593440 68593505 -53250351 - L2b LINE L2 -16 3359 3300 1 1108 860 161 7 14 chr11 68597261 68597406 -53246450 - B1_Mur4 SINE Alu -6 144 1 1 1108 22 0 0 0 chr11 68597425 68597447 -53246409 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 243 0 0 0 chr11 68597593 68597620 -53246236 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1108 582 165 26 17 chr11 68598520 68598637 -53245219 - PB1D9 SINE Alu 0 120 3 1 1108 690 174 17 0 chr11 68599937 68600052 -53243804 - PB1D7 SINE Alu -1 119 3 1 1108 443 221 4 31 chr11 68600251 68600369 -53243487 - B1_Mur1 SINE Alu -1 148 32 1 1108 395 234 225 8 chr11 68601615 68601744 -53242112 - RSINE1 SINE B4 -6 159 3 1 1108 1506 64 16 0 chr11 68602418 68602605 -53241251 - B2_Mm2 SINE B2 -5 190 1 1 1108 319 314 28 55 chr11 68602686 68602831 -53241025 + L1MC5 LINE L1 7695 7835 -126 2 1108 226 185 108 98 chr11 68603272 68603300 -53240556 - B4A SINE B4 -113 179 108 2 1108 231 161 234 31 chr11 68603300 68603364 -53240492 - PB1D10 SINE Alu -34 83 7 2 1108 213 39 0 0 chr11 68604755 68604781 -53239075 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 1108 531 320 64 0 chr11 68606002 68606158 -53237698 + ID_B1 SINE B4 1 166 -58 2 1108 242 221 12 105 chr11 68607096 68607182 -53236674 + ID4_ SINE ID 5 82 -1 2 1108 353 242 179 0 chr11 68607528 68607623 -53236233 + B3A SINE B2 27 138 -60 2 1108 249 33 0 0 chr11 68607628 68607658 -53236198 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1108 274 205 152 43 chr11 68608153 68608245 -53235611 - B3A SINE B2 -2 196 95 2 1108 512 232 35 28 chr11 68608240 68608382 -53235474 - B3A SINE B2 -55 143 1 2 1108 540 221 18 10 chr11 68608451 68608562 -53235294 + B1F SINE Alu 3 121 -6 2 1108 336 231 13 0 chr11 68609058 68609136 -53234720 + RLTR19C LTR ERVK 19 97 -409 2 1108 393 58 14 28 chr11 68609631 68609702 -53234154 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1108 204 40 0 0 chr11 68611132 68611157 -53232699 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1108 285 227 173 8 chr11 68611289 68611409 -53232447 - MIRc SINE MIR -113 155 10 2 1108 246 62 0 0 chr11 68612030 68612062 -53231794 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1108 718 279 178 10 chr11 68612607 68612911 -53230945 - MER68 LTR ERVL -191 372 18 2 1108 710 97 69 46 chr11 68613463 68613593 -53230263 - B1_Mur3 SINE Alu -8 141 9 2 1108 809 224 86 6 chr11 68613608 68613783 -53230073 - B3 SINE B2 -26 190 2 2 1108 863 239 17 6 chr11 68616690 68616871 -53226985 - B3 SINE B2 -33 183 1 2 1108 609 145 8 71 chr11 68617302 68617428 -53226428 - B1_Mur4 SINE Alu 0 150 33 2 1108 867 121 58 2 chr11 68618749 68618933 -53224923 + B2_Mm2 SINE B2 2 210 -6 2 1108 471 35 0 0 chr11 68618969 68619026 -53224830 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1108 22 0 0 0 chr11 68619085 68619107 -53224749 + AT_rich Low_complexity Low_complexity 1 22 0 2 1108 233 256 103 0 chr11 68619135 68619213 -53224643 - MLT1E1A LTR MaLR -3 677 592 2 1108 451 176 218 52 chr11 68621465 68621639 -53222217 + B3 SINE B2 4 206 -10 2 1108 639 237 120 10 chr11 68621834 68622026 -53221830 - B4A SINE B4 -45 247 35 2 1108 261 286 71 7 chr11 68623194 68623335 -53220521 - L1M5 LINE L1 -3144 3002 2853 2 1108 1117 162 47 0 chr11 68624026 68624217 -53219639 + ORR1A4 LTR MaLR 130 329 0 2 1108 785 302 87 17 chr11 68624217 68624517 -53219339 - Lx8 LINE L1 -849 6624 6304 2 1108 212 143 0 18 chr11 68624612 68624654 -53219202 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2 1108 1281 27 0 0 chr11 68624654 68624801 -53219055 - B1_Mus2 SINE Alu 0 147 1 2 1108 212 143 0 18 chr11 68624801 68624815 -53219041 + (TTTG)n Simple_repeat Simple_repeat 2 15 0 2 1108 1079 48 6 82 chr11 68627172 68627331 -53216525 - B1_Mus2 SINE Alu 0 147 1 2 1108 1398 58 0 22 chr11 68627339 68627356 -53216500 - B2_Mm1t SINE B2 -19 174 160 2 1108 186 43 0 0 chr11 68627356 68627379 -53216477 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1108 1398 58 0 22 chr11 68627379 68627539 -53216317 - B2_Mm1t SINE B2 -34 159 1 2 1108 921 139 95 0 chr11 68631201 68631359 -53212497 + B2_Mm2 SINE B2 15 187 -8 2 1108 370 324 72 26 chr11 68631817 68631969 -53211887 + Kanga1d DNA Tc2 175 333 -276 2 1108 233 167 17 100 chr11 68632035 68632046 -53211810 + B4A SINE B4 77 82 -210 2 1108 237 186 31 78 chr11 68632046 68632110 -53211746 + B1_Mur3 SINE Alu 2 62 -87 2 1108 503 227 0 0 chr11 68632188 68632285 -53211571 + B3 SINE B2 114 210 -6 2 1108 437 220 0 62 chr11 68634326 68634423 -53209433 - B1_Mm SINE Alu -12 135 45 2 1108 762 119 111 7 chr11 68636577 68636699 -53207157 + B1_Mur4 SINE Alu 1 137 -13 2 1108 180 0 0 0 chr11 68636699 68636719 -53207137 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1108 762 119 111 7 chr11 68636719 68636731 -53207125 + B1_Mur4 SINE Alu 138 148 -2 2 1108 312 302 79 8 chr11 68636809 68636936 -53206920 + L1MC3 LINE L1 6511 6646 -1139 2 1108 216 0 0 0 chr11 68637538 68637562 -53206294 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1108 949 37 6 156 chr11 68638649 68638809 -53205047 + B1_Mus1 SINE Alu 2 137 -11 2 1108 279 0 0 0 chr11 68638822 68638853 -53205003 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1108 314 247 82 0 chr11 68639346 68639443 -53204413 - PB1 SINE Alu -2 125 21 2 1108 1370 66 45 10 chr11 68641339 68641592 -53202264 - L1Md_T LINE L1 0 6582 6376 2 1108 438 150 203 62 chr11 68641594 68641722 -53202134 - B1_Mus2 SINE Alu 0 147 2 2 1108 469 209 135 30 chr11 68641750 68641883 -53201973 + B1F1 SINE Alu 1 147 -2 2 1108 1415 74 26 5 chr11 68642365 68642555 -53201301 + B2_Mm2 SINE B2 2 195 0 2 1108 585 184 0 0 chr11 68642555 68642669 -53201187 + GA-rich Low_complexity Low_complexity 2 115 0 2 1108 361 215 51 0 chr11 68642807 68642886 -53200970 - B1F1 SINE Alu 0 149 67 2 1108 257 333 0 51 chr11 68643289 68643368 -53200488 + ID4 SINE ID 2 76 -7 2 1108 315 0 0 0 chr11 68643368 68643403 -53200453 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1108 1188 48 7 0 chr11 68645013 68645158 -53198698 + B1_Mm SINE Alu 2 147 0 2 1108 270 81 0 0 chr11 68645158 68645195 -53198661 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1108 1196 102 51 6 chr11 68645301 68645478 -53198378 + B2_Mm2 SINE B2 2 186 -9 2 1108 457 237 103 7 chr11 68645528 68645664 -53198192 + B1_Mur1 SINE Alu 1 149 0 2 1108 441 178 45 119 chr11 68645689 68645823 -53198033 + B1F SINE Alu 26 149 0 2 1108 238 280 0 0 chr11 68645871 68645921 -53197935 + tRNA-Ala-GCY_ tRNA tRNA 2 51 -24 2 1108 349 234 0 15 chr11 68645943 68646008 -53197848 + RSINE1 SINE B4 18 81 -84 2 1108 474 265 89 52 chr11 68646031 68646222 -53197634 + B3A SINE B2 1 198 0 2 1108 750 175 93 6 chr11 68646294 68646466 -53197390 + B3A SINE B2 2 188 -10 2 1108 1690 221 111 73 chr11 68647249 68647875 -53195981 + Lx7 LINE L1 7062 7692 -4 2 1108 334 226 12 158 chr11 68647892 68647949 -53195907 + B1_Mur2 SINE Alu 33 85 -64 2 1108 330 45 0 0 chr11 68647949 68647993 -53195863 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1108 334 224 16 156 chr11 68647993 68648074 -53195782 + B1_Mur2 SINE Alu 85 149 0 2 1108 1167 92 91 11 chr11 68648133 68648298 -53195558 + B2_Mm2 SINE B2 1 180 -15 2 1108 315 0 0 0 chr11 68648298 68648333 -53195523 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1108 491 217 151 34 chr11 68648909 68649028 -53194828 + ID_B1 SINE B4 84 216 -8 2 1108 234 314 0 14 chr11 68649144 68649215 -53194641 + ID2 SINE ID 1 70 -13 2 1108 479 43 29 0 chr11 68649224 68649293 -53194563 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 2 1108 418 33 33 0 chr11 68649293 68649353 -53194503 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 2 1108 686 240 19 7 chr11 68650012 68650167 -53193689 + RSINE1 SINE B4 9 165 0 2 1108 216 285 71 60 chr11 68650167 68650193 -53193663 + B2_Mm1a SINE B2 8 190 -3 2 1108 629 221 75 27 chr11 68650270 68650436 -53193420 + B3A SINE B2 36 195 -3 2 1108 660 278 0 20 chr11 68650565 68650712 -53193144 - B1_Mur1 SINE Alu 0 149 6 2 1108 291 366 44 18 chr11 68650610 68650724 -53193132 - B4 SINE B4 -96 196 80 2 1108 244 319 39 101 chr11 68650724 68650737 -53193119 - MT2B LTR ERVL -339 260 142 2 1108 521 234 19 0 chr11 68650818 68650925 -53192931 + B1_Mur3 SINE Alu 41 149 0 2 1108 950 161 0 0 chr11 68650929 68651078 -53192778 + B1_Mur4 SINE Alu 2 150 0 2 1108 269 280 103 35 chr11 68651078 68651252 -53192604 + L1M3 LINE L1 5593 5778 -393 2 1108 1281 42 0 0 chr11 68651387 68651555 -53192301 + (CA)n Simple_repeat Simple_repeat 1 168 0 2 1108 652 46 0 0 chr11 68651578 68651665 -53192191 + L1Md_T LINE L1 6496 6582 0 2 1108 239 167 45 0 chr11 68651689 68651755 -53192101 + A-rich Low_complexity Low_complexity 5 73 0 2 1108 24 0 0 0 chr11 68651812 68651836 -53192020 + AT_rich Low_complexity Low_complexity 1 24 0 2 1108 882 185 84 5 chr11 68652030 68652220 -53191636 + B3 SINE B2 1 205 -11 2 1108 203 167 0 0 chr11 68652230 68652272 -53191584 + A-rich Low_complexity Low_complexity 2 43 0 2 1108 1058 105 84 39 chr11 68652513 68652691 -53191165 + B2_Mm2 SINE B2 4 189 -6 2 1108 282 56 0 0 chr11 68652943 68652979 -53190877 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1108 267 279 68 51 chr11 68653040 68653194 -53190662 + MIRb SINE MIR 79 248 -20 2 1108 231 275 58 0 chr11 68653226 68653295 -53190561 + ID4 SINE ID 2 74 -9 2 1108 912 173 50 0 chr11 68653755 68653934 -53189922 - B2_Mm2 SINE B2 -6 189 2 2 1108 1179 37 0 0 chr11 68653960 68654096 -53189760 - B1_Mus1 SINE Alu -11 137 2 2 1108 1629 52 0 0 chr11 68654119 68654311 -53189545 - B2_Mm1t SINE B2 0 193 2 2 1108 416 60 15 0 chr11 68654313 68654380 -53189476 - B2_Mm1t SINE B2 -1 192 125 2 1108 1226 81 10 93 chr11 68654391 68654596 -53189260 - B2_Mm1t SINE B2 -5 188 1 2 1108 1348 64 46 0 chr11 68654918 68655091 -53188765 + B2_Mm2 SINE B2 2 182 -13 2 1108 431 49 0 13 chr11 68655137 68655235 -53188621 + B2_Mm2 SINE B2 47 179 -16 3 1108 702 35 0 0 chr11 68655235 68655320 -53188536 + (GGAGA)n Simple_repeat Simple_repeat 2 86 0 3 1108 299 188 0 0 chr11 68655321 68655369 -53188487 + B1_Mus2 SINE Alu 35 82 -65 3 1108 1452 215 226 40 chr11 68655736 68656215 -53187641 + Lx8 LINE L1 6574 7141 -332 3 1108 1092 74 61 0 chr11 68656810 68656958 -53186898 + B2_Mm2 SINE B2 5 161 -34 3 1108 216 170 20 41 chr11 68656977 68657026 -53186830 + (CATA)n Simple_repeat Simple_repeat 4 51 0 3 1108 594 312 19 0 chr11 68657108 68657262 -53186594 - RSINE1 SINE B4 -6 159 3 3 1108 569 223 102 118 chr11 68657796 68657940 -53185916 + Charlie4a DNA MER1_type 168 285 -223 3 1108 1163 65 0 0 chr11 68657940 68658079 -53185777 - B1_Mus1 SINE Alu -9 139 1 3 1108 569 223 102 118 chr11 68658079 68658239 -53185617 + Charlie4a DNA MER1_type 286 467 -41 3 1108 621 144 99 0 chr11 68658248 68658359 -53185497 + B3 SINE B2 95 216 0 3 1108 459 228 303 46 chr11 68659295 68659470 -53184386 + ID_B1 SINE B4 1 220 -4 3 1108 209 250 0 0 chr11 68659473 68659517 -53184339 + GA-rich Low_complexity Low_complexity 1 44 0 3 1108 201 350 68 75 chr11 68659965 68660098 -53183758 + MIR3 SINE MIR 31 162 -46 3 1108 1026 182 46 20 chr11 68660517 68660713 -53183143 + B3 SINE B2 16 216 0 3 1108 313 257 14 0 chr11 68660722 68660792 -53183064 + ID4 SINE ID 2 72 -11 3 1108 453 50 0 0 chr11 68661360 68661420 -53182436 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1108 833 200 74 70 chr11 68661532 68661747 -53182109 - B3 SINE B2 0 216 1 3 1108 312 27 0 0 chr11 68661850 68661887 -53181969 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1108 180 0 0 0 chr11 68661899 68661919 -53181937 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 3 1108 207 0 0 0 chr11 68661924 68661947 -53181909 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1108 1092 37 0 49 chr11 68661957 68662099 -53181757 - B1_Mm SINE Alu -12 135 1 3 1108 305 281 0 30 chr11 68662151 68662250 -53181606 - CR1_Mam LINE CR1 -84 2120 2025 3 1108 310 256 84 31 chr11 68662792 68662989 -53180867 - L1MA6 LINE L1 -5 6295 6081 3 1108 308 218 17 129 chr11 68663160 68663256 -53180600 + B1F2 SINE Alu 47 135 -14 3 1108 237 65 0 0 chr11 68663256 68663287 -53180569 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1108 308 218 17 129 chr11 68663287 68663306 -53180550 + B1F2 SINE Alu 136 149 0 3 1108 944 213 60 28 chr11 68663355 68663572 -53180284 + ID_B1 SINE B4 1 224 0 3 1108 570 240 104 66 chr11 68663598 68663680 -53180176 + B3A SINE B2 9 98 -100 3 1108 270 0 0 0 chr11 68663680 68663710 -53180146 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 3 1108 570 240 104 66 chr11 68663710 68663810 -53180046 + B3A SINE B2 99 197 -1 3 1108 435 229 248 0 chr11 68663850 68664003 -53179853 + B3A SINE B2 1 191 -7 3 1108 496 271 144 6 chr11 68664050 68664235 -53179621 + MIR SINE MIR 45 261 -7 3 1108 2298 113 98 43 chr11 68668402 68668801 -53175055 - MTC LTR MaLR 0 421 1 3 1108 1659 190 40 50 chr11 68669661 68670038 -53173818 + ORR1D1 LTR MaLR 1 373 -1 3 1108 565 267 53 7 chr11 68670240 68670391 -53173465 + RSINE1 SINE B4 2 159 -6 3 1108 203 184 0 0 chr11 68670391 68670429 -53173427 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1108 874 234 31 21 chr11 68670436 68670628 -53173228 + B3A SINE B2 2 195 -3 3 1108 627 202 0 40 chr11 68670629 68670753 -53173103 + PB1D9 SINE Alu 2 120 0 3 1108 188 269 88 80 chr11 68670815 68670928 -53172928 + L2c LINE L2 3273 3386 -1 3 1108 652 195 22 52 chr11 68671191 68671326 -53172530 + B1_Mur1 SINE Alu 19 149 0 3 1108 753 261 65 42 chr11 68671369 68671585 -53172271 + ID_B1 SINE B4 4 224 0 3 1108 288 271 96 70 chr11 68671692 68671807 -53172049 - L2a LINE L2 -44 3382 3265 3 1108 362 240 0 65 chr11 68671859 68671966 -53171890 + PB1D10 SINE Alu 18 117 0 3 1108 318 148 0 0 chr11 68671968 68672022 -53171834 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1108 247 304 14 0 chr11 68672166 68672235 -53171621 + L2c LINE L2 3318 3387 0 3 1108 353 241 139 61 chr11 68672336 68672451 -53171405 + PB1 SINE Alu 1 124 -3 3 1108 1026 219 5 54 chr11 68672742 68672964 -53170892 + B3 SINE B2 6 216 0 3 1108 335 233 0 0 chr11 68673004 68673064 -53170792 - PB1 SINE Alu -59 68 9 3 1108 210 344 0 16 chr11 68673009 68673071 -53170785 - ID_B1 SINE B4 -81 143 83 3 1108 282 238 179 9 chr11 68673879 68673985 -53169871 - L2a LINE L2 0 3426 3303 3 1108 243 0 0 0 chr11 68674020 68674047 -53169809 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 3 1108 748 210 58 0 chr11 68674055 68674193 -53169663 - B1_Mur4 SINE Alu 0 150 5 3 1108 860 200 192 11 chr11 68674319 68674501 -53169355 - B3 SINE B2 0 216 2 3 1108 203 109 42 42 chr11 68674518 68674566 -53169290 + GA-rich Low_complexity Low_complexity 2 49 0 3 1108 918 234 15 10 chr11 68674896 68675099 -53168757 + B3 SINE B2 2 205 -11 3 1108 1370 68 40 0 chr11 68675133 68675309 -53168547 + B2_Mm2 SINE B2 1 183 -12 3 1108 285 29 0 0 chr11 68675309 68675343 -53168513 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 3 1108 189 0 0 0 chr11 68675343 68675364 -53168492 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1108 200 214 36 0 chr11 68675616 68675672 -53168184 + CT-rich Low_complexity Low_complexity 4 61 0 3 1108 346 171 81 30 chr11 68675834 68675925 -53167931 + PB1 SINE Alu 1 127 0 3 1108 2025 152 24 36 chr11 68675974 68676389 -53167467 + RMER17C LTR ERVK 1 410 0 3 1108 537 152 27 100 chr11 68676592 68676702 -53167154 - PB1D9 SINE Alu 0 120 19 3 1108 289 323 41 8 chr11 68677219 68677341 -53166515 + MIR3 SINE MIR 65 192 -84 3 1108 946 291 183 14 chr11 68677532 68677964 -53165892 - MLT1D LTR MaLR 0 505 1 3 1108 250 272 176 50 chr11 68677986 68678168 -53165688 - MER113A DNA MER1_type -58 256 52 3 1108 288 312 112 14 chr11 68678741 68678884 -53164972 - MIRb SINE MIR 0 268 112 3 1108 693 114 0 0 chr11 68679074 68679179 -53164677 + (TCTCC)n Simple_repeat Simple_repeat 5 109 0 3 1108 185 65 0 31 chr11 68679192 68679224 -53164632 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 3 1108 750 187 65 0 chr11 68679236 68679375 -53164481 - B1_Mur1 SINE Alu -1 148 1 3 1108 289 262 0 127 chr11 68679272 68679390 -53164466 - MT2B LTR ERVL -344 257 155 3 1108 932 249 34 0 chr11 68679630 68679839 -53164017 - B3 SINE B2 0 216 1 3 1108 288 270 72 87 chr11 68679985 68680180 -53163676 + B3A SINE B2 1 192 -6 3 1108 713 235 51 41 chr11 68680184 68680379 -53163477 + B3A SINE B2 2 198 0 3 1108 409 47 93 19 chr11 68680551 68680659 -53163197 + (GTTTG)n Simple_repeat Simple_repeat 5 120 0 3 1108 1208 75 0 0 chr11 68680659 68680806 -53163050 - B1_Mus1 SINE Alu -1 147 1 3 1108 345 148 0 0 chr11 68680884 68680938 -53162918 - HAL1-3A_ME LINE L1 -830 2028 1975 3 1108 518 146 6 0 chr11 68680938 68681117 -53162739 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1108 806 132 74 0 chr11 68681328 68681449 -53162407 + B1_Mus1 SINE Alu 5 134 -14 3 1108 375 180 184 6 chr11 68681501 68681596 -53162260 + B1_Mur1 SINE Alu 31 131 -18 3 1108 461 141 12 0 chr11 68681613 68681698 -53162158 + GA-rich Low_complexity Low_complexity 4 89 0 3 1109 1317 74 28 17 chr11 68681877 68682055 -53161801 + B2_Mm2 SINE B2 2 181 -14 3 1109 249 329 66 0 chr11 68682121 68682197 -53161659 + ID4_ SINE ID 2 82 -1 3 1109 506 270 22 0 chr11 68682202 68682339 -53161517 + B1F SINE Alu 3 142 -7 3 1109 656 265 7 7 chr11 68682414 68682562 -53161294 + B1_Mur2 SINE Alu 2 149 0 3 1109 240 35 0 0 chr11 68682587 68682616 -53161240 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 3 1109 727 217 0 28 chr11 68682865 68682998 -53160858 + B1_Mur2 SINE Alu 9 137 -12 3 1109 513 0 0 0 chr11 68682998 68683055 -53160801 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 3 1109 1151 37 29 0 chr11 68683111 68683247 -53160609 + B1_Mus2 SINE Alu 2 141 -6 3 1109 180 0 0 0 chr11 68683248 68683268 -53160588 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1109 331 341 101 61 chr11 68683746 68684063 -53159793 + L1ME4a LINE L1 5625 5957 -167 3 1109 352 189 144 21 chr11 68684063 68684160 -53159696 + PB1D10 SINE Alu 1 109 -8 3 1109 541 272 7 22 chr11 68684197 68684336 -53159520 + B1F2 SINE Alu 4 140 -9 3 1109 842 191 113 5 chr11 68684359 68684554 -53159302 + B3 SINE B2 1 216 0 3 1109 274 292 0 11 chr11 68685730 68685820 -53158036 + BC1_Mm scRNA scRNA 1 89 -63 3 1109 194 0 39 0 chr11 68685822 68685848 -53158008 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1109 691 173 23 8 chr11 68687058 68687178 -53156678 + B1_Mus1 SINE Alu 12 132 -16 3 1109 513 0 0 0 chr11 68687178 68687235 -53156621 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1109 390 273 92 18 chr11 68687508 68687672 -53156184 - MIRb SINE MIR -16 252 77 3 1109 566 228 25 0 chr11 68687713 68687845 -53156011 + B3 SINE B2 2 140 -53 3 1109 365 0 0 22 chr11 68687849 68687895 -53155961 + (CAA)n Simple_repeat Simple_repeat 1 45 0 3 1109 631 155 126 44 chr11 68687906 68688041 -53155815 + B1_Mur4 SINE Alu 4 149 -1 3 1109 189 0 0 0 chr11 68688175 68688196 -53155660 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1109 343 308 19 0 chr11 68688196 68688303 -53155553 + MER5A1 DNA MER1_type 50 158 -8 4 1109 805 204 0 0 chr11 68689020 68689162 -53154694 + B1F2 SINE Alu 1 142 -7 4 1109 1218 54 0 0 chr11 68689172 68689319 -53154537 + B1_Mus1 SINE Alu 2 148 0 4 1109 201 154 0 0 chr11 68689319 68689358 -53154498 + A-rich Low_complexity Low_complexity 1 39 0 4 1109 1049 116 14 0 chr11 68689470 68689616 -53154240 - B1_Mus1 SINE Alu 0 148 1 4 1109 665 188 230 23 chr11 68689642 68689816 -53154040 + B3 SINE B2 1 210 -6 4 1109 862 150 14 35 chr11 68689834 68689979 -53153877 + B1_Mur2 SINE Alu 2 143 -6 4 1109 637 190 0 27 chr11 68689979 68690125 -53153731 + Lx4B LINE L1 6913 7054 -4 4 1109 561 238 62 7 chr11 68690490 68690634 -53153222 + ID_B1 SINE B4 73 224 0 4 1109 1232 91 0 0 chr11 68690653 68690818 -53153038 - B2_Mm2 SINE B2 -27 168 4 4 1109 1378 83 15 25 chr11 68690957 68691154 -53152702 + B2_Mm2 SINE B2 1 195 0 4 1109 485 270 101 7 chr11 68691189 68691338 -53152518 - RSINE1 SINE B4 0 165 3 4 1109 255 73 0 0 chr11 68691444 68691485 -53152371 - B3 SINE B2 -175 41 1 4 1109 370 204 38 11 chr11 68691691 68691802 -53152054 - L1MEg LINE L1 -5113 1389 1240 4 1109 886 161 0 7 chr11 68691894 68692032 -53151824 - B2_Mm2 SINE B2 -58 137 1 4 1109 997 133 7 0 chr11 68692061 68692204 -53151652 - B1_Mur4 SINE Alu -1 149 6 4 1109 356 271 28 16 chr11 68692272 68692413 -53151443 - PB1D10 SINE Alu -6 143 1 4 1109 250 107 0 35 chr11 68692662 68692720 -53151136 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 4 1109 591 126 42 10 chr11 68692720 68692816 -53151040 - B1F2 SINE Alu -1 148 50 4 1109 365 229 14 75 chr11 68692816 68692845 -53151011 - ID_B1 SINE B4 0 224 112 4 1109 808 168 0 92 chr11 68692859 68693023 -53150833 - B1_Mur3 SINE Alu 0 149 1 4 1109 1553 43 16 5 chr11 68693034 68693221 -53150635 - B2_Mm2 SINE B2 -5 190 2 4 1109 25 0 0 0 chr11 68693228 68693253 -53150603 + AT_rich Low_complexity Low_complexity 1 25 0 4 1109 462 217 183 0 chr11 68693261 68693376 -53150480 - RSINE1 SINE B4 -26 139 4 4 1109 396 64 24 49 chr11 68693697 68693779 -53150077 + (TTGG)n Simple_repeat Simple_repeat 4 83 0 4 1109 827 128 105 0 chr11 68693780 68693913 -53149943 - B1_Mus1 SINE Alu 0 148 2 4 1109 203 381 44 22 chr11 68693924 68694061 -53149795 - L2 LINE L2 -609 2810 2671 4 1109 377 240 35 44 chr11 68694275 68694403 -53149453 + B3A SINE B2 1 152 -41 4 1109 566 28 0 14 chr11 68694403 68694476 -53149380 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1109 213 278 183 41 chr11 68694476 68694516 -53149340 + B2_Mm1t SINE B2 153 192 -1 4 1109 591 221 64 7 chr11 68694593 68694734 -53149122 - B1_Mur3 SINE Alu 0 149 1 4 1109 524 229 114 8 chr11 68694760 68694892 -53148964 + RSINE1 SINE B4 3 148 -17 4 1109 282 29 0 0 chr11 68694897 68694932 -53148924 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1109 436 176 323 78 chr11 68694951 68695118 -53148738 + B3 SINE B2 1 208 -8 4 1109 394 18 18 18 chr11 68696111 68696167 -53147689 + (TTTTG)n Simple_repeat Simple_repeat 3 58 0 4 1109 453 188 120 8 chr11 68696169 68696302 -53147554 - PB1D10 SINE Alu -7 141 1 4 1109 532 142 35 11 chr11 68696664 68696772 -53147084 - B1_Mm SINE Alu -1 146 10 4 1109 520 304 77 6 chr11 68696962 68697131 -53146725 - ID_B1 SINE B4 -43 181 1 4 1109 528 270 63 3 chr11 68697137 68697335 -53146521 - L1M3 LINE L1 -515 5656 5448 4 1109 195 100 0 0 chr11 68697642 68697672 -53146184 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1109 577 53 0 0 chr11 68697672 68697747 -53146109 - B1_Mus2 SINE Alu 0 147 73 4 1109 259 169 0 198 chr11 68697677 68697758 -53146098 - B4 SINE B4 -71 221 157 4 1109 344 238 95 0 chr11 68697938 68698043 -53145813 - PB1D10 SINE Alu -2 115 1 4 1109 341 342 8 16 chr11 68698419 68698541 -53145315 - MIRb SINE MIR -61 207 87 4 1109 260 308 0 37 chr11 68698858 68698939 -53144917 - ID4_ SINE ID -1 82 5 4 1109 316 222 0 65 chr11 68698942 68699019 -53144837 - PB1D10 SINE Alu 0 117 46 4 1109 356 21 42 0 chr11 68699020 68699068 -53144788 + (TATG)n Simple_repeat Simple_repeat 3 52 0 4 1109 243 235 108 24 chr11 68699071 68699154 -53144702 - MER53 DNA hAT -63 130 41 4 1109 433 83 170 38 chr11 68699161 68699271 -53144585 - B2_Mm2 SINE B2 -7 186 49 4 1109 1317 80 11 11 chr11 68699285 68699463 -53144393 - B2_Mm1t SINE B2 -14 179 2 4 1109 216 0 0 0 chr11 68699475 68699499 -53144357 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1109 1172 65 0 0 chr11 68699523 68699662 -53144194 - B1_Mus1 SINE Alu -6 142 4 4 1109 226 314 237 0 chr11 68700057 68700175 -53143681 + RSINE1 SINE B4 5 150 -15 4 1109 26 0 0 0 chr11 68700212 68700238 -53143618 + AT_rich Low_complexity Low_complexity 1 26 0 4 1109 360 246 56 95 chr11 68700246 68700372 -53143484 + RSINE1 SINE B4 7 127 -38 4 1109 235 49 0 47 chr11 68700646 68700689 -53143167 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1109 1064 232 16 0 chr11 68700727 68700921 -53142935 - B3 SINE B2 -5 211 15 4 1109 216 67 0 0 chr11 68700953 68700983 -53142873 + (CAA)n Simple_repeat Simple_repeat 2 31 0 4 1109 879 217 56 115 chr11 68700983 68701064 -53142792 - ID_B1 SINE B4 -4 220 157 4 1109 940 112 8 0 chr11 68701064 68701198 -53142658 - B1_Mus1 SINE Alu -13 135 1 4 1109 879 217 56 115 chr11 68701198 68701350 -53142506 - ID_B1 SINE B4 -68 156 1 4 1109 482 254 12 84 chr11 68701356 68701643 -53142213 - L1MA6 LINE L1 -2 6289 6037 4 1109 342 0 0 0 chr11 68702176 68702214 -53141642 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1109 555 287 93 44 chr11 68702709 68702935 -53140921 + MIRb SINE MIR 32 268 0 4 1109 212 59 29 0 chr11 68703503 68703537 -53140319 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1109 678 228 7 7 chr11 68703757 68703894 -53139962 + ID_B1 SINE B4 83 219 -5 4 1109 374 239 0 111 chr11 68704465 68704564 -53139292 - B1_Mur1 SINE Alu -1 148 61 4 1109 332 326 22 43 chr11 68705212 68705350 -53138506 + MARNA DNA Mariner 246 380 -206 4 1109 240 306 18 26 chr11 68705926 68706040 -53137816 + GA-rich Low_complexity Low_complexity 2 114 0 4 1109 968 143 20 0 chr11 68708778 68708925 -53134931 - B1_Mur4 SINE Alu 0 150 1 4 1109 256 368 13 13 chr11 68708987 68709141 -53134715 + L1MC LINE L1 5613 5766 -2116 4 1109 1022 79 1 1 chr11 68709399 68709546 -53134310 - B2_Mm2 SINE B2 -19 174 28 4 1109 232 78 19 38 chr11 68709548 68709601 -53134255 + (TTTTTG)n Simple_repeat Simple_repeat 1 52 0 4 1109 315 19 0 55 chr11 68709608 68709663 -53134193 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 4 1109 1156 44 7 0 chr11 68709663 68709799 -53134057 - B1_Mus2 SINE Alu -9 138 2 4 1109 241 111 56 0 chr11 68709802 68709838 -53134018 - B2_Mm2 SINE B2 -156 39 2 4 1109 620 146 10 10 chr11 68710102 68710206 -53133650 - MTC LTR MaLR 0 407 304 4 1109 1966 22 4 0 chr11 68710207 68710437 -53133419 + MTA_Mm LTR MaLR 1 231 -165 4 1109 1797 106 127 28 chr11 68710450 68710741 -53133115 - MTC LTR MaLR -101 320 1 4 1109 944 178 22 27 chr11 68710741 68710920 -53132936 + B3 SINE B2 36 213 -3 4 1109 1052 227 10 19 chr11 68710928 68711135 -53132721 + B3 SINE B2 1 205 -11 4 1109 341 299 10 0 chr11 68711528 68711625 -53132231 + PB1D10 SINE Alu 3 100 -17 4 1109 189 0 0 0 chr11 68711653 68711674 -53132182 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 4 1109 862 133 52 0 chr11 68712217 68712352 -53131504 + B1_Mur4 SINE Alu 9 150 0 4 1109 238 338 121 28 chr11 68712810 68713070 -53130786 + L2c LINE L2 3072 3382 -5 4 1109 213 119 47 23 chr11 68713091 68713134 -53130722 + T-rich Low_complexity Low_complexity 4 47 0 4 1109 937 143 0 52 chr11 68713136 68713291 -53130565 - B1_Mus2 SINE Alu 0 147 1 4 1109 226 152 0 0 chr11 68713453 68713486 -53130370 - B1_Mus2 SINE Alu -6 141 109 4 1109 262 264 155 40 chr11 68713511 68713685 -53130171 + MIR SINE MIR 28 221 -41 4 1109 1078 103 11 6 chr11 68713919 68714095 -53129761 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 4 1109 1126 50 14 0 chr11 68714107 68714247 -53129609 - B1_Mus1 SINE Alu -6 142 1 4 1109 1472 147 95 10 chr11 68714254 68714549 -53129307 - Lx LINE L1 0 6654 6335 4 1109 197 33 0 32 chr11 68715737 68715768 -53128088 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1109 285 276 13 38 chr11 68716478 68716557 -53127299 + ID SINE ID 3 79 -145 4 1109 337 188 0 59 chr11 68717356 68717424 -53126432 - B1_Mus2 SINE Alu -79 68 5 4 1109 800 152 0 36 chr11 68717433 68717570 -53126286 - B2_Mm2 SINE B2 -25 170 39 4 1109 350 250 121 108 chr11 68718363 68718520 -53125336 - B3 SINE B2 -25 191 19 4 1109 245 281 143 20 chr11 68718647 68718745 -53125111 + PB1D10 SINE Alu 4 113 -4 4 1109 349 162 58 14 chr11 68719002 68719071 -53124785 - PB1D7 SINE Alu 0 120 49 4 1109 198 0 0 0 chr11 68719083 68719105 -53124751 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1109 338 214 56 28 chr11 68719120 68719192 -53124664 + MT2B LTR ERVL 184 257 -344 4 1109 646 72 113 0 chr11 68719129 68719226 -53124630 + B1_Mus2 SINE Alu 40 147 0 4 1109 232 344 54 32 chr11 68719545 68719638 -53124218 + B4A SINE B4 3 97 -195 4 1109 397 303 9 0 chr11 68719829 68719938 -53123918 + B3A SINE B2 1 110 -88 4 1109 857 112 44 22 chr11 68720316 68720453 -53123403 + B1_Mus2 SINE Alu 1 140 -7 5 1109 387 276 66 9 chr11 68720749 68720855 -53123001 - B3 SINE B2 -11 205 94 5 1109 489 224 0 27 chr11 68721517 68721627 -53122229 + U6 snRNA snRNA 1 107 0 5 1109 1150 69 14 0 chr11 68721648 68721793 -53122063 - B1_Mus2 SINE Alu 0 147 1 5 1109 616 175 131 14 chr11 68721812 68721957 -53121899 - B3 SINE B2 -9 207 46 5 1109 326 278 21 43 chr11 68722753 68722847 -53121009 + RSINE1 SINE B4 3 94 -71 5 1109 991 103 7 40 chr11 68722847 68722999 -53120857 + B1_Mus1 SINE Alu 2 148 0 5 1109 291 114 0 0 chr11 68723014 68723058 -53120798 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1109 311 179 53 18 chr11 68723058 68723115 -53120741 + RSINE1 SINE B4 82 140 -25 5 1109 222 118 0 0 chr11 68723341 68723375 -53120481 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 5 1109 650 164 87 0 chr11 68723375 68723479 -53120377 - B1_Mur3 SINE Alu -10 139 27 5 1109 1123 81 0 26 chr11 68723489 68723641 -53120215 - B1_Mus1 SINE Alu 0 148 1 5 1109 676 205 0 33 chr11 68723707 68723889 -53119967 + CT-rich Low_complexity Low_complexity 1 176 0 5 1109 639 0 0 0 chr11 68723889 68723960 -53119896 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 5 1109 458 175 88 0 chr11 68723964 68724044 -53119812 - PB1D9 SINE Alu -7 113 27 5 1109 1285 34 0 0 chr11 68724069 68724215 -53119641 - B1_Mus2 SINE Alu 0 147 2 5 1109 590 185 0 18 chr11 68724279 68724389 -53119467 - PB1D9 SINE Alu -10 110 3 5 1109 1325 70 38 5 chr11 68724392 68724420 -53119436 - B2_Mm1t SINE B2 0 193 160 5 1109 195 69 0 0 chr11 68724420 68724449 -53119407 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 5 1109 1325 70 38 5 chr11 68724449 68724606 -53119250 - B2_Mm1t SINE B2 -34 159 2 5 1109 703 315 14 18 chr11 68724771 68724988 -53118868 + B3 SINE B2 1 216 0 5 1109 719 259 127 17 chr11 68725933 68726009 -53117847 + ID_B1 SINE B4 8 199 -25 5 1109 279 310 30 30 chr11 68726009 68726106 -53117750 - YREP_Mm Unknown Unknown -1515 297 202 5 1109 495 0 0 0 chr11 68726106 68726161 -53117695 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 5 1109 279 310 30 30 chr11 68726161 68726196 -53117660 - YREP_Mm Unknown Unknown -1611 201 166 5 1109 742 234 28 28 chr11 68726516 68726692 -53117164 - B3A SINE B2 -16 182 7 5 1109 2974 66 218 2 chr11 68726702 68727129 -53116727 + MURVY-LTR LTR ERV1 1 519 0 5 1109 279 173 0 0 chr11 68727141 68727193 -53116663 + CT-rich Low_complexity Low_complexity 1 52 0 5 1109 846 169 0 7 chr11 68727201 68727344 -53116512 - B1_Mus2 SINE Alu -5 142 1 5 1109 437 268 68 80 chr11 68727344 68727356 -53116500 - B4 SINE B4 -63 180 70 5 1109 339 297 118 14 chr11 68727602 68727814 -53116042 + L1MC4 LINE L1 7331 7564 -478 5 1109 1173 76 7 0 chr11 68727828 68727973 -53115883 + B1_Mus1 SINE Alu 3 148 0 5 1109 225 157 39 0 chr11 68727979 68728030 -53115826 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 5 1109 428 290 87 84 chr11 68728039 68728465 -53115391 + L1MC4 LINE L1 7573 7999 -43 5 1109 402 21 0 0 chr11 68728465 68728512 -53115344 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 5 1109 1209 41 0 26 chr11 68728513 68728664 -53115192 - B1_Mm SINE Alu 0 147 1 5 1109 639 93 0 0 chr11 68728727 68728813 -53115043 - B1_Mus1 SINE Alu -62 86 1 5 1109 384 256 67 34 chr11 68728816 68728994 -53114862 - L1MC LINE L1 -727 5606 5423 5 1109 570 218 27 9 chr11 68729019 68729130 -53114726 - RSINE1 SINE B4 -30 135 23 5 1109 281 258 109 40 chr11 68729392 68729493 -53114363 - MLT1I LTR MaLR -286 125 18 5 1109 612 214 2 0 chr11 68729583 68729709 -53114147 + B1_Mur1 SINE Alu 1 128 -21 5 1109 476 254 17 0 chr11 68729845 68729963 -53113893 + L1M4 LINE L1 5689 5808 -366 5 1109 350 192 72 60 chr11 68729968 68730051 -53113805 - B1_Mur2 SINE Alu 0 149 66 5 1109 711 210 9 30 chr11 68730153 68730319 -53113537 - B3 SINE B2 -36 162 1 5 1109 257 350 56 0 chr11 68730379 68730539 -53113317 + L1MB1 LINE L1 5857 6025 -143 5 1109 276 261 158 32 chr11 68730697 68730792 -53113064 - PB1D10 SINE Alu 0 117 11 5 1109 201 74 0 0 chr11 68730795 68730822 -53113034 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1109 1302 21 0 0 chr11 68730825 68730970 -53112886 - B1_Mm SINE Alu -1 146 2 5 1109 270 136 0 0 chr11 68730996 68731040 -53112816 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1109 1230 86 69 0 chr11 68731063 68731237 -53112619 - B2_Mm1t SINE B2 -6 187 2 5 1109 843 162 15 7 chr11 68731239 68731376 -53112480 - B1_Mur4 SINE Alu -12 138 1 5 1109 348 220 73 41 chr11 68731731 68731745 -53112111 + MT2B LTR ERVL 152 169 -432 5 1109 659 181 94 0 chr11 68731745 68731872 -53111984 + B1_Mus1 SINE Alu 1 139 -9 5 1109 190 0 67 0 chr11 68731873 68731903 -53111953 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5 1109 332 237 26 0 chr11 68732001 68732077 -53111779 - BC1_Mm scRNA scRNA -73 79 2 5 1109 203 0 0 36 chr11 68732095 68732123 -53111733 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1109 358 305 175 84 chr11 68732124 68732331 -53111525 + MLT1F LTR MaLR 140 375 -173 5 1109 324 0 0 0 chr11 68732331 68732367 -53111489 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 1109 578 194 121 0 chr11 68732367 68732491 -53111365 - B1_Mur1 SINE Alu -10 139 1 5 1109 358 305 175 84 chr11 68732491 68732568 -53111288 + MLT1F LTR MaLR 376 450 -98 5 1109 264 304 47 23 chr11 68732585 68732713 -53111143 + L1MA8 LINE L1 5653 5783 -508 5 1109 867 235 15 56 chr11 68732740 68732938 -53110918 - B3 SINE B2 0 216 27 5 1109 1229 41 0 7 chr11 68732957 68733103 -53110753 - B1_Mus2 SINE Alu -1 146 2 5 1109 870 153 21 101 chr11 68733103 68733292 -53110564 + B2_Mm2 SINE B2 22 195 0 5 1109 404 213 11 51 chr11 68733332 68733464 -53110392 + PB1D9 SINE Alu 19 138 -11 5 1109 399 238 23 38 chr11 68733443 68733574 -53110282 - RLTR11A2 LTR ERVK -41 412 284 5 1109 590 244 41 174 chr11 68733603 68733970 -53109886 - RLTR11A2 LTR ERVK -135 318 1 5 1109 373 198 136 0 chr11 68733970 68734051 -53109805 + B1_Mur1 SINE Alu 53 144 -5 5 1109 332 238 0 16 chr11 68734103 68734167 -53109689 - RSINE1 SINE B4 -101 64 2 5 1109 304 275 12 70 chr11 68734259 68734345 -53109511 - B1F1 SINE Alu -68 81 1 5 1109 235 286 21 106 chr11 68734261 68734355 -53109501 - ID_B1 SINE B4 -67 157 72 5 1109 455 222 17 8 chr11 68734376 68734494 -53109362 + L1MA8 LINE L1 6128 6246 -45 5 1109 309 341 31 16 chr11 68734703 68734831 -53109025 + MLT1F LTR MaLR 438 567 -2 5 1109 286 179 208 59 chr11 68734986 68735087 -53108769 - PB1D10 SINE Alu 0 117 2 5 1109 192 200 0 0 chr11 68736201 68736241 -53107615 + C-rich Low_complexity Low_complexity 2 41 0 5 1109 2127 105 42 174 chr11 68736686 68737181 -53106675 + RLTR23 LTR ERV1 1 430 0 5 1109 395 252 191 0 chr11 68737218 68737333 -53106523 + B1F SINE Alu 13 149 0 5 1109 874 171 20 0 chr11 68737342 68737488 -53106368 + B1_Mur2 SINE Alu 1 149 0 5 1109 819 169 6 75 chr11 68737509 68737605 -53106251 + B1_Mur3 SINE Alu 1 91 -58 5 1109 267 31 0 0 chr11 68737605 68737637 -53106219 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1109 819 169 6 75 chr11 68737637 68737700 -53106156 + B1_Mur3 SINE Alu 92 149 0 5 1109 297 285 41 116 chr11 68737823 68737970 -53105886 - MTEa-int LTR MaLR -886 694 559 5 1109 247 235 75 96 chr11 68738082 68738176 -53105680 - MTEa-int LTR MaLR -1488 92 1 5 1109 410 293 77 124 chr11 68738176 68738410 -53105446 - MTEa LTR MaLR 0 379 142 5 1109 1100 200 4 65 chr11 68738410 68738640 -53105216 + B3 SINE B2 1 216 0 5 1109 307 293 78 125 chr11 68738640 68738729 -53105127 - MTEa LTR MaLR -229 145 66 5 1109 1099 103 14 0 chr11 68738756 68738902 -53104954 + B1_Mur4 SINE Alu 3 150 0 5 1109 396 269 118 0 chr11 68738940 68739033 -53104823 + B1F SINE Alu 1 104 -45 5 1109 216 0 0 0 chr11 68739172 68739196 -53104660 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1109 438 36 0 0 chr11 68739196 68739252 -53104604 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 5 1109 1341 74 11 0 chr11 68739617 68739793 -53104063 - B2_Mm1t SINE B2 -14 179 2 5 1109 645 14 0 0 chr11 68740841 68740915 -53102941 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 5 1109 261 244 130 61 chr11 68740984 68740996 -53102860 - ID_B1 SINE B4 -5 219 172 5 1109 324 228 8 137 chr11 68740996 68741036 -53102820 - B1F2 SINE Alu -47 102 65 5 1109 372 94 0 0 chr11 68741036 68741089 -53102767 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1109 261 244 130 61 chr11 68741089 68741100 -53102756 - ID_B1 SINE B4 -53 171 151 5 1109 2060 163 36 56 chr11 68741100 68741549 -53102307 - RMER10A LTR ERVL 0 442 3 5 1109 324 228 8 137 chr11 68741549 68741613 -53102243 - B1F2 SINE Alu -88 61 1 5 1109 260 258 0 70 chr11 68741733 68741804 -53102052 - RSINE1 SINE B4 -88 77 12 5 1109 429 20 0 0 chr11 68741816 68741866 -53101990 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1109 507 200 0 236 chr11 68741867 68741952 -53101904 - B1_Mur2 SINE Alu -13 136 72 5 1109 1237 68 0 0 chr11 68741952 68742099 -53101757 - B1_Mm SINE Alu 0 147 1 5 1109 507 200 0 236 chr11 68742099 68742170 -53101686 - B1_Mur2 SINE Alu -78 71 17 5 1109 1168 62 7 0 chr11 68742172 68742316 -53101540 + B1_Mus1 SINE Alu 4 148 0 5 1109 237 132 0 0 chr11 68742317 68742355 -53101501 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1109 830 176 69 17 chr11 68742776 68742949 -53100907 - B3 SINE B2 -33 183 2 5 1109 306 213 66 0 chr11 68742992 68743053 -53100803 + RSINE1 SINE B4 3 67 -98 5 1109 362 196 26 9 chr11 68743104 68743217 -53100639 + GA-rich Low_complexity Low_complexity 6 120 0 5 1109 355 317 16 24 chr11 68743284 68743410 -53100446 + ID_B1 SINE B4 100 224 0 5 1109 532 211 0 0 chr11 68743411 68743506 -53100350 + B1_Mur2 SINE Alu 3 97 -52 5 1109 247 225 48 48 chr11 68743556 68743640 -53100216 + HAL1 LINE L1 2070 2153 -354 5 1109 561 249 92 51 chr11 68743912 68744107 -53099749 + B3 SINE B2 2 204 -12 5 1109 547 126 4 0 chr11 68744730 68744825 -53099031 + B1_Mus2 SINE Alu 43 137 -10 5 1109 451 289 39 8 chr11 68744884 68745013 -53098843 + RSINE1 SINE B4 5 137 -28 5 1109 1080 43 50 21 chr11 68745043 68745184 -53098672 - B1_Mus2 SINE Alu -1 146 2 5 1109 812 142 90 0 chr11 68745213 68745347 -53098509 + B1_Mus1 SINE Alu 2 147 -1 6 1109 1009 222 14 41 chr11 68745443 68745664 -53098192 + B3 SINE B2 2 216 0 6 1109 404 263 21 0 chr11 68745755 68745850 -53098006 - PB1 SINE Alu -30 97 1 6 1109 398 145 29 0 chr11 68745874 68745943 -53097913 + B1_Mur3 SINE Alu 78 148 -1 6 1109 234 0 0 0 chr11 68745947 68745973 -53097883 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 6 1109 803 121 83 0 chr11 68745976 68746108 -53097748 - RLTR14 LTR ERV1 -236 146 4 6 1109 1523 78 16 0 chr11 68746569 68746761 -53097095 - B2_Mm2 SINE B2 0 195 1 6 1109 266 344 70 8 chr11 68746875 68747004 -53096852 - ORR1E LTR MaLR -222 137 1 6 1109 505 325 6 12 chr11 68747123 68747285 -53096571 + RSINE1 SINE B4 4 164 -1 6 1109 333 0 0 0 chr11 68747286 68747323 -53096533 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1109 772 238 56 39 chr11 68747344 68747523 -53096333 + B3A SINE B2 1 182 -16 6 1109 539 386 86 37 chr11 68747644 68747909 -53095947 - MLT1I LTR MaLR -19 392 119 6 1109 785 272 111 42 chr11 68747909 68748243 -53095613 - ORR1E LTR MaLR -2 357 1 6 1109 539 386 86 37 chr11 68748243 68748351 -53095505 - MLT1I LTR MaLR -293 118 1 6 1109 976 177 132 6 chr11 68748518 68748700 -53095156 - B3 SINE B2 -9 207 3 6 1109 1152 121 11 23 chr11 68748732 68748891 -53094965 + B2_Mm2 SINE B2 2 160 -35 6 1109 396 0 0 0 chr11 68748891 68748935 -53094921 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 1109 1152 121 11 23 chr11 68748935 68748952 -53094904 + B2_Mm2 SINE B2 161 176 -19 6 1109 829 163 67 0 chr11 68748964 68749099 -53094757 + B1_Mus1 SINE Alu 2 145 -3 6 1109 1295 199 0 0 chr11 68749155 68749371 -53094485 + B3 SINE B2 1 216 0 6 1109 370 224 28 2 chr11 68749441 68749527 -53094329 + ID4_ SINE ID 6 93 -59 6 1109 244 246 0 81 chr11 68749941 68750003 -53093853 + ID_B1 SINE B4 160 216 -8 6 1109 531 78 0 0 chr11 68750003 68750080 -53093776 + (CAG)n Simple_repeat Simple_repeat 1 77 0 6 1109 1053 265 68 58 chr11 68750622 68750681 -53093175 - MER2 DNA MER2_type 0 345 285 6 1109 1433 71 22 0 chr11 68750681 68750865 -53092991 + B2_Mm2 SINE B2 2 189 -6 6 1109 1053 265 68 58 chr11 68750865 68751130 -53092726 - MER2 DNA MER2_type -61 284 18 6 1109 1182 70 0 0 chr11 68751854 68751997 -53091859 - B1_Mus1 SINE Alu -5 143 1 6 1109 28 48 0 0 chr11 68752023 68752065 -53091791 + AT_rich Low_complexity Low_complexity 1 42 0 6 1109 329 309 36 29 chr11 68752309 68752449 -53091407 + B1F SINE Alu 1 141 -8 6 1109 950 176 0 0 chr11 68752455 68752603 -53091253 + B1_Mur1 SINE Alu 2 149 0 6 1109 563 338 51 47 chr11 68752603 68752839 -53091017 - MIR SINE MIR -4 258 22 6 1109 1979 204 107 51 chr11 68753173 68753704 -53090152 + RLTR20B3 LTR ERVK 1 561 -16 6 1109 948 136 0 39 chr11 68754093 68754246 -53089610 - B1_Mur3 SINE Alu -1 148 2 6 1109 1280 124 0 15 chr11 68754412 68754608 -53089248 - B2_Mm2 SINE B2 -1 194 2 6 1109 231 271 200 27 chr11 68754608 68754715 -53089141 - ORR1E LTR MaLR -227 132 7 6 1109 241 333 149 0 chr11 68754719 68754806 -53089050 + B1F1 SINE Alu 5 104 -45 6 1109 391 252 122 0 chr11 68755014 68755121 -53088735 + ID_B1 SINE B4 81 200 -24 6 1109 236 211 70 0 chr11 68755235 68755292 -53088564 - Arthur1B DNA Tip100 -921 304 244 6 1109 671 218 13 52 chr11 68755311 68755466 -53088390 - B1_Mur1 SINE Alu 0 149 1 6 1109 204 67 0 0 chr11 68755466 68755496 -53088360 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1109 482 263 0 17 chr11 68755506 68755626 -53088230 - PB1D7 SINE Alu -1 119 2 6 1109 364 200 235 0 chr11 68755630 68755715 -53088141 - Arthur1B DNA Tip100 -1091 134 30 6 1109 513 183 12 0 chr11 68755722 68755804 -53088052 - RSINE1 SINE B4 -81 84 2 6 1109 467 274 0 19 chr11 68755847 68755955 -53087901 + PB1D10 SINE Alu 6 111 -6 6 1109 283 349 58 13 chr11 68755955 68756001 -53087855 + B4A SINE B4 91 251 -41 6 1109 220 281 134 106 chr11 68756068 68756351 -53087505 + L2c LINE L2 3076 3366 -21 6 1109 199 288 0 57 chr11 68756658 68756728 -53087128 - L2b LINE L2 -6 3369 3304 6 1109 324 0 0 0 chr11 68757475 68757511 -53086345 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1109 225 0 0 0 chr11 68757511 68757535 -53086321 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1109 315 130 0 0 chr11 68758068 68758122 -53085734 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 6 1109 181 244 44 0 chr11 68758503 68758548 -53085308 + L2a LINE L2 2825 2871 -548 6 1109 1122 151 38 24 chr11 68758565 68758775 -53085081 + B3 SINE B2 4 216 0 6 1109 201 147 0 0 chr11 68758780 68758814 -53085042 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1109 423 283 180 25 chr11 68758821 68759148 -53084708 + L2a LINE L2 2877 3265 -161 6 1109 426 262 87 16 chr11 68759176 68759305 -53084551 - B1F1 SINE Alu -1 148 10 6 1109 897 153 20 14 chr11 68759352 68759498 -53084358 + B1_Mus1 SINE Alu 1 147 -1 6 1109 743 197 0 62 chr11 68759499 68759645 -53084211 - B1_Mur1 SINE Alu -12 137 1 6 1109 508 263 54 60 chr11 68760290 68760456 -53083400 - ID_B1 SINE B4 -59 165 1 6 1109 725 106 9 0 chr11 68760902 68761015 -53082841 + (GA)n Simple_repeat Simple_repeat 1 114 0 6 1109 394 368 26 0 chr11 68761430 68761585 -53082271 + MIRb SINE MIR 77 235 -33 6 1109 180 125 0 0 chr11 68761682 68761714 -53082142 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1109 410 226 104 0 chr11 68761714 68761820 -53082036 - PB1D10 SINE Alu 0 117 1 6 1109 250 210 113 0 chr11 68762073 68762135 -53081721 + ID4_ SINE ID 15 83 0 6 1109 25 0 0 0 chr11 68762136 68762161 -53081695 + AT_rich Low_complexity Low_complexity 1 25 0 6 1109 1487 44 17 6 chr11 68762162 68762343 -53081513 + B2_Mm2 SINE B2 1 183 -12 6 1109 472 194 53 53 chr11 68762343 68762456 -53081400 + PB1D9 SINE Alu 1 114 -6 6 1109 426 271 47 0 chr11 68762486 68762571 -53081285 + B1F1 SINE Alu 15 103 -46 6 1109 266 0 29 0 chr11 68762571 68762605 -53081251 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1109 314 322 102 0 chr11 68762605 68762637 -53081219 + B1_Mur4 SINE Alu 105 144 -6 6 1109 525 252 65 0 chr11 68762688 68762827 -53081029 + B1_Mur1 SINE Alu 2 149 0 6 1109 616 186 0 9 chr11 68762830 68762944 -53080912 + B1_Mus2 SINE Alu 29 141 -6 6 1109 344 258 44 88 chr11 68763112 68763248 -53080608 - MER106A DNA MER1_type -76 160 31 6 1109 796 99 0 18 chr11 68763796 68763809 -53080047 - B1_Mus1 SINE Alu -20 128 117 6 1109 369 0 0 0 chr11 68763809 68763850 -53080006 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1109 796 99 0 18 chr11 68763850 68763949 -53079907 - B1_Mus1 SINE Alu -32 116 18 6 1109 396 319 89 61 chr11 68763852 68764032 -53079824 - B4 SINE B4 -88 204 20 6 1109 1362 242 39 116 chr11 68763977 68764486 -53079370 + MER44B DNA MER2_type 75 544 -6 6 1109 1201 75 0 0 chr11 68765952 68766099 -53077757 - B1_Mus1 SINE Alu 0 148 2 6 1109 583 243 126 34 chr11 68766118 68766293 -53077563 + B3A SINE B2 2 192 -6 6 1109 779 182 14 20 chr11 68766300 68766446 -53077410 + B1_Mur3 SINE Alu 4 148 -1 6 1109 204 40 0 0 chr11 68766459 68766484 -53077372 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1109 221 57 0 28 chr11 68766564 68766600 -53077256 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1109 303 253 25 12 chr11 68766615 68766695 -53077161 - PB1D10 SINE Alu -3 114 34 6 1109 357 400 31 6 chr11 68766728 68766889 -53076967 - MIRb SINE MIR -89 179 15 6 1109 280 157 27 41 chr11 68767185 68767258 -53076598 + (CACCC)n Simple_repeat Simple_repeat 5 76 0 6 1109 229 281 24 35 chr11 68768787 68768872 -53074984 - PB1D7 SINE Alu 0 120 37 6 1109 186 43 0 0 chr11 68768931 68768954 -53074902 + (G)n Simple_repeat Simple_repeat 1 23 0 6 1109 829 94 34 14 chr11 68769184 68769484 -53074372 + (TG)n Simple_repeat Simple_repeat 1 306 0 6 1109 941 101 6 16 chr11 68769497 68769679 -53074177 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1109 189 372 85 0 chr11 68771412 68771506 -53072350 + L2a LINE L2 3018 3119 -307 6 1109 264 260 54 14 chr11 68771529 68771603 -53072253 + B1F SINE Alu 73 149 0 6 1109 306 125 0 0 chr11 68771603 68771651 -53072205 + (A)n Simple_repeat Simple_repeat 1 48 0 6 1109 256 224 17 0 chr11 68771819 68771877 -53071979 + B3A SINE B2 124 182 -16 6 1109 784 230 38 12 chr11 68771918 68772121 -53071735 + B3A SINE B2 2 205 -11 6 1109 1204 69 0 0 chr11 68772151 68772295 -53071561 + B1_Mus2 SINE Alu 1 144 -3 6 1109 279 0 0 0 chr11 68772295 68772326 -53071530 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1109 609 141 66 262 chr11 68772338 68772521 -53071335 + B1_Mur3 SINE Alu 2 148 -1 6 1109 333 218 0 130 chr11 68772745 68772845 -53071011 + PB1D10 SINE Alu 28 114 -3 6 1109 492 301 0 42 chr11 68772855 68772997 -53070859 + B4A SINE B4 157 292 0 6 1109 660 168 0 9 chr11 68773009 68773117 -53070739 + B1_Mus2 SINE Alu 40 146 -1 6 1109 238 263 0 34 chr11 68773127 68773186 -53070670 + RSINE1 SINE B4 107 163 -2 6 1109 23 0 0 0 chr11 68773186 68773209 -53070647 + AT_rich Low_complexity Low_complexity 1 23 0 6 1109 393 274 202 34 chr11 68773354 68773592 -53070264 - B4A SINE B4 -14 278 1 6 1109 336 276 40 118 chr11 68773754 68773778 -53070078 - MT2B LTR ERVL -286 315 292 6 1109 216 0 0 0 chr11 68773778 68773802 -53070054 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1109 336 276 40 118 chr11 68773802 68773929 -53069927 - MT2B LTR ERVL -310 291 176 6 1109 293 328 60 8 chr11 68773827 68773944 -53069912 - B4A SINE B4 -87 205 83 6 1109 393 278 10 10 chr11 68773943 68774041 -53069815 - PB1 SINE Alu 0 127 30 6 1109 543 185 204 160 chr11 68774450 68774535 -53069321 + B3 SINE B2 2 56 -160 7 1109 1229 21 14 14 chr11 68774535 68774682 -53069174 - B1_Mm SINE Alu 0 147 1 7 1109 543 185 204 160 chr11 68774682 68774802 -53069054 + B3 SINE B2 57 216 0 7 1109 827 136 62 35 chr11 68774806 68774951 -53068905 + B1_Mur4 SINE Alu 2 150 0 7 1109 912 235 48 14 chr11 68775268 68775475 -53068381 + B3 SINE B2 2 215 -1 7 1109 1153 85 0 0 chr11 68775483 68775624 -53068232 + B1_Mus2 SINE Alu 1 141 -6 7 1109 189 74 0 0 chr11 68775626 68775653 -53068203 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1109 250 138 0 275 chr11 68775670 68775750 -53068106 + RSINE1 SINE B4 108 165 0 7 1109 1684 139 18 73 chr11 68775767 68776108 -53067748 + RLTRETN_Mm LTR ERVK 1 322 0 7 1109 334 239 14 0 chr11 68776127 68776198 -53067658 + MTEa-int LTR MaLR 1484 1555 -25 7 1109 685 165 9 0 chr11 68776212 68776327 -53067529 + B1_Mur4 SINE Alu 35 150 0 7 1109 1014 290 73 51 chr11 68776371 68776727 -53067129 + MTEa LTR MaLR 1 364 -15 7 1109 465 209 11 21 chr11 68776843 68776936 -53066920 - PB1D10 SINE Alu -20 97 6 7 1109 287 275 65 56 chr11 68776845 68776953 -53066903 - B4 SINE B4 -105 187 79 7 1109 359 257 0 0 chr11 68777274 68777344 -53066512 + ID4_ SINE ID 3 72 -11 7 1109 3464 132 175 8 chr11 68777391 68778019 -53065837 - RMER19A LTR ERVK -4 733 1 7 1109 899 62 0 0 chr11 68778045 68778158 -53065698 - B1_Mm SINE Alu 0 147 35 7 1109 374 185 211 32 chr11 68778177 68778272 -53065584 + B1_Mur3 SINE Alu 2 113 -36 7 1109 400 239 7 56 chr11 68778372 68778514 -53065342 + L1MC3 LINE L1 5698 5832 -1953 7 1109 291 256 120 22 chr11 68778515 68778607 -53065249 + PB1D10 SINE Alu 19 119 -1 7 1109 648 181 39 29 chr11 68778640 68778790 -53065066 + B1_Mur2 SINE Alu 1 147 -2 7 1109 450 286 25 51 chr11 68778842 68778895 -53064961 + PB1D10 SINE Alu 1 49 -68 7 1109 1084 99 75 17 chr11 68778895 68779069 -53064787 - B2_Mm1a SINE B2 -7 186 3 7 1109 450 286 25 51 chr11 68779069 68779133 -53064723 + PB1D10 SINE Alu 50 115 -2 7 1109 400 278 86 30 chr11 68779205 68779402 -53064454 + L1MC3 LINE L1 6934 7141 -644 7 1109 198 0 0 0 chr11 68779422 68779444 -53064412 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 7 1109 380 282 44 110 chr11 68779462 68779626 -53064230 - B2_Mm2 SINE B2 -3 190 38 7 1109 883 158 22 0 chr11 68779640 68779779 -53064077 + B1_Mus2 SINE Alu 5 146 -1 7 1109 212 222 0 22 chr11 68779783 68779829 -53064027 - B3 SINE B2 -153 63 19 7 1109 937 109 0 15 chr11 68779828 68779959 -53063897 + B1_Mur4 SINE Alu 22 150 0 7 1109 189 74 0 0 chr11 68779978 68780005 -53063851 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1109 379 270 128 28 chr11 68780078 68780219 -53063637 - MER5A DNA MER1_type -30 159 5 7 1109 308 223 30 152 chr11 68780243 68780375 -53063481 + PB1D10 SINE Alu 1 116 -1 7 1109 237 302 88 72 chr11 68780677 68780802 -53063054 - MIR SINE MIR -92 170 44 7 1109 301 256 114 16 chr11 68782788 68782911 -53060945 - B1_Mur2 SINE Alu -1 148 14 7 1109 205 331 76 76 chr11 68782933 68783090 -53060766 + MIRb SINE MIR 95 251 -17 7 1109 1098 91 6 22 chr11 68783093 68783273 -53060583 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 7 1109 221 93 74 0 chr11 68783277 68783331 -53060525 + CT-rich Low_complexity Low_complexity 2 59 0 7 1109 395 292 30 8 chr11 68783344 68783475 -53060381 - B1F SINE Alu -13 136 3 7 1109 243 256 98 0 chr11 68783636 68783718 -53060138 - MIR SINE MIR -79 129 40 7 1109 203 286 20 0 chr11 68787932 68787981 -53055875 + L2a LINE L2 3347 3396 -30 7 1109 192 77 0 0 chr11 68788470 68788496 -53055360 + (TCTCCC)n Simple_repeat Simple_repeat 5 30 0 7 1109 741 68 2 16 chr11 68788530 68788646 -53055210 - B1_Mus2 SINE Alu -22 127 16 7 1109 358 233 107 50 chr11 68788557 68788697 -53055159 - B4A SINE B4 -98 194 47 7 1109 548 197 34 96 chr11 68788726 68788872 -53054984 + B1_Mur1 SINE Alu 2 138 -11 7 1109 198 103 0 0 chr11 68788876 68788905 -53054951 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 7 1109 886 235 45 20 chr11 68789804 68790004 -53053852 + B3 SINE B2 1 205 -11 7 1109 348 315 9 9 chr11 68790130 68790242 -53053614 - Charlie4a DNA MER1_type -22 486 375 7 1109 332 236 157 0 chr11 68790242 68790331 -53053525 - B1_Mur1 SINE Alu -1 148 46 7 1109 645 262 80 12 chr11 68790318 68790346 -53053510 - B3 SINE B2 -37 179 150 7 1109 681 82 0 0 chr11 68790346 68790443 -53053413 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 1109 645 262 80 12 chr11 68790443 68790576 -53053280 - B3 SINE B2 -67 149 8 7 1109 388 263 199 33 chr11 68790580 68790761 -53053095 - B3 SINE B2 -5 211 1 7 1109 478 236 26 43 chr11 68790764 68790879 -53052977 - PB1D10 SINE Alu -4 113 1 7 1109 757 191 73 0 chr11 68790925 68791061 -53052795 + B1_Mus2 SINE Alu 2 147 0 7 1109 26 23 0 23 chr11 68791072 68791091 -53052765 + AT_rich Low_complexity Low_complexity 1 19 0 7 1109 1228 47 0 20 chr11 68791091 68791242 -53052614 - B1_Mus1 SINE Alu 0 148 1 7 1109 26 23 0 23 chr11 68791242 68791266 -53052590 + AT_rich Low_complexity Low_complexity 1 24 0 7 1109 1650 26 0 5 chr11 68791267 68791457 -53052399 - B2_Mm1a SINE B2 -4 189 1 7 1109 771 191 156 6 chr11 68791464 68791643 -53052213 - B3 SINE B2 -5 211 6 7 1109 442 193 102 0 chr11 68791914 68792002 -53051854 + PB1D7 SINE Alu 1 97 -23 7 1109 322 238 0 130 chr11 68792064 68792156 -53051700 + B3A SINE B2 1 80 -118 7 1109 434 296 13 58 chr11 68792194 68792210 -53051646 + ID_B1 SINE B4 78 224 0 7 1109 765 212 14 7 chr11 68792210 68792348 -53051508 + B1_Mur1 SINE Alu 11 149 0 7 1109 1101 213 135 9 chr11 68792358 68792685 -53051171 - ORR1D1 LTR MaLR -4 370 3 7 1109 809 264 59 15 chr11 68792738 68792942 -53050914 - B3 SINE B2 -3 213 1 7 1109 466 242 83 8 chr11 68793285 68793406 -53050450 + B1F SINE Alu 4 133 -16 7 1109 1441 54 54 5 chr11 68793582 68793768 -53050088 + B2_Mm2 SINE B2 1 195 0 7 1109 1176 44 0 0 chr11 68793774 68793911 -53049945 + B1_Mus2 SINE Alu 1 137 -10 7 1109 314 276 47 47 chr11 68794999 68795081 -53048775 - L1MEg LINE L1 -4114 1970 1893 7 1109 1085 109 0 0 chr11 68795081 68795228 -53048628 - B1_Mus2 SINE Alu 0 147 1 7 1109 314 276 47 47 chr11 68795228 68795274 -53048582 - L1MEg LINE L1 -4192 1892 1842 7 1109 372 43 0 0 chr11 68795274 68795320 -53048536 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1109 278 105 0 0 chr11 68795348 68795386 -53048470 - B1_Mur4 SINE Alu -111 39 2 7 1109 724 295 18 45 chr11 68795535 68795755 -53048101 + ID_B1 SINE B4 3 216 -8 7 1109 1057 108 46 32 chr11 68797042 68797228 -53046628 + B2_Mm2 SINE B2 5 184 -11 7 1109 592 184 241 62 chr11 68797264 68797426 -53046430 - B3 SINE B2 -6 210 20 7 1109 2655 154 38 32 chr11 68797425 68797895 -53045961 + RLTR17 LTR ERVK 204 676 -16 7 1109 198 0 0 0 chr11 68797895 68797917 -53045939 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1109 256 200 50 0 chr11 68798023 68798083 -53045773 + B1_Mus2 SINE Alu 84 146 -1 7 1109 423 85 0 0 chr11 68798213 68798272 -53045584 - B1_Mur4 SINE Alu 0 150 92 7 1109 569 166 259 0 chr11 68798440 68798583 -53045273 + B3 SINE B2 5 176 -22 7 1109 559 295 36 60 chr11 68798993 68799136 -53044720 - RSINE1 SINE B4 -1 164 25 7 1109 1018 161 166 0 chr11 68799136 68799329 -53044527 + URR1B DNA MER1_type 1 225 0 7 1109 559 295 36 60 chr11 68799329 68799351 -53044505 - RSINE1 SINE B4 -141 24 3 7 1109 598 165 202 0 chr11 68799393 68799502 -53044354 - B1_Mur1 SINE Alu -9 140 10 7 1109 239 270 15 60 chr11 68799756 68799823 -53044033 - ID4 SINE ID -3 80 17 7 1109 1181 48 7 14 chr11 68800325 68800473 -53043383 + B1_Mus2 SINE Alu 1 147 0 7 1109 252 0 0 0 chr11 68800475 68800503 -53043353 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1109 561 126 153 13 chr11 68800577 68800702 -53043154 + B1_Mm SINE Alu 2 148 0 7 1109 216 0 0 0 chr11 68800714 68800738 -53043118 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1109 297 291 38 0 chr11 68801041 68801120 -53042736 + PB1D10 SINE Alu 35 116 -1 7 1109 782 128 95 29 chr11 68802235 68802372 -53041484 + B2_Mm2 SINE B2 2 147 -48 7 1109 1005 88 118 86 chr11 68802378 68802565 -53041291 + B2_Mm2 SINE B2 1 193 -2 7 1109 811 89 87 24 chr11 68802726 68802852 -53041004 - B1_Mm SINE Alu 0 147 14 7 1109 1312 64 0 6 chr11 68802927 68803101 -53040755 + B2_Mm2 SINE B2 19 191 -4 7 1109 253 336 97 49 chr11 68803158 68803302 -53040554 + MER102c DNA MER1_type 74 224 -107 7 1109 1059 67 85 62 chr11 68807565 68807741 -53036115 - B2_Mm2 SINE B2 -2 193 14 7 1109 786 218 40 88 chr11 68807951 68808177 -53035679 + B3 SINE B2 2 216 0 7 1109 307 362 58 7 chr11 68808187 68808326 -53035530 + L1MC LINE L1 5592 5737 -2145 7 1109 865 233 36 16 chr11 68808471 68808663 -53035193 - B3A SINE B2 0 198 3 7 1109 310 278 69 0 chr11 68808716 68808788 -53035068 - ID4 SINE ID -5 78 2 7 1109 231 232 18 0 chr11 68808899 68808955 -53034901 + L1_Mm LINE L1 4773 4829 -1054 7 1109 212 328 0 0 chr11 68808957 68809015 -53034841 - ID SINE ID -144 80 23 7 1109 211 286 48 0 chr11 68808965 68809028 -53034828 - ID4 SINE ID -12 71 6 7 1109 514 323 46 0 chr11 68809053 68809183 -53034673 + B3A SINE B2 39 174 -24 7 1109 754 158 36 36 chr11 68809216 68809354 -53034502 + B1_Mur2 SINE Alu 12 149 0 7 1109 709 74 16 74 chr11 68809361 68809482 -53034374 + B1_Mur4 SINE Alu 2 120 0 8 1109 422 184 0 0 chr11 68809503 68809579 -53034277 + U6 snRNA snRNA 1 76 -31 8 1109 306 0 0 0 chr11 68809580 68809614 -53034242 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1109 709 108 15 0 chr11 68809615 68809745 -53034111 + Lx9 LINE L1 7512 7643 -1 8 1109 771 266 45 0 chr11 68809938 68810137 -53033719 - ID_B1 SINE B4 -14 210 3 8 1109 455 263 179 12 chr11 68810242 68810415 -53033441 - B3 SINE B2 -13 203 2 8 1109 24 32 0 0 chr11 68810425 68810456 -53033400 + AT_rich Low_complexity Low_complexity 1 31 0 8 1109 887 132 8 0 chr11 68810484 68810613 -53033243 - B1_Mur4 SINE Alu -12 138 9 8 1109 501 256 144 0 chr11 68810647 68810772 -53033084 - RSINE1 SINE B4 -19 146 4 8 1109 195 268 0 67 chr11 68810787 68810847 -53033009 + MIRb SINE MIR 210 265 -3 8 1109 211 247 88 38 chr11 68811050 68811130 -53032726 - L3 LINE CR1 -3511 978 895 8 1109 263 292 0 0 chr11 68811578 68811650 -53032206 + ID4 SINE ID 2 73 -10 8 1109 323 234 178 116 chr11 68811757 68811779 -53032077 - ID_B1 SINE B4 -46 246 204 8 1109 534 171 67 0 chr11 68811779 68811884 -53031972 - PB1D9 SINE Alu -2 118 7 8 1109 323 234 178 116 chr11 68811884 68811975 -53031881 - ID_B1 SINE B4 -46 203 15 8 1109 437 283 11 0 chr11 68812028 68812120 -53031736 - B3A SINE B2 -105 93 1 8 1109 848 163 35 7 chr11 68812122 68812264 -53031592 - B1_Mus2 SINE Alu 0 147 2 8 1109 392 296 91 58 chr11 68812318 68812472 -53031384 - B3A SINE B2 -38 160 2 8 138 2086 196 146 10 chr11 68812474 68812968 -53030888 + RMER15 LTR ERVL 4 564 -11 8 1110 1296 97 49 0 chr11 68813090 68813275 -53030581 - B2_Mm2 SINE B2 0 195 2 8 1110 338 286 37 37 chr11 68815507 68815616 -53028240 + B3A SINE B2 55 163 -35 8 1110 353 212 87 48 chr11 68816170 68816274 -53027582 + B1_Mur4 SINE Alu 42 149 -1 8 1110 1180 69 0 0 chr11 68816312 68816457 -53027399 - B1_Mus1 SINE Alu -1 147 3 8 1110 275 212 34 45 chr11 68816570 68816684 -53027172 + B3 SINE B2 1 177 -39 8 1110 276 264 41 14 chr11 68816686 68816759 -53027097 + RSINE1 SINE B4 29 103 -62 8 1110 500 253 62 46 chr11 68816769 68816964 -53026892 + B3A SINE B2 1 198 0 8 1110 440 295 26 39 chr11 68817008 68817163 -53026693 + ID_B1 SINE B4 72 224 0 8 1110 360 0 0 0 chr11 68817601 68817641 -53026215 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1110 351 0 0 0 chr11 68817641 68817679 -53026177 + (TC)n Simple_repeat Simple_repeat 1 39 0 8 1110 585 278 70 27 chr11 68817842 68818027 -53025829 + MLT1A0 LTR MaLR 1 193 -172 8 1110 872 212 103 8 chr11 68818075 68818337 -53025519 + RLTR33 LTR ERVK 175 550 -128 8 1110 331 298 64 0 chr11 68818542 68818636 -53025220 + MLT1A0 LTR MaLR 248 347 -18 8 1110 769 171 0 0 chr11 68819011 68819134 -53024722 + B1_Mur1 SINE Alu 2 124 -25 8 1110 405 0 0 0 chr11 68819138 68819183 -53024673 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1110 603 288 19 26 chr11 68819195 68819353 -53024503 + RSINE1 SINE B4 3 151 -141 8 1110 223 327 225 5 chr11 68819465 68819683 -53024173 + L2b LINE L2 2050 2315 -1104 8 1110 782 261 43 32 chr11 68819876 68820062 -53023794 + ID_B1 SINE B4 2 189 -35 8 1110 1504 72 5 0 chr11 68820067 68820261 -53023595 - B2_Mm2 SINE B2 0 195 1 8 1110 250 297 0 30 chr11 68820463 68820529 -53023327 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 8 1110 309 271 0 0 chr11 68820473 68820543 -53023313 + BC1_Mm scRNA scRNA 18 87 -65 8 1110 326 287 26 61 chr11 68820722 68820837 -53023019 - PB1D10 SINE Alu -2 115 5 8 1110 391 228 203 0 chr11 68820963 68821086 -53022770 + B1_Mur1 SINE Alu 2 149 0 8 1110 477 98 294 0 chr11 68821194 68821286 -53022570 + B1_Mur4 SINE Alu 12 130 -20 8 1110 513 232 228 18 chr11 68821289 68821460 -53022396 - ID_B1 SINE B4 -16 208 2 8 1110 336 361 28 0 chr11 68821474 68821582 -53022274 + L2b LINE L2 3239 3349 -26 8 1110 351 96 0 0 chr11 68821596 68821648 -53022208 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 8 1110 666 171 23 30 chr11 68822083 68822216 -53021640 + B1F2 SINE Alu 18 149 0 8 1110 1380 55 55 0 chr11 68822218 68822400 -53021456 + B2_Mm1t SINE B2 1 192 -1 8 1110 285 174 216 39 chr11 68822445 68822547 -53021309 - MTB_Mm LTR MaLR -287 120 1 8 1110 185 305 12 47 chr11 68822640 68822726 -53021130 + L4 LINE RTE 167 249 -1780 8 1110 478 189 170 0 chr11 68822786 68822892 -53020964 - B1_Mur4 SINE Alu -22 128 5 8 1110 1319 88 39 0 chr11 68823012 68823194 -53020662 - B2_Mm2 SINE B2 -3 192 4 8 1110 1176 141 0 5 chr11 68823341 68823526 -53020330 - B2_Mm2 SINE B2 -10 185 2 8 1110 412 17 48 79 chr11 68823536 68823662 -53020194 + (TTA)n Simple_repeat Simple_repeat 2 123 0 8 1110 841 81 0 0 chr11 68823683 68823794 -53020062 - B2_Mm2 SINE B2 -84 111 1 8 1110 275 70 23 0 chr11 68823804 68823847 -53020009 - B1_Mus2 SINE Alu -5 142 99 8 1110 23 0 0 0 chr11 68823848 68823871 -53019985 + AT_rich Low_complexity Low_complexity 1 23 0 8 1110 643 217 62 0 chr11 68823904 68824033 -53019823 + ID_B1 SINE B4 88 224 0 8 1110 1240 54 0 0 chr11 68824155 68824302 -53019554 + B1_Mus1 SINE Alu 2 148 0 8 1110 445 273 88 62 chr11 68824357 68824517 -53019339 - B3A SINE B2 -34 164 1 8 1110 840 250 94 123 chr11 68824857 68824996 -53018860 + RLTR19 LTR ERVK 15 159 -340 8 1110 1199 89 67 6 chr11 68824996 68825176 -53018680 - B2_Mm2 SINE B2 -2 193 3 8 1110 180 0 0 0 chr11 68825179 68825199 -53018657 + (CTG)n Simple_repeat Simple_repeat 2 21 0 8 1110 866 61 0 82 chr11 68825199 68825394 -53018462 + (TAG)n Simple_repeat Simple_repeat 1 180 0 8 1110 840 250 94 123 chr11 68825394 68825591 -53018265 + RLTR19 LTR ERVK 160 345 -154 8 1110 826 287 48 47 chr11 68825760 68826097 -53017759 - RLTR16 LTR ERVK -299 393 5 8 1110 444 281 0 5 chr11 68826124 68826231 -53017625 + RLTR19 LTR ERVK 393 497 -2 8 1110 5289 49 2 3 chr11 68826331 68826970 -53016886 + L1Md_F2 LINE L1 5944 6581 -1 8 1110 298 284 44 10 chr11 68827094 68827194 -53016662 - PB1D10 SINE Alu -4 113 10 8 1110 968 91 68 0 chr11 68827298 68827430 -53016426 - B1_Mus2 SINE Alu -3 144 4 8 1110 232 274 102 42 chr11 68827460 68827578 -53016278 + MT2B2 LTR ERVL 152 276 -308 8 1110 346 268 113 45 chr11 68827474 68827607 -53016249 + ID_B1 SINE B4 82 223 -1 8 1110 182 62 31 0 chr11 68827626 68827658 -53016198 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 8 1110 995 116 0 13 chr11 68828052 68828201 -53015655 - B1_Mus1 SINE Alu -1 147 1 8 1110 313 187 160 0 chr11 68828218 68828307 -53015549 - B1F2 SINE Alu 0 120 9 8 1110 414 231 25 115 chr11 68828329 68828404 -53015452 - B3 SINE B2 -10 206 133 8 1110 976 53 106 0 chr11 68828404 68828536 -53015320 + B1_Mm SINE Alu 1 146 -1 8 1110 248 0 0 30 chr11 68828536 68828569 -53015287 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1110 414 231 25 115 chr11 68828569 68828614 -53015242 - B3 SINE B2 -84 132 97 8 1110 713 114 9 0 chr11 68828633 68828747 -53015109 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 8 1110 594 224 0 67 chr11 68829092 68829226 -53014630 - B1_Mur1 SINE Alu -22 127 3 8 1110 231 219 16 180 chr11 68829226 68829269 -53014587 - MT2B2 LTR ERVL -431 153 132 8 1110 376 316 20 20 chr11 68829392 68829492 -53014364 + B1F1 SINE Alu 2 101 -48 8 1110 722 149 96 7 chr11 68830390 68830525 -53013331 + B1_Mur3 SINE Alu 2 148 -1 8 1110 597 176 175 8 chr11 68830792 68830918 -53012938 + B1_Mur2 SINE Alu 1 147 -2 8 1110 1149 42 7 21 chr11 68831132 68831277 -53012579 + B1_Mus2 SINE Alu 5 147 0 8 1110 633 244 14 49 chr11 68831774 68831916 -53011940 + B1F2 SINE Alu 8 144 -5 8 1110 551 213 37 0 chr11 68831930 68832038 -53011818 + B3 SINE B2 6 117 -99 8 1110 533 95 0 23 chr11 68832262 68832348 -53011508 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 8 1110 293 320 0 0 chr11 68832510 68832607 -53011249 - Lx7 LINE L1 -462 7234 7138 8 1110 680 244 116 0 chr11 68832681 68832853 -53011003 - B3 SINE B2 -6 210 19 8 1110 927 139 37 48 chr11 68832981 68833170 -53010686 - B2_Mm2 SINE B2 0 195 9 8 1110 532 159 34 0 chr11 68833224 68833312 -53010544 - B1_Mus2 SINE Alu -11 136 46 8 1110 246 200 89 51 chr11 68833256 68833335 -53010521 - RLTR25B LTR ERVK -519 509 428 8 1110 444 129 49 245 chr11 68833328 68833353 -53010503 - B2_Mm2 SINE B2 -1 194 170 8 1110 1196 62 0 7 chr11 68833353 68833500 -53010356 + B1_Mus2 SINE Alu 2 147 0 8 1110 444 129 49 245 chr11 68833500 68833658 -53010198 - B2_Mm2 SINE B2 -26 169 47 8 1110 262 161 32 0 chr11 68833871 68833933 -53009923 - B3 SINE B2 -1 215 152 8 1110 1274 112 11 0 chr11 68833993 68834181 -53009675 - B2_Mm1a SINE B2 0 193 4 8 1110 1341 82 38 5 chr11 68834186 68834371 -53009485 - B2_Mm2 SINE B2 -4 191 1 8 1110 354 183 27 40 chr11 68834407 68834481 -53009375 + U4 snRNA snRNA 1 73 -72 8 1110 212 171 0 0 chr11 68835145 68835180 -53008676 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 8 1110 1015 234 5 59 chr11 68835198 68835379 -53008477 - B3 SINE B2 -6 210 29 8 1110 317 24 24 0 chr11 68835379 68835421 -53008435 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 8 1110 693 136 50 50 chr11 68835421 68835560 -53008296 - B1_Mus1 SINE Alu -9 139 1 8 1110 1015 234 5 59 chr11 68835560 68835599 -53008257 - B3 SINE B2 -188 28 2 8 1110 436 245 0 78 chr11 68836582 68836697 -53007159 + PB1D7 SINE Alu 9 114 -6 8 1110 1144 215 19 0 chr11 68836708 68836913 -53006943 + B3 SINE B2 3 211 -5 8 1110 984 85 7 28 chr11 68836915 68837060 -53006796 - B1_Mus2 SINE Alu -5 142 1 9 1110 279 0 0 0 chr11 68837329 68837360 -53006496 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1110 508 349 65 0 chr11 68838013 68838182 -53005674 + B4 SINE B4 2 181 -111 9 1110 715 154 16 16 chr11 68838299 68838424 -53005432 + B1_Mur1 SINE Alu 2 126 -23 9 1110 229 149 30 0 chr11 68838425 68838492 -53005364 + GA-rich Low_complexity Low_complexity 2 70 0 9 1110 464 267 65 42 chr11 68838505 68838673 -53005183 + B3 SINE B2 41 212 -4 9 1110 485 141 29 304 chr11 68838685 68838889 -53004967 + B1_Mur4 SINE Alu 3 150 0 9 1110 300 111 0 0 chr11 68838943 68838988 -53004868 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 9 1110 414 236 0 0 chr11 68839319 68839391 -53004465 + ID_B1 SINE B4 140 211 -13 9 1110 191 36 0 35 chr11 68839392 68839421 -53004435 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 9 1110 495 0 0 0 chr11 68840251 68840306 -53003550 + (TCTTG)n Simple_repeat Simple_repeat 5 59 0 9 1110 452 228 11 11 chr11 68840335 68840428 -53003428 - B3A SINE B2 -103 95 3 9 1110 563 236 47 8 chr11 68840444 68840572 -53003284 - B1F2 SINE Alu 0 149 17 9 1110 526 224 55 16 chr11 68840591 68840718 -53003138 - ID_B1 SINE B4 0 224 93 9 1110 195 139 0 0 chr11 68841679 68841715 -53002141 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1110 818 104 48 82 chr11 68841721 68841867 -53001989 - B1_Mur4 SINE Alu -9 141 1 9 1110 494 216 81 0 chr11 68841963 68842074 -53001782 + PB1D9 SINE Alu 1 120 0 9 1110 264 236 36 0 chr11 68842106 68842161 -53001695 + B1_Mur1 SINE Alu 92 148 -1 9 1110 619 129 0 189 chr11 68842206 68842310 -53001546 + B2_Mm2 SINE B2 10 92 -103 9 1110 1246 102 27 11 chr11 68842310 68842498 -53001358 - B2_Mm2 SINE B2 -4 191 1 9 1110 619 129 0 189 chr11 68842498 68842536 -53001320 + B2_Mm2 SINE B2 93 125 -70 9 1110 472 212 12 0 chr11 68842580 68842660 -53001196 + RSINE1 SINE B4 49 129 -36 9 1110 496 204 30 43 chr11 68842775 68842901 -53000955 - PB1D7 SINE Alu -2 125 5 9 1110 207 308 96 0 chr11 68842946 68842998 -53000858 + L2a LINE L2 3347 3403 -23 9 1110 479 230 43 26 chr11 68843004 68843120 -53000736 - B1_Mur1 SINE Alu 0 149 32 9 1110 736 130 124 44 chr11 68843603 68843740 -53000116 + B1_Mur2 SINE Alu 2 149 0 9 1110 384 239 222 0 chr11 68845602 68845719 -52998137 + B1_Mur1 SINE Alu 1 143 -6 9 1110 1229 68 0 0 chr11 68845934 68846081 -52997775 - B1_Mus2 SINE Alu 0 147 1 9 1110 784 181 23 0 chr11 68846142 68846275 -52997581 + B1_Mus1 SINE Alu 7 142 -6 9 1110 264 370 0 0 chr11 68846303 68846376 -52997480 + B1F1 SINE Alu 11 83 -66 9 1110 336 267 110 37 chr11 68846382 68846491 -52997365 - B3 SINE B2 -11 205 89 9 1110 510 250 0 40 chr11 68847150 68847275 -52996581 - B1_Mur2 SINE Alu 0 149 30 9 1110 373 202 155 40 chr11 68847938 68848094 -52995762 - PB1D9 SINE Alu -8 141 1 9 1110 232 313 57 57 chr11 68848513 68848672 -52995184 + YREP_Mm Unknown Unknown 136 294 -1518 9 1110 1135 42 0 7 chr11 68848547 68848690 -52995166 - B1_Mus1 SINE Alu -1 147 6 9 1110 381 194 17 127 chr11 68848731 68848849 -52995007 + PB1D7 SINE Alu 5 109 -11 9 1110 683 0 0 0 chr11 68850504 68850578 -52993278 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 9 1110 772 12 0 0 chr11 68850978 68851062 -52992794 + tRNA-Ser-TCY tRNA tRNA 1 84 -1 9 1110 679 14 0 0 chr11 68851354 68851428 -52992428 + tRNA-Thr-ACY tRNA tRNA 1 74 -3 9 1110 576 197 225 0 chr11 68852375 68852517 -52991339 + B3 SINE B2 1 174 -42 9 1110 459 0 0 0 chr11 68852609 68852660 -52991196 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1110 662 0 0 0 chr11 68853886 68853959 -52989897 + tRNA-Pro-CCG tRNA tRNA 1 73 -2 9 1110 659 0 0 0 chr11 68854485 68854557 -52989299 + tRNA-Asp-GAY tRNA tRNA 1 72 -3 9 1110 672 0 0 0 chr11 68854779 68854851 -52989005 - tRNA-Gly-GGA tRNA tRNA -3 72 1 9 1110 659 27 0 0 chr11 68855327 68855401 -52988455 + tRNA-Trp-TGG tRNA tRNA 1 74 -1 9 1110 44 0 0 0 chr11 68855558 68855602 -52988254 + AT_rich Low_complexity Low_complexity 1 44 0 9 1110 210 150 0 0 chr11 68855839 68855879 -52987977 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1110 1186 69 0 0 chr11 68856016 68856160 -52987696 + B1_Mus1 SINE Alu 5 148 0 9 1110 313 295 98 8 chr11 68856355 68856488 -52987368 - ID_B1 SINE B4 -2 222 78 9 1110 489 248 81 52 chr11 68857040 68857176 -52986680 - B1F2 SINE Alu 0 149 10 9 1110 21 0 0 0 chr11 68857891 68857912 -52985944 + AT_rich Low_complexity Low_complexity 1 21 0 9 1110 352 209 0 30 chr11 68857921 68858000 -52985856 - B1F SINE Alu -61 88 13 9 1110 250 279 0 92 chr11 68857932 68858019 -52985837 - ID_B1 SINE B4 -67 157 79 9 1110 366 272 76 0 chr11 68858186 68858278 -52985578 + B1F SINE Alu 51 149 0 9 1110 243 0 0 0 chr11 68858365 68858392 -52985464 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 9 1110 491 307 59 74 chr11 68858417 68858688 -52985168 + MER2 DNA MER2_type 79 345 0 9 1110 32 0 0 0 chr11 68858790 68858822 -52985034 + AT_rich Low_complexity Low_complexity 1 32 0 9 1110 827 109 15 15 chr11 68858833 68858963 -52984893 - B1_Mur4 SINE Alu -16 134 5 9 1110 25 0 0 0 chr11 68858963 68858988 -52984868 + AT_rich Low_complexity Low_complexity 1 25 0 9 1110 227 235 0 19 chr11 68860326 68860378 -52983478 - RMER6A LTR ERVK 0 756 706 9 1110 258 111 0 0 chr11 68860366 68860402 -52983454 - RMER6B LTR ERVK -425 36 1 9 1110 1075 70 8 5 chr11 68860660 68860813 -52983043 + B1_Mus1 SINE Alu 1 148 0 9 1110 214 241 126 92 chr11 68860822 68860909 -52982947 - PB1D7 SINE Alu -13 107 18 9 1110 520 136 252 8 chr11 68860966 68861085 -52982771 - B1_Mus1 SINE Alu 0 148 1 9 1110 180 0 0 0 chr11 68862471 68862491 -52981365 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1110 977 23 107 57 chr11 68862557 68862697 -52981159 + B1_Mus1 SINE Alu 1 147 -1 9 1110 25 0 0 0 chr11 68862737 68862762 -52981094 + AT_rich Low_complexity Low_complexity 1 25 0 9 1110 226 245 0 36 chr11 68862820 68862875 -52980981 - PB1D10 SINE Alu -2 115 63 9 1110 655 233 7 50 chr11 68862828 68862968 -52980888 - ID_B1 SINE B4 -10 214 81 9 1110 217 288 8 161 chr11 68863047 68863099 -52980757 - ID_B1 SINE B4 -108 116 79 9 1110 207 0 0 0 chr11 68863099 68863122 -52980734 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1110 217 288 8 161 chr11 68863122 68863193 -52980663 - ID SINE ID -146 78 12 9 1110 276 270 95 0 chr11 68863219 68863282 -52980574 - PB1D7 SINE Alu -26 94 26 9 1110 445 209 101 36 chr11 68863282 68863421 -52980435 + B1F2 SINE Alu 1 148 -1 9 1110 246 306 82 14 chr11 68864079 68864225 -52979631 - Lx8 LINE L1 -2 7471 7316 9 1110 438 244 40 73 chr11 68864648 68864772 -52979084 + B3 SINE B2 91 210 -6 9 1110 869 209 52 26 chr11 68864784 68864976 -52978880 + B3 SINE B2 4 200 -16 9 1110 459 127 91 40 chr11 68865153 68865267 -52978589 + ORR1A3 LTR MaLR 1 143 -235 9 1110 8363 149 85 120 chr11 68865267 68865670 -52978186 + ORR1A3-int LTR MaLR 1 440 -1523 9 1110 398 120 13 26 chr11 68865670 68865747 -52978109 + L1_Mus2 LINE L1 6491 6566 0 9 1110 8363 149 85 120 chr11 68865747 68865960 -52977896 + ORR1A3-int LTR MaLR 441 619 -1344 9 1110 1073 62 0 0 chr11 68865960 68866088 -52977768 - B1_Mus1 SINE Alu -19 129 2 9 1110 8363 149 85 120 chr11 68866088 68867485 -52976371 + ORR1A3-int LTR MaLR 620 1945 -18 9 1110 893 125 42 0 chr11 68867486 68867630 -52976226 + ORR1A3 LTR MaLR 9 158 -168 9 1110 359 161 0 0 chr11 68867629 68867685 -52976171 + ORR1A3 LTR MaLR 274 329 0 9 1110 485 245 0 83 chr11 68867715 68867740 -52976116 + ID_B1 SINE B4 69 211 -13 9 1110 859 117 0 23 chr11 68867740 68867871 -52975985 + B1_Mur3 SINE Alu 9 136 -13 9 1110 222 319 0 0 chr11 68867917 68867986 -52975870 + PB1D7 SINE Alu 30 98 -22 9 1110 1078 236 11 57 chr11 68868018 68868297 -52975559 + Lx6 LINE L1 7189 7454 -6 9 1110 26 0 0 0 chr11 68868299 68868325 -52975531 + AT_rich Low_complexity Low_complexity 1 26 0 9 1110 690 243 27 34 chr11 68868337 68868486 -52975370 + B1_Mur1 SINE Alu 2 149 0 9 1110 1259 41 0 0 chr11 68868489 68868634 -52975222 + B1_Mm SINE Alu 1 145 -2 9 1110 309 183 260 31 chr11 68868708 68868804 -52975052 + B3 SINE B2 95 212 -4 9 1110 652 261 0 0 chr11 68868821 68868951 -52974905 + B1F SINE Alu 1 130 -19 9 1110 759 164 12 126 chr11 68868975 68869142 -52974714 + B1_Mus1 SINE Alu 1 148 0 9 1110 261 260 22 135 chr11 68869222 68869311 -52974545 + RSINE1 SINE B4 56 134 -31 9 1110 339 141 0 0 chr11 68869322 68869386 -52974470 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 1110 234 217 523 0 chr11 68869536 68869621 -52974235 + B3A SINE B2 1 130 -68 9 1110 226 287 67 33 chr11 68869682 68869772 -52974084 + B1_Mm SINE Alu 27 119 -28 9 1110 1004 271 22 31 chr11 68869922 68870051 -52973805 + Lx7 LINE L1 5530 5658 -2038 9 1110 1166 89 0 0 chr11 68870051 68870197 -52973659 - B1_Mus1 SINE Alu -2 146 1 9 1110 1004 270 32 30 chr11 68870197 68870492 -52973364 + Lx7 LINE L1 5659 5957 -1739 9 1110 981 191 120 56 chr11 68870492 68870758 -52973098 + ORR1A4 LTR MaLR 1 283 -46 9 1110 886 124 123 12 chr11 68870773 68870936 -52972920 + B2_Mm2 SINE B2 1 181 -14 9 1110 1251 54 0 0 chr11 68870946 68871093 -52972763 - B1_Mus2 SINE Alu 0 147 1 9 1110 270 0 0 0 chr11 68871100 68871130 -52972726 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1110 366 125 0 18 chr11 68871207 68871264 -52972592 + ORR1A4 LTR MaLR 312 367 0 9 1110 898 242 62 15 chr11 68871268 68871541 -52972315 + Lx7 LINE L1 5991 6276 -1420 9 1110 205 156 0 0 chr11 68871594 68871626 -52972230 + (TAG)n Simple_repeat Simple_repeat 2 33 0 9 1110 946 69 107 0 chr11 68871710 68871841 -52972015 + B1_Mus2 SINE Alu 2 146 -1 9 1110 216 243 13 26 chr11 68871842 68871918 -52971938 + A-rich Low_complexity Low_complexity 3 77 0 1 1110 620 142 0 78 chr11 68872004 68872119 -52971737 + B1_Mur3 SINE Alu 21 126 -23 1 1110 683 0 0 0 chr11 68875821 68875895 -52967961 - tRNA-Ile-ATT tRNA tRNA -3 74 1 1 1110 679 14 0 0 chr11 68876245 68876319 -52967537 - tRNA-Thr-ACY tRNA tRNA -3 74 1 1 1110 749 24 0 0 chr11 68876541 68876625 -52967231 - tRNA-Ser-AGY tRNA tRNA -1 84 1 1 1110 209 222 0 0 chr11 68876949 68876994 -52966862 + A-rich Low_complexity Low_complexity 1 45 0 1 1110 652 14 0 0 chr11 68876996 68877068 -52966788 - tRNA-Trp-TGG tRNA tRNA -3 72 1 1 1110 527 192 59 81 chr11 68877822 68877958 -52965898 - B1F1 SINE Alu -7 142 10 1 1110 231 227 53 13 chr11 68877963 68878039 -52965817 + CT-rich Low_complexity Low_complexity 6 84 0 1 1110 189 0 0 0 chr11 68878191 68878212 -52965644 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1110 282 192 103 0 chr11 68878317 68878395 -52965461 - PB1D7 SINE Alu -3 117 32 1 1110 369 318 45 8 chr11 68878393 68878526 -52965330 - B1F2 SINE Alu -11 138 1 1 1110 519 82 0 0 chr11 68878578 68878651 -52965205 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 1 1110 24 0 0 0 chr11 68878900 68878924 -52964932 + AT_rich Low_complexity Low_complexity 1 24 0 1 1110 791 78 0 0 chr11 68878937 68879039 -52964817 - B1_Mus2 SINE Alu -2 145 44 1 1110 502 179 18 202 chr11 68879034 68879202 -52964654 + B1_Mur1 SINE Alu 13 149 0 1 1110 411 246 9 17 chr11 68879250 68879366 -52964490 + PB1D10 SINE Alu 3 117 0 1 1110 303 28 0 0 chr11 68879393 68879429 -52964427 + (TGG)n Simple_repeat Simple_repeat 2 37 0 1 1110 573 94 0 0 chr11 68879919 68880004 -52963852 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1110 585 269 21 0 chr11 68880837 68880978 -52962878 + B1F1 SINE Alu 6 149 0 1 1110 203 283 138 58 chr11 68881184 68881424 -52962432 + L2a LINE L2 2932 3190 -236 1 1110 789 11 0 0 chr11 68881602 68881692 -52962164 + (GAA)n Simple_repeat Simple_repeat 2 91 0 1 1110 751 191 0 34 chr11 68881720 68881866 -52961990 + B1_Mur2 SINE Alu 9 149 0 1 1110 203 114 23 0 chr11 68881866 68881910 -52961946 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1110 441 183 204 0 chr11 68881965 68882058 -52961798 - PB1D9 SINE Alu -6 114 3 1 1110 262 91 36 0 chr11 68882102 68882157 -52961699 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1110 424 263 130 18 chr11 68882173 68882335 -52961521 - B3A SINE B2 -13 203 27 1 1110 724 108 81 0 chr11 68882334 68882445 -52961411 - B1_Mur4 SINE Alu -5 145 26 1 1110 409 277 50 0 chr11 68882483 68882602 -52961254 - ID_B1 SINE B4 0 224 100 1 1110 321 315 83 0 chr11 68882510 68882618 -52961238 - PB1D10 SINE Alu 0 117 1 1 1110 240 320 13 0 chr11 68882661 68882736 -52961120 + ID4 SINE ID 1 76 -7 1 1110 272 260 53 40 chr11 68882865 68882941 -52960915 + ID4_ SINE ID 7 83 0 1 1110 281 287 11 0 chr11 68882941 68883035 -52960821 - L1MC4 LINE L1 -263 7779 7685 1 1110 378 143 0 0 chr11 68883199 68883262 -52960594 + (TTC)n Simple_repeat Simple_repeat 1 63 0 1 1110 309 258 242 13 chr11 68883376 68883533 -52960323 + L2a LINE L2 3233 3425 -1 1 1110 326 224 0 15 chr11 68885323 68885391 -52958465 + B1_Mus2 SINE Alu 3 69 -78 1 1110 999 54 38 8 chr11 68885430 68885561 -52958295 - B1_Mus1 SINE Alu -13 135 1 1 1110 22 70 0 0 chr11 68886484 68886527 -52957329 + AT_rich Low_complexity Low_complexity 1 43 0 1 1110 717 135 22 29 chr11 68886927 68887064 -52956792 + U8 snRNA snRNA 1 136 0 1 1110 293 337 10 0 chr11 68887613 68887711 -52956145 + MER63D DNA AcHobo 53 151 -910 1 1110 289 270 13 63 chr11 68887702 68887781 -52956075 + ID4_ SINE ID 5 79 -4 1 1110 562 245 28 14 chr11 68887789 68887934 -52955922 + B1F2 SINE Alu 1 147 -2 1 1110 888 63 0 52 chr11 68888199 68888333 -52955523 - B1_Mus1 SINE Alu -12 136 10 1 1110 497 200 60 0 chr11 68888517 68888617 -52955239 + U6 snRNA snRNA 2 107 0 1 1110 1567 43 5 0 chr11 68888708 68888892 -52954964 + B2_Mm1a SINE B2 2 186 -7 1 1110 221 140 0 23 chr11 68888994 68889038 -52954818 + GA-rich Low_complexity Low_complexity 2 44 0 1 1110 233 265 162 70 chr11 68889215 68889226 -52954630 - FAM SINE Alu 0 311 301 1 1110 1472 62 5 15 chr11 68889226 68889421 -52954435 - B2_Mm1t SINE B2 0 193 1 1 1110 814 171 11 1 chr11 68889421 68889560 -52954296 - B1_Mur3 SINE Alu 0 149 13 1 1110 315 319 32 104 chr11 68889427 68889581 -52954275 - B4 SINE B4 -70 222 80 1 1110 249 155 16 79 chr11 68889592 68889655 -52954201 + 4.5SRNA scRNA scRNA 28 86 -8 1 1110 351 146 120 16 chr11 68889600 68889694 -52954162 + B1_Mur3 SINE Alu 34 126 -23 1 1110 786 182 190 16 chr11 68889724 68889908 -52953948 + B3 SINE B2 1 216 0 1 1110 195 264 161 21 chr11 68890067 68890253 -52953603 + L2 LINE L2 1966 2177 -1242 1 1110 367 297 73 48 chr11 68890407 68890531 -52953325 - B4 SINE B4 -160 132 6 1 1110 315 146 0 0 chr11 68890643 68890698 -52953158 + (TCC)n Simple_repeat Simple_repeat 1 55 0 1 1110 21 36 0 0 chr11 68890774 68890802 -52953054 + AT_rich Low_complexity Low_complexity 1 28 0 1 1110 341 262 48 0 chr11 68890802 68890886 -52952970 - RSINE1 SINE B4 0 165 78 1 1110 710 307 41 23 chr11 68890948 68891168 -52952688 - ID_B1 SINE B4 0 224 1 1 1110 686 201 71 7 chr11 68891434 68891574 -52952282 - B1_Mur2 SINE Alu 0 149 1 1 1110 455 274 192 87 chr11 68892037 68892313 -52951543 + MLT1K LTR MaLR 8 312 -283 1 1110 2005 148 70 0 chr11 68892307 68892666 -52951190 - ORR1B1 LTR MaLR -10 384 1 1 1110 342 0 0 0 chr11 68892676 68892714 -52951142 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1110 416 246 176 8 chr11 68892751 68892882 -52950974 + B3A SINE B2 5 157 -41 1 1110 243 0 0 0 chr11 68892887 68892914 -52950942 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1110 236 265 44 0 chr11 68893551 68893619 -52950237 - PB1D10 SINE Alu -2 115 45 1 1110 976 143 7 0 chr11 68894025 68894172 -52949684 + B1_Mus1 SINE Alu 1 148 0 1 1110 408 224 0 0 chr11 68894473 68894558 -52949298 + PB1D10 SINE Alu 33 117 0 1 1110 987 106 13 19 chr11 68894559 68894713 -52949143 - B2_Mm2 SINE B2 -41 154 2 1 1110 345 47 0 0 chr11 68894738 68894781 -52949075 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1110 1089 105 0 0 chr11 68894781 68894924 -52948932 - B1_Mus1 SINE Alu -5 143 1 1 1110 437 234 267 43 chr11 68894928 68895089 -52948767 - B3A SINE B2 0 198 2 1 1110 224 228 40 17 chr11 68895100 68895172 -52948684 - PB1D7 SINE Alu -1 119 41 1 1110 830 283 68 45 chr11 68895166 68895503 -52948353 + MTD LTR MaLR 75 419 0 1 1110 306 373 54 34 chr11 68895687 68895834 -52948022 + ID_B1 SINE B4 8 157 -67 1 1110 234 227 164 24 chr11 68895775 68895865 -52947991 + B1F SINE Alu 10 118 -2 1 1110 410 311 50 22 chr11 68896150 68896331 -52947525 - B3A SINE B2 -10 188 3 1 1110 365 244 38 68 chr11 68896602 68896734 -52947122 - B1F SINE Alu 0 149 22 1 1110 884 161 0 7 chr11 68896765 68896915 -52946941 - B1_Mur3 SINE Alu 0 149 1 1 1110 354 298 40 101 chr11 68896772 68896800 -52947056 - B4 SINE B4 -73 219 137 1 1110 447 178 0 145 chr11 68896800 68896938 -52946918 - MT2B LTR ERVL -337 264 147 1 1110 354 298 40 101 chr11 68896938 68896970 -52946886 - B4 SINE B4 -73 136 34 1 1110 328 310 97 37 chr11 68896975 68897222 -52946634 + L1MC4a LINE L1 5680 5940 -1942 1 1110 234 308 0 0 chr11 68897424 68897489 -52946367 + B4 SINE B4 69 133 -159 1 1110 2969 50 0 266 chr11 68897535 68898182 -52945674 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1110 933 71 0 0 chr11 68898341 68898467 -52945389 - B1_Mus2 SINE Alu -20 127 2 1 1110 328 161 230 0 chr11 68898539 68898626 -52945230 - B3A SINE B2 -91 107 1 1 1110 301 248 34 68 chr11 68898652 68898686 -52945170 + L1MC4 LINE L1 2034 2063 -4152 1 1110 314 260 13 13 chr11 68898686 68898764 -52945092 + ID4 SINE ID 2 79 -4 1 1110 301 248 34 68 chr11 68898764 68898846 -52945010 + L1MC4 LINE L1 2064 2146 -4069 1 1110 1326 81 37 21 chr11 68898849 68899039 -52944817 + B2_Mm2 SINE B2 2 194 -1 1 1110 762 269 28 28 chr11 68899467 68899681 -52944175 - B3 SINE B2 -1 215 2 1 1110 334 283 46 19 chr11 68899694 68899802 -52944054 - PB1D10 SINE Alu -1 116 6 1 1110 237 83 0 0 chr11 68900047 68900083 -52943773 + (CTGTG)n Simple_repeat Simple_repeat 1 36 0 1 1110 304 22 44 0 chr11 68900339 68900384 -52943472 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1110 459 0 0 0 chr11 68901433 68901484 -52942372 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1110 339 25 0 0 chr11 68901484 68901523 -52942333 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1110 186 133 0 0 chr11 68902066 68902096 -52941760 + (CCG)n Simple_repeat Simple_repeat 2 31 0 1 1110 200 190 152 17 chr11 68902400 68902459 -52941397 - MIR SINE MIR -117 145 79 1 1110 186 174 0 0 chr11 68902728 68902774 -52941082 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1110 187 190 17 17 chr11 68904075 68904134 -52939722 + CT-rich Low_complexity Low_complexity 2 60 0 1 1110 189 74 0 0 chr11 68904267 68904294 -52939562 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1110 25 31 0 0 chr11 68904315 68904347 -52939509 + AT_rich Low_complexity Low_complexity 1 32 0 1 1110 529 217 35 0 chr11 68906630 68906745 -52937111 + PB1D9 SINE Alu 2 120 0 1 1110 501 210 126 0 chr11 68906773 68906892 -52936964 - B1_Mur2 SINE Alu -6 143 10 1 1110 696 203 20 40 chr11 68906936 68907085 -52936771 + B1_Mur4 SINE Alu 5 150 0 1 1110 1010 100 50 0 chr11 68907106 68907246 -52936610 - B1_Mus2 SINE Alu 0 147 1 1 1110 1244 114 0 28 chr11 68907274 68907455 -52936401 + B2_Mm2 SINE B2 1 176 -19 1 1110 521 154 0 71 chr11 68907474 68907574 -52936282 + B1_Mus2 SINE Alu 44 136 -11 1 1110 1039 59 81 0 chr11 68907574 68907710 -52936146 + B1_Mus1 SINE Alu 2 148 0 1 1110 521 154 0 71 chr11 68907710 68907721 -52936135 + B1_Mus2 SINE Alu 137 147 0 1 1110 198 296 93 58 chr11 68907927 68908013 -52935843 + MIRb SINE MIR 40 128 -140 1 1110 314 287 64 24 chr11 68909780 68909905 -52933951 + MIRb SINE MIR 101 230 -38 1 1110 252 0 0 0 chr11 68910045 68910073 -52933783 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1110 218 219 15 15 chr11 68918919 68918984 -52924872 + (CCCCAG)n Simple_repeat Simple_repeat 2 66 0 1 1110 517 255 76 25 chr11 68922259 68922416 -52921440 - B3 SINE B2 -6 210 46 1 1110 213 139 0 0 chr11 68922693 68922736 -52921120 + (TGG)n Simple_repeat Simple_repeat 2 44 0 1 1110 688 0 0 0 chr11 68923966 68924040 -52919816 + tRNA-Thr-ACY tRNA tRNA 1 74 -3 1 1110 189 0 0 0 chr11 68924326 68924347 -52919509 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1110 775 12 0 0 chr11 68924420 68924505 -52919351 + tRNA-Ser-TCG tRNA tRNA 1 85 0 1 1110 1027 231 90 22 chr11 68924783 68925106 -52918750 - Lx9 LINE L1 0 7644 7300 1 1110 209 281 198 25 chr11 68925169 68925366 -52918490 + L2 LINE L2 1585 1815 -1604 1 1110 592 319 73 29 chr11 68925372 68925707 -52918149 + MLT1A LTR MaLR 19 400 -8 1 1110 327 323 137 23 chr11 68925918 68926010 -52917846 + L2 LINE L2 2103 2221 -1198 1 1110 180 0 0 0 chr11 68926010 68926030 -52917826 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1110 327 323 137 23 chr11 68926030 68926244 -52917612 + L2 LINE L2 2222 2443 -976 1 1110 487 246 8 73 chr11 68926561 68926684 -52917172 - B1F SINE Alu -30 119 5 1 1110 366 23 0 0 chr11 68927562 68927605 -52916251 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1110 389 291 19 50 chr11 68927626 68927785 -52916071 + L1MC4 LINE L1 6789 6942 -1100 1 1110 587 266 40 6 chr11 68927853 68928027 -52915829 + ID_B1 SINE B4 2 181 -43 1 1110 226 362 28 9 chr11 68927935 68928041 -52915815 + PB1D10 SINE Alu 9 116 -1 1 1110 509 128 130 56 chr11 68928067 68928175 -52915681 - B1_Mur2 SINE Alu 0 149 34 1 1110 325 244 33 22 chr11 68928195 68928287 -52915569 - B1_Mur4 SINE Alu -20 130 38 1 1110 465 19 0 0 chr11 68928419 68928473 -52915383 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1110 560 258 39 0 chr11 68928483 68928611 -52915245 - ID_B1 SINE B4 -8 216 84 1 1110 251 237 0 17 chr11 68928905 68928965 -52914891 + GA-rich Low_complexity Low_complexity 3 61 0 1 1110 527 209 18 0 chr11 68929630 68929740 -52914116 - PB1D9 SINE Alu 0 120 9 1 1110 658 143 9 9 chr11 68929864 68929977 -52913879 + B1_Mus2 SINE Alu 35 147 0 1 1110 621 0 0 0 chr11 68930822 68930891 -52912965 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1 1110 643 14 0 0 chr11 68932294 68932366 -52911490 - tRNA-Gly-GGY tRNA tRNA -2 72 1 1 1110 237 54 0 98 chr11 68933196 68933237 -52910619 + U2 snRNA snRNA 1 37 -151 1 1110 303 238 150 0 chr11 68934265 68934345 -52909511 + PB1D7 SINE Alu 28 119 -1 1 1110 202 87 43 0 chr11 68934345 68934391 -52909465 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1110 209 346 0 0 chr11 68935561 68935639 -52908217 + CT-rich Low_complexity Low_complexity 3 80 0 1 1110 537 41 0 161 chr11 68936983 68937070 -52906786 - tRNA-Arg-AGA tRNA tRNA -3 73 1 1 1110 873 95 0 0 chr11 68937135 68937282 -52906574 + (GA)n Simple_repeat Simple_repeat 1 147 0 1 1110 700 24 0 0 chr11 68937742 68937824 -52906032 + tRNA-Leu-CTY tRNA tRNA 1 82 -3 1 1110 643 28 0 0 chr11 68938108 68938180 -52905676 - tRNA-Gln-CAG tRNA tRNA -3 72 1 1 1110 26 0 0 0 chr11 68938435 68938461 -52905395 + AT_rich Low_complexity Low_complexity 1 26 0 1 1110 675 14 0 0 chr11 68938676 68938750 -52905106 - tRNA-Lys-AAA tRNA tRNA -2 74 1 1 1110 908 106 41 34 chr11 68940302 68940448 -52903408 - B1_Mus1 SINE Alu 0 148 2 1 1110 204 333 51 13 chr11 68940638 68940717 -52903139 + MER91A DNA Tip100 113 194 -2 1 1110 222 336 91 16 chr11 68941786 68941907 -52901949 - L2b LINE L2 -10 3365 3236 1 1110 331 244 0 35 chr11 68942425 68942510 -52901346 + ID4_ SINE ID 1 82 -1 1 1110 270 240 180 40 chr11 68942654 68942754 -52901102 - PB1D10 SINE Alu 0 117 4 1 1110 256 339 0 0 chr11 68942847 68942912 -52900944 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 1 1110 211 226 0 19 chr11 68943754 68943808 -52900048 + CT-rich Low_complexity Low_complexity 4 56 0 1 1111 742 146 70 42 chr11 68943943 68944086 -52899770 - B1_Mur2 SINE Alu -1 148 2 1 1111 593 226 77 43 chr11 68944179 68944387 -52899469 - B3 SINE B2 -1 215 1 1 1111 835 65 24 0 chr11 68948889 68949013 -52894843 + B1_Mm SINE Alu 21 147 0 1 1111 369 185 0 0 chr11 68949580 68949645 -52894211 - ID4 SINE ID -1 82 18 1 1111 362 211 0 95 chr11 68949645 68949664 -52894192 - ID SINE ID -141 83 8 1 1111 343 91 29 43 chr11 68950069 68950138 -52893718 + CT-rich Low_complexity Low_complexity 4 71 0 1 1111 243 0 0 0 chr11 68950322 68950349 -52893507 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 1 1111 218 256 22 11 chr11 68950387 68950434 -52893422 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1111 792 177 0 20 chr11 68950434 68950584 -52893272 - B1_Mus2 SINE Alu 0 147 1 1 1111 218 256 22 11 chr11 68950584 68950627 -52893229 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 1 1111 641 230 20 13 chr11 68950627 68950777 -52893079 - RSINE1 SINE B4 -3 162 12 1 1111 802 138 123 25 chr11 68951114 68951277 -52892579 - B2_Mm2 SINE B2 -14 181 3 1 1111 561 240 7 58 chr11 68951315 68951470 -52892386 - B1_Mur1 SINE Alu -1 148 2 1 1111 259 300 0 0 chr11 68951492 68951552 -52892304 - ID4 SINE ID -3 80 21 1 1111 686 214 21 0 chr11 68951740 68951885 -52891971 - B1_Mur1 SINE Alu 0 149 2 1 1111 380 326 28 0 chr11 68952036 68952180 -52891676 - L1MC4 LINE L1 -559 7483 7336 1 1111 786 315 219 10 chr11 68952970 68953476 -52890380 - L2a LINE L2 -5 3421 2811 1 1111 252 120 0 0 chr11 68953477 68953527 -52890329 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1111 709 191 0 14 chr11 68953756 68953884 -52889972 + B1_Mur3 SINE Alu 11 138 -11 1 1111 306 0 0 0 chr11 68953884 68953918 -52889938 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1111 488 181 113 0 chr11 68953935 68954068 -52889788 + B1_Mur2 SINE Alu 2 149 0 1 1111 832 261 18 49 chr11 68954357 68954583 -52889273 - ID_B1 SINE B4 -4 220 2 1 1111 260 171 0 0 chr11 68954713 68954754 -52889102 - RSINE1 SINE B4 -100 65 25 1 1111 327 63 31 16 chr11 68954768 68954832 -52889024 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 1 1111 1157 61 0 7 chr11 68954832 68954981 -52888875 - B1_Mus1 SINE Alu 0 148 1 1 1111 356 328 42 0 chr11 68954985 68955104 -52888752 - PB1 SINE Alu -2 125 2 1 1111 203 229 49 0 chr11 68955902 68955963 -52887893 + (TTGGGG)n Simple_repeat Simple_repeat 6 69 0 1 1111 456 99 0 0 chr11 68956754 68956825 -52887031 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 1 1111 360 248 17 34 chr11 68957100 68957217 -52886639 - L2b LINE L2 -208 3167 3053 1 1111 241 239 0 0 chr11 68957653 68957724 -52886132 + T-rich Low_complexity Low_complexity 1 71 0 1 1111 566 209 82 0 chr11 68957724 68957858 -52885998 - B1F2 SINE Alu 0 149 5 1 1111 261 128 0 0 chr11 68957860 68957907 -52885949 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1111 742 189 141 0 chr11 68957917 68958071 -52885785 + B3 SINE B2 5 165 -51 1 1111 345 24 0 0 chr11 68958071 68958113 -52885743 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 1111 742 189 141 0 chr11 68958113 68958143 -52885713 + B3 SINE B2 166 214 -2 1 1111 400 320 0 0 chr11 68958163 68958260 -52885596 - PB1 SINE Alu -30 97 1 1 1111 243 0 0 0 chr11 68958262 68958289 -52885567 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1111 293 222 16 0 chr11 68958307 68958370 -52885486 - ID4_ SINE ID -17 66 3 1 1111 335 311 45 0 chr11 68958426 68958558 -52885298 - RSINE1 SINE B4 -17 148 11 1 1111 623 135 3 32 chr11 68958771 68958901 -52884955 + B1_Mus1 SINE Alu 1 120 0 1 1111 210 128 0 0 chr11 68958902 68958941 -52884915 + (TAAG)n Simple_repeat Simple_repeat 1 39 0 1 1111 752 129 35 28 chr11 68959189 68959332 -52884524 - B1_Mur2 SINE Alu -1 148 5 1 1111 283 258 21 43 chr11 68959370 68959463 -52884393 + B1F SINE Alu 59 149 0 1 1111 390 42 0 0 chr11 68959564 68959612 -52884244 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1111 184 346 76 9 chr11 68960003 68960108 -52883748 + MIR SINE MIR 102 213 -49 1 1111 685 204 21 21 chr11 68960452 68960597 -52883259 - B1_Mm SINE Alu -1 146 2 1 1111 189 139 0 0 chr11 68960614 68960657 -52883199 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 1111 618 245 28 7 chr11 68961320 68961487 -52882369 - ORR1D1 LTR MaLR 0 374 193 1 1111 465 122 0 0 chr11 68961495 68961569 -52882287 + (T)n Simple_repeat Simple_repeat 1 74 0 1 1111 1082 96 0 0 chr11 68961569 68961715 -52882141 - B1_Mus2 SINE Alu 0 147 2 1 1111 842 163 20 0 chr11 68961733 68961886 -52881970 - ORR1D1 LTR MaLR -210 164 9 1 1111 254 109 0 42 chr11 68962629 68962677 -52881179 + (ATGGTG)n Simple_repeat Simple_repeat 5 50 0 1 1111 231 242 88 0 chr11 68963374 68963465 -52880391 - B1F SINE Alu -20 129 31 1 1111 654 133 34 17 chr11 68963760 68963936 -52879920 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1111 314 115 16 0 chr11 68964884 68964945 -52878911 + (CAAA)n Simple_repeat Simple_repeat 4 65 0 1 1111 185 0 40 0 chr11 68965589 68965614 -52878242 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1111 712 174 14 68 chr11 68965614 68965762 -52878094 - B1_Mur4 SINE Alu -10 140 1 1 1111 558 0 0 0 chr11 68966448 68966510 -52877346 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1111 1530 17 0 0 chr11 68966530 68966707 -52877149 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 1 1111 815 115 54 0 chr11 68966722 68966852 -52877004 - B1_Mus1 SINE Alu -6 142 6 1 1111 495 244 118 56 chr11 68966900 68967078 -52876778 + B3A SINE B2 1 189 -6 1 1111 247 243 54 0 chr11 68967273 68967347 -52876509 - BC1_Mm scRNA scRNA -56 96 19 1 1111 367 318 55 36 chr11 68967358 68967584 -52876272 + L2a LINE L2 3174 3399 -27 1 1111 21 0 0 0 chr11 68968215 68968236 -52875620 + AT_rich Low_complexity Low_complexity 1 21 0 1 1111 441 275 24 53 chr11 68968507 68968676 -52875180 - RSINE1 SINE B4 0 165 2 1 1111 207 0 0 0 chr11 68968703 68968726 -52875130 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1111 741 179 20 52 chr11 68968745 68968898 -52874958 - B1_Mur1 SINE Alu 0 149 2 1 1111 916 214 20 0 chr11 68969208 68969404 -52874452 + B3 SINE B2 13 212 -4 1 1111 939 142 11 6 chr11 68969436 68969484 -52874372 + polypyrimidine Low_complexity Low_complexity 129 178 0 1 1111 1127 112 0 11 chr11 68969484 68969664 -52874192 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1111 939 142 11 6 chr11 68969664 68969792 -52874064 + polypyrimidine Low_complexity Low_complexity 1 128 0 1 1111 253 250 147 20 chr11 68969792 68969894 -52873962 - PB1D7 SINE Alu -5 115 1 1 1111 212 265 17 121 chr11 68969894 68969938 -52873918 - B4A SINE B4 -212 80 49 1 1111 212 270 32 0 chr11 68969907 68969970 -52873886 - ID4_ SINE ID -4 79 15 1 1111 669 204 61 0 chr11 68972859 68972991 -52870865 - B1_Mur2 SINE Alu -2 147 8 1 1111 584 242 8 8 chr11 68973006 68973131 -52870725 - RSINE1 SINE B4 -37 128 4 1 1111 813 114 0 0 chr11 68973135 68973258 -52870598 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1 1111 258 342 0 14 chr11 68973258 68973332 -52870524 - ID4_ SINE ID -5 78 6 1 1111 339 136 0 0 chr11 68973403 68973462 -52870394 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1111 432 0 0 0 chr11 68974503 68974551 -52869305 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1 1111 209 392 0 19 chr11 68974572 68974676 -52869180 + MIRb SINE MIR 99 200 -68 1 1111 189 0 0 0 chr11 68974928 68974949 -52868907 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1111 451 226 311 6 chr11 68974949 68975108 -52868748 - B3A SINE B2 -7 209 2 1 1111 414 0 0 0 chr11 68975445 68975491 -52868365 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1111 441 0 0 0 chr11 68975491 68975539 -52868317 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1111 387 258 62 0 chr11 68975638 68975735 -52868121 + PB1D10 SINE Alu 1 103 -14 1 1111 312 264 32 24 chr11 68978726 68978850 -52865006 + CT-rich Low_complexity Low_complexity 1 125 0 1 1111 528 301 0 0 chr11 68978850 68978983 -52864873 - B1_Mur1 SINE Alu -10 139 7 1 1111 214 194 0 31 chr11 68978996 68979060 -52864796 + CT-rich Low_complexity Low_complexity 1 62 0 1 1111 538 146 34 0 chr11 68979069 68979158 -52864698 - B1_Mus2 SINE Alu -7 140 49 1 1111 191 250 0 97 chr11 68979661 68979723 -52864133 - L3 LINE CR1 -2246 2243 2188 1 1111 800 144 118 18 chr11 68979916 68980086 -52863770 + B2_Mm2 SINE B2 1 187 -8 1 1111 274 107 18 18 chr11 68981322 68981379 -52862477 + (TGGGGG)n Simple_repeat Simple_repeat 4 60 0 1 1111 189 362 53 58 chr11 68981436 68981644 -52862212 - L2b LINE L2 -7 3368 3162 1 1111 275 266 0 0 chr11 68983913 68983977 -52859879 - RMER15 LTR ERVL -191 384 321 1 1111 233 150 0 62 chr11 68984309 68984373 -52859483 + G-rich Low_complexity Low_complexity 4 63 0 1 1111 1973 206 133 48 chr11 68984376 68984901 -52858955 + RMER15 LTR ERVL 6 575 0 1 1111 571 259 44 0 chr11 68984991 68985126 -52858730 + B3 SINE B2 70 210 -6 1 1111 21 0 0 0 chr11 68985151 68985172 -52858684 + GC_rich Low_complexity Low_complexity 1 21 0 1 1111 287 75 43 29 chr11 68985465 68985534 -52858322 + (TTTTTG)n Simple_repeat Simple_repeat 6 75 0 1 1111 395 264 15 101 chr11 68985662 68985860 -52857996 + B3A SINE B2 2 182 -16 1 1111 227 149 0 31 chr11 68986122 68986185 -52857671 - MIR SINE MIR -145 117 63 1 1111 213 39 0 0 chr11 68986224 68986250 -52857606 + (TGG)n Simple_repeat Simple_repeat 2 27 0 1 1111 3017 122 26 12 chr11 68987211 68987311 -52856545 - RLTR28 LTR ERVL -13 511 414 1 1111 2068 144 17 3 chr11 68987311 68987665 -52856191 + RLTR15 LTR ERVK 1 359 0 1 1111 3017 122 26 12 chr11 68987665 68988068 -52855788 - RLTR28 LTR ERVL -111 413 2 1 1111 2145 143 39 31 chr11 68988705 68989095 -52854761 - ORR1B1 LTR MaLR 0 394 2 1 1111 402 114 25 12 chr11 68989638 68989718 -52854138 + CT-rich Low_complexity Low_complexity 2 82 0 1 1111 436 243 9 38 chr11 68989743 68989866 -52853990 - B3 SINE B2 -76 119 1 1 1111 441 0 0 0 chr11 68990175 68990224 -52853632 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1111 360 148 17 25 chr11 68990226 68990344 -52853512 + (CAGAGA)n Simple_repeat Simple_repeat 1 117 0 1 1111 1016 165 56 65 chr11 68990638 68990852 -52853004 - B3 SINE B2 -3 213 2 1 1111 815 157 0 15 chr11 68992228 68992364 -52851492 + B2_Mm2 SINE B2 2 135 -60 1 1111 909 69 0 0 chr11 68992584 68992714 -52851142 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 1 1111 378 186 311 10 chr11 68992789 68992892 -52850964 + B1_Mur3 SINE Alu 5 138 -11 1 1111 213 178 0 0 chr11 68992921 68992966 -52850890 + GA-rich Low_complexity Low_complexity 1 45 0 1 1111 308 119 17 0 chr11 68993480 68993539 -52850317 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1111 616 234 48 121 chr11 68993679 68993848 -52850008 + B3A SINE B2 5 159 -34 1 1111 531 0 0 0 chr11 68993848 68993907 -52849949 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1111 311 277 44 137 chr11 68993907 68993942 -52849914 + B2_Mm1t SINE B2 160 190 -3 1 1111 1169 48 0 0 chr11 68993961 68994107 -52849749 + B1_Mus2 SINE Alu 2 147 0 1 1111 700 210 30 65 chr11 68994252 68994420 -52849436 - MTD LTR MaLR -232 187 26 1 1111 196 123 34 34 chr11 68994500 68994559 -52849297 + T-rich Low_complexity Low_complexity 2 60 0 1 1111 217 101 190 127 chr11 68994766 68994845 -52849011 + B3A SINE B2 1 84 -114 1 1111 192 314 43 0 chr11 68995512 68995582 -52848274 - L2c LINE L2 -55 3332 3260 1 1111 281 182 53 74 chr11 68995779 68995874 -52847982 - MLT1J1 LTR MaLR -284 160 68 1 1111 326 78 0 59 chr11 68996163 68996231 -52847625 + (T)n Simple_repeat Simple_repeat 1 64 0 1 1111 1562 42 0 0 chr11 68996243 68996435 -52847421 - B2_Mm1a SINE B2 -1 192 1 1 1111 625 207 47 89 chr11 68996437 68996628 -52847228 - B3A SINE B2 -3 195 13 1 1111 698 236 0 0 chr11 68996760 68996785 -52847071 - B1_Mur4 SINE Alu 0 150 126 1 1111 378 0 0 0 chr11 68996785 68996827 -52847029 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1111 698 236 0 0 chr11 68996827 68996949 -52846907 - B1_Mur4 SINE Alu -25 125 4 1 1111 279 79 0 0 chr11 68997007 68997045 -52846811 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 1 1111 232 260 41 0 chr11 68997072 68997145 -52846711 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 1 1111 477 288 61 61 chr11 68997154 68997335 -52846521 - B3A SINE B2 -16 182 2 1 1111 219 36 0 0 chr11 68997487 68997515 -52846341 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1111 237 362 30 15 chr11 68997556 68997688 -52846168 + Tigger8 DNA MER2_type 455 588 -78 1 1111 1486 52 16 0 chr11 68997737 68997928 -52845928 - B2_Mm2 SINE B2 0 195 2 1 1111 225 319 246 0 chr11 68997958 68998096 -52845760 - B3 SINE B2 -38 178 7 1 1111 216 0 0 0 chr11 68998466 68998490 -52845366 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1111 186 43 0 0 chr11 68999097 68999120 -52844736 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1111 681 218 0 20 chr11 69000989 69001139 -52842717 - B1_Mur3 SINE Alu -2 147 1 1 1111 1335 83 16 16 chr11 69001700 69001884 -52841972 + B2_Mm2 SINE B2 1 184 -11 2 1111 714 24 0 0 chr11 69001884 69001968 -52841888 + (GGAAA)n Simple_repeat Simple_repeat 3 86 0 3 1111 210 250 0 0 chr11 69002287 69002327 -52841529 + polypurine Low_complexity Low_complexity 6 45 0 4 1111 582 108 0 0 chr11 69003654 69003737 -52840119 + MTC LTR MaLR 314 396 0 5 1111 5714 151 107 21 chr11 69003736 69004882 -52838974 + MTC-int LTR MaLR 2 1245 -13 5 1111 1056 44 29 7 chr11 69004882 69005020 -52838836 + MTB LTR MaLR 260 400 0 6 1111 401 208 52 0 chr11 69005546 69005623 -52838233 + ID4_ SINE ID 3 83 0 7 1111 1070 123 55 16 chr11 69005633 69005815 -52838041 + B2_Mm2 SINE B2 1 189 -6 8 1111 1135 96 0 57 chr11 69005857 69006033 -52837823 + B2_Mm2 SINE B2 5 170 -25 9 1111 773 180 21 7 chr11 69006184 69006324 -52837532 - B1_Mur4 SINE Alu -7 143 2 1 1111 33 0 0 0 chr11 69006328 69006361 -52837495 + AT_rich Low_complexity Low_complexity 1 33 0 1 1111 367 240 10 20 chr11 69006559 69006661 -52837195 - MER5A1 DNA MER1_type -32 134 34 1 1111 13340 69 28 9 chr11 69006786 69009268 -52834588 + MusHAL1 LINE L1 100 2627 -726 1 1111 618 151 0 0 chr11 69009268 69009374 -52834482 + CT-rich Low_complexity Low_complexity 3 108 0 1 1111 643 276 208 30 chr11 69009385 69009688 -52834168 + MTC LTR MaLR 13 369 -52 5 1111 181 270 0 0 chr11 69009727 69009764 -52834092 - MIRc SINE MIR -148 120 84 1 1111 294 335 120 7 chr11 69010303 69010453 -52833403 - MER5A DNA MER1_type 0 189 23 1 1111 400 221 141 13 chr11 69011963 69012119 -52831737 + Lx8 LINE L1 7292 7467 -6 1 1111 230 210 48 0 chr11 69012680 69012742 -52831114 + C-rich Low_complexity Low_complexity 1 65 0 1 1111 1012 229 92 11 chr11 69012765 69013047 -52830809 - RMER15 LTR ERVL 0 575 271 1 1111 288 248 93 93 chr11 69013069 69013198 -52830658 - RMER15 LTR ERVL -445 130 2 1 1111 446 294 14 34 chr11 69013198 69013346 -52830510 - RMER15-int LTR ERVL -26 4973 4829 1 1111 284 264 0 0 chr11 69013356 69013409 -52830447 + B1_Mur4 SINE Alu 2 54 -96 2 1111 426 101 0 0 chr11 69013422 69013491 -52830365 + (AGGGGG)n Simple_repeat Simple_repeat 1 69 0 2 1111 599 171 0 0 chr11 69013499 69013604 -52830252 + B1_Mur4 SINE Alu 43 147 -3 2 1111 923 246 109 30 chr11 69013625 69013964 -52829892 - RMER15-int LTR ERVL -210 4789 4424 1 1111 734 158 21 21 chr11 69014287 69014429 -52829427 - B1_Mur4 SINE Alu 0 150 9 2 1111 325 191 15 154 chr11 69014324 69014454 -52829402 - MT2B LTR ERVL -337 264 153 2 1111 192 77 0 0 chr11 69014489 69014515 -52829341 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2 1111 457 323 92 37 chr11 69014711 69014938 -52828918 - RMER15-int LTR ERVL -2776 2223 1975 1 1111 1046 181 51 19 chr11 69014938 69015152 -52828704 + URR1B DNA MER1_type 1 221 -4 2 1111 457 323 92 37 chr11 69015152 69015326 -52828530 - RMER15-int LTR ERVL -3025 1974 1800 1 1111 723 272 88 75 chr11 69015567 69016035 -52827821 + RLTR11B LTR ERVK 4 481 -46 2 1111 286 314 33 25 chr11 69016204 69016325 -52827531 - MLT1H LTR MaLR -365 184 63 2 1111 647 129 76 17 chr11 69016550 69016668 -52827188 + RLTR16 LTR ERVK 1 125 -380 2 1111 446 279 50 45 chr11 69016668 69016867 -52826989 + RLTR16 LTR ERVK 232 431 -74 2 1111 495 293 0 74 chr11 69017135 69017154 -52826702 + ID_B1 SINE B4 75 224 0 2 1111 888 157 0 21 chr11 69017154 69017297 -52826559 + B1_Mur4 SINE Alu 11 150 0 3 1111 497 277 50 65 chr11 69017472 69017644 -52826212 + ORR1D-int LTR MaLR 15 180 -918 3 1111 1027 208 18 13 chr11 69017961 69018185 -52825671 - URR1B DNA MER1_type 0 225 1 3 1111 212 77 26 0 chr11 69018192 69018231 -52825625 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1111 530 227 0 0 chr11 69018386 69018496 -52825360 + MTC LTR MaLR 1 110 -311 3 1111 196 331 73 41 chr11 69018674 69018797 -52825059 + MIRb SINE MIR 64 190 -78 3 1111 735 260 7 0 chr11 69019885 69020031 -52823825 + RSINE1 SINE B4 3 149 -16 3 1111 655 288 29 0 chr11 69020143 69020348 -52823508 - MER2 DNA MER2_type -40 305 95 3 1111 1350 229 100 47 chr11 69020465 69020852 -52823004 + RLTR20A LTR ERVK 30 450 -91 3 1111 342 0 0 0 chr11 69020852 69020890 -52822966 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1111 1350 246 91 27 chr11 69020890 69020969 -52822887 + RLTR20A LTR ERVK 451 541 0 3 1111 1044 100 7 28 chr11 69021022 69021166 -52822690 + B1_Mus1 SINE Alu 2 142 -6 4 1111 369 0 0 0 chr11 69021167 69021208 -52822648 + (TAAAA)n Simple_repeat Simple_repeat 3 43 0 4 1111 903 37 0 0 chr11 69021630 69021739 -52822117 + B1_Mus2 SINE Alu 32 140 -7 4 1111 3805 196 70 24 chr11 69022485 69023413 -52820443 + MYSERV16_I-int LTR ERVK 1 1340 -1502 4 1111 3522 155 28 3 chr11 69023394 69024072 -52819784 + MYSERV16_I-int LTR ERVK 1049 1743 -583 4 1111 648 201 96 7 chr11 69024437 69024572 -52819284 - B1_Mur1 SINE Alu -1 148 2 4 1111 444 37 0 0 chr11 69024836 69024890 -52818966 + (CTTG)n Simple_repeat Simple_repeat 2 55 0 4 1111 211 223 48 217 chr11 69025980 69026008 -52817848 - B2_Mm2 SINE B2 -3 192 179 4 1111 186 43 0 0 chr11 69026008 69026031 -52817825 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 4 1111 874 186 0 7 chr11 69026031 69026172 -52817684 - B1_Mur4 SINE Alu -10 140 1 4 1111 398 223 48 217 chr11 69026172 69026308 -52817548 - B3A SINE B2 0 198 55 4 1111 357 113 0 0 chr11 69027874 69027927 -52815929 - RLTR15 LTR ERVK -306 53 1 4 1111 456 305 36 16 chr11 69028578 69028771 -52815085 + RLTR14-int LTR ERV1 3215 3411 -1906 5 1111 272 319 9 0 chr11 69029090 69029203 -52814653 + RLTR14-int LTR ERV1 3777 3890 -1427 5 1111 277 250 0 14 chr11 69029376 69029449 -52814407 + RLTR18-int LTR ERVK 4800 4871 -490 5 1111 930 264 43 26 chr11 69030140 69030444 -52813412 + RLTR18-int LTR ERVK 4916 5224 -137 5 1111 1158 65 0 0 chr11 69030576 69030714 -52813142 + B1_Mus2 SINE Alu 1 138 -9 5 1111 267 31 0 0 chr11 69030714 69030746 -52813110 + (CTAA)n Simple_repeat Simple_repeat 2 33 0 5 1111 262 42 20 41 chr11 69030925 69030974 -52812882 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 5 1111 1506 127 193 39 chr11 69031001 69031312 -52812544 + ORR1B2 LTR MaLR 1 359 -8 5 1111 189 195 0 0 chr11 69032837 69032878 -52810978 + GA-rich Low_complexity Low_complexity 3 43 0 5 1111 815 206 90 55 chr11 69033115 69033315 -52810541 + RMER5 LTR ERV1 15 221 -313 5 1111 1688 191 52 55 chr11 69033314 69033680 -52810176 + RMER5 LTR ERV1 170 534 0 5 1111 587 292 208 0 chr11 69033719 69033935 -52809921 + MER2 DNA MER2_type 84 344 -1 5 1111 1036 216 24 5 chr11 69033991 69034196 -52809660 - B3 SINE B2 -6 210 2 6 1111 668 213 41 28 chr11 69034229 69034374 -52809482 - B1_Mur1 SINE Alu -2 147 1 6 1111 200 331 91 38 chr11 69035417 69035549 -52808307 - MIR3 SINE MIR -19 189 51 6 1111 370 257 93 95 chr11 69036136 69036487 -52807369 + RLTR15 LTR ERVK 49 567 -1 6 1111 603 260 0 0 chr11 69038020 69038143 -52805713 + B1F2 SINE Alu 1 123 -26 6 1111 2660 161 57 55 chr11 69038650 69039175 -52804681 + RLTR12B LTR ERVK 3 528 0 6 1111 812 273 14 50 chr11 69039898 69040118 -52803738 - ID_B1 SINE B4 -10 214 3 6 1111 22 0 0 0 chr11 69040118 69040140 -52803716 + AT_rich Low_complexity Low_complexity 1 22 0 6 1111 1122 288 24 34 chr11 69040151 69040442 -52803414 + B4A SINE B4 5 292 0 6 1111 360 59 0 0 chr11 69041761 69041812 -52802044 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1111 426 20 0 0 chr11 69041812 69041863 -52801993 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1111 586 217 0 40 chr11 69042564 69042689 -52801167 + RSINE1 SINE B4 42 161 -4 7 1111 25 75 0 0 chr11 69042702 69042755 -52801101 + AT_rich Low_complexity Low_complexity 1 53 0 7 1111 329 286 0 0 chr11 69042969 69043039 -52800817 - RSINE1 SINE B4 -86 79 10 7 1111 261 310 42 0 chr11 69043070 69043141 -52800715 - L2a LINE L2 -5 3421 3348 7 1111 1193 75 0 0 chr11 69043379 69043526 -52800330 + B1_Mm SINE Alu 1 147 0 7 1111 262 323 167 0 chr11 69044105 69044201 -52799655 + MER45A DNA Tip100 67 178 0 7 1111 227 341 81 68 chr11 69044245 69044393 -52799463 + MER20B DNA MER1_type 21 170 -613 7 1111 268 267 0 74 chr11 69046854 69046935 -52796921 - B1F SINE Alu -1 148 74 7 1111 202 250 0 19 chr11 69046941 69046986 -52796870 + CT-rich Low_complexity Low_complexity 9 53 0 7 1111 465 19 0 0 chr11 69046986 69047040 -52796816 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1111 274 128 0 130 chr11 69047049 69047103 -52796753 - ID_B1 SINE B4 -51 173 127 8 1111 285 333 10 10 chr11 69048351 69048451 -52795405 - PB1D10 SINE Alu -16 101 2 8 1111 379 252 41 25 chr11 69048452 69048574 -52795282 + LTR89 LTR ERVL? 143 266 -613 8 1111 389 38 0 19 chr11 69048697 69048750 -52795106 + B1_Mus1 SINE Alu 2 53 -95 8 1111 295 194 0 56 chr11 69048698 69048769 -52795087 + ID_B1 SINE B4 84 150 -74 8 1111 206 353 0 56 chr11 69048823 69049003 -52794853 + C-rich Low_complexity Low_complexity 1 170 0 8 1111 1234 29 0 0 chr11 69050833 69050973 -52792883 + B1_Mus2 SINE Alu 2 141 -6 8 1111 834 211 95 26 chr11 69050992 69051182 -52792674 + B3 SINE B2 7 209 -7 8 1111 698 152 16 31 chr11 69051369 69051498 -52792358 + B1_Mur2 SINE Alu 21 147 -2 8 1111 358 237 94 52 chr11 69051498 69051530 -52792326 - B3 SINE B2 -7 191 165 9 1111 303 28 0 0 chr11 69051530 69051566 -52792290 + (TATG)n Simple_repeat Simple_repeat 1 36 0 9 1111 358 219 100 38 chr11 69051566 69051660 -52792196 - B3 SINE B2 -50 166 63 9 1111 1242 55 0 0 chr11 69051927 69052073 -52791783 + B1_Mm SINE Alu 1 146 -1 9 1111 393 321 35 18 chr11 69052093 69052207 -52791649 + PB1D10 SINE Alu 1 116 -1 9 1111 279 71 0 0 chr11 69052307 69052349 -52791507 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1111 750 191 7 41 chr11 69052447 69052581 -52791275 + B1_Mur2 SINE Alu 8 138 -11 9 1111 261 0 0 0 chr11 69052581 69052610 -52791246 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1111 750 191 7 41 chr11 69052610 69052622 -52791234 + B1_Mur2 SINE Alu 139 149 0 9 1111 384 286 135 38 chr11 69052791 69052976 -52790880 + B4A SINE B4 5 207 -85 9 1111 641 254 43 7 chr11 69052982 69053121 -52790735 + RSINE1 SINE B4 22 165 0 9 1111 521 210 0 7 chr11 69053122 69053266 -52790590 + (CA)n Simple_repeat Simple_repeat 2 144 0 9 1111 737 194 0 6 chr11 69053277 69053458 -52790398 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1111 291 250 16 0 chr11 69053561 69053581 -52790275 + B3A SINE B2 2 21 -177 1 1111 1226 130 6 0 chr11 69053581 69053758 -52790098 + B2_Mm1t SINE B2 1 178 -15 1 1111 717 97 0 0 chr11 69053758 69053861 -52789995 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 1 1111 291 250 16 0 chr11 69053861 69053903 -52789953 + B3A SINE B2 22 64 -134 1 1111 473 221 7 0 chr11 69053914 69054059 -52789797 + (TG)n Simple_repeat Simple_repeat 2 147 0 1 1111 23 33 0 0 chr11 69054066 69054096 -52789760 + AT_rich Low_complexity Low_complexity 1 30 0 1 1111 384 250 21 11 chr11 69054111 69054204 -52789652 + U6 snRNA snRNA 13 106 -1 1 1111 1305 220 129 19 chr11 69054205 69054494 -52789362 + Lx9 LINE L1 7181 7502 -142 1 1111 405 0 0 0 chr11 69054494 69054539 -52789317 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1111 1305 220 129 19 chr11 69054539 69054666 -52789190 + Lx9 LINE L1 7503 7642 -2 1 1111 263 256 33 11 chr11 69054740 69054831 -52789025 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 1111 997 280 0 0 chr11 69055090 69055308 -52788548 + ID_B1 SINE B4 6 223 -1 1 1111 2112 121 18 58 chr11 69055381 69055724 -52788132 - ORR1A4 LTR MaLR 0 329 1 1 1111 331 278 87 30 chr11 69055733 69055917 -52787939 + L1M5 LINE L1 5295 5504 -736 1 1111 693 257 62 84 chr11 69056073 69056246 -52787610 + MTEb LTR MaLR 3 174 -205 1 1111 1219 54 0 20 chr11 69056246 69056396 -52787460 + B1_Mus2 SINE Alu 1 147 0 1 1111 687 257 62 84 chr11 69056396 69056447 -52787409 + MTEb LTR MaLR 175 222 -157 1 1111 289 298 125 0 chr11 69056785 69056889 -52786967 - RSINE1 SINE B4 -13 152 36 1 1111 647 279 7 0 chr11 69056951 69057105 -52786751 - RSINE1 SINE B4 -8 157 3 1 1111 22 0 0 0 chr11 69057109 69057131 -52786725 + AT_rich Low_complexity Low_complexity 1 22 0 1 1111 363 44 0 0 chr11 69057388 69057433 -52786423 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 1111 1097 65 0 89 chr11 69057433 69057601 -52786255 - B2_Mm2 SINE B2 -42 153 1 1 1111 1194 42 0 7 chr11 69057665 69057809 -52786047 + B1_Mus1 SINE Alu 1 143 -5 1 1111 578 215 106 17 chr11 69057815 69058030 -52785826 - L1MB3 LINE L1 -36 6147 5886 1 1111 688 238 0 18 chr11 69058030 69058197 -52785659 - RSINE1 SINE B4 0 165 2 1 1111 344 285 200 46 chr11 69058197 69058270 -52785586 - L1MB3 LINE L1 -289 5885 5816 1 1111 707 135 38 102 chr11 69058293 69058450 -52785406 - B1_Mur3 SINE Alu 0 149 3 1 1111 407 298 42 7 chr11 69058578 69058720 -52785136 - Lx8 LINE L1 -155 7318 7172 1 1111 953 127 12 0 chr11 69058721 69058886 -52784970 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 1 1111 342 301 159 0 chr11 69058887 69059063 -52784793 - L1MB3 LINE L1 -368 5812 5609 1 1111 387 0 0 0 chr11 69059568 69059611 -52784245 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1111 201 94 0 0 chr11 69059736 69059768 -52784088 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1111 414 0 0 0 chr11 69059908 69059954 -52783902 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1111 369 102 12 0 chr11 69060826 69060888 -52782968 - B2_Mm2 SINE B2 -126 67 3 1 1111 720 310 97 4 chr11 69060888 69061157 -52782699 - Lx8 LINE L1 -227 7246 6953 1 1111 540 189 93 9 chr11 69061160 69061267 -52782589 + MT2A LTR ERVL 6 121 -412 1 1111 500 206 120 37 chr11 69061263 69061464 -52782392 + MT2A LTR ERVL 347 600 -1 1 1111 253 300 29 0 chr11 69061610 69061680 -52782176 + ID4 SINE ID 2 73 -10 1 1111 279 0 0 0 chr11 69061682 69061713 -52782143 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1111 244 278 129 94 chr11 69061792 69061963 -52781893 - B3A SINE B2 -20 178 2 1 1111 928 170 0 0 chr11 69062232 69062373 -52781483 - B1_Mur2 SINE Alu -7 142 2 1 1111 313 187 28 55 chr11 69062513 69062694 -52781162 + (TAA)n Simple_repeat Simple_repeat 2 177 0 1 1111 670 164 0 25 chr11 69062701 69062820 -52781036 - B1_Mur3 SINE Alu 0 149 34 1 1111 1125 58 7 0 chr11 69063021 69063159 -52780697 + B1_Mus1 SINE Alu 2 140 -8 1 1111 267 31 0 0 chr11 69063159 69063191 -52780665 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 1111 43 0 0 0 chr11 69063307 69063350 -52780506 + AT_rich Low_complexity Low_complexity 1 43 0 1 1111 2152 207 159 40 chr11 69063415 69064069 -52779787 - Lx8 LINE L1 -116 7357 6626 1 1111 844 158 0 0 chr11 69064115 69064248 -52779608 - B1_Mus2 SINE Alu 0 147 15 1 1111 607 260 214 102 chr11 69064286 69064600 -52779256 + MTD LTR MaLR 73 421 0 1 1111 689 216 131 28 chr11 69064610 69064786 -52779070 - B3A SINE B2 -4 194 1 1 1111 543 261 7 29 chr11 69064794 69064932 -52778924 - B1_Mur1 SINE Alu -9 140 6 1 1111 325 191 0 31 chr11 69065066 69065131 -52778725 + B2_Mm2 SINE B2 15 77 -118 1 1111 414 272 185 28 chr11 69065584 69065762 -52778094 + MLT1G3-int LTR MaLR 1279 1484 -5 1 1111 365 301 229 0 chr11 69065767 69065933 -52777923 + MLT1G3 LTR MaLR 1 204 -391 1 1111 1184 105 15 73 chr11 69066139 69066344 -52777512 - B2_Mm2 SINE B2 -1 194 2 1 1111 563 248 37 8 chr11 69066382 69066516 -52777340 - B1F SINE Alu -9 140 3 1 1111 686 211 0 15 chr11 69066592 69066722 -52777134 - RSINE1 SINE B4 -37 128 1 1 1111 207 152 0 0 chr11 69067246 69067292 -52776564 + C-rich Low_complexity Low_complexity 1 46 0 1 1111 736 247 5 60 chr11 69067444 69067629 -52776227 + B3A SINE B2 24 198 0 1 1111 1542 44 0 6 chr11 69067633 69067816 -52776040 + B2_Mm2 SINE B2 4 185 -10 1 1111 22 0 0 0 chr11 69067905 69067927 -52775929 + AT_rich Low_complexity Low_complexity 1 22 0 1 1111 982 130 0 14 chr11 69067933 69068081 -52775775 - B1_Mus1 SINE Alu 0 148 3 1 1111 1002 219 30 10 chr11 69068164 69068367 -52775489 - B3 SINE B2 -6 210 4 1 1111 348 380 23 23 chr11 69068691 69068909 -52774947 + RMER15 LTR ERVL 352 569 -6 1 1111 532 208 38 8 chr11 69069004 69069135 -52774721 + B1F SINE Alu 2 136 -13 1 1111 463 241 176 18 chr11 69069165 69069330 -52774526 + B3A SINE B2 6 196 -2 1 1111 565 289 28 7 chr11 69069478 69069621 -52774235 - RSINE1 SINE B4 -17 148 3 1 1111 186 43 0 0 chr11 69069675 69069698 -52774158 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1111 234 0 0 0 chr11 69069933 69069959 -52773897 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1111 361 284 186 15 chr11 69069959 69070163 -52773693 - L1MB4 LINE L1 -27 6153 5915 1 1111 212 136 0 43 chr11 69071524 69071570 -52772286 + T-rich Low_complexity Low_complexity 2 45 0 1 1111 245 267 38 38 chr11 69071786 69071891 -52771965 - Lx8 LINE L1 -2 7471 7367 1 1111 2427 251 59 3 chr11 69072041 69072618 -52771238 - Lx8 LINE L1 -312 7161 6553 1 1111 488 168 18 82 chr11 69073505 69073615 -52770241 + PB1D9 SINE Alu 3 105 -15 1 1111 1056 203 14 28 chr11 69073755 69073973 -52769883 + B3 SINE B2 2 216 0 1 1111 297 342 43 0 chr11 69074564 69074681 -52769175 - LTR45C LTR ERV1 -1 538 417 1 1112 559 266 97 0 chr11 69075181 69075246 -52768610 + ID SINE ID 3 82 -142 1 1112 323 330 39 0 chr11 69075246 69075349 -52768507 + PB1D10 SINE Alu 1 107 -10 1 1112 275 170 21 0 chr11 69075360 69075407 -52768449 - MER21-int LTR ERV1 -154 4037 3990 1 1112 853 237 96 0 chr11 69075407 69075584 -52768272 + B3 SINE B2 6 199 -17 1 1112 474 228 86 39 chr11 69075603 69075731 -52768125 - ID_B1 SINE B4 -4 220 87 1 1112 662 184 8 26 chr11 69075618 69075735 -52768121 - B1_Mur2 SINE Alu -33 116 2 1 1112 566 269 11 86 chr11 69076608 69076749 -52767107 + RSINE1 SINE B4 3 130 -35 1 1112 1208 72 0 32 chr11 69076749 69076935 -52766921 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1112 566 269 11 86 chr11 69076935 69076968 -52766888 + RSINE1 SINE B4 131 163 -2 1 1112 989 108 0 22 chr11 69076974 69077154 -52766702 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1112 413 250 67 15 chr11 69077232 69077366 -52766490 - B1F SINE Alu -7 142 2 1 1112 413 308 6 19 chr11 69077574 69077736 -52766120 - MER21-int LTR ERV1 -3881 310 151 1 1112 1766 168 104 23 chr11 69077742 69078126 -52765730 - MTD LTR MaLR 0 419 5 1 1112 408 276 86 36 chr11 69078240 69078379 -52765477 + ORR1E LTR MaLR 4 149 -210 1 1112 686 206 14 49 chr11 69078391 69078534 -52765322 - B1_Mur3 SINE Alu -10 139 2 1 1112 1268 34 0 0 chr11 69078768 69078915 -52764941 + B1_Mm SINE Alu 1 147 0 1 1112 306 132 0 0 chr11 69078915 69078968 -52764888 + (A)n Simple_repeat Simple_repeat 1 53 0 1 1112 21 0 0 0 chr11 69079233 69079254 -52764602 + AT_rich Low_complexity Low_complexity 1 21 0 1 1112 1225 180 0 25 chr11 69079268 69079467 -52764389 + B3 SINE B2 14 207 -9 1 1112 25 31 0 0 chr11 69079713 69079745 -52764111 + AT_rich Low_complexity Low_complexity 1 32 0 1 1112 231 252 54 88 chr11 69080193 69080341 -52763515 - L1MC LINE L1 -2383 5499 5357 1 1112 186 43 0 0 chr11 69080367 69080390 -52763466 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 1 1112 324 259 118 0 chr11 69080394 69080479 -52763377 - RSINE1 SINE B4 -67 98 4 1 1112 1339 88 16 16 chr11 69080486 69080670 -52763186 - B2_Mm2 SINE B2 -8 187 4 1 1112 418 219 82 10 chr11 69080692 69080789 -52763067 - PB1D9 SINE Alu -15 105 2 1 1112 186 118 0 0 chr11 69080896 69080930 -52762926 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1112 249 233 233 0 chr11 69083298 69083371 -52760485 - MER21B LTR ERV1 -109 754 665 1 1112 221 357 70 20 chr11 69083710 69083810 -52760046 + PB1D9 SINE Alu 2 106 -14 1 1112 206 105 26 0 chr11 69083811 69083849 -52760007 + (GGA)n Simple_repeat Simple_repeat 2 40 0 1 1112 413 314 23 17 chr11 69083931 69084106 -52759750 + Lx7 LINE L1 6221 6396 -1300 1 1112 686 176 237 24 chr11 69084148 69084317 -52759539 + B3 SINE B2 2 206 -10 1 1112 379 351 107 16 chr11 69084445 69084697 -52759159 - L1M5 LINE L1 -1930 4216 3942 1 1112 1384 306 115 19 chr11 69084873 69085449 -52758407 + Lx8 LINE L1 6017 6647 -826 1 1112 284 286 71 0 chr11 69085599 69085697 -52758159 + L1ME3 LINE L1 5842 5946 -216 1 1112 470 216 20 10 chr11 69085721 69085819 -52758037 + RSINE1 SINE B4 34 132 -33 2 1112 234 294 93 20 chr11 69086106 69086206 -52757650 + ID4 SINE ID 2 107 -45 2 1112 437 314 105 0 chr11 69086216 69086388 -52757468 + Lx7 LINE L1 7118 7307 -389 1 1112 252 173 47 47 chr11 69086418 69086503 -52757353 + T-rich Low_complexity Low_complexity 1 85 0 2 1112 210 143 48 0 chr11 69086592 69086634 -52757222 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2 1112 489 370 26 0 chr11 69086662 69086854 -52757002 + B3A SINE B2 2 198 0 2 1112 1105 158 57 33 chr11 69086862 69087072 -52756784 + B3 SINE B2 1 215 -1 2 1112 24 32 0 0 chr11 69087196 69087227 -52756629 + AT_rich Low_complexity Low_complexity 1 31 0 2 1112 431 215 273 35 chr11 69087227 69087425 -52756431 + B4A SINE B4 1 245 -47 2 1112 212 86 29 0 chr11 69087426 69087461 -52756395 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1112 624 155 10 0 chr11 69087472 69087569 -52756287 + B1_Mus2 SINE Alu 50 147 0 2 1112 22 0 0 0 chr11 69087750 69087772 -52756084 + AT_rich Low_complexity Low_complexity 1 22 0 2 1112 1205 36 0 0 chr11 69087776 69087913 -52755943 + B1_Mm SINE Alu 1 137 -10 2 1112 213 65 0 0 chr11 69087913 69087944 -52755912 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1112 234 293 0 0 chr11 69087957 69088015 -52755841 + L1M5 LINE L1 5610 5667 -457 2 1112 424 224 46 118 chr11 69088582 69088631 -52755225 + MT2B LTR ERVL 117 154 -447 2 1112 766 152 28 35 chr11 69088631 69088774 -52755082 + B1_Mus1 SINE Alu 1 142 -6 2 1112 245 247 134 12 chr11 69088819 69088901 -52754955 - MER34A LTR ERV1 -47 524 433 2 1112 781 245 34 0 chr11 69088957 69089165 -52754691 + B3 SINE B2 2 216 0 2 1112 329 234 54 45 chr11 69089393 69089505 -52754351 - MER34A LTR ERV1 -440 131 19 2 1112 751 172 8 0 chr11 69089628 69089756 -52754100 - ID_B1 SINE B4 -3 221 93 2 1112 309 355 97 63 chr11 69090448 69090767 -52753089 + ORR1E LTR MaLR 25 354 -5 2 1112 330 26 0 0 chr11 69091191 69091230 -52752626 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2 1112 721 179 7 50 chr11 69091231 69091372 -52752484 - B1_Mus2 SINE Alu -7 140 6 2 1112 352 304 51 25 chr11 69091271 69091389 -52752467 - B4 SINE B4 -98 194 74 2 1112 267 298 52 84 chr11 69091277 69091431 -52752425 - RLTR25B LTR ERVK -531 497 349 2 1112 1080 75 13 20 chr11 69091528 69091677 -52752179 + B1_Mus1 SINE Alu 1 148 0 2 1112 983 150 0 16 chr11 69091703 69091886 -52751970 + GA-rich Low_complexity Low_complexity 1 180 0 2 1112 182 250 0 22 chr11 69091896 69091941 -52751915 - L2 LINE L2 -954 2465 2422 2 1112 23 0 0 0 chr11 69092133 69092156 -52751700 + AT_rich Low_complexity Low_complexity 1 23 0 2 1112 25 65 0 0 chr11 69092225 69092271 -52751585 + AT_rich Low_complexity Low_complexity 1 46 0 2 1112 775 237 71 0 chr11 69092272 69092441 -52751415 - B3A SINE B2 -16 182 2 2 1112 315 152 0 0 chr11 69092678 69092724 -52751132 + Lx3_Mus LINE L1 49 94 -7634 2 1112 946 47 8 15 chr11 69092736 69092867 -52750989 + B2_Mm1a SINE B2 64 193 0 2 1112 219 298 0 31 chr11 69092891 69092988 -52750868 + C-rich Low_complexity Low_complexity 4 97 0 2 1112 4098 163 53 43 chr11 69092988 69094001 -52749855 + Lx3_Mus LINE L1 398 1425 -4455 2 1112 3497 159 77 6 chr11 69094002 69094506 -52749350 + RMER1B Other Other 385 920 -146 2 1112 216 0 0 0 chr11 69094506 69094530 -52749326 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1112 3497 159 77 6 chr11 69094530 69094659 -52749197 + RMER1B Other Other 921 1063 -3 2 1112 17061 162 72 115 chr11 69094726 69094795 -52749061 + Lx3_Mus LINE L1 1408 1472 -4408 2 1112 1264 47 0 0 chr11 69094795 69094943 -52748913 + B1_Mus1 SINE Alu 1 148 0 2 1112 17061 162 72 115 chr11 69094943 69095500 -52748356 + Lx3_Mus LINE L1 1473 2081 -3799 2 1112 396 0 0 0 chr11 69095500 69095544 -52748312 + (CCA)n Simple_repeat Simple_repeat 1 44 0 2 1112 17061 162 72 115 chr11 69095544 69096692 -52747164 + Lx3_Mus LINE L1 2082 3309 -2571 2 1112 1189 71 143 0 chr11 69096692 69096860 -52746996 + B2_Mm2 SINE B2 1 192 -3 2 1112 1219 21 0 21 chr11 69096862 69097007 -52746849 + B1_Mus2 SINE Alu 1 142 -5 2 1112 17061 162 72 115 chr11 69097007 69097189 -52746667 + Lx3_Mus LINE L1 3310 3456 -2424 2 1112 216 0 0 0 chr11 69097189 69097213 -52746643 + (TAG)n Simple_repeat Simple_repeat 2 25 0 2 1112 17061 162 72 115 chr11 69097213 69097276 -52746580 + Lx3_Mus LINE L1 3457 3501 -2379 2 1112 487 0 0 0 chr11 69097276 69097332 -52746524 + B1_Mur4 SINE Alu 85 140 -10 2 1112 891 0 0 0 chr11 69097332 69097431 -52746425 + (GAA)n Simple_repeat Simple_repeat 2 100 0 2 1112 17061 162 72 115 chr11 69097431 69097510 -52746346 + Lx3_Mus LINE L1 3502 3583 -2297 2 1112 523 30 0 0 chr11 69097510 69097576 -52746280 + B1_Mur4 SINE Alu 85 150 0 2 1112 17061 162 72 115 chr11 69097576 69098100 -52745756 + Lx3_Mus LINE L1 3584 4132 -1748 2 1112 483 143 376 7 chr11 69098100 69098241 -52745615 + B2_Mm2 SINE B2 2 194 -1 2 1112 17061 162 72 115 chr11 69098241 69098389 -52745467 + Lx3_Mus LINE L1 4133 4279 -1601 2 1112 1257 92 29 0 chr11 69098389 69098562 -52745294 + B2_Mm1t SINE B2 1 178 -15 2 1112 17061 162 72 115 chr11 69098562 69098595 -52745261 + Lx3_Mus LINE L1 4280 4311 -2698 2 1112 293 109 336 35 chr11 69098595 69098705 -52745151 + B2_Mm2 SINE B2 47 189 -6 2 1112 17061 162 72 115 chr11 69098705 69100197 -52743659 + Lx3_Mus LINE L1 4312 5789 -1220 2 1112 938 142 7 0 chr11 69100197 69100338 -52743518 + B1_Mur3 SINE Alu 2 143 -6 2 1112 17061 219 77 121 chr11 69100338 69100675 -52743181 + Lx3_Mus LINE L1 5784 6099 -910 2 1112 1097 250 66 28 chr11 69100672 69100989 -52742867 + Lx6 LINE L1 6963 7291 -169 2 1112 303 250 114 0 chr11 69101073 69101161 -52742695 + Lx7 LINE L1 7211 7308 -388 2 1112 294 29 0 0 chr11 69101165 69101200 -52742656 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1112 243 167 167 0 chr11 69101202 69101280 -52742576 + Lx8 LINE L1 7383 7473 0 2 1112 686 181 21 28 chr11 69101303 69101445 -52742411 + ID_B1 SINE B4 84 224 0 2 1112 291 319 66 71 chr11 69101499 69101725 -52742131 + Zaphod DNA Tip100 3631 3855 -176 2 1112 411 227 0 43 chr11 69101755 69101847 -52742009 - ID_B1 SINE B4 -2 222 135 2 1112 510 99 14 0 chr11 69101844 69101915 -52741941 + RLTR19 LTR ERVK 428 499 0 2 1112 1152 114 11 37 chr11 69102301 69102492 -52741364 + B2_Mm2 SINE B2 2 187 -8 2 1112 584 248 0 49 chr11 69102515 69102638 -52741218 + B3 SINE B2 1 117 -99 2 1112 666 203 0 59 chr11 69102664 69102816 -52741040 - B1_Mus2 SINE Alu 0 147 5 2 1112 309 318 34 0 chr11 69102887 69102975 -52740881 + ID_B1 SINE B4 76 166 -58 2 1112 295 219 47 0 chr11 69102977 69103041 -52740815 - ID_B1 SINE B4 -6 218 152 2 1112 351 293 146 7 chr11 69103062 69103213 -52740643 + ID_B1 SINE B4 49 220 -4 2 1112 337 326 111 0 chr11 69103221 69103356 -52740500 + RSINE1 SINE B4 2 151 -14 2 1112 26 0 0 0 chr11 69103526 69103552 -52740304 + AT_rich Low_complexity Low_complexity 1 26 0 2 1112 955 237 31 5 chr11 69103552 69103747 -52740109 + B3 SINE B2 16 215 -1 2 1112 612 200 0 0 chr11 69103797 69103902 -52739954 - B1_Mus1 SINE Alu -42 106 2 2 1112 942 73 72 7 chr11 69103969 69104107 -52739749 + B1_Mus1 SINE Alu 2 148 0 2 1112 268 24 49 0 chr11 69104109 69104150 -52739706 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1112 825 188 117 6 chr11 69104155 69104326 -52739530 + B3 SINE B2 27 216 0 2 1112 790 172 20 52 chr11 69104516 69104669 -52739187 + B1_Mur1 SINE Alu 1 148 -1 2 1112 285 264 54 54 chr11 69104900 69104992 -52738864 + MLT2D LTR ERVL 4 95 -319 2 1112 551 258 108 0 chr11 69105187 69105354 -52738502 - B3A SINE B2 -11 187 3 2 1112 250 255 20 0 chr11 69106111 69106162 -52737694 - B1F SINE Alu -97 52 1 2 1112 275 347 0 0 chr11 69106191 69106266 -52737590 - ID4 SINE ID 0 83 9 2 1112 624 230 40 40 chr11 69106278 69106487 -52737369 + B3A SINE B2 5 216 0 2 1112 307 186 141 14 chr11 69106496 69106567 -52737289 + ID4_ SINE ID 1 80 -3 2 1112 908 141 0 0 chr11 69106588 69106716 -52737140 + B1_Mus1 SINE Alu 4 131 -17 2 1112 1161 68 0 26 chr11 69106784 69106935 -52736921 - B1_Mus1 SINE Alu 0 148 2 2 1112 310 179 54 0 chr11 69106935 69106991 -52736865 + ID_B1 SINE B4 99 157 -67 2 1112 309 292 33 33 chr11 69106991 69107027 -52736829 + PB1D10 SINE Alu 18 109 -8 2 1112 443 253 123 0 chr11 69107276 69107422 -52736434 - RSINE1 SINE B4 0 165 2 2 1112 228 296 85 72 chr11 69107459 69107612 -52736244 - Tigger7 DNA MER2_type -180 2311 2157 2 1112 261 240 183 0 chr11 69107658 69107762 -52736094 + PB1 SINE Alu 1 123 -4 2 1112 369 313 0 20 chr11 69107783 69107884 -52735972 - Tigger7 DNA MER2_type -2388 103 5 2 1112 646 277 62 124 chr11 69107878 69108216 -52735640 + MLT1B LTR MaLR 69 385 -5 2 1112 369 298 99 79 chr11 69108857 69109160 -52734696 - L1M5 LINE L1 -542 5698 5390 2 1112 1043 173 36 67 chr11 69109307 69109530 -52734326 - B3 SINE B2 0 216 1 2 1112 315 146 0 0 chr11 69109633 69109681 -52734175 - B3A SINE B2 -148 50 3 2 1112 231 238 48 36 chr11 69109740 69109823 -52734033 + RSINE1 SINE B4 1 84 -81 2 1112 468 91 0 0 chr11 69109887 69109953 -52733903 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 2 1112 842 123 17 0 chr11 69109953 69110096 -52733760 - B1_Mus1 SINE Alu 0 148 1 2 1112 429 239 89 27 chr11 69110095 69110107 -52733749 - B2_Mm2 SINE B2 -39 156 145 2 1112 480 111 0 0 chr11 69110107 69110179 -52733677 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1112 560 181 174 3 chr11 69110179 69110312 -52733544 - B3A SINE B2 -51 144 2 2 1112 410 267 44 106 chr11 69110547 69110565 -52733291 - B4A SINE B4 -46 246 171 2 1112 861 135 0 14 chr11 69110565 69110708 -52733148 - B1_Mur2 SINE Alu 0 149 9 2 1112 410 267 44 106 chr11 69110708 69110727 -52733129 - B4A SINE B4 -46 170 78 2 1112 598 25 15 92 chr11 69111028 69111159 -52732697 + (ATGGTG)n Simple_repeat Simple_repeat 1 121 0 2 1112 468 234 145 0 chr11 69112289 69112413 -52731443 - B1F SINE Alu -7 142 1 2 1112 258 32 0 0 chr11 69112495 69112526 -52731330 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 2 1112 774 204 21 0 chr11 69112526 69112668 -52731188 - B1_Mm SINE Alu -2 145 1 2 1112 277 276 110 20 chr11 69112790 69112890 -52730966 + PB1D10 SINE Alu 2 110 -7 2 1112 258 265 68 8 chr11 69113031 69113149 -52730707 - L1ME4a LINE L1 -4 6120 5996 2 1112 493 155 14 5 chr11 69113908 69114004 -52729852 + B1_Mur3 SINE Alu 19 149 0 2 1112 504 144 36 0 chr11 69114006 69114117 -52729739 + GA-rich Low_complexity Low_complexity 4 118 0 3 1112 521 286 99 5 chr11 69114254 69114465 -52729391 + RCHARR1 DNA MER1_type 4 234 -740 3 1112 1096 72 0 14 chr11 69114489 69114630 -52729226 - B1_Mus1 SINE Alu -8 140 2 3 1112 481 211 108 36 chr11 69114865 69114932 -52728924 + RCHARR1 DNA MER1_type 346 411 -563 3 1112 449 300 131 67 chr11 69114932 69115006 -52728850 - B4A SINE B4 -7 285 223 3 1112 576 258 0 0 chr11 69115006 69115126 -52728730 - PB1D9 SINE Alu 0 120 1 3 1112 449 300 131 67 chr11 69115126 69115319 -52728537 - B4A SINE B4 -70 222 1 3 1112 481 211 108 36 chr11 69115319 69115418 -52728438 + RCHARR1 DNA MER1_type 412 524 -450 3 1112 215 31 31 0 chr11 69115420 69115452 -52728404 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1112 465 183 101 34 chr11 69115458 69115577 -52728279 + B1_Mur1 SINE Alu 23 149 0 3 1112 27 29 0 0 chr11 69115995 69116029 -52727827 + AT_rich Low_complexity Low_complexity 1 34 0 3 1112 373 333 16 24 chr11 69116841 69116876 -52726980 + ID SINE ID 49 82 -142 3 1112 279 343 39 0 chr11 69116876 69116978 -52726878 + PB1D10 SINE Alu 1 106 -11 3 1112 216 0 0 0 chr11 69117095 69117119 -52726737 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 1112 1162 70 0 0 chr11 69117120 69117262 -52726594 - B1_Mus1 SINE Alu -6 142 1 3 1112 415 311 75 8 chr11 69117388 69117521 -52726335 + B1F SINE Alu 2 143 -6 3 1112 649 247 48 151 chr11 69118004 69118085 -52725771 + B4A SINE B4 3 85 -207 3 1112 770 176 49 7 chr11 69118085 69118228 -52725628 + B1_Mur1 SINE Alu 1 149 0 3 1112 649 247 48 151 chr11 69118228 69118418 -52725438 + B4A SINE B4 86 246 -46 3 1112 585 165 0 0 chr11 69118441 69118532 -52725324 + 4.5SRNA scRNA scRNA 1 91 -3 3 1112 1709 113 73 4 chr11 69118532 69118807 -52725049 + Lx2 LINE L1 6704 6997 0 3 1112 468 0 0 0 chr11 69118907 69118959 -52724897 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1112 1218 162 39 10 chr11 69119245 69119451 -52724405 + B3 SINE B2 1 212 -4 3 1112 392 263 146 0 chr11 69119555 69119692 -52724164 + ID_B1 SINE B4 1 157 -67 3 1112 393 344 84 26 chr11 69119727 69119882 -52723974 + RSINE1 SINE B4 2 165 0 3 1112 230 154 0 25 chr11 69119958 69119998 -52723858 - B4A SINE B4 -67 225 187 3 1112 1126 149 25 15 chr11 69120037 69120241 -52723615 + ORR1B2 LTR MaLR 3 208 -159 3 1112 487 262 13 72 chr11 69120185 69120337 -52723519 - MT2B LTR ERVL -458 143 1 3 1112 295 296 22 10 chr11 69120368 69120481 -52723375 - B4A SINE B4 -175 117 3 3 1112 323 282 26 0 chr11 69120496 69120574 -52723282 - ID4_ SINE ID -1 82 3 3 1112 229 187 79 13 chr11 69120574 69120650 -52723206 - ID_B1 SINE B4 -66 158 78 3 1112 232 233 0 32 chr11 69120660 69120722 -52723134 - ID_B1 SINE B4 0 224 165 3 1112 358 266 183 21 chr11 69120788 69120930 -52722926 - ID_B1 SINE B4 -48 176 12 3 1112 242 116 23 0 chr11 69122364 69122407 -52721449 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1112 475 311 103 20 chr11 69122464 69122667 -52721189 - ID_B1 SINE B4 -3 221 2 3 1112 611 283 154 8 chr11 69123029 69123275 -52720581 + B4A SINE B4 1 282 -10 3 1112 535 243 209 33 chr11 69123659 69123812 -52720044 + B3A SINE B2 1 180 -18 3 1112 441 237 51 19 chr11 69124173 69124278 -52719578 - PB1D10 SINE Alu -1 116 12 3 1112 706 149 8 26 chr11 69124314 69124431 -52719425 + PB1D9 SINE Alu 3 117 -3 3 1112 279 0 0 0 chr11 69124445 69124476 -52719380 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1112 416 189 92 28 chr11 69125680 69125789 -52718067 + PB1D10 SINE Alu 1 116 -1 3 1112 782 198 215 0 chr11 69125792 69125969 -52717887 + B3 SINE B2 1 215 -1 3 1112 1322 69 11 28 chr11 69125989 69126169 -52717687 + B2_Mm1t SINE B2 1 177 -16 3 1112 244 127 411 17 chr11 69126217 69126324 -52717532 + B2_Mm2 SINE B2 47 195 0 3 1112 625 293 81 28 chr11 69126694 69126905 -52716951 + MER58A DNA MER1_type 1 222 -2 3 1112 908 199 0 12 chr11 69127122 69127285 -52716571 - B3 SINE B2 -54 162 2 3 1112 322 240 0 13 chr11 69127294 69127370 -52716486 - ID4_ SINE ID 0 83 9 3 1112 522 243 20 53 chr11 69127379 69127531 -52716325 - B1F1 SINE Alu -2 147 1 3 1112 461 273 171 7 chr11 69127691 69127831 -52716025 + RSINE1 SINE B4 3 165 0 3 1112 773 278 76 89 chr11 69129087 69129232 -52714624 + Lx8 LINE L1 6659 6807 -666 3 1112 1199 200 24 0 chr11 69129232 69129442 -52714414 + B3 SINE B2 2 216 0 3 1112 773 278 76 89 chr11 69129442 69129679 -52714177 + Lx8 LINE L1 6808 7036 -437 3 1112 357 350 0 11 chr11 69129679 69129989 -52713867 + GA-rich Low_complexity Low_complexity 1 306 0 3 1112 379 270 43 21 chr11 69130019 69130159 -52713697 + Lx8 LINE L1 6990 7132 -341 3 1112 735 103 0 0 chr11 69130516 69130623 -52713233 + B2_Mm2 SINE B2 1 107 -88 3 1112 792 177 57 0 chr11 69130800 69130941 -52712915 - B1_Mur2 SINE Alu 0 149 1 3 1112 401 224 102 0 chr11 69131046 69131144 -52712712 - PB1D10 SINE Alu -7 110 3 3 1112 346 221 131 28 chr11 69131169 69131276 -52712580 + MIRb SINE MIR 133 250 -18 3 1112 237 267 0 77 chr11 69131622 69131687 -52712169 + ID4 SINE ID 1 60 -23 3 1112 1352 93 11 0 chr11 69131704 69131886 -52711970 + B2_Mm1t SINE B2 2 185 -8 3 1112 490 208 27 44 chr11 69131892 69132041 -52711815 - PB1D9 SINE Alu -7 143 3 3 1112 269 323 0 40 chr11 69131954 69132054 -52711802 - B4A SINE B4 -122 170 75 3 1112 1288 102 11 16 chr11 69132054 69132244 -52711612 - B2_Mm2 SINE B2 -2 193 5 3 1112 309 274 11 35 chr11 69133177 69133264 -52710592 + ID_B1 SINE B4 70 154 -70 3 1112 368 244 24 0 chr11 69133192 69133284 -52710572 + PB1D7 SINE Alu 5 106 -14 3 1112 1065 121 109 0 chr11 69135062 69135090 -52708766 - B2_Mm2 SINE B2 -1 194 159 3 1112 276 30 0 0 chr11 69135090 69135123 -52708733 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 1112 1065 121 109 0 chr11 69135123 69135268 -52708588 - B2_Mm2 SINE B2 -37 158 3 3 1112 345 268 56 24 chr11 69135576 69135702 -52708154 - MER102c DNA MER1_type -9 322 193 3 1112 546 231 127 44 chr11 69138659 69138840 -52705016 - B3A SINE B2 -1 197 2 3 1112 261 284 209 49 chr11 69139408 69139571 -52704285 - MER20 DNA MER1_type -30 189 1 3 1112 262 280 88 11 chr11 69142416 69142514 -52701342 + L2c LINE L2 3071 3175 -212 3 1112 429 280 9 9 chr11 69142822 69142930 -52700926 + PB1D10 SINE Alu 2 109 -8 3 1112 270 0 0 0 chr11 69144332 69144362 -52699494 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1112 422 119 12 0 chr11 69144362 69144445 -52699411 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1112 620 250 54 0 chr11 69146866 69147014 -52696842 - RSINE1 SINE B4 0 165 10 3 1112 685 254 82 22 chr11 69147030 69147241 -52696615 - B3 SINE B2 -3 213 6 3 1112 358 219 23 25 chr11 69147250 69147401 -52696455 - B3 SINE B2 -5 211 20 3 1112 212 59 29 0 chr11 69147423 69147457 -52696399 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1112 849 101 110 37 chr11 69147458 69147622 -52696234 - B2_Mm2 SINE B2 -5 190 15 3 1112 331 353 53 29 chr11 69148143 69148350 -52695506 - MARNA DNA Mariner -13 573 362 3 1112 279 244 75 25 chr11 69148685 69148765 -52695091 - ORR1E LTR MaLR 0 359 276 3 1112 251 292 68 68 chr11 69148831 69148978 -52694878 - ORR1E LTR MaLR -212 147 1 3 1112 265 97 16 31 chr11 69149138 69149202 -52694654 + (TTTTTG)n Simple_repeat Simple_repeat 1 63 0 3 1112 915 34 0 8 chr11 69149202 69149322 -52694534 - B1_Mm SINE Alu 0 147 29 3 1112 494 269 85 28 chr11 69149342 69149518 -52694338 + B3A SINE B2 2 187 -11 3 1112 233 292 66 101 chr11 69150246 69150444 -52693412 - MLT1H LTR MaLR -255 294 104 3 1112 1351 102 37 0 chr11 69151027 69151214 -52692642 - B2_Mm2 SINE B2 0 195 2 3 1112 220 360 45 67 chr11 69151265 69151399 -52692457 + B4A SINE B4 21 151 -141 3 1112 623 193 26 17 chr11 69151477 69151593 -52692263 + PB1D9 SINE Alu 3 119 -1 3 1112 781 242 30 0 chr11 69151773 69151938 -52691918 - B3A SINE B2 -28 170 1 3 1112 352 264 156 24 chr11 69151938 69152094 -52691762 + MARNA DNA Mariner 370 547 -39 3 1112 507 254 21 5 chr11 69152083 69152227 -52691629 + ID_B1 SINE B4 67 206 -18 3 1112 441 272 17 87 chr11 69152232 69152405 -52691451 + B3A SINE B2 38 198 0 3 1112 461 255 0 0 chr11 69152449 69152543 -52691313 + B1F SINE Alu 23 116 -33 3 1112 669 234 14 7 chr11 69152557 69152703 -52691153 + B1_Mur1 SINE Alu 2 148 -1 3 1112 472 303 112 29 chr11 69152903 69153073 -52690783 - MIRb SINE MIR -1 267 84 3 1112 273 278 147 9 chr11 69155520 69155629 -52688227 + MER5A1 DNA MER1_type 27 150 -16 3 1112 1269 47 0 0 chr11 69156496 69156644 -52687212 + B1_Mus1 SINE Alu 1 148 0 3 1112 533 246 17 0 chr11 69158246 69158364 -52685492 - PB1D9 SINE Alu 0 120 1 3 1112 251 249 45 39 chr11 69158366 69158467 -52685389 - PB1D7 SINE Alu -2 118 16 3 1112 1922 149 58 8 chr11 69160834 69161199 -52682657 + MTC LTR MaLR 32 414 -7 3 1112 672 278 23 0 chr11 69161479 69161655 -52682201 + B3 SINE B2 31 210 -6 3 1112 237 260 13 52 chr11 69162812 69162889 -52680967 + MLT1A LTR MaLR 1 74 -334 3 1112 322 346 89 46 chr11 69162923 69163205 -52680651 + MLT1A LTR MaLR 76 369 -5 3 1112 387 41 0 0 chr11 69164921 69164970 -52678886 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1112 333 0 0 0 chr11 69164970 69165006 -52678850 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1112 1063 172 124 10 chr11 69165325 69165519 -52678337 + B3 SINE B2 1 216 0 3 1112 290 320 62 39 chr11 69168200 69168330 -52675526 + Charlie4z DNA MER1_type 15 147 -20 3 1112 378 151 110 3 chr11 69168407 69168504 -52675352 - B1_Mur1 SINE Alu 0 149 2 4 1112 327 225 262 126 chr11 69168504 69168590 -52675266 - ID_B1 SINE B4 -1 223 16 4 1112 624 148 139 0 chr11 69169335 69169450 -52674406 - B1_Mus1 SINE Alu -2 146 16 4 1112 1249 41 0 0 chr11 69169452 69169598 -52674258 + B1_Mm SINE Alu 2 147 0 4 1112 180 0 0 0 chr11 69169993 69170013 -52673843 + (CCCCG)n Simple_repeat Simple_repeat 1 20 0 4 1112 514 267 17 0 chr11 69172015 69172135 -52671721 - RSINE1 SINE B4 -41 124 3 4 1112 366 80 0 0 chr11 69172263 69172313 -52671543 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 4 1112 598 284 65 10 chr11 69172315 69172485 -52671371 - B3A SINE B2 -18 177 6 4 1112 330 204 0 0 chr11 69174191 69174279 -52669577 + CT-rich Low_complexity Low_complexity 3 90 0 4 1112 198 103 0 0 chr11 69175677 69175706 -52668150 + (CTG)n Simple_repeat Simple_repeat 3 31 0 4 1112 21 0 0 0 chr11 69175943 69175964 -52667892 + AT_rich Low_complexity Low_complexity 1 21 0 4 1112 214 302 38 12 chr11 69176264 69176380 -52667476 - MIR SINE MIR -56 212 83 4 1112 1010 174 37 26 chr11 69176560 69176749 -52667107 + B2_Mm2 SINE B2 1 191 -4 4 1112 427 275 35 29 chr11 69177657 69177829 -52666027 - MIR SINE MIR 0 262 90 4 1112 225 0 0 0 chr11 69179165 69179190 -52664666 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1112 345 82 0 0 chr11 69182415 69182464 -52661392 + (CGG)n Simple_repeat Simple_repeat 3 51 0 4 1112 267 79 0 0 chr11 69182639 69182677 -52661179 + (CGG)n Simple_repeat Simple_repeat 2 39 0 4 1112 477 180 0 0 chr11 69182748 69182876 -52660980 + CT-rich Low_complexity Low_complexity 1 128 0 4 1112 220 164 0 35 chr11 69182906 69182963 -52660893 + C-rich Low_complexity Low_complexity 5 59 0 4 1112 372 104 0 0 chr11 69182964 69183031 -52660825 + (TCC)n Simple_repeat Simple_repeat 2 68 0 4 1112 28 29 0 0 chr11 69183203 69183238 -52660618 + AT_rich Low_complexity Low_complexity 1 35 0 4 1112 297 0 0 0 chr11 69183579 69183612 -52660244 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1112 288 0 0 0 chr11 69183612 69183643 -52660213 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1112 398 323 24 0 chr11 69185581 69185748 -52658108 + (CCTG)n Simple_repeat Simple_repeat 2 172 0 4 1112 795 237 68 0 chr11 69186356 69186546 -52657310 + B3 SINE B2 10 212 -4 4 1112 681 225 148 0 chr11 69186546 69186728 -52657128 + B3 SINE B2 1 209 -7 4 1112 628 48 0 0 chr11 69188135 69188219 -52655637 - L1Md_T LINE L1 0 6582 6499 4 1112 1157 68 0 7 chr11 69188431 69188579 -52655277 + B1_Mus2 SINE Alu 1 147 0 4 1112 325 298 127 44 chr11 69188584 69188636 -52655220 + RLTR31A_Mm LTR ERVK 96 143 -410 4 1112 2156 96 79 18 chr11 69188636 69188977 -52654879 + Lx LINE L1 6293 6654 0 4 1112 967 124 33 11 chr11 69188977 69189157 -52654699 + RLTR31A_Mm LTR ERVK 120 303 -281 4 1112 603 332 78 4 chr11 69189328 69189573 -52654283 + B4A SINE B4 27 289 -3 4 1112 663 289 14 19 chr11 69189718 69189930 -52653926 + B3 SINE B2 2 212 -4 4 1112 971 258 9 9 chr11 69190021 69190236 -52653620 + B3 SINE B2 1 215 -1 4 1112 689 242 13 32 chr11 69190296 69190454 -52653402 - RSINE1 SINE B4 0 165 11 4 1112 510 289 75 50 chr11 69190794 69190954 -52652902 + RSINE1 SINE B4 2 165 0 4 1112 396 40 0 0 chr11 69191584 69191634 -52652222 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1112 592 192 56 0 chr11 69191634 69191759 -52652097 - B3A SINE B2 -44 154 23 4 1112 1105 58 0 13 chr11 69191772 69191929 -52651927 + B2_Mm2 SINE B2 25 179 -16 4 1112 1193 68 0 0 chr11 69192027 69192175 -52651681 + B1_Mus1 SINE Alu 1 148 0 4 1112 29 0 0 0 chr11 69192259 69192288 -52651568 + AT_rich Low_complexity Low_complexity 1 29 0 4 1112 26 64 0 0 chr11 69192313 69192360 -52651496 + AT_rich Low_complexity Low_complexity 1 47 0 4 1112 709 252 0 0 chr11 69192368 69192511 -52651345 + B1_Mur1 SINE Alu 1 143 -6 4 1112 1110 43 65 0 chr11 69192759 69192897 -52650959 - B1_Mus1 SINE Alu 0 148 2 4 1112 390 310 41 41 chr11 69192918 69193039 -52650817 + RSINE1 SINE B4 45 165 0 4 1112 263 28 28 0 chr11 69193045 69193081 -52650775 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1112 265 181 0 122 chr11 69193084 69193166 -52650690 + RLTR25B LTR ERVK 427 498 -530 4 1112 540 51 114 0 chr11 69193112 69193191 -52650665 + B1_Mus2 SINE Alu 45 132 -15 4 1112 183 129 0 0 chr11 69193611 69193642 -52650214 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 4 1112 498 248 8 42 chr11 69193642 69193760 -52650096 - PB1D9 SINE Alu -6 114 1 4 1112 262 331 89 7 chr11 69194041 69194175 -52649681 - MIR SINE MIR -75 187 53 4 1112 351 0 0 0 chr11 69194317 69194356 -52649500 + (CCA)n Simple_repeat Simple_repeat 2 40 0 4 1112 246 128 0 0 chr11 69194566 69194605 -52649251 + (TCC)n Simple_repeat Simple_repeat 3 41 0 4 1112 26 0 0 0 chr11 69194675 69194701 -52649155 + AT_rich Low_complexity Low_complexity 1 26 0 4 1112 189 0 0 0 chr11 69195597 69195618 -52648238 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1112 197 238 0 60 chr11 69196464 69196531 -52647325 + L2 LINE L2 2526 2588 -831 4 1112 297 250 58 101 chr11 69196675 69196710 -52647146 + MT2B LTR ERVL 132 160 -441 4 1112 573 174 12 158 chr11 69196710 69196881 -52646975 + B1_Mur1 SINE Alu 3 148 -1 4 1112 204 125 0 0 chr11 69196992 69197024 -52646832 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 4 1112 21 0 0 0 chr11 69197028 69197049 -52646807 + AT_rich Low_complexity Low_complexity 1 21 0 4 1112 429 241 29 147 chr11 69197049 69197071 -52646785 + B4 SINE B4 77 224 -66 4 1112 859 119 7 20 chr11 69197071 69197217 -52646639 + B1_Mur4 SINE Alu 6 149 -1 4 1112 561 258 33 13 chr11 69197778 69197860 -52645996 + ID SINE ID 2 86 -138 4 1112 244 325 111 0 chr11 69197860 69197986 -52645870 + B1F2 SINE Alu 1 140 -9 4 1112 294 226 0 0 chr11 69198061 69198114 -52645742 + B1_Mus2 SINE Alu 2 54 -93 4 1112 1121 89 7 0 chr11 69198114 69198260 -52645596 + B1_Mus1 SINE Alu 2 148 0 4 1112 589 296 119 14 chr11 69198387 69198606 -52645250 + B4A SINE B4 9 250 -42 4 1112 228 191 175 0 chr11 69198620 69198683 -52645173 + B3 SINE B2 84 157 -59 4 1112 557 170 14 39 chr11 69198649 69198781 -52645075 - B3 SINE B2 -67 131 1 4 1112 180 0 0 0 chr11 69198913 69198933 -52644923 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1112 1950 126 137 6 chr11 69198933 69199283 -52644573 - RMER10B LTR ERVL -2 396 1 4 1112 457 116 71 2 chr11 69199297 69199391 -52644465 - PB1D9 SINE Alu -21 127 7 4 1112 1566 179 124 44 chr11 69199425 69199711 -52644145 + ORR1B2 LTR MaLR 1 316 -51 4 1112 1179 78 156 0 chr11 69199711 69199878 -52643978 + B2_Mm2 SINE B2 3 195 0 4 1112 1566 179 124 44 chr11 69199878 69199930 -52643926 + ORR1B2 LTR MaLR 317 366 -1 4 1112 479 216 39 0 chr11 69199961 69200063 -52643793 - ID_B1 SINE B4 -2 222 117 4 1112 322 348 0 25 chr11 69200152 69200270 -52643586 + MLT1G1 LTR MaLR 201 315 -264 4 1112 304 247 12 12 chr11 69200282 69200364 -52643492 + ID4 SINE ID 2 83 0 4 1112 346 186 0 9 chr11 69200602 69200721 -52643135 - B2_Mm2 SINE B2 0 195 47 4 1112 2165 92 3 0 chr11 69200794 69201099 -52642757 + ORR1A2 LTR MaLR 22 327 0 4 1112 977 214 20 0 chr11 69201247 69201448 -52642408 - B3 SINE B2 -6 210 6 4 1112 1256 48 0 0 chr11 69202016 69202163 -52641693 + B1_Mm SINE Alu 1 147 0 4 1112 1230 123 32 0 chr11 69202239 69202426 -52641430 + B2_Mm2 SINE B2 3 195 0 4 1112 21 0 0 0 chr11 69202538 69202559 -52641297 + AT_rich Low_complexity Low_complexity 1 21 0 4 1112 934 203 285 7 chr11 69203107 69203405 -52640451 + MTD LTR MaLR 1 381 -38 4 1112 479 257 19 0 chr11 69203411 69203516 -52640340 + PB1D10 SINE Alu 3 109 -8 4 1112 281 136 0 0 chr11 69203838 69203882 -52639974 - B2_Mm2 SINE B2 -151 44 1 4 1112 1199 54 0 26 chr11 69204136 69204288 -52639568 - B1_Mus1 SINE Alu 0 148 1 4 1112 324 278 113 0 chr11 69204450 69204547 -52639309 - L2c LINE L2 -2 3385 3278 4 1112 1209 68 0 0 chr11 69204611 69204759 -52639097 - B1_Mus1 SINE Alu 0 148 1 4 1112 848 115 64 14 chr11 69205755 69205896 -52637960 - B1_Mur3 SINE Alu 0 149 2 4 1113 195 309 138 54 chr11 69206453 69206583 -52637273 + MIRb SINE MIR 17 157 -111 4 1113 1553 72 0 0 chr11 69207526 69207719 -52636137 + B2_Mm1a SINE B2 1 193 0 4 1113 25 0 0 0 chr11 69210737 69210762 -52633094 + AT_rich Low_complexity Low_complexity 1 25 0 4 1113 252 0 0 0 chr11 69212282 69212310 -52631546 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1113 29 28 0 0 chr11 69212368 69212404 -52631452 + AT_rich Low_complexity Low_complexity 1 36 0 4 1113 261 0 0 0 chr11 69212833 69212862 -52630994 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1113 34 0 0 0 chr11 69212956 69212990 -52630866 + GC_rich Low_complexity Low_complexity 1 34 0 4 1113 23 54 0 0 chr11 69213153 69213190 -52630666 + AT_rich Low_complexity Low_complexity 1 37 0 4 1113 783 124 83 55 chr11 69216257 69216402 -52627454 - B1_Mur4 SINE Alu 0 150 2 4 1113 272 49 49 0 chr11 69216413 69216454 -52627402 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 4 1113 676 123 9 0 chr11 69216533 69216639 -52627217 - B2_Mm2 SINE B2 -88 107 1 4 1113 1221 74 0 0 chr11 69216675 69216823 -52627033 + B1_Mus1 SINE Alu 1 148 0 4 1113 243 231 0 37 chr11 69218544 69218625 -52625231 + (TGG)n Simple_repeat Simple_repeat 1 78 0 5 1113 387 113 0 0 chr11 69218643 69218705 -52625151 + (TGG)n Simple_repeat Simple_repeat 2 63 0 5 1113 228 111 0 0 chr11 69219244 69219280 -52624576 + (CTG)n Simple_repeat Simple_repeat 1 36 0 5 1113 201 129 0 0 chr11 69219368 69219399 -52624457 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 5 1113 261 119 0 0 chr11 69219795 69219837 -52624019 + (CTG)n Simple_repeat Simple_repeat 3 44 0 5 1113 318 107 0 0 chr11 69220316 69220372 -52623484 + (TGG)n Simple_repeat Simple_repeat 2 57 0 5 1113 21 36 0 0 chr11 69225297 69225325 -52618531 + GC_rich Low_complexity Low_complexity 1 28 0 5 1113 209 233 32 48 chr11 69225488 69225614 -52618242 + (TCTCTG)n Simple_repeat Simple_repeat 1 124 0 5 1113 201 108 0 0 chr11 69225903 69225940 -52617916 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1113 250 291 70 35 chr11 69225945 69226059 -52617797 - MIRb SINE MIR -58 210 93 5 1113 402 85 0 0 chr11 69229741 69229800 -52614056 + (TCC)n Simple_repeat Simple_repeat 1 59 0 5 1113 212 0 36 0 chr11 69230187 69230215 -52613641 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1113 516 322 61 7 chr11 69230321 69230546 -52613310 - MIRb SINE MIR -8 254 14 5 1113 228 284 27 62 chr11 69235865 69235962 -52607894 - MIRb SINE MIR -169 99 2 5 1113 258 278 14 27 chr11 69237839 69237913 -52605943 - ID4_ SINE ID -10 73 1 5 1113 632 207 41 41 chr11 69237935 69238081 -52605775 - B1F2 SINE Alu -2 147 2 5 1113 277 308 0 20 chr11 69238185 69238291 -52605565 - BC1_Mm scRNA scRNA -46 106 3 5 1113 237 279 62 71 chr11 69238312 69238363 -52605493 + B4 SINE B4 39 149 -143 5 1113 311 197 16 0 chr11 69238363 69238424 -52605432 + B1_Mur4 SINE Alu 4 65 -85 5 1113 240 191 14 29 chr11 69238430 69238447 -52605409 + RLTR25A LTR ERVK 504 520 -583 5 1113 1260 34 0 7 chr11 69238447 69238595 -52605261 - B1_Mus2 SINE Alu 0 147 1 5 1113 240 191 14 29 chr11 69238595 69238647 -52605209 + RLTR25A LTR ERVK 521 571 -532 5 1113 633 92 10 10 chr11 69238597 69238696 -52605160 + B1_Mus2 SINE Alu 49 147 0 5 1113 886 238 19 14 chr11 69239013 69239222 -52604634 - B3 SINE B2 -5 211 2 5 1113 189 0 0 0 chr11 69239229 69239250 -52604606 + (CCG)n Simple_repeat Simple_repeat 2 22 0 5 1113 1106 108 0 0 chr11 69239287 69239435 -52604421 - B1_Mus1 SINE Alu 0 148 1 5 1113 611 198 15 22 chr11 69239458 69239592 -52604264 - B1_Mur3 SINE Alu -2 147 15 5 1113 399 273 5 39 chr11 69239651 69239780 -52604076 + ID_B1 SINE B4 44 164 -60 5 1113 228 289 107 12 chr11 69239705 69239789 -52604067 + B1_Mur4 SINE Alu 10 101 -49 5 1113 380 316 70 0 chr11 69239795 69239909 -52603947 - RSINE1 SINE B4 -35 130 9 5 1113 261 336 75 103 chr11 69240074 69240220 -52603636 + RSINE1 SINE B4 2 143 -22 5 1113 497 47 0 113 chr11 69240596 69240693 -52603163 - L1Md_F3 LINE L1 0 6584 6499 5 1113 298 125 0 81 chr11 69241028 69241090 -52602766 + B1_Mus1 SINE Alu 5 60 -89 5 1113 1149 72 0 0 chr11 69241198 69241337 -52602519 + B1_Mus2 SINE Alu 1 139 -8 5 1113 987 151 7 0 chr11 69241362 69241508 -52602348 - B1_Mur4 SINE Alu -1 149 3 5 1113 411 253 233 31 chr11 69241534 69241697 -52602159 - B3A SINE B2 -1 197 2 5 1113 243 0 0 0 chr11 69241709 69241736 -52602120 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1113 304 245 80 20 chr11 69241829 69241929 -52601927 + PB1D7 SINE Alu 13 118 -2 5 1113 791 168 58 7 chr11 69242102 69242240 -52601616 - B1_Mus1 SINE Alu -1 147 3 5 1113 354 273 118 13 chr11 69242491 69242643 -52601213 + MIR SINE MIR 85 252 -10 5 1113 1096 155 25 5 chr11 69243134 69243335 -52600521 + MTC LTR MaLR 1 205 -216 5 1113 1163 44 0 0 chr11 69243335 69243471 -52600385 + B1_Mus1 SINE Alu 2 137 -11 5 1113 414 0 0 0 chr11 69243471 69243517 -52600339 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 5 1113 1264 75 37 11 chr11 69243540 69243728 -52600128 + B2_Mm2 SINE B2 2 194 -1 5 1113 1146 141 51 9 chr11 69243749 69243964 -52599892 + MTC LTR MaLR 196 419 -2 5 1113 983 47 139 0 chr11 69244885 69245014 -52598842 - B1_Mus2 SINE Alu 0 147 1 5 1113 227 196 0 0 chr11 69245015 69245061 -52598795 + L1MA4 LINE L1 6175 6220 -80 5 1113 234 0 0 0 chr11 69245061 69245087 -52598769 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1113 471 265 79 29 chr11 69245119 69245259 -52598597 + B1F SINE Alu 1 147 -2 5 1113 1179 119 0 44 chr11 69245302 69245505 -52598351 - B2_Mm2 SINE B2 0 195 2 5 1113 468 0 0 0 chr11 69245562 69245614 -52598242 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1113 371 362 59 25 chr11 69245910 69246114 -52597742 - B4 SINE B4 -1 291 81 5 1113 210 360 86 13 chr11 69246699 69246851 -52597005 - L2b LINE L2 -1 3374 3212 5 1113 471 295 7 20 chr11 69247596 69247748 -52596108 + RSINE1 SINE B4 4 153 -12 5 1113 1234 41 7 0 chr11 69247862 69248009 -52595847 + B1_Mus1 SINE Alu 1 148 0 5 1113 604 276 37 27 chr11 69248140 69248358 -52595498 - B4A SINE B4 0 292 83 5 1113 231 36 0 0 chr11 69248358 69248386 -52595470 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 5 1113 575 279 34 64 chr11 69248386 69248401 -52595455 - B4 SINE B4 -210 82 66 5 1113 962 125 15 7 chr11 69248413 69248550 -52595306 - B1_Mur3 SINE Alu -11 138 1 5 1113 288 111 0 0 chr11 69250148 69250193 -52593663 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 5 1113 309 326 53 0 chr11 69251486 69251581 -52592275 + MIR SINE MIR 16 115 -147 5 1113 390 42 0 0 chr11 69251639 69251687 -52592169 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1113 387 0 0 0 chr11 69251687 69251729 -52592127 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1113 189 0 0 0 chr11 69251729 69251749 -52592107 + (CG)n Simple_repeat Simple_repeat 2 22 0 5 1113 229 184 2 208 chr11 69251752 69251839 -52592017 + ID_B1 SINE B4 95 172 -120 5 1113 186 43 0 0 chr11 69252020 69252043 -52591813 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 5 1113 294 176 115 51 chr11 69252133 69252211 -52591645 + ID4_ SINE ID 1 83 0 5 1113 451 258 32 8 chr11 69252391 69252516 -52591340 + B1F SINE Alu 1 128 -21 5 1113 1072 222 9 14 chr11 69252734 69252949 -52590907 + B3 SINE B2 2 215 -1 5 1113 1143 68 14 0 chr11 69252979 69253125 -52590731 + B1_Mus1 SINE Alu 1 148 0 5 1113 216 0 0 0 chr11 69253449 69253473 -52590383 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1113 844 128 0 0 chr11 69253721 69253854 -52590002 + B1_Mur4 SINE Alu 18 150 0 5 1113 632 133 9 0 chr11 69253923 69254028 -52589828 - URR1B DNA MER1_type 0 225 120 5 1113 669 235 167 0 chr11 69254066 69254287 -52589569 - Lx9 LINE L1 -56 7588 7331 5 1113 457 271 16 41 chr11 69254289 69254412 -52589444 - PB1D9 SINE Alu 0 120 1 5 1113 310 239 0 0 chr11 69254517 69254584 -52589272 + MLT1A0 LTR MaLR 86 152 -213 5 1113 384 277 18 82 chr11 69254595 69254705 -52589151 + PB1D7 SINE Alu 10 112 -8 5 1113 180 0 0 0 chr11 69254917 69254937 -52588919 + (TCTCTG)n Simple_repeat Simple_repeat 5 24 0 5 1113 378 0 0 0 chr11 69254937 69254978 -52588878 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1113 269 254 50 102 chr11 69254985 69255128 -52588728 + B3 SINE B2 44 185 -13 5 1113 270 0 0 0 chr11 69255132 69255162 -52588694 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 5 1113 248 316 26 0 chr11 69255194 69255270 -52588586 + ID_B1 SINE B4 117 194 -30 5 1113 226 310 79 10 chr11 69255270 69255295 -52588561 + B1F SINE Alu 36 143 -6 5 1113 912 203 155 10 chr11 69255313 69255507 -52588349 + ID_B1 SINE B4 2 223 -1 5 1113 3937 199 81 79 chr11 69255648 69256666 -52587190 + RMER1B Other Other 44 1063 -3 5 1113 246 258 5 65 chr11 69256779 69256858 -52586998 - PB1 SINE Alu -1 148 55 5 1113 491 0 0 17 chr11 69256858 69256918 -52586938 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1113 215 273 95 40 chr11 69256918 69256964 -52586892 - B1F2 SINE Alu -84 65 17 5 1113 315 0 0 0 chr11 69257489 69257524 -52586332 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1113 575 228 98 84 chr11 69257548 69257773 -52586083 - ORR1C2 LTR MaLR 0 384 157 5 1113 261 0 0 0 chr11 69257773 69257802 -52586054 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 5 1113 684 167 75 15 chr11 69257815 69257949 -52585907 - B1_Mus1 SINE Alu -1 147 6 5 1113 886 162 31 0 chr11 69257956 69258116 -52585740 - ORR1C2 LTR MaLR -219 165 1 5 1113 288 188 0 0 chr11 69258130 69258194 -52585662 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1113 1101 82 0 40 chr11 69258346 69258498 -52585358 + B1_Mus1 SINE Alu 2 147 -1 5 1113 1489 260 97 13 chr11 69258504 69258894 -52584962 - Lx6 LINE L1 -26 7434 7012 5 1113 357 0 57 0 chr11 69259012 69259065 -52584791 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1113 597 198 9 0 chr11 69259079 69259185 -52584671 - B1_Mur2 SINE Alu -34 115 9 5 1113 209 200 0 0 chr11 69259932 69259972 -52583884 + (CCCA)n Simple_repeat Simple_repeat 3 42 0 5 1113 429 20 0 0 chr11 69259973 69260023 -52583833 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1113 200 114 0 28 chr11 69260528 69260564 -52583292 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 5 1113 807 259 126 8 chr11 69260626 69260887 -52582969 + B4A SINE B4 1 292 0 5 1113 217 231 15 0 chr11 69260948 69261013 -52582843 + GA-rich Low_complexity Low_complexity 2 67 0 5 1113 904 133 14 7 chr11 69262732 69262876 -52580980 - B1_Mus1 SINE Alu -3 145 1 5 1113 587 273 0 7 chr11 69262924 69263064 -52580792 + B1F SINE Alu 6 144 -5 5 1113 392 281 103 54 chr11 69263333 69263536 -52580320 + MER21B LTR ERV1 648 860 -3 5 1113 514 307 20 55 chr11 69263585 69263785 -52580071 - ID_B1 SINE B4 -3 221 29 6 1113 294 95 0 0 chr11 69263806 69263848 -52580008 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 6 1113 783 203 0 0 chr11 69263848 69263986 -52579870 - B1_Mur1 SINE Alu -10 139 2 6 1113 481 243 9 18 chr11 69263988 69264101 -52579755 - PB1D10 SINE Alu 0 117 6 6 1113 264 316 46 31 chr11 69265026 69265188 -52578668 + MIRb SINE MIR 62 231 -37 6 1113 337 348 0 110 chr11 69265280 69265435 -52578421 - B1F1 SINE Alu -10 139 2 6 1113 733 259 125 35 chr11 69265462 69265809 -52578047 + L1MB2 LINE L1 5743 6108 -63 6 1113 380 287 107 15 chr11 69267022 69267153 -52576703 + B1F2 SINE Alu 6 148 -1 6 1113 335 21 43 0 chr11 69268053 69268100 -52575756 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1113 1217 42 0 7 chr11 69268100 69268236 -52575620 - B1_Mus1 SINE Alu -10 138 3 6 1113 183 177 48 0 chr11 69268269 69268331 -52575525 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1113 476 283 23 43 chr11 69268342 69268508 -52575348 - B3A SINE B2 -15 201 38 6 1113 739 193 13 46 chr11 69268514 69268666 -52575190 + B1_Mur2 SINE Alu 3 149 0 6 1113 499 122 11 11 chr11 69268757 69268848 -52575008 + (TCC)n Simple_repeat Simple_repeat 3 93 0 6 1113 612 191 363 0 chr11 69268853 69269010 -52574846 - B3 SINE B2 0 216 3 6 1113 627 224 241 0 chr11 69269036 69269206 -52574650 - B3 SINE B2 -4 212 2 6 1113 759 296 37 50 chr11 69269512 69269806 -52574050 + MER96B DNA hAT 1 294 -123 6 1113 294 29 0 0 chr11 69269813 69269848 -52574008 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 6 1113 1186 68 0 0 chr11 69269848 69269987 -52573869 - B1_Mus2 SINE Alu -7 140 2 6 1113 759 296 37 50 chr11 69269987 69270015 -52573841 + MER96B DNA hAT 295 319 -98 6 1113 727 155 0 4 chr11 69270183 69270318 -52573538 + B1_Mur3 SINE Alu 1 131 -18 6 1113 351 248 64 73 chr11 69270337 69270446 -52573410 + PB1D10 SINE Alu 10 117 0 6 1113 546 230 15 31 chr11 69271075 69271205 -52572651 + B1_Mur1 SINE Alu 2 129 -20 6 1113 210 71 0 0 chr11 69271742 69271770 -52572086 + (C)n Simple_repeat Simple_repeat 1 28 0 6 1113 216 0 0 0 chr11 69273144 69273168 -52570688 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1113 1217 55 7 0 chr11 69273174 69273320 -52570536 + B1_Mus2 SINE Alu 1 147 0 6 1113 846 176 0 21 chr11 69274015 69274160 -52569696 - B1_Mur3 SINE Alu -1 148 7 6 1113 819 189 7 20 chr11 69274241 69274392 -52569464 - B1_Mur1 SINE Alu 0 149 1 6 1113 223 282 188 0 chr11 69274511 69274596 -52569260 + PB1D10 SINE Alu 9 109 -8 6 1113 547 322 60 29 chr11 69274669 69274950 -52568906 + B4A SINE B4 1 290 -2 6 1113 255 31 0 0 chr11 69274976 69275008 -52568848 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1113 207 179 0 0 chr11 69275008 69275075 -52568781 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1113 270 0 0 0 chr11 69275076 69275106 -52568750 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1113 390 42 0 0 chr11 69275106 69275153 -52568703 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1113 318 111 0 0 chr11 69275171 69275216 -52568640 + B4A SINE B4 2 46 -246 6 1113 216 300 21 62 chr11 69275319 69275415 -52568441 + ID_B1 SINE B4 63 154 -70 6 1113 301 281 12 12 chr11 69275350 69275433 -52568423 + B1F SINE Alu 12 94 -55 6 1113 351 0 0 0 chr11 69275787 69275826 -52568030 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 6 1113 841 147 42 0 chr11 69275834 69275977 -52567879 - B1_Mur3 SINE Alu 0 149 1 6 1113 418 244 137 0 chr11 69276009 69276140 -52567716 - B1F2 SINE Alu 0 149 1 6 1113 243 0 0 0 chr11 69276402 69276429 -52567427 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 6 1113 1026 53 0 0 chr11 69276571 69276704 -52567152 + (CA)n Simple_repeat Simple_repeat 2 134 0 6 1113 1835 172 43 71 chr11 69277346 69277741 -52566115 + ORR1C2 LTR MaLR 1 384 0 6 1113 405 233 100 77 chr11 69277822 69277952 -52565904 + ID_B1 SINE B4 92 224 0 6 1113 236 250 19 0 chr11 69279494 69279546 -52564310 + ID4 SINE ID 22 74 -9 6 1113 241 283 0 0 chr11 69279549 69279602 -52564254 + polypurine Low_complexity Low_complexity 3 55 0 6 1113 616 242 75 85 chr11 69279604 69279897 -52563959 + B4A SINE B4 3 292 0 6 1113 218 312 26 13 chr11 69280060 69280138 -52563718 - L2b LINE L2 -6 3369 3291 6 1113 456 253 0 10 chr11 69280171 69280264 -52563592 + B3 SINE B2 2 93 -123 6 1113 1149 183 29 45 chr11 69280264 69280786 -52563070 + RMER17C LTR ERVK 1 410 0 6 1113 673 128 0 41 chr11 69280909 69281031 -52562825 + B1_Mur4 SINE Alu 32 148 -2 6 1113 775 143 30 8 chr11 69281217 69281351 -52562505 - B1_Mus1 SINE Alu -7 141 5 6 1113 397 254 152 0 chr11 69281361 69281479 -52562377 - B1F SINE Alu 0 149 14 6 1113 1390 49 5 21 chr11 69281525 69281714 -52562142 - B2_Mm1a SINE B2 -7 186 1 6 1113 1265 197 16 26 chr11 69281965 69282272 -52561584 + RLTR28 LTR ERVL 218 521 -3 6 1113 186 171 0 0 chr11 69282349 69282390 -52561466 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1113 26 0 0 0 chr11 69282390 69282416 -52561440 + AT_rich Low_complexity Low_complexity 1 26 0 6 1113 415 344 54 37 chr11 69282556 69282961 -52560895 - L1M5 LINE L1 -3504 2642 2231 6 1113 330 312 70 45 chr11 69283454 69283696 -52560160 - HAL1 LINE L1 -858 1649 1402 6 1113 468 91 0 0 chr11 69284212 69284278 -52559578 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1113 351 0 0 0 chr11 69284744 69284783 -52559073 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1113 396 0 0 0 chr11 69284786 69284830 -52559026 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1113 350 253 0 0 chr11 69284834 69284909 -52558947 - ID_B1 SINE B4 -28 196 122 6 1113 418 230 0 48 chr11 69286111 69286216 -52557640 + B1_Mur1 SINE Alu 42 141 -8 6 1113 213 108 0 0 chr11 69286217 69286254 -52557602 + (TAAG)n Simple_repeat Simple_repeat 1 37 0 6 1113 593 236 0 0 chr11 69286442 69286569 -52557287 + RSINE1 SINE B4 3 129 -36 6 1113 1304 45 0 54 chr11 69286618 69286785 -52557071 + B2_Mm2 SINE B2 2 165 -30 6 1113 243 0 0 0 chr11 69286785 69286812 -52557044 + (TAA)n Simple_repeat Simple_repeat 1 27 0 6 1113 1304 45 0 54 chr11 69286812 69286830 -52557026 + B2_Mm2 SINE B2 166 177 -18 6 1113 186 43 0 0 chr11 69288636 69288659 -52555197 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 6 1113 1103 122 28 0 chr11 69289516 69289696 -52554160 + B2_Mm2 SINE B2 2 186 -9 6 1113 182 118 0 29 chr11 69291750 69291785 -52552071 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 6 1113 575 128 29 0 chr11 69292007 69292109 -52551747 + T-rich Low_complexity Low_complexity 3 107 0 6 1113 470 93 0 0 chr11 69292112 69292187 -52551669 - B1_Mur4 SINE Alu 0 150 76 6 1113 229 250 0 64 chr11 69292187 69292203 -52551653 - ID_B1 SINE B4 0 221 137 6 1113 189 0 0 0 chr11 69292400 69292421 -52551435 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 6 1113 998 82 7 0 chr11 69292422 69292557 -52551299 - B1_Mus1 SINE Alu -12 136 1 6 1113 983 123 17 23 chr11 69292567 69292741 -52551115 - B2_Mm2 SINE B2 -9 186 14 6 1113 4849 203 63 26 chr11 69293673 69294825 -52549031 + Lx9 LINE L1 6449 7643 -1 6 1113 909 105 65 166 chr11 69294827 69294867 -52548989 + B2_Mm2 SINE B2 1 40 -155 6 1113 1182 35 7 0 chr11 69294867 69295012 -52548844 + B1_Mm SINE Alu 1 146 -1 6 1113 909 105 65 166 chr11 69295012 69295188 -52548668 + B2_Mm2 SINE B2 41 195 0 6 1113 1124 49 14 0 chr11 69295385 69295528 -52548328 + B1_Mm SINE Alu 3 147 0 6 1113 207 0 0 0 chr11 69295528 69295551 -52548305 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1113 411 68 0 0 chr11 69295593 69295652 -52548204 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 6 1113 1018 122 72 0 chr11 69295655 69295835 -52548021 + B2_Mm1a SINE B2 1 193 0 6 1113 249 139 0 0 chr11 69295836 69295879 -52547977 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1113 285 29 0 0 chr11 69296320 69296354 -52547502 + (CCA)n Simple_repeat Simple_repeat 3 36 0 6 1113 352 278 85 22 chr11 69296359 69296531 -52547325 - MIR SINE MIR -26 182 3 6 1113 1041 91 0 0 chr11 69296999 69297142 -52546714 + B2_Mm2 SINE B2 2 144 -51 6 1113 229 327 71 26 chr11 69298225 69298338 -52545518 - MIRb SINE MIR -39 229 112 6 1113 340 254 69 38 chr11 69298609 69298740 -52545116 + L1MA4 LINE L1 5692 5826 -474 6 1113 384 218 218 0 chr11 69298759 69298860 -52544996 + B1_Mur1 SINE Alu 21 143 -6 6 1113 1136 98 60 0 chr11 69298872 69299055 -52544801 + B2_Mm2 SINE B2 2 195 0 6 1113 289 284 39 0 chr11 69299077 69299179 -52544677 + L1MA8 LINE L1 5949 6054 -237 6 1113 336 336 68 15 chr11 69299195 69299328 -52544528 + B4A SINE B4 4 143 -149 6 1113 324 0 0 0 chr11 69299332 69299368 -52544488 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1113 687 25 0 0 chr11 69299368 69299448 -52544408 + (GA)n Simple_repeat Simple_repeat 2 82 0 6 1113 285 316 36 48 chr11 69299465 69299631 -52544225 + L1MA8 LINE L1 6128 6291 0 6 1113 394 277 12 159 chr11 69299634 69299797 -52544059 + RSINE1 SINE B4 3 141 -24 6 1113 192 77 0 0 chr11 69299797 69299823 -52544033 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1113 1404 68 16 0 chr11 69299859 69300049 -52543807 + B2_Mm2 SINE B2 2 194 -1 6 1113 244 227 91 0 chr11 69300075 69300141 -52543715 + ID4_ SINE ID 11 82 -1 6 1113 583 304 57 37 chr11 69300143 69300389 -52543467 + B4A SINE B4 1 251 -41 6 1113 186 103 0 0 chr11 69300850 69300879 -52542977 + (G)n Simple_repeat Simple_repeat 1 29 0 7 1113 1307 303 70 52 chr11 69301024 69301488 -52542368 + L1MB5 LINE L1 5388 5872 -302 7 1113 900 100 0 54 chr11 69301488 69301636 -52542220 + B1_Mur4 SINE Alu 1 140 -10 7 1113 212 0 36 0 chr11 69301636 69301664 -52542192 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1113 1307 303 70 52 chr11 69301664 69301800 -52542056 + L1MB5 LINE L1 5873 5999 -175 7 1113 1338 57 11 0 chr11 69301861 69302038 -52541818 - B2_Mm1t SINE B2 -14 179 1 7 1113 802 144 99 6 chr11 69302077 69302238 -52541618 - B3 SINE B2 -3 213 38 7 1113 418 227 10 20 chr11 69302239 69302329 -52541527 + ORR1C1 LTR MaLR 1 89 -289 7 1113 4718 202 91 77 chr11 69302329 69303452 -52540404 + ORR1C1-int LTR MaLR 1 1188 -182 7 1113 1401 51 0 6 chr11 69303452 69303630 -52540226 - B2_Mm2 SINE B2 -18 177 1 7 1113 4718 202 91 77 chr11 69303630 69303652 -52540204 + ORR1C1-int LTR MaLR 1189 1191 -179 7 1113 1156 41 7 0 chr11 69303652 69303797 -52540059 - B1_Mus2 SINE Alu 0 147 2 7 1113 4718 202 91 77 chr11 69303797 69304001 -52539855 + ORR1C1-int LTR MaLR 1192 1370 0 7 1113 1693 144 131 9 chr11 69304001 69304338 -52539518 + ORR1C1 LTR MaLR 1 378 0 7 1113 423 83 0 0 chr11 69304368 69304428 -52539428 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1113 338 300 66 16 chr11 69304590 69304712 -52539144 + L1MB5 LINE L1 6047 6174 0 7 1113 868 171 0 27 chr11 69304729 69304879 -52538977 + B1_Mur4 SINE Alu 5 150 0 7 1113 521 252 0 5 chr11 69306348 69306571 -52537285 + (CA)n Simple_repeat Simple_repeat 1 221 0 7 1113 493 204 18 27 chr11 69307078 69307189 -52536667 - PB1 SINE Alu -1 126 17 7 1113 300 224 222 8 chr11 69308065 69308182 -52535674 - MIR3 SINE MIR -65 143 2 7 1113 200 143 0 54 chr11 69308312 69308349 -52535507 + C-rich Low_complexity Low_complexity 4 38 0 7 1113 1478 52 16 0 chr11 69309076 69309268 -52534588 - B2_Mm2 SINE B2 0 195 1 7 1113 702 227 0 20 chr11 69309306 69309459 -52534397 + B3 SINE B2 65 214 -2 7 1113 937 139 0 0 chr11 69309477 69309614 -52534242 + B1_Mur4 SINE Alu 1 137 -13 7 1113 368 131 0 14 chr11 69309615 69309685 -52534171 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 7 1113 985 170 106 0 chr11 69310290 69310478 -52533378 + B3 SINE B2 1 208 -8 7 1113 329 232 19 38 chr11 69310481 69310638 -52533218 + (CAGA)n Simple_repeat Simple_repeat 3 156 0 7 1113 484 82 340 7 chr11 69310670 69310801 -52533055 + B2_Mm2 SINE B2 17 191 -4 7 1113 1176 22 0 0 chr11 69310806 69310944 -52532912 + B1_Mus2 SINE Alu 2 139 -8 7 1113 188 0 74 0 chr11 69310944 69310971 -52532885 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1113 419 240 75 67 chr11 69310973 69311241 -52532615 + Lx9 LINE L1 7373 7642 -2 7 1113 985 208 30 21 chr11 69311623 69311843 -52532013 + B3 SINE B2 7 216 0 7 1113 21 36 0 0 chr11 69312363 69312391 -52531465 + AT_rich Low_complexity Low_complexity 1 28 0 7 1113 622 262 0 0 chr11 69312903 69313040 -52530816 + RSINE1 SINE B4 2 138 -27 7 1113 550 181 140 42 chr11 69313040 69313213 -52530643 + B3 SINE B2 2 174 -21 7 1113 288 289 165 0 chr11 69313247 69313344 -52530512 + MER3 DNA MER1_type 91 203 -6 7 1113 1200 41 0 0 chr11 69313462 69313608 -52530248 + B1_Mus2 SINE Alu 2 147 0 7 1113 707 285 52 20 chr11 69313644 69313895 -52529961 + MLT1A0 LTR MaLR 64 322 -43 7 1113 1133 75 0 0 chr11 69313966 69314112 -52529744 - B1_Mus1 SINE Alu 0 148 3 7 1113 288 331 65 26 chr11 69315062 69315217 -52528639 + HAL1 LINE L1 648 808 -1699 7 1113 279 308 45 55 chr11 69315315 69315425 -52528431 - PB1D10 SINE Alu -8 109 1 7 1113 323 278 0 76 chr11 69315336 69315441 -52528415 - ID_B1 SINE B4 -60 164 68 7 1113 225 0 0 0 chr11 69315820 69315845 -52528011 + (CCCTG)n Simple_repeat Simple_repeat 4 28 0 7 1113 198 0 0 0 chr11 69316110 69316132 -52527724 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1113 436 278 9 0 chr11 69316185 69316293 -52527563 + B1_Mur1 SINE Alu 1 109 -40 7 1113 1495 230 37 121 chr11 69316452 69316596 -52527260 + L1_Mur3 LINE L1 4689 4813 -1067 7 1113 685 179 49 28 chr11 69316596 69316740 -52527116 - B1_Mus2 SINE Alu 0 147 1 7 1113 1495 230 37 121 chr11 69316740 69317052 -52526804 + L1_Mur3 LINE L1 4814 5116 -764 7 1113 1192 27 7 0 chr11 69317052 69317198 -52526658 + B1_Mus1 SINE Alu 1 147 -1 7 1113 1495 230 37 121 chr11 69317198 69317309 -52526547 + L1_Mur3 LINE L1 5117 5209 -671 7 1113 1000 189 75 0 chr11 69317854 69318055 -52525801 - B3 SINE B2 0 216 1 7 1113 647 207 25 94 chr11 69318818 69318846 -52525010 - B1_Mur2 SINE Alu 0 149 125 7 1113 1195 84 90 0 chr11 69318846 69319024 -52524832 + B2_Mm2 SINE B2 2 195 0 7 1113 659 181 19 13 chr11 69319024 69319155 -52524701 - B1_Mus2 SINE Alu -25 124 1 7 1113 781 172 25 0 chr11 69319382 69319558 -52524298 + B3 SINE B2 9 193 -5 7 1113 397 256 42 125 chr11 69319533 69319555 -52524301 + B4 SINE B4 73 157 -135 7 1113 814 170 13 13 chr11 69319555 69319704 -52524152 + B1_Mur4 SINE Alu 1 149 -1 7 1113 397 256 42 125 chr11 69319704 69319725 -52524131 + B4 SINE B4 158 248 -44 7 1113 530 54 14 0 chr11 69319866 69319940 -52523916 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1113 710 189 0 0 chr11 69320143 69320270 -52523586 - ID_B1 SINE B4 0 224 98 7 1113 373 333 164 13 chr11 69320502 69320862 -52522994 + L1M5 LINE L1 4396 4819 -1327 7 1113 25 0 0 0 chr11 69320875 69320900 -52522956 + AT_rich Low_complexity Low_complexity 1 25 0 7 1113 213 39 0 0 chr11 69321118 69321144 -52522712 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 7 1113 1079 63 0 7 chr11 69321144 69321288 -52522568 - B1_Mm SINE Alu -3 144 2 7 1113 338 309 7 102 chr11 69321288 69321381 -52522475 + ID_B1 SINE B4 93 184 -40 7 1113 1355 70 21 0 chr11 69321381 69321568 -52522288 + B2_Mm1a SINE B2 2 192 -1 7 1113 338 309 7 102 chr11 69321568 69321611 -52522245 + ID_B1 SINE B4 185 216 -8 7 1113 257 234 22 54 chr11 69321615 69321800 -52522056 + (CATA)n Simple_repeat Simple_repeat 2 180 0 7 1113 1197 54 0 0 chr11 69322118 69322265 -52521591 - B1_Mus2 SINE Alu 0 147 1 7 1113 357 297 71 39 chr11 69322315 69322497 -52521359 + HAL1 LINE L1 1562 1749 -758 7 1113 258 32 0 0 chr11 69322516 69322547 -52521309 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 7 1113 1028 140 0 39 chr11 69322609 69322788 -52521068 + B2_Mm2 SINE B2 3 174 -21 7 1113 1227 84 16 33 chr11 69322788 69322972 -52520884 + B2_Mm2 SINE B2 1 181 -14 7 1113 1092 76 7 0 chr11 69322983 69323128 -52520728 - B1_Mus1 SINE Alu -1 147 2 7 1113 376 250 25 33 chr11 69323533 69323653 -52520203 + PB1D7 SINE Alu 1 119 -1 7 1113 495 48 0 0 chr11 69325087 69325149 -52518707 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1113 422 282 23 0 chr11 69325203 69325334 -52518522 + RSINE1 SINE B4 1 134 -31 7 1113 243 0 0 0 chr11 69325338 69325365 -52518491 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 7 1113 473 202 73 0 chr11 69325659 69325768 -52518088 - RSINE1 SINE B4 0 165 49 7 1113 693 228 0 22 chr11 69325920 69326059 -52517797 + B1_Mur4 SINE Alu 2 137 -13 7 1113 645 218 7 39 chr11 69326283 69326436 -52517420 - B1_Mur2 SINE Alu 0 149 2 7 1113 891 178 161 0 chr11 69326448 69326628 -52517228 - B3 SINE B2 -5 211 3 7 1113 391 237 20 51 chr11 69327304 69327402 -52516454 - PB1D10 SINE Alu -20 97 3 7 1113 740 135 33 66 chr11 69327742 69327893 -52515963 + B1_Mur4 SINE Alu 4 149 -1 7 1113 255 170 0 0 chr11 69327893 69327940 -52515916 + GA-rich Low_complexity Low_complexity 2 48 0 7 1113 317 300 50 0 chr11 69327954 69328054 -52515802 + PB1D10 SINE Alu 3 107 -10 7 1113 706 256 40 36 chr11 69332025 69332248 -52511608 + B4A SINE B4 1 224 -68 7 1113 1057 182 34 10 chr11 69332251 69332456 -52511400 + B3 SINE B2 1 210 -6 7 1113 719 106 0 31 chr11 69332473 69332600 -52511256 + B1_Mus2 SINE Alu 25 147 0 7 1113 331 265 35 163 chr11 69332479 69332682 -52511174 + B4A SINE B4 114 290 -2 7 1113 411 333 24 0 chr11 69332783 69332951 -52510905 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 1113 207 0 0 0 chr11 69332987 69333010 -52510846 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1113 972 197 35 5 chr11 69333131 69333330 -52510526 - B3 SINE B2 -10 206 2 7 1113 632 185 251 6 chr11 69333361 69333540 -52510316 - ID_B1 SINE B4 0 224 2 7 1113 467 329 76 0 chr11 69335047 69335205 -52508651 + MER2B DNA MER2_type 159 328 -8 7 1113 251 284 30 0 chr11 69335528 69335595 -52508261 - ID4_ SINE ID -7 76 8 7 1113 599 211 228 0 chr11 69335626 69335797 -52508059 - B3 SINE B2 -6 210 1 7 1113 294 205 12 82 chr11 69335879 69335964 -52507892 - PB1D9 SINE Alu -40 80 2 7 1113 852 241 4 84 chr11 69336114 69336299 -52507557 - B3 SINE B2 -7 209 41 7 1113 1582 36 0 0 chr11 69336299 69336492 -52507364 - B2_Mm1a SINE B2 0 193 1 7 1113 852 241 4 84 chr11 69336492 69336532 -52507324 - B3 SINE B2 -176 40 2 7 1113 781 185 7 27 chr11 69336565 69336715 -52507141 - B1_Mur2 SINE Alu -2 147 1 7 1113 207 0 0 0 chr11 69336729 69336752 -52507104 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1113 238 246 66 0 chr11 69336752 69336813 -52507043 - PB1D10 SINE Alu -13 104 40 7 1113 423 246 25 50 chr11 69336848 69336968 -52506888 - PB1D10 SINE Alu 0 117 1 7 139 887 235 9 33 chr11 69336993 69337204 -52506652 - ID_B1 SINE B4 -17 207 2 7 1114 533 192 0 9 chr11 69337366 69337471 -52506385 + B1_Mur3 SINE Alu 1 104 -45 7 1114 221 261 146 42 chr11 69338067 69338163 -52505693 + L2a LINE L2 3321 3426 0 7 1114 775 134 0 78 chr11 69338262 69338416 -52505440 + B1_Mur4 SINE Alu 8 149 -1 7 1114 365 262 151 0 chr11 69338465 69338591 -52505265 - ID_B1 SINE B4 -1 223 79 7 1114 301 258 31 10 chr11 69338795 69338893 -52504963 - HAL1b LINE L1 -243 1766 1667 7 1114 195 114 0 0 chr11 69338916 69338951 -52504905 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1114 330 87 0 0 chr11 69339114 69339160 -52504696 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1114 463 297 40 13 chr11 69339166 69339316 -52504540 - RSINE1 SINE B4 -9 156 3 8 1114 330 132 0 0 chr11 69339344 69339397 -52504459 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1114 223 232 40 80 chr11 69339410 69339485 -52504371 - B1F2 SINE Alu -77 72 1 8 1114 317 250 232 27 chr11 69339492 69339677 -52504179 - L1MC4 LINE L1 0 8042 7820 8 1114 570 241 27 41 chr11 69339835 69339982 -52503874 - B1_Mur1 SINE Alu -3 146 2 8 1114 753 125 0 0 chr11 69339985 69340137 -52503719 + (TG)n Simple_repeat Simple_repeat 1 152 0 8 1114 207 0 0 0 chr11 69340153 69340176 -52503680 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1114 405 0 0 0 chr11 69340303 69340348 -52503508 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1114 289 276 0 0 chr11 69340348 69340406 -52503450 - B1F1 SINE Alu -91 58 1 8 1114 265 273 0 70 chr11 69340406 69340419 -52503437 - B4A SINE B4 -149 143 78 8 1114 256 278 71 10 chr11 69340437 69340535 -52503321 - L1MC4 LINE L1 -484 7558 7455 8 1114 585 318 162 21 chr11 69340733 69341314 -52502542 - HAL1b LINE L1 -1223 786 124 7 1114 342 212 72 56 chr11 69341620 69341745 -52502111 - MTEa LTR MaLR -55 324 198 8 1114 381 22 0 0 chr11 69341907 69341953 -52501903 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1114 1356 51 17 6 chr11 69341953 69342130 -52501726 - B2_Mm2 SINE B2 -15 180 2 8 1114 207 0 0 0 chr11 69342278 69342301 -52501555 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1114 1043 100 0 7 chr11 69342344 69342495 -52501361 - B1_Mur4 SINE Alu 0 150 1 8 1114 566 313 14 28 chr11 69342522 69342739 -52501117 - ID_B1 SINE B4 -7 217 4 8 1114 1125 72 0 113 chr11 69343816 69344020 -52499836 + B2_Mm2 SINE B2 1 181 -14 8 1114 387 101 361 0 chr11 69344052 69344160 -52499696 + B2_Mm2 SINE B2 47 193 -2 8 1114 833 157 5 114 chr11 69344366 69344507 -52499349 - B3 SINE B2 0 216 84 8 1114 1166 48 0 0 chr11 69344507 69344654 -52499202 + B1_Mus2 SINE Alu 1 147 0 8 1114 833 157 5 114 chr11 69344654 69344713 -52499143 - B3 SINE B2 -133 83 38 8 1114 291 325 12 0 chr11 69345205 69345288 -52498568 - PB1D10 SINE Alu 0 117 34 8 1114 722 146 309 0 chr11 69345334 69345499 -52498357 + B3 SINE B2 1 216 0 8 1114 236 224 104 0 chr11 69345935 69346002 -52497854 + L1MB7 LINE L1 5593 5666 -508 8 1114 1091 128 0 6 chr11 69346109 69346274 -52497582 - B2_Mm2 SINE B2 -31 164 1 8 1114 822 121 15 15 chr11 69346277 69346411 -52497445 + B1_Mur4 SINE Alu 15 148 -2 8 1114 321 292 42 83 chr11 69346411 69346445 -52497411 + B4A SINE B4 99 259 -33 8 1114 433 233 199 31 chr11 69346554 69346780 -52497076 + L1MB7 LINE L1 5733 5996 -188 8 1114 1522 92 5 0 chr11 69346856 69347074 -52496782 + RMER6A LTR ERVK 67 285 -471 8 1114 617 168 214 77 chr11 69347074 69347228 -52496628 + B3 SINE B2 24 199 -17 8 1114 800 0 21 0 chr11 69347228 69347323 -52496533 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 8 1114 617 168 214 77 chr11 69347323 69347336 -52496520 + B3 SINE B2 200 213 -3 8 1114 501 248 8 8 chr11 69347413 69347531 -52496325 + PB1D7 SINE Alu 1 118 -2 8 1114 1095 65 0 0 chr11 69347648 69347787 -52496069 + B1_Mm SINE Alu 1 139 -8 8 1114 283 320 21 99 chr11 69347806 69347948 -52495908 + B4 SINE B4 6 136 -156 8 1114 1284 44 77 6 chr11 69348161 69348342 -52495514 - B2_Mm2 SINE B2 -1 194 1 8 1114 297 0 0 0 chr11 69348438 69348471 -52495385 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1114 725 248 35 110 chr11 69348474 69348566 -52495290 + MTD LTR MaLR 1 73 -346 8 1114 943 158 16 52 chr11 69348566 69348760 -52495096 + B2_Mm2 SINE B2 2 188 -7 8 1114 725 248 35 110 chr11 69348760 69348894 -52494962 + MTD LTR MaLR 74 210 -209 8 1114 904 169 124 0 chr11 69348894 69349071 -52494785 + B3 SINE B2 1 199 -17 8 1114 638 121 35 14 chr11 69349075 69349217 -52494639 + (CATA)n Simple_repeat Simple_repeat 2 146 0 8 1114 387 262 123 0 chr11 69349217 69349339 -52494517 + MTD LTR MaLR 186 322 -97 8 1114 297 75 0 0 chr11 69349441 69349481 -52494375 + (GGA)n Simple_repeat Simple_repeat 3 42 0 8 1114 400 242 10 0 chr11 69349529 69349628 -52494228 + L1MB7 LINE L1 6028 6127 -57 8 1114 1941 198 48 89 chr11 69349633 69349740 -52494116 + RCHARR1 DNA MER1_type 3 95 -879 8 1114 699 241 12 12 chr11 69349740 69349900 -52493956 + RSINE1 SINE B4 3 162 -3 8 1114 1941 198 48 89 chr11 69349900 69350046 -52493810 + RCHARR1 DNA MER1_type 96 226 -748 8 1114 270 81 0 0 chr11 69350046 69350083 -52493773 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1114 1941 198 48 89 chr11 69350083 69350344 -52493512 + RCHARR1 DNA MER1_type 227 496 -478 8 1114 212 305 35 47 chr11 69350350 69350436 -52493420 + PB1D10 SINE Alu 6 90 -27 8 1114 568 204 0 0 chr11 69350459 69350567 -52493289 + B1_Mur1 SINE Alu 33 140 -9 8 1114 207 69 0 0 chr11 69350569 69350598 -52493258 + (CATA)n Simple_repeat Simple_repeat 2 30 0 8 1114 320 237 105 0 chr11 69350600 69350676 -52493180 + B3A SINE B2 36 119 -79 8 1114 26 30 0 0 chr11 69350789 69350822 -52493034 + AT_rich Low_complexity Low_complexity 1 33 0 8 1114 330 336 52 13 chr11 69350831 69350985 -52492871 + RSINE1 SINE B4 6 165 0 8 1114 236 294 184 0 chr11 69351826 69351962 -52491894 + RMER15 LTR ERVL 400 560 -15 8 1114 774 140 88 0 chr11 69352060 69352196 -52491660 + B1_Mur3 SINE Alu 2 149 0 8 1114 1256 94 77 0 chr11 69352293 69352474 -52491382 + B2_Mm2 SINE B2 1 195 0 8 1114 735 82 195 8 chr11 69352474 69352597 -52491259 + B1_Mus1 SINE Alu 3 148 0 8 1114 302 205 13 0 chr11 69352605 69352683 -52491173 + GA-rich Low_complexity Low_complexity 5 83 0 8 1114 738 217 122 29 chr11 69352973 69353103 -52490753 + ID_B1 SINE B4 1 151 -73 8 1114 1959 161 94 20 chr11 69353103 69353495 -52490361 + MTC LTR MaLR 1 421 0 8 1114 738 217 122 29 chr11 69353495 69353568 -52490288 + ID_B1 SINE B4 152 223 -1 8 1114 527 284 10 91 chr11 69353610 69353819 -52490037 - MER46C DNA MER2_type -114 224 33 8 1114 511 315 0 0 chr11 69353854 69353997 -52489859 - RSINE1 SINE B4 -21 144 2 8 1114 664 179 7 43 chr11 69354065 69354205 -52489651 - B1_Mur3 SINE Alu -10 139 5 8 1114 924 196 77 0 chr11 69354419 69354613 -52489243 - B3 SINE B2 0 216 8 8 1114 579 78 0 0 chr11 69354624 69354714 -52489142 + (CA)n Simple_repeat Simple_repeat 2 91 0 8 1114 482 271 53 18 chr11 69354734 69354903 -52488953 + B3A SINE B2 5 179 -19 8 1114 552 164 137 23 chr11 69354973 69355104 -52488752 + B1F2 SINE Alu 2 147 -2 8 1114 767 84 0 191 chr11 69355124 69355165 -52488691 + B2_Mm2 SINE B2 2 41 -154 8 1114 1621 26 0 0 chr11 69355165 69355357 -52488499 + B2_Mm1a SINE B2 2 193 0 8 1114 767 84 0 191 chr11 69355357 69355477 -52488379 + B2_Mm2 SINE B2 42 132 -63 8 1114 483 111 0 0 chr11 69355477 69355543 -52488313 + B2_Mm2 SINE B2 94 159 -36 8 1114 228 35 0 0 chr11 69355543 69355572 -52488284 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 8 1114 371 75 38 2 chr11 69355609 69355714 -52488142 + B2_Mm2 SINE B2 47 191 -4 8 1114 845 147 0 35 chr11 69355714 69355855 -52488001 + B1_Mur3 SINE Alu 1 136 -13 8 1114 210 118 0 0 chr11 69355855 69355889 -52487967 + (G)n Simple_repeat Simple_repeat 1 34 0 8 1114 243 320 9 80 chr11 69356195 69356307 -52487549 + PB1 SINE Alu 14 117 -10 8 1114 492 68 0 0 chr11 69356307 69356380 -52487476 + (TG)n Simple_repeat Simple_repeat 1 73 0 8 1114 352 266 0 0 chr11 69356437 69356516 -52487340 + ID4 SINE ID 5 83 0 8 1114 698 212 91 20 chr11 69356702 69356899 -52486957 + B3 SINE B2 1 211 -5 8 1114 25 31 0 0 chr11 69356908 69356940 -52486916 + AT_rich Low_complexity Low_complexity 1 32 0 8 1114 662 209 7 7 chr11 69357652 69357801 -52486055 + B1_Mur1 SINE Alu 1 149 0 8 1114 284 217 0 62 chr11 69358240 69358304 -52485552 + ID4 SINE ID 15 74 -9 8 1114 215 311 13 51 chr11 69358304 69358316 -52485540 + B4 SINE B4 15 87 -205 8 1114 411 289 59 7 chr11 69358396 69358532 -52485324 + RSINE1 SINE B4 3 145 -20 8 1114 195 42 0 0 chr11 69358532 69358556 -52485300 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1114 428 258 109 36 chr11 69358647 69358784 -52485072 + B3A SINE B2 50 196 -2 8 1114 309 209 0 0 chr11 69358784 69358851 -52485005 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 8 1114 21 0 0 0 chr11 69360600 69360621 -52483235 + AT_rich Low_complexity Low_complexity 1 21 0 8 1114 416 268 0 20 chr11 69361219 69361318 -52482538 - B1F2 SINE Alu -52 97 1 8 1114 379 301 53 53 chr11 69363444 69363595 -52480261 + RSINE1 SINE B4 15 165 0 8 1114 222 37 0 0 chr11 69363608 69363635 -52480221 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 8 1114 383 296 0 34 chr11 69363894 69364013 -52479843 - PB1D10 SINE Alu -2 115 1 8 1114 911 50 8 0 chr11 69364157 69364278 -52479578 + (TTCCC)n Simple_repeat Simple_repeat 4 125 0 8 1114 672 83 28 0 chr11 69364308 69364417 -52479439 + (TC)n Simple_repeat Simple_repeat 2 113 0 8 1114 865 147 7 0 chr11 69364442 69364578 -52479278 - B1_Mus2 SINE Alu -9 138 2 8 1114 1085 63 28 0 chr11 69364705 69364848 -52479008 - B1_Mus1 SINE Alu -1 147 1 8 1114 874 133 7 34 chr11 69365117 69365265 -52478591 + B1_Mur3 SINE Alu 5 148 -1 8 1114 47 0 0 0 chr11 69365265 69365312 -52478544 + AT_rich Low_complexity Low_complexity 1 47 0 8 1114 349 255 0 52 chr11 69365333 69365438 -52478418 + B1_Mus2 SINE Alu 3 101 -19 8 1114 401 234 154 15 chr11 69365445 69365575 -52478281 - B1_Mur4 SINE Alu -1 149 2 8 1114 204 97 0 0 chr11 69365590 69365621 -52478235 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 8 1114 690 259 53 11 chr11 69365678 69365865 -52477991 + B3 SINE B2 1 195 -21 8 1114 186 43 0 0 chr11 69367536 69367559 -52476297 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1114 228 232 18 0 chr11 69368955 69369011 -52474845 + GA-rich Low_complexity Low_complexity 1 57 0 8 1114 183 42 0 0 chr11 69372072 69372096 -52471760 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1114 314 251 68 42 chr11 69372153 69372296 -52471560 - MIRb SINE MIR -121 155 20 9 1114 197 211 48 84 chr11 69374205 69374288 -52469568 - MIR SINE MIR -94 114 35 9 1114 237 33 0 0 chr11 69377237 69377267 -52466589 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 9 1114 253 314 0 0 chr11 69377740 69377810 -52466046 - ID SINE ID -152 72 3 9 1114 265 273 0 0 chr11 69377839 69377905 -52465951 + ID2 SINE ID 2 67 -16 9 1114 383 283 0 26 chr11 69377948 69378064 -52465792 + B1F SINE Alu 13 125 -24 9 1114 603 179 0 9 chr11 69378128 69378235 -52465621 - PB1D9 SINE Alu -13 107 2 9 1114 211 217 0 0 chr11 69378260 69378306 -52465550 + B1F SINE Alu 97 142 -7 9 1114 763 258 40 53 chr11 69378312 69378537 -52465319 + ID_B1 SINE B4 3 224 0 9 1114 263 188 188 0 chr11 69378574 69378654 -52465202 + RSINE1 SINE B4 2 96 -69 9 1114 1110 42 21 0 chr11 69379233 69379377 -52464479 + B1_Mm SINE Alu 1 147 0 9 1114 451 315 43 43 chr11 69379787 69379996 -52463860 + MTC LTR MaLR 32 240 -181 9 1114 786 176 0 27 chr11 69380455 69380601 -52463255 + B1_Mur4 SINE Alu 2 143 -7 9 1114 1061 198 19 0 chr11 69380942 69381149 -52462707 - B3 SINE B2 -1 215 5 9 1114 858 260 86 65 chr11 69381694 69382019 -52461837 - MER2 DNA MER2_type -13 332 1 9 1114 297 224 16 129 chr11 69382063 69382224 -52461632 + MT2B2 LTR ERVL 98 244 -357 9 1114 421 179 61 31 chr11 69382149 69382247 -52461609 + PB1D10 SINE Alu 14 114 -3 9 1114 317 283 44 9 chr11 69382580 69382694 -52461162 + PB1D9 SINE Alu 3 120 0 9 1114 339 257 29 29 chr11 69382815 69382919 -52460937 - PB1D10 SINE Alu -13 104 1 9 1114 329 230 0 51 chr11 69383255 69383333 -52460523 - B1F SINE Alu -1 148 75 9 1114 1061 163 76 5 chr11 69383443 69383653 -52460203 - URR1B DNA MER1_type 0 225 1 9 1114 978 109 0 0 chr11 69383829 69383966 -52459890 - B1_Mur4 SINE Alu -13 137 1 9 1114 691 267 28 11 chr11 69384007 69384185 -52459671 - B3A SINE B2 -16 182 2 9 1114 287 285 69 49 chr11 69384202 69384346 -52459510 - B1F1 SINE Alu -2 147 1 9 1114 531 269 135 33 chr11 69384553 69384768 -52459088 - MTE2b LTR MaLR -5 374 138 9 1114 226 152 87 0 chr11 69384787 69384833 -52459023 - MTE2b LTR MaLR -299 80 31 9 1114 268 313 71 50 chr11 69384852 69384993 -52458863 + RSINE1 SINE B4 9 152 -13 9 1114 330 347 69 49 chr11 69385033 69385087 -52458769 + ID SINE ID 5 61 -163 9 1114 357 24 0 0 chr11 69385087 69385129 -52458727 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1114 330 347 69 49 chr11 69385129 69385277 -52458579 + ID_B1 SINE B4 62 210 -14 9 1114 438 231 210 17 chr11 69385172 69385291 -52458565 + B1F SINE Alu 7 148 -1 9 1114 437 296 51 32 chr11 69385605 69385762 -52458094 - RSINE1 SINE B4 0 165 6 9 1114 24 0 0 0 chr11 69385765 69385789 -52458067 + AT_rich Low_complexity Low_complexity 1 24 0 9 1114 743 198 90 28 chr11 69385808 69385985 -52457871 - B3 SINE B2 -27 189 2 9 1114 290 314 76 0 chr11 69385995 69386113 -52457743 + L2a LINE L2 3046 3172 -254 9 1114 526 241 0 18 chr11 69386114 69386224 -52457632 - PB1D9 SINE Alu 0 120 13 9 1114 593 207 14 167 chr11 69386236 69386451 -52457405 + B3 SINE B2 35 216 0 9 1114 398 307 135 0 chr11 69386510 69386702 -52457154 + L2a LINE L2 3199 3416 -10 9 1114 228 252 202 0 chr11 69386706 69386805 -52457051 + PB1 SINE Alu 2 120 -7 9 1114 1136 62 7 0 chr11 69386816 69386962 -52456894 + B1_Mus2 SINE Alu 1 147 0 9 1114 1202 108 27 0 chr11 69386974 69387160 -52456696 + B2_Mm1a SINE B2 2 192 -1 9 1114 423 132 0 0 chr11 69387843 69387911 -52455945 + (CCA)n Simple_repeat Simple_repeat 3 70 0 9 1114 749 154 7 62 chr11 69387929 69388074 -52455782 + B1_Mur3 SINE Alu 3 139 -10 9 1114 207 0 0 0 chr11 69388078 69388101 -52455755 + (CAA)n Simple_repeat Simple_repeat 3 25 0 9 1114 231 239 79 129 chr11 69388402 69388503 -52455353 + B4 SINE B4 197 292 0 9 1114 495 263 93 0 chr11 69388548 69388666 -52455190 + ID_B1 SINE B4 86 214 -10 9 1114 462 134 65 102 chr11 69388690 69388798 -52455058 + B1_Mur2 SINE Alu 46 149 0 9 1114 862 186 139 0 chr11 69388802 69388974 -52454882 + B3 SINE B2 4 199 -17 9 1114 298 152 98 33 chr11 69388974 69389024 -52454832 + B1_Mur1 SINE Alu 83 138 -11 9 1114 207 0 0 0 chr11 69389024 69389047 -52454809 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1114 406 226 56 56 chr11 69389083 69389191 -52454665 + ID_B1 SINE B4 108 215 -9 9 1114 997 210 45 10 chr11 69389207 69389409 -52454447 + B3 SINE B2 1 209 -7 9 1114 21 0 0 0 chr11 69389409 69389430 -52454426 + AT_rich Low_complexity Low_complexity 1 21 0 9 1114 316 243 204 18 chr11 69389461 69389574 -52454282 + ID_B1 SINE B4 86 219 -5 9 1114 401 227 122 10 chr11 69389577 69389675 -52454181 + B3A SINE B2 3 111 -87 9 1114 278 360 30 10 chr11 69389714 69389815 -52454041 + RLTR18 LTR ERVK 87 189 -427 9 1114 255 323 51 58 chr11 69389881 69390019 -52453837 + RLTR18 LTR ERVK 119 255 -257 9 1114 455 277 191 20 chr11 69390085 69390284 -52453572 + RLTR18 LTR ERVK 384 616 0 9 1114 22 0 0 0 chr11 69390327 69390349 -52453507 + AT_rich Low_complexity Low_complexity 1 22 0 9 1114 541 238 32 8 chr11 69390354 69390374 -52453482 - B1_Mus1 SINE Alu 0 148 129 9 1114 252 0 0 0 chr11 69390374 69390402 -52453454 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1114 541 238 32 8 chr11 69390402 69390504 -52453352 - B1_Mus1 SINE Alu -20 128 24 9 1114 544 237 86 53 chr11 69390710 69390919 -52452937 - ID_B1 SINE B4 -8 216 1 9 1114 436 204 167 0 chr11 69391360 69391468 -52452388 + PB1 SINE Alu 2 127 0 9 1114 648 212 15 15 chr11 69391636 69391770 -52452086 - B1_Mus2 SINE Alu 0 147 14 9 1114 224 300 0 0 chr11 69391784 69391844 -52452012 - PB1D7 SINE Alu -2 118 59 9 1114 211 281 18 0 chr11 69393071 69393128 -52450728 + CT-rich Low_complexity Low_complexity 3 60 0 9 1114 189 329 184 41 chr11 69393128 69393394 -52450462 - L2a LINE L2 -1 3425 3122 9 1114 467 190 129 10 chr11 69393419 69393520 -52450336 + PB1D7 SINE Alu 8 120 0 9 1114 249 219 96 0 chr11 69395771 69395844 -52448012 - MER2 DNA MER2_type -127 218 139 9 1114 428 243 19 0 chr11 69395877 69395984 -52447872 + PB1D9 SINE Alu 11 119 -1 9 1114 307 202 245 53 chr11 69396242 69396336 -52447520 + PB1D10 SINE Alu 5 116 -1 9 1114 805 119 111 7 chr11 69396595 69396730 -52447126 - B1_Mur4 SINE Alu -1 149 1 9 1114 441 216 57 0 chr11 69396764 69396852 -52447004 + PB1D10 SINE Alu 19 111 -6 9 1114 328 264 87 43 chr11 69397200 69397315 -52446541 + PB1D7 SINE Alu 1 120 0 9 1114 537 44 0 0 chr11 69397366 69397434 -52446422 + (TG)n Simple_repeat Simple_repeat 2 69 0 9 1114 282 300 25 0 chr11 69397873 69397953 -52445903 - ID4_ SINE ID -1 82 1 9 1114 198 0 0 0 chr11 69398522 69398544 -52445312 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1114 260 231 0 19 chr11 69399250 69399303 -52444553 + RSINE1 SINE B4 93 144 -21 9 1114 1180 189 49 87 chr11 69400044 69400391 -52443465 - RLTR15 LTR ERVK -25 334 1 9 1114 312 291 20 72 chr11 69400569 69400615 -52443241 + B1F SINE Alu 6 144 0 9 1114 483 212 0 20 chr11 69400615 69400716 -52443140 + ID_B1 SINE B4 121 219 -5 9 1114 313 234 161 45 chr11 69401362 69401474 -52442382 + PB1 SINE Alu 1 125 -2 9 1114 376 325 0 0 chr11 69401476 69401593 -52442263 + PB1D10 SINE Alu 1 117 0 9 1114 726 44 0 11 chr11 69401609 69401701 -52442155 + B1_Mur4 SINE Alu 60 150 0 9 1114 229 254 160 69 chr11 69401612 69401743 -52442113 + MT2B LTR ERVL 217 359 -242 9 1114 319 342 42 34 chr11 69402260 69402378 -52441478 - PB1D7 SINE Alu 0 120 2 9 1114 340 301 0 0 chr11 69403586 69403669 -52440187 - Tigger5 DNA MER2_type 0 2406 2324 9 1114 240 234 0 0 chr11 69403668 69403715 -52440141 + B4A SINE B4 84 130 -162 9 1114 266 324 0 0 chr11 69403761 69403832 -52440024 + ID4 SINE ID 1 71 -12 9 1114 280 252 56 144 chr11 69403922 69404009 -52439847 - Tigger5 DNA MER2_type -2291 115 39 9 1114 228 35 0 0 chr11 69404009 69404038 -52439818 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1114 280 252 56 144 chr11 69404038 69404075 -52439781 - Tigger5 DNA MER2_type -2368 38 2 9 1114 497 282 15 44 chr11 69404432 69404569 -52439287 + B1F2 SINE Alu 6 138 -11 9 1114 398 183 32 0 chr11 69404569 69404662 -52439194 + (ATGGTG)n Simple_repeat Simple_repeat 6 101 0 9 1114 267 293 39 43 chr11 69406590 69406700 -52437156 - PB1D10 SINE Alu -1 119 7 9 1114 800 126 110 7 chr11 69407191 69407327 -52436529 + B1_Mur4 SINE Alu 1 150 0 9 1114 1276 92 43 0 chr11 69407361 69407546 -52436310 + B2_Mm2 SINE B2 3 195 0 9 1114 945 50 0 16 chr11 69407765 69407888 -52435968 - B1_Mm SINE Alu -1 146 26 9 1114 1249 41 0 0 chr11 69407928 69408074 -52435782 + B1_Mus2 SINE Alu 2 147 0 9 1114 410 189 110 11 chr11 69408088 69408179 -52435677 + B1_Mur3 SINE Alu 47 146 -3 9 1114 412 194 9 114 chr11 69408184 69408289 -52435567 + B1_Mur2 SINE Alu 38 131 -18 9 1114 639 254 68 23 chr11 69408333 69408510 -52435346 + B3A SINE B2 1 185 -13 9 1114 278 280 16 41 chr11 69408510 69408633 -52435223 + (CA)n Simple_repeat Simple_repeat 1 120 0 9 1114 293 206 68 14 chr11 69408858 69408932 -52434924 + GA-rich Low_complexity Low_complexity 4 81 0 9 1114 339 294 9 73 chr11 69408936 69409046 -52434810 + PB1 SINE Alu 6 108 -19 9 1114 495 288 101 60 chr11 69409080 69409189 -52434667 + ID_B1 SINE B4 1 209 -83 9 1114 859 60 0 25 chr11 69409189 69409308 -52434548 + B1_Mus1 SINE Alu 33 148 0 9 1114 495 288 101 60 chr11 69409308 69409327 -52434529 + ID_B1 SINE B4 210 249 -43 9 1114 219 36 0 0 chr11 69409327 69409355 -52434501 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1114 247 271 9 86 chr11 69409421 69409526 -52434330 + MT2B LTR ERVL 154 250 -351 1 1114 658 138 18 0 chr11 69409439 69409548 -52434308 + PB1D9 SINE Alu 9 119 -1 1 1114 221 0 0 33 chr11 69409550 69409580 -52434276 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1114 1542 62 0 10 chr11 69409600 69409796 -52434060 + B2_Mm2 SINE B2 2 195 0 1 1114 1173 82 0 0 chr11 69409796 69409943 -52433913 + B1_Mus2 SINE Alu 1 147 0 1 1114 207 0 0 0 chr11 69409946 69409969 -52433887 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1114 1410 75 37 0 chr11 69410048 69410235 -52433621 + B2_Mm2 SINE B2 2 195 0 1 1114 330 232 62 27 chr11 69410338 69410484 -52433372 + L1M5 LINE L1 3804 3954 -2192 1 1114 488 84 42 0 chr11 69410565 69410636 -52433220 + B1_Mus2 SINE Alu 74 147 0 1 1114 1191 172 25 0 chr11 69410870 69411073 -52432783 + B3 SINE B2 8 215 -1 1 1114 292 43 43 0 chr11 69411125 69411171 -52432685 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1114 343 227 43 43 chr11 69411171 69411263 -52432593 + B1F SINE Alu 19 110 -7 1 1114 666 244 31 75 chr11 69411282 69411508 -52432348 - ID_B1 SINE B4 -4 220 5 1 1114 306 333 0 0 chr11 69411517 69411595 -52432261 - ID4_ SINE ID -3 80 3 1 1114 1176 36 0 7 chr11 69411814 69411953 -52431903 + B1_Mm SINE Alu 1 138 -9 1 1114 224 30 0 29 chr11 69411953 69411987 -52431869 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1114 1356 54 0 0 chr11 69411997 69412164 -52431692 + L1Md_T LINE L1 6416 6582 0 1 1114 557 267 26 74 chr11 69412178 69412368 -52431488 + B3A SINE B2 2 182 -16 1 1114 24 0 0 0 chr11 69412385 69412409 -52431447 + AT_rich Low_complexity Low_complexity 1 24 0 1 1114 255 294 54 10 chr11 69412416 69412514 -52431342 + B1F2 SINE Alu 9 107 -43 1 1114 234 297 141 0 chr11 69412633 69412697 -52431159 + B1F SINE Alu 2 74 -75 1 1114 198 0 0 0 chr11 69413566 69413588 -52430268 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1114 262 254 0 0 chr11 69414458 69414513 -52429343 - ID2 SINE ID -28 55 1 1 1114 207 0 0 0 chr11 69417517 69417540 -52426316 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1114 21 71 0 0 chr11 69418509 69418551 -52425305 + GC_rich Low_complexity Low_complexity 1 42 0 1 1114 270 0 0 0 chr11 69419620 69419650 -52424206 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1114 516 181 0 0 chr11 69420233 69420249 -52423607 + polypurine Low_complexity Low_complexity 2 17 0 1 1114 1216 67 61 0 chr11 69420249 69420413 -52423443 + B2_Mm1t SINE B2 3 176 -17 1 1114 516 181 0 0 chr11 69420413 69420501 -52423355 + GA-rich Low_complexity Low_complexity 18 105 0 1 1114 355 244 77 0 chr11 69420586 69420664 -52423192 - B1F2 SINE Alu -58 91 8 1 1114 207 88 0 0 chr11 69420700 69420734 -52423122 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1114 308 257 65 114 chr11 69420739 69420862 -52422994 - PB1D10 SINE Alu 0 117 1 1 1114 449 292 25 0 chr11 69420993 69421113 -52422743 + PB1 SINE Alu 3 125 -2 1 1114 471 35 0 0 chr11 69421113 69421170 -52422686 + (GGA)n Simple_repeat Simple_repeat 3 59 0 1 1114 241 289 134 0 chr11 69421183 69421280 -52422576 + PB1D10 SINE Alu 1 110 -7 1 1114 288 70 0 0 chr11 69421289 69421332 -52422524 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1114 288 189 40 13 chr11 69421340 69421415 -52422441 + Lx8 LINE L1 7396 7472 -1 1 1114 378 0 0 0 chr11 69421432 69421474 -52422382 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1114 1152 62 14 0 chr11 69421841 69421986 -52421870 - B1_Mus2 SINE Alu 0 147 1 1 1114 237 83 0 0 chr11 69422138 69422174 -52421682 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1114 387 0 0 0 chr11 69422308 69422351 -52421505 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1 1114 260 290 14 0 chr11 69422448 69422517 -52421339 + ID4_ SINE ID 3 72 -11 1 1114 195 42 0 0 chr11 69422708 69422732 -52421124 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1114 424 274 66 33 chr11 69422734 69422855 -52421001 - RSINE1 SINE B4 -40 125 1 1 1114 262 262 0 32 chr11 69422950 69423013 -52420843 + ID4 SINE ID 10 70 -13 1 1114 205 325 37 24 chr11 69423316 69423398 -52420458 - MIRb SINE MIR 0 268 186 1 1114 505 284 0 8 chr11 69423398 69423515 -52420341 + B1_Mur2 SINE Alu 29 144 -5 1 1114 1018 45 38 0 chr11 69423677 69423809 -52420047 - B1_Mus1 SINE Alu -1 147 11 1 1114 275 224 32 20 chr11 69423887 69423973 -52419883 + B1_Mur1 SINE Alu 17 131 -18 1 1114 680 270 99 5 chr11 69424023 69424224 -52419632 + ID_B1 SINE B4 5 224 0 1 1114 204 277 0 0 chr11 69424341 69424388 -52419468 + MIRb SINE MIR 214 260 -8 1 1114 270 254 0 29 chr11 69424388 69424457 -52419399 + GA-rich Low_complexity Low_complexity 3 69 0 1 1114 1090 84 28 0 chr11 69425020 69425163 -52418693 - B1_Mm SINE Alu 0 147 1 1 1114 740 149 95 22 chr11 69425216 69425353 -52418503 - B1_Mur1 SINE Alu -1 148 2 1 1114 938 259 25 5 chr11 69425370 69425568 -52418288 - B3 SINE B2 -14 202 1 1 1114 506 192 151 8 chr11 69425569 69425695 -52418161 - ID_B1 SINE B4 -3 221 78 1 1114 347 195 181 47 chr11 69425700 69425805 -52418051 - B1F SINE Alu -1 116 2 1 1114 232 317 42 48 chr11 69425806 69425960 -52417896 + L2b LINE L2 3241 3420 -6 1 1114 853 257 13 72 chr11 69426257 69426492 -52417364 + ID_B1 SINE B4 1 221 -3 1 1114 634 193 0 0 chr11 69426505 69426614 -52417242 + B1_Mur4 SINE Alu 6 114 -36 1 1114 21 36 0 0 chr11 69426650 69426678 -52417178 + AT_rich Low_complexity Low_complexity 1 28 0 1 1114 342 0 0 0 chr11 69426697 69426735 -52417121 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1114 528 184 7 88 chr11 69426770 69426906 -52416950 + B1_Mur1 SINE Alu 3 131 -18 1 1114 264 272 17 44 chr11 69427474 69427578 -52416278 - ID4_ SINE ID -42 110 17 1 1114 219 69 0 0 chr11 69427708 69427737 -52416119 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1114 1195 35 14 0 chr11 69427737 69427881 -52415975 - B1_Mus2 SINE Alu 0 147 2 1 1114 216 0 0 0 chr11 69427984 69428008 -52415848 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1114 264 319 49 68 chr11 69428015 69428298 -52415558 + L2a LINE L2 3098 3425 -1 1 1114 655 257 36 0 chr11 69428320 69428460 -52415396 - ID_B1 SINE B4 0 224 80 1 1114 432 239 9 18 chr11 69428719 69428830 -52415026 - PB1D10 SINE Alu -1 116 7 1 1114 453 36 0 0 chr11 69429672 69429727 -52414129 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1114 236 268 252 7 chr11 69430404 69430547 -52413309 + MIRb SINE MIR 6 183 -85 1 1114 245 275 62 61 chr11 69431744 69431878 -52411978 + MIR SINE MIR 77 218 -50 1 1114 436 239 23 0 chr11 69431981 69432069 -52411787 + PB1D10 SINE Alu 21 110 -7 1 1114 274 341 12 0 chr11 69432108 69432193 -52411663 + RSINE1 SINE B4 76 161 -4 1 1114 180 111 0 0 chr11 69432195 69432222 -52411634 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1114 574 165 68 0 chr11 69432289 69432392 -52411464 + B1_Mur1 SINE Alu 1 110 -39 1 1114 335 283 9 36 chr11 69432410 69432520 -52411336 - B3A SINE B2 -35 163 57 1 1114 400 227 164 0 chr11 69432531 69432641 -52411215 + B1_Mur1 SINE Alu 22 149 0 1 1114 792 251 72 82 chr11 69432664 69432872 -52410984 + B3 SINE B2 6 211 -5 1 1114 23 33 0 0 chr11 69432872 69432902 -52410954 + AT_rich Low_complexity Low_complexity 1 30 0 1 1114 793 182 73 0 chr11 69432911 69433048 -52410808 + B1_Mur2 SINE Alu 2 148 -1 1 1114 378 0 0 0 chr11 69433110 69433152 -52410704 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1114 1325 56 0 0 chr11 69433152 69433312 -52410544 - B2_Mm1a SINE B2 -33 160 1 1 1114 766 153 293 24 chr11 69433385 69433541 -52410315 + B3 SINE B2 1 202 -14 1 1114 756 86 0 0 chr11 69433541 69433646 -52410210 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 1 1114 820 225 58 16 chr11 69433676 69433866 -52409990 + B3 SINE B2 6 203 -13 1 1114 207 0 0 0 chr11 69433873 69433896 -52409960 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1114 523 292 146 53 chr11 69433974 69434177 -52409679 + B4A SINE B4 3 230 -62 1 1114 417 39 0 0 chr11 69434177 69434228 -52409628 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1114 523 292 146 53 chr11 69434228 69434270 -52409586 + B4A SINE B4 231 271 -21 1 1114 518 231 13 83 chr11 69434354 69434510 -52409346 + B1F SINE Alu 5 149 0 1 1114 220 318 101 76 chr11 69434535 69434654 -52409202 + FAM SINE Alu 140 261 -50 1 1114 255 287 59 103 chr11 69434601 69434619 -52409237 + MT2B LTR ERVL 151 277 -321 1 1114 438 296 54 31 chr11 69434620 69434749 -52409107 + B1_Mur3 SINE Alu 1 132 -17 1 1114 427 216 9 38 chr11 69434747 69434772 -52409084 + ID SINE ID 60 81 -143 1 1114 610 90 22 2 chr11 69434772 69434880 -52408976 + B1_Mus2 SINE Alu 2 117 0 1 1114 180 0 0 0 chr11 69434889 69434909 -52408947 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1114 360 213 115 21 chr11 69435285 69435381 -52408475 + B1_Mus2 SINE Alu 43 147 0 1 1114 231 36 0 0 chr11 69436723 69436751 -52407105 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 1 1114 835 145 7 35 chr11 69436809 69436952 -52406904 - B1_Mus1 SINE Alu -1 147 9 1 1114 213 39 0 0 chr11 69437500 69437526 -52406330 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1114 25 0 0 0 chr11 69437784 69437809 -52406047 + AT_rich Low_complexity Low_complexity 1 25 0 1 1114 468 130 29 0 chr11 69437829 69437898 -52405958 - B2_Mm2 SINE B2 -124 71 1 1 1114 269 64 0 41 chr11 69437911 69437960 -52405896 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1114 1118 68 0 75 chr11 69437960 69438059 -52405797 - B1_Mus1 SINE Alu 0 148 61 1 1114 1562 43 5 0 chr11 69438059 69438245 -52405611 + B2_Mm1t SINE B2 3 189 -4 1 1114 1118 68 0 75 chr11 69438245 69438304 -52405552 - B1_Mus1 SINE Alu -88 60 2 1 1114 742 153 28 55 chr11 69438307 69438452 -52405404 - B1_Mur1 SINE Alu 0 149 9 1 1114 1173 82 0 0 chr11 69438664 69438811 -52405045 - B1_Mus2 SINE Alu 0 147 1 1 1114 1405 71 11 0 chr11 69438837 69439021 -52404835 - B2_Mm1t SINE B2 -7 186 1 1 1114 932 139 250 0 chr11 69439045 69439217 -52404639 - B3 SINE B2 0 216 2 1 1114 392 0 21 0 chr11 69439220 69439268 -52404588 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1 1114 329 222 62 0 chr11 69439318 69439399 -52404457 + B3 SINE B2 129 214 -2 1 1114 550 155 0 10 chr11 69439390 69439488 -52404368 - B2_Mm2 SINE B2 -13 182 86 1 1114 1681 31 0 0 chr11 69439535 69439727 -52404129 + B2_Mm1a SINE B2 2 193 0 1 1114 485 213 178 58 chr11 69439741 69439915 -52403941 + B2_Mm2 SINE B2 1 195 0 1 1114 358 268 34 85 chr11 69439936 69440144 -52403712 + B3 SINE B2 2 215 -1 1 1114 1203 61 0 7 chr11 69440151 69440299 -52403557 + B1_Mus1 SINE Alu 1 147 -1 1 1114 27 0 0 0 chr11 69440399 69440426 -52403430 + AT_rich Low_complexity Low_complexity 1 27 0 1 1114 345 161 0 0 chr11 69440474 69440530 -52403326 - B3 SINE B2 -159 57 2 1 1114 440 131 0 0 chr11 69440674 69440735 -52403121 + B1_Mus1 SINE Alu 1 61 -87 1 1114 569 56 133 0 chr11 69440738 69440828 -52403028 - B2_Mm1t SINE B2 -1 192 91 1 1114 1235 95 5 48 chr11 69440856 69441044 -52402812 - B2_Mm2 SINE B2 -14 181 2 1 1114 515 108 145 0 chr11 69441045 69441128 -52402728 + B1_Mus2 SINE Alu 53 147 0 1 1114 216 67 0 0 chr11 69441129 69441159 -52402697 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1114 1172 89 41 12 chr11 69441192 69441362 -52402494 + B2_Mm2 SINE B2 2 176 -19 1 1114 479 244 21 41 chr11 69441387 69441572 -52402284 + B4A SINE B4 7 228 -64 1 1114 504 257 0 0 chr11 69441574 69441687 -52402169 + PB1D9 SINE Alu 3 115 -5 1 1114 878 291 91 35 chr11 69441936 69442278 -52401578 - MER21B LTR ERV1 -119 744 384 1 1114 267 236 0 18 chr11 69442623 69442679 -52401177 - tRNA-Ala-GCA tRNA tRNA -16 59 5 1 1114 261 217 0 0 chr11 69442691 69442756 -52401100 - PB1 SINE Alu -8 141 79 1 1114 325 315 6 0 chr11 69442894 69442985 -52400871 - PB1D10 SINE Alu -20 100 7 1 1114 189 107 0 0 chr11 69442996 69443024 -52400832 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1 1114 1180 64 0 0 chr11 69443032 69443172 -52400684 - B1_Mm SINE Alu -6 141 2 1 1114 720 161 92 8 chr11 69443177 69443308 -52400548 - B1_Mus1 SINE Alu -6 142 1 1 1114 180 0 0 0 chr11 69443418 69443438 -52400418 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1114 769 198 54 30 chr11 69443442 69443609 -52400247 - B2_Mm2 SINE B2 -23 172 2 1 1114 616 218 16 8 chr11 69443616 69443741 -52400115 - B3 SINE B2 0 216 91 1 1114 492 289 16 8 chr11 69443789 69443911 -52399945 - RSINE1 SINE B4 -37 128 6 1 1114 490 204 27 36 chr11 69443926 69444038 -52399818 - B1_Mur2 SINE Alu 0 149 39 1 1114 808 180 43 7 chr11 69444070 69444210 -52399646 - B1_Mur2 SINE Alu -2 147 3 1 1114 572 211 17 26 chr11 69444242 69444359 -52399497 + B1_Mur1 SINE Alu 2 117 -32 1 1114 1194 130 38 0 chr11 69445260 69445445 -52398411 - B2_Mm2 SINE B2 -2 193 2 1 1114 299 330 89 0 chr11 69445483 69445595 -52398261 - RSINE1 SINE B4 0 165 44 1 1114 613 234 21 35 chr11 69445742 69445884 -52397972 + ID_B1 SINE B4 85 224 0 1 1114 225 0 0 0 chr11 69445884 69445909 -52397947 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1114 203 191 0 16 chr11 69446517 69446581 -52397275 + (CGG)n Simple_repeat Simple_repeat 2 64 0 1 1114 29 47 0 0 chr11 69446612 69446655 -52397201 + GC_rich Low_complexity Low_complexity 1 43 0 1 1114 26 50 0 0 chr11 69446673 69446713 -52397143 + GC_rich Low_complexity Low_complexity 1 40 0 1 1114 396 40 0 0 chr11 69447198 69447248 -52396608 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1114 332 339 64 0 chr11 69448707 69448816 -52395040 + PB1D10 SINE Alu 2 117 0 1 1114 213 132 0 0 chr11 69448941 69448979 -52394877 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1114 429 231 43 61 chr11 69448989 69449104 -52394752 - PB1D9 SINE Alu -7 113 1 1 1114 285 275 42 92 chr11 69449688 69449808 -52394048 - PB1D10 SINE Alu -3 114 1 1 1114 324 323 21 0 chr11 69449724 69449820 -52394036 - ID_B1 SINE B4 -57 167 70 1 1114 764 87 10 0 chr11 69449834 69449937 -52393919 - B1_Mus1 SINE Alu -1 147 44 1 1114 301 254 14 27 chr11 69449881 69449954 -52393902 - RLTR25B LTR ERVK -530 498 427 1 1114 283 132 130 117 chr11 69449941 69450018 -52393838 - B1_Mur4 SINE Alu -2 148 71 1 1114 225 317 0 0 chr11 69450145 69450205 -52393651 + CT-rich Low_complexity Low_complexity 3 62 0 1 1114 411 250 20 40 chr11 69450229 69450329 -52393527 - B1F SINE Alu -12 137 40 1 1114 252 264 83 0 chr11 69450569 69450641 -52393215 - ID2 SINE ID -3 80 3 1 1114 668 133 147 8 chr11 69450686 69450815 -52393041 - B1_Mus1 SINE Alu 0 148 2 1 1114 201 154 0 0 chr11 69450826 69450865 -52392991 + CT-rich Low_complexity Low_complexity 2 40 0 1 1114 451 301 44 0 chr11 69450920 69451033 -52392823 - B1_Mur1 SINE Alu -11 138 21 1 1114 701 223 37 43 chr11 69451293 69451457 -52392399 + RSINE1 SINE B4 3 165 0 1 1114 1317 85 26 5 chr11 69451480 69451669 -52392187 - B2_Mm1a SINE B2 0 193 1 1 1114 588 245 121 8 chr11 69451696 69451876 -52391980 + B3 SINE B2 1 186 -9 1 1114 345 254 48 110 chr11 69451878 69452024 -52391832 + L1M4 LINE L1 5026 5162 -984 1 1114 1185 64 0 0 chr11 69452028 69452169 -52391687 + B1_Mus2 SINE Alu 1 141 -6 1 1114 1262 48 0 0 chr11 69453175 69453322 -52390534 - B1_Mus2 SINE Alu 0 147 1 1 1114 415 138 43 0 chr11 69453366 69453460 -52390396 + L1_Mus3 LINE L1 6541 6638 0 1 1114 1201 68 0 0 chr11 69453463 69453611 -52390245 + B1_Mus1 SINE Alu 1 148 0 1 1114 189 175 0 0 chr11 69453611 69453651 -52390205 + A-rich Low_complexity Low_complexity 1 40 0 1 1114 376 229 0 0 chr11 69454100 69454170 -52389686 - ID4_ SINE ID -13 70 1 1 1114 346 284 22 11 chr11 69454170 69454259 -52389597 + PB1 SINE Alu 27 116 -11 1 1114 1428 76 49 0 chr11 69454261 69454446 -52389410 - B2_Mm2 SINE B2 0 195 2 1 1114 216 0 0 0 chr11 69454487 69454511 -52389345 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1114 277 237 85 0 chr11 69454557 69454616 -52389240 - RSINE1 SINE B4 -85 80 17 1 1114 602 229 64 7 chr11 69455274 69455415 -52388441 - B1_Mur1 SINE Alu 0 149 1 1 1114 237 327 135 9 chr11 69456027 69456138 -52387718 - B4A SINE B4 -48 244 120 1 1114 352 308 67 0 chr11 69456141 69456245 -52387611 + B3A SINE B2 88 198 0 1 1114 243 0 0 0 chr11 69456257 69456284 -52387572 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1114 643 125 0 10 chr11 69456284 69456381 -52387475 - B1_Mus2 SINE Alu -43 104 9 1 1114 402 176 0 149 chr11 69456285 69456392 -52387464 - MT2B LTR ERVL -343 258 168 1 1114 293 268 92 10 chr11 69456537 69456635 -52387221 - B1F1 SINE Alu -35 114 9 1 1114 981 119 23 5 chr11 69456656 69456834 -52387022 - B2_Mm2 SINE B2 0 193 2 1 1114 1141 74 0 45 chr11 69456866 69457022 -52386834 + B1_Mur4 SINE Alu 2 150 0 1 1114 804 196 194 6 chr11 69457119 69457299 -52386557 - B3 SINE B2 -1 215 2 1 1114 1204 62 0 0 chr11 69457639 69457785 -52386071 + B1_Mus2 SINE Alu 2 147 0 1 1114 507 212 8 25 chr11 69457813 69457934 -52385922 - PB1D9 SINE Alu 0 120 2 1 1114 1620 128 207 11 chr11 69457980 69458474 -52385382 - ORR1A2 LTR MaLR -8 386 1 1 1114 273 57 0 0 chr11 69458474 69458509 -52385347 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1 1114 1172 64 0 0 chr11 69458512 69458653 -52385203 - B1_Mm SINE Alu -6 141 1 1 1114 953 128 76 27 chr11 69458653 69458836 -52385020 - B2_Mm2 SINE B2 -1 194 2 1 1114 5614 171 68 52 chr11 69458840 69459250 -52384606 - ORR1A2-int LTR MaLR -539 1253 856 1 1114 999 47 8 8 chr11 69459250 69459378 -52384478 - B1_Mus1 SINE Alu -19 129 2 1 1114 5614 171 68 52 chr11 69459378 69460198 -52383658 - ORR1A2-int LTR MaLR -937 855 3 1 1114 711 73 227 0 chr11 69460208 69460318 -52383538 - B1_Mus1 SINE Alu 0 148 14 1 1114 1958 101 17 3 chr11 69460309 69460596 -52383260 - ORR1A2 LTR MaLR -36 291 1 1 1114 382 271 12 0 chr11 69460596 69460680 -52383176 - B1_Mur3 SINE Alu -64 85 1 1 1114 246 32 0 0 chr11 69460709 69460740 -52383116 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 1 1114 1549 35 0 0 chr11 69460746 69460920 -52382936 - B2_Mm1a SINE B2 -18 175 2 1 1114 551 184 34 26 chr11 69460953 69461070 -52382786 - PB1D9 SINE Alu -2 118 1 1 1114 1305 94 72 0 chr11 69461124 69461305 -52382551 - B2_Mm2 SINE B2 0 195 2 1 1114 1344 85 10 21 chr11 69461316 69461508 -52382348 - B2_Mm1a SINE B2 -3 190 1 1 1114 751 287 5 22 chr11 69461509 69461694 -52382162 - ID_B1 SINE B4 -41 183 2 1 1114 270 0 0 0 chr11 69462985 69463015 -52380841 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1114 1218 36 0 0 chr11 69463017 69463157 -52380699 - B1_Mm SINE Alu -6 141 2 1 1114 1180 48 0 14 chr11 69463456 69463604 -52380252 - B1_Mus2 SINE Alu 0 147 2 1 1114 620 250 7 39 chr11 69463627 69463781 -52380075 - B1_Mur1 SINE Alu 0 149 1 1 1114 265 339 136 8 chr11 69463810 69463935 -52379921 - B1F2 SINE Alu -8 141 1 1 1114 21 0 0 0 chr11 69464531 69464552 -52379304 + GC_rich Low_complexity Low_complexity 1 21 0 1 1114 1173 75 0 0 chr11 69465277 69465423 -52378433 + B1_Mus2 SINE Alu 2 147 0 1 1114 360 194 12 62 chr11 69467441 69467535 -52376321 + B1_Mur4 SINE Alu 2 89 -31 1 1114 504 214 42 59 chr11 69467562 69467681 -52376175 + B1_Mur1 SINE Alu 27 143 -6 1 1114 399 36 23 0 chr11 69467741 69467806 -52376050 + B1_Mus2 SINE Alu 53 147 0 1 1114 250 281 31 15 chr11 69467899 69467964 -52375892 + RSINE1 SINE B4 85 150 -15 1 1115 198 0 0 0 chr11 69471164 69471186 -52372670 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1115 534 289 25 0 chr11 69471707 69471828 -52372028 + RSINE1 SINE B4 2 125 -40 1 1115 1176 75 0 0 chr11 69471870 69472017 -52371839 + B1_Mus1 SINE Alu 2 148 0 1 1115 786 47 137 86 chr11 69472922 69473061 -52370795 + B1_Mus2 SINE Alu 2 147 0 1 1115 1163 114 0 28 chr11 69473089 69473270 -52370586 + B2_Mm2 SINE B2 6 181 -14 1 1115 1219 14 35 0 chr11 69473295 69473437 -52370419 - B1_Mm SINE Alu 0 147 1 1 1115 327 209 4 33 chr11 69473462 69473562 -52370294 + PB1D9 SINE Alu 57 149 0 1 1115 606 215 85 0 chr11 69473568 69473698 -52370158 + B1_Mur1 SINE Alu 2 142 -7 1 1115 822 177 223 0 chr11 69473698 69473873 -52369983 + B3 SINE B2 3 216 0 1 1115 675 268 62 23 chr11 69473976 69474152 -52369704 + B3A SINE B2 1 183 -15 1 1115 1364 95 11 0 chr11 69474201 69474390 -52369466 + B2_Mm1t SINE B2 3 193 0 1 1115 412 241 104 26 chr11 69474408 69474523 -52369333 - RSINE1 SINE B4 -8 157 34 1 1115 1515 62 0 45 chr11 69474667 69474868 -52368988 - B2_Mm2 SINE B2 -3 192 1 1 1115 579 176 76 56 chr11 69474884 69475028 -52368828 - B1_Mus1 SINE Alu 0 148 2 1 1115 451 145 13 0 chr11 69475064 69475140 -52368716 - LSU-rRNA_Hsa rRNA rRNA -2 5033 4957 1 1115 250 296 21 54 chr11 69475278 69475371 -52368485 + MT2B2 LTR ERVL 169 258 -326 1 1115 451 247 21 0 chr11 69475288 69475381 -52368475 + B1F SINE Alu 23 117 -32 1 1115 284 298 51 26 chr11 69475381 69475405 -52368451 + ID_B1 SINE B4 104 223 -1 1 1115 864 109 0 0 chr11 69475499 69475618 -52368238 + B1_Mus1 SINE Alu 2 120 -28 1 1115 763 95 1 4 chr11 69476604 69476723 -52367133 + B2_Mm2 SINE B2 1 116 -77 1 1115 300 248 142 9 chr11 69479921 69480027 -52363829 + B1_Mur4 SINE Alu 19 138 -12 1 1115 992 104 14 27 chr11 69480096 69480244 -52363612 - B1_Mus2 SINE Alu 0 147 2 1 1115 213 167 62 0 chr11 69480828 69480876 -52362980 + A-rich Low_complexity Low_complexity 3 53 0 1 1115 242 326 39 39 chr11 69483477 69483579 -52360277 - ID_B1 SINE B4 -2 222 121 1 1115 387 257 0 7 chr11 69483500 69483591 -52360265 - B1_Mur3 SINE Alu -31 118 33 1 1115 32 0 0 0 chr11 69486658 69486690 -52357166 + AT_rich Low_complexity Low_complexity 1 32 0 1 1115 629 311 136 9 chr11 69488303 69488517 -52355339 - B4 SINE B4 -50 242 2 1 1115 224 190 288 12 chr11 69488608 69488688 -52355168 + B1_Mur1 SINE Alu 21 122 -27 1 1115 1026 215 19 0 chr11 69488727 69488932 -52354924 + B3 SINE B2 1 209 -7 1 1115 480 284 77 6 chr11 69488959 69489129 -52354727 + MIR SINE MIR 29 210 -52 1 1115 345 194 229 19 chr11 69489264 69489369 -52354487 - RSINE1 SINE B4 -11 154 28 1 1115 693 256 7 0 chr11 69489940 69490077 -52353779 + RSINE1 SINE B4 24 161 -4 1 1115 185 333 129 0 chr11 69490398 69490491 -52353365 + L2a LINE L2 3316 3420 -6 1 1115 1229 73 67 6 chr11 69491021 69491200 -52352656 + B2_Mm2 SINE B2 4 193 -2 1 1115 1193 48 0 14 chr11 69491304 69491451 -52352405 + B1_Mus1 SINE Alu 4 148 0 1 1115 405 0 0 0 chr11 69492698 69492743 -52351113 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1115 210 143 0 0 chr11 69492781 69492816 -52351040 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1115 282 274 82 12 chr11 69493236 69493321 -52350535 - PB1D10 SINE Alu -13 104 14 1 1115 1204 68 0 0 chr11 69493348 69493494 -52350362 + B1_Mus1 SINE Alu 1 146 -2 1 1115 207 0 0 0 chr11 69493497 69493520 -52350336 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 1115 204 158 0 0 chr11 69494084 69494122 -52349734 + CT-rich Low_complexity Low_complexity 2 39 0 1 1115 241 320 0 19 chr11 69495322 69495423 -52348433 + C-rich Low_complexity Low_complexity 1 99 0 1 1115 201 139 0 44 chr11 69495801 69495826 -52348030 + A-rich Low_complexity Low_complexity 1 24 0 1 1115 1255 34 7 0 chr11 69495826 69495972 -52347884 + B1_Mus2 SINE Alu 1 147 0 1 1115 201 139 0 44 chr11 69495972 69495991 -52347865 + A-rich Low_complexity Low_complexity 25 43 0 1 1115 728 167 71 14 chr11 69496106 69496246 -52347610 - B1_Mur1 SINE Alu -1 148 1 1 1115 356 283 49 34 chr11 69497052 69497186 -52346670 - PB1D7 SINE Alu -2 147 14 1 1115 381 22 0 0 chr11 69500955 69501001 -52342855 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1115 360 0 0 0 chr11 69501215 69501255 -52342601 + (CTATA)n Simple_repeat Simple_repeat 1 40 0 2 1115 798 158 30 0 chr11 69501381 69501514 -52342342 + B1_Mur3 SINE Alu 13 149 0 3 1115 581 307 86 4 chr11 69501520 69501765 -52342091 + L1MB8 LINE L1 5725 5989 -189 4 1115 513 282 87 12 chr11 69501782 69501963 -52341893 - ID_B1 SINE B4 -18 274 81 5 1115 494 244 23 47 chr11 69501972 69502101 -52341755 - B1_Mus1 SINE Alu -9 139 14 6 1115 1181 62 14 0 chr11 69502219 69502365 -52341491 - B1_Mus1 SINE Alu 0 148 1 7 1115 299 263 79 0 chr11 69502413 69502489 -52341367 + ID4_ SINE ID 2 83 0 8 1115 1113 83 14 14 chr11 69502531 69502677 -52341179 + B1_Mus2 SINE Alu 1 146 -1 9 1115 182 37 37 0 chr11 69502749 69502776 -52341080 + (CCCCCA)n Simple_repeat Simple_repeat 5 32 0 1 1115 685 89 8 8 chr11 69502932 69503057 -52340799 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 1115 360 0 0 0 chr11 69503057 69503096 -52340760 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1115 252 288 40 40 chr11 69503276 69503352 -52340504 + L2b LINE L2 3269 3344 -31 1 1115 349 183 38 129 chr11 69503500 69503632 -52340224 - PB1D9 SINE Alu 0 120 1 1 1115 264 191 30 60 chr11 69504248 69504315 -52339541 - RMER30 DNA MER1_type -1 201 137 1 1115 223 216 41 34 chr11 69505263 69505331 -52338525 + MIR SINE MIR 44 121 -155 1 1115 1031 75 0 33 chr11 69505616 69505768 -52338088 - B1_Mm SINE Alu 0 147 1 1 1115 518 318 211 21 chr11 69505780 69506248 -52337608 + L2 LINE L2 1964 2545 -874 1 1115 488 292 0 0 chr11 69506248 69506368 -52337488 + PB1 SINE Alu 1 120 -7 1 1115 518 318 211 21 chr11 69506368 69506529 -52337327 + L2 LINE L2 2546 2712 -707 1 1115 339 243 0 26 chr11 69507316 69507392 -52336464 - MER94 DNA AcHobo -4 130 57 2 1115 1154 69 14 0 chr11 69507393 69507538 -52336318 + B1_Mm SINE Alu 1 147 0 2 1115 451 173 13 0 chr11 69507558 69507633 -52336223 + ID4 SINE ID 2 77 -6 2 1115 183 170 0 0 chr11 69507643 69507690 -52336166 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1115 1218 68 0 0 chr11 69507884 69508032 -52335824 + B1_Mus1 SINE Alu 1 148 0 2 1115 212 292 162 22 chr11 69508042 69508204 -52335652 + MIRc SINE MIR 33 216 -52 2 1115 405 102 0 0 chr11 69508492 69508551 -52335305 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1115 226 268 0 23 chr11 69509304 69509392 -52334464 + G-rich Low_complexity Low_complexity 2 87 0 2 1115 715 205 6 43 chr11 69509591 69509754 -52334102 - MTD LTR MaLR -240 179 23 2 1115 211 186 34 0 chr11 69509801 69509860 -52333996 + T-rich Low_complexity Low_complexity 2 62 0 2 1115 1012 78 0 66 chr11 69509867 69510019 -52333837 - B1_Mur4 SINE Alu 0 150 9 3 1115 1423 53 26 16 chr11 69510056 69510246 -52333610 + B2_Mm1t SINE B2 2 193 0 3 1115 1103 116 0 7 chr11 69510415 69510563 -52333293 - B1_Mus1 SINE Alu 0 148 2 3 1115 195 42 0 0 chr11 69510576 69510600 -52333256 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1115 1070 64 36 0 chr11 69510600 69510740 -52333116 - B1_Mus2 SINE Alu -2 145 1 3 1115 296 175 0 123 chr11 69510741 69510806 -52333050 + RMER4A LTR ERVK 375 431 -35 3 1115 818 113 0 0 chr11 69510805 69510920 -52332936 + B1_Mus1 SINE Alu 34 148 0 3 1115 331 117 33 16 chr11 69510971 69511032 -52332824 + RMER4A LTR ERVK 308 369 -97 3 1115 326 227 87 43 chr11 69511289 69511404 -52332452 - MLT1A1 LTR MaLR -286 122 3 3 1115 206 178 0 22 chr11 69511716 69511737 -52332119 + T-rich Low_complexity Low_complexity 29 49 0 3 1115 1181 63 0 0 chr11 69511737 69511879 -52331977 - B1_Mus1 SINE Alu -5 143 2 4 1115 206 178 0 22 chr11 69511879 69511903 -52331953 + T-rich Low_complexity Low_complexity 5 28 0 4 1115 1112 120 0 115 chr11 69511906 69511967 -52331889 - B2_Mm2 SINE B2 -2 193 154 4 1115 288 0 0 0 chr11 69511967 69511999 -52331857 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1115 1112 120 0 115 chr11 69511999 69512154 -52331702 - B2_Mm2 SINE B2 -42 153 2 4 1115 934 242 19 5 chr11 69512164 69512376 -52331480 - B3 SINE B2 0 216 2 4 1115 1631 21 10 10 chr11 69512678 69512870 -52330986 + B2_Mm1a SINE B2 2 193 0 4 1115 1185 82 0 0 chr11 69512951 69513098 -52330758 + B1_Mus2 SINE Alu 1 147 0 4 1115 279 267 17 0 chr11 69514455 69514515 -52329341 - MER81 DNA AcHobo -10 104 44 4 1115 1199 44 0 0 chr11 69514879 69515016 -52328840 + B1_Mm SINE Alu 1 137 -10 4 1115 513 0 0 0 chr11 69515019 69515076 -52328780 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 4 1115 272 279 84 98 chr11 69515470 69515551 -52328305 - MT2B LTR ERVL -236 365 167 5 1115 615 186 8 25 chr11 69515551 69515672 -52328184 - B1_Mur1 SINE Alu -28 121 3 5 1115 1301 61 60 22 chr11 69515745 69515930 -52327926 - B2_Mm1a SINE B2 0 193 2 5 1115 331 302 95 95 chr11 69516192 69516282 -52327574 - L1MC4 LINE L1 -426 7616 7554 5 1115 1683 21 5 0 chr11 69516282 69516474 -52327382 - B2_Mm1t SINE B2 0 193 1 5 1115 331 302 95 95 chr11 69516474 69516709 -52327147 - L1MC4 LINE L1 -489 7553 7291 5 1115 1288 34 0 0 chr11 69516709 69516856 -52327000 + B1_Mus1 SINE Alu 2 148 0 5 1115 2174 240 218 56 chr11 69516916 69517125 -52326731 - RLTR25B LTR ERVK 0 1028 723 5 1115 1678 26 0 5 chr11 69517125 69517319 -52326537 + B2_Mm1a SINE B2 1 193 0 5 1115 2174 240 218 56 chr11 69517319 69517984 -52325872 - RLTR25B LTR ERVK -306 722 12 5 1115 258 254 16 33 chr11 69518200 69518261 -52325595 - PB1D10 SINE Alu -57 60 1 5 1115 918 129 12 12 chr11 69518281 69518454 -52325402 + CT-rich Low_complexity Low_complexity 5 177 0 5 1115 274 290 96 8 chr11 69518469 69518594 -52325262 - L1MC4 LINE L1 -1069 6813 6678 5 1115 286 312 84 52 chr11 69518619 69518832 -52325024 + MER47B DNA MER2_type 27 246 -172 6 1115 1232 54 0 0 chr11 69519105 69519252 -52324604 + B1_Mm SINE Alu 1 147 0 6 1115 270 81 0 0 chr11 69519253 69519290 -52324566 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1115 1157 63 146 0 chr11 69519290 69519448 -52324408 - B2_Mm2 SINE B2 -14 181 1 6 1115 240 32 0 0 chr11 69519512 69519525 -52324331 + (T)n Simple_repeat Simple_repeat 1 13 0 6 1115 1147 50 43 0 chr11 69519525 69519666 -52324190 - B1_Mus2 SINE Alu 0 147 1 6 1115 240 32 0 0 chr11 69519666 69519683 -52324173 + (T)n Simple_repeat Simple_repeat 1 17 0 6 1115 1239 48 0 7 chr11 69519720 69519868 -52323988 + B1_Mus2 SINE Alu 1 147 0 6 1115 198 0 0 0 chr11 69519953 69519975 -52323881 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 1115 269 259 121 35 chr11 69520602 69520718 -52323138 + MT2B LTR ERVL 139 264 -337 6 1115 596 134 188 0 chr11 69520629 69520741 -52323115 + B1_Mur4 SINE Alu 6 138 -12 7 1115 222 37 0 0 chr11 69520741 69520768 -52323088 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 7 1115 338 239 61 52 chr11 69521235 69521307 -52322549 - URR1B DNA MER1_type -28 197 124 7 1115 1175 68 0 13 chr11 69521307 69521457 -52322399 - B1_Mus1 SINE Alu 0 148 1 7 1115 338 239 61 52 chr11 69521457 69521498 -52322358 - URR1B DNA MER1_type -102 123 83 7 1115 437 321 58 87 chr11 69521498 69521877 -52321979 + RLTR9A LTR ERVK 1 368 0 7 1115 342 195 165 25 chr11 69521938 69522017 -52321839 - ID_B1 SINE B4 -33 191 102 7 1115 304 250 42 32 chr11 69522048 69522143 -52321713 - PB1D9 SINE Alu -9 111 16 7 1115 278 328 0 0 chr11 69522397 69522464 -52321392 - ID4_ SINE ID -5 78 12 7 1115 309 164 43 43 chr11 69522809 69522879 -52320977 - B1F SINE Alu 0 149 80 7 1115 312 325 43 0 chr11 69523146 69523263 -52320593 - MLT1N2 LTR MaLR -9 553 432 7 1115 597 317 7 0 chr11 69523647 69523792 -52320064 + RSINE1 SINE B4 3 148 -17 8 1115 626 109 0 21 chr11 69524369 69524463 -52319393 - B1_Mus2 SINE Alu 0 147 56 8 1115 1273 79 0 0 chr11 69524463 69524628 -52319228 + B2_Mm2 SINE B2 1 165 -30 8 1115 242 178 44 0 chr11 69524613 69524658 -52319198 - B1_Mus2 SINE Alu -74 73 27 8 1115 1414 225 118 67 chr11 69524958 69525467 -52318389 + RMER2 LTR ERV1 33 567 0 8 1115 1585 62 0 0 chr11 69525656 69525849 -52318007 + B2_Mm1t SINE B2 1 193 0 8 1115 200 59 29 0 chr11 69525881 69525915 -52317941 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1115 1168 89 0 0 chr11 69525927 69526073 -52317783 + B1_Mus2 SINE Alu 2 147 0 8 1115 317 118 0 38 chr11 69526077 69526156 -52317700 + A-rich Low_complexity Low_complexity 1 76 0 8 1115 1374 39 77 6 chr11 69526171 69526353 -52317503 + B2_Mm2 SINE B2 1 195 0 8 1115 270 81 0 0 chr11 69526362 69526399 -52317457 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1115 1052 99 0 0 chr11 69526408 69526549 -52317307 - B1_Mus1 SINE Alu -2 146 6 9 1115 515 188 38 169 chr11 69526409 69526569 -52317287 - B4 SINE B4 -69 223 85 9 1115 429 258 135 16 chr11 69526654 69526725 -52317131 + B1F1 SINE Alu 1 88 -61 9 1115 252 0 0 0 chr11 69526725 69526753 -52317103 + (CGGG)n Simple_repeat Simple_repeat 2 29 0 9 1115 429 258 135 16 chr11 69526753 69526807 -52317049 + B1F1 SINE Alu 89 141 -8 9 1115 1038 76 7 65 chr11 69527147 69527302 -52316554 - B1_Mus1 SINE Alu 0 148 3 9 1115 291 157 0 0 chr11 69527502 69527553 -52316303 + CT-rich Low_complexity Low_complexity 1 51 0 9 1115 1174 62 0 40 chr11 69527553 69527705 -52316151 - B1_Mus2 SINE Alu -1 146 1 9 1115 833 96 0 8 chr11 69527720 69527846 -52316010 + (GAAAA)n Simple_repeat Simple_repeat 2 126 0 9 1115 859 220 88 10 chr11 69527848 69528041 -52315815 + B3 SINE B2 4 211 -5 9 1115 486 0 0 0 chr11 69528089 69528143 -52315713 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 1115 265 43 21 42 chr11 69528369 69528417 -52315439 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 1 1115 1110 75 7 7 chr11 69528834 69528981 -52314875 - B1_Mus2 SINE Alu 0 147 1 1 1115 1009 199 19 19 chr11 69529070 69529285 -52314571 + B3 SINE B2 2 216 0 1 1115 487 217 155 9 chr11 69529378 69529494 -52314362 + B1_Mur2 SINE Alu 9 141 -8 1 1115 380 297 35 18 chr11 69529506 69529619 -52314237 + MTEb LTR MaLR 158 272 -107 1 1115 234 291 103 11 chr11 69529621 69529708 -52314148 + MLT1H LTR MaLR 77 171 -378 1 1115 670 168 0 25 chr11 69529880 69530002 -52313854 - B1_Mur4 SINE Alu 0 150 32 1 1115 342 0 0 0 chr11 69530065 69530103 -52313753 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1115 288 0 0 0 chr11 69530103 69530134 -52313722 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1115 1204 54 0 26 chr11 69530162 69530313 -52313543 + B1_Mm SINE Alu 1 147 0 1 1115 1109 64 134 45 chr11 69530828 69531007 -52312849 + B2_Mm2 SINE B2 1 195 0 1 1115 763 235 58 44 chr11 69531058 69531263 -52312593 + B3 SINE B2 2 209 -7 1 1115 401 318 30 22 chr11 69531268 69531403 -52312453 - B1F SINE Alu -9 140 5 1 1115 520 256 8 16 chr11 69531284 69531407 -52312449 - ID_B1 SINE B4 -21 203 82 1 1115 362 0 0 0 chr11 69531426 69531475 -52312381 - L1Md_T LINE L1 -1 6581 6533 1 1115 212 186 17 0 chr11 69531788 69531847 -52312009 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1115 684 78 121 0 chr11 69531950 69532066 -52311790 + B1_Mur3 SINE Alu 20 149 0 1 1115 689 215 14 22 chr11 69532518 69532656 -52311200 + B1_Mur1 SINE Alu 1 137 -12 1 1115 200 34 0 33 chr11 69532658 69532688 -52311168 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1 1115 316 146 0 0 chr11 69532689 69532737 -52311119 - B2_Mm2 SINE B2 -100 95 48 1 1115 1274 83 6 0 chr11 69532770 69532939 -52310917 - B2_Mm1t SINE B2 -22 171 2 1 1115 919 236 33 14 chr11 69533007 69533218 -52310638 + B3 SINE B2 2 216 0 1 1115 963 50 0 0 chr11 69533234 69533355 -52310501 + (GA)n Simple_repeat Simple_repeat 1 121 0 1 1115 695 112 0 10 chr11 69533361 69533460 -52310396 + B1_Mus2 SINE Alu 48 145 -2 1 1115 322 256 63 47 chr11 69533482 69533609 -52310247 + B1F SINE Alu 21 149 0 1 1115 1252 48 0 0 chr11 69533850 69533997 -52309859 - B1_Mus2 SINE Alu 0 147 1 1 1115 245 213 0 0 chr11 69533997 69534044 -52309812 - MER82 DNA MER2_type -37 616 570 1 1115 666 245 97 48 chr11 69534047 69534253 -52309603 + B3 SINE B2 1 216 0 1 1115 1369 262 137 92 chr11 69534649 69535163 -52308693 - RLTR40 LTR ERVK -14 803 213 1 1115 204 40 0 0 chr11 69535163 69535188 -52308668 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1115 1369 262 137 92 chr11 69535188 69535442 -52308414 - RLTR40 LTR ERVK -605 212 1 1 1115 1039 82 7 52 chr11 69535715 69535870 -52307986 - B1_Mus1 SINE Alu 0 148 1 1 1115 1504 64 11 0 chr11 69535879 69536067 -52307789 - B2_Mm1t SINE B2 -3 190 1 1 1115 994 108 126 6 chr11 69536077 69536244 -52307612 - B2_Mm2 SINE B2 -8 187 1 1 1115 452 324 47 47 chr11 69536283 69536456 -52307400 - Lx7 LINE L1 -75 7398 7224 1 1115 1108 80 0 0 chr11 69536456 69536594 -52307262 + B1_Mus1 SINE Alu 3 140 -8 1 1115 279 0 0 0 chr11 69536594 69536625 -52307231 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1115 452 331 43 40 chr11 69536625 69536798 -52307058 - Lx7 LINE L1 -250 7223 7038 1 1115 624 288 37 0 chr11 69536815 69537006 -52306850 - Lx7 LINE L1 -730 6966 6769 1 1115 243 158 0 0 chr11 69537017 69537055 -52306801 + B3 SINE B2 4 41 -175 1 1115 1520 77 0 5 chr11 69537055 69537251 -52306605 + B2_Mm2 SINE B2 1 195 0 1 1115 536 183 6 176 chr11 69537293 69537452 -52306404 + B2_Mm2 SINE B2 27 158 -37 1 1115 384 22 0 0 chr11 69537452 69537497 -52306359 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 1115 1741 16 0 0 chr11 69537525 69537716 -52306140 - B2_Mm1a SINE B2 -2 191 1 1 1115 1153 63 14 0 chr11 69537746 69537889 -52305967 + B1_Mus1 SINE Alu 3 147 -1 1 1115 525 283 120 14 chr11 69537922 69538130 -52305726 - Lx8 LINE L1 -706 6767 6538 1 1115 1032 105 7 0 chr11 69538639 69538782 -52305074 - B1_Mus2 SINE Alu -3 144 1 1 1115 878 310 105 56 chr11 69538785 69539122 -52304734 - Lx8 LINE L1 -1063 6410 6057 1 1115 945 62 108 0 chr11 69539122 69539251 -52304605 - B1_Mm SINE Alu 0 147 5 1 1115 878 310 105 56 chr11 69539251 69539467 -52304389 - Lx8 LINE L1 -1417 6056 5830 1 1115 2091 157 18 33 chr11 69539479 69539875 -52303981 + MTC LTR MaLR 1 390 -31 1 1115 275 27 0 0 chr11 69539876 69539913 -52303943 + MTC LTR MaLR 352 388 -31 1 1115 411 69 35 0 chr11 69539914 69539972 -52303884 + MTC LTR MaLR 352 411 -8 1 1115 376 283 0 39 chr11 69539983 69540086 -52303770 - PB1 SINE Alu -8 119 21 1 1115 325 261 108 68 chr11 69540086 69540127 -52303729 - ID_B1 SINE B4 -5 215 66 1 1115 1313 163 134 8 chr11 69540129 69540383 -52303473 - RMER6A LTR ERVK 0 756 471 1 1115 648 38 0 0 chr11 69540393 69540472 -52303384 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1115 685 169 89 0 chr11 69540472 69540596 -52303260 - B1_Mur3 SINE Alu -13 136 2 1 1115 384 40 0 0 chr11 69540666 69540716 -52303140 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1115 311 280 32 8 chr11 69540733 69540841 -52303015 + PB1D9 SINE Alu 12 120 0 1 1115 546 322 7 7 chr11 69540964 69541117 -52302739 + MLT2B2 LTR ERVL 3 155 -360 1 1115 326 330 171 10 chr11 69541161 69541366 -52302490 + MLT2B2 LTR ERVL 325 562 0 1 1115 503 361 129 23 chr11 69541367 69541753 -52302103 + L1MEf LINE L1 1269 1695 -4505 1 1115 1505 62 5 0 chr11 69541782 69541974 -52301882 - B2_Mm1a SINE B2 0 193 1 1 1115 717 164 164 0 chr11 69541977 69542105 -52301751 - B1_Mur3 SINE Alu 0 149 1 1 1115 199 140 0 39 chr11 69542255 69542307 -52301549 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 1115 490 224 55 157 chr11 69542312 69542350 -52301506 - B2_Mm2 SINE B2 0 195 161 1 1115 1176 95 0 0 chr11 69542350 69542498 -52301358 - B1_Mus1 SINE Alu 0 148 1 1 1115 700 158 42 85 chr11 69542498 69542676 -52301180 - B3 SINE B2 -35 160 1 1 1115 789 273 22 0 chr11 69542688 69542871 -52300985 - B3 SINE B2 -10 206 20 1 1115 553 268 55 60 chr11 69542889 69543072 -52300784 - B3A SINE B2 -8 190 9 1 1115 315 0 0 0 chr11 69543091 69543126 -52300730 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1115 486 248 45 9 chr11 69543129 69543239 -52300617 - RSINE1 SINE B4 -48 117 4 1 1115 200 139 0 27 chr11 69543421 69543458 -52300398 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1115 649 248 14 7 chr11 69544108 69544254 -52299602 - B1_Mur1 SINE Alu -1 148 2 1 1115 541 229 124 85 chr11 69544280 69544433 -52299423 + RSINE1 SINE B4 7 165 0 1 1115 211 329 111 72 chr11 69544285 69544465 -52299391 + B3A SINE B2 11 197 -1 1 1115 371 320 23 0 chr11 69544646 69544774 -52299082 - B1F SINE Alu -18 131 1 1 1115 823 53 51 34 chr11 69544848 69544965 -52298891 + B1_Mus1 SINE Alu 21 139 -9 1 1115 576 0 0 0 chr11 69544965 69545029 -52298827 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1115 222 37 0 0 chr11 69545032 69545059 -52298797 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1115 905 116 60 0 chr11 69545060 69545221 -52298635 - B2_Mm2 SINE B2 -12 204 3 1 1115 1188 15 0 15 chr11 69545250 69545386 -52298470 - B1_Mm SINE Alu -12 135 2 1 1115 908 221 81 10 chr11 69545414 69545611 -52298245 - B3 SINE B2 -3 213 3 1 1115 756 225 103 36 chr11 69545641 69545835 -52298021 + B3 SINE B2 2 208 -8 1 1115 310 289 39 58 chr11 69545943 69546046 -52297810 + B4A SINE B4 4 104 -188 1 1115 268 173 66 7 chr11 69546110 69546215 -52297641 - B3 SINE B2 -21 195 1 1 1115 343 250 174 79 chr11 69546227 69546405 -52297451 - B3A SINE B2 0 198 4 1 1115 587 188 148 0 chr11 69546415 69546543 -52297313 - B1_Mur2 SINE Alu -1 148 2 1 1115 301 312 0 0 chr11 69546551 69546627 -52297229 + ID_B1 SINE B4 65 140 -152 1 1115 247 189 0 70 chr11 69546750 69546807 -52297049 + B1_Mur4 SINE Alu 97 149 -1 1 1115 338 333 56 14 chr11 69546818 69546961 -52296895 + B2_Mm2 SINE B2 39 187 -8 1 1115 384 171 56 22 chr11 69547007 69547097 -52296759 + B1_Mus2 SINE Alu 29 121 -26 1 1115 249 33 0 0 chr11 69547228 69547258 -52296598 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1 1115 1144 96 6 0 chr11 69547260 69547417 -52296439 - B2_Mm1a SINE B2 -35 158 1 1 1115 259 284 0 75 chr11 69547935 69548095 -52295761 + (TGGG)n Simple_repeat Simple_repeat 1 148 0 1 1115 220 313 0 41 chr11 69548587 69548757 -52295099 + (TGGG)n Simple_repeat Simple_repeat 1 163 0 1 1115 659 180 46 2 chr11 69549970 69550089 -52293767 + B1F2 SINE Alu 16 137 -12 1 1115 1084 57 50 7 chr11 69551301 69551442 -52292414 + B1_Mus2 SINE Alu 1 147 0 1 1115 573 251 175 22 chr11 69551675 69551858 -52291998 - B3 SINE B2 -5 211 1 1 1115 1203 132 39 0 chr11 69552165 69552347 -52291509 + B2_Mm2 SINE B2 2 190 -5 1 1115 581 214 167 0 chr11 69552394 69552520 -52291336 + B3 SINE B2 3 149 -67 1 1115 240 254 36 0 chr11 69552528 69552583 -52291273 - PB1D9 SINE Alu -32 88 32 1 1115 252 284 0 119 chr11 69553104 69553188 -52290668 + B4 SINE B4 124 197 -95 1 1115 1065 174 56 0 chr11 69554223 69554418 -52289438 - B3 SINE B2 -6 210 5 1 1115 1102 166 110 0 chr11 69554802 69555131 -52288725 + RMER10A LTR ERVL 21 440 -2 1 1115 319 300 22 0 chr11 69556476 69556566 -52287290 + PB1D10 SINE Alu 13 104 -13 1 1115 24 53 0 0 chr11 69557943 69557981 -52285875 + AT_rich Low_complexity Low_complexity 1 38 0 1 1115 319 239 38 58 chr11 69558856 69558968 -52284888 + PB1 SINE Alu 8 126 -1 1 1115 1640 47 0 0 chr11 69561054 69561246 -52282610 - B2_Mm1a SINE B2 -1 192 1 2 1115 637 196 64 14 chr11 69561289 69561429 -52282427 - B1_Mus1 SINE Alu -1 147 1 2 1115 1244 90 90 0 chr11 69561708 69561885 -52281971 + B2_Mm2 SINE B2 3 195 0 2 1115 433 271 47 0 chr11 69562069 69562176 -52281680 - PB1D10 SINE Alu 0 117 6 2 1115 1188 75 0 20 chr11 69562243 69562393 -52281463 - B1_Mus2 SINE Alu 0 147 1 2 1115 1176 63 72 33 chr11 69562419 69562599 -52281257 + B2_Mm2 SINE B2 6 192 -3 2 1115 480 202 25 50 chr11 69563444 69563564 -52280292 - PB1D9 SINE Alu -3 117 1 2 1115 1117 107 77 22 chr11 69563574 69563756 -52280100 - B2_Mm2 SINE B2 -2 193 2 2 1115 261 213 180 0 chr11 69563759 69563820 -52280036 - ID_B1 SINE B4 -6 218 147 2 1115 309 293 0 66 chr11 69563845 69563951 -52279905 + ID_B1 SINE B4 80 178 -46 2 1115 482 243 28 18 chr11 69563859 69563968 -52279888 + PB1D9 SINE Alu 9 118 -2 2 1115 1621 42 0 5 chr11 69564198 69564389 -52279467 + B2_Mm1t SINE B2 2 191 -2 2 1115 1236 122 10 31 chr11 69564612 69564807 -52279049 - B2_Mm2 SINE B2 -4 191 1 2 1115 348 24 0 0 chr11 69564824 69564865 -52278991 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1115 444 320 27 43 chr11 69565191 69565377 -52278479 - MTEa LTR MaLR -67 312 130 2 1115 246 62 0 0 chr11 69565455 69565487 -52278369 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1115 216 305 102 0 chr11 69565631 69565690 -52278166 + ID4_ SINE ID 3 67 -16 2 1115 1134 90 0 0 chr11 69565791 69565936 -52277920 - B1_Mus1 SINE Alu -2 146 2 2 1115 333 256 36 24 chr11 69565949 69566033 -52277823 - B1_Mur2 SINE Alu -1 148 64 2 1115 22 0 0 0 chr11 69566058 69566080 -52277776 + AT_rich Low_complexity Low_complexity 1 22 0 2 1115 963 211 94 5 chr11 69566081 69566272 -52277584 - B3 SINE B2 -8 208 1 2 1115 586 221 143 17 chr11 69566297 69566472 -52277384 - B3A SINE B2 0 198 2 2 1115 759 276 52 0 chr11 69566601 69566775 -52277081 - B4A SINE B4 -74 218 36 2 1115 545 252 99 0 chr11 69566815 69566946 -52276910 + B1F2 SINE Alu 1 144 -5 2 1115 184 72 0 67 chr11 69567075 69567120 -52276736 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 2 1115 1398 95 11 0 chr11 69567484 69567674 -52276182 + B2_Mm1t SINE B2 1 192 -1 2 1115 558 221 94 14 chr11 69567687 69567825 -52276031 + B1_Mur3 SINE Alu 1 149 0 2 1115 26 0 0 0 chr11 69567998 69568024 -52275832 + AT_rich Low_complexity Low_complexity 1 26 0 2 1115 1234 48 0 13 chr11 69568085 69568234 -52275622 + B1_Mus2 SINE Alu 1 147 0 2 1115 463 291 189 0 chr11 69568362 69568537 -52275319 - MER119 DNA MER1_type -370 213 6 2 1115 1133 193 9 14 chr11 69568985 69569195 -52274661 + B3 SINE B2 2 210 -6 2 1115 21 0 0 0 chr11 69569201 69569222 -52274634 + AT_rich Low_complexity Low_complexity 1 21 0 2 1115 558 132 299 26 chr11 69569413 69569530 -52274326 + B1_Mur4 SINE Alu 2 150 0 2 1115 1081 89 146 0 chr11 69569710 69569868 -52273988 - B2_Mm2 SINE B2 -14 181 1 2 1115 361 315 45 0 chr11 69569920 69570031 -52273825 + PB1D10 SINE Alu 2 117 0 2 1115 305 183 32 32 chr11 69570042 69570104 -52273752 + ID4 SINE ID 11 72 -11 2 1115 344 160 73 67 chr11 69570061 69570179 -52273677 + B1F1 SINE Alu 34 149 0 2 1115 1355 87 32 0 chr11 69570488 69570673 -52273183 - B2_Mm1a SINE B2 -1 192 2 2 1115 181 242 179 15 chr11 69571311 69571378 -52272478 + L2b LINE L2 3293 3370 -5 2 1115 256 273 0 29 chr11 69571832 69571900 -52271956 + G-rich Low_complexity Low_complexity 4 69 0 2 1115 21 0 0 0 chr11 69573393 69573414 -52270442 + AT_rich Low_complexity Low_complexity 1 21 0 2 1115 425 288 224 0 chr11 69573414 69573539 -52270317 - RSINE1 SINE B4 -10 155 3 2 1115 219 305 0 0 chr11 69575346 69575405 -52268451 - B1_Mur2 SINE Alu -17 132 74 2 1115 299 0 78 0 chr11 69575671 69575722 -52268134 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 2 1115 1220 74 0 0 chr11 69575722 69575870 -52267986 - B1_Mus1 SINE Alu 0 148 1 2 1115 505 281 29 7 chr11 69575879 69576015 -52267841 - B4 SINE B4 -73 219 81 2 1115 1129 101 11 6 chr11 69576050 69576229 -52267627 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1115 319 327 77 110 chr11 69576307 69576489 -52267367 - B4A SINE B4 -59 233 58 2 1115 398 241 13 0 chr11 69576537 69576616 -52267240 - B4 SINE B4 -206 86 7 2 1115 369 0 0 0 chr11 69576657 69576698 -52267158 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 1115 1161 76 0 7 chr11 69576698 69576833 -52267023 - B1_Mus1 SINE Alu -10 138 4 2 1115 348 161 103 0 chr11 69576845 69576932 -52266924 - B2_Mm2 SINE B2 -8 187 92 2 1115 290 118 0 38 chr11 69577041 69577094 -52266762 - B2_Mm2 SINE B2 -98 97 47 2 1115 1064 137 18 0 chr11 69577164 69577332 -52266524 - B2_Mm1t SINE B2 -22 171 1 2 1115 912 236 60 10 chr11 69577356 69577557 -52266299 - B3 SINE B2 -5 211 1 2 1115 665 217 33 0 chr11 69577588 69577708 -52266148 + B1_Mur1 SINE Alu 4 127 -22 2 1115 644 211 70 54 chr11 69577793 69577978 -52265878 - B3A SINE B2 0 198 11 2 1115 315 275 54 21 chr11 69578021 69578114 -52265742 - ID_B1 SINE B4 -26 198 103 2 1115 1077 31 39 0 chr11 69578149 69578278 -52265578 + B1_Mus1 SINE Alu 2 135 -13 2 1115 446 0 19 0 chr11 69578278 69578332 -52265524 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 2 1115 303 257 65 0 chr11 69578364 69578472 -52265384 - B1F2 SINE Alu -27 122 5 2 1115 493 189 28 9 chr11 69578537 69578644 -52265212 - B1_Mur1 SINE Alu 0 149 41 2 1115 246 308 0 0 chr11 69579338 69579442 -52264414 + G-rich Low_complexity Low_complexity 5 108 0 2 1115 249 152 45 15 chr11 69579442 69579509 -52264347 + (CTGGGG)n Simple_repeat Simple_repeat 3 71 0 2 1115 21 57 0 0 chr11 69579639 69579674 -52264182 + GC_rich Low_complexity Low_complexity 1 35 0 2 1115 216 0 0 0 chr11 69580412 69580436 -52263420 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1115 184 188 80 40 chr11 69581598 69581648 -52262208 + MIRc SINE MIR 114 165 -103 2 1115 187 318 185 9 chr11 69581868 69581976 -52261880 - MIRc SINE MIR -119 149 23 2 1115 506 277 8 0 chr11 69582061 69582180 -52261676 - PB1D7 SINE Alu 0 120 1 2 1115 21 0 0 0 chr11 69582190 69582211 -52261645 + AT_rich Low_complexity Low_complexity 1 21 0 2 1115 919 215 68 5 chr11 69582218 69582410 -52261446 - B3 SINE B2 -12 204 1 2 1115 459 0 0 0 chr11 69582654 69582705 -52261151 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1115 706 303 58 27 chr11 69582740 69582964 -52260892 - B4A SINE B4 -12 280 50 2 1115 500 303 105 7 chr11 69582992 69583135 -52260721 - RSINE1 SINE B4 0 165 9 2 1115 644 217 0 0 chr11 69583145 69583265 -52260591 - PB1D7 SINE Alu 0 120 1 2 1115 207 355 88 24 chr11 69583331 69583536 -52260320 - L2 LINE L2 -640 2779 2562 2 1115 261 302 178 20 chr11 69583621 69583773 -52260083 + MIRb SINE MIR 8 183 -85 2 1115 381 272 48 10 chr11 69583918 69584022 -52259834 - PB1D10 SINE Alu 0 117 10 2 1115 267 290 247 33 chr11 69584022 69584064 -52259792 - ID_B1 SINE B4 0 220 43 2 1115 296 239 30 0 chr11 69584497 69584564 -52259292 + ID2 SINE ID 2 70 -13 2 1115 414 0 0 0 chr11 69584565 69584611 -52259245 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1115 805 174 198 28 chr11 69584623 69584800 -52259056 + B3 SINE B2 1 207 -9 2 1115 2218 106 70 134 chr11 69584833 69585180 -52258676 + RMER4A LTR ERVK 33 373 -93 2 1115 1165 76 7 0 chr11 69585180 69585325 -52258531 - B1_Mus2 SINE Alu 0 147 2 2 1115 2218 106 70 134 chr11 69585325 69585433 -52258423 + RMER4A LTR ERVK 374 459 -7 2 1115 207 69 0 0 chr11 69585506 69585535 -52258321 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1115 773 239 92 22 chr11 69585536 69585720 -52258136 - B3 SINE B2 -14 202 6 2 1115 284 289 0 0 chr11 69585810 69585862 -52257994 - MER2 DNA MER2_type 0 345 294 2 1115 432 234 121 48 chr11 69586041 69586182 -52257674 + ID_B1 SINE B4 85 227 -65 2 1115 344 245 80 94 chr11 69586186 69586286 -52257570 - MER2 DNA MER2_type -94 251 164 2 1115 414 204 62 49 chr11 69586286 69586430 -52257426 - B1F2 SINE Alu 0 149 4 2 1115 344 245 80 94 chr11 69586430 69586541 -52257315 - MER2 DNA MER2_type -182 163 43 2 1115 415 302 33 8 chr11 69586544 69586664 -52257192 - MIR SINE MIR -64 198 76 2 1115 674 170 306 44 chr11 69587393 69587553 -52256303 + B3 SINE B2 1 202 -14 2 1115 486 0 0 0 chr11 69587555 69587609 -52256247 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 2 1115 219 246 18 0 chr11 69589622 69589679 -52254177 + CT-rich Low_complexity Low_complexity 2 59 0 2 1115 279 191 0 0 chr11 69591769 69591837 -52252019 + GA-rich Low_complexity Low_complexity 2 69 0 2 1115 203 194 0 0 chr11 69594705 69594741 -52249115 + A-rich Low_complexity Low_complexity 1 36 0 2 1115 230 148 19 0 chr11 69594809 69594863 -52248993 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1115 222 128 0 78 chr11 69595646 69595697 -52248159 + ID SINE ID 1 47 -177 2 1115 212 339 203 0 chr11 69595709 69595827 -52248029 + B1F1 SINE Alu 1 142 -7 2 1115 230 373 47 53 chr11 69596020 69596190 -52247666 - MER102a DNA MER1_type -48 282 114 2 1115 757 205 137 23 chr11 69596239 69596414 -52247442 - B3 SINE B2 -21 195 1 2 1115 625 211 61 50 chr11 69596429 69596609 -52247247 + B1_Mur1 SINE Alu 19 149 0 2 1115 628 261 51 0 chr11 69596606 69596744 -52247112 + ID_B1 SINE B4 80 224 0 2 1115 442 252 42 42 chr11 69596751 69596871 -52246985 + PB1D7 SINE Alu 1 120 0 3 1115 244 303 30 0 chr11 69596911 69596977 -52246879 + ID4_ SINE ID 14 81 -2 3 1115 192 337 90 0 chr11 69597097 69597186 -52246670 - MIR SINE MIR -91 171 75 3 1115 403 289 48 0 chr11 69597204 69597308 -52246548 - PB1D7 SINE Alu -11 109 1 3 1115 551 181 0 0 chr11 69597320 69597414 -52246442 - B1F SINE Alu -51 98 5 3 1115 291 300 130 0 chr11 69597619 69597719 -52246137 - L2b LINE L2 -9 3366 3254 3 1115 655 224 27 27 chr11 69597790 69597937 -52245919 + B1F SINE Alu 3 149 0 3 1115 185 59 59 0 chr11 69599010 69599044 -52244812 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 3 1115 1265 35 7 0 chr11 69599045 69599190 -52244666 - B1_Mm SINE Alu 0 147 2 3 1116 597 102 59 39 chr11 69599534 69599636 -52244220 + B3 SINE B2 2 105 -111 3 1116 185 159 23 0 chr11 69599727 69599771 -52244085 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1116 631 178 144 23 chr11 69599804 69599936 -52243920 + B1_Mur3 SINE Alu 2 149 0 3 1116 290 135 18 55 chr11 69600264 69600319 -52243537 - PB1D10 SINE Alu -2 125 71 3 1116 450 49 0 0 chr11 69600644 69600705 -52243151 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1116 782 131 20 74 chr11 69600705 69600844 -52243012 - B1_Mus1 SINE Alu -8 140 9 3 1116 216 314 84 53 chr11 69600916 69601047 -52242809 + L2a LINE L2 2307 2441 -978 3 1116 463 233 59 25 chr11 69601049 69601168 -52242688 + B1F SINE Alu 1 123 -26 3 1116 575 248 21 50 chr11 69601328 69601468 -52242388 + ID_B1 SINE B4 81 216 -8 3 1116 259 160 58 39 chr11 69601425 69601477 -52242379 + PB1D10 SINE Alu 64 116 -1 3 1116 207 125 0 0 chr11 69601477 69601517 -52242339 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1116 932 136 6 14 chr11 69601617 69601783 -52242073 - B2_Mm1t SINE B2 0 195 40 3 1116 397 303 20 0 chr11 69601779 69601878 -52241978 - B1F1 SINE Alu -48 101 1 3 1116 297 349 79 0 chr11 69601925 69602051 -52241805 + L2a LINE L2 3026 3161 -265 3 1116 495 246 73 107 chr11 69602090 69602240 -52241616 - RSINE1 SINE B4 0 165 21 3 1116 317 218 171 151 chr11 69602238 69602384 -52241472 - B1_Mur2 SINE Alu 0 149 1 3 1116 1112 157 0 5 chr11 69602448 69602640 -52241216 - B2_Mm2 SINE B2 -4 191 1 3 1116 818 252 33 0 chr11 69602671 69602881 -52240975 + ID_B1 SINE B4 3 219 -5 3 1116 434 308 123 0 chr11 69602954 69603084 -52240772 - RSINE1 SINE B4 -15 150 5 3 1116 537 254 94 30 chr11 69603093 69603296 -52240560 - ID_B1 SINE B4 -7 217 2 3 1116 1049 121 0 0 chr11 69603444 69603585 -52240271 + B1_Mus2 SINE Alu 1 141 -6 3 1116 289 250 0 87 chr11 69603714 69603806 -52240050 - B4 SINE B4 -207 85 2 3 1116 501 58 0 0 chr11 69604239 69604308 -52239548 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1116 310 261 15 0 chr11 69604365 69604430 -52239426 - RSINE1 SINE B4 -99 66 1 3 1116 359 229 144 18 chr11 69604552 69604663 -52239193 - B1F SINE Alu -8 141 17 3 1116 298 315 45 18 chr11 69604674 69604784 -52239072 + MIR SINE MIR 93 205 -57 3 1116 337 342 112 0 chr11 69604818 69604979 -52238877 - MIR SINE MIR -1 261 83 3 1116 185 83 0 27 chr11 69605316 69605353 -52238503 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1116 338 229 0 14 chr11 69605362 69605433 -52238423 + B3A SINE B2 1 70 -128 3 1116 1216 255 117 9 chr11 69605439 69605772 -52238084 + MTD LTR MaLR 48 416 -3 3 1116 288 250 0 40 chr11 69605776 69605851 -52238005 + B3A SINE B2 39 110 -88 3 1116 369 0 0 0 chr11 69605851 69605892 -52237964 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1116 386 20 20 0 chr11 69605892 69605942 -52237914 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1116 898 168 7 0 chr11 69605954 69606097 -52237759 - B1_Mus1 SINE Alu 0 148 5 3 1116 420 71 0 0 chr11 69606501 69606557 -52237299 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1116 527 297 50 7 chr11 69606558 69606697 -52237159 - RSINE1 SINE B4 -20 145 1 3 1116 417 263 0 63 chr11 69606720 69606846 -52237010 - PB1D7 SINE Alu -2 118 1 3 1116 252 0 0 0 chr11 69607564 69607592 -52236264 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1116 1160 192 14 0 chr11 69607989 69608202 -52235654 + B3 SINE B2 1 216 0 3 1116 461 246 0 43 chr11 69610112 69610227 -52233629 - ID_B1 SINE B4 0 224 115 3 1116 402 21 0 0 chr11 69610547 69610594 -52233262 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1116 348 24 0 0 chr11 69610594 69610634 -52233222 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1116 643 157 9 9 chr11 69610640 69610749 -52233107 - PB1D10 SINE Alu -8 109 1 3 1116 479 17 17 0 chr11 69612294 69612354 -52231502 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1116 405 0 0 0 chr11 69612354 69612398 -52231458 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1116 531 0 0 0 chr11 69613572 69613631 -52230225 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1116 235 214 0 18 chr11 69616380 69616437 -52227419 + (CGG)n Simple_repeat Simple_repeat 3 58 0 3 1116 627 234 7 0 chr11 69619399 69619536 -52224320 - B1_Mur1 SINE Alu -1 148 11 3 1116 580 226 51 29 chr11 69619536 69619673 -52224183 - B1F SINE Alu -9 140 1 3 1116 524 183 61 84 chr11 69619837 69619968 -52223888 - B1_Mur1 SINE Alu 0 149 22 3 1116 1108 128 55 22 chr11 69620029 69620212 -52223644 - B2_Mm2 SINE B2 -5 190 2 3 1116 614 228 88 0 chr11 69620237 69620373 -52223483 + B1_Mur2 SINE Alu 1 148 -1 3 1116 270 81 0 0 chr11 69620374 69620411 -52223445 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 3 1116 260 257 212 0 chr11 69620941 69621054 -52222802 + B1F SINE Alu 5 141 -8 3 1116 484 233 133 33 chr11 69621252 69621424 -52222432 - B3 SINE B2 0 216 25 3 1116 324 0 0 0 chr11 69621449 69621485 -52222371 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1116 482 0 17 0 chr11 69621487 69621545 -52222311 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1116 647 184 23 23 chr11 69621546 69621674 -52222182 - B3 SINE B2 -86 130 3 3 1116 811 179 7 27 chr11 69621798 69621947 -52221909 + B1_Mus1 SINE Alu 3 148 0 3 1116 306 0 0 0 chr11 69622051 69622085 -52221771 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 1116 432 0 0 0 chr11 69622085 69622132 -52221724 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1116 501 202 114 0 chr11 69622147 69622261 -52221595 - RSINE1 SINE B4 -37 128 2 3 1116 253 188 12 12 chr11 69622261 69622342 -52221514 + CT-rich Low_complexity Low_complexity 3 83 0 3 1116 991 58 0 41 chr11 69622348 69622493 -52221363 - B1_Mus2 SINE Alu 0 147 9 3 1116 282 317 123 65 chr11 69622534 69622689 -52221167 - RSINE1 SINE B4 0 165 2 3 1116 559 282 21 14 chr11 69622691 69622835 -52221021 - ID_B1 SINE B4 0 224 80 3 1116 1080 64 21 7 chr11 69623211 69623345 -52220511 + B1_Mur4 SINE Alu 1 137 -13 3 1116 477 0 0 0 chr11 69623345 69623398 -52220458 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 3 1116 425 279 30 23 chr11 69623415 69623547 -52220309 + B1F SINE Alu 9 141 -8 3 1116 258 216 223 9 chr11 69623543 69623655 -52220201 + MER3 DNA MER1_type 15 150 -59 3 1116 310 353 9 0 chr11 69623646 69623762 -52220094 - PB1D10 SINE Alu 0 117 1 3 1116 573 225 64 14 chr11 69623766 69623906 -52219950 - B1_Mur2 SINE Alu -2 147 1 3 1116 847 244 35 0 chr11 69623909 69624106 -52219750 - B3 SINE B2 -6 210 7 3 1116 641 147 0 27 chr11 69624119 69624231 -52219625 - B1_Mur4 SINE Alu 0 150 42 3 1116 563 237 35 43 chr11 69624253 69624394 -52219462 - ID_B1 SINE B4 -2 222 83 3 1116 205 379 6 19 chr11 69627084 69627240 -52216616 + (TTGGGG)n Simple_repeat Simple_repeat 2 155 0 3 1116 247 310 0 35 chr11 69627148 69627235 -52216621 + (CTGGGG)n Simple_repeat Simple_repeat 2 85 0 3 1116 234 301 22 60 chr11 69627446 69627630 -52216226 + (CTGGGG)n Simple_repeat Simple_repeat 3 179 0 3 1116 298 236 13 89 chr11 69628492 69628571 -52215285 + MT2B2 LTR ERVL 156 228 -356 3 1116 340 298 47 19 chr11 69628506 69628612 -52215244 + PB1D10 SINE Alu 7 115 -2 3 1116 978 197 93 0 chr11 69629258 69629451 -52214405 - B3 SINE B2 0 216 6 3 1116 1736 26 0 0 chr11 69629673 69629866 -52213990 + B2_Mm1a SINE B2 1 193 0 3 1116 792 98 195 0 chr11 69629880 69630003 -52213853 + B1_Mus2 SINE Alu 1 147 0 3 1116 216 238 115 35 chr11 69632578 69632665 -52211191 + PB1D7 SINE Alu 25 118 -2 3 1116 1554 57 0 10 chr11 69632843 69633037 -52210819 + B2_Mm1t SINE B2 2 193 0 3 1116 1191 68 7 0 chr11 69633089 69633236 -52210620 - B1_Mus1 SINE Alu 0 148 1 3 1116 386 202 19 22 chr11 69633249 69633353 -52210503 + B3A SINE B2 9 108 -87 3 1116 488 266 0 16 chr11 69633387 69633513 -52210343 - B1F2 SINE Alu 0 149 26 3 1116 21 0 0 0 chr11 69634376 69634397 -52209459 + AT_rich Low_complexity Low_complexity 1 21 0 3 1116 536 280 27 20 chr11 69635967 69636113 -52207743 - ID_B1 SINE B4 0 224 78 3 1116 1095 81 7 26 chr11 69636116 69636268 -52207588 - B1_Mur4 SINE Alu 0 150 2 3 1116 271 312 10 50 chr11 69636274 69636375 -52207481 - PB1D10 SINE Alu -2 115 19 3 1116 198 0 0 0 chr11 69638272 69638294 -52205562 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1116 212 169 33 17 chr11 69638306 69638366 -52205490 + A-rich Low_complexity Low_complexity 4 64 0 4 1116 195 42 0 0 chr11 69638801 69638825 -52205031 + (CGGGGG)n Simple_repeat Simple_repeat 2 25 0 4 1116 244 155 0 27 chr11 69639725 69639798 -52204058 + GA-rich Low_complexity Low_complexity 2 72 0 4 1116 207 0 0 0 chr11 69639958 69639981 -52203875 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 1116 232 163 0 0 chr11 69642906 69642949 -52200907 + ID4 SINE ID 5 47 -36 4 1116 402 39 0 0 chr11 69643151 69643203 -52200653 + (CTTG)n Simple_repeat Simple_repeat 2 53 0 4 1116 22 0 0 0 chr11 69643763 69643785 -52200071 + AT_rich Low_complexity Low_complexity 1 22 0 4 1116 219 239 13 53 chr11 69644158 69644233 -52199623 + G-rich Low_complexity Low_complexity 1 72 0 4 1116 489 34 0 0 chr11 69645377 69645436 -52198420 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1116 366 23 0 0 chr11 69645553 69645596 -52198260 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 4 1116 580 206 62 23 chr11 69645729 69645858 -52197998 + B1F SINE Alu 8 141 -8 4 1116 276 100 0 0 chr11 69645894 69645934 -52197922 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1116 198 0 0 0 chr11 69646718 69646740 -52197116 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1116 26 0 0 0 chr11 69647854 69647880 -52195976 + GC_rich Low_complexity Low_complexity 1 26 0 4 1116 221 146 0 20 chr11 69648028 69648077 -52195779 + G-rich Low_complexity Low_complexity 5 52 0 4 1116 183 100 0 0 chr11 69649398 69649428 -52194428 + (CCCCCT)n Simple_repeat Simple_repeat 1 30 0 4 1116 287 321 0 9 chr11 69650083 69650190 -52193666 + CT-rich Low_complexity Low_complexity 2 107 0 4 1116 198 103 0 0 chr11 69650294 69650323 -52193533 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 4 1116 1161 86 55 39 chr11 69653305 69653487 -52190369 + B2_Mm1t SINE B2 1 185 -8 4 1116 248 200 0 0 chr11 69653627 69653677 -52190179 - PB1D7 SINE Alu -62 58 9 4 1116 1061 66 153 24 chr11 69654201 69654371 -52189485 + B2_Mm1t SINE B2 2 193 0 4 1116 1220 121 22 6 chr11 69654384 69654567 -52189289 + B2_Mm2 SINE B2 1 186 -9 4 1116 1104 126 33 0 chr11 69654728 69654911 -52188945 - B2_Mm2 SINE B2 0 195 7 4 1116 785 193 210 28 chr11 69654964 69655145 -52188711 + B3 SINE B2 3 216 0 4 1116 250 236 54 27 chr11 69655211 69655285 -52188571 + PB1D10 SINE Alu 32 107 -10 4 1116 1215 54 0 0 chr11 69655562 69655709 -52188147 - B1_Mus2 SINE Alu 0 147 1 4 1116 429 54 0 0 chr11 69655780 69655836 -52188020 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1116 218 152 87 0 chr11 69655837 69655883 -52187973 - PB1D7 SINE Alu -1 119 70 4 1116 712 208 77 0 chr11 69655940 69656070 -52187786 - B1_Mur2 SINE Alu -8 141 2 4 1116 183 42 0 0 chr11 69656138 69656162 -52187694 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1116 374 314 48 8 chr11 69656190 69656315 -52187541 - RSINE1 SINE B4 -35 130 1 4 1116 1848 196 33 27 chr11 69656353 69656721 -52187135 - ORR1D1 LTR MaLR -2 372 3 4 1116 577 207 8 8 chr11 69656721 69656843 -52187013 - ID_B1 SINE B4 -4 220 99 4 1116 289 349 9 36 chr11 69656955 69657065 -52186791 - MER54A LTR ERVL -484 417 311 4 1116 1183 48 0 26 chr11 69657228 69657363 -52186493 + B1_Mus1 SINE Alu 2 136 -12 4 1116 414 0 0 0 chr11 69657363 69657409 -52186447 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1116 1183 48 0 26 chr11 69657409 69657424 -52186432 + B1_Mus1 SINE Alu 137 148 0 4 1116 414 0 0 0 chr11 69657484 69657530 -52186326 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1116 383 182 29 48 chr11 69657611 69657715 -52186141 - B2_Mm2 SINE B2 0 195 94 4 1116 515 198 179 16 chr11 69657718 69657841 -52186015 - B1_Mur1 SINE Alu -6 143 1 4 1116 786 210 7 0 chr11 69657873 69658016 -52185840 + B1_Mur2 SINE Alu 1 144 -5 4 1116 856 209 68 24 chr11 69658079 69658285 -52185571 + B3 SINE B2 1 215 -1 4 1116 3390 53 0 2 chr11 69658290 69658703 -52185153 + L1Md_F2 LINE L1 6171 6582 0 4 1116 221 312 126 18 chr11 69659207 69659318 -52184538 + MER5B DNA MER1_type 1 123 -55 4 1116 470 239 51 22 chr11 69659447 69659584 -52184272 - B1F2 SINE Alu -6 143 3 4 1116 499 276 90 0 chr11 69661928 69662062 -52181794 + RSINE1 SINE B4 2 147 -18 4 1116 216 111 0 0 chr11 69662062 69662098 -52181758 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 4 1116 211 356 33 0 chr11 69663283 69663373 -52180483 + MIRb SINE MIR 30 122 -146 4 1116 866 151 7 14 chr11 69666041 69666189 -52177667 + B1_Mus1 SINE Alu 2 148 0 4 1116 260 219 30 45 chr11 69666840 69666907 -52176949 + MER91A DNA Tip100 120 185 -11 4 1116 444 260 72 51 chr11 69667677 69667895 -52175961 + MIR SINE MIR 31 252 -16 4 1116 225 94 0 0 chr11 69667965 69667997 -52175859 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1116 1175 49 0 21 chr11 69668006 69668151 -52175705 - B1_Mus2 SINE Alu -5 142 1 4 1116 875 119 0 14 chr11 69669718 69669863 -52173993 + (GAAA)n Simple_repeat Simple_repeat 3 145 0 4 1116 757 210 103 39 chr11 69670707 69670828 -52173028 - URR1A DNA MER1_type -10 216 96 4 1116 1081 30 59 15 chr11 69670828 69670957 -52172899 + B1_Mm SINE Alu 1 137 -10 4 1116 291 28 0 0 chr11 69670957 69670993 -52172863 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1116 757 210 103 39 chr11 69670999 69671080 -52172776 - URR1A DNA MER1_type -131 95 1 4 1116 189 0 0 0 chr11 69671301 69671322 -52172534 + (TC)n Simple_repeat Simple_repeat 1 21 0 4 1116 207 0 0 0 chr11 69671322 69671344 -52172512 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1116 707 195 106 6 chr11 69672759 69672919 -52170937 - B3 SINE B2 -40 176 1 4 1116 736 54 135 0 chr11 69673015 69673126 -52170730 + B2_Mm2 SINE B2 4 129 -66 4 1116 330 26 0 0 chr11 69673131 69673170 -52170686 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 1116 859 81 309 7 chr11 69673197 69673346 -52170510 + B2_Mm2 SINE B2 1 194 -1 4 1116 267 328 66 15 chr11 69673598 69673734 -52170122 + L2b LINE L2 3222 3364 -11 4 1116 763 101 14 0 chr11 69674053 69674183 -52169673 - B2_Mm2 SINE B2 -54 139 2 4 1116 776 39 10 0 chr11 69674196 69674300 -52169556 - B1_Mus2 SINE Alu -1 146 42 4 1116 301 139 112 56 chr11 69674237 69674344 -52169512 - RLTR25B LTR ERVK -519 509 397 4 1116 262 330 0 0 chr11 69674350 69674450 -52169406 + (CCCCAG)n Simple_repeat Simple_repeat 1 100 0 4 1116 397 73 0 0 chr11 69674461 69674516 -52169340 - B1_Mus1 SINE Alu -93 55 1 4 1116 267 250 0 24 chr11 69674556 69674638 -52169218 + B3 SINE B2 137 216 0 4 1116 566 131 0 2 chr11 69674663 69674761 -52169095 + B2_Mm2 SINE B2 2 98 -100 4 1116 473 182 135 9 chr11 69674761 69674872 -52168984 + B1_Mus1 SINE Alu 3 127 -21 4 1116 275 188 0 20 chr11 69674872 69674921 -52168935 - B1F SINE Alu -13 136 89 4 1116 347 289 66 8 chr11 69675032 69675154 -52168702 + MurSatRep1 Unknown Unknown 155 283 -1854 4 1116 1071 41 0 174 chr11 69675199 69675299 -52168557 + B1_Mm SINE Alu 1 100 -47 4 1116 1385 85 16 0 chr11 69675299 69675487 -52168369 + B2_Mm1a SINE B2 2 192 -1 4 1116 1071 41 0 174 chr11 69675487 69675564 -52168292 + B1_Mm SINE Alu 101 147 0 4 1116 287 191 44 0 chr11 69675593 69675661 -52168195 + L1ME2 LINE L1 5866 5936 -228 4 1116 1165 106 0 27 chr11 69675665 69675850 -52168006 + B2_Mm2 SINE B2 8 187 -8 4 1116 380 333 13 7 chr11 69675887 69676041 -52167815 + L1MA10 LINE L1 6180 6334 0 4 1116 526 244 49 0 chr11 69676110 69676233 -52167623 + B1F SINE Alu 5 133 -16 4 1116 307 336 0 0 chr11 69676281 69676386 -52167470 + ID4 SINE ID 2 106 -46 4 1116 307 253 12 12 chr11 69676405 69676489 -52167367 + B4 SINE B4 8 91 -201 4 1116 218 260 0 172 chr11 69676595 69676688 -52167168 + B1F1 SINE Alu 5 81 -68 4 1116 218 100 25 0 chr11 69676874 69676898 -52166958 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 4 1116 1275 41 0 0 chr11 69676898 69677045 -52166811 - B1_Mm SINE Alu 0 147 1 4 1116 218 100 25 0 chr11 69677045 69677060 -52166796 + (TTTTTG)n Simple_repeat Simple_repeat 3 17 0 4 1116 4862 110 24 40 chr11 69677185 69678007 -52165849 + RMER17D2 LTR ERVK 1 809 0 4 1116 365 240 164 0 chr11 69678109 69678213 -52165643 - B1F2 SINE Alu -27 122 2 4 1116 356 346 42 5 chr11 69678263 69678455 -52165401 - L1MEd LINE L1 -5359 760 562 4 1116 232 290 116 0 chr11 69678596 69678665 -52165191 - BC1_Mm scRNA scRNA -63 89 13 4 1116 442 356 20 7 chr11 69678803 69678950 -52164906 + RSINE1 SINE B4 3 151 -14 4 1116 216 122 0 0 chr11 69678952 69678993 -52164863 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1116 999 81 73 0 chr11 69679023 69679159 -52164697 + B1_Mus1 SINE Alu 1 146 -2 4 1116 938 352 33 46 chr11 69679687 69680166 -52163690 - MER21B LTR ERV1 -390 473 1 4 1116 1880 128 42 67 chr11 69681387 69681788 -52162068 + RMER10B LTR ERVL 1 391 -7 4 1116 225 261 0 0 chr11 69681830 69681899 -52161957 + T-rich Low_complexity Low_complexity 1 69 0 4 1116 1224 68 0 0 chr11 69681899 69682046 -52161810 - B1_Mus1 SINE Alu 0 148 2 4 1116 347 115 0 0 chr11 69682094 69682146 -52161710 + B1_Mm SINE Alu 66 117 -30 4 1116 486 0 0 0 chr11 69682151 69682205 -52161651 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1116 261 0 0 0 chr11 69682260 69682289 -52161567 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 4 1116 800 165 0 73 chr11 69682290 69682440 -52161416 - B1_Mus2 SINE Alu -8 139 1 4 1116 809 222 88 29 chr11 69682454 69682658 -52161198 - B3 SINE B2 0 216 1 5 1116 277 374 11 4 chr11 69682658 69682804 -52161052 + MIR SINE MIR 44 189 -79 5 1116 351 361 30 8 chr11 69682812 69682943 -52160913 + MLT1F LTR MaLR 1 134 -414 5 1116 487 263 21 50 chr11 69682949 69683089 -52160767 - B1F SINE Alu 0 149 14 5 1116 364 302 56 21 chr11 69683096 69683238 -52160618 + MLT1F LTR MaLR 128 274 -274 5 1116 1416 89 16 0 chr11 69683415 69683606 -52160250 - B2_Mm2 SINE B2 0 195 2 5 1116 1120 181 29 0 chr11 69683608 69683813 -52160043 - B3 SINE B2 -4 212 2 5 1116 306 73 0 0 chr11 69683835 69683876 -52159980 + (TCC)n Simple_repeat Simple_repeat 3 43 0 5 1116 2598 155 64 28 chr11 69683915 69684339 -52159517 + RMER20A LTR ERVK 1 442 -74 5 1116 252 0 0 0 chr11 69684339 69684367 -52159489 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1116 2598 155 64 28 chr11 69684367 69684440 -52159416 + RMER20A LTR ERVK 443 516 0 5 1116 244 274 16 0 chr11 69684442 69684504 -52159352 - PB1D9 SINE Alu -15 105 43 5 1116 1218 88 59 32 chr11 69684512 69684699 -52159157 - B2_Mm2 SINE B2 -2 193 2 5 1116 851 87 24 0 chr11 69684709 69684836 -52159020 - B2_Mm2 SINE B2 -1 194 65 5 1116 466 356 36 16 chr11 69684866 69685060 -52158796 - B3A SINE B2 0 198 1 5 1116 678 235 0 0 chr11 69685077 69685213 -52158643 - B1_Mur1 SINE Alu -2 147 12 5 1116 256 335 79 79 chr11 69685082 69685247 -52158609 - B4 SINE B4 -73 219 55 5 1116 657 244 131 5 chr11 69685260 69685474 -52158382 + B4A SINE B4 1 241 -51 5 1116 273 292 87 36 chr11 69685549 69685714 -52158142 + B4 SINE B4 78 272 -20 5 1116 216 0 0 0 chr11 69686540 69686564 -52157292 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1116 546 236 154 57 chr11 69686585 69686760 -52157096 - B3A SINE B2 -6 192 1 5 1116 435 291 60 0 chr11 69686767 69686901 -52156955 - ID_B1 SINE B4 -1 223 82 5 1116 805 129 50 7 chr11 69686932 69687072 -52156784 + B1_Mus1 SINE Alu 3 148 0 5 1116 1341 103 38 0 chr11 69687078 69687262 -52156594 + B2_Mm2 SINE B2 3 193 -2 5 1116 243 0 0 0 chr11 69687308 69687335 -52156521 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1116 377 78 0 0 chr11 69687335 69687386 -52156470 - B1_Mm SINE Alu -9 138 88 5 1116 21 71 0 0 chr11 69687455 69687497 -52156359 + AT_rich Low_complexity Low_complexity 1 42 0 5 1116 1548 52 5 0 chr11 69687499 69687690 -52156166 - B2_Mm1t SINE B2 0 193 2 5 1116 214 276 132 0 chr11 69687712 69687788 -52156068 - MIRb SINE MIR -155 113 28 5 1116 538 282 8 0 chr11 69688304 69688435 -52155421 + ID_B1 SINE B4 92 223 -1 5 1116 526 289 18 54 chr11 69688439 69688480 -52155376 + RSINE1 SINE B4 3 37 -128 5 1116 2927 21 39 0 chr11 69688480 69688813 -52155043 - ORR1A1 LTR MaLR 0 346 1 5 1116 526 289 18 54 chr11 69688813 69688939 -52154917 + RSINE1 SINE B4 38 164 -1 5 1116 286 292 30 130 chr11 69688940 69688969 -52154887 + B4 SINE B4 72 219 -69 5 1116 751 131 0 44 chr11 69688969 69689105 -52154751 + B1_Mur4 SINE Alu 14 143 -7 5 1116 455 268 64 15 chr11 69689441 69689588 -52154268 - MER20 DNA MER1_type -611 172 25 5 1116 336 83 0 0 chr11 69692121 69692169 -52151687 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1116 243 0 0 0 chr11 69695765 69695792 -52148064 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1116 605 196 335 0 chr11 69696313 69696471 -52147385 + B3 SINE B2 1 211 -5 5 1116 884 133 7 43 chr11 69696471 69696612 -52147244 + B1_Mus1 SINE Alu 1 136 -12 5 1116 972 203 86 0 chr11 69696680 69696877 -52146979 - B3 SINE B2 0 216 3 5 1116 230 279 94 0 chr11 69696881 69696971 -52146885 - MIR SINE MIR -118 150 53 5 1116 282 237 0 17 chr11 69699446 69699506 -52144350 - ID4_ SINE ID -16 67 9 5 1116 938 153 0 0 chr11 69699614 69699751 -52144105 + B1_Mus1 SINE Alu 1 137 -11 5 1116 409 227 160 21 chr11 69699779 69699923 -52143933 - RSINE1 SINE B4 0 165 2 5 1116 264 271 29 0 chr11 69700965 69701035 -52142821 - PB1D10 SINE Alu -37 80 9 5 1116 481 282 26 0 chr11 69701194 69701311 -52142545 - B1F SINE Alu -3 146 27 5 1116 360 240 62 0 chr11 69701321 69701417 -52142439 + MER91B DNA Tip100 89 190 0 5 1116 218 350 143 17 chr11 69701428 69701666 -52142190 + L2 LINE L2 2815 3082 -337 5 1116 447 246 0 18 chr11 69701695 69701807 -52142049 + PB1D10 SINE Alu 1 110 -7 5 1116 506 225 34 7 chr11 69701807 69701826 -52142030 + ID_B1 SINE B4 82 227 -65 5 1116 1168 74 0 7 chr11 69701870 69702019 -52141837 + B1_Mus1 SINE Alu 1 148 0 5 1116 486 0 0 0 chr11 69702020 69702074 -52141782 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1116 700 183 14 40 chr11 69702219 69702230 -52141626 - B1_Mur3 SINE Alu 0 149 140 5 1116 1206 49 7 0 chr11 69702230 69702373 -52141483 - B1_Mus2 SINE Alu -2 145 2 5 1116 504 0 0 0 chr11 69702373 69702429 -52141427 + (TTA)n Simple_repeat Simple_repeat 2 57 0 5 1116 700 183 14 40 chr11 69702429 69702564 -52141292 - B1_Mur3 SINE Alu -10 139 7 5 1116 924 169 7 0 chr11 69705480 69705628 -52138228 + B1_Mur1 SINE Alu 1 149 0 5 1116 1221 54 0 13 chr11 69705628 69705777 -52138079 + B1_Mus1 SINE Alu 1 148 0 5 1116 759 137 113 15 chr11 69705869 69705919 -52137937 - B1_Mm SINE Alu -1 146 98 5 1116 702 44 0 0 chr11 69705919 69706009 -52137847 + (TC)n Simple_repeat Simple_repeat 1 90 0 5 1116 759 137 113 15 chr11 69706009 69706091 -52137765 - B1_Mm SINE Alu -50 97 2 5 1116 291 238 83 0 chr11 69706146 69706230 -52137626 + RSINE1 SINE B4 44 134 -31 5 1116 510 46 0 0 chr11 69706237 69706302 -52137554 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1116 611 149 43 9 chr11 69706332 69706447 -52137409 + B1_Mur1 SINE Alu 31 149 0 5 1116 599 300 24 57 chr11 69706475 69706687 -52137169 - B4 SINE B4 -81 211 7 5 1116 234 258 77 46 chr11 69706693 69706823 -52137033 + L1MC4a LINE L1 7704 7837 -45 5 1116 1536 54 16 0 chr11 69706860 69707044 -52136812 + B2_Mm2 SINE B2 2 188 -7 5 1116 1063 222 19 14 chr11 69707064 69707274 -52136582 + B3 SINE B2 1 211 -5 5 1116 465 248 317 18 chr11 69707306 69707470 -52136386 + ID_B1 SINE B4 5 217 -7 5 1116 348 24 0 0 chr11 69707495 69707536 -52136320 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1116 500 231 86 36 chr11 69707542 69707681 -52136175 - B1_Mur3 SINE Alu -3 146 1 5 1116 494 195 0 0 chr11 69707688 69707775 -52136081 - PB1D9 SINE Alu -31 89 3 5 1116 1145 59 0 0 chr11 69707792 69707928 -52135928 - B1_Mus2 SINE Alu -10 137 2 5 1116 22 56 0 0 chr11 69708031 69708067 -52135789 + AT_rich Low_complexity Low_complexity 1 36 0 5 1116 418 212 14 0 chr11 69708516 69708611 -52135245 - B1F SINE Alu 0 120 17 5 1116 221 329 12 0 chr11 69708545 69708627 -52135229 - B4A SINE B4 -125 167 85 5 1116 214 250 32 64 chr11 69709202 69709248 -52134608 + MIRb SINE MIR 52 99 -169 5 1116 713 187 82 7 chr11 69709248 69709383 -52134473 + B1_Mur1 SINE Alu 1 145 -4 5 1116 214 250 32 64 chr11 69709383 69709430 -52134426 + MIRb SINE MIR 100 142 -126 5 1116 575 130 120 0 chr11 69709448 69709556 -52134300 + B1_Mus2 SINE Alu 11 131 -16 5 1116 2943 60 37 61 chr11 69709556 69709763 -52134093 - MTB LTR MaLR 0 400 197 5 1116 1385 91 43 0 chr11 69709763 69709949 -52133907 - B2_Mm2 SINE B2 -1 194 1 5 1116 2943 60 37 61 chr11 69709949 69710151 -52133705 - MTB LTR MaLR -204 196 1 5 1116 560 120 122 49 chr11 69710151 69710165 -52133691 + B1_Mur4 SINE Alu 130 143 -7 5 1116 328 312 80 66 chr11 69710251 69710388 -52133468 + RSINE1 SINE B4 2 140 -25 5 1116 228 67 0 0 chr11 69710436 69710466 -52133390 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1116 1206 42 14 0 chr11 69710466 69710610 -52133246 - B1_Mus2 SINE Alu 0 147 2 5 1116 225 0 0 0 chr11 69713095 69713120 -52130736 + (GGA)n Simple_repeat Simple_repeat 2 26 0 5 1116 339 143 23 6 chr11 69713664 69713751 -52130105 + RMER17D2 LTR ERVK 417 503 -306 5 1116 258 56 0 0 chr11 69713751 69713787 -52130069 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1116 223 276 29 36 chr11 69715393 69715532 -52128324 + G-rich Low_complexity Low_complexity 6 143 0 5 1116 378 244 0 35 chr11 69718266 69718351 -52125505 - ID4 SINE ID 0 83 2 5 1116 207 0 0 0 chr11 69718399 69718422 -52125434 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1116 1394 83 0 11 chr11 69718422 69718599 -52125257 - B2_Mm2 SINE B2 -19 176 1 5 1116 1405 96 16 0 chr11 69718627 69718815 -52125041 + B2_Mm2 SINE B2 2 192 -3 5 1116 832 136 28 28 chr11 69723312 69723456 -52120400 + B1_Mur4 SINE Alu 7 150 0 5 1116 247 324 15 0 chr11 69723527 69723595 -52120261 + ID4 SINE ID 4 72 -11 5 1116 231 204 0 0 chr11 69725719 69725768 -52118088 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1116 612 159 97 0 chr11 69725768 69725881 -52117975 - B1_Mus2 SINE Alu -12 135 12 5 1116 211 214 188 120 chr11 69725852 69725864 -52117992 - B4A SINE B4 -167 125 73 5 1116 446 165 98 11 chr11 69725864 69725956 -52117900 - B2_Mm2 SINE B2 -61 134 35 5 1116 211 214 188 120 chr11 69725956 69725969 -52117887 - B4A SINE B4 -167 72 1 5 1116 180 0 0 0 chr11 69725977 69725997 -52117859 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 5 1116 404 335 27 72 chr11 69725997 69726219 -52117637 - ID_B1 SINE B4 0 224 13 5 1116 376 320 44 55 chr11 69726180 69726362 -52117494 + ID_B1 SINE B4 39 218 -6 5 1116 229 333 12 0 chr11 69728253 69728337 -52115519 + GA-rich Low_complexity Low_complexity 6 90 0 5 1117 539 256 195 6 chr11 69731779 69731948 -52111908 + ID_B1 SINE B4 5 205 -19 5 1117 252 149 0 0 chr11 69734737 69734784 -52109072 + (CCG)n Simple_repeat Simple_repeat 3 49 0 6 1117 22 0 0 0 chr11 69735023 69735045 -52108811 + AT_rich Low_complexity Low_complexity 1 22 0 6 1117 320 235 179 17 chr11 69735930 69736047 -52107809 + B1_Mus2 SINE Alu 4 139 -8 6 1117 716 131 67 37 chr11 69736074 69736209 -52107647 - B1_Mus2 SINE Alu 0 147 9 6 1117 238 326 35 0 chr11 69736412 69736498 -52107358 + PB1D10 SINE Alu 24 112 -37 6 1117 239 220 0 106 chr11 69736519 69736585 -52107271 + ID_B1 SINE B4 103 161 -63 6 1117 335 253 176 0 chr11 69736585 69736676 -52107180 + PB1D10 SINE Alu 3 109 -8 6 1117 261 0 0 0 chr11 69737057 69737086 -52106770 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1117 657 212 30 0 chr11 69737142 69737274 -52106582 - B1_Mur2 SINE Alu -11 138 3 6 1117 382 175 24 48 chr11 69737452 69737536 -52106320 - B1_Mur4 SINE Alu 0 150 69 6 1117 492 290 8 16 chr11 69737518 69737644 -52106212 - B3A SINE B2 -72 126 2 6 1117 260 208 74 49 chr11 69737690 69737771 -52106085 - RSINE1 SINE B4 -1 164 82 6 1117 777 181 42 0 chr11 69737996 69738140 -52105716 - B1_Mur4 SINE Alu 0 150 1 6 1117 469 288 0 120 chr11 69738174 69738332 -52105524 + B1F2 SINE Alu 6 144 -5 6 1117 1057 115 0 13 chr11 69738342 69738480 -52105376 + B1_Mus1 SINE Alu 1 138 -10 6 1117 207 0 0 0 chr11 69738480 69738503 -52105353 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1117 1057 115 0 13 chr11 69738503 69738514 -52105342 + B1_Mus1 SINE Alu 139 148 0 6 1117 823 92 0 15 chr11 69738586 69738719 -52105137 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 6 1117 737 255 59 15 chr11 69738720 69738923 -52104933 - Charlie12 DNA MER1_type -368 2505 2294 6 1117 285 205 0 71 chr11 69738965 69739049 -52104807 + Lx9 LINE L1 7567 7644 0 6 1117 426 190 13 0 chr11 69739077 69739156 -52104700 + PB1D9 SINE Alu 1 80 -40 6 1117 873 35 9 0 chr11 69739162 69739275 -52104581 + B1_Mus2 SINE Alu 21 134 -13 6 1117 343 192 137 0 chr11 69739285 69739358 -52104498 + B1_Mur2 SINE Alu 67 149 0 6 1117 183 42 0 0 chr11 69739363 69739387 -52104469 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 6 1117 273 279 108 58 chr11 69739690 69739733 -52104123 - Charlie12 DNA MER1_type -1002 1871 1831 6 1117 1171 96 78 6 chr11 69739733 69739912 -52103944 + B2_Mm1a SINE B2 2 193 0 6 1117 273 279 108 58 chr11 69739912 69740108 -52103748 - Charlie12 DNA MER1_type -1043 1830 1621 6 1117 1025 110 223 11 chr11 69740113 69740288 -52103568 - B3 SINE B2 -4 212 1 6 1117 820 153 138 23 chr11 69740338 69740512 -52103344 - B2_Mm2 SINE B2 0 195 2 6 1117 386 0 0 39 chr11 69740524 69740575 -52103281 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 6 1117 1021 43 7 0 chr11 69740575 69740713 -52103143 - B1_Mus1 SINE Alu 0 148 10 6 1117 469 244 43 154 chr11 69740716 69740813 -52103043 - Charlie12 DNA MER1_type -1240 1633 1566 6 1117 773 207 14 0 chr11 69740813 69740958 -52102898 - B1_Mus1 SINE Alu -1 147 1 6 1117 469 244 43 154 chr11 69740958 69741093 -52102763 - Charlie12 DNA MER1_type -1308 1565 1427 6 1117 316 185 48 18 chr11 69741102 69741267 -52102589 + (TG)n Simple_repeat Simple_repeat 1 170 0 6 1117 463 103 34 11 chr11 69741290 69741378 -52102478 + B2_Mm2 SINE B2 103 192 -3 6 1117 309 252 47 88 chr11 69741372 69741520 -52102336 - Charlie12 DNA MER1_type -1772 1101 960 6 1117 808 151 7 14 chr11 69741475 69741616 -52102240 - B1_Mus1 SINE Alu -1 147 8 6 1117 258 333 0 13 chr11 69741624 69741700 -52102156 + RMER30 DNA MER1_type 119 193 -9 6 1117 303 283 0 30 chr11 69741716 69741822 -52102034 + ID2 SINE ID 17 116 -36 6 1117 969 78 41 41 chr11 69742278 69742412 -52101444 + B1_Mus2 SINE Alu 1 135 -12 6 1117 243 0 0 0 chr11 69742412 69742439 -52101417 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1117 969 78 41 41 chr11 69742439 69742450 -52101406 + B1_Mus2 SINE Alu 136 146 -1 6 1117 274 244 53 53 chr11 69742481 69742576 -52101280 + PB1D10 SINE Alu 23 117 0 6 1117 965 202 58 15 chr11 69742579 69742785 -52101071 + B3 SINE B2 2 216 0 6 1117 214 282 127 0 chr11 69742814 69742885 -52100971 + B4 SINE B4 2 81 -211 6 1117 369 0 0 0 chr11 69742929 69742970 -52100886 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1117 925 217 63 19 chr11 69743001 69743208 -52100648 + B3 SINE B2 1 216 0 6 1117 319 299 21 0 chr11 69743281 69743378 -52100478 + BC1_Mm scRNA scRNA 9 107 -45 6 1117 1250 41 0 0 chr11 69743670 69743817 -52100039 - B1_Mus1 SINE Alu -1 147 1 6 1117 341 97 92 0 chr11 69743818 69743885 -52099971 + B1F1 SINE Alu 57 131 -18 6 1117 882 199 122 0 chr11 69743891 69744072 -52099784 + B3 SINE B2 2 204 -12 6 1117 30 0 0 0 chr11 69744074 69744104 -52099752 + AT_rich Low_complexity Low_complexity 1 30 0 6 1117 1074 128 55 22 chr11 69744108 69744291 -52099565 + B2_Mm2 SINE B2 2 190 -5 6 1117 1424 76 11 0 chr11 69744298 69744482 -52099374 + B2_Mm1t SINE B2 1 186 -7 6 1117 379 313 0 38 chr11 69744857 69744990 -52098866 + B1_Mur1 SINE Alu 11 138 -11 6 1117 207 100 0 0 chr11 69745109 69745139 -52098717 + (TTC)n Simple_repeat Simple_repeat 2 31 0 6 1117 1203 54 0 0 chr11 69745139 69745286 -52098570 - B1_Mus1 SINE Alu 0 148 2 6 1117 489 296 28 7 chr11 69745551 69745694 -52098162 + RSINE1 SINE B4 2 147 -18 6 1117 453 160 76 48 chr11 69745754 69745859 -52097997 + B1_Mur4 SINE Alu 41 148 -2 6 1117 297 0 0 0 chr11 69745860 69745893 -52097963 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 6 1117 718 266 21 21 chr11 69745894 69746035 -52097821 - B3 SINE B2 -24 192 52 6 1117 191 36 36 0 chr11 69746035 69746063 -52097793 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1117 718 266 21 21 chr11 69746063 69746113 -52097743 - B3 SINE B2 -165 51 2 6 1117 723 220 0 15 chr11 69746147 69746281 -52097575 - B1_Mm SINE Alu -14 133 2 6 1117 319 278 9 36 chr11 69746458 69746570 -52097286 + ID_B1 SINE B4 116 224 0 6 1117 408 255 108 0 chr11 69746685 69746787 -52097069 + PB1D9 SINE Alu 8 120 0 6 1117 481 203 19 143 chr11 69746812 69746879 -52096977 + ID SINE ID 1 67 -157 6 1117 1265 109 21 16 chr11 69746879 69747066 -52096790 - B2_Mm2 SINE B2 -6 189 2 6 1117 481 203 19 143 chr11 69747066 69747100 -52096756 + ID SINE ID 68 82 -142 6 1117 506 72 0 0 chr11 69747100 69747169 -52096687 + B1_Mus2 SINE Alu 2 70 -77 6 1117 536 52 13 0 chr11 69747168 69747245 -52096611 - B1_Mus1 SINE Alu -69 79 2 6 1117 1324 63 11 64 chr11 69747245 69747432 -52096424 - B2_Mm1t SINE B2 -16 177 1 6 1117 285 286 55 0 chr11 69748408 69748507 -52095349 - PB1D7 SINE Alu 0 117 7 6 1117 398 214 0 23 chr11 69748620 69748706 -52095150 - B1F SINE Alu 0 149 66 6 1117 356 200 50 0 chr11 69748714 69748794 -52095062 + PB1D10 SINE Alu 34 117 0 6 1117 180 200 0 0 chr11 69749412 69749457 -52094399 + (CGG)n Simple_repeat Simple_repeat 2 46 0 6 1117 183 262 0 0 chr11 69749484 69749564 -52094292 + (CGG)n Simple_repeat Simple_repeat 2 81 0 6 1117 26 0 0 0 chr11 69749596 69749622 -52094234 + GC_rich Low_complexity Low_complexity 1 26 0 6 1117 473 181 211 37 chr11 69752182 69752343 -52091513 + MER5A DNA MER1_type 1 189 0 6 1117 1376 80 40 0 chr11 69755344 69755519 -52088337 + B2_Mm2 SINE B2 2 183 -12 6 1117 308 195 96 12 chr11 69755651 69755734 -52088122 + PB1D7 SINE Alu 14 103 -17 6 1117 913 40 108 39 chr11 69755777 69755907 -52087949 + B1_Mm SINE Alu 1 139 -8 6 1117 292 230 40 0 chr11 69757912 69757986 -52085870 - PB1D10 SINE Alu -9 108 32 6 1117 291 285 68 46 chr11 69760459 69760629 -52083227 + MIRc SINE MIR 72 248 -14 6 1117 291 54 0 0 chr11 69762030 69762067 -52081789 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1117 1269 171 24 0 chr11 69762956 69763166 -52080690 + B3 SINE B2 1 215 -1 6 1117 1680 31 0 10 chr11 69763169 69763364 -52080492 + B2_Mm1a SINE B2 1 193 0 6 1117 352 221 20 19 chr11 69763397 69763498 -52080358 + B1_Mur4 SINE Alu 54 147 0 6 1117 317 259 151 25 chr11 69763534 69763653 -52080203 - B1F SINE Alu 0 149 16 6 1117 309 313 20 0 chr11 69763737 69763836 -52080020 + CT-rich Low_complexity Low_complexity 3 103 0 6 1117 323 256 49 0 chr11 69763837 69763919 -52079937 - B1F1 SINE Alu -40 109 24 6 1117 937 211 84 15 chr11 69763992 69764194 -52079662 + B3 SINE B2 1 216 0 6 1117 363 73 0 0 chr11 69765295 69765350 -52078506 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1117 741 218 24 83 chr11 69765894 69766099 -52077757 - B3A SINE B2 -4 194 2 6 1117 773 167 65 0 chr11 69766159 69766297 -52077559 + B1_Mur1 SINE Alu 2 148 -1 6 1117 813 166 14 14 chr11 69766297 69766443 -52077413 + B1_Mus1 SINE Alu 1 147 -1 6 1117 460 278 31 8 chr11 69766459 69766586 -52077270 + RSINE1 SINE B4 3 132 -33 6 1117 236 341 0 22 chr11 69766628 69766718 -52077138 + RSINE1 SINE B4 11 98 -67 6 1117 387 0 0 0 chr11 69766748 69766791 -52077065 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1117 549 261 157 6 chr11 69766819 69766985 -52076871 + ID_B1 SINE B4 1 191 -33 6 1117 198 0 0 0 chr11 69766998 69767020 -52076836 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1117 249 57 0 0 chr11 69767122 69767157 -52076699 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1117 1188 74 0 0 chr11 69767512 69767660 -52076196 + B1_Mus1 SINE Alu 1 148 0 6 1117 489 192 19 66 chr11 69767676 69767712 -52076144 - PB1D7 SINE Alu -13 107 72 6 1117 4372 10 0 30 chr11 69767712 69768209 -52075647 + LTRIS_Mm LTR ERV1 1 482 0 6 1117 489 192 19 66 chr11 69768209 69768278 -52075578 - PB1D7 SINE Alu -49 71 7 6 1117 429 20 0 0 chr11 69768291 69768341 -52075515 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 6 1117 1016 131 7 0 chr11 69768347 69768492 -52075364 - B1_Mus2 SINE Alu 0 147 2 6 1117 364 255 169 7 chr11 69768571 69768713 -52075143 - RSINE1 SINE B4 0 165 1 6 1117 451 291 76 33 chr11 69768780 69768988 -52074868 + ID_B1 SINE B4 39 246 -46 6 1117 311 0 0 25 chr11 69769083 69769123 -52074733 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 1117 1208 43 0 0 chr11 69769123 69769261 -52074595 - B1_Mm SINE Alu -9 138 1 7 1117 241 253 144 46 chr11 69769303 69769456 -52074400 - L1M5 LINE L1 -545 5649 5482 7 1117 412 314 14 21 chr11 69769467 69769607 -52074249 + MIR SINE MIR 32 170 -92 7 1117 245 192 187 27 chr11 69769722 69769797 -52074059 - L1MA10 LINE L1 -69 6265 6179 7 1117 695 218 0 21 chr11 69769816 69769961 -52073895 - B3 SINE B2 -8 208 67 7 1117 872 177 0 7 chr11 69770003 69770151 -52073705 - B1_Mus1 SINE Alu 0 148 2 7 1117 266 254 156 47 chr11 69770151 69770180 -52073676 - RLTR25A LTR ERVK -630 473 431 7 1117 517 254 29 14 chr11 69770175 69770315 -52073541 - ID_B1 SINE B4 -1 223 82 7 1117 180 0 0 0 chr11 69770355 69770375 -52073481 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1117 290 290 25 6 chr11 69770412 69770507 -52073349 - RSINE1 SINE B4 -193 99 2 7 1117 1206 68 0 0 chr11 69770627 69770773 -52073083 - B1_Mus1 SINE Alu -1 147 2 7 1117 1176 78 43 43 chr11 69770781 69770968 -52072888 - B2_Mm2 SINE B2 -8 187 1 7 1117 387 292 136 17 chr11 69770968 69771171 -52072685 - L1M3 LINE L1 -476 5704 5474 7 1117 891 181 0 27 chr11 69771257 69771405 -52072451 + B1_Mur3 SINE Alu 1 144 -5 7 1117 417 38 0 0 chr11 69771405 69771412 -52072444 + (GAA)n Simple_repeat Simple_repeat 3 9 0 7 1117 1047 147 0 0 chr11 69771412 69771589 -52072267 + (GGA)n Simple_repeat Simple_repeat 2 178 0 7 1117 417 38 0 0 chr11 69771589 69771634 -52072222 + (GAA)n Simple_repeat Simple_repeat 1 45 0 7 1117 224 77 0 25 chr11 69771685 69771725 -52072131 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 7 1117 1231 41 7 0 chr11 69771727 69771874 -52071982 - B1_Mus1 SINE Alu 0 148 1 7 1117 867 247 10 53 chr11 69771875 69772084 -52071772 - MTD LTR MaLR -208 211 12 7 1117 297 0 0 0 chr11 69772132 69772165 -52071691 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1117 929 233 5 55 chr11 69772244 69772462 -52071394 + B3 SINE B2 4 210 -6 7 1117 343 226 164 31 chr11 69772504 69772632 -52071224 - B1_Mur4 SINE Alu 0 150 6 7 1117 200 111 28 0 chr11 69772639 69772675 -52071181 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 7 1117 1220 54 0 0 chr11 69772676 69772823 -52071033 - B1_Mus1 SINE Alu 0 148 2 7 1117 1438 249 82 28 chr11 69772840 69773232 -52070624 - Lx6 LINE L1 -2 7458 7046 7 1117 372 196 1 1 chr11 69773530 69773617 -52070239 + B1_Mur1 SINE Alu 38 124 -25 7 1117 365 58 0 19 chr11 69773621 69773674 -52070182 + (CATA)n Simple_repeat Simple_repeat 2 53 0 7 1117 641 130 97 8 chr11 69773682 69773806 -52070050 + B1_Mus1 SINE Alu 13 147 -1 7 1117 285 214 0 54 chr11 69773832 69773906 -52069950 - MER20 DNA MER1_type -148 71 2 7 1117 1154 56 14 0 chr11 69773911 69774055 -52069801 + B1_Mus2 SINE Alu 2 147 0 7 1117 783 239 85 10 chr11 69774225 69774424 -52069432 + B3 SINE B2 1 214 -2 7 1117 244 281 69 50 chr11 69774704 69774805 -52069051 + PB1D10 SINE Alu 7 109 -8 7 1117 438 274 0 9 chr11 69774818 69774925 -52068931 + PB1D10 SINE Alu 1 106 -11 7 1117 567 0 0 0 chr11 69774925 69774988 -52068868 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 7 1117 183 80 0 0 chr11 69775844 69775869 -52067987 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1117 888 172 0 0 chr11 69775890 69776111 -52067745 + (TG)n Simple_repeat Simple_repeat 1 221 0 7 1117 888 108 0 23 chr11 69776206 69776339 -52067517 - B1_Mus1 SINE Alu -17 131 2 7 1117 638 175 25 0 chr11 69776350 69776470 -52067386 + B1_Mur2 SINE Alu 22 144 -5 7 1117 25 31 0 0 chr11 69776473 69776505 -52067351 + AT_rich Low_complexity Low_complexity 1 32 0 7 1117 634 217 23 0 chr11 69776506 69776635 -52067221 - B3 SINE B2 -84 132 1 7 1117 223 311 11 11 chr11 69776710 69776801 -52067055 - L2 LINE L2 -657 2762 2672 7 1117 575 288 14 7 chr11 69776970 69777117 -52066739 + B1_Mur1 SINE Alu 1 148 -1 7 1117 439 205 141 8 chr11 69777356 69777532 -52066324 + B3 SINE B2 1 195 0 7 1117 414 0 0 0 chr11 69777676 69777722 -52066134 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1117 1295 83 44 11 chr11 69777857 69778040 -52065816 - B2_Mm2 SINE B2 -4 191 3 7 1117 1197 76 0 0 chr11 69780846 69780991 -52062865 + B1_Mus2 SINE Alu 2 146 -1 7 1117 1112 73 0 7 chr11 69782790 69782928 -52060928 - B1_Mm SINE Alu -10 137 1 7 1117 238 106 0 41 chr11 69783169 69783218 -52060638 - B1_Mur4 SINE Alu 0 150 104 7 1117 260 333 73 24 chr11 69783265 69783388 -52060468 + MIRb SINE MIR 32 160 -108 7 1117 290 265 65 101 chr11 69783388 69783556 -52060300 + ID_B1 SINE B4 63 224 0 7 1117 535 188 98 38 chr11 69783424 69783557 -52060299 + B1_Mur1 SINE Alu 9 149 0 7 1117 228 288 0 121 chr11 69783596 69783607 -52060249 - PB1D10 SINE Alu -8 109 37 7 1117 232 258 28 83 chr11 69783607 69783679 -52060177 - ID_B1 SINE B4 -39 185 118 7 1117 358 190 196 90 chr11 69783721 69783854 -52060002 + MTC LTR MaLR 5 151 -270 7 1117 851 128 6 77 chr11 69783843 69784012 -52059844 + MTC LTR MaLR 264 420 -1 7 1117 251 100 0 57 chr11 69784551 69784604 -52059252 + T-rich Low_complexity Low_complexity 1 50 0 7 1117 1714 31 0 0 chr11 69784604 69784797 -52059059 - B2_Mm1a SINE B2 0 193 1 7 1117 1158 76 7 0 chr11 69784901 69785046 -52058810 - B1_Mus2 SINE Alu -1 146 1 7 1117 424 319 9 0 chr11 69785046 69785159 -52058697 - RSINE1 SINE B4 -46 119 6 7 1117 491 158 213 16 chr11 69785200 69785322 -52058534 - B1_Mur1 SINE Alu -3 146 1 7 1117 189 0 0 0 chr11 69785323 69785344 -52058512 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1117 520 209 131 41 chr11 69785359 69785504 -52058352 - B3A SINE B2 -38 160 3 7 1117 458 246 103 0 chr11 69785591 69785717 -52058139 - ID_B1 SINE B4 0 224 86 7 1117 380 307 114 18 chr11 69785903 69786069 -52057787 - ID_B1 SINE B4 -1 223 42 7 1117 1128 89 0 20 chr11 69786161 69786310 -52057546 + B1_Mus2 SINE Alu 2 147 0 7 1117 479 300 33 7 chr11 69786347 69786498 -52057358 + ID_B1 SINE B4 1 155 -69 7 1117 238 236 53 53 chr11 69786435 69786529 -52057327 + PB1D10 SINE Alu 8 101 -16 7 1117 1439 278 25 21 chr11 69786558 69787028 -52056828 + Lx9 LINE L1 7011 7482 -162 7 1117 872 259 19 5 chr11 69787389 69787595 -52056261 + B3 SINE B2 3 211 -5 7 1117 498 288 109 16 chr11 69787704 69787951 -52055905 + B4A SINE B4 2 271 -21 7 1117 1177 68 0 0 chr11 69788066 69788213 -52055643 - B1_Mus1 SINE Alu 0 148 2 7 1117 624 236 14 20 chr11 69788215 69788362 -52055494 - B1_Mur3 SINE Alu -3 146 1 7 1117 193 368 0 0 chr11 69788879 69788947 -52054909 + MIR SINE MIR 12 79 -183 7 1117 297 364 44 38 chr11 69789022 69789205 -52054651 + B3A SINE B2 8 198 0 7 1117 543 131 48 39 chr11 69789225 69789328 -52054528 + B1_Mus1 SINE Alu 37 140 -8 7 1117 414 0 0 0 chr11 69789351 69789397 -52054459 + (CAACC)n Simple_repeat Simple_repeat 4 49 0 7 1117 630 214 0 0 chr11 69789415 69789541 -52054315 + B1_Mur1 SINE Alu 17 142 -7 7 1117 261 331 26 41 chr11 69789606 69789743 -52054113 + L2b LINE L2 3250 3384 -42 7 1117 221 233 0 0 chr11 69790183 69790226 -52053630 + B3A SINE B2 85 127 -71 7 1117 231 345 22 44 chr11 69790269 69790360 -52053496 - PB1D10 SINE Alu -6 111 23 7 1117 387 321 158 13 chr11 69790284 69790442 -52053414 - ID_B1 SINE B4 -43 181 1 7 1117 1261 41 0 0 chr11 69790462 69790609 -52053247 - B1_Mus1 SINE Alu 0 148 2 7 1117 627 254 101 24 chr11 69790670 69790839 -52053017 - B3A SINE B2 -16 182 1 7 1117 700 174 80 25 chr11 69790862 69791048 -52052808 - B3 SINE B2 0 195 1 7 1117 686 165 8 8 chr11 69791053 69791175 -52052681 - B1_Mur1 SINE Alu 0 149 28 7 1117 690 190 29 0 chr11 69791256 69791393 -52052463 + B1_Mur3 SINE Alu 6 146 -3 7 1117 760 37 167 0 chr11 69791451 69791559 -52052297 + L1Md_A LINE L1 6457 6582 0 7 1117 1103 122 48 42 chr11 69791744 69791933 -52051923 + B2_Mm2 SINE B2 1 190 -5 7 1117 984 107 11 3 chr11 69791933 69792085 -52051771 - B2_Mm2 SINE B2 -14 202 36 7 1117 244 259 81 12 chr11 69792079 69792165 -52051691 + B3 SINE B2 125 216 0 7 1117 575 200 38 15 chr11 69792300 69792432 -52051424 - B1_Mur1 SINE Alu -2 147 13 7 1117 692 101 227 0 chr11 69792434 69792553 -52051303 + B1_Mm SINE Alu 2 147 0 7 1117 333 314 29 21 chr11 69792611 69792751 -52051105 + B1F SINE Alu 1 141 -8 7 1117 36 23 0 0 chr11 69794497 69794540 -52049316 + GC_rich Low_complexity Low_complexity 1 43 0 7 1117 336 268 21 0 chr11 69794580 69794677 -52049179 + C-rich Low_complexity Low_complexity 2 100 0 7 1117 36 70 0 0 chr11 69794906 69794977 -52048879 + GC_rich Low_complexity Low_complexity 1 71 0 7 1117 853 52 0 0 chr11 69795872 69795987 -52047869 - B1_Mm SINE Alu -32 115 1 7 1117 237 65 0 0 chr11 69796377 69796408 -52047448 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 1117 423 341 99 82 chr11 69798409 69798933 -52044923 - MT2A LTR ERVL 0 533 1 7 1117 598 278 38 27 chr11 69798987 69799172 -52044684 + B3A SINE B2 2 188 -10 8 1117 227 349 70 79 chr11 69799175 69799402 -52044454 - MLT2B5 LTR ERVL -35 520 296 8 1117 651 182 15 45 chr11 69799330 69799462 -52044394 + B1_Mus1 SINE Alu 10 137 -11 8 1117 1746 21 0 0 chr11 69799490 69799683 -52044173 - B2_Mm1a SINE B2 0 193 1 8 1117 2159 264 46 72 chr11 69799694 69800413 -52043443 - MTC-int LTR MaLR -266 1314 380 8 1117 1082 72 43 0 chr11 69800413 69800552 -52043304 - B1_Mm SINE Alu -1 146 2 8 1117 873 351 71 122 chr11 69800552 69800822 -52043034 - MTC-int LTR MaLR -906 674 432 8 1117 922 85 85 0 chr11 69800822 69800952 -52042904 + B1_Mus1 SINE Alu 2 142 -6 8 1117 873 351 71 122 chr11 69800952 69801389 -52042467 - MTC-int LTR MaLR -1149 431 4 8 1117 993 211 122 37 chr11 69801535 69801805 -52042051 + MTD LTR MaLR 127 419 0 8 1117 253 191 13 93 chr11 69802496 69802571 -52041285 - ID_B1 SINE B4 -2 222 154 8 1117 315 269 115 0 chr11 69803102 69803206 -52040650 - PB1D10 SINE Alu 0 117 2 8 1117 276 100 0 0 chr11 69805797 69805837 -52038019 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 1117 858 152 0 52 chr11 69806450 69806603 -52037253 - B1_Mur4 SINE Alu -1 149 5 8 1117 360 250 25 0 chr11 69806605 69806685 -52037171 - B1F2 SINE Alu -49 100 19 8 1117 239 333 121 33 chr11 69806718 69806752 -52037104 + B4 SINE B4 60 172 -120 8 1117 406 219 0 110 chr11 69806752 69806870 -52036986 + PB1D9 SINE Alu 15 119 -1 8 1117 239 333 121 33 chr11 69806870 69806890 -52036966 + B4 SINE B4 173 246 -46 8 1117 284 314 21 133 chr11 69806932 69807075 -52036781 + ID_B1 SINE B4 64 190 -34 8 1117 1243 55 0 0 chr11 69807093 69807239 -52036617 - B1_Mm SINE Alu 0 147 2 8 1117 636 50 0 0 chr11 69807254 69807334 -52036522 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 8 1117 1109 59 0 0 chr11 69807335 69807470 -52036386 - B1_Mm SINE Alu -12 135 1 8 1117 335 41 0 20 chr11 69807473 69807523 -52036333 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1117 948 152 0 0 chr11 69807523 69807661 -52036195 - B1_Mur4 SINE Alu -10 140 3 8 1117 194 0 0 37 chr11 69809281 69809308 -52034548 + (GGA)n Simple_repeat Simple_repeat 1 26 0 8 1117 21 0 0 0 chr11 69810374 69810395 -52033461 + GC_rich Low_complexity Low_complexity 1 21 0 8 1117 213 178 0 0 chr11 69812381 69812426 -52031430 + GA-rich Low_complexity Low_complexity 2 46 0 8 1117 410 239 41 66 chr11 69814937 69815058 -52028798 - PB1D7 SINE Alu -1 119 2 8 1117 1001 143 0 7 chr11 69815364 69815512 -52028344 + B1_Mus1 SINE Alu 2 148 0 8 1117 624 255 79 11 chr11 69815512 69815694 -52028162 - B3 SINE B2 -7 209 14 8 1117 274 326 23 42 chr11 69815687 69815830 -52028026 - B1_Mur4 SINE Alu -11 139 2 8 1117 214 317 58 0 chr11 69816301 69816405 -52027451 + MIR SINE MIR 47 156 -106 8 1117 682 272 17 17 chr11 69816676 69816848 -52027008 - B3 SINE B2 -44 172 1 8 1117 305 254 82 66 chr11 69817543 69817581 -52026275 + MT2B LTR ERVL 117 156 -445 8 1117 443 209 12 0 chr11 69817581 69817667 -52026189 + B1_Mur3 SINE Alu 1 87 -62 8 1117 337 302 27 73 chr11 69817720 69817870 -52025986 + B3A SINE B2 48 190 -8 8 1117 810 127 39 8 chr11 69818025 69818152 -52025704 - B1_Mus1 SINE Alu -13 135 5 8 1117 248 0 31 0 chr11 69818159 69818191 -52025665 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1117 226 218 55 0 chr11 69818221 69818276 -52025580 - B1_Mus1 SINE Alu -89 59 2 8 1117 204 179 0 0 chr11 69819326 69819365 -52024491 + C-rich Low_complexity Low_complexity 1 39 0 8 1117 448 219 187 0 chr11 69820168 69820291 -52023565 + B1_Mus2 SINE Alu 2 147 0 8 1117 1390 113 0 10 chr11 69820305 69820501 -52023355 + B2_Mm2 SINE B2 2 195 0 8 1117 422 224 0 0 chr11 69821073 69821158 -52022698 + PB1D7 SINE Alu 34 118 -2 8 1117 592 187 24 31 chr11 69827383 69827510 -52016346 - B1_Mur3 SINE Alu -23 126 1 8 1117 335 234 8 123 chr11 69827405 69827527 -52016329 - MT2B LTR ERVL -344 257 150 8 1117 421 268 96 25 chr11 69829495 69829652 -52014204 - B3A SINE B2 0 198 31 8 1117 1139 102 0 0 chr11 69829694 69829841 -52014015 - B1_Mus1 SINE Alu -1 147 1 8 1117 1400 86 21 0 chr11 69829843 69830030 -52013826 - B2_Mm2 SINE B2 -3 192 2 8 1117 526 302 35 54 chr11 69830038 69830103 -52013753 - B3A SINE B2 0 216 147 8 1117 315 0 0 0 chr11 69830103 69830138 -52013718 + (TA)n Simple_repeat Simple_repeat 2 36 0 8 1117 526 296 32 49 chr11 69830138 69830283 -52013573 - B3A SINE B2 -50 148 11 8 1117 328 188 196 10 chr11 69830336 69830438 -52013418 - RSINE1 SINE B4 -44 121 1 8 1117 218 192 0 19 chr11 69831913 69831966 -52011890 + CT-rich Low_complexity Low_complexity 2 53 0 8 1117 255 256 0 47 chr11 69832227 69832313 -52011543 + C-rich Low_complexity Low_complexity 5 86 0 8 1117 225 0 0 0 chr11 69835570 69835595 -52008261 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1117 621 162 54 0 chr11 69835952 69836063 -52007793 - PB1D9 SINE Alu -2 118 2 8 1117 476 194 0 143 chr11 69836227 69836353 -52007503 + ID_B1 SINE B4 99 206 -18 8 1117 822 38 0 0 chr11 69836361 69836467 -52007389 + (GA)n Simple_repeat Simple_repeat 1 106 0 8 1117 505 320 50 25 chr11 69836469 69836629 -52007227 + RSINE1 SINE B4 2 165 0 8 1117 227 286 15 45 chr11 69837433 69837565 -52006291 + C-rich Low_complexity Low_complexity 2 129 0 8 1117 476 287 13 59 chr11 69838676 69838828 -52005028 - ID_B1 SINE B4 0 224 80 8 1117 822 200 14 0 chr11 69838960 69839105 -52004751 - B1_Mur1 SINE Alu 0 149 3 8 1117 188 0 74 0 chr11 69841189 69841216 -52002640 + (GCTG)n Simple_repeat Simple_repeat 4 32 0 8 1117 297 0 0 0 chr11 69843683 69843716 -52000140 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1117 909 146 7 14 chr11 69845568 69845707 -51998149 + B1_Mur4 SINE Alu 1 138 -12 8 1117 660 231 0 34 chr11 69845728 69845876 -51997980 + ID_B1 SINE B4 66 208 -16 8 1117 266 264 155 27 chr11 69846131 69846142 -51997714 + B4A SINE B4 80 133 -159 8 1117 508 212 0 42 chr11 69846142 69846260 -51997596 + PB1D10 SINE Alu 5 117 0 8 1117 266 264 155 27 chr11 69846260 69846279 -51997577 + B4A SINE B4 134 246 -46 8 1117 1009 140 0 0 chr11 69846576 69846719 -51997137 + B1_Mur3 SINE Alu 1 143 -6 8 1117 195 42 0 0 chr11 69846720 69846744 -51997112 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 8 1117 292 296 12 36 chr11 69846761 69846845 -51997011 - ID4 SINE ID 0 83 2 8 1117 589 244 67 0 chr11 69846960 69847095 -51996761 - B1F1 SINE Alu -5 144 1 8 1117 287 247 205 13 chr11 69847116 69847194 -51996662 - PB1D7 SINE Alu -23 94 2 8 1117 219 364 0 0 chr11 69847145 69847211 -51996645 - B4 SINE B4 -157 135 70 8 1117 572 225 43 0 chr11 69847260 69847398 -51996458 - RSINE1 SINE B4 0 165 22 8 1117 546 189 67 59 chr11 69847424 69847559 -51996297 - B1_Mur2 SINE Alu 0 149 14 8 1117 1612 42 5 5 chr11 69847665 69847858 -51995998 - B2_Mm1a SINE B2 0 193 1 8 1117 774 51 248 0 chr11 69847859 69847976 -51995880 - B1_Mm SINE Alu 0 147 2 8 1117 810 256 5 37 chr11 69848012 69848227 -51995629 - B3 SINE B2 -7 209 2 8 1117 759 166 0 61 chr11 69848457 69848605 -51995251 - B1_Mur1 SINE Alu 0 149 11 8 1117 792 178 7 22 chr11 69848641 69848779 -51995077 - B1_Mur4 SINE Alu -13 137 2 8 1117 186 43 0 0 chr11 69848866 69848889 -51994967 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1117 662 255 7 7 chr11 69848896 69849046 -51994810 - RSINE1 SINE B4 0 165 16 8 1117 533 276 9 0 chr11 69849276 69849392 -51994464 - PB1D7 SINE Alu -1 119 3 8 1117 936 150 13 13 chr11 69849424 69849573 -51994283 - B1_Mur4 SINE Alu 0 150 2 8 1117 243 266 49 37 chr11 69849684 69849766 -51994090 + PB1D10 SINE Alu 35 117 0 8 1117 730 259 113 0 chr11 69849768 69849953 -51993903 + ID_B1 SINE B4 3 208 -16 8 1117 1219 42 0 14 chr11 69849988 69850134 -51993722 - B1_Mus2 SINE Alu -2 145 2 8 1117 1413 89 26 0 chr11 69850153 69850343 -51993513 - B2_Mm2 SINE B2 0 195 1 8 1117 1008 258 22 13 chr11 69850375 69850601 -51993255 + B4A SINE B4 2 229 -63 8 1117 765 196 0 33 chr11 69850601 69850754 -51993102 + B1_Mur2 SINE Alu 1 148 -1 8 1117 278 139 59 153 chr11 69850768 69850853 -51993003 + B4A SINE B4 216 292 0 8 1117 348 24 0 0 chr11 69850853 69850894 -51992962 + (CCA)n Simple_repeat Simple_repeat 1 41 0 8 1117 292 291 21 0 chr11 69851097 69851191 -51992665 + AluF_3 SINE Alu 139 209 -102 8 1117 412 276 17 4 chr11 69851499 69851618 -51992238 - B1F SINE Alu -2 147 2 8 1117 414 196 113 0 chr11 69851826 69851923 -51991933 - PB1D10 SINE Alu -8 109 2 8 1117 236 102 65 48 chr11 69852138 69852200 -51991656 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 8 1117 705 56 0 0 chr11 69853662 69853752 -51990104 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 8 1117 287 178 0 0 chr11 69853953 69853998 -51989858 - ID4_ SINE ID -10 73 29 8 1117 735 59 0 0 chr11 69854547 69854648 -51989208 + (TG)n Simple_repeat Simple_repeat 1 101 0 8 1117 279 0 0 0 chr11 69854683 69854714 -51989142 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1117 223 274 8 42 chr11 69856268 69856386 -51987470 + CT-rich Low_complexity Low_complexity 3 116 0 8 1117 295 296 18 25 chr11 69856613 69856776 -51987080 + CT-rich Low_complexity Low_complexity 4 165 0 8 1117 216 67 0 0 chr11 69858826 69858856 -51985000 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 8 1117 487 293 201 4 chr11 69859329 69859593 -51984263 - MER47B DNA MER2_type 0 418 103 8 1117 414 262 12 9 chr11 69859612 69859752 -51984104 + PB1D10 SINE Alu 10 149 0 9 1117 235 346 12 0 chr11 69859750 69859831 -51984025 - MER47B DNA MER2_type -327 91 10 8 1117 975 132 0 7 chr11 69859899 69860044 -51983812 - B1_Mus1 SINE Alu 0 148 5 9 1117 393 22 0 0 chr11 69860303 69860349 -51983507 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1117 439 223 126 0 chr11 69860872 69860975 -51982881 - PB1D10 SINE Alu -1 116 1 9 1117 21 0 0 0 chr11 69860999 69861020 -51982836 + AT_rich Low_complexity Low_complexity 1 21 0 9 1117 636 239 41 66 chr11 69861020 69861217 -51982639 - B3A SINE B2 -6 192 1 9 139 361 271 98 0 chr11 69861317 69861439 -51982417 - RSINE1 SINE B4 -1 164 31 9 1118 189 107 0 0 chr11 69861482 69861510 -51982346 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 9 1118 645 203 8 0 chr11 69861510 69861638 -51982218 - ID_B1 SINE B4 -11 213 85 9 1118 22 35 0 0 chr11 69861871 69861900 -51981956 + AT_rich Low_complexity Low_complexity 1 29 0 9 1118 562 197 97 16 chr11 69861900 69862024 -51981832 - B1_Mus1 SINE Alu 0 148 15 9 1118 231 375 33 22 chr11 69861945 69862035 -51981821 - MT2B LTR ERVL -344 257 167 9 1118 1464 45 28 0 chr11 69862072 69862248 -51981608 - B2_Mm2 SINE B2 -14 181 1 9 1118 777 213 141 50 chr11 69862269 69862467 -51981389 + B3 SINE B2 1 216 0 9 1118 1206 197 5 0 chr11 69862470 69862673 -51981183 - B3 SINE B2 -11 205 2 9 1118 480 240 78 31 chr11 69863163 69863292 -51980564 + RSINE1 SINE B4 2 136 -29 9 1118 215 0 0 62 chr11 69863313 69863345 -51980511 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 9 1118 314 318 97 19 chr11 69863484 69863638 -51980218 + MIRb SINE MIR 93 258 -10 9 1118 1697 204 28 67 chr11 69864384 69864773 -51979083 + ORR1D1 LTR MaLR 1 374 0 9 1118 229 311 95 0 chr11 69865213 69865287 -51978569 - MTEa LTR MaLR -9 370 290 9 1118 387 0 0 0 chr11 69865409 69865452 -51978404 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1118 311 296 0 36 chr11 69865650 69865734 -51978122 - ID4_ SINE ID -1 82 2 9 1118 1010 304 207 18 chr11 69865845 69866296 -51977560 + MLT1F LTR MaLR 13 548 0 9 1118 264 105 51 26 chr11 69866309 69866387 -51977469 + (TA)n Simple_repeat Simple_repeat 2 81 0 9 1118 227 356 76 0 chr11 69867138 69867270 -51976586 + MIRb SINE MIR 10 151 -117 9 1118 264 77 0 0 chr11 69867686 69867725 -51976131 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1118 780 206 59 0 chr11 69868085 69868221 -51975635 - B1_Mur1 SINE Alu -5 144 1 9 1118 410 201 23 34 chr11 69869991 69870166 -51973690 + G-rich Low_complexity Low_complexity 5 177 0 9 1118 212 265 29 0 chr11 69870281 69870349 -51973507 + CT-rich Low_complexity Low_complexity 1 70 0 9 1118 208 158 17 17 chr11 69871897 69871955 -51971901 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 1118 300 296 99 80 chr11 69871956 69872169 -51971687 + L1MD LINE L1 5132 5348 -798 9 1118 522 340 10 20 chr11 69872391 69872589 -51971267 + B3A SINE B2 2 197 -1 9 1118 21 57 0 0 chr11 69872596 69872631 -51971225 + AT_rich Low_complexity Low_complexity 1 35 0 9 1118 274 316 8 64 chr11 69872765 69872837 -51971019 - Tigger5 DNA MER2_type 0 2406 2340 9 1118 846 266 96 30 chr11 69872837 69873108 -51970748 - B4A SINE B4 0 292 4 9 1118 274 316 8 64 chr11 69873108 69873160 -51970696 - Tigger5 DNA MER2_type -67 2339 2290 9 1118 440 305 12 132 chr11 69873179 69873421 -51970435 - Tigger5 DNA MER2_type -2193 213 1 9 1118 187 29 86 0 chr11 69873860 69873895 -51969961 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 9 1118 649 36 0 0 chr11 69873895 69873979 -51969877 - B1_Mus2 SINE Alu 0 147 64 9 1118 595 165 97 76 chr11 69873979 69874123 -51969733 - B1_Mur3 SINE Alu -1 148 2 9 1118 248 290 133 96 chr11 69874320 69874378 -51969478 - LTR16E1 LTR ERVL -1 537 480 9 1118 1257 17 28 11 chr11 69874378 69874555 -51969301 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 9 1118 248 290 133 96 chr11 69874555 69874574 -51969282 - LTR16E1 LTR ERVL -59 479 472 9 1118 506 196 259 0 chr11 69874574 69874686 -51969170 - B1_Mus1 SINE Alu -7 141 1 9 1118 248 290 133 96 chr11 69874686 69874878 -51968978 - LTR16E1 LTR ERVL -67 471 257 9 1118 1279 47 0 0 chr11 69875106 69875254 -51968602 + B1_Mus1 SINE Alu 1 148 0 9 1118 957 141 0 32 chr11 69875288 69875442 -51968414 + B1_Mur4 SINE Alu 2 150 0 9 1118 472 92 26 26 chr11 69875588 69875666 -51968190 + L1_Mus2 LINE L1 6489 6566 0 9 1118 27 29 0 0 chr11 69875667 69875701 -51968155 + AT_rich Low_complexity Low_complexity 1 34 0 9 1118 988 60 88 15 chr11 69875771 69875907 -51967949 + B1_Mus1 SINE Alu 1 146 -2 9 1118 273 57 0 0 chr11 69876455 69876490 -51967366 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1118 1034 66 66 0 chr11 69876490 69876619 -51967237 - B1_Mus1 SINE Alu -9 139 2 9 1118 1268 174 14 23 chr11 69876651 69876868 -51966988 - B3 SINE B2 0 216 2 9 1118 894 173 0 14 chr11 69876892 69877033 -51966823 - B1_Mur4 SINE Alu -11 139 1 9 1118 542 187 0 0 chr11 69877087 69877178 -51966678 - PB1D10 SINE Alu -15 102 12 9 1118 255 260 47 36 chr11 69877110 69877206 -51966650 - B4A SINE B4 -125 167 72 9 1118 1309 97 23 0 chr11 69878179 69878355 -51965501 + B2_Mm2 SINE B2 2 181 -14 9 1118 315 142 0 39 chr11 69878402 69878469 -51965387 + B2_Mm2 SINE B2 47 109 -107 9 1118 486 0 0 0 chr11 69878477 69878531 -51965325 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 9 1118 1218 55 0 0 chr11 69878732 69878878 -51964978 - B1_Mm SINE Alu 0 147 2 9 1118 545 83 12 0 chr11 69878965 69879049 -51964807 + (CCAA)n Simple_repeat Simple_repeat 4 88 0 9 1118 316 247 32 11 chr11 69879562 69879656 -51964200 - ERVL-E-int LTR ERVL -1153 4514 4419 9 1118 448 215 45 36 chr11 69879768 69879879 -51963977 + B3A SINE B2 46 157 -41 9 1118 660 195 0 0 chr11 69879906 69880070 -51963786 + (CA)n Simple_repeat Simple_repeat 1 164 0 9 1118 362 115 0 0 chr11 69880071 69880123 -51963733 + HAL1-3A_ME LINE L1 1974 2025 -833 9 1118 1682 245 35 93 chr11 69880828 69881317 -51962539 - RLTR18B LTR ERVK -8 504 46 9 1118 1256 128 99 38 chr11 69881317 69881528 -51962328 + URR1A DNA MER1_type 3 226 0 9 1118 1682 245 35 93 chr11 69881528 69881573 -51962283 - RLTR18B LTR ERVK -467 45 1 9 1118 712 214 63 14 chr11 69881956 69882098 -51961758 + B1_Mur2 SINE Alu 1 149 0 9 1118 39 0 0 0 chr11 69882106 69882145 -51961711 + AT_rich Low_complexity Low_complexity 1 39 0 9 1118 1723 16 0 0 chr11 69882501 69882690 -51961166 - B2_Mm1a SINE B2 -3 190 2 9 1118 792 223 7 0 chr11 69882998 69883146 -51960710 + B1_Mur1 SINE Alu 1 149 0 9 1118 1058 174 20 0 chr11 69883899 69884094 -51959762 + B3 SINE B2 15 213 -3 9 1118 21 0 0 0 chr11 69884094 69884115 -51959741 + AT_rich Low_complexity Low_complexity 1 21 0 9 1118 229 385 68 0 chr11 69884369 69884486 -51959370 - MIRb SINE MIR -54 214 90 9 1118 533 115 0 11 chr11 69885196 69885284 -51958572 + (TTTC)n Simple_repeat Simple_repeat 1 87 0 9 1118 848 191 6 0 chr11 69885285 69885463 -51958393 + CT-rich Low_complexity Low_complexity 2 180 0 9 1118 244 225 42 0 chr11 69885472 69885543 -51958313 - L1MA6 LINE L1 -5 6295 6222 9 1118 1062 97 14 0 chr11 69885854 69885999 -51957857 - B1_Mus1 SINE Alu -1 147 1 9 1118 440 361 25 80 chr11 69886025 69886311 -51957545 + MLT1A LTR MaLR 63 332 -42 9 1118 404 234 97 112 chr11 69886401 69886616 -51957240 - B3A SINE B2 -2 214 2 9 1118 331 229 18 138 chr11 69886655 69886822 -51957034 + B1F SINE Alu 2 148 -1 9 1118 514 192 61 0 chr11 69886850 69886949 -51956907 - PB1D9 SINE Alu -15 105 1 9 1118 441 0 0 0 chr11 69887127 69887176 -51956680 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1118 2140 168 58 10 chr11 69888375 69888791 -51955065 - RLTR20B3 LTR ERVK -141 436 1 9 1118 456 279 161 10 chr11 69888791 69888983 -51954873 + Lx9 LINE L1 6681 6901 -743 9 1118 4306 145 60 34 chr11 69888993 69889823 -51954033 - RMER19B LTR ERVK -168 734 1 9 1118 1312 268 146 46 chr11 69889824 69890500 -51953356 + Lx9 LINE L1 6897 7640 -4 9 1118 1455 80 0 5 chr11 69890509 69890698 -51953158 + B2_Mm2 SINE B2 1 188 -7 9 1118 844 186 14 0 chr11 69890705 69890850 -51953006 + B1_Mur3 SINE Alu 1 147 -2 9 1118 279 218 121 51 chr11 69890853 69890877 -51952979 + MTEb LTR MaLR 85 129 -250 9 1118 430 141 0 0 chr11 69890877 69890941 -51952915 + B3 SINE B2 3 66 -150 9 1118 279 218 121 51 chr11 69890941 69891012 -51952844 + MTEb LTR MaLR 130 269 -110 9 1118 180 0 0 0 chr11 69891031 69891051 -51952805 + (C)n Simple_repeat Simple_repeat 1 20 0 9 1118 264 36 34 68 chr11 69891352 69891411 -51952445 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 9 1118 340 222 24 12 chr11 69891540 69891615 -51952241 + MTEb LTR MaLR 268 344 -35 9 1118 735 163 89 0 chr11 69891615 69891750 -51952106 - B1_Mus1 SINE Alu 0 148 2 9 1118 479 283 102 8 chr11 69891751 69891879 -51951977 - B1F SINE Alu 0 149 10 9 1118 1000 49 0 0 chr11 69892288 69892410 -51951446 + B1_Mm SINE Alu 15 136 -11 9 1118 405 70 0 0 chr11 69892410 69892467 -51951389 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 9 1118 1174 48 14 0 chr11 69893083 69893228 -51950628 + B1_Mus1 SINE Alu 2 148 0 9 1118 441 0 0 0 chr11 69893235 69893284 -51950572 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1118 638 264 81 67 chr11 69893444 69893667 -51950189 + ORR1E LTR MaLR 1 226 -133 9 1118 267 270 0 0 chr11 69893691 69893754 -51950102 + ORR1E LTR MaLR 55 117 -242 9 1118 1117 163 98 5 chr11 69893922 69894125 -51949731 - URR1B DNA MER1_type 0 225 4 9 1118 184 304 155 10 chr11 69894179 69894282 -51949574 - L3 LINE CR1 -1115 3374 3257 9 1118 965 233 200 22 chr11 69894311 69894631 -51949225 + MTE2b LTR MaLR 3 379 0 9 1118 1782 189 54 23 chr11 69895046 69895221 -51948635 - ORR1D1 LTR MaLR -12 362 177 9 1118 654 13 0 0 chr11 69895221 69895296 -51948560 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1118 1782 189 54 23 chr11 69895296 69895471 -51948385 - ORR1D1 LTR MaLR -198 176 2 9 1118 841 229 63 24 chr11 69895600 69895806 -51948050 - B3 SINE B2 -1 215 2 1 1118 486 88 0 0 chr11 69896289 69896357 -51947499 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1118 624 282 74 8 chr11 69896403 69896626 -51947230 - B4A SINE B4 -27 265 31 1 1118 282 324 9 38 chr11 69896736 69896842 -51947014 - PB1D10 SINE Alu -5 112 10 1 1118 459 0 0 0 chr11 69896949 69897000 -51946856 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1118 933 79 0 0 chr11 69897000 69897126 -51946730 + (GA)n Simple_repeat Simple_repeat 1 127 0 1 1118 892 226 66 74 chr11 69897160 69897404 -51946452 - B4 SINE B4 -49 243 2 1 1118 848 181 0 32 chr11 69897811 69897965 -51945891 + B1_Mur4 SINE Alu 2 150 0 1 1118 300 111 0 0 chr11 69897968 69898013 -51945843 + (AGGGGG)n Simple_repeat Simple_repeat 1 45 0 1 1118 186 43 0 0 chr11 69898486 69898509 -51945347 + (GGGTG)n Simple_repeat Simple_repeat 2 24 0 1 1118 246 62 0 0 chr11 69898775 69898807 -51945049 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1118 879 226 19 33 chr11 69898849 69899059 -51944797 - B3 SINE B2 -1 215 9 1 1118 453 54 0 0 chr11 69899248 69899304 -51944552 - B1_Mus1 SINE Alu -71 77 22 1 1118 1038 110 0 0 chr11 69899314 69899450 -51944406 + B1_Mus2 SINE Alu 2 137 -10 1 1118 435 327 18 0 chr11 69899479 69899592 -51944264 - PB1 SINE Alu -8 119 5 1 1118 211 341 21 83 chr11 69899535 69899679 -51944177 - B4 SINE B4 -147 145 11 1 1118 2663 42 0 6 chr11 69899747 69900061 -51943795 + MERVL-int LTR ERVL 4616 4927 -558 1 1118 1716 212 30 6 chr11 69900206 69900571 -51943285 + ORR1D1 LTR MaLR 1 374 0 1 1118 545 219 0 0 chr11 69900714 69900810 -51943046 + ORR1E LTR MaLR 6 101 -258 1 1118 619 171 9 0 chr11 69901371 69901476 -51942380 - ORR1A2 LTR MaLR -220 107 2 1 1118 627 279 188 13 chr11 69901479 69901777 -51942079 + Kanga1a DNA Tc2 213 562 -192 1 1118 603 165 20 89 chr11 69901786 69901926 -51941930 - B1F2 SINE Alu -1 148 18 1 1118 276 332 41 68 chr11 69901947 69902063 -51941793 + Kanga1a DNA Tc2 537 653 -101 1 1118 825 228 0 49 chr11 69902063 69902266 -51941590 + B3A SINE B2 2 194 -4 1 1118 276 332 41 68 chr11 69902266 69902369 -51941487 + Kanga1a DNA Tc2 654 750 -4 1 1118 933 165 30 55 chr11 69902382 69902581 -51941275 - B2_Mm2 SINE B2 -1 194 1 1 1118 689 188 45 8 chr11 69902653 69902787 -51941069 + B1_Mur1 SINE Alu 2 140 -9 1 1118 216 0 0 0 chr11 69902788 69902812 -51941044 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1 1118 254 230 125 11 chr11 69902827 69902915 -51940941 - PB1D7 SINE Alu -5 115 18 1 1118 322 305 182 0 chr11 69902917 69903104 -51940752 - L1MB3 LINE L1 -51 6132 5912 1 1118 540 216 247 0 chr11 69903656 69903818 -51940038 - B3 SINE B2 -11 205 4 1 1118 368 225 86 122 chr11 69904315 69904507 -51939349 - ORR1E LTR MaLR -193 181 1 1 1118 194 281 56 79 chr11 69904513 69904602 -51939254 + MIRb SINE MIR 114 200 -68 1 1118 294 95 0 0 chr11 69904620 69904662 -51939194 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1118 241 276 0 50 chr11 69904699 69904779 -51939077 - B4A SINE B4 0 292 217 1 1118 438 20 0 0 chr11 69904779 69904830 -51939026 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 1 1118 570 296 88 22 chr11 69904831 69905059 -51938797 - B4A SINE B4 -47 245 3 1 1118 433 206 18 43 chr11 69905159 69905271 -51938585 + Lx7 LINE L1 6854 6966 -507 1 1118 518 256 112 46 chr11 69905273 69905514 -51938342 + Lx7 LINE L1 7136 7392 -304 1 1118 210 236 0 0 chr11 69905908 69905963 -51937893 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1118 2592 153 24 7 chr11 69906810 69907224 -51936632 - MTC LTR MaLR 0 421 1 1 1118 262 318 0 0 chr11 69907334 69907397 -51936459 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1118 483 244 73 15 chr11 69907636 69907773 -51936083 - B1F SINE Alu -2 147 3 1 1118 275 284 15 0 chr11 69907937 69908004 -51935852 - ID4_ SINE ID 0 83 16 1 1118 790 244 72 30 chr11 69908198 69908435 -51935421 - L1MEc LINE L1 -6040 360 114 1 1118 706 142 47 12 chr11 69908464 69908635 -51935221 + (TATG)n Simple_repeat Simple_repeat 4 180 0 1 1118 206 309 8 86 chr11 69908739 69908856 -51935000 - MIRb SINE MIR -78 190 83 1 1118 296 302 70 113 chr11 69909034 69909313 -51934543 - MLT1A1 LTR MaLR -14 351 49 1 1118 932 147 8 11 chr11 69911972 69912243 -51931613 + CT-rich Low_complexity Low_complexity 1 269 0 1 1118 394 280 34 45 chr11 69912243 69912419 -51931437 - Lx8 LINE L1 -50 7423 7250 1 1118 755 199 155 0 chr11 69912430 69912591 -51931265 + Lx8 LINE L1 7051 7236 -237 1 1118 9378 81 24 9 chr11 69913928 69915948 -51927908 - Lx3_Mus LINE L1 -47 6962 4925 1 1118 2459 74 9 3 chr11 69915949 69916287 -51927569 + L1_Mur1 LINE L1 3619 3958 -1928 1 1118 646 28 0 0 chr11 69916281 69916353 -51927503 + L1_Mur1 LINE L1 4893 4964 -922 1 1118 354 45 0 0 chr11 69916384 69916428 -51927428 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1118 410 350 25 25 chr11 69916472 69916750 -51927106 - B4A SINE B4 -14 278 1 1 1118 899 208 79 25 chr11 69916913 69917115 -51926741 + B3 SINE B2 4 216 0 1 1118 531 241 224 46 chr11 69917200 69917374 -51926482 - ID_B1 SINE B4 -11 213 9 1 1118 248 344 40 24 chr11 69918600 69918725 -51925131 + MIRb SINE MIR 141 267 -1 1 1118 279 0 0 0 chr11 69918778 69918809 -51925047 + (GGCTG)n Simple_repeat Simple_repeat 5 35 0 1 1118 955 24 16 0 chr11 69919962 69920088 -51923768 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 1118 395 262 45 45 chr11 69920996 69921108 -51922748 - ORR1E LTR MaLR -223 136 25 1 1118 538 301 53 72 chr11 69921112 69921268 -51922588 - RMER15 LTR ERVL -9 566 402 1 1118 209 57 29 0 chr11 69921268 69921303 -51922553 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1118 1204 56 0 0 chr11 69921308 69921451 -51922405 + B1_Mus1 SINE Alu 1 143 -5 1 1118 538 301 53 72 chr11 69921451 69921553 -51922303 - RMER15 LTR ERVL -176 399 307 1 1118 746 247 30 0 chr11 69921549 69921715 -51922141 - B3 SINE B2 -44 172 2 1 1118 31 0 0 0 chr11 69921886 69921917 -51921939 + AT_rich Low_complexity Low_complexity 1 31 0 1 1118 24 42 0 20 chr11 69922030 69922049 -51921807 + AT_rich Low_complexity Low_complexity 1 19 0 1 1118 944 139 14 0 chr11 69922049 69922193 -51921663 - B1_Mus1 SINE Alu 0 148 3 1 1118 24 42 0 20 chr11 69922193 69922222 -51921634 + AT_rich Low_complexity Low_complexity 1 29 0 1 1118 348 389 0 22 chr11 69922249 69922428 -51921428 + Lx8 LINE L1 6675 6849 -624 1 1118 495 365 47 51 chr11 69922478 69922929 -51920927 + Lx8 LINE L1 6964 7414 -59 1 1118 282 116 0 0 chr11 69922929 69922972 -51920884 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1118 495 365 47 51 chr11 69922972 69923031 -51920825 + Lx8 LINE L1 7415 7472 -1 1 1118 829 148 0 8 chr11 69923121 69923250 -51920606 + B1_Mur4 SINE Alu 4 131 -19 1 1118 225 0 0 0 chr11 69923250 69923275 -51920581 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1118 292 300 16 8 chr11 69923363 69923484 -51920372 - L1MD2 LINE L1 -144 6496 6375 1 1118 338 340 113 5 chr11 69923498 69923711 -51920145 - L1MD2 LINE L1 -235 6325 6090 1 1118 961 229 29 5 chr11 69923723 69923929 -51919927 + B3 SINE B2 2 212 -4 1 1118 594 312 6 0 chr11 69923946 69924106 -51919750 - RSINE1 SINE B4 0 165 5 1 1118 297 315 94 75 chr11 69924611 69924824 -51919032 - L1MD2 LINE L1 -722 6035 5819 1 1118 297 68 0 0 chr11 69924847 69924891 -51918965 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1118 264 59 0 0 chr11 69924988 69925022 -51918834 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1118 6110 76 21 12 chr11 69925022 69925848 -51918008 - Lx3A LINE L1 -13 6968 6133 1 1118 236 257 9 0 chr11 69925930 69926043 -51917813 + (TG)n Simple_repeat Simple_repeat 2 115 0 1 1118 619 254 124 40 chr11 69926089 69926315 -51917541 - B4A SINE B4 -18 274 30 1 1118 314 272 43 26 chr11 69926382 69926499 -51917357 - L1MD2 LINE L1 -865 5679 5561 1 1118 414 0 0 0 chr11 69926655 69926701 -51917155 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1118 3238 63 2 2 chr11 69926701 69927098 -51916758 + MTB LTR MaLR 4 400 0 1 1118 439 261 8 42 chr11 69927397 69927517 -51916339 - PB1D7 SINE Alu 0 120 2 1 1118 537 215 141 65 chr11 69928405 69928589 -51915267 + B3A SINE B2 1 198 0 1 1118 1114 209 14 5 chr11 69928754 69928965 -51914891 + B3 SINE B2 2 214 -2 1 1118 26 0 0 0 chr11 69928967 69928993 -51914863 + AT_rich Low_complexity Low_complexity 1 26 0 1 1118 600 281 81 44 chr11 69929152 69929392 -51914464 - L1MD2 LINE L1 -6212 335 79 1 1118 1051 201 182 70 chr11 69929392 69929584 -51914272 + MTD LTR MaLR 4 202 -217 1 1118 819 206 143 0 chr11 69929584 69929773 -51914083 + B3 SINE B2 1 216 0 1 1118 213 39 0 0 chr11 69929781 69929807 -51914049 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 1 1118 1051 201 182 70 chr11 69929807 69929979 -51913877 + MTD LTR MaLR 203 419 0 1 1118 600 281 81 44 chr11 69929979 69930036 -51913820 - L1MD2 LINE L1 -6469 78 27 1 1118 357 265 157 35 chr11 69930146 69930187 -51913669 + L1M5 LINE L1 2802 2850 -3296 1 1118 783 217 122 0 chr11 69930187 69930376 -51913480 + B3 SINE B2 1 212 -4 1 1118 357 265 157 35 chr11 69930376 69930506 -51913350 + L1M5 LINE L1 2851 2993 -3153 1 1118 436 305 58 62 chr11 69930539 69930780 -51913076 - MER2 DNA MER2_type -31 314 75 1 1118 455 184 0 44 chr11 69930787 69930878 -51912978 + B3 SINE B2 40 126 -90 1 1118 277 226 96 11 chr11 69931076 69931170 -51912686 - PB1D7 SINE Alu -18 102 1 1 1118 279 186 68 0 chr11 69931447 69931506 -51912350 + ID4 SINE ID 19 81 -2 1 1118 239 246 108 0 chr11 69931521 69931586 -51912270 + PB1D7 SINE Alu 33 104 -16 1 1118 1157 99 11 32 chr11 69931653 69931840 -51912016 + ORR1B1 LTR MaLR 5 187 -207 1 1118 1888 187 23 44 chr11 69931860 69932246 -51911610 - ORR1C2 LTR MaLR -6 378 1 1 1118 313 221 51 13 chr11 69932863 69932941 -51910915 + L1M4b LINE L1 2220 2300 -5034 1 1118 2735 138 17 2 chr11 69933182 69933597 -51910259 + MTC LTR MaLR 1 421 0 1 1118 605 236 60 65 chr11 69933671 69933968 -51909888 - MTE2a LTR MaLR -3 376 26 1 1118 840 289 53 9 chr11 69933970 69934197 -51909659 + B4 SINE B4 56 292 0 1 1118 1375 298 112 16 chr11 69934235 69934996 -51908860 + L1M4b LINE L1 3069 3902 -3101 1 1118 11074 34 9 24 chr11 69934994 69936395 -51907461 - L1_Mm LINE L1 -1306 4577 3198 1 1118 6031 51 3 0 chr11 69936394 69937135 -51906721 + L1_Mm LINE L1 4571 5313 -570 1 1118 471 29 0 14 chr11 69937135 69937205 -51906651 + L1Md_F3 LINE L1 6506 6574 -10 1 1118 660 129 50 33 chr11 69937212 69937332 -51906524 + B1_Mur2 SINE Alu 28 149 0 1 1118 848 231 86 12 chr11 69937861 69938106 -51905750 - Lx9 LINE L1 0 7644 7382 1 1118 677 224 16 0 chr11 69938225 69938350 -51905506 + ETnERV2-int LTR ERVK 7070 7196 -210 1 1118 2793 48 38 41 chr11 69938591 69938957 -51904899 + RLTR10B2 LTR ERVK 1 365 0 1 1118 786 270 15 48 chr11 69939257 69939529 -51904327 + L1M4b LINE L1 4524 4786 -2217 1 1118 350 258 144 93 chr11 69939550 69939828 -51904028 - RMER10A LTR ERVL -27 415 124 1 1118 397 242 194 0 chr11 69940089 69940254 -51903602 + L1_Mur3 LINE L1 3897 4093 -1787 1 1118 1570 184 12 130 chr11 69940260 69940691 -51903165 - RMER10B LTR ERVL 0 398 19 1 1118 532 322 67 19 chr11 69940696 69941009 -51902847 + L1M4b LINE L1 4991 5318 -1685 1 1118 1977 231 63 55 chr11 69941009 69941631 -51902225 - RLTR18 LTR ERVK -53 563 1 1 1118 238 291 99 33 chr11 69941631 69941752 -51902104 + L1M4b LINE L1 5322 5450 -1553 1 1118 286 271 29 0 chr11 69944305 69944375 -51899481 - B4 SINE B4 -4 288 217 1 1118 206 259 17 17 chr11 69944378 69944437 -51899419 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1118 678 341 64 29 chr11 69944440 69944494 -51899362 - B4A SINE B4 0 292 228 1 1118 423 38 0 0 chr11 69944494 69944547 -51899309 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1118 678 341 64 29 chr11 69944547 69944558 -51899298 - B4A SINE B4 -65 227 217 1 1118 3173 90 28 60 chr11 69944558 69945056 -51898800 + L1Md_F2 LINE L1 6101 6582 0 1 1118 678 341 64 29 chr11 69945056 69945270 -51898586 - B4A SINE B4 -76 216 4 1 1118 414 0 0 0 chr11 69945274 69945320 -51898536 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1118 599 227 37 29 chr11 69945321 69945457 -51898399 - B4 SINE B4 -75 217 81 1 1118 712 237 37 44 chr11 69945471 69945656 -51898200 - B3A SINE B2 0 216 30 1 1118 2915 75 28 0 chr11 69945656 69946045 -51897811 - MTB LTR MaLR 0 400 1 1 1118 712 236 28 33 chr11 69946045 69946077 -51897779 - B3A SINE B2 -169 29 2 1 1118 367 224 13 13 chr11 69946081 69946158 -51897698 - B4 SINE B4 -200 92 16 1 1118 562 316 6 0 chr11 69946691 69946849 -51897007 + RSINE1 SINE B4 3 161 -4 1 1118 231 246 74 96 chr11 69946902 69947037 -51896819 + MER103 DNA DNA 26 157 -9 1 1118 1181 48 7 0 chr11 69947354 69947500 -51896356 - B1_Mus1 SINE Alu 0 148 2 1 1118 397 274 54 84 chr11 69948258 69948461 -51895395 + CYRA11_Mm Unknown Y-chromosome 149 345 -272 1 1118 1218 172 18 27 chr11 69948291 69948512 -51895344 - URR1A DNA MER1_type -7 219 1 1 1118 204 306 78 50 chr11 69948823 69949072 -51894784 + MIR SINE MIR 15 261 -1 1 1118 1804 115 27 66 chr11 69950826 69951161 -51892695 + RLTRETN_Mm LTR ERVK 1 322 0 1 1118 1301 102 21 26 chr11 69951161 69951353 -51892503 + B2_Mm2 SINE B2 2 192 -3 1 1118 985 181 30 0 chr11 69952008 69952174 -51891682 + B3 SINE B2 2 172 -44 1 1118 4617 135 66 43 chr11 69952195 69953131 -51890725 + RMER17B LTR ERVK 1 958 0 1 1118 257 239 113 56 chr11 69953156 69953306 -51890550 - MTEa LTR MaLR -1 418 268 1 1118 252 239 32 102 chr11 69953390 69953487 -51890369 + ID2 SINE ID 4 92 -60 1 1118 859 265 73 97 chr11 69953492 69953836 -51890020 + L1M2 LINE L1 4239 4612 -1531 1 1118 771 241 0 7 chr11 69953836 69953982 -51889874 + RSINE1 SINE B4 2 146 -19 1 1118 859 265 73 97 chr11 69953982 69954113 -51889743 + L1M2 LINE L1 4613 4703 -1440 1 1118 216 138 30 0 chr11 69954120 69954162 -51889694 + B1_Mus1 SINE Alu 6 52 -96 1 1118 673 284 87 11 chr11 69954174 69954540 -51889316 + L1M2 LINE L1 2840 3233 -2910 1 1118 2422 207 62 34 chr11 69954542 69955073 -51888783 - Lx9 LINE L1 -612 7032 6487 1 1118 909 236 9 59 chr11 69955072 69955293 -51888563 + Lx9 LINE L1 7003 7212 -432 1 1118 954 238 143 26 chr11 69955957 69956341 -51887515 + Lx9 LINE L1 7216 7644 0 1 1118 791 200 27 7 chr11 69956398 69956544 -51887312 + B3A SINE B2 9 157 -41 1 1118 189 0 0 0 chr11 69956552 69956573 -51887283 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1118 477 0 0 0 chr11 69956573 69956625 -51887231 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1118 513 331 6 30 chr11 69956662 69956827 -51887029 + Lx8 LINE L1 7181 7341 -132 1 1118 1687 196 43 104 chr11 69956977 69957171 -51886685 + MTD LTR MaLR 22 199 -220 1 1118 654 216 64 14 chr11 69957171 69957312 -51886544 + B1_Mur2 SINE Alu 1 148 -1 1 1118 1687 196 43 104 chr11 69957312 69957539 -51886317 + MTD LTR MaLR 200 417 -2 1 1118 422 309 50 78 chr11 69957662 69957841 -51886015 - MTEa LTR MaLR -205 174 1 1 1118 999 290 60 64 chr11 69957847 69958219 -51885637 + L1_Rod LINE L1 4831 5218 -629 1 1118 1282 27 0 0 chr11 69958219 69958365 -51885491 + B1_Mus2 SINE Alu 2 147 0 1 1118 999 236 196 19 chr11 69958365 69958597 -51885259 + L1_Rod LINE L1 5219 5518 -779 1 1118 1996 118 52 0 chr11 69958619 69958924 -51884932 + ORR1A4 LTR MaLR 1 321 -8 1 1118 429 314 57 13 chr11 69958928 69959157 -51884699 + L1_Rod LINE L1 5541 5779 -512 1 1118 1117 151 99 0 chr11 69959535 69959727 -51884129 - B3 SINE B2 -5 211 1 1 1118 390 316 139 22 chr11 69959729 69959934 -51883922 - L1M4 LINE L1 -3105 3041 2783 1 1118 2257 174 94 8 chr11 69959934 69960425 -51883431 - MT2A LTR ERVL 0 533 1 1 1118 390 297 113 14 chr11 69960425 69960769 -51883087 - L1M4 LINE L1 -3364 2782 2429 1 1118 492 277 45 30 chr11 69960825 69960959 -51882897 - RSINE1 SINE B4 -1 164 29 1 1118 207 0 0 0 chr11 69960976 69960999 -51882857 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1118 287 272 161 0 chr11 69961028 69961245 -51882611 - L1MD LINE L1 -3723 2423 2172 1 1118 291 161 0 0 chr11 69961285 69961341 -51882515 + CT-rich Low_complexity Low_complexity 2 57 0 1 1118 794 131 151 36 chr11 69961358 69961524 -51882332 - B2_Mm2 SINE B2 -5 190 6 1 1118 384 225 50 55 chr11 69961809 69962006 -51881850 - Lx9 LINE L1 -18 7626 7349 1 1118 266 269 26 0 chr11 69962017 69962095 -51881761 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 1 1118 1154 271 64 40 chr11 69962095 69962552 -51881304 - Lx9 LINE L1 -130 7514 6904 1 1118 1694 193 77 14 chr11 69962722 69963074 -51880782 - L1_Rod LINE L1 -1 5846 5473 1 1118 435 326 0 14 chr11 69963134 69963280 -51880576 + RSINE1 SINE B4 3 146 -19 1 1118 330 26 0 0 chr11 69963285 69963324 -51880532 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1118 783 157 104 0 chr11 69964038 69964172 -51879684 + B1_Mur1 SINE Alu 2 149 0 1 1118 1258 81 0 0 chr11 69964329 69964489 -51879367 + B2_Mm2 SINE B2 2 161 -34 1 1118 272 27 27 0 chr11 69964489 69964526 -51879330 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1 1118 792 136 364 0 chr11 69964530 69964684 -51879172 + B3 SINE B2 1 210 -6 1 1118 555 250 84 62 chr11 69964691 69964854 -51879002 - B3 SINE B2 0 216 50 1 1118 2876 137 52 16 chr11 69964854 69965357 -51878499 + RLTR28 LTR ERVL 3 523 -1 1 1118 476 222 49 133 chr11 69965502 69965554 -51878302 - B2_Mm2 SINE B2 -8 187 141 1 1118 405 0 0 0 chr11 69965554 69965599 -51878257 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1118 631 222 49 133 chr11 69965599 69965749 -51878107 - B3A SINE B2 -55 140 2 1 1118 21 0 0 0 chr11 69966313 69966334 -51877522 + AT_rich Low_complexity Low_complexity 1 21 0 1 1118 464 306 194 11 chr11 69966912 69967190 -51876666 + L1M4 LINE L1 566 894 -5648 1 1118 1541 63 19 0 chr11 69967190 69967395 -51876461 - MurERV4_19-int LTR ERVK -2294 3486 3278 1 1118 1340 74 28 0 chr11 69967397 69967573 -51876283 + B2_Mm2 SINE B2 2 182 -13 1 1118 386 101 0 21 chr11 69967657 69967723 -51876133 + B2_Mm2 SINE B2 47 109 -107 1 1118 396 0 0 0 chr11 69967729 69967773 -51876083 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 1118 1815 91 26 19 chr11 69967795 69968064 -51875792 - MurERV4_19-int LTR ERVK -2490 3290 3020 1 1118 473 79 16 0 chr11 69968062 69968125 -51875731 + MurERV4_19-int LTR ERVK 2675 2738 -3042 1 1118 8579 93 22 12 chr11 69968130 69969337 -51874519 - MurERV4_19-int LTR ERVK -2761 3019 1801 1 1118 4369 14 2 26 chr11 69969337 69969842 -51874014 + MT2_Mm LTR ERVL 1 493 0 1 1118 48245 17 7 0 chr11 69969842 69975165 -51868691 + MERVL-int LTR ERVL 1 5360 -125 1 1118 403 167 46 35 chr11 69975165 69975252 -51868604 + ORR1A3-int LTR MaLR 553 640 -1323 1 1118 319 0 0 0 chr11 69975252 69975290 -51868566 + MERVL-int LTR ERVL 5448 5485 0 1 1118 4369 14 2 26 chr11 69975290 69975795 -51868061 + MT2_Mm LTR ERVL 1 493 0 1 1118 4306 126 13 5 chr11 69975795 69976424 -51867432 - MurERV4_19-int LTR ERVK -3975 1805 1172 1 1118 2205 159 113 14 chr11 69976429 69977215 -51866641 - MurERV4_19-int LTR ERVK -4907 873 10 1 1118 1665 98 0 13 chr11 69977214 69977451 -51866405 - MurERV4_19-int LTR ERVK -771 5009 4776 1 1118 733 219 0 14 chr11 69977870 69978018 -51865838 + B1_Mus2 SINE Alu 1 146 -1 1 1118 203 146 24 0 chr11 69980894 69980935 -51862921 + CT-rich Low_complexity Low_complexity 4 45 0 1 1118 385 129 32 0 chr11 69980960 69981022 -51862834 - BC1_Mm scRNA scRNA -78 74 11 1 1118 955 224 23 32 chr11 69981053 69981270 -51862586 - B3 SINE B2 0 216 2 1 1118 221 312 57 48 chr11 69982347 69982556 -51861300 + MIRc SINE MIR 15 225 -43 1 1118 563 208 97 32 chr11 69984585 69984709 -51859147 + B1F1 SINE Alu 18 149 0 1 1118 549 262 0 0 chr11 69984818 69984940 -51858916 + RSINE1 SINE B4 3 124 -41 1 1118 348 43 0 0 chr11 69984940 69984986 -51858870 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1118 600 214 137 0 chr11 69985091 69985222 -51858634 - B1_Mur1 SINE Alu 0 149 1 1 1118 401 247 176 18 chr11 69985243 69985408 -51858448 - B3 SINE B2 -25 191 1 1 1118 725 254 51 0 chr11 69985493 69985670 -51858186 - B3 SINE B2 -30 186 1 1 1118 207 0 0 0 chr11 69985673 69985696 -51858160 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1118 350 243 15 54 chr11 69985704 69985852 -51858004 - L1_Mur3 LINE L1 -1736 4407 4225 1 1118 1055 204 23 23 chr11 69985865 69986081 -51857775 + B3 SINE B2 1 216 0 1 1118 31 0 0 0 chr11 69986081 69986112 -51857744 + AT_rich Low_complexity Low_complexity 1 31 0 1 1118 967 270 29 41 chr11 69986752 69987092 -51856764 - Lx7 LINE L1 -1772 5924 5589 1 1118 4167 103 76 3 chr11 69987289 69987921 -51855935 + RLTR33 LTR ERVK 1 678 0 1 1118 2162 172 48 8 chr11 69987975 69988367 -51855489 - MTD LTR MaLR 0 419 12 1 1118 228 170 0 0 chr11 69988451 69988504 -51855352 + T-rich Low_complexity Low_complexity 1 53 0 1 1118 527 171 8 0 chr11 69988524 69988653 -51855203 + CT-rich Low_complexity Low_complexity 2 131 0 1 1118 923 271 38 0 chr11 69988679 69988915 -51854941 - L1M2 LINE L1 -1209 4934 4690 1 1118 263 267 17 0 chr11 69989343 69989403 -51854453 - MTEb LTR MaLR -25 354 294 1 1118 1546 130 225 23 chr11 69989404 69989569 -51854287 + ORR1D1 LTR MaLR 1 163 -211 1 1118 387 0 0 0 chr11 69989569 69989612 -51854244 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1118 1546 130 225 23 chr11 69989612 69989753 -51854103 + ORR1D1 LTR MaLR 164 368 -6 1 1118 333 0 0 0 chr11 69989753 69989790 -51854066 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1118 1099 182 15 5 chr11 69991261 69991460 -51852396 + B3 SINE B2 5 205 -11 1 1118 267 74 72 14 chr11 69991652 69991721 -51852135 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 139 611 351 28 45 chr11 69992411 69992677 -51851179 + B4A SINE B4 8 270 -22 1 1119 249 108 0 0 chr11 69992677 69992714 -51851142 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1119 611 351 28 45 chr11 69992714 69992736 -51851120 + B4A SINE B4 271 291 -1 1 1119 270 258 11 33 chr11 69992888 69992980 -51850876 + L1M7 LINE L1 1183 1272 -4946 1 1119 427 280 46 56 chr11 69993354 69993489 -51850367 + L1MC LINE L1 3033 3170 -2976 1 1119 1022 176 69 0 chr11 69993489 69993677 -51850179 + B3 SINE B2 2 202 -14 1 1119 321 26 0 0 chr11 69993677 69993715 -51850141 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1 1119 427 280 46 56 chr11 69993715 69993775 -51850081 + L1MC LINE L1 3171 3226 -2920 1 1119 351 244 87 100 chr11 69993779 69993929 -51849927 + MT2B2 LTR ERVL 125 272 -312 1 1119 408 301 13 65 chr11 69993800 69993819 -51850037 + B4A SINE B4 78 215 -77 1 1119 830 148 14 22 chr11 69993819 69993833 -51850023 + B1_Mur4 SINE Alu 13 138 -12 1 1119 233 264 57 108 chr11 69993833 69993943 -51849913 - YREP_Mm Unknown Unknown -1521 291 189 1 1119 306 0 0 0 chr11 69993943 69993977 -51849879 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1119 233 264 57 108 chr11 69993990 69994023 -51849833 - YREP_Mm Unknown Unknown -1624 188 143 1 1119 390 285 16 27 chr11 69994039 69994223 -51849633 + L1M4 LINE L1 3342 3523 -2623 1 1119 225 0 0 0 chr11 69994233 69994258 -51849598 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1119 261 0 0 0 chr11 69994642 69994671 -51849185 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1119 681 247 28 22 chr11 69994761 69994943 -51848913 - B3A SINE B2 -12 186 4 1 1119 323 218 56 26 chr11 69995147 69995291 -51848565 + MTC LTR MaLR 215 400 -21 1 1119 263 203 30 45 chr11 69995296 69995363 -51848493 + L1M4 LINE L1 890 955 -5587 1 1119 1945 244 42 16 chr11 69995700 69996203 -51847653 - RMER20A LTR ERVK 0 516 1 1 1119 239 317 28 56 chr11 69996546 69996653 -51847203 + MER5B DNA MER1_type 72 175 -3 1 1119 303 216 182 53 chr11 69998189 69998321 -51845535 - L1MA6 LINE L1 -338 5962 5814 1 1119 1282 40 0 0 chr11 69998330 69998478 -51845378 - B1_Mus1 SINE Alu 0 148 1 1 1119 402 127 0 0 chr11 69998495 69998566 -51845290 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1119 606 271 11 62 chr11 69998572 69998749 -51845107 - B3A SINE B2 -16 182 15 1 1119 291 212 147 87 chr11 69998749 69998899 -51844957 - L1MA6 LINE L1 -646 5654 5496 1 1119 324 0 0 0 chr11 69999045 69999081 -51844775 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1119 297 0 0 0 chr11 69999081 69999113 -51844743 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1119 303 194 46 19 chr11 70000610 70000689 -51843167 - B1_Mur2 SINE Alu 0 149 73 1 1119 324 320 62 0 chr11 70000692 70000820 -51843036 - L1MCa LINE L1 -4549 2875 2740 2 1119 636 239 21 14 chr11 70000827 70000967 -51842889 + B3A SINE B2 3 143 -55 3 1119 360 0 0 0 chr11 70000973 70001013 -51842843 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1119 283 349 0 0 chr11 70001013 70001096 -51842760 + B4A SINE B4 3 85 -207 5 1119 939 91 0 0 chr11 70001180 70001312 -51842544 + B1_Mur4 SINE Alu 16 147 -3 6 1119 531 258 80 66 chr11 70001502 70001543 -51842313 - RLTR25A LTR ERVK -429 674 580 7 1119 546 132 16 131 chr11 70001543 70001665 -51842191 - MT2B LTR ERVL -314 287 180 8 1119 531 258 80 66 chr11 70001665 70001714 -51842142 - RLTR25A LTR ERVK -429 579 460 7 1119 1453 167 18 7 chr11 70001667 70001939 -51841917 - ORR1A2-int LTR MaLR -1403 560 286 9 1119 744 81 3 0 chr11 70001959 70002077 -51841779 - B1_Mm SINE Alu 0 120 1 1 1119 1758 122 13 48 chr11 70002077 70002388 -51841468 - ORR1A2-int LTR MaLR -1663 300 1 9 1119 2259 99 12 3 chr11 70002388 70002712 -51841144 - ORR1A2 LTR MaLR 0 327 1 9 1119 624 27 0 0 chr11 70003895 70003969 -51839887 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 1 1119 1054 80 0 0 chr11 70003971 70004109 -51839747 - B1_Mus2 SINE Alu -5 142 5 1 1119 708 228 133 0 chr11 70004345 70004525 -51839331 - B3 SINE B2 -5 211 8 1 1119 823 163 13 20 chr11 70004575 70004725 -51839131 + B1_Mur2 SINE Alu 1 149 0 1 1119 182 37 37 0 chr11 70005179 70005206 -51838650 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1119 259 58 0 71 chr11 70005207 70005263 -51838593 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 1 1119 228 220 16 48 chr11 70005314 70005376 -51838480 - L1MCa LINE L1 -5521 714 655 2 1119 228 67 0 0 chr11 70005508 70005538 -51838318 + (CTG)n Simple_repeat Simple_repeat 1 30 0 1 1119 651 184 43 14 chr11 70005538 70005676 -51838180 - B1_Mur1 SINE Alu -6 143 2 1 1119 261 0 0 0 chr11 70005897 70005926 -51837930 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1119 216 0 0 0 chr11 70006132 70006156 -51837700 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1119 875 208 43 24 chr11 70006420 70006627 -51837229 - B3 SINE B2 -5 211 1 2 1119 320 244 64 0 chr11 70007136 70007214 -51836642 + PB1D9 SINE Alu 3 85 -35 2 1119 219 36 0 0 chr11 70007323 70007351 -51836505 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 2 1119 282 339 129 42 chr11 70007584 70007824 -51836032 + MLT1L LTR MaLR 260 520 -90 2 1119 311 67 0 22 chr11 70007825 70007871 -51835985 - HAL1-3A_ME LINE L1 -839 2019 1975 2 1119 329 115 40 30 chr11 70007871 70007970 -51835886 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 1119 585 277 114 73 chr11 70007984 70008257 -51835599 - B4A SINE B4 -8 284 1 2 1119 598 351 61 18 chr11 70008281 70008626 -51835230 + MLT1A LTR MaLR 1 374 0 2 1119 180 111 0 0 chr11 70008647 70008674 -51835182 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1119 686 183 41 27 chr11 70008693 70008839 -51835017 - B1_Mur3 SINE Alu -1 148 1 3 1119 216 0 0 0 chr11 70008856 70008880 -51834976 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1119 596 238 83 7 chr11 70008888 70009032 -51834824 - B3A SINE B2 -42 156 2 3 1119 572 259 86 51 chr11 70009580 70009755 -51834101 + ID_B1 SINE B4 2 182 -42 3 1119 2004 141 36 139 chr11 70009794 70010296 -51833560 + RLTR28 LTR ERVL 75 524 0 3 1119 828 302 171 0 chr11 70010666 70010971 -51832885 - MLT1A0 LTR MaLR -6 359 3 3 1119 1219 88 55 0 chr11 70011244 70011426 -51832430 - B2_Mm2 SINE B2 -2 193 2 3 1119 375 208 182 53 chr11 70011445 70011477 -51832379 - B1_Mur1 SINE Alu 0 149 118 3 1119 288 0 0 0 chr11 70011477 70011509 -51832347 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1119 375 208 182 53 chr11 70011509 70011608 -51832248 - B1_Mur1 SINE Alu -32 117 1 3 1119 248 160 0 57 chr11 70011563 70011616 -51832240 - B4 SINE B4 -164 128 79 3 1119 375 297 135 101 chr11 70011767 70011824 -51832032 - ORSL-2b DNA Tip100 -126 382 324 4 1119 4334 104 59 12 chr11 70011824 70012506 -51831350 + RLTR19B LTR ERVK 1 714 -1 4 1119 375 297 135 101 chr11 70012506 70012766 -51831090 - ORSL-2b DNA Tip100 -185 323 54 4 1119 393 333 8 8 chr11 70012844 70012962 -51830894 + PB1 SINE Alu 1 118 -9 4 1119 213 208 26 13 chr11 70012964 70013042 -51830814 + GA-rich Low_complexity Low_complexity 3 81 0 4 1119 194 0 39 0 chr11 70013418 70013444 -51830412 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1119 425 225 66 5 chr11 70014598 70014711 -51829145 - PB1D10 SINE Alu -21 126 7 4 1119 919 170 0 0 chr11 70014749 70014896 -51828960 - B1_Mur3 SINE Alu -2 147 1 4 1119 348 336 9 18 chr11 70014922 70015031 -51828825 - PB1 SINE Alu -5 122 15 4 1119 571 213 68 8 chr11 70015449 70015615 -51828241 - B3A SINE B2 -1 215 40 4 1119 381 189 0 0 chr11 70015964 70016054 -51827802 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1119 433 286 26 91 chr11 70016121 70016142 -51827714 - B4 SINE B4 -46 246 190 5 1119 896 135 0 7 chr11 70016142 70016284 -51827572 - B1_Mur3 SINE Alu -2 147 7 5 1119 433 286 26 91 chr11 70016284 70016334 -51827522 - B4 SINE B4 -46 189 45 5 1119 577 257 28 0 chr11 70017194 70017338 -51826518 + B1F SINE Alu 1 148 -1 5 1119 1149 181 18 9 chr11 70017355 70017578 -51826278 + URR1B DNA MER1_type 1 225 0 5 1119 275 367 61 30 chr11 70018114 70018378 -51825478 + L2b LINE L2 3042 3313 -62 5 1119 429 90 0 0 chr11 70018412 70018479 -51825377 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1119 225 0 0 0 chr11 70018479 70018503 -51825353 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1119 311 285 145 8 chr11 70018539 70018663 -51825193 - RMER15 LTR ERVL -14 561 421 5 1119 2071 305 56 48 chr11 70018787 70019659 -51824197 - Lx8 LINE L1 -299 7174 6296 5 1119 353 293 86 24 chr11 70019755 70019965 -51823891 - RMER15-int LTR ERVL -2444 2555 2333 5 1119 2442 327 94 32 chr11 70019997 70021162 -51822694 - RMER15-int LTR ERVL -2785 2214 978 5 1119 283 143 0 0 chr11 70021186 70021228 -51822628 - RMER15-int LTR ERVL -4105 894 853 5 1119 579 287 64 76 chr11 70021277 70021541 -51822315 - RMER15-int LTR ERVL -4261 738 478 5 1119 504 202 155 0 chr11 70021558 70021687 -51822169 - RSINE1 SINE B4 -5 160 12 5 1119 732 347 56 58 chr11 70021698 70022181 -51821675 - RMER15-int LTR ERVL -4516 483 2 5 1119 273 250 41 200 chr11 70022270 70022325 -51821531 + ID_B1 SINE B4 82 179 -45 6 1119 468 193 0 43 chr11 70022325 70022417 -51821439 + B1_Mur1 SINE Alu 52 139 -10 6 1119 273 250 41 200 chr11 70022417 70022440 -51821416 + ID_B1 SINE B4 180 224 0 6 1119 249 217 133 0 chr11 70022453 70022513 -51821343 - RMER15 LTR ERVL -88 487 420 6 1119 576 247 69 50 chr11 70022731 70022991 -51820865 + RLTR10A LTR ERVK 147 411 0 6 1119 244 264 144 9 chr11 70023050 70023161 -51820695 - Lx8 LINE L1 -298 7175 7050 6 1119 431 253 43 29 chr11 70023161 70023284 -51820572 - B1F1 SINE Alu -14 135 9 6 1119 256 269 13 13 chr11 70023512 70023591 -51820265 + ID4_ SINE ID 3 81 -2 6 1119 6970 209 53 48 chr11 70023597 70025041 -51818815 + MERVL_2A-int LTR ERVL 2368 3869 -1892 6 1119 1197 21 14 0 chr11 70025041 70025186 -51818670 + B1_Mus2 SINE Alu 1 147 0 6 1119 6970 209 53 48 chr11 70025186 70025312 -51818544 + MERVL_2A-int LTR ERVL 3870 3947 -1814 6 1119 379 184 149 0 chr11 70025322 70025409 -51818447 + ID_B1 SINE B4 103 202 -22 6 1119 361 194 26 104 chr11 70025736 70025851 -51818005 - MIR SINE MIR -37 225 120 7 1119 305 231 86 21 chr11 70027048 70027141 -51816715 + MIR SINE MIR 120 218 -44 7 1119 264 271 53 53 chr11 70030184 70030297 -51813559 - B3A SINE B2 -77 121 9 7 1119 484 251 139 6 chr11 70030303 70030475 -51813381 - B3A SINE B2 -3 195 1 7 1119 278 309 62 0 chr11 70030541 70030638 -51813218 + PB1D10 SINE Alu 3 105 -12 7 1119 229 316 26 13 chr11 70031950 70032027 -51811829 + MER91B DNA Tip100 2 79 -111 7 1119 417 308 32 37 chr11 70032926 70033061 -51810795 + MIRb SINE MIR 36 166 -102 7 1119 900 198 38 84 chr11 70033061 70033298 -51810558 - URR1A DNA MER1_type 0 226 1 7 1119 417 308 32 37 chr11 70033298 70033351 -51810505 + MIRb SINE MIR 167 223 -45 7 1119 283 198 146 12 chr11 70034962 70035044 -51808812 + PB1D10 SINE Alu 15 107 -10 7 1119 186 71 0 0 chr11 70035044 70035072 -51808784 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1119 673 183 163 17 chr11 70035671 70035849 -51808007 + B3 SINE B2 1 204 -12 8 1119 303 330 50 8 chr11 70035853 70035972 -51807884 + B1F SINE Alu 20 143 -6 8 1119 280 296 143 0 chr11 70035975 70036073 -51807783 + PB1D10 SINE Alu 5 116 -1 8 1119 343 295 48 0 chr11 70036110 70036215 -51807641 + RSINE1 SINE B4 48 157 -8 8 1119 1141 68 0 0 chr11 70036257 70036403 -51807453 + B1_Mus2 SINE Alu 2 147 0 8 1119 215 315 126 0 chr11 70036686 70036797 -51807059 + MIRb SINE MIR 99 223 -45 8 1119 315 281 22 0 chr11 70040902 70040991 -51802865 - MER5B DNA MER1_type 0 178 88 8 1119 198 0 0 0 chr11 70046208 70046230 -51797626 + (GGGGA)n Simple_repeat Simple_repeat 1 22 0 8 1119 378 0 0 0 chr11 70048350 70048392 -51795464 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1119 280 326 87 40 chr11 70052031 70052239 -51791617 - MIR SINE MIR -31 237 24 8 1119 23 54 0 0 chr11 70053353 70053390 -51790466 + GC_rich Low_complexity Low_complexity 1 37 0 9 1119 1504 203 55 8 chr11 70054123 70054490 -51789366 - ORR1C2 LTR MaLR 0 384 1 9 1119 1006 103 7 0 chr11 70055244 70055390 -51788466 - B1_Mus2 SINE Alu 0 147 1 9 1119 763 129 54 54 chr11 70055396 70055543 -51788313 - B1_Mus2 SINE Alu 0 147 1 9 1119 387 183 211 0 chr11 70055545 70055649 -51788207 + MER58B DNA MER1_type 78 203 -138 9 1119 222 35 0 0 chr11 70056600 70056611 -51787245 + (T)n Simple_repeat Simple_repeat 1 11 0 9 1119 1168 68 0 13 chr11 70056611 70056760 -51787096 - B1_Mus2 SINE Alu 0 147 1 9 1119 222 35 0 0 chr11 70056760 70056777 -51787079 + (T)n Simple_repeat Simple_repeat 1 17 0 9 1119 215 372 23 11 chr11 70056871 70056958 -51786898 + MIR SINE MIR 50 137 -125 9 1119 365 220 219 8 chr11 70056963 70057082 -51786774 + B1F SINE Alu 6 149 0 9 1119 1282 68 68 6 chr11 70057103 70057280 -51786576 + B2_Mm2 SINE B2 1 188 -7 1 1119 324 149 0 0 chr11 70057430 70057477 -51786379 + PB1D10 SINE Alu 18 64 -53 1 1119 184 368 45 53 chr11 70057518 70057650 -51786206 - MIRm SINE MIR -107 169 39 1 1119 407 254 141 57 chr11 70057794 70058100 -51785756 + MLT1A LTR MaLR 4 408 0 1 1119 2054 138 22 0 chr11 70058362 70058682 -51785174 + ORR1A2 LTR MaLR 1 327 0 1 1119 183 152 0 0 chr11 70059813 70059859 -51783997 + T-rich Low_complexity Low_complexity 1 46 0 1 1119 1065 71 42 21 chr11 70059862 70060006 -51783850 - B1_Mm SINE Alu 0 147 1 1 1119 1289 57 114 0 chr11 70060108 70060283 -51783573 - B2_Mm2 SINE B2 0 195 1 1 1119 885 175 0 0 chr11 70061555 70061726 -51782130 + CT-rich Low_complexity Low_complexity 3 173 0 1 1119 816 209 101 29 chr11 70062060 70062267 -51781589 + ID_B1 SINE B4 3 224 0 1 1119 280 241 124 83 chr11 70062367 70062512 -51781344 + LTR89 LTR ERVL? 537 687 -192 1 1119 363 213 73 203 chr11 70062888 70062954 -51780902 - RSINE1 SINE B4 -1 164 88 1 1119 315 0 0 0 chr11 70062954 70062989 -51780867 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1119 473 213 72 198 chr11 70062989 70063102 -51780754 - B4A SINE B4 -188 104 7 1 1119 467 229 0 30 chr11 70063400 70063499 -51780357 + B4A SINE B4 124 219 -73 1 1119 199 307 117 19 chr11 70063782 70063885 -51779971 - L2b LINE L2 -21 3354 3242 1 1119 783 173 14 21 chr11 70064059 70064201 -51779655 + B1_Mur1 SINE Alu 9 149 0 1 1119 365 333 31 16 chr11 70064324 70064452 -51779404 + MER5A DNA MER1_type 3 132 -57 1 1119 273 222 19 0 chr11 70064471 70064525 -51779331 - ID4 SINE ID -24 59 5 1 1119 276 258 0 15 chr11 70064527 70064594 -51779262 + MER5A DNA MER1_type 124 189 0 1 1119 534 213 92 42 chr11 70064627 70064769 -51779087 - B1F SINE Alu 0 149 1 1 1119 447 106 0 0 chr11 70069365 70069431 -51774425 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1 1119 1361 73 23 0 chr11 70069439 70069616 -51774240 - B2_Mm2 SINE B2 -14 181 1 1 1119 297 0 0 0 chr11 70070384 70070417 -51773439 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1119 297 0 0 0 chr11 70070419 70070452 -51773404 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1119 187 31 0 59 chr11 70070670 70070693 -51773163 + (TTTTTG)n Simple_repeat Simple_repeat 6 27 0 1 1119 1238 48 7 0 chr11 70070693 70070840 -51773016 - B1_Mus1 SINE Alu 0 148 1 1 1119 187 31 0 59 chr11 70070840 70070850 -51773006 + (TTTTTG)n Simple_repeat Simple_repeat 2 11 0 1 1119 322 198 8 172 chr11 70071049 70071071 -51772785 - B1_Mur2 SINE Alu -6 143 124 1 1119 540 0 0 0 chr11 70071071 70071131 -51772725 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1119 334 145 13 110 chr11 70071131 70071230 -51772626 - B1_Mur1 SINE Alu -26 123 42 1 1119 389 164 0 0 chr11 70071233 70071294 -51772562 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 1 1119 314 136 0 106 chr11 70071294 70071360 -51772496 - PB1D9 SINE Alu -61 59 1 1 1119 285 98 0 0 chr11 70072590 70072631 -51771225 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1119 437 255 51 0 chr11 70072660 70072758 -51771098 + PB1D9 SINE Alu 13 115 -5 1 1119 397 209 0 0 chr11 70072852 70072919 -51770937 - B4A SINE B4 -5 287 221 1 1119 500 234 45 45 chr11 70072979 70073176 -51770680 - MTD LTR MaLR 0 419 102 1 1119 564 164 0 28 chr11 70073169 70073276 -51770580 + B1_Mur4 SINE Alu 47 150 0 1 1119 426 39 0 0 chr11 70073280 70073332 -51770524 + (GAGAA)n Simple_repeat Simple_repeat 2 53 0 1 1119 410 241 25 17 chr11 70073334 70073452 -51770404 - MTD LTR MaLR -299 120 2 1 1119 898 143 45 0 chr11 70073607 70073740 -51770116 + B1_Mur4 SINE Alu 3 141 -9 1 1119 1032 77 21 7 chr11 70073836 70073980 -51769876 - B2_Mm2 SINE B2 -7 188 43 1 1119 1492 147 0 0 chr11 70074026 70074251 -51769605 - URR1B DNA MER1_type 0 225 1 1 1119 233 264 125 52 chr11 70074358 70074494 -51769362 + MER106A DNA MER1_type 91 236 0 1 1119 378 0 0 0 chr11 70074710 70074752 -51769104 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1119 281 64 43 0 chr11 70074752 70074798 -51769058 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1119 3736 137 143 96 chr11 70074800 70074977 -51768879 + RLTR25B LTR ERVK 141 321 -707 1 1119 531 82 0 0 chr11 70074977 70075050 -51768806 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1119 3736 137 143 96 chr11 70075050 70075720 -51768136 + RLTR25B LTR ERVK 322 1027 -1 1 1119 23 0 0 0 chr11 70075881 70075904 -51767952 + AT_rich Low_complexity Low_complexity 1 23 0 1 1119 228 329 60 12 chr11 70075980 70076063 -51767793 - FordPrefect DNA Tip100 -1 1682 1596 1 1119 854 256 4 98 chr11 70076018 70076085 -51767771 - B3 SINE B2 -2 214 155 1 1119 443 18 0 18 chr11 70076085 70076142 -51767714 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1119 854 256 4 98 chr11 70076142 70076308 -51767548 - B3 SINE B2 -62 154 3 1 1119 257 212 172 23 chr11 70076914 70077001 -51766855 - HAL1 LINE L1 -1636 871 772 1 1119 1144 186 20 0 chr11 70077309 70077508 -51766348 - B3 SINE B2 -6 210 8 1 1119 316 258 92 53 chr11 70077517 70077648 -51766208 - HAL1 LINE L1 -2284 223 88 1 1119 200 231 0 0 chr11 70077729 70077768 -51766088 + CT-rich Low_complexity Low_complexity 4 42 0 1 1119 334 305 65 48 chr11 70077772 70077896 -51765960 - PB1D7 SINE Alu -20 127 2 1 1119 1015 241 85 6 chr11 70078230 70078548 -51765308 - Lx9 LINE L1 0 7644 7302 1 1119 486 0 0 0 chr11 70078655 70078709 -51765147 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1119 531 199 145 19 chr11 70079141 70079300 -51764556 - B3A SINE B2 -18 180 2 1 1119 514 156 11 32 chr11 70079620 70079713 -51764143 - B1_Mur2 SINE Alu -2 147 57 1 1119 24 0 0 0 chr11 70079768 70079792 -51764064 + AT_rich Low_complexity Low_complexity 1 24 0 1 1119 267 286 89 64 chr11 70080026 70080183 -51763673 + MLT1K LTR MaLR 221 381 -214 1 1119 828 100 0 0 chr11 70080193 70080313 -51763543 + (GGA)n Simple_repeat Simple_repeat 1 120 0 1 1119 328 304 92 43 chr11 70080427 70080568 -51763288 + MLT1K LTR MaLR 382 529 -66 1 1119 462 143 179 0 chr11 70080681 70080765 -51763091 + B1_Mur1 SINE Alu 34 132 -17 1 1119 261 0 0 0 chr11 70080765 70080794 -51763062 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 1 1119 261 266 116 45 chr11 70080989 70081262 -51762594 - L1MDa LINE L1 -4110 2992 2697 1 1119 1323 80 0 61 chr11 70081262 70081476 -51762380 - L1Md_F3 LINE L1 0 6584 6384 1 1119 261 266 116 45 chr11 70081476 70081513 -51762343 - L1MDa LINE L1 -4406 2696 2660 1 1119 410 285 48 96 chr11 70081523 70081750 -51762106 - L1MDa LINE L1 -4905 2197 1924 1 1119 249 98 0 0 chr11 70081750 70081791 -51762065 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 1119 399 291 75 121 chr11 70081791 70081844 -51762012 - L1MDa LINE L1 -5411 1923 1868 1 1119 410 298 88 51 chr11 70082080 70082296 -51761560 - L1MDa LINE L1 -6069 1033 810 1 1119 419 259 215 12 chr11 70082320 70082556 -51761300 - Lx8 LINE L1 0 7473 7190 1 1119 292 282 0 0 chr11 70082561 70082632 -51761224 + RLTR24 LTR ERV1 5 75 -454 1 1119 1575 36 5 20 chr11 70082866 70083062 -51760794 + B2_Mm1a SINE B2 1 193 0 1 1119 1651 298 46 8 chr11 70083176 70083701 -51760155 - Lx8 LINE L1 -322 7151 6607 1 1119 250 214 18 0 chr11 70083703 70083759 -51760097 + L1MDa LINE L1 304 360 -6273 1 1119 2383 81 12 58 chr11 70083925 70084268 -51759588 - ORR1A2 LTR MaLR 0 327 1 1 1119 536 261 52 0 chr11 70084303 70084437 -51759419 - ID_B1 SINE B4 -3 221 81 1 1119 185 65 0 31 chr11 70084552 70084584 -51759272 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 1119 771 175 8 8 chr11 70084592 70084719 -51759137 - B1_Mur1 SINE Alu -21 128 2 1 1119 1307 88 27 5 chr11 70084720 70084904 -51758952 - B2_Mm2 SINE B2 -6 189 2 1 1119 455 187 66 0 chr11 70084935 70085026 -51758830 - B3 SINE B2 -6 210 114 1 1119 334 218 43 65 chr11 70085018 70085111 -51758745 - B1F SINE Alu -18 131 41 1 1119 1081 256 112 82 chr11 70085118 70085655 -51758201 - L1M3c LINE L1 -355 6784 6232 1 1119 378 0 0 0 chr11 70085677 70085719 -51758137 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1119 1268 50 6 6 chr11 70085719 70085869 -51757987 - B2_Mm2 SINE B2 -43 152 2 1 1119 565 294 182 21 chr11 70085873 70086297 -51757559 - L1M3c LINE L1 -867 6239 5748 1 1119 309 68 0 0 chr11 70086618 70086662 -51757194 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1119 468 0 0 0 chr11 70086662 70086713 -51757143 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1119 312 229 143 12 chr11 70087068 70087198 -51756658 + MIR SINE MIR 106 255 -7 1 1119 741 182 6 112 chr11 70087273 70087452 -51756404 + RSINE1 SINE B4 4 163 -2 1 1119 255 330 22 0 chr11 70087603 70087694 -51756162 - PB1D10 SINE Alu -24 93 1 1 1119 296 271 114 24 chr11 70087700 70087911 -51755945 - L1M3c LINE L1 -4876 2161 1926 1 1119 304 253 164 46 chr11 70087994 70088189 -51755667 - L1M3c LINE L1 -5111 1926 1709 1 1119 409 213 83 13 chr11 70088310 70088402 -51755454 + RMER17C LTR ERVK 103 203 -207 1 1119 575 27 0 14 chr11 70088402 70088476 -51755380 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1119 409 213 83 13 chr11 70088476 70088540 -51755316 + RMER17C LTR ERVK 204 270 -140 1 1119 301 253 55 25 chr11 70089072 70089165 -51754691 + PB1D10 SINE Alu 19 127 0 1 1119 1157 255 46 34 chr11 70089440 70089781 -51754075 + MER31A LTR ERV1 144 485 0 1 1119 301 326 6 125 chr11 70090234 70090313 -51753543 - ID_B1 SINE B4 0 224 157 1 1119 1192 68 0 0 chr11 70090313 70090460 -51753396 - B1_Mm SINE Alu 0 147 1 1 1119 301 326 6 125 chr11 70090460 70090473 -51753383 - ID_B1 SINE B4 -68 156 153 1 1119 897 200 58 29 chr11 70090473 70090508 -51753348 - B3 SINE B2 -3 213 179 1 1119 303 28 0 0 chr11 70090508 70090544 -51753312 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1119 897 200 58 29 chr11 70090544 70090714 -51753142 - B3 SINE B2 -38 178 3 1 1119 301 326 6 125 chr11 70090714 70090788 -51753068 - ID_B1 SINE B4 -72 152 78 1 1119 239 252 40 11 chr11 70090855 70090965 -51752891 + L1MA10 LINE L1 6266 6333 -1 1 1119 2524 67 3 0 chr11 70091123 70091439 -51752417 + ORR1A2 LTR MaLR 3 319 -8 1 1119 391 148 0 0 chr11 70091697 70091758 -51752098 - PB1D10 SINE Alu -51 66 6 1 1119 555 223 224 46 chr11 70091940 70091951 -51751905 - B3 SINE B2 -7 209 203 1 1119 200 34 0 33 chr11 70091951 70091981 -51751875 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1119 555 223 224 46 chr11 70091981 70092143 -51751713 - B3 SINE B2 -14 202 5 1 1119 1471 194 143 33 chr11 70092889 70093019 -51750837 + MTD LTR MaLR 3 127 -292 1 1119 3103 61 15 3 chr11 70093019 70093411 -51750445 + MTB LTR MaLR 3 399 -1 1 1119 1471 194 143 33 chr11 70093411 70093643 -51750213 + MTD LTR MaLR 128 405 -14 1 1119 1158 61 0 13 chr11 70094453 70094464 -51749392 - B1_Mm SINE Alu 0 147 138 1 1119 234 0 0 0 chr11 70094464 70094490 -51749366 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1119 1158 61 0 13 chr11 70094490 70094627 -51749229 - B1_Mm SINE Alu -10 137 1 1 1119 432 191 0 0 chr11 70094775 70094864 -51748992 + CT-rich Low_complexity Low_complexity 3 91 0 2 1119 366 255 114 34 chr11 70094884 70095148 -51748708 + RMER17A LTR ERVK 172 456 -295 2 1119 310 284 14 0 chr11 70095434 70095508 -51748348 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1119 636 210 21 35 chr11 70095848 70095991 -51747865 + B1_Mur3 SINE Alu 2 142 -7 2 1119 293 62 0 20 chr11 70095996 70096045 -51747811 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 1119 1478 214 184 44 chr11 70096064 70096542 -51747314 - RLTR33 LTR ERVK -3 675 131 2 1119 195 42 0 0 chr11 70096558 70096582 -51747274 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1119 297 0 0 0 chr11 70096585 70096618 -51747238 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1119 263 250 59 12 chr11 70097043 70097128 -51746728 + MLT1G3 LTR MaLR 433 521 -74 2 1119 431 162 0 0 chr11 70097198 70097266 -51746590 - B1_Mus2 SINE Alu -78 69 2 2 1119 560 256 97 52 chr11 70097436 70097724 -51746132 - RLTR15 LTR ERVK -58 301 1 2 1119 675 206 0 75 chr11 70097724 70097871 -51745985 + MTD LTR MaLR 67 202 -217 2 1119 901 121 140 29 chr11 70098041 70098212 -51745644 - B2_Mm2 SINE B2 -4 191 2 2 1119 290 348 92 45 chr11 70098323 70098705 -51745151 + L1M5 LINE L1 5381 5780 -344 2 1119 374 271 22 52 chr11 70098804 70098940 -51744916 - MLT1K LTR MaLR -1 594 463 2 1119 1187 285 13 3 chr11 70099080 70099390 -51744466 - Lx5 LINE L1 -4 7046 6734 2 1119 869 88 84 42 chr11 70099439 70099582 -51744274 - B1_Mur4 SINE Alu 0 150 2 2 1119 214 371 0 14 chr11 70099796 70099867 -51743989 - MIRb SINE MIR -90 178 109 2 1119 312 27 0 0 chr11 70100236 70100273 -51743583 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1119 308 242 7 0 chr11 70100277 70100430 -51743426 + CT-rich Low_complexity Low_complexity 1 154 0 2 1119 353 248 67 17 chr11 70100662 70100781 -51743075 + B1F2 SINE Alu 10 134 -15 2 1119 431 259 129 110 chr11 70100792 70101109 -51742747 + HAL1 LINE L1 1310 1632 -875 2 1119 297 109 0 0 chr11 70101371 70101417 -51742439 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2 1119 374 263 40 0 chr11 70101417 70101516 -51742340 - PB1D10 SINE Alu -5 112 10 2 1119 920 176 69 20 chr11 70102276 70102479 -51741377 + B3 SINE B2 1 213 -3 2 1119 192 97 0 0 chr11 70102552 70102583 -51741273 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1119 261 327 178 0 chr11 70103025 70103126 -51740730 - MLT1H LTR MaLR -356 193 75 2 1119 1351 62 89 0 chr11 70103555 70103575 -51740281 - B2_Mm2 SINE B2 0 195 163 2 1119 312 27 0 0 chr11 70103575 70103612 -51740244 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 1119 1351 62 89 0 chr11 70103612 70103770 -51740086 - B2_Mm2 SINE B2 -33 162 2 2 1119 801 266 16 5 chr11 70103979 70104172 -51739684 - ID_B1 SINE B4 -21 203 9 2 1119 1457 231 34 15 chr11 70104237 70104563 -51739293 - Lx5 LINE L1 0 7050 6719 2 1119 968 298 71 97 chr11 70104633 70105086 -51738770 + LTR33A LTR ERVL 80 520 0 2 1119 211 286 159 0 chr11 70105188 70105251 -51738605 + B3A SINE B2 97 169 -29 2 1119 220 286 55 0 chr11 70106391 70106482 -51737374 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 2 1119 816 247 110 23 chr11 70106529 70106872 -51736984 - L1MA4 LINE L1 -278 6025 5657 2 1119 534 309 62 24 chr11 70106878 70107087 -51736769 - MT2A LTR ERVL 0 533 317 2 1119 422 270 18 0 chr11 70107085 70107196 -51736660 - MTEa LTR MaLR -264 115 3 2 1119 507 255 10 0 chr11 70107426 70107528 -51736328 - PB1D9 SINE Alu -13 107 5 2 1119 430 244 48 66 chr11 70108276 70108443 -51735413 + RNLTR23 LTR ERVK 479 642 0 2 1119 200 188 0 0 chr11 70108443 70108475 -51735381 + (CACCAT)n Simple_repeat Simple_repeat 5 36 0 2 1119 352 286 0 0 chr11 70108558 70108635 -51735221 - B4 SINE B4 -215 77 1 2 1119 794 228 4 97 chr11 70108967 70109205 -51734651 + B3 SINE B2 1 216 0 2 1119 850 140 0 29 chr11 70109231 70109371 -51734485 + B1_Mus1 SINE Alu 1 136 -12 2 1119 284 0 0 27 chr11 70109371 70109408 -51734448 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1119 270 314 139 0 chr11 70109650 70109736 -51734120 + PB1D10 SINE Alu 12 109 -8 2 1119 590 279 17 76 chr11 70110026 70110263 -51733593 - Lx6 LINE L1 -4 7456 7234 2 1119 306 0 0 0 chr11 70110938 70110972 -51732884 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1119 211 233 288 17 chr11 70110972 70111090 -51732766 + MIRc SINE MIR 31 180 -88 2 1119 365 238 12 12 chr11 70111315 70111396 -51732460 - PB1D10 SINE Alu -34 83 3 2 1119 431 231 0 0 chr11 70111952 70112030 -51731826 - ID_B1 SINE B4 -41 183 106 2 1119 31 0 0 0 chr11 70112037 70112068 -51731788 + AT_rich Low_complexity Low_complexity 1 31 0 2 1119 1159 75 7 0 chr11 70112071 70112217 -51731639 - B1_Mus1 SINE Alu 0 148 2 2 1119 1390 105 16 0 chr11 70112220 70112411 -51731445 - B2_Mm2 SINE B2 -1 194 1 2 1119 366 252 49 29 chr11 70112416 70112518 -51731338 - L1MC3 LINE L1 -1182 6603 6500 2 1119 801 181 7 20 chr11 70112741 70112888 -51730968 - B1_Mur1 SINE Alu 0 149 5 2 1119 183 156 0 0 chr11 70113262 70113294 -51730562 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1119 737 297 77 18 chr11 70113397 70113671 -51730185 + B4A SINE B4 2 291 -1 2 1119 453 161 40 0 chr11 70113694 70113843 -51730013 + (CA)n Simple_repeat Simple_repeat 1 155 0 2 1119 531 250 8 0 chr11 70113967 70114087 -51729769 - RSINE1 SINE B4 -2 163 43 2 1119 379 245 121 20 chr11 70114165 70114344 -51729512 - B4A SINE B4 -105 187 19 2 1119 580 117 29 0 chr11 70114359 70114462 -51729394 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 2 1119 909 167 0 0 chr11 70114468 70114600 -51729256 - B1_Mur1 SINE Alu -9 140 9 2 1119 1066 195 28 5 chr11 70114633 70114844 -51729012 - B3 SINE B2 0 216 1 2 1119 934 130 20 7 chr11 70115713 70115860 -51727996 + B1_Mur4 SINE Alu 1 149 -1 2 1119 425 300 43 44 chr11 70116190 70116434 -51727422 - L1M3 LINE L1 -1087 5056 4801 2 1119 306 73 0 0 chr11 70116530 70116571 -51727285 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 1119 261 220 0 0 chr11 70116633 70116683 -51727173 + B1F SINE Alu 100 149 0 2 1119 313 297 103 99 chr11 70116687 70116792 -51727064 - L1M4 LINE L1 -699 5475 5363 2 1119 3045 67 3 0 chr11 70116792 70117180 -51726676 - L1Md_F2 LINE L1 0 6582 6194 2 1119 313 297 103 99 chr11 70117180 70117287 -51726569 - L1M4 LINE L1 -812 5362 5262 2 1119 347 254 30 130 chr11 70117462 70117478 -51726378 - LTR40b LTR ERVL -13 449 435 2 1119 1161 166 78 5 chr11 70117478 70117684 -51726172 + URR1B DNA MER1_type 5 225 0 2 1119 347 254 30 130 chr11 70117684 70117798 -51726058 - LTR40b LTR ERVL -28 434 332 2 1119 293 286 145 124 chr11 70117822 70118105 -51725751 - MTEb LTR MaLR 0 359 71 2 1119 464 234 27 27 chr11 70118148 70118258 -51725598 - MTE-int LTR MaLR -57 1523 1414 2 1119 330 26 0 0 chr11 70118258 70118297 -51725559 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 1119 326 325 80 37 chr11 70118300 70118362 -51725494 - MTE-int LTR MaLR -241 1339 1279 2 1119 4690 150 40 12 chr11 70118362 70119194 -51724662 - RLTR13A LTR ERVK 0 855 1 2 1119 326 325 80 37 chr11 70119194 70119294 -51724562 - MTE-int LTR MaLR -302 1278 1170 2 1119 878 185 38 6 chr11 70119308 70119466 -51724390 + B3 SINE B2 1 163 -53 2 1119 335 305 104 31 chr11 70119641 70119834 -51724022 + LTR73 LTR ERV1 1 207 -365 2 1119 333 0 0 0 chr11 70119985 70120022 -51723834 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1119 284 269 28 9 chr11 70121029 70121138 -51722718 + (CA)n Simple_repeat Simple_repeat 1 111 0 2 1119 328 307 96 23 chr11 70121305 70121525 -51722331 + L1MD LINE L1 4532 4767 -1379 2 1119 1451 112 51 19 chr11 70121555 70121811 -51722045 + L1Md_A LINE L1 6319 6582 0 2 1119 276 30 0 0 chr11 70121891 70121924 -51721932 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2 1119 829 223 18 24 chr11 70121938 70122108 -51721748 - B3 SINE B2 -42 174 6 2 1119 511 272 53 143 chr11 70122110 70122264 -51721592 + L1MD LINE L1 4924 5080 -1066 2 1119 1028 122 7 0 chr11 70122264 70122412 -51721444 + B1_Mur4 SINE Alu 2 150 0 2 1119 511 272 53 143 chr11 70122412 70122523 -51721333 + L1MD LINE L1 5081 5165 -981 2 1119 563 263 29 0 chr11 70123318 70123489 -51720367 + L1MB2 LINE L1 5594 5769 -420 2 1120 739 149 41 34 chr11 70123763 70123909 -51719947 - Lx9 LINE L1 -194 7450 7304 2 1120 1698 176 62 6 chr11 70123906 70124260 -51719596 + Lx9 LINE L1 6942 7315 -329 2 1120 1748 16 0 0 chr11 70124403 70124596 -51719260 + B2_Mm1a SINE B2 1 193 0 2 1120 1538 207 144 109 chr11 70124780 70125169 -51718687 - MT2A LTR ERVL 0 533 118 2 1120 1404 75 16 11 chr11 70125169 70125357 -51718499 - B2_Mm2 SINE B2 -6 189 1 2 1120 1538 207 144 109 chr11 70125357 70125481 -51718375 - MT2A LTR ERVL -416 117 2 2 1120 1137 114 0 0 chr11 70125948 70126097 -51717759 + B1_Mur4 SINE Alu 2 150 0 2 1120 311 182 7 110 chr11 70126132 70126268 -51717588 + L1MB2 LINE L1 5779 5900 -271 2 1120 484 210 35 35 chr11 70126457 70126600 -51717256 - L1M2 LINE L1 -987 5156 5014 2 1120 504 256 77 0 chr11 70126628 70126745 -51717111 - B4A SINE B4 -6 286 161 2 1120 486 354 17 62 chr11 70126745 70127215 -51716641 - L1MA6 LINE L1 -258 6042 5594 2 1120 911 138 55 39 chr11 70127446 70127627 -51716229 - B2_Mm2 SINE B2 -10 185 2 2 1120 437 299 7 69 chr11 70127667 70127811 -51716045 - RSINE1 SINE B4 -4 161 27 2 1120 218 56 28 0 chr11 70127813 70127849 -51716007 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1120 1117 282 122 83 chr11 70127887 70128779 -51715077 - L1MA6 LINE L1 -1071 5072 4146 2 1120 182 37 0 36 chr11 70130138 70130166 -51713690 + (GTCTG)n Simple_repeat Simple_repeat 3 29 0 2 1120 2608 173 66 4 chr11 70130207 70130765 -51713091 + Lx9 LINE L1 7008 7600 -44 2 1120 330 143 0 0 chr11 70132026 70132089 -51711767 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1120 232 244 11 79 chr11 70132102 70132191 -51711665 + LTR16B2 LTR ERVL 244 326 -136 2 1120 514 310 63 48 chr11 70133815 70134022 -51709834 + MER20 DNA MER1_type 8 217 -2 3 1120 1166 28 21 7 chr11 70136809 70136945 -51706911 + B1_Mus2 SINE Alu 1 139 -8 3 1120 279 21 20 40 chr11 70136945 70136995 -51706861 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1120 231 309 61 20 chr11 70137089 70137188 -51706668 - Tigger13a DNA MER2_type -275 496 394 3 1120 591 79 0 0 chr11 70137318 70137394 -51706462 - B1_Mur4 SINE Alu -32 118 43 3 1120 236 168 110 73 chr11 70137329 70137438 -51706418 - RLTR25B LTR ERVK -519 509 397 3 1120 327 138 17 33 chr11 70137488 70137548 -51706308 - B1_Mus2 SINE Alu -88 59 1 3 1120 324 0 0 0 chr11 70137843 70137879 -51705977 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1120 768 323 4 30 chr11 70137879 70138109 -51705747 - B4A SINE B4 -23 269 46 3 1120 228 316 154 26 chr11 70138131 70138248 -51705608 - Tigger13a DNA MER2_type -577 194 63 3 1120 417 273 49 55 chr11 70138926 70139089 -51704767 + RSINE1 SINE B4 3 164 -1 3 1120 424 86 14 14 chr11 70139100 70139171 -51704685 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1120 231 36 0 0 chr11 70139498 70139526 -51704330 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 3 1120 302 239 0 11 chr11 70139526 70139619 -51704237 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1120 447 261 90 54 chr11 70139623 70139902 -51703954 - L1MA6 LINE L1 -1 6299 6011 3 1120 2411 116 120 21 chr11 70139909 70140341 -51703515 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1120 203 140 23 23 chr11 70140430 70140474 -51703382 + T-rich Low_complexity Low_complexity 3 46 0 3 1120 996 186 84 15 chr11 70140484 70140686 -51703170 - B3 SINE B2 0 216 1 3 1120 1456 253 39 17 chr11 70140897 70141307 -51702549 + MTD LTR MaLR 1 419 0 3 1120 5920 104 56 55 chr11 70142402 70143359 -51700497 - RMER17B LTR ERVK 0 958 1 3 1120 551 215 74 0 chr11 70144038 70144159 -51699697 + ID_B1 SINE B4 92 221 -3 3 1120 516 201 0 0 chr11 70144862 70145094 -51698762 + (TG)n Simple_repeat Simple_repeat 1 232 0 3 1120 294 252 192 72 chr11 70145094 70145261 -51698595 - B3A SINE B2 -11 187 1 3 1120 248 343 39 10 chr11 70145549 70145652 -51698204 - LTR86A2 LTR ERVL -363 145 40 3 1120 500 230 32 203 chr11 70145784 70146035 -51697821 + Lx6 LINE L1 7248 7455 -5 3 1120 835 225 219 23 chr11 70146788 70147090 -51696766 + MTD LTR MaLR 46 405 -14 3 1120 4275 80 36 19 chr11 70147090 70147667 -51696189 + LTRIS_Mus LTR ERV1 1 587 0 3 1120 270 81 0 0 chr11 70147777 70147814 -51696042 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1120 1104 88 0 7 chr11 70147814 70147963 -51695893 - B1_Mus1 SINE Alu 0 148 1 3 1120 1022 213 5 25 chr11 70148238 70148440 -51695416 + B3 SINE B2 19 216 0 3 1120 1110 211 15 0 chr11 70148577 70148781 -51695075 + B3 SINE B2 1 207 -9 3 1120 877 252 84 20 chr11 70149194 70149450 -51694406 + MER92B LTR ERV1 1 356 -198 3 1120 540 316 43 16 chr11 70149491 70149748 -51694108 - L1MA5 LINE L1 -51 6249 5986 3 1120 396 281 58 29 chr11 70149901 70150040 -51693816 + MER92B LTR ERV1 266 408 -228 3 1120 1491 221 82 14 chr11 70150102 70150456 -51693400 + MTE2b LTR MaLR 1 378 -1 3 1120 501 232 114 18 chr11 70150493 70150607 -51693249 + ID_B1 SINE B4 94 218 -6 3 1120 669 304 86 60 chr11 70150668 70150902 -51692954 + B4A SINE B4 52 291 -1 3 1120 455 151 11 0 chr11 70150903 70150996 -51692860 + (CA)n Simple_repeat Simple_repeat 1 94 0 3 1120 381 22 0 0 chr11 70151015 70151061 -51692795 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1120 206 229 21 0 chr11 70151061 70151109 -51692747 + G-rich Low_complexity Low_complexity 1 49 0 3 1120 345 190 234 24 chr11 70151114 70151238 -51692618 - RSINE1 SINE B4 -14 151 2 3 1120 674 209 15 2 chr11 70151281 70151433 -51692423 + B3A SINE B2 2 153 -63 3 1120 441 0 0 0 chr11 70151434 70151483 -51692373 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1120 294 29 0 0 chr11 70151484 70151519 -51692337 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1120 180 0 0 0 chr11 70151520 70151540 -51692316 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1120 1406 81 0 36 chr11 70152009 70152202 -51691654 - B2_Mm2 SINE B2 -8 187 2 3 1120 309 375 70 14 chr11 70152211 70152555 -51691301 - L1ME3A LINE L1 -14 6159 5797 3 1120 27 0 0 0 chr11 70152721 70152748 -51691108 + AT_rich Low_complexity Low_complexity 1 27 0 3 1120 1307 252 17 14 chr11 70153266 70153620 -51690236 + Lx6 LINE L1 7093 7447 -13 3 1120 2402 99 12 0 chr11 70153637 70153960 -51689896 - ORR1A2 LTR MaLR 0 327 1 3 1120 477 293 171 43 chr11 70154058 70154315 -51689541 + B4A SINE B4 3 292 0 3 1120 329 314 134 39 chr11 70154463 70154695 -51689161 + L1ME1 LINE L1 3907 4160 -1986 3 1120 267 311 48 24 chr11 70154780 70154945 -51688911 + L1ME1 LINE L1 5835 6003 -176 3 1120 1694 192 65 25 chr11 70155180 70155581 -51688275 - MTD LTR MaLR -2 417 1 3 1120 477 0 0 0 chr11 70155928 70155981 -51687875 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1120 701 164 9 18 chr11 70155981 70156093 -51687763 - PB1D9 SINE Alu -9 111 1 3 1120 421 303 6 11 chr11 70156143 70156258 -51687598 + PB1D10 SINE Alu 9 128 -20 3 1120 531 0 0 0 chr11 70156258 70156317 -51687539 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3 1120 239 279 15 0 chr11 70157088 70157156 -51686700 + ID4 SINE ID 3 71 -12 3 1120 241 273 0 29 chr11 70158846 70158914 -51684942 + Lx8 LINE L1 6942 7007 -466 3 1120 189 139 0 0 chr11 70160529 70160572 -51683284 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1120 252 307 186 16 chr11 70162216 70162345 -51681511 - RMER21A LTR ERV1 -263 684 534 3 1120 196 365 165 0 chr11 70162511 70162596 -51681260 - MIRb SINE MIR -130 138 40 3 1120 534 16 0 0 chr11 70165846 70165909 -51677947 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1120 378 74 0 0 chr11 70165909 70165962 -51677894 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1120 387 269 74 25 chr11 70167583 70167710 -51676146 + B3 SINE B2 30 160 -56 3 1120 735 156 14 0 chr11 70167768 70167909 -51675947 + L1Md_T LINE L1 6440 6582 0 3 1120 254 273 58 77 chr11 70168172 70168327 -51675529 + L1MD3 LINE L1 6726 6877 -1118 3 1120 641 212 170 21 chr11 70168653 70168841 -51675015 - B3 SINE B2 0 216 1 3 1120 2570 170 76 59 chr11 70169132 70170054 -51673802 - RLTR13D1 LTR ERVK 0 893 1 3 1120 234 0 0 0 chr11 70170332 70170358 -51673498 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1120 785 254 29 34 chr11 70170686 70170890 -51672966 + B3 SINE B2 1 203 -13 3 1120 27 0 0 0 chr11 70173847 70173874 -51669982 + AT_rich Low_complexity Low_complexity 1 27 0 3 1120 713 150 9 0 chr11 70174446 70174559 -51669297 + RLTR13C1 LTR ERVK 1 114 -869 3 1120 949 185 57 71 chr11 70174559 70174921 -51668935 + RLTRETN_Mm LTR ERVK 1 409 0 3 1120 4111 149 27 112 chr11 70174922 70175896 -51667960 + MMETn-int LTR ERVK 1 891 -3953 3 1120 480 202 127 16 chr11 70175885 70176011 -51667845 + MMETn-int LTR ERVK 1949 2088 -5318 3 1120 2782 132 37 52 chr11 70176033 70176781 -51667075 + MMETn-int LTR ERVK 1721 3135 -4271 3 1120 1226 50 0 0 chr11 70177348 70177508 -51666348 + B2_Mm1t SINE B2 1 160 -33 3 1120 243 0 0 0 chr11 70177508 70177535 -51666321 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1120 189 74 0 0 chr11 70177634 70177661 -51666195 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1120 8721 182 39 25 chr11 70177664 70179143 -51664713 + MMETn-int LTR ERVK 2356 4085 -3321 3 1120 2271 8 114 0 chr11 70179143 70179405 -51664451 + RLTR10B LTR ERVK 1 292 0 3 1120 8721 188 60 48 chr11 70179405 70179848 -51664008 + MMETn-int LTR ERVK 2970 3423 -1421 3 1120 253 0 54 0 chr11 70179848 70179885 -51663971 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1120 8721 188 60 48 chr11 70179885 70180929 -51662927 + MMETn-int LTR ERVK 3424 4498 -346 3 1120 520 205 221 26 chr11 70180929 70181226 -51662630 + RLTR13B1 LTR ERVK 153 531 -371 3 1120 519 65 24 72 chr11 70181230 70181313 -51662543 + ETnERV2-int LTR ERVK 7327 7405 -1 3 1120 1021 173 27 145 chr11 70181313 70181678 -51662178 + RLTRETN_Mm LTR ERVK 1 322 0 3 1120 5527 93 45 5 chr11 70181682 70181727 -51662129 + RLTR13D5 LTR ERVK 113 174 -849 3 1120 4706 48 0 0 chr11 70181727 70182288 -51661568 - L1Md_F2 LINE L1 -8 6574 6014 3 1120 5527 93 45 5 chr11 70182288 70183118 -51660738 + RLTR13D5 LTR ERVK 175 1022 -1 3 1120 244 289 0 66 chr11 70183287 70183409 -51660447 - B1F SINE Alu -1 148 35 3 1120 415 192 61 0 chr11 70183555 70183654 -51660202 + B1_Mur1 SINE Alu 43 147 -2 3 1120 483 242 30 15 chr11 70184004 70184138 -51659718 + B1F SINE Alu 6 141 -8 3 1120 905 129 6 17 chr11 70184150 70184277 -51659579 + polypurine Low_complexity Low_complexity 2 126 0 3 1120 1040 101 11 11 chr11 70184277 70184457 -51659399 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1120 905 129 6 17 chr11 70184457 70184474 -51659382 + polypurine Low_complexity Low_complexity 127 144 0 3 1120 1270 34 5 27 chr11 70184474 70184658 -51659198 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1120 905 129 6 17 chr11 70184658 70184693 -51659163 + polypurine Low_complexity Low_complexity 145 179 0 3 1120 1377 209 158 11 chr11 70184737 70185091 -51658765 + MTD LTR MaLR 6 411 -8 3 1120 258 242 0 70 chr11 70185346 70185488 -51658368 + (CCA)n Simple_repeat Simple_repeat 3 134 0 3 1120 469 281 150 12 chr11 70185495 70185768 -51658088 - L1MC LINE L1 -2578 3568 3275 3 1120 366 277 109 26 chr11 70185781 70185974 -51657882 - L1MEf LINE L1 -2939 3605 3397 3 1120 408 325 19 73 chr11 70185980 70186186 -51657670 + MER63A DNA AcHobo 1 195 -15 3 1120 562 310 95 31 chr11 70186223 70186868 -51656988 - L1MEf LINE L1 -3191 3353 2668 3 1120 759 191 0 42 chr11 70186983 70187125 -51656731 + B1_Mur4 SINE Alu 2 137 -13 3 1120 573 15 0 0 chr11 70187126 70187192 -51656664 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1120 222 37 0 0 chr11 70187192 70187219 -51656637 + (GGA)n Simple_repeat Simple_repeat 3 29 0 3 1120 1097 113 6 0 chr11 70187219 70187396 -51656460 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 1120 488 211 0 0 chr11 70187709 70187799 -51656057 - PB1D10 SINE Alu -22 95 6 3 1120 457 277 64 6 chr11 70187805 70187961 -51655895 + L1MEf LINE L1 1495 1659 -4541 4 1120 957 207 9 33 chr11 70188066 70188276 -51655580 + B3 SINE B2 7 211 -5 4 1120 947 313 116 9 chr11 70188527 70189081 -51654775 - L1MEf LINE L1 -5023 1617 1005 3 1120 305 269 97 0 chr11 70189334 70189427 -51654429 + RSINE1 SINE B4 3 104 -61 4 1120 447 289 56 79 chr11 70189768 70189982 -51653874 - L1MEf LINE L1 -5711 929 657 3 1120 30 59 0 0 chr11 70190214 70190265 -51653591 + AT_rich Low_complexity Low_complexity 1 51 0 4 1120 589 254 22 22 chr11 70190372 70190557 -51653299 + Lx7 LINE L1 6895 7079 -617 4 1120 286 188 171 14 chr11 70190847 70190917 -51652939 - ID4_ SINE ID -1 82 2 4 1120 332 214 631 0 chr11 70190975 70191105 -51652751 + B3 SINE B2 1 212 -4 4 1120 266 250 15 0 chr11 70191233 70191301 -51652555 - RSINE1 SINE B4 -19 146 78 4 1120 236 302 77 54 chr11 70191328 70191496 -51652360 - B4A SINE B4 -120 172 1 4 1120 357 245 170 0 chr11 70191687 70191793 -51652063 - ID_B1 SINE B4 -9 215 92 4 1120 907 232 52 0 chr11 70192155 70192349 -51651507 + B3 SINE B2 1 204 -12 4 1120 278 214 103 37 chr11 70192601 70192708 -51651148 + MLT1G3-int LTR MaLR 492 605 -884 4 1120 429 282 63 16 chr11 70192771 70192897 -51650959 + ID_B1 SINE B4 82 213 -11 4 1120 398 237 106 71 chr11 70192897 70192912 -51650944 + B1F SINE Alu 1 146 -3 4 1120 432 0 0 0 chr11 70193358 70193406 -51650450 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1120 241 324 228 0 chr11 70193474 70193619 -51650237 + MLT1G3-int LTR MaLR 1305 1482 -7 4 1120 560 340 124 58 chr11 70193626 70194155 -51649701 + MLT1G3 LTR MaLR 1 579 0 4 1120 189 74 0 0 chr11 70194806 70194833 -51649023 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 4 1120 321 26 0 0 chr11 70194857 70194895 -51648961 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1120 468 313 105 35 chr11 70195421 70195822 -51648034 + HAL1 LINE L1 1409 1837 -670 4 1120 392 177 276 26 chr11 70195886 70196002 -51647854 + B1_Mur1 SINE Alu 2 146 -3 4 1120 23 54 0 0 chr11 70196036 70196073 -51647783 + AT_rich Low_complexity Low_complexity 1 37 0 4 1120 1162 62 14 0 chr11 70196106 70196251 -51647605 - B1_Mus1 SINE Alu 0 148 2 4 1120 368 225 28 0 chr11 70196678 70196749 -51647107 - PB1D9 SINE Alu -44 76 4 4 1120 445 202 97 0 chr11 70196750 70196864 -51646992 - B4 SINE B4 -63 229 105 4 1120 1172 48 7 7 chr11 70196888 70197034 -51646822 - B1_Mus2 SINE Alu 0 147 2 4 1120 266 243 178 37 chr11 70197102 70197209 -51646647 - B3A SINE B2 -67 131 10 4 1120 424 255 20 0 chr11 70197212 70197310 -51646546 - B4 SINE B4 -191 101 2 4 1120 940 168 92 48 chr11 70197323 70197530 -51646326 - B3 SINE B2 0 216 1 4 1120 916 130 65 0 chr11 70197776 70197914 -51645942 + B1_Mus2 SINE Alu 1 147 0 4 1120 26 0 0 0 chr11 70198094 70198120 -51645736 + AT_rich Low_complexity Low_complexity 1 26 0 4 1120 413 204 87 0 chr11 70198135 70198238 -51645618 + PB1D9 SINE Alu 7 118 -2 4 1120 387 184 84 37 chr11 70198559 70198666 -51645190 - PB1D9 SINE Alu 0 120 9 4 1120 580 196 0 124 chr11 70198899 70199068 -51644788 - B1_Mur1 SINE Alu 0 149 2 4 1120 1282 66 72 0 chr11 70199423 70199604 -51644252 + B2_Mm2 SINE B2 2 195 0 4 1120 340 242 154 15 chr11 70199716 70199846 -51644010 + RSINE1 SINE B4 3 150 -15 4 1120 607 224 83 1 chr11 70199871 70200022 -51643834 + B3A SINE B2 1 157 -38 4 1120 249 108 0 0 chr11 70200022 70200059 -51643797 + (CATA)n Simple_repeat Simple_repeat 2 38 0 4 1120 501 276 54 16 chr11 70200059 70200091 -51643765 + B2_Mm2 SINE B2 158 190 -5 4 1120 1118 62 14 0 chr11 70200125 70200269 -51643587 + B1_Mus1 SINE Alu 1 146 -2 4 1120 1254 88 12 0 chr11 70202287 70202458 -51641398 + B2_Mm2 SINE B2 4 176 -19 4 1120 364 199 267 34 chr11 70202558 70202704 -51641152 + B3A SINE B2 3 182 -16 4 1120 219 196 65 0 chr11 70202872 70202918 -51640938 + ID4_ SINE ID 35 83 0 4 1120 1204 82 58 6 chr11 70203280 70203451 -51640405 + B2_Mm2 SINE B2 2 181 -14 4 1120 408 155 0 0 chr11 70203516 70203587 -51640269 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 4 1120 222 113 0 54 chr11 70203814 70203870 -51639986 + (CAGCC)n Simple_repeat Simple_repeat 5 57 0 4 1120 347 41 20 0 chr11 70204002 70204051 -51639805 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1120 225 0 0 0 chr11 70204051 70204076 -51639780 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1120 285 248 58 29 chr11 70205012 70205116 -51638740 - Tigger5 DNA MER2_type -146 2260 2154 4 1120 540 231 169 11 chr11 70205237 70205421 -51638435 - ID_B1 SINE B4 -10 214 2 4 1120 749 279 49 5 chr11 70205469 70205674 -51638182 - B3 SINE B2 -2 214 1 4 1120 195 42 0 0 chr11 70205996 70206020 -51637836 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 4 1120 314 153 10 0 chr11 70206662 70206720 -51637136 + Lx4B LINE L1 6729 6812 -246 4 1120 186 43 0 0 chr11 70206873 70206896 -51636960 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1120 186 43 0 0 chr11 70206923 70206946 -51636910 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1120 267 356 0 11 chr11 70206999 70207178 -51636678 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 4 1120 539 174 0 65 chr11 70207681 70207866 -51635990 + CT-rich Low_complexity Low_complexity 1 173 0 4 1120 267 31 0 0 chr11 70207984 70208016 -51635840 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 4 1120 213 177 260 40 chr11 70209283 70209358 -51634498 + MIRc SINE MIR 68 155 -113 4 1120 500 154 11 21 chr11 70211332 70211425 -51632431 - B3 SINE B2 -124 92 1 4 1120 693 248 118 16 chr11 70212795 70213041 -51630815 + MER54A LTR ERVL 1 271 -630 4 1120 301 208 125 38 chr11 70213054 70213134 -51630722 - RSINE1 SINE B4 -76 89 3 4 1120 23 33 0 0 chr11 70213212 70213242 -51630614 + AT_rich Low_complexity Low_complexity 1 30 0 4 1120 195 42 0 0 chr11 70213338 70213362 -51630494 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1120 1007 109 0 0 chr11 70213362 70213499 -51630357 - B1_Mus2 SINE Alu -10 137 1 4 1120 259 341 0 11 chr11 70213625 70213714 -51630142 - Tigger7 DNA MER2_type -10 2481 2394 4 1120 357 219 52 0 chr11 70213810 70213906 -51629950 - Tigger7 DNA MER2_type -94 2397 2297 4 1120 563 205 95 13 chr11 70214032 70214190 -51629666 + Tigger7 DNA MER2_type 341 511 -1980 4 1120 985 190 24 33 chr11 70214469 70214681 -51629175 + B3 SINE B2 3 212 -4 4 1120 21 0 0 0 chr11 70214685 70214706 -51629150 + AT_rich Low_complexity Low_complexity 1 21 0 4 1120 1268 27 0 0 chr11 70214708 70214855 -51629001 + B1_Mus2 SINE Alu 1 147 0 4 1120 249 159 0 0 chr11 70214857 70214901 -51628955 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 4 1120 683 168 50 0 chr11 70215669 70215788 -51628068 + B3 SINE B2 6 130 -86 4 1120 361 280 21 0 chr11 70216355 70216448 -51627408 + PB1 SINE Alu 1 95 -32 4 1120 279 0 0 0 chr11 70216491 70216522 -51627334 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1120 543 178 65 0 chr11 70216539 70216646 -51627210 - RSINE1 SINE B4 -40 125 12 4 1120 192 333 56 0 chr11 70216684 70216738 -51627118 + L2 LINE L2 1331 1387 -2032 4 1120 266 283 92 21 chr11 70218027 70218168 -51625688 + MLT1A1 LTR MaLR 246 396 -12 4 1120 858 70 0 0 chr11 70219584 70219698 -51624158 - B1_Mus1 SINE Alu -34 114 1 4 1120 502 318 39 0 chr11 70220467 70220621 -51623235 + RSINE1 SINE B4 6 165 0 4 1120 24 0 0 0 chr11 70220637 70220661 -51623195 + AT_rich Low_complexity Low_complexity 1 24 0 4 1120 756 158 14 41 chr11 70220669 70220814 -51623042 + B1_Mur3 SINE Alu 9 149 0 4 1120 546 162 161 23 chr11 70221137 70221270 -51622586 + B1_Mus1 SINE Alu 1 147 -1 4 1120 741 207 49 49 chr11 70221278 70221461 -51622395 + B3 SINE B2 28 210 -6 4 1120 576 168 21 32 chr11 70222329 70222467 -51621389 + B1_Mur1 SINE Alu 1 149 0 4 1120 1011 45 105 0 chr11 70224012 70224145 -51619711 - B1_Mm SINE Alu 0 147 1 4 1120 187 311 16 0 chr11 70224186 70224247 -51619609 + L2 LINE L2 2762 2823 -596 4 1120 291 245 84 84 chr11 70224247 70224354 -51619502 - PB1D7 SINE Alu -1 119 13 4 1120 1165 82 0 7 chr11 70224412 70224560 -51619296 + B1_Mus1 SINE Alu 1 147 -1 4 1120 417 39 0 0 chr11 70224841 70224892 -51618964 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1120 1184 91 6 6 chr11 70224947 70225096 -51618760 + B2_Mm1a SINE B2 1 160 -33 4 1120 321 26 0 0 chr11 70225106 70225144 -51618712 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1120 686 287 12 6 chr11 70225150 70225301 -51618555 - ID_B1 SINE B4 -58 166 9 4 1120 288 0 0 0 chr11 70225336 70225368 -51618488 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1120 365 67 0 32 chr11 70225368 70225429 -51618427 + (CAGAGA)n Simple_repeat Simple_repeat 3 62 0 4 1120 313 242 47 112 chr11 70225442 70225512 -51618344 - PB1D9 SINE Alu 0 120 58 4 1120 447 217 11 0 chr11 70225512 70225604 -51618252 + RLTR24 LTR ERV1 1 93 -436 4 1120 302 274 31 10 chr11 70225940 70226036 -51617820 - B1F1 SINE Alu -51 98 1 4 1120 350 334 18 62 chr11 70226332 70226642 -51617214 - L1M1 LINE L1 -573 5727 5431 4 1120 432 0 0 0 chr11 70226651 70226699 -51617157 + (TGG)n Simple_repeat Simple_repeat 3 50 0 4 1120 261 75 0 0 chr11 70226708 70226748 -51617108 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1120 364 303 89 16 chr11 70226748 70226872 -51616984 - ID_B1 SINE B4 -12 212 80 4 1120 231 254 0 0 chr11 70226875 70226934 -51616922 - L1M1 LINE L1 -759 5425 5367 4 1120 543 101 0 0 chr11 70226962 70227041 -51616815 + (TTC)n Simple_repeat Simple_repeat 3 81 0 4 1120 2188 237 62 9 chr11 70227058 70227594 -51616262 - Lx6 LINE L1 -28 7432 6869 4 1120 528 234 96 10 chr11 70227599 70227763 -51616093 - B3 SINE B2 -14 202 2 4 1120 584 183 29 0 chr11 70227873 70227977 -51615879 - B1_Mur1 SINE Alu -1 148 42 4 1120 194 31 0 59 chr11 70227980 70227991 -51615865 + (TTTG)n Simple_repeat Simple_repeat 2 12 0 5 1120 359 39 39 0 chr11 70227991 70228043 -51615813 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1120 194 31 0 59 chr11 70228043 70228065 -51615791 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1120 992 47 124 0 chr11 70228066 70228195 -51615661 - B1_Mm SINE Alu -1 146 2 5 1120 291 259 0 0 chr11 70228195 70228249 -51615607 - B1_Mus2 SINE Alu -93 54 1 5 1120 360 266 164 117 chr11 70228362 70228618 -51615238 - B4A SINE B4 -21 271 4 5 1120 417 279 57 72 chr11 70228632 70228681 -51615175 - B2_Mm2 SINE B2 0 195 147 5 1120 323 23 23 0 chr11 70228681 70228725 -51615131 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 5 1120 522 279 57 72 chr11 70228725 70228868 -51614988 - B3A SINE B2 -49 146 6 5 1120 336 340 0 0 chr11 70228923 70229029 -51614827 + PB1 SINE Alu 11 116 -11 5 1120 1306 199 160 95 chr11 70229143 70229627 -51614229 - MT2A LTR ERVL -21 512 87 5 1120 812 111 8 53 chr11 70229570 70229703 -51614153 + B1_Mus1 SINE Alu 22 148 0 5 1120 734 126 27 0 chr11 70229735 70229846 -51614010 - MT2A LTR ERVL -419 114 1 5 1120 463 149 181 0 chr11 70229846 70229940 -51613916 + PB1D9 SINE Alu 9 119 -1 5 1120 460 162 10 20 chr11 70229965 70230066 -51613790 + CT-rich Low_complexity Low_complexity 2 101 0 5 1120 235 294 0 42 chr11 70230067 70230138 -51613718 + RLTR25A LTR ERVK 505 572 -531 5 1120 726 71 10 0 chr11 70230088 70230186 -51613670 + B1_Mus2 SINE Alu 49 147 0 5 1120 201 108 0 0 chr11 70230189 70230226 -51613630 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1120 1139 82 0 0 chr11 70230453 70230600 -51613256 + B1_Mus1 SINE Alu 2 148 0 5 1120 189 0 0 0 chr11 70230795 70230816 -51613040 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 1120 204 211 0 0 chr11 70230896 70230948 -51612908 + T-rich Low_complexity Low_complexity 2 53 0 5 1120 1015 93 65 0 chr11 70230950 70231089 -51612767 - B1_Mus1 SINE Alu 0 148 1 5 1120 289 250 37 74 chr11 70231200 70231223 -51612633 - PB1D9 SINE Alu -16 104 81 5 1120 891 184 257 70 chr11 70231223 70231538 -51612318 - ORR1D1 LTR MaLR 0 374 1 5 1120 340 247 0 83 chr11 70231538 70231622 -51612234 - PB1D10 SINE Alu -40 77 1 5 1120 257 300 14 28 chr11 70231558 70231630 -51612226 - B4A SINE B4 -145 147 77 5 1120 1368 86 21 0 chr11 70231634 70231820 -51612036 - B2_Mm2 SINE B2 -5 190 1 5 1120 201 74 0 0 chr11 70231982 70232009 -51611847 + (AGGGGG)n Simple_repeat Simple_repeat 6 32 0 5 1120 1811 151 168 60 chr11 70232090 70232470 -51611386 - MTC LTR MaLR 0 421 1 5 1120 342 243 74 158 chr11 70232534 70232580 -51611276 - LTR73 LTR ERV1 -110 462 421 5 1120 874 172 14 0 chr11 70232580 70232725 -51611131 + B1_Mur2 SINE Alu 1 147 -2 5 1120 645 14 0 0 chr11 70232730 70232804 -51611052 + (TTC)n Simple_repeat Simple_repeat 1 74 0 5 1120 342 243 74 158 chr11 70232804 70232966 -51610890 - LTR73 LTR ERV1 -152 420 266 5 1120 29 98 0 0 chr11 70233486 70233578 -51610278 + AT_rich Low_complexity Low_complexity 1 92 0 5 1120 618 297 48 0 chr11 70233632 70233797 -51610059 - B3A SINE B2 -25 173 1 5 1120 862 71 0 0 chr11 70233914 70234026 -51609830 - B1_Mus1 SINE Alu 0 148 37 5 1120 370 254 64 43 chr11 70234047 70234187 -51609669 - LTR73 LTR ERV1 -400 172 30 5 1120 767 271 69 102 chr11 70234387 70234810 -51609046 - RLTR23 LTR ERV1 -16 414 6 5 1120 1432 202 93 39 chr11 70235018 70235373 -51608483 - ORR1D1 LTR MaLR 0 374 1 5 1120 242 292 10 92 chr11 70235585 70235683 -51608173 + MT2B2 LTR ERVL 167 256 -328 5 1120 558 360 22 19 chr11 70236208 70236520 -51607336 - MER65-int LTR ERV1 -64 4807 4495 5 1120 2638 71 3 0 chr11 70236549 70236875 -51606981 + ORR1A2 LTR MaLR 1 327 0 5 1120 2004 148 24 75 chr11 70237006 70237379 -51606477 + ORR1B1 LTR MaLR 41 394 0 5 1120 661 227 58 24 chr11 70238066 70238274 -51605582 + B3 SINE B2 2 216 0 5 1120 1296 94 11 0 chr11 70238281 70238462 -51605394 - B2_Mm1t SINE B2 -10 183 1 5 1120 241 164 62 62 chr11 70238655 70238720 -51605136 + Lx7 LINE L1 6946 7010 -686 5 1120 261 211 35 0 chr11 70238731 70238788 -51605068 + RMER15 LTR ERVL 2 60 -515 5 1120 1234 79 95 6 chr11 70238800 70238979 -51604877 + B2_Mm2 SINE B2 1 195 0 5 1120 684 190 0 62 chr11 70238992 70239121 -51604735 + B1_Mur1 SINE Alu 2 122 -27 5 1120 714 133 0 0 chr11 70239122 70239227 -51604629 + Lx4A LINE L1 6831 6935 -123 5 1120 376 96 0 0 chr11 70239231 70239283 -51604573 - PB1D9 SINE Alu -67 53 2 5 1120 520 218 40 119 chr11 70239315 70239466 -51604390 + RMER15 LTR ERVL 422 560 -15 5 1120 234 74 36 18 chr11 70239520 70239575 -51604281 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 5 1120 815 31 0 0 chr11 70239587 70239684 -51604172 - B1_Mm SINE Alu 0 147 51 5 1120 287 230 65 39 chr11 70239630 70239707 -51604149 - RLTR25B LTR ERVK -519 509 431 5 1120 327 164 0 0 chr11 70239725 70239786 -51604070 + A-rich Low_complexity Low_complexity 1 61 0 5 1120 1074 91 28 14 chr11 70239802 70239947 -51603909 + B1_Mus1 SINE Alu 2 148 0 5 1120 300 244 63 19 chr11 70240601 70240760 -51603096 + L1MD LINE L1 5268 5433 -926 5 1120 708 262 133 17 chr11 70240767 70241008 -51602848 + B4 SINE B4 1 269 -23 5 1120 441 0 0 0 chr11 70241008 70241057 -51602799 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1120 525 293 153 51 chr11 70241077 70241469 -51602387 + L1_Rod LINE L1 5377 5808 -39 5 1120 309 155 63 101 chr11 70241469 70241548 -51602308 - URR1B DNA MER1_type 0 225 150 5 1120 672 48 0 0 chr11 70241548 70241632 -51602224 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 5 1120 968 113 86 0 chr11 70241645 70241796 -51602060 - B2_Mm2 SINE B2 -31 164 1 5 1120 895 183 20 0 chr11 70241796 70241947 -51601909 - URR1B DNA MER1_type -70 155 2 5 1120 253 284 47 99 chr11 70241798 70241970 -51601886 + CYRA11_Mm Unknown Y-chromosome 250 412 -205 5 1120 459 155 27 18 chr11 70242006 70242118 -51601738 + (TATG)n Simple_repeat Simple_repeat 2 114 0 5 1120 267 258 41 8 chr11 70243099 70243112 -51600744 + ORR1B1-int LTR MaLR 630 646 -863 5 1120 710 189 0 0 chr11 70243112 70243223 -51600633 + B1_Mus1 SINE Alu 1 111 -37 5 1120 282 198 59 148 chr11 70243153 70243236 -51600620 + RLTR25B LTR ERVK 442 515 -513 5 1120 453 310 25 82 chr11 70243236 70243394 -51600462 + MTE2b LTR MaLR 1 149 -230 5 1120 452 256 0 208 chr11 70243422 70243614 -51600242 - RSINE1 SINE B4 0 165 14 5 1120 403 274 10 10 chr11 70243720 70243823 -51600033 - ID_B1 SINE B4 -9 215 113 5 1120 633 244 92 22 chr11 70243835 70244019 -51599837 - B3 SINE B2 -19 197 1 5 1120 255 303 42 84 chr11 70243961 70244080 -51599776 - ZP3AR Satellite Satellite -56 156 43 5 1120 506 138 0 0 chr11 70244211 70244291 -51599565 + PB1D9 SINE Alu 38 117 -3 5 1120 931 216 66 20 chr11 70244295 70244493 -51599363 + B3 SINE B2 1 207 -9 5 1120 241 296 19 0 chr11 70244955 70245009 -51598847 + ID4_ SINE ID 3 57 -26 5 1120 315 0 0 0 chr11 70245550 70245585 -51598271 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1120 217 341 11 56 chr11 70248152 70248242 -51595614 + MIR SINE MIR 12 97 -165 5 1120 510 274 44 0 chr11 70248537 70248672 -51595184 + B1_Mur1 SINE Alu 3 143 -6 5 1120 438 65 0 0 chr11 70250892 70250954 -51592902 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1120 396 295 101 65 chr11 70252352 70252628 -51591228 - L2a LINE L2 -39 3387 3102 5 17 2172 163 39 70 chr11 70254565 70254898 -51588958 - MTC LTR MaLR -1 420 97 5 1121 1486 68 16 0 chr11 70254898 70255089 -51588767 - B2_Mm2 SINE B2 -1 194 1 5 1121 2172 163 39 70 chr11 70255089 70255129 -51588727 - MTC LTR MaLR -325 96 70 5 1121 2188 78 140 0 chr11 70255129 70255437 -51588419 - Lx3_Mus LINE L1 0 7009 6659 5 1121 2172 163 39 70 chr11 70255437 70255478 -51588378 - MTC LTR MaLR -352 69 18 5 1121 369 0 0 0 chr11 70256479 70256520 -51587336 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 5 1121 744 226 41 67 chr11 70256601 70256795 -51587061 + B3A SINE B2 5 193 -5 5 1121 1227 88 27 16 chr11 70256838 70257022 -51586834 - B2_Mm2 SINE B2 0 195 10 5 1121 562 259 69 0 chr11 70257314 70257445 -51586411 + B1F2 SINE Alu 3 142 -7 5 1121 535 213 110 2 chr11 70257454 70257580 -51586276 + PB1D9 SINE Alu 11 148 -1 5 1121 242 232 53 80 chr11 70257600 70257675 -51586181 + ID4_ SINE ID 2 74 -9 5 1121 1116 101 50 2 chr11 70257803 70257987 -51585869 - B2_Mm2 SINE B2 -2 196 1 5 1121 184 303 48 57 chr11 70258396 70258501 -51585355 - L2b LINE L2 0 3375 3272 5 1121 216 327 18 0 chr11 70258750 70258805 -51585051 + ID4 SINE ID 14 69 -14 5 1121 218 95 24 0 chr11 70258886 70258928 -51584928 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1121 821 209 0 26 chr11 70258935 70259087 -51584769 - B1_Mur2 SINE Alu 0 149 2 5 1121 21 0 0 0 chr11 70259118 70259139 -51584717 + AT_rich Low_complexity Low_complexity 1 21 0 5 1121 267 79 0 0 chr11 70259250 70259288 -51584568 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1121 1138 55 0 53 chr11 70259290 70259442 -51584414 - B1_Mus1 SINE Alu -3 145 2 5 1121 225 239 22 0 chr11 70259575 70259621 -51584235 + G-rich Low_complexity Low_complexity 1 47 0 5 1121 240 268 118 49 chr11 70259631 70259733 -51584123 + RMER30 DNA MER1_type 92 200 -2 5 1121 396 278 142 21 chr11 70259839 70260078 -51583778 - HAL1 LINE L1 -353 2154 1887 5 1121 370 257 62 0 chr11 70260458 70260571 -51583285 - MER5A1 DNA MER1_type 0 166 47 5 1121 295 78 0 38 chr11 70260890 70260943 -51582913 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 5 1121 606 132 22 0 chr11 70261204 70261340 -51582516 + CT-rich Low_complexity Low_complexity 2 140 0 5 1121 369 62 0 0 chr11 70261343 70261391 -51582465 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1121 359 229 93 19 chr11 70261400 70261507 -51582349 - PB1D7 SINE Alu 0 120 6 6 1121 495 198 0 50 chr11 70261753 70261854 -51582002 - PB1 SINE Alu -20 107 12 6 1121 252 272 65 0 chr11 70261909 70262001 -51581855 - HAL1 LINE L1 -1594 913 816 5 1121 256 219 123 0 chr11 70262005 70262078 -51581778 + B1_Mus2 SINE Alu 1 82 -65 6 1121 216 239 26 66 chr11 70262125 70262201 -51581655 - B3A SINE B2 -123 75 3 6 1121 247 278 74 0 chr11 70262208 70262262 -51581594 - ID_B1 SINE B4 -4 220 163 6 1121 592 270 0 0 chr11 70262265 70262391 -51581465 - B1_Mur2 SINE Alu -22 127 2 6 1121 1186 62 0 14 chr11 70262425 70262573 -51581283 - B1_Mus1 SINE Alu -2 146 1 6 1121 1146 58 0 14 chr11 70262689 70262828 -51581028 + B1_Mus2 SINE Alu 5 141 -6 6 1121 234 0 0 0 chr11 70262830 70262856 -51581000 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1121 767 172 31 8 chr11 70262869 70262998 -51580858 + B1_Mur4 SINE Alu 1 132 -18 6 1121 1333 93 22 0 chr11 70263016 70263199 -51580657 - B2_Mm2 SINE B2 -8 187 1 6 1121 1290 96 112 0 chr11 70263396 70263593 -51580263 - Lx2 LINE L1 -1 6996 6778 6 1121 619 256 8 8 chr11 70263596 70263722 -51580134 - B3A SINE B2 -69 129 4 6 1121 887 238 24 9 chr11 70263966 70264178 -51579678 + B3 SINE B2 2 216 0 6 1121 1045 130 0 0 chr11 70264189 70264335 -51579521 + B1_Mur4 SINE Alu 5 150 0 6 1121 321 125 0 20 chr11 70264702 70264751 -51579105 + B1_Mus1 SINE Alu 8 55 -93 6 1121 207 69 0 0 chr11 70264983 70265012 -51578844 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 6 1121 278 175 88 0 chr11 70265205 70265262 -51578594 + PB1D9 SINE Alu 57 118 -2 6 1121 290 302 40 30 chr11 70266037 70266136 -51577720 + PB1D10 SINE Alu 13 112 -5 6 1121 260 0 57 0 chr11 70266190 70266225 -51577631 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 6 1121 486 230 10 39 chr11 70267046 70267150 -51576706 + PB1D7 SINE Alu 12 112 -8 6 1121 633 247 119 41 chr11 70267507 70267701 -51576155 - B3 SINE B2 -6 210 2 6 1121 259 288 0 33 chr11 70267800 70267861 -51575995 - ID SINE ID -142 82 24 6 1121 269 316 0 0 chr11 70267815 70267872 -51575984 - ID4_ SINE ID -15 68 12 6 1121 526 155 72 0 chr11 70267977 70268074 -51575782 + PB1D9 SINE Alu 17 120 0 6 1121 238 278 97 32 chr11 70268087 70268180 -51575676 + ID_B1 SINE B4 101 199 -25 6 1121 246 337 67 0 chr11 70268555 70268644 -51575212 + ID_B1 SINE B4 128 222 -2 6 1121 334 327 36 0 chr11 70268684 70268794 -51575062 + PB1D9 SINE Alu 4 117 -3 6 1121 531 0 0 0 chr11 70269626 70269685 -51574171 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1121 228 86 0 0 chr11 70269685 70269720 -51574136 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1121 293 213 105 13 chr11 70269749 70269825 -51574031 - MER34 LTR ERV1 -71 471 389 6 1121 840 170 14 7 chr11 70270606 70270748 -51573108 - B1_Mur3 SINE Alu -2 147 5 6 1121 1371 81 16 5 chr11 70270781 70270967 -51572889 + B2_Mm2 SINE B2 2 189 -6 6 1121 715 204 0 14 chr11 70271113 70271252 -51572604 + B1_Mur4 SINE Alu 1 137 -13 6 1121 751 209 0 29 chr11 70271374 70271512 -51572344 - B1_Mur4 SINE Alu 0 150 17 6 1121 294 299 9 27 chr11 70271596 70271706 -51572150 + ID_B1 SINE B4 69 176 -48 6 1121 418 240 0 10 chr11 70271631 70271728 -51572128 + PB1D10 SINE Alu 22 117 0 6 1121 1566 67 0 5 chr11 70271829 70272025 -51571831 + B2_Mm2 SINE B2 1 195 0 6 1121 189 0 0 0 chr11 70272851 70272872 -51570984 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 6 1121 207 167 0 0 chr11 70274398 70274440 -51569416 + GA-rich Low_complexity Low_complexity 2 43 0 6 1121 1138 190 14 9 chr11 70274857 70275070 -51568786 + B3 SINE B2 2 215 -1 6 1121 261 315 157 0 chr11 70275119 70275227 -51568629 + MER102b DNA MER1_type 209 333 -8 6 1121 525 162 110 37 chr11 70276460 70276569 -51567287 + PB1D10 SINE Alu 1 117 0 6 1121 424 224 206 8 chr11 70276570 70276692 -51567164 + ID_B1 SINE B4 83 223 -69 6 1121 196 315 152 38 chr11 70276694 70276826 -51567030 + MIRb SINE MIR 115 261 -7 6 1121 344 100 50 0 chr11 70278512 70278572 -51565284 + (GGGAGA)n Simple_repeat Simple_repeat 5 67 0 6 1121 326 266 13 0 chr11 70279230 70279309 -51564547 - RSINE1 SINE B4 -69 96 17 6 1121 438 250 123 14 chr11 70280301 70280439 -51563417 + RSINE1 SINE B4 5 157 -8 6 1121 433 231 0 21 chr11 70280483 70280576 -51563280 + B1F SINE Alu 1 91 -58 6 1121 480 233 19 10 chr11 70280594 70280698 -51563158 - RSINE1 SINE B4 -59 106 2 6 1121 422 274 54 0 chr11 70280797 70280905 -51562951 + B1F1 SINE Alu 1 114 -6 6 1121 846 222 40 0 chr11 70280924 70281122 -51562734 + B3 SINE B2 5 210 -6 6 1121 251 253 91 48 chr11 70281181 70281368 -51562488 - L1MC5 LINE L1 -435 7526 7332 6 1121 201 108 0 0 chr11 70281762 70281799 -51562057 + (C)n Simple_repeat Simple_repeat 1 37 0 6 1121 818 162 7 21 chr11 70282115 70282260 -51561596 + B1_Mur4 SINE Alu 1 143 -7 6 1121 273 338 52 19 chr11 70282440 70282594 -51561262 + MER58B DNA MER1_type 102 260 -81 6 1121 256 212 88 66 chr11 70282927 70283018 -51560838 + MTEa LTR MaLR 273 365 -14 6 1121 312 291 13 0 chr11 70283490 70283569 -51560287 + ID4 SINE ID 3 82 -1 6 1121 665 168 78 28 chr11 70283996 70284013 -51559843 - B1_Mur4 SINE Alu 0 150 125 6 1121 1216 68 0 0 chr11 70284013 70284160 -51559696 - B1_Mus1 SINE Alu 0 148 2 6 1121 825 117 0 0 chr11 70284160 70284288 -51559568 + (TTTC)n Simple_repeat Simple_repeat 4 131 0 6 1121 665 168 78 28 chr11 70284288 70284410 -51559446 - B1_Mur4 SINE Alu -26 124 4 6 1121 306 73 0 0 chr11 70284436 70284477 -51559379 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 6 1121 707 199 0 22 chr11 70284477 70284616 -51559240 - B1_Mur2 SINE Alu -11 138 3 6 1121 373 195 261 17 chr11 70284633 70284748 -51559108 - B1F SINE Alu -1 148 6 6 1121 1441 71 5 16 chr11 70284795 70284982 -51558874 - B2_Mm1t SINE B2 -7 186 2 6 1121 5541 71 4 14 chr11 70284989 70285707 -51558149 - L1Md_F2 LINE L1 -13 6569 5859 6 1121 281 271 197 11 chr11 70285755 70285938 -51557918 - L1MA5 LINE L1 -70 6230 6014 6 1121 1276 32 0 43 chr11 70285942 70286106 -51557750 - B2_Mm2 SINE B2 -31 164 8 6 1121 264 241 138 0 chr11 70286368 70286426 -51557430 - RSINE1 SINE B4 -96 69 4 6 1121 1682 36 0 0 chr11 70286711 70286903 -51556953 + B2_Mm1a SINE B2 2 193 0 6 1121 183 100 0 0 chr11 70287320 70287350 -51556506 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 6 1121 336 301 68 34 chr11 70287365 70287482 -51556374 - Lx6 LINE L1 -104 7356 7236 6 1121 541 253 205 4 chr11 70287481 70287573 -51556283 - L1MD LINE L1 -3309 2837 2724 6 1121 1064 215 14 14 chr11 70287573 70287785 -51556071 - B3 SINE B2 -4 212 1 6 1121 541 253 205 4 chr11 70287785 70287926 -51555930 - L1MD LINE L1 -3423 2723 2557 6 1121 1376 75 21 0 chr11 70288143 70288329 -51555527 - B2_Mm1t SINE B2 -2 191 2 6 1121 183 304 114 29 chr11 70288353 70288458 -51555398 - MIRc SINE MIR -108 160 47 6 1121 628 288 34 142 chr11 70288621 70288888 -51554968 - B4 SINE B4 -53 239 2 6 1121 182 119 0 45 chr11 70289015 70289059 -51554797 + (CAGCC)n Simple_repeat Simple_repeat 1 42 0 6 1121 391 252 48 8 chr11 70289571 70289695 -51554161 + L1MD LINE L1 2546 2674 -3472 6 1121 188 273 45 0 chr11 70289776 70289820 -51554036 + MIRm SINE MIR 93 138 -138 6 1121 1379 102 16 0 chr11 70289850 70290037 -51553819 + B2_Mm2 SINE B2 2 191 -4 6 1121 1183 68 0 0 chr11 70290042 70290189 -51553667 + B1_Mus2 SINE Alu 1 147 0 6 1121 368 88 18 0 chr11 70290191 70290248 -51553608 + (GAA)n Simple_repeat Simple_repeat 2 59 0 6 1121 731 364 106 32 chr11 70290284 70291070 -51552786 + L2 LINE L2 316 1159 -2260 6 1121 234 0 0 0 chr11 70291105 70291131 -51552725 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1121 767 139 46 15 chr11 70291131 70291262 -51552594 - B1_Mur4 SINE Alu -1 149 15 6 1121 331 222 23 188 chr11 70291165 70291298 -51552558 - MT2B LTR ERVL -337 264 154 6 1121 420 274 125 59 chr11 70291295 70291431 -51552425 - ID_B1 SINE B4 -2 222 78 6 1121 667 247 7 0 chr11 70291486 70291632 -51552224 + B1F SINE Alu 3 149 0 6 1121 498 128 200 52 chr11 70291650 70291765 -51552091 + B3 SINE B2 84 215 -1 6 1121 485 276 19 82 chr11 70291788 70291946 -51551910 + B4A SINE B4 2 149 -143 6 1121 405 0 0 0 chr11 70292041 70292086 -51551770 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1121 261 86 52 0 chr11 70292086 70292144 -51551712 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 6 1121 3750 253 134 66 chr11 70292220 70293388 -51550468 - Lx8 LINE L1 -1 7472 6175 6 1121 690 258 100 0 chr11 70293388 70293578 -51550278 - B3 SINE B2 -6 210 2 6 1121 3750 253 134 66 chr11 70293578 70293968 -51549888 - Lx8 LINE L1 -1299 6174 5808 6 1121 471 265 86 91 chr11 70293972 70294159 -51549697 - B3A SINE B2 0 198 13 6 1121 283 304 60 43 chr11 70294287 70294404 -51549452 + RMER15 LTR ERVL 394 512 -63 6 1121 1306 72 66 6 chr11 70294850 70295009 -51548847 + B2_Mm1a SINE B2 1 160 -33 6 1121 397 18 17 34 chr11 70295009 70295068 -51548788 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 6 1121 1306 72 66 6 chr11 70295068 70295089 -51548767 + B2_Mm1a SINE B2 161 192 -1 6 1121 1484 78 5 0 chr11 70295300 70295492 -51548364 - B2_Mm1a SINE B2 0 193 1 7 1121 1346 158 162 82 chr11 70295548 70295900 -51547956 + RLTR14 LTR ERV1 3 382 0 7 1121 314 306 101 10 chr11 70296033 70296132 -51547724 - PB1D10 SINE Alu 0 117 10 7 1121 228 86 0 0 chr11 70296152 70296187 -51547669 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1121 591 198 17 17 chr11 70296805 70296923 -51546933 - PB1D9 SINE Alu 0 120 3 7 1121 879 283 22 0 chr11 70296925 70297151 -51546705 - B4A SINE B4 -61 231 1 7 1121 376 294 18 0 chr11 70297155 70297264 -51546592 - ID_B1 SINE B4 0 224 114 7 1121 893 177 0 33 chr11 70297508 70297660 -51546196 + B1_Mur4 SINE Alu 4 150 0 7 1121 1465 66 6 0 chr11 70297744 70297927 -51545929 + B2_Mm1a SINE B2 1 184 -9 7 1121 186 43 0 0 chr11 70297930 70297953 -51545903 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1121 677 206 37 0 chr11 70297978 70298114 -51545742 + B1_Mm SINE Alu 7 147 0 7 1121 343 229 14 0 chr11 70298122 70298192 -51545664 + ID4 SINE ID 2 72 -11 7 1121 228 231 211 0 chr11 70298508 70298560 -51545296 + B1_Mur2 SINE Alu 73 135 -14 7 1121 871 158 58 0 chr11 70298572 70298711 -51545145 + B1_Mur2 SINE Alu 1 147 -2 7 1121 999 216 19 9 chr11 70298719 70298929 -51544927 + B3 SINE B2 5 216 0 7 1121 273 263 0 66 chr11 70299057 70299118 -51544738 - ID4_ SINE ID -4 79 23 7 1121 528 231 146 0 chr11 70299159 70299289 -51544567 - B1_Mur2 SINE Alu 0 149 1 7 1121 676 256 74 26 chr11 70299309 70299498 -51544358 - B3A SINE B2 0 198 1 7 1121 545 143 30 10 chr11 70299691 70299790 -51544066 + B2_Mm2 SINE B2 95 195 0 7 1121 785 304 125 44 chr11 70301289 70301650 -51542206 + MLT1B LTR MaLR 1 390 0 7 1121 434 206 0 0 chr11 70303076 70303149 -51540707 + PB1D10 SINE Alu 29 101 -16 7 1121 196 238 0 130 chr11 70303205 70303297 -51540559 + L2 LINE L2 2887 2966 -453 7 1121 24 0 0 0 chr11 70303520 70303544 -51540312 + AT_rich Low_complexity Low_complexity 1 24 0 7 1121 3116 123 26 36 chr11 70303689 70304219 -51539637 - RLTR11A2 LTR ERVK -1 526 2 7 1121 390 21 0 0 chr11 70304498 70304545 -51539311 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1121 597 291 49 6 chr11 70304826 70305009 -51538847 - Lx7 LINE L1 -616 7080 6890 7 1121 186 71 0 0 chr11 70305021 70305049 -51538807 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 7 1121 227 333 0 53 chr11 70305092 70305168 -51538688 - B1F2 SINE Alu -63 86 15 7 1121 349 336 43 17 chr11 70305164 70305279 -51538577 - B4A SINE B4 -170 122 5 7 1121 514 242 76 23 chr11 70305380 70305511 -51538345 - RSINE1 SINE B4 0 165 28 7 1121 1273 88 0 32 chr11 70305507 70305696 -51538160 - B2_Mm2 SINE B2 -5 190 8 7 1121 2119 185 21 40 chr11 70305818 70306245 -51537611 - MTD LTR MaLR 0 419 1 7 1121 255 309 0 0 chr11 70306291 70306359 -51537497 - ID4_ SINE ID -13 70 3 7 1121 1240 34 7 0 chr11 70306380 70306526 -51537330 + B1_Mm SINE Alu 1 147 0 7 1121 1434 71 22 0 chr11 70306611 70306794 -51537062 - B2_Mm2 SINE B2 -8 187 1 7 1121 28 0 0 0 chr11 70306860 70306888 -51536968 + AT_rich Low_complexity Low_complexity 1 28 0 7 1121 762 234 147 11 chr11 70306942 70307132 -51536724 + B3 SINE B2 1 216 0 7 1121 936 220 55 0 chr11 70307149 70307349 -51536507 - B3 SINE B2 -3 213 3 7 1121 311 0 26 0 chr11 70307368 70307407 -51536449 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1121 750 117 0 0 chr11 70307407 70307526 -51536330 + (TG)n Simple_repeat Simple_repeat 1 120 0 7 1121 453 305 0 0 chr11 70307542 70307647 -51536209 + PB1 SINE Alu 12 116 -11 7 1121 270 0 0 0 chr11 70307665 70307695 -51536161 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1121 288 0 0 0 chr11 70307695 70307726 -51536130 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1121 189 196 0 0 chr11 70307745 70307801 -51536055 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1121 807 214 65 15 chr11 70307845 70308044 -51535812 - L1MC1 LINE L1 -100 6233 6025 7 1121 1032 197 39 5 chr11 70308058 70308262 -51535594 + B3 SINE B2 3 213 -3 7 1121 299 290 146 19 chr11 70308289 70308447 -51535409 - L1MC1 LINE L1 -325 6008 5831 7 1121 416 190 0 25 chr11 70308511 70308592 -51535264 + MTE-int LTR MaLR 1420 1498 -82 7 1121 491 243 10 10 chr11 70308599 70308703 -51535153 + ORR1E LTR MaLR 3 106 -253 7 1121 951 161 47 12 chr11 70308769 70308939 -51534917 - B2_Mm2 SINE B2 -19 176 1 7 1121 2255 218 35 59 chr11 70308940 70309481 -51534375 - MT2A LTR ERVL -5 528 1 7 1121 394 261 89 47 chr11 70309698 70309867 -51533989 - L1MC1 LINE L1 -574 5759 5584 7 1121 489 189 105 0 chr11 70309876 70309971 -51533885 + B1_Mur3 SINE Alu 1 105 -44 7 1121 1362 85 26 5 chr11 70310037 70310227 -51533629 + B2_Mm2 SINE B2 2 195 0 7 1121 829 138 14 21 chr11 70310364 70310505 -51533351 - B1_Mus1 SINE Alu -1 147 8 7 1121 286 302 19 115 chr11 70310552 70310674 -51533182 - B1F SINE Alu -7 110 2 7 1121 366 80 0 0 chr11 70310744 70310794 -51533062 + (TTA)n Simple_repeat Simple_repeat 2 51 0 7 1121 1337 90 11 0 chr11 70310869 70311046 -51532810 + B2_Mm1t SINE B2 1 179 -14 7 1121 360 89 316 26 chr11 70311083 70311197 -51532659 + B2_Mm2 SINE B2 47 193 -2 7 1121 393 221 20 50 chr11 70311661 70311761 -51532095 - B1_Mur1 SINE Alu 0 149 53 7 1121 1203 222 92 41 chr11 70311771 70312109 -51531747 - Lx5 LINE L1 0 7050 6696 7 1121 966 149 84 110 chr11 70312317 70312544 -51531312 + URR1B DNA MER1_type 1 221 -4 7 1121 807 178 98 23 chr11 70312761 70312934 -51530922 - B2_Mm2 SINE B2 -8 187 2 7 1121 324 0 0 0 chr11 70313284 70313320 -51530536 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1121 1050 252 57 25 chr11 70313402 70313683 -51530173 + B4 SINE B4 1 290 -2 7 1121 409 274 50 50 chr11 70313740 70313859 -51529997 + B1_Mm SINE Alu 3 121 -28 7 1121 624 281 54 82 chr11 70314386 70314665 -51529191 + B4 SINE B4 4 274 -18 7 1121 243 255 0 19 chr11 70315503 70315555 -51528301 - B1_Mur1 SINE Alu 0 149 99 7 1121 481 244 29 29 chr11 70315556 70315678 -51528178 - B1F SINE Alu -23 126 5 7 1121 683 192 251 17 chr11 70316210 70316385 -51527471 + B3 SINE B2 1 216 0 7 1121 325 339 0 9 chr11 70316409 70316525 -51527331 + PB1D10 SINE Alu 3 117 0 7 1121 506 207 0 254 chr11 70316802 70316858 -51526998 + B1_Mur1 SINE Alu 1 55 -94 7 1121 1242 48 0 0 chr11 70316858 70317004 -51526852 + B1_Mus2 SINE Alu 2 147 0 7 1121 506 207 0 254 chr11 70317004 70317128 -51526728 + B1_Mur1 SINE Alu 56 135 -14 7 1121 748 108 8 8 chr11 70317154 70317285 -51526571 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 7 1121 216 372 23 23 chr11 70317297 70317385 -51526471 + B3A SINE B2 93 180 -18 7 1121 1098 82 7 7 chr11 70317529 70317676 -51526180 + B1_Mm SINE Alu 1 147 0 7 1121 499 17 0 0 chr11 70317704 70317764 -51526092 - RLTR19C LTR ERVK -446 60 1 7 1121 1573 178 68 71 chr11 70317765 70317923 -51525933 - MTB_Mm LTR MaLR -57 350 191 7 1121 1140 51 0 0 chr11 70317923 70318060 -51525796 - B1_Mus1 SINE Alu -7 141 5 7 1121 1573 178 68 71 chr11 70318060 70318252 -51525604 - MTB_Mm LTR MaLR -217 190 1 7 1121 197 312 155 31 chr11 70318385 70318514 -51525342 - MIRc SINE MIR -13 255 111 7 1121 585 220 114 0 chr11 70319615 70319747 -51524109 + B1_Mus2 SINE Alu 1 147 0 7 1121 180 0 0 0 chr11 70320227 70320247 -51523609 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 1121 859 10 0 0 chr11 70320247 70320347 -51523509 - B2_Mm1t SINE B2 -93 100 1 7 1121 534 163 76 0 chr11 70320406 70320498 -51523358 - B1_Mur1 SINE Alu 0 149 51 7 1121 303 28 0 0 chr11 70320555 70320591 -51523265 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 7 1121 297 302 118 0 chr11 70320593 70320712 -51523144 - B1_Mm SINE Alu -14 133 1 7 1121 235 289 60 0 chr11 70320728 70320811 -51523045 - B1_Mur4 SINE Alu 0 150 63 7 1121 1309 116 21 0 chr11 70320931 70321120 -51522736 + B2_Mm2 SINE B2 2 194 -1 7 1121 216 132 26 0 chr11 70321122 70321160 -51522696 + B3A SINE B2 4 42 -156 7 1121 225 152 0 0 chr11 70321160 70321193 -51522663 + B1_Mus2 SINE Alu 2 34 -113 7 1121 274 246 0 15 chr11 70321172 70321238 -51522618 + B1F1 SINE Alu 85 149 0 7 1121 230 309 37 12 chr11 70321500 70321582 -51522274 + B1F2 SINE Alu 2 85 -64 7 1121 338 219 135 0 chr11 70321705 70321801 -51522055 + PB1D10 SINE Alu 1 109 -8 7 1121 271 271 41 20 chr11 70321828 70321926 -51521930 + BC1_Mm scRNA scRNA 2 101 -51 7 1121 377 186 0 0 chr11 70322065 70322124 -51521732 - B1F SINE Alu -18 131 73 7 1121 236 215 72 48 chr11 70322124 70322148 -51521708 - ID_B1 SINE B4 -18 206 122 7 1121 234 0 0 0 chr11 70324736 70324762 -51519094 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1121 261 0 0 0 chr11 70324762 70324790 -51519066 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1121 309 247 63 63 chr11 70324791 70324886 -51518970 - RSINE1 SINE B4 -52 113 19 7 1121 214 262 0 32 chr11 70325075 70325138 -51518718 + C-rich Low_complexity Low_complexity 1 61 0 7 1121 1228 41 0 0 chr11 70325243 70325389 -51518467 - B1_Mus2 SINE Alu 0 147 2 7 1121 2069 146 46 81 chr11 70325439 70325868 -51517988 + RMER10A LTR ERVL 3 412 -30 7 1121 1565 160 65 77 chr11 70325868 70326282 -51517574 - RMER17C LTR ERVK 0 410 2 7 1121 2069 146 46 81 chr11 70326282 70326308 -51517548 + RMER10A LTR ERVL 413 442 0 7 1121 221 333 208 0 chr11 70328336 70328456 -51515400 - MIRb SINE MIR -23 245 101 8 1121 225 0 0 0 chr11 70328776 70328801 -51515055 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1121 377 229 215 44 chr11 70328989 70329240 -51514616 + RNLTR23 LTR ERVK 349 642 0 8 1121 919 74 0 8 chr11 70329240 70329362 -51514494 - B1_Mus1 SINE Alu -26 122 2 8 1121 1722 111 191 3 chr11 70329369 70329667 -51514189 - MTC LTR MaLR -1 420 67 8 1121 1161 105 11 11 chr11 70329661 70329835 -51514021 - B2_Mm1t SINE B2 -3 190 17 8 1121 352 266 0 96 chr11 70329892 70329996 -51513860 - PB1D10 SINE Alu 0 117 24 8 1121 315 298 39 84 chr11 70330248 70330339 -51513517 + B1F1 SINE Alu 2 91 -58 8 1121 682 191 102 8 chr11 70330339 70330466 -51513390 + B1_Mur2 SINE Alu 5 143 -6 8 1121 315 298 39 84 chr11 70330466 70330528 -51513328 + B1F1 SINE Alu 92 148 -1 8 1121 1712 21 0 0 chr11 70330598 70330788 -51513068 + B2_Mm1a SINE B2 1 190 -3 8 1121 24 0 0 0 chr11 70330788 70330812 -51513044 + AT_rich Low_complexity Low_complexity 1 24 0 8 1121 202 208 82 20 chr11 70330917 70330966 -51512890 - L2b LINE L2 -84 3291 3240 8 1121 336 77 0 0 chr11 70331002 70331054 -51512802 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1121 340 243 29 0 chr11 70331054 70331124 -51512732 - ID4_ SINE ID -10 73 2 8 1121 22 35 0 0 chr11 70331124 70331153 -51512703 + AT_rich Low_complexity Low_complexity 1 29 0 8 1121 417 271 0 45 chr11 70331592 70331704 -51512152 - PB1D10 SINE Alu -10 107 1 8 1121 486 237 61 66 chr11 70331815 70331996 -51511860 - RLTR23 LTR ERV1 -7 423 244 8 1121 196 290 107 29 chr11 70332357 70332460 -51511396 - MIRb SINE MIR -18 250 140 8 1121 422 308 91 55 chr11 70334610 70334796 -51509060 + L2 LINE L2 2333 2519 -900 8 1121 207 0 0 0 chr11 70334796 70334819 -51509037 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1121 1009 68 68 0 chr11 70334823 70334956 -51508900 - B1_Mus1 SINE Alu -5 143 2 8 1121 422 308 91 55 chr11 70334956 70335039 -51508817 + L2 LINE L2 2520 2617 -802 8 1121 913 158 20 14 chr11 70335178 70335200 -51508656 - B1_Mur4 SINE Alu 0 150 128 8 1121 243 0 0 0 chr11 70335200 70335227 -51508629 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1121 913 158 20 14 chr11 70335227 70335352 -51508504 - B1_Mur4 SINE Alu -23 127 2 8 1121 472 263 83 109 chr11 70335382 70335472 -51508384 + ID_B1 SINE B4 1 93 -131 8 1121 696 165 26 0 chr11 70335472 70335587 -51508269 + PB1D9 SINE Alu 3 120 0 8 1121 472 263 83 109 chr11 70335587 70335726 -51508130 + ID_B1 SINE B4 94 224 0 8 1121 1320 86 0 70 chr11 70335728 70335929 -51507927 + B2_Mm2 SINE B2 1 187 -8 8 1121 296 294 38 89 chr11 70335936 70336093 -51507763 + B1F SINE Alu 1 149 0 8 1121 364 35 53 0 chr11 70336097 70336154 -51507702 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 8 1121 245 284 22 90 chr11 70336255 70336344 -51507512 + ID4 SINE ID 1 83 0 8 1121 251 208 21 0 chr11 70336514 70336562 -51507294 - RSINE1 SINE B4 -35 130 82 8 1121 333 71 0 0 chr11 70336664 70336706 -51507150 + B2_Mm2 SINE B2 1 42 -153 8 1121 690 92 208 0 chr11 70337016 70337136 -51506720 + B2_Mm2 SINE B2 37 181 -14 8 1121 1228 54 0 0 chr11 70337151 70337298 -51506558 - B1_Mus2 SINE Alu 0 147 1 8 1121 440 244 74 13 chr11 70337305 70337530 -51506326 + L1M4 LINE L1 5232 5475 -699 8 1121 4154 75 0 11 chr11 70337672 70338210 -51505646 - L1Md_F2 LINE L1 0 6582 6051 8 1121 371 232 11 34 chr11 70338458 70338547 -51505309 + RMER30 DNA MER1_type 5 91 -111 8 1121 839 233 152 27 chr11 70340279 70340535 -51503321 - B4A SINE B4 -4 288 1 8 1121 863 160 243 0 chr11 70341347 70341516 -51502340 - B3 SINE B2 -6 210 1 8 1121 438 276 29 0 chr11 70341530 70341635 -51502221 - PB1D7 SINE Alu 0 120 13 8 1121 532 236 67 40 chr11 70342357 70342373 -51501483 - MT2A LTR ERVL -379 154 1 8 1121 637 239 52 0 chr11 70342373 70342507 -51501349 - MTE2b LTR MaLR -238 141 1 8 1121 183 344 41 20 chr11 70342539 70342637 -51501219 + L2b LINE L2 2430 2529 -890 8 1121 473 227 114 30 chr11 70342780 70342912 -51500944 + B1_Mur1 SINE Alu 2 144 -5 8 1121 385 232 50 10 chr11 70343187 70343287 -51500569 - PB1D10 SINE Alu -13 104 1 8 1121 412 233 35 0 chr11 70343294 70343380 -51500476 - B1F SINE Alu -6 143 55 8 1121 243 246 13 40 chr11 70343483 70343559 -51500297 + L2b LINE L2 3081 3154 -221 8 1121 1454 59 21 0 chr11 70343574 70343761 -51500095 - B2_Mm1t SINE B2 -1 192 2 8 1121 888 212 117 52 chr11 70343985 70344120 -51499736 - Lx8 LINE L1 -4 7469 7326 8 1121 384 40 0 0 chr11 70344120 70344170 -51499686 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 8 1121 888 212 117 52 chr11 70344170 70344342 -51499514 - Lx8 LINE L1 -148 7325 7142 8 1121 773 125 8 16 chr11 70344391 70344513 -51499343 - B1_Mus1 SINE Alu -1 147 27 8 1121 242 277 193 21 chr11 70344513 70344653 -51499203 - Lx8 LINE L1 -323 7150 6987 8 1121 420 71 0 0 chr11 70344682 70344738 -51499118 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1121 257 235 20 0 chr11 70344744 70344795 -51499061 - RSINE1 SINE B4 -24 141 90 8 1121 1427 89 5 0 chr11 70344795 70344985 -51498871 - B2_Mm1a SINE B2 -1 192 2 8 1121 242 29 29 0 chr11 70345005 70345040 -51498816 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 8 1121 1112 57 50 0 chr11 70345041 70345181 -51498675 - B1_Mus2 SINE Alu 0 147 1 8 1121 495 244 20 88 chr11 70345233 70345381 -51498475 - B4A SINE B4 -153 139 2 8 1121 278 351 17 26 chr11 70346105 70346222 -51497634 + MER45A DNA Tip100 46 161 -17 8 1121 264 254 56 0 chr11 70346811 70346882 -51496974 - ID4 SINE ID -2 81 7 8 1121 532 218 9 26 chr11 70347041 70347154 -51496702 - PB1D7 SINE Alu -4 116 6 8 1121 257 331 14 84 chr11 70347070 70347212 -51496644 - MT2B2 LTR ERVL -339 245 114 8 1121 191 221 19 23 chr11 70347250 70347313 -51496543 - MIR SINE MIR -99 177 109 8 1121 315 71 0 0 chr11 70347428 70347470 -51496386 + (GTTTG)n Simple_repeat Simple_repeat 5 46 0 8 1121 1171 83 0 0 chr11 70347471 70347616 -51496240 - B1_Mus1 SINE Alu -2 146 2 8 1121 422 302 8 8 chr11 70347620 70347740 -51496116 - ID_B1 SINE B4 -23 201 82 8 1121 1997 109 86 3 chr11 70347742 70348046 -51495810 - ORR1A4 LTR MaLR 0 329 1 8 1121 341 286 24 97 chr11 70348075 70348199 -51495657 + B1F2 SINE Alu 1 115 -5 8 1121 958 168 147 9 chr11 70348229 70348440 -51495416 + MTD LTR MaLR 44 283 -136 8 1121 634 154 169 8 chr11 70348487 70348611 -51495245 - B1_Mur2 SINE Alu 0 149 6 8 1121 282 240 159 53 chr11 70348523 70348655 -51495201 - MT2B LTR ERVL -337 264 119 8 1121 360 64 0 0 chr11 70348740 70348787 -51495069 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1121 515 280 3 204 chr11 70348795 70348914 -51494942 - B4A SINE B4 -1 291 188 8 1121 583 270 0 26 chr11 70348914 70349066 -51494790 - RSINE1 SINE B4 -16 149 2 8 1121 515 280 3 204 chr11 70349066 70349309 -51494547 - B4A SINE B4 -105 187 2 8 1121 374 253 103 23 chr11 70349309 70349483 -51494373 - L1ME2 LINE L1 -112 6052 5865 8 1121 797 210 49 41 chr11 70349517 70349760 -51494096 - L1MB7 LINE L1 -16 6168 5924 8 1121 297 192 25 88 chr11 70349973 70350024 -51493832 + MTEa LTR MaLR 2 50 -329 8 1121 820 277 14 18 chr11 70350024 70350241 -51493615 + B3 SINE B2 1 216 0 8 1121 297 192 25 88 chr11 70350241 70350258 -51493598 + MTEa LTR MaLR 51 65 -314 8 1121 530 275 0 0 chr11 70350258 70350367 -51493489 + B1_Mus2 SINE Alu 1 109 -38 8 1121 414 0 0 0 chr11 70350371 70350417 -51493439 + (CAA)n Simple_repeat Simple_repeat 2 47 0 8 1121 367 251 80 59 chr11 70350461 70350594 -51493262 - PB1D7 SINE Alu -6 144 1 8 1121 619 300 111 48 chr11 70350595 70350809 -51493047 + MTEa LTR MaLR 85 304 -75 8 1121 261 0 0 0 chr11 70350809 70350838 -51493018 + (CTAA)n Simple_repeat Simple_repeat 4 32 0 8 1121 336 48 0 0 chr11 70350839 70350881 -51492975 + (CATA)n Simple_repeat Simple_repeat 3 44 0 8 1121 619 300 111 48 chr11 70350881 70350934 -51492922 + MTEa LTR MaLR 305 366 -13 8 1121 384 298 72 20 chr11 70350945 70351114 -51492742 - L1MB7 LINE L1 -265 5919 5739 8 1121 840 185 13 27 chr11 70351114 70351264 -51492592 - B1_Mus1 SINE Alu 0 148 1 8 1121 384 298 72 20 chr11 70351264 70351344 -51492512 - L1MB7 LINE L1 -446 5738 5657 8 1121 631 186 24 207 chr11 70351357 70351442 -51492414 - B1_Mus1 SINE Alu -10 138 66 8 1121 1045 237 24 0 chr11 70351442 70351653 -51492203 + B3 SINE B2 1 216 0 8 1121 631 186 24 207 chr11 70351653 70351736 -51492120 - B1_Mus1 SINE Alu -83 65 1 8 1121 441 188 11 34 chr11 70351783 70351871 -51491985 + B1_Mur1 SINE Alu 38 123 -26 8 1121 1188 70 0 0 chr11 70351873 70352030 -51491826 - URR1A DNA MER1_type 0 226 70 8 1121 431 332 91 45 chr11 70352102 70352150 -51491706 + L1M5 LINE L1 5321 5385 -779 8 1121 2586 44 25 3 chr11 70352150 70352470 -51491386 + ORR1A2 LTR MaLR 1 327 0 8 1121 431 332 91 45 chr11 70352470 70352664 -51491192 + L1M5 LINE L1 5386 5574 -590 8 1121 556 168 340 6 chr11 70352686 70352848 -51491008 - B3 SINE B2 0 216 1 8 1121 220 302 98 54 chr11 70352852 70352964 -51490892 - PB1D7 SINE Alu -1 119 3 8 1121 511 218 34 13 chr11 70352982 70353131 -51490725 + L1M5 LINE L1 5596 5747 -432 8 1121 22 0 0 0 chr11 70353486 70353508 -51490348 + GC_rich Low_complexity Low_complexity 1 22 0 8 1121 199 54 54 0 chr11 70355212 70355249 -51488607 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 8 1121 1413 64 37 11 chr11 70355612 70355801 -51488055 - B2_Mm2 SINE B2 0 195 2 8 1121 659 217 23 0 chr11 70355829 70355958 -51487898 - B1_Mur1 SINE Alu -13 136 5 8 1121 579 267 0 44 chr11 70356857 70356994 -51486862 + B3A SINE B2 40 170 -28 8 1121 468 77 0 0 chr11 70356996 70357061 -51486795 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1121 272 330 57 19 chr11 70357084 70357189 -51486667 + PB1D10 SINE Alu 1 109 -8 8 1121 952 127 0 15 chr11 70357196 70357332 -51486524 + B1_Mur4 SINE Alu 2 135 -15 8 1121 225 196 0 0 chr11 70357346 70357397 -51486459 + GA-rich Low_complexity Low_complexity 1 51 0 8 1121 199 310 141 41 chr11 70357414 70357535 -51486321 - L2a LINE L2 0 3426 3294 8 1121 315 71 0 0 chr11 70358644 70358686 -51485170 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1121 1030 202 31 15 chr11 70358693 70358889 -51484967 - B3 SINE B2 -17 199 1 8 1121 865 254 23 32 chr11 70358889 70359105 -51484751 - B4A SINE B4 -64 228 15 9 1121 257 325 0 36 chr11 70359031 70359114 -51484742 - BC1_Mm scRNA scRNA -67 85 6 9 1121 1182 115 98 0 chr11 70359119 70359136 -51484720 - B2_Mm2 SINE B2 -3 192 159 9 1121 351 0 0 0 chr11 70359136 70359175 -51484681 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 9 1121 1182 115 98 0 chr11 70359175 70359331 -51484525 - B2_Mm2 SINE B2 -37 158 3 9 1121 453 129 32 0 chr11 70359356 70359449 -51484407 + (TG)n Simple_repeat Simple_repeat 1 96 0 9 1121 577 290 23 158 chr11 70359453 70359539 -51484317 - B4A SINE B4 -4 288 221 9 1121 966 211 37 46 chr11 70359539 70359757 -51484099 - B3 SINE B2 0 216 1 9 1121 577 290 23 158 chr11 70359757 70359891 -51483965 - B4A SINE B4 -72 220 98 9 1121 252 0 0 0 chr11 70359897 70359925 -51483931 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1121 630 145 50 17 chr11 70359936 70360055 -51483801 - B1F2 SINE Alu -26 123 1 9 1121 742 281 53 21 chr11 70360055 70360141 -51483715 - B4A SINE B4 -199 93 2 9 1121 520 246 87 16 chr11 70360284 70360449 -51483407 - ID_B1 SINE B4 -53 239 72 9 1121 547 241 15 22 chr11 70360452 70360588 -51483268 - B1F2 SINE Alu -13 136 2 9 1121 417 321 18 0 chr11 70360589 70360701 -51483155 - PB1D10 SINE Alu -3 114 1 9 1121 1036 114 15 97 chr11 70360712 70360907 -51482949 - B2_Mm2 SINE B2 -15 180 2 9 1121 264 309 177 33 chr11 70360931 70361112 -51482744 - MIRb SINE MIR 0 268 62 9 1121 291 239 14 40 chr11 70361176 70361250 -51482606 + ID4 SINE ID 9 80 -3 9 1121 443 256 103 22 chr11 70361279 70361415 -51482441 + B1F1 SINE Alu 1 147 -2 9 1121 203 189 0 0 chr11 70361612 70361649 -51482207 + T-rich Low_complexity Low_complexity 5 41 0 9 1121 932 208 34 10 chr11 70361658 70361867 -51481989 - Lx3B LINE L1 -2 6971 6758 9 1121 564 262 42 7 chr11 70361976 70362118 -51481738 + RSINE1 SINE B4 4 150 -15 9 1121 1218 68 0 0 chr11 70362158 70362306 -51481550 + B1_Mus1 SINE Alu 1 148 0 9 1121 26 30 0 0 chr11 70362306 70362339 -51481517 + AT_rich Low_complexity Low_complexity 1 33 0 9 1121 639 225 36 7 chr11 70362343 70362482 -51481374 + B1_Mur1 SINE Alu 2 144 -5 9 1121 294 300 25 0 chr11 70362542 70362622 -51481234 + ID4 SINE ID 1 82 -1 9 1121 461 222 81 0 chr11 70362700 70362799 -51481057 + PB1D10 SINE Alu 3 109 -8 9 1121 504 299 0 0 chr11 70362908 70363025 -51480831 - PB1D7 SINE Alu -2 118 2 9 1121 956 150 7 20 chr11 70363069 70363219 -51480637 - B1_Mur4 SINE Alu 0 150 3 9 1121 556 206 90 62 chr11 70363236 70363381 -51480475 + B1_Mur2 SINE Alu 1 149 0 9 1121 309 169 24 12 chr11 70363424 70363508 -51480348 + (TA)n Simple_repeat Simple_repeat 2 86 0 9 1121 568 184 92 73 chr11 70363535 70363639 -51480217 - B2_Mm1t SINE B2 -2 191 93 9 1121 450 0 0 0 chr11 70363639 70363689 -51480167 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 9 1121 1310 45 0 0 chr11 70363689 70363846 -51480010 - B2_Mm1a SINE B2 -35 158 2 9 1121 1166 82 7 0 chr11 70363849 70363996 -51479860 - B1_Mus1 SINE Alu 0 148 1 9 1121 810 223 0 7 chr11 70363999 70364148 -51479708 - B1_Mur1 SINE Alu 0 149 2 9 1121 357 243 122 37 chr11 70364151 70364258 -51479598 - PB1D10 SINE Alu 0 117 2 9 1121 309 26 0 0 chr11 70364995 70365033 -51478823 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1121 538 215 156 8 chr11 70365325 70365447 -51478409 - B1F2 SINE Alu -8 141 2 9 1121 339 321 57 50 chr11 70365520 70365661 -51478195 + B1F SINE Alu 5 146 -3 9 1121 581 185 37 9 chr11 70366474 70366583 -51477273 + PB1D7 SINE Alu 9 120 0 9 1121 657 66 0 0 chr11 70366597 70366688 -51477168 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 9 1121 2466 132 63 5 chr11 70367092 70367488 -51476368 - MTC LTR MaLR 0 421 3 9 1121 253 0 0 51 chr11 70367688 70367727 -51476129 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 9 1121 459 0 0 0 chr11 70367914 70367965 -51475891 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 9 1121 1479 60 22 0 chr11 70369715 70369899 -51473957 - B2_Mm2 SINE B2 -7 188 1 9 1121 527 254 9 0 chr11 70369926 70370040 -51473816 - PB1D10 SINE Alu -2 115 1 9 1121 919 9 0 0 chr11 70370071 70370178 -51473678 - B1_Mm SINE Alu 0 147 41 9 1121 554 186 126 8 chr11 70370220 70370339 -51473517 + B1_Mus1 SINE Alu 6 138 -10 9 1121 285 51 0 0 chr11 70370339 70370378 -51473478 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1121 234 81 0 0 chr11 70371727 70371764 -51472092 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 9 1121 252 0 0 0 chr11 70371779 70371807 -51472049 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1121 1392 73 10 5 chr11 70371880 70372072 -51471784 + B2_Mm1t SINE B2 1 193 0 9 1121 523 268 25 50 chr11 70372236 70372397 -51471459 + RSINE1 SINE B4 2 158 -7 9 1121 261 0 0 0 chr11 70372429 70372458 -51471398 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1121 754 186 0 0 chr11 70372477 70372601 -51471255 + B1_Mus1 SINE Alu 2 125 -23 9 1121 409 239 18 153 chr11 70372478 70372641 -51471215 + ID_B1 SINE B4 84 224 0 9 1121 360 332 73 122 chr11 70372641 70372725 -51471131 + MT2B LTR ERVL 167 401 -200 9 1121 557 245 63 0 chr11 70372728 70372871 -51470985 - Lx6 LINE L1 -95 7365 7214 9 1121 423 98 0 0 chr11 70372938 70372999 -51470857 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 1121 304 242 0 96 chr11 70373331 70373404 -51470452 - PB1D10 SINE Alu -11 106 41 9 1121 306 50 0 0 chr11 70373419 70373459 -51470397 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 1121 1194 75 0 0 chr11 70373459 70373605 -51470251 - B1_Mus2 SINE Alu -1 146 1 9 1121 605 234 78 0 chr11 70373879 70374007 -51469849 - B1F2 SINE Alu -9 140 3 9 1121 944 68 288 0 chr11 70374032 70374178 -51469678 + B2_Mm2 SINE B2 2 189 -6 9 1121 371 239 144 8 chr11 70374178 70374296 -51469560 - B1F SINE Alu -13 136 3 9 1121 2178 177 61 2 chr11 70374443 70374839 -51469017 - MTD LTR MaLR 0 419 1 9 1121 315 85 0 0 chr11 70375075 70375122 -51468734 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1121 294 235 70 6 chr11 70375129 70375206 -51468650 - B1F SINE Alu -52 97 19 9 1121 339 300 63 48 chr11 70375461 70375587 -51468269 - MIR3 SINE MIR -16 192 65 9 1121 288 53 0 0 chr11 70377266 70377304 -51466552 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1121 225 0 0 0 chr11 70377812 70377837 -51466019 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1121 364 161 25 0 chr11 70377939 70378020 -51465836 + CT-rich Low_complexity Low_complexity 2 84 0 9 1121 293 363 40 0 chr11 70379131 70379255 -51464601 + MIRb SINE MIR 112 240 -28 9 1121 633 243 60 95 chr11 70379637 70379805 -51464051 + RSINE1 SINE B4 4 165 0 9 1121 245 288 148 89 chr11 70379805 70379839 -51464017 + B3 SINE B2 3 216 0 9 1121 296 245 74 91 chr11 70379842 70379963 -51463893 + PB1D9 SINE Alu 2 120 0 9 1121 267 156 0 0 chr11 70379963 70380008 -51463848 + ID_B1 SINE B4 176 220 -4 9 1121 1146 82 7 0 chr11 70381180 70381327 -51462529 - B1_Mus1 SINE Alu 0 148 1 9 1121 358 313 138 9 chr11 70381338 70381454 -51462402 - B4A SINE B4 -151 141 11 9 1121 746 287 33 6 chr11 70381494 70381676 -51462180 + B4A SINE B4 1 187 -105 9 1121 416 179 192 19 chr11 70382336 70382431 -51461425 - PB1 SINE Alu -15 112 6 9 1121 1114 177 28 19 chr11 70382452 70382665 -51461191 - B3 SINE B2 0 216 2 9 1121 605 247 118 44 chr11 70382955 70383226 -51460630 - B4 SINE B4 0 292 2 9 1121 494 175 104 40 chr11 70383236 70383361 -51460495 - B1F SINE Alu 0 149 17 9 1121 596 222 45 19 chr11 70383362 70383518 -51460338 + MER2 DNA MER2_type 104 263 -82 9 1121 285 265 14 29 chr11 70383542 70383612 -51460244 + PB1D10 SINE Alu 27 95 -22 9 1121 282 318 35 43 chr11 70383612 70383657 -51460199 + ID_B1 SINE B4 108 221 -3 9 1121 851 144 23 0 chr11 70383675 70383807 -51460049 + B1_Mur2 SINE Alu 1 135 -14 9 1121 228 67 0 0 chr11 70384005 70384035 -51459821 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 9 1121 368 169 0 0 chr11 70384055 70384114 -51459742 - B1_Mur4 SINE Alu -86 64 6 9 1121 302 321 12 0 chr11 70384114 70384139 -51459717 - B4 SINE B4 -144 148 64 9 1121 343 260 135 0 chr11 70384169 70384265 -51459591 + PB1D10 SINE Alu 7 115 -2 9 1121 299 222 48 0 chr11 70384372 70384435 -51459421 + ID4_ SINE ID 2 67 -16 9 1121 472 215 27 88 chr11 70384474 70384622 -51459234 - B1F2 SINE Alu -1 148 10 9 1121 344 237 124 44 chr11 70384641 70384778 -51459078 - B1F1 SINE Alu -1 148 1 9 1122 411 353 78 5 chr11 70386325 70386516 -51457340 + MER20B DNA MER1_type 1 205 -578 9 1122 234 0 0 0 chr11 70386873 70386899 -51456957 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1122 274 378 19 67 chr11 70387490 70387700 -51456156 - MIRb SINE MIR -43 225 26 9 1122 30 27 0 0 chr11 70387979 70388016 -51455840 + AT_rich Low_complexity Low_complexity 1 37 0 9 1122 843 245 79 5 chr11 70388039 70388228 -51455628 - B3 SINE B2 -12 204 2 9 1122 445 204 310 0 chr11 70388288 70388401 -51455455 - B1_Mur4 SINE Alu -1 149 2 9 1122 285 296 103 8 chr11 70388405 70388531 -51455325 - L1MB2 LINE L1 -45 6126 5989 1 1122 831 171 46 0 chr11 70388889 70389041 -51454815 - URR1B DNA MER1_type -58 167 9 1 1122 1396 79 21 10 chr11 70389058 70389250 -51454606 + B2_Mm2 SINE B2 2 195 0 1 1122 3328 53 10 0 chr11 70389386 70389782 -51454074 - MTB LTR MaLR 0 400 1 1 1122 240 197 110 10 chr11 70390739 70390823 -51453033 + MIR3 SINE MIR 60 159 -49 1 1122 453 250 62 9 chr11 70391023 70391136 -51452720 - PB1D9 SINE Alu -1 119 1 1 1122 312 331 85 23 chr11 70391497 70391673 -51452183 + MIRb SINE MIR 31 217 -51 1 1122 181 258 14 70 chr11 70392354 70392425 -51451431 + L2a LINE L2 3304 3370 -56 1 1122 646 248 61 15 chr11 70392457 70392654 -51451202 - B3 SINE B2 -5 211 6 1 1122 753 249 19 62 chr11 70392661 70392871 -51450985 - ID_B1 SINE B4 -21 203 3 1 1122 222 205 0 0 chr11 70392894 70392972 -51450884 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1122 257 312 107 0 chr11 70393215 70393327 -51450529 - L3b LINE CR1 -196 286 163 1 1122 183 80 0 0 chr11 70393495 70393520 -51450336 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1122 268 211 0 17 chr11 70393563 70393621 -51450235 - ID2 SINE ID -26 57 1 1 1122 378 250 102 0 chr11 70393632 70393740 -51450116 - PB1 SINE Alu -8 119 1 1 1122 553 238 12 0 chr11 70394139 70394303 -51449553 + CT-rich Low_complexity Low_complexity 1 166 0 1 1122 365 247 31 10 chr11 70394711 70394809 -51449047 - PB1D10 SINE Alu -6 111 12 1 1122 722 251 68 10 chr11 70395037 70395242 -51448614 - ID_B1 SINE B4 -5 219 3 1 1122 1371 110 11 0 chr11 70395369 70395560 -51448296 - B2_Mm1t SINE B2 0 193 1 1 1122 531 125 374 28 chr11 70396008 70396115 -51447741 + B1_Mur4 SINE Alu 1 144 -6 1 1122 275 250 0 18 chr11 70396128 70396185 -51447671 - RSINE1 SINE B4 -103 62 7 1 1122 194 289 110 47 chr11 70396279 70396359 -51447497 + MIRm SINE MIR 8 96 -180 1 1122 1357 104 61 79 chr11 70396359 70396588 -51447268 + URR1B DNA MER1_type 1 225 0 1 1122 194 289 110 47 chr11 70396588 70396634 -51447222 + MIRm SINE MIR 97 142 -134 1 1122 338 327 123 12 chr11 70398359 70398529 -51445327 + MamRep1879 DNA hAT? 3 191 -25 1 1122 899 138 31 6 chr11 70398533 70398694 -51445162 + Lx4A LINE L1 6893 7057 -1 1 1122 204 40 0 0 chr11 70399419 70399444 -51444412 + (CCTAT)n Simple_repeat Simple_repeat 4 28 0 1 1122 535 264 47 0 chr11 70399556 70399685 -51444171 - ID_B1 SINE B4 -4 220 86 1 1122 388 283 0 29 chr11 70399750 70399852 -51444004 - B1_Mm SINE Alu -47 100 2 1 1122 2633 123 117 19 chr11 70400307 70400786 -51443070 - RMER15 LTR ERVL 0 575 50 1 1122 376 337 0 0 chr11 70401299 70401400 -51442456 - PB1D10 SINE Alu -6 111 11 1 1122 248 343 37 47 chr11 70401329 70401436 -51442420 - B4A SINE B4 -123 169 64 1 1122 366 272 125 23 chr11 70402015 70402143 -51441713 + B3A SINE B2 13 153 -45 1 1122 358 206 55 0 chr11 70402132 70402205 -51441651 - B3 SINE B2 -92 124 48 1 1122 637 169 118 14 chr11 70402283 70402427 -51441429 - ID_B1 SINE B4 -1 223 65 1 1122 632 129 0 10 chr11 70402587 70402689 -51441167 - B1_Mus2 SINE Alu -4 143 43 1 1122 1236 54 0 0 chr11 70402749 70402896 -51440960 - B1_Mus2 SINE Alu 0 147 1 1 1122 883 254 133 43 chr11 70403003 70403238 -51440618 - L1MB7 LINE L1 -72 6112 5868 1 1122 297 288 54 9 chr11 70403238 70403350 -51440506 - PB1D10 SINE Alu 0 117 1 1 1122 883 254 133 43 chr11 70403350 70403559 -51440297 - L1MB7 LINE L1 -317 5867 5628 1 1122 522 147 105 0 chr11 70403593 70403688 -51440168 - PB1D9 SINE Alu 0 120 16 1 1122 278 292 5 166 chr11 70403594 70403799 -51440057 - RLTR25A LTR ERVK -410 693 522 1 1122 948 64 0 0 chr11 70403720 70403845 -51440011 - B1_Mus1 SINE Alu -23 125 1 1 1122 424 200 0 134 chr11 70403732 70403859 -51439997 - MT2B LTR ERVL -337 264 155 1 1122 934 233 57 32 chr11 70403983 70404262 -51439594 - L1MB7 LINE L1 -597 5581 5296 1 1122 1078 196 284 3 chr11 70404356 70404648 -51439208 - ORR1D1 LTR MaLR 0 374 1 1 1122 323 0 48 0 chr11 70404648 70404690 -51439166 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1 1122 484 232 25 59 chr11 70404708 70404827 -51439029 - RSINE1 SINE B4 -37 128 14 1 1122 275 219 146 0 chr11 70404859 70404955 -51438901 - Lx8 LINE L1 -2 7471 7362 1 1122 639 208 82 0 chr11 70404965 70405124 -51438732 - B3 SINE B2 0 216 45 1 1122 345 115 0 2 chr11 70405120 70405179 -51438677 - B1_Mur3 SINE Alu -10 139 53 1 1122 22 0 0 0 chr11 70405227 70405249 -51438607 + AT_rich Low_complexity Low_complexity 1 22 0 1 1122 848 270 158 34 chr11 70405284 70405698 -51438158 - Lx8 LINE L1 -223 7250 6775 1 1122 758 257 93 24 chr11 70405710 70405957 -51437899 - B4A SINE B4 0 292 29 1 1122 2672 140 25 16 chr11 70405997 70406446 -51437410 - RLTR11B LTR ERVK 0 453 1 1 1122 400 297 0 0 chr11 70406452 70406553 -51437303 - ID_B1 SINE B4 -36 188 88 1 1122 560 212 0 8 chr11 70406580 70406713 -51437143 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 1 1122 221 159 71 100 chr11 70406715 70406785 -51437071 - ID SINE ID -145 79 12 1 1122 224 338 74 12 chr11 70406825 70406906 -51436950 - B1F1 SINE Alu -56 93 8 1 1122 478 179 31 21 chr11 70406985 70407082 -51436774 - B2_Mm2 SINE B2 -97 98 1 1 1122 325 208 41 14 chr11 70408950 70409023 -51434833 + RSINE1 SINE B4 56 130 -35 1 1122 757 172 178 0 chr11 70410078 70410252 -51433604 - B3 SINE B2 -3 213 9 1 1122 1177 107 62 6 chr11 70411613 70411791 -51432065 - B2_Mm2 SINE B2 -7 188 1 1 1122 379 328 74 51 chr11 70413592 70413724 -51430132 - MER58B DNA MER1_type -1 340 196 1 1122 386 231 86 9 chr11 70413724 70413829 -51430027 + PB1D10 SINE Alu 1 113 -4 1 1122 379 328 74 51 chr11 70413829 70413953 -51429903 - MER58B DNA MER1_type -146 195 78 1 1122 678 87 0 0 chr11 70414133 70414236 -51429620 + (TC)n Simple_repeat Simple_repeat 1 103 0 1 1122 270 0 0 0 chr11 70414236 70414265 -51429591 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1122 625 183 143 15 chr11 70414375 70414508 -51429348 + B1_Mur4 SINE Alu 1 150 0 1 1122 1320 67 61 11 chr11 70414518 70414667 -51429189 + B2_Mm1a SINE B2 2 160 -33 1 1122 279 0 0 0 chr11 70414667 70414698 -51429158 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1122 1320 67 61 11 chr11 70414698 70414729 -51429127 + B2_Mm1a SINE B2 161 191 -2 1 1122 345 153 0 46 chr11 70415996 70416126 -51427730 + C-rich Low_complexity Low_complexity 1 124 0 1 1122 591 259 43 0 chr11 70417932 70418071 -51425785 + RSINE1 SINE B4 21 165 0 1 1122 183 184 0 0 chr11 70418116 70418154 -51425702 + (CACAG)n Simple_repeat Simple_repeat 3 40 0 1 1122 263 315 48 12 chr11 70418242 70418345 -51425511 + PB1D10 SINE Alu 2 112 -8 1 1122 225 245 0 70 chr11 70418295 70418352 -51425504 + ID_B1 SINE B4 171 223 -1 1 1122 243 61 0 0 chr11 70418585 70418618 -51425238 + (CAG)n Simple_repeat Simple_repeat 2 34 0 1 1122 242 170 57 0 chr11 70418991 70419044 -51424812 - MTD LTR MaLR -8 411 356 1 1122 959 211 76 9 chr11 70419048 70419259 -51424597 - MTD LTR MaLR -193 226 2 1 1122 183 156 0 0 chr11 70419488 70419520 -51424336 + (CAATC)n Simple_repeat Simple_repeat 4 35 0 1 1122 320 0 0 24 chr11 70419707 70419748 -51424108 + (CCCTG)n Simple_repeat Simple_repeat 5 44 0 1 1122 207 0 0 0 chr11 70420085 70420108 -51423748 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1 1122 220 266 0 0 chr11 70420428 70420492 -51423364 + (CAG)n Simple_repeat Simple_repeat 2 65 0 1 1122 396 55 0 0 chr11 70420510 70420565 -51423291 + (CAG)n Simple_repeat Simple_repeat 3 57 0 1 1122 844 197 112 0 chr11 70424322 70424500 -51419356 + B3A SINE B2 1 198 0 1 1122 1192 123 39 0 chr11 70425359 70425538 -51418318 + B2_Mm2 SINE B2 2 187 -8 1 1122 1219 62 0 0 chr11 70425551 70425697 -51418159 + B1_Mus2 SINE Alu 2 147 0 1 1122 294 255 77 96 chr11 70431346 70431450 -51412406 - PB1 SINE Alu 0 127 26 1 1122 1425 174 123 35 chr11 70433085 70433396 -51410460 - ORR1D1 LTR MaLR -4 370 31 1 1122 351 0 0 0 chr11 70433396 70433435 -51410421 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1122 1425 174 123 35 chr11 70433435 70433463 -51410393 - ORR1D1 LTR MaLR -344 30 1 1 1122 1501 55 33 0 chr11 70433711 70433893 -51409963 - B2_Mm1a SINE B2 -4 189 2 1 1122 466 228 154 0 chr11 70433919 70434042 -51409814 - B1F SINE Alu -7 142 1 1 1122 1681 32 0 0 chr11 70434204 70434393 -51409463 - B2_Mm1a SINE B2 -3 190 2 1 1122 1132 103 81 0 chr11 70434736 70434892 -51408964 + B2_Mm1t SINE B2 1 160 -33 1 1122 213 39 0 0 chr11 70434892 70434918 -51408938 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1 1122 1132 103 81 0 chr11 70434918 70434935 -51408921 + B2_Mm1t SINE B2 161 187 -6 1 1122 855 181 0 39 chr11 70434944 70435099 -51408757 + B1_Mur4 SINE Alu 2 150 0 1 1122 491 198 35 35 chr11 70435256 70435371 -51408485 + RSINE1 SINE B4 16 130 -35 1 1122 752 222 70 166 chr11 70435987 70436288 -51407568 + ORR1D1 LTR MaLR 1 272 -102 1 1122 836 161 7 26 chr11 70436288 70436441 -51407415 + B1_Mur4 SINE Alu 1 150 0 1 1122 266 265 136 10 chr11 70436522 70436625 -51407231 + PB1D10 SINE Alu 2 117 0 1 1122 436 274 40 16 chr11 70436705 70436807 -51407049 + B3 SINE B2 84 186 -30 1 1122 4640 124 78 9 chr11 70436807 70437564 -51406292 + RMER17D2 LTR ERVK 1 809 0 1 1122 436 274 40 16 chr11 70437564 70437587 -51406269 + B3 SINE B2 187 212 -4 1 1122 251 263 48 39 chr11 70437852 70437955 -51405901 - YREP_Mm Unknown Unknown -1480 332 229 1 1122 445 188 42 0 chr11 70437883 70437979 -51405877 + PB1D10 SINE Alu 17 116 -1 1 1122 571 221 56 49 chr11 70438144 70438287 -51405569 + B1_Mur1 SINE Alu 2 145 -4 1 1122 1019 74 74 0 chr11 70438291 70438426 -51405430 + B1_Mus2 SINE Alu 2 146 -1 1 1122 215 111 73 18 chr11 70438426 70438481 -51405375 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 1 1122 34 42 0 0 chr11 70438526 70438574 -51405282 + AT_rich Low_complexity Low_complexity 1 48 0 1 1122 2716 181 79 7 chr11 70438574 70439119 -51404737 - Lx4B LINE L1 -10 7048 6465 1 1122 468 182 174 0 chr11 70439120 70439241 -51404615 + B3 SINE B2 74 215 -1 1 1122 400 311 167 40 chr11 70439278 70439529 -51404327 + L1M5 LINE L1 4476 4758 -1388 1 1122 263 188 0 0 chr11 70439828 70439876 -51403980 + B1_Mur4 SINE Alu 5 52 -98 1 1122 215 257 0 26 chr11 70439876 70439952 -51403904 + GA-rich Low_complexity Low_complexity 4 77 0 1 1122 468 0 0 0 chr11 70439978 70440030 -51403826 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1122 613 350 69 28 chr11 70440030 70440391 -51403465 - MT2A LTR ERVL -157 376 1 1 1122 242 277 145 43 chr11 70440391 70440505 -51403351 + B1F SINE Alu 22 147 -2 1 1122 349 234 45 174 chr11 70440511 70440666 -51403190 + RSINE1 SINE B4 12 146 -19 1 1122 324 0 0 0 chr11 70440676 70440712 -51403144 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1122 836 157 21 0 chr11 70440736 70440876 -51402980 + RLTR17 LTR ERVK 198 340 -352 1 1122 195 69 0 0 chr11 70440893 70440922 -51402934 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1122 337 123 0 198 chr11 70440927 70441006 -51402850 + B1_Mur4 SINE Alu 22 84 -66 1 1122 1197 27 0 0 chr11 70441006 70441153 -51402703 + B2_Mm1a SINE B2 1 147 -46 1 1122 200 31 0 59 chr11 70441197 70441231 -51402625 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 1 1122 207 103 0 0 chr11 70441277 70441287 -51402569 + (A)n Simple_repeat Simple_repeat 1 10 0 1 1122 1573 57 0 5 chr11 70441287 70441480 -51402376 + B2_Mm1t SINE B2 2 193 0 1 1122 1018 68 90 0 chr11 70441485 70441618 -51402238 + B1_Mus1 SINE Alu 4 148 0 1 1122 207 103 0 0 chr11 70441618 70441640 -51402216 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1122 1503 69 5 0 chr11 70441665 70441854 -51402002 + B2_Mm1t SINE B2 2 191 -2 1 1122 384 192 215 0 chr11 70442170 70442297 -51401559 - ORR1C2 LTR MaLR -81 303 144 1 1122 1647 37 0 0 chr11 70442302 70442489 -51401367 - B2_Mm1a SINE B2 -6 187 1 1 1122 1250 99 33 0 chr11 70442491 70442673 -51401183 - B2_Mm1t SINE B2 -2 191 4 1 1122 594 184 43 23 chr11 70442678 70442864 -51400992 - B3 SINE B2 -6 189 2 1 1122 734 269 19 0 chr11 70442894 70443054 -51400802 - B3 SINE B2 -37 179 17 1 1122 384 322 65 0 chr11 70443055 70443245 -51400611 - Lx8 LINE L1 -211 7433 7150 1 1122 265 97 301 14 chr11 70443245 70443318 -51400538 + B3 SINE B2 123 216 0 1 1122 212 111 56 0 chr11 70443450 70443486 -51400370 + PB1D10 SINE Alu 26 63 -54 1 1122 205 178 0 0 chr11 70443486 70443531 -51400325 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1 1122 664 56 0 0 chr11 70443531 70443620 -51400236 - B1_Mus2 SINE Alu 0 147 59 1 1122 231 61 0 0 chr11 70443654 70443687 -51400169 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1122 259 278 14 0 chr11 70444069 70444141 -51399715 - PB1 SINE Alu -8 119 47 1 1122 217 259 0 18 chr11 70444281 70444336 -51399520 + PB1D7 SINE Alu 27 80 -40 1 1122 355 263 0 92 chr11 70444315 70444424 -51399432 + B3A SINE B2 96 194 -4 1 1122 537 247 106 64 chr11 70444427 70444644 -51399212 + MTD LTR MaLR 176 403 -16 1 1122 280 230 40 26 chr11 70444695 70444771 -51399085 + GA-rich Low_complexity Low_complexity 3 79 0 1 1122 374 230 103 0 chr11 70444839 70444926 -51398930 - B1F SINE Alu -53 96 1 1 1122 1241 103 43 5 chr11 70444954 70444967 -51398889 - B2_Mm2 SINE B2 -2 193 176 1 1122 1652 42 0 0 chr11 70444967 70445157 -51398699 + B2_Mm1a SINE B2 2 191 -2 1 1122 1241 103 43 5 chr11 70445157 70445328 -51398528 - B2_Mm2 SINE B2 -20 175 3 1 1122 726 241 67 67 chr11 70445365 70445574 -51398282 - B3 SINE B2 -7 209 1 1 1122 519 246 106 58 chr11 70445587 70445794 -51398062 - ID_B1 SINE B4 -7 217 1 1 1122 304 207 9 140 chr11 70445796 70445903 -51397953 + L1MDa LINE L1 1847 1939 -4694 1 1122 734 178 88 15 chr11 70445938 70446075 -51397781 - B1_Mur2 SINE Alu -1 148 2 1 1122 685 183 130 0 chr11 70446101 70446232 -51397624 - B1_Mur4 SINE Alu -1 149 2 1 1122 336 279 169 0 chr11 70446419 70446608 -51397248 + L1MDa LINE L1 4351 4571 -1966 1 1122 361 132 235 24 chr11 70446627 70446712 -51397144 - B1F2 SINE Alu 0 149 47 1 1122 1278 20 0 7 chr11 70446776 70446924 -51396932 - B1_Mm SINE Alu 0 147 1 1 1122 24 0 0 0 chr11 70446934 70446958 -51396898 + AT_rich Low_complexity Low_complexity 1 24 0 1 1122 1266 41 0 0 chr11 70446986 70447133 -51396723 + B1_Mm SINE Alu 1 147 0 1 1122 330 91 0 0 chr11 70447133 70447188 -51396668 + (A)n Simple_repeat Simple_repeat 1 55 0 1 1122 259 152 87 0 chr11 70447204 70447250 -51396606 + PB1D7 SINE Alu 66 115 -5 1 1122 328 303 15 8 chr11 70447260 70447357 -51396499 + B3A SINE B2 1 100 -116 1 1122 1516 53 27 0 chr11 70447358 70447545 -51396311 - B2_Mm1t SINE B2 0 193 2 1 1122 548 289 13 72 chr11 70447610 70447763 -51396093 + B1_Mur2 SINE Alu 1 144 -5 1 1122 232 217 33 16 chr11 70447828 70447889 -51395967 + B1_Mur1 SINE Alu 88 149 0 1 1122 437 246 76 8 chr11 70447893 70448012 -51395844 + B3 SINE B2 5 131 -85 1 1122 490 290 22 0 chr11 70448006 70448144 -51395712 - B3A SINE B2 -49 149 9 1 1122 500 268 45 32 chr11 70448443 70448597 -51395259 + RSINE1 SINE B4 10 165 0 1 1122 497 298 6 85 chr11 70448707 70448883 -51394973 + RSINE1 SINE B4 4 165 0 1 1122 314 336 26 0 chr11 70449296 70449412 -51394444 + MLT1N2 LTR MaLR 334 452 -110 1 1122 207 0 0 0 chr11 70449427 70449450 -51394406 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1122 846 61 0 0 chr11 70449457 70449572 -51394284 + B1_Mus2 SINE Alu 33 147 0 1 1122 228 67 0 0 chr11 70449572 70449602 -51394254 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1122 337 51 51 0 chr11 70449669 70449728 -51394128 + (CAAAAA)n Simple_repeat Simple_repeat 1 62 0 1 1122 1173 57 0 0 chr11 70449735 70449876 -51393980 + B1_Mus2 SINE Alu 1 141 -6 1 1122 220 0 27 54 chr11 70449965 70450002 -51393854 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1122 1146 69 7 0 chr11 70450014 70450158 -51393698 + B1_Mus2 SINE Alu 1 145 -2 1 1122 1123 160 0 6 chr11 70450165 70450347 -51393509 - B2_Mm2 SINE B2 -14 181 1 1 1122 510 200 73 24 chr11 70450348 70450471 -51393385 - B1F SINE Alu -12 137 9 1 1122 277 272 183 10 chr11 70450477 70450581 -51393275 - PB1 SINE Alu -5 122 1 1 1122 198 0 0 0 chr11 70450588 70450610 -51393246 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1122 209 367 75 0 chr11 70451064 70451184 -51392672 - L2c LINE L2 -204 3183 3055 1 1122 334 287 112 9 chr11 70451590 70451706 -51392150 - PB1D10 SINE Alu -1 148 21 1 1122 240 216 20 0 chr11 70451772 70451823 -51392033 + (TTG)n Simple_repeat Simple_repeat 1 52 0 1 1122 336 219 61 0 chr11 70451823 70451905 -51391951 - PB1D7 SINE Alu -2 118 32 1 1122 29 0 0 0 chr11 70455537 70455566 -51388290 + AT_rich Low_complexity Low_complexity 1 29 0 1 1122 1153 49 28 0 chr11 70456894 70457037 -51386819 + B1_Mus1 SINE Alu 1 147 -1 1 1122 831 162 73 0 chr11 70457208 70457344 -51386512 - B1_Mus2 SINE Alu -1 146 1 1 1122 198 174 0 0 chr11 70457480 70457526 -51386330 + T-rich Low_complexity Low_complexity 1 46 0 1 1122 713 129 26 8 chr11 70457526 70457643 -51386213 - PB1D9 SINE Alu 0 120 2 1 1122 736 188 16 0 chr11 70461913 70462041 -51381815 - B3 SINE B2 -86 130 1 1 1122 343 191 242 11 chr11 70462479 70462574 -51381282 - PB1D9 SINE Alu 0 120 4 1 1122 306 0 0 0 chr11 70463838 70463872 -51379984 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1122 213 108 0 0 chr11 70465375 70465412 -51378444 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1122 201 308 0 0 chr11 70466777 70466829 -51377027 + GA-rich Low_complexity Low_complexity 5 56 0 1 1122 25 65 0 0 chr11 70467564 70467610 -51376246 + GC_rich Low_complexity Low_complexity 1 46 0 1 1122 216 97 0 0 chr11 70468429 70468460 -51375396 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1122 26 50 0 0 chr11 70468559 70468599 -51375257 + GC_rich Low_complexity Low_complexity 1 40 0 1 1122 503 229 32 8 chr11 70473597 70473720 -51370136 + MIR SINE MIR 33 158 -104 1 1122 853 76 17 8 chr11 70473725 70473844 -51370012 + PB1D9 SINE Alu 1 120 0 1 1122 189 0 0 0 chr11 70475113 70475134 -51368722 + (C)n Simple_repeat Simple_repeat 1 21 0 1 1122 396 316 69 0 chr11 70476414 70476588 -51367268 - MIR SINE MIR -44 218 33 1 1122 938 209 15 0 chr11 70476677 70476873 -51366983 + B3 SINE B2 18 216 0 1 1122 235 255 39 0 chr11 70476893 70476944 -51366912 + ID4_ SINE ID 29 81 -2 1 1122 453 81 0 0 chr11 70477061 70477123 -51366733 + (TCTCCC)n Simple_repeat Simple_repeat 6 67 0 1 1122 882 118 0 0 chr11 70477123 70477250 -51366606 - B1_Mur4 SINE Alu -13 137 11 1 1122 450 0 0 0 chr11 70477389 70477439 -51366417 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1122 788 207 14 7 chr11 70479231 70479377 -51364479 - B1_Mur1 SINE Alu -2 147 1 1 1122 200 238 16 0 chr11 70479387 70479450 -51364406 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1122 586 158 14 93 chr11 70479465 70479605 -51364251 - B1_Mur2 SINE Alu 0 149 21 1 1122 1738 170 119 8 chr11 70479701 70480063 -51363793 + MTD LTR MaLR 18 419 0 1 1122 269 245 8 173 chr11 70480063 70480196 -51363660 + MTD-int LTR MaLR 1 111 -1147 1 1122 307 179 0 0 chr11 70480481 70480540 -51363316 - B1F SINE Alu -35 114 56 1 1122 272 268 53 53 chr11 70480557 70480632 -51363224 - ID4 SINE ID -6 77 3 1 1122 775 260 25 25 chr11 70480656 70480853 -51363003 - B3A SINE B2 0 198 2 1 1122 190 191 64 0 chr11 70481063 70481110 -51362746 + L2c LINE L2 3032 3081 -306 1 1122 503 229 98 0 chr11 70484699 70484821 -51359035 - RSINE1 SINE B4 0 165 32 1 1122 684 95 19 0 chr11 70486063 70486168 -51357688 - B1_Mur2 SINE Alu -5 144 38 1 1122 907 139 34 20 chr11 70486409 70486556 -51357300 + B1_Mur2 SINE Alu 1 149 0 1 1122 1296 77 43 16 chr11 70486559 70486710 -51357146 + B2_Mm2 SINE B2 3 155 -40 1 1122 561 52 0 0 chr11 70486710 70486787 -51357069 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 1 1122 1104 62 0 70 chr11 70486796 70486952 -51356904 + B1_Mus1 SINE Alu 3 147 -1 1 1122 1296 77 43 16 chr11 70486952 70486976 -51356880 + B2_Mm2 SINE B2 164 192 -3 1 1122 207 0 0 0 chr11 70487053 70487076 -51356780 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1122 1155 70 0 7 chr11 70487076 70487214 -51356642 - B1_Mus2 SINE Alu -8 139 2 1 1122 493 189 15 4 chr11 70487895 70488001 -51355855 - B3 SINE B2 -83 115 9 1 1122 270 0 0 0 chr11 70488432 70488462 -51355394 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1122 767 78 250 0 chr11 70488469 70488585 -51355271 - B1_Mus1 SINE Alu -1 147 3 1 1122 339 25 0 0 chr11 70489317 70489357 -51354499 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1122 360 64 0 0 chr11 70489701 70489748 -51354108 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1122 333 0 0 0 chr11 70491031 70491068 -51352788 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1122 258 143 0 0 chr11 70491475 70491524 -51352332 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1122 1194 68 0 0 chr11 70491529 70491677 -51352179 - B1_Mus1 SINE Alu 0 148 1 1 1122 340 113 0 0 chr11 70491678 70491731 -51352125 - B3 SINE B2 -3 213 161 1 1122 615 274 16 144 chr11 70493244 70493261 -51350595 - ID_B1 SINE B4 0 224 211 1 1122 257 0 30 0 chr11 70493261 70493294 -51350562 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1 1122 615 274 16 144 chr11 70493294 70493532 -51350324 - ID_B1 SINE B4 -14 210 2 1 1122 504 32 0 0 chr11 70493707 70493769 -51350087 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1122 1116 82 0 20 chr11 70493853 70494003 -51349853 + B1_Mm SINE Alu 1 147 0 1 1122 216 135 0 0 chr11 70495071 70495108 -51348748 + (GGA)n Simple_repeat Simple_repeat 2 38 0 1 1122 195 175 0 0 chr11 70495409 70495466 -51348390 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1122 325 203 0 14 chr11 70495477 70495547 -51348309 + HAL1-3A_ME LINE L1 1976 2044 -814 1 1122 300 228 14 109 chr11 70497840 70497928 -51345928 + ID4_ SINE ID 2 87 -65 1 1122 496 299 0 20 chr11 70498346 70498493 -51345363 - B1F2 SINE Alu -5 144 1 1 1122 292 209 261 11 chr11 70498618 70498710 -51345146 + PB1D10 SINE Alu 1 115 -2 1 1122 1084 249 25 36 chr11 70498714 70498989 -51344867 + B4A SINE B4 2 273 -19 1 1122 992 250 14 0 chr11 70499045 70499257 -51344599 + ID_B1 SINE B4 2 216 -8 1 1122 685 246 58 0 chr11 70502939 70503077 -51340779 + RSINE1 SINE B4 3 148 -17 1 1122 959 156 129 15 chr11 70504099 70504301 -51339555 + URR1B DNA MER1_type 1 225 0 2 1122 1562 42 0 0 chr11 70504392 70504584 -51339272 - B2_Mm1t SINE B2 0 193 2 3 1122 718 194 16 0 chr11 70504659 70504783 -51339073 - B1_Mur1 SINE Alu -6 143 18 4 1122 520 188 0 0 chr11 70504794 70504890 -51338966 - ID_B1 SINE B4 0 224 129 5 1122 923 196 21 21 chr11 70504897 70505090 -51338766 + B3A SINE B2 6 198 0 6 1122 393 242 138 24 chr11 70505105 70505228 -51338628 - ID_B1 SINE B4 -83 141 5 5 1122 258 314 77 13 chr11 70505376 70505416 -51338440 - B4A SINE B4 -43 249 87 7 1122 666 152 0 9 chr11 70505416 70505529 -51338327 - B1_Mur2 SINE Alu -36 113 2 8 1122 328 232 0 170 chr11 70505529 70505559 -51338297 - MT2B LTR ERVL -448 153 147 9 1122 751 191 0 58 chr11 70505811 70505967 -51337889 - B1_Mur2 SINE Alu 0 149 3 1 1122 1160 55 7 0 chr11 70506000 70506146 -51337710 + B1_Mus1 SINE Alu 2 148 0 1 1122 180 0 0 0 chr11 70506146 70506166 -51337690 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1122 281 339 43 0 chr11 70506180 70506295 -51337561 + L2b LINE L2 2250 2369 -1050 1 1122 696 24 0 0 chr11 70506540 70506622 -51337234 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1122 836 221 85 5 chr11 70506663 70506863 -51336993 - B3 SINE B2 0 216 1 1 1122 992 73 73 0 chr11 70506892 70507028 -51336828 + B1_Mus2 SINE Alu 2 147 0 1 1122 1036 209 24 0 chr11 70507044 70507250 -51336606 - B3 SINE B2 -5 211 1 1 1122 368 191 274 11 chr11 70507365 70507460 -51336396 + B3A SINE B2 14 133 -65 1 1122 494 285 32 0 chr11 70507459 70507582 -51336274 + ID_B1 SINE B4 94 220 -4 1 1122 558 0 0 0 chr11 70507716 70507778 -51336078 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1122 331 187 0 74 chr11 70507806 70507887 -51335969 + B3 SINE B2 8 82 -134 2 1122 870 123 3 18 chr11 70507957 70508130 -51335726 + B1_Mus2 SINE Alu 9 144 -3 2 1122 195 42 0 0 chr11 70508130 70508154 -51335702 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1122 844 107 238 7 chr11 70508291 70508442 -51335414 + B2_Mm2 SINE B2 1 186 -9 2 1122 323 278 63 0 chr11 70508446 70508572 -51335284 + L1MC5 LINE L1 7791 7924 -37 2 1122 206 287 170 0 chr11 70508918 70509012 -51334844 + L2b LINE L2 3224 3333 -42 1 1122 308 252 143 15 chr11 70509042 70509175 -51334681 + B3A SINE B2 1 150 -48 2 1122 187 31 0 59 chr11 70509199 70509233 -51334623 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 1122 1132 0 0 0 chr11 70509596 70509730 -51334126 + L1_Mm LINE L1 4548 4681 -1202 2 1122 660 15 0 4 chr11 70509730 70509821 -51334035 + B1_Mus2 SINE Alu 55 142 -8 2 1122 251 72 0 23 chr11 70509821 70509864 -51333992 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1122 1288 150 23 0 chr11 70510226 70510446 -51333410 + URR1B DNA MER1_type 1 225 0 3 1122 1021 72 50 0 chr11 70510786 70510925 -51332931 - B1_Mus1 SINE Alu 0 148 3 3 1122 484 265 48 96 chr11 70510928 70511001 -51332855 + B3 SINE B2 35 103 -113 3 1122 1101 128 16 31 chr11 70511001 70511195 -51332661 - B2_Mm1t SINE B2 -2 191 1 3 1122 484 265 48 96 chr11 70511195 70511309 -51332547 + B3 SINE B2 104 213 -3 3 1122 1344 78 0 30 chr11 70511319 70511516 -51332340 + B2_Mm2 SINE B2 2 192 -3 3 1122 1283 93 22 0 chr11 70511645 70511828 -51332028 + B2_Mm2 SINE B2 1 187 -8 3 1122 899 178 44 33 chr11 70511890 70512070 -51331786 + B3A SINE B2 2 183 -15 3 1122 927 141 7 0 chr11 70512106 70512255 -51331601 - B1_Mur4 SINE Alu 0 150 1 3 1122 215 174 22 0 chr11 70512598 70512644 -51331212 + ID4 SINE ID 12 58 -25 3 1122 300 257 32 81 chr11 70512743 70512866 -51330990 + PB1D10 SINE Alu 1 117 0 4 1122 212 149 21 0 chr11 70513948 70513995 -51329861 + (CCCG)n Simple_repeat Simple_repeat 2 49 0 4 1122 33 94 0 0 chr11 70514019 70514115 -51329741 + GC_rich Low_complexity Low_complexity 1 96 0 4 1123 195 338 85 14 chr11 70517758 70517899 -51325957 + MIRb SINE MIR 56 206 -62 4 1123 284 354 69 29 chr11 70518088 70518292 -51325564 + MIRb SINE MIR 11 226 -42 4 1123 1260 115 125 0 chr11 70520995 70521195 -51322661 - URR1A DNA MER1_type -1 225 1 4 1123 391 274 38 0 chr11 70521242 70521348 -51322508 - PB1D10 SINE Alu -4 113 4 4 1123 256 133 44 0 chr11 70521438 70521483 -51322373 + U6 snRNA snRNA 61 107 0 4 1123 873 27 0 0 chr11 70522957 70523069 -51320787 + B1_Mus2 SINE Alu 34 145 -2 4 1123 189 74 0 0 chr11 70523069 70523096 -51320760 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1123 487 248 28 42 chr11 70523460 70523603 -51320253 + B1F SINE Alu 3 143 -6 5 1123 287 339 170 0 chr11 70523612 70523724 -51320132 + B1_Mus2 SINE Alu 2 132 -15 5 1123 233 189 75 0 chr11 70523755 70523808 -51320048 + ID4_ SINE ID 16 72 -11 5 1123 794 213 65 15 chr11 70524208 70524408 -51319448 - B3 SINE B2 -4 212 3 5 1123 25 0 0 0 chr11 70524441 70524466 -51319390 + AT_rich Low_complexity Low_complexity 1 25 0 5 1123 742 224 6 47 chr11 70524577 70524746 -51319110 - RSINE1 SINE B4 -2 163 2 5 1123 245 214 45 45 chr11 70524799 70524887 -51318969 - RSINE1 SINE B4 -3 162 75 5 1123 682 276 85 59 chr11 70524891 70525262 -51318594 - MTE2a LTR MaLR -15 404 26 5 1123 241 266 12 48 chr11 70525279 70525362 -51318494 - B4 SINE B4 -211 81 2 5 1123 24 0 0 0 chr11 70525496 70525520 -51318336 + AT_rich Low_complexity Low_complexity 1 24 0 5 1123 345 301 0 31 chr11 70525575 70525671 -51318185 + ID_B1 SINE B4 80 172 -52 6 1123 1190 48 0 0 chr11 70525726 70525873 -51317983 - B1_Mus2 SINE Alu 0 147 1 6 1123 711 182 0 0 chr11 70525931 70526057 -51317799 - B1_Mus1 SINE Alu -2 146 21 6 1123 565 262 87 0 chr11 70526067 70526193 -51317663 - B1_Mur1 SINE Alu 0 149 13 6 1123 688 269 88 66 chr11 70526254 70526528 -51317328 - B4A SINE B4 0 292 13 6 1123 438 264 7 67 chr11 70526646 70526796 -51317060 - B1F SINE Alu -8 141 1 6 1123 738 232 0 0 chr11 70526816 70526967 -51316889 + RSINE1 SINE B4 2 152 -13 6 1123 22 0 0 0 chr11 70527150 70527172 -51316684 + AT_rich Low_complexity Low_complexity 1 22 0 6 1123 7193 57 1 1 chr11 70527172 70528098 -51315758 - L1_Mus1 LINE L1 0 6567 5668 6 1123 457 254 12 165 chr11 70528102 70528272 -51315584 - ID_B1 SINE B4 0 224 81 6 1123 343 336 42 7 chr11 70528609 70528753 -51315103 + Charlie15a DNA MER1_type 76 224 0 7 1123 261 0 0 0 chr11 70529271 70529300 -51314556 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 7 1123 756 177 43 0 chr11 70529302 70529443 -51314413 - B1_Mur1 SINE Alu 0 149 3 7 1123 266 297 110 0 chr11 70530277 70530368 -51313488 - PB1D10 SINE Alu -16 101 1 7 1123 681 221 23 52 chr11 70531156 70531328 -51312528 - B3A SINE B2 0 198 32 7 1123 436 184 216 17 chr11 70531338 70531454 -51312402 + B1_Mus2 SINE Alu 2 140 -7 7 1123 939 90 38 0 chr11 70531597 70531730 -51312126 - B1_Mus1 SINE Alu -9 139 2 7 1123 469 270 8 5 chr11 70531742 70531865 -51311991 - PB1D10 SINE Alu -8 141 11 7 1123 312 341 38 95 chr11 70532246 70532490 -51311366 + MIR SINE MIR 16 259 -3 7 1123 992 116 7 0 chr11 70533057 70533204 -51310652 + B1_Mur3 SINE Alu 1 148 -1 7 1123 243 242 0 101 chr11 70533273 70533342 -51310514 - ID4_ SINE ID -6 77 16 8 1123 252 308 54 11 chr11 70533380 70533472 -51310384 - PB1D10 SINE Alu 0 117 22 8 1123 711 304 42 23 chr11 70533524 70533783 -51310073 - B4A SINE B4 0 292 29 8 1123 248 235 0 0 chr11 70533805 70533873 -51309983 + PB1 SINE Alu 42 109 -18 8 1123 777 67 0 0 chr11 70533891 70533996 -51309860 + B2_Mm2 SINE B2 2 106 -89 8 1123 180 111 0 0 chr11 70534048 70534075 -51309781 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 8 1123 427 297 37 55 chr11 70534771 70534935 -51308921 + ID_B1 SINE B4 2 162 -62 8 1123 891 125 28 7 chr11 70535079 70535224 -51308632 + B1_Mur4 SINE Alu 3 150 0 8 1123 624 229 38 8 chr11 70535265 70535397 -51308459 - RSINE1 SINE B4 -29 136 1 8 1123 551 211 75 8 chr11 70535831 70535965 -51307891 + B1_Mur2 SINE Alu 1 143 -6 8 1123 1377 39 33 27 chr11 70535977 70536161 -51307695 + B2_Mm2 SINE B2 4 188 -7 9 1123 375 23 0 0 chr11 70536237 70536281 -51307575 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1123 411 21 0 0 chr11 70536281 70536328 -51307528 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1123 613 182 86 16 chr11 70536349 70536477 -51307379 + B1_Mur1 SINE Alu 3 139 -10 9 1123 1071 68 7 7 chr11 70536704 70536852 -51307004 - B1_Mus1 SINE Alu 0 148 1 9 1123 298 288 64 14 chr11 70536939 70537080 -51306776 - B1F SINE Alu -1 148 1 9 1123 459 173 0 0 chr11 70537652 70537727 -51306129 + ID4 SINE ID 3 77 -6 9 1123 503 220 247 0 chr11 70540196 70540346 -51303510 + B3 SINE B2 2 188 -28 9 1123 827 254 67 24 chr11 70540376 70540630 -51303226 + B4 SINE B4 18 282 -10 9 1123 347 238 137 10 chr11 70540692 70540794 -51303062 + PB1D10 SINE Alu 3 117 0 9 1123 249 304 181 12 chr11 70541190 70541350 -51302506 + L2a LINE L2 2962 3148 -278 1 1123 306 339 61 33 chr11 70541418 70541598 -51302258 - MIR SINE MIR -75 187 3 1 1123 189 0 0 0 chr11 70542265 70542286 -51301570 + (CAGCC)n Simple_repeat Simple_repeat 4 24 0 1 1123 180 111 0 0 chr11 70542765 70542792 -51301064 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1123 803 140 81 0 chr11 70543418 70543554 -51300302 + B1_Mus2 SINE Alu 1 147 0 1 1123 262 264 53 40 chr11 70543605 70543680 -51300176 + PB1D10 SINE Alu 33 108 -9 1 1123 23 33 0 0 chr11 70543886 70543916 -51299940 + AT_rich Low_complexity Low_complexity 1 30 0 1 1123 234 306 115 18 chr11 70544640 70544753 -51299103 - MIRc SINE MIR -120 148 25 1 1123 201 74 0 0 chr11 70545160 70545187 -51298669 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1 1123 273 330 35 9 chr11 70545197 70545313 -51298543 - PB1D7 SINE Alu 0 120 2 1 1123 198 0 0 0 chr11 70545327 70545349 -51298507 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1123 462 248 129 24 chr11 70545349 70545473 -51298383 - B1_Mur1 SINE Alu -10 139 3 1 1123 504 0 0 0 chr11 70545485 70545541 -51298315 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1123 587 226 15 29 chr11 70545541 70545678 -51298178 - B1_Mur1 SINE Alu -12 137 3 1 1123 229 325 54 47 chr11 70545572 70545691 -51298165 - B4 SINE B4 -93 199 80 1 1123 372 119 0 0 chr11 70545691 70545750 -51298106 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1123 526 225 58 0 chr11 70545751 70545889 -51297967 - B1_Mur4 SINE Alu -2 148 3 1 1123 218 281 99 58 chr11 70545894 70546015 -51297841 - PB1 SINE Alu 0 127 2 1 1123 282 203 93 13 chr11 70546316 70546391 -51297465 + RSINE1 SINE B4 2 82 -83 1 1123 651 157 13 91 chr11 70546425 70546579 -51297277 - B1_Mus1 SINE Alu -6 142 1 1 1123 850 163 0 0 chr11 70546612 70546747 -51297109 + B1_Mus2 SINE Alu 5 139 -8 1 1123 616 168 64 21 chr11 70546897 70547037 -51296819 - B1_Mur1 SINE Alu 0 149 4 1 1123 510 245 68 35 chr11 70548252 70548401 -51295455 + B3A SINE B2 4 156 -42 1 1123 468 35 0 0 chr11 70548401 70548459 -51295397 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1123 214 253 77 137 chr11 70548459 70548492 -51295364 + B2_Mm1t SINE B2 148 175 -18 1 1123 1131 30 0 0 chr11 70548574 70548708 -51295148 + B1_Mus2 SINE Alu 1 134 -13 1 1123 237 33 0 0 chr11 70548708 70548738 -51295118 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1123 485 265 61 0 chr11 70548747 70548879 -51294977 - ID_B1 SINE B4 0 224 85 1 1123 508 223 23 103 chr11 70548980 70549012 -51294844 - B2_Mm2 SINE B2 -34 161 131 1 1123 897 229 35 0 chr11 70549012 70549213 -51294643 - B3 SINE B2 -7 209 2 1 1123 758 199 7 1 chr11 70549213 70549355 -51294501 - B3 SINE B2 -74 142 1 1 1123 210 118 0 0 chr11 70549358 70549392 -51294464 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1123 209 337 40 30 chr11 70549660 70549761 -51294095 - MIR SINE MIR -145 117 16 1 1123 346 168 29 87 chr11 70550843 70550947 -51292909 + URR1A DNA MER1_type 69 166 -60 1 1123 591 171 71 24 chr11 70550951 70551077 -51292779 - B1_Mus2 SINE Alu -7 140 9 1 1123 586 92 11 0 chr11 70551085 70551172 -51292684 + URR1A DNA MER1_type 138 225 -1 1 1123 1638 21 0 0 chr11 70551963 70552155 -51291701 - B2_Mm1a SINE B2 0 193 2 1 1123 282 95 0 0 chr11 70552239 70552281 -51291575 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1123 198 0 0 0 chr11 70552281 70552303 -51291553 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1123 240 35 0 0 chr11 70552303 70552331 -51291525 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1123 315 71 0 0 chr11 70552332 70552374 -51291482 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1123 978 182 63 15 chr11 70552604 70552658 -51291198 - B3 SINE B2 0 216 164 1 1123 300 27 0 0 chr11 70552658 70552695 -51291161 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1123 978 182 63 15 chr11 70552695 70552846 -51291010 - B3 SINE B2 -53 163 2 1 1123 193 261 76 59 chr11 70552846 70552964 -51290892 + L2c LINE L2 3048 3167 -220 1 1123 3157 261 90 27 chr11 70553639 70554669 -51289187 - Lx8 LINE L1 -51 7422 6328 1 1123 468 0 0 0 chr11 70554712 70554764 -51289092 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 1 1123 403 266 45 9 chr11 70554764 70554874 -51288982 - PB1D7 SINE Alu -6 114 1 1 1123 533 67 11 0 chr11 70555033 70555122 -51288734 - L1Md_F2 LINE L1 0 6582 6493 1 1123 217 337 56 11 chr11 70555271 70555361 -51288495 + L2c LINE L2 3294 3387 0 1 1123 224 322 14 20 chr11 70555353 70555515 -51288341 + MIR SINE MIR 21 183 -85 1 1123 180 125 0 0 chr11 70555730 70555762 -51288094 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1123 760 223 6 43 chr11 70555765 70555929 -51287927 - B3 SINE B2 -56 160 3 1 1123 521 218 18 9 chr11 70555936 70556047 -51287809 - PB1D10 SINE Alu -1 116 5 1 1123 868 177 156 0 chr11 70557066 70557252 -51286604 + B3 SINE B2 1 215 -1 1 1123 334 337 103 75 chr11 70557919 70558201 -51285655 + B4 SINE B4 3 292 0 1 1123 464 246 6 0 chr11 70558217 70558392 -51285464 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1123 522 251 45 25 chr11 70558523 70558673 -51285183 + B3A SINE B2 26 181 -14 1 1123 373 256 13 0 chr11 70558700 70558778 -51285078 + ID4 SINE ID 2 80 -3 1 1123 357 280 97 0 chr11 70559520 70559613 -51284243 + RSINE1 SINE B4 1 102 -63 1 1123 1212 73 0 0 chr11 70559625 70559776 -51284080 - B2_Mm2 SINE B2 -43 152 2 1 1123 735 95 0 0 chr11 70559786 70559891 -51283965 + (TTCC)n Simple_repeat Simple_repeat 4 108 0 1 1123 261 0 0 0 chr11 70559891 70559920 -51283936 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 1123 1118 97 0 0 chr11 70559920 70560065 -51283791 - B1_Mus2 SINE Alu -1 146 2 1 1123 333 0 0 0 chr11 70560106 70560143 -51283713 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1123 363 242 0 0 chr11 70560355 70560417 -51283439 - B3 SINE B2 -154 62 1 1 1123 1071 205 25 0 chr11 70560453 70560653 -51283203 + B3 SINE B2 3 207 -9 1 1123 510 17 0 0 chr11 70560653 70560712 -51283144 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1123 318 289 38 38 chr11 70560716 70560795 -51283061 - RSINE1 SINE B4 0 165 87 1 1123 256 284 30 0 chr11 70560981 70561048 -51282808 - B4A SINE B4 -175 117 49 1 1123 1568 32 16 0 chr11 70561070 70561257 -51282599 - B2_Mm1a SINE B2 -2 191 2 1 1123 240 336 9 52 chr11 70561479 70561595 -51282261 + LTR88b LTR Gypsy? 622 732 -105 1 1123 433 199 53 15 chr11 70561896 70562029 -51281827 + RLTR15 LTR ERVK 1 138 -221 1 1123 526 239 60 63 chr11 70562027 70562295 -51281561 + RLTR15 LTR ERVK 72 338 -21 1 1123 1250 243 84 6 chr11 70562487 70562830 -51281026 + ORR1D2 LTR MaLR 1 370 0 1 1123 347 269 152 66 chr11 70562893 70563044 -51280812 + ORR1D2-int LTR MaLR 1159 1345 -235 1 1123 345 100 0 0 chr11 70563175 70563225 -51280631 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 1 1123 450 0 0 0 chr11 70563237 70563287 -51280569 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1123 780 229 7 0 chr11 70563299 70563439 -51280417 + B1_Mur1 SINE Alu 9 149 0 1 1123 585 292 29 60 chr11 70564172 70564379 -51279477 + B3A SINE B2 2 203 -13 1 1123 578 183 24 0 chr11 70564386 70564555 -51279301 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 1123 258 179 0 0 chr11 70564584 70564640 -51279216 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1123 1272 167 0 14 chr11 70564922 70565140 -51278716 + B3 SINE B2 2 216 0 1 1123 637 295 66 78 chr11 70566299 70566556 -51277300 + MER77 LTR ERVL 3 256 -351 1 1123 246 62 0 0 chr11 70566563 70566595 -51277261 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1123 1223 48 0 0 chr11 70566595 70566742 -51277114 - B1_Mm SINE Alu 0 147 1 1 1123 579 290 14 7 chr11 70566819 70566965 -51276891 + MER77 LTR ERVL 307 453 -154 1 1123 275 212 329 0 chr11 70567169 70567254 -51276602 + PB1D10 SINE Alu 5 117 0 1 1123 371 315 107 27 chr11 70567310 70567460 -51276396 - RSINE1 SINE B4 0 165 4 1 1123 684 188 17 0 chr11 70567535 70567652 -51276204 + B1_Mur1 SINE Alu 5 123 -26 1 1123 450 285 53 8 chr11 70567652 70567666 -51276190 + ID_B1 SINE B4 86 222 -2 1 1123 529 281 14 21 chr11 70567800 70567942 -51275914 - ID_B1 SINE B4 -6 218 78 1 1123 721 219 65 24 chr11 70569682 70569850 -51274006 + B3 SINE B2 42 216 0 1 1123 230 256 145 60 chr11 70569948 70570031 -51273825 + MLT1B LTR MaLR 1 90 -300 1 1123 427 274 52 77 chr11 70570266 70570289 -51273567 - B4A SINE B4 -39 253 175 1 1123 1076 63 7 0 chr11 70570289 70570431 -51273425 - B1_Mus2 SINE Alu 0 147 5 1 1123 427 274 52 77 chr11 70570431 70570460 -51273396 - B4A SINE B4 -39 174 65 1 1123 201 123 92 123 chr11 70570661 70570726 -51273130 - L4 LINE RTE -1551 478 416 1 1123 344 260 58 0 chr11 70571093 70571197 -51272659 + PB1D10 SINE Alu 1 110 -7 1 1123 2936 86 10 2 chr11 70571330 70571726 -51272130 - MTB LTR MaLR -1 399 1 1 1123 1341 97 43 0 chr11 70571771 70571957 -51271899 + B2_Mm2 SINE B2 1 194 -1 1 1123 2021 189 32 17 chr11 70572179 70572588 -51271268 + MTD LTR MaLR 5 419 0 1 1123 761 176 35 0 chr11 70572737 70572879 -51270977 - B1_Mur2 SINE Alu 0 149 3 1 1123 277 219 36 127 chr11 70572939 70573049 -51270807 + B3A SINE B2 99 198 0 1 1123 1459 69 21 5 chr11 70573128 70573318 -51270538 - B2_Mm2 SINE B2 -2 193 1 1 1123 207 0 0 0 chr11 70573370 70573393 -51270463 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1123 723 62 0 40 chr11 70573406 70573507 -51270349 - B1_Mus2 SINE Alu 0 147 51 1 1123 262 243 65 39 chr11 70573453 70573530 -51270326 - RLTR25B LTR ERVK -519 509 431 1 1123 216 135 0 0 chr11 70573546 70573583 -51270273 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1123 1071 91 28 14 chr11 70573599 70573744 -51270112 + B1_Mus1 SINE Alu 2 148 0 2 1123 339 237 90 19 chr11 70574398 70574553 -51269303 + L1_Rod LINE L1 5268 5433 -864 2 1123 666 258 137 21 chr11 70574560 70574801 -51269055 + B4 SINE B4 1 269 -23 2 1123 423 0 0 0 chr11 70574801 70574848 -51269008 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1123 574 270 92 81 chr11 70574872 70575265 -51268591 + L1_Rod LINE L1 5377 5808 -39 2 1123 307 155 63 101 chr11 70575265 70575344 -51268512 - URR1B DNA MER1_type 0 225 150 2 1123 699 99 0 0 chr11 70575344 70575445 -51268411 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 2 1123 420 20 0 0 chr11 70575507 70575556 -51268300 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1123 2257 271 148 30 chr11 70575925 70576704 -51267152 + ORR1D-int LTR MaLR 308 1178 -192 2 1123 241 179 208 59 chr11 70576702 70576724 -51267132 - B2_Mm2 SINE B2 -78 117 2 2 1123 380 205 13 13 chr11 70576724 70576803 -51267053 - B4A SINE B4 -212 80 2 2 1123 336 253 0 46 chr11 70576885 70576972 -51266884 - ID4 SINE ID 0 83 1 2 1123 240 200 163 3 chr11 70577262 70577328 -51266528 + PB1D7 SINE Alu 3 76 -41 2 1123 180 0 0 0 chr11 70578329 70578349 -51265507 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1123 499 202 81 0 chr11 70578475 70578574 -51265282 + B3A SINE B2 1 107 -91 2 1123 720 248 0 0 chr11 70578766 70578915 -51264941 - B1_Mur1 SINE Alu 0 149 1 2 1123 747 210 206 16 chr11 70579140 70579329 -51264527 + URR1B DNA MER1_type 1 225 0 2 1123 433 298 18 0 chr11 70580337 70580451 -51263405 - PB1D10 SINE Alu -1 116 1 2 1123 252 333 30 0 chr11 70580574 70580673 -51263183 + PB1D10 SINE Alu 1 102 -15 2 1123 678 250 0 0 chr11 70580701 70580829 -51263027 + B1_Mur1 SINE Alu 9 136 -13 2 1123 193 0 94 0 chr11 70580829 70580861 -51262995 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1123 346 221 92 25 chr11 70581099 70581198 -51262658 - PB1D10 SINE Alu 0 120 16 2 1123 509 248 97 0 chr11 70581257 70581370 -51262486 + B1_Mur1 SINE Alu 1 124 -25 2 1123 303 246 31 78 chr11 70581527 70581655 -51262201 - RLTR25B LTR ERVK -466 562 441 2 1123 943 72 0 0 chr11 70581569 70581694 -51262162 - B1_Mus1 SINE Alu -22 126 2 2 1123 314 248 47 0 chr11 70581587 70581716 -51262140 - ORR1B1-int LTR MaLR -755 754 620 2 1123 734 249 15 63 chr11 70581735 70581941 -51261915 - B3 SINE B2 -19 197 2 2 1123 1214 48 7 0 chr11 70582176 70582322 -51261534 + B1_Mm SINE Alu 1 147 0 2 1123 701 122 0 9 chr11 70582397 70582513 -51261343 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 2 1123 333 259 39 127 chr11 70582513 70582527 -51261329 - MT2B LTR ERVL -262 339 328 2 1123 1668 47 0 0 chr11 70582527 70582720 -51261136 - B2_Mm1t SINE B2 0 193 1 2 1123 333 259 39 127 chr11 70582720 70582886 -51260970 - MT2B LTR ERVL -274 327 175 2 1123 896 128 0 0 chr11 70582756 70582889 -51260967 - B1_Mur4 SINE Alu -9 141 9 2 1123 258 32 0 0 chr11 70582964 70582995 -51260861 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1123 291 373 51 0 chr11 70583178 70583296 -51260560 + MLT1J LTR MaLR 343 466 -46 2 1123 573 156 184 24 chr11 70583311 70583436 -51260420 + B1_Mus2 SINE Alu 2 146 -1 2 1123 217 250 96 14 chr11 70583465 70583538 -51260318 + PB1D9 SINE Alu 42 120 0 2 1123 1414 73 10 16 chr11 70583871 70584065 -51259791 + B2_Mm1t SINE B2 1 193 0 2 1123 518 11 77 0 chr11 70584138 70584229 -51259627 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 1123 1252 41 0 0 chr11 70584230 70584376 -51259480 - B1_Mus1 SINE Alu -1 147 2 2 1123 457 279 40 37 chr11 70585182 70586140 -51257716 + MMSAT4 Satellite Satellite 1 960 -1 2 1123 301 294 145 16 chr11 70587339 70587502 -51256354 + MIR3 SINE MIR 15 187 -21 2 1123 420 223 41 17 chr11 70587637 70587750 -51256106 - B1F SINE Alu -33 116 1 2 1123 249 228 98 0 chr11 70587845 70587937 -51255919 - L1MB7 LINE L1 -1 6183 6083 2 1123 655 218 35 7 chr11 70588774 70588917 -51254939 - B1_Mur1 SINE Alu 0 149 3 2 1123 624 230 192 0 chr11 70589043 70589230 -51254626 - ID_B1 SINE B4 0 224 2 2 1123 236 203 41 123 chr11 70589807 70589880 -51253976 + RLTR21 LTR ERVK 1075 1141 -431 2 1123 594 276 9 55 chr11 70589834 70590012 -51253844 - B3 SINE B2 -14 184 9 2 1123 513 301 93 36 chr11 70591160 70591439 -51252417 - L1M1 LINE L1 -527 5776 5482 2 1123 393 22 0 0 chr11 70591544 70591590 -51252266 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1123 1139 37 7 0 chr11 70591591 70591727 -51252129 - B1_Mus1 SINE Alu -11 137 1 2 1123 418 287 54 8 chr11 70591887 70592017 -51251839 + B1F SINE Alu 1 136 -13 2 1123 516 275 79 39 chr11 70592117 70592295 -51251561 + B4A SINE B4 108 292 0 2 1123 405 0 0 0 chr11 70592634 70592679 -51251177 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 2 1123 321 135 0 0 chr11 70592679 70592731 -51251125 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1123 770 117 18 0 chr11 70592733 70592844 -51251012 - PB1D9 SINE Alu -7 113 1 2 1123 478 299 52 63 chr11 70592872 70593144 -51250712 + Charlie1b DNA MER1_type 58 329 -194 2 1123 634 279 12 12 chr11 70593144 70593307 -51250549 - RSINE1 SINE B4 0 165 3 2 1123 478 299 52 63 chr11 70593307 70593320 -51250536 + Charlie1b DNA MER1_type 330 340 -183 2 1123 221 83 0 27 chr11 70593320 70593357 -51250499 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 2 1123 717 176 15 30 chr11 70593371 70593506 -51250350 - B1_Mus1 SINE Alu -15 133 1 2 1123 897 130 19 0 chr11 70593517 70593679 -51250177 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 2 1123 1311 93 10 10 chr11 70593695 70593890 -51249966 - B2_Mm2 SINE B2 0 195 1 2 1123 780 164 43 7 chr11 70593893 70594034 -51249822 - B1_Mus2 SINE Alu -1 146 1 2 1123 797 190 190 0 chr11 70594245 70594424 -51249432 + B3 SINE B2 4 216 0 2 1123 859 188 21 42 chr11 70594499 70594688 -51249168 + B2_Mm2 SINE B2 2 186 -9 2 1123 2909 43 3 9 chr11 70594916 70595264 -51248592 + ORR1A1 LTR MaLR 1 346 0 2 1123 255 61 0 0 chr11 70595528 70595561 -51248295 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2 1123 4790 55 2 5 chr11 70595569 70596158 -51247698 + LTRIS_Mus LTR ERV1 1 587 0 2 1123 1021 115 0 7 chr11 70596299 70596448 -51247408 - B1_Mus1 SINE Alu 0 148 1 2 1123 1719 66 10 16 chr11 70596507 70596744 -51247112 + ORR1A1 LTR MaLR 141 357 -2 2 1123 779 260 17 0 chr11 70596778 70596951 -51246905 - RMER1C Other Other -687 655 480 2 1123 2635 131 22 7 chr11 70597123 70597538 -51246318 - MTC LTR MaLR 0 421 1 2 1123 676 218 13 26 chr11 70597620 70597771 -51246085 - B1_Mur1 SINE Alu 0 149 1 2 1123 740 221 122 31 chr11 70597777 70597973 -51245883 - B3 SINE B2 -1 215 2 2 1123 1344 73 39 6 chr11 70598376 70598555 -51245301 - B2_Mm2 SINE B2 -9 186 2 2 1123 868 273 127 17 chr11 70599885 70600176 -51243680 + MLT1A0 LTR MaLR 16 338 -27 2 1123 311 245 39 48 chr11 70600451 70600554 -51243302 + MTEb LTR MaLR 278 379 0 2 1123 1059 297 205 14 chr11 70600639 70600995 -51242861 + MLT-int LTR MaLR 87 494 -1241 2 1123 207 0 0 0 chr11 70600995 70601018 -51242838 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1123 1059 297 205 14 chr11 70601018 70601251 -51242605 + MLT-int LTR MaLR 495 788 -947 2 1123 252 268 0 0 chr11 70601612 70601668 -51242188 - B2_Mm2 SINE B2 -139 56 1 2 1123 901 201 116 0 chr11 70601734 70601923 -51241933 + B3 SINE B2 5 215 -1 2 1123 266 267 74 53 chr11 70602335 70602430 -51241426 - L2a LINE L2 -7 3419 3284 2 1123 463 320 25 123 chr11 70602458 70602775 -51241081 - ORR1E LTR MaLR -42 317 32 2 1123 276 77 0 0 chr11 70602811 70602850 -51241006 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 2 1123 1170 134 119 5 chr11 70604324 70604526 -51239330 + URR1A DNA MER1_type 2 226 0 2 1123 324 320 0 0 chr11 70604668 70604818 -51239038 + (CAG)n Simple_repeat Simple_repeat 3 152 0 2 1123 432 0 0 0 chr11 70605578 70605626 -51238230 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1123 452 18 0 17 chr11 70605626 70605683 -51238173 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1123 781 242 15 55 chr11 70605797 70605998 -51237858 + B3A SINE B2 6 198 0 2 1123 377 241 47 94 chr11 70606146 70606274 -51237582 + MLT1A1 LTR MaLR 287 408 0 2 1123 264 307 38 56 chr11 70606397 70606552 -51237304 + MIRb SINE MIR 50 203 -65 2 1123 621 248 0 8 chr11 70606587 70606721 -51237135 + ID_B1 SINE B4 85 217 -7 2 1123 384 216 40 0 chr11 70606722 70606796 -51237060 + B4 SINE B4 1 77 -215 2 1123 809 65 28 21 chr11 70606799 70606941 -51236915 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 2 1123 198 0 51 51 chr11 70607017 70607056 -51236800 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1123 472 264 14 35 chr11 70607056 70607201 -51236655 + MLT1B LTR MaLR 225 366 -24 2 1123 202 165 26 44 chr11 70607389 70607503 -51236353 + (CAGAGA)n Simple_repeat Simple_repeat 6 117 0 2 1123 1465 68 11 0 chr11 70607944 70608134 -51235722 - B2_Mm1t SINE B2 0 193 2 2 1123 287 256 35 47 chr11 70608297 70608383 -51235473 + MTE2a LTR MaLR 278 362 -17 2 1123 485 252 69 0 chr11 70608408 70608539 -51235317 + L1ME3A LINE L1 5736 5875 -298 2 1123 216 255 139 69 chr11 70608542 70608643 -51235213 + BC1_Mm scRNA scRNA 2 109 -43 2 1123 3155 42 44 5 chr11 70608859 70609244 -51234612 + MTB LTR MaLR 1 400 0 2 1123 225 0 0 0 chr11 70609490 70609515 -51234341 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1123 645 257 7 0 chr11 70609788 70609928 -51233928 - B1_Mur4 SINE Alu -8 142 2 3 1123 4148 2 0 0 chr11 70609950 70610399 -51233457 - L1Md_A LINE L1 0 6582 6134 3 1123 773 289 79 48 chr11 70610493 70610809 -51233047 + MER77 LTR ERVL 200 525 -82 3 1123 888 197 0 0 chr11 70610809 70610956 -51232900 + B1_Mur1 SINE Alu 2 148 -1 3 1123 819 218 46 23 chr11 70611002 70611176 -51232680 + B3 SINE B2 39 216 0 3 1123 27 76 0 12 chr11 70611885 70611903 -51231953 + AT_rich Low_complexity Low_complexity 1 18 0 3 1123 844 206 0 0 chr11 70611903 70612049 -51231807 + B1_Mus2 SINE Alu 2 147 0 3 1123 27 76 0 12 chr11 70612049 70612110 -51231746 + AT_rich Low_complexity Low_complexity 1 61 0 3 1123 1201 55 0 0 chr11 70612110 70612256 -51231600 - B1_Mm SINE Alu 0 147 2 3 1123 261 0 0 0 chr11 70612258 70612287 -51231569 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1123 417 39 0 0 chr11 70612287 70612337 -51231519 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1123 1389 80 21 0 chr11 70612381 70612569 -51231287 - B2_Mm2 SINE B2 -3 192 1 3 1123 1387 285 55 32 chr11 70613142 70613617 -51230239 - Lx6 LINE L1 -30 7430 6945 3 1123 821 268 33 0 chr11 70613640 70613823 -51230033 + Lx5 LINE L1 6186 6374 -676 3 1123 267 240 28 57 chr11 70614434 70614540 -51229316 + MIRb SINE MIR 94 196 -72 3 1123 1360 69 11 0 chr11 70614869 70615044 -51228812 + B2_Mm1t SINE B2 2 178 -15 3 1123 369 0 0 0 chr11 70615045 70615086 -51228770 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1123 1104 55 0 58 chr11 70615086 70615241 -51228615 + B1_Mm SINE Alu 2 147 0 3 1123 936 230 30 0 chr11 70615281 70615481 -51228375 - B3 SINE B2 -7 209 4 3 1123 216 280 0 0 chr11 70615990 70616040 -51227816 + PB1 SINE Alu 67 116 -11 3 1123 986 207 98 0 chr11 70616059 70616252 -51227604 + B3 SINE B2 2 213 -3 3 1123 881 285 58 56 chr11 70616260 70616673 -51227183 - MLT1D LTR MaLR -69 436 23 3 1123 396 338 78 35 chr11 70617057 70617339 -51226517 - MER2 DNA MER2_type -51 294 1 3 1123 399 221 165 0 chr11 70617598 70617725 -51226131 + B1_Mur2 SINE Alu 1 148 -1 3 1123 330 326 68 61 chr11 70617756 70617979 -51225877 - MIRb SINE MIR -29 239 10 3 1123 210 377 73 16 chr11 70619483 70619607 -51224249 + L2b LINE L2 3245 3375 0 3 1123 1387 70 32 0 chr11 70619856 70620041 -51223815 + B2_Mm1t SINE B2 2 192 -1 3 1123 576 147 91 9 chr11 70620970 70621080 -51222776 + B1_Mur1 SINE Alu 10 128 -21 3 1123 267 217 0 16 chr11 70621085 70621146 -51222710 + GA-rich Low_complexity Low_complexity 4 63 0 3 1123 478 271 70 62 chr11 70622979 70623223 -51220633 + Charlie20a DNA Charlie 38 283 -524 3 1123 681 114 17 17 chr11 70623362 70623478 -51220378 - B1_Mur2 SINE Alu 0 149 34 3 1123 293 268 0 14 chr11 70623935 70624007 -51219849 - ID4_ SINE ID -11 72 2 3 1123 606 198 8 0 chr11 70624137 70624258 -51219598 - B1_Mur2 SINE Alu -10 139 18 3 1123 196 87 64 21 chr11 70624310 70624357 -51219499 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 3 1123 923 152 0 20 chr11 70624457 70624605 -51219251 + B1_Mur4 SINE Alu 5 149 -1 3 1123 376 312 23 8 chr11 70624959 70625088 -51218768 + GA-rich Low_complexity Low_complexity 2 132 0 3 1123 912 240 9 9 chr11 70625172 70625382 -51218474 + B3 SINE B2 2 211 -5 3 1123 207 0 0 0 chr11 70626290 70626313 -51217543 + (TGAG)n Simple_repeat Simple_repeat 2 24 0 3 1123 365 294 12 0 chr11 70626551 70626636 -51217220 - PB1D10 SINE Alu -30 87 2 3 1123 420 296 29 50 chr11 70626911 70627050 -51216806 - MER63A DNA AcHobo -63 147 12 3 1123 556 219 8 8 chr11 70627305 70627425 -51216431 + PB1D9 SINE Alu 1 120 0 3 1123 1119 44 15 0 chr11 70627477 70627614 -51216242 + B1_Mus1 SINE Alu 1 139 -9 3 1123 315 0 0 0 chr11 70627614 70627649 -51216207 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1123 300 93 0 0 chr11 70627649 70627692 -51216164 + B1_Mus2 SINE Alu 99 141 -6 3 1123 220 87 0 80 chr11 70627692 70627742 -51216114 + GA-rich Low_complexity Low_complexity 4 49 0 3 1123 381 241 16 49 chr11 70628093 70628215 -51215641 - L1MA9 LINE L1 -25 6287 6170 3 1123 1131 95 0 0 chr11 70628252 70628400 -51215456 - B1_Mus1 SINE Alu 0 148 1 3 1123 1197 55 7 0 chr11 70628413 70628558 -51215298 - B1_Mus2 SINE Alu -1 146 1 3 1123 641 273 14 63 chr11 70628563 70628770 -51215086 - B3A SINE B2 -1 197 1 3 1123 293 252 0 52 chr11 70628843 70628930 -51214926 - ID4_ SINE ID -60 92 10 3 1123 437 241 148 27 chr11 70629185 70629334 -51214522 + RLTR16 LTR ERVK 1 167 -338 3 1123 818 265 25 72 chr11 70629851 70630128 -51213728 + B4A SINE B4 1 264 -28 3 1123 1222 231 129 20 chr11 70630360 70630681 -51213175 + MTD LTR MaLR 18 376 -43 3 1123 1488 214 65 57 chr11 70630681 70631052 -51212804 - ORR1D1 LTR MaLR 0 374 1 3 1123 1222 231 129 20 chr11 70631052 70631079 -51212777 + MTD LTR MaLR 377 404 -15 3 1123 451 287 70 6 chr11 70631180 70631338 -51212518 - MTD LTR MaLR -234 185 18 3 1123 279 73 0 0 chr11 70631553 70631594 -51212262 + B2_Mm2 SINE B2 1 41 -154 3 1123 3115 40 0 0 chr11 70631594 70632004 -51211852 + L1Md_T LINE L1 6213 6582 0 3 1123 638 38 0 0 chr11 70632004 70632084 -51211772 + B2_Mm2 SINE B2 27 106 -89 3 1123 280 250 0 15 chr11 70632198 70632263 -51211593 - B3 SINE B2 -152 64 1 3 1123 542 86 12 0 chr11 70632271 70632352 -51211504 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1123 1939 135 134 3 chr11 70632410 70632767 -51211089 - MTC LTR MaLR -17 404 1 3 1123 534 287 50 44 chr11 70632944 70633126 -51210730 + B3A SINE B2 1 183 -15 3 1123 24 0 0 0 chr11 70633184 70633208 -51210648 + AT_rich Low_complexity Low_complexity 1 24 0 3 1123 541 336 74 20 chr11 70633652 70634004 -51209852 + L1MC LINE L1 4533 4903 -1243 3 1123 318 281 114 75 chr11 70634022 70634249 -51209607 + L1M4 LINE L1 4801 5036 -1110 3 1123 1299 118 16 11 chr11 70634251 70634440 -51209416 + B2_Mm2 SINE B2 1 190 -5 3 1123 480 202 29 9 chr11 70634453 70634558 -51209298 + PB1D10 SINE Alu 1 107 -10 3 1123 310 318 0 12 chr11 70634565 70634699 -51209157 + L1MC LINE L1 5317 5446 -2549 3 1123 268 251 63 65 chr11 70634709 70634885 -51208971 - MTE2a LTR MaLR -21 398 242 3 1123 27 0 0 0 chr11 70635091 70635118 -51208738 + AT_rich Low_complexity Low_complexity 1 27 0 3 1123 1177 62 0 7 chr11 70635120 70635267 -51208589 - B1_Mus1 SINE Alu -2 146 1 3 1123 614 118 246 0 chr11 70636268 70636378 -51207478 + B1_Mus1 SINE Alu 1 137 -11 3 1123 1263 135 4 75 chr11 70636418 70636659 -51207197 + URR1B DNA MER1_type 1 224 -1 3 1123 2313 133 41 2 chr11 70636682 70637108 -51206748 + RLTR20A2 LTR ERVK 1 446 -105 3 1123 342 0 0 0 chr11 70637108 70637146 -51206710 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1123 2179 194 77 14 chr11 70637146 70637237 -51206619 + RLTR20A2 LTR ERVK 447 550 -1 3 1123 184 238 0 0 chr11 70637698 70637740 -51206116 - L2a LINE L2 -15 3411 3370 3 1123 207 0 0 0 chr11 70638195 70638218 -51205638 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1123 955 141 42 0 chr11 70638227 70638369 -51205487 - B1_Mus1 SINE Alu 0 148 1 3 1123 381 278 130 0 chr11 70638444 70638552 -51205304 + PB1 SINE Alu 1 122 -5 3 1123 452 242 0 29 chr11 70638552 70638654 -51205202 - PB1D9 SINE Alu -19 101 3 3 1123 2240 131 70 16 chr11 70638689 70639076 -51204780 - MTC LTR MaLR -13 408 1 3 1123 560 309 85 33 chr11 70639018 70639229 -51204627 - ID_B1 SINE B4 -1 223 2 3 1123 1231 174 14 0 chr11 70639267 70639479 -51204377 - B3 SINE B2 -1 215 1 3 1123 1239 91 0 0 chr11 70639597 70639772 -51204084 + B2_Mm2 SINE B2 1 175 -20 3 1123 195 42 0 0 chr11 70639778 70639802 -51204054 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1123 527 179 171 10 chr11 70639806 70639963 -51203893 + B2_Mm2 SINE B2 2 184 -32 3 1123 792 135 37 8 chr11 70639965 70640099 -51203757 + B1_Mus2 SINE Alu 9 146 -1 3 1123 1163 81 0 0 chr11 70640100 70640248 -51203608 + B1_Mus1 SINE Alu 1 148 0 3 1123 276 158 0 0 chr11 70640248 70640305 -51203551 + A-rich Low_complexity Low_complexity 1 57 0 3 1123 524 251 134 6 chr11 70640584 70640774 -51203082 + L1MC3 LINE L1 6448 6689 -1193 3 1123 2059 153 22 42 chr11 70640807 70641215 -51202641 + RLTR23 LTR ERV1 31 430 0 3 1123 1183 109 0 20 chr11 70641215 70641408 -51202448 + RLTR11A LTR ERVK 340 528 0 3 1123 687 216 95 117 chr11 70641477 70641566 -51202290 + B4 SINE B4 2 80 -212 3 1123 624 179 110 15 chr11 70641566 70641702 -51202154 + B1_Mur3 SINE Alu 1 149 0 3 1123 687 216 95 117 chr11 70641702 70641843 -51202013 + B4 SINE B4 81 227 -65 3 1123 227 326 79 0 chr11 70641848 70641937 -51201919 + B1F2 SINE Alu 4 99 -50 3 1123 22 35 0 0 chr11 70641975 70642004 -51201852 + AT_rich Low_complexity Low_complexity 1 29 0 3 1123 1137 68 7 26 chr11 70642014 70642149 -51201707 + B1_Mus1 SINE Alu 1 135 -13 3 1123 278 26 26 0 chr11 70642149 70642188 -51201668 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 1123 1137 68 7 26 chr11 70642188 70642203 -51201653 + B1_Mus1 SINE Alu 136 148 0 3 1123 2300 127 54 22 chr11 70643137 70643507 -51200349 + ORR1C2 LTR MaLR 1 382 -2 3 1123 891 147 7 7 chr11 70643518 70643662 -51200194 + B1_Mur4 SINE Alu 1 144 -6 3 1123 429 129 0 0 chr11 70643679 70643749 -51200107 + (GGA)n Simple_repeat Simple_repeat 3 72 0 3 1123 1256 78 0 16 chr11 70643749 70643932 -51199924 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1123 334 211 189 0 chr11 70644054 70644144 -51199712 - B3A SINE B2 -74 124 18 4 1123 948 139 0 0 chr11 70644461 70644605 -51199251 + B1_Mur4 SINE Alu 6 149 -1 4 1123 188 327 168 42 chr11 70644813 70645199 -51198657 + L2 LINE L2 1646 2080 -1339 4 1123 285 263 0 0 chr11 70645246 70645345 -51198511 + (CA)n Simple_repeat Simple_repeat 1 99 0 4 1123 236 320 26 0 chr11 70645723 70645801 -51198055 + ID4 SINE ID 3 82 -1 4 1123 180 0 0 0 chr11 70645823 70645843 -51198013 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1123 675 190 73 0 chr11 70645899 70646036 -51197820 + B1_Mur2 SINE Alu 1 147 -2 4 1123 28 61 0 0 chr11 70646088 70646137 -51197719 + AT_rich Low_complexity Low_complexity 1 49 0 4 1123 200 278 42 53 chr11 70646154 70646249 -51197607 - L2 LINE L2 -1333 2086 1993 4 1123 486 0 0 0 chr11 70646313 70646367 -51197489 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1123 1618 32 0 16 chr11 70646428 70646619 -51197237 + B2_Mm1a SINE B2 1 188 -5 4 1123 297 0 0 0 chr11 70646657 70646690 -51197166 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1123 2106 137 32 90 chr11 70646733 70646926 -51196930 - ORR1C1 LTR MaLR 0 378 177 4 1123 372 104 0 0 chr11 70646926 70646993 -51196863 + (CAGAGA)n Simple_repeat Simple_repeat 4 70 0 4 1123 2106 137 32 90 chr11 70646993 70647200 -51196656 - ORR1C1 LTR MaLR -202 176 2 4 1123 789 106 0 43 chr11 70647200 70647338 -51196518 - ORR1C1-int LTR MaLR 0 1509 1378 4 1123 789 122 43 7 chr11 70647548 70647689 -51196167 + ORR1D1 LTR MaLR 1 146 -228 4 140 592 244 8 0 chr11 70647704 70647823 -51196033 + B1_Mus2 SINE Alu 7 126 -21 4 1124 374 121 15 0 chr11 70647884 70647950 -51195906 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1124 465 211 44 33 chr11 70647963 70648147 -51195709 + ORR1D1 LTR MaLR 147 369 -1 4 1124 605 273 72 6 chr11 70648187 70648353 -51195503 + MER20 DNA MER1_type 18 194 -25 4 1124 312 206 194 10 chr11 70648374 70648472 -51195384 + BC1_Mm scRNA scRNA 5 120 -32 4 1124 1009 124 43 48 chr11 70648529 70648715 -51195141 - B2_Mm2 SINE B2 -9 186 2 4 1124 243 228 125 12 chr11 70649232 70649312 -51194544 + L1M4 LINE L1 350 438 -6104 4 1124 439 276 375 31 chr11 70649382 70649751 -51194105 + L1M4 LINE L1 555 1055 -5487 4 1124 597 233 7 40 chr11 70649751 70649903 -51193953 + B1_Mur3 SINE Alu 2 148 -1 4 1124 439 243 204 47 chr11 70649903 70649936 -51193920 + L1M4 LINE L1 1056 1089 -5453 4 1124 26 30 0 0 chr11 70650031 70650064 -51193792 + AT_rich Low_complexity Low_complexity 1 33 0 4 1124 1177 68 0 0 chr11 70650087 70650234 -51193622 + B1_Mus1 SINE Alu 2 148 0 4 1124 855 173 6 6 chr11 70650452 70650609 -51193247 + RMER10B LTR ERVL 1 157 -241 4 1124 407 268 85 27 chr11 70650616 70650804 -51193052 + L1M4 LINE L1 5341 5539 -1099 4 1124 243 0 0 0 chr11 70650828 70650855 -51193001 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1124 342 239 28 0 chr11 70650855 70650926 -51192930 - PB1D10 SINE Alu -34 83 11 4 1124 609 238 220 7 chr11 70650998 70651272 -51192584 + ORR1D1 LTR MaLR 10 341 -33 4 1124 191 36 36 0 chr11 70651275 70651303 -51192553 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1124 548 100 0 32 chr11 70651317 70651410 -51192446 - B1_Mur3 SINE Alu -16 133 44 4 1124 251 136 0 0 chr11 70651434 70651478 -51192378 + ORR1D1 LTR MaLR 331 374 0 4 1124 228 128 26 0 chr11 70651478 70651517 -51192339 + L1MD LINE L1 5135 5174 -972 4 1124 228 270 54 0 chr11 70651520 70651594 -51192262 + BC1_Mm scRNA scRNA 4 81 -71 4 1124 250 274 40 27 chr11 70651602 70651677 -51192179 + MTEa LTR MaLR 279 354 -25 4 1124 573 246 143 11 chr11 70651789 70651978 -51191878 - B3 SINE B2 -2 214 1 4 1124 338 252 8 119 chr11 70651982 70652108 -51191748 - L1M4 LINE L1 -514 5670 5559 4 1124 219 255 18 18 chr11 70652110 70652166 -51191690 - B1F1 SINE Alu -88 61 6 4 1124 827 251 79 113 chr11 70652216 70652597 -51191259 - ORR1D2 LTR MaLR -2 368 1 4 1124 1241 48 0 0 chr11 70652636 70652782 -51191074 + B1_Mus2 SINE Alu 2 147 0 4 1124 402 69 0 0 chr11 70652782 70652840 -51191016 + (A)n Simple_repeat Simple_repeat 1 58 0 4 1124 412 288 30 0 chr11 70652940 70653072 -51190784 - B1F SINE Alu -13 136 1 4 1124 1074 172 98 0 chr11 70653090 70653294 -51190562 + URR1A DNA MER1_type 1 224 -2 4 1124 583 257 112 0 chr11 70653297 70653484 -51190372 - MER2 DNA MER2_type -132 213 6 4 1124 268 247 53 27 chr11 70653553 70653628 -51190228 + MT2B LTR ERVL 181 257 -344 4 1124 752 83 0 0 chr11 70653565 70653673 -51190183 + B1_Mus2 SINE Alu 40 147 0 4 1124 1106 61 0 26 chr11 70653826 70653977 -51189879 - B1_Mus1 SINE Alu -1 147 1 4 1124 1357 51 91 0 chr11 70653981 70654156 -51189700 - B2_Mm2 SINE B2 -4 191 1 4 1124 272 241 165 9 chr11 70654215 70654324 -51189532 + B1F SINE Alu 9 134 -15 4 1124 816 276 26 40 chr11 70654393 70654665 -51189191 + B4A SINE B4 24 291 -1 4 1124 717 271 40 45 chr11 70654702 70654926 -51188930 + B4 SINE B4 8 230 -62 4 1124 267 220 0 0 chr11 70654932 70654982 -51188874 + Lx8 LINE L1 6429 6478 -995 4 1124 1871 205 56 54 chr11 70654982 70655426 -51188430 + Lx8 LINE L1 6644 7088 -385 4 1124 576 196 9 9 chr11 70655462 70655570 -51188286 + B3 SINE B2 1 108 -108 4 1124 307 260 52 30 chr11 70655616 70655751 -51188105 + Lx8 LINE L1 7333 7470 -3 4 1124 325 259 37 0 chr11 70655751 70655832 -51188024 + B4A SINE B4 201 284 -8 4 1124 271 245 208 30 chr11 70655893 70655994 -51187862 + PB1D7 SINE Alu 2 120 0 4 1124 249 238 70 23 chr11 70656015 70656101 -51187755 - L1M5 LINE L1 -482 5758 5669 4 1124 565 146 549 0 chr11 70656275 70656419 -51187437 + ID_B1 SINE B4 1 223 -1 4 1124 335 78 0 19 chr11 70657067 70657119 -51186737 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 4 1124 313 276 28 28 chr11 70657128 70657236 -51186620 + PB1D10 SINE Alu 9 116 -1 4 1124 248 220 119 0 chr11 70657254 70657313 -51186543 + ID4_ SINE ID 12 77 -6 4 1124 246 319 80 46 chr11 70657382 70657533 -51186323 - MER115 DNA Tip100 -227 466 311 4 1124 228 216 38 75 chr11 70657967 70658047 -51185809 - MIRc SINE MIR -153 115 39 4 1124 222 284 24 47 chr11 70658567 70658737 -51185119 + G-rich Low_complexity Low_complexity 2 167 0 4 1124 313 261 114 0 chr11 70659221 70659309 -51184547 - PB1 SINE Alu -13 114 17 4 1124 1215 49 0 0 chr11 70660631 70660775 -51183081 + B1_Mus1 SINE Alu 5 148 0 4 1124 23 0 0 0 chr11 70660995 70661018 -51182838 + AT_rich Low_complexity Low_complexity 1 23 0 4 1124 463 314 32 7 chr11 70661028 70661182 -51182674 - RSINE1 SINE B4 -4 161 4 4 1124 879 135 34 45 chr11 70661226 70661404 -51182452 + B2_Mm2 SINE B2 1 176 -19 4 1124 374 240 41 16 chr11 70661420 70661543 -51182313 + L1MA6 LINE L1 6135 6260 -40 4 1124 1002 159 91 15 chr11 70661553 70661751 -51182105 - B3 SINE B2 0 216 4 4 1124 1473 68 11 0 chr11 70661807 70661998 -51181858 + B2_Mm1t SINE B2 1 193 0 4 1124 1132 89 0 0 chr11 70662018 70662164 -51181692 + B1_Mus2 SINE Alu 2 147 0 4 1124 216 0 0 0 chr11 70662164 70662188 -51181668 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1124 249 304 185 20 chr11 70662394 70662545 -51181311 - MIRb SINE MIR -59 209 34 4 1124 780 224 104 0 chr11 70662677 70662869 -51180987 - B3 SINE B2 -4 212 1 4 1124 1535 58 0 31 chr11 70662871 70663067 -51180789 - B2_Mm1a SINE B2 -3 190 1 4 1124 378 261 42 34 chr11 70663077 70663196 -51180660 - PB1D7 SINE Alu 0 120 1 4 1124 439 180 19 48 chr11 70663251 70663356 -51180500 - PB1D10 SINE Alu -3 114 13 4 1124 268 250 78 29 chr11 70663269 70663372 -51180484 - ID_B1 SINE B4 -39 185 78 4 1124 392 283 41 8 chr11 70663653 70663774 -51180082 - B1F SINE Alu -21 128 4 4 1124 182 288 99 12 chr11 70663778 70663859 -51179997 - L2a LINE L2 -4 3371 3284 4 1124 580 260 105 18 chr11 70664129 70664331 -51179525 - B3A SINE B2 0 216 2 4 1124 495 274 105 35 chr11 70664340 70664636 -51179220 - L2a LINE L2 -251 3175 2865 4 1124 1286 103 43 5 chr11 70664693 70664879 -51178977 + B2_Mm2 SINE B2 3 195 0 4 1124 395 267 8 87 chr11 70664940 70665067 -51178789 + PB1D7 SINE Alu 3 119 -1 4 1124 258 234 0 45 chr11 70665466 70665533 -51178323 - BC1_Mm scRNA scRNA -73 79 16 4 1124 528 271 28 28 chr11 70665619 70665763 -51178093 - RSINE1 SINE B4 -19 146 3 4 1124 888 274 26 0 chr11 70665804 70666030 -51177826 - B4A SINE B4 -60 232 1 4 1124 757 122 29 64 chr11 70666325 70666465 -51177391 - B1_Mur4 SINE Alu -15 135 1 4 1124 238 211 236 50 chr11 70666474 70666614 -51177242 - LTR41 LTR ERVL -42 726 561 4 1124 213 309 0 0 chr11 70666613 70666681 -51177175 - B3A SINE B2 -130 68 1 4 1124 1122 75 0 33 chr11 70667161 70667313 -51176543 - B1_Mus2 SINE Alu 0 147 1 4 1124 229 231 154 0 chr11 70667440 70667505 -51176351 - MIR3 SINE MIR -31 177 103 4 1124 898 144 179 22 chr11 70667508 70667692 -51176164 + B3 SINE B2 3 215 -1 4 1124 514 276 39 8 chr11 70667914 70668042 -51175814 - B1_Mur3 SINE Alu -16 133 2 4 1124 1211 68 0 0 chr11 70668136 70668283 -51175573 - B1_Mm SINE Alu 0 147 1 4 1124 1642 232 123 39 chr11 70668354 70668643 -51175213 + L1M2 LINE L1 3396 3685 -2458 4 1124 372 196 116 45 chr11 70668643 70668755 -51175101 + PB1D9 SINE Alu 1 120 0 4 1124 1642 232 123 39 chr11 70668755 70669205 -51174651 + L1M2 LINE L1 3686 4196 -1947 4 1124 500 307 91 52 chr11 70669340 70669570 -51174286 + ORR1E LTR MaLR 67 305 -54 4 1124 724 244 91 0 chr11 70669630 70669806 -51174050 + B3 SINE B2 3 194 -22 4 1124 463 184 188 12 chr11 70670011 70670176 -51173680 + L1M2 LINE L1 4367 4560 -1583 4 1124 806 151 16 0 chr11 70670210 70670336 -51173520 + B1_Mus2 SINE Alu 4 131 -16 4 1124 804 248 67 60 chr11 70670383 70670442 -51173414 + L1M2 LINE L1 5285 5342 -958 4 1124 842 159 7 33 chr11 70670442 70670592 -51173264 - B1_Mus1 SINE Alu 0 148 3 4 1124 804 248 67 60 chr11 70670592 70670626 -51173230 + L1M2 LINE L1 5343 5365 -935 4 1124 1188 94 50 0 chr11 70670626 70670806 -51173050 + B2_Mm1t SINE B2 3 191 -2 5 1124 804 248 67 60 chr11 70670806 70671144 -51172712 + L1M2 LINE L1 5366 5720 -580 4 1124 236 221 104 0 chr11 70671162 70671239 -51172617 + L1M2 LINE L1 5798 5882 -430 4 1124 378 0 0 0 chr11 70671382 70671424 -51172432 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1124 1072 82 14 7 chr11 70671500 70671647 -51172209 - B1_Mus1 SINE Alu 0 148 1 5 1124 333 0 0 0 chr11 70672375 70672412 -51171444 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1124 657 120 89 74 chr11 70672586 70672721 -51171135 + B1_Mur3 SINE Alu 2 138 -11 5 1124 189 107 0 0 chr11 70672735 70672763 -51171093 + (GGGAA)n Simple_repeat Simple_repeat 1 28 0 5 1124 1214 49 110 0 chr11 70673188 70673351 -51170505 + B2_Mm2 SINE B2 2 182 -13 5 1124 249 33 0 0 chr11 70673351 70673381 -51170475 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1124 329 264 49 16 chr11 70673721 70673844 -51170012 - L1MC LINE L1 -2363 5422 5296 5 1124 462 224 45 45 chr11 70673852 70673964 -51169892 - PB1D9 SINE Alu -8 112 1 5 1124 475 294 42 93 chr11 70673967 70674203 -51169653 - ID_B1 SINE B4 0 224 1 5 1124 218 200 0 0 chr11 70674210 70674260 -51169596 + T-rich Low_complexity Low_complexity 1 50 0 5 1124 1145 55 0 7 chr11 70674262 70674410 -51169446 - B1_Mm SINE Alu 0 147 1 5 1124 870 261 39 34 chr11 70674411 70674827 -51169029 - L1MC LINE L1 -944 5202 4785 5 1124 1338 18 131 0 chr11 70674827 70674995 -51168861 - B2_Mm1a SINE B2 -2 191 2 5 1124 34 0 0 0 chr11 70675007 70675041 -51168815 + AT_rich Low_complexity Low_complexity 1 34 0 5 1124 474 286 34 0 chr11 70675062 70675181 -51168675 + B1_Mur1 SINE Alu 5 127 -22 5 1124 881 199 96 5 chr11 70675211 70675408 -51168448 + B3 SINE B2 2 216 0 5 1124 1127 123 31 26 chr11 70675566 70675602 -51168254 - B2_Mm2 SINE B2 -1 194 154 5 1124 270 0 0 0 chr11 70675602 70675632 -51168224 + (TATG)n Simple_repeat Simple_repeat 1 30 0 5 1124 1127 123 31 26 chr11 70675632 70675787 -51168069 - B2_Mm2 SINE B2 -42 153 3 5 1124 4693 69 122 8 chr11 70676202 70676873 -51166983 - L1_Mus3 LINE L1 0 6638 5891 5 1124 2306 124 13 0 chr11 70676875 70677261 -51166595 + L1VL4 LINE L1 509 899 -5403 5 1124 782 254 42 21 chr11 70677793 70677986 -51165870 - B3A SINE B2 0 198 2 5 1124 1167 63 0 0 chr11 70678039 70678181 -51165675 + B1_Mus1 SINE Alu 1 142 -6 5 1124 794 179 13 27 chr11 70678272 70678421 -51165435 + B1_Mus2 SINE Alu 1 147 0 5 1124 275 250 0 0 chr11 70678443 70678487 -51165369 - B1_Mus2 SINE Alu -102 45 2 5 1124 907 79 191 0 chr11 70678509 70678661 -51165195 - B2_Mm1a SINE B2 -9 184 4 5 1124 287 257 40 0 chr11 70678838 70678912 -51164944 - ID4 SINE ID -3 80 4 5 1124 462 327 153 11 chr11 70679390 70679677 -51164179 - L1M5 LINE L1 -2274 3872 3545 5 1124 883 199 82 53 chr11 70679759 70680003 -51163853 - Tigger7 DNA MER2_type -11 2480 2231 5 1124 1023 264 169 17 chr11 70679994 70680349 -51163507 - Tigger7 DNA MER2_type -2080 411 3 5 1124 529 203 160 16 chr11 70680716 70680841 -51163015 - B1_Mur1 SINE Alu -1 148 6 5 1124 269 270 191 35 chr11 70681498 70681613 -51162243 + ID_B1 SINE B4 77 209 -15 5 1124 403 226 0 89 chr11 70681518 70681630 -51162226 + PB1D9 SINE Alu 18 119 -1 5 1124 225 132 0 0 chr11 70681760 70681798 -51162058 + (CCA)n Simple_repeat Simple_repeat 3 40 0 5 1124 183 129 0 0 chr11 70681814 70681845 -51162011 + (ATG)n Simple_repeat Simple_repeat 1 31 0 5 1124 400 337 57 60 chr11 70681845 70682140 -51161716 - B4A SINE B4 -24 268 2 5 1124 807 257 163 5 chr11 70682195 70682410 -51161446 - B4 SINE B4 -41 251 3 5 1124 195 42 0 0 chr11 70683145 70683169 -51160687 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1124 329 261 14 14 chr11 70683169 70683239 -51160617 - B4A SINE B4 -217 75 6 5 1124 185 102 33 33 chr11 70683243 70683304 -51160552 + T-rich Low_complexity Low_complexity 2 62 0 5 1124 252 312 78 0 chr11 70683308 70683385 -51160471 - B1F SINE Alu -57 92 10 5 1124 696 299 28 18 chr11 70683404 70683622 -51160234 - ID_B1 SINE B4 -3 221 2 5 1124 620 193 190 43 chr11 70683641 70683825 -51160031 - B3 SINE B2 -4 212 2 5 1124 315 0 0 0 chr11 70683841 70683876 -51159980 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1124 342 0 0 0 chr11 70683876 70683913 -51159943 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1124 269 157 0 41 chr11 70684224 70684297 -51159559 + T-rich Low_complexity Low_complexity 1 70 0 5 1124 1228 41 7 0 chr11 70684299 70684446 -51159410 - B1_Mus1 SINE Alu 0 148 1 5 1124 219 250 36 0 chr11 70684577 70684633 -51159223 + CT-rich Low_complexity Low_complexity 3 60 0 5 1124 339 344 31 0 chr11 70685329 70685457 -51158399 + B1F1 SINE Alu 6 137 -12 5 1124 548 256 31 16 chr11 70686285 70686412 -51157444 - B1F SINE Alu -20 129 1 5 1124 23 0 0 0 chr11 70686576 70686599 -51157257 + AT_rich Low_complexity Low_complexity 1 23 0 5 1124 1118 42 35 0 chr11 70687150 70687292 -51156564 + B1_Mm SINE Alu 1 147 0 5 1124 21 0 0 0 chr11 70688104 70688125 -51155731 + AT_rich Low_complexity Low_complexity 1 21 0 5 1124 369 295 15 58 chr11 70688966 70689103 -51154753 + MER5A DNA MER1_type 30 160 -29 5 1124 434 286 27 0 chr11 70689102 70689214 -51154642 - MER5A DNA MER1_type -71 118 4 5 1124 230 29 59 0 chr11 70689237 70689271 -51154585 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 5 1124 1168 68 0 0 chr11 70689271 70689418 -51154438 - B1_Mus2 SINE Alu 0 147 1 5 1124 25 90 0 0 chr11 70689425 70689492 -51154364 + AT_rich Low_complexity Low_complexity 1 67 0 5 1124 510 133 200 0 chr11 70689528 70689618 -51154238 - B3 SINE B2 -107 109 2 5 1124 607 266 165 0 chr11 70689624 70689782 -51154074 - ID_B1 SINE B4 -5 219 36 5 1124 228 154 45 15 chr11 70689936 70690002 -51153854 + CT-rich Low_complexity Low_complexity 3 70 0 5 1124 566 286 223 0 chr11 70690014 70690189 -51153667 - ID_B1 SINE B4 -10 214 1 5 1124 869 191 25 6 chr11 70690522 70690685 -51153171 - B3 SINE B2 -1 215 50 5 1124 369 131 0 0 chr11 70690841 70690902 -51152954 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 5 1124 1950 192 84 12 chr11 70690916 70691444 -51152412 - RMER1B Other Other 0 1066 60 5 1124 504 314 12 43 chr11 70691470 70691633 -51152223 - RSINE1 SINE B4 0 165 8 5 1124 25 0 0 0 chr11 70692592 70692617 -51151239 + AT_rich Low_complexity Low_complexity 1 25 0 5 1124 244 333 94 0 chr11 70692677 70692773 -51151083 + B4A SINE B4 82 186 -106 5 1124 791 162 41 81 chr11 70693655 70693863 -51149993 + B3 SINE B2 1 197 -1 5 1124 628 303 48 18 chr11 70693905 70694073 -51149783 + B3 SINE B2 39 211 -5 5 1124 1433 48 0 46 chr11 70694402 70694599 -51149257 - B2_Mm2 SINE B2 -7 188 1 5 1124 26 64 0 0 chr11 70694670 70694717 -51149139 + AT_rich Low_complexity Low_complexity 1 47 0 5 1124 387 271 110 71 chr11 70694826 70695119 -51148737 + L1M4 LINE L1 3562 3874 -2272 5 1124 646 214 20 33 chr11 70695119 70695269 -51148587 + B1_Mur2 SINE Alu 2 149 0 5 1124 387 271 110 71 chr11 70695269 70695412 -51148444 + L1M4 LINE L1 3875 4015 -2131 5 1124 405 39 0 0 chr11 70695442 70695493 -51148363 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1124 913 279 51 12 chr11 70696219 70696473 -51147383 - MTEa-int LTR MaLR -1308 272 9 5 1124 622 229 248 44 chr11 70696481 70696796 -51147060 - MTEa LTR MaLR 0 379 1 5 1124 228 356 157 22 chr11 70696815 70696904 -51146952 + PB1D10 SINE Alu 1 101 -16 5 1124 388 110 10 17 chr11 70697083 70697155 -51146701 - B2_Mm2 SINE B2 -95 121 48 5 1124 1211 99 52 0 chr11 70697190 70697362 -51146494 - B2_Mm2 SINE B2 -14 181 1 5 1124 272 304 87 0 chr11 70697461 70697530 -51146326 - ID SINE ID -148 76 2 5 1124 954 212 29 10 chr11 70697821 70698030 -51145826 + B3 SINE B2 1 213 -3 5 1124 905 109 0 87 chr11 70698583 70698733 -51145123 + B1_Mur4 SINE Alu 6 142 -8 5 1124 921 232 38 19 chr11 70699826 70700037 -51143819 + B3 SINE B2 2 216 0 5 1124 445 322 130 44 chr11 70700793 70701131 -51142725 + L2a LINE L2 3054 3420 -6 5 1124 496 285 75 50 chr11 70701310 70701469 -51142387 - RSINE1 SINE B4 0 165 3 5 1124 1213 54 0 0 chr11 70701558 70701705 -51142151 - B1_Mus1 SINE Alu 0 148 2 5 1124 22 0 0 0 chr11 70701729 70701751 -51142105 + AT_rich Low_complexity Low_complexity 1 22 0 5 1124 1208 41 0 14 chr11 70701751 70701899 -51141957 + B1_Mus2 SINE Alu 1 146 -1 5 1124 24 0 0 0 chr11 70702042 70702066 -51141790 + AT_rich Low_complexity Low_complexity 1 24 0 5 1124 2603 239 50 64 chr11 70702322 70702999 -51140857 - Lx7 LINE L1 -344 7352 6654 5 1124 1104 72 0 0 chr11 70702999 70703138 -51140718 + B1_Mus2 SINE Alu 1 139 -8 5 1124 2603 239 50 64 chr11 70703138 70703259 -51140597 - Lx7 LINE L1 -1043 6653 6565 5 1124 183 129 0 0 chr11 70703262 70703293 -51140563 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 1124 1497 139 139 4 chr11 70703293 70703574 -51140282 - Lx4A LINE L1 -4 7054 6736 5 1124 776 223 11 0 chr11 70703578 70703762 -51140094 - Lx4A LINE L1 -943 6115 5930 5 1124 394 99 54 120 chr11 70703761 70703853 -51140003 - Lx4A LINE L1 -1231 5827 5742 5 1124 233 185 19 0 chr11 70703877 70703931 -51139925 - Lx8 LINE L1 -1 7472 7418 5 1124 278 214 0 103 chr11 70703981 70704059 -51139797 - B4 SINE B4 -59 233 164 5 1124 418 121 91 8 chr11 70703994 70704099 -51139757 - B1F2 SINE Alu -6 143 15 5 1124 372 256 87 36 chr11 70704099 70704237 -51139619 - RLTR23 LTR ERV1 0 430 286 5 1124 938 246 75 14 chr11 70704654 70704868 -51138988 - B4A SINE B4 -65 227 1 5 1124 816 270 26 26 chr11 70704900 70705090 -51138766 - B3A SINE B2 -7 191 2 5 1124 359 254 5 124 chr11 70705201 70705394 -51138462 - L1MC3 LINE L1 -166 7619 7450 5 1124 263 336 101 14 chr11 70705420 70705568 -51138288 - RSINE1 SINE B4 0 165 5 6 1124 474 286 113 18 chr11 70705570 70705791 -51138065 - Kanga2_a DNA Tc2 -525 363 122 6 1124 502 226 69 0 chr11 70706044 70706146 -51137710 - B1_Mur1 SINE Alu -22 127 19 6 1124 325 294 37 0 chr11 70706150 70706259 -51137597 - B1F2 SINE Alu 0 149 37 6 1124 388 280 48 0 chr11 70706428 70706553 -51137303 - B3A SINE B2 -64 134 4 6 1124 381 22 0 0 chr11 70706716 70706762 -51137094 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1124 890 164 7 0 chr11 70707486 70707632 -51136224 - B1_Mur4 SINE Alu -2 148 2 6 1124 365 206 0 0 chr11 70707666 70707729 -51136127 - ID_B1 SINE B4 -1 223 161 6 1124 215 222 19 0 chr11 70707909 70707963 -51135893 + ID4_ SINE ID 3 57 -26 6 1124 701 289 66 5 chr11 70707955 70708153 -51135703 + ID_B1 SINE B4 9 218 -6 6 1124 366 197 0 62 chr11 70708213 70708278 -51135578 - ID4 SINE ID -4 79 19 6 1124 516 339 8 0 chr11 70708397 70708527 -51135329 + RSINE1 SINE B4 2 132 -33 6 1124 310 306 78 56 chr11 70709039 70709052 -51134804 + L1M5 LINE L1 2250 2262 -3884 6 1124 487 206 155 0 chr11 70709052 70709149 -51134707 + PB1D7 SINE Alu 3 114 -6 6 1124 310 306 78 56 chr11 70709149 70709277 -51134579 + L1M5 LINE L1 2263 2394 -3752 6 1124 759 211 45 0 chr11 70709278 70709434 -51134422 + B3 SINE B2 51 213 -3 6 1124 1403 55 22 16 chr11 70709671 70709856 -51134000 + B2_Mm2 SINE B2 2 187 -8 6 1124 681 222 130 0 chr11 70710089 70710296 -51133560 - Lx8 LINE L1 -360 7113 6880 6 1124 579 202 17 8 chr11 70710320 70710440 -51133416 - RMER15-int LTR ERVL -237 4762 4642 6 1124 700 286 64 4 chr11 70710440 70710675 -51133181 - Lx8 LINE L1 -878 6595 6347 6 1124 212 228 158 0 chr11 70711155 70711212 -51132644 + PB1D9 SINE Alu 35 100 -20 6 1124 368 297 133 0 chr11 70711528 70711656 -51132200 - B1F SINE Alu -1 148 4 6 1124 197 132 26 0 chr11 70711656 70711694 -51132162 + CT-rich Low_complexity Low_complexity 1 39 0 6 1124 441 0 0 0 chr11 70711724 70711773 -51132083 + (CTCA)n Simple_repeat Simple_repeat 3 51 0 6 1124 454 143 164 12 chr11 70711773 70711859 -51131997 - B1_Mur2 SINE Alu -28 121 23 6 1124 264 296 117 58 chr11 70711774 70711928 -51131928 - ID_B1 SINE B4 -26 198 36 6 1124 1191 48 0 20 chr11 70711987 70712125 -51131731 + B1_Mm SINE Alu 1 138 -9 6 1124 198 0 0 0 chr11 70712125 70712147 -51131709 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1124 1191 48 0 20 chr11 70712147 70712158 -51131698 + B1_Mm SINE Alu 139 147 0 6 1124 204 55 0 53 chr11 70712470 70712508 -51131348 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1124 1160 32 97 0 chr11 70712508 70712663 -51131193 + B2_Mm1t SINE B2 2 171 -22 6 1124 342 133 351 1 chr11 70712693 70712818 -51131038 + B2_Mm2 SINE B2 20 191 -2 6 1124 546 276 15 15 chr11 70713122 70713258 -51130598 - RSINE1 SINE B4 -22 143 8 6 1124 420 277 36 0 chr11 70714556 70714639 -51129217 + PB1D7 SINE Alu 5 90 -30 6 1124 246 32 0 0 chr11 70714648 70714679 -51129177 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1124 1226 34 7 0 chr11 70714679 70714825 -51129031 - B1_Mus2 SINE Alu 0 147 1 6 1124 315 250 225 87 chr11 70714854 70715023 -51128833 + B3A SINE B2 2 194 -4 6 1124 1181 129 27 0 chr11 70715054 70715240 -51128616 - B2_Mm1t SINE B2 -2 191 1 6 1124 1636 27 0 0 chr11 70715748 70715935 -51127921 + B2_Mm1t SINE B2 2 188 -5 6 1124 355 193 111 22 chr11 70716006 70716096 -51127760 + BC1_Mm scRNA scRNA 3 100 -52 6 1124 1626 36 0 5 chr11 70716099 70716295 -51127561 + B2_Mm2 SINE B2 1 195 0 6 1124 446 244 149 16 chr11 70716351 70716472 -51127384 + RSINE1 SINE B4 21 157 -8 6 1124 798 64 27 0 chr11 70716522 70716632 -51127224 - B2_Mm2 SINE B2 -2 193 81 6 1124 523 225 20 47 chr11 70716880 70716895 -51126961 + ID_B1 SINE B4 80 224 0 6 1124 910 75 30 0 chr11 70716895 70717029 -51126827 + B1_Mus1 SINE Alu 11 148 0 6 1124 1309 68 17 0 chr11 70717084 70717260 -51126596 + B2_Mm2 SINE B2 9 187 -8 6 1124 22 0 0 0 chr11 70717382 70717404 -51126452 + AT_rich Low_complexity Low_complexity 1 22 0 6 1124 263 262 311 20 chr11 70718323 70718471 -51125385 - B3A SINE B2 -6 192 2 6 1124 266 305 0 12 chr11 70718585 70718668 -51125188 - ID4 SINE ID 0 83 2 6 1124 463 267 0 0 chr11 70719098 70719203 -51124653 + PB1D10 SINE Alu 2 106 -11 6 1124 824 241 25 65 chr11 70719283 70719483 -51124373 + B3 SINE B2 1 192 -24 6 1124 198 0 0 0 chr11 70719619 70719641 -51124215 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1124 923 81 87 14 chr11 70719643 70719781 -51124075 - B1_Mus1 SINE Alu 0 148 1 6 1124 198 287 88 52 chr11 70720208 70720344 -51123512 - MIRb SINE MIR -29 239 99 6 1124 717 12 0 0 chr11 70720640 70720722 -51123134 + (TTCTC)n Simple_repeat Simple_repeat 2 83 0 6 1124 558 0 0 0 chr11 70720722 70720783 -51123073 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 6 1124 1384 67 11 0 chr11 70720783 70720961 -51122895 - B2_Mm2 SINE B2 -15 180 1 6 1124 1568 21 32 16 chr11 70720983 70721173 -51122683 - B2_Mm1a SINE B2 0 193 1 6 1124 307 286 43 11 chr11 70721396 70721488 -51122368 - PB1D10 SINE Alu 0 117 23 6 1124 1623 183 155 19 chr11 70722151 70722513 -51121343 - MTD LTR MaLR -4 415 5 6 1124 237 211 0 0 chr11 70723452 70723509 -51120347 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1124 893 202 109 0 chr11 70723517 70723700 -51120156 - B3 SINE B2 -11 205 3 6 1124 367 280 29 29 chr11 70723765 70723868 -51119988 - PB1 SINE Alu -13 114 12 6 1124 816 251 15 71 chr11 70724231 70724330 -51119526 - B3A SINE B2 -12 186 93 6 1124 1484 55 44 0 chr11 70724330 70724490 -51119366 + B2_Mm1t SINE B2 1 160 -33 6 1124 351 0 0 0 chr11 70724490 70724529 -51119327 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1124 1484 55 44 0 chr11 70724529 70724550 -51119306 + B2_Mm1t SINE B2 161 189 -4 6 1124 816 251 15 71 chr11 70724550 70724647 -51119209 - B3A SINE B2 -106 92 1 6 1124 416 312 112 0 chr11 70724706 70724831 -51119025 - RSINE1 SINE B4 -24 141 3 6 1124 227 271 102 0 chr11 70725189 70725248 -51118608 + ID4 SINE ID 15 79 -4 6 1124 189 0 0 0 chr11 70725442 70725463 -51118393 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 6 1124 305 194 29 29 chr11 70725794 70725863 -51117993 + ID4_ SINE ID 4 72 -11 6 1124 243 0 0 0 chr11 70725884 70725911 -51117945 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1124 483 283 26 0 chr11 70726319 70726432 -51117424 - PB1D10 SINE Alu -1 116 1 6 1124 750 274 161 18 chr11 70726801 70727080 -51116776 - MER74B LTR ERVL -248 374 56 6 1124 513 115 0 0 chr11 70727344 70727422 -51116434 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 6 1124 1042 89 0 14 chr11 70727422 70727570 -51116286 - B2_Mm2 SINE B2 -49 146 1 6 1124 860 196 135 21 chr11 70727673 70727866 -51115990 - B3 SINE B2 0 216 2 6 1124 23 0 0 0 chr11 70727930 70727953 -51115903 + AT_rich Low_complexity Low_complexity 1 23 0 6 1124 1392 91 32 0 chr11 70728161 70728348 -51115508 - B2_Mm1t SINE B2 0 193 1 6 1124 603 236 0 9 chr11 70728398 70728505 -51115351 + PB1D9 SINE Alu 2 107 -13 6 1124 688 216 225 11 chr11 70728536 70728714 -51115142 + B3 SINE B2 1 216 0 6 1124 987 230 54 0 chr11 70728739 70728943 -51114913 - B3 SINE B2 0 216 2 6 1124 770 146 32 65 chr11 70729199 70729353 -51114503 - B1F2 SINE Alu 0 149 1 6 1124 399 21 0 0 chr11 70729560 70729608 -51114248 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1124 198 0 0 0 chr11 70729608 70729630 -51114226 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1124 617 218 15 2 chr11 70729942 70730072 -51113784 - B1_Mur2 SINE Alu -1 148 19 6 1124 225 336 0 103 chr11 70730115 70730251 -51113605 + L2 LINE L2 2380 2501 -918 6 1124 989 98 0 43 chr11 70730368 70730506 -51113350 + B1_Mus1 SINE Alu 3 134 -14 6 1124 180 0 0 0 chr11 70730539 70730559 -51113297 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1124 387 169 0 0 chr11 70730689 70730760 -51113096 + (TATG)n Simple_repeat Simple_repeat 2 72 0 6 1124 487 210 80 95 chr11 70731315 70731452 -51112404 - ID_B1 SINE B4 0 224 90 6 1124 1002 111 13 34 chr11 70731872 70732021 -51111835 + B1_Mm SINE Alu 2 147 0 6 1124 398 246 95 22 chr11 70732038 70732175 -51111681 - MIRc SINE MIR -15 253 107 6 1124 254 209 29 15 chr11 70734120 70734188 -51109668 + MIRc SINE MIR 194 262 -6 6 1124 348 152 0 0 chr11 70734243 70734302 -51109554 + ID4 SINE ID 2 60 -23 6 1124 1040 218 34 10 chr11 70734625 70734833 -51109023 - B3 SINE B2 0 216 4 6 1124 239 0 32 0 chr11 70734913 70734944 -51108912 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1124 899 278 29 0 chr11 70735001 70735210 -51108646 + ID_B1 SINE B4 3 217 -7 6 1124 291 212 136 0 chr11 70735218 70735284 -51108572 + RSINE1 SINE B4 3 77 -88 6 1124 306 344 10 0 chr11 70735284 70735380 -51108476 + C-rich Low_complexity Low_complexity 5 101 0 6 1124 291 191 0 0 chr11 70735386 70735449 -51108407 + (CAT)n Simple_repeat Simple_repeat 3 65 0 6 1124 592 141 20 10 chr11 70735449 70735549 -51108307 - B1_Mur2 SINE Alu -7 142 42 6 1124 316 0 0 43 chr11 70735666 70735712 -51108144 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 6 1124 826 164 7 22 chr11 70735712 70735849 -51108007 - B1_Mus2 SINE Alu -12 135 1 6 1124 665 218 57 50 chr11 70736162 70736302 -51107554 - RSINE1 SINE B4 -23 142 2 7 1124 305 111 37 0 chr11 70736322 70736376 -51107480 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 7 1124 387 262 24 12 chr11 70737883 70737968 -51105888 + RSINE1 SINE B4 75 160 -5 6 1124 235 276 56 33 chr11 70738062 70738152 -51105704 - L1MC4 LINE L1 -124 7918 7827 7 1124 553 231 0 37 chr11 70738152 70738260 -51105596 - B3 SINE B2 -109 107 4 7 1124 243 164 89 18 chr11 70738427 70738483 -51105373 + B1F1 SINE Alu 90 149 0 7 1124 22 35 0 0 chr11 70738586 70738615 -51105241 + AT_rich Low_complexity Low_complexity 1 29 0 7 1124 1326 34 0 0 chr11 70738619 70738765 -51105091 - B1_Mm SINE Alu -1 146 1 7 1124 359 317 110 65 chr11 70738956 70739111 -51104745 + RSINE1 SINE B4 2 163 -2 7 1124 267 286 62 39 chr11 70739578 70739699 -51104157 - PB1D10 SINE Alu -24 124 5 7 1124 290 223 6 45 chr11 70739631 70739709 -51104147 - B4A SINE B4 -135 157 79 7 1124 730 204 220 6 chr11 70739741 70739914 -51103942 + B3 SINE B2 1 210 -6 7 1124 537 173 101 57 chr11 70740031 70740190 -51103666 - L1MB8 LINE L1 -274 5904 5739 7 1124 247 239 41 27 chr11 70740208 70740281 -51103575 - L1MB8 LINE L1 -510 5668 5595 7 1124 358 310 89 2 chr11 70740469 70740677 -51103179 - Lx8 LINE L1 -353 6640 6395 7 1124 823 157 67 7 chr11 70740763 70740898 -51102958 - B1_Mur2 SINE Alu -5 144 2 7 1124 1197 68 7 0 chr11 70740912 70741059 -51102797 - B1_Mus1 SINE Alu 0 148 1 7 1124 1353 47 134 0 chr11 70741066 70741238 -51102618 - B2_Mm2 SINE B2 0 195 1 7 1124 414 258 47 77 chr11 70741242 70741611 -51102245 - Lx8 LINE L1 -696 6306 5965 7 1124 629 201 289 20 chr11 70741631 70741907 -51101949 - MTEa LTR MaLR 0 379 4 7 1124 460 304 95 26 chr11 70742014 70742392 -51101464 - Lx8 LINE L1 -1426 5419 5016 7 1124 499 115 316 9 chr11 70742398 70742512 -51101344 - B2_Mm2 SINE B2 0 195 47 7 1124 1112 114 72 0 chr11 70742564 70742730 -51101126 - B2_Mm1t SINE B2 -14 179 2 7 1124 511 210 190 69 chr11 70742730 70743009 -51100847 - Lx8 LINE L1 -1890 4952 4651 7 1124 319 229 70 40 chr11 70743080 70743180 -51100676 + B3A SINE B2 96 198 0 7 1124 918 166 20 7 chr11 70743189 70743335 -51100521 + B1_Mur2 SINE Alu 1 148 -1 7 1124 501 219 80 114 chr11 70743361 70743624 -51100232 + L1M2 LINE L1 3492 3745 -2398 7 1124 1097 214 23 19 chr11 70743627 70743841 -51100015 + B3 SINE B2 2 216 0 7 1124 799 236 7 0 chr11 70743858 70744002 -51099854 + B3 SINE B2 1 145 -71 7 1124 230 0 33 0 chr11 70744020 70744050 -51099806 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1124 380 214 121 35 chr11 70744074 70744190 -51099666 + L1M2 LINE L1 3815 3940 -2200 7 1124 534 295 33 7 chr11 70744274 70744424 -51099432 + B4A SINE B4 68 221 -71 7 1124 1107 55 0 0 chr11 70744434 70744562 -51099294 - B1_Mus2 SINE Alu -19 128 1 7 1124 308 235 147 0 chr11 70744568 70744689 -51099167 - Lx8 LINE L1 -4083 2505 2364 7 1124 240 35 0 0 chr11 70744756 70744785 -51099071 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7 1124 545 55 27 0 chr11 70744786 70744859 -51098997 - B2_Mm2 SINE B2 -41 154 80 7 1124 467 178 0 72 chr11 70744991 70745088 -51098768 + PB1D9 SINE Alu 30 119 -1 7 1124 741 265 73 2 chr11 70745119 70745374 -51098482 - L1M4 LINE L1 -647 5547 5273 7 1124 1235 61 0 0 chr11 70745391 70745538 -51098318 - B1_Mus1 SINE Alu 0 148 2 7 1124 513 84 0 0 chr11 70745621 70745692 -51098164 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1124 225 0 0 0 chr11 70745693 70745718 -51098138 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 7 1124 263 289 33 11 chr11 70746157 70746248 -51097608 + RSINE1 SINE B4 1 93 -72 7 1124 777 186 7 27 chr11 70746351 70746500 -51097356 + B1F SINE Alu 1 146 -3 7 1124 536 231 53 23 chr11 70746867 70747000 -51096856 + B1F SINE Alu 5 141 -8 7 1124 243 0 0 0 chr11 70747100 70747127 -51096729 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1124 213 94 0 0 chr11 70747127 70747159 -51096697 + (CTAG)n Simple_repeat Simple_repeat 3 34 0 7 1124 558 182 202 0 chr11 70747238 70747337 -51096519 + PB1D9 SINE Alu 2 120 0 7 1124 867 26 256 0 chr11 70747599 70747716 -51096140 + B1_Mus2 SINE Alu 1 147 0 7 1124 364 209 110 37 chr11 70749667 70749776 -51094080 + PB1D10 SINE Alu 1 117 0 7 1124 216 171 0 24 chr11 70749953 70749995 -51093861 + ID4_ SINE ID 2 42 -41 7 1124 252 247 90 64 chr11 70750083 70750161 -51093695 - ID4_ SINE ID -2 81 2 7 1124 566 182 3 29 chr11 70751162 70751281 -51092575 + B1_Mur2 SINE Alu 2 119 -1 7 1124 634 281 40 45 chr11 70751285 70751483 -51092373 + B3 SINE B2 1 197 -19 7 1124 25 0 0 0 chr11 70751483 70751508 -51092348 + AT_rich Low_complexity Low_complexity 1 25 0 7 1124 389 253 351 0 chr11 70751720 70751874 -51091982 + B3 SINE B2 2 209 -7 7 1124 316 277 74 81 chr11 70751926 70752075 -51091781 + B1F SINE Alu 2 149 0 7 1124 434 171 0 14 chr11 70752097 70752168 -51091688 + ID4_ SINE ID 1 70 -13 7 1124 473 282 0 39 chr11 70752576 70752705 -51091151 + RSINE1 SINE B4 3 126 -39 7 1124 589 232 136 40 chr11 70752749 70752947 -51090909 + ID_B1 SINE B4 1 217 -7 7 1124 212 0 36 0 chr11 70752948 70752976 -51090880 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 7 1124 321 333 71 0 chr11 70752997 70753096 -51090760 + RSINE1 SINE B4 43 148 -17 7 1124 338 195 54 54 chr11 70753182 70753274 -51090582 + BC1_Mm scRNA scRNA 2 93 -59 7 1124 27 73 0 0 chr11 70756575 70756630 -51087226 + AT_rich Low_complexity Low_complexity 1 55 0 7 1124 907 117 47 0 chr11 70756889 70757017 -51086839 - B1_Mur3 SINE Alu -13 136 3 7 1124 3079 44 19 0 chr11 70759491 70759851 -51084005 + L1_Mus2 LINE L1 6200 6566 0 7 1124 458 279 53 20 chr11 70759937 70760087 -51083769 - RSINE1 SINE B4 -6 159 5 7 1124 1206 62 7 14 chr11 70760233 70760381 -51083475 + B1_Mus2 SINE Alu 1 147 0 7 1124 240 176 19 38 chr11 70760940 70760993 -51082863 + B1_Mur1 SINE Alu 98 149 0 7 1124 461 307 75 35 chr11 70762069 70762268 -51081588 - B4A SINE B4 -84 208 2 7 1124 267 239 117 3 chr11 70762455 70762526 -51081330 + ID2 SINE ID 9 85 -67 7 1124 248 218 22 15 chr11 70762673 70762740 -51081116 - B3 SINE B2 -119 74 3 7 1124 184 292 101 47 chr11 70763114 70763283 -51080573 + L2 LINE L2 2414 2591 -828 7 1124 741 249 69 55 chr11 70763873 70764162 -51079694 + Lx8 LINE L1 7179 7471 -2 7 1124 316 255 71 10 chr11 70764174 70764273 -51079583 - L1M4 LINE L1 -2083 4063 3959 7 1124 295 281 66 42 chr11 70764531 70764698 -51079158 - L1M4 LINE L1 -2810 3336 3166 7 1124 1221 75 0 0 chr11 70765039 70765185 -51078671 - B1_Mus1 SINE Alu -2 146 1 7 1124 1295 123 37 11 chr11 70765219 70765408 -51078448 + B2_Mm2 SINE B2 2 195 0 7 1124 248 36 51 51 chr11 70766380 70766398 -51077458 + (CAAAA)n Simple_repeat Simple_repeat 2 19 0 7 1124 912 145 87 0 chr11 70766398 70766536 -51077320 + B1_Mur4 SINE Alu 1 150 0 7 1124 248 36 51 51 chr11 70766536 70766576 -51077280 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 7 1124 201 74 0 0 chr11 70766888 70766915 -51076941 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1124 465 291 67 7 chr11 70766926 70767061 -51076795 - RSINE1 SINE B4 -21 144 2 7 1124 618 201 264 22 chr11 70767062 70767240 -51076616 - ID_B1 SINE B4 0 224 4 7 1124 774 170 234 0 chr11 70767258 70767429 -51076427 + B3 SINE B2 1 211 -5 7 1124 468 0 0 0 chr11 70767749 70767801 -51076055 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1124 863 150 64 0 chr11 70768427 70768567 -51075289 + B1_Mur2 SINE Alu 1 149 0 7 1124 343 305 60 66 chr11 70768587 70768606 -51075250 + ID_B1 SINE B4 67 216 -8 7 1124 445 268 45 38 chr11 70768606 70768738 -51075118 + B1F2 SINE Alu 9 141 -8 7 1124 1426 96 5 0 chr11 70768749 70768936 -51074920 + B2_Mm1t SINE B2 2 189 -4 7 1124 433 176 147 9 chr11 70768961 70769070 -51074786 + B3 SINE B2 12 135 -81 7 1124 892 235 49 5 chr11 70769176 70769360 -51074496 - B3 SINE B2 -24 192 1 7 1124 1126 180 75 0 chr11 70770213 70770413 -51073443 + B3 SINE B2 2 216 0 7 1124 348 330 20 0 chr11 70770430 70770530 -51073326 - PB1D10 SINE Alu -13 104 3 7 1124 268 291 25 0 chr11 70770530 70770609 -51073247 + L2 LINE L2 1953 2033 -1386 7 1124 625 259 0 87 chr11 70770657 70770818 -51073038 - B1_Mur3 SINE Alu -2 147 1 7 1124 405 0 0 0 chr11 70771017 70771062 -51072794 + (CCA)n Simple_repeat Simple_repeat 3 47 0 7 1124 295 302 94 0 chr11 70772116 70772212 -51071644 - L2a LINE L2 0 3426 3322 7 1124 332 296 50 20 chr11 70772269 70772369 -51071487 - PB1D7 SINE Alu 0 120 18 7 1124 246 390 0 0 chr11 70772324 70772401 -51071455 - ID_B1 SINE B4 -83 141 65 7 1124 362 259 24 0 chr11 70772501 70772586 -51071270 + RSINE1 SINE B4 18 104 -61 7 1124 466 227 128 62 chr11 70772802 70773088 -51070768 + RLTR15 LTR ERVK 45 329 -30 7 1124 1622 62 0 10 chr11 70773203 70773398 -51070458 - B2_Mm2 SINE B2 -2 193 1 7 1124 243 0 0 0 chr11 70773605 70773632 -51070224 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1124 684 142 106 38 chr11 70773632 70773764 -51070092 - B1_Mur4 SINE Alu -9 141 1 7 1124 254 210 24 12 chr11 70774513 70774567 -51069289 + A-rich Low_complexity Low_complexity 5 59 0 7 1124 1045 161 0 0 chr11 70774567 70774716 -51069140 + B1_Mur3 SINE Alu 1 149 0 7 1124 254 210 24 12 chr11 70774716 70774743 -51069113 + A-rich Low_complexity Low_complexity 60 86 0 7 1124 341 263 15 113 chr11 70775196 70775329 -51068527 + PB1D7 SINE Alu 1 120 0 7 1124 846 256 20 0 chr11 70775398 70775593 -51068263 + B3 SINE B2 18 216 0 8 1124 507 47 0 0 chr11 70775674 70775738 -51068118 - B1_Mus2 SINE Alu -82 65 2 8 1124 259 267 117 0 chr11 70775899 70775959 -51067897 - ID4_ SINE ID -10 73 7 8 1124 569 152 43 0 chr11 70776293 70776385 -51067471 + B1_Mur3 SINE Alu 44 139 -10 8 1124 429 248 204 18 chr11 70776460 70776611 -51067245 - B3A SINE B2 -51 165 1 8 1124 907 176 0 13 chr11 70776798 70776948 -51066908 + B1_Mur2 SINE Alu 2 149 0 8 1124 1209 106 67 6 chr11 70777560 70777742 -51066114 + B2_Mm2 SINE B2 1 193 -2 8 1124 617 286 32 25 chr11 70777866 70778024 -51065832 + RSINE1 SINE B4 3 161 -4 8 1124 25 0 0 0 chr11 70778534 70778559 -51065297 + AT_rich Low_complexity Low_complexity 1 25 0 8 1124 412 175 245 25 chr11 70778593 70778687 -51065169 - PB1D9 SINE Alu 0 120 6 8 1124 1184 62 7 0 chr11 70778714 70778860 -51064996 - B1_Mm SINE Alu 0 147 1 8 1125 352 224 35 0 chr11 70778979 70779064 -51064792 + PB1D9 SINE Alu 23 110 -10 8 1125 523 243 33 46 chr11 70779510 70779661 -51064195 - B1F1 SINE Alu 0 149 1 8 1125 4697 27 6 4 chr11 70780416 70780966 -51062890 + L1Md_F3 LINE L1 6030 6580 -4 8 1125 597 242 93 6 chr11 70781009 70781192 -51062664 + B3 SINE B2 1 199 -17 8 1125 25 31 0 0 chr11 70781539 70781571 -51062285 + AT_rich Low_complexity Low_complexity 1 32 0 8 1125 422 212 23 12 chr11 70781686 70781772 -51062084 + B3A SINE B2 5 91 -107 8 1125 180 0 0 0 chr11 70781785 70781805 -51062051 + (TC)n Simple_repeat Simple_repeat 1 20 0 8 1125 365 219 37 41 chr11 70781842 70782003 -51061853 + B3 SINE B2 36 195 0 8 1125 278 299 51 10 chr11 70782264 70782362 -51061494 + PB1D9 SINE Alu 2 103 -17 8 1125 490 221 99 0 chr11 70782708 70782839 -51061017 + B1_Mur4 SINE Alu 1 144 -6 8 1125 467 211 135 0 chr11 70782954 70783058 -51060798 + B1F SINE Alu 13 130 -19 8 1125 192 77 0 0 chr11 70783631 70783657 -51060199 + (CGGGG)n Simple_repeat Simple_repeat 3 28 0 8 1125 453 291 25 81 chr11 70784582 70784743 -51059113 - MER20 DNA MER1_type -1 218 67 8 1125 457 263 17 0 chr11 70784822 70784940 -51058916 + B3 SINE B2 97 216 0 8 1125 311 134 58 29 chr11 70786432 70786501 -51057355 - ID4 SINE ID -11 72 2 8 1125 261 306 71 43 chr11 70786713 70786853 -51057003 + B1F SINE Alu 1 144 -5 8 1125 1233 41 0 7 chr11 70787024 70787172 -51056684 - B1_Mus1 SINE Alu 0 148 2 8 1125 187 205 26 0 chr11 70787235 70787274 -51056582 + MIRc SINE MIR 133 172 -96 8 1125 968 187 26 16 chr11 70787890 70788080 -51055776 - B3 SINE B2 -24 192 1 8 1125 654 244 89 10 chr11 70788082 70788285 -51055571 - ID_B1 SINE B4 -1 223 5 8 1125 425 231 58 0 chr11 70788679 70788783 -51055073 + PB1D10 SINE Alu 1 110 -7 8 1125 544 247 74 20 chr11 70788791 70788940 -51054916 + RSINE1 SINE B4 4 160 -5 8 1125 610 266 133 28 chr11 70789659 70789907 -51053949 + B4A SINE B4 10 283 -9 8 1125 606 208 31 39 chr11 70789990 70790120 -51053736 - B1_Mur2 SINE Alu -8 141 13 8 1125 495 220 7 108 chr11 70790102 70790131 -51053725 - MT2B LTR ERVL -314 287 197 8 1125 816 65 9 0 chr11 70790131 70790239 -51053617 - B1_Mus1 SINE Alu -38 110 2 8 1125 495 220 7 108 chr11 70790239 70790250 -51053606 - MT2B LTR ERVL -314 196 155 8 1125 412 267 51 8 chr11 70790388 70790505 -51053351 + PB1 SINE Alu 1 122 -5 8 1125 1232 27 7 0 chr11 70792891 70793037 -51050819 + B1_Mus1 SINE Alu 2 148 0 8 1125 385 271 9 18 chr11 70793053 70793162 -51050694 + RSINE1 SINE B4 3 110 -55 8 1125 674 212 14 7 chr11 70794326 70794464 -51049392 - B1_Mur3 SINE Alu 0 149 11 8 1125 231 268 104 139 chr11 70794471 70794500 -51049356 - ID_B1 SINE B4 -30 194 167 8 1125 1107 57 43 0 chr11 70794500 70794641 -51049215 - B1_Mm SINE Alu 0 147 1 8 1125 231 268 104 139 chr11 70794641 70794784 -51049072 - ID_B1 SINE B4 -58 166 28 8 1125 330 276 56 84 chr11 70794872 70794979 -51048877 + PB1D10 SINE Alu 7 110 -7 8 1125 1174 68 0 0 chr11 70795381 70795527 -51048329 + B1_Mus2 SINE Alu 2 147 0 8 1125 1065 98 98 0 chr11 70796992 70797165 -51046691 + L1_Mus3 LINE L1 6449 6638 0 8 1125 684 194 24 0 chr11 70797175 70797299 -51046557 + B3 SINE B2 1 127 -89 8 1125 207 0 0 0 chr11 70797366 70797389 -51046467 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1125 514 232 63 8 chr11 70797437 70797563 -51046293 + B1_Mus2 SINE Alu 15 147 0 8 1125 220 243 143 0 chr11 70799185 70799255 -51044601 - B1F1 SINE Alu -60 89 10 8 1125 260 271 29 22 chr11 70799432 70799461 -51044395 + ORR1B1-int LTR MaLR 618 647 -862 8 1125 892 132 0 7 chr11 70799461 70799598 -51044258 + B1_Mus1 SINE Alu 3 138 -10 8 1125 300 169 17 17 chr11 70800080 70800140 -51043716 + ID4_ SINE ID 2 61 -22 8 1125 196 278 133 42 chr11 70800291 70800411 -51043445 - MIRb SINE MIR -27 241 111 8 1125 330 152 0 0 chr11 70801203 70801262 -51042594 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 8 1125 588 186 20 0 chr11 70802014 70802116 -51041740 - PB1D9 SINE Alu -2 118 15 8 1125 367 176 21 124 chr11 70802046 70802143 -51041713 - MT2B LTR ERVL -360 241 155 8 1125 599 221 0 155 chr11 70803607 70803800 -51040056 + RSINE1 SINE B4 3 165 0 8 1125 549 278 71 0 chr11 70804125 70804251 -51039605 + RSINE1 SINE B4 3 137 -28 8 1125 467 136 161 0 chr11 70804266 70804347 -51039509 + B1_Mus1 SINE Alu 24 117 -31 8 1125 529 105 105 0 chr11 70804355 70804431 -51039425 + B1_Mur4 SINE Alu 55 138 -12 8 1125 315 0 0 0 chr11 70804431 70804466 -51039390 + (CAAAC)n Simple_repeat Simple_repeat 4 38 0 8 1125 378 267 101 22 chr11 70804483 70804621 -51039235 + B1_Mur1 SINE Alu 1 149 0 8 1125 490 249 133 17 chr11 70804633 70804813 -51039043 + B3 SINE B2 1 201 -15 8 1125 1224 41 14 0 chr11 70805049 70805194 -51038662 - B1_Mus1 SINE Alu 0 148 2 8 1125 180 0 0 0 chr11 70805195 70805215 -51038641 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1125 316 257 0 0 chr11 70805219 70805289 -51038567 + PB1D9 SINE Alu 13 82 -38 8 1125 203 167 0 0 chr11 70805495 70805537 -51038319 + GA-rich Low_complexity Low_complexity 1 42 0 8 1125 222 150 0 0 chr11 70807064 70807104 -51036752 + (CCTG)n Simple_repeat Simple_repeat 3 42 0 8 1125 259 273 152 61 chr11 70808967 70809140 -51034716 + MIRb SINE MIR 5 190 -86 8 1125 585 250 36 60 chr11 70809828 70809994 -51033862 + RSINE1 SINE B4 4 165 0 8 1125 793 94 9 0 chr11 70810040 70810146 -51033710 - U6 snRNA snRNA 0 107 1 8 1125 398 307 70 103 chr11 70810313 70810469 -51033387 + RSINE1 SINE B4 15 165 0 8 1125 24 32 0 0 chr11 70810500 70810531 -51033325 + AT_rich Low_complexity Low_complexity 1 31 0 8 1125 642 167 10 0 chr11 70811226 70811328 -51032528 - B1_Mus1 SINE Alu -45 103 1 8 1125 691 269 98 10 chr11 70811367 70811570 -51032286 - ID_B1 SINE B4 -2 222 2 8 1125 1392 66 22 0 chr11 70811638 70811819 -51032037 + B2_Mm1a SINE B2 2 186 -7 8 1125 22 0 0 0 chr11 70811844 70811866 -51031990 + AT_rich Low_complexity Low_complexity 1 22 0 8 1125 484 279 259 30 chr11 70811928 70812164 -51031692 - B4A SINE B4 0 292 3 8 1125 32 26 0 0 chr11 70812179 70812218 -51031638 + AT_rich Low_complexity Low_complexity 1 39 0 8 1125 355 304 39 10 chr11 70812246 70812258 -51031598 + ID SINE ID 70 84 -140 8 1125 447 290 0 0 chr11 70812258 70812351 -51031505 + PB1D10 SINE Alu 4 96 -21 8 1125 252 0 0 0 chr11 70812589 70812617 -51031239 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 8 1125 505 186 85 0 chr11 70812617 70812735 -51031121 - RSINE1 SINE B4 -35 130 3 8 1125 415 307 92 7 chr11 70813632 70813773 -51030083 + RSINE1 SINE B4 3 155 -10 8 1125 521 221 109 8 chr11 70813903 70814031 -51029825 + B1F2 SINE Alu 4 144 -5 8 1125 238 237 135 63 chr11 70813923 70814049 -51029807 - YREP_Mm Unknown Unknown -1518 294 160 8 1125 303 241 0 0 chr11 70814112 70814170 -51029686 + ID4_ SINE ID 15 72 -11 8 1125 253 273 29 43 chr11 70814113 70814182 -51029674 + B4A SINE B4 16 83 -209 8 1125 3794 14 121 0 chr11 70814304 70814744 -51029112 + MT2_Mm LTR ERVL 1 493 0 8 1125 399 265 10 39 chr11 70814794 70814896 -51028960 + B1F1 SINE Alu 1 99 -50 8 1125 607 201 73 15 chr11 70815377 70815513 -51028343 + B1_Mur2 SINE Alu 2 145 -4 8 1125 1158 69 7 0 chr11 70815987 70816132 -51027724 - B1_Mus2 SINE Alu -1 146 1 8 1125 523 232 82 44 chr11 70818745 70818903 -51024953 - B3 SINE B2 -4 212 49 8 1125 1568 47 0 30 chr11 70818934 70819133 -51024723 - B2_Mm1a SINE B2 0 193 1 8 1125 189 0 0 0 chr11 70819240 70819261 -51024595 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1125 472 333 58 30 chr11 70819681 70819892 -51023964 + B3A SINE B2 1 216 0 8 1125 367 293 64 7 chr11 70820148 70820289 -51023567 - RSINE1 SINE B4 -4 161 13 8 1125 190 260 64 64 chr11 70820316 70820394 -51023462 + L3 LINE CR1 75 152 -4337 8 1125 486 237 69 99 chr11 70820951 70821279 -51022577 - L2a LINE L2 -6 3420 3083 8 1125 376 306 126 0 chr11 70824136 70824342 -51019514 + L1MB3 LINE L1 5925 6156 -27 9 1125 890 157 7 0 chr11 70824535 70824675 -51019181 - B1_Mus2 SINE Alu -6 141 1 9 1125 896 212 33 56 chr11 70824730 70824945 -51018911 + B3 SINE B2 1 210 -6 9 1125 327 272 48 77 chr11 70824991 70825208 -51018648 + Lx9 LINE L1 7263 7467 -6 9 1125 1091 43 7 0 chr11 70825317 70825455 -51018401 + B1_Mus2 SINE Alu 9 147 0 9 1125 328 304 98 0 chr11 70825494 70825596 -51018260 - PB1 SINE Alu -10 117 6 9 1125 608 229 20 109 chr11 70825636 70825837 -51018019 - B2_Mm2 SINE B2 0 195 13 9 1125 1062 102 7 0 chr11 70826016 70826163 -51017693 + B1_Mus1 SINE Alu 1 148 0 9 1125 1133 96 84 0 chr11 70827374 70827540 -51016316 - B2_Mm2 SINE B2 -14 181 2 9 1125 354 45 0 0 chr11 70829479 70829523 -51014333 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1125 217 299 121 44 chr11 70829919 70830010 -51013846 - MIRc SINE MIR -90 178 81 9 1125 236 234 182 16 chr11 70830053 70830179 -51013677 + B1F SINE Alu 1 147 -2 9 1125 1066 243 106 22 chr11 70830446 70830766 -51013090 + MTEa LTR MaLR 28 374 -5 9 1125 197 159 0 22 chr11 70831298 70831343 -51012513 + (TTG)n Simple_repeat Simple_repeat 2 45 0 9 1125 318 265 0 28 chr11 70833802 70833905 -51009951 + PB1 SINE Alu 1 102 -25 9 1125 450 273 155 11 chr11 70835029 70835203 -51008653 + B3 SINE B2 13 211 -5 9 1125 1201 41 7 0 chr11 70835228 70835373 -51008483 + B1_Mm SINE Alu 1 146 -1 9 1125 27 0 0 0 chr11 70835977 70836004 -51007852 + AT_rich Low_complexity Low_complexity 1 27 0 9 1125 904 251 5 0 chr11 70836018 70836205 -51007651 - B3 SINE B2 -28 188 1 9 1125 21 36 0 0 chr11 70836225 70836253 -51007603 + AT_rich Low_complexity Low_complexity 1 28 0 9 1125 662 245 103 52 chr11 70836254 70836448 -51007408 - B3 SINE B2 -11 205 2 9 1125 591 275 65 35 chr11 70836973 70837173 -51006683 + B3A SINE B2 1 206 -10 9 1125 346 295 0 78 chr11 70837231 70837334 -51006522 + PB1D10 SINE Alu 23 117 0 9 1125 765 262 62 10 chr11 70837958 70838166 -51005690 + ID_B1 SINE B4 4 222 -2 9 1125 227 191 48 0 chr11 70839651 70839693 -51004163 + ID4_ SINE ID 2 45 -38 9 1125 387 300 18 9 chr11 70840013 70840124 -51003732 + RSINE1 SINE B4 6 117 -48 9 1125 584 150 99 8 chr11 70840255 70840376 -51003480 + B1_Mur2 SINE Alu 18 149 0 9 1125 439 238 84 121 chr11 70840392 70840607 -51003249 - MER31A LTR ERV1 -21 464 258 9 1125 906 232 101 69 chr11 70841156 70841616 -51002240 + RMER13A LTR ERVK 112 702 -206 9 1125 238 316 83 32 chr11 70842175 70842332 -51001524 + MLT1C LTR MaLR 9 173 -294 9 1125 225 0 0 0 chr11 70842515 70842540 -51001316 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1125 346 168 227 21 chr11 70843048 70843145 -51000711 - B3 SINE B2 0 216 100 9 1125 368 97 16 0 chr11 70843448 70843510 -51000346 + B1_Mus1 SINE Alu 31 93 -55 9 1125 494 263 70 0 chr11 70843744 70843900 -50999956 - B3A SINE B2 -5 193 27 9 1125 480 203 129 7 chr11 70843952 70844091 -50999765 - MTD LTR MaLR -65 354 199 9 1125 369 0 0 0 chr11 70844188 70844229 -50999627 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1125 462 267 9 71 chr11 70844264 70844474 -50999382 + Lx9 LINE L1 7191 7387 -257 9 1125 201 222 0 0 chr11 70847210 70847246 -50996610 + G-rich Low_complexity Low_complexity 1 36 0 9 1125 324 0 0 0 chr11 70847628 70847664 -50996192 + (CAA)n Simple_repeat Simple_repeat 2 37 0 9 1125 227 308 39 0 chr11 70847692 70847770 -50996086 + PB1D10 SINE Alu 37 117 0 9 1125 1096 56 14 21 chr11 70847804 70847949 -50995907 + B1_Mus2 SINE Alu 3 146 -1 9 1125 607 264 6 54 chr11 70848167 70848335 -50995521 + RSINE1 SINE B4 2 161 -4 9 1125 189 107 0 0 chr11 70848405 70848433 -50995423 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1125 993 191 40 10 chr11 70849052 70849253 -50994603 + B3 SINE B2 1 207 -9 9 1125 522 256 62 6 chr11 70849287 70849464 -50994392 + L1_Mur3 LINE L1 356 542 -7170 9 1125 2165 188 46 14 chr11 70849462 70849900 -50993956 + Lx7 LINE L1 6804 7255 -441 9 1125 748 202 57 26 chr11 70849900 70850093 -50993763 - B3 SINE B2 -2 193 2 9 1125 1422 182 189 34 chr11 70850097 70850479 -50993377 + Lx7 LINE L1 7247 7687 -9 9 1125 859 275 125 21 chr11 70850476 70850857 -50992999 + L1MB8 LINE L1 5589 6004 -174 9 1125 875 198 34 24 chr11 70850954 70851161 -50992695 - B3 SINE B2 -4 212 4 9 1125 231 304 24 37 chr11 70851198 70851280 -50992576 - RMER12 LTR ERVK -493 829 749 9 1125 748 213 31 57 chr11 70851296 70851490 -50992366 - B3A SINE B2 -7 191 3 9 1125 449 257 0 9 chr11 70851498 70851608 -50992248 - B1F1 SINE Alu -40 109 1 9 1125 582 254 0 0 chr11 70852982 70853108 -50990748 + ID_B1 SINE B4 99 224 0 9 1125 202 62 62 0 chr11 70853357 70853389 -50990467 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 9 1125 2299 127 39 41 chr11 70853773 70854241 -50989615 - IAPLTR2_Mm LTR ERVK -8 467 1 9 1125 21413 16 4 0 chr11 70854241 70856596 -50987260 - IAPEz-int LTR ERVK 0 6481 4117 9 1125 477 66 0 0 chr11 70856588 70856649 -50987207 - IAPEz-int LTR ERVK -2896 3585 3525 9 1125 937 88 24 0 chr11 70856649 70856774 -50987082 - IAPEz-int LTR ERVK -2770 4910 4783 9 1125 1838 115 4 4 chr11 70856769 70857031 -50986825 - IAPEz-int LTR ERVK -5183 2497 2236 9 1125 454 66 0 32 chr11 70857020 70857083 -50986773 - IAPEz-int LTR ERVK -5062 1419 1359 9 1125 5400 47 6 14 chr11 70857083 70857750 -50986106 - IAPEz-int LTR ERVK -5819 662 1 9 1125 2299 127 39 41 chr11 70857751 70858219 -50985637 - IAPLTR2_Mm LTR ERVK -8 467 1 9 1125 190 344 94 0 chr11 70858348 70858444 -50985412 + L3 LINE CR1 4300 4404 -85 9 1125 23 0 0 0 chr11 70858745 70858768 -50985088 + AT_rich Low_complexity Low_complexity 1 23 0 9 1125 809 189 192 11 chr11 70858800 70858982 -50984874 - B3 SINE B2 0 216 2 9 1125 248 196 198 42 chr11 70859010 70859106 -50984750 - RMER1C Other Other 0 1342 1232 9 1125 315 99 493 18 chr11 70859238 70859354 -50984502 - B3 SINE B2 -1 215 45 9 1125 235 274 14 0 chr11 70859368 70859441 -50984415 - L1M5 LINE L1 -440 5739 5666 9 1125 1039 208 128 36 chr11 70859442 70859746 -50984110 - IAPEY3_LTR LTR ERVK 0 332 1 9 1125 37 23 0 0 chr11 70860228 70860272 -50983584 + AT_rich Low_complexity Low_complexity 1 44 0 9 1125 362 56 19 0 chr11 70860294 70860348 -50983508 - B2_Mm2 SINE B2 -94 101 47 9 1125 1434 46 29 0 chr11 70860376 70860551 -50983305 - B2_Mm2 SINE B2 -14 181 2 9 1125 255 326 96 0 chr11 70862066 70862201 -50981655 + MLT1A1 LTR MaLR 6 153 -255 9 1125 4310 53 0 2 chr11 70862648 70863175 -50980681 - L1_Mus1 LINE L1 0 6567 6042 9 1125 363 44 0 0 chr11 70863383 70863428 -50980428 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1125 1160 70 0 0 chr11 70863499 70863642 -50980214 + B1_Mus1 SINE Alu 1 143 -5 9 1125 240 59 0 0 chr11 70863646 70863680 -50980176 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1125 467 346 133 4 chr11 70863970 70864248 -50979608 - LTR16A LTR ERVL -1 450 137 9 1125 605 150 163 39 chr11 70864249 70864263 -50979593 - B2_Mm2 SINE B2 -22 173 159 9 1125 297 0 0 0 chr11 70864263 70864296 -50979560 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 9 1125 605 150 163 39 chr11 70864296 70864434 -50979422 - B2_Mm2 SINE B2 -37 158 2 9 1125 2485 129 72 5 chr11 70865448 70865891 -50977965 - RMER21A LTR ERV1 -78 869 397 9 1125 280 305 0 0 chr11 70865896 70865978 -50977878 + RLTR4_MM-int LTR ERV1 1551 1632 -5924 9 1125 329 312 56 56 chr11 70866323 70866520 -50977336 + RLTR4_MM-int LTR ERV1 1957 2153 -5448 9 1125 5349 39 0 0 chr11 70866527 70867150 -50976706 - L1Md_T LINE L1 0 6582 5960 9 1125 253 300 11 0 chr11 70867322 70867412 -50976444 + RLTR4_MM-int LTR ERV1 2357 2447 -5109 9 1125 591 336 25 15 chr11 70867590 70867916 -50975940 + MuLV-int LTR ERV1 4109 4437 -3169 9 1125 754 140 29 14 chr11 70869067 70869205 -50974651 + L1_Mur3 LINE L1 2091 2230 -3650 9 1125 1870 221 26 8 chr11 70869213 70869601 -50974255 + MTD LTR MaLR 25 419 0 9 1125 232 156 44 0 chr11 70869643 70869688 -50974168 + (TATG)n Simple_repeat Simple_repeat 1 47 0 9 1125 468 0 0 0 chr11 70869694 70869746 -50974110 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 9 1125 2399 126 80 0 chr11 70869845 70870209 -50973647 + ORR1B1 LTR MaLR 2 394 0 9 1125 21 0 0 0 chr11 70870535 70870556 -50973300 + AT_rich Low_complexity Low_complexity 1 21 0 9 1125 5141 42 3 0 chr11 70871547 70872164 -50971692 - L1Md_F3 LINE L1 0 6584 5966 9 1125 5552 56 7 8 chr11 70872164 70872889 -50970967 - L1Md_A LINE L1 -1447 4436 3710 9 1125 5776 119 16 15 chr11 70872882 70874503 -50969353 - L1Md_A LINE L1 -3847 2036 416 9 1125 215 358 37 9 chr11 70874854 70874961 -50968895 + L2c LINE L2 3269 3378 -9 9 1125 1823 194 42 71 chr11 70875247 70875653 -50968203 + ORR1B1 LTR MaLR 1 394 0 9 1125 7389 167 48 86 chr11 70875653 70876271 -50967585 + ORR1B1-int LTR MaLR 1 640 -1323 9 1125 8263 35 5 1 chr11 70876271 70877246 -50966610 + L1Md_F3 LINE L1 5604 6582 -2 9 1125 7389 160 70 70 chr11 70877246 70878519 -50965337 + ORR1B1-int LTR MaLR 641 1770 -193 9 1125 459 0 0 0 chr11 70878559 70878610 -50965246 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1125 540 222 0 67 chr11 70878933 70879097 -50964759 + ORR1B1-int LTR MaLR 1245 1397 -112 9 1125 3370 28 28 0 chr11 70879215 70879615 -50964241 - IAPLTR2a LTR ERVK 0 411 1 9 1125 14544 61 7 8 chr11 70879615 70881423 -50962433 - IAPEz-int LTR ERVK 0 6481 4676 9 1125 1889 74 16 0 chr11 70881441 70881683 -50962173 - IAPEz-int LTR ERVK -5183 2497 2252 9 1125 1004 50 0 0 chr11 70881684 70881803 -50962053 - IAPEz-int LTR ERVK -5004 1477 1359 9 1125 3665 58 1 16 chr11 70881803 70882381 -50961475 - IAPEz-int LTR ERVK -5819 662 168 9 1125 235 309 0 0 chr11 70882381 70882436 -50961420 - RLTR27 LTR ERVK -34 275 221 9 1125 1015 101 94 6 chr11 70882436 70882606 -50961250 - IAPEz-int LTR ERVK -6288 193 9 9 1125 1088 8 0 0 chr11 70882607 70882739 -50961117 - IAPLTR2_Mm LTR ERVK 0 475 344 9 1125 2411 143 120 25 chr11 70883024 70883498 -50960358 + MURVY-LTR LTR ERV1 1 519 0 9 1125 396 117 0 0 chr11 70883793 70883870 -50959986 + (T)n Simple_repeat Simple_repeat 1 77 0 9 1125 745 211 17 28 chr11 70883889 70884054 -50959802 + RLTR10D LTR ERVK 1 165 -194 9 1125 180 0 0 0 chr11 70884054 70884074 -50959782 + (CCCTAA)n Simple_repeat Simple_repeat 2 21 0 9 1125 745 211 17 28 chr11 70884074 70884088 -50959768 + RLTR10D LTR ERVK 166 178 -181 9 1125 12115 267 15 13 chr11 70884089 70887455 -50956401 + IAP-d-int LTR ERVK 1804 5176 -1366 9 1125 2146 214 61 18 chr11 70887450 70888006 -50955850 + IAP-d-int LTR ERVK 5480 6059 -483 9 1125 2201 174 19 8 chr11 70888055 70888426 -50955430 + IAP-d-int LTR ERVK 6168 6542 0 9 1125 312 109 0 0 chr11 70888426 70888481 -50955375 + RLTR10D LTR ERVK 1 55 -304 9 1125 2704 45 0 3 chr11 70888481 70888817 -50955039 - L1Md_F2 LINE L1 -1 6581 6247 9 1125 1342 183 62 3 chr11 70888825 70889115 -50954741 - IAPEY3_LTR LTR ERVK -12 320 14 9 1125 2232 39 0 0 chr11 70889123 70889379 -50954477 - L1Md_F2 LINE L1 -330 6252 5997 1 1125 939 217 66 36 chr11 70889379 70889680 -50954176 + RLTR10D LTR ERVK 50 359 0 9 1125 850 115 0 0 chr11 70889680 70889802 -50954054 - B1_Mus2 SINE Alu -24 123 2 1 1125 42 57 0 0 chr11 70890996 70891066 -50952790 + AT_rich Low_complexity Low_complexity 1 70 0 1 1125 6004 102 21 9 chr11 70891314 70892169 -50951687 + Lx3A LINE L1 6114 6978 -3 1 1125 24 85 0 0 chr11 70892232 70892291 -50951565 + AT_rich Low_complexity Low_complexity 1 59 0 1 1125 1203 90 23 0 chr11 70892353 70892530 -50951326 - B2_Mm2 SINE B2 -14 181 1 1 1125 2828 28 0 0 chr11 70893175 70893497 -50950359 - RLTRETN_Mm LTR ERVK 0 322 1 1 1125 22105 48 11 15 chr11 70893497 70896255 -50947601 - MMETn-int LTR ERVK 0 4844 2099 1 1125 38698 40 0 3 chr11 70896257 70902462 -50941394 - L1Md_T LINE L1 0 6585 304 1 1125 18346 26 2 3 chr11 70902463 70904579 -50939277 - MMETn-int LTR ERVK -2731 2113 1 1 1125 2832 25 0 0 chr11 70904579 70904901 -50938955 - RLTRETN_Mm LTR ERVK 0 322 1 1 1125 542 270 55 6 chr11 70904969 70905133 -50938723 - B3A SINE B2 -24 174 3 1 1125 589 299 52 14 chr11 70905154 70905364 -50938492 + RCHARR1 DNA MER1_type 3 220 -754 1 1125 1600 305 52 53 chr11 70907259 70907474 -50936382 + L1M2 LINE L1 4424 4617 -1526 1 1125 1653 51 0 23 chr11 70907474 70907693 -50936163 - L1_Mus1 LINE L1 0 6567 6354 1 1125 1600 305 52 53 chr11 70907693 70908418 -50935438 + L1M2 LINE L1 4618 5363 -780 1 1125 1790 314 45 34 chr11 70908521 70909368 -50934488 + Lx8 LINE L1 6241 7096 -377 1 1125 180 176 0 0 chr11 70909683 70909717 -50934139 + T-rich Low_complexity Low_complexity 1 34 0 1 1125 28 61 0 0 chr11 70909781 70909830 -50934026 + AT_rich Low_complexity Low_complexity 1 49 0 1 1126 405 0 0 0 chr11 70910778 70910823 -50933033 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1126 918 82 0 0 chr11 70910826 70910972 -50932884 + (GA)n Simple_repeat Simple_repeat 1 146 0 1 1126 233 352 102 58 chr11 70911141 70911370 -50932486 - ORR1E LTR MaLR 0 359 116 1 1126 183 100 0 0 chr11 70911370 70911400 -50932456 + (CATATA)n Simple_repeat Simple_repeat 1 30 0 1 1126 233 352 102 58 chr11 70911400 70911514 -50932342 - ORR1E LTR MaLR -244 115 2 1 1126 4108 73 5 16 chr11 70911747 70912305 -50931551 - L1Md_F2 LINE L1 0 6582 6031 1 1126 1115 204 75 31 chr11 70913347 70913641 -50930215 + ORR1D1 LTR MaLR 38 344 -30 1 1126 953 312 19 13 chr11 70914075 70914448 -50929408 + MTE2b LTR MaLR 5 379 0 1 1126 630 307 50 53 chr11 70914449 70914752 -50929104 + MTE2b-int LTR MaLR 2 303 -1277 1 1126 5799 46 4 1 chr11 70914752 70915446 -50928410 - L1Md_F3 LINE L1 -198 5685 4990 1 1126 7606 23 3 1 chr11 70915446 70916323 -50927533 + L1Md_F3 LINE L1 5705 6583 -1 1 1126 2372 275 118 21 chr11 70916438 70917383 -50926473 + MTE2b-int LTR MaLR 543 1578 -2 1 1126 1059 300 41 17 chr11 70917434 70917729 -50926127 - RMER1A Other Other -728 302 1 1 1126 186 43 0 0 chr11 70917743 70917766 -50926090 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1126 285 337 0 0 chr11 70917942 70918034 -50925822 - PB1D10 SINE Alu -5 112 21 1 1126 3962 168 113 69 chr11 70918264 70919165 -50924691 + RMER21A LTR ERV1 1 941 -6 1 1126 239 320 116 13 chr11 70919783 70919938 -50923918 + MIRb SINE MIR 9 179 -89 1 1126 219 225 0 0 chr11 70921467 70921507 -50922349 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1126 805 300 62 45 chr11 70921947 70922369 -50921487 + Lx9 LINE L1 7197 7625 -19 1 1126 285 185 15 30 chr11 70923059 70923126 -50920730 + MLT1A1 LTR MaLR 322 387 -21 1 1126 257 316 21 10 chr11 70923894 70923990 -50919866 + L2b LINE L2 3279 3375 0 1 1126 306 0 0 0 chr11 70924164 70924198 -50919658 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1126 261 355 99 28 chr11 70924846 70925098 -50918758 - LTR16A LTR ERVL -99 352 83 1 1126 522 83 0 0 chr11 70925460 70925532 -50918324 + (TCC)n Simple_repeat Simple_repeat 2 73 0 1 1126 218 175 0 0 chr11 70926545 70926585 -50917271 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 1 1126 266 248 57 38 chr11 70926757 70926862 -50916994 - MIRb SINE MIR -99 169 63 1 1126 225 278 25 50 chr11 70927424 70927545 -50916311 + L1MA9 LINE L1 5896 6013 -299 1 1126 654 139 0 0 chr11 70928673 70928810 -50915046 + (GA)n Simple_repeat Simple_repeat 2 138 0 1 1126 250 188 58 0 chr11 70928811 70928880 -50914976 + (CAGA)n Simple_repeat Simple_repeat 4 76 0 1 1126 431 293 50 15 chr11 70928957 70929158 -50914698 - B3 SINE B2 -4 212 5 1 1126 1504 201 85 6 chr11 70929581 70929946 -50913910 - RLTR16 LTR ERVK -105 400 7 1 1126 22948 140 19 14 chr11 70930329 70934063 -50909793 - Lx LINE L1 -10 6644 2883 1 1126 1429 78 5 16 chr11 70934063 70934257 -50909599 - B2_Mm1a SINE B2 -1 192 1 1 1126 22948 153 18 15 chr11 70934257 70935315 -50908541 - Lx LINE L1 -3001 2882 1830 1 1126 249 33 0 0 chr11 70937834 70937864 -50905992 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1 1126 255 312 43 5 chr11 70938035 70938161 -50905695 - L2a LINE L2 -1 3425 3250 1 1126 195 204 0 0 chr11 70938871 70938925 -50904931 + (CAAT)n Simple_repeat Simple_repeat 3 56 0 1 1126 3788 166 36 3 chr11 70938978 70939644 -50904212 + Lx3C LINE L1 6287 6974 -2 1 1126 12241 249 32 31 chr11 70939742 70940412 -50903444 + MYSERV6-int LTR ERVK 456 1129 -7830 1 1126 4175 48 6 2 chr11 70940412 70940913 -50902943 + RLTR1C LTR ERV1 1 503 0 1 1126 12241 249 32 31 chr11 70940913 70943551 -50900305 + MYSERV6-int LTR ERVK 1130 3767 -5192 1 1126 1857 185 64 7 chr11 70943549 70943989 -50899867 + MYSERV16_I-int LTR ERVK 1857 2321 -5 1 1126 2842 122 7 9 chr11 70943991 70944437 -50899419 + BGLII_A LTR ERVK 1 445 0 1 1126 214 224 0 20 chr11 70944485 70944535 -50899321 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1 1126 313 279 108 25 chr11 70945071 70945186 -50898670 - Lx9 LINE L1 -173 7471 7344 1 1126 618 26 0 0 chr11 70945186 70945262 -50898594 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1126 313 279 108 25 chr11 70945262 70945304 -50898552 - Lx9 LINE L1 -301 7343 7302 1 1126 31212 75 5 6 chr11 70945566 70950350 -50893506 + L1Md_F2 LINE L1 422 5198 -685 1 1126 7594 62 17 2 chr11 70950362 70951324 -50892532 + L1Md_F2 LINE L1 5601 6576 -6 1 1126 2895 271 39 37 chr11 70951351 70952233 -50891623 + Lx8 LINE L1 6241 7123 -350 1 1126 246 225 111 48 chr11 70952327 70952453 -50891403 + Lx8 LINE L1 7338 7471 -2 1 1126 1328 254 77 31 chr11 70952989 70953003 -50890853 + L1_Rod LINE L1 810 821 -6787 1 1126 1762 75 38 42 chr11 70953003 70953268 -50890588 - L1Md_F2 LINE L1 -12 6570 6307 1 1126 1328 245 87 41 chr11 70953268 70954079 -50889777 + L1_Rod LINE L1 822 1675 -4172 1 1126 1120 231 115 3 chr11 70954182 70954585 -50889271 + Lx6 LINE L1 6225 6881 -579 1 1126 614 104 10 0 chr11 70954743 70954839 -50889017 + (TC)n Simple_repeat Simple_repeat 1 97 0 1 1126 213 330 85 0 chr11 70955209 70955315 -50888541 - MIRb SINE MIR -17 251 137 1 1126 255 298 0 69 chr11 70956494 70956595 -50887261 - RLTR42-int LTR ERVK -130 5392 5299 1 1126 310 227 54 9 chr11 70956699 70956810 -50887046 - RLTR42-int LTR ERVK -639 4883 4768 1 1126 567 0 0 0 chr11 70957800 70957863 -50885993 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1126 297 0 0 0 chr11 70958633 70958666 -50885190 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1126 272 364 26 32 chr11 70958789 70958945 -50884911 - B4A SINE B4 -97 195 41 1 1126 20028 90 32 6 chr11 70958947 70960457 -50883399 - L1_Mus3 LINE L1 0 6638 5115 1 1126 1174 62 7 0 chr11 70960457 70960602 -50883254 - B1_Mus2 SINE Alu -1 146 1 1 1126 20028 115 17 16 chr11 70960602 70960969 -50882887 - L1_Mus3 LINE L1 -769 5114 4762 1 1126 1908 86 12 0 chr11 70960969 70961225 -50882631 - L1_Mus1 LINE L1 0 6567 6309 1 1126 20028 115 17 16 chr11 70961225 70963182 -50880674 - L1_Mus3 LINE L1 -1122 4761 2765 1 1126 2805 179 17 0 chr11 70963179 70963709 -50880147 + L1_Mm LINE L1 4925 5463 -420 1 1126 8163 62 3 6 chr11 70963737 70965067 -50878789 - L1_Mus1 LINE L1 0 6567 5244 1 1126 1675 116 4 0 chr11 70965069 70965311 -50878545 + L1_Mus1 LINE L1 4979 5221 -662 1 1126 647 234 7 0 chr11 70965822 70965963 -50877893 + B1_Mur4 SINE Alu 2 143 -7 1 1126 1092 97 7 0 chr11 70966308 70966453 -50877403 - B1_Mm SINE Alu -1 146 1 1 1126 3327 229 15 0 chr11 70966482 70967160 -50876696 - Lx5 LINE L1 -6 7044 6357 1 1126 677 12 12 0 chr11 70968599 70968681 -50875175 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1 1126 406 321 62 12 chr11 70968950 70969111 -50874745 + RCHARR1 DNA MER1_type 27 195 -779 1 1126 344 228 45 82 chr11 70971100 70971210 -50872646 + PB1D9 SINE Alu 2 107 -13 1 1126 1536 311 98 34 chr11 70971390 70972218 -50871638 + Lx8 LINE L1 6212 7092 -381 1 1126 1181 7 7 0 chr11 70972518 70972656 -50871200 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 1 1126 263 214 56 14 chr11 70973134 70973205 -50870651 + CT-rich Low_complexity Low_complexity 5 78 0 1 1126 449 111 25 0 chr11 70973715 70973796 -50870060 + (AGGGGG)n Simple_repeat Simple_repeat 4 86 0 1 1126 449 273 34 73 chr11 70974079 70974257 -50869599 - ORR1E LTR MaLR -188 171 1 1 1126 959 236 70 54 chr11 70975490 70975821 -50868035 + ORR1D1 LTR MaLR 10 345 -29 1 1126 21 36 0 0 chr11 70975861 70975889 -50867967 + AT_rich Low_complexity Low_complexity 1 28 0 1 1126 1734 299 75 15 chr11 70975961 70976695 -50867161 + MTE-int LTR MaLR 801 1578 -2 1 1126 222 91 0 0 chr11 70977998 70978031 -50865825 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1126 504 0 0 0 chr11 70979412 70979468 -50864388 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1126 234 0 0 0 chr11 70979468 70979493 -50864363 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1126 10639 21 0 0 chr11 70979814 70981707 -50862149 - L1Md_A LINE L1 -2 6580 4687 1 1126 495 287 163 25 chr11 70981823 70982184 -50861672 + Lx9 LINE L1 7205 7615 -29 1 1126 1467 55 5 11 chr11 70982798 70982983 -50860873 + B2_Mm1a SINE B2 2 185 -8 1 1126 738 0 0 0 chr11 70983458 70983540 -50860316 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1126 266 408 21 32 chr11 70983567 70983757 -50860099 - LTR16A LTR ERVL -143 308 121 1 1126 312 27 0 0 chr11 70984703 70984740 -50859116 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1126 260 238 106 13 chr11 70985312 70985464 -50858392 - MIR SINE MIR -46 222 47 1 1126 1091 56 42 0 chr11 70987079 70987221 -50856635 + B1_Mus1 SINE Alu 1 148 0 1 1126 486 0 0 0 chr11 70987231 70987285 -50856571 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1126 3878 27 0 13 chr11 70987353 70987809 -50856047 - L1Md_F2 LINE L1 0 6582 6133 1 1126 345 47 0 0 chr11 70987892 70987935 -50855921 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1126 210 176 0 0 chr11 70987948 70987999 -50855857 + GA-rich Low_complexity Low_complexity 2 52 0 1 1126 309 290 20 0 chr11 70988005 70988105 -50855751 + (CAGAGA)n Simple_repeat Simple_repeat 5 106 0 1 1126 198 220 0 0 chr11 70988112 70988171 -50855685 + GA-rich Low_complexity Low_complexity 4 62 0 1 1126 486 0 0 0 chr11 70988211 70988265 -50855591 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1126 4474 206 44 13 chr11 70988790 70989300 -50854556 + L1_Mur2 LINE L1 1526 2049 -3828 1 1126 360 0 0 0 chr11 70989300 70989340 -50854516 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1126 4474 206 44 13 chr11 70989340 70989904 -50853952 + L1_Mur2 LINE L1 2050 2633 -3244 1 1126 6754 196 44 106 chr11 70989895 70991162 -50852694 + L1_Mur2 LINE L1 3202 4316 -1561 1 1126 257 48 0 45 chr11 70991162 70991206 -50852650 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1126 6754 196 44 106 chr11 70991206 70991969 -50851887 + L1_Mur2 LINE L1 4317 5107 -770 1 1126 692 102 10 0 chr11 70991969 70992067 -50851789 + L1VL1 LINE L1 217 315 -6323 1 1126 5633 53 6 4 chr11 70992063 70993124 -50850732 + L1VL1 LINE L1 639 1702 -4181 1 1126 906 266 77 22 chr11 70993124 70993447 -50850409 + Lx5 LINE L1 5981 6321 -729 1 1126 905 125 0 7 chr11 70996430 70996583 -50847273 + (TTCC)n Simple_repeat Simple_repeat 3 154 0 1 1126 26 0 0 0 chr11 70996826 70996852 -50847004 + AT_rich Low_complexity Low_complexity 1 26 0 1 1126 329 306 74 0 chr11 70997664 70997772 -50846084 + ID_B1 SINE B4 83 198 -26 1 1126 260 264 0 0 chr11 70997773 70997845 -50846011 + (CAAT)n Simple_repeat Simple_repeat 4 75 0 1 1126 331 392 40 33 chr11 70998544 70998818 -50845038 + B4A SINE B4 11 286 -6 1 1126 205 229 21 0 chr11 70998844 70998892 -50844964 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1 1126 297 0 0 0 chr11 70998893 70998926 -50844930 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1126 1166 88 0 0 chr11 70999511 70999658 -50844198 + B1_Mus1 SINE Alu 2 148 0 1 1126 393 304 14 14 chr11 70999859 70999999 -50843857 + Lx8 LINE L1 6241 6380 -1093 1 1126 2197 281 43 58 chr11 71000002 71000764 -50843092 + Lx8 LINE L1 6386 7136 -337 1 1126 236 214 72 134 chr11 71001583 71001680 -50842176 + L1_Rod LINE L1 884 974 -6634 2 1126 8893 49 21 0 chr11 71001667 71002756 -50841100 + L1_Mm LINE L1 4449 5560 -323 3 1126 949 269 68 72 chr11 71002754 71003580 -50840276 + L1_Rod LINE L1 945 1770 -4077 2 1126 36153 47 7 5 chr11 71003608 71008831 -50835025 - L1Md_F2 LINE L1 -1 6581 1346 4 1126 8576 32 0 0 chr11 71008829 71009970 -50833886 - L1Md_A LINE L1 0 6582 5442 5 1126 2171 176 146 79 chr11 71009983 71010745 -50833111 - L1Md_F2 LINE L1 -5313 1344 523 4 1126 2500 281 48 44 chr11 71010766 71011728 -50832128 + Lx6 LINE L1 6273 7459 -1 6 1126 245 300 24 48 chr11 71011819 71011945 -50831911 + MIRb SINE MIR 110 232 -36 7 1126 684 298 82 11 chr11 71012527 71012795 -50831061 + MTE2b LTR MaLR 18 304 -75 8 1126 231 125 0 24 chr11 71013721 71013762 -50830094 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 9 1126 434 102 0 14 chr11 71013762 71013832 -50830024 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1126 190 333 85 8 chr11 71014180 71014298 -50829558 - MIRb SINE MIR -17 251 125 1 1126 1071 64 0 0 chr11 71015840 71015980 -50827876 + (TCTA)n Simple_repeat Simple_repeat 1 140 0 1 1126 333 0 0 0 chr11 71016740 71016777 -50827079 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 1 1126 549 125 0 0 chr11 71016779 71016867 -50826989 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 1 1126 192 179 0 0 chr11 71016862 71016901 -50826955 + T-rich Low_complexity Low_complexity 2 40 0 1 1126 642 307 106 31 chr11 71017016 71017420 -50826436 - RMER1A Other Other -649 381 1 1 1126 1178 214 87 14 chr11 71017501 71017776 -50826080 - RMER1B Other Other -687 379 85 1 1126 3271 29 3 3 chr11 71017772 71018153 -50825703 + L1_Mm LINE L1 5206 5586 -297 1 1126 8277 43 2 2 chr11 71018153 71019149 -50824707 + L1Md_F2 LINE L1 5587 6582 0 1 1126 17857 121 10 2 chr11 71019149 71021834 -50822022 + L1_Mm LINE L1 2583 5292 -591 1 1126 37450 40 0 18 chr11 71021846 71027733 -50816123 + L1_Mus1 LINE L1 66 5945 -625 2 1126 429 36 0 0 chr11 71027733 71027788 -50816068 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1126 7096 84 30 0 chr11 71027788 71028383 -50815473 + L1_Mus1 LINE L1 5946 6568 -2 2 1126 1958 177 6 11 chr11 71028395 71028881 -50814975 + L1_Mur3 LINE L1 1007 1495 -4382 2 1126 4115 109 2 2 chr11 71028881 71029448 -50814408 + RMER2 LTR ERV1 1 567 0 2 1126 1958 119 6 18 chr11 71029448 71029481 -50814375 + L1_Mur3 LINE L1 1496 1524 -4353 2 1126 326 151 0 14 chr11 71032084 71032158 -50811698 + CT-rich Low_complexity Low_complexity 3 75 0 2 1126 188 318 57 0 chr11 71032325 71032413 -50811443 - L2a LINE L2 -14 3412 3320 2 1126 195 337 23 11 chr11 71032435 71032522 -50811334 + MIRc SINE MIR 109 196 -72 2 1126 2653 204 40 48 chr11 71033427 71034072 -50809784 - RLTR26 LTR ERVK 0 642 3 2 1126 217 410 29 21 chr11 71034112 71034351 -50809505 + B4A SINE B4 1 241 -51 2 1126 7579 79 1 3 chr11 71034351 71035359 -50808497 + L1Md_F2 LINE L1 4581 5586 -297 2 1126 7854 68 2 5 chr11 71035359 71036358 -50807498 + L1Md_F2 LINE L1 5587 6582 0 2 1126 285 29 0 0 chr11 71036494 71036528 -50807328 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1126 251 282 0 14 chr11 71036535 71036607 -50807249 + Lx8 LINE L1 5777 5847 0 3 1126 521 293 106 13 chr11 71036664 71036975 -50806881 - Lx9 LINE L1 -4 7640 7301 3 1126 2211 268 116 35 chr11 71037185 71037934 -50805922 + Lx8 LINE L1 6140 6949 -524 3 1126 360 268 30 67 chr11 71037965 71038129 -50805727 + L1_Rod LINE L1 1614 1771 -4076 3 1126 2299 290 27 53 chr11 71038169 71039114 -50804742 + Lx6 LINE L1 6228 7434 -26 3 1126 495 0 0 0 chr11 71039594 71039649 -50804207 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1126 934 52 22 15 chr11 71039852 71039988 -50803868 + (TTTCC)n Simple_repeat Simple_repeat 4 140 0 3 1126 609 52 0 0 chr11 71040023 71040100 -50803756 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 3 140 4687 181 50 8 chr11 71040503 71041374 -50802482 + RMER13B LTR ERVK 1 908 0 3 1127 285 287 32 73 chr11 71042586 71042710 -50801146 - RLTR42-int LTR ERVK -116 5406 5288 3 1127 283 260 40 50 chr11 71042983 71043084 -50800772 - RLTR42-int LTR ERVK -815 4707 4608 3 1127 26 0 0 0 chr11 71043879 71043905 -50799951 + AT_rich Low_complexity Low_complexity 1 26 0 4 1127 180 0 0 0 chr11 71044659 71044679 -50799177 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1127 433 277 21 28 chr11 71044854 71044995 -50798861 - B4A SINE B4 -151 141 2 4 1127 213 371 86 34 chr11 71045067 71045393 -50798463 + L2 LINE L2 2711 3053 -366 4 1127 245 338 14 0 chr11 71045749 71045820 -50798036 - RSINE1 SINE B4 0 165 94 4 1127 1006 300 76 13 chr11 71045937 71046622 -50797234 - RMER1A Other Other -477 589 3 4 1127 276 238 0 45 chr11 71046627 71046715 -50797141 - RMER1A Other Other -943 87 4 4 1127 1556 227 99 13 chr11 71046687 71047062 -50796794 - RMER1B Other Other -653 413 7 4 1127 787 48 10 0 chr11 71047501 71047605 -50796251 - IAPLTR3 LTR ERVK -221 105 1 4 1127 33937 85 13 4 chr11 71047605 71053568 -50790288 + L1_Mus2 LINE L1 558 6566 0 4 1127 461 284 95 17 chr11 71054813 71054992 -50788864 + RCHARR1 DNA MER1_type 28 220 -754 4 1127 3510 111 39 0 chr11 71055290 71055806 -50788050 + Lx LINE L1 6112 6647 -7 5 1127 426 238 38 38 chr11 71057524 71057629 -50786227 + PB1D9 SINE Alu 3 107 -13 5 1127 1491 327 102 28 chr11 71057834 71058756 -50785100 + Lx8 LINE L1 6237 7226 -247 5 1127 253 280 13 13 chr11 71059428 71059504 -50784352 + CT-rich Low_complexity Low_complexity 3 78 0 5 1127 659 35 12 0 chr11 71060009 71060095 -50783761 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 1127 470 290 158 70 chr11 71060258 71060588 -50783268 - ORR1E LTR MaLR 0 359 1 5 1127 1042 212 171 23 chr11 71061822 71062121 -50781735 + ORR1D1 LTR MaLR 1 343 -31 5 1127 536 305 91 16 chr11 71062196 71062439 -50781417 + MTE-int LTR MaLR 547 807 -773 5 1127 1613 305 58 19 chr11 71062475 71063119 -50780737 + MTE-int LTR MaLR 910 1578 -2 5 1127 1161 308 10 20 chr11 71063170 71063475 -50780381 - RMER1A Other Other -728 302 1 5 1127 333 0 0 0 chr11 71063499 71063536 -50780320 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1127 258 301 21 11 chr11 71063722 71063816 -50780040 - PB1D10 SINE Alu -2 115 21 6 1127 3774 182 37 81 chr11 71064058 71064945 -50778911 + RMER21A LTR ERV1 1 848 -99 6 1127 956 168 12 65 chr11 71064945 71065285 -50778571 + RMER21A LTR ERV1 618 939 -8 6 1127 201 286 113 9 chr11 71065937 71066043 -50777813 + MIRb SINE MIR 45 161 -107 6 1127 212 236 0 0 chr11 71066160 71066215 -50777641 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1127 4638 180 13 40 chr11 71067436 71068368 -50775488 + RMER13B LTR ERVK 2 908 0 6 1127 378 0 0 0 chr11 71068503 71068545 -50775311 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1127 891 304 38 21 chr11 71068969 71069392 -50774464 + Lx9 LINE L1 7196 7625 -19 6 1127 236 323 93 39 chr11 71069815 71069944 -50773912 + MLT1A1 LTR MaLR 26 161 -213 6 1127 266 290 87 16 chr11 71070024 71070150 -50773706 + MLT1A1 LTR MaLR 254 388 -20 6 1127 239 307 13 30 chr11 71070530 71070690 -50773166 - MER5A DNA MER1_type 0 189 35 6 1127 675 94 0 0 chr11 71071724 71071820 -50772036 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 1127 321 382 13 26 chr11 71071871 71072027 -50771829 - LTR16A LTR ERVL -177 274 121 7 1127 204 135 0 0 chr11 71073436 71073473 -50770383 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 7 1127 216 250 100 22 chr11 71073658 71073748 -50770108 - MIR SINE MIR -65 143 47 7 1127 317 24 0 23 chr11 71074933 71074976 -50768880 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1127 302 304 65 16 chr11 71075506 71075690 -50768166 + HAL1-3A_ME LINE L1 1966 2158 -700 7 1127 356 134 26 35 chr11 71075699 71075815 -50768041 + (CAGA)n Simple_repeat Simple_repeat 4 118 0 7 1127 317 109 18 0 chr11 71075804 71075859 -50767997 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1127 486 0 0 0 chr11 71075861 71075915 -50767941 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1127 231 147 0 0 chr11 71075983 71076017 -50767839 + HAL1 LINE L1 190 223 -2284 7 1127 26 30 0 0 chr11 71076178 71076211 -50767645 + AT_rich Low_complexity Low_complexity 1 33 0 8 1127 413 326 57 21 chr11 71076281 71076475 -50767381 - B3 SINE B2 -2 214 14 8 1127 338 307 31 0 chr11 71077219 71077346 -50766510 + ORR1D2 LTR MaLR 1 131 -239 8 1127 189 0 0 0 chr11 71077509 71077530 -50766326 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1127 442 263 10 68 chr11 71078051 71078243 -50765613 + L1_Mur2 LINE L1 894 1074 -6654 8 1127 1470 175 20 0 chr11 71078372 71078766 -50765090 + L1_Mur2 LINE L1 1066 1491 -4386 8 1127 618 194 22 0 chr11 71078760 71078894 -50764962 + L1_Mur2 LINE L1 1642 1778 -4108 8 1127 14574 104 9 18 chr11 71078893 71079414 -50764442 + L1_Mus2 LINE L1 3752 4259 -1624 8 1127 3516 23 2 0 chr11 71079414 71079809 -50764047 + MTA_Mm LTR MaLR 1 396 0 8 1127 9415 31 2 1 chr11 71079809 71080906 -50762950 + MTA_Mm-int LTR MaLR 1 1098 0 8 1127 3465 28 2 0 chr11 71080906 71081301 -50762555 + MTA_Mm LTR MaLR 1 396 0 8 1127 14574 91 7 14 chr11 71081301 71083031 -50760825 + L1_Mus2 LINE L1 4260 5987 -579 8 1127 510 152 51 12 chr11 71083028 71083145 -50760711 + L1_Mur2 LINE L1 1933 2056 -3824 8 1127 369 0 0 0 chr11 71083146 71083187 -50760669 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1127 1821 153 3 55 chr11 71083196 71083541 -50760315 + ORR1A2 LTR MaLR 1 327 0 8 1127 489 154 11 0 chr11 71083544 71083635 -50760221 + L1_Mur2 LINE L1 2063 2154 -3723 8 1127 17574 177 19 92 chr11 71083635 71085533 -50758323 + Lx5 LINE L1 217 2303 -3574 8 1127 1444 43 21 0 chr11 71085533 71085721 -50758135 - L1Md_F2 LINE L1 0 6582 6391 9 1127 366 36 18 0 chr11 71085719 71085775 -50758081 + L1Md_F2 LINE L1 6525 6581 -1 9 1127 17574 182 32 154 chr11 71085775 71087409 -50756447 + Lx5 LINE L1 2304 3809 -2068 8 1127 1695 31 0 0 chr11 71087409 71087601 -50756255 + B2_Mm1a SINE B2 2 193 0 9 1127 17574 182 32 154 chr11 71087601 71088365 -50755491 + Lx5 LINE L1 3810 4621 -1256 8 1127 243 0 0 0 chr11 71088365 71088392 -50755464 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1127 17574 182 32 154 chr11 71088392 71088631 -50755225 + Lx5 LINE L1 4622 4850 -1027 8 1127 504 0 0 0 chr11 71088631 71088687 -50755169 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 9 1127 17574 182 32 154 chr11 71088687 71089679 -50754177 + Lx5 LINE L1 4851 5283 -594 8 1127 234 0 0 0 chr11 71089679 71089705 -50754151 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 9 1127 17574 209 40 81 chr11 71089705 71091457 -50752399 + Lx5 LINE L1 5284 7041 -9 8 1127 25 31 0 0 chr11 71091461 71091493 -50752363 + AT_rich Low_complexity Low_complexity 1 32 0 9 1127 729 268 101 0 chr11 71091493 71091702 -50752154 + ORR1D2 LTR MaLR 141 370 0 9 1127 297 272 87 0 chr11 71091747 71091850 -50752006 - PB1D7 SINE Alu -8 112 1 9 1127 260 143 18 0 chr11 71094779 71094835 -50749021 + CT-rich Low_complexity Low_complexity 3 59 0 9 1127 224 333 45 0 chr11 71095001 71095112 -50748744 - L2a LINE L2 0 3426 3311 9 1127 266 369 45 0 chr11 71095767 71095878 -50747978 + B1F2 SINE Alu 3 118 -31 1 1127 348 119 0 0 chr11 71095878 71095937 -50747919 + (CAAT)n Simple_repeat Simple_repeat 1 59 0 1 1127 5248 170 24 2 chr11 71095966 71096925 -50746931 + Lx3C LINE L1 5995 6974 -2 1 1127 331 296 0 0 chr11 71097095 71097183 -50746673 - RLTR42-int LTR ERVK -116 5406 5319 1 1127 416 35 17 0 chr11 71099200 71099258 -50744598 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1127 329 312 55 75 chr11 71099389 71099590 -50744266 - B4A SINE B4 -94 198 2 1 1127 306 365 70 34 chr11 71099666 71100023 -50743833 + L2 LINE L2 2711 3080 -339 1 1127 207 266 38 0 chr11 71100272 71100351 -50743505 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1127 410 305 0 0 chr11 71100351 71100456 -50743400 - RSINE1 SINE B4 0 165 61 1 1127 560 303 13 0 chr11 71100567 71100722 -50743134 - RMER1A Other Other -864 166 10 1 1127 1570 282 88 11 chr11 71100740 71101644 -50742212 - RMER1B Other Other -583 447 3 1 1127 863 213 105 16 chr11 71102088 71102345 -50741511 + MTD LTR MaLR 126 405 -14 1 1127 1357 219 43 0 chr11 71102655 71102956 -50740900 + ORR1D1 LTR MaLR 1 314 -60 1 1127 320 253 141 24 chr11 71102958 71103213 -50740643 - L1_Mur3 LINE L1 -760 5120 4836 1 1127 1292 183 94 52 chr11 71103247 71103628 -50740228 + L1_Mur3 LINE L1 1267 1663 -4217 1 1127 1744 169 11 74 chr11 71103628 71104006 -50739850 - ORR1B1 LTR MaLR 0 394 41 1 1127 1122 148 67 100 chr11 71104013 71104313 -50739543 - ORR1B1-int LTR MaLR 0 1509 1220 1 1127 329 183 381 0 chr11 71104327 71104496 -50739360 - MT2B LTR ERVL -343 258 1 1 1127 855 208 24 15 chr11 71104540 71104744 -50739112 - ORR1B1-int LTR MaLR -1326 637 432 1 1127 2984 159 8 31 chr11 71104744 71105349 -50738507 + RLTR22_Mur LTR ERVK 1 591 -1257 1 1127 627 221 135 21 chr11 71105350 71105423 -50738433 + L1_Mur3 LINE L1 1983 2086 -3794 1 1127 396 40 0 0 chr11 71105423 71105473 -50738383 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1127 570 67 0 0 chr11 71105478 71105553 -50738303 + (CCA)n Simple_repeat Simple_repeat 1 75 0 1 1127 649 211 0 0 chr11 71105553 71105681 -50738175 + MusHAL1 LINE L1 883 1010 -1702 1 1127 832 102 31 0 chr11 71105698 71105825 -50738031 - Lx LINE L1 -3 6651 6521 1 1127 3403 98 0 0 chr11 71105825 71106282 -50737574 - L1_Mm LINE L1 -137 5746 5290 1 1127 2594 96 16 0 chr11 71106282 71106646 -50737210 - Lx LINE L1 0 6654 6285 1 1127 1280 207 29 51 chr11 71106647 71106922 -50736934 - L1VL2 LINE L1 -5995 340 72 1 1127 2289 126 49 5 chr11 71107144 71107511 -50736345 + RLTR9A2 LTR ERVK 1 383 0 1 1127 553 219 41 16 chr11 71107517 71107638 -50736218 + B1F SINE Alu 18 141 -8 1 1127 281 89 22 0 chr11 71107758 71107803 -50736053 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1 1127 321 357 35 0 chr11 71108974 71109117 -50734739 - MLT2B5 LTR ERVL -399 318 171 1 1127 1253 34 7 0 chr11 71109538 71109684 -50734172 + B1_Mus1 SINE Alu 2 148 0 1 1127 287 61 0 39 chr11 71109684 71109735 -50734121 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 1 1127 225 222 0 153 chr11 71109917 71110002 -50733854 + RLTR24 LTR ERV1 385 456 -73 1 1127 522 60 0 35 chr11 71110227 71110313 -50733543 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1 1127 315 141 0 0 chr11 71110482 71110546 -50733310 + (TTCTCC)n Simple_repeat Simple_repeat 3 66 0 1 1127 1978 175 136 122 chr11 71110737 71111296 -50732560 + RMER2 LTR ERV1 1 567 0 1 1127 1359 172 284 29 chr11 71112220 71112449 -50731407 - RLTR23 LTR ERV1 -2 428 190 1 1127 225 0 0 0 chr11 71112449 71112474 -50731382 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1127 1359 172 284 29 chr11 71112474 71112585 -50731271 - RLTR23 LTR ERV1 -241 189 1 1 1127 477 19 0 0 chr11 71113655 71113707 -50730149 + L1Md_A LINE L1 5534 5585 -298 1 1127 8669 31 0 0 chr11 71113708 71114704 -50729152 + L1Md_A LINE L1 5587 6582 0 1 1127 22619 102 38 36 chr11 71114760 71115222 -50728634 - ETnERV3-int LTR ERVK -1411 4397 4010 1 1127 183 42 0 0 chr11 71115222 71115246 -50728610 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1127 22619 91 31 38 chr11 71115246 71118411 -50725445 - ETnERV3-int LTR ERVK -1799 4009 864 1 1127 2890 63 11 21 chr11 71118385 71118759 -50725097 - RLTR45-int LTR ERVK -5553 1691 1322 1 1127 1150 51 0 0 chr11 71119556 71119694 -50724162 - RLTR45-int LTR ERVK -6426 818 681 1 1127 4830 60 92 8 chr11 71119991 71120629 -50723227 - RLTR45-int LTR ERVK -6552 692 1 1 1127 3226 83 54 15 chr11 71120629 71121093 -50722763 - RLTR45 LTR ERVK 0 482 1 1 1127 286 240 26 13 chr11 71121885 71121961 -50721895 + MuRRS-int LTR ERV1 2167 2243 -5313 1 1127 609 339 38 40 chr11 71122421 71122845 -50721011 + MuRRS-int LTR ERV1 2480 2902 -1788 1 1127 1041 82 0 40 chr11 71123265 71123417 -50720439 - B1_Mm SINE Alu 0 147 2 1 1127 36192 62 4 1 chr11 71123425 71129461 -50714395 - L1Md_F2 LINE L1 -11 6571 515 1 1127 231 264 22 11 chr11 71129470 71129562 -50714294 - L1VL1 LINE L1 -6329 93 1 1 1127 670 324 43 30 chr11 71130013 71130356 -50713500 - RLTR6-int LTR ERV1 -126 7652 7341 1 1127 2896 179 22 5 chr11 71130541 71131093 -50712763 + RLTR31_Mm LTR ERVK 1 561 0 1 1127 250 261 31 0 chr11 71131643 71131708 -50712148 - RLTR6-int LTR ERV1 -2045 5556 5490 1 1127 1292 309 19 5 chr11 71131919 71132348 -50711508 - RLTR6-int LTR ERV1 -2397 5381 4947 1 1127 305 200 39 39 chr11 71132754 71132832 -50711024 + MuRRS4-int LTR ERV1 2402 2479 -2584 1 1127 720 277 105 101 chr11 71132884 71133425 -50710431 + RMER13A LTR ERVK 16 579 -48 1 1127 4242 19 13 0 chr11 71133572 71134048 -50709808 - LTRIS_Mm LTR ERV1 0 482 1 1 1127 6601 83 30 0 chr11 71134093 71134960 -50708896 + RLTR13B1 LTR ERVK 1 893 0 1 1127 665 280 82 80 chr11 71134962 71135439 -50708417 + RLTR4_MM-int LTR ERV1 3790 4267 -3334 1 1127 2074 109 26 3 chr11 71135441 71135754 -50708102 - ORR1A3 LTR MaLR -6 320 1 1 1127 332 286 13 0 chr11 71136295 71136372 -50707484 + RLTR4_MM-int LTR ERV1 4847 4924 -2682 1 1127 315 150 0 0 chr11 71136664 71136724 -50707132 + (GGA)n Simple_repeat Simple_repeat 1 60 0 1 1127 216 67 0 0 chr11 71137542 71137572 -50706284 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1127 528 265 6 51 chr11 71137626 71137801 -50706055 + RLTR18-int LTR ERVK 4879 5045 -316 1 1127 590 236 31 162 chr11 71138468 71138620 -50705236 + L1_Mur3 LINE L1 940 1120 -6608 1 1127 1143 69 7 7 chr11 71138620 71138766 -50705090 + B1_Mus1 SINE Alu 2 147 -1 1 1127 575 230 37 195 chr11 71138766 71138956 -50704900 + L1_Mur3 LINE L1 1050 1175 -5911 1 1127 216 0 0 0 chr11 71138956 71138980 -50704876 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1127 3959 170 23 12 chr11 71138980 71139752 -50704104 + L1_Mur3 LINE L1 1176 1965 -3912 1 1127 288 0 0 0 chr11 71139752 71139784 -50704072 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 1 1127 227 167 0 0 chr11 71139797 71139839 -50704017 + L1_Mur3 LINE L1 2061 2102 -3775 1 1127 818 202 33 38 chr11 71139897 71140108 -50703748 + L1Md_F LINE L1 328 537 -5982 1 1127 2575 109 0 0 chr11 71140114 71140490 -50703366 + L1_Mus1 LINE L1 4069 4444 -1439 1 1127 5857 107 6 0 chr11 71140484 71141303 -50702553 - L1_Mus1 LINE L1 -255 5628 4805 1 1127 7286 69 2 8 chr11 71141299 71142254 -50701602 + L1_Mus1 LINE L1 5640 6567 0 1 1127 10626 100 4 1 chr11 71142254 71143704 -50700152 + L1_Mus1 LINE L1 4429 5883 0 1 1127 3614 39 7 14 chr11 71143706 71144151 -50699705 + L1_Mus1 LINE L1 6125 6566 -1 1 1127 5198 179 35 179 chr11 71144155 71144661 -50699195 + Lx5 LINE L1 2072 2565 -3312 1 1127 5152 85 136 0 chr11 71144661 71145406 -50698450 + L1_Mus3 LINE L1 5789 6634 -4 1 1127 5198 179 35 179 chr11 71145406 71145504 -50698352 + Lx5 LINE L1 2566 2651 -3226 1 1127 1152 82 0 0 chr11 71145504 71145651 -50698205 + B1_Mus1 SINE Alu 1 147 -1 1 1127 5198 179 35 179 chr11 71145651 71145971 -50697885 + Lx5 LINE L1 2652 2947 -2930 1 1127 739 176 0 0 chr11 71145971 71146096 -50697760 + B2_Mm2 SINE B2 1 125 -70 1 1127 5198 179 35 179 chr11 71146096 71146281 -50697575 + Lx5 LINE L1 2948 3120 -2757 1 1127 2499 175 156 23 chr11 71146281 71146890 -50696966 + RMER6C LTR ERVK 1 690 0 1 1127 5198 179 35 179 chr11 71146890 71147391 -50696465 + Lx5 LINE L1 3121 3553 -2324 1 1127 4420 108 104 7 chr11 71147391 71148063 -50695793 + RMER19A LTR ERVK 1 737 0 1 1127 5198 179 35 179 chr11 71148063 71148140 -50695716 + Lx5 LINE L1 3554 3624 -2253 1 1127 6079 181 53 15 chr11 71148138 71149836 -50694020 + Lx5 LINE L1 4998 6778 -272 1 1127 334 231 259 0 chr11 71149840 71149971 -50693885 - B4A SINE B4 -100 192 28 1 1127 975 152 0 0 chr11 71150011 71150189 -50693667 + (GCTG)n Simple_repeat Simple_repeat 1 178 0 1 1127 183 184 0 0 chr11 71150191 71150229 -50693627 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 1 1127 251 301 27 0 chr11 71150234 71150307 -50693549 - RSINE1 SINE B4 -9 156 82 1 1127 392 309 7 61 chr11 71150312 71150460 -50693396 - B4A SINE B4 -145 147 8 1 1127 479 17 0 16 chr11 71151231 71151292 -50692564 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1127 2507 158 48 29 chr11 71152801 71153282 -50690574 - Lx9 LINE L1 -554 7090 6601 1 1127 2141 250 35 157 chr11 71153898 71154058 -50689798 - L1_Mur3 LINE L1 -168 5712 5561 1 1127 183 80 0 0 chr11 71154058 71154083 -50689773 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1127 2141 250 35 157 chr11 71154083 71154417 -50689439 - L1_Mur3 LINE L1 -320 5560 5292 1 1127 8289 43 1 3 chr11 71154417 71155414 -50688442 + L1Md_F2 LINE L1 5587 6581 -1 1 1127 2141 250 35 157 chr11 71155414 71155863 -50687993 - L1_Mur3 LINE L1 -589 5291 4883 1 1127 3714 299 50 14 chr11 71155863 71157096 -50686760 + Lx8 LINE L1 6197 7473 0 1 1127 558 282 144 0 chr11 71157147 71157335 -50686521 - Lx8 LINE L1 -86 7387 7173 1 1127 953 48 0 0 chr11 71157339 71157464 -50686392 + B1_Mus1 SINE Alu 1 125 -23 1 1127 414 0 0 0 chr11 71157464 71157510 -50686346 + (CTAA)n Simple_repeat Simple_repeat 3 48 0 1 1127 709 254 85 10 chr11 71157510 71157709 -50686147 - Lx8 LINE L1 -293 7180 6967 1 1127 303 28 0 0 chr11 71157727 71157763 -50686093 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1127 340 268 23 11 chr11 71158079 71158166 -50685690 - RSINE1 SINE B4 -57 108 21 1 1127 3886 110 120 8 chr11 71158238 71158444 -50685412 - RMER19A LTR ERVK -12 725 519 1 1127 204 40 0 0 chr11 71158444 71158469 -50685387 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 1 1127 3886 110 120 8 chr11 71158469 71158914 -50684942 - RMER19A LTR ERVK -219 518 3 1 1127 923 181 50 0 chr11 71159973 71160155 -50683701 + MTD LTR MaLR 229 419 0 1 1127 5599 57 3 8 chr11 71160680 71161423 -50682433 - L1Md_F2 LINE L1 0 6582 5877 1 1127 216 312 60 86 chr11 71161848 71161999 -50681857 + L2b LINE L2 3229 3375 0 1 1127 368 327 59 111 chr11 71162185 71162646 -50681210 + LTR33A LTR ERVL 76 512 -8 1 1127 269 282 38 13 chr11 71165081 71165160 -50678696 - ID4_ SINE ID 0 83 3 1 1127 1436 88 16 0 chr11 71165196 71165388 -50678468 + B2_Mm2 SINE B2 1 195 0 1 1127 701 74 33 0 chr11 71165450 71165572 -50678284 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1127 450 0 0 0 chr11 71165572 71165621 -50678235 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1127 537 303 38 0 chr11 71165705 71165837 -50678019 - B4A SINE B4 -72 220 84 1 1127 495 0 0 0 chr11 71165837 71165892 -50677964 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1127 189 182 60 15 chr11 71166737 71166804 -50677052 - MIRc SINE MIR -138 130 61 1 1127 238 268 88 15 chr11 71167201 71167328 -50676528 + MIRb SINE MIR 117 262 0 1 1127 26 64 0 0 chr11 71167509 71167556 -50676300 + AT_rich Low_complexity Low_complexity 1 47 0 2 1127 838 221 11 37 chr11 71167675 71167863 -50675993 + B3 SINE B2 6 188 -28 2 1127 21 36 0 0 chr11 71167983 71168011 -50675845 + AT_rich Low_complexity Low_complexity 1 28 0 2 1127 334 314 56 16 chr11 71168307 71168433 -50675423 - MIRm SINE MIR -96 180 50 2 1127 1079 284 75 17 chr11 71169251 71169609 -50674247 + MTEa LTR MaLR 1 379 0 2 1127 854 229 126 0 chr11 71169626 71169849 -50674007 + MTEa-int LTR MaLR 32 282 -1298 2 1127 626 119 22 7 chr11 71169855 71169990 -50673866 + (TC)n Simple_repeat Simple_repeat 2 138 0 2 1127 888 263 3 108 chr11 71170001 71170325 -50673531 - B4 SINE B4 0 292 3 2 1127 736 279 65 4 chr11 71170328 71170573 -50673283 + MTEa-int LTR MaLR 266 525 -1055 2 1127 248 93 47 0 chr11 71170626 71170669 -50673187 + MTEa-int LTR MaLR 1210 1254 -4 2 1127 1354 251 34 8 chr11 71170685 71171038 -50672818 + MTEa LTR MaLR 18 379 0 2 1127 244 301 61 81 chr11 71171132 71171280 -50672576 + L3 LINE CR1 3567 3711 -778 2 1127 274 246 16 0 chr11 71171688 71171749 -50672107 - ID4_ SINE ID -17 66 5 2 1127 526 288 36 7 chr11 71171865 71172005 -50671851 - ID_B1 SINE B4 -47 177 34 2 1128 253 261 42 28 chr11 71172571 71172642 -50671214 - MLT1H LTR MaLR -249 300 229 2 1128 245 232 0 0 chr11 71172922 71172991 -50670865 - MLT1K LTR MaLR -10 585 517 2 1128 210 231 0 0 chr11 71173091 71173130 -50670726 + polypyrimidine Low_complexity Low_complexity 3 41 0 2 1128 225 370 9 0 chr11 71173750 71173858 -50669998 - MLT1H LTR MaLR -351 259 151 2 1128 395 330 132 38 chr11 71173962 71174249 -50669607 - MLT1H LTR MaLR -7 542 229 2 1128 743 21 0 11 chr11 71175339 71175433 -50668423 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1128 3137 66 32 2 chr11 71175559 71175968 -50667888 + BGLII LTR ERVK 1 421 0 2 1128 644 304 89 44 chr11 71176351 71176722 -50667134 + MLT1D-int LTR MaLR 5 439 -970 2 1128 210 286 0 0 chr11 71177304 71177374 -50666482 + GA-rich Low_complexity Low_complexity 1 70 0 2 1128 364 266 194 0 chr11 71177374 71177513 -50666343 + MLT1D LTR MaLR 262 427 -78 2 1128 1720 240 47 15 chr11 71178113 71178519 -50665337 + MTD LTR MaLR 1 419 0 2 1128 7388 50 3 0 chr11 71178559 71179442 -50664414 - L1Md_F2 LINE L1 -12 6570 5685 2 1128 306 0 0 0 chr11 71181220 71181254 -50662602 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1128 227 384 14 0 chr11 71181581 71181654 -50662202 - ID4_ SINE ID -9 74 1 2 1128 392 304 32 8 chr11 71181672 71181798 -50662058 - B1F1 SINE Alu -16 133 5 2 1128 380 274 159 35 chr11 71182320 71182490 -50661366 - MER3 DNA MER1_type -18 191 1 2 1128 660 248 60 26 chr11 71182595 71182878 -50660978 - L1ME3 LINE L1 -2 6162 5858 2 1128 343 215 53 11 chr11 71182932 71183026 -50660830 - L1ME3 LINE L1 -671 5773 5676 2 1128 1180 76 0 0 chr11 71183292 71183437 -50660419 - B1_Mus1 SINE Alu 0 148 4 2 1128 317 250 30 30 chr11 71183555 71183654 -50660202 - B3A SINE B2 -99 99 1 2 1128 305 322 31 39 chr11 71184275 71184530 -50659326 - L1MA9 LINE L1 -42 6270 6018 2 1128 1047 287 33 14 chr11 71184755 71185031 -50658825 + B4A SINE B4 4 284 -8 2 1128 411 299 0 25 chr11 71185119 71185239 -50658617 + PB1D9 SINE Alu 2 118 -2 2 1128 341 200 22 45 chr11 71185242 71185331 -50658525 - MER96B DNA hAT -139 278 192 2 1128 1268 27 0 0 chr11 71186950 71187096 -50656760 + B1_Mm SINE Alu 2 147 0 2 1128 243 88 0 0 chr11 71187096 71187130 -50656726 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 2 1128 698 303 27 9 chr11 71187482 71187702 -50656154 - MLT2C1 LTR ERVL -173 224 1 2 1128 456 233 29 10 chr11 71187822 71187926 -50655930 + RSINE1 SINE B4 4 109 -56 2 1128 395 106 15 0 chr11 71187933 71187999 -50655857 + (CTA)n Simple_repeat Simple_repeat 1 67 0 2 1128 312 299 31 25 chr11 71188358 71188519 -50655337 + (TCCA)n Simple_repeat Simple_repeat 3 164 0 2 1128 233 396 86 25 chr11 71189387 71189584 -50654272 + LTR33A_ LTR ERVL 51 259 -272 2 1128 337 298 66 55 chr11 71189612 71189793 -50654063 + LTR33A_ LTR ERVL 337 519 -12 2 1128 255 313 121 0 chr11 71190236 71190335 -50653521 + PB1D10 SINE Alu 4 114 -3 2 1128 42117 11 6 3 chr11 71190392 71198367 -50645489 - L1Md_A LINE L1 0 6582 1 2 1128 498 252 240 13 chr11 71198939 71199164 -50644692 + B4A SINE B4 1 276 -16 2 1128 216 143 0 0 chr11 71199220 71199262 -50644594 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1128 971 329 78 46 chr11 71199306 71199807 -50644049 + MLT1G3 LTR MaLR 67 583 -12 2 1128 1118 244 112 10 chr11 71199932 71200243 -50643613 + ORR1E LTR MaLR 1 343 -16 2 1128 597 52 0 0 chr11 71201675 71201752 -50642104 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1128 573 15 0 0 chr11 71202490 71202556 -50641300 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1128 195 352 84 0 chr11 71202575 71202717 -50641139 - L2b LINE L2 -220 3155 3002 2 1128 342 0 0 0 chr11 71203591 71203629 -50640227 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1128 486 143 0 0 chr11 71204046 71204137 -50639719 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1128 369 0 0 0 chr11 71204137 71204178 -50639678 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1128 832 189 6 12 chr11 71204679 71204840 -50639016 + ORR1D2 LTR MaLR 202 361 -9 2 1128 4022 41 12 2 chr11 71205243 71205729 -50638127 - L1Md_F3 LINE L1 0 6584 6094 2 1128 324 0 0 0 chr11 71205792 71205828 -50638028 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1128 1205 285 21 11 chr11 71206197 71206573 -50637283 + MER63C DNA AcHobo 14 393 -537 2 1128 409 270 141 35 chr11 71206596 71206738 -50637118 + RSINE1 SINE B4 3 159 -6 2 1128 306 0 0 0 chr11 71206759 71206793 -50637063 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1128 289 360 70 16 chr11 71206817 71207060 -50636796 + MER63C DNA AcHobo 416 671 -259 2 1128 639 318 104 33 chr11 71207237 71207507 -50636349 + B4A SINE B4 2 290 -2 2 1128 369 0 0 0 chr11 71207520 71207561 -50636295 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1128 304 278 113 36 chr11 71208690 71208858 -50634998 - MIRb SINE MIR -34 234 54 2 1128 272 315 67 0 chr11 71208886 71208975 -50634881 - PB1D10 SINE Alu -13 104 10 2 1128 208 182 23 0 chr11 71209777 71209821 -50634035 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 2 1128 414 0 0 0 chr11 71210249 71210295 -50633561 + (TATG)n Simple_repeat Simple_repeat 1 46 0 2 1128 458 226 78 0 chr11 71210299 71210414 -50633442 - B3A SINE B2 -38 160 37 2 1128 337 356 86 25 chr11 71210414 71211086 -50632770 - L1MEf LINE L1 -3036 3110 2398 2 1128 296 222 119 23 chr11 71211754 71211883 -50631973 - L1MEf LINE L1 -860 1647 1410 2 1128 553 272 45 72 chr11 71212148 71212370 -50631486 - B3 SINE B2 0 216 1 2 1128 2024 188 22 22 chr11 71213307 71213716 -50630140 + MTC LTR MaLR 5 413 -8 2 1128 218 304 112 39 chr11 71214016 71214194 -50629662 + MIRc SINE MIR 18 208 -60 2 1128 751 308 116 0 chr11 71214286 71214588 -50629268 - MER2 DNA MER2_type 0 345 9 2 1128 310 247 13 27 chr11 71214709 71214784 -50629072 + polypurine Low_complexity Low_complexity 2 75 0 2 1128 303 155 17 0 chr11 71215076 71215134 -50628722 - L1MD3 LINE L1 -1 7994 7936 2 1128 308 219 71 71 chr11 71215277 71215390 -50628466 + MLT1A1 LTR MaLR 1 113 -295 2 1128 529 226 71 21 chr11 71215808 71215948 -50627908 - B1_Mus1 SINE Alu -1 147 1 2 1128 222 242 0 31 chr11 71216436 71216500 -50627356 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 2 1128 381 131 0 0 chr11 71216501 71216562 -50627294 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1128 332 323 94 65 chr11 71216617 71216862 -50626994 - B4A SINE B4 -14 278 27 2 1128 742 309 200 62 chr11 71217571 71218057 -50625799 - MT2A LTR ERVL -1 553 1 2 1128 279 286 31 68 chr11 71218267 71218458 -50625398 - Lx8 LINE L1 -2 7471 7288 2 1128 1115 147 41 0 chr11 71219164 71219361 -50624495 - ORR1C1 LTR MaLR -8 370 166 2 1128 291 113 0 0 chr11 71219362 71219415 -50624441 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 2 1128 690 177 29 41 chr11 71219418 71219589 -50624267 - ORR1C1 LTR MaLR -198 169 1 2 1128 394 241 35 0 chr11 71220327 71220414 -50623442 - B1F SINE Alu -41 108 19 2 1128 396 306 7 7 chr11 71220593 71220741 -50623115 - L3 LINE CR1 -507 3982 3835 2 1128 607 296 112 0 chr11 71222430 71222521 -50621335 + RMER30 DNA MER1_type 2 96 -106 2 1128 342 0 0 0 chr11 71222521 71222559 -50621297 + (CCAA)n Simple_repeat Simple_repeat 3 40 0 2 1128 607 296 112 0 chr11 71222559 71222646 -50621210 + RMER30 DNA MER1_type 97 199 -3 2 1128 253 317 0 28 chr11 71222702 71222809 -50621047 + CT-rich Low_complexity Low_complexity 2 105 0 2 1128 307 286 32 93 chr11 71223238 71223424 -50620432 - MIR3 SINE MIR -21 187 14 2 1128 620 311 101 39 chr11 71223603 71223958 -50619898 - MLT1B LTR MaLR -5 385 9 2 1128 233 282 32 127 chr11 71224529 71224588 -50619268 + MLT1K LTR MaLR 464 525 -70 2 1128 222 37 0 0 chr11 71224588 71224615 -50619241 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1128 1188 68 0 0 chr11 71224622 71224768 -50619088 - B1_Mm SINE Alu -1 146 1 2 1128 233 282 32 127 chr11 71224768 71224826 -50619030 + MLT1K LTR MaLR 529 577 -18 2 1128 404 325 20 0 chr11 71226158 71226309 -50617547 - MER5A DNA MER1_type -35 154 1 2 1128 2965 191 55 17 chr11 71226529 71227224 -50616632 - Lx5 LINE L1 -4 7054 6301 2 1128 311 282 130 60 chr11 71227319 71227504 -50616352 + MIRc SINE MIR 23 220 -48 2 1128 931 252 13 18 chr11 71227556 71227782 -50616074 - MER2 DNA MER2_type -31 314 90 2 1128 238 329 24 0 chr11 71227939 71228024 -50615832 - MIRb SINE MIR -90 178 92 2 1128 233 304 123 39 chr11 71229217 71229371 -50614485 - MIRb SINE MIR 0 268 102 2 1128 668 306 58 23 chr11 71229666 71229927 -50613929 + MLT-int LTR MaLR 1 270 -1465 2 1128 475 214 117 44 chr11 71229915 71230052 -50613804 - MLT1A1 LTR MaLR -5 403 257 2 1128 3023 133 98 13 chr11 71230127 71230666 -50613190 - RMER4B LTR ERVK 0 585 1 2 1128 1985 187 88 37 chr11 71230740 71231150 -50612706 - RLTR41 LTR ERV1 0 446 16 2 1128 1325 249 29 19 chr11 71231278 71231593 -50612263 + MLT-int LTR MaLR 252 569 -1166 2 1128 3681 257 96 33 chr11 71231704 71232794 -50611062 + Lx8 LINE L1 6313 7471 -2 2 1128 427 336 157 107 chr11 71233300 71233765 -50610091 + MLT-int LTR MaLR 873 1346 -389 2 1128 185 0 40 0 chr11 71233765 71233790 -50610066 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 3 1128 427 336 157 107 chr11 71233790 71234010 -50609846 + MLT-int LTR MaLR 1347 1591 -144 2 1128 296 48 0 23 chr11 71234010 71234053 -50609803 + (TATTG)n Simple_repeat Simple_repeat 2 43 0 3 1128 427 336 157 107 chr11 71234053 71234188 -50609668 + MLT-int LTR MaLR 1592 1735 0 2 1128 868 299 28 53 chr11 71234198 71234317 -50609539 + MLT1A0 LTR MaLR 38 157 -208 3 1128 832 273 80 40 chr11 71234317 71234592 -50609264 + B4A SINE B4 1 286 -6 3 1128 868 299 28 53 chr11 71234592 71234793 -50609063 + MLT1A0 LTR MaLR 158 350 -15 3 1128 663 278 42 20 chr11 71235137 71235353 -50608503 - B3A SINE B2 -13 203 1 3 1128 227 265 71 148 chr11 71235698 71235853 -50608003 - LTR39 LTR ERV1 -360 423 281 3 1128 274 308 0 0 chr11 71235814 71235892 -50607964 - MER5A1 DNA MER1_type -6 160 83 3 1128 776 292 54 46 chr11 71236906 71237232 -50606624 - RLTR26 LTR ERVK -75 552 168 3 1128 1629 286 72 63 chr11 71237497 71238276 -50605580 + L1MB7 LINE L1 5398 6183 -1 3 1128 1543 176 112 37 chr11 71238940 71239288 -50604568 - ORR1D1 LTR MaLR 0 374 1 3 1128 677 275 5 32 chr11 71239396 71239584 -50604272 - B3A SINE B2 -15 183 1 3 1128 332 258 0 15 chr11 71239654 71239721 -50604135 - B4A SINE B4 -4 288 223 3 1128 382 306 25 0 chr11 71239912 71240033 -50603823 - L1ME3A LINE L1 -271 5902 5779 3 1128 572 276 32 27 chr11 71240254 71240440 -50603416 + MLT1B LTR MaLR 1 187 -203 3 1128 366 297 81 90 chr11 71240584 71240751 -50603105 - MLT1A0 LTR MaLR -18 347 175 3 1128 1550 231 87 15 chr11 71240751 71241142 -50602714 - MTD LTR MaLR 0 419 1 3 1128 366 297 81 90 chr11 71241142 71241185 -50602671 - MLT1A0 LTR MaLR -191 174 139 3 1128 280 224 142 6 chr11 71241193 71241358 -50602498 - ORR1D2 LTR MaLR -2 357 146 3 1128 853 160 153 6 chr11 71241376 71241552 -50602304 - URR1A DNA MER1_type -24 202 1 3 1128 554 263 7 49 chr11 71241561 71241705 -50602151 - ORR1D2 LTR MaLR -232 138 1 3 1128 1358 217 146 128 chr11 71241831 71242325 -50601531 - RMER20B LTR ERVK -18 609 107 3 1128 1962 179 128 2 chr11 71242316 71242731 -50601125 + RMER15 LTR ERVL 73 539 -36 3 1128 236 309 14 29 chr11 71245767 71245837 -50598019 + ID_B1 SINE B4 96 164 -60 3 1128 229 0 83 0 chr11 71246032 71246068 -50597788 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 3 1128 1087 220 89 94 chr11 71246069 71246165 -50597691 - RMER10A LTR ERVL -18 424 319 3 1128 613 12 24 12 chr11 71246165 71246247 -50597609 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 3 1128 1087 220 89 94 chr11 71246247 71246576 -50597280 - RMER10A LTR ERVL -124 318 2 3 1128 746 233 42 5 chr11 71246919 71247109 -50596747 - B3A SINE B2 0 198 2 3 1128 214 304 159 8 chr11 71247146 71247272 -50596584 - MIR SINE MIR -60 148 4 3 1128 198 188 0 0 chr11 71247554 71247586 -50596270 + MIR SINE MIR 76 107 -155 3 1128 315 374 46 55 chr11 71248011 71248355 -50595501 + L2b LINE L2 2822 3163 -212 3 1128 225 183 38 101 chr11 71250822 71250901 -50592955 - MTE-int LTR MaLR -1148 432 359 3 1128 354 307 158 20 chr11 71250927 71251123 -50592733 + L1ME4a LINE L1 5692 5914 -210 3 1128 366 291 125 12 chr11 71251213 71251373 -50592483 - B3A SINE B2 -18 180 3 3 1128 331 311 31 63 chr11 71251947 71252074 -50591782 - MIRc SINE MIR -144 124 2 3 1128 325 281 52 45 chr11 71252349 71252542 -50591314 + MIRb SINE MIR 65 254 -14 3 1128 1284 162 13 22 chr11 71254353 71254580 -50589276 - URR1B DNA MER1_type 0 225 1 3 1128 225 0 0 0 chr11 71255061 71255086 -50588770 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1128 233 226 62 31 chr11 71255533 71255597 -50588259 + MLT1G LTR MaLR 513 578 -13 3 1128 308 318 202 21 chr11 71255626 71255819 -50588037 - L1MC4a LINE L1 -1966 5916 5689 3 1128 338 255 96 7 chr11 71255999 71256145 -50587711 + MER113 DNA MER1_type 67 225 -296 3 1128 521 286 123 23 chr11 71256205 71256466 -50587390 - L1MA8 LINE L1 0 6291 6005 3 1128 261 0 0 0 chr11 71256657 71256686 -50587170 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1128 423 336 51 0 chr11 71256699 71256934 -50586922 - L1MC4a LINE L1 -75 7807 7561 3 1128 467 296 7 27 chr11 71258197 71258343 -50585513 - MER2 DNA MER2_type -26 319 177 3 1128 271 233 95 19 chr11 71258700 71258805 -50585051 - MIR SINE MIR -121 141 29 3 1128 301 163 20 0 chr11 71258825 71258874 -50584982 + HAL1-3A_ME LINE L1 1969 2018 -840 3 1128 275 192 14 0 chr11 71258878 71258951 -50584905 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1128 261 0 0 0 chr11 71259750 71259779 -50584077 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1128 312 27 0 0 chr11 71260656 71260693 -50583163 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1128 403 89 38 38 chr11 71260708 71260813 -50583043 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 3 1128 849 297 45 101 chr11 71260906 71261284 -50582572 - ORR1E LTR MaLR -2 357 1 3 1128 273 316 68 81 chr11 71262018 71262166 -50581690 - MIRb SINE MIR -2 266 121 3 1128 385 283 0 34 chr11 71262257 71262374 -50581482 - BC1_Mm scRNA scRNA -39 113 1 3 1128 591 245 98 0 chr11 71262389 71262552 -50581304 - MTEa LTR MaLR 0 379 201 3 1128 39861 28 3 6 chr11 71262585 71268744 -50575112 - L1Md_T LINE L1 0 6582 442 3 1128 291 302 119 28 chr11 71268744 71268887 -50574969 - MTEa LTR MaLR -203 176 21 3 1128 286 346 115 36 chr11 71269003 71269168 -50574688 - MIRb SINE MIR -9 259 82 3 1128 1303 215 150 22 chr11 71269214 71269574 -50574282 - MTD LTR MaLR -14 365 1 3 1128 489 270 150 39 chr11 71269615 71270001 -50573855 + L1ME1 LINE L1 5565 5993 -186 3 1128 437 254 52 7 chr11 71270179 71270314 -50573542 - L1MB3 LINE L1 -3 6180 6040 3 1128 357 270 0 63 chr11 71270946 71271041 -50572815 + MER34A LTR ERV1 42 130 -441 3 1128 314 288 196 26 chr11 71271178 71271367 -50572489 + MER34A LTR ERV1 362 582 -5 3 1128 222 174 22 0 chr11 71271483 71271529 -50572327 - B4 SINE B4 -245 47 1 3 1128 2762 114 2 43 chr11 71272185 71272625 -50571231 + BGLII_Mus LTR ERVK 1 422 0 3 1128 442 283 124 76 chr11 71273073 71273322 -50570534 + ORR1E LTR MaLR 41 301 -58 3 1128 1184 256 80 15 chr11 71273352 71273816 -50570040 + L1MB4 LINE L1 5643 6174 -6 3 1128 1763 161 92 9 chr11 71274374 71274701 -50569155 - ORR1B1 LTR MaLR 0 394 41 3 1128 379 216 0 82 chr11 71274963 71275145 -50568711 + G-rich Low_complexity Low_complexity 5 171 0 3 1128 250 268 51 32 chr11 71275161 71275319 -50568537 + GA-rich Low_complexity Low_complexity 4 164 0 3 1128 331 291 102 107 chr11 71275414 71275774 -50568082 + L1MEe LINE L1 1983 2330 -3836 3 1128 770 289 5 0 chr11 71275774 71275964 -50567892 + B3A SINE B2 2 192 -6 3 1128 331 291 102 107 chr11 71275964 71276053 -50567803 + L1MEe LINE L1 2331 2430 -3736 3 1128 498 33 0 0 chr11 71276186 71276246 -50567610 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1128 252 0 0 0 chr11 71276246 71276273 -50567583 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1128 810 31 0 0 chr11 71276273 71276369 -50567487 + (GA)n Simple_repeat Simple_repeat 1 97 0 3 1128 238 296 80 0 chr11 71276400 71276488 -50567368 - L1MA4 LINE L1 -364 5936 5842 3 1128 492 278 92 6 chr11 71276574 71276737 -50567119 + Ricksha_c DNA MuDR 357 533 -1515 3 1128 275 318 28 18 chr11 71276849 71276958 -50566898 + Ricksha_c DNA MuDR 679 788 -1260 3 1128 443 349 68 52 chr11 71277352 71277733 -50566123 + L1MEe LINE L1 2716 3102 -3044 3 1128 186 315 60 43 chr11 71277885 71278001 -50565855 + MER5B DNA MER1_type 1 118 -60 3 1128 256 231 47 19 chr11 71278117 71278223 -50565633 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 3 1128 675 40 30 0 chr11 71278271 71278370 -50565486 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 3 1128 2172 31 12 0 chr11 71278636 71278890 -50564966 + L1Md_F2 LINE L1 6314 6570 -12 3 1128 294 331 180 17 chr11 71278928 71279100 -50564756 - MLT1J-int LTR MaLR -1102 285 86 3 1128 213 175 0 0 chr11 71279126 71279166 -50564690 + T-rich Low_complexity Low_complexity 1 40 0 3 1128 446 105 0 26 chr11 71279449 71279527 -50564329 - L1_Mus2 LINE L1 0 6566 6491 3 1128 1093 139 38 174 chr11 71279696 71279984 -50563872 - RMER1C Other Other -11 1331 1083 3 1128 343 298 10 1 chr11 71279994 71280097 -50563759 - RMER1C Other Other -511 831 730 3 1128 2531 95 0 0 chr11 71280097 71280423 -50563433 + ORR1A3 LTR MaLR 1 326 0 3 1128 1312 26 0 0 chr11 71280432 71280586 -50563270 + B2_Mm1a SINE B2 2 155 -38 3 1128 450 0 0 0 chr11 71280587 71280637 -50563219 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 1128 1466 299 53 143 chr11 71280642 71281349 -50562507 - RMER1C Other Other -468 874 271 3 1128 396 59 0 0 chr11 71281349 71281400 -50562456 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1128 1466 299 53 143 chr11 71281400 71281630 -50562226 - RMER1C Other Other -1072 270 21 3 1128 362 197 8 0 chr11 71282371 71282498 -50561358 + CT-rich Low_complexity Low_complexity 1 128 0 3 1128 364 193 229 0 chr11 71282498 71282602 -50561254 - B1_Mur2 SINE Alu -22 125 1 3 1128 318 200 28 19 chr11 71282820 71282927 -50560929 + CT-rich Low_complexity Low_complexity 6 113 0 3 1128 331 229 14 0 chr11 71283615 71283685 -50560171 - ID4_ SINE ID -11 72 2 3 1128 1538 218 79 82 chr11 71283747 71283951 -50559905 + MTD LTR MaLR 1 190 -229 3 1128 1941 123 22 19 chr11 71283951 71284193 -50559663 + L1_Mus3 LINE L1 6324 6561 -77 3 1128 321 47 0 0 chr11 71284193 71284236 -50559620 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1128 1941 123 22 19 chr11 71284236 71284307 -50559549 + L1_Mus3 LINE L1 6562 6636 -2 3 1128 1538 219 76 83 chr11 71284307 71284517 -50559339 + MTD LTR MaLR 191 403 -16 3 1128 376 145 83 42 chr11 71285369 71285441 -50558415 - MTD LTR MaLR -62 357 283 3 1128 656 261 48 73 chr11 71285522 71285770 -50558086 - MTD LTR MaLR -177 242 1 3 1128 251 225 0 0 chr11 71286001 71286041 -50557815 - ID SINE ID -184 40 1 3 1128 540 0 0 0 chr11 71286195 71286255 -50557601 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1128 215 366 122 19 chr11 71286389 71286545 -50557311 + L2a LINE L2 3221 3392 -34 3 1128 251 225 0 0 chr11 71287060 71287100 -50556756 + ID SINE ID 1 40 -184 3 1128 1463 189 117 67 chr11 71287114 71287395 -50556461 - MTD LTR MaLR -14 405 102 3 1128 1652 192 78 3 chr11 71287395 71287739 -50556117 + ORR1D1 LTR MaLR 1 370 -4 3 1128 1463 189 117 67 chr11 71287739 71287843 -50556013 - MTD LTR MaLR -318 101 1 3 1128 810 295 16 32 chr11 71287843 71288071 -50555785 + ID_B1 SINE B4 33 257 -35 3 1128 647 57 38 0 chr11 71288336 71288441 -50555415 + (CA)n Simple_repeat Simple_repeat 2 110 0 4 1128 193 329 76 0 chr11 71289439 71289518 -50554338 - L2a LINE L2 -282 3144 3060 4 1128 376 314 16 8 chr11 71290067 71290189 -50553667 - Tigger7 DNA MER2_type -11 2480 2358 4 1128 247 214 40 30 chr11 71290279 71290380 -50553476 - Tigger7 DNA MER2_type -119 2372 2271 4 1128 3683 219 166 24 chr11 71290436 71291439 -50552417 + RMER1A Other Other 15 1029 -1 4 1128 946 201 31 59 chr11 71291552 71291774 -50552082 - B3 SINE B2 0 216 1 4 1128 333 336 88 15 chr11 71293608 71293744 -50550112 - MTEa LTR MaLR -229 150 5 4 1128 512 339 31 28 chr11 71293934 71294256 -50549600 - L1MC4a LINE L1 -55 7940 7493 4 1128 335 234 59 69 chr11 71294261 71294362 -50549494 - MTEa LTR MaLR -2 377 278 4 1128 445 272 0 0 chr11 71294517 71294620 -50549236 - PB1D10 SINE Alu -13 104 2 4 1128 293 344 113 13 chr11 71294627 71294936 -50548920 - L1MC4a LINE L1 -370 7512 7173 4 1128 31 26 0 0 chr11 71295159 71295197 -50548659 + AT_rich Low_complexity Low_complexity 1 38 0 4 1128 337 109 31 0 chr11 71295197 71295261 -50548595 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 4 1128 243 325 130 42 chr11 71295862 71296077 -50547779 + MLT1L LTR MaLR 350 583 -27 4 1128 213 253 52 26 chr11 71296119 71296133 -50547723 - 7SLRNA srpRNA srpRNA -233 81 3 4 1128 335 175 16 0 chr11 71296133 71296196 -50547660 - ID_B1 SINE B4 -76 148 85 4 1128 657 256 30 24 chr11 71297075 71297237 -50546619 - B3 SINE B2 -5 211 49 4 1128 2148 196 198 28 chr11 71297237 71297778 -50546078 - RMER19C LTR ERVK 0 902 138 4 1128 353 130 0 0 chr11 71297757 71297811 -50546045 - B3A SINE B2 -144 54 1 4 1128 457 333 32 55 chr11 71297811 71297924 -50545932 - MER20 DNA MER1_type -18 201 86 4 1128 3918 160 88 86 chr11 71297924 71298824 -50545032 + RMER19B LTR ERVK 1 902 0 4 1128 457 333 32 55 chr11 71298824 71298916 -50544940 - MER20 DNA MER1_type -134 85 1 4 1128 342 0 0 0 chr11 71300344 71300382 -50543474 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1128 1136 176 40 5 chr11 71301319 71301519 -50542337 - B3 SINE B2 -5 211 5 4 1128 327 25 0 0 chr11 71301526 71301566 -50542290 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 4 1128 239 231 58 0 chr11 71301568 71301620 -50542236 - B4A SINE B4 -18 274 220 4 1128 349 297 71 9 chr11 71301755 71301867 -50541989 - B3 SINE B2 -1 215 97 4 1128 1994 118 42 19 chr11 71301873 71302185 -50541671 - ORR1A4 LTR MaLR -8 321 3 4 1128 514 252 0 20 chr11 71302186 71302287 -50541569 - B3A SINE B2 -96 102 4 4 1128 1508 283 52 16 chr11 71302321 71302823 -50541033 - Lx7 LINE L1 -149 7324 6805 4 1128 526 280 56 0 chr11 71302833 71302958 -50540898 - Lx7 LINE L1 -789 6684 6553 4 1128 369 0 0 0 chr11 71302965 71303006 -50540850 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 17 2428 196 36 7 chr11 71303007 71303454 -50540402 - MT2A LTR ERVL -73 460 1 4 1129 2072 269 65 38 chr11 71303454 71304719 -50539137 - Lx7 LINE L1 -1313 6383 5096 4 1129 293 358 72 11 chr11 71305025 71305206 -50538650 + MIR SINE MIR 71 262 0 4 1129 253 200 224 13 chr11 71307671 71307747 -50536109 - Lx8 LINE L1 -1567 5906 5815 4 1129 265 313 67 57 chr11 71307876 71307912 -50535944 - B2_Mm2 SINE B2 0 195 160 4 1129 288 0 0 0 chr11 71307912 71307944 -50535912 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1129 551 273 130 2 chr11 71307944 71308100 -50535756 - B3A SINE B2 -27 171 1 4 1129 997 252 129 43 chr11 71310548 71311049 -50532807 - L1MB5 LINE L1 -4 6179 5611 4 1129 223 114 0 43 chr11 71312557 71312603 -50531253 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 4 1129 604 227 104 6 chr11 71312705 71312869 -50530987 + RMER20B LTR ERVK 234 413 -214 4 1129 239 300 0 0 chr11 71314019 71314079 -50529777 + L2c LINE L2 3323 3382 -5 4 1129 303 140 0 0 chr11 71314267 71314317 -50529539 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1129 333 284 14 50 chr11 71314984 71315142 -50528714 - MTEb LTR MaLR -8 371 213 4 1129 230 229 122 67 chr11 71315958 71316122 -50527734 + RLTR20C LTR ERVK 107 279 -255 4 1129 223 207 1 115 chr11 71316785 71316869 -50526987 - MIRc SINE MIR -123 145 64 4 1129 180 0 0 0 chr11 71317144 71317164 -50526692 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1129 433 319 81 27 chr11 71317166 71317390 -50526466 - MLT1H LTR MaLR -292 257 15 4 1129 427 284 8 54 chr11 71318458 71318588 -50525268 - B4A SINE B4 -8 284 161 4 1129 520 268 24 65 chr11 71318684 71318852 -50525004 - B4A SINE B4 -128 164 4 4 1129 208 346 19 56 chr11 71319096 71319203 -50524653 - MIRc SINE MIR -152 116 14 4 1129 4518 8 0 8 chr11 71319243 71319740 -50524116 - MT2_Mm LTR ERVL 0 493 1 4 1129 319 0 0 0 chr11 71319740 71319778 -50524078 - MERVL-int LTR ERVL 0 5485 5448 4 1129 403 167 46 35 chr11 71319778 71319865 -50523991 - ORR1A3-int LTR MaLR -1323 640 553 4 1129 41582 14 14 0 chr11 71319865 71325152 -50518704 - MERVL-int LTR ERVL -125 5360 1 4 1129 4518 8 0 8 chr11 71325152 71325649 -50518207 - MT2_Mm LTR ERVL 0 493 1 4 1129 201 242 0 46 chr11 71325843 71325908 -50517948 + GA-rich Low_complexity Low_complexity 4 65 0 4 1129 270 0 0 0 chr11 71326700 71326730 -50517126 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1129 621 300 115 52 chr11 71327140 71327428 -50516428 - MLT2C1 LTR ERVL -89 308 3 4 1129 227 273 150 62 chr11 71327486 71327646 -50516210 - LTR78 LTR ERV1 -409 895 722 4 1129 261 323 29 48 chr11 71327651 71327755 -50516101 - MLT1G1 LTR MaLR -18 561 370 4 1129 252 333 117 7 chr11 71328041 71328186 -50515670 - LTR78 LTR ERV1 -71 1233 1073 4 1129 1235 188 9 0 chr11 71328339 71328562 -50515294 + URR1B DNA MER1_type 1 225 0 4 1129 198 266 31 0 chr11 71330481 71330545 -50513311 + MIR SINE MIR 73 138 -70 4 1129 349 109 0 30 chr11 71331308 71331374 -50512482 + (GGA)n Simple_repeat Simple_repeat 3 66 0 4 1129 235 310 82 12 chr11 71332084 71332169 -50511687 + LTR33A LTR ERVL 59 149 -371 4 1129 206 32 32 0 chr11 71332428 71332459 -50511397 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1129 184 92 0 84 chr11 71333095 71333166 -50510690 + C-rich Low_complexity Low_complexity 2 66 0 4 1129 348 321 187 18 chr11 71333863 71334205 -50509651 - L2a LINE L2 -1 3425 3026 4 1129 372 22 0 0 chr11 71334247 71334292 -50509564 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1129 1266 125 77 5 chr11 71334476 71334685 -50509171 + URR1B DNA MER1_type 1 224 -1 4 1129 291 366 92 6 chr11 71335246 71335419 -50508437 + LTR50 LTR ERVL 9 196 -599 4 1129 3786 97 31 0 chr11 71336391 71336946 -50506910 + MT2B2 LTR ERVL 1 572 -12 4 1129 2407 162 52 2 chr11 71337051 71337452 -50506404 - MTC LTR MaLR 0 421 1 4 1129 282 317 24 24 chr11 71337606 71337729 -50506127 - MER63B DNA AcHobo 0 436 314 4 1129 486 302 7 7 chr11 71338712 71338852 -50505004 + ID_B1 SINE B4 85 224 0 4 1129 232 163 23 0 chr11 71338852 71338895 -50504961 + GA-rich Low_complexity Low_complexity 1 44 0 4 1129 612 54 11 21 chr11 71339178 71339273 -50504583 + (CCCCCT)n Simple_repeat Simple_repeat 6 99 0 4 1129 2122 158 97 5 chr11 71339448 71339830 -50504026 + MTC LTR MaLR 3 419 -2 4 1129 333 200 27 41 chr11 71340202 71340275 -50503581 - ID4_ SINE ID -3 80 9 4 1129 207 0 0 0 chr11 71340524 71340547 -50503309 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 4 1129 189 0 0 0 chr11 71340929 71340950 -50502906 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1129 486 0 0 0 chr11 71341848 71341902 -50501954 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1129 219 36 0 0 chr11 71341902 71341929 -50501927 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1129 297 128 0 0 chr11 71343352 71343399 -50500457 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1129 841 271 78 12 chr11 71343402 71343660 -50500196 + B4A SINE B4 2 276 -16 4 1129 917 60 8 0 chr11 71343663 71343796 -50500060 + (CA)n Simple_repeat Simple_repeat 1 134 0 4 1129 267 250 44 0 chr11 71343930 71343998 -50499858 + B4 SINE B4 2 72 -220 4 1129 351 121 0 0 chr11 71344023 71344081 -50499775 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1129 216 0 0 0 chr11 71344082 71344106 -50499750 + (CACAT)n Simple_repeat Simple_repeat 1 24 0 4 1129 189 0 0 0 chr11 71344542 71344563 -50499293 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1129 1583 265 47 42 chr11 71344759 71345148 -50498708 - L1MDa LINE L1 -2895 3642 3248 4 1129 3378 37 2 10 chr11 71345148 71345558 -50498298 - MTB_Mm LTR MaLR 0 407 1 4 1129 1583 265 47 42 chr11 71345558 71345791 -50498065 - L1MDa LINE L1 -3290 3247 3017 4 1129 961 262 75 45 chr11 71345868 71346176 -50497680 - Lx8 LINE L1 -62 7411 7095 4 1129 576 266 118 24 chr11 71346180 71346469 -50497387 - L1MDa LINE L1 -3655 2882 2567 4 1129 1191 265 107 6 chr11 71346488 71346852 -50497004 - MTD LTR MaLR -16 403 3 4 1129 243 209 88 0 chr11 71346852 71346943 -50496913 - L1MDa LINE L1 -4070 2563 2465 4 1129 1425 289 94 7 chr11 71346994 71347706 -50496150 - L1MDa LINE L1 -4709 1924 1151 4 1129 852 39 0 0 chr11 71347895 71347999 -50495857 + (CATATA)n Simple_repeat Simple_repeat 4 107 0 4 1129 390 304 8 39 chr11 71348014 71348144 -50495712 - B3A SINE B2 -67 131 6 4 1129 233 315 0 0 chr11 71348175 71348264 -50495592 - MLT1C LTR MaLR -344 123 35 4 1129 1457 197 161 3 chr11 71348356 71348703 -50495153 + MTD LTR MaLR 18 419 0 4 1129 332 225 58 173 chr11 71348712 71348868 -50494988 - MLT1A1 LTR MaLR -3 405 268 4 1129 277 335 85 7 chr11 71349080 71349233 -50494623 - L1MDa LINE L1 -5595 1038 874 4 1129 273 370 58 7 chr11 71349385 71349524 -50494332 - L1MDa LINE L1 -6107 526 381 4 1129 250 345 38 49 chr11 71349748 71349931 -50493925 - L1MD LINE L1 -2270 3876 3690 4 1129 396 0 0 0 chr11 71349941 71349985 -50493871 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1129 300 289 94 6 chr11 71350250 71350410 -50493446 - L1MD LINE L1 -2793 3353 3180 4 1129 725 133 23 0 chr11 71350732 71350860 -50492996 + T-rich Low_complexity Low_complexity 4 134 0 4 1129 513 211 60 75 chr11 71350876 71350966 -50492890 - Lx8 LINE L1 -116 7357 7273 4 1129 791 178 123 71 chr11 71350966 71351178 -50492678 - URR1B DNA MER1_type -1 224 2 4 1129 513 211 60 75 chr11 71351178 71351220 -50492636 - Lx8 LINE L1 -201 7272 7227 4 1129 779 286 21 35 chr11 71351217 71351507 -50492349 + Lx6 LINE L1 7151 7436 -24 4 1129 1099 254 99 31 chr11 71351533 71351886 -50491970 - Lx8 LINE L1 -237 7236 6860 4 1129 188 61 61 0 chr11 71352000 71352033 -50491823 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1129 684 251 59 59 chr11 71352040 71352328 -50491528 + B4A SINE B4 5 292 0 4 1129 1483 246 35 30 chr11 71353759 71354154 -50489702 + MTD LTR MaLR 8 404 -15 4 1129 1033 266 19 15 chr11 71355691 71355962 -50487894 - B4A SINE B4 -7 285 14 4 1129 231 36 0 0 chr11 71355962 71355990 -50487866 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1129 494 277 29 14 chr11 71356203 71356342 -50487514 + RSINE1 SINE B4 3 143 -22 5 1129 348 214 10 19 chr11 71356390 71356499 -50487357 - L1MEe LINE L1 -877 1630 1496 5 1129 227 286 224 29 chr11 71356924 71357169 -50486687 - L1MEe LINE L1 -1572 935 643 5 1129 1231 259 50 6 chr11 71357269 71357607 -50486249 + ORR1E LTR MaLR 1 353 -6 5 1129 274 202 50 12 chr11 71357603 71357683 -50486173 - ORR1D2 LTR MaLR -24 350 268 5 1129 807 212 0 0 chr11 71357777 71358023 -50485833 + GA-rich Low_complexity Low_complexity 1 246 0 5 1129 328 253 28 92 chr11 71358050 71358159 -50485697 - ORR1D2 LTR MaLR -255 115 14 5 1129 507 177 92 78 chr11 71358612 71358753 -50485103 - MTEa LTR MaLR -1 378 236 5 1129 21 36 0 0 chr11 71358918 71358946 -50484910 + AT_rich Low_complexity Low_complexity 1 28 0 5 1129 989 206 5 54 chr11 71359160 71359183 -50484673 - B3 SINE B2 -5 211 194 5 1129 3417 40 15 0 chr11 71359183 71359584 -50484272 + MTB_Mm LTR MaLR 1 407 0 5 1129 989 206 5 54 chr11 71359584 71359781 -50484075 - B3 SINE B2 -23 193 2 5 1129 289 258 82 0 chr11 71360167 71360264 -50483592 - MamGypLTR2c LTR Gypsy -3 1065 961 5 1129 199 274 75 47 chr11 71360921 71361028 -50482828 + MER5B DNA MER1_type 3 112 -66 5 1129 870 144 7 7 chr11 71361116 71361270 -50482586 - URR1A DNA MER1_type -15 211 58 5 1129 459 0 0 0 chr11 71361776 71361827 -50482029 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1129 206 32 32 0 chr11 71362416 71362447 -50481409 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1129 349 306 126 22 chr11 71362848 71363105 -50480751 - MER92B LTR ERV1 -194 360 15 5 1129 291 308 51 0 chr11 71363122 71363239 -50480617 + MamRep1879 DNA hAT? 13 135 -81 5 1129 237 257 106 29 chr11 71363482 71363586 -50480270 + MER5A1 DNA MER1_type 5 116 -50 5 1129 260 301 62 0 chr11 71365102 71365215 -50478641 + L3 LINE CR1 4267 4386 -103 5 1129 771 308 20 31 chr11 71365404 71365659 -50478197 - B4 SINE B4 -36 256 5 5 1129 272 267 133 0 chr11 71365665 71365755 -50478101 - PB1D10 SINE Alu -6 111 10 5 1129 584 236 114 70 chr11 71368301 71368529 -50475327 + MER2 DNA MER2_type 107 344 -1 5 1129 206 214 0 11 chr11 71369659 71369749 -50474107 + GA-rich Low_complexity Low_complexity 2 90 0 5 1129 428 310 76 5 chr11 71370025 71370210 -50473646 + L1MEa LINE L1 21 218 -5852 5 1129 233 299 0 58 chr11 71370638 71370741 -50473115 - MLT1A1 LTR MaLR -2 406 310 5 1129 835 232 6 0 chr11 71371038 71371215 -50472641 - B3A SINE B2 -16 182 5 5 1129 216 67 0 0 chr11 71371248 71371278 -50472578 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1129 312 148 0 0 chr11 71371361 71371422 -50472434 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1129 334 305 123 33 chr11 71372391 71372723 -50471133 - L1M5 LINE L1 -516 5724 5363 5 1129 297 0 0 0 chr11 71372768 71372801 -50471055 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1129 752 269 113 23 chr11 71373180 71373446 -50470410 - Lx8 LINE L1 -6 7467 7178 5 1129 807 190 0 87 chr11 71373650 71373846 -50470010 + ORR1D1 LTR MaLR 3 181 -193 5 1129 363 148 0 0 chr11 71373870 71373958 -50469898 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 1129 508 218 74 31 chr11 71373958 71374126 -50469730 + ORR1D1 LTR MaLR 201 379 0 5 1129 424 319 121 43 chr11 71374152 71374499 -50469357 - MLT1A LTR MaLR 0 374 1 5 1129 23 0 0 0 chr11 71374573 71374596 -50469260 + AT_rich Low_complexity Low_complexity 1 23 0 5 1129 396 0 0 0 chr11 71375119 71375163 -50468693 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1129 381 250 99 10 chr11 71375174 71375275 -50468581 - B3A SINE B2 -47 151 42 5 1129 1309 221 160 3 chr11 71375279 71375629 -50468227 + MTD LTR MaLR 1 405 -14 5 1129 247 285 55 28 chr11 71375833 71376047 -50467809 - L1MEg LINE L1 -4958 1126 866 5 1129 234 222 0 0 chr11 71376822 71376876 -50466980 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1129 483 335 23 11 chr11 71377162 71377337 -50466519 - MER58A DNA MER1_type -27 197 21 5 1129 244 294 154 0 chr11 71377686 71377829 -50466027 - L1M5 LINE L1 -2145 4001 3837 5 1129 214 193 88 0 chr11 71378194 71378251 -50465605 + PB1D9 SINE Alu 59 120 0 5 1129 672 239 120 0 chr11 71378468 71378635 -50465221 - B3 SINE B2 -27 189 3 5 1129 519 31 0 0 chr11 71379005 71379070 -50464786 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1129 315 0 0 0 chr11 71379070 71379104 -50464752 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1129 454 257 36 22 chr11 71379743 71379882 -50463974 - ID_B1 SINE B4 0 224 84 5 1129 502 264 27 40 chr11 71380495 71380645 -50463211 + B1F2 SINE Alu 2 149 0 5 1129 629 336 113 38 chr11 71380951 71381322 -50462534 - MER68 LTR ERVL -164 399 1 5 1129 255 305 0 0 chr11 71382295 71382354 -50461502 - ORR1D1 LTR MaLR -314 60 2 5 1129 22 0 0 0 chr11 71382479 71382501 -50461355 + AT_rich Low_complexity Low_complexity 1 22 0 5 1129 1245 48 0 0 chr11 71382501 71382647 -50461209 - B1_Mm SINE Alu 0 147 2 5 1129 301 29 0 0 chr11 71384132 71384167 -50459689 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1129 387 191 11 22 chr11 71384167 71384349 -50459507 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 5 1129 770 279 108 0 chr11 71384440 71384698 -50459158 - B4A SINE B4 -4 288 3 5 1129 192 372 0 0 chr11 71385751 71385829 -50458027 - L3 LINE CR1 -72 4417 4340 5 1129 229 140 12 147 chr11 71386324 71386409 -50457447 - MIR3 SINE MIR -105 171 95 5 1129 414 0 0 0 chr11 71387402 71387448 -50456408 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1129 761 293 54 14 chr11 71387464 71387741 -50456115 + B4 SINE B4 5 292 0 5 1129 511 316 63 17 chr11 71389055 71389293 -50454563 - MER44B DNA MER2_type -298 252 4 5 1129 26 0 0 0 chr11 71390602 71390628 -50453228 + AT_rich Low_complexity Low_complexity 1 26 0 5 1129 201 74 0 0 chr11 71390796 71390823 -50453033 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 5 1129 198 103 0 0 chr11 71390933 71390962 -50452894 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 5 1129 773 265 97 13 chr11 71391456 71391766 -50452090 - Tigger7 DNA MER2_type -1 2490 2155 5 1129 654 312 133 4 chr11 71391777 71392041 -50451815 - Tigger7 DNA MER2_type -2185 306 9 5 1129 678 322 26 4 chr11 71392940 71393208 -50450648 + MLT1B LTR MaLR 96 369 -21 5 1129 323 297 54 9 chr11 71393448 71393560 -50450296 - PB1D7 SINE Alu -3 117 1 5 1129 1584 309 106 18 chr11 71395456 71396313 -50447543 + L1MD2 LINE L1 5333 6265 -94 5 1129 414 0 0 0 chr11 71397121 71397167 -50446689 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1129 238 272 21 11 chr11 71397178 71397271 -50446585 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 5 1129 435 243 13 6 chr11 71397532 71397641 -50446215 - PB1D10 SINE Alu -22 125 19 5 1129 2804 97 19 12 chr11 71397647 71398064 -50445792 + BGLII_Mus LTR ERVK 3 422 0 5 1129 1287 230 125 3 chr11 71398128 71398481 -50445375 - MTD LTR MaLR -14 405 10 5 1129 342 311 11 0 chr11 71398849 71398939 -50444917 - PB1 SINE Alu -36 91 1 5 1129 180 111 0 0 chr11 71399394 71399421 -50444435 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1129 409 252 55 18 chr11 71399493 71399602 -50444254 - PB1D10 SINE Alu 0 117 5 5 1129 369 0 0 0 chr11 71400404 71400445 -50443411 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1129 21 0 0 0 chr11 71400719 71400740 -50443116 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 213 39 0 0 chr11 71401470 71401496 -50442360 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1129 235 268 39 49 chr11 71401637 71401739 -50442117 - MTEa LTR MaLR -33 346 246 5 1129 185 186 0 106 chr11 71401917 71401983 -50441873 - L3 LINE CR1 -2788 1701 1643 5 1129 512 265 170 32 chr11 71402174 71402392 -50441464 + ORR1E LTR MaLR 7 254 -105 5 1129 2127 222 97 20 chr11 71403219 71403757 -50440099 - Lx7 LINE L1 -768 6928 6350 5 1129 1420 243 85 36 chr11 71403751 71404140 -50439716 + Lx7 LINE L1 6906 7313 -383 5 1129 297 0 0 0 chr11 71404144 71404177 -50439679 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1129 239 269 109 45 chr11 71404221 71404423 -50439433 + Lx7 LINE L1 7482 7696 0 5 1129 410 324 48 90 chr11 71404417 71404897 -50438959 + L1M5 LINE L1 3353 3809 -2334 5 1129 482 193 28 0 chr11 71406371 71406480 -50437376 + PB1D9 SINE Alu 8 119 -1 5 1129 332 225 56 3 chr11 71406502 71406599 -50437257 + L1M5 LINE L1 5429 5526 -647 5 1129 1083 90 0 0 chr11 71406641 71406785 -50437071 + B1_Mus1 SINE Alu 2 145 -3 5 1129 264 59 0 0 chr11 71406785 71406819 -50437037 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1129 2357 95 3 18 chr11 71407046 71407085 -50436771 - ORR1A2 LTR MaLR 0 327 289 5 1129 1082 102 0 0 chr11 71407085 71407232 -50436624 - B1_Mus2 SINE Alu 0 147 1 5 1129 2357 95 3 18 chr11 71407232 71407524 -50436332 - ORR1A2 LTR MaLR -39 288 2 5 1129 249 306 0 0 chr11 71407713 71407785 -50436071 + MIRc SINE MIR 166 237 -31 5 1129 421 296 45 25 chr11 71408586 71408787 -50435069 + RLTR42-int LTR ERVK 1158 1362 -4160 5 1129 2263 137 39 131 chr11 71409151 71409662 -50434194 + RMER4A LTR ERVK 1 464 -2 5 1129 744 159 53 7 chr11 71409666 71409818 -50434038 + RMER4A LTR ERVK 308 466 0 5 1129 291 54 0 0 chr11 71410464 71410501 -50433355 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 5 1129 2801 142 55 32 chr11 71410501 71411026 -50432830 - Lx3C LINE L1 -14 6962 6426 5 1129 1182 32 0 6 chr11 71411506 71411665 -50432191 + ORR1A1 LTR MaLR 1 158 -188 5 1129 618 36 12 0 chr11 71411657 71411741 -50432115 + ORR1A1 LTR MaLR 262 346 0 5 1129 223 208 0 20 chr11 71412733 71412782 -50431074 - MIRb SINE MIR -99 169 122 5 1129 499 275 97 115 chr11 71412925 71413204 -50430652 - B4 SINE B4 -18 274 1 5 1129 1276 110 21 0 chr11 71414932 71415123 -50428733 + B2_Mm2 SINE B2 1 195 0 5 1129 204 125 0 0 chr11 71415125 71415157 -50428699 + (TATG)n Simple_repeat Simple_repeat 4 35 0 5 1129 700 271 0 0 chr11 71415166 71415317 -50428539 - RSINE1 SINE B4 -12 153 3 6 1129 681 319 47 7 chr11 71415390 71415687 -50428169 + L1MEf LINE L1 809 1117 -5125 6 1129 206 328 0 0 chr11 71415760 71415827 -50428029 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1129 21 57 0 0 chr11 71416042 71416077 -50427779 + AT_rich Low_complexity Low_complexity 1 35 0 6 1129 233 307 56 22 chr11 71416088 71416178 -50427678 - B3A SINE B2 -17 181 89 6 1129 678 335 22 30 chr11 71416452 71416547 -50427309 + B4A SINE B4 1 95 -197 6 1129 3307 44 5 2 chr11 71416547 71416955 -50426901 + L1_Mus2 LINE L1 6158 6566 0 6 1129 678 335 22 30 chr11 71416955 71417127 -50426729 + B4A SINE B4 96 266 -26 6 1129 1517 251 3 178 chr11 71417488 71417954 -50425902 + RMER1B Other Other 1 384 -682 6 1129 4405 115 56 5 chr11 71417954 71418611 -50425245 - Lx2 LINE L1 -1 6996 6306 6 1129 2274 225 183 72 chr11 71418611 71419487 -50424369 + RMER1A Other Other 51 1023 -7 6 1129 1076 207 25 62 chr11 71419797 71420152 -50423704 - RLTR15 LTR ERVK -17 342 1 6 1129 235 255 117 45 chr11 71420152 71420263 -50423593 + L1MEf LINE L1 4580 4698 -1448 6 1129 317 299 74 30 chr11 71420352 71420555 -50423301 + L1MEf LINE L1 4982 5193 -953 6 1129 802 306 49 8 chr11 71420621 71420888 -50422968 + B4A SINE B4 1 278 -14 6 1129 709 166 7 7 chr11 71420969 71421063 -50422793 + polypurine Low_complexity Low_complexity 2 96 0 6 1129 1410 56 0 0 chr11 71421063 71421243 -50422613 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1129 709 166 7 7 chr11 71421243 71421294 -50422562 + polypurine Low_complexity Low_complexity 97 147 0 6 1129 631 11 0 108 chr11 71421310 71421412 -50422444 - L1_Mus1 LINE L1 0 6567 6477 6 1129 509 331 29 0 chr11 71421911 71422083 -50421773 - B4A SINE B4 -114 178 2 6 1129 360 0 0 0 chr11 71422435 71422475 -50421381 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1129 421 364 17 0 chr11 71423005 71423181 -50420675 - MER58A DNA MER1_type 0 224 46 6 1129 1606 236 152 10 chr11 71423393 71423872 -50419984 - RMER15 LTR ERVL 0 575 29 6 1129 246 100 77 77 chr11 71423888 71423953 -50419903 - RMER15 LTR ERVL -510 65 1 6 1129 312 161 0 0 chr11 71424973 71425035 -50418821 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 6 1129 213 346 12 0 chr11 71425398 71425479 -50418377 + MIR SINE MIR 98 179 -83 6 1129 2627 35 0 21 chr11 71425573 71425926 -50417930 - L1_Mus1 LINE L1 0 6567 6244 6 1129 23 33 0 0 chr11 71427715 71427745 -50416111 + AT_rich Low_complexity Low_complexity 1 30 0 6 1129 225 0 0 0 chr11 71427927 71427952 -50415904 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1129 279 0 0 0 chr11 71427952 71427982 -50415874 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1129 995 128 12 0 chr11 71428497 71428661 -50415195 - URR1B DNA MER1_type -2 223 58 6 1129 469 289 63 19 chr11 71429102 71429261 -50414595 - MER5B DNA MER1_type -7 171 6 6 1129 250 312 94 16 chr11 71429394 71429521 -50414335 + MER45A DNA Tip100 9 145 -33 6 1129 491 272 56 62 chr11 71429642 71429803 -50414053 + B3A SINE B2 1 160 -38 6 1129 231 261 106 96 chr11 71430893 71431092 -50412764 + L1MC LINE L1 5612 5812 -2070 6 1129 284 314 73 53 chr11 71431107 71431442 -50412414 - MLT1A1 LTR MaLR -5 403 23 6 1129 521 297 6 12 chr11 71431706 71431900 -50411956 + L1M3 LINE L1 5488 5679 -499 6 1129 1767 138 51 60 chr11 71432013 71432345 -50411511 - ORR1A4 LTR MaLR 0 329 1 6 1129 622 235 20 91 chr11 71432363 71432560 -50411296 + B3A SINE B2 16 198 0 6 1129 579 294 50 47 chr11 71432950 71433228 -50410628 + L1M5 LINE L1 5385 5663 -461 6 1129 666 237 32 68 chr11 71433440 71433630 -50410226 + B3A SINE B2 1 183 -15 6 1129 222 91 0 0 chr11 71433827 71433860 -50409996 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1130 216 264 0 0 chr11 71434417 71434470 -50409386 + MIR3 SINE MIR 109 161 -47 6 1130 252 301 0 24 chr11 71434983 71435068 -50408788 + 4.5SRNA scRNA scRNA 4 86 -8 6 1130 302 299 0 0 chr11 71436908 71436985 -50406871 + ID4_ SINE ID 2 78 -5 6 1130 648 38 0 0 chr11 71436985 71437064 -50406792 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 6 1130 1036 124 6 6 chr11 71437064 71437242 -50406614 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 6 1130 205 171 0 0 chr11 71437242 71437277 -50406579 + A-rich Low_complexity Low_complexity 4 38 0 6 1130 225 299 85 132 chr11 71438123 71438404 -50405452 - ORR1E LTR MaLR -21 338 71 6 1130 441 0 0 0 chr11 71438489 71438538 -50405318 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1130 462 18 0 0 chr11 71438620 71438675 -50405181 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 6 1130 213 243 113 70 chr11 71438909 71439024 -50404832 + L2a LINE L2 3301 3420 -6 6 1130 1328 261 57 33 chr11 71439576 71440087 -50403769 + RMER5 LTR ERV1 10 532 -2 6 1130 428 237 35 21 chr11 71440506 71440648 -50403208 - L1MB3 LINE L1 -2 6181 6038 6 1130 207 0 0 0 chr11 71440869 71440892 -50402964 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1130 1274 299 30 30 chr11 71441100 71441527 -50402329 - Lx8 LINE L1 -77 7396 6970 6 1130 191 294 0 0 chr11 71441560 71441611 -50402245 - MIRc SINE MIR -51 217 167 6 1130 2320 98 85 3 chr11 71441975 71442364 -50401492 - BGLII LTR ERVK 0 421 1 6 1130 284 262 236 82 chr11 71442505 71442725 -50401131 - MLT1D LTR MaLR -11 494 241 6 1130 795 295 161 31 chr11 71443389 71443837 -50400019 - LTR40a LTR ERVL -5 514 9 6 1130 657 289 22 79 chr11 71444309 71444538 -50399318 + B3A SINE B2 1 216 0 6 1130 512 137 57 48 chr11 71445604 71445938 -50397918 + (TG)n Simple_repeat Simple_repeat 1 337 0 6 1130 709 269 18 0 chr11 71446218 71446389 -50397467 + L1M3 LINE L1 5566 5739 -432 6 1130 681 144 0 0 chr11 71446397 71446515 -50397341 + (GA)n Simple_repeat Simple_repeat 1 118 0 6 1130 367 256 25 107 chr11 71446825 71447022 -50396834 - MER57F LTR ERV1 -255 181 1 6 1130 435 234 63 14 chr11 71447105 71447248 -50396608 + B4 SINE B4 12 161 -131 6 1130 724 21 21 0 chr11 71447452 71447546 -50396310 + (GA)n Simple_repeat Simple_repeat 2 97 0 6 1130 216 158 0 0 chr11 71447660 71447698 -50396158 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 6 1130 420 200 26 35 chr11 71448788 71448902 -50394954 + MTE2b LTR MaLR 1 113 -266 6 1130 2787 141 19 25 chr11 71448938 71449463 -50394393 + RLTR28 LTR ERVL 1 522 -2 6 1130 669 204 142 0 chr11 71449487 71449649 -50394207 + MTE2b LTR MaLR 195 379 0 6 1130 266 164 0 18 chr11 71450091 71450147 -50393709 + GA-rich Low_complexity Low_complexity 2 56 0 6 1130 401 332 34 78 chr11 71451767 71452083 -50391773 + LTR81C LTR ERV1? 867 1254 -96 6 1130 423 0 0 0 chr11 71452279 71452326 -50391530 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1130 321 47 0 0 chr11 71452335 71452378 -50391478 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1130 4701 162 14 6 chr11 71452594 71453391 -50390465 - Lx2A LINE L1 -51 5832 5030 6 1130 5214 87 13 10 chr11 71453389 71454109 -50389747 + Lx2A LINE L1 5825 6523 -485 6 1130 440 266 244 35 chr11 71454213 71454532 -50389324 - MLT1F1 LTR MaLR -29 540 155 6 1130 252 286 39 0 chr11 71454540 71454617 -50389239 - ID4_ SINE ID -2 81 2 6 1130 406 247 25 0 chr11 71454626 71454747 -50389109 - B1F SINE Alu -9 140 21 6 1130 439 344 58 0 chr11 71454752 71454906 -50388950 - MLT1F1 LTR MaLR -401 168 6 6 1130 285 319 149 5 chr11 71455470 71455684 -50388172 + L2b LINE L2 2946 3190 -185 6 1130 213 371 14 50 chr11 71456538 71456759 -50387097 + L3 LINE CR1 2732 2944 -1545 6 1130 294 333 94 0 chr11 71457513 71457672 -50386184 - MLT1E LTR MaLR -1 652 479 6 1130 243 326 23 111 chr11 71459079 71459296 -50384560 - LTR85b LTR Gypsy? -157 627 430 6 1130 358 0 81 0 chr11 71459587 71459649 -50384207 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1130 771 116 18 0 chr11 71459663 71459775 -50384081 - PB1D9 SINE Alu -5 115 2 6 1130 408 334 212 19 chr11 71459864 71460286 -50383570 + MLT1G1 LTR MaLR 3 506 -73 6 1130 324 304 153 12 chr11 71461688 71461858 -50381998 - MIR SINE MIR -20 242 49 6 1130 1655 231 25 11 chr11 71462384 71462752 -50381104 - MTD LTR MaLR -46 373 1 6 1130 469 305 118 32 chr11 71462852 71463072 -50380784 - Tigger5 DNA MER2_type -2164 242 4 6 1130 326 283 9 45 chr11 71464261 71464372 -50379484 + GA-rich Low_complexity Low_complexity 3 109 0 6 1130 1673 242 90 35 chr11 71467009 71467489 -50376367 - L1MC1 LINE L1 -195 6313 5808 6 1130 343 294 25 68 chr11 71467618 71467855 -50376001 - L1MC1 LINE L1 -948 5373 5147 6 1130 243 140 0 0 chr11 71467873 71467923 -50375933 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 6 1130 1298 62 0 11 chr11 71467925 71468103 -50375753 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 6 1130 380 220 33 0 chr11 71468138 71468229 -50375627 - L1MC1 LINE L1 -1200 5121 5028 6 1130 265 314 33 17 chr11 71468256 71468376 -50375480 + MTD LTR MaLR 4 125 -294 6 1130 459 52 0 0 chr11 71468412 71468470 -50375386 + (CTTG)n Simple_repeat Simple_repeat 2 59 0 6 1130 453 164 9 46 chr11 71468472 71468581 -50375275 - B1_Mm SINE Alu -6 141 37 6 1130 991 257 93 0 chr11 71468589 71468869 -50374987 + MTD LTR MaLR 114 419 0 6 1130 4104 285 107 39 chr11 71468869 71469791 -50374065 - L1MC1 LINE L1 -1289 5032 4070 6 1130 793 308 32 14 chr11 71469791 71470071 -50373785 - B4A SINE B4 -6 286 2 6 1130 4104 285 107 39 chr11 71470071 71470136 -50373720 - L1MC1 LINE L1 -2252 4069 3942 6 1130 412 294 31 61 chr11 71470136 71470299 -50373557 - RSINE1 SINE B4 -5 160 3 6 1130 4104 285 107 39 chr11 71470299 71471766 -50372090 - L1MC1 LINE L1 -2380 3941 2412 6 1130 264 295 166 16 chr11 71471772 71471965 -50371891 - Lx8 LINE L1 0 7473 7252 6 1130 517 275 139 37 chr11 71471977 71472222 -50371634 + Lx8 LINE L1 6984 7253 -220 6 1130 613 87 28 3 chr11 71472282 71472383 -50371473 + MTB LTR MaLR 1 104 -317 6 1130 1709 125 28 28 chr11 71472396 71472718 -50371138 - RLTRETN_Mm LTR ERVK 0 322 1 6 1130 1928 80 11 0 chr11 71472718 71472975 -50370881 + MTB LTR MaLR 141 400 0 6 1130 2013 280 117 51 chr11 71472975 71473562 -50370294 - L1MC1 LINE L1 -4139 2369 1757 6 1130 4864 68 22 5 chr11 71473562 71474207 -50369649 - L1Md_F2 LINE L1 0 6582 5927 6 1130 2013 280 117 51 chr11 71474207 71475218 -50368638 - L1MC1 LINE L1 -4752 1756 655 6 1130 1139 148 118 5 chr11 71475218 71475421 -50368435 + URR1A DNA MER1_type 1 226 0 6 1130 2013 280 117 51 chr11 71475421 71475502 -50368354 - L1MC1 LINE L1 -5854 654 580 6 1130 318 322 111 14 chr11 71475516 71475724 -50368132 - L1MC1 LINE L1 -6249 259 32 6 1130 827 301 6 97 chr11 71476741 71477080 -50366776 - ORR1E LTR MaLR 0 359 52 6 1130 434 340 111 29 chr11 71477543 71477885 -50365971 - MLT1D LTR MaLR -105 400 31 6 1130 227 300 0 59 chr11 71478095 71478180 -50365676 + MLT1A1 LTR MaLR 268 347 -61 7 1130 367 242 36 50 chr11 71478170 71478309 -50365547 - ORR1D2 LTR MaLR -27 343 207 7 1130 472 119 17 0 chr11 71478699 71478779 -50365077 + B1_Mus1 SINE Alu 2 84 -36 7 1130 575 179 0 25 chr11 71480976 71481096 -50362760 + Lx4A LINE L1 6936 7052 -6 7 1130 369 0 0 0 chr11 71481131 71481172 -50362684 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1130 462 36 0 0 chr11 71481172 71481227 -50362629 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1130 256 248 67 58 chr11 71481235 71481355 -50362501 - MLT1A1 LTR MaLR -23 385 265 7 1130 28 0 0 0 chr11 71481442 71481470 -50362386 + AT_rich Low_complexity Low_complexity 1 28 0 7 1130 558 275 61 55 chr11 71481503 71481684 -50362172 - B3A SINE B2 -16 182 1 7 1130 583 281 62 10 chr11 71482125 71482319 -50361537 - MLT1H1 LTR MaLR -192 363 160 7 1130 1301 218 103 9 chr11 71485578 71485907 -50357949 - MTE2a LTR MaLR 0 379 20 7 1130 749 40 0 10 chr11 71486567 71486669 -50357187 + (TTA)n Simple_repeat Simple_repeat 3 103 0 7 1130 381 43 0 0 chr11 71487106 71487153 -50356703 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1130 195 42 0 0 chr11 71488495 71488519 -50355337 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 1130 268 276 0 22 chr11 71488519 71488608 -50355248 + MLT1C LTR MaLR 38 124 -343 7 1130 429 361 14 24 chr11 71488640 71488847 -50355009 + MLT1C LTR MaLR 219 423 -44 7 1130 279 0 0 0 chr11 71489720 71489751 -50354105 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1130 491 310 66 5 chr11 71489753 71489855 -50354001 + MER2 DNA MER2_type 116 226 -119 7 1130 279 0 0 0 chr11 71489855 71489886 -50353970 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1130 491 310 66 5 chr11 71489886 71489994 -50353862 + MER2 DNA MER2_type 227 338 -7 7 1130 269 339 22 72 chr11 71490166 71490347 -50353509 + B4A SINE B4 7 178 -114 7 1130 1148 50 7 0 chr11 71490432 71490571 -50353285 - B1_Mus1 SINE Alu -8 140 1 7 1130 406 284 30 7 chr11 71490968 71491103 -50352753 + Charlie1a DNA MER1_type 18 155 -1300 7 1130 436 287 51 14 chr11 71491135 71491273 -50352583 + B4 SINE B4 2 144 -148 7 1130 304 0 0 160 chr11 71491274 71491430 -50352426 + (CAGAG)n Simple_repeat Simple_repeat 5 135 0 7 1130 641 211 0 84 chr11 71491433 71491599 -50352257 + B4 SINE B4 127 278 -14 7 1130 1389 270 97 36 chr11 71491699 71492287 -50351569 + Charlie1a DNA MER1_type 339 962 -493 7 1130 412 293 146 6 chr11 71492315 71492473 -50351383 + B3A SINE B2 1 180 -18 7 1130 25 0 0 0 chr11 71492586 71492611 -50351245 + AT_rich Low_complexity Low_complexity 1 25 0 7 1130 279 0 0 0 chr11 71492953 71492984 -50350872 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1130 505 269 56 25 chr11 71493135 71493295 -50350561 + MER5A DNA MER1_type 5 169 -20 7 1130 234 131 16 47 chr11 71493686 71493750 -50350106 + CT-rich Low_complexity Low_complexity 1 62 0 7 1130 520 333 111 43 chr11 71494598 71495247 -50348609 - L1ME1 LINE L1 -41 6933 6241 7 1130 1777 155 79 3 chr11 71495252 71495595 -50348261 + ORR1D1 LTR MaLR 6 374 0 7 1130 339 264 101 20 chr11 71495637 71495829 -50348027 - L1ME1 LINE L1 -765 6209 6006 7 1130 368 248 87 8 chr11 71495844 71495970 -50347886 - L1ME1 LINE L1 -2412 4529 4394 7 1130 483 326 120 22 chr11 71496009 71496376 -50347480 - L1MD LINE L1 -3542 2604 2202 7 1130 36 70 0 0 chr11 71496491 71496562 -50347294 + AT_rich Low_complexity Low_complexity 1 71 0 7 1130 264 185 37 0 chr11 71496606 71496660 -50347196 - L1ME1 LINE L1 -2492 4449 4394 7 1130 441 0 0 0 chr11 71496837 71496886 -50346970 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1130 261 0 0 0 chr11 71496886 71496914 -50346942 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1130 798 317 30 16 chr11 71497481 71497911 -50345945 - L1ME1 LINE L1 -4166 2856 2421 7 1130 824 335 46 5 chr11 71498046 71498478 -50345378 + L1MCc LINE L1 1006 1455 -4968 7 1130 258 323 40 10 chr11 71498898 71498998 -50344858 - L1ME1 LINE L1 -5954 469 367 7 1130 444 172 0 0 chr11 71499183 71499270 -50344586 + CT-rich Low_complexity Low_complexity 1 87 0 7 1130 477 0 0 0 chr11 71499278 71499331 -50344525 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1130 458 255 0 0 chr11 71499346 71499444 -50344412 - B4A SINE B4 -6 286 189 7 1130 351 241 17 43 chr11 71499869 71499986 -50343870 - L1ME1 LINE L1 -6284 139 26 7 1130 730 311 196 68 chr11 71500148 71500610 -50343246 - MLT1G1 LTR MaLR -80 515 1 1 1130 182 370 12 0 chr11 71500816 71500897 -50342959 + MIRc SINE MIR 53 134 -134 2 1130 191 214 0 23 chr11 71500900 71500943 -50342913 + MIRb SINE MIR 191 232 -36 3 1130 198 0 0 0 chr11 71501295 71501317 -50342539 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 1130 499 212 0 0 chr11 71501824 71501909 -50341947 + RMER30 DNA MER1_type 7 91 -111 5 1130 194 269 30 0 chr11 71502118 71502185 -50341671 + MIRb SINE MIR 1 69 -199 6 1130 479 17 0 16 chr11 71503242 71503303 -50340553 + (TTTTG)n Simple_repeat Simple_repeat 4 63 0 7 1130 1112 45 0 29 chr11 71503303 71503442 -50340414 - B1_Mm SINE Alu -12 135 1 8 1130 183 67 21 62 chr11 71503836 71503884 -50339972 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 9 1130 2143 213 19 5 chr11 71504413 71504832 -50339024 + Lx6 LINE L1 7010 7434 -26 1 1130 369 0 0 0 chr11 71505266 71505307 -50338549 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1130 456 278 57 26 chr11 71505445 71505632 -50338224 - Lx9 LINE L1 -407 5771 5592 1 1130 2787 163 53 8 chr11 71505701 71506195 -50337661 + RMER20A LTR ERVK 1 516 0 1 1130 894 267 57 34 chr11 71506202 71506551 -50337305 - L1_Mur3 LINE L1 -335 5545 5189 1 1130 25 0 0 0 chr11 71507028 71507053 -50336803 + GC_rich Low_complexity Low_complexity 1 25 0 1 1130 338 310 46 36 chr11 71507366 71507560 -50336296 - L1MC3 LINE L1 -4 7781 7586 1 1130 26 30 0 0 chr11 71507572 71507605 -50336251 + AT_rich Low_complexity Low_complexity 1 33 0 1 1130 396 59 0 0 chr11 71507685 71507736 -50336120 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1130 611 311 11 51 chr11 71507736 71507912 -50335944 - B3 SINE B2 -47 169 1 1 1130 1414 302 97 18 chr11 71507915 71508575 -50335281 - L1MC3 LINE L1 -188 7597 6886 1 1130 288 0 0 0 chr11 71508619 71508651 -50335205 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1130 614 13 13 0 chr11 71508652 71508727 -50335129 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1130 719 194 37 7 chr11 71508746 71508881 -50334975 - B3A SINE B2 -57 141 3 2 1130 279 321 99 12 chr11 71508893 71509054 -50334802 - L1MC3 LINE L1 -926 6859 6685 1 1130 465 352 124 0 chr11 71509055 71509248 -50334608 + Tigger7 DNA MER2_type 1 217 -2274 2 1130 264 203 70 28 chr11 71509429 71509500 -50334356 + ID4_ SINE ID 2 75 -8 2 1130 1422 265 47 69 chr11 71509938 71510432 -50333424 - Lx5 LINE L1 -3 7047 6565 2 1130 2460 147 57 14 chr11 71511214 71511494 -50332362 - RLTR26 LTR ERVK -202 440 155 2 1130 306 0 0 0 chr11 71511494 71511528 -50332328 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1130 2460 147 57 14 chr11 71511528 71511669 -50332187 - RLTR26 LTR ERVK -488 154 3 2 1130 773 300 99 13 chr11 71511669 71512041 -50331815 - L1MC3 LINE L1 -1172 6613 6210 1 1130 388 309 128 9 chr11 71512054 71512273 -50331583 - L1MC3 LINE L1 -1619 6166 5922 1 1130 518 308 35 0 chr11 71512274 71512446 -50331410 - Tigger5 DNA MER2_type -1 2405 2228 2 1130 305 318 155 28 chr11 71512449 71512766 -50331090 - L1MC3 LINE L1 -1183 6699 6343 2 1130 238 209 14 56 chr11 71512990 71513061 -50330795 + RLTR25B LTR ERVK 428 495 -533 3 1130 461 141 26 0 chr11 71513006 71513084 -50330772 + PB1D9 SINE Alu 41 120 0 3 1130 335 121 0 17 chr11 71513085 71513144 -50330712 + (GGA)n Simple_repeat Simple_repeat 2 59 0 3 1130 630 60 0 0 chr11 71513144 71513227 -50330629 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 3 1130 346 247 0 0 chr11 71513230 71513303 -50330553 - L1MC3 LINE L1 -1640 6145 6073 2 1130 240 307 93 0 chr11 71513399 71513549 -50330307 - L1MC3 LINE L1 -374 5866 5703 2 1130 528 203 116 36 chr11 71513551 71513689 -50330167 + B1F2 SINE Alu 1 149 0 3 1130 198 319 91 81 chr11 71513889 71513988 -50329868 - MIRc SINE MIR -67 201 102 3 1130 203 261 0 0 chr11 71514255 71514301 -50329555 + GA-rich Low_complexity Low_complexity 2 47 0 3 1130 252 0 0 0 chr11 71514522 71514550 -50329306 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1130 1433 71 16 0 chr11 71514866 71515049 -50328807 - B2_Mm2 SINE B2 -8 187 2 3 1130 590 248 75 0 chr11 71515060 71515193 -50328663 - B1_Mur1 SINE Alu -6 143 1 3 1130 484 260 64 46 chr11 71516089 71516307 -50327549 + L1M5 LINE L1 4229 4450 -1696 4 1130 207 307 0 0 chr11 71516618 71516693 -50327163 + CT-rich Low_complexity Low_complexity 1 75 0 4 1130 194 105 26 0 chr11 71516694 71516732 -50327124 + (TCTCTG)n Simple_repeat Simple_repeat 3 41 0 4 1130 206 220 91 60 chr11 71517538 71517621 -50326235 + MIRc SINE MIR 87 186 -90 4 1130 1637 268 11 58 chr11 71517861 71517882 -50325974 - MT2A LTR ERVL -24 509 489 4 1130 359 197 13 13 chr11 71517882 71517959 -50325897 + ID4 SINE ID 2 78 -5 4 1130 1637 268 11 58 chr11 71517959 71518471 -50325385 - MT2A LTR ERVL -45 488 1 4 1130 508 296 97 58 chr11 71518816 71519282 -50324574 - L1ME2 LINE L1 -100 6064 5581 4 1130 210 290 0 0 chr11 71520495 71520588 -50323268 + G-rich Low_complexity Low_complexity 3 95 0 4 1130 678 25 0 0 chr11 71521869 71521949 -50321907 + (GGAA)n Simple_repeat Simple_repeat 2 81 0 4 1130 1218 62 0 0 chr11 71522038 71522184 -50321672 + B1_Mm SINE Alu 2 147 0 4 1130 237 65 0 0 chr11 71522186 71522217 -50321639 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1130 453 19 0 0 chr11 71522532 71522586 -50321270 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1130 805 128 12 27 chr11 71522963 71523220 -50320636 + G-rich Low_complexity Low_complexity 1 253 0 5 1130 1200 111 0 0 chr11 71523220 71523400 -50320456 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1130 276 315 0 0 chr11 71523654 71523727 -50320129 - B4A SINE B4 -2 290 218 5 1130 332 330 98 20 chr11 71523748 71523857 -50319999 - Lx8 LINE L1 -2 7471 7358 5 1130 486 49 0 0 chr11 71523857 71523918 -50319938 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 5 1130 332 330 98 20 chr11 71523918 71524012 -50319844 - Lx8 LINE L1 -116 7357 7252 5 1130 245 283 141 73 chr11 71524045 71524251 -50319605 - L1ME3A LINE L1 -78 6095 5876 5 1130 371 295 122 20 chr11 71524300 71524524 -50319332 - L1ME3A LINE L1 -411 5751 5505 5 1130 338 324 97 18 chr11 71524638 71524855 -50319001 - L1ME3A LINE L1 -798 5348 5115 5 1130 228 35 0 0 chr11 71524944 71524973 -50318883 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1130 423 174 0 0 chr11 71525087 71525173 -50318683 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1130 307 316 111 20 chr11 71525481 71525778 -50318078 - L1ME3A LINE L1 -1717 4429 4106 5 1130 963 294 3 20 chr11 71527031 71527326 -50316530 + B4A SINE B4 3 292 0 6 1130 768 22 0 0 chr11 71527340 71527430 -50316426 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 1130 595 37 24 0 chr11 71527439 71527521 -50316335 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 6 1130 381 224 8 16 chr11 71527536 71527663 -50316193 + G-rich Low_complexity Low_complexity 4 129 0 6 1130 841 76 22 15 chr11 71527670 71527804 -50316052 + (GAGAA)n Simple_repeat Simple_repeat 5 139 0 6 1130 932 271 73 133 chr11 71528035 71528525 -50315331 - MT2A LTR ERVL 0 533 73 6 1130 514 269 89 30 chr11 71528425 71528628 -50315228 - MTD LTR MaLR -204 215 1 6 1130 2253 192 20 5 chr11 71528748 71529152 -50314704 - MTD LTR MaLR -5 414 5 6 1130 572 254 101 52 chr11 71529800 71530208 -50313648 + MT2A LTR ERVL 1 567 0 6 1130 858 241 92 0 chr11 71530352 71530601 -50313255 - Lx7 LINE L1 -1795 5901 5630 6 1130 315 245 64 28 chr11 71531050 71531159 -50312697 + MER5A1 DNA MER1_type 6 118 -48 7 1130 1736 236 74 43 chr11 71532205 71532692 -50311164 - RLTR11A2 LTR ERVK -25 502 1 7 1130 3262 11 0 8 chr11 71533469 71533838 -50310018 + L1Md_A LINE L1 6217 6582 0 7 1130 352 248 88 35 chr11 71533942 71534055 -50309801 + PB1D7 SINE Alu 2 120 0 7 1130 258 314 23 23 chr11 71534189 71534277 -50309579 - MIRb SINE MIR -67 201 114 7 1130 304 264 0 0 chr11 71534400 71534472 -50309384 - B4A SINE B4 -5 287 216 7 1130 1052 281 35 28 chr11 71535059 71535070 -50308786 - B4A SINE B4 -2 290 281 7 1130 576 0 0 0 chr11 71535070 71535134 -50308722 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1130 1052 281 35 28 chr11 71535134 71535408 -50308448 - B4A SINE B4 -12 280 3 7 1130 229 265 0 0 chr11 71535423 71535472 -50308384 + G-rich Low_complexity Low_complexity 2 50 0 7 1130 324 321 29 91 chr11 71535559 71535635 -50308221 - RSINE1 SINE B4 0 165 95 7 1130 4499 103 7 109 chr11 71535635 71536098 -50307758 - RMER17A LTR ERVK 0 751 321 8 1130 1158 62 0 20 chr11 71536098 71536247 -50307609 + B1_Mus2 SINE Alu 2 147 0 8 1130 4499 103 7 109 chr11 71536247 71536619 -50307237 - RMER17A LTR ERVK -431 320 1 8 1130 324 321 29 91 chr11 71536619 71536717 -50307139 - RSINE1 SINE B4 -71 94 2 7 1130 428 328 117 15 chr11 71536721 71536987 -50306869 - L2 LINE L2 -619 2800 2508 8 1130 366 331 21 21 chr11 71537318 71537460 -50306396 + MIR SINE MIR 6 147 -115 8 1130 349 311 78 137 chr11 71537723 71537794 -50306062 + ORR1E LTR MaLR 20 104 -255 8 1130 1130 244 36 77 chr11 71537794 71538185 -50305671 + MTE2a LTR MaLR 1 375 -4 8 1130 349 311 78 137 chr11 71538185 71538471 -50305385 + ORR1E LTR MaLR 105 356 -3 8 1130 312 272 11 0 chr11 71538637 71538729 -50305127 + (CAT)n Simple_repeat Simple_repeat 3 95 0 8 1130 190 164 18 18 chr11 71539391 71539447 -50304409 + (TTAGGG)n Simple_repeat Simple_repeat 2 57 0 8 1130 347 221 13 0 chr11 71539517 71539594 -50304262 - MTEb LTR MaLR 0 379 302 8 1130 233 262 45 15 chr11 71540858 71540924 -50302932 - MIRb SINE MIR -81 187 120 8 1130 311 340 0 36 chr11 71540963 71541073 -50302783 + MLT1A1 LTR MaLR 16 121 -287 9 1130 936 115 70 0 chr11 71541389 71541545 -50302311 + URR1B DNA MER1_type 59 225 0 9 1130 387 0 0 0 chr11 71541594 71541637 -50302219 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1130 504 0 0 0 chr11 71541637 71541692 -50302164 + (GA)n Simple_repeat Simple_repeat 2 57 0 9 1130 654 201 0 73 chr11 71541760 71541910 -50301946 + MER3 DNA MER1_type 66 204 -5 9 1130 413 326 35 1 chr11 71542575 71542718 -50301138 - MIRb SINE MIR -31 177 30 9 1130 338 220 59 35 chr11 71543331 71543416 -50300440 - MER117 DNA MER1_type 0 197 111 9 1130 422 318 87 48 chr11 71543624 71543832 -50300024 - B4A SINE B4 -18 274 59 9 1130 190 353 8 65 chr11 71543950 71544074 -50299782 - L3 LINE CR1 -35 4454 4338 9 1130 233 226 19 0 chr11 71544369 71544422 -50299434 - L3 LINE CR1 -277 4212 4159 9 1130 362 298 79 0 chr11 71544667 71544781 -50299075 - ORR1E LTR MaLR -233 126 4 9 1130 1183 68 7 0 chr11 71544809 71544955 -50298901 - B1_Mus2 SINE Alu 0 147 1 1 1130 1292 77 38 11 chr11 71545051 71545234 -50298622 - B2_Mm2 SINE B2 -7 188 1 1 1130 994 291 21 4 chr11 71545782 71546061 -50297795 + B4A SINE B4 5 288 -4 1 1130 294 29 0 0 chr11 71546081 71546116 -50297740 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1130 969 33 0 0 chr11 71546116 71546236 -50297620 + (GA)n Simple_repeat Simple_repeat 2 122 0 1 1130 376 359 59 45 chr11 71546244 71546533 -50297323 + LTR79 LTR ERVL 227 519 -8 1 1130 467 253 6 27 chr11 71546617 71546800 -50297056 + GA-rich Low_complexity Low_complexity 2 180 0 1 1130 267 355 65 99 chr11 71546824 71547196 -50296660 - ORR1E LTR MaLR 0 359 1 1 1130 1940 101 160 3 chr11 71547250 71547568 -50296288 - RLTR9A LTR ERVK 0 368 1 1 1130 221 258 0 29 chr11 71548886 71548954 -50294902 + GA-rich Low_complexity Low_complexity 4 69 0 1 1130 360 97 0 0 chr11 71549439 71549501 -50294355 + (T)n Simple_repeat Simple_repeat 1 62 0 1 1130 189 0 0 0 chr11 71550774 71550795 -50293061 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1 1130 240 315 11 21 chr11 71551128 71551222 -50292634 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 1 1130 295 276 184 43 chr11 71551361 71551524 -50292332 + Kanga2_a DNA Tc2 4 189 -699 1 1130 488 230 51 34 chr11 71551538 71551655 -50292201 + Kanga2_a DNA Tc2 234 352 -536 1 1130 414 305 68 34 chr11 71552658 71552776 -50291080 + RSINE1 SINE B4 3 119 -46 1 1130 432 0 0 0 chr11 71552776 71552824 -50291032 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1130 414 305 68 34 chr11 71552824 71552851 -50291005 + RSINE1 SINE B4 120 153 -12 1 1130 261 0 0 0 chr11 71552851 71552880 -50290976 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1130 215 258 45 22 chr11 71553457 71553558 -50290298 - MIRc SINE MIR -115 161 63 1 1130 372 296 59 80 chr11 71554317 71554504 -50289352 + MIRb SINE MIR 77 259 -9 1 1130 413 180 11 0 chr11 71554562 71554651 -50289205 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1130 4065 145 101 75 chr11 71555003 71555882 -50287974 - RMER19B LTR ERVK 0 902 1 1 1130 736 296 50 25 chr11 71557231 71557592 -50286264 + L1MD3 LINE L1 7613 7982 -13 1 1130 1618 273 98 69 chr11 71558132 71558629 -50285227 - Tigger1 DNA MER2_type -424 1994 1470 1 1130 1154 50 0 0 chr11 71558629 71558770 -50285086 - B1_Mus1 SINE Alu -6 142 2 1 1130 1618 273 98 69 chr11 71558770 71558867 -50284989 - Tigger1 DNA MER2_type -949 1469 1383 1 1130 3016 63 2 8 chr11 71558966 71559364 -50284492 - MTA_Mm LTR MaLR 0 396 1 1 1130 921 299 47 98 chr11 71560289 71560675 -50283181 - MTE2b LTR MaLR -11 368 3 1 1130 1271 122 23 14 chr11 71560704 71560921 -50282935 - URR1A DNA MER1_type -2 224 6 1 1130 435 283 16 16 chr11 71560924 71561046 -50282810 + B1F SINE Alu 28 149 0 1 1130 306 216 0 0 chr11 71561604 71561678 -50282178 + G-rich Low_complexity Low_complexity 2 75 0 1 1130 226 366 81 47 chr11 71562589 71562680 -50281176 + MER45A DNA Tip100 1 92 -86 1 1130 2092 36 32 11 chr11 71562680 71562957 -50280899 + L1Md_F3 LINE L1 6301 6583 -1 1 1130 226 366 81 47 chr11 71562957 71563037 -50280819 + MER45A DNA Tip100 93 178 0 1 1130 396 0 0 0 chr11 71563660 71563704 -50280152 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1131 268 253 63 0 chr11 71567705 71567800 -50276056 - L1MA7 LINE L1 -3 6288 6188 1 1131 446 226 136 146 chr11 71567854 71567953 -50275903 - B4A SINE B4 0 292 220 1 1131 382 209 233 9 chr11 71567953 71568069 -50275787 - B1_Mm SINE Alu -4 143 2 1 1131 446 226 136 146 chr11 71568069 71568122 -50275734 - B4A SINE B4 -73 219 167 1 1131 360 0 0 0 chr11 71568122 71568162 -50275694 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1131 446 226 136 146 chr11 71568162 71568303 -50275553 - B4A SINE B4 -126 166 2 1 1131 212 344 48 0 chr11 71568630 71568755 -50275101 - L2c LINE L2 -213 3174 3044 1 1131 504 0 0 0 chr11 71570365 71570421 -50273435 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1131 351 113 0 0 chr11 71571071 71571124 -50272732 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1 1131 261 0 0 0 chr11 71571155 71571184 -50272672 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1131 311 321 67 80 chr11 71571200 71571524 -50272332 - L2c LINE L2 -34 3353 3032 1 1131 245 360 32 64 chr11 71571615 71571802 -50272054 - L2c LINE L2 -508 2911 2731 1 1131 238 317 156 18 chr11 71572565 71572732 -50271124 + MIR SINE MIR 9 198 -64 1 1131 482 288 10 39 chr11 71572798 71572970 -50270886 - MIRb SINE MIR -56 212 41 1 1131 1093 175 10 5 chr11 71574154 71574355 -50269501 - URR1A DNA MER1_type -3 223 22 1 1131 345 266 56 8 chr11 71574586 71574711 -50269145 - LTR16C LTR ERVL -6 483 353 1 1131 198 103 0 0 chr11 71575432 71575461 -50268395 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 1 1131 235 347 13 0 chr11 71575464 71575539 -50268317 - ID4 SINE ID -6 77 2 1 1131 210 253 143 12 chr11 71575907 71575991 -50267865 + MIRb SINE MIR 47 141 -127 1 1131 266 356 24 53 chr11 71577548 71577717 -50266139 - MIRb SINE MIR 0 268 105 1 1131 366 299 44 53 chr11 71577806 71577977 -50265879 - MIRb SINE MIR -61 207 38 1 1131 278 145 174 0 chr11 71579840 71579909 -50263947 + L1MA5 LINE L1 6195 6275 -25 1 1131 216 216 0 0 chr11 71580872 71580923 -50262933 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1131 1386 113 22 39 chr11 71581739 71581969 -50261887 - URR1A DNA MER1_type 0 226 1 1 1131 458 278 157 0 chr11 71587302 71587500 -50256356 - L1MC4a LINE L1 -2012 5870 5642 1 1131 186 71 0 0 chr11 71587500 71587528 -50256328 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1131 229 333 53 18 chr11 71589111 71589224 -50254632 - MER20 DNA MER1_type -72 147 31 1 1131 198 91 0 0 chr11 71589776 71589809 -50254047 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1131 234 328 0 0 chr11 71590107 71590174 -50253682 - RMER15 LTR ERVL -105 470 404 1 1131 784 212 16 27 chr11 71590229 71590413 -50253443 - B3A SINE B2 -14 184 3 1 1131 252 336 64 18 chr11 71590988 71591097 -50252759 + PB1D10 SINE Alu 2 115 -2 1 1131 233 297 16 0 chr11 71591104 71591168 -50252688 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 1 1131 761 9 9 0 chr11 71591371 71591478 -50252378 - L1Md_T LINE L1 -1 6581 6474 1 1131 333 148 12 24 chr11 71591637 71591720 -50252136 + CT-rich Low_complexity Low_complexity 2 83 0 1 1131 1119 235 25 39 chr11 71591800 71592079 -50251777 - B4 SINE B4 -7 285 11 1 1131 234 0 0 0 chr11 71593248 71593274 -50250582 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1131 481 338 57 24 chr11 71593862 71594074 -50249782 - L2a LINE L2 0 3426 3208 1 1131 459 368 64 15 chr11 71594077 71594451 -50249405 + L1ME2z LINE L1 5667 6057 -107 1 1131 270 276 170 12 chr11 71594535 71594700 -50249156 - L2a LINE L2 -234 3192 3002 1 1131 425 341 92 39 chr11 71594700 71594984 -50248872 - MLT1B LTR MaLR -1 389 91 1 1131 207 0 0 0 chr11 71595785 71595808 -50248048 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1131 215 294 134 0 chr11 71595970 71596077 -50247779 - MIRc SINE MIR -139 129 3 1 1131 2309 209 16 34 chr11 71598000 71598643 -50245213 - RLTR31_Mur LTR ERVK -32 521 1 1 1131 1217 249 29 29 chr11 71599798 71600108 -50243748 - MTE2b LTR MaLR -12 367 58 1 1131 264 175 35 0 chr11 71600638 71600695 -50243161 + MIRc SINE MIR 84 142 -126 1 1131 768 211 199 6 chr11 71600729 71600905 -50242951 - B3 SINE B2 -6 210 1 1 1131 273 109 0 0 chr11 71602843 71602889 -50240967 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1131 245 356 11 0 chr11 71603602 71603689 -50240167 + ID_B1 SINE B4 114 201 -23 1 1131 1832 345 34 22 chr11 71604770 71605569 -50238287 - Lx8 LINE L1 -116 7357 6550 1 1131 1282 245 146 14 chr11 71605586 71605950 -50237906 - MTD LTR MaLR 0 419 8 1 1131 647 265 37 32 chr11 71605961 71606179 -50237677 - Lx8 LINE L1 -948 6525 6307 1 1131 1387 227 13 3 chr11 71606191 71606496 -50237360 + MTD LTR MaLR 10 317 -102 1 1131 501 257 0 0 chr11 71606546 71606659 -50237197 - Lx8 LINE L1 -1164 6309 6197 1 1131 299 290 81 52 chr11 71606663 71606874 -50236982 + L1_Rod LINE L1 929 1145 -6463 1 1131 448 333 49 22 chr11 71606921 71607188 -50236668 + L1_Rod LINE L1 1221 1494 -4353 1 1131 2054 180 12 20 chr11 71608686 71609094 -50234762 + MTB_Mm LTR MaLR 3 407 0 1 1131 262 275 24 59 chr11 71609482 71609567 -50234289 - MIR SINE MIR -65 197 116 1 1131 1556 249 27 0 chr11 71609751 71610120 -50233736 + MTEa LTR MaLR 1 379 0 1 1131 185 333 0 0 chr11 71610831 71610879 -50232977 - MIR3 SINE MIR -52 156 109 1 1131 2191 128 6 3 chr11 71611040 71611377 -50232479 - ORR1A1 LTR MaLR -8 338 1 1 1131 479 269 52 9 chr11 71611377 71611492 -50232364 + RSINE1 SINE B4 31 150 -15 1 1131 198 0 0 0 chr11 71611497 71611519 -50232337 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1131 661 19 19 28 chr11 71611884 71611990 -50231866 + (TA)n Simple_repeat Simple_repeat 1 105 0 1 1131 217 285 129 74 chr11 71612071 71612234 -50231622 + MIR3 SINE MIR 28 199 -9 1 1131 232 318 60 62 chr11 71612461 71612629 -50231227 + L2b LINE L2 3226 3370 -5 1 1131 353 247 0 27 chr11 71613139 71613214 -50230642 + ID SINE ID 1 73 -151 1 1131 210 71 0 0 chr11 71613576 71613604 -50230252 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1131 341 286 139 70 chr11 71613635 71613894 -50229962 - B4 SINE B4 -15 277 1 1 1131 952 226 105 9 chr11 71615012 71615240 -50228616 - MTD LTR MaLR 0 419 170 1 1131 631 204 41 27 chr11 71615496 71615642 -50228214 - MTD LTR MaLR -271 148 1 1 1131 207 0 0 0 chr11 71616325 71616348 -50227508 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1 1131 477 242 16 62 chr11 71616348 71616476 -50227380 - B1F SINE Alu -14 135 14 1 1131 211 339 163 41 chr11 71618104 71618276 -50225580 - MIRb SINE MIR -2 266 74 1 1131 385 321 185 29 chr11 71618777 71619060 -50224796 + L2b LINE L2 3028 3354 -33 1 1131 293 309 19 19 chr11 71620037 71620192 -50223664 + (CATATA)n Simple_repeat Simple_repeat 6 160 0 1 1131 259 348 74 63 chr11 71621571 71621856 -50222000 - L2c LINE L2 0 3387 3100 1 1131 1142 72 0 0 chr11 71622832 71622970 -50220886 + B1_Mus1 SINE Alu 1 138 -10 2 1131 277 24 23 23 chr11 71622970 71623013 -50220843 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1131 896 269 99 11 chr11 71623176 71623439 -50220417 - B4A SINE B4 -6 286 1 2 1131 270 314 28 69 chr11 71624301 71624445 -50219411 + MIR SINE MIR 65 202 -60 2 1131 273 326 100 66 chr11 71624503 71624762 -50219094 + MLT1J LTR MaLR 90 357 -155 2 1131 348 83 0 0 chr11 71624913 71624961 -50218895 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1131 230 347 0 0 chr11 71626284 71626359 -50217497 + (CAT)n Simple_repeat Simple_repeat 2 76 0 2 1131 431 48 16 0 chr11 71626843 71626905 -50216951 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1131 1912 183 16 21 chr11 71626969 71627343 -50216513 + ORR1D1 LTR MaLR 3 374 0 2 1131 184 267 22 0 chr11 71628683 71628728 -50215128 - L4 LINE RTE -965 1064 1019 2 1131 387 301 93 71 chr11 71629567 71629889 -50213967 - LTR85a LTR Gypsy? -153 549 221 2 1131 1105 174 47 14 chr11 71629991 71630206 -50213650 - URR1A DNA MER1_type 0 226 5 2 1131 352 311 60 43 chr11 71630294 71630479 -50213377 + L1ME4a LINE L1 5934 6121 -3 2 1131 215 274 56 64 chr11 71631347 71631472 -50212384 - MIRb SINE MIR -14 254 131 2 1131 198 118 0 0 chr11 71632917 71632951 -50210905 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1131 348 24 0 0 chr11 71632952 71632993 -50210863 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1131 1382 270 56 82 chr11 71633146 71633683 -50210173 - MER119 DNA MER1_type 0 583 61 2 1131 233 296 175 57 chr11 71633757 71633986 -50209870 + LTR16C LTR ERVL 232 487 -2 2 1131 831 210 42 61 chr11 71634658 71634871 -50208985 + MTE2b LTR MaLR 171 379 0 2 1131 462 65 0 0 chr11 71635333 71635395 -50208461 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1131 603 98 0 0 chr11 71635395 71635487 -50208369 + (GA)n Simple_repeat Simple_repeat 2 93 0 2 1131 1395 232 3 3 chr11 71636189 71636475 -50207381 + Lx9 LINE L1 6760 7045 -599 2 1131 189 0 0 0 chr11 71636537 71636558 -50207298 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1131 21 57 0 0 chr11 71636558 71636593 -50207263 + AT_rich Low_complexity Low_complexity 1 35 0 2 1131 7948 194 39 10 chr11 71636593 71638542 -50205314 - Lx7 LINE L1 -346 7350 5347 2 1131 645 14 0 0 chr11 71638910 71638984 -50204872 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 1131 267 255 21 11 chr11 71640134 71640229 -50203627 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 1131 261 75 0 0 chr11 71640261 71640301 -50203555 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 2 1131 837 49 0 0 chr11 71640301 71640403 -50203453 - B1_Mm SINE Alu -39 108 7 2 1131 498 163 28 84 chr11 71640307 71640414 -50203442 - MT2B LTR ERVL -344 257 157 2 1131 185 362 120 23 chr11 71641899 71642032 -50201824 - L3 LINE CR1 -88 4401 4256 2 1131 283 342 155 42 chr11 71642860 71643028 -50200828 + MLT1F LTR MaLR 10 196 -352 2 1131 381 252 117 0 chr11 71643036 71643139 -50200717 + ORR1D1 LTR MaLR 3 117 -262 2 1131 481 317 35 14 chr11 71643218 71643362 -50200494 + B4A SINE B4 123 269 -23 2 1131 293 289 11 0 chr11 71643453 71643543 -50200313 + GA-rich Low_complexity Low_complexity 3 93 0 2 1131 911 263 0 0 chr11 71643550 71643729 -50200127 - ORR1E LTR MaLR -168 191 13 2 1131 751 241 32 0 chr11 71643737 71643924 -50199932 - RMER15 LTR ERVL -11 564 372 2 1131 554 216 23 111 chr11 71643986 71644158 -50199698 - RMER15 LTR ERVL -414 161 5 2 1131 450 0 0 0 chr11 71644566 71644616 -50199240 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1131 281 293 104 28 chr11 71644616 71644760 -50199096 + MER121 Unknown Unknown 146 300 -112 2 1131 2029 234 65 37 chr11 71645974 71646511 -50197345 - RMER15 LTR ERVL -2 573 22 2 1131 275 264 0 40 chr11 71646577 71646652 -50197204 - RMER15 LTR ERVL -503 72 1 2 1131 1986 163 267 30 chr11 71647123 71647617 -50196239 + RMER19C LTR ERVK 1 611 0 2 1131 293 310 10 20 chr11 71647665 71647767 -50196089 + RLTR18B LTR ERVK 1 101 -411 2 1131 1419 174 58 18 chr11 71647754 71648029 -50195827 + ORR1D1 LTR MaLR 89 374 0 2 1131 240 310 44 44 chr11 71648066 71648157 -50195699 + MLT1F2 LTR MaLR 63 153 -407 2 1131 231 319 97 46 chr11 71648845 71649082 -50194774 + MLT1A0 LTR MaLR 1 249 -116 2 1131 261 288 0 0 chr11 71649106 71649165 -50194691 + tRNA-Ala-GCY_ tRNA tRNA 9 67 -8 2 1131 268 211 86 32 chr11 71649623 71649716 -50194140 + MIR3 SINE MIR 111 208 0 2 1131 8263 69 7 3 chr11 71649717 71650782 -50193074 + L1Md_F2 LINE L1 4518 5586 -297 2 1131 7672 73 2 11 chr11 71650782 71651786 -50192070 + L1Md_F2 LINE L1 5587 6581 -1 2 1131 1170 243 29 95 chr11 71652680 71653026 -50190830 - MTE2a LTR MaLR 0 379 57 2 1131 550 162 40 0 chr11 71653050 71653149 -50190707 + ORR1C2 LTR MaLR 1 103 -271 2 1131 721 189 31 0 chr11 71653149 71653276 -50190580 + ORR1C2 LTR MaLR 254 384 0 2 1131 275 327 75 0 chr11 71653276 71653340 -50190516 - MTE2a LTR MaLR -307 72 1 2 1131 200 360 64 47 chr11 71653936 71654108 -50189748 - MIR3 SINE MIR -24 184 10 2 1131 255 298 40 32 chr11 71654790 71654915 -50188941 + MIRb SINE MIR 63 188 -80 2 1131 231 296 67 34 chr11 71655098 71655217 -50188639 + MLT1H LTR MaLR 72 194 -355 2 1131 1988 203 103 103 chr11 71655705 71656316 -50187540 - RMER19C LTR ERVK 0 611 1 2 1131 225 108 0 0 chr11 71657474 71657511 -50186345 + (ATG)n Simple_repeat Simple_repeat 1 37 0 2 1131 984 299 49 11 chr11 71657526 71657810 -50186046 - RMER15 LTR ERVL -6 569 275 2 1131 301 296 28 34 chr11 71658012 71658190 -50185666 + (ATGGTG)n Simple_repeat Simple_repeat 3 179 0 2 1131 268 228 18 0 chr11 71658407 71658464 -50185392 + ZP3AR Satellite Satellite 25 82 -130 2 1131 725 65 0 0 chr11 71658424 71658516 -50185340 + BC1_Mm scRNA scRNA 1 92 -60 2 1131 236 325 86 39 chr11 71658516 71658552 -50185304 + RSINE1 SINE B4 2 135 -30 2 1131 186 371 19 9 chr11 71659457 71659563 -50184293 + L2b LINE L2 3050 3156 -219 2 1131 302 228 29 38 chr11 71660546 71660651 -50183205 - Lx9 LINE L1 -7 7637 7534 2 1131 329 0 24 0 chr11 71660664 71660705 -50183151 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1131 1686 200 77 23 chr11 71660789 71661142 -50182714 - RMER1B Other Other -651 415 44 2 1131 226 0 0 56 chr11 71661988 71662024 -50181832 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1131 254 316 88 53 chr11 71662311 71662708 -50181148 - L1M5 LINE L1 -2946 3200 2790 2 1131 303 96 0 0 chr11 71662714 71662766 -50181090 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 2 1131 1928 212 16 49 chr11 71663001 71663427 -50180429 + MTD LTR MaLR 8 419 0 2 1131 611 279 43 69 chr11 71663429 71663660 -50180196 + MTD-int LTR MaLR 3 227 -1031 2 1131 3307 190 50 30 chr11 71663667 71664388 -50179468 - RMER1C Other Other 0 1342 608 2 1131 350 292 62 0 chr11 71664531 71664644 -50179212 - RMER1B Other Other -906 160 41 2 1131 1737 224 22 11 chr11 71664680 71665045 -50178811 + MTD-int LTR MaLR 304 672 -586 2 1131 1184 227 31 28 chr11 71665043 71665329 -50178527 - MTC-int LTR MaLR -296 962 676 2 1131 1487 260 91 84 chr11 71666354 71667065 -50176791 - L1MA4A LINE L1 -139 6017 5313 2 1131 364 371 48 14 chr11 71667083 71667291 -50176565 - MLT1J LTR MaLR -295 217 3 2 1131 243 258 316 30 chr11 71668160 71668222 -50175634 - RMER15 LTR ERVL -1 574 488 2 1131 324 0 0 0 chr11 71668222 71668258 -50175598 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1131 423 0 0 0 chr11 71668258 71668304 -50175552 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1131 278 245 100 100 chr11 71668304 71668450 -50175406 - RMER15 LTR ERVL -88 487 280 2 1131 911 217 15 41 chr11 71669192 71669389 -50174467 - B3A SINE B2 -5 193 2 2 1131 601 269 128 61 chr11 71669413 71669612 -50174244 - Lx9 LINE L1 -4 7640 7448 2 1131 471 35 0 0 chr11 71669612 71669669 -50174187 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 2 1131 779 170 7 7 chr11 71669669 71669805 -50174051 - B1_Mur2 SINE Alu -13 136 1 2 1131 601 269 128 61 chr11 71669805 71669948 -50173908 - Lx9 LINE L1 -197 7447 7275 2 1131 423 0 0 0 chr11 71670534 71670581 -50173275 + (GGA)n Simple_repeat Simple_repeat 1 47 0 2 1131 274 313 108 45 chr11 71670789 71670946 -50172910 - MIRc SINE MIR -45 223 57 2 1131 688 252 93 88 chr11 71672238 71672464 -50171392 + B4 SINE B4 1 227 -65 2 1131 468 0 0 0 chr11 71672486 71672538 -50171318 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1131 212 231 0 0 chr11 71672538 71672577 -50171279 + G-rich Low_complexity Low_complexity 6 44 0 2 1131 3948 34 36 0 chr11 71674952 71675419 -50168437 - L1Md_T LINE L1 0 6582 6099 2 1131 678 293 49 101 chr11 71676682 71677047 -50166809 - MTEb LTR MaLR -13 366 21 2 1131 189 0 0 0 chr11 71677090 71677111 -50166745 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1131 236 261 11 0 chr11 71677113 71677205 -50166651 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 1131 664 325 79 0 chr11 71677228 71677431 -50166425 - MTEa LTR MaLR -160 219 1 2 1131 292 343 29 43 chr11 71678643 71678783 -50165073 - MLT1J LTR MaLR -304 208 71 2 1131 1291 165 14 23 chr11 71679486 71679703 -50164153 - B3 SINE B2 0 216 2 2 1131 234 0 0 0 chr11 71679808 71679834 -50164022 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1131 267 147 96 68 chr11 71679900 71679973 -50163883 + Lx5 LINE L1 6976 7050 0 2 1131 243 0 0 0 chr11 71680811 71680838 -50163018 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1131 249 225 30 119 chr11 71681411 71681512 -50162344 + L1MD1 LINE L1 6149 6240 -2 2 1131 386 258 116 37 chr11 71681599 71681788 -50162068 + L1MB7 LINE L1 5735 5938 -246 2 1131 1042 285 90 42 chr11 71681890 71682344 -50161512 - L1MA5 LINE L1 -36 6264 5789 2 1131 455 123 12 0 chr11 71682528 71682609 -50161247 + (TGGA)n Simple_repeat Simple_repeat 2 83 0 2 1131 250 351 53 8 chr11 71684252 71684384 -50159472 + MIR SINE MIR 60 197 -65 3 1131 269 167 0 0 chr11 71685885 71685927 -50157929 + C-rich Low_complexity Low_complexity 3 44 0 3 1131 306 140 0 39 chr11 71686744 71686796 -50157060 - HAL1-3A_ME LINE L1 -833 2025 1976 3 1131 612 83 45 16 chr11 71686806 71687053 -50156803 + (TG)n Simple_repeat Simple_repeat 1 254 0 3 1131 301 291 82 0 chr11 71687604 71687762 -50156094 - L1M5 LINE L1 -1680 4466 4296 3 1131 226 233 135 14 chr11 71688099 71688173 -50155683 + ID4 SINE ID 1 83 0 3 1131 731 262 20 80 chr11 71688211 71688410 -50155446 - B3A SINE B2 0 198 12 3 1131 4503 8 4 0 chr11 71688739 71689230 -50154626 + MT2_Mm LTR ERVL 1 493 0 3 1131 41468 16 14 0 chr11 71689230 71694517 -50149339 + MERVL-int LTR ERVL 1 5360 -125 3 1131 392 179 46 35 chr11 71694517 71694604 -50149252 + ORR1A3-int LTR MaLR 553 640 -1323 3 1131 319 0 0 0 chr11 71694604 71694642 -50149214 + MERVL-int LTR ERVL 5448 5485 0 3 1131 4503 8 4 0 chr11 71694642 71695133 -50148723 + MT2_Mm LTR ERVL 1 493 0 3 1131 1162 71 0 0 chr11 71695782 71695922 -50147934 + B1_Mus2 SINE Alu 2 141 -6 3 1131 443 63 0 16 chr11 71695922 71695986 -50147870 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 3 1131 252 86 0 0 chr11 71696078 71696113 -50147743 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 1132 266 178 163 46 chr11 71696971 71697124 -50146732 + L1M3e LINE L1 444 614 -6416 3 1132 1161 88 0 0 chr11 71697959 71698106 -50145750 + B1_Mus2 SINE Alu 1 147 0 3 1132 562 312 160 32 chr11 71698919 71699320 -50144536 + Lx8 LINE L1 6972 7423 -50 3 1132 180 0 0 0 chr11 71699351 71699371 -50144485 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1132 1918 220 28 15 chr11 71699389 71699781 -50144075 + MTD LTR MaLR 8 404 -15 3 1132 22 35 0 0 chr11 71699817 71699846 -50144010 + AT_rich Low_complexity Low_complexity 1 29 0 3 1132 343 308 63 116 chr11 71700244 71700512 -50143344 - MIR SINE MIR 0 262 9 3 1132 410 0 20 0 chr11 71700584 71700634 -50143222 + (CAGA)n Simple_repeat Simple_repeat 1 51 0 3 1132 2384 85 29 0 chr11 71701335 71701651 -50142205 + ORR1A2 LTR MaLR 1 325 -2 3 1132 529 262 52 11 chr11 71701756 71701893 -50141963 + B3A SINE B2 27 168 -30 3 1132 1354 176 26 4 chr11 71702162 71702390 -50141466 - MTD LTR MaLR 0 419 187 3 1132 411 21 0 0 chr11 71702390 71702438 -50141418 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1132 4667 170 133 4 chr11 71702465 71703370 -50140486 - RMER1B Other Other -1 1065 45 3 1132 1122 144 58 16 chr11 71703421 71703611 -50140245 - MTD LTR MaLR -208 211 14 3 1132 660 279 62 123 chr11 71703641 71703820 -50140036 - MLT1B LTR MaLR -8 382 225 3 1132 1069 225 14 0 chr11 71703820 71704033 -50139823 - B3 SINE B2 0 216 1 3 1132 660 279 62 123 chr11 71704033 71704242 -50139614 - MLT1B LTR MaLR -166 224 18 3 1132 204 364 0 0 chr11 71704571 71704648 -50139208 - L2c LINE L2 -64 3323 3247 3 1132 255 221 149 10 chr11 71705216 71705345 -50138511 + MIRb SINE MIR 13 156 -112 3 1132 378 0 0 0 chr11 71705808 71705850 -50138006 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1132 549 96 0 0 chr11 71705852 71705946 -50137910 + (GA)n Simple_repeat Simple_repeat 2 95 0 3 1132 492 18 0 0 chr11 71705989 71706046 -50137810 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1132 295 277 38 57 chr11 71706184 71706341 -50137515 - MIRc SINE MIR -44 164 11 3 1132 497 255 27 33 chr11 71708116 71708266 -50135590 - B1F2 SINE Alu 0 149 1 3 1132 455 282 82 56 chr11 71708740 71708798 -50135058 - ORR1E LTR MaLR 0 359 305 3 1132 2130 176 5 8 chr11 71708798 71709177 -50134679 - ORR1C1 LTR MaLR 0 378 1 3 1132 455 282 82 56 chr11 71709177 71709351 -50134505 - ORR1E LTR MaLR -55 304 121 3 1132 290 185 0 27 chr11 71709382 71709493 -50134363 + T-rich Low_complexity Low_complexity 1 108 0 3 1132 742 183 99 0 chr11 71709494 71709625 -50134231 - B1_Mur1 SINE Alu -1 148 5 3 1132 1033 206 0 5 chr11 71709942 71710137 -50133719 + ORR1C2 LTR MaLR 1 194 -190 3 1132 275 105 0 0 chr11 71710137 71710175 -50133681 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 3 1132 720 178 0 0 chr11 71710182 71710362 -50133494 + CT-rich Low_complexity Low_complexity 1 180 0 3 1132 808 215 62 16 chr11 71710362 71710556 -50133300 + ORR1C2 LTR MaLR 174 376 -8 3 1132 183 339 0 0 chr11 71711420 71711476 -50132380 + MIR SINE MIR 97 152 -110 3 1132 1996 99 89 0 chr11 71711908 71712210 -50131646 - ORR1A4 LTR MaLR 0 329 1 3 1132 1926 154 26 34 chr11 71712629 71712978 -50130878 + ORR1B1 LTR MaLR 41 386 -8 3 1132 297 294 11 21 chr11 71713061 71713155 -50130701 - MIR SINE MIR -58 150 58 3 1132 259 311 125 29 chr11 71714763 71714899 -50128957 + MIRc SINE MIR 61 209 -59 3 1132 3095 63 13 5 chr11 71715319 71715716 -50128140 + MTB LTR MaLR 1 400 0 3 1132 617 69 11 0 chr11 71716557 71716644 -50127212 + (GA)n Simple_repeat Simple_repeat 2 89 0 3 1132 329 271 24 0 chr11 71717348 71717433 -50126423 + MLT1C LTR MaLR 8 94 -373 3 1132 719 269 36 36 chr11 71717489 71717709 -50126147 + MLT1C LTR MaLR 245 464 -3 3 1132 720 340 79 15 chr11 71717727 71718254 -50125602 + L1MC4 LINE L1 6507 7103 -939 3 1132 900 289 92 39 chr11 71718248 71718715 -50125141 + L1MC4 LINE L1 7250 7741 -301 3 1132 180 234 0 0 chr11 71718795 71718842 -50125014 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1132 986 246 68 25 chr11 71718876 71719155 -50124701 - B4A SINE B4 0 292 2 3 1132 512 248 80 0 chr11 71719158 71719283 -50124573 - ID_B1 SINE B4 -1 223 89 3 1132 396 0 0 0 chr11 71719381 71719425 -50124431 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1132 1189 299 52 42 chr11 71719769 71720251 -50123605 - MLT1D LTR MaLR -7 498 12 3 1132 525 32 0 0 chr11 71720875 71720938 -50122918 + (CTA)n Simple_repeat Simple_repeat 1 63 0 3 1132 309 100 0 0 chr11 71722616 71722666 -50121190 + (TCC)n Simple_repeat Simple_repeat 2 51 0 3 1132 202 273 0 0 chr11 71722666 71722710 -50121146 + (CCA)n Simple_repeat Simple_repeat 3 46 0 3 1132 220 220 0 132 chr11 71722716 71722784 -50121072 + L2c LINE L2 3097 3155 -232 3 1132 240 260 84 124 chr11 71723648 71723850 -50120006 - L2c LINE L2 -6 3381 3188 3 1132 840 269 49 82 chr11 71724949 71725290 -50118566 + ORR1E LTR MaLR 1 355 -4 3 1132 1651 244 125 40 chr11 71725335 71725864 -50117992 + RMER15 LTR ERVL 2 575 0 3 1132 190 300 50 0 chr11 71726917 71726977 -50116879 - MIRb SINE MIR -67 201 139 3 1132 300 27 0 0 chr11 71727647 71727684 -50116172 + (CAA)n Simple_repeat Simple_repeat 2 38 0 3 1132 303 276 30 10 chr11 71727828 71727927 -50115929 + CT-rich Low_complexity Low_complexity 1 101 0 3 1132 838 268 35 17 chr11 71727929 71728161 -50115695 - MLT1D LTR MaLR -263 242 7 3 1132 573 15 0 0 chr11 71729156 71729222 -50114634 + (GTTTG)n Simple_repeat Simple_repeat 2 67 0 3 1132 222 37 0 0 chr11 71730409 71730436 -50113420 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1132 262 336 13 93 chr11 71732042 71732193 -50111663 + L2c LINE L2 3249 3387 0 3 1132 702 234 63 0 chr11 71733103 71733261 -50110595 + ID_B1 SINE B4 32 199 -25 3 1132 201 74 0 0 chr11 71733265 71733292 -50110564 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1132 255 254 84 0 chr11 71733383 71733440 -50110416 + B4A SINE B4 213 275 -17 3 1132 189 0 0 0 chr11 71733440 71733461 -50110395 + (TGGA)n Simple_repeat Simple_repeat 4 24 0 3 1132 255 254 84 0 chr11 71733461 71733474 -50110382 + B4A SINE B4 276 288 -4 3 1132 183 80 0 0 chr11 71733784 71733809 -50110047 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1132 856 129 38 0 chr11 71733816 71733948 -50109908 - B1_Mus1 SINE Alu -7 141 5 3 1132 389 265 10 48 chr11 71734046 71734149 -50109707 - RSINE1 SINE B4 -63 102 4 3 1132 333 0 0 0 chr11 71734394 71734431 -50109425 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1132 271 200 42 28 chr11 71734437 71734509 -50109347 - RMER15 LTR ERVL -71 504 432 3 1132 248 319 49 47 chr11 71735404 71735525 -50108331 + MIR SINE MIR 17 150 -118 3 1132 793 188 176 5 chr11 71735578 71735765 -50108091 + ID_B1 SINE B4 2 220 -4 3 1132 271 259 138 59 chr11 71735862 71736014 -50107842 + MIR SINE MIR 21 184 -78 3 1132 1097 224 96 22 chr11 71736414 71736684 -50107172 + MTD LTR MaLR 1 290 -129 3 1132 495 0 0 0 chr11 71737048 71737103 -50106753 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1132 261 250 15 30 chr11 71737116 71737182 -50106674 - MER5A1 DNA MER1_type -39 127 63 3 1132 441 0 0 0 chr11 71737968 71738017 -50105839 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1132 230 330 39 39 chr11 71738061 71738165 -50105691 + MER45R DNA Tip100 10 113 -1468 3 1132 812 286 61 5 chr11 71738756 71739113 -50104743 - L1MB1 LINE L1 -480 5832 5444 3 1132 536 328 30 31 chr11 71739104 71739392 -50104464 + L1MB1 LINE L1 5838 6127 -62 3 1132 1226 207 81 89 chr11 71739392 71739774 -50104082 - MTE2a LTR MaLR 0 379 1 3 1132 536 332 31 34 chr11 71739774 71739827 -50104029 + L1MB1 LINE L1 6128 6177 -12 3 1132 479 223 138 0 chr11 71740107 71740237 -50103619 + L1M4 LINE L1 4959 5106 -1040 3 1132 204 40 0 0 chr11 71740391 71740416 -50103440 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1132 784 267 40 54 chr11 71740416 71740883 -50102973 + L1M4 LINE L1 5141 5606 -574 3 1132 420 322 146 16 chr11 71740883 71741129 -50102727 + B4 SINE B4 1 278 -14 3 1132 3076 15 0 0 chr11 71741473 71741810 -50102046 + IAPLTR1a_Mm LTR ERVK 1 337 0 3 1132 693 73 0 0 chr11 71742200 71742296 -50101560 + (CA)n Simple_repeat Simple_repeat 1 96 0 3 1132 265 307 91 38 chr11 71742543 71742675 -50101181 + MIRc SINE MIR 23 161 -107 3 1132 26 50 0 0 chr11 71742689 71742729 -50101127 + AT_rich Low_complexity Low_complexity 1 40 0 3 1132 414 0 0 0 chr11 71742983 71743029 -50100827 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1132 383 185 0 11 chr11 71743029 71743122 -50100734 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 1132 369 0 0 0 chr11 71743122 71743163 -50100693 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1132 280 221 59 0 chr11 71743274 71743342 -50100514 - MIRc SINE MIR -130 138 67 3 1132 243 316 209 0 chr11 71743342 71743481 -50100375 + LTR16A LTR ERVL 284 451 0 3 1132 183 326 11 23 chr11 71743663 71743751 -50100105 + MIRc SINE MIR 154 240 -28 3 1132 300 338 148 39 chr11 71744261 71744525 -50099331 - MLT1D LTR MaLR -118 387 93 4 1132 1382 203 66 5 chr11 71744525 71744872 -50098984 + MTD LTR MaLR 2 411 -8 4 1132 228 172 69 0 chr11 71745136 71745194 -50098662 + Tigger16a DNA Tigger 793 854 -79 4 1132 251 422 9 0 chr11 71745219 71745328 -50098528 + MER81 DNA AcHobo 4 113 -1 4 1132 1324 147 4 85 chr11 71745348 71745594 -50098262 + URR1A DNA MER1_type 1 226 0 4 1132 574 239 27 27 chr11 71745680 71745826 -50098030 + MTD LTR MaLR 66 211 -208 4 1132 916 251 0 0 chr11 71745826 71746009 -50097847 + B3A SINE B2 1 183 -15 4 1132 207 0 0 0 chr11 71746011 71746034 -50097822 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1132 225 0 0 0 chr11 71746033 71746058 -50097798 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1132 302 213 0 0 chr11 71746094 71746141 -50097715 + HAL1-3A_ME LINE L1 1976 2022 -836 4 1132 715 190 183 6 chr11 71746205 71746385 -50097471 + MTD LTR MaLR 208 419 0 4 1132 394 285 24 40 chr11 71746809 71747005 -50096851 + L1M5 LINE L1 5500 5695 -467 4 1132 544 292 61 47 chr11 71747275 71747487 -50096369 - MTEb LTR MaLR -163 216 2 4 1132 703 250 67 5 chr11 71748844 71749037 -50094819 + MLT1A1 LTR MaLR 192 396 -12 4 1132 377 162 146 24 chr11 71749211 71749293 -50094563 - ORR1E LTR MaLR -16 363 272 4 1132 1864 198 82 6 chr11 71749309 71749674 -50094182 - MTD LTR MaLR -14 405 13 4 1132 632 291 58 11 chr11 71749703 71749894 -50093962 - ORR1E LTR MaLR -111 248 49 4 1132 294 194 0 0 chr11 71751505 71751567 -50092289 + GA-rich Low_complexity Low_complexity 4 65 0 4 1132 952 277 52 77 chr11 71751568 71751932 -50091924 - MLT2D LTR ERVL -52 362 8 4 1132 188 350 134 28 chr11 71754289 71754536 -50089320 - L3 LINE CR1 -9 4480 4208 4 1132 2547 121 34 3 chr11 71754783 71755165 -50088691 + ORR1B1 LTR MaLR 1 394 0 4 1132 913 128 0 32 chr11 71755726 71755912 -50087944 + CT-rich Low_complexity Low_complexity 1 180 0 4 1132 189 107 0 0 chr11 71755913 71755941 -50087915 + (TCC)n Simple_repeat Simple_repeat 2 29 0 4 1132 707 292 112 35 chr11 71756583 71756977 -50086879 + L1MB5 LINE L1 5749 6172 -2 4 1132 554 39 13 0 chr11 71757557 71757634 -50086222 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1132 189 132 0 0 chr11 71757634 71757672 -50086184 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1132 299 305 9 19 chr11 71757683 71757790 -50086066 - MER112 DNA MER1_type -106 155 50 4 1132 337 344 57 6 chr11 71758659 71758817 -50085039 - MIRb SINE MIR -12 256 91 4 1132 302 202 115 35 chr11 71758878 71758965 -50084891 - L2c LINE L2 0 3387 3294 4 1132 871 261 37 0 chr11 71758968 71759183 -50084673 - ID_B1 SINE B4 -1 223 1 4 1132 231 214 35 18 chr11 71759139 71759196 -50084660 - ZP3AR Satellite Satellite -127 85 28 4 1132 348 284 105 66 chr11 71759637 71759818 -50084038 - MTEb LTR MaLR 0 419 232 4 1132 799 276 163 15 chr11 71761598 71762065 -50081791 - MLT1F LTR MaLR -12 536 8 4 1132 687 211 33 167 chr11 71762282 71762641 -50081215 + Lx9 LINE L1 7328 7638 -6 4 1132 318 417 0 0 chr11 71763225 71763340 -50080516 + Cheshire DNA MER1_type 166 280 -2140 4 1132 354 289 124 98 chr11 71763844 71764109 -50079747 + ORR1E LTR MaLR 88 359 0 4 1132 204 200 0 0 chr11 71765050 71765095 -50078761 + (CACG)n Simple_repeat Simple_repeat 1 45 0 4 1132 257 0 30 0 chr11 71765789 71765822 -50078034 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1132 306 73 0 0 chr11 71767135 71767176 -50076680 + (ATG)n Simple_repeat Simple_repeat 3 43 0 4 1132 423 98 0 0 chr11 71767182 71767243 -50076613 + (CAA)n Simple_repeat Simple_repeat 1 61 0 4 1132 274 292 141 8 chr11 71767929 71768050 -50075806 + MIR SINE MIR 16 152 -56 4 1132 579 275 69 0 chr11 71768226 71768357 -50075499 + RSINE1 SINE B4 3 142 -23 4 1132 516 16 0 0 chr11 71768358 71768419 -50075437 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1132 501 17 0 0 chr11 71768419 71768476 -50075380 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1132 744 286 126 11 chr11 71769241 71769510 -50074346 - Tigger7 DNA MER2_type -1907 584 285 4 1132 2988 236 74 34 chr11 71769574 71769624 -50074232 - RCHARR1 DNA MER1_type -8 966 915 4 1132 762 257 50 0 chr11 71769624 71769826 -50074030 - ID_B1 SINE B4 -12 212 1 4 1132 2988 236 74 34 chr11 71769826 71770448 -50073408 - RCHARR1 DNA MER1_type -60 914 261 4 1132 324 0 0 0 chr11 71770448 71770484 -50073372 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1132 2988 236 74 34 chr11 71770484 71770664 -50073192 - RCHARR1 DNA MER1_type -714 260 79 4 1132 747 243 218 41 chr11 71770665 71771046 -50072810 - Lx9 LINE L1 -1693 5951 5480 4 1132 297 245 61 41 chr11 71771070 71771168 -50072688 - RCHARR1 DNA MER1_type -874 100 1 4 1132 448 301 88 44 chr11 71771174 71771379 -50072477 - Tigger7 DNA MER2_type -2277 214 1 4 1132 237 193 125 43 chr11 71772289 71772362 -50071494 + ORR1E LTR MaLR 268 364 -15 4 1132 1889 204 62 15 chr11 71773327 71773729 -50070127 - MTC LTR MaLR 0 421 1 4 1132 505 224 0 0 chr11 71774316 71774414 -50069442 + BC1_Mm scRNA scRNA 2 99 -53 4 1132 234 260 110 0 chr11 71774446 71774519 -50069337 + L1MC5 LINE L1 7821 7901 -60 4 1132 634 294 49 20 chr11 71774616 71774955 -50068901 - L1MA6 LINE L1 -266 6034 5633 4 1132 409 235 6 33 chr11 71774981 71775080 -50068776 + PB1D10 SINE Alu 19 120 0 4 1132 340 311 51 62 chr11 71775552 71775730 -50068126 - MIRc SINE MIR -9 259 84 4 1132 346 265 113 34 chr11 71775754 71775963 -50067893 - MTEa LTR MaLR -8 371 150 4 1132 375 257 29 38 chr11 71776102 71776207 -50067649 + PB1D10 SINE Alu 7 110 -7 4 1132 414 242 20 46 chr11 71776255 71776370 -50067486 + B1_Mus2 SINE Alu 2 110 -10 4 1132 252 111 0 0 chr11 71776469 71776514 -50067342 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1132 682 246 0 21 chr11 71776539 71776684 -50067172 + B1_Mur3 SINE Alu 1 142 -7 4 1132 619 265 101 27 chr11 71777040 71777456 -50066400 + Lx9 LINE L1 5638 6122 -1351 4 1132 551 179 14 14 chr11 71777544 71777686 -50066170 + CT-rich Low_complexity Low_complexity 1 142 0 4 1132 245 232 140 10 chr11 71778330 71778430 -50065426 - HAL1 LINE L1 -837 1670 1558 4 1132 375 145 0 0 chr11 71778547 71778630 -50065226 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1132 315 0 0 0 chr11 71778636 71778671 -50065185 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1132 646 276 105 96 chr11 71779096 71779440 -50064416 + ORR1E LTR MaLR 8 354 -5 4 1132 263 249 143 46 chr11 71780162 71780213 -50063643 + B3A SINE B2 95 152 -46 4 1132 355 83 0 32 chr11 71780213 71780275 -50063581 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1132 263 273 132 33 chr11 71780275 71780331 -50063525 + B3A SINE B2 152 212 -4 4 1132 21 36 0 0 chr11 71781751 71781779 -50062077 + AT_rich Low_complexity Low_complexity 1 28 0 4 1132 346 55 31 52 chr11 71781819 71781915 -50061941 + (TG)n Simple_repeat Simple_repeat 2 95 0 4 1132 394 163 46 11 chr11 71783190 71783277 -50060579 + L2a LINE L2 2830 2919 -500 4 1132 227 265 238 61 chr11 71783300 71783561 -50060295 + L2a LINE L2 3026 3332 -94 4 1132 275 314 40 76 chr11 71783741 71783977 -50059879 - L1ME2z LINE L1 -169 6275 6046 4 1132 3351 32 79 0 chr11 71783977 71784185 -50059671 + RLTR10C LTR ERVK 1 220 -216 4 1132 270 0 0 0 chr11 71784185 71784215 -50059641 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1132 3351 32 79 0 chr11 71784215 71784410 -50059446 + RLTR10C LTR ERVK 221 434 -2 4 1132 275 314 40 76 chr11 71784410 71784449 -50059407 - L1ME2z LINE L1 -399 6045 6010 4 1132 254 347 10 30 chr11 71784449 71784550 -50059306 + L2a LINE L2 3322 3420 -6 4 1132 1323 69 0 0 chr11 71784644 71784819 -50059037 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 4 1132 285 342 27 117 chr11 71784990 71785212 -50058644 + MamRep488 DNA hAT 1 202 -17 4 1132 428 264 6 0 chr11 71785285 71785448 -50058408 + (CA)n Simple_repeat Simple_repeat 2 165 0 4 1132 450 0 0 0 chr11 71786689 71786739 -50057117 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1132 428 286 62 49 chr11 71788688 71788912 -50054944 + L2b LINE L2 3034 3260 -115 4 1132 332 304 52 98 chr11 71789275 71789428 -50054428 - B3A SINE B2 -5 193 48 4 1132 205 178 161 98 chr11 71789757 71789869 -50053987 - MIRc SINE MIR -148 120 2 4 1132 204 40 0 0 chr11 71790268 71790293 -50053563 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1132 1151 326 43 20 chr11 71791551 71791992 -50051864 + MLT1C LTR MaLR 16 466 -1 4 1132 669 201 209 16 chr11 71792120 71792307 -50051549 + MTD LTR MaLR 197 419 0 4 1132 1885 233 8 12 chr11 71792983 71793383 -50050473 + MTD LTR MaLR 8 405 -14 4 1132 525 225 130 0 chr11 71793422 71793591 -50050265 - L1MA6 LINE L1 -5 6295 6105 4 1132 504 0 0 0 chr11 71793611 71793667 -50050189 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1132 1004 306 16 4 chr11 71793680 71793936 -50049920 - B4 SINE B4 -32 260 2 4 1132 1370 272 105 33 chr11 71794183 71794493 -50049363 + RCHARR1 DNA MER1_type 9 350 -624 4 1132 227 31 31 0 chr11 71794493 71794525 -50049331 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1132 1370 274 82 54 chr11 71794525 71794842 -50049014 + RCHARR1 DNA MER1_type 351 964 -10 4 1132 186 167 0 0 chr11 71794846 71794882 -50048974 + (CACCAT)n Simple_repeat Simple_repeat 1 36 0 4 1132 1061 74 0 0 chr11 71794905 71795040 -50048816 + B1_Mus2 SINE Alu 1 135 -12 4 1132 470 17 0 17 chr11 71795040 71795100 -50048756 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 4 1132 250 305 55 59 chr11 71795359 71795561 -50048295 + Tigger9b DNA MER2_type 389 589 -35 4 1132 447 303 41 31 chr11 71795397 71795591 -50048265 + Tigger9a DNA Tigger 535 730 -2 4 1132 359 358 55 42 chr11 71795637 71796019 -50047837 + L1ME4a LINE L1 5622 6008 -116 4 1132 27 62 0 0 chr11 71796088 71796136 -50047720 + AT_rich Low_complexity Low_complexity 1 48 0 4 1132 323 236 183 2 chr11 71796160 71796257 -50047599 + B1F1 SINE Alu 1 116 -1 4 1132 234 128 0 0 chr11 71796264 71796303 -50047553 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 4 1132 249 33 0 0 chr11 71796853 71796883 -50046973 + (GGA)n Simple_repeat Simple_repeat 2 31 0 4 1132 612 0 0 0 chr11 71796883 71796951 -50046905 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1132 845 284 48 22 chr11 71797655 71797885 -50045971 + B4 SINE B4 1 236 -56 5 1132 222 37 0 0 chr11 71797937 71797964 -50045892 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1132 611 259 0 0 chr11 71797979 71798087 -50045769 + RSINE1 SINE B4 30 137 -28 5 1132 350 311 48 0 chr11 71799968 71800087 -50043769 + MIRc SINE MIR 37 160 -108 5 1132 360 0 0 0 chr11 71801156 71801196 -50042660 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1132 593 333 89 30 chr11 71801865 71802326 -50041530 + L1ME3B LINE L1 2617 3104 -3042 5 1132 363 296 22 55 chr11 71802310 71802492 -50041364 + RMER1C Other Other 1163 1338 -4 5 1132 433 313 92 18 chr11 71802487 71802885 -50040971 + L1ME3B LINE L1 4187 4609 -1537 5 1132 592 317 155 33 chr11 71803335 71803762 -50040094 + L1ME3B LINE L1 4837 5315 -831 5 1132 282 256 198 0 chr11 71803777 71803863 -50039993 + Lx9 LINE L1 7315 7417 -227 5 1132 241 250 22 22 chr11 71803880 71803899 -50039957 + Lx9 LINE L1 7505 7523 -121 5 1132 267 114 0 0 chr11 71803899 71803943 -50039913 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1132 241 250 22 22 chr11 71803943 71804013 -50039843 + Lx9 LINE L1 7524 7594 -50 5 1132 24 32 0 0 chr11 71804054 71804085 -50039771 + AT_rich Low_complexity Low_complexity 1 31 0 5 1132 807 269 122 8 chr11 71804129 71804376 -50039480 + B4A SINE B4 5 279 -13 5 1132 497 243 7 0 chr11 71804392 71804536 -50039320 + (CATA)n Simple_repeat Simple_repeat 2 146 0 5 1132 265 259 0 33 chr11 71804634 71804694 -50039162 - ID2 SINE ID -24 59 2 5 1132 319 343 29 10 chr11 71804699 71804802 -50039054 - PB1D9 SINE Alu -10 110 6 5 1132 347 330 9 9 chr11 71804711 71804818 -50039038 - ID_B1 SINE B4 -48 176 70 5 1132 983 248 138 31 chr11 71805166 71805486 -50038370 + ORR1D2 LTR MaLR 12 365 -5 5 1132 817 167 0 20 chr11 71806192 71806339 -50037517 + B1_Mus2 SINE Alu 2 145 -2 5 1132 513 289 138 27 chr11 71806797 71807353 -50036503 + L1ME3B LINE L1 5284 5938 -241 5 1132 930 50 0 8 chr11 71807603 71807724 -50036132 + B1_Mus2 SINE Alu 27 146 -1 5 1132 188 56 83 0 chr11 71807728 71807764 -50036092 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1132 246 203 12 86 chr11 71807814 71807895 -50035961 - MLT1J1 LTR MaLR -347 97 23 5 1132 684 274 19 7 chr11 71807897 71808051 -50035805 + MTEb LTR MaLR 6 161 -218 5 1132 540 0 0 0 chr11 71808051 71808111 -50035745 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 1132 426 224 223 34 chr11 71808113 71808261 -50035595 + MTEb LTR MaLR 203 378 -1 5 1132 304 255 139 56 chr11 71808354 71808499 -50035357 - MLT1A0 LTR MaLR -16 392 225 5 1132 566 223 62 0 chr11 71808576 71808688 -50035168 - B3 SINE B2 -97 119 1 5 1132 3053 80 15 2 chr11 71808700 71809101 -50034755 - MTB_Mm LTR MaLR -1 406 1 5 1132 237 213 61 76 chr11 71809878 71809944 -50033912 - MIR SINE MIR -108 100 36 5 1132 245 250 21 54 chr11 71809989 71810082 -50033774 + ORSL-2b DNA Tip100 60 149 -359 5 1132 23 0 0 0 chr11 71810180 71810203 -50033653 + AT_rich Low_complexity Low_complexity 1 23 0 5 1132 309 326 68 33 chr11 71810800 71810998 -50032858 + MIR3 SINE MIR 2 197 -11 5 1132 728 299 111 68 chr11 71811335 71812084 -50031772 - L1MEf LINE L1 -4552 1648 868 5 1132 189 94 0 0 chr11 71812140 71812172 -50031684 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1132 713 277 67 11 chr11 71812181 71812360 -50031496 - B3 SINE B2 -1 215 27 5 1132 2588 95 90 3 chr11 71812518 71812907 -50030949 - L1_Mus3 LINE L1 -3 6635 6213 5 1132 232 195 0 0 chr11 71812908 71812949 -50030907 - B3A SINE B2 -157 41 1 5 1132 394 321 74 52 chr11 71812962 71813192 -50030664 - L1MEf LINE L1 -5416 784 550 5 1132 259 327 99 9 chr11 71813646 71813757 -50030099 - L1MEf LINE L1 -5902 192 72 5 1132 466 274 41 51 chr11 71813793 71813989 -50029867 + B3A SINE B2 2 195 -3 5 1132 552 306 83 94 chr11 71814169 71814530 -50029326 + ORR1E LTR MaLR 1 357 -2 5 1132 421 289 10 0 chr11 71814836 71814940 -50028916 + MLT2B4 LTR ERVL 3 107 -449 5 1132 720 232 170 102 chr11 71814942 71814979 -50028877 - MT2B LTR ERVL -3 472 440 5 1132 432 0 0 0 chr11 71814979 71815027 -50028829 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1132 944 227 76 84 chr11 71815027 71815431 -50028425 - MT2B LTR ERVL -117 484 1 5 1132 358 290 19 29 chr11 71815431 71815534 -50028322 + MLT2B4 LTR ERVL 100 201 -213 5 1132 780 297 96 32 chr11 71815607 71815983 -50027873 - MER20B DNA MER1_type -58 725 326 5 1132 1387 249 4 4 chr11 71818717 71818995 -50024861 + B4 SINE B4 13 290 -2 5 1132 993 74 0 0 chr11 71818996 71819144 -50024712 + (GA)n Simple_repeat Simple_repeat 1 148 0 5 1132 278 93 0 65 chr11 71819491 71819537 -50024319 - PB1D10 SINE Alu -5 112 70 5 1132 22 0 0 0 chr11 71819971 71819993 -50023863 + AT_rich Low_complexity Low_complexity 1 22 0 5 1132 477 0 0 0 chr11 71820069 71820122 -50023734 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1132 180 302 0 0 chr11 71820285 71820328 -50023528 + L2 LINE L2 2099 2141 -1278 5 1132 766 117 0 58 chr11 71820787 71820978 -50022878 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1132 215 105 53 0 chr11 71820986 71821024 -50022832 + (CATA)n Simple_repeat Simple_repeat 3 42 0 5 1132 750 135 0 41 chr11 71821029 71821323 -50022533 + (CA)n Simple_repeat Simple_repeat 1 281 0 5 1132 240 240 92 13 chr11 71821323 71821399 -50022457 + Charlie15a DNA MER1_type 127 208 -16 5 1132 292 338 14 0 chr11 71821480 71821554 -50022302 + ID4 SINE ID 6 80 -3 5 1132 563 335 6 0 chr11 71821803 71821964 -50021892 - MER58A DNA MER1_type -8 216 55 5 1132 287 263 50 20 chr11 71822001 71822102 -50021754 + PB1 SINE Alu 9 112 -15 5 1132 685 241 14 0 chr11 71822142 71822283 -50021573 + B1_Mur1 SINE Alu 1 143 -6 5 1132 192 77 0 0 chr11 71822324 71822350 -50021506 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 5 1132 258 338 139 7 chr11 71822785 71822922 -50020934 - ORR1E LTR MaLR 0 370 216 5 1132 1564 203 125 6 chr11 71822936 71823288 -50020568 + MTD LTR MaLR 7 400 -19 5 1132 219 69 0 0 chr11 71823288 71823317 -50020539 + (TTA)n Simple_repeat Simple_repeat 1 29 0 5 1132 286 299 114 63 chr11 71823357 71823532 -50020324 - ORR1E LTR MaLR -163 196 6 5 1132 276 315 37 49 chr11 71823532 71823662 -50020194 - MIR3 SINE MIR -107 161 24 5 1132 192 315 64 21 chr11 71823916 71824010 -50019846 + MIR3 SINE MIR 87 184 -24 5 1132 489 294 69 55 chr11 71824385 71824659 -50019197 + B4A SINE B4 1 278 -14 5 1132 200 282 0 170 chr11 71825409 71825503 -50018353 - MIRc SINE MIR -91 185 108 5 1133 685 254 21 21 chr11 71827575 71827768 -50016088 + B3A SINE B2 5 197 -1 5 1133 948 218 18 28 chr11 71827791 71828008 -50015848 + B3 SINE B2 1 215 -1 5 1133 2452 249 88 19 chr11 71828307 71828980 -50014876 - RCHARR1 DNA MER1_type 0 974 256 5 1133 779 246 96 20 chr11 71828998 71829197 -50014659 - RCHARR1 DNA MER1_type -758 216 3 5 1133 761 150 7 15 chr11 71829381 71829516 -50014340 + ORR1C1-int LTR MaLR 1236 1369 -1 5 1133 1521 201 58 3 chr11 71829522 71829832 -50014024 + ORR1C1 LTR MaLR 52 378 0 5 1133 554 322 83 45 chr11 71829924 71830454 -50013402 - L2 LINE L2 -582 2837 2288 5 1133 270 0 0 0 chr11 71831153 71831183 -50012673 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1133 369 0 0 0 chr11 71831183 71831223 -50012633 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1133 491 266 70 0 chr11 71831224 71831352 -50012504 - B4A SINE B4 -48 244 108 5 1133 424 266 123 15 chr11 71832512 71832642 -50011214 + B1F SINE Alu 1 144 -5 5 1133 560 131 13 69 chr11 71832647 71833030 -50010826 + GA-rich Low_complexity Low_complexity 1 361 0 5 1133 612 278 170 35 chr11 71833335 71833778 -50010078 - MLT1D LTR MaLR -2 503 1 5 1133 2478 141 14 0 chr11 71833781 71834143 -50009713 - ORR1B2 LTR MaLR 0 367 1 5 1133 238 325 13 13 chr11 71834831 71834909 -50008947 - PB1D10 SINE Alu -19 98 21 5 1133 244 208 21 0 chr11 71835202 71835250 -50008606 + ID_B1 SINE B4 157 205 -19 5 1133 324 0 0 0 chr11 71835570 71835606 -50008250 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1133 228 259 0 0 chr11 71836129 71836183 -50007673 - MIRc SINE MIR -135 133 80 5 1133 218 250 71 0 chr11 71836368 71836424 -50007432 + RSINE1 SINE B4 84 143 -22 5 1133 749 256 125 15 chr11 71836458 71836772 -50007084 + L1MA4A LINE L1 5532 5938 -365 5 1133 333 0 0 0 chr11 71836785 71836822 -50007034 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1133 250 214 65 43 chr11 71836825 71836918 -50006938 - MIR SINE MIR -166 96 2 5 1133 192 40 0 0 chr11 71837363 71837388 -50006468 + (G)n Simple_repeat Simple_repeat 1 25 0 5 1133 338 305 50 39 chr11 71837407 71837588 -50006268 + L1_Mur3 LINE L1 5266 5448 -432 5 1133 208 327 56 28 chr11 71838063 71838170 -50005686 - MER91B DNA Tip100 -28 162 53 5 1133 246 292 135 53 chr11 71838626 71838794 -50005062 + MLT1C LTR MaLR 208 389 -78 5 1133 840 309 82 36 chr11 71838794 71839150 -50004706 + MLT2B4 LTR ERVL 3 374 -182 5 1133 759 142 37 15 chr11 71839621 71839757 -50004099 + B1_Mus2 SINE Alu 9 147 0 5 1133 344 125 16 0 chr11 71839968 71840032 -50003824 + (CACG)n Simple_repeat Simple_repeat 1 65 0 5 1133 327 25 0 0 chr11 71840519 71840559 -50003297 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1133 249 109 0 0 chr11 71841809 71841855 -50002001 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1133 219 139 0 0 chr11 71841909 71841945 -50001911 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1133 831 249 5 10 chr11 71842011 71842206 -50001650 + B3A SINE B2 5 198 0 5 1133 397 228 38 0 chr11 71842370 71842449 -50001407 - ID2 SINE ID 0 83 2 5 1133 256 236 18 0 chr11 71842710 71842765 -50001091 + (CAGCC)n Simple_repeat Simple_repeat 4 59 0 5 1133 254 256 57 23 chr11 71843403 71843491 -50000365 + PB1D10 SINE Alu 24 114 -3 5 1133 214 156 0 62 chr11 71843650 71843698 -50000158 + C-rich Low_complexity Low_complexity 5 49 0 5 1133 288 284 0 12 chr11 71844368 71844450 -49999406 - Zaphod2 DNA Tip100 -3314 210 130 5 1133 445 337 60 0 chr11 71845246 71845430 -49998426 - MIR SINE MIR -54 208 14 5 1133 851 175 70 0 chr11 71846441 71846612 -49997244 - MTD LTR MaLR -236 183 1 5 1133 254 367 25 8 chr11 71846619 71846740 -49997116 + L2c LINE L2 3098 3220 -167 5 1133 465 287 30 91 chr11 71846976 71847175 -49996681 + B4A SINE B4 1 187 -105 5 1133 195 42 0 0 chr11 71847297 71847321 -49996535 + (TGGA)n Simple_repeat Simple_repeat 1 24 0 6 1133 826 246 84 0 chr11 71848599 71848802 -49995054 + ID_B1 SINE B4 1 220 -4 6 1133 287 345 21 7 chr11 71848858 71848998 -49994858 + L1MC5 LINE L1 7310 7451 -510 6 1133 723 244 0 71 chr11 71849142 71849354 -49994502 + B3A SINE B2 2 198 0 6 1133 357 24 0 0 chr11 71849465 71849507 -49994349 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1133 245 229 0 67 chr11 71851559 71851634 -49992222 + L1MEg1 LINE L1 241 310 -5925 6 1133 471 35 0 0 chr11 71853582 71853639 -49990217 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1133 846 110 0 0 chr11 71853994 71854149 -49989707 + (GA)n Simple_repeat Simple_repeat 1 155 0 6 1133 513 32 0 0 chr11 71854153 71854216 -49989640 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1133 349 204 18 72 chr11 71855076 71855187 -49988669 + B3A SINE B2 92 196 -2 6 1133 27 0 0 0 chr11 71855941 71855968 -49987888 + GC_rich Low_complexity Low_complexity 1 27 0 6 1133 251 333 49 56 chr11 71856884 71857027 -49986829 + L2a LINE L2 3280 3421 -5 6 1133 340 331 96 0 chr11 71857520 71857656 -49986200 - RSINE1 SINE B4 -15 150 2 6 1133 218 178 51 27 chr11 71858855 71858970 -49984886 + MIRc SINE MIR 53 169 -93 6 1133 2143 169 69 5 chr11 71865817 71866209 -49977647 + MTC LTR MaLR 5 421 0 6 1133 275 266 132 43 chr11 71866280 71866395 -49977461 + ORR1E LTR MaLR 2 126 -244 6 1133 375 23 0 0 chr11 71866865 71866909 -49976947 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1133 201 184 96 58 chr11 71867180 71867217 -49976639 - L2c LINE L2 -6 3381 3346 6 1133 180 0 0 0 chr11 71867217 71867237 -49976619 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1133 261 0 0 0 chr11 71867237 71867265 -49976591 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1133 201 184 96 58 chr11 71867265 71867278 -49976578 - L2c LINE L2 -42 3345 3329 6 1133 255 360 132 35 chr11 71867301 71867701 -49976155 + L2c LINE L2 2517 2955 -464 6 1133 529 126 16 16 chr11 71867895 71868024 -49975832 + (TCTCTG)n Simple_repeat Simple_repeat 4 132 0 6 1133 321 26 0 0 chr11 71868025 71868063 -49975793 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1133 807 214 14 0 chr11 71868100 71868245 -49975611 + B1_Mur1 SINE Alu 3 149 0 6 1133 185 333 148 11 chr11 71868563 71868745 -49975111 + L2c LINE L2 3079 3285 -102 6 1133 979 183 59 25 chr11 71868746 71868948 -49974908 - MER58B DNA MER1_type 0 341 133 6 1133 555 16 0 0 chr11 71868971 71869035 -49974821 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1133 245 204 171 72 chr11 71869076 71869130 -49974726 - MER5A DNA MER1_type -23 166 112 6 1133 207 0 0 0 chr11 71869130 71869153 -49974703 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 1133 245 204 171 72 chr11 71869153 71869209 -49974647 - MER5A DNA MER1_type -78 111 46 6 1133 184 302 109 45 chr11 71870155 71870198 -49973658 + MIRb SINE MIR 67 117 -151 6 1133 432 0 0 0 chr11 71870198 71870246 -49973610 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1133 184 302 109 45 chr11 71870246 71870358 -49973498 + MIRb SINE MIR 118 232 -36 6 1133 1727 268 108 23 chr11 71873674 71874339 -49969517 + L1MB7 LINE L1 5453 6174 -10 6 1133 182 250 0 0 chr11 71875450 71875490 -49968366 + L2 LINE L2 1744 1783 -1636 6 1133 298 289 128 26 chr11 71875742 71875898 -49967958 + L2 LINE L2 2232 2403 -1016 6 1133 2132 194 39 15 chr11 71879262 71879669 -49964187 - MTD LTR MaLR -2 417 1 6 1133 212 0 36 0 chr11 71881280 71881308 -49962548 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1133 499 208 67 108 chr11 71881724 71881918 -49961938 - MamRep137 DNA TcMar? -182 262 77 6 1133 546 233 126 19 chr11 71882109 71882315 -49961541 - Tigger7 DNA MER2_type -52 2439 2212 6 1133 1063 292 147 11 chr11 71882290 71882650 -49961206 - Tigger7 DNA MER2_type -2082 409 1 6 1133 651 184 239 31 chr11 71882698 71882861 -49960995 + B3A SINE B2 1 197 -1 6 1133 214 226 19 19 chr11 71883521 71883575 -49960281 - MIR SINE MIR -56 152 99 6 1133 310 342 16 16 chr11 71885946 71886068 -49957788 + L3b LINE CR1 187 308 -174 6 1133 205 220 0 48 chr11 71886357 71886419 -49957437 + (CCCA)n Simple_repeat Simple_repeat 2 60 0 6 1133 262 292 14 0 chr11 71887388 71887460 -49956396 - MIR SINE MIR -113 149 77 6 1133 227 291 86 32 chr11 71888294 71888445 -49955411 - MIRm SINE MIR -48 160 5 6 1133 422 347 49 23 chr11 71889095 71889300 -49954556 + MLT2B1 LTR ERVL 321 535 -19 6 1133 254 333 116 55 chr11 71889323 71889344 -49954512 - B2_Mm2 SINE B2 -1 194 3 6 1133 549 318 50 38 chr11 71889344 71889504 -49954352 - RSINE1 SINE B4 0 165 4 6 1133 798 253 15 51 chr11 71889522 71889718 -49954138 - B3 SINE B2 0 216 28 6 1133 211 204 0 22 chr11 71889780 71889825 -49954031 + ID4 SINE ID 1 44 -39 6 1133 750 261 28 0 chr11 71890080 71890260 -49953596 + MER58A DNA MER1_type 40 224 0 6 1133 261 337 90 34 chr11 71890980 71891069 -49952787 - B4 SINE B4 -14 278 185 6 1133 546 269 25 25 chr11 71891096 71891218 -49952638 - B4 SINE B4 -169 123 2 6 1133 225 309 59 47 chr11 71891259 71891344 -49952512 - B1_Mm SINE Alu -51 96 11 6 1133 181 279 0 0 chr11 71891534 71891577 -49952279 - MIR SINE MIR -98 164 122 6 1133 183 302 127 0 chr11 71892000 71892063 -49951793 + MIRb SINE MIR 26 96 -172 6 1133 270 0 0 0 chr11 71892893 71892923 -49950933 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 6 1133 318 259 53 13 chr11 71892956 71893047 -49950809 - PB1D7 SINE Alu -3 146 40 6 1133 915 144 0 8 chr11 71893047 71893180 -49950676 - B1_Mus1 SINE Alu -12 136 5 6 1133 284 326 47 68 chr11 71893180 71893236 -49950620 - B1F SINE Alu -94 55 2 6 1133 199 404 37 6 chr11 71893307 71893469 -49950387 + L2c LINE L2 3023 3189 -198 6 1133 227 376 60 12 chr11 71896265 71896432 -49947424 + L3 LINE CR1 4302 4476 -13 6 1133 295 170 132 33 chr11 71896900 71896991 -49946865 + ORR1E LTR MaLR 7 106 -253 6 1133 180 0 0 0 chr11 71897060 71897080 -49946776 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1133 275 312 71 9 chr11 71897580 71897693 -49946163 + L1MC LINE L1 5505 5624 -2258 6 1133 501 80 0 0 chr11 71899374 71899449 -49944407 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1133 1262 182 5 0 chr11 71899510 71899719 -49944137 - B3 SINE B2 -5 211 2 6 1133 267 31 0 0 chr11 71899735 71899767 -49944089 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1133 698 269 20 14 chr11 71899816 71899963 -49943893 - RSINE1 SINE B4 -15 150 3 6 1133 280 305 43 49 chr11 71899966 71900128 -49943728 + L2a LINE L2 3264 3424 -2 6 1133 303 146 0 0 chr11 71902031 71902086 -49941770 + (TGG)n Simple_repeat Simple_repeat 2 56 0 6 1133 226 300 133 51 chr11 71902650 71902808 -49941048 - MTEa LTR MaLR -3 376 206 6 1133 430 281 11 60 chr11 71903384 71903566 -49940290 - Charlie18a DNA MER1_type -70 272 100 6 1133 371 336 25 30 chr11 71903965 71903982 -49939874 + ID_B1 SINE B4 67 126 -166 6 1133 491 298 0 0 chr11 71903982 71904092 -49939764 + B1F1 SINE Alu 4 113 -7 6 1133 371 336 25 30 chr11 71904092 71904117 -49939739 + ID_B1 SINE B4 127 227 -65 6 1133 658 291 96 22 chr11 71904154 71904467 -49939389 + MER74B LTR ERVL 67 402 -220 6 1133 528 228 80 40 chr11 71905303 71905372 -49938484 + RSINE1 SINE B4 1 68 -97 6 1133 470 17 17 0 chr11 71905372 71905431 -49938425 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1133 528 228 80 40 chr11 71905431 71905512 -49938344 + RSINE1 SINE B4 69 157 -8 6 1133 185 284 146 10 chr11 71906896 71906999 -49936857 + MIRb SINE MIR 20 136 -132 6 1133 212 333 161 12 chr11 71907072 71907233 -49936623 + MIR SINE MIR 66 250 -12 6 1133 240 111 0 0 chr11 71907243 71907279 -49936577 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1133 776 157 42 14 chr11 71907286 71907428 -49936428 - B1_Mur1 SINE Alu -3 146 1 6 1133 259 315 33 11 chr11 71908626 71908716 -49935140 - MER45C DNA Tip100 -430 523 432 6 1133 331 328 98 16 chr11 71908772 71908955 -49934901 - MER45C DNA Tip100 -653 300 103 6 1133 348 222 37 92 chr11 71909400 71909509 -49934347 - PB1D10 SINE Alu -7 110 8 6 1133 230 172 0 112 chr11 71909856 71909954 -49933902 + (CTGGGG)n Simple_repeat Simple_repeat 6 92 0 6 1133 402 280 28 0 chr11 71910805 71910912 -49932944 + PB1D7 SINE Alu 3 112 -8 6 1133 261 0 0 0 chr11 71911969 71911998 -49931858 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1133 531 56 0 0 chr11 71911999 71912070 -49931786 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 1133 576 311 46 35 chr11 71912087 71912260 -49931596 - MER45A DNA Tip100 -1 177 3 6 1133 525 304 63 35 chr11 71912787 71912961 -49930895 - MER5A DNA MER1_type -7 182 4 6 1133 386 278 134 11 chr11 71913001 71913219 -49930637 + LTR86A1 LTR ERVL 3 257 -256 6 1133 1036 181 55 5 chr11 71913384 71913584 -49930272 + B3 SINE B2 1 210 -6 6 1133 1342 258 44 33 chr11 71913610 71913848 -49930008 + L1MB7 LINE L1 4039 4272 -1874 6 1133 222 91 0 0 chr11 71913848 71913881 -49929975 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1133 1342 258 44 33 chr11 71913881 71914092 -49929764 + L1MB7 LINE L1 4273 4493 -1653 6 1133 776 281 77 11 chr11 71914093 71914367 -49929489 + B4A SINE B4 1 292 0 6 1133 480 35 0 0 chr11 71914394 71914452 -49929404 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1133 198 0 0 0 chr11 71914460 71914482 -49929374 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 6 1133 463 284 101 16 chr11 71914550 71914808 -49929048 + L1MB7 LINE L1 4670 4949 -1197 6 1133 733 235 29 0 chr11 71914811 71914947 -49928909 + B3A SINE B2 4 143 -55 6 1133 1257 41 7 0 chr11 71914982 71915128 -49928728 - B1_Mm SINE Alu 0 147 1 6 1133 1086 223 103 55 chr11 71915155 71915169 -49928687 + L1MB7 LINE L1 4944 4957 -1189 6 1133 1299 96 21 5 chr11 71915169 71915357 -49928499 + B2_Mm1t SINE B2 2 192 -1 6 1133 1086 227 126 46 chr11 71915357 71915861 -49927995 + L1MB7 LINE L1 4958 5516 -668 6 1133 36 40 0 0 chr11 71915979 71916029 -49927827 + AT_rich Low_complexity Low_complexity 1 50 0 6 1133 186 43 0 0 chr11 71916066 71916089 -49927767 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1133 180 111 0 0 chr11 71916165 71916192 -49927664 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1133 198 103 0 0 chr11 71916210 71916239 -49927617 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1133 226 165 0 149 chr11 71916313 71916434 -49927422 + (CA)n Simple_repeat Simple_repeat 1 103 0 6 1133 278 222 0 100 chr11 71916450 71916540 -49927316 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 1133 180 0 0 0 chr11 71916557 71916577 -49927279 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1133 462 275 82 0 chr11 71916583 71916765 -49927091 + L1MB7 LINE L1 5709 5905 -279 6 1133 419 266 103 14 chr11 71916792 71916937 -49926919 + L1MB7 LINE L1 6008 6165 -19 6 1133 1199 81 0 0 chr11 71916954 71917102 -49926754 - B1_Mus1 SINE Alu 0 148 1 6 1133 400 146 388 0 chr11 71917566 71917669 -49926187 + B1_Mur2 SINE Alu 1 143 -6 7 1133 230 216 0 73 chr11 71917684 71917739 -49926117 - MLT2E LTR ERVL -399 229 179 7 1133 346 314 15 97 chr11 71918067 71918201 -49925655 + RSINE1 SINE B4 2 124 -41 7 1133 279 0 0 0 chr11 71918201 71918232 -49925624 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1133 810 106 7 43 chr11 71918408 71918546 -49925310 + B1_Mur3 SINE Alu 17 149 0 7 1133 336 244 7 68 chr11 71918796 71918930 -49924926 - Arthur1B DNA Tip100 -7 1218 1095 7 1133 1325 92 16 5 chr11 71919386 71919571 -49924285 - B2_Mm2 SINE B2 -8 187 1 7 1133 982 196 85 5 chr11 71919627 71919827 -49924029 + B3 SINE B2 1 216 0 7 1133 379 303 102 8 chr11 71919901 71920064 -49923792 + L1M5 LINE L1 4132 4303 -1843 7 1133 595 264 42 84 chr11 71920068 71920258 -49923598 + MTEa LTR MaLR 1 182 -197 7 1133 431 282 246 8 chr11 71920258 71920494 -49923362 + B4A SINE B4 1 292 0 7 1133 279 0 0 0 chr11 71920542 71920573 -49923283 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 7 1133 420 260 58 0 chr11 71920651 71920755 -49923101 + MTEa LTR MaLR 265 374 -5 7 1133 319 275 43 11 chr11 71920759 71920851 -49923005 + L1M5 LINE L1 5239 5333 -813 7 1133 1163 65 0 0 chr11 71920875 71921013 -49922843 + B1_Mm SINE Alu 2 139 -8 7 1133 387 0 0 0 chr11 71921013 71921056 -49922800 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1133 474 178 0 0 chr11 71921057 71921147 -49922709 + GA-rich Low_complexity Low_complexity 1 90 0 7 1133 542 155 113 28 chr11 71921157 71921263 -49922593 + B1_Mur2 SINE Alu 34 148 -1 7 1133 925 217 11 11 chr11 71921292 71921474 -49922382 + B3A SINE B2 1 182 -16 7 1133 1201 265 127 7 chr11 71921834 71922283 -49921573 + L1MB3 LINE L1 5678 6180 -3 7 1133 326 267 7 0 chr11 71922633 71922783 -49921073 + (CA)n Simple_repeat Simple_repeat 1 151 0 7 1133 858 147 20 34 chr11 71923006 71923154 -49920702 + B1_Mur2 SINE Alu 3 148 -1 7 1133 882 146 18 0 chr11 71923158 71923329 -49920527 + GA-rich Low_complexity Low_complexity 3 176 0 7 1133 309 208 140 40 chr11 71924192 71924292 -49919564 - MIRb SINE MIR -45 223 114 7 1133 668 240 0 6 chr11 71925099 71925279 -49918577 + GA-rich Low_complexity Low_complexity 2 180 0 7 1133 315 314 143 8 chr11 71925289 71925408 -49918448 + MLT1A LTR MaLR 1 135 -224 7 1133 486 195 0 0 chr11 71925983 71926065 -49917791 - ID4 SINE ID 0 83 2 7 1133 388 288 76 0 chr11 71926280 71926398 -49917458 + MIRc SINE MIR 93 219 -49 7 1133 724 199 20 41 chr11 71927152 71927299 -49916557 + ID_B1 SINE B4 81 224 0 7 1133 229 282 90 60 chr11 71927174 71927340 -49916516 - YREP_Mm Unknown Unknown -1517 295 125 7 1133 918 298 32 25 chr11 71927340 71927622 -49916234 + B4A SINE B4 1 284 -8 7 1133 471 35 0 0 chr11 71927684 71927741 -49916115 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1133 194 333 35 35 chr11 71927752 71927839 -49916017 - MIR SINE MIR -106 156 70 7 1133 401 304 18 0 chr11 71927873 71927985 -49915871 + PB1D7 SINE Alu 1 114 -6 7 1133 885 45 0 0 chr11 71928689 71928799 -49915057 + (TC)n Simple_repeat Simple_repeat 1 110 0 7 1133 540 0 0 0 chr11 71928817 71928877 -49914979 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1133 306 0 0 0 chr11 71929103 71929137 -49914719 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1133 181 325 68 45 chr11 71929814 71929946 -49913910 - MIRm SINE MIR -101 175 41 7 1133 460 333 134 7 chr11 71930601 71930876 -49912980 - L1ME2 LINE L1 -163 6001 5692 7 1133 331 328 119 52 chr11 71931139 71931183 -49912673 - B3 SINE B2 -10 206 1 7 1133 467 236 22 22 chr11 71931183 71931332 -49912524 - B4 SINE B4 -13 152 1 7 1133 436 259 0 5 chr11 71931332 71931490 -49912366 - L1ME2 LINE L1 -740 5440 5291 7 1133 518 215 128 11 chr11 71931714 71931882 -49911974 + B4 SINE B4 1 186 -38 7 1133 211 348 35 69 chr11 71933001 71933174 -49910682 + L2b LINE L2 2937 3103 -272 7 1133 211 243 113 14 chr11 71933363 71933434 -49910422 + L2c LINE L2 3309 3386 -1 7 1133 255 337 76 0 chr11 71934108 71934200 -49909656 - MLT1I LTR MaLR -219 192 94 7 1133 468 335 49 6 chr11 71935130 71935313 -49908543 + MIR SINE MIR 46 236 -26 7 1133 579 255 54 43 chr11 71936314 71936572 -49907284 + L1MC LINE L1 4104 4364 -1782 7 1133 616 250 67 47 chr11 71936662 71936838 -49907018 + B3A SINE B2 2 184 -14 7 1133 342 0 0 0 chr11 71936838 71936876 -49906980 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1133 616 250 67 47 chr11 71936876 71936892 -49906964 + B3A SINE B2 185 198 0 7 1133 25 31 0 0 chr11 71936896 71936928 -49906928 + AT_rich Low_complexity Low_complexity 1 32 0 7 1133 659 223 28 35 chr11 71938138 71938282 -49905574 + B1_Mur1 SINE Alu 7 149 0 7 1133 295 354 42 54 chr11 71938322 71938489 -49905367 + RSINE1 SINE B4 1 165 0 7 1133 281 253 132 54 chr11 71938690 71938866 -49904990 + MIRc SINE MIR 4 191 -77 7 1133 207 0 0 0 chr11 71939976 71939999 -49903857 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 7 1133 432 55 0 0 chr11 71940169 71940224 -49903632 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1133 476 146 0 11 chr11 71940371 71940461 -49903395 + CT-rich Low_complexity Low_complexity 2 90 0 7 1133 275 294 35 63 chr11 71940526 71940653 -49903203 + MIR SINE MIR 100 230 -38 7 1133 486 309 100 7 chr11 71940684 71940834 -49903022 + RSINE1 SINE B4 2 165 0 7 1133 558 203 0 0 chr11 71940836 71940979 -49902877 + (CA)n Simple_repeat Simple_repeat 1 143 0 7 1133 405 311 103 43 chr11 71942145 71942330 -49901526 - RMER30 DNA MER1_type -2 200 5 7 1133 190 274 124 76 chr11 71944734 71944880 -49898976 - MIRm SINE MIR -90 186 39 7 1133 317 329 22 3 chr11 71944843 71944967 -49898889 + MIR SINE MIR 42 173 -103 7 1133 204 150 0 24 chr11 71945666 71945707 -49898149 + (TTG)n Simple_repeat Simple_repeat 1 40 0 7 1133 226 258 15 15 chr11 71947047 71947114 -49896742 + MIR3 SINE MIR 104 170 -38 7 1133 209 57 0 28 chr11 71947582 71947618 -49896238 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1133 195 307 18 73 chr11 71948427 71948536 -49895320 + L2b LINE L2 3272 3374 -1 7 1133 202 224 30 0 chr11 71949264 71949331 -49894525 + (CCG)n Simple_repeat Simple_repeat 3 71 0 7 1133 23 33 0 0 chr11 71949365 71949395 -49894461 + GC_rich Low_complexity Low_complexity 1 30 0 7 1133 29 70 0 0 chr11 71949423 71949480 -49894376 + GC_rich Low_complexity Low_complexity 1 57 0 7 1133 232 337 0 98 chr11 71950634 71950726 -49893130 + MER81 DNA AcHobo 20 102 -12 7 1133 558 108 0 0 chr11 71951272 71951355 -49892501 + (TG)n Simple_repeat Simple_repeat 2 84 0 7 1133 665 24 12 0 chr11 71953421 71953504 -49890352 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 7 1133 318 142 65 19 chr11 71953567 71953675 -49890181 + (TA)n Simple_repeat Simple_repeat 1 113 0 7 1133 385 216 55 33 chr11 71953680 71953771 -49890085 + B3 SINE B2 46 138 -78 7 1133 250 292 0 50 chr11 71953859 71953960 -49889896 - RSINE1 SINE B4 -62 103 8 7 1133 732 149 9 0 chr11 71955098 71955212 -49888644 + PB1D9 SINE Alu 5 119 -1 7 1133 195 42 0 0 chr11 71955225 71955249 -49888607 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 7 1133 291 190 0 0 chr11 71955249 71955307 -49888549 + GA-rich Low_complexity Low_complexity 1 58 0 7 1133 531 228 0 0 chr11 71955490 71955591 -49888265 + ID_B1 SINE B4 124 224 0 7 1133 298 313 37 56 chr11 71955848 71955962 -49887894 - MIR SINE MIR -44 218 106 7 1133 1437 78 5 20 chr11 71955962 71956157 -49887699 - B2_Mm1a SINE B2 0 193 2 7 1133 199 303 0 128 chr11 71956157 71956208 -49887648 - MIRm SINE MIR -168 108 66 7 1133 186 43 0 0 chr11 71956365 71956388 -49887468 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 7 1133 378 0 0 0 chr11 71956403 71956445 -49887411 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1133 223 273 197 0 chr11 71957396 71957462 -49886394 + B4A SINE B4 1 79 -213 7 1133 578 316 147 4 chr11 71957562 71957807 -49886049 + B4A SINE B4 1 280 -12 7 1133 243 242 0 57 chr11 71957916 71957986 -49885870 + (CATA)n Simple_repeat Simple_repeat 3 68 0 7 1133 449 77 0 25 chr11 71958087 71958167 -49885689 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 7 1134 360 0 0 0 chr11 71959330 71959370 -49884486 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1134 351 0 0 0 chr11 71959370 71959408 -49884448 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1134 405 0 0 0 chr11 71959608 71959653 -49884203 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1134 3937 91 31 51 chr11 71959737 71959848 -49884008 + MT2B LTR ERVL 1 105 -496 7 1134 2968 56 47 5 chr11 71959848 71960228 -49883628 + MTA_Mm LTR MaLR 1 396 0 7 1134 3937 91 31 51 chr11 71960228 71960720 -49883136 + MT2B LTR ERVL 106 592 -9 7 1134 328 278 59 15 chr11 71960805 71960940 -49882916 - B1F1 SINE Alu -8 141 1 7 1134 207 0 0 0 chr11 71961305 71961328 -49882528 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1134 330 292 54 71 chr11 71962102 71962286 -49881570 + L2c LINE L2 3062 3242 -133 7 1134 903 144 231 0 chr11 71962558 71962731 -49881125 - B3 SINE B2 0 216 4 7 1134 828 123 55 48 chr11 71962749 71962894 -49880962 - B1_Mus1 SINE Alu -1 147 2 7 1134 276 262 0 24 chr11 71963082 71963164 -49880692 - PB1D10 SINE Alu -26 91 12 7 1134 750 221 21 0 chr11 71963100 71963245 -49880611 - ID_B1 SINE B4 -68 156 9 7 1134 306 233 116 8 chr11 71963572 71963693 -49880163 - MIRb SINE MIR -70 198 65 7 1134 356 325 76 38 chr11 71963761 71963918 -49879938 + MIRc SINE MIR 9 171 -97 7 1134 969 141 13 0 chr11 71965962 71966118 -49877738 + URR1B DNA MER1_type 68 225 0 7 1134 201 347 113 6 chr11 71967287 71967455 -49876401 + MIR SINE MIR 77 262 0 8 1134 585 264 175 43 chr11 71969337 71969889 -49873967 - L1MC4 LINE L1 -131 7911 7253 8 1134 551 98 8 24 chr11 71970063 71970189 -49873667 + (CA)n Simple_repeat Simple_repeat 2 125 0 8 1134 319 329 80 30 chr11 71970453 71970716 -49873140 - L1MEg LINE L1 -5467 617 342 8 1134 329 253 13 13 chr11 71970724 71970800 -49873056 + ID4_ SINE ID 3 78 -5 8 1134 334 337 17 52 chr11 71970919 71971091 -49872765 - L1MEg LINE L1 -5918 166 1 8 1134 233 308 137 29 chr11 71971250 71971454 -49872402 - HAL1 LINE L1 -607 1900 1675 8 1134 795 278 147 14 chr11 71971756 71972048 -49871808 + MLT1A LTR MaLR 33 363 -11 8 1134 774 294 6 0 chr11 71973893 71974070 -49869786 - B3A SINE B2 -20 178 1 8 1134 4578 102 86 7 chr11 71974776 71975477 -49868379 - RMER6A LTR ERVK 0 756 1 8 1134 316 312 208 20 chr11 71975788 71975914 -49867942 + L1ME2z LINE L1 4875 5022 -1124 8 1134 288 0 0 0 chr11 71975914 71975946 -49867910 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1134 316 312 208 20 chr11 71975946 71976064 -49867792 + L1ME2z LINE L1 5023 5165 -981 8 1134 229 289 0 0 chr11 71976273 71976325 -49867531 + tRNA-Ala-GCA tRNA tRNA 9 60 -15 8 1134 357 317 91 24 chr11 71976361 71976547 -49867309 + L1ME2z LINE L1 5231 5430 -734 8 1134 446 312 40 64 chr11 71976547 71976749 -49867107 + B3A SINE B2 2 198 0 8 1134 398 253 33 18 chr11 71976906 71977051 -49866805 + L1ME2z LINE L1 5560 5705 -2337 8 1134 314 195 138 0 chr11 71977054 71977141 -49866715 - B1F SINE Alu -9 140 42 8 1134 792 214 86 10 chr11 71977194 71977392 -49866464 - B3 SINE B2 0 216 4 8 1134 1363 84 21 0 chr11 71977400 71977591 -49866265 - B2_Mm2 SINE B2 0 195 1 8 1134 330 357 0 0 chr11 71977596 71977708 -49866148 + L1ME2z LINE L1 5711 5822 -342 8 1134 425 269 180 66 chr11 71977815 71978165 -49865691 + MLT1D LTR MaLR 108 497 -8 8 1134 339 225 106 28 chr11 71978300 71978442 -49865414 + L1ME2z LINE L1 6001 6153 -291 8 1134 216 239 0 0 chr11 71978486 71978532 -49865324 + GA-rich Low_complexity Low_complexity 3 48 0 8 1134 227 279 132 0 chr11 71978573 71978641 -49865215 - B4 SINE B4 -16 276 200 8 1134 793 175 8 0 chr11 71980771 71980897 -49862959 - B1_Mur2 SINE Alu -22 127 1 8 1134 450 0 0 0 chr11 71980956 71981006 -49862850 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 8 1134 194 207 11 44 chr11 71981116 71981207 -49862649 + CT-rich Low_complexity Low_complexity 3 90 0 8 1134 1241 90 11 38 chr11 71981358 71981542 -49862314 + B2_Mm2 SINE B2 2 180 -15 8 1134 1141 160 26 60 chr11 71983578 71983842 -49860014 + ORR1C2 LTR MaLR 125 384 0 8 1134 321 276 78 58 chr11 71983852 71984006 -49859850 + L1MD1 LINE L1 5616 5772 -470 8 1134 514 231 93 0 chr11 71984104 71984212 -49859644 + RSINE1 SINE B4 3 120 -45 8 1134 243 225 14 0 chr11 71984248 71984319 -49859537 + L1MD1 LINE L1 6000 6071 -171 8 1134 616 166 75 96 chr11 71984375 71984615 -49859241 + RMER17C LTR ERVK 100 334 -76 8 1134 383 258 86 7 chr11 71984662 71984814 -49859042 + L1MD1 LINE L1 6079 6242 0 8 1134 1682 26 5 0 chr11 71984837 71985029 -49858827 - B2_Mm1t SINE B2 0 193 1 8 1134 1345 68 68 0 chr11 71985059 71985235 -49858621 + B2_Mm2 SINE B2 2 189 -6 8 1134 439 243 83 9 chr11 71985358 71985466 -49858390 - PB1D7 SINE Alu -2 118 3 8 1134 1172 146 39 78 chr11 71985520 71985623 -49858233 + ORR1D1 LTR MaLR 1 102 -272 8 1134 5002 80 17 60 chr11 71985623 71986408 -49857448 + RMER17A LTR ERVK 1 751 0 8 1134 1172 146 39 78 chr11 71986408 71986535 -49857321 + ORR1D1 LTR MaLR 103 222 -152 8 1134 437 130 5 0 chr11 71986561 71986633 -49857223 + ORR1D1 LTR MaLR 309 383 -1 8 1134 310 316 0 58 chr11 71987478 71987582 -49856274 + L1ME3B LINE L1 5958 6055 -185 8 1134 21 0 0 0 chr11 71990466 71990487 -49853369 + AT_rich Low_complexity Low_complexity 1 21 0 8 1134 1378 140 28 0 chr11 71990667 71990881 -49852975 - URR1A DNA MER1_type 0 226 7 8 1134 608 253 50 71 chr11 71990881 71990898 -49852958 + CYRA11_Mm Unknown Y-chromosome 221 397 -220 8 1134 286 274 68 42 chr11 71991557 71991675 -49852181 - L2c LINE L2 0 3387 3267 8 1134 1016 256 126 26 chr11 71992556 71992915 -49850941 + MTD LTR MaLR 1 421 0 8 1134 1141 156 88 0 chr11 71993106 71993298 -49850558 - B3 SINE B2 -6 210 2 8 1134 632 229 170 36 chr11 71993464 71993651 -49850205 - B3 SINE B2 -25 191 1 8 1134 231 204 0 22 chr11 71993814 71993859 -49849997 + MIRb SINE MIR 62 105 -163 8 1134 1608 27 37 0 chr11 71994441 71994628 -49849228 + B2_Mm2 SINE B2 2 195 0 8 1134 2164 159 59 30 chr11 71994691 71995098 -49848758 + MTC LTR MaLR 1 419 -2 8 1134 872 235 27 0 chr11 71995130 71995317 -49848539 + B3 SINE B2 9 200 -16 8 1134 877 154 0 0 chr11 71995336 71995459 -49848397 - B3 SINE B2 -93 123 1 8 1134 288 0 0 0 chr11 71995476 71995508 -49848348 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1134 426 226 151 0 chr11 71995512 71995605 -49848251 - PB1D9 SINE Alu -13 107 1 8 1134 235 237 118 0 chr11 71995840 71995933 -49847923 + L1MD LINE L1 4535 4638 -1508 8 1134 314 203 0 33 chr11 71995938 71995999 -49847857 + B1_Mus2 SINE Alu 1 59 -88 8 1134 456 236 0 0 chr11 71996020 71996198 -49847658 + GA-rich Low_complexity Low_complexity 2 179 0 8 1134 444 250 0 0 chr11 71996236 71996596 -49847260 + GA-rich Low_complexity Low_complexity 1 360 0 8 1134 312 258 91 20 chr11 71996605 71996704 -49847152 + B1_Mur1 SINE Alu 42 147 -2 8 1134 933 237 10 35 chr11 71996753 71996950 -49846906 + B3 SINE B2 17 208 -8 8 1134 456 338 139 31 chr11 71997242 71997566 -49846290 + L1M5 LINE L1 5031 5389 -757 8 1134 270 240 51 145 chr11 71997566 71997683 -49846173 + MT2B LTR ERVL 152 257 -344 8 1134 800 164 14 41 chr11 71997580 71997726 -49846130 + B1_Mur4 SINE Alu 9 150 0 8 1134 261 316 25 50 chr11 71998051 71998131 -49845725 + 7SLRNA srpRNA srpRNA 5 82 -232 8 1134 245 303 53 0 chr11 71998292 71998368 -49845488 + ID4 SINE ID 2 81 -2 8 1134 2267 248 38 23 chr11 71998686 71999286 -49844570 + Lx5 LINE L1 6425 7033 -17 8 1134 456 51 0 0 chr11 71999287 71999346 -49844510 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1134 243 242 189 0 chr11 72000114 72000209 -49843647 - MIRc SINE MIR -96 172 60 1 1134 459 267 356 3 chr11 72000264 72000598 -49843258 + MER21B LTR ERV1 265 716 -147 2 1134 499 250 0 0 chr11 72000938 72001042 -49842814 + PB1D9 SINE Alu 4 107 -13 3 1134 294 170 0 0 chr11 72001105 72001158 -49842698 + B3A SINE B2 67 119 -79 4 1134 455 254 24 24 chr11 72001378 72001503 -49842353 + RSINE1 SINE B4 4 128 -37 5 1134 422 286 90 60 chr11 72001743 72001877 -49841979 + B1F SINE Alu 1 138 -11 6 1134 325 337 70 33 chr11 72002008 72002223 -49841633 + L1M5 LINE L1 4270 4492 -1654 7 1134 349 260 79 109 chr11 72002360 72002589 -49841267 + L1M4 LINE L1 5598 5751 -893 8 1134 8531 123 116 12 chr11 72005203 72007710 -49836146 + L1VL2 LINE L1 501 3288 -2595 9 1134 417 246 31 21 chr11 72008399 72008501 -49835355 + PB1D9 SINE Alu 3 107 -42 1 1134 470 17 17 0 chr11 72008501 72008560 -49835296 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1134 329 291 90 52 chr11 72008560 72008591 -49835265 + B1F SINE Alu 108 141 -8 1 1134 1289 90 28 0 chr11 72011358 72011536 -49832320 - B2_Mm1t SINE B2 -9 184 2 1 1134 390 85 0 0 chr11 72012519 72012578 -49831278 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1134 189 0 0 0 chr11 72013502 72013523 -49830333 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1 1134 777 194 45 0 chr11 72013764 72013898 -49829958 + B1_Mus1 SINE Alu 1 140 -8 1 1134 201 121 0 0 chr11 72013899 72013932 -49829924 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1134 708 80 0 0 chr11 72013933 72014033 -49829823 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1134 895 104 119 0 chr11 72014046 72014180 -49829676 + B1_Mur4 SINE Alu 1 150 0 1 1134 201 119 43 29 chr11 72014182 72014251 -49829605 + A-rich Low_complexity Low_complexity 3 72 0 1 1134 306 0 0 0 chr11 72014304 72014338 -49829518 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1134 333 68 0 0 chr11 72014338 72014382 -49829474 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1134 221 281 0 0 chr11 72014427 72014484 -49829372 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1134 241 274 16 0 chr11 72014661 72014723 -49829133 + GA-rich Low_complexity Low_complexity 6 68 0 2 1134 466 268 149 60 chr11 72014744 72015046 -49828810 + L1MC4a LINE L1 5553 5881 -2001 2 1134 350 318 73 9 chr11 72015064 72015283 -49828573 + L1MC4a LINE L1 5928 6160 -1722 2 1134 279 321 0 58 chr11 72015531 72015617 -49828239 + B3A SINE B2 104 184 -14 2 1134 342 323 108 42 chr11 72015628 72015887 -49827969 + L1MC4a LINE L1 7765 8040 -2 2 1134 235 234 28 133 chr11 72016688 72016831 -49827025 + L2c LINE L2 3250 3377 -10 2 1134 24 0 0 0 chr11 72020546 72020570 -49823286 + GC_rich Low_complexity Low_complexity 1 24 0 2 1134 929 150 7 0 chr11 72022999 72023146 -49820710 + B1_Mur4 SINE Alu 2 149 -1 2 1134 324 317 29 0 chr11 72023642 72023746 -49820110 + PB1D10 SINE Alu 2 108 -9 2 1134 1007 224 5 9 chr11 72023787 72024003 -49819853 + B3 SINE B2 2 216 0 3 1134 459 212 34 1 chr11 72024009 72024114 -49819742 + PB1D7 SINE Alu 3 114 -6 3 1134 540 306 27 60 chr11 72024121 72024305 -49819551 + B3A SINE B2 21 198 0 3 1134 2452 134 112 45 chr11 72024550 72025054 -49818802 + MT2B LTR ERVL 1 593 -8 3 1134 25 31 0 0 chr11 72025225 72025257 -49818599 + AT_rich Low_complexity Low_complexity 1 32 0 3 1134 361 290 95 19 chr11 72025826 72025984 -49817872 + L3 LINE CR1 4228 4397 -92 3 1134 1139 66 0 0 chr11 72026230 72026367 -49817489 + B1_Mus1 SINE Alu 2 138 -10 3 1134 261 0 0 0 chr11 72026367 72026396 -49817460 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1134 670 209 9 0 chr11 72026397 72026512 -49817344 - B1_Mur1 SINE Alu -17 132 17 3 1134 379 302 15 67 chr11 72026512 72026532 -49817324 - ID_B1 SINE B4 -17 207 80 3 1134 673 190 33 0 chr11 72026560 72026681 -49817175 - B1_Mus1 SINE Alu -10 138 14 4 1134 195 283 32 32 chr11 72026754 72026816 -49817040 + MIRb SINE MIR 191 252 -16 4 1134 402 195 0 0 chr11 72027771 72027853 -49816003 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1134 315 329 72 7 chr11 72030017 72030155 -49813701 - L2a LINE L2 -228 3198 3052 4 1134 373 288 7 96 chr11 72030458 72030604 -49813252 + MER20 DNA MER1_type 87 219 0 4 1134 387 0 0 0 chr11 72031516 72031559 -49812297 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1134 656 225 0 60 chr11 72032035 72032186 -49811670 + B1F1 SINE Alu 2 143 -6 4 1134 650 261 0 0 chr11 72032224 72032354 -49811502 + RSINE1 SINE B4 1 130 -35 4 1134 49 90 0 0 chr11 72032369 72032502 -49811354 + AT_rich Low_complexity Low_complexity 1 133 0 4 1134 454 130 0 0 chr11 72032760 72032829 -49811027 + PB1D9 SINE Alu 2 70 -50 4 1134 351 238 0 0 chr11 72032829 72032840 -49811016 + B4 SINE B4 87 166 -126 5 1134 269 313 88 87 chr11 72033020 72033864 -49809992 - L1MEc LINE L1 -4807 1593 736 5 1134 1141 76 7 0 chr11 72033864 72034009 -49809847 - B1_Mus2 SINE Alu 0 147 2 5 1134 269 313 88 87 chr11 72034009 72034141 -49809715 - L1MEc LINE L1 -5665 735 617 5 1134 355 244 201 59 chr11 72034206 72034445 -49809411 - L1MEc LINE L1 -5940 460 188 5 1134 269 304 67 19 chr11 72034673 72034777 -49809079 - PB1D10 SINE Alu -8 109 1 5 1134 297 315 81 0 chr11 72035144 72035255 -49808601 + LTR50 LTR ERVL 466 585 -210 5 1134 300 244 120 22 chr11 72035302 72035394 -49808462 - L1M LINE L1 -762 5362 5262 5 1134 826 210 34 11 chr11 72035446 72035457 -49808399 - B3A SINE B2 -16 182 172 5 1134 414 0 0 0 chr11 72035457 72035503 -49808353 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1134 826 210 34 11 chr11 72035503 72035669 -49808187 - B3A SINE B2 -27 171 1 5 1134 1256 90 32 11 chr11 72035713 72035903 -49807953 - B2_Mm2 SINE B2 0 195 2 5 1134 198 91 0 0 chr11 72036113 72036146 -49807710 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1134 288 77 0 0 chr11 72036283 72036322 -49807534 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1134 287 165 225 12 chr11 72036940 72037020 -49806836 - PB1D9 SINE Alu -5 115 19 6 1134 391 261 128 23 chr11 72037559 72037692 -49806164 + ORSL-2b DNA Tip100 1 147 -361 6 1134 190 361 24 12 chr11 72038977 72039061 -49804795 - MIRb SINE MIR -132 136 52 6 1134 181 231 18 71 chr11 72039424 72039480 -49804376 + L2c LINE L2 3296 3348 -39 6 1134 261 57 0 0 chr11 72039509 72039544 -49804312 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 6 1134 182 356 69 0 chr11 72040182 72040269 -49803587 - L2b LINE L2 -6 3369 3277 6 1134 438 192 125 0 chr11 72040915 72041019 -49802837 + PB1D7 SINE Alu 4 120 0 6 1134 416 333 55 37 chr11 72041110 72041381 -49802475 - L1M5 LINE L1 -458 5666 5391 6 1134 219 69 0 0 chr11 72042846 72042875 -49800981 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1134 206 231 0 15 chr11 72043980 72044046 -49799810 + GA-rich Low_complexity Low_complexity 4 68 0 7 1134 183 289 46 46 chr11 72044396 72044483 -49799373 - MIRb SINE MIR -116 152 66 7 1134 1635 173 15 88 chr11 72044882 72045224 -49798632 + RMER19C LTR ERVK 1 317 -294 7 1134 2725 208 34 31 chr11 72045252 72045867 -49797989 - RLTR17 LTR ERVK -73 619 3 7 1134 1742 147 82 3 chr11 72045867 72046156 -49797700 + RMER19C LTR ERVK 300 611 0 7 1134 450 0 0 0 chr11 72046327 72046377 -49797479 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1134 200 167 0 0 chr11 72046740 72046770 -49797086 + polypyrimidine Low_complexity Low_complexity 4 33 0 7 1134 210 352 34 0 chr11 72048406 72048494 -49795362 - B4A SINE B4 -172 120 30 7 1134 331 315 139 46 chr11 72048646 72048755 -49795101 - L2a LINE L2 -1 3425 3305 7 1134 353 22 0 21 chr11 72048755 72048802 -49795054 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1134 331 315 139 46 chr11 72048802 72048972 -49794884 - L2a LINE L2 -122 3304 3121 7 1134 385 306 18 9 chr11 72049020 72049132 -49794724 + MER20 DNA MER1_type 9 121 -98 7 1134 1343 39 0 0 chr11 72049436 72049592 -49794264 + L1Md_F2 LINE L1 5430 5585 -298 8 1134 7767 65 7 14 chr11 72049593 72050596 -49793260 + L1Md_F2 LINE L1 5587 6582 0 8 1134 1233 55 0 0 chr11 72050619 72050765 -49793091 + B1_Mus1 SINE Alu 1 146 -2 8 1134 558 79 0 0 chr11 72050769 72050845 -49793011 + (GA)n Simple_repeat Simple_repeat 2 77 0 8 1134 925 161 0 7 chr11 72050870 72051020 -49792836 - B1_Mur2 SINE Alu 0 149 1 8 1134 316 252 87 48 chr11 72051054 72051158 -49792698 + L1ME2 LINE L1 5315 5422 -2460 8 1134 497 16 16 0 chr11 72051219 72051281 -49792575 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 8 1134 682 289 98 16 chr11 72051589 72051955 -49791901 + L1ME2 LINE L1 5652 6051 -393 8 1134 1148 200 19 5 chr11 72052050 72052261 -49791595 - B3 SINE B2 -2 214 1 8 1134 24 53 0 0 chr11 72052266 72052304 -49791552 + AT_rich Low_complexity Low_complexity 1 38 0 8 1134 1304 103 27 0 chr11 72052449 72052633 -49791223 - B2_Mm2 SINE B2 -6 189 1 8 1134 205 207 131 24 chr11 72053876 72053960 -49789896 - MIR3 SINE MIR -29 179 87 8 1134 230 333 103 0 chr11 72054316 72054403 -49789453 + MLT1L LTR MaLR 218 313 -297 9 1134 187 363 97 0 chr11 72055328 72055452 -49788404 + MIRc SINE MIR 71 206 -62 9 1134 181 213 61 76 chr11 72057323 72057389 -49786467 - MIR3 SINE MIR -139 69 5 8 1134 691 282 117 106 chr11 72058086 72058166 -49785690 - B4A SINE B4 -5 287 223 9 1134 663 211 209 6 chr11 72058166 72058338 -49785518 - B3 SINE B2 -8 208 2 9 1134 691 282 117 106 chr11 72058338 72058531 -49785325 - B4A SINE B4 -70 222 11 9 1134 226 367 86 7 chr11 72058930 72059070 -49784786 + L2c LINE L2 3116 3266 -121 9 1134 899 173 144 11 chr11 72059500 72059687 -49784169 - B3 SINE B2 -4 212 1 9 1134 294 158 12 35 chr11 72059839 72059924 -49783932 + CT-rich Low_complexity Low_complexity 2 84 0 9 1134 213 121 0 0 chr11 72060047 72060080 -49783776 + (TTC)n Simple_repeat Simple_repeat 2 34 0 9 1134 248 288 0 91 chr11 72060803 72060891 -49782965 - PB1D10 SINE Alu 0 117 38 9 1134 225 211 0 37 chr11 72061462 72061516 -49782340 + CT-rich Low_complexity Low_complexity 3 54 0 9 1134 3248 70 2 0 chr11 72061632 72062031 -49781825 + MTB LTR MaLR 1 400 0 1 1134 245 327 10 29 chr11 72062736 72062840 -49781016 + L2c LINE L2 3281 3382 -5 1 1134 21 0 0 0 chr11 72062931 72062952 -49780904 + AT_rich Low_complexity Low_complexity 1 21 0 1 1134 231 235 0 36 chr11 72063125 72063209 -49780647 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 1 1134 424 227 16 49 chr11 72063192 72063747 -49780109 + GA-rich Low_complexity Low_complexity 1 536 0 1 1134 1197 27 7 26 chr11 72064740 72064891 -49778965 - B1_Mus1 SINE Alu 0 148 1 1 1134 484 301 0 68 chr11 72064891 72065037 -49778819 + RSINE1 SINE B4 24 159 -6 1 1134 1258 46 0 0 chr11 72065431 72065583 -49778273 + B2_Mm2 SINE B2 5 156 -39 1 1134 186 43 0 0 chr11 72065586 72065609 -49778247 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1134 230 358 92 33 chr11 72069265 72069418 -49774438 - Charlie12 DNA MER1_type -2345 528 367 1 1134 360 111 0 0 chr11 72069545 72069599 -49774257 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1134 641 226 48 8 chr11 72069600 72069725 -49774131 - RSINE1 SINE B4 -20 145 16 1 1134 207 0 0 0 chr11 72069871 72069894 -49773962 + (TGG)n Simple_repeat Simple_repeat 2 24 0 1 1134 887 126 0 8 chr11 72069894 72070022 -49773834 + B1_Mus2 SINE Alu 19 145 -2 1 1134 194 83 0 53 chr11 72070030 72070068 -49773788 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1134 477 0 0 0 chr11 72070526 72070579 -49773277 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1134 604 280 0 0 chr11 72074251 72074401 -49769455 - Lx8 LINE L1 -737 6736 6587 1 1134 359 299 142 102 chr11 72074507 72074753 -49769103 + ORR1E LTR MaLR 100 355 -4 1 1134 447 245 70 13 chr11 72075941 72076067 -49767789 - MER20 DNA MER1_type -44 175 44 1 1134 486 277 12 10 chr11 72076073 72076203 -49767653 + B1F1 SINE Alu 3 129 -20 1 1134 360 291 83 54 chr11 72076282 72076504 -49767352 + LTR48 LTR ERV1 315 619 -168 1 1134 376 324 110 0 chr11 72076621 72076757 -49767099 + MER97c DNA MER1_type? 14 164 -926 1 1134 800 265 121 19 chr11 72077101 72077366 -49766490 + B4 SINE B4 1 292 0 1 1134 423 0 0 0 chr11 72077735 72077782 -49766074 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1134 360 0 0 0 chr11 72078124 72078164 -49765692 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1134 192 40 0 0 chr11 72078472 72078497 -49765359 + (TCTCTG)n Simple_repeat Simple_repeat 4 28 0 1 1134 288 0 0 0 chr11 72081645 72081677 -49762179 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1134 890 245 5 33 chr11 72081683 72081894 -49761962 - B3 SINE B2 -9 207 3 1 1134 219 271 56 14 chr11 72082303 72082374 -49761482 - L2b LINE L2 -219 3156 3083 1 1134 387 0 0 0 chr11 72082427 72082470 -49761386 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1134 460 228 69 17 chr11 72082821 72082937 -49760919 - B4A SINE B4 -170 122 1 1 1134 600 267 25 35 chr11 72083124 72083322 -49760534 - B3A SINE B2 0 198 3 1 1134 658 263 194 18 chr11 72084039 72084322 -49759534 + L1M2 LINE L1 4705 5037 -1106 1 1134 890 160 197 0 chr11 72084325 72084513 -49759343 + URR1B DNA MER1_type 1 225 0 1 1134 245 265 60 5 chr11 72085104 72085208 -49758648 + L1M2 LINE L1 5075 5181 -962 1 1134 1027 298 65 14 chr11 72085225 72085668 -49758188 + L1MD2 LINE L1 5524 5989 -370 1 1134 297 51 0 0 chr11 72085823 72085862 -49757994 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1134 22 0 0 0 chr11 72085942 72085964 -49757892 + AT_rich Low_complexity Low_complexity 1 22 0 1 1134 357 320 26 170 chr11 72086331 72086708 -49757148 + Charlie2a DNA MER1_type 1804 2126 -735 1 1134 502 365 70 48 chr11 72086680 72086870 -49756986 - MT2A LTR ERVL -122 411 209 1 1134 180 0 0 0 chr11 72086870 72086890 -49756966 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1134 502 365 70 48 chr11 72086890 72087015 -49756841 - MT2A LTR ERVL -325 208 90 1 1134 270 330 113 0 chr11 72086966 72087072 -49756784 - MTE2a LTR MaLR -242 137 20 1 1134 322 208 139 19 chr11 72087389 72087497 -49756359 + L1M2 LINE L1 4304 4424 -1719 1 1134 325 282 122 43 chr11 72087839 72087954 -49755902 + PB1D10 SINE Alu 1 124 -3 1 1134 241 282 169 0 chr11 72087960 72088031 -49755825 + ID4_ SINE ID 1 83 0 1 1134 793 193 27 20 chr11 72088051 72088199 -49755657 + B1_Mur2 SINE Alu 1 149 0 1 1134 362 57 19 0 chr11 72088217 72088270 -49755586 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1134 1151 179 19 5 chr11 72088795 72089003 -49754853 + B3 SINE B2 1 211 -5 1 1134 735 80 0 0 chr11 72089108 72089220 -49754636 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1134 225 243 189 0 chr11 72089251 72089325 -49754531 + B1F1 SINE Alu 6 93 -56 1 1134 233 212 18 12 chr11 72089339 72089397 -49754459 + B1F2 SINE Alu 2 60 -88 1 1134 264 0 0 159 chr11 72089398 72089530 -49754326 + (CAGAG)n Simple_repeat Simple_repeat 5 115 0 1 141 376 162 0 68 chr11 72089533 72089606 -49754250 + ID_B1 SINE B4 123 190 -34 1 1135 246 187 0 185 chr11 72089606 72089625 -49754231 + PB1D10 SINE Alu 42 116 -1 1 1135 2938 54 7 81 chr11 72090105 72090526 -49753330 + RLTR10 LTR ERVK 1 390 0 1 1135 8191 38 0 1 chr11 72090535 72091485 -49752371 + RLTR10-int LTR ERVK 40 988 -999 1 1135 9025 17 1 0 chr11 72091565 72092559 -49751297 + RLTR10-int LTR ERVK 992 1986 -1 1 1135 2938 54 7 81 chr11 72092559 72092980 -49750876 + RLTR10 LTR ERVK 1 390 0 1 1135 308 356 28 63 chr11 72093533 72093785 -49750071 + L1ME3B LINE L1 5816 6058 -182 1 1135 531 158 49 0 chr11 72094522 72094604 -49749252 + 5S rRNA rRNA 6 91 -30 1 1135 406 198 26 122 chr11 72094604 72094637 -49749219 + AmnSINE1 SINE SINE 6 109 -466 1 1135 531 308 69 54 chr11 72094887 72095237 -49748619 - HAL1 LINE L1 -436 2071 1717 1 1135 459 300 15 157 chr11 72096022 72096283 -49747573 - ID_B1 SINE B4 0 224 1 1 1135 1097 82 0 39 chr11 72096309 72096462 -49747394 - B1_Mus1 SINE Alu -1 147 1 1 1135 432 0 0 0 chr11 72097338 72097386 -49746470 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1135 333 0 0 0 chr11 72097782 72097819 -49746037 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 1135 441 316 119 70 chr11 72098585 72098871 -49744985 - ORR1E LTR MaLR -57 302 3 1 1135 533 361 101 64 chr11 72099892 72099944 -49743912 - RMER13A LTR ERVK -126 782 730 1 1135 1222 96 73 0 chr11 72099944 72100122 -49743734 + B2_Mm2 SINE B2 3 193 -2 1 1135 533 361 101 64 chr11 72100122 72100246 -49743610 - RMER13A LTR ERVK -179 729 610 1 1135 2158 127 35 22 chr11 72100246 72100616 -49743240 + Lx3B LINE L1 6599 6973 0 1 1135 831 288 128 64 chr11 72100616 72101171 -49742685 - RMER13A LTR ERVK -299 609 1 1 1135 551 301 46 41 chr11 72101280 72101474 -49742382 + MIRb SINE MIR 43 237 -31 1 1135 1239 249 48 68 chr11 72101772 72102168 -49741688 - RMER5 LTR ERV1 -52 482 95 1 1135 351 0 0 0 chr11 72102272 72102311 -49741545 + (CCA)n Simple_repeat Simple_repeat 3 41 0 1 1135 257 191 0 31 chr11 72102705 72102770 -49741086 + (CTATG)n Simple_repeat Simple_repeat 3 65 0 1 1135 817 214 243 79 chr11 72103155 72103460 -49740396 + MTEb LTR MaLR 22 376 -3 1 1135 2906 116 29 11 chr11 72103460 72103905 -49739951 - RLTR11B LTR ERVK 0 453 1 1 1135 2970 200 50 24 chr11 72103906 72104573 -49739283 - MYSERV-int LTR ERVK -2 6548 5865 1 1135 2265 231 122 157 chr11 72104554 72104800 -49739056 - MYSERV16_I-int LTR ERVK -790 1536 1307 1 1135 1163 88 0 0 chr11 72104800 72104948 -49738908 - B1_Mus1 SINE Alu 0 148 1 1 1135 2265 231 122 157 chr11 72104948 72105390 -49738466 - MYSERV16_I-int LTR ERVK -1020 1306 449 1 1135 2788 75 146 120 chr11 72105390 72105889 -49737967 - RLTR1B LTR ERV1 0 512 1 1 1135 2265 231 122 157 chr11 72105889 72106578 -49737278 - MYSERV16_I-int LTR ERVK -1425 901 207 1 1135 3232 321 39 52 chr11 72106650 72107188 -49736668 - MYSERV6-int LTR ERVK -6485 2474 1966 1 1135 1216 61 0 0 chr11 72107188 72107335 -49736521 + B1_Mm SINE Alu 1 147 0 1 1135 3232 321 39 52 chr11 72107335 72107406 -49736450 - MYSERV6-int LTR ERVK -6994 1965 1875 1 1135 2618 151 102 4 chr11 72107406 72107885 -49735971 + RLTR11A LTR ERVK 3 528 0 1 1135 3232 321 39 52 chr11 72107885 72108066 -49735790 - MYSERV6-int LTR ERVK -7085 1874 1693 1 1135 180 0 0 0 chr11 72108066 72108086 -49735770 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1135 1216 49 0 0 chr11 72108086 72108230 -49735626 - B1_Mus2 SINE Alu -2 145 2 1 1135 3232 321 39 52 chr11 72108230 72109408 -49734448 - MYSERV6-int LTR ERVK -7267 1692 530 1 1135 316 102 0 0 chr11 72109496 72109545 -49734311 + RLTR11B LTR ERVK 402 450 -3 1 1135 1332 80 27 0 chr11 72109947 72110134 -49733722 - RLTR11B LTR ERVK 0 453 262 1 1135 1674 223 94 54 chr11 72110146 72110648 -49733208 - RLTR11A LTR ERVK 0 528 7 1 1135 1599 115 12 19 chr11 72110655 72110912 -49732944 - RLTR11B LTR ERVK -198 255 1 1 1135 395 350 0 34 chr11 72110937 72111085 -49732771 + ID_B1 SINE B4 82 224 0 1 1135 502 207 143 0 chr11 72111510 72111650 -49732206 + MTEa LTR MaLR 28 187 -192 1 1135 1652 42 0 0 chr11 72111650 72111842 -49732014 + B2_Mm1a SINE B2 2 193 0 1 1135 1458 34 73 0 chr11 72111889 72112048 -49731808 + B2_Mm1a SINE B2 2 160 -33 1 1135 315 0 0 0 chr11 72112048 72112083 -49731773 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1135 1458 34 73 0 chr11 72112083 72112102 -49731754 + B2_Mm1a SINE B2 161 192 -1 1 1135 674 224 108 16 chr11 72112104 72112290 -49731566 + MTEa LTR MaLR 168 370 -9 1 1135 678 300 108 36 chr11 72112294 72112543 -49731313 - ORR1E LTR MaLR -83 276 10 1 1135 246 62 0 0 chr11 72112679 72112711 -49731145 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1135 3378 37 2 121 chr11 72112711 72113206 -49730650 - RLTR10C LTR ERVK 0 436 1 1 1135 311 273 0 61 chr11 72113207 72113289 -49730567 - ID4 SINE ID -63 89 13 1 1135 691 227 8 0 chr11 72113420 72113539 -49730317 - RSINE1 SINE B4 -31 134 15 1 1135 570 15 0 0 chr11 72113853 72113920 -49729936 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1135 256 229 0 0 chr11 72116356 72116404 -49727452 - PB1D10 SINE Alu -8 109 62 1 1135 298 325 43 9 chr11 72117572 72117687 -49726169 - RMER12 LTR ERVK -477 845 727 1 1135 1675 206 116 3 chr11 72117677 72118047 -49725809 + MTD LTR MaLR 8 419 0 1 1135 261 0 0 0 chr11 72118781 72118810 -49725046 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1135 1008 253 60 51 chr11 72118811 72119127 -49724729 - ORR1E LTR MaLR -40 319 1 1 1135 358 202 28 19 chr11 72119195 72119301 -49724555 + CT-rich Low_complexity Low_complexity 1 107 0 2 1135 183 129 0 0 chr11 72120683 72120714 -49723142 + (CCCA)n Simple_repeat Simple_repeat 1 31 0 2 1135 311 188 8 19 chr11 72120715 72120784 -49723072 + B1_Mus1 SINE Alu 15 80 -69 2 1135 204 135 0 0 chr11 72120830 72120867 -49722989 + (CAAG)n Simple_repeat Simple_repeat 4 40 0 2 1135 407 276 33 7 chr11 72121060 72121208 -49722648 - MLT1A1 LTR MaLR -8 400 204 2 1135 803 161 0 0 chr11 72121365 72121489 -49722367 - B1_Mur3 SINE Alu -12 137 14 2 1135 838 219 53 38 chr11 72121502 72121711 -49722145 - B3 SINE B2 -4 212 1 2 1135 426 20 0 0 chr11 72121836 72121887 -49721969 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1135 424 271 0 0 chr11 72121914 72121999 -49721857 - RSINE1 SINE B4 -77 88 4 2 1135 265 141 51 0 chr11 72122851 72122929 -49720927 + (GTTTG)n Simple_repeat Simple_repeat 5 86 0 2 1135 737 212 7 27 chr11 72122938 72123088 -49720768 - B1_Mus1 SINE Alu 0 148 2 2 1135 1438 201 141 15 chr11 72123144 72123477 -49720379 - MTD LTR MaLR -44 375 1 2 1135 805 295 17 69 chr11 72123538 72123829 -49720027 + B4 SINE B4 1 276 -16 2 1135 434 213 96 0 chr11 72123882 72123976 -49719880 + B1F1 SINE Alu 40 142 -7 2 1135 210 37 0 0 chr11 72123982 72124009 -49719847 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1135 393 289 8 34 chr11 72124408 72124526 -49719330 + MER53 DNA hAT 6 120 -73 2 1135 1690 31 0 0 chr11 72125497 72125690 -49718166 + B2_Mm1a SINE B2 1 193 0 2 1135 543 237 71 113 chr11 72126148 72126386 -49717470 - Lx8 LINE L1 -350 7123 6896 2 1135 344 208 8 32 chr11 72126649 72126773 -49717083 + GA-rich Low_complexity Low_complexity 3 123 0 2 1135 1234 212 148 24 chr11 72126886 72127258 -49716598 + RMER5 LTR ERV1 114 531 -3 2 1135 180 344 46 39 chr11 72128182 72128312 -49715544 + MIRb SINE MIR 21 151 -117 2 1135 197 243 108 0 chr11 72128422 72128496 -49715360 - MIR SINE MIR -71 191 110 2 1135 304 260 0 14 chr11 72128616 72128690 -49715166 + B4 SINE B4 11 83 -209 2 1135 393 266 43 0 chr11 72128935 72129029 -49714827 - ID_B1 SINE B4 -125 99 2 2 1135 403 273 15 118 chr11 72129246 72129441 -49714415 + L2c LINE L2 3032 3206 -181 2 1135 22 0 0 0 chr11 72129521 72129543 -49714313 + AT_rich Low_complexity Low_complexity 1 22 0 2 1135 330 303 6 134 chr11 72129547 72129559 -49714297 - ID_B1 SINE B4 0 224 213 2 1135 1280 20 0 7 chr11 72129559 72129707 -49714149 - B1_Mm SINE Alu 0 147 1 2 1135 1289 57 56 17 chr11 72129713 72129891 -49713965 - B2_Mm2 SINE B2 -9 186 2 2 1135 427 262 7 106 chr11 72129891 72130012 -49713844 - B1F SINE Alu -16 133 24 2 1135 330 303 6 134 chr11 72130012 72130050 -49713806 - ID_B1 SINE B4 -16 208 70 2 1135 188 341 52 60 chr11 72130063 72130197 -49713659 + L2c LINE L2 3239 3371 -4 2 1135 420 20 0 0 chr11 72131515 72131564 -49712292 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1135 248 164 145 40 chr11 72132236 72132312 -49711544 + MER2 DNA MER2_type 87 170 -175 2 1135 437 264 0 32 chr11 72132340 72132434 -49711422 + MER2 DNA MER2_type 249 339 -6 2 1135 347 0 23 0 chr11 72132525 72132568 -49711288 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1135 249 57 0 0 chr11 72132983 72133018 -49710838 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1135 1458 79 16 0 chr11 72133163 72133352 -49710504 + B2_Mm2 SINE B2 1 192 -3 2 1135 1009 96 7 0 chr11 72133366 72133501 -49710355 + B1_Mus1 SINE Alu 13 148 0 2 1135 2808 102 32 7 chr11 72134599 72135002 -49708854 + MTC LTR MaLR 1 413 -8 2 1135 1189 265 39 70 chr11 72135007 72135486 -49708370 - L1_Rod LINE L1 -393 5781 5297 2 1135 1325 80 10 26 chr11 72135674 72135867 -49707989 - B2_Mm1t SINE B2 -1 192 3 2 1135 1494 130 14 0 chr11 72136215 72136438 -49707418 - URR1A DNA MER1_type 0 226 1 2 1135 504 315 111 21 chr11 72136519 72136762 -49707094 - Charlie1b DNA MER1_type -258 265 1 2 1135 280 346 35 49 chr11 72137085 72137228 -49706628 + MIR3 SINE MIR 36 176 -32 2 1135 257 311 107 25 chr11 72137425 72137547 -49706309 - MIRc SINE MIR -118 150 19 2 1135 901 223 0 79 chr11 72137965 72138194 -49705662 + B3 SINE B2 2 212 -4 2 1135 346 259 12 0 chr11 72138491 72138572 -49705284 + ID4 SINE ID 2 83 0 2 1135 429 211 43 10 chr11 72138586 72138699 -49705157 + B1F SINE Alu 3 117 0 2 1135 192 231 152 71 chr11 72138979 72139091 -49704765 - L3 LINE CR1 -268 4221 4101 2 1135 524 275 58 5 chr11 72139115 72139305 -49704551 - L1MA5 LINE L1 -223 6077 5878 2 1135 1897 107 24 72 chr11 72139306 72139640 -49704216 + ORR1A4 LTR MaLR 1 318 -11 2 1135 4427 20 2 0 chr11 72140039 72140531 -49703325 + MT2_Mm LTR ERVL 1 493 0 2 1135 48395 14 8 0 chr11 72140531 72145849 -49698007 + MERVL-int LTR ERVL 1 5360 -125 2 1135 403 167 46 35 chr11 72145849 72145936 -49697920 + ORR1A4-int LTR MaLR 553 640 -1323 2 1135 319 0 0 0 chr11 72145936 72145974 -49697882 + MERVL-int LTR ERVL 5448 5485 0 2 1135 4427 20 2 0 chr11 72145974 72146466 -49697390 + MT2_Mm LTR ERVL 1 493 0 2 1135 459 0 0 0 chr11 72146704 72146755 -49697101 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1135 214 85 16 63 chr11 72147497 72147560 -49696296 + (TTA)n Simple_repeat Simple_repeat 2 61 0 2 1135 2036 274 163 7 chr11 72148377 72149127 -49694729 + Lx8 LINE L1 6579 7445 -28 2 1135 387 305 0 89 chr11 72149127 72149307 -49694549 + RSINE1 SINE B4 2 165 0 2 1135 443 153 15 37 chr11 72149309 72149445 -49694411 + (CA)n Simple_repeat Simple_repeat 1 133 0 2 1135 192 231 9 19 chr11 72151563 72151617 -49692239 + MIRm SINE MIR 112 168 -100 2 1135 865 166 14 7 chr11 72152953 72153099 -49690757 + B1_Mur4 SINE Alu 1 147 -3 2 1135 3153 130 174 5 chr11 72153256 72153836 -49690020 + RLTR33 LTR ERVK 1 678 0 2 1135 653 177 201 44 chr11 72153872 72154086 -49689770 + 7SK RNA RNA 7 254 -77 2 1135 294 97 174 16 chr11 72154360 72154435 -49689421 + B1_Mur4 SINE Alu 63 148 -2 2 1135 308 319 102 61 chr11 72154453 72154598 -49689258 - MLT1A0 LTR MaLR -55 310 155 2 1135 1449 75 5 0 chr11 72154598 72154784 -49689072 - B2_Mm1t SINE B2 -6 187 1 2 1135 308 321 97 68 chr11 72154784 72154872 -49688984 - MLT1A0 LTR MaLR -209 165 85 2 1135 327 49 0 0 chr11 72154932 72154973 -49688883 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1135 426 135 94 2 chr11 72155083 72155173 -49688683 - B1F SINE Alu 0 147 55 2 1135 277 149 66 30 chr11 72155529 72155597 -49688259 - MIRc SINE MIR -108 160 87 2 1135 203 237 51 0 chr11 72156074 72156133 -49687723 - MIR3 SINE MIR -17 191 130 2 1135 180 282 0 0 chr11 72156157 72156196 -49687660 - MIR SINE MIR -135 73 35 2 1135 570 269 75 82 chr11 72156626 72156683 -49687173 - B4 SINE B4 -15 277 229 2 1135 1571 37 16 16 chr11 72156683 72156876 -49686980 - B2_Mm2 SINE B2 0 195 3 2 1135 570 269 75 82 chr11 72156876 72157097 -49686759 - B4 SINE B4 -64 228 1 2 1135 585 198 112 32 chr11 72157187 72157312 -49686544 - RSINE1 SINE B4 -23 142 8 2 1135 360 286 109 0 chr11 72158645 72158764 -49685092 + B1F1 SINE Alu 9 140 -9 2 1135 379 274 0 12 chr11 72158768 72158853 -49685003 + BC1_Mm scRNA scRNA 2 85 -67 2 1135 927 255 127 28 chr11 72159564 72159887 -49683969 + ORR1E LTR MaLR 5 359 0 2 1135 342 0 0 0 chr11 72159983 72160021 -49683835 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1135 400 264 45 45 chr11 72160128 72160239 -49683617 - B4 SINE B4 -8 284 174 2 1135 508 170 34 59 chr11 72160406 72160525 -49683331 - B3A SINE B2 -80 118 3 2 1135 1129 124 85 0 chr11 72160571 72160748 -49683108 + B2_Mm2 SINE B2 2 193 -2 2 1135 261 232 24 24 chr11 72160884 72160968 -49682888 + L1MC5 LINE L1 7696 7779 -182 2 1135 240 128 0 20 chr11 72160976 72161016 -49682840 + B1_Mur4 SINE Alu 1 37 -113 2 1135 854 154 0 0 chr11 72161015 72161145 -49682711 - B1_Mur4 SINE Alu -15 135 6 2 1135 325 288 42 59 chr11 72161040 72161158 -49682698 - B4 SINE B4 -94 198 83 2 1135 972 141 169 15 chr11 72161221 72161416 -49682440 - URR1B DNA MER1_type 0 225 1 2 1135 1017 262 29 36 chr11 72161459 72161736 -49682120 + B4A SINE B4 15 289 -3 2 1135 516 239 154 0 chr11 72161735 72161865 -49681991 + Cheshire DNA MER1_type 1134 1283 -1137 2 1135 625 221 107 73 chr11 72161865 72162099 -49681757 + B4A SINE B4 7 248 -44 2 1135 1770 311 126 33 chr11 72162195 72162986 -49680870 + Cheshire DNA MER1_type 1385 2269 -151 2 1135 222 37 0 0 chr11 72162986 72163013 -49680843 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2 1135 1770 311 126 33 chr11 72163013 72163169 -49680687 + Cheshire DNA MER1_type 2270 2419 -1 2 1135 817 186 21 0 chr11 72163581 72163721 -49680135 - B1_Mur1 SINE Alu 0 149 7 2 1135 201 234 0 0 chr11 72163815 72163879 -49679977 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1135 755 275 20 83 chr11 72163910 72164211 -49679645 - B4A SINE B4 -10 282 1 2 1135 235 248 117 19 chr11 72164251 72164354 -49679502 + MER33 DNA MER1_type 160 272 -52 2 1135 483 167 57 29 chr11 72164382 72164487 -49679369 + B1_Mur3 SINE Alu 34 141 -8 2 1135 198 222 0 0 chr11 72164487 72164541 -49679315 + GA-rich Low_complexity Low_complexity 1 54 0 2 1135 243 322 94 5 chr11 72164640 72164771 -49679085 - MIRc SINE MIR -109 159 23 2 1135 376 315 72 67 chr11 72164856 72165036 -49678820 + MER63A DNA AcHobo 5 185 -25 2 1135 351 329 79 0 chr11 72165713 72165853 -49678003 - MIRb SINE MIR -34 234 84 2 1135 1783 115 13 80 chr11 72165967 72166125 -49677731 + ORR1B1 LTR MaLR 1 138 -256 2 1135 1292 76 43 16 chr11 72166125 72166312 -49677544 - B2_Mm2 SINE B2 -2 193 2 2 1135 1783 115 13 80 chr11 72166312 72166465 -49677391 + ORR1B1 LTR MaLR 139 291 -103 2 1135 525 340 126 30 chr11 72166692 72167065 -49676791 + MLT1F2 LTR MaLR 127 535 -25 2 1135 676 246 111 6 chr11 72167104 72167284 -49676572 + B3 SINE B2 8 206 -10 2 1135 21 57 0 0 chr11 72167352 72167387 -49676469 + AT_rich Low_complexity Low_complexity 1 35 0 2 1135 489 300 25 0 chr11 72167425 72167585 -49676271 + RSINE1 SINE B4 2 165 0 3 1135 26 30 0 0 chr11 72167585 72167618 -49676238 + AT_rich Low_complexity Low_complexity 1 33 0 3 1135 922 133 24 54 chr11 72167621 72167788 -49676068 + B2_Mm2 SINE B2 11 172 -23 3 1135 198 0 0 0 chr11 72169233 72169255 -49674601 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 3 1135 993 31 62 0 chr11 72169290 72169419 -49674437 - B1_Mm SINE Alu -1 146 10 3 1135 539 263 63 139 chr11 72169291 72169529 -49674327 - B4 SINE B4 -69 223 4 3 1135 244 264 0 0 chr11 72169542 72169595 -49674261 - MIR SINE MIR -70 138 86 3 1135 252 253 94 10 chr11 72169715 72169811 -49674045 + MIR SINE MIR 69 172 -90 3 1135 306 0 0 0 chr11 72169840 72169874 -49673982 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1135 517 121 20 20 chr11 72169996 72170097 -49673759 + G-rich Low_complexity Low_complexity 2 102 0 3 1135 484 247 96 39 chr11 72170198 72170354 -49673502 + MLT1J LTR MaLR 25 189 -323 3 1135 293 309 111 92 chr11 72170373 72170526 -49673330 + MLT1J LTR MaLR 249 404 -108 3 1135 1049 184 43 5 chr11 72170542 72170750 -49673106 + B3 SINE B2 1 216 0 3 1135 399 21 0 0 chr11 72171201 72171249 -49672607 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1135 423 0 0 0 chr11 72171382 72171429 -49672427 + (CCA)n Simple_repeat Simple_repeat 1 47 0 3 1135 715 158 66 22 chr11 72171431 72171567 -49672289 - B1_Mur2 SINE Alu -6 143 2 3 1135 991 218 43 14 chr11 72171600 72171756 -49672100 + ID_B1 SINE B4 2 163 -61 3 1135 438 20 0 0 chr11 72171756 72171807 -49672049 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1135 991 218 43 14 chr11 72171807 72171859 -49671997 + ID_B1 SINE B4 164 215 -9 3 1135 240 59 0 0 chr11 72171859 72171893 -49671963 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1135 453 81 0 0 chr11 72171893 72171954 -49671902 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1135 508 271 85 40 chr11 72171954 72171978 -49671878 + B4A SINE B4 220 245 -47 3 1135 327 317 18 96 chr11 72172010 72172282 -49671574 - L1M5 LINE L1 -1499 4647 4397 3 1135 539 267 0 25 chr11 72172411 72172530 -49671326 - RSINE1 SINE B4 -1 164 49 3 1135 257 296 0 27 chr11 72172579 72172652 -49671204 - B4A SINE B4 -56 236 166 3 1135 345 167 139 0 chr11 72172589 72172661 -49671195 - B1_Mus2 SINE Alu 0 147 66 3 1135 398 335 157 15 chr11 72173447 72173839 -49670017 - L1ME3B LINE L1 -15 6158 5713 3 1135 2241 149 40 59 chr11 72173911 72174106 -49669750 + MTC LTR MaLR 1 206 -215 3 1135 885 153 27 14 chr11 72174106 72174252 -49669604 + B1_Mus1 SINE Alu 1 148 0 3 1135 708 74 0 0 chr11 72174256 72174351 -49669505 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 3 1135 1030 85 0 33 chr11 72174361 72174543 -49669313 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 3 1135 2241 149 40 59 chr11 72174543 72174752 -49669104 + MTC LTR MaLR 207 413 -8 3 1135 193 0 61 30 chr11 72175981 72176014 -49667842 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1135 1109 134 0 35 chr11 72176140 72176341 -49667515 + B2_Mm2 SINE B2 2 195 0 3 1135 309 51 0 0 chr11 72176346 72176385 -49667471 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 3 1135 1149 63 7 0 chr11 72176532 72176674 -49667182 - B1_Mus1 SINE Alu -5 143 1 3 1135 279 136 0 0 chr11 72176774 72176818 -49667038 + RSINE1 SINE B4 86 129 -36 3 1135 306 0 0 0 chr11 72176820 72176854 -49667002 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1135 186 103 0 0 chr11 72176893 72176922 -49666934 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 1135 293 272 65 11 chr11 72177132 72177225 -49666631 + MER5A DNA MER1_type 53 150 -39 3 1135 693 319 29 5 chr11 72177723 72177928 -49665928 + B4A SINE B4 6 215 -77 3 1135 1350 58 17 6 chr11 72178852 72178867 -49664989 - B2_Mm2 SINE B2 -19 176 159 3 1135 180 0 0 0 chr11 72178867 72178887 -49664969 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1135 1350 58 17 6 chr11 72178887 72179045 -49664811 - B2_Mm2 SINE B2 -37 158 1 3 1135 409 156 236 2 chr11 72179556 72179646 -49664210 + B3 SINE B2 1 108 -85 3 1135 336 49 0 0 chr11 72179878 72179919 -49663937 - B4A SINE B4 -67 225 185 3 1135 460 171 0 139 chr11 72180010 72180132 -49663724 + MT2B LTR ERVL 160 264 -337 3 1135 858 147 16 0 chr11 72180025 72180154 -49663702 + B1_Mus1 SINE Alu 7 137 -11 3 1135 215 182 29 29 chr11 72180260 72180328 -49663528 + (TTAA)n Simple_repeat Simple_repeat 4 71 0 3 1135 180 0 0 0 chr11 72180467 72180487 -49663369 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1135 869 169 13 20 chr11 72180527 72180678 -49663178 - B1_Mur4 SINE Alu 0 150 1 3 1135 903 212 0 98 chr11 72180684 72180898 -49662958 - B3A SINE B2 -4 194 2 3 1135 654 248 0 32 chr11 72180907 72181061 -49662795 - B1F2 SINE Alu 0 149 1 3 1135 507 239 35 9 chr11 72182404 72182518 -49661338 + B1F SINE Alu 27 143 -6 3 1135 282 125 0 0 chr11 72182542 72182590 -49661266 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 1135 504 77 0 0 chr11 72182597 72182675 -49661181 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1135 329 332 215 25 chr11 72182681 72183002 -49660854 - MER34A LTR ERV1 -159 412 31 3 1135 326 265 63 42 chr11 72184022 72184164 -49659692 - MIR SINE MIR -66 196 52 3 1135 731 272 55 6 chr11 72184174 72184337 -49659519 + B3A SINE B2 1 171 -27 3 1135 22 0 0 0 chr11 72184370 72184392 -49659464 + AT_rich Low_complexity Low_complexity 1 22 0 3 1135 751 182 38 0 chr11 72184404 72184536 -49659320 + B1_Mm SINE Alu 1 137 -10 3 1135 200 284 160 13 chr11 72185053 72185128 -49658728 - MIR SINE MIR -34 228 143 3 1135 820 221 128 0 chr11 72185409 72185644 -49658212 + Lx9 LINE L1 7377 7641 -3 3 1135 222 37 0 0 chr11 72185644 72185671 -49658185 + (GGA)n Simple_repeat Simple_repeat 3 29 0 3 1135 240 247 40 79 chr11 72185721 72185822 -49658034 + MTEb LTR MaLR 69 165 -194 3 1135 789 28 28 0 chr11 72185822 72185930 -49657926 + (TC)n Simple_repeat Simple_repeat 1 111 0 3 1135 288 280 20 20 chr11 72186059 72186161 -49657695 + MTEb LTR MaLR 278 379 0 3 1135 815 248 98 90 chr11 72186484 72186861 -49656995 - RLTR14 LTR ERV1 0 382 3 3 1135 221 0 35 0 chr11 72186874 72186903 -49656953 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1135 232 308 104 60 chr11 72186917 72187131 -49656725 + HAL1 LINE L1 1331 1559 -948 3 1135 4348 70 136 18 chr11 72187131 72187802 -49656054 - RMER17A LTR ERVK 0 751 2 3 1135 232 308 104 60 chr11 72187802 72187856 -49656000 + HAL1 LINE L1 1560 1611 -896 3 1135 711 240 14 94 chr11 72187942 72188154 -49655702 + B3A SINE B2 1 195 -3 3 1135 412 323 105 44 chr11 72188507 72188850 -49655006 - L2 LINE L2 -390 3029 2666 3 1135 2894 84 13 198 chr11 72188870 72189507 -49654349 - MURVY-LTR LTR ERV1 0 519 1 3 1135 291 371 70 48 chr11 72189825 72190012 -49653844 - MLT1G LTR MaLR -197 394 204 3 1135 235 167 0 20 chr11 72190170 72190219 -49653637 - L2 LINE L2 -927 2492 2445 3 1135 471 344 136 21 chr11 72190225 72190555 -49653301 + HAL1 LINE L1 2134 2501 -6 3 1135 1107 88 0 7 chr11 72190564 72190712 -49653144 + B1_Mus1 SINE Alu 1 147 -1 3 1135 931 172 128 5 chr11 72190738 72190925 -49652931 - B3 SINE B2 -6 210 1 3 1135 1355 85 17 0 chr11 72191405 72191581 -49652275 + B2_Mm2 SINE B2 2 180 -15 3 1135 450 0 0 0 chr11 72191581 72191631 -49652225 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1135 964 236 21 5 chr11 72192550 72192742 -49651114 + B3 SINE B2 1 195 -21 3 1135 539 140 20 0 chr11 72192750 72192850 -49651006 + GA-rich Low_complexity Low_complexity 2 103 0 3 1135 598 271 14 0 chr11 72193456 72193596 -49650260 + RSINE1 SINE B4 8 149 -16 3 1135 261 0 0 0 chr11 72193599 72193628 -49650228 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1135 360 64 0 0 chr11 72193631 72193678 -49650178 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 3 1135 554 239 174 0 chr11 72193688 72193826 -49650030 + RSINE1 SINE B4 2 163 -2 3 1135 258 33 0 0 chr11 72193861 72193891 -49649965 - U6 snRNA snRNA -77 30 1 3 1135 1032 166 126 0 chr11 72193911 72194086 -49649770 - B3 SINE B2 -19 197 1 3 1135 773 199 50 0 chr11 72194091 72194232 -49649624 - B1_Mur2 SINE Alu 0 149 2 3 1135 343 265 27 114 chr11 72194101 72194250 -49649606 - MT2B LTR ERVL -313 288 153 3 1135 607 270 0 21 chr11 72194619 72194759 -49649097 + RSINE1 SINE B4 14 150 -15 3 1135 23 33 0 0 chr11 72194767 72194797 -49649059 + AT_rich Low_complexity Low_complexity 1 30 0 3 1135 956 237 162 32 chr11 72194918 72195055 -49648801 - MTD LTR MaLR 0 419 275 3 1135 423 0 0 0 chr11 72195055 72195102 -49648754 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1135 956 237 162 32 chr11 72195102 72195247 -49648609 - MTD LTR MaLR -145 274 101 3 1135 303 71 0 0 chr11 72195247 72195289 -49648567 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1135 956 237 162 32 chr11 72195289 72195376 -49648480 - MTD LTR MaLR -319 100 2 3 1135 1734 158 29 10 chr11 72195516 72195823 -49648033 + RMER10B LTR ERVL 1 313 -85 3 1135 674 144 146 0 chr11 72195844 72196001 -49647855 - B3 SINE B2 0 198 11 3 1135 269 275 62 0 chr11 72196044 72196124 -49647732 + L1MC4 LINE L1 5510 5594 -2288 3 1135 949 191 121 5 chr11 72196233 72196423 -49647433 + B3 SINE B2 1 212 -4 3 1135 231 193 17 50 chr11 72196527 72196587 -49647269 + MTE2a LTR MaLR 278 335 -44 3 1135 392 241 161 161 chr11 72196622 72196815 -49647041 + B3A SINE B2 1 193 -5 3 1135 886 302 44 41 chr11 72196820 72197138 -49646718 - MER2 DNA MER2_type 0 345 27 3 1135 811 53 0 50 chr11 72197187 72197326 -49646530 + (GAAA)n Simple_repeat Simple_repeat 4 135 0 3 1135 500 259 27 34 chr11 72197652 72197800 -49646056 + B1F SINE Alu 1 147 -2 3 1135 551 248 71 8 chr11 72197807 72197933 -49645923 + RSINE1 SINE B4 6 139 -26 3 1135 201 298 0 0 chr11 72197952 72197999 -49645857 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 3 1135 514 261 158 12 chr11 72198180 72198421 -49645435 + L1MC4 LINE L1 6778 7053 -989 3 1135 386 325 51 25 chr11 72198421 72198579 -49645277 + RSINE1 SINE B4 2 163 -2 4 1135 423 134 317 0 chr11 72198936 72199018 -49644838 + PB1D9 SINE Alu 6 113 -7 4 1135 232 143 0 0 chr11 72199160 72199195 -49644661 + B3A SINE B2 2 36 -162 4 1135 680 171 9 0 chr11 72199225 72199336 -49644520 - RSINE1 SINE B4 -39 126 15 4 1135 568 233 81 14 chr11 72199407 72199516 -49644340 + B3 SINE B2 59 169 -47 4 1135 239 54 27 0 chr11 72199516 72199553 -49644303 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1135 568 233 81 14 chr11 72199553 72199591 -49644265 + B3 SINE B2 170 215 -1 4 1135 494 307 87 32 chr11 72199614 72199719 -49644137 + B3A SINE B2 1 113 -85 4 1135 1226 48 0 0 chr11 72199719 72199864 -49643992 + B1_Mm SINE Alu 3 147 0 4 1135 266 67 0 22 chr11 72199867 72199913 -49643943 + (CAA)n Simple_repeat Simple_repeat 2 46 0 4 1135 494 307 87 32 chr11 72199913 72199988 -49643868 + B3A SINE B2 114 195 -3 4 1135 470 61 15 0 chr11 72200073 72200139 -49643717 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1135 679 224 0 0 chr11 72200675 72200800 -49643056 + RSINE1 SINE B4 2 126 -39 4 1135 678 208 65 7 chr11 72201198 72201377 -49642479 - B3 SINE B2 -9 186 1 4 1135 328 292 57 0 chr11 72202559 72202665 -49641191 - PB1D7 SINE Alu -6 114 3 4 1135 234 264 28 0 chr11 72203462 72203534 -49640322 + ID4 SINE ID 1 74 -9 4 1135 1213 56 0 0 chr11 72204223 72204367 -49639489 + B1_Mus1 SINE Alu 5 148 0 4 1135 731 141 26 15 chr11 72205264 72205408 -49638448 - B1_Mur4 SINE Alu 0 149 1 4 1135 412 325 0 8 chr11 72205410 72205528 -49638328 - PB1D10 SINE Alu 0 117 1 4 1135 506 272 104 35 chr11 72205573 72205775 -49638081 + B3 SINE B2 1 216 0 4 1135 691 234 21 0 chr11 72205794 72205939 -49637917 + B1_Mus1 SINE Alu 1 148 0 4 1135 541 242 53 144 chr11 72205974 72206162 -49637694 + B4 SINE B4 2 172 -120 4 1135 228 328 0 0 chr11 72206273 72206337 -49637519 + MER2B DNA MER2_type 3 66 -270 4 1135 294 225 0 130 chr11 72206340 72206432 -49637424 + B3A SINE B2 119 198 0 4 1135 429 20 0 0 chr11 72206439 72206489 -49637367 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1135 937 268 38 72 chr11 72206522 72206607 -49637249 + B4A SINE B4 5 96 -196 4 1135 991 130 14 0 chr11 72206607 72206753 -49637103 + B1_Mur3 SINE Alu 2 149 0 4 1135 937 268 38 72 chr11 72206753 72206957 -49636899 + B4A SINE B4 97 284 -8 4 1135 405 0 0 0 chr11 72207723 72207768 -49636088 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1135 181 314 0 0 chr11 72207921 72207972 -49635884 - L3 LINE CR1 -2 4487 4437 4 1135 294 317 106 89 chr11 72211326 72211572 -49632284 + LTR33 LTR ERVL 48 297 -218 4 1135 953 211 38 42 chr11 72211819 72212032 -49631824 + MTEb LTR MaLR 5 216 -163 4 1135 277 159 32 0 chr11 72212032 72212095 -49631761 + CT-rich Low_complexity Low_complexity 5 69 0 4 1135 232 214 100 0 chr11 72212095 72212165 -49631691 + MTEb LTR MaLR 195 271 -108 4 1135 456 72 0 0 chr11 72212173 72212242 -49631614 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1135 326 188 14 28 chr11 72212249 72212320 -49631536 + MTEb LTR MaLR 310 379 0 4 1135 497 307 40 100 chr11 72212523 72212920 -49630936 + MLT1A1 LTR MaLR 1 348 -17 4 1135 279 317 84 28 chr11 72213163 72213270 -49630586 + MIR3 SINE MIR 64 176 -32 4 1135 25 0 0 0 chr11 72215454 72215479 -49628377 + AT_rich Low_complexity Low_complexity 1 25 0 4 1135 968 161 0 7 chr11 72217088 72217238 -49626618 - B1_Mur2 SINE Alu 0 149 1 4 1135 647 57 0 11 chr11 72219024 72219113 -49624743 + (GGGA)n Simple_repeat Simple_repeat 3 90 0 4 1135 185 0 0 39 chr11 72220136 72220162 -49623694 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 4 1136 420 247 121 17 chr11 72221569 72221742 -49622114 - B3A SINE B2 -7 191 1 4 1136 372 267 199 7 chr11 72222821 72222957 -49620899 + RMER15 LTR ERVL 336 497 -78 4 1136 199 234 0 25 chr11 72223149 72223228 -49620628 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1136 200 200 0 14 chr11 72223874 72223945 -49619911 + C-rich Low_complexity Low_complexity 2 71 0 4 1136 198 0 0 0 chr11 72224207 72224229 -49619627 + (CG)n Simple_repeat Simple_repeat 2 23 0 4 1136 216 0 0 0 chr11 72224229 72224252 -49619604 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1136 198 0 0 0 chr11 72225633 72225655 -49618201 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1136 800 250 58 19 chr11 72225750 72225958 -49617898 - B3 SINE B2 0 216 1 4 1136 441 0 0 0 chr11 72226061 72226110 -49617746 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1136 288 0 0 0 chr11 72229195 72229227 -49614629 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1136 625 258 16 21 chr11 72229246 72229418 -49614438 - B3A SINE B2 -43 173 1 4 1136 529 323 59 4 chr11 72229585 72229749 -49614107 - ID_B1 SINE B4 -41 251 78 4 1136 679 66 19 0 chr11 72230245 72230351 -49613505 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1136 414 0 0 0 chr11 72232391 72232437 -49611419 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1136 969 154 0 20 chr11 72232533 72232685 -49611171 - B1_Mur2 SINE Alu 0 149 1 4 1136 235 220 0 0 chr11 72232905 72232955 -49610901 + MER44A DNA MER2_type 10 59 -280 4 1136 508 257 9 9 chr11 72232967 72233077 -49610779 + PB1D10 SINE Alu 2 111 -6 4 1136 1124 152 11 0 chr11 72233141 72233297 -49610559 + B2_Mm2 SINE B2 1 158 -37 4 1136 441 0 0 0 chr11 72233297 72233346 -49610510 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 4 1136 1124 152 11 0 chr11 72233346 72233380 -49610476 + B2_Mm2 SINE B2 159 192 -3 4 1136 386 222 299 15 chr11 72233692 72233829 -49610027 + B4A SINE B4 1 176 -116 4 1136 230 227 106 0 chr11 72233841 72233907 -49609949 + B4A SINE B4 216 288 -4 4 1136 450 278 9 9 chr11 72233946 72234062 -49609794 + PB1D7 SINE Alu 3 118 -2 4 1136 200 184 0 20 chr11 72234514 72234564 -49609292 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 4 1136 433 269 78 50 chr11 72234573 72234714 -49609142 + RSINE1 SINE B4 3 147 -18 4 1136 414 0 0 0 chr11 72234720 72234766 -49609090 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1136 288 0 0 0 chr11 72234780 72234812 -49609044 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1136 426 272 17 42 chr11 72234836 72234955 -49608901 - PB1D10 SINE Alu 0 117 2 4 1136 1205 61 0 0 chr11 72235377 72235524 -49608332 + B1_Mm SINE Alu 1 147 0 4 1136 349 141 31 0 chr11 72235599 72235663 -49608193 + B1_Mm SINE Alu 82 147 0 4 1136 255 61 0 0 chr11 72235666 72235699 -49608157 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1136 486 228 8 73 chr11 72235699 72235822 -49608034 + RSINE1 SINE B4 51 165 0 4 1136 995 192 77 48 chr11 72235922 72236130 -49607726 + B3 SINE B2 1 214 -2 4 1136 674 202 0 8 chr11 72236132 72236257 -49607599 + B1_Mur4 SINE Alu 18 141 -9 4 1136 389 20 0 20 chr11 72236442 72236493 -49607363 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1136 584 239 14 48 chr11 72236535 72236680 -49607176 + B1_Mur3 SINE Alu 3 142 -7 4 1136 1225 41 0 14 chr11 72236695 72236843 -49607013 + B1_Mm SINE Alu 1 146 -1 4 1136 222 118 0 0 chr11 72237014 72237048 -49606808 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 1136 231 319 28 0 chr11 72237550 72237622 -49606234 - L1M5 LINE L1 -402 5772 5699 4 1136 293 336 50 0 chr11 72237646 72237765 -49606091 - L2a LINE L2 0 3426 3302 4 1136 295 261 10 42 chr11 72237912 72238008 -49605848 - ORR1E LTR MaLR -27 352 260 4 1136 574 250 14 14 chr11 72238058 72238204 -49605652 - ORR1E LTR MaLR -210 149 4 4 1136 2401 121 52 7 chr11 72238606 72239014 -49604842 + RMER6B LTR ERVK 1 426 -35 4 1136 660 335 99 26 chr11 72239364 72240050 -49603806 + L1MEc LINE L1 101 836 -5564 4 1136 539 307 51 111 chr11 72240050 72240111 -49603745 + ID SINE ID 3 61 -163 4 1136 1007 226 5 28 chr11 72240111 72240325 -49603531 + B3 SINE B2 2 210 -6 4 1136 539 307 51 111 chr11 72240325 72240479 -49603377 + ID_B1 SINE B4 62 205 -19 4 1136 891 131 82 43 chr11 72240479 72240663 -49603193 + B2_Mm2 SINE B2 5 195 0 4 1136 1303 64 19 83 chr11 72240729 72240934 -49602922 + B2_Mm2 SINE B2 3 194 -1 4 1136 711 218 80 43 chr11 72241028 72241215 -49602641 + B3A SINE B2 5 198 0 4 1136 334 229 178 22 chr11 72241357 72241597 -49602259 - L1M5 LINE L1 -1375 4771 4477 4 1136 267 31 0 0 chr11 72241599 72241631 -49602225 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1136 235 193 53 0 chr11 72241665 72241722 -49602134 + L1M5 LINE L1 5856 5915 -249 4 1136 640 146 71 71 chr11 72241960 72242100 -49601756 + B1_Mur2 SINE Alu 9 148 -1 4 1136 717 82 0 0 chr11 72242531 72242641 -49601215 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1136 288 0 0 0 chr11 72242807 72242839 -49601017 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1136 248 317 176 38 chr11 72242966 72243176 -49600680 + LTR55 LTR ERV 307 545 -3 4 1136 517 252 0 18 chr11 72243313 72243426 -49600430 + PB1D10 SINE Alu 1 111 -6 4 1136 224 297 67 38 chr11 72243639 72243744 -49600112 + RSINE1 SINE B4 54 161 -4 4 1136 817 142 7 7 chr11 72243873 72244008 -49599848 - B1_Mur3 SINE Alu -14 135 1 4 1136 469 286 53 0 chr11 72243893 72244026 -49599830 - B4 SINE B4 -87 205 66 4 1136 414 309 0 0 chr11 72244018 72244115 -49599741 - PB1D10 SINE Alu -8 109 13 4 1136 1474 44 61 0 chr11 72244142 72244323 -49599533 - B2_Mm1a SINE B2 0 193 2 4 1136 335 264 33 11 chr11 72244407 72244499 -49599357 - PB1D10 SINE Alu 0 117 24 4 1136 833 94 16 0 chr11 72244522 72244650 -49599206 + (TTTC)n Simple_repeat Simple_repeat 2 131 0 4 1136 1207 48 0 7 chr11 72244658 72244806 -49599050 - B1_Mm SINE Alu 0 147 1 4 1136 875 179 14 7 chr11 72244857 72245003 -49598853 - B1_Mus2 SINE Alu 0 147 1 4 1136 461 304 17 45 chr11 72245009 72245084 -49598772 - B3A SINE B2 0 198 130 4 1136 1107 95 0 0 chr11 72245084 72245242 -49598614 + (GAGAA)n Simple_repeat Simple_repeat 1 158 0 4 1136 461 290 17 105 chr11 72245242 72245366 -49598490 - B3A SINE B2 -69 129 15 4 1136 1053 188 24 24 chr11 72245491 72245698 -49598158 - B3 SINE B2 -9 207 1 5 1136 782 200 21 0 chr11 72245735 72245875 -49597981 + B1_Mur3 SINE Alu 2 144 -5 5 1136 662 172 104 7 chr11 72245889 72246024 -49597832 + B1_Mur3 SINE Alu 2 149 0 5 1136 276 241 97 9 chr11 72246057 72246170 -49597686 - L1MA6 LINE L1 -32 6268 6146 5 1136 1209 43 0 0 chr11 72246173 72246311 -49597545 + B1_Mm SINE Alu 1 138 -9 5 1136 236 211 40 66 chr11 72246358 72246434 -49597422 - YREP_Mm Unknown Unknown -1483 329 256 5 1136 425 216 39 0 chr11 72246387 72246489 -49597367 + PB1D10 SINE Alu 12 117 0 5 1136 247 295 0 0 chr11 72246516 72246594 -49597262 - L1MA6 LINE L1 -177 6120 6043 5 1136 227 281 31 82 chr11 72246868 72246965 -49596891 + MT2B LTR ERVL 166 257 -344 5 1136 725 145 30 15 chr11 72246878 72247011 -49596845 + B1_Mur4 SINE Alu 16 150 0 5 1136 1429 75 16 21 chr11 72247132 72247323 -49596533 - B2_Mm2 SINE B2 -4 191 2 5 1136 671 240 0 46 chr11 72247353 72247506 -49596350 + ID_B1 SINE B4 78 223 -1 5 1136 708 244 44 25 chr11 72247511 72247671 -49596185 + RSINE1 SINE B4 3 165 0 5 1136 578 220 16 25 chr11 72247711 72247832 -49596024 + PB1D9 SINE Alu 1 120 0 5 1136 641 201 0 6 chr11 72247880 72247894 -49595962 + polypurine Low_complexity Low_complexity 2 15 0 5 1136 1106 99 0 0 chr11 72247894 72248036 -49595820 + B1_Mm SINE Alu 1 142 -5 5 1136 641 201 0 6 chr11 72248036 72248186 -49595670 + GA-rich Low_complexity Low_complexity 16 164 0 5 1136 350 344 89 20 chr11 72248246 72248527 -49595329 - L1ME3A LINE L1 -200 5973 5672 5 1136 228 67 0 0 chr11 72249186 72249216 -49594640 + (GGA)n Simple_repeat Simple_repeat 2 31 0 5 1136 482 0 17 0 chr11 72249770 72249828 -49594028 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1136 25 0 0 0 chr11 72252453 72252478 -49591378 + AT_rich Low_complexity Low_complexity 1 25 0 5 1136 1219 61 0 0 chr11 72252487 72252635 -49591221 + B1_Mus1 SINE Alu 1 148 0 5 1136 656 238 76 0 chr11 72252642 72252814 -49591042 - B3 SINE B2 -5 211 27 5 1136 1170 61 0 13 chr11 72252826 72252975 -49590881 - B1_Mus2 SINE Alu 0 147 1 5 1136 206 226 0 0 chr11 72253737 72253790 -49590066 + T-rich Low_complexity Low_complexity 1 53 0 5 1136 216 86 0 0 chr11 72253794 72253829 -49590027 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1136 1208 68 0 0 chr11 72253830 72253976 -49589880 - B1_Mus2 SINE Alu -1 146 1 5 1136 26 64 0 0 chr11 72253980 72254027 -49589829 + AT_rich Low_complexity Low_complexity 1 47 0 5 1136 1333 94 16 5 chr11 72254027 72254054 -49589802 - B2_Mm2 SINE B2 0 195 166 5 1136 1218 68 0 0 chr11 72254054 72254202 -49589654 - B1_Mus1 SINE Alu 0 148 1 5 1136 1333 94 16 5 chr11 72254202 72254367 -49589489 - B2_Mm2 SINE B2 -30 165 1 5 1136 261 260 27 0 chr11 72267249 72267322 -49576534 + GA-rich Low_complexity Low_complexity 2 76 0 5 1136 253 243 28 28 chr11 72271087 72271159 -49572697 + GA-rich Low_complexity Low_complexity 4 75 0 5 1136 295 333 10 0 chr11 72271170 72271266 -49572590 + (TGGA)n Simple_repeat Simple_repeat 3 99 0 5 1136 232 211 65 112 chr11 72271669 72271776 -49572080 + MLT1G3 LTR MaLR 74 175 -420 5 1136 261 242 12 12 chr11 72273276 72273374 -49570482 - L1M LINE L1 -831 5363 5266 5 1136 207 0 0 0 chr11 72273483 72273506 -49570350 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 5 1136 704 101 66 16 chr11 72273777 72273898 -49569958 - B1_Mur4 SINE Alu -21 129 3 5 1136 980 127 44 50 chr11 72274060 72274242 -49569614 - B2_Mm2 SINE B2 -14 181 1 5 1136 360 190 0 0 chr11 72274272 72274351 -49569505 + CT-rich Low_complexity Low_complexity 2 80 0 5 1136 1085 266 10 65 chr11 72274380 72274686 -49569170 - B4A SINE B4 0 292 4 5 1136 678 273 32 23 chr11 72274689 72274917 -49568939 - B3A SINE B2 0 216 6 5 1136 944 297 49 17 chr11 72274937 72275348 -49568508 - L1M5 LINE L1 -536 5704 5281 5 1136 311 289 58 39 chr11 72276524 72276679 -49567177 - MIRb SINE MIR -61 207 50 5 1136 229 260 52 89 chr11 72276769 72276904 -49566952 - MIR3 SINE MIR -77 131 2 5 1136 282 342 75 0 chr11 72277559 72277679 -49566177 - MIRb SINE MIR -115 153 25 5 1136 1017 245 19 19 chr11 72277708 72277924 -49565932 - ID_B1 SINE B4 -7 217 2 5 1136 415 158 47 47 chr11 72277930 72278036 -49565820 - PB1D9 SINE Alu 0 120 15 5 1136 907 237 45 0 chr11 72278072 72278270 -49565586 + B3 SINE B2 1 207 -9 5 1136 287 254 133 50 chr11 72278292 72278412 -49565444 - MIR3 SINE MIR -73 135 6 5 1136 1902 171 41 17 chr11 72278519 72278881 -49564975 - ORR1D1 LTR MaLR -3 371 1 5 1136 333 179 0 0 chr11 72278885 72278941 -49564915 + ORR1C2 LTR MaLR 329 384 0 5 1136 232 318 91 39 chr11 72278957 72279111 -49564745 - L2b LINE L2 -32 3355 3194 5 1136 259 300 24 22 chr11 72279504 72279694 -49564162 - L2b LINE L2 -283 3143 2916 5 1136 379 274 99 31 chr11 72280164 72280236 -49563620 + MIRc SINE MIR 54 128 -140 5 1136 1212 279 75 29 chr11 72280236 72280650 -49563206 - MER63B DNA AcHobo 0 436 4 5 1136 379 274 99 31 chr11 72280650 72280739 -49563117 + MIRc SINE MIR 129 226 -42 5 1136 336 48 0 0 chr11 72281148 72281190 -49562666 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1136 534 184 5 32 chr11 72281230 72281415 -49562441 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1136 613 150 0 53 chr11 72281443 72281633 -49562223 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1136 200 345 142 0 chr11 72281851 72281964 -49561892 - MIRb SINE MIR -113 155 27 5 1136 185 329 35 12 chr11 72282423 72282509 -49561347 - MIR SINE MIR -63 145 58 5 1136 264 271 72 11 chr11 72283173 72283272 -49560584 + PB1D7 SINE Alu 11 117 0 5 1136 407 262 0 0 chr11 72283275 72283355 -49560501 + ID2 SINE ID 4 83 0 5 1136 492 242 144 8 chr11 72284505 72284630 -49559226 - B1F SINE Alu -7 142 1 5 1136 228 343 19 39 chr11 72284724 72284827 -49559029 - B4A SINE B4 -179 113 13 5 1136 259 320 0 26 chr11 72284756 72284833 -49559023 - ID4_ SINE ID 0 83 9 5 1136 254 297 19 75 chr11 72285356 72285516 -49558340 - L1MEd LINE L1 -5896 223 73 5 1136 267 79 0 0 chr11 72288740 72288778 -49555078 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1136 384 22 0 0 chr11 72288778 72288823 -49555033 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1136 213 308 124 9 chr11 72289285 72289390 -49554466 - MIR SINE MIR -89 173 57 5 1136 1056 300 185 30 chr11 72290466 72290745 -49553111 - MER21B LTR ERV1 -61 802 504 5 1136 396 0 0 0 chr11 72290745 72290789 -49553067 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1136 1056 300 185 30 chr11 72290789 72291197 -49552659 - MER21B LTR ERV1 -360 503 9 5 1136 336 24 0 0 chr11 72292116 72292157 -49551699 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1136 823 235 93 24 chr11 72292510 72292715 -49551141 + ID_B1 SINE B4 5 223 -1 5 1136 209 255 0 0 chr11 72293031 72293078 -49550778 - L2b LINE L2 -13 3362 3316 5 1136 284 333 0 11 chr11 72293501 72293592 -49550264 + ID_B1 SINE B4 85 174 -50 5 1136 283 324 73 9 chr11 72293592 72293608 -49550248 + PB1D10 SINE Alu 4 117 0 5 1136 648 198 24 0 chr11 72293633 72293759 -49550097 + B1_Mus2 SINE Alu 18 146 -1 5 1136 23 0 0 0 chr11 72293760 72293783 -49550073 + AT_rich Low_complexity Low_complexity 1 23 0 5 1136 445 184 26 0 chr11 72293792 72293868 -49549988 + ID4 SINE ID 2 79 -4 5 1136 218 118 0 0 chr11 72294268 72294302 -49549554 + B1_Mus2 SINE Alu 2 35 -112 5 1136 561 335 70 9 chr11 72294531 72294745 -49549111 + MIR SINE MIR 25 251 -11 5 1136 627 262 7 7 chr11 72296712 72296854 -49547002 + RSINE1 SINE B4 14 155 -10 5 1136 28 48 0 0 chr11 72296856 72296898 -49546958 + AT_rich Low_complexity Low_complexity 1 42 0 5 1136 1061 230 62 0 chr11 72296913 72297122 -49546734 + ID_B1 SINE B4 3 224 0 5 1136 686 228 104 42 chr11 72297130 72297322 -49546534 + B3 SINE B2 6 209 -7 5 1136 22 0 0 0 chr11 72297329 72297351 -49546505 + AT_rich Low_complexity Low_complexity 1 22 0 5 1136 1284 34 0 0 chr11 72297353 72297500 -49546356 + B1_Mus2 SINE Alu 1 147 0 5 1136 246 32 0 0 chr11 72297728 72297759 -49546097 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1136 1157 68 0 7 chr11 72297759 72297906 -49545950 + B1_Mus2 SINE Alu 2 147 0 5 1136 198 0 0 0 chr11 72297906 72297928 -49545928 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1136 497 310 16 0 chr11 72300019 72300148 -49543708 + RSINE1 SINE B4 4 134 -31 5 1136 657 239 67 11 chr11 72300210 72300388 -49543468 + B4 SINE B4 105 292 0 5 1136 218 129 15 46 chr11 72303210 72303275 -49540581 + (CCG)n Simple_repeat Simple_repeat 1 63 0 5 1136 40 59 0 0 chr11 72303297 72303365 -49540491 + GC_rich Low_complexity Low_complexity 1 68 0 5 1136 294 200 0 16 chr11 72304117 72304178 -49539678 + PB1D7 SINE Alu 2 61 -59 5 1136 269 269 15 0 chr11 72304450 72304517 -49539339 + B4 SINE B4 107 174 -118 5 1136 288 206 38 4 chr11 72304517 72304542 -49539314 + B1F2 SINE Alu 22 119 -1 5 1136 654 37 0 0 chr11 72304885 72304966 -49538890 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 1136 768 204 7 7 chr11 72305732 72305875 -49537981 - B1_Mur2 SINE Alu -2 147 5 5 1136 373 287 30 0 chr11 72306138 72306239 -49537617 + PB1D10 SINE Alu 13 116 -1 5 1136 300 247 90 0 chr11 72306278 72306362 -49537494 + MER103 DNA DNA 4 95 -71 5 1136 2141 208 14 2 chr11 72306362 72306776 -49537080 + MTD LTR MaLR 1 419 0 5 1136 426 320 82 48 chr11 72307781 72308073 -49535783 + L2c LINE L2 3084 3385 -2 5 1136 827 140 7 14 chr11 72308436 72308574 -49535282 - B1_Mur3 SINE Alu -1 148 12 5 1136 332 295 37 75 chr11 72308437 72308598 -49535258 - B4A SINE B4 -68 224 70 6 1136 387 0 0 0 chr11 72308763 72308806 -49535050 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1136 307 236 125 0 chr11 72308814 72308886 -49534970 - ID4 SINE ID 0 83 3 6 1136 475 305 82 12 chr11 72312153 72312522 -49531334 + L2a LINE L2 2743 3150 -276 6 1136 252 0 0 0 chr11 72312557 72312585 -49531271 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1136 185 333 0 40 chr11 72312599 72312674 -49531182 + L2a LINE L2 3255 3326 -100 6 1136 288 0 0 0 chr11 72312689 72312721 -49531135 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1136 484 278 87 0 chr11 72313619 72313792 -49530064 + MIR SINE MIR 18 205 -57 6 1136 209 345 26 0 chr11 72313826 72313939 -49529917 + L2b LINE L2 3038 3153 -222 6 1136 441 0 0 0 chr11 72313958 72314007 -49529849 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1136 198 0 0 0 chr11 72314329 72314351 -49529505 + (TAA)n Simple_repeat Simple_repeat 2 23 0 6 1136 470 319 42 10 chr11 72314370 72314563 -49529293 - MIR SINE MIR -58 204 6 6 1136 776 204 14 0 chr11 72314642 72314789 -49529067 + B1_Mur1 SINE Alu 1 149 0 6 1136 259 285 82 30 chr11 72315961 72316095 -49527761 + MER5A DNA MER1_type 49 189 0 6 1136 216 143 17 35 chr11 72316427 72316485 -49527371 + C-rich Low_complexity Low_complexity 4 60 0 6 1136 247 147 84 42 chr11 72317141 72317212 -49526644 + L3 LINE CR1 4128 4201 -288 6 1136 219 245 208 5 chr11 72317323 72317431 -49526425 - MIRb SINE MIR -92 176 41 6 1136 336 370 82 11 chr11 72317650 72317833 -49526023 - MIRb SINE MIR -1 267 72 6 1136 246 268 153 10 chr11 72318310 72318408 -49525448 + MIRc SINE MIR 44 155 -113 6 1136 330 114 28 14 chr11 72320828 72320899 -49522957 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1136 201 354 32 0 chr11 72321499 72321657 -49522199 + (CA)n Simple_repeat Simple_repeat 1 163 0 6 1136 483 168 19 19 chr11 72321775 72321878 -49521978 + PB1 SINE Alu 23 125 -2 6 1136 333 0 0 0 chr11 72321994 72322031 -49521825 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1136 234 159 23 0 chr11 72322945 72322989 -49520867 - L3 LINE CR1 -17 4472 4428 6 1136 390 333 126 25 chr11 72323327 72323644 -49520212 + HAL1b LINE L1 26 374 -1635 6 1136 235 304 38 10 chr11 72323654 72323779 -49520077 + GA-rich Low_complexity Low_complexity 1 128 0 6 1136 459 204 149 112 chr11 72323827 72323980 -49519876 + B3A SINE B2 3 165 -33 6 1136 234 0 0 0 chr11 72323980 72324006 -49519850 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1136 459 204 149 112 chr11 72324006 72324040 -49519816 + B3A SINE B2 166 197 -1 6 1136 319 266 25 0 chr11 72324049 72324128 -49519728 + GA-rich Low_complexity Low_complexity 3 83 0 6 1136 386 322 80 65 chr11 72324134 72324396 -49519460 + HAL1b LINE L1 353 618 -1391 6 1136 597 298 122 137 chr11 72324775 72325292 -49518564 + MLT1F2 LTR MaLR 52 560 0 6 1136 528 158 232 40 chr11 72325394 72325519 -49518337 - B1_Mur4 SINE Alu 0 150 2 6 1136 769 197 42 0 chr11 72325545 72325687 -49518169 + B1_Mur2 SINE Alu 2 149 0 6 1136 294 283 23 36 chr11 72325725 72325826 -49518030 + B1F1 SINE Alu 1 99 -21 6 1136 1018 223 22 50 chr11 72325939 72326161 -49517695 + B3 SINE B2 1 216 0 6 1136 788 272 0 61 chr11 72326205 72326436 -49517420 + B4A SINE B4 54 270 -22 6 1136 688 244 62 0 chr11 72326773 72326933 -49516923 - ID_B1 SINE B4 -53 171 2 6 1136 1172 44 0 0 chr11 72326967 72327102 -49516754 + B1_Mus1 SINE Alu 1 135 -13 6 1136 315 0 0 0 chr11 72327105 72327140 -49516716 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1136 464 227 107 16 chr11 72327140 72327261 -49516595 - B1F2 SINE Alu -17 132 1 6 1136 1117 181 9 14 chr11 72328192 72328411 -49515445 - URR1A DNA MER1_type -2 224 7 6 1136 553 295 21 10 chr11 72328631 72328823 -49515033 + HAL1b LINE L1 1304 1497 -512 6 1136 303 331 16 8 chr11 72328915 72329037 -49514819 + L1MB8 LINE L1 5889 6011 -167 6 1136 1388 199 19 4 chr11 72329050 72329317 -49514539 - ORR1D1 LTR MaLR 0 374 104 6 1136 742 139 8 0 chr11 72329334 72329456 -49514400 + ORR1D1 LTR MaLR 1 123 -251 6 1136 265 53 0 0 chr11 72329453 72329491 -49514365 + ORR1D1 LTR MaLR 337 374 0 6 1136 492 254 16 111 chr11 72329493 72329561 -49514295 + L1MB8 LINE L1 6007 6068 -110 6 1136 563 265 8 0 chr11 72329561 72329678 -49514178 + PB1 SINE Alu 3 120 -7 6 1136 492 254 16 111 chr11 72329678 72329799 -49514057 + L1MB8 LINE L1 6069 6178 0 6 1136 611 300 19 6 chr11 72329809 72329970 -49513886 + RSINE1 SINE B4 3 165 0 6 1136 1206 159 54 10 chr11 72330030 72330233 -49513623 + B3 SINE B2 4 215 -1 6 1136 600 163 94 39 chr11 72330286 72330414 -49513442 + B1F SINE Alu 13 147 -2 6 1136 393 206 112 10 chr11 72330572 72330670 -49513186 - B1_Mur2 SINE Alu -2 147 40 6 1136 1050 182 80 10 chr11 72330719 72330919 -49512937 + B3 SINE B2 1 214 -2 6 1136 234 98 39 19 chr11 72330920 72330972 -49512884 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1136 216 313 208 13 chr11 72331087 72331236 -49512620 + L2a LINE L2 2257 2434 -985 6 1136 744 237 13 0 chr11 72331248 72331400 -49512456 + MTEa LTR MaLR 22 175 -204 6 1136 947 86 86 0 chr11 72331401 72331529 -49512327 + B1_Mus1 SINE Alu 2 140 -8 6 1136 729 88 0 0 chr11 72331532 72331634 -49512222 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 6 1136 207 0 0 0 chr11 72331634 72331657 -49512199 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 6 1136 1193 80 0 14 chr11 72331657 72331873 -49511983 + (GGAA)n Simple_repeat Simple_repeat 1 212 0 6 1136 616 241 7 21 chr11 72331906 72332046 -49511810 + B1_Mur1 SINE Alu 10 147 -2 6 1136 324 280 20 51 chr11 72332068 72332132 -49511724 + MTEa LTR MaLR 167 227 -152 6 1136 1474 214 82 13 chr11 72332132 72332511 -49511345 + MTD LTR MaLR 1 405 -14 6 1136 487 223 121 7 chr11 72332515 72332564 -49511292 + MTEa LTR MaLR 224 274 -105 6 1136 198 0 0 0 chr11 72332564 72332586 -49511270 + (CCCCCG)n Simple_repeat Simple_repeat 3 24 0 6 1136 487 223 121 7 chr11 72332586 72332676 -49511180 + MTEa LTR MaLR 275 378 -1 6 1136 943 293 45 17 chr11 72332676 72333030 -49510826 + L2a LINE L2 2433 2796 -623 6 1136 780 241 0 64 chr11 72333080 72333253 -49510603 - RSINE1 SINE B4 -2 163 2 6 1136 373 283 115 14 chr11 72333273 72333464 -49510392 + MLT1H1 LTR MaLR 1 205 -355 6 1136 1042 225 9 60 chr11 72333622 72333809 -49510047 + ID_B1 SINE B4 3 179 -45 6 1136 2641 125 50 2 chr11 72333809 72334209 -49509647 - MTC LTR MaLR 0 421 3 6 1136 1042 225 9 60 chr11 72334209 72334253 -49509603 + ID_B1 SINE B4 180 222 -2 6 1136 346 206 24 24 chr11 72334215 72334334 -49509522 + MLT1H1 LTR MaLR 437 560 0 6 1136 233 276 101 25 chr11 72334334 72334453 -49509403 + L2a LINE L2 2808 2935 -484 6 1136 210 314 152 55 chr11 72334457 72334787 -49509069 + L2a LINE L2 2910 3271 -155 6 1136 563 344 67 67 chr11 72335172 72335263 -49508593 + MLT1G3 LTR MaLR 9 108 -487 6 1136 759 286 21 0 chr11 72335263 72335452 -49508404 + B3A SINE B2 5 197 -1 6 1136 563 289 219 28 chr11 72335452 72335869 -49507987 + MLT1G3 LTR MaLR 109 591 0 6 1136 350 286 65 30 chr11 72335880 72336056 -49507800 - MIRc SINE MIR -73 195 7 6 1136 204 40 0 0 chr11 72336691 72336716 -49507140 + (CATA)n Simple_repeat Simple_repeat 2 26 0 6 1136 574 231 45 35 chr11 72336828 72337030 -49506826 + L1M4 LINE L1 3211 3414 -2732 6 1136 1957 213 68 13 chr11 72337039 72337456 -49506400 + Lx9 LINE L1 6991 7421 -223 6 1136 423 0 0 0 chr11 72337456 72337503 -49506353 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1136 1957 213 68 13 chr11 72337503 72337552 -49506304 + Lx9 LINE L1 7422 7482 -162 6 1136 1018 259 73 26 chr11 72337544 72338111 -49505745 + L1M4 LINE L1 3285 3905 -2241 6 1136 429 305 85 109 chr11 72338164 72338495 -49505361 + L2a LINE L2 2965 3287 -139 6 1136 266 247 158 21 chr11 72338506 72338601 -49505255 - PB1D10 SINE Alu -9 108 1 6 1136 359 333 7 68 chr11 72338605 72338753 -49505103 + L2a LINE L2 3270 3408 -18 6 1136 799 178 47 0 chr11 72338909 72339038 -49504818 + B1_Mus2 SINE Alu 1 135 -12 6 1136 390 42 0 0 chr11 72339039 72339087 -49504769 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1136 186 352 14 0 chr11 72340224 72340295 -49503561 + MIRb SINE MIR 117 188 -80 6 1136 2444 150 35 5 chr11 72340371 72340772 -49503084 + MTC LTR MaLR 1 413 -8 6 1136 812 230 102 0 chr11 72340923 72341110 -49502746 - B3 SINE B2 -6 210 5 6 1136 345 140 0 0 chr11 72341119 72341176 -49502680 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1136 210 125 50 0 chr11 72341198 72341238 -49502618 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 6 1136 666 244 30 0 chr11 72341243 72341378 -49502478 - RSINE1 SINE B4 -25 140 2 6 1136 949 129 0 14 chr11 72341410 72341551 -49502305 + B1_Mur4 SINE Alu 4 142 -8 6 1136 368 156 0 11 chr11 72341552 72341643 -49502213 + GA-rich Low_complexity Low_complexity 1 90 0 6 1136 890 148 21 21 chr11 72343578 72343723 -49500133 - B1_Mur1 SINE Alu -1 148 4 6 1136 187 247 135 73 chr11 72344101 72344197 -49499659 - MIRc SINE MIR -144 124 23 6 1136 875 246 156 19 chr11 72344565 72344822 -49499034 + B4 SINE B4 1 292 0 6 1136 750 275 19 0 chr11 72344845 72345005 -49498851 + RSINE1 SINE B4 3 165 0 6 1136 1312 164 5 14 chr11 72345025 72345242 -49498614 - B3 SINE B2 0 216 2 6 1136 401 227 7 179 chr11 72345627 72345772 -49498084 + MTD LTR MaLR 1 120 -299 6 1136 575 155 48 0 chr11 72345770 72345873 -49497983 - B1_Mur2 SINE Alu 0 149 42 6 1136 269 227 9 0 chr11 72345919 72346029 -49497827 + CT-rich Low_complexity Low_complexity 1 111 0 6 1136 321 185 0 36 chr11 72346029 72346085 -49497771 - PB1D9 SINE Alu -61 59 6 6 1136 319 179 179 0 chr11 72346092 72346125 -49497731 - HAL1-3A_ME LINE L1 -788 2070 2024 6 1136 813 168 73 0 chr11 72346125 72346262 -49497594 - B1_Mur2 SINE Alu -2 147 1 6 1136 319 179 179 0 chr11 72346262 72346306 -49497550 - HAL1-3A_ME LINE L1 -835 2023 1980 6 1136 831 231 73 45 chr11 72346306 72346483 -49497373 - B3A SINE B2 -16 182 1 6 1136 1343 164 80 47 chr11 72346484 72346784 -49497072 + MTD LTR MaLR 110 419 0 6 1136 311 286 176 60 chr11 72347021 72347203 -49496653 + MLT1C LTR MaLR 207 409 -58 6 1136 1033 122 0 13 chr11 72347212 72347361 -49496495 - B1_Mus1 SINE Alu 0 148 2 6 1136 243 0 0 0 chr11 72347373 72347400 -49496456 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1136 213 178 0 0 chr11 72347467 72347512 -49496344 + T-rich Low_complexity Low_complexity 2 46 0 6 1136 318 50 0 0 chr11 72347601 72347641 -49496215 + (TATG)n Simple_repeat Simple_repeat 4 43 0 6 1136 627 244 92 0 chr11 72347642 72347773 -49496083 - RSINE1 SINE B4 -21 144 2 7 1136 699 227 20 7 chr11 72347775 72347926 -49495930 - ID_B1 SINE B4 -70 154 2 7 1136 258 186 85 0 chr11 72347934 72347993 -49495863 + MLT1C LTR MaLR 440 503 -2 6 1136 466 247 40 97 chr11 72348293 72348468 -49495388 + MIRb SINE MIR 19 183 -85 7 1136 498 267 0 0 chr11 72348509 72348610 -49495246 + ZP3AR Satellite Satellite 44 144 -68 7 1136 315 224 0 0 chr11 72348613 72348671 -49495185 + ID2 SINE ID 26 83 0 7 1136 1206 130 5 5 chr11 72348684 72348840 -49495016 + B2_Mm2 SINE B2 2 157 -38 7 1136 273 75 0 0 chr11 72348840 72348880 -49494976 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 7 1136 1206 130 5 5 chr11 72348880 72348917 -49494939 + B2_Mm2 SINE B2 158 194 -1 7 1136 900 203 53 5 chr11 72349104 72349292 -49494564 + B3 SINE B2 5 201 -15 7 1136 263 343 75 40 chr11 72351507 72351680 -49492176 - MIRb SINE MIR -67 201 23 7 1137 198 261 90 11 chr11 72352319 72352408 -49491448 - MIRb SINE MIR -66 202 107 7 1137 765 204 30 8 chr11 72353044 72353177 -49490679 + B1_Mur3 SINE Alu 2 137 -12 7 1137 650 65 11 0 chr11 72353178 72353270 -49490586 + (GAA)n Simple_repeat Simple_repeat 2 94 0 7 1137 360 64 0 0 chr11 72353274 72353321 -49490535 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1137 717 12 0 0 chr11 72353321 72353403 -49490453 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 7 1137 397 293 6 87 chr11 72353415 72353430 -49490426 + ID_B1 SINE B4 73 217 -4 7 1137 650 269 7 14 chr11 72353430 72353573 -49490283 + B1_Mur1 SINE Alu 1 142 -7 7 1137 863 196 7 0 chr11 72353577 72353725 -49490131 + B1_Mur2 SINE Alu 1 149 0 7 1137 196 119 67 67 chr11 72354270 72354315 -49489541 + MIRm SINE MIR 64 108 -168 7 1137 406 298 86 12 chr11 72354549 72354608 -49489248 + ID SINE ID 1 66 -158 7 1137 803 213 190 0 chr11 72354608 72354782 -49489074 - ID_B1 SINE B4 -16 208 2 7 1137 406 298 86 12 chr11 72354782 72354802 -49489054 + ID_B1 SINE B4 67 175 -49 7 1137 401 278 10 30 chr11 72354802 72354885 -49488971 + PB1D10 SINE Alu 11 94 -23 7 1137 2277 96 3 58 chr11 72354885 72355229 -49488627 + ORR1A2 LTR MaLR 3 327 0 7 1137 401 278 10 30 chr11 72355229 72355245 -49488611 + PB1D10 SINE Alu 95 108 -9 7 1137 1022 198 14 10 chr11 72355258 72355467 -49488389 - B3 SINE B2 -4 212 3 7 1137 363 221 0 0 chr11 72355792 72355869 -49487987 + MADE2 DNA Mariner 4 80 0 7 1137 255 279 128 13 chr11 72355909 72356058 -49487798 - L1M5 LINE L1 -594 5600 5435 7 1137 425 219 126 0 chr11 72356059 72356178 -49487678 - ID_B1 SINE B4 -3 221 88 7 1137 201 247 37 0 chr11 72356199 72356280 -49487576 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 1137 572 188 8 59 chr11 72356458 72356577 -49487279 - B1F2 SINE Alu -1 148 36 7 1137 332 308 29 183 chr11 72356690 72356789 -49487067 + B1F1 SINE Alu 1 73 -76 7 1137 971 155 13 20 chr11 72356789 72356940 -49486916 - B1_Mur4 SINE Alu 0 150 1 7 1137 332 308 29 183 chr11 72356940 72357015 -49486841 + B1F1 SINE Alu 74 148 -1 7 1137 1037 215 19 14 chr11 72357031 72357239 -49486617 + B3 SINE B2 8 216 0 7 1137 803 203 7 7 chr11 72357255 72357404 -49486452 + B1_Mur1 SINE Alu 1 149 0 7 1137 1411 82 5 15 chr11 72357407 72357604 -49486252 + B2_Mm2 SINE B2 1 195 0 7 1137 28 29 0 0 chr11 72357617 72357652 -49486204 + AT_rich Low_complexity Low_complexity 1 35 0 7 1137 507 265 91 0 chr11 72357866 72357998 -49485858 - B1_Mus2 SINE Alu -1 146 3 7 1137 427 137 54 49 chr11 72358009 72358103 -49485753 - B1F1 SINE Alu 0 149 53 7 1137 232 238 0 0 chr11 72358120 72358162 -49485694 + MER2B DNA MER2_type 294 335 -1 7 1137 387 314 73 31 chr11 72358168 72358359 -49485497 - Charlie2a DNA MER1_type -1205 1656 1458 7 1137 195 42 0 0 chr11 72359069 72359093 -49484763 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 7 1137 435 225 33 11 chr11 72359619 72359709 -49484147 + ID_B1 SINE B4 75 166 -58 7 1137 241 292 106 62 chr11 72359709 72359726 -49484130 + MT2B LTR ERVL 269 361 -240 7 1137 1222 41 7 7 chr11 72359729 72359876 -49483980 - B1_Mus1 SINE Alu 0 148 2 7 1137 279 0 0 0 chr11 72360301 72360332 -49483524 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1137 985 201 62 5 chr11 72360367 72360562 -49483294 - ID_B1 SINE B4 -16 208 3 7 1137 656 262 14 14 chr11 72362263 72362406 -49481450 + ID_B1 SINE B4 82 224 0 7 1137 1065 219 20 5 chr11 72362604 72362806 -49481050 + ID_B1 SINE B4 18 222 -2 7 1137 327 331 60 20 chr11 72362810 72362961 -49480895 + RSINE1 SINE B4 4 160 -5 7 1137 615 226 32 58 chr11 72364226 72364381 -49479475 + RSINE1 SINE B4 2 152 -13 7 1137 315 0 0 0 chr11 72364412 72364447 -49479409 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 7 1137 211 191 0 0 chr11 72364465 72364507 -49479349 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1137 832 214 31 46 chr11 72364539 72364759 -49479097 + ID_B1 SINE B4 5 224 0 7 1137 621 256 37 37 chr11 72364782 72364944 -49478912 + RSINE1 SINE B4 4 165 0 7 1137 390 237 59 138 chr11 72364974 72365126 -49478730 + B1_Mur1 SINE Alu 1 140 -9 7 1137 745 200 0 22 chr11 72365454 72365592 -49478264 + RSINE1 SINE B4 2 136 -29 7 1137 361 296 75 34 chr11 72365598 72365745 -49478111 + L1MC4 LINE L1 7883 8035 -7 7 1137 852 266 127 9 chr11 72365746 72366090 -49477766 + L1M3 LINE L1 5282 5667 -513 7 1137 331 268 5 7 chr11 72366164 72366279 -49477577 + L1MB5 LINE L1 5625 5738 -442 7 1137 315 145 0 101 chr11 72366421 72366490 -49477366 + ID4_ SINE ID 3 64 -19 7 1137 465 286 199 11 chr11 72366496 72366863 -49476993 + L1MB5 LINE L1 5701 6136 -38 7 1137 297 282 26 0 chr11 72366870 72366948 -49476908 - ID4 SINE ID -2 81 2 7 1137 297 0 0 0 chr11 72366952 72366985 -49476871 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1137 293 168 42 0 chr11 72366985 72367075 -49476781 + (TA)n Simple_repeat Simple_repeat 2 95 0 7 1137 514 274 0 0 chr11 72367077 72367179 -49476677 - PB1 SINE Alu -14 113 12 7 1137 1391 89 16 16 chr11 72367202 72367395 -49476461 + B2_Mm2 SINE B2 1 193 -2 7 1137 475 213 64 0 chr11 72367445 72367539 -49476317 - PB1D10 SINE Alu 0 117 18 7 1137 271 234 11 80 chr11 72367461 72367549 -49476307 - MT2B LTR ERVL -346 255 174 7 1137 437 321 112 12 chr11 72367560 72367730 -49476126 + 7SLRNA srpRNA srpRNA 2 188 -126 7 1137 775 191 13 45 chr11 72367863 72368017 -49475839 - B1_Mur2 SINE Alu 0 149 1 7 1137 817 159 72 0 chr11 72368061 72368199 -49475657 + B1_Mus1 SINE Alu 1 148 0 7 1137 201 39 0 0 chr11 72368384 72368410 -49475446 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1137 739 85 246 0 chr11 72368423 72368541 -49475315 - B1_Mm SINE Alu 0 147 1 7 1137 330 171 123 41 chr11 72368666 72368739 -49475117 + B3A SINE B2 1 79 -119 7 1137 30 45 0 0 chr11 72368811 72368855 -49475001 + AT_rich Low_complexity Low_complexity 1 44 0 7 1137 1608 52 0 0 chr11 72368865 72369057 -49474799 + B2_Mm1a SINE B2 2 193 0 7 1137 240 83 81 32 chr11 72369078 72369092 -49474764 + A-rich Low_complexity Low_complexity 1 15 0 7 1137 1206 62 0 0 chr11 72369092 72369238 -49474618 + B1_Mus2 SINE Alu 1 146 -1 7 1137 240 83 81 32 chr11 72369238 72369285 -49474571 + A-rich Low_complexity Low_complexity 16 65 0 7 1137 381 155 0 78 chr11 72369287 72369364 -49474492 + B1_Mur2 SINE Alu 27 97 -52 7 1137 885 153 14 7 chr11 72369380 72369525 -49474331 + B1_Mur4 SINE Alu 5 150 0 7 1137 186 143 0 0 chr11 72369525 72369560 -49474296 + (TAAAA)n Simple_repeat Simple_repeat 5 39 0 7 1137 303 104 0 0 chr11 72369935 72369983 -49473873 + (ATGGTG)n Simple_repeat Simple_repeat 1 48 0 7 1137 409 227 86 57 chr11 72370111 72370251 -49473605 + MIR SINE MIR 74 217 -45 7 1137 301 321 23 70 chr11 72370306 72370477 -49473379 + RSINE1 SINE B4 3 165 0 7 1137 677 275 19 24 chr11 72370524 72370736 -49473120 + B3 SINE B2 5 215 -1 7 1137 22 0 0 0 chr11 72370738 72370760 -49473096 + AT_rich Low_complexity Low_complexity 1 22 0 7 1137 516 174 179 17 chr11 72370760 72370877 -49472979 + B1_Mur2 SINE Alu 1 136 -13 7 1137 584 62 12 0 chr11 72370877 72370958 -49472898 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 7 1137 668 185 0 63 chr11 72370958 72371085 -49472771 + PB1D9 SINE Alu 2 120 0 7 1137 180 111 0 0 chr11 72371087 72371114 -49472742 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 7 1137 258 176 0 0 chr11 72371112 72371163 -49472693 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 7 1137 602 258 16 8 chr11 72371181 72371310 -49472546 + ID_B1 SINE B4 93 222 -2 7 1137 370 220 231 25 chr11 72371354 72371373 -49472483 + ID_B1 SINE B4 79 223 0 7 1137 499 238 20 0 chr11 72371373 72371474 -49472382 + PB1D7 SINE Alu 18 120 0 7 1137 285 146 0 0 chr11 72371475 72371523 -49472333 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 7 1137 240 274 211 53 chr11 72372565 72372702 -49471154 - B4A SINE B4 -49 243 89 7 1137 231 36 0 0 chr11 72372702 72372730 -49471126 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1137 241 268 35 22 chr11 72372730 72372803 -49471053 - RSINE1 SINE B4 -204 88 1 7 1137 424 189 131 9 chr11 72373064 72373171 -49470685 + PB1D7 SINE Alu 1 120 0 7 1137 186 133 0 0 chr11 72373171 72373201 -49470655 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 7 1137 294 194 0 0 chr11 72373207 72373274 -49470582 + L1M3 LINE L1 5758 5824 -356 7 1137 306 358 45 9 chr11 72373275 72373385 -49470471 + PB1 SINE Alu 3 116 -11 7 1137 947 123 7 0 chr11 72373385 72373539 -49470317 + (GAAA)n Simple_repeat Simple_repeat 4 158 0 7 1137 303 28 0 0 chr11 72373551 72373587 -49470269 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 8 1137 1123 146 0 86 chr11 72373587 72373797 -49470059 + B2_Mm2 SINE B2 4 195 0 8 1137 714 129 120 8 chr11 72373862 72373995 -49469861 + B1_Mus1 SINE Alu 1 148 0 8 1137 812 126 101 16 chr11 72374202 72374331 -49469525 + B1_Mur4 SINE Alu 10 149 -1 8 1137 474 281 26 9 chr11 72374347 72374462 -49469394 + RSINE1 SINE B4 49 165 0 8 1137 467 240 53 89 chr11 72374503 72374650 -49469206 + RSINE1 SINE B4 3 149 -16 8 1137 186 118 0 0 chr11 72374650 72374684 -49469172 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1137 467 240 53 89 chr11 72374684 72374705 -49469151 + RSINE1 SINE B4 150 165 0 8 1137 868 180 0 0 chr11 72374735 72374874 -49468982 - B1_Mur1 SINE Alu -10 139 1 8 1137 414 0 0 0 chr11 72375159 72375205 -49468651 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1137 201 138 0 0 chr11 72375205 72375234 -49468622 + (GGA)n Simple_repeat Simple_repeat 2 30 0 8 1137 587 161 0 0 chr11 72375252 72375339 -49468517 - B1_Mur1 SINE Alu -21 128 42 8 1137 302 181 128 68 chr11 72375376 72375524 -49468332 - L1MEc LINE L1 -5993 407 251 8 1137 363 161 0 16 chr11 72375527 72375590 -49468266 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 8 1137 335 203 0 33 chr11 72375590 72375651 -49468205 - PB1D9 SINE Alu -61 59 1 8 1137 353 277 107 93 chr11 72375677 72376025 -49467831 - MLT1F LTR MaLR -3 576 168 8 1137 288 0 0 0 chr11 72376179 72376211 -49467645 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1137 686 222 36 36 chr11 72376389 72376529 -49467327 + ID_B1 SINE B4 81 220 -4 8 1137 335 266 110 64 chr11 72376539 72376712 -49467144 + B3A SINE B2 1 181 -17 8 1137 923 254 24 0 chr11 72376716 72376925 -49466931 + B3 SINE B2 1 214 -2 8 1137 349 351 12 43 chr11 72376946 72377107 -49466749 + RSINE1 SINE B4 4 159 -6 8 1137 26 50 0 0 chr11 72377131 72377171 -49466685 + AT_rich Low_complexity Low_complexity 1 40 0 8 1137 633 156 182 32 chr11 72377175 72377301 -49466555 + B1_Mus1 SINE Alu 3 147 -1 8 1137 419 284 111 8 chr11 72377336 72377453 -49466403 + ID_B1 SINE B4 75 203 -21 8 1137 543 152 248 0 chr11 72377607 72377712 -49466144 + B1_Mur1 SINE Alu 19 149 0 8 1137 870 103 151 6 chr11 72378062 72378204 -49465652 + B2_Mm1a SINE B2 1 161 -32 8 1137 312 27 0 0 chr11 72378204 72378241 -49465615 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 8 1137 870 103 151 6 chr11 72378241 72378264 -49465592 + B2_Mm1a SINE B2 162 189 -4 8 1137 875 223 55 10 chr11 72378283 72378482 -49465374 + B3 SINE B2 3 210 -6 8 1137 1078 45 52 0 chr11 72378487 72378621 -49465235 + B1_Mus1 SINE Alu 1 141 -7 8 1137 201 74 0 0 chr11 72378624 72378651 -49465205 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1137 219 132 0 50 chr11 72378712 72378752 -49465104 + PB1D9 SINE Alu 76 113 -7 8 1137 469 252 9 70 chr11 72378758 72378873 -49464983 + B1_Mur2 SINE Alu 1 108 -12 8 1137 285 98 0 0 chr11 72378874 72378915 -49464941 + (T)n Simple_repeat Simple_repeat 1 41 0 8 1137 601 83 3 33 chr11 72378915 72379034 -49464822 - B1_Mm SINE Alu 0 148 40 8 1137 1292 289 155 6 chr11 72379044 72379542 -49464314 + Lx8 LINE L1 6861 7432 -41 8 1137 1269 98 33 5 chr11 72379559 72379743 -49464113 + B2_Mm2 SINE B2 2 190 -5 8 1137 31 0 0 0 chr11 72379780 72379811 -49464045 + AT_rich Low_complexity Low_complexity 1 31 0 8 1137 204 358 147 43 chr11 72379872 72380503 -49463353 + L2 LINE L2 674 1370 -2049 8 1137 345 206 32 0 chr11 72380866 72380929 -49462927 + ID SINE ID 1 65 -159 8 1137 292 284 24 12 chr11 72380929 72380948 -49462908 + ID4 SINE ID 1 83 0 8 1137 1288 263 114 9 chr11 72380966 72381396 -49462460 + Lx6 LINE L1 6569 7423 -37 8 1137 452 244 164 18 chr11 72381396 72381564 -49462292 + B3 SINE B2 8 198 0 8 1137 392 261 0 0 chr11 72381548 72381636 -49462220 + ID_B1 SINE B4 137 224 0 8 1137 792 158 51 92 chr11 72381660 72381855 -49462001 + B2_Mm2 SINE B2 2 188 -7 8 1137 1386 53 31 16 chr11 72381860 72382038 -49461818 + B2_Mm2 SINE B2 1 182 -13 8 1137 1205 68 0 0 chr11 72382038 72382186 -49461670 + B1_Mus1 SINE Alu 1 148 0 8 1137 1386 53 31 16 chr11 72382186 72382199 -49461657 + B2_Mm2 SINE B2 183 195 0 8 1137 225 77 18 55 chr11 72382203 72382239 -49461617 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 8 1137 1244 48 0 7 chr11 72382239 72382387 -49461469 + B1_Mm SINE Alu 1 147 0 8 1137 225 77 18 55 chr11 72382387 72382405 -49461451 + (TAAAAA)n Simple_repeat Simple_repeat 2 18 0 8 1137 217 0 61 0 chr11 72382866 72382899 -49460957 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1137 936 41 47 39 chr11 72382899 72383019 -49460837 - B1_Mm SINE Alu -6 141 19 8 1137 445 273 74 134 chr11 72382901 72383117 -49460739 - B4 SINE B4 -71 221 19 8 1137 386 261 211 32 chr11 72383111 72383234 -49460622 - RSINE1 SINE B4 -2 163 19 8 1137 1227 14 14 0 chr11 72383450 72383590 -49460266 + B1_Mus1 SINE Alu 1 142 -6 8 1137 408 71 0 0 chr11 72383926 72383982 -49459874 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1137 308 268 14 0 chr11 72384917 72384987 -49458869 - RSINE1 SINE B4 -1 164 94 8 1137 1470 194 208 134 chr11 72384987 72385242 -49458614 + RMER21A LTR ERV1 1 356 -591 8 1137 3248 43 13 0 chr11 72385242 72385633 -49458223 + MTA_Mm LTR MaLR 1 396 0 8 1137 1470 194 208 134 chr11 72385633 72385858 -49457998 + RMER21A LTR ERV1 357 525 -422 8 1137 246 32 0 0 chr11 72385858 72385889 -49457967 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1137 1470 194 208 134 chr11 72385889 72385930 -49457926 + RMER21A LTR ERV1 526 562 -385 8 1137 206 159 23 0 chr11 72385953 72385997 -49457859 + T-rich Low_complexity Low_complexity 5 49 0 8 1137 843 165 14 14 chr11 72386855 72386996 -49456860 - B1_Mus2 SINE Alu 0 147 7 8 1137 580 178 93 29 chr11 72387058 72387197 -49456659 + B1_Mus1 SINE Alu 1 148 0 8 1137 26 30 0 0 chr11 72387331 72387364 -49456492 + AT_rich Low_complexity Low_complexity 1 33 0 8 1137 1034 178 48 24 chr11 72387422 72387629 -49456227 + MTC LTR MaLR 2 213 -208 8 1137 610 110 183 17 chr11 72387618 72387738 -49456118 + B1_Mus1 SINE Alu 9 148 0 8 1137 806 134 81 70 chr11 72387772 72387957 -49455899 + RMER17B LTR ERVK 183 369 -589 8 1137 180 0 0 0 chr11 72387966 72387986 -49455870 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1137 1440 57 11 0 chr11 72387987 72388163 -49455693 - B2_Mm2 SINE B2 -15 180 3 8 1137 838 178 0 0 chr11 72388196 72388331 -49455525 - B1_Mur4 SINE Alu 0 150 16 8 1137 275 257 114 38 chr11 72388378 72388483 -49455373 - PB1D10 SINE Alu -4 113 1 8 1137 393 58 0 0 chr11 72388602 72388654 -49455202 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1137 706 286 20 5 chr11 72388704 72388908 -49454948 - B3 SINE B2 -9 207 1 8 1137 24 32 0 0 chr11 72388914 72388945 -49454911 + AT_rich Low_complexity Low_complexity 1 31 0 8 1137 435 240 10 0 chr11 72388994 72389094 -49454762 + PB1D10 SINE Alu 1 101 -16 8 1137 26 30 0 0 chr11 72389113 72389146 -49454710 + AT_rich Low_complexity Low_complexity 1 33 0 8 1137 522 299 35 0 chr11 72389166 72389310 -49454546 - RSINE1 SINE B4 -13 152 4 8 1137 399 45 30 15 chr11 72389334 72389401 -49454455 + (CCA)n Simple_repeat Simple_repeat 2 69 0 8 1137 199 177 32 0 chr11 72390658 72390720 -49453136 + GA-rich Low_complexity Low_complexity 1 64 0 8 1137 542 188 27 95 chr11 72391110 72391257 -49452599 - B1_Mur1 SINE Alu -12 137 1 8 1137 334 284 0 19 chr11 72391303 72391407 -49452449 - B4A SINE B4 -5 287 186 8 1137 225 0 0 0 chr11 72391602 72391627 -49452229 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1137 1724 11 11 0 chr11 72392372 72392563 -49451293 - B2_Mm1t SINE B2 0 193 1 8 1137 921 129 13 52 chr11 72392611 72392758 -49451098 + B1_Mur4 SINE Alu 1 142 -8 8 1137 522 0 0 0 chr11 72392758 72392816 -49451040 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 8 1137 1405 80 27 0 chr11 72392919 72393107 -49450749 + B2_Mm1t SINE B2 1 193 0 8 1137 355 197 56 0 chr11 72393455 72393526 -49450330 + B4A SINE B4 4 78 -214 8 1137 259 227 0 0 chr11 72393522 72393566 -49450290 - B4A SINE B4 -166 126 83 8 1137 234 191 0 0 chr11 72393584 72393631 -49450225 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1137 539 191 35 0 chr11 72394159 72394274 -49449582 - B1_Mus1 SINE Alu -18 130 12 8 1137 648 244 8 0 chr11 72394274 72394405 -49449451 + B1_Mur1 SINE Alu 10 141 -8 8 1137 217 258 0 33 chr11 72394417 72394475 -49449381 + A-rich Low_complexity Low_complexity 2 58 0 8 1137 1246 48 0 0 chr11 72394475 72394621 -49449235 + B1_Mm SINE Alu 2 147 0 8 1137 217 258 0 33 chr11 72394621 72394654 -49449202 + A-rich Low_complexity Low_complexity 59 90 0 8 1137 781 176 21 7 chr11 72394657 72394800 -49449056 + B1_Mm SINE Alu 2 146 -1 8 1137 463 242 157 13 chr11 72394836 72394995 -49448861 + B3A SINE B2 1 182 -16 8 1137 22 56 0 0 chr11 72395067 72395103 -49448753 + AT_rich Low_complexity Low_complexity 1 36 0 8 1137 799 113 19 107 chr11 72396228 72396387 -49447469 - B1_Mur1 SINE Alu 0 149 5 8 1137 763 272 0 0 chr11 72396421 72396568 -49447288 - RSINE1 SINE B4 -16 149 3 8 1137 515 222 183 12 chr11 72396652 72396816 -49447040 + B3A SINE B2 1 192 -6 8 1137 709 152 84 35 chr11 72397012 72397155 -49446701 + B1_Mur4 SINE Alu 1 150 0 8 1137 531 45 0 0 chr11 72397167 72397233 -49446623 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 8 1137 950 186 82 34 chr11 72397248 72397454 -49446402 + B3 SINE B2 1 216 0 8 1137 625 244 33 43 chr11 72397467 72397651 -49446205 + B3A SINE B2 2 183 -15 8 1137 337 208 88 10 chr11 72397854 72397956 -49445900 + PB1D7 SINE Alu 3 112 -8 9 1137 340 322 28 38 chr11 72398186 72398399 -49445457 + L1M5 LINE L1 5611 5821 -358 9 1137 365 181 343 0 chr11 72398483 72398588 -49445268 - B1_Mus1 SINE Alu -3 145 5 9 1137 630 37 0 0 chr11 72398760 72398842 -49445014 - B1_Mm SINE Alu 0 147 66 9 1137 267 181 34 57 chr11 72398845 72398933 -49444923 + L1MA10 LINE L1 6225 6310 -24 9 1137 21 57 0 0 chr11 72399343 72399378 -49444478 + AT_rich Low_complexity Low_complexity 1 35 0 9 1137 1222 61 0 0 chr11 72399596 72399744 -49444112 - B1_Mus1 SINE Alu 0 148 1 9 1137 206 246 17 17 chr11 72399914 72399972 -49443884 - MIRb SINE MIR -92 176 119 9 1137 789 122 72 0 chr11 72400251 72400390 -49443466 + B1_Mur3 SINE Alu 1 149 0 9 1137 1234 28 14 0 chr11 72400506 72400651 -49443205 + B1_Mm SINE Alu 1 147 0 9 1137 747 213 147 16 chr11 72400662 72400853 -49443003 - B3 SINE B2 0 216 1 9 1137 237 209 0 0 chr11 72400948 72401015 -49442841 + CT-rich Low_complexity Low_complexity 6 72 0 9 1137 432 242 42 0 chr11 72401121 72401216 -49442640 - B1_Mur1 SINE Alu -2 147 49 9 1137 785 208 140 131 chr11 72401226 72401569 -49442287 + MTE2a LTR MaLR 19 364 -15 9 1137 775 197 147 16 chr11 72401994 72402185 -49441671 - B3 SINE B2 0 216 1 9 1137 274 208 57 0 chr11 72402268 72402321 -49441535 - B1F SINE Alu -82 67 12 9 1137 287 265 0 56 chr11 72402276 72402348 -49441508 - ID_B1 SINE B4 -87 137 70 9 1137 473 202 146 8 chr11 72402351 72402481 -49441375 - B1F SINE Alu -1 148 1 9 1137 384 284 28 64 chr11 72403194 72403303 -49440553 + B1F2 SINE Alu 5 109 -40 9 1137 329 281 80 66 chr11 72403303 72403331 -49440525 + ID_B1 SINE B4 86 224 0 9 1137 400 234 0 0 chr11 72403345 72403422 -49440434 + ID_B1 SINE B4 94 170 -54 9 1137 653 297 46 64 chr11 72403449 72403730 -49440126 + B4A SINE B4 1 276 -16 9 1137 183 114 0 0 chr11 72403771 72403806 -49440050 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1137 290 244 152 6 chr11 72404105 72404217 -49439639 + PB1 SINE Alu 3 116 -1 9 1137 543 179 0 0 chr11 72404218 72404324 -49439532 + GA-rich Low_complexity Low_complexity 3 108 0 9 1137 276 149 0 0 chr11 72404689 72404736 -49439120 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 9 1137 686 232 81 29 chr11 72404752 72404925 -49438931 + B3A SINE B2 1 182 -16 9 1137 545 235 54 24 chr11 72405096 72405262 -49438594 - MTEb LTR MaLR -17 362 192 9 1137 189 0 0 0 chr11 72405271 72405292 -49438564 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 1137 552 237 72 0 chr11 72405333 72405472 -49438384 - B3 SINE B2 -6 210 62 9 1137 383 328 17 0 chr11 72405533 72405652 -49438204 - MTEb LTR MaLR -206 173 53 9 1137 362 238 28 28 chr11 72405937 72406045 -49437811 + L1M4 LINE L1 4926 5033 -1113 9 1137 261 322 0 129 chr11 72406120 72406179 -49437677 - ID_B1 SINE B4 -5 219 99 9 1137 277 278 0 100 chr11 72406179 72406259 -49437597 - PB1D10 SINE Alu -28 89 18 9 1137 351 172 0 30 chr11 72406296 72406362 -49437494 + B1_Mur2 SINE Alu 86 149 0 9 1137 335 268 64 104 chr11 72406456 72406581 -49437275 - B1F SINE Alu 0 120 1 9 1137 435 170 199 43 chr11 72406804 72406945 -49436911 + B3A SINE B2 1 163 -35 9 1137 494 174 0 0 chr11 72407006 72407092 -49436764 + B1_Mus2 SINE Alu 33 118 -29 9 1137 223 200 0 57 chr11 72407138 72407191 -49436665 + B4 SINE B4 80 129 -163 9 1137 300 208 160 40 chr11 72407155 72407255 -49436601 + PB1D9 SINE Alu 9 120 0 9 1137 765 178 213 0 chr11 72407289 72407463 -49436393 + B3 SINE B2 5 215 -1 9 1137 322 164 0 0 chr11 72408244 72408299 -49435557 - B1F SINE Alu -28 121 67 9 1137 297 224 271 0 chr11 72408270 72408377 -49435479 - ID_B1 SINE B4 -22 202 67 9 1137 210 175 25 0 chr11 72408764 72408804 -49435052 + T-rich Low_complexity Low_complexity 4 44 0 9 1137 291 332 93 5 chr11 72409145 72409339 -49434517 + L2 LINE L2 2003 2213 -1206 9 1137 204 40 0 0 chr11 72409362 72409387 -49434469 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 9 1137 575 262 14 7 chr11 72409420 72409562 -49434294 + B1_Mur1 SINE Alu 5 147 -2 9 1137 34 0 0 0 chr11 72409566 72409600 -49434256 + AT_rich Low_complexity Low_complexity 1 34 0 9 1137 25 65 0 0 chr11 72409800 72409846 -49434010 + AT_rich Low_complexity Low_complexity 1 46 0 9 1137 983 162 0 0 chr11 72410176 72410324 -49433532 - B1_Mur4 SINE Alu -1 149 2 9 1137 210 71 0 0 chr11 72410336 72410364 -49433492 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1137 1604 32 0 16 chr11 72410374 72410564 -49433292 - B2_Mm1t SINE B2 -5 188 2 9 1137 207 0 0 0 chr11 72410645 72410668 -49433188 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1137 698 174 0 0 chr11 72410668 72410789 -49433067 - B1_Mur1 SINE Alu -11 138 18 9 1137 271 262 139 46 chr11 72411078 72411186 -49432670 + PB1D9 SINE Alu 3 120 0 9 1137 241 293 0 0 chr11 72411227 72411285 -49432571 + RSINE1 SINE B4 73 130 -35 9 1137 210 71 0 0 chr11 72411286 72411314 -49432542 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 9 1137 255 358 0 39 chr11 72411765 72411893 -49431963 - Lx8 LINE L1 -313 7160 7038 9 1137 386 285 30 30 chr11 72412133 72412267 -49431589 - B1_Mur2 SINE Alu -8 141 8 9 1137 369 287 109 27 chr11 72412307 72412454 -49431402 - RSINE1 SINE B4 -5 160 2 9 1137 575 200 54 54 chr11 72412478 72412626 -49431230 - B1_Mur2 SINE Alu -1 148 1 9 1137 269 300 62 115 chr11 72412483 72412537 -49431319 - ID_B1 SINE B4 -6 218 124 9 1137 302 236 0 168 chr11 72412537 72412644 -49431212 - MT2B LTR ERVL -361 240 152 9 1137 269 300 62 115 chr11 72412644 72412709 -49431147 - ID_B1 SINE B4 -6 123 5 9 1137 501 220 0 199 chr11 72412818 72412994 -49430862 + B1_Mur1 SINE Alu 1 141 -8 9 1137 614 277 22 6 chr11 72413009 72413187 -49430669 + B3 SINE B2 24 204 -12 9 1137 321 216 99 33 chr11 72413205 72413296 -49430560 - B3 SINE B2 -11 205 109 9 1137 36 0 0 0 chr11 72413340 72413376 -49430480 + AT_rich Low_complexity Low_complexity 1 36 0 9 1137 547 130 0 188 chr11 72413445 72413531 -49430325 - B2_Mm1t SINE B2 -85 108 35 9 1137 1038 57 41 35 chr11 72413531 72413676 -49430180 - B1_Mus2 SINE Alu 0 147 2 9 1137 547 130 0 188 chr11 72413676 72413722 -49430134 - B2_Mm1t SINE B2 -159 34 1 9 1137 219 69 0 0 chr11 72413741 72413770 -49430086 + (TATG)n Simple_repeat Simple_repeat 4 32 0 9 1137 670 190 50 14 chr11 72413784 72413923 -49429933 - B1_Mur2 SINE Alu 0 149 6 9 1137 27 0 0 0 chr11 72413927 72413954 -49429902 + AT_rich Low_complexity Low_complexity 1 27 0 9 1137 583 248 16 0 chr11 72413955 72414084 -49429772 - B3 SINE B2 -9 207 77 9 1137 233 330 29 39 chr11 72414163 72414267 -49429589 + HAL1 LINE L1 1815 1917 -590 9 1137 258 81 0 0 chr11 72414622 72414659 -49429197 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 9 1137 596 206 0 9 chr11 72414685 72414793 -49429063 - RSINE1 SINE B4 -42 123 17 9 1137 359 282 0 12 chr11 72414989 72415075 -49428781 + ID SINE ID 2 86 -138 9 1137 333 302 0 9 chr11 72415075 72415096 -49428760 + BC1_Mm scRNA scRNA 2 107 -45 9 1137 849 171 20 7 chr11 72415122 72415269 -49428587 - B1_Mur3 SINE Alu 0 149 1 9 1137 264 53 0 0 chr11 72415305 72415343 -49428513 - B1_Mur4 SINE Alu 0 150 113 9 1137 729 160 8 8 chr11 72415358 72415478 -49428378 + PB1D9 SINE Alu 1 120 0 9 1137 740 255 66 0 chr11 72415487 72415683 -49428173 - B3 SINE B2 -6 210 2 9 1137 695 201 0 48 chr11 72415749 72415895 -49427961 - ID_B1 SINE B4 -4 220 82 9 1137 348 200 86 0 chr11 72416001 72416106 -49427750 + Arthur1C DNA Tip100 150 263 -100 9 1137 719 213 43 0 chr11 72416121 72416262 -49427594 + B1_Mur4 SINE Alu 2 148 -2 9 1137 907 204 34 58 chr11 72416281 72416489 -49427367 - B3 SINE B2 -12 204 2 9 1137 695 298 44 106 chr11 72416665 72416917 -49426939 + L1MA9 LINE L1 4778 5029 -1114 9 1137 704 230 29 0 chr11 72416917 72417056 -49426800 - B1_Mur1 SINE Alu -5 144 2 9 1137 695 298 44 106 chr11 72417056 72417303 -49426553 + L1MA9 LINE L1 5030 5246 -897 9 1137 1348 92 21 5 chr11 72417303 72417489 -49426367 - B2_Mm2 SINE B2 -5 190 2 9 1137 213 39 0 0 chr11 72417532 72417558 -49426298 + (GGA)n Simple_repeat Simple_repeat 2 27 0 9 1137 354 235 11 0 chr11 72417589 72417668 -49426188 - B1_Mur4 SINE Alu -64 83 2 9 1137 306 266 114 10 chr11 72417734 72417852 -49426004 + L1MA9 LINE L1 5303 5491 -809 9 1137 478 324 66 0 chr11 72417853 72417989 -49425867 + RSINE1 SINE B4 8 152 -13 9 1137 343 211 103 26 chr11 72418004 72418121 -49425735 + L1M4 LINE L1 5484 5609 -565 9 1137 647 216 0 15 chr11 72418121 72418257 -49425599 + B1_Mur4 SINE Alu 16 149 -1 9 1137 486 256 82 19 chr11 72418312 72418471 -49425385 + B3 SINE B2 48 216 0 9 1137 360 229 118 54 chr11 72418474 72418649 -49425207 + L1MA9 LINE L1 5812 5995 -305 9 1137 428 301 48 68 chr11 72418781 72418821 -49425035 + B3 SINE B2 1 41 -175 9 1137 1517 67 10 5 chr11 72418821 72419015 -49424841 + B2_Mm2 SINE B2 1 195 0 9 1137 428 301 48 68 chr11 72419015 72419181 -49424675 + B3 SINE B2 42 203 -13 9 1137 752 167 50 14 chr11 72419219 72419359 -49424497 + B1_Mur3 SINE Alu 5 149 0 9 1137 186 43 0 0 chr11 72419370 72419393 -49424463 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1137 1235 122 37 0 chr11 72419735 72419923 -49423933 + B2_Mm2 SINE B2 1 195 0 9 1137 224 257 135 0 chr11 72420144 72420218 -49423638 - ID_B1 SINE B4 -49 175 92 9 1137 21 0 0 0 chr11 72421141 72421162 -49422694 + GC_rich Low_complexity Low_complexity 1 21 0 9 1137 382 192 13 13 chr11 72422543 72422622 -49421234 + B1_Mus2 SINE Alu 69 147 0 1 1137 197 111 44 0 chr11 72422898 72422943 -49420913 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1137 443 198 51 20 chr11 72422944 72423042 -49420814 - B1_Mur4 SINE Alu -15 135 35 1 1137 547 223 132 6 chr11 72423568 72423735 -49420121 - MER20 DNA MER1_type 0 219 32 1 1137 570 167 242 0 chr11 72423996 72424116 -49419740 + B1_Mur2 SINE Alu 1 149 0 1 1137 195 275 49 64 chr11 72424378 72424503 -49419353 - MIRc SINE MIR -36 172 34 1 1137 918 208 9 19 chr11 72424578 72424789 -49419067 - B3 SINE B2 0 216 8 1 1137 236 371 0 10 chr11 72424818 72424916 -49418940 + ID_B1 SINE B4 80 176 -48 1 1137 362 256 21 1 chr11 72424828 72424925 -49418931 + PB1D9 SINE Alu 9 107 -13 1 1137 451 216 52 0 chr11 72425048 72425145 -49418711 + B3 SINE B2 115 216 0 1 1137 627 280 113 10 chr11 72425302 72425497 -49418359 - ID_B1 SINE B4 -4 220 6 1 1137 1073 97 0 0 chr11 72425653 72425808 -49418048 + B2_Mm2 SINE B2 1 155 -40 1 1137 360 0 0 0 chr11 72425808 72425848 -49418008 + (TAA)n Simple_repeat Simple_repeat 3 42 0 1 1137 312 167 92 53 chr11 72426009 72426085 -49417771 - ID4_ SINE ID -3 80 2 1 1137 871 243 11 0 chr11 72426237 72426414 -49417442 + B3 SINE B2 1 179 -37 1 1137 236 197 79 32 chr11 72426475 72426538 -49417318 + ID4 SINE ID 6 71 -12 1 1137 359 328 112 0 chr11 72426677 72426802 -49417054 - ID_B1 SINE B4 -78 146 8 1 1137 246 171 73 73 chr11 72426838 72426920 -49416936 - B1_Mur4 SINE Alu 0 150 69 1 1137 449 299 35 117 chr11 72427092 72427195 -49416661 - B3A SINE B2 -16 182 86 1 1137 1057 83 0 14 chr11 72427195 72427333 -49416523 + B1_Mus2 SINE Alu 1 138 -9 1 1137 243 0 0 0 chr11 72427333 72427360 -49416496 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1137 449 299 35 117 chr11 72427368 72427461 -49416395 - B3A SINE B2 -113 85 2 1 1137 881 104 0 59 chr11 72427678 72427831 -49416025 - B2_Mm2 SINE B2 -25 170 27 1 1137 243 0 0 0 chr11 72427846 72427873 -49415983 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1 1137 343 117 12 33 chr11 72427881 72427954 -49415902 - B2_Mm2 SINE B2 -95 121 47 1 1137 1028 68 48 0 chr11 72427999 72428146 -49415710 - B2_Mm1t SINE B2 -39 154 1 1 1137 742 225 7 0 chr11 72428371 72428513 -49415343 - B1_Mur1 SINE Alu 0 149 7 1 1137 282 200 0 0 chr11 72428772 72428832 -49415024 + L1MD LINE L1 5107 5166 -980 1 1137 620 265 60 94 chr11 72428866 72429099 -49414757 + B4A SINE B4 2 226 -66 1 1137 32 0 0 0 chr11 72429286 72429318 -49414538 + AT_rich Low_complexity Low_complexity 1 32 0 1 1137 337 254 22 80 chr11 72429632 72429769 -49414087 - RSINE1 SINE B4 -26 139 11 1 1137 1061 136 116 43 chr11 72429783 72429990 -49413866 + URR1B DNA MER1_type 4 225 0 1 1137 764 238 74 98 chr11 72430018 72430232 -49413624 + L1MD LINE L1 5265 5477 -882 1 1137 750 73 316 22 chr11 72430232 72430371 -49413485 + B2_Mm2 SINE B2 2 181 -14 1 1137 764 238 74 98 chr11 72430371 72430492 -49413364 + L1MD LINE L1 5478 5592 -767 1 1137 466 198 0 0 chr11 72430516 72430597 -49413259 - ID_B1 SINE B4 -56 168 88 1 1137 1172 102 39 6 chr11 72430649 72430827 -49413029 - B2_Mm2 SINE B2 -10 185 2 1 1137 22 0 0 0 chr11 72430849 72430871 -49412985 + AT_rich Low_complexity Low_complexity 1 22 0 1 1137 323 315 0 26 chr11 72430874 72430988 -49412868 - RSINE1 SINE B4 -2 163 53 1 1137 593 139 200 24 chr11 72431039 72431164 -49412692 - B1_Mus2 SINE Alu 0 147 1 1 1137 285 280 30 10 chr11 72431165 72431266 -49412590 - L1M3 LINE L1 -442 5729 5627 1 1137 471 252 120 16 chr11 72431266 72431391 -49412465 - B1_Mur1 SINE Alu 0 149 12 1 1137 207 0 0 0 chr11 72431422 72431445 -49412411 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1137 1199 48 7 0 chr11 72431452 72431598 -49412258 - B1_Mus2 SINE Alu 0 147 1 1 1137 1395 212 168 3 chr11 72432255 72432643 -49411213 - MT2A LTR ERVL -81 452 1 1 1137 2071 218 101 30 chr11 72432648 72432779 -49411077 - MERVL_2A-int LTR ERVL -903 4858 4725 1 1137 1173 50 0 0 chr11 72432779 72432918 -49410938 - B1_Mm SINE Alu -8 139 1 1 1137 2071 218 101 30 chr11 72432918 72433312 -49410544 - MERVL_2A-int LTR ERVL -1037 4724 4297 1 1137 1763 191 96 47 chr11 72433312 72433800 -49410056 + MTC-int LTR MaLR 603 1114 -144 1 1137 1114 62 14 0 chr11 72433818 72433962 -49409894 - B1_Mus2 SINE Alu 0 147 2 1 1137 824 128 0 35 chr11 72433976 72434121 -49409735 - B1_Mus1 SINE Alu 0 148 9 1 1137 450 0 0 0 chr11 72434139 72434189 -49409667 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 1 1137 465 90 0 0 chr11 72434350 72434417 -49409439 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 1 1137 623 228 16 0 chr11 72434417 72434540 -49409316 - B1_Mur4 SINE Alu -17 133 9 1 1137 311 264 72 72 chr11 72434421 72434560 -49409296 - B4A SINE B4 -72 220 82 1 1137 1238 34 0 0 chr11 72434571 72434718 -49409138 - B1_Mm SINE Alu 0 147 1 1 1137 1846 162 131 27 chr11 72434889 72435294 -49408562 - RMER19C LTR ERVK 0 611 165 1 1137 1391 66 38 0 chr11 72435306 72435489 -49408367 + B2_Mm1t SINE B2 2 191 -2 1 1137 37 81 0 0 chr11 72436151 72436237 -49407619 + AT_rich Low_complexity Low_complexity 1 86 0 1 1137 420 20 0 0 chr11 72436259 72436308 -49407548 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1137 306 155 52 0 chr11 72436309 72436367 -49407489 - B3A SINE B2 -73 125 65 1 1137 8630 35 1 1 chr11 72436368 72437799 -49406057 - L1Md_F2 LINE L1 0 6582 5153 1 1137 425 173 26 13 chr11 72437809 72437885 -49405971 - B3 SINE B2 -139 77 1 1 1137 778 234 25 30 chr11 72437895 72438093 -49405763 - B3 SINE B2 -16 200 4 1 1137 699 182 22 0 chr11 72438116 72438253 -49405603 - B1_Mus1 SINE Alu 0 148 9 1 1137 801 200 0 0 chr11 72438275 72438425 -49405431 - B1_Mur4 SINE Alu 0 150 1 1 1137 673 243 53 21 chr11 72438459 72438648 -49405208 - B3A SINE B2 -1 197 3 1 1137 817 169 300 55 chr11 72438898 72439191 -49404665 + RMER6B LTR ERVK 1 364 -97 1 1137 387 0 0 0 chr11 72439199 72439242 -49404614 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1137 304 89 22 0 chr11 72439249 72439294 -49404562 + MYSERV6-int LTR ERVK 6630 6675 -2284 1 1137 348 161 18 0 chr11 72439267 72439323 -49404533 - MYSERV6-int LTR ERVK -2287 6672 6616 1 1137 516 38 0 59 chr11 72439757 72439842 -49404014 - L1Md_F2 LINE L1 -2 6580 6501 1 1137 338 238 45 188 chr11 72439876 72440052 -49403804 + B3A SINE B2 2 152 -46 1 1137 21 36 0 0 chr11 72440071 72440099 -49403757 + AT_rich Low_complexity Low_complexity 1 28 0 1 1137 461 235 89 5 chr11 72440230 72440407 -49403449 - Lx9 LINE L1 -1531 5942 5760 1 1137 741 190 28 14 chr11 72440648 72440792 -49403064 + B1_Mur4 SINE Alu 5 150 0 1 1137 743 241 63 6 chr11 72440827 72441002 -49402854 - B3 SINE B2 -31 185 1 1 1137 373 247 0 20 chr11 72441055 72441154 -49402702 - B3 SINE B2 -118 98 2 1 1137 380 226 18 62 chr11 72441161 72441274 -49402582 - B1F SINE Alu -41 108 1 1 1137 1189 55 0 7 chr11 72441540 72441688 -49402168 + B1_Mm SINE Alu 1 147 0 1 1137 231 263 52 21 chr11 72442068 72442087 -49401769 - ID_B1 SINE B4 -1 223 124 1 1137 486 103 13 0 chr11 72442087 72442165 -49401691 - B1_Mur4 SINE Alu -28 122 44 1 1137 232 200 77 39 chr11 72442102 72442180 -49401676 - RLTR25B LTR ERVK -519 509 429 1 1137 741 208 0 0 chr11 72442198 72442328 -49401528 - B3 SINE B2 -86 130 1 1 1137 367 211 140 50 chr11 72442370 72442470 -49401386 + RSINE1 SINE B4 57 165 0 1 1137 1092 109 0 18 chr11 72443030 72443174 -49400682 + B2_Mm2 SINE B2 2 145 -50 1 1137 324 0 0 0 chr11 72443174 72443210 -49400646 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1137 1092 109 0 18 chr11 72443210 72443233 -49400623 + B2_Mm2 SINE B2 146 166 -29 1 1137 415 145 0 50 chr11 72443240 72443320 -49400536 + B1_Mur2 SINE Alu 73 148 -1 1 1137 26 98 0 0 chr11 72443512 72443594 -49400262 + AT_rich Low_complexity Low_complexity 1 82 0 1 1137 370 264 111 8 chr11 72443731 72443857 -49399999 - B1F2 SINE Alu -9 140 2 1 1137 1210 40 0 0 chr11 72444033 72444181 -49399675 - B1_Mus1 SINE Alu 0 148 1 1 1137 581 196 2 45 chr11 72444185 72444314 -49399542 - B3A SINE B2 -50 145 31 1 1137 330 138 14 35 chr11 72444355 72444465 -49399391 - B2_Mm2 SINE B2 -9 186 47 1 1137 1298 96 11 0 chr11 72444512 72444689 -49399167 - B2_Mm1t SINE B2 -14 179 1 1 1137 947 208 15 10 chr11 72444990 72445189 -49398667 + B3 SINE B2 4 203 -13 1 1137 525 226 14 43 chr11 72445714 72445853 -49398003 - B1_Mur2 SINE Alu -14 135 1 1 1137 434 241 34 25 chr11 72445871 72445990 -49397866 - B3 SINE B2 0 216 97 1 1137 183 42 0 0 chr11 72446102 72446126 -49397730 + (TGGG)n Simple_repeat Simple_repeat 1 24 0 1 1137 573 232 21 48 chr11 72446128 72446273 -49397583 - B1_Mm SINE Alu -6 141 1 1 1137 593 294 35 35 chr11 72446304 72446473 -49397383 - B4A SINE B4 -72 220 52 1 1137 739 293 192 3 chr11 72446556 72446895 -49396961 + Tigger7 DNA MER2_type 1 403 -2088 1 1137 1106 94 52 17 chr11 72446890 72447064 -49396792 - B2_Mm2 SINE B2 -14 181 2 1 1137 222 215 0 0 chr11 72447065 72447144 -49396712 + T-rich Low_complexity Low_complexity 1 79 0 1 1137 764 193 21 7 chr11 72447174 72447315 -49396541 + B1_Mus1 SINE Alu 6 148 0 1 1137 393 285 63 35 chr11 72447328 72447470 -49396386 + Tigger7 DNA MER2_type 407 552 -1939 1 1137 272 289 26 13 chr11 72448173 72448250 -49395606 - L2a LINE L2 -321 3105 3028 1 1137 274 317 38 113 chr11 72448294 72448479 -49395377 - L2a LINE L2 -508 2911 2741 1 1137 227 274 55 28 chr11 72448491 72448600 -49395256 - L2a LINE L2 -755 2664 2553 1 1137 723 233 30 109 chr11 72448600 72448802 -49395054 - B3A SINE B2 -4 194 9 1 1137 535 327 224 35 chr11 72448814 72449658 -49394198 - L2a LINE L2 -861 2558 1556 1 1137 300 346 136 47 chr11 72449745 72449772 -49394084 + B3 SINE B2 1 24 -192 1 1137 1246 34 0 0 chr11 72449772 72449920 -49393936 + B1_Mus1 SINE Alu 1 148 0 1 1137 300 346 136 47 chr11 72449920 72450083 -49393773 + B3 SINE B2 25 208 -8 1 1137 243 0 0 0 chr11 72450522 72450549 -49393307 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1137 1013 76 0 0 chr11 72450549 72450680 -49393176 - B1_Mm SINE Alu 0 147 17 1 1137 436 234 52 105 chr11 72450594 72450747 -49393109 - MT2B LTR ERVL -344 257 113 1 1137 667 311 20 30 chr11 72451001 72451200 -49392656 + B3A SINE B2 1 197 -1 1 1137 994 203 54 15 chr11 72451208 72451413 -49392443 + B3 SINE B2 1 213 -3 1 1137 661 250 27 34 chr11 72451718 72451867 -49391989 + RSINE1 SINE B4 14 161 -4 1 1137 26 64 0 0 chr11 72452184 72452231 -49391625 + AT_rich Low_complexity Low_complexity 1 47 0 1 1137 475 248 38 9 chr11 72452289 72452395 -49391461 + B1_Mur1 SINE Alu 33 141 -8 1 1137 365 247 0 82 chr11 72452545 72452642 -49391214 + MTEb LTR MaLR 186 274 -105 1 1137 1257 63 97 0 chr11 72452650 72452825 -49391031 - B2_Mm2 SINE B2 -2 193 2 1 1137 241 325 24 36 chr11 72452828 72452911 -49390945 + MTEb LTR MaLR 243 324 -55 1 1137 27 29 0 0 chr11 72452961 72452995 -49390861 + AT_rich Low_complexity Low_complexity 1 34 0 1 1137 243 0 0 0 chr11 72453055 72453082 -49390774 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1137 377 285 44 51 chr11 72453102 72453239 -49390617 - B1_Mur1 SINE Alu -12 137 2 1 1137 415 311 60 12 chr11 72453248 72453414 -49390442 - B4A SINE B4 -113 179 6 1 1137 243 0 0 0 chr11 72453442 72453469 -49390387 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1137 1424 153 104 22 chr11 72453475 72453743 -49390113 - ORR1B2 LTR MaLR -14 353 64 1 1137 241 317 81 40 chr11 72453778 72453812 -49390044 - B4A SINE B4 -113 179 145 1 1137 1236 96 26 5 chr11 72453812 72454001 -49389855 - B2_Mm1a SINE B2 0 193 1 1 1137 241 317 81 40 chr11 72454001 72454114 -49389742 - B4A SINE B4 -148 144 27 1 1137 364 217 43 0 chr11 72454183 72454252 -49389604 - ID_B1 SINE B4 -7 217 146 1 1137 740 161 62 0 chr11 72454278 72454408 -49389448 - B1_Mur4 SINE Alu 0 150 13 1 1137 424 243 62 62 chr11 72454408 72454421 -49389435 - ID_B1 SINE B4 0 222 80 1 1137 618 175 82 16 chr11 72454465 72454587 -49389269 - B3 SINE B2 -86 130 1 1 1137 612 248 44 22 chr11 72454587 72454723 -49389133 - B1_Mur1 SINE Alu -1 148 10 1 1137 316 290 175 35 chr11 72454758 72454901 -49388955 - RSINE1 SINE B4 -1 164 2 1 1137 308 274 20 31 chr11 72455083 72455181 -49388675 - PB1D10 SINE Alu -20 97 1 1 1137 290 263 67 48 chr11 72455092 72455196 -49388660 - MT2B LTR ERVL -352 249 144 1 1137 383 241 16 27 chr11 72455261 72455393 -49388463 - L1M6 LINE L1 -3834 3173 3072 1 1137 261 0 0 0 chr11 72455498 72455527 -49388329 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1137 1129 65 0 0 chr11 72455527 72455665 -49388191 - B1_Mus1 SINE Alu -10 138 1 1 1137 22 56 0 0 chr11 72455673 72455709 -49388147 + AT_rich Low_complexity Low_complexity 1 36 0 1 1137 1627 36 0 0 chr11 72455724 72455917 -49387939 - B2_Mm1t SINE B2 0 193 1 1 1137 366 264 52 109 chr11 72455982 72456156 -49387700 - MER104 DNA Tc2 -3 178 15 1 1137 997 71 42 7 chr11 72456313 72456455 -49387401 - B1_Mus2 SINE Alu 0 147 1 1 1137 876 261 109 27 chr11 72456455 72456843 -49387013 - L1M6 LINE L1 -4762 2340 1760 1 1137 872 170 0 26 chr11 72458399 72458550 -49385306 + B1_Mur3 SINE Alu 1 147 -2 1 1137 553 213 7 54 chr11 72458892 72459041 -49384815 - HAL1 LINE L1 -109 2398 2257 1 1137 1022 231 5 5 chr11 72459408 72459621 -49384235 - B3 SINE B2 -3 213 1 1 1137 1120 58 0 0 chr11 72459904 72460041 -49383815 + B1_Mus1 SINE Alu 2 138 -10 1 1137 34 42 0 0 chr11 72460354 72460402 -49383454 + AT_rich Low_complexity Low_complexity 1 48 0 1 1137 1543 47 5 0 chr11 72460495 72460685 -49383171 - B2_Mm1t SINE B2 -2 191 1 1 1137 378 233 10 122 chr11 72460901 72460999 -49382857 - PB1D7 SINE Alu -33 87 1 1 1137 298 266 117 95 chr11 72460999 72461038 -49382818 - ID_B1 SINE B4 -30 194 55 1 1137 1259 274 44 39 chr11 72461049 72461462 -49382394 - RMER15 LTR ERVL -134 441 27 1 1137 415 289 45 30 chr11 72461818 72461950 -49381906 - ORR1E LTR MaLR -6 353 220 1 1137 511 292 23 8 chr11 72461965 72462096 -49381760 - ORR1E LTR MaLR -222 137 5 1 1137 586 234 122 20 chr11 72462101 72462249 -49381607 - RSINE1 SINE B4 0 165 3 1 1137 762 225 0 0 chr11 72462301 72462479 -49381377 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 1137 1136 130 0 0 chr11 72462488 72462650 -49381206 - B2_Mm2 SINE B2 -30 165 4 1 1137 224 269 0 55 chr11 72462788 72462843 -49381013 - ID4_ SINE ID 0 83 32 1 1137 256 238 0 31 chr11 72462918 72462983 -49380873 - B1F SINE Alu -5 144 82 1 1137 230 240 187 65 chr11 72462983 72463022 -49380834 - ID_B1 SINE B4 -2 219 103 1 1137 625 226 112 150 chr11 72463077 72463264 -49380592 - B3 SINE B2 -34 182 1 1 1137 472 202 131 0 chr11 72463298 72463397 -49380459 + PB1D9 SINE Alu 2 113 -7 1 1137 22 0 0 0 chr11 72463397 72463419 -49380437 + AT_rich Low_complexity Low_complexity 1 22 0 1 1137 436 286 265 23 chr11 72463449 72463656 -49380200 - B4 SINE B4 -3 289 33 1 1137 743 144 40 0 chr11 72463926 72464051 -49379805 - B1_Mur4 SINE Alu -20 130 1 1 1137 28 0 0 0 chr11 72464054 72464082 -49379774 + AT_rich Low_complexity Low_complexity 1 28 0 1 1137 202 213 0 41 chr11 72464298 72464347 -49379509 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1 1137 426 345 20 26 chr11 72464513 72464665 -49379191 - RSINE1 SINE B4 0 165 15 1 1137 556 239 64 48 chr11 72464673 72464923 -49378933 - L1M1 LINE L1 -484 5816 5563 1 1137 345 217 46 46 chr11 72465296 72465383 -49378473 - ORR1E LTR MaLR 0 379 293 1 1137 239 294 46 51 chr11 72465397 72465594 -49378262 + RMER17D LTR ERVK 384 579 -310 1 1137 511 326 99 37 chr11 72465490 72465770 -49378086 - ORR1E LTR MaLR -77 297 14 1 1137 698 154 138 0 chr11 72465931 72466054 -49377802 - B1_Mur3 SINE Alu -9 140 1 1 1137 647 212 133 21 chr11 72466073 72466261 -49377595 - B3 SINE B2 -7 209 1 1 1137 375 181 0 0 chr11 72466679 72466751 -49377105 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 1 1137 804 236 9 94 chr11 72466755 72466927 -49376929 - B3 SINE B2 0 216 50 1 1137 1877 74 11 11 chr11 72466927 72467199 -49376657 - L1_Mus3 LINE L1 0 6638 6367 1 1137 804 236 9 94 chr11 72467199 72467250 -49376606 - B3 SINE B2 -167 49 12 1 1137 378 263 156 28 chr11 72467347 72467488 -49376368 + RSINE1 SINE B4 4 162 -3 1 1137 261 229 103 10 chr11 72467598 72467695 -49376161 - HAL1b LINE L1 -854 1155 1050 1 1137 756 269 146 4 chr11 72468430 72468669 -49375187 + B4A SINE B4 6 278 -14 1 1137 962 66 7 62 chr11 72469273 72469419 -49374437 - B1_Mus1 SINE Alu -10 138 1 1 1137 204 40 0 0 chr11 72469546 72469571 -49374285 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1137 1306 171 231 0 chr11 72469578 72469877 -49373979 - ORR1D1 LTR MaLR -4 370 3 1 1137 357 280 140 0 chr11 72470109 72470209 -49373647 + PB1D10 SINE Alu 4 117 0 1 1137 327 172 218 79 chr11 72470275 72470376 -49373480 + PB1D9 SINE Alu 6 120 0 1 1137 1582 52 0 0 chr11 72470394 72470587 -49373269 - B2_Mm1t SINE B2 0 193 1 1 1137 216 0 0 0 chr11 72470601 72470625 -49373231 + (CAT)n Simple_repeat Simple_repeat 2 25 0 1 1137 790 162 20 27 chr11 72470637 72470783 -49373073 - B1_Mus1 SINE Alu -2 146 2 1 1137 310 291 93 0 chr11 72471541 72471627 -49372229 + RSINE1 SINE B4 3 96 -69 1 1137 22 0 0 0 chr11 72471627 72471649 -49372207 + AT_rich Low_complexity Low_complexity 1 22 0 1 1137 662 138 18 18 chr11 72471656 72471767 -49372089 - B1_Mur4 SINE Alu -21 129 19 1 1137 487 314 31 68 chr11 72471834 72472186 -49371670 - L1MC5 LINE L1 -995 6966 6628 1 1137 23 33 0 0 chr11 72472186 72472216 -49371640 + AT_rich Low_complexity Low_complexity 1 30 0 1 1137 272 333 0 0 chr11 72472880 72472955 -49370901 + ID4_ SINE ID 5 79 -4 1 1137 301 354 0 10 chr11 72473158 72473255 -49370601 - L1MB5 LINE L1 -73 6101 6006 1 1137 504 279 109 7 chr11 72473391 72473528 -49370328 - B3A SINE B2 -4 194 44 1 1137 1162 101 30 0 chr11 72473549 72473718 -49370138 - B2_Mm2 SINE B2 -14 181 8 1 1137 271 282 57 0 chr11 72474039 72474129 -49369727 - PB1D9 SINE Alu -13 107 8 1 1137 406 352 80 0 chr11 72474574 72474736 -49369120 + B4A SINE B4 10 184 -108 1 1137 545 254 14 21 chr11 72475109 72475250 -49368606 - MTEb LTR MaLR 0 379 240 1 1137 381 292 25 42 chr11 72475302 72475420 -49368436 - MTEb LTR MaLR -258 121 6 1 1137 25 0 0 0 chr11 72475768 72475793 -49368063 + AT_rich Low_complexity Low_complexity 1 25 0 1 1137 369 0 0 0 chr11 72476967 72477008 -49366848 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1137 538 211 15 52 chr11 72477008 72477143 -49366713 - B1_Mus1 SINE Alu -18 130 1 1 1137 234 0 0 0 chr11 72477153 72477179 -49366677 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1 1137 659 275 90 0 chr11 72477241 72477419 -49366437 - B3A SINE B2 -2 196 3 1 1137 933 160 193 0 chr11 72477597 72477778 -49366078 - B3 SINE B2 0 216 1 1 1137 932 185 51 31 chr11 72477881 72478076 -49365780 - B3 SINE B2 -15 201 3 1 1137 469 299 128 53 chr11 72478413 72478639 -49365217 + B4A SINE B4 2 244 -48 1 1137 248 300 155 29 chr11 72478777 72478880 -49364976 - LTR82A LTR ERVL -2 870 755 1 1137 242 81 27 0 chr11 72479299 72479336 -49364520 + PB1D9 SINE Alu 78 115 -5 1 1137 756 187 52 7 chr11 72479493 72479505 -49364351 - B1_Mus1 SINE Alu -7 141 130 1 1137 396 40 0 0 chr11 72479505 72479555 -49364301 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1137 756 187 52 7 chr11 72479555 72479677 -49364179 - B1_Mus1 SINE Alu -19 129 1 1 1137 2294 203 38 44 chr11 72479706 72479834 -49364022 - RLTR11A LTR ERVK 0 528 415 1 1137 1082 45 0 0 chr11 72479834 72479967 -49363889 + B1_Mus2 SINE Alu 1 133 -14 1 1137 2294 203 38 44 chr11 72479967 72480363 -49363493 - RLTR11A LTR ERVK -114 414 7 1 1137 231 305 61 40 chr11 72480384 72480483 -49363373 - B3A SINE B2 -18 180 80 1 1137 879 135 35 63 chr11 72481018 72481192 -49362664 + URR1A DNA MER1_type 1 169 -57 1 1137 1178 59 136 0 chr11 72481229 72481398 -49362458 + B2_Mm2 SINE B2 2 193 -2 1 1137 2503 89 3 0 chr11 72481860 72482186 -49361670 + ORR1A2 LTR MaLR 1 327 0 1 1137 848 182 0 0 chr11 72482283 72482420 -49361436 + B1_Mus2 SINE Alu 1 137 -10 1 1137 307 343 48 10 chr11 72482543 72482646 -49361210 - PB1D10 SINE Alu -10 107 1 1 1138 866 200 45 6 chr11 72483489 72483677 -49360179 - B3A SINE B2 -24 192 3 1 1138 332 267 9 56 chr11 72483751 72483858 -49359998 - ID_B1 SINE B4 -2 222 121 1 1138 220 344 0 0 chr11 72483967 72484031 -49359825 - B1F SINE Alu -34 115 52 1 1138 637 254 14 0 chr11 72484283 72484425 -49359431 - B3 SINE B2 -40 176 33 1 1138 456 198 52 0 chr11 72484598 72484694 -49359162 - B1_Mus2 SINE Alu 0 147 47 1 1138 911 77 206 25 chr11 72484754 72484914 -49358942 - B2_Mm2 SINE B2 -6 189 1 1 1138 420 192 51 0 chr11 72485080 72485158 -49358698 - tRNA-Ser-TCA_ tRNA tRNA -3 82 1 1 1138 359 309 25 44 chr11 72485240 72485399 -49358457 - RSINE1 SINE B4 -6 159 4 1 1138 520 211 32 0 chr11 72485539 72485634 -49358222 - B3 SINE B2 -116 100 3 1 1138 595 309 34 11 chr11 72485655 72485832 -49358024 - MTD LTR MaLR -238 181 1 1 1138 337 269 48 96 chr11 72486829 72487080 -49356776 + L1MB8 LINE L1 5911 6149 -29 1 1138 402 362 32 32 chr11 72487099 72487256 -49356600 + RSINE1 SINE B4 6 162 -3 1 1138 342 0 0 0 chr11 72487256 72487294 -49356562 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1 1138 702 215 28 0 chr11 72487452 72487596 -49356260 - B1F2 SINE Alu 0 149 2 1 1138 926 130 20 0 chr11 72488409 72488555 -49355301 - B1_Mur4 SINE Alu 0 150 2 1 1138 369 62 0 0 chr11 72488613 72488661 -49355195 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1 1138 195 69 0 0 chr11 72488661 72488690 -49355166 + (CAGT)n Simple_repeat Simple_repeat 3 31 0 1 1138 355 250 68 0 chr11 72488690 72488778 -49355078 - PB1D9 SINE Alu -20 100 7 1 1138 873 237 10 31 chr11 72488781 72488977 -49354879 - B3 SINE B2 -1 215 24 1 1138 569 291 43 24 chr11 72489055 72489263 -49354593 - ID_B1 SINE B4 -12 212 1 1 1138 26 30 0 0 chr11 72490113 72490146 -49353710 + AT_rich Low_complexity Low_complexity 1 33 0 1 1138 674 225 141 16 chr11 72490146 72490172 -49353684 - B3 SINE B2 -8 208 183 1 1138 201 74 0 0 chr11 72490172 72490199 -49353657 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1 1138 674 225 141 16 chr11 72490199 72490357 -49353499 - B3 SINE B2 -34 182 3 1 1138 685 249 74 12 chr11 72490357 72490520 -49353336 - B3 SINE B2 -2 214 42 1 1138 387 0 0 0 chr11 72490522 72490565 -49353291 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1138 1335 31 0 0 chr11 72490565 72490725 -49353131 - B2_Mm2 SINE B2 -33 162 3 1 1138 237 143 0 0 chr11 72490727 72490762 -49353094 - B3 SINE B2 -176 40 6 1 1138 367 19 39 0 chr11 72491093 72491145 -49352711 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1138 21 0 0 0 chr11 72491487 72491508 -49352348 + AT_rich Low_complexity Low_complexity 1 21 0 1 1138 244 256 98 22 chr11 72491595 72491687 -49352169 - L1MA8 LINE L1 -68 6223 6125 1 1138 1621 21 21 0 chr11 72492420 72492609 -49351247 + B2_Mm1a SINE B2 1 193 0 1 1138 22 35 0 0 chr11 72492831 72492860 -49350996 + AT_rich Low_complexity Low_complexity 1 29 0 1 1138 1098 90 0 0 chr11 72493049 72493194 -49350662 - B1_Mus2 SINE Alu -1 146 2 1 1138 1554 227 44 102 chr11 72493763 72493819 -49350037 - MTD LTR MaLR -2 417 380 1 1138 451 108 108 0 chr11 72493819 72493893 -49349963 + ID2 SINE ID 2 83 0 1 1138 1554 227 44 102 chr11 72493893 72494267 -49349589 - MTD LTR MaLR -40 379 12 1 1138 221 53 53 0 chr11 72494272 72494310 -49349546 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1138 1011 223 118 41 chr11 72494351 72494592 -49349264 - MTD LTR MaLR -117 302 34 1 1138 838 137 240 6 chr11 72494592 72494775 -49349081 - URR1A DNA MER1_type 0 226 1 1 1138 1011 223 118 41 chr11 72494775 72494804 -49349052 - MTD LTR MaLR -386 33 11 1 1138 502 282 77 45 chr11 72494812 72494968 -49348888 + ID_B1 SINE B4 63 223 -1 1 1138 235 242 136 0 chr11 72495244 72495310 -49348546 - ID4_ SINE ID -7 76 2 1 1138 847 169 14 0 chr11 72495912 72496054 -49347802 + B1_Mur3 SINE Alu 1 144 -5 1 1138 707 252 114 64 chr11 72496393 72496613 -49347243 + B4A SINE B4 2 232 -60 1 1138 251 211 38 19 chr11 72496835 72496888 -49346968 + MIRb SINE MIR 205 258 -10 1 1138 35 24 0 0 chr11 72496926 72496968 -49346888 + AT_rich Low_complexity Low_complexity 1 42 0 1 1138 820 237 143 45 chr11 72501210 72501406 -49342450 + B4A SINE B4 2 228 -64 1 1138 660 193 65 22 chr11 72501406 72501544 -49342312 + B1_Mur3 SINE Alu 1 144 -5 2 1138 820 237 143 45 chr11 72501544 72501612 -49342244 + B4A SINE B4 229 292 0 1 1138 273 258 146 0 chr11 72501919 72502008 -49341848 + PB1D7 SINE Alu 19 120 0 3 1138 295 264 8 106 chr11 72502699 72502719 -49341137 + MT2B LTR ERVL 148 155 -446 4 1138 740 199 15 7 chr11 72502719 72502856 -49341000 + B1_Mur3 SINE Alu 2 139 -10 5 1138 210 282 54 109 chr11 72504094 72504241 -49339615 - MIRc SINE MIR -125 143 5 6 1138 182 276 35 0 chr11 72504615 72504673 -49339183 - MIRc SINE MIR -93 175 116 7 1138 245 267 76 144 chr11 72504785 72504903 -49338953 + PB1D10 SINE Alu 2 111 -6 8 1138 515 257 20 41 chr11 72505775 72505921 -49337935 - B1_Mur1 SINE Alu -5 144 2 9 1138 557 236 106 0 chr11 72506111 72506234 -49337622 + ID_B1 SINE B4 85 220 -4 1 1138 267 173 222 0 chr11 72506257 72506338 -49337518 + RSINE1 SINE B4 17 115 -50 1 1138 695 95 0 9 chr11 72506470 72506576 -49337280 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1138 726 191 8 8 chr11 72506576 72506703 -49337153 - B3 SINE B2 -62 154 28 1 1138 823 46 0 18 chr11 72506704 72506814 -49337042 - B1_Mm SINE Alu 0 147 40 1 1138 290 98 0 0 chr11 72506825 72506866 -49336990 - B3 SINE B2 -175 41 1 1 1138 1337 216 86 48 chr11 72506882 72507233 -49336623 + MTD LTR MaLR 56 419 0 1 1138 1213 213 93 87 chr11 72507376 72507742 -49336114 - ORR1C2 LTR MaLR 0 384 17 1 1138 33 66 0 0 chr11 72507743 72507804 -49336052 + AT_rich Low_complexity Low_complexity 1 61 0 1 1138 682 233 0 8 chr11 72507842 72507972 -49335884 - B3 SINE B2 -87 129 1 1 1138 1054 164 21 27 chr11 72508046 72508234 -49335622 - B2_Mm2 SINE B2 -8 187 1 1 1138 4225 183 25 16 chr11 72508306 72509132 -49334724 - Lx9 LINE L1 -6 7638 6805 2 1138 212 0 36 0 chr11 72509220 72509248 -49334608 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1138 779 168 0 0 chr11 72509249 72509374 -49334482 - B1_Mus2 SINE Alu -12 135 11 2 1138 890 201 152 0 chr11 72509391 72509575 -49334281 - B3 SINE B2 -4 212 1 2 1138 535 243 111 21 chr11 72509721 72509910 -49333946 - MER3 DNA MER1_type -3 206 1 2 1138 216 0 0 0 chr11 72509982 72510006 -49333850 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2 1138 243 246 138 0 chr11 72510154 72510219 -49333637 - FLAM_A SINE Alu -30 97 23 2 1138 640 282 70 77 chr11 72510886 72511152 -49332704 - ORR1E LTR MaLR -76 283 13 2 1138 1479 172 139 12 chr11 72511160 72511448 -49332408 - ORR1D1 LTR MaLR -9 365 50 2 1138 347 74 37 0 chr11 72511448 72511502 -49332354 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 2 1138 1479 172 139 12 chr11 72511502 72511537 -49332319 - ORR1D1 LTR MaLR -325 49 3 2 1138 467 195 150 0 chr11 72511896 72512009 -49331847 - B3 SINE B2 0 216 87 3 1138 295 347 0 13 chr11 72512086 72512162 -49331694 - B1F SINE Alu -74 75 1 3 1138 2113 155 118 16 chr11 72512219 72512599 -49331257 - MTC LTR MaLR -2 419 1 3 1138 270 0 0 0 chr11 72512629 72512659 -49331197 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1138 372 333 35 17 chr11 72513288 72513404 -49330452 + PB1 SINE Alu 1 118 -9 3 1138 227 316 0 0 chr11 72513429 72513486 -49330370 + ID4 SINE ID 5 61 -22 3 1138 523 312 19 31 chr11 72513702 72513864 -49329992 + RSINE1 SINE B4 4 163 -2 3 1138 277 260 27 14 chr11 72514381 72514455 -49329401 - ORR1E LTR MaLR -284 75 1 3 1138 336 194 0 16 chr11 72514640 72514703 -49329153 + B4A SINE B4 24 85 -207 3 1138 851 207 44 44 chr11 72514713 72514895 -49328961 + B3A SINE B2 1 182 -16 3 1138 418 297 0 19 chr11 72515029 72515132 -49328724 - ID_B1 SINE B4 -38 186 86 4 1138 230 267 17 0 chr11 72515140 72515200 -49328656 + (TATG)n Simple_repeat Simple_repeat 2 62 0 4 1138 235 327 45 27 chr11 72515288 72515398 -49328458 - PB1D10 SINE Alu -5 112 1 4 1138 773 260 33 17 chr11 72515476 72515656 -49328200 + B3A SINE B2 2 184 -14 4 1138 1391 58 40 0 chr11 72515658 72515831 -49328025 - B2_Mm2 SINE B2 -15 180 1 4 1138 239 289 58 0 chr11 72516038 72516090 -49327766 + RSINE1 SINE B4 90 144 -21 4 1138 198 0 0 0 chr11 72516098 72516120 -49327736 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1138 479 206 150 53 chr11 72516146 72516279 -49327577 - B1_Mus2 SINE Alu -1 146 1 4 1138 430 239 43 34 chr11 72516493 72516610 -49327246 - B3A SINE B2 -78 120 3 4 1138 615 71 0 0 chr11 72516621 72516706 -49327150 + (CTTTG)n Simple_repeat Simple_repeat 3 87 0 4 1138 700 181 70 8 chr11 72516707 72516835 -49327021 - B1_Mur2 SINE Alu -13 136 1 5 1138 195 69 0 0 chr11 72517107 72517136 -49326720 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1138 688 292 165 11 chr11 72517270 72517707 -49326149 - L1ME1 LINE L1 -13 6166 5663 5 1138 295 280 71 60 chr11 72517765 72517970 -49325886 + MIRb SINE MIR 22 230 -38 5 1138 406 167 301 8 chr11 72518453 72518586 -49325270 - RMER1A Other Other -5 1025 854 5 1138 733 40 99 0 chr11 72518586 72518687 -49325169 + B1_Mus2 SINE Alu 37 147 0 5 1138 4024 207 40 13 chr11 72518704 72519308 -49324548 - RMER1A Other Other -192 838 235 5 1138 249 33 0 0 chr11 72519308 72519338 -49324518 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1138 4024 240 95 73 chr11 72519338 72519820 -49324036 - RMER1A Other Other -553 513 45 5 1138 527 274 17 0 chr11 72520196 72520313 -49323543 + PB1D9 SINE Alu 2 120 0 5 1138 657 275 145 39 chr11 72520424 72520774 -49323082 - L1MD LINE L1 -1148 4998 4612 5 1138 998 172 10 31 chr11 72520774 72520966 -49322890 - B2_Mm2 SINE B2 -7 188 1 5 1138 657 275 145 39 chr11 72520966 72521133 -49322723 - L1MD LINE L1 -1535 4611 4426 5 1138 418 254 73 0 chr11 72521213 72521323 -49322533 - ID_B1 SINE B4 -106 118 1 6 1138 406 320 80 20 chr11 72522080 72522230 -49321626 - RSINE1 SINE B4 -6 159 1 6 1138 1187 118 37 26 chr11 72522469 72522660 -49321196 + B2_Mm2 SINE B2 1 193 -2 6 1138 750 134 9 0 chr11 72523286 72523398 -49320458 + B1_Mur2 SINE Alu 2 114 -35 6 1138 287 257 252 19 chr11 72523396 72523499 -49320357 + B1_Mur1 SINE Alu 11 137 -12 6 1138 348 262 52 84 chr11 72523398 72523438 -49320418 + MT2B LTR ERVL 166 312 -289 6 1138 209 89 67 0 chr11 72523943 72523988 -49319868 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 1138 1057 150 7 0 chr11 72524026 72524173 -49319683 + B1_Mur4 SINE Alu 3 150 0 6 1138 627 185 312 0 chr11 72524222 72524379 -49319477 + B3 SINE B2 1 206 -10 6 1138 264 77 0 0 chr11 72524857 72524896 -49318960 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1138 857 235 7 0 chr11 72524905 72525058 -49318798 - RSINE1 SINE B4 -10 155 2 7 1138 440 70 0 4 chr11 72525082 72525146 -49318710 - B2_Mm2 SINE B2 -108 108 47 7 1138 214 171 24 0 chr11 72525110 72525151 -49318705 - B4 SINE B4 -210 82 41 7 1138 1217 101 6 0 chr11 72525163 72525332 -49318524 - B2_Mm1t SINE B2 -22 171 2 7 1138 198 71 0 0 chr11 72525373 72525401 -49318455 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1138 649 267 27 27 chr11 72525403 72525553 -49318303 - RSINE1 SINE B4 -13 152 3 7 1138 327 277 0 0 chr11 72525921 72525986 -49317870 - ID4 SINE ID -17 66 2 7 1138 468 275 78 28 chr11 72526161 72526303 -49317553 + B1F SINE Alu 1 149 0 7 1138 970 241 39 26 chr11 72526318 72526552 -49317304 + B4 SINE B4 45 281 -11 7 1138 624 201 60 37 chr11 72526732 72526866 -49316990 - B1F2 SINE Alu -1 148 12 7 1138 430 224 71 10 chr11 72526874 72526973 -49316883 - ID_B1 SINE B4 -7 217 113 8 1138 281 320 48 10 chr11 72527222 72527326 -49316530 - B1F SINE Alu 0 149 42 8 1138 918 226 74 0 chr11 72528136 72528326 -49315530 - B3 SINE B2 -5 211 8 8 1138 35 41 0 0 chr11 72528440 72528489 -49315367 + AT_rich Low_complexity Low_complexity 1 49 0 8 1138 192 77 0 0 chr11 72528533 72528559 -49315297 + (TTA)n Simple_repeat Simple_repeat 2 27 0 8 1138 242 350 0 0 chr11 72528724 72528784 -49315072 - B4A SINE B4 -3 289 230 8 1138 326 333 65 0 chr11 72528805 72528898 -49314958 - PB1D9 SINE Alu -13 107 9 8 1138 183 139 0 0 chr11 72528940 72528976 -49314880 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1138 4936 108 47 4 chr11 72528978 72529743 -49314113 - RMER12 LTR ERVK -524 798 1 8 1138 497 248 40 0 chr11 72529832 72529933 -49313923 - B1_Mus2 SINE Alu -42 105 1 8 1138 453 265 115 18 chr11 72529973 72530138 -49313718 - B3A SINE B2 0 198 18 9 1138 355 330 73 17 chr11 72530162 72530341 -49313515 - B3A SINE B2 -6 192 4 9 1138 643 224 9 0 chr11 72530374 72530490 -49313366 - PB1D9 SINE Alu -3 117 1 9 1138 784 274 13 0 chr11 72530561 72530718 -49313138 + RSINE1 SINE B4 3 161 -4 9 1138 1430 28 75 54 chr11 72531302 72531318 -49312538 - B2_Mm1a SINE B2 -2 191 176 9 1138 243 0 0 0 chr11 72531318 72531345 -49312511 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 9 1138 1430 28 75 54 chr11 72531345 72531514 -49312342 - B2_Mm1a SINE B2 -18 175 4 9 1138 789 220 0 0 chr11 72531514 72531647 -49312209 - B1_Mur4 SINE Alu -11 139 7 9 1138 316 312 31 0 chr11 72532143 72532239 -49311617 - L1M5 LINE L1 -3395 2751 2653 9 1138 354 261 0 0 chr11 72532241 72532306 -49311550 - ID4 SINE ID -1 82 18 9 1138 367 273 19 154 chr11 72532326 72532482 -49311374 - B1F SINE Alu -2 147 13 9 1138 378 0 0 0 chr11 72532555 72532597 -49311259 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1138 439 267 9 54 chr11 72532683 72532794 -49311062 + PB1D10 SINE Alu 5 110 -7 1 1138 282 289 82 0 chr11 72533110 72533207 -49310649 - MER5A DNA MER1_type -11 178 74 1 1138 1497 66 49 0 chr11 72533342 72533502 -49310354 + B2_Mm1t SINE B2 1 160 -33 1 1138 225 0 0 0 chr11 72533502 72533527 -49310329 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 1138 1497 66 49 0 chr11 72533527 72533549 -49310307 + B2_Mm1t SINE B2 161 191 -2 1 1138 705 234 85 103 chr11 72533577 72533743 -49310113 - ID_B1 SINE B4 -1 223 60 1 1138 1228 55 0 7 chr11 72533743 72533891 -49309965 - B1_Mus2 SINE Alu 0 147 1 1 1138 705 234 85 103 chr11 72533891 72533948 -49309908 - ID SINE ID -165 59 4 1 1138 25 31 0 0 chr11 72534006 72534038 -49309818 + AT_rich Low_complexity Low_complexity 1 32 0 1 1138 2403 38 3 107 chr11 72534213 72534327 -49309529 + MTB LTR MaLR 83 197 -203 1 1138 1256 42 0 0 chr11 72534327 72534470 -49309386 + B1_Mus2 SINE Alu 2 144 -3 1 1138 2403 38 3 107 chr11 72534470 72534710 -49309146 + MTB LTR MaLR 198 400 0 1 1138 813 240 99 11 chr11 72534711 72534892 -49308964 + B3 SINE B2 14 210 -6 1 1138 345 171 104 50 chr11 72534942 72535083 -49308773 + B1_Mur4 SINE Alu 1 149 -1 1 1138 756 193 37 0 chr11 72535238 72535373 -49308483 + B1_Mus2 SINE Alu 2 141 -6 1 1138 192 77 0 0 chr11 72535543 72535569 -49308287 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1138 485 147 0 0 chr11 72535596 72535664 -49308192 - B3 SINE B2 -148 68 1 1 1138 1585 214 49 10 chr11 72535715 72536022 -49307834 - RLTR14 LTR ERV1 -63 319 1 1 1138 2704 133 118 88 chr11 72537747 72538315 -49305541 + RMER4B LTR ERVK 1 585 0 1 1138 833 153 14 14 chr11 72538535 72538674 -49305182 + B1_Mur4 SINE Alu 11 149 -1 1 1138 538 298 101 0 chr11 72538755 72538933 -49304923 + B3A SINE B2 2 197 -1 1 1138 756 209 21 14 chr11 72538950 72539091 -49304765 + B1_Mur1 SINE Alu 2 143 -6 1 1138 24 0 0 0 chr11 72539134 72539158 -49304698 + AT_rich Low_complexity Low_complexity 1 24 0 1 1138 813 175 0 27 chr11 72539249 72539396 -49304460 + B1_Mus1 SINE Alu 2 144 -4 1 1138 441 0 0 0 chr11 72539415 72539464 -49304392 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1138 354 260 97 52 chr11 72539916 72540050 -49303806 - B1F SINE Alu -7 142 3 1 1138 525 114 258 50 chr11 72540070 72540190 -49303666 - B1_Mus1 SINE Alu 0 148 4 1 1138 483 258 29 95 chr11 72540243 72540380 -49303476 + RSINE1 SINE B4 3 130 -35 1 1138 1781 21 0 10 chr11 72540392 72540586 -49303270 - B2_Mm1a SINE B2 0 193 2 1 1138 468 0 0 0 chr11 72540636 72540688 -49303168 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1 1138 252 0 0 0 chr11 72540770 72540798 -49303058 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1138 224 302 0 0 chr11 72540799 72540842 -49303014 - ID4_ SINE ID -9 74 32 1 1138 427 271 52 88 chr11 72540881 72541075 -49302781 - B2_Mm2 SINE B2 -6 189 3 1 1138 253 268 12 123 chr11 72541119 72541200 -49302656 - ID4_ SINE ID -11 72 1 1 1138 1043 228 25 0 chr11 72541240 72541437 -49302419 - B3 SINE B2 -12 204 3 1 1138 1130 62 172 12 chr11 72541485 72541648 -49302208 - B2_Mm2 SINE B2 -5 190 2 1 1138 358 191 0 29 chr11 72541956 72542026 -49301830 + PB1D10 SINE Alu 43 110 -7 1 1138 201 255 39 0 chr11 72542501 72542552 -49301304 + MIR3 SINE MIR 135 187 -21 1 1138 725 260 39 6 chr11 72542777 72542955 -49300901 - B4 SINE B4 -3 289 106 1 1138 352 326 22 15 chr11 72543125 72543259 -49300597 + B1F1 SINE Alu 10 144 -5 1 1138 331 238 32 0 chr11 72543265 72543328 -49300528 + ID4_ SINE ID 2 66 -17 1 1138 683 252 7 27 chr11 72543353 72543500 -49300356 - B1F SINE Alu -2 147 4 1 1138 237 289 133 10 chr11 72544249 72544347 -49299509 - MLT1E2-int LTR MaLR -1247 124 15 1 1138 1019 181 6 0 chr11 72544395 72544566 -49299290 + B3 SINE B2 38 209 -7 1 1138 791 282 48 199 chr11 72544569 72545108 -49298748 - MLT1E2 LTR MaLR -106 521 1 1 1138 702 159 175 0 chr11 72545231 72545357 -49298499 - B1_Mus1 SINE Alu 0 148 1 1 1138 338 172 110 0 chr11 72545580 72545667 -49298189 + PB1D9 SINE Alu 6 113 -7 1 1138 481 220 11 0 chr11 72546177 72546268 -49297588 + B1_Mur2 SINE Alu 58 149 0 1 1138 423 270 96 62 chr11 72546302 72546448 -49297408 + B3A SINE B2 15 165 -33 1 1138 2565 137 69 47 chr11 72546459 72546911 -49296945 - RMER4A LTR ERVK 0 466 5 1 1138 435 119 0 0 chr11 72546912 72546979 -49296877 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 1 1138 1119 83 7 20 chr11 72547061 72547208 -49296648 + B1_Mur4 SINE Alu 5 149 -1 1 1138 735 153 16 0 chr11 72547358 72547482 -49296374 + URR1B DNA MER1_type 100 225 0 1 1138 339 236 97 35 chr11 72547482 72547503 -49296353 - CYRA11_Mm Unknown Y-chromosome -320 297 144 1 1138 467 292 135 11 chr11 72547578 72547891 -49295965 + L1_Mur3 LINE L1 5146 5458 -422 1 1138 353 206 25 99 chr11 72547906 72547987 -49295869 + RSINE1 SINE B4 30 104 -61 1 1138 422 167 57 45 chr11 72548076 72548164 -49295692 - PB1D9 SINE Alu 0 120 32 1 1138 342 251 112 29 chr11 72548171 72548345 -49295511 + L1_Mur3 LINE L1 5501 5697 -183 1 1138 303 260 77 32 chr11 72549205 72549316 -49294540 - B1F2 SINE Alu -5 115 5 1 1138 441 252 20 0 chr11 72550278 72550377 -49293479 + PB1D7 SINE Alu 1 101 -19 1 1138 1121 30 0 0 chr11 72550389 72550522 -49293334 + L1_Mus2 LINE L1 6241 6373 -193 1 1138 248 135 0 0 chr11 72550519 72550571 -49293285 + L1Md_F2 LINE L1 6531 6582 0 1 1138 611 174 34 17 chr11 72550852 72550969 -49292887 - PB1D9 SINE Alu 0 120 2 1 1138 1235 68 0 0 chr11 72551012 72551158 -49292698 - B1_Mus2 SINE Alu 0 147 2 1 1138 202 139 28 0 chr11 72551245 72551281 -49292575 + (CCTA)n Simple_repeat Simple_repeat 3 39 0 1 1138 477 105 0 0 chr11 72551281 72551367 -49292489 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1138 391 178 166 0 chr11 72551378 72551484 -49292372 - B3 SINE B2 -70 125 2 1 1138 206 329 156 13 chr11 72552164 72552318 -49291538 - L3 LINE CR1 -22 4467 4292 1 1138 1046 226 34 5 chr11 72552448 72552657 -49291199 - B3 SINE B2 0 216 2 1 1138 192 40 0 0 chr11 72553004 72553029 -49290827 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1138 261 274 208 10 chr11 72553656 72553752 -49290104 - PB1D10 SINE Alu -1 116 2 1 1138 404 210 86 0 chr11 72554191 72554283 -49289573 - B1F1 SINE Alu -27 123 24 1 1138 416 227 25 91 chr11 72554633 72554754 -49289102 - PB1D10 SINE Alu 0 117 5 1 1138 714 201 101 45 chr11 72554799 72554997 -49288859 - B3 SINE B2 -7 209 1 1 1138 1416 291 111 99 chr11 72555212 72556063 -49287793 - Charlie1a DNA MER1_type -581 874 14 1 1138 192 97 0 0 chr11 72556164 72556195 -49287661 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 1 1138 247 200 0 0 chr11 72556195 72556240 -49287616 - PB1D9 SINE Alu 0 120 76 1 1138 625 268 19 0 chr11 72556336 72556493 -49287363 + RSINE1 SINE B4 5 164 -1 1 1138 261 0 0 0 chr11 72556498 72556527 -49287329 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1138 1167 70 0 0 chr11 72557039 72557182 -49286674 - B1_Mus2 SINE Alu 0 147 5 1 1138 2923 87 12 5 chr11 72557626 72558030 -49285826 - MTB_Mm LTR MaLR 0 407 1 1 1138 349 214 35 35 chr11 72558229 72558316 -49285540 - B3 SINE B2 0 216 130 1 1138 257 267 99 11 chr11 72558485 72558576 -49285280 - B1F2 SINE Alu 0 149 51 1 1138 426 209 23 23 chr11 72558532 72558620 -49285236 - B3 SINE B2 -128 88 1 1 1138 692 219 14 14 chr11 72558961 72559109 -49284747 + B1_Mur2 SINE Alu 1 148 -1 1 1138 678 219 112 0 chr11 72559340 72559500 -49284356 - B3A SINE B2 -16 182 5 1 1138 1016 196 5 93 chr11 72559803 72560017 -49283839 - B3 SINE B2 -5 211 17 1 1138 372 293 96 15 chr11 72560022 72560157 -49283699 + MER20 DNA MER1_type 58 203 -16 1 1138 1261 40 0 0 chr11 72560698 72560846 -49283010 + B1_Mus1 SINE Alu 1 148 0 1 1138 397 222 132 23 chr11 72560914 72561043 -49282813 - B1F1 SINE Alu -2 147 5 1 1138 1069 292 72 84 chr11 72561116 72561654 -49282202 + MER44B DNA MER2_type 9 540 -10 1 1138 318 293 86 11 chr11 72561657 72561809 -49282047 + MIRb SINE MIR 18 171 -37 1 1138 233 227 116 43 chr11 72561832 72561901 -49281955 + B3A SINE B2 2 75 -123 1 1138 780 204 0 0 chr11 72562212 72562354 -49281502 + B1_Mur4 SINE Alu 3 144 -6 1 1138 222 208 0 0 chr11 72562365 72562413 -49281443 + GA-rich Low_complexity Low_complexity 4 51 0 1 1138 26 30 0 0 chr11 72563200 72563233 -49280623 + AT_rich Low_complexity Low_complexity 1 33 0 1 1138 423 220 10 20 chr11 72563372 72563474 -49280382 + PB1D9 SINE Alu 1 101 -19 1 1138 226 298 0 0 chr11 72564219 72564266 -49279590 + PB1 SINE Alu 14 60 -67 1 1138 552 207 17 25 chr11 72564318 72564437 -49279419 + PB1D9 SINE Alu 1 118 -2 1 1138 225 289 37 73 chr11 72564532 72564614 -49279242 + BC1_Mm scRNA scRNA 6 84 -68 1 1138 349 259 116 20 chr11 72564867 72565013 -49278843 - RSINE1 SINE B4 -4 161 2 1 1138 205 51 25 25 chr11 72565107 72565147 -49278709 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1138 490 227 225 11 chr11 72565148 72565326 -49278530 - ID_B1 SINE B4 -7 217 2 1 1138 745 265 66 6 chr11 72565913 72566095 -49277761 + B3 SINE B2 23 215 -1 1 1138 572 254 30 8 chr11 72566116 72566247 -49277609 + B1F2 SINE Alu 1 134 -15 1 1138 1054 218 14 19 chr11 72566718 72566933 -49276923 - B3 SINE B2 -1 215 2 2 1138 336 24 0 0 chr11 72568366 72568407 -49275449 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1138 288 0 0 0 chr11 72568407 72568438 -49275418 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1138 906 209 55 5 chr11 72568516 72568718 -49275138 - B3 SINE B2 -4 212 1 2 1138 562 281 177 10 chr11 72568720 72568918 -49274938 - B4 SINE B4 -61 231 1 2 1138 202 213 0 41 chr11 72571236 72571285 -49272571 + CT-rich Low_complexity Low_complexity 1 47 0 2 1138 297 239 56 0 chr11 72571287 72571358 -49272498 - B1_Mur1 SINE Alu -35 114 40 2 1138 1336 86 43 0 chr11 72572123 72572310 -49271546 - B2_Mm2 SINE B2 0 195 1 2 1138 21 36 0 0 chr11 72572489 72572517 -49271339 + AT_rich Low_complexity Low_complexity 1 28 0 2 1138 432 259 142 9 chr11 72572562 72572675 -49271181 - B3A SINE B2 -69 129 2 2 1138 522 165 97 0 chr11 72572706 72572809 -49271047 - RSINE1 SINE B4 -45 120 8 2 1138 330 134 0 0 chr11 72572809 72572876 -49270980 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 2 1138 1069 215 83 8 chr11 72572905 72573158 -49270698 - ORR1D1 LTR MaLR -102 272 1 2 1138 735 193 0 0 chr11 72575228 72575347 -49268509 - B3 SINE B2 -13 203 85 2 1138 1585 52 5 0 chr11 72575490 72575682 -49268174 + B2_Mm1t SINE B2 1 193 0 2 1138 425 226 53 62 chr11 72575717 72575830 -49268026 + B3 SINE B2 104 215 -1 2 1138 426 274 49 61 chr11 72575850 72575933 -49267923 + RSINE1 SINE B4 4 81 -84 2 1138 2169 142 79 3 chr11 72575933 72576299 -49267557 - ORR1B1 LTR MaLR 0 394 1 2 1138 426 274 49 61 chr11 72576299 72576378 -49267478 + RSINE1 SINE B4 82 164 -1 2 1138 378 113 65 0 chr11 72576583 72576645 -49267211 + RMER13A LTR ERVK 1 66 -794 2 1138 1207 200 17 4 chr11 72576638 72576874 -49266982 + RMER13A LTR ERVK 582 820 -40 2 1138 511 259 49 7 chr11 72577013 72577157 -49266699 + RSINE1 SINE B4 3 152 -13 2 1138 596 242 101 45 chr11 72577186 72577385 -49266471 + B3 SINE B2 2 211 -5 2 1138 285 29 0 0 chr11 72577584 72577618 -49266238 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1138 203 325 0 35 chr11 72579734 72579906 -49263950 + (TGAG)n Simple_repeat Simple_repeat 2 167 0 2 1138 228 317 0 37 chr11 72580401 72580588 -49263268 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 2 1138 21 36 0 0 chr11 72582372 72582400 -49261456 + AT_rich Low_complexity Low_complexity 1 28 0 2 1138 608 171 302 30 chr11 72584824 72584993 -49258863 + B3 SINE B2 2 216 0 2 1138 1584 21 5 26 chr11 72585390 72585581 -49258275 + B2_Mm1t SINE B2 1 187 -6 2 1138 705 149 50 0 chr11 72585977 72586098 -49257758 - B1_Mur1 SINE Alu -15 134 8 2 1138 1280 98 16 0 chr11 72586192 72586375 -49257481 + B2_Mm2 SINE B2 9 194 -1 2 1138 892 155 241 0 chr11 72586381 72586555 -49257301 + B3 SINE B2 1 216 0 2 1138 8035 57 10 10 chr11 72586788 72588466 -49255390 - Lx3_Mus LINE L1 -368 6641 4969 2 1138 2256 84 148 0 chr11 72588466 72588798 -49255058 + Lx3_Mus LINE L1 6629 7009 0 2 1138 201 167 0 0 chr11 72588808 72588844 -49255012 + GA-rich Low_complexity Low_complexity 2 37 0 2 1138 534 201 232 11 chr11 72589035 72589187 -49254669 - MTD LTR MaLR -39 380 197 2 1138 787 174 21 14 chr11 72589187 72589327 -49254529 - B1_Mur3 SINE Alu -8 141 1 2 1138 391 262 169 65 chr11 72589327 72589358 -49254498 - MTD LTR MaLR -204 196 164 2 1138 3353 117 148 33 chr11 72589378 72590021 -49253835 - RMER6A LTR ERVK -39 717 1 2 1138 337 310 39 39 chr11 72590117 72590221 -49253635 + PB1D9 SINE Alu 1 104 -16 2 1138 334 221 78 78 chr11 72590259 72590362 -49253494 - MTD LTR MaLR -299 120 18 2 1138 907 238 89 71 chr11 72590423 72590704 -49253152 + B4A SINE B4 3 288 -4 2 1138 1210 68 0 0 chr11 72590892 72591038 -49252818 + B1_Mus2 SINE Alu 2 147 0 2 1138 454 276 18 20 chr11 72591072 72591229 -49252627 + ID_B1 SINE B4 1 217 -7 2 1138 859 189 14 0 chr11 72591281 72591424 -49252432 + B1_Mur2 SINE Alu 5 149 0 2 1138 279 0 0 0 chr11 72592696 72592727 -49251129 + (CAG)n Simple_repeat Simple_repeat 2 32 0 2 1138 231 170 0 0 chr11 72594041 72594075 -49249781 + T-rich Low_complexity Low_complexity 15 48 0 2 1138 1373 76 33 0 chr11 72594075 72594259 -49249597 - B2_Mm1a SINE B2 -3 190 1 2 1138 231 170 0 0 chr11 72594259 72594271 -49249585 + T-rich Low_complexity Low_complexity 3 14 0 2 1138 189 107 0 0 chr11 72594288 72594316 -49249540 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1138 254 242 76 0 chr11 72594320 72594386 -49249470 - ID4_ SINE ID -9 74 4 2 1138 682 274 55 50 chr11 72594409 72594628 -49249228 + ID_B1 SINE B4 5 224 0 2 1138 438 263 72 8 chr11 72594773 72594921 -49248935 + B3A SINE B2 17 174 -24 2 1138 549 0 0 0 chr11 72594954 72595015 -49248841 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1138 315 0 0 0 chr11 72595015 72595049 -49248807 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1138 652 242 107 0 chr11 72595049 72595198 -49248658 - B3 SINE B2 -51 165 1 2 1138 784 222 84 0 chr11 72595255 72595422 -49248434 + B3A SINE B2 2 182 -16 2 1138 894 296 53 64 chr11 72595642 72595999 -49247857 + ORR1E LTR MaLR 3 355 -4 2 1138 309 104 21 0 chr11 72596381 72596429 -49247427 + MTD LTR MaLR 363 411 -8 2 1138 1458 132 36 50 chr11 72596435 72596714 -49247142 + MTD-int LTR MaLR 5 279 -979 2 1138 1192 68 0 0 chr11 72597003 72597150 -49246706 + B1_Mus1 SINE Alu 2 148 0 2 1138 1234 102 21 5 chr11 72597200 72597387 -49246469 + B2_Mm2 SINE B2 2 191 -4 2 1138 1003 110 21 0 chr11 72597436 72597581 -49246275 + B1_Mus1 SINE Alu 1 148 0 2 1138 192 77 0 0 chr11 72597581 72597607 -49246249 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1138 894 196 141 152 chr11 72597897 72598072 -49245784 + ORR1D2 LTR MaLR 1 136 -234 2 1138 1195 55 7 0 chr11 72598072 72598217 -49245639 - B1_Mm SINE Alu 0 147 2 2 1138 894 196 141 152 chr11 72598217 72598402 -49245454 + ORR1D2 LTR MaLR 137 357 -13 2 1138 243 300 17 0 chr11 72598666 72598726 -49245130 - ID SINE ID -158 66 6 2 1138 228 371 0 14 chr11 72598761 72598832 -49245024 - PB1D10 SINE Alu -31 86 17 2 1138 727 217 36 30 chr11 72598844 72599010 -49244846 - B3 SINE B2 0 216 50 2 1138 331 146 0 35 chr11 72599008 72599065 -49244791 - ORR1D2 LTR MaLR -315 55 1 2 1138 288 286 80 71 chr11 72599082 72599195 -49244661 - B3 SINE B2 -102 114 1 2 1138 420 265 13 134 chr11 72599234 72599365 -49244491 + ID_B1 SINE B4 87 200 -24 2 1138 1435 79 0 10 chr11 72599365 72599557 -49244299 - B2_Mm2 SINE B2 -4 191 2 2 1138 420 265 13 134 chr11 72599557 72599582 -49244274 + ID_B1 SINE B4 201 224 0 2 1138 294 309 123 40 chr11 72599615 72599962 -49243894 + L2b LINE L2 2811 3180 -195 2 1138 183 80 0 0 chr11 72600751 72600776 -49243080 + (TAAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1138 443 202 47 43 chr11 72600781 72600926 -49242930 + B1_Mur2 SINE Alu 4 147 -2 2 1138 393 302 35 41 chr11 72600924 72601069 -49242787 + ID_B1 SINE B4 81 224 0 2 1138 1194 68 0 0 chr11 72601738 72601886 -49241970 + B1_Mus1 SINE Alu 1 148 0 2 1138 229 262 47 59 chr11 72602009 72602094 -49241762 + MT2B LTR ERVL 177 260 -341 2 1138 487 209 0 0 chr11 72602024 72602110 -49241746 + ID_B1 SINE B4 116 201 -23 2 1138 351 113 0 0 chr11 72602115 72602168 -49241688 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 2 1138 2485 198 52 57 chr11 72602893 72603489 -49240367 - RMER1C Other Other -1 1341 749 2 1138 340 167 100 0 chr11 72603791 72603851 -49240005 - B1_Mur3 SINE Alu -82 67 2 2 1138 269 268 0 27 chr11 72603851 72603863 -49239993 - MT2B LTR ERVL -376 224 155 2 1138 260 309 189 6 chr11 72603995 72604164 -49239692 + L2 LINE L2 2283 2482 -937 2 1138 644 322 28 43 chr11 72604429 72604640 -49239216 - B3A SINE B2 -5 211 4 2 1138 683 201 44 15 chr11 72604657 72604793 -49239063 - B1_Mur1 SINE Alu -1 148 9 2 1138 784 211 0 13 chr11 72604831 72604980 -49238876 - B1_Mus2 SINE Alu 0 147 1 2 1138 199 248 67 29 chr11 72604980 72605084 -49238772 + L2 LINE L2 2791 2898 -521 2 1138 503 346 0 0 chr11 72605214 72605347 -49238509 + B4A SINE B4 10 142 -150 2 1138 429 271 28 0 chr11 72605396 72605503 -49238353 + PB1D7 SINE Alu 3 112 -8 2 1138 262 364 0 0 chr11 72605524 72605601 -49238255 + ID4_ SINE ID 7 83 0 2 1138 367 234 14 39 chr11 72605601 72605718 -49238138 + L1MB7 LINE L1 5481 5595 -589 2 1138 338 310 100 130 chr11 72605804 72605940 -49237916 + B4 SINE B4 2 123 -169 2 1138 252 86 0 0 chr11 72605940 72605975 -49237881 + (CAGAGA)n Simple_repeat Simple_repeat 1 35 0 2 1138 338 289 65 93 chr11 72605975 72606149 -49237707 + B4 SINE B4 88 292 0 2 1138 508 158 10 78 chr11 72606269 72606372 -49237484 + B1_Mur1 SINE Alu 41 136 -13 2 1138 3218 129 108 27 chr11 72606449 72607079 -49236777 + RMER6A LTR ERVK 1 756 0 2 1138 1372 70 38 0 chr11 72607103 72607289 -49236567 + B2_Mm1t SINE B2 1 193 0 2 1138 538 259 84 26 chr11 72607293 72607483 -49236373 + L1MB7 LINE L1 5894 6094 -90 2 1138 183 293 51 17 chr11 72607794 72607853 -49236003 + MIR SINE MIR 42 102 -106 2 1138 814 216 82 0 chr11 72608065 72608259 -49235597 + B3 SINE B2 4 213 -3 2 1138 243 0 0 0 chr11 72609477 72609504 -49234352 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1138 207 0 0 0 chr11 72610157 72610180 -49233676 + (GCTG)n Simple_repeat Simple_repeat 3 25 0 2 1138 203 79 26 0 chr11 72610668 72610706 -49233150 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1138 363 256 56 71 chr11 72611239 72611365 -49232491 + ID_B1 SINE B4 92 215 -9 2 1138 368 235 184 0 chr11 72612109 72612207 -49231649 + B3A SINE B2 27 142 -56 2 1138 360 77 0 0 chr11 72612219 72612271 -49231585 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1138 200 34 0 33 chr11 72612342 72612372 -49231484 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 3 1138 794 212 41 0 chr11 72612373 72612543 -49231313 - B3 SINE B2 -38 178 2 3 1138 518 274 44 7 chr11 72612586 72612722 -49231134 - B1F1 SINE Alu -8 141 1 3 1138 344 302 54 31 chr11 72612938 72613068 -49230788 - MLT1J LTR MaLR -338 174 42 3 1138 740 204 14 0 chr11 72613189 72613336 -49230520 - B1_Mur3 SINE Alu 0 149 1 3 1138 458 273 18 26 chr11 72613743 72613856 -49230000 + PB1D7 SINE Alu 1 112 -8 3 142 614 260 4 0 chr11 72613847 72614046 -49229810 - 7SK RNA RNA -90 241 12 3 1139 22 0 0 0 chr11 72614686 72614708 -49229148 + AT_rich Low_complexity Low_complexity 1 22 0 3 1139 204 231 0 0 chr11 72615068 72615107 -49228749 + GA-rich Low_complexity Low_complexity 2 40 0 3 1139 211 136 23 0 chr11 72615240 72615284 -49228572 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 3 1139 928 65 0 92 chr11 72615285 72615437 -49228419 - B1_Mm SINE Alu 0 147 10 3 1139 1238 34 0 0 chr11 72615498 72615644 -49228212 - B1_Mm SINE Alu -1 146 1 3 1139 791 94 24 0 chr11 72616343 72616470 -49227386 + URR1B DNA MER1_type 83 212 -13 3 1139 192 345 69 0 chr11 72616654 72616770 -49227086 - L2b LINE L2 -236 3139 3016 3 1139 509 258 45 8 chr11 72616993 72617126 -49226730 - B1_Mur1 SINE Alu -8 141 4 3 1139 232 330 23 0 chr11 72617138 72617226 -49226630 + MIR SINE MIR 85 174 -88 3 1139 235 238 131 0 chr11 72617358 72617442 -49226414 - MIRc SINE MIR -127 141 47 3 1139 292 200 185 0 chr11 72617663 72617728 -49226128 - ID4_ SINE ID -4 79 3 3 1139 602 217 9 0 chr11 72617836 72617951 -49225905 - PB1D10 SINE Alu -1 116 1 3 1139 335 260 0 14 chr11 72618098 72618172 -49225684 + B4 SINE B4 1 73 -219 3 1139 949 234 19 5 chr11 72618190 72618396 -49225460 + B3 SINE B2 2 210 -6 3 1139 607 180 36 9 chr11 72618430 72618542 -49225314 + B1_Mur2 SINE Alu 24 138 -11 3 1139 183 80 0 0 chr11 72618542 72618567 -49225289 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1139 1175 55 7 0 chr11 72619373 72619519 -49224337 + B1_Mm SINE Alu 1 147 0 3 1139 329 332 128 38 chr11 72620507 72620742 -49223114 + MIR SINE MIR 6 261 -1 3 1139 202 267 203 22 chr11 72621489 72621627 -49222229 + MIR SINE MIR 82 244 -18 3 1139 333 0 0 0 chr11 72621839 72621876 -49221980 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1139 596 293 20 0 chr11 72622230 72622380 -49221476 - RSINE1 SINE B4 -5 160 8 3 1139 549 218 97 0 chr11 72622926 72623050 -49220806 + B1_Mur1 SINE Alu 1 136 -13 3 1139 1166 50 0 0 chr11 72623073 72623213 -49220643 - B1_Mus1 SINE Alu -8 140 1 3 1139 400 292 72 7 chr11 72623262 72623400 -49220456 + RSINE1 SINE B4 5 151 -14 3 1139 478 194 250 0 chr11 72623498 72623606 -49220250 + B1_Mur1 SINE Alu 1 135 -14 3 1139 541 28 0 0 chr11 72623835 72623906 -49219950 + B1_Mm SINE Alu 77 147 0 3 1139 756 257 45 0 chr11 72623916 72624118 -49219738 - B3 SINE B2 -5 211 1 3 1139 302 286 91 48 chr11 72624174 72624361 -49219495 - HAL1 LINE L1 -274 2233 2039 3 1139 574 235 66 29 chr11 72624641 72624777 -49219079 - B1F2 SINE Alu -7 142 2 3 1139 603 241 131 11 chr11 72624801 72624977 -49218879 - B3A SINE B2 0 198 2 3 1139 246 62 0 0 chr11 72625100 72625132 -49218724 + (TCC)n Simple_repeat Simple_repeat 3 34 0 3 1139 1230 34 0 7 chr11 72625139 72625288 -49218568 - B1_Mus1 SINE Alu 0 148 1 3 1139 180 111 0 0 chr11 72625418 72625445 -49218411 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1139 289 247 55 0 chr11 72625679 72625752 -49218104 - PB1D9 SINE Alu -6 114 38 3 1139 216 280 18 36 chr11 72625973 72626084 -49217772 + CT-rich Low_complexity Low_complexity 4 112 0 3 1139 201 245 0 20 chr11 72626055 72626087 -49217769 + polypyrimidine Low_complexity Low_complexity 21 52 0 3 1139 1223 113 32 11 chr11 72626087 72626274 -49217582 - B2_Mm2 SINE B2 -1 194 4 3 1139 201 245 0 20 chr11 72626274 72626291 -49217565 + polypyrimidine Low_complexity Low_complexity 4 20 0 3 1139 544 240 0 44 chr11 72626303 72626438 -49217418 - B1F1 SINE Alu -1 148 20 3 1139 333 266 59 50 chr11 72626447 72626566 -49217290 - B1F SINE Alu -7 142 23 3 1139 315 227 20 40 chr11 72626614 72626715 -49217141 + L1MB7 LINE L1 6073 6171 -13 3 1139 305 274 128 28 chr11 72626872 72626981 -49216875 + B1F2 SINE Alu 30 149 0 3 1139 413 313 100 0 chr11 72627165 72627315 -49216541 - HAL1 LINE L1 -1741 766 602 3 1139 1178 51 0 0 chr11 72627467 72627605 -49216251 + B1_Mus2 SINE Alu 1 138 -9 3 1139 207 0 0 0 chr11 72627605 72627628 -49216228 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1139 411 296 108 0 chr11 72627630 72627816 -49216040 - L1MC5 LINE L1 -47 7914 7709 3 1139 1085 191 58 19 chr11 72627816 72628024 -49215832 - B3 SINE B2 0 216 1 3 1139 934 91 14 0 chr11 72628167 72628310 -49215546 + (TTTTC)n Simple_repeat Simple_repeat 4 148 0 3 1139 1388 52 40 0 chr11 72628310 72628483 -49215373 - B2_Mm2 SINE B2 -15 180 1 3 1139 777 82 34 0 chr11 72628512 72628658 -49215198 - RMER17B LTR ERVK -499 459 309 3 1139 636 151 119 0 chr11 72628653 72628779 -49215077 - MTC-int LTR MaLR -859 399 259 3 1139 317 130 0 0 chr11 72628777 72628831 -49215025 - B1_Mur4 SINE Alu -94 56 3 3 1139 334 185 41 107 chr11 72628831 72628936 -49214920 - MTC-int LTR MaLR -1002 256 160 3 1139 804 170 41 32 chr11 72628935 72629154 -49214702 + MTC-int LTR MaLR 1035 1255 -3 3 1139 2498 117 88 25 chr11 72629157 72629553 -49214303 + MTC LTR MaLR 1 421 0 3 1139 218 323 15 0 chr11 72629564 72629629 -49214227 + ID4 SINE ID 5 70 -13 3 1139 1043 291 68 7 chr11 72630508 72630816 -49213040 - ORR1E LTR MaLR -10 349 23 3 1139 180 0 0 0 chr11 72630820 72630840 -49213016 + (TTTC)n Simple_repeat Simple_repeat 3 22 0 3 1139 1175 100 24 87 chr11 72630840 72631007 -49212849 - B2_Mm2 SINE B2 0 195 41 3 1139 1208 61 0 0 chr11 72631007 72631154 -49212702 - B1_Mus2 SINE Alu 0 147 1 3 1139 1175 100 24 87 chr11 72631154 72631194 -49212662 - B2_Mm2 SINE B2 -155 40 1 3 1139 236 300 0 0 chr11 72631648 72631708 -49212148 - U4 snRNA snRNA -85 60 1 3 1139 180 152 0 0 chr11 72631962 72631995 -49211861 + T-rich Low_complexity Low_complexity 1 33 0 3 1139 234 191 0 0 chr11 72632233 72632280 -49211576 + T-rich Low_complexity Low_complexity 1 47 0 3 1139 1244 48 0 0 chr11 72632282 72632429 -49211427 - B1_Mm SINE Alu 0 147 1 3 1139 303 243 14 0 chr11 72633050 72633120 -49210736 - ID4 SINE ID -10 73 3 3 1139 1160 174 83 4 chr11 72633828 72634152 -49209704 - Lx2B LINE L1 -11 7047 6604 3 1139 579 165 9 44 chr11 72634921 72635035 -49208821 + B3 SINE B2 107 216 0 3 1139 254 307 26 13 chr11 72635757 72635833 -49208023 + RSINE1 SINE B4 82 158 -7 3 1139 236 28 0 53 chr11 72635840 72635878 -49207978 + (ATG)n Simple_repeat Simple_repeat 3 38 0 3 1139 317 125 18 0 chr11 72635876 72635932 -49207924 + (GAA)n Simple_repeat Simple_repeat 1 57 0 3 1139 501 340 0 12 chr11 72636253 72636414 -49207442 + RSINE1 SINE B4 3 161 -4 3 1139 941 168 0 0 chr11 72636616 72636753 -49207103 - B1_Mus1 SINE Alu -8 140 4 3 1139 659 216 36 0 chr11 72638226 72638365 -49205491 - B1_Mur2 SINE Alu 0 149 6 3 1139 567 247 20 27 chr11 72638372 72638522 -49205334 - B1_Mur1 SINE Alu 0 149 1 3 1139 824 162 0 39 chr11 72638642 72638796 -49205060 - B1_Mus1 SINE Alu 0 148 1 3 1139 747 191 73 0 chr11 72640025 72640161 -49203695 + B1_Mus2 SINE Alu 2 147 0 3 1139 371 283 222 4 chr11 72640247 72640481 -49203375 - L1MC4 LINE L1 -192 7850 7566 3 1139 432 177 41 10 chr11 72640568 72640665 -49203191 - PB1D10 SINE Alu -17 100 1 3 1139 355 240 37 93 chr11 72640871 72640946 -49202910 - L1MC4 LINE L1 -969 7073 7003 3 1139 759 250 68 29 chr11 72640946 72641152 -49202704 - B3 SINE B2 0 216 3 3 1139 355 240 37 93 chr11 72641152 72641237 -49202619 - L1MC4 LINE L1 -1040 7002 6922 3 1139 406 290 8 24 chr11 72641318 72641445 -49202411 - PB1 SINE Alu -2 125 1 3 1139 755 238 176 19 chr11 72641543 72641866 -49201990 - MTEa LTR MaLR -5 374 1 3 1139 349 324 106 6 chr11 72641872 72642109 -49201747 - L1MC4 LINE L1 -1102 6780 6527 3 1139 542 221 121 8 chr11 72642391 72642523 -49201333 - B1_Mur2 SINE Alu -1 148 2 3 1139 417 237 8 85 chr11 72642882 72643011 -49200845 + PB1D7 SINE Alu 2 120 0 3 1139 659 208 6 63 chr11 72643061 72643220 -49200636 + B3A SINE B2 30 179 -19 3 1139 227 106 0 41 chr11 72643231 72643280 -49200576 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 3 1139 28 29 0 0 chr11 72643327 72643362 -49200494 + AT_rich Low_complexity Low_complexity 1 35 0 3 1139 252 281 229 0 chr11 72643397 72643493 -49200363 - PB1D7 SINE Alu -2 118 1 3 1139 681 197 80 0 chr11 72646109 72646246 -49197610 - B1_Mur1 SINE Alu -1 148 1 3 1139 245 150 0 48 chr11 72646252 72646277 -49197579 + T-rich Low_complexity Low_complexity 36 60 0 3 1139 1218 54 0 0 chr11 72646277 72646424 -49197432 - B1_Mus1 SINE Alu 0 148 2 3 1139 245 150 0 48 chr11 72646424 72646461 -49197395 + T-rich Low_complexity Low_complexity 1 35 0 3 1139 2280 87 0 18 chr11 72646489 72646818 -49197038 - L1Md_F2 LINE L1 -3 6579 6257 3 1139 244 333 10 59 chr11 72650420 72650522 -49193334 - B3A SINE B2 0 198 102 3 1139 333 0 0 0 chr11 72650609 72650646 -49193210 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1139 665 269 30 30 chr11 72650902 72651101 -49192755 - B3 SINE B2 -14 202 4 3 1139 551 225 0 18 chr11 72651118 72651231 -49192625 - PB1D7 SINE Alu 0 120 10 3 1139 595 191 44 44 chr11 72651377 72651514 -49192342 + B1_Mur2 SINE Alu 11 147 -2 4 1139 7699 58 21 7 chr11 72651629 72651649 -49192207 - L1_Mus1 LINE L1 0 6567 6553 4 1139 1713 34 0 5 chr11 72651649 72651859 -49191997 - L1Md_A LINE L1 0 6582 6374 4 1139 7699 63 20 7 chr11 72651859 72652902 -49190954 - L1_Mus1 LINE L1 -15 6552 5485 4 1139 413 212 71 0 chr11 72653718 72653803 -49190053 - PB1D10 SINE Alu -8 109 19 4 1139 220 143 24 0 chr11 72654067 72654109 -49189747 + (TTG)n Simple_repeat Simple_repeat 2 44 0 4 1139 294 272 67 10 chr11 72654531 72654635 -49189221 + B1F1 SINE Alu 5 114 -6 4 1139 225 259 0 0 chr11 72654708 72654762 -49189094 - RSINE1 SINE B4 0 165 112 4 1139 237 178 0 0 chr11 72654848 72654893 -49188963 + T-rich Low_complexity Low_complexity 1 45 0 4 1139 1189 68 0 0 chr11 72654893 72655039 -49188817 - B1_Mus2 SINE Alu 0 147 2 4 1139 417 256 166 55 chr11 72655042 72655187 -49188669 + B3A SINE B2 37 197 -1 4 1139 450 211 0 80 chr11 72655226 72655339 -49188517 + B1_Mur1 SINE Alu 17 120 -29 4 1139 915 150 0 0 chr11 72655340 72655480 -49188376 + B1_Mus1 SINE Alu 6 145 -3 4 1139 186 43 0 0 chr11 72656169 72656192 -49187664 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 4 1139 241 218 64 0 chr11 72656196 72656274 -49187582 - LTR37A LTR ERV1 -259 167 85 4 1139 414 0 0 0 chr11 72656514 72656560 -49187296 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1139 221 302 78 16 chr11 72656606 72656670 -49187186 + MER91A DNA Tip100 119 186 -10 4 1139 225 191 0 0 chr11 72657092 72657139 -49186717 + A-rich Low_complexity Low_complexity 1 47 0 4 1139 537 220 92 35 chr11 72657198 72657372 -49186484 + B2_Mm2 SINE B2 1 184 -11 4 1139 796 187 15 0 chr11 72657380 72657514 -49186342 + B1_Mur2 SINE Alu 1 136 -13 4 1139 692 243 0 20 chr11 72658040 72658191 -49185665 + B1_Mur1 SINE Alu 2 149 0 4 1139 1226 41 0 13 chr11 72658278 72658427 -49185429 - B1_Mus1 SINE Alu 0 148 2 4 1139 2620 133 42 16 chr11 72658444 72658893 -49184963 + RMER4A LTR ERVK 6 466 0 4 1139 737 280 33 0 chr11 72658894 72659076 -49184780 - B3 SINE B2 -28 188 1 4 1139 225 264 97 0 chr11 72659084 72659156 -49184700 - L2a LINE L2 -5 3421 3343 4 1139 270 0 0 0 chr11 72659704 72659734 -49184122 + (CAG)n Simple_repeat Simple_repeat 2 31 0 4 1139 431 241 92 9 chr11 72660045 72660154 -49183702 + PB1D7 SINE Alu 3 120 0 4 1139 255 254 32 0 chr11 72660525 72660588 -49183268 + CT-rich Low_complexity Low_complexity 5 69 0 4 1139 234 255 0 0 chr11 72660641 72660692 -49183164 - PB1D10 SINE Alu -65 52 2 4 1139 183 272 107 29 chr11 72660754 72660894 -49182962 - L3 LINE CR1 -645 3844 3694 4 1139 237 122 0 140 chr11 72661132 72661189 -49182667 + B1F1 SINE Alu 50 98 -51 4 1139 256 250 15 15 chr11 72661183 72661248 -49182608 - ID4 SINE ID -12 71 7 4 1139 489 193 202 0 chr11 72661547 72661661 -49182195 + B1_Mur2 SINE Alu 1 137 -12 4 1139 285 155 0 0 chr11 72661662 72661720 -49182136 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 4 1139 644 274 33 0 chr11 72662730 72662883 -49180973 + RSINE1 SINE B4 6 163 -2 4 1139 921 72 25 63 chr11 72663020 72663698 -49180158 + (CAGAG)n Simple_repeat Simple_repeat 1 652 0 4 1139 322 241 7 7 chr11 72665054 72665200 -49178656 + (CA)n Simple_repeat Simple_repeat 1 146 0 4 1139 237 289 12 62 chr11 72665790 72665871 -49177985 + ID4_ SINE ID 3 79 -4 4 1139 282 213 13 26 chr11 72665847 72665924 -49177932 + ID4 SINE ID 9 84 -68 4 1139 324 269 130 0 chr11 72666987 72667095 -49176761 - ID_B1 SINE B4 -1 223 102 4 1139 6143 184 54 10 chr11 72667147 72668320 -49175536 - Lx5 LINE L1 -4 7046 5823 4 1139 383 261 0 0 chr11 72668320 72668408 -49175448 - ID_B1 SINE B4 -129 95 8 4 1139 232 200 92 0 chr11 72669424 72669489 -49174367 - L1MC5 LINE L1 -183 7778 7708 4 1139 195 69 0 0 chr11 72669837 72669866 -49173990 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1139 6541 156 10 36 chr11 72670053 72671038 -49172818 - MTC-int LTR MaLR -32 1226 260 4 1139 1325 103 11 0 chr11 72671038 72671223 -49172633 - B2_Mm1t SINE B2 -6 187 1 4 1139 6541 156 10 36 chr11 72671223 72671492 -49172364 - MTC-int LTR MaLR -999 259 5 4 1139 1203 119 11 0 chr11 72671498 72671683 -49172173 - MTC LTR MaLR -8 413 227 4 1139 423 0 0 0 chr11 72671950 72671997 -49171859 + (TTA)n Simple_repeat Simple_repeat 3 49 0 4 1139 667 211 7 47 chr11 72672277 72672426 -49171430 + B1F1 SINE Alu 7 149 0 4 1139 225 0 0 0 chr11 72672426 72672451 -49171405 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 4 1139 1052 218 42 81 chr11 72672465 72672750 -49171106 + B4 SINE B4 5 278 -14 4 1139 505 115 21 0 chr11 72672753 72672849 -49171007 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 1139 279 0 0 0 chr11 72673486 72673517 -49170339 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1139 1149 58 0 0 chr11 72673517 72673654 -49170202 - B1_Mus1 SINE Alu -11 137 1 4 1139 252 0 0 0 chr11 72674057 72674085 -49169771 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1139 561 286 92 15 chr11 72674104 72674310 -49169546 - ID_B1 SINE B4 0 224 3 4 1139 199 338 14 0 chr11 72675149 72675220 -49168636 - L2a LINE L2 -5 3421 3350 4 1139 461 310 14 65 chr11 72675828 72675939 -49167917 - B3 SINE B2 -4 212 102 4 1139 884 153 7 27 chr11 72675939 72676087 -49167769 + B1_Mus1 SINE Alu 4 148 0 4 1139 461 310 14 65 chr11 72676087 72676189 -49167667 - B3 SINE B2 -115 101 11 4 1139 799 146 15 0 chr11 72676225 72676362 -49167494 + B1_Mus1 SINE Alu 10 148 0 4 1139 318 261 0 0 chr11 72676398 72676471 -49167385 - PB1D9 SINE Alu -33 87 16 4 1139 396 0 0 0 chr11 72676547 72676591 -49167265 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1139 268 289 39 0 chr11 72676759 72676863 -49166993 - L1ME3B LINE L1 -323 5917 5810 4 1139 392 259 36 0 chr11 72677681 72677793 -49166063 - PB1D10 SINE Alu 0 117 2 4 1139 756 175 25 0 chr11 72677974 72678134 -49165722 - URR1B DNA MER1_type -2 223 60 4 1139 739 171 85 0 chr11 72680764 72680893 -49162963 + B1_Mur2 SINE Alu 4 143 -6 4 1139 220 229 0 20 chr11 72681946 72681995 -49161861 + CT-rich Low_complexity Low_complexity 2 49 0 4 1139 283 354 42 19 chr11 72682625 72682841 -49161015 + L2c LINE L2 2821 3041 -378 4 1139 186 220 164 60 chr11 72683039 72683155 -49160701 + L2c LINE L2 3257 3384 -3 4 1139 1098 77 0 27 chr11 72683588 72683734 -49160122 + B1_Mm SINE Alu 1 142 -5 4 1139 369 0 0 0 chr11 72683744 72683785 -49160071 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1139 312 250 26 0 chr11 72684621 72684697 -49159159 - ID4_ SINE ID -3 80 3 4 1139 216 97 0 0 chr11 72684749 72684780 -49159076 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1139 601 155 19 0 chr11 72684780 72684883 -49158973 - B1_Mur1 SINE Alu 0 149 45 4 1139 369 338 99 6 chr11 72685491 72685652 -49158204 - B4A SINE B4 -114 178 3 4 1139 931 141 7 26 chr11 72685674 72685827 -49158029 - B1_Mur4 SINE Alu 0 150 1 4 1139 208 246 16 0 chr11 72685859 72685920 -49157936 + T-rich Low_complexity Low_complexity 5 66 0 4 1139 359 157 179 12 chr11 72686492 72686576 -49157280 - ID_B1 SINE B4 -9 215 118 4 1139 342 0 0 0 chr11 72686807 72686845 -49157011 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1139 624 291 46 0 chr11 72687804 72687979 -49155877 - B3A SINE B2 -13 185 3 4 1139 37 52 0 0 chr11 72688973 72689031 -49154825 + AT_rich Low_complexity Low_complexity 1 58 0 4 1139 512 242 0 8 chr11 72689311 72689432 -49154424 + PB1D9 SINE Alu 1 120 0 4 1139 180 0 0 0 chr11 72689433 72689453 -49154403 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1139 222 191 0 0 chr11 72689564 72689611 -49154245 + CT-rich Low_complexity Low_complexity 3 49 0 4 1139 431 319 8 0 chr11 72689627 72689746 -49154110 - PB1D7 SINE Alu 0 120 1 4 1139 244 316 80 7 chr11 72690517 72690654 -49153202 - L2a LINE L2 -11 3415 3269 4 1139 451 224 81 206 chr11 72691289 72691506 -49152350 - B3 SINE B2 0 216 28 4 1139 973 136 0 39 chr11 72691506 72691659 -49152197 - B1_Mur3 SINE Alu 0 149 3 4 1139 451 224 81 206 chr11 72691659 72691688 -49152168 - B3 SINE B2 -189 27 1 4 1139 261 310 190 14 chr11 72691752 72691968 -49151888 - L2a LINE L2 -1054 2365 2112 4 1139 514 279 28 14 chr11 72692572 72692714 -49151142 + B1F SINE Alu 1 144 -5 4 1139 798 205 26 7 chr11 72692775 72692927 -49150929 + B3 SINE B2 59 213 -3 4 1139 671 223 22 0 chr11 72692932 72693071 -49150785 - B1_Mur2 SINE Alu -6 143 2 4 1139 360 0 0 0 chr11 72693688 72693728 -49150128 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1139 276 343 174 0 chr11 72694922 72695100 -49148756 + MIR SINE MIR 26 234 -28 4 1139 965 202 0 0 chr11 72695293 72695456 -49148400 + U1 snRNA snRNA 1 163 -2 4 1139 709 233 34 82 chr11 72695987 72696193 -49147663 - B3A SINE B2 -1 197 2 4 1139 353 307 27 54 chr11 72696414 72696562 -49147294 - MER2 DNA MER2_type -112 233 90 4 1139 630 237 75 8 chr11 72696578 72696763 -49147093 - B3A SINE B2 -8 208 14 4 1139 407 259 242 22 chr11 72696975 72697153 -49146703 - ID_B1 SINE B4 -5 219 3 4 1139 539 96 0 12 chr11 72697159 72697243 -49146613 + (TTA)n Simple_repeat Simple_repeat 2 84 0 4 1139 505 250 0 0 chr11 72697247 72697351 -49146505 - B1_Mur1 SINE Alu -10 139 36 4 1139 922 143 20 0 chr11 72697426 72697573 -49146283 - B1_Mur4 SINE Alu 0 150 1 4 1139 320 308 0 0 chr11 72698898 72698976 -49144880 - PB1D10 SINE Alu -33 84 7 4 1139 554 223 184 46 chr11 72699448 72699622 -49144234 + B3A SINE B2 1 198 0 4 1139 333 314 96 8 chr11 72701980 72702105 -49141751 - RSINE1 SINE B4 -5 160 25 4 1139 4058 90 54 68 chr11 72703421 72704183 -49139673 + RMER17A LTR ERVK 1 751 0 5 1139 330 214 35 12 chr11 72704212 72704297 -49139559 + B1_Mur1 SINE Alu 63 149 0 5 1139 301 220 93 66 chr11 72705350 72705501 -49138355 - L1MC4 LINE L1 -947 7095 6941 5 1139 314 125 0 0 chr11 72705508 72705556 -49138300 - HAL1-3A_ME LINE L1 -835 2023 1976 5 1139 223 225 0 0 chr11 72705571 72705611 -49138245 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 5 1139 294 312 25 0 chr11 72705739 72705819 -49138037 - B4A SINE B4 -25 267 186 5 1139 1088 254 21 11 chr11 72706181 72706464 -49137392 - B4A SINE B4 -4 288 3 5 1139 1434 87 0 25 chr11 72707972 72708172 -49135684 - B2_Mm2 SINE B2 0 195 1 5 1139 1010 215 49 0 chr11 72708202 72708407 -49135449 - B3 SINE B2 -1 215 1 5 1139 322 318 53 35 chr11 72708407 72708521 -49135335 - PB1D10 SINE Alu -1 116 1 5 1139 251 270 157 0 chr11 72709222 72709311 -49134545 + PB1D7 SINE Alu 5 107 -13 5 1139 8267 47 3 5 chr11 72709311 72710567 -49133289 - L1Md_F2 LINE L1 -1 6581 5329 5 1139 261 105 0 0 chr11 72710586 72710624 -49133232 - B3A SINE B2 -144 54 17 5 1139 234 0 0 0 chr11 72710745 72710771 -49133085 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1139 1166 72 6 18 chr11 72710909 72711070 -49132786 + B2_Mm2 SINE B2 1 162 -33 5 1139 243 88 0 0 chr11 72711070 72711104 -49132752 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1139 293 309 36 7 chr11 72711349 72711489 -49132367 - L1MC4 LINE L1 -1437 6605 6462 5 1139 530 306 96 45 chr11 72711979 72712267 -49131589 + B4 SINE B4 2 272 -20 5 1139 584 275 85 32 chr11 72712515 72712703 -49131153 + B3A SINE B2 1 198 0 5 1139 1247 54 0 0 chr11 72712717 72712865 -49130991 + B1_Mus1 SINE Alu 1 148 0 5 1139 997 149 152 10 chr11 72713683 72713880 -49129976 - URR1B DNA MER1_type 0 225 1 5 1139 200 122 24 0 chr11 72714347 72714388 -49129468 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1139 203 164 15 62 chr11 72714414 72714479 -49129377 + T-rich Low_complexity Low_complexity 4 65 0 5 1139 355 290 89 10 chr11 72715118 72715219 -49128637 - RSINE1 SINE B4 -54 111 3 5 1139 457 244 110 0 chr11 72715249 72715376 -49128480 + B1F1 SINE Alu 2 142 -7 5 1139 593 284 116 52 chr11 72715398 72716042 -49127814 - L1MEc LINE L1 -3972 2428 1742 5 1139 230 326 23 0 chr11 72716079 72716165 -49127691 - ID_B1 SINE B4 -59 165 78 5 1139 628 262 36 2 chr11 72716193 72716398 -49127458 + B3A SINE B2 3 216 0 5 1139 1140 84 0 0 chr11 72716468 72716825 -49127031 + (TG)n Simple_repeat Simple_repeat 1 357 0 5 1139 12721 142 66 56 chr11 72716825 72717299 -49126557 - MERVL_2A-int LTR ERVL -3383 2378 1896 5 1139 1152 68 7 0 chr11 72717299 72717446 -49126410 + B1_Mus1 SINE Alu 1 148 0 5 1139 12721 142 66 56 chr11 72717446 72717712 -49126144 - MERVL_2A-int LTR ERVL -3866 1895 1722 5 1139 1438 108 0 59 chr11 72717712 72717949 -49125907 - Lx2 LINE L1 0 6997 6775 5 1139 12721 142 66 56 chr11 72717949 72719561 -49124295 - MERVL_2A-int LTR ERVL -4040 1721 1 5 1139 1524 214 152 81 chr11 72719566 72719664 -49124192 - MT2A LTR ERVL -4 529 452 5 1139 321 47 0 0 chr11 72719664 72719707 -49124149 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1139 1524 214 152 81 chr11 72719707 72720102 -49123754 - MT2A LTR ERVL -82 451 1 5 1139 418 263 34 62 chr11 72721300 72721446 -49122410 - B1_Mur1 SINE Alu 0 149 8 5 1139 1206 169 14 18 chr11 72722620 72722837 -49121019 - B3 SINE B2 0 216 1 5 1139 1307 20 0 0 chr11 72723000 72723146 -49120710 - B1_Mus2 SINE Alu 0 147 2 5 1139 1385 71 28 0 chr11 72723150 72723332 -49120524 - B2_Mm2 SINE B2 -8 187 1 5 1139 1046 205 19 24 chr11 72723916 72724126 -49119730 + B3 SINE B2 2 210 -6 5 1139 847 264 29 15 chr11 72724251 72724455 -49119401 - B3 SINE B2 -7 209 3 5 1139 228 254 0 107 chr11 72725107 72725182 -49118674 - MER117 DNA MER1_type -56 141 75 5 1139 804 276 119 20 chr11 72725609 72725860 -49117996 + B4A SINE B4 5 280 -12 5 1139 774 216 144 0 chr11 72725884 72726065 -49117791 + B3 SINE B2 3 209 -7 5 1139 828 274 54 0 chr11 72727522 72727726 -49116130 - B3 SINE B2 0 216 2 5 1139 531 296 45 30 chr11 72727780 72727982 -49115874 + B3 SINE B2 1 205 -11 5 1139 23 0 0 0 chr11 72730090 72730113 -49113743 + AT_rich Low_complexity Low_complexity 1 23 0 5 1139 223 333 102 42 chr11 72730154 72730192 -49113664 - B2_Mm2 SINE B2 -18 177 2 5 1139 675 195 109 0 chr11 72730192 72730320 -49113536 - RSINE1 SINE B4 -21 144 3 5 1139 562 209 9 9 chr11 72730359 72730465 -49113391 + RSINE1 SINE B4 3 108 -57 5 1139 348 257 41 7 chr11 72731432 72731577 -49112279 - L1M5 LINE L1 -1019 5127 4978 5 1139 377 319 0 17 chr11 72731807 72731922 -49111934 - PB1D10 SINE Alu -3 114 2 5 1139 286 217 116 0 chr11 72731949 72732018 -49111838 - B1_Mus2 SINE Alu -19 128 52 5 1139 349 260 0 0 chr11 72732142 72732219 -49111637 + ID_B1 SINE B4 142 218 -6 5 1139 450 264 190 142 chr11 72732233 72732405 -49111451 + B4A SINE B4 6 210 -82 5 1139 713 241 40 72 chr11 72732405 72732628 -49111228 + B3 SINE B2 1 216 0 5 1139 450 264 190 142 chr11 72732628 72732729 -49111127 + B4A SINE B4 211 292 0 5 1139 233 242 49 108 chr11 72732775 72732877 -49110979 + MT2B LTR ERVL 149 244 -357 5 1139 573 237 35 41 chr11 72732798 72732943 -49110913 + B1_Mur1 SINE Alu 6 149 0 5 1139 428 217 0 46 chr11 72733029 72733116 -49110740 - ID4_ SINE ID 0 83 1 5 1139 233 301 134 0 chr11 72733131 72733317 -49110539 - L1M5 LINE L1 -1572 4574 4364 5 1139 337 226 149 11 chr11 72733320 72733414 -49110442 + PB1D10 SINE Alu 2 108 -9 5 1139 249 196 44 16 chr11 72733559 72733649 -49110207 - L1M5 LINE L1 -1994 4152 4054 5 1139 933 172 0 7 chr11 72734730 72734876 -49108980 - B1_Mur4 SINE Alu -3 147 3 5 1139 242 250 33 121 chr11 72735005 72735096 -49108760 + MT2B2 LTR ERVL 158 240 -344 5 1139 440 253 0 42 chr11 72735016 72735111 -49108745 + PB1D10 SINE Alu 7 97 -20 5 1139 1644 27 0 5 chr11 72735173 72735361 -49108495 - B2_Mm1a SINE B2 -5 188 2 5 1139 597 303 40 0 chr11 72735392 72735544 -49108312 + RSINE1 SINE B4 3 160 -5 5 1139 210 204 20 0 chr11 72735554 72735603 -49108253 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 5 1139 506 259 140 61 chr11 72737085 72737364 -49106492 - Charlie1a DNA MER1_type -42 1413 1113 5 1139 190 292 32 63 chr11 72738241 72738336 -49105520 + L4 LINE RTE 1072 1163 -866 5 1139 22 0 0 0 chr11 72739308 72739330 -49104526 + AT_rich Low_complexity Low_complexity 1 22 0 5 1139 220 294 29 0 chr11 72740673 72740741 -49103115 - PB1D10 SINE Alu -17 100 31 5 1139 834 134 70 7 chr11 72741040 72741183 -49102673 + URR1A DNA MER1_type 6 157 -69 5 1139 285 29 0 0 chr11 72741259 72741293 -49102563 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1139 495 250 121 0 chr11 72741329 72741445 -49102411 + RSINE1 SINE B4 3 132 -33 5 1139 492 327 51 0 chr11 72741702 72741858 -49101998 - RSINE1 SINE B4 0 165 2 5 1139 240 374 54 24 chr11 72741858 72742022 -49101834 - MLT1K LTR MaLR -47 548 380 5 1139 262 262 93 46 chr11 72742515 72742623 -49101233 - PB1D10 SINE Alu 0 117 5 5 1139 502 257 184 0 chr11 72742874 72743010 -49100846 - B3 SINE B2 -7 209 49 5 1139 2342 315 131 74 chr11 72743140 72744130 -49099726 - MTE-int LTR MaLR -59 1521 452 5 1139 1175 81 0 0 chr11 72744130 72744278 -49099578 - B1_Mus1 SINE Alu 0 148 1 5 1139 2342 315 131 74 chr11 72744278 72744363 -49099493 - MTE-int LTR MaLR -1129 451 375 5 1139 743 177 21 28 chr11 72744363 72744508 -49099348 + B1_Mur3 SINE Alu 2 145 -4 5 1139 2342 315 131 74 chr11 72744508 72744598 -49099258 - MTE-int LTR MaLR -1206 374 287 5 1139 1531 169 57 128 chr11 72744598 72744695 -49099161 - ORR1C1 LTR MaLR 0 378 324 5 1139 881 134 21 14 chr11 72744695 72744839 -49099017 - B1_Mus2 SINE Alu 0 147 3 5 142 1531 169 57 128 chr11 72744839 72745148 -49098708 - ORR1C1 LTR MaLR -55 323 1 5 1140 787 271 73 0 chr11 72745148 72745366 -49098490 - MTE-int LTR MaLR -1305 275 42 5 1140 239 311 101 83 chr11 72745405 72745633 -49098223 - ORR1E LTR MaLR -1 358 127 5 1140 394 174 160 20 chr11 72745637 72745737 -49098119 + ORR1D1 LTR MaLR 1 114 -260 5 1140 3556 40 0 0 chr11 72745747 72746193 -49097663 + L1Md_F2 LINE L1 5141 5586 -297 5 1140 8302 45 3 0 chr11 72746193 72747182 -49096674 + L1Md_F2 LINE L1 5587 6578 -4 5 1140 710 197 245 5 chr11 72747182 72747386 -49096470 + ORR1D1 LTR MaLR 122 374 0 5 1140 475 286 18 0 chr11 72747397 72747509 -49096347 - ORR1E LTR MaLR -243 116 3 5 1140 1293 224 145 32 chr11 72747582 72747682 -49096174 - Lx8 LINE L1 -7 7466 7334 5 1140 309 82 0 0 chr11 72747682 72747731 -49096125 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 5 1140 234 0 0 0 chr11 72747731 72747757 -49096099 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1140 1293 224 145 32 chr11 72747757 72748130 -49095726 - Lx8 LINE L1 -140 7333 6939 5 1140 411 259 73 12 chr11 72748325 72748489 -49095367 + L1M4 LINE L1 2865 3038 -3108 5 1140 1260 57 0 6 chr11 72748703 72748863 -49094993 + B2_Mm2 SINE B2 3 161 -34 5 1140 288 0 0 0 chr11 72748864 72748896 -49094960 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 1140 480 233 107 16 chr11 72749012 72749134 -49094722 - ID_B1 SINE B4 -19 205 73 5 1140 237 186 17 0 chr11 72749223 72749282 -49094574 + L1M4 LINE L1 3246 3305 -2841 5 1140 256 271 81 12 chr11 72749288 72749374 -49094482 + PB1D7 SINE Alu 29 120 0 5 1140 418 318 88 65 chr11 72749409 72749695 -49094161 + ORR1E LTR MaLR 18 299 -75 5 1140 232 184 0 0 chr11 72749770 72749808 -49094048 - ORR1A3 LTR MaLR 0 346 309 5 1140 3213 31 0 35 chr11 72749875 72750274 -49093582 - L1Md_F2 LINE L1 -12 6570 6186 5 1140 1733 125 29 0 chr11 72750274 72750546 -49093310 - ORR1A3 LTR MaLR -46 280 1 5 1140 7400 144 74 5 chr11 72750546 72751861 -49091995 - ORR1A3-int LTR MaLR 0 1792 388 5 1140 706 268 55 76 chr11 72751655 72751946 -49091910 - MT2B2 LTR ERVL -297 287 3 5 1140 1146 105 87 0 chr11 72751957 72752129 -49091727 - B2_Mm2 SINE B2 -7 188 2 5 1140 1016 70 0 83 chr11 72752173 72752330 -49091526 + B1_Mm SINE Alu 1 144 -3 5 1140 684 0 0 0 chr11 72752330 72752406 -49091450 + (GAA)n Simple_repeat Simple_repeat 2 77 0 5 1140 1148 82 0 0 chr11 72752492 72752639 -49091217 - B1_Mus2 SINE Alu 0 147 1 5 1140 253 171 29 0 chr11 72752658 72752710 -49091146 - ORR1A3-int LTR MaLR -1037 926 886 5 1140 912 278 102 54 chr11 72752712 72753434 -49090422 + L1M4 LINE L1 3440 4196 -1950 5 1140 441 0 0 0 chr11 72753619 72753668 -49090188 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1140 331 293 123 40 chr11 72753877 72754129 -49089727 - MLT1F2 LTR MaLR -68 586 314 6 1140 819 180 28 14 chr11 72754165 72754306 -49089550 - B1_Mur1 SINE Alu 0 149 7 6 1140 438 282 67 97 chr11 72754166 72754331 -49089525 - B4 SINE B4 -63 229 70 6 1140 337 348 55 24 chr11 72754348 72754513 -49089343 - MLT1F2 LTR MaLR -383 177 8 6 1140 696 317 6 30 chr11 72754724 72754893 -49088963 - RSINE1 SINE B4 0 165 1 6 1140 28 0 0 0 chr11 72754893 72754921 -49088935 + AT_rich Low_complexity Low_complexity 1 28 0 6 1140 325 270 14 0 chr11 72754921 72754995 -49088861 - ID4_ SINE ID -1 82 8 6 1140 314 355 18 78 chr11 72755560 72755875 -49087981 - L1M5 LINE L1 -688 5436 5145 6 1140 457 216 37 70 chr11 72756113 72756290 -49087566 + MLT1A1 LTR MaLR 200 408 0 6 1140 266 253 31 103 chr11 72756946 72757043 -49086813 + MLT1K LTR MaLR 504 593 -2 6 1140 274 184 20 0 chr11 72757399 72757448 -49086408 + PB1D7 SINE Alu 7 56 -64 6 1140 276 30 0 0 chr11 72757450 72757483 -49086373 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1140 238 194 14 82 chr11 72757522 72757595 -49086261 - L1M5 LINE L1 -896 5250 5183 6 1140 322 287 79 0 chr11 72757595 72757696 -49086160 - PB1D10 SINE Alu -3 114 6 6 1140 663 227 90 7 chr11 72757613 72757768 -49086088 - ID_B1 SINE B4 -55 169 2 6 1140 1176 99 51 39 chr11 72757791 72757969 -49085887 - B2_Mm2 SINE B2 -14 181 2 6 1140 323 262 38 15 chr11 72757969 72758101 -49085755 - L1M5 LINE L1 -959 5187 5053 6 1140 928 220 97 0 chr11 72759387 72759573 -49084283 - B3 SINE B2 -11 205 2 6 1140 252 0 0 0 chr11 72760525 72760553 -49083303 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1140 324 0 0 0 chr11 72760553 72760588 -49083268 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1140 252 273 0 0 chr11 72760626 72760692 -49083164 + MLT1K LTR MaLR 499 564 -31 6 1140 722 287 58 86 chr11 72762081 72762214 -49081642 + ORR1E LTR MaLR 1 134 -225 6 1140 1574 150 68 73 chr11 72762214 72762434 -49081422 + RMER17C LTR ERVK 1 219 -191 6 1140 510 46 0 0 chr11 72762434 72762499 -49081357 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1140 1574 150 68 73 chr11 72762499 72762687 -49081169 + RMER17C LTR ERVK 220 407 -3 6 1140 722 287 58 86 chr11 72762687 72762912 -49080944 + ORR1E LTR MaLR 135 349 -10 6 1140 654 153 0 67 chr11 72762934 72763029 -49080827 + B1_Mur2 SINE Alu 39 133 -16 6 1140 2113 116 183 14 chr11 72763029 72763389 -49080467 - MTC LTR MaLR 0 421 1 6 1140 654 153 0 67 chr11 72763389 72763412 -49080444 + B1_Mur2 SINE Alu 134 149 0 6 1140 1925 96 132 0 chr11 72763540 72763821 -49080035 + ORR1A3 LTR MaLR 1 318 -8 6 1140 309 241 23 81 chr11 72763964 72764050 -49079806 + ID4 SINE ID 2 82 -1 6 1140 376 241 62 9 chr11 72764432 72764545 -49079311 + PB1D7 SINE Alu 1 119 -1 6 1140 396 329 154 62 chr11 72764915 72765382 -49078474 - MLT1L LTR MaLR -89 521 12 6 1140 369 251 188 23 chr11 72765389 72765560 -49078296 - MIRb SINE MIR -66 202 7 6 1140 195 329 84 12 chr11 72766138 72766221 -49077635 - MIRm SINE MIR -103 173 85 6 1140 265 153 116 28 chr11 72766520 72766611 -49077245 + PB1D7 SINE Alu 46 144 -5 6 1140 585 0 0 0 chr11 72766637 72766702 -49077154 + (CAG)n Simple_repeat Simple_repeat 3 67 0 6 1140 218 0 94 0 chr11 72768314 72768346 -49075510 + (CACCC)n Simple_repeat Simple_repeat 3 37 0 6 1140 588 135 125 0 chr11 72769328 72769432 -49074424 + B1_Mur4 SINE Alu 22 138 -12 6 1140 567 0 0 0 chr11 72769432 72769495 -49074361 + (CAAAA)n Simple_repeat Simple_repeat 4 66 0 6 1140 403 224 73 27 chr11 72769553 72769663 -49074193 - PB1D10 SINE Alu 0 117 3 6 1140 553 114 307 0 chr11 72770223 72770337 -49073519 + B1_Mur4 SINE Alu 1 149 -1 6 1140 767 307 100 46 chr11 72770941 72771330 -49072526 + MLT1J2 LTR MaLR 38 447 -1 6 1140 196 241 93 0 chr11 72771333 72771404 -49072452 - MIRc SINE MIR -133 135 56 6 1140 927 139 0 0 chr11 72771466 72771603 -49072253 + B1_Mus1 SINE Alu 11 147 -1 6 1140 291 240 0 26 chr11 72771722 72771799 -49072057 + CT-rich Low_complexity Low_complexity 3 77 0 6 1140 326 314 129 0 chr11 72771801 72771941 -49071915 - HAL1-3A_ME LINE L1 -417 2441 2284 6 1140 477 0 0 0 chr11 72772163 72772216 -49071640 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1140 192 272 45 90 chr11 72773286 72773375 -49070481 + L3 LINE CR1 3498 3582 -907 6 1140 523 246 9 0 chr11 72773460 72773570 -49070286 + PB1D7 SINE Alu 5 115 -5 6 1140 687 84 0 0 chr11 72775775 72775870 -49067986 + (GA)n Simple_repeat Simple_repeat 1 95 0 6 1140 471 312 72 19 chr11 72776592 72776802 -49067054 - MIR SINE MIR -14 248 28 6 1140 384 215 12 25 chr11 72777657 72777738 -49066118 - ID4_ SINE ID -2 81 2 6 1140 30 0 0 0 chr11 72777738 72777768 -49066088 + AT_rich Low_complexity Low_complexity 1 30 0 6 1140 249 58 38 19 chr11 72777848 72777901 -49065955 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1140 270 0 0 0 chr11 72778284 72778314 -49065542 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1140 192 118 0 0 chr11 72779738 72779772 -49064084 - L2b LINE L2 -35 3340 3307 6 1140 502 184 60 60 chr11 72781115 72781231 -49062625 + PB1D7 SINE Alu 1 116 -4 6 1140 434 314 52 7 chr11 72781428 72781582 -49062274 - MER3 DNA MER1_type -45 164 4 6 1140 456 161 0 0 chr11 72781690 72781771 -49062085 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1140 1269 27 0 0 chr11 72781836 72781983 -49061873 + B1_Mus1 SINE Alu 2 148 0 6 1140 970 155 153 16 chr11 72783269 72783459 -49060397 + B3 SINE B2 1 216 0 6 1140 240 172 77 15 chr11 72783780 72783845 -49060011 + MIR3 SINE MIR 86 154 -54 6 1140 365 241 181 27 chr11 72784580 72784729 -49059127 - MER20 DNA MER1_type -9 210 39 6 1140 253 250 82 10 chr11 72785315 72785412 -49058444 - MER5A DNA MER1_type -82 107 4 6 1140 542 250 105 33 chr11 72786634 72786787 -49057069 + RSINE1 SINE B4 2 165 0 6 1140 303 197 0 5 chr11 72786870 72786934 -49056922 - B2_Mm2 SINE B2 -107 109 48 6 1140 1300 64 45 28 chr11 72786980 72787157 -49056699 - B2_Mm1t SINE B2 -12 181 2 6 1140 321 253 99 0 chr11 72787188 72787279 -49056577 - HAL1-3A_ME LINE L1 -784 2074 1975 6 1140 360 148 0 0 chr11 72787280 72787341 -49056515 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 6 1140 502 149 106 0 chr11 72787346 72787440 -49056416 - B1_Mur1 SINE Alu -43 106 3 6 1140 222 37 0 0 chr11 72787440 72787467 -49056389 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1140 532 316 58 25 chr11 72787547 72787787 -49056069 - MIR SINE MIR -14 248 1 6 1140 218 283 17 0 chr11 72789343 72789403 -49054453 + MIR SINE MIR 79 139 -69 6 1140 207 0 0 0 chr11 72791527 72791550 -49052306 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 6 1140 336 245 9 148 chr11 72791554 72791669 -49052187 + PB1D10 SINE Alu 14 112 -5 6 1140 470 306 66 28 chr11 72792406 72792599 -49051257 + ID_B1 SINE B4 8 233 -59 6 1140 374 0 22 0 chr11 72794953 72794999 -49048857 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1140 271 281 4 21 chr11 72795010 72795088 -49048768 - PB1D10 SINE Alu -36 81 17 6 1140 588 267 71 123 chr11 72796475 72796727 -49047129 - B4A SINE B4 -52 240 2 6 1140 1497 65 0 5 chr11 72797912 72798097 -49045759 - B2_Mm2 SINE B2 -10 185 2 6 1140 1021 190 5 30 chr11 72798098 72798299 -49045557 - URR1B DNA MER1_type -24 201 6 6 1140 584 223 14 80 chr11 72798784 72798959 -49044897 - B4A SINE B4 -1 291 121 6 1140 1035 215 33 9 chr11 72799050 72799261 -49044595 - B3 SINE B2 0 216 1 6 1140 424 222 6 168 chr11 72799267 72799326 -49044530 - RCHARR1 DNA MER1_type 0 974 932 6 1140 1165 69 7 0 chr11 72799326 72799471 -49044385 + B1_Mus2 SINE Alu 2 147 0 6 1140 424 222 6 168 chr11 72799471 72799584 -49044272 - RCHARR1 DNA MER1_type -43 931 830 6 1140 794 135 8 8 chr11 72799597 72799724 -49044132 + B1_Mur1 SINE Alu 23 149 0 6 1140 978 205 50 35 chr11 72799726 72799928 -49043928 + B3 SINE B2 2 206 -10 6 1140 198 0 0 0 chr11 72799928 72799950 -49043906 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1140 696 157 350 6 chr11 72799958 72800118 -49043738 + B3 SINE B2 2 216 0 6 1140 535 335 30 68 chr11 72800172 72800406 -49043450 - MTE2a LTR MaLR -154 225 1 6 1140 314 331 70 16 chr11 72800463 72800592 -49043264 + ID_B1 SINE B4 1 136 -88 6 1140 238 349 28 0 chr11 72806981 72807087 -49036769 + L1ME1 LINE L1 5763 5871 -573 6 1140 309 330 0 11 chr11 72807090 72807185 -49036671 + B1F1 SINE Alu 1 94 -55 6 1140 487 292 0 8 chr11 72808570 72808691 -49035165 + PB1D7 SINE Alu 1 120 0 6 1140 321 26 0 0 chr11 72808691 72808729 -49035127 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1140 401 291 85 59 chr11 72808730 72808888 -49034968 + L1ME1 LINE L1 5862 6026 -153 6 1140 538 198 207 0 chr11 72808888 72809009 -49034847 + B1_Mus2 SINE Alu 1 146 -1 6 1140 401 291 85 59 chr11 72809009 72809120 -49034736 + L1ME1 LINE L1 6027 6138 -41 6 1140 531 279 144 11 chr11 72809148 72809329 -49034527 + ID_B1 SINE B4 20 224 0 6 1140 308 346 19 0 chr11 72810138 72810245 -49033611 + MIRb SINE MIR 79 187 -81 6 1140 297 0 0 0 chr11 72810357 72810390 -49033466 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1140 694 300 101 50 chr11 72810425 72810702 -49033154 - B4A SINE B4 -1 291 1 6 1140 191 246 42 8 chr11 72810900 72811019 -49032837 + GA-rich Low_complexity Low_complexity 3 125 0 6 1140 342 0 0 0 chr11 72811414 72811452 -49032404 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1140 492 18 0 0 chr11 72815047 72815104 -49028752 + (CAGG)n Simple_repeat Simple_repeat 2 58 0 6 1140 548 222 60 60 chr11 72815386 72815520 -49028336 + B1_Mur2 SINE Alu 2 135 -14 7 1140 658 213 48 34 chr11 72815556 72815702 -49028154 - B1_Mur3 SINE Alu -1 148 1 7 1140 1353 102 16 0 chr11 72815796 72815983 -49027873 - B2_Mm2 SINE B2 -5 190 1 7 1140 828 102 369 0 chr11 72815992 72816149 -49027707 - B3 SINE B2 -1 215 1 7 1140 247 215 59 44 chr11 72816173 72816241 -49027615 - ID4_ SINE ID 0 83 15 7 1140 210 71 0 0 chr11 72816259 72816287 -49027569 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1140 469 262 26 58 chr11 72816301 72816455 -49027401 + B1F SINE Alu 1 149 0 7 1140 1122 82 0 45 chr11 72816541 72816695 -49027161 + B1_Mus1 SINE Alu 2 148 0 7 1140 333 0 0 0 chr11 72816714 72816751 -49027105 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1140 842 274 129 12 chr11 72816767 72817107 -49026749 - L1MB8 LINE L1 -232 5946 5567 7 1140 834 241 111 68 chr11 72817171 72817451 -49026405 - MTEa LTR MaLR 0 379 88 7 1140 687 208 147 37 chr11 72817453 72817643 -49026213 + ID_B1 SINE B4 5 215 -9 7 1140 1471 249 48 17 chr11 72817662 72818018 -49025838 - MTE-int LTR MaLR -1204 376 10 7 1140 1094 298 94 29 chr11 72818026 72818507 -49025349 - MT2A LTR ERVL 0 533 22 7 1140 312 287 36 36 chr11 72818549 72818661 -49025195 + L2a LINE L2 3309 3420 -6 7 1140 236 256 152 13 chr11 72818972 72819051 -49024805 - MIRc SINE MIR -98 170 81 7 1140 541 280 75 8 chr11 72819258 72819391 -49024465 + B3A SINE B2 6 147 -51 7 1140 351 0 0 0 chr11 72819410 72819449 -49024407 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1140 274 333 109 36 chr11 72820411 72820576 -49023280 - MLT1L LTR MaLR -24 586 410 7 1140 600 14 0 0 chr11 72820681 72820750 -49023106 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1140 241 279 125 0 chr11 72820784 72820888 -49022968 - MLT1L LTR MaLR -382 213 97 7 1140 333 0 0 0 chr11 72820972 72821009 -49022847 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1140 286 271 247 6 chr11 72821036 72821214 -49022642 - MIR SINE MIR 0 262 42 7 1140 455 134 12 0 chr11 72823794 72823876 -49019980 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 7 1140 443 230 35 17 chr11 72823882 72823997 -49019859 - PB1D10 SINE Alu 0 117 1 7 1140 234 0 0 0 chr11 72824101 72824127 -49019729 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1140 276 304 84 49 chr11 72824214 72824356 -49019500 + MIR SINE MIR 46 192 -70 7 1140 186 306 89 36 chr11 72824907 72825019 -49018837 - L2b LINE L2 -38 3349 3232 7 1140 610 226 0 0 chr11 72825019 72825134 -49018722 + PB1D10 SINE Alu 1 115 -2 7 1140 580 204 84 60 chr11 72825147 72825314 -49018542 + B3A SINE B2 27 197 -1 7 1140 193 325 58 35 chr11 72825429 72825515 -49018341 - L2b LINE L2 -286 3089 3002 7 1140 409 303 49 0 chr11 72825612 72825734 -49018122 + RSINE1 SINE B4 1 128 -37 7 1140 184 77 25 25 chr11 72826566 72826606 -49017250 + (ATATG)n Simple_repeat Simple_repeat 4 43 0 7 1140 414 249 182 6 chr11 72827936 72828106 -49015750 - MER3 DNA MER1_type -1 208 9 7 1140 274 310 126 0 chr11 72829127 72829214 -49014642 + MER3 DNA MER1_type 6 103 -106 7 1140 180 0 0 0 chr11 72829238 72829258 -49014598 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 7 1140 351 299 0 76 chr11 72829259 72829364 -49014492 - PB1D10 SINE Alu -20 97 1 7 1140 229 307 78 9 chr11 72829725 72829840 -49014016 + L2 LINE L2 1956 2078 -1341 7 1140 217 273 0 0 chr11 72830025 72830069 -49013787 + MIRb SINE MIR 193 236 -32 7 1140 270 0 0 0 chr11 72830083 72830113 -49013743 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1140 868 153 14 14 chr11 72830250 72830396 -49013460 - B1_Mus1 SINE Alu -1 147 2 7 1140 564 210 26 2 chr11 72830506 72830668 -49013188 + B3A SINE B2 2 168 -27 7 1140 348 364 34 39 chr11 72830681 72830887 -49012969 + MLT1J LTR MaLR 226 430 -82 7 1140 330 265 0 0 chr11 72831014 72831082 -49012774 + ID4_ SINE ID 8 75 -8 7 1140 197 204 45 0 chr11 72831100 72831144 -49012712 + L2 LINE L2 2350 2395 -1024 7 1140 254 331 185 31 chr11 72831165 72831424 -49012432 - L2b LINE L2 -2 3373 3075 7 1140 486 0 0 0 chr11 72831639 72831693 -49012163 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1140 26 0 0 0 chr11 72832469 72832495 -49011361 + GC_rich Low_complexity Low_complexity 1 26 0 7 1140 282 356 88 45 chr11 72833900 72834274 -49009582 + L2a LINE L2 2974 3363 -63 7 1140 269 328 131 39 chr11 72834582 72834788 -49009068 - L2c LINE L2 -221 3166 2942 7 1140 753 138 107 8 chr11 72835887 72836018 -49007838 + B1_Mur3 SINE Alu 1 144 -5 7 1140 372 94 0 0 chr11 72836020 72836073 -49007783 + (TATG)n Simple_repeat Simple_repeat 2 54 0 7 1140 278 198 211 29 chr11 72837443 72837547 -49006309 - L2a LINE L2 -8 3418 3296 7 1140 189 264 94 0 chr11 72838128 72838181 -49005675 + L3 LINE CR1 1615 1672 -2817 7 1140 299 248 55 73 chr11 72841962 72842071 -49001785 + MIRc SINE MIR 49 155 -113 7 1140 351 275 0 0 chr11 72842071 72842151 -49001705 + ID4 SINE ID 2 81 -2 7 1140 23 0 0 0 chr11 72842157 72842180 -49001676 + AT_rich Low_complexity Low_complexity 1 23 0 7 1140 218 268 18 0 chr11 72842959 72843015 -49000841 - MIRm SINE MIR -134 142 86 7 1140 853 221 57 48 chr11 72843227 72843436 -49000420 + ID_B1 SINE B4 1 211 -13 7 1140 738 93 0 0 chr11 72843436 72843544 -49000312 + (CCA)n Simple_repeat Simple_repeat 3 110 0 7 1140 504 280 0 8 chr11 72843554 72843673 -49000183 - PB1D9 SINE Alu -2 118 1 7 1140 818 170 14 14 chr11 72843683 72843826 -49000030 - B1_Mur2 SINE Alu 0 149 7 7 1140 297 0 0 0 chr11 72844135 72844168 -48999688 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1140 205 262 81 72 chr11 72844949 72845060 -48998796 - L2c LINE L2 -225 3162 3051 7 1140 271 341 70 32 chr11 72845179 72845364 -48998492 - L2c LINE L2 -570 2849 2658 7 1140 294 95 0 0 chr11 72846206 72846248 -48997608 + (GGA)n Simple_repeat Simple_repeat 2 43 0 7 1140 400 242 116 0 chr11 72846340 72846435 -48997421 - PB1D10 SINE Alu -11 106 1 7 1140 203 0 0 0 chr11 72847036 72847060 -48996796 + MIRc SINE MIR 20 43 -225 7 1140 306 233 0 0 chr11 72847928 72847988 -48995868 + Charlie12 DNA MER1_type 33 92 -2781 7 1140 420 20 0 0 chr11 72848010 72848059 -48995797 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1140 266 321 25 0 chr11 72848325 72848406 -48995450 + ID4 SINE ID 1 83 0 7 1140 511 296 20 62 chr11 72848428 72848507 -48995349 - L1MC4 LINE L1 -5 8037 7962 7 1140 1141 181 15 5 chr11 72848507 72848713 -48995143 - B3 SINE B2 -7 209 2 7 1140 511 296 20 62 chr11 72848713 72848925 -48994931 - L1MC4 LINE L1 -81 7961 7758 7 1140 317 294 58 10 chr11 72849123 72849226 -48994630 - B1_Mur3 SINE Alu -11 138 31 7 1140 416 67 0 16 chr11 72849363 72849424 -48994432 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 7 1140 234 0 0 0 chr11 72849425 72849451 -48994405 + (TGG)n Simple_repeat Simple_repeat 1 26 0 7 1140 196 268 56 79 chr11 72849775 72849864 -48993992 + L2b LINE L2 3283 3369 -6 7 1140 245 292 45 0 chr11 72852990 72853079 -48990777 - MER94 DNA AcHobo -27 107 15 7 1140 313 172 0 17 chr11 72855772 72855831 -48988025 + 4.5SRNA scRNA scRNA 29 86 -8 7 1140 873 37 9 0 chr11 72855779 72855888 -48987968 + B1_Mus1 SINE Alu 39 148 0 7 1140 228 264 98 98 chr11 72855781 72855903 -48987953 + B4A SINE B4 125 246 -46 7 1140 1308 65 0 6 chr11 72855922 72856093 -48987763 - B2_Mm2 SINE B2 -25 170 1 7 1140 288 360 44 38 chr11 72856234 72856393 -48987463 + MIRb SINE MIR 37 196 -72 7 1140 537 248 25 63 chr11 72858007 72858166 -48985690 - ID_B1 SINE B4 -44 180 28 7 1140 27 49 0 0 chr11 72858197 72858238 -48985618 + AT_rich Low_complexity Low_complexity 1 41 0 7 1140 279 330 113 0 chr11 72858269 72858366 -48985490 - PB1D7 SINE Alu -12 108 1 7 1140 213 254 17 0 chr11 72858371 72858430 -48985426 + (TATG)n Simple_repeat Simple_repeat 3 62 0 7 1140 822 195 59 17 chr11 72858437 72858612 -48985244 - B3A SINE B2 -37 179 1 7 1140 226 280 0 0 chr11 72858636 72858686 -48985170 - B3A SINE B2 -138 60 11 7 1140 756 244 128 9 chr11 72858678 72858889 -48984967 - B4A SINE B4 -55 237 2 7 1140 3326 96 139 14 chr11 72858994 72859513 -48984343 - MT2B2 LTR ERVL 0 584 1 7 1140 718 237 3 25 chr11 72859822 72859979 -48983877 + ID_B1 SINE B4 71 223 -69 7 1140 293 272 12 0 chr11 72859979 72860060 -48983796 + ID4 SINE ID 2 83 0 7 1140 329 319 33 61 chr11 72860060 72860082 -48983774 + B4A SINE B4 224 245 -47 7 1140 194 276 236 9 chr11 72860255 72860361 -48983495 - MIRc SINE MIR -54 214 85 7 1140 585 257 0 87 chr11 72860730 72860879 -48982977 - ID_B1 SINE B4 -8 216 81 7 1140 464 221 19 9 chr11 72860885 72860990 -48982866 - PB1D9 SINE Alu -13 107 2 7 1140 220 358 139 67 chr11 72862412 72862555 -48981301 - L2b LINE L2 0 3387 3216 7 1140 399 21 0 0 chr11 72862555 72862603 -48981253 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1140 250 358 139 67 chr11 72862603 72862905 -48980951 - L2b LINE L2 -172 3215 2910 7 1140 22 0 0 0 chr11 72863732 72863754 -48980102 + AT_rich Low_complexity Low_complexity 1 22 0 7 1140 267 317 24 0 chr11 72863787 72863869 -48979987 - RSINE1 SINE B4 0 165 82 7 1140 332 56 0 36 chr11 72863872 72863882 -48979974 + (TTTTG)n Simple_repeat Simple_repeat 2 10 0 7 1140 1059 65 50 7 chr11 72863882 72864022 -48979834 - B1_Mus1 SINE Alu 0 148 3 7 1140 332 56 0 36 chr11 72864022 72864067 -48979789 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1140 896 208 0 7 chr11 72864083 72864233 -48979623 - B1_Mur3 SINE Alu 0 149 1 7 1140 740 267 24 14 chr11 72864264 72864477 -48979379 - B3 SINE B2 -1 215 1 8 1140 328 243 101 55 chr11 72864512 72864621 -48979235 - B4A SINE B4 -149 143 30 8 1140 1155 48 170 0 chr11 72864965 72865130 -48978726 - B2_Mm2 SINE B2 -2 193 1 8 1140 1242 166 5 28 chr11 72865202 72865419 -48978437 - B3 SINE B2 -4 212 1 8 1140 1230 68 0 0 chr11 72865685 72865833 -48978023 + B1_Mus1 SINE Alu 1 148 0 8 1140 430 158 25 62 chr11 72865857 72865938 -48977918 + B4A SINE B4 3 80 -212 8 1140 529 278 95 0 chr11 72867637 72867763 -48976093 - ID_B1 SINE B4 -1 223 86 8 1140 423 276 180 31 chr11 72868014 72868208 -48975648 - MIRb SINE MIR -9 259 37 8 1140 368 226 32 40 chr11 72868307 72868406 -48975450 - B1F2 SINE Alu -5 112 1 8 1140 222 313 149 0 chr11 72868620 72868687 -48975169 + MIR SINE MIR 22 98 -164 8 1140 222 279 0 32 chr11 72868716 72868779 -48975077 + MIR SINE MIR 198 258 -4 8 1140 242 246 30 15 chr11 72869189 72869255 -48974601 - L3 LINE CR1 -3 4486 4420 8 1140 1028 137 58 32 chr11 72869452 72869641 -48974215 + B2_Mm2 SINE B2 1 194 -1 8 1140 295 260 119 10 chr11 72869687 72869788 -48974068 - PB1D7 SINE Alu -6 114 3 8 1140 218 337 9 106 chr11 72870197 72870310 -48973546 - L3 LINE CR1 -1155 3334 3233 8 1140 231 162 0 0 chr11 72870596 72870633 -48973223 - B1_Mus2 SINE Alu -110 37 1 8 1140 510 176 27 18 chr11 72870663 72870773 -48973083 - PB1D9 SINE Alu 0 120 10 8 1140 288 244 114 68 chr11 72870699 72870831 -48973025 - B4 SINE B4 -123 169 32 8 1140 240 261 0 0 chr11 72871442 72871488 -48972368 - ID4 SINE ID -36 47 2 8 1140 290 238 157 10 chr11 72871491 72871593 -48972263 - PB1D10 SINE Alu 0 117 1 8 1140 1090 120 26 2 chr11 72871609 72871789 -48972067 + B2_Mm1t SINE B2 6 192 -6 8 1140 783 178 23 79 chr11 72871823 72872000 -48971856 + B2_Mm2 SINE B2 27 193 -2 8 1140 885 82 176 0 chr11 72872023 72872182 -48971674 + L1Md_F2 LINE L1 6396 6582 0 8 1140 274 196 0 0 chr11 72872277 72872323 -48971533 + ID4_ SINE ID 2 47 -36 8 1140 23 0 0 0 chr11 72872347 72872370 -48971486 + AT_rich Low_complexity Low_complexity 1 23 0 8 1140 1877 252 48 26 chr11 72872399 72873076 -48970780 - Lx5 LINE L1 0 7058 6464 8 1140 818 179 13 40 chr11 72873308 72873459 -48970397 - B1_Mur1 SINE Alu -2 147 1 8 1140 222 233 23 0 chr11 72873701 72873744 -48970112 - PB1D9 SINE Alu -70 50 7 8 1140 1477 49 11 0 chr11 72873775 72873960 -48969896 - B2_Mm2 SINE B2 0 195 9 8 1140 419 59 0 0 chr11 72873954 72874005 -48969851 - B2_Mm2 SINE B2 -142 53 3 8 1140 251 260 571 8 chr11 72874048 72874183 -48969673 - B3 SINE B2 -5 211 1 8 1140 431 321 29 91 chr11 72874194 72874369 -48969487 + Charlie12 DNA MER1_type 1 164 -2709 8 1140 457 275 50 111 chr11 72874225 72874405 -48969451 - RMER30 DNA MER1_type -28 174 6 8 1140 1225 264 56 48 chr11 72874500 72874576 -48969280 + L1MA6 LINE L1 5534 5603 -697 8 1140 1446 70 43 0 chr11 72874576 72874763 -48969093 + B2_Mm2 SINE B2 1 195 0 8 1140 1225 264 56 48 chr11 72874763 72874916 -48968940 + L1MA6 LINE L1 5604 5751 -549 8 1140 326 257 68 0 chr11 72874916 72874990 -48968866 - ID4_ SINE ID -4 79 1 8 1140 1225 264 56 48 chr11 72874990 72875404 -48968452 + L1MA6 LINE L1 5752 6183 -117 8 1140 694 252 14 0 chr11 72875411 72875550 -48968306 - B1F SINE Alu 0 149 9 8 1140 274 346 12 73 chr11 72875550 72875569 -48968287 - B4A SINE B4 -61 196 77 8 1140 767 59 242 17 chr11 72875592 72875702 -48968154 + B1_Mus1 SINE Alu 1 139 -9 8 1140 192 40 0 0 chr11 72875702 72875727 -48968129 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1141 2839 53 93 45 chr11 72876066 72876464 -48967392 - L1Md_F2 LINE L1 -12 6570 6154 8 1141 438 294 109 47 chr11 72876676 72876951 -48966905 - B4 SINE B4 0 292 1 8 1141 2439 89 72 52 chr11 72876965 72877368 -48966488 + IAPLTR2a LTR ERVK 1 411 0 8 1141 189 0 0 0 chr11 72877420 72877441 -48966415 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1141 216 0 0 0 chr11 72877441 72877464 -48966392 + (TA)n Simple_repeat Simple_repeat 1 24 0 8 1141 573 202 35 0 chr11 72877781 72877895 -48965961 - PB1D9 SINE Alu -2 118 1 8 1141 711 60 11 0 chr11 72877966 72878072 -48965784 - B1_Mus2 SINE Alu 0 149 43 8 1141 230 286 68 41 chr11 72878008 72878081 -48965775 - RLTR25B LTR ERVK -519 509 435 8 1141 182 289 90 26 chr11 72879083 72879161 -48964695 - L4 LINE RTE -601 1428 1346 8 1141 193 208 20 20 chr11 72880687 72880736 -48963120 - L2a LINE L2 -91 3335 3287 8 1141 492 309 52 52 chr11 72880793 72880967 -48962889 + B3A SINE B2 8 181 -17 8 1141 828 185 7 33 chr11 72881641 72881792 -48962064 - B1_Mus2 SINE Alu 0 147 1 8 1141 205 152 0 0 chr11 72882886 72882919 -48960937 + CT-rich Low_complexity Low_complexity 2 34 0 8 1141 1248 34 0 7 chr11 72882920 72883067 -48960789 - B1_Mus2 SINE Alu -1 146 1 8 1141 298 271 0 14 chr11 72883071 72883142 -48960714 + ID_B1 SINE B4 153 222 -2 8 1141 946 281 118 3 chr11 72883527 72883908 -48959948 - Lx8 LINE L1 -195 7278 6854 8 1141 730 232 14 0 chr11 72883945 72884087 -48959769 - ID_B1 SINE B4 -15 209 66 8 1141 680 133 160 23 chr11 72885132 72885263 -48958593 + B1_Mur3 SINE Alu 1 149 0 8 1141 317 242 194 29 chr11 72885447 72885617 -48958239 - B3A SINE B2 0 198 1 8 1141 887 273 48 88 chr11 72885693 72885889 -48957967 + MER82 DNA MER2_type 100 279 -374 8 1141 1239 41 0 0 chr11 72885889 72886036 -48957820 - B1_Mus2 SINE Alu 0 147 1 8 1141 887 273 48 88 chr11 72886036 72886112 -48957744 + MER82 DNA MER2_type 280 361 -292 8 1141 685 194 32 8 chr11 72886116 72886241 -48957615 - B1_Mur3 SINE Alu -21 128 1 8 1141 322 372 108 0 chr11 72886391 72886520 -48957336 + MER82 DNA MER2_type 504 646 -7 8 1141 273 57 0 0 chr11 72886756 72886791 -48957065 + (GGA)n Simple_repeat Simple_repeat 2 36 0 8 1141 276 318 8 78 chr11 72887026 72887166 -48956690 - ID2 SINE ID -16 136 2 8 1141 705 205 87 2 chr11 72887170 72887315 -48956541 - B1_Mur3 SINE Alu -1 148 1 8 1141 850 231 10 48 chr11 72887329 72887538 -48956318 - B3 SINE B2 0 216 16 8 1141 1417 54 43 11 chr11 72887538 72887725 -48956131 - B2_Mm2 SINE B2 -1 194 2 8 1141 324 268 103 11 chr11 72887823 72887910 -48955946 - RSINE1 SINE B4 -67 98 4 8 1141 243 0 0 0 chr11 72887910 72887937 -48955919 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8 1141 366 295 72 24 chr11 72887937 72887965 -48955891 - B1F SINE Alu -13 136 109 8 1141 198 0 0 0 chr11 72887965 72887987 -48955869 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 8 1141 366 295 72 24 chr11 72887987 72888083 -48955773 - B1F SINE Alu -41 108 7 8 1141 27 29 0 0 chr11 72888342 72888376 -48955480 + AT_rich Low_complexity Low_complexity 1 34 0 8 1141 1146 62 0 20 chr11 72888377 72888526 -48955330 + B1_Mus2 SINE Alu 1 146 -1 8 1141 240 310 57 89 chr11 72888572 72888696 -48955160 - B1F SINE Alu -9 140 21 8 1141 320 234 174 97 chr11 72889412 72889607 -48954249 + RMER21B LTR ERV1 350 689 -258 8 1141 29 47 0 0 chr11 72889816 72889859 -48953997 + AT_rich Low_complexity Low_complexity 1 43 0 8 1141 288 250 0 0 chr11 72890823 72890875 -48952981 - B1_Mur4 SINE Alu -96 54 3 8 1141 1730 219 47 25 chr11 72890877 72891284 -48952572 + MTD LTR MaLR 4 419 0 8 1141 899 226 44 0 chr11 72891916 72892097 -48951759 - B3 SINE B2 -25 191 3 8 1141 22 0 0 0 chr11 72893452 72893474 -48950382 + AT_rich Low_complexity Low_complexity 1 22 0 8 1141 865 228 141 3 chr11 72895256 72895560 -48948296 - L1MB7 LINE L1 -16 6168 5823 8 1141 285 29 0 0 chr11 72895572 72895606 -48948250 + (TC)n Simple_repeat Simple_repeat 2 35 0 8 1141 318 50 0 0 chr11 72895606 72895645 -48948211 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1141 446 217 179 0 chr11 72895656 72895762 -48948094 - B1_Mur3 SINE Alu -21 128 4 8 1141 228 245 80 54 chr11 72895959 72895979 -48947877 - L1MB7 LINE L1 -490 5684 5668 8 1141 957 110 20 27 chr11 72895979 72896128 -48947728 - B1_Mur3 SINE Alu 0 149 2 8 1141 297 214 100 12 chr11 72896128 72896219 -48947637 - L1MB7 LINE L1 -507 5667 5570 8 1141 344 247 25 0 chr11 72896311 72896392 -48947464 - ID4 SINE ID 0 83 1 8 1141 243 182 0 0 chr11 72896397 72896441 -48947415 - L1MB7 LINE L1 -746 5434 5391 8 1141 811 145 89 0 chr11 72896641 72896765 -48947091 - B1_Mus2 SINE Alu -12 135 1 8 1141 1292 63 102 11 chr11 72896891 72897050 -48946806 + B2_Mm2 SINE B2 2 177 -18 8 1141 351 0 0 0 chr11 72897050 72897089 -48946767 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 8 1141 1292 63 102 11 chr11 72897089 72897106 -48946750 + B2_Mm2 SINE B2 178 194 -1 8 1141 302 24 48 0 chr11 72897335 72897377 -48946479 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 8 1141 1065 110 0 0 chr11 72897377 72897512 -48946344 - B1_Mus2 SINE Alu -11 136 2 8 1141 611 295 126 8 chr11 72897607 72897853 -48946003 + MamRep137 DNA TcMar? 68 342 -102 8 1141 217 284 111 56 chr11 72898008 72898116 -48945740 + L2b LINE L2 3189 3302 -73 8 1141 199 317 19 112 chr11 72898246 72898406 -48945450 + L2c LINE L2 3243 3387 0 8 1141 256 278 168 70 chr11 72898803 72898946 -48944910 - B3 SINE B2 -58 158 2 8 1141 1181 75 0 0 chr11 72899804 72899950 -48943906 + B1_Mus1 SINE Alu 3 148 0 8 1141 188 310 73 73 chr11 72900140 72900276 -48943580 + MIR3 SINE MIR 13 148 -60 8 1141 596 303 39 0 chr11 72900411 72900566 -48943290 + RSINE1 SINE B4 3 163 -2 8 1141 382 287 127 47 chr11 72900707 72900919 -48942937 - MLT1B LTR MaLR -161 229 1 8 1141 236 256 144 0 chr11 72901441 72901531 -48942325 - B1F SINE Alu -29 120 18 8 1141 182 37 37 0 chr11 72902623 72902650 -48941206 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1141 293 271 99 57 chr11 72902887 72903062 -48940794 - MER3 DNA MER1_type -47 162 6 9 1141 352 225 37 12 chr11 72903045 72903126 -48940730 - PB1D10 SINE Alu -7 110 28 9 1141 1168 62 14 0 chr11 72903820 72903966 -48939890 + B1_Mus1 SINE Alu 1 148 0 9 1141 194 0 0 37 chr11 72904980 72905007 -48938849 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1141 1141 80 0 0 chr11 72905007 72905145 -48938711 - B1_Mus2 SINE Alu -8 139 2 9 1141 685 240 75 0 chr11 72905177 72905323 -48938533 + RSINE1 SINE B4 2 158 -7 9 1141 928 137 0 54 chr11 72905827 72905974 -48937882 + B1_Mus1 SINE Alu 1 139 -9 9 1141 270 0 0 0 chr11 72905974 72906004 -48937852 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 9 1141 216 333 0 0 chr11 72908482 72908542 -48935314 - MIRb SINE MIR -190 78 19 9 1141 213 292 0 0 chr11 72908624 72908672 -48935184 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1141 458 234 21 0 chr11 72910400 72910494 -48933362 - B1_Mur3 SINE Alu 0 149 54 9 1141 997 74 30 0 chr11 72910745 72910880 -48932976 + B1_Mus1 SINE Alu 2 140 -8 9 1141 298 182 18 0 chr11 72911066 72911121 -48932735 + B4A SINE B4 1 56 -236 9 1141 681 124 29 0 chr11 72911120 72911225 -48932631 - B1F2 SINE Alu 0 149 42 9 1141 737 277 78 70 chr11 72911219 72911475 -48932381 + B4A SINE B4 35 292 0 9 1141 492 158 0 0 chr11 72911639 72911734 -48932122 + T-rich Low_complexity Low_complexity 1 95 0 9 1141 1019 62 8 0 chr11 72911737 72911867 -48931989 - B1_Mus2 SINE Alu 0 147 17 9 1141 521 180 42 59 chr11 72912153 72912252 -48931604 + PB1D10 SINE Alu 2 105 -12 9 1141 240 35 0 0 chr11 72912252 72912281 -48931575 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 9 1141 521 180 42 59 chr11 72912281 72912299 -48931557 + PB1D10 SINE Alu 106 117 0 9 1141 232 320 153 10 chr11 72912324 72912422 -48931434 + B4A SINE B4 11 122 -170 9 1141 447 152 21 0 chr11 72912581 72912672 -48931184 - B1_Mur3 SINE Alu -47 100 2 9 1141 1233 73 0 0 chr11 72912673 72912838 -48931018 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 9 1141 1211 68 0 0 chr11 72912851 72912998 -48930858 + B1_Mm SINE Alu 1 147 0 9 1141 194 57 57 0 chr11 72912999 72913034 -48930822 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 9 1141 1301 71 59 0 chr11 72913034 72913204 -48930652 - B2_Mm2 SINE B2 -14 181 2 9 1141 237 246 0 0 chr11 72913493 72913562 -48930294 - L1M5 LINE L1 -2130 4016 3948 9 1141 817 254 92 62 chr11 72913571 72914029 -48929827 - RMER2 LTR ERV1 0 567 5 9 1141 364 295 33 117 chr11 72914121 72914489 -48929367 - L1M5 LINE L1 -2471 3675 3339 9 1141 662 169 121 15 chr11 72914504 72914636 -48929220 + B1_Mus2 SINE Alu 2 147 0 9 1141 222 37 0 0 chr11 72914637 72914664 -48929192 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 9 1141 312 302 64 7 chr11 72915093 72915233 -48928623 + B1F1 SINE Alu 2 149 0 9 1141 698 247 21 0 chr11 72915343 72915529 -48928327 - Lx5 LINE L1 0 7050 6861 9 1141 760 221 75 75 chr11 72915631 72915817 -48928039 - B3 SINE B2 -28 188 3 9 1141 328 291 92 0 chr11 72915820 72915961 -48927895 + L1M5 LINE L1 3060 3213 -2933 9 1141 1168 81 0 0 chr11 72916074 72916222 -48927634 + B1_Mus1 SINE Alu 1 148 0 9 1141 1022 70 0 0 chr11 72916465 72916593 -48927263 - B1_Mus1 SINE Alu -12 136 9 9 1141 300 280 145 43 chr11 72916847 72916985 -48926871 - L1M5 LINE L1 -365 5799 5648 9 1141 263 211 58 0 chr11 72918345 72918397 -48925459 - tRNA-Ala-GCA tRNA tRNA -2 73 19 9 1141 201 74 0 0 chr11 72918429 72918456 -48925400 + (TGG)n Simple_repeat Simple_repeat 1 27 0 9 1141 438 20 0 0 chr11 72918457 72918508 -48925348 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1141 247 290 29 0 chr11 72918509 72918578 -48925278 - ID4_ SINE ID -11 72 2 9 1141 192 250 146 83 chr11 72918715 72918811 -48925045 - L2a LINE L2 -2 3424 3323 9 1141 785 149 6 18 chr11 72919055 72919219 -48924637 + T-rich Low_complexity Low_complexity 3 164 0 9 1141 327 225 12 12 chr11 72919219 72919300 -48924556 + CT-rich Low_complexity Low_complexity 1 81 0 9 1141 214 205 0 0 chr11 72919308 72919347 -48924509 - ID4_ SINE ID -17 66 28 9 1141 257 178 44 0 chr11 72919358 72919403 -48924453 - B1_Mus1 SINE Alu -93 55 9 9 1141 200 143 29 0 chr11 72919421 72919456 -48924400 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 9 1141 210 250 0 0 chr11 72919596 72919640 -48924216 - MIRm SINE MIR 0 276 233 9 1141 704 148 43 0 chr11 72919680 72919795 -48924061 + B1_Mur1 SINE Alu 14 133 -16 9 1141 243 0 0 0 chr11 72919952 72919979 -48923877 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1141 779 236 0 20 chr11 72920247 72920398 -48923458 + B1_Mur1 SINE Alu 2 149 0 9 1141 582 119 19 29 chr11 72920557 72920661 -48923195 + B1_Mur4 SINE Alu 48 150 0 9 1141 1247 35 7 0 chr11 72920686 72920831 -48923025 + B1_Mm SINE Alu 1 146 -1 9 1141 250 26 51 0 chr11 72920831 72920870 -48922986 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 9 1141 1277 107 10 8 chr11 72920959 72921145 -48922711 - B2_Mm2 SINE B2 -26 190 1 9 1141 231 36 0 0 chr11 72921156 72921184 -48922672 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 1141 1339 85 22 6 chr11 72921184 72921362 -48922494 - B2_Mm2 SINE B2 -14 181 1 9 1141 182 327 109 59 chr11 72922697 72923070 -48920786 - L2b LINE L2 -6 3420 3027 9 1141 956 99 0 0 chr11 72923148 72923279 -48920577 + B1_Mus1 SINE Alu 6 136 -12 9 1141 231 267 0 62 chr11 72924323 72924387 -48919469 - MIRb SINE MIR -5 263 204 9 1141 248 318 0 0 chr11 72924412 72924478 -48919378 - B4A SINE B4 0 292 227 9 1141 803 219 0 99 chr11 72925875 72926057 -48917799 - RSINE1 SINE B4 -1 164 1 9 1141 767 134 0 0 chr11 72926154 72926266 -48917590 + B1_Mur3 SINE Alu 9 120 -29 9 1141 239 301 31 123 chr11 72926631 72926794 -48917062 - MLT1H2 LTR MaLR -48 501 282 9 1141 313 306 41 0 chr11 72926821 72926919 -48916937 - MLT1H2 LTR MaLR -350 139 38 9 1141 197 262 137 71 chr11 72927385 72927483 -48916373 + MIR SINE MIR 38 138 -130 9 1141 464 143 0 12 chr11 72927483 72927568 -48916288 + CT-rich Low_complexity Low_complexity 3 86 0 9 1141 1069 78 0 7 chr11 72927584 72927726 -48916130 - B1_Mus1 SINE Alu 0 148 8 9 1141 551 216 39 103 chr11 72927587 72927742 -48916114 - B4 SINE B4 -69 223 79 9 1141 256 316 21 0 chr11 72927745 72927840 -48916016 + MIR SINE MIR 136 232 -30 9 1141 517 238 39 65 chr11 72927849 72928002 -48915854 + B1_Mur3 SINE Alu 1 149 0 9 1141 187 79 26 26 chr11 72928019 72928058 -48915798 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1141 22 56 0 0 chr11 72928096 72928132 -48915724 + AT_rich Low_complexity Low_complexity 1 36 0 9 1141 361 53 18 18 chr11 72928911 72928968 -48914888 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 9 1141 282 226 121 33 chr11 72929346 72929472 -48914384 - MIR SINE MIR -121 155 23 9 1141 1245 28 14 0 chr11 72929881 72930024 -48913832 + B1_Mur4 SINE Alu 1 145 -5 9 1141 504 0 0 0 chr11 72930025 72930081 -48913775 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 9 1141 450 29 44 0 chr11 72930236 72930304 -48913552 + (CA)n Simple_repeat Simple_repeat 1 71 0 9 1141 1194 64 0 0 chr11 72931165 72931306 -48912550 + B1_Mus1 SINE Alu 2 142 -6 9 1141 277 306 99 46 chr11 72932354 72932505 -48911351 - MIR SINE MIR -65 203 44 9 1141 874 80 1 7 chr11 72932533 72932668 -48911188 - B2_Mm1t SINE B2 -85 131 1 9 1141 522 0 0 0 chr11 72933478 72933536 -48910320 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1141 285 362 154 0 chr11 72934002 72934190 -48909666 + MIR SINE MIR 2 218 -50 9 1141 357 207 89 33 chr11 72934406 72934496 -48909360 + PB1D10 SINE Alu 2 96 -21 9 1141 390 237 118 47 chr11 72934645 72934948 -48908908 + L2a LINE L2 2829 3154 -272 9 1141 468 0 0 0 chr11 72935522 72935574 -48908282 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1141 308 133 0 0 chr11 72935574 72935619 -48908237 + RMER10B LTR ERVL 354 398 0 9 1141 2173 149 23 94 chr11 72935619 72935944 -48907912 - MTD LTR MaLR -79 340 49 9 1141 1235 54 0 0 chr11 72935944 72936082 -48907774 + B1_Mus2 SINE Alu 1 138 -9 9 1141 423 0 0 0 chr11 72936082 72936129 -48907727 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1141 2173 138 18 95 chr11 72936137 72936210 -48907646 - MTD LTR MaLR -371 48 1 9 1141 583 198 34 17 chr11 72936346 72936464 -48907392 + B1_Mur2 SINE Alu 10 129 -20 9 1141 1166 62 14 0 chr11 72937220 72937364 -48906492 + B1_Mus1 SINE Alu 3 148 0 9 1141 2472 72 3 0 chr11 72937407 72937714 -48906142 + L1_Mus1 LINE L1 6260 6567 0 9 1141 559 270 35 55 chr11 72937927 72938127 -48905729 + B3A SINE B2 2 197 -1 9 1141 593 288 62 0 chr11 72938210 72938356 -48905500 - RSINE1 SINE B4 -8 157 3 9 1141 1134 95 0 0 chr11 72939424 72939571 -48904285 - B1_Mus1 SINE Alu 0 148 2 9 1141 1507 33 61 0 chr11 72939919 72940100 -48903756 + B2_Mm1a SINE B2 2 193 0 9 1141 284 298 138 53 chr11 72940570 72940758 -48903098 - MIRc SINE MIR -49 219 16 9 1141 381 270 213 23 chr11 72940811 72941027 -48902829 - L2a LINE L2 -19 3407 3151 9 1141 1110 181 33 9 chr11 72941256 72941468 -48902388 - URR1B DNA MER1_type 0 225 9 9 1141 1711 86 45 0 chr11 72941659 72941903 -48901953 - Lx LINE L1 -172 6482 6228 9 1141 279 297 0 0 chr11 72942008 72942029 -48901827 + B4A SINE B4 68 88 -204 9 1141 347 211 187 4 chr11 72942029 72942152 -48901704 + B1F SINE Alu 4 137 -12 9 1141 274 213 16 16 chr11 72942152 72942214 -48901642 + MIRb SINE MIR 135 196 -72 9 1141 1292 101 10 46 chr11 72942393 72942590 -48901266 + B2_Mm2 SINE B2 2 191 -4 1 1141 565 296 33 6 chr11 72943141 72943321 -48900535 + LTR65 LTR ERV1 166 350 -319 1 1141 493 247 75 19 chr11 72943392 72943553 -48900303 + LTR65 LTR ERV1 468 637 -32 1 1141 977 189 23 28 chr11 72943996 72944213 -48899643 + B3 SINE B2 1 216 0 1 1141 1152 61 0 0 chr11 72944236 72944383 -48899473 - B1_Mus2 SINE Alu 0 147 1 1 1141 1158 145 224 7 chr11 72944836 72945113 -48898743 - ORR1C2 LTR MaLR 0 384 48 1 1141 1225 34 0 0 chr11 72945599 72945746 -48898110 - B1_Mm SINE Alu 0 147 1 1 1141 768 135 40 0 chr11 72945749 72945875 -48897981 - B1_Mus2 SINE Alu -16 131 1 1 1141 351 292 42 0 chr11 72945988 72946084 -48897772 + MER20 DNA MER1_type 119 218 -1 1 1141 650 255 106 55 chr11 72946845 72947119 -48896737 + B4A SINE B4 1 288 -4 1 1141 625 259 132 109 chr11 72947755 72948231 -48895625 - RLTR12B LTR ERVK -7 521 35 1 1141 219 204 148 0 chr11 72948268 72948322 -48895534 + ID4_ SINE ID 2 63 -20 1 1141 185 0 40 0 chr11 72948329 72948354 -48895502 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1 1141 421 342 163 9 chr11 72948364 72948597 -48895259 + B4A SINE B4 2 270 -22 1 1141 946 116 14 7 chr11 72948669 72948816 -48895040 + B1_Mur4 SINE Alu 1 148 -2 1 1141 21 0 0 0 chr11 72949279 72949300 -48894556 + AT_rich Low_complexity Low_complexity 1 21 0 1 1141 332 356 128 14 chr11 72952381 72952734 -48891122 + L2 LINE L2 2375 2767 -652 1 1141 1126 48 0 20 chr11 72952767 72952916 -48890940 + B1_Mm SINE Alu 2 147 0 1 1141 665 285 18 18 chr11 72952932 72953100 -48890756 + B3A SINE B2 2 169 -29 1 1141 1104 120 0 17 chr11 72953098 72953276 -48890580 - B2_Mm2 SINE B2 -18 177 3 1 1141 1184 48 0 0 chr11 72953366 72953513 -48890343 + B1_Mm SINE Alu 1 147 0 1 1141 182 250 20 20 chr11 72954360 72954409 -48889447 + MIR SINE MIR 116 164 -98 1 1141 1080 82 0 7 chr11 72954454 72954602 -48889254 + B1_Mus1 SINE Alu 1 147 -1 1 1141 240 59 0 0 chr11 72954608 72954642 -48889214 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1141 548 217 10 296 chr11 72954886 72954983 -48888873 - B3 SINE B2 0 216 122 1 1141 839 205 74 0 chr11 72954983 72955173 -48888683 + B3 SINE B2 1 204 -12 1 1141 252 0 0 0 chr11 72955173 72955201 -48888655 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 1141 548 217 10 296 chr11 72955201 72955403 -48888453 - B3 SINE B2 -95 121 3 1 1141 1046 140 6 0 chr11 72955407 72955586 -48888270 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 1 1141 279 0 0 0 chr11 72955595 72955626 -48888230 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1 1141 716 139 83 49 chr11 72955631 72955775 -48888081 - B1_Mur2 SINE Alu 0 149 1 1 1141 1162 61 0 0 chr11 72955994 72956142 -48887714 - B1_Mus1 SINE Alu 0 148 1 1 1141 221 0 0 33 chr11 72956177 72956207 -48887649 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1141 1019 80 0 0 chr11 72956207 72956344 -48887512 - B1_Mus2 SINE Alu -9 138 2 1 1141 831 140 15 0 chr11 72956388 72956524 -48887332 + B1_Mur3 SINE Alu 6 143 -6 1 1141 297 0 0 0 chr11 72956525 72956558 -48887298 + (CAAT)n Simple_repeat Simple_repeat 3 35 0 1 1141 298 232 382 0 chr11 72957156 72957312 -48886544 + B3 SINE B2 1 216 0 1 1141 1170 54 0 0 chr11 72958262 72958410 -48885446 + B1_Mus1 SINE Alu 1 148 0 1 1141 1200 73 6 11 chr11 72959259 72959438 -48884418 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 1 1141 612 40 0 0 chr11 72959442 72959517 -48884339 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1141 1015 58 15 0 chr11 72959526 72959663 -48884193 - B1_Mm SINE Alu 0 147 9 1 1141 276 175 79 0 chr11 72959715 72959778 -48884078 - RLTR11A2 LTR ERVK -459 68 1 1 1141 216 0 0 0 chr11 72959923 72959947 -48883909 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1141 291 21 62 0 chr11 72960400 72960448 -48883408 + (TGGGGG)n Simple_repeat Simple_repeat 3 53 0 1 1141 783 188 0 32 chr11 72960949 72961103 -48882753 - B1_Mur2 SINE Alu 0 149 1 1 1141 378 179 0 0 chr11 72961151 72961246 -48882610 + (TG)n Simple_repeat Simple_repeat 1 95 0 1 1141 411 162 13 13 chr11 72961248 72961323 -48882533 - B1_Mus2 SINE Alu -70 77 3 1 1141 313 202 17 111 chr11 72961323 72961365 -48882491 - MT2B LTR ERVL -367 234 129 1 1141 198 103 0 0 chr11 72961365 72961394 -48882462 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1141 315 111 0 18 chr11 72961560 72961615 -48882241 - B1_Mus2 SINE Alu -93 54 1 1 1141 519 95 0 0 chr11 72962605 72962679 -48881177 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1141 225 0 0 0 chr11 72962679 72962703 -48881153 + (CG)n Simple_repeat Simple_repeat 1 25 0 1 1141 234 228 53 0 chr11 72962719 72962776 -48881080 - ID_B1 SINE B4 -8 216 157 1 1141 290 214 18 0 chr11 72963130 72963186 -48880670 - ID_B1 SINE B4 -63 161 105 1 1141 673 191 7 33 chr11 72963248 72963400 -48880456 + B1_Mus1 SINE Alu 1 148 0 1 1141 756 192 150 0 chr11 72963409 72963596 -48880260 - B3 SINE B2 0 216 2 1 1141 266 276 279 26 chr11 72963616 72963842 -48880014 - Charlie4a DNA MER1_type -155 353 92 1 1141 478 232 34 34 chr11 72963948 72964095 -48879761 - B1F1 SINE Alu -1 148 2 1 1141 189 231 0 0 chr11 72964140 72964179 -48879677 - MIR SINE MIR -161 101 63 1 1141 596 218 48 34 chr11 72964199 72964346 -48879510 + B1_Mur1 SINE Alu 1 149 0 1 1141 1302 76 33 0 chr11 72964996 72965180 -48878676 + B2_Mm1a SINE B2 1 190 -3 1 1141 317 43 21 0 chr11 72965506 72965553 -48878303 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 1141 551 189 63 0 chr11 72965553 72965680 -48878176 - B1_Mur2 SINE Alu -13 136 2 1 1141 487 289 170 118 chr11 72965860 72966068 -48877788 - RLTR18B LTR ERVK -5 507 286 1 1141 847 102 80 0 chr11 72966068 72966205 -48877651 - B1_Mur4 SINE Alu 0 150 3 1 1141 487 291 130 110 chr11 72966205 72966336 -48877520 - RLTR18B LTR ERVK -227 285 177 1 1141 600 285 47 87 chr11 72966342 72966642 -48877214 - RLTR18 LTR ERVK -306 310 23 1 1141 305 333 21 10 chr11 72966655 72966752 -48877104 + RSINE1 SINE B4 52 149 -16 1 1141 324 0 0 0 chr11 72966752 72966788 -48877068 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1141 381 43 0 0 chr11 72966788 72966834 -48877022 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1141 979 142 11 0 chr11 72967433 72967609 -48876247 + CT-rich Low_complexity Low_complexity 2 179 0 1 1141 589 110 10 10 chr11 72967620 72967721 -48876135 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 1 1141 1058 198 19 5 chr11 72967742 72967950 -48875906 - B3 SINE B2 -5 211 1 1 1141 195 42 0 0 chr11 72968468 72968492 -48875364 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1141 521 200 344 0 chr11 72968596 72968756 -48875100 - B3 SINE B2 0 216 2 1 1141 735 44 0 0 chr11 72969736 72969827 -48874029 + (GGA)n Simple_repeat Simple_repeat 2 92 0 1 1141 264 295 68 59 chr11 72970011 72970188 -48873668 - MER112 DNA MER1_type -11 250 70 1 1141 496 305 13 7 chr11 72970188 72970343 -48873513 - RSINE1 SINE B4 -7 158 3 1 1141 264 295 68 59 chr11 72970343 72970385 -48873471 - MER112 DNA MER1_type -192 69 29 1 1141 405 260 31 0 chr11 72970988 72971084 -48872772 + PB1D10 SINE Alu 4 102 -15 1 1141 559 253 40 34 chr11 72971319 72971495 -48872361 - B4A SINE B4 -8 284 108 1 1141 1304 90 16 0 chr11 72971581 72971770 -48872086 - B2_Mm2 SINE B2 -2 193 2 1 1141 903 143 7 0 chr11 72972500 72972647 -48871209 + B1_Mus1 SINE Alu 1 148 0 1 1141 201 128 0 49 chr11 72972847 72972888 -48870968 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1141 578 186 17 0 chr11 72974950 72975068 -48868788 - B1_Mus2 SINE Alu -7 140 21 1 1141 227 267 79 34 chr11 72975007 72975096 -48868760 - RLTR25B LTR ERVK -544 484 392 1 1141 200 226 19 0 chr11 72975115 72975168 -48868688 + L2 LINE L2 3007 3060 -359 1 1141 291 176 0 0 chr11 72975455 72975506 -48868350 + B1_Mus2 SINE Alu 1 51 -96 1 1141 1207 41 0 0 chr11 72975510 72975657 -48868199 + B1_Mus1 SINE Alu 1 147 -1 1 1141 210 24 95 0 chr11 72975658 72975700 -48868156 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1141 409 204 19 58 chr11 72975703 72975807 -48868049 + B1_Mur3 SINE Alu 43 142 -7 1 1141 1266 109 10 10 chr11 72976233 72976427 -48867429 - B2_Mm2 SINE B2 0 195 2 1 1141 501 186 212 25 chr11 72976428 72976588 -48867268 - B2_Mm2 SINE B2 -2 193 4 1 1141 318 237 152 88 chr11 72976588 72976710 -48867146 + B3A SINE B2 33 162 -36 1 1141 351 121 0 0 chr11 72976712 72976770 -48867086 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1141 1137 88 12 12 chr11 72976811 72976971 -48866885 + B2_Mm2 SINE B2 3 164 -31 1 1141 342 0 0 0 chr11 72976971 72977009 -48866847 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1141 1137 88 12 12 chr11 72977009 72977021 -48866835 + B2_Mm2 SINE B2 165 175 -20 1 1141 682 149 13 124 chr11 72977070 72977223 -48866633 - B1_Mus2 SINE Alu 0 147 12 1 1141 777 229 20 45 chr11 72977224 72977425 -48866431 - B3A SINE B2 -1 197 2 1 1141 306 292 254 0 chr11 72977457 72977587 -48866269 - RSINE1 SINE B4 -2 163 1 1 1141 212 262 112 0 chr11 72977617 72977697 -48866159 - BC1_Mm scRNA scRNA -45 107 19 1 1141 291 93 0 0 chr11 72977703 72977746 -48866110 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1141 189 0 0 0 chr11 72977746 72977766 -48866090 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1141 682 195 0 0 chr11 72977785 72977908 -48865948 - B1_Mur2 SINE Alu -21 128 6 1 1141 838 200 86 15 chr11 72977945 72978143 -48865713 - B3 SINE B2 -4 212 1 1 1141 480 135 9 37 chr11 72979298 72979406 -48864450 + GA-rich Low_complexity Low_complexity 5 109 0 1 1141 355 310 26 26 chr11 72979406 72979522 -48864334 - RSINE1 SINE B4 -46 119 4 1 1141 450 246 79 14 chr11 72981962 72982102 -48861754 - MER20 DNA MER1_type -17 202 54 1 1141 475 173 216 9 chr11 72982416 72982527 -48861329 + B1_Mus1 SINE Alu 5 138 -10 1 1141 780 42 0 0 chr11 72982527 72982623 -48861233 + (CAAAC)n Simple_repeat Simple_repeat 2 97 0 1 1141 225 83 0 0 chr11 72983186 72983222 -48860634 + (CTTG)n Simple_repeat Simple_repeat 2 37 0 1 1141 1269 58 11 23 chr11 72983230 72983406 -48860450 - B2_Mm1t SINE B2 -19 174 1 1 1141 180 364 15 15 chr11 72983624 72983691 -48860165 + MIRm SINE MIR 202 268 -8 1 1141 264 305 99 23 chr11 72986239 72986370 -48857486 + MER5A1 DNA MER1_type 8 148 -18 1 1141 573 143 105 18 chr11 72986442 72986556 -48857300 - B1_Mur2 SINE Alu -3 146 23 1 1141 21 0 0 0 chr11 72986598 72986619 -48857237 + AT_rich Low_complexity Low_complexity 1 21 0 1 1141 626 221 15 0 chr11 72986682 72986813 -48857043 + B1_Mur1 SINE Alu 1 133 -16 1 1141 221 139 70 0 chr11 72987327 72987370 -48856486 - PB1D10 SINE Alu -14 103 58 1 1141 686 145 17 0 chr11 72987763 72987880 -48855976 - PB1D9 SINE Alu 0 120 2 1 1141 425 254 134 0 chr11 72987998 72988132 -48855724 - RSINE1 SINE B4 -12 153 2 1 1141 465 243 172 20 chr11 72988167 72988318 -48855538 + B3A SINE B2 10 183 -15 1 1141 244 345 73 60 chr11 72988807 72988958 -48854898 + L2c LINE L2 3065 3217 -170 1 1141 286 343 183 6 chr11 72989339 72989517 -48854339 + MIRb SINE MIR 46 247 -15 1 1141 198 0 0 0 chr11 72991267 72991289 -48852567 + (CCG)n Simple_repeat Simple_repeat 1 22 0 1 1141 425 286 0 0 chr11 72991667 72991758 -48852098 - PB1D7 SINE Alu -13 107 17 1 1141 764 98 16 0 chr11 72992502 72992625 -48851231 - URR1B DNA MER1_type -7 218 94 1 1141 1173 41 0 13 chr11 72992626 72992775 -48851081 + B1_Mus1 SINE Alu 2 148 0 1 1141 462 196 20 10 chr11 72992812 72992910 -48850946 - URR1B DNA MER1_type -120 105 7 1 1141 251 296 14 0 chr11 72996003 72996074 -48847782 + ID4_ SINE ID 3 74 -9 1 1141 219 288 0 0 chr11 72996133 72996160 -48847696 + T-rich Low_complexity Low_complexity 35 61 0 1 1141 1555 31 0 20 chr11 72996160 72996356 -48847500 - B2_Mm1a SINE B2 -1 192 1 1 1141 219 288 0 0 chr11 72996356 72996387 -48847469 + T-rich Low_complexity Low_complexity 4 34 0 1 1141 299 164 16 0 chr11 72996388 72996449 -48847407 + CT-rich Low_complexity Low_complexity 2 63 0 1 1141 292 194 56 56 chr11 72996474 72996545 -48847311 - ID4_ SINE ID -9 74 4 1 1141 311 269 170 11 chr11 72996551 72996645 -48847211 - PB1D10 SINE Alu -7 110 2 1 1141 180 0 0 0 chr11 72999151 72999171 -48844685 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1141 399 220 0 90 chr11 72999174 72999274 -48844582 - PB1D10 SINE Alu -21 96 6 1 1141 336 277 98 0 chr11 73002572 73002684 -48841172 + MIR SINE MIR 116 238 -24 1 1141 1018 102 144 6 chr11 73003100 73003267 -48840589 - B2_Mm2 SINE B2 -5 190 1 2 1141 436 259 0 31 chr11 73003302 73003419 -48840437 - PB1D7 SINE Alu -6 114 1 3 1141 370 244 142 12 chr11 73003868 73004030 -48839826 - L1ME3A LINE L1 -24 6149 5967 4 1141 1982 155 89 7 chr11 73004300 73004703 -48839153 + RMER6A LTR ERVK 321 756 0 5 1141 255 322 68 11 chr11 73004703 73004786 -48839070 - ID_B1 SINE B4 -120 104 17 6 1141 310 303 103 0 chr11 73005411 73005576 -48838280 - L1ME3A LINE L1 -130 6043 5862 7 1142 238 319 153 80 chr11 73007578 73007827 -48836029 - RMER15 LTR ERVL -143 432 166 8 1142 335 289 94 34 chr11 73007934 73008065 -48835791 - PB1 SINE Alu -56 255 1 9 1142 363 232 42 0 chr11 73008122 73008217 -48835639 - PB1 SINE Alu -18 109 11 1 1142 246 236 36 0 chr11 73008169 73008224 -48835632 - B4A SINE B4 -147 145 89 1 1142 204 346 25 0 chr11 73008349 73008430 -48835426 - MIRb SINE MIR -179 89 7 1 1142 1195 57 0 0 chr11 73008457 73008598 -48835258 + B1_Mus1 SINE Alu 2 142 -6 1 1142 276 53 0 0 chr11 73008601 73008639 -48835217 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1142 279 0 0 0 chr11 73010520 73010551 -48833305 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1 1142 252 0 0 0 chr11 73010568 73010596 -48833260 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1142 978 132 47 23 chr11 73010604 73010775 -48833081 + B2_Mm2 SINE B2 3 177 -18 1 1142 198 0 0 0 chr11 73010992 73011014 -48832842 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1142 2299 136 148 43 chr11 73011153 73011620 -48832236 + RMER20A LTR ERVK 1 516 0 1 1142 296 308 154 19 chr11 73011631 73011793 -48832063 + MIR SINE MIR 6 189 -73 2 1142 266 342 77 6 chr11 73011803 73011959 -48831897 + MER106A DNA MER1_type 26 192 -44 2 1142 500 283 17 81 chr11 73013832 73014005 -48829851 + RSINE1 SINE B4 2 163 -2 2 1142 603 220 0 17 chr11 73014041 73014217 -48829639 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 1142 189 0 0 0 chr11 73014216 73014237 -48829619 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1142 331 234 150 38 chr11 73014237 73014370 -48829486 + HAL1-3A_ME LINE L1 1975 2122 -736 2 1142 192 281 23 68 chr11 73014983 73015071 -48828785 + MIR3 SINE MIR 111 194 -14 2 1142 477 186 9 76 chr11 73015365 73015470 -48828386 - MER33 DNA MER1_type -3 321 224 2 1142 279 0 0 0 chr11 73015480 73015511 -48828345 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2 1142 455 172 226 0 chr11 73015511 73015604 -48828252 - B1_Mur1 SINE Alu -12 137 24 2 1142 413 233 109 64 chr11 73015597 73015742 -48828114 - MER33 DNA MER1_type -87 237 82 2 1142 1014 232 59 56 chr11 73015742 73016030 -48827826 - B4 SINE B4 -2 290 2 3 1142 413 233 109 64 chr11 73016030 73016104 -48827752 - MER33 DNA MER1_type -243 81 8 2 1142 327 226 22 67 chr11 73016537 73016627 -48827229 + PB1 SINE Alu 32 117 -10 3 1142 300 302 135 101 chr11 73016773 73017080 -48826776 + LTR48 LTR ERV1 320 773 -14 3 1142 39 0 0 0 chr11 73017914 73017953 -48825903 + AT_rich Low_complexity Low_complexity 1 39 0 3 1142 468 48 0 0 chr11 73017962 73018025 -48825831 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1142 315 0 0 0 chr11 73018025 73018059 -48825797 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1142 244 284 102 0 chr11 73018072 73018160 -48825696 - RSINE1 SINE B4 -68 97 1 3 1142 186 43 0 0 chr11 73018169 73018192 -48825664 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1142 417 293 0 0 chr11 73018192 73018291 -48825565 - ID_B1 SINE B4 -3 221 123 3 1142 375 234 39 90 chr11 73018391 73018464 -48825392 - B1F SINE Alu -2 147 77 3 1142 207 0 0 0 chr11 73018464 73018487 -48825369 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1142 375 234 39 90 chr11 73018487 73018568 -48825288 - B1F SINE Alu -73 76 1 3 1142 374 85 17 0 chr11 73018635 73018694 -48825162 + (TTA)n Simple_repeat Simple_repeat 2 61 0 4 1142 245 186 0 0 chr11 73018695 73018738 -48825118 - tRNA-Ala-GCY_ tRNA tRNA -7 68 26 4 1142 382 355 19 25 chr11 73018843 73019005 -48824851 - MIRb SINE MIR -22 246 86 4 1142 24 0 0 0 chr11 73019264 73019288 -48824568 + AT_rich Low_complexity Low_complexity 1 24 0 4 1142 379 312 56 74 chr11 73020390 73020732 -48823124 + L1M5 LINE L1 5384 5732 -439 4 1142 702 238 13 20 chr11 73021273 73021423 -48822433 + B3 SINE B2 61 209 -7 4 1142 1199 133 16 21 chr11 73021865 73022057 -48821799 - B2_Mm2 SINE B2 -4 191 1 4 1142 362 235 0 12 chr11 73023055 73023141 -48820715 + PB1D10 SINE Alu 25 109 -8 4 1142 2576 157 10 0 chr11 73023162 73023569 -48820287 - MTC LTR MaLR -10 411 1 4 1142 959 154 0 39 chr11 73023638 73023793 -48820063 + B1_Mur4 SINE Alu 2 150 0 5 1142 784 255 18 12 chr11 73023906 73024069 -48819787 + RSINE1 SINE B4 2 165 0 5 1142 403 328 53 34 chr11 73024069 73024114 -48819742 + B3 SINE B2 1 212 -4 5 1142 275 182 56 0 chr11 73024150 73024276 -48819580 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 5 1142 537 109 59 24 chr11 73024310 73024479 -48819377 + (TCTA)n Simple_repeat Simple_repeat 2 176 0 5 1142 470 331 110 38 chr11 73024492 73024809 -48819047 + HAL1 LINE L1 1198 1537 -970 5 1142 739 322 61 52 chr11 73024822 73025166 -48818690 - MLT1H1 LTR MaLR -12 543 197 5 1142 220 305 84 67 chr11 73025189 73025268 -48818588 - B3A SINE B2 -15 183 2 5 1142 491 220 20 0 chr11 73025268 73025368 -48818488 - RSINE1 SINE B4 -61 104 3 5 1142 722 299 65 26 chr11 73025368 73025587 -48818269 - B4A SINE B4 -62 230 3 5 1142 408 344 26 0 chr11 73025591 73025742 -48818114 - MLT1H1 LTR MaLR -393 176 22 5 1142 231 377 0 0 chr11 73026001 73026078 -48817778 + ID4 SINE ID 1 77 -6 5 1142 806 168 15 22 chr11 73026283 73026417 -48817439 + B1_Mur4 SINE Alu 18 150 0 6 1142 189 0 0 0 chr11 73026522 73026543 -48817313 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 6 1142 196 273 14 43 chr11 73026645 73026714 -48817142 - MIRb SINE MIR -142 126 60 6 1142 267 262 16 0 chr11 73028884 73028945 -48814911 + ID4 SINE ID 14 75 -8 6 1142 601 286 116 7 chr11 73029095 73029380 -48814476 + L1MB8 LINE L1 5536 5851 -327 6 1142 640 332 172 9 chr11 73029605 73030036 -48813820 - MER21B LTR ERV1 -50 813 313 6 1142 404 148 0 0 chr11 73030038 73030099 -48813757 - B3 SINE B2 -155 61 1 6 1142 762 69 0 0 chr11 73030103 73030204 -48813652 + (TTTC)n Simple_repeat Simple_repeat 1 101 0 6 1142 825 167 0 0 chr11 73030205 73030355 -48813501 + CT-rich Low_complexity Low_complexity 2 151 0 6 1142 297 252 68 93 chr11 73030356 73030380 -48813476 - PB1D10 SINE Alu 0 117 3 6 1142 298 241 21 117 chr11 73030380 73030474 -48813382 - 4.5SRNA scRNA scRNA -8 86 2 7 1142 325 323 112 8 chr11 73031063 73031197 -48812659 - MLT1F1 LTR MaLR -412 157 10 7 1142 319 306 7 71 chr11 73032601 73032756 -48811100 - RMER4A LTR ERVK -296 170 26 7 1142 235 254 18 0 chr11 73033044 73033099 -48810757 - ID4_ SINE ID -2 81 26 7 1142 1036 178 11 16 chr11 73033292 73033475 -48810381 - B3 SINE B2 0 216 35 7 1142 449 226 118 82 chr11 73033881 73034016 -48809840 + B1_Mur1 SINE Alu 1 140 -9 7 1142 244 164 49 0 chr11 73034029 73034090 -48809766 + GA-rich Low_complexity Low_complexity 4 67 0 7 1142 275 297 0 0 chr11 73034096 73034170 -48809686 + ID4_ SINE ID 1 74 -9 7 1142 238 302 0 0 chr11 73034350 73034403 -48809453 - ID4 SINE ID -29 54 2 7 1142 780 252 201 25 chr11 73034431 73034675 -48809181 + B4A SINE B4 2 288 -4 7 1142 191 312 73 31 chr11 73034766 73034862 -48808994 - MER5B DNA MER1_type -54 124 25 7 1142 254 303 0 0 chr11 73034908 73034974 -48808882 + MER5A1 DNA MER1_type 49 114 -52 8 1142 732 23 0 0 chr11 73035234 73035320 -48808536 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1142 1196 44 0 0 chr11 73035320 73035457 -48808399 - B1_Mus1 SINE Alu -11 137 1 8 1142 258 279 50 12 chr11 73035464 73035544 -48808312 - ID4 SINE ID 0 83 1 8 1142 470 214 33 11 chr11 73035618 73035708 -48808148 - PB1D7 SINE Alu -5 115 24 8 1142 217 259 0 36 chr11 73036955 73037011 -48806845 + GA-rich Low_complexity Low_complexity 1 54 0 8 1142 576 193 126 0 chr11 73038093 73038212 -48805644 + B1_Mur2 SINE Alu 8 141 -8 8 1142 458 192 112 67 chr11 73038212 73038227 -48805629 + B4 SINE B4 93 232 -60 8 1142 415 281 0 0 chr11 73038442 73038524 -48805332 + RSINE1 SINE B4 3 84 -81 8 1142 180 111 0 0 chr11 73038590 73038617 -48805239 + (ATG)n Simple_repeat Simple_repeat 2 28 0 8 1142 289 347 161 29 chr11 73038987 73039230 -48804626 + MLT1I LTR MaLR 106 380 -31 9 1142 354 360 78 30 chr11 73039970 73040182 -48803674 - MIR SINE MIR 0 262 43 9 1142 23 0 0 0 chr11 73040218 73040241 -48803615 + AT_rich Low_complexity Low_complexity 1 23 0 9 1142 192 125 0 0 chr11 73040430 73040462 -48803394 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1142 1780 222 101 11 chr11 73040463 73040927 -48802929 - Lx7 LINE L1 -385 7311 6806 9 1142 443 321 88 28 chr11 73043067 73043200 -48800656 - RCHARR1 DNA MER1_type -1 973 838 9 1142 669 180 0 0 chr11 73043200 73043311 -48800545 + PB1D9 SINE Alu 2 112 -8 9 1142 443 321 88 28 chr11 73043311 73043346 -48800510 - RCHARR1 DNA MER1_type -137 837 799 9 1142 1206 81 0 0 chr11 73043346 73043494 -48800362 + B1_Mus1 SINE Alu 1 148 0 9 1142 1655 233 71 60 chr11 73043494 73043997 -48799859 - RCHARR1 DNA MER1_type -176 798 7 9 1142 599 269 0 39 chr11 73044084 73044239 -48799617 + B1F SINE Alu 1 149 0 9 1142 486 276 8 17 chr11 73044892 73045010 -48798846 + B4A SINE B4 2 118 -174 9 1142 308 326 48 42 chr11 73045010 73045101 -48798755 + B3A SINE B2 2 200 -16 1 1142 532 241 64 6 chr11 73045958 73046129 -48797727 + L1MB3 LINE L1 6003 6183 0 1 1142 221 318 79 89 chr11 73046159 73046373 -48797483 + MIRc SINE MIR 14 225 -43 1 1142 187 325 42 42 chr11 73046267 73046386 -48797470 + L2 LINE L2 475 593 -2826 1 1142 2692 122 4 40 chr11 73046513 73046964 -48796892 - RMER10A LTR ERVL -7 435 1 1 1142 269 205 47 93 chr11 73047184 73047270 -48796586 + MER105 DNA DNA 122 203 -1 1 1142 292 319 29 0 chr11 73049231 73049350 -48794506 + MIRb SINE MIR 18 147 -121 1 1142 301 299 39 0 chr11 73049485 73049562 -48794294 - ID4_ SINE ID -2 81 2 1 1142 1138 263 183 9 chr11 73050215 73050652 -48793204 - Lx8 LINE L1 -2 7471 6959 1 1142 237 282 26 0 chr11 73053345 73053423 -48790433 + CT-rich Low_complexity Low_complexity 3 82 0 1 1142 401 0 20 0 chr11 73054373 73054422 -48789434 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1142 535 262 90 0 chr11 73054689 73054811 -48789045 - B1F SINE Alu -16 133 1 1 1142 344 284 8 121 chr11 73054708 73054832 -48789024 - B4A SINE B4 -118 174 65 1 1142 462 200 59 10 chr11 73055799 73055900 -48787956 - PB1D10 SINE Alu -7 110 5 1 1142 1148 185 24 5 chr11 73057223 73057435 -48786421 - URR1B DNA MER1_type -5 220 5 1 1142 340 263 0 25 chr11 73058500 73058601 -48785255 + ID4 SINE ID 9 101 -51 1 1142 477 0 0 0 chr11 73058619 73058672 -48785184 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1142 426 39 0 0 chr11 73059135 73059187 -48784669 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1142 293 289 37 110 chr11 73059191 73059327 -48784529 - RSINE1 SINE B4 -38 127 2 1 1142 188 275 110 76 chr11 73059327 73059445 -48784411 + L2c LINE L2 3266 3387 0 1 1142 290 344 101 44 chr11 73059784 73059942 -48783914 - B4A SINE B4 -121 171 5 1 1142 1341 95 21 0 chr11 73060148 73060337 -48783519 - B2_Mm2 SINE B2 -1 194 2 1 1142 257 100 0 20 chr11 73060341 73060392 -48783464 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 1 1142 337 327 35 0 chr11 73060394 73060507 -48783349 - PB1D10 SINE Alu 0 117 1 1 1142 351 0 0 0 chr11 73060555 73060594 -48783262 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1142 756 231 55 0 chr11 73060597 73060779 -48783077 - ORR1D1 LTR MaLR -10 360 169 1 1142 491 125 19 19 chr11 73060779 73060885 -48782971 + GA-rich Low_complexity Low_complexity 1 106 0 1 1142 1022 141 21 48 chr11 73060885 73061071 -48782785 - ORR1D1 LTR MaLR -193 181 1 1 1142 474 319 63 29 chr11 73062097 73062271 -48781585 - MER20 DNA MER1_type -5 214 35 1 1142 1376 87 11 5 chr11 73062811 73062996 -48780860 - B2_Mm2 SINE B2 -8 187 2 1 1142 504 330 144 54 chr11 73063223 73063531 -48780325 - HAL1 LINE L1 -295 2212 1882 1 1142 450 241 0 57 chr11 73063531 73063654 -48780202 - PB1D7 SINE Alu 0 120 5 1 1142 504 330 144 54 chr11 73063654 73063825 -48780031 - HAL1 LINE L1 -626 1881 1690 1 1142 262 299 65 9 chr11 73063875 73063983 -48779873 + Tigger5 DNA MER2_type 2293 2406 0 1 1142 1294 79 40 0 chr11 73065116 73065293 -48778563 - B2_Mm1t SINE B2 -8 185 2 1 1142 305 247 138 11 chr11 73065314 73065408 -48778448 - L1MC4 LINE L1 -3 8039 7934 1 1142 297 284 21 10 chr11 73065416 73065512 -48778344 + CT-rich Low_complexity Low_complexity 2 98 0 1 1142 308 254 60 0 chr11 73065519 73065586 -48778270 - ID4 SINE ID -10 73 3 1 1142 244 269 99 16 chr11 73065740 73065861 -48777995 - L1MC4 LINE L1 -1010 7032 6902 1 1142 240 350 56 21 chr11 73066234 73066377 -48777479 + MER91B DNA Tip100 1 148 -42 1 1142 714 259 0 18 chr11 73068556 73068721 -48775135 - RCHARR1 DNA MER1_type -810 164 3 1 1142 257 283 47 113 chr11 73068758 73068963 -48774893 - L1MEf LINE L1 -5148 1052 864 1 1142 1258 106 33 6 chr11 73068963 73069143 -48774713 - B2_Mm2 SINE B2 -9 186 2 1 1142 257 283 47 113 chr11 73069143 73069212 -48774644 - L1MEf LINE L1 -5337 863 796 1 1142 2363 47 0 29 chr11 73069212 73069520 -48774336 - L1Md_F3 LINE L1 0 6584 6304 1 1142 1347 84 17 6 chr11 73069520 73069699 -48774157 - B2_Mm2 SINE B2 -13 182 2 1 1142 2363 47 0 29 chr11 73069699 73069719 -48774137 - L1Md_F3 LINE L1 -281 6303 6284 1 1142 293 355 6 77 chr11 73069824 73070007 -48773849 - L1MEf LINE L1 -5447 753 584 1 1142 303 181 147 40 chr11 73070584 73070659 -48773197 + ID4 SINE ID 1 83 0 1 1142 1848 223 91 48 chr11 73070885 73071389 -48772467 - RLTR18 LTR ERVK -77 539 14 1 1142 235 330 154 10 chr11 73071684 73071788 -48772068 - RMER10B LTR ERVL -11 387 269 1 1142 984 150 7 13 chr11 73072572 73072721 -48771135 - B1_Mur2 SINE Alu -1 148 1 1 1142 1335 240 127 68 chr11 73072743 73073193 -48770663 - Lx9 LINE L1 -8 7636 7132 1 1142 2375 127 63 26 chr11 73073193 73073573 -48770283 - ORR1B1 LTR MaLR 0 394 1 1 1142 1335 240 127 68 chr11 73073573 73073774 -48770082 - Lx9 LINE L1 -513 7131 6946 1 1142 524 264 120 33 chr11 73074814 73074825 -48769031 - MTD LTR MaLR -16 391 381 1 1142 699 12 0 0 chr11 73074825 73074905 -48768951 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1142 198 0 0 0 chr11 73074905 73074926 -48768930 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1142 641 205 134 16 chr11 73074926 73075097 -48768759 - MTD LTR MaLR -29 390 193 1 1142 37 0 0 0 chr11 73075205 73075242 -48768614 + AT_rich Low_complexity Low_complexity 1 37 0 1 1142 1605 127 21 60 chr11 73075251 73075536 -48768320 - Lx3B LINE L1 0 6973 6700 1 1142 882 156 44 7 chr11 73075536 73075672 -48768184 - B1_Mur2 SINE Alu -8 141 1 1 1142 736 237 0 0 chr11 73075913 73076052 -48767804 - RSINE1 SINE B4 -24 141 3 1 1142 349 327 0 28 chr11 73076193 73076300 -48767556 - MTD LTR MaLR -236 123 20 1 1142 469 283 150 0 chr11 73076491 73076664 -48767192 - MIRb SINE MIR -52 216 18 1 1142 180 0 0 0 chr11 73077922 73077942 -48765914 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1142 4233 36 10 12 chr11 73077968 73078480 -48765376 - L1Md_F2 LINE L1 -1 6581 6071 1 1142 269 209 60 0 chr11 73080493 73080560 -48763296 - MIRc SINE MIR -125 143 73 1 1142 188 243 63 63 chr11 73083010 73083089 -48760767 + L3 LINE CR1 4308 4386 -103 1 1142 538 241 64 21 chr11 73083941 73084081 -48759775 - ID_B1 SINE B4 0 224 79 1 1142 240 268 68 61 chr11 73083950 73084097 -48759759 + YREP_Mm Unknown Unknown 186 333 -1479 1 1142 193 300 20 20 chr11 73084345 73084396 -48759460 - L2 LINE L2 -2853 566 516 1 1142 300 91 0 0 chr11 73085189 73085233 -48758623 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1142 188 0 0 69 chr11 73085270 73085299 -48758557 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1142 267 152 0 0 chr11 73086764 73086810 -48757046 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 1 1142 1790 241 16 5 chr11 73086949 73087328 -48756528 - Lx5 LINE L1 -3 7047 6665 1 1142 223 306 163 0 chr11 73087541 73087639 -48756217 + L2b LINE L2 3249 3362 -13 1 1142 246 128 0 0 chr11 73088128 73088167 -48755689 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 1 1142 263 221 276 0 chr11 73088203 73088286 -48755570 - B1F SINE Alu -14 103 2 1 1142 2753 94 20 2 chr11 73089240 73089634 -48754222 - L1_Mus3 LINE L1 0 6638 6238 1 1142 1065 136 101 26 chr11 73089689 73089878 -48753978 - B3 SINE B2 -9 207 5 1 1142 383 221 52 22 chr11 73089969 73090103 -48753753 - L1MA4 LINE L1 -393 5907 5770 1 1142 485 228 62 16 chr11 73090096 73090225 -48753631 - RMER1C Other Other 0 1342 1208 1 1142 657 283 38 30 chr11 73090253 73090567 -48753289 - L1_Mur3 LINE L1 -107 5773 5486 1 1142 436 286 9 26 chr11 73090569 73090596 -48753260 - PB1D10 SINE Alu -2 115 91 1 1142 297 0 0 0 chr11 73090596 73090629 -48753227 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1142 436 286 9 26 chr11 73090629 73090716 -48753140 - PB1D10 SINE Alu -27 90 3 1 1142 306 175 18 0 chr11 73091706 73091763 -48752093 - HAL1b LINE L1 -8 2001 1944 1 1142 233 29 0 29 chr11 73092005 73092040 -48751816 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1142 1194 44 0 0 chr11 73092040 73092177 -48751679 - B1_Mm SINE Alu -10 137 1 1 1142 271 263 26 13 chr11 73093847 73093924 -48749932 + ID4 SINE ID 2 79 -4 1 1142 353 297 107 9 chr11 73094646 73094758 -48749098 - B1F SINE Alu -9 140 18 1 1142 423 0 0 0 chr11 73095543 73095590 -48748266 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1142 333 0 0 0 chr11 73095801 73095838 -48748018 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1142 342 194 0 0 chr11 73095838 73095910 -48747946 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1142 659 231 212 12 chr11 73096168 73096409 -48747447 - B4A SINE B4 -1 291 3 1 1142 373 274 184 9 chr11 73096603 73096820 -48747036 - L2a LINE L2 -230 3196 2942 1 1142 217 259 19 0 chr11 73098849 73098903 -48744953 - MER5B DNA MER1_type -123 55 1 1 1142 2047 181 13 21 chr11 73100393 73100771 -48743085 + Lx LINE L1 6278 6652 -2 1 1142 183 299 60 0 chr11 73101073 73101140 -48742716 - MIRc SINE MIR -119 149 79 1 1142 202 280 20 0 chr11 73101315 73101388 -48742468 + MIR SINE MIR 91 171 -105 1 1142 186 167 0 0 chr11 73102153 73102189 -48741667 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 1 1142 567 0 0 0 chr11 73103484 73103547 -48740309 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1142 1163 250 10 87 chr11 73103572 73103883 -48739973 - B4A SINE B4 -5 287 1 1 1142 335 140 105 0 chr11 73104450 73104507 -48739349 - B1_Mur1 SINE Alu -1 148 86 1 1142 580 268 191 0 chr11 73104508 73104743 -48739113 - Lx8 LINE L1 -212 7261 6982 1 1142 249 139 0 0 chr11 73105537 73105580 -48738276 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1142 253 300 66 11 chr11 73105745 73105836 -48738020 - MER63D DNA AcHobo -479 582 487 1 1142 633 255 232 48 chr11 73105986 73106334 -48737522 - Lx8 LINE L1 -151 7322 6911 1 1142 754 284 20 126 chr11 73106335 73106706 -48737150 - MER63D DNA AcHobo -556 505 160 1 1142 307 321 0 9 chr11 73106706 73106816 -48737040 - PB1D10 SINE Alu -8 109 1 1 1142 754 284 20 126 chr11 73106816 73106896 -48736960 - MER63D DNA AcHobo -902 159 103 1 1142 228 35 0 0 chr11 73108586 73108615 -48735241 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 2 1142 204 275 0 14 chr11 73108826 73108896 -48734960 + CT-rich Low_complexity Low_complexity 2 70 0 2 1142 181 152 0 29 chr11 73110410 73110444 -48733412 + L3b LINE CR1 443 475 -7 2 1142 187 250 0 0 chr11 73110414 73110450 -48733406 + MIR3 SINE MIR 168 203 -5 2 1142 279 0 0 0 chr11 73111478 73111509 -48732347 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1142 928 150 146 26 chr11 73114120 73114312 -48729544 + B3 SINE B2 2 216 0 2 1142 1345 81 16 0 chr11 73114572 73114757 -48729099 - B2_Mm2 SINE B2 -7 188 1 2 1142 2496 33 0 13 chr11 73115737 73116043 -48727813 + L1Md_F2 LINE L1 6280 6581 -1 2 1142 724 229 0 41 chr11 73116239 73116385 -48727471 - RSINE1 SINE B4 -1 164 25 2 1142 1236 192 0 0 chr11 73116427 73116625 -48727231 - B3 SINE B2 -18 198 1 2 1142 236 77 0 25 chr11 73117435 73117475 -48726381 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1142 677 273 76 79 chr11 73117575 73117865 -48725991 - B4A SINE B4 0 292 4 2 1142 209 242 15 61 chr11 73119372 73119438 -48724418 + MER5A DNA MER1_type 2 64 -125 2 1142 1046 141 28 17 chr11 73119449 73119603 -48724253 + B2_Mm2 SINE B2 1 159 -36 2 1142 258 32 0 0 chr11 73119603 73119634 -48724222 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2 1142 1046 141 28 17 chr11 73119634 73119659 -48724197 + B2_Mm2 SINE B2 160 182 -13 2 1142 204 40 0 0 chr11 73119967 73119992 -48723864 + (CCA)n Simple_repeat Simple_repeat 2 26 0 2 1142 411 235 59 29 chr11 73120062 73120198 -48723658 - B1F1 SINE Alu -9 140 1 2 1142 305 278 58 29 chr11 73120682 73120819 -48723037 + Lx6 LINE L1 7317 7457 -3 2 1142 327 375 27 0 chr11 73121227 73121339 -48722517 - PB1D7 SINE Alu -5 115 1 2 1142 328 242 246 46 chr11 73121370 73121500 -48722356 + B4 SINE B4 67 222 -70 2 1142 542 200 18 18 chr11 73121394 73121506 -48722350 + PB1D10 SINE Alu 6 117 0 2 1142 243 320 56 32 chr11 73121782 73121908 -48721948 + MTEb LTR MaLR 8 136 -223 2 1142 268 301 107 41 chr11 73121937 73122088 -48721768 + MTEb LTR MaLR 241 405 -14 2 1142 392 315 36 115 chr11 73123027 73123411 -48720445 - MLT1H LTR MaLR -6 543 190 2 1142 2311 133 30 0 chr11 73123550 73123917 -48719939 + ORR1C1 LTR MaLR 1 378 0 2 1142 300 154 0 0 chr11 73123969 73124021 -48719835 + CT-rich Low_complexity Low_complexity 1 52 0 2 1142 1085 124 11 0 chr11 73124021 73124199 -48719657 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1142 959 117 0 0 chr11 73124199 73124327 -48719529 - B1_Mus2 SINE Alu -18 129 2 2 1142 22 0 0 0 chr11 73124667 73124689 -48719167 + AT_rich Low_complexity Low_complexity 1 22 0 2 1142 411 21 0 0 chr11 73124933 73124981 -48718875 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1142 283 280 117 11 chr11 73125015 73125109 -48718747 - PB1D10 SINE Alu -13 104 1 2 1142 858 288 19 9 chr11 73125186 73125461 -48718395 - B4A SINE B4 0 292 11 2 1142 21 0 0 0 chr11 73125487 73125508 -48718348 + AT_rich Low_complexity Low_complexity 1 21 0 2 1142 318 312 109 30 chr11 73125519 73125684 -48718172 - L1M5 LINE L1 -401 5778 5601 2 1142 548 242 56 8 chr11 73125699 73125824 -48718032 + B4A SINE B4 15 145 -147 2 1142 26 50 0 0 chr11 73125999 73126039 -48717817 + AT_rich Low_complexity Low_complexity 1 40 0 2 1142 231 241 60 12 chr11 73126174 73126258 -48717598 - L1M5 LINE L1 -803 5437 5350 2 1142 466 328 76 18 chr11 73126305 73126581 -48717275 - Lx8 LINE L1 -16 7457 7166 2 1142 225 331 136 15 chr11 73126698 73126830 -48717026 + B4 SINE B4 58 205 -87 2 1142 434 219 52 2 chr11 73126732 73126838 -48717018 + B1F1 SINE Alu 12 128 -21 2 1142 1612 92 130 76 chr11 73128203 73128533 -48715323 + Lx2B LINE L1 6630 6977 -23 2 1142 894 88 0 0 chr11 73128627 73128752 -48715104 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 2 1142 1640 154 36 7 chr11 73128753 73129034 -48714822 + MTC LTR MaLR 133 421 0 2 1142 603 196 0 0 chr11 73129068 73129175 -48714681 - B1F2 SINE Alu 0 149 43 2 1142 647 143 17 0 chr11 73129185 73129304 -48714552 + CT-rich Low_complexity Low_complexity 2 122 0 2 1142 1076 90 11 22 chr11 73129315 73129497 -48714359 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1142 296 264 225 0 chr11 73129514 73129643 -48714213 - Lx4B LINE L1 -17 7041 6884 2 1142 269 279 0 85 chr11 73129643 73129737 -48714119 - B1F2 SINE Alu -61 88 3 2 1142 245 290 116 0 chr11 73129676 73129745 -48714111 - ID_B1 SINE B4 -80 144 68 2 1142 243 311 13 13 chr11 73131326 73131401 -48712455 - ID4 SINE ID -6 77 3 2 1142 186 133 0 0 chr11 73131441 73131471 -48712385 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 2 1142 225 231 0 0 chr11 73131501 73131540 -48712316 - ID4_ SINE ID -40 43 5 2 1142 23 0 0 0 chr11 73131620 73131643 -48712213 + AT_rich Low_complexity Low_complexity 1 23 0 2 1142 6806 104 11 9 chr11 73131711 73132692 -48711164 + RLTR13C1 LTR ERVK 1 983 0 2 1142 191 287 167 65 chr11 73132824 73132932 -48710924 + L2b LINE L2 3155 3273 -102 2 1142 3998 64 36 20 chr11 73133743 73134300 -48709556 - Lx3_Mus LINE L1 -8 7001 6436 2 1142 310 200 0 32 chr11 73134423 73134485 -48709371 - B1F1 SINE Alu 0 149 90 2 1142 3841 48 13 2 chr11 73134569 73135046 -48708810 + RLTR45 LTR ERVK 1 482 0 2 1142 455 134 0 0 chr11 73135902 73135969 -48707887 + B1_Mus1 SINE Alu 1 67 -81 2 1142 281 210 77 77 chr11 73135931 73136112 -48707744 - RMER17A LTR ERVK -252 499 319 2 1142 210 216 137 0 chr11 73136108 73136159 -48707697 + B1_Mus2 SINE Alu 89 146 -1 2 1142 298 257 87 110 chr11 73136585 73136712 -48707144 - B1F SINE Alu -5 144 21 2 1142 21 0 0 0 chr11 73136760 73136781 -48707075 + AT_rich Low_complexity Low_complexity 1 21 0 2 1142 572 50 25 0 chr11 73137017 73137097 -48706759 + B1_Mus2 SINE Alu 66 147 0 2 1143 269 286 196 0 chr11 73138554 73138666 -48705190 + RSINE1 SINE B4 3 136 -29 2 1143 34 0 0 22 chr11 73138715 73138740 -48705116 + AT_rich Low_complexity Low_complexity 1 25 0 2 1143 1165 82 0 0 chr11 73138740 73138887 -48704969 - B1_Mm SINE Alu 0 147 1 2 1143 34 0 0 22 chr11 73138887 73138906 -48704950 + AT_rich Low_complexity Low_complexity 1 19 0 2 1143 423 0 0 0 chr11 73139334 73139381 -48704475 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1143 437 243 140 0 chr11 73140584 73140691 -48703165 - B1F SINE Alu -2 147 26 2 1143 841 231 235 34 chr11 73140838 73141187 -48702669 - MTD LTR MaLR 0 419 1 2 1143 206 143 0 28 chr11 73141456 73141492 -48702364 + T-rich Low_complexity Low_complexity 5 39 0 2 1143 315 0 0 0 chr11 73141521 73141556 -48702300 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1143 1210 54 0 0 chr11 73141556 73141703 -48702153 - B1_Mus1 SINE Alu 0 148 2 2 1143 375 302 61 25 chr11 73142353 73142516 -48701340 - L4 LINE RTE -1506 523 355 2 1143 204 308 27 65 chr11 73143554 73143738 -48700118 + C-rich Low_complexity Low_complexity 3 179 0 2 1143 313 343 39 10 chr11 73143832 73143935 -48699921 + PB1D10 SINE Alu 1 106 -11 2 1143 29 28 0 0 chr11 73144189 73144225 -48699631 + AT_rich Low_complexity Low_complexity 1 36 0 2 1143 638 155 9 0 chr11 73145036 73145152 -48698704 - Lx2 LINE L1 -8 6989 6873 2 1143 905 166 7 0 chr11 73145161 73145306 -48698550 - B1_Mur4 SINE Alu 0 150 5 2 1143 322 350 116 7 chr11 73145494 73145632 -48698224 - MIR SINE MIR -107 155 3 2 1143 944 169 113 56 chr11 73146001 73146214 -48697642 + URR1A DNA MER1_type 2 226 0 2 1143 691 258 260 7 chr11 73147412 73147712 -48696144 + MLT1A1 LTR MaLR 31 406 -2 2 1143 366 229 57 0 chr11 73147982 73148052 -48695804 - RSINE1 SINE B4 -83 82 9 2 1143 23 0 0 0 chr11 73148197 73148220 -48695636 + AT_rich Low_complexity Low_complexity 1 23 0 2 1143 22 35 0 0 chr11 73148334 73148363 -48695493 + AT_rich Low_complexity Low_complexity 1 29 0 2 1143 504 117 0 0 chr11 73148414 73148491 -48695365 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 2 1143 632 238 47 7 chr11 73148492 73148640 -48695216 - RSINE1 SINE B4 0 165 12 2 1143 605 280 87 49 chr11 73148871 73149055 -48694801 + B3A SINE B2 8 198 0 2 1143 374 226 266 3 chr11 73149887 73150077 -48693779 - MER2 DNA MER2_type -93 252 17 2 1143 2726 174 37 82 chr11 73150227 73150949 -48692907 + RMER6C LTR ERVK 1 690 0 2 1143 8548 8 0 2 chr11 73151137 73152372 -48691484 - L1Md_T LINE L1 0 6582 5350 2 1143 33 56 0 0 chr11 73152377 73152431 -48691425 + AT_rich Low_complexity Low_complexity 1 54 0 2 1143 360 269 0 31 chr11 73152595 73152691 -48691165 - RMER15 LTR ERVL -146 429 337 2 1143 268 336 34 25 chr11 73153490 73153609 -48690247 + MIRc SINE MIR 39 158 -110 2 1143 23 0 0 0 chr11 73154247 73154270 -48689586 + AT_rich Low_complexity Low_complexity 1 23 0 2 1143 683 312 35 61 chr11 73154390 73154619 -48689237 - MER58A DNA MER1_type -1 223 1 2 1143 657 172 81 8 chr11 73155425 73155548 -48688308 - B1_Mur2 SINE Alu 0 149 18 2 1143 602 251 207 0 chr11 73155578 73155757 -48688099 + B3 SINE B2 1 216 0 2 1143 1951 134 3 7 chr11 73155799 73156100 -48687756 - Lx3B LINE L1 -4 6969 6670 2 1143 539 229 134 39 chr11 73156356 73156483 -48687373 - B1_Mur1 SINE Alu -7 142 4 2 1143 545 293 12 37 chr11 73156856 73157019 -48686837 - RSINE1 SINE B4 -6 159 1 2 1143 1073 92 0 0 chr11 73157422 73157564 -48686292 - B1_Mus1 SINE Alu -6 142 1 3 1143 4503 88 10 0 chr11 73158374 73158989 -48684867 - L1_Mus3 LINE L1 -2 6636 6016 3 1143 474 231 116 66 chr11 73159602 73159843 -48684013 - L1MB8 LINE L1 0 6178 5926 3 1143 557 102 0 0 chr11 73159892 73159976 -48683880 - L1_Mus2 LINE L1 -408 6228 6145 3 1143 502 144 0 37 chr11 73159976 73160084 -48683772 + L1Md_F2 LINE L1 6477 6580 -2 3 1143 403 279 81 12 chr11 73160788 73160948 -48682908 - Lx9 LINE L1 -396 7248 7078 3 1143 1059 57 43 0 chr11 73161035 73161176 -48682680 - B1_Mus2 SINE Alu 0 147 1 3 1143 327 179 219 26 chr11 73161394 73161549 -48682307 - Lx8 LINE L1 -1 7472 7288 3 1143 600 142 146 22 chr11 73162251 73162388 -48681468 + URR1A DNA MER1_type 67 220 -6 3 1143 257 327 18 9 chr11 73162497 73162608 -48681248 + ERVL-B4-int LTR ERVL 4892 5003 -711 3 1143 413 31 133 0 chr11 73162674 73162802 -48681054 + CT-rich Low_complexity Low_complexity 1 145 0 3 1143 741 23 0 0 chr11 73162802 73162889 -48680967 + (TTTCC)n Simple_repeat Simple_repeat 2 88 0 3 1143 946 117 6 22 chr11 73162897 73163080 -48680776 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 3 1143 468 51 0 0 chr11 73163082 73163141 -48680715 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 3 1143 514 176 259 0 chr11 73163141 73163249 -48680607 - B1_Mus1 SINE Alu -12 136 1 3 1143 406 235 50 0 chr11 73163266 73163385 -48680471 + L1MC LINE L1 5696 5820 -513 3 1143 396 266 30 61 chr11 73164874 73165006 -48678850 + MER5A1 DNA MER1_type 10 137 -29 3 1143 459 0 0 0 chr11 73166169 73166220 -48677636 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1143 465 208 158 0 chr11 73166974 73167094 -48676762 + B1_Mm SINE Alu 1 139 -8 3 1143 521 318 25 37 chr11 73168449 73168612 -48675244 + RSINE1 SINE B4 3 163 -2 3 1143 1223 61 0 0 chr11 73168892 73169039 -48674817 - B1_Mm SINE Alu 0 147 1 3 1143 258 239 57 41 chr11 73169375 73169497 -48674359 - L1MA6 LINE L1 -9 6291 6168 3 1143 195 42 0 0 chr11 73169502 73169526 -48674330 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1143 441 252 0 20 chr11 73169538 73169639 -48674217 - B4A SINE B4 -8 284 186 3 1143 2101 289 87 39 chr11 73169645 73170797 -48673059 + L1M2 LINE L1 4057 5263 -880 3 1143 336 274 92 53 chr11 73170889 73171020 -48672836 - MER44D DNA MER2_type -569 136 1 3 1143 5210 121 14 9 chr11 73171220 73172027 -48671829 - Lx LINE L1 -6 6648 5838 3 1143 1697 119 0 0 chr11 73172028 73172280 -48671576 - Lx LINE L1 -233 5650 5399 3 1143 6654 101 24 5 chr11 73172304 73174018 -48669838 - L1_Mus1 LINE L1 -1 6566 4814 3 1143 265 271 57 0 chr11 73174203 73174273 -48669583 - ID4_ SINE ID -5 78 5 3 1143 360 256 12 0 chr11 73174281 73174367 -48669489 - PB1D10 SINE Alu -6 111 25 3 1143 316 318 41 77 chr11 73174368 73174562 -48669294 + L1MD LINE L1 4820 5006 -1140 3 1143 11911 47 9 1 chr11 73174626 73176859 -48666997 - L1Md_A LINE L1 -15 6569 4316 3 1143 36182 52 3 1 chr11 73176838 73183020 -48660836 - L1Md_A LINE L1 0 6582 447 3 1143 257 381 28 28 chr11 73183043 73183186 -48660670 - LTR16E2 LTR ERVL -388 180 38 3 1143 4286 26 2 0 chr11 73183393 73183885 -48659971 + MT2_Mm LTR ERVL 1 493 0 3 1143 357 273 0 0 chr11 73185426 73185503 -48658353 - ID4_ SINE ID -3 80 4 3 1143 188 294 185 56 chr11 73186392 73186587 -48657269 - L2c LINE L2 -154 3233 3014 3 1143 336 336 14 0 chr11 73187037 73187177 -48656679 + Lx8 LINE L1 6969 7110 -363 3 1143 213 200 0 35 chr11 73190196 73190253 -48653603 + T-rich Low_complexity Low_complexity 3 57 0 3 1143 229 297 0 0 chr11 73191246 73191320 -48652536 + L1M4 LINE L1 5016 5089 -1057 3 1143 896 207 70 0 chr11 73191519 73191732 -48652124 - Lx3C LINE L1 -11 6965 6738 3 1143 500 144 0 0 chr11 73191736 73191821 -48652035 - L1_Mur2 LINE L1 -575 5608 5522 3 1143 5534 83 4 19 chr11 73191959 73192796 -48651060 - L1_Mur1 LINE L1 -642 5244 4421 3 1143 182 279 72 14 chr11 73192959 73193028 -48650828 - L2 LINE L2 -1884 1535 1463 3 1143 7024 59 5 1 chr11 73193240 73194175 -48649681 - L1_Mus2 LINE L1 -2 6564 5588 3 1143 326 233 0 11 chr11 73194179 73194270 -48649586 - L1VL2 LINE L1 -6150 185 96 3 1143 334 236 45 75 chr11 73194636 73194769 -48649087 + RLTR13D3 LTR ERVK 944 1072 -42 3 1143 10099 73 32 4 chr11 73194806 73196319 -48647537 - L1_Mur1 LINE L1 -1460 4426 2872 3 1143 2259 97 3 12 chr11 73196321 73196664 -48647192 + L1_Mur1 LINE L1 5248 5587 -299 3 1143 4423 213 64 22 chr11 73197452 73198819 -48645037 + Lx2 LINE L1 5550 6996 -1 3 1143 481 325 56 9 chr11 73199063 73199404 -48644452 + L1MA5 LINE L1 5939 6295 -5 3 1143 1680 247 67 5 chr11 73199526 73200079 -48643777 + L1_Mur3 LINE L1 4406 4992 -888 3 1143 1050 280 35 9 chr11 73200240 73200582 -48643274 + Lx7 LINE L1 6961 7311 -385 3 1143 371 206 7 56 chr11 73200582 73200726 -48643130 + T-rich Low_complexity Low_complexity 6 142 0 3 1143 21 0 0 0 chr11 73200845 73200866 -48642990 + AT_rich Low_complexity Low_complexity 1 21 0 3 1143 821 257 48 0 chr11 73200959 73201165 -48642691 + B3 SINE B2 1 216 0 3 1143 450 0 0 0 chr11 73202873 73202923 -48640933 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1143 315 0 0 0 chr11 73204432 73204467 -48639389 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1143 761 289 0 29 chr11 73206204 73206302 -48637554 + RMER1B Other Other 1 95 -971 3 1143 1075 56 0 32 chr11 73206302 73206488 -48637368 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1143 761 289 0 29 chr11 73206488 73206599 -48637257 + RMER1B Other Other 96 204 -862 3 1143 2298 157 45 24 chr11 73206710 73207179 -48636677 + RLTR22_Mur LTR ERVK 1 479 -1369 3 1143 3500 170 16 3 chr11 73207263 73207871 -48635985 - Lx3B LINE L1 -1 6972 6357 3 1143 1027 201 34 50 chr11 73208002 73208264 -48635592 + RLTR22_Mur LTR ERVK 1591 1848 0 3 1143 1213 55 0 0 chr11 73210846 73210991 -48632865 + B1_Mus2 SINE Alu 3 147 0 3 1143 369 362 84 13 chr11 73211149 73211387 -48632469 + MLT2D LTR ERVL 59 313 -101 3 1143 303 233 67 27 chr11 73211506 73211581 -48632275 + ID4 SINE ID 2 79 -4 3 1143 274 284 18 9 chr11 73211584 73211694 -48632162 + GA-rich Low_complexity Low_complexity 2 112 0 3 1143 23 33 0 0 chr11 73213503 73213533 -48630323 + AT_rich Low_complexity Low_complexity 1 30 0 3 1143 1119 76 5 26 chr11 73213777 73213966 -48629890 + L1VL4 LINE L1 776 960 -5342 3 1143 1580 272 43 11 chr11 73213971 73214439 -48629417 + Lx6 LINE L1 6977 7459 -1 3 1143 20711 67 4 3 chr11 73214447 73217546 -48626310 + L1Md_F2 LINE L1 3041 6142 -440 3 1143 547 246 49 0 chr11 73217934 73218056 -48625800 - ETnERV2-int LTR ERVK -204 7202 7075 3 1143 3218 82 0 30 chr11 73218056 73218524 -48625332 + L1Md_F2 LINE L1 6128 6581 -1 3 1143 990 130 0 0 chr11 73218590 73218736 -48625120 - B1_Mus2 SINE Alu 0 147 2 3 1143 327 328 116 43 chr11 73221662 73221939 -48621917 + MLT2D LTR ERVL 1 297 -117 3 1143 459 0 0 0 chr11 73221963 73222014 -48621842 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1143 232 342 27 0 chr11 73222284 73222357 -48621499 - B1F2 SINE Alu -72 77 3 3 1143 391 285 89 12 chr11 73224309 73224624 -48619232 - L1_Mur3 LINE L1 -760 5540 5169 3 1143 23 33 0 0 chr11 73224646 73224676 -48619180 + AT_rich Low_complexity Low_complexity 1 30 0 3 1143 2586 147 47 29 chr11 73224677 73225126 -48618730 - Lx4A LINE L1 -10 7048 6592 3 1143 962 0 18 0 chr11 73225370 73225483 -48618373 + (TTTTC)n Simple_repeat Simple_repeat 2 116 0 3 1143 369 62 0 0 chr11 73225484 73225532 -48618324 + (TCCCC)n Simple_repeat Simple_repeat 5 52 0 3 1143 1012 106 0 0 chr11 73225544 73225686 -48618170 - B1_Mus1 SINE Alu 0 148 7 3 1143 1307 127 88 8 chr11 73225993 73226232 -48617624 + L1VL1 LINE L1 1 258 -6164 3 1143 1251 158 58 0 chr11 73226220 73226460 -48617396 + L1_Mus4 LINE L1 477 730 -5889 3 1143 26302 137 5 9 chr11 73226450 73228453 -48615403 + L1_Mus4 LINE L1 886 2979 -2907 3 1143 3828 149 113 92 chr11 73228453 73229337 -48614519 + RMER17A2 LTR ERVK 1 903 -3 3 1143 26302 135 9 9 chr11 73229337 73232999 -48610857 + L1_Mus4 LINE L1 2980 6637 -2 3 1143 1442 301 58 34 chr11 73233085 73233764 -48610092 + Lx9 LINE L1 6624 7428 -216 3 1143 270 0 0 0 chr11 73233764 73233794 -48610062 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1143 1094 342 62 28 chr11 73233794 73233899 -48609957 + Lx9 LINE L1 7328 7435 -38 3 1143 23 0 0 0 chr11 73233899 73233922 -48609934 + AT_rich Low_complexity Low_complexity 1 23 0 3 1143 240 203 34 0 chr11 73233934 73233993 -48609863 + Lx8 LINE L1 5841 5901 -1572 3 1143 631 237 35 64 chr11 73234004 73234207 -48609649 - B3A SINE B2 0 198 2 3 1143 1004 0 9 0 chr11 73234225 73234341 -48609515 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 3 1143 467 302 43 35 chr11 73234341 73234715 -48609141 + L1M2 LINE L1 5016 5392 -751 3 1143 1287 219 7 22 chr11 73234681 73234993 -48608863 - Lx7 LINE L1 -1579 5894 5590 3 1143 3706 202 33 50 chr11 73235007 73236361 -48607495 - RMER1B Other Other 0 1066 2 3 1143 495 244 23 70 chr11 73236772 73236944 -48606912 + RNLTR23 LTR ERVK 479 642 0 3 1143 792 21 0 0 chr11 73237074 73237168 -48606688 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 3 1143 588 339 103 18 chr11 73237198 73237586 -48606270 - Lx9 LINE L1 -172 7472 7052 3 1143 21 0 0 0 chr11 73239814 73239835 -48604021 + AT_rich Low_complexity Low_complexity 1 21 0 3 1143 369 345 100 42 chr11 73240155 73240499 -48603357 + MLT2C1 LTR ERVL 33 394 -3 3 1143 225 315 0 0 chr11 73240558 73240612 -48603244 + ID4_ SINE ID 1 54 -29 3 1143 557 289 45 70 chr11 73240936 73241137 -48602719 + B3A SINE B2 3 198 0 3 1143 231 330 10 129 chr11 73241152 73241253 -48602603 + B4A SINE B4 82 170 -122 4 1143 219 235 0 0 chr11 73241316 73241414 -48602442 + GA-rich Low_complexity Low_complexity 2 99 0 4 1143 376 221 66 5 chr11 73241449 73241559 -48602297 + B1F1 SINE Alu 7 119 -1 4 1143 360 0 0 0 chr11 73242319 73242359 -48601497 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 1143 501 149 85 0 chr11 73242446 73242540 -48601316 - PB1D9 SINE Alu 0 120 19 4 1143 185 0 40 0 chr11 73242540 73242565 -48601291 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 4 1143 6944 88 9 4 chr11 73242570 73244013 -48599843 - L1Md_F2 LINE L1 -12 6570 5115 4 1143 2251 174 101 4 chr11 73244032 73244586 -48599270 - L1_Mur3 LINE L1 -1645 4235 3628 4 1143 3362 239 62 55 chr11 73244581 73246478 -48597378 + Lx5 LINE L1 5155 7460 0 4 1143 3077 181 8 40 chr11 73247862 73248483 -48595373 - Lx4B LINE L1 -5 7053 6453 4 1143 1986 78 88 41 chr11 73248483 73248802 -48595054 - RLTR10B2 LTR ERVK -14 351 18 4 1143 281 28 0 0 chr11 73248816 73248852 -48595004 - RLTR10B2 LTR ERVK -256 36 1 4 1143 4366 95 7 1 chr11 73248852 73249852 -48594004 - MMERVK10C-int LTR ERVK 0 7680 6646 4 1143 37916 58 3 2 chr11 73249838 73250657 -48593199 - MMERVK10C-int LTR ERVK -1771 5810 4986 4 1143 3546 20 0 0 chr11 73250657 73251053 -48592803 + MTA_Mm LTR MaLR 1 396 0 4 1143 9450 17 3 5 chr11 73251053 73252151 -48591705 + MTA_Mm-int LTR MaLR 1 1096 -2 4 1143 3546 20 0 0 chr11 73252153 73252549 -48591307 + MTA_Mm LTR MaLR 1 396 0 4 1143 37916 58 3 2 chr11 73252549 73256663 -48587193 - MMERVK10C-int LTR ERVK -2596 4985 871 4 1143 1475 93 9 21 chr11 73256667 73256972 -48586884 - MMERVK10C-int LTR ERVK -7188 393 40 4 1143 1940 63 0 121 chr11 73256981 73257304 -48586552 - RLTR10B2 LTR ERVK 0 292 9 4 1143 281 28 0 0 chr11 73257304 73257340 -48586516 - RLTR10B2 LTR ERVK -256 36 1 4 1143 592 141 10 0 chr11 73257340 73257439 -48586417 - Lx4B LINE L1 -585 6473 6374 4 1143 1530 47 5 0 chr11 73257439 73257631 -48586225 - L1Md_T LINE L1 0 6582 6390 4 1143 5265 17 0 0 chr11 73257631 73258462 -48585394 + L1Md_A LINE L1 5259 6089 -493 4 1143 1947 169 47 16 chr11 73258457 73258842 -48585014 - Lx4B LINE L1 -670 6388 5992 4 1143 342 61 0 0 chr11 73259981 73260030 -48583826 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1143 231 370 37 38 chr11 73260298 73260409 -48583447 - B1F2 SINE Alu -10 110 1 4 1143 3948 218 54 58 chr11 73263382 73264289 -48579567 - RMER13B LTR ERVK 0 908 6 4 1143 1911 287 70 7 chr11 73265750 73266361 -48577495 + Lx6 LINE L1 6810 7459 -1 4 1143 1079 97 0 14 chr11 73266422 73266569 -48577287 - B1_Mus2 SINE Alu -1 146 2 4 1144 22 0 0 0 chr11 73269402 73269424 -48574432 + AT_rich Low_complexity Low_complexity 1 22 0 4 1144 22 35 0 0 chr11 73269472 73269501 -48574355 + AT_rich Low_complexity Low_complexity 1 29 0 4 1144 340 325 116 43 chr11 73269501 73269778 -48574078 + MLT2D LTR ERVL 1 297 -117 4 1144 396 0 0 0 chr11 73269802 73269846 -48574010 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1144 379 283 32 7 chr11 73271994 73272306 -48571550 - L1M2 LINE L1 -794 5506 5185 4 1144 2524 148 62 33 chr11 73272335 73272788 -48571068 - Lx4A LINE L1 -1 7057 6592 4 1144 750 139 0 67 chr11 73273039 73273105 -48570751 + T-rich Low_complexity Low_complexity 115 180 0 4 1144 1044 117 0 22 chr11 73273105 73273289 -48570567 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 1144 750 139 0 67 chr11 73273289 73273394 -48570462 + T-rich Low_complexity Low_complexity 21 114 0 4 1144 1181 106 0 6 chr11 73273394 73273575 -48570281 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 1144 750 139 0 67 chr11 73273575 73273595 -48570261 + T-rich Low_complexity Low_complexity 1 20 0 4 1144 1051 116 0 0 chr11 73273609 73273756 -48570100 - B1_Mus1 SINE Alu 0 148 2 4 1144 30 69 0 0 chr11 73274281 73274339 -48569517 + AT_rich Low_complexity Low_complexity 1 58 0 4 1144 7681 164 42 34 chr11 73274397 73275628 -48568228 - Lx4A LINE L1 -532 6526 5242 4 1144 3911 47 0 0 chr11 73275628 73276099 -48567757 - L1Md_F2 LINE L1 -13 6569 6099 4 1144 17510 154 40 16 chr11 73276099 73278122 -48565734 - Lx4A LINE L1 -642 5241 3488 4 1144 204 67 0 0 chr11 73278122 73278152 -48565704 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 1144 309 26 0 0 chr11 73278156 73278194 -48565662 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1144 17510 152 41 13 chr11 73278194 73280449 -48563407 - Lx4A LINE L1 -2390 3487 1146 4 1144 287 248 84 60 chr11 73280450 73280617 -48563239 - Lx4A LINE L1 -6045 1041 871 4 1144 6692 90 32 1 chr11 73281125 73282598 -48561258 - L1_Mus2 LINE L1 0 6566 5047 4 1144 268 289 0 0 chr11 73282596 73282686 -48561170 + L1Md_F LINE L1 610 699 -5820 4 1144 2787 113 13 17 chr11 73282687 73283162 -48560694 - MusHAL1 LINE L1 -765 1947 1475 4 1144 33810 36 0 0 chr11 73283162 73288816 -48555040 + L1Md_T LINE L1 1 5589 -297 4 1144 8928 6 3 0 chr11 73288817 73289809 -48554047 + L1Md_T LINE L1 5591 6585 0 4 1144 2425 197 17 2 chr11 73290368 73290841 -48553015 - Lx5 LINE L1 -277 6773 6294 4 1144 1445 192 30 20 chr11 73290841 73291130 -48552726 + RMER19A LTR ERVK 1 292 -445 4 1144 2919 155 45 8 chr11 73291130 73291617 -48552239 - RLTR11A LTR ERVK 0 528 24 4 1144 1374 251 109 12 chr11 73291625 73292037 -48551819 + RMER19A LTR ERVK 286 737 0 4 1144 657 261 7 7 chr11 73292037 73292191 -48551665 - Lx5 LINE L1 -751 6299 6146 4 1144 689 232 186 34 chr11 73292209 73292472 -48551384 + RMER17B LTR ERVK 551 853 -105 4 1144 963 191 20 5 chr11 73292485 73292685 -48551171 - Lx5 LINE L1 -1065 5985 5783 4 1144 481 146 52 0 chr11 73292706 73292802 -48551054 - Lx3B LINE L1 -7 6974 6874 4 1144 5214 128 60 3 chr11 73293052 73293912 -48549944 - RMER17B LTR ERVK -48 910 2 4 1144 3766 133 3 10 chr11 73293912 73294519 -48549337 - Lx3B LINE L1 -103 6870 6268 4 1144 843 111 7 0 chr11 73294516 73294651 -48549205 - Lx5 LINE L1 -1258 5792 5657 4 1144 1078 182 123 0 chr11 73294649 73294901 -48548955 + L1_Mur1 LINE L1 1697 1979 -3907 4 1144 2894 95 6 2 chr11 73295019 73295485 -48548371 + MusHAL1 LINE L1 1618 2085 -627 4 1144 1125 75 7 0 chr11 73296048 73296195 -48547661 + B1_Mus1 SINE Alu 1 148 0 4 1144 25 75 0 0 chr11 73296207 73296260 -48547596 + AT_rich Low_complexity Low_complexity 1 53 0 4 1144 40 37 0 0 chr11 73296570 73296624 -48547232 + AT_rich Low_complexity Low_complexity 1 54 0 4 1144 1241 270 78 5 chr11 73297353 73297766 -48546090 + Lx6 LINE L1 6645 7087 -373 4 1144 1310 127 4 69 chr11 73297781 73298026 -48545830 + RMER17A2 LTR ERVK 1 229 -677 4 1144 245 121 0 0 chr11 73298019 73298052 -48545804 - RMER17A2 LTR ERVK -873 33 1 4 1144 1268 274 5 8 chr11 73298060 73298431 -48545425 + Lx6 LINE L1 7090 7459 -1 4 1144 4628 105 13 15 chr11 73298585 73299270 -48544586 - Lx LINE L1 0 6654 5971 4 1144 7945 103 39 8 chr11 73301191 73302532 -48541324 - MusHAL1 LINE L1 0 2712 1331 4 1144 671 175 0 0 chr11 73302530 73302633 -48541223 - L1VL4 LINE L1 -6012 290 188 4 1144 22 0 0 0 chr11 73303446 73303468 -48540388 + AT_rich Low_complexity Low_complexity 1 22 0 4 1144 385 322 72 38 chr11 73303552 73303800 -48540056 + MLT2D LTR ERVL 51 307 -107 4 1144 312 48 0 0 chr11 73303853 73303895 -48539961 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1144 1671 21 0 0 chr11 73305401 73305593 -48538263 - B2_Mm1a SINE B2 0 193 2 4 1144 3510 68 4 13 chr11 73306692 73307153 -48536703 - L1_Mus1 LINE L1 -9 6558 6102 4 1144 25657 117 19 3 chr11 73307153 73311924 -48531932 - L1Md_F LINE L1 -453 5430 584 4 1144 3103 14 0 0 chr11 73311948 73312294 -48531562 - ORR1A0 LTR MaLR 0 346 1 4 1144 2265 51 8 30 chr11 73312294 73312716 -48531140 - ORR1A0-int LTR MaLR -1452 340 1 4 1144 2928 12 42 0 chr11 73312716 73313048 -48530808 - ORR1A0 LTR MaLR 0 346 1 4 1144 633 180 30 120 chr11 73313049 73313283 -48530573 - L1Md_F LINE L1 -6049 567 355 4 1144 604 286 69 32 chr11 73313495 73314070 -48529786 - L1_Rod LINE L1 -789 5511 4853 4 1144 547 226 0 22 chr11 73314095 73314276 -48529580 + GA-rich Low_complexity Low_complexity 1 177 0 4 1144 263 290 109 53 chr11 73314380 73314682 -48529174 - L1_Mur3 LINE L1 -1145 4735 4417 4 1144 990 90 0 19 chr11 73314845 73315004 -48528852 + (TTC)n Simple_repeat Simple_repeat 1 156 0 4 1144 266 274 70 25 chr11 73315168 73315325 -48528531 + Lx8 LINE L1 7308 7471 -2 4 1144 28 29 0 0 chr11 73315409 73315444 -48528412 + AT_rich Low_complexity Low_complexity 1 35 0 4 1144 6091 92 79 1 chr11 73317160 73318084 -48525772 - L1_Mus3 LINE L1 -20 6618 5623 4 1144 609 300 77 56 chr11 73318127 73318413 -48525443 + MLT2D LTR ERVL 1 292 -122 4 1144 1407 92 15 0 chr11 73319103 73319298 -48524558 - RMER17D LTR ERVK -691 198 1 4 1144 579 101 11 22 chr11 73319298 73319380 -48524476 + BGLII LTR ERVK 341 421 0 4 1144 470 319 97 23 chr11 73319664 73319921 -48523935 - L1MC LINE L1 -2730 3416 3141 4 1144 1180 215 99 0 chr11 73319978 73320220 -48523636 - Lx5 LINE L1 -143 6907 6642 4 1144 2843 206 25 46 chr11 73320668 73321443 -48522413 - Lx4B LINE L1 -3 6973 6205 4 1144 22 88 0 0 chr11 73321771 73321828 -48522028 + AT_rich Low_complexity Low_complexity 1 57 0 4 1144 325 279 40 16 chr11 73321896 73322020 -48521836 + L1M4 LINE L1 3964 4090 -2056 4 1144 28 0 0 0 chr11 73322035 73322063 -48521793 + AT_rich Low_complexity Low_complexity 1 28 0 4 1144 1418 31 4 96 chr11 73322070 73322215 -48521641 - MusHAL1 LINE L1 -5 2707 2571 4 1144 1111 88 0 0 chr11 73322215 73322363 -48521493 - B1_Mus1 SINE Alu 0 148 1 4 1144 1418 31 4 96 chr11 73322363 73322467 -48521389 - MusHAL1 LINE L1 -142 2570 2481 4 1144 2482 189 31 17 chr11 73322467 73322945 -48520911 + RLTR17 LTR ERVK 208 692 0 4 1144 442 135 0 26 chr11 73322945 73323021 -48520835 + RMER3D-int LTR ERVK 1 74 -2768 4 1144 405 0 0 0 chr11 73323023 73323068 -48520788 + (TTCTC)n Simple_repeat Simple_repeat 3 47 0 4 1144 1410 56 0 0 chr11 73323068 73323248 -48520608 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1144 324 0 0 0 chr11 73323248 73323284 -48520572 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 4 1144 6291 214 46 64 chr11 73323347 73325945 -48517911 + RMER3D-int LTR ERVK 141 2837 -5 4 1144 1564 148 4 39 chr11 73325973 73326254 -48517602 + RLTR17 LTR ERVK 98 368 -324 4 1144 3988 67 0 17 chr11 73326262 73326865 -48516991 - MusHAL1 LINE L1 -218 2494 1902 4 1144 621 239 45 20 chr11 73326864 73327065 -48516791 + Lx6 LINE L1 6004 6209 -1251 4 1144 21 0 0 0 chr11 73327176 73327197 -48516659 + AT_rich Low_complexity Low_complexity 1 21 0 4 1144 1925 264 46 28 chr11 73328266 73329194 -48514662 + Lx6 LINE L1 6222 7458 -2 4 1144 1001 59 96 0 chr11 73329195 73329330 -48514526 + B1_Mus1 SINE Alu 1 148 0 4 1144 270 0 0 0 chr11 73329371 73329401 -48514455 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1144 506 323 89 21 chr11 73331855 73332092 -48511764 + MLT2D LTR ERVL 75 327 -87 4 1144 305 303 11 53 chr11 73332864 73332958 -48510898 - RMER20B LTR ERVK -502 125 36 4 1144 1141 88 0 0 chr11 73332986 73333133 -48510723 - B1_Mus2 SINE Alu 0 147 1 4 1144 31 26 0 0 chr11 73334373 73334411 -48509445 + AT_rich Low_complexity Low_complexity 1 38 0 4 1144 341 276 109 12 chr11 73335226 73335391 -48508465 - L1MB8 LINE L1 -47 6131 5951 4 1144 693 247 153 0 chr11 73335396 73335508 -48508348 - RMER1B Other Other -1 1065 954 4 1144 360 0 0 0 chr11 73335508 73335548 -48508308 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 4 1144 693 247 153 0 chr11 73335548 73335670 -48508186 - RMER1B Other Other -113 953 796 4 1144 908 165 0 0 chr11 73335670 73335834 -48508022 - Lx5 LINE L1 -1176 5874 5711 4 1144 789 167 8 0 chr11 73336228 73336354 -48507502 - ETnERV2-int LTR ERVK -210 7196 7070 4 1144 1949 193 29 15 chr11 73336355 73337014 -48506842 - Lx5 LINE L1 -166 5711 5326 4 1144 186 327 109 39 chr11 73337540 73337696 -48506160 - MIR SINE MIR -83 179 13 5 1144 352 228 0 38 chr11 73338707 73338812 -48505044 - L1_Mur2 LINE L1 -953 4924 4824 5 1144 684 309 14 37 chr11 73339004 73339048 -48504808 - L1M2 LINE L1 -1310 4833 4794 5 1144 1112 193 13 5 chr11 73339048 73339272 -48504584 + URR1A DNA MER1_type 1 226 0 5 1144 684 309 14 37 chr11 73339272 73339657 -48504199 - L1M2 LINE L1 -1350 4793 4414 5 1144 4689 80 15 14 chr11 73339679 73340335 -48503521 - L1Md_F2 LINE L1 -12 6570 5914 5 1144 4784 55 1 0 chr11 73340335 73341006 -48502850 + L1Md_F2 LINE L1 5245 5916 -666 5 1144 6881 111 6 2 chr11 73341068 73342224 -48501632 - L1_Mus3 LINE L1 -3 6635 5475 5 1144 4864 133 21 70 chr11 73342233 73343179 -48500677 - RLTR13D6 LTR ERVK -2 900 1 5 1144 6551 102 12 3 chr11 73343179 73344229 -48499627 - L1_Mm LINE L1 -3260 2623 1564 5 1144 4054 143 31 36 chr11 73344211 73345060 -48498796 + L1Md_F LINE L1 362 1205 -5411 5 1144 23431 36 0 0 chr11 73345066 73348103 -48495753 + L1Md_F LINE L1 1170 4206 -1677 5 1144 5211 103 13 7 chr11 73348101 73348570 -48495286 - L1VL1 LINE L1 -2342 1356 901 5 1144 6987 33 4 2 chr11 73348570 73349415 -48494441 - L1Md_F3 LINE L1 0 6584 5739 5 1144 5211 103 61 33 chr11 73349415 73350074 -48493782 - L1VL1 LINE L1 -5522 900 203 5 1144 22 0 0 0 chr11 73350460 73350482 -48493374 + AT_rich Low_complexity Low_complexity 1 22 0 5 1144 265 252 13 140 chr11 73350484 73350641 -48493215 - L1M2 LINE L1 -1809 4334 4198 5 1144 252 268 26 35 chr11 73350654 73350770 -48493086 + L1M2 LINE L1 4975 5089 -1054 5 1144 1269 112 0 0 chr11 73351477 73351665 -48492191 + L1_Mus2 LINE L1 6378 6565 -1 5 1144 24 53 0 0 chr11 73352006 73352044 -48491812 + AT_rich Low_complexity Low_complexity 1 38 0 5 1144 28 29 0 0 chr11 73352161 73352196 -48491660 + AT_rich Low_complexity Low_complexity 1 35 0 5 1144 1859 273 51 11 chr11 73352681 73353671 -48490185 + Lx6 LINE L1 5842 7452 -8 5 1144 447 297 96 25 chr11 73356643 73356840 -48487016 + MLT2D LTR ERVL 75 285 -129 5 1144 197 163 20 0 chr11 73356899 73356948 -48486908 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1144 312 304 43 0 chr11 73357196 73357288 -48486568 - B1F SINE Alu -53 96 1 5 1144 28156 114 12 13 chr11 73359461 73365234 -48478622 - L1_Mus2 LINE L1 0 6566 823 5 1144 487 114 0 0 chr11 73365233 73365303 -48478553 + L1Md_F LINE L1 655 724 -5795 5 1144 198 0 0 0 chr11 73366071 73366093 -48477763 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 5 1144 28143 72 66 6 chr11 73366579 73371931 -48471925 - L1Md_F2 LINE L1 -496 6086 392 5 1144 2723 201 31 34 chr11 73371931 73372831 -48471025 - L1_Mur1 LINE L1 -5735 1247 1 5 1144 901 144 25 0 chr11 73373950 73374110 -48469746 - RLTR10 LTR ERVK 0 390 227 5 1144 2383 29 10 13 chr11 73374226 73374540 -48469316 - RLTR10 LTR ERVK -77 313 1 5 1144 12334 21 14 1 chr11 73374542 73375162 -48468694 - RLTR10-int LTR ERVK -3 1984 1366 5 1144 203 0 37 0 chr11 73375162 73375189 -48468667 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1144 12334 27 11 2 chr11 73375189 73376420 -48467436 - RLTR10-int LTR ERVK -622 1365 41 5 1144 936 69 8 15 chr11 73376430 73376563 -48467293 - RLTR10 LTR ERVK 0 390 259 5 1144 2383 29 10 13 chr11 73376674 73376988 -48466868 - RLTR10 LTR ERVK -77 313 1 5 1144 1151 268 47 28 chr11 73376988 73377305 -48466551 + MTD LTR MaLR 44 366 -53 5 1144 1161 342 61 29 chr11 73377354 73378336 -48465520 - Lx7 LINE L1 -545 7151 6138 5 1144 3159 26 42 5 chr11 73378492 73378873 -48464983 + MTA_Mm LTR MaLR 2 396 0 5 1144 796 318 88 21 chr11 73379280 73380029 -48463827 + L1_Mur3 LINE L1 3401 4200 -1680 5 1144 470 61 15 0 chr11 73380118 73380184 -48463672 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1144 285 235 23 0 chr11 73380218 73380350 -48463506 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 1144 24133 105 15 92 chr11 73380416 73383207 -48460649 - L1_Mus1 LINE L1 -1 6566 3750 5 1144 2329 89 34 0 chr11 73383207 73383534 -48460322 + ORR1A1 LTR MaLR 1 338 -8 5 1144 12498 68 26 31 chr11 73383538 73385339 -48458517 + ORR1A1-int LTR MaLR 1 1792 0 5 1144 2409 67 34 0 chr11 73385339 73385666 -48458190 + ORR1A1 LTR MaLR 1 338 -8 5 1144 24133 113 15 133 chr11 73385666 73385752 -48458104 - L1_Mus1 LINE L1 -2138 3745 3664 5 1144 189 0 0 0 chr11 73385752 73385773 -48458083 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 5 1144 24133 131 18 104 chr11 73385773 73388997 -48454859 - L1_Mus1 LINE L1 -2220 3663 415 5 1144 318 277 47 87 chr11 73389201 73389351 -48454505 - L1M2 LINE L1 -1714 4429 4286 5 1144 226 297 0 52 chr11 73389470 73389605 -48454251 + L1_Rod LINE L1 4917 5044 -803 5 1144 1097 97 0 0 chr11 73390301 73390466 -48453390 + L1_Mus2 LINE L1 6378 6542 -24 5 1144 12048 68 1 11 chr11 73390441 73392118 -48451738 + L1Md_F3 LINE L1 3927 5586 -297 5 1144 8202 40 6 0 chr11 73392118 73393107 -48450749 + L1Md_F3 LINE L1 5587 6581 -3 5 1144 28 29 0 0 chr11 73393150 73393185 -48450671 + AT_rich Low_complexity Low_complexity 1 35 0 5 1144 232 329 0 0 chr11 73393586 73393656 -48450200 + ID4_ SINE ID 2 71 -12 5 1144 344 284 137 46 chr11 73394923 73395207 -48448649 - L1MD LINE L1 -2698 3448 3139 5 1144 237 274 124 36 chr11 73395242 73395435 -48448421 - L1MC LINE L1 -3018 3128 2919 5 1144 485 301 64 69 chr11 73395615 73395961 -48447895 - Tigger7 DNA MER2_type -11 2480 2137 5 1144 4226 131 29 111 chr11 73396161 73397096 -48446760 - RMER17A2 LTR ERVK 0 906 49 5 1144 3284 234 35 10 chr11 73397312 73398137 -48445719 - Lx7 LINE L1 -310 7386 6541 5 1144 682 229 11 59 chr11 73398118 73398304 -48445552 - Lx5 LINE L1 -232 6818 6642 5 1144 23 0 0 0 chr11 73399037 73399060 -48444796 + AT_rich Low_complexity Low_complexity 1 23 0 5 1144 24 0 0 0 chr11 73399129 73399153 -48444703 + AT_rich Low_complexity Low_complexity 1 24 0 5 1144 22 35 0 0 chr11 73399462 73399491 -48444365 + AT_rich Low_complexity Low_complexity 1 29 0 5 1144 486 343 34 10 chr11 73399504 73399713 -48444143 - B3 SINE B2 0 216 3 5 1144 411 259 5 0 chr11 73399727 73399861 -48443995 - L1_Mur3 LINE L1 -830 5470 5336 5 17 2415 283 60 3 chr11 73399969 73400738 -48443118 - Lx8 LINE L1 -112 7361 6549 5 1145 1195 288 46 2 chr11 73401055 73401469 -48442387 + Lx6 LINE L1 5841 6272 -1188 5 1145 1883 282 42 8 chr11 73401455 73402053 -48441803 + Lx6 LINE L1 6835 7452 -8 5 1145 482 274 153 48 chr11 73404977 73405245 -48438611 + MLT2D LTR ERVL 1 296 -118 5 1145 265 286 13 0 chr11 73405273 73405350 -48438506 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1145 1170 100 22 16 chr11 73407819 73408002 -48435854 - B2_Mm2 SINE B2 -9 186 3 5 1145 446 97 0 79 chr11 73408026 73408127 -48435729 - L1_Mus3 LINE L1 0 6638 6546 5 1145 376 335 112 21 chr11 73408175 73408416 -48435440 - L1MB5 LINE L1 -166 6008 5746 5 1145 4533 149 8 8 chr11 73408698 73409983 -48433873 + Lx2B LINE L1 5123 6408 -592 5 1145 878 271 12 110 chr11 73409972 73410382 -48433474 + Lx2B LINE L1 6631 7000 0 5 1145 2411 192 39 42 chr11 73410389 73410980 -48432876 + Lx5 LINE L1 5730 6318 -732 5 1145 1843 217 183 2 chr11 73411185 73411666 -48432190 + Lx5 LINE L1 6327 6894 -156 5 1145 229 278 54 27 chr11 73412740 73412814 -48431042 + B1F2 SINE Alu 5 80 -69 5 1145 6185 125 42 5 chr11 73414059 73415188 -48428668 + Lx LINE L1 5483 6654 0 5 1145 1213 133 0 19 chr11 73415180 73415394 -48428462 + L1_Mus4 LINE L1 6374 6583 -53 5 1145 27 29 0 0 chr11 73417034 73417068 -48426788 + AT_rich Low_complexity Low_complexity 1 34 0 5 1145 3660 285 77 26 chr11 73417258 73417780 -48426076 - Lx6 LINE L1 -8 7452 6892 5 1145 369 0 0 0 chr11 73417780 73417821 -48426035 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1145 3660 285 77 26 chr11 73417821 73418598 -48425258 - Lx6 LINE L1 -569 6891 6086 5 1145 758 35 44 0 chr11 73418598 73418711 -48425145 + (CCCCCT)n Simple_repeat Simple_repeat 5 122 0 5 1145 3660 285 77 26 chr11 73418711 73418960 -48424896 - Lx6 LINE L1 -1375 6085 5826 5 1145 315 0 0 0 chr11 73419259 73419294 -48424562 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1145 3656 5 0 0 chr11 73419337 73419742 -48424114 - L1Md_T LINE L1 0 6582 6178 5 1145 2560 88 5 3 chr11 73419742 73420120 -48423736 - L1_Mus3 LINE L1 -224 6414 6036 5 1145 442 173 91 0 chr11 73420115 73420225 -48423631 - Lx5 LINE L1 -1236 5814 5695 5 1145 4694 158 21 13 chr11 73420304 73421300 -48422556 - L1_Mur2 LINE L1 -3006 2871 1868 5 1145 290 348 39 124 chr11 73421483 73421716 -48422140 - RLTR25B LTR ERVK -801 227 15 5 1145 10619 105 6 5 chr11 73421718 73423421 -48420435 - L1_Mur1 LINE L1 -2925 2961 1257 5 1145 519 95 0 0 chr11 73423421 73423495 -48420361 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 1145 5117 111 16 0 chr11 73423514 73424277 -48419579 - L1_Mus3 LINE L1 -2 6636 5862 5 1145 39374 9 0 2 chr11 73424277 73431689 -48412167 - L1Md_A LINE L1 -2 6580 1 5 1145 26264 122 8 13 chr11 73431684 73434755 -48409101 - L1_Mm LINE L1 -9 5874 2830 5 1145 2742 25 28 0 chr11 73434755 73435073 -48408783 - IAPLTR2b LTR ERVK 0 327 1 5 1145 26264 122 8 13 chr11 73435073 73436453 -48407403 - L1_Mm LINE L1 -3054 2829 1442 5 1145 22 0 0 0 chr11 73436472 73436494 -48407362 + AT_rich Low_complexity Low_complexity 1 22 0 5 1145 34846 64 9 8 chr11 73436494 73442718 -48401138 - L1Md_F3 LINE L1 0 6584 357 5 1145 882 139 0 0 chr11 73442720 73442849 -48401007 - B1_Mm SINE Alu -18 129 1 5 1145 7100 110 7 12 chr11 73442851 73444053 -48399803 - L1VL1 LINE L1 -2501 1197 3 5 1145 2875 195 36 32 chr11 73444054 73445012 -48398844 - L1_Mur1 LINE L1 -5711 1273 3 5 1145 633 113 26 32 chr11 73445958 73446113 -48397743 + CT-rich Low_complexity Low_complexity 2 155 0 5 1145 1182 264 37 27 chr11 73446291 73446587 -48397269 + MTD LTR MaLR 68 366 -53 5 1145 967 357 58 25 chr11 73446637 73447619 -48396237 - Lx7 LINE L1 -545 7151 6138 5 1145 231 235 82 0 chr11 73448019 73448104 -48395752 - Lx8 LINE L1 -1581 5892 5801 5 1145 1178 291 81 22 chr11 73448176 73448858 -48394998 + L1_Mur3 LINE L1 3396 4117 -1763 5 1145 29 0 0 0 chr11 73448910 73448939 -48394917 + AT_rich Low_complexity Low_complexity 1 29 0 5 1145 186 191 0 0 chr11 73449038 73449080 -48394776 + (CATA)n Simple_repeat Simple_repeat 2 43 0 5 1145 23 33 0 0 chr11 73449171 73449201 -48394655 + AT_rich Low_complexity Low_complexity 1 30 0 5 1145 506 29 15 0 chr11 73449522 73449590 -48394266 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1145 180 0 0 0 chr11 73449743 73449763 -48394093 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 5 1145 1063 245 3 11 chr11 73449779 73450064 -48393792 - L1_Mur2 LINE L1 -1452 4425 4143 5 1145 2193 252 43 12 chr11 73450082 73450720 -48393136 - Lx3C LINE L1 -3 7055 6311 6 1145 1833 205 53 4 chr11 73450713 73451184 -48392672 - L1_Mur2 LINE L1 -1722 4155 3662 5 1145 293 228 75 21 chr11 73451423 73451517 -48392339 + MLT1A1 LTR MaLR 306 404 -4 6 1145 8219 208 54 17 chr11 73451541 73453103 -48390753 - L1_Mur2 LINE L1 -2198 3679 2065 5 1145 270 0 0 0 chr11 73453103 73453133 -48390723 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1145 8219 211 48 19 chr11 73453133 73454245 -48389611 - L1_Mur2 LINE L1 -3813 2064 920 5 1145 4679 57 0 2 chr11 73455591 73456171 -48387685 + L1Md_F2 LINE L1 6000 6578 -4 6 1145 518 242 43 43 chr11 73457337 73457897 -48385959 + MMSAT4 Satellite Satellite 1 560 0 6 1145 393 236 31 33 chr11 73458009 73458407 -48385449 + MMSAT4 Satellite Satellite 1 397 -2 6 1145 438 204 40 35 chr11 73458764 73458936 -48384920 - MMSAT4 Satellite Satellite -32 172 1 6 1145 261 0 0 0 chr11 73459574 73459603 -48384253 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1145 34230 38 2 8 chr11 73460301 73465357 -48378499 + L1Md_T LINE L1 570 5586 -297 6 1145 8113 47 2 0 chr11 73465357 73466349 -48377507 + L1Md_T LINE L1 5587 6580 -2 6 1145 7307 176 23 13 chr11 73466707 73468382 -48375474 + Lx4A LINE L1 5349 7054 -4 6 1145 24 0 0 0 chr11 73468395 73468419 -48375437 + AT_rich Low_complexity Low_complexity 1 24 0 6 1145 475 252 46 39 chr11 73468584 73468737 -48375119 + MLT2D LTR ERVL 102 255 -159 6 1145 7912 129 20 3 chr11 73469857 73472034 -48371822 + Lx3A LINE L1 4765 6974 -7 6 1145 21 0 0 0 chr11 73472036 73472057 -48371799 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 5087 72 87 3 chr11 73474575 73475322 -48368534 + RLTR22_Mus LTR ERVK 1 810 -998 6 1145 424 303 49 66 chr11 73475586 73475812 -48368044 + RMER12 LTR ERVK 1101 1322 0 6 1145 312 172 0 0 chr11 73475881 73475939 -48367917 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1145 332 339 98 5 chr11 73476052 73476245 -48367611 - MLT2D LTR ERVL -128 286 76 6 1145 351 0 0 0 chr11 73477968 73478007 -48365849 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1145 414 0 0 0 chr11 73478007 73478052 -48365804 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1145 333 47 0 0 chr11 73479242 73479285 -48364571 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1145 27 0 0 0 chr11 73479288 73479315 -48364541 + AT_rich Low_complexity Low_complexity 1 27 0 6 1145 423 0 0 0 chr11 73479534 73479581 -48364275 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1145 8704 127 42 48 chr11 73479585 73481088 -48362768 - L1_Mus4 LINE L1 -28 6608 5077 6 1145 426 241 42 63 chr11 73481054 73481196 -48362660 + MT2B LTR ERVL 140 278 -323 6 1145 989 49 0 0 chr11 73481088 73481211 -48362645 + B1_Mus1 SINE Alu 14 136 -12 6 1145 297 0 0 0 chr11 73481211 73481244 -48362612 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1145 8704 163 89 126 chr11 73481244 73481477 -48362379 - L1_Mus4 LINE L1 -807 5076 4736 6 1145 1094 61 6 70 chr11 73481477 73481635 -48362221 - B1_Mus1 SINE Alu 0 148 1 6 1145 8704 163 89 126 chr11 73481635 73481836 -48362020 - L1_Mus4 LINE L1 -1148 4735 4631 6 1145 5643 72 4 12 chr11 73481836 73482587 -48361269 - L1_Mus2 LINE L1 0 6566 5822 6 1145 8704 163 89 126 chr11 73482587 73483827 -48360029 - L1_Mus4 LINE L1 -1253 4630 3388 6 1145 1685 118 0 21 chr11 73483823 73484094 -48359762 + L1_Mur1 LINE L1 3003 3273 -2609 6 1145 211 37 0 0 chr11 73484094 73484121 -48359735 + PB1D9 SINE Alu 1 27 -93 6 1145 369 62 0 0 chr11 73484125 73484173 -48359683 + (TAA)n Simple_repeat Simple_repeat 2 49 0 6 1145 1307 175 0 169 chr11 73484173 73484289 -48359567 + L1_Mur1 LINE L1 3278 3355 -2531 6 1145 1008 311 62 8 chr11 73484293 73484694 -48359162 - Lx6 LINE L1 -118 7342 6920 6 1145 414 0 0 0 chr11 73484698 73484744 -48359112 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1145 21 0 0 0 chr11 73484779 73484800 -48359056 + AT_rich Low_complexity Low_complexity 1 21 0 6 1145 357 172 19 48 chr11 73484808 73484912 -48358944 - Lx LINE L1 -7 6647 6547 6 1145 3623 102 0 16 chr11 73484912 73485460 -48358396 - L1_Mm LINE L1 -122 5761 5223 6 1145 7497 68 1 1 chr11 73485459 73486502 -48357354 + L1Md_F2 LINE L1 3767 4809 -1074 6 1145 2105 124 23 11 chr11 73486504 73486855 -48357001 - IAPEY2_LTR LTR ERVK -2 355 1 6 1145 1819 87 16 0 chr11 73486855 73487109 -48356747 - IAPEY3-int LTR ERVK 0 7680 7423 6 1145 51510 84 10 1 chr11 73487111 73494319 -48349537 - IAPEY3-int LTR ERVK -409 7271 1 6 1145 2205 105 34 26 chr11 73494321 73494673 -48349183 - IAPEY2_LTR LTR ERVK -2 355 1 6 1145 5546 86 0 3 chr11 73494673 73495457 -48348399 + L1Md_F2 LINE L1 4804 5585 -298 6 1145 7048 89 8 12 chr11 73495458 73496457 -48347399 + L1Md_F2 LINE L1 5587 6581 -1 6 1145 30 27 0 0 chr11 73496514 73496551 -48347305 + AT_rich Low_complexity Low_complexity 1 37 0 6 1145 195 42 0 0 chr11 73496571 73496595 -48347261 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 6 1145 6320 175 19 5 chr11 73496597 73497979 -48345877 - L1_Mur2 LINE L1 -3015 2862 1461 6 1145 250 319 51 133 chr11 73497979 73498174 -48345682 - RLTR25B LTR ERVK 0 1028 850 6 1145 8197 95 51 9 chr11 73498482 73499926 -48343930 + Lx3_Mus LINE L1 5487 7003 -6 6 1145 186 103 0 0 chr11 73499961 73499990 -48343866 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1145 3705 102 2 8 chr11 73500802 73501328 -48342528 + L1Md_F2 LINE L1 6060 6582 0 1 1145 720 237 26 64 chr11 73502784 73503018 -48340838 - URR1B DNA MER1_type 0 225 1 2 1145 350 297 14 14 chr11 73503186 73503326 -48340530 + MurSatRep1 Unknown Unknown 606 745 -1392 3 1145 213 65 0 0 chr11 73504258 73504289 -48339567 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 4 1145 999 305 129 9 chr11 73504536 73504993 -48338863 - Lx7 LINE L1 -584 7112 6601 5 1145 276 378 0 0 chr11 73505131 73505221 -48338635 + RSINE1 SINE B4 3 92 -73 6 1145 262 293 34 8 chr11 73505495 73505612 -48338244 - Lx8 LINE L1 -1553 5920 5801 7 1145 1301 292 76 22 chr11 73505668 73506441 -48337415 + L1_Mur3 LINE L1 3386 4200 -1680 8 1145 331 147 39 10 chr11 73506524 73506627 -48337229 + (TA)n Simple_repeat Simple_repeat 2 107 0 9 1145 244 265 15 0 chr11 73506983 73507051 -48336805 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1145 2001 111 17 37 chr11 73507110 73507491 -48336365 - RLTR10A LTR ERVK 0 359 1 1 1145 992 216 4 27 chr11 73507588 73507845 -48336011 - L1_Mur2 LINE L1 -1419 4458 4208 1 1145 3620 122 9 21 chr11 73507854 73508432 -48335424 - L1_Mus4 LINE L1 -4 6632 6062 1 1145 450 141 0 0 chr11 73508453 73508524 -48335332 + L1_Mur3 LINE L1 4505 4575 -1305 8 1145 313 143 0 0 chr11 73508525 73508574 -48335282 - L1_Mm LINE L1 -423 5460 5412 1 1145 4378 123 7 3 chr11 73508570 73509286 -48334570 - MusHAL1 LINE L1 -739 1973 1255 1 1145 1357 40 6 0 chr11 73509286 73509459 -48334397 - L1Md_A LINE L1 0 6582 6409 1 1145 34087 82 15 3 chr11 73509469 73515881 -48327975 - L1Md_F2 LINE L1 -14 6571 101 1 1145 226 143 0 0 chr11 73515859 73515894 -48327962 - L1Md_F2 LINE L1 -5986 633 599 1 1145 7717 132 7 9 chr11 73515894 73517665 -48326191 - L1VL4 LINE L1 -1448 2111 345 1 1145 37 39 0 0 chr11 73517759 73517810 -48326046 + AT_rich Low_complexity Low_complexity 1 51 0 1 1145 2619 237 60 28 chr11 73517810 73518417 -48325439 - Lx3C LINE L1 -54 6996 6311 2 1145 11287 198 60 10 chr11 73518408 73520390 -48323466 - L1_Mur2 LINE L1 -1720 4157 2061 2 1145 333 0 0 0 chr11 73520390 73520427 -48323429 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1145 11287 190 61 8 chr11 73520427 73521345 -48322511 - L1_Mur2 LINE L1 -3817 2060 1108 2 1145 214 200 0 0 chr11 73521345 73521385 -48322471 + T-rich Low_complexity Low_complexity 1 40 0 2 1145 3281 35 5 2 chr11 73521421 73521821 -48322035 - L1Md_A LINE L1 0 6582 6182 2 1145 904 212 19 11 chr11 73522707 73522949 -48320907 - L1_Mur2 LINE L1 -2794 1121 875 2 1145 715 234 22 22 chr11 73525235 73526117 -48317739 + MMSAT4 Satellite Satellite 1 882 -5 2 1145 375 245 74 42 chr11 73526156 73526531 -48317325 + MMSAT4 Satellite Satellite 1 387 -2 2 1145 342 0 0 0 chr11 73527497 73527535 -48316321 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1145 399 214 34 0 chr11 73528098 73528187 -48315669 + RLTR25B LTR ERVK 937 1028 0 2 1145 394 200 12 12 chr11 73528187 73528273 -48315583 - L1_Rod LINE L1 -715 5132 5047 2 1145 369 93 0 0 chr11 73528464 73528518 -48315338 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1145 2020 303 51 17 chr11 73528704 73529473 -48314383 + Lx8 LINE L1 6552 7346 -127 3 1145 21 0 0 0 chr11 73530115 73530136 -48313720 + AT_rich Low_complexity Low_complexity 1 21 0 3 143 2478 125 145 99 chr11 73531068 73531564 -48312292 + MURVY-LTR LTR ERV1 1 519 0 3 1146 845 316 69 37 chr11 73532254 73532688 -48311168 + Lx9 LINE L1 6710 7157 -487 3 1146 26 30 0 0 chr11 73532756 73532789 -48311067 + AT_rich Low_complexity Low_complexity 1 33 0 3 1146 355 235 0 0 chr11 73533038 73533106 -48310750 + Lx9 LINE L1 6848 6915 -729 3 1146 249 159 0 0 chr11 73533172 73533216 -48310640 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 3 1146 527 307 23 8 chr11 73533374 73533502 -48310354 - B3A SINE B2 -67 131 2 3 1146 380 292 216 8 chr11 73533836 73534081 -48309775 + L1MB5 LINE L1 5593 5888 -286 3 1146 1668 239 7 21 chr11 73534737 73535164 -48308692 + Lx2B LINE L1 6576 7000 0 3 1146 761 284 24 0 chr11 73536332 73536501 -48307355 + RMER21A LTR ERV1 18 190 -757 4 1146 1971 312 82 14 chr11 73536542 73537315 -48306541 + Lx6 LINE L1 6620 7447 -13 4 1146 30 0 0 0 chr11 73542092 73542122 -48301734 + AT_rich Low_complexity Low_complexity 1 30 0 4 1146 39441 27 0 6 chr11 73542662 73548642 -48295214 - L1Md_T LINE L1 0 6582 644 4 1146 390 294 150 7 chr11 73548974 73549268 -48294588 - L1MB8 LINE L1 -116 6062 5727 4 1146 21 57 0 0 chr11 73549342 73549377 -48294479 + AT_rich Low_complexity Low_complexity 1 35 0 4 1146 3125 19 6 3 chr11 73549459 73549825 -48294031 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1146 26158 19 1 0 chr11 73549825 73552778 -48291078 - IAPEz-int LTR ERVK 0 6481 3525 4 1146 914 81 24 0 chr11 73552778 73552901 -48290955 - IAPEz-int LTR ERVK -2770 4910 4785 4 1146 1763 123 4 15 chr11 73552898 73553163 -48290693 - IAPEz-int LTR ERVK -5183 2497 2236 4 1146 442 66 0 32 chr11 73553152 73553215 -48290641 - IAPEz-int LTR ERVK -5062 1419 1359 4 1146 3416 80 12 14 chr11 73553215 73553945 -48289911 - IAPEz-int LTR ERVK -5819 662 8 4 1146 3125 19 6 3 chr11 73553945 73554311 -48289545 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1146 291 257 0 54 chr11 73554513 73554587 -48289269 + B3A SINE B2 1 70 -128 4 1146 245 243 53 79 chr11 73554599 73554675 -48289181 + B3 SINE B2 131 204 -12 4 1146 1735 333 67 23 chr11 73554727 73555523 -48288333 - Lx9 LINE L1 -447 7197 6367 4 1146 936 274 35 43 chr11 73555750 73555937 -48287919 + Lx9 LINE L1 5433 5614 -233 5 1146 1775 193 49 3 chr11 73555937 73556286 -48287570 - ORR1B2 LTR MaLR 0 367 3 5 1146 936 285 40 40 chr11 73556286 73556560 -48287296 + Lx9 LINE L1 5615 5932 -1712 5 1146 2804 30 0 0 chr11 73556582 73556914 -48286942 + L1Md_T LINE L1 6249 6580 -2 5 1146 236 147 0 0 chr11 73556919 73556953 -48286903 - L1_Mur3 LINE L1 -2089 3791 3758 5 1146 213 39 0 0 chr11 73556953 73556979 -48286877 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1146 531 237 36 62 chr11 73557048 73557273 -48286583 - L1_Mur3 LINE L1 -1507 4373 4155 5 1146 300 102 0 0 chr11 73557298 73557347 -48286509 + (CTTTG)n Simple_repeat Simple_repeat 1 49 0 5 1146 640 221 0 113 chr11 73557347 73557515 -48286341 - B1_Mur4 SINE Alu -1 149 1 5 1146 700 239 117 0 chr11 73557564 73557761 -48286095 - URR1A DNA MER1_type -6 220 1 5 1146 499 321 65 23 chr11 73557765 73558071 -48285785 - L1M3 LINE L1 -2000 4140 3822 5 1146 2609 172 13 53 chr11 73558071 73558617 -48285239 - RLTR28 LTR ERVL 0 524 1 6 1146 1419 289 52 47 chr11 73558678 73559435 -48284421 - Lx6 LINE L1 -26 7434 6507 6 1146 276 167 0 94 chr11 73559438 73559539 -48284317 - L1M3 LINE L1 -2391 3755 3663 5 1146 261 0 0 0 chr11 73559607 73559636 -48284220 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1146 878 345 21 14 chr11 73559660 73559942 -48283914 - B4 SINE B4 -4 288 5 6 1146 2597 101 10 0 chr11 73560041 73560438 -48283418 - L1_Mur1 LINE L1 -1762 4124 3724 6 1146 498 17 0 0 chr11 73560438 73560497 -48283359 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1146 8846 97 7 5 chr11 73560499 73561801 -48282055 + L1_Mur1 LINE L1 4139 5442 -444 6 1146 2329 124 11 54 chr11 73561801 73562246 -48281610 + RMER17A LTR ERVK 1 426 -325 6 1146 7068 41 0 5 chr11 73562293 73563152 -48280704 - L1Md_F2 LINE L1 0 6582 5728 6 1146 4829 47 2 2 chr11 73563151 73563865 -48279991 + L1Md_F3 LINE L1 5461 6174 -410 6 1146 23993 82 1 12 chr11 73563863 73568335 -48275521 - L1Md_F LINE L1 -1272 4611 191 7 1146 26 0 0 0 chr11 73568369 73568395 -48275461 + AT_rich Low_complexity Low_complexity 1 26 0 7 1146 28 0 0 0 chr11 73568408 73568436 -48275420 + AT_rich Low_complexity Low_complexity 1 28 0 7 1146 235 343 10 10 chr11 73568667 73568770 -48275086 + MLT2B1 LTR ERVL 10 112 -444 7 1146 336 236 79 0 chr11 73568801 73568928 -48274928 + Lx9 LINE L1 7508 7644 0 7 1146 519 346 39 47 chr11 73568946 73569204 -48274652 + MLT2B1 LTR ERVL 172 427 -93 7 1146 574 122 9 0 chr11 73569408 73569515 -48274341 - L1_Mus4 LINE L1 -2 6634 6527 7 1146 520 99 0 0 chr11 73569538 73569609 -48274247 + U6 snRNA snRNA 1 71 -36 7 1146 583 301 28 0 chr11 73569831 73570007 -48273849 + Lx8 LINE L1 6765 6945 -528 7 1146 323 352 8 8 chr11 73570008 73570131 -48273725 - Lx8 LINE L1 -155 7318 7196 7 1146 500 314 17 59 chr11 73570181 73570418 -48273438 - Lx9 LINE L1 -425 7219 6993 7 1146 667 331 68 9 chr11 73570511 73570870 -48272986 + RMER1C Other Other 228 712 -630 8 1146 1982 298 61 32 chr11 73570870 73571625 -48272231 + RMER1C Other Other 254 1030 -312 8 1146 1429 271 158 34 chr11 73571697 73572369 -48271487 - Lx9 LINE L1 -726 6918 6164 7 1146 945 249 110 33 chr11 73572432 73572842 -48271014 + Lx7 LINE L1 5422 5896 -1800 8 1146 408 325 95 20 chr11 73573011 73573050 -48270806 - L1M3 LINE L1 -1551 4332 4284 8 1146 621 0 0 0 chr11 73573050 73573119 -48270737 + (TC)n Simple_repeat Simple_repeat 1 69 0 8 1146 567 311 58 26 chr11 73573119 73573439 -48270417 - L1M3 LINE L1 -1600 4283 3949 8 1146 8748 152 18 3 chr11 73573436 73575368 -48268488 - Lx2B LINE L1 -18 6982 5010 8 1146 791 81 40 7 chr11 73575371 73575521 -48268335 - MusHAL1 LINE L1 -10 2702 2548 8 1146 7919 166 104 17 chr11 73575519 73576153 -48267703 - Lx2B LINE L1 -2786 3100 2466 8 1146 180 0 0 0 chr11 73576153 73576173 -48267683 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 8 1146 7919 166 104 17 chr11 73576173 73576893 -48266963 - Lx2B LINE L1 -3421 2465 1596 8 1146 2127 140 45 6 chr11 73576893 73577245 -48266611 + RLTR9A LTR ERVK 1 366 -2 8 1146 7919 126 36 4 chr11 73577245 73578278 -48265578 - Lx2B LINE L1 -4291 1595 549 8 1146 11308 170 87 81 chr11 73578280 73578569 -48265287 - L1VL4 LINE L1 -859 5027 4740 8 1146 272 25 0 48 chr11 73578569 73578611 -48265245 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 9 1146 11308 170 87 81 chr11 73578611 73581027 -48262829 - L1VL4 LINE L1 -1147 4739 2262 8 1146 1422 120 50 0 chr11 73581027 73581268 -48262588 - Lx2 LINE L1 -15 6982 6730 9 1146 11308 156 37 38 chr11 73581268 73582150 -48261706 - L1VL4 LINE L1 -3625 2261 796 8 1146 2117 189 30 4 chr11 73582345 73582806 -48261050 - L1_Mur2 LINE L1 -971 4906 4434 9 1146 782 301 80 19 chr11 73582862 73583174 -48260682 + Lx5 LINE L1 6044 6374 -676 9 1146 1100 298 166 29 chr11 73583172 73583653 -48260203 + Lx6 LINE L1 6802 7348 -112 9 1146 713 238 28 39 chr11 73583653 73583832 -48260024 - RLTR26 LTR ERVK -465 177 1 9 1146 291 203 0 0 chr11 73584165 73584229 -48259627 + (TATG)n Simple_repeat Simple_repeat 4 67 0 9 1146 1597 169 15 92 chr11 73584231 73584569 -48259287 + ORR1B1 LTR MaLR 81 392 -2 9 1146 245 128 21 0 chr11 73584572 73584619 -48259237 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 9 1146 1208 178 53 168 chr11 73584621 73584972 -48258884 - RMER12 LTR ERVK 0 1322 1004 9 1146 1262 74 6 0 chr11 73584972 73585147 -48258709 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 1146 1208 178 53 168 chr11 73585147 73585207 -48258649 - RMER12 LTR ERVK -319 1003 959 9 1146 387 0 0 0 chr11 73585228 73585271 -48258585 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1146 4402 125 16 35 chr11 73585753 73586501 -48257355 - RMER12 LTR ERVK -585 737 4 9 1146 352 200 29 7 chr11 73586505 73586641 -48257215 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1146 545 302 119 29 chr11 73586687 73586806 -48257050 - Lx8 LINE L1 0 7473 7332 1 1146 267 31 0 0 chr11 73586806 73586838 -48257018 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1 1146 545 302 119 29 chr11 73586838 73587028 -48256828 - Lx8 LINE L1 -142 7331 7136 1 1146 1168 334 94 34 chr11 73587026 73587703 -48256153 - Lx8 LINE L1 -8 7636 6788 1 1146 261 256 95 9 chr11 73587812 73587941 -48255915 - L1M4 LINE L1 -323 5851 5712 1 1146 304 351 45 45 chr11 73588159 73588293 -48255563 - B1F1 SINE Alu -15 134 1 1 1146 2494 132 5 18 chr11 73591633 73592033 -48251823 + L1_Mus3 LINE L1 6243 6637 -1 1 1146 245 264 8 102 chr11 73593184 73593302 -48250554 + MLT2D LTR ERVL 52 158 -256 1 1146 468 0 0 0 chr11 73594420 73594472 -48249384 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1146 458 324 85 28 chr11 73597356 73597604 -48246252 - MLT2D LTR ERVL -44 370 109 1 1146 211 200 0 0 chr11 73598256 73598291 -48245565 + polypurine Low_complexity Low_complexity 3 37 0 1 1146 7126 75 70 4 chr11 73599137 73600207 -48243649 + L1_Mus3 LINE L1 5484 6632 -6 1 1146 1006 319 50 80 chr11 73601593 73602168 -48241688 + RMER4B LTR ERVK 17 574 -11 1 1146 249 237 65 13 chr11 73603202 73603279 -48240577 + ORR1D2 LTR MaLR 288 368 -2 1 1146 312 158 0 0 chr11 73603335 73603392 -48240464 + (ATTG)n Simple_repeat Simple_repeat 1 57 0 1 1146 3003 290 79 51 chr11 73603417 73604651 -48239205 + ORR1D2-int LTR MaLR 53 1320 -50 1 1146 416 365 78 0 chr11 73604640 73604807 -48239049 + ORR1D2 LTR MaLR 24 203 -167 1 1146 1706 211 84 33 chr11 73604809 73605259 -48238597 + Lx9 LINE L1 7017 7489 -155 1 1146 235 217 22 88 chr11 73605395 73605486 -48238370 + L1M3 LINE L1 5572 5656 -515 1 1146 252 0 0 0 chr11 73605569 73605597 -48238259 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1146 329 236 8 23 chr11 73605623 73605723 -48238133 + (TA)n Simple_repeat Simple_repeat 1 98 0 1 1146 227 73 49 0 chr11 73605723 73605764 -48238092 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 1 1146 329 236 8 23 chr11 73605764 73605793 -48238063 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1146 12766 131 24 24 chr11 73606150 73608802 -48235054 + L1Md_F LINE L1 670 3312 -2571 1 1146 1259 261 40 9 chr11 73608805 73609133 -48234723 + RMER19C LTR ERVK 272 609 -2 1 1146 1229 296 24 11 chr11 73609177 73609553 -48234303 - Lx8 LINE L1 -329 7144 6764 1 1146 1011 199 190 34 chr11 73609959 73610305 -48233551 + RMER16 LTR ERVK 1 533 0 1 1146 292 336 17 33 chr11 73610345 73610465 -48233391 - B1F SINE Alu -15 134 17 1 1146 614 68 11 0 chr11 73610511 73610599 -48233257 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1146 790 47 0 19 chr11 73610600 73610708 -48233148 - B1_Mm SINE Alu 0 147 42 1 1146 313 137 93 27 chr11 73610645 73610720 -48233136 - RLTR25B LTR ERVK -519 509 430 1 1146 405 0 0 0 chr11 73611098 73611143 -48232713 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1 1146 378 0 0 0 chr11 73611143 73611185 -48232671 + (GAA)n Simple_repeat Simple_repeat 1 42 0 1 1146 243 0 0 0 chr11 73611185 73611212 -48232644 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 1146 2153 116 54 17 chr11 73613401 73613751 -48230105 + Lx LINE L1 6279 6641 -13 1 1146 595 264 0 0 chr11 73613751 73613876 -48229980 + B3 SINE B2 72 196 -20 1 1146 21 82 0 0 chr11 73614191 73614240 -48229616 + AT_rich Low_complexity Low_complexity 1 49 0 1 1146 1756 94 8 4 chr11 73615703 73615960 -48227896 - L1_Mus3 LINE L1 0 6638 6381 1 1146 307 313 77 65 chr11 73617958 73618082 -48225774 - L1MB8 LINE L1 -135 6043 5913 1 1146 2959 57 0 23 chr11 73618082 73618474 -48225382 + L1Md_F2 LINE L1 6200 6582 0 1 1146 307 313 77 65 chr11 73618474 73618500 -48225356 - L1MB8 LINE L1 -266 5912 5897 1 1146 1803 226 8 203 chr11 73618500 73619101 -48224755 - RMER19C LTR ERVK -2 609 132 1 1146 226 0 29 29 chr11 73619101 73619136 -48224720 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1146 1803 226 8 203 chr11 73619136 73619291 -48224565 - RMER19C LTR ERVK -480 131 1 1 1146 307 313 77 65 chr11 73619291 73619399 -48224457 - L1MB8 LINE L1 -282 5896 5781 1 1146 11679 187 112 26 chr11 73619703 73622839 -48221017 + L1_Mur2 LINE L1 2178 5580 -297 1 1146 8026 49 2 1 chr11 73622839 73623832 -48220024 + L1Md_F3 LINE L1 5587 6580 -4 1 1146 328 174 71 14 chr11 73623960 73624030 -48219826 + PB1D10 SINE Alu 43 116 -1 1 1146 2420 184 16 20 chr11 73624067 73624562 -48219294 - L1_Mur2 LINE L1 -336 5541 5049 1 1146 884 299 31 27 chr11 73624568 73624860 -48218996 + Lx6 LINE L1 7142 7434 -26 1 1146 192 217 0 0 chr11 73625059 73625105 -48218751 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 1 1146 366 175 49 12 chr11 73625105 73625186 -48218670 + ORR1B1 LTR MaLR 33 116 -278 1 1146 307 232 0 24 chr11 73625188 73625272 -48218584 - L1M4 LINE L1 -340 5838 5757 1 1146 362 301 39 54 chr11 73625562 73625692 -48218164 - B1F1 SINE Alu -15 134 7 1 1146 342 0 0 0 chr11 73626236 73626274 -48217582 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1146 23 0 0 0 chr11 73626598 73626621 -48217235 + AT_rich Low_complexity Low_complexity 1 23 0 1 1146 1144 62 7 0 chr11 73626903 73627049 -48216807 + B1_Mus1 SINE Alu 2 148 0 1 1146 21 0 0 0 chr11 73627579 73627600 -48216256 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 183 283 18 92 chr11 73629410 73629519 -48214337 + L3 LINE CR1 2407 2507 -1982 1 1146 226 285 180 12 chr11 73630741 73630791 -48213065 - L1MC LINE L1 -2758 3388 3338 1 1146 234 0 0 0 chr11 73630791 73630817 -48213039 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1146 405 0 0 0 chr11 73630817 73630861 -48212995 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1146 226 285 180 12 chr11 73630861 73631018 -48212838 - L1MC LINE L1 -2809 3337 3143 1 1146 347 56 19 0 chr11 73631018 73631072 -48212784 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1146 226 285 180 12 chr11 73631072 73631263 -48212593 - L1MC LINE L1 -3004 3142 2923 1 1146 1396 209 60 131 chr11 73631350 73631763 -48212093 + ORR1B1 LTR MaLR 3 386 -8 1 1146 1227 193 98 37 chr11 73631873 73632169 -48211687 + RLTR46 LTR ERVK 1 314 -6 1 1146 712 326 118 48 chr11 73632318 73632936 -48210920 - MER44D DNA MER2_type -8 697 37 1 1146 359 292 28 19 chr11 73633035 73633143 -48210713 - MTEa LTR MaLR -84 295 187 1 1146 356 322 72 14 chr11 73633162 73633370 -48210486 + L1MC LINE L1 4435 4654 -1492 1 1146 255 303 108 13 chr11 73633439 73633596 -48210260 - Lx7 LINE L1 0 7696 7525 1 1146 340 200 0 0 chr11 73633698 73633758 -48210098 - Lx7 LINE L1 -371 7325 7266 1 1146 2544 279 39 25 chr11 73633773 73634464 -48209392 + Lx6 LINE L1 6576 7276 -184 1 1146 1090 230 33 77 chr11 73634486 73634644 -48209212 - Lx7 LINE L1 -1063 6633 6481 1 1146 1159 36 0 0 chr11 73634644 73634782 -48209074 + B1_Mus1 SINE Alu 2 139 -9 1 1146 1090 230 33 77 chr11 73634782 73634896 -48208960 - Lx7 LINE L1 -1216 6480 6373 1 1146 557 248 8 0 chr11 73634896 73635021 -48208835 + Lx7 LINE L1 6257 6382 -1314 1 1146 11383 158 25 15 chr11 73637840 73640009 -48203847 - L1_Mur2 LINE L1 -367 5510 3320 1 1146 38615 49 1 23 chr11 73640005 73646531 -48197325 - L1Md_A LINE L1 -3 6579 202 1 1146 1439 121 11 23 chr11 73646531 73646794 -48197062 - MusHAL1 LINE L1 -571 2141 1882 1 1146 425 248 46 28 chr11 73646991 73647161 -48196695 + RLTR9E LTR ERVK 224 416 -21 1 1146 195 100 0 0 chr11 73648356 73648386 -48195470 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1146 614 341 38 45 chr11 73648809 73649408 -48194448 - MERVK26-int LTR ERVK -1814 5105 4511 1 1146 622 284 86 94 chr11 73650585 73651072 -48192784 - MERVK26-int LTR ERVK -3836 3083 2601 1 1146 4027 120 146 57 chr11 73651668 73652482 -48191374 + RMER17D LTR ERVK 1 887 -2 1 1146 3752 137 19 64 chr11 73653906 73654692 -48189164 - RMER17A LTR ERVK 0 751 1 1 1146 695 311 63 4 chr11 73654695 73654934 -48188922 - B4A SINE B4 -39 253 1 1 1146 454 295 171 21 chr11 73655014 73655201 -48188655 + B3 SINE B2 2 216 0 1 1146 321 172 0 0 chr11 73655749 73655813 -48188043 + (TTG)n Simple_repeat Simple_repeat 3 66 0 1 1146 1464 228 26 19 chr11 73656035 73656344 -48187512 - Lx5 LINE L1 -5 7045 6735 1 1146 371 277 20 0 chr11 73656602 73656703 -48187153 + MER33 DNA MER1_type 10 112 -212 1 1146 502 283 86 14 chr11 73657115 73657337 -48186519 - L1MA8 LINE L1 -23 6268 6031 1 1146 499 15 14 14 chr11 73657609 73657678 -48186178 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 1 1146 33 66 0 0 chr11 73657860 73657921 -48185935 + AT_rich Low_complexity Low_complexity 1 61 0 1 1146 23 0 0 0 chr11 73657953 73657976 -48185880 + AT_rich Low_complexity Low_complexity 1 23 0 1 1146 901 221 25 20 chr11 73658026 73658225 -48185631 - B3 SINE B2 -11 205 6 1 1146 21 0 0 0 chr11 73658453 73658474 -48185382 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 2331 15 4 0 chr11 73658474 73658748 -48185108 - L1_Mm LINE L1 -415 5468 5194 1 1146 2918 24 0 0 chr11 73658748 73659086 -48184770 + L1Md_F2 LINE L1 6240 6577 -5 1 1146 320 0 0 24 chr11 73659353 73659394 -48184462 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1 1146 188 191 42 21 chr11 73661030 73661078 -48182778 - L3 LINE CR1 -910 3579 3531 1 1146 21 0 0 0 chr11 73661977 73661998 -48181858 + AT_rich Low_complexity Low_complexity 1 21 0 1 1147 393 158 0 0 chr11 73663632 73663714 -48180142 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1147 186 43 0 0 chr11 73664088 73664111 -48179745 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1147 21 0 0 0 chr11 73664460 73664481 -48179375 + AT_rich Low_complexity Low_complexity 1 21 0 1 1147 619 168 0 2 chr11 73665307 73665427 -48178429 + L1_Mm LINE L1 5262 5379 -507 1 1147 6005 50 0 6 chr11 73665432 73666163 -48177693 - L1_Mus1 LINE L1 0 6567 5841 1 1147 376 82 0 0 chr11 73666163 73666212 -48177644 + L1_Mm LINE L1 4372 4420 -1463 1 1147 914 287 33 71 chr11 73666212 73666580 -48177276 - RLTR20B3 LTR ERVK -203 374 21 1 1147 4271 189 83 4 chr11 73666584 73667536 -48176320 - MYSERV16_I-int LTR ERVK 0 2326 1300 1 1147 3752 155 79 1 chr11 73667565 73668225 -48175631 - Lx3C LINE L1 -10 6966 6256 1 1147 19158 83 4 7 chr11 73668225 73671944 -48171912 - L1Md_F LINE L1 -1874 4009 301 1 1147 242 268 0 0 chr11 73671942 73671998 -48171858 - L1Md_F LINE L1 -6190 329 274 2 1147 8662 132 10 6 chr11 73671987 73673540 -48170316 - L1_Mm LINE L1 -2721 3162 1604 2 1147 37658 28 0 6 chr11 73673535 73679518 -48164338 - L1Md_T LINE L1 0 6582 643 2 1147 2683 91 2 30 chr11 73679514 73680245 -48163611 - L1VL1 LINE L1 -2293 1405 696 2 1147 2855 19 0 0 chr11 73680245 73680567 -48163289 + RLTRETN_Mm LTR ERVK 1 322 0 2 1147 38333 35 5 8 chr11 73680567 73685428 -48158428 + MMETn-int LTR ERVK 1 4844 0 2 1147 2833 22 0 0 chr11 73685428 73685750 -48158106 + RLTRETN_Mm LTR ERVK 1 322 0 2 1147 3170 127 0 0 chr11 73685750 73686231 -48157625 - L1VL1 LINE L1 -5721 701 221 2 1147 5890 97 22 0 chr11 73686234 73687636 -48156220 - Lx3_Mus LINE L1 -474 6535 5101 2 1147 3425 68 9 7 chr11 73687680 73688121 -48155735 - L1_Mus1 LINE L1 0 6567 6126 2 1147 2691 189 129 16 chr11 73688141 73688336 -48155520 - ORR1A3-int LTR MaLR -923 1040 845 2 1147 2601 13 93 25 chr11 73688336 73688660 -48155196 + ORR1A0 LTR MaLR 1 346 0 2 1147 2691 189 129 16 chr11 73688660 73689193 -48154663 - ORR1A3-int LTR MaLR -1119 844 230 2 1147 1892 133 70 0 chr11 73689193 73689493 -48154363 + ORR1A4 LTR MaLR 1 321 -8 2 1147 243 248 281 9 chr11 73689712 73689731 -48154125 - MT2B LTR ERVL -19 456 438 2 1147 386 20 20 0 chr11 73689731 73689782 -48154074 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1147 1600 212 246 2 chr11 73689782 73690219 -48153637 - MT2B LTR ERVL -60 541 1 2 1147 4404 181 32 23 chr11 73690466 73691298 -48152558 + RMER21B LTR ERV1 1 840 -2 2 1147 537 16 0 0 chr11 73691433 73691495 -48152361 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1147 585 217 102 6 chr11 73691495 73691653 -48152203 - RCHARR1 DNA MER1_type -148 826 653 2 1147 207 0 0 0 chr11 73691662 73691685 -48152171 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1147 1136 65 0 0 chr11 73691685 73691823 -48152033 - B1_Mm SINE Alu -9 138 1 2 1147 192 77 0 0 chr11 73691828 73691854 -48152002 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1147 4323 59 0 2 chr11 73692014 73692556 -48151300 - L1Md_F2 LINE L1 -15 6567 6027 2 1147 16206 52 1 0 chr11 73692556 73694826 -48149030 + L1Md_F2 LINE L1 3741 6012 -570 2 1147 6022 153 16 3 chr11 73694824 73696024 -48147832 - Lx LINE L1 -15 6639 5420 2 1147 809 123 14 0 chr11 73696020 73696158 -48147698 - Lx LINE L1 -1219 4664 4525 2 1147 439 172 23 0 chr11 73696448 73696535 -48147321 + MurERV4_19-int LTR ERVK 994 1082 -4698 2 1147 690 176 52 0 chr11 73696537 73696673 -48147183 + MurERV4_19-int LTR ERVK 1927 2069 -3711 2 1147 403 223 0 28 chr11 73696661 73696767 -48147089 + MurERV4_19-int LTR ERVK 2201 2303 -3477 2 1147 579 363 21 14 chr11 73696801 73697083 -48146773 + B4 SINE B4 5 288 -4 2 1147 1104 300 41 12 chr11 73697312 73697905 -48145951 + Lx5 LINE L1 6500 6897 -563 2 1147 1619 247 81 11 chr11 73697906 73698185 -48145671 - RMER19C LTR ERVK 0 611 332 2 1147 324 0 0 0 chr11 73698185 73698221 -48145635 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1147 1619 247 81 11 chr11 73698221 73698384 -48145472 - RMER19C LTR ERVK -280 331 139 2 1147 1100 167 33 48 chr11 73698426 73698908 -48144948 - MurERV4_19-int LTR ERVK -4 5776 5187 2 1147 337 178 14 14 chr11 73698966 73699040 -48144816 + MurERV4_19-int LTR ERVK 2284 2357 -3423 2 1147 23 54 0 0 chr11 73699222 73699259 -48144597 + AT_rich Low_complexity Low_complexity 1 37 0 2 1147 243 0 0 0 chr11 73699291 73699318 -48144538 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1147 2687 94 39 5 chr11 73699477 73699860 -48143996 + MTB LTR MaLR 3 398 -2 2 1147 429 20 0 0 chr11 73699893 73699943 -48143913 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1147 1074 92 0 0 chr11 73701876 73702028 -48141828 + (TTCTCC)n Simple_repeat Simple_repeat 6 157 0 2 1147 770 112 0 0 chr11 73704453 73704560 -48139296 + BGLII LTR ERVK 315 421 0 2 1147 760 205 212 59 chr11 73704969 73705327 -48138529 + RMER3D-int LTR ERVK 489 901 -1941 2 1147 220 27 26 26 chr11 73705328 73705366 -48138490 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1147 1158 70 0 0 chr11 73705369 73705511 -48138345 - B1_Mus1 SINE Alu -6 142 1 2 1147 1099 62 11 38 chr11 73705539 73705724 -48138132 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 1147 570 114 0 0 chr11 73705735 73705823 -48138033 + (GGAAA)n Simple_repeat Simple_repeat 3 90 0 2 1147 2567 174 86 71 chr11 73705853 73706540 -48137316 + RMER3D-int LTR ERVK 469 1694 -1148 2 1147 2512 211 78 57 chr11 73706541 73707389 -48136467 + RMER3D-int LTR ERVK 1925 2795 -47 2 1147 1669 167 67 87 chr11 73707389 73707790 -48136066 - RLTR9C LTR ERVK 0 393 1 2 1147 2512 211 78 57 chr11 73707790 73707835 -48136021 + RMER3D-int LTR ERVK 2796 2837 -5 2 1147 2980 101 7 0 chr11 73707842 73708260 -48135596 + BGLII LTR ERVK 1 421 0 2 1147 5490 141 46 6 chr11 73709455 73710417 -48133439 - Lx LINE L1 -2 6652 5653 2 1147 6683 120 39 1 chr11 73710639 73712038 -48131818 - Lx LINE L1 0 6654 5195 2 1147 1076 293 22 46 chr11 73712039 73712432 -48131424 - RMER19C LTR ERVK -34 577 142 2 1147 1051 212 38 110 chr11 73712439 73712731 -48131125 - RMER19C LTR ERVK -340 271 1 2 1147 21 57 0 0 chr11 73713006 73713041 -48130815 + AT_rich Low_complexity Low_complexity 1 35 0 2 1147 637 274 82 12 chr11 73713317 73713487 -48130369 + B3 SINE B2 1 182 -34 2 1147 245 320 0 0 chr11 73713545 73713623 -48130233 - Lx9 LINE L1 -722 6922 6845 2 1147 6142 171 53 18 chr11 73713909 73716072 -48127784 + Lx2B LINE L1 4711 6964 -36 2 1147 203 125 0 24 chr11 73716534 73716575 -48127281 + (AGGGGG)n Simple_repeat Simple_repeat 2 41 0 2 1147 4606 134 18 21 chr11 73716588 73717381 -48126475 - RMER12 LTR ERVK -532 790 1 2 1147 348 241 43 8 chr11 73717437 73717554 -48126302 - Lx8 LINE L1 -482 6991 6871 2 1147 299 228 0 25 chr11 73717693 73717774 -48126082 - L1M5 LINE L1 -336 5843 5765 2 1147 276 200 0 62 chr11 73717964 73718028 -48125828 - B1F SINE Alu -17 132 73 2 1147 380 314 29 0 chr11 73718096 73718198 -48125658 - PB1D7 SINE Alu -15 105 1 2 1147 572 67 11 0 chr11 73718749 73718839 -48125017 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1147 259 286 91 97 chr11 73721907 73722093 -48121763 + MLT2D LTR ERVL 52 236 -178 2 1147 327 269 19 0 chr11 73723190 73723294 -48120562 - L1MC LINE L1 -2752 3394 3289 2 1147 7215 130 3 8 chr11 73723344 73725253 -48118603 - L1_Mus3 LINE L1 -8 6630 4732 2 1147 311 42 0 40 chr11 73725292 73725342 -48118514 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2 1147 1119 64 0 0 chr11 73725344 73725485 -48118371 - B1_Mm SINE Alu -6 141 1 2 1147 16887 71 3 2 chr11 73725493 73728403 -48115453 - L1Md_F2 LINE L1 -10 6572 3659 2 1147 661 113 0 0 chr11 73728405 73728502 -48115354 + L1Md_F LINE L1 378 474 -6142 2 1147 3579 140 11 5 chr11 73728498 73729124 -48114732 + L1Md_F LINE L1 4110 4739 -1144 2 1147 3369 146 12 55 chr11 73729122 73730298 -48113558 - L1VL4 LINE L1 -2240 1319 204 2 1147 288 285 83 31 chr11 73730329 73730655 -48113201 - L1MC LINE L1 -2887 3259 2917 2 1147 1268 224 56 119 chr11 73730738 73731148 -48112708 + ORR1B1 LTR MaLR 3 386 -8 2 1147 229 259 47 47 chr11 73731355 73731440 -48112416 - Tigger7 DNA MER2_type -290 2201 2117 2 1147 399 21 0 0 chr11 73731768 73731816 -48112040 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 2 1147 318 336 55 28 chr11 73731958 73732175 -48111681 + L1M5 LINE L1 4437 4659 -1487 2 1147 295 268 122 0 chr11 73732219 73732342 -48111514 - Lx7 LINE L1 0 7696 7559 2 1147 3077 107 19 0 chr11 73732358 73732787 -48111069 + L1_Mus4 LINE L1 6096 6532 -104 2 1147 1658 249 72 18 chr11 73732767 73733107 -48110749 + Lx7 LINE L1 6891 7251 -445 2 1147 252 0 0 0 chr11 73733107 73733135 -48110721 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1147 1658 249 72 18 chr11 73733135 73733292 -48110564 + Lx7 LINE L1 7252 7414 -282 2 1147 1734 137 10 17 chr11 73733366 73733655 -48110201 - L1_Mus4 LINE L1 0 6636 6350 2 1147 875 80 28 42 chr11 73733656 73733800 -48110056 + MT2B2 LTR ERVL 443 584 0 2 1147 2402 256 38 18 chr11 73733800 73734353 -48109503 + Lx6 LINE L1 6713 7276 -184 2 1147 1172 276 27 20 chr11 73734335 73734634 -48109222 - Lx7 LINE L1 -1029 6667 6367 2 1147 445 289 8 0 chr11 73734632 73734753 -48109103 + Lx7 LINE L1 6261 6382 -1314 2 1147 4492 145 17 40 chr11 73735148 73736794 -48107062 + Lx2 LINE L1 5141 6653 -1 2 1147 397 90 30 0 chr11 73736838 73736905 -48106951 + (GGA)n Simple_repeat Simple_repeat 2 70 0 2 1147 458 79 13 0 chr11 73737044 73737120 -48106736 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1147 297 75 0 0 chr11 73737169 73737209 -48106647 + (ATG)n Simple_repeat Simple_repeat 1 40 0 2 1147 348 354 43 50 chr11 73739526 73739803 -48104053 - MLT2D LTR ERVL -34 363 89 2 1147 189 107 0 0 chr11 73742549 73742577 -48101279 + (CTG)n Simple_repeat Simple_repeat 3 30 0 2 1147 418 276 243 0 chr11 73742636 73742821 -48101035 + RMER4B LTR ERVK 345 574 -11 2 1147 247 221 43 14 chr11 73743846 73743915 -48099941 + ORR1D2 LTR MaLR 298 368 -2 2 1147 1758 286 34 36 chr11 73743918 73744596 -48099260 + ORR1D2-int LTR MaLR 3 679 -901 2 1147 1202 284 96 42 chr11 73744596 73745403 -48098453 + ORR1D2-int LTR MaLR 1 1562 -18 2 1147 1138 249 70 58 chr11 73745403 73745817 -48098039 + Lx9 LINE L1 7017 7435 -209 2 1147 225 0 0 0 chr11 73745837 73745862 -48097994 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1147 327 49 0 0 chr11 73745867 73745908 -48097948 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1147 315 299 51 41 chr11 73746041 73746236 -48097620 + L1M3 LINE L1 5552 5748 -441 2 1147 396 0 0 0 chr11 73746283 73746327 -48097529 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1147 189 154 0 0 chr11 73746406 73746445 -48097411 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 2 1147 378 74 0 0 chr11 73746633 73746687 -48097169 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2 1147 188 135 27 0 chr11 73746708 73746745 -48097111 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1147 282 29 0 0 chr11 73746753 73746788 -48097068 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 2 1147 419 72 72 0 chr11 73747092 73747175 -48096681 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 2 1147 22 80 0 0 chr11 73747207 73747257 -48096599 + AT_rich Low_complexity Low_complexity 1 50 0 2 1147 220 122 0 119 chr11 73747333 73747417 -48096439 + A-rich Low_complexity Low_complexity 5 78 0 2 1147 705 322 69 5 chr11 73747419 73748015 -48095841 + L1_Mur3 LINE L1 1282 1915 -3965 2 1147 1108 56 21 0 chr11 73748025 73748168 -48095688 + B1_Mm SINE Alu 2 147 0 2 1147 861 164 0 0 chr11 73748168 73748327 -48095529 + GA-rich Low_complexity Low_complexity 4 162 0 2 1147 331 309 13 7 chr11 73748531 73748681 -48095175 + L1_Mur3 LINE L1 2126 2276 -3604 2 1147 4437 87 29 8 chr11 73748844 73749540 -48094316 + Lx3A LINE L1 5235 5939 -1042 2 1147 431 315 83 75 chr11 73749541 73749819 -48094037 - RLTR9A LTR ERVK 0 368 89 2 1147 21 0 0 0 chr11 73750513 73750534 -48093322 + AT_rich Low_complexity Low_complexity 1 21 0 2 1147 3861 62 2 0 chr11 73750662 73751145 -48092711 + L1_Mus1 LINE L1 6084 6567 0 2 1147 378 348 59 51 chr11 73751761 73751997 -48091859 - MLT2D LTR ERVL -74 340 103 2 1147 230 245 63 117 chr11 73753234 73753345 -48090511 - MER50 LTR ERV1 -30 704 600 3 1147 225 252 0 0 chr11 73754792 73754895 -48088961 + (CTG)n Simple_repeat Simple_repeat 2 104 0 3 1147 493 247 175 0 chr11 73754908 73755074 -48088782 + RMER4B LTR ERVK 257 451 -134 3 1147 810 258 46 11 chr11 73755202 73755469 -48088387 + ORR1D2-int LTR MaLR 1123 1546 -34 3 1147 492 311 93 6 chr11 73755473 73755635 -48088221 + ORR1D2 LTR MaLR 32 207 -163 3 1147 1332 229 83 55 chr11 73755635 73756069 -48087787 + Lx9 LINE L1 7017 7462 -182 3 1147 259 312 27 54 chr11 73756182 73756368 -48087488 + L1M2 LINE L1 5558 5738 -553 3 1147 243 257 0 28 chr11 73756637 73756709 -48087147 + (TCTCTG)n Simple_repeat Simple_repeat 3 72 0 3 1147 524 293 49 34 chr11 73756943 73757368 -48086488 + L1_Mur3 LINE L1 1244 1676 -4210 3 1147 1952 88 35 0 chr11 73757365 73757649 -48086207 - L1_Mus3 LINE L1 -573 6065 5772 3 1147 4038 78 11 2 chr11 73757649 73758199 -48085657 + L1_Mus3 LINE L1 6078 6632 -6 3 1147 514 341 82 27 chr11 73758212 73758761 -48085095 + L1_Rod LINE L1 1720 2298 -3549 3 1147 3550 228 35 13 chr11 73758865 73759693 -48084163 - Lx7 LINE L1 -241 7455 6610 3 1147 2879 81 97 2 chr11 73759694 73760128 -48083728 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1147 14125 51 12 3 chr11 73760130 73761887 -48081969 - IAPEz-int LTR ERVK -2 6479 4708 3 1147 1856 84 16 0 chr11 73761914 73762164 -48081692 - IAPEz-int LTR ERVK -5183 2497 2244 3 1147 939 59 0 0 chr11 73762159 73762278 -48081578 - IAPEz-int LTR ERVK -5004 1477 1359 3 1147 3637 100 30 70 chr11 73762278 73763115 -48080741 - IAPEz-int LTR ERVK -5819 662 9 3 1147 2882 86 97 0 chr11 73763116 73763549 -48080307 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1147 825 281 34 0 chr11 73763553 73763791 -48080065 - Lx7 LINE L1 -1084 6612 6367 3 1147 481 259 26 0 chr11 73763789 73763905 -48079951 + Lx7 LINE L1 6261 6379 -1317 3 1147 27 49 0 0 chr11 73764250 73764291 -48079565 + AT_rich Low_complexity Low_complexity 1 41 0 3 1147 22 35 0 0 chr11 73764504 73764533 -48079323 + AT_rich Low_complexity Low_complexity 1 29 0 3 1147 23 0 0 0 chr11 73765909 73765932 -48077924 + AT_rich Low_complexity Low_complexity 1 23 0 3 1147 347 388 30 11 chr11 73766128 73766394 -48077462 - MLT2D LTR ERVL -46 368 98 3 1147 182 234 121 50 chr11 73767817 73767916 -48075940 + L3 LINE CR1 708 813 -3676 3 1147 207 0 0 0 chr11 73769220 73769243 -48074613 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1147 330 236 1 84 chr11 73769477 73769602 -48074254 - Lx4B LINE L1 0 7058 6887 3 1147 2280 192 73 0 chr11 73769599 73770145 -48073711 + L1_Mur1 LINE L1 2991 3576 -2310 3 1147 3971 185 55 25 chr11 73770445 73771260 -48072596 + RMER21B LTR ERV1 3 842 0 3 1147 913 336 48 61 chr11 73771308 73771701 -48072155 + MTE-int LTR MaLR 790 1177 -403 3 1147 789 195 46 6 chr11 73771701 73771876 -48071980 + Lx9 LINE L1 7303 7484 -160 3 1147 29 70 0 0 chr11 73772110 73772167 -48071689 + AT_rich Low_complexity Low_complexity 1 57 0 3 1147 1036 0 8 8 chr11 73772190 73772315 -48071541 + (TAGA)n Simple_repeat Simple_repeat 1 125 0 3 1147 1067 88 0 0 chr11 73772315 73772451 -48071405 - B1_Mus1 SINE Alu -10 138 3 3 1147 359 221 62 8 chr11 73773267 73773395 -48070461 + Lx9 LINE L1 7507 7641 -3 3 1147 212 280 67 48 chr11 73773560 73773665 -48070191 + MIRm SINE MIR 157 263 -13 3 1147 246 143 0 0 chr11 73773774 73773823 -48070033 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1147 351 113 0 0 chr11 73773824 73773886 -48069970 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1147 726 294 63 15 chr11 73775280 73775549 -48068307 - B4A SINE B4 -9 283 2 3 1147 868 236 75 5 chr11 73775629 73775829 -48068027 + B3 SINE B2 2 215 -1 3 1147 246 306 149 26 chr11 73776427 73776541 -48067315 - MamGypLTR1d LTR Gypsy -631 182 55 3 1147 240 325 0 36 chr11 73777276 73777359 -48066497 - ID4_ SINE ID 0 83 4 3 1147 1073 263 133 52 chr11 73777360 73777729 -48066127 + MTB_Mm LTR MaLR 1 399 -8 3 1147 356 294 12 22 chr11 73777740 73777872 -48065984 - PB1D10 SINE Alu 0 148 17 3 1147 1962 117 122 23 chr11 73779898 73780283 -48063573 - Lx LINE L1 -1 6653 6231 3 1147 351 305 66 25 chr11 73780645 73780766 -48063090 - PB1 SINE Alu 0 127 2 3 1147 6591 84 16 31 chr11 73781604 73782570 -48061286 - Lx3_Mus LINE L1 0 7009 6059 3 1147 278 243 0 13 chr11 73782652 73782727 -48061129 + Lx7 LINE L1 7257 7330 -366 3 1147 186 43 0 0 chr11 73782892 73782915 -48060941 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 3 1147 2637 156 7 0 chr11 73783065 73783712 -48060144 + L1VL4 LINE L1 495 1147 -2412 3 1147 29545 98 20 6 chr11 73783711 73788348 -48055508 + L1Md_F2 LINE L1 271 4938 -945 3 1147 4056 85 0 9 chr11 73788348 73788896 -48054960 - L1Md_F2 LINE L1 -12 6570 6028 3 1147 29545 83 9 5 chr11 73788896 73789544 -48054312 + L1Md_F2 LINE L1 4939 5586 -297 3 1147 7003 89 3 37 chr11 73789545 73790555 -48053301 + L1Md_F2 LINE L1 5588 6563 -19 3 1147 9845 157 20 5 chr11 73790560 73792660 -48051196 + Lx2B LINE L1 3916 6049 -951 3 1147 736 295 58 18 chr11 73792660 73793011 -48050845 + RLTR20D LTR ERVK 163 541 0 3 1147 994 142 16 16 chr11 73793018 73793211 -48050645 + Lx2B LINE L1 6806 6998 -2 3 1147 353 190 25 0 chr11 73793231 73793310 -48050546 + Lx7 LINE L1 7616 7696 0 3 143 645 247 128 0 chr11 73793348 73793599 -48050257 + Lx9 LINE L1 7357 7639 -5 3 1148 21 57 0 0 chr11 73793969 73794004 -48049852 + AT_rich Low_complexity Low_complexity 1 35 0 3 1148 638 285 7 0 chr11 73794210 73794347 -48049509 + RSINE1 SINE B4 3 140 -25 3 1148 1134 68 7 0 chr11 73795930 73796076 -48047780 - B1_Mus1 SINE Alu 0 148 2 3 1148 3982 46 18 6 chr11 73796331 73796835 -48047021 + L1Md_F2 LINE L1 6073 6582 0 3 1148 217 0 0 57 chr11 73796838 73796873 -48046983 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1148 180 194 0 0 chr11 73799417 73799448 -48044408 - MIRm SINE MIR -18 258 228 3 1148 317 203 0 17 chr11 73799475 73799535 -48044321 - PB1 SINE Alu -8 119 61 3 1148 189 286 71 0 chr11 73799579 73799635 -48044221 + MIRb SINE MIR 14 73 -195 3 1148 409 216 0 13 chr11 73801458 73801533 -48042323 + PB1 SINE Alu 46 119 -8 3 1148 180 194 0 0 chr11 73801560 73801591 -48042265 + MIRm SINE MIR 228 258 -18 3 1148 232 329 25 0 chr11 73803896 73803975 -48039881 + MIR3 SINE MIR 87 167 -41 3 1148 1013 286 7 4 chr11 73804215 73804492 -48039364 - Lx9 LINE L1 -621 7023 6746 3 1148 661 298 31 12 chr11 73804686 73804846 -48039010 + B3A SINE B2 1 163 -35 3 1148 1093 103 0 17 chr11 73804846 73805023 -48038833 + (TTC)n Simple_repeat Simple_repeat 3 176 0 3 1148 411 103 62 0 chr11 73805025 73805122 -48038734 + CT-rich Low_complexity Low_complexity 2 104 0 3 1148 1107 102 0 0 chr11 73805549 73805696 -48038160 + B1_Mus1 SINE Alu 2 148 0 3 1148 264 185 0 0 chr11 73805697 73805751 -48038105 + A-rich Low_complexity Low_complexity 1 54 0 3 1148 244 289 35 21 chr11 73805751 73805896 -48037960 + HAL1 LINE L1 2239 2385 -122 3 1148 701 255 122 5 chr11 73806725 73806914 -48036942 - B3 SINE B2 -5 211 1 3 1148 1113 190 0 17 chr11 73807053 73807288 -48036568 + L1Md_F LINE L1 7 237 -6282 3 1148 19157 53 2 2 chr11 73807288 73809842 -48034014 + L1Md_F2 LINE L1 3033 5585 -298 3 1148 7929 57 1 0 chr11 73809843 73810827 -48033029 + L1Md_F2 LINE L1 5587 6571 -11 3 1148 21 0 0 0 chr11 73811012 73811033 -48032823 + AT_rich Low_complexity Low_complexity 1 21 0 3 1148 302 280 48 102 chr11 73811166 73811289 -48032567 - L1MD LINE L1 -2947 3199 3081 3 1148 1188 54 0 0 chr11 73811289 73811436 -48032420 - B1_Mus2 SINE Alu 0 147 1 3 1148 302 280 48 102 chr11 73811436 73811459 -48032397 - L1MD LINE L1 -3066 3080 3061 3 1148 33074 86 6 5 chr11 73811662 73817791 -48026065 - L1Md_F2 LINE L1 0 6582 446 3 1148 360 0 0 0 chr11 73817970 73818010 -48025846 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1148 968 281 52 39 chr11 73818065 73818517 -48025339 - L1MA6 LINE L1 -369 5931 5446 3 1148 279 0 0 0 chr11 73818517 73818548 -48025308 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1148 913 315 97 33 chr11 73818548 73818565 -48025291 - L1MA6 LINE L1 -435 5445 5428 3 1148 1768 192 41 3 chr11 73818565 73818930 -48024926 - Lx LINE L1 -13 6641 6263 3 1148 913 311 75 30 chr11 73818930 73819385 -48024471 - L1MA6 LINE L1 -453 5427 4931 3 1148 29621 24 1 3 chr11 73819385 73823090 -48020766 + L1Md_T LINE L1 1892 5586 -297 3 1148 8371 37 0 0 chr11 73823090 73824085 -48019771 + L1Md_T LINE L1 5587 6581 -1 3 1148 504 271 5 36 chr11 73824089 73824284 -48019572 - L1M2 LINE L1 -1188 4955 4767 3 1148 400 264 66 0 chr11 73824547 73824638 -48019218 - ORR1E LTR MaLR -262 97 1 3 1148 183 129 0 0 chr11 73824814 73824845 -48019011 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 3 1148 293 209 0 21 chr11 73824870 73824963 -48018893 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 3 1148 1212 280 24 39 chr11 73825004 73825342 -48018514 + MTEb LTR MaLR 41 373 -6 3 1148 1002 40 79 0 chr11 73825492 73825618 -48018238 - B1_Mus1 SINE Alu -12 136 1 3 1148 267 73 0 0 chr11 73826037 73826078 -48017778 - Lx LINE L1 -353 6301 6261 3 1148 2528 88 3 14 chr11 73826082 73826437 -48017419 + Lx LINE L1 6297 6647 -7 3 1148 23 33 0 0 chr11 73826438 73826468 -48017388 + AT_rich Low_complexity Low_complexity 1 30 0 3 1148 320 342 60 17 chr11 73826706 73826822 -48017034 - RMER20B LTR ERVK -25 602 482 3 1148 517 316 92 51 chr11 73827035 73827345 -48016511 - RMER20B LTR ERVK -111 516 169 3 1148 2627 323 57 18 chr11 73828083 73829393 -48014463 - Lx8 LINE L1 -2 7471 6111 3 1148 2124 222 47 66 chr11 73829515 73830242 -48013614 + RMER17A LTR ERVK 39 751 0 3 1148 2975 122 8 2 chr11 73830242 73830728 -48013128 - L1_Mm LINE L1 -1074 4809 4321 3 1148 2671 286 75 25 chr11 73830731 73831451 -48012405 - L1_Mur3 LINE L1 -901 5242 4527 3 1148 1210 263 73 6 chr11 73831451 73831795 -48012061 + ORR1D2 LTR MaLR 1 367 -3 3 1148 2671 283 81 19 chr11 73831795 73832869 -48010987 - L1_Mur3 LINE L1 -1586 4557 3389 3 1148 515 314 66 53 chr11 73832880 73833273 -48010583 - L1_Rod LINE L1 -3487 2360 1963 3 1148 1397 257 5 24 chr11 73833319 73833697 -48010159 - Lx6 LINE L1 -26 7434 7064 3 1148 36237 48 3 6 chr11 73833697 73839666 -48004190 - L1Md_F2 LINE L1 -12 6570 631 3 1148 808 294 110 28 chr11 73839672 73840351 -48003505 - Lx6 LINE L1 -572 6888 5960 3 1148 470 265 23 8 chr11 73840494 73840627 -48003229 - Lx9 LINE L1 -453 7191 7057 3 1148 1602 273 51 44 chr11 73841413 73842259 -48001597 + L1M2 LINE L1 4254 5105 -1038 3 1148 1166 98 76 0 chr11 73842902 73843086 -48000770 - L1Md_F2 LINE L1 0 6582 6385 3 1148 3363 55 0 2 chr11 73843388 73843826 -48000030 + L1Md_F2 LINE L1 5150 5586 -297 4 1148 8052 47 1 4 chr11 73843827 73844813 -47999043 + L1Md_F2 LINE L1 5588 6570 -12 4 1148 35 24 0 0 chr11 73844893 73844935 -47998921 + AT_rich Low_complexity Low_complexity 1 42 0 4 1148 6511 131 25 14 chr11 73844950 73845982 -47997874 - Lx3B LINE L1 -6 6967 5924 4 1148 560 304 0 0 chr11 73846223 73846358 -47997498 + B1_Mur1 SINE Alu 15 149 0 4 1148 1277 267 35 11 chr11 73846502 73846869 -47996987 + Lx7 LINE L1 6925 7300 -396 4 1148 351 0 0 0 chr11 73846874 73846913 -47996943 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1148 281 246 16 27 chr11 73846917 73847027 -47996829 + T-rich Low_complexity Low_complexity 1 108 0 4 1148 8047 39 6 6 chr11 73847106 73848100 -47995756 + L1Md_F3 LINE L1 5588 6581 -3 4 1148 479 278 122 27 chr11 73848700 73848848 -47995008 + RSINE1 SINE B4 4 165 0 4 1148 242 242 0 0 chr11 73849194 73849256 -47994600 + L1MA5A LINE L1 5870 5931 -366 4 1148 216 370 63 13 chr11 73850341 73850500 -47993356 - MIRb SINE MIR -73 195 29 4 1148 741 292 89 51 chr11 73851803 73852117 -47991739 + Lx8 LINE L1 6498 6823 -650 4 1148 959 298 76 7 chr11 73852125 73852429 -47991427 + Lx8 LINE L1 6991 7315 -158 4 1148 513 154 0 0 chr11 73852441 73852532 -47991324 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 1148 21 36 0 0 chr11 73852662 73852690 -47991166 + AT_rich Low_complexity Low_complexity 1 28 0 4 1148 522 254 72 61 chr11 73852820 73852868 -47990988 + Lx9 LINE L1 7166 7212 -432 4 1148 1235 35 73 89 chr11 73852868 73853059 -47990797 - B2_Mm1a SINE B2 -5 188 1 4 1148 522 249 255 36 chr11 73853059 73853289 -47990567 + Lx9 LINE L1 7213 7495 -149 4 1148 684 271 13 7 chr11 73853432 73853584 -47990272 + RSINE1 SINE B4 12 164 -1 4 1148 243 0 0 0 chr11 73853585 73853612 -47990244 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1148 979 266 14 19 chr11 73854351 73854562 -47989294 - B3 SINE B2 -6 210 1 4 1148 603 257 33 22 chr11 73854569 73854752 -47989104 - Lx8 LINE L1 -699 6774 6590 4 1148 371 236 52 43 chr11 73854752 73854867 -47988989 + Lx7 LINE L1 7036 7151 -545 4 1148 238 228 130 75 chr11 73854969 73855130 -47988726 + Lx8 LINE L1 7304 7473 0 4 1148 258 20 0 93 chr11 73855272 73855326 -47988530 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 4 1148 718 94 256 0 chr11 73855326 73855443 -47988413 - B1_Mus1 SINE Alu 0 148 2 4 1148 2819 72 8 3 chr11 73855472 73855847 -47988009 - L1_Mus2 LINE L1 -2 6564 6188 4 1148 6193 138 49 25 chr11 73855847 73857434 -47986422 + Lx2 LINE L1 5365 6995 -2 4 1148 36 0 0 0 chr11 73857435 73857471 -47986385 + AT_rich Low_complexity Low_complexity 1 36 0 4 1148 347 333 0 44 chr11 73858993 73859128 -47984728 + MamRep38 DNA hAT 166 294 -1 4 1148 193 338 109 14 chr11 73859705 73859843 -47984013 - L2 LINE L2 -808 2611 2461 4 1148 292 269 55 9 chr11 73861287 73861396 -47982460 - L1ME1 LINE L1 -163 6016 5903 4 1148 474 18 0 0 chr11 73861408 73861463 -47982393 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1148 665 331 55 59 chr11 73861509 73861782 -47982074 - B4 SINE B4 -20 272 1 4 1148 371 271 161 35 chr11 73861955 73862154 -47981702 - MER44A DNA MER2_type -104 235 12 4 1148 408 254 39 22 chr11 73862254 73862435 -47981421 - L1ME1 LINE L1 -416 5763 5580 4 1148 910 275 42 42 chr11 73862435 73862720 -47981136 + B4A SINE B4 3 287 -5 4 1148 231 133 0 0 chr11 73862835 73862880 -47980976 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1148 1367 242 69 3 chr11 73862881 73863242 -47980614 + Lx9 LINE L1 6622 7006 -638 4 1148 333 0 0 0 chr11 73863523 73863560 -47980296 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 4 1148 283 176 0 19 chr11 73864094 73864146 -47979710 + B1_Mur1 SINE Alu 99 149 0 4 1148 528 306 47 40 chr11 73864158 73864308 -47979548 + RSINE1 SINE B4 3 153 -12 4 1148 327 49 0 0 chr11 73864311 73864352 -47979504 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 1148 495 275 98 98 chr11 73864841 73865107 -47978749 - ORR1E LTR MaLR -55 304 39 4 1148 232 364 83 38 chr11 73865192 73865237 -47978619 + B4 SINE B4 43 94 -198 4 1148 485 294 32 0 chr11 73865237 73865363 -47978493 + B1F1 SINE Alu 2 131 -18 4 1148 22 0 0 0 chr11 73865854 73865876 -47977980 + AT_rich Low_complexity Low_complexity 1 22 0 4 1148 366 61 0 0 chr11 73865935 73865984 -47977872 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 4 1148 291 269 26 0 chr11 73865988 73866066 -47977790 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 4 1148 410 371 93 7 chr11 73866066 73866335 -47977521 - B4A SINE B4 0 292 1 4 1148 407 278 39 21 chr11 73866977 73867158 -47976698 + MIR SINE MIR 41 228 -34 4 1148 857 290 66 7 chr11 73868692 73868966 -47974890 - MER2 DNA MER2_type -7 338 49 4 1148 378 0 0 0 chr11 73870471 73870513 -47973343 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1148 250 275 33 0 chr11 73870597 73870688 -47973168 - L1M2 LINE L1 -424 5867 5774 4 1148 8187 153 19 8 chr11 73871287 73873764 -47970092 - L1_Mus3 LINE L1 -6 6632 4126 4 1148 3299 64 31 2 chr11 73873764 73874188 -47969668 + RLTR10C LTR ERVK 1 436 0 4 1148 8187 185 22 10 chr11 73874188 73874228 -47969628 - L1_Mus3 LINE L1 -1752 4125 4090 4 1148 405 328 11 22 chr11 73874230 73874408 -47969448 - Lx7 LINE L1 -1387 6073 5898 4 1148 6948 151 19 54 chr11 73874413 73876463 -47967393 + L1VL4 LINE L1 438 2393 -1424 4 1148 3878 124 37 3 chr11 73876463 73877092 -47966764 + L1_Mus3 LINE L1 5984 6633 -5 4 1148 772 168 28 49 chr11 73877120 73877336 -47966520 - Lx7 LINE L1 -1789 5907 5689 4 1148 40 0 0 0 chr11 73877392 73877432 -47966424 + AT_rich Low_complexity Low_complexity 1 40 0 4 1148 432 170 0 0 chr11 73877432 73877524 -47966332 - L1_Mur2 LINE L1 -2979 2907 2807 4 1148 1312 29 55 44 chr11 73877526 73877731 -47966125 - L1Md_F2 LINE L1 0 6582 6382 4 1148 40 37 0 0 chr11 73877782 73877836 -47966020 + AT_rich Low_complexity Low_complexity 1 54 0 4 1148 3687 79 7 34 chr11 73878066 73878159 -47965697 - Lx3_Mus LINE L1 -877 6132 6042 4 1148 4413 142 7 69 chr11 73878159 73879105 -47964751 - RMER17D LTR ERVK 0 889 2 4 1148 4882 81 5 65 chr11 73879105 73879796 -47964060 - Lx3_Mus LINE L1 -968 6041 5373 4 1148 663 87 0 17 chr11 73879796 73879913 -47963943 - L1_Mus4 LINE L1 -2 6634 6520 4 1148 4882 84 1 129 chr11 73879913 73880286 -47963570 - Lx3_Mus LINE L1 -514 5372 5102 4 1148 5565 79 4 3 chr11 73880286 73881063 -47962793 + Lx3_Mus LINE L1 6126 6903 -106 4 1148 403 318 42 70 chr11 73881636 73881849 -47962007 - RLTR25B LTR ERVK -821 207 1 4 1148 383 127 14 0 chr11 73881849 73881920 -47961936 - L1_Mur2 LINE L1 -4411 1466 1395 4 1148 1269 212 219 54 chr11 73881927 73882410 -47961446 + RMER2 LTR ERV1 1 563 -4 4 1148 35 54 0 0 chr11 73884062 73884118 -47959738 + AT_rich Low_complexity Low_complexity 1 56 0 4 1148 890 200 39 61 chr11 73884165 73884394 -47959462 - URR1B DNA MER1_type 0 225 2 4 1148 322 304 14 14 chr11 73884564 73884704 -47959152 + MurSatRep1 Unknown Unknown 606 745 -1392 4 1148 648 0 0 0 chr11 73885636 73885708 -47958148 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 1148 917 271 60 70 chr11 73885868 73886170 -47957686 + MTD LTR MaLR 68 366 -53 4 1148 1075 339 70 28 chr11 73886226 73887199 -47956657 - Lx7 LINE L1 -545 7151 6138 4 1148 243 234 38 25 chr11 73887584 73887663 -47956193 - Lx LINE L1 -776 5878 5799 4 1148 374 325 24 0 chr11 73887716 73887925 -47955931 + L1_Mur3 LINE L1 3385 3598 -2282 4 1148 465 133 0 0 chr11 73887925 73888000 -47955856 + (TCC)n Simple_repeat Simple_repeat 2 76 0 4 1148 1341 166 44 63 chr11 73888000 73888316 -47955540 - Lx LINE L1 -4 6650 6341 4 1148 963 170 0 0 chr11 73888311 73888470 -47955386 + Lx LINE L1 6211 6369 -285 4 1148 996 92 0 14 chr11 73888498 73888641 -47955215 + B1_Mus2 SINE Alu 7 147 0 4 1148 973 271 73 27 chr11 73888692 73888749 -47955107 + L1_Mur3 LINE L1 3675 3727 -2153 4 1148 4399 120 128 29 chr11 73888749 73889556 -47954300 + RMER17D LTR ERVK 1 887 -2 4 1148 973 271 73 27 chr11 73889556 73889976 -47953880 + L1_Mur3 LINE L1 3728 4174 -1706 4 1148 26 50 0 0 chr11 73890102 73890142 -47953714 + AT_rich Low_complexity Low_complexity 1 40 0 4 1148 224 172 17 0 chr11 73890387 73890445 -47953411 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1148 823 212 45 18 chr11 73890629 73890892 -47952964 - L1_Mur2 LINE L1 -1459 4427 4145 4 1148 192 77 0 0 chr11 73890892 73890918 -47952938 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1148 383 165 0 12 chr11 73891018 73891104 -47952752 + CT-rich Low_complexity Low_complexity 2 86 0 4 1148 24 67 0 0 chr11 73891771 73891816 -47952040 + AT_rich Low_complexity Low_complexity 1 45 0 4 1148 2255 223 66 4 chr11 73891835 73892263 -47951593 - Lx3C LINE L1 -46 6930 6469 4 1148 1377 0 0 0 chr11 73892263 73892416 -47951440 + (GGGAGA)n Simple_repeat Simple_repeat 6 158 0 4 1148 2255 223 66 4 chr11 73892416 73892531 -47951325 - Lx3C LINE L1 -508 6468 6353 4 1148 5059 192 65 3 chr11 73892543 73893186 -47950670 - L1_Mur2 LINE L1 -1719 4158 3483 4 1148 218 56 28 0 chr11 73893186 73893222 -47950634 + (TTG)n Simple_repeat Simple_repeat 3 39 0 4 1148 5059 192 65 3 chr11 73893222 73893835 -47950021 - L1_Mur2 LINE L1 -2395 3482 2826 4 1148 795 140 77 0 chr11 73893836 73893979 -47949877 - L1Md_F2 LINE L1 -12 6570 6417 4 1148 2574 137 7 2 chr11 73893979 73894397 -47949459 + Lx3_Mus LINE L1 6582 7001 -8 4 1148 232 218 101 13 chr11 73894428 73894507 -47949349 + RLTR25A LTR ERVK 909 994 -109 4 1148 403 144 30 40 chr11 73894578 73894679 -47949177 - L1_Rod LINE L1 -729 5118 5019 4 1148 248 217 36 0 chr11 73894679 73894762 -47949094 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 4 1148 474 157 0 0 chr11 73894767 73894850 -47949006 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1148 9867 61 1 0 chr11 73894893 73896232 -47947624 - L1_Mm LINE L1 -1034 4849 3509 4 1148 623 226 27 29 chr11 73897814 73899469 -47944387 + MMSAT4 Satellite Satellite 1 1651 0 4 1148 232 297 38 30 chr11 73899834 73899966 -47943890 + MMSAT4 Satellite Satellite 30 162 -6 4 1148 411 73 0 0 chr11 73902023 73902078 -47941778 + (T)n Simple_repeat Simple_repeat 1 55 0 4 1148 1200 41 7 0 chr11 73902085 73902232 -47941624 - B1_Mus1 SINE Alu 0 148 1 4 1148 848 268 45 19 chr11 73902903 73903211 -47940645 - L1_Rod LINE L1 -163 5684 5369 4 1148 243 287 43 9 chr11 73903223 73903339 -47940517 - L1_Mur2 LINE L1 -587 5290 5171 4 1148 3083 192 306 54 chr11 73903356 73903665 -47940191 + RLTR25B LTR ERVK 5 355 -673 5 1148 3231 143 23 9 chr11 73903665 73904228 -47939628 + Lx3_Mus LINE L1 6439 7009 0 5 1148 3083 186 88 63 chr11 73904228 73904626 -47939230 + RLTR25B LTR ERVK 356 764 -264 5 1148 4701 112 4 1 chr11 73904626 73905316 -47938540 + Lx3_Mus LINE L1 6310 7001 -8 5 1148 3083 186 88 63 chr11 73905316 73905431 -47938425 + RLTR25B LTR ERVK 765 918 -110 5 1148 370 198 0 47 chr11 73905502 73905608 -47938248 - L1_Rod LINE L1 -729 5118 5018 4 1148 252 264 28 0 chr11 73905608 73905742 -47938114 + (TAGA)n Simple_repeat Simple_repeat 1 137 0 5 1148 306 0 0 0 chr11 73905815 73905849 -47938007 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1148 1523 309 42 24 chr11 73905865 73906485 -47937371 + Lx8 LINE L1 6668 7298 -175 5 1148 2319 144 65 0 chr11 73906672 73907137 -47936719 + L1_Mur2 LINE L1 4844 5338 -539 5 1148 1160 61 0 13 chr11 73907521 73907670 -47936186 + B1_Mus1 SINE Alu 2 148 0 5 1148 11610 89 13 2 chr11 73907670 73910060 -47933796 + L1_Mus1 LINE L1 4154 6566 -1 5 1148 6437 95 47 11 chr11 73910072 73911704 -47932152 - L1VL2 LINE L1 -1605 2010 310 5 1148 1809 152 28 3 chr11 73911710 73912027 -47931829 - RMER6C LTR ERVK -365 325 1 5 1148 1878 228 8 11 chr11 73912141 73912514 -47931342 + ORR1D1 LTR MaLR 1 372 -2 5 1148 2229 283 33 39 chr11 73912777 73913626 -47930230 + Lx9 LINE L1 6627 7470 -174 5 1148 23 68 0 0 chr11 73913736 73913780 -47930076 + AT_rich Low_complexity Low_complexity 1 44 0 5 1148 203 354 5 53 chr11 73913910 73914066 -47929790 + MIRb SINE MIR 72 220 -48 5 1148 193 297 68 86 chr11 73914082 73914244 -47929612 - MIRb SINE MIR -1 267 109 5 1148 348 256 12 12 chr11 73915633 73915716 -47928140 - 4.5SRNA scRNA scRNA -6 88 6 5 1148 485 32 16 0 chr11 73915731 73915794 -47928062 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 5 1148 416 104 0 15 chr11 73915977 73916045 -47927811 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 5 1148 214 171 0 0 chr11 73917107 73917148 -47926708 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1148 4113 73 6 2 chr11 73917271 73917802 -47926054 - L1_Mus1 LINE L1 0 6567 6035 5 1148 21 0 0 0 chr11 73917896 73917917 -47925939 + AT_rich Low_complexity Low_complexity 1 21 0 5 1148 2277 123 24 82 chr11 73918741 73919158 -47924698 + RLTR9C LTR ERVK 1 393 0 5 1148 3985 199 54 91 chr11 73919167 73920513 -47923343 + MMETn-int LTR ERVK 10 1306 -3538 5 1148 686 130 8 25 chr11 73920527 73920645 -47923211 + MMETn-int LTR ERVK 2494 2609 -4797 5 1148 579 180 50 17 chr11 73920622 73920877 -47922979 + MMETn-int LTR ERVK 2975 3410 -3996 5 1148 1149 83 5 22 chr11 73920883 73921068 -47922788 + RLTR13D1 LTR ERVK 469 650 -156 5 1148 3582 163 68 72 chr11 73921386 73923319 -47920537 + MMETn-int LTR ERVK 1997 5443 -1801 5 1148 507 68 14 0 chr11 73923534 73923608 -47920248 + MMETn-int LTR ERVK 7331 7405 -1 5 1148 411 115 0 0 chr11 73923612 73923673 -47920183 + RLTR9C LTR ERVK 5 65 -328 5 1148 335 73 0 35 chr11 73923675 73923732 -47920124 + RLTR9C LTR ERVK 311 365 -28 5 1149 21 0 0 0 chr11 73925218 73925239 -47918617 + AT_rich Low_complexity Low_complexity 1 21 0 5 1149 561 30 0 0 chr11 73925411 73925478 -47918378 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1149 2366 196 46 11 chr11 73925572 73926094 -47917762 - RMER1B Other Other -3 1063 524 5 1149 24641 139 28 6 chr11 73927929 73934066 -47909790 - L1_Mus3 LINE L1 -4 6634 357 5 1149 387 0 0 0 chr11 73936353 73936396 -47907460 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 5 1149 254 211 110 27 chr11 73936692 73936765 -47907091 - RMER10A LTR ERVL -46 396 318 5 1149 578 237 183 50 chr11 73937188 73937428 -47906428 - RLTR10A LTR ERVK 0 411 140 5 1149 1758 252 36 35 chr11 73937468 73938744 -47905112 - RLTR45-int LTR ERVK -202 7042 6522 5 1149 587 233 5 1 chr11 73938732 73938916 -47904940 - RLTR45-int LTR ERVK -3726 3855 3511 5 1149 336 245 36 54 chr11 73939370 73939482 -47904374 - RLTR10-int LTR ERVK -1559 428 319 5 1149 621 228 183 50 chr11 73939499 73939739 -47904117 - RLTR10A LTR ERVK 0 411 140 5 1149 26 0 0 0 chr11 73939834 73939860 -47903996 + AT_rich Low_complexity Low_complexity 1 26 0 5 1149 2604 154 27 2 chr11 73939940 73940388 -47903468 + Lx LINE L1 6195 6653 -1 5 1149 586 315 35 35 chr11 73941411 73941641 -47902215 - MLT1D LTR MaLR -9 496 267 5 1149 2998 12 3 0 chr11 73942409 73942745 -47901111 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1149 57459 21 9 6 chr11 73942745 73949202 -47894654 + IAPEz-int LTR ERVK 8 6481 0 5 1149 3028 12 3 0 chr11 73949202 73949538 -47894318 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1149 1012 298 9 29 chr11 73950287 73950636 -47893220 - RNERVK23-int LTR ERVK -823 7394 7053 5 1149 657 243 0 0 chr11 73950655 73950799 -47893057 - RNERVK23-int LTR ERVK -3876 4341 4198 5 1149 481 101 0 0 chr11 73950819 73950888 -47892968 - tRNA-Lys-AAG tRNA tRNA -6 70 2 5 1149 2708 332 47 59 chr11 73950889 73952727 -47891129 - RNERVK23-int LTR ERVK -6232 1985 169 5 1149 404 218 78 66 chr11 73952902 73953069 -47890787 - RNLTR23 LTR ERVK 0 642 474 5 1149 6151 93 44 7 chr11 73953309 73954179 -47889677 + RLTR13D6 LTR ERVK 1 902 0 5 1149 2198 295 18 129 chr11 73954219 73955126 -47888730 + RMER1C Other Other 3 794 -548 5 1149 2891 75 219 0 chr11 73955126 73955550 -47888306 + MURVY-LTR LTR ERV1 1 517 -2 5 1149 2198 277 25 85 chr11 73955550 73956068 -47887788 + RMER1C Other Other 574 1050 -292 5 1149 526 165 39 49 chr11 73956035 73956137 -47887719 + Lx4B LINE L1 6607 6707 -351 5 1149 610 200 0 0 chr11 73956750 73956860 -47886996 + B1_Mur2 SINE Alu 5 114 -35 5 1149 2218 59 0 0 chr11 73957061 73957333 -47886523 - L1_Mus1 LINE L1 0 6567 6296 5 1149 396 0 0 0 chr11 73957770 73957814 -47886042 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1149 192 40 0 0 chr11 73957885 73957910 -47885946 + (TTC)n Simple_repeat Simple_repeat 2 26 0 5 1149 2406 220 28 14 chr11 73958615 73959113 -47884743 - Lx3C LINE L1 -2 6974 6470 5 1149 16001 89 18 4 chr11 73959138 73961259 -47882597 + MERVK26-int LTR ERVK 2010 4161 -2758 5 1149 9230 74 29 1 chr11 73961247 73962454 -47881402 + MERVK26-int LTR ERVK 4436 5676 -1243 5 1149 1200 89 0 31 chr11 73962454 73962617 -47881239 + L1_Mus2 LINE L1 6287 6444 -122 5 1149 641 188 0 0 chr11 73962625 73962737 -47881119 + RLTR26 LTR ERVK 531 642 0 5 1149 606 221 29 0 chr11 73962737 73962877 -47880979 - ORR1B2 LTR MaLR -40 327 184 5 1149 1104 263 81 50 chr11 73963717 73963900 -47879956 + Lx9 LINE L1 6627 6812 -832 5 1149 4335 110 54 24 chr11 73963900 73964148 -47879708 - Lx LINE L1 0 6654 6388 5 1149 5004 144 57 10 chr11 73964148 73965011 -47878845 - RMER17A2 LTR ERVK -3 903 1 5 1149 4335 110 54 24 chr11 73965011 73965442 -47878414 - Lx LINE L1 -267 6387 5954 5 1149 1104 292 71 71 chr11 73965442 73965845 -47878011 + Lx9 LINE L1 6664 7062 -411 5 1149 418 252 36 0 chr11 73965830 73965941 -47877915 + Lx9 LINE L1 7359 7473 -171 5 1149 483 18 0 0 chr11 73966529 73966585 -47877271 + (TAA)n Simple_repeat Simple_repeat 2 57 0 5 1149 24 67 0 0 chr11 73968490 73968535 -47875321 + AT_rich Low_complexity Low_complexity 1 45 0 5 1149 31430 128 24 25 chr11 73971573 73977896 -47865960 - L1_Mus1 LINE L1 -2 6565 262 5 1149 624 243 217 5 chr11 73978423 73978626 -47865230 + Lx2B LINE L1 6747 6992 -8 5 1149 6167 61 8 6 chr11 73978685 73979462 -47864394 + L1Md_F2 LINE L1 5796 6573 -9 5 1149 269 103 0 33 chr11 73979476 73979536 -47864320 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 5 1149 2856 43 5 51 chr11 73980199 73980316 -47863540 + MTA_Mm LTR MaLR 1 117 -279 5 1149 3048 47 33 25 chr11 73980316 73980709 -47863147 + MTA_Mm LTR MaLR 1 396 0 5 1149 2856 43 5 51 chr11 73980709 73981006 -47862850 + MTA_Mm LTR MaLR 118 396 0 5 1149 1970 114 13 0 chr11 73981006 73981322 -47862534 + MTA_Mm-int LTR MaLR 1 320 -778 5 1149 3191 78 7 2 chr11 73981330 73981783 -47862073 - MT-int LTR MaLR -137 961 507 5 1149 2560 75 0 0 chr11 73981783 73982118 -47861738 - L1_Mm LINE L1 -1206 4677 4343 5 1149 655 108 9 9 chr11 73982409 73982521 -47861335 + (GA)n Simple_repeat Simple_repeat 2 113 0 5 1149 317 169 0 135 chr11 73982750 73982839 -47861017 + RLTR19-int LTR ERVK 2946 3022 -3115 5 1149 3641 12 0 5 chr11 73983439 73983851 -47860005 + L1Md_A LINE L1 6173 6582 0 5 1149 256 279 35 0 chr11 73983906 73983992 -47859864 + PB1D10 SINE Alu 27 115 -2 5 1149 5120 80 29 9 chr11 73984135 73984900 -47858956 - L1VL2 LINE L1 -1789 1826 1047 5 1149 36495 72 3 5 chr11 73984898 73991070 -47852786 - L1Md_F3 LINE L1 -1 6583 422 5 1149 1841 79 0 0 chr11 73991070 73991354 -47852502 - L1VL2 LINE L1 -2553 1062 779 5 1149 1128 121 52 5 chr11 73991353 73991544 -47852312 - L1VL2 LINE L1 -6063 272 73 5 1149 1330 201 0 4 chr11 73991552 73991817 -47852039 - MurERV4-int LTR ERVK -843 4417 4154 5 1149 1732 110 70 0 chr11 73992484 73992756 -47851100 - Lx2A1 LINE L1 -9 6999 6709 5 1149 1420 78 0 6 chr11 73992756 73992937 -47850919 + B2_Mm2 SINE B2 2 181 -14 5 1149 2199 140 40 59 chr11 73994225 73994681 -47849175 + RMER6B LTR ERVK 7 453 -8 5 1149 398 192 2 20 chr11 73994694 73994781 -47849075 - MYSERV6-int LTR ERVK -1639 7320 7248 5 1149 192 163 0 0 chr11 73995138 73995181 -47848675 + A-rich Low_complexity Low_complexity 1 43 0 5 1149 4209 130 44 120 chr11 73996035 73997003 -47846853 + RMER17A2 LTR ERVK 1 895 -11 5 1149 3511 124 27 18 chr11 73997204 73997763 -47846093 + LTRIS2 LTR ERV1 1 564 0 5 1149 22 35 0 0 chr11 73998654 73998683 -47845173 + AT_rich Low_complexity Low_complexity 1 29 0 5 1149 386 268 0 0 chr11 73998788 73998870 -47844986 + BC1_Mm scRNA scRNA 1 82 -70 5 1149 205 287 121 23 chr11 73999141 73999273 -47844583 + L3 LINE CR1 4334 4478 -11 5 1149 279 0 0 0 chr11 74000180 74000211 -47843645 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1149 253 304 43 14 chr11 74000379 74000449 -47843407 + B1_Mur2 SINE Alu 1 72 -77 2 1149 348 292 9 26 chr11 74000434 74000550 -47843306 - ID_B1 SINE B4 -87 137 24 3 1149 457 278 46 31 chr11 74000777 74000907 -47842949 - RSINE1 SINE B4 -28 137 6 4 1149 866 226 111 0 chr11 74000965 74001155 -47842701 - B3 SINE B2 -5 211 1 5 1149 244 310 0 0 chr11 74003014 74003085 -47840771 + PB1D10 SINE Alu 45 115 -2 6 1149 6034 88 17 5 chr11 74003229 74004496 -47839360 - L1VL2 LINE L1 -1789 1826 545 7 1149 2265 111 67 25 chr11 74004547 74004908 -47838948 - Lx LINE L1 -6 6648 6273 8 1149 402 21 0 0 chr11 74005556 74005603 -47838253 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1149 423 0 0 0 chr11 74005771 74005818 -47838038 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1149 301 146 0 0 chr11 74005873 74005921 -47837935 - B3 SINE B2 -167 49 2 1 1149 491 326 69 20 chr11 74005924 74006171 -47837685 - RMER5 LTR ERV1 -42 492 234 1 1149 427 240 8 9 chr11 74007444 74007567 -47836289 - MLT1J1 LTR MaLR -311 137 16 1 1149 710 340 10 10 chr11 74007888 74008096 -47835760 + B4A SINE B4 1 208 -84 1 1149 201 254 14 43 chr11 74010188 74010258 -47833598 + MIRc SINE MIR 135 202 -66 1 1149 1240 75 0 0 chr11 74010442 74010588 -47833268 - B1_Mm SINE Alu 0 147 2 1 1149 987 255 51 28 chr11 74011563 74011817 -47832039 + B4A SINE B4 27 286 -6 1 1149 4757 184 12 18 chr11 74011905 74012911 -47830945 - Lx2B LINE L1 -2 6974 5943 1 1149 15110 38 5 0 chr11 74013295 74015799 -47828057 - L1Md_T LINE L1 0 6582 4066 1 1149 1119 247 176 62 chr11 74015932 74016433 -47827423 - RMER4B LTR ERVK -11 574 17 2 1149 28 29 0 0 chr11 74016583 74016618 -47827238 + AT_rich Low_complexity Low_complexity 1 35 0 2 1149 429 152 0 0 chr11 74016702 74016768 -47827088 + RMER15 LTR ERVL 6 71 -504 2 1149 4787 143 42 5 chr11 74017205 74017983 -47825873 - Lx2 LINE L1 -153 6844 6038 2 1149 365 315 143 53 chr11 74018131 74018396 -47825460 + ORR1E LTR MaLR 67 355 -4 2 1149 390 361 82 0 chr11 74018397 74018555 -47825301 + LTR33 LTR ERVL 30 200 -315 2 1149 337 302 125 16 chr11 74018822 74018950 -47824906 - B1F SINE Alu -7 142 1 2 1149 321 328 15 90 chr11 74021656 74021790 -47822066 + MLT1J1 LTR MaLR 1 124 -320 2 1149 281 102 41 0 chr11 74021906 74021955 -47821901 + (GGGAGA)n Simple_repeat Simple_repeat 2 52 0 2 1149 205 244 0 0 chr11 74025378 74025423 -47818433 - L3 LINE CR1 -111 4378 4334 2 1149 27 49 0 0 chr11 74025594 74025635 -47818221 + AT_rich Low_complexity Low_complexity 1 41 0 3 1149 396 272 0 28 chr11 74025673 74025779 -47818077 - BC1_Mm scRNA scRNA -46 106 4 3 1149 902 269 113 63 chr11 74026672 74027113 -47816743 - RLTR12B LTR ERVK -27 501 39 3 1149 342 278 112 17 chr11 74027680 74027859 -47815997 - L1MC4 LINE L1 -952 7090 6895 3 1149 368 147 0 13 chr11 74027943 74028019 -47815837 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1149 214 299 12 72 chr11 74029947 74030030 -47813826 + MIRm SINE MIR 41 118 -158 3 1149 279 207 52 0 chr11 74031236 74031294 -47812562 + Lx9 LINE L1 7221 7281 -363 3 1149 360 139 0 0 chr11 74031301 74031380 -47812476 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1149 374 151 139 19 chr11 74031380 74031488 -47812368 + Lx9 LINE L1 7523 7643 -1 3 1149 7477 95 4 4 chr11 74031579 74033193 -47810663 - L1_Mus1 LINE L1 0 6567 4956 3 1149 3180 20 42 3 chr11 74033194 74033547 -47810309 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1149 55898 23 23 2 chr11 74033547 74039891 -47803965 - IAPEz-int LTR ERVK 0 6481 8 3 1149 3180 20 42 3 chr11 74039891 74040244 -47803612 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1149 15908 122 3 82 chr11 74040245 74040821 -47803035 - L1_Mus1 LINE L1 -924 4959 4384 3 1149 4199 42 0 0 chr11 74040821 74041294 -47802562 - L1Md_T LINE L1 -1 6581 6109 4 1149 15908 122 3 82 chr11 74041294 74043579 -47800277 - L1_Mus1 LINE L1 -1500 4383 2324 3 1149 28852 77 11 24 chr11 74043580 74045678 -47798178 - L1Md_F2 LINE L1 0 6582 4475 4 1149 8825 32 1 0 chr11 74045678 74046652 -47797204 + L1Md_A LINE L1 5605 6579 -3 4 1149 28852 115 20 61 chr11 74046652 74051230 -47792626 - L1Md_F2 LINE L1 -1409 4477 559 4 1149 374 353 42 10 chr11 74051259 74051451 -47792405 + RMER15 LTR ERVL 246 443 -132 4 1149 390 346 14 14 chr11 74052220 74052358 -47791498 - ID_B1 SINE B4 -6 218 81 4 1149 350 290 129 0 chr11 74054685 74054809 -47789047 - Lx8 LINE L1 -358 7115 6976 4 143 31210 114 19 11 chr11 74054948 74061144 -47782712 + L1_Mus1 LINE L1 316 6567 0 4 1150 104 46 0 0 chr11 74061603 74061756 -47782100 + AT_rich Low_complexity Low_complexity 1 153 0 4 1150 1567 43 5 0 chr11 74061949 74062136 -47781720 + L1_Mus1 LINE L1 6379 6566 -1 4 1150 487 259 52 27 chr11 74062469 74062623 -47781233 - Lx9 LINE L1 -927 6717 6449 4 1150 342 0 0 0 chr11 74063004 74063042 -47780814 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1150 785 287 51 5 chr11 74063082 74063299 -47780557 - B4A SINE B4 -63 229 3 5 1150 8175 99 8 28 chr11 74063712 74064849 -47779007 + RLTR13D3 LTR ERVK 1 1114 0 5 1150 471 18 0 0 chr11 74064879 74064935 -47778921 + (TGG)n Simple_repeat Simple_repeat 3 58 0 5 1150 253 82 20 20 chr11 74064969 74065019 -47778837 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1150 216 97 0 0 chr11 74065051 74065082 -47778774 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1150 388 320 48 39 chr11 74065126 74065230 -47778626 - RSINE1 SINE B4 -57 108 4 5 1150 8274 98 21 19 chr11 74065305 74066500 -47777356 - Lx3_Mus LINE L1 0 7009 5813 5 1150 5797 158 40 4 chr11 74066498 74066622 -47777234 - Lx2 LINE L1 -2 6995 6868 5 1150 213 39 0 0 chr11 74066622 74066648 -47777208 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1150 5797 158 40 4 chr11 74066648 74067448 -47776408 - Lx2 LINE L1 -130 6867 6038 5 1150 429 306 141 52 chr11 74067596 74067865 -47775991 + ORR1E LTR MaLR 67 359 0 6 1150 423 323 81 12 chr11 74067870 74068030 -47775826 + LTR33 LTR ERVL 30 200 -315 6 1150 293 344 109 0 chr11 74068291 74068419 -47775437 - B1F SINE Alu -7 142 1 6 1150 21 0 0 0 chr11 74068519 74068540 -47775316 + AT_rich Low_complexity Low_complexity 1 21 0 6 1150 180 359 47 0 chr11 74068929 74068993 -47774863 - MIRc SINE MIR -86 182 116 6 1150 2321 76 47 32 chr11 74070319 74070604 -47773252 + ORR1A1 LTR MaLR 1 298 -48 6 1150 321 85 0 106 chr11 74070604 74070670 -47773186 + L1_Mus1 LINE L1 6509 6567 0 6 1150 2321 76 47 32 chr11 74070670 74070725 -47773131 + ORR1A1 LTR MaLR 299 346 0 6 1150 820 244 128 51 chr11 74071004 74071390 -47772466 - RLTR12B LTR ERVK -92 476 39 6 1150 299 262 163 23 chr11 74071953 74072125 -47771731 - L1MC4 LINE L1 -952 7090 6895 6 1150 567 43 0 0 chr11 74072210 74072280 -47771576 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 1150 276 301 36 60 chr11 74072565 74072731 -47771125 + RNLTR23 LTR ERVK 479 640 -2 7 1150 991 73 0 32 chr11 74072733 74072918 -47770938 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1150 351 0 0 0 chr11 74072918 74072956 -47770900 + (TATG)n Simple_repeat Simple_repeat 2 40 0 7 1150 206 62 31 0 chr11 74072993 74073025 -47770831 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1150 288 0 0 0 chr11 74073025 74073056 -47770800 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 7 1150 210 321 11 69 chr11 74074985 74075072 -47768784 + MIRc SINE MIR 34 115 -153 7 1150 239 192 58 0 chr11 74076248 74076300 -47767556 + Lx9 LINE L1 7221 7275 -369 7 1150 432 0 0 0 chr11 74076300 74076348 -47767508 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1150 457 74 24 24 chr11 74076352 74076435 -47767421 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 7 1150 475 153 90 0 chr11 74076436 74076547 -47767309 + Lx9 LINE L1 7523 7643 -1 7 1150 29 0 0 0 chr11 74076720 74076749 -47767107 + AT_rich Low_complexity Low_complexity 1 29 0 7 1150 2003 180 65 17 chr11 74077352 74077754 -47766102 - RLTR26 LTR ERVK 0 642 222 8 1150 1134 176 24 24 chr11 74077728 74077937 -47765919 - RMER17A2 LTR ERVK -697 209 1 8 1150 30419 71 8 12 chr11 74077940 74081840 -47762016 - MERVK26-int LTR ERVK -2 6917 3032 8 1150 403 328 8 0 chr11 74081880 74082002 -47761854 - ID_B1 SINE B4 -1 223 101 8 1150 1248 68 0 0 chr11 74082287 74082434 -47761422 + B1_Mm SINE Alu 1 147 0 8 1150 203 167 0 0 chr11 74084150 74084192 -47759664 + T-rich Low_complexity Low_complexity 6 47 0 8 1150 561 300 0 0 chr11 74084515 74084655 -47759201 - Lx8 LINE L1 -358 7115 6976 8 1150 73 66 0 0 chr11 74085125 74085261 -47758595 + AT_rich Low_complexity Low_complexity 1 136 0 8 1150 31692 112 17 2 chr11 74085267 74091579 -47752277 + L1_Mus1 LINE L1 171 6636 0 8 1150 35 24 0 0 chr11 74091591 74091633 -47752223 + AT_rich Low_complexity Low_complexity 1 42 0 8 1150 381 271 35 29 chr11 74091923 74092066 -47751790 - Lx9 LINE L1 -926 6718 6460 8 1150 414 0 0 0 chr11 74092458 74092504 -47751352 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1150 859 271 52 0 chr11 74092551 74092761 -47751095 - B4A SINE B4 -69 223 3 9 1150 6418 118 20 39 chr11 74093170 74094216 -47749640 + RLTR13D3 LTR ERVK 5 995 -119 9 1150 1189 82 7 0 chr11 74094607 74094753 -47749103 + B1_Mus1 SINE Alu 2 148 0 9 1150 838 249 70 55 chr11 74095816 74096088 -47747768 - RLTR12B LTR ERVK -196 332 57 9 1150 258 303 104 26 chr11 74096605 74096798 -47747058 - L1MC4 LINE L1 -940 7102 6895 9 1150 371 174 12 0 chr11 74096885 74096971 -47746885 + (TA)n Simple_repeat Simple_repeat 1 87 0 9 1150 332 172 52 0 chr11 74100195 74100253 -47743603 + Lx9 LINE L1 7221 7281 -363 9 1150 261 0 0 0 chr11 74100259 74100288 -47743568 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1150 420 91 0 0 chr11 74100289 74100355 -47743501 + (GA)n Simple_repeat Simple_repeat 2 67 0 9 1150 498 153 90 0 chr11 74100355 74100466 -47743390 + Lx9 LINE L1 7523 7643 -1 9 1150 442 308 15 15 chr11 74101304 74101436 -47742420 - ID_B1 SINE B4 -1 223 92 1 1150 212 167 0 0 chr11 74103406 74103448 -47740408 + T-rich Low_complexity Low_complexity 6 47 0 1 1150 532 307 0 0 chr11 74103772 74103912 -47739944 - Lx8 LINE L1 -358 7115 6976 1 1150 95 49 0 0 chr11 74104395 74104539 -47739317 + AT_rich Low_complexity Low_complexity 1 144 0 1 1150 484 257 23 26 chr11 74104838 74104994 -47738862 - Lx8 LINE L1 -926 6718 6449 1 1150 606 14 0 0 chr11 74105366 74105437 -47738419 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1150 830 300 32 5 chr11 74105477 74105695 -47738161 - B4A SINE B4 -63 229 6 1 1150 32 57 0 0 chr11 74105932 74105985 -47737871 + AT_rich Low_complexity Low_complexity 1 53 0 1 1150 385 60 0 0 chr11 74105985 74106035 -47737821 - Lx3_Mus LINE L1 -867 6142 6093 1 1150 7717 108 6 14 chr11 74106156 74107271 -47736585 + RLTR13D3 LTR ERVK 1 1107 -7 1 1150 351 65 0 0 chr11 74107417 74107463 -47736393 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 1 1150 383 354 10 0 chr11 74107515 74107611 -47736245 - RSINE1 SINE B4 -65 100 4 1 1150 394 209 0 73 chr11 74107675 74107690 -47736166 - Lx2 LINE L1 0 6654 6643 1 1150 8385 115 17 5 chr11 74107690 74108870 -47734986 - Lx3_Mus LINE L1 -2 7007 5814 1 1150 470 229 32 12 chr11 74108870 74109019 -47734837 - Lx2 LINE L1 0 7058 6888 1 1150 3367 135 44 91 chr11 74108996 74109289 -47734567 - Lx2 LINE L1 -349 6648 6349 1 1150 2059 72 135 10 chr11 74109289 74109585 -47734271 + L1_Mus2 LINE L1 6234 6566 0 1 1150 3367 135 44 91 chr11 74109585 74109927 -47733929 - Lx2 LINE L1 -649 6348 6043 1 1150 293 313 98 29 chr11 74110089 74110343 -47733513 + MTEa LTR MaLR 80 375 -4 1 1150 453 350 69 0 chr11 74110349 74110509 -47733347 + LTR33 LTR ERVL 30 200 -315 1 1150 226 320 134 16 chr11 74110770 74110897 -47732959 - B1F SINE Alu -7 142 1 1 1150 180 347 133 0 chr11 74111475 74111550 -47732306 - L2b LINE L2 -187 3188 3104 1 1150 707 253 68 53 chr11 74113183 74113446 -47730410 - RLTR12B LTR ERVK -205 323 57 1 1150 251 226 57 0 chr11 74114957 74115010 -47728846 + Lx9 LINE L1 7224 7279 -365 1 1150 683 62 10 0 chr11 74115021 74115118 -47728738 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 1150 571 136 91 0 chr11 74115118 74115228 -47728628 + Lx9 LINE L1 7524 7643 -1 1 1150 29045 7 0 1 chr11 74115354 74120030 -47723826 + L1Md_A LINE L1 1 4473 -1410 1 1150 36138 35 0 0 chr11 74120028 74125769 -47718087 + L1Md_T LINE L1 1 5589 -297 1 1150 9129 7 0 0 chr11 74125769 74126765 -47717091 + L1Md_T LINE L1 5590 6585 0 1 1150 10313 5 2 0 chr11 74126765 74127901 -47715955 + L1Md_A LINE L1 4449 5586 -297 1 1150 9126 4 2 0 chr11 74127901 74128895 -47714961 + L1Md_A LINE L1 5587 6582 0 1 1150 387 308 15 15 chr11 74129669 74129801 -47714055 - ID_B1 SINE B4 -1 223 92 1 1150 8358 46 4 8 chr11 74131811 74133180 -47710676 - L1Md_F2 LINE L1 0 6582 5222 1 1150 1021 50 0 0 chr11 74133293 74133414 -47710442 + 5S rRNA rRNA 1 121 0 1 1150 1503 58 0 5 chr11 74133443 74133634 -47710222 + B2_Mm2 SINE B2 3 192 -3 1 1150 601 286 0 0 chr11 74133869 74134009 -47709847 - Lx8 LINE L1 -358 7115 6976 1 1150 53 95 0 0 chr11 74134485 74134643 -47709213 + AT_rich Low_complexity Low_complexity 1 158 0 1 1150 22 35 0 0 chr11 74134945 74134974 -47708882 + AT_rich Low_complexity Low_complexity 1 29 0 1 1150 445 276 38 30 chr11 74134979 74135110 -47708746 + Lx8 LINE L1 7189 7320 -153 1 1150 1446 127 192 0 chr11 74137085 74137345 -47706511 - Lx4A LINE L1 -259 6799 6490 1 1150 10704 147 35 17 chr11 74137341 74139260 -47704596 + Lx5 LINE L1 3732 5686 -191 1 1150 919 192 79 5 chr11 74139268 74139482 -47704374 + RMER4B LTR ERVK 17 246 -339 1 1150 525 180 232 42 chr11 74139706 74139874 -47703982 + RMER4B LTR ERVK 377 576 -9 1 1150 1964 113 11 77 chr11 74139884 74140237 -47703619 + Lx5 LINE L1 5686 6015 -1035 1 1150 222 331 137 24 chr11 74140497 74140621 -47703235 + MER5B DNA MER1_type 2 139 -39 1 1150 2394 113 33 17 chr11 74141281 74141640 -47702216 + RLTR9A LTR ERVK 1 365 -3 1 1150 253 330 0 0 chr11 74142836 74142939 -47700917 + MLT1D LTR MaLR 394 496 -9 1 1150 301 255 159 13 chr11 74143313 74143464 -47700392 - L1M5 LINE L1 -994 5450 5278 1 1150 504 0 0 0 chr11 74144558 74144614 -47699242 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1150 954 93 7 0 chr11 74146022 74146161 -47697695 + B1_Mm SINE Alu 8 147 0 1 1150 180 111 0 0 chr11 74146165 74146192 -47697664 + (GAA)n Simple_repeat Simple_repeat 1 27 0 1 1150 21 0 0 0 chr11 74149176 74149197 -47694659 + AT_rich Low_complexity Low_complexity 1 21 0 1 1150 321 26 0 0 chr11 74149430 74149468 -47694388 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1150 1457 58 16 16 chr11 74152046 74152238 -47691618 - B2_Mm2 SINE B2 -2 193 2 1 1150 211 378 10 0 chr11 74152485 74152583 -47691273 - MIRb SINE MIR -82 186 88 1 1150 2875 251 93 42 chr11 74152743 74153004 -47690852 - Lx9 LINE L1 -5 7639 7343 1 1150 4530 49 5 0 chr11 74153004 74153557 -47690299 - L1Md_F2 LINE L1 0 6582 6027 1 1150 2875 251 93 42 chr11 74153557 74154258 -47689598 - Lx9 LINE L1 -302 7342 6627 1 1150 1775 212 14 3 chr11 74154521 74154886 -47688970 - ORR1D1 LTR MaLR 0 374 6 1 1150 369 317 65 7 chr11 74155186 74155361 -47688495 + ORR1E LTR MaLR 3 200 -170 1 1150 244 222 151 32 chr11 74155570 74155659 -47688197 - RMER20B LTR ERVK -214 413 314 1 1150 4648 127 10 19 chr11 74155659 74156471 -47687385 + RLTR22_Mur LTR ERVK 1 805 -1043 1 1150 384 316 49 76 chr11 74156750 74156973 -47686883 + RMER12 LTR ERVK 1101 1317 -5 1 1150 453 264 64 13 chr11 74156977 74157134 -47686722 - RMER20B LTR ERVK -308 319 155 1 1150 2094 228 117 33 chr11 74157333 74157948 -47685908 + Lx9 LINE L1 6968 7634 -10 1 1150 21 57 0 0 chr11 74158737 74158772 -47685084 + AT_rich Low_complexity Low_complexity 1 35 0 1 1150 428 337 87 28 chr11 74158971 74159224 -47684632 - MLT1A LTR MaLR -11 363 96 1 1150 608 244 58 48 chr11 74159262 74159469 -47684387 - Lx8 LINE L1 0 7473 7265 1 1150 25 31 0 0 chr11 74159639 74159671 -47684185 + AT_rich Low_complexity Low_complexity 1 32 0 1 1150 35 0 0 0 chr11 74159786 74159821 -47684035 + AT_rich Low_complexity Low_complexity 1 35 0 1 1150 576 238 54 0 chr11 74159969 74160116 -47683740 - ID_B1 SINE B4 0 224 70 1 1150 267 53 0 0 chr11 74161329 74161367 -47682489 + L1M3 LINE L1 5762 5799 -369 1 1150 247 220 0 33 chr11 74161536 74161597 -47682259 + GA-rich Low_complexity Low_complexity 6 64 0 1 1150 253 274 0 67 chr11 74162344 74162434 -47681422 - RMER1C Other Other -18 1324 1241 1 1150 338 303 82 36 chr11 74162369 74162564 -47681292 - Lx8 LINE L1 -29 7444 7241 1 1150 435 38 0 0 chr11 74162637 74162690 -47681166 + (ATG)n Simple_repeat Simple_repeat 3 55 0 1 1150 418 220 11 21 chr11 74162712 74162805 -47681051 - B4A SINE B4 -193 99 8 1 1150 470 272 103 43 chr11 74163018 74163252 -47680604 + L1M2 LINE L1 4932 5179 -964 1 1150 252 128 21 0 chr11 74163393 74163440 -47680416 + L1M2 LINE L1 5328 5375 -925 1 1150 581 302 6 12 chr11 74163880 74164044 -47679812 - RSINE1 SINE B4 0 165 3 1 1150 189 0 0 0 chr11 74164181 74164202 -47679654 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1150 884 176 125 21 chr11 74164291 74164483 -47679373 - URR1A DNA MER1_type -14 212 1 1 1150 1479 88 0 5 chr11 74166439 74166634 -47677222 - B2_Mm2 SINE B2 0 195 2 1 1150 229 237 42 179 chr11 74166960 74167150 -47676706 + MER34A LTR ERV1 10 173 -398 1 1150 228 51 0 0 chr11 74167394 74167433 -47676423 - L1_Mus1 LINE L1 0 6567 6529 1 1150 246 245 125 38 chr11 74167445 74167592 -47676264 - MIRm SINE MIR -102 174 8 1 1150 657 234 44 0 chr11 74168234 74168371 -47675485 + ID_B1 SINE B4 78 220 -4 1 1150 262 321 43 31 chr11 74168256 74168417 -47675439 - YREP_Mm Unknown Unknown -1518 294 132 1 1150 7516 155 57 53 chr11 74169280 74171349 -47672507 + L1_Mur2 LINE L1 901 2913 -2964 1 1150 338 213 0 0 chr11 74171404 74171465 -47672391 + Lx8 LINE L1 6208 6268 -1205 1 1150 277 51 0 0 chr11 74171466 74171505 -47672351 + B1_Mus2 SINE Alu 109 147 0 1 1150 1130 87 0 0 chr11 74171528 74171666 -47672190 + B1_Mus1 SINE Alu 1 138 -10 1 1150 207 0 0 0 chr11 74171666 74171689 -47672167 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1150 3327 258 34 48 chr11 74171726 74172176 -47671680 + Lx8 LINE L1 6355 6792 -681 1 1150 1287 41 0 0 chr11 74172176 74172323 -47671533 - B1_Mm SINE Alu 0 147 1 1 1150 3327 258 34 48 chr11 74172323 74172869 -47670987 + Lx8 LINE L1 6793 7337 -136 1 1150 1066 284 23 23 chr11 74172897 74173240 -47670616 + Lx8 LINE L1 6745 7087 -386 1 1150 474 250 20 14 chr11 74173234 74173380 -47670476 + L1_Rod LINE L1 2860 3006 -2841 1 1150 300 342 85 88 chr11 74173610 74173940 -47669916 + LTR16A1 LTR ERVL 35 363 -93 1 1150 1227 268 67 0 chr11 74173956 74174270 -47669586 - ORR1D2 LTR MaLR -35 335 1 1 1150 463 274 74 0 chr11 74174397 74174532 -47669324 - L1MA6 LINE L1 -362 5938 5794 1 1150 326 344 150 9 chr11 74174678 74174898 -47668958 - L1MEg LINE L1 -5316 768 518 1 1150 225 240 38 51 chr11 74174936 74175015 -47668841 + RLTR28 LTR ERVL 191 268 -213 1 1150 366 269 81 3 chr11 74175013 74175136 -47668720 - PB1D10 SINE Alu -16 134 9 1 1150 464 311 17 80 chr11 74175050 74175225 -47668631 - ID_B1 SINE B4 -48 176 13 1 1150 197 108 27 0 chr11 74175811 74175848 -47668008 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 1 1150 281 226 16 31 chr11 74176136 74176200 -47667656 + RLTR28 LTR ERVL 449 511 -13 1 1150 266 251 176 50 chr11 74176994 74177161 -47666695 + MIRb SINE MIR 24 204 -58 1 1150 329 281 127 11 chr11 74177207 74177384 -47666472 - L1M4b LINE L1 -5508 1826 1761 1 1150 597 192 0 0 chr11 74177384 74177504 -47666352 + CT-rich Low_complexity Low_complexity 1 120 0 1 1150 502 299 55 11 chr11 74177512 74177786 -47666070 - L1M4b LINE L1 -5540 1794 1509 1 1150 426 39 0 0 chr11 74177794 74177846 -47666010 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1150 278 306 0 0 chr11 74177856 74177918 -47665938 + ID4 SINE ID 4 65 -18 1 1150 386 321 37 0 chr11 74177950 74178059 -47665797 - PB1 SINE Alu -14 113 1 1 1150 1449 75 5 0 chr11 74179581 74179769 -47664087 + L1_Mus1 LINE L1 6379 6567 0 1 1150 1672 147 11 25 chr11 74179896 74180440 -47663416 - RLTR1C LTR ERV1 0 605 1 1 1150 903 172 112 68 chr11 74180531 74180737 -47663119 + B3 SINE B2 2 216 0 2 1150 237 234 21 0 chr11 74180789 74180836 -47663020 + ID4 SINE ID 4 51 -32 2 1150 322 204 11 11 chr11 74180852 74180946 -47662910 + GA-rich Low_complexity Low_complexity 4 97 0 2 1150 3169 68 8 0 chr11 74181233 74181630 -47662226 + MTB LTR MaLR 1 400 0 2 1150 291 214 274 39 chr11 74181692 74181794 -47662062 + MTEb LTR MaLR 204 329 -50 2 1150 871 294 68 71 chr11 74181794 74182340 -47661516 + L1M4c LINE L1 2758 3307 -3538 2 1150 414 315 91 80 chr11 74182340 74182692 -47661164 - ORR1E LTR MaLR 0 359 4 2 1150 871 294 70 75 chr11 74182692 74182776 -47661080 + L1M4c LINE L1 3308 3394 -3451 2 1150 771 69 0 0 chr11 74182879 74182981 -47660875 + (GGAGA)n Simple_repeat Simple_repeat 5 106 0 2 1150 669 289 38 17 chr11 74182986 74183153 -47660703 + B3A SINE B2 3 164 -34 2 1150 291 28 0 0 chr11 74183153 74183189 -47660667 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1150 427 294 35 94 chr11 74183189 74183224 -47660632 + B2_Mm2 SINE B2 162 193 -2 2 1150 264 143 51 114 chr11 74183212 74183291 -47660565 - MLT1A1 LTR MaLR -50 324 251 2 1150 583 255 238 44 chr11 74183278 74183643 -47660213 - RLTR28B LTR ERVL -41 440 5 2 1150 1021 93 0 0 chr11 74183701 74183841 -47660015 + MTB LTR MaLR 1 140 -260 2 1150 922 60 0 8 chr11 74183832 74183949 -47659907 + MTB LTR MaLR 292 407 0 2 1150 623 273 117 5 chr11 74183949 74184155 -47659701 - MLT1A1 LTR MaLR -173 235 7 2 1150 386 352 35 21 chr11 74184255 74184400 -47659456 - LTR16A LTR ERVL -243 208 62 2 1150 571 200 10 0 chr11 74184466 74184566 -47659290 - PB1D10 SINE Alu -8 109 9 2 1150 267 288 167 17 chr11 74184814 74184934 -47658922 - B3 SINE B2 0 216 79 2 1150 938 149 36 107 chr11 74185801 74185997 -47657859 + MTC LTR MaLR 232 413 -8 2 1150 622 264 216 4 chr11 74186012 74186271 -47657585 - LTR37A LTR ERV1 -108 318 5 2 1150 1130 108 0 11 chr11 74186549 74186727 -47657129 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 2 1151 543 340 172 30 chr11 74186757 74187157 -47656699 + L1MC LINE L1 5355 5811 -2071 2 1151 597 230 8 35 chr11 74187161 74187296 -47656560 + B1F SINE Alu 9 139 -10 2 1151 2376 137 48 41 chr11 74187374 74187786 -47656070 + MTC LTR MaLR 1 415 -6 2 1151 681 158 0 0 chr11 74188164 74188341 -47655515 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 1151 298 93 0 0 chr11 74188344 74188387 -47655469 + (TGGGGG)n Simple_repeat Simple_repeat 6 48 0 2 1151 602 172 0 11 chr11 74188390 74188572 -47655284 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1151 253 266 63 0 chr11 74188648 74188727 -47655129 - B4A SINE B4 -46 246 163 2 1151 462 250 0 0 chr11 74188748 74188844 -47655012 - B4A SINE B4 -194 98 3 2 1151 398 238 0 0 chr11 74188881 74188965 -47654891 - LTR41 LTR ERVL -2 766 683 2 1151 553 239 13 0 chr11 74189863 74190264 -47653592 + (CA)n Simple_repeat Simple_repeat 1 406 0 2 1151 579 198 0 53 chr11 74190437 74190570 -47653286 - RSINE1 SINE B4 -31 134 9 2 1151 446 206 243 0 chr11 74191505 74191612 -47652244 + B1_Mur2 SINE Alu 6 138 -11 2 1151 2013 160 97 8 chr11 74191773 74192145 -47651711 + MTB_Mm LTR MaLR 3 407 0 2 1151 951 279 76 27 chr11 74192588 74192916 -47650940 + MLT2B1 LTR ERVL 22 365 -155 2 1151 413 373 49 28 chr11 74192909 74193196 -47650660 + LTR16B2 LTR ERVL 91 383 -79 2 1151 419 264 190 28 chr11 74193265 74193444 -47650412 - MER31B LTR ERV1 -5 461 254 2 1151 1120 321 106 28 chr11 74194420 74194558 -47649298 + Tigger9b DNA MER2_type 2 137 -487 2 1151 4849 72 38 11 chr11 74194558 74195115 -47648741 + Lx LINE L1 5961 6518 -136 2 1151 189 0 0 0 chr11 74195115 74195136 -47648720 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 2 1151 4849 72 38 11 chr11 74195136 74195237 -47648619 + Lx LINE L1 6519 6636 -18 2 1151 1120 321 106 28 chr11 74195237 74195295 -47648561 + Tigger9b DNA MER2_type 138 191 -433 2 1151 387 0 0 0 chr11 74195295 74195338 -47648518 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1151 1120 321 106 28 chr11 74195338 74195717 -47648139 + Tigger9b DNA MER2_type 192 623 -1 2 1151 274 339 70 21 chr11 74195748 74195967 -47647889 - MIR SINE MIR -4 258 31 2 1151 219 139 0 0 chr11 74196295 74196331 -47647525 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1151 659 299 48 52 chr11 74196561 74196850 -47647006 - B4A SINE B4 0 292 5 2 1151 183 129 0 0 chr11 74198023 74198054 -47645802 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 2 1151 1328 299 62 44 chr11 74202521 74202861 -47640995 + MER63D DNA AcHobo 76 429 -632 2 1151 1014 118 40 79 chr11 74202861 74203063 -47640793 + B2_Mm2 SINE B2 2 195 0 2 1151 1328 299 62 44 chr11 74203063 74203223 -47640633 + MER63D DNA AcHobo 430 585 -476 2 1151 452 361 33 0 chr11 74203244 74203427 -47640429 + MER63D DNA AcHobo 761 949 -112 2 1151 378 129 0 0 chr11 74203487 74203549 -47640307 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1151 186 209 253 55 chr11 74204184 74204275 -47639581 - MIRb SINE MIR -116 152 44 2 1151 412 246 30 67 chr11 74204376 74204511 -47639345 - MER20 DNA MER1_type -84 135 6 2 1151 190 274 57 0 chr11 74205479 74205556 -47638300 + MIRc SINE MIR 79 156 -112 2 1151 2430 49 3 3 chr11 74206199 74206505 -47637351 + MTB LTR MaLR 95 400 0 2 1151 225 0 0 0 chr11 74206796 74206821 -47637035 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 2 1151 180 111 0 0 chr11 74207362 74207389 -47636467 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1151 948 189 61 5 chr11 74207634 74207831 -47636025 - B3 SINE B2 -7 209 2 2 1151 1425 264 97 32 chr11 74207886 74207987 -47635869 - L1MB7 LINE L1 -77 6107 5980 2 1151 180 0 0 0 chr11 74207987 74208007 -47635849 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 2 1151 1425 264 97 32 chr11 74208007 74208521 -47635335 - L1MB7 LINE L1 -205 5979 5453 2 1151 288 53 0 0 chr11 74208540 74208578 -47635278 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1151 673 240 260 9 chr11 74208626 74208849 -47635007 - B4A SINE B4 -12 280 2 2 1151 189 0 0 0 chr11 74208944 74208965 -47634891 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1151 215 303 207 33 chr11 74209655 74209805 -47634051 - MIR3 SINE MIR -9 199 24 2 1151 279 276 49 36 chr11 74209916 74210051 -47633805 + MIR SINE MIR 2 140 -128 2 1151 426 341 42 28 chr11 74210338 74210552 -47633304 + MIRb SINE MIR 26 242 -26 2 1151 207 276 92 58 chr11 74211237 74211356 -47632500 + MIRc SINE MIR 59 185 -91 2 1151 360 0 0 0 chr11 74211393 74211433 -47632423 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1151 315 250 0 42 chr11 74211442 74211513 -47632343 - ID4 SINE ID -13 70 3 2 1151 206 268 80 104 chr11 74212225 74212350 -47631506 + MIR SINE MIR 1 122 -140 2 1151 387 0 0 0 chr11 74212741 74212784 -47631072 + (TCC)n Simple_repeat Simple_repeat 1 43 0 2 1151 208 232 25 148 chr11 74213851 74213932 -47629924 - MIR SINE MIR -139 123 53 2 1151 298 313 130 10 chr11 74213966 74214066 -47629790 + PB1D10 SINE Alu 1 112 -5 2 1151 415 262 59 6 chr11 74214069 74214238 -47629618 + GA-rich Low_complexity Low_complexity 1 178 0 2 1151 350 270 57 85 chr11 74215542 74215825 -47628031 + RMER17A LTR ERVK 316 590 -161 2 1151 225 0 0 0 chr11 74216136 74216161 -47627695 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1151 736 312 72 14 chr11 74217193 74217469 -47626387 + ORSL-2a DNA Tip100 3 294 -48 2 1151 448 270 0 0 chr11 74217657 74217757 -47626099 - PB1D10 SINE Alu -17 100 1 2 1151 229 297 176 0 chr11 74218050 74218141 -47625715 + MIRc SINE MIR 38 144 -124 2 1151 275 395 32 6 chr11 74218303 74218461 -47625395 - MIRb SINE MIR -23 245 84 2 1151 496 259 151 35 chr11 74219853 74220025 -47623831 + RMER30 DNA MER1_type 9 200 -2 2 1151 350 284 72 73 chr11 74220336 74220667 -47623189 + L2b LINE L2 3034 3367 -20 2 1151 182 121 0 29 chr11 74221795 74221829 -47622027 - MIRb SINE MIR -117 151 119 2 1151 204 200 0 0 chr11 74222085 74222130 -47621726 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1151 834 185 0 0 chr11 74223727 74223857 -47619999 + RSINE1 SINE B4 2 131 -34 2 1151 387 60 0 0 chr11 74223857 74223907 -47619949 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1151 288 316 90 26 chr11 74224098 74224254 -47619602 - MIR3 SINE MIR -20 188 23 2 1151 212 0 36 0 chr11 74224553 74224581 -47619275 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1151 330 132 0 0 chr11 74224869 74224922 -47618934 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1151 406 262 0 86 chr11 74225060 74225177 -47618679 - PB1D10 SINE Alu -1 116 10 2 1151 453 140 40 34 chr11 74225385 74225533 -47618323 + CT-rich Low_complexity Low_complexity 3 151 0 2 1151 519 45 0 0 chr11 74226791 74226857 -47616999 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1151 207 0 0 0 chr11 74226997 74227020 -47616836 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1151 266 268 14 0 chr11 74227733 74227744 -47616112 - B4 SINE B4 -206 86 16 2 1151 300 237 0 0 chr11 74227744 74227803 -47616053 - ID4_ SINE ID -9 74 16 2 1151 414 291 0 25 chr11 74228218 74228338 -47615518 + PB1D10 SINE Alu 1 117 0 2 1151 297 284 45 80 chr11 74228819 74229018 -47614838 - MIRb SINE MIR -37 231 40 2 1151 245 188 87 0 chr11 74230048 74230117 -47613739 + L1MD2 LINE L1 5081 5155 -991 2 1151 346 301 65 95 chr11 74230131 74230160 -47613696 + B4 SINE B4 64 224 -65 2 1151 815 190 22 0 chr11 74230160 74230297 -47613559 + B1_Mur2 SINE Alu 10 149 0 2 1151 1164 271 122 43 chr11 74230306 74230518 -47613338 + L1MB7 LINE L1 5424 5670 -514 2 1151 354 61 0 0 chr11 74230518 74230567 -47613289 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1151 1164 271 122 43 chr11 74230567 74230952 -47612904 + L1MB7 LINE L1 5671 6067 -117 2 1151 1256 251 88 35 chr11 74231058 74231567 -47612289 + L1MD2 LINE L1 5283 5818 -424 2 1151 426 226 140 0 chr11 74231576 74231669 -47612187 + PB1D10 SINE Alu 1 106 -11 2 1151 291 295 11 11 chr11 74231676 74231765 -47612091 + GA-rich Low_complexity Low_complexity 3 91 0 2 1151 386 241 153 49 chr11 74231891 74232074 -47611782 + L1MD2 LINE L1 5950 6151 -208 2 1151 205 128 0 49 chr11 74232076 74232117 -47611739 + (CATA)n Simple_repeat Simple_repeat 4 42 0 2 1151 560 298 21 21 chr11 74232132 74232276 -47611580 + RSINE1 SINE B4 2 145 -20 2 1151 716 107 9 0 chr11 74232277 74232389 -47611467 + (TAGA)n Simple_repeat Simple_repeat 1 113 0 3 1151 246 62 0 0 chr11 74232468 74232500 -47611356 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1151 353 263 13 26 chr11 74232589 74232667 -47611189 + ID4 SINE ID 5 81 -2 3 1151 815 78 9 0 chr11 74232849 74232965 -47610891 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 3 1151 501 335 78 5 chr11 74233039 74233243 -47610613 + MER58A DNA MER1_type 3 221 -3 3 1151 191 350 105 42 chr11 74233361 74233504 -47610352 + L2b LINE L2 3189 3340 -35 3 1151 384 267 93 17 chr11 74234462 74234580 -47609276 - MER63B DNA AcHobo -14 422 296 3 1151 827 232 84 1 chr11 74234828 74235073 -47608783 + L1MD3 LINE L1 5604 5853 -2142 3 1151 848 140 32 71 chr11 74235109 74235263 -47608593 + B1_Mur1 SINE Alu 2 149 0 3 1151 217 329 0 24 chr11 74235272 74235356 -47608500 + (TATG)n Simple_repeat Simple_repeat 2 83 0 3 1151 733 220 115 33 chr11 74235605 74235758 -47608098 + B3A SINE B2 1 173 -25 3 1151 195 42 0 0 chr11 74235758 74235782 -47608074 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1151 733 220 115 33 chr11 74235782 74235811 -47608045 + B3A SINE B2 174 198 0 3 1151 186 43 0 0 chr11 74236311 74236334 -47607522 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 1151 345 222 0 0 chr11 74236487 74236586 -47607270 + GA-rich Low_complexity Low_complexity 3 101 0 3 1151 243 395 35 0 chr11 74236642 74236756 -47607100 + MIRm SINE MIR 37 154 -122 3 1151 243 61 0 0 chr11 74236944 74236977 -47606879 + (GCTTG)n Simple_repeat Simple_repeat 3 35 0 3 1151 1117 77 32 0 chr11 74237105 74237261 -47606595 + B2_Mm2 SINE B2 34 194 -1 3 1151 227 305 48 87 chr11 74239307 74239411 -47604445 + LTR36 LTR ERV1 461 560 -51 3 1151 254 333 122 5 chr11 74239994 74240208 -47603648 - L1MEg LINE L1 -2207 3939 3701 3 1151 466 119 0 23 chr11 74240215 74240301 -47603555 + (TCC)n Simple_repeat Simple_repeat 3 86 0 3 1151 217 361 0 27 chr11 74240670 74240744 -47603112 - ID4_ SINE ID -3 80 9 3 1151 509 325 81 26 chr11 74240828 74241480 -47602376 - L1MEg LINE L1 -2998 3148 2461 3 1151 917 189 109 55 chr11 74241620 74241821 -47602035 - B3 SINE B2 -4 212 1 3 1151 236 337 23 0 chr11 74242151 74242237 -47601619 - LTR79 LTR ERVL -431 96 9 3 1151 398 294 87 21 chr11 74242253 74242586 -47601270 - L1MEg LINE L1 -3760 2406 2052 3 1151 432 301 145 38 chr11 74242750 74243091 -47600765 - L1MEg LINE L1 -4305 1861 1473 3 1151 364 217 14 0 chr11 74244584 74244653 -47599203 + ID4_ SINE ID 4 73 -10 3 1151 483 336 54 58 chr11 74244727 74245040 -47598816 - L1M5 LINE L1 -2316 3830 3519 3 1151 564 235 101 0 chr11 74245128 74245247 -47598609 - B3 SINE B2 -85 131 1 3 1151 266 0 29 0 chr11 74245347 74245381 -47598475 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1151 580 277 0 30 chr11 74245400 74245534 -47598322 - ID_B1 SINE B4 -11 213 84 3 1151 1093 223 5 0 chr11 74245959 74246161 -47597695 - B3 SINE B2 -1 215 13 3 1151 321 337 24 52 chr11 74246174 74246387 -47597469 - L1M5 LINE L1 -3202 2944 2738 3 1151 332 304 44 18 chr11 74246406 74246520 -47597336 + L1M LINE L1 5274 5390 -2492 3 1151 407 151 193 23 chr11 74246988 74247076 -47596780 - B1F SINE Alu -46 103 1 3 1151 342 0 0 0 chr11 74247197 74247235 -47596621 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1151 629 211 120 0 chr11 74247321 74247454 -47596402 + B1F SINE Alu 1 149 0 3 1151 879 232 85 89 chr11 74247911 74248144 -47595712 + B4A SINE B4 1 234 -58 3 1151 1196 43 0 0 chr11 74248144 74248282 -47595574 + B1_Mus1 SINE Alu 5 142 -6 3 1151 447 19 0 0 chr11 74248282 74248334 -47595522 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1151 879 232 85 89 chr11 74248334 74248392 -47595464 + B4A SINE B4 235 291 -1 3 1151 311 322 98 72 chr11 74248531 74248725 -47595131 + L2c LINE L2 3188 3386 -1 3 1151 278 167 17 0 chr11 74249419 74249479 -47594377 + (ATGGTG)n Simple_repeat Simple_repeat 6 66 0 3 1151 266 320 266 19 chr11 74249488 74249695 -47594161 - MIRb SINE MIR -2 266 9 3 1151 213 256 231 0 chr11 74251275 74251353 -47592503 + ID_B1 SINE B4 80 175 -49 3 1151 431 289 26 45 chr11 74251974 74252130 -47591726 + MIR SINE MIR 17 169 -93 3 1151 288 296 74 34 chr11 74253089 74253243 -47590613 - MIRb SINE MIR -90 172 18 3 1151 270 292 88 9 chr11 74253267 74253381 -47590475 + MIRc SINE MIR 28 150 -118 3 1151 242 287 188 14 chr11 74254798 74254936 -47588920 - MIRb SINE MIR -58 210 49 3 1151 705 222 80 4 chr11 74256728 74256977 -47586879 + L1MB5 LINE L1 3320 3587 -2559 3 1151 495 214 45 8 chr11 74256985 74257117 -47586739 + L1MB5 LINE L1 5194 5330 -816 3 1151 911 295 53 15 chr11 74257120 74257382 -47586474 + B4A SINE B4 1 272 -20 3 1151 377 319 42 42 chr11 74257791 74257822 -47586034 + B4 SINE B4 60 90 -202 3 1151 686 264 7 0 chr11 74257822 74257970 -47585886 + B1_Mur1 SINE Alu 1 149 0 3 1151 794 251 69 8 chr11 74258007 74258252 -47585604 + L1MB5 LINE L1 5593 5852 -322 3 1151 797 124 8 0 chr11 74258252 74258373 -47585483 - URR1B DNA MER1_type 0 225 104 3 1151 462 312 35 67 chr11 74258380 74258662 -47585194 + L1MB5 LINE L1 5846 6118 -60 3 1151 432 259 0 17 chr11 74259280 74259398 -47584458 + ID_B1 SINE B4 108 223 -1 3 1151 339 206 152 20 chr11 74259459 74259558 -47584298 - RLTR25A LTR ERVK -470 633 522 3 1151 472 208 7 128 chr11 74259470 74259487 -47584369 - MT2B LTR ERVL -319 282 219 3 1151 926 60 0 0 chr11 74259487 74259604 -47584252 - B1_Mus1 SINE Alu -31 117 1 3 1151 472 208 7 128 chr11 74259604 74259619 -47584237 - MT2B LTR ERVL -319 218 152 3 1151 246 193 141 4 chr11 74260137 74260210 -47583646 - MLT1H2 LTR MaLR -12 537 433 3 1151 285 307 24 32 chr11 74260247 74260384 -47583472 - MLT1F LTR MaLR -344 216 78 3 1151 830 280 17 117 chr11 74260449 74260748 -47583108 + B4A SINE B4 7 275 -17 3 1151 477 236 38 103 chr11 74260707 74260752 -47583104 + MT2B LTR ERVL 93 136 -465 3 1151 333 0 0 0 chr11 74260752 74260789 -47583067 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1151 477 236 38 103 chr11 74260789 74260927 -47582929 + MT2B LTR ERVL 137 264 -337 3 1151 1059 47 0 0 chr11 74260821 74260949 -47582907 + B1_Mus1 SINE Alu 8 135 -13 3 1151 1189 65 24 0 chr11 74260950 74261120 -47582736 + (GAAAA)n Simple_repeat Simple_repeat 1 174 0 3 1151 388 100 43 0 chr11 74261130 74261200 -47582656 + (AGGGGG)n Simple_repeat Simple_repeat 5 77 0 3 1151 221 380 107 0 chr11 74261385 74261506 -47582350 + MIRb SINE MIR 126 259 -9 3 1151 248 287 30 69 chr11 74262006 74262107 -47581749 - RMER12 LTR ERVK -487 835 739 3 1151 920 235 21 0 chr11 74262594 74262781 -47581075 - MER2 DNA MER2_type 0 345 155 3 1151 270 0 0 0 chr11 74262844 74262874 -47580982 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1151 297 252 0 2 chr11 74262886 74262951 -47580905 - ID4_ SINE ID -16 67 4 3 1151 553 227 8 70 chr11 74262960 74263088 -47580768 - PB1 SINE Alu -6 121 2 3 1151 384 59 0 0 chr11 74263502 74263553 -47580303 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1151 653 281 99 33 chr11 74263897 74264169 -47579687 + B4A SINE B4 2 291 -1 3 1151 333 206 32 0 chr11 74264176 74264239 -47579617 + HAL1-3A_ME LINE L1 1977 2041 -817 3 1151 253 296 150 20 chr11 74264874 74264974 -47578882 - MER5A DNA MER1_type -34 155 43 3 1151 932 246 164 32 chr11 74265198 74265630 -47578226 + L1M4 LINE L1 3467 3955 -2191 3 1151 2983 243 98 24 chr11 74265635 74266570 -47577286 + Lx8 LINE L1 6309 7313 -160 3 1151 692 279 97 9 chr11 74266570 74266787 -47577069 + B4 SINE B4 38 273 -19 3 1151 676 302 86 58 chr11 74266796 74267377 -47576479 + L1M4 LINE L1 3958 4554 -1592 3 1151 702 283 56 63 chr11 74267392 74267694 -47576162 + ORR1E LTR MaLR 20 319 -40 3 1151 666 249 66 60 chr11 74267882 74268221 -47575635 - L1M3 LINE L1 -563 5605 5251 3 1151 840 186 26 78 chr11 74268221 74268413 -47575443 - B3A SINE B2 -16 182 1 3 1151 353 258 116 49 chr11 74268413 74268508 -47575348 - L1M3 LINE L1 -890 5250 5154 3 1151 721 227 32 50 chr11 74268534 74268752 -47575104 + L1MB5 LINE L1 5955 6168 -6 3 1151 526 273 53 85 chr11 74268802 74268990 -47574866 - Charlie8 DNA MER1_type -2203 225 44 3 1151 416 67 0 16 chr11 74269169 74269230 -47574626 + (TCC)n Simple_repeat Simple_repeat 3 62 0 3 1151 323 283 115 51 chr11 74269358 74269529 -47574327 + L2 LINE L2 2397 2592 -827 3 1151 195 42 0 0 chr11 74269529 74269553 -47574303 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 3 1151 323 283 115 51 chr11 74269553 74269772 -47574084 + L2 LINE L2 2593 2811 -608 3 1151 203 0 37 0 chr11 74270446 74270473 -47573383 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 1151 24 0 0 0 chr11 74271359 74271383 -47572473 + AT_rich Low_complexity Low_complexity 1 24 0 3 1151 252 283 116 54 chr11 74271729 74271886 -47571970 + MIRb SINE MIR 60 229 -39 3 1151 297 250 0 0 chr11 74272742 74272806 -47571050 - MIRc SINE MIR -139 129 66 3 1151 203 277 192 37 chr11 74273295 74273509 -47570347 + MIRb SINE MIR 8 254 -14 3 1151 347 312 44 59 chr11 74273544 74273748 -47570108 - MIRb SINE MIR -9 259 59 3 1151 465 150 0 0 chr11 74273831 74273931 -47569925 + (TC)n Simple_repeat Simple_repeat 1 100 0 3 1151 724 179 13 0 chr11 74274402 74274558 -47569298 + CT-rich Low_complexity Low_complexity 1 158 0 3 1151 403 176 20 108 chr11 74274562 74274586 -47569270 - B1_Mur3 SINE Alu -34 115 96 3 1151 2477 53 3 53 chr11 74274586 74274925 -47568931 - RLTRETN_Mm LTR ERVK 0 322 1 3 1151 403 176 20 108 chr11 74274925 74275002 -47568854 - B1_Mur3 SINE Alu -54 95 23 3 1151 304 328 211 21 chr11 74275003 74275193 -47568663 + MIRc SINE MIR 23 248 -20 3 1151 279 278 145 109 chr11 74275241 74275591 -47568265 + MLT1A1 LTR MaLR 4 408 0 3 1151 847 189 24 73 chr11 74275612 74275818 -47568038 + B3A SINE B2 3 198 0 3 1151 1058 142 0 28 chr11 74277369 74277550 -47566306 + URR1A DNA MER1_type 51 226 0 3 1151 530 209 19 28 chr11 74279032 74279045 -47564811 - PB1D10 SINE Alu -1 116 105 3 1151 216 0 0 0 chr11 74279045 74279069 -47564787 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1151 530 209 19 28 chr11 74279069 74279163 -47564693 - PB1D10 SINE Alu -13 104 10 3 1151 271 202 66 77 chr11 74279089 74279180 -47564676 - MT2B2 LTR ERVL -343 241 152 3 1151 482 188 226 0 chr11 74279826 74279959 -47563897 + RSINE1 SINE B4 3 165 0 3 1151 917 174 208 0 chr11 74280006 74280184 -47563672 + B3 SINE B2 2 216 0 4 1151 2064 169 66 28 chr11 74280459 74280855 -47563001 + MTD LTR MaLR 1 411 -8 4 1151 194 278 0 53 chr11 74280977 74281034 -47562822 + MIRm SINE MIR 171 224 -52 4 1151 403 247 45 0 chr11 74282369 74282458 -47561398 + B1F SINE Alu 20 112 -37 4 1151 538 257 6 6 chr11 74282490 74282666 -47561190 + GA-rich Low_complexity Low_complexity 2 177 0 4 1151 473 255 118 52 chr11 74282678 74282759 -47561097 + ID_B1 SINE B4 8 98 -126 4 1151 365 205 265 0 chr11 74282759 74282842 -47561014 + PB1D10 SINE Alu 1 105 -12 4 1151 751 209 15 0 chr11 74282859 74282993 -47560863 + B1_Mur1 SINE Alu 13 148 -1 4 1151 207 0 0 0 chr11 74282993 74283016 -47560840 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 4 1151 396 0 0 0 chr11 74283079 74283123 -47560733 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1151 567 62 0 0 chr11 74283123 74283202 -47560654 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1151 1222 188 9 18 chr11 74283242 74283459 -47560397 + B3 SINE B2 2 216 0 4 1151 349 349 154 11 chr11 74283956 74284223 -47559633 + MLT1D LTR MaLR 199 503 -2 4 1151 677 205 9 0 chr11 74284319 74284431 -47559425 + ID_B1 SINE B4 81 193 -31 4 1151 1415 207 149 132 chr11 74284431 74284888 -47558968 + MT2A LTR ERVL 1 465 -68 4 1151 234 91 0 0 chr11 74284888 74284921 -47558935 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 4 1151 1123 74 12 0 chr11 74284924 74285087 -47558769 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 4 1151 1415 207 149 132 chr11 74285087 74285149 -47558707 + MT2A LTR ERVL 466 529 -4 4 1151 662 268 39 13 chr11 74285151 74285306 -47558550 + RSINE1 SINE B4 3 161 -4 4 1151 273 57 0 0 chr11 74285621 74285656 -47558200 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1151 203 342 0 51 chr11 74286189 74286306 -47557550 + C-rich Low_complexity Low_complexity 1 111 0 4 1151 699 253 24 12 chr11 74286686 74286866 -47556990 - ID_B1 SINE B4 -27 265 81 4 1151 255 323 69 87 chr11 74286760 74286933 -47556923 - MT2B2 LTR ERVL -322 262 93 4 1151 397 305 131 46 chr11 74286934 74287240 -47556616 + HAL1b LINE L1 1670 2001 -8 4 1151 185 284 72 29 chr11 74287390 74287459 -47556397 - L2b LINE L2 -16 3359 3288 4 1151 837 304 139 3 chr11 74287746 74288069 -47555787 + MLT1A1 LTR MaLR 8 374 -34 4 1151 649 245 82 36 chr11 74288222 74288417 -47555439 + MLT1C LTR MaLR 255 458 -9 4 1151 561 316 8 7 chr11 74289002 74289140 -47554716 + RSINE1 SINE B4 2 140 -152 4 1151 321 26 0 0 chr11 74289140 74289178 -47554678 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1151 207 0 0 0 chr11 74289178 74289200 -47554656 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 4 1151 273 146 0 0 chr11 74290089 74290137 -47553719 + (CCCTAA)n Simple_repeat Simple_repeat 1 48 0 4 1151 237 285 211 0 chr11 74290294 74290417 -47553439 - MIR SINE MIR -101 161 13 4 1151 183 42 0 0 chr11 74290698 74290722 -47553134 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 4 1151 239 0 32 0 chr11 74290723 74290754 -47553102 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 4 1151 1414 170 38 4 chr11 74290811 74291131 -47552725 + MTC LTR MaLR 10 377 -44 4 1151 221 311 179 0 chr11 74291494 74291600 -47552256 + MIR SINE MIR 3 127 -135 4 1151 359 296 23 58 chr11 74291990 74292162 -47551694 + L1M5 LINE L1 5393 5558 -621 4 1151 324 329 43 97 chr11 74292184 74292272 -47551584 + ID SINE ID 2 79 -145 4 1151 453 304 0 34 chr11 74292272 74292391 -47551465 + B1F1 SINE Alu 2 116 -1 4 1151 225 0 0 0 chr11 74292520 74292545 -47551311 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1151 241 330 10 0 chr11 74292548 74292645 -47551211 + L1M5 LINE L1 5718 5815 -629 4 1151 473 237 21 0 chr11 74293859 74293952 -47549904 + B4 SINE B4 1 95 -197 4 1151 723 286 0 6 chr11 74293952 74294117 -47549739 + RSINE1 SINE B4 2 165 0 4 1151 231 204 0 0 chr11 74294117 74294161 -47549695 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1151 542 182 0 167 chr11 74294198 74294330 -47549526 + B4 SINE B4 111 220 -72 4 1151 432 77 0 0 chr11 74294440 74294505 -47549351 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1151 1080 214 14 5 chr11 74294616 74294827 -47549029 + B3 SINE B2 4 216 0 4 1151 241 302 11 11 chr11 74296404 74296491 -47547365 + L2b LINE L2 3075 3161 -214 4 1151 269 294 255 14 chr11 74296725 74296870 -47546986 + MLT1K LTR MaLR 23 202 -393 4 1151 304 286 214 0 chr11 74298649 74298775 -47545081 + MER5A DNA MER1_type 36 188 -1 4 1151 238 245 64 171 chr11 74300006 74300193 -47543663 - LTR33A LTR ERVL -343 177 11 4 1151 644 319 106 54 chr11 74300845 74301289 -47542567 + MLT1C LTR MaLR 1 467 0 4 1151 210 316 13 26 chr11 74302253 74302331 -47541525 + MIRc SINE MIR 19 95 -173 4 1151 600 255 41 77 chr11 74302476 74302646 -47541210 + RSINE1 SINE B4 2 165 0 4 1151 422 316 35 5 chr11 74303087 74303284 -47540572 + L1MB7 LINE L1 5706 5908 -276 4 1151 1187 119 11 6 chr11 74303305 74303482 -47540374 + URR1B DNA MER1_type 46 223 -2 4 1151 510 296 126 9 chr11 74303497 74303712 -47540144 + L1MB7 LINE L1 5926 6165 -19 4 1151 921 152 21 0 chr11 74304313 74304458 -47539398 + B1_Mur3 SINE Alu 1 148 -1 4 1151 606 168 0 0 chr11 74304458 74304571 -47539285 + GA-rich Low_complexity Low_complexity 2 114 0 4 1151 379 313 146 19 chr11 74304762 74304967 -47538889 + MIRb SINE MIR 26 256 -12 4 1151 623 273 40 6 chr11 74306590 74306763 -47537093 - MIR SINE MIR -70 192 14 4 1151 279 326 33 40 chr11 74306884 74307034 -47536822 + MER113 DNA MER1_type 329 477 -44 4 1151 304 266 201 35 chr11 74308408 74308552 -47535304 + HAL1 LINE L1 743 910 -1597 4 1151 1217 68 0 0 chr11 74308573 74308720 -47535136 + B1_Mus1 SINE Alu 2 148 0 4 1151 265 231 25 119 chr11 74308891 74309009 -47534847 + MLT1G LTR MaLR 285 391 -98 4 1151 1001 144 0 0 chr11 74309050 74309189 -47534667 + B1_Mur4 SINE Alu 1 139 -11 4 1151 378 0 0 0 chr11 74309196 74309238 -47534618 + (TAA)n Simple_repeat Simple_repeat 3 44 0 4 1151 368 155 14 0 chr11 74309240 74309311 -47534545 + GA-rich Low_complexity Low_complexity 3 74 0 4 1151 286 281 31 0 chr11 74309323 74309387 -47534469 + MLT1G LTR MaLR 471 536 -55 4 1151 516 327 189 42 chr11 74309390 74309770 -47534086 + HAL1 LINE L1 1263 1698 -809 4 1151 419 311 45 112 chr11 74309793 74310104 -47533752 + HAL1 LINE L1 1881 2170 -337 4 1151 318 300 50 42 chr11 74311115 74311242 -47532614 - MIRb SINE MIR -26 242 108 4 1151 504 170 9 83 chr11 74311471 74311580 -47532276 - PB1D9 SINE Alu -15 105 5 4 1151 896 156 155 11 chr11 74311618 74311799 -47532057 - B3 SINE B2 -7 209 3 4 1151 1440 159 0 4 chr11 74312038 74312265 -47531591 + URR1A DNA MER1_type 1 226 0 4 1151 264 277 31 0 chr11 74312364 74312429 -47531427 - RSINE1 SINE B4 -28 137 71 4 1151 350 283 0 42 chr11 74312463 74312559 -47531297 - RSINE1 SINE B4 -72 93 2 4 1151 457 213 122 81 chr11 74313459 74313495 -47530361 - MER2 DNA MER2_type -96 249 224 4 1151 843 258 13 70 chr11 74313495 74313724 -47530132 - B3 SINE B2 0 216 1 4 1151 457 213 122 81 chr11 74313724 74313835 -47530021 - MER2 DNA MER2_type -122 223 96 4 1151 359 175 33 0 chr11 74313839 74313959 -47529897 + (TG)n Simple_repeat Simple_repeat 2 125 0 4 1151 1075 178 32 0 chr11 74315173 74315358 -47528498 + B3 SINE B2 1 191 -25 4 1151 438 36 0 0 chr11 74315363 74315419 -47528437 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1151 214 338 26 0 chr11 74315654 74315731 -47528125 - L2a LINE L2 -23 3403 3325 4 1151 207 0 0 0 chr11 74315950 74315973 -47527883 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1151 1892 224 36 17 chr11 74315973 74316499 -47527357 + L1MB5 LINE L1 5476 6011 -163 4 1151 572 260 24 0 chr11 74316650 74316777 -47527079 + B1F SINE Alu 20 149 0 4 1151 207 0 0 0 chr11 74317406 74317429 -47526427 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 4 143 2792 161 78 9 chr11 74317522 74318085 -47525771 + Lx9 LINE L1 7043 7644 0 4 1152 1103 176 85 10 chr11 74318284 74318485 -47525371 - B3 SINE B2 0 216 1 4 1152 689 311 46 72 chr11 74318594 74318941 -47524915 - MER2 DNA MER2_type -7 338 1 4 1152 355 370 57 13 chr11 74318976 74319206 -47524650 - L1MC4a LINE L1 -1949 5933 5694 4 1152 387 0 0 0 chr11 74319297 74319340 -47524516 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1152 1008 246 31 0 chr11 74319357 74319585 -47524271 - B4 SINE B4 -14 278 44 4 1152 316 303 31 141 chr11 74320024 74320251 -47523605 + L1ME4a LINE L1 5900 6101 -23 4 1152 305 255 124 8 chr11 74320867 74321004 -47522852 - L1MB2 LINE L1 -86 6085 5939 4 1152 522 361 42 1 chr11 74321024 74321227 -47522629 + MLT1A0 LTR MaLR 1 218 -190 4 1152 896 264 25 0 chr11 74321227 74321428 -47522428 + B3 SINE B2 2 207 -9 4 1152 435 392 55 28 chr11 74321428 74321616 -47522240 + MLT1A0 LTR MaLR 219 407 -1 4 1152 618 199 73 6 chr11 74321635 74321817 -47522039 - L1MB2 LINE L1 -398 5902 5709 4 1152 8084 30 1 1 chr11 74322300 74323233 -47520623 + L1Md_T LINE L1 5650 6582 0 4 1152 989 234 14 0 chr11 74323669 74323878 -47519978 - B3 SINE B2 -4 212 1 4 1152 404 270 35 35 chr11 74323916 74324031 -47519825 + PB1D7 SINE Alu 5 119 -1 4 1152 21 0 0 0 chr11 74325018 74325039 -47518817 + AT_rich Low_complexity Low_complexity 1 21 0 4 1152 320 283 71 64 chr11 74325220 74325440 -47518416 + RLTR21 LTR ERVK 1075 1466 -382 4 1152 629 187 0 0 chr11 74326416 74326523 -47517333 + B1F2 SINE Alu 43 149 0 4 1152 704 232 63 7 chr11 74326537 74326680 -47517176 + B3 SINE B2 8 158 -58 4 1152 531 273 12 53 chr11 74326718 74326888 -47516968 - RSINE1 SINE B4 0 165 3 4 1152 746 262 56 39 chr11 74326925 74327211 -47516645 - B4A SINE B4 0 292 2 4 1152 271 280 118 0 chr11 74327405 74327498 -47516358 - PB1D10 SINE Alu -9 108 5 4 1152 285 240 146 0 chr11 74327532 74327609 -47516247 - ORR1E LTR MaLR -14 365 272 4 1152 305 296 35 116 chr11 74327661 74327833 -47516023 - ORR1E LTR MaLR -105 254 97 4 1152 611 250 0 14 chr11 74327990 74328128 -47515728 - B3 SINE B2 0 216 81 5 1152 412 244 56 16 chr11 74328379 74328504 -47515352 - B1F1 SINE Alu -19 130 1 5 1152 353 111 0 0 chr11 74329272 74329326 -47514530 - B3 SINE B2 0 216 163 5 1152 675 223 53 47 chr11 74329390 74329639 -47514217 - MER113 DNA MER1_type -6 515 31 5 1152 325 315 39 100 chr11 74329766 74329946 -47513910 + MamRep434 DNA TcMar 230 398 -28 5 1152 292 304 36 0 chr11 74330592 74330704 -47513152 - L2 LINE L2 -362 3057 2942 5 1152 501 242 15 26 chr11 74330865 74330992 -47512864 + PB1D10 SINE Alu 7 131 -19 5 1152 211 312 0 0 chr11 74331611 74331659 -47512197 + ID4 SINE ID 9 56 -27 5 1152 325 159 143 0 chr11 74331851 74331914 -47511942 + B3A SINE B2 1 72 -126 5 1152 227 298 0 0 chr11 74331931 74331988 -47511868 - ID4 SINE ID -25 58 2 5 1152 551 277 22 7 chr11 74332002 74332140 -47511716 - B1F1 SINE Alu -9 140 1 5 1152 603 279 0 25 chr11 74332425 74332587 -47511269 + RSINE1 SINE B4 4 161 -4 5 1152 234 0 0 0 chr11 74333903 74333929 -47509927 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1152 507 260 20 14 chr11 74333929 74334077 -47509779 - B1F SINE Alu 0 149 1 5 1152 685 297 83 89 chr11 74334297 74334376 -47509480 - MER113 DNA MER1_type -2 519 442 5 1152 639 205 13 141 chr11 74334376 74334603 -47509253 - B3A SINE B2 0 198 1 5 1152 685 297 83 89 chr11 74334603 74335040 -47508816 - MER113 DNA MER1_type -80 441 6 5 1152 282 208 18 36 chr11 74336026 74336136 -47507720 + (CCCCG)n Simple_repeat Simple_repeat 5 112 0 5 1152 25 51 0 0 chr11 74336301 74336340 -47507516 + GC_rich Low_complexity Low_complexity 1 39 0 5 1152 207 0 0 0 chr11 74338256 74338279 -47505577 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1152 226 299 11 54 chr11 74338892 74338984 -47504872 - MER113 DNA MER1_type -345 176 89 5 1152 203 105 0 50 chr11 74339172 74339212 -47504644 + C-rich Low_complexity Low_complexity 2 39 0 5 1152 944 99 0 7 chr11 74339617 74339760 -47504096 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 5 1152 725 180 60 38 chr11 74339765 74339923 -47503933 + B2_Mm2 SINE B2 1 161 -34 5 1152 572 0 15 0 chr11 74339923 74339991 -47503865 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 5 1152 725 180 60 38 chr11 74339991 74340017 -47503839 + B2_Mm2 SINE B2 162 189 -6 5 1152 228 305 69 99 chr11 74341484 74341615 -47502241 - Tigger15a DNA TcMar -189 526 400 5 1152 287 323 115 16 chr11 74341849 74342041 -47501815 + L1ME2z LINE L1 5676 5886 -558 5 1152 1087 87 0 0 chr11 74342079 74342228 -47501628 + B1_Mur4 SINE Alu 2 150 0 5 1152 204 40 0 0 chr11 74342235 74342260 -47501596 + (ATG)n Simple_repeat Simple_repeat 1 25 0 5 1152 1322 157 118 30 chr11 74342261 74342372 -47501484 - Lx9 LINE L1 -25 7619 7478 5 1152 243 0 0 0 chr11 74342372 74342399 -47501457 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1152 1322 157 118 30 chr11 74342399 74342583 -47501273 - Lx9 LINE L1 -167 7477 7299 5 1152 807 240 63 5 chr11 74342599 74342804 -47501052 - Lx9 LINE L1 -403 7241 7025 5 1152 964 206 66 23 chr11 74342973 74343231 -47500625 + B4A SINE B4 5 273 -19 5 1152 276 149 0 0 chr11 74343254 74343301 -47500555 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1152 730 187 129 31 chr11 74343411 74343604 -47500252 + B3 SINE B2 5 216 0 5 1152 25 0 0 0 chr11 74343765 74343790 -47500066 + AT_rich Low_complexity Low_complexity 1 25 0 5 1152 633 194 73 22 chr11 74343791 74343928 -47499928 + B1_Mur3 SINE Alu 1 144 -5 5 1152 233 102 41 0 chr11 74345605 74345654 -47498202 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 5 1152 441 239 19 18 chr11 74345683 74345795 -47498061 + PB1D9 SINE Alu 1 119 -1 5 1152 494 237 51 10 chr11 74346234 74346372 -47497484 - ID_B1 SINE B4 -56 236 95 5 1152 256 221 14 56 chr11 74346560 74346632 -47497224 + ID4_ SINE ID 5 73 -10 5 1152 1515 192 75 33 chr11 74346882 74346977 -47496879 + MTD LTR MaLR 3 95 -324 5 1152 183 80 0 0 chr11 74346977 74347002 -47496854 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 1152 1515 192 75 33 chr11 74347002 74347266 -47496590 + MTD LTR MaLR 96 377 -42 5 1152 1123 92 92 0 chr11 74347301 74347475 -47496381 + B2_Mm2 SINE B2 6 195 0 5 1152 917 232 31 5 chr11 74347478 74347673 -47496183 - B3 SINE B2 -12 204 5 5 1152 783 173 4 14 chr11 74347677 74347960 -47495896 + (CA)n Simple_repeat Simple_repeat 1 279 0 5 1152 402 256 101 21 chr11 74348096 74348257 -47495599 + MTEa LTR MaLR 230 379 0 5 1152 664 266 7 7 chr11 74348364 74348519 -47495337 + RSINE1 SINE B4 2 156 -9 5 1152 189 74 0 0 chr11 74348519 74348546 -47495310 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1152 415 343 78 16 chr11 74348554 74348797 -47495059 + L1MC3 LINE L1 7497 7754 -31 5 1152 314 248 36 65 chr11 74348797 74348935 -47494921 - MER113 DNA MER1_type -181 340 207 5 1152 759 261 89 20 chr11 74348939 74349142 -47494714 + B4 SINE B4 7 223 -69 5 1152 321 286 9 9 chr11 74349363 74349469 -47494387 + PB1D10 SINE Alu 4 109 -8 5 1152 22 0 0 0 chr11 74349469 74349491 -47494365 + AT_rich Low_complexity Low_complexity 1 22 0 5 1152 892 224 15 5 chr11 74350474 74350680 -47493176 + ID_B1 SINE B4 12 219 -5 5 1152 331 252 31 55 chr11 74351109 74351245 -47492611 + PB1D10 SINE Alu 1 127 0 5 1152 249 33 0 0 chr11 74351343 74351373 -47492483 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1152 581 197 20 81 chr11 74351380 74351529 -47492327 - B1_Mur1 SINE Alu 0 149 10 5 1152 413 396 47 47 chr11 74351529 74351690 -47492166 + B4A SINE B4 60 227 -65 5 1152 1180 80 6 17 chr11 74351690 74351869 -47491987 + (GGAGAA)n Simple_repeat Simple_repeat 4 180 0 5 1152 413 396 47 47 chr11 74351869 74351940 -47491916 + B4A SINE B4 228 292 0 5 1152 525 269 31 0 chr11 74352013 74352143 -47491713 + B1F SINE Alu 16 149 0 5 1152 396 0 0 0 chr11 74353104 74353148 -47490708 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1152 943 289 18 0 chr11 74353298 74353571 -47490285 + B4A SINE B4 2 279 -13 5 1152 2731 25 5 57 chr11 74353678 74354065 -47489791 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1152 5954 112 156 40 chr11 74354065 74355235 -47488621 + IAPEz-int LTR ERVK 8 1313 -5168 5 1152 27902 21 1 2 chr11 74355233 74358511 -47485345 + IAPEz-int LTR ERVK 3209 6481 0 5 1152 2731 25 5 57 chr11 74358511 74358898 -47484958 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1152 716 194 0 16 chr11 74358964 74359090 -47484766 + B1_Mur3 SINE Alu 1 124 -25 5 1152 396 0 0 0 chr11 74359097 74359141 -47484715 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 1152 312 269 128 9 chr11 74359330 74359439 -47484417 + PB1 SINE Alu 4 125 -2 5 1152 821 251 21 55 chr11 74359529 74359765 -47484091 + B4 SINE B4 2 229 -63 5 1152 716 180 183 11 chr11 74359767 74359947 -47483909 + B3 SINE B2 5 215 -1 5 1152 1178 47 0 0 chr11 74359952 74360100 -47483756 + B1_Mus1 SINE Alu 1 148 0 5 1152 423 0 0 0 chr11 74360107 74360154 -47483702 + (GGAAA)n Simple_repeat Simple_repeat 3 49 0 5 1152 278 142 4 0 chr11 74360314 74360362 -47483494 + L1MB1 LINE L1 6125 6174 -15 5 1152 34 0 0 0 chr11 74360393 74360427 -47483429 + AT_rich Low_complexity Low_complexity 1 34 0 5 1152 258 297 27 80 chr11 74361155 74361305 -47482551 + L2a LINE L2 3025 3166 -260 5 1152 447 183 48 12 chr11 74361326 74361409 -47482447 + ID_B1 SINE B4 87 172 -52 5 1152 504 216 0 29 chr11 74362862 74362967 -47480889 - PB1D10 SINE Alu -2 115 14 5 1152 315 0 0 0 chr11 74363420 74363455 -47480401 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1152 678 226 120 38 chr11 74363480 74363664 -47480192 - B3 SINE B2 -16 200 2 5 1152 409 268 18 0 chr11 74363926 74364038 -47479818 + PB1D7 SINE Alu 5 118 -2 5 1152 675 25 0 0 chr11 74364691 74364772 -47479084 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 5 1152 348 286 92 14 chr11 74364782 74364924 -47478932 + L1ME4a LINE L1 5641 5793 -331 5 1152 936 233 14 14 chr11 74365012 74365225 -47478631 - ID_B1 SINE B4 -10 214 2 5 1152 243 0 0 0 chr11 74365288 74365315 -47478541 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1152 271 316 0 0 chr11 74365350 74365426 -47478430 + ID4 SINE ID 7 82 -1 5 1152 363 198 57 47 chr11 74365440 74365546 -47478310 + L1ME4a LINE L1 6014 6120 -4 5 1152 485 255 0 0 chr11 74366210 74366312 -47477544 - MIR SINE MIR -123 139 38 5 1152 791 143 7 22 chr11 74366359 74366495 -47477361 - B1_Mur2 SINE Alu -2 147 14 5 1152 752 321 38 44 chr11 74366541 74366784 -47477072 - MER2 DNA MER2_type -34 311 73 5 1152 721 223 7 0 chr11 74366784 74366923 -47476933 + B1_Mur1 SINE Alu 2 141 -8 5 1152 752 321 38 44 chr11 74366923 74366972 -47476884 - MER2 DNA MER2_type -273 72 22 5 1152 751 230 76 120 chr11 74367024 74367101 -47476755 + B4A SINE B4 5 85 -207 5 1152 234 0 0 0 chr11 74367101 74367127 -47476729 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1152 751 230 76 120 chr11 74367127 74367350 -47476506 + B4A SINE B4 86 291 -1 5 1152 232 276 0 0 chr11 74367527 74367585 -47476271 + L1M3 LINE L1 5821 5878 -305 5 1152 738 245 16 24 chr11 74367750 74367940 -47475916 + ID_B1 SINE B4 54 245 -47 5 1152 258 156 0 0 chr11 74367940 74367985 -47475871 + GA-rich Low_complexity Low_complexity 2 46 0 5 1152 23 0 0 0 chr11 74367995 74368018 -47475838 + AT_rich Low_complexity Low_complexity 1 23 0 5 1152 253 278 28 0 chr11 74368059 74368131 -47475725 + ID4_ SINE ID 4 77 -6 5 1152 435 19 0 0 chr11 74368463 74368515 -47475341 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1152 336 325 66 7 chr11 74368700 74368852 -47475004 - MIRb SINE MIR -30 238 78 5 1152 793 114 38 0 chr11 74368924 74369055 -47474801 + B1_Mur4 SINE Alu 15 150 0 5 1152 1213 183 5 5 chr11 74369074 74369288 -47474568 - B3 SINE B2 -2 214 1 5 1152 251 271 135 0 chr11 74370071 74370167 -47473689 - MIRb SINE MIR -125 143 35 5 1152 333 284 19 10 chr11 74370256 74370359 -47473497 + MER20 DNA MER1_type 54 157 -62 5 1152 513 167 17 34 chr11 74370619 74370737 -47473119 - PB1D10 SINE Alu -1 116 1 5 1152 283 291 0 0 chr11 74371466 74371545 -47472311 + PB1D10 SINE Alu 27 105 -12 5 1152 253 333 100 28 chr11 74371633 74371883 -47471973 + L3 LINE CR1 4113 4380 -109 6 1152 474 49 0 0 chr11 74372756 74372817 -47471039 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1152 180 77 0 0 chr11 74374334 74374360 -47469496 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1152 652 244 22 0 chr11 74374362 74374497 -47469359 + B1_Mur1 SINE Alu 6 143 -6 6 1152 349 325 94 44 chr11 74374510 74374713 -47469143 + LTR86A1 LTR ERVL 232 444 -69 6 1152 1071 181 19 5 chr11 74374908 74375114 -47468742 - B3 SINE B2 0 216 8 6 1152 315 286 5 59 chr11 74375454 74375640 -47468216 + C-rich Low_complexity Low_complexity 1 176 0 6 1152 244 300 14 0 chr11 74375900 74375970 -47467886 + ID2 SINE ID 8 78 -5 6 1152 201 286 275 8 chr11 74376021 74376141 -47467715 - MIR3 SINE MIR -41 167 16 6 1152 269 347 34 27 chr11 74376407 74376555 -47467301 + MIR SINE MIR 34 182 -80 6 1152 273 292 56 96 chr11 74376977 74377010 -47466846 - YREP_Mm Unknown Unknown -1456 356 241 6 1152 652 188 19 65 chr11 74377010 74377098 -47466758 + ID_B1 SINE B4 78 167 -57 6 1152 3630 118 9 19 chr11 74377098 74377668 -47466188 + RLTR12A LTR ERVK 1 564 -4 6 1152 273 292 56 96 chr11 74377668 74377724 -47466132 - YREP_Mm Unknown Unknown -1572 240 186 6 1152 652 204 32 72 chr11 74377724 74377754 -47466102 + ID_B1 SINE B4 168 250 -42 6 1152 368 306 117 56 chr11 74377758 74378007 -47465849 - L1MB5 LINE L1 -50 6134 5871 6 1152 231 167 75 15 chr11 74378039 74378106 -47465750 - L1M4 LINE L1 -1390 4756 4686 6 1152 368 242 60 126 chr11 74378235 74378386 -47465470 - ID_B1 SINE B4 -2 222 82 6 1152 215 308 15 0 chr11 74378760 74378825 -47465031 + PB1 SINE Alu 14 79 -48 6 1152 484 306 52 6 chr11 74379047 74379221 -47464635 + RMER15 LTR ERVL 392 573 -2 6 1152 839 234 5 26 chr11 74379279 74379472 -47464384 + B3A SINE B2 2 190 -8 6 1152 439 259 96 0 chr11 74379487 74379622 -47464234 + RSINE1 SINE B4 1 148 -17 6 1152 299 202 22 132 chr11 74379659 74379750 -47464106 + ID4 SINE ID 3 83 0 6 1152 856 216 60 0 chr11 74380102 74380301 -47463555 + B3 SINE B2 1 211 -5 6 1152 755 276 14 19 chr11 74380914 74381121 -47462735 + MTD LTR MaLR 5 210 -209 6 1152 592 281 20 50 chr11 74381121 74381323 -47462533 + B3A SINE B2 2 197 -1 6 1152 1115 58 0 0 chr11 74381329 74381468 -47462388 + B1_Mm SINE Alu 2 140 -7 6 1152 213 39 0 0 chr11 74381510 74381536 -47462320 + (CCTG)n Simple_repeat Simple_repeat 1 26 0 6 1152 395 172 0 0 chr11 74381563 74381627 -47462229 - MERVL-int LTR ERVL -968 4517 4454 6 1152 276 200 45 15 chr11 74381669 74381735 -47462121 + MTD LTR MaLR 312 379 0 6 1152 561 181 232 0 chr11 74381818 74381956 -47461900 - URR1B DNA MER1_type -55 170 1 6 1152 229 375 17 17 chr11 74382525 74382704 -47461152 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 6 1152 709 255 18 66 chr11 74383936 74384163 -47459693 + B4 SINE B4 3 218 -74 6 1152 217 319 0 0 chr11 74385768 74385840 -47458016 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1152 195 69 0 0 chr11 74386629 74386658 -47457198 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1152 265 288 0 12 chr11 74386687 74386768 -47457088 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1152 426 53 0 0 chr11 74387856 74387913 -47455943 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1152 908 258 94 53 chr11 74387932 74388198 -47455658 - B4 SINE B4 -12 280 4 6 1152 203 138 0 0 chr11 74388277 74388306 -47455550 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 6 1152 193 125 77 138 chr11 74388345 74388410 -47455446 - L3 LINE CR1 -2319 2170 2110 6 1152 298 294 135 11 chr11 74389226 74389413 -47454443 + MIRb SINE MIR 8 223 -45 6 1152 207 0 0 0 chr11 74389922 74389945 -47453911 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1152 712 105 0 0 chr11 74390210 74390305 -47453551 - B1_Mus1 SINE Alu -28 120 26 6 1152 296 238 19 0 chr11 74391058 74391137 -47452719 + PB1D10 SINE Alu 18 100 -20 6 1152 464 242 10 39 chr11 74391148 74391251 -47452605 + PB1D7 SINE Alu 21 120 0 6 1152 636 242 0 0 chr11 74391264 74391388 -47452468 + ID_B1 SINE B4 96 219 -5 6 1152 1204 84 4 159 chr11 74391412 74391639 -47452217 + B2_Mm1t SINE B2 2 193 0 6 1152 348 188 0 0 chr11 74391667 74391736 -47452120 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1152 603 198 80 32 chr11 74391780 74391905 -47451951 - B1_Mur3 SINE Alu -5 144 14 6 1152 331 278 73 113 chr11 74391905 74391928 -47451928 - ID_B1 SINE B4 -3 219 78 6 1152 369 0 0 0 chr11 74392119 74392160 -47451696 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1152 522 255 155 13 chr11 74392267 74392422 -47451434 - B4 SINE B4 -114 178 2 6 1152 441 296 0 0 chr11 74392430 74392528 -47451328 - PB1D7 SINE Alu -6 114 17 6 1152 497 212 48 48 chr11 74392817 74392941 -47450915 + PB1 SINE Alu 2 125 -2 6 1152 735 214 0 0 chr11 74392997 74393128 -47450728 + B1_Mur1 SINE Alu 19 149 0 6 1152 357 82 0 0 chr11 74393128 74393177 -47450679 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1152 323 278 0 18 chr11 74393242 74393352 -47450504 + L1ME3A LINE L1 6058 6165 -8 6 1152 402 332 4 116 chr11 74393913 74394042 -47449814 + MIR SINE MIR 46 153 -109 6 1152 1232 109 33 0 chr11 74394042 74394226 -47449630 + B2_Mm2 SINE B2 2 191 -4 6 1152 402 332 4 116 chr11 74394226 74394328 -47449528 + MIR SINE MIR 154 251 -11 6 1152 504 259 50 29 chr11 74394351 74394490 -47449366 + B1F SINE Alu 2 143 -6 6 1152 1223 68 0 0 chr11 74394683 74394830 -47449026 + B1_Mus2 SINE Alu 1 147 0 6 1152 513 163 0 0 chr11 74394834 74394926 -47448930 + GA-rich Low_complexity Low_complexity 20 111 0 6 1152 327 25 0 0 chr11 74395098 74395138 -47448718 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1152 1559 58 0 0 chr11 74395138 74395328 -47448528 - B2_Mm1t SINE B2 -2 191 2 6 1152 248 197 221 13 chr11 74395580 74395657 -47448199 - PB1 SINE Alu -2 125 33 6 1152 501 216 17 35 chr11 74395669 74395784 -47448072 - PB1D10 SINE Alu -1 116 4 6 1152 226 316 132 0 chr11 74395861 74395975 -47447881 + Tigger5 DNA MER2_type 892 1020 -1386 6 1152 331 279 0 12 chr11 74396428 74396508 -47447348 + ID2 SINE ID 3 81 -2 6 1152 497 225 0 11 chr11 74396526 74396616 -47447240 + ID_B1 SINE B4 132 220 -4 6 1152 372 259 9 36 chr11 74396616 74396728 -47447128 + GA-rich Low_complexity Low_complexity 1 109 0 6 1152 335 233 68 9 chr11 74396862 74396970 -47446886 - MIR SINE MIR -89 187 66 6 1152 513 305 128 19 chr11 74396996 74397331 -47446525 + MLT1G1 LTR MaLR 167 533 -46 6 1152 198 304 87 0 chr11 74397372 74397441 -47446415 - MIR SINE MIR -187 75 1 6 1152 216 67 0 0 chr11 74397589 74397619 -47446237 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 1152 231 36 0 0 chr11 74398775 74398803 -47445053 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1152 238 289 0 0 chr11 74399212 74399264 -47444592 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1152 423 271 47 0 chr11 74400491 74400598 -47443258 + PB1D10 SINE Alu 1 112 -5 6 1152 211 324 28 14 chr11 74400612 74400684 -47443172 + B4A SINE B4 83 155 -137 6 1152 363 179 213 11 chr11 74400620 74400715 -47443141 + PB1D10 SINE Alu 7 125 -2 6 1152 625 214 128 0 chr11 74400718 74400835 -47443021 + B1_Mur3 SINE Alu 1 132 -17 6 1152 1267 35 0 0 chr11 74400848 74400992 -47442864 - B1_Mus1 SINE Alu 0 148 5 6 1152 438 20 0 0 chr11 74401028 74401079 -47442777 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1152 220 191 64 0 chr11 74401091 74401138 -47442718 - MIRc SINE MIR -129 139 90 6 1152 535 365 122 6 chr11 74401139 74401492 -47442364 + LTR16E2 LTR ERVL 1 394 -174 6 1152 275 49 24 0 chr11 74401836 74401877 -47441979 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 6 1152 649 219 2 38 chr11 74401890 74402023 -47441833 - PB1D7 SINE Alu -9 141 6 6 1152 363 169 0 0 chr11 74403134 74403205 -47440651 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1152 202 245 194 10 chr11 74404286 74404389 -47439467 - L3 LINE CR1 -108 4381 4260 6 1152 576 265 58 32 chr11 74404993 74405149 -47438707 + RSINE1 SINE B4 4 163 -2 6 1152 230 254 0 0 chr11 74405176 74405239 -47438617 + A-rich Low_complexity Low_complexity 1 63 0 6 1152 282 224 45 109 chr11 74405380 74405490 -47438366 - Tigger7 DNA MER2_type 0 2491 2389 6 1152 572 157 108 0 chr11 74405505 74405607 -47438249 + B1_Mur1 SINE Alu 21 133 -16 6 1152 881 203 94 20 chr11 74405615 74405816 -47438040 + B3 SINE B2 1 216 0 6 1152 847 244 143 37 chr11 74405832 74406207 -47437649 + MER47B DNA MER2_type 1 418 0 6 1152 1227 286 90 42 chr11 74406225 74406626 -47437230 - Tigger7 DNA MER2_type -2071 420 1 6 1152 215 373 85 23 chr11 74407231 74407360 -47436496 + MIR SINE MIR 112 248 -14 6 1152 382 280 0 78 chr11 74407382 74407498 -47436358 + PB1D10 SINE Alu 3 109 -8 6 1152 729 255 30 86 chr11 74407512 74407744 -47436112 + ID_B1 SINE B4 2 220 -4 6 1152 318 132 0 0 chr11 74407745 74407798 -47436058 + (TAA)n Simple_repeat Simple_repeat 1 53 0 6 1152 211 307 8 123 chr11 74408159 74408289 -47435567 - L2c LINE L2 -19 3368 3254 6 1152 1119 181 45 0 chr11 74408525 74408724 -47435132 - B3 SINE B2 -7 209 2 6 1152 436 276 12 67 chr11 74408765 74408938 -47434918 + B3 SINE B2 15 183 -12 6 1152 353 203 252 20 chr11 74408938 74409050 -47434806 + B3 SINE B2 94 208 -8 6 1152 751 112 0 63 chr11 74409082 74409273 -47434583 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1152 528 213 65 82 chr11 74409273 74409307 -47434549 - B3A SINE B2 -16 182 152 6 1152 1094 68 0 21 chr11 74409307 74409491 -47434365 + (TG)n Simple_repeat Simple_repeat 1 184 -59 6 1152 1094 68 0 21 chr11 74409499 74409556 -47434300 + (TG)n Simple_repeat Simple_repeat 185 243 0 6 1152 528 213 65 82 chr11 74409556 74409696 -47434160 - B3A SINE B2 -51 147 2 6 1152 544 271 32 19 chr11 74409731 74409885 -47433971 - RSINE1 SINE B4 -8 157 2 7 1152 868 199 7 0 chr11 74410197 74410343 -47433513 + B1_Mur1 SINE Alu 2 148 -1 7 1152 304 342 52 9 chr11 74410641 74410756 -47433100 + L3 LINE CR1 4248 4367 -122 7 1152 572 83 37 0 chr11 74411061 74411170 -47432686 + (CA)n Simple_repeat Simple_repeat 2 114 0 7 1152 287 312 15 53 chr11 74411385 74411517 -47432339 - L1MC LINE L1 -2005 5877 5751 7 1152 1050 217 29 5 chr11 74411574 74411782 -47432074 - B3 SINE B2 0 216 4 7 1152 608 230 89 0 chr11 74411992 74412127 -47431729 - B1F2 SINE Alu 0 149 3 7 1152 239 283 245 0 chr11 74412199 74412305 -47431551 - MLT1A0 LTR MaLR -69 296 165 7 1152 534 273 14 41 chr11 74412344 74412489 -47431367 + RSINE1 SINE B4 4 144 -21 7 1152 192 40 0 0 chr11 74412551 74412576 -47431280 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1152 3399 43 2 0 chr11 74412604 74412999 -47430857 - MTA_Mm LTR MaLR 0 396 1 7 1152 825 149 30 7 chr11 74412999 74413134 -47430722 + B1_Mus2 SINE Alu 3 140 -7 7 1152 1171 214 5 0 chr11 74413164 74413374 -47430482 - ID_B1 SINE B4 -13 211 1 7 1152 457 246 67 47 chr11 74413376 74413525 -47430331 - MLT1A0 LTR MaLR -213 152 1 7 1152 805 207 21 0 chr11 74415074 74415219 -47428637 - B1_Mur4 SINE Alu -1 149 2 7 1152 237 83 0 0 chr11 74415238 74415274 -47428582 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1152 304 339 16 31 chr11 74415274 74415402 -47428454 - ID_B1 SINE B4 -9 215 90 7 1152 2225 81 97 0 chr11 74416078 74416376 -47427480 - ORR1A2 LTR MaLR 0 327 1 7 1152 272 78 0 38 chr11 74416379 74416432 -47427424 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 7 1152 237 302 79 0 chr11 74416456 74416519 -47427337 - ID2 SINE ID -13 70 3 7 1152 754 256 28 17 chr11 74416569 74416748 -47427108 + B3A SINE B2 1 181 -17 7 1152 459 0 0 0 chr11 74416764 74416815 -47427041 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 7 1152 844 88 25 6 chr11 74416834 74416980 -47426876 + B1_Mur3 SINE Alu 2 146 -2 7 1152 393 184 148 11 chr11 74417011 74417099 -47426757 + RSINE1 SINE B4 12 111 -54 7 1152 1136 278 54 11 chr11 74417212 74417562 -47426294 + MLT1A0 LTR MaLR 1 365 0 7 1152 822 48 0 0 chr11 74417955 74418058 -47425798 + (TTGG)n Simple_repeat Simple_repeat 2 104 0 7 1152 254 314 74 30 chr11 74418129 74418394 -47425462 + RSINE1 SINE B4 2 274 -18 7 1152 759 191 0 72 chr11 74418457 74418609 -47425247 + B1_Mus2 SINE Alu 1 141 -6 7 1152 1311 105 10 30 chr11 74418621 74418818 -47425038 + B2_Mm1t SINE B2 1 193 0 7 1152 889 172 0 11 chr11 74418818 74419000 -47424856 + GA-rich Low_complexity Low_complexity 1 180 0 7 1152 922 177 0 0 chr11 74419351 74419498 -47424358 - B1_Mur1 SINE Alu -1 148 2 7 1152 569 110 11 0 chr11 74419604 74419695 -47424161 + (TTTC)n Simple_repeat Simple_repeat 4 95 0 7 1152 846 164 0 22 chr11 74419700 74419837 -47424019 - B1_Mus2 SINE Alu -9 138 5 7 1152 236 376 18 9 chr11 74419926 74420011 -47423845 + PB1D10 SINE Alu 1 87 -30 7 1152 815 199 108 20 chr11 74420011 74420206 -47423650 + B3 SINE B2 2 213 -3 7 1152 236 376 18 9 chr11 74420206 74420230 -47423626 + PB1D10 SINE Alu 88 111 -6 7 1152 844 172 0 0 chr11 74420232 74420366 -47423490 + B1_Mur2 SINE Alu 8 141 -8 7 1152 1269 47 0 0 chr11 74420399 74420547 -47423309 + B1_Mus1 SINE Alu 1 148 0 7 1152 198 0 0 0 chr11 74420547 74420569 -47423287 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1152 442 231 63 40 chr11 74420622 74420748 -47423108 + B2_Mm2 SINE B2 48 176 -19 7 1152 931 181 161 9 chr11 74420766 74420989 -47422867 + B4A SINE B4 3 259 -33 7 1152 225 0 0 0 chr11 74420997 74421022 -47422834 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 7 1152 289 274 13 40 chr11 74421063 74421139 -47422717 + B4A SINE B4 82 155 -137 7 1152 2710 30 6 29 chr11 74421131 74421477 -47422379 - ORR1A1 LTR MaLR -8 338 1 7 1152 359 292 0 0 chr11 74421517 74421606 -47422250 + ID_B1 SINE B4 124 212 -12 7 1152 622 245 164 65 chr11 74421640 74421841 -47422015 + B4 SINE B4 52 272 -20 7 1152 613 230 9 0 chr11 74421802 74421915 -47421941 + B3 SINE B2 103 216 0 7 1152 226 280 11 157 chr11 74421931 74421946 -47421910 + B4 SINE B4 211 225 -67 7 1152 3322 29 39 0 chr11 74421946 74422327 -47421529 - MTA_Mm LTR MaLR 0 396 1 7 1152 226 280 11 157 chr11 74422327 74422400 -47421456 + B4 SINE B4 226 286 -6 7 1152 333 0 0 0 chr11 74422405 74422442 -47421414 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1152 712 239 31 12 chr11 74422489 74422650 -47421206 + RSINE1 SINE B4 2 165 0 7 1152 351 0 0 0 chr11 74422733 74422772 -47421084 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1152 332 284 12 0 chr11 74422779 74422860 -47420996 - B3 SINE B2 -54 162 81 7 1152 206 128 0 25 chr11 74422996 74423036 -47420820 + CT-rich Low_complexity Low_complexity 2 40 0 7 1152 207 0 0 0 chr11 74423036 74423059 -47420797 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1152 937 89 0 0 chr11 74423059 74423183 -47420673 - B1_Mus1 SINE Alu -23 125 2 7 1152 402 21 0 0 chr11 74423184 74423231 -47420625 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 7 1152 1330 74 28 0 chr11 74423232 74423408 -47420448 - B2_Mm2 SINE B2 -14 181 1 7 1152 188 240 0 39 chr11 74423415 74423467 -47420389 + MIRm SINE MIR 82 131 -145 7 1152 23 0 0 0 chr11 74424379 74424402 -47419454 + GC_rich Low_complexity Low_complexity 1 23 0 7 1152 213 143 24 0 chr11 74424753 74424795 -47419061 + A-rich Low_complexity Low_complexity 2 44 0 7 1152 373 274 47 39 chr11 74425056 74425185 -47418671 + B1F SINE Alu 1 130 -19 7 1152 501 256 34 0 chr11 74425082 74425199 -47418657 + ID_B1 SINE B4 103 223 -1 7 1152 189 0 0 0 chr11 74425206 74425227 -47418629 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7 1152 461 261 63 0 chr11 74425325 74425436 -47418420 - PB1D7 SINE Alu 0 120 3 7 1152 265 261 20 89 chr11 74425357 74425458 -47418398 - B4 SINE B4 -125 167 74 7 1152 554 249 174 42 chr11 74425572 74425769 -47418087 + ID_B1 SINE B4 7 246 -46 7 1152 704 71 0 10 chr11 74425778 74425878 -47417978 + (GGA)n Simple_repeat Simple_repeat 1 99 0 7 1152 577 196 62 0 chr11 74425891 74426003 -47417853 + PB1D9 SINE Alu 1 119 -1 7 1152 600 134 0 0 chr11 74426334 74426431 -47417425 + (GA)n Simple_repeat Simple_repeat 2 98 0 7 1152 558 216 36 29 chr11 74426577 74426715 -47417141 + B1F SINE Alu 2 140 -9 7 1152 885 259 14 18 chr11 74426721 74426941 -47416915 + ID_B1 SINE B4 2 220 -4 7 1152 585 275 51 52 chr11 74427010 74427269 -47416587 + B4A SINE B4 26 292 0 7 1152 283 167 48 32 chr11 74427415 74427477 -47416379 + B4A SINE B4 184 246 -46 7 1152 840 196 13 25 chr11 74427472 74427629 -47416227 + B2_Mm2 SINE B2 7 161 -34 7 1152 291 54 0 0 chr11 74427633 74427670 -47416186 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 7 1152 229 246 30 76 chr11 74427671 74427737 -47416119 + B4A SINE B4 212 274 -18 7 1152 527 297 141 35 chr11 74427874 74428215 -47415641 - RMER15 LTR ERVL -43 532 28 7 1152 430 210 0 12 chr11 74428326 74428431 -47415425 + ID4 SINE ID 12 112 -40 7 1152 214 229 20 20 chr11 74428489 74428538 -47415318 + PB1D9 SINE Alu 10 58 -62 7 1152 365 246 57 33 chr11 74428972 74429094 -47414762 + HAL1-2a_MD LINE L1 2405 2529 -495 7 1152 222 375 104 18 chr11 74429262 74429425 -47414431 + MIRb SINE MIR 47 223 -45 7 1152 378 42 0 0 chr11 74430104 74430152 -47413704 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1152 225 0 0 0 chr11 74430152 74430176 -47413680 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1152 1140 175 48 0 chr11 74430218 74430257 -47413599 - B3 SINE B2 0 216 169 7 1152 207 0 0 0 chr11 74430257 74430280 -47413576 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 7 1152 1140 175 48 0 chr11 74430280 74430446 -47413410 - B3 SINE B2 -48 168 2 7 1152 1270 184 34 0 chr11 74430453 74430660 -47413196 - B3 SINE B2 0 216 3 7 1152 1190 74 0 0 chr11 74430709 74430857 -47412999 - B1_Mus1 SINE Alu 0 148 1 7 1152 322 297 44 26 chr11 74430923 74431037 -47412819 + PB1D7 SINE Alu 5 120 0 7 1152 655 234 44 0 chr11 74431549 74431686 -47412170 + B1F1 SINE Alu 1 143 -6 7 1152 585 198 17 35 chr11 74431726 74431841 -47412015 + B1_Mur3 SINE Alu 10 122 -27 7 1152 1316 20 0 0 chr11 74431869 74432016 -47411840 - B1_Mus2 SINE Alu 0 147 1 7 1152 334 158 0 0 chr11 74432270 74432327 -47411529 - MIR SINE MIR -41 221 165 7 1152 870 62 0 0 chr11 74432430 74432543 -47411313 + (GGA)n Simple_repeat Simple_repeat 3 115 0 7 1152 248 180 0 91 chr11 74432641 74432696 -47411160 - MIR SINE MIR -95 113 64 7 1152 317 299 0 0 chr11 74432994 74433101 -47410755 + C-rich Low_complexity Low_complexity 1 107 0 7 1152 22 0 0 0 chr11 74433310 74433332 -47410524 + GC_rich Low_complexity Low_complexity 1 22 0 7 1152 190 312 154 14 chr11 74434368 74434511 -47409345 + MIR SINE MIR 79 241 -21 7 1152 616 230 0 8 chr11 74435073 74435200 -47408656 + B1F SINE Alu 5 130 -19 7 1152 292 292 24 110 chr11 74435348 74435475 -47408381 + RSINE1 SINE B4 50 165 0 7 1152 505 250 0 62 chr11 74435540 74435668 -47408188 + PB1D9 SINE Alu 1 120 0 7 1152 591 313 6 52 chr11 74435987 74436159 -47407697 + RSINE1 SINE B4 2 165 0 7 1152 22 0 0 0 chr11 74436161 74436183 -47407673 + AT_rich Low_complexity Low_complexity 1 22 0 7 1152 242 309 46 9 chr11 74436249 74436357 -47407499 + MamRep564 Unknown Unknown 68 179 -178 7 1152 215 55 0 53 chr11 74436442 74436480 -47407376 + (GTTTG)n Simple_repeat Simple_repeat 5 40 0 8 1152 735 179 43 0 chr11 74436491 74436631 -47407225 - B1_Mur4 SINE Alu 0 150 5 8 1152 640 287 0 0 chr11 74436698 74436841 -47407015 - RSINE1 SINE B4 -20 145 3 8 1152 219 69 0 0 chr11 74436853 74436882 -47406974 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1152 717 78 0 0 chr11 74437750 74437840 -47406016 + B1_Mus2 SINE Alu 47 136 -11 8 1152 351 309 57 8 chr11 74437990 74438114 -47405742 - L2a LINE L2 -19 3407 3278 8 1152 278 250 44 22 chr11 74438491 74438520 -47405336 + ORR1B1-int LTR MaLR 617 648 -861 8 1152 907 164 7 20 chr11 74438520 74438669 -47405187 + B1_Mus2 SINE Alu 1 147 0 8 1152 278 345 176 0 chr11 74438692 74438834 -47405022 + B3 SINE B2 4 170 -46 8 1152 211 256 152 56 chr11 74439099 74439277 -47404579 - L2a LINE L2 -555 2864 2670 8 1152 251 330 125 0 chr11 74439287 74439375 -47404481 - PB1 SINE Alu -20 107 9 8 1152 438 366 0 0 chr11 74439410 74439574 -47404282 + Lx8 LINE L1 7169 7332 -141 8 1152 23 54 0 0 chr11 74439622 74439659 -47404197 + AT_rich Low_complexity Low_complexity 1 37 0 8 1152 655 179 51 8 chr11 74439678 74439796 -47404060 + B1_Mur2 SINE Alu 18 140 -9 8 1152 243 0 0 0 chr11 74439796 74439823 -47404033 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1152 1014 74 0 22 chr11 74439828 74439966 -47403890 + B1_Mus1 SINE Alu 8 142 -6 8 1152 411 283 28 0 chr11 74439987 74440093 -47403763 + RSINE1 SINE B4 8 116 -49 8 1152 1381 59 26 26 chr11 74440140 74440332 -47403524 - B2_Mm2 SINE B2 -2 193 2 8 1152 386 235 97 10 chr11 74440432 74440535 -47403321 - MLT1E1 LTR MaLR -398 256 145 8 1152 663 176 8 8 chr11 74440584 74440704 -47403152 - PB1D9 SINE Alu 0 120 1 8 1152 372 43 0 0 chr11 74440765 74440811 -47403045 + (CGGA)n Simple_repeat Simple_repeat 3 48 0 8 1152 1278 34 0 0 chr11 74440829 74440976 -47402880 + B1_Mus2 SINE Alu 1 147 0 8 1152 616 231 7 29 chr11 74441106 74441244 -47402612 - ID_B1 SINE B4 0 224 90 8 1152 475 224 21 40 chr11 74441329 74441452 -47402404 - B3 SINE B2 -25 191 2 8 1152 233 349 19 19 chr11 74441457 74441565 -47402291 - MIRb SINE MIR -114 154 47 8 1152 388 308 5 43 chr11 74441604 74441752 -47402104 + PB1 SINE Alu 16 148 -1 8 1152 670 205 78 8 chr11 74442182 74442310 -47401546 + B1_Mur2 SINE Alu 1 137 -12 8 1152 262 291 48 48 chr11 74442324 74442407 -47401449 + ID2 SINE ID 1 83 0 8 1152 229 304 25 25 chr11 74442434 74442515 -47401341 + B4A SINE B4 74 154 -138 8 1152 353 278 100 30 chr11 74442460 74442560 -47401296 + B1F1 SINE Alu 16 122 -27 8 1152 325 333 0 28 chr11 74442894 74443002 -47400854 + PB1D10 SINE Alu 1 105 -12 8 1152 219 284 143 31 chr11 74443051 74443149 -47400707 - MIR3 SINE MIR -27 181 73 8 1152 1454 58 0 36 chr11 74443762 74443958 -47399898 + B2_Mm2 SINE B2 2 190 -5 8 1152 297 304 30 71 chr11 74443988 74444087 -47399769 + B1F2 SINE Alu 1 95 -54 8 1152 225 196 39 0 chr11 74444044 74444095 -47399761 + ID_B1 SINE B4 160 212 -12 8 1152 351 224 26 26 chr11 74444265 74444343 -47399513 + ID4 SINE ID 2 79 -4 8 1152 884 163 0 20 chr11 74444363 74444513 -47399343 + B1_Mur3 SINE Alu 1 147 -2 8 1152 22 0 0 0 chr11 74444515 74444537 -47399319 + AT_rich Low_complexity Low_complexity 1 22 0 8 1152 181 339 32 41 chr11 74444766 74444889 -47398967 - L2 LINE L2 -470 2949 2828 8 1152 369 75 0 0 chr11 74445159 74445212 -47398644 + (T)n Simple_repeat Simple_repeat 1 53 0 8 1152 1014 123 7 0 chr11 74445224 74445370 -47398486 - B1_Mus2 SINE Alu 0 147 1 8 1152 854 140 103 0 chr11 74446052 74446188 -47397668 + B1_Mur4 SINE Alu 1 150 0 8 1152 290 309 40 53 chr11 74446273 74446433 -47397423 - MIR SINE MIR -24 244 83 8 1152 192 254 119 0 chr11 74446440 74446499 -47397357 + L3 LINE CR1 2540 2605 -1884 8 1152 701 239 0 0 chr11 74446514 74446644 -47397212 + B1_Mur2 SINE Alu 7 136 -13 8 1152 935 32 98 0 chr11 74446645 74446768 -47397088 + B1_Mus1 SINE Alu 1 135 -13 8 1152 222 62 0 0 chr11 74446768 74446800 -47397056 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1152 2362 96 9 6 chr11 74446808 74447134 -47396722 - ORR1A2 LTR MaLR 0 327 1 8 1152 1509 63 21 0 chr11 74447568 74447759 -47396097 + B2_Mm2 SINE B2 1 195 0 8 17 1535 37 27 0 chr11 74448850 74449037 -47394819 - B2_Mm1a SINE B2 0 193 2 8 1153 624 205 24 32 chr11 74449087 74449213 -47394643 - RSINE1 SINE B4 -38 127 3 8 1153 282 182 18 18 chr11 74449223 74449279 -47394577 - ID_B1 SINE B4 -47 177 122 8 1153 219 180 20 20 chr11 74449328 74449379 -47394477 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1153 746 191 50 0 chr11 74449422 74449563 -47394293 + B1_Mur2 SINE Alu 2 149 0 8 1153 234 239 51 102 chr11 74449706 74449804 -47394052 + ID_B1 SINE B4 116 208 -16 8 1153 636 277 0 14 chr11 74449810 74449953 -47393903 - B1F SINE Alu -1 148 8 8 1153 657 211 22 29 chr11 74449989 74450126 -47393730 + B1_Mur1 SINE Alu 3 138 -11 8 1153 603 92 0 0 chr11 74450126 74450213 -47393643 + (GGGA)n Simple_repeat Simple_repeat 2 88 0 8 1153 288 115 0 0 chr11 74450268 74450304 -47393552 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1153 1290 34 0 0 chr11 74450304 74450451 -47393405 - B1_Mus2 SINE Alu 0 147 1 8 1153 288 115 0 0 chr11 74450451 74450466 -47393390 + (T)n Simple_repeat Simple_repeat 1 15 0 8 1153 1066 47 17 7 chr11 74450466 74450605 -47393251 - B1_Mus1 SINE Alu 0 148 24 8 1153 21 57 0 0 chr11 74451749 74451784 -47392072 + GC_rich Low_complexity Low_complexity 1 35 0 8 1153 22 0 0 0 chr11 74451900 74451922 -47391934 + GC_rich Low_complexity Low_complexity 1 22 0 8 1153 245 346 25 0 chr11 74455641 74455722 -47388134 + MLT1K LTR MaLR 198 280 -315 8 1153 543 316 96 10 chr11 74455881 74456079 -47387777 + ID_B1 SINE B4 3 217 -7 8 1153 739 230 102 11 chr11 74456088 74456264 -47387592 + B3A SINE B2 1 192 -6 8 1153 585 215 0 0 chr11 74456381 74456488 -47387368 - B1_Mur2 SINE Alu -42 107 1 8 1153 286 250 125 0 chr11 74456549 74456621 -47387235 - ID4 SINE ID -1 82 2 8 1153 35 0 0 0 chr11 74456621 74456656 -47387200 + AT_rich Low_complexity Low_complexity 1 35 0 8 1153 269 61 0 0 chr11 74457019 74457052 -47386804 - MIR SINE MIR -62 146 114 8 1153 884 61 0 0 chr11 74457345 74457460 -47386396 - B1_Mm SINE Alu 0 147 33 8 1153 702 152 0 0 chr11 74457670 74457795 -47386061 + CT-rich Low_complexity Low_complexity 2 126 0 8 1153 360 185 83 42 chr11 74457805 74457901 -47385955 - PB1D10 SINE Alu -7 110 11 8 1153 774 234 86 25 chr11 74458327 74458524 -47385332 + B3 SINE B2 2 210 -6 8 1153 230 338 67 27 chr11 74458781 74458930 -47384926 + L1MC LINE L1 5728 5882 -2000 8 1153 735 222 7 0 chr11 74458940 74459075 -47384781 + RSINE1 SINE B4 2 137 -28 8 1153 238 337 135 24 chr11 74459075 74459110 -47384746 + B2_Mm2 SINE B2 1 189 -6 8 1153 465 231 77 0 chr11 74459203 74459307 -47384549 - PB1D9 SINE Alu -8 112 1 8 1153 278 197 118 0 chr11 74459307 74459383 -47384473 + B3 SINE B2 31 115 -101 8 1153 931 148 0 57 chr11 74459432 74459590 -47384266 + B1_Mur4 SINE Alu 1 149 -1 8 1153 23 0 0 0 chr11 74459590 74459613 -47384243 + AT_rich Low_complexity Low_complexity 1 23 0 8 1153 1035 105 7 0 chr11 74459735 74459878 -47383978 + B1_Mus1 SINE Alu 5 148 0 8 1153 377 115 0 13 chr11 74459881 74459960 -47383896 + (CAAAA)n Simple_repeat Simple_repeat 2 79 0 8 1153 206 215 31 0 chr11 74459995 74460018 -47383838 + polypurine Low_complexity Low_complexity 1 23 0 8 1153 1205 121 26 21 chr11 74460018 74460212 -47383644 + B2_Mm2 SINE B2 1 195 0 8 1153 206 215 31 0 chr11 74460212 74460253 -47383603 + GA-rich Low_complexity Low_complexity 24 66 0 8 1153 358 250 26 0 chr11 74460285 74460361 -47383495 - ID_B1 SINE B4 -77 147 70 8 1153 322 186 343 0 chr11 74460370 74460472 -47383384 - ID_B1 SINE B4 0 224 88 8 1153 201 39 0 0 chr11 74460496 74460522 -47383334 + (G)n Simple_repeat Simple_repeat 1 26 0 8 1153 274 250 0 16 chr11 74460652 74460713 -47383143 + B1F SINE Alu 88 147 -2 8 1153 334 122 0 0 chr11 74460812 74460861 -47382995 + HAL1-3A_ME LINE L1 1969 2017 -841 8 1153 279 0 0 0 chr11 74460861 74460892 -47382964 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 8 1153 558 289 18 86 chr11 74460971 74461134 -47382722 + B4A SINE B4 80 231 -61 8 1153 423 68 0 0 chr11 74461140 74461199 -47382657 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1153 214 247 169 24 chr11 74461256 74461339 -47382517 - MIR SINE MIR -84 124 30 8 1153 285 29 0 0 chr11 74461379 74461413 -47382443 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8 1153 410 268 16 0 chr11 74461416 74461528 -47382328 - PB1D10 SINE Alu -3 117 1 8 1153 393 258 11 11 chr11 74461778 74461872 -47381984 - PB1D10 SINE Alu -3 114 21 8 1153 280 56 0 0 chr11 74462501 74462537 -47381319 - U2 snRNA snRNA -152 36 1 8 1153 223 311 58 38 chr11 74465850 74466016 -47377840 + MIRc SINE MIR 4 176 -32 8 1153 686 144 35 26 chr11 74467830 74467944 -47375912 - B1_Mur3 SINE Alu -21 128 14 9 1153 283 247 78 88 chr11 74467876 74467978 -47375878 - B4A SINE B4 -125 167 67 9 1153 186 289 40 91 chr11 74468117 74468216 -47375640 + MIR3 SINE MIR 81 174 -34 9 1153 631 111 9 75 chr11 74468910 74469017 -47374839 + B1_Mur4 SINE Alu 39 140 -10 9 1153 219 36 0 0 chr11 74469017 74469045 -47374811 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1153 396 0 0 0 chr11 74469123 74469167 -47374689 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1153 681 165 16 32 chr11 74471139 74471264 -47372592 - B1_Mur4 SINE Alu 0 150 28 9 1153 592 212 0 0 chr11 74471401 74471500 -47372356 + PB1D7 SINE Alu 22 120 0 9 1153 486 0 0 0 chr11 74471786 74471840 -47372016 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1153 851 233 23 28 chr11 74472032 74472248 -47371608 + B3 SINE B2 2 216 0 9 1153 279 313 81 0 chr11 74472256 74472355 -47371501 + B1F SINE Alu 4 110 -10 9 1153 317 307 87 9 chr11 74472463 74472578 -47371278 + B1F SINE Alu 13 136 -13 9 1153 433 286 67 20 chr11 74474524 74474674 -47369182 - RSINE1 SINE B4 -8 157 1 9 1153 182 241 119 17 chr11 74474732 74474791 -47369065 - MIR SINE MIR -81 181 117 9 1153 457 287 98 40 chr11 74475845 74476121 -47367735 + B4A SINE B4 1 292 0 9 1153 529 162 20 16 chr11 74476134 74476255 -47367601 + B1_Mur2 SINE Alu 1 119 -1 9 1153 498 162 192 54 chr11 74476494 74476624 -47367232 - B1_Mus1 SINE Alu 0 148 1 9 1153 701 265 85 16 chr11 74476637 74476825 -47367031 - B3 SINE B2 0 216 16 9 1153 1116 71 0 0 chr11 74481838 74481978 -47361878 + B1_Mus2 SINE Alu 7 146 -1 9 1153 807 163 14 69 chr11 74481990 74482135 -47361721 - B1_Mur4 SINE Alu -12 138 2 9 1153 360 268 143 24 chr11 74482138 74482264 -47361592 - B1F SINE Alu -5 144 4 9 1153 389 250 0 99 chr11 74482376 74482487 -47361369 - ID_B1 SINE B4 -4 220 121 9 1153 227 316 54 84 chr11 74483321 74483487 -47360369 + MLT1G1 LTR MaLR 291 451 -128 9 1153 580 263 69 83 chr11 74485313 74485529 -47358327 + B3 SINE B2 1 213 -3 9 1153 256 294 0 66 chr11 74485592 74485683 -47358173 - B4A SINE B4 -205 87 3 9 1153 244 238 31 31 chr11 74485878 74485943 -47357913 + PB1D10 SINE Alu 45 109 -8 9 1153 663 132 42 34 chr11 74486001 74486119 -47357737 + PB1D9 SINE Alu 1 119 -1 9 1153 1090 97 7 0 chr11 74486295 74486440 -47357416 - B1_Mus2 SINE Alu 0 147 2 9 1153 23 54 0 0 chr11 74488105 74488142 -47355714 + AT_rich Low_complexity Low_complexity 1 37 0 9 1153 238 256 131 24 chr11 74491851 74491935 -47351921 - B1F2 SINE Alu -51 98 6 9 1153 387 312 130 14 chr11 74491960 74492106 -47351750 - RSINE1 SINE B4 0 165 3 9 1153 691 167 45 0 chr11 74492302 74492434 -47351422 - URR1A DNA MER1_type -10 216 79 9 1153 1298 97 16 16 chr11 74492489 74492677 -47351179 + B2_Mm2 SINE B2 6 193 -2 9 1153 354 355 9 9 chr11 74493221 74493329 -47350527 - ID_B1 SINE B4 -109 115 8 9 1153 686 287 92 36 chr11 74493346 74493541 -47350315 - ID_B1 SINE B4 -13 211 6 9 1153 750 231 61 61 chr11 74493574 74493786 -47350070 - B3 SINE B2 -4 212 1 9 1153 26 64 0 0 chr11 74493789 74493836 -47350020 + AT_rich Low_complexity Low_complexity 1 47 0 9 1153 330 238 107 19 chr11 74493889 74493992 -47349864 + PB1D9 SINE Alu 9 120 0 9 1153 413 259 50 106 chr11 74494011 74494210 -47349646 + B3A SINE B2 1 188 -10 9 1153 534 237 69 41 chr11 74494214 74494359 -47349497 + B1_Mur1 SINE Alu 1 149 0 9 1153 612 195 25 8 chr11 74494548 74494667 -47349189 - B1F2 SINE Alu 0 149 29 9 1153 379 232 130 10 chr11 74494686 74494786 -47349070 - PB1D9 SINE Alu 0 120 9 9 1153 301 305 59 72 chr11 74495137 74495289 -47348567 + HAL1 LINE L1 816 965 -1542 9 1153 639 214 26 48 chr11 74495292 74495475 -47348381 + B3 SINE B2 5 194 -1 9 1153 27 29 0 0 chr11 74495839 74495873 -47347983 + AT_rich Low_complexity Low_complexity 1 34 0 9 1153 536 188 0 10 chr11 74496303 74496400 -47347456 + B1_Mur2 SINE Alu 53 148 -1 9 1153 217 188 21 0 chr11 74496400 74496448 -47347408 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 9 1153 736 279 6 6 chr11 74496626 74496785 -47347071 - RSINE1 SINE B4 -4 161 3 9 1153 301 245 74 11 chr11 74497477 74497572 -47346284 + L1M4b LINE L1 2221 2321 -5013 9 1153 531 66 0 0 chr11 74497614 74497690 -47346166 + (TATG)n Simple_repeat Simple_repeat 3 78 0 9 1153 318 293 0 24 chr11 74497693 74497777 -47346079 - BC1_Mm scRNA scRNA -70 82 1 9 1153 612 126 102 0 chr11 74498505 74498617 -47345239 - B1_Mus1 SINE Alu -23 124 3 9 1153 277 313 16 80 chr11 74498621 74498746 -47345110 - PB1D10 SINE Alu 0 117 1 9 1153 384 189 186 21 chr11 74498824 74498921 -47344935 + PB1D9 SINE Alu 1 113 -7 9 1153 849 172 0 0 chr11 74500001 74500135 -47343721 - B1_Mus2 SINE Alu -13 134 1 1 1153 1024 57 0 0 chr11 74500166 74500306 -47343550 - L1Md_T LINE L1 0 6582 6443 2 1153 24 0 0 0 chr11 74500411 74500435 -47343421 + AT_rich Low_complexity Low_complexity 1 24 0 3 1153 261 0 0 0 chr11 74500637 74500666 -47343190 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1153 441 218 0 11 chr11 74500720 74500808 -47343048 - B3 SINE B2 -128 88 2 5 1153 694 203 7 39 chr11 74500851 74501005 -47342851 + B1_Mur3 SINE Alu 1 149 0 6 1153 23 0 0 0 chr11 74501030 74501053 -47342803 + AT_rich Low_complexity Low_complexity 1 23 0 7 1153 1147 48 0 52 chr11 74501183 74501337 -47342519 - B1_Mm SINE Alu 0 147 2 8 1153 1499 52 5 10 chr11 74501355 74501549 -47342307 - B2_Mm1t SINE B2 0 193 1 9 1153 437 286 62 0 chr11 74501599 74501711 -47342145 - PB1D9 SINE Alu 0 120 2 1 1153 227 211 154 26 chr11 74501735 74501813 -47342043 - PB1D10 SINE Alu 0 117 30 1 1153 424 228 0 0 chr11 74501954 74502033 -47341823 - ID_B1 SINE B4 0 224 146 1 1153 1166 105 22 16 chr11 74502035 74502219 -47341637 - B2_Mm2 SINE B2 -1 194 10 1 1153 351 236 184 70 chr11 74502295 74502409 -47341447 + B1_Mur4 SINE Alu 24 150 0 1 1153 195 243 0 0 chr11 74502998 74503035 -47340821 - L2b LINE L2 -16 3359 3323 1 1153 206 32 32 0 chr11 74503146 74503177 -47340679 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1153 873 166 66 26 chr11 74503259 74503463 -47340393 - URR1B DNA MER1_type 0 225 1 1 1153 22 56 0 0 chr11 74503839 74503875 -47339981 + AT_rich Low_complexity Low_complexity 1 36 0 1 1153 664 103 31 0 chr11 74504209 74504306 -47339550 - B1_Mur4 SINE Alu -13 137 38 1 1153 975 69 0 44 chr11 74504310 74504446 -47339410 + B1_Mus1 SINE Alu 10 139 -9 2 1153 288 348 8 33 chr11 74504543 74504665 -47339191 - BC1_Mm scRNA scRNA -33 119 1 2 1153 343 62 7 3 chr11 74504686 74504740 -47339116 - B1_Mur4 SINE Alu -62 55 1 2 1153 1693 21 0 0 chr11 74504753 74504943 -47338913 - B2_Mm1t SINE B2 -2 191 2 2 1153 434 323 40 61 chr11 74505115 74505362 -47338494 + B4A SINE B4 10 251 -41 2 1153 616 260 23 8 chr11 74505449 74505577 -47338279 + ID_B1 SINE B4 90 219 -5 2 1153 684 191 12 81 chr11 74505578 74505738 -47338118 + B1_Mur4 SINE Alu 2 150 0 2 1153 403 241 54 36 chr11 74506057 74506169 -47337687 - PB1D9 SINE Alu -5 115 2 2 1153 283 250 24 24 chr11 74506178 74506260 -47337596 - ID_B1 SINE B4 -6 218 137 2 1153 255 235 0 0 chr11 74506475 74506526 -47337330 - B1_Mur1 SINE Alu -1 148 98 2 1153 288 303 67 0 chr11 74506607 74506696 -47337160 - PB1D9 SINE Alu 0 120 26 3 1153 214 292 46 0 chr11 74506850 74506915 -47336941 - B2_Mm1t SINE B2 -124 69 2 3 1153 684 117 29 0 chr11 74507097 74507200 -47336656 + ORR1A4 LTR MaLR 224 329 0 3 1153 503 305 38 19 chr11 74507255 74507412 -47336444 + B4A SINE B4 10 169 -123 3 1153 275 254 0 16 chr11 74507495 74507559 -47336297 + B4A SINE B4 218 280 -12 3 1153 472 293 75 25 chr11 74507609 74507770 -47336086 + B3 SINE B2 48 216 0 3 1153 785 175 7 40 chr11 74507887 74508036 -47335820 - B1_Mus2 SINE Alu -1 146 3 3 1153 411 169 177 10 chr11 74508178 74508274 -47335582 - PB1D9 SINE Alu -6 114 3 3 1153 487 295 42 28 chr11 74508326 74508469 -47335387 - B1_Mus2 SINE Alu -1 146 2 3 1153 1191 68 0 0 chr11 74508508 74508656 -47335200 + B1_Mus1 SINE Alu 1 148 0 3 1153 394 145 174 0 chr11 74508832 74508901 -47334955 - B3 SINE B2 -133 83 3 3 1153 231 227 13 26 chr11 74509028 74509105 -47334751 + B3 SINE B2 141 216 0 4 1153 252 167 0 0 chr11 74509277 74509325 -47334531 + (CATA)n Simple_repeat Simple_repeat 3 50 0 4 1153 291 300 144 0 chr11 74509418 74509508 -47334348 + B3A SINE B2 15 117 -81 4 1153 226 19 35 86 chr11 74509542 74509561 -47334295 + (CAAAA)n Simple_repeat Simple_repeat 3 20 0 4 1153 501 244 166 16 chr11 74509561 74509748 -47334108 + B3 SINE B2 1 215 -1 4 1153 226 19 35 86 chr11 74509748 74509786 -47334070 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 4 1153 1212 57 0 6 chr11 74509837 74509997 -47333859 + B2_Mm1t SINE B2 35 193 0 4 1153 853 158 53 21 chr11 74510089 74510276 -47333580 - B2_Mm2 SINE B2 -2 193 1 4 1153 1269 104 5 15 chr11 74510298 74510493 -47333363 - B2_Mm1t SINE B2 0 193 1 4 1153 734 69 0 94 chr11 74510629 74510757 -47333099 - B1_Mus1 SINE Alu 0 148 33 4 1153 655 144 65 48 chr11 74510757 74510881 -47332975 - B1_Mus1 SINE Alu -6 142 17 5 1153 455 299 66 33 chr11 74510874 74511026 -47332830 - B3A SINE B2 -41 157 1 5 1153 390 302 114 30 chr11 74511268 74511363 -47332493 + B4A SINE B4 4 97 -195 5 1153 1120 109 86 0 chr11 74511363 74511538 -47332318 + B2_Mm1t SINE B2 1 190 -3 5 1153 390 302 114 30 chr11 74511538 74511705 -47332151 + B4A SINE B4 98 288 -4 5 1153 493 198 125 0 chr11 74511762 74511858 -47331998 - B1_Mur1 SINE Alu 0 149 42 5 1153 1196 41 7 0 chr11 74511872 74512017 -47331839 - B1_Mm SINE Alu -1 146 1 5 1153 556 114 0 0 chr11 74512229 74512308 -47331548 + B2_Mm2 SINE B2 1 79 -116 5 1153 1087 103 0 0 chr11 74512465 74512611 -47331245 + B1_Mus1 SINE Alu 2 147 -1 5 1153 238 246 48 16 chr11 74512663 74512725 -47331131 - ID_B1 SINE B4 -6 218 155 5 1153 216 0 0 0 chr11 74513197 74513221 -47330635 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1153 377 207 41 90 chr11 74513381 74513503 -47330353 - PB1D10 SINE Alu 0 117 2 6 1153 250 224 43 43 chr11 74513616 74513686 -47330170 - PB1D9 SINE Alu 0 120 51 6 1153 419 206 144 19 chr11 74513786 74513890 -47329966 + RSINE1 SINE B4 11 127 -38 6 1153 220 283 130 56 chr11 74513890 74513947 -47329909 + B2_Mm1a SINE B2 10 182 -11 6 1153 872 75 33 0 chr11 74514157 74514277 -47329579 + B2_Mm2 SINE B2 1 124 -71 6 1153 205 326 0 0 chr11 74514441 74514490 -47329366 - L2 LINE L2 -1400 2019 1971 6 1153 344 232 122 0 chr11 74514553 74514635 -47329221 - B1F SINE Alu -57 92 1 6 1153 786 167 72 0 chr11 74514798 74514936 -47328920 - B1_Mus1 SINE Alu 0 148 1 6 1153 308 311 98 32 chr11 74515237 74515360 -47328496 + ID_B1 SINE B4 94 224 0 6 1153 244 264 45 23 chr11 74515374 74515506 -47328350 + L1MC5 LINE L1 7519 7653 -308 6 1153 252 0 0 0 chr11 74515621 74515649 -47328207 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1153 468 0 0 0 chr11 74515649 74515700 -47328156 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1153 499 263 53 51 chr11 74516183 74516457 -47327399 + MLT2D LTR ERVL 13 293 -104 7 1153 505 236 132 16 chr11 74516558 74516687 -47327169 + B1_Mur2 SINE Alu 1 144 -5 7 1153 583 242 117 0 chr11 74516801 74516929 -47326927 - B1_Mus1 SINE Alu -4 144 2 7 1153 383 268 39 39 chr11 74517049 74517077 -47326779 + MT2B LTR ERVL 136 163 -438 7 1153 463 220 24 4 chr11 74517077 74517188 -47326668 + B1_Mur1 SINE Alu 1 120 -29 7 1153 337 254 109 109 chr11 74517214 74517351 -47326505 + B3 SINE B2 53 189 -27 7 1153 895 225 20 0 chr11 74517841 74518041 -47325815 - B3 SINE B2 -9 207 4 7 1153 192 40 0 0 chr11 74518060 74518085 -47325771 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1153 832 17 259 0 chr11 74518086 74518202 -47325654 - B1_Mus1 SINE Alu 0 148 3 8 1153 208 297 62 0 chr11 74518489 74518553 -47325303 - MER5A DNA MER1_type -21 168 101 8 1153 370 266 213 23 chr11 74518599 74518626 -47325230 + ID_B1 SINE B4 56 214 -76 8 1153 574 178 33 11 chr11 74518626 74518730 -47325126 + B1_Mur4 SINE Alu 1 107 -13 8 1153 221 0 0 33 chr11 74518732 74518762 -47325094 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1153 296 270 171 26 chr11 74518762 74518793 -47325063 + B4A SINE B4 217 246 -46 8 1153 223 218 36 0 chr11 74518798 74518853 -47325003 + GA-rich Low_complexity Low_complexity 4 60 0 8 1153 289 279 34 23 chr11 74518874 74518962 -47324894 + ID_B1 SINE B4 81 169 -55 8 1153 369 293 49 0 chr11 74519188 74519270 -47324586 + RSINE1 SINE B4 73 158 -7 8 1153 1246 52 80 6 chr11 74519824 74519999 -47323857 - B2_Mm1a SINE B2 -4 189 2 8 1153 529 222 79 36 chr11 74520011 74520151 -47323705 - B1_Mm SINE Alu 0 147 2 8 1153 245 264 273 0 chr11 74520393 74520420 -47323436 + B1_Mur3 SINE Alu 10 149 0 9 1153 319 217 96 0 chr11 74520420 74520503 -47323353 + ID_B1 SINE B4 133 223 -1 9 1153 663 261 6 47 chr11 74520563 74520732 -47323124 + B3A SINE B2 1 162 -36 9 1153 408 67 0 0 chr11 74520756 74520816 -47323040 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1153 757 75 0 28 chr11 74520833 74520942 -47322914 - B1_Mus2 SINE Alu 0 147 42 9 1153 328 282 30 71 chr11 74520834 74520991 -47322865 - ID_B1 SINE B4 0 224 75 9 1153 723 183 126 21 chr11 74520991 74521181 -47322675 + RMER6B LTR ERVK 1 210 -251 9 1153 392 302 47 104 chr11 74521298 74521490 -47322366 - B4A SINE B4 -22 270 90 9 1153 1204 41 0 0 chr11 74521563 74521709 -47322147 - B1_Mm SINE Alu 0 147 2 9 1153 342 303 0 33 chr11 74521717 74521809 -47322047 - B4A SINE B4 -203 89 1 9 1153 512 329 25 0 chr11 74521956 74522114 -47321742 + RSINE1 SINE B4 2 163 -2 9 1153 548 193 93 34 chr11 74522902 74523020 -47320836 + B1_Mur1 SINE Alu 3 127 -22 1 1153 337 261 58 104 chr11 74523020 74523056 -47320800 + MT2B LTR ERVL 167 313 -288 1 1153 552 253 141 121 chr11 74523260 74523372 -47320484 - B3 SINE B2 0 216 88 1 1153 1507 32 0 64 chr11 74523372 74523575 -47320281 + B2_Mm1a SINE B2 1 190 -3 1 1153 552 253 141 121 chr11 74523575 74523660 -47320196 - B3 SINE B2 -129 87 15 1 1153 324 0 0 0 chr11 74523660 74523696 -47320160 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1 1153 214 240 184 13 chr11 74523696 74523772 -47320084 - PB1D10 SINE Alu -12 105 17 1 1153 1269 83 32 27 chr11 74523838 74524023 -47319833 - B2_Mm2 SINE B2 -8 187 2 1 1153 1007 108 107 11 chr11 74524045 74524223 -47319633 - B2_Mm2 SINE B2 0 195 1 1 1153 2396 176 68 26 chr11 74524275 74524868 -47318988 + RLTR31_Mm LTR ERVK 1 690 -2 1 1153 1103 129 6 0 chr11 74525186 74525357 -47318499 + B2_Mm1t SINE B2 3 174 -19 1 1153 364 348 7 36 chr11 74525426 74525566 -47318290 + RSINE1 SINE B4 1 136 -29 1 1153 743 219 0 27 chr11 74525614 74525764 -47318092 + B1_Mm SINE Alu 1 146 -1 1 1153 546 288 35 23 chr11 74525978 74526152 -47317704 + B3A SINE B2 23 198 0 1 1153 329 244 22 79 chr11 74526149 74526238 -47317618 + MT2B2 LTR ERVL 156 239 -345 1 1153 726 213 0 84 chr11 74526162 74526316 -47317540 + B1_Mus2 SINE Alu 7 147 0 1 1153 21 57 0 0 chr11 74526335 74526370 -47317486 + AT_rich Low_complexity Low_complexity 1 35 0 1 1153 278 275 112 25 chr11 74526440 74526556 -47317300 - PB1 SINE Alu -1 126 2 1 1153 2782 72 25 18 chr11 74526625 74527019 -47316837 + MTB_Mm LTR MaLR 3 399 -8 1 1153 775 211 70 25 chr11 74527138 74527337 -47316519 + B3 SINE B2 5 212 -4 1 1153 1026 79 43 0 chr11 74527405 74527545 -47316311 + B1_Mus2 SINE Alu 2 147 0 1 1153 425 131 0 29 chr11 74527574 74527676 -47316180 + Lx LINE L1 6556 6654 0 1 1153 212 333 43 0 chr11 74528215 74528284 -47315572 + B3A SINE B2 93 164 -34 1 1153 306 370 30 10 chr11 74528367 74528468 -47315388 + PB1 SINE Alu 4 106 -21 1 1153 394 167 68 45 chr11 74528471 74528559 -47315297 + PB1D9 SINE Alu 17 106 -14 1 1153 260 325 0 70 chr11 74528634 74528720 -47315136 + ID4 SINE ID 4 83 0 1 1153 195 42 0 0 chr11 74528730 74528754 -47315102 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1153 1240 41 0 0 chr11 74528851 74528998 -47314858 + B1_Mus2 SINE Alu 1 147 0 1 1153 321 318 90 45 chr11 74529032 74529187 -47314669 - RSINE1 SINE B4 -2 163 2 1 1153 26 0 0 0 chr11 74529293 74529319 -47314537 + AT_rich Low_complexity Low_complexity 1 26 0 1 1153 644 147 75 30 chr11 74529702 74529835 -47314021 - B1_Mus1 SINE Alu -5 143 5 1 1153 1224 97 17 0 chr11 74529865 74530040 -47313816 + B2_Mm1t SINE B2 2 179 -14 1 1153 362 97 335 10 chr11 74530080 74530180 -47313676 + B2_Mm2 SINE B2 50 185 -10 1 1153 266 256 105 47 chr11 74530460 74530546 -47313310 + MLT1A1 LTR MaLR 243 333 -75 1 1153 461 312 13 13 chr11 74530709 74530868 -47312988 + RSINE1 SINE B4 3 161 -4 1 1153 271 284 0 56 chr11 74531157 74531228 -47312628 - RSINE1 SINE B4 -87 78 12 1 1153 1228 20 7 26 chr11 74531319 74531470 -47312386 + B1_Mus1 SINE Alu 1 148 0 1 1153 1455 27 31 46 chr11 74531587 74531782 -47312074 - B2_Mm1t SINE B2 -1 192 1 1 1153 1323 77 44 0 chr11 74531879 74532060 -47311796 + B2_Mm2 SINE B2 2 190 -5 1 1153 262 259 78 11 chr11 74532250 74532340 -47311516 + ID_B1 SINE B4 129 224 0 1 1153 315 180 96 52 chr11 74532481 74532600 -47311256 + B1_Mur4 SINE Alu 9 148 -2 1 1153 548 185 118 0 chr11 74532646 74532765 -47311091 - B1_Mus1 SINE Alu -6 142 10 1 1153 208 135 0 0 chr11 74533099 74533136 -47310720 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1153 206 185 18 18 chr11 74533175 74533230 -47310626 + T-rich Low_complexity Low_complexity 3 57 0 1 1153 276 200 76 0 chr11 74533262 74533321 -47310535 - B1_Mur4 SINE Alu -56 91 29 1 1153 467 259 102 27 chr11 74533338 74533485 -47310371 + RSINE1 SINE B4 8 165 0 1 1153 481 282 105 20 chr11 74533509 74533661 -47310195 + B3A SINE B2 5 169 -29 1 1153 490 303 76 0 chr11 74533887 74534019 -47309837 - RSINE1 SINE B4 -22 143 2 1 1153 244 317 45 63 chr11 74534194 74534305 -47309551 + B1F1 SINE Alu 6 114 -35 1 1153 273 239 9 124 chr11 74534298 74534318 -47309538 + B1_Mur2 SINE Alu 49 141 -8 1 1153 287 273 0 94 chr11 74534318 74534403 -47309453 + ID_B1 SINE B4 140 216 -8 1 1153 438 318 9 18 chr11 74534416 74534528 -47309328 + RSINE1 SINE B4 3 113 -52 1 1153 540 214 13 40 chr11 74534608 74534624 -47309232 + ID_B1 SINE B4 78 224 0 1 1153 966 67 0 7 chr11 74534624 74534759 -47309097 + B1_Mus1 SINE Alu 15 148 0 1 1153 228 318 0 0 chr11 74537339 74537402 -47306454 + G-rich Low_complexity Low_complexity 3 65 0 1 1153 291 157 0 0 chr11 74537562 74537613 -47306243 + GA-rich Low_complexity Low_complexity 1 51 0 1 1153 207 292 55 14 chr11 74538787 74538860 -47304996 + MIR SINE MIR 52 127 -135 1 1153 220 280 74 21 chr11 74538879 74538974 -47304882 + PB1 SINE Alu 1 100 -27 1 1153 283 325 11 11 chr11 74539007 74539094 -47304762 + B4A SINE B4 80 166 -126 1 1153 530 257 0 0 chr11 74539023 74539128 -47304728 + PB1D7 SINE Alu 11 115 -5 1 1153 606 200 100 0 chr11 74539136 74539266 -47304590 + B1_Mur3 SINE Alu 1 143 -6 1 1153 244 300 28 14 chr11 74539297 74539368 -47304488 + PB1D10 SINE Alu 11 82 -35 1 1153 427 248 18 35 chr11 74540709 74540822 -47303034 + B4A SINE B4 1 111 -181 1 1153 371 336 54 0 chr11 74541345 74541494 -47302362 + RSINE1 SINE B4 2 158 -7 1 1153 1295 82 22 0 chr11 74541652 74541834 -47302022 - B2_Mm2 SINE B2 -6 189 4 1 1153 487 274 0 0 chr11 74541904 74542010 -47301846 + U6 snRNA snRNA 1 106 -1 1 1153 365 325 93 43 chr11 74542052 74542213 -47301643 + ID_B1 SINE B4 1 169 -55 1 1153 414 244 75 22 chr11 74542195 74542242 -47301614 + ID SINE ID 27 80 -144 1 1153 689 78 48 10 chr11 74542242 74542345 -47301511 + B1_Mm SINE Alu 2 108 -39 1 1153 584 202 36 50 chr11 74542421 74542455 -47301401 + ID_B1 SINE B4 48 218 -74 1 1153 1032 61 0 0 chr11 74542455 74542586 -47301270 + B1_Mus1 SINE Alu 9 139 -9 1 1153 354 268 35 35 chr11 74542748 74542864 -47300992 - PB1D7 SINE Alu -1 119 4 1 1153 1126 89 13 0 chr11 74542909 74543067 -47300789 + B2_Mm1t SINE B2 1 160 -33 1 1153 359 20 0 57 chr11 74543067 74543120 -47300736 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1153 1007 131 35 0 chr11 74543123 74543268 -47300588 + B1_Mur4 SINE Alu 1 150 0 1 1153 852 191 7 0 chr11 74543508 74543655 -47300201 + B1_Mur3 SINE Alu 2 149 0 1 1153 1514 52 0 20 chr11 74543735 74543930 -47299926 - B2_Mm1a SINE B2 -1 192 2 1 1153 363 44 0 0 chr11 74543930 74543975 -47299881 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1153 1141 82 6 0 chr11 74543975 74544133 -47299723 - B2_Mm1a SINE B2 -33 160 2 1 1153 1156 82 0 0 chr11 74544171 74544318 -47299538 - B1_Mus2 SINE Alu 0 147 1 1 1153 741 261 40 25 chr11 74544387 74544587 -47299269 + ID_B1 SINE B4 21 223 -1 1 1153 881 170 13 13 chr11 74544781 74544930 -47298926 - B1_Mur4 SINE Alu 0 150 2 1 1153 387 263 80 53 chr11 74545370 74545464 -47298392 + MT2B LTR ERVL 131 192 -392 1 1153 781 17 2 0 chr11 74545464 74545574 -47298282 + B1_Mm SINE Alu 2 113 -7 1 1153 475 215 213 43 chr11 74545997 74546138 -47297718 - RSINE1 SINE B4 0 165 1 1 1153 333 279 50 43 chr11 74546211 74546289 -47297567 - L1M5 LINE L1 -1910 4236 4157 1 1153 1377 49 43 0 chr11 74546289 74546473 -47297383 - B2_Mm2 SINE B2 -3 192 1 1 1153 333 279 50 43 chr11 74546473 74546555 -47297301 - L1M5 LINE L1 -1990 4156 4075 1 1153 316 118 0 19 chr11 74546581 74546633 -47297223 - PB1D9 SINE Alu -58 62 12 1 1153 331 107 26 13 chr11 74546650 74546726 -47297130 - L1MB2 LINE L1 -101 6070 5994 1 1153 21 36 0 0 chr11 74546755 74546783 -47297073 + AT_rich Low_complexity Low_complexity 1 28 0 1 1153 689 229 41 35 chr11 74546783 74546928 -47296928 - B1_Mur1 SINE Alu -2 147 2 1 1153 345 273 8 106 chr11 74546819 74546942 -47296914 - MT2B LTR ERVL -337 264 154 1 1153 428 229 21 0 chr11 74546952 74547048 -47296808 - ID_B1 SINE B4 -17 207 110 1 1153 328 221 93 37 chr11 74547045 74547153 -47296703 - RSINE1 SINE B4 -49 116 3 1 1153 21 57 0 0 chr11 74547237 74547272 -47296584 + AT_rich Low_complexity Low_complexity 1 35 0 1 1153 232 349 0 0 chr11 74547304 74547367 -47296489 - ID4_ SINE ID -7 76 14 1 1153 987 39 0 45 chr11 74547394 74547527 -47296329 - B1_Mm SINE Alu 0 147 21 1 1153 396 189 15 165 chr11 74547429 74547562 -47296294 - MT2B LTR ERVL -337 264 152 1 1153 284 286 0 0 chr11 74547800 74547863 -47295993 + ID4_ SINE ID 19 81 -2 1 1153 280 316 0 0 chr11 74548931 74548988 -47294868 - RSINE1 SINE B4 -107 58 2 1 1153 411 21 0 0 chr11 74549008 74549056 -47294800 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1 1153 844 125 7 62 chr11 74549056 74549201 -47294655 + B1_Mus1 SINE Alu 2 138 -10 2 1153 548 205 118 0 chr11 74549283 74549410 -47294446 + B1_Mur2 SINE Alu 2 143 -6 2 1153 381 43 0 0 chr11 74549413 74549460 -47294396 + (GGA)n Simple_repeat Simple_repeat 2 48 0 2 1153 213 149 29 15 chr11 74549503 74549571 -47294285 + T-rich Low_complexity Low_complexity 2 70 0 2 1153 717 158 16 24 chr11 74549575 74549698 -47294158 - B1_Mur3 SINE Alu 0 149 28 2 1153 219 298 62 103 chr11 74549581 74549727 -47294129 - B4A SINE B4 -71 221 82 2 1153 657 276 37 0 chr11 74549776 74549939 -47293917 + B3 SINE B2 36 204 -12 2 1153 180 0 0 0 chr11 74549941 74549961 -47293895 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1153 1231 54 0 0 chr11 74549963 74550111 -47293745 - B1_Mus1 SINE Alu 0 148 1 2 1153 24 53 0 0 chr11 74550120 74550158 -47293698 + AT_rich Low_complexity Low_complexity 1 38 0 2 1153 287 346 139 16 chr11 74550174 74550303 -47293553 - RSINE1 SINE B4 -5 160 16 2 1153 1300 275 52 7 chr11 74550390 74550793 -47293063 - Lx8 LINE L1 -953 6520 6100 2 1153 245 327 18 8 chr11 74550836 74550966 -47292890 + L1MC LINE L1 5689 5821 -358 2 1153 564 270 73 73 chr11 74551093 74551229 -47292627 - ID_B1 SINE B4 -54 238 99 2 1153 236 85 0 41 chr11 74551376 74551425 -47292431 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 2 1153 1537 224 111 11 chr11 74551430 74551800 -47292056 + MTD LTR MaLR 12 418 -1 2 1153 342 0 0 0 chr11 74552135 74552173 -47291683 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1153 1081 76 28 0 chr11 74552208 74552352 -47291504 + B1_Mus1 SINE Alu 1 148 0 2 1153 867 158 7 14 chr11 74552902 74553050 -47290806 + B1_Mur3 SINE Alu 2 148 -1 2 1153 290 320 0 0 chr11 74553137 74553212 -47290644 - ID4 SINE ID -4 79 5 2 1153 336 190 308 65 chr11 74553245 74553352 -47290504 + B3A SINE B2 1 133 -65 2 1153 652 218 30 0 chr11 74553304 74553437 -47290419 + B1_Mur4 SINE Alu 14 150 0 2 1153 296 361 52 43 chr11 74553616 74553827 -47290029 - MIRb SINE MIR -8 260 48 2 1153 216 0 0 0 chr11 74553830 74553854 -47290002 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1153 21 0 0 0 chr11 74553886 74553907 -47289949 + AT_rich Low_complexity Low_complexity 1 21 0 2 1153 298 224 60 0 chr11 74554006 74554073 -47289783 - PB1D10 SINE Alu -7 110 40 2 1153 884 171 0 14 chr11 74554449 74554591 -47289265 + B1_Mur2 SINE Alu 2 141 -8 2 1153 252 0 0 0 chr11 74554697 74554725 -47289131 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1153 231 203 83 38 chr11 74554725 74554858 -47288998 - RMER17A2 LTR ERVK -533 373 235 2 1153 674 104 148 0 chr11 74554789 74554904 -47288952 - B2_Mm2 SINE B2 -63 132 1 2 1153 730 257 136 23 chr11 74555071 74555357 -47288499 - MLT1A1 LTR MaLR -2 406 64 2 1153 440 226 38 0 chr11 74555744 74555850 -47288006 - PB1D10 SINE Alu -5 112 3 2 1153 202 29 0 54 chr11 74555964 74556001 -47287855 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 2 1153 1209 61 0 0 chr11 74556014 74556161 -47287695 - B1_Mus2 SINE Alu 0 147 1 2 1153 217 282 141 0 chr11 74556283 74556354 -47287502 + ID2 SINE ID 2 82 -1 2 1153 1012 205 24 24 chr11 74556356 74556566 -47287290 + B3 SINE B2 2 211 -5 2 1153 1113 68 0 0 chr11 74556578 74556725 -47287131 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 2 1153 554 247 99 68 chr11 74556950 74557141 -47286715 - B3A SINE B2 0 198 2 2 1153 225 83 0 0 chr11 74557150 74557186 -47286670 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1153 1050 74 0 0 chr11 74557409 74557558 -47286298 + (TTCC)n Simple_repeat Simple_repeat 3 151 0 2 1153 612 175 36 133 chr11 74557566 74557731 -47286125 - B1_Mur4 SINE Alu -1 149 1 2 1153 642 303 108 28 chr11 74557789 74558149 -47285707 - Lx8 LINE L1 -115 7358 6970 2 1153 234 143 0 23 chr11 74558222 74558265 -47285591 - PB1 SINE Alu -58 69 28 2 1153 579 281 63 21 chr11 74558328 74558517 -47285339 - B3 SINE B2 -10 206 10 2 1153 240 35 0 0 chr11 74558524 74558553 -47285303 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1153 867 42 143 0 chr11 74558556 74558675 -47285181 - B1_Mus1 SINE Alu -12 136 1 2 1153 272 155 14 0 chr11 74558675 74558746 -47285110 + T-rich Low_complexity Low_complexity 2 73 0 2 1153 21 36 0 0 chr11 74558896 74558924 -47284932 + AT_rich Low_complexity Low_complexity 1 28 0 2 1153 732 150 292 6 chr11 74558927 74559095 -47284761 - B3 SINE B2 0 216 1 2 1153 861 168 14 0 chr11 74559287 74559430 -47284426 + B1_Mur4 SINE Alu 1 145 -5 2 1153 270 303 19 39 chr11 74559567 74559670 -47284186 - MLT1H LTR MaLR -74 475 375 2 1153 610 185 62 12 chr11 74559940 74560118 -47283738 - B3 SINE B2 -5 190 11 2 1153 448 228 0 0 chr11 74560140 74560219 -47283637 + ID4_ SINE ID 4 82 -1 2 1153 1078 209 14 45 chr11 74560355 74560519 -47283337 - B3 SINE B2 -2 214 51 2 1153 688 146 105 23 chr11 74560519 74560652 -47283204 - B1_Mus1 SINE Alu 0 148 5 2 1153 1078 209 14 45 chr11 74560652 74560708 -47283148 - B3 SINE B2 -166 50 1 2 1153 577 243 79 0 chr11 74560765 74560905 -47282951 + B3A SINE B2 3 153 -45 2 1153 375 23 0 0 chr11 74560908 74560952 -47282904 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1153 382 243 63 49 chr11 74561057 74561200 -47282656 - MIR SINE MIR -29 233 89 2 1153 687 305 5 26 chr11 74561953 74562148 -47281708 + ID_B1 SINE B4 3 193 -31 2 1153 824 137 7 30 chr11 74562148 74562283 -47281573 + B1_Mur4 SINE Alu 1 132 -18 2 1153 459 0 0 0 chr11 74562286 74562337 -47281519 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 2 1153 725 246 38 19 chr11 74562476 74562687 -47281169 + ID_B1 SINE B4 2 216 -8 2 1153 230 284 124 11 chr11 74562718 74562807 -47281049 + PB1D10 SINE Alu 2 100 -17 2 1153 414 0 0 0 chr11 74563649 74563695 -47280161 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1153 776 147 61 15 chr11 74564040 74564171 -47279685 - B1_Mus1 SINE Alu -10 138 2 2 1153 245 300 34 60 chr11 74564707 74564856 -47279000 + ORR1E LTR MaLR 61 205 -154 2 1153 216 0 0 0 chr11 74565567 74565591 -47278265 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1153 531 82 0 0 chr11 74565782 74565855 -47278001 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 2 1153 1020 84 0 0 chr11 74565953 74566096 -47277760 + B1_Mus1 SINE Alu 6 148 0 2 1153 188 67 33 0 chr11 74566133 74566163 -47277693 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2 1153 1384 276 52 41 chr11 74566188 74566784 -47277072 + Lx6 LINE L1 6476 7449 -11 2 1153 857 130 278 0 chr11 74566788 74566957 -47276899 + B3 SINE B2 1 216 0 2 1153 900 119 0 20 chr11 74566994 74567140 -47276716 + B1_Mus1 SINE Alu 6 148 0 2 1153 569 215 0 0 chr11 74567238 74567359 -47276497 - ID_B1 SINE B4 -8 216 96 2 1153 1213 55 0 0 chr11 74567384 74567529 -47276327 + B1_Mus1 SINE Alu 1 145 -3 2 1153 312 48 0 0 chr11 74567529 74567571 -47276285 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 2 1153 653 184 0 14 chr11 74567607 74567898 -47275958 + (CA)n Simple_repeat Simple_repeat 1 286 0 2 1153 445 255 69 0 chr11 74568333 74568435 -47275421 - PB1D7 SINE Alu -11 109 1 2 1153 1135 92 116 0 chr11 74568510 74568683 -47275173 - B2_Mm1t SINE B2 0 193 1 2 1153 816 65 0 0 chr11 74568693 74568800 -47275056 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2 1153 1125 103 0 0 chr11 74568803 74568949 -47274907 - B1_Mus1 SINE Alu 0 148 3 2 1153 1080 141 5 25 chr11 74568951 74569147 -47274709 - MTD LTR MaLR -5 414 223 2 1153 408 214 128 15 chr11 74569171 74569304 -47274552 - B1_Mur2 SINE Alu -1 148 1 2 1153 207 0 0 0 chr11 74569331 74569354 -47274502 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1153 1078 64 64 0 chr11 74569354 74569494 -47274362 - B1_Mur4 SINE Alu 0 150 2 2 1153 313 135 0 0 chr11 74569561 74569613 -47274243 + B1F2 SINE Alu 9 60 -89 2 1153 270 203 15 30 chr11 74569613 74569627 -47274229 + ID_B1 SINE B4 90 154 -70 2 1153 1067 215 5 5 chr11 74569632 74569838 -47274018 + B3 SINE B2 5 210 -6 2 1153 249 280 145 43 chr11 74570827 74570965 -47272891 + B4 SINE B4 70 221 -71 2 1153 518 139 220 25 chr11 74570851 74570969 -47272887 + B1_Mur3 SINE Alu 8 148 -1 2 1153 185 83 28 0 chr11 74571003 74571039 -47272817 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1153 467 206 42 93 chr11 74571066 74571115 -47272741 + PB1D10 SINE Alu 1 46 -71 2 1153 1401 84 11 0 chr11 74571115 74571305 -47272551 + B2_Mm1t SINE B2 1 192 -1 2 1153 467 206 42 93 chr11 74571305 74571373 -47272483 + PB1D10 SINE Alu 47 112 -5 2 1153 847 150 42 21 chr11 74571621 74571764 -47272092 + B1_Mur4 SINE Alu 1 146 -4 2 1153 417 39 0 0 chr11 74571764 74571815 -47272041 + (GGGAGA)n Simple_repeat Simple_repeat 4 54 0 2 1153 545 258 45 8 chr11 74571827 74571960 -47271896 + ID_B1 SINE B4 87 224 0 2 1153 653 168 112 0 chr11 74572015 74572140 -47271716 + B1_Mus1 SINE Alu 3 141 -7 2 1153 1220 68 0 0 chr11 74572186 74572334 -47271522 + B1_Mus1 SINE Alu 1 148 0 2 1153 197 108 27 0 chr11 74572337 74572374 -47271482 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1153 289 251 77 44 chr11 74572412 74572592 -47271264 - B3 SINE B2 -6 189 1 2 1153 760 88 0 0 chr11 74572698 74572812 -47271044 - B1_Mus1 SINE Alu 0 148 35 3 1153 322 252 70 56 chr11 74572812 74572839 -47271017 - ID_B1 SINE B4 0 222 80 3 1153 207 0 0 0 chr11 74572867 74572890 -47270966 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1153 1315 73 11 22 chr11 74572890 74573071 -47270785 - B2_Mm1t SINE B2 -13 180 2 3 1153 182 128 0 25 chr11 74573076 74573116 -47270740 + T-rich Low_complexity Low_complexity 2 40 0 3 1153 319 255 98 0 chr11 74573217 74573319 -47270537 - PB1D7 SINE Alu -8 112 1 3 1153 927 183 0 0 chr11 74573371 74573551 -47270305 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1153 207 0 0 0 chr11 74573628 74573651 -47270205 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1153 569 98 47 96 chr11 74573651 74573779 -47270077 - PB1D9 SINE Alu -6 142 3 3 1153 950 237 10 5 chr11 74573946 74574154 -47269702 + B3 SINE B2 2 210 -6 3 1153 24 0 0 0 chr11 74574154 74574178 -47269678 + AT_rich Low_complexity Low_complexity 1 24 0 3 1153 1097 96 0 0 chr11 74574184 74574330 -47269526 + B1_Mus2 SINE Alu 2 147 0 3 1153 245 274 157 19 chr11 74574870 74574978 -47268878 - ID_B1 SINE B4 -10 214 92 3 1153 301 258 215 0 chr11 74574982 74575075 -47268781 - PB1D9 SINE Alu -7 113 1 3 1153 669 248 19 32 chr11 74575267 74575425 -47268431 + B3A SINE B2 9 164 -34 3 1153 705 61 0 0 chr11 74575446 74575545 -47268311 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1153 1454 74 0 16 chr11 74575545 74575738 -47268118 - B2_Mm2 SINE B2 -4 191 2 3 1153 453 135 404 0 chr11 74575754 74575858 -47267998 - B1_Mur2 SINE Alu -3 146 1 3 1153 2316 125 29 24 chr11 74575904 74576282 -47267574 + RLTR14 LTR ERV1 3 382 0 3 1153 275 250 37 12 chr11 74576454 74576535 -47267321 - RMER13A LTR ERVK -777 83 1 3 1153 1186 62 7 0 chr11 74576606 74576752 -47267104 - B1_Mus1 SINE Alu 0 148 2 3 1153 243 0 0 0 chr11 74576784 74576811 -47267045 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1153 387 319 36 15 chr11 74576840 74576977 -47266879 - B1F2 SINE Alu -9 140 1 3 1153 397 259 64 9 chr11 74577558 74577667 -47266189 - PB1D10 SINE Alu 0 117 3 3 1153 618 224 103 0 chr11 74577667 74577734 -47266122 - ID SINE ID -141 83 1 3 1153 195 211 123 0 chr11 74578003 74578060 -47265796 + MER5A DNA MER1_type 6 69 -120 3 1153 309 146 186 78 chr11 74578063 74578164 -47265692 + PB1D9 SINE Alu 10 120 0 3 1153 259 280 0 62 chr11 74578397 74578477 -47265379 - RSINE1 SINE B4 -23 142 68 3 1153 1031 71 26 6 chr11 74578777 74578933 -47264923 + B2_Mm2 SINE B2 1 159 -36 3 1153 490 276 37 7 chr11 74578951 74579086 -47264770 - B1F SINE Alu -10 139 1 3 1153 1149 108 45 17 chr11 74579095 74579274 -47264582 - B2_Mm2 SINE B2 -9 186 3 3 1153 194 91 30 0 chr11 74579299 74579332 -47264524 + (CTTA)n Simple_repeat Simple_repeat 2 35 0 3 1153 665 237 0 7 chr11 74579364 74579504 -47264352 - RSINE1 SINE B4 -24 141 3 3 1153 216 0 0 0 chr11 74579517 74579541 -47264315 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 3 1153 270 128 0 0 chr11 74579545 74579592 -47264264 - B1_Mur4 SINE Alu -6 144 98 3 1153 264 105 0 0 chr11 74579581 74579619 -47264237 - B1_Mus1 SINE Alu -110 38 1 3 1154 263 271 132 46 chr11 74580039 74580236 -47263620 - L1M5 LINE L1 -374 5866 5653 3 1154 1094 35 7 0 chr11 74580247 74580388 -47263468 + B1_Mm SINE Alu 6 147 0 3 1154 231 88 0 0 chr11 74580390 74580424 -47263432 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1154 288 0 0 0 chr11 74580440 74580472 -47263384 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1154 748 185 26 46 chr11 74581421 74581574 -47262282 - B1_Mur4 SINE Alu 0 150 1 3 1154 922 216 35 15 chr11 74581610 74581812 -47262044 + B3 SINE B2 1 206 -10 3 1154 189 107 0 0 chr11 74581854 74581882 -47261974 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1154 1164 88 0 0 chr11 74581882 74582029 -47261827 - B1_Mus2 SINE Alu 0 147 1 3 1154 808 218 114 0 chr11 74582031 74582224 -47261632 - B3 SINE B2 -1 215 1 3 1154 333 207 7 218 chr11 74582242 74582384 -47261472 - B3A SINE B2 -5 193 82 3 1154 232 371 29 0 chr11 74582475 74582580 -47261276 - B4A SINE B4 -1 291 184 3 1154 827 126 6 0 chr11 74582733 74582892 -47260964 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 3 1154 413 266 80 8 chr11 74582964 74583089 -47260767 - ID_B1 SINE B4 -7 217 84 3 1154 649 51 0 75 chr11 74583459 74583565 -47260291 + B1_Mus2 SINE Alu 40 137 -10 3 1154 189 0 0 0 chr11 74583566 74583587 -47260269 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 3 1154 21 36 0 0 chr11 74583656 74583684 -47260172 + AT_rich Low_complexity Low_complexity 1 28 0 3 1154 487 211 163 0 chr11 74583694 74583841 -47260015 - B3 SINE B2 -11 205 35 3 1154 264 300 83 8 chr11 74584084 74584205 -47259651 + B1F SINE Alu 6 135 -14 3 1154 617 229 120 0 chr11 74584872 74585055 -47258801 - B3 SINE B2 -11 205 1 3 1154 314 258 30 20 chr11 74585306 74585405 -47258451 - BC1_Mm scRNA scRNA -46 106 7 3 1154 225 257 208 0 chr11 74585425 74585526 -47258330 - L2a LINE L2 -7 3419 3298 3 1154 1418 83 16 0 chr11 74585601 74585793 -47258063 + B2_Mm2 SINE B2 1 195 0 3 1154 294 223 127 30 chr11 74585951 74586085 -47257771 + B1_Mus2 SINE Alu 1 147 0 3 1154 297 257 14 0 chr11 74586686 74586756 -47257100 - ID4 SINE ID -6 77 7 3 1154 312 267 147 0 chr11 74586806 74586922 -47256934 - B1F SINE Alu -1 148 16 3 1154 793 217 87 15 chr11 74587495 74587701 -47256155 + ID_B1 SINE B4 4 224 0 3 1154 437 114 32 74 chr11 74588136 74588231 -47255625 + B1_Mur4 SINE Alu 60 150 0 3 1154 649 205 227 6 chr11 74588350 74588522 -47255334 + B3 SINE B2 1 210 -6 3 1154 427 204 36 64 chr11 74588596 74588706 -47255150 - RSINE1 SINE B4 -34 131 25 3 1154 28 0 0 0 chr11 74588730 74588758 -47255098 + AT_rich Low_complexity Low_complexity 1 28 0 3 1154 1063 177 14 81 chr11 74588758 74588937 -47254919 - B3 SINE B2 -10 206 40 3 1154 1254 101 16 21 chr11 74588937 74589130 -47254726 - B2_Mm1t SINE B2 -1 192 1 3 1154 1063 177 14 81 chr11 74589130 74589171 -47254685 - B3 SINE B2 -177 39 1 3 1154 398 278 133 9 chr11 74589180 74589398 -47254458 - Charlie12 DNA MER1_type -1202 1671 1427 3 1154 398 198 0 23 chr11 74589434 74589522 -47254334 - RSINE1 SINE B4 -33 132 47 3 1154 780 150 22 36 chr11 74589600 74589738 -47254118 - B1_Mus1 SINE Alu -12 136 1 3 1154 648 159 0 0 chr11 74589962 74590069 -47253787 + B1_Mus2 SINE Alu 41 147 0 3 1154 308 227 166 50 chr11 74590069 74590101 -47253755 + MT2B LTR ERVL 198 352 -249 3 1154 323 232 161 24 chr11 74590091 74590259 -47253597 - Charlie12 DNA MER1_type -1720 1153 963 3 1154 432 0 0 0 chr11 74590351 74590399 -47253457 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1154 322 299 6 0 chr11 74590460 74590546 -47253310 - PB1D10 SINE Alu -43 106 17 3 1154 472 200 11 67 chr11 74590586 74590692 -47253164 - PB1D9 SINE Alu -50 97 1 3 1154 809 239 45 20 chr11 74590759 74590960 -47252896 - B3 SINE B2 -6 210 5 3 1154 513 223 89 48 chr11 74591491 74591637 -47252219 + RSINE1 SINE B4 2 153 -12 3 1154 276 208 19 0 chr11 74591747 74591800 -47252056 - BC1_Mm scRNA scRNA -97 55 2 3 1154 396 0 0 0 chr11 74591815 74591859 -47251997 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1154 324 0 0 0 chr11 74591859 74591894 -47251962 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1154 504 203 125 0 chr11 74592068 74592196 -47251660 - B1_Mur4 SINE Alu -6 144 1 3 1154 914 217 44 10 chr11 74592225 74592430 -47251426 + B3 SINE B2 1 212 -4 3 1154 562 262 12 59 chr11 74592470 74592640 -47251216 - RSINE1 SINE B4 0 165 4 3 1154 21 0 0 0 chr11 74592811 74592832 -47251024 + AT_rich Low_complexity Low_complexity 1 21 0 3 1154 465 66 0 0 chr11 74593208 74593269 -47250587 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 3 1154 1183 63 0 0 chr11 74593270 74593412 -47250444 - B1_Mus2 SINE Alu -4 143 2 3 1154 1016 186 59 0 chr11 74593503 74593707 -47250149 - B3 SINE B2 0 216 1 3 1154 384 255 43 52 chr11 74593709 74593825 -47250031 - RSINE1 SINE B4 -45 120 6 3 1154 405 0 0 0 chr11 74594839 74594884 -47248972 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1154 270 0 0 0 chr11 74594884 74594913 -47248943 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1154 277 188 208 0 chr11 74595205 74595306 -47248550 - Lx9 LINE L1 -6 7638 7517 3 1154 275 0 29 0 chr11 74595317 74595352 -47248504 + (TGG)n Simple_repeat Simple_repeat 1 36 0 3 1154 281 250 0 77 chr11 74595377 74595455 -47248401 - B1F2 SINE Alu -77 72 1 3 1154 525 248 0 34 chr11 74595455 74595502 -47248354 - ID SINE ID -143 81 39 3 1154 720 189 20 34 chr11 74595517 74595665 -47248191 - B1_Mur1 SINE Alu 0 149 4 3 1154 586 292 19 0 chr11 74595778 74595861 -47247995 + B4A SINE B4 1 86 -206 3 1154 213 337 34 57 chr11 74595861 74595949 -47247907 + B1F2 SINE Alu 1 86 -63 3 1154 230 274 46 35 chr11 74595989 74596076 -47247780 - Charlie10b DNA MER1_type -1 241 154 3 1154 1024 87 0 7 chr11 74596459 74596598 -47247258 - B1_Mus2 SINE Alu -5 142 5 3 1154 658 184 55 28 chr11 74596703 74596848 -47247008 - B1_Mur1 SINE Alu 0 149 1 4 1154 792 174 21 0 chr11 74596893 74597037 -47246819 - B1_Mus1 SINE Alu 0 148 2 4 1154 444 180 26 101 chr11 74598051 74598189 -47245667 - B1_Mur3 SINE Alu -23 126 1 4 1154 218 81 27 0 chr11 74598213 74598250 -47245606 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 1154 1186 54 0 13 chr11 74598250 74598400 -47245456 - B1_Mus1 SINE Alu 0 148 1 4 1154 619 110 380 7 chr11 74598415 74598552 -47245304 - B2_Mm2 SINE B2 -6 189 2 4 1154 327 186 343 0 chr11 74598588 74598690 -47245166 - B1F2 SINE Alu 0 149 13 4 1154 1137 92 0 6 chr11 74599057 74599221 -47244635 - B2_Mm2 SINE B2 -32 163 1 4 1154 261 0 0 0 chr11 74599872 74599901 -47243955 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1154 456 19 0 0 chr11 74600487 74600540 -47243316 + (CACG)n Simple_repeat Simple_repeat 1 53 0 4 1154 297 186 41 132 chr11 74600585 74600672 -47243184 - B1F2 SINE Alu -1 119 9 4 1154 270 288 15 0 chr11 74600621 74600687 -47243169 - ID_B1 SINE B4 -84 140 74 4 1154 745 76 232 48 chr11 74601252 74601377 -47242479 + B1_Mus1 SINE Alu 1 148 0 4 1154 640 202 0 8 chr11 74601440 74601560 -47242296 - PB1D9 SINE Alu 0 120 2 4 1154 269 209 148 23 chr11 74601938 74602026 -47241830 + RCHARR1 DNA MER1_type 873 971 -3 4 1154 297 315 102 8 chr11 74602321 74602449 -47241407 + B1F2 SINE Alu 2 141 -8 4 1154 316 227 93 0 chr11 74602455 74602530 -47241326 + ID4 SINE ID 2 83 0 4 1154 284 64 0 21 chr11 74602937 74602985 -47240871 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1154 744 234 84 0 chr11 74603121 74603288 -47240568 - B3 SINE B2 -13 203 23 4 1154 198 0 0 0 chr11 74603306 74603328 -47240528 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 1154 344 254 202 0 chr11 74603328 74603442 -47240414 - B1F2 SINE Alu -11 138 2 4 1154 407 238 64 37 chr11 74603500 74603609 -47240247 - MER82 DNA MER2_type -534 119 8 4 1154 1267 98 40 0 chr11 74603791 74603964 -47239892 + B2_Mm2 SINE B2 2 181 -14 4 1154 222 37 0 0 chr11 74603967 74603994 -47239862 + (GAA)n Simple_repeat Simple_repeat 2 28 0 4 1154 866 280 16 20 chr11 74604070 74604314 -47239542 - B4A SINE B4 -49 243 1 4 1154 568 205 26 0 chr11 74604382 74604499 -47239357 + PB1D9 SINE Alu 1 120 0 4 1154 288 77 0 0 chr11 74604499 74604538 -47239318 + (GAAAA)n Simple_repeat Simple_repeat 1 39 0 4 1154 1322 96 21 0 chr11 74604573 74604760 -47239096 + B2_Mm2 SINE B2 1 191 -4 4 1154 259 296 41 0 chr11 74604761 74604859 -47238997 - PB1D10 SINE Alu -15 102 1 4 1154 850 229 22 5 chr11 74604970 74605154 -47238702 - B3 SINE B2 -10 206 20 4 1154 1183 35 0 27 chr11 74605177 74605324 -47238532 - B1_Mus2 SINE Alu 0 147 5 4 1154 1425 50 71 0 chr11 74606110 74606292 -47237564 - B2_Mm2 SINE B2 0 195 1 4 1154 450 103 0 0 chr11 74606350 74606418 -47237438 - B1_Mur4 SINE Alu -5 145 78 4 1154 734 199 142 11 chr11 74606468 74606651 -47237205 - B3 SINE B2 -6 210 4 4 1154 1047 97 126 12 chr11 74606764 74606931 -47236925 + B2_Mm2 SINE B2 1 186 -9 4 1154 394 260 59 20 chr11 74606978 74607104 -47236752 + B1F SINE Alu 10 141 -8 4 1154 406 237 0 0 chr11 74607116 74607192 -47236664 + ID4_ SINE ID 3 78 -5 4 1154 658 217 182 6 chr11 74607227 74607403 -47236453 + B3 SINE B2 1 207 -9 4 1154 225 154 0 0 chr11 74607470 74607509 -47236347 + T-rich Low_complexity Low_complexity 1 39 0 4 1154 1191 74 0 0 chr11 74607509 74607657 -47236199 - B1_Mus1 SINE Alu 0 148 1 4 1154 360 0 0 0 chr11 74607870 74607910 -47235946 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 4 1154 1187 38 0 6 chr11 74607911 74608068 -47235788 - B2_Mm1a SINE B2 -36 157 2 4 1154 1181 48 7 0 chr11 74608512 74608658 -47235198 + B1_Mm SINE Alu 1 147 0 4 1154 601 168 26 0 chr11 74608732 74608845 -47235011 - B1_Mur4 SINE Alu -34 116 1 4 1154 1101 201 50 31 chr11 74608846 74609169 -47234687 - L1M4 LINE L1 -860 5286 4958 4 1154 328 312 57 0 chr11 74609166 74609323 -47234533 + L1M5 LINE L1 4994 5159 -987 4 1154 310 173 0 0 chr11 74609341 74609393 -47234463 - ID4 SINE ID -25 58 7 4 1154 855 202 16 33 chr11 74610366 74610550 -47233306 - B3 SINE B2 -17 199 19 4 1154 216 0 0 0 chr11 74610569 74610593 -47233263 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1154 1266 88 50 0 chr11 74610593 74610775 -47233081 - B2_Mm1a SINE B2 -2 191 1 4 1154 729 138 2 16 chr11 74610857 74610995 -47232861 - B1_Mur2 SINE Alu -2 147 9 4 1154 391 229 91 0 chr11 74611087 74611223 -47232633 - L1MB2 LINE L1 -236 5935 5788 4 1154 539 294 0 14 chr11 74611740 74611885 -47231971 - B1_Mur2 SINE Alu -5 144 2 4 1154 372 259 83 9 chr11 74612551 74612660 -47231196 + PB1D10 SINE Alu 1 117 0 4 1154 417 240 270 0 chr11 74612730 74612875 -47230981 + B3 SINE B2 15 198 -18 4 1154 278 224 26 0 chr11 74613984 74614060 -47229796 + L1MC4 LINE L1 7574 7651 -391 4 1154 327 167 61 49 chr11 74614291 74614373 -47229483 + L1MC4 LINE L1 7956 8038 -4 4 1154 419 237 31 10 chr11 74614611 74614709 -47229147 - ID_B1 SINE B4 -7 217 118 4 1154 219 248 133 76 chr11 74614770 74614875 -47228981 - PB1D10 SINE Alu -5 112 2 4 1154 1684 31 0 0 chr11 74614906 74615097 -47228759 - B2_Mm1a SINE B2 -1 192 2 4 1154 1220 62 0 0 chr11 74615287 74615433 -47228423 + B1_Mm SINE Alu 2 147 0 4 1154 697 262 15 68 chr11 74615445 74615650 -47228206 + ID_B1 SINE B4 3 196 -28 4 1154 328 266 47 73 chr11 74615728 74615770 -47228086 - L1MEc LINE L1 -2925 3394 3354 4 1154 1397 90 16 0 chr11 74615770 74615958 -47227898 - B2_Mm2 SINE B2 0 195 5 4 1154 328 266 47 73 chr11 74615958 74616065 -47227791 - L1MEc LINE L1 -2966 3353 3249 4 1154 1223 43 0 0 chr11 74616079 74616220 -47227636 - B1_Mm SINE Alu -6 141 1 4 1154 329 290 14 84 chr11 74616236 74616379 -47227477 - L1MEc LINE L1 -6086 314 182 4 1154 710 216 93 28 chr11 74616648 74616834 -47227022 - B3 SINE B2 0 216 39 4 1154 243 0 0 0 chr11 74616864 74616891 -47226965 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4 1154 349 181 14 14 chr11 74616918 74616991 -47226865 + B1_Mm SINE Alu 73 145 -2 4 1154 22 0 0 0 chr11 74617045 74617067 -47226789 + AT_rich Low_complexity Low_complexity 1 22 0 4 1154 217 226 57 0 chr11 74617100 74617153 -47226703 - RSINE1 SINE B4 -57 108 53 4 1154 601 260 152 0 chr11 74617509 74617686 -47226170 - B3 SINE B2 -5 211 8 4 1154 697 181 49 28 chr11 74617816 74617958 -47225898 + B1_Mur1 SINE Alu 2 146 -3 4 1154 357 274 28 47 chr11 74618014 74618121 -47225735 + PB1D7 SINE Alu 15 119 -1 4 1154 1316 67 5 130 chr11 74618123 74618281 -47225575 + B2_Mm2 SINE B2 1 158 -37 4 1154 273 57 0 0 chr11 74618281 74618316 -47225540 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 4 1154 1316 67 5 130 chr11 74618316 74618380 -47225476 + B2_Mm2 SINE B2 159 195 0 4 1154 21 36 0 0 chr11 74618438 74618466 -47225390 + AT_rich Low_complexity Low_complexity 1 28 0 4 1154 368 275 36 9 chr11 74618610 74618720 -47225136 + PB1D10 SINE Alu 5 117 0 4 1154 2078 131 41 22 chr11 74619027 74619347 -47224509 - ORR1A3 LTR MaLR 0 326 1 4 1154 1489 150 60 32 chr11 74619348 74619630 -47224226 - ORR1A3-int LTR MaLR 0 1963 1674 4 1154 1160 59 0 0 chr11 74619644 74619780 -47224076 - B1_Mm SINE Alu -10 137 2 4 1154 264 299 0 0 chr11 74619802 74619869 -47223987 - ID4 SINE ID -15 68 2 4 1154 575 308 33 93 chr11 74620019 74620234 -47223622 + B3A SINE B2 4 205 -11 4 1154 1065 145 27 22 chr11 74620253 74620436 -47223420 - B2_Mm2 SINE B2 -10 185 2 4 1154 23 0 0 0 chr11 74620448 74620471 -47223385 + AT_rich Low_complexity Low_complexity 1 23 0 4 1154 360 0 0 0 chr11 74620487 74620527 -47223329 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1154 258 105 0 0 chr11 74620527 74620564 -47223292 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1154 1131 68 0 14 chr11 74621255 74621403 -47222453 - B1_Mm SINE Alu 0 147 2 4 1154 404 37 19 0 chr11 74621576 74621630 -47222226 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 4 1154 668 287 21 52 chr11 74622580 74622771 -47221085 + B3 SINE B2 2 186 -30 4 1154 578 213 126 44 chr11 74622909 74623091 -47220765 - B3A SINE B2 0 198 2 4 1154 523 147 250 27 chr11 74623116 74623228 -47220628 - B1_Mur1 SINE Alu 0 149 13 4 1154 454 292 89 26 chr11 74623273 74623463 -47220393 + B3 SINE B2 1 202 -14 4 1154 313 290 54 72 chr11 74623494 74623661 -47220195 - RSINE1 SINE B4 0 165 2 4 1154 1149 116 53 37 chr11 74623740 74623928 -47219928 - B2_Mm2 SINE B2 -4 191 1 4 1154 30 0 0 0 chr11 74623937 74623967 -47219889 + AT_rich Low_complexity Low_complexity 1 30 0 4 1154 611 213 57 8 chr11 74623980 74624103 -47219753 - B3 SINE B2 -87 129 1 4 1154 2724 50 0 17 chr11 74624203 74624547 -47219309 + L1Md_A LINE L1 6245 6582 0 4 1154 1126 80 6 47 chr11 74624551 74624608 -47219248 + B2_Mm2 SINE B2 27 81 -114 4 1154 4862 116 45 13 chr11 74624608 74625392 -47218464 + RMER17D2 LTR ERVK 1 809 0 4 1154 1126 80 6 47 chr11 74625392 74625505 -47218351 + B2_Mm2 SINE B2 82 190 -5 4 1154 1474 60 16 0 chr11 74625530 74625712 -47218144 - B2_Mm2 SINE B2 -9 186 2 4 1154 203 0 37 0 chr11 74625735 74625762 -47218094 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 4 1154 255 274 26 64 chr11 74626703 74626781 -47217075 + ID4_ SINE ID 2 76 -7 4 1154 208 0 62 0 chr11 74626983 74627015 -47216841 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1154 265 242 41 96 chr11 74627069 74627084 -47216772 + PB1D10 SINE Alu 49 81 -36 5 1154 271 227 0 0 chr11 74627084 74627128 -47216728 + ID_B1 SINE B4 174 217 -7 5 1154 265 242 41 96 chr11 74627128 74627142 -47216714 + PB1D10 SINE Alu 82 117 0 5 1154 932 79 32 0 chr11 74627201 74627327 -47216529 + B1_Mus1 SINE Alu 2 131 -17 5 1154 991 132 7 7 chr11 74627405 74627550 -47216306 - B1_Mus2 SINE Alu 0 147 3 5 1154 380 250 0 145 chr11 74627439 74627570 -47216286 - MT2B LTR ERVL -337 264 153 5 1154 280 277 41 41 chr11 74628072 74628170 -47215686 - PB1D10 SINE Alu 0 117 20 5 1154 834 191 7 0 chr11 74628270 74628411 -47215445 - B1_Mus1 SINE Alu -6 142 1 5 1154 295 266 78 0 chr11 74628459 74628523 -47215333 + ID4_ SINE ID 5 73 -10 5 1154 342 183 127 0 chr11 74628915 74628986 -47214870 + PB1D9 SINE Alu 21 100 -20 5 1154 2553 81 11 40 chr11 74629015 74629388 -47214468 - L1_Mus3 LINE L1 -11 6627 6266 5 1154 279 167 0 0 chr11 74629564 74629630 -47214226 + T-rich Low_complexity Low_complexity 1 66 0 5 1154 1151 95 0 0 chr11 74629630 74629778 -47214078 - B1_Mus1 SINE Alu 0 148 1 5 1154 201 267 44 0 chr11 74630117 74630162 -47213694 + MIR SINE MIR 50 96 -166 5 1154 180 211 93 37 chr11 74630353 74630407 -47213449 - L3 LINE CR1 -3480 1009 953 5 1154 405 230 42 50 chr11 74631510 74631629 -47212227 + PB1D7 SINE Alu 1 118 -2 5 1154 211 254 53 66 chr11 74632304 74632380 -47211476 + ID2 SINE ID 8 82 -1 5 1154 849 236 69 6 chr11 74633017 74633192 -47210664 - B3A SINE B2 -12 186 1 5 1154 513 287 135 21 chr11 74633201 74633393 -47210463 - ID_B1 SINE B4 -8 216 3 5 1154 403 263 26 0 chr11 74633538 74633614 -47210242 + ID4 SINE ID 3 80 -3 5 1154 210 225 14 27 chr11 74633698 74633771 -47210085 + T-rich Low_complexity Low_complexity 2 73 0 5 1154 701 146 142 30 chr11 74634089 74634223 -47209633 - B1_Mur4 SINE Alu 0 150 2 5 1154 761 279 9 18 chr11 74634792 74635011 -47208845 - ID_B1 SINE B4 0 224 8 5 1154 217 303 88 24 chr11 74635032 74635157 -47208699 + B1_Mm SINE Alu 2 134 -13 5 1154 1399 85 16 0 chr11 74635533 74635722 -47208134 - B2_Mm1a SINE B2 0 193 2 5 1154 303 325 91 30 chr11 74637252 74637417 -47206439 - MIRb SINE MIR -67 201 27 5 1154 339 264 162 9 chr11 74638955 74639066 -47204790 - B3A SINE B2 -70 128 1 5 1154 213 65 0 0 chr11 74640103 74640134 -47203722 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1154 624 101 29 1 chr11 74640138 74640248 -47203608 - B1_Mus2 SINE Alu 0 149 33 5 1154 276 302 95 104 chr11 74640140 74640351 -47203505 - B4 SINE B4 -69 223 15 5 1154 323 261 52 43 chr11 74640851 74640967 -47202889 - PB1D7 SINE Alu -3 117 1 5 1154 287 287 57 11 chr11 74643264 74643352 -47200504 + MIR3 SINE MIR 92 183 -25 5 1154 22 35 0 0 chr11 74644420 74644449 -47199407 + GC_rich Low_complexity Low_complexity 1 29 0 5 1154 22 56 0 0 chr11 74644781 74644817 -47199039 + GC_rich Low_complexity Low_complexity 1 36 0 5 1154 1212 78 88 11 chr11 74648832 74649013 -47194843 + B2_Mm2 SINE B2 1 195 0 5 1154 186 118 0 0 chr11 74650001 74650035 -47193821 + (CCA)n Simple_repeat Simple_repeat 3 36 0 5 1154 26 0 0 0 chr11 74651890 74651916 -47191940 + GC_rich Low_complexity Low_complexity 1 26 0 5 1154 224 188 83 0 chr11 74653096 74653144 -47190712 + PB1D9 SINE Alu 20 71 -49 5 1154 243 274 54 14 chr11 74653336 74653410 -47190446 + ID4_ SINE ID 2 78 -5 5 1154 919 165 125 39 chr11 74655378 74655586 -47188270 + URR1A DNA MER1_type 1 226 0 5 1154 201 200 0 68 chr11 74656156 74656215 -47187641 + C-rich Low_complexity Low_complexity 4 58 0 5 1154 505 342 21 16 chr11 74659356 74659546 -47184310 + B3A SINE B2 2 192 -6 5 1154 666 264 119 6 chr11 74659557 74659725 -47184131 + B3 SINE B2 2 188 -28 5 1154 716 208 15 23 chr11 74659757 74659890 -47183966 + B1_Mus1 SINE Alu 4 135 -13 5 1154 566 172 73 107 chr11 74659927 74660077 -47183779 + B1_Mus2 SINE Alu 3 147 0 5 1154 1417 72 0 62 chr11 74660207 74660390 -47183466 + B2_Mm2 SINE B2 1 171 -24 5 1154 1210 61 0 0 chr11 74660390 74660537 -47183319 - B1_Mus2 SINE Alu 0 147 1 5 1154 1417 72 0 62 chr11 74660537 74660561 -47183295 + B2_Mm2 SINE B2 172 195 0 5 1154 1147 55 14 0 chr11 74660680 74660825 -47183031 + B1_Mm SINE Alu 1 147 0 5 1154 1315 14 0 0 chr11 74661058 74661204 -47182652 + B1_Mus2 SINE Alu 2 147 0 5 1154 202 132 26 0 chr11 74662820 74662858 -47180998 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1154 249 182 88 10 chr11 74665149 74665208 -47178648 - PB1 SINE Alu 0 117 65 5 1154 307 254 56 0 chr11 74665552 74665623 -47178233 - ID SINE ID -141 83 9 5 1154 579 149 0 16 chr11 74665705 74665813 -47178043 - B3 SINE B2 -86 130 30 5 1154 727 62 103 26 chr11 74665918 74665931 -47177925 - B1_Mus2 SINE Alu 0 147 137 5 1154 183 42 0 0 chr11 74665931 74665955 -47177901 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1154 727 62 103 26 chr11 74665955 74666057 -47177799 - B1_Mus2 SINE Alu -11 136 23 5 1154 353 189 51 82 chr11 74665979 74666077 -47177779 - MT2B LTR ERVL -337 264 170 5 1154 276 224 118 0 chr11 74666074 74666150 -47177706 - B4 SINE B4 -86 206 122 5 1154 525 212 4 83 chr11 74666208 74666344 -47177512 - PB1D7 SINE Alu -8 140 14 5 1154 286 213 71 27 chr11 74666386 74666476 -47177380 + B1F SINE Alu 5 94 -56 5 1154 955 118 0 14 chr11 74668271 74668417 -47175439 - B1_Mus1 SINE Alu 0 148 5 5 1154 24 53 0 0 chr11 74668417 74668455 -47175401 + AT_rich Low_complexity Low_complexity 1 38 0 5 1154 255 171 0 0 chr11 74668503 74668544 -47175312 - B3A SINE B2 -126 72 32 5 1154 1224 63 0 0 chr11 74668544 74668703 -47175153 + B2_Mm1t SINE B2 1 159 -34 5 1154 201 74 0 0 chr11 74668704 74668731 -47175125 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1154 693 0 0 0 chr11 74669308 74669385 -47174471 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1154 311 89 0 0 chr11 74669398 74669443 -47174413 - B2_Mm2 SINE B2 -149 46 2 5 1154 831 229 0 67 chr11 74669452 74669677 -47174179 - B3 SINE B2 -4 212 3 5 1154 815 61 96 37 chr11 74669783 74669919 -47173937 + B2_Mm2 SINE B2 2 145 -50 5 1154 539 304 7 0 chr11 74669901 74670036 -47173820 - ID_B1 SINE B4 -9 215 80 5 1154 513 30 0 0 chr11 74670057 74670124 -47173732 - B1_Mus2 SINE Alu 0 147 81 5 1154 188 0 74 0 chr11 74670143 74670170 -47173686 + (TAAAAA)n Simple_repeat Simple_repeat 6 34 0 5 1154 665 206 37 0 chr11 74670198 74670334 -47173522 + B1_Mur2 SINE Alu 2 142 -7 5 1154 180 0 0 0 chr11 74670863 74670883 -47172973 + (G)n Simple_repeat Simple_repeat 1 20 0 5 1154 299 213 16 115 chr11 74672919 74673041 -47170815 + MT2B LTR ERVL 154 263 -338 5 1154 903 79 0 0 chr11 74672952 74673079 -47170777 + B1_Mur1 SINE Alu 21 147 -2 5 1154 585 230 36 15 chr11 74675518 74675655 -47168201 - ID_B1 SINE B4 -1 223 84 5 1154 188 306 16 0 chr11 74676395 74676457 -47167399 - MIRc SINE MIR -133 135 73 5 1154 324 0 0 0 chr11 74677371 74677407 -47166449 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1154 542 264 13 67 chr11 74679183 74679333 -47164523 + RSINE1 SINE B4 3 144 -21 5 1154 464 59 0 14 chr11 74679352 74679421 -47164435 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1154 909 223 24 29 chr11 74679423 74679593 -47164263 + B3 SINE B2 1 173 -43 5 1154 297 0 0 0 chr11 74679593 74679626 -47164230 + (TA)n Simple_repeat Simple_repeat 2 34 0 5 1154 186 103 0 0 chr11 74679626 74679655 -47164201 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1154 909 223 24 29 chr11 74679655 74679691 -47164165 + B3 SINE B2 174 206 -10 5 1154 1013 88 0 33 chr11 74679692 74679844 -47164012 - B1_Mus2 SINE Alu 0 147 1 5 1154 35 0 0 0 chr11 74679853 74679888 -47163968 + AT_rich Low_complexity Low_complexity 1 35 0 5 1154 230 320 80 0 chr11 74679894 74679969 -47163887 + ID4 SINE ID 3 83 0 5 1154 383 132 0 14 chr11 74683925 74683994 -47159862 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 5 1154 403 304 87 19 chr11 74684032 74684297 -47159559 - B4A SINE B4 -9 283 1 5 1154 299 283 21 21 chr11 74684358 74684452 -47159404 - ID_B1 SINE B4 -3 221 128 5 1154 630 222 15 0 chr11 74685357 74685492 -47158364 + B1_Mur1 SINE Alu 8 144 -5 5 1154 306 193 32 117 chr11 74685510 74685604 -47158252 - RSINE1 SINE B4 -78 87 2 5 1154 1117 62 0 0 chr11 74686139 74686284 -47157572 + B1_Mus2 SINE Alu 3 147 0 5 1154 252 0 0 0 chr11 74686284 74686312 -47157544 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1154 522 302 227 0 chr11 74686926 74687247 -47156609 + L1MC4a LINE L1 5528 5921 -1961 5 1154 268 261 97 11 chr11 74687366 74687459 -47156397 - PB1D7 SINE Alu -12 108 8 5 1154 849 137 0 28 chr11 74689337 74689480 -47154376 - B1_Mur3 SINE Alu -10 139 1 5 1154 425 294 33 47 chr11 74689569 74689711 -47154145 - B1F1 SINE Alu -6 143 2 5 1154 253 284 12 0 chr11 74690710 74690780 -47153076 + ID4_ SINE ID 2 72 -11 5 1154 424 95 24 0 chr11 74690780 74690864 -47152992 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1154 570 218 97 0 chr11 74690896 74691020 -47152836 + B1_Mur1 SINE Alu 1 136 -13 5 1154 218 288 68 0 chr11 74691384 74691443 -47152413 - ID4_ SINE ID -13 70 8 6 1154 921 173 0 0 chr11 74691454 74691604 -47152252 - B1_Mur4 SINE Alu 0 150 1 6 1154 488 265 37 104 chr11 74691630 74691794 -47152062 - RSINE1 SINE B4 -1 164 12 6 1154 1199 34 0 0 chr11 74691834 74691980 -47151876 - B1_Mm SINE Alu 0 147 2 6 1154 24 0 0 0 chr11 74691988 74692012 -47151844 + AT_rich Low_complexity Low_complexity 1 24 0 6 1154 432 206 165 15 chr11 74692012 74692145 -47151711 - RSINE1 SINE B4 -2 163 11 6 1154 233 292 77 0 chr11 74692088 74692153 -47151703 - B3A SINE B2 -127 71 2 6 1154 612 211 61 66 chr11 74692153 74692334 -47151522 - B3A SINE B2 -1 197 30 6 1154 1046 105 26 0 chr11 74692336 74692489 -47151367 + B2_Mm2 SINE B2 1 157 -38 6 1154 261 0 0 0 chr11 74692489 74692518 -47151338 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 1154 23 0 0 0 chr11 74692556 74692579 -47151277 + AT_rich Low_complexity Low_complexity 1 23 0 6 1154 843 137 19 7 chr11 74692582 74692756 -47151100 - B3 SINE B2 -7 191 7 6 1154 273 250 110 46 chr11 74692870 74692979 -47150877 + RCHARR1 DNA MER1_type 16 131 -843 6 1154 479 231 65 0 chr11 74692988 74693096 -47150760 + RSINE1 SINE B4 9 123 -42 6 1154 1480 68 0 0 chr11 74693111 74693303 -47150553 - B2_Mm1t SINE B2 0 193 2 6 1154 550 149 0 0 chr11 74693303 74693390 -47150466 + MT2A LTR ERVL 2 88 -445 6 1154 1024 38 0 8 chr11 74693440 74693573 -47150283 - B1_Mus1 SINE Alu -1 147 16 6 1154 332 150 0 0 chr11 74693576 74693636 -47150220 - B1_Mus2 SINE Alu -2 145 86 6 1154 776 218 148 43 chr11 74693660 74693964 -47149892 + MT2A LTR ERVL 69 530 -54 6 1154 807 274 91 105 chr11 74694023 74694251 -47149605 + RCHARR1 DNA MER1_type 123 340 -634 6 1154 1183 34 0 14 chr11 74694251 74694399 -47149457 - B1_Mus2 SINE Alu 0 147 2 6 1154 807 274 91 105 chr11 74694399 74694533 -47149323 + RCHARR1 DNA MER1_type 341 480 -494 6 1154 245 247 38 25 chr11 74694567 74694579 -47149277 + RCHARR1 DNA MER1_type 456 466 -508 6 1154 333 262 147 14 chr11 74694579 74694722 -47149134 - RSINE1 SINE B4 -1 164 3 6 1154 245 247 38 25 chr11 74694722 74694788 -47149068 + RCHARR1 DNA MER1_type 467 535 -439 6 1154 513 234 50 28 chr11 74694793 74694934 -47148922 + B1F SINE Alu 5 148 -1 6 1154 476 248 12 67 chr11 74695020 74695184 -47148672 + B4 SINE B4 138 292 0 6 1154 445 198 137 24 chr11 74696118 74696242 -47147614 - B1_Mus2 SINE Alu -7 140 3 6 1154 239 262 57 45 chr11 74696306 74696394 -47147462 + PB1 SINE Alu 6 94 -33 6 1154 222 298 12 12 chr11 74696396 74696481 -47147375 + GA-rich Low_complexity Low_complexity 4 88 0 6 1154 301 290 88 8 chr11 74696813 74696938 -47146918 + RSINE1 SINE B4 30 164 -1 6 1154 211 314 88 8 chr11 74697300 74697425 -47146431 + MER5A DNA MER1_type 5 139 -50 6 1154 415 216 61 26 chr11 74697461 74697575 -47146281 - B3 SINE B2 -65 151 34 6 1154 779 108 8 0 chr11 74697584 74697704 -47146152 - B1_Mur3 SINE Alu 0 149 29 6 1154 240 192 0 0 chr11 74697699 74697754 -47146102 - B3 SINE B2 -138 57 3 6 1154 466 278 44 15 chr11 74697770 74697905 -47145951 - B1F SINE Alu -1 148 10 6 1154 2010 108 12 15 chr11 74697912 74698250 -47145606 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1154 53425 30 8 2 chr11 74698260 74704665 -47139191 + IAPEz-int LTR ERVK 34 6479 -2 6 1154 2010 108 12 15 chr11 74704667 74705005 -47138851 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1154 278 164 95 32 chr11 74705087 74705150 -47138706 - MER5A DNA MER1_type -46 143 77 6 1154 270 176 0 0 chr11 74705223 74705274 -47138582 + T-rich Low_complexity Low_complexity 1 51 0 6 1154 1146 55 0 0 chr11 74705274 74705420 -47138436 - B1_Mus2 SINE Alu 0 147 2 6 1154 275 288 30 0 chr11 74705723 74705789 -47138067 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 6 1154 290 219 96 0 chr11 74706203 74706276 -47137580 + B1F SINE Alu 56 135 -14 6 1154 355 214 29 0 chr11 74706496 74706566 -47137290 + ID_B1 SINE B4 85 156 -68 6 1154 371 311 6 51 chr11 74706562 74706718 -47137138 + RSINE1 SINE B4 16 164 -1 6 1154 462 79 0 0 chr11 74706739 74706802 -47137054 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1154 258 314 35 0 chr11 74706835 74706921 -47136935 + ID_B1 SINE B4 134 222 -2 6 1154 249 152 0 0 chr11 74707019 74707052 -47136804 + T-rich Low_complexity Low_complexity 14 46 0 6 1154 1103 42 14 27 chr11 74707052 74707200 -47136656 - B1_Mus2 SINE Alu 0 147 2 6 1154 249 152 0 0 chr11 74707200 74707212 -47136644 + T-rich Low_complexity Low_complexity 2 13 0 6 1154 747 176 15 0 chr11 74707300 74707436 -47136420 - B1_Mur1 SINE Alu -2 147 10 6 1154 268 353 0 32 chr11 74707450 74707573 -47136283 - PB1 SINE Alu -7 120 2 6 1154 686 231 147 31 chr11 74707611 74707987 -47135869 - L1ME3A LINE L1 -249 5924 5499 6 1154 692 250 81 0 chr11 74708117 74708289 -47135567 - B3 SINE B2 0 216 31 6 1154 197 244 40 109 chr11 74709300 74709401 -47134455 - MIRb SINE MIR -96 172 79 6 1154 256 283 21 32 chr11 74709453 74709520 -47134336 - L2c LINE L2 -17 3370 3307 6 1154 216 0 0 0 chr11 74709520 74709544 -47134312 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1154 256 283 21 32 chr11 74709544 74709571 -47134285 - L2c LINE L2 -81 3306 3278 6 1154 21 36 0 0 chr11 74710678 74710706 -47133150 + GC_rich Low_complexity Low_complexity 1 28 0 6 1155 551 184 37 0 chr11 74712229 74712338 -47131518 - PB1D9 SINE Alu -7 113 1 6 1155 225 94 0 0 chr11 74712347 74712379 -47131477 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1155 833 49 153 8 chr11 74712393 74712517 -47131339 - B1_Mus2 SINE Alu -4 143 2 6 1155 474 246 0 43 chr11 74713305 74713420 -47130436 - B1_Mur3 SINE Alu -1 148 39 6 1155 311 220 188 27 chr11 74714677 74714789 -47129067 - B1_Mur2 SINE Alu -1 148 19 6 1155 453 303 119 36 chr11 74715770 74715957 -47127899 + B4A SINE B4 1 195 -97 6 1155 656 37 339 0 chr11 74715957 74716066 -47127790 + B1_Mus1 SINE Alu 3 148 0 6 1155 453 303 119 36 chr11 74716066 74716131 -47127725 + B4A SINE B4 196 273 -19 6 1155 26 0 0 0 chr11 74716265 74716291 -47127565 + AT_rich Low_complexity Low_complexity 1 26 0 6 1155 213 295 146 11 chr11 74716297 74716386 -47127470 - B1F1 SINE Alu -48 101 1 6 1155 28 0 0 0 chr11 74716401 74716429 -47127427 + AT_rich Low_complexity Low_complexity 1 28 0 6 1155 617 299 0 53 chr11 74716508 74716695 -47127161 - ID_B1 SINE B4 -42 182 6 6 1155 331 293 23 94 chr11 74716859 74716987 -47126869 - RSINE1 SINE B4 -35 130 12 6 1155 246 303 114 44 chr11 74717051 74717165 -47126691 - ID_B1 SINE B4 -101 123 2 6 1155 246 298 48 0 chr11 74717190 74717274 -47126582 - PB1D7 SINE Alu 0 120 33 6 1155 220 319 132 0 chr11 74717965 74718056 -47125800 - PB1D10 SINE Alu -14 103 1 6 1155 402 197 0 13 chr11 74718149 74718226 -47125630 - ID4_ SINE ID -3 80 5 6 1155 250 191 0 78 chr11 74720002 74720066 -47123790 - PB1 SINE Alu 0 117 65 6 1155 232 103 0 0 chr11 74720545 74720583 -47123273 + B3 SINE B2 43 80 -118 6 1155 899 103 40 0 chr11 74723045 74723171 -47120685 - B1_Mus1 SINE Alu -15 133 3 6 1155 1047 103 84 22 chr11 74723313 74723468 -47120388 + B2_Mm2 SINE B2 2 169 -26 6 1155 1082 78 35 0 chr11 74723468 74723610 -47120246 - B1_Mus1 SINE Alu 0 148 2 6 1155 1047 103 84 22 chr11 74723610 74723633 -47120223 + B2_Mm2 SINE B2 170 191 -4 6 1155 252 0 0 0 chr11 74724018 74724046 -47119810 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1155 1061 30 14 43 chr11 74724046 74724184 -47119672 - B1_Mm SINE Alu -12 135 2 6 1155 244 249 63 0 chr11 74724320 74724384 -47119472 - B1F1 SINE Alu -47 70 1 6 1155 840 91 0 0 chr11 74725279 74725400 -47118456 - B1_Mus2 SINE Alu 0 147 27 6 1155 351 239 62 100 chr11 74725284 74725414 -47118442 - B4 SINE B4 -71 221 97 6 1155 501 250 85 8 chr11 74725488 74725617 -47118239 - B1F SINE Alu -10 139 1 6 1155 379 185 23 58 chr11 74725773 74725859 -47117997 + B3 SINE B2 48 130 -86 6 1155 453 204 41 0 chr11 74725962 74726060 -47117796 - B3 SINE B2 -114 102 1 6 1155 329 269 26 0 chr11 74726115 74726193 -47117663 - ID_B1 SINE B4 -13 211 132 6 1155 438 202 11 22 chr11 74726874 74726965 -47116891 - B1_Mur4 SINE Alu -52 98 9 6 1155 258 302 73 32 chr11 74726882 74727005 -47116851 - B4 SINE B4 -119 173 46 6 1155 239 306 94 0 chr11 74727001 74727086 -47116770 - B1F1 SINE Alu -56 93 1 6 1155 182 116 0 23 chr11 74727086 74727130 -47116726 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 1155 1274 27 0 0 chr11 74727130 74727277 -47116579 - B1_Mm SINE Alu 0 147 1 6 1155 526 277 65 7 chr11 74727316 74727454 -47116402 + RSINE1 SINE B4 4 149 -16 6 1155 591 15 0 0 chr11 74727462 74727530 -47116326 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1155 652 226 7 27 chr11 74727549 74727699 -47116157 + B1_Mur1 SINE Alu 3 149 0 6 1155 872 156 0 39 chr11 74727739 74727892 -47115964 - B1_Mus1 SINE Alu -1 147 1 6 1155 298 291 61 43 chr11 74727948 74728063 -47115793 - PB1D10 SINE Alu 0 117 1 6 1155 237 296 70 0 chr11 74728003 74728074 -47115782 - B4A SINE B4 -147 145 70 6 1155 636 202 70 0 chr11 74728074 74728203 -47115653 - ID_B1 SINE B4 -3 221 84 6 1155 438 280 28 7 chr11 74728216 74728360 -47115496 - B1F SINE Alu 0 149 3 6 1155 1148 41 7 33 chr11 74728697 74728847 -47115009 - B1_Mus1 SINE Alu -1 147 2 6 1155 423 248 57 0 chr11 74728906 74729011 -47114845 - RSINE1 SINE B4 -40 125 15 6 1155 1081 206 14 23 chr11 74729046 74729264 -47114592 - B3 SINE B2 0 216 1 6 1155 23 33 0 0 chr11 74729450 74729480 -47114376 + AT_rich Low_complexity Low_complexity 1 30 0 6 1155 860 152 7 52 chr11 74729652 74729805 -47114051 - B1_Mus1 SINE Alu 0 148 3 6 1155 910 269 0 0 chr11 74730199 74730400 -47113456 + B3 SINE B2 11 211 -5 6 1155 356 216 226 0 chr11 74730416 74730518 -47113338 + B1_Mur1 SINE Alu 6 130 -19 7 1155 402 242 0 39 chr11 74730679 74730782 -47113074 - ID_B1 SINE B4 0 224 126 7 1155 750 114 0 9 chr11 74730774 74730788 -47113068 - B1_Mm SINE Alu -33 114 101 7 1155 782 49 0 10 chr11 74730788 74730892 -47112964 + (TTC)n Simple_repeat Simple_repeat 3 105 0 7 1155 750 114 0 9 chr11 74730892 74730992 -47112864 - B1_Mm SINE Alu -47 100 1 7 1155 223 299 9 78 chr11 74731133 74731181 -47112675 - PB1D10 SINE Alu 0 117 10 7 1155 231 299 0 15 chr11 74731181 74731249 -47112607 - ID_B1 SINE B4 -67 157 91 7 1155 255 326 106 0 chr11 74731249 74731381 -47112475 - L2 LINE L2 -609 2810 2665 7 1155 617 208 113 7 chr11 74731454 74731604 -47112252 + ID_B1 SINE B4 51 216 -8 7 1155 1225 245 174 21 chr11 74731628 74732191 -47111665 + L1MB3 LINE L1 5342 5990 -193 7 1155 249 148 130 0 chr11 74732272 74732326 -47111530 + L1MB2 LINE L1 6108 6168 -3 7 1155 1194 157 262 16 chr11 74732396 74732759 -47111097 + MT2A LTR ERVL 79 531 -2 7 1155 247 286 76 81 chr11 74732922 74733120 -47110736 - MLT1K LTR MaLR -166 429 233 7 1155 397 256 41 0 chr11 74733197 74733318 -47110538 + L1ME5 LINE L1 5887 6012 -182 7 1155 621 254 0 0 chr11 74733519 74733653 -47110203 + RSINE1 SINE B4 3 136 -29 7 1155 401 211 165 3 chr11 74733694 74733797 -47110059 - B1_Mus1 SINE Alu -30 118 1 7 1155 816 228 11 6 chr11 74733817 74733998 -47109858 - B3A SINE B2 -15 183 2 7 1155 803 289 45 75 chr11 74734053 74734345 -47109511 - B4 SINE B4 0 292 10 7 1155 432 273 65 16 chr11 74734386 74734509 -47109347 - ID_B1 SINE B4 -33 191 63 7 1155 216 179 0 0 chr11 74734583 74734622 -47109234 - ID SINE ID -183 41 3 7 1155 220 27 54 0 chr11 74734629 74734666 -47109190 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1155 1059 70 21 0 chr11 74734666 74734801 -47109055 - B1_Mus2 SINE Alu -8 139 2 7 1155 258 148 148 0 chr11 74734801 74734855 -47109001 - B3 SINE B2 -154 62 1 7 1155 693 242 157 26 chr11 74734880 74735071 -47108785 - B3 SINE B2 0 216 1 7 1155 334 200 131 13 chr11 74735207 74735305 -47108551 - PB1D9 SINE Alu -17 100 1 7 1155 189 74 0 0 chr11 74735307 74735334 -47108522 + (TCC)n Simple_repeat Simple_repeat 3 29 0 7 1155 210 343 9 38 chr11 74735351 74735457 -47108399 - PB1D10 SINE Alu -8 109 7 7 1155 1029 84 28 0 chr11 74735546 74735689 -47108167 + B1_Mus1 SINE Alu 1 147 -1 7 1155 1209 55 7 0 chr11 74735923 74736069 -47107787 + B1_Mus2 SINE Alu 1 147 0 7 1155 682 216 60 70 chr11 74736090 74736289 -47107567 + B3A SINE B2 1 197 -1 7 1155 657 289 26 52 chr11 74736349 74736579 -47107277 + ID_B1 SINE B4 1 224 0 7 1155 494 262 8 32 chr11 74736592 74736718 -47107138 - ID_B1 SINE B4 -39 185 63 7 1155 433 221 72 63 chr11 74736732 74736843 -47107013 - ID_B1 SINE B4 0 224 113 7 1155 1438 68 10 16 chr11 74736977 74737170 -47106686 + B2_Mm1t SINE B2 1 192 -1 7 1155 1378 49 5 93 chr11 74737180 74737384 -47106472 + B2_Mm2 SINE B2 2 187 -8 7 1155 454 197 248 0 chr11 74737396 74737513 -47106343 - B1F2 SINE Alu -3 146 1 7 1155 221 296 39 115 chr11 74737515 74737645 -47106211 - PB1 SINE Alu -5 122 3 7 1155 288 107 0 0 chr11 74737668 74737724 -47106132 - B2_Mm1t SINE B2 0 193 138 7 1155 244 109 87 0 chr11 74737725 74737771 -47106085 - B2_Mm2 SINE B2 -101 94 45 7 1155 768 113 22 22 chr11 74737822 74737958 -47105898 - B2_Mm2 SINE B2 -59 136 1 7 1155 204 40 0 0 chr11 74738080 74738105 -47105751 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1155 907 38 7 70 chr11 74738106 74738249 -47105607 - B1_Mm SINE Alu 0 147 14 7 1155 368 298 63 16 chr11 74738519 74738645 -47105211 - B1F SINE Alu -5 144 13 7 1155 216 209 14 56 chr11 74739540 74739611 -47104245 + (CCCCG)n Simple_repeat Simple_repeat 2 69 0 7 1155 607 252 7 26 chr11 74740446 74740597 -47103259 - B1F SINE Alu -1 148 1 7 1155 413 220 154 9 chr11 74740917 74741027 -47102829 - ID_B1 SINE B4 0 224 99 7 1155 202 278 31 10 chr11 74741424 74741522 -47102334 + (TA)n Simple_repeat Simple_repeat 2 101 0 7 1155 300 264 75 21 chr11 74741634 74741727 -47102129 + B1F1 SINE Alu 1 98 -51 7 1155 186 43 0 0 chr11 74741737 74741760 -47102096 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 7 1155 1067 121 46 0 chr11 74741763 74741936 -47101920 + B2_Mm2 SINE B2 15 195 0 7 1155 1246 27 0 7 chr11 74742045 74742192 -47101664 + B1_Mus2 SINE Alu 1 146 -1 7 1155 1425 88 0 10 chr11 74744488 74744683 -47099173 - B2_Mm2 SINE B2 0 195 3 7 1155 27 0 0 0 chr11 74744686 74744713 -47099143 + AT_rich Low_complexity Low_complexity 1 27 0 7 1155 195 184 0 0 chr11 74745277 74745315 -47098541 + (TTA)n Simple_repeat Simple_repeat 3 40 0 7 1155 1212 54 30 6 chr11 74746017 74746185 -47097671 - B2_Mm2 SINE B2 -22 173 2 7 1155 415 192 97 39 chr11 74746186 74746289 -47097567 + PB1D9 SINE Alu 12 120 0 7 1155 202 304 10 107 chr11 74746293 74746396 -47097460 - L2a LINE L2 -1 3425 3333 7 1155 800 119 17 0 chr11 74746402 74746520 -47097336 + PB1D9 SINE Alu 1 120 0 7 1155 333 259 12 12 chr11 74746589 74746675 -47097181 + ID_B1 SINE B4 138 223 -1 7 1155 645 206 0 44 chr11 74746706 74746843 -47097013 + B1F SINE Alu 17 147 -2 7 1155 908 246 19 10 chr11 74746844 74747053 -47096803 + B3 SINE B2 1 211 -5 7 1155 1356 93 39 0 chr11 74747055 74747237 -47096619 - B2_Mm2 SINE B2 -6 189 1 7 1155 290 303 13 0 chr11 74747259 74747335 -47096521 - B1F SINE Alu -7 142 66 7 1155 926 48 0 8 chr11 74747365 74747490 -47096366 + B1_Mus1 SINE Alu 25 148 0 7 1155 585 315 51 5 chr11 74747553 74747767 -47096089 - B4A SINE B4 -68 224 1 7 1155 1050 201 59 0 chr11 74747793 74747997 -47095859 - B3 SINE B2 0 216 1 7 1155 1109 89 0 0 chr11 74748153 74748299 -47095557 - B1_Mus2 SINE Alu 0 147 2 7 1155 273 293 56 83 chr11 74748986 74749094 -47094762 - PB1D10 SINE Alu -7 110 6 7 1155 329 321 92 0 chr11 74749164 74749295 -47094561 - RSINE1 SINE B4 -21 144 2 7 1155 180 125 0 0 chr11 74749298 74749330 -47094526 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7 1155 236 127 73 0 chr11 74749355 74749393 -47094463 + T-rich Low_complexity Low_complexity 21 62 0 7 1155 1041 103 7 7 chr11 74749393 74749540 -47094316 - B1_Mus2 SINE Alu 0 147 1 7 1155 236 127 73 0 chr11 74749540 74749556 -47094300 + T-rich Low_complexity Low_complexity 5 20 0 7 1155 434 196 163 0 chr11 74749562 74749654 -47094202 - U6 snRNA snRNA 0 107 1 7 1155 233 119 24 0 chr11 74749683 74749725 -47094131 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 7 1155 918 122 50 0 chr11 74749726 74749865 -47093991 - B1_Mur4 SINE Alu 0 150 5 7 1155 211 0 0 81 chr11 74749873 74749910 -47093946 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1155 1232 39 0 0 chr11 74749910 74750065 -47093791 - B2_Mm2 SINE B2 -40 155 1 7 1155 422 122 27 0 chr11 74750174 74750248 -47093608 + (CATA)n Simple_repeat Simple_repeat 1 76 0 7 1155 760 265 31 0 chr11 74750248 74750444 -47093412 - B3 SINE B2 -13 203 2 7 1155 486 261 17 75 chr11 74750579 74750753 -47093103 - RSINE1 SINE B4 0 165 2 7 1155 1659 26 0 10 chr11 74750998 74751192 -47092664 - B2_Mm1a SINE B2 0 193 2 7 1155 343 54 348 18 chr11 74751196 74751308 -47092548 - B2_Mm2 SINE B2 0 195 47 7 1155 1158 101 6 0 chr11 74751345 74751514 -47092342 - B2_Mm1t SINE B2 -23 170 1 7 1155 477 179 107 121 chr11 74751523 74751663 -47092193 - B1_Mur1 SINE Alu -5 144 7 7 1155 287 255 146 10 chr11 74751993 74752096 -47091760 - PB1D10 SINE Alu 0 117 1 7 1155 824 254 29 24 chr11 74752134 74752344 -47091512 - ID_B1 SINE B4 -13 211 1 7 1155 1384 77 11 0 chr11 74752433 74752614 -47091242 - B2_Mm1t SINE B2 -9 184 2 7 1155 200 188 0 0 chr11 74752693 74752725 -47091131 + polypyrimidine Low_complexity Low_complexity 1 32 0 7 1155 1172 43 7 0 chr11 74752727 74752868 -47090988 - B1_Mus1 SINE Alu -6 142 1 7 1155 244 279 23 23 chr11 74752980 74753068 -47090788 - RSINE1 SINE B4 0 165 78 7 1155 358 318 75 15 chr11 74753125 74753259 -47090597 - RSINE1 SINE B4 -150 142 1 7 1155 484 172 30 0 chr11 74753284 74753383 -47090473 - B1F SINE Alu 0 149 48 7 1155 207 0 0 0 chr11 74753542 74753565 -47090291 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1155 1224 54 0 0 chr11 74753565 74753713 -47090143 - B1_Mus1 SINE Alu 0 148 1 7 1155 302 218 51 0 chr11 74753861 74753939 -47089917 - L1M3 LINE L1 -785 5389 5308 7 1155 1112 206 25 0 chr11 74753944 74754148 -47089708 + B3 SINE B2 3 211 -5 7 1155 745 283 134 39 chr11 74754179 74754484 -47089372 - MTE2b LTR MaLR -43 336 3 7 1155 466 248 26 0 chr11 74754624 74754737 -47089119 - ID_B1 SINE B4 -9 215 100 7 1155 514 293 102 64 chr11 74754762 74755244 -47088612 - L1M3 LINE L1 -1305 4835 4336 7 1155 1411 65 32 0 chr11 74755299 74755325 -47088531 - B2_Mm1a SINE B2 0 193 162 7 1155 402 21 0 0 chr11 74755325 74755372 -47088484 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 7 1155 1411 65 32 0 chr11 74755372 74755531 -47088325 - B2_Mm1a SINE B2 -32 161 3 7 1155 1213 129 42 9 chr11 74755863 74756075 -47087781 - URR1A DNA MER1_type 0 226 8 7 1155 695 193 21 0 chr11 74756132 74756272 -47087584 - B1_Mus1 SINE Alu -1 147 5 7 1155 368 296 6 76 chr11 74756272 74756291 -47087565 - ID_B1 SINE B4 0 221 75 8 1155 1214 39 0 0 chr11 74756291 74756447 -47087409 + B2_Mm2 SINE B2 2 157 -38 8 1155 387 0 0 0 chr11 74756447 74756490 -47087366 + (TAA)n Simple_repeat Simple_repeat 3 45 0 8 1155 340 239 0 27 chr11 74756492 74756565 -47087291 - ID_B1 SINE B4 -19 205 135 8 1155 209 237 34 0 chr11 74757091 74757150 -47086706 + (TCTG)n Simple_repeat Simple_repeat 3 63 0 8 1155 226 330 28 9 chr11 74757255 74757362 -47086494 - PB1 SINE Alu -18 109 1 8 1155 417 228 80 93 chr11 74757373 74757523 -47086333 - B1_Mur2 SINE Alu 0 149 2 8 1155 543 296 28 7 chr11 74757754 74757897 -47085959 + RSINE1 SINE B4 3 148 -17 8 1155 834 95 0 8 chr11 74757961 74758078 -47085778 + PB1D9 SINE Alu 5 120 0 8 1155 281 240 51 39 chr11 74758549 74758627 -47085229 + B1F1 SINE Alu 62 140 -9 8 1155 1352 81 16 5 chr11 74758748 74758934 -47084922 + B2_Mm1a SINE B2 2 189 -4 8 1155 234 0 0 0 chr11 74758960 74758986 -47084870 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 1155 412 280 88 0 chr11 74759839 74759964 -47083892 - B1F SINE Alu -12 137 2 8 1155 649 225 122 5 chr11 74760290 74760478 -47083378 - B3 SINE B2 -6 210 1 8 1155 1295 101 27 0 chr11 74760931 74761119 -47082737 + B2_Mm1t SINE B2 1 193 0 8 1155 317 296 55 16 chr11 74761155 74761282 -47082574 + B1F SINE Alu 12 143 -6 8 1155 247 312 12 24 chr11 74761513 74761595 -47082261 - ID2 SINE ID -1 82 2 8 1155 680 263 0 0 chr11 74761681 74761818 -47082038 + RSINE1 SINE B4 5 141 -24 8 1155 419 286 26 9 chr11 74761845 74761958 -47081898 - PB1D7 SINE Alu 0 120 6 8 1155 408 262 81 54 chr11 74762307 74762456 -47081400 - RSINE1 SINE B4 -10 155 3 8 1155 519 298 19 40 chr11 74762784 74763011 -47080845 - B4A SINE B4 0 292 70 8 1155 588 241 64 0 chr11 74763058 74763199 -47080657 - RSINE1 SINE B4 -13 152 3 8 1155 247 325 0 0 chr11 74763218 74763298 -47080558 - RSINE1 SINE B4 -8 157 78 8 1155 1464 59 21 0 chr11 74763316 74763502 -47080354 - B2_Mm2 SINE B2 -5 190 1 8 1155 34 24 0 0 chr11 74763639 74763680 -47080176 + AT_rich Low_complexity Low_complexity 1 41 0 8 1155 270 178 0 0 chr11 74763685 74763730 -47080126 - RSINE1 SINE B4 -41 124 80 8 1155 1131 96 0 0 chr11 74763769 74763915 -47079941 - B1_Mus1 SINE Alu -1 147 2 8 1155 559 307 13 7 chr11 74763980 74764131 -47079725 - ID_B1 SINE B4 -70 154 3 8 1155 469 252 86 129 chr11 74764131 74764363 -47079493 - ID_B1 SINE B4 -2 222 1 8 1155 22 24 0 45 chr11 74764499 74764520 -47079336 + AT_rich Low_complexity Low_complexity 1 21 0 8 1155 188 0 74 0 chr11 74764520 74764547 -47079309 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1155 1146 51 0 0 chr11 74764547 74764685 -47079171 - B1_Mus1 SINE Alu -10 138 1 8 1155 22 24 0 45 chr11 74764685 74764706 -47079150 + AT_rich Low_complexity Low_complexity 1 20 0 8 1155 3970 65 17 4 chr11 74764706 74765227 -47078629 - L1_Mus2 LINE L1 0 6566 6039 8 1155 1567 61 0 0 chr11 74765227 74765423 -47078433 + L1_Mus2 LINE L1 5829 6024 -542 8 1155 1095 127 17 0 chr11 74765424 74765597 -47078259 - B2_Mm2 SINE B2 -5 190 15 8 1155 549 165 107 50 chr11 74765648 74765788 -47078068 - B1_Mur2 SINE Alu 0 149 2 8 1155 2378 97 3 3 chr11 74765959 74766289 -47077567 - IAPEY3_LTR LTR ERVK -2 330 1 8 1155 1135 214 9 0 chr11 74766774 74766984 -47076872 - B3 SINE B2 -4 212 1 8 1155 458 149 10 21 chr11 74767025 74767121 -47076735 - Lx2 LINE L1 0 6997 6903 8 1155 312 189 0 42 chr11 74767295 74767367 -47076489 - RSINE1 SINE B4 -30 135 67 8 1155 451 257 0 17 chr11 74767435 74767550 -47076306 - PB1D9 SINE Alu -2 118 6 8 1155 327 291 47 37 chr11 74767456 74767563 -47076293 - ID_B1 SINE B4 -48 176 69 8 1155 229 299 21 75 chr11 74767685 74767779 -47076077 - MER58A DNA MER1_type -134 90 2 8 1155 276 283 56 96 chr11 74767822 74767947 -47075909 - PB1D9 SINE Alu 0 120 1 8 1155 388 182 89 22 chr11 74767991 74768081 -47075775 + MER82 DNA MER2_type 298 393 -260 8 1155 242 164 0 52 chr11 74768132 74768190 -47075666 + 4.5SRNA scRNA scRNA 32 86 -8 8 1155 701 58 0 72 chr11 74768143 74768254 -47075602 + B1_Mm SINE Alu 43 145 -2 8 1155 292 343 50 0 chr11 74768284 74768424 -47075432 + MER82 DNA MER2_type 426 572 -81 8 1155 255 181 81 35 chr11 74768757 74768843 -47075013 - MTEa LTR MaLR -7 372 283 8 1155 198 0 0 0 chr11 74769268 74769290 -47074566 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1155 1267 27 0 0 chr11 74769290 74769437 -47074419 - B1_Mus2 SINE Alu 0 147 1 8 1155 1071 82 0 0 chr11 74769507 74769654 -47074202 - B2_Mm2 SINE B2 -47 148 2 8 1155 336 111 0 0 chr11 74769680 74769734 -47074122 + (GTCTG)n Simple_repeat Simple_repeat 1 54 0 8 1155 309 207 154 57 chr11 74769734 74769857 -47073999 - B1_Mur1 SINE Alu -13 136 2 8 1155 348 237 16 58 chr11 74770007 74770128 -47073728 + PB1D7 SINE Alu 1 116 -4 8 1155 1117 75 0 20 chr11 74770186 74770336 -47073520 - B1_Mus1 SINE Alu 0 148 2 8 1155 200 188 0 0 chr11 74770381 74770413 -47073443 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 1155 701 180 8 8 chr11 74770413 74770542 -47073314 - B1_Mur4 SINE Alu 0 150 22 8 1155 768 264 6 6 chr11 74770613 74770781 -47073075 - B3A SINE B2 -30 168 1 8 1155 317 198 116 0 chr11 74771454 74771540 -47072316 + U6 snRNA snRNA 7 102 -5 8 1155 632 281 123 25 chr11 74771561 74771805 -47072051 - Lx8 LINE L1 0 7473 7206 8 1155 273 347 59 27 chr11 74772017 74772181 -47071675 + MIRb SINE MIR 7 177 -91 8 1155 735 44 0 0 chr11 74772276 74772367 -47071489 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 8 1155 1056 52 59 0 chr11 74772367 74772503 -47071353 - B1_Mus2 SINE Alu -3 144 1 8 1155 24 0 0 0 chr11 74772514 74772538 -47071318 + AT_rich Low_complexity Low_complexity 1 24 0 8 1155 1147 28 21 14 chr11 74774205 74774350 -47069506 + B1_Mus2 SINE Alu 2 147 0 8 1155 634 211 95 0 chr11 74774514 74774661 -47069195 - RSINE1 SINE B4 -3 162 2 8 1155 22 67 0 16 chr11 74774685 74774719 -47069137 + AT_rich Low_complexity Low_complexity 1 34 0 8 1155 406 242 180 36 chr11 74774719 74774749 -47069107 - B3A SINE B2 -7 191 163 8 1155 378 61 0 0 chr11 74774749 74774798 -47069058 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 1155 342 0 0 0 chr11 74774798 74774835 -47069021 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1155 406 242 180 36 chr11 74774835 74774970 -47068886 - B3A SINE B2 -36 162 2 8 1155 22 67 0 16 chr11 74774970 74774996 -47068860 + AT_rich Low_complexity Low_complexity 1 26 0 8 1155 405 302 50 0 chr11 74775019 74775138 -47068718 - B3 SINE B2 -78 138 14 8 1155 669 211 22 22 chr11 74775163 74775299 -47068557 + B1_Mur1 SINE Alu 8 143 -6 8 1155 374 342 99 30 chr11 74775456 74775718 -47068138 - B4A SINE B4 -3 289 10 8 1155 1245 36 0 0 chr11 74777872 74778010 -47065846 - B1_Mus2 SINE Alu -9 138 1 8 1155 588 242 102 12 chr11 74778258 74778425 -47065431 + B3A SINE B2 1 182 -16 8 1155 198 0 0 0 chr11 74778517 74778539 -47065317 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1155 1181 83 7 0 chr11 74778539 74778684 -47065172 - B1_Mus2 SINE Alu 0 147 2 8 1155 248 323 21 31 chr11 74778696 74778792 -47065064 + PB1D10 SINE Alu 21 115 -2 8 1155 577 230 17 26 chr11 74778804 74778920 -47064936 + PB1D9 SINE Alu 5 119 -1 8 1155 1219 43 0 0 chr11 74779783 74779921 -47063935 - B1_Mm SINE Alu -8 139 2 8 1155 951 234 24 24 chr11 74780007 74780213 -47063643 - B3 SINE B2 -6 210 5 8 1155 23 54 0 0 chr11 74780332 74780369 -47063487 + AT_rich Low_complexity Low_complexity 1 37 0 8 1155 748 285 11 11 chr11 74780386 74780567 -47063289 - B3A SINE B2 -16 182 2 8 1155 22 35 0 0 chr11 74780747 74780776 -47063080 + AT_rich Low_complexity Low_complexity 1 29 0 8 1155 935 91 121 0 chr11 74780836 74780968 -47062888 - B1_Mus1 SINE Alu 0 148 1 8 1155 1132 102 7 0 chr11 74781019 74781166 -47062690 + B1_Mus1 SINE Alu 1 148 0 8 1155 213 39 0 0 chr11 74781166 74781192 -47062664 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1155 1180 83 0 0 chr11 74781202 74781347 -47062509 + B1_Mus1 SINE Alu 2 146 -2 8 1155 763 184 21 12 chr11 74781369 74781552 -47062304 + B3 SINE B2 3 189 -6 8 1155 345 360 28 21 chr11 74781574 74781716 -47062140 + B4A SINE B4 1 143 -149 8 1155 363 121 0 0 chr11 74781801 74781859 -47061997 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 8 1155 262 277 45 30 chr11 74781906 74781973 -47061883 + ID4_ SINE ID 2 69 -14 8 1155 1221 61 0 39 chr11 74782970 74783123 -47060733 - B1_Mus2 SINE Alu 0 147 1 8 1155 279 276 113 11 chr11 74783143 74783238 -47060618 - PB1D10 SINE Alu -38 111 4 8 1155 487 221 92 0 chr11 74783482 74783613 -47060243 + MIR SINE MIR 89 231 -31 8 1155 1395 97 5 5 chr11 74783984 74784170 -47059686 - B2_Mm1t SINE B2 -7 186 1 8 1155 1015 168 127 0 chr11 74784301 74784498 -47059358 - URR1B DNA MER1_type -3 222 1 8 1155 263 216 32 54 chr11 74784534 74784627 -47059229 - Charlie5 DNA MER1_type -2509 115 25 8 1155 450 248 57 28 chr11 74784646 74784787 -47059069 - RSINE1 SINE B4 -15 150 6 8 1155 649 206 7 56 chr11 74785199 74785343 -47058513 + B1_Mur4 SINE Alu 1 137 -13 9 1155 233 307 34 130 chr11 74785239 74785347 -47058509 + B4 SINE B4 117 217 -75 9 1155 270 0 0 0 chr11 74785347 74785377 -47058479 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1155 233 307 34 130 chr11 74785377 74785394 -47058462 + B4 SINE B4 218 228 -64 9 1155 1139 212 39 19 chr11 74785394 74785601 -47058255 + B3 SINE B2 1 211 -5 9 1155 233 307 34 130 chr11 74785601 74785620 -47058236 + B4 SINE B4 229 247 -45 9 1155 1657 37 21 0 chr11 74785682 74785870 -47057986 - B2_Mm1t SINE B2 0 193 2 9 1155 264 319 41 57 chr11 74786052 74786175 -47057681 + L2 LINE L2 2738 2858 -561 9 1155 1441 81 5 11 chr11 74786380 74786567 -47057289 - B2_Mm1t SINE B2 -6 187 2 9 1155 313 237 106 67 chr11 74787489 74787513 -47056343 - RSINE1 SINE B4 -4 161 136 9 1155 228 35 0 0 chr11 74787513 74787542 -47056314 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 9 1155 313 237 106 67 chr11 74787542 74787621 -47056235 - RSINE1 SINE B4 -30 135 55 9 1155 389 208 52 0 chr11 74787720 74787797 -47056059 - B3A SINE B2 -115 83 3 9 1155 603 0 0 0 chr11 74787815 74787882 -47055974 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 9 1155 1139 56 28 0 chr11 74787887 74788029 -47055827 - B1_Mm SINE Alu -1 146 1 9 1155 312 300 0 48 chr11 74788127 74788211 -47055645 + B1_Mus2 SINE Alu 2 81 -66 9 1155 207 100 0 0 chr11 74788213 74788243 -47055613 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1155 1190 75 0 20 chr11 74789021 74789171 -47054685 - B1_Mus1 SINE Alu 0 148 2 9 1155 1697 27 21 0 chr11 74789183 74789369 -47054487 - B2_Mm1t SINE B2 -2 191 2 9 1155 451 291 104 0 chr11 74789401 74789535 -47054321 - B1F SINE Alu 0 149 2 9 1155 372 203 58 0 chr11 74789552 74789621 -47054235 - ID_B1 SINE B4 -3 221 149 9 1155 671 214 62 41 chr11 74789699 74789845 -47054011 - B1_Mur2 SINE Alu 0 149 1 9 1155 566 287 7 59 chr11 74789894 74790046 -47053810 - ID_B1 SINE B4 -2 222 79 9 1155 405 0 0 0 chr11 74790117 74790162 -47053694 + (TC)n Simple_repeat Simple_repeat 2 46 0 9 1155 207 0 0 0 chr11 74790162 74790184 -47053672 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1155 961 83 90 8 chr11 74790253 74790387 -47053469 + B1_Mus1 SINE Alu 1 145 -3 9 1155 246 32 0 0 chr11 74790387 74790418 -47053438 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1155 945 186 0 0 chr11 74790683 74790823 -47053033 + B1_Mur1 SINE Alu 5 144 -5 9 1155 491 234 159 82 chr11 74790837 74791019 -47052837 + B3A SINE B2 2 197 -1 9 1155 241 125 0 130 chr11 74791148 74791194 -47052662 + ID_B1 SINE B4 174 213 -11 9 1155 274 237 108 126 chr11 74791556 74791667 -47052189 + B4 SINE B4 83 191 -101 9 1155 512 162 59 120 chr11 74791569 74791701 -47052155 + PB1D9 SINE Alu 12 144 -6 9 1155 5542 66 30 0 chr11 74792122 74792800 -47051056 - Lx3_Mus LINE L1 -2 7007 6310 9 1155 351 248 19 47 chr11 74792993 74793099 -47050757 + PB1D10 SINE Alu 5 107 -10 9 1155 696 263 46 0 chr11 74793661 74793813 -47050043 - RSINE1 SINE B4 -4 161 3 9 1155 24 32 0 0 chr11 74793833 74793864 -47049992 + AT_rich Low_complexity Low_complexity 1 31 0 9 1155 421 194 111 16 chr11 74793867 74793993 -47049863 - B1_Mur2 SINE Alu -10 139 2 9 1155 1132 108 84 0 chr11 74794093 74794260 -47049596 + B2_Mm2 SINE B2 1 181 -14 9 1155 1035 60 252 0 chr11 74794486 74794637 -47049219 + B2_Mm1t SINE B2 2 190 -3 9 1155 243 0 0 0 chr11 74794656 74794683 -47049173 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1155 509 221 35 17 chr11 74796139 74796254 -47047602 - PB1D7 SINE Alu -1 119 3 9 1155 229 333 0 14 chr11 74797130 74797203 -47046653 - ID_B1 SINE B4 -48 176 105 9 1155 216 0 0 0 chr11 74797276 74797300 -47046556 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1155 1258 48 0 0 chr11 74797300 74797447 -47046409 - B1_Mus1 SINE Alu 0 148 2 9 1155 306 239 112 11 chr11 74797544 74797633 -47046223 - MER20 DNA MER1_type -112 107 10 9 1155 40 67 0 0 chr11 74797713 74797788 -47046068 + AT_rich Low_complexity Low_complexity 1 75 0 9 1155 653 267 18 18 chr11 74797876 74797957 -47045899 + ID SINE ID 2 82 -142 9 1155 280 228 61 71 chr11 74797957 74798056 -47045800 + B1F SINE Alu 1 98 -51 9 1155 192 152 0 0 chr11 74798056 74798089 -47045767 + G-rich Low_complexity Low_complexity 1 33 0 9 1155 609 260 103 0 chr11 74798194 74798340 -47045516 + RSINE1 SINE B4 1 161 -4 9 1155 374 36 36 0 chr11 74798341 74798396 -47045460 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 9 1155 530 326 38 59 chr11 74798550 74798736 -47045120 + B3A SINE B2 1 182 -16 9 1155 1491 87 11 0 chr11 74798763 74798948 -47044908 - B2_Mm2 SINE B2 -7 188 2 9 1155 24 0 0 0 chr11 74799033 74799057 -47044799 + AT_rich Low_complexity Low_complexity 1 24 0 9 1155 1727 16 16 0 chr11 74799815 74800004 -47043852 + B2_Mm1t SINE B2 2 193 0 9 1155 208 163 0 23 chr11 74800310 74800354 -47043502 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 9 1155 390 267 106 57 chr11 74800354 74800477 -47043379 - B1F1 SINE Alu -20 129 1 9 1155 245 339 58 51 chr11 74800477 74800491 -47043365 - ID_B1 SINE B4 -20 204 67 9 1155 24 0 0 0 chr11 74800570 74800594 -47043262 + AT_rich Low_complexity Low_complexity 1 24 0 9 1155 550 214 0 79 chr11 74800802 74800929 -47042927 - PB1D10 SINE Alu 0 117 1 9 1155 548 98 18 81 chr11 74801197 74801308 -47042548 - B1_Mur4 SINE Alu -1 149 46 9 1155 678 208 0 0 chr11 74801401 74801521 -47042335 - B1_Mur1 SINE Alu -1 148 29 9 1155 240 86 0 0 chr11 74802075 74802110 -47041746 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 9 1155 480 244 17 34 chr11 74803022 74803141 -47040715 - PB1D10 SINE Alu 0 117 1 9 1155 333 19 56 0 chr11 74803793 74803847 -47040009 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1155 287 185 138 9 chr11 74805133 74805212 -47038644 + B1_Mur1 SINE Alu 5 136 -13 9 1155 1262 161 0 35 chr11 74805468 74805699 -47038157 + Lx LINE L1 6432 6654 0 9 1155 484 248 76 0 chr11 74807974 74808079 -47035777 - PB1D7 SINE Alu -6 114 2 9 1155 1100 176 113 10 chr11 74809072 74809267 -47034589 + B3 SINE B2 1 215 -1 9 1155 417 241 106 0 chr11 74809473 74809590 -47034266 - B1_Mur3 SINE Alu -9 140 1 9 1155 3482 280 82 61 chr11 74809591 74810300 -47033556 - Lx8 LINE L1 -213 7260 6523 9 1155 225 0 0 0 chr11 74810300 74810325 -47033531 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 9 1155 3482 280 82 61 chr11 74810325 74811065 -47032791 - Lx8 LINE L1 -951 6522 5782 9 1155 342 0 0 0 chr11 74811076 74811114 -47032742 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1155 1206 28 0 0 chr11 74811114 74811258 -47032598 - B2_Mm2 SINE B2 -50 145 2 9 1155 1116 256 36 39 chr11 74811259 74811593 -47032263 - Lx8 LINE L1 -469 5828 5429 9 1155 698 218 14 34 chr11 74811593 74811740 -47032116 - B1_Mur1 SINE Alu -1 148 5 9 1155 938 269 50 72 chr11 74811740 74811772 -47032084 - Lx8 LINE L1 -807 5490 5469 9 1155 1545 65 16 0 chr11 74811772 74811956 -47031900 - B2_Mm2 SINE B2 -8 187 1 9 1155 613 258 71 75 chr11 74811965 74812217 -47031639 - L1ME1 LINE L1 -152 6027 5777 9 1155 306 232 0 79 chr11 74812293 74812382 -47031474 - B4 SINE B4 -203 89 8 9 1155 800 239 90 38 chr11 74812404 74812716 -47031140 - L1ME1 LINE L1 -389 5775 5446 9 1155 181 0 33 33 chr11 74812716 74812746 -47031110 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 9 1155 888 133 15 15 chr11 74812752 74812889 -47030967 - B1_Mus1 SINE Alu -11 137 1 9 1155 424 301 98 58 chr11 74812889 74813023 -47030833 - L1ME1 LINE L1 -894 5439 5306 9 1155 575 285 14 27 chr11 74813406 74813554 -47030302 + RSINE1 SINE B4 3 148 -17 9 1155 805 156 16 0 chr11 74813621 74813749 -47030107 - B1_Mur4 SINE Alu -6 144 15 9 1155 847 109 34 11 chr11 74813864 74814040 -47029816 + CT-rich Low_complexity Low_complexity 1 180 0 9 1155 331 38 57 0 chr11 74814040 74814093 -47029763 + (TC)n Simple_repeat Simple_repeat 1 56 0 9 1155 276 232 229 10 chr11 74814095 74814191 -47029665 - PB1D7 SINE Alu -3 117 1 9 1155 1017 214 43 24 chr11 74815377 74815588 -47028268 - B3 SINE B2 0 216 2 9 1155 447 115 0 77 chr11 74815602 74815706 -47028150 - Lx LINE L1 0 6654 6559 9 1155 27 73 0 0 chr11 74815745 74815800 -47028056 + AT_rich Low_complexity Low_complexity 1 55 0 9 1155 1224 62 0 7 chr11 74815804 74815951 -47027905 + B1_Mm SINE Alu 2 147 0 9 1155 210 114 22 22 chr11 74815951 74815996 -47027860 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 9 1155 4857 155 26 0 chr11 74815996 74816817 -47027039 - L1_Mm LINE L1 -282 5601 4760 9 1155 1238 217 0 0 chr11 74816827 74817034 -47026822 - B3 SINE B2 -9 207 1 9 1155 186 43 0 0 chr11 74817042 74817065 -47026791 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 9 1155 550 293 20 60 chr11 74817069 74817218 -47026638 - RSINE1 SINE B4 0 165 23 9 1155 403 363 89 30 chr11 74817310 74817822 -47026034 + L2a LINE L2 2798 3342 -84 9 1155 1214 215 9 0 chr11 74817822 74818036 -47025820 - B3 SINE B2 0 216 1 9 1155 341 289 96 0 chr11 74818587 74818691 -47025165 - PB1D10 SINE Alu -1 116 3 9 1155 273 29 0 0 chr11 74818748 74818782 -47025074 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 9 1155 685 213 36 7 chr11 74818791 74818928 -47024928 - B1_Mur2 SINE Alu -6 143 3 9 1155 279 0 0 0 chr11 74818940 74818971 -47024885 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1155 1298 42 0 0 chr11 74818971 74819115 -47024741 - B1_Mus1 SINE Alu -3 145 2 9 1155 6914 219 57 38 chr11 74819344 74821124 -47022732 - Lx7 LINE L1 -327 7369 5533 9 1155 1031 128 97 23 chr11 74821421 74821597 -47022259 + B2_Mm2 SINE B2 2 190 -5 9 1155 287 271 63 63 chr11 74821679 74821709 -47022147 - ID_B1 SINE B4 0 224 188 1 1155 1118 93 0 0 chr11 74821709 74821849 -47022007 - B1_Mus1 SINE Alu -8 140 1 1 1155 287 271 63 63 chr11 74821849 74821878 -47021978 - ID_B1 SINE B4 -37 187 84 1 1155 338 288 25 12 chr11 74821878 74821959 -47021897 - PB1D10 SINE Alu -33 84 3 1 1155 421 254 109 12 chr11 74822011 74822131 -47021725 - ID_B1 SINE B4 -164 128 1 1 1155 344 214 11 0 chr11 74822147 74822236 -47021620 - ID_B1 SINE B4 -2 222 133 1 1155 242 246 61 99 chr11 74822236 74822273 -47021583 - B1_Mur2 SINE Alu 0 144 24 1 1155 404 195 0 61 chr11 74822250 74822332 -47021524 - ID4_ SINE ID -2 81 5 1 1155 376 178 466 14 chr11 74822354 74822502 -47021354 - B3 SINE B2 0 216 2 1 1155 769 186 31 0 chr11 74822551 74822680 -47021176 - B1_Mus1 SINE Alu -15 133 1 1 1155 6907 80 28 6 chr11 74822793 74823751 -47020105 - L1_Mus3 LINE L1 0 6638 5691 1 1155 670 290 89 58 chr11 74823785 74824214 -47019642 - L1MC1 LINE L1 -28 6305 5864 1 1155 180 0 0 0 chr11 74824220 74824240 -47019616 + (GTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1155 712 233 22 8 chr11 74824240 74824374 -47019482 - B1_Mur1 SINE Alu -13 136 1 1 1155 459 212 54 9 chr11 74824384 74824540 -47019316 - B3A SINE B2 -23 172 2 1 1155 370 343 24 5 chr11 74824546 74824754 -47019102 - L1MC1 LINE L1 -530 5803 5592 1 1155 450 0 0 0 chr11 74824775 74824825 -47019031 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1155 444 293 37 8 chr11 74824955 74825089 -47018767 - B4A SINE B4 -154 138 1 1 1155 460 248 27 18 chr11 74825095 74825206 -47018650 - PB1D10 SINE Alu -4 113 2 1 1155 232 235 0 38 chr11 74825579 74825632 -47018224 - RSINE1 SINE B4 -113 52 2 1 1155 252 0 0 0 chr11 74826232 74826260 -47017596 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1155 246 331 91 49 chr11 74826260 74826403 -47017453 - B3A SINE B2 -27 171 23 1 1155 209 122 0 47 chr11 74826867 74826910 -47016946 + CT-rich Low_complexity Low_complexity 4 44 0 1 1155 186 43 0 0 chr11 74827410 74827433 -47016423 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1155 349 222 0 0 chr11 74827961 74828024 -47015832 + ID4 SINE ID 3 65 -18 1 1155 315 71 0 0 chr11 74828034 74828076 -47015780 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1155 369 0 0 0 chr11 74829779 74829820 -47014036 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1155 621 282 27 18 chr11 74831045 74831228 -47012628 - ID_B1 SINE B4 -21 271 78 1 1155 223 195 0 24 chr11 74831740 74831782 -47012074 - B1F2 SINE Alu -87 62 22 1 1155 212 283 50 0 chr11 74831793 74831853 -47012003 + PB1D7 SINE Alu 36 98 -22 1 1155 237 239 113 0 chr11 74831850 74831921 -47011935 + ID_B1 SINE B4 145 223 -1 1 1155 884 177 17 21 chr11 74831931 74832126 -47011730 + B3 SINE B2 2 194 -1 1 1155 235 276 126 0 chr11 74832436 74832523 -47011333 - ORR1E LTR MaLR -223 136 39 1 1155 1579 188 129 37 chr11 74832841 74833189 -47010667 - ORR1C2 LTR MaLR 0 384 5 1 1155 227 263 26 13 chr11 74833193 74833270 -47010586 + CT-rich Low_complexity Low_complexity 1 78 0 1 1155 461 206 19 38 chr11 74833270 74833376 -47010480 - PB1D9 SINE Alu -8 112 9 1 1155 221 179 0 0 chr11 74833454 74833493 -47010363 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1155 536 235 0 35 chr11 74833493 74833627 -47010229 - B1_Mm SINE Alu -19 129 1 1 1155 198 87 43 21 chr11 74833668 74833715 -47010141 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1155 1196 115 22 6 chr11 74833779 74833962 -47009894 - B2_Mm2 SINE B2 -6 189 4 1 1155 507 208 0 10 chr11 74833966 74834063 -47009793 - RSINE1 SINE B4 -67 98 3 1 1155 22 35 0 0 chr11 74834066 74834095 -47009761 + AT_rich Low_complexity Low_complexity 1 29 0 1 1155 359 233 0 14 chr11 74834127 74834201 -47009655 - PB1D10 SINE Alu -39 78 6 1 1155 625 265 82 19 chr11 74834288 74834557 -47009299 - L1M5 LINE L1 -355 5824 5539 1 1155 8101 151 36 28 chr11 74834558 74835925 -47007931 - Lx5 LINE L1 0 7050 5673 1 1155 1127 48 7 20 chr11 74835925 74836074 -47007782 + B1_Mm SINE Alu 1 147 0 1 1155 766 243 28 64 chr11 74836074 74836115 -47007741 - Lx9 LINE L1 -1973 5671 5641 1 1155 368 167 0 0 chr11 74836088 74836142 -47007714 - L1_Mm LINE L1 -282 5601 5548 1 1155 243 103 0 0 chr11 74836144 74836183 -47007673 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1155 1261 139 399 0 chr11 74836183 74836461 -47007395 - L1_Mur2 LINE L1 -200 5677 5289 1 1155 1187 76 0 0 chr11 74836492 74836649 -47007207 - B2_Mm2 SINE B2 -37 158 2 1 1155 4014 66 74 0 chr11 74836675 74837204 -47006652 - Lx3_Mus LINE L1 0 7009 6442 1 1155 1026 144 5 22 chr11 74837204 74837388 -47006468 - L1_Mur2 LINE L1 -581 5296 5116 1 1155 892 93 7 21 chr11 74837398 74837541 -47006315 - B2_Mm2 SINE B2 -18 177 37 1 1155 438 81 316 26 chr11 74837556 74837670 -47006186 - B2_Mm2 SINE B2 -2 193 47 1 1155 1161 136 11 0 chr11 74837717 74837894 -47005962 - B2_Mm1t SINE B2 -14 179 1 1 1155 6353 120 60 19 chr11 74837901 74838400 -47005456 - L1_Mur2 LINE L1 -771 5106 4591 1 1155 2293 81 58 0 chr11 74838400 74838709 -47005147 - ORR1A2 LTR MaLR 0 327 1 1 1155 6353 120 60 19 chr11 74838709 74839285 -47004571 - L1_Mur2 LINE L1 -1287 4590 3988 1 1155 818 144 0 0 chr11 74839313 74839438 -47004418 + B1_Mus1 SINE Alu 11 135 -13 1 1155 294 286 92 38 chr11 74839465 74839650 -47004206 - L1M5 LINE L1 -649 5530 5336 1 1155 820 333 13 40 chr11 74839673 74839973 -47003883 + B4A SINE B4 1 292 0 1 1155 411 167 0 0 chr11 74839996 74840086 -47003770 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1155 452 153 19 47 chr11 74840108 74840211 -47003645 - B1_Mur4 SINE Alu -7 113 23 1 1155 361 269 19 28 chr11 74841113 74841220 -47002636 + PB1D9 SINE Alu 13 118 -2 1 1155 759 242 59 20 chr11 74841229 74841431 -47002425 + B3 SINE B2 6 215 -1 1 1155 281 253 0 107 chr11 74841444 74841528 -47002328 + MT2B LTR ERVL 163 237 -364 1 1155 353 273 27 18 chr11 74841463 74841578 -47002278 + PB1D9 SINE Alu 18 133 -17 1 1155 234 361 84 4 chr11 74841702 74841941 -47001915 - L1MD1 LINE L1 -204 6155 5898 1 1155 699 218 28 14 chr11 74841949 74842093 -47001763 - ID_B1 SINE B4 0 224 79 1 144 1196 252 97 40 chr11 74842093 74842797 -47001059 - L1MD1 LINE L1 -335 5907 5158 1 1156 639 233 142 5 chr11 74842822 74843012 -47000844 - B3 SINE B2 0 216 1 1 1156 219 69 0 0 chr11 74843028 74843057 -47000799 + (TCC)n Simple_repeat Simple_repeat 2 30 0 1 1156 706 233 25 60 chr11 74843057 74843258 -47000598 - B3 SINE B2 0 216 23 1 1156 550 218 18 0 chr11 74843283 74843393 -47000463 - PB1D9 SINE Alu -7 113 2 1 1156 344 219 28 103 chr11 74843297 74843404 -47000452 - MT2B LTR ERVL -351 250 152 1 1156 437 214 0 72 chr11 74843473 74843584 -47000272 + PB1D9 SINE Alu 18 120 0 1 1156 246 156 0 0 chr11 74843586 74843631 -47000225 + GA-rich Low_complexity Low_complexity 3 47 0 1 1156 302 258 0 0 chr11 74843698 74843760 -47000096 + B3 SINE B2 128 189 -27 1 1156 354 86 0 157 chr11 74843796 74843813 -47000043 - B2_Mm1t SINE B2 -8 185 175 1 1156 1217 55 0 0 chr11 74843813 74843958 -46999898 + B1_Mm SINE Alu 1 145 -2 1 1156 198 0 0 0 chr11 74843958 74843980 -46999876 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1156 354 86 0 157 chr11 74843980 74844044 -46999812 - B2_Mm1t SINE B2 -19 174 117 1 1156 300 338 22 15 chr11 74845353 74845488 -46998368 - ID_B1 SINE B4 -6 218 83 1 1156 217 254 65 48 chr11 74845634 74845696 -46998160 - ID2 SINE ID -19 64 2 1 1156 216 293 0 0 chr11 74847225 74847283 -46996573 + C-rich Low_complexity Low_complexity 5 62 0 1 1156 264 143 0 0 chr11 74847997 74848053 -46995803 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 1 1156 203 175 0 0 chr11 74848054 74848094 -46995762 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1156 876 48 176 0 chr11 74848796 74848921 -46994935 - B1_Mus2 SINE Alu 0 147 1 1 1156 580 322 7 0 chr11 74849543 74849695 -46994161 - RSINE1 SINE B4 -10 155 3 1 1156 234 370 10 20 chr11 74850864 74850966 -46992890 + Lx8 LINE L1 7214 7314 -159 1 1156 233 286 28 28 chr11 74851045 74851117 -46992739 + Lx8 LINE L1 7283 7354 -119 1 1156 264 276 181 0 chr11 74851208 74851324 -46992532 + B3 SINE B2 80 216 0 1 1156 24 32 0 0 chr11 74851463 74851494 -46992362 + AT_rich Low_complexity Low_complexity 1 31 0 1 1156 690 200 0 15 chr11 74851644 74851776 -46992080 + B3 SINE B2 1 130 -86 1 1156 36 0 0 0 chr11 74851858 74851894 -46991962 + AT_rich Low_complexity Low_complexity 1 36 0 1 1156 720 156 73 15 chr11 74852508 74852519 -46991337 - B1_Mur1 SINE Alu -1 148 138 1 1156 312 27 0 0 chr11 74852519 74852556 -46991300 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1 1156 720 156 73 15 chr11 74852556 74852681 -46991175 - B1_Mur1 SINE Alu -12 137 5 1 1156 1069 58 51 0 chr11 74852725 74852862 -46990994 + B1_Mus1 SINE Alu 5 148 0 1 1156 975 219 28 9 chr11 74852875 74853087 -46990769 + B3 SINE B2 1 216 0 1 1156 1120 63 28 0 chr11 74853133 74853275 -46990581 - B1_Mm SINE Alu 0 147 2 1 1156 239 0 0 31 chr11 74853349 74853381 -46990475 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1 1156 1148 52 0 0 chr11 74853381 74853517 -46990339 - B1_Mus1 SINE Alu -11 137 2 1 1156 319 282 115 58 chr11 74853872 74854011 -46989845 + ID_B1 SINE B4 78 224 0 1 1156 366 23 0 0 chr11 74854044 74854087 -46989769 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1156 305 265 65 19 chr11 74854139 74854293 -46989563 - L1MC4 LINE L1 -69 7973 7813 1 1156 298 232 43 0 chr11 74854319 74854388 -46989468 + ID4_ SINE ID 1 72 -11 1 1156 608 289 40 23 chr11 74854428 74854605 -46989251 + B3A SINE B2 1 180 -18 1 1156 22 35 0 0 chr11 74854622 74854651 -46989205 + AT_rich Low_complexity Low_complexity 1 29 0 1 1156 240 326 0 0 chr11 74854651 74854737 -46989119 - L1MC4 LINE L1 -260 7782 7697 1 1156 418 277 3 22 chr11 74854737 74854858 -46988998 - B1_Mus2 SINE Alu -6 114 1 1 1156 894 191 119 0 chr11 74854900 74855094 -46988762 - L1MC4 LINE L1 -364 7678 7462 1 1156 843 285 9 32 chr11 74856676 74856897 -46986959 - B3 SINE B2 0 216 1 1 1156 200 219 46 15 chr11 74857022 74857087 -46986769 + (TCTTG)n Simple_repeat Simple_repeat 3 69 0 1 1156 614 237 106 28 chr11 74857111 74857328 -46986528 + MER58B DNA MER1_type 61 294 -47 1 1156 226 286 11 21 chr11 74857426 74857519 -46986337 + CT-rich Low_complexity Low_complexity 4 95 0 1 1156 1190 68 0 0 chr11 74858606 74858753 -46985103 - B1_Mus2 SINE Alu 0 147 1 1 1156 249 164 41 0 chr11 74858982 74859055 -46984801 + CT-rich Low_complexity Low_complexity 3 78 0 1 1156 524 263 45 0 chr11 74859411 74859544 -46984312 - B1F SINE Alu -10 139 1 1 1156 456 226 147 9 chr11 74863939 74864055 -46979801 + B1F SINE Alu 1 132 -17 1 1156 606 28 0 0 chr11 74864427 74864499 -46979357 + (TCC)n Simple_repeat Simple_repeat 2 73 0 1 1156 305 252 120 10 chr11 74866514 74866614 -46977242 - MER81 DNA AcHobo -2 112 2 1 1156 251 175 0 17 chr11 74867704 74867762 -46976094 + GA-rich Low_complexity Low_complexity 1 57 0 1 1156 558 256 15 8 chr11 74868375 74868509 -46975347 - ID_B1 SINE B4 0 224 90 1 1156 302 234 0 0 chr11 74868628 74868692 -46975164 + B3 SINE B2 67 130 -86 1 1156 23 0 0 0 chr11 74868728 74868751 -46975105 + AT_rich Low_complexity Low_complexity 1 23 0 1 1156 315 0 0 0 chr11 74868835 74868870 -46974986 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1156 575 222 9 0 chr11 74868870 74868978 -46974878 - PB1D9 SINE Alu -10 110 2 1 1156 7021 85 59 2 chr11 74869301 74870831 -46973025 - L1_Mus3 LINE L1 -3 6635 5021 1 1156 1031 60 38 0 chr11 74870831 74870964 -46972892 - B1_Mus1 SINE Alu -10 138 1 1 1156 359 246 37 60 chr11 74871091 74871225 -46972631 + ID_B1 SINE B4 93 223 -1 1 1156 705 263 88 0 chr11 74871346 74871540 -46972316 + B3 SINE B2 3 213 -3 1 1156 200 261 58 50 chr11 74872164 74872285 -46971571 + L2 LINE L2 2525 2646 -773 1 1156 378 297 87 37 chr11 74872367 74872528 -46971328 + ID_B1 SINE B4 53 221 -3 1 1156 259 293 53 120 chr11 74872657 74872882 -46970974 + L2 LINE L2 2867 3076 -343 1 1156 782 183 149 41 chr11 74873690 74873884 -46969972 + B3 SINE B2 2 216 0 1 1156 477 278 163 17 chr11 74874022 74874194 -46969662 - B3A SINE B2 0 198 2 1 1156 863 201 0 7 chr11 74874490 74874640 -46969216 + B1_Mur2 SINE Alu 1 149 0 1 1156 23 0 0 0 chr11 74874653 74874676 -46969180 + AT_rich Low_complexity Low_complexity 1 23 0 1 1156 278 118 0 38 chr11 74874814 74874867 -46968989 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1156 327 65 0 0 chr11 74874868 74874914 -46968942 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1156 277 214 24 3 chr11 74874914 74874985 -46968871 + PB1D10 SINE Alu 21 94 -26 1 1156 737 191 0 0 chr11 74874989 74875120 -46968736 + B1_Mus2 SINE Alu 17 147 0 1 1156 369 239 65 59 chr11 74875148 74875317 -46968539 + L1MC5 LINE L1 7759 7928 -33 1 1156 548 333 7 0 chr11 74875379 74875520 -46968336 - RSINE1 SINE B4 -14 151 10 1 1156 335 230 0 13 chr11 74875791 74875866 -46967990 + PB1 SINE Alu 47 120 -7 1 1156 1088 36 58 7 chr11 74876151 74876290 -46967566 + B1_Mus2 SINE Alu 2 147 0 1 1156 231 208 42 0 chr11 74876400 74876448 -46967408 - B1F2 SINE Alu -98 51 2 1 1156 210 309 29 0 chr11 74876402 74876470 -46967386 - B4 SINE B4 -158 134 65 1 1156 749 188 171 5 chr11 74876570 74876757 -46967099 + ID_B1 SINE B4 6 223 -1 1 1156 889 151 0 0 chr11 74876840 74876979 -46966877 + B1_Mur4 SINE Alu 11 149 -1 1 1156 1009 57 0 84 chr11 74876979 74877133 -46966723 + L1_Mus1 LINE L1 6427 6567 0 1 1156 202 179 0 35 chr11 74877160 74877218 -46966638 + GA-rich Low_complexity Low_complexity 1 56 0 1 1156 1194 68 0 0 chr11 74877578 74877725 -46966131 - B1_Mus2 SINE Alu 0 147 1 1 1156 358 274 186 0 chr11 74877765 74877889 -46965967 - RSINE1 SINE B4 -15 150 4 1 1156 667 235 144 0 chr11 74878089 74878276 -46965580 - B3 SINE B2 0 216 3 1 1156 281 333 101 18 chr11 74878351 74878519 -46965337 - MER5A DNA MER1_type -7 182 1 1 1156 1278 81 17 23 chr11 74878955 74879116 -46964740 + B2_Mm2 SINE B2 1 161 -34 1 1156 198 0 0 0 chr11 74879116 74879138 -46964718 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1156 1278 81 17 23 chr11 74879138 74879153 -46964703 + B2_Mm2 SINE B2 162 176 -19 1 1156 1318 80 17 0 chr11 74880489 74880664 -46963192 + B2_Mm2 SINE B2 4 181 -14 1 1156 1054 103 139 0 chr11 74880664 74880829 -46963027 + B2_Mm1a SINE B2 2 189 -4 1 1156 1158 82 0 0 chr11 74880959 74881106 -46962750 - B1_Mm SINE Alu 0 147 1 1 1156 232 253 62 17 chr11 74881137 74881314 -46962542 - L1M4 LINE L1 -841 5305 5121 1 1156 594 190 147 42 chr11 74881451 74881594 -46962262 + B3A SINE B2 3 160 -38 1 1156 330 26 0 0 chr11 74881598 74881637 -46962219 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1156 921 281 53 53 chr11 74881878 74882163 -46961693 - B4 SINE B4 -6 286 2 1 1156 1410 100 5 0 chr11 74882302 74882492 -46961364 - B2_Mm1a SINE B2 -1 192 2 1 1156 369 147 29 0 chr11 74882688 74882756 -46961100 - B1F1 SINE Alu 0 149 80 1 1156 878 262 126 79 chr11 74882763 74883207 -46960649 - MT2A LTR ERVL -68 465 1 1 1156 183 42 0 0 chr11 74883258 74883282 -46960574 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1156 615 279 0 7 chr11 74883282 74883423 -46960433 - B1F SINE Alu -9 140 1 1 1156 322 179 157 19 chr11 74883488 74883596 -46960260 - L1MEg LINE L1 -5200 884 762 1 1156 230 246 32 16 chr11 74883637 74883699 -46960157 + PB1D10 SINE Alu 24 86 -31 1 1156 288 53 0 0 chr11 74884009 74884047 -46959809 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1156 467 220 9 44 chr11 74884047 74884161 -46959695 - PB1D9 SINE Alu -10 110 1 1 1156 272 279 170 44 chr11 74884161 74884182 -46959674 - ID_B1 SINE B4 -10 214 63 1 1156 261 253 232 0 chr11 74884805 74884900 -46958956 - PB1D10 SINE Alu 0 117 1 1 1156 508 224 149 2 chr11 74884932 74885084 -46958772 + B3 SINE B2 2 185 -31 1 1156 243 0 0 0 chr11 74885100 74885127 -46958729 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1156 696 177 329 0 chr11 74885505 74885663 -46958193 + B3 SINE B2 1 210 -6 1 1156 899 147 17 34 chr11 74885822 74885998 -46957858 + B2_Mm2 SINE B2 9 181 -14 1 1156 681 224 14 7 chr11 74886532 74886676 -46957180 - RSINE1 SINE B4 -17 148 4 1 1156 301 302 32 65 chr11 74888740 74888864 -46954992 + PB1D7 SINE Alu 1 120 0 1 1156 180 0 0 0 chr11 74889421 74889441 -46954415 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1156 1230 54 0 0 chr11 74889441 74889588 -46954268 - B1_Mm SINE Alu 0 147 1 1 1156 428 234 122 47 chr11 74889630 74889778 -46954078 - RSINE1 SINE B4 -6 159 1 1 1156 1907 264 105 45 chr11 74889786 74890282 -46953574 - L1ME1 LINE L1 -78 6101 5545 1 1156 288 0 0 0 chr11 74890282 74890314 -46953542 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 1 1156 1907 264 105 45 chr11 74890314 74890572 -46953284 - L1ME1 LINE L1 -635 5544 5302 1 1156 292 271 0 0 chr11 74890576 74890646 -46953210 + ID_B1 SINE B4 86 155 -69 1 1156 867 268 15 0 chr11 74890669 74890867 -46952989 - ID_B1 SINE B4 -8 216 16 1 1156 291 251 29 20 chr11 74890869 74890973 -46952883 - L1ME1 LINE L1 -850 5296 5192 1 1156 275 232 99 28 chr11 74891667 74891738 -46952118 - PB1D10 SINE Alu -33 84 9 1 1156 626 249 38 62 chr11 74892671 74892699 -46951157 - B3 SINE B2 -11 205 177 1 1156 213 39 0 0 chr11 74892699 74892725 -46951131 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1156 692 233 9 40 chr11 74892725 74892906 -46950950 - B3A SINE B2 -40 176 1 1 1156 201 229 0 0 chr11 74893151 74893199 -46950657 + CT-rich Low_complexity Low_complexity 1 48 0 1 1156 710 277 149 0 chr11 74893278 74893520 -46950336 - B4A SINE B4 -10 282 5 1 1156 566 197 163 16 chr11 74893717 74893846 -46950010 + B1_Mur2 SINE Alu 2 149 0 1 1156 188 67 0 32 chr11 74894155 74894186 -46949670 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1156 180 0 0 0 chr11 74894301 74894321 -46949535 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1156 744 202 0 0 chr11 74894321 74894450 -46949406 - B1_Mur1 SINE Alu -20 129 1 1 1156 243 279 8 119 chr11 74894346 74894464 -46949392 - MT2B LTR ERVL -344 257 153 1 1156 1223 226 98 52 chr11 74894481 74894816 -46949040 - L1MB3 LINE L1 0 6183 5823 1 1156 1269 34 0 0 chr11 74894816 74894962 -46948894 - B1_Mus2 SINE Alu 0 147 2 1 1156 1223 226 98 52 chr11 74894962 74895046 -46948810 - L1MB3 LINE L1 -361 5822 5745 1 1156 225 65 0 0 chr11 74895058 74895089 -46948767 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1156 685 208 0 0 chr11 74895092 74895212 -46948644 - B3 SINE B2 -24 192 73 1 1156 218 345 0 0 chr11 74895245 74895300 -46948556 - ID4 SINE ID -27 56 2 1 1156 758 205 25 64 chr11 74895318 74895521 -46948335 + B3A SINE B2 4 198 0 1 1156 348 342 6 37 chr11 74895618 74895782 -46948074 + MIRc SINE MIR 86 244 -24 1 1156 407 268 89 8 chr11 74896634 74896758 -46947098 - ID_B1 SINE B4 -9 215 82 1 1156 24 32 0 0 chr11 74896888 74896919 -46946937 + AT_rich Low_complexity Low_complexity 1 31 0 1 1156 189 0 0 0 chr11 74897435 74897456 -46946400 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1156 1286 14 0 0 chr11 74897456 74897602 -46946254 - B1_Mm SINE Alu 0 147 2 1 1156 464 236 7 42 chr11 74897627 74897748 -46946108 - PB1D10 SINE Alu 0 127 1 1 1156 325 279 73 16 chr11 74897862 74897986 -46945870 - MIRb SINE MIR -99 169 39 1 1156 219 69 0 0 chr11 74898012 74898041 -46945815 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1156 638 173 88 22 chr11 74898068 74898204 -46945652 - B1_Mur2 SINE Alu 0 149 5 1 1156 1164 55 7 0 chr11 74898239 74898385 -46945471 - B1_Mus1 SINE Alu 0 148 2 1 1156 378 0 0 0 chr11 74898466 74898508 -46945348 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1156 766 195 122 33 chr11 74898523 74898703 -46945153 - B3A SINE B2 -2 196 1 1 1156 513 338 62 68 chr11 74899478 74899770 -46944086 - B4 SINE B4 -2 290 1 1 1156 272 336 33 25 chr11 74899811 74899933 -46943923 - RSINE1 SINE B4 -31 134 12 1 1156 286 333 11 0 chr11 74899986 74900073 -46943783 - RSINE1 SINE B4 0 165 78 1 1156 556 182 18 18 chr11 74900104 74900216 -46943640 + PB1D9 SINE Alu 9 120 0 1 1156 1187 111 38 27 chr11 74900219 74900405 -46943451 + B2_Mm2 SINE B2 1 188 -7 1 1156 369 250 152 43 chr11 74900405 74900589 -46943267 - L1MB8 LINE L1 -48 6136 5933 1 1156 333 0 0 0 chr11 74900621 74900658 -46943198 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1156 339 302 71 0 chr11 74900683 74900809 -46943047 - ID_B1 SINE B4 -7 217 83 1 1156 316 282 27 18 chr11 74902216 74902328 -46941528 - ID_B1 SINE B4 -109 115 3 1 1156 1318 262 89 43 chr11 74902332 74902815 -46941041 - L1MB8 LINE L1 -240 5938 5434 1 1156 596 211 77 20 chr11 74902826 74903018 -46940838 - B3A SINE B2 -4 212 2 1 1156 227 130 146 18 chr11 74903022 74903077 -46940779 - B3 SINE B2 -1 215 154 1 1156 633 239 0 7 chr11 74903076 74903211 -46940645 - B1_Mur2 SINE Alu -14 135 2 1 1156 21 0 0 0 chr11 74903225 74903246 -46940610 + AT_rich Low_complexity Low_complexity 1 21 0 1 1156 233 86 51 17 chr11 74903274 74903333 -46940523 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1156 1365 104 16 0 chr11 74903400 74903592 -46940264 - B2_Mm2 SINE B2 0 195 1 1 1156 322 181 109 11 chr11 74903645 74903755 -46940101 - B1_Mur1 SINE Alu -2 147 2 1 1156 192 77 0 0 chr11 74903779 74903805 -46940051 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 1156 681 184 0 32 chr11 74903906 74904091 -46939765 + CT-rich Low_complexity Low_complexity 1 179 0 1 1156 858 144 0 0 chr11 74904143 74904282 -46939574 - B1_Mur4 SINE Alu 0 150 12 1 1156 245 297 0 105 chr11 74904188 74904312 -46939544 - MT2B LTR ERVL -344 257 147 1 1156 437 311 8 0 chr11 74904315 74904434 -46939422 + MER3 DNA MER1_type 6 125 -84 1 1156 251 317 95 24 chr11 74904505 74904673 -46939183 + MER5A DNA MER1_type 7 186 -3 1 1156 533 284 39 0 chr11 74904821 74904976 -46938880 + RSINE1 SINE B4 1 161 -4 1 1156 352 37 37 0 chr11 74904982 74905036 -46938820 + (ATTG)n Simple_repeat Simple_repeat 3 58 0 1 1156 381 178 30 37 chr11 74905071 74905205 -46938651 + (CAGA)n Simple_repeat Simple_repeat 3 135 0 1 1156 1507 58 15 30 chr11 74905228 74905425 -46938431 + B2_Mm2 SINE B2 1 194 -1 1 1156 1629 42 0 0 chr11 74907088 74907280 -46936576 - B2_Mm1a SINE B2 0 193 2 1 1156 377 260 85 19 chr11 74907696 74907802 -46936054 + PB1D9 SINE Alu 1 113 -7 1 1156 310 55 35 35 chr11 74908055 74908112 -46935744 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 1 1156 307 281 112 0 chr11 74908115 74908204 -46935652 - PB1D10 SINE Alu -18 99 1 1 1156 251 254 14 43 chr11 74908825 74908895 -46934961 + ID2 SINE ID 5 72 -11 1 1156 500 157 1 0 chr11 74908879 74908966 -46934890 + B1_Mur4 SINE Alu 21 108 -12 1 1156 289 303 48 34 chr11 74909030 74909177 -46934679 - MER3 DNA MER1_type -59 150 2 1 1156 1271 69 5 59 chr11 74909286 74909472 -46934384 + B2_Mm2 SINE B2 4 179 -16 1 1156 575 209 93 0 chr11 74909512 74909641 -46934215 + B1_Mus2 SINE Alu 7 147 0 1 1156 377 324 42 14 chr11 74909713 74909857 -46933999 - RSINE1 SINE B4 -3 162 15 1 1156 274 304 13 0 chr11 74909959 74910038 -46933818 - RSINE1 SINE B4 -75 90 11 1 1156 821 227 29 6 chr11 74910361 74910534 -46933322 - B3 SINE B2 -1 215 39 1 1156 738 300 87 8 chr11 74911117 74911328 -46932528 + B4A SINE B4 1 231 -61 1 1156 585 265 53 0 chr11 74911328 74911479 -46932377 + B3 SINE B2 1 159 -57 1 1156 1281 100 28 0 chr11 74911501 74911681 -46932175 + B2_Mm2 SINE B2 2 186 -9 1 1156 237 384 40 0 chr11 74911775 74911874 -46931982 + PB1 SINE Alu 13 115 -12 1 1156 362 296 119 28 chr11 74911972 74912149 -46931707 + B4A SINE B4 29 221 -71 1 1156 399 41 0 0 chr11 74912384 74912433 -46931423 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 1 1156 695 200 77 0 chr11 74912453 74912583 -46931273 - B1_Mur4 SINE Alu -6 144 5 1 1156 300 27 0 0 chr11 74912784 74912821 -46931035 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1156 465 273 20 47 chr11 74912830 74912980 -46930876 - ID_B1 SINE B4 -1 223 78 1 1156 1173 196 10 0 chr11 74913032 74913241 -46930615 - B3 SINE B2 -2 214 4 1 1156 1216 115 44 0 chr11 74913391 74913574 -46930282 + B2_Mm1t SINE B2 2 192 -1 1 1156 301 194 64 77 chr11 74913577 74913655 -46930201 + ID4_ SINE ID 5 81 -2 1 1156 287 256 140 33 chr11 74913818 74913951 -46929905 + B1F SINE Alu 1 127 -22 1 1156 770 206 14 7 chr11 74914046 74914193 -46929663 + B1_Mus1 SINE Alu 1 148 0 1 1156 395 259 114 105 chr11 74914207 74914416 -46929440 - L1M3 LINE L1 -1302 4838 4601 1 1156 292 298 34 103 chr11 74914416 74914562 -46929294 + B1F1 SINE Alu 1 136 -13 1 1156 395 259 114 105 chr11 74914562 74914667 -46929189 - L1M3 LINE L1 -1540 4600 4521 1 1156 307 233 26 64 chr11 74914729 74914807 -46929049 + ID4 SINE ID 3 77 -6 1 1156 743 174 14 7 chr11 74915170 74915309 -46928547 + B1_Mus2 SINE Alu 7 146 -1 1 1156 577 243 96 0 chr11 74917473 74917609 -46926247 - B1_Mur3 SINE Alu 0 149 1 1 1156 385 285 79 0 chr11 74917610 74917775 -46926081 - L1ME2z LINE L1 -212 6232 6055 1 1156 328 183 100 0 chr11 74917827 74917887 -46925969 + ID4 SINE ID 2 67 -16 1 1156 604 296 79 86 chr11 74917937 74918127 -46925729 + B4A SINE B4 1 205 -87 1 1156 734 237 20 35 chr11 74918127 74918324 -46925532 + B3A SINE B2 2 195 -3 1 1156 604 296 79 86 chr11 74918324 74918348 -46925508 + B4A SINE B4 206 225 -67 1 1156 1442 78 11 0 chr11 74918348 74918539 -46925317 + B2_Mm1t SINE B2 1 193 0 1 1156 681 188 28 28 chr11 74918549 74918691 -46925165 + B1_Mm SINE Alu 1 142 -5 1 1156 604 296 79 86 chr11 74918691 74918756 -46925100 + B4A SINE B4 226 290 -2 1 1156 1235 48 0 0 chr11 74919031 74919178 -46924678 - B1_Mus1 SINE Alu 0 148 2 1 1156 441 246 145 8 chr11 74919181 74919312 -46924544 - B1_Mur2 SINE Alu 0 149 1 1 1156 522 162 0 12 chr11 74919330 74919448 -46924408 - B1_Mur1 SINE Alu 0 149 7 1 1156 286 375 14 20 chr11 74919457 74919604 -46924252 - B1_Mur2 SINE Alu 0 149 4 1 1156 251 317 226 36 chr11 74920134 74920585 -46923271 + L2a LINE L2 2744 3279 -147 1 1156 22 35 0 0 chr11 74920739 74920768 -46923088 + AT_rich Low_complexity Low_complexity 1 29 0 1 1156 787 281 10 5 chr11 74920768 74920972 -46922884 - B3 SINE B2 -4 212 8 1 1156 671 222 0 0 chr11 74921264 74921381 -46922475 - B1_Mur1 SINE Alu -31 118 2 1 1156 299 253 30 59 chr11 74921458 74921559 -46922297 + PB1D10 SINE Alu 13 110 -7 1 1156 1477 43 26 11 chr11 74921698 74921727 -46922129 - B2_Mm1a SINE B2 0 193 161 1 1156 207 0 0 0 chr11 74921727 74921750 -46922106 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1156 1477 43 26 11 chr11 74921750 74921909 -46921947 - B2_Mm1a SINE B2 -33 160 2 1 1156 30 0 0 0 chr11 74922177 74922207 -46921649 + AT_rich Low_complexity Low_complexity 1 30 0 1 1156 268 286 70 103 chr11 74922318 74922474 -46921382 - RSINE1 SINE B4 0 165 15 1 1156 241 272 304 0 chr11 74922582 74922674 -46921182 + B4 SINE B4 96 215 -77 1 1156 499 238 117 14 chr11 74922921 74923066 -46920790 + RSINE1 SINE B4 3 162 -3 1 1156 308 237 161 0 chr11 74923107 74923200 -46920656 + ID_B1 SINE B4 11 118 -106 1 1156 750 130 37 22 chr11 74923272 74923406 -46920450 - MT2A LTR ERVL -395 138 3 1 1156 517 263 144 34 chr11 74924914 74925296 -46918560 - L1ME3 LINE L1 -86 6076 5653 1 1156 970 155 0 13 chr11 74925475 74925625 -46918231 + B1_Mur4 SINE Alu 1 148 -2 1 1156 566 305 63 6 chr11 74925655 74925830 -46918026 + B3A SINE B2 1 185 -13 1 1156 189 74 0 0 chr11 74925890 74925917 -46917939 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1156 1156 34 0 81 chr11 74925917 74926077 -46917779 - B1_Mus2 SINE Alu 0 147 1 1 1156 305 256 109 71 chr11 74926217 74926361 -46917495 - L1ME3 LINE L1 -578 5586 5435 1 1156 757 231 27 16 chr11 74926361 74926546 -46917310 - B3A SINE B2 -10 188 2 1 1156 305 256 109 71 chr11 74926546 74926695 -46917161 - L1ME3 LINE L1 -730 5434 5282 1 1156 615 152 34 0 chr11 74926735 74926853 -46917003 - B1_Mur4 SINE Alu 0 150 29 1 1156 270 250 29 14 chr11 74927241 74927310 -46916546 + ID SINE ID 5 74 -150 1 1156 1229 65 12 12 chr11 74927359 74927531 -46916325 + B2_Mm2 SINE B2 1 172 -23 1 1156 1466 44 50 0 chr11 74927534 74927693 -46916163 + B2_Mm1a SINE B2 2 160 -33 1 1156 545 0 15 0 chr11 74927693 74927758 -46916098 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 1 1156 1466 44 50 0 chr11 74927758 74927779 -46916077 + B2_Mm1a SINE B2 161 190 -3 1 1156 226 88 73 0 chr11 74927793 74927861 -46915995 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1156 368 175 125 0 chr11 74928091 74928171 -46915685 + PB1D10 SINE Alu 27 116 -1 1 1156 357 317 89 7 chr11 74928616 74928762 -46915094 - B4A SINE B4 -130 162 5 1 1156 1054 110 7 0 chr11 74928849 74928994 -46914862 + B1_Mus2 SINE Alu 1 146 -1 1 1156 354 61 0 0 chr11 74929087 74929136 -46914720 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1156 376 302 52 0 chr11 74929577 74929673 -46914183 + PB1D7 SINE Alu 6 106 -14 1 1156 234 342 57 24 chr11 74930386 74930509 -46913347 + L2a LINE L2 3293 3419 -7 1 1156 566 136 52 11 chr11 74930643 74930769 -46913087 - B1_Mur3 SINE Alu -12 135 9 1 1156 329 274 17 42 chr11 74930683 74930801 -46913055 - B4A SINE B4 -112 180 66 1 1156 226 182 18 18 chr11 74931297 74931353 -46912503 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1 1156 189 0 0 0 chr11 74932270 74932291 -46911565 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1156 255 239 45 0 chr11 74932293 74932360 -46911496 + B1F SINE Alu 71 140 -9 1 1156 180 0 0 0 chr11 74933984 74934004 -46909852 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 1 1156 356 200 178 10 chr11 74935326 74935427 -46908429 + L1MA7 LINE L1 5664 5781 -510 1 1156 401 291 17 68 chr11 74935492 74935669 -46908187 + L1MA7 LINE L1 5779 5946 -345 1 1156 392 191 36 0 chr11 74935751 74935835 -46908021 + L1MA7 LINE L1 5951 6037 -254 1 1156 573 53 0 0 chr11 74935995 74936071 -46907785 + B1_Mus2 SINE Alu 2 77 -70 1 1156 303 71 0 0 chr11 74936083 74936125 -46907731 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1156 366 244 50 2 chr11 74936126 74936248 -46907608 + L1MA7 LINE L1 6164 6290 -10 1 1156 696 202 239 17 chr11 74936265 74936441 -46907415 - B3 SINE B2 -1 215 1 1 1156 213 39 0 0 chr11 74936469 74936495 -46907361 + (TATG)n Simple_repeat Simple_repeat 1 26 0 1 1156 828 163 0 0 chr11 74936495 74936624 -46907232 - B3 SINE B2 -87 129 1 1 1156 1749 16 0 0 chr11 74936626 74936819 -46907037 - B2_Mm1a SINE B2 0 193 1 1 1156 776 279 6 5 chr11 74936821 74937038 -46906818 - B3A SINE B2 -3 213 1 1 1156 388 151 27 27 chr11 74937040 74937115 -46906741 - PB1D7 SINE Alu -3 117 43 1 1156 1250 48 0 0 chr11 74937171 74937318 -46906538 - B1_Mus1 SINE Alu 0 148 2 1 1156 1178 61 0 0 chr11 74937499 74937646 -46906210 + B1_Mus2 SINE Alu 1 147 0 1 1156 216 97 0 0 chr11 74937648 74937679 -46906177 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1156 457 308 50 20 chr11 74937689 74937909 -46905947 + B4 SINE B4 2 233 -59 1 1156 469 139 105 0 chr11 74937910 74937996 -46905860 + B3 SINE B2 37 131 -85 1 1156 219 283 0 0 chr11 74938141 74938187 -46905669 + G-rich Low_complexity Low_complexity 4 49 0 1 1156 307 286 43 103 chr11 74938223 74938340 -46905516 + RSINE1 SINE B4 44 153 -12 1 1156 564 231 26 0 chr11 74938589 74938706 -46905150 - PB1D7 SINE Alu 0 120 1 1 1156 216 360 22 11 chr11 74938802 74938892 -46904964 + B4A SINE B4 1 91 -201 1 1156 234 299 77 13 chr11 74938929 74939007 -46904849 + B4A SINE B4 192 274 -18 1 1156 336 48 0 0 chr11 74939012 74939054 -46904802 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1156 236 306 48 0 chr11 74939059 74939121 -46904735 + B4A SINE B4 222 286 -6 1 1156 746 328 36 14 chr11 74939244 74939522 -46904334 + B4A SINE B4 6 289 -3 1 1156 672 205 0 0 chr11 74939574 74939691 -46904165 + B3A SINE B2 8 124 -74 1 1156 467 228 359 6 chr11 74939746 74939905 -46903951 + B3 SINE B2 1 215 -1 1 1156 388 169 182 0 chr11 74939909 74939986 -46903870 + B1_Mur2 SINE Alu 9 99 -50 1 1156 780 274 55 5 chr11 74940047 74940249 -46903607 + B3 SINE B2 1 212 -4 1 1156 376 232 158 0 chr11 74940316 74940398 -46903458 - B1_Mur2 SINE Alu -54 95 1 1 1156 1025 81 52 0 chr11 74940435 74940571 -46903285 - B1_Mus1 SINE Alu -5 143 1 1 1156 1211 54 0 0 chr11 74940739 74940886 -46902970 - B1_Mus2 SINE Alu 0 147 1 1 1156 183 80 0 0 chr11 74941541 74941566 -46902290 + (CATATA)n Simple_repeat Simple_repeat 3 27 0 1 1156 321 307 49 49 chr11 74941760 74941904 -46901952 + ID_B1 SINE B4 81 224 0 1 1156 330 310 40 0 chr11 74942065 74942165 -46901691 + PB1D10 SINE Alu 6 109 -8 1 1156 886 122 14 28 chr11 74942181 74942325 -46901531 + B1_Mur4 SINE Alu 9 150 0 1 1156 606 235 0 22 chr11 74942353 74942492 -46901364 + RSINE1 SINE B4 30 165 0 1 1156 232 191 0 21 chr11 74942495 74942543 -46901313 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1156 589 233 161 22 chr11 74942651 74942831 -46901025 - B3 SINE B2 -8 208 4 1 1156 180 0 0 0 chr11 74942844 74942864 -46900992 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1156 1214 54 0 0 chr11 74942864 74943012 -46900844 - B1_Mus1 SINE Alu 0 148 1 1 1156 398 57 0 0 chr11 74943107 74943160 -46900696 + B1_Mus1 SINE Alu 3 55 -93 1 1156 1057 114 66 6 chr11 74943176 74943343 -46900513 + B2_Mm1t SINE B2 3 179 -14 1 1156 320 127 0 35 chr11 74943384 74943441 -46900415 + B2_Mm2 SINE B2 47 101 -94 1 1156 243 0 0 0 chr11 74943465 74943492 -46900364 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 1156 1520 58 0 26 chr11 74943544 74943738 -46900118 + B2_Mm2 SINE B2 2 190 -5 1 1156 1184 62 0 0 chr11 74943855 74944001 -46899855 + B1_Mus2 SINE Alu 2 147 0 1 1156 257 143 429 0 chr11 74944203 74944294 -46899562 + URR1A DNA MER1_type 1 130 -96 1 1156 331 240 10 77 chr11 74944328 74944432 -46899424 + ID_B1 SINE B4 80 176 -48 1 1156 566 189 9 35 chr11 74944343 74944458 -46899398 + PB1D9 SINE Alu 9 120 0 1 1156 252 315 27 0 chr11 74944751 74944824 -46899032 + PB1D10 SINE Alu 34 108 -9 1 1156 207 200 0 22 chr11 74945332 74945378 -46898478 + MIRm SINE MIR 231 275 -1 1 1156 1468 139 9 30 chr11 74945541 74945771 -46898085 - URR1A DNA MER1_type 0 226 2 1 1156 1146 93 9 149 chr11 74949408 74949623 -46894233 - B2_Mm2 SINE B2 -8 187 3 1 1156 1255 174 24 0 chr11 74951487 74951694 -46892162 + B3 SINE B2 2 213 -3 1 1156 183 330 61 20 chr11 74952146 74952245 -46891611 - MIRm SINE MIR -94 182 80 1 1156 195 42 0 0 chr11 74953412 74953436 -46890420 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 1 1156 519 17 0 0 chr11 74953448 74953508 -46890348 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1156 276 53 0 0 chr11 74953508 74953546 -46890310 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1156 619 318 69 0 chr11 74955216 74955449 -46888407 + MIRb SINE MIR 12 260 -8 1 1156 554 237 59 37 chr11 74957112 74957248 -46886608 - B1_Mur1 SINE Alu -8 141 3 1 1156 260 389 35 21 chr11 74957287 74957429 -46886427 + MIRc SINE MIR 40 183 -85 1 1156 566 206 76 8 chr11 74957877 74958009 -46885847 + ID_B1 SINE B4 84 224 0 1 1156 1421 63 0 39 chr11 74958321 74958483 -46885373 + B2_Mm2 SINE B2 2 161 -34 1 1156 432 0 0 0 chr11 74958483 74958531 -46885325 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1 1156 1421 63 0 39 chr11 74958531 74958550 -46885306 + B2_Mm2 SINE B2 162 176 -19 1 1156 315 290 100 0 chr11 74958650 74958750 -46885106 - MER91C DNA Tip100 -7 133 24 1 1156 261 343 46 0 chr11 74958936 74959044 -46884812 + MIR SINE MIR 67 179 -83 1 1156 304 362 48 68 chr11 74959151 74959462 -46884394 + L2c LINE L2 3023 3327 -60 1 1156 229 213 0 0 chr11 74959575 74959622 -46884234 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1156 826 160 0 46 chr11 74959623 74959774 -46884082 - B1_Mus1 SINE Alu 0 148 5 1 1156 801 230 7 0 chr11 74959840 74959988 -46883868 + B1_Mur2 SINE Alu 1 149 0 1 1156 579 246 99 28 chr11 74960001 74960143 -46883713 + RSINE1 SINE B4 3 154 -11 1 1156 1173 35 0 0 chr11 74960159 74960301 -46883555 + (TAGA)n Simple_repeat Simple_repeat 3 144 0 1 1156 286 274 34 45 chr11 74960359 74960447 -46883409 + B1F SINE Alu 37 123 -26 1 1156 204 40 0 0 chr11 74962328 74962353 -46881503 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1156 955 264 0 5 chr11 74962772 74962970 -46880886 + B3 SINE B2 5 201 -15 1 1156 344 274 12 0 chr11 74963108 74963192 -46880664 + PB1 SINE Alu 21 105 -22 1 1156 536 262 42 7 chr11 74963199 74963341 -46880515 - B1_Mur1 SINE Alu -1 148 2 1 1156 258 305 56 44 chr11 74963417 74963531 -46880325 - B1F SINE Alu -1 119 1 1 1156 301 327 118 0 chr11 74963728 74963838 -46880018 + PB1 SINE Alu 2 124 -3 1 1156 965 167 77 0 chr11 74963872 74964040 -46879816 + B2_Mm2 SINE B2 1 181 -14 1 1156 838 174 7 32 chr11 74964064 74964218 -46879638 + B1_Mur4 SINE Alu 1 150 0 1 1156 692 322 45 19 chr11 74964282 74964551 -46879305 + B4A SINE B4 1 276 -16 1 1156 344 296 0 48 chr11 74964609 74964712 -46879144 - PB1 SINE Alu -16 111 14 1 1156 470 244 192 11 chr11 74964750 74964932 -46878924 + B3 SINE B2 1 215 -1 1 1156 3072 58 0 0 chr11 74965681 74966062 -46877794 - L1Md_F2 LINE L1 -1 6581 6201 1 1156 246 32 0 0 chr11 74967388 74967419 -46876437 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1156 589 163 88 16 chr11 74968598 74968723 -46875133 + B1_Mur2 SINE Alu 1 134 -15 1 1156 393 223 21 31 chr11 74968913 74969010 -46874846 - PB1D9 SINE Alu 0 120 25 1 1156 271 258 91 0 chr11 74969135 74969201 -46874655 + ID_B1 SINE B4 21 92 -132 1 1156 194 336 51 42 chr11 74970736 74970854 -46873002 - L2 LINE L2 -2821 598 480 1 1156 591 102 0 0 chr11 74971800 74971888 -46871968 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1156 195 100 0 0 chr11 74972145 74972175 -46871681 + (CG)n Simple_repeat Simple_repeat 2 31 0 1 1156 261 0 0 0 chr11 74972175 74972203 -46871653 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1156 1015 109 0 14 chr11 74972932 74973071 -46870785 + B1_Mur4 SINE Alu 1 137 -13 1 1157 25 0 0 0 chr11 74979210 74979235 -46864621 + GC_rich Low_complexity Low_complexity 1 25 0 1 1157 23 78 0 0 chr11 74980461 74980512 -46863344 + GC_rich Low_complexity Low_complexity 1 51 0 1 1157 23 0 0 0 chr11 74981593 74981616 -46862240 + GC_rich Low_complexity Low_complexity 1 23 0 1 1157 444 231 26 69 chr11 74982989 74983105 -46860751 + PB1D10 SINE Alu 1 111 -6 1 1157 267 103 0 0 chr11 74984748 74984787 -46859069 + (TCCCC)n Simple_repeat Simple_repeat 3 41 0 1 1157 261 98 0 0 chr11 74986583 74986624 -46857232 + (TCCCG)n Simple_repeat Simple_repeat 4 44 0 1 1157 1177 34 0 39 chr11 74988036 74988189 -46855667 + B1_Mm SINE Alu 1 147 0 1 1157 396 59 0 0 chr11 74988189 74988240 -46855616 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1157 241 265 33 88 chr11 74988603 74988694 -46855162 + MIR SINE MIR 88 173 -89 1 1157 385 222 25 0 chr11 74988720 74988801 -46855055 + ID4_ SINE ID 1 83 0 1 1157 459 252 18 18 chr11 74988803 74988916 -46854940 + PB1D9 SINE Alu 1 113 -7 1 1157 224 61 0 29 chr11 74989805 74989839 -46854017 - B2_Mm2 SINE B2 -153 42 10 1 1157 600 198 71 0 chr11 74989974 74990100 -46853756 - B1_Mus1 SINE Alu -13 135 1 1 1157 565 239 0 9 chr11 74990207 74990321 -46853535 - B3 SINE B2 -96 120 8 1 1157 322 306 163 7 chr11 74990957 74991092 -46852764 + RSINE1 SINE B4 4 159 -6 1 1157 680 111 9 0 chr11 74992839 74992947 -46850909 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 1157 524 235 0 0 chr11 74993520 74993618 -46850238 + B3 SINE B2 1 98 -118 1 1157 1083 175 50 25 chr11 74995192 74995391 -46848465 + B3 SINE B2 2 205 -11 1 1157 521 183 11 0 chr11 74995395 74995488 -46848368 + B1_Mus2 SINE Alu 54 147 0 1 1157 673 233 0 0 chr11 74995658 74995787 -46848069 + B1_Mur2 SINE Alu 1 129 -20 1 1157 433 231 28 9 chr11 74997324 74997433 -46846423 + PB1D7 SINE Alu 2 112 -8 1 1157 305 284 62 0 chr11 75000001 75000082 -46843774 + PB1D10 SINE Alu 17 102 -15 1 1157 736 173 42 60 chr11 75000118 75000284 -46843572 + B2_Mm2 SINE B2 2 164 -31 2 1157 1085 50 0 0 chr11 75000306 75000447 -46843409 - B1_Mus2 SINE Alu -1 146 6 3 1157 424 202 0 0 chr11 75000484 75000568 -46843288 + B1_Mur1 SINE Alu 66 149 0 4 1157 189 107 0 0 chr11 75000568 75000596 -46843260 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1157 394 161 0 0 chr11 75000633 75000695 -46843161 + B4A SINE B4 27 88 -204 6 1157 216 255 463 0 chr11 75000711 75000838 -46843018 + B3A SINE B2 3 188 -10 7 1157 1253 41 0 0 chr11 75000848 75000995 -46842861 + B1_Mus2 SINE Alu 1 147 0 8 1157 243 0 0 0 chr11 75000995 75001022 -46842834 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1157 354 248 176 74 chr11 75001045 75001193 -46842663 + RSINE1 SINE B4 3 165 0 1 1157 587 157 216 32 chr11 75001253 75001378 -46842478 - B1_Mur1 SINE Alu -1 148 1 1 1157 1073 57 50 0 chr11 75001392 75001532 -46842324 - B1_Mus1 SINE Alu 0 148 2 1 1157 358 241 46 0 chr11 75001545 75001575 -46842281 + B4A SINE B4 202 235 -57 6 1157 1647 47 0 0 chr11 75001575 75001766 -46842090 + B2_Mm1t SINE B2 1 191 -2 1 1157 358 241 46 0 chr11 75001766 75001822 -46842034 + B4A SINE B4 236 291 -1 6 1157 200 195 0 0 chr11 75001823 75001864 -46841992 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1157 263 150 0 0 chr11 75001926 75001966 -46841890 + ID4_ SINE ID 30 69 -14 1 1157 386 196 0 10 chr11 75001967 75002065 -46841791 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 1157 497 288 99 12 chr11 75002146 75002318 -46841538 + B3A SINE B2 6 192 -6 1 1157 296 294 130 38 chr11 75002476 75002607 -46841249 + RSINE1 SINE B4 2 144 -21 1 1157 204 40 0 0 chr11 75002643 75002668 -46841188 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1157 793 211 20 0 chr11 75002688 75002835 -46841021 + B1_Mur4 SINE Alu 1 150 0 2 1157 1171 75 0 0 chr11 75002885 75003032 -46840824 + B1_Mus1 SINE Alu 2 148 0 2 1157 224 265 14 81 chr11 75005733 75005807 -46838049 + MIRb SINE MIR 65 133 -135 2 1157 205 216 308 8 chr11 75006256 75006373 -46837483 + L2a LINE L2 3213 3364 -62 2 1157 231 171 26 13 chr11 75007234 75007311 -46836545 + GA-rich Low_complexity Low_complexity 1 78 0 2 1157 692 185 131 0 chr11 75011709 75011839 -46832017 - B1_Mur2 SINE Alu 0 149 3 2 1157 401 245 11 11 chr11 75012605 75012700 -46831156 + PB1D10 SINE Alu 1 95 -22 2 1157 335 78 0 19 chr11 75012700 75012752 -46831104 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1157 351 0 0 0 chr11 75012752 75012790 -46831066 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1157 264 241 14 56 chr11 75012793 75012888 -46830968 + ID4 SINE ID 10 98 -54 2 1157 806 238 15 31 chr11 75013228 75013423 -46830433 + B3A SINE B2 7 198 0 3 1157 369 0 0 0 chr11 75014393 75014434 -46829422 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1157 306 350 76 0 chr11 75015543 75015700 -46828156 + MIR3 SINE MIR 14 182 -26 3 1157 420 20 0 0 chr11 75016462 75016511 -46827345 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1157 257 191 15 31 chr11 75016778 75016843 -46827013 - L1MA4A LINE L1 0 6303 6240 3 1157 710 333 55 38 chr11 75017415 75017780 -46826076 - LTR16C LTR ERVL -11 478 108 3 1157 500 290 27 27 chr11 75018792 75018941 -46824915 - B1F SINE Alu 0 149 1 3 1157 387 346 82 54 chr11 75018970 75019324 -46824532 - L2a LINE L2 -48 3378 3015 3 1157 207 0 0 0 chr11 75020308 75020331 -46823525 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1157 1452 74 21 0 chr11 75020550 75020739 -46823117 - B2_Mm1a SINE B2 0 193 1 3 1157 272 269 162 9 chr11 75020747 75020852 -46823004 - PB1 SINE Alu -2 125 5 4 1157 724 222 0 0 chr11 75020870 75021005 -46822851 - B1_Mur1 SINE Alu -13 136 2 4 1157 231 61 0 0 chr11 75021025 75021058 -46822798 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 4 1157 1140 59 0 0 chr11 75021058 75021193 -46822663 - B1_Mus1 SINE Alu -13 135 1 4 1157 219 140 0 0 chr11 75021196 75021246 -46822610 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1157 309 26 0 0 chr11 75021472 75021510 -46822346 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1157 360 0 0 0 chr11 75021511 75021551 -46822305 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1157 264 352 0 71 chr11 75021781 75021894 -46821962 - YREP_Mm Unknown Unknown -1504 308 204 4 1157 490 226 20 0 chr11 75021796 75021898 -46821958 + ID_B1 SINE B4 97 200 -24 4 1157 210 243 113 14 chr11 75021938 75022009 -46821847 - MIRc SINE MIR -107 161 84 4 1157 598 244 167 11 chr11 75022029 75022215 -46821641 + B3 SINE B2 2 216 0 5 1157 372 322 37 56 chr11 75022473 75022634 -46821222 + MIRb SINE MIR 95 252 -16 5 1157 357 272 22 0 chr11 75023269 75023361 -46820495 + ID_B1 SINE B4 126 219 -5 5 1157 257 258 50 30 chr11 75023272 75023372 -46820484 + B1F SINE Alu 48 149 0 5 1157 228 135 0 0 chr11 75024108 75024145 -46819711 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1157 244 282 208 8 chr11 75024690 75024815 -46819041 + MIR SINE MIR 113 262 0 5 1157 578 262 27 20 chr11 75025011 75025159 -46818697 - B1_Mur1 SINE Alu 0 149 1 5 1157 334 198 164 29 chr11 75025192 75025296 -46818560 - ID_B1 SINE B4 0 224 107 5 1157 730 171 38 40 chr11 75025292 75025475 -46818381 - B3 SINE B2 -6 210 21 5 1157 396 0 0 0 chr11 75026090 75026134 -46817722 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1157 229 234 21 0 chr11 75026385 75026432 -46817424 - PB1D7 SINE Alu -58 62 15 6 1157 387 0 0 0 chr11 75026487 75026530 -46817326 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1157 920 81 27 0 chr11 75026712 75026860 -46816996 + (GA)n Simple_repeat Simple_repeat 2 153 0 6 1157 380 316 146 23 chr11 75028212 75028555 -46815301 - L2 LINE L2 -343 3076 2692 6 1157 389 286 12 72 chr11 75030177 75030343 -46813513 - RSINE1 SINE B4 0 165 10 6 1157 451 275 161 47 chr11 75030381 75030599 -46813257 + MTEa LTR MaLR 1 243 -136 6 1157 228 297 58 66 chr11 75030640 75030777 -46813079 - B1_Mur4 SINE Alu -2 148 13 6 1157 433 231 182 0 chr11 75030667 75030788 -46813068 - ID_B1 SINE B4 0 224 82 6 1157 585 0 0 0 chr11 75030860 75030925 -46812931 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 6 1157 284 254 16 0 chr11 75031107 75031170 -46812686 + PB1 SINE Alu 41 104 -23 6 1157 314 273 6 0 chr11 75031511 75031556 -46812300 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1157 997 138 14 0 chr11 75031556 75031701 -46812155 - B1_Mur3 SINE Alu -2 147 1 7 1157 314 264 4 0 chr11 75031701 75031891 -46811965 + (TG)n Simple_repeat Simple_repeat 1 190 0 7 1157 311 26 0 0 chr11 75031895 75031934 -46811922 - HAL1-3A_ME LINE L1 -848 2010 1972 7 1157 309 230 22 54 chr11 75032043 75032135 -46811721 - MARNA DNA Mariner -222 364 276 7 1157 483 296 61 12 chr11 75032406 75032591 -46811265 - MIRb SINE MIR -43 219 37 7 1157 987 37 0 43 chr11 75032704 75032844 -46811012 - B1_Mm SINE Alu -5 142 9 7 1157 476 209 34 173 chr11 75032844 75032881 -46810975 - B4 SINE B4 -69 221 70 7 1157 220 269 14 56 chr11 75034414 75034485 -46809371 + MamSINE1 SINE tRNA 14 81 -209 7 1157 213 94 0 0 chr11 75034594 75034626 -46809230 + (G)n Simple_repeat Simple_repeat 1 32 0 7 1157 214 321 0 12 chr11 75034668 75034838 -46809018 + (CAGA)n Simple_repeat Simple_repeat 2 169 0 8 1157 322 262 25 0 chr11 75034891 75034971 -46808885 + PB1D7 SINE Alu 30 111 -9 8 1157 258 266 105 11 chr11 75034971 75034986 -46808870 + B4A SINE B4 115 218 -74 8 1157 264 111 0 0 chr11 75035218 75035263 -46808593 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 8 1157 335 336 41 8 chr11 75035273 75035396 -46808460 - RSINE1 SINE B4 -36 129 3 8 1157 1473 83 10 0 chr11 75035414 75035606 -46808250 - B2_Mm2 SINE B2 0 195 2 8 1157 216 0 0 0 chr11 75035609 75035633 -46808223 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1157 1107 58 0 7 chr11 75035633 75035771 -46808085 - B1_Mus2 SINE Alu -10 137 1 8 1157 1576 52 5 0 chr11 75035785 75035976 -46807880 - B2_Mm1t SINE B2 0 193 2 8 1157 573 290 50 61 chr11 75035980 75036178 -46807678 - B3A SINE B2 0 198 3 8 1157 425 200 11 0 chr11 75036215 75036305 -46807551 - ID_B1 SINE B4 0 224 134 9 1157 234 333 23 86 chr11 75036305 75036343 -46807513 - B1_Mur1 SINE Alu -1 148 29 9 1157 293 318 24 113 chr11 75036395 75036519 -46807337 + B1F SINE Alu 32 144 -5 9 1157 733 241 63 0 chr11 75036513 75036671 -46807185 + B3 SINE B2 8 175 -41 9 1157 244 62 0 0 chr11 75036710 75036742 -46807114 + B3A SINE B2 5 36 -162 9 1157 764 211 0 0 chr11 75036740 75036882 -46806974 - B1_Mm SINE Alu 0 147 6 9 1157 880 200 6 33 chr11 75036887 75037068 -46806788 + B3 SINE B2 34 209 -7 9 1157 239 316 19 87 chr11 75037063 75037081 -46806775 + MT2B LTR ERVL 145 155 -446 9 1157 580 237 0 17 chr11 75037081 75037189 -46806667 + PB1D9 SINE Alu 1 108 -12 9 1157 1219 26 0 13 chr11 75037189 75037346 -46806510 + (GGAA)n Simple_repeat Simple_repeat 4 158 0 9 1157 580 237 0 17 chr11 75037346 75037357 -46806499 + PB1D9 SINE Alu 109 118 -2 9 1157 228 244 56 79 chr11 75037629 75037718 -46806138 + L3 LINE CR1 3852 3938 -551 1 1157 256 325 108 33 chr11 75037794 75038007 -46805849 + L2 LINE L2 2647 2875 -544 1 1157 520 270 32 0 chr11 75038083 75038209 -46805647 - RSINE1 SINE B4 -16 149 20 1 1157 776 177 62 72 chr11 75038225 75038404 -46805452 + B2_Mm2 SINE B2 2 183 -12 1 1157 834 177 7 45 chr11 75038404 75038558 -46805298 + B1_Mus1 SINE Alu 1 148 0 1 1157 1147 88 0 0 chr11 75038561 75038708 -46805148 + B1_Mus2 SINE Alu 1 147 0 1 1157 776 177 62 72 chr11 75038708 75038719 -46805137 + B2_Mm2 SINE B2 184 194 -1 1 1157 210 345 11 0 chr11 75038983 75039070 -46804786 - L2b LINE L2 0 3375 3288 1 1157 815 234 108 10 chr11 75039249 75039443 -46804413 + B3 SINE B2 1 213 -3 1 1157 624 259 0 0 chr11 75039465 75039600 -46804256 + B1_Mur2 SINE Alu 2 136 -13 1 1157 394 270 87 0 chr11 75039776 75039891 -46803965 + B4A SINE B4 168 292 0 1 1157 1069 96 7 7 chr11 75040163 75040310 -46803546 - B1_Mm SINE Alu 0 147 1 1 1157 315 0 0 0 chr11 75040313 75040348 -46803508 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1157 726 154 37 37 chr11 75040364 75040499 -46803357 + B1_Mur2 SINE Alu 3 137 -12 1 1157 270 73 0 0 chr11 75040499 75040540 -46803316 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1157 423 0 0 0 chr11 75040540 75040587 -46803269 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1157 574 188 10 0 chr11 75040884 75040985 -46802871 + RSINE1 SINE B4 1 102 -63 1 1157 219 173 0 0 chr11 75041041 75041093 -46802763 + (ATGGTG)n Simple_repeat Simple_repeat 5 56 0 1 1157 193 291 114 0 chr11 75041318 75041397 -46802459 + MIRm SINE MIR 8 95 -181 1 1157 973 254 162 38 chr11 75041400 75041800 -46802056 - MLT1C LTR MaLR -2 465 16 1 1157 571 194 121 0 chr11 75041878 75042002 -46801854 + ID_B1 SINE B4 80 218 -6 1 1157 575 225 25 0 chr11 75042010 75042130 -46801726 + RSINE1 SINE B4 2 124 -41 1 1157 298 185 12 12 chr11 75042195 75042277 -46801579 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1157 830 309 51 7 chr11 75042283 75042557 -46801299 - B4A SINE B4 -6 286 1 1 1157 313 280 29 29 chr11 75042562 75042665 -46801191 + MIR SINE MIR 159 261 -1 1 1157 543 277 30 8 chr11 75044124 75044255 -46799601 + ID_B1 SINE B4 83 216 -8 1 1157 225 174 0 0 chr11 75044257 75044303 -46799553 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1157 474 244 0 171 chr11 75044317 75044387 -46799469 + B1_Mur1 SINE Alu 19 78 -71 1 1157 1210 34 7 7 chr11 75044387 75044533 -46799323 + B1_Mus2 SINE Alu 1 146 -1 1 1157 474 244 0 171 chr11 75044533 75044620 -46799236 + B1_Mur1 SINE Alu 79 149 0 1 1157 528 16 0 0 chr11 75044979 75045040 -46798816 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1157 728 245 70 101 chr11 75046249 75046331 -46797525 - ID_B1 SINE B4 -2 222 158 1 1157 1245 162 27 45 chr11 75046331 75046551 -46797305 - B3 SINE B2 0 216 1 1 1157 728 245 70 101 chr11 75046551 75046695 -46797161 - ID_B1 SINE B4 -67 157 3 1 1157 484 258 0 24 chr11 75046705 75046828 -46797028 - PB1D7 SINE Alu 0 120 1 1 1157 194 176 0 19 chr11 75046836 75046888 -46796968 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1157 366 250 0 0 chr11 75046894 75046966 -46796890 - RSINE1 SINE B4 -86 79 8 1 1157 381 177 146 0 chr11 75046979 75047075 -46796781 - ID_B1 SINE B4 -5 219 110 1 1157 480 260 31 11 chr11 75047106 75047292 -46796564 - B3 SINE B2 -2 193 1 1 1157 571 248 50 44 chr11 75047292 75047406 -46796450 - ID_B1 SINE B4 -107 117 3 1 1157 338 263 90 10 chr11 75047409 75047509 -46796347 - PB1D10 SINE Alu -9 108 1 1 1157 482 346 78 18 chr11 75047734 75047952 -46795904 - MIRb SINE MIR -10 258 28 1 1157 802 236 32 44 chr11 75049013 75049261 -46794595 - MER113 DNA MER1_type -4 517 273 1 1157 351 315 134 65 chr11 75049300 75049531 -46794325 - MIRb SINE MIR 0 268 22 1 1157 224 377 28 9 chr11 75049695 75049802 -46794054 - MIRm SINE MIR -122 154 46 1 1157 375 23 0 0 chr11 75050426 75050470 -46793386 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1157 516 298 77 26 chr11 75051002 75051268 -46792588 - MTEa LTR MaLR 0 379 80 1 1157 911 129 0 0 chr11 75051269 75051409 -46792447 + B1_Mus1 SINE Alu 6 145 -3 1 1157 180 0 0 0 chr11 75051409 75051429 -46792427 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1157 615 205 31 8 chr11 75051439 75051567 -46792289 - B1F1 SINE Alu -18 131 1 1 1157 1034 195 39 20 chr11 75051927 75052131 -46791725 + B3 SINE B2 3 210 -6 1 1157 302 254 0 0 chr11 75052642 75052697 -46791159 - B1F SINE Alu -94 55 1 1 1157 819 206 0 0 chr11 75052717 75052863 -46790993 - B1_Mur1 SINE Alu -1 148 3 1 1157 242 182 0 0 chr11 75052864 75052908 -46790948 - B3A SINE B2 -153 45 2 1 1157 772 200 7 0 chr11 75052936 75053071 -46790785 - B1_Mus2 SINE Alu -4 143 8 1 1157 402 239 33 0 chr11 75053237 75053329 -46790527 - PB1D9 SINE Alu -23 97 3 1 1157 254 247 10 101 chr11 75053247 75053346 -46790510 - MT2B LTR ERVL -359 242 153 1 1157 1210 55 0 0 chr11 75053380 75053526 -46790330 + B1_Mus2 SINE Alu 2 147 0 1 1157 957 86 7 14 chr11 75053552 75053693 -46790163 + B2_Mm2 SINE B2 2 141 -54 1 1157 441 0 0 0 chr11 75053704 75053753 -46790103 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1 1157 228 271 0 41 chr11 75053923 75053996 -46789860 + Charlie4 DNA MER1_type 1891 1960 -1 1 1157 334 276 50 10 chr11 75054393 75054492 -46789364 - PB1D10 SINE Alu -7 110 8 1 1157 225 0 0 0 chr11 75054517 75054542 -46789314 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1157 775 327 8 35 chr11 75054571 75054828 -46789028 - B4A SINE B4 -6 286 37 1 1157 402 290 9 0 chr11 75054834 75054941 -46788915 - PB1D10 SINE Alu -6 111 4 1 1157 1117 22 37 0 chr11 75055023 75055159 -46788697 + B1_Mus2 SINE Alu 1 141 -6 1 1157 263 26 0 49 chr11 75055161 75055202 -46788654 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1157 641 100 0 0 chr11 75055202 75055292 -46788564 + B2_Mm2 SINE B2 75 164 -31 1 1157 793 192 0 40 chr11 75055286 75055438 -46788418 + ID_B1 SINE B4 77 222 -2 1 1157 549 181 0 0 chr11 75055451 75055545 -46788311 + B1_Mm SINE Alu 54 147 0 1 1157 335 161 110 70 chr11 75055811 75055911 -46787945 - MLT1A1 LTR MaLR 0 408 305 1 1157 226 263 116 85 chr11 75056086 75056215 -46787641 - MLT1A1 LTR MaLR -224 141 9 1 1157 856 284 190 23 chr11 75056254 75056733 -46787123 - MER89 LTR ERV1 0 559 1 1 1157 971 95 65 7 chr11 75056862 75057000 -46786856 + B1_Mus2 SINE Alu 1 146 -1 1 1157 1869 138 46 13 chr11 75059657 75060046 -46783810 + RMER17C LTR ERVK 1 402 -8 1 1157 236 275 29 0 chr11 75060207 75060276 -46783580 - ID4 SINE ID -11 72 2 1 1157 844 145 7 0 chr11 75060395 75060533 -46783323 - B1_Mur4 SINE Alu 0 150 12 1 1157 1137 75 0 7 chr11 75060568 75060715 -46783141 - B1_Mm SINE Alu -1 146 1 1 1157 1152 100 15 109 chr11 75061288 75061490 -46782366 + B2_Mm2 SINE B2 2 184 -11 1 1157 273 132 74 19 chr11 75061491 75061545 -46782311 - B1_Mus1 SINE Alu -91 57 1 1 1157 23 54 0 0 chr11 75061545 75061582 -46782274 + AT_rich Low_complexity Low_complexity 1 37 0 1 1157 576 204 9 0 chr11 75061596 75061704 -46782152 + B3 SINE B2 1 109 -107 1 1157 885 144 7 46 chr11 75061826 75061838 -46782018 - B1_Mus1 SINE Alu -1 147 138 1 1157 186 43 0 0 chr11 75061838 75061861 -46781995 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1157 885 144 7 46 chr11 75061861 75062001 -46781855 - B1_Mus1 SINE Alu -11 137 1 1 1157 243 327 0 0 chr11 75062039 75062094 -46781762 + MER115 DNA Tip100 158 212 -481 1 1157 196 341 0 47 chr11 75063308 75063394 -46780462 - L2b LINE L2 -211 3164 3083 1 1157 952 237 23 19 chr11 75063436 75063694 -46780162 + L1MB5 LINE L1 5887 6145 -29 1 1157 210 162 0 0 chr11 75063901 75063938 -46779918 + T-rich Low_complexity Low_complexity 3 39 0 1 1157 222 273 45 15 chr11 75064576 75064643 -46779213 + PB1D10 SINE Alu 48 116 -1 1 1157 1130 62 0 27 chr11 75066213 75066226 -46777630 - B1_Mus1 SINE Alu 0 148 139 1 1157 261 0 0 0 chr11 75066226 75066255 -46777601 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1157 1130 62 0 27 chr11 75066255 75066391 -46777465 - B1_Mus1 SINE Alu -10 138 3 1 1157 253 254 16 0 chr11 75066396 75066459 -46777397 - ID_B1 SINE B4 -3 221 158 1 1157 229 200 298 48 chr11 75066459 75066478 -46777378 - PB1D10 SINE Alu -3 112 10 1 1157 914 144 13 27 chr11 75066526 75066676 -46777180 - B1_Mus1 SINE Alu 0 148 1 1 1157 1036 183 71 5 chr11 75066687 75066885 -46776971 - B3 SINE B2 -4 212 2 1 1157 391 200 133 37 chr11 75066914 75067049 -46776807 - B1F2 SINE Alu 0 149 2 1 1157 1599 42 0 25 chr11 75067113 75067310 -46776546 - B2_Mm1a SINE B2 -1 192 1 1 1157 31 26 0 0 chr11 75067557 75067595 -46776261 + AT_rich Low_complexity Low_complexity 1 38 0 1 1157 1171 228 26 36 chr11 75068616 75068921 -46774935 + L1MA5 LINE L1 5999 6300 0 1 1157 243 0 0 0 chr11 75069204 75069231 -46774625 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1157 739 129 0 82 chr11 75069327 75069462 -46774394 - B1_Mur4 SINE Alu -12 138 15 1 1157 1998 36 12 60 chr11 75069462 75069739 -46774117 + L1Md_F3 LINE L1 6332 6584 0 1 1157 283 195 94 94 chr11 75070410 75070495 -46773361 + ID_B1 SINE B4 86 170 -54 1 1157 234 250 125 77 chr11 75070495 75070511 -46773345 + PB1D10 SINE Alu 5 110 -7 1 1157 615 62 0 0 chr11 75070511 75070591 -46773265 + (GGA)n Simple_repeat Simple_repeat 2 81 0 1 1157 309 150 0 135 chr11 75071518 75071718 -46772138 + (CTGGGG)n Simple_repeat Simple_repeat 2 174 0 2 1157 523 112 0 127 chr11 75071729 75071934 -46771922 + (CTGGGG)n Simple_repeat Simple_repeat 1 179 0 2 1157 342 0 0 0 chr11 75072221 75072259 -46771597 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1157 837 191 0 0 chr11 75072313 75072444 -46771412 - B1_Mur3 SINE Alu -18 131 1 2 1157 309 306 35 0 chr11 75072501 75072586 -46771270 + MER81 DNA AcHobo 1 88 -26 2 1157 262 300 28 57 chr11 75072738 75072844 -46771012 - MIR SINE MIR 0 262 160 2 1157 252 320 226 11 chr11 75073033 75073632 -46770224 - L2a LINE L2 -321 3105 2355 2 1157 238 184 311 0 chr11 75073643 75073746 -46770110 - MIRb SINE MIR -116 152 18 2 1157 205 188 21 0 chr11 75074597 75074645 -46769211 + L2b LINE L2 3015 3063 -312 2 1157 184 286 0 0 chr11 75076205 75076254 -46767602 + MIRc SINE MIR 215 263 -5 2 1157 243 146 0 0 chr11 75079635 75079676 -46764180 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 2 1157 192 40 0 0 chr11 75080303 75080328 -46763528 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1157 423 0 0 0 chr11 75081455 75081502 -46762354 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1157 21 0 0 0 chr11 75082013 75082034 -46761822 + AT_rich Low_complexity Low_complexity 1 21 0 2 1157 225 94 0 0 chr11 75082482 75082514 -46761342 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 2 1157 367 186 233 0 chr11 75082514 75082600 -46761256 - ID_B1 SINE B4 0 224 119 2 1157 546 16 0 0 chr11 75082642 75082705 -46761151 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1157 551 284 144 25 chr11 75082705 75082896 -46760960 + B4A SINE B4 17 231 -61 2 1157 366 282 36 55 chr11 75082896 75083061 -46760795 + RSINE1 SINE B4 4 165 0 2 1157 260 161 196 0 chr11 75083088 75083144 -46760712 + B4A SINE B4 218 284 -8 2 1157 958 144 211 11 chr11 75083329 75083504 -46760352 - B3 SINE B2 -6 210 1 2 1157 1191 192 9 18 chr11 75083665 75083888 -46759968 - ID_B1 SINE B4 -2 222 2 2 1157 512 289 26 13 chr11 75085235 75085386 -46758470 - RSINE1 SINE B4 -11 154 2 2 1157 246 32 0 0 chr11 75085398 75085429 -46758427 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1157 345 308 9 80 chr11 75085446 75085559 -46758297 - PB1D10 SINE Alu -12 105 1 2 1157 356 238 70 114 chr11 75085582 75085696 -46758160 - PB1D10 SINE Alu 0 117 9 2 1157 432 85 0 12 chr11 75085767 75085880 -46757976 - B2_Mm2 SINE B2 0 195 48 2 1157 1241 99 17 0 chr11 75085906 75086078 -46757778 - B2_Mm1t SINE B2 -18 175 1 2 1157 23 33 0 0 chr11 75086082 75086112 -46757744 + AT_rich Low_complexity Low_complexity 1 30 0 2 1157 592 217 0 25 chr11 75086151 75086269 -46757587 - PB1D10 SINE Alu -2 115 1 2 1157 210 250 0 0 chr11 75086753 75086809 -46757047 + CT-rich Low_complexity Low_complexity 2 57 0 2 1157 200 188 0 0 chr11 75086908 75086940 -46756916 + polypurine Low_complexity Low_complexity 3 34 0 2 1157 1624 11 43 0 chr11 75087574 75087759 -46756097 + B2_Mm1a SINE B2 1 193 0 2 1157 189 94 0 0 chr11 75087976 75088008 -46755848 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1157 518 257 71 7 chr11 75089675 75089816 -46754040 - RSINE1 SINE B4 -4 161 12 2 1157 705 269 0 0 chr11 75089959 75090108 -46753748 + B1F SINE Alu 1 149 0 2 1157 201 259 0 18 chr11 75090108 75090163 -46753693 + GA-rich Low_complexity Low_complexity 4 57 0 2 1157 340 315 11 11 chr11 75090247 75090340 -46753516 + B4 SINE B4 1 93 -199 2 1157 443 331 93 0 chr11 75090351 75090490 -46753366 + RSINE1 SINE B4 12 163 -2 2 1157 500 0 17 0 chr11 75090499 75090559 -46753297 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 2 1157 622 184 46 0 chr11 75090566 75090675 -46753181 + PB1D9 SINE Alu 2 115 -5 2 1157 198 71 0 0 chr11 75090675 75090703 -46753153 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1157 212 158 0 0 chr11 75090782 75090820 -46753036 + T-rich Low_complexity Low_complexity 1 38 0 2 1157 1171 69 0 0 chr11 75090820 75090965 -46752891 - B1_Mus1 SINE Alu -1 147 3 2 1157 441 185 12 0 chr11 75090966 75091047 -46752809 + B1_Mus1 SINE Alu 15 96 -52 2 1157 195 42 0 0 chr11 75091051 75091075 -46752781 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 2 1157 818 234 23 47 chr11 75091080 75091295 -46752561 + B4A SINE B4 83 292 0 2 1157 318 205 0 0 chr11 75091310 75091393 -46752463 + (CATA)n Simple_repeat Simple_repeat 4 86 0 2 1157 792 196 0 0 chr11 75091378 75091557 -46752299 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1157 224 136 0 33 chr11 75091560 75091621 -46752235 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 2 1157 292 293 13 114 chr11 75091950 75092108 -46751748 + Charlie18a DNA MER1_type 89 230 -112 2 1157 210 37 0 0 chr11 75092116 75092143 -46751713 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 1157 261 83 0 0 chr11 75092144 75092180 -46751676 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1157 203 88 0 29 chr11 75095661 75095696 -46748160 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 2 1157 289 254 79 71 chr11 75096895 75097022 -46746834 - MLT1D LTR MaLR 0 467 340 2 1157 278 229 82 0 chr11 75097069 75097130 -46746726 + RMER30 DNA MER1_type 133 198 -4 2 1157 539 274 0 17 chr11 75097151 75097270 -46746586 + B3A SINE B2 2 118 -80 2 1157 612 101 0 0 chr11 75097280 75097369 -46746487 + (CATA)n Simple_repeat Simple_repeat 2 90 0 2 1157 1322 86 43 11 chr11 75097388 75097576 -46746280 + B2_Mm2 SINE B2 2 195 0 2 1157 388 112 0 73 chr11 75097576 75097672 -46746184 + GA-rich Low_complexity Low_complexity 4 92 0 2 1157 358 273 122 64 chr11 75097887 75098075 -46745781 - MLT1D LTR MaLR -304 201 3 2 1157 292 341 77 47 chr11 75098446 75098473 -46745383 - B4 SINE B4 -49 243 219 2 1157 210 37 0 0 chr11 75098473 75098500 -46745356 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1157 849 266 18 17 chr11 75098500 75098706 -46745150 - ID_B1 SINE B4 -74 218 3 2 1157 1307 129 0 10 chr11 75098710 75098906 -46744950 - B2_Mm2 SINE B2 0 195 2 2 1157 492 267 19 0 chr11 75098906 75099011 -46744845 - PB1D10 SINE Alu -10 107 1 2 1157 874 54 23 23 chr11 75099021 75099153 -46744703 + (TTCCC)n Simple_repeat Simple_repeat 5 136 0 2 1157 503 162 40 0 chr11 75099172 75099271 -46744585 - B1_Mur3 SINE Alu 0 149 47 2 1157 307 295 103 21 chr11 75099310 75099407 -46744449 + PB1D10 SINE Alu 1 105 -12 2 1157 198 0 0 0 chr11 75099435 75099457 -46744399 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1157 193 372 10 41 chr11 75099457 75099555 -46744301 - L3 LINE CR1 -162 4327 4233 2 1157 628 234 69 0 chr11 75100415 75100560 -46743296 + ID_B1 SINE B4 3 157 -67 2 1157 816 173 0 0 chr11 75100568 75100707 -46743149 + B1_Mus1 SINE Alu 10 148 0 2 1157 366 312 230 57 chr11 75100780 75100862 -46742994 - Tigger7 DNA MER2_type -46 2445 2364 2 1157 631 267 15 0 chr11 75100862 75100997 -46742859 + B1_Mur3 SINE Alu 1 137 -12 2 1157 207 69 0 0 chr11 75100999 75101028 -46742828 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 2 1157 999 241 30 0 chr11 75101029 75101228 -46742628 + B3 SINE B2 2 206 -10 2 1157 366 312 230 57 chr11 75101228 75101436 -46742420 - Tigger7 DNA MER2_type -128 2363 2099 2 1157 242 368 24 8 chr11 75101414 75101540 -46742316 + Tigger7 DNA MER2_type 124 251 -2240 2 1157 454 257 83 37 chr11 75101513 75101697 -46742159 - MER44D DNA MER2_type -2302 189 1 2 1157 575 266 88 65 chr11 75101951 75102168 -46741688 + ID_B1 SINE B4 3 224 0 2 1157 512 265 103 52 chr11 75102173 75102328 -46741528 + RSINE1 SINE B4 2 164 -1 2 1157 221 295 16 16 chr11 75102979 75103041 -46740815 + ID4_ SINE ID 11 72 -11 2 1157 1144 210 14 14 chr11 75103108 75103316 -46740540 + B3 SINE B2 1 208 -8 2 1157 501 212 35 26 chr11 75103333 75103449 -46740407 + PB1D9 SINE Alu 4 120 0 2 1158 216 0 0 0 chr11 75105003 75105027 -46738829 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1158 261 0 0 0 chr11 75109268 75109297 -46734559 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1158 1134 75 0 40 chr11 75109297 75109449 -46734407 - B1_Mm SINE Alu 0 147 2 2 1158 291 217 0 89 chr11 75109577 75109678 -46734178 + PB1D10 SINE Alu 18 109 -8 2 1158 227 308 51 0 chr11 75110275 75110353 -46733503 - ID4_ SINE ID -1 82 1 2 1158 698 260 195 23 chr11 75110372 75110675 -46733181 + ORR1E LTR MaLR 1 355 -4 2 1158 180 0 0 0 chr11 75110729 75110749 -46733107 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 2 1158 327 346 10 0 chr11 75110819 75110923 -46732933 - PB1D10 SINE Alu -3 114 10 2 1158 357 138 112 101 chr11 75111130 75111219 -46732637 - URR1B DNA MER1_type 0 225 136 2 1158 302 305 73 37 chr11 75112547 75112683 -46731173 + ID_B1 SINE B4 84 224 0 2 1158 228 340 37 9 chr11 75112685 75112792 -46731064 + PB1D10 SINE Alu 1 110 -7 2 1158 403 200 186 69 chr11 75112844 75112989 -46730867 + MTEa LTR MaLR 22 183 -196 2 1158 559 294 54 11 chr11 75113133 75113319 -46730537 + MTEa LTR MaLR 186 379 0 2 1158 258 304 114 40 chr11 75115590 75115765 -46728091 + MIR SINE MIR 15 202 -60 2 1158 190 200 0 70 chr11 75115819 75115862 -46727994 - MER5B DNA MER1_type -105 73 34 2 1158 430 340 71 28 chr11 75116444 75116656 -46727200 - MER2 DNA MER2_type -30 315 95 2 1158 614 104 10 0 chr11 75116863 75116959 -46726897 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1158 404 225 249 23 chr11 75117118 75117291 -46726565 + B3 SINE B2 1 212 -4 2 1158 295 202 206 29 chr11 75117300 75117402 -46726454 + PB1D9 SINE Alu 1 120 0 2 1158 1455 39 45 0 chr11 75117411 75117590 -46726266 + B2_Mm1a SINE B2 1 187 -6 2 1158 399 262 90 0 chr11 75117648 75117770 -46726086 + B1F SINE Alu 1 133 -16 2 1158 180 0 0 0 chr11 75117774 75117794 -46726062 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1158 691 55 0 32 chr11 75117890 75117984 -46725872 - B1_Mur4 SINE Alu 0 150 60 3 1158 507 224 24 84 chr11 75118859 75119025 -46724831 - RSINE1 SINE B4 -8 157 2 3 1158 249 246 101 95 chr11 75119032 75119180 -46724676 + YREP_Mm Unknown Unknown 159 307 -1505 3 1158 583 248 30 0 chr11 75119049 75119182 -46724674 - B1F SINE Alu -3 146 10 3 1158 795 212 7 7 chr11 75119900 75120052 -46723804 + Tigger5 DNA MER2_type 2148 2299 -107 3 1158 442 282 86 109 chr11 75120291 75120466 -46723390 - ID_B1 SINE B4 -52 240 70 3 1158 238 205 148 37 chr11 75121004 75121085 -46722771 - PB1D9 SINE Alu 0 120 31 3 1158 240 250 60 48 chr11 75121033 75121102 -46722754 - MT2B LTR ERVL -365 236 165 3 1158 823 96 168 0 chr11 75121102 75121227 -46722629 - B1_Mus1 SINE Alu -1 147 2 3 1158 240 250 60 48 chr11 75121227 75121241 -46722615 - MT2B LTR ERVL -437 164 152 3 1158 535 245 90 14 chr11 75121289 75121434 -46722422 - RSINE1 SINE B4 0 165 10 3 1158 610 265 15 0 chr11 75121491 75121627 -46722229 - RSINE1 SINE B4 -24 141 4 3 1158 355 320 79 42 chr11 75121667 75121856 -46722000 - MER58A DNA MER1_type -1 223 28 3 1158 593 210 73 0 chr11 75122102 75122226 -46721630 - B1_Mur2 SINE Alu -16 133 1 3 1158 329 217 29 0 chr11 75122303 75122372 -46721484 + ID4_ SINE ID 1 71 -12 3 1158 622 189 148 7 chr11 75122413 75122562 -46721294 + B3 SINE B2 1 170 -46 3 1158 359 265 81 10 chr11 75122575 75122674 -46721182 + RSINE1 SINE B4 3 108 -57 3 1158 1458 68 5 10 chr11 75123145 75123338 -46720518 + B2_Mm1a SINE B2 2 193 0 3 1158 376 333 62 14 chr11 75127119 75127265 -46716591 + RSINE1 SINE B4 2 154 -11 3 1158 961 228 15 0 chr11 75127704 75127910 -46715946 - B3 SINE B2 -7 209 1 3 1158 481 295 86 40 chr11 75129852 75130050 -46713806 - B4 SINE B4 -72 220 14 3 1158 1429 49 43 16 chr11 75130058 75130246 -46713610 - B2_Mm2 SINE B2 -1 194 2 3 1158 346 245 144 9 chr11 75130349 75130460 -46713396 - RSINE1 SINE B4 -36 129 4 3 1158 1169 172 75 135 chr11 75130784 75131133 -46712723 + RMER1B Other Other 722 1049 -17 3 1158 222 156 44 0 chr11 75131167 75131212 -46712644 + B1F2 SINE Alu 21 67 -82 3 1158 1276 87 6 6 chr11 75131460 75131634 -46712222 + B2_Mm1a SINE B2 2 175 -18 3 1158 610 202 18 0 chr11 75131712 75131821 -46712035 - ID_B1 SINE B4 -2 222 112 3 1158 324 0 0 0 chr11 75131990 75132026 -46711830 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 1158 425 252 76 0 chr11 75133524 75133643 -46710213 - RSINE1 SINE B4 -36 129 2 3 1158 306 241 90 36 chr11 75133850 75133956 -46709900 + B4A SINE B4 121 227 -65 3 1158 354 284 17 8 chr11 75133976 75134093 -46709763 + PB1 SINE Alu 2 119 -8 3 1158 213 88 0 0 chr11 75134125 75134136 -46709720 + (A)n Simple_repeat Simple_repeat 1 11 0 3 1158 1272 34 0 0 chr11 75134136 75134282 -46709574 + B1_Mus2 SINE Alu 2 147 0 3 1158 213 88 0 0 chr11 75134282 75134304 -46709552 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1158 373 220 68 58 chr11 75134418 75134592 -46709264 + ID_B1 SINE B4 1 204 -20 3 1158 648 207 29 22 chr11 75135357 75135495 -46708361 + B1_Mur2 SINE Alu 1 139 -10 3 1158 492 313 133 48 chr11 75136119 75136471 -46707385 + L1MC LINE L1 5260 5641 -2241 3 1158 180 152 0 0 chr11 75136667 75136700 -46707156 + G-rich Low_complexity Low_complexity 1 33 0 3 1158 318 279 81 11 chr11 75136709 75136796 -46707060 + PB1D9 SINE Alu 27 119 -1 3 1158 586 194 236 23 chr11 75137072 75137246 -46706610 + B3 SINE B2 2 212 -4 3 1158 890 116 16 0 chr11 75137282 75137411 -46706445 - B1_Mur3 SINE Alu 0 149 19 3 1158 545 312 61 45 chr11 75137740 75137985 -46705871 - B4A SINE B4 -41 251 3 3 1158 414 39 0 0 chr11 75138033 75138085 -46705771 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1158 757 306 72 51 chr11 75138085 75138460 -46705396 + Lx8 LINE L1 6968 7350 -123 3 1158 753 173 20 48 chr11 75138918 75139064 -46704792 + B1_Mur3 SINE Alu 1 142 -7 3 1158 269 253 144 21 chr11 75139252 75139349 -46704507 + PB1D9 SINE Alu 10 118 -2 3 1158 647 273 66 0 chr11 75140281 75140464 -46703392 + B3A SINE B2 1 195 -3 3 1158 676 253 39 61 chr11 75140464 75140776 -46703080 + L1M5 LINE L1 3710 4014 -2132 3 1158 451 207 157 0 chr11 75140947 75141068 -46702788 - B1F SINE Alu -9 140 1 3 1158 373 200 34 34 chr11 75141254 75141340 -46702516 + ID_B1 SINE B4 115 200 -24 3 1158 353 233 93 0 chr11 75141340 75141426 -46702430 + PB1D10 SINE Alu 1 94 -23 3 1158 1355 106 5 0 chr11 75141445 75141634 -46702222 + B2_Mm1t SINE B2 3 192 -1 3 1158 215 338 14 0 chr11 75141697 75141768 -46702088 + B4A SINE B4 1 72 -220 3 1158 324 145 32 16 chr11 75142723 75142786 -46701070 - tRNA-Cys-TGY tRNA tRNA -10 65 2 3 1158 321 227 15 29 chr11 75142727 75142795 -46701061 - ID4 SINE ID -16 67 1 3 1158 373 309 80 40 chr11 75143079 75143278 -46700578 + B4A SINE B4 9 215 -77 3 1158 284 238 186 10 chr11 75143737 75143839 -46700017 + ID_B1 SINE B4 105 224 0 3 1158 1088 50 14 0 chr11 75143889 75144029 -46699827 + B1_Mus1 SINE Alu 7 148 0 3 1158 606 320 39 17 chr11 75144054 75144232 -46699624 + B3A SINE B2 2 183 -15 3 1158 191 32 0 61 chr11 75144250 75144283 -46699573 + (TAA)n Simple_repeat Simple_repeat 3 33 0 3 1158 764 232 45 0 chr11 75144308 75144463 -46699393 + B3 SINE B2 54 215 -1 3 1158 263 212 22 121 chr11 75144951 75145042 -46698814 - B4A SINE B4 -10 282 201 3 1158 644 225 16 0 chr11 75145072 75145201 -46698655 - B1_Mur2 SINE Alu -13 136 6 3 1158 375 300 66 8 chr11 75145093 75145214 -46698642 - B4 SINE B4 -88 204 77 3 1158 522 252 116 0 chr11 75145226 75145373 -46698483 - RSINE1 SINE B4 0 165 2 3 1158 525 231 51 22 chr11 75145399 75145536 -46698320 - B1_Mur2 SINE Alu -7 142 2 3 1158 727 304 34 26 chr11 75145536 75145765 -46698091 - B4A SINE B4 -60 232 2 3 1158 294 179 0 0 chr11 75145793 75145849 -46698007 + (CATA)n Simple_repeat Simple_repeat 3 58 0 3 1158 354 329 128 13 chr11 75145982 75146216 -46697640 + L1M2 LINE L1 3722 3982 -2161 3 1158 491 267 95 7 chr11 75146375 75146522 -46697334 + RSINE1 SINE B4 1 160 -5 3 1158 321 305 58 88 chr11 75146526 75146731 -46697125 + L1MB8 LINE L1 4355 4553 -1593 3 1158 585 230 228 10 chr11 75147106 75147312 -46696544 - MER2 DNA MER2_type -92 253 3 3 1158 248 247 44 11 chr11 75147357 75147447 -46696409 + L1MB8 LINE L1 5687 5779 -395 3 1158 517 185 74 0 chr11 75147447 75147555 -46696301 + PB1D10 SINE Alu 2 117 0 3 1158 277 223 60 5 chr11 75147561 75147649 -46696207 + ID4 SINE ID 1 96 -56 3 1158 325 245 18 26 chr11 75147833 75147946 -46695910 + L1MB8 LINE L1 5998 6109 -69 3 1158 1041 79 65 0 chr11 75147958 75148097 -46695759 - B1_Mus1 SINE Alu 0 148 1 3 1158 662 215 42 49 chr11 75148254 75148396 -46695460 - ID_B1 SINE B4 0 224 84 3 1158 291 271 0 14 chr11 75148503 75148572 -46695284 + ID4 SINE ID 25 93 -59 3 1158 247 221 348 51 chr11 75148605 75148743 -46695113 + ID_B1 SINE B4 44 222 -2 3 1158 1061 177 53 24 chr11 75149121 75149329 -46694527 + B3 SINE B2 3 216 0 3 1158 516 263 99 71 chr11 75149361 75149643 -46694213 + B4A SINE B4 1 290 -2 3 1158 299 218 114 13 chr11 75149687 75149766 -46694090 + RSINE1 SINE B4 15 101 -64 3 1158 362 287 165 60 chr11 75149882 75150149 -46693707 + HAL1b LINE L1 264 558 -1451 3 1158 1071 265 135 3 chr11 75150163 75150496 -46693360 + MTEa LTR MaLR 3 379 0 3 1158 327 261 10 50 chr11 75151094 75151193 -46692663 - B4 SINE B4 0 292 217 3 1158 503 286 85 28 chr11 75151193 75151405 -46692451 - ID_B1 SINE B4 0 224 1 3 1158 555 298 72 48 chr11 75151552 75151760 -46692096 - B4A SINE B4 -78 214 2 3 1158 250 210 17 0 chr11 75151844 75151896 -46691960 + B1_Mur4 SINE Alu 41 97 -23 3 1158 186 71 0 0 chr11 75151900 75151928 -46691928 + (AGATG)n Simple_repeat Simple_repeat 3 30 0 3 1158 257 285 105 23 chr11 75152047 75152180 -46691676 + BC1_Mm scRNA scRNA 2 145 -7 3 1158 504 0 0 0 chr11 75152204 75152260 -46691596 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1158 325 114 0 0 chr11 75152270 75152314 -46691542 + B3A SINE B2 7 50 -148 3 1158 694 157 48 24 chr11 75152331 75152455 -46691401 + B1_Mur1 SINE Alu 22 148 -1 3 1158 853 71 18 0 chr11 75152525 75152637 -46691219 - PB1D9 SINE Alu -6 114 1 3 1158 789 203 21 21 chr11 75152772 75152961 -46690895 + B3 SINE B2 2 190 -5 3 1158 884 204 154 6 chr11 75152985 75153167 -46690689 + B3 SINE B2 1 209 -7 3 1158 28 0 0 0 chr11 75153369 75153397 -46690459 + AT_rich Low_complexity Low_complexity 1 28 0 3 1158 847 85 99 8 chr11 75155236 75155367 -46688489 + B1_Mur3 SINE Alu 7 149 0 3 1158 238 0 93 37 chr11 75155379 75155433 -46688423 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 3 1158 227 293 91 0 chr11 75155764 75155863 -46687993 + RSINE1 SINE B4 30 137 -28 3 1158 461 282 9 0 chr11 75156092 75156202 -46687654 - ID_B1 SINE B4 0 224 114 3 1158 277 149 21 0 chr11 75156191 75156238 -46687618 + Charlie1a DNA MER1_type 688 735 -720 3 1158 249 222 122 12 chr11 75156239 75156257 -46687599 - ID_B1 SINE B4 -28 196 106 3 1158 300 159 125 16 chr11 75156257 75156321 -46687535 - PB1D10 SINE Alu -22 95 25 3 1158 294 224 25 38 chr11 75156322 75156401 -46687455 + Charlie1a DNA MER1_type 754 831 -624 3 1158 344 238 72 108 chr11 75156412 75156569 -46687287 + PB1D10 SINE Alu 1 144 -3 4 1158 385 308 77 0 chr11 75156661 75156791 -46687065 + B1_Mur1 SINE Alu 1 140 -9 4 1158 257 333 81 34 chr11 75156666 75156815 -46687041 + B4A SINE B4 91 246 -46 4 1158 561 277 29 0 chr11 75156816 75156953 -46686903 + RSINE1 SINE B4 2 142 -23 4 1158 269 286 39 0 chr11 75156987 75157064 -46686792 + ID4 SINE ID 4 83 0 4 1158 588 241 234 30 chr11 75157289 75157558 -46686298 + L1M5 LINE L1 5327 5650 -529 4 1158 23 78 0 0 chr11 75157590 75157641 -46686215 + AT_rich Low_complexity Low_complexity 1 51 0 4 1158 267 246 0 0 chr11 75157652 75157717 -46686139 + L1M5 LINE L1 5663 5727 -452 4 1158 405 252 61 0 chr11 75157735 75157834 -46686022 + PB1 SINE Alu 21 125 -2 4 1158 394 281 166 33 chr11 75157880 75158031 -46685825 - ID_B1 SINE B4 -45 179 9 4 1158 255 125 0 0 chr11 75158187 75158227 -46685629 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1158 491 235 88 0 chr11 75158238 75158340 -46685516 - RSINE1 SINE B4 -53 112 2 4 1158 455 259 14 56 chr11 75158379 75158522 -46685334 + B1F SINE Alu 5 141 -8 4 1158 538 212 111 10 chr11 75158668 75158848 -46685008 + B3 SINE B2 1 198 0 4 1158 1109 90 0 0 chr11 75158851 75158996 -46684860 + B1_Mus2 SINE Alu 3 147 0 4 1158 725 159 268 6 chr11 75159014 75159178 -46684678 + B3 SINE B2 2 208 -8 4 1158 608 87 65 0 chr11 75159211 75159303 -46684553 + B1_Mus1 SINE Alu 1 98 -50 4 1158 239 225 171 24 chr11 75159499 75159581 -46684275 + MT2B LTR ERVL 164 257 -344 4 1158 340 179 16 33 chr11 75159542 75159632 -46684224 + B1_Mur2 SINE Alu 66 149 0 4 1158 1687 26 0 0 chr11 75160516 75160708 -46683148 + B2_Mm1a SINE B2 2 193 0 4 1158 364 271 36 58 chr11 75160779 75160916 -46682940 + RSINE1 SINE B4 1 134 -31 4 1158 270 322 110 62 chr11 75162215 75162506 -46681350 - L2b LINE L2 -39 3336 3032 4 1158 521 220 86 57 chr11 75162507 75162647 -46681209 + ID_B1 SINE B4 80 223 -1 4 1158 240 287 171 11 chr11 75162643 75162731 -46681125 + MT2B LTR ERVL 156 257 -344 4 1158 402 152 89 0 chr11 75162667 75162746 -46681110 + PB1D9 SINE Alu 34 119 -1 4 1158 1497 207 129 74 chr11 75163782 75164309 -46679547 - Lx9 LINE L1 0 7644 7089 4 1158 228 132 0 26 chr11 75164404 75164443 -46679413 + U6 snRNA snRNA 5 42 -65 4 1158 467 233 26 8 chr11 75164509 75164626 -46679230 + MLT1E3 LTR MaLR 500 618 -6 4 1158 536 274 20 27 chr11 75164673 75164823 -46679033 + MER58D DNA MER1_type 2 150 -236 4 1158 210 304 0 0 chr11 75164856 75164912 -46678944 + B4 SINE B4 3 58 -234 4 1158 319 273 193 35 chr11 75164934 75165048 -46678808 + RSINE1 SINE B4 33 164 -1 4 1158 392 241 186 63 chr11 75165052 75165273 -46678583 + MER58D DNA MER1_type 139 386 0 4 1158 430 311 23 80 chr11 75165317 75165492 -46678364 - RSINE1 SINE B4 0 165 1 4 1158 321 327 273 23 chr11 75165497 75165666 -46678190 - L2b LINE L2 -607 2812 2624 4 1158 1471 58 26 0 chr11 75165666 75165855 -46678001 - B2_Mm2 SINE B2 0 195 2 4 1158 321 327 273 23 chr11 75165855 75166117 -46677739 - L2b LINE L2 -796 2623 2273 4 1158 428 298 97 0 chr11 75166121 75166245 -46677611 - MER112 DNA MER1_type -125 136 1 4 1158 1172 76 0 0 chr11 75166472 75166617 -46677239 + B1_Mus2 SINE Alu 1 145 -2 4 1158 217 336 75 8 chr11 75166799 75166919 -46676937 + L2 LINE L2 2439 2566 -853 4 1158 931 240 79 115 chr11 75166927 75167318 -46676538 - MTE2a LTR MaLR -2 377 1 4 1158 417 193 183 8 chr11 75167350 75167457 -46676399 + ID_B1 SINE B4 82 209 -15 4 1158 186 43 0 0 chr11 75167457 75167480 -46676376 + (GGAAA)n Simple_repeat Simple_repeat 4 26 0 4 1158 417 193 183 8 chr11 75167480 75167492 -46676364 + ID_B1 SINE B4 210 221 -3 4 1158 23 33 0 0 chr11 75167615 75167645 -46676211 + AT_rich Low_complexity Low_complexity 1 30 0 4 1158 534 270 253 34 chr11 75167695 75168102 -46675754 + L1MEg2 LINE L1 1 713 -5739 4 1158 363 315 107 29 chr11 75168122 75168339 -46675517 + L1MEg2 LINE L1 567 796 -5656 4 1158 215 250 20 20 chr11 75168355 75168403 -46675453 + B4A SINE B4 33 80 -212 4 1158 940 208 108 18 chr11 75168403 75168452 -46675404 - MT2A LTR ERVL 0 533 484 4 1158 857 143 36 0 chr11 75168452 75168592 -46675264 - B1_Mus2 SINE Alu 0 147 3 4 1158 940 208 108 18 chr11 75168592 75168821 -46675035 - MT2A LTR ERVL -50 483 230 4 1158 230 148 148 0 chr11 75168824 75168878 -46674978 + PB1D10 SINE Alu 24 85 -32 4 1158 315 260 14 0 chr11 75168892 75168965 -46674891 + MTE-int LTR MaLR 1478 1551 -29 4 1158 504 276 35 117 chr11 75169011 75169241 -46674615 - MTE-int LTR MaLR -654 926 716 4 1158 476 246 112 0 chr11 75169415 75169549 -46674307 - B1F1 SINE Alu 0 149 1 4 1158 431 333 30 8 chr11 75169594 75169727 -46674129 - RSINE1 SINE B4 -28 137 2 4 1158 614 223 30 8 chr11 75169824 75169970 -46673886 - B1_Mur1 SINE Alu 0 150 2 4 1158 299 237 76 69 chr11 75169970 75170013 -46673843 - MT2A LTR ERVL -444 157 114 4 1158 420 340 32 19 chr11 75170048 75170204 -46673652 + ORR1E LTR MaLR 22 179 -180 4 1158 2014 121 238 44 chr11 75170339 75170798 -46673058 - RLTR6_Mm LTR ERV1 -70 584 37 4 1158 67814 19 19 1 chr11 75170907 75178547 -46665309 - RLTR6-int LTR ERV1 0 7778 1 4 1158 2158 116 227 44 chr11 75178548 75179028 -46664828 - RLTR6_Mm LTR ERV1 -50 604 37 4 1158 621 308 99 10 chr11 75179208 75179500 -46664356 - MTE-int LTR MaLR -1081 499 182 4 1158 3864 141 16 114 chr11 75179513 75180352 -46663504 + RMER6A LTR ERVK 1 756 0 4 1158 321 307 62 23 chr11 75181415 75181545 -46662311 + MER2B DNA MER2_type 11 145 -191 4 1158 584 305 12 6 chr11 75181630 75181798 -46662058 - B3 SINE B2 0 216 48 4 1158 433 267 9 0 chr11 75181858 75181974 -46661882 + MER2 DNA MER2_type 87 203 -142 4 1158 302 242 33 0 chr11 75182062 75182153 -46661703 + MER2B DNA MER2_type 190 283 -53 4 1158 802 219 86 9 chr11 75182208 75182402 -46661454 - B3 SINE B2 -1 194 1 4 1158 267 31 0 0 chr11 75182402 75182434 -46661422 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 4 1158 330 290 133 30 chr11 75182463 75182598 -46661258 - B1F2 SINE Alu 0 149 1 4 1158 627 261 21 0 chr11 75182603 75182745 -46661111 - B1F1 SINE Alu -4 145 1 4 1158 1826 132 34 48 chr11 75182761 75183174 -46660682 + RMER17C LTR ERVK 1 407 -3 4 1158 1104 185 45 77 chr11 75183358 75183751 -46660105 - ORR1C2 LTR MaLR 0 384 5 4 1158 1111 216 140 11 chr11 75183801 75184166 -46659690 + MTD LTR MaLR 6 417 -2 4 1158 599 176 0 40 chr11 75184617 75184741 -46659115 - B1F2 SINE Alu -1 148 30 4 1158 769 307 11 38 chr11 75185038 75185407 -46658449 - L1M5 LINE L1 -1483 4663 4305 4 1158 28 29 0 0 chr11 75185741 75185776 -46658080 + AT_rich Low_complexity Low_complexity 1 35 0 4 1158 349 297 24 41 chr11 75185907 75186030 -46657826 - ORR1E LTR MaLR -238 121 1 4 1158 498 139 0 0 chr11 75186119 75186205 -46657651 + (TCC)n Simple_repeat Simple_repeat 3 88 0 4 1158 445 228 195 39 chr11 75186208 75186336 -46657520 - B1_Mur1 SINE Alu 0 149 2 4 1158 957 201 209 51 chr11 75186565 75186880 -46656976 + ORR1C2 LTR MaLR 4 368 -16 4 1158 1215 156 131 8 chr11 75186885 75187137 -46656719 + ORR1A3 LTR MaLR 1 283 -43 4 1158 1193 50 6 0 chr11 75187140 75187300 -46656556 + B2_Mm2 SINE B2 1 161 -34 4 1158 261 0 0 0 chr11 75187300 75187329 -46656527 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 4 1158 384 44 0 6 chr11 75187331 75187388 -46656468 + ORR1A3 LTR MaLR 272 339 -7 4 1158 701 237 206 36 chr11 75187435 75187741 -46656115 - RMER15 LTR ERVL -191 384 27 4 1158 1747 219 92 38 chr11 75187862 75188618 -46655238 + L1M4 LINE L1 4932 5736 -444 4 1158 578 167 105 53 chr11 75188631 75188749 -46655107 - ORR1C1 LTR MaLR -11 367 242 4 1158 376 174 105 32 chr11 75188749 75188844 -46655012 - RMER12 LTR ERVK -1 1321 1220 4 1158 4631 140 90 49 chr11 75188863 75189509 -46654347 - RMER12 LTR ERVK -245 1077 387 4 1158 1150 68 7 0 chr11 75189509 75189655 -46654201 - B1_Mus1 SINE Alu 0 148 2 4 1158 4631 140 90 49 chr11 75189655 75190043 -46653813 - RMER12 LTR ERVK -936 386 2 4 1158 265 268 0 0 chr11 75190043 75190099 -46653757 - ORR1C1 LTR MaLR -136 242 187 4 1158 2993 129 205 12 chr11 75190101 75190746 -46653110 - RMER6A LTR ERVK -15 741 18 4 1158 578 200 20 60 chr11 75190743 75190892 -46652964 - ORR1C1 LTR MaLR -235 143 1 4 1158 220 133 22 0 chr11 75190995 75191040 -46652816 + T-rich Low_complexity Low_complexity 3 48 0 4 1158 207 0 0 0 chr11 75191063 75191086 -46652770 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1158 1200 62 0 0 chr11 75191098 75191244 -46652612 - B1_Mm SINE Alu 0 147 2 4 1158 815 225 19 12 chr11 75191729 75191891 -46651965 + RSINE1 SINE B4 3 165 0 4 1158 739 169 81 0 chr11 75191942 75192078 -46651778 + B1_Mus2 SINE Alu 1 147 0 4 1158 800 69 208 0 chr11 75192206 75192336 -46651520 + B2_Mm2 SINE B2 2 158 -37 4 1158 207 0 0 0 chr11 75192337 75192360 -46651496 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1158 390 42 0 0 chr11 75192388 75192436 -46651420 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1158 348 127 0 0 chr11 75192509 75192564 -46651292 + (T)n Simple_repeat Simple_repeat 1 55 0 4 1158 490 29 0 14 chr11 75192564 75192633 -46651223 - B1_Mur4 SINE Alu 0 150 83 4 1158 313 188 0 48 chr11 75192633 75192648 -46651208 - ID_B1 SINE B4 0 224 145 4 1158 554 154 97 174 chr11 75192660 75192841 -46651015 + B3 SINE B2 15 181 -14 4 1158 1234 41 0 0 chr11 75192841 75192987 -46650869 + B1_Mm SINE Alu 2 147 0 4 1158 430 154 97 174 chr11 75192987 75193001 -46650855 + B2_Mm2 SINE B2 182 195 0 4 1158 348 222 40 0 chr11 75193060 75193152 -46650704 + B1F2 SINE Alu 9 103 -46 4 1158 226 293 66 13 chr11 75193091 75193167 -46650689 + B4 SINE B4 128 207 -85 4 1158 675 224 7 7 chr11 75193251 75193386 -46650470 - B1_Mur4 SINE Alu -10 140 6 4 1158 515 283 83 12 chr11 75193396 75193564 -46650292 + B3 SINE B2 37 216 0 4 1158 1227 70 0 0 chr11 75193630 75193801 -46650055 + B2_Mm2 SINE B2 2 172 -23 4 1158 575 246 7 21 chr11 75193856 75194001 -46649855 + B1_Mur4 SINE Alu 6 148 -2 4 1158 827 199 192 6 chr11 75194198 75194380 -46649476 - B3 SINE B2 0 216 1 4 1158 631 245 28 7 chr11 75194386 75194530 -46649326 - B1_Mur2 SINE Alu -1 148 2 5 1158 303 28 0 0 chr11 75194695 75194731 -46649125 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1158 257 51 26 0 chr11 75194767 75194806 -46649050 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1158 1019 170 0 5 chr11 75194952 75195141 -46648715 - B2_Mm2 SINE B2 0 195 8 5 1158 399 277 97 61 chr11 75195164 75195329 -46648527 - B3A SINE B2 -1 215 45 5 1158 186 71 0 0 chr11 75195989 75196017 -46647839 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1158 838 188 21 0 chr11 75196308 75196452 -46647404 + B1_Mur1 SINE Alu 2 148 -1 5 1158 603 40 0 0 chr11 75196477 75196551 -46647305 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 5 1158 26 0 0 0 chr11 75196652 75196678 -46647178 + AT_rich Low_complexity Low_complexity 1 26 0 5 1158 2001 24 177 0 chr11 75196684 75196932 -46646924 + RLTR10B LTR ERVK 1 292 0 5 1158 921 181 86 27 chr11 75196932 75197119 -46646737 - B3 SINE B2 -18 198 1 5 1158 379 277 52 35 chr11 75197467 75197583 -46646273 + ID_B1 SINE B4 94 211 -13 5 1158 394 233 238 30 chr11 75197903 75198067 -46645789 + B3A SINE B2 1 198 0 5 1158 290 262 0 0 chr11 75198080 75198141 -46645715 + ID_B1 SINE B4 164 224 0 5 1158 448 278 181 29 chr11 75198264 75198679 -46645177 - L1ME4a LINE L1 -1 6123 5646 5 1158 323 254 219 0 chr11 75199040 75199154 -46644702 + B3A SINE B2 38 176 -22 5 1158 526 327 6 18 chr11 75199183 75199348 -46644508 + RSINE1 SINE B4 3 165 0 5 1158 596 138 110 0 chr11 75199350 75199459 -46644397 + B1_Mm SINE Alu 27 147 0 5 1158 617 98 0 0 chr11 75199461 75199553 -46644303 + BC1_Mm scRNA scRNA 1 92 -60 5 1158 247 35 0 0 chr11 75199553 75199582 -46644274 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 5 1158 756 104 0 43 chr11 75199583 75199724 -46644132 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 5 1158 267 267 0 74 chr11 75199777 75199858 -46643998 + ID4 SINE ID 6 80 -3 5 1158 246 95 0 0 chr11 75200115 75200157 -46643699 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 5 1158 515 227 43 43 chr11 75200196 75200334 -46643522 - ID_B1 SINE B4 0 224 87 5 1158 1524 58 16 0 chr11 75200454 75200642 -46643214 + B2_Mm2 SINE B2 2 192 -3 5 1158 214 162 0 0 chr11 75200668 75200705 -46643151 + PB1D10 SINE Alu 47 83 -34 5 1158 678 196 101 8 chr11 75201349 75201524 -46642332 + B3 SINE B2 27 204 -12 5 1158 675 167 120 8 chr11 75201749 75201882 -46641974 + B1_Mur4 SINE Alu 2 149 -1 5 1158 412 282 122 0 chr11 75202076 75202207 -46641649 + B1F1 SINE Alu 3 149 0 5 1158 198 0 0 0 chr11 75202303 75202325 -46641531 + (CTG)n Simple_repeat Simple_repeat 3 24 0 5 1158 221 279 173 25 chr11 75202686 75202848 -46641008 - MIR SINE MIR 0 262 77 5 1158 900 189 0 0 chr11 75202879 75203027 -46640829 - B1_Mur2 SINE Alu 0 149 2 5 1158 429 206 44 113 chr11 75203084 75203243 -46640613 + B1_Mur3 SINE Alu 1 148 -1 5 1158 254 277 31 0 chr11 75203352 75203417 -46640439 + GA-rich Low_complexity Low_complexity 5 71 0 5 1158 541 268 8 0 chr11 75204886 75205009 -46638847 + ID_B1 SINE B4 96 219 -5 5 1158 673 178 96 7 chr11 75205019 75205155 -46638701 + B1_Mur1 SINE Alu 1 148 -1 5 1158 1304 77 21 27 chr11 75205195 75205382 -46638474 - B2_Mm2 SINE B2 -8 187 2 5 1158 425 234 53 0 chr11 75205465 75205559 -46638297 - RSINE1 SINE B4 -63 102 4 5 1158 1132 141 60 0 chr11 75205573 75205757 -46638099 - B2_Mm2 SINE B2 0 195 1 5 1158 431 296 96 18 chr11 75205809 75206029 -46637827 + B4A SINE B4 1 237 -55 5 1158 624 223 14 0 chr11 75206157 75206296 -46637560 + B1_Mur1 SINE Alu 9 149 0 5 1158 898 243 18 88 chr11 75206300 75206482 -46637374 - B3 SINE B2 -6 210 44 5 1158 569 44 33 0 chr11 75206482 75206572 -46637284 - L1Md_F3 LINE L1 0 6584 6492 5 1158 898 243 18 88 chr11 75206572 75206615 -46637241 - B3 SINE B2 -173 43 1 5 1158 2068 214 55 66 chr11 75206928 75207562 -46636294 - RMER20B LTR ERVK 0 627 1 5 1158 278 233 0 0 chr11 75207626 75207686 -46636170 + RSINE1 SINE B4 3 62 -103 5 1158 894 160 14 0 chr11 75207706 75207850 -46636006 - B1_Mur4 SINE Alu 0 150 5 5 1158 1569 52 5 5 chr11 75207867 75208060 -46635796 + B2_Mm1t SINE B2 1 193 0 5 1158 873 176 21 0 chr11 75208465 75208607 -46635249 + B1_Mur3 SINE Alu 4 148 -1 5 1158 652 145 17 25 chr11 75208682 75208802 -46635054 + PB1D9 SINE Alu 1 119 -1 5 1158 1280 222 148 6 chr11 75209105 75209463 -46634393 + MTD LTR MaLR 6 414 -5 5 1158 1131 61 0 51 chr11 75209490 75209646 -46634210 - B1_Mus1 SINE Alu 0 148 1 5 1158 21 82 0 0 chr11 75209653 75209702 -46634154 + AT_rich Low_complexity Low_complexity 1 49 0 5 1158 456 184 0 67 chr11 75209794 75209899 -46633957 + PB1D10 SINE Alu 18 115 -2 5 1158 361 217 24 0 chr11 75210107 75210190 -46633666 - L1M5 LINE L1 -508 5616 5532 5 1158 286 258 90 0 chr11 75211976 75212065 -46631791 - Tigger15a DNA TcMar -456 259 163 5 1158 279 247 167 11 chr11 75212161 75212251 -46631605 - PB1D10 SINE Alu 0 117 14 5 1158 238 259 34 45 chr11 75213593 75213682 -46630174 - BC1_Mm scRNA scRNA -63 89 2 5 1158 189 0 0 0 chr11 75214132 75214153 -46629703 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1158 285 208 130 0 chr11 75214217 75214294 -46629562 + PB1D7 SINE Alu 21 107 -13 5 1158 411 272 23 53 chr11 75214809 75214941 -46628915 - B1F1 SINE Alu -8 141 14 5 1158 890 103 65 14 chr11 75215142 75215280 -46628576 - B1_Mur4 SINE Alu -1 149 5 5 1158 403 235 319 0 chr11 75217405 75217571 -46626285 + MER20 DNA MER1_type 1 219 0 5 1158 250 296 25 0 chr11 75217589 75217670 -46626186 + ID SINE ID 1 83 -141 5 1158 238 222 24 24 chr11 75217605 75217688 -46626168 + BC1_Mm scRNA scRNA 17 99 -53 5 1158 1094 43 58 0 chr11 75218683 75218822 -46625034 + B1_Mm SINE Alu 1 147 0 5 1158 267 21 85 0 chr11 75218822 75218869 -46624987 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 5 1158 414 245 49 0 chr11 75219381 75219483 -46624373 - PB1D7 SINE Alu -13 107 1 5 1158 863 176 99 0 chr11 75220449 75220631 -46623225 + B3 SINE B2 11 210 -6 5 1158 328 260 89 10 chr11 75220703 75220804 -46623052 + PB1D10 SINE Alu 1 109 -8 5 1158 583 242 59 99 chr11 75220810 75220973 -46622883 + B3A SINE B2 2 161 -34 5 1158 549 0 0 0 chr11 75220973 75221034 -46622822 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1158 418 242 59 99 chr11 75221034 75221072 -46622784 + B2_Mm2 SINE B2 162 194 -1 5 1158 327 233 8 127 chr11 75221095 75221213 -46622643 + MT2B LTR ERVL 161 264 -337 5 1158 773 151 0 8 chr11 75221108 75221235 -46622621 + B1_Mur2 SINE Alu 11 136 -13 5 1158 360 0 0 0 chr11 75221235 75221275 -46622581 + (TGGG)n Simple_repeat Simple_repeat 2 41 0 5 1158 552 68 0 0 chr11 75221275 75221347 -46622509 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 5 1158 454 301 93 54 chr11 75221352 75221556 -46622300 + B3A SINE B2 5 216 0 5 1158 507 243 28 0 chr11 75221561 75221668 -46622188 + PB1D10 SINE Alu 2 111 -6 5 1158 734 190 36 0 chr11 75221680 75221817 -46622039 + B1_Mur1 SINE Alu 2 143 -6 5 1158 790 226 10 41 chr11 75221827 75222021 -46621835 + B4 SINE B4 19 206 -86 5 1158 479 289 68 34 chr11 75222064 75222211 -46621645 + RSINE1 SINE B4 13 164 -1 5 1158 1009 188 76 25 chr11 75222247 75222444 -46621412 - B3 SINE B2 -9 207 1 5 1158 1535 50 0 6 chr11 75222462 75222644 -46621212 + B2_Mm2 SINE B2 1 181 -14 5 1158 943 91 0 47 chr11 75222663 75222813 -46621043 - B1_Mus1 SINE Alu 0 148 6 5 1158 315 0 0 0 chr11 75223924 75223959 -46619897 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1158 203 0 37 0 chr11 75224143 75224170 -46619686 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1158 1966 145 97 6 chr11 75224783 75225144 -46618712 - MTD LTR MaLR -7 412 19 5 1158 708 162 66 0 chr11 75225386 75225522 -46618334 - B1_Mur2 SINE Alu 0 149 5 5 1158 518 268 147 20 chr11 75225702 75225766 -46618090 + ID SINE ID 2 74 -150 5 1158 2084 132 79 79 chr11 75225766 75226160 -46617696 + ORR1B1 LTR MaLR 1 394 0 5 1158 1247 34 0 20 chr11 75226167 75226317 -46617539 + B1_Mus1 SINE Alu 2 148 0 5 1158 518 268 147 20 chr11 75226317 75226442 -46617414 + ID_B1 SINE B4 80 224 0 5 1158 413 188 13 6 chr11 75226474 75226571 -46617285 - ID4_ SINE ID -48 104 9 5 1158 290 87 0 21 chr11 75226578 75226625 -46617231 + (CCTG)n Simple_repeat Simple_repeat 1 46 0 5 1158 1013 182 11 0 chr11 75226625 75226801 -46617055 - B3 SINE B2 -12 204 27 5 1158 306 0 0 0 chr11 75226835 75226869 -46616987 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 5 1158 736 92 108 0 chr11 75226869 75226989 -46616867 - B1_Mur3 SINE Alu -7 142 10 5 1158 297 186 26 91 chr11 75226963 75227040 -46616816 - B2_Mm2 SINE B2 -122 73 2 5 1158 279 256 99 11 chr11 75227043 75227134 -46616722 - PB1D10 SINE Alu -1 116 18 5 1158 215 300 28 14 chr11 75227080 75227151 -46616705 - ID_B1 SINE B4 -73 151 80 5 1158 181 233 23 0 chr11 75227279 75227322 -46616534 - MIRm SINE MIR -149 127 84 5 1158 184 197 90 15 chr11 75228177 75228244 -46615612 - MIRb SINE MIR -190 78 7 5 1158 279 0 0 0 chr11 75228361 75228392 -46615464 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1158 217 253 171 57 chr11 75228962 75229050 -46614806 + PB1D9 SINE Alu 2 99 -21 6 1158 891 246 136 0 chr11 75230166 75230402 -46613454 + B4 SINE B4 2 269 -23 6 1158 279 0 0 0 chr11 75230416 75230447 -46613409 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1158 268 392 0 15 chr11 75230649 75230781 -46613075 - BC1_Mm scRNA scRNA -22 130 1 6 1158 760 142 0 8 chr11 75230854 75230975 -46612881 - B1_Mus1 SINE Alu -1 147 28 6 1158 226 344 0 0 chr11 75231020 75231084 -46612772 + tRNA-Ala-GCG tRNA tRNA 3 66 -9 6 1158 435 286 0 35 chr11 75231971 75232087 -46611769 - PB1D10 SINE Alu -5 112 1 6 1158 223 306 27 27 chr11 75232119 75232193 -46611663 + MIR SINE MIR 15 88 -174 6 1158 543 16 0 0 chr11 75232210 75232274 -46611582 + (GTATG)n Simple_repeat Simple_repeat 2 65 0 6 1158 1215 72 0 0 chr11 75232276 75232456 -46611400 + (TATAG)n Simple_repeat Simple_repeat 1 180 0 6 1158 1014 78 0 37 chr11 75232471 75232516 -46611340 + (TATTG)n Simple_repeat Simple_repeat 3 45 0 6 1158 1167 93 0 0 chr11 75232516 75232694 -46611162 + (TATAG)n Simple_repeat Simple_repeat 1 180 -183 6 1158 1014 78 0 37 chr11 75232694 75232701 -46611155 + (TATTG)n Simple_repeat Simple_repeat 3 7 0 6 1158 1167 93 0 0 chr11 75232701 75232879 -46610977 + (TATAG)n Simple_repeat Simple_repeat 181 363 0 6 1158 1014 78 0 37 chr11 75232879 75232956 -46610900 + (TATTG)n Simple_repeat Simple_repeat 1 77 0 6 1158 1128 89 0 0 chr11 75232956 75233136 -46610720 + (TATAG)n Simple_repeat Simple_repeat 1 180 0 6 1158 1014 78 0 37 chr11 75233136 75233191 -46610665 + (TATTG)n Simple_repeat Simple_repeat 1 55 0 6 1158 481 250 45 0 chr11 75233276 75233388 -46610468 - PB1D10 SINE Alu 0 117 1 6 1158 195 308 68 0 chr11 75233484 75233555 -46610301 - L3 LINE CR1 -316 4192 4104 6 1159 198 318 108 63 chr11 75236376 75236534 -46607322 + MIR3 SINE MIR 11 175 -33 6 1159 764 212 7 0 chr11 75236550 75236701 -46607155 + B3A SINE B2 1 152 -46 6 1159 360 0 0 0 chr11 75236701 75236741 -46607115 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1159 322 294 83 78 chr11 75236741 75236752 -46607104 + B2_Mm1a SINE B2 162 168 -25 6 1159 892 167 51 0 chr11 75236752 75236890 -46606966 + B1_Mur4 SINE Alu 1 145 -5 6 1159 333 0 0 0 chr11 75236891 75236928 -46606928 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1159 322 294 83 78 chr11 75236928 75236954 -46606902 + B2_Mm1a SINE B2 169 193 0 6 1159 491 242 121 0 chr11 75237317 75237449 -46606407 + ID_B1 SINE B4 77 224 0 6 1159 269 314 190 0 chr11 75237462 75237583 -46606273 + RSINE1 SINE B4 4 147 -18 6 1159 213 65 0 0 chr11 75237583 75237614 -46606242 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 6 1159 985 158 0 7 chr11 75237795 75237942 -46605914 + B1_Mur4 SINE Alu 2 147 -3 6 1159 183 283 38 66 chr11 75238074 75238180 -46605676 + L3 LINE CR1 4216 4318 -171 6 1159 540 242 30 15 chr11 75238216 75238350 -46605506 + RSINE1 SINE B4 24 159 -6 6 1159 377 167 0 0 chr11 75238513 75238585 -46605271 - PB1D9 SINE Alu -4 116 45 6 1159 232 281 47 0 chr11 75238650 75238714 -46605142 + ID_B1 SINE B4 85 151 -73 6 1159 2791 113 11 2 chr11 75238735 75239177 -46604679 + Lx2A1 LINE L1 6504 6949 -59 6 1159 552 291 7 7 chr11 75239187 75239339 -46604517 + RSINE1 SINE B4 12 163 -2 6 1159 579 219 26 46 chr11 75239602 75239755 -46604101 + B3A SINE B2 45 194 -4 6 1159 468 167 42 100 chr11 75239822 75239942 -46603914 + MT2B LTR ERVL 152 264 -337 6 1159 1065 64 0 0 chr11 75239836 75239977 -46603879 + B1_Mus2 SINE Alu 7 147 0 6 1159 1247 41 0 7 chr11 75239978 75240125 -46603731 + B1_Mus1 SINE Alu 1 146 -2 6 1159 840 226 17 0 chr11 75240125 75240302 -46603554 + B3 SINE B2 31 210 -6 6 1159 24 53 0 0 chr11 75240308 75240346 -46603510 + AT_rich Low_complexity Low_complexity 1 38 0 6 1159 1118 52 0 7 chr11 75240349 75240486 -46603370 + B1_Mus2 SINE Alu 1 136 -11 6 1159 185 0 40 0 chr11 75240486 75240511 -46603345 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 1159 651 161 0 25 chr11 75240640 75240761 -46603095 + B1_Mur2 SINE Alu 22 139 -10 6 1159 508 125 0 0 chr11 75240786 75240858 -46602998 + B2_Mm2 SINE B2 1 72 -123 6 1159 35 54 0 0 chr11 75240858 75240914 -46602942 + AT_rich Low_complexity Low_complexity 1 56 0 6 1159 1413 86 5 5 chr11 75240998 75241186 -46602670 - B2_Mm2 SINE B2 -6 189 2 6 1159 203 106 0 41 chr11 75242416 75242465 -46601391 + (CAGAGA)n Simple_repeat Simple_repeat 1 47 0 6 1159 284 304 25 0 chr11 75242487 75242566 -46601290 + ID4 SINE ID 2 82 -1 6 1159 215 250 0 0 chr11 75242967 75243015 -46600841 - ID4 SINE ID -13 70 23 6 1159 235 378 41 0 chr11 75243188 75243286 -46600570 - MER94 DNA AcHobo -31 103 2 6 1159 225 108 0 0 chr11 75243523 75243560 -46600296 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1159 1227 48 7 0 chr11 75243562 75243708 -46600148 - B1_Mus1 SINE Alu 0 148 2 6 1159 23 54 0 0 chr11 75243719 75243756 -46600100 + AT_rich Low_complexity Low_complexity 1 37 0 6 1159 1025 122 7 7 chr11 75243766 75243915 -46599941 + B1_Mur4 SINE Alu 2 150 0 6 1159 715 133 8 8 chr11 75243919 75244048 -46599808 + (GGAA)n Simple_repeat Simple_repeat 3 131 0 6 1159 189 0 0 0 chr11 75244050 75244071 -46599785 + (TGAG)n Simple_repeat Simple_repeat 2 22 0 6 1159 966 234 24 0 chr11 75244073 75244278 -46599578 + B3 SINE B2 7 216 0 6 1159 225 0 0 0 chr11 75246458 75246483 -46597373 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1159 218 220 114 48 chr11 75246962 75247067 -46596789 + MIRb SINE MIR 131 242 -26 6 1159 238 263 12 50 chr11 75247090 75247170 -46596686 - B4A SINE B4 0 292 216 6 1159 917 163 0 0 chr11 75247199 75247346 -46596510 - B1_Mur3 SINE Alu -2 147 1 6 1159 379 304 67 0 chr11 75247349 75247404 -46596452 - ID_B1 SINE B4 -3 221 167 6 1159 1476 73 5 15 chr11 75247404 75247599 -46596257 + B2_Mm1a SINE B2 1 193 0 6 1159 379 304 67 0 chr11 75247599 75247678 -46596178 - ID_B1 SINE B4 -58 166 80 6 1159 343 212 25 0 chr11 75247673 75247753 -46596103 - ID_B1 SINE B4 0 224 143 6 1159 894 198 70 20 chr11 75247760 75247961 -46595895 - B3 SINE B2 0 216 6 6 1159 543 262 20 20 chr11 75247960 75248108 -46595748 - ID_B1 SINE B4 -69 155 8 6 1159 451 269 28 0 chr11 75248354 75248462 -46595394 - PB1D10 SINE Alu -6 111 1 6 1159 189 0 0 0 chr11 75248471 75248492 -46595364 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1159 443 262 37 0 chr11 75248854 75248961 -46594895 + PB1D10 SINE Alu 7 117 0 6 1159 266 327 20 10 chr11 75249169 75249271 -46594585 + L2a LINE L2 3323 3425 -1 6 1159 200 325 123 41 chr11 75250650 75250772 -46593084 - MER5A DNA MER1_type -22 167 36 6 1159 1584 36 5 5 chr11 75251135 75251328 -46592528 - B2_Mm1a SINE B2 0 193 1 6 1159 187 327 89 45 chr11 75252175 75252354 -46591502 + MIRb SINE MIR 50 236 -32 6 1159 180 310 172 0 chr11 75253253 75253340 -46590516 - MIRb SINE MIR -79 189 88 6 1159 1263 14 0 0 chr11 75253366 75253511 -46590345 + (CCA)n Simple_repeat Simple_repeat 3 147 0 6 1159 334 256 98 83 chr11 75253836 75253968 -46589888 + ID_B1 SINE B4 86 219 -5 6 1159 1070 213 24 9 chr11 75253977 75254190 -46589666 + B3 SINE B2 1 216 0 6 1159 275 270 78 29 chr11 75254211 75254314 -46589542 + PB1D10 SINE Alu 5 112 -5 6 1159 213 279 66 0 chr11 75254351 75254412 -46589444 + AluF_3 SINE Alu 145 209 -102 6 1159 541 179 80 64 chr11 75255666 75255791 -46588065 + B1_Mur1 SINE Alu 21 147 -2 6 1159 466 236 164 8 chr11 75255824 75255952 -46587904 + B1F2 SINE Alu 2 149 0 6 1159 231 133 0 0 chr11 75255962 75256007 -46587849 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1159 1134 75 7 7 chr11 75256043 75256190 -46587666 + B1_Mus2 SINE Alu 1 147 0 6 1159 596 251 144 5 chr11 75256243 75256431 -46587425 + B3 SINE B2 1 214 -2 6 1159 817 167 7 14 chr11 75256434 75256574 -46587282 + B1F2 SINE Alu 5 143 -6 6 1159 876 147 7 0 chr11 75256602 75256745 -46587111 - B1_Mur3 SINE Alu 0 149 6 6 1159 392 210 39 85 chr11 75256629 75256759 -46587097 - MT2B LTR ERVL -323 278 155 6 1159 22 0 0 0 chr11 75256773 75256795 -46587061 + AT_rich Low_complexity Low_complexity 1 22 0 6 1159 432 251 180 29 chr11 75256865 75257030 -46586826 - B3A SINE B2 -1 215 26 6 1159 181 283 49 16 chr11 75258710 75258771 -46585085 - MIRc SINE MIR -183 85 23 6 1159 254 333 37 19 chr11 75259786 75259893 -46583963 - L2b LINE L2 -20 3355 3247 6 1159 711 219 80 12 chr11 75260171 75260333 -46583523 + MTD LTR MaLR 7 179 -240 6 1159 764 131 8 0 chr11 75260333 75260455 -46583401 + B1_Mur4 SINE Alu 9 131 -19 6 1159 901 195 151 18 chr11 75260459 75260678 -46583178 + MTD LTR MaLR 172 419 0 6 1159 335 117 0 91 chr11 75260758 75260824 -46583032 + B1F1 SINE Alu 1 60 -89 6 1159 984 123 20 0 chr11 75260842 75260988 -46582868 + B1_Mur4 SINE Alu 1 149 -1 6 1159 259 250 48 48 chr11 75261162 75261213 -46582643 + PB1D10 SINE Alu 13 112 0 6 1159 266 163 0 0 chr11 75261213 75261262 -46582594 + ID_B1 SINE B4 174 222 -2 6 1159 246 32 0 0 chr11 75261566 75261597 -46582259 + (GCCTG)n Simple_repeat Simple_repeat 3 33 0 6 1159 181 308 0 0 chr11 75261895 75261947 -46581909 - MIR SINE MIR -127 135 84 6 1159 1098 180 47 24 chr11 75261969 75262180 -46581676 - B3 SINE B2 0 216 1 6 1159 260 341 0 0 chr11 75262188 75262270 -46581586 - ID4 SINE ID 0 83 2 7 1159 661 243 52 0 chr11 75262287 75262423 -46581433 - B1_Mur1 SINE Alu -5 144 2 7 1159 198 0 0 0 chr11 75263451 75263473 -46580383 + (CACCC)n Simple_repeat Simple_repeat 4 25 0 7 1159 1248 41 0 0 chr11 75263668 75263814 -46580042 - B1_Mm SINE Alu 0 147 2 7 1159 329 235 0 36 chr11 75264000 75264084 -46579772 - ID4 SINE ID -2 81 1 7 1159 300 120 0 0 chr11 75268937 75268987 -46574869 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1159 276 194 70 56 chr11 75269043 75269114 -46574742 + B3A SINE B2 8 79 -119 7 1159 1125 83 0 14 chr11 75269152 75269299 -46574557 + B1_Mus1 SINE Alu 3 147 -1 7 1159 1193 55 7 0 chr11 75269315 75269460 -46574396 + B1_Mus2 SINE Alu 1 146 -1 7 1159 645 209 0 0 chr11 75269481 75269591 -46574265 + PB1D9 SINE Alu 3 112 -8 7 1159 1359 115 0 20 chr11 75269698 75269893 -46573963 + B2_Mm2 SINE B2 1 191 -4 7 1159 282 268 14 0 chr11 75270045 75270116 -46573740 - MIRb SINE MIR -13 255 184 7 1159 423 253 109 7 chr11 75270195 75270342 -46573514 - RSINE1 SINE B4 -1 164 3 7 1159 440 165 164 55 chr11 75270435 75270563 -46573293 + B1_Mur2 SINE Alu 8 149 0 7 1159 374 243 0 93 chr11 75270639 75270757 -46573099 + MT2B LTR ERVL 151 257 -344 7 1159 763 153 22 0 chr11 75270663 75270800 -46573056 + B1_Mur3 SINE Alu 9 148 -1 7 1159 513 165 0 0 chr11 75270806 75270903 -46572953 + GA-rich Low_complexity Low_complexity 1 97 0 7 1159 382 176 186 44 chr11 75271049 75271162 -46572694 - B1_Mur2 SINE Alu 0 149 21 7 1159 607 193 0 9 chr11 75271178 75271288 -46572568 + ID_B1 SINE B4 116 224 0 7 1159 1194 41 7 7 chr11 75271295 75271441 -46572415 + B1_Mus2 SINE Alu 2 147 0 7 1159 482 261 110 27 chr11 75271567 75271713 -46572143 + ORR1D2 LTR MaLR 1 158 -212 7 1159 288 0 0 0 chr11 75272090 75272122 -46571734 + (TGG)n Simple_repeat Simple_repeat 2 33 0 7 1159 190 287 78 33 chr11 75272528 75272618 -46571238 - MIRb SINE MIR -44 224 131 7 1159 806 219 102 5 chr11 75272676 75272873 -46570983 + MER20 DNA MER1_type 1 216 -3 7 1159 588 29 0 0 chr11 75277629 75277699 -46566157 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1159 207 186 33 17 chr11 75277765 75277800 -46566056 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 7 1159 1246 41 0 20 chr11 75277800 75277950 -46565906 - B1_Mus1 SINE Alu -1 147 1 7 1159 207 186 33 17 chr11 75277950 75277974 -46565882 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7 1159 1012 210 34 0 chr11 75279217 75279422 -46564434 + ID_B1 SINE B4 3 214 -10 7 1159 186 43 0 0 chr11 75279422 75279445 -46564411 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1159 232 277 81 35 chr11 75279989 75280161 -46563695 + L1ME4a LINE L1 5942 6121 -3 7 1159 284 247 79 45 chr11 75280199 75280288 -46563568 - B3 SINE B2 -124 92 1 7 1159 875 203 43 27 chr11 75280308 75280495 -46563361 - B3A SINE B2 -2 196 7 7 1159 279 114 0 0 chr11 75280608 75280652 -46563204 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1159 30 27 0 0 chr11 75282814 75282851 -46561005 + AT_rich Low_complexity Low_complexity 1 37 0 7 1159 459 0 0 0 chr11 75283510 75283561 -46560295 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1159 3470 15 5 0 chr11 75283599 75284005 -46559851 - MT-int LTR MaLR -74 1024 617 7 1159 469 198 45 36 chr11 75284018 75284120 -46559736 + PB1D10 SINE Alu 1 105 -12 7 1159 207 0 0 0 chr11 75284120 75284143 -46559713 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 7 1159 234 235 56 42 chr11 75284359 75284430 -46559426 + MamRep605 Unknown Unknown 592 663 -213 7 1159 396 0 0 0 chr11 75284575 75284619 -46559237 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1159 1370 89 5 16 chr11 75284641 75284834 -46559022 + B2_Mm1a SINE B2 1 191 -2 7 1159 292 330 58 10 chr11 75284834 75284938 -46558918 - B1F2 SINE Alu -39 110 2 7 1159 482 148 0 80 chr11 75285108 75285196 -46558660 - B1F2 SINE Alu -67 82 2 7 1159 415 299 16 49 chr11 75285196 75285296 -46558560 + RSINE1 SINE B4 53 148 -17 7 1159 422 261 16 63 chr11 75285196 75285227 -46558629 - B4 SINE B4 -116 154 56 7 1159 22 56 0 0 chr11 75285312 75285348 -46558508 + AT_rich Low_complexity Low_complexity 1 36 0 7 1159 243 250 0 55 chr11 75285439 75285494 -46558362 + RSINE1 SINE B4 114 165 0 7 1159 1138 88 0 0 chr11 75285510 75285657 -46558199 + B1_Mus2 SINE Alu 1 147 0 7 1159 622 229 41 0 chr11 75285678 75285800 -46558056 - B1_Mur4 SINE Alu -23 127 1 7 1159 219 88 0 0 chr11 75285811 75285845 -46558011 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1159 509 157 157 0 chr11 75285877 75285979 -46557877 + B1_Mus2 SINE Alu 29 146 -1 7 1159 300 330 115 35 chr11 75285996 75286109 -46557747 + ID_B1 SINE B4 82 203 -21 7 1159 641 236 24 0 chr11 75286644 75286767 -46557089 - B1_Mur2 SINE Alu -23 126 1 7 1159 958 235 9 27 chr11 75286777 75286996 -46556860 - B3 SINE B2 -1 215 1 7 1159 351 312 76 48 chr11 75287299 75287444 -46556412 - Charlie16a DNA MER1_type -67 275 127 7 1159 31 88 0 0 chr11 75287458 75287538 -46556318 + AT_rich Low_complexity Low_complexity 1 80 0 7 1159 618 321 35 38 chr11 75287890 75287943 -46555913 - L1MA5 LINE L1 -369 5931 5883 7 1159 5329 93 25 6 chr11 75287943 75288666 -46555190 + RMER19A LTR ERVK 1 737 0 7 1159 618 321 35 38 chr11 75288666 75288926 -46554930 - L1MA5 LINE L1 -418 5882 5619 7 1159 1164 61 0 0 chr11 75288926 75289073 -46554783 + B2_Mm2 SINE B2 2 148 -47 7 1159 444 45 15 0 chr11 75289117 75289183 -46554673 + B2_Mm1a SINE B2 127 193 0 7 1159 788 207 35 15 chr11 75289210 75289411 -46554445 - L1_Mur3 LINE L1 -331 5549 5345 7 1159 180 0 0 0 chr11 75289417 75289437 -46554419 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 7 1159 1229 76 0 0 chr11 75289438 75289595 -46554261 - B2_Mm2 SINE B2 -37 158 2 7 1159 577 306 72 25 chr11 75289616 75290018 -46553838 - L1MA5 LINE L1 -746 5397 4977 7 1159 279 0 0 0 chr11 75290954 75290985 -46552871 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1159 1074 108 0 0 chr11 75290985 75291124 -46552732 - B1_Mus1 SINE Alu -9 139 1 7 1159 789 109 306 0 chr11 75291135 75291157 -46552699 - B2_Mm2 SINE B2 -2 193 163 7 1159 297 0 0 0 chr11 75291157 75291190 -46552666 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 7 1159 789 109 306 0 chr11 75291190 75291314 -46552542 - B2_Mm2 SINE B2 -33 162 3 7 1159 490 67 27 0 chr11 75291431 75291506 -46552350 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 7 1159 743 244 26 58 chr11 75291670 75291856 -46552000 + ID_B1 SINE B4 2 181 -43 7 1159 531 205 130 30 chr11 75291856 75291987 -46551869 + B1_Mur2 SINE Alu 1 144 -5 7 1159 1468 58 0 26 chr11 75292060 75292253 -46551603 + B2_Mm2 SINE B2 1 188 -7 7 1159 1400 59 18 0 chr11 75292253 75292422 -46551434 - B2_Mm2 SINE B2 -19 176 5 7 1159 455 0 18 0 chr11 75292422 75292477 -46551379 + (CCA)n Simple_repeat Simple_repeat 2 57 0 7 1159 649 270 20 0 chr11 75292975 75293123 -46550733 - RSINE1 SINE B4 -12 153 3 7 1159 281 198 141 65 chr11 75293469 75293561 -46550295 - BC1_Mm scRNA scRNA -48 104 6 7 1159 289 169 220 0 chr11 75293503 75293562 -46550294 - ID SINE ID -148 76 5 7 1159 292 271 134 37 chr11 75293606 75293740 -46550116 - B3 SINE B2 0 216 70 7 1159 537 284 6 36 chr11 75293830 75293998 -46549858 + RSINE1 SINE B4 3 165 0 7 1159 1916 185 90 15 chr11 75294159 75294548 -46549308 - MTD LTR MaLR -1 418 1 7 1159 318 246 26 17 chr11 75294549 75294665 -46549191 + L1MB7 LINE L1 4918 5034 -1112 7 1159 637 90 0 20 chr11 75294669 75294771 -46549085 + B2_Mm1a SINE B2 87 186 -7 7 1159 1644 37 0 0 chr11 75294785 75294975 -46548881 + B2_Mm1a SINE B2 3 192 -1 7 1159 240 273 182 0 chr11 75295011 75295077 -46548779 + ID4 SINE ID 2 79 -4 7 1159 289 318 22 22 chr11 75295239 75295374 -46548482 + B1F1 SINE Alu 1 135 -14 7 1159 882 186 141 0 chr11 75295388 75295542 -46548314 + B3 SINE B2 7 179 -37 7 1159 225 94 0 0 chr11 75295542 75295574 -46548282 + (CATA)n Simple_repeat Simple_repeat 3 34 0 7 1159 882 204 74 56 chr11 75295574 75295619 -46548237 + B3 SINE B2 148 207 -9 7 1159 1196 68 0 7 chr11 75295619 75295767 -46548089 + B1_Mus2 SINE Alu 1 147 0 7 1159 268 248 27 98 chr11 75295797 75295843 -46548013 + ID_B1 SINE B4 121 224 0 7 1159 517 61 0 0 chr11 75295843 75295909 -46547947 + B1_Mus2 SINE Alu 82 147 0 7 1159 207 0 0 0 chr11 75295913 75295936 -46547920 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1159 730 193 160 0 chr11 75295943 75296093 -46547763 + B3 SINE B2 39 212 -4 7 1159 280 195 23 58 chr11 75296162 75296249 -46547607 + L1M4 LINE L1 4936 5019 -1127 7 1159 295 146 0 59 chr11 75296253 75296304 -46547552 + ID4_ SINE ID 35 82 -1 7 1159 663 321 82 56 chr11 75296342 75296602 -46547254 + ID_B1 SINE B4 6 270 -22 7 1159 849 214 54 0 chr11 75296905 75297073 -46546783 - B3 SINE B2 -4 212 36 7 1159 1242 73 82 22 chr11 75297075 75297257 -46546599 + B2_Mm2 SINE B2 2 194 -1 7 1159 484 258 103 15 chr11 75297361 75297626 -46546230 + L1MB7 LINE L1 5833 6135 -49 7 1159 195 100 0 0 chr11 75297745 75297775 -46546081 + (TAA)n Simple_repeat Simple_repeat 2 31 0 7 1159 1169 61 0 13 chr11 75297782 75297932 -46545924 + B2_Mm2 SINE B2 1 148 -47 7 1159 212 253 76 0 chr11 75298055 75298134 -46545722 + CT-rich Low_complexity Low_complexity 5 89 0 7 1159 245 213 213 0 chr11 75298135 75298196 -46545660 - PB1D10 SINE Alu -15 102 29 8 1159 777 22 0 0 chr11 75298281 75298372 -46545484 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 8 1159 980 71 55 0 chr11 75298374 75298501 -46545355 - B1_Mus1 SINE Alu -13 135 2 8 1159 562 181 93 43 chr11 75298903 75299042 -46544814 - B1_Mur2 SINE Alu -2 147 2 8 1159 846 242 67 0 chr11 75299219 75299397 -46544459 + B3 SINE B2 7 196 -20 8 1159 252 0 0 0 chr11 75299402 75299430 -46544426 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1159 865 234 35 15 chr11 75299490 75299690 -46544166 - B3 SINE B2 -8 208 5 8 1159 578 243 14 21 chr11 75301399 75301542 -46542314 - B1_Mur3 SINE Alu -6 143 2 8 1159 1470 88 16 0 chr11 75301920 75302112 -46541744 - B2_Mm2 SINE B2 0 195 1 8 1159 1089 111 0 0 chr11 75302165 75302309 -46541547 + B1_Mus1 SINE Alu 1 144 -4 8 1159 621 199 79 29 chr11 75302396 75302536 -46541320 + B1_Mus1 SINE Alu 2 148 0 8 1159 384 324 9 9 chr11 75302560 75302672 -46541184 + PB1D10 SINE Alu 4 115 -2 8 1159 583 219 147 8 chr11 75302672 75302801 -46541055 + B1_Mur1 SINE Alu 1 147 -2 8 1159 243 0 0 0 chr11 75302869 75302896 -46540960 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1159 240 350 40 40 chr11 75304580 75304681 -46539175 - B1F SINE Alu -28 121 21 8 1159 529 217 85 0 chr11 75307151 75307280 -46536576 - B1_Mur1 SINE Alu -7 142 3 8 1159 874 151 13 20 chr11 75308447 75308596 -46535260 + B1_Mur4 SINE Alu 2 149 -1 8 1159 285 29 0 0 chr11 75308614 75308648 -46535208 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 8 1159 472 267 64 106 chr11 75310167 75310315 -46533541 - B4 SINE B4 -67 225 92 8 1159 180 0 0 0 chr11 75310315 75310335 -46533521 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 8 1159 472 267 64 106 chr11 75310335 75310421 -46533435 - B4 SINE B4 -201 91 1 8 1159 492 202 143 16 chr11 75311507 75311633 -46532223 - B1_Mus1 SINE Alu -5 143 2 8 1159 219 259 159 47 chr11 75311769 75311939 -46531917 - L2 LINE L2 -1329 2090 1902 8 1159 285 228 0 73 chr11 75312007 75312101 -46531755 + T-rich Low_complexity Low_complexity 15 101 0 8 1159 1139 82 14 0 chr11 75312101 75312247 -46531609 - B1_Mus1 SINE Alu 0 148 1 8 1159 285 228 0 73 chr11 75312247 75312261 -46531595 + T-rich Low_complexity Low_complexity 1 14 0 8 1159 246 32 0 0 chr11 75312360 75312391 -46531465 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 1159 313 203 155 99 chr11 75312391 75312526 -46531330 - B4A SINE B4 -22 270 127 8 1159 218 298 0 87 chr11 75312616 75312719 -46531137 + MIR SINE MIR 98 191 -77 8 1159 395 242 69 29 chr11 75312848 75312950 -46530906 - PB1D10 SINE Alu -1 116 11 8 1159 350 198 224 0 chr11 75315023 75315139 -46528717 - B1_Mur2 SINE Alu -7 142 1 8 1159 1041 83 20 14 chr11 75315715 75315862 -46527994 - B1_Mur4 SINE Alu -2 148 1 8 1159 931 186 0 0 chr11 75316244 75316389 -46527467 - B1_Mur1 SINE Alu 0 149 5 8 1159 233 29 29 0 chr11 75316411 75316445 -46527411 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1159 1157 65 0 0 chr11 75316445 75316584 -46527272 - B1_Mus1 SINE Alu -9 139 1 8 1159 1232 34 7 0 chr11 75317408 75317554 -46526302 - B1_Mm SINE Alu 0 147 1 8 1159 361 250 0 0 chr11 75317554 75317630 -46526226 + B1_Mur1 SINE Alu 73 148 -1 8 1159 542 207 113 24 chr11 75317659 75317783 -46526073 - B3A SINE B2 -50 148 14 8 1159 1083 72 0 0 chr11 75318903 75319041 -46524815 + B1_Mus2 SINE Alu 10 147 0 8 1159 261 83 0 0 chr11 75319041 75319077 -46524779 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1159 316 314 58 10 chr11 75319186 75319289 -46524567 - PB1D7 SINE Alu -8 112 5 8 1159 229 295 154 0 chr11 75319464 75319542 -46524314 + RSINE1 SINE B4 58 147 -18 8 1159 725 50 10 10 chr11 75319600 75319702 -46524154 + B2_Mm1a SINE B2 92 193 0 8 1159 456 136 0 0 chr11 75320399 75320472 -46523384 + (T)n Simple_repeat Simple_repeat 1 73 0 8 1159 1198 82 0 0 chr11 75320472 75320619 -46523237 - B1_Mus2 SINE Alu 0 147 1 8 1159 456 136 0 0 chr11 75320619 75320626 -46523230 + (T)n Simple_repeat Simple_repeat 1 7 0 8 1159 512 175 0 73 chr11 75320677 75320800 -46523056 + B2_Mm2 SINE B2 76 189 -6 8 1159 615 129 0 0 chr11 75320818 75320903 -46522953 + B1_Mur2 SINE Alu 60 144 -5 8 1159 222 62 0 0 chr11 75320903 75320935 -46522921 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 1159 1384 76 16 0 chr11 75320935 75321120 -46522736 + B2_Mm2 SINE B2 8 195 0 8 1159 486 248 27 41 chr11 75321217 75321364 -46522492 + RSINE1 SINE B4 2 146 -19 8 1159 1174 62 14 0 chr11 75321388 75321533 -46522323 - B1_Mus2 SINE Alu 0 147 1 8 1159 747 201 256 0 chr11 75321541 75321705 -46522151 - B3 SINE B2 -10 206 1 8 1159 195 238 146 56 chr11 75324995 75325084 -46518772 - MIRm SINE MIR -18 258 162 8 1159 198 0 0 0 chr11 75326594 75326616 -46517240 + (CCTG)n Simple_repeat Simple_repeat 2 23 0 8 1159 1245 41 0 7 chr11 75329234 75329380 -46514476 + B1_Mm SINE Alu 1 145 -2 8 1159 459 52 0 0 chr11 75329380 75329438 -46514418 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 8 1159 208 57 0 125 chr11 75329695 75329717 -46514139 + T-rich Low_complexity Low_complexity 18 35 0 8 1159 1265 28 0 0 chr11 75329717 75329858 -46513998 - B1_Mus2 SINE Alu -6 141 1 8 1159 208 57 0 125 chr11 75329858 75329875 -46513981 + T-rich Low_complexity Low_complexity 1 17 0 8 1159 698 226 36 7 chr11 75329875 75330013 -46513843 + B1_Mur2 SINE Alu 3 144 -5 8 1159 261 150 0 49 chr11 75330047 75330117 -46513739 + PB1D7 SINE Alu 22 84 -65 8 1159 280 123 318 15 chr11 75330247 75330313 -46513543 + ID_B1 SINE B4 125 210 -14 8 1159 351 266 0 0 chr11 75330366 75330445 -46513411 + ID4 SINE ID 1 79 -4 8 1159 186 43 0 0 chr11 75330558 75330581 -46513275 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1159 1159 78 7 0 chr11 75330582 75330736 -46513120 - B2_Mm1a SINE B2 -38 155 1 8 1159 263 225 47 59 chr11 75330783 75330801 -46513055 - PB1D7 SINE Alu 0 120 37 8 1159 315 179 30 0 chr11 75330801 75330868 -46512988 - ID_B1 SINE B4 -38 186 118 8 1159 511 236 154 0 chr11 75330919 75331042 -46512814 - B1F SINE Alu -7 142 1 8 1159 395 300 0 32 chr11 75331103 75331227 -46512629 - PB1D9 SINE Alu 0 120 1 8 1159 25 31 0 0 chr11 75331395 75331427 -46512429 + AT_rich Low_complexity Low_complexity 1 32 0 8 1159 810 279 51 47 chr11 75331429 75331588 -46512268 - B3 SINE B2 -1 215 55 8 1159 1326 148 0 78 chr11 75331588 75331772 -46512084 - URR1A DNA MER1_type -3 223 46 8 1159 1182 62 0 7 chr11 75331772 75331919 -46511937 + B1_Mm SINE Alu 1 146 -1 8 1159 961 101 25 0 chr11 75331924 75332083 -46511773 + (GAAAA)n Simple_repeat Simple_repeat 4 166 0 8 1159 1326 148 0 78 chr11 75332083 75332134 -46511722 - URR1A DNA MER1_type -181 45 1 8 1159 810 279 51 47 chr11 75332134 75332188 -46511668 - B3 SINE B2 -162 54 1 8 1159 435 196 30 158 chr11 75332192 75332325 -46511531 - PB1D9 SINE Alu -3 117 2 8 1159 1593 42 16 0 chr11 75332354 75332544 -46511312 + B2_Mm2 SINE B2 3 195 0 8 1159 1114 89 7 0 chr11 75332545 75332691 -46511165 + B1_Mus2 SINE Alu 1 147 0 8 1159 230 73 0 24 chr11 75332691 75332733 -46511123 + (CAAAC)n Simple_repeat Simple_repeat 4 44 0 8 1159 1052 215 5 9 chr11 75332760 75332971 -46510885 + B3 SINE B2 3 212 -4 8 1159 198 143 0 0 chr11 75332971 75333006 -46510850 + (GGA)n Simple_repeat Simple_repeat 1 35 0 8 1159 305 321 0 0 chr11 75333107 75333191 -46510665 - PB1 SINE Alu -11 116 33 8 1159 1236 48 7 0 chr11 75333214 75333360 -46510496 - B1_Mus1 SINE Alu 0 148 2 8 1159 184 292 30 15 chr11 75333594 75333660 -46510196 - MIR3 SINE MIR -23 185 119 8 1159 24 0 0 0 chr11 75334758 75334782 -46509074 + AT_rich Low_complexity Low_complexity 1 24 0 8 1159 363 44 0 0 chr11 75334783 75334828 -46509028 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 8 1159 1043 58 0 0 chr11 75334842 75334979 -46508877 - B2_Mm2 SINE B2 -58 137 1 8 1159 290 216 17 6 chr11 75336350 75336424 -46507432 - ID4 SINE ID -65 87 15 8 1159 322 302 9 28 chr11 75336442 75336551 -46507305 - PB1D10 SINE Alu -1 116 10 8 1159 815 106 0 72 chr11 75336902 75337054 -46506802 - URR1B DNA MER1_type 0 225 85 8 1159 378 256 132 66 chr11 75337054 75337092 -46506764 + CYRA11_Mm Unknown Y-chromosome 193 374 -243 8 1159 206 352 76 0 chr11 75337672 75337777 -46506079 - L2a LINE L2 -5 3421 3309 8 1159 847 189 0 45 chr11 75337803 75337958 -46505898 + B1_Mur2 SINE Alu 2 149 0 8 1159 222 37 0 0 chr11 75337958 75337985 -46505871 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 8 1159 357 295 37 43 chr11 75338035 75338198 -46505658 - RMER15 LTR ERVL -7 568 407 8 1159 24 53 0 0 chr11 75340061 75340099 -46503757 + AT_rich Low_complexity Low_complexity 1 38 0 8 1159 217 337 79 0 chr11 75340108 75340197 -46503659 - RSINE1 SINE B4 -17 148 53 8 1159 522 274 140 16 chr11 75340235 75340428 -46503428 - ID_B1 SINE B4 -6 218 2 8 1159 569 219 241 12 chr11 75340506 75340672 -46503184 + B3 SINE B2 5 208 -8 8 1159 1047 101 7 26 chr11 75340822 75340974 -46502882 + B1_Mur4 SINE Alu 2 150 0 8 1159 1620 37 16 0 chr11 75341110 75341298 -46502558 + B2_Mm1a SINE B2 1 191 -2 8 1159 1179 55 7 0 chr11 75341306 75341452 -46502404 + B1_Mus1 SINE Alu 2 148 0 9 1159 491 277 15 8 chr11 75341539 75341670 -46502186 - B1F SINE Alu -1 148 17 9 1159 697 154 28 188 chr11 75341727 75341823 -46502033 + B1_Mus1 SINE Alu 1 101 -47 9 1159 1302 104 49 11 chr11 75341823 75342008 -46501848 + B2_Mm2 SINE B2 2 193 -2 9 1159 697 154 28 188 chr11 75342008 75342087 -46501769 + B1_Mus1 SINE Alu 102 148 0 9 1159 203 138 0 0 chr11 75342088 75342117 -46501739 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 9 1159 425 180 188 51 chr11 75342138 75342255 -46501601 - B1_Mur1 SINE Alu -16 133 1 9 1159 231 255 0 0 chr11 75342339 75342386 -46501470 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 1159 1547 48 38 0 chr11 75342589 75342775 -46501081 + B2_Mm2 SINE B2 2 194 -1 9 1159 270 323 104 15 chr11 75342840 75342975 -46500881 + MIRb SINE MIR 98 244 -24 9 1159 447 141 3 22 chr11 75343645 75343742 -46500114 + B1_Mur2 SINE Alu 20 139 -10 9 1159 280 307 37 21 chr11 75346386 75346515 -46497341 - MIR SINE MIR -41 227 90 9 1159 207 0 0 0 chr11 75346607 75346630 -46497226 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1159 394 319 0 16 chr11 75347275 75347396 -46496460 - RSINE1 SINE B4 -36 129 11 9 1159 776 207 20 20 chr11 75347418 75347566 -46496290 - B1_Mus1 SINE Alu 0 148 1 9 1159 1144 75 0 20 chr11 75347574 75347723 -46496133 - B1_Mus1 SINE Alu -2 146 1 9 1159 378 325 18 0 chr11 75347757 75347871 -46495985 - PB1D10 SINE Alu 0 117 2 9 1159 424 117 13 13 chr11 75348377 75348455 -46495401 + (TTCTC)n Simple_repeat Simple_repeat 2 79 0 9 1159 180 0 0 0 chr11 75349438 75349458 -46494398 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1159 342 219 9 29 chr11 75349475 75349583 -46494273 - B1_Mur1 SINE Alu -2 147 18 9 1159 1275 41 0 0 chr11 75349673 75349820 -46494036 - B1_Mus1 SINE Alu 0 148 2 9 1159 299 325 71 111 chr11 75350223 75350308 -46493548 - B4A SINE B4 -6 286 120 9 1159 654 111 94 0 chr11 75350308 75350425 -46493431 - B1_Mur3 SINE Alu -13 136 9 9 1159 299 325 71 111 chr11 75350425 75350448 -46493408 - B4A SINE B4 -6 119 71 9 1159 261 196 1044 11 chr11 75350450 75350541 -46493315 - B4A SINE B4 -68 224 178 9 1159 230 200 0 39 chr11 75350602 75350654 -46493202 - B1_Mur2 SINE Alu -19 130 81 9 1159 387 207 109 42 chr11 75350633 75350770 -46493086 - B1F SINE Alu -19 130 12 9 1159 275 254 90 224 chr11 75350674 75350827 -46493029 - ID_B1 SINE B4 -26 198 6 9 1159 306 243 100 0 chr11 75350827 75350897 -46492959 - ID4_ SINE ID -1 82 6 9 1159 729 248 6 69 chr11 75352698 75352871 -46490985 - RSINE1 SINE B4 -1 164 3 9 1159 916 255 9 23 chr11 75352887 75353104 -46490752 - B3 SINE B2 -1 215 2 9 1159 1652 37 5 0 chr11 75353230 75353421 -46490435 + B2_Mm1t SINE B2 1 192 -1 9 1159 993 136 0 20 chr11 75353430 75353580 -46490276 + B1_Mus2 SINE Alu 1 147 0 9 1159 287 269 0 25 chr11 75355137 75355217 -46488639 + ID4_ SINE ID 4 81 -2 9 1159 351 226 159 7 chr11 75355488 75355591 -46488265 - B1_Mur4 SINE Alu -27 120 2 9 1159 253 95 24 0 chr11 75355604 75355646 -46488210 - PB1D7 SINE Alu -6 114 72 9 1159 574 337 0 51 chr11 75355683 75355861 -46487995 - B4 SINE B4 0 292 124 9 1159 697 128 26 0 chr11 75355903 75356020 -46487836 - B1_Mus2 SINE Alu -5 142 23 9 1159 302 307 53 73 chr11 75356020 75356050 -46487806 - B4 SINE B4 -67 221 78 9 1159 583 272 68 0 chr11 75356058 75356205 -46487651 - RSINE1 SINE B4 -1 164 8 9 1159 390 252 40 0 chr11 75356222 75356321 -46487535 - ID_B1 SINE B4 -8 216 114 9 1159 634 243 7 7 chr11 75357106 75357247 -46486609 + RSINE1 SINE B4 12 152 -13 9 1159 451 174 9 9 chr11 75357403 75357519 -46486337 + (TG)n Simple_repeat Simple_repeat 2 117 0 9 1159 23 25 0 24 chr11 75357637 75357649 -46486207 + AT_rich Low_complexity Low_complexity 1 12 0 9 1159 397 218 26 0 chr11 75357649 75357727 -46486129 + ID2 SINE ID 3 82 -1 9 1159 23 25 0 24 chr11 75357727 75357755 -46486101 + AT_rich Low_complexity Low_complexity 1 28 0 9 1159 674 148 160 23 chr11 75357764 75357895 -46485961 - B1_Mur4 SINE Alu 0 150 2 9 1159 325 293 0 0 chr11 75357926 75358001 -46485855 + ID4 SINE ID 1 75 -8 9 1159 226 210 46 46 chr11 75358653 75358718 -46485138 - ID4_ SINE ID -15 68 4 9 1159 328 205 71 12 chr11 75358740 75358824 -46485032 - B1F SINE Alu -60 89 1 9 1159 407 291 12 65 chr11 75360395 75360564 -46483292 + MamRep564 Unknown Unknown 74 233 -124 9 1159 285 211 68 27 chr11 75360718 75360791 -46483065 + ID4_ SINE ID 2 77 -6 9 1159 481 287 0 0 chr11 75360807 75360915 -46482941 + PB1D7 SINE Alu 1 108 -12 9 1159 270 241 157 0 chr11 75360924 75361032 -46482824 + LTR81B LTR ERV1? 379 503 -890 9 1159 269 266 31 0 chr11 75361053 75361117 -46482739 + ID_B1 SINE B4 156 221 -3 9 1159 874 141 41 27 chr11 75361173 75361319 -46482537 + B1_Mus1 SINE Alu 1 148 0 9 1159 186 71 0 0 chr11 75361322 75361350 -46482506 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 1159 343 360 81 63 chr11 75361474 75361806 -46482050 - L1MC4a LINE L1 -2033 5849 5512 9 1159 285 29 0 0 chr11 75361989 75362023 -46481833 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1159 1185 68 0 0 chr11 75362053 75362200 -46481656 - B1_Mus1 SINE Alu 0 148 2 9 1159 520 221 81 8 chr11 75362276 75362399 -46481457 - B1_Mur1 SINE Alu 0 149 18 9 1159 305 295 11 0 chr11 75362515 75362610 -46481246 - ID_B1 SINE B4 -29 195 100 9 1159 221 250 141 0 chr11 75362534 75362626 -46481230 - PB1 SINE Alu -21 106 2 9 1159 405 0 0 0 chr11 75362903 75362948 -46480908 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1159 701 315 19 14 chr11 75363071 75363287 -46480569 + MER58A DNA MER1_type 3 219 -5 9 144 330 176 204 56 chr11 75366293 75366401 -46477455 - ID_B1 SINE B4 -20 204 81 9 1160 290 284 100 9 chr11 75366867 75366977 -46476879 - PB1 SINE Alu -7 120 1 9 1160 701 44 0 0 chr11 75367009 75367100 -46476756 - B1_Mm SINE Alu 0 147 57 9 1160 561 133 310 0 chr11 75367116 75367229 -46476627 + B1_Mus1 SINE Alu 1 148 0 9 1160 27 29 0 0 chr11 75367298 75367332 -46476524 + AT_rich Low_complexity Low_complexity 1 34 0 9 1160 257 311 27 0 chr11 75367436 75367510 -46476346 - BC1_Mm scRNA scRNA -74 78 3 9 1160 264 183 80 22 chr11 75367901 75367994 -46475862 + PB1D10 SINE Alu 1 100 -49 9 1160 1213 61 0 0 chr11 75367994 75368141 -46475715 - B1_Mus1 SINE Alu 0 148 2 9 1160 240 220 211 42 chr11 75368141 75368181 -46475675 + B1F1 SINE Alu 101 148 -1 9 1160 459 303 13 27 chr11 75368183 75368332 -46475524 + B1F1 SINE Alu 1 147 -2 9 1160 244 329 0 0 chr11 75368336 75368409 -46475447 + ID4 SINE ID 3 75 -8 9 1160 457 233 127 17 chr11 75368607 75368725 -46475131 + ID_B1 SINE B4 92 222 -2 9 1160 1543 43 26 16 chr11 75368728 75368917 -46474939 + B2_Mm1t SINE B2 2 192 -1 9 1160 1068 161 85 0 chr11 75368926 75369125 -46474731 + B3 SINE B2 1 216 0 9 1160 495 211 27 27 chr11 75369136 75369248 -46474608 + PB1D9 SINE Alu 9 120 0 9 1160 449 287 10 0 chr11 75369273 75369374 -46474482 + PB1 SINE Alu 1 102 -25 9 1160 464 281 122 50 chr11 75369380 75369411 -46474445 - B3A SINE B2 -2 196 166 9 1160 306 0 0 0 chr11 75369411 75369445 -46474411 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 9 1160 1008 88 61 0 chr11 75369445 75369593 -46474263 - B2_Mm1t SINE B2 -33 160 4 9 1160 1043 101 53 116 chr11 75369616 75369769 -46474087 + B2_Mm1t SINE B2 2 144 -49 9 1160 234 0 0 0 chr11 75369769 75369795 -46474061 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1160 1165 36 43 0 chr11 75369795 75369935 -46473921 - B1_Mus1 SINE Alu -2 146 1 9 1160 1043 101 53 116 chr11 75369935 75369970 -46473886 + B2_Mm1t SINE B2 145 178 -15 9 1160 450 108 316 26 chr11 75370017 75370131 -46473725 + B2_Mm2 SINE B2 47 193 -2 9 1160 571 274 0 0 chr11 75370154 75370271 -46473585 + RSINE1 SINE B4 3 119 -46 9 1160 295 254 8 98 chr11 75370469 75370591 -46473265 + PB1D10 SINE Alu 2 112 -5 9 1160 488 268 162 8 chr11 75371460 75371701 -46472155 - L1MB7 LINE L1 -13 6171 5894 9 1160 673 172 82 0 chr11 75371714 75371848 -46472008 - B3 SINE B2 -6 210 66 9 1160 899 241 164 18 chr11 75371866 75372263 -46471593 - L1MB8 LINE L1 -274 5904 5450 9 1160 564 205 12 96 chr11 75372282 75372449 -46471407 - RSINE1 SINE B4 0 165 13 9 1160 195 42 0 0 chr11 75372458 75372482 -46471374 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 9 1160 716 226 0 0 chr11 75372486 75372619 -46471237 - B1_Mur2 SINE Alu -6 143 11 9 1160 447 172 138 11 chr11 75372634 75372728 -46471128 - B1F2 SINE Alu -1 148 43 9 1160 269 200 0 52 chr11 75372677 75372735 -46471121 - 4.5SRNA scRNA scRNA -6 88 34 9 1160 974 109 0 0 chr11 75373185 75373313 -46470543 - B1_Mus2 SINE Alu -18 129 2 9 1160 562 258 124 36 chr11 75373328 75373521 -46470335 - B3 SINE B2 -5 211 2 9 1160 598 247 100 12 chr11 75374204 75374364 -46469492 - RMER30 DNA MER1_type -27 175 2 9 1160 277 238 0 35 chr11 75375254 75375341 -46468515 + PB1D10 SINE Alu 1 84 -33 9 1160 1148 88 0 0 chr11 75375454 75375602 -46468254 + B1_Mus1 SINE Alu 1 148 0 9 1160 468 167 35 5 chr11 75375862 75375970 -46467886 + PB1D10 SINE Alu 1 109 -8 1 1160 393 22 0 0 chr11 75377226 75377272 -46466584 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1160 1003 102 20 26 chr11 75378288 75378439 -46465417 - B1_Mur4 SINE Alu 0 150 1 1 1160 335 333 50 0 chr11 75378538 75378658 -46465198 + ID_B1 SINE B4 71 196 -28 1 1160 212 323 31 0 chr11 75378702 75378767 -46465089 - PB1 SINE Alu -58 69 3 1 1160 266 0 0 29 chr11 75378776 75378811 -46465045 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1160 296 286 44 0 chr11 75378820 75378911 -46464945 - B1F SINE Alu -30 119 25 1 1160 770 124 0 44 chr11 75379050 75379185 -46464671 + B1_Mur3 SINE Alu 21 149 0 1 1160 249 270 35 106 chr11 75379061 75379202 -46464654 + B4A SINE B4 116 246 -46 1 1160 379 272 19 10 chr11 75379211 75379315 -46464541 + PB1D10 SINE Alu 13 117 0 1 1160 318 305 19 9 chr11 75381039 75381145 -46462711 - MIRb SINE MIR -28 240 134 1 1160 210 224 0 0 chr11 75381587 75381636 -46462220 + G-rich Low_complexity Low_complexity 1 49 0 1 1160 523 198 75 0 chr11 75382421 75382527 -46461329 - PB1D7 SINE Alu 0 120 7 1 1160 244 352 15 66 chr11 75382461 75382598 -46461258 - B4 SINE B4 -138 154 25 1 1160 649 107 89 0 chr11 75383173 75383285 -46460571 + B1F2 SINE Alu 28 149 0 1 1160 614 293 86 6 chr11 75383300 75383475 -46460381 - B3 SINE B2 -27 189 1 1 1160 550 234 165 18 chr11 75383504 75383677 -46460179 + B3 SINE B2 1 179 -37 1 1160 807 197 7 0 chr11 75383750 75383897 -46459959 + B1_Mur2 SINE Alu 2 149 0 1 1160 216 191 24 0 chr11 75386879 75386921 -46456935 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1160 471 212 186 0 chr11 75387384 75387497 -46456359 + B1_Mur2 SINE Alu 1 134 -15 1 1160 226 291 0 0 chr11 75387887 75387942 -46455914 + tRNA-Ala-GCG tRNA tRNA 8 62 -13 1 1160 496 209 0 28 chr11 75388105 75388213 -46455643 + B1F2 SINE Alu 45 149 0 1 1160 629 257 187 0 chr11 75388459 75388646 -46455210 + ID_B1 SINE B4 3 224 0 1 1160 330 26 0 0 chr11 75389821 75389860 -46453996 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1160 306 0 0 0 chr11 75389860 75389893 -46453963 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1160 414 0 0 0 chr11 75390653 75390699 -46453157 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1160 351 0 0 0 chr11 75390699 75390737 -46453119 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1160 347 288 54 9 chr11 75390958 75391070 -46452786 + L2b LINE L2 3257 3373 -2 1 1160 360 282 22 58 chr11 75391404 75391543 -46452313 - MER102b DNA MER1_type -112 229 96 1 1160 189 0 0 0 chr11 75391685 75391706 -46452150 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1160 1331 109 16 10 chr11 75391717 75391911 -46451945 - B2_Mm2 SINE B2 0 195 1 1 1160 332 221 52 0 chr11 75392146 75392223 -46451633 - ID4 SINE ID 0 83 3 1 1160 248 327 43 34 chr11 75392241 75392358 -46451498 + L2b LINE L2 3238 3355 -20 1 1160 422 214 76 59 chr11 75392387 75392506 -46451350 + PB1 SINE Alu 1 121 -6 1 1160 312 27 0 0 chr11 75392949 75392986 -46450870 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1160 863 227 0 100 chr11 75393020 75393240 -46450616 + B3A SINE B2 1 198 0 1 1160 1449 71 11 0 chr11 75393241 75393425 -46450431 - B2_Mm1t SINE B2 -6 187 2 1 1160 462 269 70 97 chr11 75393433 75393618 -46450238 - B3A SINE B2 -9 207 28 1 1160 897 227 50 5 chr11 75393621 75393820 -46450036 + B3 SINE B2 5 212 -4 1 1160 241 275 248 8 chr11 75393890 75394011 -46449845 - MIR SINE MIR -83 179 30 1 1160 824 239 13 114 chr11 75394145 75394301 -46449555 + ID_B1 SINE B4 1 148 -76 1 1160 1346 95 16 5 chr11 75394301 75394492 -46449364 + B2_Mm2 SINE B2 3 195 0 1 1160 824 239 13 114 chr11 75394492 75394562 -46449294 + ID_B1 SINE B4 149 204 -20 1 1160 1085 59 81 0 chr11 75394708 75394844 -46449012 + B1_Mus1 SINE Alu 2 148 0 1 1160 259 263 181 17 chr11 75394877 75394993 -46448863 + B1F SINE Alu 1 135 -14 1 1160 920 174 0 20 chr11 75394995 75395147 -46448709 + B1_Mur4 SINE Alu 2 150 0 1 1160 1051 222 18 32 chr11 75395216 75395435 -46448421 - B3 SINE B2 0 216 1 1 1160 532 154 21 21 chr11 75395437 75395530 -46448326 + B1_Mur1 SINE Alu 14 106 -43 1 1160 1177 82 0 0 chr11 75395531 75395677 -46448179 + B1_Mus2 SINE Alu 2 147 0 1 1160 375 96 0 0 chr11 75395805 75395857 -46447999 + B1_Mm SINE Alu 95 146 -1 1 1160 1378 89 6 6 chr11 75395861 75396042 -46447814 + B2_Mm2 SINE B2 1 181 -14 1 1160 1137 49 21 0 chr11 75396056 75396200 -46447656 - B1_Mus2 SINE Alu 0 147 1 1 1160 235 294 0 0 chr11 75396286 75396337 -46447519 + polypurine Low_complexity Low_complexity 2 52 0 1 1160 628 303 32 0 chr11 75396343 75396498 -46447358 + RSINE1 SINE B4 6 165 0 1 1160 228 222 0 0 chr11 75396493 75396538 -46447318 - RSINE1 SINE B4 -29 136 92 1 1160 243 61 0 0 chr11 75396600 75396633 -46447223 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 1160 1192 29 0 0 chr11 75396673 75396813 -46447043 + B2_Mm2 SINE B2 1 140 -55 1 1160 225 0 0 0 chr11 75396823 75396848 -46447008 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1160 638 159 216 68 chr11 75396851 75397027 -46446829 + B3 SINE B2 34 214 -2 1 1160 941 89 111 0 chr11 75397434 75397569 -46446287 - B1_Mur4 SINE Alu 0 150 1 1 1160 682 189 20 65 chr11 75397802 75397955 -46445901 - B1_Mur3 SINE Alu -2 147 2 1 1160 441 0 0 0 chr11 75397960 75398009 -46445847 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1 1160 1238 49 0 0 chr11 75398010 75398153 -46445703 - B1_Mm SINE Alu -4 143 1 1 1160 23 54 0 0 chr11 75398154 75398191 -46445665 + AT_rich Low_complexity Low_complexity 1 37 0 1 1160 371 261 137 25 chr11 75398202 75398363 -46445493 - B3A SINE B2 -17 181 3 1 1160 874 256 9 79 chr11 75398391 75398471 -46445385 - ID_B1 SINE B4 -2 222 158 1 1160 1062 151 43 11 chr11 75398471 75398658 -46445198 - B2_Mm2 SINE B2 -1 194 2 1 1160 874 256 9 79 chr11 75398658 75398793 -46445063 - ID_B1 SINE B4 -67 157 22 1 1160 358 275 29 29 chr11 75399049 75399154 -46444702 + L2a LINE L2 3322 3426 0 1 1160 192 77 0 0 chr11 75399676 75399702 -46444154 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1160 1784 209 94 0 chr11 75399987 75400360 -46443496 + MTD LTR MaLR 12 419 0 1 1160 334 208 65 0 chr11 75400571 75400648 -46443208 - ID4 SINE ID 0 83 2 1 1160 345 286 0 74 chr11 75400656 75400777 -46443079 - PB1D10 SINE Alu -4 113 2 1 1160 257 336 63 16 chr11 75400817 75400944 -46442912 + L2b LINE L2 3241 3373 -2 1 1160 845 117 0 0 chr11 75400981 75401101 -46442755 + B1_Mur2 SINE Alu 30 149 0 1 1160 216 0 0 0 chr11 75404287 75404311 -46439545 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1160 786 131 87 7 chr11 75404594 75404732 -46439124 - B1_Mur4 SINE Alu -1 149 1 1 1160 195 69 0 0 chr11 75404764 75404793 -46439063 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1160 518 206 28 38 chr11 75404805 75404911 -46438945 - B1_Mur1 SINE Alu -12 137 33 1 1160 235 300 32 48 chr11 75404842 75404968 -46438888 - MT2B LTR ERVL -344 257 134 1 1160 260 198 47 58 chr11 75406582 75406668 -46437188 - RLTR25B LTR ERVK -503 525 441 1 1160 612 147 21 0 chr11 75406602 75406697 -46437159 - PB1D9 SINE Alu -13 107 11 1 1160 437 217 0 102 chr11 75406610 75406728 -46437128 - MT2B LTR ERVL -351 250 145 1 1160 687 223 81 32 chr11 75406747 75406932 -46436924 - B3A SINE B2 -2 196 3 1 1160 1223 47 0 33 chr11 75407043 75407196 -46436660 + B1_Mus1 SINE Alu 1 148 0 1 1160 396 103 0 0 chr11 75407197 75407255 -46436601 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 1 1160 22 0 0 0 chr11 75407420 75407442 -46436414 + AT_rich Low_complexity Low_complexity 1 22 0 1 1160 516 214 137 0 chr11 75407444 75407561 -46436295 + B1F SINE Alu 12 144 -5 1 1160 1211 61 0 0 chr11 75407570 75407717 -46436139 + B1_Mus2 SINE Alu 1 147 0 1 1160 182 118 0 29 chr11 75407717 75407752 -46436104 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 1 1160 574 228 0 66 chr11 75408706 75408842 -46435014 - B1F1 SINE Alu 0 149 23 1 1160 667 165 157 0 chr11 75410231 75410352 -46433504 - B1_Mur2 SINE Alu -7 142 3 1 1160 1055 90 0 0 chr11 75410883 75411016 -46432840 - B1_Mus1 SINE Alu -15 133 1 1 1160 594 253 20 20 chr11 75411018 75411167 -46432689 - B1F SINE Alu 0 149 1 1 1160 434 205 0 88 chr11 75411417 75411508 -46432348 + ID4 SINE ID 1 83 0 1 1160 233 333 0 14 chr11 75412336 75412348 -46431508 + B4A SINE B4 77 87 -205 1 1160 541 280 20 65 chr11 75412348 75412474 -46431382 + B1F SINE Alu 3 125 -24 1 1160 213 39 0 0 chr11 75412474 75412500 -46431356 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 1160 541 280 20 65 chr11 75412500 75412526 -46431330 + B1F SINE Alu 126 148 -1 1 1160 763 130 47 47 chr11 75412577 75412706 -46431150 + B1_Mur4 SINE Alu 22 150 0 1 1160 467 184 9 104 chr11 75412991 75413106 -46430750 - B3A SINE B2 -92 106 3 1 1160 533 267 91 37 chr11 75413737 75413924 -46429932 + B3A SINE B2 2 198 0 1 1160 216 218 0 113 chr11 75413940 75414002 -46429854 + B1_Mus1 SINE Alu 34 88 -60 1 1160 186 189 0 51 chr11 75414832 75414871 -46428985 - L3 LINE CR1 -957 3532 3496 1 1160 221 344 0 59 chr11 75415078 75415146 -46428710 + ID4_ SINE ID 1 64 -19 1 1160 297 0 0 0 chr11 75415147 75415180 -46428676 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1160 1177 148 49 10 chr11 75415272 75415477 -46428379 + B3 SINE B2 2 214 -2 1 1160 487 233 58 0 chr11 75415521 75415624 -46428232 + B1F1 SINE Alu 3 111 -38 1 1160 1693 204 74 59 chr11 75415627 75416033 -46427823 - MTD LTR MaLR -1 418 7 1 1160 768 245 161 0 chr11 75416078 75416270 -46427586 + ID_B1 SINE B4 2 224 0 1 1160 627 93 23 0 chr11 75416274 75416360 -46427496 - B1_Mur1 SINE Alu -28 121 34 1 1160 446 263 117 28 chr11 75416360 75416454 -46427402 - ID_B1 SINE B4 -25 199 4 1 1160 334 177 225 12 chr11 75416454 75416522 -46427334 - B4A SINE B4 -206 86 2 1 1160 744 43 0 0 chr11 75417411 75417503 -46426353 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1160 526 320 8 8 chr11 75417506 75417635 -46426221 - RSINE1 SINE B4 -16 149 21 1 1160 903 258 5 5 chr11 75417694 75417893 -46425963 - B3 SINE B2 -17 199 1 1 1160 284 255 37 93 chr11 75417956 75418031 -46425825 + MER2B DNA MER2_type 2 73 -263 1 1160 742 212 7 0 chr11 75418031 75418177 -46425679 + B1_Mur1 SINE Alu 3 149 0 1 1160 284 255 37 93 chr11 75418177 75418209 -46425647 + MER2B DNA MER2_type 74 103 -233 1 1160 402 240 107 29 chr11 75418753 75418856 -46425000 - ID_B1 SINE B4 -26 198 88 1 1160 343 197 61 0 chr11 75419021 75419087 -46424769 + ID4 SINE ID 13 82 -1 1 1160 1578 57 0 0 chr11 75419892 75420085 -46423771 + B2_Mm1a SINE B2 1 193 0 1 1160 472 260 29 0 chr11 75420091 75420195 -46423661 + PB1D10 SINE Alu 5 111 -6 1 1160 256 302 62 45 chr11 75422315 75422494 -46421362 + MIRc SINE MIR 4 191 -85 1 1160 735 230 0 13 chr11 75423154 75423304 -46420552 + B1_Mur2 SINE Alu 1 148 -1 1 1160 708 285 102 18 chr11 75423375 75423775 -46420081 + Lx8 LINE L1 6713 7146 -327 1 1160 471 226 128 28 chr11 75423793 75423902 -46419954 + B1_Mus2 SINE Alu 1 120 0 1 1160 710 181 71 0 chr11 75423962 75424117 -46419739 - MT2A LTR ERVL -2 531 366 1 1160 457 171 48 12 chr11 75424117 75424200 -46419656 - MT2A LTR ERVL -375 158 73 1 1160 1245 43 0 0 chr11 75424201 75424342 -46419514 + B1_Mus1 SINE Alu 2 142 -6 1 1160 476 229 0 9 chr11 75424343 75424449 -46419407 - MT2A LTR ERVL -428 105 1 1 1160 290 235 29 0 chr11 75424449 75424517 -46419339 + Lx8 LINE L1 7222 7291 -182 1 1160 399 246 115 31 chr11 75424654 75424670 -46419186 + ID_B1 SINE B4 83 223 -1 1 1160 556 219 18 0 chr11 75424670 75424784 -46419072 + B1_Mur1 SINE Alu 33 148 -1 1 1160 806 231 15 20 chr11 75424799 75424998 -46418858 + B3A SINE B2 1 198 0 1 1160 251 250 44 33 chr11 75425307 75425398 -46418458 - MER46C DNA MER2_type -12 326 235 1 1160 293 308 0 0 chr11 75425939 75426017 -46417839 - ID4_ SINE ID -2 81 4 1 1160 1245 54 0 0 chr11 75426050 75426197 -46417659 - B1_Mm SINE Alu 0 147 1 1 1160 546 206 103 0 chr11 75426200 75426307 -46417549 - PB1D9 SINE Alu 0 120 3 1 1160 574 194 210 0 chr11 75426338 75426462 -46417394 - B1_Mur4 SINE Alu 0 150 1 1 1160 1204 101 84 0 chr11 75426487 75426666 -46417190 - B2_Mm2 SINE B2 -1 194 1 1 1160 347 169 17 0 chr11 75426755 75426814 -46417042 + B3A SINE B2 1 60 -138 1 1160 663 192 54 7 chr11 75426867 75427014 -46416842 + RSINE1 SINE B4 3 156 -9 1 1160 417 268 69 61 chr11 75427190 75427321 -46416535 - RSINE1 SINE B4 -29 136 5 1 1160 257 187 65 26 chr11 75427464 75427541 -46416315 - L1ME3A LINE L1 -11 6162 6083 1 1160 1022 106 0 7 chr11 75427648 75427791 -46416065 + B1_Mus2 SINE Alu 6 147 0 1 1160 1189 68 0 0 chr11 75427918 75428064 -46415792 - B1_Mus2 SINE Alu 0 147 2 1 1160 326 281 56 32 chr11 75428186 75428311 -46415545 - RSINE1 SINE B4 -27 138 11 1 1160 26 0 0 0 chr11 75428316 75428342 -46415514 + AT_rich Low_complexity Low_complexity 1 26 0 1 1160 1504 48 43 5 chr11 75428532 75428720 -46415136 - B2_Mm2 SINE B2 0 195 1 1 1160 238 271 0 0 chr11 75428748 75428796 -46415060 + MER5B DNA MER1_type 1 48 -130 1 1160 482 254 61 45 chr11 75428813 75428945 -46414911 - ID_B1 SINE B4 -9 215 82 1 1160 1440 50 39 0 chr11 75428952 75429134 -46414722 - B2_Mm2 SINE B2 -6 189 1 1 1160 226 329 76 38 chr11 75429151 75429164 -46414692 + B4 SINE B4 81 113 -179 1 1160 260 240 0 0 chr11 75429164 75429214 -46414642 + B1F SINE Alu 6 55 -94 1 1160 226 329 76 38 chr11 75429214 75429230 -46414626 + B4 SINE B4 114 162 -130 1 1160 1839 143 119 52 chr11 75429323 75429607 -46414249 - MTC LTR MaLR -34 387 67 1 1160 1438 54 49 0 chr11 75429607 75429791 -46414065 - B2_Mm1a SINE B2 0 193 1 1 1160 1839 143 119 52 chr11 75429791 75429868 -46413988 - MTC LTR MaLR -355 66 2 1 1160 4284 149 200 50 chr11 75429871 75429950 -46413906 - MTC-int LTR MaLR -2 1256 1209 1 1160 1193 75 0 0 chr11 75429950 75430097 -46413759 - B1_Mus1 SINE Alu 0 148 2 1 1160 4284 149 200 50 chr11 75430097 75430726 -46413130 - MTC-int LTR MaLR -50 1208 438 1 1160 1128 83 7 0 chr11 75430726 75430871 -46412985 - B1_Mus2 SINE Alu -1 146 1 1 1160 4284 149 200 50 chr11 75430871 75430885 -46412971 - MTC-int LTR MaLR -821 437 402 1 1160 1629 36 0 5 chr11 75430885 75431078 -46412778 - B2_Mm2 SINE B2 -2 193 2 1 1160 4284 149 200 50 chr11 75431078 75431444 -46412412 - MTC-int LTR MaLR -857 401 4 1 1160 1096 151 210 125 chr11 75431447 75431493 -46412363 - MTC LTR MaLR -8 413 373 1 1160 1227 61 0 0 chr11 75431493 75431640 -46412216 + B1_Mus2 SINE Alu 1 147 0 1 1160 1096 151 210 125 chr11 75431640 75431882 -46411974 - MTC LTR MaLR -49 372 97 1 1160 1598 47 0 15 chr11 75431882 75432077 -46411779 - B2_Mm1a SINE B2 0 193 2 1 1160 1096 151 210 125 chr11 75432077 75432106 -46411750 - MTC LTR MaLR -325 96 68 1 1160 907 86 0 0 chr11 75432113 75432229 -46411627 - B2_Mm2 SINE B2 -78 117 2 1 1160 490 185 0 0 chr11 75432229 75432310 -46411546 - MTC LTR MaLR -340 81 1 1 1160 718 183 45 22 chr11 75432321 75432455 -46411401 + B1_Mus2 SINE Alu 11 147 0 1 1160 352 227 0 39 chr11 75432555 75432633 -46411223 + B1_Mur4 SINE Alu 76 150 0 1 1160 203 119 0 45 chr11 75434311 75434355 -46409501 + T-rich Low_complexity Low_complexity 1 42 0 1 1160 1123 69 14 0 chr11 75434617 75434761 -46409095 + B1_Mus2 SINE Alu 2 147 0 1 1160 232 120 0 39 chr11 75435467 75435519 -46408337 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 1160 907 46 0 0 chr11 75435524 75435633 -46408223 + B1_Mus2 SINE Alu 29 137 -10 1 1160 540 45 0 0 chr11 75435633 75435700 -46408156 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 1 1160 874 273 24 0 chr11 75436181 75436386 -46407470 - ID_B1 SINE B4 -13 211 2 1 1160 603 195 16 33 chr11 75436430 75436552 -46407304 + PB1D9 SINE Alu 1 120 0 1 1160 216 97 0 0 chr11 75436558 75436589 -46407267 + (GAA)n Simple_repeat Simple_repeat 2 32 0 1 1160 341 269 141 7 chr11 75436985 75437127 -46406729 + RSINE1 SINE B4 4 164 -1 1 1160 241 259 0 0 chr11 75437514 75437568 -46406288 + B1_Mur1 SINE Alu 86 139 -10 1 1160 231 36 0 0 chr11 75437568 75437596 -46406260 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1160 468 225 55 36 chr11 75437758 75437932 -46405924 - B3 SINE B2 0 195 14 1 1160 344 309 10 30 chr11 75437958 75438058 -46405798 + RSINE1 SINE B4 48 145 -20 1 1160 760 201 201 0 chr11 75438178 75438357 -46405499 + B3 SINE B2 2 216 0 1 1160 1150 95 0 0 chr11 75438566 75438713 -46405143 + B1_Mus2 SINE Alu 1 147 0 1 1160 198 0 0 0 chr11 75438713 75438735 -46405121 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1160 1287 34 0 0 chr11 75442403 75442550 -46401306 + B1_Mm SINE Alu 1 147 0 1 1160 763 173 77 82 chr11 75442883 75443078 -46400778 + B3A SINE B2 1 194 -4 1 1160 393 240 83 0 chr11 75443089 75443185 -46400671 + B1_Mur1 SINE Alu 6 109 -40 1 1160 496 239 169 0 chr11 75443219 75443361 -46400495 - B3 SINE B2 -46 170 5 1 1160 226 380 54 27 chr11 75446201 75446312 -46397544 - MamGypLTR3 LTR Gypsy -157 682 569 1 1160 497 203 8 78 chr11 75446320 75446448 -46397408 + PB1D9 SINE Alu 1 119 -1 1 1160 181 346 0 60 chr11 75447410 75447493 -46396363 - MIRb SINE MIR -9 259 182 1 1160 423 262 28 0 chr11 75449351 75449458 -46394398 - PB1D10 SINE Alu -7 110 1 1 1160 433 244 0 0 chr11 75449378 75449460 -46394396 - ID_B1 SINE B4 -63 161 80 1 1160 517 245 0 0 chr11 75449699 75449805 -46394051 + PB1D10 SINE Alu 5 110 -7 1 1160 461 229 93 50 chr11 75449867 75450028 -46393828 + B4A SINE B4 118 285 -7 1 1160 297 0 0 0 chr11 75451779 75451812 -46392044 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1160 672 173 0 0 chr11 75451825 75452004 -46391852 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1160 324 200 0 0 chr11 75452026 75452141 -46391715 + (TG)n Simple_repeat Simple_repeat 1 115 0 1 1160 693 168 0 0 chr11 75452152 75452331 -46391525 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1160 368 149 48 87 chr11 75452353 75452456 -46391400 - HAL1-3A_ME LINE L1 -840 2018 1920 1 1160 523 225 35 48 chr11 75452591 75452736 -46391120 + B1F SINE Alu 2 144 -5 1 1160 315 259 47 12 chr11 75453390 75453476 -46390380 - L1MEg LINE L1 -4114 1970 1882 1 1160 1105 54 0 0 chr11 75453496 75453643 -46390213 - B1_Mm SINE Alu 0 147 1 1 1160 492 18 0 0 chr11 75453647 75453704 -46390152 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 1 1160 1088 34 88 0 chr11 75453704 75453851 -46390005 - B2_Mm2 SINE B2 -34 161 2 1 1160 499 238 139 0 chr11 75453968 75454090 -46389766 + ID_B1 SINE B4 81 219 -5 1 1160 207 0 0 0 chr11 75454094 75454117 -46389739 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1160 245 318 30 0 chr11 75454894 75454960 -46388896 + ID4_ SINE ID 5 72 -11 1 1160 267 267 6 0 chr11 75455185 75455251 -46388605 + ID4_ SINE ID 4 72 -11 1 1160 804 68 248 0 chr11 75455470 75455587 -46388269 - B1_Mus1 SINE Alu 0 148 3 1 1160 296 286 22 11 chr11 75455646 75455669 -46388187 - PB1D10 SINE Alu -1 116 94 1 1160 826 144 64 0 chr11 75455669 75455794 -46388062 + B1_Mus1 SINE Alu 1 133 -15 1 1160 296 286 22 11 chr11 75455794 75455862 -46387994 - PB1D10 SINE Alu -24 93 25 1 1160 684 199 21 21 chr11 75455956 75456100 -46387756 - B1_Mus2 SINE Alu 0 147 4 1 1160 843 138 0 0 chr11 75456109 75456247 -46387609 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 1 1160 982 196 85 0 chr11 75457669 75457868 -46385988 + B3 SINE B2 1 216 0 1 1160 532 288 99 5 chr11 75458097 75458289 -46385567 + ID_B1 SINE B4 2 211 -13 1 1160 326 241 80 11 chr11 75458361 75458449 -46385407 - MIRc SINE MIR -66 202 109 1 1160 287 321 78 24 chr11 75458447 75458613 -46385243 + MIRc SINE MIR 11 185 -83 1 1160 222 37 0 0 chr11 75458675 75458702 -46385154 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1160 1137 85 89 73 chr11 75459644 75459744 -46384112 - B2_Mm2 SINE B2 -1 194 99 1 1160 1620 52 0 15 chr11 75459744 75459940 -46383916 + B2_Mm1t SINE B2 1 193 0 1 1160 1137 85 89 73 chr11 75459940 75460030 -46383826 - B2_Mm2 SINE B2 -97 98 1 1 1160 220 280 43 86 chr11 75463379 75463439 -46380417 + PB1 SINE Alu 16 76 -51 1 1160 1373 91 0 21 chr11 75463439 75463630 -46380226 + B2_Mm2 SINE B2 2 188 -7 1 1160 220 280 43 86 chr11 75463630 75463686 -46380170 + PB1 SINE Alu 77 127 0 1 1160 432 0 0 0 chr11 75464835 75464883 -46378973 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1160 199 321 110 0 chr11 75465788 75465897 -46377959 - L2c LINE L2 -233 3154 3034 1 1160 1193 35 7 0 chr11 75466421 75466563 -46377293 + B1_Mm SINE Alu 2 144 -3 1 1160 420 258 0 10 chr11 75466720 75466818 -46377038 + PB1D10 SINE Alu 1 97 -20 1 1160 237 65 0 0 chr11 75467719 75467750 -46376106 + (CGGGG)n Simple_repeat Simple_repeat 2 32 0 1 1160 216 226 19 0 chr11 75468730 75468783 -46375073 + GA-rich Low_complexity Low_complexity 5 58 0 1 1160 544 182 0 10 chr11 75468998 75469098 -46374758 + PB1D10 SINE Alu 13 111 -6 1 1160 230 295 101 11 chr11 75470583 75470672 -46373184 - MIR3 SINE MIR -25 183 87 1 1160 379 144 148 40 chr11 75472258 75472359 -46371497 - L2a LINE L2 0 3426 3315 1 1160 286 331 72 13 chr11 75472558 75472711 -46371145 - L2a LINE L2 -269 3157 2996 1 1160 953 335 51 31 chr11 75472889 75473375 -46370481 - L2a LINE L2 -512 2907 2412 1 1160 291 93 0 0 chr11 75473391 75473434 -46370422 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1160 193 323 151 0 chr11 75473504 75473597 -46370259 - MIRb SINE MIR -113 155 49 1 1160 1206 68 0 7 chr11 75474116 75474265 -46369591 - B1_Mus1 SINE Alu 0 148 1 1 1160 180 0 0 0 chr11 75476423 75476443 -46367413 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1 1160 350 231 105 9 chr11 75476482 75476587 -46367269 + ID_B1 SINE B4 110 224 0 1 1160 23 25 0 24 chr11 75476722 75476734 -46367122 + AT_rich Low_complexity Low_complexity 1 12 0 1 1160 1009 83 27 40 chr11 75476734 75476884 -46366972 + B1_Mus1 SINE Alu 1 148 0 1 1160 23 25 0 24 chr11 75476884 75476912 -46366944 + AT_rich Low_complexity Low_complexity 1 28 0 1 1160 279 133 0 0 chr11 75476912 75476957 -46366899 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1160 211 250 0 138 chr11 75477098 75477117 -46366739 + B1F SINE Alu 35 53 -96 1 1160 1346 105 11 0 chr11 75477117 75477308 -46366548 + B2_Mm1t SINE B2 1 193 0 1 1160 211 250 0 138 chr11 75477308 75477353 -46366503 + B1F SINE Alu 54 90 -59 1 1160 24 0 0 0 chr11 75477415 75477439 -46366417 + AT_rich Low_complexity Low_complexity 1 24 0 1 1160 1263 54 0 0 chr11 75477439 75477587 -46366269 - B1_Mus1 SINE Alu 0 148 1 1 1160 740 199 15 0 chr11 75477589 75477725 -46366131 - ID_B1 SINE B4 0 224 87 1 1160 287 291 49 68 chr11 75477593 75477755 -46366101 + YREP_Mm Unknown Unknown 181 339 -1473 1 1160 1399 52 17 22 chr11 75478249 75478427 -46365429 + B2_Mm2 SINE B2 5 181 -14 1 1160 1280 34 0 0 chr11 75478450 75478597 -46365259 + B1_Mus2 SINE Alu 1 147 0 1 1160 207 0 0 0 chr11 75478597 75478620 -46365236 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1160 1103 144 25 50 chr11 75479547 75479745 -46364111 - B2_Mm2 SINE B2 -2 193 1 1 1160 489 305 50 0 chr11 75479766 75479907 -46363949 - RSINE1 SINE B4 -2 163 16 1 1160 198 302 122 15 chr11 75480160 75480291 -46363565 - L2b LINE L2 -213 3162 3018 1 1160 189 0 0 0 chr11 75481157 75481178 -46362678 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1160 1229 54 0 0 chr11 75481182 75481330 -46362526 - B1_Mus1 SINE Alu 0 148 1 1 1160 1407 61 55 6 chr11 75482919 75483101 -46360755 + B2_Mm2 SINE B2 1 191 -4 1 1160 430 219 12 0 chr11 75486715 75486797 -46357059 + ID4_ SINE ID 1 83 0 1 1160 184 267 31 62 chr11 75486861 75486957 -46356899 - MIR3 SINE MIR -23 185 93 1 1160 403 217 144 45 chr11 75487525 75487636 -46356220 + B1_Mm SINE Alu 1 122 -25 1 1160 1298 104 15 59 chr11 75487945 75488149 -46355707 + B2_Mm2 SINE B2 1 195 0 1 1160 1020 133 109 6 chr11 75488961 75489135 -46354721 - B2_Mm2 SINE B2 -2 193 2 1 1160 760 156 83 69 chr11 75489170 75489315 -46354541 - B1_Mur3 SINE Alu 0 149 3 1 1160 1187 55 0 20 chr11 75489730 75489879 -46353977 - B1_Mus2 SINE Alu 0 147 2 1 1160 291 28 0 0 chr11 75490049 75490085 -46353771 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1160 198 0 0 0 chr11 75490129 75490151 -46353705 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1160 1298 27 0 0 chr11 75490151 75490298 -46353558 - B1_Mm SINE Alu 0 147 1 1 1160 1186 75 0 0 chr11 75490301 75490448 -46353408 - B1_Mus1 SINE Alu 0 148 2 1 1160 835 207 83 34 chr11 75490457 75490662 -46353194 - B3 SINE B2 0 216 2 1 1160 487 250 52 97 chr11 75490694 75490849 -46353007 + B1_Mur1 SINE Alu 2 149 0 1 1160 586 252 0 15 chr11 75490867 75491004 -46352852 + RSINE1 SINE B4 3 137 -28 1 1160 223 308 117 56 chr11 75491004 75491046 -46352810 + B2_Mm1a SINE B2 2 191 -2 1 1160 548 220 0 0 chr11 75491062 75491177 -46352679 + ID_B1 SINE B4 78 188 -36 1 1160 266 205 51 102 chr11 75491090 75491188 -46352668 - YREP_Mm Unknown Unknown -1516 296 204 1 1160 502 218 0 10 chr11 75491225 75491322 -46352534 + B1_Mur1 SINE Alu 40 136 -13 1 1160 252 0 0 0 chr11 75491322 75491350 -46352506 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1160 917 138 8 0 chr11 75491704 75491834 -46352022 + B1_Mus1 SINE Alu 1 131 -17 1 1160 189 0 0 0 chr11 75491980 75492001 -46351855 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1160 315 275 23 12 chr11 75492084 75492208 -46351648 - B1F SINE Alu -22 127 2 1 1160 225 0 0 0 chr11 75493903 75493928 -46349928 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1160 1369 51 96 0 chr11 75494520 75494697 -46349159 - B2_Mm2 SINE B2 -1 194 1 1 1160 335 296 18 44 chr11 75494855 75494968 -46348888 + PB1D10 SINE Alu 3 112 -5 1 1160 1213 61 0 7 chr11 75495329 75495340 -46348516 - B1_Mus1 SINE Alu 0 148 138 1 1160 212 0 36 0 chr11 75495340 75495368 -46348488 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1 1160 1213 61 0 7 chr11 75495368 75495505 -46348351 - B1_Mus1 SINE Alu -11 137 1 1 1160 207 339 41 33 chr11 75495623 75495745 -46348111 - MIR SINE MIR -2 260 138 1 1160 593 231 0 0 chr11 75495924 75496041 -46347815 - B1F2 SINE Alu 0 149 33 1 1160 260 226 97 0 chr11 75496267 75496329 -46347527 - B1_Mur2 SINE Alu -9 140 73 1 1160 822 38 0 0 chr11 75496367 75496472 -46347384 - B1_Mus2 SINE Alu -16 131 27 1 1160 960 42 21 21 chr11 75496471 75496616 -46347240 - B2_Mm1a SINE B2 0 193 49 1 1160 305 305 37 0 chr11 75496626 75496708 -46347148 - B1F2 SINE Alu -64 85 1 1 1160 426 327 82 13 chr11 75496982 75497140 -46346716 + ID_B1 SINE B4 18 186 -38 1 1160 505 127 204 10 chr11 75497197 75497300 -46346556 - B1_Mur1 SINE Alu -9 140 18 1 1160 382 254 124 49 chr11 75497300 75497396 -46346460 - ID_B1 SINE B4 -75 217 1 1 1161 1136 75 0 14 chr11 75497486 75497634 -46346222 + B1_Mus2 SINE Alu 2 147 0 1 1161 278 224 103 0 chr11 75497881 75497939 -46345917 + ID4 SINE ID 2 65 -18 1 1161 806 263 45 20 chr11 75498026 75498228 -46345628 - B3 SINE B2 -2 214 8 1 1161 244 295 13 0 chr11 75498284 75498362 -46345494 + MER103 DNA DNA 42 120 -46 1 1161 938 271 24 24 chr11 75498496 75498784 -46345072 - B4A SINE B4 -2 290 3 1 1161 198 0 0 0 chr11 75498894 75498916 -46344940 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1161 265 325 86 16 chr11 75499079 75499207 -46344649 - RSINE1 SINE B4 -28 137 1 1 1161 263 213 178 6 chr11 75499360 75499453 -46344403 - MIR SINE MIR -117 151 49 1 1161 657 226 52 30 chr11 75499528 75499718 -46344138 - ID_B1 SINE B4 0 224 25 1 1161 522 236 8 16 chr11 75500077 75500202 -46343654 - B1F2 SINE Alu -25 124 1 1 1161 1239 85 6 33 chr11 75500206 75500388 -46343468 - B2_Mm2 SINE B2 -18 177 1 2 1161 221 0 35 0 chr11 75500422 75500451 -46343405 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 1161 1704 16 11 0 chr11 75500451 75500642 -46343214 - B2_Mm1a SINE B2 0 193 1 4 1161 402 230 31 54 chr11 75500703 75500819 -46343037 + B1F SINE Alu 24 137 -12 5 1161 1272 34 0 0 chr11 75500819 75500966 -46342890 + B1_Mus2 SINE Alu 1 147 0 6 1161 402 230 31 54 chr11 75500966 75500978 -46342878 + B1F SINE Alu 138 149 0 5 1161 482 202 0 48 chr11 75501553 75501678 -46342178 + PB1D9 SINE Alu 2 120 0 7 1161 527 242 186 0 chr11 75501696 75501857 -46341999 - B3 SINE B2 -24 192 2 8 1161 189 94 0 0 chr11 75501883 75501915 -46341941 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1161 1052 58 72 0 chr11 75501915 75502054 -46341802 - B1_Mur4 SINE Alu 0 150 2 1 1161 981 88 44 0 chr11 75502098 75502234 -46341622 + B1_Mus1 SINE Alu 5 146 -2 1 1161 41 0 0 0 chr11 75502234 75502275 -46341581 + AT_rich Low_complexity Low_complexity 1 41 0 1 1161 384 22 0 0 chr11 75502391 75502436 -46341420 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1161 497 242 39 31 chr11 75502797 75502925 -46340931 + RSINE1 SINE B4 2 130 -35 1 1161 548 256 0 70 chr11 75502961 75503146 -46340710 + B4 SINE B4 3 174 -118 1 1161 362 285 62 62 chr11 75503217 75503236 -46340620 + B4A SINE B4 78 223 -69 1 1161 657 205 39 0 chr11 75503236 75503363 -46340493 + B1_Mur1 SINE Alu 15 146 -3 1 1161 408 214 50 30 chr11 75503386 75503487 -46340369 + PB1D10 SINE Alu 15 117 0 1 1161 210 338 25 0 chr11 75503881 75503961 -46339895 + PB1D10 SINE Alu 13 94 -23 1 1161 498 61 0 0 chr11 75503974 75504040 -46339816 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 2 1161 997 61 106 0 chr11 75504046 75504178 -46339678 - B1_Mus2 SINE Alu -1 146 1 2 1161 653 210 40 0 chr11 75504209 75504333 -46339523 + B3 SINE B2 2 130 -86 2 1161 399 232 143 34 chr11 75504394 75504541 -46339315 + RSINE1 SINE B4 3 165 0 2 1161 254 300 66 73 chr11 75504674 75504825 -46339031 + MT2B LTR ERVL 133 282 -319 2 1161 643 192 48 0 chr11 75504716 75504841 -46339015 + B1_Mus1 SINE Alu 17 147 -1 2 1161 445 222 181 78 chr11 75505049 75505122 -46338734 - B3 SINE B2 -5 211 144 2 1161 1654 26 0 15 chr11 75505122 75505318 -46338538 + B2_Mm1a SINE B2 1 193 0 2 1161 445 222 181 78 chr11 75505318 75505410 -46338446 - B3 SINE B2 -73 143 29 2 1161 213 65 0 0 chr11 75505450 75505481 -46338375 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1161 707 69 59 0 chr11 75505481 75505583 -46338273 - B1_Mus1 SINE Alu -8 140 33 2 1161 848 179 0 20 chr11 75506634 75506782 -46337074 - B1_Mus2 SINE Alu 0 147 3 3 1161 369 0 0 0 chr11 75506895 75506936 -46336920 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1161 726 230 117 5 chr11 75507459 75507647 -46336209 - B3 SINE B2 -6 210 2 3 1161 967 99 43 0 chr11 75507722 75507863 -46335993 - B1_Mus1 SINE Alu 0 148 2 3 1161 337 191 257 11 chr11 75508121 75508281 -46335575 - B3A SINE B2 0 195 2 3 1161 223 283 0 0 chr11 75508380 75508426 -46335430 - B1_Mus2 SINE Alu -100 47 2 3 1161 274 173 347 0 chr11 75508427 75508502 -46335354 - PB1D10 SINE Alu -7 110 10 3 1161 373 264 0 32 chr11 75508682 75508776 -46335080 - B1F2 SINE Alu -18 131 41 3 1161 397 275 60 27 chr11 75509335 75509518 -46334338 - MER119 DNA MER1_type -127 456 268 3 1161 283 115 57 19 chr11 75509710 75509763 -46334093 - RSINE1 SINE B4 -36 129 75 3 1161 720 42 0 0 chr11 75509869 75509964 -46333892 - BC1_Mm scRNA scRNA -57 95 1 4 1161 340 270 111 17 chr11 75510059 75510176 -46333680 - MER119 DNA MER1_type -408 175 48 3 1161 24 32 0 0 chr11 75510214 75510245 -46333611 + AT_rich Low_complexity Low_complexity 1 31 0 4 1161 370 211 53 25 chr11 75510369 75510457 -46333399 - B1_Mur2 SINE Alu -2 147 58 4 1161 320 296 45 18 chr11 75510500 75510610 -46333246 + MER58A DNA MER1_type 63 175 -49 4 1161 440 223 64 142 chr11 75510853 75510937 -46332919 + B4A SINE B4 33 101 -191 4 1161 1219 47 146 6 chr11 75510937 75511108 -46332748 - B2_Mm2 SINE B2 0 195 1 4 1161 440 223 64 142 chr11 75511108 75511227 -46332629 + B4A SINE B4 102 220 -72 4 1161 226 247 186 12 chr11 75511234 75511320 -46332536 + RSINE1 SINE B4 3 103 -62 4 1161 243 162 0 0 chr11 75512031 75512068 -46331788 + PB1D10 SINE Alu 70 106 -11 4 1161 303 319 49 32 chr11 75512130 75512253 -46331603 + B1F SINE Alu 22 146 -3 4 1161 1026 52 0 0 chr11 75512388 75512522 -46331334 + B1_Mus2 SINE Alu 9 142 -5 4 1161 798 169 214 6 chr11 75512606 75512779 -46331077 + B3 SINE B2 2 210 -6 5 1161 887 179 0 0 chr11 75512804 75512949 -46330907 + B1_Mur3 SINE Alu 5 149 0 5 1161 665 160 7 88 chr11 75513045 75513182 -46330674 + B1_Mur3 SINE Alu 11 136 -13 5 1161 440 129 84 21 chr11 75513379 75513474 -46330382 + B1F2 SINE Alu 13 113 -36 5 1161 217 239 139 74 chr11 75513381 75513503 -46330353 + B4A SINE B4 100 229 -63 5 1161 1311 73 73 0 chr11 75514124 75514301 -46329555 + B2_Mm2 SINE B2 2 191 -4 5 1161 508 194 91 23 chr11 75514373 75514505 -46329351 - B1_Mur4 SINE Alu -1 149 9 5 1161 393 296 27 27 chr11 75514537 75514648 -46329208 + PB1D9 SINE Alu 2 112 -8 5 1161 1349 101 26 0 chr11 75515805 75515994 -46327862 - B2_Mm2 SINE B2 -1 194 1 5 1161 754 197 13 33 chr11 75518745 75518897 -46324959 + B1_Mur2 SINE Alu 1 149 0 5 1161 364 277 69 10 chr11 75520085 75520187 -46323669 + PB1 SINE Alu 6 113 -14 6 1161 723 134 0 0 chr11 75520738 75520850 -46323006 - B1_Mur3 SINE Alu -28 121 10 6 1161 1523 172 125 6 chr11 75521100 75521445 -46322411 - ORR1B1 LTR MaLR -8 386 1 6 1161 352 231 82 52 chr11 75521873 75522092 -46321764 - RLTR15 LTR ERVK -91 268 48 6 1161 1121 82 0 0 chr11 75522096 75522242 -46321614 + B1_Mm SINE Alu 2 147 0 6 1161 234 148 0 0 chr11 75522242 75522296 -46321560 + (A)n Simple_repeat Simple_repeat 1 54 0 6 1161 1259 34 0 0 chr11 75522352 75522498 -46321358 + B1_Mm SINE Alu 2 147 0 6 1161 3614 149 78 62 chr11 75522529 75522601 -46321255 - MYSERV6-int LTR ERVK 0 8959 8904 6 1161 1213 48 7 0 chr11 75522601 75522748 -46321108 + B1_Mus1 SINE Alu 1 148 0 6 1161 1573 42 5 0 chr11 75522751 75522941 -46320915 + B2_Mm1t SINE B2 2 192 -1 6 1161 3614 149 78 62 chr11 75522941 75523603 -46320253 - MYSERV6-int LTR ERVK -56 8903 8209 6 1161 1324 64 35 0 chr11 75524059 75524231 -46319625 - B2_Mm1t SINE B2 -14 179 2 7 1161 1781 140 66 14 chr11 75524231 75524594 -46319262 - MYSERV-int LTR ERVK -755 5795 5414 7 1161 261 25 25 0 chr11 75524617 75524657 -46319199 + B1_Mus2 SINE Alu 107 147 0 7 1161 270 0 0 0 chr11 75524657 75524687 -46319169 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1161 323 159 14 28 chr11 75524694 75524765 -46319091 - MYSERV-int LTR ERVK -1140 5410 5341 7 1161 1255 60 0 0 chr11 75524765 75524933 -46318923 + B2_Mm2 SINE B2 2 169 -26 7 1161 1181 55 0 20 chr11 75524942 75525091 -46318765 - B1_Mus1 SINE Alu -1 147 2 7 1161 484 224 15 57 chr11 75525173 75525352 -46318504 - RMER4A LTR ERVK -56 529 250 7 1161 3881 221 93 87 chr11 75525356 75525604 -46318252 - MYSERV-int LTR ERVK -1440 5110 4867 7 1161 1698 26 0 0 chr11 75525604 75525794 -46318062 - B2_Mm1a SINE B2 -3 190 1 7 1161 3881 221 93 87 chr11 75525794 75526621 -46317235 - MYSERV-int LTR ERVK -1684 4866 3994 7 1161 1125 69 14 0 chr11 75526621 75526766 -46317090 - B1_Mus2 SINE Alu 0 147 1 7 1161 1110 68 7 0 chr11 75526776 75526922 -46316934 - B1_Mm SINE Alu 0 147 1 7 1161 2755 71 45 5 chr11 75526922 75527303 -46316553 - MTB LTR MaLR -4 396 1 8 1161 3881 221 93 87 chr11 75527303 75527542 -46316314 - MYSERV-int LTR ERVK -2557 3993 3776 7 1161 1183 41 0 14 chr11 75527818 75527965 -46315891 + B1_Mus2 SINE Alu 1 145 -2 8 1161 291 28 0 0 chr11 75527965 75528001 -46315855 + (CATA)n Simple_repeat Simple_repeat 2 37 0 8 1161 30 0 0 0 chr11 75528105 75528135 -46315721 + AT_rich Low_complexity Low_complexity 1 30 0 8 1161 263 30 0 0 chr11 75528144 75528177 -46315679 + B1_Mus2 SINE Alu 77 109 -38 8 1161 296 206 78 52 chr11 75528158 75528174 -46315682 - B4A SINE B4 -133 159 112 8 1161 369 113 0 0 chr11 75528174 75528227 -46315629 - B1_Mus1 SINE Alu -95 53 1 8 1161 640 161 25 8 chr11 75528231 75528350 -46315506 - B2_Mm2 SINE B2 -27 168 48 8 1161 1161 56 0 7 chr11 75528390 75528535 -46315321 - B1_Mm SINE Alu -1 146 3 8 1161 1311 75 42 11 chr11 75528931 75529120 -46314736 - B2_Mm2 SINE B2 0 195 1 8 1161 592 266 28 28 chr11 75529802 75529984 -46313872 + B3 SINE B2 2 183 -33 9 1161 691 130 119 206 chr11 75530343 75530418 -46313438 + B2_Mm2 SINE B2 2 46 -149 9 1161 942 54 139 0 chr11 75530418 75530547 -46313309 - B1_Mus2 SINE Alu 0 147 1 9 1161 691 130 119 206 chr11 75530547 75530665 -46313191 + B2_Mm2 SINE B2 47 178 -17 9 1161 261 132 0 0 chr11 75530834 75530872 -46312984 - ORR1D2 LTR MaLR -332 38 1 9 1161 302 252 116 16 chr11 75530961 75531082 -46312774 - Lx7 LINE L1 -1770 5926 5794 9 1161 301 102 0 33 chr11 75531091 75531152 -46312704 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1161 645 268 0 0 chr11 75531165 75531303 -46312553 - B3A SINE B2 -59 139 2 9 1161 546 264 34 0 chr11 75531305 75531453 -46312403 - L1_Rod LINE L1 -87 5760 5608 9 1161 1097 95 0 0 chr11 75531455 75531602 -46312254 + B1_Mus1 SINE Alu 2 148 0 9 1161 226 50 15 77 chr11 75531612 75531677 -46312179 + (CAAAAA)n Simple_repeat Simple_repeat 3 63 0 9 1161 474 264 8 0 chr11 75531814 75531935 -46311921 - B1_Mus1 SINE Alu -16 132 11 1 1161 308 282 0 91 chr11 75531832 75531953 -46311903 - MT2B LTR ERVL -336 265 156 1 1161 473 221 97 22 chr11 75531970 75532104 -46311752 - RSINE1 SINE B4 0 165 22 1 1161 377 296 0 10 chr11 75532158 75532257 -46311599 - B1F SINE Alu -50 99 2 1 1161 228 175 143 0 chr11 75532373 75532436 -46311420 + ID4_ SINE ID 2 73 -10 1 1161 393 305 17 0 chr11 75532470 75532548 -46311308 + ID SINE ID 2 81 -143 1 1161 210 300 0 0 chr11 75532548 75532598 -46311258 + PB1D10 SINE Alu 1 50 -67 1 1161 297 217 232 40 chr11 75532668 75532793 -46311063 - B1_Mur2 SINE Alu 0 149 1 1 1161 747 189 28 14 chr11 75532843 75532988 -46310868 + B1_Mur1 SINE Alu 1 147 -2 1 1161 664 148 0 9 chr11 75532998 75533107 -46310749 + B3 SINE B2 3 110 -106 1 1161 338 295 67 0 chr11 75533109 75533214 -46310642 + RMER15-int LTR ERVL 4443 4554 -445 1 1161 880 233 59 0 chr11 75533373 75533575 -46310281 - B3 SINE B2 -2 214 1 1 1161 425 184 46 0 chr11 75533582 75533669 -46310187 - PB1D9 SINE Alu -8 112 22 1 1161 335 164 388 8 chr11 75533794 75533923 -46309933 + B3A SINE B2 5 182 -16 1 1161 386 186 147 49 chr11 75533953 75534055 -46309801 + PB1D9 SINE Alu 9 120 0 1 1161 780 224 33 71 chr11 75534054 75534287 -46309569 - RMER19B LTR ERVK -335 567 344 1 1161 554 129 133 0 chr11 75534287 75534410 -46309446 + B1_Mus2 SINE Alu 1 149 0 1 1161 1055 51 80 0 chr11 75534433 75534570 -46309286 + B1_Mus1 SINE Alu 1 148 0 1 1161 1165 150 24 92 chr11 75534597 75534847 -46309009 + RMER19B LTR ERVK 3 235 -667 1 1161 1933 137 153 30 chr11 75534896 75535333 -46308523 + RMER19B LTR ERVK 373 863 -39 1 1161 772 52 200 0 chr11 75535346 75535481 -46308375 + B2_Mm2 SINE B2 34 195 0 1 1161 424 82 0 0 chr11 75535485 75535546 -46308310 + B1_Mus2 SINE Alu 86 146 -1 1 1161 309 225 26 97 chr11 75535579 75535692 -46308164 + MT2B LTR ERVL 153 257 -344 1 1161 722 138 15 15 chr11 75535605 75535737 -46308119 + B1_Mur2 SINE Alu 17 148 -1 1 1161 392 0 0 20 chr11 75535817 75535866 -46307990 + (GGGGA)n Simple_repeat Simple_repeat 1 48 0 1 1161 344 258 32 26 chr11 75536204 75536326 -46307530 - B1_Mus2 SINE Alu 0 149 26 1 1161 857 185 7 0 chr11 75536344 75536490 -46307366 - B1_Mur4 SINE Alu -2 148 2 1 1161 308 256 26 0 chr11 75536526 75536604 -46307252 - ID4_ SINE ID -2 81 2 1 1161 416 146 17 39 chr11 75536621 75536706 -46307150 + B1_Mur3 SINE Alu 1 86 -63 1 1161 244 224 0 0 chr11 75536834 75536883 -46306973 - PB1D9 SINE Alu -70 50 2 1 1161 694 276 0 15 chr11 75536909 75537115 -46306741 - B3 SINE B2 -5 211 9 1 1161 606 272 7 0 chr11 75537148 75537284 -46306572 - B1_Mur2 SINE Alu -7 142 6 1 1161 305 282 0 0 chr11 75537425 75537503 -46306353 - ID_B1 SINE B4 -1 223 146 1 1161 198 0 0 0 chr11 75537504 75537526 -46306330 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1 1161 1208 61 0 7 chr11 75537526 75537674 -46306182 - B1_Mus1 SINE Alu -1 147 1 1 1161 2074 117 12 3 chr11 75537695 75538030 -46305826 + ORR1A1 LTR MaLR 1 338 -8 1 1161 788 258 157 4 chr11 75538159 75538408 -46305448 + B4 SINE B4 1 287 -5 1 1161 423 0 0 0 chr11 75538420 75538467 -46305389 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1161 659 190 166 39 chr11 75538511 75538692 -46305164 + B3 SINE B2 2 205 -11 1 1161 1652 27 0 0 chr11 75538717 75538902 -46304954 + B2_Mm1a SINE B2 3 187 -6 1 1161 783 232 25 1 chr11 75539079 75539263 -46304593 + B3 SINE B2 2 196 -2 1 1161 307 109 0 141 chr11 75539273 75539337 -46304519 + B1_Mur4 SINE Alu 19 73 -77 1 1161 1001 145 21 72 chr11 75539288 75539495 -46304361 + ORR1B1 LTR MaLR 100 349 -45 1 1161 1090 80 0 0 chr11 75539495 75539632 -46304224 + B1_Mus1 SINE Alu 2 138 -10 1 1161 279 0 0 0 chr11 75539632 75539663 -46304193 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1161 1001 138 20 72 chr11 75539663 75539709 -46304147 + ORR1B1 LTR MaLR 350 382 -12 1 1161 214 167 0 0 chr11 75539739 75539775 -46304081 - B3A SINE B2 -160 38 3 1 1161 270 246 33 0 chr11 75539879 75539940 -46303916 + B3 SINE B2 78 140 -76 1 1161 335 209 100 18 chr11 75539952 75540074 -46303782 + B1_Mur2 SINE Alu 13 149 0 1 1161 222 148 78 47 chr11 75540101 75540165 -46303691 + ID4 SINE ID 9 74 -9 1 1161 934 214 43 0 chr11 75540113 75540300 -46303556 + B3 SINE B2 21 215 -1 1 1161 229 264 0 54 chr11 75540345 75540401 -46303455 + B4 SINE B4 80 132 -160 1 1161 29 0 0 0 chr11 75540453 75540482 -46303374 + AT_rich Low_complexity Low_complexity 1 29 0 1 1161 357 291 9 18 chr11 75540494 75540606 -46303250 + B1F SINE Alu 32 142 -7 1 1161 648 279 6 6 chr11 75540955 75541114 -46302742 + B4 SINE B4 67 225 -67 1 1161 1090 29 0 0 chr11 75541133 75541271 -46302585 + B1_Mus1 SINE Alu 11 148 0 1 1161 740 246 29 139 chr11 75541297 75541486 -46302370 + B3A SINE B2 1 176 -22 1 1161 315 71 0 0 chr11 75541486 75541528 -46302328 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1161 386 246 29 139 chr11 75541528 75541546 -46302310 + B2_Mm2 SINE B2 170 185 -10 1 1161 428 158 49 0 chr11 75541575 75541657 -46302199 + B1_Mus2 SINE Alu 62 147 0 1 1161 384 250 0 168 chr11 75541587 75541736 -46302120 + B4 SINE B4 169 292 0 1 1161 1885 150 36 9 chr11 75541790 75542127 -46301729 - MTC LTR MaLR -8 413 68 1 1161 886 108 15 0 chr11 75542144 75542274 -46301582 - B1_Mus1 SINE Alu -6 142 11 1 1161 393 20 0 0 chr11 75542307 75542357 -46301499 - B1_Mus2 SINE Alu -4 143 94 1 1161 1450 58 21 5 chr11 75542509 75542698 -46301158 + B2_Mm2 SINE B2 2 193 -2 1 1161 260 27 27 0 chr11 75542734 75542771 -46301085 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1161 1196 67 16 37 chr11 75542796 75542983 -46300873 - B2_Mm2 SINE B2 -2 193 11 1 1161 1297 197 147 49 chr11 75542988 75543436 -46300420 - RMER4B LTR ERVK -137 448 1 1 1161 352 286 20 25 chr11 75543627 75543765 -46300091 + B4 SINE B4 97 234 -58 1 1161 399 249 26 0 chr11 75543796 75543903 -46299953 - PB1D10 SINE Alu -36 113 1 1 1161 451 149 71 53 chr11 75544062 75544175 -46299681 - B1_Mur2 SINE Alu 0 149 35 1 1161 672 228 7 27 chr11 75544196 75544345 -46299511 - B1F SINE Alu -3 146 1 1 1161 1255 214 196 27 chr11 75544598 75545077 -46298779 - RMER4B LTR ERVK -9 576 17 1 1161 425 208 55 28 chr11 75545098 75545207 -46298649 - PB1D7 SINE Alu 0 120 9 1 1161 517 223 41 8 chr11 75545727 75545849 -46298007 - B1_Mur1 SINE Alu 0 149 24 1 1161 23 0 0 0 chr11 75546332 75546355 -46297501 + GC_rich Low_complexity Low_complexity 1 23 0 1 1161 241 269 15 0 chr11 75547786 75547853 -46296003 - ID4 SINE ID -14 69 2 1 1161 243 0 0 0 chr11 75548045 75548072 -46295784 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1161 495 167 62 10 chr11 75548205 75548302 -46295554 - B1_Mus2 SINE Alu -28 119 18 1 1161 1480 47 0 35 chr11 75549285 75549323 -46294533 - B2_Mm1a SINE B2 -1 192 161 1 1161 239 50 50 0 chr11 75549323 75549363 -46294493 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1161 1480 47 0 35 chr11 75549363 75549523 -46294333 - B2_Mm1a SINE B2 -33 160 1 1 1161 473 194 103 16 chr11 75549814 75549940 -46293916 - B1_Mm SINE Alu -10 137 1 1 1161 322 238 0 0 chr11 75550088 75550151 -46293705 - ID4 SINE ID -12 71 9 1 1161 326 275 21 32 chr11 75550156 75550250 -46293606 - PB1 SINE Alu -5 122 30 1 1161 316 293 81 0 chr11 75550395 75550494 -46293362 + PB1D10 SINE Alu 10 116 -1 1 1161 384 256 0 0 chr11 75550496 75550574 -46293282 + B1_Mus2 SINE Alu 1 78 -69 1 1161 306 0 0 0 chr11 75550770 75550804 -46293052 + (CTCA)n Simple_repeat Simple_repeat 4 37 0 1 1161 292 253 121 0 chr11 75550804 75550895 -46292961 - B1_Mus2 SINE Alu -13 107 6 1 1161 228 100 0 0 chr11 75551219 75551259 -46292597 + (TTTTTG)n Simple_repeat Simple_repeat 5 44 0 1 1161 782 175 40 34 chr11 75551267 75551415 -46292441 - B1_Mur2 SINE Alu 0 149 1 1 1161 402 307 86 7 chr11 75551415 75551565 -46292291 - RSINE1 SINE B4 0 165 3 1 1161 925 185 29 48 chr11 75551594 75551804 -46292052 - B3 SINE B2 -5 211 6 1 1161 1092 62 0 53 chr11 75552206 75552358 -46291498 - B1_Mm SINE Alu -3 144 1 1 1161 802 221 35 19 chr11 75552386 75552585 -46291271 - B3 SINE B2 -1 194 1 1 1161 1571 32 27 0 chr11 75552608 75552796 -46291060 - B2_Mm1a SINE B2 0 193 1 1 1161 237 136 0 0 chr11 75552801 75552845 -46291011 - PB1D10 SINE Alu 0 117 74 1 1161 376 163 10 107 chr11 75553203 75553306 -46290550 + PB1D9 SINE Alu 2 94 -26 1 1161 1149 68 7 0 chr11 75553370 75553516 -46290340 - B1_Mus2 SINE Alu 0 147 1 1 1161 324 0 0 0 chr11 75554014 75554050 -46289806 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1161 215 301 40 14 chr11 75554052 75554126 -46289730 - B4 SINE B4 -215 77 2 1 1161 299 263 84 63 chr11 75554137 75554279 -46289577 - B1F1 SINE Alu 0 149 5 1 1161 317 221 29 0 chr11 75554289 75554357 -46289499 - PB1D9 SINE Alu -6 114 45 1 1161 737 160 40 0 chr11 75554811 75554936 -46288920 + B3 SINE B2 1 130 -86 1 1161 637 248 7 7 chr11 75555421 75555559 -46288297 + B1_Mus2 SINE Alu 1 138 -9 1 1161 397 200 246 0 chr11 75555691 75555821 -46288035 + ID_B1 SINE B4 63 224 0 1 1161 451 252 9 9 chr11 75555899 75556007 -46287849 + PB1D10 SINE Alu 1 108 -9 2 1161 1668 36 0 0 chr11 75556073 75556265 -46287591 - B2_Mm1a SINE B2 -1 192 1 2 1161 532 270 21 42 chr11 75556314 75556457 -46287399 + B1_Mur1 SINE Alu 10 149 0 2 1161 816 280 12 28 chr11 75556513 75556729 -46287127 + B3A SINE B2 3 215 -1 2 1161 330 253 12 48 chr11 75556869 75556952 -46286904 - ID_B1 SINE B4 -9 215 136 2 1161 795 258 30 43 chr11 75557005 75557236 -46286620 + B4 SINE B4 1 228 -64 2 1161 733 132 139 0 chr11 75557236 75557365 -46286491 + B1_Mus2 SINE Alu 1 147 0 2 1161 261 300 73 24 chr11 75557435 75557517 -46286339 - RSINE1 SINE B4 -26 139 54 2 1161 318 239 28 0 chr11 75557633 75557704 -46286152 + ID_B1 SINE B4 117 189 -35 2 1161 907 96 78 35 chr11 75557733 75557874 -46285982 + B1_Mus1 SINE Alu 2 148 0 2 1161 279 140 0 0 chr11 75557874 75557924 -46285932 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1161 651 270 6 41 chr11 75557925 75558095 -46285761 + B3 SINE B2 2 165 -51 2 1161 342 0 0 0 chr11 75558239 75558277 -46285579 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1161 516 256 101 0 chr11 75558283 75558412 -46285444 - B3A SINE B2 -55 143 2 2 1161 565 143 20 39 chr11 75558539 75558641 -46285215 - B1_Mus2 SINE Alu -16 131 32 2 1161 298 282 77 0 chr11 75558572 75558650 -46285206 - MT2B LTR ERVL -345 256 173 2 1161 638 252 56 31 chr11 75559006 75559166 -46284690 - B3A SINE B2 -30 168 5 2 1161 1697 36 0 0 chr11 75559203 75559396 -46284460 + B2_Mm1t SINE B2 1 193 0 2 1161 254 211 174 31 chr11 75559584 75559682 -46284174 - PB1D7 SINE Alu -8 112 1 2 1161 445 180 190 0 chr11 75559867 75559967 -46283889 - PB1D9 SINE Alu 0 120 2 2 1161 205 53 0 73 chr11 75559973 75560014 -46283842 + (TTTTTA)n Simple_repeat Simple_repeat 4 41 0 2 1161 422 216 151 8 chr11 75560015 75560141 -46283715 - B1_Mur4 SINE Alu -6 144 1 2 1161 521 76 12 37 chr11 75560150 75560232 -46283624 - B1_Mus2 SINE Alu 0 147 68 2 1161 360 363 14 0 chr11 75560285 75560297 -46283559 - B1_Mur3 SINE Alu -1 148 137 2 1161 1225 41 7 0 chr11 75560297 75560443 -46283413 - B1_Mm SINE Alu 0 147 1 2 1161 521 299 9 0 chr11 75560443 75560576 -46283280 - B1F SINE Alu -13 136 1 2 1161 688 67 48 0 chr11 75560619 75560724 -46283132 - B2_Mm2 SINE B2 0 195 86 2 1161 391 283 211 26 chr11 75560755 75560911 -46282945 - B3A SINE B2 -10 188 4 2 1161 476 281 100 7 chr11 75560913 75561053 -46282803 - ID_B1 SINE B4 0 224 72 2 1161 537 217 226 32 chr11 75561089 75561275 -46282581 + ID_B1 SINE B4 3 224 0 2 1161 21 36 0 0 chr11 75561546 75561574 -46282282 + AT_rich Low_complexity Low_complexity 1 28 0 2 1161 1057 90 144 6 chr11 75561629 75561796 -46282060 - B2_Mm2 SINE B2 -1 194 5 2 1161 748 75 0 0 chr11 75561811 75561917 -46281939 - L1_Mus2 LINE L1 0 6566 6461 2 1161 565 214 395 0 chr11 75561937 75562091 -46281765 - B3 SINE B2 0 216 2 2 1161 1213 55 7 0 chr11 75562881 75563027 -46280829 - B1_Mm SINE Alu 0 147 1 2 1161 435 255 147 14 chr11 75563397 75563540 -46280316 - RSINE1 SINE B4 -1 164 3 2 1161 246 189 0 70 chr11 75563737 75563794 -46280062 - B1_Mur4 SINE Alu 0 150 98 2 1161 216 339 0 0 chr11 75564563 75564625 -46279231 - MER5A DNA MER1_type -43 146 85 2 1161 375 271 26 70 chr11 75565134 75565249 -46278607 - B1F1 SINE Alu 0 149 40 2 1161 428 293 52 0 chr11 75565616 75565732 -46278124 - B3 SINE B2 0 216 95 2 1161 435 262 115 0 chr11 75566513 75566635 -46277221 - RSINE1 SINE B4 -22 143 8 2 1161 260 283 30 20 chr11 75566916 75567017 -46276839 - MIR SINE MIR -89 173 72 2 1161 198 0 0 0 chr11 75568346 75568368 -46275488 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1161 1766 216 92 15 chr11 75568422 75568826 -46275030 - MT2A LTR ERVL -98 435 1 2 1161 345 202 111 25 chr11 75569445 75569526 -46274330 - B1_Mm SINE Alu -41 106 19 2 1161 331 280 152 0 chr11 75569529 75569654 -46274202 - B1F1 SINE Alu -4 145 2 2 1161 1163 62 0 14 chr11 75569941 75570089 -46273767 + B1_Mus1 SINE Alu 3 148 0 2 1161 198 91 0 0 chr11 75570090 75570123 -46273733 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1161 236 214 36 0 chr11 75570680 75570736 -46273120 + (CCTCG)n Simple_repeat Simple_repeat 3 60 0 2 1161 1166 62 7 14 chr11 75570798 75570946 -46272910 - B1_Mus2 SINE Alu 0 147 1 2 1161 22 0 0 0 chr11 75571147 75571169 -46272687 + AT_rich Low_complexity Low_complexity 1 22 0 2 1161 303 299 26 0 chr11 75571173 75571250 -46272606 + RSINE1 SINE B4 3 81 -84 2 1161 623 267 30 60 chr11 75571700 75571727 -46272129 + B3A SINE B2 3 29 -169 2 1161 1477 53 37 5 chr11 75571727 75571916 -46271940 - B2_Mm2 SINE B2 0 195 1 2 1161 623 267 30 60 chr11 75571916 75572087 -46271769 + B3A SINE B2 30 195 -3 2 1161 247 293 121 0 chr11 75572187 75572286 -46271570 - PB1D9 SINE Alu -9 111 1 2 1161 1158 62 7 7 chr11 75572502 75572649 -46271207 - B1_Mm SINE Alu 0 147 1 2 1161 739 236 70 0 chr11 75573253 75573452 -46270404 - B3 SINE B2 -3 213 1 2 1161 1005 216 44 20 chr11 75573983 75574186 -46269670 - B3 SINE B2 -7 209 2 2 1161 309 180 0 47 chr11 75574208 75574272 -46269584 - B1_Mus2 SINE Alu -7 140 80 2 1161 790 27 264 0 chr11 75574538 75574648 -46269208 + B1_Mus1 SINE Alu 1 139 -9 2 1161 1295 103 11 5 chr11 75574759 75574944 -46268912 - B2_Mm2 SINE B2 -8 187 2 2 1161 342 0 0 0 chr11 75575028 75575066 -46268790 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1161 1412 67 17 0 chr11 75575066 75575246 -46268610 - B2_Mm1t SINE B2 -10 183 1 2 1161 1096 95 0 0 chr11 75575428 75575565 -46268291 - B1_Mus2 SINE Alu -9 138 2 2 1161 477 0 0 0 chr11 75575667 75575720 -46268136 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1161 798 186 34 14 chr11 75575731 75575878 -46267978 - B1_Mur4 SINE Alu 0 150 1 2 1161 302 61 0 20 chr11 75576643 75576693 -46267163 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1161 1265 34 0 7 chr11 75576697 75576845 -46267011 - B1_Mm SINE Alu 0 147 1 2 1161 248 227 42 83 chr11 75576898 75576970 -46266886 - PB1D10 SINE Alu -7 142 60 2 1161 272 289 91 13 chr11 75577214 75577291 -46266565 - ID4_ SINE ID 0 83 1 2 1161 189 107 0 0 chr11 75578312 75578340 -46265516 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1161 189 0 0 0 chr11 75578358 75578379 -46265477 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1161 210 241 19 0 chr11 75578871 75578925 -46264931 + CT-rich Low_complexity Low_complexity 3 57 0 2 1161 254 234 45 30 chr11 75579875 75579941 -46263915 - PB1D10 SINE Alu -36 81 15 2 1161 218 267 0 62 chr11 75579898 75579962 -46263894 - ID_B1 SINE B4 -87 137 78 2 1161 439 279 146 24 chr11 75580229 75580394 -46263462 + B3A SINE B2 2 186 -12 2 1161 508 156 10 8 chr11 75580434 75580533 -46263323 + B1_Mur4 SINE Alu 27 150 0 2 1161 384 258 294 6 chr11 75580636 75580796 -46263060 - ID_B1 SINE B4 -4 220 15 2 1161 471 191 114 35 chr11 75580901 75581015 -46262841 - B1_Mus1 SINE Alu 0 148 26 2 1161 536 249 97 40 chr11 75581012 75581188 -46262668 - B3 SINE B2 -21 195 10 2 1161 318 279 77 26 chr11 75581559 75581718 -46262138 + L2b LINE L2 2957 3121 -305 2 1161 431 192 200 0 chr11 75582059 75582179 -46261677 - B1_Mur4 SINE Alu -3 147 4 2 1161 500 88 169 22 chr11 75582190 75582290 -46261566 - B1_Mur2 SINE Alu -22 126 12 2 1161 314 278 164 53 chr11 75582205 75582357 -46261499 - B4 SINE B4 -94 198 30 2 1161 243 0 0 0 chr11 75582856 75582883 -46260973 + (CGGG)n Simple_repeat Simple_repeat 3 29 0 2 1161 263 261 184 21 chr11 75583796 75583937 -46259919 + MIRc SINE MIR 40 203 -65 2 1161 235 338 159 58 chr11 75586558 75586696 -46257160 - Charlie12 DNA MER1_type -2691 182 31 2 1161 381 204 101 10 chr11 75586565 75586664 -46257192 + RMER30 DNA MER1_type 31 138 -64 2 1161 307 288 12 12 chr11 75587474 75587555 -46256301 - ID4_ SINE ID -2 81 1 2 1161 450 0 0 0 chr11 75587570 75587620 -46256236 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1161 439 90 15 0 chr11 75587657 75587724 -46256132 + B1_Mus2 SINE Alu 79 146 -1 2 1161 408 225 0 24 chr11 75588014 75588096 -46255760 + RSINE1 SINE B4 57 136 -29 2 1161 422 226 104 0 chr11 75588089 75588195 -46255661 - ID_B1 SINE B4 -29 195 79 2 1161 286 300 59 68 chr11 75588316 75588434 -46255422 - PB1D10 SINE Alu 0 117 1 2 1161 343 349 70 25 chr11 75588446 75588731 -46255125 + L1MB5 LINE L1 5697 5994 -180 2 1161 505 276 0 0 chr11 75588803 75588908 -46254948 + PB1D10 SINE Alu 2 106 -11 2 1161 496 299 92 0 chr11 75589336 75589510 -46254346 - MER2 DNA MER2_type -59 286 97 2 1161 577 250 7 22 chr11 75589535 75589670 -46254186 - B3 SINE B2 0 216 84 2 1161 368 322 43 73 chr11 75590071 75590235 -46253621 + ID_B1 SINE B4 54 212 -12 2 1161 365 287 50 0 chr11 75590945 75591046 -46252810 - MER117 DNA MER1_type -47 150 45 2 1161 671 144 106 64 chr11 75592296 75592437 -46251419 + B1_Mus1 SINE Alu 1 147 -1 2 1161 649 279 103 30 chr11 75592473 75592735 -46251121 + B4A SINE B4 2 282 -10 3 1161 235 379 17 6 chr11 75592746 75592921 -46250935 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 1161 242 204 10 30 chr11 75592965 75593066 -46250790 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1161 261 252 65 0 chr11 75593072 75593195 -46250661 + (CATATA)n Simple_repeat Simple_repeat 2 132 0 3 1161 266 276 53 0 chr11 75593232 75593308 -46250548 + ID4 SINE ID 2 81 -2 3 1161 191 182 16 113 chr11 75593438 75593500 -46250356 + MIRm SINE MIR 203 258 -18 3 1161 419 297 8 56 chr11 75594808 75594933 -46248923 - B1F2 SINE Alu -29 120 2 3 1161 246 128 0 0 chr11 75594942 75594981 -46248875 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1161 1755 179 0 56 chr11 75595857 75596194 -46247662 + ORR1A3 LTR MaLR 1 318 -8 3 1161 952 199 136 17 chr11 75597890 75598161 -46245695 + MTD LTR MaLR 5 419 0 3 1161 381 102 0 0 chr11 75598390 75598449 -46245407 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1161 554 252 8 30 chr11 75599774 75599905 -46243951 - RSINE1 SINE B4 0 165 38 3 1161 195 42 0 0 chr11 75599944 75599968 -46243888 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 3 1161 694 142 0 9 chr11 75599968 75600075 -46243781 - B1_Mur4 SINE Alu -39 111 6 3 1161 344 285 52 92 chr11 75599973 75600147 -46243709 - B4 SINE B4 -98 194 28 3 1161 714 241 0 0 chr11 75600117 75600250 -46243606 + B1_Mur1 SINE Alu 10 142 -7 3 1161 1143 158 101 10 chr11 75600329 75600527 -46243329 + B3 SINE B2 1 216 0 3 1161 1626 26 0 15 chr11 75601253 75601449 -46242407 + B2_Mm1a SINE B2 1 193 0 3 1161 181 243 0 0 chr11 75602255 75602292 -46241564 - L2c LINE L2 -220 3167 3131 3 1161 238 184 42 19 chr11 75602665 75602738 -46241118 + MIRb SINE MIR 99 183 -85 3 1161 585 42 0 0 chr11 75604047 75604119 -46239737 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 3 1161 1132 73 0 0 chr11 75604119 75604255 -46239601 - B1_Mus1 SINE Alu -12 136 1 3 1161 648 38 0 0 chr11 75604337 75604416 -46239440 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 3 1161 393 176 0 0 chr11 75604418 75604492 -46239364 + GA-rich Low_complexity Low_complexity 2 75 0 3 1161 1200 111 0 0 chr11 75604494 75604674 -46239182 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1161 275 311 0 13 chr11 75604680 75604755 -46239101 + ID4 SINE ID 2 75 -8 3 1161 979 147 6 58 chr11 75605224 75605397 -46238459 + RSINE1 SINE B4 2 165 0 3 1161 561 264 85 30 chr11 75606189 75606388 -46237468 + MLT1L LTR MaLR 178 387 -223 3 1161 561 15 0 0 chr11 75606791 75606857 -46236999 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1161 22 35 0 0 chr11 75608645 75608674 -46235182 + GC_rich Low_complexity Low_complexity 1 29 0 3 1161 213 94 0 0 chr11 75609089 75609121 -46234735 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 3 1161 37 23 0 0 chr11 75609212 75609256 -46234600 + GC_rich Low_complexity Low_complexity 1 44 0 3 1161 31 0 0 0 chr11 75609402 75609433 -46234423 + GC_rich Low_complexity Low_complexity 1 31 0 3 1161 260 238 24 12 chr11 75609608 75609693 -46234163 + (CGAG)n Simple_repeat Simple_repeat 3 88 0 3 1161 1138 146 109 15 chr11 75610610 75610812 -46233044 + URR1B DNA MER1_type 5 225 0 3 1161 258 209 25 0 chr11 75611008 75611085 -46232771 + MIR SINE MIR 106 186 -82 3 1161 293 192 48 71 chr11 75611215 75611299 -46232557 - ID4_ SINE ID 0 83 2 3 1161 420 279 99 104 chr11 75611362 75611554 -46232302 - ID_B1 SINE B4 -29 263 73 3 1161 244 186 32 48 chr11 75611611 75611673 -46232183 - MIRc SINE MIR -96 180 117 3 1161 538 288 68 0 chr11 75611737 75611869 -46231987 + B1F2 SINE Alu 3 143 -6 3 1161 321 26 0 0 chr11 75612200 75612238 -46231618 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1161 199 306 0 0 chr11 75612359 75612408 -46231448 - MIRc SINE MIR -121 147 99 3 1161 187 315 21 43 chr11 75612800 75612893 -46230963 + MIRb SINE MIR 22 112 -156 3 1161 353 333 39 8 chr11 75613362 75613492 -46230364 + MER5A DNA MER1_type 56 189 0 3 1161 242 179 18 0 chr11 75613749 75613805 -46230051 + CT-rich Low_complexity Low_complexity 2 58 0 3 1161 843 136 14 7 chr11 75613819 75613960 -46229896 - B1_Mus1 SINE Alu 0 148 7 3 1161 501 198 142 0 chr11 75613982 75614088 -46229768 - ID_B1 SINE B4 -1 223 103 3 1161 227 275 111 12 chr11 75614934 75615015 -46228841 - MIR SINE MIR -80 128 40 3 1161 241 229 84 14 chr11 75615448 75615519 -46228337 + ID SINE ID 1 76 -148 3 1161 476 281 9 0 chr11 75615774 75615888 -46227968 + PB1 SINE Alu 1 115 -12 3 1161 331 230 45 107 chr11 75615906 75616018 -46227838 + PB1D9 SINE Alu 3 107 -13 3 1161 295 286 92 14 chr11 75616038 75616050 -46227806 + L1MB3 LINE L1 5991 6002 -181 3 1161 2267 112 52 0 chr11 75616050 75616397 -46227459 - ORR1B2 LTR MaLR 0 367 3 3 1161 295 286 92 14 chr11 75616397 75616526 -46227330 + L1MB3 LINE L1 6003 6143 -40 3 1161 316 353 68 61 chr11 75616790 75616893 -46226963 - L1ME3B LINE L1 -229 6011 5899 3 1161 681 277 25 6 chr11 75616893 75617053 -46226803 - RSINE1 SINE B4 0 165 3 3 1161 316 353 68 61 chr11 75617053 75617071 -46226785 - L1ME3B LINE L1 -342 5898 5882 3 1161 699 194 28 21 chr11 75617071 75617213 -46226643 - B1_Mur2 SINE Alu -5 144 2 3 1161 316 353 68 61 chr11 75617213 75617401 -46226455 - L1ME3B LINE L1 -359 5881 5700 3 1161 384 22 0 0 chr11 75617627 75617672 -46226184 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1161 656 233 53 7 chr11 75617672 75617812 -46226044 - RSINE1 SINE B4 -15 150 4 3 1161 258 347 48 0 chr11 75617820 75617944 -46225912 - L1ME3B LINE L1 -632 5608 5479 3 1161 434 310 0 0 chr11 75618154 75618254 -46225602 + RSINE1 SINE B4 43 142 -23 3 1161 1564 52 0 40 chr11 75618371 75618573 -46225283 - B2_Mm2 SINE B2 0 195 2 3 1161 216 0 0 0 chr11 75618639 75618663 -46225193 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 3 1161 225 0 0 0 chr11 75618666 75618691 -46225165 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1161 475 234 54 0 chr11 75618697 75618808 -46225048 - RSINE1 SINE B4 -47 118 2 3 1161 285 162 37 24 chr11 75619378 75619460 -46224396 + CT-rich Low_complexity Low_complexity 6 88 0 3 1161 806 182 0 0 chr11 75619477 75619614 -46224242 - B1_Mus2 SINE Alu 0 147 11 3 1161 221 319 103 81 chr11 75619567 75619741 -46224115 + B3 SINE B2 32 209 -7 3 1161 252 261 0 22 chr11 75619824 75619897 -46223959 - PB1D7 SINE Alu -81 68 1 3 1161 1246 48 0 0 chr11 75619938 75620084 -46223772 + B1_Mus2 SINE Alu 1 146 -1 3 1161 185 361 27 27 chr11 75620892 75621003 -46222853 + L2b LINE L2 3028 3138 -237 3 1161 228 287 43 65 chr11 75621728 75621821 -46222035 + LTR90B LTR LTR 7 97 -699 3 1161 304 186 17 0 chr11 75621755 75621814 -46222042 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 3 1161 243 280 27 0 chr11 75621814 75621830 -46222026 + ID_B1 SINE B4 14 90 -134 3 1161 717 229 45 55 chr11 75621950 75622149 -46221707 - B3A SINE B2 0 198 2 3 1161 790 254 12 17 chr11 75622197 75622369 -46221487 + B3A SINE B2 5 175 -23 3 1161 327 113 0 0 chr11 75622389 75622451 -46221405 + (CAGA)n Simple_repeat Simple_repeat 2 63 0 3 1161 268 290 79 58 chr11 75622735 75622874 -46220982 - L1MB8 LINE L1 0 6178 6037 3 1161 228 305 162 7 chr11 75622952 75623094 -46220762 - MIR SINE MIR -21 241 78 3 1161 191 347 134 13 chr11 75623145 75623294 -46220562 - MIR3 SINE MIR -8 200 34 3 1161 225 0 0 0 chr11 75623343 75623368 -46220488 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1161 708 250 0 0 chr11 75623378 75623510 -46220346 - B1F1 SINE Alu -16 133 2 3 1161 243 0 0 0 chr11 75623518 75623545 -46220311 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1161 338 245 84 11 chr11 75623545 75623633 -46220223 - B1F SINE Alu -12 137 42 3 1161 467 241 37 9 chr11 75624696 75624805 -46219051 - PB1D10 SINE Alu -3 114 3 3 1161 1418 95 21 0 chr11 75624860 75625050 -46218806 - B2_Mm2 SINE B2 0 195 2 3 1161 618 242 18 48 chr11 75625072 75625237 -46218619 - RSINE1 SINE B4 -1 164 5 3 1161 315 0 0 0 chr11 75625876 75625911 -46217945 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1161 409 281 123 0 chr11 75626128 75626242 -46217614 + RSINE1 SINE B4 2 129 -36 3 1161 375 130 0 0 chr11 75626248 75626325 -46217531 + (TC)n Simple_repeat Simple_repeat 2 78 0 3 1161 252 0 0 0 chr11 75626325 75626353 -46217503 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1161 183 200 25 0 chr11 75626804 75626844 -46217012 - MIRc SINE MIR -136 132 92 3 1161 422 309 75 27 chr11 75627763 75627949 -46215907 + B4A SINE B4 90 284 -8 3 1161 975 244 48 4 chr11 75628009 75628260 -46215596 + B4A SINE B4 2 263 -29 3 1161 183 80 0 0 chr11 75628319 75628344 -46215512 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1161 255 170 0 0 chr11 75628433 75628480 -46215376 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1162 936 209 18 97 chr11 75629475 75629588 -46214268 - B3 SINE B2 -1 215 114 3 1162 3327 154 74 9 chr11 75629588 75630144 -46213712 - Lx5 LINE L1 -3 7047 6456 3 1162 936 209 18 97 chr11 75630144 75630258 -46213598 - B3 SINE B2 -103 113 6 3 1162 720 148 0 0 chr11 75630273 75630395 -46213461 + (TTC)n Simple_repeat Simple_repeat 1 122 0 3 1162 857 34 103 0 chr11 75630396 75630513 -46213343 - B1_Mus1 SINE Alu -6 142 14 3 1162 270 0 0 0 chr11 75631047 75631077 -46212779 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1162 657 36 0 0 chr11 75631077 75631161 -46212695 + (CAGAGA)n Simple_repeat Simple_repeat 2 85 0 3 1162 231 36 0 0 chr11 75631330 75631358 -46212498 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1162 209 243 14 0 chr11 75631507 75631577 -46212279 + (TATG)n Simple_repeat Simple_repeat 1 71 0 3 1162 331 302 69 15 chr11 75631779 75631910 -46211946 - MER34 LTR ERV1 -16 526 389 3 1162 262 163 61 0 chr11 75632030 75632079 -46211777 - MER45A DNA Tip100 -46 132 81 4 1162 331 224 0 0 chr11 75632450 75632517 -46211339 + PB1D10 SINE Alu 23 89 -28 4 1162 189 121 0 0 chr11 75632988 75633021 -46210835 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1162 814 154 272 0 chr11 75634704 75634866 -46208990 - B3 SINE B2 -10 206 1 4 1162 269 169 50 17 chr11 75635151 75635211 -46208645 + MTC-int LTR MaLR 168 229 -1029 4 1162 247 250 24 24 chr11 75635192 75635274 -46208582 + MTC-int LTR MaLR 925 1006 -252 4 1162 915 311 84 9 chr11 75635363 75635817 -46208039 + L1MB3 LINE L1 5668 6155 -28 4 1162 3808 92 72 2 chr11 75636235 75636761 -46207095 - RMER2 LTR ERV1 -4 563 1 4 1162 342 233 68 0 chr11 75638033 75638136 -46205720 + RMER15 LTR ERVL 422 531 -44 4 1162 203 311 44 0 chr11 75638226 75638316 -46205540 + L2b LINE L2 3271 3364 -11 4 1162 315 222 108 48 chr11 75638494 75638656 -46205200 - MIR SINE MIR -76 192 19 4 1162 357 306 53 91 chr11 75639184 75639371 -46204485 - B3A SINE B2 -1 197 18 4 1162 315 0 0 0 chr11 75639412 75639447 -46204409 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1162 821 178 12 12 chr11 75639450 75639615 -46204241 - B2_Mm2 SINE B2 -27 168 4 4 1162 1451 129 8 55 chr11 75639673 75639910 -46203946 - URR1A DNA MER1_type 0 226 1 4 1162 1752 105 52 27 chr11 75640001 75640317 -46203539 + ORR1A2 LTR MaLR 1 374 0 4 1162 195 125 0 0 chr11 75640317 75640357 -46203499 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1162 1144 58 0 0 chr11 75640357 75640494 -46203362 + B1_Mus1 SINE Alu 1 137 -11 4 1162 361 78 0 0 chr11 75640508 75640559 -46203297 + ORR1A3 LTR MaLR 273 323 -3 4 1162 313 269 143 23 chr11 75640767 75640900 -46202956 + RSINE1 SINE B4 2 150 -15 4 1162 577 270 104 33 chr11 75641172 75641413 -46202443 - HAL1 LINE L1 -734 1773 1516 4 1162 228 122 0 0 chr11 75641534 75641575 -46202281 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1162 299 306 0 0 chr11 75641735 75641807 -46202049 - ID2 SINE ID -6 77 6 4 1162 42 0 0 0 chr11 75641980 75642022 -46201834 + AT_rich Low_complexity Low_complexity 1 42 0 4 1162 855 174 14 0 chr11 75642025 75642163 -46201693 + B1_Mur2 SINE Alu 5 144 -5 4 1162 1012 222 39 5 chr11 75642202 75642410 -46201446 - B3 SINE B2 0 216 2 4 1162 441 81 0 0 chr11 75642434 75642496 -46201360 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1162 527 191 99 7 chr11 75642532 75642661 -46201195 - B3A SINE B2 -69 129 1 4 1162 559 222 149 74 chr11 75642837 75643012 -46200844 - B3A SINE B2 -10 188 1 4 1162 269 26 26 0 chr11 75643044 75643082 -46200774 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1162 617 239 22 7 chr11 75643159 75643294 -46200562 - ID_B1 SINE B4 -24 200 64 4 1162 620 292 64 11 chr11 75643323 75643510 -46200346 - B4 SINE B4 -95 197 1 4 1162 415 197 66 0 chr11 75644160 75644236 -46199620 - ID4_ SINE ID -2 81 1 4 1162 332 153 153 0 chr11 75647427 75647499 -46196357 + RSINE1 SINE B4 60 142 -23 4 1162 495 319 30 12 chr11 75647732 75647897 -46195959 + MER117 DNA MER1_type 30 197 0 4 1162 208 321 68 54 chr11 75647911 75648059 -46195797 - L3 LINE CR1 -198 4291 4142 4 1162 1202 115 5 91 chr11 75648873 75649083 -46194773 - B2_Mm1t SINE B2 0 193 2 4 1162 508 298 165 70 chr11 75649239 75649755 -46194101 - Tigger13a DNA MER2_type 0 771 207 4 1162 486 0 0 0 chr11 75649952 75650006 -46193850 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1162 189 0 0 0 chr11 75650006 75650026 -46193830 + (CG)n Simple_repeat Simple_repeat 2 22 0 4 1162 185 259 93 0 chr11 75650291 75650345 -46193511 + MIRm SINE MIR 210 268 -8 4 1162 521 264 146 90 chr11 75650418 75650536 -46193320 - ID_B1 SINE B4 0 224 96 4 1162 573 238 104 60 chr11 75650536 75650719 -46193137 - B3A SINE B2 -6 192 2 4 1162 521 264 146 90 chr11 75650719 75650812 -46193044 - ID_B1 SINE B4 -129 95 1 4 1162 351 136 0 0 chr11 75652197 75652256 -46191600 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1162 844 286 70 4 chr11 75652261 75652531 -46191325 - B4A SINE B4 -4 288 1 4 1162 223 264 159 11 chr11 75654498 75654586 -46189270 + MIR SINE MIR 43 143 -119 4 1162 336 48 0 0 chr11 75655649 75655691 -46188165 + (GGA)n Simple_repeat Simple_repeat 3 44 0 4 1162 402 200 228 10 chr11 75656098 75656199 -46187657 + RSINE1 SINE B4 6 128 -37 4 1162 286 237 118 0 chr11 75656244 75656320 -46187536 - PB1D10 SINE Alu -18 99 15 4 1162 501 151 0 0 chr11 75657628 75657714 -46186142 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 1162 221 289 40 0 chr11 75658684 75658760 -46185096 - ID4_ SINE ID 0 83 5 4 1162 376 215 248 23 chr11 75658807 75658940 -46184916 - MER102c DNA MER1_type -71 260 98 4 1162 204 40 0 0 chr11 75659227 75659252 -46184604 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1162 331 296 43 0 chr11 75659480 75659595 -46184261 + MamSINE1 SINE tRNA 8 127 -163 4 1162 450 0 0 0 chr11 75659692 75659742 -46184114 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1162 214 239 0 0 chr11 75659748 75659794 -46184062 - L3 LINE CR1 -105 4384 4339 4 1162 466 252 16 16 chr11 75661205 75661326 -46182530 - PB1 SINE Alu -6 121 1 4 1162 829 270 101 10 chr11 75661557 75661853 -46182003 - L1MB7 LINE L1 -22 6162 5840 4 1162 420 20 0 0 chr11 75661854 75661903 -46181953 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1162 578 132 219 0 chr11 75661991 75662105 -46181751 - B1_Mur1 SINE Alu 0 149 11 4 1162 319 281 66 101 chr11 75662009 75662172 -46181684 - MT2B LTR ERVL -324 277 122 4 1162 414 234 52 50 chr11 75662172 75662442 -46181414 + MLT1A LTR MaLR 1 374 0 4 1162 313 322 101 101 chr11 75662485 75662606 -46181250 - L1MB7 LINE L1 -1717 4429 4314 4 1162 917 153 42 0 chr11 75662606 75662750 -46181106 - B1_Mur4 SINE Alu 0 150 1 4 1162 313 322 101 101 chr11 75662750 75662915 -46180941 - L1MB7 LINE L1 -1833 4313 4143 4 1162 1157 175 50 0 chr11 75662928 75663128 -46180728 + B3 SINE B2 1 210 -6 4 1162 420 239 23 100 chr11 75663336 75663466 -46180390 - B1F2 SINE Alu 0 149 30 4 1162 925 188 111 24 chr11 75663477 75663684 -46180172 - URR1B DNA MER1_type 0 225 1 4 1162 574 152 19 9 chr11 75664206 75664312 -46179544 + B1_Mur1 SINE Alu 42 148 -1 4 1162 23 0 0 0 chr11 75664476 75664499 -46179357 + AT_rich Low_complexity Low_complexity 1 23 0 4 1162 362 241 210 36 chr11 75664588 75664726 -46179130 + RSINE1 SINE B4 2 163 -2 4 1162 201 74 0 0 chr11 75666360 75666387 -46177469 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1162 375 189 40 0 chr11 75667511 75667585 -46176271 + ID4_ SINE ID 2 78 -5 4 1162 638 125 9 0 chr11 75668212 75668324 -46175532 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 4 1162 241 294 128 0 chr11 75670253 75670362 -46173494 + MER103 DNA DNA 2 124 -42 4 1162 333 0 0 0 chr11 75670430 75670467 -46173389 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1162 1264 27 0 7 chr11 75670518 75670666 -46173190 - B1_Mus1 SINE Alu 0 148 2 4 1162 255 268 34 26 chr11 75671000 75671120 -46172736 - L1MB1 LINE L1 -169 6020 5907 4 1162 255 242 10 87 chr11 75671154 75671258 -46172598 - L1MB1 LINE L1 -367 5816 5721 4 1162 185 65 32 0 chr11 75672628 75672659 -46171197 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1162 739 196 35 0 chr11 75673339 75673482 -46170374 - B1_Mur1 SINE Alu -1 148 1 4 1162 309 151 0 0 chr11 75673799 75673852 -46170004 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 1162 204 67 0 0 chr11 75673861 75673891 -46169965 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 4 1162 519 253 126 84 chr11 75675398 75675588 -46168268 + B3A SINE B2 1 198 0 4 1162 783 70 0 42 chr11 75676716 75676836 -46167020 - B1_Mus2 SINE Alu 0 147 33 4 1162 246 105 0 0 chr11 75677236 75677274 -46166582 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1162 256 267 0 113 chr11 75677287 75677384 -46166472 + MT2B LTR ERVL 172 257 -344 4 1162 831 116 16 0 chr11 75677298 75677427 -46166429 + B1_Mur2 SINE Alu 19 149 0 4 1162 762 238 0 0 chr11 75677662 75677805 -46166051 - RSINE1 SINE B4 -22 143 1 4 1162 274 234 81 50 chr11 75677826 75677925 -46165931 - PB1D9 SINE Alu 0 120 19 4 1162 394 206 65 11 chr11 75677860 75677953 -46165903 - B4 SINE B4 -125 167 70 4 1162 188 277 67 67 chr11 75678094 75678183 -46165673 - MIRm SINE MIR -4 272 184 4 1162 299 243 27 0 chr11 75678465 75678539 -46165317 - ID4 SINE ID 0 83 8 4 1162 831 311 88 77 chr11 75681118 75681480 -46162376 + MTEa LTR MaLR 14 379 0 4 1162 1061 319 84 61 chr11 75681496 75682218 -46161638 - L1MB3 LINE L1 -1 6182 5444 4 1162 2853 114 22 2 chr11 75682290 75682703 -46161153 + MTC LTR MaLR 1 421 0 4 1162 259 333 50 25 chr11 75682734 75682854 -46161002 + L2a LINE L2 3284 3406 -20 4 1162 192 135 0 0 chr11 75682855 75682892 -46160964 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 4 1162 381 300 135 0 chr11 75682896 75683066 -46160790 + MIRb SINE MIR 1 193 -75 4 1162 585 275 33 117 chr11 75685998 75686112 -46157744 - B3A SINE B2 -1 197 92 4 1162 792 145 289 0 chr11 75686112 75686278 -46157578 + B3 SINE B2 2 215 -1 4 1162 585 275 33 117 chr11 75686278 75686377 -46157479 - B3A SINE B2 -107 91 2 4 1162 348 111 0 0 chr11 75686395 75686449 -46157407 + (TATG)n Simple_repeat Simple_repeat 2 55 0 4 1162 316 165 48 60 chr11 75686450 75686534 -46157322 - ID4 SINE ID 0 83 1 4 1162 298 160 21 194 chr11 75686781 75686874 -46156982 - B4A SINE B4 0 292 216 4 1162 1275 123 62 0 chr11 75686878 75687105 -46156751 - RLTR31A_Mm LTR ERVK -281 303 63 5 1162 873 250 54 5 chr11 75687088 75687309 -46156547 - B4A SINE B4 -59 233 2 4 1162 25 0 0 0 chr11 75687781 75687806 -46156050 + AT_rich Low_complexity Low_complexity 1 25 0 5 1162 460 238 0 56 chr11 75688223 75688330 -46155526 + ID_B1 SINE B4 116 216 -8 5 1162 210 213 64 0 chr11 75688290 75688337 -46155519 + PB1D7 SINE Alu 70 119 -1 5 1162 514 183 39 0 chr11 75688652 75688756 -46155100 - PB1D10 SINE Alu 0 117 10 5 1162 300 301 0 0 chr11 75688704 75688777 -46155079 - B4A SINE B4 -146 146 74 5 1162 705 56 0 0 chr11 75688779 75688869 -46154987 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1162 370 300 129 45 chr11 75688965 75689466 -46154390 + L2a LINE L2 2765 3304 -122 5 1162 196 100 0 0 chr11 75689506 75689536 -46154320 + MIRm SINE MIR 232 261 -15 5 1162 22 0 0 0 chr11 75689752 75689774 -46154082 + GC_rich Low_complexity Low_complexity 1 22 0 5 1162 204 217 0 0 chr11 75690531 75690577 -46153279 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 5 1162 617 165 55 0 chr11 75690577 75690704 -46153152 - B1_Mur4 SINE Alu -16 134 1 5 1162 395 65 64 11 chr11 75691052 75691146 -46152710 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 1162 371 283 33 0 chr11 75691148 75691240 -46152616 - PB1D10 SINE Alu -22 95 1 5 1162 244 315 71 44 chr11 75691151 75691264 -46152592 - B4A SINE B4 -117 175 60 5 1162 225 0 0 0 chr11 75691680 75691705 -46152151 + (GGATG)n Simple_repeat Simple_repeat 1 25 0 5 1162 207 204 20 20 chr11 75694254 75694304 -46149552 - MIRb SINE MIR 0 268 219 5 1162 519 304 67 19 chr11 75694870 75695078 -46148778 - MLT1A LTR MaLR -154 220 3 5 1162 614 155 128 8 chr11 75695835 75695952 -46147904 - RSINE1 SINE B4 -33 132 2 5 1162 376 308 195 0 chr11 75698497 75698682 -46145174 + ID_B1 SINE B4 1 221 -3 5 1162 229 333 144 10 chr11 75699101 75699198 -46144658 - PB1D7 SINE Alu -1 119 10 5 1162 285 365 8 34 chr11 75699633 75699752 -46144104 + RSINE1 SINE B4 50 165 0 5 1162 597 52 0 0 chr11 75700332 75700409 -46143447 + (TG)n Simple_repeat Simple_repeat 1 77 0 5 1162 419 248 0 76 chr11 75700419 75700524 -46143332 - RSINE1 SINE B4 -32 133 37 5 1162 255 298 0 0 chr11 75700535 75700592 -46143264 - RSINE1 SINE B4 -106 59 3 5 1162 383 208 14 0 chr11 75700623 75700695 -46143161 + ID4 SINE ID 2 74 -9 5 1162 218 190 0 23 chr11 75700711 75700754 -46143102 + CT-rich Low_complexity Low_complexity 2 43 0 5 1162 311 260 0 52 chr11 75700759 75700836 -46143020 - ID4 SINE ID -10 73 1 5 1162 728 176 13 39 chr11 75702531 75702685 -46141171 + RSINE1 SINE B4 15 164 -1 5 1162 282 29 0 0 chr11 75702716 75702751 -46141105 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1162 543 210 0 0 chr11 75702758 75702858 -46140998 + PB1D10 SINE Alu 12 111 -6 5 1162 180 0 0 0 chr11 75702872 75702892 -46140964 + (GGA)n Simple_repeat Simple_repeat 2 21 0 5 1162 741 59 0 10 chr11 75703927 75704029 -46139827 - B1_Mus2 SINE Alu 0 147 47 5 1162 254 155 150 33 chr11 75703977 75704037 -46139819 - RLTR25A LTR ERVK -531 572 506 5 1162 309 320 87 58 chr11 75704252 75704458 -46139398 - MIRb SINE MIR 0 268 57 5 1162 388 333 8 0 chr11 75704880 75705000 -46138856 - B4A SINE B4 -170 122 2 5 1162 279 285 237 28 chr11 75705356 75705533 -46138323 + MER21B LTR ERV1 466 679 -184 5 1162 244 328 30 0 chr11 75706208 75706275 -46137581 - BC1_Mm scRNA scRNA -82 70 2 5 1162 206 213 43 0 chr11 75706278 75706325 -46137531 + L2b LINE L2 3293 3341 -34 5 1162 464 204 29 0 chr11 75708030 75708133 -46135723 - B1_Mus2 SINE Alu -9 138 33 5 1162 228 256 148 68 chr11 75708070 75708158 -46135698 - MT2B LTR ERVL -348 253 159 5 1162 727 169 88 0 chr11 75709549 75709685 -46134171 + B1_Mus1 SINE Alu 1 148 0 5 1162 416 328 8 23 chr11 75710503 75710631 -46133225 + ID_B1 SINE B4 95 220 -4 5 1162 395 273 31 43 chr11 75710813 75710974 -46132882 - MIR SINE MIR -6 256 98 5 1162 331 194 97 0 chr11 75711218 75711290 -46132566 - ID4 SINE ID -4 79 1 5 1162 363 251 360 12 chr11 75712272 75712433 -46131423 - ID_B1 SINE B4 -7 217 1 5 1162 385 274 0 19 chr11 75712526 75712634 -46131222 - PB1D10 SINE Alu -9 108 3 5 1162 830 292 23 17 chr11 75713792 75714092 -46129764 + L1MB2 LINE L1 5524 5825 -346 5 1162 354 320 23 8 chr11 75714106 75714235 -46129621 - MER5A1 DNA MER1_type -31 135 5 5 1162 366 288 54 0 chr11 75715686 75715797 -46128059 + PB1D7 SINE Alu 3 119 -1 5 1162 252 0 0 0 chr11 75715812 75715840 -46128016 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1162 573 131 0 0 chr11 75715840 75715947 -46127909 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 1162 335 325 67 48 chr11 75716010 75716175 -46127681 + MLT1B LTR MaLR 5 172 -218 5 1162 240 369 40 13 chr11 75716438 75716589 -46127267 - MIRb SINE MIR -10 258 104 5 1162 180 0 0 0 chr11 75716712 75716732 -46127124 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 5 1162 218 371 137 36 chr11 75716949 75717071 -46126785 + L2a LINE L2 2689 2815 -604 5 1162 852 222 34 29 chr11 75717071 75717280 -46126576 + B3 SINE B2 1 210 -6 5 1162 258 324 104 22 chr11 75717280 75717564 -46126292 + L2a LINE L2 2816 3130 -257 5 1162 187 293 150 50 chr11 75717617 75717757 -46126099 + L2a LINE L2 3250 3403 -23 5 1162 723 192 8 0 chr11 75717779 75717909 -46125947 + B1_Mur4 SINE Alu 13 143 -7 5 1162 769 230 153 11 chr11 75718950 75719104 -46124752 + B3 SINE B2 1 182 -34 5 1162 342 0 0 0 chr11 75719104 75719142 -46124714 + (CATA)n Simple_repeat Simple_repeat 1 38 0 5 1162 769 230 153 11 chr11 75719142 75719176 -46124680 + B3 SINE B2 183 216 0 5 1162 289 297 102 25 chr11 75722781 75722957 -46120899 + L2a LINE L2 2905 3097 -329 5 1162 351 0 0 0 chr11 75723845 75723884 -46119972 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1162 306 299 128 0 chr11 75724158 75724275 -46119581 + MIRb SINE MIR 24 155 -113 5 1162 970 55 110 0 chr11 75724660 75724787 -46119069 - B1_Mus1 SINE Alu -6 142 2 5 1162 342 156 0 0 chr11 75725370 75725434 -46118422 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1162 1085 214 34 0 chr11 75725557 75725763 -46118093 + B3 SINE B2 4 216 0 5 1162 371 280 19 31 chr11 75725776 75725938 -46117918 + L1M5 LINE L1 5569 5728 -451 5 1162 545 264 99 20 chr11 75725935 75726136 -46117720 + L1MB7 LINE L1 5862 6078 -106 5 1162 462 244 76 30 chr11 75726186 75726317 -46117539 + RSINE1 SINE B4 3 139 -26 5 1162 994 276 74 27 chr11 75726430 75726795 -46117061 - Charlie1a DNA MER1_type -164 1291 910 5 1162 262 225 111 12 chr11 75726802 75726883 -46116973 - Charlie1a DNA MER1_type -1337 118 35 5 1162 605 313 7 0 chr11 75727194 75727341 -46116515 + RSINE1 SINE B4 1 148 -17 5 1162 335 305 211 22 chr11 75727367 75727595 -46116261 - MamRep4096 DNA hAT? -127 299 29 5 1162 205 125 18 18 chr11 75728364 75728421 -46115435 + A-rich Low_complexity Low_complexity 2 58 0 5 1162 194 267 100 0 chr11 75728457 75728517 -46115339 + MIRc SINE MIR 76 141 -127 5 1162 278 168 5 43 chr11 75729116 75729192 -46114664 + PB1D10 SINE Alu 42 112 -8 5 1162 426 79 40 0 chr11 75729192 75729268 -46114588 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1162 186 221 145 14 chr11 75729459 75729528 -46114328 + MIR3 SINE MIR 112 189 -19 5 1162 395 272 0 0 chr11 75730330 75730411 -46113445 + RSINE1 SINE B4 6 86 -79 5 1162 594 260 31 16 chr11 75730405 75730534 -46113322 + RSINE1 SINE B4 20 150 -15 5 1162 225 234 0 0 chr11 75730827 75730874 -46112982 - L1M5 LINE L1 -440 5684 5638 5 1162 393 263 36 50 chr11 75732372 75732512 -46111344 + MER117 DNA MER1_type 58 195 -2 5 1162 995 140 0 0 chr11 75733130 75733273 -46110583 + B1_Mur4 SINE Alu 1 143 -7 5 1162 279 0 0 0 chr11 75733390 75733421 -46110435 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1162 632 220 0 9 chr11 75733429 75733539 -46110317 - B1_Mus2 SINE Alu -38 109 1 5 1162 232 270 10 73 chr11 75733539 75733574 -46110282 + YREP_Mm Unknown Unknown 317 345 -1467 5 1162 655 236 76 0 chr11 75733584 75733728 -46110128 - RSINE1 SINE B4 -8 157 3 5 1162 618 304 87 23 chr11 75733809 75734075 -46109781 - B4A SINE B4 -8 284 2 5 1162 249 98 0 0 chr11 75734109 75734150 -46109706 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 5 1162 492 100 0 0 chr11 75734498 75734578 -46109278 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 1162 296 96 39 0 chr11 75734818 75734870 -46108986 + (CGTG)n Simple_repeat Simple_repeat 1 54 0 5 1162 423 243 234 0 chr11 75735028 75735135 -46108721 - B1F SINE Alu -5 144 13 5 1162 661 274 7 0 chr11 75735165 75735311 -46108545 + RSINE1 SINE B4 4 150 -15 5 1162 22 0 0 0 chr11 75735335 75735357 -46108499 + AT_rich Low_complexity Low_complexity 1 22 0 5 1162 675 269 0 0 chr11 75735358 75735499 -46108357 + B1_Mur1 SINE Alu 2 142 -7 5 1162 247 238 0 0 chr11 75735870 75735933 -46107923 + C-rich Low_complexity Low_complexity 1 63 0 5 1162 302 163 0 0 chr11 75736648 75736691 -46107165 - HAL1-3A_ME LINE L1 -846 2012 1970 5 1162 461 235 84 46 chr11 75736822 75736968 -46106888 - B1F SINE Alu 0 150 1 5 1162 274 257 128 5 chr11 75737234 75737330 -46106526 + B1F1 SINE Alu 14 116 -1 5 1162 326 302 144 6 chr11 75737435 75737608 -46106248 + Charlie4a DNA MER1_type 37 233 -275 5 1162 273 290 180 61 chr11 75737637 75737898 -46105958 + B4A SINE B4 1 292 0 5 1162 601 280 13 0 chr11 75738188 75738338 -46105518 + RSINE1 SINE B4 5 156 -9 5 1162 402 222 0 0 chr11 75738571 75738738 -46105118 + (TG)n Simple_repeat Simple_repeat 2 168 0 6 1162 312 27 0 0 chr11 75738823 75738860 -46104996 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1162 221 57 0 28 chr11 75738860 75738895 -46104961 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1162 455 286 22 4 chr11 75738940 75739066 -46104790 - B1F SINE Alu -20 129 3 6 1162 354 273 28 75 chr11 75738973 75739080 -46104776 - ID_B1 SINE B4 -49 175 74 6 1162 263 299 134 0 chr11 75740569 75740696 -46103160 + L1M4 LINE L1 5091 5234 -912 6 1162 750 218 52 31 chr11 75740938 75741132 -46102724 + B3A SINE B2 1 198 0 6 1162 269 306 50 10 chr11 75741146 75741245 -46102611 + PB1D10 SINE Alu 5 107 -10 6 1162 483 280 78 24 chr11 75741569 75741774 -46102082 - MIRb SINE MIR -6 262 47 6 1162 353 307 11 0 chr11 75742179 75742267 -46101589 + RSINE1 SINE B4 62 150 -15 6 1162 198 103 0 0 chr11 75742298 75742327 -46101529 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1162 285 151 53 21 chr11 75742328 75742423 -46101433 + (TTATA)n Simple_repeat Simple_repeat 2 99 0 6 1162 551 238 33 53 chr11 75742431 75742582 -46101274 + RSINE1 SINE B4 3 150 -15 6 1162 1055 116 7 0 chr11 75742627 75742773 -46101083 - B1_Mus2 SINE Alu 0 147 1 6 1162 455 247 107 18 chr11 75742785 75742954 -46100902 + L1MC LINE L1 5354 5537 -807 6 1162 486 248 47 0 chr11 75743467 75743596 -46100260 - Tigger7 DNA MER2_type -28 2463 2329 6 1162 556 198 73 0 chr11 75743596 75743692 -46100164 + PB1D10 SINE Alu 1 103 -14 6 1162 419 335 92 26 chr11 75743744 75744017 -46099839 + B4A SINE B4 2 292 0 6 1162 713 224 18 115 chr11 75744036 75744253 -46099603 + B3A SINE B2 3 198 0 6 1162 31 0 0 0 chr11 75744255 75744286 -46099570 + AT_rich Low_complexity Low_complexity 1 31 0 6 1162 340 252 187 0 chr11 75744395 75744534 -46099322 + L1MC LINE L1 5632 5796 -548 6 1162 257 328 33 0 chr11 75744860 75744921 -46098935 + ID4 SINE ID 17 79 -4 6 1162 708 226 112 34 chr11 75744934 75745113 -46098743 + ID_B1 SINE B4 1 193 -31 6 1162 329 294 18 18 chr11 75745115 75745226 -46098630 + GA-rich Low_complexity Low_complexity 5 115 0 6 1162 216 0 0 0 chr11 75745249 75745273 -46098583 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1162 261 0 0 0 chr11 75745273 75745301 -46098555 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 1162 823 175 184 5 chr11 75745576 75745766 -46098090 - MTD LTR MaLR -16 403 180 6 1162 628 213 0 16 chr11 75746124 75746248 -46097608 + B1_Mur2 SINE Alu 28 149 0 6 1162 263 235 38 23 chr11 75746252 75746340 -46097516 + B1F SINE Alu 56 140 -9 6 1162 268 228 18 0 chr11 75746353 75746410 -46097446 + ID4_ SINE ID 26 83 0 6 1162 580 246 42 0 chr11 75747566 75747708 -46096148 + B1F1 SINE Alu 1 148 -1 6 1162 470 170 11 0 chr11 75748226 75748320 -46095536 + GA-rich Low_complexity Low_complexity 1 95 0 6 1162 23 0 0 0 chr11 75748743 75748766 -46095090 + AT_rich Low_complexity Low_complexity 1 23 0 6 1162 780 168 95 0 chr11 75748774 75748911 -46094945 + B1_Mur4 SINE Alu 1 150 0 6 1162 373 314 27 77 chr11 75750361 75750442 -46093414 + ID_B1 SINE B4 48 221 -3 6 1162 751 78 20 0 chr11 75750442 75750544 -46093312 + B1_Mus2 SINE Alu 43 146 -1 6 1162 514 207 4 36 chr11 75751522 75751640 -46092216 - PB1D10 SINE Alu -1 116 9 6 1162 2354 166 10 12 chr11 75752103 75752511 -46091345 + MTB_Mm LTR MaLR 1 407 0 6 1162 576 235 79 29 chr11 75752584 75752724 -46091132 + B1_Mur2 SINE Alu 2 148 -1 6 1162 264 315 135 45 chr11 75752815 75752948 -46090908 + ID_B1 SINE B4 2 146 -78 6 1162 364 311 62 112 chr11 75753061 75753365 -46090491 + ORR1E LTR MaLR 67 355 -4 6 1162 838 29 0 0 chr11 75753362 75753464 -46090392 + B1_Mm SINE Alu 36 137 -10 6 1162 531 0 0 0 chr11 75753464 75753523 -46090333 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1162 234 262 97 53 chr11 75754026 75754122 -46089734 + Charlie24 DNA MER1_type 1892 1992 -458 6 1162 1140 52 52 7 chr11 75754122 75754277 -46089579 - MT2C_Mm LTR ERVL -2 473 312 6 1162 2227 45 0 0 chr11 75754274 75754542 -46089314 + MTB LTR MaLR 133 400 0 6 1162 341 329 89 159 chr11 75754725 75755210 -46088646 + MLT1K LTR MaLR 137 587 -8 6 1162 507 237 13 109 chr11 75756067 75756223 -46087633 + B4 SINE B4 3 143 -149 6 1162 1143 233 53 194 chr11 75756260 75756296 -46087560 - MTE2b LTR MaLR -2 377 342 6 1162 1820 169 49 43 chr11 75756296 75756472 -46087384 + ORR1D1 LTR MaLR 1 165 -209 6 1162 234 0 0 0 chr11 75756472 75756498 -46087358 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1162 1820 169 49 43 chr11 75756498 75756691 -46087165 + ORR1D1 LTR MaLR 166 372 -2 6 1162 1143 233 53 194 chr11 75756691 75757091 -46086765 - MTE2b LTR MaLR -38 341 3 6 1162 260 286 59 12 chr11 75757165 75757250 -46086606 + B4 SINE B4 200 288 -4 6 1162 815 231 24 19 chr11 75757237 75757435 -46086421 + ID_B1 SINE B4 31 236 -56 6 1162 1659 22 0 0 chr11 75757435 75757619 -46086237 + B2_Mm1a SINE B2 2 185 -8 6 1162 3220 129 80 22 chr11 75757957 75758510 -46085346 + RMER4B LTR ERVK 1 585 0 6 1162 275 360 97 24 chr11 75758511 75758676 -46085180 + MER117 DNA MER1_type 16 192 -5 6 1162 216 171 0 0 chr11 75758895 75758930 -46084926 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 6 1162 21 71 0 0 chr11 75759101 75759143 -46084713 + AT_rich Low_complexity Low_complexity 1 42 0 6 1163 280 219 81 14 chr11 75760487 75760561 -46083295 + ID2 SINE ID 1 79 -4 6 1163 1057 236 65 0 chr11 75761313 75761589 -46082267 - L1MB7 LINE L1 -17 6167 5874 6 1163 546 217 52 7 chr11 75761578 75761731 -46082125 - L1M4b LINE L1 -2982 4024 3865 6 1163 539 254 42 85 chr11 75761734 75761760 -46082096 - B2_Mm2 SINE B2 -12 183 158 6 1163 273 119 0 0 chr11 75761760 75761802 -46082054 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1163 849 207 25 1 chr11 75761802 75761964 -46081892 - B3A SINE B2 -32 166 3 6 1163 821 255 60 8 chr11 75761964 75762229 -46081627 - L1M4b LINE L1 -3171 3835 3557 6 1163 600 225 16 32 chr11 75762245 75762369 -46081487 + RMER20B LTR ERVK 4 125 -502 6 1163 443 259 43 0 chr11 75762692 75762808 -46081048 - L1M4b LINE L1 -3481 3525 3405 6 1163 749 188 0 23 chr11 75762888 75763019 -46080837 + B1_Mur1 SINE Alu 22 149 0 6 1163 592 223 41 105 chr11 75763051 75763238 -46080618 - L1M4b LINE L1 -3599 3407 3231 6 1163 755 304 36 22 chr11 75763238 75763514 -46080342 - B4A SINE B4 -8 284 5 6 1163 592 223 41 105 chr11 75763514 75763592 -46080264 - L1M4b LINE L1 -3776 3230 3159 6 1163 431 247 91 26 chr11 75763612 75763766 -46080090 - RSINE1 SINE B4 0 165 2 6 1163 440 237 0 0 chr11 75763900 75763976 -46079880 - ID4 SINE ID -6 77 2 6 1163 21 0 0 0 chr11 75763980 75764001 -46079855 + AT_rich Low_complexity Low_complexity 1 21 0 6 1163 338 350 42 7 chr11 75764249 75764393 -46079463 - L1M4b LINE L1 -4613 2721 2573 6 1163 1596 62 0 10 chr11 75764519 75764716 -46079140 - B2_Mm2 SINE B2 0 195 1 6 1163 815 173 72 0 chr11 75764734 75764873 -46078983 - B1_Mur4 SINE Alu 0 150 2 6 1163 1138 209 5 9 chr11 75764946 75765159 -46078697 - B3 SINE B2 -4 212 1 6 1163 269 299 0 0 chr11 75765228 75765305 -46078551 + ID4 SINE ID 4 80 -3 6 1163 186 128 0 0 chr11 75765491 75765530 -46078326 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1163 400 239 55 0 chr11 75766777 75766886 -46076970 + PB1D10 SINE Alu 3 117 0 6 1163 277 209 0 82 chr11 75767133 75767205 -46076651 + MLT1A0 LTR MaLR 91 156 -209 6 1163 853 252 12 42 chr11 75767205 75767445 -46076411 + B4A SINE B4 1 233 -59 6 1163 691 193 102 6 chr11 75767445 75767612 -46076244 - Lx9 LINE L1 -1177 6467 6285 6 1163 3041 157 66 28 chr11 75767647 75767949 -46075907 + Lx9 LINE L1 6486 6811 -833 6 1163 1467 78 0 10 chr11 75767949 75768144 -46075712 + B2_Mm2 SINE B2 3 195 0 6 1163 3041 157 66 28 chr11 75768144 75768446 -46075410 + Lx9 LINE L1 6812 7113 -531 6 1163 1269 48 0 0 chr11 75769180 75769327 -46074529 - B1_Mus2 SINE Alu 0 147 1 6 1163 447 230 8 66 chr11 75769461 75769582 -46074274 - B3A SINE B2 0 198 85 6 1163 499 239 53 0 chr11 75769581 75769694 -46074162 - B1_Mus2 SINE Alu -12 135 17 6 1163 233 192 29 0 chr11 75769685 75769744 -46074112 - MT2B2 LTR ERVL -284 300 186 6 1163 999 231 34 0 chr11 75769752 75769960 -46073896 - B3 SINE B2 0 216 2 6 1163 308 295 18 3 chr11 75770044 75770156 -46073700 + ID4 SINE ID 9 125 -27 6 1163 345 315 103 34 chr11 75770375 75770579 -46073277 + L1ME3B LINE L1 5164 5381 -765 6 1163 384 190 0 0 chr11 75770939 75771018 -46072838 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1163 322 266 133 42 chr11 75771043 75771208 -46072648 + L1ME3B LINE L1 5904 6083 -157 6 1163 6578 153 39 16 chr11 75771209 75772449 -46071407 + Lx5 LINE L1 5761 7011 -39 6 1163 259 203 13 13 chr11 75772460 75772535 -46071321 + GA-rich Low_complexity Low_complexity 5 79 0 6 1163 285 210 145 0 chr11 75772642 75772704 -46071152 + RSINE1 SINE B4 38 108 -57 6 1163 645 248 14 21 chr11 75773064 75773208 -46070648 + ID_B1 SINE B4 81 223 -1 6 1163 216 0 0 0 chr11 75773257 75773281 -46070575 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1163 1281 68 0 0 chr11 75773469 75773631 -46070225 - B2_Mm2 SINE B2 -32 163 2 6 1163 1208 276 47 3 chr11 75773672 75773970 -46069886 + MTE2b LTR MaLR 61 371 -8 6 1163 400 189 20 100 chr11 75774123 75774223 -46069633 + B1_Mur1 SINE Alu 58 149 0 6 1163 288 221 64 13 chr11 75774240 75774318 -46069538 + ID4 SINE ID 2 83 0 6 1163 2303 110 50 44 chr11 75774348 75774709 -46069147 + ORR1B2 LTR MaLR 5 367 0 6 1163 306 0 0 0 chr11 75774832 75774866 -46068990 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1163 633 175 0 0 chr11 75774866 75775037 -46068819 + GA-rich Low_complexity Low_complexity 1 171 0 6 1163 297 0 0 0 chr11 75775038 75775071 -46068785 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1163 200 261 258 42 chr11 75775189 75775309 -46068547 + L3 LINE CR1 4291 4436 -53 6 1163 250 364 9 142 chr11 75776194 75776335 -46067521 + ID_B1 SINE B4 2 176 -48 7 1163 302 224 45 0 chr11 75776335 75776402 -46067454 + PB1 SINE Alu 43 112 -15 7 1163 374 245 47 73 chr11 75776779 75776929 -46066927 + MIRb SINE MIR 77 222 -46 7 1163 648 209 94 22 chr11 75776954 75777013 -46066843 - B2_Mm2 SINE B2 -1 194 132 7 1163 285 29 0 0 chr11 75777013 75777047 -46066809 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1163 778 134 5 1 chr11 75777047 75777168 -46066688 - B3 SINE B2 -64 131 1 7 1163 288 307 56 28 chr11 75778102 75778246 -46065610 + MIRc SINE MIR 35 182 -86 7 1163 25 51 0 0 chr11 75780230 75780269 -46063587 + GC_rich Low_complexity Low_complexity 1 39 0 7 1163 23 33 0 0 chr11 75780720 75780750 -46063106 + GC_rich Low_complexity Low_complexity 1 30 0 7 1163 215 222 22 0 chr11 75780961 75781006 -46062850 + L2c LINE L2 3340 3385 -2 7 1163 222 37 0 0 chr11 75782180 75782207 -46061649 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 7 1163 337 219 37 103 chr11 75782505 75782612 -46061244 + PB1 SINE Alu 28 127 0 7 1163 713 283 45 0 chr11 75782636 75782834 -46061022 - ID_B1 SINE B4 -17 207 1 7 1163 487 301 7 43 chr11 75783425 75783564 -46060292 - MER20 DNA MER1_type -59 160 27 7 1163 486 0 0 0 chr11 75784080 75784134 -46059722 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1163 551 186 20 10 chr11 75784142 75784240 -46059616 + PB1D9 SINE Alu 9 107 -13 7 1163 324 0 0 0 chr11 75784254 75784290 -46059566 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 7 1163 831 133 30 0 chr11 75784300 75784446 -46059410 - B2_Mm2 SINE B2 -52 164 1 7 1163 559 174 331 30 chr11 75784478 75784644 -46059212 + B3 SINE B2 1 216 0 7 1163 309 237 174 10 chr11 75784836 75784934 -46058922 + PB1D7 SINE Alu 1 114 -6 7 1163 688 299 7 8 chr11 75784946 75785117 -46058739 + B3A SINE B2 1 167 -28 7 1163 240 86 0 0 chr11 75785117 75785152 -46058704 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1163 434 301 27 49 chr11 75785152 75785165 -46058691 + B2_Mm2 SINE B2 168 180 -15 7 1163 311 149 0 0 chr11 75785186 75785233 -46058623 + B4A SINE B4 9 55 -237 7 1163 970 255 23 5 chr11 75785495 75785712 -46058144 + ID_B1 SINE B4 2 222 -2 7 1163 321 172 78 0 chr11 75786071 75786135 -46057721 + HAL1-3A_ME LINE L1 1976 2044 -814 7 1163 735 256 63 15 chr11 75786198 75786404 -46057452 + B3 SINE B2 1 216 0 7 1163 802 76 17 0 chr11 75787007 75787126 -46056730 + (GA)n Simple_repeat Simple_repeat 2 122 0 7 1163 222 37 0 0 chr11 75787168 75787195 -46056661 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1163 318 281 56 0 chr11 75787207 75787296 -46056560 - B1F SINE Alu -55 94 1 7 1163 777 220 121 8 chr11 75787297 75787554 -46056302 - L1MC3 LINE L1 -129 7656 7371 7 1163 438 217 305 21 chr11 75787631 75787772 -46056084 + B3A SINE B2 3 183 -15 7 1163 348 260 41 10 chr11 75787823 75787933 -46055923 - L1MC3 LINE L1 -483 7302 7204 7 1163 475 299 15 0 chr11 75787987 75788000 -46055856 - B1_Mus2 SINE Alu -1 146 134 7 1163 1224 108 43 5 chr11 75788000 75788034 -46055822 - B2_Mm2 SINE B2 -1 194 160 7 1163 432 0 0 0 chr11 75788034 75788082 -46055774 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 7 1163 1224 108 43 5 chr11 75788082 75788233 -46055623 - B2_Mm2 SINE B2 -36 159 2 7 1163 475 299 15 0 chr11 75788233 75788353 -46055503 - B1_Mus2 SINE Alu -14 133 12 7 1163 452 304 32 74 chr11 75788429 75788713 -46055143 - L1MC3 LINE L1 -784 7001 6730 7 1163 241 349 0 0 chr11 75788753 75788819 -46055037 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 7 1163 469 207 12 0 chr11 75789278 75789360 -46054496 - ID4_ SINE ID 0 83 1 7 1163 683 130 37 9 chr11 75789422 75789531 -46054325 - B1_Mur2 SINE Alu -1 148 37 7 1163 560 223 138 60 chr11 75789528 75789695 -46054161 - B2_Mm2 SINE B2 -15 180 1 7 1163 350 261 22 43 chr11 75789695 75789787 -46054069 - PB1D10 SINE Alu -10 107 18 7 1163 414 0 0 0 chr11 75789840 75789886 -46053970 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1163 351 328 14 55 chr11 75789888 75790033 -46053823 - ID_B1 SINE B4 -6 218 80 7 1163 218 128 64 0 chr11 75790036 75790083 -46053773 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 7 1163 1234 61 0 0 chr11 75790083 75790230 -46053626 - B1_Mus2 SINE Alu 0 147 1 7 1163 253 279 77 39 chr11 75790637 75790767 -46053089 - MIRb SINE MIR -29 179 60 7 1163 268 267 0 113 chr11 75791204 75791219 -46052637 + MT2B LTR ERVL 155 158 -443 7 1163 571 233 54 0 chr11 75791219 75791348 -46052508 + B1_Mur2 SINE Alu 2 137 -12 7 1163 308 287 106 62 chr11 75791468 75791628 -46052228 - RMER15 LTR ERVL -1 574 408 7 1163 522 70 0 0 chr11 75791682 75791753 -46052103 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 1163 282 214 0 5 chr11 75791866 75791936 -46051920 + B1_Mur2 SINE Alu 81 149 -1 7 1163 808 258 39 17 chr11 75791949 75792130 -46051726 + B3 SINE B2 2 186 -30 7 1163 210 37 0 0 chr11 75792218 75792245 -46051611 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1163 440 18 0 17 chr11 75792295 75792353 -46051503 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1163 783 152 63 28 chr11 75792522 75792664 -46051192 + B1_Mur3 SINE Alu 3 149 0 7 1163 920 154 12 0 chr11 75792666 75792835 -46051021 + GA-rich Low_complexity Low_complexity 1 171 0 7 1163 212 156 0 0 chr11 75792835 75792867 -46050989 + polypurine Low_complexity Low_complexity 1 32 0 7 1163 195 204 0 0 chr11 75793261 75793305 -46050551 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1163 358 246 356 50 chr11 75793351 75793573 -46050283 - B4A SINE B4 -2 290 1 7 1163 392 238 131 66 chr11 75794134 75794332 -46049524 - MLT1B LTR MaLR 0 390 180 7 1163 476 271 0 0 chr11 75794356 75794452 -46049404 - PB1 SINE Alu -3 124 29 7 1163 1263 178 14 5 chr11 75794634 75794843 -46049013 + B3 SINE B2 2 212 -4 7 1163 375 242 54 114 chr11 75794868 75795017 -46048839 + B1F SINE Alu 3 142 -7 7 1163 547 160 263 53 chr11 75795127 75795279 -46048577 - B2_Mm1t SINE B2 -9 184 1 7 1163 1212 54 0 7 chr11 75795765 75795914 -46047942 - B1_Mus1 SINE Alu 0 148 1 7 1163 693 215 0 8 chr11 75795979 75796101 -46047755 + RSINE1 SINE B4 2 122 -43 7 1163 222 282 99 104 chr11 75796101 75796161 -46047695 + B2_Mm2 SINE B2 1 181 -14 7 1163 214 379 0 0 chr11 75796187 75796245 -46047611 + B4 SINE B4 87 144 -148 7 1163 1168 195 14 14 chr11 75796262 75796475 -46047381 + B3 SINE B2 3 215 -1 7 1163 1416 76 16 0 chr11 75796475 75796660 -46047196 - B2_Mm2 SINE B2 -7 188 1 7 1163 23 0 0 0 chr11 75796660 75796683 -46047173 + AT_rich Low_complexity Low_complexity 1 23 0 7 1163 706 204 49 31 chr11 75796842 75797004 -46046852 + B2_Mm2 SINE B2 29 193 -2 7 1163 299 336 17 111 chr11 75797159 75797276 -46046580 - PB1D7 SINE Alu 0 117 12 7 1163 971 31 82 30 chr11 75797280 75797403 -46046453 + B1_Mm SINE Alu 7 140 -7 7 1163 180 0 0 0 chr11 75797403 75797423 -46046433 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1163 247 342 116 32 chr11 75797456 75797485 -46046371 - L2a LINE L2 -20 3406 3382 7 1163 4063 30 32 0 chr11 75797485 75797952 -46045904 - LTRIS_Mm LTR ERV1 0 482 1 7 1163 247 342 116 32 chr11 75797952 75798112 -46045744 - L2a LINE L2 -45 3381 3201 7 1163 513 0 0 0 chr11 75798235 75798292 -46045564 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1163 571 88 22 0 chr11 75798433 75798524 -46045332 + (TTCTC)n Simple_repeat Simple_repeat 1 93 0 7 1163 610 237 0 0 chr11 75798532 75798646 -46045210 + PB1D9 SINE Alu 1 114 -6 7 1163 316 217 229 84 chr11 75798897 75798926 -46044930 - B2_Mm2 SINE B2 -3 192 157 7 1163 528 16 0 0 chr11 75798926 75798987 -46044869 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1163 564 42 0 0 chr11 75798987 75799057 -46044799 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1163 316 217 229 84 chr11 75799057 75799192 -46044664 - B2_Mm2 SINE B2 -39 156 4 7 1163 555 192 16 198 chr11 75799224 75799406 -46044450 - ID_B1 SINE B4 -55 169 21 7 1163 385 200 42 14 chr11 75799449 75799520 -46044336 - ID4_ SINE ID -10 73 1 7 1163 839 287 14 0 chr11 75799520 75799729 -46044127 - MER115 DNA Tip100 -1 692 481 7 1163 322 398 61 35 chr11 75799855 75800084 -46043772 - MER115 DNA Tip100 -428 265 31 7 1163 1226 56 0 0 chr11 75800552 75800696 -46043160 - B1_Mm SINE Alu -2 145 2 7 1163 288 77 0 0 chr11 75800799 75800838 -46043018 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 7 1163 315 243 70 12 chr11 75800993 75801094 -46042762 - PB1 SINE Alu -9 108 1 7 1163 445 253 11 11 chr11 75801138 75801230 -46042626 - RSINE1 SINE B4 -39 126 35 7 1163 220 208 60 132 chr11 75801205 75801288 -46042568 + PB1 SINE Alu 47 123 -4 7 1163 610 296 49 25 chr11 75801298 75801461 -46042395 + ID_B1 SINE B4 3 169 -55 7 1163 526 196 19 10 chr11 75801530 75801633 -46042223 + B1_Mur3 SINE Alu 26 129 -20 7 1163 333 294 53 111 chr11 75801629 75801836 -46042020 + B4 SINE B4 85 279 -13 7 1163 1446 99 16 0 chr11 75801967 75802159 -46041697 + B2_Mm2 SINE B2 1 195 0 7 1163 447 92 0 0 chr11 75802220 75802285 -46041571 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 1163 484 235 83 5 chr11 75802573 75802734 -46041122 - B3A SINE B2 -40 176 1 7 1163 212 176 53 105 chr11 75803201 75803258 -46040598 - PB1D10 SINE Alu 0 117 64 7 1163 491 250 77 8 chr11 75803207 75803324 -46040532 - ID_B1 SINE B4 0 224 100 7 1163 728 224 49 28 chr11 75803341 75803518 -46040338 + B3A SINE B2 8 189 -6 7 1163 262 256 82 21 chr11 75803575 75803755 -46040101 - MLT1L LTR MaLR -196 414 190 7 1163 623 178 31 14 chr11 75803946 75804100 -46039756 - B3 SINE B2 -23 172 9 7 1163 2845 157 12 29 chr11 75804117 75804629 -46039227 + RMER20A LTR ERVK 14 516 0 8 1163 584 347 40 36 chr11 75804716 75804994 -46038862 + LTR16C LTR ERVL 211 489 0 8 1163 279 291 8 91 chr11 75805156 75805172 -46038684 + MT2B2 LTR ERVL 149 154 -430 8 1163 565 248 49 14 chr11 75805172 75805315 -46038541 + B1F SINE Alu 2 149 0 8 1163 773 221 7 0 chr11 75805738 75805878 -46037978 - B1F SINE Alu 0 149 9 8 1163 180 290 76 48 chr11 75805997 75806008 -46037848 - L2 LINE L2 -1275 2144 2135 8 1163 268 355 47 0 chr11 75806008 75806115 -46037741 + PB1D10 SINE Alu 1 112 -5 8 1163 180 290 76 48 chr11 75806115 75806208 -46037648 - L2 LINE L2 -1285 2134 2037 8 1163 628 222 81 49 chr11 75806253 75806438 -46037418 + B3A SINE B2 3 193 -5 8 1163 462 36 0 0 chr11 75806472 75806528 -46037328 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1163 699 212 72 7 chr11 75806529 75806667 -46037189 + B1_Mur1 SINE Alu 3 149 0 8 1163 2075 197 23 64 chr11 75806689 75807124 -46036732 - MTD LTR MaLR -1 418 2 8 1163 1189 255 14 7 chr11 75807265 75807557 -46036299 + Lx8 LINE L1 7058 7351 -122 8 1163 763 261 16 33 chr11 75807562 75807789 -46036067 + B1_Mur3 SINE Alu 1 219 -95 8 1163 535 270 12 65 chr11 75808177 75808347 -46035509 - RSINE1 SINE B4 -1 164 4 8 1163 1190 61 0 20 chr11 75808368 75808518 -46035338 - B1_Mus1 SINE Alu 0 148 2 8 1163 1046 184 72 29 chr11 75808862 75809069 -46034787 + B3 SINE B2 1 216 0 8 1163 254 196 20 61 chr11 75809070 75809168 -46034688 + L1M2 LINE L1 4732 4825 -1318 8 1163 351 0 0 0 chr11 75809172 75809211 -46034645 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1163 501 148 178 0 chr11 75809243 75809344 -46034512 + PB1D7 SINE Alu 1 119 -1 8 1163 533 121 22 0 chr11 75809344 75809435 -46034421 + (GAAA)n Simple_repeat Simple_repeat 1 93 0 8 1163 427 357 89 4 chr11 75809481 75809706 -46034150 + L1M4 LINE L1 4954 5197 -949 8 1163 797 229 113 16 chr11 75809710 75809896 -46033960 + B3 SINE B2 2 205 -11 8 1163 1531 53 5 0 chr11 75809940 75810130 -46033726 - B2_Mm1t SINE B2 -2 191 1 8 1163 334 306 85 46 chr11 75810192 75810322 -46033534 + ID_B1 SINE B4 2 136 -88 8 1163 1249 183 110 26 chr11 75810320 75810584 -46033272 + ORR1B2 LTR MaLR 7 292 -75 8 1163 629 247 61 53 chr11 75810579 75810952 -46032904 + RLTR15 LTR ERVK 45 344 -15 8 1163 648 78 9 0 chr11 75810946 75811044 -46032812 + ORR1B2 LTR MaLR 282 394 0 8 1163 1250 51 0 48 chr11 75811071 75811237 -46032619 + B2_Mm2 SINE B2 1 158 -37 8 1163 216 0 0 0 chr11 75811238 75811262 -46032594 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 8 1163 450 171 26 0 chr11 75811296 75811372 -46032484 + ID_B1 SINE B4 143 220 -4 8 1163 219 186 0 0 chr11 75811378 75811421 -46032435 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1163 327 222 0 77 chr11 75811462 75811540 -46032316 + ID4_ SINE ID 2 73 -10 8 1163 359 305 0 47 chr11 75811602 75811688 -46032168 + RSINE1 SINE B4 84 165 0 8 1163 291 197 32 32 chr11 75811767 75811830 -46032026 - ID SINE ID -154 70 8 8 1163 918 223 15 41 chr11 75812027 75812223 -46031633 - ID_B1 SINE B4 -26 198 8 8 1163 1177 54 0 20 chr11 75812330 75812480 -46031376 - B1_Mm SINE Alu 0 147 1 8 1163 241 247 65 52 chr11 75812499 75812576 -46031280 - ID4 SINE ID -4 79 2 8 1163 559 231 81 0 chr11 75812624 75812767 -46031089 + B3A SINE B2 9 164 -52 8 1163 40 0 0 0 chr11 75812924 75812964 -46030892 + AT_rich Low_complexity Low_complexity 1 40 0 8 1163 599 197 39 39 chr11 75812983 75813110 -46030746 + B1F SINE Alu 1 127 -22 8 1163 429 257 34 42 chr11 75813145 75813263 -46030593 + PB1D10 SINE Alu 1 117 0 8 1163 204 97 0 0 chr11 75813602 75813633 -46030223 + (GGA)n Simple_repeat Simple_repeat 2 32 0 8 1163 192 77 0 0 chr11 75813718 75813744 -46030112 + (GAA)n Simple_repeat Simple_repeat 1 26 0 8 1163 210 143 0 0 chr11 75815397 75815432 -46028424 + (GGGAA)n Simple_repeat Simple_repeat 4 38 0 8 1163 767 236 65 33 chr11 75815473 75815688 -46028168 + ID_B1 SINE B4 2 223 -1 8 1163 1096 214 15 0 chr11 75815730 75815931 -46027925 + B3 SINE B2 1 204 -12 8 1163 232 309 85 12 chr11 75816134 75816216 -46027640 + MIRb SINE MIR 3 90 -178 8 1163 356 262 25 0 chr11 75816257 75816337 -46027519 + ID4_ SINE ID 2 83 0 8 1163 564 196 23 159 chr11 75817144 75817181 -46026675 + B3A SINE B2 1 37 -161 8 1163 1073 92 0 0 chr11 75817181 75817322 -46026534 + B1_Mus1 SINE Alu 2 142 -6 8 1163 564 196 23 159 chr11 75817322 75817460 -46026396 + B3A SINE B2 38 152 -46 8 1163 381 22 0 0 chr11 75817461 75817507 -46026349 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1163 311 0 0 25 chr11 75817770 75817810 -46026046 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1163 1109 52 7 0 chr11 75817810 75817945 -46025911 - B1_Mus2 SINE Alu -10 137 2 8 1163 255 289 0 0 chr11 75817945 75817997 -46025859 - B1_Mm SINE Alu -95 52 1 8 1163 702 243 92 6 chr11 75818062 75818236 -46025620 + B3 SINE B2 28 216 0 8 1163 856 176 0 7 chr11 75818268 75818405 -46025451 - B1_Mus2 SINE Alu -9 138 3 8 1163 414 0 0 0 chr11 75818537 75818583 -46025273 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1163 465 19 0 0 chr11 75818583 75818636 -46025220 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1163 490 191 190 9 chr11 75818737 75818853 -46025003 + B1_Mur2 SINE Alu 2 138 -11 8 1163 1039 196 50 5 chr11 75818966 75819166 -46024690 - B3 SINE B2 -7 209 1 8 1163 650 220 187 0 chr11 75819228 75819378 -46024478 - B3A SINE B2 -19 179 2 8 1163 589 241 29 7 chr11 75819396 75819534 -46024322 - B1F1 SINE Alu -8 141 1 8 1163 544 241 9 9 chr11 75819577 75819686 -46024170 + ID_B1 SINE B4 108 216 -8 8 1163 513 124 35 9 chr11 75819737 75819851 -46024005 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 8 1163 354 185 135 42 chr11 75820404 75820500 -46023356 - B1F2 SINE Alu 0 117 13 8 1163 1199 203 55 94 chr11 75820503 75820818 -46023038 + MTD LTR MaLR 2 295 -105 8 1163 319 342 103 39 chr11 75820945 75821179 -46022677 - MLT1K LTR MaLR 0 595 347 8 1163 373 256 44 0 chr11 75821517 75821607 -46022249 - B1F SINE Alu -41 108 15 8 1163 189 0 0 0 chr11 75821619 75821640 -46022216 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 8 1163 516 248 68 0 chr11 75822019 75822136 -46021720 + RSINE1 SINE B4 2 126 -39 8 1163 250 304 73 90 chr11 75822136 75822196 -46021660 + B2_Mm1t SINE B2 1 174 -19 8 1163 555 314 56 82 chr11 75822245 75822579 -46021277 + MLT1F2 LTR MaLR 188 631 -22 8 1163 235 270 60 192 chr11 75822610 75822728 -46021128 - B3 SINE B2 -13 203 1 8 1163 394 209 32 27 chr11 75822728 75822844 -46021012 - B4A SINE B4 -48 117 1 8 1163 469 198 22 9 chr11 75822851 75822951 -46020905 - PB1 SINE Alu -2 115 10 8 1163 245 297 13 39 chr11 75822885 75822962 -46020894 - ID_B1 SINE B4 -71 153 79 8 1163 1009 95 7 0 chr11 75823006 75823143 -46020713 - B1_Mus2 SINE Alu 0 147 10 8 1163 330 203 29 43 chr11 75823040 75823161 -46020695 - ORR1B1-int LTR MaLR -750 759 636 8 1163 788 166 244 17 chr11 75823161 75823333 -46020523 - B3 SINE B2 -4 212 2 8 1163 330 203 29 43 chr11 75823333 75823350 -46020506 - ORR1B1-int LTR MaLR -874 635 623 8 1163 1298 118 5 5 chr11 75823481 75823676 -46020180 - B2_Mm2 SINE B2 0 195 1 8 1163 611 287 0 13 chr11 75823750 75823902 -46019954 + B3 SINE B2 1 150 -66 8 1163 474 70 0 0 chr11 75823906 75823977 -46019879 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1163 669 208 33 46 chr11 75823981 75824132 -46019724 + B1_Mur1 SINE Alu 1 149 0 8 1163 500 256 8 46 chr11 75824279 75824410 -46019446 - RSINE1 SINE B4 -36 129 4 8 1163 211 271 144 56 chr11 75824733 75824823 -46019033 - MIRc SINE MIR -114 154 57 8 1163 290 276 64 76 chr11 75824906 75825063 -46018793 - MIRc SINE MIR -22 246 92 8 1163 4063 77 73 7 chr11 75825294 75825842 -46018014 + MT2B2 LTR ERVL 1 584 0 8 1163 941 182 69 23 chr11 75826015 75826189 -46017667 - B3 SINE B2 -34 182 1 8 1163 458 316 41 52 chr11 75826329 75826625 -46017231 + LTR40a LTR ERVL 15 315 -147 8 1163 298 289 113 113 chr11 75826742 75826910 -46016946 - MTEa LTR MaLR -173 206 39 8 1163 729 300 32 5 chr11 75826922 75827140 -46016716 - ID_B1 SINE B4 0 224 1 8 1163 644 185 91 56 chr11 75827288 75827431 -46016425 + B1_Mur1 SINE Alu 2 149 0 8 1163 721 131 88 51 chr11 75827434 75827571 -46016285 + B1_Mus2 SINE Alu 1 142 -5 8 1163 216 231 0 0 chr11 75827571 75827623 -46016233 + GA-rich Low_complexity Low_complexity 3 54 0 8 1163 440 222 50 10 chr11 75827649 75827749 -46016107 + PB1D10 SINE Alu 12 115 -2 8 1163 586 265 101 12 chr11 75827890 75828058 -46015798 + B3A SINE B2 1 183 -15 8 1163 519 205 129 88 chr11 75828090 75828270 -46015586 + ID_B1 SINE B4 1 221 -71 8 1163 314 318 32 19 chr11 75828375 75828529 -46015327 - L1M5 LINE L1 -381 5781 5626 8 1163 294 325 116 22 chr11 75828541 75828744 -46015112 - MIR SINE MIR 0 262 39 8 1163 911 149 7 20 chr11 75829218 75829369 -46014487 + B1_Mur3 SINE Alu 1 149 0 8 1163 768 227 49 26 chr11 75829406 75829601 -46014255 - B3A SINE B2 -24 192 1 8 1163 1101 198 9 19 chr11 75829620 75829831 -46014025 + B3 SINE B2 3 211 -5 9 1163 454 181 71 50 chr11 75829896 75829995 -46013861 - B3A SINE B2 -97 101 1 9 1163 350 267 89 0 chr11 75830229 75830319 -46013537 - PB1D10 SINE Alu -17 100 3 9 1163 634 127 143 18 chr11 75830361 75830473 -46013383 - B1_Mus1 SINE Alu -22 126 1 9 1163 251 203 0 15 chr11 75830623 75830688 -46013168 + CT-rich Low_complexity Low_complexity 1 64 0 9 1163 850 145 26 46 chr11 75830688 75830840 -46013016 - B1_Mur4 SINE Alu -1 149 1 9 1163 303 93 0 0 chr11 75830843 75830886 -46012970 + (TTA)n Simple_repeat Simple_repeat 3 45 0 9 1163 396 244 0 0 chr11 75830886 75830964 -46012892 - PB1D9 SINE Alu -15 105 28 9 1163 277 284 14 29 chr11 75831064 75831133 -46012723 + tRNA-Ala-GCA tRNA tRNA 2 69 -6 9 1163 428 251 0 16 chr11 75831279 75831461 -46012395 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1163 853 253 144 16 chr11 75831468 75831725 -46012131 - B4A SINE B4 0 292 3 9 1163 210 150 0 0 chr11 75831729 75831769 -46012087 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1163 1210 69 0 0 chr11 75831779 75831924 -46011932 - B1_Mus1 SINE Alu -2 146 2 9 1163 295 308 0 62 chr11 75831932 75832029 -46011827 - PB1D10 SINE Alu -6 111 21 9 1163 322 277 79 43 chr11 75832061 75832228 -46011628 + MER34A LTR ERV1 11 182 -405 9 1163 330 204 293 26 chr11 75832223 75832241 -46011615 + ID_B1 SINE B4 77 223 -1 9 1163 480 235 0 0 chr11 75832241 75832339 -46011517 + PB1D7 SINE Alu 22 119 -1 9 1163 585 250 0 32 chr11 75832515 75832639 -46011217 + B1_Mur1 SINE Alu 17 136 -13 9 1163 260 27 27 0 chr11 75832644 75832681 -46011175 + (CAA)n Simple_repeat Simple_repeat 2 39 0 9 1163 186 71 0 0 chr11 75834731 75834759 -46009097 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1163 342 0 0 0 chr11 75835132 75835170 -46008686 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1163 1525 32 21 16 chr11 75835911 75836102 -46007754 - B2_Mm1a SINE B2 0 193 2 9 1163 540 89 0 0 chr11 75836207 75836286 -46007570 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 9 1163 273 274 27 0 chr11 75836301 75836374 -46007482 - ID4_ SINE ID -7 76 2 9 1163 1550 183 146 14 chr11 75836724 75837074 -46006782 + MTD LTR MaLR 13 408 -11 9 1163 316 319 8 33 chr11 75837424 75837544 -46006312 - PB1D10 SINE Alu 0 117 1 9 1163 421 263 32 55 chr11 75838145 75838274 -46005582 + B1F1 SINE Alu 15 140 -9 9 1163 216 162 0 0 chr11 75841608 75841645 -46002211 + G-rich Low_complexity Low_complexity 1 37 0 9 1163 282 56 0 0 chr11 75842119 75842155 -46001701 + (TTTCC)n Simple_repeat Simple_repeat 1 36 0 9 1163 360 161 0 0 chr11 75842155 75842211 -46001645 + CT-rich Low_complexity Low_complexity 1 56 0 9 1163 435 38 0 0 chr11 75842216 75842269 -46001587 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 9 1163 432 0 0 0 chr11 75842407 75842455 -46001401 + (TA)n Simple_repeat Simple_repeat 2 49 0 9 1163 879 37 0 0 chr11 75843477 75843584 -46000272 + (TCCC)n Simple_repeat Simple_repeat 4 110 0 9 1163 414 173 17 148 chr11 75843922 75844037 -45999819 + MT2B LTR ERVL 158 257 -344 9 1163 895 119 7 7 chr11 75843945 75844080 -45999776 + B1_Mur3 SINE Alu 13 147 -2 9 1163 397 202 12 71 chr11 75844091 75844176 -45999680 - PB1D7 SINE Alu -40 80 1 9 1163 244 234 106 30 chr11 75844265 75844331 -45999525 + B1F1 SINE Alu 79 149 0 9 1163 474 263 4 130 chr11 75845056 75845162 -45998694 + ID_B1 SINE B4 64 148 -76 9 1163 640 216 235 0 chr11 75845162 75845324 -45998532 + B3 SINE B2 3 202 -14 9 1163 231 125 0 0 chr11 75845327 75845367 -45998489 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1163 474 229 0 181 chr11 75845367 75845432 -45998424 + ID_B1 SINE B4 149 209 -15 9 1163 237 196 0 0 chr11 75845587 75845638 -45998218 + A-rich Low_complexity Low_complexity 1 51 0 9 1163 806 152 32 65 chr11 75846420 75846575 -45997281 + B3 SINE B2 1 150 -66 9 1163 266 297 45 90 chr11 75846620 75846731 -45997125 - B1_Mm SINE Alu -41 106 1 9 1163 490 202 0 60 chr11 75846635 75846735 -45997121 - ID_B1 SINE B4 -53 171 78 9 1163 400 228 60 26 chr11 75846758 75846875 -45996981 - B3 SINE B2 0 216 96 9 1163 1005 225 43 5 chr11 75847133 75847343 -45996513 + ID_B1 SINE B4 2 219 -5 9 1163 419 263 71 98 chr11 75847681 75847907 -45995949 - B4A SINE B4 0 224 7 9 1163 700 127 1 30 chr11 75847918 75848042 -45995814 - B1_Mur1 SINE Alu 0 149 29 9 1163 303 232 88 132 chr11 75848014 75848128 -45995728 + PB1D10 SINE Alu 17 125 -2 9 1163 524 341 0 12 chr11 75848131 75848297 -45995559 + RSINE1 SINE B4 2 165 0 9 1163 2008 144 40 108 chr11 75849424 75849822 -45994034 + ORR1C1 LTR MaLR 1 371 -7 9 1163 331 292 86 34 chr11 75850147 75850259 -45993597 - ID_B1 SINE B4 -16 208 91 9 1163 891 240 10 39 chr11 75850259 75850463 -45993393 + B3A SINE B2 1 198 0 9 1163 360 64 0 0 chr11 75850525 75850572 -45993284 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 1163 1157 107 0 0 chr11 75850572 75850731 -45993125 - B2_Mm2 SINE B2 -36 159 1 9 1163 342 329 12 0 chr11 75850735 75850820 -45993036 - ID SINE ID -137 87 2 9 1163 632 195 117 33 chr11 75850982 75851162 -45992694 - B2_Mm2 SINE B2 0 195 1 9 1163 251 256 29 135 chr11 75851202 75851306 -45992550 + PB1D10 SINE Alu 6 98 -19 9 1163 417 86 0 0 chr11 75851315 75851373 -45992483 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1163 260 229 27 41 chr11 75851385 75851458 -45992398 + RSINE1 SINE B4 11 82 -83 9 1163 247 279 130 87 chr11 75851534 75851695 -45992161 + B4A SINE B4 114 281 -11 9 1163 414 0 0 0 chr11 75851717 75851763 -45992093 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1163 1068 8 0 0 chr11 75851798 75851919 -45991937 + (TTTCC)n Simple_repeat Simple_repeat 5 125 0 9 1163 694 128 34 17 chr11 75851919 75852038 -45991818 - B1_Mus2 SINE Alu -26 121 1 9 1163 459 245 107 50 chr11 75852038 75852092 -45991764 - B4 SINE B4 -199 93 31 9 1163 747 203 58 0 chr11 75852175 75852313 -45991543 - B1_Mur3 SINE Alu -2 147 2 9 1163 537 183 159 51 chr11 75852370 75852508 -45991348 - B3 SINE B2 -59 157 5 9 1163 516 244 67 0 chr11 75853002 75853121 -45990735 + RSINE1 SINE B4 3 129 -36 9 1163 402 296 11 2 chr11 75853202 75853305 -45990551 + B1F SINE Alu 13 115 -5 9 1163 701 152 0 33 chr11 75853312 75853434 -45990422 + B3 SINE B2 2 119 -97 9 1163 396 0 0 0 chr11 75853434 75853478 -45990378 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1163 207 160 40 0 chr11 75853530 75853580 -45990276 + T-rich Low_complexity Low_complexity 2 53 0 9 1163 1146 29 0 14 chr11 75853583 75853725 -45990131 - B1_Mus2 SINE Alu 0 147 8 9 1163 273 325 0 0 chr11 75854217 75854297 -45989559 - PB1D10 SINE Alu -36 81 2 9 1163 565 218 39 24 chr11 75855106 75855233 -45988623 - B1F SINE Alu -1 148 20 9 1163 487 266 62 35 chr11 75855198 75855342 -45988514 + ID_B1 SINE B4 66 213 -11 9 1163 216 0 0 0 chr11 75855344 75855368 -45988488 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1163 272 243 29 93 chr11 75855392 75855572 -45988284 - MIR SINE MIR -109 159 1 9 1163 601 254 49 0 chr11 75857004 75857146 -45986710 - B1_Mur1 SINE Alu 0 149 1 9 1163 395 301 51 25 chr11 75857286 75857443 -45986413 + MER2 DNA MER2_type 1 161 -184 9 1163 321 201 112 25 chr11 75857446 75857548 -45986308 + B1F SINE Alu 3 149 0 9 1163 635 296 55 15 chr11 75857565 75857767 -45986089 + MER2 DNA MER2_type 136 345 0 9 1163 206 233 23 0 chr11 75860465 75860508 -45983348 + MER5A DNA MER1_type 112 155 -34 9 1163 261 0 0 0 chr11 75862504 75862533 -45981323 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 9 1163 762 185 224 6 chr11 75862535 75862709 -45981147 + B3 SINE B2 4 215 -1 9 1163 352 339 123 18 chr11 75862788 75863016 -45980840 - L1M5 LINE L1 -460 5664 5413 9 1163 1276 21 7 0 chr11 75863402 75863547 -45980309 + B1_Mm SINE Alu 2 147 0 9 1163 501 308 31 79 chr11 75864103 75864433 -45979423 - B4 SINE B4 -12 280 1 9 1163 759 236 109 18 chr11 75864526 75864746 -45979110 - B4A SINE B4 0 292 53 9 1163 218 299 111 111 chr11 75864908 75864950 -45978906 + B4A SINE B4 66 224 -65 9 1163 581 233 17 8 chr11 75864950 75865067 -45978789 + PB1 SINE Alu 8 125 -2 9 1163 23 0 0 0 chr11 75865130 75865153 -45978703 + AT_rich Low_complexity Low_complexity 1 23 0 9 1163 893 169 0 0 chr11 75865153 75865295 -45978561 - B1_Mur1 SINE Alu 0 149 8 9 1163 641 249 77 20 chr11 75865297 75865472 -45978384 - B3A SINE B2 -13 182 1 9 1163 248 234 62 0 chr11 75865676 75865740 -45978116 + tRNA-Ala-GCY_ tRNA tRNA 3 70 -5 9 1163 239 239 53 53 chr11 75865740 75865751 -45978105 + ID4_ SINE ID 9 83 0 9 1163 389 250 99 23 chr11 75865860 75865991 -45977865 + B1_Mur2 SINE Alu 1 141 -8 9 1163 502 333 70 98 chr11 75866043 75866102 -45977754 - ORR1E LTR MaLR 0 359 297 9 1163 2358 84 169 8 chr11 75866102 75866464 -45977392 + RLTR9B2 LTR ERVK 1 420 0 9 1163 502 333 70 98 chr11 75866464 75866773 -45977083 - ORR1E LTR MaLR -63 296 1 9 1163 503 299 68 32 chr11 75866815 75867154 -45976702 + L1ME3B LINE L1 5724 6074 -166 9 1163 372 242 74 0 chr11 75867905 75868000 -45975856 - B1F SINE Alu -11 138 37 9 1163 312 287 44 53 chr11 75868122 75868236 -45975620 - PB1D10 SINE Alu 0 117 5 9 1163 1154 188 64 10 chr11 75868273 75868477 -45975379 + B3 SINE B2 2 216 0 1 1163 684 166 17 162 chr11 75868657 75868830 -45975026 - B1_Mur2 SINE Alu 0 149 2 1 1163 602 238 47 108 chr11 75868879 75869054 -45974802 - B3A SINE B2 -15 201 35 1 1163 1559 32 27 0 chr11 75869054 75869242 -45974614 - B2_Mm1a SINE B2 0 193 1 1 1163 602 233 49 109 chr11 75869242 75869271 -45974585 - B3A SINE B2 -164 34 11 1 1163 329 216 54 0 chr11 75869806 75869880 -45973976 + ID4_ SINE ID 1 78 -5 1 1163 284 264 68 11 chr11 75869880 75869894 -45973962 + ID_B1 SINE B4 1 93 -131 1 1163 23 78 0 0 chr11 75870385 75870436 -45973420 + AT_rich Low_complexity Low_complexity 1 51 0 1 1163 1261 34 0 0 chr11 75870472 75870618 -45973238 - B1_Mus2 SINE Alu 0 147 2 1 1163 860 184 7 0 chr11 75870618 75870753 -45973103 - B1_Mus1 SINE Alu -11 137 1 1 1163 492 237 11 0 chr11 75870822 75870915 -45972941 - ID_B1 SINE B4 -8 216 123 1 1163 357 304 61 46 chr11 75870915 75870953 -45972903 - B1F SINE Alu -8 141 9 1 1163 626 275 7 47 chr11 75871043 75871062 -45972794 - B1_Mur3 SINE Alu -5 144 129 1 1163 345 102 0 0 chr11 75871062 75871121 -45972735 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 1163 703 266 0 0 chr11 75871121 75871250 -45972606 - B1_Mur1 SINE Alu -20 129 2 1 1163 741 277 48 11 chr11 75871265 75871451 -45972405 - B3 SINE B2 -17 199 7 1 1163 278 374 0 0 chr11 75871825 75871908 -45971948 - ID4 SINE ID 0 83 1 1 1163 246 299 0 146 chr11 75871921 75872058 -45971798 + PB1D10 SINE Alu 1 117 0 1 1163 357 24 0 0 chr11 75872748 75872790 -45971066 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1163 297 0 0 0 chr11 75872790 75872822 -45971034 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1163 249 241 0 49 chr11 75872845 75872906 -45970950 - B3A SINE B2 -140 58 1 1 1163 380 282 9 55 chr11 75873241 75873350 -45970506 - PB1D10 SINE Alu 0 117 14 1 1163 461 243 53 26 chr11 75874076 75874190 -45969666 - PB1D10 SINE Alu 0 117 1 1 1163 215 288 0 17 chr11 75874139 75874199 -45969657 - B4 SINE B4 -157 135 77 1 1163 197 338 54 0 chr11 75874199 75874273 -45969583 - MIRb SINE MIR -77 191 114 1 1163 637 224 151 0 chr11 75874750 75874902 -45968954 - B4A SINE B4 -4 288 114 1 1163 713 279 27 76 chr11 75874915 75875140 -45968716 - B3A SINE B2 -1 215 2 1 1163 1792 181 108 32 chr11 75875195 75875566 -45968290 + MTD LTR MaLR 2 400 -19 1 1163 1332 89 10 16 chr11 75875589 75875782 -45968074 - B2_Mm1t SINE B2 0 193 2 1 1163 427 260 19 28 chr11 75875929 75876036 -45967820 - PB1D10 SINE Alu -5 112 7 1 1163 255 259 0 49 chr11 75876281 75876342 -45967514 + ID_B1 SINE B4 166 223 -1 1 1163 399 186 14 0 chr11 75876797 75876867 -45966989 - ID4_ SINE ID -11 72 2 1 1163 813 223 5 96 chr11 75877154 75877362 -45966494 - B3A SINE B2 -3 195 7 1 1163 901 147 35 7 chr11 75877440 75877584 -45966272 + B1_Mur2 SINE Alu 2 149 0 1 1163 968 33 0 0 chr11 75877830 75877950 -45965906 + B1_Mus2 SINE Alu 8 127 -20 1 1163 528 209 15 22 chr11 75877950 75877967 -45965889 + ID_B1 SINE B4 89 224 0 1 1163 1172 131 17 0 chr11 75880709 75880885 -45962971 + URR1A DNA MER1_type 48 226 0 1 1163 842 212 7 0 chr11 75881076 75881222 -45962634 - B1F SINE Alu -2 147 1 1 1163 271 306 8 107 chr11 75881298 75881319 -45962537 + MT2B LTR ERVL 147 255 -346 1 1163 615 200 0 0 chr11 75881319 75881419 -45962437 + B1_Mur2 SINE Alu 3 102 -47 1 1163 306 132 0 0 chr11 75881426 75881479 -45962377 + (CTA)n Simple_repeat Simple_repeat 3 55 0 1 1163 342 0 0 0 chr11 75881483 75881521 -45962335 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1163 430 17 0 33 chr11 75881526 75881587 -45962269 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 1 1163 231 265 47 35 chr11 75881871 75881957 -45961899 - B3 SINE B2 -129 87 1 1 1163 410 226 8 65 chr11 75882010 75882133 -45961723 + PB1D10 SINE Alu 1 116 -1 1 1163 1117 92 28 27 chr11 75882138 75882385 -45961471 + B2_Mm2 SINE B2 2 181 -12 1 1163 363 88 313 26 chr11 75882449 75882564 -45961292 + B2_Mm2 SINE B2 47 194 -1 1 1163 751 253 0 26 chr11 75882627 75882781 -45961075 + RSINE1 SINE B4 3 152 -13 1 1163 25 0 0 0 chr11 75882793 75882818 -45961038 + AT_rich Low_complexity Low_complexity 1 25 0 1 1163 1245 35 7 0 chr11 75882840 75882985 -45960871 + B1_Mm SINE Alu 2 147 0 1 1163 22 35 0 0 chr11 75883009 75883038 -45960818 + AT_rich Low_complexity Low_complexity 1 29 0 1 1163 410 307 0 10 chr11 75883077 75883179 -45960677 - PB1 SINE Alu -9 118 18 1 1163 243 0 0 0 chr11 75883188 75883215 -45960641 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1163 243 0 0 0 chr11 75883895 75883922 -45959934 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1163 604 232 183 0 chr11 75883940 75884082 -45959774 - B4 SINE B4 -1 291 124 1 1163 738 225 14 0 chr11 75884229 75884371 -45959485 - B1F1 SINE Alu -4 145 2 1 1163 592 173 77 0 chr11 75884503 75884607 -45959249 - PB1D9 SINE Alu -6 114 3 1 1163 336 222 19 126 chr11 75885183 75885286 -45958570 + MT2B LTR ERVL 167 258 -343 1 1163 782 154 15 37 chr11 75885197 75885332 -45958524 + B1_Mur2 SINE Alu 17 148 -1 1 1163 300 27 0 0 chr11 75885752 75885789 -45958067 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1163 496 269 163 18 chr11 75885816 75886214 -45957642 + L1MB7 LINE L1 5275 5739 -435 1 1163 508 318 8 123 chr11 75886248 75886345 -45957511 + ID_B1 SINE B4 1 221 -2 1 1163 685 186 26 85 chr11 75886345 75886498 -45957358 + B1_Mur2 SINE Alu 6 149 0 1 1163 312 306 81 15 chr11 75886607 75886743 -45957113 + L1MB7 LINE L1 5935 6079 -105 1 1163 646 236 72 54 chr11 75886796 75886962 -45956894 + MTD LTR MaLR 251 419 0 1 1163 575 313 56 14 chr11 75889016 75889230 -45954626 - MER58A DNA MER1_type -1 223 1 1 1163 540 216 18 18 chr11 75889335 75889448 -45954408 - PB1D10 SINE Alu 0 117 5 1 1163 372 232 0 0 chr11 75890312 75890411 -45953445 + GA-rich Low_complexity Low_complexity 3 101 0 1 1164 441 284 84 7 chr11 75890900 75891042 -45952814 + ORR1E LTR MaLR 22 174 -185 1 1164 247 351 88 15 chr11 75892173 75892269 -45951587 + B1F SINE Alu 1 107 -42 1 1164 798 152 7 92 chr11 75892269 75892421 -45951435 + B1_Mur3 SINE Alu 1 139 -10 1 1164 247 351 88 15 chr11 75892421 75892460 -45951396 + B1F SINE Alu 108 146 -3 1 1164 500 56 0 27 chr11 75892461 75892534 -45951322 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 1 1164 243 221 70 42 chr11 75892754 75892825 -45951031 - ID4_ SINE ID -9 74 2 1 1164 1399 91 0 5 chr11 75892917 75893104 -45950752 + B2_Mm2 SINE B2 1 186 -9 1 1164 1206 171 19 9 chr11 75893278 75893490 -45950366 - B3 SINE B2 -2 214 1 1 1164 232 156 133 0 chr11 75893490 75893535 -45950321 - PB1 SINE Alu 0 127 77 1 1164 473 175 38 0 chr11 75893497 75893577 -45950279 - ID_B1 SINE B4 -8 216 134 1 1164 388 190 59 20 chr11 75893675 75893777 -45950079 + PB1D9 SINE Alu 5 110 -10 1 1164 764 293 26 4 chr11 75895236 75895503 -45948353 - B4A SINE B4 -19 273 1 1 1164 1183 74 0 0 chr11 75896351 75896499 -45947357 + B1_Mus1 SINE Alu 1 148 0 1 1164 279 0 0 0 chr11 75896499 75896530 -45947326 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1164 202 298 132 66 chr11 75896788 75896939 -45946917 - MIR SINE MIR -12 250 90 1 1164 342 275 38 0 chr11 75897875 75897955 -45945901 - B1F1 SINE Alu -66 83 1 1 1164 492 261 9 0 chr11 75897962 75898077 -45945779 - PB1D10 SINE Alu -1 116 1 1 1164 356 155 14 0 chr11 75898461 75898532 -45945324 + GA-rich Low_complexity Low_complexity 2 73 0 1 1164 321 242 132 0 chr11 75899277 75899368 -45944488 + ID_B1 SINE B4 121 223 -1 1 1164 1072 206 34 0 chr11 75899505 75899714 -45944142 - B3 SINE B2 0 216 1 1 1164 189 299 148 9 chr11 75899810 75899918 -45943938 - MIR3 SINE MIR -46 162 40 1 1164 623 282 112 12 chr11 75900398 75900890 -45942966 + L1MC4 LINE L1 6397 7005 -1037 1 1164 356 318 18 27 chr11 75900970 75901080 -45942776 - PB1D10 SINE Alu -2 115 7 1 1164 222 37 0 0 chr11 75901205 75901232 -45942624 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1164 269 302 34 34 chr11 75901232 75901311 -45942545 + B1F SINE Alu 69 148 -1 1 1164 309 26 0 0 chr11 75901463 75901501 -45942355 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1164 265 246 30 15 chr11 75901517 75901583 -45942273 - B3 SINE B2 -135 81 15 1 1164 236 324 28 0 chr11 75901629 75901700 -45942156 - ID4_ SINE ID -10 73 1 1 1164 706 192 87 43 chr11 75901703 75901888 -45941968 - B3A SINE B2 -4 194 2 1 1164 305 339 37 8 chr11 75902625 75902786 -45941070 - MIRc SINE MIR -84 184 13 1 1164 277 235 147 0 chr11 75903006 75903074 -45940782 - ID4_ SINE ID -4 79 2 1 1164 524 203 24 16 chr11 75903085 75903210 -45940646 - B1F SINE Alu -3 146 21 1 1164 971 262 23 63 chr11 75903658 75903885 -45939971 + B4 SINE B4 3 227 -65 1 1164 1387 87 5 11 chr11 75903885 75904072 -45939784 + B2_Mm2 SINE B2 3 188 -7 1 1164 971 262 23 63 chr11 75904072 75904145 -45939711 + B4 SINE B4 228 291 -1 1 1164 381 43 0 0 chr11 75904401 75904448 -45939408 + (CAT)n Simple_repeat Simple_repeat 2 48 0 1 1164 333 0 0 0 chr11 75904448 75904484 -45939372 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 1164 320 276 61 10 chr11 75904640 75904739 -45939117 - PB1D9 SINE Alu 0 120 17 1 1164 479 174 54 11 chr11 75904799 75904892 -45938964 + PB1 SINE Alu 24 120 -7 1 1164 226 298 37 79 chr11 75904958 75905122 -45938734 + L1MC4a LINE L1 7487 7643 -239 1 1164 605 139 12 0 chr11 75905447 75905533 -45938323 + PB1D9 SINE Alu 7 93 -27 1 1164 444 19 0 0 chr11 75905541 75905594 -45938262 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 1 1164 286 250 50 0 chr11 75906690 75906750 -45937106 - ID4 SINE ID 0 83 21 1 1164 332 294 92 0 chr11 75906786 75906895 -45936961 + PB1D7 SINE Alu 1 119 -1 1 1164 242 234 18 127 chr11 75906915 75907081 -45936775 + RMER17D LTR ERVK 240 387 -502 1 1164 19072 55 36 24 chr11 75907446 75910430 -45933426 + L1VL4 LINE L1 391 3417 -142 1 1164 1264 59 107 0 chr11 75910430 75910585 -45933271 + B2_Mm1a SINE B2 2 160 -33 1 1164 351 0 0 0 chr11 75910585 75910624 -45933232 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1164 1264 59 107 0 chr11 75910624 75910637 -45933219 + B2_Mm1a SINE B2 161 186 -7 1 1164 19072 51 42 16 chr11 75910637 75910783 -45933073 + L1VL4 LINE L1 3418 3555 -4 1 1164 351 255 81 9 chr11 75910807 75910918 -45932938 + PB1D9 SINE Alu 1 119 -1 1 1164 442 237 123 0 chr11 75910923 75911037 -45932819 + RSINE1 SINE B4 3 130 -35 1 1164 21 0 0 0 chr11 75911092 75911113 -45932743 + AT_rich Low_complexity Low_complexity 1 21 0 1 1164 756 158 158 0 chr11 75911219 75911346 -45932510 + B1_Mur3 SINE Alu 1 147 -2 1 1164 28 29 0 0 chr11 75911347 75911382 -45932474 + AT_rich Low_complexity Low_complexity 1 35 0 1 1164 443 216 23 0 chr11 75911382 75911470 -45932386 + PB1D9 SINE Alu 2 91 -29 1 1164 222 208 0 0 chr11 75911924 75911977 -45931879 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1164 272 266 60 144 chr11 75911977 75912002 -45931854 - RSINE1 SINE B4 0 165 142 1 1164 414 0 0 0 chr11 75912002 75912048 -45931808 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1164 272 266 60 144 chr11 75912048 75912189 -45931667 - RSINE1 SINE B4 -24 141 13 1 1164 474 264 78 18 chr11 75912237 75912403 -45931453 + Kanga1d DNA Tc2 314 489 -120 1 1164 285 29 0 0 chr11 75913538 75913572 -45930284 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1164 324 284 199 35 chr11 75914431 75914642 -45929214 + MIRc SINE MIR 15 255 -13 1 1164 440 198 23 7 chr11 75915797 75915902 -45927954 - B1_Mur2 SINE Alu 0 149 40 1 1164 182 388 12 0 chr11 75915902 75915982 -45927874 + L2c LINE L2 3105 3185 -202 1 1164 332 297 227 41 chr11 75916013 75916185 -45927671 + B4 SINE B4 84 287 -5 1 1164 180 200 0 0 chr11 75916188 75916238 -45927618 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1164 1557 177 24 3 chr11 75916533 75916822 -45927034 - RLTR11A2 LTR ERVK 0 527 233 1 1164 306 0 0 0 chr11 75917109 75917143 -45926713 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1164 450 0 0 0 chr11 75917143 75917192 -45926664 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1164 297 300 41 41 chr11 75917235 75917381 -45926475 + B1F SINE Alu 2 147 -2 1 1164 285 295 44 33 chr11 75917567 75917658 -45926198 + PB1 SINE Alu 36 127 0 1 1164 243 220 16 48 chr11 75917683 75917745 -45926111 + ID4_ SINE ID 4 63 -20 1 1164 304 230 40 0 chr11 75917708 75917782 -45926074 + B1F SINE Alu 67 143 -6 1 1164 334 210 0 0 chr11 75917725 75917787 -45926069 + ID_B1 SINE B4 162 223 -1 1 1164 450 162 50 0 chr11 75918965 75919045 -45924811 - PB1 SINE Alu -18 109 26 1 1164 655 288 19 6 chr11 75919083 75919211 -45924645 + RSINE1 SINE B4 7 136 -29 1 1164 468 0 0 0 chr11 75919211 75919263 -45924593 + (CAAG)n Simple_repeat Simple_repeat 3 54 0 1 1164 655 288 19 6 chr11 75919263 75919291 -45924565 + RSINE1 SINE B4 137 165 0 1 1164 209 324 0 27 chr11 75919465 75919538 -45924318 + G-rich Low_complexity Low_complexity 4 74 0 1 1164 207 209 55 82 chr11 75919585 75919658 -45924198 + MIR SINE MIR 4 74 -188 1 1164 249 235 14 68 chr11 75919803 75919876 -45923980 - PB1D10 SINE Alu -1 116 48 1 1164 513 231 3 42 chr11 75921213 75921329 -45922527 + ID_B1 SINE B4 77 181 -43 1 1164 487 65 0 0 chr11 75921632 75921694 -45922162 - ORR1A3 LTR MaLR -2 324 263 1 1164 239 152 22 0 chr11 75921691 75921737 -45922119 + URR1B DNA MER1_type 173 219 -6 1 1164 574 245 43 105 chr11 75921766 75921976 -45921880 + B3 SINE B2 20 216 0 1 1164 335 288 54 0 chr11 75922190 75922301 -45921555 + PB1D10 SINE Alu 1 117 0 1 1164 242 226 5 100 chr11 75923957 75924056 -45919800 - ID4 SINE ID -43 109 17 1 1164 372 43 0 0 chr11 75924067 75924113 -45919743 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1164 1138 75 7 0 chr11 75924212 75924358 -45919498 - B1_Mus1 SINE Alu 0 148 2 1 1164 1478 84 5 0 chr11 75924413 75924604 -45919252 - B2_Mm1a SINE B2 -1 192 1 1 1164 1417 78 11 0 chr11 75924604 75924795 -45919061 - B2_Mm1t SINE B2 0 193 1 1 1164 588 244 106 6 chr11 75924814 75924975 -45918881 + ORR1D2 LTR MaLR 3 179 -191 1 1164 237 214 137 63 chr11 75924900 75924995 -45918861 + RMER12 LTR ERVK 62 163 -1159 1 1164 2422 164 10 15 chr11 75925005 75925414 -45918442 + MTB_Mm LTR MaLR 1 407 0 1 1164 499 232 47 31 chr11 75925416 75925545 -45918311 + ORR1D2 LTR MaLR 235 365 -5 1 1164 24 0 0 0 chr11 75925592 75925616 -45918240 + AT_rich Low_complexity Low_complexity 1 24 0 1 1164 1225 40 20 0 chr11 75925626 75925778 -45918078 + B2_Mm1a SINE B2 2 156 -37 1 1164 207 0 0 0 chr11 75925778 75925801 -45918055 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1 1164 282 305 26 71 chr11 75925868 75925882 -45917974 - B1_Mur4 SINE Alu -7 143 36 1 1164 527 202 91 0 chr11 75925882 75925981 -45917875 - ID_B1 SINE B4 -1 223 116 1 1164 1218 48 0 13 chr11 75926804 75926953 -45916903 - B1_Mus1 SINE Alu -1 147 1 1 1164 273 261 14 0 chr11 75927278 75927347 -45916509 + FLAM_A SINE Alu 7 76 -219 1 1164 891 206 103 0 chr11 75927643 75927837 -45916019 + B3 SINE B2 2 215 -1 1 1164 726 259 98 5 chr11 75927971 75928165 -45915691 - Tigger7 DNA MER2_type -4 2487 2276 1 1164 1186 72 96 0 chr11 75928293 75928459 -45915397 - B2_Mm2 SINE B2 -9 186 5 1 1164 678 234 36 14 chr11 75928494 75928633 -45915223 - B1_Mur2 SINE Alu -2 147 6 1 1164 400 250 42 105 chr11 75928519 75928662 -45915194 - MT2B LTR ERVL -323 278 145 1 1164 356 154 31 0 chr11 75929263 75929328 -45914528 + B3 SINE B2 148 214 -2 1 1164 346 271 126 30 chr11 75929380 75929578 -45914278 + L1MC1 LINE L1 6112 6328 -5 1 1164 405 224 0 0 chr11 75929674 75929741 -45914115 + ID2 SINE ID 8 74 -9 1 1164 212 346 0 0 chr11 75929748 75929826 -45914030 + GA-rich Low_complexity Low_complexity 1 78 0 1 1164 447 290 25 6 chr11 75930837 75931000 -45912856 + Charlie4z DNA MER1_type 1 166 -1 1 1164 571 243 0 0 chr11 75931735 75931842 -45912014 - PB1D10 SINE Alu -10 107 1 1 1164 183 149 80 60 chr11 75932191 75932241 -45911615 + MIRc SINE MIR 22 72 -196 1 1164 788 181 143 237 chr11 75932494 75932764 -45911092 - ORR1D1 LTR MaLR 0 374 153 1 1164 1238 41 0 7 chr11 75932764 75932911 -45910945 - B1_Mus2 SINE Alu 0 147 2 1 1164 788 181 143 237 chr11 75932911 75933053 -45910803 - ORR1D1 LTR MaLR -222 152 1 1 1164 493 209 68 108 chr11 75933085 75933266 -45910590 - B1F SINE Alu -2 147 10 1 1164 24 32 0 0 chr11 75934472 75934503 -45909353 + AT_rich Low_complexity Low_complexity 1 31 0 1 1164 927 213 37 23 chr11 75934593 75934809 -45909047 - ID_B1 SINE B4 -3 221 3 1 1164 385 229 28 19 chr11 75935296 75935403 -45908453 - BC1_Mm scRNA scRNA -43 109 2 1 1164 30 45 0 0 chr11 75935601 75935645 -45908211 + AT_rich Low_complexity Low_complexity 1 44 0 1 1164 321 216 43 43 chr11 75935742 75935834 -45908022 + PB1D10 SINE Alu 26 117 0 1 1164 661 250 0 0 chr11 75937705 75937829 -45906027 - B1_Mur1 SINE Alu -16 133 10 1 1164 550 235 8 16 chr11 75937997 75938118 -45905738 + PB1D9 SINE Alu 1 120 0 1 1164 455 222 333 18 chr11 75939310 75939475 -45904381 + URR1A DNA MER1_type 9 225 -1 1 1164 298 247 296 65 chr11 75939563 75939732 -45904124 - B3 SINE B2 -5 211 4 1 1164 225 139 0 0 chr11 75939784 75939827 -45904029 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1164 361 234 135 39 chr11 75939830 75940008 -45903848 + L1MA9 LINE L1 5106 5300 -840 1 1164 735 209 141 10 chr11 75940018 75940216 -45903640 + ID_B1 SINE B4 1 224 0 1 1164 526 290 8 0 chr11 75940300 75940424 -45903432 + RSINE1 SINE B4 28 152 -13 1 1164 7530 37 3 0 chr11 75940477 75941364 -45902492 + L1Md_T LINE L1 5693 6582 0 1 1164 353 219 25 58 chr11 75941364 75941485 -45902371 + L1MA9 LINE L1 5317 5433 -756 1 1164 839 182 28 0 chr11 75941496 75941639 -45902217 + B1_Mur2 SINE Alu 2 148 -1 1 1164 1720 26 0 0 chr11 75941672 75941865 -45901991 + B2_Mm1a SINE B2 1 193 0 1 1164 385 249 195 24 chr11 75941881 75942050 -45901806 + B3A SINE B2 1 198 0 1 1164 7846 156 19 19 chr11 75942058 75943442 -45900414 + Lx3C LINE L1 5591 6974 -2 1 1164 448 220 56 28 chr11 75943468 75943646 -45900210 + RMER17C LTR ERVK 91 273 -137 1 1164 199 115 38 19 chr11 75943646 75943699 -45900157 + A-rich Low_complexity Low_complexity 4 57 0 1 1164 1084 250 125 19 chr11 75943782 75944247 -45899609 + L1MA9 LINE L1 5438 5951 -361 1 1164 608 268 29 17 chr11 75944911 75945086 -45898770 + B3A SINE B2 4 180 -18 1 1164 279 0 0 0 chr11 75945473 75945504 -45898352 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 1164 578 195 8 33 chr11 75945979 75946101 -45897755 + PB1D9 SINE Alu 1 119 -1 1 1164 232 269 92 8 chr11 75946145 75946276 -45897580 + L1MD LINE L1 5389 5530 -829 1 1164 384 315 9 9 chr11 75946656 75946768 -45897088 - PB1D7 SINE Alu -8 112 1 1 1164 1098 77 13 0 chr11 75947071 75947227 -45896629 + B2_Mm2 SINE B2 1 158 -37 1 1164 492 319 174 0 chr11 75947448 75947689 -45896167 + MLT1G1 LTR MaLR 228 510 -69 1 1164 411 21 0 0 chr11 75948315 75948363 -45895493 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1164 311 250 0 50 chr11 75949456 75949536 -45894320 - ID4_ SINE ID -6 77 2 1 1164 487 186 87 17 chr11 75950037 75950152 -45893704 + B1_Mm SINE Alu 2 124 -23 1 1164 321 26 0 0 chr11 75950161 75950199 -45893657 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1164 773 167 29 0 chr11 75950201 75950339 -45893517 - B1_Mus1 SINE Alu -1 147 6 1 1164 644 206 119 96 chr11 75950391 75950568 -45893288 - B3A SINE B2 -14 181 1 1 1164 1397 85 26 0 chr11 75950574 75950763 -45893093 - B2_Mm2 SINE B2 -1 194 1 1 1164 431 175 175 0 chr11 75950877 75950980 -45892876 - B3 SINE B2 -6 210 90 1 1164 442 168 58 29 chr11 75951069 75951173 -45892683 + B1_Mur2 SINE Alu 43 149 0 1 1164 679 243 14 7 chr11 75952124 75952265 -45891591 - B1F2 SINE Alu -6 143 2 1 1164 10235 52 3 0 chr11 75952345 75953592 -45890264 + L1Md_F2 LINE L1 4336 5586 -297 1 1164 8332 45 1 3 chr11 75953593 75954590 -45889266 + L1Md_F2 LINE L1 5588 6582 0 1 1164 1221 41 0 0 chr11 75954736 75954882 -45888974 + B1_Mus2 SINE Alu 2 147 0 1 1164 183 156 0 0 chr11 75955294 75955326 -45888530 + G-rich Low_complexity Low_complexity 3 34 0 1 1164 386 211 0 0 chr11 75955635 75955711 -45888145 + B1F SINE Alu 1 76 -73 1 1164 373 36 0 35 chr11 75955730 75955787 -45888069 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 1 1164 288 77 0 0 chr11 75955876 75955915 -45887941 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1164 658 53 0 31 chr11 75955915 75956012 -45887844 - B1_Mus2 SINE Alu 0 147 54 1 1164 213 195 0 0 chr11 75956140 75956181 -45887675 - BC1_Mm scRNA scRNA -64 88 48 1 1164 651 280 48 39 chr11 75956340 75956548 -45887308 - ID_B1 SINE B4 -1 223 14 1 1164 850 163 108 26 chr11 75956693 75956888 -45886968 + B3 SINE B2 6 216 0 1 1164 289 0 49 0 chr11 75959075 75959116 -45884740 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 1 1164 1166 55 7 0 chr11 75959116 75959262 -45884594 - B1_Mus2 SINE Alu 0 147 1 1 1164 1644 21 11 0 chr11 75959285 75959472 -45884384 + B2_Mm1a SINE B2 2 190 -3 1 1164 311 275 7 9 chr11 75960511 75960598 -45883258 + PB1D10 SINE Alu 30 115 -34 1 1164 876 144 13 20 chr11 75960783 75960932 -45882924 + B1_Mus1 SINE Alu 1 148 0 1 1164 783 109 7 21 chr11 75960933 75961073 -45882783 + (GAGAA)n Simple_repeat Simple_repeat 5 142 0 1 1164 565 274 46 0 chr11 75961096 75961148 -45882708 + B4A SINE B4 32 90 -202 1 1164 269 308 17 17 chr11 75961148 75961267 -45882589 + PB1D7 SINE Alu 1 119 -1 1 1164 657 256 0 0 chr11 75961270 75961395 -45882461 + RSINE1 SINE B4 2 126 -39 1 1164 233 273 121 52 chr11 75961995 75962111 -45881745 - LTR84a LTR ERVL -258 499 376 1 1164 238 366 0 0 chr11 75962943 75963025 -45880831 + ID4_ SINE ID 1 82 -1 1 1164 859 221 31 5 chr11 75963028 75963224 -45880632 + B3 SINE B2 1 201 -15 1 1164 333 192 74 37 chr11 75963225 75963306 -45880550 + RSINE1 SINE B4 82 165 0 1 1164 1340 76 43 5 chr11 75963335 75963521 -45880335 + B2_Mm1a SINE B2 1 193 0 1 1164 359 342 0 17 chr11 75963743 75963862 -45879994 - B4A SINE B4 -169 123 7 1 1164 508 141 9 66 chr11 75964097 75964203 -45879653 + ID_B1 SINE B4 125 224 0 1 1164 403 312 72 6 chr11 75965262 75965597 -45878259 + L1MB5 LINE L1 5725 6111 -69 1 1164 320 291 90 26 chr11 75965749 75965904 -45877952 + RSINE1 SINE B4 1 165 0 1 1164 492 221 19 0 chr11 75965986 75966090 -45877766 - PB1D10 SINE Alu -7 110 5 1 1164 21 0 0 0 chr11 75966132 75966153 -45877703 + AT_rich Low_complexity Low_complexity 1 21 0 1 1164 579 222 123 61 chr11 75966212 75966375 -45877481 + B3A SINE B2 9 181 -17 1 1164 832 249 101 12 chr11 75966522 75966770 -45877086 + B4A SINE B4 8 277 -15 1 1164 272 120 0 20 chr11 75966841 75966892 -45876964 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 1 1164 844 168 0 45 chr11 75966964 75967120 -45876736 + B1_Mur2 SINE Alu 1 149 0 1 1164 810 127 40 40 chr11 75967681 75967829 -45876027 + B1_Mur3 SINE Alu 2 149 0 1 1164 377 198 57 13 chr11 75968129 75968236 -45875620 + B1F SINE Alu 34 140 -9 1 1164 264 241 0 0 chr11 75968699 75968753 -45875103 + PB1 SINE Alu 4 57 -70 1 1164 285 29 0 0 chr11 75968865 75968899 -45874957 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 1 1164 515 218 0 0 chr11 75968907 75969008 -45874848 - PB1D10 SINE Alu -2 115 15 1 1164 405 0 0 0 chr11 75969016 75969061 -45874795 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1164 438 259 37 22 chr11 75969472 75969606 -45874250 + B1F SINE Alu 1 136 -13 1 1164 597 186 51 16 chr11 75969617 75969795 -45874061 + B3A SINE B2 1 194 -1 1 1164 399 21 0 0 chr11 75969807 75969855 -45874001 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1164 190 297 276 31 chr11 75969960 75970214 -45873642 + L3 LINE CR1 3511 3826 -663 1 1164 415 256 156 17 chr11 75970229 75970408 -45873448 + Charlie8 DNA MER1_type 26 229 -2199 1 1164 457 319 64 10 chr11 75971039 75971242 -45872614 + RMER15 LTR ERVL 347 560 -15 1 1164 658 253 43 110 chr11 75972338 75972547 -45871309 - B3A SINE B2 -2 196 2 1 1164 761 207 15 0 chr11 75972558 75972693 -45871163 - B1_Mur1 SINE Alu -8 141 5 1 1164 811 239 168 0 chr11 75972733 75972971 -45870885 + B4A SINE B4 15 292 0 1 1164 260 0 57 0 chr11 75972982 75973017 -45870839 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 1 1164 235 305 61 31 chr11 75973087 75973185 -45870671 + RSINE1 SINE B4 48 148 -17 1 1164 376 269 83 0 chr11 75973241 75973349 -45870507 + PB1D10 SINE Alu 1 117 0 1 1164 224 241 0 108 chr11 75974241 75974306 -45869550 + ID4 SINE ID 3 60 -23 1 1164 203 319 56 0 chr11 75974356 75974428 -45869428 - L2c LINE L2 -48 3339 3264 1 1164 1207 213 65 8 chr11 75974763 75975064 -45868792 + MTEa LTR MaLR 63 379 0 1 1164 1003 144 192 6 chr11 75975423 75975605 -45868251 + B3 SINE B2 1 216 0 1 1164 671 332 38 0 chr11 75975753 75975977 -45867879 + B4A SINE B4 5 237 -55 1 1164 447 19 0 0 chr11 75975977 75976029 -45867827 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1164 1039 188 75 15 chr11 75976051 75976251 -45867605 + B3 SINE B2 5 216 0 1 1164 235 230 247 22 chr11 75976446 75976535 -45867321 + PB1D10 SINE Alu 1 109 -8 1 1164 309 267 0 0 chr11 75976548 75976624 -45867232 + ID4 SINE ID 23 98 -54 1 1164 962 223 19 23 chr11 75978069 75978285 -45865571 - B3 SINE B2 -1 215 1 1 1164 633 197 0 17 chr11 75978453 75978572 -45865284 + B1_Mm SINE Alu 1 117 -30 1 1164 489 34 0 0 chr11 75978572 75978631 -45865225 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1164 22 0 0 0 chr11 75978638 75978660 -45865196 + AT_rich Low_complexity Low_complexity 1 22 0 1 1164 235 222 0 0 chr11 75979035 75979069 -45864787 + T-rich Low_complexity Low_complexity 21 54 0 1 1164 704 260 16 124 chr11 75979069 75979319 -45864537 - ID_B1 SINE B4 0 224 2 1 1164 235 222 0 0 chr11 75979319 75979338 -45864518 + T-rich Low_complexity Low_complexity 2 20 0 1 1164 588 183 134 22 chr11 75979340 75979474 -45864382 - B1_Mur2 SINE Alu 0 149 1 1 1164 703 279 55 8 chr11 75979986 75980243 -45863613 - B4A SINE B4 -23 269 1 1 1164 334 372 46 0 chr11 75980278 75980431 -45863425 + MER58B DNA MER1_type 177 336 -5 1 1164 540 231 8 0 chr11 75980453 75980570 -45863286 + PB1D9 SINE Alu 3 120 0 1 1164 423 252 65 0 chr11 75980873 75980980 -45862876 + PB1D10 SINE Alu 4 117 0 1 1164 240 35 0 0 chr11 75981611 75981640 -45862216 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1164 1120 43 0 21 chr11 75981640 75981782 -45862074 - B1_Mus2 SINE Alu -8 139 1 1 1164 387 0 0 0 chr11 75981812 75981855 -45862001 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1164 403 310 36 72 chr11 75981884 75982051 -45861805 - RSINE1 SINE B4 -1 164 4 1 1164 444 186 0 0 chr11 75982068 75982181 -45861675 + CT-rich Low_complexity Low_complexity 2 114 0 1 1164 261 0 0 0 chr11 75982181 75982210 -45861646 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1164 868 125 20 40 chr11 75982234 75982384 -45861472 + B1_Mur4 SINE Alu 3 149 -1 1 1164 342 0 0 0 chr11 75982906 75982944 -45860912 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1164 379 292 66 33 chr11 75983040 75983192 -45860664 + RSINE1 SINE B4 3 159 -6 1 1164 285 89 0 0 chr11 75983440 75983485 -45860371 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1164 37 0 0 0 chr11 75983656 75983693 -45860163 + AT_rich Low_complexity Low_complexity 1 37 0 1 1164 35 0 0 0 chr11 75984298 75984333 -45859523 + AT_rich Low_complexity Low_complexity 1 35 0 1 1164 225 190 103 0 chr11 75984333 75984391 -45859465 - PB1D10 SINE Alu -3 114 51 1 1164 621 265 74 10 chr11 75984455 75984657 -45859199 - B3 SINE B2 -1 215 1 1 1164 225 330 69 10 chr11 75984674 75984775 -45859081 - ID_B1 SINE B4 -17 207 101 1 1164 319 205 98 49 chr11 75984912 75984994 -45858862 - PB1 SINE Alu -2 125 31 1 1164 273 128 0 0 chr11 75985634 75985681 -45858175 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1164 207 0 0 0 chr11 75985781 75985804 -45858052 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1164 827 161 21 7 chr11 75985826 75985970 -45857886 - B1_Mur2 SINE Alu -2 147 2 1 1164 1106 82 0 20 chr11 75986085 75986234 -45857622 + B1_Mus1 SINE Alu 3 148 0 1 1164 22 0 0 0 chr11 75986279 75986301 -45857555 + AT_rich Low_complexity Low_complexity 1 22 0 1 1164 194 342 105 0 chr11 75987030 75987144 -45856712 + L2a LINE L2 3282 3407 -19 1 1164 250 241 37 0 chr11 75987356 75987410 -45856446 + B4 SINE B4 84 139 -153 1 1164 306 213 0 0 chr11 75987461 75987522 -45856334 + B1F2 SINE Alu 1 61 -88 1 1164 303 269 194 0 chr11 75987522 75987568 -45856288 + ID_B1 SINE B4 82 209 -15 1 1164 270 0 0 0 chr11 75987949 75987979 -45855877 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1164 343 259 164 86 chr11 75988334 75988486 -45855370 + RSINE1 SINE B4 2 165 0 1 1164 645 225 42 7 chr11 75988832 75988975 -45854881 - B1F1 SINE Alu -1 148 1 1 1164 311 235 0 42 chr11 75989334 75989405 -45854451 + ID_B1 SINE B4 132 199 -25 1 1164 216 306 125 0 chr11 75989416 75989488 -45854368 + ID4_ SINE ID 2 82 -1 1 1164 288 238 98 176 chr11 75989799 75989878 -45853978 + B1F1 SINE Alu 2 142 -7 1 1164 321 216 122 0 chr11 75989878 75989952 -45853904 + ID_B1 SINE B4 135 217 -7 1 1164 409 302 90 41 chr11 75989972 75990117 -45853739 + RSINE1 SINE B4 2 153 -12 1 1164 623 263 56 10 chr11 75990258 75990454 -45853402 + B3 SINE B2 1 205 -11 1 1164 1412 44 16 47 chr11 75991044 75991236 -45852620 - B2_Mm2 SINE B2 -8 187 2 1 1164 1616 32 21 0 chr11 75991283 75991472 -45852384 + B2_Mm1a SINE B2 1 193 0 1 1164 433 56 27 27 chr11 75991856 75991929 -45851927 - B1_Mus2 SINE Alu 0 147 75 1 1164 506 223 10 10 chr11 75991961 75992065 -45851791 - RSINE1 SINE B4 -59 106 3 1 1164 1546 195 106 3 chr11 75992091 75992451 -45851405 - MTD LTR MaLR 0 419 23 1 1164 502 237 25 0 chr11 75994183 75994301 -45849555 + RSINE1 SINE B4 10 130 -35 1 1164 294 238 0 16 chr11 75994411 75994475 -45849381 + ID_B1 SINE B4 84 146 -78 1 1164 225 0 0 0 chr11 75994570 75994595 -45849261 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1164 1208 48 0 13 chr11 75994595 75994734 -45849122 - B1_Mus1 SINE Alu -9 139 1 1 1164 410 290 9 9 chr11 75994790 75994898 -45848958 + PB1D10 SINE Alu 3 110 -7 1 1164 559 258 97 38 chr11 75994910 75995095 -45848761 + B3A SINE B2 3 198 0 1 1164 1213 194 0 9 chr11 75995095 75995313 -45848543 + B3 SINE B2 1 216 0 1 1164 332 22 22 0 chr11 75995345 75995390 -45848466 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1164 704 269 152 49 chr11 75995463 75996011 -45847845 - L1MD3 LINE L1 -22 6157 5513 1 1164 279 319 59 0 chr11 75996031 75996166 -45847690 - MIR SINE MIR -1 261 119 1 1164 206 294 37 56 chr11 75996217 75996325 -45847531 - L2b LINE L2 -1 3374 3269 1 1164 1009 24 64 0 chr11 75996948 75997073 -45846783 + B1_Mm SINE Alu 2 134 -13 1 1164 23 0 0 0 chr11 75997073 75997096 -45846760 + GC_rich Low_complexity Low_complexity 1 23 0 1 1164 243 146 0 0 chr11 75997097 75997138 -45846718 + (GGAGAA)n Simple_repeat Simple_repeat 3 43 0 1 1164 453 126 39 69 chr11 75997191 75997293 -45846563 + L1Md_F2 LINE L1 6484 6582 0 1 1164 429 218 36 0 chr11 75997298 75997414 -45846442 + RSINE1 SINE B4 4 124 -41 1 1164 197 65 32 0 chr11 75997554 75997585 -45846271 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1 1164 843 241 31 0 chr11 75997908 75998103 -45845753 + ID_B1 SINE B4 4 204 -20 1 1164 388 248 34 42 chr11 75998158 75998276 -45845580 + PB1D10 SINE Alu 1 117 0 1 1164 799 157 244 23 chr11 75998280 75998456 -45845400 + B3 SINE B2 2 216 0 1 1164 688 248 122 16 chr11 75998782 75999036 -45844820 + B4A SINE B4 2 282 -10 1 1164 281 261 29 0 chr11 75999097 75999166 -45844690 - ID4_ SINE ID -11 72 2 1 1164 1188 78 6 0 chr11 75999199 75999366 -45844490 + B2_Mm2 SINE B2 3 170 -25 1 1164 419 272 14 49 chr11 75999360 75999503 -45844353 - B1F1 SINE Alu -11 138 1 1 1164 300 172 0 17 chr11 75999650 75999709 -45844147 + PB1D9 SINE Alu 11 68 -52 1 1164 458 246 111 7 chr11 75999838 75999973 -45843883 - B1F SINE Alu 0 149 1 1 1164 565 185 67 0 chr11 76000012 76000131 -45843725 + B1_Mur4 SINE Alu 5 131 -19 1 1164 637 124 0 42 chr11 76000131 76000274 -45843582 + GA-rich Low_complexity Low_complexity 3 139 0 2 1164 197 33 33 0 chr11 76000349 76000379 -45843477 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1164 1262 34 0 0 chr11 76000379 76000525 -45843331 - B1_Mm SINE Alu -1 146 1 4 1164 777 205 62 43 chr11 76000526 76000735 -45843121 - B3 SINE B2 0 216 4 5 1164 906 196 0 0 chr11 76000779 76000927 -45842929 - B1_Mur2 SINE Alu 0 149 2 6 1164 434 155 0 14 chr11 76001477 76001549 -45842307 + ID4 SINE ID 4 74 -9 7 1164 330 87 0 0 chr11 76001649 76001695 -45842161 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 8 1164 649 262 0 21 chr11 76001729 76001873 -45841983 - ID_B1 SINE B4 -15 209 69 9 1164 236 274 0 0 chr11 76001943 76001994 -45841862 + ID_B1 SINE B4 55 105 -119 1 1164 500 153 12 24 chr11 76002869 76003036 -45840820 + (TCTG)n Simple_repeat Simple_repeat 2 166 0 1 1164 237 308 165 0 chr11 76003222 76003240 -45840616 - PB1 SINE Alu -20 107 6 1 1164 269 304 14 0 chr11 76003240 76003309 -45840547 - ID_B1 SINE B4 -68 156 87 1 1164 214 331 78 39 chr11 76003480 76003518 -45840338 - B2_Mm2 SINE B2 -9 186 1 1 1164 517 273 78 14 chr11 76003518 76003659 -45840197 - RSINE1 SINE B4 -14 151 2 1 1164 21 0 0 0 chr11 76003761 76003782 -45840074 + AT_rich Low_complexity Low_complexity 1 21 0 1 1164 419 278 31 93 chr11 76003850 76003922 -45839934 - MLT1C LTR MaLR 0 467 401 1 1164 1001 60 98 0 chr11 76003922 76004055 -45839801 + B1_Mus1 SINE Alu 3 148 0 1 1164 441 0 0 0 chr11 76004057 76004106 -45839750 + (TAAAA)n Simple_repeat Simple_repeat 4 52 0 1 1164 419 278 31 93 chr11 76004106 76004224 -45839632 - MLT1C LTR MaLR -67 400 286 1 1164 279 271 157 0 chr11 76004441 76004511 -45839345 + ID4_ SINE ID 1 81 -2 2 1164 551 233 17 0 chr11 76004514 76004630 -45839226 + PB1D7 SINE Alu 2 119 -1 2 1164 780 222 84 70 chr11 76004731 76004840 -45839016 + ID_B1 SINE B4 2 122 -102 2 1164 1654 169 35 90 chr11 76004840 76005217 -45838639 + RLTR15 LTR ERVK 1 356 -3 2 1164 780 222 84 70 chr11 76005217 76005320 -45838536 + ID_B1 SINE B4 123 217 -7 2 1164 367 270 87 0 chr11 76005366 76005481 -45838375 + ID_B1 SINE B4 80 204 -20 2 1164 419 293 90 5 chr11 76005668 76005857 -45837999 - L1M5 LINE L1 -1540 4606 4402 2 1164 188 83 40 40 chr11 76005868 76005918 -45837938 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1164 303 178 87 22 chr11 76006134 76006226 -45837630 + Lx9 LINE L1 7531 7628 -16 2 1164 288 264 56 0 chr11 76006226 76006298 -45837558 - B1F2 SINE Alu -70 79 4 2 1164 313 216 25 42 chr11 76006234 76006314 -45837542 - ID_B1 SINE B4 -139 153 73 2 1164 657 191 135 0 chr11 76006327 76006453 -45837403 - B1_Mur3 SINE Alu -6 143 1 3 1164 1092 126 3 0 chr11 76006925 76007223 -45836633 + (CA)n Simple_repeat Simple_repeat 1 299 0 3 1164 851 263 36 65 chr11 76008470 76008747 -45835109 + B4 SINE B4 2 270 -22 3 1164 342 67 0 0 chr11 76008753 76008798 -45835058 + (CAAG)n Simple_repeat Simple_repeat 2 46 0 3 1164 759 113 26 0 chr11 76008853 76008968 -45834888 + B1_Mur1 SINE Alu 32 149 0 3 1164 760 120 0 113 chr11 76009249 76009390 -45834466 + B1_Mur1 SINE Alu 24 148 -1 3 1164 186 271 69 28 chr11 76010640 76010712 -45833144 - MIR SINE MIR -90 118 44 3 1164 825 236 75 21 chr11 76011071 76011257 -45832599 - B3A SINE B2 -2 196 1 3 1164 180 0 0 0 chr11 76011370 76011390 -45832466 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1164 455 296 85 36 chr11 76011746 76011911 -45831945 - B4 SINE B4 -119 173 1 3 1164 726 245 7 21 chr11 76012004 76012146 -45831710 - B1F1 SINE Alu -1 148 9 4 1164 329 270 18 107 chr11 76012048 76012160 -45831696 - MT2B LTR ERVL -342 259 158 4 1164 557 255 61 24 chr11 76012381 76012546 -45831310 + B4A SINE B4 2 172 -120 4 1164 354 23 0 0 chr11 76012648 76012691 -45831165 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1164 1153 55 7 7 chr11 76012700 76012847 -45831009 - B1_Mus1 SINE Alu 0 148 2 4 1164 225 351 144 36 chr11 76013009 76013204 -45830652 + MIRb SINE MIR 41 256 -12 4 1164 231 258 39 97 chr11 76013242 76013259 -45830597 + RLTR25B LTR ERVK 417 508 -515 4 1164 240 257 0 86 chr11 76013259 76013340 -45830516 + MT2B LTR ERVL 191 264 -337 4 1164 448 228 11 11 chr11 76013272 76013365 -45830491 + B1_Mur1 SINE Alu 46 138 -11 4 1164 1519 52 11 0 chr11 76013398 76013589 -45830267 + B2_Mm1a SINE B2 1 193 0 4 1164 318 300 0 0 chr11 76013666 76013746 -45830110 + ID2 SINE ID 2 81 -2 5 1164 855 111 16 0 chr11 76013796 76013922 -45829934 - B1_Mur3 SINE Alu -4 145 18 5 1164 314 302 21 10 chr11 76014737 76014834 -45829022 - MIR3 SINE MIR -2 206 109 5 1164 35 71 0 0 chr11 76015487 76015557 -45828299 + GC_rich Low_complexity Low_complexity 1 70 0 5 1164 219 196 19 38 chr11 76016762 76016815 -45827041 - B1F2 SINE Alu -91 58 7 5 1164 990 87 0 0 chr11 76017043 76017181 -45826675 + (TC)n Simple_repeat Simple_repeat 1 138 0 5 1164 599 211 18 0 chr11 76017191 76017300 -45826556 - PB1D9 SINE Alu -6 114 4 5 1164 280 315 80 62 chr11 76018019 76018046 -45825810 - B2_Mm2 SINE B2 -9 186 8 5 1164 608 269 27 27 chr11 76018046 76018195 -45825661 - RSINE1 SINE B4 -6 159 11 5 1164 181 346 11 69 chr11 76018608 76018695 -45825161 - L2 LINE L2 -611 2808 2727 5 1164 1096 162 23 19 chr11 76019179 76019393 -45824463 - B3 SINE B2 0 216 2 6 1164 228 275 25 12 chr11 76019403 76019484 -45824372 - ID4_ SINE ID 0 83 2 6 1164 322 239 44 15 chr11 76019506 76019574 -45824282 - PB1D10 SINE Alu -38 79 10 6 1164 795 186 0 33 chr11 76019604 76019754 -45824102 - B1_Mus1 SINE Alu -3 145 1 6 1164 715 212 144 83 chr11 76019759 76019939 -45823917 - B3A SINE B2 -3 192 2 6 1164 558 283 64 26 chr11 76020061 76020217 -45823639 - RSINE1 SINE B4 -2 163 2 6 1164 414 0 0 0 chr11 76020863 76020909 -45822947 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1164 300 209 44 15 chr11 76021123 76021191 -45822665 + B4A SINE B4 167 236 -56 6 1164 267 104 0 0 chr11 76021232 76021280 -45822576 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 6 1165 306 0 0 0 chr11 76023167 76023201 -45820655 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 6 1165 446 209 43 32 chr11 76023651 76023745 -45820111 - PB1D10 SINE Alu -22 95 1 7 1165 218 289 202 12 chr11 76023903 76023987 -45819869 - PB1D7 SINE Alu -46 103 4 7 1165 594 254 81 17 chr11 76027723 76027895 -45815961 - B3A SINE B2 -15 183 1 7 1165 504 303 106 0 chr11 76028163 76028305 -45815551 + RSINE1 SINE B4 2 158 -7 7 1165 573 195 61 9 chr11 76028429 76028543 -45815313 - PB1D9 SINE Alu 0 120 1 7 1165 349 226 0 0 chr11 76028553 76028615 -45815241 - ID4_ SINE ID -20 63 2 7 1165 424 279 123 0 chr11 76029357 76029479 -45814377 + B1_Mur1 SINE Alu 4 140 -9 7 1165 198 0 0 0 chr11 76029819 76029841 -45814015 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1165 242 288 114 84 chr11 76029865 76029912 -45813944 - MIR SINE MIR -19 243 195 7 1165 570 204 90 15 chr11 76029912 76030046 -45813810 - B1F2 SINE Alu -5 144 1 7 1165 242 288 114 84 chr11 76030046 76030165 -45813691 - MIR SINE MIR -68 194 72 7 1165 381 269 126 0 chr11 76032970 76032991 -45810865 - B4 SINE B4 -66 226 93 8 1165 443 224 71 0 chr11 76032991 76033089 -45810767 - B1_Mus2 SINE Alu -35 112 8 8 1165 483 268 51 25 chr11 76033139 76033296 -45810560 - RSINE1 SINE B4 -2 163 3 8 1165 1515 208 55 53 chr11 76033361 76033895 -45809961 + RLTR20A LTR ERVK 1 532 -2 8 1165 385 181 68 14 chr11 76033902 76033975 -45809881 - RMER10B LTR ERVL -57 341 265 8 1165 1692 182 63 58 chr11 76034088 76034145 -45809711 - ORR1B1 LTR MaLR 0 394 340 8 1165 1517 57 0 49 chr11 76034145 76034348 -45809508 - B2_Mm1t SINE B2 0 193 1 8 1165 1692 182 63 58 chr11 76034348 76034669 -45809187 - ORR1B1 LTR MaLR -55 339 14 8 1165 277 230 122 0 chr11 76034648 76034713 -45809143 + PB1D10 SINE Alu 6 79 -38 8 1165 340 290 97 0 chr11 76034713 76034806 -45809050 + B1_Mur3 SINE Alu 3 104 -45 8 1165 276 308 25 13 chr11 76034812 76034891 -45808965 + B1F1 SINE Alu 68 147 -2 8 1165 197 33 33 0 chr11 76034993 76035023 -45808833 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1165 578 165 58 0 chr11 76035023 76035126 -45808730 - PB1D9 SINE Alu -11 109 1 9 1165 341 335 88 68 chr11 76035788 76035993 -45807863 + ID_B1 SINE B4 9 217 -7 9 1165 711 188 23 0 chr11 76035867 76036000 -45807856 + B1_Mur3 SINE Alu 14 149 0 9 1165 1156 88 0 0 chr11 76036002 76036150 -45807706 + B1_Mus1 SINE Alu 1 148 0 9 1165 285 0 21 43 chr11 76036151 76036198 -45807658 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 9 1165 388 320 130 11 chr11 76036294 76036471 -45807385 + B3A SINE B2 1 198 0 9 1165 326 252 73 73 chr11 76036614 76036738 -45807118 + MT2B LTR ERVL 134 257 -344 9 1165 649 151 70 16 chr11 76036651 76036779 -45807077 + B1_Mur4 SINE Alu 16 150 0 9 1165 21 0 0 0 chr11 76036797 76036818 -45807038 + AT_rich Low_complexity Low_complexity 1 21 0 9 1165 226 306 59 0 chr11 76037035 76037120 -45806736 + B1F2 SINE Alu 1 90 -59 1 1165 1263 35 0 0 chr11 76037693 76037838 -45806018 + B1_Mus2 SINE Alu 1 145 -2 1 1165 252 0 0 0 chr11 76037838 76037866 -45805990 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1 1165 370 215 49 25 chr11 76037930 76038011 -45805845 + RSINE1 SINE B4 69 151 -14 1 1165 180 0 0 0 chr11 76038035 76038055 -45805801 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1165 1205 48 0 0 chr11 76038055 76038201 -45805655 - B1_Mus2 SINE Alu 0 147 2 1 1165 741 195 16 0 chr11 76038346 76038469 -45805387 - B1F2 SINE Alu -1 148 24 1 1165 409 218 70 70 chr11 76038598 76038661 -45805195 + RMER4B LTR ERVK 1 63 -522 1 1165 1357 201 30 68 chr11 76038661 76039209 -45804647 + RMER10B LTR ERVL 1 437 -5 1 1165 452 190 472 0 chr11 76039209 76039351 -45804505 - B3 SINE B2 -6 210 2 1 1165 743 191 27 130 chr11 76039351 76039387 -45804469 + RMER10B LTR ERVL 362 395 -3 1 1165 2702 147 91 18 chr11 76039387 76039882 -45803974 + RMER4B LTR ERVK 54 585 0 1 1165 6430 89 31 5 chr11 76039990 76041279 -45802577 + L1VL4 LINE L1 394 1732 -4115 1 1165 270 263 0 50 chr11 76041292 76041305 -45802551 + B4A SINE B4 77 86 -206 1 1165 637 162 55 166 chr11 76041305 76041414 -45802442 + B1_Mur2 SINE Alu 2 91 -58 1 1165 2182 146 10 90 chr11 76041414 76041760 -45802096 + RLTR14 LTR ERV1 3 330 -52 1 1165 1347 55 77 0 chr11 76041760 76041941 -45801915 - B2_Mm2 SINE B2 0 195 1 1 1165 2182 146 10 90 chr11 76041941 76042007 -45801849 + RLTR14 LTR ERV1 331 382 0 1 1165 637 162 55 166 chr11 76042007 76042060 -45801796 + B1_Mur2 SINE Alu 92 146 -3 1 1165 858 239 66 63 chr11 76042072 76042358 -45801498 + B4A SINE B4 6 292 0 1 1165 615 281 30 0 chr11 76042403 76042538 -45801318 + ID_B1 SINE B4 82 220 -4 1 1165 613 172 34 17 chr11 76042557 76042675 -45801181 + B1_Mur1 SINE Alu 30 149 0 1 1165 548 307 76 94 chr11 76042689 76042903 -45800953 + B4 SINE B4 1 214 -78 1 1165 1552 48 21 0 chr11 76042903 76043091 -45800765 + B2_Mm1a SINE B2 2 193 0 1 1165 548 307 76 94 chr11 76043091 76043164 -45800692 + B4 SINE B4 215 283 -9 1 1165 320 261 119 35 chr11 76043520 76043746 -45800110 + L1ME2 LINE L1 5290 5534 -630 1 1165 202 195 0 0 chr11 76043749 76043790 -45800066 + C-rich Low_complexity Low_complexity 1 41 0 1 1165 357 200 238 16 chr11 76043917 76044039 -45799817 - Tigger7 DNA MER2_type -1900 591 443 1 1165 549 236 40 8 chr11 76044165 76044289 -45799567 - RSINE1 SINE B4 -33 132 5 1 1165 863 277 155 30 chr11 76044285 76044620 -45799236 - Tigger7 DNA MER2_type -2113 378 2 1 1165 480 318 152 3 chr11 76044667 76045008 -45798848 + L1ME2 LINE L1 5625 6016 -148 1 1165 360 276 45 11 chr11 76045396 76045484 -45798372 + PB1 SINE Alu 29 119 -8 1 1165 237 247 179 13 chr11 76045758 76045836 -45798020 + PB1 SINE Alu 35 125 -2 1 1165 636 306 11 21 chr11 76045885 76046075 -45797781 - B3 SINE B2 -26 190 3 1 1165 672 162 18 0 chr11 76046081 76046192 -45797664 - B1_Mur1 SINE Alu 0 149 37 1 1165 564 275 0 0 chr11 76047034 76047154 -45796702 + B3A SINE B2 1 120 -78 1 1165 261 0 0 0 chr11 76047193 76047222 -45796634 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1165 451 266 84 23 chr11 76047234 76047365 -45796491 + B3A SINE B2 56 194 -4 1 1165 429 291 82 0 chr11 76047574 76047708 -45796148 + B4A SINE B4 22 166 -126 1 1165 847 101 147 0 chr11 76048352 76048481 -45795375 + B1_Mus1 SINE Alu 1 148 0 1 1165 934 107 7 7 chr11 76049065 76049216 -45794640 + (GAAA)n Simple_repeat Simple_repeat 4 154 0 1 1165 747 118 9 0 chr11 76049236 76049346 -45794510 + B1_Mus1 SINE Alu 38 148 0 1 1165 217 333 0 62 chr11 76049440 76049504 -45794352 - ID4_ SINE ID -8 75 16 1 1165 394 299 16 49 chr11 76049628 76049751 -45794105 - PB1 SINE Alu -7 120 2 1 1165 229 323 98 90 chr11 76050208 76050295 -45793561 + B4 SINE B4 10 201 -91 1 1165 260 288 158 16 chr11 76050295 76050398 -45793458 + B1F1 SINE Alu 5 126 -23 1 1165 255 31 0 0 chr11 76050398 76050430 -45793426 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1165 530 159 17 50 chr11 76050430 76050544 -45793312 - PB1D9 SINE Alu -1 119 9 1 1165 260 288 158 16 chr11 76050544 76050571 -45793285 + B1F1 SINE Alu 127 148 -1 1 1165 229 323 98 90 chr11 76050571 76050602 -45793254 + B4 SINE B4 202 255 -37 1 1165 482 271 121 13 chr11 76050765 76050922 -45792934 + MLT1L LTR MaLR 429 602 -8 1 1165 1472 55 16 6 chr11 76051503 76051686 -45792170 + B2_Mm2 SINE B2 2 186 -9 1 1165 315 246 16 0 chr11 76051831 76051892 -45791964 - ID4 SINE ID -20 63 2 1 1165 253 237 68 0 chr11 76051851 76051910 -45791946 - ZP3AR Satellite Satellite -127 85 23 1 1165 1221 101 62 0 chr11 76052115 76052294 -45791562 - B2_Mm2 SINE B2 -5 190 1 1 1165 512 231 0 27 chr11 76052339 76052450 -45791406 - PB1D10 SINE Alu -9 108 1 1 1165 184 343 48 0 chr11 76052531 76052636 -45791220 + L2c LINE L2 3033 3142 -245 1 1165 764 225 131 6 chr11 76052678 76052861 -45790995 + B3 SINE B2 2 207 -9 1 1165 247 343 92 101 chr11 76053612 76053839 -45790017 + MER21B LTR ERV1 9 233 -630 1 1165 349 290 186 65 chr11 76053858 76054057 -45789799 + MER21B LTR ERV1 293 515 -348 1 1165 305 234 65 0 chr11 76054547 76054624 -45789232 - PB1D7 SINE Alu -20 100 19 1 1165 810 206 0 0 chr11 76054751 76054882 -45788974 + B1_Mur2 SINE Alu 5 135 -14 1 1165 266 217 359 0 chr11 76055141 76055247 -45788609 - B1F SINE Alu -5 144 1 1 1165 363 204 21 83 chr11 76055308 76055404 -45788452 + PB1D10 SINE Alu 28 117 0 1 1165 234 0 0 0 chr11 76056038 76056064 -45787792 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1165 484 275 50 8 chr11 76056085 76056206 -45787650 - B3A SINE B2 -72 126 1 1 1165 21 0 0 0 chr11 76056323 76056344 -45787512 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 229 245 0 0 chr11 76056588 76056637 -45787219 + ID SINE ID 23 71 -153 1 1165 270 326 53 0 chr11 76058272 76058367 -45785489 - ID_B1 SINE B4 -26 198 99 1 1165 754 153 29 14 chr11 76058437 76058576 -45785280 + B1_Mus1 SINE Alu 8 148 0 1 1165 255 311 56 0 chr11 76058594 76058684 -45785172 - RSINE1 SINE B4 -34 131 37 1 1165 189 0 0 0 chr11 76059580 76059601 -45784255 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1165 631 232 7 27 chr11 76059650 76059796 -45784060 + B1_Mur4 SINE Alu 2 144 -6 1 1165 884 202 72 5 chr11 76059992 76060186 -45783670 - B3 SINE B2 -9 207 1 1 1165 1185 69 97 0 chr11 76060194 76060369 -45783487 - B2_Mm2 SINE B2 -1 194 3 1 1165 240 295 36 62 chr11 76060381 76060493 -45783363 - BC1_Mm scRNA scRNA -39 113 5 1 1165 30 59 0 0 chr11 76061029 76061080 -45782776 + AT_rich Low_complexity Low_complexity 1 51 0 1 1165 397 301 35 126 chr11 76061134 76061293 -45782563 - B3A SINE B2 -16 182 38 1 1165 1357 79 11 0 chr11 76061293 76061482 -45782374 - B2_Mm1t SINE B2 -2 191 1 1 1165 397 301 35 126 chr11 76061482 76061520 -45782336 - B3A SINE B2 -161 37 3 1 1165 190 304 20 89 chr11 76061653 76061754 -45782102 + MIRb SINE MIR 127 220 -48 1 1165 878 205 59 10 chr11 76064110 76064312 -45779544 - B3 SINE B2 -4 212 1 1 1165 538 203 112 8 chr11 76064635 76064769 -45779087 - B1_Mur1 SINE Alu -1 148 1 1 1165 589 214 39 16 chr11 76064922 76065050 -45778806 + RSINE1 SINE B4 2 132 -33 1 1165 282 286 158 56 chr11 76065063 76065259 -45778597 + B3 SINE B2 1 216 0 1 1165 372 169 126 46 chr11 76065999 76066086 -45777770 - PB1D9 SINE Alu -12 108 15 1 1165 720 38 109 36 chr11 76066525 76066635 -45777221 + B2_Mm2 SINE B2 2 119 -76 1 1165 417 250 37 49 chr11 76068038 76068202 -45775654 + MTD LTR MaLR 6 167 -252 1 1165 358 200 114 0 chr11 76068223 76068328 -45775528 + MTD LTR MaLR 262 378 -1 1 1165 1051 110 61 0 chr11 76068495 76068659 -45775197 + B2_Mm2 SINE B2 2 175 -20 1 1165 400 174 54 0 chr11 76069428 76069520 -45774336 - PB1D10 SINE Alu 0 117 21 1 1165 392 221 163 8 chr11 76069567 76069690 -45774166 + B1F SINE Alu 2 143 -6 1 1165 192 179 0 25 chr11 76071445 76071485 -45772371 + MIRb SINE MIR 230 268 0 1 1165 1093 82 0 0 chr11 76077688 76077835 -45766021 + B1_Mus1 SINE Alu 2 148 0 1 1165 689 129 9 0 chr11 76080902 76081018 -45762838 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 1 1165 550 240 53 15 chr11 76082395 76082526 -45761330 + B1F2 SINE Alu 6 141 -8 1 1165 372 311 42 49 chr11 76082534 76082676 -45761180 + B1F SINE Alu 7 147 -2 1 1165 333 0 0 0 chr11 76082687 76082724 -45761132 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1165 698 229 110 16 chr11 76082725 76082907 -45760949 + B3 SINE B2 18 216 0 1 1165 616 281 14 86 chr11 76083127 76083349 -45760507 + MTEa LTR MaLR 13 218 -161 1 1165 705 70 0 0 chr11 76084042 76084142 -45759714 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 1165 310 366 37 50 chr11 76084155 76084268 -45759588 - L1M5 LINE L1 -2907 3239 3128 1 1165 1562 47 0 0 chr11 76084268 76084460 -45759396 - B2_Mm1a SINE B2 0 193 2 1 1165 310 366 37 50 chr11 76084460 76084507 -45759349 - L1M5 LINE L1 -3019 3127 3081 1 1165 1132 47 0 39 chr11 76084509 76084663 -45759193 - B1_Mus1 SINE Alu 0 148 1 1 1165 1107 80 0 0 chr11 76084972 76085122 -45758734 + B1_Mur4 SINE Alu 1 150 0 1 1165 22 35 0 0 chr11 76085122 76085151 -45758705 + AT_rich Low_complexity Low_complexity 1 29 0 1 1165 366 219 0 0 chr11 76085151 76085256 -45758600 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 1165 706 274 11 0 chr11 76085257 76085436 -45758420 - B3A SINE B2 -17 181 1 1 1165 21 0 0 0 chr11 76085444 76085465 -45758391 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 646 164 116 8 chr11 76085478 76085607 -45758249 - B1_Mur4 SINE Alu -6 144 2 1 1165 266 248 65 5 chr11 76085673 76085770 -45758086 - PB1D9 SINE Alu -20 128 32 2 1165 500 244 16 72 chr11 76086280 76086474 -45757382 - B3A SINE B2 -15 183 1 2 1165 323 301 27 25 chr11 76086617 76086840 -45757016 + L1ME1 LINE L1 5953 6177 -2 2 1165 211 398 21 0 chr11 76088344 76088437 -45755419 + RSINE1 SINE B4 58 152 -13 2 1165 1065 89 0 0 chr11 76088439 76088607 -45755249 + (CA)n Simple_repeat Simple_repeat 2 169 0 2 1165 1130 48 0 7 chr11 76088634 76088781 -45755075 - B1_Mm SINE Alu -1 146 1 2 1165 22 0 0 0 chr11 76088791 76088813 -45755043 + AT_rich Low_complexity Low_complexity 1 22 0 2 1165 774 169 56 14 chr11 76088813 76088957 -45754899 + B1_Mur4 SINE Alu 1 150 0 2 1165 241 172 52 0 chr11 76088957 76089015 -45754841 + A-rich Low_complexity Low_complexity 5 65 0 2 1165 306 292 36 36 chr11 76089202 76089312 -45754544 - MER5B DNA MER1_type -6 172 63 2 1165 587 201 8 50 chr11 76089697 76089834 -45754022 - B1_Mur1 SINE Alu -3 145 15 2 1165 994 75 0 0 chr11 76089828 76089961 -45753895 + B1_Mm SINE Alu 15 147 0 2 1165 399 157 0 0 chr11 76089961 76090031 -45753825 + A-rich Low_complexity Low_complexity 1 70 0 2 1165 356 239 206 0 chr11 76090063 76090155 -45753701 - PB1D10 SINE Alu -6 111 1 2 1165 360 0 0 0 chr11 76090160 76090200 -45753656 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1165 662 150 167 0 chr11 76090490 76090610 -45753246 - B1_Mur4 SINE Alu -9 141 2 2 1165 404 246 42 34 chr11 76090654 76090772 -45753084 + B1F SINE Alu 30 148 -1 2 1165 1050 82 0 20 chr11 76090826 76090976 -45752880 + B1_Mus1 SINE Alu 2 148 0 2 1165 547 257 0 0 chr11 76091289 76091394 -45752462 - RSINE1 SINE B4 -31 134 30 2 1165 708 224 0 20 chr11 76091429 76091579 -45752277 - B1_Mur1 SINE Alu 0 149 3 2 1165 297 51 0 0 chr11 76091604 76091643 -45752213 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1165 324 316 41 0 chr11 76093325 76093423 -45750433 - B1F SINE Alu -2 147 46 2 1165 758 176 0 7 chr11 76093461 76093598 -45750258 - B1_Mus1 SINE Alu -11 137 2 2 1165 516 336 46 36 chr11 76093657 76093938 -45749918 + B4A SINE B4 5 288 -4 2 1165 441 0 0 0 chr11 76093939 76093988 -45749868 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1165 205 138 0 0 chr11 76094014 76094043 -45749813 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 2 1165 1385 78 16 0 chr11 76094147 76094338 -45749518 + B2_Mm2 SINE B2 2 195 0 2 1165 1125 89 60 0 chr11 76094706 76094874 -45748982 + B2_Mm1t SINE B2 2 179 -14 2 1165 213 236 0 52 chr11 76094921 76094979 -45748877 + B2_Mm1a SINE B2 48 102 -91 2 1165 357 186 0 0 chr11 76094990 76095060 -45748796 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1165 652 185 58 15 chr11 76095082 76095219 -45748637 + B1_Mur4 SINE Alu 7 149 -1 2 1165 1583 26 0 20 chr11 76095371 76095568 -45748288 + B2_Mm1a SINE B2 1 193 0 2 1165 214 217 22 0 chr11 76095664 76095710 -45748146 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1165 222 118 0 0 chr11 76095936 76095970 -45747886 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 2 1165 703 260 25 54 chr11 76096005 76096153 -45747703 - B3A SINE B2 0 198 57 2 1165 2524 39 0 0 chr11 76096153 76096461 -45747395 - L1_Mus1 LINE L1 0 6567 6260 2 1165 703 260 25 54 chr11 76096461 76096515 -45747341 - B3A SINE B2 -142 56 2 2 1165 1101 180 9 14 chr11 76096963 76097177 -45746679 - B3 SINE B2 0 216 4 2 1165 694 210 41 18 chr11 76097197 76097391 -45746465 - B3A SINE B2 -27 189 1 2 1165 623 167 79 8 chr11 76098006 76098133 -45745723 + B1_Mur4 SINE Alu 7 142 -8 2 1165 262 292 0 27 chr11 76098193 76098267 -45745589 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 2 1165 459 152 0 0 chr11 76098783 76098862 -45744994 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1165 243 146 0 0 chr11 76098893 76098934 -45744922 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 2 1165 210 221 111 56 chr11 76099290 76099362 -45744494 - ID SINE ID -141 83 8 2 1165 240 195 282 23 chr11 76099620 76099751 -45744105 + B4A SINE B4 2 166 -126 2 1165 180 0 0 0 chr11 76099756 76099776 -45744080 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1165 217 180 80 0 chr11 76099815 76099885 -45743971 + (CATG)n Simple_repeat Simple_repeat 1 75 0 2 1165 342 261 212 17 chr11 76100710 76100889 -45742967 + MIR SINE MIR 26 239 -23 2 1165 273 254 70 0 chr11 76101404 76101475 -45742381 - ID_B1 SINE B4 -16 208 133 2 1165 270 298 39 5 chr11 76101415 76101492 -45742364 - B1F2 SINE Alu -35 114 41 2 1165 304 309 27 54 chr11 76101791 76101938 -45741918 + MIRb SINE MIR 52 194 -74 2 1165 224 171 0 0 chr11 76101956 76101997 -45741859 + ID4 SINE ID 43 83 0 2 1165 301 253 82 0 chr11 76103238 76103356 -45740500 - PB1D10 SINE Alu -13 136 2 2 1165 731 214 7 7 chr11 76103651 76103797 -45740059 + B1_Mur1 SINE Alu 3 148 -1 2 1165 916 99 0 0 chr11 76104590 76104721 -45739135 + B1_Mus2 SINE Alu 11 141 -6 2 1165 1179 94 6 0 chr11 76104925 76105095 -45738761 + B2_Mm1t SINE B2 1 171 -22 2 1165 287 119 324 27 chr11 76105151 76105262 -45738594 + B2_Mm2 SINE B2 48 191 -4 2 1165 669 199 189 22 chr11 76105309 76105494 -45738362 - B3 SINE B2 0 216 1 2 1165 216 0 0 0 chr11 76107092 76107116 -45736740 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 2 1165 182 268 11 118 chr11 76107644 76107737 -45736119 - L2c LINE L2 -10 3377 3295 2 1165 557 242 149 0 chr11 76107957 76108118 -45735738 + B3 SINE B2 32 216 0 2 1165 193 29 29 29 chr11 76108125 76108160 -45735696 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1165 1011 267 50 25 chr11 76108837 76109160 -45734696 - Tigger7 DNA MER2_type -1880 611 281 2 1165 322 310 75 37 chr11 76109231 76109365 -45734491 - Tigger7 DNA MER2_type -2330 161 23 2 1165 587 224 0 29 chr11 76109804 76109942 -45733914 + B1F1 SINE Alu 16 149 0 2 1165 207 100 0 0 chr11 76111226 76111256 -45732600 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2 1165 999 130 0 0 chr11 76111264 76111410 -45732446 + B1_Mus1 SINE Alu 2 147 -1 2 1165 204 258 0 16 chr11 76111411 76111474 -45732382 + A-rich Low_complexity Low_complexity 1 62 0 2 1165 896 268 0 5 chr11 76111480 76111690 -45732166 + B3 SINE B2 2 210 -6 2 1165 272 294 112 59 chr11 76112878 76113030 -45730826 - MER5A DNA MER1_type -19 170 11 2 1165 182 360 75 29 chr11 76113059 76113299 -45730557 + L2c LINE L2 3083 3333 -54 2 1165 817 160 69 0 chr11 76113495 76113626 -45730230 - B1_Mur2 SINE Alu -7 142 3 2 1165 625 212 182 11 chr11 76113690 76113871 -45729985 - B3 SINE B2 -4 212 1 2 1165 252 0 0 0 chr11 76114396 76114424 -45729432 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 2 1165 379 260 15 89 chr11 76115103 76115238 -45728618 - MT2B LTR ERVL -301 300 176 2 1165 760 164 8 0 chr11 76115127 76115249 -45728607 - B1_Mur1 SINE Alu -26 123 1 2 1165 595 219 136 30 chr11 76116076 76116245 -45727611 - B3A SINE B2 -10 188 2 2 1165 316 315 96 21 chr11 76116716 76116956 -45726900 + L1MC4 LINE L1 6815 7072 -970 2 1165 241 217 0 0 chr11 76116958 76117004 -45726852 + G-rich Low_complexity Low_complexity 1 46 0 2 1165 1215 43 0 0 chr11 76117222 76117360 -45726496 + B1_Mus2 SINE Alu 1 138 -9 2 1165 358 197 12 73 chr11 76117397 76117479 -45726377 - B1F2 SINE Alu -45 104 28 2 1165 234 0 0 0 chr11 76117519 76117545 -45726311 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1165 374 247 44 22 chr11 76117563 76117654 -45726202 - PB1D10 SINE Alu -15 102 10 2 1165 267 104 0 0 chr11 76117682 76117730 -45726126 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1165 284 206 116 14 chr11 76118116 76118185 -45725671 + RSINE1 SINE B4 3 78 -87 2 1165 534 168 64 18 chr11 76118303 76118412 -45725444 + PB1D9 SINE Alu 2 115 -5 2 1165 22 35 0 0 chr11 76118430 76118459 -45725397 + AT_rich Low_complexity Low_complexity 1 29 0 2 1165 475 258 49 68 chr11 76118470 76118632 -45725224 - RSINE1 SINE B4 -4 161 3 2 1165 200 351 39 0 chr11 76119317 76119394 -45724462 - MIR3 SINE MIR -43 165 86 2 1165 334 302 108 0 chr11 76119569 76119698 -45724158 + L1M5 LINE L1 5581 5723 -450 2 1165 34 70 0 11 chr11 76119830 76119876 -45723980 + AT_rich Low_complexity Low_complexity 1 46 0 2 1165 978 236 39 0 chr11 76119876 76120084 -45723772 - B3 SINE B2 0 216 1 2 1165 34 70 0 11 chr11 76120084 76120124 -45723732 + AT_rich Low_complexity Low_complexity 1 40 0 2 1165 558 234 18 9 chr11 76120125 76120237 -45723619 - B3A SINE B2 -79 119 7 2 1165 414 0 0 0 chr11 76120300 76120346 -45723510 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1165 331 307 128 10 chr11 76121111 76121213 -45722643 + B4A SINE B4 41 154 -138 2 1165 2389 261 72 53 chr11 76121248 76122021 -45721835 + Lx8 LINE L1 6531 7327 -146 2 1165 696 229 28 0 chr11 76122021 76122165 -45721691 + B1_Mur3 SINE Alu 2 149 0 2 1165 2389 261 72 53 chr11 76122165 76122314 -45721542 + Lx8 LINE L1 7328 7470 -3 2 1165 192 77 0 0 chr11 76122320 76122346 -45721510 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1165 354 276 19 16 chr11 76122346 76122453 -45721403 - B1_Mur1 SINE Alu -10 139 10 2 1165 254 289 0 0 chr11 76122480 76122532 -45721324 + B4A SINE B4 223 274 -18 2 1165 192 40 0 0 chr11 76122538 76122563 -45721293 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1165 296 256 36 12 chr11 76122596 76122679 -45721177 + PB1D10 SINE Alu 13 97 -20 2 1165 358 230 39 20 chr11 76123202 76123304 -45720552 + MER20 DNA MER1_type 16 119 -100 3 1165 369 0 0 0 chr11 76124165 76124206 -45719650 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1165 723 279 50 6 chr11 76124358 76124538 -45719318 + MER20 DNA MER1_type 28 215 -4 3 1165 496 252 40 59 chr11 76125526 76125678 -45718178 - MER21B LTR ERV1 -219 644 496 3 1165 199 371 62 0 chr11 76126213 76126310 -45717546 - L2c LINE L2 -9 3366 3264 3 1165 249 350 66 41 chr11 76126469 76126713 -45717143 - L2c LINE L2 -207 3180 2931 3 1165 801 251 0 30 chr11 76126846 76127014 -45716842 + RSINE1 SINE B4 3 165 0 3 1165 21 0 0 0 chr11 76127015 76127036 -45716820 + AT_rich Low_complexity Low_complexity 1 21 0 3 1165 851 212 14 0 chr11 76127052 76127198 -45716658 - B1_Mur3 SINE Alu 0 149 2 3 1165 414 245 57 0 chr11 76127262 76127368 -45716488 + PB1D9 SINE Alu 3 114 -6 3 1165 1148 178 20 5 chr11 76127903 76128106 -45715750 + B3 SINE B2 1 206 -10 3 1165 185 196 22 0 chr11 76128157 76128203 -45715653 + GA-rich Low_complexity Low_complexity 3 49 0 3 1165 415 298 0 0 chr11 76129524 76129638 -45714218 + PB1D10 SINE Alu 4 117 0 3 1165 275 122 0 20 chr11 76129638 76129688 -45714168 + (GAA)n Simple_repeat Simple_repeat 2 50 0 3 1165 328 352 48 0 chr11 76130018 76130143 -45713713 + L1ME2 LINE L1 6003 6133 -31 3 1165 1196 62 0 0 chr11 76130143 76130287 -45713569 + B1_Mm SINE Alu 2 145 -2 3 1165 350 21 21 0 chr11 76130287 76130334 -45713522 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1165 810 208 0 0 chr11 76130367 76130514 -45713342 + B1_Mur1 SINE Alu 2 141 -8 3 1165 755 167 0 62 chr11 76130515 76130675 -45713181 + RMER10B LTR ERVL 201 350 -48 3 1165 300 53 0 0 chr11 76130675 76130713 -45713143 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1165 221 296 84 49 chr11 76130811 76130953 -45712903 + L2 LINE L2 2474 2620 -799 3 1165 188 260 0 94 chr11 76131322 76131407 -45712449 - MIRb SINE MIR -5 263 187 3 1165 245 276 81 0 chr11 76131480 76131567 -45712289 + MIRm SINE MIR 183 276 0 3 1165 294 269 51 119 chr11 76131764 76131931 -45711925 - MIRb SINE MIR -5 257 98 3 1165 490 176 11 42 chr11 76132294 76132389 -45711467 + B1_Mur1 SINE Alu 57 148 -1 3 1165 230 246 17 50 chr11 76132477 76132537 -45711319 - B3A SINE B2 -140 58 1 3 1165 245 255 0 18 chr11 76134295 76134351 -45709505 + CT-rich Low_complexity Low_complexity 6 60 0 3 1165 901 222 87 0 chr11 76134372 76134557 -45709299 - B3 SINE B2 -14 202 2 3 1165 213 338 12 119 chr11 76135058 76135142 -45708714 - ID SINE ID -147 77 3 3 1165 208 220 16 33 chr11 76135964 76136025 -45707831 + GA-rich Low_complexity Low_complexity 1 60 0 3 1165 518 173 8 111 chr11 76136331 76136448 -45707408 + B1_Mur4 SINE Alu 5 109 -41 3 1165 450 0 0 0 chr11 76136451 76136501 -45707355 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1165 29 0 0 0 chr11 76137084 76137113 -45706743 + AT_rich Low_complexity Low_complexity 1 29 0 3 1165 800 85 8 0 chr11 76137297 76137415 -45706441 + (TTTC)n Simple_repeat Simple_repeat 3 121 0 3 1165 297 0 0 0 chr11 76137424 76137457 -45706399 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1165 326 183 0 0 chr11 76139210 76139270 -45704586 - MER20 DNA MER1_type -51 168 109 3 1165 358 181 0 27 chr11 76139441 76139515 -45704341 - MTEb LTR MaLR -19 360 289 3 1165 261 307 60 88 chr11 76139616 76139798 -45704058 - MTEb LTR MaLR -169 190 14 3 1165 495 334 68 40 chr11 76140242 76140594 -45703262 + MTEa LTR MaLR 5 366 -13 3 1165 217 318 24 27 chr11 76140707 76140802 -45703054 + MIR SINE MIR 161 256 -12 3 1165 567 0 0 0 chr11 76141204 76141267 -45702589 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1165 604 251 30 48 chr11 76142877 76143044 -45700812 + RSINE1 SINE B4 2 165 0 3 1165 879 270 75 8 chr11 76144351 76144616 -45699240 + B4 SINE B4 1 283 -9 3 1165 180 111 0 0 chr11 76144636 76144663 -45699193 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1165 512 278 9 0 chr11 76144997 76145112 -45698744 + B1F SINE Alu 2 117 -32 3 1165 819 216 133 31 chr11 76145201 76145397 -45698459 - B3 SINE B2 0 216 1 3 1165 426 20 0 0 chr11 76145526 76145577 -45698279 + (GGA)n Simple_repeat Simple_repeat 3 53 0 3 1165 269 224 90 0 chr11 76146407 76146474 -45697382 + ID4 SINE ID 2 74 -9 3 1165 475 250 9 19 chr11 76146507 76146613 -45697243 - PB1D10 SINE Alu -2 115 11 3 1165 952 18 0 0 chr11 76146946 76147056 -45696800 + B1_Mus1 SINE Alu 25 134 -14 3 1165 780 111 0 0 chr11 76147058 76147175 -45696681 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 3 1165 1253 123 11 5 chr11 76147182 76147370 -45696486 + B2_Mm1t SINE B2 2 190 -3 3 1165 270 304 68 43 chr11 76147500 76147617 -45696239 + ID_B1 SINE B4 100 219 -5 3 1165 394 327 0 18 chr11 76147758 76147870 -45695986 + B1F2 SINE Alu 33 142 -7 3 1165 551 188 220 18 chr11 76147919 76148087 -45695769 + B3 SINE B2 1 202 -14 3 1165 612 106 0 0 chr11 76148113 76148207 -45695649 + (GGA)n Simple_repeat Simple_repeat 3 96 0 3 1165 276 203 188 0 chr11 76148625 76148694 -45695162 + ID4_ SINE ID 2 83 0 3 1165 724 184 113 0 chr11 76148964 76149105 -45694751 - MTEa LTR MaLR 0 379 223 3 1165 250 203 42 42 chr11 76149310 76149382 -45694474 + MTEb LTR MaLR 294 365 -14 3 1165 353 245 8 136 chr11 76149599 76149717 -45694139 + MT2B LTR ERVL 155 257 -344 3 1165 987 66 0 68 chr11 76149618 76149765 -45694091 + B1_Mus1 SINE Alu 12 148 0 3 1165 490 231 33 0 chr11 76149918 76150009 -45693847 + RSINE1 SINE B4 2 95 -70 3 1165 366 23 0 0 chr11 76150009 76150052 -45693804 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1165 315 250 73 42 chr11 76150130 76150226 -45693630 + B1F2 SINE Alu 22 120 -29 3 1165 322 292 68 43 chr11 76150186 76150347 -45693509 + B4A SINE B4 57 221 -71 3 1165 647 175 70 16 chr11 76150223 76150351 -45693505 + B1_Mur1 SINE Alu 12 146 -3 3 1165 1057 116 14 0 chr11 76151802 76151949 -45691907 - B1_Mur4 SINE Alu 0 150 2 3 1165 267 269 9 88 chr11 76152212 76152268 -45691588 - LTR41 LTR ERVL -648 120 67 3 1165 855 241 29 5 chr11 76152268 76152472 -45691384 + B3 SINE B2 2 210 -6 3 1165 267 269 9 88 chr11 76152472 76152529 -45691327 - LTR41 LTR ERVL -702 66 16 3 1165 243 295 13 0 chr11 76152574 76152652 -45691204 - ID4 SINE ID -3 80 2 3 145 275 310 218 27 chr11 76152766 76153064 -45690792 - L1MC LINE L1 -2206 5676 5322 3 1166 827 269 47 62 chr11 76153297 76153555 -45690301 - MER2 DNA MER2_type -1 344 91 3 1166 1020 137 7 0 chr11 76153582 76153728 -45690128 - B1_Mur3 SINE Alu -1 148 2 3 1166 202 29 28 28 chr11 76153744 76153780 -45690076 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1166 425 248 16 128 chr11 76153800 76153925 -45689931 - B1F SINE Alu -2 115 5 3 1166 782 254 41 36 chr11 76154165 76154386 -45689470 + ID_B1 SINE B4 3 224 0 3 1166 189 0 0 0 chr11 76154395 76154416 -45689440 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1166 270 0 0 0 chr11 76155138 76155168 -45688688 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1166 202 73 24 24 chr11 76155201 76155243 -45688613 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1166 308 239 27 27 chr11 76155277 76155350 -45688506 + ID4_ SINE ID 3 75 -8 3 1166 29 0 0 0 chr11 76156102 76156131 -45687725 + AT_rich Low_complexity Low_complexity 1 29 0 3 1166 415 316 8 34 chr11 76156131 76156249 -45687607 - PB1D10 SINE Alu -2 115 1 3 1166 1274 79 0 0 chr11 76157670 76157834 -45686022 - B2_Mm2 SINE B2 -31 164 1 3 1166 345 47 0 0 chr11 76158297 76158340 -45685516 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1166 557 287 0 8 chr11 76158360 76158483 -45685373 - B3A SINE B2 -75 123 2 3 1166 421 342 44 6 chr11 76158541 76158700 -45685156 - RSINE1 SINE B4 0 165 1 3 1166 1198 198 14 0 chr11 76158744 76158951 -45684905 + B3 SINE B2 5 214 -2 3 1166 751 224 0 15 chr11 76158956 76159092 -45684764 - B1_Mur1 SINE Alu -6 143 10 3 1166 401 269 129 0 chr11 76159123 76159216 -45684640 - B1_Mur2 SINE Alu -39 110 6 3 1166 350 361 75 8 chr11 76159216 76159243 -45684613 - ID_B1 SINE B4 -36 188 61 3 1166 339 296 10 11 chr11 76159285 76159387 -45684469 - B1_Mus2 SINE Alu -8 109 9 3 1166 2509 143 128 64 chr11 76159462 76159531 -45684325 + RLTR20D LTR ERVK 19 76 -492 3 1166 1632 52 0 0 chr11 76159531 76159724 -45684132 - B2_Mm1a SINE B2 0 193 1 3 1166 2509 143 128 64 chr11 76159724 76160106 -45683750 + RLTR20D LTR ERVK 77 476 -92 3 1166 279 0 0 0 chr11 76160106 76160137 -45683719 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1166 2509 143 128 64 chr11 76160137 76160201 -45683655 + RLTR20D LTR ERVK 477 568 0 3 1166 627 283 17 46 chr11 76160201 76160375 -45683481 - B3A SINE B2 -29 169 1 3 1166 332 259 126 40 chr11 76161590 76161754 -45682102 + MTD LTR MaLR 11 180 -199 3 1166 308 217 19 41 chr11 76161754 76161853 -45682003 + RSINE1 SINE B4 2 93 -199 3 1166 1147 68 0 39 chr11 76162197 76162350 -45681506 + B1_Mus2 SINE Alu 1 147 0 3 1166 503 229 203 0 chr11 76162716 76162834 -45681022 - ID_B1 SINE B4 -1 223 82 3 1166 624 226 96 35 chr11 76162860 76163057 -45680799 - L1MB3 LINE L1 -1 6182 5974 3 1166 194 0 0 37 chr11 76163416 76163443 -45680413 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1166 1905 232 11 22 chr11 76163726 76164188 -45679668 - Lx6 LINE L1 -9 7451 6995 3 1166 284 306 120 92 chr11 76164295 76164580 -45679276 - Tigger12A DNA MER2_type -264 527 235 4 1166 347 264 60 60 chr11 76164578 76164695 -45679161 - Tigger12A DNA MER2_type -467 126 10 4 1166 225 0 0 0 chr11 76164718 76164743 -45679113 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1166 535 122 19 84 chr11 76164771 76164878 -45678978 + PB1D9 SINE Alu 21 120 0 4 1166 221 186 0 23 chr11 76164881 76164925 -45678931 + GA-rich Low_complexity Low_complexity 2 44 0 4 1166 213 135 27 0 chr11 76165006 76165043 -45678813 + GA-rich Low_complexity Low_complexity 5 42 0 4 1166 217 162 14 14 chr11 76165456 76165525 -45678331 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1166 895 140 21 14 chr11 76165809 76165954 -45677902 - B1_Mur4 SINE Alu 0 150 5 4 1166 222 310 24 12 chr11 76166691 76166776 -45677080 - MIRb SINE MIR -180 88 3 4 1166 277 205 176 33 chr11 76167207 76167267 -45676589 + MT2B LTR ERVL 185 257 -344 4 1166 361 179 186 0 chr11 76167267 76167349 -45676507 + B1F2 SINE Alu 1 96 -53 4 1166 658 159 23 198 chr11 76167397 76167479 -45676377 + B1_Mur2 SINE Alu 1 66 -83 4 1166 1181 57 0 0 chr11 76167479 76167620 -45676236 - B1_Mus1 SINE Alu -6 142 2 4 1166 658 159 23 198 chr11 76167620 76167709 -45676147 + B1_Mur2 SINE Alu 67 142 -7 4 1166 35 24 0 0 chr11 76169285 76169327 -45674529 + AT_rich Low_complexity Low_complexity 1 42 0 4 1166 472 226 56 19 chr11 76169355 76169463 -45674393 - RSINE1 SINE B4 -5 160 49 4 1166 223 236 41 14 chr11 76169652 76169725 -45674131 + ID4 SINE ID 1 75 -8 4 1166 271 279 153 58 chr11 76169740 76169877 -45673979 - MER5A DNA MER1_type -35 154 5 4 1166 1269 28 0 0 chr11 76169957 76170098 -45673758 - B1_Mm SINE Alu -6 141 1 4 1166 308 302 39 85 chr11 76170284 76170414 -45673442 - PB1 SINE Alu -3 124 1 4 1166 254 348 59 9 chr11 76170456 76170597 -45673259 + MLT2B5 LTR ERVL 120 267 -248 4 1166 229 177 0 127 chr11 76170597 76170668 -45673188 + RLTR10B LTR ERVK 158 219 -73 4 1166 263 122 41 0 chr11 76170841 76170890 -45672966 - PB1D10 SINE Alu -34 83 33 4 1166 413 245 198 58 chr11 76173527 76173770 -45670086 + B4 SINE B4 2 278 -14 4 1166 288 53 0 0 chr11 76173780 76173818 -45670038 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1166 717 274 100 56 chr11 76174264 76174515 -45669341 + B4 SINE B4 6 267 -25 4 1166 485 204 7 0 chr11 76174543 76174695 -45669161 + (CA)n Simple_repeat Simple_repeat 1 153 0 4 1166 357 60 0 20 chr11 76174695 76174746 -45669110 + HAL1-3A_ME LINE L1 1976 2025 -833 4 1166 290 223 231 0 chr11 76175222 76175343 -45668513 - B1_Mur1 SINE Alu 0 149 1 4 1166 966 239 0 25 chr11 76175350 76175552 -45668304 - B3A SINE B2 -1 197 1 4 1166 734 227 117 10 chr11 76175800 76175996 -45667860 + B4A SINE B4 1 217 -75 4 1166 401 179 11 62 chr11 76176006 76176185 -45667671 + (CATATA)n Simple_repeat Simple_repeat 2 171 0 4 1166 413 169 33 26 chr11 76176207 76176359 -45667497 + (CA)n Simple_repeat Simple_repeat 1 153 0 4 1166 212 122 0 24 chr11 76177129 76177171 -45666685 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 1166 363 224 172 106 chr11 76177830 76178010 -45665846 + B4 SINE B4 33 224 -68 4 1166 895 68 0 0 chr11 76177895 76178012 -45665844 + B1_Mus1 SINE Alu 32 148 0 4 1166 186 71 0 0 chr11 76178012 76178040 -45665816 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1166 237 196 20 0 chr11 76178232 76178283 -45665573 + ID4_ SINE ID 1 52 -31 4 1166 250 284 14 0 chr11 76178435 76178509 -45665347 - ID4 SINE ID 0 83 9 4 1166 383 301 91 57 chr11 76178841 76178910 -45664946 - B4 SINE B4 0 292 111 4 1166 499 170 168 9 chr11 76178910 76179017 -45664839 - B1F2 SINE Alu 0 149 26 4 1166 21 36 0 0 chr11 76179088 76179116 -45664740 + AT_rich Low_complexity Low_complexity 1 28 0 4 1166 470 241 76 25 chr11 76179917 76180036 -45663820 + B3A SINE B2 38 162 -36 4 1166 919 208 6 0 chr11 76180068 76180241 -45663615 + B3 SINE B2 3 176 -40 4 1166 1127 246 38 29 chr11 76180536 76180850 -45663006 + RMER1C Other Other 749 1065 -277 4 1166 388 252 98 0 chr11 76180862 76181005 -45662851 + Lx8 LINE L1 6919 7075 -398 4 1166 370 164 0 0 chr11 76181010 76181065 -45662791 - B3 SINE B2 -74 142 88 4 1166 286 219 45 45 chr11 76181041 76181108 -45662748 - B2_Mm2 SINE B2 -128 67 1 4 1166 696 127 0 0 chr11 76181119 76181229 -45662627 + (TG)n Simple_repeat Simple_repeat 2 111 0 4 1166 896 161 7 35 chr11 76181234 76181376 -45662480 - B1_Mur3 SINE Alu -11 138 1 4 1166 21 0 0 0 chr11 76181376 76181397 -45662459 + AT_rich Low_complexity Low_complexity 1 21 0 4 1166 1197 31 206 0 chr11 76181936 76182096 -45661760 + B2_Mm1a SINE B2 1 193 0 4 1166 192 418 30 24 chr11 76182097 76182266 -45661590 + MIRb SINE MIR 47 216 -52 4 1166 303 350 93 61 chr11 76182822 76183019 -45660837 + B4 SINE B4 2 194 -98 4 1166 234 0 0 0 chr11 76183019 76183045 -45660811 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1166 303 350 93 61 chr11 76183045 76183127 -45660729 + B4 SINE B4 195 289 -3 4 1166 227 224 134 0 chr11 76183554 76183621 -45660235 + ID4_ SINE ID 2 77 -6 4 1166 464 237 11 0 chr11 76183629 76183722 -45660134 + ID_B1 SINE B4 128 221 -3 4 1166 183 184 0 0 chr11 76183723 76183761 -45660095 + GA-rich Low_complexity Low_complexity 1 38 0 4 1166 724 9 48 0 chr11 76183931 76184036 -45659820 + (TC)n Simple_repeat Simple_repeat 1 110 0 4 1166 323 191 0 16 chr11 76184325 76184389 -45659467 - MLT1A1 LTR MaLR 0 408 346 4 1166 588 271 68 57 chr11 76184883 76185075 -45658781 - B3A SINE B2 -4 194 1 4 1166 263 289 76 34 chr11 76185205 76185323 -45658533 + MIRb SINE MIR 114 236 -32 4 1166 479 17 17 0 chr11 76186428 76186488 -45657368 + (GAAAA)n Simple_repeat Simple_repeat 3 63 0 4 1166 195 129 0 0 chr11 76186607 76186638 -45657218 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1166 236 222 63 0 chr11 76187729 76187792 -45656064 + ID4 SINE ID 17 83 0 4 1166 750 149 58 0 chr11 76188814 76188935 -45654921 + B1_Mus1 SINE Alu 1 128 -20 4 1166 666 82 0 0 chr11 76188941 76189039 -45654817 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 4 1166 720 266 103 5 chr11 76189050 76189254 -45654602 + ID_B1 SINE B4 1 224 0 4 1166 638 188 0 26 chr11 76189790 76189905 -45653951 + PB1D10 SINE Alu 6 117 0 4 1166 833 276 34 46 chr11 76189892 76190154 -45653702 - MER33 DNA MER1_type -65 259 1 4 1166 462 299 37 43 chr11 76190353 76190517 -45653339 - RSINE1 SINE B4 -1 164 2 4 1166 266 230 0 139 chr11 76190519 76190620 -45653236 - MER82 DNA MER2_type -383 270 184 4 1166 420 285 128 0 chr11 76190674 76190846 -45653010 - MER82 DNA MER2_type -459 194 1 4 1166 589 263 22 0 chr11 76191140 76191277 -45652579 + MER82 DNA MER2_type 38 177 -476 4 1166 230 317 83 24 chr11 76191280 76191364 -45652492 - MER44B DNA MER2_type -9 541 453 4 1166 617 234 34 74 chr11 76191389 76191564 -45652292 - MER44B DNA MER2_type -203 347 180 4 1166 579 283 45 100 chr11 76191775 76191865 -45651991 - MER44B DNA MER2_type -342 208 135 4 1166 450 208 0 0 chr11 76191865 76191937 -45651919 - ID4_ SINE ID -11 72 1 4 1166 595 272 1 10 chr11 76191937 76192066 -45651790 - MER44B DNA MER2_type -416 134 1 4 1166 804 246 37 50 chr11 76192644 76192862 -45650994 + B3 SINE B2 1 215 -1 4 1166 591 177 112 8 chr11 76192875 76193000 -45650856 - B1_Mur2 SINE Alu -10 139 2 4 1166 484 335 0 47 chr11 76193054 76193226 -45650630 + ID_B1 SINE B4 8 171 -53 4 1166 218 233 0 0 chr11 76194103 76194146 -45649710 + MIR SINE MIR 110 152 -56 4 1166 842 157 0 0 chr11 76194147 76194287 -45649569 + B1_Mur3 SINE Alu 5 144 -5 4 1166 490 259 146 7 chr11 76194540 76194684 -45649172 - B4 SINE B4 -127 165 2 4 1166 184 362 89 31 chr11 76195007 76195198 -45648658 + L2c LINE L2 3013 3214 -173 4 1166 307 355 99 48 chr11 76195386 76195470 -45648386 - L1ME4a LINE L1 -98 6026 5951 4 1166 1265 80 16 49 chr11 76195470 76195655 -45648201 + B2_Mm2 SINE B2 2 180 -15 4 1166 307 355 99 48 chr11 76195655 76195863 -45647993 - L1ME4a LINE L1 -174 5950 5719 4 1166 301 237 35 35 chr11 76195983 76196088 -45647768 - B4A SINE B4 -163 129 25 4 1166 1015 129 0 20 chr11 76196928 76197078 -45646778 + B1_Mus1 SINE Alu 2 148 0 4 1166 786 188 0 39 chr11 76197107 76197262 -45646594 + B1_Mur1 SINE Alu 1 149 0 4 1166 335 330 0 0 chr11 76198324 76198418 -45645438 - PB1D10 SINE Alu 0 117 24 4 1166 235 366 161 7 chr11 76199019 76199162 -45644694 + L3 LINE CR1 3115 3279 -1210 4 1166 184 279 111 44 chr11 76199291 76199381 -45644475 + L3 LINE CR1 3589 3684 -805 4 1166 1277 62 22 38 chr11 76199741 76199752 -45644104 - B2_Mm2 SINE B2 -14 181 174 4 1166 1452 76 16 0 chr11 76199752 76199936 -45643920 - B2_Mm2 SINE B2 -7 188 2 4 1166 1277 62 22 38 chr11 76199936 76200108 -45643748 - B2_Mm2 SINE B2 -22 173 1 4 1166 420 91 0 0 chr11 76200144 76200210 -45643646 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1166 431 316 166 4 chr11 76200219 76200454 -45643402 - B4A SINE B4 -19 273 1 4 1166 784 220 32 49 chr11 76200679 76200897 -45642959 + B3A SINE B2 11 216 0 4 1166 380 313 28 72 chr11 76201199 76201450 -45642406 - MIR SINE MIR -22 240 1 4 1166 273 57 0 0 chr11 76202434 76202469 -45641387 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1166 234 0 0 0 chr11 76203202 76203228 -45640628 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1166 426 101 0 0 chr11 76203228 76203296 -45640560 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1166 799 219 44 27 chr11 76203309 76203492 -45640364 + B3A SINE B2 13 198 0 4 1166 718 199 7 66 chr11 76203501 76203652 -45640204 + B1_Mur1 SINE Alu 7 148 -1 4 1166 308 219 110 0 chr11 76203678 76203760 -45640096 + PB1D10 SINE Alu 27 117 0 4 1166 266 188 15 15 chr11 76203760 76203825 -45640031 + A-rich Low_complexity Low_complexity 2 66 0 4 1166 769 106 97 0 chr11 76203846 76203959 -45639897 - B1_Mus2 SINE Alu -22 125 2 5 1166 505 231 34 82 chr11 76203959 76204005 -45639851 - MT2B LTR ERVL -437 164 126 5 1166 730 188 7 39 chr11 76204184 76204341 -45639515 + B1_Mur3 SINE Alu 1 148 -1 5 1166 382 304 36 0 chr11 76204687 76204799 -45639057 + RSINE1 SINE B4 3 118 -47 5 1166 1035 24 0 8 chr11 76204831 76204958 -45638898 + B2_Mm2 SINE B2 1 126 -69 5 1166 21 0 0 0 chr11 76204958 76204979 -45638877 + AT_rich Low_complexity Low_complexity 1 21 0 5 1166 1179 93 19 0 chr11 76205006 76205168 -45638688 + B2_Mm2 SINE B2 1 165 -30 5 1166 261 370 22 7 chr11 76205595 76205734 -45638122 + Charlie10 DNA MER1_type 34 174 -2648 5 1166 180 111 0 0 chr11 76206377 76206404 -45637452 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1166 3228 39 39 0 chr11 76207074 76207455 -45636401 + MTA_Mm LTR MaLR 1 396 0 5 1166 701 289 44 10 chr11 76207500 76207706 -45636150 + ID_B1 SINE B4 10 222 -2 5 1166 779 122 0 9 chr11 76207721 76207837 -45636019 + B1_Mur4 SINE Alu 36 150 0 5 1166 185 154 26 0 chr11 76207845 76207884 -45635972 + GA-rich Low_complexity Low_complexity 2 41 0 5 1166 534 241 35 7 chr11 76207949 76208091 -45635765 - MIR SINE MIR -51 211 66 5 1166 233 77 0 49 chr11 76209971 76209986 -45633870 + (T)n Simple_repeat Simple_repeat 1 15 0 5 1166 1216 55 0 0 chr11 76209986 76210132 -45633724 - B1_Mm SINE Alu 0 147 2 5 1166 207 0 0 0 chr11 76210132 76210155 -45633701 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1166 233 77 0 49 chr11 76210155 76210179 -45633677 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1166 245 267 76 51 chr11 76210259 76210338 -45633518 + ID4 SINE ID 1 81 -2 5 1166 225 108 0 0 chr11 76210341 76210378 -45633478 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 5 1166 26 0 0 0 chr11 76212169 76212195 -45631661 + GC_rich Low_complexity Low_complexity 1 26 0 5 1166 205 241 0 0 chr11 76212319 76212373 -45631483 + C-rich Low_complexity Low_complexity 6 59 0 5 1166 246 32 0 0 chr11 76213786 76213817 -45630039 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1166 561 165 209 0 chr11 76214010 76214125 -45629731 + B1_Mur2 SINE Alu 10 148 -1 5 1166 360 0 0 0 chr11 76214140 76214180 -45629676 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1166 332 263 124 21 chr11 76214186 76214283 -45629573 - B3A SINE B2 -88 110 4 5 1166 398 245 27 36 chr11 76214319 76214429 -45629427 + PB1D10 SINE Alu 5 113 -4 5 1166 1491 67 0 20 chr11 76214458 76214655 -45629201 + B2_Mm1t SINE B2 1 193 0 5 1166 664 164 119 32 chr11 76214787 76214913 -45628943 + B1_Mur2 SINE Alu 2 138 -11 5 1166 323 239 0 53 chr11 76215593 76215668 -45628188 + ID4_ SINE ID 13 83 0 5 1166 229 200 0 0 chr11 76215679 76215719 -45628137 + RSINE1 SINE B4 1 40 -125 5 1166 1125 165 239 80 chr11 76215722 76215815 -45628041 - MTC LTR MaLR 0 407 293 5 1166 309 26 0 0 chr11 76215815 76215853 -45628003 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1166 1125 193 177 11 chr11 76215853 76215922 -45627934 - MTC LTR MaLR -125 296 211 5 1166 1037 93 153 6 chr11 76215922 76216085 -45627771 - B2_Mm2 SINE B2 -8 187 1 5 1166 1125 193 177 11 chr11 76216085 76216219 -45627637 - MTC LTR MaLR -211 210 65 5 1166 212 163 0 0 chr11 76216224 76216267 -45627589 + CT-rich Low_complexity Low_complexity 1 43 0 5 1166 674 203 44 15 chr11 76216269 76216404 -45627452 - B1_Mus1 SINE Alu -8 140 2 5 1166 384 274 32 0 chr11 76216405 76216500 -45627356 - MTC LTR MaLR -323 98 1 5 1166 388 247 11 45 chr11 76216520 76216609 -45627247 + RSINE1 SINE B4 54 139 -26 5 1166 470 17 0 17 chr11 76216612 76216672 -45627184 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1166 1083 207 21 0 chr11 76216690 76216883 -45626973 + B3 SINE B2 1 197 -19 5 1166 336 237 133 76 chr11 76216917 76217016 -45626840 + PB1D10 SINE Alu 7 112 -5 5 1166 797 206 0 14 chr11 76217016 76217159 -45626697 - B1_Mur3 SINE Alu -8 141 1 5 1166 644 290 16 26 chr11 76217340 76217583 -45626273 - MLT2B4 LTR ERVL -279 241 2 5 1166 346 272 25 98 chr11 76217600 76217763 -45626093 + B3 SINE B2 66 216 0 5 1166 718 203 20 27 chr11 76217871 76218018 -45625838 - B1_Mur1 SINE Alu -1 148 3 5 1166 275 224 184 0 chr11 76218019 76218095 -45625761 + B3 SINE B2 125 214 -2 5 1166 864 100 56 14 chr11 76218312 76218454 -45625402 + B1_Mur3 SINE Alu 1 148 -1 5 1166 669 180 49 63 chr11 76218545 76218687 -45625169 + B1_Mur2 SINE Alu 2 141 -8 5 1166 182 62 0 30 chr11 76218690 76218723 -45625133 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1166 711 250 70 0 chr11 76218737 76218893 -45624963 + B3A SINE B2 10 176 -22 5 1166 459 0 0 0 chr11 76219354 76219405 -45624451 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1166 971 222 24 5 chr11 76219501 76219709 -45624147 + B3 SINE B2 5 216 0 5 1166 381 22 0 0 chr11 76219882 76219928 -45623928 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1166 683 180 35 21 chr11 76219928 76220070 -45623786 - B1_Mur4 SINE Alu -6 144 1 5 1166 186 43 0 0 chr11 76221378 76221401 -45622455 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 5 1166 225 0 0 0 chr11 76221502 76221527 -45622329 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1166 351 0 0 0 chr11 76221607 76221646 -45622210 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1166 1220 36 0 0 chr11 76221753 76221892 -45621964 + B1_Mus1 SINE Alu 1 139 -9 5 1166 207 0 0 0 chr11 76221892 76221915 -45621941 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1166 593 167 18 9 chr11 76221918 76222027 -45621829 + B1_Mur2 SINE Alu 40 149 0 5 1166 787 249 9 181 chr11 76222206 76222549 -45621307 + B4 SINE B4 3 286 -6 5 1166 211 254 18 35 chr11 76222603 76222660 -45621196 + MIRc SINE MIR 75 130 -138 5 1166 618 169 73 8 chr11 76222669 76222809 -45621047 + B1_Mur1 SINE Alu 1 148 -2 5 1166 273 57 0 0 chr11 76223428 76223463 -45620393 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1166 739 229 123 6 chr11 76223463 76223634 -45620222 - B3 SINE B2 -23 193 3 5 1166 853 183 0 7 chr11 76223645 76223788 -45620068 - B1_Mur1 SINE Alu -6 143 2 5 1166 296 219 36 0 chr11 76223865 76223954 -45619902 + PB1D10 SINE Alu 15 105 -12 5 1166 1262 102 45 0 chr11 76224058 76224235 -45619621 - B2_Mm2 SINE B2 -9 186 2 5 1166 316 347 0 0 chr11 76224273 76224291 -45619565 - BC1_Mm scRNA scRNA -53 99 2 5 1166 356 275 12 0 chr11 76224291 76224371 -45619485 - ID SINE ID -142 82 2 5 1166 1581 42 5 20 chr11 76224929 76225125 -45618731 + B2_Mm1a SINE B2 1 193 0 5 1166 963 185 99 11 chr11 76225143 76225334 -45618522 - B3 SINE B2 -8 208 1 5 1166 1086 89 7 0 chr11 76225777 76225923 -45617933 - B1_Mus2 SINE Alu 0 147 1 5 1166 1066 107 136 0 chr11 76225981 76226150 -45617706 - B2_Mm1t SINE B2 0 193 2 5 1166 610 251 143 30 chr11 76226302 76226470 -45617386 + B3A SINE B2 3 189 -9 5 1166 1158 75 7 0 chr11 76226475 76226622 -45617234 + B1_Mus1 SINE Alu 1 148 0 5 1166 208 135 0 0 chr11 76226623 76226660 -45617196 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1166 720 193 201 17 chr11 76227220 76227399 -45616457 - B3 SINE B2 0 216 5 5 1166 693 65 0 0 chr11 76228113 76228206 -45615650 + BC1_Mm scRNA scRNA 1 93 -59 5 1166 741 176 144 12 chr11 76228218 76228385 -45615471 + B3 SINE B2 1 189 -27 5 1166 180 228 84 48 chr11 76229664 76229747 -45614109 - L4 LINE RTE -1339 690 605 5 1166 320 299 67 25 chr11 76233710 76233830 -45610026 - MIR SINE MIR -105 157 33 5 1166 468 0 0 0 chr11 76234351 76234403 -45609453 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1166 439 300 164 0 chr11 76235113 76235253 -45608603 + RSINE1 SINE B4 3 165 0 5 1166 255 331 52 1 chr11 76237257 76237370 -45606486 + MIRc SINE MIR 37 159 -117 5 1166 241 329 0 0 chr11 76237904 76237974 -45605882 + ID2 SINE ID 13 82 -1 5 1166 724 240 62 0 chr11 76239277 76239469 -45604387 - Charlie2b DNA MER1_type -69 2713 2510 5 1166 457 231 39 0 chr11 76240243 76240347 -45603509 - PB1D10 SINE Alu -7 110 3 5 1166 1157 61 0 7 chr11 76244187 76244335 -45599521 + B1_Mus2 SINE Alu 1 147 0 5 1166 180 265 61 0 chr11 76244820 76244869 -45598987 + MIRc SINE MIR 113 164 -104 5 1166 968 110 0 7 chr11 76245128 76245265 -45598591 + B1_Mur3 SINE Alu 1 136 -13 5 1166 402 266 152 8 chr11 76247109 76247234 -45596622 - B1F1 SINE Alu 0 149 7 5 1166 185 167 0 0 chr11 76249596 76249626 -45594230 - MIRb SINE MIR -17 251 222 5 1166 465 19 0 0 chr11 76249955 76250009 -45593847 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1166 235 232 0 18 chr11 76250753 76250810 -45593046 + CT-rich Low_complexity Low_complexity 1 56 0 5 1166 592 205 142 0 chr11 76251706 76251833 -45592023 - B1_Mus2 SINE Alu -1 146 2 5 1166 189 0 0 0 chr11 76254298 76254319 -45589537 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 5 1166 2671 120 74 2 chr11 76254615 76255008 -45588848 + MTC LTR MaLR 1 421 0 5 1166 331 299 102 8 chr11 76256154 76256272 -45587584 - B3 SINE B2 -65 130 2 5 1166 752 211 0 14 chr11 76256618 76256762 -45587094 - B1_Mur1 SINE Alu -6 143 2 5 1166 697 71 15 6 chr11 76256776 76256884 -45586972 - B1_Mm SINE Alu -5 142 1 5 1166 234 0 0 0 chr11 76256884 76256910 -45586946 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1166 841 164 0 21 chr11 76257917 76258060 -45585796 + B1_Mur4 SINE Alu 11 150 0 6 1166 198 103 0 0 chr11 76258571 76258600 -45585256 + (TGG)n Simple_repeat Simple_repeat 2 30 0 6 1166 746 148 8 8 chr11 76258612 76258741 -45585115 + B1_Mur4 SINE Alu 22 150 0 6 1166 207 0 0 0 chr11 76260203 76260226 -45583630 + (GGAAA)n Simple_repeat Simple_repeat 5 27 0 6 1166 230 256 188 0 chr11 76260263 76260396 -45583460 + L1MB3 LINE L1 5938 6095 -88 6 1166 255 268 0 0 chr11 76260402 76260458 -45583398 + RSINE1 SINE B4 99 154 -11 6 1166 538 244 8 47 chr11 76260520 76260649 -45583207 + ID_B1 SINE B4 86 209 -15 6 1166 181 337 34 23 chr11 76262601 76262689 -45581167 + MIRb SINE MIR 118 206 -62 6 1166 552 254 99 17 chr11 76264110 76264282 -45579574 + B3 SINE B2 27 212 -4 6 1166 1330 89 15 30 chr11 76264307 76264505 -45579351 + B2_Mm2 SINE B2 1 195 0 6 1166 180 363 41 69 chr11 76265339 76265484 -45578372 + L2 LINE L2 822 962 -2457 6 1166 223 196 14 5 chr11 76266540 76266601 -45577255 + MIR SINE MIR 100 169 -107 6 1166 1322 98 22 0 chr11 76266635 76266819 -45577037 + B2_Mm2 SINE B2 2 189 -6 6 1166 1169 78 82 24 chr11 76266822 76266967 -45576889 + B2_Mm1a SINE B2 2 160 -33 6 1166 294 29 0 0 chr11 76266967 76267002 -45576854 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1166 1169 78 82 24 chr11 76267002 76267026 -45576830 + B2_Mm1a SINE B2 161 181 -12 6 1166 709 221 0 45 chr11 76267030 76267186 -45576670 + B1_Mur1 SINE Alu 1 149 0 6 1166 234 227 0 0 chr11 76267198 76267242 -45576614 + ID4_ SINE ID 8 51 -32 6 1166 714 204 14 35 chr11 76267350 76267492 -45576364 + B1_Mur3 SINE Alu 6 144 -5 6 1166 767 169 74 7 chr11 76267527 76267676 -45576180 - B3 SINE B2 -7 209 51 6 1166 254 289 0 4 chr11 76267685 76267755 -45576101 - MIRc SINE MIR -129 147 80 6 1166 257 100 19 57 chr11 76268523 76268576 -45575280 + B1F2 SINE Alu 10 60 -89 6 1166 251 210 33 63 chr11 76268576 76268631 -45575225 + ID_B1 SINE B4 91 199 -93 6 1166 260 280 175 62 chr11 76270305 76270465 -45573391 + MER74A LTR ERVL 1 178 -380 6 1166 728 275 80 25 chr11 76270712 76270988 -45572868 - B4A SINE B4 0 292 2 6 1166 408 67 0 0 chr11 76271314 76271374 -45572482 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1166 534 244 8 16 chr11 76271504 76271625 -45572231 - RSINE1 SINE B4 -44 121 2 6 1166 422 64 0 60 chr11 76271716 76271799 -45572057 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 6 1166 994 54 0 0 chr11 76271815 76271944 -45571912 - B1_Mus1 SINE Alu 0 148 20 6 1166 290 274 7 49 chr11 76271974 76272116 -45571740 - RMER17C LTR ERVK -135 275 140 6 1166 732 199 0 37 chr11 76273288 76273424 -45570432 + B1_Mur2 SINE Alu 1 131 -18 6 1166 426 39 0 0 chr11 76273426 76273478 -45570378 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1166 414 331 74 0 chr11 76273881 76274044 -45569812 + MIRb SINE MIR 85 259 -9 6 1166 349 265 27 102 chr11 76274175 76274322 -45569534 + MT2B LTR ERVL 123 258 -343 6 1166 686 163 29 22 chr11 76274226 76274364 -45569492 + B1_Mur2 SINE Alu 9 147 -2 6 1166 198 0 0 0 chr11 76274527 76274549 -45569307 + (TAA)n Simple_repeat Simple_repeat 2 23 0 6 1166 225 307 148 0 chr11 76274611 76274699 -45569157 - PB1D7 SINE Alu -19 101 1 6 1166 241 274 0 60 chr11 76276258 76276425 -45567431 + (CAGCC)n Simple_repeat Simple_repeat 3 159 0 6 1166 994 132 28 0 chr11 76276750 76276894 -45566962 - B1_Mur4 SINE Alu -1 149 2 6 1166 217 307 33 22 chr11 76278842 76278932 -45564924 + MER5B DNA MER1_type 15 105 -73 6 1166 612 73 0 0 chr11 76279016 76279098 -45564758 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1166 1250 34 7 0 chr11 76279102 76279249 -45564607 - B1_Mus1 SINE Alu 0 148 1 6 1166 187 356 157 7 chr11 76280045 76280192 -45563664 - MIRb SINE MIR -52 216 48 6 1166 180 0 0 0 chr11 76281892 76281912 -45561944 + (CTG)n Simple_repeat Simple_repeat 3 22 0 6 1166 188 67 33 0 chr11 76281996 76282026 -45561830 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 6 1166 234 0 0 0 chr11 76282096 76282122 -45561734 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1167 200 111 28 0 chr11 76283919 76283955 -45559901 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1167 688 176 0 32 chr11 76283966 76284089 -45559767 - B1_Mur1 SINE Alu -6 143 25 6 1167 685 152 141 23 chr11 76284453 76284581 -45559275 + B1F1 SINE Alu 5 147 -2 6 1167 1141 78 0 0 chr11 76284813 76284954 -45558902 - B1_Mus1 SINE Alu -7 141 1 6 1167 1274 107 11 6 chr11 76284998 76285177 -45558679 + B2_Mm2 SINE B2 1 180 -15 6 1167 243 204 0 0 chr11 76285273 76285322 -45558534 + PB1D7 SINE Alu 14 62 -58 6 1167 430 308 109 18 chr11 76285438 76285627 -45558229 - B3A SINE B2 -9 207 2 6 1167 183 267 51 39 chr11 76285640 76285718 -45558138 - MIRc SINE MIR -90 178 100 6 1167 247 333 0 14 chr11 76287061 76287131 -45556725 + MER3 DNA MER1_type 52 120 -89 6 1167 357 257 120 0 chr11 76287139 76287259 -45556597 + B1_Mur1 SINE Alu 13 148 -1 6 1167 636 245 29 0 chr11 76287359 76287498 -45556358 - ID_B1 SINE B4 -2 222 80 6 1167 800 39 0 0 chr11 76287525 76287629 -45556227 - B1_Mus2 SINE Alu 0 147 44 6 1167 258 262 118 147 chr11 76287685 76287763 -45556093 - RSINE1 SINE B4 0 165 108 6 1167 1042 192 45 0 chr11 76287763 76287961 -45555895 + B3 SINE B2 1 207 -9 6 1167 258 262 118 147 chr11 76287961 76288052 -45555804 - RSINE1 SINE B4 -58 107 1 6 1167 308 340 19 0 chr11 76288082 76288185 -45555671 - PB1 SINE Alu -18 109 5 6 1167 354 194 45 0 chr11 76288308 76288375 -45555481 + ID4_ SINE ID 3 72 -11 6 1167 285 29 0 0 chr11 76288380 76288414 -45555442 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1167 425 254 195 0 chr11 76288460 76288578 -45555278 + RSINE1 SINE B4 2 142 -23 6 1167 271 312 66 54 chr11 76288991 76289025 -45554831 + YREP_Mm Unknown Unknown 139 306 -1506 6 1167 717 165 0 38 chr11 76289025 76289157 -45554699 - ID_B1 SINE B4 -7 217 91 6 1167 328 227 0 51 chr11 76289181 76289260 -45554596 - PB1D10 SINE Alu 0 117 43 6 1167 398 275 0 56 chr11 76289294 76289402 -45554454 + RSINE1 SINE B4 2 103 -62 6 1167 222 37 0 0 chr11 76289485 76289512 -45554344 + (GGA)n Simple_repeat Simple_repeat 1 27 0 6 1167 1710 21 0 0 chr11 76289534 76289726 -45554130 + B2_Mm1a SINE B2 2 193 0 6 1167 977 229 27 18 chr11 76290308 76290530 -45553326 - ID_B1 SINE B4 0 224 1 6 1167 271 271 42 127 chr11 76290928 76291093 -45552763 + MT2B2 LTR ERVL 91 241 -343 6 1167 431 206 48 29 chr11 76291020 76291125 -45552731 + PB1D7 SINE Alu 14 120 0 6 1167 283 265 147 0 chr11 76291410 76291546 -45552310 - MIRb SINE MIR -100 168 13 6 1167 381 150 114 50 chr11 76293161 76293262 -45550594 + PB1D7 SINE Alu 13 118 -2 6 1167 266 328 42 33 chr11 76293286 76293406 -45550450 - MER117 DNA MER1_type -7 190 70 6 1167 181 246 145 0 chr11 76294080 76294149 -45549707 + MIRb SINE MIR 46 124 -144 6 1167 934 222 63 10 chr11 76294262 76294467 -45549389 + B3 SINE B2 1 216 0 6 1167 1159 68 7 0 chr11 76294486 76294632 -45549224 + B1_Mus2 SINE Alu 1 147 0 6 1167 557 53 0 0 chr11 76294654 76294729 -45549127 + BC1_Mm scRNA scRNA 1 75 -77 6 1167 387 0 0 0 chr11 76294730 76294773 -45549083 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1167 277 295 53 46 chr11 76294892 76295055 -45548801 - L2a LINE L2 -94 3332 3133 6 1167 186 400 25 0 chr11 76297691 76297771 -45546085 - MIR SINE MIR -68 194 113 6 1167 576 286 88 39 chr11 76297978 76298262 -45545594 + MER44A DNA MER2_type 41 338 -1 6 1167 525 259 0 25 chr11 76298353 76298472 -45545384 - PB1D10 SINE Alu 0 117 2 6 1167 482 288 13 46 chr11 76298479 76298632 -45545224 + ID_B1 SINE B4 56 203 -21 6 1167 410 206 130 0 chr11 76299139 76299231 -45544625 - B1F1 SINE Alu 0 149 46 6 1167 431 314 0 0 chr11 76300180 76300298 -45543558 - PB1D7 SINE Alu -1 119 2 6 1167 294 331 88 7 chr11 76301169 76301306 -45542550 - L2c LINE L2 0 3387 3240 6 1167 3784 29 13 7 chr11 76301799 76302246 -45541610 + L1Md_F2 LINE L1 6131 6580 -2 6 1167 196 238 296 24 chr11 76302953 76303078 -45540778 - MIRb SINE MIR -4 264 106 6 1167 534 192 0 0 chr11 76304625 76304734 -45539122 - B1_Mur4 SINE Alu -11 109 2 6 1167 324 289 108 0 chr11 76304746 76304912 -45538944 - MER113A DNA MER1_type -128 186 3 6 1167 702 237 7 0 chr11 76305642 76305781 -45538075 - B1F SINE Alu -7 142 3 6 1167 417 86 0 0 chr11 76307936 76307994 -45535862 + (CAG)n Simple_repeat Simple_repeat 1 58 0 6 1167 266 322 62 35 chr11 76309461 76309644 -45534212 - B3A SINE B2 0 216 27 6 1167 582 179 35 9 chr11 76309676 76309789 -45534067 - PB1D9 SINE Alu -4 116 1 6 1167 211 146 0 89 chr11 76309789 76309834 -45534022 - B3 SINE B2 -175 41 1 6 1167 337 167 30 0 chr11 76309834 76309900 -45533956 - B1_Mur2 SINE Alu -40 109 42 6 1167 2444 86 6 12 chr11 76310281 76310610 -45533246 - ORR1A2 LTR MaLR 0 327 1 6 1167 414 125 0 0 chr11 76312338 76312418 -45531438 + (T)n Simple_repeat Simple_repeat 1 80 0 6 1167 225 163 0 0 chr11 76312488 76312537 -45531319 + T-rich Low_complexity Low_complexity 1 49 0 6 1167 1241 61 0 0 chr11 76312537 76312684 -45531172 - B1_Mus2 SINE Alu 0 147 1 7 1167 445 68 27 0 chr11 76312874 76312948 -45530908 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1167 252 0 0 0 chr11 76312969 76312997 -45530859 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1167 273 315 89 9 chr11 76313036 76313148 -45530708 - MIRm SINE MIR -2 274 154 7 1167 218 369 80 40 chr11 76313148 76313211 -45530645 - L2b LINE L2 -4 3371 3190 7 1167 327 298 56 21 chr11 76313237 76313381 -45530475 + L1M5 LINE L1 5556 5704 -420 7 1167 268 280 71 27 chr11 76313460 76313552 -45530304 + B1_Mus2 SINE Alu 8 102 -46 7 1167 387 0 0 0 chr11 76313552 76313595 -45530261 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1167 268 272 75 21 chr11 76313595 76313619 -45530237 + B1_Mus2 SINE Alu 102 125 -22 7 1167 281 254 14 40 chr11 76313634 76313708 -45530148 + ID4_ SINE ID 5 76 -7 7 1167 211 380 0 21 chr11 76314152 76314246 -45529610 - L2b LINE L2 -167 3208 3117 7 1167 307 371 0 9 chr11 76314254 76314360 -45529496 + PB1D10 SINE Alu 5 109 -8 7 1167 184 269 71 56 chr11 76314763 76314889 -45528967 + L2b LINE L2 2966 3093 -282 7 1167 337 236 125 54 chr11 76315063 76315175 -45528681 + PB1D7 SINE Alu 1 120 0 7 1167 22 0 0 0 chr11 76315233 76315255 -45528601 + AT_rich Low_complexity Low_complexity 1 22 0 7 1167 820 247 23 0 chr11 76315273 76315447 -45528409 + B3 SINE B2 7 184 -32 7 1167 429 129 0 0 chr11 76315461 76315531 -45528325 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1167 208 200 12 85 chr11 76315592 76315674 -45528182 + T-rich Low_complexity Low_complexity 5 80 0 7 1167 287 182 0 35 chr11 76315696 76315753 -45528103 - B2_Mm2 SINE B2 -94 101 47 7 1167 1293 98 35 0 chr11 76315801 76315974 -45527882 - B2_Mm1t SINE B2 -14 179 1 7 1167 308 241 76 0 chr11 76315975 76316054 -45527802 + MIR SINE MIR 64 148 -114 7 1167 261 308 38 25 chr11 76316456 76316536 -45527320 + ID4_ SINE ID 1 81 -2 7 1167 250 188 21 0 chr11 76316624 76316672 -45527184 - L3 LINE CR1 -103 4386 4338 7 1167 630 201 82 0 chr11 76317088 76317222 -45526634 - B1F SINE Alu 0 149 5 7 1167 304 350 123 25 chr11 76318172 76318335 -45525521 + MIRb SINE MIR 47 219 -49 7 1167 266 328 58 53 chr11 76318460 76318666 -45525190 - MIRc SINE MIR -30 238 32 7 1167 431 191 51 68 chr11 76319107 76319225 -45524631 - PB1D9 SINE Alu 0 120 5 7 1167 897 251 131 43 chr11 76319406 76319613 -45524243 + MLT2B4 LTR ERVL 3 214 -342 7 1167 331 294 88 0 chr11 76319613 76319749 -45524107 + B1F SINE Alu 1 148 -1 7 1167 897 251 131 43 chr11 76319749 76319915 -45523941 + MLT2B4 LTR ERVL 215 408 -148 7 1167 315 0 0 0 chr11 76319964 76319999 -45523857 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1167 505 189 6 6 chr11 76320254 76320419 -45523437 + (CA)n Simple_repeat Simple_repeat 1 165 0 7 1167 23 0 0 0 chr11 76322642 76322665 -45521191 + GC_rich Low_complexity Low_complexity 1 23 0 7 1167 317 306 238 30 chr11 76324888 76325258 -45518598 + L1ME2z LINE L1 5991 6437 -7 7 1167 459 125 0 0 chr11 76325288 76325360 -45518496 + (TC)n Simple_repeat Simple_repeat 1 72 0 7 1167 320 291 121 115 chr11 76325712 76326069 -45517787 + MLT1D LTR MaLR 5 371 -19 7 1167 234 0 0 0 chr11 76326075 76326101 -45517755 + (CACCC)n Simple_repeat Simple_repeat 3 28 0 7 1167 411 327 58 39 chr11 76326232 76326439 -45517417 + L1M5 LINE L1 5270 5480 -644 7 1167 257 262 0 0 chr11 76326441 76326502 -45517354 + ID4 SINE ID 20 80 -3 7 1167 1272 143 42 0 chr11 76326719 76326908 -45516948 + B3 SINE B2 3 199 -17 7 1167 888 199 7 0 chr11 76326910 76327056 -45516800 + B1_Mur2 SINE Alu 2 148 -1 7 1167 470 185 109 0 chr11 76327281 76327373 -45516483 + PB1D10 SINE Alu 1 102 -15 7 1167 24 0 0 0 chr11 76328110 76328134 -45515722 + AT_rich Low_complexity Low_complexity 1 24 0 7 1167 213 197 194 16 chr11 76328673 76328735 -45515121 + MIRb SINE MIR 196 268 0 7 1167 312 355 41 23 chr11 76328734 76328953 -45514903 - L2c LINE L2 -252 3135 2913 7 1167 280 220 17 0 chr11 76329859 76329918 -45513938 + L1ME3 LINE L1 6000 6059 -103 7 1167 1462 97 0 5 chr11 76329995 76330191 -45513665 + B2_Mm2 SINE B2 1 195 0 7 1167 885 185 0 0 chr11 76330191 76330364 -45513492 + GA-rich Low_complexity Low_complexity 1 173 0 7 1167 595 306 0 0 chr11 76330406 76330553 -45513303 - B1F1 SINE Alu -1 148 2 7 1167 278 247 91 20 chr11 76330575 76330674 -45513182 + PB1D10 SINE Alu 3 108 -9 7 1167 838 215 0 0 chr11 76330689 76330838 -45513018 + B1_Mur4 SINE Alu 2 150 0 7 1167 329 160 63 16 chr11 76330858 76330985 -45512871 + (TA)n Simple_repeat Simple_repeat 2 134 0 7 1167 214 293 231 8 chr11 76332234 76332368 -45511488 + L2a LINE L2 2292 2455 -964 7 1167 201 303 264 0 chr11 76332424 76332579 -45511277 + L2a LINE L2 2583 2778 -641 7 1167 569 14 14 0 chr11 76332581 76332651 -45511205 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1167 534 177 17 50 chr11 76332759 76332878 -45510978 - PB1D7 SINE Alu 0 120 6 7 1167 618 139 28 9 chr11 76333157 76333266 -45510590 - PB1D9 SINE Alu -8 112 2 7 1167 211 297 152 11 chr11 76333266 76333358 -45510498 + L2a LINE L2 3322 3426 0 7 1167 437 309 17 46 chr11 76334878 76335051 -45508805 + MIR SINE MIR 6 173 -89 7 1167 494 290 96 13 chr11 76335065 76335222 -45508634 - ID_B1 SINE B4 -2 222 53 7 1167 1170 182 5 5 chr11 76335246 76335450 -45508406 - B3 SINE B2 -7 209 6 7 1167 550 0 29 0 chr11 76335485 76335555 -45508301 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1167 585 268 7 7 chr11 76335575 76335714 -45508142 - ID_B1 SINE B4 -2 222 84 7 1167 247 296 26 78 chr11 76335583 76335737 -45508119 + YREP_Mm Unknown Unknown 187 332 -1480 7 1167 2285 117 47 79 chr11 76335873 76336317 -45507539 + RLTR23 LTR ERV1 1 430 0 7 1167 230 295 64 64 chr11 76337420 76337561 -45506295 - MIRc SINE MIR -109 159 19 7 1167 816 209 33 78 chr11 76337649 76337893 -45505963 - B4A SINE B4 -50 242 10 7 1167 488 279 0 0 chr11 76337907 76338018 -45505838 - PB1D10 SINE Alu -5 112 2 7 1167 270 0 0 0 chr11 76338069 76338150 -45505706 + L1Md_T LINE L1 6542 6582 0 7 1167 360 284 0 0 chr11 76339472 76339553 -45504303 + ID4_ SINE ID 1 81 -2 7 1167 180 0 0 0 chr11 76339555 76339575 -45504281 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1167 189 188 230 23 chr11 76339891 76339978 -45503878 + MIRb SINE MIR 132 236 -32 7 1167 247 339 35 18 chr11 76340067 76340181 -45503675 + MLT1J2 LTR MaLR 24 139 -309 7 1167 351 213 106 0 chr11 76340595 76340689 -45503167 - B1F SINE Alu -1 148 45 7 1167 666 291 81 7 chr11 76340805 76341223 -45502633 + L1MB3 LINE L1 5697 6158 -20 7 1167 469 225 54 9 chr11 76341246 76341358 -45502498 - PB1D9 SINE Alu 0 120 4 7 1167 734 256 30 10 chr11 76341437 76341634 -45502222 + B3 SINE B2 16 216 0 7 1167 198 118 0 0 chr11 76341973 76342007 -45501849 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1167 1368 29 0 11 chr11 76342008 76342183 -45501673 - B2_Mm2 SINE B2 -22 173 1 7 1167 283 299 154 23 chr11 76342718 76342856 -45501000 + MIR SINE MIR 74 239 -29 7 1167 701 211 39 17 chr11 76343429 76343607 -45500249 + MIR SINE MIR 20 201 -61 7 1167 242 316 0 0 chr11 76345129 76345205 -45498651 + ID4 SINE ID 2 77 -6 7 1167 269 26 26 0 chr11 76345205 76345243 -45498613 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1167 213 341 90 69 chr11 76346081 76346226 -45497630 - ID_B1 SINE B4 -48 176 29 7 1167 431 281 0 0 chr11 76346234 76346348 -45497508 + L1M4 LINE L1 4848 4961 -1185 7 1167 355 343 54 27 chr11 76346365 76346512 -45497344 + RSINE1 SINE B4 12 162 -3 7 1167 198 0 0 0 chr11 76346514 76346536 -45497320 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1167 23 0 0 0 chr11 76346538 76346561 -45497295 + AT_rich Low_complexity Low_complexity 1 23 0 7 1167 604 261 35 14 chr11 76346613 76346757 -45497099 + B1_Mur1 SINE Alu 3 149 0 7 1167 350 287 83 0 chr11 76346772 76346880 -45496976 + PB1D10 SINE Alu 1 117 0 7 1167 678 149 0 0 chr11 76346909 76347016 -45496840 + B1_Mur3 SINE Alu 36 142 -7 7 1167 910 179 60 78 chr11 76347052 76347270 -45496586 + B3 SINE B2 3 216 0 7 1167 334 262 0 0 chr11 76347270 76347350 -45496506 + L1M4 LINE L1 5019 5098 -1048 7 1167 1501 37 10 16 chr11 76347360 76347553 -45496303 + B2_Mm1a SINE B2 2 193 0 7 1167 1121 219 30 60 chr11 76347574 76347949 -45495907 + ORR1D1 LTR MaLR 1 339 -45 7 1167 639 217 122 22 chr11 76347969 76348191 -45495665 + L1M4 LINE L1 5114 5357 -789 7 1167 181 312 102 20 chr11 76348205 76348303 -45495553 - MIRm SINE MIR -1 275 170 7 1167 1160 234 39 18 chr11 76348343 76348622 -45495234 - MTD LTR MaLR -132 287 3 7 1167 257 319 121 0 chr11 76348626 76348742 -45495114 - MIR SINE MIR -121 141 12 7 1167 1260 208 183 98 chr11 76348755 76349175 -45494681 + MT2A LTR ERVL 5 460 -73 7 1167 402 21 0 0 chr11 76349181 76349228 -45494628 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1167 351 0 0 0 chr11 76349228 76349266 -45494590 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1167 207 0 0 0 chr11 76349271 76349294 -45494562 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1167 1092 57 0 14 chr11 76349299 76349442 -45494414 - B1_Mus1 SINE Alu -7 141 1 7 1167 541 280 14 27 chr11 76349745 76349892 -45493964 - ID_B1 SINE B4 0 224 80 7 1167 209 387 48 0 chr11 76350548 76350672 -45493184 - MIR SINE MIR -118 144 15 7 1167 304 296 68 0 chr11 76350777 76350865 -45492991 - MIR SINE MIR -128 134 41 7 1167 387 0 0 0 chr11 76350944 76350987 -45492869 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1167 250 252 79 0 chr11 76351235 76351321 -45492535 + MER112 DNA MER1_type 1 99 -162 7 1167 342 232 0 79 chr11 76351321 76351410 -45492446 - ID4 SINE ID 0 83 2 8 1167 371 250 94 16 chr11 76351552 76351743 -45492113 + L1ME3B LINE L1 5768 5973 -267 8 1167 783 165 0 0 chr11 76351743 76351876 -45491980 + B1_Mur1 SINE Alu 1 133 -16 8 1167 192 40 0 0 chr11 76351879 76351904 -45491952 + (TATG)n Simple_repeat Simple_repeat 4 28 0 8 1167 740 266 45 99 chr11 76352069 76352444 -45491412 + MLT1B LTR MaLR 36 390 0 8 1167 1065 50 0 0 chr11 76352513 76352652 -45491204 - B1_Mus1 SINE Alu 0 148 10 8 1167 236 218 0 52 chr11 76352796 76352854 -45491002 - MIR SINE MIR -112 96 42 8 1167 323 202 21 65 chr11 76352854 76352955 -45490901 + PB1D9 SINE Alu 3 117 0 8 1167 436 284 10 0 chr11 76353329 76353431 -45490425 + PB1D10 SINE Alu 6 108 -9 8 1167 1502 33 16 0 chr11 76353431 76353615 -45490241 - B2_Mm1t SINE B2 -4 189 3 8 1167 1114 14 0 0 chr11 76353631 76353769 -45490087 - B1_Mus1 SINE Alu 0 148 11 8 1167 309 51 0 0 chr11 76354228 76354267 -45489589 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 8 1167 266 218 0 18 chr11 76355077 76355133 -45488723 + B1_Mur4 SINE Alu 14 68 -82 8 1167 195 129 0 0 chr11 76355133 76355164 -45488692 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 1167 332 189 17 35 chr11 76355182 76355297 -45488559 + GA-rich Low_complexity Low_complexity 5 117 0 8 1167 845 144 13 27 chr11 76356196 76356210 -45487646 - B1_Mur3 SINE Alu -1 148 138 8 1167 198 0 0 0 chr11 76356210 76356232 -45487624 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 8 1167 845 144 13 27 chr11 76356232 76356367 -45487489 - B1_Mur3 SINE Alu -12 137 1 8 1167 1318 75 0 36 chr11 76356375 76356406 -45487450 - B2_Mm2 SINE B2 -5 190 162 8 1167 255 61 0 0 chr11 76356406 76356439 -45487417 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1167 1318 75 0 36 chr11 76356439 76356602 -45487254 - B2_Mm2 SINE B2 -34 161 3 8 1167 307 283 20 10 chr11 76356963 76357063 -45486793 + LTR86B1 LTR ERVL 330 430 -63 8 1167 229 221 103 0 chr11 76357128 76357196 -45486660 + ID4 SINE ID 2 76 -7 8 1167 305 198 0 173 chr11 76357530 76357559 -45486297 - MER53 DNA hAT -1 192 171 8 1167 699 167 39 8 chr11 76357559 76357686 -45486170 + B1_Mur1 SINE Alu 5 135 -14 8 1167 339 25 0 0 chr11 76357689 76357729 -45486127 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 8 1167 305 198 0 173 chr11 76357729 76357799 -45486057 - MER53 DNA hAT -23 170 107 8 1167 341 248 52 26 chr11 76357733 76357838 -45486018 + MER53 DNA hAT 34 141 -52 8 1167 1209 228 143 6 chr11 76357838 76358187 -45485669 - MTD LTR MaLR 0 419 23 8 1167 260 207 235 35 chr11 76358317 76358402 -45485454 - PB1 SINE Alu -4 123 22 8 1167 282 280 0 0 chr11 76358422 76358497 -45485359 - ID4 SINE ID -6 77 3 8 1167 426 220 7 132 chr11 76360288 76360424 -45483432 - RSINE1 SINE B4 -6 159 41 8 1167 245 351 0 0 chr11 76360747 76360824 -45483032 - MER2 DNA MER2_type -15 330 254 8 1167 256 270 13 51 chr11 76360828 76360906 -45482950 + ID4 SINE ID 7 81 -2 8 1167 302 282 26 11 chr11 76360977 76361085 -45482771 - MER2 DNA MER2_type -228 117 6 8 1167 308 294 87 0 chr11 76361113 76361239 -45482617 + MER34A1 LTR ERV1 429 565 -22 8 1167 430 215 93 62 chr11 76361920 76362049 -45481807 - MER2 DNA MER2_type -206 139 7 8 1167 6360 18 1 3 chr11 76362309 76363052 -45480804 + RLTR4_Mm LTR ERV1 1 742 0 8 1167 65443 15 6 0 chr11 76363052 76370611 -45473245 + RLTR4_MM-int LTR ERV1 1 7601 0 8 1167 6360 18 1 3 chr11 76370611 76371354 -45472502 + RLTR4_Mm LTR ERV1 1 742 0 8 1167 1697 189 103 48 chr11 76371984 76372461 -45471395 + RLTR16 LTR ERVK 1 503 -2 8 1167 833 267 18 5 chr11 76372537 76372755 -45471101 + B4A SINE B4 1 221 -71 8 1167 439 174 2 24 chr11 76372755 76372838 -45471018 + B1_Mur3 SINE Alu 16 97 -52 8 1167 392 59 0 14 chr11 76373094 76373163 -45470693 + L1Md_F2 LINE L1 6515 6582 0 8 1167 351 0 0 0 chr11 76373195 76373234 -45470622 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1167 472 221 186 0 chr11 76373254 76373367 -45470489 - B1F1 SINE Alu -8 141 8 8 1167 1099 114 24 12 chr11 76373393 76373591 -45470265 + URR1B DNA MER1_type 3 225 0 8 1167 337 269 106 7 chr11 76373674 76373816 -45470040 + MER5A1 DNA MER1_type 7 162 -4 8 1167 418 341 63 14 chr11 76373980 76374203 -45469653 + MER113 DNA MER1_type 130 363 -158 8 1167 234 0 0 0 chr11 76374524 76374550 -45469306 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1167 400 275 48 151 chr11 76374649 76374940 -45468916 + B4 SINE B4 2 262 -30 8 1167 246 62 0 0 chr11 76376415 76376447 -45467409 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 8 1167 306 274 0 27 chr11 76376618 76376693 -45467163 + ID_B1 SINE B4 91 163 -61 8 1167 384 291 27 85 chr11 76376657 76376734 -45467122 + MT2B LTR ERVL 88 153 -448 8 1167 725 155 26 60 chr11 76376734 76376885 -45466971 + B1_Mus1 SINE Alu 1 146 -2 8 1167 293 239 70 0 chr11 76376896 76376967 -45466889 + ID2 SINE ID 1 76 -7 8 1167 242 300 110 26 chr11 76377343 76377497 -45466359 + MIRb SINE MIR 91 257 -11 8 1167 327 206 62 42 chr11 76377509 76377605 -45466251 - B1F SINE Alu -1 148 51 8 1167 423 237 271 6 chr11 76377609 76377779 -45466077 - ID_B1 SINE B4 -9 215 1 8 1167 476 298 6 30 chr11 76377808 76377974 -45465882 + RSINE1 SINE B4 4 165 0 8 1167 269 183 155 0 chr11 76379417 76379488 -45464368 + PB1D10 SINE Alu 21 102 -15 8 1167 206 361 39 78 chr11 76382021 76382201 -45461655 + MIRm SINE MIR 68 240 -36 8 1167 28 29 0 0 chr11 76384893 76384928 -45458928 + GC_rich Low_complexity Low_complexity 1 35 0 8 1167 285 171 143 0 chr11 76386990 76387060 -45456796 - ID4_ SINE ID -2 81 2 8 1167 679 271 38 64 chr11 76387081 76387386 -45456470 + ORR1D1 LTR MaLR 1 276 -91 8 1167 2418 152 142 12 chr11 76387476 76387982 -45455874 + RMER15 LTR ERVL 4 575 0 8 1167 1006 195 11 6 chr11 76389160 76389335 -45454521 + B3 SINE B2 39 214 -2 8 1167 465 328 50 0 chr11 76389363 76389543 -45454313 - MIR SINE MIR 0 262 74 8 1167 622 127 250 17 chr11 76390029 76390149 -45453707 - B1_Mur1 SINE Alu 0 149 2 8 1167 518 250 52 91 chr11 76390264 76390418 -45453438 + RSINE1 SINE B4 3 150 -15 8 1167 373 205 50 25 chr11 76391820 76391832 -45452024 - B3 SINE B2 -134 82 72 8 1167 188 67 33 0 chr11 76391832 76391862 -45451994 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1167 373 205 50 25 chr11 76391862 76391929 -45451927 - B3 SINE B2 -145 71 1 8 1167 265 0 24 48 chr11 76391950 76391992 -45451864 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 8 1167 722 150 9 0 chr11 76391993 76392106 -45451750 - B1_Mur4 SINE Alu -1 149 36 8 1167 602 133 0 54 chr11 76392319 76392430 -45451426 - B1_Mur4 SINE Alu 0 150 46 8 1167 326 293 0 24 chr11 76392703 76392787 -45451069 - ID4 SINE ID -1 82 1 8 1167 381 43 0 0 chr11 76392851 76392898 -45450958 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1167 1419 77 0 30 chr11 76392934 76393135 -45450721 - B2_Mm2 SINE B2 0 195 1 8 1167 2339 85 6 0 chr11 76393173 76393491 -45450365 - ORR1A2 LTR MaLR -7 320 1 8 1167 775 185 131 68 chr11 76393522 76393555 -45450301 + B3 SINE B2 9 41 -175 8 1167 1380 84 0 26 chr11 76393555 76393750 -45450106 + B2_Mm1a SINE B2 2 191 -2 8 1167 775 187 114 80 chr11 76393750 76393933 -45449923 + B3 SINE B2 37 211 -5 8 1167 326 324 26 26 chr11 76393948 76394062 -45449794 + PB1D10 SINE Alu 3 116 -1 8 1167 228 371 56 8 chr11 76394070 76394195 -45449661 + L2b LINE L2 3072 3202 -173 8 1167 1219 176 15 0 chr11 76394225 76394430 -45449426 + B3 SINE B2 5 212 -4 8 1167 185 306 0 0 chr11 76394976 76395025 -45448831 + MIR SINE MIR 20 68 -194 8 1167 275 278 26 77 chr11 76395513 76395591 -45448265 - ID4_ SINE ID -9 74 1 8 1167 340 211 0 18 chr11 76395772 76395843 -45448013 - B3A SINE B2 -147 69 1 8 1167 440 258 10 0 chr11 76395843 76395937 -45447919 + B3A SINE B2 57 151 -47 8 1167 306 0 0 0 chr11 76395937 76395971 -45447885 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1167 891 94 0 0 chr11 76395971 76396119 -45447737 + (GA)n Simple_repeat Simple_repeat 2 150 0 8 1167 211 225 0 24 chr11 76396205 76396246 -45447610 - ID4_ SINE ID 0 83 44 8 1167 317 233 53 30 chr11 76396371 76396485 -45447371 + MLT1A1 LTR MaLR 223 389 -19 8 1167 1126 192 39 0 chr11 76396786 76396989 -45446867 + B3 SINE B2 4 214 -2 8 1167 2106 169 93 0 chr11 76397166 76397544 -45446312 - MTC LTR MaLR -8 413 1 8 1167 273 324 26 77 chr11 76397544 76397661 -45446195 - L2b LINE L2 -229 3146 3036 8 1167 467 248 42 8 chr11 76397679 76397797 -45446059 + PB1 SINE Alu 4 125 -2 8 1167 1073 95 0 26 chr11 76397819 76397971 -45445885 + B1_Mus1 SINE Alu 1 148 0 8 1167 868 275 11 0 chr11 76397980 76398062 -45445794 + ID SINE ID 3 86 -138 8 1167 393 302 59 0 chr11 76398062 76398181 -45445675 + B1F2 SINE Alu 4 129 -20 8 1167 1312 199 148 7 chr11 76398282 76398586 -45445270 + ORR1D1 LTR MaLR 1 347 -27 8 1167 7895 47 0 2 chr11 76398591 76399666 -45444190 - L1Md_F2 LINE L1 -12 6570 5498 8 1167 234 313 80 94 chr11 76400184 76400222 -45443634 - B3A SINE B2 0 198 1 8 1167 538 296 31 25 chr11 76400222 76400385 -45443471 - RSINE1 SINE B4 0 165 2 8 1167 180 125 0 0 chr11 76401621 76401653 -45442203 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1167 1174 86 103 0 chr11 76401964 76402139 -45441717 + B2_Mm2 SINE B2 1 193 -2 8 1167 242 239 209 0 chr11 76402403 76402470 -45441386 - ID2 SINE ID -2 81 1 8 1167 504 309 19 19 chr11 76402494 76402649 -45441207 - RSINE1 SINE B4 0 165 11 9 1167 415 270 30 10 chr11 76403699 76403800 -45440056 - PB1D10 SINE Alu 0 117 15 9 1167 351 0 0 0 chr11 76403800 76403839 -45440017 + (TTATA)n Simple_repeat Simple_repeat 2 40 0 9 1167 787 232 0 0 chr11 76403839 76403977 -45439879 - B1_Mur1 SINE Alu -7 142 5 9 1167 229 304 0 0 chr11 76404238 76404294 -45439562 + B3A SINE B2 131 186 -12 9 1167 680 270 56 22 chr11 76404375 76404553 -45439303 + B3A SINE B2 1 184 -14 9 1167 1206 153 42 0 chr11 76404697 76404912 -45438944 + URR1B DNA MER1_type 1 224 -1 9 1167 631 252 33 20 chr11 76405210 76405360 -45438496 + ID_B1 SINE B4 1 152 -72 9 1167 437 262 75 3 chr11 76405365 76405522 -45438334 + B3 SINE B2 1 184 -9 9 1167 956 160 0 0 chr11 76405529 76405679 -45438177 + B1_Mur4 SINE Alu 1 150 0 9 1167 1064 215 10 0 chr11 76405734 76405943 -45437913 + B3 SINE B2 1 211 -5 9 1167 726 158 104 8 chr11 76406167 76406178 -45437678 - B1_Mus2 SINE Alu 0 147 137 9 1167 441 0 0 0 chr11 76406178 76406227 -45437629 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 9 1167 726 158 104 8 chr11 76406227 76406349 -45437507 - B1_Mus2 SINE Alu -11 136 1 9 1167 379 310 11 90 chr11 76406392 76406564 -45437292 + ID_B1 SINE B4 67 217 -7 9 1167 435 171 11 99 chr11 76406595 76406686 -45437170 + ID4_ SINE ID 1 83 0 9 1167 405 247 176 91 chr11 76407962 76408149 -45435707 + B4 SINE B4 1 203 -89 9 1167 236 283 86 66 chr11 76408302 76408333 -45435523 - YREP_Mm Unknown Unknown -1470 342 233 9 1167 615 241 35 14 chr11 76408333 76408476 -45435380 + B1F SINE Alu 3 148 -1 9 1167 236 283 86 66 chr11 76408476 76408499 -45435357 - YREP_Mm Unknown Unknown -1470 232 142 9 1167 917 99 23 0 chr11 76408778 76408909 -45434947 + B1_Mus1 SINE Alu 15 148 0 9 1167 793 242 9 100 chr11 76408919 76409116 -45434740 - B3 SINE B2 -7 209 28 9 1167 564 191 167 0 chr11 76409116 76409242 -45434614 - B1_Mus1 SINE Alu 0 148 2 9 1167 793 242 9 100 chr11 76409242 76409274 -45434582 - B3 SINE B2 -189 27 1 9 1167 675 261 72 6 chr11 76409327 76409493 -45434363 - B3A SINE B2 -21 177 1 9 1167 429 288 45 15 chr11 76409580 76409714 -45434142 - B4A SINE B4 -146 146 9 9 1167 426 236 99 68 chr11 76409773 76409964 -45433892 - B3A SINE B2 -1 197 1 9 1167 305 298 29 113 chr11 76409964 76410168 -45433688 + L1MC LINE L1 3806 3992 -2154 9 1167 308 317 0 0 chr11 76410388 76410470 -45433386 + ID4 SINE ID 2 83 0 9 1167 466 188 248 0 chr11 76410553 76410654 -45433202 - B1_Mur2 SINE Alu -5 144 19 9 1167 1013 198 43 29 chr11 76410657 76410865 -45432991 - B3 SINE B2 -5 211 1 9 1167 1152 131 23 0 chr11 76411210 76411385 -45432471 + B2_Mm1t SINE B2 1 179 -14 9 1167 334 145 0 40 chr11 76411432 76411499 -45432357 + B2_Mm2 SINE B2 47 109 -107 9 1167 221 324 148 0 chr11 76413407 76413515 -45430341 + PB1 SINE Alu 1 124 -3 9 1167 259 259 111 0 chr11 76413538 76413619 -45430237 + RSINE1 SINE B4 47 136 -29 9 1167 31 0 0 0 chr11 76413628 76413659 -45430197 + AT_rich Low_complexity Low_complexity 1 31 0 9 1167 396 0 0 0 chr11 76413659 76413703 -45430153 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1167 673 113 0 70 chr11 76413870 76414041 -45429815 + A-rich Low_complexity Low_complexity 2 160 0 9 1167 227 54 27 0 chr11 76414257 76414294 -45429562 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 9 1167 586 192 72 40 chr11 76414298 76414423 -45429433 - B1_Mur1 SINE Alu -2 147 19 9 1167 189 118 39 19 chr11 76414646 76414698 -45429158 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 9 1168 180 0 0 0 chr11 76415160 76415180 -45428676 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1168 234 159 63 29 chr11 76415180 76415249 -45428607 - PB1D7 SINE Alu -13 136 61 9 1168 398 184 51 26 chr11 76415234 76415312 -45428544 + B3 SINE B2 134 213 -3 9 1168 326 237 0 0 chr11 76415321 76415380 -45428476 - PB1D7 SINE Alu -53 67 9 9 1168 470 250 92 0 chr11 76415461 76415581 -45428275 - RSINE1 SINE B4 -34 131 1 9 1168 745 271 21 63 chr11 76415740 76416024 -45427832 - B4A SINE B4 -20 272 1 9 1168 196 325 39 0 chr11 76416175 76416252 -45427604 - MIRb SINE MIR -26 242 163 9 1168 266 325 70 19 chr11 76416326 76416397 -45427459 + ID SINE ID 1 79 -145 9 1168 289 306 22 16 chr11 76416397 76416526 -45427330 + PB1D7 SINE Alu 1 128 -21 9 1168 37 0 0 0 chr11 76416699 76416736 -45427120 + AT_rich Low_complexity Low_complexity 1 37 0 9 1168 1267 34 0 7 chr11 76416871 76417019 -45426837 + B1_Mus1 SINE Alu 2 148 0 9 1168 484 212 138 26 chr11 76417533 76417649 -45426207 + ID_B1 SINE B4 87 215 -9 9 1168 300 330 0 20 chr11 76417709 76417808 -45426048 + CT-rich Low_complexity Low_complexity 1 97 0 9 1168 312 257 0 114 chr11 76417971 76418050 -45425806 + ID SINE ID 2 71 -153 9 1168 23 0 0 0 chr11 76418139 76418162 -45425694 + AT_rich Low_complexity Low_complexity 1 23 0 9 1168 230 264 112 22 chr11 76418170 76418259 -45425597 + PB1D10 SINE Alu 21 117 0 9 1168 1640 239 45 5 chr11 76418520 76418923 -45424933 + MTD LTR MaLR 1 419 0 9 1168 275 332 109 39 chr11 76419220 76419433 -45424423 - MIRc SINE MIR -14 254 22 9 1168 546 372 35 51 chr11 76420429 76420684 -45423172 - MIR SINE MIR -5 257 7 9 1168 297 0 0 0 chr11 76420774 76420807 -45423049 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1168 426 39 0 0 chr11 76420807 76420858 -45422998 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1168 618 284 86 113 chr11 76421082 76421304 -45422552 - ORR1E LTR MaLR -178 216 1 9 1168 845 231 6 0 chr11 76421459 76421615 -45422241 + ID_B1 SINE B4 3 159 -65 9 1168 294 299 0 38 chr11 76421544 76421608 -45422248 + PB1D10 SINE Alu 8 68 -49 9 1168 263 217 58 0 chr11 76421608 76421677 -45422179 + PB1D10 SINE Alu 1 73 -44 9 1168 262 291 47 0 chr11 76421677 76421692 -45422164 + ID_B1 SINE B4 82 169 -55 9 1168 653 219 0 0 chr11 76421942 76422061 -45421795 + B1_Mur2 SINE Alu 31 149 0 9 1168 791 195 12 1 chr11 76422385 76422535 -45421321 + B3 SINE B2 2 156 -42 9 1168 417 165 42 42 chr11 76422505 76422600 -45421256 - ORR1D1 LTR MaLR -279 95 1 9 1168 911 180 80 30 chr11 76422634 76422834 -45421022 + B3 SINE B2 1 210 -6 9 1168 403 255 18 70 chr11 76422872 76422986 -45420870 + PB1D10 SINE Alu 1 108 -9 9 1168 249 275 20 81 chr11 76423257 76423356 -45420500 + MLT1J LTR MaLR 109 201 -311 9 1168 241 313 130 10 chr11 76423375 76423475 -45420381 - PB1D7 SINE Alu -8 112 1 9 1168 519 315 61 63 chr11 76423723 76423980 -45419876 - MLT1D LTR MaLR -49 578 235 9 1168 414 0 0 0 chr11 76423981 76424027 -45419829 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1168 271 255 194 0 chr11 76424027 76424125 -45419731 - MLT1D LTR MaLR -386 119 3 9 1168 863 228 29 13 chr11 76424174 76424358 -45419498 - B3 SINE B2 -4 194 14 9 1168 196 283 33 16 chr11 76424857 76424918 -45418938 - L2b LINE L2 -13 3413 3352 9 1168 671 250 6 84 chr11 76425146 76425312 -45418544 - B3A SINE B2 0 198 46 9 1168 285 220 24 142 chr11 76425406 76425533 -45418323 - PB1D10 SINE Alu -1 116 5 9 1168 729 87 19 0 chr11 76425572 76425676 -45418180 - B1_Mus2 SINE Alu -1 146 41 9 1168 213 317 0 68 chr11 76426078 76426166 -45417690 - ID4_ SINE ID 0 83 2 9 1168 326 275 75 21 chr11 76426173 76426266 -45417590 - PB1D10 SINE Alu -5 112 15 9 1168 198 286 42 14 chr11 76426865 76426936 -45416920 - L2b LINE L2 -39 3336 3264 9 1168 629 293 165 57 chr11 76427124 76427457 -45416399 + MLT1J LTR MaLR 2 370 -142 9 1168 322 267 2 0 chr11 76427890 76427969 -45415887 + ID4_ SINE ID 7 86 -66 9 1168 300 323 27 65 chr11 76428059 76428220 -45415636 - MIRb SINE MIR -13 255 94 9 1168 843 247 6 0 chr11 76428414 76428576 -45415280 + B3 SINE B2 2 164 -52 9 1168 474 18 0 0 chr11 76428580 76428635 -45415221 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1168 289 244 67 17 chr11 76428672 76428791 -45415065 - B3 SINE B2 -11 184 62 9 1168 1218 107 153 0 chr11 76428791 76428987 -45414869 - URR1A DNA MER1_type 0 226 1 9 1168 268 265 129 30 chr11 76428987 76429020 -45414836 - B3A SINE B2 -137 61 22 9 1168 384 305 25 2 chr11 76429219 76429342 -45414514 - PB1D10 SINE Alu -20 129 2 9 1168 369 0 0 0 chr11 76429494 76429535 -45414321 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1168 351 0 0 0 chr11 76429535 76429573 -45414283 + (GA)n Simple_repeat Simple_repeat 1 39 0 9 1168 798 163 19 58 chr11 76429711 76429867 -45413989 + B1_Mur4 SINE Alu 1 150 0 9 1168 249 185 0 0 chr11 76429868 76429933 -45413923 + (CAAGA)n Simple_repeat Simple_repeat 1 65 0 9 1168 332 269 31 130 chr11 76430371 76430533 -45413323 - RSINE1 SINE B4 -17 148 3 9 1168 391 139 0 34 chr11 76430798 76430887 -45412969 + GA-rich Low_complexity Low_complexity 2 87 0 9 1168 319 191 13 105 chr11 76430928 76431004 -45412852 + ID4_ SINE ID 1 69 -14 9 1168 196 286 82 57 chr11 76431633 76431839 -45412017 + MIR SINE MIR 7 262 0 9 1168 186 344 100 0 chr11 76431858 76431948 -45411908 - MIRb SINE MIR -138 130 32 9 1168 1160 73 0 0 chr11 76432196 76432333 -45411523 - B1_Mus2 SINE Alu -10 137 1 9 1168 282 260 227 8 chr11 76432707 76432835 -45411021 - MIR SINE MIR -24 238 83 9 1168 418 267 38 9 chr11 76432870 76432976 -45410880 - PB1D10 SINE Alu -7 110 2 9 1168 293 265 0 14 chr11 76433101 76433170 -45410686 - tRNA-Ala-GCA tRNA tRNA -7 68 1 9 1168 737 226 7 14 chr11 76433199 76433347 -45410509 + B1_Mur1 SINE Alu 1 147 -2 9 1168 689 269 18 36 chr11 76433380 76433546 -45410310 + RSINE1 SINE B4 3 165 0 1 1168 260 307 23 0 chr11 76433835 76433923 -45409933 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1168 232 300 10 91 chr11 76434051 76434150 -45409706 - RLTR9B2 LTR ERVK -104 316 226 1 1168 264 287 92 9 chr11 76434866 76434975 -45408881 - L2c LINE L2 -2 3385 3268 1 1168 24 32 0 0 chr11 76436389 76436420 -45407436 + GC_rich Low_complexity Low_complexity 1 31 0 1 1168 21 57 0 0 chr11 76436952 76436987 -45406869 + GC_rich Low_complexity Low_complexity 1 35 0 1 1168 207 262 45 91 chr11 76437879 76437967 -45405889 - MIR3 SINE MIR -26 182 99 1 1168 306 143 0 0 chr11 76438146 76438209 -45405647 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1168 634 283 121 39 chr11 76438258 76438515 -45405341 - B4A SINE B4 -7 285 8 1 1168 222 331 68 23 chr11 76438520 76438653 -45405203 + L2 LINE L2 2811 2949 -470 1 1168 1191 56 14 0 chr11 76438674 76438818 -45405038 + B1_Mus1 SINE Alu 3 148 0 1 1168 315 0 0 0 chr11 76439221 76439256 -45404600 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1168 284 70 23 0 chr11 76439401 76439444 -45404412 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 1 1168 806 144 0 23 chr11 76439531 76439659 -45404197 - B1_Mus2 SINE Alu -5 142 18 1 1168 272 273 153 55 chr11 76440256 76440419 -45403437 - MIR SINE MIR -14 254 72 1 1168 253 309 53 11 chr11 76440672 76440767 -45403089 + LTR16E1 LTR ERVL 3 101 -437 1 1168 638 192 8 8 chr11 76440837 76440958 -45402898 - B1F2 SINE Alu 0 149 29 1 1168 372 317 40 40 chr11 76440838 76440989 -45402867 - ID_B1 SINE B4 0 224 74 1 1168 1433 168 34 171 chr11 76441203 76441373 -45402483 + ORR1C2 LTR MaLR 1 149 -235 1 1168 261 0 0 0 chr11 76441373 76441402 -45402454 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1168 354 45 0 0 chr11 76441402 76441445 -45402411 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1168 1433 168 34 171 chr11 76441445 76441718 -45402138 + ORR1C2 LTR MaLR 150 383 -1 1 1168 485 234 0 9 chr11 76442089 76442197 -45401659 - RSINE1 SINE B4 -57 108 2 1 1168 449 115 167 0 chr11 76442825 76442903 -45400953 + B1_Mus2 SINE Alu 57 147 0 1 1168 256 269 0 0 chr11 76443061 76443113 -45400743 - B1F1 SINE Alu -93 56 5 1 1168 207 0 0 0 chr11 76443124 76443147 -45400709 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1168 1142 59 0 0 chr11 76443157 76443292 -45400564 + B1_Mus2 SINE Alu 1 135 -12 1 1168 252 0 0 0 chr11 76443293 76443321 -45400535 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1168 208 154 39 0 chr11 76443354 76443406 -45400450 + CT-rich Low_complexity Low_complexity 3 56 0 1 1168 202 274 0 19 chr11 76443443 76443495 -45400361 + CT-rich Low_complexity Low_complexity 1 51 0 1 1168 465 249 22 167 chr11 76445135 76445204 -45398652 + B3A SINE B2 1 63 -135 1 1168 1564 47 10 0 chr11 76445204 76445396 -45398460 - B2_Mm2 SINE B2 -1 194 1 1 1168 465 249 22 167 chr11 76445396 76445553 -45398303 + B3A SINE B2 64 194 -4 1 1168 405 197 0 0 chr11 76445633 76445704 -45398152 + ID4 SINE ID 2 72 -11 1 1168 739 246 33 84 chr11 76445817 76446030 -45397826 + ID_B1 SINE B4 7 208 -16 1 1168 360 317 0 47 chr11 76446078 76446183 -45397673 + B1F2 SINE Alu 5 104 -45 1 1168 221 227 23 0 chr11 76446183 76446227 -45397629 + B3A SINE B2 3 47 -151 1 1168 295 196 0 0 chr11 76446225 76446276 -45397580 - B4 SINE B4 -117 175 125 1 1168 1211 87 29 6 chr11 76446333 76446507 -45397349 + B2_Mm1t SINE B2 2 179 -14 1 1168 306 0 0 0 chr11 76446507 76446541 -45397315 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1 1168 639 143 98 0 chr11 76446549 76446661 -45397195 + B1_Mus1 SINE Alu 9 131 -17 1 1168 291 54 0 0 chr11 76446662 76446699 -45397157 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1168 1267 92 42 8 chr11 76446702 76446907 -45396949 + RLTR11B LTR ERVK 1 296 -157 1 1168 2708 107 24 75 chr11 76446907 76447360 -45396496 + RLTR23 LTR ERV1 1 430 0 1 1168 1267 121 20 25 chr11 76447360 76447519 -45396337 + RLTR11B LTR ERVK 297 451 -2 1 1168 396 283 51 74 chr11 76447530 76447839 -45396017 - L1MC5 LINE L1 -1032 7010 6688 1 1168 1030 206 28 41 chr11 76448437 76448655 -45395201 + B3 SINE B2 2 216 0 1 1168 1569 31 5 25 chr11 76448661 76448857 -45394999 - B2_Mm1a SINE B2 0 193 2 1 1168 633 138 32 19 chr11 76448864 76449000 -45394856 - B1_Mur1 SINE Alu -1 148 12 1 1168 483 257 10 10 chr11 76449030 76449132 -45394724 + PB1D10 SINE Alu 11 112 -5 1 1168 21 36 0 0 chr11 76449146 76449174 -45394682 + AT_rich Low_complexity Low_complexity 1 28 0 1 1168 493 279 9 35 chr11 76449184 76449299 -45394557 + B1_Mur1 SINE Alu 7 118 -31 1 1168 349 152 34 0 chr11 76449291 76449350 -45394506 + B3A SINE B2 47 107 -91 1 1168 214 178 0 0 chr11 76449354 76449405 -45394451 + (CAGA)n Simple_repeat Simple_repeat 1 51 0 1 1168 756 186 49 21 chr11 76449431 76449574 -45394282 + B1_Mus2 SINE Alu 1 147 0 1 1168 278 341 42 28 chr11 76449784 76449926 -45393930 + MIR SINE MIR 21 164 -98 1 1168 1225 42 7 0 chr11 76449946 76450089 -45393767 - B1_Mus1 SINE Alu 0 148 5 1 1168 1022 135 0 13 chr11 76450141 76450291 -45393565 + B1_Mur2 SINE Alu 2 149 0 1 1168 452 212 342 6 chr11 76450456 76450508 -45393348 + ID_B1 SINE B4 5 110 -114 1 1168 263 254 100 133 chr11 76450508 76450623 -45393233 + B1_Mus2 SINE Alu 3 110 -37 1 1168 409 302 111 27 chr11 76450623 76450885 -45392971 + B4A SINE B4 1 284 -8 1 1168 263 254 100 133 chr11 76450885 76450919 -45392937 + B1_Mus2 SINE Alu 111 147 0 1 1168 211 182 0 0 chr11 76451003 76451036 -45392820 + polypyrimidine Low_complexity Low_complexity 1 33 0 1 1168 738 190 0 55 chr11 76451036 76451181 -45392675 - B1_Mur1 SINE Alu -5 144 8 1 1168 1032 107 50 6 chr11 76451501 76451661 -45392195 - B2_Mm2 SINE B2 -2 193 27 1 1168 208 53 53 0 chr11 76451662 76451700 -45392156 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1 1168 1205 49 7 0 chr11 76451700 76451844 -45392012 - B1_Mus2 SINE Alu 0 147 3 1 1168 279 30 0 0 chr11 76451845 76451878 -45391978 - B2_Mm2 SINE B2 -154 41 9 1 1168 1277 73 0 6 chr11 76451891 76452070 -45391786 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 1168 234 91 0 0 chr11 76452084 76452117 -45391739 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1168 483 259 26 8 chr11 76452145 76452262 -45391594 + PB1D7 SINE Alu 1 119 -1 1 1168 677 169 174 43 chr11 76452305 76452466 -45391390 - B3A SINE B2 -16 182 1 1 1168 680 234 68 7 chr11 76452633 76452779 -45391077 + RSINE1 SINE B4 5 159 -6 1 1168 23 0 0 0 chr11 76452779 76452802 -45391054 + AT_rich Low_complexity Low_complexity 1 23 0 1 1168 719 199 20 20 chr11 76453528 76453677 -45390179 - B1_Mur2 SINE Alu 0 149 1 1 1168 339 297 59 64 chr11 76453845 76454016 -45389840 + L1MB3 LINE L1 5649 5819 -365 1 1168 508 256 43 73 chr11 76454045 76454277 -45389579 + L1MB3 LINE L1 5901 6125 -58 1 1168 520 183 115 0 chr11 76454305 76454409 -45389447 - B1_Mus1 SINE Alu -13 135 20 1 1168 792 283 23 5 chr11 76454442 76454662 -45389194 - ID_B1 SINE B4 0 224 1 1 1168 246 269 70 102 chr11 76454687 76454844 -45389012 + MT2B2 LTR ERVL 155 306 -278 1 1168 1303 80 11 6 chr11 76454736 76454913 -45388943 + B2_Mm2 SINE B2 17 194 -1 1 1168 1661 169 77 33 chr11 76455329 76455666 -45388190 - ORR1D1 LTR MaLR 0 374 23 1 1168 2244 115 29 58 chr11 76455666 76456044 -45387812 - ORR1B2 LTR MaLR 0 367 1 1 1168 602 287 0 8 chr11 76456044 76456174 -45387682 - B1_Mur1 SINE Alu -20 129 1 1 1168 21 36 0 0 chr11 76456177 76456205 -45387651 + AT_rich Low_complexity Low_complexity 1 28 0 1 1168 228 35 0 0 chr11 76456209 76456238 -45387618 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1168 894 196 45 0 chr11 76456239 76456418 -45387438 - B3A SINE B2 -11 187 1 1 1168 22 0 0 0 chr11 76456430 76456452 -45387404 + AT_rich Low_complexity Low_complexity 1 22 0 1 1168 1392 72 39 0 chr11 76456677 76456858 -45386998 - B2_Mm2 SINE B2 -7 188 1 1 1168 33 25 0 0 chr11 76456931 76456971 -45386885 + AT_rich Low_complexity Low_complexity 1 40 0 1 1168 228 67 0 0 chr11 76457033 76457063 -45386793 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1168 555 259 0 25 chr11 76457070 76457189 -45386667 - RSINE1 SINE B4 -14 151 36 1 1168 393 299 11 0 chr11 76457201 76457288 -45386568 - PB1D10 SINE Alu -28 89 2 1 1168 386 231 13 0 chr11 76457400 76457478 -45386378 + ID4 SINE ID 2 80 -3 1 1168 314 278 0 0 chr11 76458476 76458548 -45385308 + PB1D7 SINE Alu 49 120 0 1 1168 249 292 74 0 chr11 76458891 76458975 -45384881 + L2c LINE L2 3225 3341 -46 1 1168 735 72 0 0 chr11 76458993 76459104 -45384752 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 1168 234 246 123 0 chr11 76460006 76460071 -45383785 + ID4_ SINE ID 2 74 -9 1 1168 423 0 0 0 chr11 76460073 76460120 -45383736 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1168 236 292 91 15 chr11 76460142 76460208 -45383648 - ID4 SINE ID -4 79 9 1 1168 270 241 38 0 chr11 76460235 76460314 -45383542 - ID4 SINE ID 0 83 2 1 1168 874 236 113 137 chr11 76461397 76461663 -45382193 - MTD LTR MaLR -14 405 187 1 1168 486 0 0 0 chr11 76461663 76461717 -45382139 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1168 874 245 110 131 chr11 76461717 76461895 -45381961 - MTD LTR MaLR -233 186 3 1 1168 245 203 48 48 chr11 76461978 76462040 -45381816 + B1_Mus1 SINE Alu 10 71 -77 1 1168 918 209 15 35 chr11 76462217 76462415 -45381441 + B3A SINE B2 2 195 -3 1 1168 1596 140 130 23 chr11 76462590 76462898 -45380958 + ORR1B1 LTR MaLR 40 380 -14 1 1168 834 122 308 0 chr11 76462956 76463112 -45380744 + B3 SINE B2 1 204 -12 1 1168 239 0 32 0 chr11 76463112 76463143 -45380713 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1 1168 288 298 23 63 chr11 76463143 76463375 -45380481 + B4A SINE B4 71 274 -18 1 1168 679 170 27 0 chr11 76463438 76463550 -45380306 + B1_Mur2 SINE Alu 1 115 -34 1 1168 350 244 33 22 chr11 76463570 76463662 -45380194 + B4A SINE B4 1 93 -199 1 1168 580 273 65 16 chr11 76463666 76463852 -45380004 + B3A SINE B2 2 196 -2 1 1168 212 322 28 142 chr11 76463868 76464009 -45379847 + B1F2 SINE Alu 1 125 -24 1 1168 346 217 185 0 chr11 76464178 76464270 -45379586 + PB1D10 SINE Alu 6 114 -3 1 1168 735 12 0 0 chr11 76464287 76464371 -45379485 + (GGGAA)n Simple_repeat Simple_repeat 3 86 0 1 1168 605 77 0 21 chr11 76464665 76464758 -45379098 + (GGGA)n Simple_repeat Simple_repeat 3 93 0 1 1168 428 299 31 83 chr11 76465070 76465139 -45378717 + ID_B1 SINE B4 40 222 -2 1 1168 551 228 32 8 chr11 76465139 76465263 -45378593 + B1F SINE Alu 21 147 -2 1 1168 687 195 0 0 chr11 76465323 76465436 -45378420 - B1_Mur1 SINE Alu -25 124 12 1 1168 662 264 90 0 chr11 76465338 76465505 -45378351 - B4 SINE B4 -94 198 17 1 1168 408 40 0 0 chr11 76465514 76465564 -45378292 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1168 1287 71 41 6 chr11 76465564 76465735 -45378121 - B2_Mm2 SINE B2 -17 178 2 1 1168 192 152 0 0 chr11 76465769 76465802 -45378054 + CT-rich Low_complexity Low_complexity 3 35 0 1 1168 381 247 72 0 chr11 76465804 76465901 -45377955 - PB1 SINE Alu -16 111 8 1 1168 551 157 0 58 chr11 76466052 76466242 -45377614 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1168 182 176 0 19 chr11 76466256 76466308 -45377548 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1168 648 230 206 55 chr11 76466310 76466563 -45377293 - B4 SINE B4 0 292 2 1 1168 234 0 0 0 chr11 76466706 76466732 -45377124 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1168 477 62 0 0 chr11 76466732 76466797 -45377059 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1168 303 240 90 40 chr11 76466799 76466899 -45376957 - PB1D10 SINE Alu -12 105 1 1 1168 612 217 0 0 chr11 76466904 76467010 -45376846 - ID_B1 SINE B4 -28 196 91 1 1168 226 145 40 0 chr11 76467032 76467108 -45376748 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 1 1168 368 286 214 0 chr11 76467115 76467241 -45376615 - RSINE1 SINE B4 -10 155 3 1 1168 884 234 73 30 chr11 76467291 76467429 -45376427 + RLTR20B1 LTR ERVK 320 467 -96 1 1168 540 30 0 0 chr11 76467429 76467495 -45376361 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1168 884 234 73 30 chr11 76467495 76467590 -45376266 + RLTR20B1 LTR ERVK 468 562 -1 1 1168 402 154 0 13 chr11 76467602 76467681 -45376175 - MYSERV16_I-int LTR ERVK -76 2250 2173 1 1168 971 189 18 12 chr11 76467684 76467855 -45376001 - B3 SINE B2 -44 172 1 1 1168 591 282 23 0 chr11 76467881 76468012 -45375844 - B1F SINE Alu -9 140 7 1 1168 250 304 0 55 chr11 76467957 76468030 -45375826 - B4A SINE B4 -146 146 78 1 1168 308 279 97 88 chr11 76468042 76468156 -45375700 - PB1D10 SINE Alu 0 117 3 1 1168 387 0 0 0 chr11 76468235 76468278 -45375578 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1168 583 286 31 38 chr11 76468329 76468489 -45375367 + RSINE1 SINE B4 7 165 0 1 1168 761 65 19 0 chr11 76469054 76469161 -45374695 + (TTCC)n Simple_repeat Simple_repeat 3 111 0 1 1168 234 0 0 0 chr11 76469161 76469187 -45374669 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1168 719 226 0 0 chr11 76469472 76469605 -45374251 + B1_Mur1 SINE Alu 5 137 -12 1 1168 361 269 112 20 chr11 76469628 76469780 -45374076 - RCHARR1 DNA MER1_type -8 966 801 1 1168 808 204 187 6 chr11 76469797 76469979 -45373877 - B3 SINE B2 -1 215 1 1 1168 324 0 0 0 chr11 76470134 76470170 -45373686 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1168 23 33 0 0 chr11 76470237 76470267 -45373589 + AT_rich Low_complexity Low_complexity 1 30 0 1 1168 957 72 177 32 chr11 76470502 76470660 -45373196 - B2_Mm2 SINE B2 -14 181 1 1 1168 515 287 20 40 chr11 76470660 76470809 -45373047 - B4A SINE B4 -52 240 95 1 1168 580 266 28 0 chr11 76470882 76471025 -45372831 - RSINE1 SINE B4 0 165 19 1 1168 245 250 39 13 chr11 76471038 76471115 -45372741 - B4 SINE B4 -213 79 1 1 1168 260 239 30 0 chr11 76471124 76471191 -45372665 - MIRc SINE MIR -108 160 92 1 1168 476 228 35 9 chr11 76471222 76471337 -45372519 + PB1D9 SINE Alu 2 119 -1 1 1168 505 243 183 17 chr11 76471355 76471466 -45372390 + B3 SINE B2 2 128 -88 1 1168 1248 28 0 0 chr11 76471466 76471608 -45372248 + B1_Mus1 SINE Alu 1 142 -6 1 1168 261 0 0 0 chr11 76471610 76471639 -45372217 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1168 505 243 183 17 chr11 76471639 76471704 -45372152 + B3 SINE B2 129 208 -8 1 1168 719 209 49 8 chr11 76472182 76472344 -45371512 + ID_B1 SINE B4 76 241 -51 1 1168 352 269 107 60 chr11 76473467 76473617 -45370239 + MT2B2 LTR ERVL 120 276 -308 1 1168 1018 91 0 0 chr11 76473502 76473634 -45370222 + B1_Mus2 SINE Alu 6 137 -10 1 1168 261 0 0 0 chr11 76473634 76473663 -45370193 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1168 259 178 75 0 chr11 76473796 76473903 -45369953 + G-rich Low_complexity Low_complexity 1 115 0 1 1168 1202 171 18 32 chr11 76474118 76474336 -45369520 + B3 SINE B2 1 215 -1 1 1168 580 274 59 0 chr11 76474534 76474669 -45369187 + RSINE1 SINE B4 1 143 -22 1 1168 753 168 0 39 chr11 76474701 76474831 -45369025 + B2_Mm2 SINE B2 2 126 -69 1 1168 36 0 0 0 chr11 76474835 76474871 -45368985 + AT_rich Low_complexity Low_complexity 1 36 0 1 1168 973 205 55 30 chr11 76474906 76475107 -45368749 - B3 SINE B2 -8 208 3 1 1168 439 107 24 0 chr11 76475119 76475203 -45368653 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1168 243 0 0 0 chr11 76475203 76475229 -45368627 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1168 396 0 0 0 chr11 76475293 76475337 -45368519 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1168 203 200 67 0 chr11 76475588 76475633 -45368223 - L4 LINE RTE -192 1837 1790 1 1168 278 324 7 68 chr11 76476206 76476256 -45367600 - MIRc SINE MIR -54 214 169 1 1168 1153 36 29 7 chr11 76476256 76476396 -45367460 - B1_Mus2 SINE Alu 0 147 5 1 1168 278 329 10 60 chr11 76476396 76476533 -45367323 - MIRc SINE MIR -100 168 43 1 1168 1104 186 0 20 chr11 76476783 76476981 -45366875 - B3 SINE B2 0 216 23 1 1168 979 117 14 20 chr11 76477099 76477247 -45366609 - B1_Mur3 SINE Alu 0 149 3 1 1168 320 259 59 0 chr11 76477485 76477570 -45366286 - PB1D10 SINE Alu -1 116 27 1 1168 223 326 11 53 chr11 76478399 76478418 -45365438 - B4A SINE B4 -118 174 112 1 1168 271 252 0 11 chr11 76478418 76478487 -45365369 - B1F1 SINE Alu -49 71 7 1 1168 405 267 19 19 chr11 76478551 76478643 -45365213 - B1F2 SINE Alu -1 148 57 1 1168 845 244 105 40 chr11 76478643 76479015 -45364841 + RMER17C LTR ERVK 1 396 -14 1 1168 274 286 0 0 chr11 76478992 76479055 -45364801 - B1_Mur4 SINE Alu -87 63 1 1 1168 297 0 0 0 chr11 76479123 76479156 -45364700 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1168 382 248 60 60 chr11 76479159 76479275 -45364581 - ID_B1 SINE B4 -107 117 2 1 1168 368 324 88 0 chr11 76479414 76479550 -45364306 - B3 SINE B2 -25 191 44 1 1168 245 184 0 93 chr11 76479596 76479650 -45364206 + tRNA-Ala-GCY_ tRNA tRNA 8 56 -19 1 1168 686 274 0 0 chr11 76480331 76480466 -45363390 - B1F2 SINE Alu -14 135 1 1 1168 180 77 0 0 chr11 76480526 76480552 -45363304 + (TCTCTG)n Simple_repeat Simple_repeat 3 28 0 1 1168 424 211 137 0 chr11 76481010 76481105 -45362751 - PB1D10 SINE Alu -6 111 4 1 1168 409 187 100 29 chr11 76481739 76481861 -45361995 + B3A SINE B2 83 211 -5 1 1168 1061 125 7 0 chr11 76481867 76482011 -45361845 + B1_Mus1 SINE Alu 3 147 -1 1 1168 270 56 0 0 chr11 76482024 76482060 -45361796 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1168 549 235 0 0 chr11 76482060 76482162 -45361694 - PB1D10 SINE Alu -10 107 6 1 1168 384 326 30 140 chr11 76482069 76482269 -45361587 - ID_B1 SINE B4 -45 179 2 1 1168 442 227 53 72 chr11 76482405 76482557 -45361299 + MIRb SINE MIR 97 245 -23 1 1168 230 250 40 53 chr11 76482947 76483023 -45360833 + MER45A DNA Tip100 86 160 -18 1 1168 362 94 0 15 chr11 76483037 76483102 -45360754 + (TCTCTG)n Simple_repeat Simple_repeat 1 64 0 1 1168 189 0 0 0 chr11 76483176 76483197 -45360659 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 1 1168 794 145 30 8 chr11 76483335 76483467 -45360389 - B1_Mur3 SINE Alu 0 149 15 1 1168 917 238 76 25 chr11 76483721 76483958 -45359898 - B4A SINE B4 -43 249 1 1 1168 309 294 84 47 chr11 76484501 76484608 -45359248 - PB1D10 SINE Alu -6 111 1 1 1168 479 235 193 0 chr11 76484637 76484756 -45359100 - ID_B1 SINE B4 -2 222 81 1 1168 206 163 41 0 chr11 76485056 76485105 -45358751 + CT-rich Low_complexity Low_complexity 3 53 0 1 1168 232 214 24 18 chr11 76485503 76485578 -45358278 - B3A SINE B2 -118 77 2 1 1168 753 29 115 0 chr11 76487543 76487647 -45356209 - B1_Mm SINE Alu 0 147 32 1 1168 449 293 107 35 chr11 76488395 76488605 -45355251 + MIRb SINE MIR 32 246 -22 1 1168 246 81 0 0 chr11 76488818 76488855 -45355001 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1168 35 0 0 0 chr11 76489234 76489269 -45354587 + AT_rich Low_complexity Low_complexity 1 35 0 1 1168 659 278 0 71 chr11 76489291 76489473 -45354383 - B3A SINE B2 -10 188 20 1 1168 491 196 407 13 chr11 76489497 76489647 -45354209 - B3 SINE B2 -6 210 2 1 1168 252 0 0 0 chr11 76489662 76489690 -45354166 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1168 767 208 0 0 chr11 76489690 76489824 -45354032 - B1_Mur1 SINE Alu -10 139 6 1 1168 235 273 45 0 chr11 76489834 76489900 -45353956 - PB1D10 SINE Alu -3 114 46 1 1168 514 300 42 14 chr11 76490172 76490314 -45353542 + RSINE1 SINE B4 3 148 -17 1 1168 429 70 0 0 chr11 76490537 76490594 -45353262 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1168 871 152 12 0 chr11 76490888 76491052 -45352804 + CT-rich Low_complexity Low_complexity 3 168 0 1 1168 283 289 59 49 chr11 76491078 76491180 -45352676 - MER33 DNA MER1_type -197 127 25 1 1168 222 37 0 0 chr11 76491193 76491220 -45352636 + (CTGGGG)n Simple_repeat Simple_repeat 1 27 0 1 1168 745 277 89 19 chr11 76491518 76491776 -45352080 - B4A SINE B4 -6 286 11 1 1168 648 213 0 17 chr11 76491874 76492055 -45351801 + CT-rich Low_complexity Low_complexity 2 179 0 1 1168 195 264 40 99 chr11 76492260 76492361 -45351495 + MIR3 SINE MIR 113 207 -1 1 1168 900 0 0 0 chr11 76492972 76493072 -45350784 + (CTGGGG)n Simple_repeat Simple_repeat 6 105 0 1 1168 207 0 0 0 chr11 76493171 76493194 -45350662 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1168 543 16 0 0 chr11 76493194 76493257 -45350599 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 1168 198 0 0 0 chr11 76493444 76493466 -45350390 + (CAG)n Simple_repeat Simple_repeat 3 24 0 1 1168 494 257 0 26 chr11 76495836 76495952 -45347904 - PB1D10 SINE Alu 0 117 5 1 1168 336 203 27 0 chr11 76495969 76496043 -45347813 - L1MB8 LINE L1 -1 6177 6102 1 1168 538 176 33 0 chr11 76496057 76496148 -45347708 - B1_Mur1 SINE Alu -21 128 35 1 1168 850 203 0 0 chr11 76496161 76496304 -45347552 + B1_Mur1 SINE Alu 1 143 -6 1 1168 311 277 89 0 chr11 76496325 76496437 -45347419 - L1MA6 LINE L1 -15 6285 6164 1 1168 1235 89 6 0 chr11 76496438 76496617 -45347239 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 1168 416 182 11 0 chr11 76496617 76496705 -45347151 + CT-rich Low_complexity Low_complexity 4 92 0 1 1168 1253 100 15 26 chr11 76496722 76496917 -45346939 - B2_Mm2 SINE B2 0 195 3 1 1168 999 212 63 18 chr11 76496987 76497208 -45346648 + B4 SINE B4 2 232 -60 1 1168 236 263 221 0 chr11 76497310 76497405 -45346451 - B1F SINE Alu -33 116 1 1 1168 251 148 48 32 chr11 76497448 76497511 -45346345 - L1M2 LINE L1 -434 5857 5794 1 1168 384 337 49 69 chr11 76497511 76497715 -45346141 - L1MB8 LINE L1 -71 6107 5908 1 1168 827 201 28 0 chr11 76497716 76497860 -45345996 + B1_Mus1 SINE Alu 1 148 0 1 1168 1493 88 0 5 chr11 76498082 76498277 -45345579 + B2_Mm2 SINE B2 1 194 -1 1 1168 198 362 32 11 chr11 76498424 76498519 -45345337 - L2 LINE L2 -562 2857 2761 1 1168 678 78 25 31 chr11 76498596 76498755 -45345101 + (TG)n Simple_repeat Simple_repeat 2 159 0 1 1168 528 16 0 0 chr11 76499183 76499244 -45344612 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1168 446 290 23 64 chr11 76499673 76499846 -45344010 - MIR SINE MIR -1 261 96 1 1168 618 247 17 78 chr11 76500571 76500751 -45343105 + ID_B1 SINE B4 50 218 -6 1 1168 230 333 28 114 chr11 76500612 76500788 -45343068 - YREP_Mm Unknown Unknown -1498 314 154 2 1168 266 314 23 23 chr11 76500794 76500882 -45342974 + MIRb SINE MIR 168 255 -13 3 1168 710 236 13 132 chr11 76501142 76501197 -45342659 - ID_B1 SINE B4 -17 207 157 4 1168 324 0 0 0 chr11 76501197 76501233 -45342623 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1168 710 236 13 132 chr11 76501233 76501245 -45342611 - ID_B1 SINE B4 -68 156 156 6 1168 624 232 22 7 chr11 76501245 76501384 -45342472 - B1_Mur1 SINE Alu -8 141 1 7 1168 710 236 13 132 chr11 76501384 76501549 -45342307 - ID_B1 SINE B4 -68 156 2 4 1168 353 219 0 0 chr11 76501955 76502019 -45341837 - ID4 SINE ID -4 79 16 8 1168 261 288 15 0 chr11 76501961 76502027 -45341829 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 9 1168 391 250 18 44 chr11 76502047 76502160 -45341696 - PB1D10 SINE Alu -3 114 5 1 1168 365 145 27 55 chr11 76502661 76502734 -45341122 + B1_Mur4 SINE Alu 78 148 -2 1 1168 28 0 0 0 chr11 76502758 76502786 -45341070 + AT_rich Low_complexity Low_complexity 1 28 0 1 1168 497 262 23 38 chr11 76502872 76503003 -45340853 - B1F SINE Alu -15 134 6 1 1168 210 37 0 0 chr11 76503437 76503464 -45340392 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 1 1168 421 328 43 27 chr11 76503548 76503736 -45340120 - B4A SINE B4 0 292 102 1 1168 1156 171 39 0 chr11 76503752 76503957 -45339899 - B3 SINE B2 -3 213 1 1 1168 232 250 0 116 chr11 76503963 76504049 -45339807 - B4A SINE B4 0 292 217 1 1168 1076 133 0 0 chr11 76504141 76504291 -45339565 - B1_Mur4 SINE Alu 0 150 1 1 1168 431 35 0 17 chr11 76504333 76504391 -45339465 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1168 954 203 15 45 chr11 76504431 76504632 -45339224 + B3A SINE B2 1 195 -3 2 1168 332 297 0 0 chr11 76504763 76504837 -45339019 - PB1D10 SINE Alu -38 79 6 2 1168 217 304 0 60 chr11 76504781 76504865 -45338991 - B4 SINE B4 -146 146 68 1 1168 396 0 0 0 chr11 76504946 76504990 -45338866 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1168 356 254 0 0 chr11 76505637 76505700 -45338156 + ID4 SINE ID 5 67 -16 2 1168 228 219 0 0 chr11 76506266 76506307 -45337549 + (CCA)n Simple_repeat Simple_repeat 1 41 0 2 1168 339 336 38 23 chr11 76506360 76506491 -45337365 + B1F SINE Alu 2 134 -15 2 1168 338 282 0 13 chr11 76506538 76506617 -45337239 + ID2 SINE ID 2 79 -4 2 1168 197 308 105 32 chr11 76506665 76506789 -45337067 + MIR SINE MIR 16 148 -60 2 1168 453 250 74 0 chr11 76508425 76508533 -45335323 + MER5A1 DNA MER1_type 2 117 -49 2 1168 238 254 149 0 chr11 76508609 76508676 -45335180 + MER5A1 DNA MER1_type 90 166 0 2 1168 457 211 175 24 chr11 76509335 76509461 -45334395 + B1_Mur1 SINE Alu 2 146 -3 2 1168 314 283 82 36 chr11 76509466 76509576 -45334280 - MLT1K LTR MaLR -328 267 153 3 1168 225 0 0 0 chr11 76510979 76511004 -45332852 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1168 1252 209 74 7 chr11 76512408 76512678 -45331178 - B4 SINE B4 -4 288 1 3 1168 297 324 69 0 chr11 76512756 76512858 -45330998 - MIRc SINE MIR -73 195 87 3 1168 265 277 80 60 chr11 76513119 76513192 -45330664 + MIRc SINE MIR 12 89 -179 3 1168 204 40 0 0 chr11 76513192 76513217 -45330639 + (C)n Simple_repeat Simple_repeat 1 25 0 3 1168 265 277 80 60 chr11 76513217 76513293 -45330563 + MIRc SINE MIR 90 163 -105 3 1168 495 87 0 0 chr11 76513679 76513748 -45330108 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1168 476 234 11 36 chr11 76514269 76514408 -45329448 + B1F SINE Alu 13 147 -2 3 1168 352 261 0 0 chr11 76514412 76514481 -45329375 + ID4 SINE ID 3 71 -12 3 1168 558 167 8 85 chr11 76514868 76514986 -45328870 - B1_Mur4 SINE Alu -14 136 28 3 1168 1291 34 0 0 chr11 76514996 76515142 -45328714 - B1_Mm SINE Alu 0 147 2 4 1168 208 71 71 0 chr11 76515186 76515228 -45328628 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 4 1168 426 256 93 14 chr11 76515259 76515296 -45328560 + B4 SINE B4 45 92 -200 4 1168 696 142 35 0 chr11 76515296 76515409 -45328447 + B1_Mur4 SINE Alu 1 117 -33 4 1168 1166 112 50 22 chr11 76515950 76516132 -45327724 - B2_Mm1t SINE B2 -5 188 2 4 1168 793 175 14 28 chr11 76516874 76517015 -45326841 - B1_Mur4 SINE Alu -11 139 1 4 1168 1477 207 18 11 chr11 76517030 76517308 -45326548 + ORR1D2 LTR MaLR 68 347 -23 4 1168 206 255 128 64 chr11 76517454 76517563 -45326293 + MIRb SINE MIR 36 151 -117 4 1168 273 119 48 0 chr11 76517688 76517730 -45326126 - RMER30 DNA MER1_type -151 51 8 4 1168 227 184 128 26 chr11 76517799 76517877 -45325979 + MER5A1 DNA MER1_type 2 87 -79 4 1168 271 280 53 11 chr11 76518049 76518065 -45325791 - B4 SINE B4 -191 101 4 5 1168 427 143 26 13 chr11 76518065 76518143 -45325713 - ID4_ SINE ID -1 82 4 5 1168 265 351 111 67 chr11 76519780 76519883 -45323973 - MLT1J LTR MaLR 0 512 410 5 1168 230 164 145 29 chr11 76519883 76519952 -45323904 + ID4 SINE ID 3 79 -4 5 1168 265 351 111 67 chr11 76519952 76520190 -45323666 - MLT1J LTR MaLR -103 409 156 5 1168 441 0 0 0 chr11 76520327 76520376 -45323480 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1168 336 266 109 9 chr11 76520695 76520805 -45323051 + MER103 DNA DNA 31 151 -15 5 1168 204 40 0 0 chr11 76521561 76521586 -45322270 + (TTTAA)n Simple_repeat Simple_repeat 1 25 0 5 1168 276 208 118 53 chr11 76521816 76521892 -45321964 + ID4_ SINE ID 3 83 0 5 1168 622 244 0 0 chr11 76522005 76522132 -45321724 - B1_Mm SINE Alu -20 127 1 5 1168 285 51 0 0 chr11 76522146 76522185 -45321671 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 5 1168 1300 204 100 21 chr11 76522915 76523255 -45320601 + MTEb LTR MaLR 9 375 -4 6 1168 219 36 0 0 chr11 76523485 76523513 -45320343 + (C)n Simple_repeat Simple_repeat 1 28 0 6 1168 247 276 0 17 chr11 76524009 76524068 -45319788 + polypyrimidine Low_complexity Low_complexity 1 58 0 6 1168 2267 171 3 13 chr11 76524068 76524434 -45319422 + MTC LTR MaLR 1 362 -59 6 1168 1889 124 102 70 chr11 76524434 76524806 -45319050 - ORR1C2 LTR MaLR 0 384 1 6 1168 428 70 35 0 chr11 76524808 76524865 -45318991 + MTC LTR MaLR 363 421 0 6 1168 216 288 54 14 chr11 76524882 76524956 -45318900 - B1F SINE Alu -51 98 22 6 1168 382 226 189 61 chr11 76525020 76525152 -45318704 - RSINE1 SINE B4 -15 150 2 6 1168 950 178 120 22 chr11 76526116 76526300 -45317556 - B3 SINE B2 -13 203 2 6 1168 1024 63 46 17 chr11 76526301 76526542 -45317314 + (TAGA)n Simple_repeat Simple_repeat 1 248 0 6 1168 21 0 0 0 chr11 76526757 76526778 -45317078 + AT_rich Low_complexity Low_complexity 1 21 0 6 1168 296 176 0 0 chr11 76526791 76526842 -45317014 - B1F1 SINE Alu -89 60 10 7 1168 450 0 0 0 chr11 76527428 76527478 -45316378 + (TGG)n Simple_repeat Simple_repeat 1 50 0 7 1168 223 213 0 176 chr11 76527494 76527585 -45316271 - RSINE1 SINE B4 0 165 91 7 1168 716 207 50 7 chr11 76527641 76527782 -45316074 + B1_Mur3 SINE Alu 2 148 -1 7 1168 306 0 0 0 chr11 76527799 76527833 -45316023 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1168 301 272 122 37 chr11 76527834 76528085 -45315771 - RSINE1 SINE B4 -14 278 10 7 1168 454 200 44 11 chr11 76528203 76528294 -45315562 - B1_Mur2 SINE Alu 0 149 56 7 1168 260 242 62 21 chr11 76528301 76528398 -45315458 - L1M4 LINE L1 -650 5528 5428 7 1168 595 328 120 20 chr11 76528502 76529012 -45314844 + L1M5 LINE L1 4487 5047 -1099 7 1168 707 145 0 183 chr11 76529096 76529265 -45314591 + B1_Mur2 SINE Alu 1 138 -11 7 1168 230 0 33 0 chr11 76529265 76529295 -45314561 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1168 467 205 12 0 chr11 76529415 76529498 -45314358 + B1F SINE Alu 12 95 -54 8 1168 269 179 0 138 chr11 76529443 76529508 -45314348 + 4.5SRNA scRNA scRNA 39 94 0 8 1168 272 196 0 0 chr11 76529604 76529650 -45314206 - ID_B1 SINE B4 -75 149 104 8 1168 355 256 3 3 chr11 76529737 76529825 -45314031 - B1F SINE Alu -2 118 31 8 1168 379 280 40 0 chr11 76529916 76530016 -45313840 - B1F SINE Alu -16 133 30 8 1168 723 88 40 33 chr11 76530781 76530933 -45312923 + GA-rich Low_complexity Low_complexity 1 153 0 8 1168 263 160 0 20 chr11 76530985 76531026 -45312830 + B3A SINE B2 2 42 -156 8 1168 868 197 0 0 chr11 76531026 76531168 -45312688 + B1_Mur4 SINE Alu 2 143 -7 8 1168 1147 226 114 62 chr11 76531177 76531821 -45312035 + RMER1B Other Other 369 1064 -2 8 1168 1004 219 11 5 chr11 76531823 76532007 -45311849 + B3 SINE B2 27 211 -5 8 1168 690 187 149 5 chr11 76532370 76532558 -45311298 + ID_B1 SINE B4 10 224 0 9 1168 541 124 121 20 chr11 76532754 76532853 -45311003 - B1_Mur3 SINE Alu -6 143 35 9 1168 1024 30 0 22 chr11 76532853 76532991 -45310865 + (TTTC)n Simple_repeat Simple_repeat 3 137 0 9 1168 1217 15 0 0 chr11 76532991 76533125 -45310731 - B1_Mus2 SINE Alu -11 136 3 9 1168 251 0 0 56 chr11 76533266 76533302 -45310554 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 9 1168 387 113 0 0 chr11 76533636 76533698 -45310158 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1168 948 243 15 0 chr11 76533698 76533900 -45309956 + B3 SINE B2 8 212 -4 9 1168 810 204 14 0 chr11 76533947 76534094 -45309762 + B1_Mur4 SINE Alu 1 149 -1 9 1168 252 86 0 0 chr11 76534353 76534388 -45309468 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1168 190 258 15 29 chr11 76534829 76534897 -45308959 - L2c LINE L2 -17 3370 3304 9 1168 283 325 78 47 chr11 76535040 76535169 -45308687 + MLT1A0 LTR MaLR 20 152 -213 1 1168 373 216 207 0 chr11 76535205 76535321 -45308535 + MLT1A0 LTR MaLR 226 365 0 1 1168 234 178 0 0 chr11 76535396 76535441 -45308415 - L1MB8 LINE L1 -117 6061 6017 1 1168 319 348 52 29 chr11 76535790 76536000 -45307856 + RMER15 LTR ERVL 344 558 -17 1 1168 673 347 4 8 chr11 76536194 76536432 -45307424 + RMER15-int LTR ERVL 271 507 -4492 1 1168 321 291 65 45 chr11 76536454 76536609 -45307247 + RMER15-int LTR ERVL 584 741 -4258 1 1168 1901 289 115 24 chr11 76536637 76537573 -45306283 + RMER15-int LTR ERVL 790 1811 -3188 1 1168 325 344 74 18 chr11 76537689 76537852 -45306004 + RMER15-int LTR ERVL 2194 2365 -2634 1 1168 350 242 0 0 chr11 76539019 76539085 -45304771 + ID4 SINE ID 2 67 -16 1 1168 311 295 22 33 chr11 76539499 76539519 -45304337 - ID_B1 SINE B4 -124 100 11 1 1168 357 254 0 0 chr11 76539519 76539590 -45304266 - ID4 SINE ID -2 81 11 1 1168 908 164 149 22 chr11 76539802 76539983 -45303873 - B3 SINE B2 -12 204 1 1 1168 25 0 0 0 chr11 76540110 76540135 -45303721 + AT_rich Low_complexity Low_complexity 1 25 0 1 1168 290 232 120 50 chr11 76541226 76541326 -45302530 + PB1D10 SINE Alu 1 107 -10 1 1168 24 0 0 0 chr11 76541415 76541439 -45302417 + AT_rich Low_complexity Low_complexity 1 24 0 1 1168 234 233 0 0 chr11 76544081 76544167 -45299689 + (CAGG)n Simple_repeat Simple_repeat 2 87 0 1 1168 660 103 0 20 chr11 76544186 76544285 -45299571 + B1_Mur3 SINE Alu 42 138 -11 1 1168 615 238 105 50 chr11 76544677 76544695 -45299161 + B3A SINE B2 1 16 -182 1 1168 2867 128 81 20 chr11 76544695 76545189 -45298667 + RLTR28 LTR ERVL 1 524 0 1 1168 615 238 105 50 chr11 76545189 76545351 -45298505 + B3A SINE B2 17 191 -7 1 1168 214 259 37 0 chr11 76545724 76545778 -45298078 - B4A SINE B4 -235 57 2 1 1168 200 229 21 0 chr11 76545802 76545850 -45298006 - L2a LINE L2 -25 3401 3353 1 18 658 116 68 43 chr11 76545983 76546100 -45297756 - PB1D9 SINE Alu 0 120 1 1 1169 261 203 14 111 chr11 76546203 76546275 -45297581 + PB1 SINE Alu 30 94 -33 1 1169 2086 164 113 51 chr11 76546283 76546752 -45297104 + RMER15 LTR ERVL 13 510 -65 1 1169 361 262 82 27 chr11 76546891 76547001 -45296855 + B4A SINE B4 1 116 -176 1 1169 297 288 12 59 chr11 76547068 76547153 -45296703 + RSINE1 SINE B4 75 155 -10 1 1169 207 346 105 37 chr11 76547184 76547346 -45296510 + MIRc SINE MIR 60 232 -36 1 1169 225 163 0 39 chr11 76549383 76549434 -45294422 + A-rich Low_complexity Low_complexity 2 50 0 1 1169 272 179 0 97 chr11 76549782 76549844 -45294012 - B1F2 SINE Alu -81 68 13 1 1169 454 244 163 30 chr11 76550392 76550527 -45293329 - RSINE1 SINE B4 0 165 13 1 1169 197 336 103 32 chr11 76550613 76550739 -45293117 + MIR SINE MIR 74 208 -54 1 1169 1028 89 12 211 chr11 76551760 76552002 -45291854 + B2_Mm2 SINE B2 2 195 0 1 1169 706 246 14 0 chr11 76552244 76552386 -45291470 + ID_B1 SINE B4 81 224 0 1 1169 360 0 0 0 chr11 76552518 76552558 -45291298 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1169 441 0 0 0 chr11 76552888 76552937 -45290919 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1169 1146 178 31 18 chr11 76553130 76553353 -45290503 + URR1A DNA MER1_type 1 226 0 1 1169 359 301 57 0 chr11 76553429 76553565 -45290291 + L2b LINE L2 3273 3426 0 1 1169 734 207 7 0 chr11 76553755 76553890 -45289966 + B1_Mur3 SINE Alu 14 149 0 1 1169 244 312 37 24 chr11 76553997 76554079 -45289777 + B4A SINE B4 107 189 -103 1 1169 306 188 62 15 chr11 76554366 76554431 -45289425 - L1MC LINE L1 -883 5263 5196 1 1169 318 272 82 77 chr11 76554795 76554978 -45288878 - B2_Mm2 SINE B2 -9 186 3 1 1169 453 278 37 15 chr11 76555139 76555274 -45288582 + B4 SINE B4 1 138 -154 1 1169 297 194 0 111 chr11 76555523 76555604 -45288252 + PB1D9 SINE Alu 42 113 -7 1 1169 235 196 0 121 chr11 76555553 76555611 -45288245 + ID_B1 SINE B4 174 224 0 1 1169 691 257 171 0 chr11 76555620 76555807 -45288049 + ID_B1 SINE B4 5 223 -1 1 1169 279 0 0 0 chr11 76556509 76556540 -45287316 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1169 225 0 0 0 chr11 76556540 76556564 -45287292 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1169 492 301 107 33 chr11 76556576 76556847 -45287009 - B4A SINE B4 0 292 2 1 1169 2657 169 46 0 chr11 76557434 76557937 -45285919 + RLTR11A2 LTR ERVK 2 527 0 1 1169 808 247 132 24 chr11 76558333 76558748 -45285108 + L1M5 LINE L1 3506 3965 -2181 1 1169 921 71 42 0 chr11 76558781 76558949 -45284907 + (CAAAC)n Simple_repeat Simple_repeat 3 177 0 1 1169 317 102 17 0 chr11 76558954 76559013 -45284843 + (CAACC)n Simple_repeat Simple_repeat 5 64 0 1 1169 189 0 0 0 chr11 76559013 76559034 -45284822 + (CCAA)n Simple_repeat Simple_repeat 1 21 0 1 1169 530 257 137 23 chr11 76559038 76559257 -45284599 + L1MC4a LINE L1 6741 6984 -898 1 1169 844 164 169 6 chr11 76559512 76559690 -45284166 + B3 SINE B2 1 207 -9 1 1169 261 0 0 0 chr11 76559713 76559742 -45284114 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1169 372 250 28 0 chr11 76559754 76559826 -45284030 - RSINE1 SINE B4 -18 147 74 1 1169 342 316 0 30 chr11 76559824 76559925 -45283931 + RSINE1 SINE B4 60 157 -8 1 1169 450 322 56 42 chr11 76559956 76560244 -45283612 + B4A SINE B4 1 292 0 1 1169 189 196 0 0 chr11 76560435 76560481 -45283375 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1169 323 314 38 9 chr11 76560482 76560588 -45283268 - PB1D7 SINE Alu -11 109 1 1 1169 23 0 0 0 chr11 76560593 76560616 -45283240 + AT_rich Low_complexity Low_complexity 1 23 0 1 1169 236 53 26 0 chr11 76560627 76560665 -45283191 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1169 1107 51 0 21 chr11 76560665 76560805 -45283051 - B1_Mus1 SINE Alu -11 137 1 1 1169 939 194 106 0 chr11 76560805 76560984 -45282872 - B3 SINE B2 -15 201 3 1 1169 1245 25 0 6 chr11 76561030 76561191 -45282665 + B2_Mm1a SINE B2 1 160 -33 1 1169 387 56 42 0 chr11 76561191 76561262 -45282594 + (TAAA)n Simple_repeat Simple_repeat 3 76 0 1 1169 410 210 14 3 chr11 76561726 76561816 -45282040 - PB1D9 SINE Alu -57 92 3 1 1169 784 157 50 7 chr11 76562646 76562787 -45281069 - B1_Mur3 SINE Alu 0 149 3 1 1169 207 0 0 0 chr11 76563253 76563276 -45280580 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1 1169 347 270 0 0 chr11 76564658 76564732 -45279124 - ID4 SINE ID -8 75 2 1 1169 245 210 16 0 chr11 76564978 76565040 -45278816 + GA-rich Low_complexity Low_complexity 1 63 0 1 1169 585 302 74 11 chr11 76565052 76565269 -45278587 + B4A SINE B4 47 280 -12 1 1169 717 77 256 0 chr11 76565319 76565436 -45278420 - B1_Mus2 SINE Alu 0 147 1 1 1169 394 235 78 0 chr11 76565547 76565649 -45278207 + PB1D10 SINE Alu 1 110 -7 1 1169 198 103 0 0 chr11 76565656 76565685 -45278171 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1169 397 197 31 12 chr11 76565842 76565938 -45277918 - PB1D10 SINE Alu -17 103 3 1 1169 384 246 22 116 chr11 76565938 76565996 -45277860 - ID SINE ID -140 84 40 1 1169 237 330 53 0 chr11 76566304 76566398 -45277458 - PB1D10 SINE Alu -1 116 18 1 1169 1144 62 7 0 chr11 76566673 76566819 -45277037 - B1_Mus2 SINE Alu 0 147 1 1 1169 567 264 8 0 chr11 76566829 76566958 -45276898 - B1F1 SINE Alu -8 141 12 1 1169 659 237 8 8 chr11 76566979 76567111 -45276745 + RSINE1 SINE B4 3 134 -31 1 1169 342 45 0 0 chr11 76567111 76567155 -45276701 + (CATA)n Simple_repeat Simple_repeat 4 47 0 1 1169 922 291 39 25 chr11 76567205 76567487 -45276369 - B4A SINE B4 0 292 7 1 1169 626 228 16 8 chr11 76567513 76567641 -45276215 - B1_Mur1 SINE Alu -8 141 13 1 1169 560 230 9 0 chr11 76568437 76568550 -45275306 + RSINE1 SINE B4 4 117 -48 1 1169 5600 175 71 18 chr11 76568550 76569717 -45274139 + Lx5 LINE L1 5822 7050 0 1 1169 927 55 11 177 chr11 76569732 76569907 -45273949 + B1_Mus2 SINE Alu 2 147 0 1 1169 185 111 44 0 chr11 76569927 76569972 -45273884 + A-rich Low_complexity Low_complexity 2 48 0 1 1169 780 56 0 0 chr11 76570741 76570848 -45273008 - B1_Mus2 SINE Alu -39 108 2 1 1169 589 251 49 32 chr11 76570924 76571109 -45272747 - B3 SINE B2 -1 215 28 1 1169 422 245 32 0 chr11 76571324 76571418 -45272438 + B1F1 SINE Alu 1 97 -52 1 1169 346 309 19 9 chr11 76571327 76571435 -45272421 + ID_B1 SINE B4 85 193 -31 1 1169 208 257 14 41 chr11 76571590 76571663 -45272193 + L2c LINE L2 3313 3383 -4 1 1169 897 107 67 36 chr11 76571789 76571954 -45271902 + B2_Mm2 SINE B2 17 186 -9 1 1169 2218 57 94 0 chr11 76572124 76572423 -45271433 + ORR1A2 LTR MaLR 1 327 0 1 1169 1408 79 11 0 chr11 76572750 76572939 -45270917 + B2_Mm1t SINE B2 2 192 -1 1 1169 872 129 0 41 chr11 76573761 76573907 -45269949 + B1_Mur3 SINE Alu 1 140 -9 1 1169 974 102 22 0 chr11 76574113 76574250 -45269606 + B1_Mus1 SINE Alu 1 140 -8 1 1169 396 0 0 0 chr11 76574254 76574298 -45269558 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1169 230 299 81 0 chr11 76574348 76574435 -45269421 - PB1D10 SINE Alu -18 99 6 1 1169 247 224 30 0 chr11 76574557 76574624 -45269232 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 1 1169 23 0 0 0 chr11 76575369 76575392 -45268464 + AT_rich Low_complexity Low_complexity 1 23 0 1 1169 338 149 30 0 chr11 76575560 76575627 -45268229 + (TATG)n Simple_repeat Simple_repeat 4 72 0 1 1169 787 263 46 14 chr11 76577390 76577606 -45266250 + ID_B1 SINE B4 1 223 -1 1 1169 258 271 135 36 chr11 76577770 76577881 -45265975 - B1F SINE Alu -26 123 2 2 1169 718 243 65 6 chr11 76577881 76577952 -45265904 - B4A SINE B4 -195 97 17 2 1169 273 320 32 104 chr11 76577957 76578177 -45265679 + RLTR42-int LTR ERVK 1148 1351 -4171 2 1169 684 190 8 0 chr11 76578812 76578933 -45264923 + B1_Mur2 SINE Alu 1 122 -27 2 1169 1246 157 35 53 chr11 76578935 76579163 -45264693 + URR1B DNA MER1_type 1 224 -1 2 1169 368 309 86 0 chr11 76579213 76579365 -45264491 - L1MDa LINE L1 -6410 223 59 2 1169 1130 67 127 0 chr11 76579637 76579802 -45264054 - Lx4A LINE L1 -337 6721 6536 2 1169 1854 126 22 112 chr11 76579800 76580166 -45263690 + Lx4A LINE L1 6725 7057 -1 2 1169 879 264 80 15 chr11 76580633 76580895 -45262961 + B4A SINE B4 7 285 -7 2 1169 222 271 17 0 chr11 76580908 76580967 -45262889 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1169 303 49 0 0 chr11 76581244 76581285 -45262571 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1169 4917 102 14 36 chr11 76581771 76582096 -45261760 - Lx2 LINE L1 -1 6996 6688 2 1169 2925 68 39 3 chr11 76582096 76582479 -45261377 + MTB LTR MaLR 1 397 -3 2 1169 4917 102 14 36 chr11 76582479 76582926 -45260930 - Lx2 LINE L1 -310 6687 6241 2 1169 5734 91 25 11 chr11 76582926 76583778 -45260078 + MusHAL1 LINE L1 1104 1967 -745 2 1169 771 247 124 9 chr11 76584694 76584919 -45258937 - B4A SINE B4 0 292 42 2 1169 280 274 28 9 chr11 76585378 76585474 -45258382 - B1F1 SINE Alu -9 140 41 2 1169 1387 68 20 26 chr11 76585480 76585675 -45258181 - B2_Mm2 SINE B2 -1 194 1 2 1169 192 77 0 0 chr11 76585831 76585857 -45257999 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1169 195 42 0 0 chr11 76585930 76585954 -45257902 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1169 794 212 14 14 chr11 76586473 76586621 -45257235 - B1_Mur2 SINE Alu 0 149 2 2 1169 476 278 93 10 chr11 76586809 76587002 -45256854 - B3 SINE B2 -6 210 2 2 1169 241 326 154 23 chr11 76587032 76587252 -45256604 - L1MC4 LINE L1 -5534 681 433 2 1169 1783 234 82 26 chr11 76587297 76587837 -45256019 + RCHARR1 DNA MER1_type 24 593 -381 2 1169 309 195 33 33 chr11 76587959 76588049 -45255807 + RCHARR1 DNA MER1_type 800 889 -85 2 1169 262 289 127 68 chr11 76588074 76588311 -45255545 - L1MC4 LINE L1 -5856 359 109 2 1169 398 225 17 51 chr11 76588331 76588448 -45255408 - PB1D10 SINE Alu 0 117 5 2 1169 447 189 119 2 chr11 76589537 76589640 -45254216 - B1_Mur2 SINE Alu -8 112 1 2 1169 3460 83 23 2 chr11 76589996 76590476 -45253380 - L1_Mus3 LINE L1 0 6638 6149 2 1169 1029 65 0 80 chr11 76590522 76590672 -45253184 + B1_Mm SINE Alu 1 138 -9 2 1169 755 102 0 73 chr11 76596215 76596373 -45247483 + CT-rich Low_complexity Low_complexity 30 177 0 2 1169 1011 74 11 43 chr11 76596373 76596557 -45247299 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 2 1169 755 102 0 73 chr11 76596557 76596589 -45247267 + polypyrimidine Low_complexity Low_complexity 1 29 0 2 1169 459 52 0 0 chr11 76596662 76596720 -45247136 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 2 1169 601 255 68 14 chr11 76596767 76596914 -45246942 - RSINE1 SINE B4 -6 159 5 2 1169 299 253 84 0 chr11 76596935 76597018 -45246838 - B1F1 SINE Alu -18 131 42 2 1169 829 234 32 46 chr11 76598028 76598247 -45245609 + B3 SINE B2 1 216 0 2 1169 210 37 0 0 chr11 76598709 76598736 -45245120 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1169 487 312 56 56 chr11 76599266 76599554 -45244302 + B4A SINE B4 3 290 -2 2 1169 339 121 0 0 chr11 76599555 76599613 -45244243 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1169 225 225 0 0 chr11 76599700 76599740 -45244116 + ID4 SINE ID 35 74 -9 2 1169 4173 172 104 2 chr11 76600421 76601258 -45242598 - Lx9 LINE L1 0 7644 6723 2 1169 757 241 43 52 chr11 76601870 76602080 -45241776 - B3 SINE B2 -8 208 1 2 1169 536 293 172 8 chr11 76602217 76602613 -45241243 + L1MB5 LINE L1 4588 5048 -1098 2 1169 348 209 99 0 chr11 76602649 76602740 -45241116 + RSINE1 SINE B4 53 152 -13 2 1169 229 287 15 58 chr11 76602768 76602890 -45240966 + L1M2 LINE L1 5188 5304 -839 2 1169 847 215 89 39 chr11 76602890 76603093 -45240763 - B3 SINE B2 0 216 4 2 1169 229 287 15 58 chr11 76603093 76603107 -45240749 + L1M2 LINE L1 5305 5318 -825 2 1169 489 282 0 0 chr11 76603145 76603255 -45240601 - RSINE1 SINE B4 -53 112 3 2 1169 1272 261 145 77 chr11 76603256 76603775 -45240081 + L1MB5 LINE L1 5308 5894 -280 2 1169 1162 64 0 0 chr11 76603775 76603916 -45239940 + B1_Mus2 SINE Alu 1 141 -6 2 1169 1272 261 145 77 chr11 76603916 76604174 -45239682 + L1MB5 LINE L1 5895 6138 -36 2 1169 830 146 36 21 chr11 76605606 76605739 -45238117 + B1_Mus1 SINE Alu 1 137 -11 2 1169 297 0 0 0 chr11 76605739 76605772 -45238084 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 1169 252 0 0 0 chr11 76606017 76606045 -45237811 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1169 440 283 75 37 chr11 76606630 76606817 -45237039 + MER58A DNA MER1_type 31 224 0 2 1169 881 270 54 41 chr11 76606984 76607301 -45236555 + MTEb LTR MaLR 1 321 -58 2 1169 708 275 87 15 chr11 76607566 76607762 -45236094 + ID_B1 SINE B4 14 223 -1 2 1169 236 318 15 0 chr11 76607837 76607903 -45235953 + MER5B DNA MER1_type 99 165 -13 2 1169 211 296 83 36 chr11 76608278 76608362 -45235494 + MIRb SINE MIR 166 253 -15 2 1169 1173 62 7 0 chr11 76609225 76609371 -45234485 + B1_Mus1 SINE Alu 1 147 -1 2 1169 288 130 0 0 chr11 76609373 76609419 -45234437 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 2 1169 21 0 0 0 chr11 76609740 76609761 -45234095 + AT_rich Low_complexity Low_complexity 1 21 0 2 1169 22 0 0 0 chr11 76611546 76611568 -45232288 + AT_rich Low_complexity Low_complexity 1 22 0 2 1169 565 197 111 0 chr11 76611633 76611750 -45232106 + B1_Mur2 SINE Alu 2 131 -18 2 1169 189 0 0 0 chr11 76611752 76611773 -45232083 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 1169 971 176 83 25 chr11 76611781 76611985 -45231871 + B3 SINE B2 1 216 0 2 1169 324 269 64 9 chr11 76612411 76612520 -45231336 + PB1D10 SINE Alu 1 115 -2 2 1169 615 60 0 0 chr11 76612630 76612714 -45231142 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 2 1169 252 113 53 70 chr11 76612762 76612819 -45231037 + PB1 SINE Alu 62 117 -10 2 1169 271 143 0 0 chr11 76612782 76612824 -45231032 + ID_B1 SINE B4 177 218 -6 2 1169 767 249 127 0 chr11 76613993 76614174 -45229682 + B3 SINE B2 4 207 -9 2 1169 279 0 0 0 chr11 76614176 76614207 -45229649 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1169 198 0 0 0 chr11 76614298 76614320 -45229536 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1169 342 249 381 7 chr11 76614879 76615029 -45228827 + B3A SINE B2 1 206 -10 2 1169 271 114 250 0 chr11 76616246 76616290 -45227566 + Lx8 LINE L1 7087 7141 -332 2 1169 1130 200 106 14 chr11 76616911 76617213 -45226643 + MTD LTR MaLR 62 406 -13 2 1169 315 0 0 0 chr11 76617518 76617553 -45226303 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1169 415 254 194 5 chr11 76617877 76618076 -45225780 - B4A SINE B4 -14 278 42 2 1169 230 243 52 70 chr11 76618218 76618333 -45225523 - B1_Mur3 SINE Alu -21 128 16 2 1169 2435 131 182 86 chr11 76618474 76618552 -45225304 + RMER4B LTR ERVK 1 64 -521 2 1169 1213 61 0 0 chr11 76618552 76618699 -45225157 + B1_Mus1 SINE Alu 2 148 0 2 1169 2435 131 182 86 chr11 76618699 76619154 -45224702 + RMER4B LTR ERVK 65 585 0 2 1169 473 181 0 0 chr11 76620489 76620572 -45223284 + MTE2a LTR MaLR 289 371 -8 2 1169 999 226 14 19 chr11 76621036 76621248 -45222608 - ID_B1 SINE B4 -8 216 6 2 1169 369 0 0 0 chr11 76621371 76621412 -45222444 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1169 468 340 34 7 chr11 76621593 76621728 -45222128 + RSINE1 SINE B4 8 146 -19 2 1169 450 0 0 0 chr11 76621728 76621778 -45222078 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1169 468 340 34 7 chr11 76621778 76621790 -45222066 + RSINE1 SINE B4 147 158 -7 2 1169 269 240 26 111 chr11 76621852 76621969 -45221887 + B1F2 SINE Alu 41 147 -2 2 1169 197 108 27 0 chr11 76621976 76622013 -45221843 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 2 1169 180 0 0 0 chr11 76622545 76622565 -45221291 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1169 22 0 0 0 chr11 76622646 76622668 -45221188 + AT_rich Low_complexity Low_complexity 1 22 0 2 1169 247 252 127 78 chr11 76623520 76623662 -45220194 + LTR48 LTR ERV1 609 757 -30 2 1169 247 279 47 0 chr11 76623993 76624079 -45219777 + MLT2B3 LTR ERVL 6 95 -459 2 1169 307 133 0 0 chr11 76624181 76624226 -45219630 - B3 SINE B2 -86 130 86 2 1169 734 271 189 0 chr11 76624727 76624971 -45218885 + B4A SINE B4 3 292 0 2 1169 319 134 29 15 chr11 76624974 76625042 -45218814 + (CATA)n Simple_repeat Simple_repeat 3 71 0 2 1169 798 150 7 39 chr11 76627237 76627390 -45216466 - B1_Mur2 SINE Alu 0 149 2 2 1169 1017 188 41 55 chr11 76627461 76627680 -45216176 - B3 SINE B2 0 216 1 2 1169 297 286 0 0 chr11 76627922 76627985 -45215871 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 2 1169 1290 97 11 21 chr11 76628691 76628881 -45214975 + B2_Mm2 SINE B2 1 188 -7 2 1169 531 299 34 29 chr11 76629158 76629365 -45214491 + MTEb LTR MaLR 171 378 -1 2 1169 367 238 39 10 chr11 76630375 76630477 -45213379 - Ricksha_c DNA MuDR -1594 454 350 2 1169 385 247 62 0 chr11 76630565 76630662 -45213194 - L1MB2 LINE L1 -79 6092 5990 2 1169 30 0 0 0 chr11 76630766 76630796 -45213060 + AT_rich Low_complexity Low_complexity 1 30 0 2 1169 716 218 117 20 chr11 76631256 76631453 -45212403 + B3 SINE B2 1 216 0 2 1169 533 216 25 17 chr11 76631817 76631935 -45211921 + PB1D9 SINE Alu 2 120 0 2 1169 28 0 0 0 chr11 76632184 76632212 -45211644 + AT_rich Low_complexity Low_complexity 1 28 0 2 1169 327 340 39 24 chr11 76632515 76632720 -45211136 - L1M5 LINE L1 -384 5795 5588 3 1169 234 0 0 0 chr11 76632726 76632752 -45211104 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1169 689 79 75 1 chr11 76632752 76632867 -45210989 - B1_Mus1 SINE Alu 0 120 2 3 1169 405 250 18 43 chr11 76632873 76633036 -45210820 - L1M5 LINE L1 -601 5578 5420 3 1169 299 276 46 57 chr11 76633219 76633401 -45210455 + L1MD2 LINE L1 864 1045 -5502 3 1169 203 256 0 0 chr11 76633401 76633444 -45210412 + GA-rich Low_complexity Low_complexity 1 43 0 3 1169 286 304 120 19 chr11 76633857 76634065 -45209791 + L1MD2 LINE L1 1890 2118 -4522 3 1169 433 202 53 0 chr11 76634072 76634166 -45209690 + PB1D9 SINE Alu 20 118 -2 3 1169 453 19 0 0 chr11 76634221 76634275 -45209581 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1169 340 262 12 0 chr11 76634285 76634365 -45209491 + PB1D10 SINE Alu 29 109 -8 3 1169 233 178 195 41 chr11 76634869 76634992 -45208864 + L1MD2 LINE L1 2786 2927 -3617 3 1169 303 282 0 49 chr11 76636042 76636124 -45207732 - ID4 SINE ID -2 81 4 3 1169 894 177 80 0 chr11 76636328 76636503 -45207353 - B3 SINE B2 -27 189 1 3 1169 564 159 47 0 chr11 76636826 76636933 -45206923 + B1_Mus1 SINE Alu 35 146 -2 3 1169 183 139 0 0 chr11 76636933 76636969 -45206887 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 3 1169 932 302 51 69 chr11 76637091 76637525 -45206331 - MER44B DNA MER2_type -123 427 2 3 1169 488 173 66 19 chr11 76637693 76637799 -45206057 - B1_Mus1 SINE Alu -13 135 25 3 1169 1431 63 16 26 chr11 76638763 76638957 -45204899 - B2_Mm2 SINE B2 0 195 4 3 1169 21 0 0 0 chr11 76639117 76639138 -45204718 + AT_rich Low_complexity Low_complexity 1 21 0 3 1169 1404 263 6 8 chr11 76639141 76639498 -45204358 - Lx6 LINE L1 -26 7434 7079 3 1169 361 205 0 60 chr11 76641021 76641104 -45202752 - ID4 SINE ID -5 78 1 3 1169 491 269 62 28 chr11 76641193 76641369 -45202487 + B3A SINE B2 3 184 -14 3 1169 198 0 0 0 chr11 76641426 76641448 -45202408 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1169 4381 24 2 0 chr11 76641626 76642118 -45201738 + MT2_Mm LTR ERVL 1 493 0 3 1169 48503 16 6 0 chr11 76642118 76647456 -45196400 + MERVL-int LTR ERVL 1 5371 -114 3 1169 329 125 26 53 chr11 76647456 76647532 -45196324 + ORR1A3-int LTR MaLR 567 640 -1323 3 1169 321 0 0 0 chr11 76647532 76647570 -45196286 + MERVL-int LTR ERVL 5448 5485 0 3 1169 4381 24 2 0 chr11 76647570 76648062 -45195794 + MT2_Mm LTR ERVL 1 493 0 3 1169 756 245 82 43 chr11 76648563 76648819 -45195037 - B4 SINE B4 -1 291 26 3 1169 331 200 150 0 chr11 76648918 76648998 -45194858 + PB1 SINE Alu 34 125 -2 3 1169 702 183 234 0 chr11 76649002 76649177 -45194679 + B3 SINE B2 1 216 0 3 1169 288 258 30 0 chr11 76649205 76649271 -45194585 + ID4 SINE ID 3 70 -13 3 1169 264 346 29 0 chr11 76649590 76649694 -45194162 + L2a LINE L2 3316 3422 -4 3 1169 535 144 44 0 chr11 76650679 76650769 -45193087 + B1F2 SINE Alu 1 94 -55 3 1169 280 244 95 24 chr11 76651036 76651120 -45192736 - B1F1 SINE Alu -59 90 1 3 1169 563 273 163 12 chr11 76651192 76651437 -45192419 - B4A SINE B4 -9 283 2 3 1169 901 200 47 47 chr11 76651503 76651718 -45192138 - B3 SINE B2 -1 215 1 3 1169 1299 265 37 42 chr11 76651737 76652194 -45191662 + L1MB4 LINE L1 5660 6114 -66 3 1169 275 298 0 56 chr11 76652221 76652310 -45191546 + PB1D10 SINE Alu 2 85 -32 3 1169 214 262 0 32 chr11 76652313 76652376 -45191480 + ID4 SINE ID 21 81 -2 3 1169 271 144 56 8 chr11 76652446 76652572 -45191284 + (TA)n Simple_repeat Simple_repeat 1 132 0 3 1169 404 158 56 27 chr11 76652583 76652929 -45190927 + (TA)n Simple_repeat Simple_repeat 1 356 0 3 1169 730 245 0 0 chr11 76653271 76653422 -45190434 - RSINE1 SINE B4 -13 152 2 3 1169 261 75 0 0 chr11 76654255 76654295 -45189561 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 3 1169 231 192 19 19 chr11 76654301 76654354 -45189502 - ID4_ SINE ID -8 75 23 3 1169 500 267 93 7 chr11 76654384 76654535 -45189321 + RSINE1 SINE B4 2 165 0 3 1169 343 254 15 0 chr11 76654568 76654635 -45189221 + ID4 SINE ID 5 72 -11 3 1169 261 256 0 60 chr11 76654782 76654865 -45188991 + MADE2 DNA Mariner 1 78 -2 3 1169 28 79 0 0 chr11 76656708 76656771 -45187085 + AT_rich Low_complexity Low_complexity 1 63 0 3 1169 1087 82 0 20 chr11 76656888 76657038 -45186818 + B1_Mus2 SINE Alu 1 147 0 3 1169 198 118 0 0 chr11 76657041 76657075 -45186781 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1169 323 202 354 0 chr11 76657319 76657418 -45186438 + B1_Mur4 SINE Alu 3 136 -14 3 1169 600 97 0 0 chr11 76657422 76657515 -45186341 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1169 626 169 87 24 chr11 76657848 76657975 -45185881 + B1_Mur1 SINE Alu 13 147 -2 3 1169 869 199 57 5 chr11 76658251 76658443 -45185413 + ID_B1 SINE B4 2 203 -21 3 1169 183 233 15 77 chr11 76659304 76659369 -45184487 + MIRb SINE MIR 168 228 -40 3 1169 31 82 0 0 chr11 76660080 76660153 -45183703 + GC_rich Low_complexity Low_complexity 1 73 0 3 1169 21 36 0 0 chr11 76660218 76660246 -45183610 + GC_rich Low_complexity Low_complexity 1 28 0 3 1169 252 143 0 0 chr11 76660375 76660417 -45183439 + (CAG)n Simple_repeat Simple_repeat 1 42 0 3 1169 315 0 0 0 chr11 76660762 76660797 -45183059 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1169 2162 212 63 21 chr11 76662260 76662786 -45181070 - RMER15 LTR ERVL 0 575 28 3 1169 242 229 0 0 chr11 76662822 76662870 -45180986 - RMER15 LTR ERVL -527 48 1 3 1169 217 261 10 0 chr11 76663893 76663950 -45179906 - MIRb SINE MIR -87 175 116 3 1169 1450 136 18 0 chr11 76664185 76664406 -45179450 + URR1B DNA MER1_type 1 225 0 3 1169 218 21 19 77 chr11 76664421 76664457 -45179399 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 3 1169 1151 88 0 0 chr11 76664457 76664604 -45179252 - B1_Mus2 SINE Alu 0 147 1 3 1169 218 21 19 77 chr11 76664604 76664619 -45179237 + (TTTTTA)n Simple_repeat Simple_repeat 1 14 0 3 1169 225 310 0 40 chr11 76664680 76664754 -45179102 - ID4 SINE ID -10 73 3 3 1169 225 0 0 0 chr11 76664778 76664803 -45179053 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1169 856 200 18 0 chr11 76665128 76665298 -45178558 + B3 SINE B2 35 207 -9 3 1169 1021 198 13 74 chr11 76665314 76665543 -45178313 + B3 SINE B2 2 216 0 3 1169 474 286 0 0 chr11 76665820 76665946 -45177910 - ID_B1 SINE B4 -3 221 96 3 1169 216 222 169 24 chr11 76666163 76666246 -45177610 - L2a LINE L2 0 3426 3332 3 1169 235 260 65 52 chr11 76666252 76666329 -45177527 + ID4_ SINE ID 3 80 -3 3 1169 538 288 53 70 chr11 76666456 76666684 -45177172 - MTEb LTR MaLR -22 357 134 3 1169 607 262 128 36 chr11 76666684 76666989 -45176867 - L2a LINE L2 -720 2699 2367 3 1169 540 43 0 0 chr11 76667181 76667250 -45176606 - B2_Mm2 SINE B2 -126 69 1 3 1169 185 143 0 45 chr11 76667256 76667300 -45176556 + GA-rich Low_complexity Low_complexity 3 44 0 3 1169 301 290 93 0 chr11 76667330 76667437 -45176419 - L2a LINE L2 -1304 2115 1999 3 1169 506 29 0 14 chr11 76667444 76667513 -45176343 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3 1169 417 238 0 0 chr11 76667515 76667599 -45176257 - ID_B1 SINE B4 -11 213 130 3 1169 1565 31 15 25 chr11 76667796 76667993 -45175863 + B2_Mm2 SINE B2 1 195 0 3 1169 429 329 68 6 chr11 76668635 76668797 -45175059 + LTR16A1 LTR ERVL 273 444 -12 3 1169 1032 231 0 14 chr11 76668818 76669033 -45174823 + B3 SINE B2 1 212 -4 3 1169 944 149 0 33 chr11 76669123 76669276 -45174580 - B1_Mur3 SINE Alu -1 148 1 3 1169 338 182 0 29 chr11 76669394 76669462 -45174394 - B1F SINE Alu -1 148 83 3 1169 212 310 155 0 chr11 76669493 76669564 -45174292 - ID4 SINE ID 0 83 2 3 1169 529 334 57 31 chr11 76669703 76670080 -45173776 - MLT1K LTR MaLR -11 599 192 3 1169 254 317 77 70 chr11 76670939 76671251 -45172605 + ORR1E LTR MaLR 35 348 -11 3 1169 432 0 0 0 chr11 76671275 76671323 -45172533 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 3 1169 789 170 49 21 chr11 76671881 76672025 -45171831 + B1_Mur3 SINE Alu 2 149 0 3 1169 797 205 102 10 chr11 76672037 76672234 -45171622 + B3 SINE B2 2 216 0 3 1169 420 289 14 21 chr11 76672375 76672520 -45171336 - RMER15 LTR ERVL -85 490 347 3 1169 548 296 25 38 chr11 76673222 76673380 -45170476 - B4A SINE B4 -135 157 2 3 1169 909 295 37 0 chr11 76673428 76673669 -45170187 - MER44B DNA MER2_type -200 350 101 3 1169 542 223 14 113 chr11 76673666 76673878 -45169978 - RLTR11B LTR ERVK -8 445 255 3 1169 858 251 20 61 chr11 76673890 76674208 -45169648 - RLTR11B LTR ERVK -264 313 2 3 1169 300 258 144 0 chr11 76674251 76674348 -45169508 + L1MB5 LINE L1 6028 6138 -36 3 1169 27 0 0 0 chr11 76674713 76674740 -45169116 + AT_rich Low_complexity Low_complexity 1 27 0 3 1169 2196 127 63 3 chr11 76675405 76675769 -45168087 - ORR1B1 LTR MaLR -8 386 1 3 1169 3215 31 190 21 chr11 76675802 76676224 -45167632 - MT2_Mm LTR ERVL 0 493 1 3 1169 321 0 0 0 chr11 76676224 76676262 -45167594 - MERVL-int LTR ERVL 0 5485 5448 3 1169 329 125 26 53 chr11 76676262 76676338 -45167518 - ORR1B1-int LTR MaLR -1323 640 567 3 146 48453 16 6 0 chr11 76676338 76681676 -45162180 - MERVL-int LTR ERVL -114 5371 1 3 1170 4272 30 0 18 chr11 76681676 76682178 -45161678 - MT2_Mm LTR ERVL 0 493 1 3 1170 195 42 0 0 chr11 76682184 76682208 -45161648 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1170 574 224 0 0 chr11 76682401 76682508 -45161348 + PB1D10 SINE Alu 1 107 -10 3 1170 807 294 9 0 chr11 76682775 76682989 -45160867 + ID_B1 SINE B4 9 224 0 3 1170 484 262 37 0 chr11 76683059 76683166 -45160690 + B3A SINE B2 39 149 -49 3 1170 369 0 0 0 chr11 76683170 76683211 -45160645 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1170 204 97 0 0 chr11 76683262 76683293 -45160563 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1170 426 256 20 167 chr11 76683499 76683630 -45160226 + L1ME2 LINE L1 5860 5968 -196 3 1170 1411 50 0 32 chr11 76683630 76683817 -45160039 + B2_Mm2 SINE B2 1 181 -14 3 1170 426 256 20 167 chr11 76683817 76683985 -45159871 + L1ME2 LINE L1 5969 6115 -49 3 1170 345 272 26 17 chr11 76683997 76684113 -45159743 + PB1D10 SINE Alu 1 117 0 3 1170 446 258 148 70 chr11 76684233 76684611 -45159245 + L1MB3 LINE L1 5775 6182 -1 4 1170 972 178 181 170 chr11 76684792 76685279 -45158577 + MT2A LTR ERVL 2 493 -40 4 1170 29 70 0 0 chr11 76685310 76685367 -45158489 + AT_rich Low_complexity Low_complexity 1 57 0 4 1170 220 27 26 26 chr11 76685367 76685405 -45158451 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1170 435 235 0 0 chr11 76685505 76685590 -45158266 + PB1D10 SINE Alu 26 110 -7 4 1170 352 201 112 94 chr11 76685622 76685792 -45158064 - L1M4 LINE L1 -1840 4306 4134 4 1170 368 143 0 0 chr11 76685819 76685875 -45157981 - U6 snRNA snRNA -1 106 51 4 1170 242 243 13 67 chr11 76685891 76685966 -45157890 - L1M4 LINE L1 -2069 4077 4007 4 1170 256 318 0 35 chr11 76686663 76686777 -45157079 + Charlie7 DNA MER1_type 2202 2311 -301 4 1170 215 109 53 35 chr11 76686882 76686939 -45156917 + (ATTAG)n Simple_repeat Simple_repeat 1 58 0 4 1170 246 105 0 0 chr11 76687012 76687050 -45156806 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1170 689 149 0 24 chr11 76687708 76687832 -45156024 + B1_Mus2 SINE Alu 14 134 -13 4 1170 211 28 56 0 chr11 76687832 76687868 -45155988 + (CAA)n Simple_repeat Simple_repeat 1 38 0 4 1170 2456 260 34 31 chr11 76688000 76688651 -45155205 - RMER15-int LTR ERVL -2642 2357 1705 4 1170 1371 274 80 10 chr11 76688643 76689041 -45154815 - RMER15-int LTR ERVL -3612 1387 962 4 1170 2853 24 0 0 chr11 76689042 76689370 -45154486 + L1Md_A LINE L1 6255 6582 0 4 1170 468 0 0 0 chr11 76689396 76689448 -45154408 + (TAA)n Simple_repeat Simple_repeat 3 54 0 4 1170 451 235 178 69 chr11 76689503 76689543 -45154313 + B3 SINE B2 2 35 -181 4 1170 671 60 449 15 chr11 76689543 76689679 -45154177 + B2_Mm2 SINE B2 1 195 0 4 1170 451 235 178 69 chr11 76689679 76689812 -45154044 + B3 SINE B2 36 194 -22 4 1170 333 0 0 0 chr11 76689812 76689849 -45154007 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1170 278 279 76 91 chr11 76689849 76689871 -45153985 + B2_Mm2 SINE B2 179 195 0 4 1170 454 136 0 0 chr11 76689887 76689968 -45153888 + B1_Mus2 SINE Alu 67 147 0 4 1170 724 319 60 16 chr11 76690005 76690324 -45153532 - RMER15-int LTR ERVL -4113 886 554 4 1170 358 240 31 0 chr11 76690626 76690722 -45153134 - RMER15 LTR ERVL -70 505 407 4 1170 618 245 70 0 chr11 76691467 76691610 -45152246 + B4A SINE B4 80 232 -60 4 1170 1133 94 82 0 chr11 76691665 76691836 -45152020 - B2_Mm2 SINE B2 -7 188 4 4 1170 1295 72 21 37 chr11 76692546 76692734 -45151122 - B2_Mm2 SINE B2 -10 185 1 4 1170 574 240 216 11 chr11 76692762 76692947 -45150909 + ID_B1 SINE B4 2 224 0 4 1170 442 171 12 12 chr11 76693354 76693437 -45150419 - ID4 SINE ID 0 83 1 4 1170 497 276 62 139 chr11 76694015 76694525 -45149331 - RMER20B LTR ERVK -66 561 30 4 1170 839 276 50 4 chr11 76694597 76694877 -45148979 + L1M4 LINE L1 4321 4613 -1533 4 1170 308 156 0 0 chr11 76694932 76694996 -45148860 + RMER4B LTR ERVK 17 80 -386 4 1170 1220 48 7 0 chr11 76694998 76695144 -45148712 + B1_Mus1 SINE Alu 2 148 0 4 1170 271 91 55 0 chr11 76695145 76695200 -45148656 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 4 1170 942 237 78 109 chr11 76695200 76695651 -45148205 + RMER4B LTR ERVK 72 611 0 4 1170 425 170 22 11 chr11 76695663 76695752 -45148104 + L1M4 LINE L1 4615 4704 -1442 4 1170 654 271 121 29 chr11 76695970 76696066 -45147790 + L1M4 LINE L1 4781 4886 -1260 4 1170 901 178 79 88 chr11 76696066 76696294 -45147562 - URR1A DNA MER1_type 0 226 1 4 1170 654 271 121 29 chr11 76696294 76696512 -45147344 + L1M4 LINE L1 4887 5124 -1022 4 1170 330 343 44 15 chr11 76696517 76696653 -45147203 + ID_B1 SINE B4 84 223 -1 4 1170 248 0 31 0 chr11 76696812 76696844 -45147012 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1170 460 231 37 0 chr11 76696845 76696953 -45146903 - B3A SINE B2 -86 112 1 4 1170 588 186 228 30 chr11 76696998 76697264 -45146592 - RMER4B LTR ERVK -2 583 265 4 1170 598 265 170 117 chr11 76697256 76697632 -45146224 + MLT2B2 LTR ERVL 113 508 -7 4 1170 180 0 0 0 chr11 76697848 76697868 -45145988 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1170 531 251 154 45 chr11 76698230 76698497 -45145359 - MER21B LTR ERV1 -57 806 511 4 1170 1256 41 0 0 chr11 76698511 76698658 -45145198 - B1_Mm SINE Alu 0 147 1 4 1170 396 279 108 0 chr11 76698723 76698834 -45145022 + B1F1 SINE Alu 6 128 -21 4 1170 757 220 83 0 chr11 76698836 76699004 -45144852 + B3A SINE B2 1 182 -16 4 1170 383 281 105 28 chr11 76699077 76699220 -45144636 + RSINE1 SINE B4 2 155 -10 4 1170 344 223 14 0 chr11 76699257 76699349 -45144507 + ID4 SINE ID 12 104 -48 4 1170 423 238 93 19 chr11 76699394 76699501 -45144355 - MER21B LTR ERV1 -454 409 295 4 1170 1994 190 158 42 chr11 76699518 76699772 -45144084 + RMER20B LTR ERVK 21 330 -297 4 1170 234 0 0 0 chr11 76699772 76699798 -45144058 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1170 1994 190 158 42 chr11 76699798 76700087 -45143769 + RMER20B LTR ERVK 331 627 0 4 1170 750 299 53 36 chr11 76700087 76700368 -45143488 - MER21B LTR ERV1 -564 299 14 4 1170 256 265 128 97 chr11 76700333 76700559 -45143297 + Charlie25 DNA MER1_type 1032 1264 -1260 4 1170 265 200 0 0 chr11 76700603 76700658 -45143198 - B3 SINE B2 -13 203 149 4 1170 560 287 7 0 chr11 76700851 76700987 -45142869 + ID_B1 SINE B4 81 217 -7 4 1170 324 273 0 0 chr11 76701030 76701107 -45142749 + ID4 SINE ID 7 83 0 4 1170 388 208 208 0 chr11 76701176 76701272 -45142584 - PB1D10 SINE Alu 0 117 2 4 1170 1122 189 14 14 chr11 76701283 76701498 -45142358 - B3 SINE B2 -1 215 1 4 1170 370 227 138 62 chr11 76701804 76701964 -45141892 - RMER20B LTR ERVK -323 304 133 4 1170 892 253 199 0 chr11 76702190 76702486 -45141370 + MTD LTR MaLR 19 373 -46 4 1170 195 42 0 0 chr11 76702641 76702665 -45141191 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1170 865 247 140 40 chr11 76702980 76703381 -45140475 - RLTR28B LTR ERVL -38 443 3 4 1170 283 45 22 22 chr11 76703995 76704041 -45139815 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1170 418 234 0 0 chr11 76704060 76704137 -45139719 - RSINE1 SINE B4 -63 102 26 4 1170 315 0 0 0 chr11 76704155 76704190 -45139666 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1170 299 260 41 0 chr11 76704289 76704362 -45139494 - ID4 SINE ID -6 77 2 4 1170 216 0 0 0 chr11 76705133 76705157 -45138699 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1170 404 292 17 34 chr11 76705157 76705274 -45138582 - PB1D10 SINE Alu -1 116 2 4 1170 423 0 0 0 chr11 76705294 76705341 -45138515 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1170 431 275 90 14 chr11 76706143 76706287 -45137569 - MER63B DNA AcHobo -10 426 272 4 1170 260 276 214 6 chr11 76706811 76706979 -45136877 - LTR31 LTR ERV1 -10 609 407 4 1170 463 276 25 32 chr11 76707437 76707594 -45136262 - Arthur1A DNA Tip100 -2 175 20 4 1170 262 254 63 0 chr11 76708036 76708099 -45135757 + PB1D10 SINE Alu 41 107 -10 4 1170 709 329 31 48 chr11 76708111 76708333 -45135523 + B4A SINE B4 1 223 -69 4 1170 798 209 0 20 chr11 76708333 76708484 -45135372 + B1_Mur1 SINE Alu 1 148 -1 4 1170 709 329 31 48 chr11 76708484 76708552 -45135304 + B4A SINE B4 224 286 -6 4 1170 210 297 12 86 chr11 76708747 76708828 -45135028 - ID4 SINE ID 0 83 9 4 1170 254 29 29 0 chr11 76709139 76709174 -45134682 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1170 301 282 63 49 chr11 76709180 76709458 -45134398 - RLTR11A2 LTR ERVK 0 528 199 4 1170 1134 48 7 14 chr11 76709613 76709760 -45134096 - B1_Mus1 SINE Alu -1 147 2 4 1170 2143 177 63 66 chr11 76709761 76710562 -45133294 - RMER19B LTR ERVK -16 886 1 4 1170 385 272 32 45 chr11 76710562 76710716 -45133140 - RLTR11A2 LTR ERVK -375 152 1 4 1170 294 98 0 0 chr11 76710743 76710794 -45133062 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1170 234 62 0 0 chr11 76710796 76710828 -45133028 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1170 1161 207 14 9 chr11 76711145 76711360 -45132496 - B3 SINE B2 0 216 1 4 1170 410 254 57 71 chr11 76711631 76711771 -45132085 - B1F SINE Alu -8 141 4 4 1170 302 225 0 24 chr11 76712298 76712380 -45131476 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1170 229 245 104 78 chr11 76713261 76713376 -45130480 - L1ME2z LINE L1 -9 6435 6318 4 1170 342 0 0 0 chr11 76713422 76713460 -45130396 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1170 231 310 29 39 chr11 76713460 76713564 -45130292 - L1MC4 LINE L1 -140 7902 7800 4 1170 304 280 216 0 chr11 76713825 76713950 -45129906 + LTR16C LTR ERVL 330 481 -8 4 1170 773 249 11 24 chr11 76713970 76714173 -45129683 - B3A SINE B2 -10 185 2 4 1170 382 331 42 24 chr11 76714350 76714517 -45129339 - MIRb SINE MIR -26 242 73 4 1170 650 241 22 7 chr11 76714560 76714698 -45129158 + ID_B1 SINE B4 84 223 -1 4 1170 440 205 26 0 chr11 76714721 76714799 -45129057 + ID4 SINE ID 4 83 0 4 1170 220 295 47 82 chr11 76714928 76715013 -45128843 - RSINE1 SINE B4 -5 160 79 4 1170 212 67 37 74 chr11 76715828 76715909 -45127947 + T-rich Low_complexity Low_complexity 3 80 0 4 1170 998 115 0 57 chr11 76715911 76716068 -45127788 - B1_Mur4 SINE Alu 0 150 3 4 1170 249 176 38 38 chr11 76716171 76716224 -45127632 - ID4 SINE ID -5 78 26 4 1170 608 245 57 14 chr11 76716322 76716463 -45127393 - RSINE1 SINE B4 -18 147 1 4 1170 182 277 0 0 chr11 76716821 76716868 -45126988 + MIRb SINE MIR 48 94 -174 4 1170 594 41 0 0 chr11 76717123 76717196 -45126660 + (TAG)n Simple_repeat Simple_repeat 3 75 0 4 1170 926 269 0 0 chr11 76717448 76717656 -45126200 + B3 SINE B2 2 209 -7 4 1170 26 30 0 0 chr11 76718180 76718213 -45125643 + AT_rich Low_complexity Low_complexity 1 33 0 4 1170 556 304 71 16 chr11 76718682 76718936 -45124920 + B4A SINE B4 1 268 -24 4 1170 333 277 58 45 chr11 76719144 76719299 -45124557 + B4 SINE B4 67 223 -69 4 1170 744 152 61 0 chr11 76719168 76719300 -45124556 + B1_Mur2 SINE Alu 9 148 -1 4 1170 1186 68 0 0 chr11 76719500 76719646 -45124210 - B1_Mus1 SINE Alu -2 146 1 4 1170 261 323 75 0 chr11 76719964 76720097 -45123759 + MER5B DNA MER1_type 4 146 -32 4 1170 219 146 0 0 chr11 76720165 76720206 -45123650 + PB1D7 SINE Alu 17 57 -63 5 1170 306 261 18 20 chr11 76720244 76720372 -45123484 - L1M5 LINE L1 -465 5868 5738 5 1170 275 274 0 0 chr11 76720779 76720841 -45123015 - PB1 SINE Alu -27 100 39 5 1170 787 71 0 9 chr11 76720883 76720997 -45122859 - B1_Mm SINE Alu 0 147 35 5 1170 400 215 27 45 chr11 76721106 76721218 -45122638 + PB1D10 SINE Alu 1 110 -7 5 1170 1688 21 0 0 chr11 76721566 76721753 -45122103 - B2_Mm1a SINE B2 -6 187 1 5 1170 1165 55 7 0 chr11 76722058 76722203 -45121653 - B1_Mus2 SINE Alu -1 146 1 5 1170 1260 41 0 0 chr11 76722696 76722843 -45121013 - B1_Mm SINE Alu 0 147 1 5 1170 679 235 37 0 chr11 76722852 76722988 -45120868 - B1_Mur1 SINE Alu -8 141 1 5 1170 1074 217 14 14 chr11 76723070 76723285 -45120571 - B3 SINE B2 0 216 2 5 1170 387 0 0 0 chr11 76723397 76723440 -45120416 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1170 378 294 0 9 chr11 76723988 76724098 -45119758 + PB1D10 SINE Alu 1 109 -8 5 1170 189 0 0 0 chr11 76724098 76724119 -45119737 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1170 889 167 0 14 chr11 76724276 76724422 -45119434 + B1_Mur1 SINE Alu 1 144 -5 5 1170 232 160 19 39 chr11 76724753 76724805 -45119051 - B3 SINE B2 -15 201 151 5 1170 224 163 20 0 chr11 76725185 76725234 -45118622 + A-rich Low_complexity Low_complexity 2 51 0 5 1170 453 159 11 79 chr11 76726219 76726308 -45117548 + ID4_ SINE ID 1 83 0 5 1170 818 85 17 8 chr11 76726599 76726717 -45117139 + PB1D9 SINE Alu 2 120 0 5 1170 548 159 193 9 chr11 76727039 76727153 -45116703 + B1_Mur4 SINE Alu 3 137 -13 5 1170 243 304 35 23 chr11 76727248 76727344 -45116512 + MIRb SINE MIR 42 141 -127 5 1170 242 262 16 16 chr11 76727620 76727682 -45116174 + ID4_ SINE ID 1 62 -21 5 1170 364 301 26 0 chr11 76727781 76727894 -45115962 + PB1D10 SINE Alu 2 117 0 5 1170 496 213 42 6 chr11 76728318 76728483 -45115373 + GA-rich Low_complexity Low_complexity 5 175 0 5 1170 539 273 36 78 chr11 76728491 76728658 -45115198 + RSINE1 SINE B4 3 162 -3 5 1170 567 0 0 0 chr11 76728669 76728732 -45115124 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1170 202 51 0 71 chr11 76729026 76729068 -45114788 + (TGGGGG)n Simple_repeat Simple_repeat 2 40 0 5 1170 347 277 10 0 chr11 76730014 76730115 -45113741 - Charlie18a DNA MER1_type -172 170 69 5 1170 198 0 0 0 chr11 76730350 76730372 -45113484 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1170 26 0 0 0 chr11 76731461 76731487 -45112369 + AT_rich Low_complexity Low_complexity 1 26 0 5 1170 444 37 0 0 chr11 76731488 76731542 -45112314 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1170 711 233 6 36 chr11 76731546 76731711 -45112145 - B3A SINE B2 -37 161 2 5 1170 1094 103 84 22 chr11 76731783 76731962 -45111894 - B2_Mm2 SINE B2 -5 190 1 5 1170 613 206 59 0 chr11 76732118 76732254 -45111602 + ID_B1 SINE B4 78 221 -3 5 1170 459 0 0 0 chr11 76732998 76733049 -45110807 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1170 210 231 132 21 chr11 76733408 76733510 -45110346 - MIRm SINE MIR -99 169 58 5 1170 262 213 18 175 chr11 76733987 76734101 -45109755 + ID4 SINE ID 12 107 -45 5 1170 250 87 43 0 chr11 76734140 76734186 -45109670 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1170 560 211 35 0 chr11 76734206 76734320 -45109536 - RSINE1 SINE B4 -43 122 5 5 1170 354 329 78 0 chr11 76734878 76735045 -45108811 - MIRc SINE MIR -11 257 78 5 1170 321 26 0 0 chr11 76735307 76735345 -45108511 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 1170 1394 77 11 0 chr11 76735912 76736093 -45107763 - B2_Mm1t SINE B2 -9 184 2 5 1170 1212 61 0 7 chr11 76736494 76736642 -45107214 + B1_Mus1 SINE Alu 2 148 0 5 1170 261 0 0 0 chr11 76737245 76737274 -45106582 + (TCTG)n Simple_repeat Simple_repeat 3 31 0 5 1170 334 239 160 42 chr11 76737468 76737612 -45106244 + MIR SINE MIR 31 191 -71 5 1170 414 280 10 0 chr11 76737820 76737920 -45105936 - PB1D10 SINE Alu -6 111 11 5 1170 211 204 93 0 chr11 76738006 76738060 -45105796 - ID2 SINE ID -20 63 5 5 1170 812 108 8 0 chr11 76738153 76738283 -45105573 + (TCTCCC)n Simple_repeat Simple_repeat 3 133 0 5 1170 203 114 0 54 chr11 76738842 76738879 -45104977 + (CACCC)n Simple_repeat Simple_repeat 3 37 0 5 1170 915 236 79 57 chr11 76739023 76739302 -45104554 - B4 SINE B4 -6 286 2 5 1170 550 193 159 42 chr11 76739520 76739708 -45104148 + MTD LTR MaLR 1 210 -211 5 1170 260 174 0 0 chr11 76739708 76739754 -45104102 + B3 SINE B2 2 47 -169 5 1170 1372 114 37 14 chr11 76739755 76739969 -45103887 - Lx2 LINE L1 0 6997 6779 5 1170 7363 102 37 2 chr11 76739969 76741287 -45102569 - Lx2 LINE L1 -350 6647 5277 5 1170 5672 48 29 10 chr11 76741284 76742056 -45101800 - MusHAL1 LINE L1 -1743 969 184 5 1170 1441 153 54 46 chr11 76742075 76742503 -45101353 - RLTR1B LTR ERV1 -76 436 1 5 1170 5036 54 24 39 chr11 76742503 76743178 -45100678 - RLTR1B-int LTR ERV1 0 3299 2635 5 1170 11347 124 35 75 chr11 76743175 76745371 -45098485 - RLTR1B-int LTR ERV1 -1190 2109 1 5 1170 1178 63 0 0 chr11 76745371 76745529 -45098327 - RLTR1B LTR ERV1 0 512 355 5 1170 624 148 50 19 chr11 76745529 76745688 -45098168 - MusHAL1 LINE L1 -2514 198 35 5 1170 231 229 51 25 chr11 76745673 76745730 -45098126 - L1_Mur2 LINE L1 -4514 1363 1305 5 1170 1184 68 0 7 chr11 76745730 76745879 -45097977 - B1_Mus1 SINE Alu 0 148 1 5 1170 4003 112 13 91 chr11 76745879 76746127 -45097729 - L1VL4 LINE L1 -5330 1005 825 5 1170 1212 61 0 0 chr11 76746127 76746274 -45097582 - B1_Mm SINE Alu 0 147 1 5 1170 4003 110 19 24 chr11 76746274 76746815 -45097041 - L1VL4 LINE L1 -5534 824 282 5 1170 589 211 135 12 chr11 76746830 76746993 -45096863 + B3 SINE B2 34 216 0 5 1170 595 279 114 5 chr11 76746995 76747197 -45096659 + MTD LTR MaLR 196 419 0 5 1170 387 0 0 0 chr11 76747417 76747460 -45096396 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1170 1235 48 0 0 chr11 76747465 76747612 -45096244 - B1_Mus1 SINE Alu 0 148 2 5 1170 344 269 32 56 chr11 76747662 76747788 -45096068 + MER3 DNA MER1_type 2 124 -85 5 1170 249 261 31 0 chr11 76747809 76747874 -45095982 - ID4_ SINE ID -14 69 3 5 1170 25 0 0 0 chr11 76748900 76748925 -45094931 + AT_rich Low_complexity Low_complexity 1 25 0 5 1170 337 219 0 0 chr11 76748929 76748993 -45094863 + B3A SINE B2 1 64 -134 5 1170 276 237 12 62 chr11 76748993 76749010 -45094846 + B4 SINE B4 1 77 -215 5 1170 405 0 0 0 chr11 76749216 76749261 -45094595 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1170 228 143 0 0 chr11 76749261 76749303 -45094553 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1170 23 0 0 0 chr11 76749310 76749333 -45094523 + AT_rich Low_complexity Low_complexity 1 23 0 5 1170 435 233 58 0 chr11 76749342 76749445 -45094411 - B3A SINE B2 -81 117 9 5 1170 740 143 30 0 chr11 76749591 76749724 -45094132 + B1_Mus2 SINE Alu 10 146 -1 5 1170 837 261 113 27 chr11 76749938 76750194 -45093662 + B4A SINE B4 15 292 0 5 1170 616 250 116 28 chr11 76750364 76750403 -45093453 - B3A SINE B2 0 198 164 5 1170 312 27 0 0 chr11 76750403 76750440 -45093416 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1170 616 250 116 28 chr11 76750440 76750581 -45093275 - B3A SINE B2 -35 163 2 5 1170 21 0 0 0 chr11 76750779 76750800 -45093056 + AT_rich Low_complexity Low_complexity 1 21 0 5 1170 726 257 24 18 chr11 76750804 76750974 -45092882 + B3A SINE B2 1 171 -27 5 1170 198 103 0 0 chr11 76750974 76751003 -45092853 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1170 658 271 40 0 chr11 76751010 76751209 -45092647 + MER2 DNA MER2_type 86 292 -53 5 1170 488 198 10 0 chr11 76751645 76751741 -45092115 + B1_Mur1 SINE Alu 44 140 -9 5 1170 230 0 33 0 chr11 76751747 76751777 -45092079 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1170 237 268 0 0 chr11 76751778 76751862 -45091994 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 1170 248 282 14 14 chr11 76751901 76751973 -45091883 - B4A SINE B4 -2 290 219 5 1170 690 256 0 0 chr11 76752008 76752141 -45091715 - RSINE1 SINE B4 -2 163 31 5 1170 240 231 175 25 chr11 76752148 76752228 -45091628 - B4 SINE B4 -48 244 153 5 1170 423 0 0 0 chr11 76752303 76752350 -45091506 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 5 1170 859 148 15 15 chr11 76752350 76752487 -45091369 - B1_Mur4 SINE Alu -13 137 1 5 1170 359 291 9 18 chr11 76752578 76752690 -45091166 + PB1D10 SINE Alu 1 111 -6 5 1170 1119 102 0 0 chr11 76752701 76752848 -45091008 + B1_Mus2 SINE Alu 1 147 0 5 1170 315 0 0 0 chr11 76752851 76752886 -45090970 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 5 1170 2086 137 28 196 chr11 76753774 76753969 -45089887 + MTC LTR MaLR 5 209 -212 5 1170 1270 34 0 0 chr11 76753969 76754116 -45089740 + B1_Mus2 SINE Alu 1 147 0 5 1170 2086 137 28 196 chr11 76754116 76754421 -45089435 + MTC LTR MaLR 210 421 0 5 1170 1233 120 109 5 chr11 76754516 76754717 -45089139 - URR1A DNA MER1_type 0 226 5 5 1170 242 61 0 0 chr11 76754747 76754780 -45089076 - MT2B LTR ERVL -568 33 1 5 1170 1042 228 186 9 chr11 76755235 76755558 -45088298 - RCHARR1 DNA MER1_type 0 974 595 5 1170 846 158 215 0 chr11 76755677 76755854 -45088002 + B3 SINE B2 2 216 0 5 1170 216 208 189 0 chr11 76755937 76755990 -45087866 + PB1D9 SINE Alu 1 63 -57 5 1170 1788 242 38 18 chr11 76756000 76756501 -45087355 - RCHARR1 DNA MER1_type -395 579 69 5 1170 198 0 0 0 chr11 76756521 76756543 -45087313 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1170 1209 41 7 0 chr11 76756543 76756689 -45087167 - B1_Mus2 SINE Alu 0 147 1 5 1170 1082 173 71 0 chr11 76756699 76756896 -45086960 - B3 SINE B2 -4 212 2 5 1170 251 259 0 17 chr11 76757489 76757548 -45086308 - ID SINE ID -142 82 25 5 1170 265 237 0 17 chr11 76757496 76757556 -45086300 - tRNA-Ala-GCY_ tRNA tRNA -7 68 10 6 1170 547 242 87 41 chr11 76757689 76757861 -45085995 - B3A SINE B2 -18 180 1 6 1170 279 79 0 0 chr11 76758013 76758051 -45085805 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6 1170 324 0 0 0 chr11 76758441 76758477 -45085379 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1170 198 0 0 0 chr11 76758502 76758524 -45085332 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1170 386 309 179 10 chr11 76761690 76761987 -45081869 + Kanga2_a DNA Tc2 274 620 -268 6 1170 670 215 22 0 chr11 76762043 76762178 -45081678 - ID_B1 SINE B4 -84 140 3 6 1170 1507 48 16 21 chr11 76762506 76762696 -45081160 - B2_Mm2 SINE B2 -6 189 1 6 1170 576 273 0 1 chr11 76762934 76763062 -45080794 - B1F SINE Alu -21 128 2 6 1170 335 208 17 122 chr11 76762959 76763074 -45080782 - MT2B2 LTR ERVL -327 257 155 6 1170 406 256 211 0 chr11 76763175 76763331 -45080525 + ID_B1 SINE B4 36 224 0 6 1170 1198 56 0 0 chr11 76763980 76764124 -45079732 - B1_Mm SINE Alu 0 147 4 6 1170 776 187 205 0 chr11 76764928 76765099 -45078757 + B3 SINE B2 1 206 -10 6 1170 533 278 128 5 chr11 76765143 76765331 -45078525 + B3 SINE B2 2 212 -4 6 1170 274 324 0 0 chr11 76765348 76765422 -45078434 + ID4 SINE ID 6 79 -4 6 1170 277 329 0 0 chr11 76765592 76765662 -45078194 + ID4_ SINE ID 1 70 -13 6 1170 626 232 157 22 chr11 76765691 76765876 -45077980 + ID_B1 SINE B4 5 214 -10 6 1170 691 174 0 14 chr11 76766149 76766295 -45077561 + CT-rich Low_complexity Low_complexity 4 147 0 6 1170 817 124 80 7 chr11 76766295 76766433 -45077423 - B1_Mur3 SINE Alu 0 149 2 6 1170 1174 75 0 0 chr11 76766528 76766674 -45077182 + B1_Mus2 SINE Alu 2 147 0 6 1170 978 132 13 0 chr11 76766697 76766856 -45077000 + B2_Mm2 SINE B2 1 161 -34 6 1170 315 0 0 0 chr11 76766856 76766891 -45076965 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 6 1170 305 233 174 0 chr11 76768225 76768311 -45075545 + ID_B1 SINE B4 124 224 0 6 1170 180 333 51 0 chr11 76768450 76768528 -45075328 - L2c LINE L2 -27 3360 3279 6 1170 256 309 173 0 chr11 76769587 76769697 -45074159 + RSINE1 SINE B4 2 130 -35 6 1170 725 220 129 10 chr11 76769792 76769985 -45073871 - B3 SINE B2 0 216 1 6 1170 1068 162 126 0 chr11 76770761 76770952 -45072904 + B3 SINE B2 1 215 -1 6 1170 872 118 0 14 chr11 76770968 76771106 -45072750 + B1_Mus2 SINE Alu 10 145 -2 6 1170 259 310 0 0 chr11 76771139 76771197 -45072659 + ID4_ SINE ID 2 59 -24 6 1170 527 224 227 11 chr11 76771322 76771498 -45072358 - B3 SINE B2 -2 214 1 6 1170 603 257 52 12 chr11 76771525 76771698 -45072158 - B3A SINE B2 -18 180 1 6 1170 349 277 99 0 chr11 76772022 76772123 -45071733 + PB1D10 SINE Alu 1 111 -6 6 1170 306 0 0 0 chr11 76772123 76772157 -45071699 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1170 300 341 124 11 chr11 76772206 76772384 -45071472 - L2c LINE L2 -620 2799 2602 6 1170 416 293 88 13 chr11 76773074 76773233 -45070623 - RLTR17 LTR ERVK -351 341 171 6 1170 370 288 26 18 chr11 76773267 76773380 -45070476 + PB1D10 SINE Alu 1 114 -3 6 1170 686 167 83 0 chr11 76773907 76774027 -45069829 - B3 SINE B2 -86 130 1 6 1170 341 265 55 79 chr11 76774330 76774457 -45069399 - LTR86A1 LTR ERVL -379 134 11 6 1170 236 322 76 8 chr11 76774567 76774686 -45069170 - L2a LINE L2 -37 3389 3263 6 1170 461 224 9 61 chr11 76775159 76775273 -45068583 - PB1D9 SINE Alu -1 119 12 6 1170 1161 68 0 33 chr11 76775324 76775477 -45068379 - B1_Mus1 SINE Alu 0 148 1 6 1170 394 282 153 14 chr11 76775699 76775843 -45068013 - RSINE1 SINE B4 0 165 2 6 1170 559 294 97 49 chr11 76776548 76776761 -45067095 + L1ME3 LINE L1 5806 6019 -143 6 1170 1670 31 0 0 chr11 76776761 76776952 -45066904 - B2_Mm1a SINE B2 -2 191 1 6 1170 559 294 97 49 chr11 76776952 76777046 -45066810 + L1ME3 LINE L1 6020 6128 -34 6 1170 279 54 0 0 chr11 76777333 76777370 -45066486 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1170 2547 62 3 58 chr11 76777542 76777884 -45065972 - ORR1A2 LTR MaLR -4 323 1 6 1170 1483 205 73 44 chr11 76777884 76778149 -45065707 - ORR1C2 LTR MaLR -104 280 1 6 1170 21 0 0 0 chr11 76778201 76778222 -45065634 + AT_rich Low_complexity Low_complexity 1 21 0 6 1170 456 318 92 7 chr11 76778348 76778500 -45065356 + B3A SINE B2 26 190 -8 6 1170 321 235 29 0 chr11 76778522 76778590 -45065266 + ID4 SINE ID 1 70 -13 6 1170 731 266 53 11 chr11 76778684 76778874 -45064982 + B3 SINE B2 19 216 0 6 1170 952 132 7 20 chr11 76778930 76779077 -45064779 - B1_Mur2 SINE Alu -1 148 4 6 1170 804 183 60 124 chr11 76781077 76781295 -45062561 + B3A SINE B2 7 210 -6 6 1170 409 207 45 11 chr11 76781415 76781503 -45062353 + ID_B1 SINE B4 122 212 -12 6 1170 237 65 0 0 chr11 76781516 76781547 -45062309 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1170 291 280 20 20 chr11 76781560 76781662 -45062194 - RMER12 LTR ERVK -471 851 750 6 1170 624 239 51 22 chr11 76781747 76781884 -45061972 + B1_Mur2 SINE Alu 9 149 0 6 1170 453 250 11 0 chr11 76783651 76783739 -45060117 + B1F SINE Alu 2 90 -59 6 1170 307 243 41 83 chr11 76784700 76784821 -45059035 - RSINE1 SINE B4 -49 116 1 6 1170 489 234 30 74 chr11 76784871 76785046 -45058810 + B3A SINE B2 3 179 -37 6 1170 1233 61 0 0 chr11 76785065 76785212 -45058644 + B1_Mus2 SINE Alu 1 147 0 6 1170 501 30 0 0 chr11 76785935 76786001 -45057855 + L1_Mus2 LINE L1 6501 6566 0 6 1170 1275 41 0 0 chr11 76786200 76786347 -45057509 - B1_Mm SINE Alu 0 147 1 6 1170 1369 85 5 5 chr11 76787221 76787411 -45056445 - B2_Mm2 SINE B2 -5 190 1 6 1170 664 189 98 0 chr11 76787592 76787735 -45056121 + U1 snRNA snRNA 6 162 -3 6 1170 328 274 63 0 chr11 76789042 76789137 -45054719 + ID_B1 SINE B4 90 190 -34 6 1170 1009 172 16 32 chr11 76789360 76789546 -45054310 + ORR1D1 LTR MaLR 1 183 -191 6 1170 207 100 0 0 chr11 76789546 76789576 -45054280 + (TTCTCC)n Simple_repeat Simple_repeat 2 31 0 6 1170 1080 164 61 5 chr11 76789606 76789827 -45054029 + ORR1D1 LTR MaLR 97 374 0 6 1170 219 191 159 0 chr11 76790347 76790410 -45053446 - PB1D10 SINE Alu -21 96 24 6 1170 1261 54 0 0 chr11 76790619 76790766 -45053090 - B1_Mus2 SINE Alu 0 147 1 6 1170 22 0 0 0 chr11 76790808 76790830 -45053026 + AT_rich Low_complexity Low_complexity 1 22 0 6 1170 1315 105 10 5 chr11 76790843 76791035 -45052821 - B2_Mm1t SINE B2 0 193 1 6 1170 351 0 0 0 chr11 76793134 76793173 -45050683 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1170 589 238 60 13 chr11 76793611 76793760 -45050096 + RSINE1 SINE B4 2 157 -8 6 1170 652 189 16 16 chr11 76794163 76794287 -45049569 - B1F2 SINE Alu -2 147 24 6 1170 327 267 65 19 chr11 76794674 76794781 -45049075 - L1MC LINE L1 -2226 5656 5545 6 1170 36 40 0 0 chr11 76795014 76795064 -45048792 + AT_rich Low_complexity Low_complexity 1 50 0 6 1170 549 279 25 59 chr11 76795249 76795500 -45048356 + B4A SINE B4 4 292 0 6 1170 779 219 20 87 chr11 76795569 76795764 -45048092 - B3A SINE B2 -11 184 3 6 1170 328 265 137 0 chr11 76796134 76796236 -45047620 - PB1D10 SINE Alu -1 116 1 6 1170 25 31 0 0 chr11 76796260 76796292 -45047564 + AT_rich Low_complexity Low_complexity 1 32 0 6 1170 602 293 25 55 chr11 76796371 76796573 -45047283 + B3A SINE B2 1 196 -2 6 1170 1255 41 0 0 chr11 76796590 76796736 -45047120 + B1_Mm SINE Alu 2 147 0 6 1170 488 245 20 0 chr11 76797691 76797789 -45046067 - PB1D7 SINE Alu -8 112 13 6 1170 246 250 0 89 chr11 76797890 76797969 -45045887 + MER34A LTR ERV1 59 130 -441 6 1170 593 219 144 0 chr11 76798216 76798362 -45045494 - B4A SINE B4 -124 168 2 6 1170 227 274 6 206 chr11 76798363 76798471 -45045385 + Charlie1a DNA MER1_type 1319 1396 -59 6 1170 888 263 15 0 chr11 76798471 76798676 -45045180 - B3 SINE B2 -5 211 4 6 1170 227 274 6 206 chr11 76798676 76798737 -45045119 + Charlie1a DNA MER1_type 1397 1454 -1 6 1170 707 222 14 7 chr11 76798856 76799001 -45044855 - ID_B1 SINE B4 0 224 79 6 1170 226 299 43 65 chr11 76799768 76799861 -45043995 + MIRc SINE MIR 112 202 -66 6 1170 399 247 53 11 chr11 76801557 76801651 -45042205 + B1F SINE Alu 40 137 -12 6 1170 252 0 0 0 chr11 76801651 76801679 -45042177 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1170 1129 73 0 0 chr11 76801692 76801829 -45042027 + B1_Mus2 SINE Alu 1 137 -10 6 1170 236 123 131 0 chr11 76801840 76801894 -45041962 + B1_Mur1 SINE Alu 68 148 -1 6 1170 393 221 31 10 chr11 76802125 76802221 -45041635 + RSINE1 SINE B4 4 101 -64 6 1170 661 212 63 62 chr11 76802334 76802479 -45041377 + B1_Mur2 SINE Alu 3 149 0 6 1170 274 293 83 125 chr11 76802479 76802494 -45041362 + B4A SINE B4 127 240 -52 6 1170 688 239 4 9 chr11 76802614 76802763 -45041093 + ID_B1 SINE B4 78 219 -73 6 1170 342 0 0 0 chr11 76803512 76803550 -45040306 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1170 207 194 0 0 chr11 76803550 76803586 -45040270 + (CATA)n Simple_repeat Simple_repeat 2 37 0 6 1170 255 272 10 107 chr11 76803592 76803695 -45040161 + ID_B1 SINE B4 86 178 -46 7 1170 387 290 20 46 chr11 76803703 76803787 -45040069 + B4A SINE B4 132 213 -79 7 1170 1196 68 0 0 chr11 76803787 76803934 -45039922 + B1_Mus2 SINE Alu 1 147 0 7 1170 387 290 20 46 chr11 76803934 76804001 -45039855 + B4A SINE B4 214 278 -14 7 1170 339 264 43 11 chr11 76804174 76804266 -45039590 + PB1D7 SINE Alu 11 105 -15 7 1170 414 184 175 44 chr11 76804260 76804374 -45039482 + B1_Mur2 SINE Alu 21 149 0 7 1170 978 76 0 0 chr11 76804984 76805116 -45038740 + (TCC)n Simple_repeat Simple_repeat 2 133 0 7 1170 309 314 111 56 chr11 76805471 76805741 -45038115 + L2a LINE L2 3051 3335 -91 7 1170 193 256 0 0 chr11 76806133 76806176 -45037680 + MIRm SINE MIR 97 139 -137 7 1170 1254 148 58 10 chr11 76807092 76807297 -45036559 - B3 SINE B2 -1 215 1 7 1170 525 237 59 37 chr11 76807333 76807469 -45036387 + B3A SINE B2 2 140 -58 7 1170 375 23 0 0 chr11 76807505 76807549 -45036307 + (TATAA)n Simple_repeat Simple_repeat 5 48 0 7 1170 625 153 8 8 chr11 76807584 76807597 -45036259 + polypurine Low_complexity Low_complexity 3 15 0 7 1170 1294 56 6 11 chr11 76807597 76807778 -45036078 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1170 625 153 8 8 chr11 76807778 76807889 -45035967 + GA-rich Low_complexity Low_complexity 16 127 0 7 1170 414 0 0 0 chr11 76807887 76807933 -45035923 + (TAG)n Simple_repeat Simple_repeat 2 47 0 7 1170 1055 92 43 0 chr11 76807933 76808074 -45035782 + B1_Mus2 SINE Alu 1 147 0 7 1171 383 299 35 120 chr11 76808407 76808723 -45035133 + B4A SINE B4 2 290 -2 7 1171 234 0 0 0 chr11 76808765 76808791 -45035065 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1171 269 293 1 95 chr11 76808828 76808943 -45034913 + PB1D10 SINE Alu 19 121 -28 7 1171 21 0 0 0 chr11 76811272 76811293 -45032563 + AT_rich Low_complexity Low_complexity 1 21 0 7 1171 351 65 0 0 chr11 76811349 76811395 -45032461 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1171 210 37 0 0 chr11 76811835 76811862 -45031994 + (CCCTG)n Simple_repeat Simple_repeat 5 31 0 7 1171 204 200 0 0 chr11 76812192 76812237 -45031619 + T-rich Low_complexity Low_complexity 1 45 0 7 1171 261 315 0 27 chr11 76813157 76813232 -45030624 - ID4_ SINE ID 0 83 11 7 1171 285 291 63 0 chr11 76813364 76813443 -45030413 + ID_B1 SINE B4 141 224 0 7 1171 207 0 0 0 chr11 76814645 76814668 -45029188 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1171 234 0 0 0 chr11 76815790 76815816 -45028040 + (GGA)n Simple_repeat Simple_repeat 2 27 0 7 1171 458 269 0 0 chr11 76815913 76816017 -45027839 + PB1D10 SINE Alu 1 104 -13 7 1171 456 241 139 173 chr11 76816310 76816576 -45027280 - B4A SINE B4 -6 286 30 7 1171 230 168 207 14 chr11 76816717 76816786 -45027070 + BC1_Mm scRNA scRNA 2 83 0 7 1171 1047 92 43 0 chr11 76816896 76817037 -45026819 + B1_Mus1 SINE Alu 2 148 0 7 1171 219 152 0 80 chr11 76817123 76817173 -45026683 - PB1D7 SINE Alu -65 55 10 7 1171 250 273 104 83 chr11 76817396 76817492 -45026364 + Tigger16a DNA Tigger 835 932 -1 7 1171 273 279 0 37 chr11 76818329 76818411 -45025445 - MIR SINE MIR -124 138 60 7 1171 23 0 0 0 chr11 76818552 76818575 -45025281 + AT_rich Low_complexity Low_complexity 1 23 0 7 1171 294 29 0 0 chr11 76819442 76819477 -45024379 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1171 306 0 0 0 chr11 76819477 76819510 -45024346 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1171 182 37 0 36 chr11 76819728 76819756 -45024100 + (CCCCCA)n Simple_repeat Simple_repeat 5 31 0 7 1171 288 130 0 0 chr11 76821193 76821239 -45022617 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1171 311 263 79 0 chr11 76821325 76821401 -45022455 + ID4 SINE ID 2 83 0 7 1171 534 143 0 0 chr11 76821593 76821684 -45022172 + (TATG)n Simple_repeat Simple_repeat 1 91 0 7 1171 894 163 20 13 chr11 76821766 76821915 -45021941 + B1_Mur4 SINE Alu 1 150 0 7 1171 188 114 56 28 chr11 76821921 76821993 -45021863 + A-rich Low_complexity Low_complexity 2 75 0 7 1171 876 274 19 9 chr11 76822272 76822482 -45021374 + ID_B1 SINE B4 12 223 -1 7 1171 506 246 24 28 chr11 76823589 76823721 -45020135 + PB1D7 SINE Alu 1 126 -21 7 1171 335 0 35 35 chr11 76823759 76823816 -45020040 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1171 722 253 83 25 chr11 76825943 76826244 -45017612 - MTE2a LTR MaLR 0 379 35 7 1171 285 75 0 0 chr11 76827039 76827079 -45016777 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 7 1171 1071 122 26 0 chr11 76827080 76827236 -45016620 - B2_Mm2 SINE B2 -35 160 1 7 1171 207 0 0 0 chr11 76827246 76827269 -45016587 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1171 1190 48 0 20 chr11 76827269 76827419 -45016437 - B1_Mus1 SINE Alu 0 148 2 7 1171 731 281 117 58 chr11 76828961 76829218 -45014638 + B4A SINE B4 1 272 -20 7 1171 294 257 44 106 chr11 76829417 76829436 -45014420 - B1_Mm SINE Alu -16 131 108 7 1171 3135 73 13 0 chr11 76829436 76829831 -45014025 - MTB LTR MaLR 0 400 1 7 1171 413 247 10 40 chr11 76829831 76829945 -45013911 - B1F SINE Alu -3 117 2 7 1171 271 262 23 70 chr11 76829868 76829954 -45013902 - B4A SINE B4 -126 166 85 7 1171 331 250 24 48 chr11 76830826 76830910 -45012946 + ID_B1 SINE B4 95 176 -48 7 1171 322 295 0 59 chr11 76831612 76831713 -45012143 - PB1D10 SINE Alu -22 95 1 7 1171 231 229 113 14 chr11 76832124 76832195 -45011661 + ID4 SINE ID 2 79 -4 7 1171 200 288 0 33 chr11 76832867 76832928 -45010928 + C-rich Low_complexity Low_complexity 3 61 0 7 1171 332 266 0 0 chr11 76833613 76833692 -45010164 + ID4_ SINE ID 2 80 -3 7 1171 892 151 11 11 chr11 76834228 76834402 -45009454 + CT-rich Low_complexity Low_complexity 3 176 0 7 1171 582 211 53 0 chr11 76834404 76834518 -45009338 - PB1D9 SINE Alu 0 120 1 7 1171 430 314 0 0 chr11 76835721 76835839 -45008017 - B3A SINE B2 -26 172 55 7 1171 691 194 0 22 chr11 76836096 76836233 -45007623 + B3 SINE B2 2 135 -81 7 1171 246 32 0 0 chr11 76836269 76836300 -45007556 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 1171 307 229 153 48 chr11 76837172 76837296 -45006560 - B1F2 SINE Alu 0 149 13 7 1171 527 143 146 31 chr11 76837508 76837638 -45006218 + B1_Mur4 SINE Alu 6 150 0 7 1171 239 235 0 105 chr11 76838208 76838284 -45005572 - PB1D10 SINE Alu -39 78 11 7 1171 647 175 47 8 chr11 76838351 76838478 -45005378 - B1_Mur2 SINE Alu -16 133 2 7 1171 180 0 0 0 chr11 76838943 76838963 -45004893 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1171 567 132 0 0 chr11 76839201 76839292 -45004564 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1171 261 0 0 0 chr11 76840406 76840435 -45003421 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1171 645 229 21 0 chr11 76841184 76841328 -45002528 - B1_Mur1 SINE Alu 0 149 3 7 1171 199 286 50 20 chr11 76841542 76841642 -45002214 - MIRc SINE MIR -13 255 153 7 1171 328 243 54 36 chr11 76843071 76843182 -45000674 - PB1D9 SINE Alu -2 118 6 7 1171 222 175 0 0 chr11 76843281 76843298 -45000558 + A-rich Low_complexity Low_complexity 1 17 0 7 1171 1220 28 0 14 chr11 76843298 76843445 -45000411 + B1_Mus1 SINE Alu 2 146 -2 7 1171 222 175 0 0 chr11 76843445 76843490 -45000366 + A-rich Low_complexity Low_complexity 18 62 0 7 1171 447 267 254 49 chr11 76843556 76843903 -44999953 - MER47B DNA MER2_type 0 418 1 7 1171 278 327 59 10 chr11 76844225 76844327 -44999529 + RSINE1 SINE B4 58 164 -1 7 1171 1233 22 0 0 chr11 76844519 76844658 -44999198 + B1_Mus1 SINE Alu 2 140 -8 7 1171 299 256 24 12 chr11 76846493 76846576 -44997280 + PB1D10 SINE Alu 27 110 -7 7 1171 372 94 0 0 chr11 76846579 76846632 -44997224 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1171 725 218 224 0 chr11 76847043 76847222 -44996634 - ID_B1 SINE B4 -2 222 4 7 1171 332 271 12 0 chr11 76847292 76847377 -44996479 - PB1D10 SINE Alu -30 87 2 7 1171 34 65 0 0 chr11 76847582 76847644 -44996212 + AT_rich Low_complexity Low_complexity 1 62 0 7 1171 602 146 187 0 chr11 76847743 76847866 -44995990 - B1_Mus2 SINE Alu 0 147 2 7 1171 538 261 159 0 chr11 76847969 76848164 -44995692 + B4 SINE B4 2 227 -65 7 1171 972 156 0 0 chr11 76848328 76848508 -44995348 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1171 382 237 0 0 chr11 76848517 76848593 -44995263 + B3 SINE B2 23 98 -118 7 1171 25 0 0 0 chr11 76848616 76848641 -44995215 + AT_rich Low_complexity Low_complexity 1 25 0 7 1171 345 177 16 0 chr11 76848645 76848707 -44995149 + B4 SINE B4 216 278 -14 7 1171 330 291 24 103 chr11 76848803 76848846 -44995010 + MT2B LTR ERVL 127 156 -445 7 1171 794 151 0 0 chr11 76848846 76848972 -44994884 + B1_Mur3 SINE Alu 1 126 -23 7 1171 1218 40 0 0 chr11 76849449 76849597 -44994259 + B1_Mus1 SINE Alu 1 148 0 7 1171 315 266 12 12 chr11 76849709 76849789 -44994067 + RSINE1 SINE B4 2 81 -84 7 1171 312 296 0 0 chr11 76850147 76850245 -44993611 + GA-rich Low_complexity Low_complexity 1 98 0 7 1171 2784 100 3 3 chr11 76850294 76850676 -44993180 - RLTR14 LTR ERV1 0 382 1 7 1171 233 281 0 10 chr11 76850776 76850873 -44992983 + GA-rich Low_complexity Low_complexity 3 98 0 7 1171 729 34 0 0 chr11 76850997 76851085 -44992771 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 7 1171 392 212 133 17 chr11 76851463 76851583 -44992273 + MTEa LTR MaLR 47 180 -199 7 1171 549 268 0 65 chr11 76851594 76851762 -44992094 - Lx5 LINE L1 -410 6640 6484 8 1171 447 177 0 0 chr11 76851764 76851843 -44992013 - Lx5 LINE L1 -687 6363 6285 8 1171 1417 230 110 22 chr11 76851842 76852251 -44991605 + Lx6 LINE L1 7016 7460 0 8 1171 440 185 92 8 chr11 76852257 76852377 -44991479 - Lx5 LINE L1 -8 7042 6913 8 1171 330 236 95 89 chr11 76852409 76852567 -44991289 + MTEa LTR MaLR 167 325 -54 7 1171 695 154 15 0 chr11 76852568 76852698 -44991158 + CT-rich Low_complexity Low_complexity 3 134 0 8 1171 466 151 80 54 chr11 76852716 76852828 -44991028 + PB1D9 SINE Alu 5 119 -1 8 1171 235 190 17 0 chr11 76852838 76852896 -44990960 + MTEa LTR MaLR 319 377 -2 7 1171 1286 77 31 52 chr11 76853163 76853328 -44990528 + B2_Mm2 SINE B2 2 171 -24 8 1171 1080 57 0 35 chr11 76853328 76853473 -44990383 + B1_Mus1 SINE Alu 1 140 -8 8 1171 269 26 26 0 chr11 76853473 76853511 -44990345 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1171 1286 77 31 52 chr11 76853511 76853537 -44990319 + B2_Mm2 SINE B2 172 189 -6 8 1171 534 200 131 0 chr11 76853616 76853746 -44990110 + B1_Mus2 SINE Alu 1 147 0 8 1171 2775 183 107 119 chr11 76854019 76854268 -44989588 - MTC-int LTR MaLR -6 1252 1042 8 1171 815 161 7 14 chr11 76854268 76854407 -44989449 + B1_Mur4 SINE Alu 3 140 -10 8 1171 2775 183 107 119 chr11 76854407 76855003 -44988853 - MTC-int LTR MaLR -217 1041 409 8 1171 606 28 0 0 chr11 76855003 76855075 -44988781 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1171 2775 183 107 119 chr11 76855075 76855100 -44988756 - MTC-int LTR MaLR -850 408 392 8 1171 718 174 67 22 chr11 76855100 76855235 -44988621 - B1_Mur4 SINE Alu -5 145 5 8 1171 2775 212 123 93 chr11 76855235 76855527 -44988329 - MTC-int LTR MaLR -867 391 2 8 1171 270 243 0 51 chr11 76855527 76855545 -44988311 - MTC LTR MaLR 0 374 359 8 1171 2516 183 14 29 chr11 76855545 76856029 -44987827 + RLTR28B LTR ERVL 1 477 -4 8 1171 2467 123 25 0 chr11 76856029 76856420 -44987436 - MTC LTR MaLR -17 404 5 8 1171 228 150 0 0 chr11 76856514 76856554 -44987302 - B3A SINE B2 -158 40 1 8 1171 649 148 96 0 chr11 76856561 76856676 -44987180 + RLTR18-int LTR ERVK 4738 4863 -498 8 1171 360 206 73 0 chr11 76856716 76856784 -44987072 - RLTR18-int LTR ERVK -784 4577 4505 8 1171 470 194 36 27 chr11 76856788 76856899 -44986957 + B3 SINE B2 30 141 -75 8 1171 435 19 0 0 chr11 76857373 76857425 -44986431 + (TC)n Simple_repeat Simple_repeat 2 53 0 8 1171 355 262 0 0 chr11 76858011 76858091 -44985765 - ID4 SINE ID -1 82 3 8 1171 1338 91 37 0 chr11 76858209 76858396 -44985460 + B2_Mm2 SINE B2 2 195 0 8 1171 407 214 14 25 chr11 76858528 76858634 -44985222 + PB1 SINE Alu 1 104 -23 8 1171 890 211 46 15 chr11 76858716 76858913 -44984943 + B3 SINE B2 2 204 -12 8 1171 21 36 0 0 chr11 76859112 76859140 -44984716 + AT_rich Low_complexity Low_complexity 1 28 0 8 1171 207 0 0 0 chr11 76859662 76859685 -44984171 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 8 1171 1055 152 22 11 chr11 76861371 76861551 -44982305 - B2_Mm2 SINE B2 -11 184 3 8 1171 252 0 0 0 chr11 76862479 76862507 -44981349 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1171 1156 49 7 0 chr11 76863159 76863303 -44980553 - B1_Mus1 SINE Alu -2 146 2 8 1171 411 306 0 10 chr11 76863405 76863504 -44980352 - B1F SINE Alu -51 98 1 8 1171 241 318 119 37 chr11 76863514 76863648 -44980208 - ID_B1 SINE B4 -1 223 79 8 1171 432 240 46 37 chr11 76863658 76863766 -44980090 - PB1D9 SINE Alu -6 114 6 8 1171 303 28 0 0 chr11 76864021 76864057 -44979799 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 8 1171 256 301 184 21 chr11 76864341 76864531 -44979325 + MIR SINE MIR 19 239 -23 8 1171 668 205 86 51 chr11 76864632 76864770 -44979086 + B3 SINE B2 34 170 -46 8 1171 318 26 0 0 chr11 76864770 76864809 -44979047 + (TC)n Simple_repeat Simple_repeat 1 39 0 8 1171 306 50 0 0 chr11 76864809 76864848 -44979008 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1171 668 205 86 51 chr11 76864848 76864883 -44978973 + B3 SINE B2 171 213 -3 8 1171 515 68 14 0 chr11 76864972 76865046 -44978810 - B1_Mus2 SINE Alu -8 139 65 8 1171 286 214 23 23 chr11 76865046 76865058 -44978798 - ID_B1 SINE B4 -8 216 131 8 1171 658 245 75 20 chr11 76865142 76865342 -44978514 - B3 SINE B2 -5 211 1 8 1171 24 0 0 0 chr11 76865443 76865467 -44978389 + AT_rich Low_complexity Low_complexity 1 24 0 8 1171 1498 28 28 0 chr11 76865520 76865696 -44978160 - B2_Mm2 SINE B2 -14 181 1 8 1171 216 176 0 0 chr11 76865758 76865792 -44978064 - ID4_ SINE ID 0 83 50 8 1171 233 291 78 108 chr11 76866018 76866042 -44977814 + B4 SINE B4 64 220 -68 8 1171 476 229 30 33 chr11 76866042 76866180 -44977676 + B1F1 SINE Alu 1 143 -6 8 1171 739 204 86 32 chr11 76866249 76866436 -44977420 + B3A SINE B2 1 197 -1 8 1171 253 271 229 0 chr11 76866715 76866833 -44977023 + RSINE1 SINE B4 2 146 -19 8 1171 424 229 31 0 chr11 76866922 76867018 -44976838 + PB1D10 SINE Alu 11 109 -8 8 1171 411 38 0 0 chr11 76867019 76867072 -44976784 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1171 268 253 10 164 chr11 76867113 76867217 -44976639 + B4A SINE B4 53 140 -152 8 1171 1514 58 5 5 chr11 76867871 76868061 -44975795 + B2_Mm2 SINE B2 1 190 -5 8 1171 345 273 167 2 chr11 76868729 76869028 -44974828 + L1M2 LINE L1 5300 5678 -613 8 1171 568 142 24 55 chr11 76869101 76869228 -44974628 - B1_Mur2 SINE Alu -1 148 26 8 1171 318 131 188 15 chr11 76869765 76869866 -44973990 - B2_Mm2 SINE B2 -6 187 47 8 1171 1173 126 35 0 chr11 76869911 76870085 -44973771 - B2_Mm1t SINE B2 -12 181 2 8 1171 306 0 0 0 chr11 76871411 76871445 -44972411 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1171 635 191 78 42 chr11 76871484 76871626 -44972230 + B1_Mur2 SINE Alu 3 149 0 8 1171 319 264 21 86 chr11 76872235 76872350 -44971506 - B1F1 SINE Alu 0 117 11 8 1171 239 289 12 12 chr11 76872502 76872586 -44971270 + B4A SINE B4 209 292 0 8 1171 180 0 0 0 chr11 76872664 76872684 -44971172 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 1171 336 267 99 7 chr11 76872853 76873004 -44970852 + L1M5 LINE L1 3114 3278 -2868 8 1171 294 279 246 58 chr11 76873228 76873468 -44970388 - B4A SINE B4 -6 286 2 8 1171 802 195 128 26 chr11 76873485 76873680 -44970176 - B3 SINE B2 0 216 2 8 1171 450 271 75 0 chr11 76873904 76874037 -44969819 + MER74B LTR ERVL 121 263 -359 8 1171 744 178 13 27 chr11 76874164 76874314 -44969542 + B1_Mur3 SINE Alu 2 149 0 8 1171 854 118 14 0 chr11 76874455 76874599 -44969257 + URR1A DNA MER1_type 81 226 0 8 1171 386 218 89 18 chr11 76874868 76874980 -44968876 + B3A SINE B2 1 120 -78 8 1171 28 0 0 0 chr11 76875022 76875050 -44968806 + AT_rich Low_complexity Low_complexity 1 28 0 8 1171 585 250 41 7 chr11 76875202 76875353 -44968503 + RSINE1 SINE B4 1 157 -8 8 1171 21 36 0 0 chr11 76875359 76875387 -44968469 + AT_rich Low_complexity Low_complexity 1 28 0 8 1171 835 219 94 25 chr11 76875387 76875588 -44968268 + B3 SINE B2 2 216 0 8 1171 548 221 220 28 chr11 76875591 76875768 -44968088 + B3 SINE B2 4 214 -2 8 1171 302 288 38 0 chr11 76876079 76876159 -44967697 + ID4_ SINE ID 1 83 0 8 1171 261 0 0 0 chr11 76876668 76876697 -44967159 + (TA)n Simple_repeat Simple_repeat 1 29 0 8 1171 186 43 0 0 chr11 76876741 76876764 -44967092 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1171 413 243 28 0 chr11 76877888 76877995 -44965861 - PB1D10 SINE Alu 0 117 8 8 1171 1194 48 0 27 chr11 76878683 76878833 -44965023 - B1_Mus2 SINE Alu -1 146 1 8 1171 914 171 13 6 chr11 76878837 76878996 -44964860 + URR1B DNA MER1_type 1 160 -65 8 1171 512 257 94 14 chr11 76879139 76879277 -44964579 + RSINE1 SINE B4 8 156 -9 8 1171 215 323 0 0 chr11 76879331 76879396 -44964460 + PB1D10 SINE Alu 5 69 -48 8 1171 301 260 143 20 chr11 76879478 76879576 -44964280 + ID_B1 SINE B4 114 223 -1 8 1171 938 234 0 20 chr11 76879582 76879778 -44964078 + B3 SINE B2 1 192 -24 8 1171 231 262 0 93 chr11 76879846 76879964 -44963892 + L1M5 LINE L1 3784 3890 -2256 8 1171 295 223 94 125 chr11 76880235 76880363 -44963493 + PB1 SINE Alu 1 124 -3 8 1171 353 282 90 9 chr11 76880411 76880522 -44963334 + PB1D7 SINE Alu 1 120 0 8 1171 471 287 207 19 chr11 76880524 76880833 -44963023 + L1M4 LINE L1 954 1320 -5584 8 1171 252 227 125 0 chr11 76881167 76881255 -44962601 + L1M4 LINE L1 1513 1611 -5723 8 1171 1212 54 0 0 chr11 76881602 76881749 -44962107 - B1_Mm SINE Alu 0 147 1 8 1171 540 264 8 16 chr11 76882313 76882440 -44961416 - ID_B1 SINE B4 -15 209 84 8 1171 359 280 90 0 chr11 76882994 76883094 -44960762 + PB1D10 SINE Alu 2 110 -7 8 1171 501 304 35 57 chr11 76883231 76883513 -44960343 + B4A SINE B4 3 278 -14 8 1171 259 327 88 19 chr11 76884134 76884293 -44959563 + B4A SINE B4 1 170 -122 8 1171 314 266 135 31 chr11 76884964 76885127 -44958729 + LTR33A_ LTR ERVL 286 465 -66 8 1171 1004 238 117 29 chr11 76885411 76885907 -44957949 + L1MB7 LINE L1 4877 5486 -698 8 1171 808 212 0 0 chr11 76885907 76886053 -44957803 + B1_Mur2 SINE Alu 1 146 -3 8 1171 471 252 209 59 chr11 76886053 76886331 -44957525 + L1MB7 LINE L1 5487 5807 -377 8 1171 774 273 91 19 chr11 76886340 76886605 -44957251 + B4A SINE B4 3 286 -6 8 1171 26 0 0 0 chr11 76886718 76886744 -44957112 + AT_rich Low_complexity Low_complexity 1 26 0 8 1171 924 92 216 0 chr11 76886749 76886902 -44956954 + B2_Mm1t SINE B2 1 186 -7 8 1171 1120 77 0 14 chr11 76886938 76887077 -44956779 + B1_Mm SINE Alu 1 139 -8 8 1171 261 0 0 0 chr11 76887077 76887106 -44956750 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 1171 321 225 247 43 chr11 76887231 76887417 -44956439 + L1MB7 LINE L1 5914 6137 -47 8 1171 250 274 126 50 chr11 76887427 76887546 -44956310 + RSINE1 SINE B4 38 165 0 8 1171 27 0 0 0 chr11 76887563 76887590 -44956266 + AT_rich Low_complexity Low_complexity 1 27 0 9 1171 370 303 89 27 chr11 76887890 76888036 -44955820 + RSINE1 SINE B4 11 165 0 9 1171 1133 76 21 0 chr11 76888078 76888223 -44955633 + B1_Mus1 SINE Alu 1 148 0 9 1171 440 310 13 65 chr11 76888368 76888523 -44955333 + RSINE1 SINE B4 15 161 -4 9 1171 257 233 0 62 chr11 76888717 76888781 -44955075 - PB1D10 SINE Alu -5 112 53 9 1171 402 21 0 0 chr11 76889288 76889335 -44954521 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1171 360 280 110 0 chr11 76889345 76889463 -44954393 - RSINE1 SINE B4 -23 142 12 9 1171 305 293 114 68 chr11 76889473 76889605 -44954251 + MIRb SINE MIR 55 192 -76 9 1171 418 236 10 61 chr11 76889818 76889917 -44953939 + B1_Mur1 SINE Alu 21 114 -35 9 1171 3568 48 27 11 chr11 76890792 76891239 -44952617 - L1_Mus1 LINE L1 0 6567 6114 9 1171 363 265 8 45 chr11 76892327 76892437 -44951419 - PB1D10 SINE Alu -2 115 8 9 1171 313 44 0 0 chr11 76892609 76892654 -44951202 + B1_Mm SINE Alu 103 147 0 9 1171 27 0 0 0 chr11 76892654 76892681 -44951175 + AT_rich Low_complexity Low_complexity 1 27 0 9 1171 1184 48 14 0 chr11 76892681 76892826 -44951030 + B1_Mus2 SINE Alu 1 147 0 9 1171 2524 162 201 11 chr11 76892851 76893413 -44950443 - RLTR33 LTR ERVK 0 678 10 9 1171 360 247 0 0 chr11 76893705 76893792 -44950064 + ID4 SINE ID 5 91 -61 9 1171 1278 69 75 0 chr11 76893857 76894031 -44949825 - B2_Mm2 SINE B2 -8 187 1 9 1171 2015 158 256 21 chr11 76894032 76894070 -44949786 - MT2B LTR ERVL -3 598 561 9 1171 252 0 0 0 chr11 76894070 76894098 -44949758 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 1171 447 35 0 0 chr11 76894098 76894154 -44949702 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1171 2015 158 256 21 chr11 76894154 76894598 -44949258 - MT2B LTR ERVL -41 560 2 9 1171 2688 99 109 99 chr11 76894650 76895164 -44948692 + MURVY-LTR LTR ERV1 1 519 0 9 1171 382 205 24 0 chr11 76895307 76895390 -44948466 - ID_B1 SINE B4 -57 167 83 9 1171 259 292 15 0 chr11 76895487 76895552 -44948304 + ID SINE ID 8 73 -151 9 1171 730 208 206 11 chr11 76895720 76895900 -44947956 - B3 SINE B2 -1 215 1 9 1171 490 300 46 0 chr11 76895903 76896033 -44947823 - B1F2 SINE Alu -6 143 8 9 1171 23 33 0 0 chr11 76896047 76896077 -44947779 + AT_rich Low_complexity Low_complexity 1 30 0 9 1171 699 247 12 6 chr11 76896094 76896257 -44947599 + B3 SINE B2 47 210 -6 9 1171 645 105 0 0 chr11 76896359 76896454 -44947402 + (TC)n Simple_repeat Simple_repeat 1 95 0 9 1171 287 273 0 0 chr11 76896454 76896520 -44947336 - PB1D9 SINE Alu -21 99 34 9 1171 341 278 69 69 chr11 76896570 76896686 -44947170 + B4 SINE B4 24 139 -153 9 1171 345 109 0 0 chr11 76896724 76896779 -44947077 + (GA)n Simple_repeat Simple_repeat 1 55 0 9 1171 355 145 0 17 chr11 76896972 76897042 -44946814 - L1MB8 LINE L1 -175 6009 5944 9 1171 216 122 0 0 chr11 76897156 76897197 -44946659 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 9 1171 254 238 178 38 chr11 76897249 76897406 -44946450 + HAL1 LINE L1 2044 2222 -285 9 1171 399 21 0 0 chr11 76897420 76897468 -44946388 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1171 301 229 40 62 chr11 76897674 76897835 -44946021 - RLTR11A LTR ERVK -325 252 112 9 1171 257 305 0 10 chr11 76897887 76897983 -44945873 + HAL1 LINE L1 2264 2358 -149 9 1171 248 305 73 48 chr11 76897998 76898050 -44945806 - MER58B DNA MER1_type 0 341 289 9 1171 4518 54 25 29 chr11 76898050 76898639 -44945217 + LTRIS_Mus LTR ERV1 1 587 0 9 1171 248 305 73 48 chr11 76898639 76898710 -44945146 - MER58B DNA MER1_type -53 288 215 9 1171 211 236 18 18 chr11 76898779 76898835 -44945021 - B1F1 SINE Alu -93 56 1 9 1171 2574 162 17 45 chr11 76899649 76899759 -44944097 - RLTR19C LTR ERVK -3 503 405 9 1171 225 0 0 0 chr11 76899759 76899784 -44944072 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 9 1171 2574 162 17 45 chr11 76899784 76900190 -44943666 - RLTR19C LTR ERVK -102 404 1 9 1171 377 276 0 9 chr11 76900304 76900410 -44943446 - PB1D10 SINE Alu -12 105 1 9 1171 281 175 141 16 chr11 76900668 76900732 -44943124 + MT2B LTR ERVL 3 74 -527 9 1171 1117 156 37 114 chr11 76900713 76901010 -44942846 + MT2B LTR ERVL 328 601 0 9 1171 1213 54 0 0 chr11 76901061 76901208 -44942648 + B1_Mm SINE Alu 1 147 0 9 1171 3834 46 33 0 chr11 76901413 76901873 -44941983 + MT2C_Mm LTR ERVL 1 475 0 9 1171 702 259 46 0 chr11 76902144 76902318 -44941538 - ID_B1 SINE B4 -38 186 5 9 1171 345 266 0 31 chr11 76902322 76902419 -44941437 + B3 SINE B2 11 104 -112 9 1171 292 186 0 0 chr11 76902440 76902499 -44941357 + B3 SINE B2 157 215 -1 9 1171 438 259 30 2 chr11 76903134 76903149 -44940707 + B1F SINE Alu 14 136 -13 9 1171 391 223 17 43 chr11 76903149 76903254 -44940602 + ID_B1 SINE B4 110 211 -13 9 1171 234 0 0 0 chr11 76903254 76903280 -44940576 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 9 1171 391 223 17 43 chr11 76903280 76903291 -44940565 + ID_B1 SINE B4 212 222 -2 9 1171 909 106 63 7 chr11 76904309 76904451 -44939405 + B1_Mur4 SINE Alu 1 150 0 9 1171 1336 114 5 0 chr11 76904456 76904649 -44939207 + B2_Mm2 SINE B2 2 195 0 9 1171 1055 93 0 7 chr11 76904650 76904791 -44939065 + B1_Mus2 SINE Alu 2 141 -6 9 1171 422 264 35 25 chr11 76904991 76905117 -44938739 + B1F SINE Alu 6 136 -13 9 1171 320 289 13 0 chr11 76905117 76905193 -44938663 + ID4_ SINE ID 3 79 -4 9 1171 417 273 188 0 chr11 76905412 76905577 -44938279 + MIRb SINE MIR 14 209 -59 9 1171 569 218 132 14 chr11 76905816 76905960 -44937896 - RSINE1 SINE B4 -3 162 2 9 1171 243 0 0 0 chr11 76906181 76906208 -44937648 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1171 22 0 0 0 chr11 76907007 76907029 -44936827 + GC_rich Low_complexity Low_complexity 1 22 0 9 1171 235 322 35 9 chr11 76908097 76908213 -44935643 + L2a LINE L2 2349 2467 -952 9 1171 354 23 0 0 chr11 76908227 76908270 -44935586 + (TATG)n Simple_repeat Simple_repeat 2 44 0 9 1171 1240 43 6 0 chr11 76908270 76908433 -44935423 - B2_Mm2 SINE B2 -31 164 1 9 1171 21 36 0 0 chr11 76908446 76908474 -44935382 + AT_rich Low_complexity Low_complexity 1 28 0 9 1171 712 198 0 102 chr11 76908501 76908687 -44935169 - B3A SINE B2 -13 203 37 9 1171 190 294 148 16 chr11 76908701 76908829 -44935027 + L2a LINE L2 2459 2603 -816 9 1171 575 188 103 0 chr11 76909044 76909161 -44934695 - B1_Mur4 SINE Alu -21 129 1 9 1171 309 264 91 36 chr11 76909176 76909286 -44934570 - PB1D10 SINE Alu 0 117 2 9 1171 223 316 186 23 chr11 76909289 76909609 -44934247 + L2a LINE L2 2792 3172 -254 9 1171 674 190 20 33 chr11 76909760 76909945 -44933911 - B3 SINE B2 -16 177 1 9 1171 203 161 0 18 chr11 76909998 76910055 -44933801 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1171 352 254 12 42 chr11 76910163 76910290 -44933566 + L2a LINE L2 3250 3424 -2 9 1171 225 0 0 0 chr11 76910930 76910955 -44932901 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 9 1171 319 296 23 126 chr11 76911261 76911435 -44932421 - MER91A DNA Tip100 -40 156 1 9 1171 288 298 43 9 chr11 76911464 76911579 -44932277 + HAL1 LINE L1 1317 1435 -1072 9 1171 547 293 92 53 chr11 76911671 76911755 -44932101 + L1MB8 LINE L1 5594 5672 -506 9 1171 264 30 0 0 chr11 76911755 76911788 -44932068 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1171 547 293 92 53 chr11 76911788 76912172 -44931684 + L1MB8 LINE L1 5673 6080 -98 9 1171 314 317 5 114 chr11 76912251 76912461 -44931395 - ID_B1 SINE B4 -33 191 5 9 1171 315 0 0 0 chr11 76912504 76912539 -44931317 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1171 1193 256 96 22 chr11 76912873 76913229 -44930627 + Lx7 LINE L1 6897 7278 -418 9 1171 1216 41 0 14 chr11 76913359 76913507 -44930349 - B1_Mm SINE Alu 0 147 2 9 1171 358 291 54 9 chr11 76914459 76914570 -44929286 + PB1D10 SINE Alu 2 117 0 9 1171 351 0 0 0 chr11 76914632 76914671 -44929185 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1171 610 13 25 0 chr11 76915122 76915201 -44928655 + (GA)n Simple_repeat Simple_repeat 1 81 0 9 1171 1212 48 7 0 chr11 76915347 76915493 -44928363 - B1_Mus2 SINE Alu 0 147 1 9 1171 488 212 0 10 chr11 76915930 76916030 -44927826 - PB1 SINE Alu -3 124 26 9 1171 180 0 0 0 chr11 76917207 76917227 -44926629 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1171 222 116 0 0 chr11 76918171 76918214 -44925642 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1171 364 259 230 17 chr11 76918214 76918449 -44925407 - LTR16A1 LTR ERVL -14 442 158 9 1171 1331 108 38 0 chr11 76919040 76919226 -44924630 - B2_Mm2 SINE B2 0 195 3 9 1171 811 204 7 13 chr11 76919341 76919490 -44924366 - B1_Mur1 SINE Alu -1 148 1 9 1171 399 259 139 0 chr11 76919518 76919626 -44924230 + ID_B1 SINE B4 91 213 -11 9 1171 345 259 78 101 chr11 76919626 76919639 -44924217 + PB1D10 SINE Alu 43 127 0 9 1171 529 164 25 136 chr11 76919742 76919904 -44923952 - B2_Mm2 SINE B2 -1 194 51 9 1171 1016 221 183 20 chr11 76919924 76920304 -44923552 - RMER1B Other Other -529 537 87 9 1171 973 227 128 15 chr11 76920327 76920600 -44923256 - RMER1B Other Other -708 358 55 9 1171 181 158 0 0 chr11 76921084 76921122 -44922734 + L3 LINE CR1 3552 3589 -900 9 1171 971 83 0 8 chr11 76921727 76921860 -44921996 - B1_Mus2 SINE Alu -15 132 1 9 1171 240 303 48 16 chr11 76921864 76921988 -44921868 + L2 LINE L2 2093 2220 -1199 9 1171 481 229 68 8 chr11 76922046 76922178 -44921678 + RCHARR1 DNA MER1_type 47 186 -788 9 1171 2450 247 84 28 chr11 76922305 76923408 -44920448 - Lx5 LINE L1 -41 7009 5893 9 1171 1831 151 105 103 chr11 76923405 76923748 -44920108 - L1_Mur2 LINE L1 -770 5107 4747 9 1171 1525 53 16 0 chr11 76923748 76923937 -44919919 - B2_Mm2 SINE B2 -2 193 2 9 1171 1831 151 105 103 chr11 76923937 76924050 -44919806 - L1_Mur2 LINE L1 -1131 4746 4650 9 1171 1262 199 186 3 chr11 76924050 76924421 -44919435 + RCHARR1 DNA MER1_type 384 825 -149 9 1171 222 118 0 0 chr11 76924421 76924455 -44919401 + (TA)n Simple_repeat Simple_repeat 1 34 0 9 1171 365 269 86 20 chr11 76924455 76924594 -44919262 + RCHARR1 DNA MER1_type 826 970 -4 9 1171 1096 176 0 10 chr11 76924591 76924798 -44919058 + URR1B DNA MER1_type 21 225 0 1 1171 216 329 55 0 chr11 76925052 76925125 -44918731 + L2 LINE L2 2382 2458 -961 9 1171 639 224 24 0 chr11 76925133 76925258 -44918598 + B1_Mus1 SINE Alu 1 128 -20 1 1171 198 0 0 0 chr11 76925259 76925281 -44918575 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1171 185 102 0 71 chr11 76925281 76925323 -44918533 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1 1171 458 234 17 59 chr11 76925383 76925501 -44918355 + RSINE1 SINE B4 2 114 -51 1 1171 724 139 22 7 chr11 76925544 76925682 -44918174 + CT-rich Low_complexity Low_complexity 1 140 0 1 1171 323 102 0 20 chr11 76925682 76925732 -44918124 + (CCCCCT)n Simple_repeat Simple_repeat 4 52 0 1 1171 243 354 28 75 chr11 76925733 76925840 -44918016 - PB1D10 SINE Alu -14 103 2 1 1171 710 298 14 9 chr11 76926041 76926251 -44917605 - B3 SINE B2 -5 211 1 1 1171 599 0 14 0 chr11 76926267 76926338 -44917518 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1 1171 794 235 12 6 chr11 76926371 76926538 -44917318 - B3 SINE B2 -48 168 1 1 1171 378 268 106 9 chr11 76926701 76926814 -44917042 - RSINE1 SINE B4 -39 126 3 1 1171 261 0 0 0 chr11 76926926 76926955 -44916901 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1171 353 148 16 0 chr11 76926960 76927021 -44916835 - ID4 SINE ID -16 67 6 1 1171 1585 32 10 16 chr11 76927487 76927680 -44916176 + B2_Mm1a SINE B2 2 193 0 1 1171 445 158 170 47 chr11 76927787 76927893 -44915963 - B1_Mur1 SINE Alu -6 143 25 1 1171 432 0 0 0 chr11 76928106 76928154 -44915702 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1171 306 0 0 0 chr11 76928154 76928187 -44915669 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1171 297 0 0 0 chr11 76928187 76928219 -44915637 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1171 514 340 48 68 chr11 76928850 76929263 -44914593 - MTD LTR MaLR -14 405 1 1 1171 269 143 36 0 chr11 76930017 76930073 -44913783 + (CATA)n Simple_repeat Simple_repeat 2 59 0 1 1171 2131 202 91 12 chr11 76930131 76930647 -44913209 + RLTR31B_Mm LTR ERVK 1 557 0 1 1171 1291 172 5 0 chr11 76930734 76930943 -44912913 + B3 SINE B2 1 210 -6 1 1171 679 206 15 0 chr11 76931115 76931251 -44912605 + ID_B1 SINE B4 80 217 -7 1 1171 974 251 5 0 chr11 76931934 76932149 -44911707 - B3 SINE B2 0 216 1 1 1171 1047 197 86 104 chr11 76932410 76932836 -44911020 + MT2A LTR ERVL 1 554 -47 1 1171 637 221 16 0 chr11 76932840 76932967 -44910889 - B1_Mur4 SINE Alu -6 144 16 1 1171 390 91 0 0 chr11 76932979 76933034 -44910822 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1171 432 224 24 67 chr11 76933112 76933322 -44910534 + RLTR15 LTR ERVK 28 228 -131 1 1171 843 263 23 38 chr11 76933453 76933714 -44910142 - L1_Rod LINE L1 -80 5767 5511 1 1171 253 215 30 30 chr11 76933715 76933782 -44910074 - L1_Mur3 LINE L1 -454 5426 5360 1 1171 279 79 0 0 chr11 76933790 76933828 -44910028 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1171 245 132 0 0 chr11 76933830 76933868 -44909988 - B1_Mur1 SINE Alu -13 136 99 1 1171 583 293 82 48 chr11 76934205 76934413 -44909443 - ID_B1 SINE B4 -5 219 5 1 1171 22 0 0 0 chr11 76934434 76934456 -44909400 + AT_rich Low_complexity Low_complexity 1 22 0 1 1171 522 0 0 0 chr11 76935305 76935363 -44908493 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1171 247 338 0 0 chr11 76935615 76935683 -44908173 - ID4_ SINE ID -2 81 14 1 1171 1135 181 5 27 chr11 76935726 76935947 -44907909 - B3 SINE B2 0 216 1 1 1171 1507 57 10 15 chr11 76936152 76936347 -44907509 + B2_Mm2 SINE B2 2 195 0 1 1171 24 32 0 0 chr11 76936384 76936415 -44907441 + AT_rich Low_complexity Low_complexity 1 31 0 1 1171 1324 174 0 9 chr11 76936436 76936651 -44907205 - B3 SINE B2 -3 213 1 1 1171 523 269 151 36 chr11 76936666 76936709 -44907147 - B3A SINE B2 -12 186 149 1 1171 366 23 0 0 chr11 76936709 76936752 -44907104 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1171 523 269 151 36 chr11 76936752 76936874 -44906982 - B3A SINE B2 -50 148 2 1 1171 1240 119 22 18 chr11 76937034 76937256 -44906600 + Lx LINE L1 6425 6647 -7 1 1171 1040 91 7 7 chr11 76937363 76937507 -44906349 + B1_Mus1 SINE Alu 5 148 0 1 1171 879 259 57 75 chr11 76937532 76937916 -44905940 + MTEa LTR MaLR 1 377 -2 1 1171 327 49 0 0 chr11 76938331 76938372 -44905484 + (TCC)n Simple_repeat Simple_repeat 2 42 0 1 1171 831 194 7 0 chr11 76938372 76938511 -44905345 - B1_Mur2 SINE Alu -6 143 4 1 1171 225 286 36 0 chr11 76938721 76938805 -44905051 + MLT1L LTR MaLR 519 605 -5 1 1171 589 103 0 0 chr11 76938834 76938921 -44904935 + B1_Mur2 SINE Alu 62 148 -1 1 1172 1696 209 83 8 chr11 76939485 76939846 -44904010 + Lx5 LINE L1 6662 7049 -1 1 1172 443 330 64 4 chr11 76939975 76940209 -44903647 + L1MC4 LINE L1 6711 6958 -1084 1 1172 1115 89 0 7 chr11 76940280 76940427 -44903429 + B1_Mus2 SINE Alu 2 147 0 1 1172 236 138 0 49 chr11 76940428 76940489 -44903367 + A-rich Low_complexity Low_complexity 1 58 0 1 1172 552 286 98 11 chr11 76940503 76940768 -44903088 + L1ME2z LINE L1 5853 6140 -304 1 1172 188 35 35 0 chr11 76940799 76940828 -44903028 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1172 180 0 0 0 chr11 76941291 76941311 -44902545 + (CCCCCT)n Simple_repeat Simple_repeat 4 23 0 1 1172 336 292 143 0 chr11 76941520 76941674 -44902182 + L1MC4 LINE L1 6938 7113 -929 1 1172 391 242 347 12 chr11 76941743 76941910 -44901946 - ID_B1 SINE B4 0 224 2 1 1172 909 149 200 0 chr11 76942244 76942419 -44901437 + B3 SINE B2 1 210 -6 1 1172 24 0 0 0 chr11 76942425 76942449 -44901407 + AT_rich Low_complexity Low_complexity 1 24 0 1 1172 240 111 0 0 chr11 76942921 76942957 -44900899 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 1 1172 504 0 0 0 chr11 76942963 76943019 -44900837 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1172 574 274 155 18 chr11 76943040 76943259 -44900597 - B4A SINE B4 -43 249 1 1 1172 204 242 0 61 chr11 76943588 76943637 -44900219 + polypyrimidine Low_complexity Low_complexity 17 64 0 1 1172 1451 93 0 35 chr11 76943637 76943838 -44900018 - B2_Mm2 SINE B2 0 195 2 1 1172 204 242 0 61 chr11 76943838 76943854 -44900002 + polypyrimidine Low_complexity Low_complexity 3 16 0 1 1172 21 0 0 0 chr11 76944116 76944137 -44899719 + AT_rich Low_complexity Low_complexity 1 21 0 1 1172 676 259 73 15 chr11 76944207 76944411 -44899445 + B3 SINE B2 1 216 0 1 1172 566 248 9 0 chr11 76944574 76944687 -44899169 + PB1D10 SINE Alu 2 115 -2 1 1172 358 240 13 26 chr11 76944687 76944764 -44899092 + ID2 SINE ID 2 77 -6 1 1172 342 156 0 0 chr11 76944764 76944828 -44899028 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1172 993 109 13 20 chr11 76945253 76945403 -44898453 - B1_Mur3 SINE Alu 0 149 1 1 1172 270 348 48 42 chr11 76945891 76946059 -44897797 + MLT1K LTR MaLR 9 177 -418 1 1172 635 277 139 12 chr11 76946657 76946909 -44896947 + B4A SINE B4 1 284 -8 1 1172 1170 61 45 109 chr11 76947069 76947270 -44896586 - B2_Mm2 SINE B2 -7 188 1 1 1172 4129 20 9 2 chr11 76947795 76948246 -44895610 + L1Md_F3 LINE L1 6131 6584 0 1 1172 515 313 38 0 chr11 76948618 76948749 -44895107 + RSINE1 SINE B4 1 136 -29 1 1172 495 0 0 0 chr11 76948751 76948806 -44895050 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1172 316 288 25 0 chr11 76948962 76949042 -44894814 + MLT1J LTR MaLR 86 167 -345 1 1172 962 63 0 16 chr11 76949110 76949226 -44894630 + B1_Mus1 SINE Alu 18 133 -15 1 1172 186 71 0 0 chr11 76949226 76949254 -44894602 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1172 962 63 0 16 chr11 76949254 76949266 -44894590 + B1_Mus1 SINE Alu 134 144 -4 1 1172 669 206 132 12 chr11 76949303 76949470 -44894386 + B3 SINE B2 30 216 0 1 1172 33 25 0 0 chr11 76949470 76949510 -44894346 + AT_rich Low_complexity Low_complexity 1 40 0 1 1172 774 206 35 0 chr11 76949610 76949751 -44894105 - B1_Mur1 SINE Alu 0 149 4 1 1172 491 252 86 80 chr11 76949830 76949981 -44893875 + B4 SINE B4 72 223 -69 1 1172 940 132 7 0 chr11 76949847 76949983 -44893873 + B1_Mus2 SINE Alu 11 147 0 1 1172 1218 35 28 0 chr11 76950136 76950277 -44893579 + B1_Mm SINE Alu 3 147 0 1 1172 257 0 30 0 chr11 76950278 76950311 -44893545 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1172 570 252 0 10 chr11 76951930 76952034 -44891822 + B1_Mur2 SINE Alu 1 103 -46 1 1172 4406 66 8 9 chr11 76952059 76952592 -44891264 - L1_Mus1 LINE L1 -1 6566 6035 1 1172 395 293 7 76 chr11 76952889 76953033 -44890823 + RSINE1 SINE B4 32 165 0 1 1172 215 326 144 21 chr11 76953380 76953477 -44890379 + PB1D10 SINE Alu 2 110 -7 1 1172 407 229 82 22 chr11 76953686 76953820 -44890036 + RSINE1 SINE B4 1 142 -23 1 1172 1308 229 44 64 chr11 76954899 76955197 -44888659 + B4 SINE B4 1 292 0 1 1172 393 22 0 0 chr11 76955230 76955276 -44888580 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1172 535 252 94 0 chr11 76955318 76955445 -44888411 - B1F1 SINE Alu -10 139 1 1 1172 849 284 5 9 chr11 76955518 76955735 -44888121 + B3 SINE B2 1 216 0 1 1172 291 269 96 17 chr11 76955752 76955930 -44887926 - L1MEc LINE L1 -406 6694 6503 1 1172 483 18 0 0 chr11 76956348 76956404 -44887452 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1172 479 294 108 65 chr11 76956698 76956975 -44886881 - LTR73 LTR ERV1 -124 448 160 1 1172 24 32 0 0 chr11 76957256 76957287 -44886569 + AT_rich Low_complexity Low_complexity 1 31 0 1 1172 568 209 30 30 chr11 76957494 76957662 -44886194 - Lx9 LINE L1 0 7644 7477 1 1172 344 230 15 15 chr11 76957661 76957767 -44886089 - L1MEc LINE L1 -4258 2829 2758 1 1172 654 139 164 0 chr11 76957851 76957973 -44885883 - B1_Mur3 SINE Alu -2 147 6 1 1172 571 283 144 5 chr11 76958066 76958254 -44885602 - ID_B1 SINE B4 -7 217 4 1 1172 26 64 0 0 chr11 76958310 76958357 -44885499 + AT_rich Low_complexity Low_complexity 1 47 0 1 1172 219 36 0 0 chr11 76958622 76958650 -44885206 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1172 460 273 28 21 chr11 76958660 76958802 -44885054 - ID_B1 SINE B4 0 224 82 1 1172 1000 139 0 16 chr11 76959928 76960111 -44883745 + CT-rich Low_complexity Low_complexity 1 180 0 1 1172 1163 76 7 0 chr11 76960111 76960255 -44883601 - B1_Mus1 SINE Alu -3 145 1 1 1172 466 301 7 36 chr11 76960714 76960852 -44883004 + ID_B1 SINE B4 91 224 0 1 1172 779 200 7 21 chr11 76960924 76961067 -44882789 + B1_Mm SINE Alu 1 141 -6 1 1172 267 31 0 0 chr11 76961068 76961100 -44882756 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1 1172 515 216 114 67 chr11 76961120 76961269 -44882587 + RSINE1 SINE B4 4 159 -6 1 1172 231 196 0 0 chr11 76961433 76961479 -44882377 + CT-rich Low_complexity Low_complexity 2 47 0 1 1172 934 148 14 0 chr11 76961696 76961838 -44882018 - B1_Mus2 SINE Alu -1 146 3 1 1172 958 241 9 33 chr11 76962015 76962046 -44881810 + B3 SINE B2 3 33 -183 1 1172 1011 234 90 77 chr11 76962046 76962411 -44881445 - ORR1D2 LTR MaLR 0 370 1 1 1172 958 241 9 33 chr11 76962411 76962593 -44881263 + B3 SINE B2 34 211 -5 1 1172 180 152 0 0 chr11 76964631 76964664 -44879192 + T-rich Low_complexity Low_complexity 1 33 0 1 1172 216 0 0 0 chr11 76964686 76964710 -44879146 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1172 412 286 80 6 chr11 76964813 76964975 -44878881 + B3A SINE B2 22 195 -3 1 1172 382 247 0 0 chr11 76965924 76965997 -44877859 - B3 SINE B2 0 216 144 1 1172 426 250 184 27 chr11 76966156 76966341 -44877515 - ID_B1 SINE B4 -8 216 3 1 1172 405 0 0 0 chr11 76966670 76966715 -44877141 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1172 571 274 80 6 chr11 76966736 76966912 -44876944 + MER5A DNA MER1_type 1 189 0 1 1172 410 290 19 9 chr11 76967892 76968000 -44875856 + PB1D10 SINE Alu 1 109 -8 1 1172 2054 219 77 34 chr11 76968440 76968878 -44874978 + RLTR20B2 LTR ERVK 4 462 -98 1 1172 519 45 0 0 chr11 76968878 76968944 -44874912 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1172 2054 219 77 34 chr11 76968944 76969039 -44874817 + RLTR20B2 LTR ERVK 463 559 -1 1 1172 3775 190 12 3 chr11 76969051 76969738 -44874118 - MYSERV16_I-int LTR ERVK -76 2250 1558 1 1172 24 0 0 0 chr11 76969780 76969804 -44874052 + AT_rich Low_complexity Low_complexity 1 24 0 1 1172 888 255 79 38 chr11 76969998 76970263 -44873593 + B4A SINE B4 1 276 -16 1 1172 1662 263 93 19 chr11 76970305 76970921 -44872935 + L1MB8 LINE L1 5478 6143 -35 1 1172 855 275 124 69 chr11 76970921 76971398 -44872458 + MLT1D LTR MaLR 1 503 -2 1 1172 1662 263 93 19 chr11 76971398 76971429 -44872427 + L1MB8 LINE L1 6144 6173 -5 1 1172 574 248 0 41 chr11 76971941 76972063 -44871793 - PB1D10 SINE Alu 0 117 1 1 1172 702 249 28 11 chr11 76972190 76972369 -44871487 + B3A SINE B2 17 198 0 1 1172 1675 22 5 21 chr11 76972374 76972562 -44871294 - B2_Mm1a SINE B2 -7 186 2 1 1172 441 0 0 0 chr11 76972736 76972785 -44871071 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1172 1220 61 0 7 chr11 76973432 76973580 -44870276 - B1_Mus2 SINE Alu 0 147 1 1 1172 776 177 56 7 chr11 76973608 76973750 -44870106 + B1_Mur3 SINE Alu 1 149 0 1 1172 624 153 0 0 chr11 76974538 76974675 -44869181 + CT-rich Low_complexity Low_complexity 1 137 0 1 1172 233 351 52 7 chr11 76975141 76975276 -44868580 + L1M5 LINE L1 5525 5665 -459 1 1172 368 308 23 8 chr11 76975334 76975465 -44868391 - MLT1B LTR MaLR -67 323 191 1 1172 519 66 0 0 chr11 76975501 76975577 -44868279 + (CAGAGA)n Simple_repeat Simple_repeat 1 76 0 1 1172 381 270 82 44 chr11 76975860 76976042 -44867814 + L1MDa LINE L1 29 217 -6416 1 1172 299 320 106 8 chr11 76976483 76976606 -44867250 - RSINE1 SINE B4 -29 136 2 1 1172 256 150 0 0 chr11 76977009 76977049 -44866807 - Kanga1a DNA Tc2 -453 301 262 1 1172 548 239 9 26 chr11 76977751 76977867 -44865989 - PB1D9 SINE Alu -6 114 1 1 1172 449 229 0 0 chr11 76978419 76978502 -44865354 + BC1_Mm scRNA scRNA 1 83 -69 1 1172 276 100 0 0 chr11 76978894 76978934 -44864922 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1172 2517 132 52 24 chr11 76978986 76979444 -44864412 + RMER16 LTR ERVK 63 533 0 1 1172 1307 47 0 0 chr11 76979578 76979726 -44864130 + B1_Mus1 SINE Alu 1 148 0 1 1172 270 0 0 0 chr11 76979726 76979756 -44864100 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1172 938 147 13 40 chr11 76979917 76980066 -44863790 + B1_Mur4 SINE Alu 2 146 -4 1 1172 207 0 0 0 chr11 76980121 76980144 -44863712 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1172 542 155 0 68 chr11 76980161 76980279 -44863577 + B1F2 SINE Alu 40 149 0 1 1172 248 258 0 61 chr11 76980628 76980694 -44863162 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 1 1172 325 305 52 98 chr11 76980721 76980914 -44862942 + MER20B DNA MER1_type 318 501 -282 1 1172 207 0 0 0 chr11 76980921 76980944 -44862912 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1172 311 145 0 14 chr11 76980944 76981014 -44862842 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1172 530 246 20 79 chr11 76981206 76981409 -44862447 - B3A SINE B2 -5 193 3 1 1172 650 118 67 24 chr11 76981458 76981623 -44862233 + CT-rich Low_complexity Low_complexity 4 175 0 1 1172 1226 40 0 43 chr11 76981623 76981808 -44862048 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 1 1172 323 286 104 28 chr11 76981813 76981957 -44861899 - HAL1-3A_ME LINE L1 -420 2438 2284 1 1172 324 272 137 22 chr11 76981928 76982067 -44861789 - HAL1-3A_ME LINE L1 -419 2439 2285 1 1172 1340 122 54 0 chr11 76982081 76982302 -44861554 + ORR1A4 LTR MaLR 97 329 0 1 1172 201 264 19 0 chr11 76982845 76982898 -44860958 + CT-rich Low_complexity Low_complexity 2 55 0 1 1172 528 302 58 78 chr11 76982995 76983304 -44860552 - L1MC1 LINE L1 -5 6328 6026 1 1172 454 280 65 21 chr11 76983284 76983470 -44860386 + Lx4A LINE L1 5652 5845 -1213 1 1172 612 0 0 0 chr11 76983507 76983575 -44860281 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1172 223 190 24 48 chr11 76983759 76983842 -44860014 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 1 1172 892 277 79 44 chr11 76983908 76984338 -44859518 - L1MC1 LINE L1 -303 6030 5586 1 1172 225 0 0 0 chr11 76984389 76984414 -44859442 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1172 1079 194 5 21 chr11 76984414 76984604 -44859252 - B3 SINE B2 -28 188 2 1 1172 418 268 0 12 chr11 76984607 76984690 -44859166 - PB1D7 SINE Alu -13 107 26 1 1172 416 318 68 5 chr11 76984915 76985105 -44858751 - L1MC1 LINE L1 -732 5612 5411 1 1172 680 174 70 0 chr11 76985107 76985222 -44858634 + RSINE1 SINE B4 6 128 -37 1 1172 258 299 18 36 chr11 76985279 76985390 -44858466 - L1MC1 LINE L1 -2356 5429 5321 1 1172 1361 20 0 0 chr11 76986008 76986155 -44857701 + B1_Mus1 SINE Alu 2 148 0 1 1172 235 121 0 43 chr11 76986165 76986234 -44857622 + A-rich Low_complexity Low_complexity 2 67 0 1 1172 1984 251 88 16 chr11 76986378 76987074 -44856782 + L1MA7 LINE L1 5536 6281 -10 1 1172 251 334 57 8 chr11 76988283 76988391 -44855465 + L2c LINE L2 3045 3149 -226 1 1172 335 215 29 3 chr11 76988634 76988719 -44855137 + B4 SINE B4 3 96 -69 1 1172 255 259 0 0 chr11 76988719 76988777 -44855079 + GA-rich Low_complexity Low_complexity 1 58 0 1 1172 792 272 28 65 chr11 76988779 76988995 -44854861 + B4 SINE B4 84 291 -1 1 1172 640 212 17 8 chr11 76989051 76989170 -44854686 + PB1D7 SINE Alu 1 120 0 1 1172 358 238 0 101 chr11 76989262 76989351 -44854505 + ID SINE ID 3 82 -142 1 1172 706 133 171 6 chr11 76989291 76989470 -44854386 - MTC LTR MaLR -206 201 1 1 1172 546 227 124 14 chr11 76989961 76990140 -44853716 - B3A SINE B2 -7 188 2 1 1172 362 225 0 53 chr11 76990379 76990454 -44853402 - PB1D7 SINE Alu -47 73 3 1 1172 975 131 101 0 chr11 76990501 76990669 -44853187 + ORR1B1 LTR MaLR 210 394 0 1 1172 3195 231 180 123 chr11 76990669 76990719 -44853137 + ORR1B1-int LTR MaLR 1 56 -1907 1 1172 243 0 0 0 chr11 76990719 76990746 -44853110 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1172 3195 231 180 123 chr11 76990746 76991488 -44852368 + ORR1B1-int LTR MaLR 57 865 -1098 1 1172 1397 83 72 0 chr11 76991488 76991669 -44852187 - B2_Mm2 SINE B2 -1 194 1 1 1172 4201 173 76 66 chr11 76991669 76992733 -44851123 + ORR1B1-int LTR MaLR 625 1961 -2 1 1172 2007 131 125 0 chr11 76992733 76993076 -44850780 + ORR1B1 LTR MaLR 1 386 -8 1 1172 185 395 55 0 chr11 76993215 76993324 -44850532 - L2c LINE L2 -195 3192 3078 1 1172 782 59 246 0 chr11 76993943 76994061 -44849795 - B1_Mus1 SINE Alu -1 147 1 1 1172 278 192 25 0 chr11 76995188 76995245 -44848611 - PB1D7 SINE Alu -88 60 1 1 1172 760 270 41 21 chr11 76996422 76996629 -44847227 + B3A SINE B2 3 205 -11 1 1172 1166 276 47 63 chr11 76997334 76997760 -44846096 + MTD LTR MaLR 1 419 0 1 1172 267 31 0 0 chr11 76997794 76997826 -44846030 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1172 38 22 0 0 chr11 76997828 76997873 -44845983 + AT_rich Low_complexity Low_complexity 1 45 0 1 1172 22 0 0 0 chr11 76997953 76997975 -44845881 + AT_rich Low_complexity Low_complexity 1 22 0 1 1172 1728 31 0 5 chr11 76998045 76998237 -44845619 - B2_Mm2 SINE B2 -2 193 3 1 1172 677 264 13 0 chr11 76998477 76998636 -44845220 + MER58B DNA MER1_type 108 268 -73 1 1172 866 218 167 6 chr11 76998911 76999091 -44844765 + B3 SINE B2 2 210 -6 1 1172 625 271 13 34 chr11 76999130 76999279 -44844577 - B1F1 SINE Alu -3 146 1 1 1172 254 266 62 0 chr11 76999516 76999580 -44844276 - ID4 SINE ID -15 68 1 1 1172 486 300 81 65 chr11 76999607 76999718 -44844138 - Lx8 LINE L1 -2 7471 7369 1 1172 1169 69 7 0 chr11 76999718 76999862 -44843994 - B1_Mus1 SINE Alu -1 147 3 1 1172 486 300 81 65 chr11 76999862 76999996 -44843860 - Lx8 LINE L1 -105 7368 7222 1 1172 757 167 280 0 chr11 77000003 77000171 -44843685 + B3 SINE B2 2 216 0 1 1172 291 213 0 0 chr11 77000178 77000239 -44843617 - Lx8 LINE L1 -235 7238 7178 2 1172 374 370 62 33 chr11 77000336 77000791 -44843065 + L1M5 LINE L1 4045 4512 -1634 3 1172 301 346 19 0 chr11 77000847 77000951 -44842905 + L1M5 LINE L1 4918 5023 -1123 3 1172 911 159 7 0 chr11 77000959 77001097 -44842759 + B1_Mur1 SINE Alu 6 144 -5 4 1172 909 150 14 0 chr11 77001389 77001536 -44842320 - B1_Mur2 SINE Alu 0 149 1 5 1172 384 248 53 15 chr11 77001657 77001779 -44842077 + B1_Mus2 SINE Alu 1 120 0 6 1172 281 274 20 50 chr11 77001857 77001957 -44841899 + RSINE1 SINE B4 64 160 -5 7 1172 394 261 96 54 chr11 77002817 77002983 -44840873 + B3A SINE B2 8 180 -18 8 1172 291 54 0 0 chr11 77003334 77003371 -44840485 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 9 1172 26 0 0 0 chr11 77004333 77004359 -44839497 + AT_rich Low_complexity Low_complexity 1 26 0 1 1172 232 203 16 0 chr11 77004519 77004583 -44839273 - L1M5 LINE L1 -373 5789 5725 1 1172 577 284 52 0 chr11 77004717 77004851 -44839005 - RSINE1 SINE B4 -23 142 2 1 1172 817 246 23 28 chr11 77005018 77005235 -44838621 + B3 SINE B2 1 216 0 1 1172 657 298 31 59 chr11 77005237 77005497 -44838359 + MLT1A1 LTR MaLR 142 379 -11 1 1172 441 0 0 0 chr11 77005509 77005558 -44838298 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1172 1120 58 0 0 chr11 77005623 77005760 -44838096 + B1_Mus1 SINE Alu 3 139 -9 1 1172 650 13 13 0 chr11 77005760 77005839 -44838017 + (GAA)n Simple_repeat Simple_repeat 2 81 0 1 1172 1914 108 3 3 chr11 77005839 77006128 -44837728 + Lx LINE L1 6364 6652 -2 1 1172 1021 73 81 0 chr11 77006568 77006704 -44837152 + B1_Mus1 SINE Alu 2 148 0 1 1172 758 143 8 0 chr11 77006704 77006837 -44837019 + GA-rich Low_complexity Low_complexity 3 136 0 2 1172 772 254 94 78 chr11 77007142 77007514 -44836342 + MTE2a LTR MaLR 2 379 0 2 1172 306 0 0 0 chr11 77007565 77007599 -44836257 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1172 183 383 0 0 chr11 77008078 77008138 -44835718 - L2a LINE L2 -7 3419 3360 2 1172 24 0 0 0 chr11 77008195 77008219 -44835637 + AT_rich Low_complexity Low_complexity 1 24 0 2 1172 809 188 13 46 chr11 77008325 77008476 -44835380 + B1_Mur1 SINE Alu 3 148 -1 2 1172 206 327 18 35 chr11 77008548 77008662 -44835194 + GA-rich Low_complexity Low_complexity 5 116 0 2 1172 231 114 0 0 chr11 77009456 77009491 -44834365 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1172 426 299 0 58 chr11 77010047 77010203 -44833653 + RSINE1 SINE B4 2 148 -17 2 1172 1004 269 75 26 chr11 77010251 77010636 -44833220 + Lx7 LINE L1 6980 7383 -313 2 1172 221 254 0 0 chr11 77010637 77010700 -44833156 + T-rich Low_complexity Low_complexity 1 63 0 3 1172 330 283 68 62 chr11 77010895 77011057 -44832799 + Lx8 LINE L1 6109 6271 -1202 3 1172 556 250 85 23 chr11 77011086 77011262 -44832594 + B3A SINE B2 5 191 -7 3 1172 1149 42 35 0 chr11 77011365 77011508 -44832348 + B1_Mus1 SINE Alu 1 148 0 3 1172 1649 68 17 8 chr11 77012163 77012400 -44831456 + Lx2B LINE L1 6759 6997 -3 3 1172 228 264 0 0 chr11 77013408 77013495 -44830361 + CT-rich Low_complexity Low_complexity 3 89 0 3 1172 284 284 31 31 chr11 77013506 77013604 -44830252 + CT-rich Low_complexity Low_complexity 5 102 0 3 1172 242 157 57 0 chr11 77013752 77013822 -44830034 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1172 438 239 0 41 chr11 77013904 77014026 -44829830 + PB1D10 SINE Alu 1 117 0 3 1172 201 74 0 0 chr11 77014607 77014634 -44829222 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 1172 541 222 9 0 chr11 77014676 77014784 -44829072 - PB1D10 SINE Alu -8 109 1 3 1172 350 260 31 0 chr11 77015127 77015223 -44828633 + PB1D10 SINE Alu 14 112 -5 4 1172 27 29 0 0 chr11 77015881 77015915 -44827941 + AT_rich Low_complexity Low_complexity 1 34 0 4 1172 826 295 14 0 chr11 77015930 77016140 -44827716 + B3 SINE B2 3 215 -1 4 1172 4721 33 0 5 chr11 77016336 77016890 -44826966 - L1Md_F2 LINE L1 -12 6570 6020 4 1172 211 259 152 36 chr11 77016946 77017058 -44826798 - MIR SINE MIR -89 179 55 4 1172 255 229 0 0 chr11 77017334 77017395 -44826461 + (TATG)n Simple_repeat Simple_repeat 3 63 0 4 1172 611 310 17 122 chr11 77017406 77017700 -44826156 + MER21B LTR ERV1 39 301 -562 4 1172 747 273 184 17 chr11 77017724 77018018 -44825838 + MER21B LTR ERV1 412 754 -109 4 1172 1038 242 195 20 chr11 77018190 77018544 -44825312 - MTD LTR MaLR -3 416 1 4 1172 307 306 51 6 chr11 77018628 77018786 -44825070 + Lx6 LINE L1 7269 7433 -27 4 1172 226 358 43 33 chr11 77018798 77019009 -44824847 + L1MEg LINE L1 937 1149 -5093 4 1172 1133 62 7 0 chr11 77019009 77019155 -44824701 + B1_Mus2 SINE Alu 1 147 0 5 1172 180 0 0 0 chr11 77019155 77019175 -44824681 + (CAAAAA)n Simple_repeat Simple_repeat 6 25 0 5 1172 305 264 105 94 chr11 77019223 77019379 -44824477 + L1MEg LINE L1 1200 1351 -4891 4 1172 967 150 0 0 chr11 77019379 77019519 -44824337 + B1_Mur2 SINE Alu 2 141 -8 5 1172 423 119 0 0 chr11 77019526 77019593 -44824263 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 5 1172 305 264 105 94 chr11 77019593 77019695 -44824161 + L1MEg LINE L1 1352 1469 -4773 4 1172 183 42 0 0 chr11 77019696 77019720 -44824136 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1172 1127 197 121 0 chr11 77019749 77019988 -44823868 + RMER1B Other Other 491 758 -308 5 1172 351 265 24 0 chr11 77019988 77020071 -44823785 + PB1 SINE Alu 41 125 -2 5 1172 448 315 15 23 chr11 77020153 77020283 -44823573 + RSINE1 SINE B4 36 164 -1 5 1172 317 256 116 31 chr11 77020335 77020464 -44823392 + L1MEg LINE L1 2243 2382 -3764 4 1172 329 211 0 78 chr11 77020797 77020874 -44822982 + B4A SINE B4 82 152 -140 5 1172 565 103 144 0 chr11 77020816 77020913 -44822943 + PB1D9 SINE Alu 10 120 0 5 1172 198 0 0 0 chr11 77020913 77020935 -44822921 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1172 307 264 68 11 chr11 77021467 77021555 -44822301 - RMER15 LTR ERVL 0 575 483 6 1172 1852 157 125 30 chr11 77021558 77021919 -44821937 + MTD LTR MaLR 1 395 -24 6 1172 2276 302 127 16 chr11 77022349 77023816 -44820040 - RMER15-int LTR ERVL -3367 1632 4 6 1172 741 313 76 105 chr11 77023819 77024278 -44819578 - RMER15 LTR ERVL 0 575 2 6 1172 1015 201 45 0 chr11 77024403 77024602 -44819254 - B3 SINE B2 -7 209 2 6 1172 25 75 0 0 chr11 77025657 77025710 -44818146 + AT_rich Low_complexity Low_complexity 1 53 0 6 1172 435 323 39 0 chr11 77025753 77025883 -44817973 + ID_B1 SINE B4 77 211 -13 6 1172 514 285 7 0 chr11 77026343 77026483 -44817373 + ID_B1 SINE B4 87 223 -1 6 1172 227 179 36 0 chr11 77026849 77026905 -44816951 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 6 1172 336 48 0 0 chr11 77026908 77026950 -44816906 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 6 1172 393 268 156 8 chr11 77027013 77027141 -44816715 + RSINE1 SINE B4 2 148 -17 6 1172 492 293 164 11 chr11 77027203 77027333 -44816523 + B4 SINE B4 82 229 -63 7 1172 261 0 0 0 chr11 77027333 77027362 -44816494 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1172 492 293 164 11 chr11 77027362 77027414 -44816442 + B4 SINE B4 230 291 -1 7 1172 326 273 256 18 chr11 77027874 77028038 -44815818 - MIRb SINE MIR -52 216 14 7 1172 23 0 0 0 chr11 77029642 77029665 -44814191 + GC_rich Low_complexity Low_complexity 1 23 0 7 1172 279 0 0 0 chr11 77030203 77030234 -44813622 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1172 372 317 193 24 chr11 77031288 77031537 -44812319 + L3 LINE CR1 4194 4484 -5 7 1172 186 71 0 0 chr11 77032335 77032363 -44811493 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 7 1172 958 206 194 25 chr11 77032518 77032842 -44811014 + MTEb LTR MaLR 1 379 0 7 1172 472 328 0 48 chr11 77033104 77033290 -44810566 - MIR SINE MIR -33 229 53 7 1172 898 241 15 15 chr11 77033845 77034047 -44809809 + B3 SINE B2 15 216 0 7 1172 2074 274 42 17 chr11 77034216 77034998 -44808858 - L1MA5 LINE L1 0 6300 5499 8 1172 387 225 225 0 chr11 77035029 77035189 -44808667 - L1MA8 LINE L1 -29 6262 6067 8 1172 432 0 0 0 chr11 77035784 77035832 -44808024 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1172 463 246 92 0 chr11 77035915 77036045 -44807811 + B1F SINE Alu 1 142 -7 8 1172 292 345 9 26 chr11 77036262 77036375 -44807481 + PB1D10 SINE Alu 7 117 0 8 1172 21 0 0 0 chr11 77036393 77036414 -44807442 + AT_rich Low_complexity Low_complexity 1 21 0 8 1172 775 170 277 0 chr11 77037111 77037270 -44806586 + B3 SINE B2 1 203 -13 8 1172 626 329 0 0 chr11 77037319 77037477 -44806379 - RSINE1 SINE B4 -6 159 2 8 1172 396 0 0 0 chr11 77037776 77037820 -44806036 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1172 585 350 49 42 chr11 77037994 77038400 -44805456 - L1MC LINE L1 -2123 5759 5351 8 1172 507 255 273 0 chr11 77038415 77038576 -44805280 + ID_B1 SINE B4 3 207 -17 9 1172 279 245 0 41 chr11 77038616 77038714 -44805142 - L1MB7 LINE L1 -16 6168 6075 9 1172 695 299 157 33 chr11 77038889 77039295 -44804561 + L2c LINE L2 2914 3367 -20 9 1172 235 190 0 23 chr11 77039562 77039605 -44804251 - BC1_Mm scRNA scRNA -96 56 15 9 1172 590 253 121 66 chr11 77039694 77039876 -44803980 + B4A SINE B4 97 288 -4 9 1172 225 0 0 0 chr11 77040153 77040178 -44803678 + (TTAG)n Simple_repeat Simple_repeat 2 26 0 9 1172 618 301 44 0 chr11 77040192 77040328 -44803528 - RSINE1 SINE B4 -22 143 2 9 1172 208 135 0 0 chr11 77040515 77040552 -44803304 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 9 1172 369 0 0 0 chr11 77041293 77041334 -44802522 + (TA)n Simple_repeat Simple_repeat 2 42 0 9 1172 461 333 16 0 chr11 77041374 77041503 -44802353 - ID_B1 SINE B4 -22 202 72 9 1172 265 259 93 55 chr11 77041669 77041826 -44802030 - MIR SINE MIR -46 230 57 1 1172 28 48 0 0 chr11 77041919 77041961 -44801895 + AT_rich Low_complexity Low_complexity 1 42 0 1 1172 1079 182 44 0 chr11 77041961 77042164 -44801692 - B3 SINE B2 -4 212 1 1 1172 247 125 35 35 chr11 77042256 77042314 -44801542 + CT-rich Low_complexity Low_complexity 2 59 0 1 1172 833 200 7 0 chr11 77042322 77042462 -44801394 - B1_Mur2 SINE Alu -7 142 2 1 1172 644 244 53 0 chr11 77043071 77043202 -44800654 + B3A SINE B2 3 140 -58 1 1172 25 0 0 0 chr11 77043217 77043242 -44800614 + AT_rich Low_complexity Low_complexity 1 25 0 1 1172 930 192 62 0 chr11 77043299 77043476 -44800380 + B3 SINE B2 2 189 -27 1 1172 186 71 0 0 chr11 77043477 77043505 -44800351 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1172 488 259 34 34 chr11 77043611 77043759 -44800097 - B1F SINE Alu -1 148 1 1 1172 196 312 339 6 chr11 77043958 77044135 -44799721 + MIRb SINE MIR 3 242 -26 1 1172 640 84 138 0 chr11 77044732 77044876 -44798980 + Lx3_Mus LINE L1 6784 6979 -2 1 1172 394 312 62 0 chr11 77045168 77045296 -44798560 - B1F SINE Alu -13 136 1 1 1172 756 238 169 9 chr11 77045463 77045688 -44798168 - RCHARR1 DNA MER1_type -191 783 523 1 1172 2730 113 69 7 chr11 77045688 77046108 -44797748 - Lx4A LINE L1 0 7058 6613 1 1172 878 256 60 42 chr11 77046863 77047128 -44796728 - B4A SINE B4 -22 270 1 1 1172 465 255 52 58 chr11 77047133 77047287 -44796569 - ID_B1 SINE B4 -3 221 69 1 1172 211 316 123 25 chr11 77047307 77047335 -44796521 - ID_B1 SINE B4 -128 96 8 1 1172 241 189 189 0 chr11 77047335 77047388 -44796468 - ID4 SINE ID -13 70 8 1 1172 367 289 124 31 chr11 77047726 77047887 -44795969 - MER102c DNA MER1_type 0 331 156 1 1172 243 0 0 0 chr11 77048953 77048980 -44794876 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1172 519 204 229 18 chr11 77049125 77049295 -44794561 + B3 SINE B2 1 206 -10 1 1172 24 0 0 0 chr11 77049299 77049323 -44794533 + AT_rich Low_complexity Low_complexity 1 24 0 1 1172 728 234 40 0 chr11 77049517 77049692 -44794164 - B3A SINE B2 -16 182 1 1 1172 926 235 14 43 chr11 77049821 77050030 -44793826 - B3 SINE B2 0 216 14 1 1172 28 29 0 0 chr11 77050143 77050178 -44793678 + AT_rich Low_complexity Low_complexity 1 35 0 1 1172 330 157 0 0 chr11 77050198 77050249 -44793607 + B1F2 SINE Alu 3 53 -96 1 1172 567 211 113 0 chr11 77050357 77050490 -44793366 - B1_Mur1 SINE Alu 0 149 2 1 1172 457 222 33 0 chr11 77051763 77051853 -44792003 + B3 SINE B2 1 93 -123 1 1172 264 214 94 12 chr11 77052009 77052094 -44791762 - MER103 DNA DNA 0 166 75 1 1172 603 235 50 0 chr11 77052087 77052206 -44791650 + B3 SINE B2 58 182 -34 1 1172 2122 115 38 0 chr11 77052208 77052522 -44791334 + Lx2B LINE L1 6675 7000 0 1 1172 494 226 158 21 chr11 77052528 77052718 -44791138 + B3 SINE B2 1 216 0 1 1172 236 258 32 0 chr11 77052816 77052878 -44790978 - PB1D10 SINE Alu -20 97 34 1 1172 724 312 51 45 chr11 77052908 77053243 -44790613 - MLT1A0 LTR MaLR -2 363 27 1 1172 225 0 0 0 chr11 77053701 77053726 -44790130 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1172 1098 48 0 52 chr11 77053736 77053891 -44789965 - B1_Mus1 SINE Alu 0 148 2 1 1172 4436 100 77 26 chr11 77053891 77054570 -44789286 - RMER19A LTR ERVK -19 718 1 1 1172 253 228 95 18 chr11 77054814 77054921 -44788935 + PB1D7 SINE Alu 3 119 -1 1 1172 1043 216 16 0 chr11 77055322 77055507 -44788349 - B3 SINE B2 -28 188 1 1 1172 417 241 66 46 chr11 77055619 77055771 -44788085 - MIR SINE MIR 0 262 108 1 1172 247 39 0 88 chr11 77056308 77056365 -44787491 - L1Md_F3 LINE L1 -2 6582 6531 1 1172 225 253 98 11 chr11 77057221 77057313 -44786543 + MTEa LTR MaLR 272 371 -8 1 1172 675 223 91 25 chr11 77057338 77057536 -44786320 + B3 SINE B2 1 211 -5 1 1172 413 291 50 62 chr11 77057621 77057782 -44786074 - MTEa LTR MaLR -196 183 25 1 1172 772 284 45 0 chr11 77057813 77058014 -44785842 + B3 SINE B2 1 210 -6 1 1172 267 302 142 18 chr11 77058065 77058284 -44785572 + L1M5 LINE L1 5330 5575 -549 1 1172 32 57 0 0 chr11 77058625 77058678 -44785178 + AT_rich Low_complexity Low_complexity 1 53 0 1 1172 477 282 17 25 chr11 77058849 77058969 -44784887 + PB1 SINE Alu 6 124 -3 1 1172 773 223 8 0 chr11 77058999 77059129 -44784727 + B1_Mur1 SINE Alu 2 132 -17 1 1172 386 309 7 75 chr11 77059000 77059147 -44784709 + ID_B1 SINE B4 84 220 -4 1 1172 376 342 59 83 chr11 77059129 77059202 -44784654 + MT2B LTR ERVL 165 362 -239 1 1172 1650 31 0 0 chr11 77059496 77059688 -44784168 - B2_Mm1t SINE B2 0 193 2 1 1172 866 155 0 8 chr11 77060203 77060333 -44783523 - B1_Mur2 SINE Alu -20 129 1 1 1172 325 272 135 90 chr11 77060333 77060451 -44783405 - MT2B LTR ERVL -449 152 25 1 1172 304 284 57 0 chr11 77060390 77060478 -44783378 - B4A SINE B4 -195 97 5 1 1172 740 226 135 16 chr11 77060496 77060689 -44783167 - B3 SINE B2 0 216 1 1 1172 924 307 66 0 chr11 77060719 77061006 -44782850 - MER21B LTR ERV1 -556 307 2 1 1172 1286 7 0 20 chr11 77061437 77061587 -44782269 - B1_Mm SINE Alu 0 147 1 1 1172 255 314 46 67 chr11 77062258 77062497 -44781359 - L2 LINE L2 -1492 1927 1694 1 1172 576 242 114 8 chr11 77063333 77063579 -44780277 - MT2A LTR ERVL -3 598 200 1 1172 811 193 74 12 chr11 77063928 77064091 -44779765 - MT2A LTR ERVL -359 174 2 1 1172 1360 85 11 0 chr11 77064449 77064637 -44779219 - B2_Mm1t SINE B2 -3 190 1 1 1172 1848 237 39 104 chr11 77064649 77065402 -44778454 + RMER1C Other Other 638 1341 -1 1 1172 352 0 20 20 chr11 77065519 77065568 -44778288 + (TTTTA)n Simple_repeat Simple_repeat 3 51 0 1 1172 1004 246 114 67 chr11 77065630 77065991 -44777865 + MTE2a LTR MaLR 2 379 0 1 1172 243 347 24 12 chr11 77066264 77066370 -44777486 + MIR SINE MIR 8 116 -146 1 1172 690 258 25 64 chr11 77066512 77066715 -44777141 + B3A SINE B2 4 198 0 1 1172 213 330 56 11 chr11 77066975 77067064 -44776792 + MIRc SINE MIR 46 138 -130 1 1172 1266 97 37 11 chr11 77067085 77067272 -44776584 - B2_Mm2 SINE B2 -3 192 1 1 1172 465 267 29 0 chr11 77067442 77067547 -44776309 - ID_B1 SINE B4 -21 203 96 1 1172 187 164 16 16 chr11 77067567 77067629 -44776227 + T-rich Low_complexity Low_complexity 2 63 0 1 1172 357 24 0 0 chr11 77067979 77068021 -44775835 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1172 247 259 195 23 chr11 77068044 77068131 -44775725 - B1F2 SINE Alu -41 106 5 1 1172 275 320 13 0 chr11 77068365 77068443 -44775413 - ID4_ SINE ID 0 83 5 1 1172 303 295 0 28 chr11 77068462 77068570 -44775286 - PB1D10 SINE Alu -8 109 5 1 1172 249 180 0 0 chr11 77068584 77068634 -44775222 + CT-rich Low_complexity Low_complexity 2 51 0 1 1172 3544 18 0 0 chr11 77068647 77069043 -44774813 + MTA_Mm LTR MaLR 1 396 0 1 1172 9114 36 2 4 chr11 77069043 77070143 -44773713 + MTA_Mm-int LTR MaLR 1 1098 0 1 146 3544 18 0 0 chr11 77070143 77070539 -44773317 + MTA_Mm LTR MaLR 1 396 0 1 1173 254 174 0 21 chr11 77070539 77070586 -44773270 + CT-rich Low_complexity Low_complexity 1 46 0 1 1173 504 202 119 0 chr11 77070599 77070708 -44773148 - B1_Mur2 SINE Alu -21 128 7 1 1173 570 256 40 40 chr11 77070739 77070991 -44772865 - L1_Mur3 LINE L1 -473 5407 5156 1 1173 835 291 67 25 chr11 77070987 77071461 -44772395 + Lx9 LINE L1 5377 5904 -1740 1 1173 180 0 0 0 chr11 77071741 77071761 -44772095 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 1 1173 1642 74 0 84 chr11 77071761 77072012 -44771844 - L1_Mus2 LINE L1 -2 6564 6335 1 1173 1307 65 0 0 chr11 77072012 77072180 -44771676 + L1_Mus2 LINE L1 6161 6328 -238 1 1173 382 275 0 18 chr11 77073390 77073501 -44770355 + PB1D10 SINE Alu 1 109 -8 1 1173 246 265 14 14 chr11 77073523 77073592 -44770264 + ID4_ SINE ID 2 70 -13 1 1173 1467 248 80 14 chr11 77073644 77074148 -44769708 + Lx6 LINE L1 6839 7441 -19 1 1173 25 0 0 0 chr11 77074434 77074459 -44769397 + AT_rich Low_complexity Low_complexity 1 25 0 1 1173 1396 136 23 0 chr11 77074653 77074873 -44768983 - URR1B DNA MER1_type 0 225 1 1 1173 1337 99 5 0 chr11 77075297 77075488 -44768368 - B2_Mm1t SINE B2 0 193 2 1 1173 246 62 0 0 chr11 77075542 77075574 -44768282 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1 1173 7804 148 26 8 chr11 77075574 77076911 -44766945 - Lx5 LINE L1 -16 7034 5674 1 1173 916 215 44 5 chr11 77076911 77077117 -44766739 + B3 SINE B2 2 215 -1 1 1173 693 240 39 48 chr11 77077210 77077415 -44766441 - MT2A LTR ERVL -285 208 1 1 1173 211 392 49 43 chr11 77077488 77077672 -44766184 - B3A SINE B2 -3 195 11 1 1173 691 287 12 48 chr11 77077512 77077677 -44766179 - RSINE1 SINE B4 0 165 7 1 1173 29 22 0 21 chr11 77077696 77077707 -44766149 + AT_rich Low_complexity Low_complexity 1 11 0 1 1173 2847 32 6 9 chr11 77077707 77078053 -44765803 - L1_Mus1 LINE L1 -1 6566 6222 1 1173 29 22 0 21 chr11 77078053 77078088 -44765768 + AT_rich Low_complexity Low_complexity 1 35 0 1 1173 520 205 25 33 chr11 77079870 77079991 -44763865 - ID_B1 SINE B4 -2 222 103 1 1173 279 322 31 69 chr11 77079916 77080046 -44763810 - B1F1 SINE Alu -22 127 3 1 1173 217 231 11 0 chr11 77081893 77081946 -44761910 - PB1D9 SINE Alu -7 142 76 1 1173 471 205 3 6 chr11 77081988 77082079 -44761777 - B1_Mus1 SINE Alu -46 103 15 2 1173 240 371 72 50 chr11 77082079 77082127 -44761729 - B4A SINE B4 -100 192 51 2 1173 323 154 15 0 chr11 77082290 77082355 -44761501 + CT-rich Low_complexity Low_complexity 4 69 0 2 1173 439 271 240 0 chr11 77082751 77082880 -44760976 - RSINE1 SINE B4 -3 162 3 2 1173 328 91 0 0 chr11 77082891 77082946 -44760910 - Lx LINE L1 -5 6649 6595 2 1173 1191 40 136 0 chr11 77082946 77083123 -44760733 - Lx LINE L1 -252 6402 6202 2 1173 248 293 54 116 chr11 77083140 77083252 -44760604 - MER5A DNA MER1_type -83 106 2 2 1173 189 0 0 0 chr11 77083483 77083504 -44760352 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1173 341 321 19 9 chr11 77083521 77083628 -44760228 - RSINE1 SINE B4 -15 150 43 2 1173 2034 105 0 16 chr11 77083741 77084050 -44759806 - Lx LINE L1 0 6654 6351 2 1173 355 284 24 112 chr11 77085073 77085279 -44758577 + MLT1D LTR MaLR 1 188 -317 2 1173 371 320 89 8 chr11 77085285 77085408 -44758448 + B1F SINE Alu 4 136 -13 2 1173 564 199 88 53 chr11 77085546 77085716 -44758140 - MLT1B LTR MaLR -52 338 163 2 1173 402 308 20 20 chr11 77085776 77085925 -44757931 - B1F1 SINE Alu 0 149 1 2 1173 286 339 16 94 chr11 77085925 77085966 -44757890 - B4 SINE B4 -206 86 56 2 1173 499 203 106 19 chr11 77085968 77086129 -44757727 + L1MB2 LINE L1 5954 6128 -43 2 1173 981 300 34 13 chr11 77086173 77086406 -44757450 + B4 SINE B4 48 285 -7 2 1173 486 273 21 21 chr11 77086540 77086682 -44757174 + B1F1 SINE Alu 1 142 -7 2 1173 5600 210 85 41 chr11 77086793 77088479 -44755377 - Lx9 LINE L1 -7 7637 5796 2 1173 877 200 57 33 chr11 77088965 77089177 -44754679 - MT2B LTR ERVL 0 601 385 2 1173 235 204 0 39 chr11 77089283 77089334 -44754522 + GA-rich Low_complexity Low_complexity 4 52 0 2 1173 294 311 0 22 chr11 77089487 77089579 -44754277 + GA-rich Low_complexity Low_complexity 3 92 0 2 1173 24 67 0 0 chr11 77090415 77090460 -44753396 + AT_rich Low_complexity Low_complexity 1 45 0 2 1173 23 0 0 0 chr11 77090536 77090559 -44753297 + AT_rich Low_complexity Low_complexity 1 23 0 2 1173 3052 84 11 16 chr11 77091823 77092271 -44751585 + L1_Mus4 LINE L1 5763 6208 -428 2 1173 372 318 56 0 chr11 77092901 77093008 -44750848 - B1F SINE Alu -17 132 20 2 1173 478 265 19 10 chr11 77093057 77093160 -44750696 + RSINE1 SINE B4 35 138 -27 2 1173 828 100 0 0 chr11 77093162 77093282 -44750574 + (CA)n Simple_repeat Simple_repeat 2 121 0 2 1173 1043 239 9 5 chr11 77093331 77093545 -44750311 - ID_B1 SINE B4 -7 217 3 2 1173 311 268 14 0 chr11 77093697 77093768 -44750088 + ID4_ SINE ID 5 76 -7 2 1173 224 256 95 14 chr11 77094001 77094111 -44749745 - L2c LINE L2 0 3426 3306 2 1173 28 0 0 0 chr11 77095068 77095096 -44748760 + AT_rich Low_complexity Low_complexity 1 28 0 2 1173 246 81 0 0 chr11 77095435 77095472 -44748384 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1173 253 231 77 0 chr11 77095479 77095544 -44748312 - ID2 SINE ID -11 72 3 2 1173 1672 165 111 12 chr11 77095849 77096181 -44747675 - ORR1B2 LTR MaLR 0 367 3 2 1173 2169 103 71 6 chr11 77096183 77096533 -44747323 - ORR1B2-int LTR MaLR 0 1509 1137 2 1173 2433 188 98 11 chr11 77096548 77097272 -44746584 - Lx4B LINE L1 0 7000 6180 2 1173 4834 153 100 63 chr11 77097272 77097486 -44746370 - ORR1B1-int LTR MaLR -346 1163 886 2 1173 2360 101 73 13 chr11 77097486 77097867 -44745989 - Lx LINE L1 -2 6652 6249 2 1173 4834 153 100 63 chr11 77097867 77098682 -44745174 - ORR1B1-int LTR MaLR -624 885 84 2 1173 676 12 0 0 chr11 77098682 77098767 -44745089 + L1Md_T LINE L1 6498 6582 0 2 1173 4834 153 100 63 chr11 77098767 77098850 -44745006 - ORR1B1-int LTR MaLR -1426 83 9 2 1173 225 178 44 0 chr11 77098842 77098887 -44744969 + ORR1C1 LTR MaLR 332 378 0 2 1173 313 295 30 102 chr11 77099424 77099590 -44744266 + MER5B DNA MER1_type 23 176 -2 2 1173 6298 41 0 0 chr11 77100022 77100772 -44743084 - L1Md_F2 LINE L1 -8 6574 5825 2 1173 391 227 566 5 chr11 77101217 77101434 -44742422 - ORR1E LTR MaLR -1 378 40 2 1173 356 261 6 0 chr11 77101585 77101742 -44742114 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1173 725 172 0 62 chr11 77101847 77101977 -44741879 + B3A SINE B2 1 122 -76 2 1173 270 324 77 65 chr11 77101977 77102002 -44741854 + ID_B1 SINE B4 1 157 -67 2 1173 223 277 293 35 chr11 77102012 77102128 -44741728 + MIRb SINE MIR 56 201 -67 2 1173 508 279 57 8 chr11 77102150 77102273 -44741583 + RSINE1 SINE B4 1 129 -36 2 1173 450 282 0 0 chr11 77102574 77102677 -44741179 + PB1D10 SINE Alu 9 111 -6 2 1173 231 145 83 83 chr11 77102790 77102850 -44741006 - Charlie16a DNA MER1_type -233 109 50 2 1173 186 71 0 0 chr11 77103028 77103056 -44740800 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1173 1095 83 0 14 chr11 77103058 77103205 -44740651 - B1_Mus2 SINE Alu -1 146 2 2 1173 243 61 0 0 chr11 77103353 77103386 -44740470 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 2 1173 29 0 0 0 chr11 77104018 77104047 -44739809 + AT_rich Low_complexity Low_complexity 1 29 0 2 1173 1938 128 0 3 chr11 77104050 77104348 -44739508 - Lx2B LINE L1 -1 6999 6703 2 1173 288 312 183 25 chr11 77104511 77104790 -44739066 - L2a LINE L2 -2 3424 3102 2 1173 184 329 108 14 chr11 77104773 77104847 -44739009 - MIRc SINE MIR -148 120 40 2 1173 1208 195 10 0 chr11 77106028 77106233 -44737623 + B3 SINE B2 2 208 -8 2 1173 298 312 44 44 chr11 77106254 77106342 -44737514 + ID_B1 SINE B4 82 171 -53 2 1173 288 0 0 0 chr11 77106342 77106374 -44737482 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1173 298 312 44 44 chr11 77106374 77106399 -44737457 + ID_B1 SINE B4 172 195 -29 2 1173 192 40 0 0 chr11 77106412 77106437 -44737419 + (CG)n Simple_repeat Simple_repeat 1 25 0 2 1173 285 29 0 0 chr11 77106437 77106470 -44737386 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1173 213 224 0 20 chr11 77106538 77106588 -44737268 - B1F SINE Alu -5 144 96 2 1173 201 213 0 0 chr11 77107702 77107749 -44736107 + GA-rich Low_complexity Low_complexity 1 47 0 2 1173 253 238 16 0 chr11 77107786 77107849 -44736007 + GA-rich Low_complexity Low_complexity 1 64 0 2 1173 1572 32 27 0 chr11 77108380 77108567 -44735289 - B2_Mm1a SINE B2 -1 192 1 2 1173 222 37 0 0 chr11 77109904 77109931 -44733925 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1173 362 299 95 81 chr11 77109943 77109971 -44733885 + B3 SINE B2 3 49 -167 2 1173 447 184 81 0 chr11 77109971 77110058 -44733798 + B1_Mus2 SINE Alu 10 103 -44 2 1173 362 299 95 81 chr11 77110058 77110154 -44733702 + B3 SINE B2 50 216 0 2 1173 1342 78 15 25 chr11 77110156 77110352 -44733504 + B2_Mm2 SINE B2 2 195 0 2 1173 287 317 39 19 chr11 77110389 77110492 -44733364 - ID_B1 SINE B4 -116 108 4 2 1173 566 221 9 9 chr11 77110512 77110626 -44733230 - PB1D10 SINE Alu -3 114 1 2 1173 248 368 80 75 chr11 77111082 77111534 -44732322 - L2b LINE L2 -5 3370 2917 2 1173 186 392 59 0 chr11 77111778 77111880 -44731976 + MIRb SINE MIR 89 196 -72 2 1173 2236 201 26 50 chr11 77112004 77112607 -44731249 - RMER1A Other Other -289 741 25 2 1173 3604 40 2 0 chr11 77112607 77113002 -44730854 - MTA_Mm LTR MaLR 0 396 1 2 1173 9580 39 4 7 chr11 77113002 77114104 -44729752 - MTA_Mm-int LTR MaLR 0 1098 1 2 1173 3479 43 13 0 chr11 77114104 77114495 -44729361 - MTA_Mm LTR MaLR 0 396 1 2 1173 800 236 20 40 chr11 77114495 77114520 -44729336 - RMER1A Other Other -1006 24 4 2 1173 1246 249 91 6 chr11 77115039 77115358 -44728498 + MTD LTR MaLR 74 419 0 2 1173 509 264 84 15 chr11 77115588 77115719 -44728137 - B1_Mur2 SINE Alu 0 149 10 2 1173 2138 162 106 44 chr11 77115735 77116168 -44727688 - RMER1B Other Other -3 1063 604 2 1173 28 61 0 0 chr11 77116239 77116288 -44727568 + AT_rich Low_complexity Low_complexity 1 49 0 2 1173 366 183 68 17 chr11 77116356 77116473 -44727383 - Lx9 LINE L1 0 7644 7522 2 1173 597 14 0 0 chr11 77116473 77116543 -44727313 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1173 226 196 0 0 chr11 77116548 77116594 -44727262 - Lx9 LINE L1 -179 7465 7420 2 1173 379 270 0 0 chr11 77116733 77116807 -44727049 - ID4_ SINE ID -8 75 2 2 1173 461 190 0 82 chr11 77116874 77117008 -44726848 - B1F2 SINE Alu 0 120 5 2 1173 585 213 34 47 chr11 77117022 77117170 -44726686 - B1F2 SINE Alu -1 148 3 2 1173 447 291 26 45 chr11 77117350 77117505 -44726351 + MTEb LTR MaLR 217 377 -2 2 1173 23 0 0 0 chr11 77117587 77117610 -44726246 + AT_rich Low_complexity Low_complexity 1 23 0 2 1173 321 312 0 0 chr11 77118159 77118239 -44725617 + ID4 SINE ID 2 81 -2 2 1173 649 228 163 32 chr11 77118330 77118520 -44725336 + B3 SINE B2 2 216 0 2 1173 837 19 0 10 chr11 77118526 77118630 -44725226 + B1_Mus2 SINE Alu 45 147 0 2 1173 578 332 33 43 chr11 77119576 77119608 -44724248 - B4 SINE B4 -62 230 164 2 1173 660 219 18 0 chr11 77119608 77119722 -44724134 - B1_Mur1 SINE Alu -33 116 1 2 1173 578 332 33 43 chr11 77119722 77119787 -44724069 - B4 SINE B4 -62 163 22 2 1173 274 275 42 42 chr11 77119724 77119796 -44724060 - ID4 SINE ID -3 80 9 2 1173 1643 42 10 26 chr11 77120051 77120246 -44723610 + B2_Mm2 SINE B2 2 193 -2 2 1173 493 221 0 21 chr11 77120637 77120734 -44723122 + B2_Mm2 SINE B2 1 95 -100 2 1173 468 0 0 0 chr11 77120734 77120786 -44723070 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1173 229 250 0 0 chr11 77121514 77121566 -44722290 + FAM SINE Alu 264 315 0 2 1173 676 236 28 0 chr11 77122677 77122821 -44721035 + B1_Mur1 SINE Alu 1 148 -1 2 1173 384 338 37 61 chr11 77122832 77122978 -44720878 + RSINE1 SINE B4 1 143 -22 2 1173 249 119 0 0 chr11 77122978 77123020 -44720836 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1173 384 338 37 61 chr11 77123020 77123037 -44720819 + RSINE1 SINE B4 144 160 -5 2 1173 264 59 0 0 chr11 77123037 77123071 -44720785 + (TAA)n Simple_repeat Simple_repeat 1 34 0 2 1173 910 209 0 0 chr11 77123083 77123231 -44720625 + B1_Mur4 SINE Alu 2 149 -1 2 1173 213 200 0 0 chr11 77123234 77123269 -44720587 + G-rich Low_complexity Low_complexity 4 38 0 3 1173 244 25 0 70 chr11 77123271 77123314 -44720542 + (GGAAA)n Simple_repeat Simple_repeat 1 40 0 3 1173 753 152 317 0 chr11 77123355 77123519 -44720337 - B3 SINE B2 0 216 1 3 1173 6644 68 16 0 chr11 77123548 77124353 -44719503 - Lx3_Mus LINE L1 0 7009 6192 3 1173 30 0 0 0 chr11 77124363 77124393 -44719463 + AT_rich Low_complexity Low_complexity 1 30 0 3 1173 2374 185 50 90 chr11 77124397 77124974 -44718882 + RMER1B Other Other 378 931 -135 3 1173 500 191 0 0 chr11 77124974 77125058 -44718798 - MTC LTR MaLR -241 180 97 3 1173 3647 192 42 15 chr11 77125073 77125791 -44718065 - Lx5 LINE L1 -6 7044 6308 3 1173 731 153 0 22 chr11 77125760 77125894 -44717962 + RMER1B Other Other 931 1061 -5 3 1173 726 296 26 21 chr11 77126028 77126218 -44717638 + ID_B1 SINE B4 2 192 -32 3 1173 315 269 15 0 chr11 77126737 77126804 -44717052 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 3 1173 266 338 13 76 chr11 77126804 77126893 -44716963 + BC1_Mm scRNA scRNA 7 152 0 3 1173 285 182 0 0 chr11 77126902 77126946 -44716910 + MamRep38 DNA hAT 78 121 -174 3 1173 246 330 68 0 chr11 77126967 77127055 -44716801 + MamRep38 DNA hAT 191 284 -11 3 1173 209 296 42 21 chr11 77127251 77127400 -44716456 + MIR SINE MIR 84 234 -34 3 1173 534 226 9 9 chr11 77127822 77127929 -44715927 - PB1D10 SINE Alu -8 109 3 3 1173 3353 129 19 39 chr11 77127929 77128495 -44715361 - RMER2 LTR ERV1 -12 555 1 3 1173 566 151 0 207 chr11 77128849 77128999 -44714857 - B1_Mus1 SINE Alu -20 128 10 3 1173 277 283 88 0 chr11 77129326 77129439 -44714417 + RMER15 LTR ERVL 363 485 -90 3 1173 189 107 0 0 chr11 77129710 77129738 -44714118 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 3 1173 238 245 75 0 chr11 77129938 77129991 -44713865 - ID4_ SINE ID -26 57 1 3 1173 444 224 102 17 chr11 77130006 77130124 -44713732 - B1F2 SINE Alu -9 140 13 3 1173 668 261 28 68 chr11 77130159 77130336 -44713520 + B3A SINE B2 3 172 -23 3 1173 533 317 201 6 chr11 77130651 77130986 -44712870 + MLT1G LTR MaLR 16 402 -153 3 1173 464 328 87 74 chr11 77131254 77131620 -44712236 - MLT2B3 LTR ERVL -164 390 20 3 1173 4265 129 55 39 chr11 77131991 77132735 -44711121 - RMER6A LTR ERVK 0 756 1 3 1173 196 53 53 0 chr11 77133331 77133369 -44710487 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1173 1238 41 0 27 chr11 77133524 77133665 -44710191 + B1_Mus1 SINE Alu 1 139 -9 3 1173 333 0 0 0 chr11 77133665 77133702 -44710154 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1173 358 311 40 60 chr11 77133839 77133889 -44709967 - RLTR15 LTR ERVK -67 292 242 3 1173 3706 20 2 0 chr11 77133889 77134284 -44709572 - MTA_Mm LTR MaLR 0 396 1 3 1173 358 311 40 60 chr11 77134284 77134483 -44709373 - RLTR15 LTR ERVK -118 241 48 3 1173 1168 239 137 54 chr11 77134762 77135112 -44708744 - MTEb LTR MaLR 0 379 1 3 1173 198 0 0 0 chr11 77135299 77135321 -44708535 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1173 903 213 43 66 chr11 77135429 77135640 -44708216 - B3 SINE B2 -8 208 3 3 1173 232 294 63 32 chr11 77135806 77135964 -44707892 + L1ME2z LINE L1 6282 6444 0 3 1173 733 235 80 25 chr11 77136267 77136292 -44707564 - B4A SINE B4 0 292 271 3 1173 375 78 0 0 chr11 77136292 77136343 -44707513 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1173 733 235 80 25 chr11 77136343 77136518 -44707338 - B4A SINE B4 -22 270 81 3 1173 1838 128 6 114 chr11 77136597 77136645 -44707211 - ORR1A4 LTR MaLR -8 321 288 3 1173 7197 30 1 0 chr11 77136645 77137435 -44706421 - L1Md_T LINE L1 0 6582 5792 3 1173 1838 128 6 114 chr11 77137435 77137746 -44706110 - ORR1A4 LTR MaLR -42 287 1 3 1173 1490 65 27 0 chr11 77138417 77138603 -44705253 - B2_Mm2 SINE B2 0 195 5 3 1173 4434 56 6 0 chr11 77138628 77139145 -44704711 - L1_Mus1 LINE L1 0 6567 6048 3 1173 602 260 130 0 chr11 77139268 77139414 -44704442 - RSINE1 SINE B4 0 165 1 3 1173 2089 202 66 29 chr11 77139507 77140021 -44703835 - Lx7 LINE L1 0 7696 7164 3 1173 570 95 16 86 chr11 77140033 77140177 -44703679 + ORR1B1 LTR MaLR 1 137 -257 3 1173 382 255 99 9 chr11 77140177 77140288 -44703568 - Lx7 LINE L1 -570 7126 7006 3 1173 1086 142 0 0 chr11 77140302 77140450 -44703406 + B1_Mur3 SINE Alu 2 149 0 3 1173 191 222 0 0 chr11 77140493 77140529 -44703327 + L2b LINE L2 3322 3357 -18 3 1173 1176 49 28 0 chr11 77141069 77141212 -44702644 - B1_Mus2 SINE Alu 0 147 1 3 1173 239 269 0 19 chr11 77141293 77141346 -44702510 + B1F SINE Alu 3 54 -95 3 1173 860 244 18 0 chr11 77141366 77141534 -44702322 + B3A SINE B2 2 172 -26 3 1173 946 209 11 21 chr11 77141534 77141725 -44702131 + B3 SINE B2 13 201 -15 3 1173 25 31 0 0 chr11 77141725 77141757 -44702099 + AT_rich Low_complexity Low_complexity 1 32 0 3 1173 968 240 38 24 chr11 77141895 77142108 -44701748 + ID_B1 SINE B4 1 216 -8 3 1173 937 204 0 38 chr11 77142261 77142444 -44701412 + B2_Mm2 SINE B2 2 177 -18 3 1173 311 281 44 0 chr11 77142469 77142585 -44701271 + L1MA4A LINE L1 5816 5938 -362 3 1173 1386 77 5 22 chr11 77142606 77142791 -44701065 + B2_Mm2 SINE B2 3 184 -11 3 1173 1243 68 0 0 chr11 77143440 77143587 -44700269 + B1_Mus1 SINE Alu 2 148 0 3 1173 188 0 74 0 chr11 77143589 77143616 -44700240 + (GAGAA)n Simple_repeat Simple_repeat 3 31 0 3 1173 922 153 17 0 chr11 77143610 77143786 -44700070 + GA-rich Low_complexity Low_complexity 2 180 0 3 1173 480 35 0 0 chr11 77143795 77143853 -44700003 + (GAGAA)n Simple_repeat Simple_repeat 3 60 0 3 1173 220 259 185 0 chr11 77143956 77144037 -44699819 + L2c LINE L2 3290 3385 -2 3 1173 228 258 30 61 chr11 77144167 77144233 -44699623 + ID4_ SINE ID 2 65 -18 3 1173 24 0 0 0 chr11 77144630 77144654 -44699202 + AT_rich Low_complexity Low_complexity 1 24 0 3 1173 1463 212 19 61 chr11 77145113 77145539 -44698317 - Lx3C LINE L1 -46 6930 6523 3 1173 524 143 0 0 chr11 77145505 77145582 -44698274 + Lx4B LINE L1 6474 6550 -508 3 1173 312 218 180 108 chr11 77146001 77146140 -44697716 + PB1 SINE Alu 1 149 0 3 1173 637 256 7 35 chr11 77146478 77146620 -44697236 - RSINE1 SINE B4 -25 140 3 3 1173 388 263 13 0 chr11 77146712 77146788 -44697068 - ID4_ SINE ID -3 80 4 3 1173 558 292 34 0 chr11 77147226 77147373 -44696483 + RSINE1 SINE B4 3 154 -11 3 1173 658 137 31 39 chr11 77147467 77147596 -44696260 - B1_Mur2 SINE Alu -1 148 21 3 1173 240 236 53 24 chr11 77148341 77148423 -44695433 + B1F SINE Alu 38 120 0 3 1173 1496 196 137 36 chr11 77148626 77148991 -44694865 - MTD LTR MaLR -17 402 1 3 1173 285 222 16 0 chr11 77149059 77149122 -44694734 + B3A SINE B2 47 110 -88 3 1173 341 255 74 124 chr11 77149233 77149354 -44694502 - PB1 SINE Alu -4 123 6 3 1173 627 151 18 71 chr11 77149698 77149856 -44694000 + B3 SINE B2 46 185 -10 3 1173 728 278 29 6 chr11 77149882 77150052 -44693804 + B3A SINE B2 7 180 -18 3 1173 731 225 42 7 chr11 77150245 77150388 -44693468 - B1F2 SINE Alu 0 149 2 3 1173 2351 143 40 55 chr11 77150796 77151196 -44692660 - ORR1B1 LTR MaLR 0 394 1 3 1173 337 245 20 41 chr11 77151588 77151686 -44692170 - PB1D10 SINE Alu 0 117 22 3 1173 516 217 109 0 chr11 77151707 77151845 -44692011 - L1ME2z LINE L1 0 6444 6292 3 1173 275 85 0 21 chr11 77151857 77151905 -44691951 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 3 1173 781 241 14 0 chr11 77151947 77152088 -44691768 - RSINE1 SINE B4 -21 144 2 3 1173 685 255 0 45 chr11 77153548 77153704 -44690152 - B1_Mur1 SINE Alu 0 149 1 3 1173 1144 223 0 44 chr11 77153717 77153942 -44689914 - B3 SINE B2 -1 215 1 3 1173 228 319 110 0 chr11 77153944 77154035 -44689821 - PB1D7 SINE Alu -19 101 1 3 1173 248 309 99 35 chr11 77154099 77154240 -44689616 + MIRc SINE MIR 29 178 -90 3 1173 589 287 33 13 chr11 77154256 77154408 -44689448 + ID_B1 SINE B4 67 221 -3 3 1173 306 290 160 0 chr11 77154582 77154682 -44689174 + PB1D10 SINE Alu 1 116 -1 3 1173 699 271 7 0 chr11 77154690 77154830 -44689026 + RSINE1 SINE B4 4 144 -21 3 1173 787 232 88 34 chr11 77154935 77155140 -44688716 + B3 SINE B2 1 216 0 3 1173 570 270 47 0 chr11 77155250 77155398 -44688458 - B3 SINE B2 -61 155 1 3 1173 1232 165 80 0 chr11 77155652 77155852 -44688004 - B3 SINE B2 0 216 1 3 1173 36 0 0 0 chr11 77155852 77155888 -44687968 + AT_rich Low_complexity Low_complexity 1 36 0 3 1173 30 83 0 0 chr11 77155992 77156064 -44687792 + AT_rich Low_complexity Low_complexity 1 72 0 3 1173 447 251 210 24 chr11 77156103 77156270 -44687586 - B3A SINE B2 0 198 1 3 1173 188 0 74 0 chr11 77156335 77156362 -44687494 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1173 1070 44 0 7 chr11 77156362 77156490 -44687366 - B1_Mus2 SINE Alu -8 139 12 3 1173 682 176 6 86 chr11 77156490 77156527 -44687329 - ID_B1 SINE B4 -8 216 65 3 1173 257 246 18 0 chr11 77156617 77156674 -44687182 + CT-rich Low_complexity Low_complexity 3 60 0 3 1173 361 223 76 19 chr11 77156678 77156783 -44687073 - B4 SINE B4 -73 219 109 3 1173 246 204 0 0 chr11 77156803 77156847 -44687009 - B4 SINE B4 -245 47 4 3 1173 640 221 56 14 chr11 77157270 77157412 -44686444 + B1_Mur2 SINE Alu 2 149 0 3 1173 220 225 250 52 chr11 77158664 77158800 -44685056 - B2_Mm2 SINE B2 -23 172 10 3 1173 567 256 70 31 chr11 77158681 77158810 -44685046 - RSINE1 SINE B4 -31 134 1 3 1173 876 210 0 0 chr11 77158814 77158957 -44684899 - B1_Mur1 SINE Alu -2 147 5 4 1173 212 179 0 0 chr11 77159297 77159336 -44684520 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1173 609 258 31 68 chr11 77159381 77159543 -44684313 - RSINE1 SINE B4 -9 156 1 4 1173 380 281 30 30 chr11 77159543 77159641 -44684215 - PB1D10 SINE Alu -18 99 1 4 1173 735 153 0 0 chr11 77159712 77159823 -44684033 - B1_Mus1 SINE Alu -37 111 1 4 1173 285 29 0 0 chr11 77160845 77160879 -44682977 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1173 297 0 0 0 chr11 77160887 77160920 -44682936 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1173 313 343 49 14 chr11 77161172 77161314 -44682542 - MER5B DNA MER1_type -27 151 5 4 1173 436 282 122 33 chr11 77163407 77163587 -44680269 + B3A SINE B2 1 196 -2 4 1173 569 171 84 4 chr11 77163618 77163741 -44680115 + L1MB3 LINE L1 5812 5939 -225 4 1173 271 285 156 37 chr11 77164033 77164168 -44679688 - MIRb SINE MIR 0 268 118 4 1173 665 147 25 117 chr11 77164469 77164631 -44679225 - B1F2 SINE Alu -1 148 2 4 1173 347 275 8 76 chr11 77165194 77165312 -44678544 + PB1D10 SINE Alu 1 110 -7 4 1173 8121 55 0 14 chr11 77165557 77166751 -44677105 + L1_Mus1 LINE L1 5388 6567 0 4 1173 681 289 0 0 chr11 77167006 77167148 -44676708 + ID_B1 SINE B4 81 222 -2 4 1173 655 232 216 52 chr11 77167242 77167492 -44676364 + B4 SINE B4 2 292 0 4 1173 957 210 45 0 chr11 77167531 77167707 -44676149 + B3A SINE B2 8 191 -7 4 1173 307 261 14 0 chr11 77167830 77167899 -44675957 - B1_Mur3 SINE Alu -78 71 2 4 1173 727 246 31 20 chr11 77167899 77168094 -44675762 - B3A SINE B2 0 198 2 4 1173 1431 74 16 0 chr11 77168417 77168606 -44675250 - B2_Mm2 SINE B2 -3 192 1 4 1173 383 149 15 0 chr11 77168609 77168676 -44675180 - PB1D10 SINE Alu 0 117 50 4 1173 438 263 197 0 chr11 77168778 77168930 -44674926 - MER5A DNA MER1_type -6 183 2 4 1173 1476 68 21 0 chr11 77169116 77169307 -44674549 + B2_Mm2 SINE B2 1 195 0 4 1173 572 322 91 74 chr11 77169395 77169680 -44674176 - B4 SINE B4 -2 290 1 4 1173 575 269 108 51 chr11 77169986 77170162 -44673694 - B3A SINE B2 0 198 13 4 1173 767 199 57 0 chr11 77170381 77170522 -44673334 - B1_Mur1 SINE Alu 0 149 1 4 1173 830 194 0 20 chr11 77170986 77171133 -44672723 - B1_Mur4 SINE Alu -2 148 5 4 1173 261 0 0 0 chr11 77171147 77171176 -44672680 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1173 22 0 0 0 chr11 77173015 77173037 -44670819 + AT_rich Low_complexity Low_complexity 1 22 0 4 1173 1270 135 91 204 chr11 77173070 77173497 -44670359 + ORR1C2 LTR MaLR 5 383 -1 4 1173 1006 148 0 0 chr11 77173549 77173691 -44670165 + B1_Mur4 SINE Alu 1 142 -8 4 1173 1011 248 24 28 chr11 77173713 77173925 -44669931 - B3 SINE B2 0 216 6 4 1173 428 208 135 0 chr11 77173943 77174039 -44669817 - PB1D9 SINE Alu -10 110 2 4 1173 845 216 57 6 chr11 77174088 77174265 -44669591 - B3 SINE B2 -30 186 1 4 1173 246 258 30 79 chr11 77174265 77174321 -44669535 + RMER12 LTR ERVK 769 819 -503 4 1173 470 267 16 32 chr11 77174288 77174412 -44669444 - B3A SINE B2 -16 182 61 4 1173 466 155 0 20 chr11 77174692 77174791 -44669065 + CT-rich Low_complexity Low_complexity 2 98 0 4 1173 243 327 28 56 chr11 77175369 77175476 -44668380 + B4A SINE B4 188 291 -1 4 1173 994 132 0 0 chr11 77175717 77175861 -44667995 + B1_Mur2 SINE Alu 6 149 0 4 1173 236 194 16 31 chr11 77175923 77175987 -44667869 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 4 1173 448 164 15 0 chr11 77176063 77176130 -44667726 - BC1_Mm scRNA scRNA -82 70 3 4 1173 322 200 200 0 chr11 77176129 77176199 -44667657 - B4A SINE B4 -59 233 150 4 1173 1005 145 161 0 chr11 77176268 77176461 -44667395 + MTC LTR MaLR 134 357 -64 4 1173 961 53 130 0 chr11 77176613 77176744 -44667112 + B1_Mus1 SINE Alu 1 148 0 4 1173 246 71 0 0 chr11 77177423 77177465 -44666391 + B3 SINE B2 175 216 0 4 1173 702 216 134 32 chr11 77177697 77177884 -44665972 - B3 SINE B2 -10 206 1 4 1173 347 262 18 53 chr11 77178061 77178174 -44665682 + PB1D10 SINE Alu 2 110 -7 4 1173 476 311 47 7 chr11 77178275 77178424 -44665432 - MER45A DNA Tip100 -2 176 22 4 1173 309 348 94 22 chr11 77178577 77178715 -44665141 - RSINE1 SINE B4 -16 149 2 4 1173 287 267 20 118 chr11 77178732 77178834 -44665022 - PB1 SINE Alu -35 92 1 4 1173 1057 62 0 20 chr11 77179104 77179252 -44664604 + B1_Mus2 SINE Alu 3 147 0 4 1173 272 305 83 10 chr11 77179901 77179997 -44663859 + PB1D7 SINE Alu 1 103 -17 4 1173 1289 142 43 19 chr11 77180423 77180632 -44663224 - B3 SINE B2 -2 214 1 4 1173 3729 138 61 10 chr11 77181030 77181651 -44662205 - Lx4A LINE L1 -2 7056 6404 4 1173 510 308 7 0 chr11 77181821 77181967 -44661889 - RSINE1 SINE B4 -17 148 2 4 1173 195 42 0 0 chr11 77181977 77182001 -44661855 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1173 452 192 64 55 chr11 77182135 77182245 -44661611 + PB1D10 SINE Alu 7 117 0 4 1173 229 321 25 13 chr11 77183932 77184011 -44659845 + L2a LINE L2 3342 3421 -5 4 1173 972 196 39 14 chr11 77184034 77184241 -44659615 - B3 SINE B2 0 216 5 4 1173 555 16 0 0 chr11 77184244 77184308 -44659548 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1173 626 156 55 9 chr11 77184395 77184505 -44659351 + B1_Mur2 SINE Alu 31 145 -4 4 1173 967 239 0 32 chr11 77185448 77185668 -44658188 + B3 SINE B2 1 213 -3 4 1173 207 195 24 0 chr11 77186002 77186043 -44657813 + CT-rich Low_complexity Low_complexity 3 44 0 4 1173 761 256 28 11 chr11 77186373 77186551 -44657305 - B3A SINE B2 -16 182 2 4 1173 1005 132 0 7 chr11 77186585 77186730 -44657126 + B1_Mus1 SINE Alu 2 145 -3 4 1173 602 152 64 37 chr11 77187251 77187360 -44656496 - B1_Mur2 SINE Alu 0 149 38 4 1173 21 0 0 0 chr11 77187918 77187939 -44655917 + AT_rich Low_complexity Low_complexity 1 21 0 4 1173 253 211 0 184 chr11 77187958 77188045 -44655811 + MT2B LTR ERVL 168 238 -363 4 1173 413 233 19 46 chr11 77187970 77188078 -44655778 + PB1D9 SINE Alu 12 116 -4 4 1173 1001 88 82 0 chr11 77188146 77188293 -44655563 + B2_Mm2 SINE B2 2 160 -35 4 1173 225 0 0 0 chr11 77188294 77188319 -44655537 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 1173 286 279 56 32 chr11 77188431 77188557 -44655299 + L1M3 LINE L1 4123 4251 -1889 4 1173 405 247 63 27 chr11 77188609 77188815 -44655041 + L1M3 LINE L1 4251 4460 -1683 4 1173 388 311 15 15 chr11 77189152 77189289 -44654567 + B1F2 SINE Alu 1 137 -12 4 1173 730 150 104 8 chr11 77189417 77189551 -44654305 + B1_Mus1 SINE Alu 1 147 -1 4 1173 240 59 0 0 chr11 77189555 77189589 -44654267 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1173 350 285 41 20 chr11 77190122 77190269 -44653587 - RSINE1 SINE B4 -13 152 3 4 1173 213 39 0 0 chr11 77191816 77191842 -44652014 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 4 1173 216 0 0 0 chr11 77191855 77191879 -44651977 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 4 1173 819 129 91 0 chr11 77191989 77192121 -44651735 - B1_Mus1 SINE Alu -3 145 2 4 1173 755 233 20 7 chr11 77192845 77192992 -44650864 - B1_Mur1 SINE Alu 0 149 1 4 1173 3530 151 54 48 chr11 77193038 77193479 -44650377 - Lx4B LINE L1 -4 7054 6608 4 1173 1235 46 115 0 chr11 77193479 77193653 -44650203 + B2_Mm2 SINE B2 2 195 0 4 1173 3530 151 54 48 chr11 77193653 77193933 -44649923 - Lx4B LINE L1 -451 6607 6329 4 1173 364 276 105 0 chr11 77194109 77194214 -44649642 - PB1D10 SINE Alu -1 116 1 4 1173 351 0 0 0 chr11 77194226 77194265 -44649591 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1173 579 199 133 78 chr11 77194307 77194487 -44649369 - B3A SINE B2 -6 192 3 4 1173 203 304 42 32 chr11 77194574 77194669 -44649187 + MIRm SINE MIR 37 132 -144 4 1173 305 302 28 19 chr11 77195054 77195162 -44648694 + PB1D10 SINE Alu 1 109 -8 4 1173 211 311 20 91 chr11 77195171 77195270 -44648586 + RSINE1 SINE B4 2 93 -72 4 1173 262 312 37 12 chr11 77195348 77195429 -44648427 + RSINE1 SINE B4 78 160 -5 4 1173 303 121 0 0 chr11 77195519 77195577 -44648279 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 4 1173 842 130 36 0 chr11 77195829 77195967 -44647889 - URR1B DNA MER1_type 0 225 83 4 1173 396 243 181 23 chr11 77195830 77196007 -44647849 + CYRA11_Mm Unknown Y-chromosome 172 376 -241 4 1173 677 130 37 0 chr11 77196007 77196115 -44647741 + URR1B DNA MER1_type 114 225 0 4 1173 286 268 85 16 chr11 77196115 77196142 -44647714 - CYRA11_Mm Unknown Y-chromosome -441 176 141 4 1173 1132 48 7 7 chr11 77196472 77196618 -44647238 + B1_Mus2 SINE Alu 2 147 0 4 1173 1186 196 10 0 chr11 77197340 77197549 -44646307 - B3 SINE B2 -4 212 2 4 1173 907 186 117 0 chr11 77198050 77198238 -44645618 + B3 SINE B2 2 211 -5 4 1173 275 242 14 57 chr11 77198759 77198829 -44645027 - RSINE1 SINE B4 -97 68 2 4 1173 448 250 10 10 chr11 77199422 77199519 -44644337 - ID_B1 SINE B4 -127 97 1 4 1173 429 146 49 0 chr11 77200417 77200499 -44643357 - B1_Mur2 SINE Alu -5 144 59 4 1173 258 360 74 13 chr11 77200560 77200709 -44643147 - L2a LINE L2 0 3426 3269 4 1173 301 295 106 75 chr11 77200835 77201117 -44642739 - L2a LINE L2 -352 3067 2777 4 1173 21 0 0 0 chr11 77201270 77201291 -44642565 + AT_rich Low_complexity Low_complexity 1 21 0 5 1173 429 221 0 0 chr11 77201291 77201395 -44642461 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 146 519 320 28 11 chr11 77201395 77201572 -44642284 - B3A SINE B2 -16 182 3 5 1174 252 86 0 0 chr11 77201584 77201619 -44642237 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1174 541 202 37 37 chr11 77201673 77201781 -44642075 - B1_Mur1 SINE Alu -41 108 1 5 1174 315 0 0 0 chr11 77201817 77201852 -44642004 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 1174 1192 95 0 12 chr11 77201852 77202011 -44641845 - B2_Mm2 SINE B2 -37 158 1 5 1174 657 225 46 8 chr11 77202310 77202440 -44641416 + ID_B1 SINE B4 84 218 -6 5 1174 896 144 0 0 chr11 77202541 77202673 -44641183 + B1_Mus1 SINE Alu 5 136 -12 5 1174 197 333 49 87 chr11 77202700 77202884 -44640972 - L2a LINE L2 -706 2713 2537 4 1174 8815 63 8 13 chr11 77202933 77203277 -44640579 - L1_Mm LINE L1 -3245 2638 2309 5 1174 1632 47 0 0 chr11 77203277 77203470 -44640386 + B2_Mm1t SINE B2 1 193 0 5 1174 8815 63 8 13 chr11 77203470 77204400 -44639456 - L1_Mm LINE L1 -3575 2308 1371 5 1174 4478 67 0 12 chr11 77204403 77204993 -44638863 + L1Md_F2 LINE L1 5987 6569 -13 5 1174 335 211 0 0 chr11 77205193 77205269 -44638587 - L1MA5 LINE L1 0 6300 6225 5 1174 261 279 471 20 chr11 77205289 77205437 -44638419 - B3 SINE B2 0 216 2 5 1174 243 194 65 0 chr11 77205455 77205517 -44638339 - L1MA5 LINE L1 -68 6232 6167 5 1174 252 0 0 0 chr11 77205647 77205675 -44638181 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1174 26 0 0 0 chr11 77205801 77205827 -44638029 + AT_rich Low_complexity Low_complexity 1 26 0 5 1174 22 35 0 0 chr11 77206246 77206275 -44637581 + AT_rich Low_complexity Low_complexity 1 29 0 5 1174 612 221 21 35 chr11 77206302 77206443 -44637413 - B1_Mur1 SINE Alu 0 149 11 5 1174 266 315 16 112 chr11 77206342 77206467 -44637389 - MT2B LTR ERVL -339 262 150 5 1174 1059 254 19 124 chr11 77206672 77206868 -44636988 - MTE2a LTR MaLR 0 379 191 5 1174 258 32 0 0 chr11 77206868 77206899 -44636957 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 5 1174 1059 254 19 124 chr11 77206899 77207121 -44636735 - MTE2a LTR MaLR -189 190 5 5 1174 27 0 0 0 chr11 77207505 77207532 -44636324 + AT_rich Low_complexity Low_complexity 1 27 0 5 1174 368 72 0 18 chr11 77207532 77207589 -44636267 + (GAAAA)n Simple_repeat Simple_repeat 2 57 0 5 1174 21 0 0 0 chr11 77208091 77208112 -44635744 + AT_rich Low_complexity Low_complexity 1 21 0 5 1174 275 320 38 0 chr11 77208655 77208753 -44635103 - B1F SINE Alu -4 116 10 5 1174 21 57 0 0 chr11 77209365 77209400 -44634456 + AT_rich Low_complexity Low_complexity 1 35 0 5 1174 2409 212 92 18 chr11 77209637 77210246 -44633610 - Lx8 LINE L1 -601 6872 6219 5 1174 674 200 67 30 chr11 77210397 77210531 -44633325 - B1_Mur1 SINE Alu -9 140 2 5 1174 942 127 24 2 chr11 77210800 77210960 -44632896 + B2_Mm2 SINE B2 2 175 -41 5 1174 441 0 0 0 chr11 77210960 77211009 -44632847 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 5 1174 748 229 87 12 chr11 77211009 77211020 -44632836 + B3 SINE B2 176 185 -31 5 1174 484 245 213 0 chr11 77211082 77211237 -44632619 + B3A SINE B2 1 188 -10 5 1174 560 255 0 26 chr11 77211248 77211401 -44632455 + B1_Mur1 SINE Alu 1 149 0 5 1174 541 312 6 43 chr11 77211407 77211568 -44632288 + RSINE1 SINE B4 11 165 0 5 1174 190 294 183 11 chr11 77212157 77212250 -44631606 + MIRc SINE MIR 30 138 -130 5 1174 715 157 0 34 chr11 77212310 77212446 -44631410 + B1_Mur2 SINE Alu 3 119 -1 5 1174 396 71 0 0 chr11 77212856 77212912 -44630944 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1174 403 174 76 65 chr11 77213117 77213209 -44630647 - B4A SINE B4 -18 274 182 5 1174 405 331 43 55 chr11 77213267 77213430 -44630426 - RSINE1 SINE B4 -1 164 4 5 1174 670 146 27 2 chr11 77213474 77213598 -44630258 + B1_Mus2 SINE Alu 1 124 -24 5 1174 233 305 95 63 chr11 77213658 77213784 -44630072 - MER5A1 DNA MER1_type 0 166 37 5 1174 351 0 0 0 chr11 77213888 77213927 -44629929 + (TTG)n Simple_repeat Simple_repeat 1 39 0 5 1174 1608 37 0 0 chr11 77215139 77215326 -44628530 + B2_Mm1t SINE B2 2 188 -5 5 1174 22 0 0 0 chr11 77215432 77215454 -44628402 + AT_rich Low_complexity Low_complexity 1 22 0 5 1174 254 246 90 30 chr11 77215794 77215861 -44627995 - ID2 SINE ID -10 73 3 5 1174 22 56 0 0 chr11 77215903 77215939 -44627917 + AT_rich Low_complexity Low_complexity 1 36 0 5 1174 1121 253 32 11 chr11 77216535 77216815 -44627041 + B4A SINE B4 5 290 -2 5 1174 720 222 116 35 chr11 77217044 77217217 -44626639 + ID_B1 SINE B4 2 188 -36 5 1174 507 294 8 31 chr11 77217216 77217346 -44626510 + RSINE1 SINE B4 39 165 0 5 1174 480 252 92 8 chr11 77217405 77217525 -44626331 + RSINE1 SINE B4 3 132 -33 5 1174 702 254 77 15 chr11 77217920 77218116 -44625740 + ID_B1 SINE B4 4 211 -13 5 1174 530 228 0 0 chr11 77218690 77218791 -44625065 + B1F2 SINE Alu 42 142 -7 5 1174 739 200 129 21 chr11 77218819 77219013 -44624843 + B3 SINE B2 2 216 0 5 1174 266 312 12 48 chr11 77219019 77219103 -44624753 + B4A SINE B4 81 161 -131 5 1174 392 263 49 29 chr11 77219028 77219130 -44624726 + PB1D10 SINE Alu 6 109 -8 5 1174 207 0 0 0 chr11 77219130 77219153 -44624703 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1174 323 319 73 40 chr11 77219154 77219304 -44624552 + RSINE1 SINE B4 11 165 0 5 1174 1315 129 24 5 chr11 77219350 77219560 -44624296 - ORR1A3 LTR MaLR 0 326 113 5 1174 1219 203 123 21 chr11 77219873 77220205 -44623651 + ORR1D2 LTR MaLR 5 370 0 5 1174 787 309 33 4 chr11 77220363 77220607 -44623249 - MER31A LTR ERV1 -230 255 5 5 1174 21 36 0 0 chr11 77220708 77220736 -44623120 + AT_rich Low_complexity Low_complexity 1 28 0 5 1174 664 206 78 78 chr11 77220953 77221094 -44622762 - Lx7 LINE L1 -190 7506 7350 5 1174 1123 52 0 0 chr11 77221094 77221229 -44622627 + B1_Mus1 SINE Alu 2 136 -12 5 1174 351 0 0 0 chr11 77221231 77221270 -44622586 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1174 664 206 78 78 chr11 77221270 77221393 -44622463 - Lx7 LINE L1 -347 7349 7239 5 1174 607 203 17 8 chr11 77221926 77222045 -44621811 - PB1D9 SINE Alu 0 120 1 5 1174 1662 183 46 79 chr11 77222060 77222451 -44621405 - ORR1C1 LTR MaLR 0 378 1 5 1174 455 308 31 0 chr11 77222568 77222698 -44621158 + B4A SINE B4 5 138 -154 5 1174 1194 61 0 0 chr11 77222699 77222846 -44621010 + B1_Mus1 SINE Alu 2 148 0 5 1174 196 53 0 50 chr11 77222852 77222892 -44620964 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1174 387 197 190 73 chr11 77222894 77223031 -44620825 + B4A SINE B4 127 279 -13 5 1174 406 231 66 41 chr11 77223870 77223992 -44619864 + RSINE1 SINE B4 8 132 -33 5 1174 23 0 0 0 chr11 77224006 77224029 -44619827 + AT_rich Low_complexity Low_complexity 1 23 0 5 1174 750 237 141 62 chr11 77224029 77224335 -44619521 - MTD LTR MaLR -49 370 41 5 1174 540 237 30 0 chr11 77224527 77224658 -44619198 + B1F2 SINE Alu 5 139 -10 5 1174 238 173 0 37 chr11 77225589 77225643 -44618213 - B1F SINE Alu -3 146 95 5 1174 1190 216 136 38 chr11 77225824 77226160 -44617696 - L1_Rod LINE L1 -2972 2875 2496 5 1174 4675 88 6 3 chr11 77226160 77226799 -44617057 - L1_Mus3 LINE L1 0 6638 5998 5 1174 1190 216 136 38 chr11 77226799 77226880 -44616976 - L1_Rod LINE L1 -3352 2495 2417 5 1174 318 26 0 0 chr11 77226935 77226974 -44616882 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 1174 1027 215 19 24 chr11 77227101 77227311 -44616545 - B3 SINE B2 -5 211 3 5 1174 25 0 0 0 chr11 77227322 77227347 -44616509 + AT_rich Low_complexity Low_complexity 1 25 0 5 1174 286 164 0 0 chr11 77227388 77227443 -44616413 + Lx5 LINE L1 6995 7049 -1 5 1174 195 278 27 27 chr11 77227505 77227579 -44616277 - MIRb SINE MIR -94 174 101 5 1174 264 321 109 18 chr11 77227667 77227832 -44616024 - MIR SINE MIR -58 204 25 5 1174 680 286 53 0 chr11 77228046 77228217 -44615639 + B3A SINE B2 1 180 -18 5 1174 588 252 7 59 chr11 77228248 77228400 -44615456 - B1_Mur1 SINE Alu -4 145 2 5 1174 382 306 18 9 chr11 77228729 77228841 -44615015 + PB1D10 SINE Alu 2 114 -3 5 1174 1048 181 119 0 chr11 77228842 77229035 -44614821 + B3 SINE B2 1 216 0 5 1174 308 224 0 0 chr11 77229286 77229344 -44614512 + B4A SINE B4 89 146 -146 5 1174 498 198 33 0 chr11 77229292 77229383 -44614473 + PB1D10 SINE Alu 10 103 -14 5 1174 1223 183 4 26 chr11 77229575 77229805 -44614051 - URR1B DNA MER1_type 0 225 1 5 1174 21 36 0 0 chr11 77230538 77230566 -44613290 + AT_rich Low_complexity Low_complexity 1 28 0 5 1174 207 146 0 0 chr11 77231185 77231226 -44612630 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1174 219 282 135 86 chr11 77231573 77231736 -44612120 - MIR SINE MIR -2 260 90 5 1174 697 305 36 105 chr11 77231850 77232154 -44611702 + B4A SINE B4 10 292 0 5 1174 189 0 0 0 chr11 77233019 77233040 -44610816 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1174 354 270 107 33 chr11 77233047 77233198 -44610658 + B4A SINE B4 132 292 0 5 1174 230 240 20 0 chr11 77233202 77233252 -44610604 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1174 789 111 17 0 chr11 77233299 77233416 -44610440 + PB1D9 SINE Alu 2 120 0 5 1174 694 251 69 11 chr11 77233648 77233837 -44610019 + B3 SINE B2 17 216 0 5 1174 259 343 9 18 chr11 77233936 77234046 -44609810 - L2a LINE L2 -15 3411 3303 5 1174 549 42 0 0 chr11 77235327 77235398 -44608458 - L1Md_F2 LINE L1 -12 6570 6500 5 1174 704 175 32 0 chr11 77235400 77235526 -44608330 + B1_Mur1 SINE Alu 14 143 -6 6 1174 244 273 114 0 chr11 77235797 77235885 -44607971 + ID_B1 SINE B4 75 172 -52 6 1174 330 221 99 59 chr11 77235808 77235909 -44607947 + PB1D10 SINE Alu 5 109 -8 6 1174 2458 149 45 2 chr11 77236163 77236567 -44607289 + MTC LTR MaLR 1 421 0 6 1174 493 160 218 40 chr11 77237470 77237594 -44606262 - B1_Mur2 SINE Alu -2 147 2 6 1174 567 216 18 9 chr11 77237787 77237899 -44605957 + PB1D10 SINE Alu 5 117 0 6 1174 1553 43 0 11 chr11 77238281 77238469 -44605387 + B2_Mm1a SINE B2 2 187 -6 6 1174 211 234 0 25 chr11 77238535 77238614 -44605242 + T-rich Low_complexity Low_complexity 3 79 0 6 1174 1030 206 29 5 chr11 77239255 77239465 -44604391 + B3 SINE B2 2 216 0 6 1174 561 328 36 44 chr11 77239489 77239741 -44604115 + MER63D DNA AcHobo 136 385 -676 6 1174 1173 48 0 20 chr11 77239884 77240033 -44603823 + B1_Mus2 SINE Alu 2 147 0 6 1174 365 275 0 0 chr11 77240123 77240203 -44603653 - ID2 SINE ID -1 82 3 6 1174 1173 87 20 66 chr11 77240209 77240406 -44603450 - B2_Mm1t SINE B2 -5 188 1 6 1174 232 332 30 0 chr11 77240997 77241091 -44602765 - B1F2 SINE Alu -46 103 1 6 1174 877 201 140 21 chr11 77241110 77241303 -44602553 - B3 SINE B2 0 216 1 6 1174 811 131 15 0 chr11 77241467 77241597 -44602259 - B1_Mur3 SINE Alu 0 149 18 6 1174 610 261 18 53 chr11 77242507 77242677 -44601179 + RSINE1 SINE B4 2 165 0 6 1174 31 26 0 0 chr11 77242696 77242734 -44601122 + AT_rich Low_complexity Low_complexity 1 38 0 6 1174 473 344 26 0 chr11 77242734 77242885 -44600971 + ID_B1 SINE B4 3 157 -67 6 1174 652 220 23 76 chr11 77242887 77243059 -44600797 + RSINE1 SINE B4 2 164 -1 6 1174 258 302 31 81 chr11 77244420 77244546 -44599310 - L1MA4A LINE L1 -7 6296 6183 6 1174 694 178 355 0 chr11 77244546 77244698 -44599158 - B3 SINE B2 -10 206 1 6 1174 400 210 40 10 chr11 77244698 77244799 -44599057 - L1MA6 LINE L1 -121 6179 6076 6 1174 1108 55 0 40 chr11 77244869 77245021 -44598835 + B1_Mus1 SINE Alu 1 146 -2 6 1174 1371 77 5 16 chr11 77245192 77245376 -44598480 + B2_Mm1a SINE B2 3 184 -9 6 1174 600 228 44 0 chr11 77245708 77245844 -44598012 + B1_Mm SINE Alu 1 142 -5 6 1174 360 206 67 0 chr11 77246161 77246243 -44597613 - L1M3 LINE L1 -562 5618 5530 6 1174 32 0 0 0 chr11 77246246 77246278 -44597578 + AT_rich Low_complexity Low_complexity 1 32 0 6 1174 213 196 0 0 chr11 77246389 77246435 -44597421 + CT-rich Low_complexity Low_complexity 3 48 0 6 1174 30494 50 4 3 chr11 77246631 77250421 -44593435 + L1_Mm LINE L1 1934 5727 -156 6 1174 2009 58 4 11 chr11 77250421 77250684 -44593172 + L1Md_F2 LINE L1 6322 6582 0 6 1174 405 39 0 0 chr11 77251418 77251469 -44592387 + (CAGAA)n Simple_repeat Simple_repeat 3 53 0 6 1174 431 143 118 39 chr11 77251480 77251582 -44592274 + B1_Mus1 SINE Alu 2 111 -9 6 1174 356 59 0 19 chr11 77251596 77251648 -44592208 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 6 1174 505 228 18 176 chr11 77251760 77251925 -44591931 - B1_Mur1 SINE Alu -10 139 1 6 1174 1398 176 4 16 chr11 77252296 77252550 -44591306 - MERVL_2A-int LTR ERVL -5496 265 15 6 1174 189 0 0 0 chr11 77252552 77252573 -44591283 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1174 1000 102 25 6 chr11 77252573 77252731 -44591125 - B2_Mm2 SINE B2 -34 161 1 6 1174 602 190 52 124 chr11 77252779 77253104 -44590752 - MT2B LTR ERVL -74 527 5 6 1174 754 131 23 0 chr11 77253366 77253496 -44590360 + B1_Mur3 SINE Alu 17 149 0 6 1174 402 224 102 17 chr11 77253742 77253860 -44589996 + RSINE1 SINE B4 34 161 -4 6 1174 260 224 50 50 chr11 77254421 77254501 -44589355 + ID4_ SINE ID 1 80 -3 6 1174 208 362 74 11 chr11 77254870 77254965 -44588891 + MIRm SINE MIR 174 274 -2 6 1174 699 157 7 35 chr11 77255004 77255149 -44588707 + B1_Mus1 SINE Alu 7 147 -1 6 1174 216 0 0 0 chr11 77255250 77255274 -44588582 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1174 226 319 60 17 chr11 77256511 77256643 -44587213 + MIR SINE MIR 20 161 -107 6 1174 306 287 0 65 chr11 77256645 77256753 -44587103 + MT2B LTR ERVL 157 257 -344 6 1174 528 202 64 0 chr11 77256676 77256785 -44587071 + B1_Mur2 SINE Alu 21 136 -13 6 1174 348 253 126 0 chr11 77256858 77256953 -44586903 - ID_B1 SINE B4 -4 220 114 6 1174 603 212 60 15 chr11 77258978 77259112 -44584744 + B1_Mur2 SINE Alu 2 141 -8 6 1174 326 37 19 0 chr11 77259330 77259384 -44584472 - L1Md_F2 LINE L1 0 6582 6528 6 1174 967 212 55 10 chr11 77259575 77259775 -44584081 - B3 SINE B2 -6 210 2 6 1174 207 0 0 0 chr11 77259804 77259827 -44584029 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1174 847 169 29 0 chr11 77260924 77261060 -44582796 + B1_Mur1 SINE Alu 1 140 -9 6 1174 26 50 0 0 chr11 77261365 77261405 -44582451 + AT_rich Low_complexity Low_complexity 1 40 0 6 1174 1166 265 51 13 chr11 77261575 77261888 -44581968 - Lx7 LINE L1 -423 7273 6949 6 1174 589 176 86 22 chr11 77261892 77262031 -44581825 - B3 SINE B2 0 216 69 6 1174 657 194 86 0 chr11 77262018 77262157 -44581699 - B3 SINE B2 -13 203 53 6 1174 405 0 0 0 chr11 77262161 77262206 -44581650 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1174 518 268 8 8 chr11 77262304 77262432 -44581424 + RSINE1 SINE B4 1 128 -37 6 1174 437 204 24 103 chr11 77262583 77262709 -44581147 + B1_Mur1 SINE Alu 28 143 -6 6 1174 386 206 98 0 chr11 77263930 77264032 -44579824 - B3A SINE B2 -85 113 2 6 1174 1216 191 5 14 chr11 77264151 77264369 -44579487 - B3 SINE B2 0 216 1 6 1174 303 28 0 0 chr11 77264717 77264753 -44579103 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 1174 768 172 7 7 chr11 77264753 77264888 -44578968 - B1_Mus2 SINE Alu -10 137 3 6 1174 316 269 0 25 chr11 77265070 77265150 -44578706 - ID4_ SINE ID -3 80 3 6 1174 416 227 70 43 chr11 77265768 77265883 -44577973 + PB1D9 SINE Alu 2 119 -1 6 1174 526 95 295 0 chr11 77265883 77265978 -44577878 + B1_Mus2 SINE Alu 9 131 -16 6 1174 471 35 0 0 chr11 77265998 77266055 -44577801 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 6 1174 760 242 43 34 chr11 77266055 77266264 -44577592 + B3 SINE B2 3 213 -3 6 1174 222 150 0 0 chr11 77266267 77266307 -44577549 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 6 1174 357 125 0 0 chr11 77269128 77269184 -44574672 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1174 29 0 0 0 chr11 77269251 77269280 -44574576 + AT_rich Low_complexity Low_complexity 1 29 0 6 1174 225 0 0 0 chr11 77270904 77270929 -44572927 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1174 745 165 0 0 chr11 77271250 77271365 -44572491 + PB1D7 SINE Alu 1 115 -5 6 1174 215 239 0 0 chr11 77273836 77273882 -44569974 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 6 1174 517 152 94 3 chr11 77274176 77274284 -44569572 + B3 SINE B2 3 117 -76 6 1174 615 244 51 13 chr11 77274761 77274919 -44568937 - B3 SINE B2 0 216 53 6 1174 405 0 0 0 chr11 77275129 77275174 -44568682 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1174 441 0 0 0 chr11 77275174 77275222 -44568634 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1174 23 0 0 0 chr11 77276326 77276349 -44567507 + GC_rich Low_complexity Low_complexity 1 23 0 6 1174 573 148 0 0 chr11 77277924 77278052 -44565804 + (GA)n Simple_repeat Simple_repeat 2 129 0 6 1174 242 319 132 0 chr11 77278700 77278791 -44565065 + PB1D10 SINE Alu 5 107 -10 6 1174 320 271 0 0 chr11 77279025 77279095 -44564761 + ID2 SINE ID 2 71 -12 6 1174 189 0 0 0 chr11 77279105 77279126 -44564730 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1174 189 0 0 0 chr11 77281142 77281163 -44562693 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 6 1174 486 0 0 0 chr11 77283607 77283661 -44560195 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1174 263 215 12 25 chr11 77285240 77285321 -44558535 + (CTGGGG)n Simple_repeat Simple_repeat 6 85 0 6 1174 470 230 54 23 chr11 77287324 77287453 -44556403 + B1_Mur2 SINE Alu 1 133 -16 6 1174 234 0 0 0 chr11 77287462 77287488 -44556368 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 6 1174 3562 20 2 0 chr11 77288174 77288569 -44555287 + MTA_Mm LTR MaLR 1 396 0 6 1174 232 322 49 80 chr11 77288658 77288679 -44555177 - L2a LINE L2 0 3375 3357 6 1174 397 247 0 0 chr11 77288679 77288760 -44555096 - ID4 SINE ID -1 82 2 6 1174 247 323 49 75 chr11 77288760 77288912 -44554944 - L2a LINE L2 -40 3386 3219 6 1174 1492 51 17 0 chr11 77288912 77289089 -44554767 + B2_Mm2 SINE B2 2 181 -14 6 1174 242 199 166 2 chr11 77289445 77289518 -44554338 + MIRb SINE MIR 119 203 -59 6 1174 262 322 195 4 chr11 77290475 77290772 -44553084 - L2a LINE L2 0 3426 3030 6 1174 378 216 28 93 chr11 77291748 77291855 -44552001 + PB1D10 SINE Alu 11 110 -10 6 1174 1053 112 88 12 chr11 77292007 77292178 -44551678 + B2_Mm1t SINE B2 1 184 -9 6 1174 242 267 17 0 chr11 77292577 77292637 -44551219 + GA-rich Low_complexity Low_complexity 2 62 0 6 1174 1264 40 0 0 chr11 77292902 77293054 -44550802 + L1_Mus1 LINE L1 6415 6566 -1 6 1174 1061 120 44 0 chr11 77293161 77293344 -44550512 + URR1A DNA MER1_type 35 225 -1 7 1174 982 157 7 0 chr11 77294219 77294366 -44549490 - B1_Mur2 SINE Alu 0 149 2 7 1174 478 315 125 5 chr11 77294587 77294885 -44548971 + L1MEc LINE L1 1631 1947 -4468 7 1174 612 298 7 0 chr11 77295667 77295818 -44548038 + RSINE1 SINE B4 7 158 -7 7 1174 369 0 0 0 chr11 77295821 77295862 -44547994 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1174 254 335 53 32 chr11 77295891 77296079 -44547777 + L2b LINE L2 2574 2765 -654 7 1174 985 264 0 0 chr11 77296113 77296321 -44547535 + B3 SINE B2 8 215 -1 7 1174 320 243 0 58 chr11 77296953 77297049 -44546807 - ID4 SINE ID -60 92 2 7 1174 297 379 40 40 chr11 77297101 77297376 -44546480 + L2b LINE L2 3098 3372 -3 7 1174 241 307 69 0 chr11 77297603 77297704 -44546152 + B3 SINE B2 106 213 -3 7 1174 341 239 65 0 chr11 77297847 77297939 -44545917 + B3A SINE B2 68 165 -33 7 1174 550 130 4 0 chr11 77298145 77298242 -44545614 - B1_Mur3 SINE Alu 0 149 50 7 1174 726 214 12 156 chr11 77298267 77298511 -44545345 - B3 SINE B2 -4 212 4 7 1174 993 156 190 22 chr11 77299881 77300065 -44543791 - B3 SINE B2 -1 215 1 7 1174 613 239 36 14 chr11 77302025 77302165 -44541691 - B1F1 SINE Alu -6 143 1 7 1174 24 67 0 0 chr11 77302872 77302917 -44540939 + GC_rich Low_complexity Low_complexity 1 45 0 7 1174 49 52 0 0 chr11 77303068 77303145 -44540711 + GC_rich Low_complexity Low_complexity 1 77 0 7 1174 197 33 0 32 chr11 77303184 77303215 -44540641 + (CGG)n Simple_repeat Simple_repeat 3 32 0 7 1174 23 33 0 0 chr11 77303394 77303424 -44540432 + GC_rich Low_complexity Low_complexity 1 30 0 7 1174 189 0 0 0 chr11 77303425 77303446 -44540410 + (CCG)n Simple_repeat Simple_repeat 3 23 0 7 1174 196 326 65 11 chr11 77304338 77304431 -44539425 + MIR SINE MIR 75 172 -90 7 1174 21 57 0 0 chr11 77306737 77306772 -44537084 + GC_rich Low_complexity Low_complexity 1 35 0 7 1174 261 75 0 0 chr11 77306844 77306884 -44536972 + (CGGGG)n Simple_repeat Simple_repeat 3 42 0 7 1174 55 94 0 0 chr11 77306885 77307045 -44536811 + GC_rich Low_complexity Low_complexity 1 160 0 7 1174 34 89 0 0 chr11 77307155 77307245 -44536611 + GC_rich Low_complexity Low_complexity 1 90 0 7 1174 419 171 102 28 chr11 77309060 77309159 -44534697 + PB1D9 SINE Alu 3 104 -16 7 1174 246 215 66 123 chr11 77309071 77309177 -44534679 + MT2B LTR ERVL 174 273 -328 7 1174 781 178 44 7 chr11 77309629 77309765 -44534091 - B1_Mur4 SINE Alu -9 141 1 7 1174 565 170 132 0 chr11 77309825 77309931 -44533925 - PB1D9 SINE Alu 0 120 1 7 1174 1639 21 16 16 chr11 77310219 77310412 -44533444 - B2_Mm1t SINE B2 0 193 1 7 1174 400 287 45 30 chr11 77311874 77312007 -44531849 + MIRb SINE MIR 30 164 -104 7 1174 273 57 0 0 chr11 77312691 77312726 -44531130 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1174 266 292 9 86 chr11 77313497 77313613 -44530243 + MIR SINE MIR 59 165 -97 7 1174 1443 70 11 0 chr11 77315408 77315595 -44528261 - B2_Mm1t SINE B2 -3 190 2 7 1174 286 341 112 16 chr11 77315803 77315928 -44527928 + MIRb SINE MIR 84 220 -48 7 1174 550 195 127 0 chr11 77322896 77323014 -44520842 - B1_Mm SINE Alu -12 135 3 7 1174 483 193 119 0 chr11 77323540 77323649 -44520207 - B3 SINE B2 -93 123 2 7 1174 347 325 76 8 chr11 77323921 77324039 -44519817 + ID_B1 SINE B4 80 205 -19 7 1174 411 38 0 0 chr11 77324109 77324162 -44519694 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1174 409 236 80 18 chr11 77324300 77324412 -44519444 - PB1 SINE Alu -6 121 3 7 1174 1508 63 5 16 chr11 77324550 77324728 -44519128 + B2_Mm1t SINE B2 2 180 -13 7 1174 297 0 0 0 chr11 77324728 77324761 -44519095 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1174 1508 63 5 16 chr11 77324761 77324774 -44519082 + B2_Mm1t SINE B2 181 191 -2 7 1174 260 265 72 14 chr11 77325019 77325088 -44518768 + ID_B1 SINE B4 92 164 -60 7 1174 727 69 329 7 chr11 77325090 77325236 -44518620 + B2_Mm2 SINE B2 1 193 -2 7 1174 21 0 0 0 chr11 77325245 77325266 -44518590 + AT_rich Low_complexity Low_complexity 1 21 0 7 1174 328 275 0 0 chr11 77325266 77325335 -44518521 + ID_B1 SINE B4 151 219 -5 7 1174 488 206 101 0 chr11 77325341 77325466 -44518390 + B3 SINE B2 2 140 -53 7 1174 710 191 0 78 chr11 77325475 77325628 -44518228 + B1_Mur4 SINE Alu 9 149 -1 7 1174 22 35 0 0 chr11 77325700 77325729 -44518127 + AT_rich Low_complexity Low_complexity 1 29 0 7 1174 22 56 0 0 chr11 77326784 77326820 -44517036 + GC_rich Low_complexity Low_complexity 1 36 0 7 1174 274 128 0 49 chr11 77326871 77326953 -44516903 + (CCCCG)n Simple_repeat Simple_repeat 5 82 0 7 1174 684 184 142 0 chr11 77327519 77327660 -44516196 + RSINE1 SINE B4 4 164 -1 7 1174 360 281 128 32 chr11 77330000 77330125 -44513731 - ID_B1 SINE B4 0 224 88 7 1174 198 0 0 0 chr11 77330130 77330152 -44513704 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 7 1174 203 138 0 0 chr11 77330457 77330486 -44513370 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 7 1174 652 230 74 7 chr11 77331335 77331484 -44512372 + B3 SINE B2 5 163 -53 7 1174 270 0 0 0 chr11 77331524 77331554 -44512302 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1174 207 0 0 0 chr11 77331567 77331590 -44512266 + (TGG)n Simple_repeat Simple_repeat 2 24 0 7 1174 297 283 54 11 chr11 77331594 77331687 -44512169 - PB1D9 SINE Alu -3 117 21 7 1175 214 204 34 85 chr11 77333576 77333635 -44510221 - ID4_ SINE ID -26 57 2 7 1175 405 235 174 0 chr11 77333806 77333921 -44509935 - B1_Mur1 SINE Alu -2 147 13 7 1175 278 240 69 50 chr11 77333837 77333938 -44509918 - MT2B LTR ERVL -336 265 163 7 1175 1134 74 0 0 chr11 77333980 77334128 -44509728 + B1_Mus1 SINE Alu 1 148 0 7 1175 181 57 57 0 chr11 77334128 77334163 -44509693 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 7 1175 315 122 0 0 chr11 77334637 77334686 -44509170 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1175 308 284 12 0 chr11 77334744 77334825 -44509031 - ID4_ SINE ID 0 83 2 7 1175 578 267 52 0 chr11 77334962 77335097 -44508759 - B1_Mur2 SINE Alu -6 143 2 7 1175 663 260 44 127 chr11 77335164 77335296 -44508560 + ID_B1 SINE B4 15 156 -68 7 1175 2598 32 0 3 chr11 77335296 77335605 -44508251 + L1_Mus1 LINE L1 6260 6567 0 7 1175 663 260 44 127 chr11 77335605 77335701 -44508155 + ID_B1 SINE B4 157 224 0 7 1175 180 0 0 0 chr11 77335707 77335727 -44508129 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1175 606 232 84 35 chr11 77336115 77336300 -44507556 + ID_B1 SINE B4 83 271 -21 7 1175 608 320 47 80 chr11 77336391 77336597 -44507259 + B4A SINE B4 4 207 -85 7 1175 863 156 196 22 chr11 77336597 77336781 -44507075 + B3 SINE B2 1 216 0 7 1175 608 320 47 80 chr11 77336781 77336873 -44506983 + B4A SINE B4 208 291 -1 7 1175 466 362 0 0 chr11 77336877 77337037 -44506819 + (CA)n Simple_repeat Simple_repeat 1 160 0 7 1175 276 250 0 58 chr11 77337050 77337241 -44506615 + (CATA)n Simple_repeat Simple_repeat 1 180 0 7 1175 458 300 11 40 chr11 77337244 77337421 -44506435 + (CATATA)n Simple_repeat Simple_repeat 1 172 0 7 1175 429 331 0 19 chr11 77337336 77337490 -44506366 + (CATA)n Simple_repeat Simple_repeat 3 153 0 7 1175 1164 87 69 0 chr11 77338104 77338277 -44505579 + B2_Mm2 SINE B2 3 187 -8 7 1175 289 304 61 0 chr11 77338308 77338423 -44505433 - B3A SINE B2 -74 124 3 7 1175 575 217 46 8 chr11 77338438 77338568 -44505288 - ID_B1 SINE B4 -2 222 88 7 1175 469 210 109 10 chr11 77338701 77338802 -44505054 - PB1D9 SINE Alu -8 112 2 7 1175 291 222 185 22 chr11 77339141 77339233 -44504623 + PB1D10 SINE Alu 1 107 -10 7 1175 943 136 79 0 chr11 77339424 77339601 -44504255 + B2_Mm2 SINE B2 2 192 -3 7 1175 505 270 102 70 chr11 77339760 77339975 -44503881 - B4A SINE B4 -3 289 68 7 1175 810 180 7 21 chr11 77340019 77340161 -44503695 - B1_Mus2 SINE Alu -6 141 2 7 1175 244 65 0 61 chr11 77340229 77340278 -44503578 + (TATG)n Simple_repeat Simple_repeat 1 46 0 7 1175 307 242 242 0 chr11 77340330 77340421 -44503435 - ID_B1 SINE B4 0 224 112 7 1175 252 260 70 88 chr11 77340421 77340444 -44503412 - PB1D7 SINE Alu 0 120 9 7 1175 470 216 134 0 chr11 77340592 77340689 -44503167 + B3 SINE B2 14 123 -93 7 1175 201 146 0 0 chr11 77340692 77340740 -44503116 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 7 1175 311 210 169 0 chr11 77341372 77341471 -44502385 + B1_Mus2 SINE Alu 2 118 -2 7 1175 494 239 111 0 chr11 77341481 77341598 -44502258 + RSINE1 SINE B4 3 132 -33 7 1175 180 0 0 0 chr11 77341836 77341856 -44502000 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1175 794 164 0 0 chr11 77341865 77341981 -44501875 - B1_Mus1 SINE Alu -28 120 5 7 1175 1176 116 40 6 chr11 77341998 77342172 -44501684 + B2_Mm2 SINE B2 1 180 -15 7 1175 413 51 347 0 chr11 77342196 77342304 -44501552 + B2_Mm2 SINE B2 47 195 0 7 1175 508 204 0 0 chr11 77342354 77342447 -44501409 + PB1D9 SINE Alu 2 94 -26 7 1175 919 224 11 32 chr11 77342450 77342639 -44501217 + B3 SINE B2 27 211 -5 7 1175 27 49 0 0 chr11 77343540 77343581 -44500275 + AT_rich Low_complexity Low_complexity 1 41 0 7 1175 182 98 0 47 chr11 77343779 77343822 -44500034 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1175 21 0 0 0 chr11 77343869 77343890 -44499966 + AT_rich Low_complexity Low_complexity 1 21 0 7 1175 23 0 0 0 chr11 77344359 77344382 -44499474 + AT_rich Low_complexity Low_complexity 1 23 0 7 1175 180 77 0 0 chr11 77346107 77346133 -44497723 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1175 490 233 115 8 chr11 77346976 77347106 -44496750 + B1F SINE Alu 6 149 0 8 1175 374 308 87 20 chr11 77347106 77347124 -44496732 + B4A SINE B4 91 248 -44 8 1175 224 226 0 19 chr11 77347780 77347834 -44496022 + (CATA)n Simple_repeat Simple_repeat 2 54 0 8 1175 195 184 0 0 chr11 77349282 77349320 -44494536 + A-rich Low_complexity Low_complexity 1 38 0 8 1175 370 211 189 0 chr11 77349475 77349565 -44494291 - PB1D10 SINE Alu -6 111 5 8 1175 251 264 98 60 chr11 77349492 77349625 -44494231 - MT2B2 LTR ERVL -346 238 101 8 1175 315 122 0 0 chr11 77351924 77351973 -44491883 + (CACCAT)n Simple_repeat Simple_repeat 1 49 0 8 1175 768 192 14 0 chr11 77351973 77352119 -44491737 - B1_Mur4 SINE Alu -2 148 1 8 1175 198 0 0 0 chr11 77352170 77352192 -44491664 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 8 1175 274 353 71 29 chr11 77352260 77352271 -44491585 - B1_Mus1 SINE Alu 0 148 111 8 1175 467 245 49 0 chr11 77352271 77352373 -44491483 - ID_B1 SINE B4 -11 213 107 8 1175 274 353 71 29 chr11 77352373 77352400 -44491456 - B1_Mus1 SINE Alu 0 110 3 8 1175 841 189 0 7 chr11 77352803 77352942 -44490914 + B1_Mur2 SINE Alu 5 142 -7 8 1175 26 0 0 0 chr11 77352942 77352968 -44490888 + AT_rich Low_complexity Low_complexity 1 26 0 8 1175 268 241 67 0 chr11 77353069 77353136 -44490720 + ID2 SINE ID 24 93 -59 8 1175 1332 101 37 0 chr11 77353145 77353333 -44490523 + B2_Mm2 SINE B2 1 195 0 8 1175 423 0 0 0 chr11 77353365 77353412 -44490444 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1175 195 42 0 0 chr11 77353958 77353982 -44489874 + (TTTTC)n Simple_repeat Simple_repeat 5 28 0 8 1175 683 124 9 0 chr11 77353982 77354095 -44489761 + (TCC)n Simple_repeat Simple_repeat 2 115 0 8 1175 1111 49 7 20 chr11 77354099 77354246 -44489610 - B1_Mus1 SINE Alu -2 146 2 8 1175 370 245 60 12 chr11 77354365 77354520 -44489336 + MER58D DNA MER1_type 293 377 -9 8 1175 762 128 17 0 chr11 77354622 77354739 -44489117 - PB1D9 SINE Alu 0 120 2 8 1175 471 165 192 32 chr11 77354745 77354870 -44488986 - B1_Mur4 SINE Alu -5 145 1 8 1175 369 0 0 0 chr11 77356983 77357024 -44486832 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1175 543 104 6 0 chr11 77357345 77357429 -44486427 - B1_Mus2 SINE Alu -227 87 1 8 1175 318 258 93 41 chr11 77357440 77357537 -44486319 - PB1D10 SINE Alu -5 112 11 8 1175 385 214 143 0 chr11 77357737 77357835 -44486021 + B1_Mus2 SINE Alu 1 112 -35 8 1175 183 80 0 0 chr11 77357850 77357875 -44485981 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1175 1118 82 7 0 chr11 77357933 77358079 -44485777 + B1_Mus2 SINE Alu 1 147 0 8 1175 22 35 0 0 chr11 77358152 77358181 -44485675 + AT_rich Low_complexity Low_complexity 1 29 0 8 1175 240 207 85 17 chr11 77358233 77358292 -44485564 + BC1_Mm scRNA scRNA 4 66 -86 8 1175 678 172 105 17 chr11 77358438 77358610 -44485246 + B2_Mm2 SINE B2 2 188 -7 8 1175 1537 52 5 0 chr11 77359349 77359541 -44484315 + B2_Mm1t SINE B2 1 193 0 8 1175 289 265 120 8 chr11 77359556 77359689 -44484167 + B1F2 SINE Alu 2 149 0 8 1175 26 50 0 0 chr11 77359689 77359729 -44484127 + AT_rich Low_complexity Low_complexity 1 40 0 8 1175 747 142 30 30 chr11 77359735 77359866 -44483990 + B1_Mus2 SINE Alu 17 147 0 8 1175 728 267 58 0 chr11 77359898 77360070 -44483786 + B3 SINE B2 1 182 -34 8 1175 414 0 0 0 chr11 77360079 77360125 -44483731 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1175 342 0 0 0 chr11 77360125 77360162 -44483694 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1175 259 240 0 0 chr11 77360274 77360324 -44483532 - B4 SINE B4 -156 136 87 8 1175 448 157 60 12 chr11 77360564 77360648 -44483208 - PB1D9 SINE Alu 0 120 33 8 1175 394 261 37 178 chr11 77360688 77360883 -44482973 - B3A SINE B2 0 216 38 8 1175 1436 75 21 0 chr11 77360883 77361070 -44482786 - B2_Mm2 SINE B2 -4 191 1 8 1175 394 257 34 178 chr11 77361070 77361118 -44482738 - B3A SINE B2 -161 37 5 8 1175 291 279 0 0 chr11 77361201 77361262 -44482594 + B1F2 SINE Alu 3 63 -86 8 1175 429 286 167 8 chr11 77361290 77361410 -44482446 + RSINE1 SINE B4 4 142 -23 8 1175 485 140 94 57 chr11 77361494 77361600 -44482256 + B1_Mus1 SINE Alu 38 147 -1 8 1175 204 302 107 25 chr11 77361712 77361834 -44482022 - L2b LINE L2 -6 3369 3238 8 1175 803 180 237 6 chr11 77361933 77362106 -44481750 - B3 SINE B2 -3 213 1 8 1175 1179 61 0 13 chr11 77362277 77362426 -44481430 - B1_Mus2 SINE Alu 0 147 1 8 1175 679 228 0 14 chr11 77362429 77362576 -44481280 - B1_Mus2 SINE Alu -1 146 2 8 1175 276 195 80 139 chr11 77363162 77363287 -44480569 + B1_Mm SINE Alu 19 140 -7 8 1175 180 0 0 0 chr11 77363287 77363307 -44480549 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1175 1004 118 88 22 chr11 77363310 77363492 -44480364 + B2_Mm2 SINE B2 2 195 0 8 1175 24 0 0 0 chr11 77363551 77363575 -44480281 + AT_rich Low_complexity Low_complexity 1 24 0 8 1175 843 175 14 7 chr11 77363643 77363787 -44480069 - B1_Mur4 SINE Alu -5 145 1 8 1175 581 218 96 27 chr11 77364844 77364990 -44478866 - B3A SINE B2 -16 182 27 8 1175 857 92 123 0 chr11 77365023 77365153 -44478703 - B1_Mus1 SINE Alu 0 148 3 8 1175 213 94 0 0 chr11 77365210 77365242 -44478614 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 8 1175 229 118 0 0 chr11 77365242 77365276 -44478580 - B2_Mm1a SINE B2 -38 155 122 8 1175 279 0 0 0 chr11 77365285 77365316 -44478540 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 8 1175 257 108 0 0 chr11 77365318 77365355 -44478501 - B2_Mm1a SINE B2 -35 158 122 8 1175 387 0 0 0 chr11 77365364 77365407 -44478449 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 8 1175 1202 70 6 0 chr11 77365408 77365566 -44478290 - B2_Mm1t SINE B2 -34 159 1 8 1175 291 262 176 9 chr11 77365703 77365811 -44478045 - B4A SINE B4 -3 289 164 8 1175 223 376 29 81 chr11 77365950 77366086 -44477770 - B1F1 SINE Alu -20 129 1 8 1175 1337 71 49 0 chr11 77366136 77366320 -44477536 - B2_Mm2 SINE B2 -2 193 1 8 1175 835 159 50 7 chr11 77366329 77366468 -44477388 - B1_Mur4 SINE Alu -5 145 1 8 1175 335 298 0 12 chr11 77366759 77366844 -44477012 - B3 SINE B2 -33 183 100 8 1175 506 206 9 29 chr11 77366841 77366946 -44476910 + B1_Mur4 SINE Alu 39 141 -9 8 1175 28 0 0 0 chr11 77367135 77367163 -44476693 + AT_rich Low_complexity Low_complexity 1 28 0 8 1175 232 351 4 92 chr11 77367463 77367479 -44476377 + B4A SINE B4 65 111 -113 8 1175 239 368 23 130 chr11 77367479 77367610 -44476246 + B1F1 SINE Alu 1 117 -32 8 1175 232 351 4 92 chr11 77367610 77367645 -44476211 + B4A SINE B4 112 224 0 8 1175 652 180 82 0 chr11 77367786 77367908 -44475948 + B1_Mus2 SINE Alu 10 141 -6 8 1175 1124 30 0 0 chr11 77368080 77368212 -44475644 - B1_Mus1 SINE Alu -16 132 1 8 1175 1092 124 54 5 chr11 77368245 77368431 -44475425 - B2_Mm2 SINE B2 0 195 1 8 1175 720 229 0 0 chr11 77368498 77368629 -44475227 - B1_Mus2 SINE Alu -15 132 2 8 1175 356 263 50 10 chr11 77368750 77368850 -44475006 + PB1D9 SINE Alu 17 120 0 8 1175 868 267 34 105 chr11 77369578 77369787 -44474069 + B3A SINE B2 2 195 0 8 1175 211 296 70 0 chr11 77370084 77370155 -44473701 + PB1D7 SINE Alu 45 120 0 8 1175 605 244 36 3 chr11 77370246 77370388 -44473468 + B1_Mur1 SINE Alu 3 147 0 8 1175 22 0 0 0 chr11 77370601 77370623 -44473233 + AT_rich Low_complexity Low_complexity 1 22 0 8 1175 1041 225 21 0 chr11 77370623 77370810 -44473046 - B3 SINE B2 -12 204 14 8 1175 376 267 53 30 chr11 77370877 77370985 -44472871 - PB1D10 SINE Alu 0 117 10 8 1175 295 277 17 26 chr11 77370987 77371030 -44472826 - L1M4 LINE L1 -346 5828 5788 8 1175 1672 150 98 40 chr11 77371030 77371352 -44472504 + ORR1B2 LTR MaLR 1 351 -16 8 1175 1182 48 0 20 chr11 77371352 77371502 -44472354 - B1_Mus1 SINE Alu 0 148 2 8 1175 1672 150 98 40 chr11 77371502 77371526 -44472330 + ORR1B2 LTR MaLR 352 367 0 8 1175 295 277 17 26 chr11 77371526 77371597 -44472259 - L1M4 LINE L1 -387 5787 5715 8 1175 611 336 68 16 chr11 77371841 77372089 -44471767 + B4A SINE B4 2 262 -30 8 1175 24 0 0 0 chr11 77372186 77372210 -44471646 + AT_rich Low_complexity Low_complexity 1 24 0 8 1175 1208 118 11 16 chr11 77372222 77372411 -44471445 + B2_Mm2 SINE B2 1 188 -7 8 1175 25 31 0 0 chr11 77372507 77372539 -44471317 + AT_rich Low_complexity Low_complexity 1 32 0 8 1175 321 169 36 0 chr11 77372711 77372794 -44471062 + GA-rich Low_complexity Low_complexity 4 89 0 8 1175 296 316 13 0 chr11 77372934 77373013 -44470843 - B3A SINE B2 -109 89 10 8 1175 437 239 110 79 chr11 77373057 77373184 -44470672 - ID_B1 SINE B4 -13 211 81 8 1175 1033 68 15 0 chr11 77374127 77374259 -44469597 + B1_Mus2 SINE Alu 1 134 -13 8 1175 284 284 0 15 chr11 77374444 77374512 -44469344 - PB1D10 SINE Alu 0 117 51 8 1175 704 241 72 86 chr11 77374868 77375077 -44468779 - B3 SINE B2 -2 214 9 8 1175 454 278 224 16 chr11 77375128 77375311 -44468545 + ID_B1 SINE B4 2 222 -2 8 1175 757 185 22 15 chr11 77375347 77375484 -44468372 + B1_Mur1 SINE Alu 9 146 -3 8 1175 621 297 7 7 chr11 77375629 77375778 -44468078 - RSINE1 SINE B4 -14 151 3 8 1175 384 22 0 0 chr11 77375942 77375987 -44467869 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1175 330 302 16 181 chr11 77376036 77376153 -44467703 + B4 SINE B4 2 88 -204 9 1175 361 247 13 13 chr11 77376153 77376231 -44467625 + B1_Mur3 SINE Alu 3 80 -69 9 1175 533 108 72 41 chr11 77376280 77376377 -44467479 + RMER6B LTR ERVK 106 205 -256 9 1175 790 156 18 78 chr11 77376401 77376568 -44467288 + RMER6B LTR ERVK 303 459 -2 9 1175 706 119 28 0 chr11 77376722 77376831 -44467025 - PB1D9 SINE Alu -8 112 1 9 1175 544 252 0 0 chr11 77376924 77377023 -44466833 - RSINE1 SINE B4 -65 100 2 9 1175 207 162 0 0 chr11 77377069 77377106 -44466750 + GA-rich Low_complexity Low_complexity 3 39 0 9 1175 1257 99 50 0 chr11 77377724 77377906 -44465950 - B2_Mm2 SINE B2 -2 193 3 9 1175 218 174 196 0 chr11 77377940 77377986 -44465870 - B1_Mus2 SINE Alu -12 135 81 9 1175 448 220 65 21 chr11 77378190 77378283 -44465573 - PB1D7 SINE Alu 0 120 24 9 1175 421 277 119 6 chr11 77378287 77378447 -44465409 + MTE-int LTR MaLR 1343 1520 -60 9 1175 1479 236 59 40 chr11 77378472 77378843 -44465013 + MTEa LTR MaLR 2 379 0 9 1175 757 119 17 8 chr11 77379454 77379573 -44464283 - PB1D9 SINE Alu 0 120 1 9 1175 1215 112 32 0 chr11 77379573 77379760 -44464096 - B2_Mm2 SINE B2 0 195 2 9 1175 625 231 13 33 chr11 77379836 77379988 -44463868 - B1_Mur3 SINE Alu 0 149 1 9 1175 879 166 13 6 chr11 77380222 77380375 -44463481 - B1_Mur4 SINE Alu -1 149 1 9 1175 642 314 87 17 chr11 77380504 77380734 -44463122 - B4A SINE B4 -42 250 5 9 1175 285 29 0 0 chr11 77380804 77380838 -44463018 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1175 448 281 20 33 chr11 77380967 77381118 -44462738 - B1F SINE Alu 0 149 1 9 1175 270 0 0 0 chr11 77381129 77381159 -44462697 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 9 1175 1188 108 0 0 chr11 77381160 77381318 -44462538 - B2_Mm2 SINE B2 -37 158 1 9 1175 382 282 41 77 chr11 77381318 77381514 -44462342 - L1MC LINE L1 -2846 3300 3112 9 1175 389 252 115 10 chr11 77381531 77381635 -44462221 + RSINE1 SINE B4 8 122 -43 9 1175 535 340 19 13 chr11 77381643 77381801 -44462055 - B3A SINE B2 -38 160 2 9 1175 489 186 213 33 chr11 77381909 77382031 -44461825 + B1_Mur2 SINE Alu 5 148 -1 9 1175 382 303 10 0 chr11 77382178 77382277 -44461579 - PB1D7 SINE Alu -20 100 1 9 1175 432 252 269 6 chr11 77382879 77383039 -44460817 - ID_B1 SINE B4 -18 206 5 9 1175 645 206 0 0 chr11 77383104 77383211 -44460645 + B1_Mur2 SINE Alu 2 108 -41 9 1175 463 319 262 0 chr11 77383380 77383540 -44460316 - ID_B1 SINE B4 -17 207 6 9 1175 494 246 90 69 chr11 77383614 77383758 -44460098 - B1_Mur1 SINE Alu -1 148 2 9 1175 25 0 0 0 chr11 77383759 77383784 -44460072 + AT_rich Low_complexity Low_complexity 1 25 0 9 1175 768 131 0 34 chr11 77384058 77384177 -44459679 - B1_Mm SINE Alu -15 132 18 9 1175 338 362 51 26 chr11 77384081 77384237 -44459619 - B4 SINE B4 -88 204 45 9 1175 1069 220 0 19 chr11 77384613 77384826 -44459030 + B3 SINE B2 2 210 -6 9 1175 594 250 34 14 chr11 77384905 77385051 -44458805 + B1_Mur1 SINE Alu 1 149 0 9 1175 265 197 15 15 chr11 77385439 77385506 -44458350 - Charlie1a DNA MER1_type -799 656 590 9 1175 1042 100 129 0 chr11 77385611 77385781 -44458075 + B2_Mm2 SINE B2 2 193 -2 9 1175 1446 48 32 11 chr11 77385907 77386097 -44457759 + B2_Mm2 SINE B2 2 195 0 9 1175 569 246 21 42 chr11 77386543 77386728 -44457128 + B3A SINE B2 4 185 -31 9 1175 22 56 0 0 chr11 77386731 77386767 -44457089 + AT_rich Low_complexity Low_complexity 1 36 0 9 1175 888 83 106 0 chr11 77386976 77387108 -44456748 + B1_Mus2 SINE Alu 1 146 -1 9 1175 232 200 17 0 chr11 77387350 77387410 -44456446 + A-rich Low_complexity Low_complexity 6 66 0 9 1175 195 139 0 0 chr11 77387895 77387931 -44455925 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 9 1175 980 120 40 57 chr11 77387957 77388133 -44455723 - B2_Mm2 SINE B2 -22 173 1 9 1175 185 65 32 0 chr11 77388935 77388966 -44454890 + (TA)n Simple_repeat Simple_repeat 1 32 0 9 1175 549 277 92 0 chr11 77389233 77389374 -44454482 + RSINE1 SINE B4 12 165 0 9 1175 579 318 99 106 chr11 77389474 77389578 -44454278 - B4 SINE B4 -1 291 192 9 1175 1275 48 0 14 chr11 77389578 77389726 -44454130 - B1_Mus1 SINE Alu -1 147 2 9 1175 579 318 99 106 chr11 77389726 77389913 -44453943 - B4 SINE B4 -101 191 2 9 1175 422 270 30 0 chr11 77390376 77390476 -44453380 + B1_Mur2 SINE Alu 39 141 -8 9 1175 237 114 0 87 chr11 77390505 77390562 -44453294 - B1_Mur3 SINE Alu -6 144 92 9 1175 507 188 83 0 chr11 77390585 77390681 -44453175 - B1_Mur3 SINE Alu -7 142 39 9 1175 247 235 56 42 chr11 77390619 77390690 -44453166 - MT2B LTR ERVL -343 258 187 9 1175 22 35 0 0 chr11 77390882 77390911 -44452945 + AT_rich Low_complexity Low_complexity 1 29 0 9 1175 1133 63 35 0 chr11 77391006 77391149 -44452707 - B1_Mus1 SINE Alu 0 148 1 9 1175 511 258 87 16 chr11 77391219 77391345 -44452511 + B1F SINE Alu 7 141 -8 9 1175 3146 38 0 0 chr11 77391388 77391734 -44452122 + ORR1A0 LTR MaLR 1 346 0 9 1175 28 29 0 0 chr11 77391785 77391820 -44452036 + AT_rich Low_complexity Low_complexity 1 35 0 9 1175 703 314 17 0 chr11 77392585 77392731 -44451125 + B3 SINE B2 17 165 -51 9 1175 513 0 0 0 chr11 77392731 77392788 -44451068 + (CATA)n Simple_repeat Simple_repeat 2 58 0 9 1175 703 314 17 0 chr11 77392788 77392813 -44451043 + B3 SINE B2 166 190 -26 9 1175 22 80 0 0 chr11 77392895 77392945 -44450911 + AT_rich Low_complexity Low_complexity 1 50 0 9 1175 786 200 0 65 chr11 77393056 77393211 -44450645 + B1_Mus1 SINE Alu 3 147 -1 9 1175 682 242 163 11 chr11 77393645 77393829 -44450027 + B3 SINE B2 2 213 -3 9 1175 663 217 47 0 chr11 77393977 77394106 -44449750 + B1_Mus1 SINE Alu 1 135 -13 9 1175 21 0 0 0 chr11 77394188 77394209 -44449647 + AT_rich Low_complexity Low_complexity 1 21 0 9 1175 574 246 33 0 chr11 77394248 77394370 -44449486 + RSINE1 SINE B4 2 127 -38 9 1175 772 159 14 48 chr11 77394502 77394647 -44449209 - B1_Mur1 SINE Alu -1 148 9 9 1175 311 134 21 1 chr11 77395141 77395239 -44448617 - L1M4 LINE L1 -840 5338 5238 9 1175 476 91 39 0 chr11 77395308 77395385 -44448471 + B2_Mm2 SINE B2 111 190 -5 9 1175 534 327 71 36 chr11 77395387 77395651 -44448205 + MER44C DNA MER2_type 142 410 -323 9 1175 637 259 35 14 chr11 77395652 77395797 -44448059 + B1_Mur3 SINE Alu 1 148 -1 9 1175 354 324 62 120 chr11 77395807 77396116 -44447740 + B4A SINE B4 2 292 0 9 1175 722 288 18 54 chr11 77396161 77396385 -44447471 + B3A SINE B2 1 216 0 9 1175 892 161 21 7 chr11 77396430 77396574 -44447282 + B1_Mur2 SINE Alu 1 146 -3 9 1175 533 266 64 13 chr11 77396594 77396750 -44447106 + MER44C DNA MER2_type 443 606 -127 9 1175 1214 200 3 46 chr11 77397166 77397433 -44446423 + BGLII_B LTR ERVK 1 255 -186 9 1175 1104 80 49 12 chr11 77397433 77397597 -44446259 + B2_Mm2 SINE B2 1 170 -25 9 1175 304 49 0 0 chr11 77397636 77397677 -44446179 - B3 SINE B2 -175 41 1 9 1175 1229 161 29 0 chr11 77397693 77397898 -44445958 + BGLII_B LTR ERVK 231 441 0 9 1175 366 319 42 65 chr11 77398097 77398265 -44445591 + MER21B LTR ERV1 131 294 -569 9 1175 580 284 157 13 chr11 77398411 77398646 -44445210 + MER21B LTR ERV1 493 761 -102 9 1175 446 215 2 14 chr11 77399308 77399398 -44444458 + B1_Mur3 SINE Alu 4 93 -27 9 1175 653 191 367 6 chr11 77399415 77399573 -44444283 - B3 SINE B2 -1 215 1 9 1175 444 329 16 97 chr11 77399606 77399791 -44444065 + B3A SINE B2 4 173 -25 9 1175 279 0 0 0 chr11 77399796 77399827 -44444029 + (TA)n Simple_repeat Simple_repeat 1 31 0 9 1175 1553 64 16 0 chr11 77399914 77400101 -44443755 - B2_Mm2 SINE B2 -3 192 3 9 1175 545 152 32 32 chr11 77400168 77400263 -44443593 + B1_Mm SINE Alu 2 96 -51 9 1175 985 151 27 0 chr11 77400268 77400414 -44443442 + B1_Mur4 SINE Alu 1 150 0 9 1175 1224 181 4 85 chr11 77400427 77400662 -44443194 + B3 SINE B2 1 216 0 9 1175 918 177 0 26 chr11 77400789 77400940 -44442916 + B1_Mur3 SINE Alu 1 147 -2 9 1175 252 0 0 0 chr11 77401112 77401140 -44442716 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1175 29 28 0 0 chr11 77401247 77401283 -44442573 + AT_rich Low_complexity Low_complexity 1 36 0 9 1175 665 254 173 11 chr11 77401313 77401504 -44442352 - ID_B1 SINE B4 -2 222 1 9 1175 505 296 73 18 chr11 77401511 77401676 -44442180 - B3A SINE B2 -20 175 2 9 1175 872 204 96 35 chr11 77401759 77401957 -44441899 - B3 SINE B2 -6 210 1 9 1175 1063 126 53 37 chr11 77402875 77403064 -44440792 + B2_Mm2 SINE B2 2 193 -2 9 1175 1132 90 7 0 chr11 77403185 77403329 -44440527 + B1_Mus1 SINE Alu 4 148 0 9 1175 1617 67 0 0 chr11 77403579 77403772 -44440084 + B2_Mm1t SINE B2 1 193 0 9 1175 1201 49 28 0 chr11 77403849 77403991 -44439865 + B1_Mm SINE Alu 2 147 0 9 1175 187 0 0 108 chr11 77403991 77404028 -44439828 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1175 1121 58 73 0 chr11 77404045 77404182 -44439674 + B1_Mus1 SINE Alu 1 147 -1 9 1175 335 337 0 31 chr11 77404442 77404540 -44439316 + B1F SINE Alu 3 97 -52 9 1175 389 336 24 8 chr11 77404558 77404684 -44439172 + ID_B1 SINE B4 84 211 -13 9 1175 1248 48 7 0 chr11 77404695 77404841 -44439015 - B1_Mus2 SINE Alu 0 147 1 9 1175 353 289 137 26 chr11 77405209 77405326 -44438530 + RSINE1 SINE B4 3 132 -33 9 1175 229 177 48 16 chr11 77405436 77405499 -44438357 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1175 348 311 57 25 chr11 77405754 77405876 -44437980 + MER20 DNA MER1_type 4 129 -90 1 1175 772 97 0 0 chr11 77405890 77405993 -44437863 + B2_Mm2 SINE B2 15 117 -78 1 1175 610 268 6 38 chr11 77406312 77406471 -44437385 + RSINE1 SINE B4 8 161 -4 1 1175 3491 128 12 40 chr11 77406527 77407097 -44436759 + RLTR12A LTR ERVK 11 564 -4 1 1175 1305 21 0 7 chr11 77407414 77407558 -44436298 + B1_Mus2 SINE Alu 5 147 0 1 1175 207 108 27 0 chr11 77407636 77407673 -44436183 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 1 1175 1748 36 0 0 chr11 77407676 77407868 -44435988 + B2_Mm1t SINE B2 2 193 0 1 1175 326 347 27 20 chr11 77407907 77408054 -44435802 + B1F SINE Alu 1 148 -1 1 1175 256 321 161 0 chr11 77408299 77408380 -44435476 + ID_B1 SINE B4 93 186 -38 1 1175 802 240 40 11 chr11 77408460 77408637 -44435219 - B3 SINE B2 -34 182 1 1 1175 1314 113 0 26 chr11 77408670 77408860 -44434996 + B2_Mm2 SINE B2 2 186 -9 1 1175 1627 37 5 16 chr11 77409050 77409243 -44434613 - B2_Mm1a SINE B2 -1 192 2 1 1175 451 287 9 21 chr11 77409281 77409404 -44434452 + PB1 SINE Alu 8 120 0 1 1175 437 282 276 0 chr11 77409423 77409593 -44434263 + ID_B1 SINE B4 1 217 -7 1 1175 1151 82 7 40 chr11 77410209 77410361 -44433495 + B1_Mus1 SINE Alu 2 148 0 1 1175 575 255 34 41 chr11 77410393 77410540 -44433316 + B1F SINE Alu 4 149 0 1 1175 843 237 59 5 chr11 77410544 77410731 -44433125 + B3 SINE B2 3 199 -17 1 1175 267 133 0 0 chr11 77410767 77410812 -44433044 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1175 26 64 0 0 chr11 77410828 77410875 -44432981 + AT_rich Low_complexity Low_complexity 1 47 0 1 1175 610 254 7 37 chr11 77410943 77411078 -44432778 + B3 SINE B2 2 132 -84 1 1175 1691 156 25 0 chr11 77411076 77411352 -44432504 + ORR1B1 LTR MaLR 112 394 0 1 1175 27 49 0 0 chr11 77411372 77411413 -44432443 + AT_rich Low_complexity Low_complexity 1 41 0 1 1175 1128 107 0 35 chr11 77411424 77411490 -44432366 + B2_Mm2 SINE B2 2 65 -130 1 1175 3372 53 8 10 chr11 77411490 77411891 -44431965 + MTB LTR MaLR 1 400 0 1 1175 1128 107 0 35 chr11 77411891 77411998 -44431858 + B2_Mm2 SINE B2 66 169 -26 1 1175 365 90 292 35 chr11 77412057 77412168 -44431688 + B2_Mm2 SINE B2 47 189 -6 1 1175 348 100 80 67 chr11 77412405 77412480 -44431376 + B2_Mm2 SINE B2 113 188 -7 1 1175 1507 67 6 6 chr11 77412485 77412666 -44431190 + B2_Mm2 SINE B2 1 181 -14 1 1175 275 257 29 0 chr11 77412719 77412789 -44431067 + PB1D10 SINE Alu 36 107 -10 1 1175 1757 31 0 5 chr11 77412825 77413019 -44430837 + B2_Mm1a SINE B2 1 193 0 1 1175 1174 82 7 0 chr11 77413038 77413184 -44430672 + B1_Mus2 SINE Alu 1 147 0 1 1175 520 244 76 13 chr11 77413207 77413365 -44430491 + B2_Mm2 SINE B2 28 195 0 1 1175 323 234 15 15 chr11 77413392 77413457 -44430399 + ID4_ SINE ID 16 80 -3 1 1175 180 97 0 0 chr11 77413524 77413555 -44430301 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1175 314 340 56 9 chr11 77413792 77413899 -44429957 + RSINE1 SINE B4 8 119 -46 1 1175 529 287 0 0 chr11 77414003 77414111 -44429745 + RSINE1 SINE B4 23 130 -35 1 1175 672 230 5 128 chr11 77414312 77414516 -44429340 + B3 SINE B2 9 187 -8 1 1175 1445 99 16 0 chr11 77414535 77414727 -44429129 + B2_Mm2 SINE B2 1 195 0 1 1175 984 119 21 14 chr11 77414729 77414874 -44428982 + B1_Mus2 SINE Alu 1 146 -1 1 1175 25 51 0 0 chr11 77415474 77415513 -44428343 + AT_rich Low_complexity Low_complexity 1 39 0 1 1175 278 198 340 10 chr11 77415642 77415658 -44428198 - ID_B1 SINE B4 -1 223 95 1 1175 352 182 12 49 chr11 77415658 77415739 -44428117 - PB1D9 SINE Alu -29 91 14 1 1175 261 0 0 0 chr11 77415779 77415808 -44428048 + (CCA)n Simple_repeat Simple_repeat 2 30 0 1 1175 493 167 174 58 chr11 77415812 77415933 -44427923 - B1_Mur2 SINE Alu -5 144 10 1 1175 260 323 98 29 chr11 77416003 77416105 -44427751 + ID_B1 SINE B4 88 196 -28 1 1175 232 310 86 72 chr11 77416105 77416142 -44427714 + B1F SINE Alu 7 147 -2 1 1175 23 0 0 0 chr11 77416146 77416169 -44427687 + AT_rich Low_complexity Low_complexity 1 23 0 1 1175 521 247 75 65 chr11 77416169 77416316 -44427540 + B3 SINE B2 21 172 -44 1 1175 537 121 0 0 chr11 77416316 77416399 -44427457 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1175 521 247 75 65 chr11 77416399 77416437 -44427419 + B3 SINE B2 173 208 -8 1 1175 251 125 42 0 chr11 77416437 77416485 -44427371 + (CATA)n Simple_repeat Simple_repeat 1 50 0 1 1175 479 269 39 62 chr11 77416623 77416811 -44427045 - ID_B1 SINE B4 -9 215 43 1 1175 290 257 28 14 chr11 77417008 77417079 -44426777 + ID4 SINE ID 9 80 -3 1 1175 880 53 9 0 chr11 77417150 77417264 -44426592 + B2_Mm2 SINE B2 2 116 -79 1 1175 521 267 147 55 chr11 77417264 77417482 -44426374 + B4A SINE B4 12 249 -43 1 1175 207 171 0 0 chr11 77417499 77417534 -44426322 + CT-rich Low_complexity Low_complexity 1 35 0 1 1175 477 220 104 22 chr11 77417573 77417708 -44426148 + B1_Mur1 SINE Alu 4 149 0 1 1175 1080 103 0 27 chr11 77417712 77417861 -44425995 + B1_Mus2 SINE Alu 3 147 0 1 1175 233 296 173 0 chr11 77418525 77418606 -44425250 + ID_B1 SINE B4 78 172 -52 1 1175 362 225 107 0 chr11 77418534 77418620 -44425236 + PB1D10 SINE Alu 14 106 -11 1 1175 687 162 24 139 chr11 77418856 77419021 -44424835 + B1_Mur1 SINE Alu 4 149 0 1 1175 545 227 33 16 chr11 77419029 77419150 -44424706 + ID_B1 SINE B4 81 203 -21 1 1175 290 255 116 11 chr11 77419375 77419470 -44424386 + PB1D7 SINE Alu 3 107 -13 1 1175 29 47 0 0 chr11 77421134 77421177 -44422679 + GC_rich Low_complexity Low_complexity 1 43 0 1 1175 27 0 0 0 chr11 77421463 77421490 -44422366 + GC_rich Low_complexity Low_complexity 1 27 0 1 1175 599 219 35 0 chr11 77421964 77422078 -44421778 + B1_Mur1 SINE Alu 31 148 -1 1 1175 323 166 20 165 chr11 77422235 77422355 -44421501 + PB1D7 SINE Alu 3 104 -13 1 1175 310 222 82 47 chr11 77422385 77422470 -44421386 + B3A SINE B2 9 96 -102 1 1175 198 0 0 0 chr11 77422471 77422493 -44421363 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1175 512 177 0 26 chr11 77422527 77422641 -44421215 + A-rich Low_complexity Low_complexity 1 111 0 1 1175 1245 61 0 13 chr11 77422641 77422790 -44421066 + B1_Mm SINE Alu 1 147 0 1 1175 512 177 0 26 chr11 77422790 77422826 -44421030 + A-rich Low_complexity Low_complexity 112 147 0 1 1175 906 203 0 0 chr11 77422838 77422981 -44420875 + B1_Mur3 SINE Alu 1 143 -6 1 1175 346 264 57 107 chr11 77423038 77423178 -44420678 + ID_B1 SINE B4 84 216 -8 1 1175 463 184 243 0 chr11 77423250 77423386 -44420470 + B4A SINE B4 1 169 -123 1 1175 785 70 13 18 chr11 77423364 77423501 -44420355 - B1_Mm SINE Alu -14 135 1 1 1175 416 279 55 55 chr11 77423545 77423708 -44420148 + RSINE1 SINE B4 3 165 0 1 1175 498 195 0 0 chr11 77423751 77423838 -44420018 + B1_Mur3 SINE Alu 2 88 -61 1 1175 485 163 57 0 chr11 77423919 77424014 -44419842 + PB1D10 SINE Alu 1 106 -14 1 1175 354 45 0 0 chr11 77424318 77424362 -44419494 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1175 234 0 0 0 chr11 77424652 77424678 -44419178 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1175 814 146 0 0 chr11 77424680 77424803 -44419053 - B1_Mus1 SINE Alu -25 123 1 1 1175 537 232 36 0 chr11 77425081 77425193 -44418663 + PB1D7 SINE Alu 2 117 -3 1 1175 357 131 0 0 chr11 77425196 77425257 -44418599 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1 1175 301 317 48 8 chr11 77425258 77425382 -44418474 - L1MC5 LINE L1 -520 7441 7313 1 1175 1194 45 0 0 chr11 77425409 77425543 -44418313 + B1_Mus1 SINE Alu 2 135 -13 1 1175 572 234 0 0 chr11 77425648 77425759 -44418097 - B1_Mur4 SINE Alu -7 143 33 1 1175 214 204 37 46 chr11 77425777 77425808 -44418048 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 1 1175 348 24 0 0 chr11 77425808 77425849 -44418007 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1175 234 162 56 56 chr11 77425849 77425931 -44417925 + G-rich Low_complexity Low_complexity 1 82 0 1 1175 827 22 5 118 chr11 77425932 77426135 -44417721 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 1 1175 275 271 56 14 chr11 77426146 77426217 -44417639 - B3A SINE B2 -23 175 102 1 1175 411 326 7 34 chr11 77426268 77426414 -44417442 - B1F1 SINE Alu -7 142 1 1 1175 214 383 58 25 chr11 77426850 77426980 -44416876 - MIR SINE MIR -100 162 36 1 1175 299 207 0 17 chr11 77427247 77427306 -44416550 + B1F SINE Alu 6 63 -86 1 1175 588 140 0 21 chr11 77427434 77427529 -44416327 - B1_Mur2 SINE Alu 0 149 57 1 1175 789 172 194 32 chr11 77427567 77427753 -44416103 - B3 SINE B2 0 216 1 1 1175 341 268 46 98 chr11 77428174 77428198 -44415658 + B4A SINE B4 71 215 -77 1 1175 882 124 31 0 chr11 77428198 77428327 -44415529 + B1_Mur4 SINE Alu 6 138 -12 1 1175 204 40 0 0 chr11 77428328 77428353 -44415503 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1175 204 247 93 102 chr11 77428367 77428475 -44415381 + MIRm SINE MIR 52 158 -118 1 1175 551 269 135 68 chr11 77429035 77429242 -44414614 - ID_B1 SINE B4 -2 222 2 1 1175 655 159 62 0 chr11 77429377 77429490 -44414366 - PB1D9 SINE Alu 0 120 1 1 1175 228 35 0 0 chr11 77429496 77429525 -44414331 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1175 283 312 38 0 chr11 77429588 77429668 -44414188 + ID_B1 SINE B4 82 164 -60 1 1175 876 95 24 0 chr11 77429665 77429791 -44414065 + B1_Mur3 SINE Alu 13 141 -8 1 1175 1026 80 0 14 chr11 77429801 77429940 -44413916 + B2_Mm2 SINE B2 3 139 -56 1 1175 541 62 12 0 chr11 77430038 77430118 -44413738 + L1Md_F3 LINE L1 6496 6576 -8 1 1175 216 0 0 0 chr11 77430195 77430219 -44413637 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1175 246 128 0 0 chr11 77430223 77430262 -44413594 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1175 216 97 0 0 chr11 77430313 77430344 -44413512 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1175 180 111 0 0 chr11 77430506 77430533 -44413323 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1175 819 162 0 62 chr11 77430533 77430678 -44413178 - B1_Mur4 SINE Alu -13 137 2 1 1175 1036 199 73 15 chr11 77430702 77430906 -44412950 - B3 SINE B2 0 216 1 1 1175 790 214 28 0 chr11 77431627 77431772 -44412084 + B1_Mur2 SINE Alu 1 149 0 1 1175 271 262 0 140 chr11 77431772 77431857 -44411999 + B4A SINE B4 219 291 -1 1 1175 441 81 0 0 chr11 77431857 77431919 -44411937 + (CATA)n Simple_repeat Simple_repeat 1 62 0 1 1175 354 336 85 17 chr11 77431944 77432062 -44411794 + ID_B1 SINE B4 32 157 -67 1 1175 252 242 0 61 chr11 77432335 77432384 -44411472 + tRNA-Ala-GCA tRNA tRNA 9 57 -18 1 1175 204 40 0 0 chr11 77432384 77432409 -44411447 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1175 252 242 0 61 chr11 77432409 77432425 -44411431 + tRNA-Ala-GCA tRNA tRNA 58 70 -5 1 1175 199 310 92 25 chr11 77432425 77432544 -44411312 + MIR SINE MIR 131 257 -5 1 1175 221 22 20 61 chr11 77432553 77432602 -44411254 + (TTAA)n Simple_repeat Simple_repeat 4 50 0 1 1175 279 341 83 90 chr11 77432638 77432938 -44410918 - MLT1K LTR MaLR -279 316 19 1 1175 242 29 29 0 chr11 77433070 77433105 -44410751 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1175 326 309 63 52 chr11 77433279 77433351 -44410505 + ID SINE ID 1 82 -142 1 1175 270 0 0 0 chr11 77433351 77433381 -44410475 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1175 326 309 63 52 chr11 77433381 77433482 -44410374 + ID_B1 SINE B4 83 176 -48 1 1175 520 209 36 9 chr11 77433392 77433503 -44410353 + PB1D7 SINE Alu 7 120 0 1 1175 529 289 26 45 chr11 77433506 77433645 -44410211 + RSINE1 SINE B4 3 139 -26 1 1175 384 22 0 0 chr11 77433645 77433690 -44410166 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1175 529 289 26 45 chr11 77433690 77433706 -44410150 + RSINE1 SINE B4 140 155 -10 1 1175 450 0 0 0 chr11 77433751 77433801 -44410055 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 1175 202 279 33 0 chr11 77433801 77433862 -44409994 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1175 370 194 0 40 chr11 77433862 77433937 -44409919 + B4A SINE B4 195 266 -26 1 1175 3353 122 22 80 chr11 77433948 77434485 -44409371 - RLTR12A LTR ERVK -12 556 44 1 1175 1506 65 11 5 chr11 77434485 77434670 -44409186 + B2_Mm2 SINE B2 3 188 -7 1 1175 3353 122 22 80 chr11 77434670 77434722 -44409134 - RLTR12A LTR ERVK -525 43 1 1 1175 1249 56 7 0 chr11 77434771 77434915 -44408941 - B1_Mm SINE Alu -1 146 2 1 1175 26 0 0 0 chr11 77434940 77434966 -44408890 + AT_rich Low_complexity Low_complexity 1 26 0 1 1175 899 224 33 116 chr11 77435001 77435049 -44408807 + ID SINE ID 2 39 -185 1 1175 1103 73 73 0 chr11 77435049 77435186 -44408670 + B1_Mm SINE Alu 1 147 0 1 1175 899 224 33 116 chr11 77435186 77435379 -44408477 + ID_B1 SINE B4 40 223 -1 1 1175 1186 63 28 0 chr11 77435383 77435526 -44408330 + B1_Mus1 SINE Alu 2 148 0 1 1175 345 125 0 0 chr11 77435526 77435582 -44408274 + (A)n Simple_repeat Simple_repeat 1 56 0 1 1175 208 233 0 0 chr11 77436145 77436188 -44407668 + CT-rich Low_complexity Low_complexity 2 44 0 1 1175 575 147 19 29 chr11 77436190 77436295 -44407561 - B1_Mur4 SINE Alu 0 150 47 1 1175 1594 52 0 35 chr11 77436483 77436684 -44407172 + B2_Mm2 SINE B2 2 195 0 1 1175 324 0 0 0 chr11 77436684 77436720 -44407136 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1 1175 336 360 19 52 chr11 77436731 77436886 -44406970 + RSINE1 SINE B4 16 165 0 1 1175 312 137 0 0 chr11 77436927 77436978 -44406878 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 1 1175 466 324 18 0 chr11 77437002 77437113 -44406743 + RSINE1 SINE B4 37 149 -16 1 1175 243 0 0 0 chr11 77437114 77437141 -44406715 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1175 429 20 0 0 chr11 77437406 77437456 -44406400 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 1175 222 376 11 11 chr11 77437515 77437547 -44406309 + B4A SINE B4 53 84 -208 1 1175 388 278 27 43 chr11 77437547 77437685 -44406171 + PB1 SINE Alu 1 125 -23 1 1175 261 0 0 0 chr11 77438825 77438854 -44405002 + (CCA)n Simple_repeat Simple_repeat 2 30 0 1 1175 1038 204 48 19 chr11 77439299 77439509 -44404347 + B3 SINE B2 1 216 0 1 1175 397 200 264 9 chr11 77439577 77439683 -44404173 + B3A SINE B2 1 133 -65 1 1175 236 312 121 41 chr11 77439756 77439962 -44403894 + MIR SINE MIR 5 228 -40 1 1175 828 181 21 0 chr11 77440075 77440219 -44403637 + B1_Mur3 SINE Alu 1 147 -2 1 1175 21 0 0 0 chr11 77440287 77440308 -44403548 + AT_rich Low_complexity Low_complexity 1 21 0 1 1175 238 211 211 0 chr11 77440626 77440683 -44403173 - ID4_ SINE ID 0 83 15 1 1175 416 231 56 37 chr11 77440979 77441072 -44402784 + B1F SINE Alu 3 97 -52 1 1175 983 190 40 5 chr11 77441072 77441273 -44402583 + MTD LTR MaLR 1 208 -211 1 1175 1077 128 0 26 chr11 77441274 77441426 -44402430 + B1_Mus1 SINE Alu 1 148 0 1 1175 198 118 0 0 chr11 77441426 77441460 -44402396 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1175 483 192 215 37 chr11 77441480 77441615 -44402241 + MTD LTR MaLR 197 355 -66 1 1175 653 268 12 23 chr11 77441611 77441783 -44402073 + ID_B1 SINE B4 50 219 -5 1 1175 414 274 16 79 chr11 77441861 77441988 -44401868 + RSINE1 SINE B4 44 162 -3 1 1175 215 0 0 62 chr11 77442015 77442047 -44401809 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1 1175 606 186 11 33 chr11 77442047 77442230 -44401626 + GA-rich Low_complexity Low_complexity 2 180 0 1 1175 324 234 13 13 chr11 77442303 77442381 -44401475 + ID4_ SINE ID 6 83 0 1 1175 180 0 0 0 chr11 77442396 77442416 -44401440 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1175 207 0 0 0 chr11 77442418 77442441 -44401415 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1175 869 152 15 8 chr11 77442443 77442576 -44401280 - B1_Mus2 SINE Alu -13 134 1 1 1175 1151 82 14 0 chr11 77442620 77442767 -44401089 + B1_Mur4 SINE Alu 2 150 0 1 1175 240 111 0 0 chr11 77442767 77442812 -44401044 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1 1175 314 217 112 4 chr11 77443327 77443410 -44400446 + B3 SINE B2 47 140 -76 1 1175 219 69 0 0 chr11 77443467 77443496 -44400360 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 1175 540 0 0 0 chr11 77443496 77443556 -44400300 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1175 344 228 228 0 chr11 77443556 77443657 -44400199 - RSINE1 SINE B4 -41 124 1 1 1175 434 294 0 29 chr11 77443661 77443801 -44400055 - ID_B1 SINE B4 -1 223 88 1 1175 1241 34 7 0 chr11 77444268 77444414 -44399442 + B1_Mus2 SINE Alu 1 147 0 1 1175 183 42 0 0 chr11 77444428 77444452 -44399404 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1175 572 290 20 0 chr11 77444460 77444644 -44399212 + B3 SINE B2 5 198 0 1 1175 372 287 88 7 chr11 77444912 77445049 -44398807 + RSINE1 SINE B4 1 148 -17 1 1175 1300 85 11 0 chr11 77445148 77445324 -44398532 + B2_Mm1t SINE B2 1 178 -15 1 1175 428 85 365 9 chr11 77445338 77445445 -44398411 + B2_Mm2 SINE B2 47 191 -4 1 1175 543 16 0 0 chr11 77445611 77445675 -44398181 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 1 1175 961 53 0 29 chr11 77445688 77445699 -44398157 - B1_Mus2 SINE Alu -1 146 139 1 1175 207 0 0 0 chr11 77445699 77445722 -44398134 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1175 961 53 0 29 chr11 77445722 77445847 -44398009 - B1_Mus2 SINE Alu -9 138 14 1 1175 2084 132 117 6 chr11 77446173 77446532 -44397324 + Lx4A LINE L1 6660 7058 0 1 1175 1139 84 0 0 chr11 77446544 77446686 -44397170 + B1_Mus2 SINE Alu 5 146 -1 1 1175 387 0 0 0 chr11 77446686 77446729 -44397127 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1175 249 233 83 0 chr11 77446840 77446900 -44396956 + ID4_ SINE ID 1 65 -18 1 1175 519 17 0 0 chr11 77447024 77447084 -44396772 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1175 22 0 0 0 chr11 77447120 77447142 -44396714 + AT_rich Low_complexity Low_complexity 1 22 0 1 1175 866 158 0 27 chr11 77447160 77447310 -44396546 - B1_Mus2 SINE Alu -1 146 1 1 1175 489 181 0 0 chr11 77447486 77447580 -44396276 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1175 1042 199 24 186 chr11 77447580 77447962 -44395894 - ORR1C2 LTR MaLR -62 322 3 1 1175 185 241 0 53 chr11 77447977 77448034 -44395822 + MIRb SINE MIR 187 240 -28 1 1175 423 252 42 30 chr11 77448052 77448237 -44395619 - B3 SINE B2 0 195 15 1 1175 387 250 17 51 chr11 77448233 77448248 -44395608 - ID_B1 SINE B4 -29 195 185 1 1175 2239 102 45 0 chr11 77448248 77448561 -44395295 + ORR1A2 LTR MaLR 1 327 0 1 1175 387 250 17 51 chr11 77448561 77448663 -44395193 - ID_B1 SINE B4 -40 184 82 1 1175 752 171 60 67 chr11 77448826 77448976 -44394880 - B1_Mur4 SINE Alu -1 149 1 1 1175 548 265 73 0 chr11 77448982 77449118 -44394738 - ID_B1 SINE B4 -1 223 78 1 1175 240 295 104 0 chr11 77449121 77449164 -44394692 - B2_Mm1t SINE B2 -2 191 141 1 1175 547 26 26 0 chr11 77449164 77449241 -44394615 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1175 395 224 41 0 chr11 77449241 77449370 -44394486 - B3A SINE B2 -53 140 1 1 1175 337 167 17 0 chr11 77449509 77449580 -44394276 + B1F2 SINE Alu 35 110 -39 1 1175 863 98 138 0 chr11 77449597 77449720 -44394136 + B1_Mus1 SINE Alu 1 140 -8 1 1175 207 0 0 0 chr11 77449720 77449743 -44394113 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1175 1564 47 16 0 chr11 77449818 77450008 -44393848 + B2_Mm2 SINE B2 3 195 0 1 1175 228 35 0 0 chr11 77450691 77450720 -44393136 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1175 942 100 7 7 chr11 77450720 77450856 -44393000 - B1_Mur4 SINE Alu -9 141 5 1 1175 372 268 0 0 chr11 77450941 77451023 -44392833 - ID4 SINE ID 0 83 2 1 1175 558 253 181 0 chr11 77451062 77451244 -44392612 + B3 SINE B2 2 216 0 1 1175 679 195 60 13 chr11 77451293 77451444 -44392412 + B3 SINE B2 59 216 0 1 1175 1507 51 0 0 chr11 77451470 77451645 -44392211 + B2_Mm1a SINE B2 1 175 -18 1 1175 1048 94 7 0 chr11 77451671 77451809 -44392047 + B1_Mus2 SINE Alu 2 140 -7 1 1175 288 91 0 0 chr11 77451810 77451854 -44392002 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1175 1456 72 0 58 chr11 77451857 77452032 -44391824 + B2_Mm2 SINE B2 1 164 -31 1 1175 1169 75 0 0 chr11 77452032 77452179 -44391677 + B1_Mm SINE Alu 1 147 0 1 1175 1456 72 0 58 chr11 77452179 77452210 -44391646 + B2_Mm2 SINE B2 165 195 0 1 1175 760 188 28 0 chr11 77452245 77452389 -44391467 + B1_Mus1 SINE Alu 1 148 0 1 1175 1130 46 0 0 chr11 77452400 77452551 -44391305 + B2_Mm2 SINE B2 2 152 -43 1 1175 378 0 0 0 chr11 77452552 77452594 -44391262 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1175 1078 89 0 0 chr11 77452594 77452729 -44391127 - B1_Mus2 SINE Alu -12 135 1 1 1175 251 85 21 0 chr11 77452730 77452777 -44391079 + (TTTTTA)n Simple_repeat Simple_repeat 3 50 0 1 1175 1230 48 0 0 chr11 77452777 77452924 -44390932 - B1_Mm SINE Alu 0 147 1 1 1175 1227 114 43 0 chr11 77452928 77453112 -44390744 - B2_Mm1t SINE B2 0 193 2 1 1175 1293 58 10 78 chr11 77453582 77453748 -44390108 + B2_Mm1t SINE B2 3 160 -33 1 1175 279 0 0 0 chr11 77453748 77453779 -44390077 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1175 1293 58 10 78 chr11 77453779 77453816 -44390040 + B2_Mm1t SINE B2 161 192 -1 1 1175 371 235 129 40 chr11 77454120 77454244 -44389612 + B1F1 SINE Alu 2 136 -13 1 1175 771 90 7 14 chr11 77454834 77454980 -44388876 + (TC)n Simple_repeat Simple_repeat 2 146 0 1 1175 835 118 0 30 chr11 77454980 77455111 -44388745 - B1_Mur4 SINE Alu -19 131 5 1 1175 227 146 70 35 chr11 77455143 77455200 -44388656 - L1M4 LINE L1 -1353 4793 4735 1 1175 1135 41 0 45 chr11 77455732 77455886 -44387970 - B1_Mus2 SINE Alu 0 147 1 1 1175 226 333 67 33 chr11 77455886 77455976 -44387880 - RSINE1 SINE B4 -70 95 3 1 1175 189 0 0 0 chr11 77455981 77456002 -44387854 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1175 238 231 30 30 chr11 77456012 77456079 -44387777 - AluG_3 SINE Alu -90 221 155 1 1175 1160 83 12 0 chr11 77456083 77456252 -44387604 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 1 1175 1307 80 17 6 chr11 77456252 77456428 -44387428 - B2_Mm1t SINE B2 -15 178 1 1 1175 1174 164 14 5 chr11 77456536 77456744 -44387112 + B3 SINE B2 1 210 -6 1 1175 397 286 0 0 chr11 77456769 77456860 -44386996 - ID_B1 SINE B4 -85 139 49 1 1175 280 314 148 37 chr11 77456966 77457128 -44386728 + MER20 DNA MER1_type 1 180 -39 1 1175 1148 55 7 0 chr11 77457239 77457385 -44386471 + B1_Mm SINE Alu 1 147 0 1 1175 1115 80 0 0 chr11 77457480 77457618 -44386238 + B1_Mm SINE Alu 1 138 -9 1 1175 243 88 0 0 chr11 77458522 77458556 -44385300 + (GGA)n Simple_repeat Simple_repeat 1 34 0 1 1175 230 319 0 0 chr11 77458556 77458628 -44385228 - L2a LINE L2 -13 3413 3342 1 1175 407 258 142 0 chr11 77458640 77458760 -44385096 + RSINE1 SINE B4 3 139 -26 1 1175 198 0 0 0 chr11 77458804 77458826 -44385030 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 1 1175 464 225 0 20 chr11 77460652 77460784 -44383072 - B1_Mur3 SINE Alu -25 124 2 1 1175 311 154 0 0 chr11 77460787 77460839 -44383017 + RLTR11A2 LTR ERVK 145 196 -331 1 1175 1232 41 0 0 chr11 77460907 77461052 -44382804 + B1_Mm SINE Alu 2 146 -1 1 1175 302 98 20 0 chr11 77461120 77461171 -44382685 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 1 1175 812 133 16 0 chr11 77461194 77461322 -44382534 - B1_Mus2 SINE Alu -7 140 11 1 1175 242 291 70 43 chr11 77461324 77461439 -44382417 - MLT1A1 LTR MaLR -265 143 26 1 1175 219 114 0 0 chr11 77461643 77461678 -44382178 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 1175 744 181 72 0 chr11 77461709 77461847 -44382009 + B1_Mus1 SINE Alu 1 148 0 1 1175 291 54 0 0 chr11 77461847 77461884 -44381972 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1175 317 167 120 22 chr11 77461886 77461978 -44381878 + L1MC4 LINE L1 6914 7014 -1028 1 1175 349 161 16 0 chr11 77461978 77462040 -44381816 + B4A SINE B4 2 64 -228 1 1175 919 78 70 0 chr11 77462041 77462169 -44381687 + B1_Mus1 SINE Alu 2 138 -10 1 1175 299 44 22 0 chr11 77462246 77462291 -44381565 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1175 315 254 0 0 chr11 77462327 77462394 -44381462 + B3A SINE B2 2 68 -130 1 1175 210 71 0 0 chr11 77462394 77462422 -44381434 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 1175 319 254 67 158 chr11 77462610 77462774 -44381082 + B3A SINE B2 42 193 -5 1 146 1308 104 8 3 chr11 77462902 77463928 -44379928 + (CTGTG)n Simple_repeat Simple_repeat 1 1031 0 1 1176 529 186 315 6 chr11 77464047 77464209 -44379647 - B3 SINE B2 -4 212 1 1 1176 1630 42 0 0 chr11 77464348 77464541 -44379315 - B2_Mm1a SINE B2 0 193 1 1 1176 599 268 97 112 chr11 77464552 77464734 -44379122 + L1MC4 LINE L1 7108 7276 -766 1 1176 1284 20 0 0 chr11 77464734 77464881 -44378975 - B1_Mm SINE Alu 0 147 1 1 1176 599 274 125 89 chr11 77464881 77465078 -44378778 + L1MC4 LINE L1 7248 7474 -408 1 1176 540 244 118 7 chr11 77465163 77465344 -44378512 + B3 SINE B2 7 212 -4 1 1176 552 234 0 8 chr11 77465447 77465576 -44378280 + B3 SINE B2 88 215 -1 1 1176 1534 48 21 0 chr11 77465912 77466099 -44377757 + B2_Mm1a SINE B2 1 191 -2 1 1176 231 36 0 0 chr11 77466102 77466130 -44377726 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1176 896 188 66 151 chr11 77466521 77466658 -44377198 - RMER16 LTR ERVK 0 533 405 1 1176 212 0 0 35 chr11 77466658 77466687 -44377169 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1176 1076 52 0 15 chr11 77466687 77466823 -44377033 - B1_Mus2 SINE Alu -9 138 5 1 1176 896 188 66 151 chr11 77466823 77466857 -44376999 - RMER16 LTR ERVK -129 404 396 1 1176 1188 55 7 0 chr11 77466857 77467003 -44376853 - B1_Mus2 SINE Alu 0 147 1 1 1176 896 188 66 151 chr11 77467003 77467148 -44376708 - RMER16 LTR ERVK -138 395 243 1 1176 1081 108 0 0 chr11 77467156 77467304 -44376552 + B1_Mus1 SINE Alu 1 148 0 1 1176 249 198 0 0 chr11 77467304 77467385 -44376471 + A-rich Low_complexity Low_complexity 1 81 0 1 1176 344 106 0 120 chr11 77467424 77467499 -44376357 - RMER16 LTR ERVK -467 66 1 1 1176 347 306 9 18 chr11 77467676 77467789 -44376067 - MER82 DNA MER2_type -6 647 536 1 1176 1007 62 0 193 chr11 77467966 77468004 -44375852 + B1_Mus2 SINE Alu 2 39 -108 1 1176 1213 54 0 0 chr11 77468004 77468151 -44375705 + B1_Mus2 SINE Alu 1 147 0 1 1176 1007 62 0 193 chr11 77468151 77468293 -44375563 + B1_Mus2 SINE Alu 40 147 0 1 1176 574 193 151 0 chr11 77468665 77468784 -44375072 - B1_Mur4 SINE Alu -12 138 2 1 1176 1477 69 16 5 chr11 77468835 77469025 -44374831 - B2_Mm2 SINE B2 -1 194 3 1 1176 1052 55 0 0 chr11 77469034 77469161 -44374695 - B1_Mus2 SINE Alu -19 128 2 1 1176 342 0 0 0 chr11 77469218 77469256 -44374600 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1176 258 231 19 19 chr11 77469256 77469309 -44374547 - ID4 SINE ID -28 55 3 1 1176 243 0 0 0 chr11 77469321 77469348 -44374508 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1176 325 244 12 37 chr11 77469351 77469373 -44374483 - PB1D10 SINE Alu -13 104 26 1 1176 362 152 0 0 chr11 77469373 77469432 -44374424 - ID_B1 SINE B4 -59 165 107 1 1176 281 200 75 86 chr11 77469530 77469623 -44374233 + MT2A LTR ERVL 1 92 -441 1 1176 1264 27 7 0 chr11 77469652 77469798 -44374058 + B1_Mm SINE Alu 1 147 0 1 1176 198 103 0 0 chr11 77469827 77469856 -44374000 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1176 1166 77 79 45 chr11 77469869 77470046 -44373810 - B2_Mm2 SINE B2 -8 187 5 1 1176 23 0 0 0 chr11 77470095 77470118 -44373738 + AT_rich Low_complexity Low_complexity 1 23 0 1 1176 1332 65 5 42 chr11 77470142 77470334 -44373522 - B2_Mm2 SINE B2 -10 185 1 1 1176 869 182 193 0 chr11 77470357 77470538 -44373318 - B3 SINE B2 0 216 1 1 1176 3412 216 24 181 chr11 77470551 77471764 -44372092 - RMER1B Other Other -1 1065 44 1 1176 1299 179 214 19 chr11 77472218 77472536 -44371320 + MT2A LTR ERVL 85 464 -69 1 1176 1023 54 0 0 chr11 77472556 77472686 -44371170 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 1 1176 317 231 9 53 chr11 77473457 77473536 -44370320 - L1ME4a LINE L1 -12 6112 6038 1 1176 207 0 0 0 chr11 77473536 77473559 -44370297 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1176 317 231 9 53 chr11 77473559 77473593 -44370263 - L1ME4a LINE L1 -87 6037 6005 1 1176 330 265 0 48 chr11 77473630 77473733 -44370123 - PB1D7 SINE Alu 0 120 23 1 1176 1278 69 22 34 chr11 77474139 77474318 -44369538 - B2_Mm2 SINE B2 -18 177 1 1 1176 415 197 273 8 chr11 77474321 77474449 -44369407 - B3 SINE B2 0 216 55 1 1176 489 119 11 35 chr11 77474443 77474530 -44369326 - B1_Mus1 SINE Alu -63 85 1 1 1176 407 230 9 65 chr11 77474447 77474554 -44369302 - B4 SINE B4 -125 167 67 1 1176 2584 44 0 19 chr11 77474768 77475090 -44368766 + L1_Mus1 LINE L1 6252 6567 0 1 1176 205 337 12 35 chr11 77475214 77475300 -44368556 - L2a LINE L2 -1 3425 3342 1 1176 275 0 29 0 chr11 77475332 77475367 -44368489 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 1 1176 1136 75 0 39 chr11 77475367 77475520 -44368336 - B1_Mus2 SINE Alu 0 147 1 1 1176 783 160 7 27 chr11 77475704 77475852 -44368004 + B1_Mur4 SINE Alu 6 150 0 1 1176 516 253 30 37 chr11 77476017 77476181 -44367675 - RSINE1 SINE B4 0 165 3 1 1176 968 68 0 15 chr11 77476709 77476844 -44367012 - B1_Mus1 SINE Alu -1 147 15 1 1176 1591 32 16 5 chr11 77476860 77477051 -44366805 + B2_Mm1t SINE B2 1 193 0 1 1176 1093 74 0 0 chr11 77477897 77478032 -44365824 + B1_Mus2 SINE Alu 1 135 -12 1 1176 485 71 0 14 chr11 77478207 77478278 -44365578 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 1 1176 1135 89 0 0 chr11 77478279 77478425 -44365431 - B1_Mus2 SINE Alu 0 147 2 1 1176 1199 55 0 0 chr11 77478704 77478850 -44365006 - B1_Mus2 SINE Alu -1 146 1 1 1176 288 92 324 45 chr11 77478858 77478969 -44364887 - B2_Mm2 SINE B2 -7 188 47 1 1176 1109 142 11 11 chr11 77479016 77479194 -44364662 - B2_Mm1t SINE B2 -14 179 2 1 1176 297 162 0 0 chr11 77479338 77479406 -44364450 + T-rich Low_complexity Low_complexity 1 68 0 1 1176 1255 34 0 0 chr11 77479417 77479563 -44364293 - B1_Mm SINE Alu -1 146 1 1 1176 1412 210 39 28 chr11 77479563 77479920 -44363936 + MTD LTR MaLR 52 412 -7 1 1176 3383 82 43 2 chr11 77480242 77480705 -44363151 - RLTR45 LTR ERVK 0 482 1 1 1176 551 194 48 14 chr11 77480718 77480864 -44362992 - Lx9 LINE L1 0 7644 7494 1 1176 182 255 0 0 chr11 77480916 77480963 -44362893 - L2 LINE L2 -957 2462 2416 1 1176 518 219 18 0 chr11 77480993 77481107 -44362749 + PB1D7 SINE Alu 5 120 0 1 1176 1133 62 14 0 chr11 77481123 77481269 -44362587 + B1_Mus1 SINE Alu 1 148 0 1 1176 222 305 37 0 chr11 77481379 77481461 -44362395 + PB1 SINE Alu 39 123 -4 1 1176 1238 166 15 0 chr11 77481619 77481824 -44362032 - B3 SINE B2 -1 215 8 1 1176 329 233 34 23 chr11 77481861 77481949 -44361907 - B1F SINE Alu -53 96 8 1 1176 249 57 0 0 chr11 77482001 77482036 -44361820 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1176 1009 72 0 48 chr11 77482036 77482181 -44361675 - B1_Mus1 SINE Alu -10 138 1 1 1176 1197 166 13 63 chr11 77482376 77482614 -44361242 - Lx4A LINE L1 -7 7051 6826 1 1176 641 119 81 48 chr11 77482614 77482730 -44361126 + B1_Mur4 SINE Alu 30 150 0 1 1176 586 231 37 49 chr11 77482735 77482899 -44360957 - B3A SINE B2 -1 197 36 1 1176 732 217 7 20 chr11 77482999 77483145 -44360711 - B1_Mus2 SINE Alu -1 146 3 1 1176 198 0 0 0 chr11 77483251 77483273 -44360583 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1176 1148 121 6 11 chr11 77483423 77483580 -44360276 + B2_Mm1a SINE B2 1 158 -35 1 1176 189 0 0 0 chr11 77483580 77483601 -44360255 + (TAA)n Simple_repeat Simple_repeat 3 23 0 1 1176 1148 121 6 11 chr11 77483601 77483618 -44360238 + B2_Mm1a SINE B2 159 174 -19 1 1176 346 62 0 0 chr11 77483641 77483689 -44360167 - ORR1A4 LTR MaLR -8 321 274 1 1176 898 86 78 0 chr11 77483706 77483834 -44360022 - B1_Mm SINE Alu -9 138 1 1 1176 207 0 0 0 chr11 77483846 77483869 -44359987 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1176 1204 48 0 0 chr11 77483869 77484015 -44359841 - B1_Mm SINE Alu 0 147 2 1 1176 1244 195 8 18 chr11 77484017 77484289 -44359567 - ORR1A4 LTR MaLR -41 353 43 1 1176 1184 82 0 0 chr11 77484289 77484436 -44359420 - B1_Mus1 SINE Alu 0 148 2 1 1176 1157 214 45 81 chr11 77484436 77484473 -44359383 - ORR1A4 LTR MaLR -304 90 55 1 1176 475 178 0 32 chr11 77484463 77484556 -44359300 + B1_Mur4 SINE Alu 61 150 0 1 1176 699 225 126 6 chr11 77484756 77484939 -44358917 + B3 SINE B2 8 212 -4 1 1176 656 254 40 45 chr11 77484945 77485143 -44358713 + B3A SINE B2 2 198 0 1 1176 334 205 0 88 chr11 77485186 77485202 -44358654 + ID_B1 SINE B4 141 223 -1 1 1176 518 67 13 0 chr11 77485202 77485277 -44358579 + B1_Mus2 SINE Alu 72 147 0 1 1176 460 353 6 25 chr11 77485437 77485594 -44358262 + RSINE1 SINE B4 2 155 -10 1 1176 934 94 192 6 chr11 77485655 77485816 -44358040 + B2_Mm1t SINE B2 1 191 -2 1 1176 1618 48 0 0 chr11 77485818 77486007 -44357849 + B2_Mm1a SINE B2 2 190 -3 1 1176 231 86 0 0 chr11 77486050 77486085 -44357771 - U2 snRNA snRNA -153 35 1 1 1176 327 267 11 43 chr11 77486122 77486216 -44357640 - B3A SINE B2 -105 93 3 1 1176 509 252 9 0 chr11 77486336 77486443 -44357413 + B1_Mur1 SINE Alu 2 109 -40 1 1176 2791 171 38 99 chr11 77486444 77487426 -44356430 + RLTR25B LTR ERVK 1 861 -242 1 1176 1277 115 16 11 chr11 77487512 77487697 -44356159 + B2_Mm2 SINE B2 2 187 -8 1 1176 490 210 12 143 chr11 77487697 77487858 -44355998 - B3 SINE B2 -6 189 50 1 1176 338 244 36 12 chr11 77487855 77487938 -44355918 + RSINE1 SINE B4 42 126 -39 1 1176 1129 76 0 0 chr11 77487996 77488154 -44355702 + B2_Mm2 SINE B2 1 158 -37 1 1176 207 0 0 0 chr11 77488154 77488177 -44355679 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1176 467 217 0 42 chr11 77488219 77488315 -44355541 - PB1D9 SINE Alu -7 113 22 1 1176 1136 54 0 39 chr11 77488352 77488506 -44355350 + B1_Mus1 SINE Alu 1 148 0 1 1176 387 0 0 0 chr11 77488637 77488680 -44355176 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1176 1180 74 0 0 chr11 77489018 77489166 -44354690 - B1_Mus1 SINE Alu 0 148 1 1 1176 189 0 0 0 chr11 77489219 77489240 -44354616 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1176 249 88 0 0 chr11 77489299 77489333 -44354523 - B1_Mur4 SINE Alu -116 34 1 1 1176 2233 59 4 0 chr11 77489347 77489620 -44354236 - L1_Mus1 LINE L1 0 6567 6294 1 1176 1363 81 11 0 chr11 77489637 77489822 -44354034 - B2_Mm1a SINE B2 -6 187 1 1 1176 1094 80 0 7 chr11 77489846 77489985 -44353871 - B1_Mm SINE Alu -9 138 1 1 1176 207 0 0 0 chr11 77490012 77490035 -44353821 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1176 1169 42 0 14 chr11 77490035 77490171 -44353685 - B1_Mus1 SINE Alu -9 139 5 1 1176 323 314 39 0 chr11 77490293 77490395 -44353461 - ID_B1 SINE B4 -37 187 82 1 1176 330 344 50 43 chr11 77490421 77490582 -44353274 + RSINE1 SINE B4 3 164 -1 1 1176 225 0 0 0 chr11 77490602 77490627 -44353229 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1176 1243 28 0 0 chr11 77490952 77491093 -44352763 + B1_Mus1 SINE Alu 1 141 -7 1 1176 198 0 0 0 chr11 77491098 77491120 -44352736 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1176 646 106 284 0 chr11 77491171 77491312 -44352544 + B2_Mm2 SINE B2 1 181 -14 1 1176 480 68 340 28 chr11 77491359 77491465 -44352391 + B2_Mm2 SINE B2 47 185 -10 1 1176 1069 44 0 87 chr11 77491578 77491728 -44352128 + B1_Mm SINE Alu 1 137 -10 1 1176 219 36 0 0 chr11 77491728 77491756 -44352100 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1176 951 103 199 0 chr11 77491761 77491917 -44351939 + B2_Mm2 SINE B2 1 187 -8 1 1176 600 104 0 115 chr11 77491931 77492061 -44351795 - B2_Mm2 SINE B2 0 195 81 1 1176 694 179 58 22 chr11 77492088 77492225 -44351631 - B1_Mus1 SINE Alu -5 143 2 1 1176 913 165 10 52 chr11 77492581 77492773 -44351083 + MTC LTR MaLR 7 190 -231 1 1176 1382 69 15 55 chr11 77492805 77492965 -44350891 + B2_Mm1t SINE B2 1 160 -33 1 1176 315 0 0 0 chr11 77492965 77493000 -44350856 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1176 1382 69 15 55 chr11 77493000 77493014 -44350842 + B2_Mm1t SINE B2 161 168 -25 1 1176 1173 34 7 46 chr11 77493014 77493167 -44350689 + B1_Mm SINE Alu 1 147 0 1 1176 1382 69 15 55 chr11 77493167 77493190 -44350666 + B2_Mm1t SINE B2 169 191 -2 1 1176 594 221 29 0 chr11 77493209 77493345 -44350511 + B1_Mur3 SINE Alu 5 144 -5 1 1176 189 0 0 0 chr11 77493345 77493366 -44350490 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1176 709 130 89 0 chr11 77493406 77493529 -44350327 + B1_Mus2 SINE Alu 9 142 -5 1 1176 192 77 0 0 chr11 77493534 77493560 -44350296 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 1 1176 781 185 128 15 chr11 77493561 77493764 -44350092 + MTC LTR MaLR 194 419 0 1 1176 602 150 406 13 chr11 77494067 77494222 -44349634 + B3 SINE B2 1 216 0 1 1176 771 89 186 8 chr11 77494423 77494547 -44349309 + B1_Mm SINE Alu 1 146 -1 1 1176 345 294 55 0 chr11 77494740 77494849 -44349007 + B1F SINE Alu 1 115 -34 1 1176 330 287 101 0 chr11 77494849 77494869 -44348987 + ID_B1 SINE B4 82 223 -1 1 1176 517 216 54 9 chr11 77494878 77494990 -44348866 + PB1D9 SINE Alu 2 118 -2 1 1176 270 0 0 0 chr11 77495006 77495036 -44348820 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1176 1379 71 21 16 chr11 77495084 77495270 -44348586 - B2_Mm2 SINE B2 -8 187 1 1 1176 1301 116 11 5 chr11 77495408 77495599 -44348257 - B2_Mm2 SINE B2 -2 193 2 1 1176 528 67 0 0 chr11 77495613 77495688 -44348168 - B1_Mur4 SINE Alu -1 149 75 1 1176 256 245 40 50 chr11 77495688 77495709 -44348147 - ID_B1 SINE B4 0 221 127 1 1176 577 212 0 0 chr11 77495725 77495847 -44348009 - B1F1 SINE Alu -9 140 19 1 1176 733 245 48 5 chr11 77495968 77496157 -44347699 + B3 SINE B2 1 197 -19 1 1176 1313 102 0 41 chr11 77496166 77496361 -44347495 - B2_Mm2 SINE B2 -8 187 1 1 1176 28 29 0 0 chr11 77496363 77496398 -44347458 + AT_rich Low_complexity Low_complexity 1 35 0 1 1176 724 111 119 0 chr11 77496432 77496558 -44347298 + B1_Mus1 SINE Alu 8 148 0 1 1176 793 127 0 21 chr11 77496589 77496734 -44347122 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 1 1176 625 105 42 0 chr11 77496734 77496829 -44347027 - B2_Mm2 SINE B2 -95 100 2 1 1176 484 279 70 0 chr11 77496830 77496959 -44346897 + B3 SINE B2 12 149 -67 1 1176 324 0 0 0 chr11 77496961 77496997 -44346859 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1176 340 266 21 11 chr11 77497025 77497120 -44346736 - B1_Mur1 SINE Alu -18 131 36 1 1176 438 261 63 0 chr11 77497292 77497403 -44346453 + ID_B1 SINE B4 91 208 -16 1 1176 245 27 54 0 chr11 77497403 77497440 -44346416 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 1 1176 456 184 14 0 chr11 77497476 77497569 -44346287 + B3A SINE B2 2 96 -120 1 1176 859 61 9 5 chr11 77497591 77497730 -44346126 - B1_Mus2 SINE Alu -1 146 12 1 1176 375 296 0 39 chr11 77497705 77497835 -44346021 + B3 SINE B2 84 208 -8 1 1176 659 259 12 24 chr11 77497845 77498015 -44345841 - B3 SINE B2 -46 170 3 1 1176 315 273 111 0 chr11 77498069 77498168 -44345688 + B1F1 SINE Alu 21 130 -19 1 1176 243 0 0 0 chr11 77498170 77498197 -44345659 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1176 515 90 221 39 chr11 77498264 77498368 -44345488 + B1_Mus1 SINE Alu 5 127 -21 1 1176 463 191 102 16 chr11 77498469 77498597 -44345259 + B1_Mur1 SINE Alu 10 148 -1 1 1176 300 27 0 0 chr11 77499236 77499273 -44344583 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1176 266 218 0 38 chr11 77499762 77499798 -44344058 + (CCA)n Simple_repeat Simple_repeat 3 38 0 1 1176 189 0 0 0 chr11 77499798 77499819 -44344037 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1 1176 266 218 0 38 chr11 77499819 77499887 -44343969 + (CCA)n Simple_repeat Simple_repeat 1 65 0 1 1176 22 0 0 0 chr11 77500147 77500169 -44343687 + GC_rich Low_complexity Low_complexity 1 22 0 1 1176 22 0 0 0 chr11 77500385 77500407 -44343449 + AT_rich Low_complexity Low_complexity 1 22 0 2 1176 39 38 0 0 chr11 77500891 77500944 -44342912 + GC_rich Low_complexity Low_complexity 1 53 0 3 1176 24 0 0 0 chr11 77500958 77500982 -44342874 + GC_rich Low_complexity Low_complexity 1 24 0 4 1176 225 0 0 0 chr11 77501752 77501777 -44342079 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1176 207 0 0 0 chr11 77502634 77502657 -44341199 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1176 1107 65 14 21 chr11 77502663 77502804 -44341052 - B1_Mus2 SINE Alu -7 140 1 7 1176 519 60 0 0 chr11 77502817 77502884 -44340972 + (TA)n Simple_repeat Simple_repeat 1 67 0 8 1176 533 224 26 8 chr11 77503229 77503346 -44340510 + PB1D9 SINE Alu 2 120 0 9 1176 1375 82 16 21 chr11 77503538 77503725 -44340131 - B2_Mm2 SINE B2 -9 186 1 1 1176 737 143 111 15 chr11 77503762 77503897 -44339959 + B1_Mus1 SINE Alu 1 148 0 1 1176 1093 109 0 20 chr11 77504134 77504284 -44339572 - B1_Mus2 SINE Alu 0 147 1 1 1176 367 165 56 56 chr11 77504353 77504443 -44339413 - B2_Mm1a SINE B2 -1 192 103 1 1176 305 342 0 0 chr11 77504631 77504704 -44339152 - PB1D7 SINE Alu -11 109 37 1 1176 351 0 0 0 chr11 77506797 77506836 -44337020 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1176 228 67 0 0 chr11 77507049 77507079 -44336777 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1176 1076 46 53 0 chr11 77507400 77507531 -44336325 - B1_Mm SINE Alu -9 138 1 1 1176 836 130 67 22 chr11 77507866 77508000 -44335856 + B1_Mus1 SINE Alu 5 144 -4 1 1176 357 244 229 57 chr11 77508054 77508176 -44335680 + RSINE1 SINE B4 1 143 -22 1 1176 538 168 143 56 chr11 77508228 77508354 -44335502 - B1_Mm SINE Alu -5 142 6 2 1176 259 311 20 94 chr11 77508399 77508548 -44335308 - RLTR25B LTR ERVK -449 579 442 2 1176 641 231 39 0 chr11 77508447 77508577 -44335279 - B1_Mm SINE Alu -1 146 12 2 1176 1037 84 0 78 chr11 77508702 77508856 -44335000 - B1_Mus1 SINE Alu -6 142 1 2 1176 564 273 114 5 chr11 77508867 77509051 -44334805 - B3 SINE B2 -11 205 2 2 1176 581 289 15 31 chr11 77509074 77509270 -44334586 - B3A SINE B2 -3 195 3 2 1176 1052 65 0 0 chr11 77509366 77509505 -44334351 - B1_Mus2 SINE Alu 0 147 9 2 1176 258 32 0 0 chr11 77509773 77509804 -44334052 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 1176 288 229 250 0 chr11 77509813 77509909 -44333947 + B1_Mur2 SINE Alu 1 120 -29 2 1176 1691 31 0 50 chr11 77510043 77510245 -44333611 + B2_Mm1a SINE B2 2 193 0 2 1176 224 211 0 0 chr11 77510577 77510615 -44333241 + polypyrimidine Low_complexity Low_complexity 3 40 0 3 1176 1158 124 15 51 chr11 77510879 77511074 -44332782 - B2_Mm2 SINE B2 -2 193 6 3 1176 927 57 32 0 chr11 77511550 77511673 -44332183 - B1_Mus1 SINE Alu 0 148 22 3 1176 354 183 77 5 chr11 77511695 77511777 -44332079 + B1_Mur2 SINE Alu 61 149 0 3 1176 465 286 90 75 chr11 77512444 77512629 -44331227 - L1M3 LINE L1 -559 5612 5430 3 1176 739 246 64 35 chr11 77512629 77512831 -44331025 - B3 SINE B2 -7 209 2 3 1176 465 286 90 75 chr11 77512831 77512913 -44330943 - L1M3 LINE L1 -742 5429 5341 3 1176 418 194 196 36 chr11 77512951 77513063 -44330793 - B1_Mur2 SINE Alu -7 142 13 3 1176 271 239 43 29 chr11 77513007 77513076 -44330780 - B4 SINE B4 -141 151 82 3 1176 1362 115 5 25 chr11 77513103 77513299 -44330557 - B2_Mm2 SINE B2 -2 193 2 3 1176 269 374 12 0 chr11 77513661 77513744 -44330112 + RSINE1 SINE B4 55 138 -27 3 1176 257 371 0 19 chr11 77513797 77513904 -44329952 + ID_B1 SINE B4 96 200 -24 4 1176 236 175 13 171 chr11 77513949 77514025 -44329831 + B2_Mm2 SINE B2 70 133 -62 4 1176 1090 66 66 0 chr11 77514042 77514179 -44329677 - B1_Mus2 SINE Alu 0 147 2 4 1176 1108 67 72 12 chr11 77514522 77514541 -44329315 - B2_Mm2 SINE B2 -1 194 176 4 1176 213 65 0 0 chr11 77514541 77514572 -44329284 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1176 1108 67 72 12 chr11 77514572 77514719 -44329137 - B2_Mm2 SINE B2 -20 175 19 4 1176 455 149 167 10 chr11 77515120 77515222 -44328634 - B1_Mur2 SINE Alu 0 149 32 4 1176 647 226 102 7 chr11 77515246 77515393 -44328463 - B3 SINE B2 -26 190 30 4 1176 210 205 0 0 chr11 77515836 77515875 -44327981 + ID_B1 SINE B4 100 138 -86 4 1176 280 223 204 108 chr11 77516055 77516231 -44327625 + L1MC4 LINE L1 6747 6939 -1103 4 1176 514 114 80 0 chr11 77516434 77516522 -44327334 + B1_Mus2 SINE Alu 45 139 -8 4 1176 1118 137 42 47 chr11 77516605 77516796 -44327060 + B2_Mm2 SINE B2 2 191 -4 5 1176 250 50 50 0 chr11 77516807 77516847 -44327009 + Lx2 LINE L1 6954 6995 -2 5 1176 569 231 66 22 chr11 77516976 77517113 -44326743 + B1_Mur4 SINE Alu 8 150 0 5 1176 347 308 53 23 chr11 77517356 77517489 -44326367 + B1F SINE Alu 10 146 -3 5 1176 538 67 191 0 chr11 77517528 77517617 -44326239 + B2_Mm2 SINE B2 5 110 -85 5 1176 852 66 55 47 chr11 77517655 77517782 -44326074 - B1_Mus1 SINE Alu -20 128 1 5 1176 508 107 0 13 chr11 77517782 77517857 -44325999 + B2_Mm2 SINE B2 97 170 -25 5 1176 1088 110 21 0 chr11 77517874 77518019 -44325837 - B1_Mus1 SINE Alu 0 148 1 5 1176 1049 45 8 0 chr11 77518039 77518172 -44325684 - B1_Mus1 SINE Alu -1 147 14 5 1176 435 241 46 93 chr11 77518040 77518191 -44325665 - B4A SINE B4 -68 224 81 5 1176 302 296 74 0 chr11 77518191 77518272 -44325584 + B1F2 SINE Alu 53 139 -10 5 1176 243 304 0 0 chr11 77518356 77518412 -44325444 + B1_Mm SINE Alu 38 93 -54 6 1176 246 400 144 9 chr11 77518667 77518778 -44325078 - RSINE1 SINE B4 -6 159 34 6 1176 22 0 0 0 chr11 77519141 77519163 -44324693 + AT_rich Low_complexity Low_complexity 1 22 0 6 1176 1251 75 0 0 chr11 77519163 77519310 -44324546 - B1_Mus1 SINE Alu 0 148 2 6 1176 428 220 170 0 chr11 77519496 77519596 -44324260 - PB1D9 SINE Alu 0 120 4 6 1176 1338 155 69 35 chr11 77519977 77520265 -44323591 - Lx9 LINE L1 -166 7478 7181 6 1176 1519 185 58 12 chr11 77520265 77520593 -44323263 - Lx9 LINE L1 -615 7029 6687 6 1176 726 52 10 0 chr11 77520622 77520718 -44323138 - B1_Mus2 SINE Alu 0 147 51 6 1176 296 244 0 103 chr11 77520656 77520743 -44323113 - MT2B LTR ERVL -337 264 187 6 1176 1195 68 0 45 chr11 77521015 77521169 -44322687 - B1_Mm SINE Alu 0 147 1 6 1176 443 127 38 0 chr11 77521172 77521251 -44322605 - L1Md_F2 LINE L1 0 6582 6501 6 1176 617 11 211 0 chr11 77521329 77521419 -44322437 - B1_Mus2 SINE Alu 0 147 39 7 1176 327 215 140 0 chr11 77521407 77521500 -44322356 - B1_Mus1 SINE Alu -34 114 9 7 1176 266 338 0 0 chr11 77521606 77521677 -44322179 - ID SINE ID -149 75 5 7 1176 247 265 54 89 chr11 77521698 77521810 -44322046 - B1_Mus2 SINE Alu -1 146 39 7 1176 1450 84 10 16 chr11 77521819 77522013 -44321843 - B2_Mm1a SINE B2 0 193 1 7 1176 1273 49 0 0 chr11 77522374 77522518 -44321338 + B1_Mus1 SINE Alu 5 148 0 7 1176 195 139 0 0 chr11 77522519 77522555 -44321301 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1176 346 221 79 110 chr11 77522720 77522847 -44321009 + ID_B1 SINE B4 86 208 -16 7 1176 224 296 67 100 chr11 77522847 77522870 -44320986 + B1F2 SINE Alu 5 149 0 7 1176 294 73 0 0 chr11 77523361 77523402 -44320454 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1176 231 114 0 0 chr11 77524433 77524468 -44319388 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 8 1176 603 39 0 0 chr11 77524582 77524660 -44319196 + (TG)n Simple_repeat Simple_repeat 2 79 0 8 1176 197 33 0 32 chr11 77525290 77525321 -44318535 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 8 1176 34 42 0 0 chr11 77525458 77525506 -44318350 + AT_rich Low_complexity Low_complexity 1 48 0 8 1176 321 26 0 0 chr11 77525985 77526023 -44317833 + (TA)n Simple_repeat Simple_repeat 1 38 0 8 1176 339 137 0 0 chr11 77527969 77528042 -44315814 + (T)n Simple_repeat Simple_repeat 1 73 0 8 1176 596 128 220 0 chr11 77528064 77528173 -44315683 - B1_Mur3 SINE Alu -15 134 2 8 1176 198 0 0 0 chr11 77528675 77528697 -44315159 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1176 359 235 31 0 chr11 77530929 77531012 -44312844 + PB1D10 SINE Alu 10 97 -23 8 1176 847 159 28 35 chr11 77531633 77531776 -44312080 - B1_Mur2 SINE Alu -5 144 3 8 1176 186 77 75 19 chr11 77531786 77531839 -44312017 + T-rich Low_complexity Low_complexity 3 58 0 9 1176 859 118 0 38 chr11 77531888 77532020 -44311836 - B2_Mm1t SINE B2 -32 161 35 9 1176 1020 130 62 0 chr11 77532550 77532712 -44311144 + B2_Mm2 SINE B2 1 172 -23 9 1176 227 368 103 0 chr11 77533369 77533456 -44310400 - B4 SINE B4 -113 179 84 9 1176 234 0 0 0 chr11 77533763 77533789 -44310067 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 1176 1313 54 0 0 chr11 77533798 77533946 -44309910 - B1_Mus1 SINE Alu 0 148 1 9 1176 824 80 161 0 chr11 77534151 77534288 -44309568 - B2_Mm2 SINE B2 -7 188 30 9 1176 962 42 8 0 chr11 77534873 77534993 -44308863 + B1_Mus1 SINE Alu 23 143 -5 9 1176 207 0 0 0 chr11 77534995 77535018 -44308838 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1176 846 179 20 1 chr11 77535027 77535190 -44308666 - B2_Mm2 SINE B2 -38 178 1 9 1176 1006 73 0 14 chr11 77535309 77535448 -44308408 - B1_Mus1 SINE Alu 0 148 12 1 1176 1002 146 0 0 chr11 77535671 77535815 -44308041 + B1_Mus1 SINE Alu 5 148 0 1 1176 281 270 32 0 chr11 77537813 77537876 -44305980 + PB1D10 SINE Alu 51 115 -2 1 1176 261 236 73 0 chr11 77537880 77537935 -44305921 + B1F1 SINE Alu 84 142 -7 1 1176 401 247 0 27 chr11 77537950 77538025 -44305831 + ID4_ SINE ID 3 75 -8 1 1176 1075 117 7 0 chr11 77538068 77538213 -44305643 + B1_Mus2 SINE Alu 2 147 0 1 1176 203 302 166 0 chr11 77538232 77538346 -44305510 - MIR SINE MIR -26 242 101 1 1176 549 0 0 0 chr11 77539110 77539171 -44304685 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1176 770 197 7 52 chr11 77539172 77539327 -44304529 + B1_Mur2 SINE Alu 1 148 -1 1 1176 1264 111 35 0 chr11 77539348 77539520 -44304336 - B2_Mm1t SINE B2 -14 179 2 1 1176 192 97 0 0 chr11 77539523 77539554 -44304302 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1 1176 1241 68 0 0 chr11 77539554 77539701 -44304155 - B1_Mus1 SINE Alu 0 148 2 1 1176 684 107 0 0 chr11 77539903 77540006 -44303850 + (TG)n Simple_repeat Simple_repeat 2 104 0 1 1176 475 206 110 30 chr11 77540006 77540106 -44303750 - RSINE1 SINE B4 -56 109 2 1 1176 1350 77 82 0 chr11 77540173 77540368 -44303488 + L1_Mus3 LINE L1 6424 6634 -4 1 1176 1226 82 0 0 chr11 77540377 77540524 -44303332 + B1_Mus2 SINE Alu 1 147 0 1 1176 710 139 164 0 chr11 77540739 77540861 -44302995 + B1_Mus1 SINE Alu 1 142 -6 1 1176 291 284 27 0 chr11 77541378 77541452 -44302404 - ID4 SINE ID 0 83 8 1 1176 1273 41 0 33 chr11 77541670 77541809 -44302047 + B1_Mus2 SINE Alu 1 139 -8 1 1176 207 0 0 0 chr11 77541809 77541832 -44302024 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1176 1273 41 0 33 chr11 77541832 77541844 -44302012 + B1_Mus2 SINE Alu 140 147 0 1 1176 367 293 118 30 chr11 77541883 77542052 -44301804 - MIRb SINE MIR -78 190 7 1 1176 277 290 50 0 chr11 77542951 77543051 -44300805 + MER53 DNA hAT 1 105 -88 1 1176 324 288 357 0 chr11 77543073 77543210 -44300646 - B3A SINE B2 -11 187 2 1 1176 514 244 48 102 chr11 77543229 77543242 -44300614 - B2_Mm2 SINE B2 -1 194 182 1 1176 1191 89 7 0 chr11 77543242 77543388 -44300468 - B1_Mus1 SINE Alu 0 148 2 1 1176 828 244 48 102 chr11 77543388 77543561 -44300295 - B3A SINE B2 -14 181 18 1 1176 426 189 0 72 chr11 77543736 77543833 -44300023 + B1F SINE Alu 13 102 -47 1 1176 1559 69 16 0 chr11 77543848 77544036 -44299820 - B2_Mm2 SINE B2 -3 192 2 1 1176 241 268 33 99 chr11 77544147 77544162 -44299694 - B1F SINE Alu -13 136 52 1 1176 359 194 0 53 chr11 77544162 77544238 -44299618 - ID_B1 SINE B4 -20 204 133 1 1176 4010 161 114 33 chr11 77544221 77545066 -44298790 + RMER19B LTR ERVK 10 890 -12 1 1176 3692 20 2 2 chr11 77545741 77546137 -44297719 + MTA_Mm LTR MaLR 1 396 0 1 1176 423 38 0 0 chr11 77546274 77546327 -44297529 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1176 261 0 0 0 chr11 77546378 77546407 -44297449 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1176 1108 101 0 0 chr11 77546407 77546546 -44297310 - B1_Mus2 SINE Alu -8 139 1 1 1176 436 253 0 0 chr11 77546632 77546707 -44297149 - B4A SINE B4 -217 75 1 1 1176 4000 165 128 28 chr11 77546733 77547593 -44296263 + RMER19B LTR ERVK 1 879 -23 1 1176 466 292 0 0 chr11 77547963 77548069 -44295787 - PB1D7 SINE Alu -5 115 10 1 1176 461 240 29 9 chr11 77548598 77548703 -44295153 - PB1D10 SINE Alu -6 111 5 1 1176 28 0 0 0 chr11 77548716 77548744 -44295112 + AT_rich Low_complexity Low_complexity 1 28 0 1 1176 1748 27 0 0 chr11 77548744 77548932 -44294924 - B2_Mm1a SINE B2 -5 188 1 1 1176 308 374 117 19 chr11 77548963 77549279 -44294577 - L1ME3A LINE L1 -27 6146 5800 1 1176 1078 176 78 0 chr11 77549317 77549521 -44294335 - URR1A DNA MER1_type -5 221 2 1 1176 1305 73 90 6 chr11 77549793 77549971 -44293885 - B2_Mm2 SINE B2 -1 194 2 1 1176 1184 130 43 5 chr11 77549980 77550165 -44293691 - B2_Mm2 SINE B2 0 195 4 1 1176 615 95 9 19 chr11 77550166 77550273 -44293583 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1 1176 853 148 6 123 chr11 77550275 77550437 -44293419 - B1_Mur4 SINE Alu -6 144 2 1 1176 327 261 182 0 chr11 77550478 77550566 -44293290 + PB1D10 SINE Alu 2 105 -12 1 1176 201 39 0 0 chr11 77550759 77550785 -44293071 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 1 1176 888 10 0 0 chr11 77551403 77551504 -44292352 + (TC)n Simple_repeat Simple_repeat 2 102 0 1 1176 695 229 43 0 chr11 77551539 77551671 -44292185 + B1_Mur4 SINE Alu 1 138 -12 1 1176 192 77 0 0 chr11 77551671 77551697 -44292159 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1176 1518 70 0 11 chr11 77551763 77551952 -44291904 + B2_Mm2 SINE B2 2 188 -7 1 1176 388 253 0 0 chr11 77552027 77552102 -44291754 - PB1D9 SINE Alu -12 108 34 1 1176 378 267 305 7 chr11 77552137 77552288 -44291568 + B3A SINE B2 2 197 -1 1 1176 251 256 56 144 chr11 77552384 77552439 -44291417 + MT2B2 LTR ERVL 113 153 -431 1 1176 544 221 6 24 chr11 77552439 77552591 -44291265 + B1_Mur2 SINE Alu 2 145 -4 1 1176 219 36 0 0 chr11 77552597 77552625 -44291231 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1176 21 0 0 0 chr11 77552757 77552778 -44291078 + AT_rich Low_complexity Low_complexity 1 21 0 1 1176 692 250 80 0 chr11 77552801 77552975 -44290881 + B3 SINE B2 2 189 -27 1 1176 817 144 35 35 chr11 77552975 77553015 -44290841 + B1_Mus1 SINE Alu 4 46 -102 1 1176 267 31 0 0 chr11 77553015 77553047 -44290809 + (G)n Simple_repeat Simple_repeat 1 32 0 1 1176 817 144 35 35 chr11 77553047 77553092 -44290764 + B1_Mus1 SINE Alu 47 91 -57 1 1176 2431 176 68 16 chr11 77553092 77553593 -44290263 + RLTR11A2 LTR ERVK 1 527 0 1 1176 817 144 35 35 chr11 77553593 77553650 -44290206 + B1_Mus1 SINE Alu 92 147 -1 1 1176 239 122 20 0 chr11 77553654 77553703 -44290153 + (CAAAAA)n Simple_repeat Simple_repeat 1 50 0 1 1176 708 163 0 0 chr11 77553706 77553835 -44290021 + (TA)n Simple_repeat Simple_repeat 1 129 0 1 1176 595 230 75 24 chr11 77554986 77555160 -44288696 + B3 SINE B2 12 204 -12 1 1176 1000 209 43 19 chr11 77555169 77555379 -44288477 - B3 SINE B2 0 216 2 1 1176 819 108 90 0 chr11 77555430 77555565 -44288291 - B1_Mur4 SINE Alu 0 150 3 1 1176 443 256 111 60 chr11 77555607 77555823 -44288033 + B4 SINE B4 2 228 -64 1 1176 465 19 0 0 chr11 77556100 77556154 -44287702 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1176 1148 123 0 29 chr11 77556158 77556333 -44287523 - B2_Mm2 SINE B2 -25 170 1 1 1176 605 310 154 18 chr11 77556333 77556601 -44287255 + MLT1H1 LTR MaLR 174 478 -77 1 1176 450 294 22 0 chr11 77556631 77556767 -44287089 - MLT1J LTR MaLR -364 148 10 1 1176 270 0 0 0 chr11 77556767 77556797 -44287059 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1176 279 0 0 0 chr11 77556797 77556827 -44287029 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1176 461 217 27 54 chr11 77556829 77557073 -44286783 + (TG)n Simple_repeat Simple_repeat 1 237 0 1 1176 995 64 17 34 chr11 77557089 77557267 -44286589 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1176 199 331 27 93 chr11 77557712 77557793 -44286063 + MIRb SINE MIR 89 172 -96 1 1176 1068 231 4 26 chr11 77557793 77558020 -44285836 + ID_B1 SINE B4 3 224 0 1 1176 199 331 27 93 chr11 77558020 77558121 -44285735 + MIRb SINE MIR 173 259 -9 1 1176 291 161 0 0 chr11 77558138 77558194 -44285662 + (TGG)n Simple_repeat Simple_repeat 1 56 0 1 1176 509 247 10 0 chr11 77558238 77558335 -44285521 + PB1D10 SINE Alu 13 110 -7 1 1176 746 247 10 35 chr11 77558393 77558594 -44285262 + B3A SINE B2 2 197 -1 1 1176 351 0 0 0 chr11 77558660 77558699 -44285157 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1176 878 9 17 35 chr11 77558699 77558808 -44285048 - B1_Mus1 SINE Alu -6 142 35 1 1176 736 142 112 0 chr11 77558816 77558950 -44284906 - B1_Mur2 SINE Alu 0 149 1 1 1176 424 305 52 52 chr11 77559025 77559236 -44284620 - B3A SINE B2 0 216 6 1 1176 783 107 141 0 chr11 77559390 77559511 -44284345 + B2_Mm2 SINE B2 2 139 -56 1 1176 754 222 134 5 chr11 77560122 77560308 -44283548 - B3 SINE B2 -6 210 1 1 1176 180 0 0 0 chr11 77560606 77560626 -44283230 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1176 1276 34 0 0 chr11 77560626 77560773 -44283083 - B1_Mus2 SINE Alu 0 147 1 1 1176 312 27 0 0 chr11 77560936 77560973 -44282883 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1 1176 1189 97 30 0 chr11 77560977 77561142 -44282714 - B2_Mm1t SINE B2 -22 171 2 1 1176 198 0 0 0 chr11 77561593 77561615 -44282241 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1176 248 245 0 0 chr11 77562048 77562097 -44281759 + PB1 SINE Alu 77 125 -2 1 1176 1001 246 0 0 chr11 77562119 77562298 -44281558 + B3A SINE B2 4 182 -16 1 1176 210 136 0 43 chr11 77562319 77562333 -44281523 + A-rich Low_complexity Low_complexity 1 14 0 1 1176 683 176 0 128 chr11 77562333 77562489 -44281367 - B1_Mur1 SINE Alu -10 139 4 1 1176 210 136 0 43 chr11 77562489 77562520 -44281336 + A-rich Low_complexity Low_complexity 15 44 0 1 1176 222 246 77 0 chr11 77562523 77562588 -44281268 + ID2 SINE ID 3 72 -11 1 1176 274 314 83 25 chr11 77562606 77562727 -44281129 + MER20 DNA MER1_type 35 162 -57 1 1176 1096 168 101 10 chr11 77563039 77563237 -44280619 - B3 SINE B2 0 216 1 1 1176 552 351 26 0 chr11 77563281 77563435 -44280421 - B3A SINE B2 -28 170 13 1 1176 540 301 7 7 chr11 77563517 77563664 -44280192 + RSINE1 SINE B4 3 149 -16 2 1176 745 182 7 22 chr11 77563742 77563877 -44279979 - B1_Mur2 SINE Alu 0 149 17 2 1176 320 182 35 105 chr11 77563807 77563893 -44279963 - MT2B LTR ERVL -360 241 162 2 1176 894 179 6 19 chr11 77563945 77564104 -44279752 - B3 SINE B2 0 216 60 2 1176 309 173 0 61 chr11 77564099 77564175 -44279681 + MTE2b LTR MaLR 120 182 -197 2 1176 621 157 84 0 chr11 77564175 77564295 -44279561 + B1_Mur4 SINE Alu 1 150 0 2 1176 1169 119 11 6 chr11 77564295 77564472 -44279384 + B2_Mm1t SINE B2 2 179 -14 2 1176 364 115 160 49 chr11 77564519 77564636 -44279220 + B2_Mm2 SINE B2 47 191 -2 2 1176 517 204 16 237 chr11 77564654 77564723 -44279133 + MTE2b LTR MaLR 168 237 -142 2 1176 1133 80 0 0 chr11 77564723 77564861 -44278995 + B1_Mus2 SINE Alu 1 138 -9 2 1176 517 204 16 237 chr11 77564861 77564977 -44278879 + MTE2b LTR MaLR 238 312 -67 2 1176 864 29 0 0 chr11 77564977 77565080 -44278776 + (TTCC)n Simple_repeat Simple_repeat 1 103 0 2 1176 351 312 62 23 chr11 77565118 77565295 -44278561 + MIR SINE MIR 77 260 -2 2 1176 531 217 22 104 chr11 77566025 77566159 -44277697 + RSINE1 SINE B4 4 126 -39 2 1176 977 101 65 0 chr11 77566438 77566577 -44277279 - B1_Mus1 SINE Alu 0 148 1 2 1176 515 185 21 11 chr11 77567250 77567343 -44276513 - PB1D10 SINE Alu -2 115 22 2 1176 436 219 73 37 chr11 77567387 77567496 -44276360 - B1F SINE Alu -12 137 25 2 1176 389 318 68 59 chr11 77567508 77567745 -44276111 - RMER2 LTR ERV1 0 567 329 2 1176 741 304 77 111 chr11 77568669 77568950 -44274906 + MT2B LTR ERVL 1 288 -313 2 1176 1105 74 105 0 chr11 77568950 77569112 -44274744 - B2_Mm1t SINE B2 -14 179 1 2 1176 741 304 77 111 chr11 77569112 77569297 -44274559 + MT2B LTR ERVL 289 454 -147 2 1176 4103 80 25 11 chr11 77569297 77569856 -44274000 - RMER2 LTR ERV1 0 567 1 2 1176 741 256 26 100 chr11 77569856 77569970 -44273886 + MT2B LTR ERVL 374 539 -62 2 1176 1261 57 97 6 chr11 77569970 77569997 -44273859 - B2_Mm1a SINE B2 -1 192 161 2 1176 279 0 0 0 chr11 77569997 77570028 -44273828 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1176 1261 57 97 6 chr11 77570028 77570175 -44273681 - B2_Mm1a SINE B2 -33 160 2 2 1176 506 256 26 100 chr11 77570175 77570225 -44273631 + MT2A LTR ERVL 482 531 -2 2 1176 2532 140 34 26 chr11 77570547 77570852 -44273004 - MTC LTR MaLR 0 421 107 2 1176 1531 52 10 5 chr11 77570852 77571044 -44272812 + B2_Mm1t SINE B2 1 193 0 2 1176 2532 140 34 26 chr11 77571044 77571156 -44272700 - MTC LTR MaLR -315 106 2 2 1176 871 277 28 55 chr11 77571288 77571489 -44272367 + B4A SINE B4 4 210 -82 2 1176 1206 44 0 0 chr11 77571489 77571626 -44272230 + B1_Mus1 SINE Alu 2 138 -10 2 1176 276 53 0 0 chr11 77571626 77571664 -44272192 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1176 871 277 28 55 chr11 77571664 77571751 -44272105 + B4A SINE B4 211 284 -8 2 1176 618 214 23 31 chr11 77572313 77572443 -44271413 + ID_B1 SINE B4 93 221 -3 2 1176 574 275 77 22 chr11 77572446 77572628 -44271228 + B3A SINE B2 2 193 -5 2 1176 972 105 14 0 chr11 77572647 77572790 -44271066 + B1_Mur4 SINE Alu 6 150 0 2 1176 565 277 7 0 chr11 77572982 77573123 -44270733 - B1_Mur1 SINE Alu -7 142 1 2 1176 373 259 7 62 chr11 77573156 77573258 -44270598 - B1F1 SINE Alu -22 105 1 2 1176 319 315 17 92 chr11 77573258 77573292 -44270564 - ID SINE ID -152 72 48 2 1176 1240 154 65 0 chr11 77573293 77573494 -44270362 + B3 SINE B2 1 214 -2 2 1176 392 240 39 29 chr11 77573544 77573647 -44270209 - PB1 SINE Alu -3 124 21 2 1176 362 253 0 12 chr11 77573716 77573800 -44270056 - MIR SINE MIR -76 186 104 2 1176 505 273 76 50 chr11 77573798 77574010 -44269846 - MIR SINE MIR 0 262 34 2 1176 415 344 56 25 chr11 77574050 77574247 -44269609 + MIRb SINE MIR 45 247 -21 2 1176 292 191 0 0 chr11 77574350 77574397 -44269459 + B1F SINE Alu 5 51 -98 2 1176 904 136 0 12 chr11 77574425 77574589 -44269267 + (GAAA)n Simple_repeat Simple_repeat 2 163 0 2 1176 752 251 12 23 chr11 77574600 77574682 -44269174 + ID SINE ID 3 82 -142 2 1176 359 273 98 2 chr11 77574682 77574797 -44269059 + PB1D10 SINE Alu 1 122 -25 2 1176 765 183 15 0 chr11 77574884 77575005 -44268851 + B1_Mur1 SINE Alu 1 133 -16 2 1176 999 55 20 7 chr11 77575015 77575162 -44268694 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 2 1176 1707 131 63 17 chr11 77575162 77575438 -44268418 - MTC LTR MaLR -127 294 2 2 1176 1561 217 108 62 chr11 77575455 77575977 -44267879 - L1MC1 LINE L1 -207 6126 5578 2 1176 1065 81 15 0 chr11 77575977 77576113 -44267743 + B1_Mus1 SINE Alu 1 138 -10 2 1176 207 0 0 0 chr11 77576113 77576136 -44267720 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1176 1561 217 108 62 chr11 77576136 77576178 -44267678 - L1MC1 LINE L1 -756 5577 5536 2 1176 29 28 0 0 chr11 77576760 77576796 -44267060 + GC_rich Low_complexity Low_complexity 1 36 0 2 1176 225 0 0 0 chr11 77578695 77578720 -44265136 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 2 1176 243 0 0 0 chr11 77579677 77579704 -44264152 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1176 244 297 40 13 chr11 77579723 77579798 -44264058 - MIRc SINE MIR -148 120 44 2 1176 195 259 17 17 chr11 77579845 77579904 -44263952 - MIR SINE MIR -68 140 82 2 1176 21 0 0 0 chr11 77580276 77580297 -44263559 + GC_rich Low_complexity Low_complexity 1 21 0 2 1176 673 236 27 20 chr11 77581064 77581211 -44262645 + RSINE1 SINE B4 14 161 -4 2 1176 189 171 0 0 chr11 77581237 77581272 -44262584 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2 1176 21 0 0 0 chr11 77581338 77581359 -44262497 + AT_rich Low_complexity Low_complexity 1 21 0 2 1176 872 236 81 15 chr11 77581406 77581604 -44262252 + B3 SINE B2 2 212 -4 2 1176 1177 68 0 0 chr11 77581649 77581795 -44262061 + B1_Mus1 SINE Alu 1 146 -2 2 1176 207 0 0 0 chr11 77581795 77581818 -44262038 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1176 309 265 29 14 chr11 77581879 77581948 -44261908 - ID4_ SINE ID -13 70 1 2 1176 336 83 0 0 chr11 77581949 77581997 -44261859 + (TCC)n Simple_repeat Simple_repeat 1 48 0 2 1176 1233 48 0 14 chr11 77581997 77582145 -44261711 - B1_Mus1 SINE Alu -1 147 2 2 1176 675 242 76 81 chr11 77582309 77582507 -44261349 + B3A SINE B2 2 198 0 2 1176 369 280 50 10 chr11 77582589 77582690 -44261166 + U6 snRNA snRNA 3 107 0 2 1176 599 238 8 53 chr11 77582736 77582869 -44260987 + RSINE1 SINE B4 2 128 -37 2 1176 213 65 0 0 chr11 77583023 77583054 -44260802 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1176 396 204 0 157 chr11 77583251 77583385 -44260471 + MT2B LTR ERVL 152 264 -337 2 1176 870 153 14 14 chr11 77583282 77583421 -44260435 + B1_Mur3 SINE Alu 10 148 -1 2 1176 210 116 23 23 chr11 77583422 77583466 -44260390 + A-rich Low_complexity Low_complexity 5 48 0 2 1176 293 252 26 97 chr11 77583542 77583656 -44260200 + ID_B1 SINE B4 118 223 -1 2 1176 221 309 34 90 chr11 77583851 77583940 -44259916 - RSINE1 SINE B4 -79 86 3 2 1176 249 259 67 68 chr11 77584040 77584187 -44259669 - MIR SINE MIR -93 175 25 2 1176 258 233 17 0 chr11 77584239 77584299 -44259557 - L1ME2z LINE L1 -4 6440 6380 2 1176 225 94 0 0 chr11 77584352 77584384 -44259472 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1176 1055 149 12 6 chr11 77584418 77584587 -44259269 - B2_Mm2 SINE B2 -25 170 1 2 1176 383 108 4 4 chr11 77584760 77584839 -44259017 - B1_Mur2 SINE Alu 0 149 42 2 1176 315 170 0 0 chr11 77584859 77584912 -44258944 - L1ME2z LINE L1 -453 5991 5939 2 1176 564 181 165 0 chr11 77584925 77585052 -44258804 + ID_B1 SINE B4 77 224 0 2 1176 402 21 0 0 chr11 77585056 77585103 -44258753 + (GAA)n Simple_repeat Simple_repeat 2 48 0 2 1176 183 42 0 0 chr11 77585176 77585200 -44258656 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1176 1176 34 0 52 chr11 77585200 77585343 -44258513 - B1_Mus2 SINE Alu -9 138 2 2 1176 242 285 161 8 chr11 77586065 77586203 -44257653 - MIR3 SINE MIR -14 194 20 2 1176 599 255 34 89 chr11 77586791 77586886 -44256970 + ID_B1 SINE B4 1 224 0 2 1176 920 128 0 7 chr11 77586886 77587028 -44256828 + B1_Mus2 SINE Alu 7 147 0 2 1176 459 0 0 0 chr11 77587039 77587090 -44256766 + (TGG)n Simple_repeat Simple_repeat 2 52 0 2 1176 580 228 257 20 chr11 77587096 77587244 -44256612 + B4 SINE B4 109 291 -1 2 1176 813 172 264 0 chr11 77587349 77587512 -44256344 - B3 SINE B2 -10 206 1 2 1176 1826 167 135 16 chr11 77587545 77587916 -44255940 - MTD LTR MaLR 0 419 5 2 1176 647 220 44 29 chr11 77588023 77588159 -44255697 - B1_Mur3 SINE Alu -10 139 2 2 1176 645 233 19 64 chr11 77588192 77588348 -44255508 + B1F2 SINE Alu 1 149 0 2 1176 34 24 0 0 chr11 77588416 77588457 -44255399 + AT_rich Low_complexity Low_complexity 1 41 0 2 1176 1493 65 5 0 chr11 77588508 77588694 -44255162 - B2_Mm1a SINE B2 -5 188 2 2 1176 325 276 65 28 chr11 77588719 77588827 -44255029 - PB1D10 SINE Alu -1 116 5 2 1176 429 104 0 0 chr11 77588838 77588915 -44254941 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 2 1176 1265 41 0 0 chr11 77588916 77589062 -44254794 - B1_Mus1 SINE Alu -1 147 2 2 1176 722 231 6 24 chr11 77589085 77589249 -44254607 - B3 SINE B2 0 216 56 2 1176 1158 58 0 0 chr11 77590014 77590153 -44253703 + B1_Mus1 SINE Alu 1 139 -9 2 1176 333 0 0 0 chr11 77590153 77590190 -44253666 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1176 432 202 38 0 chr11 77590214 77590293 -44253563 + B3 SINE B2 1 82 -134 2 1176 195 184 0 0 chr11 77590861 77590899 -44252957 + GA-rich Low_complexity Low_complexity 1 38 0 2 1176 315 0 0 0 chr11 77592215 77592250 -44251606 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1176 252 0 0 0 chr11 77592250 77592277 -44251579 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1176 430 271 40 63 chr11 77593254 77593380 -44250476 + RSINE1 SINE B4 3 125 -40 3 1176 396 0 0 0 chr11 77593389 77593433 -44250423 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1176 878 271 9 5 chr11 77593461 77593676 -44250180 + B3 SINE B2 1 216 0 3 1176 720 241 14 7 chr11 77593705 77593851 -44250005 + B1_Mur2 SINE Alu 2 148 -1 3 1176 216 122 0 0 chr11 77593860 77593901 -44249955 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1177 1125 81 81 0 chr11 77596420 77596580 -44247276 - B2_Mm1a SINE B2 -19 174 2 3 1177 225 0 0 0 chr11 77597014 77597039 -44246817 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1177 211 335 55 65 chr11 77598378 77598602 -44245254 + L2b LINE L2 3055 3275 -112 3 1177 341 38 0 71 chr11 77600468 77600482 -44243374 + (GAAAA)n Simple_repeat Simple_repeat 2 13 0 3 1177 1277 48 0 0 chr11 77600482 77600629 -44243227 + B1_Mm SINE Alu 1 147 0 3 1177 341 38 0 71 chr11 77600629 77600670 -44243186 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 3 1177 671 262 52 151 chr11 77600673 77600885 -44242971 + B4A SINE B4 1 211 -81 3 1177 1015 219 24 5 chr11 77600885 77601096 -44242760 + B3 SINE B2 2 216 0 3 1177 671 262 52 151 chr11 77601096 77601207 -44242649 + B4A SINE B4 212 292 0 3 1177 774 241 23 29 chr11 77601648 77601845 -44242011 + B3 SINE B2 8 207 -9 3 1177 370 247 65 107 chr11 77601971 77602139 -44241717 - YREP_Mm Unknown Unknown -1471 341 181 3 1177 759 194 7 29 chr11 77602004 77602142 -44241714 + ID_B1 SINE B4 88 222 -2 3 1177 421 255 54 179 chr11 77602175 77602220 -44241636 + B3A SINE B2 3 39 -159 3 1177 1009 62 108 0 chr11 77602220 77602350 -44241506 + B1_Mus1 SINE Alu 2 145 -3 3 1177 186 43 0 0 chr11 77602350 77602373 -44241483 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1177 421 255 54 179 chr11 77602373 77602387 -44241469 + B3A SINE B2 40 40 -158 3 1177 1226 96 56 6 chr11 77602387 77602565 -44241291 + B2_Mm2 SINE B2 1 187 -8 3 1177 421 255 54 179 chr11 77602565 77602727 -44241129 + B3A SINE B2 40 197 -1 3 1177 1658 42 0 0 chr11 77602825 77603018 -44240838 - B2_Mm1a SINE B2 0 193 1 3 1177 517 275 50 7 chr11 77603245 77603384 -44240472 + MIR SINE MIR 80 224 -38 3 1177 518 237 131 7 chr11 77603428 77603581 -44240275 - Tigger7 DNA MER2_type -52 2439 2268 3 1177 636 226 8 0 chr11 77603597 77603721 -44240135 + ID_B1 SINE B4 100 224 0 3 1177 440 286 18 0 chr11 77603756 77603868 -44239988 - Tigger7 DNA MER2_type -2377 114 1 3 1177 385 254 154 149 chr11 77605119 77605327 -44238529 + MER3 DNA MER1_type 1 209 0 3 1177 220 311 85 28 chr11 77605886 77605992 -44237864 - L3b LINE CR1 -185 297 186 3 1177 805 183 29 24 chr11 77607430 77607620 -44236236 - B3 SINE B2 -4 191 2 3 1177 488 262 98 14 chr11 77607652 77607795 -44236061 - RSINE1 SINE B4 0 165 11 3 1177 198 0 0 0 chr11 77607811 77607833 -44236023 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1177 689 179 104 7 chr11 77607840 77607975 -44235881 - B1_Mur1 SINE Alu -1 148 1 3 1177 425 19 19 0 chr11 77607979 77608033 -44235823 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1177 201 171 0 0 chr11 77608034 77608069 -44235787 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1177 1681 31 0 0 chr11 77608205 77608396 -44235460 + B2_Mm1a SINE B2 2 192 -1 3 1177 321 214 44 67 chr11 77608396 77608486 -44235370 + PB1D7 SINE Alu 32 119 -1 3 1177 21 0 0 0 chr11 77608522 77608543 -44235313 + AT_rich Low_complexity Low_complexity 1 21 0 3 1177 371 203 0 0 chr11 77609301 77609370 -44234486 - ID4_ SINE ID -6 77 9 3 1177 918 281 133 81 chr11 77610039 77610716 -44233140 - Tigger7 DNA MER2_type -106 599 2 3 1177 944 157 47 0 chr11 77610775 77610948 -44232908 - B3 SINE B2 -6 192 1 3 1177 346 238 48 0 chr11 77610951 77611035 -44232821 - B4A SINE B4 -199 93 6 3 1177 469 235 78 0 chr11 77611076 77611178 -44232678 - B1_Mur2 SINE Alu 0 149 40 3 1177 315 177 0 0 chr11 77611179 77611241 -44232615 + CT-rich Low_complexity Low_complexity 4 65 0 3 1177 855 129 19 15 chr11 77611254 77611400 -44232456 - B2_Mm1t SINE B2 -37 161 1 3 1177 953 169 0 0 chr11 77611404 77611552 -44232304 - B1_Mus1 SINE Alu 0 148 1 3 1177 207 0 0 0 chr11 77611559 77611582 -44232274 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 1177 679 104 0 36 chr11 77611634 77611773 -44232083 + (TC)n Simple_repeat Simple_repeat 1 134 0 3 1177 672 213 8 0 chr11 77611989 77612111 -44231745 - B1_Mur2 SINE Alu -26 123 1 3 1177 267 122 0 0 chr11 77612111 77612152 -44231704 - B2_Mm2 SINE B2 -154 41 1 3 1177 550 223 119 12 chr11 77612155 77612323 -44231533 - MER5A DNA MER1_type 0 189 4 3 1177 338 303 32 16 chr11 77612494 77612522 -44231334 + ID SINE ID 51 80 -144 3 1177 412 221 10 21 chr11 77612522 77612619 -44231237 + PB1D10 SINE Alu 1 96 -21 3 1177 216 0 0 0 chr11 77612620 77612644 -44231212 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1177 1002 48 81 0 chr11 77612660 77612784 -44231072 - B1_Mus1 SINE Alu -12 136 3 3 1177 447 297 6 61 chr11 77612813 77612831 -44231025 + ID_B1 SINE B4 69 224 0 3 1177 600 274 7 7 chr11 77612831 77612978 -44230878 + B1F SINE Alu 3 149 0 3 1177 866 214 183 21 chr11 77612981 77613167 -44230689 + B3 SINE B2 1 216 0 3 1177 284 274 18 105 chr11 77613173 77613287 -44230569 + MER5B DNA MER1_type 32 135 -43 3 1177 831 192 0 7 chr11 77613523 77613670 -44230186 + B1_Mus1 SINE Alu 3 148 0 3 1177 252 0 0 0 chr11 77615529 77615557 -44228299 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1177 677 260 14 7 chr11 77615564 77615711 -44228145 - RSINE1 SINE B4 -15 150 3 3 1177 621 324 28 23 chr11 77616593 77616811 -44227045 + MIRb SINE MIR 34 252 -16 3 1177 439 190 13 0 chr11 77616822 77616901 -44226955 + ID4 SINE ID 3 82 -1 3 1177 965 138 12 0 chr11 77617277 77617444 -44226412 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 3 1177 375 105 0 0 chr11 77617444 77617501 -44226355 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1177 824 218 90 15 chr11 77617501 77617701 -44226155 - B3 SINE B2 0 216 2 3 1177 1065 43 0 14 chr11 77618659 77618801 -44225055 + B1_Mus1 SINE Alu 7 146 -2 3 1177 183 319 43 0 chr11 77619179 77619248 -44224608 + MIRb SINE MIR 3 74 -194 3 1177 412 272 10 0 chr11 77619248 77619343 -44224513 + ID_B1 SINE B4 116 211 -13 3 1177 180 0 0 0 chr11 77619343 77619363 -44224493 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1177 620 241 49 7 chr11 77619506 77619648 -44224208 + B1F2 SINE Alu 1 148 -1 3 1177 667 291 38 29 chr11 77619671 77619880 -44223976 + B4A SINE B4 12 222 -70 3 1177 404 219 69 17 chr11 77619891 77620007 -44223849 + RSINE1 SINE B4 3 124 -41 3 1177 384 59 0 0 chr11 77620008 77620059 -44223797 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1177 413 198 12 0 chr11 77620690 77620771 -44223085 + ID4 SINE ID 2 83 0 3 1177 288 286 105 42 chr11 77621065 77621160 -44222696 - MIR3 SINE MIR -27 181 81 3 1177 1211 54 0 0 chr11 77626679 77626826 -44217030 + B1_Mus2 SINE Alu 1 147 0 3 1177 207 0 0 0 chr11 77626826 77626849 -44217007 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1177 198 312 59 59 chr11 77627064 77627166 -44216690 + MIRb SINE MIR 157 258 -10 3 1177 228 163 0 0 chr11 77628285 77628328 -44215528 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1177 598 153 90 0 chr11 77629853 77629964 -44213892 - B1_Mm SINE Alu -1 146 26 3 1177 1201 55 7 0 chr11 77632878 77633024 -44210832 + B1_Mm SINE Alu 1 147 0 3 1177 254 314 38 91 chr11 77633033 77633059 -44210797 - B2_Mm2 SINE B2 -14 181 7 3 1177 733 258 19 25 chr11 77633059 77633218 -44210638 - RSINE1 SINE B4 0 165 8 3 1177 590 49 12 0 chr11 77635810 77635892 -44207964 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1177 186 43 0 0 chr11 77637082 77637105 -44206751 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1177 507 296 61 25 chr11 77640028 77640191 -44203665 + B4A SINE B4 120 288 -4 3 1177 233 204 0 0 chr11 77640215 77640259 -44203597 + GA-rich Low_complexity Low_complexity 1 44 0 3 1177 683 186 0 8 chr11 77640514 77640633 -44203223 + PB1D9 SINE Alu 1 118 -2 3 1177 323 320 0 0 chr11 77641692 77641770 -44202086 + ID_B1 SINE B4 93 170 -54 3 1177 512 218 195 32 chr11 77641781 77641966 -44201890 - B3 SINE B2 0 216 2 3 1177 875 193 7 0 chr11 77642017 77642162 -44201694 + B1_Mur4 SINE Alu 5 150 0 3 1177 387 0 0 0 chr11 77642570 77642613 -44201243 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1177 366 23 0 0 chr11 77643569 77643612 -44200244 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1177 380 281 128 24 chr11 77643867 77644053 -44199803 - MIRb SINE MIR -18 250 43 3 1177 254 303 79 58 chr11 77644580 77644769 -44199087 + MIR3 SINE MIR 5 197 -11 3 1177 297 0 0 0 chr11 77645458 77645491 -44198365 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1177 468 123 0 0 chr11 77645615 77645688 -44198168 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1177 186 43 0 0 chr11 77646775 77646798 -44197058 + (C)n Simple_repeat Simple_repeat 1 23 0 3 1177 1386 94 5 0 chr11 77646974 77647165 -44196691 - B2_Mm1a SINE B2 0 193 2 3 1177 800 159 7 36 chr11 77647207 77647344 -44196512 + B1_Mus1 SINE Alu 1 133 -15 4 1177 723 134 94 0 chr11 77647344 77647471 -44196385 - RLTR26 LTR ERVK -3 639 501 4 1177 1077 160 0 97 chr11 77647485 77647713 -44196143 - RLTR26 LTR ERVK -436 206 1 4 1177 294 143 0 0 chr11 77647724 77647773 -44196083 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1177 864 158 0 0 chr11 77648594 77648733 -44195123 - B3 SINE B2 -76 140 2 4 1177 986 125 51 56 chr11 77648748 77648926 -44194930 - B2_Mm2 SINE B2 -14 181 5 4 1177 515 223 19 0 chr11 77648974 77649077 -44194779 - B1_Mur2 SINE Alu -12 137 33 4 1177 277 347 138 33 chr11 77649077 77649411 -44194445 + L2 LINE L2 2172 2540 -879 4 1177 384 230 0 0 chr11 77650946 77651107 -44192749 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 1177 566 189 0 27 chr11 77651148 77651333 -44192523 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1177 352 298 60 17 chr11 77652127 77652243 -44191613 - RSINE1 SINE B4 -43 122 2 4 1177 597 342 45 37 chr11 77652243 77652473 -44191383 - B4A SINE B4 -60 232 1 4 1177 809 246 6 11 chr11 77652958 77653139 -44190717 - B3A SINE B2 -16 182 3 4 1177 588 248 124 0 chr11 77653201 77653346 -44190510 - RSINE1 SINE B4 0 165 3 4 1177 324 0 0 0 chr11 77653479 77653515 -44190341 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1177 320 284 239 0 chr11 77656227 77656336 -44187520 + ID_B1 SINE B4 81 215 -9 4 1177 1246 48 0 0 chr11 77658243 77658390 -44185466 + B1_Mus2 SINE Alu 1 147 0 4 1177 203 167 0 0 chr11 77659568 77659610 -44184246 + (CAGAGA)n Simple_repeat Simple_repeat 4 45 0 4 1177 190 135 0 55 chr11 77661219 77661274 -44182582 + GA-rich Low_complexity Low_complexity 2 53 0 4 1177 1043 97 23 0 chr11 77663060 77663236 -44180620 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1177 325 164 14 14 chr11 77663237 77663264 -44180592 + polypyrimidine Low_complexity Low_complexity 49 76 0 4 1177 1114 107 11 0 chr11 77663264 77663441 -44180415 + (TCC)n Simple_repeat Simple_repeat 2 180 0 4 1177 325 164 14 14 chr11 77663441 77663487 -44180369 + polypyrimidine Low_complexity Low_complexity 3 48 0 4 1177 329 151 135 162 chr11 77663487 77663598 -44180258 - B1_Mur1 SINE Alu 0 149 42 4 1177 208 350 7 35 chr11 77664761 77664903 -44178953 + CT-rich Low_complexity Low_complexity 1 138 0 4 1177 794 285 61 20 chr11 77666026 77666273 -44177583 + B4 SINE B4 8 264 -28 4 1177 186 43 0 0 chr11 77666291 77666314 -44177542 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1177 1278 101 11 0 chr11 77666317 77666496 -44177360 - B2_Mm2 SINE B2 -13 182 2 4 1177 252 184 0 0 chr11 77667914 77667963 -44175893 + (CAGGG)n Simple_repeat Simple_repeat 1 49 0 4 1177 369 0 0 0 chr11 77670650 77670691 -44173165 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1177 221 365 70 6 chr11 77670695 77670771 -44173085 - B2_Mm2 SINE B2 -26 169 3 4 1177 371 272 0 0 chr11 77670771 77670852 -44173004 - RSINE1 SINE B4 -81 84 4 4 1177 452 18 18 0 chr11 77672383 77672440 -44171416 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1177 282 116 0 0 chr11 77673495 77673538 -44170318 + (CCCCAG)n Simple_repeat Simple_repeat 4 46 0 4 1177 594 264 44 0 chr11 77676321 77676503 -44167353 + Tigger14a DNA MER2_type 75 264 -60 4 1177 1094 117 39 0 chr11 77676802 77676981 -44166875 - URR1A DNA MER1_type -1 225 40 4 1177 747 67 373 0 chr11 77677091 77677225 -44166631 - B2_Mm2 SINE B2 -11 184 1 4 1177 258 32 0 0 chr11 77679957 77679988 -44163868 + (TCC)n Simple_repeat Simple_repeat 2 32 0 4 1177 388 255 31 0 chr11 77680184 77680282 -44163574 - PB1D7 SINE Alu -17 103 3 4 1177 205 322 136 24 chr11 77681669 77681882 -44161974 - L3b LINE CR1 -191 291 55 4 1177 816 123 0 30 chr11 77682426 77682560 -44161296 - B1_Mur4 SINE Alu -15 135 6 4 1177 374 0 22 0 chr11 77682649 77682695 -44161161 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1177 342 0 0 0 chr11 77682695 77682732 -44161124 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1177 580 140 100 0 chr11 77682732 77682832 -44161024 - B1_Mur2 SINE Alu -13 136 27 4 1177 256 191 111 0 chr11 77684419 77684482 -44159374 + ID4 SINE ID 1 70 -13 4 1177 236 370 83 13 chr11 77684535 77684553 -44159303 + B4 SINE B4 76 145 -147 4 1177 589 233 17 0 chr11 77684553 77684669 -44159187 + B1_Mur1 SINE Alu 11 128 -21 4 1177 236 370 83 13 chr11 77684669 77684691 -44159165 + B4 SINE B4 146 242 -50 4 1177 234 143 0 0 chr11 77684864 77684913 -44158943 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1177 255 170 0 0 chr11 77685378 77685425 -44158431 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1177 294 29 0 0 chr11 77685421 77685456 -44158400 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1177 300 238 100 0 chr11 77685456 77685536 -44158320 + L1MC4a LINE L1 6603 6690 -1192 4 1177 1066 127 12 0 chr11 77686584 77686750 -44157106 + URR1A DNA MER1_type 59 226 0 4 1177 233 146 21 0 chr11 77686773 77686821 -44157035 + GA-rich Low_complexity Low_complexity 3 51 0 4 1177 414 288 50 72 chr11 77687189 77687369 -44156487 - L1MC5 LINE L1 -216 7745 7570 4 1177 348 240 40 40 chr11 77687397 77687497 -44156359 + PB1D10 SINE Alu 18 117 0 4 1177 461 193 203 20 chr11 77687504 77687657 -44156199 + B4 SINE B4 1 181 -111 4 1177 1197 34 0 0 chr11 77687773 77687920 -44155936 + B1_Mm SINE Alu 1 147 0 4 1177 23 0 0 0 chr11 77688054 77688077 -44155779 + AT_rich Low_complexity Low_complexity 1 23 0 4 1177 381 227 11 11 chr11 77688103 77688192 -44155664 - MER5B DNA MER1_type -79 99 11 4 1177 592 277 46 51 chr11 77690758 77690975 -44152881 - ID_B1 SINE B4 -2 222 7 4 1177 229 326 93 14 chr11 77691013 77691153 -44152703 + L2a LINE L2 3117 3267 -159 4 1177 1592 264 83 24 chr11 77691350 77691894 -44151962 - L1MB2 LINE L1 -7 6164 5589 4 1177 1875 191 66 18 chr11 77691898 77692138 -44151718 + MTD LTR MaLR 1 250 -169 4 1177 279 54 0 0 chr11 77692138 77692175 -44151681 + (CAG)n Simple_repeat Simple_repeat 1 37 0 4 1177 1875 191 66 18 chr11 77692175 77692329 -44151527 + MTD LTR MaLR 251 414 -5 4 1177 881 240 69 138 chr11 77692387 77692793 -44151063 - MTE2a LTR MaLR 0 379 2 4 1177 1143 55 0 7 chr11 77692793 77692941 -44150915 + B1_Mus2 SINE Alu 1 147 0 4 1177 234 0 0 0 chr11 77692941 77692967 -44150889 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1177 189 197 222 14 chr11 77693054 77693126 -44150730 - MIRc SINE MIR -69 199 113 4 1177 997 136 217 0 chr11 77693450 77693634 -44150222 + URR1A DNA MER1_type 3 226 0 4 1177 392 301 115 0 chr11 77696448 77696604 -44147252 - MIRb SINE MIR -76 192 19 4 1177 1135 37 0 0 chr11 77696888 77697023 -44146833 + B1_Mm SINE Alu 1 135 -12 4 1177 279 0 0 0 chr11 77697028 77697059 -44146797 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1177 658 262 36 57 chr11 77697909 77698103 -44145753 - B3A SINE B2 0 198 9 4 1177 236 30 30 0 chr11 77698110 77698143 -44145713 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 4 1177 187 337 54 0 chr11 77698214 77698306 -44145550 + MIR SINE MIR 43 139 -69 4 1177 180 77 0 0 chr11 77699604 77699630 -44144226 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 4 1177 318 298 18 0 chr11 77701048 77701162 -44142694 + AmnSINE1 SINE SINE 1 116 -459 4 1177 251 292 70 40 chr11 77701936 77702036 -44141820 + MER58B DNA MER1_type 26 128 -213 4 1177 1099 62 0 20 chr11 77702049 77702197 -44141659 - B1_Mus2 SINE Alu -2 145 1 4 1177 315 167 68 27 chr11 77702344 77702418 -44141438 + ID_B1 SINE B4 78 154 -70 4 1177 529 194 14 72 chr11 77702353 77702492 -44141364 + B1_Mus1 SINE Alu 11 141 -7 4 1177 810 261 35 0 chr11 77702497 77702696 -44141160 + B3 SINE B2 1 206 -10 4 1177 727 235 70 15 chr11 77702711 77702910 -44140946 + B3 SINE B2 7 216 0 4 1177 811 218 100 64 chr11 77702910 77703160 -44140696 + MER58B DNA MER1_type 83 341 0 4 1177 204 40 0 0 chr11 77703299 77703324 -44140532 + (GGAGAA)n Simple_repeat Simple_repeat 3 27 0 4 1177 895 160 11 0 chr11 77703338 77703513 -44140343 + GA-rich Low_complexity Low_complexity 2 178 0 4 1177 207 0 0 0 chr11 77703558 77703581 -44140275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1177 1285 92 27 0 chr11 77703599 77703784 -44140072 + B2_Mm2 SINE B2 2 191 -4 4 1177 482 198 9 54 chr11 77703944 77704056 -44139800 - ID_B1 SINE B4 -84 140 34 4 1177 284 191 111 0 chr11 77704158 77704221 -44139635 - MIR SINE MIR -33 229 160 4 1177 1052 226 9 5 chr11 77704869 77705082 -44138774 + B3 SINE B2 1 214 -2 4 1177 1104 41 21 0 chr11 77705122 77705267 -44138589 + B1_Mus1 SINE Alu 1 148 0 4 1177 362 278 0 42 chr11 77705948 77706068 -44137788 - PB1D10 SINE Alu 0 117 3 4 1177 258 200 15 15 chr11 77708051 77708117 -44135739 - Arthur1A DNA Tip100 -2 175 110 4 1177 360 300 9 9 chr11 77708124 77708235 -44135621 + BC1_Mm scRNA scRNA 1 111 -41 4 1177 381 313 9 0 chr11 77708217 77708332 -44135524 - Arthur1A DNA Tip100 -59 118 3 4 1177 277 238 179 8 chr11 77708462 77708585 -44135271 + MLT1H1 LTR MaLR 101 244 -347 4 1177 321 271 177 29 chr11 77708606 77708781 -44135075 + MLT1H1 LTR MaLR 331 531 -24 4 1177 217 253 62 25 chr11 77708821 77708902 -44134954 - MIRb SINE MIR -160 108 25 4 1177 724 265 42 28 chr11 77708919 77709136 -44134720 - ID_B1 SINE B4 -3 221 2 4 1177 468 51 0 0 chr11 77711854 77711913 -44131943 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1177 548 258 48 0 chr11 77712444 77712568 -44131288 + B1F SINE Alu 7 136 -13 4 1177 881 141 0 7 chr11 77712585 77712728 -44131128 - B1_Mus1 SINE Alu -1 147 6 4 1177 582 168 0 0 chr11 77712840 77712935 -44130921 + B1_Mur3 SINE Alu 49 143 -6 4 1177 264 182 217 66 chr11 77712935 77712946 -44130910 + MT2B LTR ERVL 206 327 -274 4 1177 911 239 5 37 chr11 77713130 77713347 -44130509 - B3 SINE B2 -5 211 2 5 1177 271 325 0 13 chr11 77713786 77713864 -44129992 - ID4_ SINE ID 0 83 7 5 1177 414 194 156 9 chr11 77713877 77713986 -44129870 - ID_B1 SINE B4 -3 221 97 5 1177 201 39 0 0 chr11 77714107 77714133 -44129723 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1177 862 154 0 0 chr11 77714134 77714270 -44129586 - B1_Mus1 SINE Alu -12 136 1 5 1177 528 275 94 0 chr11 77715750 77715899 -44127957 + RSINE1 SINE B4 2 164 -1 5 1177 396 0 0 0 chr11 77715963 77716007 -44127849 + (TTTTC)n Simple_repeat Simple_repeat 1 44 0 5 1177 954 143 0 0 chr11 77716010 77716171 -44127685 + (TC)n Simple_repeat Simple_repeat 2 162 0 5 1177 555 269 32 79 chr11 77716353 77716543 -44127313 - B3A SINE B2 0 198 18 5 1177 288 259 52 69 chr11 77716593 77716709 -44127147 - PB1D10 SINE Alu -3 114 1 5 1177 465 175 0 88 chr11 77716733 77716846 -44127010 + B1_Mur1 SINE Alu 47 149 0 5 1177 959 126 0 7 chr11 77717862 77718006 -44125850 - B1_Mus2 SINE Alu 0 147 5 5 1177 552 193 8 8 chr11 77718535 77718655 -44125201 - PB1D9 SINE Alu 0 120 1 5 1177 557 173 128 80 chr11 77718766 77718954 -44124902 + B3A SINE B2 1 197 -1 5 1177 1167 41 7 0 chr11 77719263 77719409 -44124447 + B1_Mus1 SINE Alu 2 148 0 5 1177 213 39 0 0 chr11 77719938 77719964 -44123892 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1177 342 0 0 0 chr11 77720187 77720225 -44123631 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1177 414 0 0 0 chr11 77720225 77720270 -44123586 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1177 257 60 57 57 chr11 77720888 77720976 -44122880 + (TTGGGG)n Simple_repeat Simple_repeat 6 93 0 5 1177 419 231 42 25 chr11 77721275 77721395 -44122461 + ID_B1 SINE B4 102 223 -1 5 1177 439 270 0 57 chr11 77721684 77721806 -44122050 + PB1 SINE Alu 11 125 -2 5 1177 787 191 7 20 chr11 77721809 77721959 -44121897 + B1_Mur3 SINE Alu 1 148 -1 5 1177 911 196 102 54 chr11 77722277 77722482 -44121374 + B3 SINE B2 2 216 0 5 1177 1407 87 5 0 chr11 77722498 77722682 -44121174 - B2_Mm1a SINE B2 -7 186 2 5 1177 1214 42 7 0 chr11 77722694 77722838 -44121018 - B1_Mm SINE Alu 0 147 3 5 1177 352 250 0 0 chr11 77724105 77724173 -44119683 + ID2 SINE ID 5 72 -11 5 1177 656 174 66 0 chr11 77724190 77724311 -44119545 + B3 SINE B2 1 129 -87 5 1177 180 0 0 0 chr11 77724314 77724334 -44119522 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 5 1177 289 381 30 7 chr11 77724598 77724616 -44119240 - B4A SINE B4 -68 224 134 5 1177 474 300 0 0 chr11 77724616 77724726 -44119130 - PB1D7 SINE Alu -2 118 9 5 1177 518 136 0 0 chr11 77724757 77724838 -44119018 - PB1D9 SINE Alu -1 119 39 5 1177 370 288 73 55 chr11 77724819 77724875 -44118981 + B4 SINE B4 31 89 -203 5 1177 750 208 0 32 chr11 77724875 77725029 -44118827 + B1_Mur1 SINE Alu 1 149 0 5 1177 256 320 8 47 chr11 77725330 77725458 -44118398 + L1ME4a LINE L1 5949 6071 -53 5 1177 24 0 0 0 chr11 77725620 77725644 -44118212 + AT_rich Low_complexity Low_complexity 1 24 0 5 1178 189 294 105 12 chr11 77726138 77726224 -44117632 + MIRc SINE MIR 115 208 -60 5 1178 259 143 61 0 chr11 77726417 77726466 -44117390 - PB1D9 SINE Alu -17 103 52 5 1178 385 250 55 9 chr11 77726538 77726647 -44117209 - PB1D10 SINE Alu -1 116 3 5 1178 425 287 122 15 chr11 77727163 77727368 -44116488 - MER102a DNA MER1_type -4 326 100 5 1178 453 261 49 83 chr11 77727517 77727722 -44116134 - ID_B1 SINE B4 0 224 27 5 1178 307 303 0 48 chr11 77728656 77728760 -44115096 + L1MC4a LINE L1 5803 5901 -1981 5 1178 240 263 0 0 chr11 77729224 77729281 -44114575 + GA-rich Low_complexity Low_complexity 5 61 0 5 1178 386 212 0 23 chr11 77729798 77729885 -44113971 + B1F SINE Alu 65 149 0 5 1178 457 280 136 48 chr11 77729902 77730153 -44113703 + B4A SINE B4 1 273 -19 5 1178 275 282 130 77 chr11 77730318 77730487 -44113369 + ID_B1 SINE B4 47 224 0 5 1178 431 147 16 148 chr11 77730360 77730488 -44113368 + PB1D9 SINE Alu 10 120 0 5 1178 344 176 0 139 chr11 77730498 77730584 -44113272 + ID2 SINE ID 9 82 -1 5 1178 224 91 23 0 chr11 77731681 77731725 -44112131 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 5 1178 912 98 105 0 chr11 77731725 77731858 -44111998 - B1_Mus1 SINE Alu 0 148 2 5 1178 903 91 235 72 chr11 77731899 77731934 -44111922 + B2_Mm2 SINE B2 3 39 -156 5 1178 1696 36 0 0 chr11 77731934 77732127 -44111729 + B2_Mm1a SINE B2 1 193 0 5 1178 903 91 235 72 chr11 77732127 77732257 -44111599 + B2_Mm2 SINE B2 40 195 0 5 1178 504 219 20 0 chr11 77732257 77732343 -44111513 + polypurine Low_complexity Low_complexity 3 88 0 5 1178 2276 0 0 0 chr11 77732343 77732590 -44111266 + L1Md_T LINE L1 6336 6582 0 5 1178 504 219 20 0 chr11 77732590 77732654 -44111202 + polypurine Low_complexity Low_complexity 89 155 0 5 1178 439 302 136 0 chr11 77732654 77732823 -44111033 - B4A SINE B4 -77 215 24 5 1178 576 266 135 5 chr11 77734127 77734312 -44109544 + ID_B1 SINE B4 8 216 -8 5 1178 374 218 173 0 chr11 77734322 77734432 -44109424 + B1F2 SINE Alu 21 149 0 5 1178 789 160 99 0 chr11 77734484 77734615 -44109241 + B1_Mus1 SINE Alu 2 145 -3 5 1178 333 0 0 0 chr11 77734623 77734660 -44109196 + (CTG)n Simple_repeat Simple_repeat 3 39 0 5 1178 210 296 40 40 chr11 77734673 77734747 -44109109 + MIRc SINE MIR 53 126 -142 5 1178 664 264 61 0 chr11 77734761 77734909 -44108947 + RSINE1 SINE B4 3 159 -6 5 1178 480 254 16 56 chr11 77734960 77735085 -44108771 + PB1D7 SINE Alu 1 120 0 5 1178 268 346 0 0 chr11 77735093 77735174 -44108682 + ID4 SINE ID 1 81 -2 5 1178 191 296 20 39 chr11 77735198 77735300 -44108556 + MIR SINE MIR 136 235 -27 5 1178 298 285 32 10 chr11 77735752 77735872 -44107984 - MIRb SINE MIR -97 171 48 5 1178 999 107 14 35 chr11 77735946 77736091 -44107765 + B1_Mus1 SINE Alu 2 143 -5 5 1178 273 29 0 0 chr11 77736093 77736127 -44107729 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 1178 1015 183 6 16 chr11 77736127 77736310 -44107546 + B3 SINE B2 30 210 -6 5 1178 706 141 8 47 chr11 77736362 77736489 -44107367 + B1_Mur4 SINE Alu 2 123 -27 5 1178 351 0 0 0 chr11 77736744 77736783 -44107073 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1178 401 253 136 58 chr11 77737975 77738130 -44105726 + MIRc SINE MIR 99 268 0 5 1178 1036 208 33 19 chr11 77738642 77738853 -44105003 - ID_B1 SINE B4 -9 215 2 5 1178 1260 122 32 0 chr11 77740960 77741117 -44102739 + B2_Mm2 SINE B2 1 157 -38 5 1178 414 0 0 0 chr11 77741117 77741163 -44102693 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 5 1178 1260 122 32 0 chr11 77741163 77741193 -44102663 + B2_Mm2 SINE B2 158 193 -2 5 1178 360 0 0 0 chr11 77741951 77741991 -44101865 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1178 461 236 62 18 chr11 77741999 77742111 -44101745 - RSINE1 SINE B4 -45 120 4 5 1178 279 268 34 43 chr11 77743515 77743632 -44100224 + BC1_Mm scRNA scRNA 2 117 -35 5 1178 21 36 0 0 chr11 77744356 77744384 -44099472 + GC_rich Low_complexity Low_complexity 1 28 0 5 1178 23 0 0 0 chr11 77744437 77744460 -44099396 + GC_rich Low_complexity Low_complexity 1 23 0 5 1178 21 36 0 0 chr11 77744523 77744551 -44099305 + GC_rich Low_complexity Low_complexity 1 28 0 5 1178 214 171 0 0 chr11 77745324 77745359 -44098497 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1178 480 198 14 106 chr11 77748750 77748891 -44094965 + MamRep1879 DNA hAT? 5 132 -84 5 1178 315 293 143 26 chr11 77749634 77749788 -44094068 - MIRb SINE MIR -62 206 35 5 1178 256 339 66 0 chr11 77749888 77750026 -44093830 - MIR SINE MIR 0 268 121 5 1178 311 55 53 40 chr11 77750953 77751028 -44092828 + (TTTTG)n Simple_repeat Simple_repeat 3 78 0 5 1178 216 0 0 0 chr11 77751870 77751894 -44091962 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 5 1178 190 313 15 0 chr11 77751897 77751964 -44091892 + MIRb SINE MIR 59 126 -142 5 1178 236 310 14 0 chr11 77754065 77754136 -44089720 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1178 624 206 0 0 chr11 77754146 77754282 -44089574 + (TA)n Simple_repeat Simple_repeat 2 137 0 5 1178 383 119 0 15 chr11 77756349 77756417 -44087439 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1178 718 128 23 6 chr11 77756466 77756594 -44087262 + (CA)n Simple_repeat Simple_repeat 1 130 0 5 1178 246 32 0 0 chr11 77756594 77756625 -44087231 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1178 718 128 23 6 chr11 77756625 77756659 -44087197 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1178 282 29 0 0 chr11 77756659 77756694 -44087162 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1178 718 184 28 7 chr11 77756694 77756822 -44087034 + (CA)n Simple_repeat Simple_repeat 1 130 0 5 1178 192 40 0 0 chr11 77756822 77756847 -44087009 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1178 262 189 29 7 chr11 77756847 77756871 -44086985 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1178 279 0 0 0 chr11 77756873 77756904 -44086952 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1178 396 0 0 0 chr11 77756904 77756947 -44086909 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1178 1144 218 0 14 chr11 77757488 77757707 -44086149 + B3 SINE B2 1 216 0 5 1178 261 301 21 0 chr11 77757998 77758091 -44085765 - MER3 DNA MER1_type -56 153 59 5 1178 320 264 14 0 chr11 77758099 77758171 -44085685 - ID4 SINE ID -4 79 7 5 1178 643 278 76 57 chr11 77758216 77758426 -44085430 + B3 SINE B2 1 214 -2 6 1178 180 293 67 0 chr11 77758532 77758607 -44085249 + MIR SINE MIR 102 181 -81 6 1178 731 152 8 0 chr11 77759218 77759343 -44084513 - B1_Mur3 SINE Alu -1 148 23 6 1178 235 287 177 16 chr11 77760076 77760220 -44083636 + MIR SINE MIR 18 180 -82 6 1178 298 249 0 16 chr11 77760311 77760414 -44083442 + MIR SINE MIR 75 173 -95 6 1178 821 150 17 6 chr11 77762131 77762161 -44081695 + polypyrimidine Low_complexity Low_complexity 149 178 0 6 1178 630 140 103 52 chr11 77762161 77762297 -44081559 - B1_Mur4 SINE Alu -5 145 3 6 1178 821 150 17 6 chr11 77762297 77762440 -44081416 + CT-rich Low_complexity Low_complexity 4 148 0 6 1178 718 89 0 18 chr11 77762471 77762585 -44081271 + (TTC)n Simple_repeat Simple_repeat 2 113 0 6 1178 620 159 46 31 chr11 77762586 77762716 -44081140 - B1_Mur2 SINE Alu 0 149 18 6 1178 182 333 37 37 chr11 77763053 77763134 -44080722 + L3 LINE CR1 3815 3895 -594 6 1178 305 267 226 9 chr11 77763288 77763394 -44080462 + ID_B1 SINE B4 94 222 -2 6 1178 293 269 0 15 chr11 77763435 77763503 -44080353 + PB1D10 SINE Alu 31 97 -20 6 1178 423 0 0 0 chr11 77763504 77763551 -44080305 + (TAA)n Simple_repeat Simple_repeat 1 47 0 6 1178 202 135 0 26 chr11 77764033 77764071 -44079785 + CT-rich Low_complexity Low_complexity 1 37 0 6 1178 228 282 37 37 chr11 77764910 77764991 -44078865 + L3 LINE CR1 3815 3895 -594 6 1178 340 350 58 0 chr11 77765019 77765156 -44078700 + MER117 DNA MER1_type 2 146 -51 6 1178 333 264 83 28 chr11 77765235 77765344 -44078512 + PB1D10 SINE Alu 2 116 -1 6 1178 198 310 17 0 chr11 77765385 77765443 -44078413 - MIRm SINE MIR -115 161 103 6 1178 625 190 0 0 chr11 77765546 77765662 -44078194 + B1_Mur2 SINE Alu 31 146 -3 6 1178 276 277 244 0 chr11 77765969 77766088 -44077768 - B1_Mur2 SINE Alu -1 148 1 6 1178 1135 97 6 6 chr11 77766092 77766269 -44077587 + (TTC)n Simple_repeat Simple_repeat 2 178 0 6 1178 504 276 30 132 chr11 77766271 77766505 -44077351 - ID_B1 SINE B4 -12 212 3 6 1178 420 294 16 0 chr11 77766596 77766722 -44077134 + MER117 DNA MER1_type 54 181 -16 6 1178 201 229 0 0 chr11 77767520 77767555 -44076301 + (CCA)n Simple_repeat Simple_repeat 3 37 0 6 1178 228 325 178 19 chr11 77767696 77767822 -44076034 + MIRb SINE MIR 25 164 -104 6 1178 1189 175 25 0 chr11 77767822 77768013 -44075843 + B3 SINE B2 1 196 -20 6 1178 333 0 0 0 chr11 77768013 77768050 -44075806 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1178 228 325 178 19 chr11 77768058 77768088 -44075768 + MIRb SINE MIR 165 205 -63 6 1178 318 276 0 0 chr11 77770801 77770896 -44072960 - MIRc SINE MIR -39 169 75 6 1178 250 254 68 0 chr11 77770922 77770981 -44072875 - L2b LINE L2 -10 3365 3303 6 1178 200 333 97 18 chr11 77772239 77772352 -44071504 + MIRc SINE MIR 22 143 -125 6 1178 233 231 46 0 chr11 77773404 77773469 -44070387 + MIR SINE MIR 63 130 -132 6 1178 220 336 143 8 chr11 77773823 77773949 -44069907 - L3 LINE CR1 -2 4487 4345 6 1178 185 284 25 86 chr11 77774433 77774514 -44069342 - L2 LINE L2 -526 2893 2818 6 1178 495 0 0 0 chr11 77774825 77774880 -44068976 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1178 239 0 32 0 chr11 77774880 77774910 -44068946 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1178 369 216 211 88 chr11 77774944 77775091 -44068765 - ID_B1 SINE B4 -58 166 2 6 1178 253 324 0 0 chr11 77775092 77775166 -44068690 - MER5A1 DNA MER1_type -92 74 1 6 1178 594 234 27 0 chr11 77775170 77775281 -44068575 + PB1D10 SINE Alu 2 115 -2 6 1178 26 30 0 0 chr11 77776894 77776927 -44066929 + AT_rich Low_complexity Low_complexity 1 33 0 6 1178 304 204 247 0 chr11 77776957 77777050 -44066806 - RSINE1 SINE B4 -47 118 3 6 1178 1129 75 14 0 chr11 77777085 77777231 -44066625 - B1_Mus1 SINE Alu 0 148 1 6 1178 204 40 0 0 chr11 77777332 77777357 -44066499 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 6 1178 592 194 0 0 chr11 77777377 77777485 -44066371 + B1_Mur1 SINE Alu 42 149 0 6 1178 776 53 7 43 chr11 77777519 77777658 -44066198 + BC1_Mm scRNA scRNA 1 134 -18 6 1178 588 81 0 0 chr11 77777878 77777965 -44065891 + (CA)n Simple_repeat Simple_repeat 1 87 0 6 1178 436 246 45 18 chr11 77777973 77778085 -44065771 - RSINE1 SINE B4 -48 117 3 6 1178 348 278 11 0 chr11 77778088 77778186 -44065670 - B1F SINE Alu -21 99 1 6 1178 271 352 66 58 chr11 77779804 77780045 -44063811 + MIRc SINE MIR 26 268 0 6 1178 424 303 59 29 chr11 77780102 77780306 -44063550 - MIR SINE MIR -40 222 13 6 1178 1040 44 0 0 chr11 77780492 77780628 -44063228 + L1Md_A LINE L1 6447 6582 0 6 1178 1197 77 112 0 chr11 77780947 77781117 -44062739 + B2_Mm2 SINE B2 2 190 -5 6 1178 1661 186 104 43 chr11 77781135 77781579 -44062277 + Lx9 LINE L1 7174 7644 0 6 1178 348 286 10 20 chr11 77781867 77781967 -44061889 - PB1D10 SINE Alu 0 117 19 6 1178 292 305 14 58 chr11 77781965 77781992 -44061864 + ID_B1 SINE B4 64 196 -28 6 1178 526 156 36 27 chr11 77781992 77782104 -44061752 + B1_Mus1 SINE Alu 5 117 -31 6 1178 256 48 48 0 chr11 77782330 77782372 -44061484 + (CCCCCT)n Simple_repeat Simple_repeat 5 48 0 6 1178 688 200 36 0 chr11 77783186 77783326 -44060530 + B3A SINE B2 4 148 -50 6 1178 1265 113 17 0 chr11 77783413 77783590 -44060266 - B2_Mm2 SINE B2 -14 181 2 6 1178 266 287 31 21 chr11 77783670 77783766 -44060090 + ID_B1 SINE B4 77 173 -51 6 1178 403 232 32 0 chr11 77783682 77783777 -44060079 + PB1D10 SINE Alu 6 103 -14 6 1178 192 203 152 0 chr11 77785274 77785333 -44058523 - L2c LINE L2 -69 3318 3251 6 1178 387 257 73 0 chr11 77785416 77785525 -44058331 + PB1D10 SINE Alu 1 117 0 6 1178 765 176 41 34 chr11 77785526 77785673 -44058183 + B1_Mur2 SINE Alu 2 149 0 6 1178 318 167 0 0 chr11 77785674 77785734 -44058122 + A-rich Low_complexity Low_complexity 1 60 0 6 1178 416 264 128 0 chr11 77785738 77785866 -44057990 + ID_B1 SINE B4 82 221 -3 6 1178 216 261 0 0 chr11 77785883 77785948 -44057908 + GA-rich Low_complexity Low_complexity 1 65 0 6 1178 217 239 283 0 chr11 77788885 77788977 -44054879 + MIRm SINE MIR 34 151 -125 6 1178 349 257 53 44 chr11 77789104 77789218 -44054638 + PB1D7 SINE Alu 1 115 -5 6 1178 674 270 84 18 chr11 77789218 77789384 -44054472 + B3A SINE B2 1 177 -21 6 1178 378 57 0 0 chr11 77789385 77789438 -44054418 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1178 231 215 215 0 chr11 77789520 77789585 -44054271 + ID4_ SINE ID 5 83 0 6 1178 334 241 51 0 chr11 77789731 77789810 -44054046 - ID_B1 SINE B4 -37 187 105 6 1178 797 154 80 49 chr11 77793090 77793130 -44050726 + Lx9 LINE L1 7413 7449 -195 6 1178 1196 68 0 0 chr11 77793130 77793276 -44050580 + B1_Mus2 SINE Alu 1 146 -1 6 1178 797 154 80 49 chr11 77793276 77793460 -44050396 + Lx9 LINE L1 7450 7644 0 6 1178 22 35 0 0 chr11 77793460 77793489 -44050367 + AT_rich Low_complexity Low_complexity 1 29 0 6 1178 681 146 18 26 chr11 77793496 77793609 -44050247 + PB1D9 SINE Alu 9 120 0 6 1178 495 60 0 0 chr11 77794497 77794564 -44049292 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 1178 207 346 178 0 chr11 77794722 77794829 -44049027 + MIR3 SINE MIR 60 185 -23 6 1178 514 227 103 29 chr11 77794880 77795016 -44048840 + B1_Mur2 SINE Alu 3 148 -1 6 1178 207 0 0 0 chr11 77795881 77795904 -44047952 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1178 243 0 0 0 chr11 77797977 77798004 -44045852 + (CGG)n Simple_repeat Simple_repeat 1 27 0 6 1178 24 0 0 0 chr11 77798041 77798065 -44045791 + GC_rich Low_complexity Low_complexity 1 24 0 6 1178 234 0 0 0 chr11 77799230 77799256 -44044600 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1178 275 224 0 79 chr11 77799386 77799449 -44044407 - B1F SINE Alu -57 92 35 6 1178 509 257 36 14 chr11 77799554 77799692 -44044164 - B1F1 SINE Alu -7 142 2 6 1178 357 24 0 0 chr11 77799707 77799749 -44044107 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1178 292 312 69 73 chr11 77799909 77800158 -44043698 + B4A SINE B4 27 275 -17 6 1178 514 197 100 62 chr11 77800256 77800386 -44043470 - RSINE1 SINE B4 -19 146 12 6 1178 999 78 169 0 chr11 77800536 77800702 -44043154 - B2_Mm2 SINE B2 -1 194 1 6 1178 1185 49 0 0 chr11 77801268 77801410 -44042446 + B1_Mus1 SINE Alu 1 142 -6 6 1178 345 24 0 0 chr11 77801412 77801454 -44042402 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 6 1178 317 24 24 0 chr11 77801558 77801600 -44042256 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1178 1217 68 0 0 chr11 77801667 77801814 -44042042 + B1_Mus2 SINE Alu 1 147 0 6 1178 248 291 0 18 chr11 77801895 77801951 -44041905 - B1F SINE Alu -92 57 3 6 1178 804 196 105 5 chr11 77802342 77802532 -44041324 + B3 SINE B2 2 210 -6 6 1178 830 169 0 0 chr11 77802547 77802683 -44041173 - B1_Mus1 SINE Alu 0 148 13 6 1178 673 289 91 23 chr11 77803609 77803874 -44039982 + B4A SINE B4 10 292 0 6 1178 276 280 18 14 chr11 77803861 77803954 -44039902 + PB1D9 SINE Alu 15 112 -8 6 1178 1360 60 60 0 chr11 77803986 77804169 -44039687 + B2_Mm2 SINE B2 2 195 0 6 1178 382 316 35 0 chr11 77804191 77804305 -44039551 + B3 SINE B2 90 207 -9 6 1178 257 286 65 0 chr11 77804432 77804509 -44039347 - ID2 SINE ID 0 83 2 7 1178 237 372 35 0 chr11 77804519 77804632 -44039224 - PB1D10 SINE Alu 0 117 1 7 1178 194 0 39 0 chr11 77804672 77804698 -44039158 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 1178 272 289 35 35 chr11 77805053 77805139 -44038717 + PB1D7 SINE Alu 10 95 -25 7 1178 352 224 169 39 chr11 77805246 77805446 -44038410 - L1MB7 LINE L1 -313 5865 5651 7 1178 566 202 65 32 chr11 77805460 77805583 -44038273 - B1_Mus2 SINE Alu 0 147 21 7 1178 290 324 62 41 chr11 77805466 77805611 -44038245 - B4A SINE B4 -71 221 74 7 1178 763 249 193 0 chr11 77805613 77805862 -44037994 - L1MB7 LINE L1 -516 5668 5372 7 1178 279 0 0 0 chr11 77805935 77805966 -44037890 + (TCC)n Simple_repeat Simple_repeat 2 32 0 7 1178 334 191 32 0 chr11 77806094 77806175 -44037681 - L1MB7 LINE L1 -885 5261 5173 7 1178 231 266 153 18 chr11 77806175 77806286 -44037570 - LTR48 LTR ERV1 -558 229 104 7 1178 601 189 0 9 chr11 77806674 77806781 -44037075 - PB1D9 SINE Alu -14 106 1 7 1178 306 180 0 0 chr11 77806865 77806926 -44036930 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1178 706 228 116 6 chr11 77806935 77806957 -44036899 - B3 SINE B2 -13 203 179 7 1178 189 0 0 0 chr11 77806957 77806978 -44036878 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 7 1178 1343 32 0 0 chr11 77806978 77807136 -44036720 - B2_Mm1t SINE B2 -33 160 3 7 1178 377 304 123 34 chr11 77807249 77807394 -44036462 + ID_B1 SINE B4 1 156 -68 7 1178 230 279 101 61 chr11 77807343 77807442 -44036414 + PB1D10 SINE Alu 15 117 0 7 1178 721 281 67 5 chr11 77807627 77807820 -44036036 - B3 SINE B2 -1 215 11 7 1178 668 255 97 20 chr11 77807864 77808060 -44035796 - B3 SINE B2 -3 213 3 7 1178 338 259 71 36 chr11 77808241 77808353 -44035503 + PB1D10 SINE Alu 2 117 0 7 1178 1044 85 0 44 chr11 77808490 77808650 -44035206 - B2_Mm2 SINE B2 -18 177 25 7 1178 388 274 0 12 chr11 77808939 77809024 -44034832 - RSINE1 SINE B4 -79 86 3 7 1178 2248 188 38 42 chr11 77809817 77810263 -44033593 - RLTR12B LTR ERVK -10 518 75 7 1178 1015 133 34 11 chr11 77810263 77810438 -44033418 + B2_Mm2 SINE B2 3 181 -14 7 1178 312 82 0 0 chr11 77810494 77810541 -44033315 - RLTR12B LTR ERVK -521 47 1 7 1178 1161 63 0 0 chr11 77810604 77810747 -44033109 - B1_Mm SINE Alu 0 147 5 7 1178 186 118 0 0 chr11 77810749 77810783 -44033073 + (C)n Simple_repeat Simple_repeat 1 34 0 7 1178 333 0 0 0 chr11 77811338 77811375 -44032481 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 7 1178 198 0 0 0 chr11 77812289 77812311 -44031545 + (TGG)n Simple_repeat Simple_repeat 1 22 0 7 1178 227 343 0 54 chr11 77812344 77812418 -44031438 + PB1D9 SINE Alu 45 114 -6 7 1178 411 256 39 10 chr11 77812570 77812667 -44031189 + PB1D7 SINE Alu 21 127 0 7 1178 227 290 35 94 chr11 77813523 77813551 -44030305 - YREP_Mm Unknown Unknown -1475 337 182 7 1178 959 123 29 0 chr11 77813551 77813689 -44030167 + B1_Mus1 SINE Alu 1 142 -6 7 1178 21 71 0 0 chr11 77813694 77813736 -44030120 + AT_rich Low_complexity Low_complexity 1 42 0 7 1178 516 252 46 23 chr11 77813961 77814091 -44029765 - B1F SINE Alu -5 144 12 7 1178 276 132 0 0 chr11 77814105 77814126 -44029730 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1178 1263 41 0 0 chr11 77814126 77814273 -44029583 - B1_Mus2 SINE Alu 0 147 1 7 1178 276 132 0 0 chr11 77814273 77814304 -44029552 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1178 249 196 22 0 chr11 77814314 77814360 -44029496 + B1F2 SINE Alu 37 83 -66 7 1178 227 263 0 66 chr11 77814360 77814375 -44029481 + MT2B LTR ERVL 194 250 -351 7 1178 574 225 0 32 chr11 77814382 77814506 -44029350 + PB1D9 SINE Alu 1 120 0 7 1178 1272 41 0 0 chr11 77814610 77814756 -44029100 - B1_Mus2 SINE Alu 0 147 2 7 1178 997 251 21 40 chr11 77814758 77814995 -44028861 - B3 SINE B2 0 216 5 7 1178 915 169 22 55 chr11 77816521 77816688 -44027168 + B2_Mm2 SINE B2 6 168 -27 7 1178 1182 117 50 0 chr11 77816688 77816868 -44026988 - B2_Mm2 SINE B2 -6 189 1 7 1178 915 169 22 55 chr11 77816868 77816882 -44026974 + B2_Mm2 SINE B2 169 181 -14 7 1178 1264 41 0 0 chr11 77816895 77817042 -44026814 - B1_Mus2 SINE Alu 0 147 1 7 1178 501 257 9 44 chr11 77817163 77817277 -44026579 - PB1D7 SINE Alu -10 110 1 7 1178 244 374 0 11 chr11 77817320 77817412 -44026444 - PB1D10 SINE Alu -14 103 13 7 1178 182 232 50 67 chr11 77818114 77818174 -44025682 - MER5A DNA MER1_type -3 186 128 7 1178 470 235 146 7 chr11 77818203 77818340 -44025516 - ID_B1 SINE B4 -1 223 68 7 1178 1692 16 11 0 chr11 77818359 77818550 -44025306 - B2_Mm1a SINE B2 0 193 1 7 1178 211 224 190 0 chr11 77818614 77818672 -44025184 - MER5A DNA MER1_type -114 75 7 7 1178 563 279 47 0 chr11 77818810 77818939 -44024917 - B1F SINE Alu -8 141 7 7 1178 865 253 23 0 chr11 77819007 77819181 -44024675 + B3A SINE B2 11 188 -10 7 1178 652 324 184 10 chr11 77819252 77819666 -44024190 - MLT1H1 LTR MaLR -3 552 67 7 1178 1307 20 0 0 chr11 77820579 77820725 -44023131 + B1_Mm SINE Alu 1 146 -1 7 1178 280 187 126 0 chr11 77820949 77821027 -44022829 + PB1D9 SINE Alu 1 102 -15 7 1178 247 344 109 30 chr11 77821561 77821762 -44022094 - MIRb SINE MIR -27 241 25 7 1178 944 225 89 0 chr11 77822591 77822782 -44021074 + B3 SINE B2 4 211 -5 7 1178 455 204 125 0 chr11 77823514 77823602 -44020254 + PB1D10 SINE Alu 16 114 -3 7 1178 743 270 53 19 chr11 77823605 77823813 -44020043 + B3 SINE B2 2 216 0 7 1178 658 278 42 25 chr11 77823833 77824042 -44019814 + B3A SINE B2 1 207 -9 7 1178 1080 65 43 0 chr11 77824068 77824206 -44019650 - B1_Mus1 SINE Alu 0 148 5 7 1178 360 275 0 0 chr11 77824244 77824313 -44019543 + ID4 SINE ID 6 74 -9 7 1178 270 311 180 17 chr11 77824362 77824594 -44019262 - L1MC4a LINE L1 -1915 5967 5718 7 1178 930 239 5 37 chr11 77824594 77824811 -44019045 - B3 SINE B2 -6 210 1 7 1178 270 311 180 17 chr11 77824811 77824928 -44018928 - L1MC4a LINE L1 -2165 5717 5561 7 1178 551 220 119 0 chr11 77825038 77825156 -44018700 + B1F SINE Alu 18 149 0 7 1178 548 224 88 122 chr11 77825158 77825263 -44018593 + B4 SINE B4 2 104 -188 7 1178 1710 16 11 0 chr11 77825263 77825454 -44018402 - B2_Mm1t SINE B2 0 193 1 7 1178 548 224 88 122 chr11 77825454 77825552 -44018304 + B4 SINE B4 105 198 -94 7 1178 902 83 0 40 chr11 77825455 77825580 -44018276 + B1_Mm SINE Alu 11 130 -17 7 1178 273 277 262 7 chr11 77825596 77825745 -44018111 + B4A SINE B4 91 277 -15 7 1178 375 23 0 0 chr11 77825748 77825792 -44018064 + (CATA)n Simple_repeat Simple_repeat 1 44 0 7 1178 321 247 112 0 chr11 77825832 77825921 -44017935 + PB1D9 SINE Alu 1 99 -21 7 1178 228 135 0 0 chr11 77825936 77825973 -44017883 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 7 1178 416 297 133 35 chr11 77825988 77826131 -44017725 + RSINE1 SINE B4 6 162 -3 7 1178 604 96 173 0 chr11 77826169 77826273 -44017583 + B1_Mus1 SINE Alu 14 135 -13 7 1178 284 325 62 12 chr11 77826943 77827024 -44016832 + PB1D10 SINE Alu 1 85 -32 7 1178 355 290 214 0 chr11 77827161 77827292 -44016564 + RSINE1 SINE B4 7 165 0 7 1178 684 188 120 0 chr11 77827467 77827600 -44016256 + B1_Mur1 SINE Alu 1 149 0 7 1178 402 214 33 11 chr11 77827686 77827776 -44016080 + RSINE1 SINE B4 2 93 -72 7 1178 435 264 39 45 chr11 77828118 77828273 -44015583 + ID_B1 SINE B4 71 224 0 7 1178 403 306 45 0 chr11 77828554 77828665 -44015191 - RSINE1 SINE B4 -22 143 28 7 1178 234 229 197 0 chr11 77829750 77829811 -44014045 + ID4 SINE ID 1 73 -10 7 1178 195 42 0 0 chr11 77830140 77830164 -44013692 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1178 674 244 15 0 chr11 77830313 77830448 -44013408 - B1_Mur3 SINE Alu 0 149 13 7 1178 545 192 390 0 chr11 77830465 77830611 -44013245 + B3 SINE B2 3 205 -11 7 1178 505 226 110 24 chr11 77830630 77830757 -44013099 - B1_Mur2 SINE Alu -7 142 5 7 1178 22 0 0 0 chr11 77830774 77830796 -44013060 + AT_rich Low_complexity Low_complexity 1 22 0 7 1178 318 262 175 32 chr11 77830798 77830987 -44012869 - B3 SINE B2 0 216 1 7 1178 790 194 330 72 chr11 77831941 77832274 -44011582 - MTD LTR MaLR 0 419 1 7 1178 628 137 0 31 chr11 77832451 77832549 -44011307 + B1_Mur4 SINE Alu 1 95 -55 7 1178 1152 79 0 0 chr11 77832876 77833016 -44010840 + B1_Mus2 SINE Alu 3 142 -5 7 1178 681 162 6 96 chr11 77833051 77833208 -44010648 + B1_Mus2 SINE Alu 1 143 -4 7 1178 2034 159 70 75 chr11 77833415 77833883 -44009973 - RMER4A LTR ERVK 0 466 1 7 1178 390 88 0 5 chr11 77833886 77833951 -44009905 - B2_Mm2 SINE B2 -107 109 47 7 1178 994 93 104 12 chr11 77833979 77834143 -44009713 - B2_Mm1t SINE B2 -14 179 1 7 1178 436 100 0 0 chr11 77834314 77834374 -44009482 + B2_Mm2 SINE B2 1 60 -135 7 1178 243 0 0 0 chr11 77834394 77834421 -44009435 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1178 994 76 0 8 chr11 77834424 77834557 -44009299 - B1_Mus1 SINE Alu -12 136 5 7 1178 377 235 0 0 chr11 77834956 77835037 -44008819 - B1_Mur4 SINE Alu -69 81 1 7 1178 387 273 36 66 chr11 77835089 77835257 -44008599 + L2a LINE L2 3235 3426 0 7 1178 1364 54 27 0 chr11 77838682 77838841 -44005015 + B2_Mm1a SINE B2 2 160 -33 7 1178 180 0 0 0 chr11 77838841 77838861 -44004995 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 7 1178 1364 54 27 0 chr11 77838861 77838885 -44004971 + B2_Mm1a SINE B2 161 189 -4 7 1178 224 156 44 0 chr11 77839974 77840019 -44003837 + MER5A DNA MER1_type 29 75 -114 7 1178 745 273 39 39 chr11 77840050 77840256 -44003600 + B4 SINE B4 53 258 -34 8 1178 397 305 9 0 chr11 77841228 77841333 -44002523 - PB1D7 SINE Alu -9 111 6 8 1178 228 376 0 86 chr11 77841480 77841573 -44002283 + ID_B1 SINE B4 84 168 -56 8 1178 927 185 70 9 chr11 77844276 77844489 -43999367 - URR1A DNA MER1_type 0 226 1 8 1178 247 281 60 12 chr11 77845089 77845172 -43998684 + PB1D10 SINE Alu 24 110 -7 8 1178 25 65 0 0 chr11 77846006 77846052 -43997804 + GC_rich Low_complexity Low_complexity 1 46 0 8 1178 211 224 103 0 chr11 77846471 77846529 -43997327 - L2b LINE L2 -314 3061 2998 8 1178 355 261 189 35 chr11 77846702 77846741 -43997115 + ID_B1 SINE B4 59 223 -1 8 1178 606 175 0 10 chr11 77846741 77846845 -43997011 + PB1D9 SINE Alu 16 118 -2 8 1178 25 0 0 0 chr11 77846851 77846876 -43996980 + AT_rich Low_complexity Low_complexity 1 25 0 8 1178 528 221 0 0 chr11 77846920 77847024 -43996832 + PB1D10 SINE Alu 1 104 -13 8 1178 356 279 18 26 chr11 77847278 77847392 -43996464 - MIR SINE MIR -105 157 45 8 1178 180 77 0 0 chr11 77848408 77848434 -43995422 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 8 1178 717 227 0 0 chr11 77848437 77848578 -43995278 - B1_Mur1 SINE Alu -8 141 1 8 1178 336 48 0 0 chr11 77848585 77848627 -43995229 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1178 585 182 123 70 chr11 77848629 77848750 -43995106 - B3A SINE B2 -26 190 58 8 1178 1443 73 0 5 chr11 77848750 77848943 -43994913 + B2_Mm2 SINE B2 1 192 -3 8 1178 585 193 0 56 chr11 77848943 77848992 -43994864 - B3A SINE B2 -141 57 11 8 1178 242 294 130 0 chr11 77849079 77849171 -43994685 - B1F SINE Alu -45 104 1 8 1178 328 241 44 44 chr11 77849924 77850015 -43993841 + PB1D7 SINE Alu 25 115 -5 8 1178 336 250 54 11 chr11 77850022 77850115 -43993741 + ID_B1 SINE B4 2 98 -126 8 1178 21 71 0 0 chr11 77851423 77851465 -43992391 + GC_rich Low_complexity Low_complexity 1 42 0 8 1178 252 0 0 0 chr11 77852579 77852607 -43991249 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1178 430 272 23 85 chr11 77852629 77852806 -43991050 - B3A SINE B2 -1 215 50 8 1178 339 297 0 19 chr11 77853023 77853126 -43990730 + RSINE1 SINE B4 2 102 -63 8 1178 288 111 0 0 chr11 77853142 77853187 -43990669 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1178 523 224 0 0 chr11 77853207 77853323 -43990533 + PB1D9 SINE Alu 3 118 -2 8 1178 1063 56 28 0 chr11 77853384 77853527 -43990329 + B1_Mm SINE Alu 1 147 0 8 1178 511 219 158 6 chr11 77853541 77853706 -43990150 + B3 SINE B2 27 216 0 8 1178 482 240 8 37 chr11 77854311 77854445 -43989411 + ID_B1 SINE B4 95 224 0 8 1178 946 156 28 6 chr11 77854473 77854654 -43989202 + B2_Mm2 SINE B2 1 185 -10 8 1178 784 107 115 0 chr11 77854655 77854777 -43989079 + B1_Mur4 SINE Alu 2 137 -13 8 1178 791 171 31 23 chr11 77854830 77855009 -43988847 + B3 SINE B2 4 189 -6 8 1178 1244 55 69 37 chr11 77855009 77855198 -43988658 - B2_Mm2 SINE B2 0 195 1 8 1178 352 220 99 10 chr11 77855369 77855470 -43988386 - PB1D9 SINE Alu -1 119 10 8 1178 331 286 211 5 chr11 77855499 77855707 -43988149 + Charlie4a DNA MER1_type 50 300 -208 8 1178 530 146 9 72 chr11 77855703 77855814 -43988042 - PB1D9 SINE Alu 0 120 17 8 1178 477 139 0 0 chr11 77855820 77855899 -43987957 - B1_Mm SINE Alu 0 147 69 8 1178 1348 60 44 0 chr11 77855901 77856083 -43987773 - B2_Mm2 SINE B2 -4 191 2 8 1178 745 224 102 25 chr11 77856089 77856286 -43987570 - B3 SINE B2 -4 212 1 8 1178 320 255 373 7 chr11 77856325 77856477 -43987379 + ID_B1 SINE B4 10 217 -7 8 1178 371 121 163 35 chr11 77856482 77856568 -43987288 + B3 SINE B2 112 208 -8 8 1178 227 174 0 34 chr11 77856595 77856616 -43987240 + A-rich Low_complexity Low_complexity 1 19 0 8 1178 1081 55 7 40 chr11 77856616 77856768 -43987088 + B1_Mus1 SINE Alu 2 148 0 8 1179 227 174 0 34 chr11 77856768 77856781 -43987075 + A-rich Low_complexity Low_complexity 20 32 0 8 1179 728 147 64 29 chr11 77856781 77856921 -43986935 + B1_Mus2 SINE Alu 1 145 -2 8 1179 1052 82 0 14 chr11 77856924 77857072 -43986784 + B1_Mm SINE Alu 1 146 -1 8 1179 227 174 0 34 chr11 77857072 77857091 -43986765 + A-rich Low_complexity Low_complexity 33 51 0 8 1179 1126 48 7 0 chr11 77857091 77857236 -43986620 + B1_Mus2 SINE Alu 2 147 0 8 1179 227 174 0 34 chr11 77857236 77857265 -43986591 + A-rich Low_complexity Low_complexity 52 80 0 8 1179 207 0 0 0 chr11 77857357 77857380 -43986476 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1179 1206 34 0 0 chr11 77857380 77857527 -43986329 - B1_Mus2 SINE Alu 0 147 1 8 1179 1567 37 0 0 chr11 77857531 77857719 -43986137 - B2_Mm1a SINE B2 -5 188 1 8 1179 886 95 0 0 chr11 77857805 77857931 -43985925 - B1_Mm SINE Alu 0 147 22 8 1179 368 278 10 67 chr11 77857939 77858043 -43985813 + PB1D7 SINE Alu 1 98 -22 8 1179 297 276 22 44 chr11 77858115 77858206 -43985650 + B4A SINE B4 186 274 -18 8 1179 180 125 0 0 chr11 77858231 77858263 -43985593 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1179 809 223 52 21 chr11 77858859 77859051 -43984805 + B3A SINE B2 1 198 0 8 1179 451 229 130 0 chr11 77859063 77859194 -43984662 + B1_Mur1 SINE Alu 1 148 -1 8 1179 2451 62 99 0 chr11 77859205 77859557 -43984299 - MTB LTR MaLR 0 400 14 8 1179 650 106 57 0 chr11 77859538 77859661 -43984195 - MTB-int LTR MaLR -10 1088 959 8 1179 403 129 71 0 chr11 77859648 77859718 -43984138 - B2_Mm1t SINE B2 -7 186 112 8 1179 1154 48 0 7 chr11 77859718 77859865 -43983991 + B1_Mm SINE Alu 1 146 -1 8 1179 494 109 0 11 chr11 77859870 77859963 -43983893 - MTB-int LTR MaLR -118 980 889 8 1179 2517 84 146 9 chr11 77859961 77860533 -43983323 - MTB-int LTR MaLR -452 646 1 8 1179 911 90 210 0 chr11 77860533 77860700 -43983156 - MTB LTR MaLR 0 400 199 8 1179 797 86 62 41 chr11 77860693 77860838 -43983018 - B2_Mm2 SINE B2 -1 194 47 8 1179 273 67 67 0 chr11 77860855 77860900 -43982956 - B2_Mm1t SINE B2 -22 171 124 8 1179 384 138 0 0 chr11 77860897 77860955 -43982901 - B2_Mm2 SINE B2 -110 85 28 8 1179 1418 58 19 0 chr11 77860951 77861156 -43982700 - MTB LTR MaLR -191 209 1 8 1179 378 222 100 0 chr11 77861172 77861262 -43982594 + ID_B1 SINE B4 5 103 -121 8 1179 401 242 40 10 chr11 77861363 77861463 -43982393 - MER3 DNA MER1_type -96 113 11 8 1179 454 189 21 10 chr11 77861567 77861663 -43982193 + PB1D9 SINE Alu 24 120 0 8 1179 261 0 0 0 chr11 77861860 77861889 -43981967 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1179 1199 41 0 0 chr11 77861961 77862108 -43981748 - B1_Mus2 SINE Alu 0 147 1 8 1179 1495 43 27 0 chr11 77862117 77862305 -43981551 - B2_Mm1a SINE B2 0 193 1 8 1179 186 286 64 13 chr11 77862356 77862434 -43981422 + L2c LINE L2 3266 3347 -40 8 1179 22 0 0 0 chr11 77862563 77862585 -43981271 + AT_rich Low_complexity Low_complexity 1 22 0 8 1179 326 303 56 13 chr11 77862588 77862710 -43981146 + PB1D7 SINE Alu 1 126 -23 8 1179 688 218 0 58 chr11 77862702 77862858 -43980998 + RSINE1 SINE B4 18 164 -1 8 1179 762 182 32 7 chr11 77863278 77863433 -43980423 - MTD LTR MaLR 0 419 261 8 1179 338 317 40 8 chr11 77863622 77863746 -43980110 + B1F SINE Alu 14 141 -8 8 1179 518 237 144 8 chr11 77863744 77863876 -43979980 + ID_B1 SINE B4 70 219 -5 8 1179 903 225 20 5 chr11 77865049 77865250 -43978606 + B3 SINE B2 7 210 -6 8 1179 241 279 0 16 chr11 77865490 77865552 -43978304 + C-rich Low_complexity Low_complexity 3 63 0 8 1179 294 255 0 0 chr11 77865602 77865675 -43978181 + ID4 SINE ID 20 92 -60 8 1179 393 22 0 0 chr11 77865998 77866044 -43977812 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 8 1179 709 125 50 0 chr11 77866058 77866178 -43977678 - B1_Mus2 SINE Alu -12 135 10 8 1179 330 250 79 0 chr11 77869503 77869579 -43974277 + ID4_ SINE ID 2 83 0 8 1179 213 121 0 0 chr11 77869580 77869613 -43974243 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 8 1179 378 155 14 14 chr11 77869621 77869693 -43974163 + B4 SINE B4 6 77 -215 8 1179 1065 128 42 26 chr11 77869703 77869895 -43973961 - B2_Mm2 SINE B2 0 195 1 8 1179 852 177 0 0 chr11 77869921 77870068 -43973788 + B1_Mur3 SINE Alu 2 148 -1 8 1179 374 281 0 0 chr11 77870116 77870205 -43973651 + B4 SINE B4 202 290 -2 8 1179 27 70 0 14 chr11 77870241 77870255 -43973601 + AT_rich Low_complexity Low_complexity 1 14 0 8 1179 961 148 142 5 chr11 77870255 77870445 -43973411 + B3 SINE B2 1 216 0 8 1179 27 70 0 14 chr11 77870445 77870503 -43973353 + AT_rich Low_complexity Low_complexity 1 58 0 8 1179 258 278 94 56 chr11 77874263 77874277 -43969579 + YREP_Mm Unknown Unknown 164 235 -1577 8 1179 545 237 46 0 chr11 77874277 77874408 -43969448 - ID_B1 SINE B4 -4 220 84 8 1179 258 278 94 56 chr11 77874408 77874423 -43969433 + YREP_Mm Unknown Unknown 236 329 -1483 8 1179 625 210 64 35 chr11 77874437 77874610 -43969246 + B4A SINE B4 2 179 -113 8 1179 286 271 81 48 chr11 77874708 77874832 -43969024 + RSINE1 SINE B4 2 129 -36 8 1179 425 207 24 0 chr11 77874852 77874934 -43968922 + B1_Mur1 SINE Alu 66 149 0 8 1179 263 283 54 0 chr11 77874935 77875027 -43968829 + PB1D10 SINE Alu 5 101 -16 8 1179 357 245 52 21 chr11 77875066 77875162 -43968694 + PB1D7 SINE Alu 22 120 0 8 1179 738 241 57 29 chr11 77875228 77875437 -43968419 + B3 SINE B2 1 215 -1 8 1179 285 323 0 3 chr11 77875497 77875604 -43968252 + PB1D7 SINE Alu 7 113 -7 9 1179 740 256 27 31 chr11 77875605 77875827 -43968029 + ID_B1 SINE B4 1 221 -3 9 1179 297 243 14 0 chr11 77875835 77875905 -43967951 + ID4_ SINE ID 1 71 -12 9 1179 24 0 0 0 chr11 77876064 77876088 -43967768 + AT_rich Low_complexity Low_complexity 1 24 0 9 1179 21 0 0 0 chr11 77876160 77876181 -43967675 + AT_rich Low_complexity Low_complexity 1 21 0 9 1179 661 283 88 38 chr11 77876230 77876469 -43967387 + MLT1G1 LTR MaLR 1 251 -328 9 1179 352 243 87 14 chr11 77876474 77876612 -43967244 - B1F1 SINE Alu 0 149 2 9 1179 221 191 110 68 chr11 77876644 77876717 -43967139 - B1_Mus2 SINE Alu 0 147 72 9 1179 265 167 66 16 chr11 77876663 77876724 -43967132 + 4.5SRNA scRNA scRNA 27 90 -4 9 1179 578 131 19 75 chr11 77876671 77876778 -43967078 + B1_Mus1 SINE Alu 40 140 -8 9 1179 252 86 0 0 chr11 77876782 77876817 -43967039 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 9 1179 186 43 0 0 chr11 77876845 77876868 -43966988 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1179 1533 33 0 0 chr11 77876984 77877167 -43966689 + B2_Mm1a SINE B2 2 184 -9 9 1179 250 169 15 44 chr11 77877174 77877210 -43966646 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 9 1179 1031 55 6 70 chr11 77877210 77877367 -43966489 + B1_Mus2 SINE Alu 1 147 0 9 1179 250 169 15 44 chr11 77877367 77877398 -43966458 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 9 1179 821 162 207 6 chr11 77877403 77877577 -43966279 + B3 SINE B2 1 209 -7 9 1179 1172 68 0 0 chr11 77877587 77877735 -43966121 - B1_Mus1 SINE Alu 0 148 1 9 1179 28 0 0 0 chr11 77877743 77877771 -43966085 + AT_rich Low_complexity Low_complexity 1 28 0 9 1179 1037 90 21 0 chr11 77877801 77877945 -43965911 + B1_Mus1 SINE Alu 1 147 -1 9 1179 466 256 105 30 chr11 77877965 77878098 -43965758 + ID_B1 SINE B4 82 224 0 9 1179 474 229 23 62 chr11 77878115 77878245 -43965611 + B4A SINE B4 3 127 -165 9 1179 278 310 0 11 chr11 77878258 77878346 -43965510 + B4A SINE B4 186 272 -20 9 1179 1262 71 15 75 chr11 77878414 77878613 -43965243 - B2_Mm2 SINE B2 -8 187 1 9 1179 580 172 163 8 chr11 77878656 77878785 -43965071 - B1_Mur1 SINE Alu 0 149 1 9 1179 697 152 120 8 chr11 77878852 77878985 -43964871 - B1_Mus1 SINE Alu 0 148 1 9 1179 206 380 32 43 chr11 77878989 77879176 -43964680 - MIRb SINE MIR -59 209 25 9 1179 180 282 92 53 chr11 77880028 77880159 -43963697 - MIRb SINE MIR -16 252 117 9 1179 305 358 0 0 chr11 77880425 77880520 -43963336 + ID_B1 SINE B4 110 204 -20 9 1179 387 0 0 0 chr11 77880527 77880570 -43963286 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1179 221 196 22 0 chr11 77880603 77880649 -43963207 + ID SINE ID 1 47 -177 9 1179 273 312 51 19 chr11 77880744 77880896 -43962960 - MIR SINE MIR -77 185 36 9 1179 234 0 0 0 chr11 77881506 77881532 -43962324 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1179 1088 92 0 0 chr11 77881536 77881678 -43962178 - B1_Mus1 SINE Alu -5 143 2 9 1179 252 269 76 0 chr11 77881699 77881818 -43962038 - B3A SINE B2 -4 194 67 9 1179 189 132 0 0 chr11 77881904 77881942 -43961914 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1179 1116 56 7 0 chr11 77881992 77882136 -43961720 - B1_Mus1 SINE Alu 0 148 4 9 1179 244 286 213 8 chr11 77882200 77882327 -43961529 - B3A SINE B2 -29 169 17 9 1179 468 229 46 0 chr11 77882389 77882498 -43961358 - PB1D10 SINE Alu 0 117 4 9 1179 425 319 7 7 chr11 77882598 77882737 -43961119 - B1F SINE Alu -1 148 10 9 1179 189 107 0 0 chr11 77882739 77882767 -43961089 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 9 1179 324 311 0 0 chr11 77882767 77882870 -43960986 - ID_B1 SINE B4 -41 183 81 9 1179 1035 108 0 0 chr11 77882914 77883062 -43960794 + B1_Mus1 SINE Alu 1 148 0 9 1179 191 222 93 0 chr11 77883678 77883732 -43960124 - MIRc SINE MIR -141 127 69 9 1179 213 285 153 0 chr11 77883770 77883905 -43959951 - MIR SINE MIR -80 182 32 9 1179 201 239 22 0 chr11 77884068 77884114 -43959742 + GA-rich Low_complexity Low_complexity 3 49 0 9 1179 375 304 0 43 chr11 77884231 77884372 -43959484 + ID_B1 SINE B4 70 204 -20 9 1179 497 313 18 36 chr11 77884394 77884571 -43959285 + ID_B1 SINE B4 2 182 -42 9 1179 625 172 90 0 chr11 77884571 77884705 -43959151 + B1_Mur4 SINE Alu 4 149 -1 9 1179 497 313 18 36 chr11 77884705 77884752 -43959104 + ID_B1 SINE B4 183 222 -2 9 1179 682 184 14 14 chr11 77884761 77884904 -43958952 + B1_Mur1 SINE Alu 6 148 -1 9 1179 1217 21 0 0 chr11 77884968 77885113 -43958743 + B1_Mm SINE Alu 2 146 -1 9 1179 25 0 0 0 chr11 77885115 77885140 -43958716 + AT_rich Low_complexity Low_complexity 1 25 0 9 1179 387 280 10 10 chr11 77886929 77887030 -43956826 + B1F2 SINE Alu 48 148 -1 9 1179 669 74 0 41 chr11 77887325 77887423 -43956433 - L1_Mus3 LINE L1 -155 6483 6390 9 1179 473 291 78 48 chr11 77888298 77888504 -43955352 - ID_B1 SINE B4 -9 215 4 9 1179 672 146 56 16 chr11 77888513 77888638 -43955218 - B1F2 SINE Alu -19 130 1 9 1179 543 306 0 7 chr11 77888640 77888775 -43955081 - ID_B1 SINE B4 0 224 91 9 1179 1549 53 5 0 chr11 77889944 77890133 -43953723 + B2_Mm1t SINE B2 3 192 -1 9 1179 684 69 0 47 chr11 77890143 77890250 -43953606 + B1_Mm SINE Alu 1 102 -45 9 1179 296 189 14 42 chr11 77890187 77890259 -43953597 + RLTR25B LTR ERVK 441 510 -518 9 1179 706 138 8 8 chr11 77890289 77890406 -43953450 - B1_Mur2 SINE Alu -16 133 17 9 1179 270 269 13 0 chr11 77890570 77890648 -43953208 + ID4 SINE ID 4 82 -1 9 1179 300 340 34 27 chr11 77890691 77890740 -43953116 + B1F2 SINE Alu 1 48 -101 9 1179 1159 68 0 45 chr11 77890740 77890895 -43952961 + B1_Mus1 SINE Alu 1 148 0 9 1179 300 340 34 27 chr11 77890895 77890993 -43952863 + B1F2 SINE Alu 49 149 0 9 1179 395 162 113 17 chr11 77891000 77891128 -43952728 + B1_Mus2 SINE Alu 1 149 0 9 1179 517 141 12 0 chr11 77891159 77891244 -43952612 - B1_Mur4 SINE Alu -58 92 7 9 1179 23 0 0 0 chr11 77891475 77891498 -43952358 + AT_rich Low_complexity Low_complexity 1 23 0 9 1179 1028 235 20 0 chr11 77891510 77891714 -43952142 + B3 SINE B2 2 209 -7 9 1179 605 48 0 0 chr11 77892057 77892141 -43951715 + B2_Mm1t SINE B2 109 192 -1 9 1179 1726 0 21 0 chr11 77892143 77892332 -43951524 + B2_Mm1a SINE B2 1 193 0 9 1179 338 173 0 19 chr11 77892340 77892422 -43951434 + PB1D9 SINE Alu 42 120 0 9 1179 326 234 128 0 chr11 77892465 77892559 -43951297 + PB1D7 SINE Alu 5 110 -10 9 1179 235 273 113 43 chr11 77892651 77892766 -43951090 - FAM SINE Alu -52 259 137 9 1179 280 271 94 0 chr11 77892702 77892787 -43951069 - ID_B1 SINE B4 -77 147 55 9 1179 308 283 112 9 chr11 77893166 77893273 -43950583 - RSINE1 SINE B4 -19 146 29 9 1179 279 274 18 64 chr11 77893419 77893439 -43950417 + ID SINE ID 72 86 -138 9 1179 372 269 65 0 chr11 77893439 77893547 -43950309 + PB1D10 SINE Alu 2 116 -1 9 1179 2103 152 61 13 chr11 77894362 77894756 -43949100 - MTC LTR MaLR -8 413 1 9 1179 322 288 67 9 chr11 77894981 77895086 -43948770 + PB1D10 SINE Alu 1 111 -6 9 1179 1707 26 0 0 chr11 77895095 77895287 -43948569 + B2_Mm1a SINE B2 1 192 -1 9 1179 26 0 0 0 chr11 77895288 77895314 -43948542 + AT_rich Low_complexity Low_complexity 1 26 0 9 1179 533 234 0 46 chr11 77895358 77895488 -43948368 + B1F2 SINE Alu 26 149 0 9 1179 376 297 39 0 chr11 77895555 77895683 -43948173 + B1F2 SINE Alu 5 137 -12 9 1179 467 184 146 0 chr11 77895859 77895962 -43947894 - PB1D9 SINE Alu -2 118 1 9 1179 279 314 84 31 chr11 77895965 77896128 -43947728 - B3A SINE B2 -4 212 34 9 1179 804 62 0 0 chr11 77896109 77896221 -43947635 + B1_Mus1 SINE Alu 37 148 0 9 1179 282 152 0 0 chr11 77896221 77896246 -43947610 + A-rich Low_complexity Low_complexity 1 25 0 9 1179 1150 68 0 7 chr11 77896246 77896394 -43947462 + B1_Mus2 SINE Alu 1 147 0 9 1179 282 152 0 0 chr11 77896394 77896434 -43947422 + A-rich Low_complexity Low_complexity 26 65 0 9 1179 188 67 33 0 chr11 77896600 77896630 -43947226 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 9 1179 2214 181 105 39 chr11 77896630 77897096 -43946760 - Lx5 LINE L1 -1 7049 6553 9 1179 2362 160 25 34 chr11 77897116 77897594 -43946262 - Lx5 LINE L1 -698 6352 5879 9 1179 289 291 75 37 chr11 77897594 77897701 -43946155 - B1F2 SINE Alu -25 124 14 9 1179 400 36 0 0 chr11 77897816 77897872 -43945984 - B1_Mur4 SINE Alu 0 150 95 9 1179 354 215 20 61 chr11 77897938 77898037 -43945819 + B1_Mur1 SINE Alu 49 143 -6 9 1179 379 324 35 120 chr11 77898300 77898500 -43945356 - ID_B1 SINE B4 -31 193 11 9 1179 270 138 0 0 chr11 77898510 77898568 -43945288 + (T)n Simple_repeat Simple_repeat 1 58 0 9 1179 1148 48 0 46 chr11 77898568 77898721 -43945135 - B1_Mm SINE Alu 0 147 2 9 1179 871 56 14 20 chr11 77898721 77898867 -43944989 + (TTCTC)n Simple_repeat Simple_repeat 5 149 0 9 1179 662 98 29 0 chr11 77898917 77899019 -43944837 - Lx5 LINE L1 -1042 6008 5904 9 1179 631 63 0 78 chr11 77899047 77899150 -43944706 + B1_Mus2 SINE Alu 53 147 0 9 1179 1092 99 50 44 chr11 77899153 77899333 -43944523 - B2_Mm2 SINE B2 -13 182 2 9 1179 399 21 0 0 chr11 77899352 77899400 -43944456 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 9 1179 1107 74 0 0 chr11 77899400 77899535 -43944321 - B1_Mus1 SINE Alu -12 136 2 1 1179 793 200 0 7 chr11 77899711 77899857 -43943999 + B1_Mus2 SINE Alu 1 145 -2 1 1179 276 97 16 31 chr11 77899879 77899943 -43943913 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 1 1179 2056 214 221 23 chr11 77900023 77900377 -43943479 + Lx4B LINE L1 6332 6761 -297 1 1179 1447 76 16 0 chr11 77900377 77900561 -43943295 - B2_Mm2 SINE B2 -7 188 2 1 1179 2056 214 221 23 chr11 77900561 77900813 -43943043 + Lx4B LINE L1 6762 7058 0 1 1179 348 206 65 11 chr11 77900868 77900961 -43942895 - ID_B1 SINE B4 -4 220 123 1 1179 239 286 87 11 chr11 77900977 77901069 -43942787 + MIRb SINE MIR 89 187 -81 1 1179 263 268 14 14 chr11 77901091 77901163 -43942693 + B1F2 SINE Alu 9 80 -69 1 1179 255 309 37 0 chr11 77901394 77901475 -43942381 - PB1D7 SINE Alu -2 118 35 1 1179 329 256 0 13 chr11 77901480 77901559 -43942297 - B1F SINE Alu -1 148 71 1 1179 266 247 0 114 chr11 77901559 77901585 -43942271 - ID_B1 SINE B4 0 224 132 1 1179 675 202 0 0 chr11 77901613 77901742 -43942114 - B1_Mur4 SINE Alu 0 150 22 1 1179 3158 44 8 3 chr11 77901789 77902174 -43941682 - L1Md_F2 LINE L1 -3 6579 6193 1 1179 1040 57 0 0 chr11 77902192 77902332 -43941524 - B1_Mus1 SINE Alu 0 148 9 1 1179 270 336 19 28 chr11 77902451 77902558 -43941298 + PB1D10 SINE Alu 12 117 0 1 1179 323 170 8 29 chr11 77902583 77902658 -43941198 + B1_Mus2 SINE Alu 51 120 0 1 1179 247 206 15 0 chr11 77902660 77902728 -43941128 + A-rich Low_complexity Low_complexity 4 72 0 1 1179 689 160 114 0 chr11 77902861 77902992 -43940864 + B1_Mus1 SINE Alu 1 146 -2 1 1179 321 300 9 52 chr11 77903090 77903206 -43940650 + B3A SINE B2 9 119 -79 1 1179 336 48 0 0 chr11 77903207 77903249 -43940607 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1179 2571 102 151 59 chr11 77903252 77903521 -43940335 - RLTR19 LTR ERVK 0 499 182 1 1179 1150 76 7 0 chr11 77903521 77903666 -43940190 + B1_Mus2 SINE Alu 2 147 0 1 1179 387 0 0 0 chr11 77903670 77903713 -43940143 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1179 2571 102 151 59 chr11 77903713 77903895 -43939961 - RLTR19 LTR ERVK -318 181 1 1 1179 29 60 0 0 chr11 77903900 77903950 -43939906 + AT_rich Low_complexity Low_complexity 1 50 0 1 1179 1075 82 0 40 chr11 77903957 77904109 -43939747 + B1_Mus2 SINE Alu 1 146 -1 1 1179 811 230 20 15 chr11 77904116 77904315 -43939541 - B3 SINE B2 -14 202 3 1 1179 2611 62 15 3 chr11 77904328 77904666 -43939190 - L1_Mus3 LINE L1 -4 6634 6293 1 1179 521 184 29 194 chr11 77904696 77904871 -43938985 + B1_Mur1 SINE Alu 1 146 -3 1 1179 373 265 10 10 chr11 77904892 77904995 -43938861 + B1_Mur4 SINE Alu 18 120 -30 1 1179 573 269 65 15 chr11 77905010 77905210 -43938646 + ID_B1 SINE B4 1 210 -14 1 1179 186 191 0 0 chr11 77905352 77905399 -43938457 + (ATGGTG)n Simple_repeat Simple_repeat 1 47 0 1 1179 1423 70 32 0 chr11 77905552 77905737 -43938119 - B2_Mm2 SINE B2 0 195 5 1 1179 354 338 14 42 chr11 77905741 77905883 -43937973 - B1F1 SINE Alu 0 149 12 1 1179 280 302 0 55 chr11 77905935 77906026 -43937830 + B3 SINE B2 130 215 -1 1 1179 198 0 0 0 chr11 77906026 77906048 -43937808 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 1 1179 357 24 0 0 chr11 77906048 77906089 -43937767 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1179 819 135 6 55 chr11 77906109 77906273 -43937583 - RMER10A LTR ERVL -286 156 1 1 1179 746 192 155 27 chr11 77906351 77906538 -43937318 - B3 SINE B2 -5 211 1 1 1179 192 200 0 0 chr11 77906557 77906602 -43937254 + A-rich Low_complexity Low_complexity 77 121 0 1 1179 559 236 32 0 chr11 77906838 77906961 -43936895 + B1F SINE Alu 12 138 -11 1 1179 192 125 0 0 chr11 77907048 77907080 -43936776 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1179 1430 76 27 0 chr11 77907094 77907279 -43936577 - B2_Mm2 SINE B2 -1 194 5 1 1179 434 234 103 0 chr11 77907299 77907406 -43936450 - B1_Mur3 SINE Alu -29 120 3 1 1179 1673 27 0 0 chr11 77907453 77907640 -43936216 + B2_Mm1a SINE B2 2 188 -5 1 1179 332 271 10 40 chr11 77907652 77907752 -43936104 + B3A SINE B2 1 97 -101 1 1179 318 312 0 84 chr11 77909279 77909398 -43934458 - PB1 SINE Alu -2 125 17 1 1179 309 235 177 40 chr11 77909357 77909481 -43934375 - B4A SINE B4 -151 141 1 1 1179 333 274 17 34 chr11 77909556 77909673 -43934183 - PB1D10 SINE Alu 0 117 3 1 1179 264 59 0 0 chr11 77909683 77909717 -43934139 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1 1179 419 132 0 0 chr11 77909724 77909800 -43934056 - Lx3A LINE L1 -8 6973 6898 1 1179 612 200 0 0 chr11 77909820 77909975 -43933881 + CT-rich Low_complexity Low_complexity 1 155 0 1 1179 329 68 0 0 chr11 77909975 77910019 -43933837 - B1_Mur4 SINE Alu -6 144 101 1 1179 22 35 0 0 chr11 77910031 77910060 -43933796 + AT_rich Low_complexity Low_complexity 1 29 0 1 1179 605 233 23 0 chr11 77910061 77910190 -43933666 + B3 SINE B2 1 132 -84 1 1179 1135 68 0 13 chr11 77910853 77911002 -43932854 - B1_Mus1 SINE Alu 0 148 2 1 1179 508 260 8 31 chr11 77911597 77911724 -43932132 + RSINE1 SINE B4 7 130 -35 1 1179 324 298 41 0 chr11 77911926 77912047 -43931809 + BC1_Mm scRNA scRNA 1 126 -26 1 1179 624 223 170 0 chr11 77912063 77912251 -43931605 + ID_B1 SINE B4 3 222 -2 1 1179 501 279 16 16 chr11 77912293 77912417 -43931439 + B1F SINE Alu 5 128 -21 1 1179 523 144 33 0 chr11 77912625 77912715 -43931141 - B1_Mus2 SINE Alu -1 146 54 1 1179 606 226 45 64 chr11 77912717 77912753 -43931103 + B3A SINE B2 8 36 -162 1 1179 976 110 15 0 chr11 77912753 77912889 -43930967 + B1_Mur4 SINE Alu 5 142 -8 1 1179 188 0 74 0 chr11 77912889 77912916 -43930940 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1179 606 226 45 64 chr11 77912916 77913034 -43930822 + B3A SINE B2 37 159 -39 1 1179 483 63 0 0 chr11 77913038 77913101 -43930755 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1179 368 282 29 0 chr11 77913111 77913214 -43930642 + PB1D10 SINE Alu 10 115 -2 1 1179 1170 174 41 0 chr11 77913214 77913410 -43930446 + B3 SINE B2 2 205 -11 1 1179 258 211 8 155 chr11 77913491 77913620 -43930236 + MT2B LTR ERVL 155 264 -337 1 1179 685 141 16 32 chr11 77913504 77913629 -43930227 + B1_Mur4 SINE Alu 2 124 -26 1 1179 216 158 0 0 chr11 77913725 77913763 -43930093 + T-rich Low_complexity Low_complexity 1 38 0 1 1179 398 263 163 64 chr11 77913763 77913966 -43929890 - ID_B1 SINE B4 0 224 2 1 1179 392 268 212 6 chr11 77914935 77915100 -43928756 - B3 SINE B2 -17 199 1 1 1179 317 244 91 23 chr11 77915143 77915231 -43928625 - RSINE1 SINE B4 -57 108 15 1 1179 515 325 9 72 chr11 77915256 77915384 -43928472 - ID_B1 SINE B4 -15 209 87 1 1179 1368 59 48 0 chr11 77915384 77915570 -43928286 - B2_Mm2 SINE B2 0 195 1 1 1179 515 325 9 72 chr11 77915570 77915663 -43928193 - ID SINE ID -138 86 2 1 1179 294 299 13 105 chr11 77915717 77915870 -43927986 + ID_B1 SINE B4 30 168 -56 1 1179 219 157 14 28 chr11 77916223 77916295 -43927561 + T-rich Low_complexity Low_complexity 1 71 0 1 1179 354 113 0 0 chr11 77916316 77916369 -43927487 - B1_Mus1 SINE Alu -95 53 1 1 1179 1279 113 16 0 chr11 77916394 77916580 -43927276 - B2_Mm2 SINE B2 -6 189 1 1 1179 790 237 102 0 chr11 77916590 77916776 -43927080 - B3 SINE B2 -10 206 2 1 1179 459 0 0 0 chr11 77916780 77916831 -43927025 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1179 793 207 14 0 chr11 77916842 77916982 -43926874 + B1_Mur1 SINE Alu 2 143 -6 1 1179 231 36 0 0 chr11 77917005 77917033 -43926823 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1179 256 313 143 39 chr11 77917059 77917204 -43926652 + ID_B1 SINE B4 1 224 0 1 1179 261 224 17 0 chr11 77917204 77917262 -43926594 + B1F SINE Alu 91 149 0 1 1179 415 314 6 78 chr11 77917282 77917448 -43926408 + ID_B1 SINE B4 26 179 -45 1 1179 1183 107 62 0 chr11 77917658 77917836 -43926020 + B2_Mm2 SINE B2 1 189 -6 1 1179 643 150 56 63 chr11 77917858 77918000 -43925856 - B1_Mus1 SINE Alu -7 141 1 1 1179 735 50 10 0 chr11 77918029 77918130 -43925726 - B1_Mus2 SINE Alu 0 147 46 1 1179 283 226 21 97 chr11 77918077 77918170 -43925686 - RLTR25A LTR ERVK -531 572 487 1 1179 748 143 17 8 chr11 77918262 77918420 -43925436 + B1_Mur2 SINE Alu 5 311 0 1 1179 231 36 0 0 chr11 77918500 77918528 -43925328 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1179 395 269 93 0 chr11 77918528 77918636 -43925220 - ID_B1 SINE B4 -13 211 94 1 1179 580 278 66 14 chr11 77918858 77919070 -43924786 - ID_B1 SINE B4 0 224 2 1 1179 225 288 15 0 chr11 77919073 77919139 -43924717 - PB1D10 SINE Alu -50 67 1 1 1179 234 0 0 0 chr11 77919182 77919208 -43924648 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1179 1190 54 0 13 chr11 77919267 77919417 -43924439 - B1_Mus1 SINE Alu 0 148 1 1 1179 844 222 43 0 chr11 77919701 77919886 -43923970 - B3 SINE B2 -23 193 1 1 1179 398 168 94 47 chr11 77919949 77920055 -43923801 - PB1D9 SINE Alu -8 112 2 1 1179 597 229 78 60 chr11 77920067 77920234 -43923622 - B3A SINE B2 -4 194 25 1 1179 352 326 59 7 chr11 77920325 77920461 -43923395 + ID_B1 SINE B4 82 224 0 1 1179 1149 54 0 26 chr11 77920513 77920664 -43923192 - B1_Mus1 SINE Alu 0 148 2 1 1179 1113 82 0 7 chr11 77920694 77920841 -43923015 - B1_Mm SINE Alu 0 147 2 1 1179 726 203 135 13 chr11 77920964 77921194 -43922662 + ORR1D1 LTR MaLR 117 374 0 1 1179 3664 122 139 24 chr11 77921365 77922043 -43921813 - RMER6A LTR ERVK 0 756 1 1 1179 1268 27 0 0 chr11 77922111 77922257 -43921599 - B1_Mm SINE Alu 0 147 2 1 1179 293 280 53 0 chr11 77922703 77922778 -43921078 + PB1D10 SINE Alu 7 85 -32 1 1179 267 269 0 65 chr11 77923039 77923145 -43920711 - ID4_ SINE ID -53 99 1 1 1179 659 192 17 0 chr11 77923308 77923428 -43920428 - B1_Mur1 SINE Alu -16 133 12 1 1179 318 314 8 16 chr11 77923484 77923607 -43920249 - B4A SINE B4 -169 123 2 1 1179 454 250 34 48 chr11 77923622 77923769 -43920087 - ID_B1 SINE B4 0 224 80 1 1179 285 259 58 23 chr11 77923778 77923865 -43919991 - B1F2 SINE Alu -49 100 11 1 1179 451 189 52 21 chr11 77923885 77923982 -43919874 - PB1D7 SINE Alu -9 111 12 1 1179 269 231 75 97 chr11 77924236 77924370 -43919486 + MIRc SINE MIR 121 251 -17 1 1179 537 16 0 0 chr11 77924672 77924734 -43919122 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1179 362 198 209 35 chr11 77924745 77924860 -43918996 - RSINE1 SINE B4 -29 136 2 1 1179 752 126 16 0 chr11 77925000 77925127 -43918729 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 1 1179 1155 62 0 0 chr11 77925128 77925272 -43918584 - B1_Mus1 SINE Alu -4 144 1 1 1179 782 168 174 20 chr11 77925324 77925519 -43918337 + URR1B DNA MER1_type 1 225 0 1 1179 181 0 69 0 chr11 77926132 77926161 -43917695 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1179 851 204 80 25 chr11 77926419 77926620 -43917236 - B3 SINE B2 0 216 5 1 1179 204 122 0 0 chr11 77926637 77926678 -43917178 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1179 1175 7 58 0 chr11 77926678 77926816 -43917040 - B1_Mm SINE Alu 0 147 2 1 1179 288 240 160 0 chr11 77926826 77926926 -43916930 - ID_B1 SINE B4 -7 217 102 1 1179 232 257 54 0 chr11 77927008 77927082 -43916774 - L1M5 LINE L1 -844 5302 5225 1 1179 263 271 152 23 chr11 77927812 77927944 -43915912 - B1F SINE Alu 0 149 1 1 1179 344 244 81 0 chr11 77928030 77928116 -43915740 - ID_B1 SINE B4 -128 96 4 1 1179 276 243 53 97 chr11 77930202 77930316 -43913540 - PB1D7 SINE Alu -5 115 7 1 1179 372 197 197 39 chr11 77930499 77930626 -43913230 - B1F SINE Alu -2 147 1 1 1179 21 0 0 0 chr11 77930724 77930745 -43913111 + AT_rich Low_complexity Low_complexity 1 21 0 1 1179 315 0 0 0 chr11 77931147 77931182 -43912674 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1179 22 0 0 0 chr11 77931263 77931285 -43912571 + AT_rich Low_complexity Low_complexity 1 22 0 1 1179 21 0 0 0 chr11 77931418 77931439 -43912417 + AT_rich Low_complexity Low_complexity 1 21 0 1 1179 585 238 8 0 chr11 77931439 77931565 -43912291 - B1F2 SINE Alu 0 149 23 1 1179 746 223 99 45 chr11 77931921 77932123 -43911733 - B3 SINE B2 -3 213 1 1 1179 667 185 96 0 chr11 77932296 77932431 -43911425 - B1F2 SINE Alu 0 149 2 1 1179 274 302 0 0 chr11 77932433 77932496 -43911360 - B4A SINE B4 -228 64 2 1 1179 311 304 104 42 chr11 77932496 77932640 -43911216 - ID_B1 SINE B4 -67 157 5 1 1179 411 147 0 0 chr11 77933272 77933340 -43910516 - B1_Mus1 SINE Alu -43 105 38 1 1179 21 0 0 0 chr11 77933376 77933397 -43910459 + AT_rich Low_complexity Low_complexity 1 21 0 1 1179 314 217 175 58 chr11 77933399 77933536 -43910320 - RSINE1 SINE B4 -10 155 3 1 1179 1513 183 65 38 chr11 77933785 77934182 -43909674 - RMER10A LTR ERVL -32 410 3 1 1179 936 158 220 0 chr11 77934359 77934536 -43909320 + B3 SINE B2 1 216 0 1 1179 259 236 139 0 chr11 77934598 77934670 -43909186 + PB1D10 SINE Alu 16 97 -20 1 1179 1050 208 10 5 chr11 77935123 77935331 -43908525 - B3 SINE B2 -7 209 1 1 1179 189 0 0 0 chr11 77935665 77935686 -43908170 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1179 1135 82 0 7 chr11 77935686 77935834 -43908022 - B1_Mus2 SINE Alu 0 147 1 1 1179 323 245 40 50 chr11 77935983 77936082 -43907774 - PB1D7 SINE Alu -7 113 16 1 1179 282 320 0 0 chr11 77936216 77936294 -43907562 + ID4 SINE ID 6 83 0 1 1179 243 0 0 0 chr11 77936572 77936599 -43907257 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1179 390 292 92 0 chr11 77936650 77936770 -43907086 - B3 SINE B2 -5 211 81 1 1179 399 227 41 0 chr11 77936770 77936867 -43906989 - B1_Mur1 SINE Alu -6 143 43 1 1179 708 182 48 14 chr11 77937015 77937160 -43906696 - RLTR18B LTR ERVK -77 435 286 1 1179 841 135 7 0 chr11 77937160 77937301 -43906555 + B1_Mus2 SINE Alu 6 147 0 1 1179 1255 160 124 18 chr11 77937304 77937578 -43906278 - RLTR18B LTR ERVK -209 303 1 1 1179 569 174 66 29 chr11 77937676 77937812 -43906044 - B1_Mur2 SINE Alu 0 149 9 1 1179 189 333 0 15 chr11 77937876 77937943 -43905913 + L2b LINE L2 3293 3358 -17 1 1179 1184 55 0 20 chr11 77938031 77938179 -43905677 - B1_Mus2 SINE Alu -1 146 2 1 1179 543 107 0 0 chr11 77938301 77938385 -43905471 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1179 612 61 0 0 chr11 77938873 77938955 -43904901 + B1_Mus2 SINE Alu 57 138 -9 1 1179 240 59 0 0 chr11 77938955 77938989 -43904867 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1179 470 274 0 0 chr11 77939062 77939168 -43904688 - PB1D10 SINE Alu -10 107 2 1 1179 355 221 268 14 chr11 77939759 77939897 -43903959 - Lx8 LINE L1 -1 7472 7300 1 1179 1974 258 161 32 chr11 77939912 77940690 -43903166 - Lx8 LINE L1 -334 7139 6262 1 1179 1466 64 27 0 chr11 77940866 77941054 -43902802 - B2_Mm1a SINE B2 0 193 1 1 1179 473 163 0 0 chr11 77941057 77941143 -43902713 - B1_Mus2 SINE Alu 0 147 62 1 1179 298 355 9 0 chr11 77941165 77941272 -43902584 + PB1D7 SINE Alu 2 109 -11 1 1179 410 279 99 7 chr11 77941312 77941453 -43902403 + RSINE1 SINE B4 8 161 -4 1 1179 830 154 20 40 chr11 77941538 77941687 -43902169 + B1_Mur3 SINE Alu 2 147 -2 1 1179 266 336 28 21 chr11 77941725 77941868 -43901988 + B1F1 SINE Alu 1 144 -5 1 1179 841 108 23 0 chr11 77941877 77942006 -43901850 + B1_Mur3 SINE Alu 18 149 0 1 1179 229 346 0 0 chr11 77942016 77942068 -43901788 + tRNA-Thr-ACY tRNA tRNA 22 73 -4 1 1179 1026 198 14 42 chr11 77942098 77942314 -43901542 + B3 SINE B2 1 210 -6 1 1179 535 283 50 7 chr11 77942481 77942620 -43901236 + RSINE1 SINE B4 21 165 0 1 1179 705 213 109 34 chr11 77942671 77942846 -43901010 - B3A SINE B2 -6 192 5 1 1179 275 85 356 0 chr11 77943706 77943765 -43900091 - B2_Mm2 SINE B2 -115 80 1 1 1179 584 207 16 0 chr11 77943823 77943944 -43899912 - ID_B1 SINE B4 -14 210 88 1 1179 753 112 17 8 chr11 77943945 77944062 -43899794 + PB1D9 SINE Alu 1 118 -2 1 1179 265 313 88 41 chr11 77944062 77944103 -43899753 + YREP_Mm Unknown Unknown 312 359 -1453 1 1179 332 302 8 25 chr11 77944322 77944441 -43899415 - PB1D7 SINE Alu -3 117 1 1 1179 599 290 124 5 chr11 77944682 77944876 -43898980 + ID_B1 SINE B4 2 218 -6 1 1179 689 178 229 75 chr11 77944966 77945245 -43898611 - ORR1A4 LTR MaLR -7 322 1 1 1179 319 256 108 32 chr11 77945245 77945338 -43898518 + PB1D9 SINE Alu 15 114 -6 1 1179 753 197 0 26 chr11 77945449 77945600 -43898256 - B1_Mur4 SINE Alu 0 150 4 1 1179 263 175 53 0 chr11 77945612 77945669 -43898187 - B1F1 SINE Alu -7 142 83 1 1179 343 312 7 90 chr11 77946002 77946157 -43897699 - ID_B1 SINE B4 -10 214 73 1 1179 601 182 106 0 chr11 77946183 77946315 -43897541 - B1_Mur2 SINE Alu -2 147 2 1 1179 291 257 18 106 chr11 77946216 77946329 -43897527 - MT2B LTR ERVL -344 257 155 1 1179 298 281 33 11 chr11 77946435 77946453 -43897403 - B4 SINE B4 -108 184 93 1 1179 441 167 0 0 chr11 77946453 77946525 -43897331 - PB1D9 SINE Alu -41 79 8 1 1179 340 211 124 9 chr11 77946529 77946634 -43897222 - ID_B1 SINE B4 -22 202 90 1 1179 214 240 0 20 chr11 77946802 77946853 -43897003 + CT-rich Low_complexity Low_complexity 1 50 0 1 1179 547 224 25 5 chr11 77947147 77947283 -43896573 + B1_Mur1 SINE Alu 10 149 0 1 1179 399 262 103 0 chr11 77947304 77947411 -43896445 + RSINE1 SINE B4 18 135 -30 1 1179 396 0 0 0 chr11 77947423 77947467 -43896389 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1179 692 164 109 22 chr11 77947676 77947813 -43896043 + B1_Mur2 SINE Alu 1 149 0 1 1179 344 307 102 25 chr11 77947973 77948130 -43895726 - B4A SINE B4 -97 195 27 1 1179 460 248 181 0 chr11 77948219 77948352 -43895504 + B3 SINE B2 2 158 -58 1 1179 234 191 0 0 chr11 77948389 77948436 -43895420 + T-rich Low_complexity Low_complexity 2 48 0 1 1179 341 225 0 27 chr11 77948563 77948636 -43895220 - B1F1 SINE Alu -78 71 1 1 1179 550 168 19 0 chr11 77948689 77948796 -43895060 - MTD LTR MaLR -115 304 196 1 1179 201 108 0 0 chr11 77948797 77948834 -43895022 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 1 1179 1181 48 0 0 chr11 77948834 77948981 -43894875 - B1_Mus2 SINE Alu 0 147 1 1 1179 824 220 0 25 chr11 77948981 77949144 -43894712 - MTD LTR MaLR -210 209 51 1 1179 904 58 8 0 chr11 77949582 77949703 -43894153 + B2_Mm2 SINE B2 3 124 -71 1 1179 385 243 19 37 chr11 77949878 77949985 -43893871 - PB1D10 SINE Alu 0 117 13 1 1179 415 268 160 19 chr11 77950014 77950170 -43893686 + B3A SINE B2 5 182 -16 1 1179 182 91 30 0 chr11 77950171 77950204 -43893652 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1179 1465 52 16 0 chr11 77950281 77950472 -43893384 + B2_Mm2 SINE B2 2 195 0 1 1179 438 228 51 26 chr11 77950481 77950598 -43893258 + PB1D9 SINE Alu 1 120 0 1 1179 1557 21 10 10 chr11 77950738 77950930 -43892926 - B2_Mm1a SINE B2 0 193 2 1 1179 411 244 49 0 chr11 77951064 77951187 -43892669 - L1M2 LINE L1 -2469 3674 3546 1 1179 324 262 109 58 chr11 77951589 77951727 -43892129 + RSINE1 SINE B4 21 165 0 1 1179 1111 81 44 50 chr11 77951756 77951937 -43891919 + B2_Mm2 SINE B2 1 180 -15 1 1179 890 210 29 24 chr11 77951939 77952144 -43891712 - B3 SINE B2 -10 206 1 1 1179 749 31 0 0 chr11 77952298 77952394 -43891462 - B1_Mus2 SINE Alu -2 145 50 1 1179 520 271 25 0 chr11 77952507 77952625 -43891231 + B3A SINE B2 2 122 -76 1 1179 245 266 0 0 chr11 77953108 77953172 -43890684 + CT-rich Low_complexity Low_complexity 2 65 0 1 1179 415 301 57 0 chr11 77953187 77953310 -43890546 - RMER5 LTR ERV1 -9 525 396 1 1179 1143 63 0 0 chr11 77953408 77953551 -43890305 + B1_Mus1 SINE Alu 1 143 -5 1 1179 186 128 0 0 chr11 77953560 77953599 -43890257 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1179 245 147 125 56 chr11 77953736 77953808 -43890048 + PB1D10 SINE Alu 15 91 -29 1 1179 723 265 120 11 chr11 77954341 77954608 -43889248 + RMER5 LTR ERV1 70 365 -169 1 1179 211 293 12 35 chr11 77954760 77954845 -43889011 + ID_B1 SINE B4 78 160 -64 1 1179 375 220 105 47 chr11 77954769 77954962 -43888894 + PB1D9 SINE Alu 6 145 -4 1 1179 775 157 37 0 chr11 77955680 77955814 -43888042 + B1_Mus2 SINE Alu 2 140 -7 1 1179 349 231 96 32 chr11 77955887 77955981 -43887875 + PB1D10 SINE Alu 17 116 -1 1 1179 1578 31 0 0 chr11 77956266 77956459 -43887397 - B2_Mm1a SINE B2 0 193 1 1 1179 579 314 39 19 chr11 77957620 77957828 -43886028 - MER58A DNA MER1_type -5 219 8 1 1179 368 257 0 37 chr11 77957864 77957973 -43885883 + PB1D10 SINE Alu 5 109 -8 1 1179 329 212 118 0 chr11 77957986 77958071 -43885785 + PB1D9 SINE Alu 26 120 0 1 1179 487 239 13 101 chr11 77958093 77958242 -43885614 + B1_Mur1 SINE Alu 1 136 -13 1 1179 276 30 0 0 chr11 77958250 77958283 -43885573 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1179 782 171 14 28 chr11 77958289 77958433 -43885423 + B1_Mus1 SINE Alu 1 142 -6 1 1179 692 230 165 5 chr11 77958463 77958651 -43885205 + ID_B1 SINE B4 1 218 -6 1 1179 742 244 67 5 chr11 77958655 77958849 -43885007 + B3 SINE B2 1 206 -10 1 1179 516 235 0 25 chr11 77959260 77959378 -43884478 + PB1D10 SINE Alu 2 116 -1 1 1179 220 246 174 0 chr11 77959728 77959797 -43884059 - PB1D10 SINE Alu -36 81 1 1 1179 239 247 89 11 chr11 77959814 77959904 -43883952 - B3 SINE B2 -28 188 92 1 1179 358 259 26 25 chr11 77959968 77960092 -43883764 - PB1 SINE Alu -1 116 2 1 1179 1156 55 0 0 chr11 77961005 77961150 -43882706 + B1_Mus2 SINE Alu 1 145 -2 1 1179 189 0 0 0 chr11 77961150 77961171 -43882685 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1179 264 324 72 0 chr11 77961179 77961290 -43882566 + PB1D9 SINE Alu 1 119 -1 1 1179 275 330 126 0 chr11 77961295 77961398 -43882458 + PB1D10 SINE Alu 1 116 -1 1 1179 480 218 27 9 chr11 77962116 77962227 -43881629 - PB1D7 SINE Alu -6 114 2 1 1179 248 140 40 0 chr11 77962267 77962317 -43881539 + CT-rich Low_complexity Low_complexity 2 53 0 1 1179 408 212 0 12 chr11 77962345 77962431 -43881425 - PB1D10 SINE Alu 0 117 33 1 1179 358 20 19 19 chr11 77962435 77962487 -43881369 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 1179 297 274 0 0 chr11 77963397 77963470 -43880386 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1179 569 172 167 30 chr11 77963501 77963633 -43880223 + B1_Mur4 SINE Alu 1 150 0 1 1179 606 302 40 6 chr11 77963634 77963807 -43880049 - ID_B1 SINE B4 -15 209 31 1 1179 422 282 61 34 chr11 77964054 77964201 -43879655 + RSINE1 SINE B4 15 165 0 1 1179 213 39 0 0 chr11 77964264 77964290 -43879566 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 1 1179 953 72 0 41 chr11 77964293 77964438 -43879418 - B1_Mus1 SINE Alu 0 148 10 1 1179 707 237 41 12 chr11 77964749 77964920 -43878936 + B3 SINE B2 1 176 -40 1 1179 601 226 28 35 chr11 77964921 77965063 -43878793 - B1_Mur1 SINE Alu 0 149 9 1 1179 1386 67 0 6 chr11 77965202 77965383 -43878473 + B2_Mm2 SINE B2 2 181 -14 1 1179 305 100 0 20 chr11 77967145 77967196 -43876660 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1179 23 33 0 0 chr11 77970794 77970824 -43873032 + AT_rich Low_complexity Low_complexity 1 30 0 1 1179 486 227 82 0 chr11 77972533 77972643 -43871213 + B4A SINE B4 168 286 -6 1 1179 225 0 0 0 chr11 77973280 77973305 -43870551 + (TGG)n Simple_repeat Simple_repeat 1 25 0 1 1179 1187 34 0 0 chr11 77975234 77975380 -43868476 - B1_Mm SINE Alu 0 147 2 1 1179 217 308 0 55 chr11 77977435 77977545 -43866311 + G-rich Low_complexity Low_complexity 3 106 0 1 1179 191 297 150 15 chr11 77978253 77978374 -43865482 + MIR SINE MIR 46 181 -87 1 1179 201 74 0 0 chr11 77981907 77981934 -43861922 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1179 572 184 8 50 chr11 77983153 77983273 -43860583 + PB1D9 SINE Alu 1 115 -5 1 1179 230 288 34 0 chr11 77983300 77983359 -43860497 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 1 1179 827 93 65 0 chr11 77983478 77983617 -43860239 - B1_Mus1 SINE Alu 0 148 1 1 1179 181 245 0 39 chr11 77983636 77983687 -43860169 + MIRm SINE MIR 106 154 -122 1 1179 216 216 0 38 chr11 77983654 77983707 -43860149 + MIRc SINE MIR 119 169 -99 1 1179 641 147 188 12 chr11 77984933 77985098 -43858758 + B2_Mm2 SINE B2 1 194 -1 1 1179 962 79 0 21 chr11 77985098 77985240 -43858616 + B1_Mm SINE Alu 9 147 0 1 1179 348 268 73 0 chr11 77986802 77986925 -43856931 + B3A SINE B2 67 198 0 1 1179 716 160 130 0 chr11 77986929 77987060 -43856796 + B3 SINE B2 2 149 -67 1 1179 1195 103 16 5 chr11 77987096 77987281 -43856575 + B2_Mm2 SINE B2 1 187 -8 1 1179 543 213 260 0 chr11 77987414 77987583 -43856273 - B3 SINE B2 -3 213 1 1 147 703 174 92 18 chr11 77987819 77987983 -43855873 + B3 SINE B2 1 176 -40 1 1180 365 246 26 118 chr11 77988182 77988334 -43855522 - ID_B1 SINE B4 0 224 87 1 1180 202 306 187 38 chr11 77988414 77988656 -43855200 + L2b LINE L2 2840 3124 -302 1 1180 904 145 0 7 chr11 77988681 77988827 -43855029 - B1_Mus2 SINE Alu -2 145 1 1 1180 227 297 122 0 chr11 77988980 77989054 -43854802 - ID4_ SINE ID 0 83 1 1 1180 1223 20 0 0 chr11 77989165 77989311 -43854545 + B1_Mus2 SINE Alu 2 147 0 1 1180 252 0 0 0 chr11 77989311 77989339 -43854517 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1180 1029 114 107 11 chr11 77989345 77989522 -43854334 - B2_Mm2 SINE B2 0 195 2 1 1180 480 239 44 0 chr11 77989529 77989642 -43854214 - PB1D7 SINE Alu 0 120 3 1 1180 207 49 48 24 chr11 77992130 77992172 -43851684 + (CGGGGG)n Simple_repeat Simple_repeat 3 45 0 1 1180 213 253 114 0 chr11 77995533 77995612 -43848244 - ID_B1 SINE B4 -54 170 83 1 1180 1226 117 0 21 chr11 77995852 77996044 -43847812 + B2_Mm2 SINE B2 3 190 -5 1 1180 186 43 0 0 chr11 77997256 77997279 -43846577 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1180 305 71 54 0 chr11 77997326 77997382 -43846474 - B2_Mm2 SINE B2 0 195 137 1 1180 906 87 21 42 chr11 77997443 77997587 -43846269 - B1_Mus1 SINE Alu -6 142 2 1 1180 738 160 45 26 chr11 77997646 77997800 -43846056 - B2_Mm1a SINE B2 -14 179 23 1 1180 233 98 0 24 chr11 77997812 77997854 -43846002 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1180 691 190 0 26 chr11 77997856 77998007 -43845849 - B1_Mur4 SINE Alu -2 148 2 1 1180 236 53 26 0 chr11 77998020 77998058 -43845798 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1180 1097 58 0 0 chr11 77998058 77998196 -43845660 - B1_Mm SINE Alu -9 138 1 1 1180 1523 37 5 0 chr11 77998429 77998620 -43845236 + B2_Mm1t SINE B2 2 193 0 1 1180 725 69 0 10 chr11 77998736 77998839 -43845017 + B1_Mus2 SINE Alu 46 147 0 1 1180 476 177 15 42 chr11 77998868 77998988 -43844868 + B1_Mur2 SINE Alu 1 148 -1 1 1180 1117 75 0 0 chr11 77999007 77999154 -43844702 + B1_Mm SINE Alu 1 147 0 1 1180 1041 83 7 7 chr11 77999192 77999338 -43844518 - B1_Mus1 SINE Alu -2 146 1 1 1180 679 223 14 0 chr11 77999362 77999501 -43844355 + B1_Mur1 SINE Alu 1 141 -8 1 1180 461 17 17 0 chr11 77999501 77999559 -43844297 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1 1180 518 228 65 0 chr11 77999573 77999696 -43844160 + B1F1 SINE Alu 18 148 -1 1 1180 762 93 0 0 chr11 77999893 78000000 -43843856 + B2_Mm2 SINE B2 1 107 -88 1 1180 484 15 59 0 chr11 78000005 78000073 -43843783 + B2_Mm1a SINE B2 118 189 -4 1 1180 935 111 0 27 chr11 78000077 78000225 -43843631 + B1_Mus1 SINE Alu 5 148 0 2 1180 389 290 30 152 chr11 78000278 78000518 -43843338 - B3A SINE B2 -14 202 3 3 1180 552 181 79 64 chr11 78000552 78000724 -43843132 - B3 SINE B2 -2 214 20 4 1180 1195 91 23 0 chr11 78000723 78000898 -43842958 - B2_Mm1a SINE B2 -4 189 11 5 1180 252 86 0 0 chr11 78000929 78000964 -43842892 + (TCC)n Simple_repeat Simple_repeat 2 36 0 6 1180 506 240 48 0 chr11 78000968 78001072 -43842784 - B1_Mur1 SINE Alu -7 142 34 7 1180 1258 21 0 14 chr11 78001105 78001252 -43842604 + B1_Mm SINE Alu 3 147 0 8 1180 180 0 0 0 chr11 78001252 78001272 -43842584 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1180 304 305 115 10 chr11 78001272 78001368 -43842488 - PB1D7 SINE Alu -13 107 2 1 1180 1259 54 0 0 chr11 78004299 78004446 -43839410 + B1_Mus2 SINE Alu 1 147 0 1 1180 243 88 0 0 chr11 78004447 78004481 -43839375 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1 1180 1624 47 16 0 chr11 78005692 78005884 -43837972 - B2_Mm2 SINE B2 0 195 1 1 1180 308 261 0 0 chr11 78006132 78006194 -43837662 - ID_B1 SINE B4 -3 221 160 1 1180 1777 188 251 22 chr11 78006194 78006645 -43837211 - RMER15 LTR ERVL 0 575 22 1 1180 524 261 84 7 chr11 78006793 78006947 -43836909 - RMER15-int LTR ERVL -639 4360 4195 1 1180 422 189 112 86 chr11 78006955 78007071 -43836785 - PB1D9 SINE Alu -1 119 1 1 1180 454 221 213 0 chr11 78007093 78007215 -43836641 - B1_Mur2 SINE Alu 0 149 2 1 1180 1080 48 7 7 chr11 78007469 78007616 -43836240 - B1_Mus1 SINE Alu 0 148 2 1 1180 960 124 0 0 chr11 78008777 78008955 -43834901 + (TC)n Simple_repeat Simple_repeat 2 179 0 1 1180 216 0 0 0 chr11 78008969 78008993 -43834863 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1180 1130 70 0 7 chr11 78008999 78009143 -43834713 - B1_Mus1 SINE Alu -5 143 1 2 1180 246 287 128 10 chr11 78009821 78009923 -43833933 + MIRc SINE MIR 22 135 -133 2 1180 247 300 0 14 chr11 78010035 78010106 -43833750 + ID4 SINE ID 1 70 -13 2 1180 464 310 20 20 chr11 78010124 78010154 -43833702 + ID_B1 SINE B4 66 217 -3 2 1180 587 203 56 16 chr11 78010154 78010279 -43833577 + B1F SINE Alu 13 142 -7 2 1180 322 221 221 0 chr11 78010509 78010586 -43833270 - PB1D10 SINE Alu -16 101 8 2 1180 2225 144 44 18 chr11 78010866 78011254 -43832602 - RMER10B LTR ERVL 0 398 1 2 1180 393 176 134 10 chr11 78011323 78011424 -43832432 + PB1D9 SINE Alu 5 119 -1 2 1180 1182 68 0 7 chr11 78011538 78011687 -43832169 + B1_Mus1 SINE Alu 1 148 0 2 1180 269 25 75 0 chr11 78011693 78011733 -43832123 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 3 1180 670 107 82 96 chr11 78011742 78011877 -43831979 + B1_Mus1 SINE Alu 1 133 -15 3 1180 899 112 0 7 chr11 78011878 78012022 -43831834 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 3 1180 1002 92 21 0 chr11 78012022 78012164 -43831692 - B2_Mm2 SINE B2 -15 180 36 3 1180 1200 73 0 0 chr11 78012164 78012328 -43831528 + (GA)n Simple_repeat Simple_repeat 2 165 0 3 1180 2566 71 6 21 chr11 78012353 78012684 -43831172 + ORR1A2 LTR MaLR 1 326 -1 3 1180 236 96 231 0 chr11 78012745 78012797 -43831059 + B2_Mm2 SINE B2 125 188 -7 3 1180 1483 61 0 6 chr11 78012798 78012980 -43830876 - B2_Mm2 SINE B2 -14 181 1 3 1180 711 0 0 0 chr11 78012991 78013070 -43830786 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3 1180 664 12 0 0 chr11 78013097 78013180 -43830676 - L1Md_T LINE L1 0 6582 6500 3 1180 1166 74 0 6 chr11 78013180 78013343 -43830513 + (TTC)n Simple_repeat Simple_repeat 2 163 0 4 1180 1031 113 0 14 chr11 78013359 78013503 -43830353 + B1_Mm SINE Alu 1 142 -5 4 1180 778 237 17 94 chr11 78013796 78013935 -43829921 + B3 SINE B2 1 121 -95 4 1180 1150 69 14 0 chr11 78013935 78014079 -43829777 - B1_Mus2 SINE Alu 0 147 2 4 1180 778 237 17 94 chr11 78014079 78014172 -43829684 + B3 SINE B2 122 215 -1 4 1180 945 93 0 0 chr11 78014343 78014472 -43829384 - B1_Mus1 SINE Alu -13 135 7 4 1180 479 239 40 86 chr11 78014472 78014494 -43829362 - B4 SINE B4 -79 213 70 4 1180 268 275 14 0 chr11 78014532 78014601 -43829255 + tRNA-Ala-GCA tRNA tRNA 4 73 -2 4 1180 1114 45 37 0 chr11 78014780 78014914 -43828942 - B1_Mus1 SINE Alu -9 139 1 4 1180 1200 75 0 0 chr11 78014932 78015079 -43828777 - B1_Mus1 SINE Alu 0 148 2 4 1180 409 207 49 0 chr11 78015503 78015585 -43828271 + RSINE1 SINE B4 2 87 -78 4 1180 336 310 132 22 chr11 78015615 78015782 -43828074 - MIRb SINE MIR -4 264 67 5 1180 1405 46 63 0 chr11 78015782 78015956 -43827900 + B2_Mm2 SINE B2 1 185 -10 5 1180 336 307 118 24 chr11 78015956 78016017 -43827839 - MIRb SINE MIR -202 66 8 5 1180 216 0 0 0 chr11 78016031 78016055 -43827801 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1180 839 102 141 0 chr11 78016560 78016688 -43827168 - B1_Mus2 SINE Alu 0 147 2 5 1180 346 200 91 26 chr11 78016709 78016786 -43827070 - RSINE1 SINE B4 -4 161 80 5 1180 907 71 62 16 chr11 78017226 78017354 -43826502 - B1_Mus2 SINE Alu -13 134 1 5 1180 221 0 0 33 chr11 78017784 78017814 -43826042 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1180 1112 52 0 7 chr11 78017814 78017950 -43825906 - B1_Mus1 SINE Alu -9 139 5 5 1180 349 262 36 111 chr11 78019937 78020072 -43823784 + B3A SINE B2 37 169 -29 5 1180 850 146 8 0 chr11 78020072 78020202 -43823654 + B1_Mus1 SINE Alu 1 131 -17 5 1180 230 0 33 0 chr11 78020209 78020239 -43823617 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 6 1180 360 246 55 0 chr11 78020257 78020356 -43823500 + PB1D7 SINE Alu 12 119 -1 6 1180 207 0 0 0 chr11 78020589 78020612 -43823244 + (CAGG)n Simple_repeat Simple_repeat 2 24 0 6 1180 910 105 83 0 chr11 78022013 78022146 -43821710 - B1_Mur4 SINE Alu -6 144 1 6 1180 2182 162 80 28 chr11 78023075 78023474 -43820382 + MTC LTR MaLR 1 420 -1 6 1180 232 305 50 50 chr11 78023821 78023924 -43819932 + MIR SINE MIR 6 108 -100 6 1180 288 0 0 0 chr11 78024381 78024413 -43819443 + (CAGGT)n Simple_repeat Simple_repeat 1 32 0 6 1180 1233 48 7 0 chr11 78024804 78024950 -43818906 - B1_Mus2 SINE Alu 0 147 1 6 1180 381 237 50 30 chr11 78024973 78025073 -43818783 + RMER30 DNA MER1_type 1 102 -100 6 1180 363 44 0 0 chr11 78025073 78025118 -43818738 + (GAAAA)n Simple_repeat Simple_repeat 5 49 0 6 1180 354 291 80 22 chr11 78026965 78027102 -43816754 - MIR3 SINE MIR -6 202 58 7 1180 857 151 7 41 chr11 78027342 78027487 -43816369 + B1_Mur4 SINE Alu 2 141 -9 7 1180 212 77 26 0 chr11 78027487 78027526 -43816330 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 7 1180 1409 235 81 12 chr11 78027570 78027893 -43815963 + ORR1D1 LTR MaLR 1 345 -29 7 1180 670 254 28 7 chr11 78027898 78028041 -43815815 + ID_B1 SINE B4 50 195 -29 7 1180 1112 45 0 8 chr11 78028118 78028251 -43815605 - B1_Mm SINE Alu -15 132 1 7 1180 1306 72 0 0 chr11 78028259 78028426 -43815430 - B2_Mm2 SINE B2 -28 167 1 7 1180 721 190 11 109 chr11 78028430 78028613 -43815243 - B2_Mm2 SINE B2 -4 191 27 7 1180 27 0 0 0 chr11 78028613 78028640 -43815216 + AT_rich Low_complexity Low_complexity 1 27 0 7 1180 229 238 0 0 chr11 78028738 78028780 -43815076 - B3 SINE B2 -174 42 1 7 1180 264 276 120 91 chr11 78028780 78028829 -43815027 + MT2B LTR ERVL 96 206 -395 8 1180 325 313 36 0 chr11 78028829 78028848 -43815008 + B4 SINE B4 64 85 -207 8 1180 421 271 164 33 chr11 78028848 78028970 -43814886 + B1_Mur2 SINE Alu 1 138 -11 8 1180 264 276 120 91 chr11 78028912 78028933 -43814923 + MT2B LTR ERVL 207 253 -348 8 1180 372 94 0 0 chr11 78029093 78029146 -43814710 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1180 1164 106 94 0 chr11 78029889 78030059 -43813797 + B2_Mm1t SINE B2 3 188 -5 8 1180 642 241 120 21 chr11 78030101 78030292 -43813564 + B3 SINE B2 1 210 -6 8 1180 302 0 26 0 chr11 78030303 78030341 -43813515 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1180 225 173 173 0 chr11 78030366 78030418 -43813438 + RSINE1 SINE B4 72 132 -33 8 1180 661 158 5 215 chr11 78030703 78030780 -43813076 + B1_Mur1 SINE Alu 1 66 -83 8 1180 434 105 0 0 chr11 78030780 78030856 -43813000 + L1Md_F2 LINE L1 6507 6582 0 8 1180 661 158 5 215 chr11 78030856 78030964 -43812892 + B1_Mur1 SINE Alu 67 147 -2 8 1180 268 299 13 0 chr11 78031705 78031782 -43812074 - BC1_Mm scRNA scRNA -61 91 14 9 1180 1431 229 67 35 chr11 78031967 78032369 -43811487 + MTD LTR MaLR 5 419 0 9 1180 514 202 100 8 chr11 78032420 78032550 -43811306 - B1_Mus2 SINE Alu -1 146 5 9 1180 332 202 122 92 chr11 78032956 78033054 -43810802 - PB1 SINE Alu -26 101 1 9 1180 676 279 31 52 chr11 78033622 78033951 -43809905 + L1ME4a LINE L1 5725 6049 -75 9 1180 410 285 99 8 chr11 78034929 78035060 -43808796 + ID_B1 SINE B4 82 224 0 9 1180 819 96 152 0 chr11 78035065 78035190 -43808666 + B1_Mur4 SINE Alu 3 146 -4 9 1180 237 139 0 0 chr11 78035408 78035451 -43808405 + (CATAG)n Simple_repeat Simple_repeat 4 46 0 9 1180 818 166 57 7 chr11 78036782 78036922 -43806934 + B1_Mur3 SINE Alu 3 149 0 9 1180 409 102 0 0 chr11 78037036 78037095 -43806761 + B1_Mur4 SINE Alu 86 144 -6 9 1180 444 37 0 0 chr11 78037097 78037151 -43806705 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 1 1180 664 141 10 0 chr11 78037450 78037549 -43806307 + PB1D9 SINE Alu 21 120 0 1 1180 412 179 10 125 chr11 78037622 78037718 -43806138 + B1_Mus1 SINE Alu 6 90 -58 1 1180 278 274 160 0 chr11 78037626 78037732 -43806124 + ID_B1 SINE B4 90 212 -12 1 1180 360 0 0 0 chr11 78038417 78038457 -43805399 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1180 255 61 0 0 chr11 78038457 78038489 -43805367 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1180 315 0 0 0 chr11 78038642 78038677 -43805179 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1180 317 230 13 26 chr11 78038695 78038771 -43805085 + ID4_ SINE ID 2 76 -7 1 1180 244 327 90 63 chr11 78040696 78040807 -43803049 + PB1D7 SINE Alu 2 118 -2 1 1180 1206 68 0 0 chr11 78040808 78040956 -43802900 + B1_Mus1 SINE Alu 1 148 0 1 1180 276 167 0 0 chr11 78040959 78041031 -43802825 + A-rich Low_complexity Low_complexity 1 72 0 1 1180 352 342 17 9 chr11 78041195 78041310 -43802546 + PB1D10 SINE Alu 1 116 -1 1 1180 229 100 50 0 chr11 78041530 78041570 -43802286 + B2_Mm1t SINE B2 1 42 -151 1 1180 224 333 0 0 chr11 78041591 78041648 -43802208 - B4A SINE B4 -151 141 85 1 1180 326 232 155 24 chr11 78041754 78041838 -43802018 - PB1D10 SINE Alu -25 95 1 1 1180 618 169 138 0 chr11 78041853 78041983 -43801873 + B1F2 SINE Alu 1 148 -1 1 1180 198 0 0 0 chr11 78043216 78043238 -43800618 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1180 1165 83 0 0 chr11 78043269 78043425 -43800431 - B2_Mm2 SINE B2 -38 157 2 1 1180 1029 232 11 0 chr11 78043442 78043632 -43800224 - B3 SINE B2 -6 210 19 1 1180 823 202 197 0 chr11 78043923 78044106 -43799750 + ID_B1 SINE B4 2 220 -4 1 1180 365 252 116 9 chr11 78044157 78044269 -43799587 + B1F SINE Alu 24 147 -2 1 1180 267 279 93 67 chr11 78044269 78044307 -43799549 + B4A SINE B4 109 262 -30 1 1180 882 200 0 0 chr11 78047231 78047376 -43796480 + B1_Mur4 SINE Alu 1 145 -5 1 1180 249 224 20 0 chr11 78047493 78047542 -43796314 + ID4 SINE ID 5 54 -29 1 1180 467 89 101 0 chr11 78047600 78047679 -43796177 - B2_Mm2 SINE B2 0 195 109 1 1180 1075 43 65 7 chr11 78047679 78047818 -43796038 + B1_Mus2 SINE Alu 1 147 0 1 1180 600 134 0 0 chr11 78047820 78047917 -43795939 + (GAAA)n Simple_repeat Simple_repeat 3 99 0 1 1180 926 73 0 8 chr11 78047917 78048041 -43795815 - B2_Mm2 SINE B2 -72 123 1 1 1180 586 187 44 9 chr11 78048100 78048213 -43795643 - PB1D7 SINE Alu -3 117 1 1 1180 519 237 53 0 chr11 78048445 78048559 -43795297 + B1_Mur4 SINE Alu 25 144 -6 1 1180 930 192 82 39 chr11 78048571 78048777 -43795079 + B3 SINE B2 1 215 -1 1 1180 453 89 29 15 chr11 78048840 78048908 -43794948 - B2_Mm2 SINE B2 -31 164 96 1 1180 561 256 89 158 chr11 78049027 78049319 -43794537 - MTD LTR MaLR -15 404 133 1 1180 1137 71 13 0 chr11 78049318 78049472 -43794384 + B2_Mm2 SINE B2 39 194 -1 1 1180 373 333 25 62 chr11 78049583 78049743 -43794113 + RSINE1 SINE B4 12 165 0 1 1180 341 241 71 44 chr11 78049773 78049886 -43793970 + RSINE1 SINE B4 5 120 -45 1 1180 551 106 385 0 chr11 78049909 78050013 -43793843 + B1_Mus1 SINE Alu 5 148 0 1 1180 497 258 15 45 chr11 78050032 78050166 -43793690 - ID_B1 SINE B4 0 224 95 1 1180 23 0 0 0 chr11 78050214 78050237 -43793619 + AT_rich Low_complexity Low_complexity 1 23 0 1 1180 832 128 200 44 chr11 78050243 78050423 -43793433 + B3 SINE B2 9 216 0 1 1180 385 244 283 12 chr11 78050432 78050598 -43793258 - B3 SINE B2 -4 212 2 1 1180 344 320 47 51 chr11 78050801 78051024 -43792832 + B4 SINE B4 75 280 -12 1 1180 207 0 0 0 chr11 78051027 78051050 -43792806 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1180 699 112 0 0 chr11 78051050 78051157 -43792699 + (CA)n Simple_repeat Simple_repeat 2 108 0 1 1180 270 0 0 0 chr11 78051637 78051667 -43792189 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1180 300 296 80 43 chr11 78051699 78051837 -43792019 - RSINE1 SINE B4 0 165 23 1 1180 307 238 152 0 chr11 78052086 78052191 -43791665 + Charlie1b DNA MER1_type 135 255 -268 1 1180 793 227 91 5 chr11 78052197 78052396 -43791460 - B3 SINE B2 0 216 1 1 1180 648 159 112 132 chr11 78052411 78052524 -43791332 - B1_Mur4 SINE Alu 0 150 21 1 1180 1664 31 0 15 chr11 78052524 78052720 -43791136 + B2_Mm1t SINE B2 1 193 0 1 1180 648 159 112 132 chr11 78052720 78052758 -43791098 - B1_Mur4 SINE Alu -130 20 2 1 1180 1337 69 11 6 chr11 78052951 78053107 -43790749 + B2_Mm2 SINE B2 2 159 -36 1 1180 246 81 0 0 chr11 78053107 78053144 -43790712 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1 1180 1337 69 11 6 chr11 78053144 78053161 -43790695 + B2_Mm2 SINE B2 160 176 -19 1 1180 431 246 138 0 chr11 78053193 78053323 -43790533 + B1_Mur2 SINE Alu 2 149 0 1 1180 261 259 0 0 chr11 78053323 78053381 -43790475 + GA-rich Low_complexity Low_complexity 3 60 0 1 1180 431 212 179 41 chr11 78053402 78053525 -43790331 - B1F SINE Alu -6 143 4 1 1180 1115 106 0 0 chr11 78054904 78055046 -43788810 - B1_Mus1 SINE Alu -5 143 2 1 1180 1032 37 90 0 chr11 78055068 78055202 -43788654 + B1_Mus2 SINE Alu 2 147 0 1 1180 228 35 0 0 chr11 78055203 78055232 -43788624 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1180 326 319 82 20 chr11 78055249 78055396 -43788460 + RSINE1 SINE B4 2 157 -8 1 1180 284 244 81 11 chr11 78055425 78055512 -43788344 + PB1D7 SINE Alu 19 111 -9 1 1180 331 308 65 65 chr11 78055542 78055588 -43788268 + B4 SINE B4 49 187 -105 1 1180 544 151 32 0 chr11 78055588 78055681 -43788175 + B1_Mus2 SINE Alu 1 96 -51 1 1180 1185 103 21 26 chr11 78056039 78056228 -43787628 + B2_Mm2 SINE B2 8 195 0 1 1180 255 286 11 35 chr11 78056248 78056335 -43787521 + PB1D10 SINE Alu 33 117 0 1 1180 451 329 117 6 chr11 78056389 78056560 -43787296 + 7SLRNA srpRNA srpRNA 3 192 -122 1 1180 210 331 73 44 chr11 78056738 78056874 -43786982 - L2 LINE L2 -1367 2052 1913 1 1180 325 302 11 11 chr11 78056939 78057026 -43786830 + PB1D10 SINE Alu 9 95 -22 1 1180 189 0 0 0 chr11 78057101 78057122 -43786734 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1180 405 223 152 19 chr11 78057231 78057336 -43786520 + PB1D9 SINE Alu 2 120 0 1 1180 1218 61 0 7 chr11 78057460 78057609 -43786247 + B1_Mus1 SINE Alu 1 148 0 1 1180 186 43 0 0 chr11 78057629 78057652 -43786204 + (CTAAT)n Simple_repeat Simple_repeat 3 25 0 1 1180 272 257 67 13 chr11 78057744 78057819 -43786037 - PB1D10 SINE Alu -7 110 32 1 1180 391 154 73 52 chr11 78058008 78058104 -43785752 + Lx8 LINE L1 7153 7250 -223 1 1180 249 33 0 0 chr11 78058168 78058198 -43785658 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1180 186 209 0 0 chr11 78059156 78059199 -43784657 + (CCG)n Simple_repeat Simple_repeat 3 45 0 1 1180 215 315 143 71 chr11 78059897 78060051 -43783805 - MIR SINE MIR -96 166 2 1 1180 301 319 11 0 chr11 78060244 78060335 -43783521 - L2a LINE L2 -2 3424 3333 1 1180 471 254 36 0 chr11 78060348 78060458 -43783398 + PB1D10 SINE Alu 4 117 0 1 1180 1238 34 0 7 chr11 78060758 78060906 -43782950 - B1_Mus1 SINE Alu 0 148 2 1 1180 512 196 68 55 chr11 78060969 78061115 -43782741 + B1_Mur1 SINE Alu 2 149 0 1 1180 1031 133 0 20 chr11 78061127 78061280 -43782576 + B1_Mur4 SINE Alu 1 150 0 1 1180 948 295 67 58 chr11 78061351 78061786 -43782070 + RLTR12B LTR ERVK 47 485 -43 1 1180 1131 62 14 0 chr11 78061918 78062062 -43781794 + B1_Mus1 SINE Alu 2 147 -1 1 1180 250 328 0 0 chr11 78062179 78062237 -43781619 - B1_Mur1 SINE Alu 0 149 92 1 1180 251 333 110 9 chr11 78062233 78062342 -43781514 - RSINE1 SINE B4 -43 122 3 1 1180 357 93 0 0 chr11 78062400 78062454 -43781402 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1180 335 169 26 66 chr11 78062454 78062530 -43781326 - PB1D9 SINE Alu -5 115 43 1 1180 298 258 73 110 chr11 78062532 78062641 -43781215 - B4 SINE B4 -187 105 1 1 1180 620 295 21 16 chr11 78062641 78062826 -43781030 - B4 SINE B4 -65 227 42 1 1180 358 284 77 8 chr11 78062824 78062941 -43780915 - RSINE1 SINE B4 -38 127 3 1 1180 1334 87 60 0 chr11 78063226 78063409 -43780447 + B2_Mm2 SINE B2 2 195 0 1 1180 1450 63 5 10 chr11 78064144 78064337 -43779519 + B2_Mm2 SINE B2 3 194 -1 1 1180 1180 48 0 7 chr11 78065030 78065178 -43778678 + B1_Mm SINE Alu 1 147 0 1 1180 210 150 0 0 chr11 78065179 78065219 -43778637 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1180 880 215 82 5 chr11 78065247 78065443 -43778413 + B3 SINE B2 2 212 -4 1 1180 767 200 111 12 chr11 78065514 78065676 -43778180 + URR1B DNA MER1_type 1 178 -47 1 1180 734 266 23 9 chr11 78065697 78065913 -43777943 - ID_B1 SINE B4 -5 219 1 1 1180 356 338 65 0 chr11 78065936 78066075 -43777781 - B1F1 SINE Alu -1 148 1 1 1180 813 202 11 16 chr11 78066083 78066269 -43777587 - B3 SINE B2 -4 212 28 1 1180 549 204 170 18 chr11 78066305 78066360 -43777496 - B2_Mm2 SINE B2 0 195 141 1 1180 1398 90 11 0 chr11 78066360 78066548 -43777308 + B2_Mm2 SINE B2 1 190 -5 1 1180 549 204 170 18 chr11 78066548 78066657 -43777199 - B2_Mm2 SINE B2 -55 140 7 1 1180 400 212 120 96 chr11 78066873 78067040 -43776816 - RLTR13D3 LTR ERVK 0 1114 944 2 1180 259 191 0 0 chr11 78067283 78067325 -43776531 - B2_Mm2 SINE B2 -153 42 1 2 1180 45 45 0 0 chr11 78067357 78067423 -43776433 + AT_rich Low_complexity Low_complexity 1 66 0 2 1180 204 40 0 0 chr11 78067471 78067496 -43776360 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1180 1132 49 14 0 chr11 78067497 78067640 -43776216 - B1_Mus2 SINE Alu -1 146 2 2 1180 808 166 58 0 chr11 78067721 78067860 -43775996 + B1_Mur3 SINE Alu 1 147 -2 2 1180 475 256 56 42 chr11 78067943 78068086 -43775770 - ID_B1 SINE B4 -2 222 78 2 1180 1288 127 11 0 chr11 78068123 78068312 -43775544 - B2_Mm1t SINE B2 -1 192 2 2 1180 22 35 0 0 chr11 78068957 78068986 -43774870 + AT_rich Low_complexity Low_complexity 1 29 0 2 1180 225 0 0 0 chr11 78069065 78069090 -43774766 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 2 1180 744 46 14 2 chr11 78069090 78069197 -43774659 - B1_Mm SINE Alu 0 150 34 2 1180 1443 64 11 0 chr11 78069214 78069401 -43774455 - B2_Mm1t SINE B2 -3 190 2 2 1180 1148 81 118 22 chr11 78069401 78069579 -43774277 - B2_Mm2 SINE B2 0 195 1 2 1180 1212 41 7 0 chr11 78070029 78070174 -43773682 + B1_Mus2 SINE Alu 2 147 0 2 1180 183 80 0 0 chr11 78070174 78070199 -43773657 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1180 673 187 150 57 chr11 78070355 78070548 -43773308 - B3 SINE B2 -4 212 2 2 1180 475 208 75 0 chr11 78070591 78070697 -43773159 - B1_Mur1 SINE Alu -27 122 9 2 1180 428 214 199 17 chr11 78070720 78070872 -43772984 - B3 SINE B2 -19 176 1 2 1180 38 0 0 0 chr11 78070881 78070919 -43772937 + AT_rich Low_complexity Low_complexity 1 38 0 2 1180 1147 82 0 0 chr11 78070924 78071070 -43772786 - B1_Mus1 SINE Alu -2 146 1 2 1180 723 150 60 8 chr11 78071420 78071554 -43772302 + B1_Mur3 SINE Alu 7 147 -2 2 1180 1059 71 0 7 chr11 78071582 78071724 -43772132 + B1_Mus1 SINE Alu 8 148 0 2 1180 1005 140 71 22 chr11 78071987 78072170 -43771686 - B2_Mm2 SINE B2 -3 192 1 2 1180 410 259 0 0 chr11 78072214 78072299 -43771557 + PB1D10 SINE Alu 25 109 -8 2 1180 548 224 0 8 chr11 78072306 78072423 -43771433 + PB1D9 SINE Alu 5 120 0 2 1180 224 59 29 0 chr11 78072576 78072610 -43771246 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 1180 1159 75 0 0 chr11 78072610 78072756 -43771100 - B1_Mus2 SINE Alu 0 147 2 2 1180 1298 269 45 92 chr11 78072757 78073245 -43770611 + RLTR18 LTR ERVK 7 446 -170 2 1180 837 159 0 33 chr11 78073245 78073395 -43770461 + B1_Mus1 SINE Alu 3 147 -1 2 1180 1298 269 45 92 chr11 78073395 78073467 -43770389 + RLTR18 LTR ERVK 447 512 -104 2 1180 1400 40 74 0 chr11 78073467 78073642 -43770214 - B2_Mm1a SINE B2 -5 188 1 2 1180 514 281 0 119 chr11 78073642 78073737 -43770119 + RLTR18 LTR ERVK 416 507 -5 2 1180 326 276 53 0 chr11 78073888 78073964 -43769892 - RSINE1 SINE B4 -85 80 1 2 1180 902 79 151 0 chr11 78074396 78074522 -43769334 + B1_Mus2 SINE Alu 3 147 0 2 1180 1237 48 0 0 chr11 78074705 78074851 -43769005 - B1_Mm SINE Alu 0 147 2 2 1180 213 108 0 0 chr11 78075134 78075171 -43768685 + (TCGGG)n Simple_repeat Simple_repeat 3 39 0 2 1180 315 130 0 0 chr11 78075926 78075980 -43767876 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1180 231 36 0 0 chr11 78076348 78076376 -43767480 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 1180 243 125 0 0 chr11 78076470 78076510 -43767346 + (TTG)n Simple_repeat Simple_repeat 3 42 0 2 1180 387 320 0 10 chr11 78076585 78076686 -43767170 + PB1D10 SINE Alu 10 109 -8 2 1180 741 270 18 50 chr11 78077567 78077789 -43766067 - B3 SINE B2 -1 215 1 2 1180 510 233 6 151 chr11 78078284 78078402 -43765454 - B1_Mur2 SINE Alu 0 149 54 2 1180 1539 47 21 0 chr11 78078402 78078593 -43765263 - B2_Mm2 SINE B2 0 195 1 2 1180 510 233 6 151 chr11 78078593 78078646 -43765210 - B1_Mur2 SINE Alu -96 53 3 2 1180 512 258 75 15 chr11 78078889 78079023 -43764833 - B1F1 SINE Alu -1 148 7 2 1180 228 111 0 0 chr11 78080919 78080955 -43762901 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1180 987 95 0 75 chr11 78081234 78081393 -43762463 - B1_Mus1 SINE Alu 0 148 2 2 1180 751 138 62 0 chr11 78082623 78082753 -43761103 - B1_Mus1 SINE Alu 0 148 11 2 1180 379 280 85 85 chr11 78082626 78082790 -43761066 - B4 SINE B4 -69 223 60 2 1180 335 293 104 62 chr11 78083334 78083527 -43760329 - L1MC5 LINE L1 -54 7907 7707 2 1180 371 73 0 18 chr11 78083541 78083597 -43760259 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1180 243 0 0 0 chr11 78083620 78083647 -43760209 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1180 513 268 80 139 chr11 78083672 78083910 -43759946 + B4A SINE B4 1 224 -68 2 1180 573 193 27 9 chr11 78083937 78084047 -43759809 + PB1D9 SINE Alu 9 120 0 2 1180 360 158 0 50 chr11 78084067 78084127 -43759729 + B3A SINE B2 1 57 -141 2 1180 1107 86 13 0 chr11 78084118 78084270 -43759586 - B2_Mm1t SINE B2 -39 154 1 2 1180 259 253 50 50 chr11 78087528 78087628 -43756228 - MLT1A LTR MaLR -12 362 263 2 1180 611 285 8 0 chr11 78089050 78089180 -43754676 - RSINE1 SINE B4 -30 135 5 2 1180 394 194 35 104 chr11 78089338 78089453 -43754403 - PB1D10 SINE Alu 0 117 11 2 1180 890 157 49 33 chr11 78089640 78089651 -43754205 - B2_Mm2 SINE B2 -4 191 182 2 1180 1140 41 0 52 chr11 78089651 78089806 -43754050 + B1_Mm SINE Alu 1 147 0 2 1180 890 157 49 33 chr11 78089806 78089978 -43753878 - B2_Mm2 SINE B2 -14 181 5 2 1180 192 125 0 0 chr11 78089990 78090022 -43753834 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1180 1133 95 0 0 chr11 78090032 78090179 -43753677 - B1_Mus2 SINE Alu 0 147 1 2 1180 653 12 0 0 chr11 78090196 78090277 -43753579 - L1Md_T LINE L1 0 6582 6502 2 1180 459 279 18 9 chr11 78091102 78091214 -43752642 + PB1D9 SINE Alu 6 118 -2 2 1180 786 54 78 43 chr11 78091690 78091806 -43752050 + PB1D9 SINE Alu 1 120 0 2 1180 22 35 0 0 chr11 78092772 78092801 -43751055 + AT_rich Low_complexity Low_complexity 1 29 0 2 1180 409 204 93 46 chr11 78092811 78092919 -43750937 + PB1D9 SINE Alu 1 113 -7 2 1180 278 263 53 0 chr11 78092926 78093002 -43750854 - PB1D7 SINE Alu -11 109 30 2 1180 310 239 10 111 chr11 78093728 78093827 -43750029 - PB1D10 SINE Alu 0 117 29 2 1180 924 163 7 0 chr11 78093920 78094067 -43749789 - B1_Mus1 SINE Alu 0 148 1 2 1180 349 244 26 0 chr11 78094482 78094560 -43749296 + ID4 SINE ID 4 83 0 2 1180 777 241 59 0 chr11 78094815 78095002 -43748854 - B3A SINE B2 0 198 1 2 1180 871 261 19 23 chr11 78095022 78095238 -43748618 - B3 SINE B2 0 216 2 2 1180 658 306 98 22 chr11 78095378 78095602 -43748254 - B4A SINE B4 -2 290 50 2 1180 636 235 78 56 chr11 78095688 78095868 -43747988 - B3 SINE B2 -30 186 3 2 1180 226 171 24 24 chr11 78095888 78095930 -43747926 - RSINE1 SINE B4 -114 51 10 2 1180 407 269 49 56 chr11 78095936 78096078 -43747778 - B1_Mur2 SINE Alu -6 143 3 2 1180 225 235 38 38 chr11 78096141 78096194 -43747662 + B1F SINE Alu 12 64 -85 2 1180 489 222 50 164 chr11 78096295 78096435 -43747421 - B1F SINE Alu 0 149 4 2 1180 395 199 102 37 chr11 78096935 78097041 -43746815 - B1_Mur2 SINE Alu -1 148 38 2 1180 819 248 68 19 chr11 78097041 78097247 -43746609 - B3 SINE B2 0 216 1 2 1180 1390 87 11 0 chr11 78097266 78097451 -43746405 - B2_Mm1t SINE B2 -6 187 1 2 1180 557 180 52 43 chr11 78098042 78098158 -43745698 + PB1D9 SINE Alu 2 118 -2 2 1180 372 274 0 12 chr11 78098824 78098909 -43744947 + ID SINE ID 1 84 -140 2 1180 1180 48 0 40 chr11 78099658 78099810 -43744046 + B1_Mm SINE Alu 2 147 0 2 1180 240 35 0 0 chr11 78099834 78099863 -43743993 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1180 376 346 44 15 chr11 78100598 78100733 -43743123 + ID_B1 SINE B4 86 224 0 2 1180 367 252 100 10 chr11 78101828 78101928 -43741928 + PB1D10 SINE Alu 9 117 0 2 1180 364 181 62 18 chr11 78101930 78102037 -43741819 + B1_Mus2 SINE Alu 1 117 0 2 1180 1682 31 0 0 chr11 78102058 78102251 -43741605 + B2_Mm1a SINE B2 1 193 0 2 1180 212 196 18 0 chr11 78103789 78103845 -43740011 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1180 439 106 372 0 chr11 78104741 78104835 -43739021 + URR1A DNA MER1_type 49 177 -49 2 1180 402 209 130 15 chr11 78106689 78106820 -43737036 + B1F SINE Alu 2 147 -2 2 1180 1222 54 0 0 chr11 78107172 78107319 -43736537 + B1_Mm SINE Alu 1 147 0 2 1180 230 241 36 18 chr11 78108185 78108240 -43735616 - MLT2F LTR ERVL -305 358 303 2 1180 670 169 93 29 chr11 78108666 78108806 -43735050 + B1_Mur4 SINE Alu 2 150 0 2 1180 238 269 134 0 chr11 78109380 78109447 -43734409 - ID4 SINE ID -3 80 5 2 1180 316 250 26 13 chr11 78109516 78109593 -43734263 - ID_B1 SINE B4 -60 164 87 2 1180 233 247 45 90 chr11 78109593 78109605 -43734251 - MT2B2 LTR ERVL -343 241 157 2 1180 1147 182 29 5 chr11 78110086 78110290 -43733566 + B3 SINE B2 1 209 -7 2 1180 966 103 0 58 chr11 78110413 78110568 -43733288 - B1_Mus1 SINE Alu -1 147 2 2 1180 248 0 0 30 chr11 78110646 78110679 -43733177 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1180 1181 22 0 7 chr11 78110680 78110816 -43733040 - B1_Mm SINE Alu -12 135 1 2 1180 927 184 96 10 chr11 78110818 78111016 -43732840 - B3 SINE B2 0 216 2 3 1180 359 237 188 26 chr11 78111145 78111262 -43732594 + B1_Mur1 SINE Alu 6 141 -8 3 1180 780 200 0 0 chr11 78111358 78111493 -43732363 + B1_Mus1 SINE Alu 13 147 -1 3 1180 654 203 109 0 chr11 78111579 78111707 -43732149 + B1_Mur3 SINE Alu 2 143 -6 3 1180 1279 78 84 0 chr11 78111714 78111893 -43731963 + B2_Mm2 SINE B2 1 194 -1 3 1180 216 0 0 0 chr11 78111989 78112013 -43731843 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1180 1105 82 0 14 chr11 78112025 78112173 -43731683 + B1_Mus2 SINE Alu 2 147 0 3 1180 3986 98 53 16 chr11 78112607 78113186 -43730670 - MT2B LTR ERVL 0 601 1 3 1180 413 186 23 23 chr11 78113243 78113331 -43730525 + PB1D7 SINE Alu 33 120 0 3 1180 241 237 0 48 chr11 78113357 78113419 -43730437 + tRNA-Ala-GCA tRNA tRNA 16 74 -1 3 1180 237 259 10 156 chr11 78113577 78113673 -43730183 + MT2B LTR ERVL 158 239 -362 3 1180 553 233 57 24 chr11 78113602 78113725 -43730131 + B1_Mur4 SINE Alu 18 144 -6 3 1180 985 302 21 32 chr11 78113797 78114004 -43729852 - B4A SINE B4 -6 286 86 3 1180 879 155 42 0 chr11 78114004 78114146 -43729710 - B1_Mur2 SINE Alu -1 148 1 3 1180 985 302 21 32 chr11 78114146 78114222 -43729634 - B4A SINE B4 -207 85 6 3 1180 244 203 185 8 chr11 78114227 78114346 -43729510 - Charlie5 DNA MER1_type -30 2594 2455 3 1180 21 0 0 0 chr11 78115247 78115268 -43728588 + GC_rich Low_complexity Low_complexity 1 21 0 3 1180 857 169 7 0 chr11 78115996 78116138 -43727718 - B1_Mus1 SINE Alu 0 148 6 3 1180 448 252 51 135 chr11 78115998 78116154 -43727702 - B4 SINE B4 -69 223 81 3 1180 22 56 0 0 chr11 78116165 78116201 -43727655 + AT_rich Low_complexity Low_complexity 1 36 0 3 1180 315 305 0 35 chr11 78116424 78116509 -43727347 - ID4_ SINE ID 0 83 2 3 1180 1364 84 0 30 chr11 78116547 78116584 -43727272 - B2_Mm1a SINE B2 -1 192 161 3 1180 216 0 0 0 chr11 78116584 78116608 -43727248 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 1180 1364 84 0 30 chr11 78116608 78116767 -43727089 - B2_Mm1a SINE B2 -33 160 2 3 1180 959 113 42 14 chr11 78116770 78116914 -43726942 - B1_Mur4 SINE Alu -1 149 2 3 1180 1452 89 0 5 chr11 78117012 78117205 -43726651 - B2_Mm2 SINE B2 -3 192 1 3 1181 248 286 122 0 chr11 78118962 78119060 -43724796 + ID_B1 SINE B4 82 191 -33 3 1181 802 180 57 7 chr11 78119097 78119237 -43724619 + B1_Mus1 SINE Alu 2 148 0 3 1181 253 239 64 13 chr11 78119328 78119405 -43724451 - ID2 SINE ID -65 87 2 3 1181 1232 41 0 0 chr11 78119445 78119592 -43724264 - B1_Mus2 SINE Alu 0 147 1 3 1181 715 164 156 0 chr11 78119728 78119856 -43724000 - B1_Mur4 SINE Alu 0 150 3 3 1181 279 271 128 85 chr11 78119994 78120135 -43723721 - B1F SINE Alu 0 149 3 3 1181 615 203 8 25 chr11 78120164 78120285 -43723571 - PB1D9 SINE Alu 0 120 2 3 1181 245 261 124 93 chr11 78120286 78120383 -43723473 - B1F2 SINE Alu -49 100 1 3 1181 310 295 38 9 chr11 78120878 78120984 -43722872 + Lx8 LINE L1 5802 5910 -1563 3 1181 285 29 0 0 chr11 78120985 78121019 -43722837 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1181 203 255 0 52 chr11 78121106 78121164 -43722692 + GA-rich Low_complexity Low_complexity 3 57 0 3 1181 231 257 143 0 chr11 78121231 78121301 -43722555 + B3 SINE B2 137 216 0 3 1181 234 280 65 130 chr11 78121382 78121396 -43722460 + MT2B LTR ERVL 151 218 -383 3 1181 519 145 92 0 chr11 78121396 78121498 -43722358 + B1_Mus2 SINE Alu 1 112 -8 3 1181 2160 232 103 115 chr11 78121492 78121766 -43722090 - RMER12 LTR ERVK -106 1216 1002 3 1181 862 167 42 31 chr11 78121766 78121958 -43721898 + B2_Mm2 SINE B2 2 195 0 3 1181 2160 214 112 97 chr11 78121958 78121986 -43721870 - RMER12 LTR ERVK -321 1001 973 3 1181 1554 43 27 0 chr11 78121986 78122174 -43721682 + B2_Mm1t SINE B2 1 193 0 3 1181 2160 214 112 97 chr11 78122174 78122358 -43721498 - RMER12 LTR ERVK -350 972 736 3 1181 1214 115 20 35 chr11 78122358 78122396 -43721460 - B2_Mm2 SINE B2 0 195 162 3 1181 216 0 0 0 chr11 78122396 78122420 -43721436 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1181 1214 115 20 35 chr11 78122420 78122579 -43721277 - B2_Mm2 SINE B2 -34 161 1 3 1181 2160 214 112 97 chr11 78122579 78122603 -43721253 - RMER12 LTR ERVK -587 735 718 3 1181 1273 103 43 0 chr11 78122603 78122787 -43721069 - B2_Mm2 SINE B2 -3 192 1 3 1181 2160 214 112 97 chr11 78122787 78123028 -43720828 - RMER12 LTR ERVK -605 717 505 3 1181 1243 41 0 0 chr11 78123028 78123175 -43720681 - B1_Mm SINE Alu 0 147 1 3 1181 2160 214 112 97 chr11 78123175 78123272 -43720584 - RMER12 LTR ERVK -818 504 411 3 1181 1470 138 4 21 chr11 78123268 78123504 -43720352 - RMER12 LTR ERVK -1090 232 1 3 1181 219 219 75 45 chr11 78123504 78123546 -43720310 + B1_Mur2 SINE Alu 104 147 -2 3 1181 465 306 67 0 chr11 78123577 78123711 -43720145 + B1F SINE Alu 1 143 -6 3 1181 298 272 297 7 chr11 78123717 78123865 -43719991 + B3 SINE B2 1 191 -25 3 1181 514 284 44 15 chr11 78123897 78124033 -43719823 + RSINE1 SINE B4 12 151 -14 3 1181 376 296 110 16 chr11 78124141 78124268 -43719588 - B3A SINE B2 -41 157 19 3 1181 411 248 87 29 chr11 78124278 78124382 -43719474 + ID_B1 SINE B4 102 211 -13 3 1181 427 186 91 48 chr11 78124995 78125136 -43718720 + B1_Mur3 SINE Alu 14 149 0 3 1181 559 95 0 31 chr11 78125136 78125234 -43718622 + (GGAAA)n Simple_repeat Simple_repeat 2 96 0 3 1181 343 306 19 0 chr11 78125242 78125350 -43718506 - PB1D10 SINE Alu -7 110 1 3 1181 274 250 83 0 chr11 78125418 78125490 -43718366 + ID4_ SINE ID 1 78 -5 3 1181 217 205 0 0 chr11 78125498 78125537 -43718319 + G-rich Low_complexity Low_complexity 5 43 0 3 1181 300 240 9 158 chr11 78125542 78125621 -43718235 + B4 SINE B4 18 80 -212 3 1181 1676 26 5 0 chr11 78125621 78125813 -43718043 + B2_Mm1t SINE B2 1 193 0 3 1181 300 240 9 158 chr11 78125813 78125847 -43718009 + B4 SINE B4 81 114 -178 3 1181 400 148 24 47 chr11 78125886 78125971 -43717885 - B3 SINE B2 -7 209 127 3 1181 855 95 0 8 chr11 78126016 78126133 -43717723 + B1_Mus1 SINE Alu 23 138 -10 3 1181 776 228 13 100 chr11 78126150 78126379 -43717477 - B3 SINE B2 -6 210 2 3 1181 277 262 94 12 chr11 78126383 78126468 -43717388 - B4 SINE B4 -200 92 1 3 1181 308 289 63 105 chr11 78127410 78127553 -43716303 - MT2B LTR ERVL -288 313 177 3 1181 563 266 0 9 chr11 78127455 78127565 -43716291 - B1_Mur2 SINE Alu -40 109 1 3 1181 278 216 0 13 chr11 78128922 78128997 -43714859 + CT-rich Low_complexity Low_complexity 1 74 0 3 1181 786 117 0 0 chr11 78129220 78129340 -43714516 + (TC)n Simple_repeat Simple_repeat 2 121 0 3 1181 1341 88 0 40 chr11 78129578 78129601 -43714255 - B2_Mm2 SINE B2 0 195 173 3 1181 285 211 26 90 chr11 78129601 78129679 -43714177 - ID4_ SINE ID -10 73 1 3 1181 1341 88 0 40 chr11 78129679 78129857 -43713999 - B2_Mm2 SINE B2 -23 172 2 3 1181 602 220 149 32 chr11 78129909 78130097 -43713759 - B3 SINE B2 -6 210 1 3 1181 470 161 0 12 chr11 78130825 78130907 -43712949 + B4 SINE B4 1 81 -211 3 1181 236 196 52 103 chr11 78130907 78130922 -43712934 + B3 SINE B2 1 92 -124 3 1181 837 144 0 41 chr11 78131005 78131150 -43712706 + B1_Mus2 SINE Alu 9 147 0 3 1181 384 248 120 32 chr11 78131341 78131499 -43712357 - MER58A DNA MER1_type -23 201 30 3 1181 2864 94 37 5 chr11 78131582 78131990 -43711866 - BGLII LTR ERVK 0 421 1 3 1181 719 235 98 22 chr11 78132403 78132586 -43711270 + B3A SINE B2 2 198 0 3 1181 312 94 0 0 chr11 78132588 78132641 -43711215 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 3 1181 1452 69 37 0 chr11 78133223 78133411 -43710445 + B2_Mm2 SINE B2 1 195 0 3 1181 244 241 56 0 chr11 78133417 78133471 -43710385 - ID_B1 SINE B4 -19 205 149 3 1181 1254 84 73 0 chr11 78135344 78135523 -43708333 - B2_Mm1a SINE B2 0 193 2 3 1181 334 370 0 27 chr11 78135717 78135828 -43708028 + PB1 SINE Alu 5 112 -15 3 1181 309 188 231 65 chr11 78140924 78141032 -43702824 - MIR SINE MIR -34 228 103 3 1181 234 297 56 65 chr11 78141141 78141249 -43702607 + PB1 SINE Alu 21 127 0 3 1181 1569 62 0 5 chr11 78141363 78141557 -43702299 + B2_Mm1t SINE B2 1 193 0 3 1181 259 171 260 13 chr11 78141641 78141718 -43702138 + B1F SINE Alu 2 97 -52 3 1181 653 211 14 50 chr11 78142734 78142874 -43700982 - RSINE1 SINE B4 0 165 31 3 1181 425 166 4 0 chr11 78143362 78143450 -43700406 - B1_Mur3 SINE Alu 0 149 60 3 1181 3428 53 32 5 chr11 78143489 78144002 -43699854 - L1Md_F3 LINE L1 0 6584 6135 3 1181 202 290 0 0 chr11 78144002 78144019 -43699837 + T-rich Low_complexity Low_complexity 2 18 0 3 1181 869 153 22 0 chr11 78144244 78144381 -43699475 + B1_Mur1 SINE Alu 5 144 -5 3 1181 451 293 9 0 chr11 78144525 78144641 -43699215 - PB1D7 SINE Alu -2 118 2 3 1181 309 109 0 0 chr11 78144764 78144810 -43699046 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1181 1237 43 0 0 chr11 78144815 78144955 -43698901 - B1_Mm SINE Alu -7 140 1 3 1181 641 193 168 74 chr11 78144979 78145130 -43698726 - B3 SINE B2 -7 209 40 3 1181 1320 71 21 42 chr11 78145130 78145321 -43698535 - B2_Mm1t SINE B2 -6 187 1 3 1181 641 193 168 74 chr11 78145321 78145359 -43698497 - B3 SINE B2 -177 39 2 3 1181 201 94 0 0 chr11 78145426 78145458 -43698398 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1181 1021 75 152 24 chr11 78145562 78145726 -43698130 - B2_Mm2 SINE B2 -9 186 2 3 1181 1265 128 0 6 chr11 78145747 78145928 -43697928 - B2_Mm2 SINE B2 -14 181 2 3 1181 2649 122 46 19 chr11 78146586 78146996 -43696860 + MTC LTR MaLR 1 421 0 3 1181 492 269 33 33 chr11 78147606 78147756 -43696100 + ID_B1 SINE B4 70 219 -5 3 1181 985 232 14 19 chr11 78147768 78147979 -43695877 + B3 SINE B2 1 210 -6 3 1181 725 234 29 18 chr11 78147991 78148173 -43695683 - B3 SINE B2 -23 172 2 4 1181 1082 65 50 0 chr11 78148190 78148329 -43695527 - B1_Mm SINE Alu 0 147 2 4 1181 360 97 0 0 chr11 78148375 78148437 -43695419 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1181 969 151 0 7 chr11 78148444 78148591 -43695265 + B1_Mus1 SINE Alu 3 148 0 4 1181 420 264 61 35 chr11 78148692 78148806 -43695050 + PB1D10 SINE Alu 1 117 0 4 1181 315 161 0 0 chr11 78148806 78148862 -43694994 + A-rich Low_complexity Low_complexity 1 56 0 4 1181 1042 171 72 10 chr11 78149188 78149383 -43694473 - B3 SINE B2 -3 213 7 4 1181 1134 89 0 0 chr11 78149410 78149556 -43694300 - B1_Mus2 SINE Alu 0 147 2 4 1181 926 176 7 0 chr11 78149566 78149714 -43694142 - B1_Mur3 SINE Alu 0 149 1 4 1181 432 288 121 0 chr11 78149725 78149857 -43693999 - B1_Mur2 SINE Alu -1 148 1 4 1181 837 185 14 0 chr11 78149886 78150032 -43693824 - B1_Mus1 SINE Alu 0 148 1 4 1181 324 120 0 0 chr11 78150359 78150409 -43693447 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1181 1161 75 7 0 chr11 78150409 78150555 -43693301 - B1_Mus1 SINE Alu 0 148 2 4 1181 555 167 22 0 chr11 78151503 78151641 -43692215 + CT-rich Low_complexity Low_complexity 2 142 0 4 1181 231 128 59 78 chr11 78151701 78151752 -43692104 - PB1D10 SINE Alu 0 117 68 4 1181 814 243 34 120 chr11 78151712 78151946 -43691910 - ID_B1 SINE B4 -7 217 4 4 1181 1361 110 0 0 chr11 78151971 78152006 -43691850 - B2_Mm2 SINE B2 -2 193 159 4 1181 315 0 0 0 chr11 78152006 78152041 -43691815 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 1181 1361 110 0 0 chr11 78152041 78152196 -43691660 - B2_Mm2 SINE B2 -37 158 4 4 1181 913 135 211 11 chr11 78152226 78152406 -43691450 - B3 SINE B2 0 216 1 4 1181 188 163 0 23 chr11 78152425 78152469 -43691387 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 4 1181 477 274 18 43 chr11 78152469 78152633 -43691223 - RSINE1 SINE B4 -3 162 3 4 1181 919 174 7 0 chr11 78153864 78154008 -43689848 - B1_Mur1 SINE Alu -2 147 3 4 1181 1133 138 132 5 chr11 78154038 78154227 -43689629 - B3 SINE B2 0 216 4 4 1181 387 0 0 0 chr11 78154242 78154285 -43689571 + (TTCTC)n Simple_repeat Simple_repeat 2 44 0 4 1181 180 0 0 0 chr11 78154285 78154304 -43689552 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 4 1181 371 356 83 39 chr11 78156001 78156255 -43687601 + MIRc SINE MIR 2 266 -2 4 1181 219 321 64 71 chr11 78156508 78156649 -43687207 - L2a LINE L2 -8 3418 3279 4 1181 203 309 15 0 chr11 78157159 78157227 -43686629 + (CTGGGG)n Simple_repeat Simple_repeat 4 72 0 4 1181 290 296 77 100 chr11 78157913 78158163 -43685693 + MIR SINE MIR 32 266 -2 4 1181 528 224 0 61 chr11 78159629 78159743 -43684113 + ID_B1 SINE B4 111 217 -7 4 1181 386 191 80 60 chr11 78159654 78159754 -43684102 + B1F2 SINE Alu 48 149 0 4 1181 206 271 0 0 chr11 78161411 78161459 -43682397 + G-rich Low_complexity Low_complexity 4 51 0 4 1181 246 62 0 0 chr11 78161515 78161547 -43682309 + (GCTG)n Simple_repeat Simple_repeat 3 34 0 4 1181 281 209 118 21 chr11 78162716 78162809 -43681047 - MTE2b LTR MaLR 0 379 278 4 1181 291 157 0 0 chr11 78163500 78163551 -43680305 + GA-rich Low_complexity Low_complexity 3 53 0 4 1181 291 364 18 139 chr11 78163735 78163882 -43679974 - B4A SINE B4 0 292 129 4 1181 300 222 31 16 chr11 78163882 78163946 -43679910 + B3 SINE B2 67 131 -85 4 1181 291 364 18 139 chr11 78163946 78163998 -43679858 - B4A SINE B4 0 128 69 4 1181 207 0 0 0 chr11 78163998 78164021 -43679835 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1181 293 225 32 18 chr11 78164021 78164089 -43679767 - B4 SINE B4 -224 68 1 4 1181 659 286 17 11 chr11 78164151 78164328 -43679528 - B4A SINE B4 -1 291 114 4 1181 1210 68 0 0 chr11 78164357 78164504 -43679352 - B1_Mus1 SINE Alu 0 148 2 4 1181 3021 148 48 22 chr11 78164550 78164984 -43678872 + RMER4B LTR ERVK 32 481 -104 4 1181 1465 78 16 0 chr11 78164984 78165175 -43678681 - B2_Mm2 SINE B2 -1 194 1 4 1181 3021 148 48 22 chr11 78165175 78165280 -43678576 + RMER4B LTR ERVK 482 585 0 4 1181 2549 110 96 10 chr11 78165366 78165753 -43678103 + MTC LTR MaLR 2 421 0 4 1181 330 258 3 0 chr11 78165814 78165884 -43677972 - ID4 SINE ID -76 76 5 4 1181 221 322 34 0 chr11 78165960 78165976 -43677880 + B4 SINE B4 70 87 -205 4 1181 298 191 3 0 chr11 78165976 78166027 -43677829 + PB1D9 SINE Alu 3 54 -95 4 1181 230 263 0 17 chr11 78166447 78166505 -43677351 + GA-rich Low_complexity Low_complexity 2 58 0 4 1181 317 331 115 0 chr11 78166505 78166644 -43677212 + HAL1-3A_ME LINE L1 2284 2438 -420 4 1181 464 139 0 0 chr11 78167205 78167277 -43676579 - PB1D9 SINE Alu -48 72 1 4 1181 604 274 32 21 chr11 78167277 78167451 -43676405 - B3 SINE B2 -8 185 9 4 1181 1597 32 16 0 chr11 78167552 78167738 -43676118 - B2_Mm2 SINE B2 -6 189 1 4 1181 1487 62 5 5 chr11 78167753 78167946 -43675910 - B2_Mm1a SINE B2 0 193 1 4 1181 588 90 0 33 chr11 78168109 78168201 -43675655 - B1_Mus2 SINE Alu -32 115 27 4 1181 362 245 21 21 chr11 78168210 78168306 -43675550 - PB1 SINE Alu -2 125 30 4 1181 255 241 80 9 chr11 78168542 78168655 -43675201 - B4A SINE B4 -128 164 44 4 1181 270 243 165 0 chr11 78168580 78168683 -43675173 - B3A SINE B2 -77 121 2 4 1181 253 300 0 160 chr11 78168734 78168769 -43675087 - ID_B1 SINE B4 -42 182 162 4 1181 1460 52 5 76 chr11 78168769 78168979 -43674877 + B2_Mm2 SINE B2 1 195 0 4 1181 253 300 0 160 chr11 78168979 78169062 -43674794 - ID_B1 SINE B4 -63 161 83 4 1181 804 96 0 0 chr11 78170064 78170179 -43673677 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 4 1181 686 210 94 19 chr11 78170179 78170339 -43673517 - B3A SINE B2 -24 174 3 4 1181 1066 211 12 86 chr11 78170518 78170762 -43673094 - URR1A DNA MER1_type 0 226 1 4 1181 734 194 82 21 chr11 78170780 78170985 -43672871 + B3A SINE B2 3 204 -12 4 1181 204 40 0 0 chr11 78171311 78171336 -43672520 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1181 288 0 0 0 chr11 78171345 78171377 -43672479 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1181 368 164 0 15 chr11 78172812 78172880 -43670976 - URR1A DNA MER1_type -159 67 1 4 1181 195 350 0 33 chr11 78173368 78173475 -43670381 + MIRb SINE MIR 155 257 -5 4 1181 329 244 0 60 chr11 78173479 78173562 -43670294 - ID4 SINE ID -3 80 3 4 1181 293 0 27 0 chr11 78175330 78175367 -43668489 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1181 1243 48 0 0 chr11 78175367 78175505 -43668351 - B1_Mus1 SINE Alu -8 140 3 4 1181 864 204 53 11 chr11 78175599 78175787 -43668069 - B3 SINE B2 0 216 21 4 1181 359 57 38 0 chr11 78175808 78175861 -43667995 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1181 974 122 7 7 chr11 78175870 78176011 -43667845 - B1_Mm SINE Alu -6 141 1 4 1181 235 316 119 30 chr11 78176039 78176140 -43667716 - PB1D10 SINE Alu -7 110 1 4 1181 267 317 24 10 chr11 78177540 78177682 -43666174 - MIR3 SINE MIR -28 180 45 4 1181 259 250 134 39 chr11 78179649 78179786 -43664070 + MIRc SINE MIR 37 184 -78 4 1181 216 190 0 23 chr11 78182351 78182376 -43661480 + polypyrimidine Low_complexity Low_complexity 19 43 0 4 1181 1114 102 0 0 chr11 78182376 78182523 -43661333 - B1_Mus1 SINE Alu 0 148 2 4 1181 216 190 0 23 chr11 78182523 78182540 -43661316 + polypyrimidine Low_complexity Low_complexity 2 18 0 4 1181 271 306 51 0 chr11 78183015 78183113 -43660743 - MIR3 SINE MIR -9 199 97 4 1181 291 53 0 0 chr11 78183675 78183713 -43660143 - MIRc SINE MIR -143 125 88 4 1181 211 226 151 97 chr11 78183816 78183909 -43659947 + PB1D10 SINE Alu 20 117 0 4 1181 521 211 0 27 chr11 78184282 78184394 -43659462 - PB1D10 SINE Alu -8 109 1 4 1181 182 150 25 0 chr11 78185607 78185647 -43658209 + (TAGA)n Simple_repeat Simple_repeat 3 43 0 4 1181 200 305 81 47 chr11 78186346 78186494 -43657362 + MIRb SINE MIR 116 268 0 4 1181 323 304 196 0 chr11 78186638 78186776 -43657080 - ID_B1 SINE B4 -59 165 1 4 1181 1298 67 79 0 chr11 78186782 78186960 -43656896 - B2_Mm1t SINE B2 0 193 2 4 1181 1023 59 0 0 chr11 78186974 78187109 -43656747 - B1_Mus1 SINE Alu 0 148 14 4 1181 390 277 0 85 chr11 78187102 78187232 -43656624 - B1F SINE Alu -11 138 20 4 1181 275 325 16 14 chr11 78187252 78187394 -43656462 - MIRc SINE MIR -100 176 29 4 1181 280 367 74 13 chr11 78188095 78188244 -43655612 + MIR SINE MIR 33 190 -72 4 1181 565 182 151 26 chr11 78189087 78189239 -43654617 + MIRb SINE MIR 98 268 0 4 1181 900 155 0 7 chr11 78190049 78190198 -43653658 + B1_Mur2 SINE Alu 2 149 0 4 1181 437 252 75 31 chr11 78191011 78191171 -43652685 - MIR SINE MIR -92 170 4 4 1181 405 0 0 0 chr11 78191296 78191341 -43652515 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1181 558 288 0 0 chr11 78191767 78191899 -43651957 + RSINE1 SINE B4 22 153 -12 4 1181 570 29 0 0 chr11 78191902 78191970 -43651886 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1181 201 108 0 0 chr11 78192124 78192161 -43651695 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1181 306 194 9 46 chr11 78192711 78192819 -43651037 + (TGGA)n Simple_repeat Simple_repeat 3 106 0 4 1181 344 212 0 0 chr11 78193354 78193420 -43650436 + ID_B1 SINE B4 105 170 -54 4 1181 343 263 0 13 chr11 78193420 78193431 -43650425 + PB1D10 SINE Alu 24 99 -18 4 1181 297 0 0 0 chr11 78193434 78193467 -43650389 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1181 306 0 0 0 chr11 78193467 78193500 -43650356 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1181 878 71 125 8 chr11 78193519 78193647 -43650209 + B1_Mus1 SINE Alu 4 146 -2 5 1181 463 216 108 39 chr11 78194912 78195042 -43648814 - B1_Mur1 SINE Alu -10 139 1 5 1181 247 174 14 28 chr11 78195327 78195373 -43648483 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1181 1012 133 0 0 chr11 78195373 78195523 -43648333 - B1_Mur4 SINE Alu 0 150 1 5 1181 247 174 14 28 chr11 78195523 78195547 -43648309 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5 1181 555 206 15 73 chr11 78195549 78195685 -43648171 - B1F SINE Alu 0 149 22 5 1181 243 0 0 0 chr11 78195846 78195873 -43647983 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1181 186 43 0 0 chr11 78197005 78197028 -43646828 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1181 358 258 151 0 chr11 78197608 78197701 -43646155 + PB1D10 SINE Alu 5 111 -6 5 1181 1176 65 0 0 chr11 78197830 78197984 -43645872 + (TG)n Simple_repeat Simple_repeat 2 155 0 5 1181 327 165 11 23 chr11 78201112 78201199 -43642657 + CT-rich Low_complexity Low_complexity 2 87 0 5 1181 873 238 147 12 chr11 78201421 78201672 -43642184 + B4A SINE B4 2 286 -6 5 1181 1489 83 0 5 chr11 78201774 78201968 -43641888 + B2_Mm2 SINE B2 2 194 -1 5 1181 236 226 0 36 chr11 78201971 78202026 -43641830 - B1F SINE Alu -88 61 9 5 1181 434 326 15 7 chr11 78202553 78202689 -43641167 + RSINE1 SINE B4 21 157 -8 5 1181 570 115 87 0 chr11 78202774 78202878 -43640978 + B1_Mur4 SINE Alu 2 114 -36 5 1181 2266 152 10 46 chr11 78202923 78203336 -43640520 + RMER10B LTR ERVL 1 398 0 5 1181 812 130 29 0 chr11 78203407 78203545 -43640311 + B1_Mur4 SINE Alu 9 150 0 5 1181 239 21 20 59 chr11 78203548 78203599 -43640257 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1181 226 278 109 40 chr11 78203742 78203843 -43640013 + PB1D10 SINE Alu 3 110 -7 5 1181 409 278 108 31 chr11 78204302 78204432 -43639424 + RSINE1 SINE B4 3 142 -23 5 1181 29 47 0 0 chr11 78204437 78204480 -43639376 + AT_rich Low_complexity Low_complexity 1 43 0 5 1181 1253 41 0 0 chr11 78204611 78204758 -43639098 - B1_Mm SINE Alu 0 147 1 5 1181 792 190 42 0 chr11 78204991 78205133 -43638723 + B1F1 SINE Alu 1 148 -1 5 1181 23 86 0 0 chr11 78205305 78205363 -43638493 + AT_rich Low_complexity Low_complexity 1 58 0 5 1181 386 276 88 6 chr11 78205405 78205576 -43638280 + L1M5 LINE L1 5254 5438 -686 5 1181 204 40 0 0 chr11 78205664 78205689 -43638167 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1181 607 290 19 0 chr11 78205760 78205922 -43637934 - RSINE1 SINE B4 0 165 1 5 1181 518 274 29 7 chr11 78205963 78206099 -43637757 - B1F SINE Alu -5 144 6 5 1181 640 289 112 34 chr11 78206708 78206977 -43636879 - B4A SINE B4 0 292 3 5 1181 2819 68 2 30 chr11 78206989 78207396 -43636460 + MTB_Mm LTR MaLR 4 399 -8 5 1181 601 193 0 9 chr11 78209596 78209711 -43634145 + B1F SINE Alu 35 148 -1 5 1181 256 279 645 0 chr11 78214587 78214702 -43629154 - ID_B1 SINE B4 -13 211 22 5 1181 375 278 0 20 chr11 78214708 78214807 -43629049 - PB1D10 SINE Alu -20 97 1 5 1181 231 303 30 0 chr11 78215099 78215165 -43628691 + L2c LINE L2 3270 3337 -50 5 1181 609 265 0 0 chr11 78215448 78215565 -43628291 - PB1D10 SINE Alu 0 117 1 5 1181 474 269 31 47 chr11 78216109 78216299 -43627557 + B4A SINE B4 2 226 -66 5 1181 351 0 0 0 chr11 78216309 78216348 -43627508 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1181 270 0 0 0 chr11 78217461 78217491 -43626365 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5 1181 276 186 0 0 chr11 78217491 78217550 -43626306 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1181 813 268 0 0 chr11 78217552 78217709 -43626147 - RSINE1 SINE B4 -7 158 2 5 1181 180 0 0 0 chr11 78217766 78217786 -43626070 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1181 267 281 0 0 chr11 78218685 78218749 -43625107 + PB1D10 SINE Alu 46 109 -8 5 1181 273 215 11 21 chr11 78218752 78218847 -43625009 + GA-rich Low_complexity Low_complexity 3 96 0 5 1181 782 235 30 90 chr11 78218965 78219166 -43624690 + B3 SINE B2 2 190 -5 5 1181 398 281 87 106 chr11 78219191 78219250 -43624606 + MER2 DNA MER2_type 11 70 -275 5 1181 1150 76 7 0 chr11 78219250 78219395 -43624461 + B1_Mus1 SINE Alu 3 148 0 5 1181 398 281 87 106 chr11 78219395 78219507 -43624349 + MER2 DNA MER2_type 71 177 -168 5 1181 341 43 21 0 chr11 78219507 78219554 -43624302 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1181 666 254 21 0 chr11 78219555 78219697 -43624159 - RSINE1 SINE B4 -18 147 3 5 1181 398 281 87 106 chr11 78219697 78219833 -43624023 + MER2 DNA MER2_type 178 315 -30 5 1181 498 17 0 0 chr11 78219858 78219917 -43623939 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 5 1181 502 254 9 0 chr11 78219928 78220042 -43623814 - PB1D10 SINE Alu 0 117 3 5 1181 643 255 132 11 chr11 78220610 78220800 -43623056 + ID_B1 SINE B4 2 214 -10 5 1181 23 0 0 0 chr11 78220808 78220831 -43623025 + AT_rich Low_complexity Low_complexity 1 23 0 5 1181 342 167 202 13 chr11 78220832 78220911 -43622945 - B1_Mur1 SINE Alu -2 147 54 5 1181 441 0 0 0 chr11 78221010 78221059 -43622797 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1181 916 85 62 0 chr11 78221059 78221188 -43622668 - B1_Mus1 SINE Alu -10 138 2 5 1181 21 0 0 0 chr11 78221193 78221214 -43622642 + AT_rich Low_complexity Low_complexity 1 21 0 5 1181 906 146 27 27 chr11 78221216 78221364 -43622492 - B1_Mur4 SINE Alu 0 150 3 5 1181 218 323 0 0 chr11 78221468 78221530 -43622326 - ID4 SINE ID -14 69 8 5 1181 218 290 164 29 chr11 78222825 78222962 -43620894 - MIR SINE MIR -116 152 3 5 1181 518 109 0 11 chr11 78223080 78223173 -43620683 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1181 351 250 127 18 chr11 78223175 78223285 -43620571 - B4 SINE B4 -35 257 136 5 1181 232 132 53 0 chr11 78223272 78223310 -43620546 + B1F SINE Alu 14 53 -96 5 1181 282 235 20 0 chr11 78223845 78223994 -43619862 + (CATAC)n Simple_repeat Simple_repeat 4 155 0 5 1181 314 183 99 0 chr11 78224047 78224118 -43619738 + Tigger5 DNA MER2_type 2151 2228 -178 5 1181 544 259 30 0 chr11 78224119 78224250 -43619606 + ID_B1 SINE B4 88 222 -2 5 1181 484 252 153 35 chr11 78224269 78224413 -43619443 + RSINE1 SINE B4 1 161 -4 5 1181 318 294 26 35 chr11 78224439 78224552 -43619304 + Tigger5 DNA MER2_type 2189 2300 -106 5 1181 734 262 32 27 chr11 78224670 78224858 -43618998 - B4A SINE B4 0 292 104 5 1181 232 379 110 65 chr11 78224952 78224991 -43618865 - B3A SINE B2 -36 162 1 5 1181 291 297 112 43 chr11 78224991 78225107 -43618749 - ID_B1 SINE B4 -100 124 1 5 1181 677 228 0 8 chr11 78225142 78225270 -43618586 - PB1 SINE Alu 0 127 1 5 1181 309 240 208 0 chr11 78226325 78226350 -43617506 - PB1D10 SINE Alu 0 117 2 5 1181 315 206 0 42 chr11 78226350 78226421 -43617435 - B4A SINE B4 -138 154 87 5 1181 220 316 25 0 chr11 78227709 78227788 -43616068 + ID4_ SINE ID 3 83 0 5 1181 315 301 29 29 chr11 78227875 78228012 -43615844 - Charlie4 DNA MER1_type -1 1960 1824 5 1181 234 62 0 0 chr11 78228022 78228054 -43615802 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1181 234 128 0 0 chr11 78228110 78228149 -43615707 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1181 300 133 0 0 chr11 78228152 78228197 -43615659 - HAL1-3A_ME LINE L1 -847 2011 1967 5 1181 610 270 122 20 chr11 78228286 78228490 -43615366 + MER89 LTR ERV1 270 494 -65 5 1181 459 35 0 0 chr11 78228620 78228677 -43615179 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1181 270 0 0 0 chr11 78228677 78228706 -43615150 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1181 293 221 365 0 chr11 78228764 78228868 -43614988 - B1_Mur4 SINE Alu -6 144 3 5 1181 526 309 69 72 chr11 78228875 78229237 -43614619 - RMER5 LTR ERV1 -148 386 26 5 1181 317 279 13 0 chr11 78229280 78229359 -43614497 - PB1 SINE Alu -15 112 33 5 1181 302 307 94 66 chr11 78230471 78230701 -43613155 + L2b LINE L2 2978 3222 -165 5 1181 377 329 24 128 chr11 78231312 78231462 -43612394 + MIR SINE MIR 45 181 -95 5 1181 1133 60 0 0 chr11 78231462 78231595 -43612261 + B1_Mus2 SINE Alu 2 134 -13 5 1181 267 31 0 0 chr11 78231595 78231627 -43612229 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1181 377 294 21 142 chr11 78231627 78231726 -43612130 + MIR SINE MIR 175 260 -2 5 1181 925 245 36 23 chr11 78231837 78232058 -43611798 - ID_B1 SINE B4 0 224 1 5 1181 3162 115 85 33 chr11 78232273 78232812 -43611044 + RMER2 LTR ERV1 1 567 0 5 1181 558 244 17 0 chr11 78233118 78233233 -43610623 - PB1D10 SINE Alu 0 117 1 5 1181 294 29 0 0 chr11 78233542 78233577 -43610279 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1181 190 312 0 0 chr11 78233696 78233760 -43610096 - L2 LINE L2 -1621 1798 1735 5 1181 186 43 0 0 chr11 78234447 78234470 -43609386 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 5 1181 888 174 0 7 chr11 78234471 78234610 -43609246 - B1_Mur4 SINE Alu -12 138 1 5 1181 567 157 29 19 chr11 78234780 78234884 -43608972 - PB1D9 SINE Alu -13 107 3 5 1181 249 233 177 0 chr11 78234951 78235033 -43608823 + MIR SINE MIR 84 172 -90 5 1181 192 261 54 68 chr11 78236492 78236566 -43607290 - L2c LINE L2 -2 3385 3313 5 1181 229 275 149 24 chr11 78236583 78236751 -43607105 - MIRb SINE MIR -31 231 47 5 1181 390 42 0 0 chr11 78236963 78237011 -43606845 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 5 1181 1105 64 42 7 chr11 78237011 78237153 -43606703 - B1_Mus2 SINE Alu 0 147 1 6 1181 1269 27 7 0 chr11 78237362 78237508 -43606348 + B1_Mus2 SINE Alu 1 147 0 6 1181 261 0 0 0 chr11 78237515 78237544 -43606312 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1181 315 209 90 0 chr11 78238214 78238281 -43605575 - HAL1-3A_ME LINE L1 -810 2048 1976 6 1181 784 252 110 35 chr11 78238346 78238519 -43605337 - B4A SINE B4 -18 274 84 6 1181 246 128 0 0 chr11 78238519 78238558 -43605298 + (ATG)n Simple_repeat Simple_repeat 2 40 0 6 1181 784 252 110 35 chr11 78238558 78238639 -43605217 - B4A SINE B4 -209 83 1 6 1181 1025 66 80 0 chr11 78238680 78238817 -43605039 - B1_Mus1 SINE Alu 0 148 1 6 1181 833 217 141 0 chr11 78238852 78239036 -43604820 - B3 SINE B2 -6 210 1 6 1181 1249 74 74 6 chr11 78239833 78240001 -43603855 + B2_Mm2 SINE B2 2 182 -13 6 1181 513 0 0 0 chr11 78240001 78240058 -43603798 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 6 1181 239 306 66 126 chr11 78241038 78241151 -43602705 - B4A SINE B4 -10 282 97 6 1181 284 286 35 12 chr11 78241151 78241236 -43602620 - PB1D9 SINE Alu -22 98 12 6 1181 811 291 35 10 chr11 78241257 78241569 -43602287 - L1MB2 LINE L1 0 6171 5852 6 1181 1178 75 0 0 chr11 78241605 78241752 -43602104 + B1_Mm SINE Alu 1 147 0 6 1181 24 0 0 0 chr11 78241752 78241776 -43602080 + AT_rich Low_complexity Low_complexity 1 24 0 6 1181 253 329 92 7 chr11 78241776 78241917 -43601939 - L1MB2 LINE L1 -365 5806 5654 6 1181 437 274 0 58 chr11 78241937 78242057 -43601799 + MTEa LTR MaLR 9 121 -238 6 1181 276 280 26 13 chr11 78242089 78242165 -43601691 - ID4_ SINE ID -4 79 3 6 1181 304 279 133 9 chr11 78242168 78242273 -43601583 - B1F SINE Alu 0 149 32 6 1181 583 280 8 22 chr11 78242298 78242450 -43601406 + MTEa LTR MaLR 217 376 -3 6 1181 1096 296 81 86 chr11 78242457 78242677 -43601179 + MTEa-int LTR MaLR 5 247 -1333 6 1181 1282 54 57 47 chr11 78242677 78242870 -43600986 + B2_Mm2 SINE B2 1 195 0 6 1181 1096 296 81 86 chr11 78242870 78243154 -43600702 + MTEa-int LTR MaLR 248 513 -1067 6 1181 560 169 0 113 chr11 78243154 78243287 -43600569 + PB1D9 SINE Alu 2 119 -1 6 1181 1096 296 81 86 chr11 78243287 78243351 -43600505 + MTEa-int LTR MaLR 514 574 -1006 6 1181 1333 75 47 21 chr11 78243351 78243541 -43600315 - B2_Mm2 SINE B2 0 195 1 6 1181 668 115 177 0 chr11 78243790 78243903 -43599953 - B1_Mur3 SINE Alu -11 138 6 6 1181 364 188 11 96 chr11 78243819 78243913 -43599943 - MT2B LTR ERVL -356 245 160 6 1181 472 269 59 103 chr11 78243977 78244250 -43599606 - RLTR18 LTR ERVK -355 261 1 6 1181 1133 73 0 0 chr11 78244357 78244494 -43599362 + B1_Mus2 SINE Alu 1 137 -10 6 1181 936 232 43 10 chr11 78244556 78244765 -43599091 + MTEa-int LTR MaLR 1335 1550 -30 6 1181 342 278 78 0 chr11 78244747 78244837 -43599019 + MTEa LTR MaLR 6 102 -268 6 1181 336 232 263 18 chr11 78244925 78245039 -43598817 + MTEa LTR MaLR 238 379 0 6 1181 1167 62 0 14 chr11 78245099 78245247 -43598609 - B1_Mus2 SINE Alu 0 147 2 6 1181 225 0 0 0 chr11 78245247 78245272 -43598584 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 6 1181 588 268 0 66 chr11 78245274 78245410 -43598446 - B1F1 SINE Alu -22 127 1 6 1181 322 336 34 34 chr11 78245306 78245423 -43598433 - B4 SINE B4 -99 193 77 6 1181 707 262 0 0 chr11 78245431 78245576 -43598280 - B1_Mur1 SINE Alu -2 147 3 6 1181 697 182 83 0 chr11 78245577 78245709 -43598147 - B1_Mur1 SINE Alu -3 146 4 6 1181 1544 43 5 0 chr11 78245709 78245896 -43597960 - B2_Mm1t SINE B2 -4 189 2 6 1181 253 330 19 19 chr11 78245898 78246006 -43597850 - L1M3 LINE L1 -586 5603 5496 6 1181 731 259 26 16 chr11 78246087 78246279 -43597577 - B3A SINE B2 -3 195 2 6 1181 1290 65 0 0 chr11 78246298 78246467 -43597389 + (TTC)n Simple_repeat Simple_repeat 1 169 0 6 1181 414 248 79 10 chr11 78246473 78246676 -43597180 - L1M3 LINE L1 -843 5469 5241 6 1181 460 187 110 0 chr11 78246699 78246790 -43597066 - PB1D10 SINE Alu -1 116 16 6 1181 461 243 28 28 chr11 78247436 78247542 -43596314 + PB1D10 SINE Alu 1 106 -11 6 1181 248 250 48 104 chr11 78247542 78247554 -43596302 + MT2B2 LTR ERVL 191 272 -312 6 1181 187 267 64 39 chr11 78248197 78248275 -43595581 + L3 LINE CR1 821 900 -3589 6 1181 286 197 27 27 chr11 78248673 78248746 -43595110 + ID4_ SINE ID 2 74 -9 6 1181 456 297 0 0 chr11 78248792 78248883 -43594973 + PB1D7 SINE Alu 1 91 -29 6 147 664 218 101 13 chr11 78249905 78250054 -43593802 + B3A SINE B2 1 162 -36 6 1182 1128 81 14 0 chr11 78250163 78250311 -43593545 - B1_Mur4 SINE Alu 0 150 1 6 1182 888 156 7 20 chr11 78250328 78250478 -43593378 - B1_Mur1 SINE Alu -1 148 1 6 1182 259 339 0 0 chr11 78250562 78250627 -43593229 - ID4_ SINE ID 0 83 19 6 1182 398 298 26 9 chr11 78250969 78251084 -43592772 + PB1D10 SINE Alu 1 117 0 6 1182 297 0 0 0 chr11 78251157 78251190 -43592666 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1182 381 121 0 88 chr11 78251267 78251358 -43592498 - RMER1B Other Other -2 1064 982 6 1182 1824 174 39 6 chr11 78251357 78251687 -43592169 - RMER1B Other Other -327 739 399 6 1182 348 186 0 17 chr11 78251744 78251804 -43592052 - ID_B1 SINE B4 0 224 166 6 1182 305 287 58 0 chr11 78251745 78251832 -43592024 - PB1D10 SINE Alu 0 117 26 6 1182 507 405 32 3 chr11 78252112 78252397 -43591459 + MER90 LTR ERV1 132 424 -151 6 1182 279 85 0 21 chr11 78252401 78252449 -43591407 + RMER4A LTR ERVK 1 47 -419 6 1182 1226 87 29 6 chr11 78252449 78252623 -43591233 + B2_Mm1t SINE B2 2 179 -14 6 1182 349 142 19 17 chr11 78252654 78252727 -43591129 + B2_Mm2 SINE B2 46 123 -75 6 1182 189 0 0 0 chr11 78252736 78252757 -43591099 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 6 1182 501 180 205 0 chr11 78252778 78252900 -43590956 + B1_Mus2 SINE Alu 1 147 0 6 1182 2091 151 88 32 chr11 78252912 78253102 -43590754 + RMER4A LTR ERVK 33 228 -238 6 1182 624 62 0 0 chr11 78253112 78253193 -43590663 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1182 1003 78 41 34 chr11 78253193 78253328 -43590528 - B1_Mus2 SINE Alu -8 139 1 6 1182 2091 151 88 32 chr11 78253328 78253548 -43590308 + RMER4A LTR ERVK 229 465 -1 6 1182 1225 62 0 0 chr11 78253601 78253747 -43590109 + B1_Mus2 SINE Alu 2 147 0 6 1182 269 82 20 0 chr11 78253759 78253808 -43590048 + (CAAAAA)n Simple_repeat Simple_repeat 4 53 0 6 1182 777 119 0 0 chr11 78253928 78254037 -43589819 + B1_Mus2 SINE Alu 22 130 -17 6 1182 1072 268 76 28 chr11 78254573 78254760 -43589096 - MTEa LTR MaLR -5 374 188 6 1182 354 45 0 0 chr11 78254760 78254804 -43589052 + (CTATG)n Simple_repeat Simple_repeat 4 47 0 6 1182 1072 268 76 28 chr11 78254804 78254973 -43588883 - MTEa LTR MaLR -192 187 2 6 1182 1519 63 16 0 chr11 78255071 78255262 -43588594 + B2_Mm2 SINE B2 2 195 0 6 1182 683 186 149 0 chr11 78255313 78255474 -43588382 - ORR1D1 LTR MaLR 0 374 190 6 1182 1425 231 101 17 chr11 78255617 78255974 -43587882 - MTD LTR MaLR 0 419 33 6 1182 471 255 22 54 chr11 78256048 78256206 -43587650 - ID_B1 SINE B4 0 224 79 6 1182 350 132 36 0 chr11 78256323 78256406 -43587450 + Lx4A LINE L1 6973 7058 0 6 1182 198 0 0 0 chr11 78256424 78256446 -43587410 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 1182 1769 180 52 27 chr11 78256542 78256826 -43587030 + ORR1D1 LTR MaLR 1 291 -83 6 1182 5120 140 62 31 chr11 78256826 78256974 -43586882 + RMER19B LTR ERVK 1 157 -745 6 1182 1261 27 0 7 chr11 78256974 78257121 -43586735 - B1_Mm SINE Alu 0 147 2 6 1182 5120 140 62 31 chr11 78257121 78257847 -43586009 + RMER19B LTR ERVK 158 902 0 6 1182 1769 180 52 27 chr11 78257847 78257927 -43585929 + ORR1D1 LTR MaLR 292 374 0 6 1182 1480 38 53 16 chr11 78258460 78258647 -43585209 - B2_Mm2 SINE B2 0 195 2 6 1182 498 219 0 10 chr11 78258648 78258745 -43585111 - RSINE1 SINE B4 -67 98 3 6 1182 556 111 25 17 chr11 78259777 78259896 -43583960 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 1182 786 250 45 0 chr11 78259937 78260113 -43583743 - B3A SINE B2 -13 185 2 6 1182 31 21 0 20 chr11 78260138 78260155 -43583701 + AT_rich Low_complexity Low_complexity 1 17 0 6 1182 1177 75 0 0 chr11 78260155 78260302 -43583554 + B1_Mus2 SINE Alu 1 147 0 6 1182 31 21 0 20 chr11 78260302 78260333 -43583523 + AT_rich Low_complexity Low_complexity 1 31 0 6 1182 690 297 45 0 chr11 78260333 78260488 -43583368 + B3 SINE B2 2 163 -53 6 1182 243 61 0 0 chr11 78260492 78260525 -43583331 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1182 23 68 0 0 chr11 78260536 78260580 -43583276 + AT_rich Low_complexity Low_complexity 1 44 0 6 1182 362 284 14 0 chr11 78261086 78261160 -43582696 - PB1D7 SINE Alu -44 76 2 6 1182 922 237 30 16 chr11 78261160 78261361 -43582495 - ID_B1 SINE B4 -38 254 44 6 1182 1251 54 0 0 chr11 78261582 78261729 -43582127 + B1_Mus1 SINE Alu 1 147 -1 6 1182 249 57 0 0 chr11 78261730 78261765 -43582091 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6 1182 353 81 449 41 chr11 78262171 78262269 -43581587 - B2_Mm2 SINE B2 -11 184 47 6 1182 1331 96 11 0 chr11 78262301 78262478 -43581378 - B2_Mm1t SINE B2 -14 179 1 6 1182 815 30 53 0 chr11 78262698 78262829 -43581027 + (TC)n Simple_repeat Simple_repeat 2 139 0 6 1182 329 289 103 26 chr11 78262925 78263075 -43580781 + RMER15 LTR ERVL 343 504 -71 6 1182 607 183 70 0 chr11 78263075 78263190 -43580666 + RLTR18B LTR ERVK 1 123 -389 6 1182 1040 85 152 0 chr11 78263215 78263379 -43580477 - B2_Mm2 SINE B2 0 195 7 6 1182 564 178 19 9 chr11 78263365 78263473 -43580383 - PB1D9 SINE Alu -11 109 1 6 1182 1147 254 68 89 chr11 78263488 78263869 -43579987 + RLTR18B LTR ERVK 140 512 0 6 1182 291 138 121 0 chr11 78263869 78263927 -43579929 + RMER15 LTR ERVL 498 562 -13 6 1182 1388 86 16 11 chr11 78264155 78264343 -43579513 - B2_Mm2 SINE B2 -6 189 1 6 1182 226 203 188 0 chr11 78264390 78264459 -43579397 + 4.5SRNA scRNA scRNA 7 88 -6 6 1182 423 171 49 0 chr11 78264404 78264486 -43579370 + PB1D10 SINE Alu 32 117 0 6 1182 436 243 192 26 chr11 78264489 78264645 -43579211 + B3A SINE B2 1 182 -16 6 1182 4344 64 33 11 chr11 78264822 78265393 -43578463 - MT2B2 LTR ERVL 0 584 1 6 1182 591 214 87 0 chr11 78266522 78266648 -43577208 - B4A SINE B4 -50 242 106 6 1182 442 287 89 8 chr11 78267035 78267158 -43576698 - RSINE1 SINE B4 -31 134 2 6 1182 311 200 0 0 chr11 78267215 78267265 -43576591 + B1F1 SINE Alu 95 144 -5 7 1182 906 154 58 37 chr11 78267289 78267478 -43576378 - B2_Mm2 SINE B2 -1 194 2 7 1182 25 51 0 0 chr11 78267478 78267517 -43576339 + AT_rich Low_complexity Low_complexity 1 39 0 7 1182 463 241 26 9 chr11 78267527 78267640 -43576216 - PB1D7 SINE Alu -1 119 5 7 1182 258 32 0 0 chr11 78267665 78267696 -43576160 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1182 439 198 0 79 chr11 78267696 78267822 -43576034 - PB1D9 SINE Alu -3 117 2 7 1182 198 208 0 0 chr11 78268437 78268485 -43575371 + CT-rich Low_complexity Low_complexity 1 48 0 7 1182 848 281 30 8 chr11 78268493 78268713 -43575143 - ID_B1 SINE B4 -46 246 21 7 1182 798 151 64 7 chr11 78268766 78268906 -43574950 - B1_Mus1 SINE Alu 0 148 1 7 1182 956 230 29 5 chr11 78268926 78269131 -43574725 - B3 SINE B2 -5 211 2 7 1182 469 290 45 45 chr11 78269324 78269501 -43574355 + B3A SINE B2 6 182 -16 7 1182 189 0 0 0 chr11 78269518 78269539 -43574317 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1182 198 0 0 0 chr11 78270449 78270471 -43573385 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 1182 470 158 243 27 chr11 78270475 78270576 -43573280 + B1_Mus1 SINE Alu 12 139 -9 7 1182 186 43 0 0 chr11 78270576 78270599 -43573257 + (CAGAA)n Simple_repeat Simple_repeat 4 26 0 7 1182 1254 48 0 0 chr11 78270646 78270793 -43573063 - B1_Mus2 SINE Alu 0 147 1 7 1182 321 294 125 16 chr11 78270847 78271048 -43572808 + L1MEf LINE L1 2193 2478 -4624 7 1182 1747 228 36 109 chr11 78271322 78271854 -43572002 - RMER5 LTR ERV1 -37 497 5 7 1182 1240 95 34 0 chr11 78271977 78272156 -43571700 - B2_Mm2 SINE B2 -8 187 3 7 1182 1013 253 38 42 chr11 78272260 78272292 -43571564 + ORR1D2 LTR MaLR 78 105 -265 7 1182 995 141 212 0 chr11 78272292 78272476 -43571380 - URR1B DNA MER1_type 0 225 3 7 1182 1013 253 38 42 chr11 78272476 78272732 -43571124 + ORR1D2 LTR MaLR 106 365 -5 7 1182 935 115 23 0 chr11 78273023 78273153 -43570703 + B1_Mur4 SINE Alu 1 133 -17 7 1182 473 69 343 29 chr11 78273153 78273258 -43570598 - B2_Mm2 SINE B2 -11 184 47 7 1182 1290 87 35 0 chr11 78273343 78273516 -43570340 - B2_Mm1t SINE B2 -14 179 1 7 1182 1243 99 60 6 chr11 78273520 78273702 -43570154 - B2_Mm2 SINE B2 -3 192 1 7 1182 460 260 66 7 chr11 78273705 78273856 -43570000 - RLTR6-int LTR ERV1 -2691 5087 4928 7 1182 1470 105 11 48 chr11 78274419 78274702 -43569154 + RMER2 LTR ERV1 1 244 -323 7 1182 1584 130 106 39 chr11 78274688 78275141 -43568715 + RMER2 LTR ERV1 94 413 -154 7 1182 306 0 0 0 chr11 78275142 78275176 -43568680 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1182 1044 122 0 7 chr11 78275320 78275469 -43568387 - B1_Mus1 SINE Alu 0 148 1 7 1182 21 36 0 0 chr11 78275469 78275497 -43568359 + AT_rich Low_complexity Low_complexity 1 28 0 7 1182 973 199 35 10 chr11 78275505 78275703 -43568153 - B3 SINE B2 -12 204 2 7 1182 933 240 15 0 chr11 78275783 78275987 -43567869 - B3 SINE B2 -5 211 5 7 1182 246 249 0 52 chr11 78276021 78276087 -43567769 + BC1_Mm scRNA scRNA 1 63 -20 7 1182 340 264 139 24 chr11 78276629 78276910 -43566946 - L2a LINE L2 -278 3148 2832 7 1182 279 0 0 0 chr11 78277948 78277979 -43565877 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 7 1182 300 254 15 0 chr11 78278247 78278314 -43565542 + B1_Mur4 SINE Alu 33 100 -50 7 1182 324 0 0 0 chr11 78278368 78278404 -43565452 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1182 1078 103 0 0 chr11 78278416 78278562 -43565294 - B1_Mus2 SINE Alu 0 147 2 7 1182 267 339 61 18 chr11 78278564 78278577 -43565279 - PB1D9 SINE Alu 0 120 108 7 1182 216 0 0 0 chr11 78278577 78278601 -43565255 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1182 267 339 61 18 chr11 78278601 78278701 -43565155 - PB1D9 SINE Alu -13 107 2 7 1182 302 307 186 10 chr11 78281438 78281632 -43562224 - MLT1C LTR MaLR -8 497 270 7 1182 195 338 0 0 chr11 78282388 78282456 -43561400 + MIRc SINE MIR 114 181 -87 7 1182 308 250 22 11 chr11 78282501 78282590 -43561266 - MIRb SINE MIR -103 165 76 7 1182 562 193 36 16 chr11 78283077 78283205 -43560651 - PB1D10 SINE Alu -9 139 8 7 1182 448 254 74 0 chr11 78283496 78283618 -43560238 + RSINE1 SINE B4 21 151 -14 7 1182 288 292 0 0 chr11 78283644 78283709 -43560147 + B4A SINE B4 81 145 -147 7 1182 500 220 0 27 chr11 78283656 78283768 -43560088 + PB1D10 SINE Alu 8 116 -1 7 1182 1039 174 20 30 chr11 78283771 78283973 -43559883 + B3 SINE B2 3 202 -14 7 1182 231 61 0 0 chr11 78284581 78284614 -43559242 + (TC)n Simple_repeat Simple_repeat 1 33 0 7 1182 483 18 0 0 chr11 78285799 78285855 -43558001 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1182 247 282 150 26 chr11 78287466 78287579 -43556277 + MER5A1 DNA MER1_type 36 162 -4 7 1182 261 0 0 0 chr11 78288629 78288658 -43555198 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1182 1246 20 0 0 chr11 78289348 78289495 -43554361 + B1_Mm SINE Alu 1 147 0 7 1182 364 372 70 67 chr11 78289623 78289954 -43553902 + MER21B LTR ERV1 123 454 -409 7 1182 368 227 70 78 chr11 78289979 78290075 -43553781 + MTD-int LTR MaLR 837 938 -320 7 1182 207 0 0 0 chr11 78290081 78290104 -43553752 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1182 368 227 70 78 chr11 78290104 78290130 -43553726 + MTD-int LTR MaLR 939 964 -294 7 1182 664 189 8 0 chr11 78290130 78290224 -43553632 - B1_Mus1 SINE Alu -24 124 4 7 1182 780 214 143 21 chr11 78290230 78290517 -43553339 + MTD-int LTR MaLR 937 1258 0 7 1182 1203 213 65 17 chr11 78290528 78290885 -43552971 + MTD LTR MaLR 2 385 -36 7 1182 1812 148 126 9 chr11 78290924 78291272 -43552584 - ORR1B1 LTR MaLR -5 389 1 7 1182 251 191 79 0 chr11 78291272 78291331 -43552525 - B4 SINE B4 -86 206 143 7 1182 1073 42 7 40 chr11 78291400 78291550 -43552306 + B1_Mm SINE Alu 2 146 -1 7 1182 1153 49 0 0 chr11 78291713 78291855 -43552001 - B1_Mus2 SINE Alu -5 142 1 7 1182 325 306 35 82 chr11 78292014 78292185 -43551671 + RSINE1 SINE B4 3 165 0 7 1182 760 263 146 44 chr11 78292218 78292512 -43551344 + MTEb LTR MaLR 54 377 -2 7 1182 236 300 44 55 chr11 78292531 78292687 -43551169 + MIRb SINE MIR 80 236 -26 7 1182 311 236 17 43 chr11 78292715 78292830 -43551026 + PB1D10 SINE Alu 5 116 -1 7 1182 522 222 0 0 chr11 78293946 78294045 -43549811 + MTE2b LTR MaLR 1 99 -280 7 1182 1206 262 16 29 chr11 78294049 78294079 -43549777 + MTE2b LTR MaLR 68 91 -288 7 1182 2531 64 3 0 chr11 78294079 78294405 -43549451 - ORR1A2 LTR MaLR 0 327 1 7 1182 1206 262 16 29 chr11 78294405 78294685 -43549171 + MTE2b LTR MaLR 92 374 -5 7 1182 261 0 0 0 chr11 78294768 78294797 -43549059 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1182 1024 242 112 108 chr11 78294798 78295279 -43548577 + RLTR12B LTR ERVK 15 497 -31 7 1182 189 0 0 0 chr11 78295338 78295359 -43548497 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1182 624 287 0 7 chr11 78295364 78295508 -43548348 - RSINE1 SINE B4 -12 153 11 7 1182 497 230 0 80 chr11 78295662 78295799 -43548057 - MER63D DNA AcHobo -647 414 289 7 1182 184 77 0 0 chr11 78295874 78295900 -43547956 + MIRb SINE MIR 23 48 -220 7 1182 785 220 39 17 chr11 78296011 78296191 -43547665 - B3A SINE B2 -14 184 1 7 1182 624 164 34 17 chr11 78296326 78296444 -43547412 - PB1D9 SINE Alu 0 120 1 7 1182 584 286 122 5 chr11 78297412 78297633 -43546223 - Tigger5 DNA MER2_type -2 2404 2158 7 1182 477 279 57 0 chr11 78297675 78297797 -43546059 + ID_B1 SINE B4 81 209 -15 7 1182 432 0 0 0 chr11 78297799 78297847 -43546009 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1182 382 236 88 66 chr11 78297974 78298110 -43545746 + B4A SINE B4 78 216 -76 7 1182 207 0 0 0 chr11 78298110 78298133 -43545723 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1182 595 162 66 7 chr11 78298140 78298277 -43545579 + B1F2 SINE Alu 5 149 0 7 1182 230 309 105 80 chr11 78298144 78298306 -43545550 + B4A SINE B4 94 259 -33 7 1182 216 159 60 60 chr11 78298392 78298459 -43545397 + A-rich Low_complexity Low_complexity 5 71 0 7 1182 862 150 0 0 chr11 78298459 78298599 -43545257 + B1_Mus2 SINE Alu 1 140 -7 7 1182 270 0 0 0 chr11 78298604 78298634 -43545222 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 7 1182 480 216 8 59 chr11 78298744 78298862 -43544994 + PB1D9 SINE Alu 1 112 -8 7 1182 610 114 85 34 chr11 78299220 78299338 -43544518 + B1_Mur4 SINE Alu 25 148 -2 7 1182 469 252 59 0 chr11 78299430 78299565 -43544291 - RSINE1 SINE B4 -21 144 2 7 1182 528 252 14 48 chr11 78299666 78299812 -43544044 - ID_B1 SINE B4 -1 223 83 7 1182 849 265 0 0 chr11 78299843 78300007 -43543849 + B3 SINE B2 2 165 -51 7 1182 348 24 0 0 chr11 78300007 78300048 -43543808 + (CATA)n Simple_repeat Simple_repeat 2 42 0 7 1182 849 265 0 0 chr11 78300048 78300064 -43543792 + B3 SINE B2 166 181 -35 7 1182 290 261 16 83 chr11 78302420 78302541 -43541315 - MIR3 SINE MIR -48 160 48 7 1182 184 293 111 84 chr11 78302599 78302789 -43541067 + L2 LINE L2 2338 2532 -887 7 1182 750 182 28 0 chr11 78302878 78303021 -43540835 - B1_Mur4 SINE Alu -1 149 3 7 1182 700 218 206 0 chr11 78303136 78303306 -43540550 + B3 SINE B2 2 206 -10 7 1182 1239 106 0 6 chr11 78303335 78303515 -43540341 + B2_Mm2 SINE B2 3 181 -14 7 1182 918 111 0 0 chr11 78303534 78303669 -43540187 + B1_Mus1 SINE Alu 2 136 -12 7 1182 336 48 0 0 chr11 78303669 78303711 -43540145 + (CAA)n Simple_repeat Simple_repeat 1 42 0 7 1182 420 158 25 0 chr11 78303838 78303931 -43539925 - B1_Mur1 SINE Alu -6 143 45 7 1182 240 289 68 126 chr11 78304924 78305077 -43538779 + MIRb SINE MIR 44 194 -74 7 1182 704 247 20 40 chr11 78305077 78305279 -43538577 + B3A SINE B2 1 198 0 8 1182 240 289 68 126 chr11 78305279 78305331 -43538525 + MIRb SINE MIR 195 237 -31 7 1182 200 337 11 22 chr11 78305411 78305502 -43538354 - L2a LINE L2 0 3426 3337 8 1182 1572 32 0 0 chr11 78305637 78305825 -43538031 - B2_Mm1a SINE B2 -4 189 2 8 1182 387 0 0 0 chr11 78305897 78305940 -43537916 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1182 270 0 0 0 chr11 78305940 78305970 -43537886 + (GA)n Simple_repeat Simple_repeat 2 31 0 8 1182 187 282 42 0 chr11 78305980 78306051 -43537805 - L2a LINE L2 -364 3062 2989 8 1182 511 90 0 13 chr11 78306556 78306635 -43537221 - B1_Mur4 SINE Alu 0 150 73 8 1182 257 228 117 19 chr11 78306644 78306747 -43537109 + L1ME5 LINE L1 5842 5954 -240 8 1182 358 243 84 0 chr11 78306781 78306813 -43537043 + L1MD LINE L1 3046 3081 -3065 8 1182 927 84 34 40 chr11 78306813 78306961 -43536895 + B1_Mus2 SINE Alu 1 147 0 8 1182 358 243 84 0 chr11 78306961 78307035 -43536821 + L1MD LINE L1 3082 3160 -2986 8 1182 562 101 59 20 chr11 78307059 78307160 -43536696 + B1_Mur4 SINE Alu 46 150 0 8 1182 261 0 0 0 chr11 78307172 78307201 -43536655 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 8 1182 217 316 89 0 chr11 78307208 78307287 -43536569 + B1F SINE Alu 55 140 -9 8 1182 711 71 0 0 chr11 78307288 78307386 -43536470 + (CAGG)n Simple_repeat Simple_repeat 2 99 0 8 1182 927 124 0 0 chr11 78307451 78307596 -43536260 + (GAA)n Simple_repeat Simple_repeat 3 147 0 8 1182 217 337 71 10 chr11 78307847 78307946 -43535910 - L2a LINE L2 -541 2878 2774 8 1182 184 286 16 16 chr11 78308279 78308343 -43535513 - MIR SINE MIR -63 145 82 8 1182 195 311 27 54 chr11 78308383 78308430 -43535426 - MIR3 SINE MIR -6 202 155 8 1182 1134 175 14 19 chr11 78308430 78308640 -43535216 + B3 SINE B2 2 210 -6 8 1182 195 311 27 54 chr11 78308640 78308704 -43535152 - MIR3 SINE MIR -54 154 94 8 1182 206 347 0 0 chr11 78308929 78309004 -43534852 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 8 1182 221 0 0 33 chr11 78310269 78310299 -43533557 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1182 213 39 0 0 chr11 78311035 78311061 -43532795 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1182 1093 204 24 0 chr11 78311918 78312129 -43531727 + B3 SINE B2 1 216 0 8 1182 263 275 122 24 chr11 78312407 78312530 -43531326 - MIRb SINE MIR -38 230 96 8 1182 662 205 13 20 chr11 78314711 78314860 -43528996 + B1_Mur1 SINE Alu 1 148 -1 8 1182 726 126 14 14 chr11 78314867 78315012 -43528844 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 8 1182 1048 95 0 7 chr11 78316246 78316394 -43527462 + B1_Mus1 SINE Alu 2 148 0 8 1182 34 0 0 0 chr11 78316400 78316434 -43527422 + AT_rich Low_complexity Low_complexity 1 34 0 8 1182 1075 75 7 0 chr11 78319756 78319902 -43523954 + B1_Mus2 SINE Alu 1 147 0 8 1182 213 327 0 0 chr11 78320010 78320065 -43523791 + RSINE1 SINE B4 95 149 -16 8 1182 516 255 185 0 chr11 78320179 78320336 -43523520 + B3 SINE B2 1 186 -30 8 1182 292 237 215 0 chr11 78320391 78320484 -43523372 + PB1D9 SINE Alu 3 115 -5 8 1182 1478 117 18 0 chr11 78321413 78321635 -43522221 + URR1A DNA MER1_type 1 226 0 8 1182 202 27 79 26 chr11 78322225 78322263 -43521593 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 8 1182 1390 63 11 0 chr11 78322606 78322797 -43521059 + B2_Mm1t SINE B2 1 193 0 8 1182 424 185 64 18 chr11 78322823 78322933 -43520923 + B2_Mm2 SINE B2 81 195 0 8 1182 464 233 97 0 chr11 78323057 78323160 -43520696 - PB1D9 SINE Alu -1 119 7 8 1182 534 325 12 24 chr11 78323531 78323695 -43520161 - RSINE1 SINE B4 -2 163 2 8 1182 207 0 0 0 chr11 78324083 78324106 -43519750 + (TA)n Simple_repeat Simple_repeat 2 24 0 8 1182 249 337 34 0 chr11 78324341 78324430 -43519426 - B1F SINE Alu -25 124 33 8 1182 23 0 0 0 chr11 78325687 78325710 -43518146 + GC_rich Low_complexity Low_complexity 1 23 0 8 1182 26 50 0 0 chr11 78325739 78325779 -43518077 + GC_rich Low_complexity Low_complexity 1 40 0 8 1182 295 354 10 0 chr11 78326779 78326878 -43516978 - PB1D10 SINE Alu -17 100 1 8 1182 260 317 70 21 chr11 78327703 78327845 -43516011 - B1F1 SINE Alu 0 149 1 8 1182 250 216 162 0 chr11 78328065 78328139 -43515717 + B1F2 SINE Alu 27 112 -8 8 1182 754 179 13 52 chr11 78328794 78328947 -43514909 + B1_Mus2 SINE Alu 1 147 0 8 1182 750 210 118 5 chr11 78329176 78329363 -43514493 - B3 SINE B2 0 216 9 8 1182 262 307 50 50 chr11 78329399 78329519 -43514337 - PB1D9 SINE Alu 0 120 1 8 1182 958 229 24 0 chr11 78329546 78329756 -43514100 - B3 SINE B2 0 216 2 8 1182 1508 42 0 30 chr11 78329768 78329966 -43513890 - B2_Mm1t SINE B2 0 193 2 8 1182 3855 37 10 4 chr11 78330542 78331030 -43512826 + L1Md_F2 LINE L1 6092 6582 0 8 1182 428 208 354 12 chr11 78332999 78333160 -43510696 + ID_B1 SINE B4 1 216 -8 8 1182 328 167 0 0 chr11 78333179 78333233 -43510623 - B3A SINE B2 -143 55 2 8 1182 514 208 96 19 chr11 78333233 78333370 -43510486 + B4 SINE B4 75 223 -69 8 1182 959 53 76 0 chr11 78333241 78333373 -43510483 + B1_Mus2 SINE Alu 6 147 0 8 1182 329 295 0 33 chr11 78333405 78333496 -43510360 + ID_B1 SINE B4 134 221 -3 8 1182 642 226 0 72 chr11 78333506 78333644 -43510212 + RSINE1 SINE B4 3 130 -35 8 1182 342 0 0 0 chr11 78333676 78333714 -43510142 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1182 379 236 120 19 chr11 78333955 78334063 -43509793 + PB1D7 SINE Alu 2 120 0 8 1182 680 185 74 0 chr11 78334132 78334267 -43509589 - B1_Mus2 SINE Alu 0 147 3 8 1182 208 338 179 7 chr11 78334268 78334408 -43509448 + MIR SINE MIR 91 254 -8 8 1182 514 240 30 10 chr11 78334801 78334902 -43508954 + PB1D10 SINE Alu 2 104 -13 8 1182 571 165 66 28 chr11 78337818 78337924 -43505932 - B1F SINE Alu 0 149 40 8 1182 272 235 0 0 chr11 78338157 78338208 -43505648 - ID2 SINE ID -7 76 26 8 1182 357 213 202 0 chr11 78338216 78338310 -43505546 - PB1D10 SINE Alu -2 125 13 8 1182 334 258 61 20 chr11 78339326 78339425 -43504431 - PB1D10 SINE Alu -2 115 13 8 1182 430 208 48 29 chr11 78339542 78339646 -43504210 + PB1D10 SINE Alu 1 106 -11 8 1182 510 220 80 48 chr11 78339659 78339816 -43504040 + RSINE1 SINE B4 1 165 0 8 1182 484 266 78 0 chr11 78340330 78340458 -43503398 + B1F SINE Alu 12 149 0 8 1182 25 31 0 0 chr11 78340458 78340490 -43503366 + AT_rich Low_complexity Low_complexity 1 32 0 8 1182 1203 72 0 0 chr11 78342078 78342258 -43501598 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1182 321 223 63 0 chr11 78343113 78343206 -43500650 - B1F SINE Alu -9 108 3 8 1182 592 261 54 0 chr11 78343207 78343337 -43500519 - ID_B1 SINE B4 -4 220 84 8 1182 1569 210 32 126 chr11 78343959 78344421 -43499435 + MTD LTR MaLR 1 419 0 8 1182 1275 21 0 0 chr11 78345006 78345148 -43498708 + B1_Mus2 SINE Alu 1 142 -5 8 1182 1182 68 0 0 chr11 78345289 78345437 -43498419 - B1_Mus1 SINE Alu 0 148 1 8 1182 958 143 14 0 chr11 78345528 78345675 -43498181 + B1_Mur2 SINE Alu 1 149 0 8 1182 805 272 21 73 chr11 78345680 78345691 -43498165 + MER2 DNA MER2_type 72 82 -263 8 1182 643 165 118 15 chr11 78345691 78345826 -43498030 + B1_Mur3 SINE Alu 1 149 0 8 1182 805 272 21 73 chr11 78345826 78346064 -43497792 + MER2 DNA MER2_type 83 306 -39 8 1182 1386 78 15 25 chr11 78346064 78346261 -43497595 + B2_Mm2 SINE B2 1 195 0 8 1182 805 272 21 73 chr11 78346261 78346299 -43497557 + MER2 DNA MER2_type 307 344 -1 8 1182 575 226 51 7 chr11 78346312 78346450 -43497406 - B1_Mur2 SINE Alu -5 144 1 8 1182 300 198 19 16 chr11 78346480 78346552 -43497304 + PB1D7 SINE Alu 1 67 -80 8 1182 642 238 23 8 chr11 78346591 78346722 -43497134 + ID_B1 SINE B4 12 144 -80 8 1182 223 280 106 11 chr11 78346668 78346762 -43497094 + PB1D9 SINE Alu 9 111 -9 8 1182 198 0 0 0 chr11 78346762 78346784 -43497072 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 8 1182 248 216 20 0 chr11 78347002 78347053 -43496803 - L2a LINE L2 -87 3339 3288 8 1182 269 186 23 0 chr11 78347054 78347097 -43496759 + PB1D9 SINE Alu 1 44 -76 8 1182 882 70 89 14 chr11 78347345 78347491 -43496365 + B2_Mm2 SINE B2 39 195 0 8 1182 1579 32 38 0 chr11 78347522 78347708 -43496148 + B2_Mm1a SINE B2 1 193 0 8 1182 541 236 39 73 chr11 78347753 78347931 -43495925 + B3 SINE B2 41 212 -4 8 1182 1248 192 10 0 chr11 78347947 78348150 -43495706 + B3 SINE B2 1 205 -11 8 1182 250 284 231 0 chr11 78348307 78348441 -43495415 - L2a LINE L2 -569 2850 2686 8 1182 1206 48 7 7 chr11 78350928 78351075 -43492781 + B1_Mus2 SINE Alu 1 147 0 8 1182 487 269 56 21 chr11 78351622 78351766 -43492090 - B1F SINE Alu 0 149 1 8 1182 565 179 30 82 chr11 78351987 78352121 -43491735 + L2c LINE L2 3259 3385 -2 8 1182 449 248 35 17 chr11 78352958 78353073 -43490783 - PB1D10 SINE Alu 0 117 1 8 1182 721 208 128 23 chr11 78353686 78353858 -43489998 - B3 SINE B2 -25 191 2 8 1182 979 194 23 41 chr11 78353864 78354084 -43489772 - B3 SINE B2 0 216 1 8 1182 252 0 0 0 chr11 78354975 78355003 -43488853 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1182 607 172 194 8 chr11 78356634 78356763 -43487093 - B3 SINE B2 -26 190 38 8 1182 240 103 154 0 chr11 78356797 78356836 -43487020 - B3 SINE B2 -171 45 1 8 1182 1090 168 26 0 chr11 78357287 78357477 -43486379 - URR1B DNA MER1_type -30 195 1 8 1182 392 309 24 91 chr11 78357477 78357510 -43486346 + CYRA11_Mm Unknown Y-chromosome 396 414 -203 8 1182 1145 35 43 0 chr11 78357906 78358047 -43485809 + B1_Mus2 SINE Alu 1 147 0 8 1182 186 71 0 0 chr11 78358047 78358075 -43485781 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1182 264 280 47 65 chr11 78358262 78358284 -43485572 + B1_Mm SINE Alu 42 146 -1 9 1182 372 294 0 0 chr11 78358284 78358369 -43485487 + ID_B1 SINE B4 137 221 -3 9 1182 311 196 100 108 chr11 78358527 78358647 -43485209 + PB1D7 SINE Alu 2 120 0 9 1182 199 293 69 0 chr11 78358820 78358878 -43484978 + MIR3 SINE MIR 94 155 -53 9 1182 252 291 151 0 chr11 78358902 78358988 -43484868 - PB1D10 SINE Alu -7 110 12 9 1182 253 308 10 90 chr11 78360042 78360142 -43483714 + B4 SINE B4 2 93 -199 9 1182 3770 144 40 109 chr11 78360297 78360412 -43483444 + RMER6A LTR ERVK 1 62 -694 9 1182 1039 66 73 0 chr11 78360412 78360549 -43483307 - B1_Mus2 SINE Alu 0 147 1 9 1182 4866 53 0 2 chr11 78360550 78361138 -43482718 - L1_Mus1 LINE L1 -9 6558 5972 9 1182 3770 144 40 109 chr11 78361138 78361821 -43482035 + RMER6A LTR ERVK 63 746 -10 9 1182 497 257 65 22 chr11 78361867 78362006 -43481850 + B1_Mur2 SINE Alu 5 149 0 9 1182 210 91 34 68 chr11 78362225 78362284 -43481572 + (CAAAC)n Simple_repeat Simple_repeat 3 59 0 9 1182 376 268 171 65 chr11 78362478 78362865 -43480991 + MLT1D LTR MaLR 75 502 -3 9 1182 354 244 26 0 chr11 78362889 78362967 -43480889 - ID4_ SINE ID -3 80 1 9 1182 294 210 113 0 chr11 78363854 78363916 -43479940 - ID4 SINE ID -14 69 1 9 1182 236 341 35 0 chr11 78364755 78364840 -43479016 + ID SINE ID 2 89 -135 9 1182 291 254 145 26 chr11 78364821 78364938 -43478918 + B1_Mur3 SINE Alu 17 147 -2 9 1182 673 171 77 8 chr11 78365276 78365406 -43478450 - B1_Mur2 SINE Alu -7 142 4 9 1182 218 156 0 22 chr11 78366270 78366316 -43477540 + CT-rich Low_complexity Low_complexity 3 47 0 9 1182 468 103 59 0 chr11 78366332 78366400 -43477456 - B1_Mus2 SINE Alu -2 145 74 9 1182 4185 137 193 39 chr11 78366402 78366520 -43477336 + RLTR25B LTR ERVK 1 121 -907 9 1182 369 0 0 0 chr11 78366520 78366561 -43477295 + (TA)n Simple_repeat Simple_repeat 1 41 0 9 1182 4185 137 193 39 chr11 78366561 78367333 -43476523 + RLTR25B LTR ERVK 122 1028 0 9 1182 278 179 283 9 chr11 78367757 78367870 -43475986 - B2_Mm2 SINE B2 -4 191 48 9 1182 1034 110 40 73 chr11 78367903 78368080 -43475776 - B2_Mm2 SINE B2 -14 181 11 9 1182 226 372 0 0 chr11 78368011 78368089 -43475767 - RSINE1 SINE B4 -85 80 3 9 1182 472 156 43 22 chr11 78368525 78368617 -43475239 + RLTR25A LTR ERVK 1010 1103 0 9 1182 365 208 52 0 chr11 78368617 78368691 -43475165 - B1_Mur4 SINE Alu -71 79 2 9 1182 266 0 29 0 chr11 78368709 78368743 -43475113 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1182 257 149 0 60 chr11 78369485 78369535 -43474321 - B1_Mus2 SINE Alu 0 147 101 9 1182 543 281 26 64 chr11 78369542 78369698 -43474158 - B3A SINE B2 -48 150 1 9 1182 420 328 80 0 chr11 78370220 78370345 -43473511 + ID_B1 SINE B4 84 218 -6 9 1182 1351 83 17 0 chr11 78370355 78370536 -43473320 + B2_Mm1a SINE B2 1 184 -9 9 1182 556 198 81 24 chr11 78371502 78371626 -43472230 - B1_Mur2 SINE Alu -18 131 1 9 1182 797 170 0 78 chr11 78371681 78371834 -43472022 - B1_Mur4 SINE Alu -9 141 1 9 1182 965 252 107 0 chr11 78371941 78372251 -43471605 - Lx8 LINE L1 -137 7336 6994 9 1182 304 260 14 0 chr11 78372358 78372431 -43471425 + Lx8 LINE L1 6095 6168 -1305 9 1182 1222 41 0 7 chr11 78372437 78372583 -43471273 - B1_Mus1 SINE Alu -1 147 3 9 1182 1471 75 16 0 chr11 78372590 78372777 -43471079 - B2_Mm2 SINE B2 -4 191 2 9 1182 828 161 43 7 chr11 78372815 78372953 -43470903 + B1_Mur1 SINE Alu 6 148 -1 9 1182 2244 230 79 26 chr11 78372995 78373612 -43470244 + Lx8 LINE L1 6197 6846 -627 9 1182 394 293 10 0 chr11 78373709 78373808 -43470048 - RSINE1 SINE B4 -64 101 2 9 1182 263 318 146 8 chr11 78373814 78373944 -43469912 - MER58B DNA MER1_type -18 323 176 9 1182 252 338 44 56 chr11 78374016 78374176 -43469680 - MLT1J1 LTR MaLR -233 211 54 9 1182 501 285 23 8 chr11 78374403 78374534 -43469322 + ID_B1 SINE B4 86 218 -6 9 1182 252 0 0 0 chr11 78374735 78374763 -43469093 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1182 775 172 24 118 chr11 78375352 78375563 -43468293 - B2_Mm2 SINE B2 -3 192 2 9 1182 291 244 300 0 chr11 78375862 78375952 -43467904 + PB1D10 SINE Alu 1 117 0 9 1182 354 197 0 0 chr11 78375965 78376026 -43467830 + B3 SINE B2 1 61 -155 9 1182 251 351 13 0 chr11 78376083 78376160 -43467696 + ID SINE ID 2 79 -145 9 1182 229 195 96 0 chr11 78376333 78376395 -43467461 - PB1D10 SINE Alu 0 149 63 9 1182 359 275 138 10 chr11 78376395 78376590 -43467266 - L1MB4 LINE L1 -300 5880 5661 9 1182 686 181 48 86 chr11 78376633 78376820 -43467036 - B3A SINE B2 -16 182 3 9 1182 645 250 74 33 chr11 78376947 78377162 -43466694 - Charlie2a DNA MER1_type -1143 1718 1495 9 1182 198 0 0 0 chr11 78377347 78377369 -43466487 + (CAG)n Simple_repeat Simple_repeat 2 23 0 9 1182 805 204 96 35 chr11 78377429 78377627 -43466229 + B3 SINE B2 1 210 -6 9 1182 600 286 8 0 chr11 78377653 78377786 -43466070 + RSINE1 SINE B4 3 136 -29 9 1182 827 173 53 0 chr11 78377825 78377958 -43465898 + B1_Mur1 SINE Alu 2 141 -8 9 1182 21 36 0 0 chr11 78378066 78378094 -43465762 + GC_rich Low_complexity Low_complexity 1 28 0 9 1182 804 174 8 0 chr11 78378094 78378226 -43465630 - B1_Mur3 SINE Alu -16 133 1 9 1182 310 254 0 0 chr11 78378248 78378319 -43465537 - ID4 SINE ID -11 72 2 9 1182 1116 93 0 0 chr11 78378354 78378493 -43465363 - B1_Mus1 SINE Alu -9 139 1 9 1182 1060 215 34 0 chr11 78378528 78378737 -43465119 - B3 SINE B2 0 216 1 9 1182 1368 45 5 43 chr11 78378737 78378752 -43465104 - B2_Mm1t SINE B2 -22 171 161 9 1182 333 0 0 0 chr11 78378752 78378789 -43465067 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 9 1182 1368 45 5 43 chr11 78378789 78378949 -43464907 - B2_Mm1t SINE B2 -33 160 1 9 1182 642 250 46 31 chr11 78378956 78379150 -43464706 - B3A SINE B2 -1 197 1 9 1182 303 213 216 24 chr11 78379474 78379599 -43464257 + B1F SINE Alu 1 149 0 9 1182 1378 79 10 10 chr11 78379608 78379800 -43464056 + B2_Mm1t SINE B2 2 193 0 9 1182 352 271 19 9 chr11 78379869 78379977 -43463879 + PB1D10 SINE Alu 1 109 -8 9 1182 221 283 100 0 chr11 78380075 78380135 -43463721 + ID SINE ID 5 70 -154 9 1182 213 39 0 0 chr11 78380882 78380908 -43462948 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 1183 23 68 0 0 chr11 78381493 78381537 -43462319 + AT_rich Low_complexity Low_complexity 1 44 0 9 1183 189 74 0 0 chr11 78381735 78381762 -43462094 + (TA)n Simple_repeat Simple_repeat 1 27 0 9 1183 28 0 0 0 chr11 78382080 78382108 -43461748 + AT_rich Low_complexity Low_complexity 1 28 0 9 1183 218 220 60 0 chr11 78382703 78382753 -43461103 + MIR SINE MIR 158 210 -52 9 1183 272 310 88 83 chr11 78383336 78383540 -43460316 + LTR41 LTR ERVL 92 296 -472 9 1183 376 257 56 19 chr11 78383854 78383961 -43459895 + PB1D7 SINE Alu 10 120 0 9 1183 342 0 0 0 chr11 78384309 78384347 -43459509 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 9 1183 523 276 38 38 chr11 78384347 78384425 -43459431 - ID_B1 SINE B4 -12 212 135 9 1183 1631 37 16 0 chr11 78384425 78384616 -43459240 - B2_Mm2 SINE B2 -1 194 1 9 1183 523 276 38 38 chr11 78384616 78384669 -43459187 - ID_B1 SINE B4 -90 134 82 9 1183 447 263 0 39 chr11 78384732 78384835 -43459021 + RSINE1 SINE B4 8 106 -59 9 1183 246 62 0 0 chr11 78384866 78384898 -43458958 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 9 1183 325 292 110 42 chr11 78386643 78386761 -43457095 - ID_B1 SINE B4 -17 207 82 9 1183 532 180 197 0 chr11 78386796 78386918 -43456938 - B1_Mur3 SINE Alu -3 146 1 9 1183 1485 52 5 30 chr11 78386987 78387184 -43456672 + B2_Mm1a SINE B2 2 193 0 9 1183 1610 27 27 0 chr11 78387758 78387945 -43455911 + B2_Mm1a SINE B2 2 193 0 9 1183 192 77 0 0 chr11 78387965 78387991 -43455865 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1183 30 27 0 0 chr11 78388015 78388052 -43455804 + AT_rich Low_complexity Low_complexity 1 37 0 9 1183 443 283 9 0 chr11 78388071 78388177 -43455679 + B3 SINE B2 5 111 -105 9 1183 502 220 0 29 chr11 78388212 78388315 -43455541 + B3 SINE B2 116 215 -1 9 1183 743 211 38 0 chr11 78388520 78388653 -43455203 + B1_Mur1 SINE Alu 1 138 -11 9 1183 234 322 64 89 chr11 78389311 78389468 -43454388 + MLT1K LTR MaLR 64 216 -379 9 1183 314 172 180 70 chr11 78389563 78389663 -43454193 - B1F2 SINE Alu -37 112 2 9 1183 1266 52 119 23 chr11 78390418 78390594 -43453262 + B2_Mm2 SINE B2 2 194 -1 9 1183 1376 186 149 22 chr11 78391393 78391766 -43452090 + MTD LTR MaLR 1 405 -14 9 1183 730 320 65 49 chr11 78391976 78392239 -43451617 + B4 SINE B4 26 292 0 9 1183 897 146 53 35 chr11 78392325 78392495 -43451361 + B2_Mm2 SINE B2 1 173 -22 9 1183 268 307 7 20 chr11 78392888 78392971 -43450885 - B1_Mur1 SINE Alu -1 148 41 9 1183 355 256 0 23 chr11 78393010 78393098 -43450758 - PB1D10 SINE Alu -15 102 17 9 1183 702 178 17 0 chr11 78393161 78393279 -43450577 - PB1D9 SINE Alu 0 120 1 9 1183 323 100 310 60 chr11 78393289 78393405 -43450451 - B2_Mm2 SINE B2 -4 191 47 9 1183 1330 102 11 0 chr11 78393452 78393628 -43450228 - B2_Mm1t SINE B2 -14 179 2 9 1183 31 44 0 0 chr11 78393693 78393738 -43450118 + AT_rich Low_complexity Low_complexity 1 45 0 9 1183 332 336 57 57 chr11 78393744 78393828 -43450028 - B4A SINE B4 -62 230 4 1 1183 333 167 0 36 chr11 78393788 78393844 -43450012 + B1_Mur1 SINE Alu 63 116 -33 1 1183 715 225 0 35 chr11 78393828 78393971 -43449885 - B3A SINE B2 -57 141 4 1 1183 401 306 24 24 chr11 78394131 78394258 -43449598 - RSINE1 SINE B4 0 165 39 1 1183 594 0 0 0 chr11 78394727 78394793 -43449063 + (TTTCC)n Simple_repeat Simple_repeat 3 68 0 1 1183 1138 69 0 0 chr11 78395484 78395629 -43448227 + B2_Mm2 SINE B2 1 145 -50 1 1183 255 93 0 0 chr11 78395647 78395690 -43448166 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1183 474 297 55 49 chr11 78395690 78395853 -43448003 + B3A SINE B2 28 191 -7 1 1183 290 219 179 24 chr11 78395973 78396057 -43447799 + B1_Mur4 SINE Alu 53 149 -1 1 1183 240 337 83 12 chr11 78397112 78397196 -43446660 + B4A SINE B4 83 172 -120 1 1183 448 212 16 62 chr11 78398273 78398401 -43445455 - B3 SINE B2 -12 204 72 1 1183 23 33 0 0 chr11 78398431 78398461 -43445395 + AT_rich Low_complexity Low_complexity 1 30 0 1 1183 663 218 8 31 chr11 78398474 78398602 -43445254 - B1_Mur2 SINE Alu -15 134 10 1 1183 277 352 55 18 chr11 78398507 78398617 -43445239 - B4 SINE B4 -98 194 81 1 1183 21 0 0 0 chr11 78398624 78398645 -43445211 + AT_rich Low_complexity Low_complexity 1 21 0 1 1183 611 324 32 32 chr11 78399133 78399321 -43444535 - B3A SINE B2 -1 197 10 1 1183 464 165 11 0 chr11 78399344 78399435 -43444421 + CT-rich Low_complexity Low_complexity 2 93 0 1 1183 674 182 66 0 chr11 78399435 78399556 -43444300 - B1_Mus1 SINE Alu -5 143 15 1 1183 619 232 13 60 chr11 78399578 78399729 -43444127 - B1_Mur1 SINE Alu -5 144 1 1 1183 570 179 17 17 chr11 78399748 78399867 -43443989 - B2_Mm2 SINE B2 -26 169 51 1 1183 273 282 41 91 chr11 78400628 78400646 -43443210 - PB1D9 SINE Alu 0 120 6 1 1183 440 291 19 0 chr11 78400646 78400749 -43443107 - ID_B1 SINE B4 -33 191 87 1 1183 1325 218 110 14 chr11 78400756 78401110 -43442746 + MTD LTR MaLR 2 389 -30 1 1183 33 0 0 0 chr11 78401110 78401143 -43442713 + AT_rich Low_complexity Low_complexity 1 33 0 1 1183 1451 89 0 45 chr11 78401143 78401169 -43442687 - B2_Mm2 SINE B2 -3 192 173 1 1183 1191 60 0 0 chr11 78401169 78401303 -43442553 + B1_Mus1 SINE Alu 2 135 -13 1 1183 180 0 0 0 chr11 78401303 78401323 -43442533 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1183 1451 89 0 45 chr11 78401323 78401496 -43442360 - B2_Mm2 SINE B2 -23 172 2 1 1183 729 234 0 0 chr11 78401771 78401899 -43441957 - B3 SINE B2 -7 209 82 1 1183 409 218 13 0 chr11 78401930 78402008 -43441848 + ID4 SINE ID 3 81 -2 1 1183 531 97 5 0 chr11 78402193 78402282 -43441574 - B1_Mm SINE Alu -2 147 57 1 1183 343 220 0 0 chr11 78402449 78402508 -43441348 + B1_Mur1 SINE Alu 79 137 -12 1 1183 549 0 0 0 chr11 78402510 78402571 -43441285 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1183 189 0 0 0 chr11 78402895 78402916 -43440940 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1183 216 0 0 0 chr11 78402965 78402989 -43440867 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1183 184 296 116 22 chr11 78405410 78405548 -43438308 + L2 LINE L2 2150 2300 -1119 1 1183 232 317 130 0 chr11 78405575 78405698 -43438158 + L2 LINE L2 2549 2687 -732 1 1183 523 199 38 2 chr11 78405947 78406053 -43437803 - PB1D9 SINE Alu 0 120 12 1 1183 313 298 101 53 chr11 78406344 78406532 -43437324 + L1MC5 LINE L1 7715 7911 -50 1 1183 381 288 68 61 chr11 78406667 78406815 -43437041 + RMER10B LTR ERVL 193 341 -57 1 1183 516 282 57 0 chr11 78406837 78406961 -43436895 - ID_B1 SINE B4 -12 212 82 1 1183 230 167 18 53 chr11 78407444 78407501 -43436355 - HAL1 LINE L1 -2182 325 271 1 1183 353 259 107 49 chr11 78407837 78407935 -43435921 - ID_B1 SINE B4 -76 148 44 1 1183 1513 156 98 16 chr11 78407935 78408241 -43435615 + MTC LTR MaLR 1 331 -90 1 1183 340 242 105 57 chr11 78408497 78408602 -43435254 - PB1D10 SINE Alu -7 110 1 1 1183 674 257 194 23 chr11 78408714 78409024 -43434832 + MLT1A0 LTR MaLR 3 365 0 1 1183 292 279 25 25 chr11 78409379 78409460 -43434396 - B3A SINE B2 -99 99 19 1 1183 303 140 0 0 chr11 78409506 78409556 -43434300 + (TAG)n Simple_repeat Simple_repeat 2 51 0 1 1183 461 262 129 18 chr11 78411266 78411437 -43432419 - B3A SINE B2 -7 191 2 1 1183 193 229 0 0 chr11 78411445 78411480 -43432376 - MIR SINE MIR -158 50 16 1 1183 607 172 341 5 chr11 78411555 78411756 -43432100 - MTD LTR MaLR -14 405 133 1 1183 738 190 233 11 chr11 78411840 78412016 -43431840 + B3 SINE B2 2 216 0 1 1183 1298 119 0 49 chr11 78412289 78412492 -43431364 + B2_Mm2 SINE B2 1 193 -2 1 1183 254 271 0 28 chr11 78412665 78412737 -43431119 + BC1_Mm scRNA scRNA 2 71 -81 1 1183 392 269 43 29 chr11 78412781 78412919 -43430937 + B1F SINE Alu 5 144 -5 1 1183 1260 71 6 0 chr11 78413264 78413434 -43430422 + B2_Mm1t SINE B2 16 186 -7 1 1183 1285 48 0 0 chr11 78413512 78413658 -43430198 + B1_Mus1 SINE Alu 1 146 -2 1 1183 193 364 81 40 chr11 78414532 78414681 -43429175 - MIR3 SINE MIR -38 170 16 1 1183 361 289 194 2 chr11 78414793 78414975 -43428881 + MIRb SINE MIR 18 237 -31 1 1183 230 290 14 55 chr11 78415109 78415182 -43428674 - MIRb SINE MIR -154 114 45 1 1183 803 279 11 16 chr11 78415597 78415783 -43428073 - B3 SINE B2 -5 211 27 1 1183 383 142 35 28 chr11 78415804 78415902 -43427954 - B1_Mus2 SINE Alu 0 150 48 1 1183 978 148 54 43 chr11 78416070 78416254 -43427602 + B2_Mm2 SINE B2 2 187 -8 1 1183 274 217 129 14 chr11 78416586 78416656 -43427200 - B1_Mus1 SINE Alu -37 111 34 1 1183 427 211 221 24 chr11 78417876 78418038 -43425818 - B3 SINE B2 -21 195 2 1 1183 577 135 0 33 chr11 78418082 78418174 -43425682 + B3 SINE B2 3 91 -125 1 1183 1967 156 199 9 chr11 78418181 78418629 -43425227 + RMER4B LTR ERVK 52 585 0 1 1183 214 209 0 0 chr11 78419211 78419254 -43424602 + B3A SINE B2 90 132 -66 1 1183 994 159 0 0 chr11 78419324 78419469 -43424387 + B1_Mur3 SINE Alu 5 149 0 1 1183 683 235 94 0 chr11 78419496 78419645 -43424211 + B3A SINE B2 2 164 -34 1 1183 351 336 47 6 chr11 78419724 78419904 -43423952 + B3A SINE B2 1 192 -1 1 1183 711 220 226 24 chr11 78419968 78420296 -43423560 + Lx8 LINE L1 7073 7466 -7 1 1183 448 313 52 11 chr11 78420423 78420609 -43423247 - MIR SINE MIR -66 202 14 1 1183 381 244 23 33 chr11 78420782 78420891 -43422965 + PB1D7 SINE Alu 2 120 0 1 1183 260 178 40 14 chr11 78420891 78420965 -43422891 + A-rich Low_complexity Low_complexity 1 76 0 1 1183 701 265 43 22 chr11 78421099 78421284 -43422572 + B4 SINE B4 41 229 -63 1 1183 635 152 110 16 chr11 78421291 78421418 -43422438 + B1_Mur4 SINE Alu 11 149 -1 1 1183 183 139 0 0 chr11 78421418 78421454 -43422402 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1183 180 0 0 0 chr11 78421674 78421694 -43422162 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1183 714 210 50 7 chr11 78421796 78421935 -43421921 + B1_Mur1 SINE Alu 1 145 -4 1 1183 1079 110 7 0 chr11 78422199 78422345 -43421511 - B1_Mus2 SINE Alu 0 147 1 1 1183 343 251 34 34 chr11 78422522 78422636 -43421220 + B1F SINE Alu 1 114 -6 1 1183 284 260 0 110 chr11 78422758 78422840 -43421016 - RSINE1 SINE B4 0 165 93 1 1183 734 203 29 7 chr11 78423572 78423711 -43420145 + B3A SINE B2 1 142 -56 1 1183 261 0 0 0 chr11 78423719 78423748 -43420108 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1183 757 245 176 0 chr11 78423774 78423962 -43419894 + ID_B1 SINE B4 2 222 -2 1 1183 234 264 206 11 chr11 78424125 78424217 -43419639 + B1F SINE Alu 38 147 -2 1 1183 1229 55 0 14 chr11 78424333 78424481 -43419375 + B1_Mus2 SINE Alu 2 147 0 1 1183 596 234 75 43 chr11 78424513 78424674 -43419182 + ID_B1 SINE B4 49 214 -10 1 1183 1066 178 75 15 chr11 78425747 78425947 -43417909 - B3 SINE B2 0 216 5 1 1183 395 276 106 2 chr11 78426312 78426428 -43417428 - PB1D10 SINE Alu -22 127 3 1 1183 274 266 68 0 chr11 78426538 78426627 -43417229 - L2a LINE L2 -6 3420 3273 1 1183 1179 75 14 0 chr11 78426688 78426834 -43417022 + B1_Mus1 SINE Alu 1 148 0 1 1183 432 224 206 8 chr11 78427469 78427595 -43416261 + RSINE1 SINE B4 2 152 -13 1 1183 256 146 0 0 chr11 78427971 78428012 -43415844 - ID_B1 SINE B4 -9 215 175 1 1183 546 250 60 0 chr11 78428012 78428128 -43415728 - B3A SINE B2 -75 123 1 1 1183 242 228 18 0 chr11 78428294 78428351 -43415505 + GA-rich Low_complexity Low_complexity 3 60 0 1 1183 397 316 100 103 chr11 78428509 78428848 -43415008 - MER2 DNA MER2_type -7 338 1 1 1183 1345 277 86 67 chr11 78429279 78429789 -43414067 + MER77 LTR ERVL 88 607 0 1 1183 344 191 0 11 chr11 78430135 78430225 -43413631 + CT-rich Low_complexity Low_complexity 4 92 0 1 1183 512 284 52 0 chr11 78430233 78430349 -43413507 - B1F1 SINE Alu -26 123 2 1 1183 310 270 0 31 chr11 78430294 78430359 -43413497 - B4A SINE B4 -151 141 79 1 1183 243 280 0 0 chr11 78430377 78430427 -43413429 - MER77 LTR ERVL -444 163 114 1 1183 468 278 96 36 chr11 78431094 78431314 -43412542 + MIR SINE MIR 5 237 -25 1 1183 188 329 51 26 chr11 78432302 78432380 -43411476 - L2b LINE L2 -213 3162 3083 1 1183 414 218 0 65 chr11 78432808 78432916 -43410940 - PB1D9 SINE Alu -19 101 1 1 1183 23 33 0 0 chr11 78433094 78433124 -43410732 + AT_rich Low_complexity Low_complexity 1 30 0 1 1183 1248 74 0 0 chr11 78433266 78433414 -43410442 - B1_Mus1 SINE Alu 0 148 1 1 1183 534 300 24 30 chr11 78433442 78433607 -43410249 - RSINE1 SINE B4 0 165 2 1 1183 372 77 0 0 chr11 78433654 78433706 -43410150 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 1 1183 456 229 27 18 chr11 78433714 78433825 -43410031 - PB1D9 SINE Alu -7 113 2 1 1183 751 193 2 76 chr11 78433845 78434018 -43409838 - B2_Mm2 SINE B2 -27 166 1 1 1183 305 367 23 0 chr11 78434093 78434221 -43409635 + B1F SINE Alu 3 133 -16 1 1183 398 248 100 9 chr11 78434233 78434343 -43409513 - PB1D9 SINE Alu 0 120 1 1 1183 504 242 103 28 chr11 78434563 78434736 -43409120 - B3 SINE B2 -3 192 1 1 1183 725 210 29 7 chr11 78434764 78434903 -43408953 + B1_Mur1 SINE Alu 2 143 -6 1 1183 658 181 147 0 chr11 78434913 78435029 -43408827 + B1_Mus1 SINE Alu 1 133 -15 1 1183 266 0 29 0 chr11 78435035 78435069 -43408787 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1183 234 146 83 0 chr11 78435586 78435634 -43408222 - MT2B LTR ERVL -251 350 299 1 1183 458 156 99 11 chr11 78436018 78436109 -43407747 + B1_Mur1 SINE Alu 36 134 -15 1 1183 228 241 0 53 chr11 78436100 78436115 -43407741 + B4 SINE B4 70 84 -208 1 1183 252 0 0 0 chr11 78436115 78436143 -43407713 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1183 228 241 0 53 chr11 78436143 78436184 -43407672 + B4 SINE B4 85 123 -169 1 1183 445 168 202 9 chr11 78436145 78436187 -43407669 + B1_Mus1 SINE Alu 1 55 -93 1 1183 195 42 0 0 chr11 78436187 78436211 -43407645 + (CAGAGA)n Simple_repeat Simple_repeat 3 26 0 1 1183 445 168 202 9 chr11 78436211 78436282 -43407574 + B1_Mus1 SINE Alu 56 135 -13 1 1183 314 258 135 16 chr11 78436342 78436468 -43407388 - RSINE1 SINE B4 -22 143 3 1 1183 274 318 106 0 chr11 78436486 78436671 -43407185 - L1M5 LINE L1 -295 5867 5652 1 1183 295 331 33 8 chr11 78436714 78436836 -43407020 - L1M5 LINE L1 -1065 5081 4957 1 1183 242 314 14 0 chr11 78436934 78437004 -43406852 - MER5B DNA MER1_type -42 136 66 1 1183 236 320 107 0 chr11 78437307 78437410 -43406446 + MIRb SINE MIR 129 242 -26 1 1183 189 0 0 0 chr11 78437463 78437484 -43406372 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1183 390 236 80 58 chr11 78437484 78437609 -43406247 - B1_Mur1 SINE Alu -13 136 9 1 1183 296 206 15 45 chr11 78438511 78438577 -43405279 - ID4 SINE ID -8 75 12 1 1183 220 200 38 125 chr11 78438513 78438593 -43405263 - B3A SINE B2 -124 74 2 1 1183 470 257 30 0 chr11 78438624 78438725 -43405131 + PB1D7 SINE Alu 12 115 -5 1 1183 424 121 286 0 chr11 78439541 78439632 -43404224 + B1_Mur4 SINE Alu 34 150 0 1 1183 323 288 0 40 chr11 78440443 78440519 -43403337 + PB1D10 SINE Alu 1 73 -44 1 1183 210 162 27 0 chr11 78440547 78440584 -43403272 + CT-rich Low_complexity Low_complexity 3 40 0 1 1183 342 276 112 0 chr11 78441570 78441668 -43402188 - PB1D7 SINE Alu 0 120 12 1 1183 428 324 14 41 chr11 78441617 78441762 -43402094 - ID_B1 SINE B4 -81 143 3 1 1183 440 277 113 0 chr11 78441989 78442166 -43401690 - L1MC4 LINE L1 -379 7663 7467 1 1183 299 319 72 0 chr11 78442200 78442338 -43401518 - L1MC4 LINE L1 -753 7289 7142 1 1183 509 248 92 25 chr11 78443103 78443223 -43400633 - ID_B1 SINE B4 -87 137 10 1 1183 184 304 66 57 chr11 78444040 78444162 -43399694 - L3 LINE CR1 -2260 2229 2107 1 1183 552 228 65 0 chr11 78444658 78444781 -43399075 - RSINE1 SINE B4 -32 133 3 1 1183 1320 74 11 11 chr11 78445257 78445435 -43398421 + B2_Mm2 SINE B2 1 178 -17 1 1183 1409 76 38 0 chr11 78445580 78445764 -43398092 - B2_Mm2 SINE B2 -3 192 2 1 1183 271 300 0 0 chr11 78445974 78446044 -43397812 + ID4_ SINE ID 5 74 -9 1 1183 319 296 61 0 chr11 78446202 78446300 -43397556 + ID_B1 SINE B4 90 193 -31 1 1183 245 289 44 80 chr11 78446300 78446315 -43397541 + PB1D10 SINE Alu 9 117 0 1 1183 384 205 48 0 chr11 78446322 78446405 -43397451 + B1F SINE Alu 4 90 -59 1 1183 273 294 141 0 chr11 78446446 78446538 -43397318 + LTR50 LTR ERVL 15 119 -676 1 1183 502 239 280 12 chr11 78446708 78446958 -43396898 + LTR50 LTR ERVL 476 792 -3 1 1183 381 70 0 0 chr11 78447103 78447160 -43396696 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1183 521 220 9 57 chr11 78447161 78447267 -43396589 - RSINE1 SINE B4 -63 102 2 1 1183 250 316 50 39 chr11 78447270 78447463 -43396393 + L1M5 LINE L1 5567 5760 -480 1 1183 2703 23 166 0 chr11 78447463 78447806 -43396050 + MTB LTR MaLR 1 400 0 1 1183 250 316 50 39 chr11 78447806 78447895 -43395961 + L1M5 LINE L1 5761 5852 -388 1 1183 1028 122 0 0 chr11 78447958 78448105 -43395751 + B2_Mm2 SINE B2 1 147 -48 1 1183 590 217 42 35 chr11 78448276 78448419 -43395437 - B1_Mur1 SINE Alu -5 144 1 1 1183 719 272 65 25 chr11 78448447 78448647 -43395209 - B3 SINE B2 -1 215 8 1 1183 847 184 0 14 chr11 78448680 78448823 -43395033 - B1_Mur1 SINE Alu 0 149 9 1 1183 261 168 138 0 chr11 78449776 78449856 -43394000 + ORR1D1 LTR MaLR 104 203 -167 1 1183 1466 256 110 29 chr11 78449856 78450472 -43393384 + Lx7 LINE L1 5739 6404 -1292 1 1183 1042 248 150 61 chr11 78450497 78450916 -43392940 - Lx7 LINE L1 -801 6895 6419 1 1183 237 174 21 42 chr11 78450976 78451024 -43392832 - B3A SINE B2 -151 47 1 1 1183 274 264 149 0 chr11 78451286 78451373 -43392483 + PB1D10 SINE Alu 5 104 -13 1 1183 255 79 0 0 chr11 78451374 78451412 -43392444 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1183 331 252 143 6 chr11 78451437 78451595 -43392261 + L1M4b LINE L1 3492 3618 -3716 1 1183 1001 129 7 1 chr11 78451597 78451766 -43392090 + B2_Mm1t SINE B2 6 181 -14 1 1183 333 282 84 17 chr11 78451803 78451922 -43391934 - L1MD LINE L1 -1899 4247 4121 1 1183 354 284 0 18 chr11 78452110 78452221 -43391635 + L1M4b LINE L1 6399 6507 -477 1 1183 4390 44 2 0 chr11 78452288 78452816 -43391040 + L1_Mus1 LINE L1 6039 6567 0 1 1183 491 222 27 0 chr11 78453236 78453342 -43390514 + PB1D9 SINE Alu 9 120 0 1 1183 1210 35 0 0 chr11 78453795 78453940 -43389916 - B1_Mm SINE Alu 0 147 3 1 1183 240 307 22 43 chr11 78454825 78454917 -43388939 + MT2B LTR ERVL 151 240 -361 1 1183 380 226 18 0 chr11 78454850 78454934 -43388922 + B1_Mus2 SINE Alu 9 102 -47 1 1183 24 32 0 0 chr11 78455105 78455136 -43388720 + AT_rich Low_complexity Low_complexity 1 31 0 1 1183 686 212 30 0 chr11 78455136 78455268 -43388588 + B1_Mur2 SINE Alu 1 136 -13 1 1183 1185 198 5 0 chr11 78455320 78455527 -43388329 - B3 SINE B2 -7 209 2 1 1183 557 331 8 79 chr11 78456645 78456911 -43386945 - B4A SINE B4 -43 249 3 1 1183 260 265 0 78 chr11 78457243 78457333 -43386523 - MIRc SINE MIR -101 167 85 1 1183 431 298 10 0 chr11 78457683 78457787 -43386069 + PB1D10 SINE Alu 13 117 0 1 1183 503 297 83 18 chr11 78458257 78458425 -43385431 - B3A SINE B2 -18 180 2 1 1183 359 299 26 61 chr11 78458623 78458737 -43385119 + PB1D10 SINE Alu 7 116 -1 1 1183 319 347 13 94 chr11 78458752 78458850 -43385006 + B4 SINE B4 1 85 -207 1 1183 293 215 43 58 chr11 78458850 78458919 -43384937 + PB1D7 SINE Alu 1 68 -52 1 1183 180 0 0 0 chr11 78459061 78459081 -43384775 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1183 807 327 64 12 chr11 78459856 78460184 -43383672 + Tigger7 DNA MER2_type 1 345 -2146 1 1183 365 227 0 0 chr11 78460187 78460262 -43383594 + Tigger7 DNA MER2_type 963 1037 -1454 1 1183 256 215 14 58 chr11 78460287 78460356 -43383500 + Tigger7 DNA MER2_type 2426 2491 0 1 1183 418 218 112 68 chr11 78460699 78460994 -43382862 + L1MEc LINE L1 1792 2099 -4301 1 1183 440 289 28 28 chr11 78461038 78461145 -43382711 + B3A SINE B2 91 197 -1 1 1183 243 263 10 10 chr11 78461152 78461248 -43382608 + L1MEc LINE L1 2106 2201 -4199 1 1183 398 256 76 110 chr11 78461351 78461496 -43382360 + PB1D10 SINE Alu 1 140 -9 1 1183 595 175 15 8 chr11 78461532 78461664 -43382192 + B3 SINE B2 2 216 0 1 1183 564 254 40 28 chr11 78462209 78462460 -43381396 + L1ME1 LINE L1 5693 5946 -233 1 1183 426 212 97 9 chr11 78462891 78463005 -43380851 + L1MC5 LINE L1 6749 6872 -1089 1 1183 515 270 71 19 chr11 78463153 78463308 -43380548 - RSINE1 SINE B4 0 165 3 1 1183 1122 175 34 20 chr11 78463333 78463537 -43380319 + B3 SINE B2 1 207 -9 1 1183 517 203 119 8 chr11 78463543 78463677 -43380179 + B1_Mur2 SINE Alu 1 149 0 1 1183 493 264 106 48 chr11 78463836 78463963 -43379893 - B4 SINE B4 -51 241 114 1 1183 477 0 0 0 chr11 78463963 78464016 -43379840 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 1183 493 264 106 48 chr11 78464016 78464115 -43379741 - B4 SINE B4 -179 113 2 1 1183 421 218 47 107 chr11 78464793 78464942 -43378914 + B1F SINE Alu 3 142 -7 1 1183 309 321 21 6 chr11 78465671 78465755 -43378101 + PB1D7 SINE Alu 15 105 -12 1 1183 302 0 26 0 chr11 78465755 78465793 -43378063 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 1 1183 344 321 9 45 chr11 78465793 78465904 -43377952 + PB1D10 SINE Alu 2 108 -9 1 1183 734 188 27 14 chr11 78465936 78466082 -43377774 + B1_Mur2 SINE Alu 1 148 -1 1 1183 258 105 0 0 chr11 78466186 78466224 -43377632 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1183 647 200 89 0 chr11 78466453 78466588 -43377268 + B1_Mus1 SINE Alu 2 148 0 1 1183 595 189 24 0 chr11 78467490 78467661 -43376195 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1183 1221 28 7 0 chr11 78467907 78468051 -43375805 - B1_Mus2 SINE Alu 0 147 3 1 1183 463 268 92 84 chr11 78468757 78469116 -43374740 + L1M3 LINE L1 4936 5297 -843 1 1183 1059 222 228 15 chr11 78469126 78469464 -43374392 + MTD LTR MaLR 10 419 0 1 1183 635 271 108 17 chr11 78469481 78469777 -43374079 + L1M3 LINE L1 5341 5663 -508 1 1183 307 189 179 53 chr11 78469787 78469882 -43373974 - PB1D9 SINE Alu -1 119 13 1 1183 331 236 154 23 chr11 78469895 78470025 -43373831 + L1M3 LINE L1 5676 5822 -469 1 1183 568 231 102 0 chr11 78470343 78470490 -43373366 - RSINE1 SINE B4 -1 164 3 1 1183 252 0 0 0 chr11 78470570 78470598 -43373258 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1183 1135 75 7 0 chr11 78470610 78470757 -43373099 - B1_Mus1 SINE Alu 0 148 1 1 1183 2173 141 11 12 chr11 78470774 78471136 -43372720 + ORR1A1 LTR MaLR 15 365 -5 1 1183 283 350 37 12 chr11 78471133 78471214 -43372642 - B1F1 SINE Alu -64 85 3 1 1183 394 349 45 8 chr11 78473765 78473898 -43369958 - ID_B1 SINE B4 -3 221 84 1 1183 879 153 15 0 chr11 78473921 78474058 -43369798 - B1_Mur4 SINE Alu -11 139 1 1 1183 1129 249 80 44 chr11 78474138 78474500 -43369356 + ORR1C2 LTR MaLR 10 384 0 1 1183 560 198 9 43 chr11 78474988 78475104 -43368752 + PB1D7 SINE Alu 1 112 -8 1 1183 339 289 0 62 chr11 78475188 78475284 -43368572 + PB1D10 SINE Alu 1 90 -27 1 1183 243 0 0 0 chr11 78475289 78475316 -43368540 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1183 369 0 0 0 chr11 78475316 78475356 -43368500 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1183 489 233 182 23 chr11 78475356 78475532 -43368324 + MLT1A LTR MaLR 163 366 -8 1 1183 449 274 57 76 chr11 78475590 78475748 -43368108 - RSINE1 SINE B4 0 165 11 1 1183 347 129 97 28 chr11 78476589 78476661 -43367195 + B1_Mus2 SINE Alu 71 147 0 1 1183 1071 73 0 0 chr11 78476772 78476908 -43366948 - B1_Mus1 SINE Alu -12 136 1 1 1183 33 25 0 0 chr11 78477070 78477110 -43366746 + AT_rich Low_complexity Low_complexity 1 40 0 1 1183 331 202 37 37 chr11 78477621 78477703 -43366153 + ID2 SINE ID 1 82 -1 1 1183 245 199 97 7 chr11 78477724 78477817 -43366039 + PB1D10 SINE Alu 49 148 -1 1 1183 833 164 36 0 chr11 78478045 78478185 -43365671 + B1_Mus2 SINE Alu 3 147 0 1 1183 405 0 0 0 chr11 78478513 78478558 -43365298 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1183 740 73 55 0 chr11 78479084 78479194 -43364662 + B2_Mm2 SINE B2 80 195 0 1 1183 226 267 146 34 chr11 78479354 78479443 -43364413 + PB1D7 SINE Alu 21 119 -1 1 1183 769 119 258 0 chr11 78479633 78479784 -43364072 + B2_Mm2 SINE B2 2 191 -4 1 1183 333 242 147 39 chr11 78479857 78479974 -43363882 + MER2 DNA MER2_type 93 223 -122 1 1183 393 264 36 10 chr11 78479974 78480086 -43363770 + B1F1 SINE Alu 1 118 -2 1 1183 496 230 19 10 chr11 78480327 78480440 -43363416 + B4A SINE B4 6 112 -53 1 1183 335 227 43 54 chr11 78480467 78480560 -43363296 + B4 SINE B4 201 292 0 1 1183 459 309 32 32 chr11 78481424 78481454 -43362402 + ID_B1 SINE B4 68 223 0 1 1183 709 145 56 16 chr11 78481454 78481580 -43362276 + B1_Mus1 SINE Alu 18 148 0 1 1183 207 200 0 0 chr11 78481582 78481627 -43362229 + A-rich Low_complexity Low_complexity 1 45 0 1 1183 366 293 71 9 chr11 78481627 78481851 -43362005 + L1ME2 LINE L1 4477 4714 -1432 1 1183 627 60 42 25 chr11 78482516 78482635 -43361221 + (TCCCC)n Simple_repeat Simple_repeat 1 121 0 1 1183 300 48 0 0 chr11 78482749 78482791 -43361065 + B1_Mus2 SINE Alu 106 147 0 1 1183 319 53 0 50 chr11 78482791 78482851 -43361005 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1 1183 307 247 0 27 chr11 78482984 78483059 -43360797 + RMER6B LTR ERVK 367 439 -22 1 1183 350 296 138 25 chr11 78483168 78483364 -43360492 + L1ME2 LINE L1 5094 5300 -846 1 1183 588 232 127 24 chr11 78483390 78483681 -43360175 + L1ME2 LINE L1 5352 5672 -492 1 1183 404 353 72 67 chr11 78483700 78484076 -43359780 + L1ME2 LINE L1 5753 6130 -34 1 1183 402 21 0 0 chr11 78484171 78484218 -43359638 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1183 242 255 0 0 chr11 78484221 78484268 -43359588 + ID2 SINE ID 28 74 -9 1 1183 234 286 0 73 chr11 78484268 78484289 -43359567 + ID_B1 SINE B4 29 91 -133 1 1183 1550 37 16 0 chr11 78484822 78485011 -43358845 + B2_Mm1t SINE B2 2 193 0 1 1183 702 92 76 0 chr11 78485108 78485227 -43358629 + Lx9 LINE L1 6961 7088 -556 1 1183 1072 137 48 126 chr11 78485223 78485394 -43358462 + Lx9 LINE L1 7322 7488 -156 1 1183 270 0 0 0 chr11 78485394 78485424 -43358432 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1 1183 1072 137 48 126 chr11 78485424 78485562 -43358294 + Lx9 LINE L1 7489 7607 -37 1 1183 392 161 0 12 chr11 78485562 78485644 -43358212 + G-rich Low_complexity Low_complexity 2 82 0 1 1183 274 369 120 12 chr11 78485787 78486066 -43357790 - L2c LINE L2 -281 3106 2801 1 1183 1037 138 51 6 chr11 78486119 78486294 -43357562 + URR1B DNA MER1_type 41 223 -2 1 1183 225 94 0 0 chr11 78486956 78486988 -43356868 + (TA)n Simple_repeat Simple_repeat 1 32 0 1 1183 752 185 20 33 chr11 78487279 78487430 -43356426 - B1_Mur1 SINE Alu 0 149 1 1 1183 1169 82 0 0 chr11 78487458 78487604 -43356252 + B1_Mus2 SINE Alu 2 147 0 1 1183 261 118 0 0 chr11 78487604 78487655 -43356201 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1183 438 273 105 56 chr11 78487707 78488055 -43355801 - L1MD LINE L1 -515 5664 5294 1 1183 246 254 13 53 chr11 78488055 78488130 -43355726 - ID4 SINE ID -10 73 2 1 1183 438 247 24 87 chr11 78488130 78488219 -43355637 - L1MD LINE L1 -886 5293 5208 1 1183 468 206 48 10 chr11 78488236 78488339 -43355517 - RMER30 DNA MER1_type -6 196 90 1 1183 525 259 101 22 chr11 78488359 78488497 -43355359 - B3A SINE B2 -35 163 15 1 1183 238 258 19 114 chr11 78488501 78488606 -43355250 + Charlie12 DNA MER1_type 115 209 -2664 1 1183 417 164 30 0 chr11 78488520 78488587 -43355269 - RMER30 DNA MER1_type -124 78 10 1 1183 221 213 21 0 chr11 78488807 78488854 -43355002 - ID4 SINE ID -31 52 5 1 1183 344 350 48 24 chr11 78489041 78489208 -43354648 - MIR SINE MIR -26 236 66 1 1183 1952 171 85 18 chr11 78490465 78490852 -43353004 - MTC LTR MaLR -8 413 1 1 1183 195 114 0 0 chr11 78491269 78491304 -43352552 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1183 387 308 9 0 chr11 78491561 78491668 -43352188 - PB1D10 SINE Alu -9 108 1 1 1183 21 36 0 0 chr11 78491758 78491786 -43352070 + AT_rich Low_complexity Low_complexity 1 28 0 1 1183 387 260 48 9 chr11 78491806 78491911 -43351945 - RSINE1 SINE B4 -36 129 21 1 1183 273 258 21 0 chr11 78492312 78492405 -43351451 + L1M4 LINE L1 5184 5278 -868 1 1183 440 283 0 7 chr11 78493242 78493360 -43350496 - B1F SINE Alu -2 118 5 1 1183 692 154 154 0 chr11 78494040 78494170 -43349686 + B1_Mur4 SINE Alu 1 150 0 1 1183 1006 148 120 0 chr11 78494661 78494844 -43349012 + B3 SINE B2 1 205 -11 1 1183 1010 105 33 0 chr11 78494963 78495116 -43348740 - URR1B DNA MER1_type 0 225 68 1 1183 246 32 0 0 chr11 78495136 78495167 -43348689 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1183 1138 44 0 0 chr11 78495167 78495303 -43348553 - B1_Mm SINE Alu -9 138 3 1 1183 227 323 65 0 chr11 78495305 78495367 -43348489 - URR1B DNA MER1_type -143 82 17 1 1183 272 240 40 0 chr11 78496626 78496701 -43347155 + ID4 SINE ID 1 78 -5 1 1183 388 197 13 26 chr11 78497973 78498051 -43345805 - ID SINE ID -143 81 5 1 1183 607 249 71 88 chr11 78498180 78498274 -43345582 + MER33 DNA MER1_type 31 117 -207 1 1183 1039 74 7 0 chr11 78498274 78498409 -43345447 + B1_Mus1 SINE Alu 2 137 -11 1 1183 607 249 71 88 chr11 78498409 78498609 -43345247 + MER33 DNA MER1_type 118 319 -5 1 1183 290 216 61 98 chr11 78498851 78498871 -43344985 + PB1D10 SINE Alu 38 116 -1 1 1183 297 186 32 48 chr11 78498871 78498933 -43344923 + ID_B1 SINE B4 161 221 -3 1 1183 264 256 56 44 chr11 78498942 78499032 -43344824 + ID4 SINE ID 2 92 -60 1 1183 345 159 0 0 chr11 78499112 78499175 -43344681 + GA-rich Low_complexity Low_complexity 1 63 0 1 1183 583 253 57 40 chr11 78499252 78499429 -43344427 + B3A SINE B2 3 182 -16 1 1183 395 317 57 8 chr11 78499570 78499694 -43344162 - RSINE1 SINE B4 -17 148 19 1 1183 750 157 0 0 chr11 78499875 78499996 -43343860 + B1_Mus1 SINE Alu 1 121 -27 1 1183 776 29 20 0 chr11 78500012 78500114 -43343742 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 1 1183 334 226 234 12 chr11 78500123 78500290 -43343566 + B3 SINE B2 13 216 0 2 1183 380 260 203 50 chr11 78500373 78500555 -43343301 - ID_B1 SINE B4 -13 211 2 3 1183 185 284 23 58 chr11 78500719 78500805 -43343051 - MIRb SINE MIR -121 147 65 4 1183 324 0 0 0 chr11 78500991 78501027 -43342829 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1183 306 0 0 0 chr11 78501027 78501060 -43342796 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1183 184 250 12 70 chr11 78501074 78501160 -43342696 + L2 LINE L2 1982 2062 -1357 7 1183 380 266 108 20 chr11 78501480 78501698 -43342158 + B4 SINE B4 31 276 -16 8 1183 218 106 21 0 chr11 78501757 78501804 -43342052 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1183 695 195 16 0 chr11 78502419 78502547 -43341309 - B1F SINE Alu 0 149 20 1 1183 207 0 0 0 chr11 78503514 78503537 -43340319 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1183 313 295 154 0 chr11 78505018 78505167 -43338689 - MIRb SINE MIR -11 257 86 1 1183 768 60 256 0 chr11 78506336 78506453 -43337403 - B1_Mus1 SINE Alu 0 148 2 1 1183 487 252 41 0 chr11 78506816 78506963 -43336893 + MLT1B LTR MaLR 192 344 -46 1 1183 1420 139 9 0 chr11 78507048 78507271 -43336585 + URR1B DNA MER1_type 1 225 0 1 1183 330 218 169 88 chr11 78507278 78507414 -43336442 + B1F1 SINE Alu 3 149 0 1 1183 234 0 0 0 chr11 78507722 78507748 -43336108 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1183 203 175 0 0 chr11 78509520 78509560 -43334296 + (CTG)n Simple_repeat Simple_repeat 1 40 0 1 1183 199 192 13 13 chr11 78509611 78509690 -43334166 + (TGG)n Simple_repeat Simple_repeat 2 80 0 1 1183 230 267 0 0 chr11 78509971 78510031 -43333825 + A-rich Low_complexity Low_complexity 1 60 0 2 1183 211 321 0 0 chr11 78510818 78510899 -43332957 + (CCG)n Simple_repeat Simple_repeat 1 81 0 2 1183 273 219 0 0 chr11 78511215 78511288 -43332568 + T-rich Low_complexity Low_complexity 1 73 0 2 1184 640 193 0 92 chr11 78512470 78512601 -43331255 + B1_Mur3 SINE Alu 1 119 -1 2 1184 208 157 19 38 chr11 78512602 78512655 -43331201 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 2 1184 389 270 27 9 chr11 78513379 78513491 -43330365 + Tigger7 DNA MER2_type 2340 2453 -38 2 1184 209 224 0 43 chr11 78513710 78513873 -43329983 + (CTCCG)n Simple_repeat Simple_repeat 1 156 0 2 1184 254 372 104 5 chr11 78514241 78514433 -43329423 + MIRb SINE MIR 40 250 -18 2 1184 392 183 65 21 chr11 78514854 78514958 -43328898 + PB1D10 SINE Alu 4 106 -11 2 1184 209 33 33 0 chr11 78514958 78514988 -43328868 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1184 334 291 69 52 chr11 78515053 78515158 -43328698 + PB1D7 SINE Alu 1 108 -12 3 1184 180 77 0 0 chr11 78515158 78515184 -43328672 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1184 277 232 42 0 chr11 78515195 78515290 -43328566 - MER33 DNA MER1_type -66 258 160 3 1184 425 306 24 8 chr11 78515385 78515510 -43328346 + B1F1 SINE Alu 11 137 -12 3 1184 250 87 21 21 chr11 78515512 78515559 -43328297 + (TCTCCC)n Simple_repeat Simple_repeat 3 49 0 3 1184 368 224 13 0 chr11 78515596 78515672 -43328184 - MER3 DNA MER1_type -96 113 37 3 1184 182 289 158 0 chr11 78516260 78516336 -43327520 - MIRc SINE MIR -121 147 60 3 1184 205 271 60 40 chr11 78516704 78516804 -43327052 + MIRb SINE MIR 42 143 -125 3 1184 1113 96 0 0 chr11 78517007 78517153 -43326703 + B1_Mus2 SINE Alu 2 147 0 3 1184 630 224 37 0 chr11 78517799 78517933 -43325923 - ID_B1 SINE B4 -7 217 79 3 1184 557 299 84 17 chr11 78517946 78518184 -43325672 + B4A SINE B4 4 257 -35 4 1184 850 138 0 19 chr11 78518188 78518350 -43325506 + T-rich Low_complexity Low_complexity 2 160 0 4 1184 1236 55 0 0 chr11 78518355 78518501 -43325355 - B1_Mus2 SINE Alu 0 147 2 4 1184 333 131 0 0 chr11 78518552 78518613 -43325243 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1184 281 293 0 12 chr11 78518677 78518760 -43325096 + ID4 SINE ID 2 83 0 4 1184 253 73 0 47 chr11 78518859 78518902 -43324954 - B2_Mm2 SINE B2 -154 41 1 4 1184 287 339 23 46 chr11 78518911 78518923 -43324933 - B1_Mur3 SINE Alu -21 128 117 4 1184 1497 58 11 0 chr11 78518923 78519111 -43324745 - B2_Mm1t SINE B2 -3 190 1 4 1184 459 291 1 2 chr11 78519111 78519228 -43324628 - PB1D10 SINE Alu -33 116 2 4 1184 700 243 10 84 chr11 78519929 78520131 -43323725 - B3A SINE B2 -11 187 1 4 1184 722 116 121 24 chr11 78520459 78520583 -43323273 - B1_Mm SINE Alu -11 136 1 4 1184 379 247 13 0 chr11 78520730 78520807 -43323049 + ID4 SINE ID 3 80 -3 5 1184 467 262 0 8 chr11 78520878 78521001 -43322855 + ID_B1 SINE B4 97 218 -6 5 1184 341 281 0 102 chr11 78521014 78521141 -43322715 - PB1D9 SINE Alu -6 114 1 5 1184 23 0 0 0 chr11 78521154 78521177 -43322679 + AT_rich Low_complexity Low_complexity 1 23 0 5 1184 306 241 80 11 chr11 78521290 78521378 -43322478 - LTR16C LTR ERVL -74 415 322 5 1184 1527 204 56 36 chr11 78521379 78521736 -43322120 + ORR1D2 LTR MaLR 1 364 -6 5 1184 484 339 79 5 chr11 78521742 78521932 -43321924 - LTR16C LTR ERVL -164 325 122 5 1184 1233 34 0 7 chr11 78522705 78522852 -43321004 + B1_Mm SINE Alu 2 147 0 5 1184 198 0 0 0 chr11 78522853 78522875 -43320981 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1184 219 36 0 0 chr11 78523580 78523608 -43320248 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 1184 592 294 0 0 chr11 78523862 78524005 -43319851 - ID_B1 SINE B4 -1 223 81 5 1184 396 0 0 0 chr11 78524085 78524129 -43319727 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1184 911 153 178 11 chr11 78524193 78524378 -43319478 + B3 SINE B2 1 216 0 6 1184 270 267 55 82 chr11 78524409 78524519 -43319337 + PB1D10 SINE Alu 1 107 -10 6 1184 478 315 68 0 chr11 78524522 78524668 -43319188 + B4A SINE B4 2 157 -135 6 1184 1612 291 48 23 chr11 78524765 78525286 -43318570 - Lx8 LINE L1 -294 7179 6646 6 1184 708 256 0 0 chr11 78525290 78525423 -43318433 + B1_Mur3 SINE Alu 2 134 -15 6 1184 228 167 14 27 chr11 78525428 78525502 -43318354 + GA-rich Low_complexity Low_complexity 5 77 0 6 1184 1383 237 61 54 chr11 78525510 78525951 -43317905 - Lx8 LINE L1 -840 6633 6190 6 1184 996 310 31 87 chr11 78525976 78526582 -43317274 - Lx8 LINE L1 -1570 6126 5570 6 1184 867 188 0 7 chr11 78526582 78526727 -43317129 - B1_Mur1 SINE Alu -2 147 4 6 1184 996 309 31 127 chr11 78526727 78527053 -43316803 - Lx8 LINE L1 -311 5569 5259 6 1184 235 232 0 18 chr11 78527053 78527110 -43316746 - RMER6B LTR ERVK -31 430 375 6 1184 734 232 39 87 chr11 78527777 78527921 -43315935 - L1M2 LINE L1 -1430 4713 4574 6 1184 1367 75 32 11 chr11 78527921 78528111 -43315745 - B2_Mm2 SINE B2 0 195 2 7 1184 734 232 39 87 chr11 78528111 78528277 -43315579 - L1M2 LINE L1 -1570 4573 4418 6 1184 504 301 59 13 chr11 78528464 78528844 -43315012 - L1M5 LINE L1 -1659 4487 4095 7 1184 572 273 8 0 chr11 78528909 78529041 -43314815 - ID_B1 SINE B4 -18 206 74 7 1184 212 0 0 35 chr11 78529318 78529347 -43314509 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1184 887 48 186 0 chr11 78529351 78529475 -43314381 - B1_Mm SINE Alu 0 147 1 7 1184 299 328 67 22 chr11 78530021 78530199 -43313657 + Charlie18a DNA MER1_type 1 186 -156 7 1184 643 256 63 149 chr11 78530257 78530348 -43313508 - B4A SINE B4 -2 290 220 7 1184 1199 54 0 0 chr11 78530348 78530495 -43313361 - B1_Mm SINE Alu 0 147 1 7 1184 643 256 63 149 chr11 78530495 78530626 -43313230 - B4A SINE B4 -73 219 92 7 1184 1540 57 0 15 chr11 78530626 78530823 -43313033 - B2_Mm2 SINE B2 -1 194 1 7 1184 643 256 63 149 chr11 78530823 78530915 -43312941 - B4A SINE B4 -201 91 2 7 1184 811 192 7 0 chr11 78530981 78531127 -43312729 - B1_Mus2 SINE Alu 0 147 1 7 1184 482 293 45 0 chr11 78531935 78532068 -43311788 - ID_B1 SINE B4 -1 223 85 8 1184 289 333 57 41 chr11 78532153 78532171 -43311685 - B1F2 SINE Alu -20 129 6 8 1184 353 327 39 0 chr11 78532171 78532275 -43311581 - ID_B1 SINE B4 -30 194 87 8 1184 246 32 0 0 chr11 78532291 78532322 -43311534 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 8 1184 637 148 2 3 chr11 78532341 78532454 -43311402 - B1_Mus1 SINE Alu -8 112 1 8 1184 754 264 8 113 chr11 78532654 78532893 -43310963 - ID_B1 SINE B4 -9 215 2 8 1184 1037 115 0 0 chr11 78533197 78533345 -43310511 - B1_Mus1 SINE Alu 0 148 1 8 1184 4647 109 20 62 chr11 78533397 78533605 -43310251 + RLTR19B LTR ERVK 3 208 -507 8 1184 1119 95 0 0 chr11 78533605 78533752 -43310104 + B1_Mus2 SINE Alu 1 147 0 8 1184 4647 109 20 62 chr11 78533752 78534287 -43309569 + RLTR19B LTR ERVK 209 715 0 8 1184 1996 176 12 62 chr11 78534765 78535184 -43308672 - RMER10B LTR ERVL 0 398 1 8 1184 243 0 0 0 chr11 78535331 78535358 -43308498 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1184 226 215 48 48 chr11 78535543 78535626 -43308230 + L1MC LINE L1 4748 4830 -1316 9 1184 389 84 0 165 chr11 78535740 78535841 -43308015 + B1_Mur4 SINE Alu 65 146 -1 9 1184 886 266 47 0 chr11 78536154 78536368 -43307488 - ID_B1 SINE B4 0 224 1 9 1184 840 166 14 14 chr11 78536433 78536580 -43307276 - B1_Mus1 SINE Alu -1 147 1 9 1184 495 230 59 30 chr11 78536626 78536828 -43307028 - L1MA7 LINE L1 -63 6228 6021 9 1184 359 224 0 0 chr11 78536921 78536997 -43306859 + B1F1 SINE Alu 1 76 -73 9 1184 241 360 40 20 chr11 78536993 78537194 -43306662 + MTEb LTR MaLR 170 374 -5 9 1184 309 227 227 0 chr11 78537331 78537419 -43306437 + PB1D9 SINE Alu 5 112 -8 9 1184 1109 198 9 14 chr11 78537422 78537632 -43306224 + B3 SINE B2 1 209 -7 9 1184 524 333 10 5 chr11 78537717 78537919 -43305937 - L1MC3 LINE L1 -280 7505 7303 1 1184 406 240 28 28 chr11 78537949 78538056 -43305800 - B1F2 SINE Alu -37 112 6 1 1184 180 0 0 0 chr11 78538066 78538086 -43305770 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1184 834 245 5 59 chr11 78538101 78538305 -43305551 + B3A SINE B2 1 193 -5 1 1184 468 198 101 23 chr11 78538355 78538484 -43305372 + B1F2 SINE Alu 9 147 -2 1 1184 659 165 0 9 chr11 78538632 78538748 -43305108 + ID_B1 SINE B4 104 218 -6 1 1184 265 303 62 83 chr11 78538716 78538764 -43305092 + ID_B1 SINE B4 36 176 -48 1 1184 326 269 0 31 chr11 78538764 78538860 -43304996 + B1F1 SINE Alu 6 98 -51 1 1184 1259 31 0 0 chr11 78539020 78539179 -43304677 + B2_Mm1a SINE B2 2 160 -33 1 1184 270 0 0 0 chr11 78539179 78539209 -43304647 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1184 1083 80 0 0 chr11 78539390 78539527 -43304329 + B1_Mus2 SINE Alu 2 138 -9 1 1184 529 254 49 108 chr11 78540563 78540868 -43302988 + RMER10A LTR ERVL 12 298 -144 1 1184 553 246 17 8 chr11 78541000 78541119 -43302737 - RSINE1 SINE B4 -43 122 3 1 1184 226 330 10 30 chr11 78541897 78541997 -43301859 + MER5A DNA MER1_type 59 156 -33 1 1184 925 121 43 0 chr11 78542073 78542213 -43301643 - B1_Mur4 SINE Alu 0 150 5 1 1184 22 0 0 0 chr11 78542253 78542275 -43301581 + AT_rich Low_complexity Low_complexity 1 22 0 1 1184 508 271 0 0 chr11 78542292 78542388 -43301468 - B1F1 SINE Alu -53 96 1 1 1184 245 278 0 126 chr11 78542299 78542402 -43301454 - MT2B2 LTR ERVL -340 244 155 1 1184 386 330 67 11 chr11 78542548 78542726 -43301130 + MIRb SINE MIR 26 213 -55 1 1184 722 202 6 0 chr11 78542947 78543110 -43300746 + CT-rich Low_complexity Low_complexity 3 166 0 1 1184 617 257 0 0 chr11 78543144 78543280 -43300576 - ID_B1 SINE B4 -5 219 84 1 1184 686 337 39 41 chr11 78543337 78543776 -43300080 + Tigger11a DNA MER2_type 80 517 -218 1 1184 624 335 27 54 chr11 78543784 78543994 -43299862 + B4A SINE B4 1 212 -80 1 1184 1032 125 0 0 chr11 78543994 78544138 -43299718 + B1_Mur4 SINE Alu 1 144 -6 1 1184 624 335 27 54 chr11 78544138 78544221 -43299635 + B4A SINE B4 213 286 -6 1 1184 368 324 93 7 chr11 78544721 78544861 -43298995 + RSINE1 SINE B4 13 164 -1 1 1184 316 155 14 14 chr11 78544866 78544938 -43298918 + GA-rich Low_complexity Low_complexity 1 72 0 1 1184 21 57 0 0 chr11 78545010 78545045 -43298811 + AT_rich Low_complexity Low_complexity 1 35 0 1 1184 714 215 7 43 chr11 78545211 78545352 -43298504 + B1_Mus2 SINE Alu 1 136 -11 1 1184 1063 125 0 0 chr11 78545352 78545520 -43298336 + B2_Mm2 SINE B2 3 170 -25 1 1184 312 107 333 46 chr11 78545589 78545697 -43298159 + B2_Mm2 SINE B2 49 187 -8 1 1184 258 294 0 14 chr11 78545916 78545985 -43297871 + ID4_ SINE ID 6 73 -10 1 1184 380 312 211 20 chr11 78546148 78546287 -43297569 + MER45C DNA Tip100 1 167 -786 1 1184 1452 145 160 0 chr11 78546287 78546569 -43297287 + ORR1C1 LTR MaLR 1 327 -51 1 1184 6595 42 31 0 chr11 78546585 78547369 -43296487 + RLTR13C2 LTR ERVK 1 808 0 1 1184 956 103 6 64 chr11 78547409 78547565 -43296291 - B1_Mus1 SINE Alu 0 148 2 1 1184 287 155 85 17 chr11 78547572 78547631 -43296225 + ORR1C1 LTR MaLR 316 378 0 1 1184 241 388 20 0 chr11 78547631 78547729 -43296127 + MER45C DNA Tip100 167 266 -687 1 1184 4255 105 0 57 chr11 78547874 78548511 -43295345 + MT2B LTR ERVL 1 601 0 1 1184 434 316 26 0 chr11 78548550 78548664 -43295192 + RSINE1 SINE B4 43 159 -6 1 1184 1289 106 10 5 chr11 78548641 78548841 -43295015 - ORR1A4 LTR MaLR -128 201 1 1 1184 237 246 45 15 chr11 78549030 78549096 -43294760 + MIR SINE MIR 194 261 -1 1 1184 761 182 73 0 chr11 78549134 78549271 -43294585 - B1_Mus2 SINE Alu 0 147 1 1 1184 187 267 93 0 chr11 78549415 78549501 -43294355 + L2c LINE L2 3136 3229 -158 1 1184 271 282 0 0 chr11 78549870 78549941 -43293915 + MIRb SINE MIR 108 178 -90 1 1184 551 294 51 14 chr11 78549941 78550079 -43293777 + RSINE1 SINE B4 15 157 -8 1 1184 279 0 0 0 chr11 78550082 78550113 -43293743 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1184 252 111 0 0 chr11 78550121 78550166 -43293690 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1184 243 0 0 0 chr11 78550172 78550199 -43293657 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1184 378 243 0 0 chr11 78550344 78550418 -43293438 + ID4 SINE ID 1 74 -9 1 1184 786 242 103 33 chr11 78551176 78551449 -43292407 + B4A SINE B4 1 292 0 1 1184 394 321 20 62 chr11 78551657 78551803 -43292053 + RSINE1 SINE B4 2 141 -24 1 1184 213 121 0 0 chr11 78551856 78551889 -43291967 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1184 927 144 0 0 chr11 78551895 78552034 -43291822 - B1_Mus2 SINE Alu -8 139 1 1 1184 300 289 136 23 chr11 78552223 78552400 -43291456 - MIR SINE MIR -59 203 7 1 1184 1167 56 0 0 chr11 78552600 78552744 -43291112 + B1_Mus2 SINE Alu 1 144 -3 1 1184 201 143 0 0 chr11 78552884 78552919 -43290937 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1184 562 170 30 0 chr11 78553144 78553244 -43290612 + B1_Mur2 SINE Alu 47 149 0 1 1184 321 228 89 0 chr11 78553397 78553476 -43290380 + PB1D10 SINE Alu 25 110 -7 1 1184 472 157 72 0 chr11 78553685 78553768 -43290088 + B1_Mm SINE Alu 47 135 -12 1 1184 290 164 0 35 chr11 78553865 78553922 -43289934 + B1F SINE Alu 95 149 0 1 1184 885 247 25 8 chr11 78553961 78554206 -43289650 + MTD LTR MaLR 13 261 -158 1 1184 365 167 13 0 chr11 78554235 78554313 -43289543 + GA-rich Low_complexity Low_complexity 1 79 0 1 1184 247 279 15 0 chr11 78554361 78554429 -43289427 + RSINE1 SINE B4 14 82 -83 1 1184 1776 183 87 3 chr11 78554431 78554810 -43289046 - MTD LTR MaLR -8 411 1 1 1184 331 239 0 0 chr11 78554810 78554873 -43288983 + RSINE1 SINE B4 81 143 -22 1 1184 197 155 43 45 chr11 78555176 78555250 -43288606 - MIRc SINE MIR -126 150 79 1 1184 231 217 0 0 chr11 78555521 78555567 -43288289 + MIR SINE MIR 217 262 0 1 1184 200 189 0 0 chr11 78555567 78555604 -43288252 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1 1184 892 278 195 66 chr11 78556706 78557146 -43286710 + RCHARR1 DNA MER1_type 5 499 -475 1 1184 405 296 25 25 chr11 78557146 78557309 -43286547 + RSINE1 SINE B4 3 165 0 1 1184 1804 202 29 89 chr11 78557309 78557616 -43286240 + RCHARR1 DNA MER1_type 484 741 -233 1 1184 1229 34 0 14 chr11 78557616 78557764 -43286092 - B1_Mus2 SINE Alu 0 147 2 1 1184 1804 193 23 90 chr11 78557764 78557916 -43285940 + RCHARR1 DNA MER1_type 742 887 -87 1 1184 255 125 0 0 chr11 78557925 78557965 -43285891 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1184 1102 292 10 38 chr11 78557987 78558279 -43285577 - B4A SINE B4 -3 289 6 1 1184 256 248 63 176 chr11 78558231 78558332 -43285524 + RCHARR1 DNA MER1_type 849 945 -29 1 1184 1685 31 0 0 chr11 78558332 78558524 -43285332 - B2_Mm1a SINE B2 0 193 2 1 1184 256 248 63 176 chr11 78558524 78558564 -43285292 + RCHARR1 DNA MER1_type 946 974 0 1 1184 617 240 19 52 chr11 78558816 78558970 -43284886 - RSINE1 SINE B4 -9 156 8 1 1184 232 220 68 0 chr11 78558977 78559036 -43284820 + MLT1F1 LTR MaLR 507 569 0 1 1184 894 147 7 14 chr11 78560203 78560348 -43283508 + B1_Mur3 SINE Alu 5 148 -1 1 1184 648 236 206 11 chr11 78560360 78560540 -43283316 + B3 SINE B2 1 215 -1 1 1184 628 215 83 0 chr11 78560587 78560708 -43283148 + B1_Mm SINE Alu 17 147 0 1 1184 794 252 44 0 chr11 78560966 78561172 -43282684 - ID_B1 SINE B4 -9 215 1 1 1184 816 160 7 27 chr11 78561205 78561353 -43282503 + B1_Mur4 SINE Alu 5 149 -1 1 1184 847 140 20 40 chr11 78561657 78561806 -43282050 - B1_Mur3 SINE Alu -1 148 3 1 1184 742 142 94 0 chr11 78562881 78563008 -43280848 - B1_Mur4 SINE Alu -1 149 11 1 1184 657 232 108 89 chr11 78563018 78563231 -43280625 - ID_B1 SINE B4 -7 217 1 1 1184 385 139 0 77 chr11 78563383 78563461 -43280395 - PB1D10 SINE Alu -1 116 45 1 1184 309 277 84 42 chr11 78563836 78563979 -43279877 - L1ME4a LINE L1 -259 5865 5717 1 1184 251 374 74 0 chr11 78565417 78565580 -43278276 + MIR SINE MIR 19 193 -69 1 1184 284 271 0 0 chr11 78565624 78565694 -43278162 - PB1D10 SINE Alu -2 115 46 1 1184 596 97 0 11 chr11 78565735 78565829 -43278027 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 1 1184 571 186 133 17 chr11 78565841 78565961 -43277895 - B1_Mus1 SINE Alu -10 138 5 1 1184 608 177 137 0 chr11 78566319 78566443 -43277413 - B1_Mur1 SINE Alu 0 149 9 1 1184 379 318 72 87 chr11 78566443 78566526 -43277330 - ID_B1 SINE B4 -1 223 20 1 1184 198 0 0 0 chr11 78566535 78566557 -43277299 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1184 488 228 40 0 chr11 78566981 78567082 -43276774 + B1_Mur2 SINE Alu 40 144 -5 1 1184 691 218 7 34 chr11 78567281 78567428 -43276428 - B1_Mur1 SINE Alu -5 144 2 1 1184 201 147 0 0 chr11 78567435 78567469 -43276387 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1184 261 119 0 0 chr11 78567618 78567660 -43276196 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1 1184 962 139 14 0 chr11 78567661 78567805 -43276051 - B1_Mus2 SINE Alu -1 146 1 1 1184 228 182 0 0 chr11 78567876 78567920 -43275936 + T-rich Low_complexity Low_complexity 1 44 0 1 1184 965 48 56 0 chr11 78567920 78568046 -43275810 - B1_Mur4 SINE Alu 0 150 18 1 1184 436 175 134 0 chr11 78568058 78568155 -43275701 - PB1D10 SINE Alu -1 116 7 1 1184 396 0 0 0 chr11 78568205 78568249 -43275607 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1184 762 251 53 0 chr11 78568255 78568426 -43275430 - B3A SINE B2 -16 182 3 1 1184 220 227 23 0 chr11 78568467 78568511 -43275345 - B1_Mus1 SINE Alu -102 46 2 2 1184 291 28 0 0 chr11 78568807 78568843 -43275013 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1184 1095 189 49 19 chr11 78569287 78569492 -43274364 + B3 SINE B2 1 211 -5 2 1184 1135 82 0 0 chr11 78569517 78569664 -43274192 + B1_Mus1 SINE Alu 2 148 0 2 1184 231 36 0 0 chr11 78569664 78569692 -43274164 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1184 207 210 32 0 chr11 78569712 78569732 -43274124 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 2 1184 456 193 95 60 chr11 78569732 78569848 -43274008 + PB1D9 SINE Alu 1 120 0 2 1184 207 210 32 0 chr11 78569848 78569889 -43273967 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1184 615 296 51 97 chr11 78569973 78570168 -43273688 - B4 SINE B4 -5 287 102 2 1184 315 0 0 0 chr11 78570202 78570237 -43273619 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2 1184 730 252 162 66 chr11 78570238 78570474 -43273382 - B4A SINE B4 -7 285 22 2 1184 1398 212 15 92 chr11 78570474 78570885 -43272971 + MTE2a LTR MaLR 1 379 0 2 1184 730 252 162 66 chr11 78570885 78570907 -43272949 - B4A SINE B4 -271 21 2 2 1184 195 69 0 0 chr11 78571174 78571203 -43272653 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1184 189 356 68 19 chr11 78571203 78571306 -43272550 + MIRb SINE MIR 131 238 -30 2 1184 370 245 331 0 chr11 78571346 78571485 -43272371 + ID_B1 SINE B4 31 215 -9 2 1184 227 143 71 0 chr11 78571449 78571491 -43272365 + PB1D7 SINE Alu 73 117 -3 2 1184 393 22 0 0 chr11 78571687 78571733 -43272123 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1184 303 355 9 0 chr11 78572442 78572552 -43271304 - MIRc SINE MIR -54 214 104 2 1184 2103 135 67 67 chr11 78572967 78573388 -43270468 + MTC LTR MaLR 1 421 0 2 1184 211 329 14 14 chr11 78573393 78573467 -43270389 - ID_B1 SINE B4 -52 172 99 2 1184 308 272 97 67 chr11 78573497 78573631 -43270225 - RMER15 LTR ERVL -92 483 346 2 1184 180 0 0 0 chr11 78573842 78573862 -43269994 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1184 24 0 0 0 chr11 78573879 78573903 -43269953 + AT_rich Low_complexity Low_complexity 1 24 0 2 1184 280 257 95 0 chr11 78574438 78574512 -43269344 - ID4 SINE ID -2 81 1 2 1184 709 340 21 0 chr11 78574659 78574947 -43268909 - L1MC4a LINE L1 -1994 5888 5595 2 1184 185 342 8 83 chr11 78575060 78575181 -43268675 + L2b LINE L2 3025 3136 -239 2 1184 785 260 41 5 chr11 78575370 78575567 -43268289 - ID_B1 SINE B4 -18 206 3 2 1184 269 295 136 68 chr11 78576490 78576726 -43267130 + L4 LINE RTE 1751 2002 -27 2 1184 21 0 0 0 chr11 78576819 78576840 -43267016 + AT_rich Low_complexity Low_complexity 1 21 0 2 1184 2027 167 71 35 chr11 78576840 78577263 -43266593 + RMER10A LTR ERVL 1 438 -4 2 1184 472 208 10 10 chr11 78577412 78577509 -43266347 - PB1D10 SINE Alu -11 106 10 2 1184 498 227 229 18 chr11 78577544 78577710 -43266146 - B3A SINE B2 -14 202 2 2 1184 453 333 92 69 chr11 78577818 78578211 -43265645 + MLT1K LTR MaLR 97 498 -97 2 1184 450 0 0 0 chr11 78578215 78578265 -43265591 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1184 587 252 30 0 chr11 78578267 78578398 -43265458 + MTEa LTR MaLR 243 377 -2 2 1184 223 250 105 14 chr11 78578482 78578566 -43265290 - MIRb SINE MIR -160 108 14 2 1184 1139 272 33 50 chr11 78578838 78579202 -43264654 + ORR1E LTR MaLR 2 359 0 2 1184 1120 335 80 55 chr11 78579247 78579812 -43264044 + MTE-int LTR MaLR 751 1329 -251 2 1184 249 204 0 0 chr11 78579808 78579852 -43264004 + B1_Mus1 SINE Alu 17 60 -88 2 1184 865 266 64 45 chr11 78579902 78580213 -43263643 + MTEa LTR MaLR 2 318 -61 2 1184 1110 77 7 0 chr11 78580216 78580359 -43263497 + B1_Mus1 SINE Alu 5 148 0 2 1184 230 0 33 0 chr11 78580361 78580391 -43263465 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 1184 629 115 76 42 chr11 78580413 78580500 -43263356 + B2_Mm2 SINE B2 1 91 -104 2 1184 229 180 19 39 chr11 78580500 78580552 -43263304 + MLT1B LTR MaLR 1 51 -314 2 1184 482 326 64 6 chr11 78580578 78580751 -43263105 + MLT1B LTR MaLR 197 379 -11 2 1184 474 252 58 0 chr11 78580794 78580897 -43262959 + B3A SINE B2 1 109 -89 2 1184 23 0 0 0 chr11 78580924 78580947 -43262909 + AT_rich Low_complexity Low_complexity 1 23 0 2 1184 1325 117 0 5 chr11 78580963 78581152 -43262704 - B2_Mm2 SINE B2 -5 190 3 2 1184 288 0 0 0 chr11 78581164 78581196 -43262660 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1184 1039 87 14 0 chr11 78581196 78581334 -43262522 - B1_Mus1 SINE Alu -7 141 2 2 1184 333 47 0 0 chr11 78581483 78581526 -43262330 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1184 431 251 146 127 chr11 78581585 78581790 -43262066 + ID_B1 SINE B4 16 224 0 2 1184 517 177 10 40 chr11 78581691 78581791 -43262065 + PB1D10 SINE Alu 21 117 0 2 1184 229 328 0 0 chr11 78581805 78581863 -43261993 - MER63D DNA AcHobo -984 77 20 2 1184 486 301 39 44 chr11 78582026 78582207 -43261649 + MER5A DNA MER1_type 1 180 -9 2 1184 333 247 14 0 chr11 78582740 78582813 -43261043 - ID4_ SINE ID -5 78 5 2 1184 253 343 70 14 chr11 78583009 78583151 -43260705 - L2c LINE L2 -228 3159 3010 2 1184 21 0 0 0 chr11 78583250 78583271 -43260585 + AT_rich Low_complexity Low_complexity 1 21 0 2 1184 537 239 6 4 chr11 78583272 78583386 -43260470 + PB1D10 SINE Alu 13 224 -87 2 1184 250 224 0 0 chr11 78583444 78583493 -43260363 + ID_B1 SINE B4 152 200 -24 2 1184 252 0 0 0 chr11 78583745 78583773 -43260083 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1184 928 114 0 15 chr11 78583849 78583982 -43259874 + B1_Mus1 SINE Alu 17 147 -1 2 1184 910 151 7 14 chr11 78584573 78584721 -43259135 - B1_Mur1 SINE Alu -1 148 2 2 1184 382 300 92 0 chr11 78584761 78584891 -43258965 - RSINE1 SINE B4 -4 161 20 2 1184 313 241 264 18 chr11 78584898 78585008 -43258848 - B1F1 SINE Alu -3 146 10 2 1184 211 152 0 42 chr11 78586118 78586166 -43257690 - RSINE1 SINE B4 -110 55 10 2 1184 842 143 7 0 chr11 78587315 78587462 -43256394 + (TA)n Simple_repeat Simple_repeat 1 148 0 2 1184 273 182 0 0 chr11 78587479 78587534 -43256322 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1184 225 94 0 0 chr11 78588131 78588163 -43255693 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1184 518 235 225 65 chr11 78588176 78588376 -43255480 - B4A SINE B4 -56 236 5 2 1184 1048 235 9 27 chr11 78588405 78588624 -43255232 + ID_B1 SINE B4 8 222 -2 2 1184 1412 51 45 6 chr11 78589075 78589253 -43254603 - B2_Mm2 SINE B2 -9 186 2 2 1184 1097 227 14 9 chr11 78589267 78589489 -43254367 - ID_B1 SINE B4 0 224 2 2 1184 484 216 63 8 chr11 78589591 78589644 -43254212 - B2_Mm2 SINE B2 -62 133 74 2 1184 195 42 0 0 chr11 78589644 78589668 -43254188 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 2 1184 484 216 63 8 chr11 78589668 78589740 -43254116 - B2_Mm2 SINE B2 -122 73 2 2 1184 597 293 7 14 chr11 78589776 78589918 -43253938 + B1F SINE Alu 1 141 -8 2 1184 495 306 96 23 chr11 78589950 78590211 -43253645 + B4 SINE B4 1 280 -12 2 1184 2286 55 134 0 chr11 78590212 78590540 -43253316 + MTB_Mm LTR MaLR 1 372 -35 2 1184 2687 118 0 3 chr11 78592373 78592754 -43251102 + RLTR14 LTR ERV1 3 382 0 2 1184 1263 94 0 0 chr11 78592784 78592964 -43250892 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1184 474 179 0 0 chr11 78592964 78593059 -43250797 + CT-rich Low_complexity Low_complexity 2 96 0 2 1184 807 238 28 19 chr11 78593068 78593282 -43250574 - ID_B1 SINE B4 -7 217 2 2 1184 180 111 0 0 chr11 78593384 78593411 -43250445 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1184 582 189 112 15 chr11 78593412 78593546 -43250310 - B1_Mur3 SINE Alu -1 148 2 2 1184 403 339 8 0 chr11 78593576 78593697 -43250159 + PB1 SINE Alu 4 125 -2 2 1184 484 221 20 73 chr11 78594029 78594180 -43249676 + MER5B DNA MER1_type 27 169 -9 2 1184 181 240 19 57 chr11 78594306 78594359 -43249497 - L2b LINE L2 -20 3355 3305 2 1184 761 193 7 41 chr11 78594471 78594617 -43249239 + B1_Mur2 SINE Alu 1 141 -8 2 1184 192 77 0 0 chr11 78594618 78594644 -43249212 + (GAA)n Simple_repeat Simple_repeat 1 26 0 2 1184 337 241 109 18 chr11 78594644 78594754 -43249102 + L1MEg LINE L1 1839 1958 -4126 2 1184 327 328 14 132 chr11 78594866 78594909 -43248947 + ID SINE ID 2 40 -184 2 1184 315 0 0 0 chr11 78594909 78594944 -43248912 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1184 1120 83 0 0 chr11 78594944 78595088 -43248768 - B1_Mm SINE Alu -2 145 2 2 1184 1348 91 5 26 chr11 78595093 78595285 -43248571 - B2_Mm1t SINE B2 -5 188 1 2 1184 327 328 14 132 chr11 78595285 78595378 -43248478 + ID_B1 SINE B4 41 127 -97 2 1184 303 314 126 8 chr11 78596172 78596317 -43247539 + MIR SINE MIR 1 172 -104 2 1184 214 303 40 40 chr11 78596416 78596513 -43247343 + MIR SINE MIR 132 235 -33 2 1184 183 376 21 21 chr11 78597086 78597181 -43246675 - MIR SINE MIR -139 123 29 2 1184 191 380 132 0 chr11 78597557 78597678 -43246178 + MIRb SINE MIR 114 250 -18 2 1184 545 186 34 50 chr11 78597707 78597826 -43246030 - PB1D10 SINE Alu 0 117 1 2 1184 409 231 97 53 chr11 78598173 78598287 -43245569 + PB1D9 SINE Alu 1 119 -1 2 1184 1168 269 83 12 chr11 78598288 78598698 -43245158 - L1MB5 LINE L1 -140 6034 5596 2 1184 423 83 0 0 chr11 78598711 78598771 -43245085 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1184 369 294 177 49 chr11 78598786 78599029 -43244827 - B4 SINE B4 -17 275 2 2 1184 384 239 16 135 chr11 78600138 78600264 -43243592 - RSINE1 SINE B4 0 165 55 3 1184 536 214 137 0 chr11 78600490 78600621 -43243235 - Lx8 LINE L1 -358 7115 6967 3 1184 213 149 0 21 chr11 78600624 78600672 -43243184 + T-rich Low_complexity Low_complexity 6 52 0 3 1184 517 236 9 0 chr11 78600672 78600782 -43243074 - PB1D7 SINE Alu 0 120 10 3 1184 263 209 14 56 chr11 78601217 78601288 -43242568 - ORR1E LTR MaLR -274 85 18 3 1184 817 248 32 147 chr11 78601444 78601505 -43242351 - ID_B1 SINE B4 -2 222 165 3 1184 1444 189 74 65 chr11 78601505 78601872 -43241984 + ORR1D1 LTR MaLR 1 370 -4 3 1184 817 248 32 147 chr11 78601872 78602061 -43241795 - ID_B1 SINE B4 -60 164 1 3 1184 1539 62 10 0 chr11 78602108 78602300 -43241556 - B2_Mm2 SINE B2 0 195 2 3 1184 703 232 40 59 chr11 78602304 78602506 -43241350 - B3A SINE B2 0 198 1 3 1184 298 197 97 14 chr11 78603650 78603722 -43240134 - B1F SINE Alu -2 147 70 3 1184 367 188 62 0 chr11 78603663 78603727 -43240129 - ID_B1 SINE B4 -14 210 143 3 1184 210 111 44 0 chr11 78603729 78603774 -43240082 + T-rich Low_complexity Low_complexity 3 49 0 3 1184 468 244 85 69 chr11 78603774 78603789 -43240067 - B2_Mm2 SINE B2 0 195 181 3 1184 1219 34 7 20 chr11 78603789 78603939 -43239917 - B1_Mus1 SINE Alu 0 148 1 3 1184 468 244 85 69 chr11 78603939 78603972 -43239884 - B2_Mm2 SINE B2 -15 180 139 3 1184 390 100 0 0 chr11 78603972 78604032 -43239824 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1184 597 244 85 69 chr11 78604032 78604171 -43239685 - B3A SINE B2 -57 138 4 3 1184 189 0 0 0 chr11 78604872 78604893 -43238963 + (C)n Simple_repeat Simple_repeat 1 21 0 3 1184 329 317 0 0 chr11 78604895 78604977 -43238879 - ID SINE ID -142 82 1 3 1184 196 152 0 29 chr11 78604986 78605054 -43238802 + A-rich Low_complexity Low_complexity 1 66 0 3 1184 254 353 9 38 chr11 78606582 78606688 -43237168 - MIR SINE MIR -126 136 34 3 1184 296 91 0 22 chr11 78607229 78607274 -43236582 + L2a LINE L2 3375 3418 -8 3 1184 826 246 178 4 chr11 78607566 78607807 -43236049 - B4A SINE B4 -1 291 9 3 1184 438 248 20 0 chr11 78608087 78608188 -43235668 - ORR1E LTR MaLR -249 110 8 3 1184 604 171 51 0 chr11 78608328 78608445 -43235411 + ID_B1 SINE B4 102 224 0 3 1184 819 259 99 14 chr11 78608782 78608797 -43235059 - B4A SINE B4 -47 245 231 3 1184 907 169 0 13 chr11 78608797 78608947 -43234909 - B1_Mur1 SINE Alu -1 148 1 3 1184 819 259 99 14 chr11 78608947 78609154 -43234702 - B4A SINE B4 -62 230 4 3 1184 449 248 54 39 chr11 78609336 78609466 -43234390 - MLT1J LTR MaLR -361 151 20 3 1184 25 31 0 0 chr11 78609507 78609539 -43234317 + AT_rich Low_complexity Low_complexity 1 32 0 3 1184 322 176 0 50 chr11 78610011 78610071 -43233785 - MLT1J LTR MaLR -361 151 95 3 1184 259 280 132 99 chr11 78610254 78610277 -43233579 - B2_Mm2 SINE B2 0 195 167 3 1184 393 70 0 0 chr11 78610277 78610334 -43233522 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1184 531 280 132 99 chr11 78610334 78610492 -43233364 - B3A SINE B2 -29 166 8 3 1184 3616 141 111 18 chr11 78610640 78610974 -43232882 - RMER6D LTR ERVK 0 720 367 3 1184 1116 127 0 0 chr11 78610974 78611203 -43232653 + (CA)n Simple_repeat Simple_repeat 1 229 0 3 1184 3616 141 111 18 chr11 78611203 78611526 -43232330 - RMER6D LTR ERVK -354 366 2 3 1184 673 280 60 46 chr11 78611547 78611618 -43232238 + ID SINE ID 4 69 -155 3 1184 5976 99 84 20 chr11 78611618 78612518 -43231338 - RMER17B LTR ERVK 0 958 1 3 1184 679 280 60 46 chr11 78612518 78612663 -43231193 + ID_B1 SINE B4 70 223 -1 3 1184 185 0 40 0 chr11 78613091 78613116 -43230740 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1184 1174 82 0 7 chr11 78613118 78613266 -43230590 - B1_Mus1 SINE Alu -1 147 1 3 1184 1662 239 63 16 chr11 78613628 78614074 -43229782 - RMER5 LTR ERV1 -20 514 48 3 1184 316 224 65 13 chr11 78614309 78614386 -43229470 - ID4_ SINE ID -2 81 1 3 1184 432 0 0 0 chr11 78614446 78614494 -43229362 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1184 305 303 0 0 chr11 78614495 78614561 -43229295 - ID4_ SINE ID -6 77 12 3 1184 377 322 141 58 chr11 78614631 78614944 -43228912 - L1ME3 LINE L1 -203 5959 5621 3 1184 598 252 80 0 chr11 78615439 78615590 -43228266 - RSINE1 SINE B4 0 165 3 3 1184 200 136 68 0 chr11 78615725 78615769 -43228087 + CT-rich Low_complexity Low_complexity 3 49 0 3 1184 333 309 58 20 chr11 78615842 78616057 -43227799 - L2b LINE L2 -194 3181 2960 3 1184 470 143 54 69 chr11 78616186 78616323 -43227533 + ORR1D1 LTR MaLR 1 119 -259 3 1184 333 0 0 0 chr11 78616336 78616373 -43227483 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1184 327 49 0 0 chr11 78616373 78616413 -43227443 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1184 274 209 0 15 chr11 78616422 78616553 -43227303 + CT-rich Low_complexity Low_complexity 2 130 0 3 1184 534 174 0 0 chr11 78616568 78616706 -43227150 + CT-rich Low_complexity Low_complexity 1 138 0 3 1184 925 205 66 15 chr11 78616709 78616907 -43226949 + ORR1D1 LTR MaLR 167 374 0 3 1184 752 225 186 6 chr11 78617634 78617817 -43226039 + B3 SINE B2 1 216 0 3 1184 253 224 48 95 chr11 78618067 78618151 -43225705 - ID4 SINE ID -3 80 1 3 1184 507 273 86 7 chr11 78618516 78618667 -43225189 - ID_B1 SINE B4 -54 170 8 3 1184 522 242 191 100 chr11 78619192 78619491 -43224365 - ORR1E LTR MaLR -33 326 1 3 1184 270 281 111 40 chr11 78619492 78619618 -43224238 + MIR SINE MIR 92 226 -36 3 1184 266 281 12 35 chr11 78619782 78619867 -43223989 + MLT2C1 LTR ERVL 25 107 -290 3 1184 264 30 0 0 chr11 78619921 78619954 -43223902 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1184 419 299 28 18 chr11 78619957 78620066 -43223790 + PB1D7 SINE Alu 5 114 -6 3 1184 234 0 0 0 chr11 78620106 78620132 -43223724 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1184 536 113 144 0 chr11 78620299 78620396 -43223460 - PB1D9 SINE Alu -6 114 4 3 1184 261 267 0 0 chr11 78621062 78621122 -43222734 - MIRb SINE MIR -109 159 100 3 1184 1056 196 67 5 chr11 78621609 78621819 -43222037 + ID_B1 SINE B4 1 223 -1 3 1184 979 251 154 24 chr11 78621991 78622289 -43221567 + MTE2b LTR MaLR 35 371 -8 3 1184 482 272 7 39 chr11 78622275 78622428 -43221428 - MER33 DNA MER1_type -160 164 17 3 1184 723 190 0 23 chr11 78622537 78622666 -43221190 + B1_Mus2 SINE Alu 1 126 -21 3 1184 1241 48 0 0 chr11 78622708 78622854 -43221002 + B1_Mm SINE Alu 2 147 0 3 1184 352 18 73 0 chr11 78622862 78622917 -43220939 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1184 351 113 0 0 chr11 78622917 78622970 -43220886 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1184 230 268 49 0 chr11 78623501 78623583 -43220273 - L2c LINE L2 -245 3142 3057 3 1184 343 244 13 0 chr11 78623718 78623796 -43220060 - ID4 SINE ID -3 80 2 3 1184 225 292 106 35 chr11 78624375 78624517 -43219339 + YREP_Mm Unknown Unknown 160 311 -1501 3 1184 395 223 138 35 chr11 78624409 78624525 -43219331 - ID_B1 SINE B4 -21 203 76 3 1184 338 281 23 55 chr11 78624624 78624752 -43219104 - MER5A1 DNA MER1_type -41 125 2 3 1184 823 124 41 0 chr11 78625605 78625726 -43218130 + B1_Mus2 SINE Alu 17 142 -5 3 1184 602 113 0 10 chr11 78625726 78625824 -43218032 + (GAA)n Simple_repeat Simple_repeat 3 99 0 3 1184 455 0 18 0 chr11 78625880 78625935 -43217921 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 3 1184 549 265 11 46 chr11 78626191 78626346 -43217510 + ID_B1 SINE B4 82 233 -59 3 1184 296 206 34 9 chr11 78626356 78626435 -43217421 + RSINE1 SINE B4 5 86 -206 3 1184 219 69 0 0 chr11 78626881 78626910 -43216946 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 1184 225 237 147 21 chr11 78626910 78627005 -43216851 + MIR SINE MIR 149 255 -7 3 1184 1238 238 79 7 chr11 78627104 78627383 -43216473 + MER2 DNA MER2_type 2 300 -45 3 1184 419 239 16 114 chr11 78628889 78628954 -43214902 + PB1D10 SINE Alu 2 65 -52 3 1184 1096 130 20 66 chr11 78628954 78628970 -43214886 - B2_Mm2 SINE B2 -7 188 174 3 1184 201 74 0 0 chr11 78628970 78628997 -43214859 + (TTA)n Simple_repeat Simple_repeat 2 28 0 3 1184 1096 130 20 66 chr11 78628997 78629177 -43214679 - B2_Mm2 SINE B2 -22 173 1 3 1184 419 239 16 114 chr11 78629177 78629234 -43214622 + PB1D10 SINE Alu 66 112 -5 3 1184 257 217 82 16 chr11 78630520 78630581 -43213275 + ID4_ SINE ID 1 65 -18 3 1184 513 84 0 0 chr11 78631145 78631216 -43212640 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 1184 697 297 59 0 chr11 78631494 78631696 -43212160 - MER58B DNA MER1_type -23 318 105 3 1184 221 0 0 33 chr11 78632429 78632459 -43211397 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1184 589 248 40 0 chr11 78632471 78632620 -43211236 - B4A SINE B4 -39 253 99 3 1184 213 352 74 74 chr11 78632768 78632824 -43211032 - B3A SINE B2 -7 191 2 3 1184 454 250 104 45 chr11 78632824 78632958 -43210898 - RSINE1 SINE B4 -21 144 3 3 1184 933 236 19 14 chr11 78633097 78633312 -43210544 - B3 SINE B2 0 216 1 3 1184 724 178 130 60 chr11 78633342 78633527 -43210329 - B3A SINE B2 0 198 1 3 1184 460 289 51 13 chr11 78633706 78633864 -43209992 - MER5A1 DNA MER1_type -2 164 1 3 1184 268 266 63 0 chr11 78634190 78634269 -43209587 - L2 LINE L2 -2089 1330 1247 3 1184 382 286 234 25 chr11 78634561 78634852 -43209004 + LTR16C LTR ERVL 134 485 -4 3 1184 242 351 31 38 chr11 78634962 78635122 -43208734 - L2 LINE L2 -457 2962 2804 3 1184 561 226 140 7 chr11 78635535 78635721 -43208135 - B3 SINE B2 0 195 6 3 1184 204 97 0 0 chr11 78635755 78635786 -43208070 + (CAT)n Simple_repeat Simple_repeat 3 33 0 3 1184 639 176 33 58 chr11 78635786 78635907 -43207949 - B1_Mm SINE Alu -1 146 29 3 1184 1308 50 0 0 chr11 78635936 78636095 -43207761 + B2_Mm1t SINE B2 2 160 -33 3 1184 219 88 0 0 chr11 78636095 78636129 -43207727 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 3 1184 205 200 0 0 chr11 78636201 78636241 -43207615 + A-rich Low_complexity Low_complexity 1 40 0 4 1184 308 202 0 25 chr11 78636332 78636413 -43207443 + CT-rich Low_complexity Low_complexity 2 80 0 4 1184 312 240 0 39 chr11 78637494 78637572 -43206284 + RSINE1 SINE B4 2 76 -89 4 1184 274 45 22 22 chr11 78637573 78637618 -43206238 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1184 597 71 235 0 chr11 78637888 78637973 -43205883 + U6 snRNA snRNA 1 105 -2 4 1184 321 277 74 0 chr11 78638204 78638299 -43205557 - L1M5 LINE L1 -2963 3183 3083 4 1184 840 154 0 69 chr11 78638299 78638459 -43205397 - B1_Mur3 SINE Alu 0 149 1 4 1184 344 233 0 55 chr11 78640499 78640590 -43203266 - PB1D10 SINE Alu -19 98 13 4 1184 661 284 67 40 chr11 78640590 78640964 -43202892 - L1MB8 LINE L1 -55 6123 5740 4 1184 216 0 0 0 chr11 78641010 78641034 -43202822 + (TGGGGG)n Simple_repeat Simple_repeat 5 28 0 4 1184 1386 76 38 0 chr11 78641720 78641904 -43201952 - B2_Mm2 SINE B2 -4 191 1 4 1184 585 238 44 54 chr11 78641904 78642064 -43201792 - ID_B1 SINE B4 -69 223 73 4 1184 484 244 16 16 chr11 78642053 78642174 -43201682 - RSINE1 SINE B4 0 165 45 4 1184 250 317 0 12 chr11 78642432 78642515 -43201341 - ID4_ SINE ID 0 83 2 4 1184 525 273 60 43 chr11 78642557 78642741 -43201115 + MIRb SINE MIR 15 201 -67 4 1184 208 325 212 6 chr11 78642997 78643167 -43200689 + L3 LINE CR1 3771 3975 -514 4 1185 1042 100 21 0 chr11 78643430 78643570 -43200286 - B1_Mur4 SINE Alu -6 144 2 4 1185 351 196 24 12 chr11 78644232 78644397 -43199459 + (CA)n Simple_repeat Simple_repeat 1 167 0 4 1185 33 25 0 0 chr11 78645538 78645578 -43198278 + AT_rich Low_complexity Low_complexity 1 40 0 4 1185 340 163 0 5 chr11 78645590 78645654 -43198202 - B2_Mm2 SINE B2 -107 109 48 4 1185 272 254 92 78 chr11 78645850 78645991 -43197865 - B1_Mur3 SINE Alu 0 149 7 4 1185 812 250 41 20 chr11 78645880 78646076 -43197780 - ID_B1 SINE B4 -24 200 1 4 1185 572 279 7 33 chr11 78647073 78647225 -43196631 + RSINE1 SINE B4 3 150 -15 4 1185 369 0 0 0 chr11 78647237 78647278 -43196578 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1185 562 236 62 75 chr11 78647289 78647449 -43196407 + B3A SINE B2 40 197 -1 4 1185 760 199 14 34 chr11 78647558 78647704 -43196152 + B1_Mm SINE Alu 5 147 0 4 1185 242 250 17 0 chr11 78647704 78647764 -43196092 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 4 1185 616 232 136 38 chr11 78648179 78648363 -43195493 - B3 SINE B2 -13 203 2 4 1185 207 0 0 0 chr11 78648367 78648390 -43195466 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 4 1185 238 222 22 43 chr11 78648394 78648482 -43195374 - B1F1 SINE Alu -8 141 31 4 1185 288 307 34 0 chr11 78648483 78648571 -43195285 + MIR SINE MIR 46 136 -126 4 1185 396 120 281 9 chr11 78648765 78648879 -43194977 - B2_Mm2 SINE B2 -2 193 49 4 1185 1123 68 105 6 chr11 78648935 78649097 -43194759 - B2_Mm1t SINE B2 -14 179 2 4 1185 180 0 0 0 chr11 78649693 78649713 -43194143 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1185 540 208 174 0 chr11 78649885 78650029 -43193827 + B4A SINE B4 1 169 -123 4 1185 324 0 0 0 chr11 78650043 78650079 -43193777 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 4 1185 360 276 83 6 chr11 78650219 78650376 -43193480 + L1MC4 LINE L1 7735 7903 -139 4 1185 373 191 40 30 chr11 78650441 78650589 -43193267 + B3 SINE B2 1 215 -1 4 1185 888 178 48 5 chr11 78650598 78650784 -43193072 + B2_Mm2 SINE B2 1 194 -1 4 1185 894 171 7 0 chr11 78650831 78650971 -43192885 + B1_Mur1 SINE Alu 9 149 0 4 1185 899 223 122 0 chr11 78651845 78652074 -43191782 - MTD LTR MaLR -154 265 9 4 1185 242 274 95 0 chr11 78652221 78652305 -43191551 + BC1_Mm scRNA scRNA 3 94 -58 4 1185 194 275 0 56 chr11 78653016 78653070 -43190786 + MIRb SINE MIR 22 72 -196 4 1185 375 236 34 76 chr11 78653694 78653813 -43190043 - PB1D9 SINE Alu 0 120 7 4 1185 180 0 0 0 chr11 78653815 78653835 -43190021 + (CTG)n Simple_repeat Simple_repeat 1 20 0 4 1185 579 263 9 0 chr11 78653848 78653962 -43189894 - RSINE1 SINE B4 -48 117 3 4 1185 751 217 70 100 chr11 78653989 78654189 -43189667 - B3A SINE B2 -3 195 2 4 1185 1141 115 23 38 chr11 78654739 78654950 -43188906 + B2_Mm2 SINE B2 8 212 -4 4 1185 209 194 0 0 chr11 78654977 78655013 -43188843 + GA-rich Low_complexity Low_complexity 3 38 0 4 1185 453 330 39 85 chr11 78655136 78655394 -43188462 - B4A SINE B4 0 292 47 4 1185 348 279 113 20 chr11 78656036 78656186 -43187670 + RSINE1 SINE B4 2 165 0 4 1185 662 228 89 6 chr11 78656246 78656414 -43187442 + B3A SINE B2 1 182 -16 4 1185 972 140 60 27 chr11 78656634 78656818 -43187038 + B2_Mm2 SINE B2 1 190 -5 4 1185 257 75 25 0 chr11 78656866 78656906 -43186950 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 1185 373 138 0 0 chr11 78656937 78656995 -43186861 - RSINE1 SINE B4 -105 60 3 4 1185 328 276 111 8 chr11 78657688 78657805 -43186051 - RMER15 LTR ERVL -15 560 432 4 1185 369 62 0 0 chr11 78658215 78658263 -43185593 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 4 1185 1232 42 7 0 chr11 78659063 78659207 -43184649 - B1_Mm SINE Alu -1 146 2 4 1185 515 165 126 0 chr11 78659290 78659393 -43184463 + B1_Mus1 SINE Alu 34 149 0 4 1185 667 265 93 11 chr11 78660170 78660353 -43183503 + B3A SINE B2 1 198 0 4 1185 257 324 9 69 chr11 78660532 78660551 -43183305 + MT2B2 LTR ERVL 147 158 -426 4 1185 508 230 35 26 chr11 78660551 78660667 -43183189 + PB1D10 SINE Alu 1 117 0 4 1185 820 227 49 0 chr11 78660731 78660870 -43182986 - B3 SINE B2 -12 204 58 4 1185 833 102 56 35 chr11 78660870 78661013 -43182843 + B1_Mus1 SINE Alu 3 148 0 4 1185 258 204 0 0 chr11 78661041 78661085 -43182771 - B3 SINE B2 -171 45 2 4 1185 618 14 0 0 chr11 78661732 78661803 -43182053 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1185 260 254 51 0 chr11 78663020 78663079 -43180777 + B1F SINE Alu 41 102 -47 4 1185 635 136 18 26 chr11 78663134 78663247 -43180609 - B1_Mur3 SINE Alu -5 144 33 4 1185 28 58 0 28 chr11 78663271 78663291 -43180565 + AT_rich Low_complexity Low_complexity 1 20 0 4 1185 1321 72 33 0 chr11 78663291 78663472 -43180384 - B2_Mm1t SINE B2 -5 188 2 4 1185 538 243 204 22 chr11 78663472 78663653 -43180203 - B3 SINE B2 -2 214 1 4 1185 28 58 0 28 chr11 78663653 78663702 -43180154 + AT_rich Low_complexity Low_complexity 1 48 0 4 1185 239 238 106 45 chr11 78663729 78663795 -43180061 + ID_B1 SINE B4 103 172 -52 4 1185 216 269 94 82 chr11 78663795 78663814 -43180042 + PB1D10 SINE Alu 22 107 -10 4 1185 455 301 88 56 chr11 78663959 78664244 -43179612 - RLTR12B LTR ERVK -230 298 5 4 1185 293 169 32 48 chr11 78664221 78664283 -43179573 + ID_B1 SINE B4 141 201 -23 4 1185 582 258 26 7 chr11 78664439 78664591 -43179265 + RSINE1 SINE B4 3 157 -8 4 1185 1777 158 149 3 chr11 78664890 78665252 -43178604 - RLTR9F LTR ERVK 0 415 1 4 1185 529 289 71 104 chr11 78665652 78665768 -43178088 - B4A SINE B4 -1 291 178 4 1185 468 0 0 0 chr11 78665768 78665820 -43178036 + (CCCCCA)n Simple_repeat Simple_repeat 3 54 0 4 1185 529 289 71 104 chr11 78665820 78665870 -43177986 - B4A SINE B4 -115 177 122 4 1185 1025 162 54 54 chr11 78665870 78666092 -43177764 + URR1A DNA MER1_type 1 222 -4 4 1185 529 289 71 104 chr11 78666092 78666221 -43177635 - B4A SINE B4 -171 121 5 4 1185 1191 42 0 34 chr11 78666633 78666781 -43177075 - B1_Mus1 SINE Alu -5 143 1 4 1185 209 57 29 0 chr11 78666849 78666884 -43176972 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1185 26 30 0 0 chr11 78666884 78666917 -43176939 + AT_rich Low_complexity Low_complexity 1 33 0 4 1185 410 197 26 0 chr11 78666917 78666993 -43176863 - B3 SINE B2 -134 82 5 4 1185 283 219 129 98 chr11 78667002 78667134 -43176722 - B3 SINE B2 0 216 81 4 1185 1221 54 0 0 chr11 78667182 78667329 -43176527 - B1_Mus1 SINE Alu 0 148 2 4 1185 281 307 118 28 chr11 78667383 78667527 -43176329 - MLT1H LTR MaLR -392 157 1 4 1185 291 263 78 13 chr11 78667719 78667796 -43176060 - B1F2 SINE Alu -67 82 1 4 1185 747 141 85 15 chr11 78667978 78668108 -43175748 - B1_Mur3 SINE Alu -10 139 1 4 1185 188 200 18 0 chr11 78668438 78668493 -43175363 + GA-rich Low_complexity Low_complexity 2 57 0 4 1185 236 250 31 0 chr11 78668619 78668683 -43175173 + ID_B1 SINE B4 86 151 -73 4 1185 267 167 66 16 chr11 78668685 78668746 -43175110 + B3 SINE B2 153 216 0 4 1185 308 238 0 0 chr11 78668980 78669043 -43174813 - ID_B1 SINE B4 -4 220 158 4 1185 1002 251 152 63 chr11 78669208 78669294 -43174562 + RMER5 LTR ERV1 33 117 -417 4 1185 932 100 200 0 chr11 78669294 78669454 -43174402 - B2_Mm1t SINE B2 0 193 2 4 1185 1002 251 152 63 chr11 78669454 78669827 -43174029 + RMER5 LTR ERV1 118 533 -1 4 1185 218 224 20 0 chr11 78670188 78670237 -43173619 - B3 SINE B2 -101 115 66 4 1185 1379 65 42 21 chr11 78670263 78670453 -43173403 + B2_Mm2 SINE B2 2 195 0 4 1185 476 280 75 11 chr11 78670588 78670776 -43173080 + L1MD2 LINE L1 5795 5994 -365 4 1185 1079 62 0 0 chr11 78670780 78670908 -43172948 + B1_Mus1 SINE Alu 2 129 -19 4 1185 369 0 0 0 chr11 78670912 78670953 -43172903 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1185 551 198 0 19 chr11 78670959 78671081 -43172775 + B3A SINE B2 1 111 -105 4 1185 242 169 0 15 chr11 78671457 78671523 -43172333 + CT-rich Low_complexity Low_complexity 2 66 0 5 1185 907 88 0 34 chr11 78671532 78671825 -43172031 + (TG)n Simple_repeat Simple_repeat 1 282 0 5 1185 273 297 29 38 chr11 78671887 78671992 -43171864 + RMER10A LTR ERVL 322 425 -17 5 1185 361 233 47 0 chr11 78672846 78672932 -43170924 + RLTR19-int LTR ERVK 3598 3687 -2450 5 1185 414 250 20 0 chr11 78672934 78673086 -43170770 + (TATATG)n Simple_repeat Simple_repeat 2 156 0 5 1185 413 265 18 85 chr11 78673094 78673259 -43170597 + RLTR19-int LTR ERVK 3691 3844 -2293 5 1185 394 286 52 8 chr11 78674518 78674652 -43169204 + RLTR19-int LTR ERVK 4238 4377 -1760 5 1185 270 278 88 142 chr11 78675089 78675280 -43168576 + RMER10A LTR ERVL 18 209 -233 5 1185 290 24 48 0 chr11 78675287 78675329 -43168527 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1185 270 278 88 142 chr11 78675329 78675369 -43168487 + RMER10A LTR ERVL 210 242 -200 5 1185 760 176 36 14 chr11 78675369 78675459 -43168397 - B1_Mur3 SINE Alu -9 140 6 5 1185 963 147 59 11 chr11 78675515 78675701 -43168155 - B2_Mm2 SINE B2 0 195 1 5 1185 278 286 100 0 chr11 78675760 78675830 -43168026 - ID4 SINE ID 0 83 7 5 1185 24 0 0 0 chr11 78675972 78675996 -43167860 + AT_rich Low_complexity Low_complexity 1 24 0 5 1185 2246 149 168 35 chr11 78676009 78676286 -43167570 + RMER4B LTR ERVK 34 317 -268 5 1185 953 121 0 22 chr11 78676286 78676464 -43167392 + (GAA)n Simple_repeat Simple_repeat 1 174 0 5 1185 279 0 0 0 chr11 78676474 78676505 -43167351 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1185 1098 73 0 0 chr11 78676505 78676642 -43167214 - B1_Mus1 SINE Alu -10 138 2 5 1185 2246 149 168 35 chr11 78676642 78676839 -43167017 + RMER4B LTR ERVK 329 583 -2 5 1185 275 346 20 31 chr11 78677063 78677172 -43166684 - MIR SINE MIR -102 160 55 5 1185 968 212 63 15 chr11 78677189 78677395 -43166461 + B3 SINE B2 1 216 0 5 1185 744 238 82 19 chr11 78677874 78678080 -43165776 - ID_B1 SINE B4 -4 220 2 5 1185 2590 188 54 62 chr11 78678959 78679510 -43164346 - RMER15 LTR ERVL 0 575 29 5 1185 632 164 0 15 chr11 78679603 78679733 -43164123 + CT-rich Low_complexity Low_complexity 3 130 0 5 1185 604 48 11 67 chr11 78679736 78679826 -43164030 - B1_Mur4 SINE Alu -7 143 59 5 1185 626 278 56 5 chr11 78679854 78680067 -43163789 - RMER15-int LTR ERVL -259 4740 4517 5 1185 727 257 25 51 chr11 78680158 78680355 -43163501 - Lx8 LINE L1 -1070 6403 6212 5 1185 796 342 16 60 chr11 78680371 78680526 -43163330 - RMER15-int LTR ERVL -2565 2434 2288 5 1185 1371 69 16 16 chr11 78680526 78680718 -43163138 - B2_Mm1a SINE B2 -1 192 1 5 1185 796 329 310 71 chr11 78680718 78681036 -43162820 - RMER15-int LTR ERVL -2712 2287 1892 5 1185 2488 184 143 4 chr11 78681182 78681701 -43162155 + RMER20B LTR ERVK 1 591 -36 5 1185 460 257 0 0 chr11 78681823 78681924 -43161932 - RMER15-int LTR ERVL -3595 1404 1304 5 1185 383 220 8 3 chr11 78681925 78682011 -43161845 - RSINE1 SINE B4 -203 89 2 5 1185 413 144 14 2 chr11 78682020 78682091 -43161765 - B1_Mur1 SINE Alu -7 142 74 5 1185 294 267 13 0 chr11 78682090 78682165 -43161691 + B1_Mur3 SINE Alu 9 84 -65 5 1185 1185 306 80 8 chr11 78682395 78682793 -43161063 + Lx8 LINE L1 6214 6640 -833 5 1185 284 0 0 27 chr11 78682798 78682835 -43161021 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 5 1185 880 109 43 14 chr11 78682858 78682997 -43160859 - B2_Mm2 SINE B2 -50 145 3 5 1185 1233 14 7 7 chr11 78683029 78683176 -43160680 + B1_Mm SINE Alu 1 147 0 5 1185 282 87 0 0 chr11 78683176 78683222 -43160634 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1185 1661 301 49 25 chr11 78683222 78683726 -43160130 + Lx7 LINE L1 6635 7152 -544 5 1185 3072 54 34 0 chr11 78683726 78684113 -43159743 - MTB LTR MaLR 0 400 1 5 1185 1661 301 49 25 chr11 78684113 78684204 -43159652 + Lx7 LINE L1 7153 7243 -453 5 1185 1458 159 49 91 chr11 78684204 78684632 -43159224 - RMER17C LTR ERVK 0 410 1 5 1185 289 100 0 12 chr11 78684651 78684693 -43159163 - ORR1B1 LTR MaLR -10 384 334 5 1185 293 0 0 26 chr11 78684693 78684731 -43159125 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 5 1185 1053 81 94 0 chr11 78684733 78684893 -43158963 - B2_Mm1t SINE B2 -17 176 2 5 1185 1604 54 14 5 chr11 78684899 78685121 -43158735 - L1_Mus3 LINE L1 -2 6636 6413 5 1185 279 100 0 259 chr11 78685121 78685152 -43158704 - ORR1B1 LTR MaLR -51 333 312 5 1185 1412 75 32 0 chr11 78685152 78685339 -43158517 + B2_Mm2 SINE B2 2 194 -1 5 1185 222 222 55 14 chr11 78685379 78685452 -43158404 + ID2 SINE ID 2 77 -6 5 1185 252 250 108 11 chr11 78685507 78685600 -43158256 + MIRb SINE MIR 47 148 -120 5 1185 246 203 297 0 chr11 78686037 78686111 -43157745 - B1F1 SINE Alu -39 110 15 5 1185 2477 141 5 40 chr11 78686118 78686540 -43157316 + MTB_Mm LTR MaLR 1 407 0 5 1185 256 250 17 0 chr11 78686926 78686986 -43156870 + ID_B1 SINE B4 77 137 -87 5 1185 242 330 9 9 chr11 78686987 78687094 -43156762 - L1MC LINE L1 -2227 5655 5549 5 1185 207 188 11 91 chr11 78687203 78687258 -43156598 + T-rich Low_complexity Low_complexity 26 81 0 5 1185 881 126 104 0 chr11 78687258 78687393 -43156463 - B1_Mur4 SINE Alu 0 150 2 5 1185 207 188 11 91 chr11 78687393 78687425 -43156431 + T-rich Low_complexity Low_complexity 1 25 0 5 1185 1016 37 97 0 chr11 78687425 78687559 -43156297 - B1_Mus2 SINE Alu 0 147 1 5 1185 570 122 0 0 chr11 78687618 78687716 -43156140 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 1185 270 243 186 62 chr11 78687727 78687872 -43155984 - RSINE1 SINE B4 0 165 3 5 1185 192 40 0 0 chr11 78687978 78688003 -43155853 + (C)n Simple_repeat Simple_repeat 1 25 0 5 1185 288 351 85 82 chr11 78688008 78688446 -43155410 + L2a LINE L2 2923 3410 -16 5 1185 2988 164 37 46 chr11 78688475 78689038 -43154818 - RMER4B LTR ERVK -11 574 17 5 1185 369 0 0 0 chr11 78689038 78689079 -43154777 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1185 180 125 0 0 chr11 78689096 78689128 -43154728 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1185 293 304 12 37 chr11 78689138 78689220 -43154636 - ID_B1 SINE B4 -45 179 100 5 1185 351 98 0 0 chr11 78689266 78689317 -43154539 - B2_Mm2 SINE B2 -144 51 1 5 1185 432 158 0 0 chr11 78689379 78689455 -43154401 + GA-rich Low_complexity Low_complexity 2 77 0 5 1185 238 194 250 0 chr11 78690749 78690821 -43153035 + B3A SINE B2 71 160 -38 5 1185 423 0 0 0 chr11 78690826 78690873 -43152983 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1185 663 206 0 49 chr11 78691265 78691408 -43152448 - B3A SINE B2 -5 193 58 5 1185 810 119 0 0 chr11 78691461 78691595 -43152261 + (CA)n Simple_repeat Simple_repeat 2 135 0 5 1185 471 165 71 0 chr11 78691642 78691727 -43152129 + B3 SINE B2 2 92 -124 5 1185 324 0 0 0 chr11 78691967 78692003 -43151853 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1185 659 245 12 55 chr11 78692015 78692179 -43151677 - B3A SINE B2 -38 160 4 5 1185 380 306 121 25 chr11 78692402 78692600 -43151256 - L1M2 LINE L1 -1038 5105 4889 5 1185 657 252 85 14 chr11 78692609 78692803 -43151053 - B3 SINE B2 -25 191 5 5 1185 435 212 24 0 chr11 78693205 78693290 -43150566 - B3A SINE B2 -111 87 1 5 1185 455 323 18 36 chr11 78693367 78693534 -43150322 - RSINE1 SINE B4 0 165 2 5 1185 713 57 0 9 chr11 78694170 78694348 -43149508 - L1Md_F2 LINE L1 0 6582 6473 5 1185 1023 109 7 0 chr11 78694348 78694495 -43149361 - B1_Mus1 SINE Alu 0 148 1 5 1185 423 0 0 0 chr11 78694510 78694557 -43149299 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1185 351 65 0 0 chr11 78694557 78694602 -43149254 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1185 375 317 0 40 chr11 78694602 78694753 -43149103 - B3A SINE B2 -52 146 2 5 1185 535 286 40 29 chr11 78694794 78694967 -43148889 + ID_B1 SINE B4 47 221 -3 5 1185 194 337 52 10 chr11 78694986 78695082 -43148774 + L2 LINE L2 2665 2764 -655 5 1185 492 18 0 0 chr11 78695103 78695160 -43148696 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1185 769 213 40 0 chr11 78695161 78695311 -43148545 - B3A SINE B2 -42 156 1 5 1185 548 109 186 10 chr11 78695313 78695415 -43148441 - B1_Mus1 SINE Alu 0 120 1 5 1185 285 253 78 33 chr11 78695336 78695426 -43148430 - MT2B LTR ERVL -361 240 147 5 1185 567 66 0 0 chr11 78695739 78695815 -43148041 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1185 217 280 26 115 chr11 78695825 78695938 -43147918 - RSINE1 SINE B4 -29 136 34 5 1185 592 205 105 8 chr11 78696346 78696500 -43147356 + B3A SINE B2 4 162 -31 5 1185 331 184 9 27 chr11 78696589 78696701 -43147155 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 1185 334 217 22 88 chr11 78696702 78696793 -43147063 + HAL1-3A_ME LINE L1 1976 2060 -798 5 1185 773 143 0 0 chr11 78696857 78696969 -43146887 - B1_Mus2 SINE Alu -35 112 1 5 1185 296 193 102 0 chr11 78696969 78697057 -43146799 - RMER10A LTR ERVL -3 439 343 5 1185 345 266 45 155 chr11 78697029 78697201 -43146655 - RMER10A LTR ERVL -262 180 27 5 1185 1237 34 7 0 chr11 78697201 78697347 -43146509 + B1_Mm SINE Alu 1 147 0 5 1185 345 266 45 155 chr11 78697347 78697374 -43146482 - RMER10A LTR ERVL -416 26 3 5 1185 207 0 0 0 chr11 78697628 78697651 -43146205 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1185 928 224 70 44 chr11 78697655 78697865 -43145991 + B4 SINE B4 1 216 -76 5 1185 420 20 0 0 chr11 78697865 78697914 -43145942 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 5 1185 928 224 70 44 chr11 78697914 78697974 -43145882 + B4 SINE B4 217 278 -14 5 1185 424 288 40 56 chr11 78698176 78698301 -43145555 + ID_B1 SINE B4 100 222 -2 5 1185 1343 87 38 0 chr11 78698307 78698491 -43145365 + B2_Mm2 SINE B2 2 192 -3 5 1185 576 0 0 0 chr11 78698492 78698556 -43145300 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 5 1185 3110 83 131 4 chr11 78698561 78699033 -43144823 + RMER16 LTR ERVK 2 533 0 5 1185 415 333 102 37 chr11 78699147 78699362 -43144494 - B4A SINE B4 -55 237 9 5 1185 202 286 48 0 chr11 78699447 78699510 -43144346 - L4 LINE RTE -203 1826 1761 5 1185 1206 231 35 20 chr11 78699610 78699951 -43143905 - L1_Mur3 LINE L1 -6492 1220 875 5 1185 252 0 0 0 chr11 78700569 78700597 -43143259 + (C)n Simple_repeat Simple_repeat 1 28 0 5 1185 597 238 159 121 chr11 78701226 78701408 -43142448 + B3 SINE B2 4 192 -3 6 1185 774 152 22 15 chr11 78701413 78701547 -43142309 + B1_Mus1 SINE Alu 1 135 -13 6 1185 260 27 27 0 chr11 78701547 78701584 -43142272 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 6 1185 1365 82 0 62 chr11 78701584 78701792 -43142064 + B2_Mm2 SINE B2 1 195 0 6 1185 23 0 0 0 chr11 78701886 78701909 -43141947 + AT_rich Low_complexity Low_complexity 1 23 0 6 1185 659 242 0 128 chr11 78701909 78702113 -43141743 + B3A SINE B2 5 182 -16 6 1185 685 171 34 0 chr11 78702127 78702244 -43141612 + B1_Mur2 SINE Alu 9 129 -20 6 1185 23 54 0 0 chr11 78702252 78702289 -43141567 + AT_rich Low_complexity Low_complexity 1 37 0 6 1185 571 326 7 0 chr11 78702384 78702519 -43141337 - B1F2 SINE Alu -12 137 2 6 1185 239 301 0 8 chr11 78702962 78703096 -43140760 + ORR1B1-int LTR MaLR 622 754 -755 6 1185 1127 49 7 0 chr11 78702993 78703135 -43140721 + B1_Mus1 SINE Alu 6 148 0 6 1185 367 19 19 19 chr11 78703135 78703188 -43140668 + (CAAAAA)n Simple_repeat Simple_repeat 6 58 0 6 1185 1517 169 46 77 chr11 78703193 78703497 -43140359 - RLTR40 LTR ERVK -25 792 499 6 1185 519 17 0 0 chr11 78703497 78703557 -43140299 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 6 1185 1517 169 46 77 chr11 78703557 78703578 -43140278 - RLTR40 LTR ERVK -319 498 478 6 1185 189 0 0 0 chr11 78704301 78704322 -43139534 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 6 1185 1331 87 22 0 chr11 78704324 78704507 -43139349 - B2_Mm2 SINE B2 -7 188 2 6 1185 2399 142 106 0 chr11 78704795 78704807 -43139049 - RLTR40 LTR ERVK -321 496 485 6 1185 1136 112 28 17 chr11 78704807 78704828 -43139028 - B2_Mm1a SINE B2 -9 184 162 6 1185 338 0 0 23 chr11 78704828 78704871 -43138985 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 6 1185 1136 112 28 17 chr11 78704871 78705030 -43138826 - B2_Mm1a SINE B2 -32 161 2 6 1185 2399 142 106 0 chr11 78705030 78705461 -43138395 - RLTR40 LTR ERVK -333 484 7 6 1185 324 261 29 0 chr11 78705545 78705614 -43138242 + ID4_ SINE ID 2 72 -11 6 1185 222 236 18 18 chr11 78705621 78705677 -43138179 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1185 207 338 27 0 chr11 78705790 78705864 -43137992 - MIRm SINE MIR -116 160 85 6 1185 309 241 71 24 chr11 78705976 78706061 -43137795 - L1M3 LINE L1 -1662 4481 4393 6 1185 242 300 86 0 chr11 78706072 78706142 -43137714 - ID4 SINE ID -3 80 5 6 1185 365 300 94 33 chr11 78706188 78706214 -43137642 - L1M3 LINE L1 -1722 4418 4393 6 1185 1133 77 0 0 chr11 78706214 78706357 -43137499 - B1_Mus2 SINE Alu 0 147 5 6 1185 365 300 94 33 chr11 78706357 78706575 -43137281 - L1M3 LINE L1 -1748 4392 4159 6 1185 312 91 0 0 chr11 78706677 78706721 -43137135 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1185 360 347 0 0 chr11 78706721 78706819 -43137037 - RSINE1 SINE B4 -24 141 44 6 1185 253 371 114 0 chr11 78706865 78706884 -43136972 - B3A SINE B2 0 198 4 6 1185 595 308 6 0 chr11 78706884 78707040 -43136816 - RSINE1 SINE B4 -4 161 5 6 1185 228 171 0 0 chr11 78707078 78707119 -43136737 - L1M3 LINE L1 -1987 4159 4119 6 1185 772 253 31 106 chr11 78707120 78707328 -43136528 - L1M3 LINE L1 -2370 3770 3559 6 1185 1338 108 0 11 chr11 78707328 78707516 -43136340 + B2_Mm2 SINE B2 2 187 -8 6 1185 772 253 31 106 chr11 78707516 78707587 -43136269 - L1M3 LINE L1 -2582 3558 3506 6 1185 275 49 0 24 chr11 78707587 78707629 -43136227 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1185 772 253 31 106 chr11 78707629 78707648 -43136208 - L1M3 LINE L1 -2635 3505 3501 6 1185 1106 246 25 28 chr11 78707648 78707932 -43135924 - B4 SINE B4 -8 284 2 6 1185 772 253 31 106 chr11 78707932 78708047 -43135809 - L1M3 LINE L1 -2640 3500 3386 6 1185 276 30 0 0 chr11 78708235 78708268 -43135588 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1185 1101 58 0 7 chr11 78708268 78708408 -43135448 - B1_Mus2 SINE Alu -8 139 1 6 1185 590 314 51 20 chr11 78709372 78709567 -43134289 - B4A SINE B4 -72 220 20 6 1185 3015 194 101 16 chr11 78709567 78710192 -43133664 - RMER1B Other Other -26 1040 363 6 1185 982 269 106 41 chr11 78710196 78710811 -43133045 - RMER1B Other Other -547 795 38 6 1185 306 0 0 0 chr11 78710864 78710898 -43132958 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1185 2312 85 82 0 chr11 78710915 78711245 -43132611 + IAPEY2_LTR LTR ERVK 1 357 0 6 1185 425 96 3 7 chr11 78711245 78711320 -43132536 - B1_Mus2 SINE Alu -24 123 52 6 1185 236 196 43 0 chr11 78711345 78711391 -43132465 - B4A SINE B4 -244 48 1 6 1185 345 268 88 9 chr11 78711391 78711504 -43132352 + MER58B DNA MER1_type 220 341 0 6 1185 713 197 8 0 chr11 78711652 78711779 -43132077 - B1_Mur1 SINE Alu -3 146 19 6 1185 245 215 97 0 chr11 78711779 78711872 -43131984 - L1M5 LINE L1 -1679 4467 4366 6 1185 975 184 46 5 chr11 78711898 78712095 -43131761 - B3 SINE B2 -11 205 1 6 1185 253 253 59 24 chr11 78712107 78712192 -43131664 - L1MC4a LINE L1 0 7882 7795 6 1185 332 230 51 7 chr11 78712192 78712285 -43131571 + ORR1E LTR MaLR 1 101 -273 6 1185 1802 111 34 115 chr11 78712285 78712642 -43131214 - ORR1A4 LTR MaLR 0 329 2 6 1185 246 254 150 26 chr11 78712642 78712681 -43131175 + ORR1E LTR MaLR 102 146 -228 6 1185 291 232 35 58 chr11 78712801 78712888 -43130968 + MTE2a LTR MaLR 282 366 -13 6 1185 612 73 0 0 chr11 78712934 78713016 -43130840 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1185 267 289 89 97 chr11 78713072 78713263 -43130593 - L1M5 LINE L1 -1781 4365 4178 6 1185 1231 48 0 0 chr11 78713263 78713410 -43130446 - B1_Mus2 SINE Alu 0 147 1 6 1185 267 289 89 97 chr11 78713410 78713567 -43130289 - L1M5 LINE L1 -1969 4177 4020 6 1185 348 291 101 78 chr11 78713778 78713794 -43130062 - B2_Mm1t SINE B2 -10 183 168 6 1185 249 98 0 0 chr11 78713794 78713835 -43130021 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1185 710 263 32 1 chr11 78713835 78713997 -43129859 - B3 SINE B2 -26 167 1 6 1185 949 313 16 120 chr11 78715012 78715146 -43128710 + MTE2a LTR MaLR 1 124 -295 6 1185 1215 42 28 0 chr11 78715146 78715290 -43128566 - B1_Mus1 SINE Alu 0 148 1 6 1185 1091 219 21 97 chr11 78715290 78715580 -43128276 + MTE2a LTR MaLR 74 381 -38 6 1185 658 241 82 43 chr11 78715617 78715825 -43128031 + RMER15 LTR ERVL 346 561 -14 6 1185 226 277 24 104 chr11 78715977 78716102 -43127754 - L3 LINE CR1 -1583 2906 2792 6 1185 927 231 18 49 chr11 78716258 78716481 -43127375 - B3 SINE B2 0 216 1 6 1185 962 209 18 58 chr11 78716519 78716743 -43127113 + B3 SINE B2 1 215 -1 6 1185 798 71 212 0 chr11 78716765 78716878 -43126978 + B1_Mus2 SINE Alu 1 137 -10 6 1185 311 240 13 13 chr11 78718049 78718125 -43125731 + PB1D10 SINE Alu 42 117 0 6 1185 1100 216 9 5 chr11 78718202 78718416 -43125440 - ID_B1 SINE B4 -7 217 3 6 1185 511 317 19 58 chr11 78719011 78719165 -43124691 + RSINE1 SINE B4 17 164 -1 6 1185 642 234 8 0 chr11 78719468 78719596 -43124260 + RSINE1 SINE B4 2 130 -35 6 1185 525 32 0 0 chr11 78719837 78719900 -43123956 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1185 615 258 6 37 chr11 78719946 78720066 -43123790 + B3A SINE B2 2 117 -81 6 1185 1857 138 104 56 chr11 78720066 78720119 -43123737 - ORR1B1 LTR MaLR 0 394 353 6 1185 1494 38 49 0 chr11 78720119 78720303 -43123553 - B2_Mm1a SINE B2 0 193 1 6 1185 1857 138 104 56 chr11 78720303 78720625 -43123231 - ORR1B1 LTR MaLR -42 352 1 6 1185 615 258 30 56 chr11 78720625 78720724 -43123132 + B3A SINE B2 116 216 0 6 1185 751 173 57 7 chr11 78720745 78720885 -43122971 + B1_Mus2 SINE Alu 1 147 0 6 1185 580 138 8 8 chr11 78720886 78721003 -43122853 + GA-rich Low_complexity Low_complexity 3 119 0 6 1185 1362 50 84 0 chr11 78721025 78721204 -43122652 + B2_Mm2 SINE B2 1 194 -1 6 1185 571 246 21 35 chr11 78721232 78721375 -43122481 + B1_Mur1 SINE Alu 1 141 -8 6 1185 263 186 0 0 chr11 78721383 78721426 -43122430 + B2_Mm2 SINE B2 1 43 -152 6 1185 688 271 0 0 chr11 78721464 78721597 -43122259 - RSINE1 SINE B4 0 165 33 6 1185 1416 94 5 0 chr11 78721871 78722063 -43121793 - B2_Mm1a SINE B2 0 193 1 6 1185 252 86 0 0 chr11 78722460 78722495 -43121361 + (TCC)n Simple_repeat Simple_repeat 2 36 0 6 1185 324 48 0 0 chr11 78722507 78722549 -43121307 + (TATG)n Simple_repeat Simple_repeat 1 42 0 6 1185 419 327 0 9 chr11 78722566 78722674 -43121182 - PB1D7 SINE Alu -13 107 1 6 1185 305 174 14 0 chr11 78722968 78723037 -43120819 + CT-rich Low_complexity Low_complexity 4 73 0 6 1185 355 253 13 0 chr11 78723039 78723118 -43120738 - ID4 SINE ID -1 82 3 6 1185 229 167 36 18 chr11 78723122 78723177 -43120679 + CT-rich Low_complexity Low_complexity 1 56 0 6 1185 429 321 7 15 chr11 78723180 78723316 -43120540 - B1_Mur1 SINE Alu -14 135 1 6 1185 586 301 43 24 chr11 78723344 78723599 -43120257 - L1M5 LINE L1 -992 5154 4895 6 1185 1644 36 0 0 chr11 78726981 78727173 -43116683 - B2_Mm1a SINE B2 0 193 2 6 1185 342 251 6 12 chr11 78727239 78727404 -43116452 + (TG)n Simple_repeat Simple_repeat 2 165 0 6 1185 373 267 11 0 chr11 78727412 78727502 -43116354 + (TATG)n Simple_repeat Simple_repeat 3 93 0 6 1185 682 264 24 36 chr11 78727505 78727670 -43116186 - RSINE1 SINE B4 -1 164 2 6 1185 182 77 77 0 chr11 78727704 78727743 -43116113 + T-rich Low_complexity Low_complexity 1 42 0 6 1185 264 196 0 0 chr11 78727885 78727931 -43115925 - B1F1 SINE Alu -101 48 3 6 1185 245 242 40 132 chr11 78727931 78727963 -43115893 - B4A SINE B4 -205 87 63 6 1185 188 287 124 38 chr11 78728418 78728523 -43115333 - MIR SINE MIR -67 141 28 6 1185 449 247 0 0 chr11 78728716 78728809 -43115047 - PB1D7 SINE Alu -1 119 27 6 1185 422 141 14 0 chr11 78728809 78728880 -43114976 + ID_B1 SINE B4 147 218 -6 6 1185 659 272 30 59 chr11 78730200 78730403 -43113453 - B3A SINE B2 0 198 2 6 1185 225 282 53 26 chr11 78730842 78730955 -43112901 + MIRm SINE MIR 24 139 -137 6 1185 659 287 97 0 chr11 78731038 78731243 -43112613 + MER2 DNA MER2_type 1 226 -119 6 1185 555 269 31 6 chr11 78731243 78731404 -43112452 + ID_B1 SINE B4 1 165 -59 6 1185 268 226 132 8 chr11 78731407 78731507 -43112349 + PB1D10 SINE Alu 9 118 -2 6 1185 378 228 0 12 chr11 78731521 78731601 -43112255 + ID4 SINE ID 5 83 0 6 1185 255 337 10 39 chr11 78731683 78731785 -43112071 - MIR SINE MIR -93 115 17 6 1185 957 239 69 118 chr11 78732804 78733011 -43110845 - B4 SINE B4 -2 290 69 6 1185 615 14 0 0 chr11 78733011 78733083 -43110773 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1185 957 239 69 118 chr11 78733083 78733179 -43110677 - B4 SINE B4 -224 68 3 6 1185 791 181 7 46 chr11 78733485 78733636 -43110220 - B1_Mus2 SINE Alu 0 147 3 7 1185 422 49 16 0 chr11 78733667 78733728 -43110128 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1185 402 21 0 0 chr11 78733728 78733774 -43110082 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1185 200 366 106 8 chr11 78734832 78734964 -43108892 - MIRc SINE MIR -99 169 25 7 1185 195 207 65 65 chr11 78736228 78736290 -43107566 + MIRc SINE MIR 66 127 -141 7 1185 181 341 21 32 chr11 78736808 78736902 -43106954 + MIRc SINE MIR 66 158 -110 7 1185 196 319 149 0 chr11 78737242 78737336 -43106520 - MIR SINE MIR -118 144 37 7 1185 210 351 19 31 chr11 78738378 78738496 -43105360 + MIR SINE MIR 80 200 -68 7 1185 390 258 31 0 chr11 78738937 78739034 -43104822 - B1F2 SINE Alu -41 108 9 7 1185 329 301 14 83 chr11 78738982 78739127 -43104729 - ID_B1 SINE B4 -83 141 7 7 1185 261 0 0 0 chr11 78740033 78740062 -43103794 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1185 430 286 79 0 chr11 78740130 78740256 -43103600 + ID_B1 SINE B4 86 221 -3 7 1185 248 233 120 65 chr11 78740316 78740408 -43103448 - PB1D10 SINE Alu 0 117 21 7 1185 376 286 63 21 chr11 78740431 78740574 -43103282 - MER31A LTR ERV1 -17 468 320 7 1185 632 181 35 0 chr11 78740840 78740956 -43102900 - B1_Mm SINE Alu -27 120 1 7 1185 288 170 0 0 chr11 78740956 78741009 -43102847 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1185 305 237 187 22 chr11 78741009 78741143 -43102713 - L1MCa LINE L1 -4549 1959 1804 7 1185 588 244 8 30 chr11 78741146 78741277 -43102579 - ID_B1 SINE B4 -2 222 95 7 1185 421 291 0 0 chr11 78741424 78741527 -43102329 - ID_B1 SINE B4 -17 207 105 7 1185 323 340 35 48 chr11 78741518 78741560 -43102296 + B4A SINE B4 50 89 -203 7 1185 630 169 0 1 chr11 78741560 78741679 -43102177 + B1_Mur2 SINE Alu 1 118 -2 7 1185 2069 113 0 16 chr11 78742413 78742736 -43101120 - ORR1A3 LTR MaLR -8 318 1 7 1185 1134 62 14 14 chr11 78743690 78743838 -43100018 + B1_Mus1 SINE Alu 1 148 0 7 1185 260 331 72 94 chr11 78743917 78743955 -43099901 + B4 SINE B4 48 223 -69 7 1185 539 242 63 9 chr11 78743955 78744097 -43099759 + B1_Mur2 SINE Alu 2 148 -2 7 1185 727 171 64 0 chr11 78744120 78744260 -43099596 + B1_Mur3 SINE Alu 1 149 0 7 1185 669 58 0 0 chr11 78744306 78744392 -43099464 + (GA)n Simple_repeat Simple_repeat 1 86 0 7 1185 483 246 45 0 chr11 78744467 78744577 -43099279 + ID_B1 SINE B4 102 216 -8 7 1185 199 286 80 23 chr11 78745381 78745488 -43098368 + MIRm SINE MIR 38 154 -114 7 1185 187 286 56 28 chr11 78745593 78745665 -43098191 - MIR3 SINE MIR -24 184 111 7 1185 248 0 0 30 chr11 78745805 78745838 -43098018 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1185 901 57 7 1 chr11 78745841 78745985 -43097871 - B1_Mus1 SINE Alu 0 150 3 7 1185 315 268 108 23 chr11 78746171 78746301 -43097555 + MIR SINE MIR 117 257 -5 7 1185 471 301 37 0 chr11 78746360 78746496 -43097360 - RSINE1 SINE B4 -23 142 2 7 1185 289 254 40 27 chr11 78747221 78747341 -43096515 + B1F SINE Alu 33 146 -4 7 1185 263 312 0 0 chr11 78747419 78747499 -43096357 - B1F SINE Alu -5 144 65 7 1185 360 0 0 0 chr11 78748109 78748149 -43095707 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1185 1554 72 0 5 chr11 78749483 78749679 -43094177 - B2_Mm2 SINE B2 0 195 1 7 1185 300 329 11 50 chr11 78750209 78750388 -43093468 - YREP_Mm Unknown Unknown -1455 357 186 7 1185 744 204 0 7 chr11 78750257 78750395 -43093461 + ID_B1 SINE B4 86 222 -2 7 1185 529 226 9 0 chr11 78750425 78750531 -43093325 + PB1D7 SINE Alu 1 107 -13 7 1185 269 226 15 46 chr11 78750542 78750607 -43093249 + 4.5SRNA scRNA scRNA 26 88 -6 7 1185 407 148 0 0 chr11 78750549 78750610 -43093246 + B1_Mur2 SINE Alu 36 96 -53 7 1185 450 0 0 0 chr11 78750811 78750861 -43092995 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1185 307 235 25 5 chr11 78751733 78751943 -43091913 + (TG)n Simple_repeat Simple_repeat 1 214 0 7 1185 633 241 12 47 chr11 78751944 78752114 -43091742 - RSINE1 SINE B4 0 165 2 7 1185 1200 36 0 0 chr11 78752194 78752332 -43091524 + B1_Mus1 SINE Alu 2 139 -9 7 1185 261 0 0 0 chr11 78752332 78752361 -43091495 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1185 300 352 63 27 chr11 78752436 78752658 -43091198 + L2a LINE L2 3001 3230 -196 7 1185 202 294 233 20 chr11 78752812 78752958 -43090898 - MIRb SINE MIR -80 188 8 7 1185 438 20 0 0 chr11 78753065 78753116 -43090740 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1185 981 229 37 5 chr11 78753147 78753362 -43090494 + ID_B1 SINE B4 2 223 -1 7 1185 734 236 21 0 chr11 78754371 78754515 -43089341 - RSINE1 SINE B4 -17 148 2 7 1185 468 241 8 33 chr11 78755477 78755597 -43088259 + PB1D10 SINE Alu 1 117 0 7 1185 273 336 8 34 chr11 78755769 78755886 -43087970 + Tigger5 DNA MER2_type 1 114 -2292 7 1185 1123 155 119 0 chr11 78755887 78756080 -43087776 - B3 SINE B2 0 216 1 7 1185 284 204 194 0 chr11 78756141 78756239 -43087617 - B1F SINE Alu -1 148 32 7 1185 470 307 52 7 chr11 78756255 78756409 -43087447 + Tigger5 DNA MER2_type 82 242 -2164 7 1185 369 293 0 121 chr11 78756405 78756450 -43087406 + Tigger5 DNA MER2_type 2291 2327 -79 7 1185 732 206 92 106 chr11 78756450 78756667 -43087189 - ID_B1 SINE B4 -10 214 1 7 1185 369 293 0 121 chr11 78756667 78756753 -43087103 + Tigger5 DNA MER2_type 2328 2406 0 7 1185 442 237 32 0 chr11 78757172 78757265 -43086591 - RSINE1 SINE B4 -64 101 6 7 1185 564 217 259 0 chr11 78757436 78757602 -43086254 - ID_B1 SINE B4 0 224 16 7 1185 1101 129 94 0 chr11 78757733 78757934 -43085922 - URR1A DNA MER1_type -1 225 6 7 1185 414 0 0 0 chr11 78759655 78759701 -43084155 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1185 469 254 119 0 chr11 78759704 78759830 -43084026 - RSINE1 SINE B4 -21 144 4 7 1185 407 283 19 0 chr11 78759872 78759978 -43083878 + PB1D10 SINE Alu 1 108 -9 7 1185 700 272 64 0 chr11 78760005 78760178 -43083678 + B3A SINE B2 1 184 -14 7 1185 312 127 0 35 chr11 78760259 78760316 -43083540 - B2_Mm2 SINE B2 -94 101 47 7 1185 1253 106 6 22 chr11 78760346 78760529 -43083327 - B2_Mm1t SINE B2 -12 181 2 7 1185 1271 90 39 11 chr11 78760571 78760750 -43083106 + B2_Mm2 SINE B2 3 186 -9 7 1185 749 229 191 0 chr11 78764949 78765261 -43078595 - MTEa LTR MaLR 0 379 8 7 1185 656 211 30 0 chr11 78765623 78765756 -43078100 + B1F SINE Alu 1 137 -12 7 1185 392 315 23 8 chr11 78765929 78766057 -43077799 - B1F SINE Alu -8 141 12 7 1185 912 244 198 31 chr11 78766563 78766922 -43076934 - MTD LTR MaLR 0 419 1 7 1185 187 364 83 0 chr11 78767091 78767212 -43076644 - MIR SINE MIR -121 141 11 7 1185 472 264 184 0 chr11 78769139 78769264 -43074592 - RSINE1 SINE B4 -15 150 3 7 1185 430 246 0 60 chr11 78769636 78769753 -43074103 - B1F2 SINE Alu -9 140 31 7 1185 525 262 8 8 chr11 78771823 78771950 -43071906 + ID_B1 SINE B4 98 224 0 7 1185 295 300 70 49 chr11 78772046 78772243 -43071613 - L2a LINE L2 -185 3190 2993 7 1185 315 219 12 47 chr11 78772326 78772412 -43071444 + PB1D10 SINE Alu 5 87 -30 7 1185 234 0 0 0 chr11 78772492 78772518 -43071338 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1185 25 0 0 0 chr11 78772601 78772626 -43071230 + AT_rich Low_complexity Low_complexity 1 25 0 7 1185 180 258 0 30 chr11 78773402 78773502 -43070354 + CT-rich Low_complexity Low_complexity 6 102 0 7 1185 27 29 0 0 chr11 78773692 78773726 -43070130 + AT_rich Low_complexity Low_complexity 1 34 0 7 1185 801 253 0 65 chr11 78774042 78774241 -43069615 + ID_B1 SINE B4 1 186 -38 7 1186 1008 219 100 13 chr11 78774688 78774919 -43068937 + B4A SINE B4 1 251 -41 7 1186 989 142 0 7 chr11 78774920 78775069 -43068787 + B1_Mus1 SINE Alu 1 148 0 7 1186 551 145 115 58 chr11 78775074 78775213 -43068643 + RMER10B LTR ERVL 204 350 -48 7 1186 1209 68 0 0 chr11 78775215 78775362 -43068494 + B1_Mus2 SINE Alu 1 147 0 7 1186 211 220 0 0 chr11 78775364 78775414 -43068442 + A-rich Low_complexity Low_complexity 1 50 0 7 1186 472 186 35 11 chr11 78775485 78775659 -43068197 + (CA)n Simple_repeat Simple_repeat 1 178 0 7 1186 210 241 0 33 chr11 78775667 78775757 -43068099 + (TA)n Simple_repeat Simple_repeat 1 87 0 7 1186 751 115 34 0 chr11 78775758 78775906 -43067950 + (CA)n Simple_repeat Simple_repeat 1 153 0 7 1186 360 213 27 0 chr11 78775959 78776034 -43067822 - PB1D10 SINE Alu -6 111 35 7 1186 258 254 0 0 chr11 78776040 78776099 -43067757 - MER5A DNA MER1_type -120 69 11 7 1186 1259 153 28 19 chr11 78777693 78777906 -43065950 + B3 SINE B2 1 215 -1 7 1186 382 219 150 31 chr11 78777906 78778032 -43065824 + B1F SINE Alu 1 142 -7 7 1186 223 340 31 31 chr11 78778335 78778432 -43065424 + MIRb SINE MIR 83 179 -89 7 1186 218 156 0 22 chr11 78778502 78778548 -43065308 + GA-rich Low_complexity Low_complexity 4 48 0 7 1186 1381 105 16 0 chr11 78778549 78778739 -43065117 + B2_Mm2 SINE B2 1 193 -2 7 1186 279 79 0 0 chr11 78778762 78778800 -43065056 + (GGA)n Simple_repeat Simple_repeat 1 38 0 7 1186 423 195 164 26 chr11 78778814 78778930 -43064926 + B1F SINE Alu 5 136 -13 8 1186 192 111 0 0 chr11 78778932 78778968 -43064888 + (CTAA)n Simple_repeat Simple_repeat 3 38 0 8 1186 1549 182 73 67 chr11 78779826 78780168 -43063688 + ORR1D1 LTR MaLR 1 344 -30 8 1186 296 277 58 19 chr11 78781192 78781295 -43062561 - B4A SINE B4 -161 131 25 8 1186 225 290 27 80 chr11 78781245 78781320 -43062536 - ID2 SINE ID -9 74 4 8 1186 189 0 0 0 chr11 78781464 78781485 -43062371 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1186 236 282 50 35 chr11 78781819 78781955 -43061901 - MIRm SINE MIR -87 189 52 8 1186 241 313 45 55 chr11 78782223 78782340 -43061516 - L2b LINE L2 -12 3414 3266 8 1186 414 69 0 0 chr11 78782713 78782771 -43061085 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 8 1186 300 294 11 56 chr11 78782771 78782861 -43060995 - PB1D10 SINE Alu -13 104 19 8 1186 331 294 0 56 chr11 78782793 78782883 -43060973 - ID_B1 SINE B4 -58 166 82 8 1186 183 80 0 0 chr11 78783573 78783598 -43060258 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 8 1186 291 179 54 0 chr11 78783604 78783660 -43060196 - PB1D10 SINE Alu 0 117 59 8 1186 501 184 0 65 chr11 78783611 78783704 -43060152 - ID_B1 SINE B4 -7 217 131 8 1186 752 207 0 21 chr11 78783778 78783921 -43059935 + B1_Mur4 SINE Alu 1 140 -10 8 1186 417 206 58 19 chr11 78783949 78784052 -43059804 + B1F SINE Alu 21 127 -22 8 1186 294 294 45 81 chr11 78784052 78784163 -43059693 + PB1D7 SINE Alu 1 107 -13 8 1186 502 291 0 71 chr11 78784167 78784278 -43059578 + PB1D10 SINE Alu 1 103 -14 8 1186 744 43 0 0 chr11 78784278 78784370 -43059486 + (GGAAA)n Simple_repeat Simple_repeat 3 94 0 8 1186 502 291 0 71 chr11 78784370 78784384 -43059472 + PB1D10 SINE Alu 104 117 0 8 1186 218 191 0 42 chr11 78784405 78784476 -43059380 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 8 1186 1188 160 49 15 chr11 78785176 78785379 -43058477 - B3 SINE B2 -6 210 1 8 1186 1114 220 14 18 chr11 78785421 78785643 -43058213 - ID_B1 SINE B4 -2 222 2 8 1186 378 0 0 0 chr11 78785851 78785893 -43057963 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1186 269 294 175 7 chr11 78786028 78786165 -43057691 + Lx8 LINE L1 7168 7327 -146 8 1186 586 211 151 45 chr11 78787049 78787350 -43056506 + MTD LTR MaLR 1 403 -16 8 1186 1232 280 79 65 chr11 78787350 78788030 -43055826 + Lx8 LINE L1 6563 7252 -221 8 1186 549 29 0 0 chr11 78788135 78788204 -43055652 + B1_Mus2 SINE Alu 1 69 -78 8 1186 349 225 42 0 chr11 78788301 78788372 -43055484 - ID SINE ID -150 74 1 8 1186 498 285 0 8 chr11 78788931 78789055 -43054801 - ID_B1 SINE B4 0 224 102 8 1186 367 277 0 50 chr11 78789070 78789147 -43054709 - ID_B1 SINE B4 -1 223 147 8 1186 1331 105 10 10 chr11 78789147 78789340 -43054516 - B2_Mm1t SINE B2 0 193 1 8 1186 367 277 0 50 chr11 78789340 78789361 -43054495 - ID_B1 SINE B4 -78 146 130 8 1186 517 308 59 50 chr11 78789358 78789577 -43054279 - ID_B1 SINE B4 -2 222 2 8 1186 807 214 13 7 chr11 78789650 78789805 -43054051 + B3A SINE B2 2 157 -41 8 1186 270 0 0 0 chr11 78789811 78789841 -43054015 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1186 441 258 93 43 chr11 78790913 78791075 -43052781 + MIRb SINE MIR 2 171 -97 8 1186 911 73 137 0 chr11 78791534 78791658 -43052198 + B1_Mus1 SINE Alu 2 142 -6 8 1186 201 74 0 0 chr11 78791662 78791689 -43052167 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1186 23 33 0 0 chr11 78791692 78791722 -43052134 + AT_rich Low_complexity Low_complexity 1 30 0 8 1186 229 290 29 14 chr11 78792408 78792419 -43051437 - YREP_Mm Unknown Unknown -1486 326 256 8 1186 230 305 17 0 chr11 78792419 78792478 -43051378 + PB1D7 SINE Alu 2 61 -59 8 1186 31 0 0 0 chr11 78792485 78792516 -43051340 + AT_rich Low_complexity Low_complexity 1 31 0 8 1186 1294 27 0 0 chr11 78792526 78792673 -43051183 - B1_Mus2 SINE Alu 0 147 1 8 1186 3008 50 0 0 chr11 78792680 78793039 -43050817 - L1_Mus1 LINE L1 0 6567 6209 8 1186 1268 113 17 11 chr11 78793570 78793749 -43050107 - B2_Mm2 SINE B2 -14 181 2 8 1186 27 0 0 0 chr11 78793749 78793776 -43050080 + AT_rich Low_complexity Low_complexity 1 27 0 8 1186 238 238 52 55 chr11 78794227 78794300 -43049556 - ID2 SINE ID -33 119 33 8 1186 465 243 30 73 chr11 78794365 78794529 -43049327 + B3A SINE B2 42 198 0 8 1186 183 42 0 0 chr11 78794806 78794830 -43049026 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1186 293 244 250 8 chr11 78794858 78794978 -43048878 - B1F1 SINE Alu 0 149 1 8 1186 1606 53 0 0 chr11 78795013 78795203 -43048653 - B2_Mm1a SINE B2 -3 190 1 8 1186 288 0 0 0 chr11 78795361 78795393 -43048463 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 1186 236 259 17 17 chr11 78795394 78795453 -43048403 - B4 SINE B4 -204 88 30 8 1186 277 271 0 0 chr11 78795400 78795459 -43048397 - ID4_ SINE ID -2 81 23 8 1186 389 250 140 0 chr11 78795591 78795691 -43048165 - RSINE1 SINE B4 -36 129 16 8 1186 388 288 159 0 chr11 78795828 78795991 -43047865 + MLT1D LTR MaLR 50 238 -267 8 1186 486 309 8 23 chr11 78795995 78796124 -43047732 + RSINE1 SINE B4 6 132 -33 8 1186 205 27 0 75 chr11 78796124 78796164 -43047692 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 8 1186 375 303 26 36 chr11 78796385 78796531 -43047325 - MIR SINE MIR -89 187 48 8 1186 498 138 22 54 chr11 78796951 78797043 -43046813 - B1_Mm SINE Alu -36 111 23 8 1186 209 281 49 0 chr11 78797429 78797511 -43046345 + MIRc SINE MIR 71 156 -112 8 1186 353 322 109 23 chr11 78797718 78797893 -43045963 - MIR SINE MIR -29 233 44 8 1186 412 136 0 0 chr11 78799212 78799271 -43044585 - ID_B1 SINE B4 -23 201 143 8 1186 1057 109 12 18 chr11 78799267 78799435 -43044421 - B2_Mm1t SINE B2 0 193 27 8 1186 287 65 22 0 chr11 78799444 78799490 -43044366 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1186 285 139 0 0 chr11 78799491 78799534 -43044322 - B2_Mm2 SINE B2 -152 43 1 8 1186 680 226 48 7 chr11 78799535 78799682 -43044174 - ID_B1 SINE B4 -69 155 3 8 1186 252 300 14 0 chr11 78800110 78800180 -43043676 + MLT1A1 LTR MaLR 300 370 -38 8 1186 275 213 0 13 chr11 78801186 78801262 -43042594 + CT-rich Low_complexity Low_complexity 1 75 0 8 1186 599 227 15 15 chr11 78801269 78801403 -43042453 - B1_Mur3 SINE Alu -14 135 2 8 1186 564 260 141 15 chr11 78801462 78801661 -43042195 - ID_B1 SINE B4 0 224 1 8 1186 318 227 79 35 chr11 78801661 78801775 -43042081 - L1M5 LINE L1 -485 5679 5557 8 1186 999 118 0 0 chr11 78801856 78802009 -43041847 + (TTTTC)n Simple_repeat Simple_repeat 2 154 0 8 1186 312 210 16 0 chr11 78802270 78802332 -43041524 + B1F SINE Alu 62 124 -25 8 1186 883 64 200 0 chr11 78803095 78803220 -43040636 + B1_Mur4 SINE Alu 1 150 0 8 1186 201 147 0 0 chr11 78803220 78803254 -43040602 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1186 275 304 29 0 chr11 78803265 78803367 -43040489 + RMER16-int LTR ERVK 181 285 -6959 8 1186 2278 154 124 27 chr11 78804120 78804635 -43039221 + RMER16-int LTR ERVK 255 819 -4587 8 1186 696 142 25 8 chr11 78804640 78804761 -43039095 + RMER16-int LTR ERVK 938 1060 -5077 8 1186 6256 145 75 59 chr11 78804774 78805432 -43038424 + ETnERV2-int LTR ERVK 2555 3223 -4183 8 1186 181 246 140 0 chr11 78805432 78805489 -43038367 - MER5A DNA MER1_type -116 73 9 8 1186 6256 145 75 59 chr11 78805489 78806332 -43037524 + ETnERV2-int LTR ERVK 3224 4082 -3324 8 1186 6234 178 65 50 chr11 78806329 78807844 -43036012 + ETnERV3-int LTR ERVK 3849 5386 -422 8 1186 3190 73 28 22 chr11 78807845 78808300 -43035556 + RLTR13D5 LTR ERVK 281 722 -256 8 1186 273 259 0 0 chr11 78808387 78808468 -43035388 + RNERVK23-int LTR ERVK 6808 6888 -1329 8 1186 207 0 0 0 chr11 78808687 78808710 -43035146 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1186 1245 41 0 26 chr11 78808710 78808853 -43035003 - B1_Mus2 SINE Alu -6 141 1 8 1186 451 325 13 0 chr11 78809000 78809151 -43034705 + ETnERV3-int LTR ERVK 6494 6646 -760 8 1186 671 275 21 0 chr11 78809890 78810032 -43033824 + ID_B1 SINE B4 79 223 -1 8 1186 312 272 0 24 chr11 78810028 78810111 -43033745 + ID_B1 SINE B4 143 223 -1 8 1186 210 37 0 0 chr11 78810311 78810338 -43033518 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1186 278 159 0 22 chr11 78810340 78810385 -43033471 - B1F1 SINE Alu -12 137 94 8 1186 2553 136 179 30 chr11 78810453 78810984 -43032872 - RLTR13C1 LTR ERVK 0 983 374 8 1186 1113 75 0 7 chr11 78810985 78811132 -43032724 - RLTR13C1 LTR ERVK -968 146 1 8 1186 493 215 64 32 chr11 78811133 78811258 -43032598 - B1_Mur4 SINE Alu 0 150 22 8 1186 761 224 29 48 chr11 78811255 78811410 -43032446 + B3 SINE B2 15 170 -46 8 1186 4821 61 2 2 chr11 78811410 78811997 -43031859 + LTRIS_Mus LTR ERV1 1 587 0 8 1186 761 224 29 48 chr11 78811997 78812047 -43031809 + B3 SINE B2 171 216 0 8 1186 245 291 53 114 chr11 78812478 78812610 -43031246 + RMER10A LTR ERVL 23 146 -296 8 1186 303 283 86 11 chr11 78812890 78812983 -43030873 - RSINE1 SINE B4 -64 101 2 8 1186 348 254 147 54 chr11 78813318 78813447 -43030409 - RSINE1 SINE B4 0 165 25 8 1186 1166 52 0 0 chr11 78813503 78813638 -43030218 + B1_Mus2 SINE Alu 4 138 -9 8 1186 1179 76 122 0 chr11 78813696 78813868 -43029988 + B2_Mm1t SINE B2 1 193 0 8 1186 1234 61 0 0 chr11 78813868 78814014 -43029842 + B1_Mus2 SINE Alu 1 147 0 8 1186 2056 176 82 43 chr11 78814047 78814113 -43029743 + RLTR11A LTR ERVK 49 124 -404 8 1186 411 21 0 0 chr11 78814113 78814161 -43029695 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 8 1186 1367 68 11 0 chr11 78814161 78814337 -43029519 - B2_Mm1t SINE B2 -15 178 1 8 1186 2056 176 82 43 chr11 78814337 78814731 -43029125 + RLTR11A LTR ERVK 125 527 -1 8 1186 1444 74 0 5 chr11 78814946 78815136 -43028720 - B2_Mm2 SINE B2 -6 189 1 8 1186 1008 204 70 0 chr11 78815140 78815341 -43028515 - B3 SINE B2 0 216 2 9 1186 215 247 35 47 chr11 78815343 78815428 -43028428 + (CATATA)n Simple_repeat Simple_repeat 2 85 0 9 1186 374 249 13 4 chr11 78815699 78815790 -43028066 - PB1D7 SINE Alu -2 125 27 9 1186 1406 82 16 0 chr11 78818101 78818284 -43025572 - B2_Mm2 SINE B2 -8 187 2 9 1186 450 283 19 17 chr11 78818425 78818566 -43025290 - B1F1 SINE Alu -1 148 1 9 1186 379 309 132 8 chr11 78818583 78818841 -43025015 + B4 SINE B4 3 292 0 9 1186 478 175 5 58 chr11 78818861 78819049 -43024807 + (CATA)n Simple_repeat Simple_repeat 1 178 0 9 1186 684 239 187 11 chr11 78819512 78819694 -43024162 - RMER13A LTR ERVK -312 548 335 9 1186 444 221 173 45 chr11 78819661 78819817 -43024039 + RMER13A LTR ERVK 685 860 0 9 1186 234 254 0 0 chr11 78819818 78819885 -43023971 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 9 1186 353 231 9 61 chr11 78819891 78820006 -43023850 + HAL1-3A_ME LINE L1 1975 2083 -775 9 1186 391 303 54 67 chr11 78820208 78820431 -43023425 + RMER2 LTR ERV1 344 563 -4 9 1186 768 11 0 0 chr11 78820630 78820719 -43023137 + (TG)n Simple_repeat Simple_repeat 2 90 0 9 1186 1592 36 0 20 chr11 78820866 78821062 -43022794 - B2_Mm1a SINE B2 -1 192 1 9 1186 459 266 15 88 chr11 78821128 78821264 -43022592 + ID_B1 SINE B4 90 215 -9 9 1186 237 245 0 0 chr11 78821270 78821323 -43022533 + PB1D9 SINE Alu 5 57 -63 9 1186 437 144 65 32 chr11 78821820 78821913 -43021943 - PB1D7 SINE Alu -16 104 9 9 1186 666 234 49 37 chr11 78821830 78821994 -43021862 - ID_B1 SINE B4 -55 169 4 9 1186 2674 59 12 0 chr11 78822644 78822967 -43020889 + ORR1A2 LTR MaLR 1 327 0 9 1186 385 331 8 39 chr11 78823056 78823185 -43020671 + B4 SINE B4 168 292 0 9 1186 291 279 77 0 chr11 78823282 78823386 -43020470 - L1M3 LINE L1 -2306 3834 3723 9 1186 422 319 0 33 chr11 78823427 78823547 -43020309 - RSINE1 SINE B4 -35 130 15 9 1186 732 276 126 37 chr11 78823567 78824108 -43019748 - L1M3 LINE L1 -2406 3737 3139 9 1186 191 105 0 50 chr11 78824180 78824220 -43019636 + (TTG)n Simple_repeat Simple_repeat 3 40 0 9 1186 277 312 69 50 chr11 78824394 78824495 -43019361 + RSINE1 SINE B4 46 148 -17 9 1186 1305 85 22 6 chr11 78824549 78824727 -43019129 + B2_Mm2 SINE B2 2 182 -13 9 1186 311 143 391 11 chr11 78824766 78824858 -43018998 + B2_Mm2 SINE B2 64 190 -5 9 1186 1094 115 0 0 chr11 78824880 78825028 -43018828 + B1_Mus1 SINE Alu 1 148 0 9 1186 308 346 40 0 chr11 78825069 78825170 -43018686 - PB1D10 SINE Alu -11 106 2 9 1186 726 184 202 22 chr11 78825213 78825396 -43018460 - B3 SINE B2 0 216 1 9 1186 588 272 55 65 chr11 78825400 78825691 -43018165 - B4A SINE B4 -4 288 1 9 1186 650 247 84 28 chr11 78826169 78826267 -43017589 - B3A SINE B2 -7 191 86 9 1186 1950 101 94 3 chr11 78826267 78826565 -43017291 + ORR1A4 LTR MaLR 1 325 -4 9 1186 650 247 84 28 chr11 78826565 78826645 -43017211 - B3A SINE B2 -113 85 4 9 1186 204 216 0 0 chr11 78826669 78826720 -43017136 + CT-rich Low_complexity Low_complexity 4 54 0 9 1186 432 185 0 58 chr11 78826723 78826809 -43017047 - ID_B1 SINE B4 -17 207 127 9 1186 351 0 0 0 chr11 78829512 78829551 -43014305 + (CACG)n Simple_repeat Simple_repeat 2 40 0 9 1186 180 0 0 0 chr11 78830310 78830330 -43013526 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1186 272 257 40 0 chr11 78831128 78831202 -43012654 - ID4 SINE ID -4 79 3 9 1186 690 92 160 48 chr11 78831227 78831352 -43012504 - B1_Mur2 SINE Alu -7 142 4 9 1186 494 245 0 0 chr11 78831386 78831480 -43012376 - PB1D10 SINE Alu -21 96 3 9 1186 482 262 119 24 chr11 78835117 78835285 -43008571 - MIRb SINE MIR -79 189 6 9 1186 743 228 7 0 chr11 78835467 78835612 -43008244 + B3A SINE B2 1 146 -52 9 1186 710 168 7 0 chr11 78835703 78835840 -43008016 + GA-rich Low_complexity Low_complexity 3 140 0 9 1186 612 270 55 6 chr11 78836657 78836821 -43007035 + ID_B1 SINE B4 53 224 0 9 1186 813 195 161 16 chr11 78837517 78837710 -43006146 - ID_B1 SINE B4 -1 223 3 9 1186 289 247 21 82 chr11 78837778 78837875 -43005981 - PB1D10 SINE Alu 0 117 27 9 1186 1321 158 30 0 chr11 78837933 78838136 -43005720 - B3 SINE B2 -6 210 2 9 1186 376 254 66 25 chr11 78838428 78838549 -43005307 - MIRc SINE MIR -125 143 18 9 1186 221 0 35 0 chr11 78839492 78839521 -43004335 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 9 1186 431 311 62 61 chr11 78839581 78839664 -43004192 + ID_B1 SINE B4 9 189 -35 9 1186 637 213 16 0 chr11 78839664 78839786 -43004070 + B1_Mm SINE Alu 1 124 -23 9 1186 26 64 0 0 chr11 78840210 78840257 -43003599 + AT_rich Low_complexity Low_complexity 1 47 0 9 1186 644 269 45 6 chr11 78840258 78840415 -43003441 - RSINE1 SINE B4 0 165 3 9 1186 390 159 0 0 chr11 78840569 78840638 -43003218 + (TTA)n Simple_repeat Simple_repeat 3 71 0 9 1186 500 243 19 0 chr11 78840646 78840749 -43003107 - PB1D10 SINE Alu -12 105 1 9 1186 767 189 0 82 chr11 78841502 78841686 -43002170 - ID_B1 SINE B4 0 224 56 9 1186 225 83 0 0 chr11 78842064 78842100 -43001756 + (G)n Simple_repeat Simple_repeat 1 36 0 9 1186 333 295 76 0 chr11 78845127 78845232 -42998624 - PB1 SINE Alu -7 120 8 9 1186 186 278 108 42 chr11 78845232 78845352 -42998504 + MIRc SINE MIR 68 195 -73 9 1186 183 333 0 0 chr11 78846559 78846625 -42997231 + MIRm SINE MIR 99 164 -112 9 1186 689 225 160 0 chr11 78847499 78847686 -42996170 + ID_B1 SINE B4 2 218 -6 9 1186 437 333 86 30 chr11 78848155 78848353 -42995503 - B4A SINE B4 -2 290 82 9 1186 682 283 18 77 chr11 78848339 78848371 -42995485 - B4A SINE B4 -36 256 202 9 1186 696 191 0 8 chr11 78848371 78848498 -42995358 - B1_Mur1 SINE Alu -5 144 19 9 1186 682 283 18 77 chr11 78848498 78848611 -42995245 - B4A SINE B4 -36 201 1 9 1186 475 358 34 10 chr11 78848879 78849088 -42994768 + MIRb SINE MIR 19 232 -36 9 1186 971 181 197 6 chr11 78850429 78850607 -42993249 - B3 SINE B2 -3 213 2 9 1186 246 196 20 0 chr11 78853429 78853480 -42990376 + PB1D9 SINE Alu 3 54 -66 9 1186 395 0 0 163 chr11 78853483 78853698 -42990158 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 9 1186 322 160 0 0 chr11 78853681 78853731 -42990125 + (CAGAGA)n Simple_repeat Simple_repeat 1 50 0 9 1186 586 115 19 28 chr11 78853731 78853838 -42990018 + B1_Mur1 SINE Alu 42 147 -2 9 1186 1129 109 109 0 chr11 78853841 78854015 -42989841 + B2_Mm2 SINE B2 1 193 -2 9 1186 431 230 79 0 chr11 78857775 78857901 -42985955 - MER2 DNA MER2_type -171 174 39 9 1186 333 197 0 15 chr11 78858107 78858174 -42985682 + MLT1I LTR MaLR 346 411 0 9 1186 513 238 8 62 chr11 78859103 78859233 -42984623 + ID_B1 SINE B4 95 217 -7 9 1186 376 258 11 0 chr11 78859327 78859420 -42984436 + PB1D10 SINE Alu 3 96 -21 9 1186 191 273 130 0 chr11 78859493 78859570 -42984286 - MIR SINE MIR -68 194 108 9 1186 681 181 70 28 chr11 78859877 78860019 -42983837 + B1_Mur1 SINE Alu 1 148 -1 9 1186 460 215 49 16 chr11 78861424 78861547 -42982309 + B1F1 SINE Alu 21 147 -2 9 1186 439 272 184 27 chr11 78861552 78861737 -42982119 + ID_B1 SINE B4 3 216 -8 9 1186 221 263 79 0 chr11 78861904 78861980 -42981876 + ID4_ SINE ID 1 82 -1 9 1186 434 207 12 32 chr11 78861923 78862056 -42981800 + RSINE1 SINE B4 26 155 -10 9 1186 357 93 0 0 chr11 78862228 78862282 -42981574 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1186 728 112 35 0 chr11 78862339 78862455 -42981401 + B2_Mm2 SINE B2 1 120 -75 9 1186 390 195 13 25 chr11 78862421 78862500 -42981356 - PB1D9 SINE Alu -41 79 2 9 1186 1248 199 24 0 chr11 78862524 78862735 -42981121 - B3 SINE B2 0 216 1 9 1186 245 274 171 34 chr11 78862842 78862959 -42980897 + MLT1E2 LTR MaLR 247 379 -248 9 1186 236 360 69 57 chr11 78863040 78863302 -42980554 + LTR29 LTR ERV1 84 348 -274 9 1186 1130 88 0 13 chr11 78863507 78863657 -42980199 + B1_Mus1 SINE Alu 1 148 0 9 1186 252 194 0 0 chr11 78863659 78863708 -42980148 + A-rich Low_complexity Low_complexity 1 49 0 9 1186 432 0 0 0 chr11 78863708 78863756 -42980100 + (GGGAA)n Simple_repeat Simple_repeat 3 50 0 9 1186 252 194 0 0 chr11 78863756 78863768 -42980088 + A-rich Low_complexity Low_complexity 50 61 0 9 1186 430 288 16 25 chr11 78863768 78863889 -42979967 + MLT1E2 LTR MaLR 392 511 -116 9 1186 489 239 40 47 chr11 78864344 78864493 -42979363 - B1F1 SINE Alu -1 148 1 9 1186 289 306 30 97 chr11 78865007 78865141 -42978715 + PB1D10 SINE Alu 12 137 -11 9 1186 2784 55 0 0 chr11 78865358 78865685 -42978171 + ORR1A2 LTR MaLR 1 327 0 9 1186 248 336 59 63 chr11 78865972 78866242 -42977614 - RMER17C LTR ERVK -34 376 108 9 1186 322 242 89 85 chr11 78866257 78866505 -42977351 - RMER17C LTR ERVK -161 249 1 9 1186 294 277 143 0 chr11 78867292 78867404 -42976452 + ID_B1 SINE B4 81 208 -16 9 1186 240 184 0 0 chr11 78867531 78867580 -42976276 + CT-rich Low_complexity Low_complexity 2 50 0 9 1186 287 61 41 0 chr11 78867578 78867627 -42976229 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 1186 1254 54 0 0 chr11 78867629 78867776 -42976080 - B1_Mus1 SINE Alu 0 148 2 9 1186 415 309 114 0 chr11 78868567 78868716 -42975140 - L4 LINE RTE -1229 800 635 9 1186 429 297 83 24 chr11 78869294 78869463 -42974393 - MER58B DNA MER1_type -84 257 79 1 1186 201 143 0 0 chr11 78869467 78869502 -42974354 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1186 228 247 34 0 chr11 78869905 78869975 -42973881 + PB1D10 SINE Alu 48 120 0 1 1186 791 283 48 0 chr11 78870116 78870303 -42973553 + B3A SINE B2 2 197 -1 1 1186 221 315 108 14 chr11 78870838 78870912 -42972944 - ID4_ SINE ID -2 81 1 1 1186 24 32 0 0 chr11 78873946 78873977 -42969879 + AT_rich Low_complexity Low_complexity 1 31 0 1 1186 995 276 24 52 chr11 78873988 78874191 -42969665 + B4A SINE B4 7 204 -88 1 1186 284 0 28 0 chr11 78874191 78874227 -42969629 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1186 1143 72 0 0 chr11 78874227 78874365 -42969491 - B1_Mus2 SINE Alu -9 138 1 1 1186 995 276 24 52 chr11 78874365 78874450 -42969406 + B4A SINE B4 205 287 -5 1 1186 219 345 0 0 chr11 78874593 78874677 -42969179 + MIR SINE MIR 32 115 -147 1 1186 465 180 48 39 chr11 78874865 78874969 -42968887 + B2_Mm2 SINE B2 77 181 -14 1 1186 1314 76 58 0 chr11 78875112 78875283 -42968573 - B2_Mm2 SINE B2 -14 181 1 1 1186 499 293 40 23 chr11 78875344 78875518 -42968338 + ID_B1 SINE B4 84 273 -19 1 1186 307 125 62 0 chr11 78876619 78876683 -42967173 - MIRm SINE MIR -134 142 75 1 1186 786 268 73 66 chr11 78876788 78877076 -42966780 + B4A SINE B4 3 292 0 1 1186 283 345 154 6 chr11 78878143 78878318 -42965538 + MIRc SINE MIR 33 233 -35 1 1186 190 315 22 22 chr11 78879533 78879624 -42964232 + L2c LINE L2 2996 3086 -301 1 1186 1109 150 84 33 chr11 78879911 78880125 -42963731 - URR1A DNA MER1_type -1 225 1 1 1186 1169 75 0 20 chr11 78880307 78880457 -42963399 + B1_Mus1 SINE Alu 2 148 0 1 1186 3874 168 219 17 chr11 78880511 78881281 -42962575 + RMER1A Other Other 1 908 -122 1 1186 667 52 21 0 chr11 78881281 78881377 -42962479 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1186 3874 183 200 20 chr11 78881377 78881506 -42962350 + RMER1A Other Other 909 1019 -11 1 1186 2891 121 12 2 chr11 78881567 78881980 -42961876 + MTC LTR MaLR 5 421 0 1 1186 505 252 50 29 chr11 78882074 78882213 -42961643 - B1F SINE Alu -7 142 1 1 1186 1498 63 16 0 chr11 78882226 78882415 -42961441 - B2_Mm1a SINE B2 -1 192 1 1 1186 204 125 0 0 chr11 78883042 78883074 -42960782 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 1 1186 208 286 0 0 chr11 78884094 78884150 -42959706 - MIR SINE MIR -75 133 78 1 1186 252 0 0 0 chr11 78886349 78886377 -42957479 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1186 569 219 8 24 chr11 78886406 78886532 -42957324 + B1F2 SINE Alu 18 141 -8 1 1186 276 296 86 23 chr11 78886555 78886683 -42957173 - Charlie5 DNA MER1_type -78 2546 2411 1 1186 180 277 63 90 chr11 78887176 78887287 -42956569 + MIRb SINE MIR 2 109 -159 1 1186 990 179 73 44 chr11 78887345 78887549 -42956307 - B3 SINE B2 -6 210 1 1 1186 318 80 0 0 chr11 78888437 78888487 -42955369 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1186 795 220 29 29 chr11 78890761 78890973 -42952883 + B3A SINE B2 2 208 -8 1 1186 592 228 18 0 chr11 78890973 78891087 -42952769 + PB1D9 SINE Alu 1 116 -4 1 1186 209 33 33 0 chr11 78891090 78891120 -42952736 + (CAAAC)n Simple_repeat Simple_repeat 4 34 0 1 1186 402 257 165 0 chr11 78891304 78891413 -42952443 + ID_B1 SINE B4 82 208 -16 1 1186 788 267 8 38 chr11 78891756 78891982 -42951874 - B4A SINE B4 -49 243 23 1 1186 854 189 0 7 chr11 78893298 78893447 -42950409 - B1_Mur3 SINE Alu -1 148 1 1 1186 379 341 103 11 chr11 78893447 78893621 -42950235 - B3A SINE B2 -7 191 1 1 1186 378 260 46 33 chr11 78893667 78893818 -42950038 - Tigger12c DNA MER2_type -517 217 65 1 1186 270 0 0 0 chr11 78894317 78894347 -42949509 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1186 279 0 0 0 chr11 78895729 78895760 -42948096 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1 1186 1984 114 45 0 chr11 78897614 78897922 -42945934 - ORR1A2 LTR MaLR 0 327 6 1 1186 333 0 0 0 chr11 78898128 78898165 -42945691 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1186 183 184 0 73 chr11 78898758 78898799 -42945057 + MIRc SINE MIR 113 150 -118 1 1186 2044 151 2 86 chr11 78899432 78899860 -42943996 - MTD LTR MaLR -27 392 1 1 1186 974 231 153 38 chr11 78900788 78901049 -42942807 - B4A SINE B4 0 292 2 1 1186 472 241 0 89 chr11 78901059 78901182 -42942674 - PB1D10 SINE Alu -5 112 1 1 1186 458 202 33 66 chr11 78902182 78902304 -42941552 + PB1D7 SINE Alu 2 119 -1 1 1186 1192 174 14 14 chr11 78902306 78902521 -42941335 + B3 SINE B2 1 215 -1 1 1186 23 33 0 0 chr11 78902521 78902551 -42941305 + AT_rich Low_complexity Low_complexity 1 30 0 1 1186 240 167 0 0 chr11 78902568 78902616 -42941240 + GA-rich Low_complexity Low_complexity 2 49 0 1 1186 242 250 38 38 chr11 78903021 78903100 -42940756 + B4A SINE B4 6 84 -208 1 1186 306 283 137 7 chr11 78903129 78903268 -42940588 + B4A SINE B4 136 292 0 1 1186 201 209 0 0 chr11 78903275 78903342 -42940514 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1186 180 0 0 0 chr11 78903343 78903363 -42940493 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1186 315 0 0 0 chr11 78903593 78903628 -42940228 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1186 1271 47 17 23 chr11 78903880 78904054 -42939802 + B2_Mm2 SINE B2 1 173 -22 1 1186 936 65 0 0 chr11 78904054 78904178 -42939678 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 1 1186 480 283 0 62 chr11 78904719 78904847 -42939009 - RSINE1 SINE B4 -41 124 5 1 1187 746 279 12 0 chr11 78905394 78905555 -42938301 + RSINE1 SINE B4 1 163 -2 1 1187 210 244 0 0 chr11 78905584 78905666 -42938190 + (CAT)n Simple_repeat Simple_repeat 1 82 0 1 1187 385 326 129 6 chr11 78906816 78907133 -42936723 + MLT1J LTR MaLR 112 467 -45 1 1187 632 232 6 49 chr11 78907360 78907523 -42936333 - RSINE1 SINE B4 -8 157 2 1 1187 203 133 0 0 chr11 78908123 78908153 -42935703 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1 1187 368 260 104 0 chr11 78908798 78908894 -42934962 + PB1 SINE Alu 20 125 -2 1 1187 226 200 20 20 chr11 78908896 78908947 -42934909 + ID4 SINE ID 1 51 -32 1 1187 228 35 0 0 chr11 78909372 78909401 -42934455 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 1 1187 422 209 80 18 chr11 78909581 78909693 -42934163 + PB1D7 SINE Alu 2 120 0 1 1187 341 22 22 0 chr11 78910163 78910209 -42933647 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1187 445 248 81 25 chr11 78910209 78910370 -42933486 + RMER15 LTR ERVL 406 575 0 1 1187 183 220 0 0 chr11 78911065 78911115 -42932741 + (TGGG)n Simple_repeat Simple_repeat 3 52 0 1 1187 526 233 8 17 chr11 78911508 78911626 -42932230 + PB1D10 SINE Alu 1 117 0 1 1187 328 234 0 49 chr11 78911661 78911742 -42932114 + ID4_ SINE ID 6 82 -1 1 1187 378 0 0 0 chr11 78911848 78911890 -42931966 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1187 22 0 0 0 chr11 78911904 78911926 -42931930 + AT_rich Low_complexity Low_complexity 1 22 0 1 1187 252 122 0 0 chr11 78913359 78913400 -42930456 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1187 287 241 82 41 chr11 78913729 78913876 -42929980 + L1ME3A LINE L1 6021 6173 0 1 1187 345 47 0 0 chr11 78914852 78914895 -42928961 + (TGG)n Simple_repeat Simple_repeat 1 43 0 1 1187 433 297 8 8 chr11 78915119 78915238 -42928618 - RSINE1 SINE B4 -43 122 4 1 1187 316 258 76 23 chr11 78915759 78915890 -42927966 - MIRc SINE MIR -49 219 82 1 1187 599 261 93 25 chr11 78916448 78916652 -42927204 - ID_B1 SINE B4 -1 223 6 1 1187 249 108 0 0 chr11 78917579 78917616 -42926240 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1187 940 244 30 5 chr11 78917791 78917993 -42925863 - B3 SINE B2 -9 207 1 1 1187 277 298 139 90 chr11 78918063 78918207 -42925649 - RSINE1 SINE B4 -2 163 13 1 1187 411 21 0 0 chr11 78918484 78918532 -42925324 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1187 623 197 50 14 chr11 78918581 78918720 -42925136 - MIR SINE MIR -118 144 1 1 1187 231 218 0 38 chr11 78919222 78919291 -42924565 - MIRc SINE MIR -98 164 102 1 1187 3297 58 2 2 chr11 78919830 78920226 -42923630 - MTA_Mm LTR MaLR 0 396 1 1 1187 339 322 244 43 chr11 78920438 78920736 -42923120 - MLT1I LTR MaLR -2 409 52 1 1187 295 326 77 5 chr11 78920839 78920982 -42922874 - ID_B1 SINE B4 0 224 77 1 1187 283 316 40 22 chr11 78921743 78921910 -42921946 + MIRb SINE MIR 35 203 -73 1 1187 1447 226 113 5 chr11 78922026 78922396 -42921460 + MTD LTR MaLR 10 419 0 1 1187 227 317 61 66 chr11 78923533 78923746 -42920110 - RMER12 LTR ERVK -220 1102 891 1 1187 378 219 85 34 chr11 78924085 78924203 -42919653 - RSINE1 SINE B4 -39 126 3 1 1187 289 274 55 0 chr11 78924313 78924386 -42919470 + PB1D7 SINE Alu 18 94 -26 1 1187 266 208 0 0 chr11 78924385 78924438 -42919418 + ID4 SINE ID 8 60 -23 1 1187 666 0 0 0 chr11 78924439 78924513 -42919343 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 1 1187 271 299 11 22 chr11 78924513 78924543 -42919313 + polypurine Low_complexity Low_complexity 3 32 0 1 1187 1230 58 0 24 chr11 78924543 78924724 -42919132 + (GGGAA)n Simple_repeat Simple_repeat 1 179 -152 1 1187 1230 58 0 24 chr11 78924731 78924883 -42918973 + (GGGAA)n Simple_repeat Simple_repeat 180 331 0 1 1187 271 299 11 22 chr11 78924883 78924933 -42918923 + polypurine Low_complexity Low_complexity 40 89 0 1 1187 533 123 10 34 chr11 78924941 78925048 -42918808 + B1_Mus2 SINE Alu 41 149 0 1 1187 904 291 18 25 chr11 78925053 78925319 -42918537 + B4 SINE B4 1 266 -26 1 1187 401 0 20 0 chr11 78925319 78925368 -42918488 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1187 904 291 18 25 chr11 78925368 78925379 -42918477 + B4 SINE B4 267 276 -16 1 1187 846 272 22 120 chr11 78926852 78927169 -42916687 - B4 SINE B4 0 292 7 1 1187 434 196 365 0 chr11 78927273 78927380 -42916476 + RSINE1 SINE B4 1 146 -19 1 1187 420 20 0 0 chr11 78927389 78927438 -42916418 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1187 414 0 0 0 chr11 78927438 78927483 -42916373 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1187 540 0 0 0 chr11 78927645 78927705 -42916151 + (AGCTG)n Simple_repeat Simple_repeat 4 63 0 1 1187 840 152 180 33 chr11 78928649 78928832 -42915024 + B3 SINE B2 3 212 -4 1 1187 609 141 207 0 chr11 78928850 78928971 -42914885 + B1_Mur2 SINE Alu 3 148 -1 1 1187 216 295 74 28 chr11 78930901 78931009 -42912847 + B4 SINE B4 15 127 -165 1 1187 239 341 11 22 chr11 78931176 78931266 -42912590 + B1F SINE Alu 3 91 -58 1 1187 621 200 20 33 chr11 78931277 78931427 -42912429 + B1F2 SINE Alu 1 148 -1 1 1187 779 269 16 0 chr11 78931432 78931618 -42912238 + ID_B1 SINE B4 3 191 -33 1 1187 522 0 0 0 chr11 78931729 78931787 -42912069 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1187 507 311 0 22 chr11 78931790 78931925 -42911931 - RSINE1 SINE B4 -31 134 3 1 1187 378 147 26 13 chr11 78932858 78932934 -42910922 + L1MC LINE L1 5697 5773 -2109 1 1187 247 270 0 13 chr11 78932965 78933052 -42910804 + B1_Mur1 SINE Alu 42 139 -10 1 1187 804 151 8 0 chr11 78933124 78933250 -42910606 + B1_Mur1 SINE Alu 5 131 -18 1 1187 192 152 0 0 chr11 78933604 78933637 -42910219 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1 1187 294 29 0 0 chr11 78933637 78933672 -42910184 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1187 489 294 52 0 chr11 78933835 78933971 -42909885 + B1F2 SINE Alu 2 144 -5 1 1187 533 193 16 58 chr11 78933993 78934114 -42909742 + PB1D9 SINE Alu 5 120 0 1 1187 328 316 146 26 chr11 78934999 78935191 -42908665 - MIRb SINE MIR -38 230 16 1 1187 555 303 90 15 chr11 78936826 78937094 -42906762 + B4A SINE B4 1 288 -4 1 1187 325 278 63 27 chr11 78938064 78938175 -42905681 + PB1D10 SINE Alu 3 117 0 1 1187 23 0 0 0 chr11 78938221 78938244 -42905612 + GC_rich Low_complexity Low_complexity 1 23 0 1 1187 915 54 0 290 chr11 78938309 78938516 -42905340 + B1_Mm SINE Alu 1 147 0 1 1187 195 42 0 0 chr11 78938516 78938540 -42905316 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1187 254 50 0 24 chr11 78938602 78938643 -42905213 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1187 1095 115 0 0 chr11 78938652 78938800 -42905056 - B1_Mus1 SINE Alu 0 148 1 1 1187 309 330 35 9 chr11 78939137 78939250 -42904606 + PB1D10 SINE Alu 2 117 0 1 1187 590 262 14 0 chr11 78939400 78939541 -42904315 - RSINE1 SINE B4 -15 150 8 1 1187 542 253 189 6 chr11 78939593 78939768 -42904088 + B3 SINE B2 1 207 -9 1 1187 1032 202 26 0 chr11 78941116 78941309 -42902547 - B3 SINE B2 -13 203 6 1 1187 337 233 0 53 chr11 78941964 78942059 -42901797 + ID_B1 SINE B4 133 222 -2 1 1187 630 211 0 34 chr11 78942103 78942221 -42901635 + PB1D9 SINE Alu 2 115 -5 1 1187 261 360 94 25 chr11 78942385 78942587 -42901269 + L2a LINE L2 3159 3425 -1 1 1187 693 205 56 0 chr11 78942600 78942761 -42901095 + ID_B1 SINE B4 34 203 -21 1 1187 229 258 99 22 chr11 78942884 78942975 -42900881 - MIRc SINE MIR -111 157 60 1 1187 609 225 139 27 chr11 78944679 78944866 -42898990 + ID_B1 SINE B4 1 208 -16 1 1187 387 0 0 0 chr11 78944870 78944913 -42898943 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1 1187 466 232 26 18 chr11 78945005 78945119 -42898737 + PB1D10 SINE Alu 1 115 -2 1 1187 249 320 0 0 chr11 78945122 78945172 -42898684 + ID4_ SINE ID 5 54 -29 1 1187 1325 66 4 0 chr11 78945199 78945460 -42898396 + (CACAG)n Simple_repeat Simple_repeat 1 261 0 1 1187 244 357 0 0 chr11 78946272 78946342 -42897514 + MIRm SINE MIR 202 271 -5 1 1187 354 275 12 0 chr11 78946438 78946518 -42897338 + ID_B1 SINE B4 81 161 -63 1 1187 336 316 21 63 chr11 78946607 78946749 -42897107 + L1M5 LINE L1 5620 5755 -369 1 1187 428 267 75 15 chr11 78946877 78947010 -42896846 + B1F SINE Alu 1 141 -8 1 1187 371 243 0 0 chr11 78947041 78947111 -42896745 + ID4_ SINE ID 11 80 -3 1 1187 230 296 99 16 chr11 78947201 78947345 -42896511 - MIR SINE MIR -97 179 24 1 1187 441 0 0 0 chr11 78948110 78948159 -42895697 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1187 320 311 0 54 chr11 78948232 78948344 -42895512 + PB1D7 SINE Alu 13 118 -2 1 1187 648 218 99 16 chr11 78948344 78948526 -42895330 + B3A SINE B2 2 198 0 1 1187 695 261 55 96 chr11 78948555 78948650 -42895206 + ID_B1 SINE B4 11 96 -196 1 1187 198 0 0 0 chr11 78948650 78948672 -42895184 + (CG)n Simple_repeat Simple_repeat 2 23 0 1 1187 462 18 0 0 chr11 78948672 78948726 -42895130 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1187 695 268 57 97 chr11 78948726 78948875 -42894981 + ID_B1 SINE B4 93 247 -45 1 1187 283 89 36 0 chr11 78948959 78949015 -42894841 + (CCA)n Simple_repeat Simple_repeat 2 59 0 1 1187 745 197 121 22 chr11 78950108 78950290 -42893566 + B3 SINE B2 1 200 -16 1 1187 503 239 75 69 chr11 78950300 78950488 -42893368 + ORR1C2 LTR MaLR 48 223 -151 1 1187 270 304 0 94 chr11 78950465 78950592 -42893264 + B1_Mur2 SINE Alu 35 149 0 1 1187 324 0 0 0 chr11 78951089 78951125 -42892731 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1187 329 195 0 5 chr11 78951142 78951207 -42892649 - B2_Mm2 SINE B2 -107 109 47 1 1187 1204 101 6 6 chr11 78951277 78951447 -42892409 - B2_Mm1t SINE B2 -22 171 2 1 1187 427 107 0 26 chr11 78951822 78951899 -42891957 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 1187 279 214 24 107 chr11 78952180 78952297 -42891559 - B1F SINE Alu -15 134 20 1 1187 600 273 29 0 chr11 78952726 78952865 -42890991 + RSINE1 SINE B4 23 165 0 1 1187 366 23 0 0 chr11 78952893 78952936 -42890920 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 1187 1125 204 10 10 chr11 78952986 78953194 -42890662 + B3 SINE B2 3 210 -6 1 1187 207 0 0 0 chr11 78953592 78953615 -42890241 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1187 877 119 35 14 chr11 78953626 78953771 -42890085 + B1_Mur1 SINE Alu 2 149 0 1 1187 270 0 0 0 chr11 78954632 78954662 -42889194 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1187 353 182 15 15 chr11 78954668 78954735 -42889121 + RSINE1 SINE B4 2 68 -97 1 1187 590 237 51 0 chr11 78956682 78956800 -42887056 + B1F2 SINE Alu 16 139 -10 1 1187 387 0 0 0 chr11 78956823 78956866 -42886990 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1187 663 220 21 28 chr11 78956866 78957011 -42886845 + B3 SINE B2 4 147 -69 1 1187 234 316 110 49 chr11 78957503 78957666 -42886190 - MIR3 SINE MIR -2 206 34 1 1187 270 0 0 0 chr11 78958462 78958492 -42885364 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1187 353 22 22 0 chr11 78958492 78958537 -42885319 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1187 33 43 0 0 chr11 78959687 78959734 -42884122 + GC_rich Low_complexity Low_complexity 1 47 0 1 1187 325 288 0 24 chr11 78960378 78960460 -42883396 + ID2 SINE ID 4 83 0 1 1187 265 267 168 39 chr11 78960690 78960884 -42882972 + MIR SINE MIR 42 256 -6 1 1187 841 79 0 0 chr11 78961066 78961180 -42882676 + B1_Mur3 SINE Alu 34 147 -2 1 1187 354 219 81 81 chr11 78961182 78961306 -42882550 + MT2B LTR ERVL 155 278 -323 1 1187 762 173 8 30 chr11 78961199 78961330 -42882526 + B1_Mur1 SINE Alu 15 142 -7 1 1187 953 236 29 9 chr11 78961337 78961547 -42882309 + B3 SINE B2 2 215 -1 1 1187 1547 47 5 20 chr11 78961576 78961772 -42882084 + B2_Mm1t SINE B2 1 193 0 1 1187 421 267 57 0 chr11 78961789 78961894 -42881962 + PB1D7 SINE Alu 1 111 -9 1 1187 252 267 265 8 chr11 78961894 78961906 -42881950 + B4A SINE B4 86 232 -60 1 1187 398 315 22 16 chr11 78962035 78962219 -42881637 - MER5A DNA MER1_type -2 187 3 1 1187 576 254 157 5 chr11 78962239 78962449 -42881407 - B4A SINE B4 -49 243 2 1 1187 419 265 28 70 chr11 78962744 78962770 -42881086 - B1F SINE Alu -13 136 104 1 1187 225 0 0 0 chr11 78962780 78962805 -42881051 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1187 419 265 28 70 chr11 78962805 78962910 -42880946 - B1F SINE Alu -46 103 1 1 1187 289 342 97 39 chr11 78962910 78963117 -42880739 - L2a LINE L2 -298 3128 2910 1 1187 627 240 82 0 chr11 78963222 78963368 -42880488 + RSINE1 SINE B4 2 159 -6 1 1187 268 250 161 12 chr11 78963434 78963515 -42880341 + ID_B1 SINE B4 130 222 -2 1 1187 313 266 16 0 chr11 78963645 78963709 -42880147 - RSINE1 SINE B4 -93 72 8 1 1187 831 285 9 0 chr11 78963847 78964068 -42879788 + ID_B1 SINE B4 2 224 0 1 1187 273 250 78 13 chr11 78964193 78964270 -42879586 - B4 SINE B4 -209 83 2 1 1187 363 23 0 0 chr11 78964288 78964332 -42879524 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1187 265 154 0 0 chr11 78964541 78964587 -42879269 + ID4 SINE ID 21 66 -17 1 1187 301 271 153 16 chr11 78964642 78964766 -42879090 - B1F SINE Alu -6 143 3 1 1187 488 16 16 0 chr11 78965206 78965267 -42878589 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1187 270 274 113 0 chr11 78965293 78965355 -42878501 - RSINE1 SINE B4 -95 70 2 1 1187 356 272 65 0 chr11 78965377 78965469 -42878387 - PB1D10 SINE Alu -13 104 7 1 1187 251 277 15 0 chr11 78965418 78965483 -42878373 - ID_B1 SINE B4 -86 138 73 1 1187 204 292 97 0 chr11 78965664 78965736 -42878120 + MIRc SINE MIR 82 160 -48 1 1187 284 289 221 50 chr11 78965736 78965827 -42878029 + B4A SINE B4 2 175 -117 1 1187 438 253 21 0 chr11 78965827 78965922 -42877934 + PB1D7 SINE Alu 24 120 0 1 1187 284 289 221 50 chr11 78965922 78965976 -42877880 + B4A SINE B4 176 282 -10 1 1187 456 311 176 24 chr11 78966444 78966774 -42877082 + L2a LINE L2 1269 1648 -1771 1 1187 705 203 8 0 chr11 78966894 78967022 -42876834 - B1_Mur1 SINE Alu -9 140 12 1 1187 818 164 14 14 chr11 78967023 78967165 -42876691 + B1_Mur4 SINE Alu 3 144 -6 1 1187 786 265 23 28 chr11 78967216 78967433 -42876423 - ID_B1 SINE B4 -7 217 2 1 1187 282 304 51 0 chr11 78967452 78967531 -42876325 + L2a LINE L2 3340 3422 -4 1 1187 1363 60 54 0 chr11 78967618 78967803 -42876053 + B2_Mm2 SINE B2 1 195 0 1 1187 828 234 49 19 chr11 78967874 78968079 -42875777 - B3 SINE B2 -5 211 1 1 1187 384 230 77 39 chr11 78968095 78968199 -42875657 - PB1D10 SINE Alu 0 117 10 1 1187 221 289 84 53 chr11 78968124 78968219 -42875637 - ID_B1 SINE B4 -51 173 76 1 1187 948 160 0 0 chr11 78968226 78968426 -42875430 + (CA)n Simple_repeat Simple_repeat 1 200 0 1 1187 622 290 47 92 chr11 78969247 78969314 -42874542 - ID_B1 SINE B4 -25 267 204 1 1187 2330 159 195 82 chr11 78969314 78969863 -42873993 + RMER19C LTR ERVK 1 611 0 1 1187 622 264 52 47 chr11 78969863 78970032 -42873824 - ID_B1 SINE B4 -21 203 32 1 1187 735 62 0 0 chr11 78970056 78970153 -42873703 + (TTC)n Simple_repeat Simple_repeat 2 98 0 1 1187 937 116 6 64 chr11 78970159 78970316 -42873540 - B1_Mus1 SINE Alu 0 148 1 1 1187 1814 114 117 31 chr11 78970852 78971177 -42872679 - MTB_Mm LTR MaLR 0 407 55 1 1187 297 0 0 0 chr11 78971789 78971822 -42872034 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1187 574 278 19 53 chr11 78971823 78972032 -42871824 - ID_B1 SINE B4 -39 185 2 1 1187 214 271 47 0 chr11 78972044 78972129 -42871727 + MER5A DNA MER1_type 52 140 -49 1 1187 21 0 0 0 chr11 78972129 78972150 -42871706 + AT_rich Low_complexity Low_complexity 1 21 0 1 1187 654 24 24 0 chr11 78972507 78972589 -42871267 + B1_Mm SINE Alu 64 147 0 1 1187 306 175 0 0 chr11 78972647 78972727 -42871129 + CT-rich Low_complexity Low_complexity 1 80 0 1 1187 242 294 21 32 chr11 78972790 78972885 -42870971 + MLT1A1 LTR MaLR 311 404 -4 1 1187 591 289 18 24 chr11 78972892 78973062 -42870794 + MER89 LTR ERV1 326 494 -65 1 1187 5179 155 56 34 chr11 78973163 78974159 -42869697 - RMER1B Other Other 0 1066 49 1 1187 661 198 74 0 chr11 78974216 78974337 -42869519 - B1_Mur1 SINE Alu -18 131 2 1 1187 344 231 63 42 chr11 78974509 78974604 -42869252 - PB1D10 SINE Alu -18 99 3 1 1187 441 229 9 9 chr11 78974661 78974771 -42869085 + MLT1A LTR MaLR 52 161 -213 1 1187 390 233 11 22 chr11 78974836 78974928 -42868928 + MLT1A LTR MaLR 316 406 -2 1 1187 231 225 68 40 chr11 78975400 78975474 -42868382 + PB1D10 SINE Alu 4 79 -38 1 1187 432 0 0 0 chr11 78975596 78975644 -42868212 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1187 463 212 0 12 chr11 78975663 78975744 -42868112 - RSINE1 SINE B4 -84 81 2 1 1187 2292 151 58 20 chr11 78975897 78976297 -42867559 - MTC LTR MaLR -2 419 5 1 1187 346 342 40 73 chr11 78976417 78976691 -42867165 - L1M5 LINE L1 -441 5683 5419 1 1187 23 0 0 0 chr11 78976758 78976781 -42867075 + AT_rich Low_complexity Low_complexity 1 23 0 1 1187 1009 220 5 15 chr11 78976791 78976994 -42866862 - B3 SINE B2 -2 214 14 1 1187 345 47 0 0 chr11 78977155 78977198 -42866658 + (TTG)n Simple_repeat Simple_repeat 3 45 0 1 1187 597 258 8 0 chr11 78977198 78977322 -42866534 - B1_Mur1 SINE Alu -14 135 11 1 1187 506 233 20 189 chr11 78977328 78977529 -42866327 + B3A SINE B2 32 198 0 1 1187 442 194 50 10 chr11 78977739 78977838 -42866018 - PB1D10 SINE Alu -14 103 1 1 1187 460 169 22 11 chr11 78977749 78977839 -42866017 - ID_B1 SINE B4 -53 171 81 1 1187 1184 62 0 14 chr11 78978791 78978938 -42864918 + B1_Mus2 SINE Alu 3 147 0 1 1187 415 250 10 20 chr11 78978986 78979084 -42864772 - PB1D10 SINE Alu -12 105 9 1 1187 1029 194 43 14 chr11 78979113 78979322 -42864534 - B3 SINE B2 0 216 2 1 1187 361 276 48 0 chr11 78979379 78979484 -42864372 + PB1D10 SINE Alu 5 114 -3 1 1187 494 261 18 18 chr11 78980838 78980951 -42862905 + B1_Mur1 SINE Alu 36 148 -1 1 1187 308 239 99 0 chr11 78980996 78981067 -42862789 + B4 SINE B4 215 292 0 1 1187 378 0 0 0 chr11 78981085 78981127 -42862729 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1187 234 0 0 0 chr11 78981199 78981225 -42862631 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1187 4345 63 0 6 chr11 78981225 78981770 -42862086 + L1_Mus1 LINE L1 6023 6564 -3 1 1187 352 193 12 12 chr11 78981804 78981888 -42861968 + MamRep564 Unknown Unknown 160 243 -114 1 1187 564 286 99 83 chr11 78982083 78982409 -42861447 - ORR1E LTR MaLR -14 365 1 1 1187 1581 23 6 0 chr11 78982414 78982591 -42861265 + B2_Mm1t SINE B2 1 178 -15 1 1187 3326 79 0 0 chr11 78982591 78983023 -42860833 + L1Md_T LINE L1 6151 6582 0 1 1187 24 32 0 0 chr11 78983023 78983054 -42860802 + AT_rich Low_complexity Low_complexity 1 31 0 1 1187 1262 114 0 17 chr11 78983064 78983243 -42860613 + B2_Mm2 SINE B2 2 177 -18 1 1187 243 387 75 37 chr11 78983316 78983477 -42860379 - MIRb SINE MIR -77 191 25 1 1187 1295 261 97 110 chr11 78983557 78984176 -42859680 - RLTR18 LTR ERVK -5 611 1 1 1187 815 237 40 0 chr11 78984341 78984493 -42859363 + RSINE1 SINE B4 8 165 0 1 1187 480 298 30 30 chr11 78984498 78984633 -42859223 + B1F1 SINE Alu 15 149 0 1 1187 201 39 0 0 chr11 78984906 78984932 -42858924 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1187 953 112 189 87 chr11 78984957 78985153 -42858703 + B3 SINE B2 1 216 0 1 1187 680 174 0 34 chr11 78985165 78985284 -42858572 - B1_Mur1 SINE Alu 0 149 35 1 1187 222 267 86 106 chr11 78985330 78985356 -42858500 - B1_Mur3 SINE Alu 0 149 3 1 1187 558 203 137 8 chr11 78985356 78985480 -42858376 - ID_B1 SINE B4 -1 223 84 1 1187 847 132 0 0 chr11 78986036 78986157 -42857699 - B1_Mus1 SINE Alu -7 141 21 1 1187 699 206 0 0 chr11 78986222 78986402 -42857454 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1187 389 344 13 38 chr11 78986408 78986565 -42857291 - RSINE1 SINE B4 -4 161 9 1 1187 671 292 81 0 chr11 78986595 78986780 -42857076 - B4A SINE B4 -91 201 2 1 1187 902 198 10 34 chr11 78986884 78987084 -42856772 - ORR1C2 LTR MaLR -15 404 222 1 1187 211 150 125 0 chr11 78987087 78987167 -42856689 + (GCATG)n Simple_repeat Simple_repeat 1 90 0 1 1187 1334 181 77 32 chr11 78987169 78987277 -42856579 - ORR1C2 LTR MaLR -94 280 184 1 1187 543 43 0 0 chr11 78987277 78987347 -42856509 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1187 1334 171 81 15 chr11 78987347 78987528 -42856328 - ORR1C2 LTR MaLR -194 190 3 1 1187 957 202 83 0 chr11 78987687 78987880 -42855976 + B3 SINE B2 2 210 -6 1 1187 501 252 19 0 chr11 78988067 78988170 -42855686 - B1F1 SINE Alu -44 105 1 1 1187 758 328 112 48 chr11 78988358 78988491 -42855365 + MT2A LTR ERVL 129 252 -268 1 1187 207 100 0 0 chr11 78988491 78988521 -42855335 + (CTG)n Simple_repeat Simple_repeat 3 32 0 1 1187 758 317 126 17 chr11 78988521 78988782 -42855074 + MT2A LTR ERVL 228 527 -6 1 1187 625 213 99 0 chr11 78988870 78989011 -42854845 - RSINE1 SINE B4 -8 157 3 1 1187 434 245 177 0 chr11 78989073 78989220 -42854636 - B3A SINE B2 -22 176 4 1 1187 4083 120 2 112 chr11 78989353 78990150 -42853706 + RMER6A LTR ERVK 47 756 0 1 1187 852 272 14 9 chr11 78990596 78990815 -42853041 - ID_B1 SINE B4 -2 222 3 1 1187 1648 161 32 14 chr11 78990924 78991208 -42852648 + ORR1D1 LTR MaLR 45 333 -41 1 1187 1851 29 49 20 chr11 78991208 78991452 -42852404 + L1Md_F3 LINE L1 6303 6553 -31 1 1187 486 49 0 0 chr11 78991452 78991513 -42852343 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1187 283 141 0 0 chr11 78991513 78991561 -42852295 + ORR1D1 LTR MaLR 323 373 -11 1 1187 248 173 54 71 chr11 78992319 78992375 -42851481 + MLT1A1 LTR MaLR 354 408 0 1 1187 356 103 17 0 chr11 78992595 78992653 -42851203 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1187 990 102 0 52 chr11 78992771 78992926 -42850930 + B1_Mur3 SINE Alu 2 148 -1 1 1187 324 0 0 0 chr11 78993014 78993050 -42850806 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1187 434 278 11 0 chr11 78993068 78993158 -42850698 + RSINE1 SINE B4 44 134 -31 1 1187 330 194 0 0 chr11 78993162 78993229 -42850627 + GA-rich Low_complexity Low_complexity 1 67 0 1 1187 918 122 0 0 chr11 78993350 78993530 -42850326 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1187 487 269 17 8 chr11 78993530 78993650 -42850206 - RSINE1 SINE B4 -42 123 3 1 1187 890 222 13 94 chr11 78993973 78994197 -42849659 - ID_B1 SINE B4 0 224 19 1 1187 362 317 63 37 chr11 78994355 78994545 -42849311 + L2a LINE L2 3205 3399 -27 1 1187 698 250 178 48 chr11 78994586 78994817 -42849039 - B4 SINE B4 0 292 32 1 1187 550 250 59 22 chr11 78994872 78995007 -42848849 + B1F SINE Alu 1 140 -9 1 1187 377 205 95 12 chr11 78995051 78995135 -42848721 + B1F1 SINE Alu 2 92 -57 1 1187 215 327 62 26 chr11 78995180 78995293 -42848563 - MIRc SINE MIR -105 163 47 1 1187 279 267 53 0 chr11 78995695 78995770 -42848086 + PB1D10 SINE Alu 38 116 -1 1 1187 209 330 129 31 chr11 78997459 78997653 -42846203 + L3 LINE CR1 4164 4376 -113 1 1187 800 175 6 0 chr11 78998231 78998391 -42845465 + CT-rich Low_complexity Low_complexity 3 163 0 1 1187 1232 28 14 7 chr11 78998391 78998402 -42845454 - B1_Mm SINE Alu 0 147 135 1 1187 279 0 0 0 chr11 78998402 78998433 -42845423 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1187 1232 28 14 7 chr11 78998433 78998567 -42845289 - B1_Mm SINE Alu -13 134 1 1 1187 321 311 46 19 chr11 78998617 78998725 -42845131 + PB1D10 SINE Alu 1 111 -6 1 1187 631 231 46 0 chr11 78998728 78998858 -42844998 + RSINE1 SINE B4 2 137 -28 1 1187 227 259 210 54 chr11 78998858 78998895 -42844961 + B2_Mm1a SINE B2 1 193 0 1 1187 652 206 112 17 chr11 78998961 78998997 -42844859 - B3A SINE B2 0 198 164 1 1187 342 0 0 0 chr11 78998997 78999035 -42844821 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1187 652 206 112 17 chr11 78999035 78999176 -42844680 - B3A SINE B2 -35 163 4 1 1187 328 269 157 37 chr11 78999261 78999369 -42844487 - B4A SINE B4 -169 123 3 1 1187 241 294 0 0 chr11 78999403 78999454 -42844402 - ID SINE ID -153 71 21 1 1187 503 184 148 7 chr11 78999529 78999671 -42844185 - Lx3C LINE L1 -63 6913 6752 1 1187 325 265 118 47 chr11 78999749 78999782 -42844074 + YREP_Mm Unknown Unknown 136 313 -1495 1 1187 654 271 8 0 chr11 78999782 78999915 -42843941 - ID_B1 SINE B4 -7 217 84 1 1187 1863 18 14 0 chr11 79000160 79000407 -42843449 - L1Md_A LINE L1 0 6582 6361 1 1187 619 180 6 11 chr11 79000414 79000594 -42843262 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1187 722 172 0 11 chr11 79000631 79000813 -42843043 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1187 414 232 24 0 chr11 79000813 79000895 -42842961 - RSINE1 SINE B4 0 165 82 3 1187 260 343 57 0 chr11 79000981 79001086 -42842770 + MLT1K LTR MaLR 136 246 -349 4 1187 236 304 226 40 chr11 79001380 79001606 -42842250 - MLT1J LTR MaLR -208 304 37 5 1187 219 210 97 0 chr11 79002606 79002668 -42841188 + MIRb SINE MIR 1 68 -200 6 1187 306 245 93 19 chr11 79002676 79002784 -42841072 + PB1D10 SINE Alu 1 116 -1 7 1187 338 274 51 34 chr11 79002906 79003023 -42840833 + ID_B1 SINE B4 84 202 -22 8 1187 776 53 58 17 chr11 79003119 79003291 -42840565 + (CA)n Simple_repeat Simple_repeat 1 179 0 9 1187 470 115 56 21 chr11 79003307 79003654 -42840202 + (CA)n Simple_repeat Simple_repeat 1 359 0 9 1187 212 265 20 0 chr11 79003676 79003725 -42840131 + MIR SINE MIR 55 104 -158 6 1187 1253 185 0 9 chr11 79003729 79003947 -42839909 - B3 SINE B2 0 216 1 1 1187 256 261 114 0 chr11 79003947 79004035 -42839821 + MIR SINE MIR 92 189 -73 6 1187 752 239 12 8 chr11 79004040 79004200 -42839656 + ID_B1 SINE B4 68 224 -68 1 1187 232 354 25 0 chr11 79004471 79004550 -42839306 - ID4_ SINE ID -2 81 1 1 1187 241 264 15 25 chr11 79005090 79005175 -42838681 + MIR SINE MIR 45 122 -154 1 1187 369 233 14 0 chr11 79005248 79005321 -42838535 - ID4_ SINE ID -7 76 3 1 1187 2653 32 0 3 chr11 79005994 79006352 -42837504 - L1_Mus1 LINE L1 0 6567 6249 1 1187 320 335 148 10 chr11 79007335 79007424 -42836432 - MIRb SINE MIR -21 247 158 1 1187 2043 110 21 68 chr11 79007424 79007764 -42836092 - ORR1A4 LTR MaLR -1 328 5 1 1187 320 335 148 10 chr11 79007764 79007870 -42835986 - MIRb SINE MIR -111 157 25 1 1187 468 0 0 0 chr11 79008123 79008175 -42835681 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1187 977 144 0 0 chr11 79008326 79008472 -42835384 + B1_Mur2 SINE Alu 3 148 -1 1 1187 433 318 0 0 chr11 79008518 79008628 -42835228 - B1_Mur1 SINE Alu -31 118 9 2 1187 1102 171 6 0 chr11 79008673 79008843 -42835013 + B3 SINE B2 2 172 -44 2 1187 630 298 0 56 chr11 79008859 79009019 -42834837 + RSINE1 SINE B4 9 159 -6 2 1187 719 286 67 0 chr11 79009089 79009299 -42834557 + ID_B1 SINE B4 1 224 0 2 1187 986 118 0 0 chr11 79009313 79009448 -42834408 + B1_Mus2 SINE Alu 13 147 0 2 1187 314 333 246 24 chr11 79009507 79009836 -42834020 + L1MEf LINE L1 1524 1925 -4275 2 1187 442 194 73 18 chr11 79009862 79009972 -42833884 + PB1D10 SINE Alu 2 117 0 2 1187 411 106 0 0 chr11 79010004 79010070 -42833786 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1187 736 253 0 0 chr11 79010073 79010219 -42833637 - B3 SINE B2 -66 150 5 2 1187 203 311 27 13 chr11 79011160 79011235 -42832621 - L2c LINE L2 -232 3155 3080 2 1187 344 314 55 31 chr11 79011235 79011363 -42832493 + ID_B1 SINE B4 82 212 -12 3 1187 1364 229 62 59 chr11 79011374 79011732 -42832124 - ORR1E LTR MaLR 0 359 1 3 1187 827 237 116 0 chr11 79013224 79013422 -42830434 - ID_B1 SINE B4 0 224 4 3 1187 519 324 118 51 chr11 79013464 79013749 -42830107 - MLT1C LTR MaLR 0 467 177 3 1187 276 30 0 0 chr11 79013749 79013782 -42830074 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1187 519 324 118 51 chr11 79013782 79013928 -42829928 - MLT1C LTR MaLR -291 176 7 3 1187 369 130 0 0 chr11 79014594 79014648 -42829208 + ORR1C2 LTR MaLR 3 56 -328 3 1187 489 198 29 19 chr11 79014844 79014947 -42828909 - B1_Mur3 SINE Alu -45 104 1 3 1187 305 258 35 105 chr11 79014947 79014984 -42828872 - MT2B LTR ERVL -341 257 128 3 1187 218 328 27 104 chr11 79015015 79015274 -42828582 + L2b LINE L2 3048 3286 -89 3 1187 580 230 9 0 chr11 79015314 79015427 -42828429 + PB1D10 SINE Alu 2 115 -2 3 1187 3333 45 25 0 chr11 79015452 79015853 -42828003 + RLTR10A LTR ERVK 1 411 0 4 1187 246 274 0 0 chr11 79015927 79015998 -42827858 + polypurine Low_complexity Low_complexity 1 71 0 4 1187 449 293 0 8 chr11 79016499 79016616 -42827240 - RCHARR1 DNA MER1_type -8 966 851 4 1187 410 240 52 0 chr11 79016661 79016757 -42827099 - B1_Mur2 SINE Alu 0 149 49 4 1187 492 288 16 0 chr11 79016756 79016881 -42826975 + RSINE1 SINE B4 15 141 -24 4 1187 189 107 0 0 chr11 79016893 79016921 -42826935 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1187 354 205 60 0 chr11 79016932 79017015 -42826841 - RCHARR1 DNA MER1_type -222 752 665 4 1187 291 197 30 0 chr11 79017045 79017111 -42826745 - B3 SINE B2 0 216 149 4 1187 251 302 48 56 chr11 79017869 79017881 -42825975 - B1_Mm SINE Alu -22 125 5 4 1187 472 273 18 0 chr11 79017881 79017991 -42825865 - ID_B1 SINE B4 -27 197 86 4 1187 327 268 0 0 chr11 79018377 79018459 -42825397 + (CCA)n Simple_repeat Simple_repeat 3 84 0 4 1187 254 305 206 0 chr11 79018471 79018612 -42825244 + L1M5 LINE L1 5483 5652 -521 5 1187 688 208 8 0 chr11 79018630 79018750 -42825106 + B1_Mur1 SINE Alu 19 139 -10 5 1187 1061 78 21 0 chr11 79018865 79019006 -42824850 - B1_Mus1 SINE Alu 0 148 5 5 1187 183 80 0 0 chr11 79019019 79019044 -42824812 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1187 1112 81 0 12 chr11 79019340 79019502 -42824354 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 5 1187 249 59 0 0 chr11 79019502 79019536 -42824320 - B1_Mm SINE Alu -19 128 95 5 1187 237 315 0 0 chr11 79019631 79019685 -42824171 + RCHARR1 DNA MER1_type 189 242 -732 5 1187 628 210 42 7 chr11 79019744 79019888 -42823968 + RCHARR1 DNA MER1_type 348 496 -478 5 1187 871 231 80 10 chr11 79019888 79020089 -42823767 + B3 SINE B2 1 215 -1 5 1187 316 303 63 79 chr11 79020195 79020385 -42823471 - L2 LINE L2 -667 2752 2566 5 1187 224 326 90 0 chr11 79020387 79020476 -42823380 + PB1D10 SINE Alu 1 97 -20 5 1187 270 0 0 0 chr11 79020476 79020506 -42823350 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1187 288 186 0 0 chr11 79020523 79020582 -42823274 + GA-rich Low_complexity Low_complexity 4 62 0 6 1187 439 273 32 32 chr11 79020655 79020810 -42823046 - L2 LINE L2 -869 2550 2396 5 1187 403 233 31 20 chr11 79021220 79021339 -42822517 - MTEa LTR MaLR -5 374 248 6 1187 1182 68 7 0 chr11 79021517 79021664 -42822192 + B1_Mus1 SINE Alu 1 148 0 6 1187 717 12 0 0 chr11 79021666 79021681 -42822175 + (GAA)n Simple_repeat Simple_repeat 3 17 0 6 1187 1476 34 0 0 chr11 79021681 79021859 -42821997 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 1187 717 12 0 0 chr11 79021859 79021927 -42821929 + (GAA)n Simple_repeat Simple_repeat 3 70 0 6 1187 449 210 291 18 chr11 79022220 79022385 -42821471 - B3 SINE B2 -6 210 1 6 1187 206 318 160 51 chr11 79022472 79022628 -42821228 - MIRb SINE MIR -12 256 84 6 1187 623 250 20 137 chr11 79023139 79023343 -42820513 - B3A SINE B2 -16 182 3 6 1187 206 295 2 0 chr11 79023345 79023399 -42820457 - MIRm SINE MIR -119 157 96 7 1187 300 297 60 103 chr11 79023784 79023828 -42820028 - L1M2 LINE L1 -2838 3305 3265 7 1187 860 199 0 0 chr11 79023828 79023969 -42819887 - B1_Mur2 SINE Alu -7 142 2 7 1187 300 297 60 103 chr11 79023969 79024157 -42819699 - L1M2 LINE L1 -2879 3264 3083 7 1187 1200 68 0 0 chr11 79024176 79024323 -42819533 - B1_Mus2 SINE Alu 0 147 1 7 1187 701 264 33 6 chr11 79024346 79024529 -42819327 - ID_B1 SINE B4 0 224 37 7 1187 987 194 139 89 chr11 79024529 79024842 -42819014 + MTD LTR MaLR 1 363 -56 7 1187 1672 168 115 15 chr11 79024842 79025004 -42818852 + ORR1D1 LTR MaLR 2 162 -212 7 1187 258 56 0 0 chr11 79025004 79025040 -42818816 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 7 1187 1672 168 115 15 chr11 79025040 79025086 -42818770 + ORR1D1 LTR MaLR 163 221 -153 7 1187 230 0 33 0 chr11 79025086 79025116 -42818740 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 7 1187 1672 168 115 15 chr11 79025116 79025245 -42818611 + ORR1D1 LTR MaLR 222 370 -4 7 1187 987 153 104 82 chr11 79025245 79025309 -42818547 + MTD LTR MaLR 364 419 0 7 1187 295 354 106 0 chr11 79025430 79025543 -42818313 - L2a LINE L2 -3 3423 3299 7 1187 200 330 43 0 chr11 79025566 79025660 -42818196 - MIR SINE MIR -37 225 128 8 1187 644 197 0 7 chr11 79025723 79025807 -42818049 + (TA)n Simple_repeat Simple_repeat 1 84 0 8 1187 2727 52 96 6 chr11 79025807 79026171 -42817685 + MTB LTR MaLR 2 398 -2 8 1187 243 0 0 0 chr11 79026171 79026198 -42817658 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1187 644 197 0 7 chr11 79026198 79026260 -42817596 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1187 801 140 73 0 chr11 79026880 79027016 -42816840 - B1_Mur4 SINE Alu -1 149 4 8 1187 1194 68 0 0 chr11 79030146 79030293 -42813563 + B1_Mus1 SINE Alu 2 148 0 8 1187 244 40 0 107 chr11 79030299 79030355 -42813501 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 8 1187 300 286 141 35 chr11 79030562 79030761 -42813095 + L1M4 LINE L1 5170 5389 -757 8 1187 348 281 0 0 chr11 79030796 79030878 -42812978 + RSINE1 SINE B4 46 127 -38 8 1187 482 188 129 110 chr11 79031031 79031240 -42812616 + B3 SINE B2 1 213 -3 9 1187 229 200 42 14 chr11 79031311 79031382 -42812474 + B3 SINE B2 144 216 0 9 1187 239 293 73 0 chr11 79031493 79031575 -42812281 + MT2B2 LTR ERVL 155 242 -342 9 1187 331 292 0 53 chr11 79031508 79031602 -42812254 + PB1D10 SINE Alu 23 111 -6 9 1187 396 0 0 0 chr11 79031602 79031646 -42812210 + (TTG)n Simple_repeat Simple_repeat 1 44 0 9 1187 1125 181 40 0 chr11 79031650 79031849 -42812007 + B3 SINE B2 2 208 -8 9 1187 288 0 0 0 chr11 79031853 79031885 -42811971 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 9 1187 832 178 0 0 chr11 79031886 79032015 -42811841 - B1_Mur4 SINE Alu 0 150 22 9 1187 24 32 0 0 chr11 79032015 79032046 -42811810 + AT_rich Low_complexity Low_complexity 1 31 0 9 1187 1244 34 0 0 chr11 79032055 79032203 -42811653 + B2_Mm2 SINE B2 1 148 -47 9 1187 424 111 25 0 chr11 79032204 79032285 -42811571 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1187 285 316 84 17 chr11 79032289 79032408 -42811448 + B1F SINE Alu 2 128 -19 1 1187 261 0 0 0 chr11 79032785 79032814 -42811042 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1187 405 264 139 66 chr11 79033175 79033434 -42810422 + MT2A LTR ERVL 86 363 -170 1 1187 227 276 35 140 chr11 79033563 79033677 -42810179 + MT2B LTR ERVL 156 257 -344 1 1187 826 200 0 0 chr11 79033577 79033722 -42810134 + B1_Mur2 SINE Alu 5 149 0 1 1187 288 316 158 0 chr11 79033922 79034036 -42809820 - ORR1E LTR MaLR -227 132 1 1 1187 277 213 0 0 chr11 79034044 79034105 -42809751 + L1M4 LINE L1 5769 5829 -350 8 1187 247 329 0 28 chr11 79034106 79034178 -42809678 + ID4_ SINE ID 3 72 -11 1 1187 311 329 0 0 chr11 79034193 79034278 -42809578 + L1MB8 LINE L1 5815 5899 -279 1 1187 480 320 13 26 chr11 79034309 79034460 -42809396 + RSINE1 SINE B4 17 165 0 1 1187 190 172 20 29 chr11 79034460 79034562 -42809294 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 1187 235 108 0 0 chr11 79034588 79034625 -42809231 - B3 SINE B2 -179 37 1 1 1187 1270 121 70 0 chr11 79034793 79034992 -42808864 + B3 SINE B2 4 216 0 1 1187 1160 95 0 0 chr11 79035012 79035159 -42808697 + B1_Mus1 SINE Alu 1 147 -1 1 1187 4296 83 5 28 chr11 79035497 79036077 -42807779 + RMER2 LTR ERV1 1 567 0 1 1188 237 146 0 0 chr11 79036506 79036554 -42807302 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1188 1249 48 7 0 chr11 79036557 79036703 -42807153 - B1_Mus1 SINE Alu 0 148 2 1 1188 308 273 194 24 chr11 79036770 79036894 -42806962 + RSINE1 SINE B4 4 148 -17 1 1188 1927 151 56 41 chr11 79037451 79037844 -42806012 + RMER1C Other Other 936 1334 -8 1 1188 309 26 0 0 chr11 79038746 79038784 -42805072 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 1 1188 764 199 7 22 chr11 79038886 79039025 -42804831 + MT2A LTR ERVL 1 137 -396 1 1188 566 186 49 0 chr11 79039037 79039139 -42804717 + MT2A LTR ERVL 358 464 -69 1 1188 788 205 144 55 chr11 79039148 79039412 -42804444 - MT2A LTR ERVL -173 428 124 1 1188 1661 42 0 0 chr11 79039791 79039984 -42803872 - B2_Mm1a SINE B2 0 193 1 1 1188 216 321 23 45 chr11 79040066 79040154 -42803702 - RSINE1 SINE B4 -1 164 79 1 1188 219 164 68 82 chr11 79040155 79040228 -42803628 - PB1D9 SINE Alu -9 111 40 1 1188 1027 120 72 0 chr11 79040239 79040406 -42803450 + RMER4B LTR ERVK 1 179 -406 1 1188 1020 120 72 2 chr11 79040408 79040591 -42803265 + B2_Mm2 SINE B2 1 193 0 1 1188 591 85 0 0 chr11 79040734 79040816 -42803040 + (CTA)n Simple_repeat Simple_repeat 1 82 0 1 1188 478 238 60 28 chr11 79040943 79040986 -42802870 - ID_B1 SINE B4 -81 211 123 1 1188 488 209 77 0 chr11 79040986 79041077 -42802779 - B1_Mur2 SINE Alu -51 98 1 1 1188 478 238 60 28 chr11 79041077 79041115 -42802741 - ID_B1 SINE B4 -81 122 39 1 1188 282 206 0 0 chr11 79041615 79041683 -42802173 + CT-rich Low_complexity Low_complexity 1 68 0 1 1188 508 195 292 0 chr11 79041683 79041796 -42802060 - B1_Mus2 SINE Alu -1 146 1 1 1188 220 271 0 0 chr11 79041797 79041845 -42802011 - PB1D10 SINE Alu -43 74 27 1 1188 611 289 101 0 chr11 79041979 79042128 -42801728 + B3A SINE B2 1 164 -34 1 1188 188 86 29 0 chr11 79042140 79042175 -42801681 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1188 261 211 35 0 chr11 79042181 79042238 -42801618 + B1_Mus1 SINE Alu 1 59 -89 1 1188 737 93 0 0 chr11 79042276 79042373 -42801483 + B1_Mus2 SINE Alu 42 138 -9 1 1188 219 69 0 0 chr11 79044074 79044103 -42799753 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 1 1188 407 304 197 39 chr11 79044272 79044577 -42799279 - ORR1E LTR MaLR 0 359 7 1 1188 394 273 51 36 chr11 79044666 79044803 -42799053 - MLT1A0 LTR MaLR -7 358 220 1 1188 347 209 90 24 chr11 79044836 79044936 -42798920 - MLT1A0 LTR MaLR -218 156 55 1 1188 703 251 215 8 chr11 79045312 79045549 -42798307 - B4A SINE B4 -6 286 1 1 1188 231 274 14 14 chr11 79045580 79045654 -42798202 - ID4_ SINE ID -5 78 5 1 1188 888 256 35 15 chr11 79045878 79046076 -42797780 - B3 SINE B2 0 216 15 1 1188 2428 132 49 49 chr11 79046184 79046653 -42797203 - IAPLTR2_Mm LTR ERVK -6 469 1 1 1188 20347 18 3 0 chr11 79046653 79049005 -42794851 - IAPEz-int LTR ERVK 0 6481 4123 1 1188 889 88 24 0 chr11 79049007 79049132 -42794724 - IAPEz-int LTR ERVK -2770 4910 4783 1 1188 1722 114 0 0 chr11 79049127 79049373 -42794483 - IAPEz-int LTR ERVK -5183 2497 2252 1 1188 413 98 0 32 chr11 79049378 79049441 -42794415 - IAPEz-int LTR ERVK -5062 1419 1359 1 1188 4651 70 4 53 chr11 79049441 79050135 -42793721 - IAPEz-int LTR ERVK -5819 662 3 1 1188 2428 132 49 49 chr11 79050138 79050607 -42793249 - IAPLTR2_Mm LTR ERVK -6 469 1 1 1188 556 248 146 0 chr11 79050720 79050857 -42792999 - B3 SINE B2 -45 171 15 1 1188 189 0 0 0 chr11 79051232 79051253 -42792603 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1188 436 136 35 58 chr11 79051819 79051905 -42791951 + PB1D9 SINE Alu 37 120 0 1 1188 32 91 0 0 chr11 79052264 79052352 -42791504 + AT_rich Low_complexity Low_complexity 1 88 0 1 1188 242 316 80 50 chr11 79054394 79054494 -42789362 - B1F2 SINE Alu -30 119 17 1 1188 392 243 36 27 chr11 79054876 79054986 -42788870 + PB1D10 SINE Alu 5 115 -2 1 1188 186 133 0 0 chr11 79056847 79056877 -42786979 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1188 189 0 0 0 chr11 79057273 79057294 -42786562 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 1 1188 26 50 0 0 chr11 79057506 79057546 -42786310 + AT_rich Low_complexity Low_complexity 1 40 0 1 1188 393 219 24 0 chr11 79058226 79058308 -42785548 - B1_Mur2 SINE Alu -5 144 61 1 1188 408 238 218 30 chr11 79058337 79058502 -42785354 + B3A SINE B2 2 197 -1 1 1188 226 333 29 29 chr11 79058520 79058588 -42785268 + B1_Mur3 SINE Alu 1 68 -81 1 1188 23 0 0 0 chr11 79058793 79058816 -42785040 + AT_rich Low_complexity Low_complexity 1 23 0 1 1188 1230 101 38 22 chr11 79058820 79059003 -42784853 - B2_Mm2 SINE B2 -9 186 1 1 1188 387 262 64 27 chr11 79059033 79059143 -42784713 - B3 SINE B2 -8 208 95 1 1188 224 274 41 31 chr11 79059306 79059404 -42784452 - PB1D10 SINE Alu 0 117 19 1 1188 721 206 50 0 chr11 79059473 79059614 -42784242 + B1_Mur1 SINE Alu 2 149 0 1 1188 415 51 0 0 chr11 79060366 79060425 -42783431 - B1_Mus1 SINE Alu -88 60 2 1 1188 362 238 0 110 chr11 79060425 79060484 -42783372 - ID_B1 SINE B4 -84 140 36 1 1188 596 212 28 35 chr11 79060565 79060707 -42783149 - B1_Mur1 SINE Alu 0 149 9 1 1188 259 289 58 79 chr11 79060584 79060723 -42783133 - B4A SINE B4 -80 212 77 1 1188 1142 82 0 0 chr11 79060792 79060939 -42782917 + B1_Mus2 SINE Alu 1 147 0 1 1188 208 96 19 37 chr11 79060939 79060993 -42782863 + A-rich Low_complexity Low_complexity 3 55 0 1 1188 480 152 129 20 chr11 79061035 79061136 -42782720 + PB1D9 SINE Alu 1 112 -8 1 1188 1574 140 161 0 chr11 79061147 79061426 -42782430 + ORR1A2 LTR MaLR 4 327 0 1 1188 663 245 67 36 chr11 79061444 79061639 -42782217 + ID_B1 SINE B4 4 204 -20 1 1188 23 0 0 0 chr11 79061801 79061824 -42782032 + AT_rich Low_complexity Low_complexity 1 23 0 1 1188 1414 76 16 0 chr11 79062592 79062776 -42781080 - B2_Mm2 SINE B2 -7 188 2 1 1188 429 354 22 28 chr11 79063133 79063313 -42780543 + ID_B1 SINE B4 18 196 -28 1 1188 264 240 120 40 chr11 79063343 79063443 -42780413 + PB1D10 SINE Alu 5 112 -5 1 1188 297 0 0 0 chr11 79063585 79063618 -42780238 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1188 345 229 66 0 chr11 79063745 79063850 -42780006 - B1F1 SINE Alu -28 121 5 1 1188 216 258 30 61 chr11 79063796 79063862 -42779994 - B4A SINE B4 -147 145 82 1 1188 475 170 18 62 chr11 79063860 79063973 -42779883 - PB1D9 SINE Alu 0 120 13 1 1188 2970 3 0 0 chr11 79064066 79064391 -42779465 + L1Md_T LINE L1 6258 6582 0 1 1188 241 200 100 0 chr11 79064870 79064930 -42778926 + PB1 SINE Alu 54 119 -8 1 1188 439 274 0 0 chr11 79065196 79065291 -42778565 + RSINE1 SINE B4 3 97 -68 1 1188 584 89 11 0 chr11 79065327 79065417 -42778439 - B1_Mus2 SINE Alu 0 147 57 1 1188 620 164 98 63 chr11 79065524 79065667 -42778189 + B1_Mur4 SINE Alu 2 149 -1 1 1188 299 329 22 87 chr11 79065789 79065972 -42777884 - L3 LINE CR1 -356 4133 3963 1 1188 270 295 135 56 chr11 79069231 79069497 -42774359 - B4 SINE B4 -2 290 4 1 1188 620 319 29 10 chr11 79069561 79069770 -42774086 + ID_B1 SINE B4 7 219 -5 1 1188 896 155 7 0 chr11 79069843 79069991 -42773865 - B1_Mur4 SINE Alu -1 149 1 1 1188 655 251 50 22 chr11 79070434 79070590 -42773266 + MTE2b LTR MaLR 18 182 -197 1 1188 793 184 160 16 chr11 79070590 79070778 -42773078 + B3 SINE B2 2 216 0 1 1188 655 251 50 22 chr11 79070778 79070800 -42773056 + MTE2b LTR MaLR 183 201 -178 1 1188 1324 226 113 22 chr11 79070850 79071221 -42772635 + MTD LTR MaLR 1 405 -14 1 1188 2295 112 22 0 chr11 79071240 79071560 -42772296 + ORR1A2 LTR MaLR 1 327 0 1 1188 412 283 43 7 chr11 79071683 79071822 -42772034 - B1F SINE Alu -5 144 1 1 1188 360 0 0 0 chr11 79072077 79072117 -42771739 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 1 1188 901 84 91 0 chr11 79072117 79072260 -42771596 - B2_Mm1t SINE B2 -37 156 1 1 1188 689 287 30 30 chr11 79072327 79072564 -42771292 - ORR1E LTR MaLR -120 239 3 1 1188 1033 209 0 66 chr11 79072934 79073175 -42770681 + URR1B DNA MER1_type 1 225 0 1 1188 724 224 21 38 chr11 79073298 79073484 -42770372 + B3A SINE B2 1 183 -15 1 1188 608 246 0 56 chr11 79073701 79073843 -42770013 + B1_Mur1 SINE Alu 4 137 -12 1 1188 477 50 0 0 chr11 79073843 79073903 -42769953 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1188 694 59 0 47 chr11 79073903 79074010 -42769846 - B1_Mus2 SINE Alu 0 147 46 2 1188 291 211 0 78 chr11 79073957 79074034 -42769822 - RLTR25A LTR ERVK -531 572 502 2 1188 955 126 0 7 chr11 79074240 79074376 -42769480 + B1_Mus1 SINE Alu 1 135 -13 2 1188 1087 95 0 26 chr11 79074378 79074529 -42769327 + B1_Mm SINE Alu 1 147 0 2 1188 237 108 0 0 chr11 79074529 79074566 -42769290 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 2 1188 306 0 0 0 chr11 79074576 79074610 -42769246 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2 1188 995 111 0 27 chr11 79074808 79074956 -42768900 + B1_Mur4 SINE Alu 5 148 -2 2 1188 252 239 15 0 chr11 79075020 79075087 -42768769 + ORR1E LTR MaLR 285 352 -7 2 1188 216 111 0 0 chr11 79075087 79075123 -42768733 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1188 382 162 95 0 chr11 79075155 79075229 -42768627 - B1_Mur1 SINE Alu -2 147 67 2 1188 757 229 87 20 chr11 79075241 79075437 -42768419 + B3 SINE B2 8 216 0 2 1188 486 242 65 50 chr11 79075457 79075514 -42768342 - B1F SINE Alu -7 142 87 2 1188 2743 122 45 2 chr11 79075514 79075918 -42767938 + MTC LTR MaLR 1 421 0 2 1188 486 242 65 50 chr11 79075918 79075954 -42767902 - B1F SINE Alu -63 86 55 2 1188 2792 90 10 47 chr11 79075954 79076142 -42767714 + MTA_Mm LTR MaLR 5 192 -204 2 1188 1192 35 0 7 chr11 79076142 79076286 -42767570 + B1_Mus1 SINE Alu 1 143 -5 2 1188 381 22 0 0 chr11 79076287 79076333 -42767523 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1188 2792 90 10 47 chr11 79076333 79076549 -42767307 + MTA_Mm LTR MaLR 193 396 0 2 1188 486 242 65 50 chr11 79076549 79076593 -42767263 - B1F SINE Alu -95 54 4 2 1188 470 273 88 27 chr11 79076594 79076741 -42767115 - ID_B1 SINE B4 -4 220 65 2 1188 294 205 202 12 chr11 79076808 79076892 -42766964 + B1_Mus2 SINE Alu 1 100 -47 2 1188 311 308 67 20 chr11 79077186 79077335 -42766521 - RSINE1 SINE B4 -1 164 9 2 1188 1164 95 60 0 chr11 79077511 79077679 -42766177 + B2_Mm1a SINE B2 2 179 -14 2 1188 419 101 321 27 chr11 79077721 79077833 -42766023 + B2_Mm2 SINE B2 48 192 -3 2 1188 246 105 0 0 chr11 79077894 79077932 -42765924 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2 1188 283 286 0 0 chr11 79077932 79078009 -42765847 - ID4 SINE ID -4 79 3 2 1188 271 390 78 27 chr11 79078313 79078571 -42765285 - B4A SINE B4 -21 271 1 2 1188 606 178 0 53 chr11 79078602 79078715 -42765141 + PB1D9 SINE Alu 3 109 -11 2 1188 417 20 0 0 chr11 79078721 79078771 -42765085 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1188 2034 132 75 16 chr11 79078774 79079150 -42764706 - MTC LTR MaLR -14 407 10 2 1188 276 315 19 63 chr11 79079260 79079448 -42764408 + L1ME1 LINE L1 5823 6007 -157 2 1188 283 220 42 14 chr11 79079492 79079635 -42764221 + ORR1B1-int LTR MaLR 614 760 -749 2 1188 832 27 0 18 chr11 79079520 79079634 -42764222 + B1_Mm SINE Alu 1 112 -35 2 1188 248 261 40 112 chr11 79079615 79079740 -42764116 + B3 SINE B2 63 178 -38 2 1188 521 197 8 23 chr11 79079634 79079648 -42764208 + ID_B1 SINE B4 82 207 -17 2 1188 347 216 35 0 chr11 79079897 79080013 -42763843 + CT-rich Low_complexity Low_complexity 1 120 0 2 1188 1907 143 62 42 chr11 79080057 79080459 -42763397 + RMER17C LTR ERVK 1 410 0 2 1188 248 327 120 9 chr11 79080461 79080569 -42763287 + B1F SINE Alu 1 120 -29 2 1188 375 182 0 0 chr11 79080575 79080652 -42763204 + (CAA)n Simple_repeat Simple_repeat 1 77 0 2 1188 1172 29 0 0 chr11 79081344 79081480 -42762376 - B1_Mus2 SINE Alu -10 137 2 2 1188 884 226 6 11 chr11 79081529 79081712 -42762144 - B3 SINE B2 -5 211 30 2 1188 2311 123 40 13 chr11 79081709 79082104 -42761752 + MTC LTR MaLR 8 413 -8 2 1188 657 178 0 8 chr11 79082155 79082274 -42761582 - PB1D9 SINE Alu -1 119 2 2 1188 228 250 77 15 chr11 79082691 79082756 -42761100 + ID4_ SINE ID 1 69 -14 2 1188 426 39 0 0 chr11 79082759 79082811 -42761045 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1188 281 283 108 48 chr11 79082874 79083041 -42760815 - Lx8 LINE L1 0 7473 7297 2 1188 388 181 0 0 chr11 79083042 79083114 -42760742 + B3 SINE B2 140 211 -5 2 1188 372 223 133 19 chr11 79083440 79083545 -42760311 - PB1D10 SINE Alu 0 117 1 2 1188 353 208 8 40 chr11 79083628 79083753 -42760103 + (TATATG)n Simple_repeat Simple_repeat 6 126 0 2 1188 677 234 30 99 chr11 79083982 79084214 -42759642 - B3A SINE B2 0 216 1 2 1188 541 284 42 10 chr11 79084236 79084428 -42759428 - B3A SINE B2 0 198 1 2 1188 1985 139 18 12 chr11 79084840 79085167 -42758689 - ORR1A4 LTR MaLR 0 329 1 2 1188 1390 80 27 0 chr11 79085253 79085440 -42758416 + B2_Mm1a SINE B2 2 193 0 2 1188 329 134 12 49 chr11 79085524 79085598 -42758258 + B2_Mm2 SINE B2 47 121 -95 2 1188 1672 26 5 0 chr11 79085628 79085819 -42758037 + B2_Mm1a SINE B2 2 193 0 2 1188 474 18 0 0 chr11 79086215 79086270 -42757586 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1188 771 145 81 0 chr11 79086285 79086409 -42757447 - B1_Mur4 SINE Alu -15 135 2 2 1188 189 107 0 0 chr11 79086560 79086588 -42757268 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1188 526 212 9 0 chr11 79086915 79087028 -42756828 + PB1D9 SINE Alu 7 120 0 2 1188 423 311 194 14 chr11 79087148 79087432 -42756424 - Zaphod DNA Tip100 -3597 434 100 2 1188 509 222 81 0 chr11 79087515 79087654 -42756202 - B1F2 SINE Alu 0 149 1 2 1188 730 78 17 0 chr11 79087680 79087795 -42756061 + (TC)n Simple_repeat Simple_repeat 2 118 0 2 1188 511 246 15 15 chr11 79087820 79087952 -42755904 - ID_B1 SINE B4 -8 216 85 2 1188 231 125 0 0 chr11 79088060 79088100 -42755756 + (TTC)n Simple_repeat Simple_repeat 1 40 0 2 1188 800 146 0 19 chr11 79088101 79088268 -42755588 - B1_Mus2 SINE Alu -15 134 1 2 1188 540 269 81 59 chr11 79088267 79088291 -42755565 - B3A SINE B2 -7 191 170 2 1188 399 89 0 0 chr11 79088291 79088347 -42755509 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1188 540 269 81 59 chr11 79088347 79088508 -42755348 - B3A SINE B2 -29 169 2 2 1188 2622 60 87 8 chr11 79088525 79088892 -42754964 + MTA_Mm LTR MaLR 1 396 0 2 1188 43 0 0 0 chr11 79088941 79088984 -42754872 + AT_rich Low_complexity Low_complexity 1 43 0 2 1188 787 203 7 20 chr11 79089028 79089179 -42754677 + B1_Mur2 SINE Alu 1 149 0 2 1188 947 112 7 0 chr11 79089425 79089577 -42754279 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 2 1188 386 209 23 11 chr11 79089577 79089658 -42754198 - PB1D9 SINE Alu -13 107 26 2 1188 468 0 0 0 chr11 79089658 79089710 -42754146 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1188 635 172 108 8 chr11 79090086 79090215 -42753641 + B1_Mur2 SINE Alu 1 142 -7 2 1188 858 47 0 0 chr11 79090304 79090411 -42753445 + (TTTCC)n Simple_repeat Simple_repeat 3 109 0 2 1188 803 78 0 8 chr11 79090415 79090532 -42753324 + (TTC)n Simple_repeat Simple_repeat 1 116 0 2 1188 555 281 16 0 chr11 79090537 79090658 -42753198 - ID_B1 SINE B4 -20 204 82 2 1188 28 0 0 0 chr11 79091022 79091050 -42752806 + AT_rich Low_complexity Low_complexity 1 28 0 2 1188 180 200 0 0 chr11 79091065 79091120 -42752736 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1188 1193 176 17 22 chr11 79091125 79091389 -42752467 - MTD LTR MaLR -14 405 132 2 1188 478 200 11 0 chr11 79091420 79091515 -42752341 + PB1D9 SINE Alu 24 119 -1 2 1188 22 35 0 0 chr11 79091520 79091549 -42752307 + AT_rich Low_complexity Low_complexity 1 29 0 2 1188 649 203 8 0 chr11 79091551 79091669 -42752187 + B3A SINE B2 2 120 -78 2 1188 547 241 76 0 chr11 79091693 79091838 -42752018 + ID_B1 SINE B4 66 221 -3 2 1188 616 204 60 8 chr11 79092568 79092701 -42751155 + B1_Mur1 SINE Alu 9 148 -1 2 1188 593 191 55 0 chr11 79092791 79092901 -42750955 + PB1D10 SINE Alu 1 116 -1 2 1188 423 0 0 0 chr11 79092948 79092995 -42750861 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2 1188 879 161 7 0 chr11 79092995 79093132 -42750724 - B1_Mur3 SINE Alu -10 139 2 2 1188 518 175 105 0 chr11 79093189 79093303 -42750553 - B3 SINE B2 0 216 91 2 1188 467 254 26 17 chr11 79093305 79093421 -42750435 - PB1D10 SINE Alu 0 117 1 2 1188 366 250 42 25 chr11 79093514 79093633 -42750223 - MER3 DNA MER1_type -50 159 39 2 1188 386 302 23 8 chr11 79093941 79094071 -42749785 - B1F SINE Alu -13 136 5 2 1188 310 282 38 28 chr11 79094199 79094305 -42749551 - PB1D7 SINE Alu -1 119 13 2 1188 703 138 14 0 chr11 79094360 79094498 -42749358 + CT-rich Low_complexity Low_complexity 2 141 0 2 1188 212 163 0 0 chr11 79094507 79094550 -42749306 + T-rich Low_complexity Low_complexity 2 44 0 2 1188 1191 74 0 0 chr11 79094550 79094698 -42749158 - B1_Mus1 SINE Alu 0 148 1 2 1188 258 290 60 0 chr11 79095528 79095628 -42748228 + B4 SINE B4 15 120 -172 2 1188 835 231 172 22 chr11 79095636 79095869 -42747987 + B4A SINE B4 2 269 -23 2 1188 432 0 0 0 chr11 79095870 79095918 -42747938 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1188 326 183 17 0 chr11 79095918 79095978 -42747878 + ID_B1 SINE B4 145 205 -19 2 1188 636 255 41 0 chr11 79096236 79096381 -42747475 - B3 SINE B2 -7 209 59 2 1188 438 220 0 0 chr11 79096446 79096546 -42747310 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 1188 733 206 157 31 chr11 79096558 79096749 -42747107 + B3 SINE B2 1 215 -1 2 1188 1143 88 0 0 chr11 79096766 79096913 -42746943 + B1_Mus1 SINE Alu 2 148 0 3 1188 692 226 0 0 chr11 79096948 79097072 -42746784 + B1_Mur4 SINE Alu 2 125 -25 3 1188 1150 75 7 0 chr11 79097072 79097218 -42746638 + B1_Mm SINE Alu 1 147 0 3 1188 226 62 0 0 chr11 79097235 79097267 -42746589 + B1_Mur4 SINE Alu 113 144 -6 3 1188 3148 111 118 90 chr11 79097316 79097604 -42746252 + RMER6A LTR ERVK 1 323 -433 3 1188 1414 99 0 10 chr11 79097604 79097798 -42746058 + B2_Mm2 SINE B2 1 192 -3 3 1188 3148 111 118 90 chr11 79097798 79098219 -42745637 + RMER6A LTR ERVK 324 730 -26 3 1188 342 253 36 0 chr11 79098273 79098356 -42745500 + B3 SINE B2 3 88 -128 3 1188 588 222 52 0 chr11 79098402 79098537 -42745319 + B3 SINE B2 75 216 0 3 1188 637 251 43 38 chr11 79098556 79098767 -42745089 + L1M3 LINE L1 5435 5646 -534 3 1188 689 258 50 50 chr11 79098819 79098989 -42744867 + L1MB7 LINE L1 5740 5911 -273 3 1188 1984 141 19 78 chr11 79098989 79099344 -42744512 + RMER10B LTR ERVL 1 333 -65 3 1188 258 32 0 0 chr11 79099344 79099375 -42744481 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1188 1984 141 19 78 chr11 79099375 79099442 -42744414 + RMER10B LTR ERVL 334 398 0 3 1188 689 258 50 50 chr11 79099442 79099549 -42744307 + L1MB7 LINE L1 5912 6017 -167 3 1188 298 242 198 0 chr11 79099560 79099651 -42744205 - PB1D7 SINE Alu -6 114 6 3 1188 222 105 0 0 chr11 79100405 79100443 -42743413 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1188 1199 54 0 13 chr11 79100444 79100593 -42743263 - B1_Mus2 SINE Alu 0 147 1 3 1188 334 241 0 46 chr11 79100712 79100799 -42743057 + ID4_ SINE ID 1 83 0 3 1188 327 311 0 96 chr11 79102395 79102416 -42741440 + B4A SINE B4 73 80 -212 3 1188 603 188 0 67 chr11 79102416 79102536 -42741320 + B1_Mur4 SINE Alu 1 112 -38 3 1188 825 228 56 0 chr11 79102564 79102744 -42741112 + B3 SINE B2 27 216 0 3 1188 218 29 0 56 chr11 79103876 79103912 -42739944 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 3 1188 2105 120 15 18 chr11 79104364 79104694 -42739162 + ORR1A4 LTR MaLR 1 329 0 3 1188 853 174 108 159 chr11 79104695 79105065 -42738791 + RMER10B LTR ERVL 48 398 0 3 1188 285 29 0 0 chr11 79105733 79105767 -42738089 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1188 1343 67 0 22 chr11 79106130 79106312 -42737544 + B2_Mm2 SINE B2 1 178 -17 3 1188 1464 64 11 0 chr11 79106815 79107002 -42736854 + B2_Mm1t SINE B2 1 189 -4 3 1188 1189 75 0 0 chr11 79107027 79107174 -42736682 - B1_Mus1 SINE Alu 0 148 2 3 1188 374 305 21 5 chr11 79107209 79107319 -42736537 - PB1D10 SINE Alu -6 121 1 3 1188 829 167 314 4 chr11 79107667 79107924 -42735932 - MTC LTR MaLR -1 420 84 3 1188 482 226 61 13 chr11 79107924 79108056 -42735800 - PB1D9 SINE Alu -18 130 7 3 1188 321 89 0 0 chr11 79108082 79108127 -42735729 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1188 1214 55 0 0 chr11 79108127 79108273 -42735583 - B1_Mus2 SINE Alu 0 147 2 3 1188 402 94 0 0 chr11 79108450 79108514 -42735342 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1188 213 219 0 0 chr11 79108542 79108583 -42735273 - B1F SINE Alu -98 51 11 3 1188 922 183 0 30 chr11 79108621 79108790 -42735066 - B3 SINE B2 -6 210 47 3 1188 216 184 0 0 chr11 79108900 79108949 -42734907 + T-rich Low_complexity Low_complexity 1 49 0 3 1188 1174 55 0 7 chr11 79108950 79109098 -42734758 - B1_Mm SINE Alu 0 147 1 3 1188 291 352 28 9 chr11 79109098 79109207 -42734649 - B1F1 SINE Alu -30 119 9 3 1188 467 177 24 0 chr11 79109324 79109416 -42734440 + B3A SINE B2 1 104 -112 3 1188 647 135 27 0 chr11 79109416 79109527 -42734329 + B1_Mur2 SINE Alu 36 149 0 3 1188 347 196 28 52 chr11 79109530 79109638 -42734218 + PB1D7 SINE Alu 11 112 -8 3 1188 216 0 0 0 chr11 79109945 79109969 -42733887 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1188 487 236 75 151 chr11 79110054 79110126 -42733730 - ID_B1 SINE B4 -3 221 152 3 1188 1248 34 7 0 chr11 79110126 79110272 -42733584 + B1_Mus2 SINE Alu 1 147 0 3 1188 487 236 75 151 chr11 79110272 79110438 -42733418 - ID_B1 SINE B4 -73 151 1 3 1188 294 73 0 0 chr11 79110598 79110639 -42733217 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1188 211 230 11 11 chr11 79110643 79110731 -42733125 + GA-rich Low_complexity Low_complexity 2 89 0 3 1188 262 250 49 12 chr11 79110770 79110851 -42733005 - RCHARR1 DNA MER1_type -227 747 664 3 1188 191 128 21 0 chr11 79110925 79110952 -42732904 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 3 1188 1228 82 52 47 chr11 79110952 79111143 -42732713 - B2_Mm2 SINE B2 -1 194 3 3 1188 191 128 21 0 chr11 79111143 79111162 -42732694 + (TTTTTG)n Simple_repeat Simple_repeat 3 21 0 3 1188 809 209 0 0 chr11 79111163 79111311 -42732545 - B1_Mur3 SINE Alu 0 149 2 3 1188 29 0 0 0 chr11 79111414 79111443 -42732413 + AT_rich Low_complexity Low_complexity 1 29 0 3 1188 801 50 34 0 chr11 79111469 79111588 -42732268 - B1_Mm SINE Alu 0 147 25 3 1188 1342 86 11 0 chr11 79111588 79111774 -42732082 - B2_Mm1t SINE B2 -5 188 1 3 1188 566 294 92 6 chr11 79111821 79111985 -42731871 - B3A SINE B2 -18 180 3 3 1188 375 165 49 25 chr11 79112450 79112531 -42731325 - ID2 SINE ID 0 83 1 3 1188 486 270 17 0 chr11 79112664 79112779 -42731077 + B1_Mur1 SINE Alu 24 140 -9 3 1188 225 0 0 0 chr11 79112809 79112834 -42731022 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1188 537 115 0 0 chr11 79112834 79112930 -42730926 + (GA)n Simple_repeat Simple_repeat 2 97 0 3 1188 219 88 0 0 chr11 79113098 79113132 -42730724 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1188 428 278 8 65 chr11 79113147 79113185 -42730671 - RSINE1 SINE B4 -35 130 93 3 1188 1345 82 28 0 chr11 79113185 79113367 -42730489 + B2_Mm2 SINE B2 1 187 -8 3 1188 428 278 8 65 chr11 79113367 79113451 -42730405 - RSINE1 SINE B4 -73 92 15 3 1188 470 248 7 0 chr11 79113457 79113598 -42730258 + CT-rich Low_complexity Low_complexity 1 142 0 3 1188 360 0 0 0 chr11 79114035 79114075 -42729781 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1188 260 258 106 0 chr11 79114181 79114247 -42729609 - ID_B1 SINE B4 -72 152 80 3 1188 549 293 21 21 chr11 79114250 79114393 -42729463 - ID_B1 SINE B4 -1 223 81 3 1188 884 34 0 0 chr11 79114454 79114561 -42729295 + B2_Mm2 SINE B2 45 152 -41 3 1188 333 0 0 0 chr11 79114561 79114598 -42729258 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1188 775 160 8 8 chr11 79114598 79114622 -42729234 + B2_Mm1t SINE B2 153 177 -16 3 1188 184 326 0 92 chr11 79114746 79114844 -42729012 - MIRc SINE MIR -159 109 21 3 1188 1411 236 69 3 chr11 79115009 79115344 -42728512 + ORR1D2 LTR MaLR 3 359 -11 3 1188 657 174 254 6 chr11 79115989 79116162 -42727694 - B3 SINE B2 0 216 1 3 1188 633 267 92 0 chr11 79116527 79116722 -42727134 + B3 SINE B2 2 214 -2 3 1188 415 287 9 9 chr11 79117034 79117150 -42726706 + PB1 SINE Alu 1 116 -11 3 1188 293 0 27 0 chr11 79117280 79117317 -42726539 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 3 1188 795 204 89 47 chr11 79117696 79117829 -42726027 - ORR1C2 LTR MaLR -1 383 235 3 1188 411 21 0 0 chr11 79117829 79117877 -42725979 + (CAGG)n Simple_repeat Simple_repeat 3 50 0 3 1188 795 204 89 47 chr11 79117877 79117979 -42725877 - ORR1C2 LTR MaLR -150 234 138 3 1188 1181 49 7 0 chr11 79117980 79118124 -42725732 + B1_Mus2 SINE Alu 2 146 -1 3 1188 316 104 30 0 chr11 79118125 79118192 -42725664 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 3 1188 458 138 139 136 chr11 79118192 79118363 -42725493 - ORR1D1 LTR MaLR -168 191 1 3 1188 192 340 83 19 chr11 79118364 79118472 -42725384 + MIR SINE MIR 19 133 -129 3 1188 258 143 0 0 chr11 79118472 79118521 -42725335 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 3 1188 420 84 128 0 chr11 79118659 79118750 -42725106 - B1_Mur3 SINE Alu -19 130 6 3 1188 589 302 50 0 chr11 79118882 79119061 -42724795 + MLT1F LTR MaLR 103 290 -258 3 1188 217 307 52 17 chr11 79119340 79119456 -42724400 - L3 LINE CR1 -186 4303 4184 3 1188 316 253 0 75 chr11 79119792 79119886 -42723970 - BC1_Mm scRNA scRNA -51 101 15 3 1188 322 291 0 48 chr11 79119909 79119992 -42723864 - PB1D10 SINE Alu -3 114 36 3 1188 304 162 0 36 chr11 79120032 79120115 -42723741 + CT-rich Low_complexity Low_complexity 3 82 0 3 1188 479 336 142 12 chr11 79121120 79121373 -42722483 - L2b LINE L2 0 3375 3090 3 1188 303 295 117 65 chr11 79121386 79121600 -42722256 - MIRb SINE MIR -17 251 27 3 1188 241 224 20 0 chr11 79121606 79121655 -42722201 - MER91C DNA Tip100 0 140 91 3 1188 491 0 17 0 chr11 79122288 79122347 -42721509 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1188 243 125 0 0 chr11 79122441 79122481 -42721375 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1188 339 291 140 66 chr11 79122510 79122759 -42721097 + RSINE1 SINE B4 1 269 -23 3 1188 225 119 0 0 chr11 79122759 79122801 -42721055 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1188 304 291 140 66 chr11 79122801 79122823 -42721033 + B4A SINE B4 270 291 -1 3 1188 325 248 118 45 chr11 79122845 79122955 -42720901 + B1F SINE Alu 9 126 -23 3 1188 461 225 44 18 chr11 79123017 79123130 -42720726 + B1F SINE Alu 34 149 0 3 1188 206 273 0 0 chr11 79123593 79123637 -42720219 + C-rich Low_complexity Low_complexity 1 44 0 3 1188 239 254 30 0 chr11 79123641 79123708 -42720148 - ID4 SINE ID -13 70 2 3 1188 496 200 57 80 chr11 79123752 79123931 -42719925 - B3A SINE B2 0 216 46 3 1188 297 321 110 0 chr11 79124088 79124234 -42719622 + MIRb SINE MIR 18 182 -86 3 1188 553 256 38 0 chr11 79124271 79124404 -42719452 + B1_Mur1 SINE Alu 2 139 -10 3 1188 225 0 0 0 chr11 79125043 79125068 -42718788 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1188 290 87 0 8 chr11 79125084 79125135 -42718721 - B2_Mm2 SINE B2 -107 109 61 4 1188 1212 48 0 7 chr11 79125152 79125298 -42718558 - B1_Mm SINE Alu 0 147 3 4 1188 1186 71 77 6 chr11 79125373 79125542 -42718314 - B2_Mm2 SINE B2 -14 181 1 4 1188 1117 269 14 3 chr11 79126130 79126335 -42717521 - B4A SINE B4 -4 288 84 4 1188 234 0 0 0 chr11 79126335 79126361 -42717495 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1188 1117 269 14 3 chr11 79126361 79126438 -42717418 - B4A SINE B4 -209 83 3 4 1188 799 223 0 7 chr11 79126478 79126627 -42717229 - RSINE1 SINE B4 -2 163 16 4 1188 1623 32 0 11 chr11 79126643 79126831 -42717025 - B2_Mm1a SINE B2 -6 187 2 4 1188 281 281 122 26 chr11 79126834 79127005 -42716851 - B3A SINE B2 -1 194 2 4 1188 1157 68 7 0 chr11 79127033 79127180 -42716676 - B1_Mus1 SINE Alu 0 148 1 4 1188 355 319 28 0 chr11 79127271 79127412 -42716444 + B1F1 SINE Alu 5 149 0 4 1188 346 278 10 30 chr11 79127513 79127613 -42716243 + ID_B1 SINE B4 75 172 -52 4 1188 560 202 18 18 chr11 79127524 79127629 -42716227 + PB1D9 SINE Alu 5 111 -9 4 1188 288 0 0 0 chr11 79127629 79127661 -42716195 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 4 1188 222 37 0 0 chr11 79127671 79127698 -42716158 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1188 487 179 0 35 chr11 79127715 79127802 -42716054 - B3 SINE B2 -7 209 126 4 1188 1200 75 0 0 chr11 79127962 79128108 -42715748 - B1_Mus1 SINE Alu -2 146 1 4 1188 315 0 0 0 chr11 79128110 79128145 -42715711 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1188 1135 112 43 43 chr11 79128297 79128483 -42715373 + B2_Mm2 SINE B2 3 188 -7 4 1188 248 0 31 0 chr11 79128491 79128523 -42715333 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1188 273 29 0 0 chr11 79128523 79128556 -42715300 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1188 252 0 0 0 chr11 79128556 79128583 -42715273 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1188 667 262 19 0 chr11 79128749 79128909 -42714947 + RSINE1 SINE B4 3 165 0 4 1188 297 0 0 0 chr11 79128940 79128973 -42714883 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1188 253 310 53 45 chr11 79129175 79129307 -42714549 - MLT1J1 LTR MaLR -239 205 73 4 1188 738 305 35 85 chr11 79130093 79130469 -42713387 + ORR1E LTR MaLR 1 357 -2 4 1188 209 273 36 0 chr11 79130470 79130525 -42713331 - MIR SINE MIR -178 84 28 4 1188 418 290 98 35 chr11 79130708 79130851 -42713005 - B4A SINE B4 0 292 141 4 1188 312 235 87 94 chr11 79131585 79131712 -42712144 - B4 SINE B4 -3 289 164 4 1188 659 226 53 29 chr11 79131829 79132025 -42711831 + B3A SINE B2 1 195 0 4 1188 808 156 21 28 chr11 79132825 79132970 -42710886 + B1_Mur1 SINE Alu 3 146 -3 4 1188 697 199 251 29 chr11 79133671 79133842 -42710014 + B3 SINE B2 1 209 -7 4 1188 928 274 217 11 chr11 79134128 79134497 -42709359 + MLT1D LTR MaLR 58 502 -3 4 1188 2017 158 51 40 chr11 79134760 79135135 -42708721 - RLTR14 LTR ERV1 -1 381 3 4 1188 734 227 0 7 chr11 79135164 79135306 -42708550 + B1_Mur1 SINE Alu 2 142 -7 4 1188 279 0 0 0 chr11 79135601 79135632 -42708224 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4 1188 689 185 30 8 chr11 79135632 79135763 -42708093 - B1_Mus2 SINE Alu -13 134 1 4 1188 347 318 11 22 chr11 79135793 79135909 -42707947 - B1_Mur3 SINE Alu -1 119 8 4 1188 270 0 0 0 chr11 79135927 79135957 -42707899 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1188 298 193 18 0 chr11 79135958 79136015 -42707841 - B3A SINE B2 -47 151 94 4 1188 234 128 0 0 chr11 79136015 79136054 -42707802 + (TATG)n Simple_repeat Simple_repeat 4 42 0 4 1188 498 226 66 7 chr11 79136056 79136198 -42707658 - B3 SINE B2 -51 165 1 4 1188 899 171 111 30 chr11 79136215 79136414 -42707442 - B3 SINE B2 0 216 2 4 1188 189 107 0 0 chr11 79136416 79136444 -42707412 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1188 675 222 34 20 chr11 79136895 79137042 -42706814 + B3 SINE B2 54 202 -14 4 1188 342 67 0 0 chr11 79137085 79137130 -42706726 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1188 227 301 84 0 chr11 79138243 79138326 -42705530 - ID_B1 SINE B4 -99 125 36 4 1188 1465 63 11 0 chr11 79138710 79138899 -42704957 - B2_Mm1t SINE B2 -1 192 2 4 1188 949 42 8 0 chr11 79138935 79139053 -42704803 + B1_Mus2 SINE Alu 29 147 0 4 1188 362 316 89 62 chr11 79139155 79139334 -42704522 - MIR SINE MIR -38 224 41 4 1188 523 297 0 0 chr11 79139522 79139640 -42704216 - B1_Mur1 SINE Alu -29 120 3 4 1188 21 0 0 0 chr11 79139645 79139666 -42704190 + AT_rich Low_complexity Low_complexity 1 21 0 4 1188 551 230 80 75 chr11 79139701 79139724 -42704132 - B3 SINE B2 0 216 193 4 1188 748 213 0 21 chr11 79139724 79139843 -42704013 - B1_Mur3 SINE Alu -8 141 25 4 1188 1375 65 49 0 chr11 79139843 79140027 -42703829 + B2_Mm2 SINE B2 3 195 0 4 1188 748 213 0 21 chr11 79140027 79140051 -42703805 - B1_Mur3 SINE Alu -125 24 1 4 1188 640 211 79 49 chr11 79140051 79140215 -42703641 - B3A SINE B2 -2 196 28 4 1188 1541 63 5 0 chr11 79140217 79140408 -42703448 - B2_Mm1a SINE B2 0 193 2 4 1188 531 147 407 0 chr11 79140434 79140584 -42703272 - B3 SINE B2 -5 211 1 4 1188 291 28 0 0 chr11 79141075 79141111 -42702745 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1188 610 259 129 0 chr11 79141115 79141285 -42702571 - B4A SINE B4 -12 280 89 4 1188 264 59 0 0 chr11 79141293 79141327 -42702529 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4 1188 1198 68 0 0 chr11 79141335 79141482 -42702374 - B1_Mm SINE Alu 0 147 1 4 1188 2067 176 46 29 chr11 79141509 79141919 -42701937 + MTD LTR MaLR 1 412 -7 4 1188 218 0 95 0 chr11 79142066 79142108 -42701748 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1188 1230 55 0 0 chr11 79142108 79142253 -42701603 - B1_Mus2 SINE Alu -2 145 1 4 1188 1084 99 69 37 chr11 79142256 79142293 -42701563 - B2_Mm2 SINE B2 -1 194 156 4 1188 288 0 0 0 chr11 79142293 79142325 -42701531 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 1188 1084 99 69 37 chr11 79142325 79142475 -42701381 - B2_Mm2 SINE B2 -40 155 1 4 1188 258 301 164 0 chr11 79142479 79142552 -42701304 - B4A SINE B4 -207 85 1 4 1188 229 189 0 0 chr11 79142552 79142587 -42701269 - B1_Mus2 SINE Alu -36 111 77 4 1188 683 210 14 42 chr11 79143037 79143181 -42700675 - B1_Mur1 SINE Alu -8 141 2 4 1188 329 309 49 0 chr11 79143183 79143276 -42700580 + L1MD LINE L1 3083 3177 -2969 4 1188 550 213 293 0 chr11 79143276 79143440 -42700416 + B3 SINE B2 1 212 -4 4 1188 329 309 49 0 chr11 79143440 79143469 -42700387 + L1MD LINE L1 3178 3210 -2936 4 1188 189 94 0 0 chr11 79143470 79143502 -42700354 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1188 422 30 162 29 chr11 79143503 79143571 -42700285 - B1_Mur4 SINE Alu -1 149 73 4 1188 995 197 32 11 chr11 79143576 79143766 -42700090 + B3 SINE B2 23 216 0 4 1188 430 171 227 0 chr11 79144749 79144837 -42699019 + B3 SINE B2 1 108 -108 4 1188 351 261 10 71 chr11 79146328 79146427 -42697429 + PB1 SINE Alu 33 125 -2 4 1188 517 278 22 8 chr11 79146994 79147128 -42696728 - B1F SINE Alu -1 148 13 4 1188 225 308 51 13 chr11 79147255 79147334 -42696522 + ID4_ SINE ID 2 83 0 4 1188 548 283 22 0 chr11 79147767 79147905 -42695951 - ID_B1 SINE B4 0 224 84 4 1188 319 302 56 72 chr11 79147953 79148078 -42695778 - HERV16-int LTR ERVL -2762 2234 2112 4 1188 288 130 0 0 chr11 79148516 79148562 -42695294 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 4 1188 235 304 76 25 chr11 79148562 79148574 -42695282 - ID_B1 SINE B4 0 224 101 4 1188 308 205 49 12 chr11 79148574 79148680 -42695176 - PB1D10 SINE Alu -18 131 20 4 1188 486 310 31 6 chr11 79148717 79148876 -42694980 - HERV16-int LTR ERVL -3886 1110 948 4 1188 213 159 0 0 chr11 79148954 79148998 -42694858 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1188 338 292 45 15 chr11 79149030 79149162 -42694694 - HERV16-int LTR ERVL -4157 839 704 4 1188 361 347 41 0 chr11 79149508 79149606 -42694250 - PB1D10 SINE Alu -2 115 14 4 1188 270 298 298 0 chr11 79149517 79149621 -42694235 - ID_B1 SINE B4 -11 213 79 4 1188 441 280 143 104 chr11 79149853 79150188 -42693668 - LTR16A LTR ERVL -70 381 34 4 1188 1131 184 24 19 chr11 79150288 79150498 -42693358 + B3 SINE B2 1 211 -5 4 1188 623 274 34 69 chr11 79150747 79150962 -42692894 + MER102c DNA MER1_type 45 240 -2188 4 1188 259 215 138 0 chr11 79151923 79151988 -42691868 - PB1D9 SINE Alu 0 120 47 4 1188 298 243 0 14 chr11 79152110 79152181 -42691675 - B1_Mur1 SINE Alu -11 138 69 4 1188 253 297 0 54 chr11 79153259 79153444 -42690412 + C-rich Low_complexity Low_complexity 4 178 0 4 1188 609 239 7 14 chr11 79154868 79155008 -42688848 + B1_Mur3 SINE Alu 1 139 -10 4 1188 1010 201 32 56 chr11 79155262 79155478 -42688378 + B3 SINE B2 1 211 -5 4 1188 1197 156 42 5 chr11 79155512 79155725 -42688131 + URR1B DNA MER1_type 1 221 -4 4 1188 390 21 0 0 chr11 79155898 79155945 -42687911 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1188 583 244 89 0 chr11 79155962 79156097 -42687759 - B3A SINE B2 -51 147 1 4 1188 409 296 72 22 chr11 79156133 79156271 -42687585 - ID_B1 SINE B4 0 224 80 4 1188 943 54 130 8 chr11 79156546 79156677 -42687179 + B1_Mus2 SINE Alu 1 147 0 4 1188 347 116 350 10 chr11 79156774 79156877 -42686979 - B2_Mm2 SINE B2 -11 184 47 4 1188 1218 131 11 0 chr11 79156893 79157069 -42686787 - B2_Mm1t SINE B2 -14 179 2 4 1188 250 304 0 0 chr11 79157205 79157261 -42686595 + B1_Mur2 SINE Alu 61 116 -33 4 1188 669 246 99 0 chr11 79157372 79157543 -42686313 - B3A SINE B2 -10 188 1 5 1188 658 185 60 23 chr11 79157796 79157929 -42685927 + B1_Mm SINE Alu 3 140 -7 5 1188 307 241 108 0 chr11 79157961 79158044 -42685812 - B3A SINE B2 -105 93 2 5 1188 572 252 14 21 chr11 79158062 79158204 -42685652 + RSINE1 SINE B4 7 147 -18 5 1188 593 243 0 54 chr11 79158320 79158468 -42685388 - B1_Mur2 SINE Alu -6 143 4 5 1188 21 0 0 0 chr11 79158727 79158748 -42685108 + AT_rich Low_complexity Low_complexity 1 21 0 5 1188 180 0 0 0 chr11 79158852 79158872 -42684984 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 5 1188 342 299 165 0 chr11 79159242 79159369 -42684487 - B1F1 SINE Alu 0 149 2 5 1188 550 167 185 0 chr11 79159585 79159693 -42684163 - B1_Mus1 SINE Alu -15 133 6 5 1188 595 158 42 50 chr11 79159721 79159841 -42684015 - B1_Mur4 SINE Alu 0 150 32 5 1188 366 171 0 0 chr11 79160272 79160342 -42683514 + (TTA)n Simple_repeat Simple_repeat 1 70 0 5 1188 482 250 162 0 chr11 79160342 79160478 -42683378 - RSINE1 SINE B4 -5 160 3 5 1188 853 228 0 0 chr11 79161265 79161414 -42682442 + B1_Mur3 SINE Alu 1 149 0 5 1188 273 213 90 108 chr11 79162017 79162164 -42681692 + MIRc SINE MIR 45 186 -82 5 1188 487 253 67 20 chr11 79162353 79162502 -42681354 - RSINE1 SINE B4 -2 163 8 5 1188 274 295 56 11 chr11 79162534 79162623 -42681233 - ID_B1 SINE B4 -52 172 80 5 1188 381 253 0 60 chr11 79162653 79162737 -42681119 - ID_B1 SINE B4 -65 159 81 5 1188 593 241 72 30 chr11 79162907 79163074 -42680782 - ID_B1 SINE B4 -49 175 2 5 1188 198 0 0 0 chr11 79163270 79163292 -42680564 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 5 1188 342 146 36 0 chr11 79163294 79163349 -42680507 - B1_Mur4 SINE Alu -5 145 89 5 1188 198 0 0 0 chr11 79163745 79163767 -42680089 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 5 1188 704 191 68 15 chr11 79163767 79163892 -42679964 - B1_Mur1 SINE Alu -7 142 10 5 1188 286 296 40 87 chr11 79163818 79163944 -42679912 - MT2B LTR ERVL -363 238 119 5 1188 180 0 0 0 chr11 79163957 79163977 -42679879 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1188 1216 48 0 0 chr11 79163977 79164124 -42679732 - B1_Mus2 SINE Alu 0 147 1 5 1188 344 203 48 22 chr11 79164169 79164305 -42679551 - B2_Mm1t SINE B2 -7 188 47 5 1188 1298 92 40 0 chr11 79164333 79164507 -42679349 - B2_Mm2 SINE B2 -14 181 1 5 1188 1275 96 6 28 chr11 79164507 79164689 -42679167 - B2_Mm2 SINE B2 -16 179 2 5 1188 320 253 27 0 chr11 79164753 79164828 -42679028 + ID4_ SINE ID 7 83 0 5 1188 601 262 55 0 chr11 79164963 79165108 -42678748 + RSINE1 SINE B4 11 163 -2 5 1188 369 252 61 0 chr11 79165171 79165270 -42678586 + PB1D10 SINE Alu 1 105 -12 5 1188 486 255 27 9 chr11 79165554 79165665 -42678191 - B1F SINE Alu -36 113 1 5 1188 1603 52 0 0 chr11 79165874 79166067 -42677789 + B2_Mm1t SINE B2 1 193 0 5 1188 189 121 0 0 chr11 79166357 79166390 -42677466 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 1188 297 0 0 0 chr11 79166424 79166457 -42677399 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1188 225 191 24 0 chr11 79166457 79166499 -42677357 - B1_Mur1 SINE Alu -9 140 98 5 1188 189 0 0 0 chr11 79166499 79166520 -42677336 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1188 240 167 24 0 chr11 79166520 79166562 -42677294 - B1_Mur1 SINE Alu -9 140 98 5 1188 333 0 0 0 chr11 79166562 79166599 -42677257 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1188 240 167 24 0 chr11 79166599 79166641 -42677215 - B1_Mur1 SINE Alu -9 140 98 5 1188 228 35 0 0 chr11 79166641 79166670 -42677186 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1188 240 167 24 0 chr11 79166670 79166712 -42677144 - B1_Mur1 SINE Alu -9 140 98 5 1188 189 0 0 0 chr11 79166712 79166733 -42677123 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1188 646 214 69 0 chr11 79166733 79166864 -42676992 - B1_Mur1 SINE Alu -9 140 1 5 1188 281 245 99 69 chr11 79166941 79167042 -42676814 + B1F2 SINE Alu 6 109 -40 5 1188 1151 69 0 0 chr11 79167063 79167208 -42676648 + B1_Mus1 SINE Alu 2 146 -2 5 1188 230 292 13 89 chr11 79167247 79167326 -42676530 + BC1_Mm scRNA scRNA 14 86 -66 5 1188 29 47 0 0 chr11 79167397 79167440 -42676416 + AT_rich Low_complexity Low_complexity 1 43 0 5 148 711 274 68 0 chr11 79167444 79167634 -42676222 + B3 SINE B2 1 203 -13 5 1189 946 227 61 75 chr11 79167853 79168148 -42675708 - B4A SINE B4 0 292 2 5 1189 216 182 86 52 chr11 79168270 79168328 -42675528 + MIRc SINE MIR 177 236 -32 5 1189 787 205 0 0 chr11 79168353 79168480 -42675376 + B1_Mur2 SINE Alu 1 127 -22 5 1189 280 0 24 24 chr11 79168970 79169011 -42674845 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 1189 1240 27 7 0 chr11 79169619 79169765 -42674091 + B1_Mus2 SINE Alu 1 147 0 5 1189 273 316 25 32 chr11 79169776 79169933 -42673923 + L1MEg2 LINE L1 792 947 -5505 5 1189 694 261 91 35 chr11 79170087 79170286 -42673570 + B3 SINE B2 1 210 -6 5 1189 544 194 48 16 chr11 79170554 79170673 -42673183 + B4A SINE B4 119 241 -51 5 1189 319 338 25 69 chr11 79170673 79170832 -42673024 + B4A SINE B4 1 152 -140 5 1189 717 204 0 0 chr11 79170964 79171236 -42672620 + (TAGTG)n Simple_repeat Simple_repeat 1 272 0 5 1189 404 265 89 65 chr11 79171401 79171615 -42672241 + MER20 DNA MER1_type 1 219 0 5 1189 1088 68 0 40 chr11 79172177 79172329 -42671527 + B1_Mus2 SINE Alu 2 147 0 5 1189 180 0 0 0 chr11 79172329 79172349 -42671507 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1189 320 216 190 30 chr11 79172429 79172529 -42671327 + PB1D10 SINE Alu 1 116 -1 5 1189 1327 160 51 77 chr11 79172662 79172762 -42671094 - RCHARR1 DNA MER1_type -87 887 798 5 1189 894 195 26 71 chr11 79172762 79172988 -42670868 + B3 SINE B2 1 216 0 5 1189 1327 160 51 77 chr11 79172988 79173238 -42670618 - RCHARR1 DNA MER1_type -177 797 546 5 1189 447 167 0 0 chr11 79173247 79173337 -42670519 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1189 794 293 100 12 chr11 79173364 79173613 -42670243 - B4A SINE B4 -20 272 2 5 1189 1352 210 134 0 chr11 79173613 79173918 -42669938 - RCHARR1 DNA MER1_type -475 499 154 5 1189 840 128 0 0 chr11 79174080 79174213 -42669643 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 5 1189 1130 64 0 0 chr11 79174213 79174354 -42669502 - B1_Mus1 SINE Alu -7 141 1 5 1189 878 241 27 16 chr11 79174475 79174661 -42669195 - B3 SINE B2 -28 188 1 5 1189 518 262 28 14 chr11 79175198 79175341 -42668515 - RSINE1 SINE B4 -18 147 3 5 1189 256 349 71 19 chr11 79175877 79176032 -42667824 - L2 LINE L2 -516 2903 2741 5 1189 474 100 0 12 chr11 79176345 79176426 -42667430 + L1Md_F2 LINE L1 6502 6581 -1 5 1189 326 282 0 14 chr11 79176468 79176540 -42667316 - B4 SINE B4 0 292 222 5 1189 393 243 79 53 chr11 79176589 79176630 -42667226 - Lx8 LINE L1 -100 7373 7337 5 1189 243 0 0 0 chr11 79176630 79176657 -42667199 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 5 1189 393 243 79 53 chr11 79176657 79176767 -42667089 - Lx8 LINE L1 -137 7336 7218 5 1189 194 0 0 37 chr11 79176804 79176831 -42667025 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1189 2027 145 96 8 chr11 79176833 79177208 -42666648 + MTD LTR MaLR 12 419 0 5 1189 429 298 69 60 chr11 79177208 79177424 -42666432 - B4 SINE B4 -67 225 8 5 1189 818 152 229 6 chr11 79177565 79177744 -42666112 + URR1B DNA MER1_type 7 225 0 5 1189 317 109 0 18 chr11 79177898 79177954 -42665902 + (CAGG)n Simple_repeat Simple_repeat 2 56 0 5 1189 417 39 0 0 chr11 79177962 79178013 -42665843 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1189 258 327 87 17 chr11 79178035 79178150 -42665706 - ID_B1 SINE B4 -9 215 93 5 1189 226 0 0 56 chr11 79178402 79178438 -42665418 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 5 1189 848 137 0 35 chr11 79178879 79179023 -42664833 - B1_Mus2 SINE Alu -1 146 8 5 1189 391 292 58 116 chr11 79179023 79179068 -42664788 - B4 SINE B4 -66 225 48 5 1189 222 288 50 17 chr11 79179075 79179135 -42664721 - B1F SINE Alu -69 80 19 5 1189 1166 75 0 0 chr11 79179662 79179808 -42664048 + B1_Mus1 SINE Alu 3 148 0 5 1189 242 340 67 19 chr11 79180023 79180128 -42663728 - PB1D10 SINE Alu -7 110 1 5 1189 445 301 97 13 chr11 79180128 79180199 -42663657 - B4A SINE B4 -207 85 2 5 1189 343 286 87 8 chr11 79180428 79180555 -42663301 - MLT1A1 LTR MaLR -52 356 220 5 1189 249 312 12 59 chr11 79180566 79180651 -42663205 - ID4_ SINE ID -1 82 2 5 1189 392 269 90 23 chr11 79180662 79180795 -42663061 - B1F SINE Alu -3 146 5 5 1189 1442 280 57 25 chr11 79180940 79181376 -42662480 - MLT-int LTR MaLR -87 1648 1199 5 1189 1612 300 59 123 chr11 79181413 79182245 -42661611 - MLT-int LTR MaLR -956 779 1 5 1189 282 306 20 39 chr11 79182430 79182532 -42661324 - PB1D7 SINE Alu -6 114 12 5 1189 1019 141 0 48 chr11 79182816 79183002 -42660854 - B2_Mm2 SINE B2 -18 177 1 5 1189 364 248 156 6 chr11 79183462 79183585 -42660271 + ID_B1 SINE B4 82 224 0 5 1189 585 210 24 24 chr11 79183995 79184122 -42659734 - B3 SINE B2 -85 131 5 5 1189 492 310 69 6 chr11 79184119 79184294 -42659562 - MTEa LTR MaLR -193 186 1 5 1189 383 305 9 0 chr11 79184300 79184405 -42659451 - PB1D10 SINE Alu -1 116 11 5 1189 244 328 0 0 chr11 79184355 79184413 -42659443 - B4A SINE B4 -147 145 88 5 1189 21 36 0 0 chr11 79184414 79184442 -42659414 + AT_rich Low_complexity Low_complexity 1 28 0 6 1189 405 194 24 163 chr11 79185797 79185849 -42658007 + PB1D9 SINE Alu 15 59 -61 6 1189 1480 67 5 5 chr11 79185849 79186043 -42657813 - B2_Mm2 SINE B2 -1 194 1 6 1189 405 194 24 163 chr11 79186043 79186113 -42657743 + PB1D9 SINE Alu 60 120 0 6 1189 373 291 11 11 chr11 79186258 79186345 -42657511 - B1F1 SINE Alu -61 88 2 6 1189 875 182 155 0 chr11 79186424 79186605 -42657251 + B3 SINE B2 2 210 -6 6 1189 802 226 94 6 chr11 79186611 79186771 -42657085 + B3 SINE B2 1 174 -42 6 1189 282 259 0 60 chr11 79187179 79187276 -42656580 - ID4 SINE ID -53 99 8 6 1189 241 304 56 28 chr11 79187327 79187469 -42656387 - L1M5 LINE L1 -592 5648 5503 6 1189 22 56 0 0 chr11 79187571 79187607 -42656249 + AT_rich Low_complexity Low_complexity 1 36 0 6 1189 557 293 0 97 chr11 79187630 79187857 -42655999 - B3 SINE B2 -11 205 1 6 1189 751 253 10 40 chr11 79187879 79188081 -42655775 - B3A SINE B2 0 198 3 6 1189 759 201 14 0 chr11 79188208 79188347 -42655509 - B1_Mus1 SINE Alu -7 141 1 6 1189 843 254 46 85 chr11 79188375 79188741 -42655115 + Lx8 LINE L1 7121 7472 -1 6 1189 436 0 51 0 chr11 79188935 79188994 -42654862 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 6 1189 1171 56 0 0 chr11 79188997 79189139 -42654717 - B1_Mus1 SINE Alu -6 142 1 6 1189 24 53 0 0 chr11 79189145 79189183 -42654673 + AT_rich Low_complexity Low_complexity 1 38 0 6 1189 595 218 0 0 chr11 79189194 79189295 -42654561 - B3 SINE B2 -112 104 4 6 1189 274 320 115 0 chr11 79189307 79189429 -42654427 - B1F1 SINE Alu -1 148 13 6 1189 484 325 89 128 chr11 79189435 79189637 -42654219 - MLT1F LTR MaLR -48 500 278 6 1189 279 71 0 0 chr11 79189637 79189679 -42654177 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 6 1189 484 325 89 128 chr11 79189679 79189693 -42654163 - MLT1F LTR MaLR -271 277 269 6 1189 1113 128 0 0 chr11 79189693 79189873 -42653983 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 1189 484 325 89 128 chr11 79189873 79190170 -42653686 - MLT1F LTR MaLR -280 268 7 6 1189 245 237 78 97 chr11 79190359 79190462 -42653394 - B3 SINE B2 -4 212 112 6 1189 708 318 80 25 chr11 79190417 79190656 -42653200 - B4A SINE B4 -6 286 35 6 1189 353 70 54 27 chr11 79190761 79190835 -42653021 + CT-rich Low_complexity Low_complexity 3 78 0 6 1189 371 271 55 44 chr11 79190955 79191118 -42652738 - L1MEf LINE L1 -4024 2176 2031 6 1189 282 56 0 0 chr11 79191127 79191163 -42652693 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 6 1189 1018 130 19 25 chr11 79191163 79191321 -42652535 - B2_Mm2 SINE B2 -36 159 3 6 1189 418 318 68 10 chr11 79191324 79191632 -42652224 - L1MEf LINE L1 -4587 1613 1288 6 1189 376 207 57 12 chr11 79191702 79191832 -42652024 - ORR1D1 LTR MaLR 0 379 239 6 1189 928 148 0 7 chr11 79191823 79191966 -42651890 + B1_Mur4 SINE Alu 9 150 0 6 1189 706 211 262 102 chr11 79191973 79192078 -42651778 - ORR1D1 LTR MaLR -55 319 177 6 1189 486 0 0 0 chr11 79192078 79192132 -42651724 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1189 706 211 262 102 chr11 79192132 79192301 -42651555 - ORR1D1 LTR MaLR -198 176 1 6 1189 22 0 0 0 chr11 79192346 79192368 -42651488 + AT_rich Low_complexity Low_complexity 1 22 0 6 1189 322 360 57 11 chr11 79192626 79192803 -42651053 - Charlie25 DNA MER1_type -2339 185 1 6 1189 194 351 68 45 chr11 79192865 79193041 -42650815 - L2c LINE L2 0 3387 3208 6 1189 676 292 40 15 chr11 79193043 79193241 -42650615 + ID_B1 SINE B4 5 207 -17 6 1189 695 235 28 61 chr11 79193843 79194024 -42649832 + B3 SINE B2 4 178 -38 6 1189 30 0 0 0 chr11 79194025 79194055 -42649801 + AT_rich Low_complexity Low_complexity 1 30 0 6 1189 1375 70 43 0 chr11 79194591 79194776 -42649080 - B2_Mm2 SINE B2 -1 194 2 6 1189 493 265 42 42 chr11 79195715 79195857 -42647999 - MER3 DNA MER1_type -56 153 12 6 1189 1632 175 103 19 chr11 79196203 79196524 -42647332 - ORR1B1 LTR MaLR 0 394 47 6 1189 242 29 29 0 chr11 79196627 79196662 -42647194 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1189 770 167 63 0 chr11 79196665 79196791 -42647065 - B1_Mur4 SINE Alu -16 134 1 6 1189 376 278 139 46 chr11 79198919 79199070 -42644786 + RSINE1 SINE B4 1 165 0 6 1189 1689 26 0 0 chr11 79199144 79199337 -42644519 - B2_Mm1a SINE B2 0 193 1 6 1189 318 301 38 28 chr11 79199606 79199712 -42644144 - ID_B1 SINE B4 -12 212 106 6 1189 240 366 0 24 chr11 79199652 79199736 -42644120 - PB1D10 SINE Alu -34 83 2 6 1189 1172 75 0 0 chr11 79199820 79199967 -42643889 - B1_Mus2 SINE Alu 0 147 1 6 1189 721 215 106 11 chr11 79201096 79201284 -42642572 - B3 SINE B2 -8 208 3 6 1189 587 230 25 101 chr11 79201502 79201700 -42642156 - B3A SINE B2 -15 183 1 6 1189 497 333 32 39 chr11 79201715 79201871 -42641985 - RSINE1 SINE B4 -8 157 3 6 1189 1092 202 14 33 chr11 79201915 79202130 -42641726 - B3 SINE B2 -5 211 1 6 1189 221 83 28 0 chr11 79202587 79202623 -42641233 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 6 1189 231 246 209 30 chr11 79202629 79202696 -42641160 - ID4_ SINE ID 0 83 5 6 1189 1290 98 22 0 chr11 79203265 79203448 -42640408 + B2_Mm2 SINE B2 2 188 -7 6 1189 324 210 0 0 chr11 79204131 79204212 -42639644 + CT-rich Low_complexity Low_complexity 1 81 0 6 1189 398 203 27 0 chr11 79204212 79204286 -42639570 - ID4 SINE ID -5 78 3 6 1189 455 221 9 103 chr11 79204586 79204702 -42639154 + PB1D9 SINE Alu 6 110 -10 6 1189 189 0 0 0 chr11 79204720 79204741 -42639115 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 6 1189 825 216 79 44 chr11 79204913 79205116 -42638740 + B3 SINE B2 7 216 0 6 1189 245 269 153 27 chr11 79205162 79205273 -42638583 + RSINE1 SINE B4 4 128 -37 6 1189 494 141 0 0 chr11 79205890 79205968 -42637888 - B1_Mus2 SINE Alu 0 147 70 6 1189 227 325 110 23 chr11 79206229 79206277 -42637579 - Tigger10 DNA Tigger -971 872 822 6 1189 997 126 20 45 chr11 79206277 79206476 -42637380 + B2_Mm2 SINE B2 2 195 0 6 1189 227 325 110 23 chr11 79206476 79206600 -42637256 - Tigger10 DNA Tigger -1022 821 685 6 1189 504 0 0 0 chr11 79206827 79206883 -42636973 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 6 1189 617 188 29 22 chr11 79206901 79207037 -42636819 - B1_Mur4 SINE Alu -13 137 1 6 1189 384 276 92 30 chr11 79207186 79207317 -42636539 - B1F1 SINE Alu 0 149 11 6 1189 826 188 63 25 chr11 79207429 79207613 -42636243 - B3 SINE B2 0 198 2 6 1189 1056 98 52 47 chr11 79207628 79207820 -42636036 - B2_Mm1a SINE B2 0 193 1 6 1189 558 212 7 116 chr11 79208094 79208249 -42635607 - B1F2 SINE Alu -11 138 1 6 1189 264 288 0 105 chr11 79208402 79208526 -42635330 - PB1D10 SINE Alu -6 111 1 6 1189 26 50 0 0 chr11 79208573 79208613 -42635243 + AT_rich Low_complexity Low_complexity 1 40 0 6 1189 412 271 10 10 chr11 79208777 79208874 -42634982 + RSINE1 SINE B4 1 97 -68 6 1189 21 36 0 0 chr11 79209219 79209247 -42634609 + AT_rich Low_complexity Low_complexity 1 28 0 6 1189 745 139 8 8 chr11 79209611 79209734 -42634122 - B1_Mm SINE Alu 0 147 25 6 1189 262 125 54 0 chr11 79209806 79209862 -42633994 + CT-rich Low_complexity Low_complexity 2 60 0 6 1189 945 134 15 83 chr11 79209883 79210087 -42633769 - B2_Mm2 SINE B2 -3 192 3 6 1189 464 252 98 15 chr11 79210223 79210356 -42633500 + B1F SINE Alu 1 144 -5 6 1189 777 196 42 0 chr11 79210523 79210666 -42633190 + B1_Mur3 SINE Alu 1 149 0 6 1189 481 291 190 45 chr11 79210760 79211706 -42632150 + L1MA4 LINE L1 2983 4076 -2064 6 1189 614 230 71 8 chr11 79211725 79211852 -42632004 + B1_Mur1 SINE Alu 12 146 -3 6 1189 300 299 37 9 chr11 79211906 79212014 -42631842 + L1MA4 LINE L1 4115 4225 -1918 6 1189 1387 327 91 40 chr11 79212023 79212646 -42631210 + Lx8 LINE L1 6445 7087 -386 6 1189 234 0 0 0 chr11 79212646 79212672 -42631184 + (CAG)n Simple_repeat Simple_repeat 1 26 0 6 1189 1387 327 91 40 chr11 79212672 79213027 -42630829 + Lx8 LINE L1 7088 7472 -1 6 1189 946 181 119 0 chr11 79213108 79213285 -42630571 - MT2A LTR ERVL -71 462 265 6 1189 16008 194 68 22 chr11 79213285 79217662 -42626194 - MERVL_2A-int LTR ERVL -554 5207 523 6 1189 384 253 11 11 chr11 79217672 79217760 -42626096 - MT2A LTR ERVL -290 243 156 6 1189 343 67 0 0 chr11 79217766 79217811 -42626045 - MT2A LTR ERVL -488 45 1 6 1189 362 253 0 0 chr11 79217820 79217895 -42625961 + L1MA4 LINE L1 4853 4927 -1216 6 1189 510 17 0 0 chr11 79217895 79217954 -42625902 + (TTTC)n Simple_repeat Simple_repeat 4 62 0 6 1189 1278 54 0 12 chr11 79217955 79218123 -42625733 - B2_Mm2 SINE B2 -26 169 4 6 1189 2068 117 62 0 chr11 79218167 79218475 -42625381 - ORR1A2 LTR MaLR 0 327 1 6 1189 486 318 51 19 chr11 79218498 79218955 -42624901 + L1MA4 LINE L1 5011 5484 -399 6 1189 225 139 0 0 chr11 79218984 79219027 -42624829 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1189 1190 48 7 0 chr11 79219027 79219173 -42624683 - B1_Mus1 SINE Alu 0 148 2 6 1189 286 247 201 23 chr11 79219182 79219356 -42624500 + L1MA4 LINE L1 5563 5767 -533 6 1189 1247 109 0 6 chr11 79219933 79220108 -42623748 - B2_Mm2 SINE B2 -19 176 3 6 1189 324 0 0 0 chr11 79220164 79220200 -42623656 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1189 27 0 0 0 chr11 79220286 79220313 -42623543 + AT_rich Low_complexity Low_complexity 1 27 0 6 1189 318 237 14 29 chr11 79220313 79220452 -42623404 + L1MA4 LINE L1 5767 5903 -397 6 1189 252 0 0 0 chr11 79220520 79220548 -42623308 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1189 833 178 106 28 chr11 79221099 79221278 -42622578 - B3A SINE B2 -4 194 2 6 1189 515 184 35 55 chr11 79221292 79221429 -42622427 - B1_Mur3 SINE Alu 0 149 1 6 1189 585 238 157 0 chr11 79221467 79221652 -42622204 - B3 SINE B2 -2 214 1 6 1189 26 0 0 0 chr11 79221780 79221806 -42622050 + AT_rich Low_complexity Low_complexity 1 26 0 6 1189 291 179 0 51 chr11 79223602 79223661 -42620195 + B3A SINE B2 11 66 -132 6 1189 624 269 61 18 chr11 79223975 79224138 -42619718 - B3A SINE B2 -22 176 7 6 1189 24 0 0 0 chr11 79224567 79224591 -42619265 + AT_rich Low_complexity Low_complexity 1 24 0 6 1189 962 255 0 9 chr11 79225820 79226038 -42617818 - B3 SINE B2 0 216 1 6 1189 279 0 0 0 chr11 79226149 79226180 -42617676 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1189 634 212 80 0 chr11 79228034 79228171 -42615685 - B1_Mur1 SINE Alu -1 148 1 7 1189 22 0 0 0 chr11 79229297 79229319 -42614537 + AT_rich Low_complexity Low_complexity 1 22 0 7 1189 3224 48 0 17 chr11 79229345 79229748 -42614108 - MTA_Mm LTR MaLR 0 396 1 7 1189 520 242 25 13 chr11 79229807 79229927 -42613929 + B1F SINE Alu 1 110 -7 7 1189 1086 201 242 19 chr11 79230209 79230519 -42613337 + MTE2a LTR MaLR 1 379 0 7 1189 833 203 170 0 chr11 79230614 79230796 -42613060 - B3 SINE B2 -3 213 1 7 1189 354 302 47 0 chr11 79230807 79230913 -42612943 - PB1D10 SINE Alu -6 111 1 7 1189 26 30 0 0 chr11 79231227 79231260 -42612596 + AT_rich Low_complexity Low_complexity 1 33 0 7 1189 357 250 0 81 chr11 79231371 79231458 -42612398 + ID4 SINE ID 2 81 -2 7 1189 26 0 0 0 chr11 79233357 79233383 -42610473 + AT_rich Low_complexity Low_complexity 1 26 0 7 1189 29 0 0 0 chr11 79233999 79234028 -42609828 + AT_rich Low_complexity Low_complexity 1 29 0 7 1189 326 208 56 0 chr11 79234076 79234148 -42609708 - PB1D10 SINE Alu 0 117 42 7 1189 522 205 212 24 chr11 79234177 79234342 -42609514 - B3A SINE B2 -1 197 2 7 1189 260 283 17 0 chr11 79234667 79234727 -42609129 + PB1D9 SINE Alu 1 61 -59 7 1189 951 127 14 0 chr11 79234773 79234915 -42608941 - B1_Mur4 SINE Alu -6 144 1 7 1189 1398 278 37 51 chr11 79235019 79235527 -42608329 - RLTR20B3 LTR ERVK -56 521 21 7 1189 556 239 0 33 chr11 79235598 79235719 -42608137 + B3 SINE B2 2 118 -98 7 1189 186 133 0 0 chr11 79236481 79236511 -42607345 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1189 321 47 0 0 chr11 79237461 79237504 -42606352 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1189 4121 38 0 2 chr11 79237976 79238472 -42605384 + L1Md_F3 LINE L1 6090 6584 0 7 1189 191 36 0 35 chr11 79238760 79238789 -42605067 + (TTA)n Simple_repeat Simple_repeat 1 28 0 7 1189 363 262 101 27 chr11 79239719 79239868 -42603988 + MIR SINE MIR 100 259 -3 7 1189 1875 115 141 30 chr11 79239982 79240350 -42603506 - RLTR9E LTR ERVK 0 409 1 7 1189 407 319 0 89 chr11 79240542 79240700 -42603156 - B1F SINE Alu 0 149 6 7 1189 539 211 46 0 chr11 79241682 79241791 -42602065 + B1_Mus1 SINE Alu 35 148 0 7 1189 644 218 47 16 chr11 79241829 79242020 -42601836 + B3A SINE B2 1 197 -1 7 1189 29 0 0 0 chr11 79242304 79242333 -42601523 + AT_rich Low_complexity Low_complexity 1 29 0 7 1189 286 311 63 45 chr11 79242416 79242527 -42601329 - PB1 SINE Alu -3 124 12 7 1189 354 281 36 36 chr11 79242627 79242767 -42601089 - RSINE1 SINE B4 -11 154 15 7 1189 282 292 26 17 chr11 79242829 79242944 -42600912 - L1M4 LINE L1 -615 5569 5454 7 1189 535 233 0 24 chr11 79242978 79243101 -42600755 + PB1D9 SINE Alu 1 120 0 7 1189 581 287 12 31 chr11 79243122 79243284 -42600572 - RSINE1 SINE B4 -2 163 5 7 1189 3204 119 88 0 chr11 79243321 79243835 -42600021 - Lx3B LINE L1 0 6973 6415 7 1189 22 0 0 0 chr11 79243899 79243921 -42599935 + AT_rich Low_complexity Low_complexity 1 22 0 7 1189 423 216 49 15 chr11 79244277 79244452 -42599404 - L1ME3 LINE L1 -476 5883 5706 7 1189 692 176 76 8 chr11 79244455 79244587 -42599269 + B1_Mur1 SINE Alu 2 142 -7 7 1189 736 237 16 38 chr11 79244829 79245013 -42598843 - B3A SINE B2 -18 180 1 7 1189 993 41 0 0 chr11 79245023 79245145 -42598711 + (GA)n Simple_repeat Simple_repeat 1 122 0 7 1189 303 345 152 30 chr11 79245514 79245777 -42598079 + L1M5 LINE L1 5528 5822 -351 7 1189 637 203 29 7 chr11 79245780 79245919 -42597937 + B1_Mur1 SINE Alu 1 142 -7 7 1189 340 209 86 86 chr11 79245788 79245940 -42597916 + B4A SINE B4 95 246 -46 7 1189 183 156 0 0 chr11 79246037 79246069 -42597787 + (CAA)n Simple_repeat Simple_repeat 3 34 0 7 1189 316 167 75 15 chr11 79246084 79246151 -42597705 + B1_Mur2 SINE Alu 79 149 0 7 1189 486 0 0 0 chr11 79246427 79246481 -42597375 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1189 199 356 118 32 chr11 79247143 79247236 -42596620 - MIRc SINE MIR -165 103 3 7 1189 790 209 0 7 chr11 79248696 79248845 -42595011 - B1_Mur1 SINE Alu -1 148 1 7 1189 1269 87 12 0 chr11 79248868 79249040 -42594816 - B2_Mm1t SINE B2 -19 174 1 7 1189 622 232 34 114 chr11 79249446 79249709 -42594147 - MER33 DNA MER1_type -81 243 2 7 1189 333 383 58 5 chr11 79249738 79249945 -42593911 - MER58A DNA MER1_type -3 221 4 7 1189 1168 35 0 0 chr11 79250341 79250482 -42593374 - B1_Mus1 SINE Alu -7 141 1 7 1189 1463 202 164 3 chr11 79250537 79250885 -42592971 - MTD LTR MaLR -15 404 1 7 1189 394 189 321 0 chr11 79251260 79251366 -42592490 + B1F SINE Alu 1 140 -9 7 1189 25 31 0 0 chr11 79251454 79251486 -42592370 + AT_rich Low_complexity Low_complexity 1 32 0 7 1189 226 312 100 0 chr11 79252451 79252531 -42591325 + MIR SINE MIR 40 127 -135 7 1189 350 260 7 0 chr11 79252550 79252628 -42591228 + PB1D10 SINE Alu 1 81 -233 7 1189 949 189 13 54 chr11 79252758 79252982 -42590874 - B3 SINE B2 0 216 2 7 1189 340 286 24 0 chr11 79253361 79253445 -42590411 - PB1D7 SINE Alu -14 106 21 7 1189 225 227 12 85 chr11 79253372 79253454 -42590402 - ID_B1 SINE B4 -51 173 98 7 1189 253 340 113 0 chr11 79253469 79253566 -42590290 - PB1D10 SINE Alu -8 109 2 7 1189 252 0 0 0 chr11 79253920 79253948 -42589908 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1189 1073 45 0 43 chr11 79253948 79254088 -42589768 - B1_Mus2 SINE Alu -13 134 1 7 1189 503 266 21 7 chr11 79255928 79256072 -42587784 - B1F1 SINE Alu -3 146 1 7 1189 511 268 17 144 chr11 79256454 79256807 -42587049 - L1MB8 LINE L1 -21 6157 5850 7 1189 967 228 47 24 chr11 79256910 79257121 -42586735 + B3 SINE B2 1 216 0 7 1189 24 0 0 0 chr11 79257149 79257173 -42586683 + AT_rich Low_complexity Low_complexity 1 24 0 7 1189 233 274 0 0 chr11 79259328 79259379 -42584477 + GA-rich Low_complexity Low_complexity 3 53 0 7 1189 826 146 14 14 chr11 79259886 79260025 -42583831 - B1_Mus1 SINE Alu -3 145 7 7 1189 694 257 75 56 chr11 79259889 79260103 -42583753 - ID_B1 SINE B4 -6 218 1 7 1189 355 198 54 98 chr11 79261187 79261199 -42582657 + MT2B LTR ERVL 151 157 -444 7 1189 694 199 42 7 chr11 79261199 79261341 -42582515 + B1_Mur2 SINE Alu 2 148 -1 7 1189 390 229 13 52 chr11 79261392 79261545 -42582311 + B3 SINE B2 2 213 -3 7 1189 614 240 185 5 chr11 79261967 79262151 -42581705 + ID_B1 SINE B4 2 218 -6 7 1189 581 252 22 15 chr11 79262478 79262615 -42581241 + ID_B1 SINE B4 84 221 -3 7 1189 273 254 30 0 chr11 79262676 79262743 -42581113 - ID2 SINE ID -13 70 2 7 1189 465 141 10 42 chr11 79262838 79262934 -42580922 + PB1D9 SINE Alu 15 107 -13 7 1189 207 69 0 0 chr11 79262994 79263023 -42580833 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 7 1189 452 222 55 9 chr11 79263130 79263239 -42580617 + B3 SINE B2 42 155 -61 7 1189 235 349 0 0 chr11 79263288 79263371 -42580485 + B3A SINE B2 1 83 -115 7 1189 479 260 38 8 chr11 79263722 79263854 -42580002 - B1F2 SINE Alu -13 136 1 7 1189 277 329 0 0 chr11 79264023 79264105 -42579751 + ID4 SINE ID 2 83 0 7 1189 326 156 0 15 chr11 79264176 79264241 -42579615 + CT-rich Low_complexity Low_complexity 2 65 0 7 1189 861 149 7 33 chr11 79264242 79264395 -42579461 - B1_Mur3 SINE Alu 0 149 1 7 1189 414 263 73 22 chr11 79264424 79264560 -42579296 - B1_Mur1 SINE Alu -5 144 2 7 1189 909 232 28 0 chr11 79264587 79264764 -42579092 - B3 SINE B2 -5 211 30 7 1189 1507 150 0 0 chr11 79264836 79265062 -42578794 - URR1A DNA MER1_type 0 226 1 7 1189 881 108 54 0 chr11 79265083 79265249 -42578607 + CT-rich Low_complexity Low_complexity 1 175 0 7 1189 185 226 0 19 chr11 79265284 79265338 -42578518 + C-rich Low_complexity Low_complexity 2 54 0 7 1189 191 36 36 0 chr11 79265338 79265366 -42578490 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 7 1189 326 304 54 0 chr11 79266104 79266196 -42577660 - B1F1 SINE Alu -44 105 9 7 1189 661 218 45 0 chr11 79268312 79268445 -42575411 - B1_Mur2 SINE Alu -8 141 3 7 1189 231 329 39 13 chr11 79268552 79268629 -42575227 - ID4 SINE ID -2 81 3 7 1189 307 306 0 14 chr11 79268928 79269001 -42574855 - RSINE1 SINE B4 -91 74 3 7 1189 226 224 16 49 chr11 79269059 79269120 -42574736 + ID2 SINE ID 14 72 -11 7 1189 768 80 10 93 chr11 79269122 79269316 -42574540 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1189 186 43 0 0 chr11 79269317 79269340 -42574516 + (CACG)n Simple_repeat Simple_repeat 1 23 0 7 1189 598 262 52 47 chr11 79269417 79269609 -42574247 + B3A SINE B2 1 193 -5 7 1189 238 290 14 0 chr11 79269752 79269821 -42574035 + ID4 SINE ID 1 70 -13 7 1189 246 174 0 0 chr11 79269835 79269881 -42573975 + GA-rich Low_complexity Low_complexity 5 50 0 7 1189 306 276 13 0 chr11 79269986 79270062 -42573794 - ID4 SINE ID -3 80 4 7 1189 332 309 152 54 chr11 79270077 79270504 -42573352 + L1MCb LINE L1 93 561 -5484 8 1189 599 306 83 31 chr11 79271129 79271480 -42572376 - Lx8 LINE L1 -235 7238 6870 8 1189 342 143 0 0 chr11 79271679 79271742 -42572114 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 8 1189 360 269 32 65 chr11 79271878 79272001 -42571855 - ID_B1 SINE B4 -1 223 105 8 1189 265 289 102 10 chr11 79272017 79272115 -42571741 - PB1D7 SINE Alu -1 119 13 8 1189 270 0 0 0 chr11 79272138 79272168 -42571688 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 8 1189 999 226 9 0 chr11 79272513 79272725 -42571131 + B3 SINE B2 3 216 0 8 1189 252 86 0 0 chr11 79273387 79273422 -42570434 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1189 264 254 0 0 chr11 79274690 79274753 -42569103 + CT-rich Low_complexity Low_complexity 3 65 0 8 1189 610 112 69 0 chr11 79275501 79275661 -42568195 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 8 1189 242 304 80 94 chr11 79275693 79275705 -42568151 - MT2B LTR ERVL -311 290 239 8 1189 389 290 32 2 chr11 79275705 79275815 -42568041 - PB1D10 SINE Alu -3 124 1 8 1189 242 304 80 94 chr11 79275815 79275831 -42568025 - MT2B LTR ERVL -311 238 155 8 1189 23 33 0 0 chr11 79276246 79276276 -42567580 + AT_rich Low_complexity Low_complexity 1 30 0 8 1189 24 32 0 0 chr11 79277053 79277084 -42566772 + AT_rich Low_complexity Low_complexity 1 31 0 8 1189 883 131 20 33 chr11 79278801 79278951 -42564905 + B1_Mur3 SINE Alu 2 149 0 8 1189 1373 77 0 58 chr11 79279163 79279369 -42564487 - B2_Mm2 SINE B2 0 195 2 8 1189 396 235 117 36 chr11 79279595 79279732 -42564124 - B1F SINE Alu 0 149 2 8 1189 1196 85 6 0 chr11 79279935 79280100 -42563756 + B2_Mm2 SINE B2 2 167 -28 8 1189 907 199 102 5 chr11 79280745 79280932 -42562924 + B3 SINE B2 2 206 -10 8 1189 183 42 0 0 chr11 79280940 79280964 -42562892 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 8 1189 182 108 0 51 chr11 79281497 79281536 -42562320 + T-rich Low_complexity Low_complexity 4 40 0 8 1189 294 143 0 0 chr11 79282518 79282567 -42561289 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 8 1189 799 281 76 25 chr11 79282732 79283009 -42560847 + B4A SINE B4 1 291 -1 8 1189 233 295 122 26 chr11 79283808 79283923 -42559933 + MIRc SINE MIR 104 229 -39 8 1189 2470 139 82 28 chr11 79283962 79284459 -42559397 - RLTR28 LTR ERVL 0 524 1 8 1189 199 287 93 31 chr11 79284587 79284684 -42559172 + MIRc SINE MIR 41 143 -125 8 1189 526 244 38 0 chr11 79285346 79285477 -42558379 + B1_Mur1 SINE Alu 1 136 -13 8 1189 972 101 87 0 chr11 79285852 79285990 -42557866 - B1_Mur4 SINE Alu 0 150 1 8 1189 353 130 19 0 chr11 79286213 79286267 -42557589 - ORR1C2 LTR MaLR -329 55 1 8 1189 425 151 228 125 chr11 79286267 79286402 -42557454 + B3A SINE B2 38 186 -9 8 1189 516 196 0 21 chr11 79286407 79286501 -42557355 + PB1D10 SINE Alu 24 115 -2 8 1189 261 0 0 0 chr11 79286606 79286635 -42557221 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1189 578 248 51 45 chr11 79287167 79287323 -42556533 - RSINE1 SINE B4 0 165 9 8 1189 271 163 0 0 chr11 79287842 79287885 -42555971 - RLTR22_Mur LTR ERVK -661 1187 1145 8 1189 5574 119 24 87 chr11 79287886 79288943 -42554913 - RLTR22_Mur LTR ERVK -858 990 1 8 1189 333 0 0 0 chr11 79289671 79289708 -42554148 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1189 372 133 0 0 chr11 79289871 79289931 -42553925 + (TCC)n Simple_repeat Simple_repeat 1 60 0 8 1189 319 306 54 36 chr11 79290364 79290476 -42553380 + PB1D7 SINE Alu 1 114 -6 8 1189 1154 55 7 0 chr11 79290563 79290708 -42553148 - B1_Mus2 SINE Alu 0 147 2 8 1189 380 227 22 48 chr11 79291224 79291329 -42552527 - PB1D10 SINE Alu 0 149 30 8 1189 553 251 176 21 chr11 79291329 79291516 -42552340 - B3 SINE B2 0 216 1 8 1189 267 282 92 71 chr11 79291516 79291551 -42552305 - B1F2 SINE Alu -108 41 7 8 1189 25 0 0 0 chr11 79292256 79292281 -42551575 + AT_rich Low_complexity Low_complexity 1 25 0 8 1189 212 288 17 0 chr11 79292281 79292340 -42551516 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 8 1189 300 379 9 0 chr11 79292454 79292570 -42551286 - MLT1K LTR MaLR -346 249 133 8 1189 396 0 0 0 chr11 79292606 79292650 -42551206 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1189 22 0 0 0 chr11 79292801 79292823 -42551033 + AT_rich Low_complexity Low_complexity 1 22 0 8 1189 5549 167 56 8 chr11 79293013 79294035 -42549821 - Lx5 LINE L1 -2 7048 5978 8 1189 1262 112 21 0 chr11 79294182 79294369 -42549487 - B2_Mm1t SINE B2 -1 192 2 8 1189 599 198 26 26 chr11 79294486 79294600 -42549256 + B1_Mur2 SINE Alu 23 136 -13 8 1189 281 330 0 11 chr11 79294600 79294692 -42549164 + GA-rich Low_complexity Low_complexity 4 94 0 8 1189 308 185 31 0 chr11 79294712 79294777 -42549079 + Tigger16b DNA Tigger 236 302 -35 8 1189 29 0 0 0 chr11 79294945 79294974 -42548882 + AT_rich Low_complexity Low_complexity 1 29 0 8 1189 549 93 0 0 chr11 79295221 79295296 -42548560 + BC1_Mm scRNA scRNA 3 77 -75 8 1189 23 0 0 0 chr11 79295360 79295383 -42548473 + AT_rich Low_complexity Low_complexity 1 23 0 8 1189 214 167 0 0 chr11 79295716 79295758 -42548098 + (TGG)n Simple_repeat Simple_repeat 2 43 0 8 1189 225 154 0 0 chr11 79295799 79295838 -42548018 + (TTG)n Simple_repeat Simple_repeat 1 39 0 8 1189 340 212 91 0 chr11 79297955 79298054 -42545802 - PB1D10 SINE Alu -9 108 1 8 1190 620 226 7 68 chr11 79300041 79300188 -42543668 + B1_Mur1 SINE Alu 5 142 -7 8 1190 646 239 97 56 chr11 79300205 79300400 -42543456 + B3 SINE B2 13 215 -1 8 1190 706 245 107 0 chr11 79300471 79300630 -42543226 - B3A SINE B2 -22 176 1 8 1190 370 367 14 0 chr11 79300704 79300843 -42543013 - B1F2 SINE Alu -8 141 1 8 1190 487 304 108 2 chr11 79300961 79301141 -42542715 - B3A SINE B2 -14 202 5 8 1190 239 306 50 20 chr11 79301335 79301368 -42542488 + B1F2 SINE Alu 47 149 0 8 1190 299 231 0 30 chr11 79301368 79301435 -42542421 + ID_B1 SINE B4 158 222 -2 8 1190 707 199 7 52 chr11 79302410 79302564 -42541292 + B1_Mur1 SINE Alu 2 148 -1 8 1190 508 210 156 20 chr11 79302854 79303053 -42540803 + URR1A DNA MER1_type 1 226 0 8 1190 180 135 0 0 chr11 79303496 79303533 -42540323 + (TTTTTA)n Simple_repeat Simple_repeat 4 40 0 8 1190 271 205 114 30 chr11 79303544 79303710 -42540146 - RMER17C LTR ERVK -138 272 93 8 1190 739 277 102 19 chr11 79303710 79303926 -42539930 - L1MB8 LINE L1 -109 6075 5836 8 1190 354 80 0 0 chr11 79303926 79303976 -42539880 + (TA)n Simple_repeat Simple_repeat 2 51 0 8 1190 312 91 0 0 chr11 79303977 79304021 -42539835 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1190 739 287 103 19 chr11 79304021 79304350 -42539506 - L1MB8 LINE L1 -349 5835 5480 8 1190 424 264 57 0 chr11 79304555 79304661 -42539195 - PB1D10 SINE Alu 0 117 6 8 1190 320 352 29 0 chr11 79304574 79304679 -42539177 - ID_B1 SINE B4 -48 176 69 8 1190 847 129 0 60 chr11 79304712 79304861 -42538995 - B1_Mus1 SINE Alu -8 140 1 8 1190 1361 65 43 0 chr11 79304870 79305054 -42538802 - B2_Mm2 SINE B2 0 195 4 8 1190 567 0 0 0 chr11 79305073 79305136 -42538720 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1190 1185 68 0 0 chr11 79305510 79305656 -42538200 + B1_Mus1 SINE Alu 3 148 0 8 1190 907 96 7 62 chr11 79305942 79306086 -42537770 + B1_Mur3 SINE Alu 14 149 0 8 1190 316 0 77 51 chr11 79306263 79306341 -42537515 + (TTTTG)n Simple_repeat Simple_repeat 5 84 0 8 1190 1104 36 50 0 chr11 79306341 79306481 -42537375 - B1_Mm SINE Alu 0 147 1 8 1190 367 286 9 35 chr11 79306608 79306724 -42537132 + PB1D10 SINE Alu 2 114 -3 8 1190 477 301 79 98 chr11 79307205 79307459 -42536397 + B4 SINE B4 44 292 0 8 1190 877 265 5 60 chr11 79307619 79307836 -42536020 + B3 SINE B2 6 210 -6 8 1190 1034 266 20 63 chr11 79307894 79308195 -42535661 - B4A SINE B4 0 292 5 8 1190 219 152 51 0 chr11 79308222 79308281 -42535575 + (TA)n Simple_repeat Simple_repeat 1 62 0 8 1190 223 216 2 40 chr11 79308714 79308770 -42535086 - PB1 SINE Alu -9 140 73 8 1190 22 0 0 0 chr11 79309410 79309432 -42534424 + AT_rich Low_complexity Low_complexity 1 22 0 8 1190 1180 194 5 5 chr11 79309617 79309824 -42534032 - B3 SINE B2 -4 212 6 8 1190 246 361 19 71 chr11 79309994 79310044 -42533812 + MT2B2 LTR ERVL 124 250 -334 8 1190 337 273 131 0 chr11 79310044 79310143 -42533713 + PB1D7 SINE Alu 2 113 -7 8 1190 1126 89 13 0 chr11 79310492 79310649 -42533207 + B2_Mm2 SINE B2 3 161 -34 8 1190 21 0 0 0 chr11 79310940 79310961 -42532895 + AT_rich Low_complexity Low_complexity 1 21 0 8 1190 938 105 49 0 chr11 79311036 79311179 -42532677 + B1_Mur4 SINE Alu 1 150 0 8 1190 727 284 5 33 chr11 79311324 79311539 -42532317 - B3 SINE B2 -6 210 2 8 1190 432 0 0 0 chr11 79311539 79311587 -42532269 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1190 426 354 38 8 chr11 79311587 79311718 -42532138 - RSINE1 SINE B4 -27 138 4 8 1190 685 194 58 29 chr11 79311985 79312123 -42531733 - B1_Mur2 SINE Alu -7 142 1 8 1190 195 279 144 44 chr11 79312303 79312393 -42531463 - MIRc SINE MIR -101 167 69 8 1190 333 298 0 11 chr11 79312453 79312548 -42531308 - Tigger5 DNA MER2_type -1 2405 2312 8 1190 21 36 0 0 chr11 79313283 79313311 -42530545 + AT_rich Low_complexity Low_complexity 1 28 0 8 1190 680 209 7 7 chr11 79313352 79313487 -42530369 + B1_Mur1 SINE Alu 4 138 -11 8 1190 606 301 48 52 chr11 79313560 79313851 -42530005 + B4A SINE B4 3 292 0 9 1190 492 81 0 0 chr11 79316753 79316827 -42527029 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1190 333 68 0 0 chr11 79317647 79317691 -42526165 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1190 490 261 10 6 chr11 79318291 79318402 -42525454 - PB1D9 SINE Alu -40 109 3 9 1190 659 270 13 0 chr11 79318637 79318789 -42525067 + ID_B1 SINE B4 70 223 -1 9 1190 715 207 21 0 chr11 79318795 79318940 -42524916 + B1_Mur3 SINE Alu 2 149 0 9 1190 248 313 303 13 chr11 79319820 79320053 -42523803 - MTEb LTR MaLR 0 379 79 9 1190 275 219 281 0 chr11 79320260 79320324 -42523532 - B1_Mus1 SINE Alu -43 105 24 9 1190 421 92 361 0 chr11 79320766 79320874 -42522982 - B2_Mm2 SINE B2 -2 193 47 9 1190 1324 74 11 0 chr11 79320902 79321078 -42522778 - B2_Mm1t SINE B2 -14 179 2 9 1190 5279 114 102 31 chr11 79321100 79322682 -42521174 - L1_Mus2 LINE L1 -1 6565 4728 9 1190 834 189 200 0 chr11 79322708 79322883 -42520973 - B3 SINE B2 -4 212 3 9 1190 746 260 4 69 chr11 79322984 79323215 -42520641 - B3 SINE B2 0 216 1 9 1190 279 0 0 0 chr11 79323584 79323615 -42520241 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 1190 7771 91 19 30 chr11 79323615 79324686 -42519170 - Lx3A LINE L1 -13 6968 5909 9 1190 387 0 0 0 chr11 79324686 79324729 -42519127 + (TTA)n Simple_repeat Simple_repeat 2 44 0 9 1190 7771 91 19 30 chr11 79324729 79324805 -42519051 - Lx3A LINE L1 -1073 5908 5833 9 1190 2001 52 41 0 chr11 79324808 79325075 -42518781 + Lx3A LINE L1 5559 5836 -50 9 1190 270 283 139 75 chr11 79325094 79325112 -42518744 - B3 SINE B2 -17 199 110 9 1190 679 228 27 33 chr11 79325112 79325262 -42518594 - RSINE1 SINE B4 -2 163 15 9 1190 270 283 139 75 chr11 79325262 79325281 -42518575 - B3 SINE B2 -17 109 1 9 1190 216 0 0 0 chr11 79325661 79325685 -42518171 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1190 786 180 65 0 chr11 79326049 79326188 -42517668 - B1_Mur3 SINE Alu 0 149 2 9 1190 437 271 96 83 chr11 79326051 79326208 -42517648 - B4 SINE B4 -69 223 65 9 1190 575 175 30 38 chr11 79327080 79327211 -42516645 + B1_Mur3 SINE Alu 18 147 -2 9 1190 24 85 0 0 chr11 79327215 79327274 -42516582 + AT_rich Low_complexity Low_complexity 1 59 0 9 1190 266 73 0 24 chr11 79327279 79327321 -42516535 + (TAG)n Simple_repeat Simple_repeat 1 41 0 9 1190 679 277 10 22 chr11 79327645 79327848 -42516008 + B3A SINE B2 1 201 -15 9 1190 487 292 32 32 chr11 79327948 79328072 -42515784 + RSINE1 SINE B4 2 125 -40 9 1190 306 125 0 0 chr11 79328119 79328167 -42515689 + (GGA)n Simple_repeat Simple_repeat 2 49 0 9 1190 291 294 76 91 chr11 79328170 79328368 -42515488 + B3 SINE B2 1 207 -9 9 1190 216 0 0 0 chr11 79329696 79329720 -42514136 + (TGG)n Simple_repeat Simple_repeat 3 26 0 9 1190 624 116 0 0 chr11 79330945 79331040 -42512816 + (TA)n Simple_repeat Simple_repeat 2 96 0 9 1190 728 154 92 0 chr11 79331387 79331517 -42512339 + B1_Mur3 SINE Alu 1 142 -7 9 1190 234 0 0 0 chr11 79332125 79332151 -42511705 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1190 181 408 79 46 chr11 79332445 79332661 -42511195 + L2b LINE L2 2987 3209 -166 9 1190 221 55 0 53 chr11 79334266 79334304 -42509552 + BC1_Mm scRNA scRNA 1 36 -116 9 1190 244 89 54 0 chr11 79334647 79334703 -42509153 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 9 1190 864 199 14 0 chr11 79334988 79335134 -42508722 + B1_Mur1 SINE Alu 1 148 -1 9 1190 543 232 78 21 chr11 79335179 79335320 -42508536 + B1F2 SINE Alu 1 149 0 9 1190 232 254 134 42 chr11 79335691 79335810 -42508046 + MT2B LTR ERVL 128 257 -344 9 1190 368 98 66 105 chr11 79335751 79335858 -42507998 + B1_Mur4 SINE Alu 43 132 -15 9 1190 1281 62 0 0 chr11 79336170 79336316 -42507540 - B1_Mm SINE Alu 0 147 2 9 1190 27 29 0 0 chr11 79336350 79336384 -42507472 + AT_rich Low_complexity Low_complexity 1 34 0 9 1190 228 278 50 100 chr11 79336459 79336477 -42507379 + MT2B2 LTR ERVL 147 159 -425 9 1190 332 297 19 19 chr11 79336477 79336580 -42507276 + PB1D10 SINE Alu 2 104 -13 9 1190 461 257 60 21 chr11 79337786 79337916 -42505940 + B1F2 SINE Alu 1 131 -18 9 1190 1161 188 10 10 chr11 79338161 79338360 -42505496 + B3 SINE B2 18 216 0 9 1190 1207 139 40 0 chr11 79338477 79338650 -42505206 + B2_Mm2 SINE B2 2 181 -14 9 1190 180 363 106 43 chr11 79338667 79338808 -42505048 + MER5B DNA MER1_type 28 177 -1 9 1190 1094 187 85 5 chr11 79338828 79339027 -42504829 + B3 SINE B2 2 216 0 9 1190 638 163 166 18 chr11 79339056 79339201 -42504655 + B2_Mm2 SINE B2 2 167 -28 9 1190 1041 87 0 0 chr11 79339201 79339351 -42504505 + (TAGG)n Simple_repeat Simple_repeat 2 151 0 9 1190 638 163 166 18 chr11 79339351 79339374 -42504482 + B2_Mm2 SINE B2 168 195 0 9 1190 633 247 40 13 chr11 79339376 79339528 -42504328 + B3A SINE B2 27 182 -16 9 1190 286 267 99 55 chr11 79339645 79339736 -42504120 - PB1D7 SINE Alu 0 120 26 9 1190 825 195 76 12 chr11 79339741 79339912 -42503944 - B3 SINE B2 -34 182 1 9 1190 259 218 4 17 chr11 79342494 79342554 -42501302 - B1_Mus2 SINE Alu -56 64 3 9 1190 273 232 27 80 chr11 79342744 79342819 -42501037 - MER5A1 DNA MER1_type -72 94 24 9 1190 22 0 0 0 chr11 79343678 79343700 -42500156 + AT_rich Low_complexity Low_complexity 1 22 0 9 1190 38 0 0 0 chr11 79344817 79344855 -42499001 + AT_rich Low_complexity Low_complexity 1 38 0 9 1190 280 263 97 8 chr11 79345033 79345167 -42498689 - Lx6 LINE L1 -2 7458 7313 9 1190 662 307 39 10 chr11 79345169 79345376 -42498480 - ID_B1 SINE B4 -11 213 1 9 1190 225 0 0 0 chr11 79346245 79346270 -42497586 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 9 1190 1199 75 0 33 chr11 79346270 79346412 -42497444 - B1_Mus1 SINE Alu -7 141 1 9 1190 3865 190 71 23 chr11 79346412 79347269 -42496587 - RMER1A Other Other -5 1025 1 9 1190 719 191 122 0 chr11 79348214 79348345 -42495511 + B1_Mur4 SINE Alu 2 148 -2 9 1190 373 283 28 122 chr11 79348839 79349020 -42494836 + RSINE1 SINE B4 2 165 0 9 1190 1087 184 56 0 chr11 79349722 79349918 -42493938 + B3 SINE B2 4 210 -6 9 1190 180 0 0 0 chr11 79349952 79349972 -42493884 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1190 26 0 0 0 chr11 79350660 79350686 -42493170 + AT_rich Low_complexity Low_complexity 1 26 0 9 1190 260 238 0 3 chr11 79351431 79351491 -42492365 - B1F SINE Alu -6 143 64 9 1190 292 286 311 16 chr11 79351725 79351844 -42492012 + RSINE1 SINE B4 6 159 -6 9 1190 225 0 0 0 chr11 79351845 79351870 -42491986 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1190 359 306 161 0 chr11 79351904 79352028 -42491828 + B1_Mur2 SINE Alu 1 144 -5 9 1190 283 240 52 26 chr11 79352375 79352452 -42491404 - B1F2 SINE Alu -69 80 2 9 1190 701 24 0 0 chr11 79352689 79352774 -42491082 + L1Md_T LINE L1 6498 6582 0 9 1190 198 0 0 0 chr11 79352790 79352812 -42491044 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 9 1190 340 265 0 35 chr11 79352827 79352913 -42490943 - ID4_ SINE ID 0 83 1 9 1190 933 94 8 0 chr11 79353174 79353301 -42490555 - B1_Mus1 SINE Alu -19 129 2 9 1190 552 196 90 6 chr11 79353313 79353440 -42490416 - B1_Mur2 SINE Alu -8 141 10 9 1190 180 0 0 0 chr11 79354129 79354149 -42489707 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1190 26 50 0 0 chr11 79354420 79354460 -42489396 + AT_rich Low_complexity Low_complexity 1 40 0 9 1190 1279 197 14 0 chr11 79354647 79354860 -42488996 + B3 SINE B2 1 216 0 9 1190 24 53 0 0 chr11 79355660 79355698 -42488158 + AT_rich Low_complexity Low_complexity 1 38 0 9 1190 820 186 220 0 chr11 79355827 79356004 -42487852 + B3 SINE B2 1 216 0 9 1190 485 262 13 65 chr11 79356093 79356248 -42487608 + RSINE1 SINE B4 2 148 -17 9 1190 500 122 14 0 chr11 79356463 79356537 -42487319 - B1_Mus1 SINE Alu -73 75 1 9 1190 389 164 13 76 chr11 79356470 79356549 -42487307 - B4 SINE B4 -140 152 79 9 1190 882 181 70 35 chr11 79356653 79356853 -42487003 - RLTR31_Mm LTR ERVK 0 561 355 9 1190 7974 88 10 7 chr11 79356858 79358063 -42485793 - Lx LINE L1 -2 6652 5449 9 1190 1421 167 24 42 chr11 79358063 79358414 -42485442 - RLTR31_Mm LTR ERVK -198 363 5 9 1190 287 298 83 0 chr11 79358414 79358498 -42485358 + B2_Mm2 SINE B2 1 91 -104 9 1190 639 243 21 35 chr11 79358663 79358804 -42485052 + B3 SINE B2 73 211 -5 9 1190 204 135 0 0 chr11 79360020 79360057 -42483799 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1190 395 308 111 7 chr11 79360063 79360207 -42483649 - RSINE1 SINE B4 -6 159 1 9 1190 867 194 55 104 chr11 79360209 79360410 -42483446 - B3A SINE B2 -4 191 1 9 1190 489 269 9 0 chr11 79361458 79361566 -42482290 + B1_Mur1 SINE Alu 39 147 -2 9 1190 853 259 18 62 chr11 79361644 79361870 -42481986 - B3 SINE B2 0 216 1 9 1190 650 182 67 22 chr11 79362477 79362612 -42481244 + B1_Mur2 SINE Alu 8 148 -1 9 1190 445 191 273 0 chr11 79363148 79363258 -42480598 + B1_Mur2 SINE Alu 2 141 -8 9 1190 852 176 7 7 chr11 79363464 79363601 -42480255 + B1_Mur4 SINE Alu 1 137 -13 9 1190 218 338 29 0 chr11 79363813 79363881 -42479975 + ID4_ SINE ID 3 72 -11 9 1190 736 185 229 11 chr11 79364868 79365043 -42478813 + B3 SINE B2 2 214 -2 9 1190 25 0 0 0 chr11 79365044 79365069 -42478787 + AT_rich Low_complexity Low_complexity 1 25 0 9 1190 423 0 0 0 chr11 79365161 79365208 -42478648 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1190 252 0 0 0 chr11 79365208 79365235 -42478621 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1190 359 277 0 12 chr11 79365462 79365546 -42478310 + RSINE1 SINE B4 3 85 -80 1 1190 222 62 0 0 chr11 79365756 79365788 -42478068 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1 1190 810 201 72 56 chr11 79365789 79365984 -42477872 - B3 SINE B2 -18 198 1 1 1190 564 290 116 52 chr11 79366055 79366401 -42477455 - RLTR9A LTR ERVK 0 368 1 1 1190 268 325 47 39 chr11 79366810 79366938 -42476918 + ID_B1 SINE B4 51 179 -45 1 1190 414 133 0 16 chr11 79366938 79366999 -42476857 + ID4 SINE ID 11 70 -13 1 1190 340 227 0 15 chr11 79366939 79367006 -42476850 + tRNA-Ala-GCY_ tRNA tRNA 6 71 -4 1 1190 342 0 0 0 chr11 79367023 79367061 -42476795 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1190 273 118 0 0 chr11 79367945 79367996 -42475860 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1190 1091 30 0 0 chr11 79367996 79368127 -42475729 - B1_Mus1 SINE Alu 0 148 18 1 1190 24 0 0 0 chr11 79368294 79368318 -42475538 + AT_rich Low_complexity Low_complexity 1 24 0 1 1190 236 183 106 91 chr11 79368322 79368388 -42475468 + PB1D10 SINE Alu 43 109 -8 1 1190 250 172 167 33 chr11 79368521 79368581 -42475275 - B3A SINE B2 -81 117 50 1 1190 1621 42 5 5 chr11 79369517 79369706 -42474150 - B2_Mm2 SINE B2 -6 189 1 1 1190 878 246 38 24 chr11 79370678 79370890 -42472966 + B3 SINE B2 2 216 0 1 1190 607 229 74 1 chr11 79371000 79371135 -42472721 - B1_Mur1 SINE Alu -2 147 1 1 1190 344 325 104 16 chr11 79371026 79371151 -42472705 - B4 SINE B4 -86 206 71 1 1190 649 202 101 27 chr11 79371564 79371782 -42472074 + L1MA8 LINE L1 6007 6246 -45 1 1190 1237 55 0 0 chr11 79371784 79371930 -42471926 + B1_Mus1 SINE Alu 1 146 -2 1 1190 222 37 0 0 chr11 79371942 79371969 -42471887 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 1 1190 239 312 34 68 chr11 79372021 79372138 -42471718 + MT2B2 LTR ERVL 153 265 -319 1 1190 586 259 21 21 chr11 79372033 79372175 -42471681 + ID_B1 SINE B4 82 223 -1 1 1190 341 314 9 45 chr11 79372177 79372287 -42471569 + ID_B1 SINE B4 1 106 -118 1 1190 473 278 37 0 chr11 79372294 79372402 -42471454 + ID_B1 SINE B4 84 195 -29 1 1190 264 328 15 0 chr11 79372438 79372505 -42471351 + ID4_ SINE ID 15 82 -1 1 1190 558 301 20 0 chr11 79372585 79372731 -42471125 + B1F SINE Alu 1 149 0 1 1190 1244 61 0 20 chr11 79373184 79373334 -42470522 - B1_Mus1 SINE Alu -1 147 1 1 1190 1010 187 55 10 chr11 79373390 79373590 -42470266 - B3 SINE B2 -6 210 2 1 1190 456 252 94 40 chr11 79373965 79374114 -42469742 - RSINE1 SINE B4 -6 159 3 1 1190 470 216 52 92 chr11 79375008 79375161 -42468695 + B1_Mur2 SINE Alu 1 147 -2 1 1190 321 26 0 0 chr11 79375242 79375280 -42468576 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 1190 664 306 74 10 chr11 79375651 79375977 -42467879 + L1MA6 LINE L1 5630 5974 -326 1 1190 1823 115 21 68 chr11 79375979 79376316 -42467540 - ORR1A4 LTR MaLR -8 321 1 1 1190 248 263 40 87 chr11 79376343 79376466 -42467390 + L1MA6 LINE L1 6053 6172 -128 1 1190 442 155 214 58 chr11 79376466 79376569 -42467287 + PB1D9 SINE Alu 1 119 -1 1 1190 248 263 40 87 chr11 79376569 79376595 -42467261 + L1MA6 LINE L1 6173 6195 -105 1 1190 2323 182 25 2 chr11 79376985 79377393 -42466463 + Lx4A LINE L1 6642 7058 0 1 1190 238 139 23 0 chr11 79377437 79377480 -42466376 - ID2 SINE ID -39 44 1 1 1190 1377 86 27 5 chr11 79377778 79377966 -42465890 - B2_Mm1a SINE B2 0 193 2 1 1190 409 159 0 0 chr11 79378664 79378727 -42465129 + B1F2 SINE Alu 47 109 -40 1 1190 232 192 25 76 chr11 79378665 79378744 -42465112 + MT2B LTR ERVL 205 279 -322 1 1190 369 62 0 0 chr11 79379078 79379126 -42464730 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 1 1190 894 187 0 0 chr11 79379126 79379265 -42464591 - B1_Mur3 SINE Alu -9 140 2 1 1190 254 197 45 0 chr11 79379692 79379758 -42464098 + ID4 SINE ID 15 83 0 1 1190 316 217 17 0 chr11 79379780 79379840 -42464016 + B3A SINE B2 2 62 -136 1 1190 527 325 0 47 chr11 79380176 79380347 -42463509 - RSINE1 SINE B4 0 165 3 1 1190 745 314 111 33 chr11 79380458 79380515 -42463341 - MTD LTR MaLR 0 419 361 1 1190 1320 188 10 0 chr11 79380515 79380723 -42463133 + B3 SINE B2 1 210 -6 1 1190 745 314 111 33 chr11 79380723 79381024 -42462832 - MTD LTR MaLR -59 360 33 1 1190 187 337 35 24 chr11 79381235 79381320 -42462536 - L2 LINE L2 -621 2798 2713 1 1190 22 35 0 0 chr11 79382826 79382855 -42461001 + AT_rich Low_complexity Low_complexity 1 29 0 1 1190 441 0 0 0 chr11 79383156 79383205 -42460651 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1190 613 283 74 16 chr11 79384427 79384617 -42459239 + B4 SINE B4 1 201 -91 1 1190 636 215 40 0 chr11 79384781 79384914 -42458942 - B1_Mur2 SINE Alu -2 146 10 1 1190 249 292 154 13 chr11 79385606 79385755 -42458101 + MER5A DNA MER1_type 13 182 -7 1 1190 362 215 157 58 chr11 79385787 79385900 -42457956 + PB1D7 SINE Alu 12 120 0 1 1190 380 235 12 12 chr11 79386054 79386140 -42457716 - B1F1 SINE Alu -63 86 1 1 1190 902 132 7 14 chr11 79386194 79386332 -42457524 + B1_Mus1 SINE Alu 1 137 -11 1 1190 1061 217 43 5 chr11 79386352 79386560 -42457296 - B3 SINE B2 0 216 1 1 1190 1687 47 5 0 chr11 79386695 79386887 -42456969 - B2_Mm1a SINE B2 0 193 1 1 1190 217 299 75 0 chr11 79387012 79387079 -42456777 + RSINE1 SINE B4 94 165 0 1 1190 407 164 26 40 chr11 79387077 79387153 -42456703 + ID_B1 SINE B4 150 224 0 1 1190 195 351 40 0 chr11 79388360 79388434 -42455422 - MIRc SINE MIR -31 237 161 1 1190 296 215 31 0 chr11 79388585 79388650 -42455206 + ID4_ SINE ID 1 67 -16 1 1190 1167 41 7 0 chr11 79389704 79389850 -42454006 - B1_Mus1 SINE Alu 0 148 2 1 1190 228 282 149 35 chr11 79390887 79391001 -42452855 + MT2B LTR ERVL 152 278 -323 1 1190 577 172 0 0 chr11 79390919 79391018 -42452838 + B1_Mur3 SINE Alu 41 139 -10 1 1190 180 0 0 0 chr11 79392337 79392357 -42451499 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1190 180 97 0 0 chr11 79395040 79395071 -42448785 + (CCCA)n Simple_repeat Simple_repeat 1 31 0 1 1190 195 291 125 66 chr11 79395555 79395691 -42448165 + MER5B DNA MER1_type 35 178 0 1 1190 221 0 35 0 chr11 79396210 79396239 -42447617 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1190 775 199 67 67 chr11 79396502 79396712 -42447144 + B3 SINE B2 4 213 -3 1 1190 297 0 0 0 chr11 79397248 79397281 -42446575 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1190 322 165 122 12 chr11 79397291 79397377 -42446479 + B3 SINE B2 57 140 -53 1 1190 249 33 0 0 chr11 79397389 79397419 -42446437 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1 1190 278 270 0 63 chr11 79397437 79397532 -42446324 - RLTR25A LTR ERVK -493 610 522 1 1190 822 96 0 31 chr11 79397449 79397578 -42446278 - B1_Mus1 SINE Alu -23 125 1 1 1190 21 0 0 0 chr11 79397578 79397599 -42446257 + AT_rich Low_complexity Low_complexity 1 21 0 1 1190 352 247 13 0 chr11 79397739 79397816 -42446040 + ID4 SINE ID 3 80 -3 1 1190 653 190 31 23 chr11 79398116 79398245 -42445611 - B1_Mur3 SINE Alu -17 132 3 1 1190 741 289 48 68 chr11 79398264 79398557 -42445299 + B4A SINE B4 4 290 -2 1 1190 2149 123 143 8 chr11 79399532 79399902 -42443954 + MTC LTR MaLR 1 420 -1 1 1190 230 224 0 94 chr11 79399931 79399995 -42443861 - PB1 SINE Alu -2 125 68 1 1190 691 158 0 0 chr11 79400262 79400376 -42443480 - URR1B DNA MER1_type 0 225 112 1 1190 381 267 31 70 chr11 79400372 79400501 -42443355 + B3A SINE B2 75 198 0 1 1190 291 54 0 0 chr11 79400590 79400627 -42443229 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1190 618 82 0 0 chr11 79401277 79401362 -42442494 + (ATG)n Simple_repeat Simple_repeat 1 85 0 1 1190 1129 207 10 0 chr11 79401373 79401581 -42442275 + B3 SINE B2 1 210 -6 1 1190 1351 89 16 0 chr11 79401588 79401779 -42442077 + B2_Mm2 SINE B2 1 194 -1 1 1190 701 223 47 43 chr11 79402212 79402423 -42441433 + ID_B1 SINE B4 2 213 -11 1 1190 187 350 58 25 chr11 79402477 79402597 -42441259 - MIR SINE MIR -28 234 111 1 1190 331 302 38 23 chr11 79402678 79402810 -42441046 - MLT1B LTR MaLR -10 380 247 1 1190 288 0 0 0 chr11 79403423 79403455 -42440401 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1 1190 219 36 0 0 chr11 79403492 79403520 -42440336 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1190 180 0 0 0 chr11 79404612 79404632 -42439224 + (CCCCG)n Simple_repeat Simple_repeat 5 24 0 1 1190 21 0 0 0 chr11 79404634 79404655 -42439201 + GC_rich Low_complexity Low_complexity 1 21 0 1 1190 23 78 0 0 chr11 79404764 79404815 -42439041 + GC_rich Low_complexity Low_complexity 1 51 0 1 1190 201 340 37 19 chr11 79406452 79406560 -42437296 - L3 LINE CR1 -605 3884 3775 1 1190 185 0 40 0 chr11 79406784 79406809 -42437047 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1190 279 0 0 0 chr11 79406810 79406841 -42437015 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1190 225 293 27 0 chr11 79407535 79407610 -42436246 + ID2 SINE ID 1 77 -6 1 1190 1013 83 0 0 chr11 79407635 79407768 -42436088 + B1_Mus1 SINE Alu 2 134 -14 1 1190 180 0 0 0 chr11 79407770 79407790 -42436066 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1190 180 0 0 0 chr11 79407819 79407839 -42436017 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1190 313 287 9 44 chr11 79407861 79407974 -42435882 + Lx8 LINE L1 7115 7223 -250 1 1190 336 213 13 0 chr11 79407962 79408037 -42435819 + Lx8 LINE L1 7151 7226 -247 1 1190 316 303 11 22 chr11 79408052 79408143 -42435713 + RMER15 LTR ERVL 371 460 -115 1 1190 200 350 0 0 chr11 79408148 79408245 -42435611 + G-rich Low_complexity Low_complexity 1 97 0 1 1190 266 314 73 16 chr11 79408353 79408476 -42435380 + ID_B1 SINE B4 79 208 -16 1 1190 275 264 0 14 chr11 79408488 79408561 -42435295 + RSINE1 SINE B4 92 163 -2 1 1190 306 300 0 0 chr11 79408557 79408637 -42435219 + ID_B1 SINE B4 133 212 -12 1 1190 216 0 0 0 chr11 79408637 79408661 -42435195 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1190 649 146 0 0 chr11 79408665 79408768 -42435088 + U6 snRNA snRNA 3 105 -2 1 1190 360 292 103 7 chr11 79408784 79408929 -42434927 + L1MC3 LINE L1 7087 7245 -540 1 1190 496 277 51 0 chr11 79409474 79409611 -42434245 - ID_B1 SINE B4 -2 222 79 1 1190 667 194 81 0 chr11 79409781 79409905 -42433951 + B1_Mur2 SINE Alu 1 134 -15 1 1190 702 170 0 36 chr11 79409950 79410224 -42433632 + GA-rich Low_complexity Low_complexity 1 263 0 1 1190 202 360 11 0 chr11 79410795 79410884 -42432972 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 1 1190 2046 132 50 29 chr11 79410976 79411319 -42432537 - MTC LTR MaLR -4 417 68 1 1190 617 210 46 102 chr11 79411313 79411347 -42432509 - B2_Mm2 SINE B2 -1 194 159 1 1190 207 0 0 0 chr11 79411347 79411370 -42432486 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1190 835 139 11 25 chr11 79411370 79411531 -42432325 - B3 SINE B2 -37 158 10 1 1190 459 141 13 0 chr11 79411538 79411616 -42432240 - MTC LTR MaLR -342 79 1 1 1190 595 211 89 0 chr11 79412043 79412166 -42431690 + B3 SINE B2 3 136 -80 1 1190 383 149 30 0 chr11 79412172 79412239 -42431617 - B3 SINE B2 -123 93 25 1 1190 699 168 87 7 chr11 79412270 79412408 -42431448 - B1_Mur4 SINE Alu -1 149 1 1 1190 1124 81 92 0 chr11 79412411 79412439 -42431417 - B2_Mm2 SINE B2 -6 189 151 1 1190 258 32 0 0 chr11 79412439 79412470 -42431386 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1190 1124 81 92 0 chr11 79412470 79412614 -42431242 - B2_Mm2 SINE B2 -45 150 2 1 1190 22 0 0 0 chr11 79413422 79413444 -42430412 + GC_rich Low_complexity Low_complexity 1 22 0 1 1190 384 337 111 0 chr11 79413778 79413977 -42429879 - L1MA7 LINE L1 -38 6253 6033 1 1190 212 169 117 17 chr11 79414285 79414345 -42429511 - ID SINE ID -157 67 2 1 1190 25 0 0 0 chr11 79414607 79414632 -42429224 + AT_rich Low_complexity Low_complexity 1 25 0 1 1190 701 228 82 10 chr11 79414705 79414913 -42428943 - ID_B1 SINE B4 -1 223 1 1 1190 362 231 0 0 chr11 79414940 79415018 -42428838 + ID4 SINE ID 1 78 -5 1 1190 1058 106 4 21 chr11 79415018 79415552 -42428304 + (TGGA)n Simple_repeat Simple_repeat 1 524 0 1 1190 479 252 10 0 chr11 79415604 79415707 -42428149 - PB1D10 SINE Alu -13 104 1 1 1190 804 163 256 0 chr11 79415845 79416017 -42427839 + B3 SINE B2 1 216 0 1 1190 624 209 144 0 chr11 79416136 79416289 -42427567 - B3 SINE B2 0 216 42 1 1190 406 263 30 0 chr11 79416285 79416384 -42427472 - PB1D9 SINE Alu -17 103 2 1 1190 29 36 0 35 chr11 79416387 79416429 -42427427 + AT_rich Low_complexity Low_complexity 1 41 0 1 1190 1093 88 0 0 chr11 79416429 79416576 -42427280 + B1_Mus1 SINE Alu 2 148 0 1 1190 29 36 0 35 chr11 79416576 79416591 -42427265 + AT_rich Low_complexity Low_complexity 1 15 0 1 1190 1442 33 0 11 chr11 79416591 79416774 -42427082 - B2_Mm2 SINE B2 -14 181 1 1 1190 292 187 94 31 chr11 79416801 79416928 -42426928 - L1MD LINE L1 -1805 4341 4207 1 1190 418 265 91 45 chr11 79417473 79417627 -42426229 + RSINE1 SINE B4 3 163 -2 1 1190 183 80 0 0 chr11 79417661 79417686 -42426170 + (CATTA)n Simple_repeat Simple_repeat 1 25 0 1 1190 1065 61 47 0 chr11 79417741 79417889 -42425967 + B2_Mm2 SINE B2 37 191 -4 1 1190 221 286 91 45 chr11 79418383 79418515 -42425341 + MIR SINE MIR 125 262 0 1 1190 267 241 0 0 chr11 79419774 79419857 -42423999 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1190 345 82 0 0 chr11 79419857 79419906 -42423950 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1190 1334 59 16 5 chr11 79420148 79420334 -42423522 + B2_Mm2 SINE B2 2 189 -6 1 1190 821 143 0 35 chr11 79420441 79420586 -42423270 - B1_Mur4 SINE Alu -10 140 1 1 1190 452 269 229 0 chr11 79420597 79420820 -42423036 - Lx8 LINE L1 -2 7471 7198 1 1190 954 306 71 0 chr11 79420836 79421176 -42422680 - Lx8 LINE L1 -322 7151 6788 1 1190 272 234 247 32 chr11 79421189 79421321 -42422535 - B4A SINE B4 -90 202 59 1 1190 1598 168 140 3 chr11 79421630 79421959 -42421897 + ORR1D1 LTR MaLR 1 374 0 1 1190 979 38 105 0 chr11 79422534 79422667 -42421189 + B1_Mus2 SINE Alu 1 147 0 1 1190 464 231 192 61 chr11 79423056 79423254 -42420602 + ID_B1 SINE B4 1 224 0 1 1190 206 208 0 40 chr11 79423255 79423305 -42420551 + A-rich Low_complexity Low_complexity 5 52 0 1 1190 235 343 38 0 chr11 79424677 79424782 -42419074 - MIRb SINE MIR -126 142 34 1 1190 546 240 121 33 chr11 79425352 79425567 -42418289 - B4A SINE B4 -8 284 51 1 1190 378 0 0 0 chr11 79425678 79425720 -42418136 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1190 825 108 202 42 chr11 79427032 79427225 -42416631 - URR1B DNA MER1_type 0 225 2 1 1190 471 331 54 66 chr11 79427648 79427965 -42415891 - L1MEf LINE L1 -5454 746 434 1 1190 384 82 0 0 chr11 79428254 79428315 -42415541 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1190 273 288 44 81 chr11 79429028 79429164 -42414692 + MIR SINE MIR 103 233 -29 1 1191 279 219 117 49 chr11 79429924 79430078 -42413778 + MIRc SINE MIR 1 163 -105 1 1191 906 159 0 0 chr11 79430180 79430318 -42413538 + B1_Mus1 SINE Alu 2 139 -9 1 1191 285 29 0 0 chr11 79430318 79430352 -42413504 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1191 335 240 98 30 chr11 79431821 79431954 -42411902 - RMER15 LTR ERVL -12 563 422 1 1191 300 319 0 0 chr11 79432055 79432149 -42411707 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1191 330 87 0 0 chr11 79432208 79432254 -42411602 + (TGAG)n Simple_repeat Simple_repeat 1 46 0 1 1191 871 271 48 0 chr11 79432319 79432529 -42411327 + ID_B1 SINE B4 3 222 -2 1 1191 570 202 17 17 chr11 79432569 79432685 -42411171 + PB1D10 SINE Alu 1 116 -1 1 1191 1144 55 7 0 chr11 79432804 79432950 -42410906 - B1_Mus1 SINE Alu 0 148 2 1 1191 469 229 18 27 chr11 79434197 79434309 -42409547 + PB1D10 SINE Alu 2 112 -5 1 1191 25 31 0 0 chr11 79434386 79434418 -42409438 + AT_rich Low_complexity Low_complexity 1 32 0 1 1191 316 250 174 30 chr11 79434430 79434562 -42409294 - MER21B LTR ERV1 -615 248 98 1 1191 413 263 146 44 chr11 79434707 79434970 -42408886 - MTD LTR MaLR -115 292 1 1 1191 450 0 0 0 chr11 79435175 79435225 -42408631 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1191 824 174 188 10 chr11 79435704 79435896 -42407960 - URR1A DNA MER1_type 0 226 1 1 1191 319 325 90 97 chr11 79435896 79436050 -42407806 + MTEa LTR MaLR 35 204 -175 1 1191 198 0 0 0 chr11 79436050 79436072 -42407784 + (CCA)n Simple_repeat Simple_repeat 2 23 0 1 1191 319 325 90 97 chr11 79436072 79436196 -42407660 + MTEa LTR MaLR 205 310 -69 1 1191 354 45 0 0 chr11 79436202 79436246 -42407610 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1 1191 674 191 86 11 chr11 79436404 79436579 -42407277 + B2_Mm2 SINE B2 1 188 -7 1 1191 351 0 0 0 chr11 79436896 79436935 -42406921 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1191 697 132 74 0 chr11 79436935 79437056 -42406800 - B1_Mur3 SINE Alu -9 140 11 1 1191 322 212 58 39 chr11 79436970 79437073 -42406783 - MT2B LTR ERVL -343 258 154 1 1191 183 250 16 32 chr11 79437712 79437774 -42406082 + MIRc SINE MIR 73 133 -135 1 1191 341 285 40 49 chr11 79439722 79439941 -42403915 - B4A SINE B4 0 292 7 1 1191 620 196 68 0 chr11 79440331 79440464 -42403392 - B1F SINE Alu -7 142 1 1 1191 973 216 55 0 chr11 79440479 79440678 -42403178 + B3 SINE B2 2 211 -5 1 1191 649 251 144 12 chr11 79440993 79441243 -42402613 + L1M2 LINE L1 4733 5015 -1128 1 1191 312 145 46 126 chr11 79441364 79441451 -42402405 - PB1D9 SINE Alu -7 113 34 1 1191 853 316 23 58 chr11 79441514 79441800 -42402056 - MER2 DNA MER2_type -7 338 65 1 1191 341 197 0 66 chr11 79441800 79441876 -42401980 - ID4_ SINE ID -9 74 4 1 1191 853 316 23 58 chr11 79441876 79441932 -42401924 - MER2 DNA MER2_type -281 64 8 1 1191 570 86 0 0 chr11 79441932 79442013 -42401843 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1191 1077 69 14 0 chr11 79442086 79442231 -42401625 - B1_Mus2 SINE Alu 0 147 1 1 1191 532 269 29 36 chr11 79442342 79442481 -42401375 - B3A SINE B2 -3 195 58 1 1191 406 261 130 0 chr11 79442484 79442599 -42401257 + B3 SINE B2 87 216 0 1 1191 339 333 36 0 chr11 79442611 79442722 -42401134 + RSINE1 SINE B4 3 117 -48 1 1191 869 0 10 0 chr11 79443743 79443844 -42400012 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1191 216 0 0 0 chr11 79444399 79444423 -42399433 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1191 905 174 207 6 chr11 79444448 79444627 -42399229 - B3 SINE B2 0 216 2 1 1191 431 263 0 0 chr11 79444725 79444824 -42399032 - ID_B1 SINE B4 -2 222 124 1 1191 1117 80 0 0 chr11 79444857 79444995 -42398861 - B1_Mus1 SINE Alu -10 138 1 1 1191 255 288 155 43 chr11 79445033 79445240 -42398616 - L1MC4 LINE L1 -226 7816 7587 1 1191 190 116 23 23 chr11 79445577 79445621 -42398235 + CT-rich Low_complexity Low_complexity 4 47 0 1 1191 1294 261 85 39 chr11 79447470 79447857 -42395999 - MTD LTR MaLR -14 405 1 1 1191 234 282 5 25 chr11 79447879 79448010 -42395846 + L2c LINE L2 3091 3217 -158 1 1191 198 0 0 0 chr11 79448791 79448813 -42395043 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1191 396 259 64 18 chr11 79448924 79449034 -42394822 - PB1D10 SINE Alu -2 115 1 1 1191 37 52 0 0 chr11 79449044 79449102 -42394754 + AT_rich Low_complexity Low_complexity 1 58 0 1 1191 530 233 66 22 chr11 79449115 79449251 -42394605 - B1_Mur2 SINE Alu -6 143 2 1 1191 1218 178 29 5 chr11 79449258 79449467 -42394389 - B3 SINE B2 0 216 3 1 1191 273 57 0 0 chr11 79450212 79450247 -42393609 + (TCCCC)n Simple_repeat Simple_repeat 2 36 0 1 1191 192 77 0 0 chr11 79450388 79450414 -42393442 + (TCC)n Simple_repeat Simple_repeat 2 27 0 1 1191 726 173 49 28 chr11 79450662 79450749 -42393107 + B1_Mus2 SINE Alu 2 85 -62 1 1191 876 46 0 0 chr11 79450749 79450858 -42392998 + (GA)n Simple_repeat Simple_repeat 1 109 0 1 1191 726 173 49 28 chr11 79450858 79450913 -42392943 + B1_Mus2 SINE Alu 86 146 -1 1 1191 1296 20 0 0 chr11 79451144 79451290 -42392566 - B1_Mus2 SINE Alu 0 147 2 1 1191 1004 245 10 5 chr11 79451416 79451621 -42392235 - B3 SINE B2 -1 215 10 1 1191 266 343 67 72 chr11 79452416 79452523 -42391333 - ID_B1 SINE B4 -2 222 126 1 1191 576 224 0 0 chr11 79452523 79452630 -42391226 - U6 snRNA snRNA 0 107 1 1 1191 266 343 67 72 chr11 79452630 79452745 -42391111 - ID_B1 SINE B4 -99 125 1 1 1191 1444 59 21 5 chr11 79452866 79453054 -42390802 + B2_Mm2 SINE B2 1 191 -4 1 1191 390 21 0 0 chr11 79454178 79454225 -42389631 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1191 372 250 142 9 chr11 79454226 79454339 -42389517 - RSINE1 SINE B4 -30 135 8 1 1191 282 322 25 25 chr11 79454829 79454947 -42388909 + MIRc SINE MIR 43 160 -108 1 1191 193 364 67 15 chr11 79454953 79455087 -42388769 + L2c LINE L2 3246 3386 -1 1 1191 217 265 153 0 chr11 79455655 79455753 -42388103 + PB1D10 SINE Alu 2 114 -3 1 1191 198 184 184 0 chr11 79455943 79455992 -42387864 + MIRc SINE MIR 91 148 -120 1 1191 186 118 0 0 chr11 79456239 79456273 -42387583 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 1 1191 900 139 0 22 chr11 79456287 79456471 -42387385 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1191 1003 74 23 11 chr11 79456482 79456659 -42387197 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1191 271 266 275 0 chr11 79457305 79457414 -42386442 - MER5B DNA MER1_type -23 155 17 1 1191 528 266 6 87 chr11 79457620 79457793 -42386063 - RSINE1 SINE B4 -1 164 6 1 1191 454 289 141 10 chr11 79459157 79459349 -42384507 + ID_B1 SINE B4 8 224 0 1 1191 849 205 64 20 chr11 79459351 79459555 -42384301 - B3 SINE B2 -3 213 1 1 1191 311 171 174 47 chr11 79459593 79459679 -42384177 - PB1D7 SINE Alu 0 120 24 1 1191 214 338 25 0 chr11 79459695 79459775 -42384081 - MIR SINE MIR -65 143 62 1 1191 608 48 12 0 chr11 79459781 79459865 -42383991 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1191 215 267 118 10 chr11 79461828 79461930 -42381926 - MIR SINE MIR -91 171 59 1 1191 312 115 0 0 chr11 79462264 79462316 -42381540 + B3A SINE B2 1 52 -146 1 1191 244 277 60 0 chr11 79463143 79463226 -42380630 - L2 LINE L2 -983 2436 2349 1 1191 274 333 0 23 chr11 79463274 79463360 -42380496 - MER82 DNA MER2_type -569 84 1 1 1191 244 324 0 13 chr11 79463356 79463431 -42380425 + PB1D10 SINE Alu 2 75 -42 1 1191 1029 257 9 14 chr11 79463467 79463688 -42380168 + ID_B1 SINE B4 3 222 -2 1 1191 706 230 22 0 chr11 79464945 79465084 -42378772 + B1_Mur3 SINE Alu 2 143 -6 1 1191 189 0 0 0 chr11 79465086 79465107 -42378749 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1191 287 281 114 19 chr11 79465245 79465350 -42378506 + PB1D10 SINE Alu 1 115 -2 1 1191 348 167 45 0 chr11 79465853 79465919 -42377937 - ID4_ SINE ID -13 70 2 1 1191 207 342 76 42 chr11 79466459 79466578 -42377278 + L2a LINE L2 3279 3401 -25 1 1191 469 269 76 8 chr11 79467206 79467260 -42376596 + B1_Mur1 SINE Alu 3 64 -85 1 1191 477 0 0 0 chr11 79467260 79467313 -42376543 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1191 469 269 76 8 chr11 79467313 79467389 -42376467 + B1_Mur1 SINE Alu 65 141 -8 1 1191 982 156 0 26 chr11 79468395 79468546 -42375310 + B1_Mur3 SINE Alu 1 147 -2 1 1191 279 272 161 0 chr11 79468584 79468665 -42375191 - RSINE1 SINE B4 -35 130 37 1 1191 883 184 14 0 chr11 79468739 79468886 -42374970 - B1_Mur4 SINE Alu -1 149 1 1 1191 396 0 0 0 chr11 79468896 79468940 -42374916 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1191 657 277 13 0 chr11 79468941 79469096 -42374760 - B3A SINE B2 -34 164 8 1 1191 303 262 12 12 chr11 79470030 79470111 -42373745 - ID SINE ID -142 82 2 1 1191 624 176 120 0 chr11 79470137 79470262 -42373594 - B1_Mur1 SINE Alu -9 140 1 1 1191 457 297 0 0 chr11 79470418 79470536 -42373320 - ID_B1 SINE B4 -2 222 105 1 1191 192 179 0 0 chr11 79471190 79471229 -42372627 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1191 766 68 246 0 chr11 79471262 79471380 -42372476 - B1_Mus1 SINE Alu 0 148 2 1 1191 1003 143 0 0 chr11 79471439 79471586 -42372270 + B1_Mus1 SINE Alu 2 148 0 1 1191 252 319 74 21 chr11 79471776 79471931 -42371925 - MIRb SINE MIR -29 239 78 1 1191 391 283 43 17 chr11 79471973 79472088 -42371768 - PB1D7 SINE Alu -2 118 1 1 1191 225 289 231 0 chr11 79472554 79472675 -42371181 - MIRb SINE MIR -85 183 35 1 1191 1246 149 81 9 chr11 79472983 79473193 -42370663 - URR1A DNA MER1_type -1 225 1 1 1191 495 155 0 0 chr11 79473215 79473318 -42370538 + (TG)n Simple_repeat Simple_repeat 1 103 0 1 1191 194 275 34 76 chr11 79477011 79477129 -42366727 - L2a LINE L2 -336 3090 2978 1 1191 315 0 0 0 chr11 79478524 79478559 -42365297 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1191 448 165 172 60 chr11 79478563 79478679 -42365177 - B3A SINE B2 -69 129 1 1 1191 482 296 30 60 chr11 79478679 79478880 -42364976 - B3 SINE B2 -21 195 1 1 1191 548 257 0 68 chr11 79478927 79479073 -42364783 - B1F2 SINE Alu -13 136 1 1 1191 221 348 100 36 chr11 79479346 79479486 -42364370 + MIRb SINE MIR 21 169 -99 1 1191 393 321 41 41 chr11 79480600 79480769 -42363087 + MER104 DNA Tc2 13 181 0 1 1191 198 291 167 38 chr11 79480861 79480993 -42362863 + MIRb SINE MIR 3 151 -117 1 1191 360 0 0 0 chr11 79481013 79481053 -42362803 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1191 405 0 0 0 chr11 79481134 79481179 -42362677 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1191 291 114 0 0 chr11 79481264 79481308 -42362548 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1191 981 206 30 40 chr11 79481313 79481515 -42362341 - B3 SINE B2 -16 200 1 1 1191 232 281 132 40 chr11 79483255 79483407 -42360449 + MT2B LTR ERVL 82 247 -354 1 1191 381 214 0 67 chr11 79483349 79483439 -42360417 + PB1D9 SINE Alu 37 120 0 1 1191 898 171 0 7 chr11 79484443 79484590 -42359266 - B1_Mus2 SINE Alu 0 147 2 1 1191 342 313 97 0 chr11 79484743 79484877 -42358979 - MLT1B LTR MaLR -4 386 240 1 1191 628 236 0 48 chr11 79484923 79485070 -42358786 - ID_B1 SINE B4 0 224 85 1 1191 469 321 7 14 chr11 79485067 79485206 -42358650 - MLT1B LTR MaLR -225 165 28 1 1191 458 255 0 10 chr11 79485528 79485631 -42358225 - B1_Mus2 SINE Alu -1 146 45 1 1191 447 226 28 0 chr11 79485780 79485886 -42357970 - PB1D7 SINE Alu 0 120 12 1 1191 1347 77 0 0 chr11 79486135 79486394 -42357462 + (TG)n Simple_repeat Simple_repeat 1 259 0 1 1191 254 305 43 53 chr11 79488720 79488893 -42354963 - MIR SINE MIR -83 193 24 1 1191 1152 196 18 26 chr11 79489060 79489286 -42354570 + URR1B DNA MER1_type 2 225 0 1 1191 425 76 15 0 chr11 79490698 79490764 -42353092 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1191 239 289 82 0 chr11 79492645 79492718 -42351138 + MIRc SINE MIR 98 179 -89 1 1191 1390 207 92 2 chr11 79493383 79493772 -42350084 - RMER15 LTR ERVL -44 531 1 1 1191 210 128 0 0 chr11 79493794 79493833 -42350023 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 1191 592 197 34 8 chr11 79494670 79494788 -42349068 - B1_Mur1 SINE Alu -13 136 16 1 1191 279 361 45 83 chr11 79494688 79494827 -42349029 - B4A SINE B4 -86 206 72 1 1191 1059 198 35 20 chr11 79494827 79495028 -42348828 - B3 SINE B2 -10 206 3 1 1191 279 361 45 83 chr11 79495028 79495045 -42348811 - B4A SINE B4 -221 71 56 1 1191 290 216 115 18 chr11 79495178 79495291 -42348565 - Lx4B LINE L1 -7 7051 6928 1 1191 233 125 20 59 chr11 79495883 79495934 -42347922 + RSINE1 SINE B4 3 51 -114 1 1191 23 33 0 0 chr11 79496113 79496143 -42347713 + AT_rich Low_complexity Low_complexity 1 30 0 1 1191 604 221 39 0 chr11 79496269 79496396 -42347460 - B1_Mur1 SINE Alu -5 144 13 1 1191 297 226 0 0 chr11 79497411 79497526 -42346330 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1191 210 37 0 0 chr11 79497690 79497717 -42346139 + (C)n Simple_repeat Simple_repeat 1 27 0 1 1191 710 149 294 17 chr11 79499133 79499310 -42344546 + URR1A DNA MER1_type 1 226 0 1 1191 860 144 18 24 chr11 79500808 79500972 -42342884 - URR1A DNA MER1_type -6 220 58 1 1191 489 76 0 0 chr11 79501864 79501930 -42341926 + (TCCC)n Simple_repeat Simple_repeat 1 66 0 2 1191 864 175 14 0 chr11 79501931 79502074 -42341782 - B1_Mus2 SINE Alu -2 145 1 3 1191 218 102 0 58 chr11 79502076 79502128 -42341728 + T-rich Low_complexity Low_complexity 1 49 0 4 1191 1295 34 0 0 chr11 79502128 79502275 -42341581 - B1_Mus2 SINE Alu 0 147 1 5 1191 662 137 17 0 chr11 79502601 79502718 -42341138 + (CATA)n Simple_repeat Simple_repeat 2 120 0 6 1191 588 179 42 8 chr11 79502718 79502836 -42341020 - B1_Mur2 SINE Alu -7 142 21 7 1191 462 248 110 16 chr11 79503305 79503432 -42340424 + ID_B1 SINE B4 86 224 0 8 1191 1327 73 23 0 chr11 79503537 79503714 -42340142 - B2_Mm2 SINE B2 -14 181 1 9 1191 258 268 70 0 chr11 79508571 79508642 -42335214 - MER53 DNA hAT -23 170 95 1 1191 232 317 36 12 chr11 79508662 79508745 -42335111 - MER5B DNA MER1_type -68 110 26 1 1191 205 354 31 23 chr11 79509168 79509298 -42334558 - MER5B DNA MER1_type -39 139 9 1 1191 416 328 0 0 chr11 79511954 79512070 -42331786 + PB1D9 SINE Alu 2 117 -3 1 1191 574 202 65 0 chr11 79512078 79512202 -42331654 - B1_Mur1 SINE Alu -2 147 16 1 1191 1766 16 0 0 chr11 79512274 79512467 -42331389 + B2_Mm1a SINE B2 1 193 0 1 1191 316 164 18 0 chr11 79512874 79512929 -42330927 - B3 SINE B2 -159 57 2 1 1191 749 203 6 51 chr11 79513592 79513748 -42330108 + B1_Mur1 SINE Alu 1 149 0 1 1191 210 287 41 50 chr11 79513886 79514007 -42329849 - B4A SINE B4 -138 154 35 1 1191 256 267 61 114 chr11 79514478 79514561 -42329295 + PB1D7 SINE Alu 13 95 -25 1 1191 288 77 0 0 chr11 79514561 79514600 -42329256 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1191 256 267 61 114 chr11 79514600 79514630 -42329226 + PB1D7 SINE Alu 96 120 0 1 1191 392 198 110 0 chr11 79515106 79515197 -42328659 - PB1D10 SINE Alu -16 101 1 2 1191 323 210 231 15 chr11 79515606 79515843 -42328013 + L1MB1 LINE L1 5289 5598 -573 2 1191 429 54 0 0 chr11 79515845 79515901 -42327955 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1191 344 244 98 57 chr11 79515901 79516023 -42327833 + B1_Mur1 SINE Alu 23 149 0 2 1191 330 324 101 0 chr11 79516219 79516367 -42327489 + L1MB1 LINE L1 5877 6039 -132 2 1191 253 227 29 43 chr11 79516373 79516442 -42327414 + PB1 SINE Alu 58 125 -2 2 1191 698 249 10 95 chr11 79516459 79516659 -42327197 + B3 SINE B2 27 209 -7 2 1191 220 336 29 9 chr11 79516695 79516800 -42327056 + BC1_Mm scRNA scRNA 1 107 -45 2 1191 745 162 37 24 chr11 79516955 79517119 -42326737 + B2_Mm2 SINE B2 1 166 -29 2 1191 22 35 0 0 chr11 79517361 79517390 -42326466 + AT_rich Low_complexity Low_complexity 1 29 0 2 1191 560 253 103 23 chr11 79517399 79517574 -42326282 + ID_B1 SINE B4 1 193 -99 2 1191 646 0 0 0 chr11 79518151 79518223 -42325633 + tRNA-Thr-ACG tRNA tRNA 1 72 -3 3 1191 392 265 64 64 chr11 79518779 79518904 -42324952 - B1_Mur2 SINE Alu -1 148 24 3 1191 236 357 40 73 chr11 79518904 79518930 -42324926 - ID_B1 SINE B4 -1 223 78 3 1191 794 250 6 0 chr11 79519768 79519847 -42324009 + ID SINE ID 2 81 -143 3 1191 333 324 45 0 chr11 79519847 79519958 -42323898 + PB1D10 SINE Alu 1 116 -1 3 1191 896 152 86 8 chr11 79520693 79520888 -42322968 - B2_Mm2 SINE B2 -1 215 7 3 1191 615 256 138 5 chr11 79521278 79521474 -42322382 - ID_B1 SINE B4 -2 222 1 3 1191 315 0 0 0 chr11 79521604 79521639 -42322217 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1191 1131 67 0 0 chr11 79521640 79521775 -42322081 - B1_Mus2 SINE Alu -12 135 1 3 1191 254 179 18 0 chr11 79522084 79522140 -42321716 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1191 416 267 14 51 chr11 79522193 79522331 -42321525 + ID_B1 SINE B4 87 219 -5 4 1191 343 300 0 0 chr11 79522339 79522419 -42321437 + ID2 SINE ID 2 81 -2 4 1191 189 94 0 0 chr11 79523044 79523076 -42320780 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1191 22 80 0 0 chr11 79524707 79524757 -42319099 + GC_rich Low_complexity Low_complexity 1 50 0 4 1191 477 0 0 0 chr11 79527054 79527107 -42316749 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 4 1191 700 212 196 0 chr11 79527667 79527846 -42316010 - B3 SINE B2 0 216 3 4 1191 211 218 0 49 chr11 79528733 79528815 -42315041 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 4 1191 299 292 0 0 chr11 79528815 79528880 -42314976 - RSINE1 SINE B4 -75 90 26 4 1191 204 91 0 0 chr11 79529374 79529387 -42314469 + (T)n Simple_repeat Simple_repeat 1 13 0 4 1191 1514 48 37 0 chr11 79529387 79529574 -42314282 - B2_Mm2 SINE B2 0 195 2 4 1191 204 91 0 0 chr11 79529574 79529593 -42314263 + (T)n Simple_repeat Simple_repeat 1 19 0 5 1191 453 277 56 21 chr11 79530267 79530411 -42313445 + RSINE1 SINE B4 4 152 -13 5 1191 243 0 0 0 chr11 79530461 79530488 -42313368 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1191 326 136 0 17 chr11 79531188 79531248 -42312608 - B1F1 SINE Alu 0 149 91 5 1191 686 221 0 0 chr11 79533050 79533172 -42310684 + RSINE1 SINE B4 3 124 -41 5 1191 408 20 0 0 chr11 79533192 79533241 -42310615 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1191 30 0 0 0 chr11 79533342 79533372 -42310484 + AT_rich Low_complexity Low_complexity 1 30 0 5 1191 569 285 101 38 chr11 79533997 79534314 -42309542 + MER46C DNA MER2_type 1 337 -1 5 1191 1530 68 16 0 chr11 79534684 79534876 -42308980 - B2_Mm2 SINE B2 0 195 1 5 1191 675 169 14 24 chr11 79535092 79535234 -42308622 + B1_Mur4 SINE Alu 2 149 -1 5 1191 1151 61 0 39 chr11 79535239 79535392 -42308464 + B1_Mus2 SINE Alu 1 147 0 6 1191 216 0 0 0 chr11 79535392 79535416 -42308440 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1191 964 207 69 0 chr11 79535460 79535648 -42308208 - B3 SINE B2 -13 203 3 6 1191 575 284 27 13 chr11 79535654 79535804 -42308052 + MER47B DNA MER2_type 96 247 -171 6 1191 367 320 33 13 chr11 79538402 79538554 -42305302 - RSINE1 SINE B4 -8 157 3 6 1191 330 250 136 18 chr11 79539035 79539145 -42304711 - B3A SINE B2 -75 123 1 6 1191 307 308 174 8 chr11 79539161 79539282 -42304574 - B1F SINE Alu -8 141 1 6 1191 274 305 0 24 chr11 79539216 79539300 -42304556 - B4A SINE B4 -141 151 70 6 1191 422 125 0 101 chr11 79539304 79539424 -42304432 - B1_Mur3 SINE Alu 0 149 50 6 1191 218 189 0 0 chr11 79540470 79540507 -42303349 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 6 1191 328 218 77 29 chr11 79540510 79540614 -42303242 - PB1D10 SINE Alu -7 113 5 7 1191 577 201 139 6 chr11 79541190 79541355 -42302501 + B4A SINE B4 93 279 -13 7 1191 350 191 29 14 chr11 79541360 79541429 -42302427 - PB1D9 SINE Alu -48 72 3 7 1191 260 326 33 11 chr11 79541429 79541459 -42302397 - B4 SINE B4 -203 89 58 7 1191 1442 60 11 0 chr11 79541752 79541935 -42301921 + B2_Mm1t SINE B2 2 186 -7 7 1191 211 194 129 43 chr11 79542475 79542545 -42301311 - MIRm SINE MIR -164 112 37 7 1191 1002 171 6 17 chr11 79542611 79542789 -42301067 - B3 SINE B2 -40 176 1 7 1191 355 238 24 24 chr11 79544300 79544382 -42299474 - ID4 SINE ID -1 82 1 7 1191 432 274 17 17 chr11 79544382 79544497 -42299359 - PB1D10 SINE Alu -2 115 1 7 1191 283 229 0 16 chr11 79544700 79544762 -42299094 + MLT1K LTR MaLR 113 173 -422 7 1191 306 296 128 9 chr11 79544804 79544913 -42298943 + MLT1K LTR MaLR 297 418 -177 7 1191 290 328 23 8 chr11 79546058 79546187 -42297669 - ID_B1 SINE B4 -3 221 91 8 1191 1262 27 0 7 chr11 79546272 79546419 -42297437 - B1_Mus2 SINE Alu 0 147 2 8 1191 464 261 0 32 chr11 79546420 79546543 -42297313 - RSINE1 SINE B4 -44 121 3 8 1191 1838 168 83 48 chr11 79546790 79547185 -42296671 + MTC LTR MaLR 1 409 -12 8 1191 410 312 55 0 chr11 79547414 79547542 -42296314 - ID_B1 SINE B4 -3 221 87 8 1191 258 269 15 0 chr11 79548009 79548076 -42295780 + ID4 SINE ID 3 70 -13 8 1191 277 329 0 0 chr11 79548191 79548264 -42295592 - ID2 SINE ID -9 74 2 8 1191 1419 161 141 32 chr11 79548356 79548696 -42295160 + ORR1C2 LTR MaLR 8 384 0 8 1191 343 292 39 71 chr11 79548743 79548898 -42294958 + MER45R DNA Tip100 1 150 -1431 8 1191 408 243 117 0 chr11 79549408 79549511 -42294345 + PB1D7 SINE Alu 5 119 -1 8 1191 258 235 29 0 chr11 79549516 79549584 -42294272 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 9 1191 405 102 0 0 chr11 79549663 79549722 -42294134 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1191 351 0 0 0 chr11 79549750 79549789 -42294067 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1191 929 302 52 75 chr11 79549808 79550384 -42293472 + L1MC5 LINE L1 7248 7810 -151 9 1191 488 216 0 49 chr11 79550477 79550579 -42293277 + PB1D10 SINE Alu 21 117 0 9 1191 232 328 0 0 chr11 79551912 79551976 -42291880 + CT-rich Low_complexity Low_complexity 3 66 0 9 1191 519 159 168 0 chr11 79553196 79553309 -42290547 - URR1B DNA MER1_type 0 225 94 9 1191 1197 41 7 13 chr11 79553309 79553458 -42290398 + B1_Mus1 SINE Alu 1 148 0 9 1191 553 259 76 165 chr11 79553750 79553948 -42289908 - B4 SINE B4 -5 287 133 9 1191 711 0 0 102 chr11 79553948 79554125 -42289731 + (TCC)n Simple_repeat Simple_repeat 3 161 0 9 1191 553 259 76 165 chr11 79554125 79554241 -42289615 - B4 SINE B4 -160 132 2 9 1191 2241 123 15 6 chr11 79554993 79555327 -42288529 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1191 6375 61 13 12 chr11 79555329 79556178 -42287678 - IAPEz-int LTR ERVK -2 6479 5630 1 1191 12809 52 83 18 chr11 79556164 79559047 -42284809 - IAPEz-int LTR ERVK -3405 3076 8 1 1191 2224 123 15 6 chr11 79559047 79559381 -42284475 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1192 258 259 62 0 chr11 79560911 79561025 -42282831 + L1MA4 LINE L1 5874 6000 -180 1 1192 784 225 53 0 chr11 79561143 79561294 -42282562 + RSINE1 SINE B4 3 161 -4 1 1192 222 118 0 0 chr11 79561330 79561364 -42282492 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1192 1190 43 0 0 chr11 79561923 79562061 -42281795 + B1_Mm SINE Alu 1 138 -9 1 1192 261 0 0 0 chr11 79562137 79562166 -42281690 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1192 298 295 0 49 chr11 79562199 79562281 -42281575 + MLT1D LTR MaLR 4 81 -424 1 1192 272 171 128 26 chr11 79562295 79562373 -42281483 - MTEa LTR MaLR -24 355 270 1 1192 1092 221 36 122 chr11 79562499 79562828 -42281028 - MTEa LTR MaLR -76 303 3 1 1192 328 345 34 120 chr11 79562890 79563140 -42280716 - ORR1E LTR MaLR -6 353 136 1 1192 1645 196 80 58 chr11 79563140 79563552 -42280304 - MTC LTR MaLR 0 421 1 1 1192 328 345 34 120 chr11 79563552 79563627 -42280229 - ORR1E LTR MaLR -224 135 56 1 1192 414 0 0 0 chr11 79563968 79564014 -42279842 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1192 639 0 0 0 chr11 79564207 79564278 -42279578 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 1 1192 481 248 211 0 chr11 79564497 79564630 -42279226 - RSINE1 SINE B4 -2 163 3 1 1192 1838 138 56 86 chr11 79564868 79565241 -42278615 + ORR1B1 LTR MaLR 33 394 0 1 1192 402 281 64 88 chr11 79565452 79565577 -42278279 - B1F1 SINE Alu -5 122 1 1 1192 260 326 10 21 chr11 79565497 79565594 -42278262 - B4 SINE B4 -127 165 70 1 1192 271 206 47 16 chr11 79565683 79565747 -42278109 + MIRb SINE MIR 117 182 -86 1 1192 278 192 0 0 chr11 79565812 79565864 -42277992 - ID4 SINE ID -31 52 1 1 1192 622 171 19 0 chr11 79567547 79567652 -42276204 - PB1D10 SINE Alu -10 107 1 1 1192 336 143 0 0 chr11 79567662 79567718 -42276138 + (TCC)n Simple_repeat Simple_repeat 2 57 0 1 1192 1192 62 0 0 chr11 79567733 79567877 -42275979 - B1_Mus1 SINE Alu 0 148 5 1 1192 805 220 0 0 chr11 79567888 79568029 -42275827 - ID_B1 SINE B4 -3 221 81 1 1192 307 346 73 13 chr11 79568148 79568485 -42275371 + L1MC4a LINE L1 5536 5887 -1995 1 1192 222 273 0 0 chr11 79568525 79568580 -42275276 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1192 362 223 31 31 chr11 79568580 79568677 -42275179 + HAL1-3A_ME LINE L1 1973 2069 -789 1 1192 746 234 7 7 chr11 79568783 79568921 -42274935 + RSINE1 SINE B4 3 140 -25 1 1192 446 75 15 0 chr11 79568923 79568990 -42274866 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1192 417 39 0 0 chr11 79568993 79569044 -42274812 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1192 837 214 0 0 chr11 79569792 79569932 -42273924 + B1_Mur2 SINE Alu 3 142 -7 1 1192 305 336 76 0 chr11 79570058 79570177 -42273679 - MLT1I LTR MaLR -244 167 40 1 1192 276 77 0 0 chr11 79570473 79570512 -42273344 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1192 418 237 30 31 chr11 79570512 79570624 -42273232 - B3A SINE B2 -22 176 50 1 1192 1845 191 60 24 chr11 79570624 79571004 -42272852 - ORR1B1 LTR MaLR 0 394 1 1 1192 240 229 0 0 chr11 79570969 79571017 -42272839 - B3A SINE B2 -146 52 5 1 1192 348 324 42 21 chr11 79571057 79571199 -42272657 - RSINE1 SINE B4 -18 147 3 1 1192 402 268 62 0 chr11 79571596 79571708 -42272148 - PB1D7 SINE Alu 0 120 2 1 1192 309 311 33 0 chr11 79571719 79571809 -42272047 - ID_B1 SINE B4 -5 219 127 1 1192 253 255 194 19 chr11 79571809 79571827 -42272029 - B1_Mur2 SINE Alu -5 144 18 1 1192 275 312 124 73 chr11 79571961 79572020 -42271836 + B4A SINE B4 2 61 -231 1 1192 806 216 54 5 chr11 79572020 79572225 -42271631 + B3 SINE B2 1 215 -1 1 1192 373 288 76 62 chr11 79572225 79572464 -42271392 + RSINE1 SINE B4 62 273 -19 1 1192 1227 48 0 20 chr11 79572483 79572633 -42271223 - B1_Mm SINE Alu 0 147 1 1 1192 313 149 0 0 chr11 79572776 79572823 -42271033 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 1 1192 594 251 0 0 chr11 79572832 79573011 -42270845 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1192 357 159 29 0 chr11 79573013 79573082 -42270774 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1192 200 228 0 17 chr11 79573082 79573140 -42270716 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1192 503 328 70 33 chr11 79573148 79573524 -42270332 + L1M5 LINE L1 5175 5566 -607 1 1192 381 22 0 0 chr11 79573785 79573831 -42270025 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1192 887 198 19 0 chr11 79574128 79574285 -42269571 - B3 SINE B2 0 216 57 1 1192 205 320 192 39 chr11 79574432 79574536 -42269320 + L3 LINE CR1 2810 2929 -1560 1 1192 636 245 6 25 chr11 79574603 79574766 -42269090 - RSINE1 SINE B4 -4 161 2 1 1192 2145 74 60 0 chr11 79574816 79575114 -42268742 + ORR1A2 LTR MaLR 1 316 -11 1 1192 473 371 68 12 chr11 79575397 79575645 -42268211 - MLT1I LTR MaLR -3 408 147 1 1192 557 185 36 29 chr11 79576332 79576471 -42267385 + B1F SINE Alu 2 141 -8 1 1192 230 373 0 0 chr11 79576487 79576546 -42267310 + ID4 SINE ID 3 61 -22 1 1192 819 176 0 0 chr11 79576638 79576769 -42267087 + B1_Mur4 SINE Alu 19 149 -1 1 1192 195 222 0 0 chr11 79576961 79577006 -42266850 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 1192 330 67 0 0 chr11 79577869 79577914 -42265942 + (TCC)n Simple_repeat Simple_repeat 1 45 0 1 1192 441 273 76 14 chr11 79577990 79578135 -42265721 + MER34A LTR ERV1 1 154 -417 1 1192 260 343 150 0 chr11 79578336 79578476 -42265380 + MER34A LTR ERV1 407 567 -20 1 1192 591 288 25 6 chr11 79578601 79578758 -42265098 + RSINE1 SINE B4 6 165 0 1 1192 471 274 26 17 chr11 79579316 79579431 -42264425 + B4A SINE B4 155 270 -22 1 1192 381 93 0 0 chr11 79579431 79579485 -42264371 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1192 264 193 121 88 chr11 79579638 79579729 -42264127 - PB1D10 SINE Alu -13 104 11 1 1192 430 242 34 10 chr11 79579742 79579839 -42264017 - PB1D10 SINE Alu -38 111 10 1 1192 369 0 0 0 chr11 79579878 79579919 -42263937 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1192 1989 122 27 57 chr11 79579949 79580280 -42263576 + ORR1A4 LTR MaLR 1 321 -8 1 1192 1031 176 148 70 chr11 79580284 79580703 -42263153 + ORR1A4-int LTR MaLR 1 364 -1599 1 1192 848 87 188 0 chr11 79580697 79580835 -42263021 + B2_Mm1t SINE B2 16 179 -14 1 1192 396 220 26 78 chr11 79580882 79581035 -42262821 + B2_Mm2 SINE B2 47 191 -4 1 1192 1697 220 45 27 chr11 79581029 79581473 -42262383 + ORR1A4-int LTR MaLR 349 800 -1163 1 1192 805 174 0 104 chr11 79581398 79581552 -42262304 + MT2B LTR ERVL 155 292 -309 1 1192 2140 147 27 60 chr11 79581507 79581955 -42261901 + ORR1A4-int LTR MaLR 719 1151 -812 1 1192 4095 163 73 59 chr11 79581958 79583086 -42260770 - RLTR25B LTR ERVK 0 1103 1 1 1192 3824 131 43 79 chr11 79583086 79584007 -42259849 + ORR1A4-int LTR MaLR 1061 1772 -191 1 1192 2326 101 6 58 chr11 79584007 79584354 -42259502 + ORR1A4 LTR MaLR 1 329 0 1 1192 796 232 13 0 chr11 79584499 79584650 -42259206 + RSINE1 SINE B4 10 162 -3 1 1192 900 163 20 0 chr11 79585466 79585613 -42258243 - B1_Mur4 SINE Alu 0 150 1 1 1192 497 263 133 55 chr11 79585769 79585950 -42257906 + B3A SINE B2 2 196 -2 1 1192 3013 3 0 0 chr11 79585958 79586287 -42257569 + L1Md_A LINE L1 6254 6582 0 1 1192 194 0 39 0 chr11 79586312 79586338 -42257518 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1192 450 301 44 55 chr11 79586594 79586777 -42257079 + B4 SINE B4 2 182 -110 1 1192 180 0 0 0 chr11 79586943 79586963 -42256893 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1192 327 194 0 0 chr11 79588224 79588332 -42255524 + CT-rich Low_complexity Low_complexity 1 108 0 1 1192 885 273 10 0 chr11 79588396 79588594 -42255262 + MLT1A0 LTR MaLR 164 363 -2 1 1192 3845 222 51 5 chr11 79588807 79589673 -42254183 - RCHARR1 DNA MER1_type 0 974 69 1 1192 1392 89 0 64 chr11 79589687 79589891 -42253965 - B2_Mm2 SINE B2 -4 191 1 1 1192 516 259 70 64 chr11 79589943 79590100 -42253756 + RSINE1 SINE B4 4 161 -4 1 1192 404 296 9 0 chr11 79590175 79590290 -42253566 - PB1D10 SINE Alu -1 116 1 1 1192 325 336 92 14 chr11 79591590 79591732 -42252124 - MER20 DNA MER1_type -24 195 43 1 1192 405 0 0 0 chr11 79591847 79591892 -42251964 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1192 678 284 39 0 chr11 79591895 79592050 -42251806 - B3A SINE B2 -37 161 1 1 1192 199 384 53 27 chr11 79592644 79592794 -42251062 + MIRc SINE MIR 61 214 -54 1 1192 612 206 0 0 chr11 79594051 79594182 -42249674 + (CATA)n Simple_repeat Simple_repeat 2 132 0 1 1192 227 333 0 47 chr11 79594796 79594881 -42248975 - MER82 DNA MER2_type -3 650 570 1 1192 265 306 61 10 chr11 79594927 79595026 -42248830 + MLT1N2 LTR MaLR 418 521 -41 1 1192 755 231 41 0 chr11 79595101 79595248 -42248608 + MTEa LTR MaLR 18 170 -209 1 1192 261 0 0 0 chr11 79595266 79595295 -42248561 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1192 1246 41 0 0 chr11 79595295 79595434 -42248422 - B1_Mus1 SINE Alu -8 140 2 1 1192 2128 186 40 8 chr11 79595434 79595830 -42248026 - MTC LTR MaLR -9 412 4 1 1192 461 331 13 32 chr11 79595830 79595985 -42247871 + B4A SINE B4 20 171 -121 1 1192 748 245 36 36 chr11 79596052 79596182 -42247674 + MTEa LTR MaLR 155 291 -88 1 1192 3002 35 0 3 chr11 79596182 79596529 -42247327 - ORR1A1 LTR MaLR 0 346 1 1 1192 748 245 36 36 chr11 79596529 79596622 -42247234 + MTEa LTR MaLR 292 378 -1 1 1192 297 344 35 62 chr11 79596651 79596877 -42246979 - L2c LINE L2 -228 3159 2940 1 1192 747 273 21 68 chr11 79598072 79598308 -42245548 + B4A SINE B4 2 226 -66 1 1192 414 0 0 0 chr11 79598317 79598363 -42245493 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1192 1650 274 84 18 chr11 79598448 79599076 -42244780 + Lx9 LINE L1 6960 7629 -15 1 1192 304 192 11 46 chr11 79599257 79599341 -42244515 + B1F2 SINE Alu 1 84 -33 1 1192 1488 88 36 9 chr11 79599383 79599602 -42244254 + ORR1A2 LTR MaLR 103 327 0 1 1192 232 353 29 19 chr11 79599857 79599961 -42243895 + MLT1M LTR MaLR 91 195 -477 2 1192 2129 157 119 5 chr11 79599963 79600341 -42243515 + MTC LTR MaLR 1 421 0 2 1192 1929 136 22 10 chr11 79600622 79600934 -42242922 + Lx4A LINE L1 6742 7057 -1 2 1192 599 314 91 40 chr11 79600954 79601449 -42242407 + L1MEf LINE L1 1137 1656 -4544 2 1192 376 302 124 72 chr11 79601959 79602436 -42241420 + LTR50 LTR ERVL 36 520 0 2 1192 181 280 36 99 chr11 79603606 79603717 -42240139 + L2c LINE L2 3052 3155 -232 2 1192 230 263 180 10 chr11 79604171 79604271 -42239585 + MIRb SINE MIR 58 174 -94 2 1192 883 312 104 34 chr11 79604636 79604830 -42239026 - MLT1D LTR MaLR -28 477 266 2 1192 1263 108 0 0 chr11 79604830 79605330 -42238526 + (CA)n Simple_repeat Simple_repeat 1 500 0 2 1192 883 312 104 34 chr11 79605330 79605575 -42238281 - MLT1D LTR MaLR -240 265 3 2 1192 470 210 205 23 chr11 79605975 79606146 -42237710 + B4 SINE B4 1 202 -90 2 1192 555 303 40 0 chr11 79606610 79606762 -42237094 + RSINE1 SINE B4 4 161 -4 2 1192 213 196 0 0 chr11 79606767 79606818 -42237038 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2 1192 315 285 3 51 chr11 79607355 79607491 -42236365 - MIRc SINE MIR -64 204 83 2 1192 642 110 163 41 chr11 79608328 79608451 -42235405 + B1_Mur4 SINE Alu 2 139 -11 2 1192 371 0 61 0 chr11 79608451 79608500 -42235356 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 2 1192 1133 181 34 10 chr11 79608503 79608709 -42235147 + B3 SINE B2 5 215 -1 2 1192 245 223 16 41 chr11 79608757 79608852 -42235004 + B4 SINE B4 3 93 -72 2 1192 472 240 0 39 chr11 79608974 79609078 -42234778 + RSINE1 SINE B4 5 104 -61 2 1192 342 0 0 0 chr11 79609107 79609145 -42234711 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1192 396 40 0 0 chr11 79610295 79610345 -42233511 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1192 261 299 77 6 chr11 79610349 79610517 -42233339 + L1MEe LINE L1 505 684 -4170 2 1192 546 251 109 122 chr11 79610789 79611076 -42232780 + B4 SINE B4 31 278 -14 2 1192 899 174 0 0 chr11 79611191 79611329 -42232527 - B1_Mur2 SINE Alu -1 148 11 2 1192 504 187 244 6 chr11 79611522 79611678 -42232178 + ID_B1 SINE B4 1 193 -31 2 1192 394 184 11 65 chr11 79612318 79612411 -42231445 + B4 SINE B4 2 89 -203 2 1192 309 333 67 0 chr11 79612446 79612551 -42231305 + RSINE1 SINE B4 3 114 -51 2 1192 1941 29 4 0 chr11 79612539 79612779 -42231077 + MT-int LTR MaLR 785 1025 -73 2 1192 440 171 66 0 chr11 79613031 79613107 -42230749 + RSINE1 SINE B4 2 82 -83 2 1192 288 254 109 29 chr11 79613107 79613142 -42230714 + B3 SINE B2 1 106 -89 2 1192 237 163 204 0 chr11 79613148 79613197 -42230659 + RSINE1 SINE B4 72 130 -35 2 1192 479 200 52 14 chr11 79613315 79613433 -42230423 + B1F SINE Alu 2 117 0 2 1192 268 197 70 0 chr11 79613479 79613550 -42230306 + L1M LINE L1 5331 5406 -773 2 1192 329 341 0 0 chr11 79613619 79613748 -42230108 + L1MA10 LINE L1 6199 6327 -7 2 1192 320 358 53 29 chr11 79613939 79614109 -42229747 + L1M5 LINE L1 4820 4993 -1153 2 1192 335 202 124 3 chr11 79614109 79614209 -42229647 + ID4_ SINE ID 1 108 -44 2 1192 2115 125 21 6 chr11 79614347 79614684 -42229172 + RLTR15 LTR ERVK 1 342 -17 2 1192 733 313 62 29 chr11 79614659 79614935 -42228921 + B4A SINE B4 8 292 0 2 1192 662 196 68 0 chr11 79614971 79615104 -42228752 + B1_Mur2 SINE Alu 1 142 -7 2 1192 702 244 102 28 chr11 79615139 79615316 -42228540 + B3 SINE B2 24 213 -3 2 1192 489 176 62 44 chr11 79615486 79615584 -42228272 + PB1D10 SINE Alu 1 103 -14 2 1192 207 0 0 0 chr11 79615584 79615607 -42228249 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 2 1192 489 176 62 44 chr11 79615607 79615621 -42228235 + PB1D10 SINE Alu 104 115 -2 2 1192 180 379 0 33 chr11 79616898 79616988 -42226868 + MIRb SINE MIR 120 206 -62 2 1192 965 216 52 10 chr11 79616992 79617184 -42226672 + ID_B1 SINE B4 4 203 -21 2 1192 387 0 0 0 chr11 79617184 79617227 -42226629 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1192 186 410 25 8 chr11 79617614 79617732 -42226124 + MIRb SINE MIR 80 199 -69 2 1192 305 298 17 50 chr11 79617915 79618035 -42225821 - B1F SINE Alu -29 120 5 2 1192 229 301 219 29 chr11 79617940 79618077 -42225779 - ID_B1 SINE B4 -22 202 40 2 1192 289 279 61 26 chr11 79618078 79618192 -42225664 - MIR3 SINE MIR -84 124 7 2 1192 22 0 0 0 chr11 79618303 79618325 -42225531 + AT_rich Low_complexity Low_complexity 1 22 0 2 1192 1894 115 16 132 chr11 79618465 79618837 -42225019 - ORR1A4 LTR MaLR 0 329 1 2 1192 201 74 0 0 chr11 79618907 79618934 -42224922 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 2 1192 187 260 93 27 chr11 79619352 79619427 -42224429 + MIRc SINE MIR 69 148 -120 2 1192 240 298 71 12 chr11 79620258 79620343 -42223513 - MIR SINE MIR -86 122 33 2 1192 739 174 71 57 chr11 79621103 79621243 -42222613 - B1_Mur4 SINE Alu -8 142 1 2 1192 371 244 98 0 chr11 79621243 79621325 -42222531 - ID_B1 SINE B4 0 224 135 2 1192 1382 251 69 6 chr11 79621351 79621700 -42222156 + MTEa LTR MaLR 1 371 -8 2 1192 608 271 227 18 chr11 79621870 79622213 -42221643 + L1MCa LINE L1 48 462 -6046 2 1192 643 230 19 16 chr11 79622215 79622376 -42221480 + B3 SINE B2 2 167 -26 2 1192 936 144 23 0 chr11 79622382 79622514 -42221342 + B1_Mur2 SINE Alu 2 136 -13 2 1192 295 230 96 56 chr11 79622524 79622657 -42221199 + MLT1A1 LTR MaLR 272 395 -13 2 1192 334 265 53 0 chr11 79622817 79622949 -42220907 + L1MCa LINE L1 1664 1802 -4706 2 1192 193 312 62 10 chr11 79623139 79623236 -42220620 - MIRc SINE MIR -152 116 15 2 1192 222 105 0 0 chr11 79623482 79623520 -42220336 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1192 704 43 11 0 chr11 79623520 79623612 -42220244 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1192 533 225 28 42 chr11 79624040 79624184 -42219672 + B1F1 SINE Alu 1 142 -7 2 1192 1142 239 22 36 chr11 79624199 79624473 -42219383 + B4A SINE B4 1 270 -22 2 1192 182 220 17 0 chr11 79624495 79624554 -42219302 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1192 263 262 16 0 chr11 79624580 79624641 -42219215 + ID4_ SINE ID 2 63 -20 2 1192 186 43 0 0 chr11 79624713 79624736 -42219120 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1192 429 307 10 0 chr11 79624932 79625033 -42218823 + RSINE1 SINE B4 58 159 -6 2 1192 1241 262 114 55 chr11 79625052 79625608 -42218248 + MER44C DNA MER2_type 68 730 -3 2 1192 498 250 40 60 chr11 79625709 79625726 -42218130 + ID_B1 SINE B4 78 219 -1 2 1192 831 156 16 0 chr11 79625726 79625854 -42218002 + B1_Mur3 SINE Alu 15 144 -5 2 1192 1095 116 0 0 chr11 79625864 79626079 -42217777 + (GAA)n Simple_repeat Simple_repeat 1 215 0 2 1192 259 252 76 25 chr11 79626204 79626321 -42217535 + Charlie1 DNA MER1_type 808 930 -1851 2 1192 274 309 73 21 chr11 79626321 79626417 -42217439 + B1F SINE Alu 1 101 -48 2 1192 183 156 0 0 chr11 79626495 79626527 -42217329 + GA-rich Low_complexity Low_complexity 4 35 0 2 1192 584 328 43 5 chr11 79626755 79626939 -42216917 + MLT1A0 LTR MaLR 4 194 -171 2 1192 327 146 0 0 chr11 79627000 79627055 -42216801 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 2 1192 1232 54 0 0 chr11 79627055 79627203 -42216653 - B1_Mus1 SINE Alu 0 148 1 2 1192 207 0 0 0 chr11 79627367 79627390 -42216466 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1192 305 339 95 5 chr11 79627830 79628020 -42215836 + L1M5 LINE L1 5442 5648 -592 2 1192 321 248 54 90 chr11 79628441 79628552 -42215304 - PB1D10 SINE Alu 0 117 11 2 1192 246 264 56 0 chr11 79628922 79628994 -42214862 - MER94 DNA AcHobo -27 107 32 2 1192 540 288 24 78 chr11 79629322 79629488 -42214368 + B3A SINE B2 1 157 -41 2 1192 270 0 0 0 chr11 79629492 79629522 -42214334 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1192 21 0 0 0 chr11 79629522 79629543 -42214313 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 323 360 67 45 chr11 79629563 79629787 -42214069 + L1MEe LINE L1 1721 1949 -4217 2 1192 603 292 0 0 chr11 79629827 79629947 -42213909 - PB1D7 SINE Alu 0 120 1 2 1192 236 254 57 33 chr11 79629980 79630102 -42213754 + L1MEe LINE L1 2174 2298 -3848 2 1192 388 273 50 154 chr11 79630111 79630263 -42213593 + B3A SINE B2 1 157 -41 2 1192 333 102 0 0 chr11 79630263 79630322 -42213534 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 2 1192 388 273 50 154 chr11 79630322 79630390 -42213466 + B3A SINE B2 158 198 0 2 1192 941 203 65 69 chr11 79630409 79630626 -42213230 - B3 SINE B2 0 216 1 2 1192 378 0 0 0 chr11 79630745 79630787 -42213069 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1192 434 290 0 57 chr11 79630827 79630933 -42212923 - RSINE1 SINE B4 -8 157 58 2 1192 459 301 53 0 chr11 79630937 79631070 -42212786 - B4 SINE B4 -69 223 84 2 1192 4132 178 183 4 chr11 79631120 79631890 -42211966 + RMER1B Other Other 1 918 -148 2 1192 180 0 0 0 chr11 79631890 79631910 -42211946 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1192 4132 178 183 4 chr11 79631910 79632042 -42211814 + RMER1B Other Other 919 1063 -3 2 1192 415 343 83 18 chr11 79632101 79632318 -42211538 + L1MEe LINE L1 2789 3019 -3127 2 1192 1046 167 180 56 chr11 79632458 79632596 -42211260 + RMER17C LTR ERVK 39 184 -226 2 1192 1419 40 0 0 chr11 79632596 79632770 -42211086 + (TC)n Simple_repeat Simple_repeat 1 174 0 2 1192 1046 167 180 56 chr11 79632770 79632936 -42210920 + RMER17C LTR ERVK 185 380 -30 2 1192 498 33 0 0 chr11 79632938 79632998 -42210858 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 2 1192 458 274 161 0 chr11 79633055 79633241 -42210615 + B3 SINE B2 1 216 0 2 1192 1027 244 60 32 chr11 79633269 79633552 -42210304 + B4A SINE B4 1 291 -1 2 1192 5082 28 0 2 chr11 79633604 79634182 -42209674 - L1Md_F2 LINE L1 -12 6570 5994 3 1192 1023 135 206 0 chr11 79634300 79634470 -42209386 + B3 SINE B2 2 206 -10 3 1192 432 0 0 0 chr11 79634482 79634530 -42209326 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1192 243 0 0 0 chr11 79634530 79634556 -42209300 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 1192 257 254 133 37 chr11 79634604 79634739 -42209117 + L1ME3B LINE L1 5745 5892 -272 3 1192 251 54 27 0 chr11 79635475 79635512 -42208344 + (GGA)n Simple_repeat Simple_repeat 2 39 0 3 1192 659 63 32 0 chr11 79635510 79635605 -42208251 + (GAAAA)n Simple_repeat Simple_repeat 1 98 0 3 1192 322 194 27 116 chr11 79635800 79635946 -42207910 + L1ME3B LINE L1 5915 6047 -193 3 1192 649 226 0 0 chr11 79636254 79636369 -42207487 + ID_B1 SINE B4 86 200 -24 3 1192 183 42 0 0 chr11 79636383 79636407 -42207449 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 3 1192 342 80 0 0 chr11 79636418 79636468 -42207388 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1192 213 121 0 0 chr11 79637677 79637710 -42206146 + (GGA)n Simple_repeat Simple_repeat 1 33 0 3 1192 417 288 258 15 chr11 79637836 79638104 -42205752 - MLT1B LTR MaLR -57 333 1 3 1192 496 268 207 0 chr11 79638477 79638641 -42205215 + MTE2b LTR MaLR 60 257 -122 3 1192 272 203 57 14 chr11 79638653 79638723 -42205133 + MTE2b LTR MaLR 307 379 0 3 1192 314 265 31 79 chr11 79640202 79640329 -42203527 + MIRc SINE MIR 29 149 -119 3 1192 288 295 29 29 chr11 79640533 79640660 -42203196 - MIRc SINE MIR -114 162 34 3 1192 186 133 0 0 chr11 79641296 79641326 -42202530 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 3 1192 1105 209 114 133 chr11 79641453 79641829 -42202027 + ORR1D1 LTR MaLR 1 369 -5 3 1192 205 279 38 12 chr11 79641838 79641918 -42201938 + MIRb SINE MIR 162 243 -25 3 1192 428 295 139 110 chr11 79643132 79643478 -42200378 - ORR1E LTR MaLR -2 357 2 3 1192 390 222 0 0 chr11 79643550 79643622 -42200234 - ID4 SINE ID -9 74 3 3 1192 204 239 13 53 chr11 79644244 79644319 -42199537 - MIRc SINE MIR -195 73 2 3 1192 1038 231 58 91 chr11 79644663 79644992 -42198864 + MTEa LTR MaLR 25 342 -37 3 1192 1219 61 0 0 chr11 79644993 79645141 -42198715 - B1_Mus1 SINE Alu 0 148 1 3 1192 183 80 0 0 chr11 79645314 79645339 -42198517 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 3 1192 22 56 0 0 chr11 79646278 79646314 -42197542 + AT_rich Low_complexity Low_complexity 1 36 0 3 1192 213 154 0 0 chr11 79646689 79646728 -42197128 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1192 488 285 90 0 chr11 79646888 79647032 -42196824 - RSINE1 SINE B4 -6 159 3 3 1192 229 247 52 31 chr11 79647087 79647183 -42196673 + L1M5 LINE L1 5526 5623 -501 3 1192 363 121 0 0 chr11 79647691 79647749 -42196107 + (CCCCCT)n Simple_repeat Simple_repeat 5 62 0 3 1192 2176 58 4 7 chr11 79647783 79648102 -42195754 + L1_Mus1 LINE L1 6292 6567 0 3 1192 889 241 38 33 chr11 79648393 79648603 -42195253 + B4 SINE B4 1 211 -81 3 1192 733 199 30 0 chr11 79648601 79648732 -42195124 + B1_Mur1 SINE Alu 15 149 0 3 1192 873 231 55 20 chr11 79648761 79648960 -42194896 + B3 SINE B2 11 216 0 3 1192 222 37 0 0 chr11 79649066 79649093 -42194763 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1192 466 283 132 24 chr11 79649541 79649974 -42193882 + L1MA4A LINE L1 5472 5930 -370 3 1192 489 34 0 0 chr11 79649986 79650045 -42193811 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1192 266 216 40 13 chr11 79650045 79650120 -42193736 + (TATG)n Simple_repeat Simple_repeat 2 78 0 3 1192 346 242 93 21 chr11 79650121 79650218 -42193638 + L1MCa LINE L1 1901 2004 -4504 3 1192 695 254 77 0 chr11 79650399 79650568 -42193288 - B3A SINE B2 -15 183 2 3 1192 315 0 0 0 chr11 79650661 79650696 -42193160 + (CAGC)n Simple_repeat Simple_repeat 4 38 0 3 1192 300 53 0 0 chr11 79651582 79651620 -42192236 + (TCC)n Simple_repeat Simple_repeat 2 39 0 3 1192 553 245 24 65 chr11 79652240 79652410 -42191446 - RSINE1 SINE B4 -1 164 2 3 1192 239 293 0 0 chr11 79652451 79652509 -42191347 - ID_B1 SINE B4 -85 139 82 3 1192 366 252 50 10 chr11 79653113 79653213 -42190643 - PB1D10 SINE Alu -12 105 2 3 1192 328 248 34 11 chr11 79653236 79653341 -42190515 - MIR SINE MIR -103 173 61 3 1192 339 278 33 0 chr11 79653822 79653912 -42189944 - MIR SINE MIR -147 115 23 3 1192 483 299 75 0 chr11 79654156 79654290 -42189566 + RSINE1 SINE B4 2 145 -20 3 1192 387 60 0 0 chr11 79655992 79656042 -42187814 + (TCC)n Simple_repeat Simple_repeat 1 50 0 3 1192 331 364 28 102 chr11 79656951 79657275 -42186581 + MLT1K LTR MaLR 5 304 -291 3 1192 1490 58 11 0 chr11 79657312 79657501 -42186355 + B2_Mm1t SINE B2 1 191 -2 3 1192 235 305 108 47 chr11 79657507 79657655 -42186201 + MLT1K LTR MaLR 342 498 -112 3 1192 296 264 103 9 chr11 79658487 79658594 -42185262 + PB1D10 SINE Alu 1 117 0 3 1192 3533 25 2 0 chr11 79658770 79659165 -42184691 - MTA_Mm LTR MaLR 0 396 1 3 1192 9889 15 0 0 chr11 79659165 79660263 -42183593 - MTA_Mm-int LTR MaLR 0 1098 1 3 1192 3533 25 2 0 chr11 79660263 79660658 -42183198 - MTA_Mm LTR MaLR 0 396 1 3 1192 758 225 7 0 chr11 79661008 79661150 -42182706 + ID_B1 SINE B4 82 224 0 3 1192 415 288 61 66 chr11 79661719 79661916 -42181940 - B4A SINE B4 -80 212 17 3 1192 211 276 24 73 chr11 79661845 79661927 -42181929 - B3A SINE B2 -114 84 7 3 1192 391 239 24 128 chr11 79661928 79662053 -42181803 - PB1D10 SINE Alu -5 112 1 3 1192 585 211 0 0 chr11 79662180 79662313 -42181543 + (TG)n Simple_repeat Simple_repeat 1 133 0 3 1192 397 243 11 33 chr11 79662272 79662455 -42181401 + (TATG)n Simple_repeat Simple_repeat 1 179 0 3 1192 618 247 85 57 chr11 79662493 79662669 -42181187 - B4 SINE B4 -10 282 102 3 1192 234 111 0 182 chr11 79662647 79662702 -42181154 + RMER10B LTR ERVL 354 398 0 3 1192 309 296 153 23 chr11 79662707 79662883 -42180973 - MIRb SINE MIR -55 213 15 3 1192 710 218 81 37 chr11 79663087 79663359 -42180497 + L1MB3 LINE L1 5878 6161 -22 3 1192 871 150 43 0 chr11 79663373 79663513 -42180343 - B1_Mur4 SINE Alu 0 150 5 3 1192 632 193 8 40 chr11 79663515 79663639 -42180217 + ID_B1 SINE B4 104 223 -1 3 1192 208 323 62 0 chr11 79664242 79664307 -42179549 + MIRb SINE MIR 30 98 -170 3 1192 300 83 0 0 chr11 79664347 79664395 -42179461 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1192 1113 97 7 0 chr11 79664401 79664546 -42179310 - B1_Mus1 SINE Alu -1 147 2 3 1192 348 24 0 0 chr11 79664648 79664689 -42179167 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1192 2684 138 34 5 chr11 79664690 79665127 -42178729 + RLTR11B LTR ERVK 4 453 0 3 1192 316 189 175 134 chr11 79665127 79665151 -42178705 - B3A SINE B2 -17 181 160 3 1192 375 23 0 0 chr11 79665151 79665195 -42178661 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1192 316 189 175 134 chr11 79665195 79665341 -42178515 - B3A SINE B2 -39 159 4 3 1192 882 264 14 38 chr11 79665343 79665552 -42178304 - B4 SINE B4 -69 223 20 3 1192 267 122 0 0 chr11 79665564 79665613 -42178243 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 3 1192 1201 68 0 20 chr11 79665613 79665763 -42178093 - B1_Mus2 SINE Alu 0 147 1 3 1192 776 254 91 30 chr11 79666085 79666349 -42177507 + B4A SINE B4 12 291 -1 3 1192 435 211 104 19 chr11 79666454 79666560 -42177296 - PB1D10 SINE Alu 0 117 3 3 1192 230 328 0 15 chr11 79667447 79667512 -42176344 + MIR SINE MIR 106 169 -93 3 1192 281 253 196 62 chr11 79668360 79668457 -42175399 - PB1D10 SINE Alu -7 110 1 3 1192 920 162 0 20 chr11 79669307 79669458 -42174398 - B1_Mur2 SINE Alu 0 149 2 3 1192 265 231 65 37 chr11 79670001 79670109 -42173747 - L1MC4 LINE L1 -1 8041 7931 3 1192 371 305 200 0 chr11 79670502 79670797 -42173059 - L1MC4 LINE L1 -931 7111 6758 3 1192 3305 43 8 0 chr11 79670965 79671358 -42172498 - MTA_Mm LTR MaLR 0 396 1 3 1192 621 180 203 20 chr11 79671538 79671691 -42172165 + ORR1D1 LTR MaLR 1 181 -193 3 1192 263 136 34 80 chr11 79671699 79671875 -42171981 + (TCTCTG)n Simple_repeat Simple_repeat 2 169 0 3 1192 299 175 0 32 chr11 79671933 79672057 -42171799 + CT-rich Low_complexity Low_complexity 1 120 0 3 1192 814 221 113 0 chr11 79672057 79672261 -42171595 + ORR1D1 LTR MaLR 148 374 0 3 1192 246 197 197 0 chr11 79673104 79673165 -42170691 + MLT2B4 LTR ERVL 20 92 -464 3 1192 495 303 156 5 chr11 79673166 79673352 -42170504 + MLT2B4 LTR ERVL 339 552 -4 3 1192 361 323 15 44 chr11 79673593 79673729 -42170127 + MIR SINE MIR 16 147 -61 3 1192 347 288 34 61 chr11 79674200 79674348 -42169508 + MER5A DNA MER1_type 12 155 -34 3 1192 520 293 27 41 chr11 79674588 79674734 -42169122 + RSINE1 SINE B4 1 144 -21 3 1192 735 250 119 0 chr11 79675196 79675372 -42168484 + ID_B1 SINE B4 14 210 -14 3 1192 1037 218 39 0 chr11 79675392 79675598 -42168258 + B3 SINE B2 2 215 -1 3 1192 897 37 0 0 chr11 79675608 79675717 -42168139 + (GGAA)n Simple_repeat Simple_repeat 3 111 0 3 1192 664 292 83 70 chr11 79675743 79676045 -42167811 - MLT1K LTR MaLR -161 434 129 3 1192 1342 168 5 14 chr11 79676249 79676460 -42167396 + B3 SINE B2 2 210 -6 3 1192 317 336 56 0 chr11 79676503 79676610 -42167246 + PB1D10 SINE Alu 3 115 -34 3 1192 267 229 14 0 chr11 79676659 79676729 -42167127 + L1MB2 LINE L1 6083 6153 -18 3 1192 1235 41 0 7 chr11 79676783 79676929 -42166927 + B1_Mus1 SINE Alu 2 146 -2 3 1192 654 13 0 0 chr11 79676938 79677013 -42166843 + (GAA)n Simple_repeat Simple_repeat 2 76 0 3 1192 186 43 0 0 chr11 79677775 79677798 -42166058 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 1192 426 232 52 26 chr11 79678039 79678154 -42165702 + PB1D7 SINE Alu 3 120 0 3 1192 1888 186 35 17 chr11 79678370 79678898 -42164958 + RLTR12A LTR ERVK 2 565 -3 3 1192 241 289 0 57 chr11 79678903 79678991 -42164865 + B4A SINE B4 1 83 -82 4 1192 1734 229 56 72 chr11 79678992 79679544 -42164312 + RLTR20B3 LTR ERVK 21 563 -14 4 1192 309 324 81 70 chr11 79679549 79679735 -42164121 + B4 SINE B4 73 260 -32 4 1192 232 339 85 27 chr11 79679860 79680048 -42163808 - L2a LINE L2 -247 3179 2981 4 1192 2236 106 87 36 chr11 79680123 79680513 -42163343 + RMER17C LTR ERVK 1 410 0 4 1192 1062 96 87 43 chr11 79681200 79681385 -42162471 - B2_Mm2 SINE B2 -2 193 1 4 1192 227 345 91 0 chr11 79682750 79682860 -42160996 - MLT1J1 LTR MaLR -1 443 324 4 1192 3593 47 7 0 chr11 79682935 79683365 -42160491 + L1_Mus1 LINE L1 6135 6567 0 4 1192 568 187 37 0 chr11 79684399 79684506 -42159350 + PB1D10 SINE Alu 1 111 -6 4 1192 244 351 103 31 chr11 79684523 79684717 -42159139 + MIRb SINE MIR 59 266 -2 4 1192 1004 168 0 0 chr11 79684902 79685051 -42158805 + B1_Mur3 SINE Alu 1 149 0 4 1192 213 200 24 24 chr11 79685714 79685796 -42158060 + C-rich Low_complexity Low_complexity 4 85 0 4 1192 2304 109 15 6 chr11 79686164 79686496 -42157360 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 1192 10834 96 91 28 chr11 79686500 79689114 -42154742 + IAPEz-int LTR ERVK 3 2774 -3707 4 1192 2961 25 0 0 chr11 79689112 79689469 -42154387 + IAPEz-int LTR ERVK 4001 4357 -2124 4 1192 5401 72 33 12 chr11 79689460 79690215 -42153641 + IAPEz-int LTR ERVK 5709 6479 -2 4 1192 2304 109 15 6 chr11 79690217 79690549 -42153307 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 1192 192 200 0 0 chr11 79690561 79690611 -42153245 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1192 409 269 97 39 chr11 79690611 79690652 -42153204 - RSINE1 SINE B4 0 165 128 4 1192 411 73 0 0 chr11 79690652 79690707 -42153149 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1192 409 269 97 39 chr11 79690707 79690820 -42153036 - RSINE1 SINE B4 -38 127 3 4 1192 317 324 240 14 chr11 79690821 79691172 -42152684 + L2b LINE L2 2939 3362 -13 4 1192 225 220 60 0 chr11 79691399 79691449 -42152407 - MER5B DNA MER1_type -52 126 74 4 1192 258 246 0 0 chr11 79691524 79691581 -42152275 + L2c LINE L2 3100 3156 -231 4 1192 216 309 74 11 chr11 79691616 79691711 -42152145 + L2c LINE L2 3275 3375 0 4 1193 228 296 23 0 chr11 79692157 79692230 -42151626 - MER33 DNA MER1_type -10 314 240 4 1193 699 206 0 15 chr11 79692230 79692363 -42151493 + B1_Mur1 SINE Alu 4 134 -15 4 1193 228 296 23 0 chr11 79692363 79692377 -42151479 - MER33 DNA MER1_type -85 239 226 4 1193 658 179 8 0 chr11 79692679 79692796 -42151060 + B4 SINE B4 106 223 -69 4 1193 376 270 40 81 chr11 79692834 79692983 -42150873 + RSINE1 SINE B4 11 153 -12 4 1193 673 192 19 76 chr11 79693118 79693276 -42150580 - B1_Mur4 SINE Alu 0 150 2 4 1193 429 257 29 0 chr11 79693310 79693415 -42150441 - B3 SINE B2 0 216 109 4 1193 1224 119 124 0 chr11 79693415 79693616 -42150240 - URR1A DNA MER1_type 0 226 1 4 1193 438 276 99 7 chr11 79694525 79694667 -42149189 + RSINE1 SINE B4 2 156 -9 4 1193 595 279 21 0 chr11 79694989 79695129 -42148727 + RSINE1 SINE B4 5 147 -18 4 1193 198 71 0 0 chr11 79695132 79695160 -42148696 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1193 1205 48 0 20 chr11 79695207 79695356 -42148500 + B1_Mus1 SINE Alu 1 146 -2 4 1193 377 118 98 12 chr11 79695672 79695835 -42148021 + (CACAG)n Simple_repeat Simple_repeat 1 177 0 4 1193 236 141 106 0 chr11 79695846 79696159 -42147697 + (CACAG)n Simple_repeat Simple_repeat 1 346 0 4 1193 555 192 51 0 chr11 79696306 79696427 -42147429 + B1F2 SINE Alu 19 148 -1 4 1193 360 0 0 0 chr11 79696430 79696470 -42147386 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1193 613 185 90 30 chr11 79696764 79696898 -42146958 + B1F1 SINE Alu 7 148 -1 4 1193 871 272 133 4 chr11 79696911 79697151 -42146705 + B4A SINE B4 12 282 -10 4 1193 3893 55 55 4 chr11 79697151 79697645 -42146211 + MURVY-LTR LTR ERV1 1 519 0 4 1193 824 238 87 10 chr11 79697767 79697962 -42145894 + B3 SINE B2 1 210 -6 4 1193 215 31 31 0 chr11 79698002 79698034 -42145822 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1193 711 226 80 0 chr11 79698047 79698184 -42145672 - B1_Mur3 SINE Alu 0 149 2 4 1193 530 323 6 37 chr11 79698776 79698940 -42144916 + RSINE1 SINE B4 6 164 -1 4 1193 282 349 43 54 chr11 79698781 79698966 -42144890 + B3A SINE B2 10 192 -6 4 1193 23 0 0 0 chr11 79698966 79698989 -42144867 + AT_rich Low_complexity Low_complexity 1 23 0 4 1193 1054 200 41 21 chr11 79699006 79699228 -42144628 - B3 SINE B2 -1 215 12 4 1193 222 319 53 32 chr11 79699809 79699903 -42143953 - MIRb SINE MIR -115 153 58 4 1193 873 215 92 10 chr11 79700154 79700361 -42143495 - ID_B1 SINE B4 0 224 1 4 1193 231 330 130 67 chr11 79701190 79701521 -42142335 - Helitron1Nb_Mam RC Helitron -338 778 427 4 1193 327 104 0 0 chr11 79701529 79701577 -42142279 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 4 1193 410 190 25 0 chr11 79701586 79701665 -42142191 - PB1D7 SINE Alu -13 107 27 4 1193 251 241 151 24 chr11 79701674 79701840 -42142016 - Helitron1Na_Mam RC Helitron -649 413 227 4 1193 577 247 235 6 chr11 79701844 79702023 -42141833 + ID_B1 SINE B4 4 223 -1 4 1193 220 184 61 0 chr11 79702024 79702073 -42141783 + GA-rich Low_complexity Low_complexity 1 52 0 4 1193 1138 90 0 0 chr11 79702083 79702228 -42141628 - B1_Mm SINE Alu 0 147 3 4 1193 745 215 0 7 chr11 79702381 79702526 -42141330 + B1_Mur4 SINE Alu 2 145 -5 4 1193 31 26 0 0 chr11 79703032 79703070 -42140786 + AT_rich Low_complexity Low_complexity 1 38 0 4 1193 808 205 83 42 chr11 79703099 79703292 -42140564 + B3A SINE B2 3 203 -13 4 1193 2531 67 0 15 chr11 79703498 79703830 -42140026 + MTB_Mm LTR MaLR 1 327 -80 4 1193 436 88 0 0 chr11 79703978 79704035 -42139821 + MTB_Mm LTR MaLR 344 400 -7 4 1193 376 298 71 71 chr11 79704072 79704296 -42139560 - RMER10A LTR ERVL -201 241 18 4 1193 207 114 0 0 chr11 79704428 79704463 -42139393 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1193 1396 166 156 75 chr11 79705061 79705433 -42138423 - MTD LTR MaLR 0 419 18 4 1193 1014 165 31 46 chr11 79706198 79706459 -42137397 + Lx4B LINE L1 6767 7023 -35 4 1193 222 37 0 0 chr11 79706472 79706499 -42137357 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1193 1988 118 24 24 chr11 79706610 79706939 -42136917 + ORR1A4 LTR MaLR 1 329 0 4 1193 302 0 0 26 chr11 79707226 79707265 -42136591 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1193 747 122 19 0 chr11 79707265 79707372 -42136484 - PB1D9 SINE Alu -11 109 1 4 1193 339 236 28 28 chr11 79707486 79707595 -42136261 + L1MB2 LINE L1 5713 5821 -362 4 1193 1426 78 0 30 chr11 79707712 79707911 -42135945 - B2_Mm2 SINE B2 -2 193 1 4 1193 475 167 13 0 chr11 79707953 79708031 -42135825 - ID4_ SINE ID -1 82 4 4 1193 394 148 0 16 chr11 79708181 79708243 -42135613 + B1_Mus1 SINE Alu 1 61 -87 4 1193 442 217 28 0 chr11 79708244 79708350 -42135506 + L1MB2 LINE L1 5830 5938 -233 4 1193 300 221 15 0 chr11 79708528 79708596 -42135260 + PB1D10 SINE Alu 49 117 0 4 1193 3449 204 14 8 chr11 79708674 79709377 -42134479 + Lx9 LINE L1 6569 7275 -369 4 1193 571 195 195 0 chr11 79709414 79709532 -42134324 + B1_Mur2 SINE Alu 7 147 -2 4 1193 620 264 94 7 chr11 79709552 79709701 -42134155 + B3A SINE B2 1 162 -36 4 1193 320 274 161 93 chr11 79709689 79709711 -42134145 + B4 SINE B4 68 88 -204 4 1193 515 16 0 15 chr11 79709711 79709776 -42134080 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 4 1193 589 171 152 16 chr11 79709778 79709903 -42133953 + B1_Mus2 SINE Alu 6 147 0 4 1193 320 274 161 93 chr11 79709903 79709914 -42133942 + B4 SINE B4 91 239 -53 4 1193 373 320 57 25 chr11 79709914 79710071 -42133785 + L1MC LINE L1 3795 3956 -2190 4 1193 688 175 0 62 chr11 79710338 79710466 -42133390 - PB1D9 SINE Alu 0 120 1 4 1193 784 198 142 13 chr11 79710493 79710709 -42133147 - ORR1D2 LTR MaLR 0 374 121 4 1193 639 230 63 6 chr11 79712365 79712540 -42131316 - ORR1D2 LTR MaLR -183 187 3 4 1193 964 123 27 7 chr11 79712627 79712774 -42131082 - B1_Mur4 SINE Alu 0 150 1 4 1193 23 0 0 0 chr11 79712863 79712886 -42130970 + AT_rich Low_complexity Low_complexity 1 23 0 4 1193 180 0 0 0 chr11 79712903 79712923 -42130933 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1193 645 225 8 0 chr11 79712930 79713050 -42130806 - RSINE1 SINE B4 -43 122 2 4 1193 481 328 42 0 chr11 79713085 79713274 -42130582 + Zaphod DNA Tip100 3788 3984 -47 4 1193 486 0 0 0 chr11 79713847 79713901 -42129955 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1193 751 179 13 73 chr11 79714177 79714328 -42129528 + B1_Mur1 SINE Alu 1 142 -7 4 1193 689 277 52 94 chr11 79714344 79714535 -42129321 - B3A SINE B2 -12 183 1 4 1193 374 215 234 78 chr11 79714956 79715097 -42128759 + RSINE1 SINE B4 3 165 0 4 1193 256 307 96 62 chr11 79715244 79715390 -42128466 + MLT1B LTR MaLR 1 151 -239 4 1193 492 359 71 39 chr11 79715396 79715677 -42128179 + B4A SINE B4 1 290 -2 4 1193 351 0 0 0 chr11 79715749 79715788 -42128068 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 4 1193 226 278 42 0 chr11 79715904 79715976 -42127880 + MLT1B LTR MaLR 296 370 -4 4 1193 185 302 19 0 chr11 79716929 79716982 -42126874 - L2 LINE L2 -1140 2279 2226 4 1193 455 262 28 9 chr11 79717264 79717372 -42126484 + PB1D10 SINE Alu 3 112 -5 4 1193 588 261 0 25 chr11 79717591 79717713 -42126143 + RSINE1 SINE B4 12 130 -35 4 1193 405 0 0 0 chr11 79717721 79717766 -42126090 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 4 1193 447 267 3 15 chr11 79717772 79717884 -42125972 + B1_Mur1 SINE Alu 45 149 0 4 1193 245 304 38 0 chr11 79717952 79718031 -42125825 - MTEa LTR MaLR -3 376 295 4 1193 723 169 7 68 chr11 79718154 79718300 -42125556 + B1_Mur1 SINE Alu 12 148 -1 4 1193 241 315 97 53 chr11 79718415 79718529 -42125327 - MLT1A1 LTR MaLR -289 119 1 4 1193 1073 152 129 0 chr11 79718597 79718775 -42125081 + B3 SINE B2 1 201 -15 4 1193 488 286 26 9 chr11 79718808 79718921 -42124935 + PB1D10 SINE Alu 1 115 -2 4 1193 282 221 206 0 chr11 79718943 79719031 -42124825 + PB1D7 SINE Alu 1 109 -40 4 1193 1083 216 143 38 chr11 79719032 79719392 -42124464 - MTD LTR MaLR -14 405 4 5 1193 302 274 0 0 chr11 79720020 79720082 -42123774 + ID4_ SINE ID 2 63 -20 5 1193 384 22 0 0 chr11 79720802 79720847 -42123009 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1193 700 230 136 11 chr11 79720875 79721035 -42122821 + B3A SINE B2 1 183 -15 5 1193 332 86 42 14 chr11 79721035 79721106 -42122750 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1193 700 230 136 11 chr11 79721106 79721121 -42122735 + B3A SINE B2 184 198 0 5 1193 624 270 0 0 chr11 79721122 79721248 -42122608 + B1_Mur1 SINE Alu 3 128 -21 5 1193 24 116 0 0 chr11 79721251 79721380 -42122476 + AT_rich Low_complexity Low_complexity 1 129 0 5 1193 1157 98 45 23 chr11 79721381 79721558 -42122298 + B2_Mm2 SINE B2 1 181 -14 5 1193 357 152 7 11 chr11 79721602 79721710 -42122146 + B2_Mm2 SINE B2 47 189 -6 5 1193 243 246 177 25 chr11 79721793 79721909 -42121947 - MIRc SINE MIR -115 153 14 5 1193 256 347 83 28 chr11 79721928 79722109 -42121747 - MIRb SINE MIR -32 236 46 5 1193 247 287 114 23 chr11 79722749 79722881 -42120975 + L1M5 LINE L1 5531 5674 -520 5 1193 57 47 0 0 chr11 79722892 79722977 -42120879 + AT_rich Low_complexity Low_complexity 1 85 0 5 1193 812 171 21 0 chr11 79722982 79723122 -42120734 + B1_Mur4 SINE Alu 1 143 -7 5 1193 233 360 44 11 chr11 79723187 79723203 -42120653 - RSINE1 SINE B4 -69 96 4 5 1193 417 189 40 0 chr11 79723203 79723277 -42120579 - B3A SINE B2 -119 79 3 5 1193 461 32 16 0 chr11 79724194 79724257 -42119599 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1193 351 112 73 15 chr11 79724274 79724410 -42119446 + (CA)n Simple_repeat Simple_repeat 2 145 0 5 1193 329 186 0 0 chr11 79724410 79724469 -42119387 + HAL1-3A_ME LINE L1 1977 2035 -823 5 1193 753 324 165 35 chr11 79724588 79724716 -42119140 - L2 LINE L2 -411 3008 2868 5 1193 1054 231 101 93 chr11 79724716 79725083 -42118773 - ORR1D2 LTR MaLR 0 370 1 5 1193 753 324 165 35 chr11 79725083 79725820 -42118036 - L2 LINE L2 -552 2867 2031 5 1193 498 283 138 14 chr11 79725881 79726233 -42117623 + L1M5 LINE L1 5454 5852 -592 5 1193 326 221 63 25 chr11 79726244 79726323 -42117533 + ID4 SINE ID 2 83 0 5 1193 252 234 0 0 chr11 79726356 79726403 -42117453 + ID2 SINE ID 31 77 -6 5 1193 180 0 0 0 chr11 79726415 79726435 -42117421 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 5 1193 900 139 20 20 chr11 79726435 79726582 -42117274 + B1_Mus2 SINE Alu 1 147 0 5 1193 510 223 35 9 chr11 79726718 79726831 -42117025 + PB1D10 SINE Alu 1 116 -1 5 1193 517 128 64 0 chr11 79726860 79726969 -42116887 + Lx9 LINE L1 7527 7642 -2 5 1193 581 256 57 5 chr11 79726980 79727172 -42116684 + L1MB8 LINE L1 5698 5899 -279 5 1193 282 116 0 0 chr11 79727173 79727216 -42116640 + (GAA)n Simple_repeat Simple_repeat 2 44 0 5 1193 316 285 34 112 chr11 79727262 79727495 -42116361 + L1MB8 LINE L1 5946 6160 -14 5 1193 322 335 95 0 chr11 79727470 79727649 -42116207 + L1ME3A LINE L1 5911 6106 -67 5 1193 473 204 100 18 chr11 79727682 79727792 -42116064 - PB1D7 SINE Alu -1 119 1 5 1193 593 207 130 60 chr11 79727822 79728007 -42115849 - B3A SINE B2 0 198 1 5 1193 1343 94 0 50 chr11 79728112 79728313 -42115543 + B2_Mm2 SINE B2 1 191 -4 5 1193 945 159 0 0 chr11 79728405 79728550 -42115306 + B1_Mus1 SINE Alu 1 145 -3 5 1193 983 156 6 0 chr11 79728570 79728749 -42115107 + GA-rich Low_complexity Low_complexity 1 180 0 5 1193 269 75 0 48 chr11 79728820 79728862 -42114994 + U2 snRNA snRNA 1 40 -148 5 1193 341 274 113 27 chr11 79729816 79729966 -42113890 + MLT1D LTR MaLR 17 179 -326 5 1193 3546 15 5 0 chr11 79730785 79731179 -42112677 - MTA_Mm LTR MaLR 0 396 1 5 1193 9296 33 4 1 chr11 79731179 79732274 -42111582 - MTA_Mm-int LTR MaLR 0 1098 1 5 1193 3546 15 5 0 chr11 79732274 79732668 -42111188 - MTA_Mm LTR MaLR 0 396 1 5 1193 211 319 134 38 chr11 79732725 79732911 -42110945 + L2b LINE L2 2960 3163 -212 5 1193 229 308 13 13 chr11 79733296 79733375 -42110481 + MIRb SINE MIR 91 169 -99 5 1193 353 229 0 46 chr11 79733377 79733464 -42110392 + ID4 SINE ID 1 83 0 5 1193 355 242 20 7 chr11 79733464 79733478 -42110378 + ID_B1 SINE B4 1 98 -194 5 1193 267 289 21 154 chr11 79734643 79734831 -42109025 + RSINE1 SINE B4 3 165 0 5 1193 28 29 0 0 chr11 79734852 79734887 -42108969 + AT_rich Low_complexity Low_complexity 1 35 0 5 1193 1358 78 22 0 chr11 79735022 79735201 -42108655 + B2_Mm2 SINE B2 2 184 -11 5 1193 310 53 379 11 chr11 79735258 79735353 -42108503 + B2_Mm2 SINE B2 65 194 -1 5 1193 511 214 20 0 chr11 79735363 79735461 -42108395 + B3 SINE B2 100 199 -17 5 1193 671 35 12 0 chr11 79735475 79735561 -42108295 + (GAA)n Simple_repeat Simple_repeat 1 87 0 5 1193 432 37 0 0 chr11 79736523 79736577 -42107279 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1193 843 173 0 7 chr11 79736697 79736837 -42107019 + B1_Mur2 SINE Alu 1 139 -10 5 1193 270 0 0 0 chr11 79736837 79736867 -42106989 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1193 654 216 0 0 chr11 79737168 79737284 -42106572 + B1_Mur2 SINE Alu 21 136 -13 5 1193 600 14 0 0 chr11 79737284 79737353 -42106503 + (TAA)n Simple_repeat Simple_repeat 3 71 0 5 1193 560 252 0 16 chr11 79737353 79737365 -42106491 + B1_Mus2 SINE Alu 135 146 -1 5 1193 1092 297 84 100 chr11 79738162 79738783 -42105073 - RLTR18 LTR ERVK -5 611 1 5 1193 298 258 76 83 chr11 79738915 79738970 -42104886 + B3A SINE B2 1 112 -86 5 1193 538 118 0 0 chr11 79738970 79739046 -42104810 - RSINE1 SINE B4 -87 78 3 5 1193 298 258 76 83 chr11 79739046 79739059 -42104797 + B3A SINE B2 113 143 -55 5 1193 1104 38 45 0 chr11 79739168 79739300 -42104556 + B1_Mm SINE Alu 1 138 -9 5 1193 318 235 14 52 chr11 79739350 79739437 -42104419 - ID4_ SINE ID -57 95 16 5 1193 201 74 0 0 chr11 79739446 79739473 -42104383 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1193 1232 48 0 0 chr11 79739473 79739620 -42104236 - B1_Mm SINE Alu 0 147 1 5 1193 1400 94 11 0 chr11 79739648 79739839 -42104017 - B2_Mm1t SINE B2 0 193 1 5 1193 1614 42 0 5 chr11 79739986 79740177 -42103679 - B2_Mm1t SINE B2 -3 190 1 5 1193 477 222 48 57 chr11 79740284 79740399 -42103457 + ID_B1 SINE B4 102 216 -8 5 1193 981 77 0 8 chr11 79740399 79740530 -42103326 + B1_Mus1 SINE Alu 1 130 -18 5 1193 550 282 35 89 chr11 79740739 79740788 -42103068 + MTEb LTR MaLR 129 177 -202 5 1193 475 288 39 7 chr11 79740788 79740942 -42102914 + RSINE1 SINE B4 3 161 -4 5 1193 550 282 35 89 chr11 79740942 79741101 -42102755 + MTEb LTR MaLR 178 320 -59 5 1193 1394 86 5 11 chr11 79741101 79741289 -42102567 + B2_Mm2 SINE B2 1 187 -8 5 1193 550 282 35 89 chr11 79741289 79741336 -42102520 + MTEb LTR MaLR 321 371 -8 5 1193 1598 47 5 0 chr11 79741339 79741531 -42102325 + B2_Mm1t SINE B2 1 193 0 5 1193 340 195 118 35 chr11 79741686 79741771 -42102085 + PB1D10 SINE Alu 26 117 0 5 1193 376 216 33 22 chr11 79742586 79742676 -42101180 + MIR SINE MIR 18 108 -154 5 1193 966 285 80 44 chr11 79742703 79743139 -42100717 + L1MB5 LINE L1 5620 6071 -103 5 1193 302 60 0 8 chr11 79743233 79743280 -42100576 + MIR SINE MIR 111 154 -122 5 1193 185 154 0 25 chr11 79743321 79743361 -42100495 + GA-rich Low_complexity Low_complexity 2 40 0 5 1193 246 146 0 0 chr11 79743590 79743631 -42100225 - MIRb SINE MIR -81 187 147 5 1193 284 250 57 32 chr11 79743642 79743766 -42100090 + ORR1E LTR MaLR 14 140 -219 5 1193 570 248 14 47 chr11 79743763 79743911 -42099945 + B3 SINE B2 69 211 -5 5 1193 381 279 36 117 chr11 79745639 79745862 -42097994 + RMER15 LTR ERVL 305 509 -66 5 1193 412 204 119 55 chr11 79745992 79746101 -42097755 + MER3 DNA MER1_type 2 117 -92 5 1193 597 191 111 0 chr11 79746107 79746233 -42097623 + B1_Mur1 SINE Alu 10 149 0 5 1193 240 200 0 0 chr11 79746233 79746283 -42097573 + A-rich Low_complexity Low_complexity 1 50 0 5 1193 371 136 0 33 chr11 79746283 79746344 -42097512 + B3 SINE B2 148 206 -10 5 1193 983 148 0 0 chr11 79746350 79746499 -42097357 - B1_Mur3 SINE Alu 0 149 1 5 1193 22 0 0 0 chr11 79746516 79746538 -42097318 + AT_rich Low_complexity Low_complexity 1 22 0 5 1193 559 165 191 0 chr11 79746550 79746665 -42097191 + B1_Mur4 SINE Alu 2 138 -12 5 1193 915 149 48 42 chr11 79746912 79747101 -42096755 + B2_Mm2 SINE B2 1 190 -5 5 1193 1198 55 0 0 chr11 79747204 79747350 -42096506 + B1_Mus2 SINE Alu 2 147 0 5 1193 1272 68 51 6 chr11 79747455 79747632 -42096224 - B2_Mm2 SINE B2 -4 191 7 5 1193 460 165 113 73 chr11 79748093 79748217 -42095639 + B1F1 SINE Alu 21 149 0 5 1193 487 274 114 46 chr11 79748699 79749082 -42094774 + RLTR12B LTR ERVK 1 392 -176 5 1193 321 250 48 107 chr11 79749743 79749881 -42093975 - L1MA6 LINE L1 -27 6273 6132 5 1193 1207 68 0 0 chr11 79749881 79750028 -42093828 - B1_Mus1 SINE Alu -1 147 1 5 1193 321 250 48 107 chr11 79750028 79750095 -42093761 - L1MA6 LINE L1 -169 6131 6080 5 1193 623 233 29 43 chr11 79750219 79750358 -42093498 - B1F SINE Alu 0 149 13 5 1193 668 278 0 31 chr11 79750377 79750540 -42093316 - RSINE1 SINE B4 -4 161 4 5 1193 1597 38 0 11 chr11 79750574 79750762 -42093094 + B2_Mm1a SINE B2 1 186 -7 5 1193 557 129 48 29 chr11 79750913 79751017 -42092839 + B1F SINE Alu 42 147 -2 5 1193 201 171 0 0 chr11 79751021 79751056 -42092800 + A-rich Low_complexity Low_complexity 1 35 0 5 1193 381 282 69 90 chr11 79751390 79751496 -42092360 + RSINE1 SINE B4 8 117 -48 5 1193 1643 32 0 0 chr11 79751496 79751684 -42092172 + B2_Mm1a SINE B2 1 188 -5 5 1193 381 282 69 90 chr11 79751684 79751721 -42092135 + RSINE1 SINE B4 118 148 -17 5 1193 1335 115 16 0 chr11 79751735 79751926 -42091930 + B2_Mm2 SINE B2 2 195 0 5 1193 583 269 6 77 chr11 79751942 79752111 -42091745 + B3A SINE B2 27 183 -15 6 1193 468 72 0 14 chr11 79752136 79752206 -42091650 + L1_Mus2 LINE L1 6498 6566 0 6 1193 778 119 78 16 chr11 79752286 79752414 -42091442 + B1_Mus1 SINE Alu 3 138 -10 6 1193 240 35 0 0 chr11 79752414 79752443 -42091413 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1193 204 243 27 0 chr11 79752799 79752873 -42090983 + A-rich Low_complexity Low_complexity 4 79 0 6 1193 1206 48 7 0 chr11 79753032 79753177 -42090679 - B1_Mus1 SINE Alu 0 148 3 6 1193 720 287 6 49 chr11 79753204 79753238 -42090618 - B3 SINE B2 -38 178 150 6 1193 395 38 0 19 chr11 79753238 79753292 -42090564 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1193 720 287 6 49 chr11 79753292 79753440 -42090416 - B3 SINE B2 -67 149 4 6 1193 811 145 28 35 chr11 79753512 79753655 -42090201 + B1_Mur3 SINE Alu 8 149 0 6 1193 279 0 0 0 chr11 79753676 79753707 -42090149 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1193 543 219 130 32 chr11 79753726 79753849 -42090007 - B1_Mur1 SINE Alu -2 147 13 6 1193 226 200 139 97 chr11 79753793 79753865 -42089991 - MT2B LTR ERVL -362 239 165 6 1193 1272 34 0 0 chr11 79753887 79754034 -42089822 - B1_Mus1 SINE Alu 0 148 2 6 1193 231 36 0 0 chr11 79754660 79754688 -42089168 + (TTG)n Simple_repeat Simple_repeat 2 29 0 6 1193 2719 133 135 18 chr11 79754813 79755310 -42088546 + RMER4B LTR ERVK 17 571 -14 6 1193 324 258 0 0 chr11 79756400 79756466 -42087390 + ID SINE ID 1 66 -158 6 1193 1229 41 7 0 chr11 79756499 79756645 -42087211 - B1_Mus1 SINE Alu -1 147 1 6 1193 30 45 0 0 chr11 79756672 79756716 -42087140 + AT_rich Low_complexity Low_complexity 1 44 0 6 1193 364 254 125 16 chr11 79757124 79757252 -42086604 + RSINE1 SINE B4 12 153 -12 6 1193 768 173 62 62 chr11 79757444 79757604 -42086252 + B3 SINE B2 1 160 -56 6 1193 252 86 0 0 chr11 79758243 79758278 -42085578 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1193 288 0 0 0 chr11 79758278 79758309 -42085547 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1193 226 235 0 19 chr11 79758457 79758509 -42085347 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1193 485 305 153 25 chr11 79758536 79758738 -42085118 - B4A SINE B4 -2 290 63 6 1193 283 256 37 18 chr11 79758899 79759062 -42084794 + GA-rich Low_complexity Low_complexity 4 169 0 6 1193 464 238 0 0 chr11 79759062 79759146 -42084710 + B3 SINE B2 2 85 -131 6 1193 333 118 0 0 chr11 79759841 79759892 -42083964 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1193 1082 44 73 0 chr11 79759892 79760029 -42083827 - B1_Mus2 SINE Alu 0 147 1 6 1193 545 259 17 145 chr11 79760079 79760154 -42083702 + B3A SINE B2 1 77 -121 6 1193 1528 47 11 0 chr11 79760154 79760345 -42083511 + B2_Mm1t SINE B2 1 193 0 6 1193 545 259 17 145 chr11 79760345 79760441 -42083415 + B3A SINE B2 78 150 -48 6 1193 723 185 69 0 chr11 79760628 79760758 -42083098 + B1_Mur1 SINE Alu 8 146 -3 6 1193 598 306 18 18 chr11 79760821 79761044 -42082812 - ID_B1 SINE B4 0 224 2 6 1193 437 250 31 0 chr11 79761119 79761215 -42082641 + PB1D10 SINE Alu 13 111 -6 6 1193 601 248 57 22 chr11 79761263 79761417 -42082439 + ID_B1 SINE B4 2 223 -1 6 1193 1070 46 0 0 chr11 79761417 79761547 -42082309 + B1_Mus1 SINE Alu 10 139 -9 6 1193 247 267 187 0 chr11 79761578 79761653 -42082203 + RSINE1 SINE B4 5 93 -72 6 1193 811 152 48 53 chr11 79761657 79761845 -42082011 + B2_Mm2 SINE B2 1 187 -8 6 1193 1056 136 0 0 chr11 79761854 79762008 -42081848 + B2_Mm2 SINE B2 1 154 -41 6 1193 207 0 0 0 chr11 79762009 79762032 -42081824 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1193 1205 98 81 0 chr11 79762065 79762238 -42081618 + B2_Mm2 SINE B2 1 187 -8 6 1193 308 301 0 0 chr11 79762244 79762317 -42081539 + RSINE1 SINE B4 89 161 -4 6 1193 1283 83 33 0 chr11 79763033 79763214 -42080642 + L1_Mus1 LINE L1 6379 6565 -2 6 1193 22 35 0 0 chr11 79763251 79763280 -42080576 + AT_rich Low_complexity Low_complexity 1 29 0 6 1193 297 163 330 55 chr11 79763402 79763493 -42080363 + B1F1 SINE Alu 1 116 -1 6 1193 1063 148 27 21 chr11 79763849 79764036 -42079820 - B2_Mm2 SINE B2 -6 189 2 6 1193 931 164 0 0 chr11 79764039 79764185 -42079671 - B1_Mus1 SINE Alu 0 148 3 6 1193 254 154 18 71 chr11 79764470 79764526 -42079330 - PB1D9 SINE Alu -3 117 65 6 1193 274 159 23 0 chr11 79764547 79764591 -42079265 - B4 SINE B4 -222 70 26 6 1193 216 277 108 0 chr11 79764591 79764609 -42079247 - ID4 SINE ID -11 69 1 6 1193 1029 247 22 22 chr11 79765463 79765694 -42078162 + B4A SINE B4 2 232 -60 6 1193 590 302 22 0 chr11 79765694 79765833 -42078023 + RSINE1 SINE B4 3 144 -21 6 1193 538 191 95 9 chr11 79765888 79766004 -42077852 + B1_Mur1 SINE Alu 24 149 0 6 1193 24 0 0 0 chr11 79766004 79766028 -42077828 + AT_rich Low_complexity Low_complexity 1 24 0 6 1193 476 283 42 28 chr11 79766032 79766174 -42077682 + RSINE1 SINE B4 3 146 -19 6 1193 357 298 107 0 chr11 79766206 79766337 -42077519 + RSINE1 SINE B4 3 147 -18 6 1193 538 220 28 0 chr11 79766596 79766705 -42077151 - PB1D10 SINE Alu 0 117 6 6 1193 224 275 14 0 chr11 79766774 79766843 -42077013 + PB1D10 SINE Alu 1 70 -47 6 1193 242 284 0 0 chr11 79766875 79766942 -42076914 + RSINE1 SINE B4 88 154 -11 6 1193 218 122 24 0 chr11 79767230 79767271 -42076585 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1193 1981 185 19 22 chr11 79767565 79767930 -42075926 + ORR1D1 LTR MaLR 2 365 -9 6 1193 928 123 7 33 chr11 79768153 79768304 -42075552 + B1_Mus1 SINE Alu 2 148 0 6 1193 1079 140 129 0 chr11 79768323 79768509 -42075347 + B3 SINE B2 2 211 -5 6 1193 648 196 34 61 chr11 79768510 79768657 -42075199 + B1_Mur2 SINE Alu 1 143 -6 6 1193 986 189 75 0 chr11 79768718 79768919 -42074937 - B3 SINE B2 0 216 1 6 1193 306 0 0 0 chr11 79769059 79769093 -42074763 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1193 519 307 53 7 chr11 79769386 79769537 -42074319 + RSINE1 SINE B4 2 159 -6 6 1193 297 236 173 36 chr11 79769552 79769662 -42074194 - LTR87 LTR ERVL? -138 486 362 6 1193 326 303 41 8 chr11 79770360 79770375 -42073481 + B4 SINE B4 72 90 -202 6 1193 512 200 9 9 chr11 79770375 79770486 -42073370 + B1_Mur1 SINE Alu 2 112 -37 6 1193 1148 64 0 0 chr11 79771156 79771296 -42072560 + B1_Mus1 SINE Alu 1 140 -8 6 1193 252 86 0 0 chr11 79771327 79771362 -42072494 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1193 676 197 50 28 chr11 79771645 79771786 -42072070 - ID_B1 SINE B4 -58 166 23 6 1193 262 266 53 18 chr11 79771933 79772024 -42071832 - PB1D9 SINE Alu -23 125 1 6 1193 357 24 0 0 chr11 79772460 79772502 -42071354 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1193 255 61 0 0 chr11 79772826 79772859 -42070997 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1193 23 33 0 0 chr11 79772975 79773005 -42070851 + AT_rich Low_complexity Low_complexity 1 30 0 6 1193 1219 61 0 0 chr11 79773093 79773240 -42070616 + B1_Mus2 SINE Alu 1 147 0 6 1193 517 215 28 18 chr11 79773357 79773466 -42070390 - PB1D10 SINE Alu 0 117 8 6 1193 370 331 16 8 chr11 79773379 79773486 -42070370 - ID_B1 SINE B4 -48 176 69 6 1193 396 236 202 8 chr11 79773486 79773610 -42070246 + B3 SINE B2 1 148 -68 6 1193 1071 65 65 0 chr11 79774063 79774201 -42069655 + B1_Mus2 SINE Alu 1 147 0 6 1193 249 33 0 0 chr11 79774682 79774712 -42069144 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1193 232 214 24 0 chr11 79774724 79774766 -42069090 - ID SINE ID -157 67 25 6 1193 327 191 28 0 chr11 79774981 79775063 -42068793 - B1_Mur4 SINE Alu -64 86 2 6 1193 447 214 0 84 chr11 79776417 79776524 -42067332 + RSINE1 SINE B4 68 165 0 6 1193 22 0 0 0 chr11 79776527 79776549 -42067307 + AT_rich Low_complexity Low_complexity 1 22 0 6 1193 207 125 0 0 chr11 79777314 79777354 -42066502 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1193 216 178 22 0 chr11 79777557 79777602 -42066254 - B4 SINE B4 -245 47 2 6 1193 381 172 0 30 chr11 79777618 79777684 -42066172 + B1_Mur3 SINE Alu 1 64 -85 6 1193 184 0 97 0 chr11 79777684 79777715 -42066141 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1193 694 213 22 7 chr11 79777715 79777852 -42066004 - B1_Mur3 SINE Alu -10 139 1 6 1193 711 182 132 47 chr11 79778178 79778197 -42065659 - B3 SINE B2 -10 206 188 6 1193 323 96 19 0 chr11 79778197 79778249 -42065607 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1193 711 182 132 47 chr11 79778249 79778419 -42065437 - B3 SINE B2 -29 187 1 6 1193 233 160 29 48 chr11 79778465 79778570 -42065286 + (TATG)n Simple_repeat Simple_repeat 4 106 0 6 1193 341 298 201 81 chr11 79778586 79778845 -42065011 - B4A SINE B4 0 292 3 6 1193 204 143 0 0 chr11 79779930 79779972 -42063884 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 6 1193 396 0 0 0 chr11 79780453 79780497 -42063359 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1193 1523 54 38 0 chr11 79780528 79780712 -42063144 + B2_Mm2 SINE B2 2 192 -3 6 1193 851 247 67 57 chr11 79780718 79780928 -42062928 - B4 SINE B4 0 292 81 6 1193 416 214 202 10 chr11 79780967 79781066 -42062790 + PB1D9 SINE Alu 2 119 -1 6 1193 204 158 26 0 chr11 79781077 79781115 -42062741 + GA-rich Low_complexity Low_complexity 3 41 0 6 1193 263 265 43 14 chr11 79781122 79781191 -42062665 + ID4_ SINE ID 13 83 0 7 1193 21 0 0 0 chr11 79781237 79781258 -42062598 + AT_rich Low_complexity Low_complexity 1 21 0 7 1193 310 245 48 80 chr11 79781304 79781426 -42062430 - PB1D7 SINE Alu -7 113 1 7 1193 224 215 0 58 chr11 79782284 79782328 -42061528 + A-rich Low_complexity Low_complexity 1 42 0 7 1193 1221 62 7 0 chr11 79782328 79782474 -42061382 + B1_Mm SINE Alu 1 147 0 7 1193 224 215 0 58 chr11 79782474 79782498 -42061358 + A-rich Low_complexity Low_complexity 43 65 0 7 1193 25 31 0 0 chr11 79782587 79782619 -42061237 + AT_rich Low_complexity Low_complexity 1 32 0 7 1193 225 0 0 0 chr11 79782626 79782651 -42061205 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1193 1009 127 0 0 chr11 79782654 79782788 -42061068 - B1_Mus1 SINE Alu -14 134 1 7 1193 198 167 0 0 chr11 79782832 79782868 -42060988 + A-rich Low_complexity Low_complexity 1 36 0 7 1193 896 58 107 0 chr11 79782877 79782998 -42060858 + B1_Mus2 SINE Alu 9 142 -5 7 1193 198 0 0 0 chr11 79783000 79783022 -42060834 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 1193 235 329 53 0 chr11 79783204 79783280 -42060576 - B1_Mur2 SINE Alu -56 93 14 7 1193 1192 82 0 7 chr11 79783435 79783583 -42060273 + B1_Mus2 SINE Alu 1 147 0 7 1193 1237 75 126 11 chr11 79783593 79783768 -42060088 + B2_Mm2 SINE B2 1 195 0 7 1193 732 251 55 55 chr11 79783820 79784022 -42059834 - B3 SINE B2 -13 203 2 7 1193 439 152 258 11 chr11 79784055 79784148 -42059708 + B1_Mus2 SINE Alu 19 134 -13 7 1193 228 35 0 0 chr11 79784148 79784177 -42059679 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 7 1193 444 278 74 0 chr11 79784477 79784585 -42059271 - B4A SINE B4 -176 116 1 7 1193 224 244 282 0 chr11 79784626 79784704 -42059152 + PB1D10 SINE Alu 18 117 0 7 1193 1085 96 139 6 chr11 79784708 79784866 -42058990 + B2_Mm1t SINE B2 1 179 -14 7 1193 382 16 45 45 chr11 79784901 79784967 -42058889 + B2_Mm1a SINE B2 127 192 -1 7 1193 1102 58 0 0 chr11 79785080 79785217 -42058639 + B1_Mus1 SINE Alu 10 146 -2 7 1193 516 295 21 21 chr11 79785295 79785437 -42058419 + RSINE1 SINE B4 1 142 -23 7 1193 333 0 0 0 chr11 79785440 79785477 -42058379 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1193 21 36 0 0 chr11 79785477 79785505 -42058351 + AT_rich Low_complexity Low_complexity 1 28 0 7 1193 798 137 0 51 chr11 79785629 79785767 -42058089 - B1_Mus1 SINE Alu 0 148 18 7 1193 1650 62 0 5 chr11 79785814 79786010 -42057846 + B2_Mm2 SINE B2 1 195 0 7 1193 202 29 57 0 chr11 79786175 79786210 -42057646 + (TTG)n Simple_repeat Simple_repeat 1 37 0 7 1193 231 114 0 0 chr11 79786457 79786492 -42057364 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1193 389 248 76 41 chr11 79786611 79786804 -42057052 - MIRb SINE MIR -17 251 43 7 1193 23 0 0 0 chr11 79787052 79787075 -42056781 + GC_rich Low_complexity Low_complexity 1 23 0 7 1193 632 290 96 24 chr11 79788499 79788750 -42055106 - HAL1 LINE L1 -656 1851 1583 7 1193 249 282 155 31 chr11 79788785 79788946 -42054910 - HAL1 LINE L1 -1074 1433 1253 7 1193 925 255 43 130 chr11 79788948 79789363 -42054493 - MTE2a LTR MaLR 0 379 1 7 1193 1779 16 0 0 chr11 79789363 79789549 -42054307 + B2_Mm1a SINE B2 3 188 -5 7 1193 2772 80 80 5 chr11 79789605 79789993 -42053863 - BGLII LTR ERVK -4 417 1 7 1193 1030 74 0 45 chr11 79790232 79790286 -42053570 + B1_Mus1 SINE Alu 1 52 -96 7 1193 4254 52 42 71 chr11 79790286 79790595 -42053261 + LTRIS2 LTR ERV1 5 304 -260 7 1193 1211 37 0 0 chr11 79790595 79790729 -42053127 - B1_Mm SINE Alu -13 134 1 7 1193 4254 52 42 71 chr11 79790729 79790996 -42052860 + LTRIS2 LTR ERV1 305 564 0 7 1193 1030 74 0 45 chr11 79790996 79791096 -42052760 + B1_Mus1 SINE Alu 53 148 0 7 1193 249 223 146 87 chr11 79791125 79791228 -42052628 + RSINE1 SINE B4 17 125 -40 7 1193 402 21 0 0 chr11 79791251 79791298 -42052558 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1193 653 231 22 16 chr11 79791347 79791532 -42052324 - RMER6B LTR ERVK -77 384 199 7 1193 267 128 0 0 chr11 79791532 79791561 -42052295 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1193 1266 75 0 0 chr11 79791561 79791708 -42052148 - B1_Mus2 SINE Alu 0 147 1 7 1193 267 128 0 0 chr11 79791708 79791725 -42052131 + (T)n Simple_repeat Simple_repeat 1 17 0 7 1193 24 0 0 0 chr11 79791730 79791754 -42052102 + AT_rich Low_complexity Low_complexity 1 24 0 7 1193 1219 99 27 27 chr11 79791756 79791942 -42051914 - B2_Mm1a SINE B2 -7 186 1 7 1193 979 67 171 51 chr11 79791942 79792100 -42051756 - B2_Mm2 SINE B2 -17 178 2 7 1193 1347 83 30 20 chr11 79792120 79792317 -42051539 - RMER6B LTR ERVK -259 202 4 7 1193 402 232 0 0 chr11 79792317 79792386 -42051470 - RSINE1 SINE B4 -86 79 11 7 1193 219 36 0 0 chr11 79793119 79793147 -42050709 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1193 1157 52 0 0 chr11 79793147 79793281 -42050575 - B1_Mus2 SINE Alu -13 134 1 7 1193 251 350 0 12 chr11 79793402 79793483 -42050373 + RSINE1 SINE B4 16 95 -70 7 1193 423 56 0 0 chr11 79793491 79793545 -42050311 + B1_Mus2 SINE Alu 1 54 -93 7 1193 22 0 0 0 chr11 79793550 79793572 -42050284 + AT_rich Low_complexity Low_complexity 1 22 0 7 1193 323 121 308 43 chr11 79793598 79793715 -42050141 + B2_Mm2 SINE B2 47 194 -1 7 1193 376 209 8 17 chr11 79793750 79793867 -42049989 + GA-rich Low_complexity Low_complexity 2 117 0 7 1193 872 99 7 0 chr11 79793908 79794059 -42049797 + (TG)n Simple_repeat Simple_repeat 1 152 0 7 1193 667 185 42 56 chr11 79794068 79794111 -42049745 - B3 SINE B2 -74 142 100 7 1193 198 0 0 0 chr11 79794111 79794133 -42049723 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1193 667 185 42 56 chr11 79794133 79794188 -42049668 - B3 SINE B2 -117 99 45 7 1193 2546 173 43 70 chr11 79794188 79794772 -42049084 + RLTR12A LTR ERVK 1 568 0 7 1193 667 185 42 56 chr11 79794772 79794815 -42049041 - B3 SINE B2 -172 44 3 7 1193 338 91 36 0 chr11 79794966 79795021 -42048835 + B4A SINE B4 37 93 -199 7 1193 753 183 38 0 chr11 79795025 79795156 -42048700 + B1_Mur3 SINE Alu 1 136 -13 7 1193 317 292 116 7 chr11 79795180 79795318 -42048538 + B4 SINE B4 66 218 -74 7 1193 342 115 0 0 chr11 79795486 79795538 -42048318 + (TTG)n Simple_repeat Simple_repeat 2 53 0 7 1193 808 147 23 0 chr11 79795550 79795679 -42048177 - B1_Mus2 SINE Alu -5 142 11 7 1193 185 196 0 21 chr11 79795685 79795732 -42048124 + CT-rich Low_complexity Low_complexity 2 47 0 7 1193 666 210 81 0 chr11 79795733 79795857 -42047999 - B1_Mur2 SINE Alu -14 135 2 7 1193 1141 42 0 14 chr11 79796025 79796169 -42047687 + B1_Mus1 SINE Alu 7 148 0 7 1193 431 222 56 100 chr11 79796028 79796188 -42047668 + B4A SINE B4 94 246 -46 7 1193 192 77 0 0 chr11 79796188 79796214 -42047642 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 7 1193 336 77 0 0 chr11 79796327 79796379 -42047477 + (TATG)n Simple_repeat Simple_repeat 1 52 0 7 1193 1188 45 0 0 chr11 79796379 79796513 -42047343 - B1_Mm SINE Alu -13 134 1 7 1193 1040 178 91 0 chr11 79796515 79796712 -42047144 - B3 SINE B2 0 216 2 7 1193 733 203 7 20 chr11 79796762 79796913 -42046943 + B1_Mur2 SINE Alu 1 149 0 7 1193 238 200 0 0 chr11 79797035 79797075 -42046781 - PB1D7 SINE Alu -16 104 65 7 1193 633 181 79 14 chr11 79797137 79797277 -42046579 - B1_Mur4 SINE Alu -1 149 1 7 1193 750 261 10 29 chr11 79797503 79797712 -42046144 + RLTR18B LTR ERVK 1 205 -307 7 1193 594 268 91 16 chr11 79797741 79797927 -42045929 + RLTR18B LTR ERVK 306 505 -7 7 1193 270 0 0 0 chr11 79798074 79798104 -42045752 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1193 1056 91 0 0 chr11 79798104 79798236 -42045620 - B1_Mm SINE Alu -13 134 3 7 1193 25 0 0 0 chr11 79798243 79798268 -42045588 + AT_rich Low_complexity Low_complexity 1 25 0 7 1193 2318 176 184 24 chr11 79798302 79798798 -42045058 + RMER15 LTR ERVL 1 575 0 7 1193 340 308 0 53 chr11 79798831 79798944 -42044912 + MLT1A0 LTR MaLR 256 362 -3 7 1193 1239 82 0 0 chr11 79799020 79799167 -42044689 + B1_Mus2 SINE Alu 1 147 0 7 1193 423 0 0 0 chr11 79799171 79799218 -42044638 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1193 597 276 21 0 chr11 79799218 79799363 -42044493 + B1_Mur1 SINE Alu 2 149 0 7 1193 254 377 36 14 chr11 79799608 79799748 -42044108 - Tigger5 DNA MER2_type -2166 240 98 7 1193 472 294 20 127 chr11 79799748 79799993 -42043863 + ID_B1 SINE B4 3 221 -3 7 1193 369 75 0 19 chr11 79799999 79800053 -42043803 + B2_Mm2 SINE B2 1 53 -142 7 1193 213 159 0 0 chr11 79800068 79800112 -42043744 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1193 1217 57 0 0 chr11 79800188 79800328 -42043528 + B1_Mus1 SINE Alu 3 142 -6 7 1193 373 304 17 34 chr11 79800354 79800473 -42043383 + B3A SINE B2 69 185 -13 7 1193 235 160 0 39 chr11 79800475 79800527 -42043329 + (ATG)n Simple_repeat Simple_repeat 3 52 0 7 1193 233 294 39 85 chr11 79800529 79800659 -42043197 + PB1 SINE Alu 1 124 -3 7 1193 360 262 0 0 chr11 79800579 79800663 -42043193 + ID_B1 SINE B4 141 224 0 7 1193 401 292 31 0 chr11 79800674 79800770 -42043086 + RSINE1 SINE B4 1 99 -66 7 1193 336 80 0 0 chr11 79800797 79800820 -42043036 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1193 1143 102 7 0 chr11 79800820 79800967 -42042889 - B1_Mus1 SINE Alu 0 148 1 7 1193 336 80 0 0 chr11 79800967 79800993 -42042863 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1193 432 260 29 0 chr11 79800993 79801097 -42042759 - Tigger5 DNA MER2_type -2294 112 6 7 1193 234 0 0 0 chr11 79801248 79801274 -42042582 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1193 1565 58 0 11 chr11 79801310 79801501 -42042355 - B2_Mm1a SINE B2 -3 190 2 7 1193 260 211 4 0 chr11 79801518 79801584 -42042272 + PB1D10 SINE Alu 70 149 0 8 1193 589 288 80 10 chr11 79801588 79801788 -42042068 + ID_B1 SINE B4 2 215 -9 8 1193 984 94 14 28 chr11 79801825 79801967 -42041889 + B1_Mur4 SINE Alu 1 140 -10 8 1193 234 0 0 0 chr11 79801967 79801993 -42041863 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1193 302 212 41 124 chr11 79802472 79802544 -42041312 - PB1D10 SINE Alu -1 116 52 8 1193 1726 36 0 0 chr11 79802544 79802737 -42041119 - B2_Mm1t SINE B2 0 193 1 8 1193 302 244 53 118 chr11 79802737 79802788 -42041068 - PB1D10 SINE Alu -69 51 2 8 1193 384 22 0 0 chr11 79802853 79802898 -42040958 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1193 1207 69 7 0 chr11 79802997 79803142 -42040714 + B1_Mus2 SINE Alu 1 146 -1 8 1193 538 67 13 0 chr11 79803193 79803268 -42040588 - B1_Mur4 SINE Alu 0 150 75 8 1193 288 0 0 0 chr11 79803779 79803811 -42040045 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1193 1024 67 96 7 chr11 79803998 79804133 -42039723 + B1_Mus2 SINE Alu 1 147 0 8 1193 622 265 36 30 chr11 79805154 79805321 -42038535 + B3 SINE B2 1 168 -48 8 1193 936 81 49 0 chr11 79805330 79805453 -42038403 - B1_Mm SINE Alu -15 132 4 8 1193 1234 48 14 0 chr11 79805598 79805743 -42038113 - B1_Mus2 SINE Alu 0 147 1 8 1193 25 31 0 0 chr11 79806516 79806548 -42037308 + GC_rich Low_complexity Low_complexity 1 32 0 8 1193 278 206 0 14 chr11 79806647 79806716 -42037140 + C-rich Low_complexity Low_complexity 3 70 0 8 1193 217 141 0 59 chr11 79806903 79806971 -42036885 + (CGG)n Simple_repeat Simple_repeat 1 64 0 8 1193 225 83 0 0 chr11 79806993 79807029 -42036827 + (CGG)n Simple_repeat Simple_repeat 1 36 0 8 1193 22 0 0 0 chr11 79808551 79808573 -42035283 + AT_rich Low_complexity Low_complexity 1 22 0 8 1193 1317 41 124 39 chr11 79809495 79809673 -42034183 - B2_Mm1a SINE B2 0 193 1 8 1193 267 310 0 27 chr11 79809761 79809834 -42034022 - ID4_ SINE ID -11 72 2 8 1193 372 22 0 0 chr11 79810007 79810052 -42033804 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1193 382 309 9 9 chr11 79810070 79810181 -42033675 - PB1D10 SINE Alu -6 111 1 8 1193 598 191 0 62 chr11 79810692 79810804 -42033052 - B3 SINE B2 -111 105 1 8 1193 1108 56 21 21 chr11 79810990 79811135 -42032721 - B1_Mus1 SINE Alu 0 148 4 8 1193 302 231 22 124 chr11 79811494 79811583 -42032273 + B1_Mur1 SINE Alu 63 142 -7 8 1193 869 174 14 14 chr11 79811748 79811894 -42031962 + B1_Mur3 SINE Alu 1 146 -3 8 1193 183 42 0 0 chr11 79811894 79811918 -42031938 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1193 221 0 0 33 chr11 79812155 79812185 -42031671 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1193 1037 47 0 0 chr11 79812185 79812313 -42031543 - B1_Mm SINE Alu -11 136 9 8 1193 21 0 0 0 chr11 79812725 79812746 -42031110 + AT_rich Low_complexity Low_complexity 1 21 0 8 1193 1216 171 13 71 chr11 79813032 79813116 -42030740 - URR1B DNA MER1_type 0 225 145 8 1193 1483 72 124 0 chr11 79813116 79813309 -42030547 - L1_Mus1 LINE L1 -1 6566 6350 8 1193 1216 171 13 71 chr11 79813309 79813463 -42030393 - URR1B DNA MER1_type -81 144 1 8 1193 509 203 17 44 chr11 79813533 79813660 -42030196 + B1_Mus2 SINE Alu 19 149 0 8 1193 212 306 0 0 chr11 79813800 79813849 -42030007 - ID SINE ID -150 74 26 8 1193 756 159 13 6 chr11 79813855 79814013 -42029843 + (TA)n Simple_repeat Simple_repeat 1 159 0 8 1193 307 241 38 212 chr11 79814023 79814148 -42029708 - MTD LTR MaLR -267 152 62 8 1193 423 212 212 0 chr11 79814148 79814266 -42029590 - B1_Mus2 SINE Alu 0 147 5 8 1193 307 241 38 212 chr11 79814266 79814324 -42029532 - MTD LTR MaLR -358 61 1 8 1193 713 169 105 23 chr11 79814354 79814487 -42029369 - B1_Mur3 SINE Alu -1 148 5 8 1193 628 250 35 0 chr11 79814618 79814762 -42029094 - B1_Mur1 SINE Alu 0 149 1 8 1193 338 288 278 8 chr11 79814857 79814990 -42028866 - B4A SINE B4 -123 169 1 8 1193 569 144 40 30 chr11 79815027 79815127 -42028729 - B1_Mm SINE Alu 0 147 47 8 1193 1132 95 0 0 chr11 79815386 79815533 -42028323 - B1_Mus2 SINE Alu 0 147 1 8 1193 496 229 186 0 chr11 79816058 79816176 -42027680 - B1_Mur3 SINE Alu -8 141 2 8 1193 795 156 41 34 chr11 79816621 79816767 -42027089 - B1_Mus1 SINE Alu 0 148 2 8 1193 343 294 0 52 chr11 79816961 79817058 -42026798 - B1F1 SINE Alu -25 92 1 8 1193 298 292 0 27 chr11 79817096 79817170 -42026686 - ID2 SINE ID -11 72 1 8 1193 1137 96 7 0 chr11 79817264 79817410 -42026446 - B1_Mus2 SINE Alu 0 147 1 8 1193 286 153 368 23 chr11 79817475 79817562 -42026294 + PB1D9 SINE Alu 4 120 0 8 1193 477 219 193 0 chr11 79817994 79818113 -42025743 + B1F2 SINE Alu 2 143 -6 8 1193 1060 73 73 0 chr11 79818157 79818294 -42025562 - B1_Mus2 SINE Alu 0 147 1 8 1193 251 313 0 56 chr11 79818374 79818445 -42025411 - ID2 SINE ID -2 81 15 8 1193 260 272 95 36 chr11 79818612 79818696 -42025160 - ID_B1 SINE B4 -21 203 115 8 1193 272 263 253 0 chr11 79818893 79818988 -42024868 + RSINE1 SINE B4 5 123 -42 8 1193 864 166 20 46 chr11 79819118 79819270 -42024586 - B1_Mur3 SINE Alu 0 149 2 8 1193 288 294 11 96 chr11 79819679 79819773 -42024083 + B1F2 SINE Alu 10 95 -54 8 1193 278 250 47 0 chr11 79819794 79819858 -42023998 - RSINE1 SINE B4 -7 158 92 8 1193 1365 106 36 21 chr11 79819945 79820137 -42023719 - B2_Mm2 SINE B2 0 195 1 8 1193 964 90 90 0 chr11 79820498 79820631 -42023225 + B1_Mus1 SINE Alu 2 146 -2 8 1193 803 68 265 0 chr11 79820829 79820946 -42022910 - B1_Mur4 SINE Alu -1 149 2 8 1193 1498 34 80 0 chr11 79821304 79821318 -42022538 - B2_Mm1a SINE B2 -4 189 176 8 1193 243 0 0 0 chr11 79821318 79821345 -42022511 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 8 1193 1498 34 80 0 chr11 79821345 79821505 -42022351 - B2_Mm1a SINE B2 -18 175 3 8 1193 255 194 80 40 chr11 79821759 79821834 -42022022 + MT2B LTR ERVL 163 240 -361 8 1193 491 211 48 9 chr11 79821788 79821893 -42021963 + B1_Mur1 SINE Alu 41 149 0 8 1193 419 239 169 56 chr11 79821913 79822055 -42021801 + RSINE1 SINE B4 2 159 -6 8 1193 21 36 0 0 chr11 79822407 79822435 -42021421 + AT_rich Low_complexity Low_complexity 1 28 0 8 1193 189 0 0 0 chr11 79822516 79822537 -42021319 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 8 1193 1151 70 7 27 chr11 79822540 79822688 -42021168 - B1_Mus2 SINE Alu -2 145 1 8 149 1298 85 51 0 chr11 79822698 79822874 -42020982 - B2_Mm2 SINE B2 -9 186 2 8 1194 485 46 15 0 chr11 79822920 79822985 -42020871 + L1_Mus2 LINE L1 6501 6566 0 8 1194 497 229 9 45 chr11 79823306 79823416 -42020440 - B1_Mur2 SINE Alu -43 106 1 8 1194 306 317 0 98 chr11 79823416 79823445 -42020411 - B4 SINE B4 -208 84 67 8 1194 1336 27 0 0 chr11 79823852 79823999 -42019857 + B1_Mm SINE Alu 1 147 0 8 1194 204 97 0 0 chr11 79824000 79824031 -42019825 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1194 365 157 43 98 chr11 79824235 79824327 -42019529 + PB1D9 SINE Alu 22 108 -12 8 1194 183 42 0 0 chr11 79824537 79824561 -42019295 + (CATG)n Simple_repeat Simple_repeat 4 27 0 8 1194 339 89 0 0 chr11 79824764 79824820 -42019036 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 1194 973 66 29 0 chr11 79824835 79824972 -42018884 - ORR1A2 LTR MaLR -58 269 129 8 1194 1217 50 14 0 chr11 79824986 79825126 -42018730 - B1_Mus1 SINE Alu -6 142 1 8 1194 537 16 0 0 chr11 79825183 79825245 -42018611 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 8 1194 531 0 0 0 chr11 79825288 79825347 -42018509 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 8 1194 1083 128 0 6 chr11 79825347 79825509 -42018347 - B2_Mm2 SINE B2 -33 162 2 8 1194 220 186 0 63 chr11 79825831 79825859 -42017997 + T-rich Low_complexity Low_complexity 33 59 0 8 1194 1249 48 0 20 chr11 79825859 79826008 -42017848 - B1_Mus1 SINE Alu -1 147 2 8 1194 572 212 80 7 chr11 79826012 79826150 -42017706 - B1_Mus1 SINE Alu 0 148 1 8 1194 220 186 0 63 chr11 79826150 79826179 -42017677 + T-rich Low_complexity Low_complexity 4 32 0 8 1194 290 200 0 48 chr11 79826179 79826242 -42017614 - ID4_ SINE ID 0 83 24 8 1194 312 322 197 52 chr11 79826304 79826497 -42017359 - ID_B1 SINE B4 -1 223 3 8 1194 351 298 19 28 chr11 79827233 79827340 -42016516 + PB1D10 SINE Alu 2 107 -10 8 1194 203 300 0 0 chr11 79827496 79827546 -42016310 + CT-rich Low_complexity Low_complexity 6 55 0 8 1194 494 298 82 25 chr11 79827875 79828049 -42015807 + B3 SINE B2 10 198 -18 8 1194 904 102 17 0 chr11 79828049 79828167 -42015689 + PB1D9 SINE Alu 1 120 0 8 1194 494 298 82 25 chr11 79828167 79828188 -42015668 + B3 SINE B2 199 216 0 8 1194 246 255 160 20 chr11 79828282 79828382 -42015474 + B1F SINE Alu 21 134 -15 8 1194 559 177 86 26 chr11 79828447 79828563 -42015293 + B1_Mus1 SINE Alu 6 128 -20 8 1194 210 403 0 0 chr11 79829364 79829436 -42014420 + ID2 SINE ID 1 72 -11 8 1194 558 0 0 0 chr11 79829560 79829622 -42014234 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1194 26 30 0 0 chr11 79829661 79829694 -42014162 + AT_rich Low_complexity Low_complexity 1 33 0 8 1194 1208 88 0 0 chr11 79829705 79829852 -42014004 - B1_Mus2 SINE Alu 0 147 1 8 1194 243 0 0 0 chr11 79829875 79829902 -42013954 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1194 778 164 31 0 chr11 79829936 79830064 -42013792 - B1_Mur4 SINE Alu -18 132 1 8 1194 673 126 0 0 chr11 79830154 79830257 -42013599 + B1_Mus2 SINE Alu 1 103 -44 8 1194 1755 31 0 0 chr11 79830277 79830469 -42013387 - B2_Mm1t SINE B2 0 193 2 9 1194 189 107 0 0 chr11 79830738 79830766 -42013090 + (TTA)n Simple_repeat Simple_repeat 2 29 0 9 1194 286 258 86 50 chr11 79830868 79831007 -42012849 - L1MD3 LINE L1 -953 7089 6915 9 1194 1257 126 48 16 chr11 79831436 79831622 -42012234 - B2_Mm2 SINE B2 -2 193 2 9 1194 214 306 14 0 chr11 79831672 79831744 -42012112 + PB1D10 SINE Alu 43 115 -2 9 1194 965 184 52 0 chr11 79831795 79831969 -42011887 - B2_Mm1t SINE B2 -9 184 2 9 1194 1053 124 21 0 chr11 79832042 79832187 -42011669 - B1_Mus1 SINE Alu 0 148 1 9 1194 216 0 0 0 chr11 79832205 79832229 -42011627 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1194 1192 48 13 26 chr11 79832231 79832382 -42011474 - B1_Mur4 SINE Alu 0 150 2 9 1194 263 302 59 17 chr11 79832417 79832535 -42011321 + L1MC LINE L1 5421 5543 -2339 9 1194 342 83 0 0 chr11 79832590 79832638 -42011218 - B2_Mm2 SINE B2 -147 48 1 9 1194 215 244 24 0 chr11 79832803 79832844 -42011012 + ID_B1 SINE B4 82 123 -101 9 1194 290 95 277 106 chr11 79832811 79832905 -42010951 + PB1D9 SINE Alu 10 119 -1 9 1194 1136 102 40 6 chr11 79833418 79833595 -42010261 + B2_Mm1a SINE B2 4 186 -7 9 1194 426 291 97 0 chr11 79833599 79833733 -42010123 - B1_Mur2 SINE Alu -1 148 2 9 1194 1164 68 0 0 chr11 79834067 79834214 -42009642 + B1_Mus1 SINE Alu 2 148 0 9 1194 280 288 78 29 chr11 79834428 79834537 -42009319 - B1_Mur4 SINE Alu -37 112 2 9 1194 33 56 0 0 chr11 79834777 79834831 -42009025 + AT_rich Low_complexity Low_complexity 1 54 0 9 1194 261 177 47 7 chr11 79834838 79834946 -42008910 - B2_Mm2 SINE B2 -73 120 1 9 1194 728 131 168 0 chr11 79834967 79835104 -42008752 - B2_Mm1t SINE B2 -31 162 3 9 1194 993 92 42 14 chr11 79835129 79835272 -42008584 - B1_Mm SINE Alu 0 147 1 9 1194 916 128 146 0 chr11 79835276 79835440 -42008416 - B2_Mm2 SINE B2 -6 189 2 9 1194 238 200 0 0 chr11 79835471 79835516 -42008340 - B3 SINE B2 -171 45 1 9 1194 654 121 263 17 chr11 79835925 79836043 -42007813 + B1_Mus1 SINE Alu 1 147 -1 9 1194 210 259 0 94 chr11 79836288 79836352 -42007504 + ID4_ SINE ID 11 68 -15 9 1194 1534 59 0 0 chr11 79836436 79836623 -42007233 + B2_Mm1a SINE B2 2 188 -5 9 1194 952 109 0 26 chr11 79836641 79836792 -42007064 + B1_Mus1 SINE Alu 2 148 0 9 1194 461 206 11 0 chr11 79837001 79837093 -42006763 + RSINE1 SINE B4 49 141 -24 9 1194 311 180 0 0 chr11 79837683 79837744 -42006112 + B2_Mm2 SINE B2 2 62 -133 9 1194 508 75 0 48 chr11 79837733 79837817 -42006039 + B2_Mm1t SINE B2 100 179 -14 9 1194 1035 103 52 52 chr11 79837920 79838094 -42005762 - B2_Mm2 SINE B2 -19 176 3 9 1194 227 278 10 100 chr11 79838137 79838237 -42005619 + MT2B LTR ERVL 166 256 -345 9 1194 571 229 8 0 chr11 79838148 79838266 -42005590 + B1_Mus1 SINE Alu 13 131 -17 9 1194 21 36 0 0 chr11 79838934 79838962 -42004894 + AT_rich Low_complexity Low_complexity 1 28 0 9 1194 1167 55 0 0 chr11 79839043 79839189 -42004667 + B1_Mus2 SINE Alu 2 147 0 9 1194 207 69 0 0 chr11 79839190 79839219 -42004637 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 1194 298 315 44 26 chr11 79839502 79839616 -42004240 - RSINE1 SINE B4 -5 160 45 9 1194 804 172 7 33 chr11 79839682 79839832 -42004024 - B1_Mur3 SINE Alu -1 148 3 9 1194 673 129 250 0 chr11 79840036 79840152 -42003704 + B1_Mus1 SINE Alu 2 146 -2 9 1194 528 239 150 6 chr11 79840477 79840637 -42003219 - B3A SINE B2 -15 183 1 9 1194 247 167 0 32 chr11 79840643 79840705 -42003151 + T-rich Low_complexity Low_complexity 3 62 0 9 1194 323 152 0 43 chr11 79840711 79840780 -42003076 - B1_Mm SINE Alu -2 145 80 9 1194 2488 169 130 34 chr11 79840780 79841374 -42002482 - RMER19A LTR ERVK 0 737 87 9 1194 228 100 0 0 chr11 79841374 79841414 -42002442 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1194 682 63 0 0 chr11 79841414 79841509 -42002347 - B1_Mm SINE Alu 0 147 53 9 1194 1086 96 29 108 chr11 79841513 79841726 -42002130 + B2_Mm2 SINE B2 1 195 0 9 1194 374 50 67 0 chr11 79841722 79841782 -42002074 - B1_Mus2 SINE Alu -83 64 1 9 1194 613 108 10 10 chr11 79841782 79841882 -42001974 - RMER19A LTR ERVK -637 100 1 9 1194 391 271 0 0 chr11 79841882 79841966 -42001890 - B1_Mus2 SINE Alu -62 85 2 9 1194 216 0 0 0 chr11 79842026 79842050 -42001806 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1194 1055 95 0 0 chr11 79842050 79842187 -42001669 - B1_Mus2 SINE Alu -10 137 1 9 1194 423 155 127 64 chr11 79842211 79842321 -42001535 - B1_Mus2 SINE Alu -1 146 30 9 1194 1671 26 5 0 chr11 79842899 79843091 -42000765 - B2_Mm1t SINE B2 0 193 1 9 1194 23 33 0 0 chr11 79843160 79843190 -42000666 + AT_rich Low_complexity Low_complexity 1 30 0 9 1194 742 176 73 0 chr11 79843244 79843380 -42000476 + B1_Mm SINE Alu 2 147 0 9 1194 283 275 336 0 chr11 79843668 79843825 -42000031 - B3 SINE B2 -7 209 1 9 1194 586 296 0 7 chr11 79844038 79844184 -41999672 - B1_Mur4 SINE Alu 0 150 6 9 1194 534 16 0 0 chr11 79844410 79844473 -41999383 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1194 480 248 18 0 chr11 79844475 79844588 -41999268 - B3A SINE B2 -83 115 1 9 1194 251 291 445 0 chr11 79844886 79845023 -41998833 + B3 SINE B2 6 203 -13 9 1194 573 182 62 96 chr11 79847960 79848106 -41995750 - B1_Mur3 SINE Alu -8 141 1 9 1194 1456 87 0 5 chr11 79848117 79848313 -41995543 - B2_Mm2 SINE B2 0 195 1 9 1194 271 263 14 59 chr11 79848420 79848494 -41995362 - RSINE1 SINE B4 -216 76 6 9 1194 765 102 25 17 chr11 79848510 79848630 -41995226 - B1_Mus1 SINE Alu 0 148 28 9 1194 294 293 27 0 chr11 79848674 79848749 -41995107 + B4 SINE B4 76 152 -140 9 1194 462 155 59 40 chr11 79848691 79848792 -41995064 + PB1D9 SINE Alu 10 112 -8 9 1194 476 286 23 23 chr11 79849060 79849189 -41994667 + B3A SINE B2 1 129 -69 9 1194 544 253 112 6 chr11 79849225 79849404 -41994452 + B3 SINE B2 2 199 -17 9 1194 599 271 36 73 chr11 79849710 79849929 -41993927 + ID_B1 SINE B4 12 222 -2 9 1194 266 306 142 44 chr11 79850063 79850176 -41993680 - RSINE1 SINE B4 -21 144 21 9 1194 889 51 0 0 chr11 79850406 79850523 -41993333 + B1_Mus2 SINE Alu 3 119 -28 9 1194 22 35 0 0 chr11 79850566 79850595 -41993261 + AT_rich Low_complexity Low_complexity 1 29 0 9 1194 276 148 19 0 chr11 79850650 79850704 -41993152 - B2_Mm2 SINE B2 -94 101 47 9 1194 551 152 252 26 chr11 79850810 79850965 -41992891 + B2_Mm2 SINE B2 2 191 -4 9 1194 202 186 23 0 chr11 79850966 79851009 -41992847 - MER5B DNA MER1_type -133 45 2 9 1194 627 229 111 16 chr11 79851142 79851389 -41992467 + Lx4A LINE L1 6688 6995 -63 9 1194 698 12 0 0 chr11 79851391 79851477 -41992379 + L1Md_T LINE L1 6497 6582 0 9 1194 797 217 33 22 chr11 79851866 79852050 -41991806 + B3A SINE B2 4 189 -9 9 1194 750 109 0 52 chr11 79852345 79852480 -41991376 + B1_Mus2 SINE Alu 14 141 -6 9 1194 207 0 0 0 chr11 79852483 79852506 -41991350 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 9 1194 387 203 0 0 chr11 79852584 79852653 -41991203 + RSINE1 SINE B4 11 79 -86 9 1194 1621 38 0 0 chr11 79852922 79853108 -41990748 - B2_Mm1a SINE B2 -6 187 2 9 1194 939 142 7 7 chr11 79853109 79853258 -41990598 - B1_Mur4 SINE Alu 0 150 2 9 1194 661 240 92 12 chr11 79853265 79853438 -41990418 - B3A SINE B2 -8 190 4 9 1194 959 126 14 0 chr11 79853572 79853715 -41990141 - B1_Mus1 SINE Alu 0 148 4 9 1194 1056 58 0 0 chr11 79853744 79853883 -41989973 - B1_Mus1 SINE Alu 0 148 10 9 1194 268 303 12 41 chr11 79853950 79854122 -41989734 + (TATG)n Simple_repeat Simple_repeat 1 167 0 9 1194 215 346 0 25 chr11 79854123 79854203 -41989653 - B3A SINE B2 -36 162 85 9 1194 1152 194 9 9 chr11 79854237 79854450 -41989406 - B3 SINE B2 -3 213 1 9 1194 220 87 43 21 chr11 79854459 79854506 -41989350 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 9 1194 1010 76 23 0 chr11 79854585 79854716 -41989140 + B1_Mus1 SINE Alu 3 136 -12 9 1194 1235 61 0 0 chr11 79854736 79854901 -41988955 + B2_Mm2 SINE B2 1 165 -30 9 1194 439 240 20 37 chr11 79854900 79855089 -41988767 - B3 SINE B2 -9 186 2 9 1194 324 252 289 21 chr11 79855470 79855660 -41988196 + B4A SINE B4 1 241 -51 9 1194 780 129 48 0 chr11 79855668 79855792 -41988064 + B3 SINE B2 1 130 -86 9 1194 258 279 29 0 chr11 79856058 79856126 -41987730 - B4A SINE B4 -192 100 31 9 1194 557 218 72 39 chr11 79856495 79856648 -41987208 - B3A SINE B2 -2 196 39 9 1194 219 176 20 0 chr11 79856648 79856699 -41987157 + T-rich Low_complexity Low_complexity 2 53 0 9 1194 779 76 235 0 chr11 79856699 79856818 -41987038 - B1_Mus1 SINE Alu 0 148 2 9 1194 259 327 10 10 chr11 79856873 79856975 -41986881 - PB1D10 SINE Alu -6 111 10 9 1194 519 214 0 67 chr11 79857318 79857438 -41986418 - RSINE1 SINE B4 -29 136 25 9 1194 654 213 45 13 chr11 79857534 79857691 -41986165 - ID_B1 SINE B4 -54 170 9 1 1194 562 194 10 0 chr11 79857720 79857823 -41986033 - B1_Mm SINE Alu -43 104 1 1 1194 345 238 65 87 chr11 79857823 79857859 -41985997 - B4 SINE B4 -200 92 60 1 1194 226 238 202 0 chr11 79858352 79858436 -41985420 + MTD LTR MaLR 108 208 -211 1 1194 1189 55 0 0 chr11 79858436 79858581 -41985275 + B1_Mus2 SINE Alu 1 145 -2 1 1194 22 0 0 0 chr11 79858613 79858635 -41985221 + AT_rich Low_complexity Low_complexity 1 22 0 1 1194 838 54 0 0 chr11 79858692 79858803 -41985053 + B1_Mus2 SINE Alu 37 147 0 1 1194 736 170 13 26 chr11 79858840 79858991 -41984865 + B1_Mur3 SINE Alu 1 149 0 1 1194 424 117 26 0 chr11 79858993 79859070 -41984786 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1194 440 152 98 0 chr11 79859078 79859170 -41984686 + B1F2 SINE Alu 47 147 -2 1 1194 267 174 82 0 chr11 79859239 79859337 -41984519 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 1194 195 42 0 0 chr11 79859463 79859487 -41984369 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 1 1194 233 250 57 86 chr11 79859488 79859593 -41984263 - B1_Mus1 SINE Alu -11 137 36 1 1194 983 47 0 0 chr11 79859517 79859646 -41984210 + B1_Mm SINE Alu 19 147 0 1 1194 231 36 0 0 chr11 79859776 79859804 -41984052 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 1 1194 837 36 0 0 chr11 79859805 79859915 -41983941 - B1_Mus2 SINE Alu -7 140 31 1 1194 492 239 18 0 chr11 79861965 79862078 -41981778 - Lx9 LINE L1 -950 6694 6580 1 1194 1353 175 261 3 chr11 79862481 79862814 -41981042 + MTC LTR MaLR 3 421 0 1 1194 1022 53 0 0 chr11 79862904 79863035 -41980821 - B1_Mm SINE Alu -8 139 9 1 1194 469 244 96 16 chr11 79863062 79863187 -41980669 - B1F SINE Alu -13 136 2 1 1194 1427 67 17 0 chr11 79863358 79863536 -41980320 + B2_Mm2 SINE B2 1 181 -14 1 1194 244 260 26 13 chr11 79863947 79864025 -41979831 - PB1D10 SINE Alu -10 107 29 1 1194 547 219 161 19 chr11 79864079 79864284 -41979572 - Lx8 LINE L1 0 7473 7240 1 1194 211 316 53 0 chr11 79864368 79864444 -41979412 - ID4_ SINE ID -1 82 3 1 1194 348 309 58 52 chr11 79864589 79864693 -41979163 + ID_B1 SINE B4 6 107 -117 1 1194 706 179 55 41 chr11 79864693 79864839 -41979017 - B1_Mus1 SINE Alu 0 148 1 1 1194 348 309 58 52 chr11 79864839 79864908 -41978948 + ID_B1 SINE B4 108 180 -44 1 1194 236 146 39 59 chr11 79864872 79864914 -41978942 + PB1D10 SINE Alu 64 107 -10 1 1194 261 57 0 0 chr11 79864914 79864949 -41978907 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1194 483 278 60 0 chr11 79864971 79865122 -41978734 + RSINE1 SINE B4 2 161 -4 1 1194 435 272 54 31 chr11 79865197 79865326 -41978530 + B1F SINE Alu 1 132 -17 1 1194 357 82 0 0 chr11 79865506 79865555 -41978301 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 1 1194 1117 89 0 0 chr11 79865556 79865713 -41978143 - B2_Mm2 SINE B2 -37 158 2 1 1194 1032 198 73 8 chr11 79865807 79866072 -41977784 + MTD LTR MaLR 138 404 -15 1 1194 638 223 57 0 chr11 79866212 79866369 -41977487 + ID_B1 SINE B4 55 220 -4 1 1194 363 159 470 45 chr11 79866421 79866553 -41977303 + B3A SINE B2 1 188 -10 1 1194 455 324 25 80 chr11 79866719 79866920 -41976936 - RMER30 DNA MER1_type 0 202 13 1 1194 396 257 64 0 chr11 79867637 79867746 -41976110 + MIR SINE MIR 28 143 -119 1 1194 410 282 26 0 chr11 79867798 79867915 -41975941 + ID_B1 SINE B4 13 132 -92 1 1194 225 359 45 36 chr11 79868637 79868747 -41975109 + RSINE1 SINE B4 2 112 -53 1 1194 684 67 0 0 chr11 79868798 79868888 -41974968 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 1 1194 960 78 0 0 chr11 79868910 79869039 -41974817 - B2_Mm2 SINE B2 -65 130 2 1 1194 290 252 34 93 chr11 79869407 79869525 -41974331 - PB1D10 SINE Alu -1 116 6 1 1194 764 204 35 0 chr11 79869674 79869816 -41974040 + B1_Mur1 SINE Alu 1 147 -2 1 1194 237 305 0 48 chr11 79870381 79870443 -41973413 + tRNA-Ala-GCY_ tRNA tRNA 10 68 -7 1 1194 330 258 97 0 chr11 79870468 79870561 -41973295 + B3A SINE B2 5 106 -92 1 1194 1364 85 17 0 chr11 79870631 79870807 -41973049 - B2_Mm2 SINE B2 -15 180 2 1 1194 274 273 145 19 chr11 79870856 79870964 -41972892 + PB1 SINE Alu 3 115 -34 1 1194 490 216 79 26 chr11 79871663 79871777 -41972079 - PB1D7 SINE Alu 0 120 1 1 1194 214 289 56 0 chr11 79871793 79871883 -41971973 - PB1D10 SINE Alu -6 111 17 1 1194 23 33 0 0 chr11 79872023 79872053 -41971803 + AT_rich Low_complexity Low_complexity 1 30 0 1 1194 509 252 51 15 chr11 79872118 79872255 -41971601 - B1_Mur1 SINE Alu 0 149 8 1 1194 21 0 0 0 chr11 79872520 79872541 -41971315 + AT_rich Low_complexity Low_complexity 1 21 0 1 1194 195 100 0 0 chr11 79872541 79872571 -41971285 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 1 1194 306 315 0 52 chr11 79873078 79873175 -41970681 + ID_B1 SINE B4 80 171 -53 1 1194 369 288 26 7 chr11 79873090 79873205 -41970651 + B1F1 SINE Alu 6 117 0 1 1194 519 248 40 0 chr11 79874040 79874165 -41969691 - RSINE1 SINE B4 -31 134 5 1 1194 900 43 0 0 chr11 79874205 79874321 -41969535 - B1_Mus2 SINE Alu -5 142 27 1 1194 384 235 0 0 chr11 79874485 79874570 -41969286 + B1F SINE Alu 18 102 -47 1 1194 807 240 7 0 chr11 79874721 79874871 -41968985 - RSINE1 SINE B4 -13 152 2 1 1194 442 257 28 0 chr11 79874950 79875059 -41968797 + ID_B1 SINE B4 112 223 -1 1 1194 231 36 0 0 chr11 79875061 79875089 -41968767 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1194 747 198 165 0 chr11 79875093 79875275 -41968581 + B3 SINE B2 1 212 -4 1 1194 1279 123 37 0 chr11 79875279 79875466 -41968390 + B2_Mm2 SINE B2 2 195 0 1 1194 534 149 0 0 chr11 79875466 79875555 -41968301 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 1 1194 243 0 0 0 chr11 79876154 79876181 -41967675 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1194 848 87 158 0 chr11 79876181 79876308 -41967548 - B1_Mm SINE Alu 0 147 1 1 1194 3049 36 74 10 chr11 79876349 79876742 -41967114 + L1Md_F3 LINE L1 6167 6584 0 1 1194 1146 96 78 0 chr11 79877020 79877187 -41966669 + B2_Mm2 SINE B2 2 181 -14 1 1194 333 306 10 20 chr11 79877279 79877379 -41966477 + RSINE1 SINE B4 3 101 -64 1 1194 341 206 16 0 chr11 79878023 79878086 -41965770 - ID4_ SINE ID -6 77 14 1 1194 255 327 84 28 chr11 79878116 79878223 -41965633 - PB1D10 SINE Alu -2 115 3 1 1194 296 320 0 0 chr11 79878344 79878422 -41965434 + PB1D10 SINE Alu 1 78 -39 1 1194 279 252 112 0 chr11 79878448 79878555 -41965301 - L1MA9 LINE L1 -37 6275 6157 1 1194 598 195 144 0 chr11 79878586 79878704 -41965152 - B1_Mus2 SINE Alu -12 135 1 1 1194 333 0 0 0 chr11 79878738 79878775 -41965081 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1194 481 269 9 0 chr11 79878858 79878966 -41964890 - RSINE1 SINE B4 -54 111 3 1 1194 696 256 88 4 chr11 79878979 79879242 -41964614 - L1MA9 LINE L1 -157 6155 5871 1 1194 243 0 0 0 chr11 79879321 79879348 -41964508 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1194 226 341 22 11 chr11 79879379 79879471 -41964385 - B4A SINE B4 -40 252 160 1 1194 1195 41 0 20 chr11 79879789 79879938 -41963918 + B1_Mm SINE Alu 2 147 0 1 1194 1363 87 5 11 chr11 79879964 79880151 -41963705 + B2_Mm1a SINE B2 1 186 -7 1 1194 554 196 102 48 chr11 79880243 79880265 -41963591 + ID_B1 SINE B4 50 221 0 1 1194 962 92 7 0 chr11 79880265 79880406 -41963450 + B1_Mus1 SINE Alu 7 148 0 1 1194 318 50 0 0 chr11 79880548 79880588 -41963268 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1194 249 33 0 0 chr11 79880618 79880648 -41963208 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1194 725 150 47 0 chr11 79880650 79880777 -41963079 + B1_Mus1 SINE Alu 16 148 0 1 1194 340 274 237 38 chr11 79880865 79881051 -41962805 - ID_B1 SINE B4 -1 223 1 1 1194 308 234 8 159 chr11 79881767 79881899 -41961957 + B1F2 SINE Alu 3 114 -35 1 1194 228 182 0 0 chr11 79882027 79882071 -41961785 + T-rich Low_complexity Low_complexity 3 46 0 1 1194 366 171 11 54 chr11 79882074 79882167 -41961689 - PB1D9 SINE Alu -21 99 11 1 1194 867 173 214 0 chr11 79882333 79882506 -41961350 + B3 SINE B2 1 210 -6 1 1194 1256 41 0 0 chr11 79882556 79882703 -41961153 + B1_Mus1 SINE Alu 2 148 0 1 1194 1484 61 0 6 chr11 79882720 79882902 -41960954 - B2_Mm2 SINE B2 -14 181 1 1 1194 1331 24 129 6 chr11 79882942 79883113 -41960743 + B2_Mm1t SINE B2 2 193 0 1 1194 317 98 0 0 chr11 79883120 79883161 -41960695 - MurSatRep1 Unknown Unknown -1871 266 226 1 1194 513 233 58 0 chr11 79883165 79883285 -41960571 - B1F1 SINE Alu -13 136 10 1 1194 821 153 203 40 chr11 79883534 79883711 -41960145 + B3 SINE B2 1 206 -10 1 1194 230 333 53 11 chr11 79883787 79883881 -41959975 + PB1D10 SINE Alu 3 100 -17 1 1194 347 272 23 97 chr11 79884178 79884353 -41959503 - RSINE1 SINE B4 0 165 4 1 1194 474 170 70 18 chr11 79884383 79884497 -41959359 - PB1D9 SINE Alu 0 120 1 1 1194 187 337 82 24 chr11 79884501 79884586 -41959270 - MIRc SINE MIR -70 198 109 1 1194 460 47 0 15 chr11 79884592 79884657 -41959199 + B1_Mus1 SINE Alu 2 65 -83 1 1194 528 261 156 0 chr11 79884680 79884860 -41958996 + B3 SINE B2 1 208 -8 1 1194 569 273 27 60 chr11 79884879 79885062 -41958794 + B3 SINE B2 3 179 -37 1 1194 254 172 15 30 chr11 79885104 79885119 -41958737 + A-rich Low_complexity Low_complexity 2 16 0 1 1194 980 117 20 14 chr11 79885119 79885266 -41958590 + B1_Mur4 SINE Alu 3 150 0 1 1194 254 172 15 30 chr11 79885266 79885316 -41958540 + A-rich Low_complexity Low_complexity 17 66 0 1 1194 304 202 17 139 chr11 79885380 79885495 -41958361 + B3 SINE B2 2 102 -114 1 1194 524 219 0 0 chr11 79885506 79885611 -41958245 - B1F2 SINE Alu -44 105 1 1 1194 1218 61 0 0 chr11 79886444 79886591 -41957265 + B1_Mus2 SINE Alu 1 147 0 1 1194 560 211 36 43 chr11 79886909 79887048 -41956808 + B1_Mur2 SINE Alu 12 149 0 1 1194 293 231 141 11 chr11 79887114 79887206 -41956650 - PB1D10 SINE Alu -8 109 6 1 1194 587 265 53 102 chr11 79887361 79887377 -41956479 - B3A SINE B2 -1 197 182 1 1194 318 106 0 0 chr11 79887377 79887424 -41956432 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1194 587 265 53 102 chr11 79887424 79887613 -41956243 - B3A SINE B2 -17 181 2 1 1194 250 307 140 0 chr11 79887637 79887751 -41956105 - MER5A1 DNA MER1_type -35 131 2 1 1194 1506 63 10 26 chr11 79888398 79888593 -41955263 - B2_Mm1t SINE B2 -1 192 1 1 1194 1326 130 0 5 chr11 79888631 79888824 -41955032 - B2_Mm2 SINE B2 -2 193 2 1 1194 1514 84 11 0 chr11 79888910 79889101 -41954755 + B2_Mm1t SINE B2 1 193 0 1 1194 339 256 111 0 chr11 79889207 79889297 -41954559 + ID_B1 SINE B4 125 224 0 1 1194 800 76 246 0 chr11 79889430 79889548 -41954308 - B1_Mus1 SINE Alu -1 147 1 1 1194 869 148 41 27 chr11 79889618 79889764 -41954092 - B1_Mur4 SINE Alu 0 150 3 1 1194 756 186 246 17 chr11 79889837 79890012 -41953844 + B3 SINE B2 2 216 0 1 1194 580 277 70 0 chr11 79890114 79890327 -41953529 + L1MB7 LINE L1 5639 5866 -318 1 1194 261 57 0 0 chr11 79890350 79890385 -41953471 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1194 887 129 56 35 chr11 79890393 79890537 -41953319 - B1_Mus1 SINE Alu -1 147 1 1 1194 284 275 37 12 chr11 79890539 79890620 -41953236 + L1MB7 LINE L1 5860 5943 -235 1 1194 652 257 13 13 chr11 79890646 79890796 -41953060 + ID_B1 SINE B4 73 222 -2 1 1194 914 150 53 111 chr11 79890979 79891204 -41952652 - B3 SINE B2 -3 213 2 1 1194 1006 55 148 0 chr11 79891249 79891377 -41952479 + B1_Mus2 SINE Alu 1 147 0 1 1194 248 80 0 57 chr11 79891377 79891430 -41952426 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1194 350 258 0 0 chr11 79891487 79891553 -41952303 + ID4 SINE ID 2 67 -16 1 1194 598 205 29 36 chr11 79892482 79892619 -41951237 + B1F SINE Alu 1 136 -13 1 1194 1327 77 22 0 chr11 79892642 79892824 -41951032 + B2_Mm2 SINE B2 10 195 0 1 1194 648 196 0 0 chr11 79892825 79892932 -41950924 + B1_Mus1 SINE Alu 37 143 -5 1 1194 28 0 0 0 chr11 79892939 79892967 -41950889 + AT_rich Low_complexity Low_complexity 1 28 0 1 1194 29 47 0 0 chr11 79894216 79894259 -41949597 + GC_rich Low_complexity Low_complexity 1 43 0 1 1194 225 0 0 0 chr11 79895715 79895740 -41948116 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1 1194 227 276 10 58 chr11 79895749 79895802 -41948054 + A-rich Low_complexity Low_complexity 1 49 0 1 1194 596 178 153 15 chr11 79895802 79895933 -41947923 + B1_Mur4 SINE Alu 1 149 -1 1 1194 227 276 10 58 chr11 79895933 79895983 -41947873 + A-rich Low_complexity Low_complexity 50 99 0 1 1194 1131 241 5 0 chr11 79896237 79896449 -41947407 + B3 SINE B2 1 213 -3 1 1194 1624 42 16 5 chr11 79896457 79896648 -41947208 + B2_Mm2 SINE B2 1 193 -2 1 1194 576 229 2 22 chr11 79896671 79896804 -41947052 + B1_Mus1 SINE Alu 1 125 -24 1 1194 496 256 51 36 chr11 79896822 79896960 -41946896 + B1F1 SINE Alu 1 140 -9 1 1194 252 212 10 150 chr11 79896981 79897011 -41946845 + ID SINE ID 11 37 -187 1 1194 2033 178 37 11 chr11 79897011 79897385 -41946471 - ORR1C2 LTR MaLR 0 384 1 1 1194 334 203 0 92 chr11 79897385 79897430 -41946426 + ID4_ SINE ID 37 79 -4 1 1194 252 212 10 150 chr11 79897430 79897454 -41946402 + ID_B1 SINE B4 38 96 -128 1 1194 396 103 0 0 chr11 79897609 79897667 -41946189 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1194 519 237 10 40 chr11 79897876 79898000 -41945856 - B1F2 SINE Alu -20 130 2 1 1194 803 90 0 8 chr11 79898014 79898137 -41945719 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1 1194 669 212 97 36 chr11 79898163 79898359 -41945497 - B3 SINE B2 -8 208 1 1 1194 270 136 0 0 chr11 79898441 79898485 -41945371 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 1 1194 369 0 0 0 chr11 79898605 79898646 -41945210 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1194 596 239 0 9 chr11 79898661 79898771 -41945085 - RSINE1 SINE B4 -36 129 21 1 1194 503 155 113 0 chr11 79898878 79898975 -41944881 - B1_Mus2 SINE Alu -37 110 3 1 1194 234 209 25 173 chr11 79899256 79899337 -41944519 + ID4 SINE ID 15 83 0 1 1194 486 301 57 31 chr11 79899349 79899541 -41944315 + B3A SINE B2 1 197 -1 1 1194 781 144 129 0 chr11 79899549 79899681 -41944175 + B1_Mur4 SINE Alu 1 149 -1 1 1194 1275 126 0 10 chr11 79899739 79899909 -41943947 + B2_Mm2 SINE B2 3 171 -24 1 1194 1593 22 43 16 chr11 79899909 79900097 -41943759 + B2_Mm1a SINE B2 1 193 0 1 1194 1275 126 0 10 chr11 79900097 79900118 -41943738 + B2_Mm2 SINE B2 172 192 -3 1 1194 703 153 137 0 chr11 79900125 79900256 -41943600 + B1_Mur3 SINE Alu 1 149 0 1 1194 231 36 0 0 chr11 79900304 79900332 -41943524 + (C)n Simple_repeat Simple_repeat 1 28 0 1 1194 902 36 0 0 chr11 79900332 79900442 -41943414 - B1_Mm SINE Alu -13 134 25 1 1194 683 282 7 0 chr11 79900766 79900908 -41942948 - ID_B1 SINE B4 0 224 82 1 1194 307 180 0 0 chr11 79900909 79900959 -41942897 - HAL1-3A_ME LINE L1 -834 2024 1975 1 1194 650 222 0 45 chr11 79900968 79901100 -41942756 - B3 SINE B2 -13 203 78 1 1194 282 276 63 24 chr11 79901098 79901224 -41942632 - B4A SINE B4 -94 198 68 1 1194 700 280 4 3 chr11 79901310 79901499 -41942357 - B3A SINE B2 0 216 27 1 1194 1153 71 7 0 chr11 79901525 79901666 -41942190 - B1_Mus1 SINE Alu -2 146 5 1 1194 668 206 92 0 chr11 79901773 79901904 -41941952 + B3A SINE B2 1 143 -55 1 1194 1070 53 82 22 chr11 79901916 79902041 -41941815 + B1_Mus1 SINE Alu 3 136 -12 1 1194 270 0 0 0 chr11 79902041 79902071 -41941785 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1194 710 171 13 52 chr11 79902197 79902351 -41941505 - B1_Mus1 SINE Alu 0 148 1 1 1194 195 114 0 0 chr11 79902370 79902405 -41941451 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1194 298 202 214 0 chr11 79902424 79902508 -41941348 - B1_Mur1 SINE Alu -14 135 34 1 1194 824 52 270 0 chr11 79902557 79902672 -41941184 + B1_Mus1 SINE Alu 2 147 -1 1 1194 230 337 21 11 chr11 79904167 79904260 -41939596 - PB1D10 SINE Alu -23 94 1 1 1194 1485 39 83 0 chr11 79904268 79904448 -41939408 - B2_Mm2 SINE B2 0 195 1 1 1194 21 0 0 0 chr11 79904451 79904472 -41939384 + AT_rich Low_complexity Low_complexity 1 21 0 1 1194 243 255 0 78 chr11 79904767 79904818 -41939038 - RSINE1 SINE B4 -17 148 102 1 1194 506 208 59 0 chr11 79904813 79904914 -41938942 + B1_Mus1 SINE Alu 40 146 -2 1 1194 219 36 0 0 chr11 79904914 79904942 -41938914 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1194 312 106 0 0 chr11 79904957 79905004 -41938852 - ORR1C2 LTR MaLR -336 48 2 1 1194 330 312 47 21 chr11 79905081 79905187 -41938669 - B1F SINE Alu -6 114 2 1 1194 625 284 72 22 chr11 79905684 79905864 -41937992 - ID_B1 SINE B4 -23 201 13 1 1194 342 0 0 0 chr11 79906347 79906385 -41937471 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1194 1332 44 0 0 chr11 79906385 79906545 -41937311 - B2_Mm1t SINE B2 -33 160 1 1 1194 795 167 24 0 chr11 79906578 79906704 -41937152 + B1_Mur2 SINE Alu 14 142 -7 1 1194 209 108 27 0 chr11 79906709 79906746 -41937110 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1194 663 175 44 0 chr11 79906806 79906920 -41936936 - B1_Mur1 SINE Alu 0 149 31 1 1194 771 193 27 27 chr11 79906941 79907090 -41936766 - B1_Mur4 SINE Alu 0 150 2 1 1194 270 0 0 0 chr11 79907110 79907140 -41936716 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1194 671 321 130 16 chr11 79907243 79907496 -41936360 + B4A SINE B4 8 289 -3 1 1194 354 281 31 69 chr11 79909731 79909861 -41933995 - PB1 SINE Alu -2 125 1 1 1194 466 296 9 0 chr11 79909862 79909977 -41933879 - B1F SINE Alu -5 144 29 1 1194 1021 66 0 0 chr11 79910008 79910145 -41933711 - B2_Mm2 SINE B2 -58 137 1 1 1194 278 213 206 13 chr11 79910145 79910229 -41933627 - PB1D10 SINE Alu -38 111 9 1 1194 684 236 21 0 chr11 79910392 79910536 -41933320 - B1_Mur3 SINE Alu -2 147 1 1 1194 241 250 24 24 chr11 79910712 79910794 -41933062 + CT-rich Low_complexity Low_complexity 3 84 0 1 1194 567 219 61 74 chr11 79910798 79910879 -41932977 - B1F2 SINE Alu -1 148 60 1 1194 1311 101 62 0 chr11 79910879 79911058 -41932798 - B2_Mm2 SINE B2 -4 191 2 1 1194 567 219 61 74 chr11 79911058 79911124 -41932732 - B1F2 SINE Alu -90 59 3 1 1194 315 253 107 0 chr11 79911236 79911311 -41932545 + ID4_ SINE ID 1 83 0 1 1194 258 170 0 19 chr11 79911678 79911732 -41932124 - B3 SINE B2 -163 53 1 1 1194 561 225 39 62 chr11 79911732 79911859 -41931997 - B1F2 SINE Alu -23 126 3 1 1194 2464 111 39 3 chr11 79912012 79912402 -41931454 - BGLII_Mus LTR ERVK 0 422 19 1 1194 1368 109 0 10 chr11 79912533 79912727 -41931129 - B2_Mm2 SINE B2 -3 192 1 1 1194 762 139 9 0 chr11 79912969 79913084 -41930772 - PB1D9 SINE Alu 0 120 5 1 1194 612 160 19 9 chr11 79913138 79913245 -41930611 - B1_Mur4 SINE Alu -2 148 41 1 1194 228 231 198 52 chr11 79913254 79913350 -41930506 - B4 SINE B4 -138 154 45 1 1194 1484 45 80 0 chr11 79913547 79913562 -41930294 - B2_Mm1a SINE B2 -3 190 176 1 1194 207 0 0 0 chr11 79913562 79913585 -41930271 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1194 1484 45 80 0 chr11 79913585 79913745 -41930111 - B2_Mm1a SINE B2 -18 175 3 1 1194 530 252 36 22 chr11 79914429 79914567 -41929289 + ID_B1 SINE B4 80 219 -5 1 1194 321 241 138 0 chr11 79914640 79914727 -41929129 - PB1D10 SINE Alu -7 110 12 1 1194 320 280 12 45 chr11 79914731 79914895 -41928961 - L1MB5 LINE L1 -114 6064 5905 1 1194 275 248 144 8 chr11 79915042 79915160 -41928696 + Tigger7 DNA MER2_type 444 577 -1914 1 1194 472 226 32 65 chr11 79915545 79915668 -41928188 - PB1D9 SINE Alu 0 120 2 1 1194 207 0 0 0 chr11 79915668 79915691 -41928165 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1194 586 200 18 0 chr11 79915729 79915839 -41928017 - B1_Mm SINE Alu 0 147 36 1 1194 592 246 37 7 chr11 79915838 79915973 -41927883 - ID_B1 SINE B4 -1 223 85 1 1194 223 275 9 149 chr11 79916164 79916271 -41927585 - RSINE1 SINE B4 -48 117 26 1 1194 1217 75 0 0 chr11 79916315 79916462 -41927394 + B1_Mus1 SINE Alu 2 148 0 1 1194 231 218 18 0 chr11 79916462 79916517 -41927339 + A-rich Low_complexity Low_complexity 5 60 0 1 1194 1204 56 0 7 chr11 79917148 79917293 -41926563 + B1_Mus1 SINE Alu 5 148 0 1 1194 228 205 0 0 chr11 79917315 79917354 -41926502 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 1 1194 267 317 80 77 chr11 79917354 79917391 -41926465 - B4A SINE B4 0 292 253 1 1194 183 80 0 0 chr11 79917391 79917416 -41926440 + (CG)n Simple_repeat Simple_repeat 2 26 0 1 1194 397 305 58 57 chr11 79917416 79917665 -41926191 - RSINE1 SINE B4 -40 252 5 1 1194 682 228 39 0 chr11 79917695 79917822 -41926034 - ID_B1 SINE B4 -10 214 83 1 1194 1442 68 0 6 chr11 79918277 79918454 -41925402 - B2_Mm2 SINE B2 -19 176 1 1 1194 524 151 93 19 chr11 79918460 79918568 -41925288 - PB1D9 SINE Alu 0 120 5 1 1194 790 155 139 0 chr11 79918598 79918727 -41925129 - B1_Mus1 SINE Alu -1 147 1 1 1194 31 58 0 0 chr11 79918749 79918801 -41925055 + AT_rich Low_complexity Low_complexity 1 52 0 1 1194 721 141 182 0 chr11 79918808 79918929 -41924927 - B1_Mus1 SINE Alu -5 143 1 1 1194 337 197 16 16 chr11 79919143 79919205 -41924651 - RSINE1 SINE B4 -97 68 7 1 1194 491 265 94 0 chr11 79919265 79919382 -41924474 - RSINE1 SINE B4 -33 132 5 1 1194 44 16 0 16 chr11 79919387 79919415 -41924441 + AT_rich Low_complexity Low_complexity 1 28 0 1 1194 626 255 20 7 chr11 79919415 79919561 -41924295 - B1_Mur3 SINE Alu -1 148 1 1 1194 44 16 0 16 chr11 79919561 79919594 -41924262 + AT_rich Low_complexity Low_complexity 1 33 0 1 1194 231 36 0 0 chr11 79919953 79919981 -41923875 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1194 345 211 38 38 chr11 79919981 79920051 -41923805 - B1_Mur1 SINE Alu -8 141 70 1 1194 306 305 92 23 chr11 79920055 79920186 -41923670 - B1F SINE Alu -9 140 1 1 1194 753 151 17 0 chr11 79920429 79920548 -41923308 + B3A SINE B2 2 122 -76 1 1194 452 256 104 32 chr11 79920636 79920761 -41923095 + B1F2 SINE Alu 11 144 -5 1 1194 297 75 0 0 chr11 79920761 79920801 -41923055 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 1 1194 1180 94 147 0 chr11 79920869 79921039 -41922817 + B2_Mm2 SINE B2 1 195 0 1 1194 440 165 176 0 chr11 79921044 79921129 -41922727 - B1_Mur3 SINE Alu -18 131 32 1 1194 378 248 47 9 chr11 79921384 79921490 -41922366 + B1F SINE Alu 38 147 -2 1 1194 249 229 0 20 chr11 79921850 79921899 -41921957 - ID4_ SINE ID 0 83 36 1 1194 830 132 108 0 chr11 79922252 79922381 -41921475 + B1_Mus2 SINE Alu 5 147 0 1 1194 423 0 0 0 chr11 79922420 79922467 -41921389 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1194 556 223 60 23 chr11 79922495 79922628 -41921228 - B3 SINE B2 -4 212 75 1 1194 197 83 0 27 chr11 79922637 79922674 -41921182 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1194 1219 55 14 0 chr11 79922679 79922824 -41921032 - B1_Mus1 SINE Alu 0 148 2 1 1194 797 275 118 10 chr11 79923832 79924027 -41919829 - ID_B1 SINE B4 -8 216 1 1 1194 1453 65 10 70 chr11 79924397 79924597 -41919259 - B2_Mm2 SINE B2 -7 188 1 1 1194 564 210 118 0 chr11 79924654 79924773 -41919083 - B1_Mur2 SINE Alu -1 148 16 1 1194 28 0 0 0 chr11 79925212 79925240 -41918616 + AT_rich Low_complexity Low_complexity 1 28 0 1 1194 197 65 32 0 chr11 79925260 79925291 -41918565 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 1 1194 369 0 0 0 chr11 79925292 79925333 -41918523 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 1194 753 161 0 74 chr11 79925335 79925483 -41918373 - B1_Mus1 SINE Alu -6 142 6 1 1194 286 206 57 130 chr11 79925373 79925496 -41918360 - B4A SINE B4 -98 194 81 1 1194 443 244 78 9 chr11 79925565 79925681 -41918175 + ID_B1 SINE B4 84 207 -17 1 1194 511 215 112 0 chr11 79925702 79925803 -41918053 - B1_Mur3 SINE Alu -1 148 36 1 1194 537 223 35 18 chr11 79925803 79925917 -41917939 + PB1D10 SINE Alu 2 117 0 1 1194 381 202 120 37 chr11 79925938 79926046 -41917810 + RSINE1 SINE B4 13 129 -36 1 1194 302 281 30 90 chr11 79926074 79926207 -41917649 - ID_B1 SINE B4 -98 126 2 1 1194 25 0 0 0 chr11 79926344 79926369 -41917487 + AT_rich Low_complexity Low_complexity 1 25 0 1 1194 401 333 129 21 chr11 79926866 79927059 -41916797 + B4A SINE B4 1 214 -78 1 1194 216 357 35 12 chr11 79927068 79927079 -41916777 - B4A SINE B4 -113 179 93 1 1194 276 246 135 14 chr11 79927079 79927153 -41916703 - B1F2 SINE Alu -59 90 8 1 1194 1468 94 16 0 chr11 79927187 79927378 -41916478 + B2_Mm2 SINE B2 2 195 0 1 1194 502 252 0 61 chr11 79927479 79927593 -41916263 + PB1D7 SINE Alu 7 113 -7 1 1194 337 293 127 57 chr11 79927920 79928235 -41915621 - L1MC5 LINE L1 -166 7795 7459 1 1194 854 9 9 0 chr11 79928269 79928376 -41915480 - L1Md_A LINE L1 0 6582 6475 1 1194 423 0 0 0 chr11 79928456 79928503 -41915353 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 1 1194 382 239 230 55 chr11 79928769 79929082 -41914774 - L1MEc LINE L1 -5219 1181 828 1 1194 640 254 21 78 chr11 79929082 79929274 -41914582 - B3A SINE B2 -15 183 3 1 1194 382 239 230 55 chr11 79929274 79929377 -41914479 - L1MEc LINE L1 -5573 827 692 1 1194 1345 27 0 0 chr11 79929496 79929643 -41914213 + B1_Mus2 SINE Alu 1 147 0 1 1194 803 196 41 20 chr11 79929668 79929814 -41914042 + B1_Mur1 SINE Alu 1 149 0 1 1194 521 289 67 54 chr11 79930018 79930241 -41913615 - L1MEc LINE L1 -6136 264 39 1 1194 462 270 25 34 chr11 79930464 79930583 -41913273 + PB1D7 SINE Alu 2 119 -1 1 1194 223 250 109 89 chr11 79930635 79930663 -41913193 + PB1D9 SINE Alu 5 107 -13 1 1194 364 247 0 0 chr11 79930663 79930736 -41913120 + ID_B1 SINE B4 139 211 -13 1 1194 779 246 53 48 chr11 79930889 79931077 -41912779 - B3 SINE B2 -27 189 1 1 1194 1164 63 28 0 chr11 79932020 79932163 -41911693 + B1_Mm SINE Alu 1 147 0 1 1194 634 239 8 0 chr11 79932809 79932926 -41910930 + PB1D9 SINE Alu 3 120 0 1 1194 527 107 12 0 chr11 79933172 79933256 -41910600 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 1194 1269 35 0 0 chr11 79933257 79933401 -41910455 - B1_Mus2 SINE Alu 0 147 4 1 1194 1090 239 10 14 chr11 79933519 79933727 -41910129 - B3 SINE B2 -7 209 3 1 1194 25 0 0 0 chr11 79933823 79933848 -41910008 + AT_rich Low_complexity Low_complexity 1 25 0 1 1194 808 175 66 0 chr11 79933902 79934039 -41909817 + B1_Mus1 SINE Alu 3 148 0 1 1194 243 316 63 44 chr11 79934369 79934528 -41909328 + RSINE1 SINE B4 4 165 0 1 1194 1163 191 28 32 chr11 79934568 79934785 -41909071 + B3 SINE B2 1 216 0 1 1194 573 309 15 0 chr11 79934831 79934967 -41908889 + B1F2 SINE Alu 1 138 -11 1 1194 263 226 0 0 chr11 79935211 79935264 -41908592 - B3 SINE B2 -163 53 1 1 1194 787 246 102 5 chr11 79935268 79935464 -41908392 - B3 SINE B2 0 216 2 1 1194 1031 139 7 20 chr11 79935488 79935635 -41908221 - B1_Mur3 SINE Alu 0 149 5 1 1194 192 99 69 14 chr11 79935859 79935931 -41907925 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 1194 228 214 36 0 chr11 79935945 79936001 -41907855 + 4.5SRNA scRNA scRNA 31 88 -6 1 1194 560 126 47 28 chr11 79935952 79936058 -41907798 + B1_Mur4 SINE Alu 41 148 -2 1 1194 204 143 0 0 chr11 79936107 79936149 -41907707 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1194 23 33 0 0 chr11 79936492 79936522 -41907334 + AT_rich Low_complexity Low_complexity 1 30 0 1 1194 787 226 0 0 chr11 79936555 79936688 -41907168 - RSINE1 SINE B4 -21 144 12 1 1194 368 232 162 0 chr11 79936718 79936817 -41907039 + PB1D10 SINE Alu 3 117 0 1 1194 324 306 83 83 chr11 79937075 79937232 -41906624 - Tigger7 DNA MER2_type -5 2486 2330 1 1194 300 235 44 0 chr11 79937252 79937320 -41906536 + B3A SINE B2 5 75 -123 1 1194 427 340 57 0 chr11 79937315 79937456 -41906400 - B3A SINE B2 -49 149 1 1 1194 930 147 271 0 chr11 79937739 79937909 -41905947 - B3 SINE B2 0 216 1 1 1194 1100 76 0 0 chr11 79938089 79938220 -41905636 - B1_Mus2 SINE Alu -15 132 2 1 1194 230 0 0 32 chr11 79938234 79938265 -41905591 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 1 1194 1397 36 0 0 chr11 79938265 79938431 -41905425 - B2_Mm1t SINE B2 -26 167 2 1 1194 408 274 91 56 chr11 79938462 79938694 -41905162 - L1M5 LINE L1 -1379 4767 4528 1 1194 219 36 0 0 chr11 79938702 79938730 -41905126 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1194 1210 55 14 0 chr11 79938739 79938884 -41904972 - B1_Mus2 SINE Alu 0 147 1 1 1194 235 254 72 29 chr11 79938885 79938954 -41904902 - L1M5 LINE L1 -1990 4156 4085 1 1194 255 167 0 0 chr11 79939021 79939087 -41904769 + (TTG)n Simple_repeat Simple_repeat 3 68 0 1 1194 261 313 101 51 chr11 79939316 79939342 -41904514 + ID_B1 SINE B4 74 218 -6 1 1194 355 291 134 18 chr11 79939342 79939454 -41904402 + B1F SINE Alu 19 143 -6 1 1194 822 65 122 0 chr11 79939455 79939578 -41904278 + B1_Mus2 SINE Alu 9 146 -1 1 1194 581 257 62 41 chr11 79939806 79939952 -41903904 + B1_Mur3 SINE Alu 1 149 0 1 1194 384 213 108 15 chr11 79940067 79940175 -41903681 + PB1D10 SINE Alu 12 128 -20 1 1194 378 201 22 64 chr11 79940182 79940272 -41903584 + B1F SINE Alu 6 92 -57 1 1194 23 0 0 0 chr11 79940368 79940391 -41903465 + AT_rich Low_complexity Low_complexity 1 23 0 1 1194 1720 21 0 20 chr11 79940392 79940588 -41903268 - B2_Mm1t SINE B2 0 193 2 1 1194 864 134 75 0 chr11 79941092 79941226 -41902630 - B1_Mus1 SINE Alu 0 148 5 1 1194 476 228 25 58 chr11 79941276 79941397 -41902459 + PB1D10 SINE Alu 1 117 0 1 1194 400 232 12 0 chr11 79941589 79941671 -41902185 + ID_B1 SINE B4 106 188 -36 1 1194 514 212 269 88 chr11 79941678 79941701 -41902155 + B3 SINE B2 1 21 -195 1 1194 1346 73 85 0 chr11 79941701 79941719 -41902137 - B2_Mm1t SINE B2 0 193 176 1 1194 423 0 0 0 chr11 79941719 79941766 -41902090 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1194 1346 73 85 0 chr11 79941766 79941924 -41901932 - B2_Mm1t SINE B2 -18 175 3 1 1194 514 212 269 88 chr11 79941924 79942071 -41901785 + B3 SINE B2 22 202 -14 1 1194 348 111 0 0 chr11 79942072 79942126 -41901730 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 1 1194 192 113 31 31 chr11 79942447 79942511 -41901345 + T-rich Low_complexity Low_complexity 3 66 0 1 1194 548 189 95 0 chr11 79942561 79942656 -41901200 - PB1D9 SINE Alu -13 107 4 1 1194 595 274 40 0 chr11 79942704 79942828 -41901028 - RSINE1 SINE B4 -35 130 2 1 1194 1345 90 23 0 chr11 79942846 79943023 -41900833 - B2_Mm2 SINE B2 -14 181 1 1 1194 712 95 133 0 chr11 79943146 79943251 -41900605 + PB1D9 SINE Alu 2 120 0 1 1194 204 40 0 0 chr11 79943251 79943276 -41900580 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1194 661 188 396 0 chr11 79943630 79943784 -41900072 - B3 SINE B2 0 216 2 1 1194 1122 117 18 0 chr11 79943816 79943987 -41899869 + B2_Mm2 SINE B2 2 175 -20 1 1194 1689 21 5 0 chr11 79944149 79944340 -41899516 - B2_Mm1t SINE B2 0 193 2 1 1194 454 200 0 0 chr11 79944398 79944478 -41899378 + ID_B1 SINE B4 143 222 -2 1 1194 1309 62 85 0 chr11 79945005 79945182 -41898674 - B2_Mm1t SINE B2 -1 192 1 1 1194 454 142 319 0 chr11 79945288 79945401 -41898455 + B1_Mur3 SINE Alu 1 149 0 1 1194 415 243 49 42 chr11 79945695 79945837 -41898019 + RSINE1 SINE B4 2 144 -21 1 1194 189 0 0 0 chr11 79945841 79945862 -41897994 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1194 697 171 31 8 chr11 79946982 79947112 -41896744 + B1_Mur3 SINE Alu 5 137 -12 1 1194 350 216 245 0 chr11 79947303 79947405 -41896451 + B1F SINE Alu 1 127 -22 1 1194 253 333 0 0 chr11 79948757 79948838 -41895018 - ID4 SINE ID -1 82 2 1 1194 277 309 79 35 chr11 79948841 79948955 -41894901 - PB1 SINE Alu -7 120 2 1 1194 915 82 28 56 chr11 79949334 79949476 -41894380 - B1_Mur4 SINE Alu -1 149 12 1 1194 410 184 23 168 chr11 79949365 79949496 -41894360 - MT2B LTR ERVL -337 264 153 1 1194 773 207 19 48 chr11 79949508 79949716 -41894140 - B3 SINE B2 -10 206 5 1 1194 373 165 72 0 chr11 79949716 79949813 -41894043 - L1Md_F2 LINE L1 0 6582 6479 1 1194 449 282 76 16 chr11 79949914 79950098 -41893758 - B3A SINE B2 -1 197 3 1 1194 1183 93 17 34 chr11 79951049 79951227 -41892629 + B2_Mm2 SINE B2 2 176 -19 1 1194 270 214 0 18 chr11 79951730 79951787 -41892069 + RSINE1 SINE B4 74 129 -36 1 1194 1210 56 0 0 chr11 79951841 79951985 -41891871 + B1_Mus2 SINE Alu 4 147 0 1 1194 844 156 14 47 chr11 79952024 79952172 -41891684 + B1_Mur4 SINE Alu 6 148 -2 1 1194 477 274 40 8 chr11 79952273 79952398 -41891458 + RSINE1 SINE B4 2 130 -35 1 1194 206 237 17 17 chr11 79952600 79952660 -41891196 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1194 241 177 31 62 chr11 79952684 79952763 -41891093 + PB1 SINE Alu 67 149 0 1 1194 226 259 0 0 chr11 79952797 79952851 -41891005 + B1_Mur4 SINE Alu 1 54 -96 1 1194 306 266 118 112 chr11 79953105 79953266 -41890590 + RSINE1 SINE B4 3 164 -1 1 1195 862 158 7 20 chr11 79953945 79954094 -41889762 + B1_Mus2 SINE Alu 1 147 0 1 1195 198 0 0 0 chr11 79954152 79954174 -41889682 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1 1195 365 295 32 0 chr11 79954220 79954315 -41889541 - B1_Mur2 SINE Alu -1 148 51 1 1195 215 250 27 93 chr11 79954282 79954357 -41889499 + B1F1 SINE Alu 74 143 -6 1 1195 219 298 44 67 chr11 79954395 79954485 -41889371 + PB1D9 SINE Alu 27 114 -6 1 1195 1084 115 0 0 chr11 79954557 79954705 -41889151 + B1_Mus1 SINE Alu 1 148 0 1 1195 385 189 27 13 chr11 79954718 79954793 -41889063 + B1_Mur1 SINE Alu 31 106 -43 1 1195 287 208 115 77 chr11 79954793 79954822 -41889034 + B4 SINE B4 116 223 -69 1 1195 22 0 0 0 chr11 79954894 79954916 -41888940 + AT_rich Low_complexity Low_complexity 1 22 0 1 1195 485 254 114 0 chr11 79955070 79955184 -41888672 + ID_B1 SINE B4 85 211 -13 1 1195 663 228 195 17 chr11 79956223 79956390 -41887466 - RMER17C LTR ERVK 0 410 202 1 1195 306 0 0 0 chr11 79956390 79956424 -41887432 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1195 663 228 195 17 chr11 79956424 79956604 -41887252 - RMER17C LTR ERVK -209 201 1 1 1195 535 238 79 0 chr11 79956701 79956827 -41887029 + B1F SINE Alu 6 141 -8 1 1195 1130 193 5 10 chr11 79956853 79957052 -41886804 + B3 SINE B2 15 212 -4 1 1195 1263 44 0 12 chr11 79957085 79957245 -41886611 + B2_Mm2 SINE B2 1 158 -37 1 1195 180 0 0 0 chr11 79957246 79957266 -41886590 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1195 258 32 0 0 chr11 79957269 79957300 -41886556 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1195 335 155 5 18 chr11 79957326 79957391 -41886465 + B1F SINE Alu 63 149 0 1 1195 1174 61 0 13 chr11 79957506 79957655 -41886201 - B1_Mus2 SINE Alu 0 147 1 1 1195 495 255 65 112 chr11 79957700 79957960 -41885896 - MLT1B LTR MaLR -30 360 113 1 1195 403 284 0 0 chr11 79957975 79958070 -41885786 - PB1 SINE Alu -7 120 26 1 1195 286 333 62 112 chr11 79957995 79958174 -41885682 - ID_B1 SINE B4 -54 170 1 1 1195 454 266 18 0 chr11 79958178 79958287 -41885569 - MLT1B LTR MaLR -349 118 8 1 1195 1396 87 16 0 chr11 79958381 79958566 -41885290 + B2_Mm2 SINE B2 1 188 -7 1 1195 424 188 94 129 chr11 79958568 79958770 -41885086 - B3A SINE B2 0 198 4 1 1195 255 316 36 103 chr11 79958777 79958804 -41885052 - B2_Mm2 SINE B2 -12 183 3 1 1195 610 287 12 42 chr11 79958804 79958971 -41884885 - RSINE1 SINE B4 0 165 4 1 1195 904 162 0 45 chr11 79958992 79959147 -41884709 + B1_Mur4 SINE Alu 3 150 0 1 1195 509 301 71 30 chr11 79959236 79959404 -41884452 + MLT1C LTR MaLR 186 437 -30 1 1195 263 286 49 16 chr11 79959509 79959613 -41884243 + MIRb SINE MIR 115 226 -42 1 1195 1285 92 16 16 chr11 79959883 79959912 -41883944 - B2_Mm1a SINE B2 -4 189 161 1 1195 189 0 0 0 chr11 79959912 79959933 -41883923 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1 1195 1285 92 16 16 chr11 79959933 79960091 -41883765 - B2_Mm1a SINE B2 -33 160 2 1 1195 344 324 19 29 chr11 79960119 79960224 -41883632 + PB1D10 SINE Alu 1 104 -13 1 1195 277 293 0 0 chr11 79960230 79960288 -41883568 + ID4 SINE ID 23 80 -3 1 1195 461 306 88 20 chr11 79960346 79960493 -41883363 + RSINE1 SINE B4 1 157 -8 1 1195 851 144 7 27 chr11 79960569 79960719 -41883137 - B1_Mus1 SINE Alu 0 148 2 1 1195 227 229 0 20 chr11 79960835 79960884 -41882972 - B2_Mm2 SINE B2 -146 49 2 1 1195 1088 89 0 14 chr11 79960918 79961066 -41882790 + B1_Mus1 SINE Alu 2 147 -1 1 1195 786 108 98 31 chr11 79961102 79961254 -41882602 + B2_Mm2 SINE B2 1 171 -45 1 1195 219 368 33 53 chr11 79961367 79961519 -41882337 + MIR SINE MIR 71 226 -42 1 1195 1641 31 0 10 chr11 79961661 79961855 -41882001 + B2_Mm1a SINE B2 2 193 0 1 1195 198 0 0 0 chr11 79961855 79961877 -41881979 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1195 966 130 0 0 chr11 79962228 79962382 -41881474 + (TCC)n Simple_repeat Simple_repeat 2 155 0 1 1195 378 0 0 0 chr11 79962488 79962530 -41881326 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1195 873 172 28 0 chr11 79962558 79962703 -41881153 - B1_Mur3 SINE Alu 0 149 1 1 1195 1669 21 21 0 chr11 79962711 79962900 -41880956 - B2_Mm1t SINE B2 0 193 1 1 1195 22 35 0 0 chr11 79962900 79962929 -41880927 + AT_rich Low_complexity Low_complexity 1 29 0 1 1195 487 265 56 72 chr11 79963648 79963843 -41880013 + B3A SINE B2 1 192 -6 1 1195 207 0 0 0 chr11 79963860 79963883 -41879973 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 1 1195 1243 47 14 0 chr11 79963883 79964031 -41879825 - B1_Mur4 SINE Alu 0 150 1 1 1195 254 194 15 0 chr11 79964086 79964153 -41879703 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1195 406 204 64 11 chr11 79964164 79964258 -41879598 - B3A SINE B2 -99 99 1 1 1195 237 239 110 27 chr11 79964264 79964337 -41879519 - B1F SINE Alu -4 145 67 1 1195 1714 21 0 0 chr11 79964344 79964537 -41879319 - B2_Mm1a SINE B2 0 193 1 1 1195 816 104 0 0 chr11 79964800 79964934 -41878922 + (TG)n Simple_repeat Simple_repeat 2 135 0 1 1195 412 252 95 9 chr11 79964959 79965075 -41878781 - B3 SINE B2 0 216 91 1 1195 372 59 0 0 chr11 79965075 79965126 -41878730 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1195 279 0 0 0 chr11 79966420 79966451 -41877405 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1195 279 0 0 0 chr11 79966451 79966481 -41877375 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1195 345 317 58 53 chr11 79967110 79967300 -41876556 - RMER15 LTR ERVL -109 466 276 1 1195 271 291 36 0 chr11 79968681 79968765 -41875091 - MIR SINE MIR -105 163 74 1 1195 600 14 0 0 chr11 79968780 79968849 -41875007 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1195 798 209 64 0 chr11 79968852 79969024 -41874832 - B3 SINE B2 -32 184 2 1 1195 197 319 49 49 chr11 79969393 79969535 -41874321 - L2c LINE L2 -3 3384 3243 1 1195 262 218 78 0 chr11 79969938 79970010 -41873846 + MIRc SINE MIR 78 157 -111 1 1195 351 0 0 0 chr11 79970193 79970232 -41873624 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1195 498 219 86 39 chr11 79970232 79970360 -41873496 - B1_Mur3 SINE Alu -14 135 2 1 1195 243 312 39 125 chr11 79970674 79970802 -41873054 + PB1D10 SINE Alu 1 117 0 1 1195 183 325 59 24 chr11 79970811 79970896 -41872960 - MIRb SINE MIR -15 253 166 1 1195 319 232 14 0 chr11 79971852 79971921 -41871935 - ID4 SINE ID -10 73 4 1 1195 384 243 8 105 chr11 79972057 79972181 -41871675 + PB1D10 SINE Alu 3 114 -3 1 1195 598 306 12 36 chr11 79972189 79972355 -41871501 + RSINE1 SINE B4 4 165 0 1 1195 25 31 0 0 chr11 79972356 79972388 -41871468 + AT_rich Low_complexity Low_complexity 1 32 0 1 1195 400 198 112 9 chr11 79972865 79972972 -41870884 + PB1D9 SINE Alu 1 118 -2 1 1195 595 262 0 102 chr11 79973055 79973212 -41870644 + ID_B1 SINE B4 78 218 -6 1 1195 378 307 68 50 chr11 79973393 79973554 -41870302 + MER20 DNA MER1_type 56 219 0 1 1195 441 66 0 0 chr11 79973759 79973820 -41870036 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1 1195 665 242 73 24 chr11 79973820 79973979 -41869877 - B3 SINE B2 -47 169 2 1 1195 230 0 33 0 chr11 79974024 79974054 -41869802 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1195 1114 80 0 0 chr11 79974054 79974191 -41869665 - B1_Mus1 SINE Alu -7 141 5 1 1195 1454 48 37 5 chr11 79974277 79974464 -41869392 - B2_Mm2 SINE B2 -1 194 2 1 1195 390 42 0 0 chr11 79974517 79974565 -41869291 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1 1195 584 237 42 0 chr11 79974565 79974683 -41869173 - B1_Mur1 SINE Alu -20 129 7 1 1195 849 234 41 46 chr11 79974693 79974912 -41868944 - ID_B1 SINE B4 -5 219 2 1 1195 262 274 12 23 chr11 79974964 79975050 -41868806 + CT-rich Low_complexity Low_complexity 3 87 0 1 1195 1069 215 5 5 chr11 79975065 79975275 -41868581 - B3 SINE B2 -3 213 4 1 1195 472 159 31 31 chr11 79975296 79975393 -41868463 - PB1D10 SINE Alu 0 117 21 1 1195 603 230 96 0 chr11 79975939 79976074 -41867782 - B1_Mur1 SINE Alu -1 148 1 1 1195 772 226 7 14 chr11 79976129 79976277 -41867579 + B1_Mur2 SINE Alu 2 148 -1 1 1195 240 328 16 0 chr11 79976375 79976436 -41867420 - ID4 SINE ID 0 83 22 1 1195 483 275 0 32 chr11 79976516 79976640 -41867216 + B1_Mur1 SINE Alu 7 126 -23 1 1195 261 113 60 11 chr11 79976633 79976684 -41867172 + PB1 SINE Alu 59 123 -4 1 1195 876 249 9 5 chr11 79976684 79976898 -41866958 + B3 SINE B2 2 216 0 1 1195 253 158 16 109 chr11 79976898 79976910 -41866946 + PB1D10 SINE Alu 108 116 -1 1 1195 335 271 0 40 chr11 79977586 79977686 -41866170 - PB1D10 SINE Alu -5 112 17 1 1195 201 147 0 0 chr11 79977698 79977732 -41866124 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 1 1195 310 205 35 82 chr11 79977826 79977893 -41865963 + PB1 SINE Alu 27 95 -32 1 1195 853 168 0 20 chr11 79977893 79978045 -41865811 + B1_Mur3 SINE Alu 1 149 0 1 1195 310 205 35 82 chr11 79978045 79978062 -41865794 + PB1 SINE Alu 96 107 -20 1 1195 841 230 49 20 chr11 79978202 79978406 -41865450 + B3 SINE B2 1 210 -6 1 1195 204 179 0 0 chr11 79978537 79978576 -41865280 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 1 1195 322 242 0 0 chr11 79978583 79978645 -41865211 + ID2 SINE ID 1 62 -21 1 1195 1295 104 0 35 chr11 79978668 79978867 -41864989 - B2_Mm1a SINE B2 0 193 2 1 1195 309 109 0 0 chr11 79979455 79979510 -41864346 + (CTG)n Simple_repeat Simple_repeat 3 57 0 1 1195 564 233 30 9 chr11 79979678 79979820 -41864036 + B1_Mus2 SINE Alu 3 149 0 1 1195 643 275 122 0 chr11 79979960 79980149 -41863707 + B3 SINE B2 5 216 0 1 1195 929 176 71 25 chr11 79980170 79980368 -41863488 - B3 SINE B2 -9 207 1 1 1195 186 189 54 0 chr11 79980389 79980426 -41863430 + MER5A DNA MER1_type 73 111 -78 1 1195 233 133 21 43 chr11 79980473 79980520 -41863336 - YREP_Mm Unknown Unknown -1512 300 255 1 1195 357 257 0 0 chr11 79980481 79980555 -41863301 + PB1D10 SINE Alu 24 97 -20 1 1195 241 333 0 22 chr11 79980555 79980570 -41863286 + ID_B1 SINE B4 105 191 -33 1 1195 180 0 0 0 chr11 79980856 79980876 -41862980 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1195 864 84 36 51 chr11 79980886 79981024 -41862832 - B1_Mm SINE Alu -10 137 2 1 1195 1544 53 5 0 chr11 79981200 79981390 -41862466 - B2_Mm1t SINE B2 -1 192 2 1 1195 236 53 26 0 chr11 79981454 79981492 -41862364 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1195 1235 48 0 0 chr11 79981507 79981654 -41862202 - B1_Mus2 SINE Alu 0 147 1 1 1195 366 167 282 26 chr11 79981673 79981790 -41862066 - B1_Mur1 SINE Alu -2 147 1 1 1195 430 261 8 87 chr11 79982028 79982154 -41861702 - B1F SINE Alu 0 117 2 1 1195 235 284 40 0 chr11 79982774 79982848 -41861008 + PB1D10 SINE Alu 6 82 -35 1 1195 640 178 107 15 chr11 79982877 79983008 -41860848 + B1_Mur4 SINE Alu 7 149 -1 1 1195 291 231 24 60 chr11 79983023 79983098 -41860758 + ID_B1 SINE B4 143 216 -8 1 1195 336 77 0 0 chr11 79983098 79983150 -41860706 + (CATA)n Simple_repeat Simple_repeat 2 53 0 1 1195 741 189 55 59 chr11 79983241 79983443 -41860413 + B3 SINE B2 4 204 -12 1 1195 600 27 0 0 chr11 79983473 79983547 -41860309 + (GGAA)n Simple_repeat Simple_repeat 2 75 0 1 1195 435 19 0 0 chr11 79984034 79984086 -41859770 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1195 349 287 106 29 chr11 79984724 79984908 -41858948 + MIR3 SINE MIR 4 199 -9 1 1195 662 206 0 0 chr11 79984953 79985079 -41858777 - B1_Mur1 SINE Alu -9 140 15 1 1195 306 0 0 0 chr11 79985079 79985113 -41858743 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1195 1025 258 52 19 chr11 79985128 79985397 -41858459 - B4 SINE B4 -4 288 11 1 1195 286 257 0 0 chr11 79985925 79985995 -41857861 + ID4 SINE ID 2 71 -12 1 1195 588 202 0 42 chr11 79986023 79986142 -41857714 + B1F SINE Alu 21 134 -15 1 1195 241 260 0 0 chr11 79987079 79987129 -41856727 + CT-rich Low_complexity Low_complexity 1 50 0 1 1195 477 0 0 0 chr11 79987130 79987183 -41856673 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1 1195 863 169 0 0 chr11 79987183 79987313 -41856543 - B1_Mus2 SINE Alu -14 133 4 1 1195 258 239 140 80 chr11 79988188 79988295 -41855561 + B1F SINE Alu 27 140 -9 1 1195 1047 127 0 7 chr11 79988471 79988622 -41855234 + B1_Mur4 SINE Alu 1 150 0 1 1195 303 175 0 0 chr11 79988625 79988682 -41855174 + GA-rich Low_complexity Low_complexity 2 58 0 1 1195 1123 67 0 43 chr11 79988682 79988870 -41854986 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1195 213 171 34 20 chr11 79989219 79989276 -41854580 + B1_Mur1 SINE Alu 57 147 -2 1 1195 256 316 32 107 chr11 79989848 79990064 -41853792 + MIR SINE MIR 13 212 -50 1 1195 399 304 22 7 chr11 79990065 79990204 -41853652 + B1F SINE Alu 1 141 -8 1 1195 423 0 0 0 chr11 79990205 79990252 -41853604 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1195 214 279 0 0 chr11 79990269 79990312 -41853544 + ID4_ SINE ID 28 70 -13 1 1195 225 0 0 0 chr11 79990922 79990947 -41852909 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1195 647 218 13 45 chr11 79991428 79991582 -41852274 + B1_Mur2 SINE Alu 1 149 0 1 1195 347 236 169 23 chr11 79992183 79992300 -41851556 + B1F SINE Alu 1 138 -11 1 1195 180 0 0 0 chr11 79992300 79992320 -41851536 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1195 347 236 169 23 chr11 79992320 79992332 -41851524 + B1F SINE Alu 139 149 0 1 1195 306 136 318 0 chr11 79992342 79992430 -41851426 + B1_Mus2 SINE Alu 32 147 0 1 1195 214 191 0 0 chr11 79992433 79992475 -41851381 + A-rich Low_complexity Low_complexity 2 43 0 1 1195 766 211 0 13 chr11 79992657 79992806 -41851050 + B1_Mur2 SINE Alu 2 148 -1 1 1195 500 269 82 0 chr11 79992851 79992985 -41850871 + ID_B1 SINE B4 80 224 0 1 1195 227 143 24 0 chr11 79993005 79993047 -41850809 + L1MC4 LINE L1 7613 7655 -227 1 1195 922 159 14 0 chr11 79993078 79993216 -41850640 + B1_Mur4 SINE Alu 6 145 -5 1 1195 372 274 43 110 chr11 79993083 79993224 -41850632 + B4A SINE B4 95 226 -66 1 1195 1111 100 32 53 chr11 79993224 79993414 -41850442 + B2_Mm2 SINE B2 2 187 -8 1 1195 372 274 43 110 chr11 79993414 79993436 -41850420 + B4A SINE B4 227 247 -45 1 1195 659 197 111 0 chr11 79993439 79993556 -41850300 + B3 SINE B2 1 130 -86 1 1195 250 228 206 30 chr11 79993592 79993723 -41850133 + L1MC4 LINE L1 7690 7843 -199 1 1195 1247 41 0 0 chr11 79993765 79993912 -41849944 - B1_Mus2 SINE Alu 0 147 1 1 1195 216 274 16 0 chr11 79993952 79994014 -41849842 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1 1195 291 294 92 0 chr11 79994181 79994290 -41849566 + PB1 SINE Alu 1 119 -8 1 1195 290 265 9 89 chr11 79994433 79994545 -41849311 + B4 SINE B4 79 181 -111 1 1195 664 178 0 8 chr11 79994452 79994571 -41849285 + B1_Mur3 SINE Alu 9 126 -23 1 1195 24 0 0 0 chr11 79994930 79994954 -41848902 + AT_rich Low_complexity Low_complexity 1 24 0 1 1195 978 142 41 6 chr11 79994962 79995132 -41848724 + B2_Mm2 SINE B2 2 177 -18 1 1195 318 50 0 0 chr11 79995424 79995464 -41848392 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1195 1272 81 0 0 chr11 79995516 79995690 -41848166 + (TTTCC)n Simple_repeat Simple_repeat 5 178 0 1 1195 421 97 14 14 chr11 79995691 79995764 -41848092 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 1 1195 831 174 14 7 chr11 79995764 79995909 -41847947 - B1_Mur3 SINE Alu 0 149 4 1 1195 440 174 33 0 chr11 79996088 79996180 -41847676 + URR1B DNA MER1_type 59 153 -72 1 1195 987 83 89 7 chr11 79996173 79996319 -41847537 - B2_Mm2 SINE B2 -5 190 33 1 1195 1433 75 21 0 chr11 79996321 79996507 -41847349 - B2_Mm2 SINE B2 -4 191 2 1 1195 201 121 0 0 chr11 79996518 79996551 -41847305 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1195 962 16 176 0 chr11 79996563 79996688 -41847168 - B1_Mm SINE Alu 0 147 1 1 1195 331 161 0 36 chr11 79996688 79996762 -41847094 - L1Md_A LINE L1 -8 6574 6502 1 1195 1493 58 27 0 chr11 79996811 79996999 -41846857 - B2_Mm1t SINE B2 0 193 1 1 1195 509 75 0 15 chr11 79997017 79997085 -41846771 - B2_Mm2 SINE B2 -28 167 101 1 1195 308 159 16 0 chr11 79997082 79997145 -41846711 - URR1A DNA MER1_type -78 148 85 1 1195 261 217 252 34 chr11 79998103 79998116 -41845740 - B4A SINE B4 -51 241 97 1 1195 391 226 57 38 chr11 79998116 79998222 -41845634 - PB1D7 SINE Alu -1 119 12 1 1195 359 270 0 0 chr11 79998221 79998295 -41845561 - B1_Mus1 SINE Alu -74 74 1 1 1195 344 313 39 26 chr11 79998296 79998450 -41845406 - L1MB4 LINE L1 -45 6135 5980 1 1195 447 300 37 32 chr11 79998809 79999048 -41844808 - L1MB7 LINE L1 -158 6022 5788 1 1195 2824 85 160 39 chr11 79999048 79999297 -41844559 - MURVY-LTR LTR ERV1 0 519 251 1 1195 333 0 0 0 chr11 79999297 79999334 -41844522 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1195 2824 85 160 39 chr11 79999334 79999547 -41844309 - MURVY-LTR LTR ERV1 -269 250 1 1 1195 447 291 34 17 chr11 79999547 79999640 -41844216 - L1MB7 LINE L1 -397 5787 5694 1 1195 1063 139 194 0 chr11 79999676 79999856 -41844000 + B3 SINE B2 1 215 -1 1 1195 990 63 32 0 chr11 79999874 80000000 -41843856 - B1_Mus1 SINE Alu 0 148 19 1 1195 1124 102 0 0 chr11 80000059 80000206 -41843650 + B1_Mus1 SINE Alu 2 148 0 1 1195 672 272 46 165 chr11 80000232 80000712 -41843144 - RLTR23 LTR ERV1 0 430 8 2 1195 8333 45 0 10 chr11 80000750 80001820 -41842036 - L1Md_F2 LINE L1 -1 6581 5521 3 1195 4041 71 0 0 chr11 80001812 80002334 -41841522 + L1_Mm LINE L1 2409 2930 -2953 4 1195 698 145 24 0 chr11 80002336 80002460 -41841396 + B1_Mur2 SINE Alu 23 149 0 5 1195 1095 52 167 6 chr11 80002890 80003046 -41840810 + B2_Mm2 SINE B2 1 181 -14 6 1195 203 276 80 11 chr11 80003227 80003315 -41840541 + L2 LINE L2 1960 2053 -1366 7 1195 1384 100 16 0 chr11 80003356 80003546 -41840310 + B2_Mm2 SINE B2 3 195 0 8 1195 847 229 28 32 chr11 80003550 80003767 -41840089 - B3 SINE B2 0 216 1 9 1195 544 255 19 32 chr11 80003834 80003992 -41839864 - RSINE1 SINE B4 0 165 10 1 1195 226 298 69 0 chr11 80004004 80004088 -41839768 - PB1D10 SINE Alu -2 125 33 1 1195 239 303 33 22 chr11 80004119 80004210 -41839646 - ID_B1 SINE B4 -3 221 130 1 1195 1356 168 20 15 chr11 80004218 80004510 -41839346 - RMER19A LTR ERVK 0 737 315 1 1195 1100 77 6 0 chr11 80004522 80004678 -41839178 - B2_Mm2 SINE B2 -37 158 2 1 1195 1105 75 0 33 chr11 80005435 80005586 -41838270 + B1_Mus1 SINE Alu 2 147 -1 1 1195 378 258 171 8 chr11 80006378 80006507 -41837349 + B4A SINE B4 142 291 -1 1 1195 881 164 0 7 chr11 80006669 80006810 -41837046 + B1_Mur3 SINE Alu 1 140 -9 1 1195 321 26 0 0 chr11 80006810 80006848 -41837008 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1195 378 256 35 0 chr11 80006858 80006944 -41836912 + B3 SINE B2 24 112 -104 1 1195 733 171 8 0 chr11 80006960 80007077 -41836779 + PB1D9 SINE Alu 3 120 0 2 1195 229 207 0 17 chr11 80007077 80007136 -41836720 + A-rich Low_complexity Low_complexity 4 61 0 2 1195 1217 55 0 0 chr11 80007167 80007313 -41836543 + B1_Mus2 SINE Alu 2 147 0 2 1195 2398 179 158 137 chr11 80007596 80008464 -41835392 - RMER19B LTR ERVK -13 889 4 2 1195 389 270 164 16 chr11 80008770 80008898 -41834958 - RSINE1 SINE B4 -17 148 2 2 1195 1043 202 0 37 chr11 80008920 80009136 -41834720 - B3 SINE B2 -8 208 1 2 1195 406 309 7 14 chr11 80009154 80009295 -41834561 + B4A SINE B4 140 279 -13 2 1195 186 369 43 43 chr11 80009517 80009633 -41834223 - L2c LINE L2 0 3387 3272 2 1195 2955 152 133 6 chr11 80009767 80010309 -41833547 + RMER19C LTR ERVK 1 611 0 2 1195 549 232 199 0 chr11 80010482 80010663 -41833193 + ID_B1 SINE B4 1 217 -7 2 1195 630 0 0 0 chr11 80010718 80010788 -41833068 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1195 649 161 136 0 chr11 80010795 80010913 -41832943 - B1_Mus1 SINE Alu -14 134 1 3 1195 747 0 0 0 chr11 80010936 80011019 -41832837 + (TTC)n Simple_repeat Simple_repeat 1 83 0 3 1195 910 254 24 0 chr11 80011816 80012021 -41831835 + B3 SINE B2 3 212 -4 3 1195 258 345 11 22 chr11 80012657 80012670 -41831186 + B4A SINE B4 76 87 -205 3 1195 527 299 0 0 chr11 80012670 80012797 -41831059 + B1_Mur1 SINE Alu 3 129 -20 3 1195 457 288 16 0 chr11 80012834 80012959 -41830897 + MER77 LTR ERVL 11 137 -470 3 1195 654 285 101 42 chr11 80012997 80013283 -41830573 + MER77 LTR ERVL 258 560 -47 3 1195 801 117 191 0 chr11 80013381 80013543 -41830313 + B2_Mm2 SINE B2 3 195 0 3 1195 583 60 0 67 chr11 80013635 80013725 -41830131 - B1_Mus1 SINE Alu -64 84 1 3 1195 1260 99 41 0 chr11 80013737 80013909 -41829947 - B2_Mm2 SINE B2 -15 180 2 3 1195 41 21 0 0 chr11 80013909 80013957 -41829899 + AT_rich Low_complexity Low_complexity 1 48 0 4 1195 1311 110 16 5 chr11 80013968 80014160 -41829696 - B2_Mm2 SINE B2 -1 194 1 4 1195 1372 120 35 9 chr11 80014166 80014393 -41829463 - L1_Mus3 LINE L1 0 6638 6406 4 1195 207 0 0 0 chr11 80014424 80014447 -41829409 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1195 1222 48 0 0 chr11 80014447 80014593 -41829263 - B1_Mus2 SINE Alu 0 147 2 4 1195 219 114 0 0 chr11 80014725 80014760 -41829096 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4 1195 393 200 108 20 chr11 80014840 80014942 -41828914 + B1_Mur3 SINE Alu 33 143 -6 4 1195 364 277 9 26 chr11 80015049 80015164 -41828692 + MER2B DNA MER2_type 197 309 -27 4 1195 180 0 0 0 chr11 80015377 80015397 -41828459 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1195 1398 171 8 116 chr11 80016012 80016382 -41827474 - RMER5 LTR ERV1 -10 524 195 4 1195 857 128 30 0 chr11 80016396 80016529 -41827327 - B1_Mus2 SINE Alu -6 141 5 5 1195 309 26 0 0 chr11 80016530 80016568 -41827288 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1195 1103 73 0 0 chr11 80016568 80016704 -41827152 - B1_Mm SINE Alu -10 137 2 5 1195 849 139 183 86 chr11 80016729 80016926 -41826930 - B3 SINE B2 0 216 1 5 1195 799 206 39 34 chr11 80016926 80016938 -41826918 - RMER5 LTR ERV1 -327 207 198 4 1195 207 0 0 0 chr11 80016938 80016961 -41826895 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1195 799 206 39 34 chr11 80016961 80017154 -41826702 - RMER5 LTR ERV1 -337 197 1 4 1195 464 272 26 9 chr11 80017335 80017461 -41826395 + B1F SINE Alu 14 141 -8 5 1195 580 136 20 27 chr11 80017827 80017963 -41825893 + B1_Mur2 SINE Alu 7 147 -2 5 1195 1144 82 0 0 chr11 80018091 80018237 -41825619 - B1_Mus2 SINE Alu 0 147 2 5 1195 840 62 99 15 chr11 80018256 80018387 -41825469 - B1_Mm SINE Alu 0 147 6 5 1195 324 263 0 78 chr11 80018452 80018580 -41825276 - MIR SINE MIR -139 123 6 5 1195 1107 135 11 11 chr11 80018829 80019009 -41824847 + B2_Mm2 SINE B2 2 181 -14 6 1195 414 155 94 12 chr11 80019104 80019189 -41824667 - PB1D10 SINE Alu -2 115 24 6 1195 399 41 0 0 chr11 80019207 80019256 -41824600 + (TTTTA)n Simple_repeat Simple_repeat 5 53 0 6 1195 824 237 24 0 chr11 80019271 80019440 -41824416 - B3 SINE B2 -42 174 2 6 1195 751 242 86 29 chr11 80019810 80020053 -41823803 + B4A SINE B4 1 257 -35 6 1195 713 183 8 0 chr11 80020141 80020272 -41823584 - B1_Mur3 SINE Alu 0 149 18 6 1195 507 219 99 23 chr11 80020374 80020422 -41823434 - B1_Mur1 SINE Alu -8 141 93 6 1195 1047 152 20 30 chr11 80020422 80020619 -41823237 - B2_Mm2 SINE B2 0 195 1 6 1195 507 219 99 23 chr11 80020619 80020701 -41823155 - B1_Mur1 SINE Alu -57 92 2 6 1195 385 272 97 0 chr11 80021194 80021297 -41822559 - PB1D7 SINE Alu -2 118 6 6 1195 1128 70 14 0 chr11 80021366 80021509 -41822347 - B1_Mus1 SINE Alu -1 147 3 6 1195 547 229 0 0 chr11 80021600 80021705 -41822151 - B1F SINE Alu -44 105 1 7 1195 982 71 0 0 chr11 80021723 80021863 -41821993 - B1_Mus2 SINE Alu 0 147 8 7 1195 312 298 26 173 chr11 80021911 80022102 -41821754 + RSINE1 SINE B4 3 165 0 7 1195 202 208 0 20 chr11 80022516 80022565 -41821291 + C-rich Low_complexity Low_complexity 1 48 0 7 1195 204 118 0 29 chr11 80022520 80022555 -41821301 + (CCG)n Simple_repeat Simple_repeat 2 35 0 7 1195 180 0 0 0 chr11 80023197 80023217 -41820639 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1195 302 260 68 0 chr11 80023274 80023347 -41820509 + ID4_ SINE ID 6 83 0 7 1195 29 28 0 0 chr11 80023369 80023405 -41820451 + AT_rich Low_complexity Low_complexity 1 36 0 7 1195 326 231 13 13 chr11 80023929 80024008 -41819848 - B3A SINE B2 -47 151 73 7 1195 544 131 197 0 chr11 80024454 80024576 -41819280 + B1_Mus2 SINE Alu 2 147 0 7 1195 227 201 19 19 chr11 80024838 80024897 -41818959 + B1F1 SINE Alu 9 67 -50 8 1195 240 315 27 14 chr11 80024910 80024984 -41818872 + ID4 SINE ID 2 76 -7 8 1195 1105 84 0 20 chr11 80025051 80025197 -41818659 + B1_Mus2 SINE Alu 1 143 -4 8 1195 408 255 106 0 chr11 80025339 80025480 -41818376 - ID_B1 SINE B4 -67 157 2 8 1195 731 117 37 59 chr11 80025603 80025739 -41818117 - B1_Mus1 SINE Alu -6 142 10 8 1195 356 157 62 97 chr11 80025640 80025753 -41818103 - MT2B LTR ERVL -337 264 156 8 1195 559 248 32 0 chr11 80025768 80025925 -41817931 - RSINE1 SINE B4 -1 164 3 8 1195 487 276 8 45 chr11 80025995 80026128 -41817728 + B1F SINE Alu 14 141 -8 8 1195 1273 112 21 0 chr11 80026278 80026466 -41817390 - B2_Mm2 SINE B2 -2 193 2 8 1195 687 163 15 30 chr11 80027026 80027159 -41816697 + B1_Mur3 SINE Alu 19 149 0 8 1195 794 168 0 0 chr11 80027312 80027443 -41816413 - B1_Mur4 SINE Alu -6 144 14 9 1195 468 234 0 11 chr11 80027541 80027636 -41816220 + B4A SINE B4 3 96 -196 9 1195 1087 89 6 0 chr11 80027638 80027795 -41816061 + B2_Mm2 SINE B2 4 161 -34 9 1195 180 0 0 0 chr11 80027796 80027816 -41816040 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1195 979 217 25 0 chr11 80027834 80028032 -41815824 + B3 SINE B2 2 204 -12 9 1195 207 0 0 0 chr11 80028037 80028060 -41815796 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9 1195 762 168 38 0 chr11 80028067 80028198 -41815658 + B1_Mur2 SINE Alu 1 136 -13 9 1195 552 339 11 5 chr11 80028218 80028408 -41815448 + B4A SINE B4 84 274 -18 9 1195 288 0 0 0 chr11 80028608 80028640 -41815216 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1195 30 0 0 0 chr11 80028640 80028670 -41815186 + AT_rich Low_complexity Low_complexity 1 30 0 9 1195 456 227 163 8 chr11 80028676 80028805 -41815051 + B1F SINE Alu 1 149 0 1 1195 620 204 27 68 chr11 80028907 80029054 -41814802 + RSINE1 SINE B4 24 164 -1 1 1195 255 242 9 120 chr11 80029161 80029269 -41814587 - MT2B LTR ERVL -327 274 179 1 1195 533 193 0 0 chr11 80029182 80029270 -41814586 - B1_Mur2 SINE Alu -48 101 14 1 1195 1142 51 0 0 chr11 80029273 80029410 -41814446 + B1_Mus2 SINE Alu 1 137 -10 1 1195 340 19 38 19 chr11 80029410 80029463 -41814393 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1195 246 210 32 16 chr11 80029562 80029625 -41814231 - PB1D7 SINE Alu -14 106 43 1 1195 221 0 0 33 chr11 80029754 80029784 -41814072 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1195 821 197 0 0 chr11 80029784 80029921 -41813935 - B1_Mus2 SINE Alu -10 137 1 1 1195 350 269 28 46 chr11 80030445 80030554 -41813302 - MER21B LTR ERV1 -624 239 133 1 1195 323 170 19 0 chr11 80030926 80030979 -41812877 - B1_Mus2 SINE Alu -88 59 6 1 1195 279 0 0 0 chr11 80030990 80031021 -41812835 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1195 1010 82 22 0 chr11 80031021 80031156 -41812700 - B1_Mus1 SINE Alu -10 138 1 1 1195 22 35 0 0 chr11 80031160 80031189 -41812667 + AT_rich Low_complexity Low_complexity 1 29 0 1 1195 493 269 113 0 chr11 80031191 80031332 -41812524 - RSINE1 SINE B4 -4 161 5 1 1195 1063 202 9 28 chr11 80031448 80031662 -41812194 + B3 SINE B2 1 210 -6 1 1195 1487 44 39 0 chr11 80031981 80032161 -41811695 + B2_Mm1a SINE B2 1 187 -6 1 1195 315 191 0 0 chr11 80032893 80032956 -41810900 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1195 463 309 65 13 chr11 80034032 80034186 -41809670 - RSINE1 SINE B4 0 165 4 1 1195 824 85 23 0 chr11 80034293 80034422 -41809434 + B2_Mm2 SINE B2 63 194 -1 1 1195 762 204 13 26 chr11 80034487 80034643 -41809213 - ID_B1 SINE B4 -8 216 63 1 1195 387 248 124 33 chr11 80034989 80035110 -41808746 - B1F2 SINE Alu 0 149 18 1 1195 369 298 64 29 chr11 80035153 80035326 -41808530 + B3A SINE B2 1 179 -19 1 1195 246 254 15 45 chr11 80035473 80035539 -41808317 - ID4_ SINE ID -1 82 19 1 1195 517 293 73 0 chr11 80035733 80035883 -41807973 + RSINE1 SINE B4 3 163 -2 1 1195 215 239 0 0 chr11 80035899 80035945 -41807911 + B1F1 SINE Alu 90 135 -14 1 1195 1166 174 24 19 chr11 80036057 80036262 -41807594 + B3 SINE B2 1 206 -10 1 1195 279 284 16 0 chr11 80036426 80036526 -41807330 - BC1_Mm scRNA scRNA -42 110 9 1 1195 414 0 0 0 chr11 80036805 80036851 -41807005 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1195 1068 65 14 0 chr11 80036853 80036991 -41806865 - B1_Mm SINE Alu -7 140 1 1 1195 443 304 109 0 chr11 80037061 80037199 -41806657 - RSINE1 SINE B4 -10 155 3 1 1195 566 242 49 12 chr11 80037564 80037727 -41806129 + B3A SINE B2 20 188 -10 1 1195 342 290 130 46 chr11 80037910 80038142 -41805714 + B4 SINE B4 2 257 -35 1 1195 255 103 0 0 chr11 80038234 80038273 -41805583 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1195 451 272 74 7 chr11 80038275 80038423 -41805433 - RSINE1 SINE B4 -5 160 3 1 1195 228 86 0 0 chr11 80038829 80038864 -41804992 + (TATG)n Simple_repeat Simple_repeat 3 37 0 1 1195 482 206 37 9 chr11 80038872 80038980 -41804876 - B3 SINE B2 -54 162 52 1 1195 298 279 135 0 chr11 80039262 80039366 -41804490 - ID_B1 SINE B4 -26 198 81 1 1195 309 207 193 12 chr11 80039674 80039757 -41804099 - B1F SINE Alu -5 144 47 1 1195 774 193 0 51 chr11 80039780 80039799 -41804057 - B1_Mur4 SINE Alu 0 150 138 1 1195 207 0 0 0 chr11 80039799 80039822 -41804034 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1195 774 193 0 51 chr11 80039822 80039960 -41803896 - B1_Mur4 SINE Alu -13 137 1 1 1195 329 286 71 0 chr11 80040171 80040269 -41803587 + B3 SINE B2 104 208 -8 1 1195 216 0 0 0 chr11 80040269 80040293 -41803563 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1 1195 1135 82 0 7 chr11 80040298 80040445 -41803411 - B1_Mus1 SINE Alu -1 147 2 1 1195 21 0 0 0 chr11 80040445 80040466 -41803390 + AT_rich Low_complexity Low_complexity 1 21 0 1 1195 294 179 0 0 chr11 80040474 80040530 -41803326 + T-rich Low_complexity Low_complexity 1 56 0 1 1195 192 152 0 0 chr11 80040553 80040586 -41803270 + T-rich Low_complexity Low_complexity 1 33 0 1 1195 647 191 14 51 chr11 80040588 80040726 -41803130 - B1_Mur1 SINE Alu 0 149 17 1 1195 189 0 0 0 chr11 80040952 80040973 -41802883 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1195 180 0 0 0 chr11 80040973 80040992 -41802864 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1195 402 134 0 0 chr11 80040992 80041059 -41802797 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1195 390 74 0 0 chr11 80041059 80041113 -41802743 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1195 551 165 305 18 chr11 80041136 80041303 -41802553 + B3 SINE B2 2 216 0 1 1195 606 147 112 37 chr11 80041314 80041448 -41802408 + B1_Mur4 SINE Alu 6 149 -1 1 1195 234 265 62 100 chr11 80041866 80041996 -41801860 + MIRc SINE MIR 105 229 -39 1 1195 480 224 0 9 chr11 80042202 80042310 -41801546 - PB1D9 SINE Alu 0 120 14 1 1195 406 221 81 0 chr11 80042371 80042457 -41801399 - B1_Mur3 SINE Alu -55 94 2 1 1195 779 210 106 20 chr11 80042495 80042694 -41801162 - B3 SINE B2 0 216 1 1 1195 784 68 42 0 chr11 80042728 80042846 -41801010 - B2_Mm1t SINE B2 0 193 71 1 1195 373 244 68 15 chr11 80042985 80043118 -41800738 - MER3 DNA MER1_type -4 205 66 1 1195 269 26 26 0 chr11 80043459 80043497 -41800359 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 1 1195 229 280 25 160 chr11 80043501 80043620 -41800236 - PB1D10 SINE Alu -12 105 3 1 1195 404 18 0 52 chr11 80043802 80043840 -41800016 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1195 1243 34 0 0 chr11 80043840 80043987 -41799869 - B1_Mm SINE Alu 0 147 1 1 1195 404 18 0 52 chr11 80043987 80044006 -41799850 + (T)n Simple_repeat Simple_repeat 1 17 0 1 1195 726 273 27 0 chr11 80044312 80044499 -41799357 - B3 SINE B2 -24 192 1 1 1195 417 297 63 0 chr11 80044537 80044648 -41799208 + RSINE1 SINE B4 4 121 -44 1 1195 198 0 0 0 chr11 80044648 80044670 -41799186 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1195 186 103 0 0 chr11 80044955 80044984 -41798872 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1195 606 167 0 9 chr11 80044985 80045100 -41798756 - B1_Mur3 SINE Alu 0 149 36 1 1195 445 210 242 6 chr11 80045117 80045299 -41798557 - L1MC5 LINE L1 -30 7931 7707 1 1195 785 279 23 28 chr11 80045328 80045542 -41798314 + B3 SINE B2 4 216 0 1 1195 22 35 0 0 chr11 80045576 80045605 -41798251 + AT_rich Low_complexity Low_complexity 1 29 0 1 1195 1160 68 0 0 chr11 80045608 80045754 -41798102 + B1_Mus1 SINE Alu 3 148 0 1 1195 201 281 66 66 chr11 80045928 80046065 -41797791 + L2c LINE L2 3017 3153 -234 1 1195 881 137 65 0 chr11 80046158 80046297 -41797559 - B1_Mur4 SINE Alu -2 148 1 1 1195 642 161 289 24 chr11 80046318 80046484 -41797372 - B3 SINE B2 -6 210 1 1 1195 715 203 8 0 chr11 80046531 80046659 -41797197 - B3 SINE B2 -86 130 2 1 1195 224 135 38 19 chr11 80047240 80047293 -41796563 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 1 1195 25 51 0 0 chr11 80047390 80047429 -41796427 + AT_rich Low_complexity Low_complexity 1 39 0 1 1195 2255 120 3 6 chr11 80047811 80048137 -41795719 - ORR1A2 LTR MaLR -2 325 1 1 1195 430 259 78 0 chr11 80048251 80048367 -41795489 - RSINE1 SINE B4 -37 128 4 1 1195 191 108 27 0 chr11 80048682 80048698 -41795158 + (TA)n Simple_repeat Simple_repeat 2 18 0 1 1195 387 0 0 0 chr11 80048698 80048741 -41795115 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1195 191 108 27 0 chr11 80048741 80048761 -41795095 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1195 279 216 40 0 chr11 80048855 80048929 -41794927 + RMER12 LTR ERVK 749 825 -497 1 1195 672 233 173 17 chr11 80048963 80049264 -41794592 - L1MB7 LINE L1 -134 6050 5703 1 1195 733 177 20 39 chr11 80049304 80049457 -41794399 - B1_Mur4 SINE Alu 0 150 1 1 1195 1900 172 24 16 chr11 80049504 80049877 -41793979 - MTB_Mm LTR MaLR -4 403 28 1 1195 560 188 10 0 chr11 80049871 80049972 -41793884 - B3 SINE B2 -113 103 2 1 1195 391 139 349 9 chr11 80049987 80050096 -41793760 - B1_Mus1 SINE Alu -1 147 2 1 1195 25 0 0 0 chr11 80050107 80050132 -41793724 + AT_rich Low_complexity Low_complexity 1 25 0 1 1195 306 147 15 0 chr11 80050132 80050200 -41793656 - Lx3_Mus LINE L1 0 7009 6941 1 1195 1165 106 6 0 chr11 80050228 80050398 -41793458 + B2_Mm1t SINE B2 1 171 -22 1 1195 306 143 313 26 chr11 80050435 80050550 -41793306 + B2_Mm2 SINE B2 48 195 0 1 1195 312 323 49 12 chr11 80050721 80050884 -41792972 + Cheshire DNA MER1_type 2 170 -2250 1 1195 616 287 45 30 chr11 80051020 80051286 -41792570 + Cheshire DNA MER1_type 1750 2019 -401 1 1195 533 262 15 15 chr11 80051294 80051426 -41792430 + RSINE1 SINE B4 4 135 -30 1 1195 207 69 0 0 chr11 80051456 80051485 -41792371 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1195 709 221 28 0 chr11 80051506 80051651 -41792205 + B1_Mur3 SINE Alu 1 149 0 1 1195 566 165 107 0 chr11 80052236 80052357 -41791499 + B1_Mur4 SINE Alu 16 149 -1 1 1195 204 122 0 0 chr11 80052606 80052647 -41791209 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1 1195 781 259 68 36 chr11 80052656 80052908 -41790948 - B4A SINE B4 0 292 33 2 1195 575 257 58 32 chr11 80053150 80053339 -41790517 + B3A SINE B2 1 194 -4 2 1195 368 289 52 7 chr11 80053390 80053543 -41790313 - RSINE1 SINE B4 -3 162 3 2 1195 811 211 0 7 chr11 80053853 80054001 -41789855 + B1_Mur3 SINE Alu 2 148 -1 2 1195 213 225 0 0 chr11 80054034 80054074 -41789782 - ID4_ SINE ID -6 77 38 2 1195 507 33 0 0 chr11 80054091 80054152 -41789704 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 2 1195 767 11 11 0 chr11 80054152 80054244 -41789612 + (TTTC)n Simple_repeat Simple_repeat 1 93 0 2 1195 850 257 82 11 chr11 80054295 80054563 -41789293 - B4A SINE B4 -5 287 1 2 1195 492 18 0 0 chr11 80054903 80054960 -41788896 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1195 774 124 29 14 chr11 80057132 80057271 -41786585 - B1_Mur4 SINE Alu -8 142 2 2 1195 355 213 8 122 chr11 80057163 80057286 -41786570 - MT2B LTR ERVL -341 260 152 2 1195 497 276 0 8 chr11 80057460 80057577 -41786279 - PB1D9 SINE Alu 0 120 5 2 1195 293 286 143 0 chr11 80057870 80057975 -41785881 + B1F2 SINE Alu 29 148 -1 2 1195 723 24 0 0 chr11 80058348 80058433 -41785423 + (TGG)n Simple_repeat Simple_repeat 2 86 0 2 1195 240 122 0 0 chr11 80058433 80058474 -41785382 + (CTG)n Simple_repeat Simple_repeat 2 42 0 2 1195 249 159 0 0 chr11 80058472 80058516 -41785340 + CT-rich Low_complexity Low_complexity 3 46 0 2 1195 848 147 0 0 chr11 80058647 80058776 -41785080 - B3 SINE B2 -86 130 2 2 1195 835 113 0 16 chr11 80058796 80058922 -41784934 - B1_Mus1 SINE Alu -1 147 24 2 1195 472 293 35 109 chr11 80058800 80059030 -41784826 - B4 SINE B4 -71 221 9 2 1195 289 292 0 33 chr11 80059055 80059076 -41784780 - PB1D10 SINE Alu -6 111 23 2 1195 299 257 0 14 chr11 80059076 80059147 -41784709 - ID_B1 SINE B4 -51 173 104 2 1195 400 116 164 12 chr11 80059944 80060052 -41783804 - B1_Mur3 SINE Alu -1 148 2 2 1195 205 296 24 12 chr11 80060863 80060945 -41782911 + CT-rich Low_complexity Low_complexity 6 88 0 2 1195 328 281 0 0 chr11 80061007 80061089 -41782767 - ID_B1 SINE B4 -6 218 137 2 1195 639 262 92 37 chr11 80061493 80061766 -41782090 + B4 SINE B4 2 289 -3 2 1195 664 229 153 5 chr11 80062098 80062287 -41781569 + ID_B1 SINE B4 7 223 -1 2 1195 837 211 86 11 chr11 80062288 80062475 -41781381 + B3 SINE B2 1 201 -15 2 1195 480 303 121 99 chr11 80062511 80062745 -41781111 + Lx8 LINE L1 7086 7350 -123 2 1195 943 140 211 0 chr11 80062745 80062916 -41780940 + B3 SINE B2 1 207 -9 2 1195 480 303 121 99 chr11 80062916 80063044 -41780812 + Lx8 LINE L1 7351 7456 -17 2 1195 243 277 138 0 chr11 80063265 80063359 -41780497 + ID_B1 SINE B4 111 217 -7 2 1195 192 111 0 0 chr11 80063419 80063455 -41780401 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1195 566 135 182 45 chr11 80063456 80063588 -41780268 - B1_Mur4 SINE Alu 0 150 1 2 1195 313 250 12 48 chr11 80064036 80064120 -41779736 - B1F SINE Alu -10 139 30 2 1195 1292 103 5 35 chr11 80064845 80065046 -41778810 + B2_Mm2 SINE B2 1 195 0 2 1195 311 175 0 75 chr11 80065063 80065135 -41778721 + B3A SINE B2 30 93 -105 2 1195 252 86 0 0 chr11 80065146 80065181 -41778675 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1195 622 162 0 64 chr11 80065228 80065353 -41778503 - B1_Mur1 SINE Alu 0 149 33 2 1195 261 0 0 0 chr11 80065353 80065382 -41778474 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1195 303 310 68 34 chr11 80065409 80065526 -41778330 + RSINE1 SINE B4 32 152 -13 2 1195 207 0 0 0 chr11 80065539 80065562 -41778294 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1195 1180 68 0 0 chr11 80065566 80065713 -41778143 + B1_Mus1 SINE Alu 2 148 0 2 1195 974 111 13 34 chr11 80066023 80066172 -41777684 + B1_Mur4 SINE Alu 5 150 0 2 1195 186 43 0 0 chr11 80066735 80066758 -41777098 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1195 1175 61 0 0 chr11 80067055 80067202 -41776654 + B1_Mus2 SINE Alu 1 147 0 2 1195 1600 36 0 54 chr11 80067521 80067725 -41776131 + B2_Mm1a SINE B2 1 193 0 2 1195 1398 74 0 26 chr11 80067743 80067937 -41775919 + B2_Mm2 SINE B2 1 189 -6 2 1195 404 325 113 0 chr11 80070031 80070182 -41773674 + AmnSINE1 SINE SINE 6 173 -402 2 1195 1629 32 21 0 chr11 80072471 80072659 -41771197 + B2_Mm1t SINE B2 2 193 0 2 1195 3342 57 34 9 chr11 80072810 80073253 -41770603 - L1Md_F2 LINE L1 -2 6580 6127 2 1195 235 263 0 66 chr11 80073770 80073831 -41770025 + PB1D7 SINE Alu 17 73 -47 2 1195 552 128 188 0 chr11 80073870 80073987 -41769869 + B1_Mus2 SINE Alu 9 147 0 2 1195 1135 101 75 29 chr11 80074056 80074229 -41769627 + B2_Mm2 SINE B2 1 181 -14 2 1195 313 55 42 75 chr11 80074264 80074336 -41769520 + B2_Mm1a SINE B2 127 188 -5 2 1195 279 233 33 22 chr11 80074754 80074846 -41769010 + PB1D9 SINE Alu 17 109 -11 2 1195 1561 152 110 6 chr11 80074872 80075191 -41768665 - ORR1B1 LTR MaLR -8 386 35 2 1195 195 69 0 0 chr11 80075192 80075221 -41768635 + (CTAGT)n Simple_repeat Simple_repeat 5 33 0 2 1195 6381 169 85 25 chr11 80075336 80076755 -41767101 - ORR1B1-int LTR MaLR -4 1505 1 2 1195 1549 143 166 9 chr11 80076759 80077090 -41766766 - ORR1B1 LTR MaLR -8 386 4 2 1195 240 111 0 0 chr11 80077389 80077425 -41766431 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1195 1193 14 14 0 chr11 80077435 80077574 -41766282 - B1_Mus1 SINE Alu -7 141 1 2 1195 211 224 0 0 chr11 80080718 80080767 -41763089 + T-rich Low_complexity Low_complexity 3 51 0 2 1195 501 264 38 19 chr11 80080774 80080932 -41762924 - RSINE1 SINE B4 -2 163 3 2 1195 332 208 0 5 chr11 80081120 80081201 -41762655 + B1_Mus2 SINE Alu 1 79 -69 2 1195 383 238 126 8 chr11 80081302 80081429 -41762427 - B1_Mur1 SINE Alu -7 142 1 2 1195 462 275 114 94 chr11 80082342 80082392 -41761464 - MER2 DNA MER2_type -13 332 284 2 1195 197 65 0 31 chr11 80082392 80082424 -41761432 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1195 462 275 114 94 chr11 80082424 80082618 -41761238 - MER2 DNA MER2_type -62 283 83 2 1195 296 298 0 0 chr11 80083037 80083094 -41760762 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 2 1195 1172 133 0 6 chr11 80083158 80083332 -41760524 - B2_Mm2 SINE B2 -19 176 4 2 1195 1020 57 0 0 chr11 80083337 80083477 -41760379 - B1_Mus1 SINE Alu -3 145 6 2 1195 379 206 0 97 chr11 80083378 80083491 -41760365 - MT2B LTR ERVL -343 258 157 2 1195 232 242 0 52 chr11 80083491 80083509 -41760347 - ORR1B1-int LTR MaLR -755 750 627 2 1195 1254 41 0 0 chr11 80083699 80083846 -41760010 + B1_Mm SINE Alu 1 147 0 2 1195 279 255 0 0 chr11 80083853 80083916 -41759940 - B4A SINE B4 -143 149 87 2 1195 22 0 0 0 chr11 80083970 80083992 -41759864 + AT_rich Low_complexity Low_complexity 1 22 0 2 1195 263 204 74 0 chr11 80084031 80084085 -41759771 - RSINE1 SINE B4 -25 140 83 2 1195 225 0 0 0 chr11 80084092 80084117 -41759739 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1195 629 222 71 7 chr11 80084125 80084279 -41759577 - B3A SINE B2 -34 164 1 2 1195 343 324 117 0 chr11 80084339 80084484 -41759372 - RSINE1 SINE B4 0 165 4 2 1195 265 264 0 27 chr11 80084515 80084589 -41759267 - RSINE1 SINE B4 -90 75 4 2 1196 289 331 105 0 chr11 80085236 80085369 -41758487 - MER58B DNA MER1_type -94 247 101 2 1196 271 320 65 75 chr11 80085407 80085701 -41758155 - B4A SINE B4 -1 291 1 2 1196 734 190 80 0 chr11 80085724 80085861 -41757995 - B1_Mur1 SINE Alu -1 148 1 2 1196 1444 70 27 0 chr11 80086331 80086516 -41757340 - B2_Mm2 SINE B2 -5 190 1 2 1196 912 66 116 0 chr11 80086810 80086931 -41756925 - B1_Mus2 SINE Alu -8 139 5 2 1196 3109 147 83 13 chr11 80087358 80087984 -41755872 - RMER6A LTR ERVK -86 670 1 2 1196 1116 119 0 17 chr11 80087984 80088164 -41755692 - URR1B DNA MER1_type 0 225 49 2 1196 871 141 37 7 chr11 80088520 80088656 -41755200 + B1_Mus2 SINE Alu 1 140 -7 2 1196 951 246 15 0 chr11 80088673 80088876 -41754980 - B3 SINE B2 -10 206 1 2 1196 215 380 46 8 chr11 80088895 80089025 -41754831 + L2a LINE L2 3272 3406 -20 2 1196 260 231 209 81 chr11 80089542 80089641 -41754215 - RMER12B LTR ERVK -120 1284 1198 2 1196 316 98 0 47 chr11 80089641 80089705 -41754151 + (CATA)n Simple_repeat Simple_repeat 1 61 0 2 1196 260 231 209 81 chr11 80089705 80089783 -41754073 - RMER12B LTR ERVK -207 1197 1094 2 1196 1162 89 0 0 chr11 80089783 80089929 -41753927 + B1_Mus2 SINE Alu 1 146 -1 2 1196 260 155 123 233 chr11 80089929 80090064 -41753792 - RMER12B LTR ERVK -311 1093 993 2 1196 308 200 63 51 chr11 80090251 80090330 -41753526 + B1_Mur3 SINE Alu 3 82 -67 2 1196 496 202 58 0 chr11 80090345 80090449 -41753407 + B1_Mur1 SINE Alu 40 149 0 2 1196 941 57 0 0 chr11 80090623 80090747 -41753109 - B2_Mm2 SINE B2 -70 125 2 2 1196 357 128 156 4 chr11 80090757 80090853 -41753003 - B2_Mm2 SINE B2 -19 176 46 2 1196 1176 104 34 28 chr11 80090884 80091062 -41752794 - B2_Mm1t SINE B2 -14 179 1 2 1196 180 111 0 0 chr11 80092183 80092210 -41751646 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1196 1119 36 72 0 chr11 80092210 80092348 -41751508 - B1_Mus1 SINE Alu 0 148 1 2 1196 350 250 23 108 chr11 80092419 80092449 -41751407 + MT2B LTR ERVL 139 157 -444 2 1196 536 208 20 0 chr11 80092449 80092550 -41751306 + B1_Mus2 SINE Alu 1 103 -44 2 1196 329 264 0 0 chr11 80092603 80092675 -41751181 - ID4 SINE ID -10 73 2 2 1196 309 273 114 7 chr11 80092676 80092816 -41751040 - MLT1F1 LTR MaLR -102 467 313 2 1196 222 143 0 0 chr11 80092856 80092891 -41750965 - B2_Mm2 SINE B2 -157 38 4 2 1196 634 127 73 80 chr11 80092926 80093063 -41750793 + B1_Mur3 SINE Alu 1 136 -13 3 1196 1516 41 0 63 chr11 80093133 80093339 -41750517 - B2_Mm1t SINE B2 0 193 1 3 1196 281 227 0 29 chr11 80093473 80093541 -41750315 - PB1D10 SINE Alu -29 88 23 3 1196 1074 72 5 28 chr11 80093569 80093784 -41750072 + (TG)n Simple_repeat Simple_repeat 1 209 0 3 1196 232 211 0 17 chr11 80093794 80093852 -41750004 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 3 1196 429 288 60 92 chr11 80093895 80094079 -41749777 - B4A SINE B4 -78 214 36 3 1196 1294 76 37 32 chr11 80094186 80094376 -41749480 + B2_Mm1a SINE B2 1 191 -2 3 1196 457 132 43 32 chr11 80094411 80094505 -41749351 + PB1D9 SINE Alu 26 120 0 3 1196 380 72 0 18 chr11 80094509 80094566 -41749290 + B2_Mm2 SINE B2 1 56 -139 3 1196 1026 63 0 0 chr11 80094599 80094741 -41749115 - B1_Mus1 SINE Alu 0 148 7 3 1196 1329 100 16 10 chr11 80094772 80094964 -41748892 - B2_Mm2 SINE B2 -1 194 2 3 1196 1167 62 7 0 chr11 80094996 80095141 -41748715 + B1_Mm SINE Alu 1 146 -1 3 1196 270 0 0 0 chr11 80095276 80095306 -41748550 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1196 396 0 0 0 chr11 80095306 80095349 -41748507 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1196 412 241 62 9 chr11 80095401 80095514 -41748342 - B3A SINE B2 -79 119 1 3 1196 237 65 0 0 chr11 80095525 80095556 -41748300 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1196 414 0 0 0 chr11 80095558 80095604 -41748252 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1196 957 68 0 8 chr11 80095771 80095904 -41747952 - B1_Mus1 SINE Alu 0 148 17 3 1196 967 68 8 0 chr11 80095915 80096048 -41747808 + B2_Mm1a SINE B2 1 134 -59 3 1196 387 0 0 0 chr11 80096048 80096091 -41747765 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1196 582 214 121 8 chr11 80096122 80096254 -41747602 - B1_Mur2 SINE Alu -2 147 1 3 1196 1031 106 143 0 chr11 80096378 80096539 -41747317 - B2_Mm2 SINE B2 -10 185 2 3 1196 1095 193 29 0 chr11 80096561 80096768 -41747088 - B3 SINE B2 -2 214 2 3 1196 278 283 7 20 chr11 80096776 80096906 -41746950 - B3A SINE B2 -36 180 4 3 1196 336 309 155 0 chr11 80096954 80097148 -41746708 - L1MEc LINE L1 -5179 1221 998 3 1196 351 44 0 0 chr11 80097303 80097348 -41746508 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1196 850 154 105 0 chr11 80097380 80097542 -41746314 + B2_Mm1t SINE B2 1 179 -14 3 1196 822 96 18 115 chr11 80097608 80097773 -41746083 + B2_Mm2 SINE B2 47 195 0 3 1196 266 270 170 67 chr11 80097778 80097913 -41745943 + B1F2 SINE Alu 1 149 0 3 1196 266 27 0 0 chr11 80098850 80098887 -41744969 - B1_Mm SINE Alu 0 147 111 3 1196 1319 73 17 6 chr11 80098887 80099066 -41744790 - B2_Mm2 SINE B2 -14 181 1 3 1196 906 167 156 0 chr11 80099279 80099465 -41744391 - B3 SINE B2 -1 215 1 3 1196 229 250 0 0 chr11 80099639 80099678 -41744178 + T-rich Low_complexity Low_complexity 31 69 0 3 1196 1260 67 82 16 chr11 80099678 80099860 -41743996 - B2_Mm2 SINE B2 -1 194 1 3 1196 229 250 0 0 chr11 80099860 80099888 -41743968 + T-rich Low_complexity Low_complexity 3 30 0 3 1196 1317 115 16 0 chr11 80099893 80100084 -41743772 - B2_Mm2 SINE B2 -1 194 1 3 1196 689 194 20 14 chr11 80100089 80100235 -41743621 - B1_Mus1 SINE Alu 0 148 2 3 1196 3201 63 5 0 chr11 80100360 80100756 -41743100 + MTB LTR MaLR 3 400 0 3 1196 770 189 13 26 chr11 80101365 80101517 -41742339 - B1_Mur4 SINE Alu 0 150 1 3 1196 1441 72 0 15 chr11 80101521 80101718 -41742138 - B2_Mm2 SINE B2 0 195 2 3 1196 693 179 19 70 chr11 80101789 80101945 -41741911 + B1_Mus1 SINE Alu 1 148 0 3 1196 281 306 57 127 chr11 80101976 80102204 -41741652 + ID_B1 SINE B4 1 212 -12 3 1196 1146 75 0 0 chr11 80102745 80102892 -41740964 - B1_Mus2 SINE Alu 0 147 1 3 1196 330 285 179 0 chr11 80104403 80104526 -41739330 + ID_B1 SINE B4 32 176 -48 3 1196 618 261 47 26 chr11 80104591 80104784 -41739072 + B3A SINE B2 2 198 0 3 1196 675 194 51 29 chr11 80104810 80104948 -41738908 + B1_Mur1 SINE Alu 3 143 -6 3 1196 966 209 56 5 chr11 80104951 80105148 -41738708 + B3 SINE B2 3 209 -7 3 1196 1250 34 0 0 chr11 80105157 80105304 -41738552 - B1_Mus1 SINE Alu 0 148 2 3 1196 28 0 0 0 chr11 80105305 80105333 -41738523 + AT_rich Low_complexity Low_complexity 1 28 0 3 1196 193 184 0 0 chr11 80105504 80105542 -41738314 - MIR SINE MIR -132 76 39 3 1196 221 371 36 0 chr11 80105678 80105818 -41738038 - MIR3 SINE MIR -23 185 41 3 1196 378 0 0 0 chr11 80106495 80106537 -41737319 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1196 442 197 0 0 chr11 80106546 80106617 -41737239 - ID4 SINE ID -11 72 2 3 1196 219 296 49 12 chr11 80106617 80106699 -41737157 - B1F SINE Alu -17 132 48 3 1196 1186 68 0 0 chr11 80106820 80106966 -41736890 + B1_Mus2 SINE Alu 2 147 0 3 1196 312 200 0 0 chr11 80107170 80107230 -41736626 + PB1D10 SINE Alu 42 101 -16 3 1196 207 0 0 0 chr11 80108126 80108149 -41735707 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 3 1196 192 77 0 0 chr11 80108549 80108575 -41735281 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1196 189 352 0 62 chr11 80109356 80109453 -41734403 + L2b LINE L2 3276 3366 -9 3 1196 615 152 95 25 chr11 80110058 80110190 -41733666 - B1_Mur1 SINE Alu -8 139 6 3 1196 629 239 8 12 chr11 80110369 80110620 -41733236 + (CA)n Simple_repeat Simple_repeat 1 249 0 3 1196 847 139 15 0 chr11 80110817 80110954 -41732902 - B1_Mur4 SINE Alu -6 144 6 3 1196 749 199 154 6 chr11 80111352 80111534 -41732322 - B3 SINE B2 0 216 8 3 1196 657 164 134 78 chr11 80111571 80111750 -41732106 - B2_Mm2 SINE B2 -5 190 2 3 1196 296 286 97 9 chr11 80111768 80111881 -41731975 + PB1 SINE Alu 3 125 -2 3 1196 1419 22 26 52 chr11 80111892 80112085 -41731771 + B2_Mm1t SINE B2 1 188 -5 3 1196 298 273 37 92 chr11 80112126 80112235 -41731621 - PB1 SINE Alu -24 103 1 3 1196 236 315 0 76 chr11 80112655 80112734 -41731122 + L2c LINE L2 3299 3371 -16 3 1196 244 157 0 19 chr11 80113522 80113574 -41730282 + G-rich Low_complexity Low_complexity 3 53 0 3 1196 180 0 0 0 chr11 80113775 80113795 -41730061 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 3 1196 201 74 0 0 chr11 80114261 80114288 -41729568 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 3 1196 36 53 0 0 chr11 80114288 80114345 -41729511 + GC_rich Low_complexity Low_complexity 1 57 0 3 1196 333 0 0 0 chr11 80115730 80115767 -41728089 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1196 323 289 24 13 chr11 80116947 80117068 -41726788 + B1F1 SINE Alu 1 126 -23 3 1196 423 0 0 0 chr11 80117154 80117201 -41726655 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1196 1136 68 0 0 chr11 80117220 80117367 -41726489 - B1_Mus1 SINE Alu -1 147 1 3 1196 911 202 58 10 chr11 80117367 80117571 -41726285 - B3 SINE B2 -1 215 1 3 1196 878 101 39 0 chr11 80117757 80117886 -41725970 - B1_Mus1 SINE Alu -12 136 3 3 1196 342 45 0 0 chr11 80118640 80118684 -41725172 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1196 435 206 0 47 chr11 80118858 80118965 -41724891 + BC1_Mm scRNA scRNA 3 104 -48 3 1196 880 168 106 6 chr11 80119090 80119270 -41724586 - B3 SINE B2 0 216 19 3 1196 2083 137 47 8 chr11 80119752 80120114 -41723742 - ORR1C1 LTR MaLR 0 378 3 3 1196 2614 117 50 2 chr11 80120188 80120590 -41723266 - MTC LTR MaLR 0 421 1 3 1196 443 285 13 26 chr11 80121213 80121368 -41722488 + RSINE1 SINE B4 3 155 -10 3 1196 546 211 0 35 chr11 80121659 80121772 -41722084 - B3 SINE B2 -107 109 1 3 1196 210 346 68 31 chr11 80121808 80121829 -41722027 - B2_Mm2 SINE B2 -12 183 17 3 1196 488 279 57 0 chr11 80121829 80121969 -41721887 - RSINE1 SINE B4 0 165 18 3 1196 1188 93 0 93 chr11 80122523 80122737 -41721119 - B2_Mm2 SINE B2 0 195 2 3 1196 1041 74 0 7 chr11 80122810 80122823 -41721033 - B1_Mus1 SINE Alu 0 148 136 3 1196 221 0 0 33 chr11 80122823 80122853 -41721003 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1196 1041 74 0 7 chr11 80122853 80122988 -41720868 - B1_Mus1 SINE Alu -13 135 1 3 1196 202 269 75 0 chr11 80123160 80123227 -41720629 - MIR3 SINE MIR -49 159 88 3 1196 761 137 32 0 chr11 80124167 80124291 -41719565 - B1_Mm SINE Alu -19 128 1 3 1196 270 0 0 0 chr11 80125507 80125537 -41718319 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1196 306 0 0 0 chr11 80125537 80125570 -41718286 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1196 189 0 0 0 chr11 80126782 80126803 -41717053 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1196 185 65 0 31 chr11 80127149 80127181 -41716675 + (TATG)n Simple_repeat Simple_repeat 1 31 0 3 1196 203 312 73 78 chr11 80127220 80127411 -41716445 + MIR SINE MIR 1 190 -72 3 1196 264 30 0 0 chr11 80127828 80127861 -41715995 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1196 648 56 0 0 chr11 80127861 80127949 -41715907 + (GA)n Simple_repeat Simple_repeat 1 89 0 3 1196 391 313 52 7 chr11 80127967 80128102 -41715754 - ID_B1 SINE B4 -2 222 82 3 1196 351 0 0 0 chr11 80128446 80128485 -41715371 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1196 1276 158 5 5 chr11 80130437 80130653 -41713203 + B3 SINE B2 1 216 0 4 1196 566 206 43 22 chr11 80130815 80130954 -41712902 - RSINE1 SINE B4 -7 158 17 4 1196 717 188 30 8 chr11 80130956 80131090 -41712766 + B1_Mur2 SINE Alu 2 138 -11 4 1196 279 0 0 0 chr11 80131090 80131121 -41712735 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1196 1053 43 50 0 chr11 80131137 80131276 -41712580 + B1_Mm SINE Alu 2 147 0 4 1196 462 263 8 41 chr11 80131342 80131465 -41712391 - RSINE1 SINE B4 -44 121 3 4 1196 229 246 16 0 chr11 80131824 80131885 -41711971 - ID4 SINE ID -19 64 3 4 1196 950 92 43 0 chr11 80132319 80132460 -41711396 + B1_Mur4 SINE Alu 4 150 0 4 1196 198 0 0 0 chr11 80132502 80132524 -41711332 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1196 628 141 0 0 chr11 80132807 80132906 -41710950 + B1_Mur4 SINE Alu 31 129 -21 4 1196 255 61 0 0 chr11 80132911 80132944 -41710912 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 4 1196 410 36 0 18 chr11 80133278 80133335 -41710521 + (TTTTTG)n Simple_repeat Simple_repeat 2 57 0 4 1196 1188 232 51 176 chr11 80133408 80133589 -41710267 - RMER5 LTR ERV1 -58 476 300 4 1196 1859 164 42 11 chr11 80133589 80133971 -41709885 - ORR1B1 LTR MaLR 0 394 1 4 1196 1188 232 51 176 chr11 80133971 80134119 -41709737 - RMER5 LTR ERV1 -235 299 199 4 1196 592 155 141 44 chr11 80134119 80134254 -41709602 + B1F2 SINE Alu 2 149 0 4 1196 1188 232 51 176 chr11 80134254 80134451 -41709405 - RMER5 LTR ERV1 -336 198 15 4 1196 447 269 87 16 chr11 80137283 80137468 -41706388 - B3A SINE B2 0 198 1 4 1196 373 163 60 14 chr11 80137484 80137594 -41706262 - B1F1 SINE Alu -7 142 30 4 1196 255 236 319 49 chr11 80138036 80138164 -41705692 - B3A SINE B2 -1 197 36 4 1196 1141 49 0 0 chr11 80138498 80138641 -41705215 + B1_Mm SINE Alu 5 147 0 4 1196 808 62 94 0 chr11 80138668 80138796 -41705060 - B2_Mm2 SINE B2 -54 141 2 4 1196 864 241 5 36 chr11 80138836 80139056 -41704800 + B3 SINE B2 2 214 -2 4 1196 604 144 10 0 chr11 80139072 80139176 -41704680 + B1_Mm SINE Alu 43 147 0 4 1196 267 272 102 7 chr11 80139727 80139864 -41703992 - RSINE1 SINE B4 -4 161 12 4 1196 930 220 20 20 chr11 80139918 80140122 -41703734 - B3 SINE B2 -12 204 1 4 1196 720 161 0 159 chr11 80140233 80140403 -41703453 + B1_Mur4 SINE Alu 8 150 0 4 1196 189 121 0 0 chr11 80140419 80140452 -41703404 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1196 321 287 53 0 chr11 80140452 80140546 -41703310 - PB1D9 SINE Alu -13 107 9 4 1196 1230 14 0 7 chr11 80140630 80140778 -41703078 + B1_Mm SINE Alu 1 147 0 4 1196 1130 95 11 63 chr11 80141155 80141329 -41702527 + B2_Mm2 SINE B2 3 172 -23 4 1196 1221 123 0 26 chr11 80141329 80141521 -41702335 - B2_Mm2 SINE B2 -6 189 3 4 1196 1130 95 11 63 chr11 80141521 80141537 -41702319 + B2_Mm2 SINE B2 173 183 -12 4 1196 989 127 12 0 chr11 80141537 80141702 -41702154 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 4 1196 239 363 22 0 chr11 80141804 80141939 -41701917 + Tigger15a DNA TcMar 540 677 -38 4 1196 238 292 90 0 chr11 80141941 80142030 -41701826 + L1MB3 LINE L1 5503 5599 -590 4 1196 608 185 239 17 chr11 80142037 80142213 -41701643 + B3 SINE B2 1 215 -1 4 1196 861 147 42 0 chr11 80142217 80142360 -41701496 - B1_Mur3 SINE Alu 0 149 1 4 1196 592 254 114 0 chr11 80142378 80142579 -41701277 + L1MB3 LINE L1 5593 5816 -367 4 1196 507 259 27 73 chr11 80142601 80142751 -41701105 + B1F SINE Alu 7 149 0 4 1196 315 305 32 32 chr11 80142917 80143073 -41700783 + L1MB3 LINE L1 5982 6137 -46 4 1196 288 0 0 0 chr11 80143114 80143146 -41700710 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1196 1066 132 26 26 chr11 80143213 80143407 -41700449 - B2_Mm2 SINE B2 0 195 2 4 1196 788 171 14 7 chr11 80143462 80143609 -41700247 + B1_Mur4 SINE Alu 2 149 -1 4 1196 1067 62 0 46 chr11 80143680 80143832 -41700024 + B1_Mus1 SINE Alu 1 145 -3 4 1196 301 226 15 23 chr11 80144305 80144386 -41699470 - ID4_ SINE ID -70 82 5 4 1196 190 319 0 99 chr11 80144569 80144670 -41699186 - L4 LINE RTE -208 1821 1731 4 1196 21 0 0 0 chr11 80144905 80144926 -41698930 + AT_rich Low_complexity Low_complexity 1 21 0 4 1196 345 62 0 0 chr11 80146075 80146123 -41697733 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1196 333 0 0 0 chr11 80146123 80146160 -41697696 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1196 336 306 0 0 chr11 80147101 80147186 -41696670 + PB1D10 SINE Alu 12 96 -21 4 1196 209 263 54 116 chr11 80147211 80147323 -41696533 - MIRb SINE MIR -127 141 37 4 1196 609 248 0 23 chr11 80147778 80147910 -41695946 + ID_B1 SINE B4 94 222 -2 4 1196 192 291 73 0 chr11 80147965 80148020 -41695836 + L2c LINE L2 3328 3386 -1 4 1196 338 323 24 24 chr11 80148038 80148165 -41695691 + L4 LINE RTE 921 1047 -982 4 1196 1144 48 0 14 chr11 80148451 80148599 -41695257 + B1_Mus2 SINE Alu 2 147 0 4 1196 315 0 0 0 chr11 80148606 80148641 -41695215 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 1196 288 275 32 32 chr11 80148664 80148758 -41695098 + ID_B1 SINE B4 78 171 -53 4 1196 386 221 19 25 chr11 80148680 80148786 -41695070 + B1F2 SINE Alu 15 114 -3 4 1196 296 116 0 0 chr11 80151371 80151414 -41692442 - MTC LTR MaLR 0 421 379 4 1196 1159 76 0 0 chr11 80151415 80151572 -41692284 + B2_Mm2 SINE B2 2 158 -37 4 1196 243 88 0 0 chr11 80151572 80151606 -41692250 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1196 1145 61 0 0 chr11 80151675 80151822 -41692034 + B1_Mm SINE Alu 1 147 0 4 1196 234 91 0 0 chr11 80151823 80151856 -41692000 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 4 1196 1011 102 0 13 chr11 80151867 80152016 -41691840 + B1_Mus1 SINE Alu 2 148 0 4 1196 204 40 0 0 chr11 80152201 80152226 -41691630 + (CTCA)n Simple_repeat Simple_repeat 3 27 0 4 1196 206 205 0 0 chr11 80152543 80152582 -41691274 + G-rich Low_complexity Low_complexity 1 39 0 4 1196 250 266 49 37 chr11 80152720 80152802 -41691054 - PB1D10 SINE Alu 0 117 35 4 1196 337 214 20 0 chr11 80152820 80152918 -41690938 + CT-rich Low_complexity Low_complexity 2 101 0 4 1196 322 240 72 63 chr11 80152921 80152946 -41690910 - ID_B1 SINE B4 -1 223 112 4 1196 485 174 23 0 chr11 80152946 80153032 -41690824 - B1F SINE Alu -31 118 31 4 1196 448 195 3 25 chr11 80153945 80154051 -41689805 + B1_Mus2 SINE Alu 20 144 -3 4 1196 262 270 0 0 chr11 80154045 80154108 -41689748 - MADE2 DNA Mariner -17 63 1 4 1196 372 296 96 0 chr11 80154423 80154558 -41689298 - RSINE1 SINE B4 -13 152 5 4 1196 229 311 64 55 chr11 80154709 80154818 -41689038 + B4 SINE B4 74 183 -109 4 1196 598 180 18 0 chr11 80154731 80154842 -41689014 + PB1D10 SINE Alu 5 117 0 4 1196 408 335 63 42 chr11 80154845 80155129 -41688727 + B4A SINE B4 1 290 -2 4 1196 432 0 0 0 chr11 80155194 80155242 -41688614 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1196 252 0 0 0 chr11 80155242 80155269 -41688587 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1196 638 152 6 17 chr11 80155669 80155849 -41688007 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1196 348 24 0 0 chr11 80155886 80155927 -41687929 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1196 292 188 0 0 chr11 80155928 80155976 -41687880 - ID4 SINE ID -10 73 26 4 1196 1159 119 11 17 chr11 80156582 80156761 -41687095 + B2_Mm1t SINE B2 2 179 -14 4 1196 473 76 333 28 chr11 80156807 80156915 -41686941 + B2_Mm2 SINE B2 47 187 -8 4 1196 371 172 161 0 chr11 80156982 80157069 -41686787 - ID_B1 SINE B4 -123 101 1 4 1196 334 267 22 0 chr11 80157233 80157323 -41686533 + PB1D10 SINE Alu 15 106 -11 4 1196 682 144 0 0 chr11 80157322 80157426 -41686430 - B1_Mur4 SINE Alu -32 118 15 4 1196 1207 41 0 0 chr11 80157426 80157573 -41686283 + B1_Mm SINE Alu 1 147 0 4 1196 222 227 88 29 chr11 80157663 80157731 -41686125 - BC1_Mm scRNA scRNA -61 91 20 4 1196 1270 96 11 0 chr11 80158013 80158201 -41685655 + B2_Mm1t SINE B2 1 190 -3 4 1196 360 164 0 0 chr11 80158403 80158470 -41685386 + CT-rich Low_complexity Low_complexity 3 69 0 4 1196 388 311 58 22 chr11 80158603 80158741 -41685115 - RSINE1 SINE B4 0 165 23 4 1196 22 35 0 0 chr11 80158747 80158776 -41685080 + AT_rich Low_complexity Low_complexity 1 29 0 4 1196 216 0 0 0 chr11 80158788 80158812 -41685044 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1196 776 138 0 8 chr11 80158812 80158935 -41684921 - B1_Mus2 SINE Alu -8 139 18 4 1196 438 252 0 35 chr11 80158935 80158956 -41684900 - ID_B1 SINE B4 -9 215 77 4 1196 413 158 40 0 chr11 80158961 80159062 -41684794 + CT-rich Low_complexity Low_complexity 3 107 0 4 1196 1306 105 16 0 chr11 80159105 80159296 -41684560 + B2_Mm2 SINE B2 1 194 -1 4 1196 270 244 46 35 chr11 80160433 80160671 -41683185 + (GGGTG)n Simple_repeat Simple_repeat 1 240 0 4 1196 848 240 72 5 chr11 80160811 80161020 -41682836 - ID_B1 SINE B4 -1 223 1 4 1196 1106 212 0 5 chr11 80161041 80161254 -41682602 - B3 SINE B2 -4 212 1 4 1196 448 182 177 26 chr11 80161277 80161390 -41682466 + B1_Mus1 SINE Alu 19 148 0 4 1196 226 182 45 0 chr11 80161414 80161458 -41682398 - B3A SINE B2 -152 46 1 4 1196 535 258 32 0 chr11 80161717 80161841 -41682015 + B1_Mur1 SINE Alu 7 134 -15 4 1196 1614 191 69 67 chr11 80161843 80161942 -41681914 - RMER4A LTR ERVK -3 463 373 4 1196 2754 130 107 164 chr11 80161942 80162352 -41681504 + RMER6A LTR ERVK 1 455 -301 5 1196 1402 72 0 20 chr11 80162352 80162551 -41681305 + B2_Mm2 SINE B2 1 195 0 5 1196 2754 130 107 164 chr11 80162551 80162566 -41681290 + RMER6A LTR ERVK 456 464 -292 5 1196 1384 67 0 25 chr11 80162566 80162764 -41681092 + B2_Mm2 SINE B2 2 194 -1 5 1196 2754 130 107 164 chr11 80162764 80162779 -41681077 + RMER6A LTR ERVK 465 469 -287 5 1196 1302 74 11 0 chr11 80162779 80162955 -41680901 + B2_Mm1t SINE B2 2 179 -14 5 1196 2754 130 107 164 chr11 80162955 80163100 -41680756 + RMER6A LTR ERVK 470 512 -244 5 1196 438 20 0 0 chr11 80163100 80163151 -41680705 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1196 2754 130 107 164 chr11 80163151 80163363 -41680493 + RMER6A LTR ERVK 513 756 0 5 1196 1614 191 69 67 chr11 80163363 80163395 -41680461 - RMER4A LTR ERVK -94 372 347 4 1196 327 25 0 0 chr11 80163395 80163435 -41680421 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1196 1614 191 69 67 chr11 80163435 80163719 -41680137 - RMER4A LTR ERVK -120 346 47 4 1196 754 205 85 20 chr11 80163719 80163918 -41679938 - B3 SINE B2 -2 214 3 5 1196 198 0 0 0 chr11 80163926 80163948 -41679908 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1196 1614 191 69 67 chr11 80163948 80163969 -41679887 - RMER4A LTR ERVK -429 37 17 4 1196 608 264 140 61 chr11 80164267 80164481 -41679375 + B4A SINE B4 1 231 -61 5 1196 839 176 0 0 chr11 80164491 80164633 -41679223 + B3 SINE B2 1 142 -74 5 1196 1655 142 10 59 chr11 80164635 80164941 -41678915 - ORR1B1 LTR MaLR -8 386 96 5 1196 1200 47 0 0 chr11 80164942 80165090 -41678766 + B1_Mus1 SINE Alu 1 148 0 5 1196 305 279 0 29 chr11 80165099 80165169 -41678687 + L1MEg LINE L1 1877 1944 -4140 5 1196 661 156 89 34 chr11 80165177 80165323 -41678533 + B2_Mm2 SINE B2 1 154 -41 5 1196 189 0 0 0 chr11 80165324 80165345 -41678511 + (CATA)n Simple_repeat Simple_repeat 2 22 0 5 1196 192 264 0 54 chr11 80165618 80165674 -41678182 + MIRc SINE MIR 103 155 -113 5 1196 589 269 0 40 chr11 80165686 80165838 -41678018 + B3A SINE B2 1 157 -36 5 1196 313 75 19 19 chr11 80165838 80165892 -41677964 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1196 375 324 43 16 chr11 80165892 80165927 -41677929 + B2_Mm1a SINE B2 158 192 -1 5 1196 436 252 101 0 chr11 80165944 80166063 -41677793 + B1_Mur2 SINE Alu 1 131 -18 5 1196 450 0 0 0 chr11 80166075 80166125 -41677731 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 5 1196 396 0 0 0 chr11 80167958 80168002 -41675854 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1196 1453 60 60 0 chr11 80169646 80169829 -41674027 + B2_Mm2 SINE B2 2 195 0 5 1196 680 159 21 17 chr11 80170410 80170600 -41673256 + (TA)n Simple_repeat Simple_repeat 1 190 0 5 1196 1369 79 39 6 chr11 80170600 80170778 -41673078 - B2_Mm2 SINE B2 -10 185 2 5 1196 447 99 30 17 chr11 80170778 80170886 -41672970 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1196 609 40 0 0 chr11 80171509 80171585 -41672271 + (TTTCC)n Simple_repeat Simple_repeat 1 76 0 5 1196 398 195 282 34 chr11 80171657 80171774 -41672082 + B1_Mus2 SINE Alu 1 146 -1 5 1196 782 48 10 0 chr11 80171822 80171925 -41671931 + ORR1A3 LTR MaLR 3 106 -221 5 1196 1168 59 0 0 chr11 80171925 80172060 -41671796 + B1_Mus1 SINE Alu 1 135 -13 5 1196 1080 76 5 74 chr11 80172060 80172190 -41671666 + ORR1A3 LTR MaLR 107 274 -52 5 1196 1554 73 16 0 chr11 80172190 80172382 -41671474 + B2_Mm2 SINE B2 1 195 0 5 1196 1080 68 0 81 chr11 80172382 80172428 -41671428 + ORR1A3 LTR MaLR 275 318 -8 5 1196 597 203 8 41 chr11 80172459 80172582 -41671274 - PB1D9 SINE Alu 0 120 2 5 1196 1085 71 0 0 chr11 80172614 80172754 -41671102 - B1_Mus1 SINE Alu 0 148 9 5 1196 695 221 8 8 chr11 80172979 80173111 -41670745 + B1_Mus2 SINE Alu 2 133 -14 5 1196 480 252 258 0 chr11 80173129 80173284 -41670572 + B4 SINE B4 3 197 -95 5 1196 778 90 131 0 chr11 80173494 80173616 -41670240 - B1_Mus2 SINE Alu -1 146 9 5 1196 315 185 111 71 chr11 80173528 80173627 -41670229 - MT2B LTR ERVL -337 264 162 5 1196 432 231 19 0 chr11 80174007 80174115 -41669741 - Lx2B LINE L1 -20 6980 6871 5 1196 846 48 0 0 chr11 80174263 80174368 -41669488 - B1_Mus2 SINE Alu 0 147 43 5 1196 984 151 14 7 chr11 80174525 80174672 -41669184 - B1_Mus1 SINE Alu 0 148 1 5 1196 215 211 0 0 chr11 80174906 80174944 -41668912 - RSINE1 SINE B4 -116 49 12 5 1196 821 235 122 0 chr11 80174954 80175158 -41668698 - B4 SINE B4 -63 229 1 5 1196 24 32 0 0 chr11 80175860 80175891 -41667965 + AT_rich Low_complexity Low_complexity 1 31 0 5 1196 539 289 0 62 chr11 80175895 80176039 -41667817 - B1_Mur1 SINE Alu -6 143 9 5 1196 889 180 209 0 chr11 80176296 80176468 -41667388 - B3 SINE B2 -7 209 2 5 1196 597 207 50 0 chr11 80176507 80176628 -41667228 - RSINE1 SINE B4 -36 129 3 5 1196 599 198 34 17 chr11 80176812 80176930 -41666926 - B1F SINE Alu -29 120 1 5 1196 524 140 192 39 chr11 80177623 80177727 -41666129 - PB1D9 SINE Alu 0 120 1 5 1196 1508 58 20 31 chr11 80177835 80178030 -41665826 + B2_Mm2 SINE B2 1 193 -2 5 1196 218 186 127 63 chr11 80178595 80178658 -41665198 - B3A SINE B2 -131 67 1 5 1196 189 0 0 0 chr11 80178683 80178704 -41665152 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1196 1083 58 0 0 chr11 80178704 80178843 -41665013 - B1_Mm SINE Alu 0 147 9 5 1196 560 104 40 40 chr11 80178875 80178975 -41664881 + B1_Mur3 SINE Alu 24 123 -26 5 1196 504 191 41 57 chr11 80179263 80179385 -41664471 + PB1D9 SINE Alu 1 120 0 5 1196 263 269 141 85 chr11 80179607 80179806 -41664050 + B4A SINE B4 27 236 -56 5 1196 225 256 0 0 chr11 80179805 80179848 -41664008 + RSINE1 SINE B4 108 150 -15 5 1196 416 243 189 0 chr11 80179902 80180013 -41663843 + RSINE1 SINE B4 2 133 -32 5 1196 591 316 82 57 chr11 80180066 80180348 -41663508 + B4A SINE B4 2 290 -2 5 1196 1280 35 7 0 chr11 80180391 80180536 -41663320 + B1_Mus2 SINE Alu 2 147 0 5 1196 210 158 0 0 chr11 80180538 80180576 -41663280 + A-rich Low_complexity Low_complexity 1 38 0 5 1196 891 44 0 0 chr11 80180594 80180708 -41663148 + B2_Mm1t SINE B2 78 191 -2 5 1196 553 231 0 110 chr11 80180721 80180857 -41662999 + B1_Mus2 SINE Alu 19 139 -8 5 1196 285 118 0 0 chr11 80180866 80180917 -41662939 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 5 1196 393 312 35 9 chr11 80180930 80181043 -41662813 + PB1D10 SINE Alu 1 116 -1 5 1196 1304 48 0 0 chr11 80181045 80181191 -41662665 + B1_Mus2 SINE Alu 2 147 0 5 1196 186 71 0 0 chr11 80181191 80181219 -41662637 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1196 456 273 61 0 chr11 80181261 80181360 -41662496 + PB1D10 SINE Alu 13 117 0 5 1196 222 37 0 0 chr11 80181837 80181864 -41661992 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1196 1249 62 0 0 chr11 80181864 80182010 -41661846 - B1_Mus2 SINE Alu 0 147 2 5 1196 25 0 0 0 chr11 80182248 80182273 -41661583 + AT_rich Low_complexity Low_complexity 1 25 0 5 1196 464 282 19 0 chr11 80182273 80182376 -41661480 - PB1D10 SINE Alu -4 113 9 5 1196 540 290 0 8 chr11 80182423 80182555 -41661301 - RSINE1 SINE B4 -23 142 12 5 1196 180 0 0 0 chr11 80182564 80182584 -41661272 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1196 377 226 36 0 chr11 80182605 80182689 -41661167 - RSINE1 SINE B4 -36 129 43 5 1196 240 325 35 11 chr11 80182871 80182958 -41660898 + RSINE1 SINE B4 1 89 -76 5 1196 252 0 0 0 chr11 80183122 80183150 -41660706 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1196 1053 100 21 0 chr11 80183258 80183398 -41660458 - B1_Mus1 SINE Alu -3 145 3 5 1196 476 308 23 0 chr11 80183471 80183601 -41660255 - ID_B1 SINE B4 -11 213 81 5 1196 419 164 14 0 chr11 80184034 80184107 -41659749 - B4A SINE B4 -2 290 217 5 1196 487 304 7 15 chr11 80184141 80184278 -41659578 - RSINE1 SINE B4 -21 144 9 5 1196 479 209 2 46 chr11 80184266 80184361 -41659495 - B4A SINE B4 -60 232 88 5 1196 1478 66 27 0 chr11 80184361 80184544 -41659312 - B2_Mm1t SINE B2 -5 188 1 5 1196 479 261 21 90 chr11 80184544 80184644 -41659212 - B4A SINE B4 -205 87 2 5 1196 488 333 81 23 chr11 80184664 80184836 -41659020 - B3A SINE B2 -10 188 7 5 1196 1231 70 126 17 chr11 80184879 80185053 -41658803 + B2_Mm2 SINE B2 1 193 -2 5 1196 1257 61 0 0 chr11 80185056 80185204 -41658652 + B1_Mus1 SINE Alu 1 148 0 5 1196 252 77 0 0 chr11 80185204 80185243 -41658613 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1196 556 134 20 64 chr11 80185256 80185371 -41658485 + B2_Mm2 SINE B2 27 141 -57 5 1196 227 340 0 0 chr11 80185377 80185427 -41658429 - B1F1 SINE Alu -98 51 2 5 1196 740 187 97 0 chr11 80185489 80185623 -41658233 - B1_Mus1 SINE Alu 0 148 2 5 1196 253 337 75 19 chr11 80185662 80185768 -41658088 - PB1D7 SINE Alu -37 112 1 5 1196 635 221 66 46 chr11 80186034 80186080 -41657776 - RSINE1 SINE B4 -6 159 105 5 1196 3389 63 5 2 chr11 80186080 80186479 -41657377 + MTB LTR MaLR 1 400 0 5 1196 635 221 66 46 chr11 80186479 80186584 -41657272 - RSINE1 SINE B4 -61 104 5 5 1196 1246 188 39 0 chr11 80186598 80186806 -41657050 - B3 SINE B2 0 216 1 5 1196 519 173 177 26 chr11 80186806 80186919 -41656937 - B1F2 SINE Alu -2 147 18 5 1196 661 227 47 0 chr11 80187272 80187400 -41656456 + B1_Mur2 SINE Alu 3 136 -13 5 1196 354 23 0 0 chr11 80187425 80187468 -41656388 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1196 800 187 43 7 chr11 80187918 80188058 -41655798 + B1_Mur1 SINE Alu 4 148 -1 5 1196 1198 186 19 14 chr11 80188115 80188322 -41655534 + B3 SINE B2 1 208 -8 5 1196 325 234 0 15 chr11 80189209 80189274 -41654582 - ID_B1 SINE B4 -16 208 145 5 1196 618 171 68 0 chr11 80189342 80189459 -41654397 + B1_Mur3 SINE Alu 25 149 0 5 1196 257 128 21 0 chr11 80189467 80189514 -41654342 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 5 1196 647 162 26 123 chr11 80189893 80190048 -41653808 + B1_Mur4 SINE Alu 9 148 -2 5 1196 738 217 217 0 chr11 80190613 80190779 -41653077 + B3 SINE B2 2 203 -13 6 1196 26 30 0 0 chr11 80190790 80190823 -41653033 + AT_rich Low_complexity Low_complexity 1 33 0 6 1196 804 233 25 45 chr11 80190826 80191028 -41652828 + B3A SINE B2 1 198 0 6 1196 29 47 0 0 chr11 80191298 80191341 -41652515 + GC_rich Low_complexity Low_complexity 1 43 0 6 1196 594 232 29 0 chr11 80191808 80191946 -41651910 + B1_Mur1 SINE Alu 1 142 -7 6 1196 23 0 0 0 chr11 80191946 80191969 -41651887 + AT_rich Low_complexity Low_complexity 1 23 0 6 1196 1141 60 0 19 chr11 80191969 80192123 -41651733 + B2_Mm2 SINE B2 2 152 -43 6 1196 1536 44 5 16 chr11 80192123 80192308 -41651548 + B2_Mm1a SINE B2 4 186 -7 6 1196 402 151 0 0 chr11 80192524 80192597 -41651259 + T-rich Low_complexity Low_complexity 1 73 0 6 1196 1574 39 50 0 chr11 80192667 80192846 -41651010 - B2_Mm1t SINE B2 -5 188 1 6 1196 292 274 22 108 chr11 80193089 80193148 -41650708 - MLT1A0 LTR MaLR 0 365 319 6 1196 580 244 102 8 chr11 80193148 80193276 -41650580 + B1_Mur1 SINE Alu 4 143 -6 6 1196 399 259 20 61 chr11 80193295 80193443 -41650413 - MLT1A0 LTR MaLR -52 313 172 6 1196 244 297 76 0 chr11 80193448 80193467 -41650389 - L1M4 LINE L1 -813 5333 5313 6 1196 1260 48 0 0 chr11 80193467 80193613 -41650243 - B1_Mus2 SINE Alu 0 147 2 6 1196 381 220 75 0 chr11 80193613 80193712 -41650144 - L1M4 LINE L1 -834 5312 5206 6 1196 1399 82 38 21 chr11 80193757 80193943 -41649913 + B2_Mm2 SINE B2 1 189 -6 6 1196 659 156 9 0 chr11 80193972 80194081 -41649775 + B1_Mus2 SINE Alu 34 143 -4 6 1196 586 284 60 20 chr11 80194098 80194249 -41649607 + B3A SINE B2 1 157 -41 6 1196 1790 198 44 8 chr11 80194237 80194599 -41649257 - RLTR14 LTR ERV1 -7 375 1 6 1196 414 227 126 9 chr11 80194737 80194848 -41649008 - ID_B1 SINE B4 -95 129 6 6 1196 200 118 29 0 chr11 80194973 80195007 -41648849 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 1196 646 72 149 26 chr11 80195024 80195138 -41648718 - B1_Mur4 SINE Alu -1 149 22 6 1196 249 256 174 83 chr11 80195029 80195161 -41648695 - B4A SINE B4 -68 224 81 6 1196 735 107 0 0 chr11 80195388 80195491 -41648365 + B1_Mus1 SINE Alu 1 103 -45 6 1196 269 54 0 0 chr11 80195487 80195524 -41648332 - B2_Mm2 SINE B2 -158 37 1 6 1196 349 296 86 17 chr11 80195535 80195652 -41648204 - ID_B1 SINE B4 -9 215 91 6 1196 557 216 101 31 chr11 80195832 80195961 -41647895 - B1_Mm SINE Alu -9 138 1 6 1196 24 0 0 0 chr11 80195967 80195991 -41647865 + AT_rich Low_complexity Low_complexity 1 24 0 6 1196 388 284 29 10 chr11 80195991 80196094 -41647762 - PB1 SINE Alu -2 125 21 6 1196 499 146 172 39 chr11 80196368 80196496 -41647360 + B1_Mm SINE Alu 3 147 0 6 1196 180 0 0 0 chr11 80196515 80196535 -41647321 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1196 216 97 0 0 chr11 80197515 80197546 -41646310 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1196 301 297 155 8 chr11 80197874 80198003 -41645853 - B4 SINE B4 -60 232 85 6 1196 483 163 143 0 chr11 80197904 80198002 -41645854 - B1_Mus1 SINE Alu -36 112 1 6 1196 255 211 70 96 chr11 80198002 80198017 -41645839 - MT2B LTR ERVL -336 263 154 6 1196 242 291 62 12 chr11 80198048 80198128 -41645728 - PB1D9 SINE Alu -36 84 1 6 1196 650 197 16 0 chr11 80198287 80198414 -41645442 - B1_Mur3 SINE Alu 0 149 21 6 1196 380 276 79 86 chr11 80198289 80198428 -41645428 - B4 SINE B4 -69 223 86 6 1196 307 263 73 136 chr11 80198314 80198534 -41645322 - MT2B LTR ERVL -322 279 74 6 1196 409 284 134 55 chr11 80198497 80198548 -41645308 - ID_B1 SINE B4 -6 218 164 6 1196 679 192 58 0 chr11 80198548 80198668 -41645188 - B1_Mur4 SINE Alu -19 131 5 6 1196 409 284 134 55 chr11 80198668 80198817 -41645039 - ID_B1 SINE B4 -61 163 2 6 1196 1242 62 14 0 chr11 80198879 80199025 -41644831 - B1_Mus1 SINE Alu 0 148 1 6 1196 261 0 0 0 chr11 80199068 80199097 -41644759 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1196 630 220 110 18 chr11 80199097 80199273 -41644583 - B3 SINE B2 -24 192 1 6 1196 420 245 9 70 chr11 80199792 80199906 -41643950 - B1F2 SINE Alu -8 141 35 6 1196 399 302 106 0 chr11 80200005 80200184 -41643672 - B3A SINE B2 0 198 1 6 1196 304 311 0 13 chr11 80200262 80200337 -41643519 + ID4 SINE ID 3 76 -7 6 1196 427 307 147 0 chr11 80200408 80200558 -41643298 - B3A SINE B2 -26 172 1 6 1196 592 126 0 0 chr11 80200616 80200703 -41643153 - B1_Mur4 SINE Alu -1 149 63 6 1196 716 217 35 0 chr11 80201079 80201222 -41642634 - B1_Mur4 SINE Alu 0 150 3 6 1196 26 0 0 0 chr11 80201276 80201302 -41642554 + AT_rich Low_complexity Low_complexity 1 26 0 6 1196 1583 44 28 0 chr11 80201626 80201808 -41642048 - B2_Mm1a SINE B2 -5 188 2 6 1196 408 325 24 0 chr11 80201839 80201962 -41641894 - B3 SINE B2 -21 195 70 6 1196 1281 48 0 0 chr11 80201991 80202137 -41641719 - B1_Mus2 SINE Alu -1 146 1 6 1196 433 252 42 5 chr11 80202259 80202389 -41641467 - B3 SINE B2 -19 197 66 6 1196 211 235 118 0 chr11 80202352 80202403 -41641453 - B1_Mur4 SINE Alu -78 72 16 6 1196 189 0 0 0 chr11 80202898 80202919 -41640937 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1196 1286 112 45 0 chr11 80203501 80203679 -41640177 + B2_Mm2 SINE B2 1 186 -9 6 1196 430 285 61 15 chr11 80203716 80203848 -41640008 + B1_Mur2 SINE Alu 4 141 -8 6 1196 200 167 0 0 chr11 80204048 80204078 -41639778 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1196 244 268 28 0 chr11 80204092 80204163 -41639693 + ID4_ SINE ID 11 83 0 6 1196 363 264 132 0 chr11 80205035 80205141 -41638715 + B1_Mur1 SINE Alu 23 142 -7 6 1196 255 215 158 108 chr11 80205141 80205153 -41638703 + B4 SINE B4 107 230 -62 6 1196 323 231 71 80 chr11 80205812 80205925 -41637931 + PB1D9 SINE Alu 9 120 0 6 1196 1076 60 45 0 chr11 80207290 80207424 -41636432 + B1_Mm SINE Alu 1 140 -7 6 1196 249 33 0 0 chr11 80208805 80208835 -41635021 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1196 420 214 10 58 chr11 80210897 80211001 -41632855 + B1_Mur4 SINE Alu 47 145 -5 6 1196 23 68 0 0 chr11 80212150 80212194 -41631662 + AT_rich Low_complexity Low_complexity 1 44 0 6 1196 617 180 58 36 chr11 80212896 80213034 -41630822 - B1_Mm SINE Alu -5 142 2 6 1196 426 231 5 33 chr11 80213401 80213500 -41630356 + PB1D7 SINE Alu 15 115 -34 6 1196 220 314 21 85 chr11 80214288 80214382 -41629474 + PB1D9 SINE Alu 2 89 -31 6 1196 25 0 0 0 chr11 80214520 80214545 -41629311 + AT_rich Low_complexity Low_complexity 1 25 0 6 1196 1238 49 7 0 chr11 80214549 80214693 -41629163 - B1_Mus1 SINE Alu -1 147 3 6 1196 21 0 0 0 chr11 80214836 80214857 -41628999 + AT_rich Low_complexity Low_complexity 1 21 0 6 1196 359 200 53 13 chr11 80215324 80215400 -41628456 + ID4_ SINE ID 3 81 -2 6 1197 291 310 39 39 chr11 80216708 80216812 -41627044 + ID_B1 SINE B4 72 175 -49 6 1197 342 287 75 0 chr11 80216728 80216822 -41627034 + PB1D9 SINE Alu 7 107 -13 6 1197 216 0 0 0 chr11 80216824 80216848 -41627008 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1197 31 26 0 0 chr11 80217394 80217432 -41626424 + AT_rich Low_complexity Low_complexity 1 38 0 6 1197 240 254 118 15 chr11 80217478 80217546 -41626310 + MT2B LTR ERVL 167 241 -360 6 1197 241 306 27 14 chr11 80217495 80217568 -41626288 + PB1D9 SINE Alu 35 108 -12 6 1197 272 236 96 14 chr11 80217633 80217706 -41626150 + B3A SINE B2 53 131 -67 6 1197 189 0 0 0 chr11 80217770 80217791 -41626065 + (C)n Simple_repeat Simple_repeat 1 21 0 6 1197 242 324 45 73 chr11 80218674 80218784 -41625072 - B3 SINE B2 -31 185 79 6 1197 459 0 0 0 chr11 80219453 80219504 -41624352 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1197 447 275 30 22 chr11 80219519 80219653 -41624203 - B1_Mm SINE Alu -11 136 2 6 1197 273 250 118 0 chr11 80219836 80219912 -41623944 - B1_Mus1 SINE Alu -26 122 38 6 1197 360 278 0 30 chr11 80219976 80220076 -41623780 - B3A SINE B2 -98 100 4 6 1197 769 242 80 30 chr11 80220219 80220419 -41623437 - B3 SINE B2 -5 211 2 6 1197 233 266 30 30 chr11 80221037 80221103 -41622753 + ID_B1 SINE B4 130 195 -29 6 1197 1198 90 65 43 chr11 80221124 80221310 -41622546 + B2_Mm2 SINE B2 2 191 -4 6 1197 771 53 97 0 chr11 80221487 80221600 -41622256 - B1_Mm SINE Alu -20 127 4 6 1197 216 0 0 0 chr11 80221613 80221637 -41622219 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1197 1033 84 14 34 chr11 80221647 80221795 -41622061 - B1_Mus1 SINE Alu 0 148 4 6 1197 222 343 38 57 chr11 80222230 80222335 -41621521 - PB1D10 SINE Alu -2 115 13 6 1197 847 111 273 7 chr11 80222371 80222525 -41621331 - B2_Mm2 SINE B2 0 195 1 6 1197 333 361 0 25 chr11 80222927 80223049 -41620807 + RSINE1 SINE B4 47 165 0 6 1197 393 271 98 0 chr11 80223075 80223197 -41620659 + B1_Mur1 SINE Alu 1 134 -15 6 1197 606 153 83 15 chr11 80223208 80223341 -41620515 + B1_Mur4 SINE Alu 5 146 -4 6 1197 217 162 27 0 chr11 80223399 80223436 -41620420 + B3A SINE B2 89 126 -72 6 1197 552 274 20 7 chr11 80223608 80223755 -41620101 - B1_Mur4 SINE Alu -1 149 1 6 1197 256 307 43 99 chr11 80224018 80224159 -41619697 + B1_Mur1 SINE Alu 8 140 -9 7 1197 371 270 30 10 chr11 80224408 80224509 -41619347 + PB1D7 SINE Alu 13 115 -5 7 1197 545 214 30 8 chr11 80224651 80224783 -41619073 - B1_Mur1 SINE Alu -13 136 2 7 1197 300 83 0 0 chr11 80224852 80224900 -41618956 + (T)n Simple_repeat Simple_repeat 1 48 0 7 1197 186 43 0 0 chr11 80224898 80224921 -41618935 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1197 1043 57 28 14 chr11 80224937 80225079 -41618777 - B1_Mm SINE Alu 0 147 4 7 1197 781 254 0 71 chr11 80225137 80225349 -41618507 - B3 SINE B2 -17 199 3 7 1197 254 231 53 18 chr11 80225494 80225568 -41618288 + PB1D10 SINE Alu 9 86 -63 7 1197 232 266 156 21 chr11 80225640 80225736 -41618120 + B3A SINE B2 21 129 -69 7 1197 708 140 18 0 chr11 80225850 80225964 -41617892 + PB1D9 SINE Alu 5 120 0 7 1197 753 107 29 37 chr11 80225973 80226109 -41617747 + B2_Mm2 SINE B2 27 161 -34 7 1197 1516 63 16 0 chr11 80226134 80226323 -41617533 + B2_Mm2 SINE B2 1 192 -3 7 1197 379 282 34 27 chr11 80226330 80226414 -41617442 + B1F SINE Alu 3 87 -62 7 1197 1137 132 32 5 chr11 80226414 80226604 -41617252 - B2_Mm2 SINE B2 0 195 1 7 1197 379 282 34 27 chr11 80226604 80226665 -41617191 + B1F SINE Alu 88 148 -1 7 1197 516 72 0 0 chr11 80227449 80227518 -41616338 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 7 1197 279 188 0 0 chr11 80227560 80227608 -41616248 - PB1D9 SINE Alu -72 48 1 7 1197 211 263 0 66 chr11 80227608 80227621 -41616235 - ID_B1 SINE B4 -95 129 73 7 1197 1230 98 54 16 chr11 80227869 80228055 -41615801 - B2_Mm1t SINE B2 0 193 1 7 1197 775 71 9 0 chr11 80228090 80228202 -41615654 - B1_Mus1 SINE Alu -34 114 2 7 1197 541 174 3 42 chr11 80228419 80228543 -41615313 + B1_Mur4 SINE Alu 1 120 0 7 1197 319 267 0 0 chr11 80229023 80229098 -41614758 + ID_B1 SINE B4 80 154 -70 7 1197 1192 90 22 17 chr11 80229107 80229287 -41614569 + B2_Mm2 SINE B2 1 181 -14 7 1197 219 36 0 0 chr11 80229290 80229318 -41614538 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1197 367 289 139 117 chr11 80229626 80229722 -41614134 + B4 SINE B4 1 85 -207 7 1197 784 226 94 5 chr11 80229722 80229913 -41613943 - B3 SINE B2 -7 209 2 7 1197 367 289 139 117 chr11 80229913 80230075 -41613781 + B4 SINE B4 86 268 -24 7 1197 525 32 0 0 chr11 80230075 80230138 -41613718 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1197 367 289 139 117 chr11 80230138 80230152 -41613704 + B4 SINE B4 269 280 -12 7 1197 2981 141 121 14 chr11 80230535 80231156 -41612700 + RMER6C LTR ERVK 3 689 -1 7 1197 1139 75 7 0 chr11 80231156 80231302 -41612554 + B1_Mus2 SINE Alu 1 147 0 7 1197 234 0 0 0 chr11 80231302 80231328 -41612528 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1197 1089 56 28 0 chr11 80231386 80231528 -41612328 + B1_Mus1 SINE Alu 1 146 -2 7 1197 1298 79 40 0 chr11 80231896 80232073 -41611783 - B2_Mm2 SINE B2 -7 188 5 7 1197 1470 54 38 0 chr11 80232225 80232410 -41611446 - B2_Mm2 SINE B2 -2 193 2 7 1197 666 162 17 25 chr11 80232477 80232597 -41611259 + B1_Mur3 SINE Alu 25 143 -6 7 1197 345 308 12 88 chr11 80232641 80232812 -41611044 - RSINE1 SINE B4 -6 159 2 7 1197 337 247 0 0 chr11 80232835 80232920 -41610936 - PB1D9 SINE Alu -2 118 34 7 1197 304 293 40 10 chr11 80232935 80233035 -41610821 + B1F SINE Alu 4 106 -43 7 1197 443 284 49 7 chr11 80233307 80233449 -41610407 + RSINE1 SINE B4 3 150 -15 7 1197 195 266 0 0 chr11 80233499 80233563 -41610293 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1197 611 220 14 41 chr11 80233638 80233785 -41610071 - B1_Mur3 SINE Alu -2 147 5 7 1197 1671 107 70 56 chr11 80234367 80234722 -41609134 + RMER16 LTR ERVK 2 533 0 7 1197 1115 65 0 0 chr11 80234722 80234871 -41608985 - B2_Mm2 SINE B2 -44 151 3 7 1197 1092 202 15 10 chr11 80234934 80235139 -41608717 - B3 SINE B2 -6 210 5 7 1197 1166 55 0 7 chr11 80235189 80235326 -41608530 + B1_Mus1 SINE Alu 2 138 -10 7 1197 183 42 0 0 chr11 80235326 80235350 -41608506 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1197 676 86 256 0 chr11 80235632 80235749 -41608107 - B1_Mus1 SINE Alu 0 148 2 7 1197 725 218 142 11 chr11 80235975 80236165 -41607691 + B3 SINE B2 2 216 0 7 1197 763 200 0 0 chr11 80236362 80236492 -41607364 + B1_Mus1 SINE Alu 6 135 -13 7 1197 827 78 0 0 chr11 80236482 80236597 -41607259 - B1_Mm SINE Alu -32 115 1 7 1197 192 97 0 0 chr11 80236618 80236649 -41607207 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 7 1197 360 244 226 24 chr11 80236824 80236992 -41606864 + ID_B1 SINE B4 2 203 -21 7 1197 426 175 0 0 chr11 80236992 80237072 -41606784 + GA-rich Low_complexity Low_complexity 1 80 0 7 1197 1108 102 0 0 chr11 80237099 80237246 -41606610 - B1_Mus2 SINE Alu 0 147 1 7 1197 1282 85 80 0 chr11 80237254 80237430 -41606426 - B2_Mm2 SINE B2 -4 191 2 7 1197 865 45 0 0 chr11 80237839 80237951 -41605905 + B1_Mus2 SINE Alu 29 140 -7 7 1197 550 49 24 0 chr11 80237953 80238035 -41605821 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1197 330 312 33 76 chr11 80238445 80238629 -41605227 + B3A SINE B2 6 181 -17 7 1197 690 38 14 58 chr11 80238645 80238783 -41605073 + (TTCTC)n Simple_repeat Simple_repeat 5 136 0 7 1197 1034 88 37 6 chr11 80238842 80239003 -41604853 - B2_Mm2 SINE B2 -28 167 2 7 1197 253 118 0 73 chr11 80239003 80239047 -41604809 - B1_Mus1 SINE Alu -108 40 1 7 1197 948 61 0 164 chr11 80239570 80239747 -41604109 - B1_Mur4 SINE Alu -1 149 2 7 1197 240 35 0 0 chr11 80239750 80239779 -41604077 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1197 1101 69 21 0 chr11 80239797 80239941 -41603915 + B1_Mus2 SINE Alu 1 147 0 7 1197 1340 79 22 6 chr11 80239945 80240123 -41603733 - B2_Mm2 SINE B2 -14 181 1 7 1197 1178 35 7 20 chr11 80240306 80240442 -41603414 + B1_Mus2 SINE Alu 2 138 -9 7 1197 258 32 0 0 chr11 80240442 80240473 -41603383 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1197 474 65 0 0 chr11 80240486 80240548 -41603308 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 7 1197 1216 55 0 0 chr11 80240566 80240711 -41603145 + B1_Mm SINE Alu 3 147 0 7 1197 398 304 68 0 chr11 80240779 80240927 -41602929 + RSINE1 SINE B4 8 165 0 7 1197 192 40 0 0 chr11 80241025 80241050 -41602806 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1197 1054 118 0 0 chr11 80243231 80243375 -41600481 - B1_Mus2 SINE Alu 0 147 4 7 1197 24 0 0 0 chr11 80244361 80244385 -41599471 + AT_rich Low_complexity Low_complexity 1 24 0 7 1197 1649 37 0 0 chr11 80244393 80244584 -41599272 - B2_Mm1a SINE B2 -1 192 2 7 1197 1247 34 0 0 chr11 80244586 80244733 -41599123 - B1_Mus2 SINE Alu 0 147 1 7 1197 31 21 0 20 chr11 80245049 80245075 -41598781 + AT_rich Low_complexity Low_complexity 1 26 0 7 1197 688 34 0 0 chr11 80245075 80245163 -41598693 - L1Md_T LINE L1 -1 6581 6494 7 1197 31 21 0 20 chr11 80245163 80245185 -41598671 + AT_rich Low_complexity Low_complexity 1 22 0 7 1197 914 206 11 11 chr11 80245919 80246105 -41597751 + B3 SINE B2 1 186 -30 7 1197 1460 80 0 5 chr11 80246266 80246455 -41597401 + B2_Mm2 SINE B2 4 191 -4 7 1197 801 9 248 34 chr11 80246460 80246577 -41597279 + B1_Mus1 SINE Alu 1 142 -6 7 1197 384 40 0 0 chr11 80246579 80246629 -41597227 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 7 1197 762 199 7 0 chr11 80246732 80246868 -41596988 + B1_Mur2 SINE Alu 11 147 -2 7 1197 350 238 213 0 chr11 80247018 80247140 -41596716 - B1_Mur2 SINE Alu 0 149 2 7 1197 1215 41 7 0 chr11 80247413 80247559 -41596297 + B1_Mus1 SINE Alu 2 148 0 7 1197 440 298 83 56 chr11 80247962 80248300 -41595556 + L3 LINE CR1 2790 3136 -1353 7 1197 826 119 40 34 chr11 80248302 80248450 -41595406 + B1_Mur4 SINE Alu 1 149 -1 7 1197 447 256 111 41 chr11 80248603 80248774 -41595082 + MER58A DNA MER1_type 37 219 -5 7 1197 21 0 0 0 chr11 80248888 80248909 -41594947 + AT_rich Low_complexity Low_complexity 1 21 0 7 1197 29 0 0 0 chr11 80248946 80248975 -41594881 + AT_rich Low_complexity Low_complexity 1 29 0 7 1197 351 0 0 0 chr11 80249115 80249154 -41594702 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1197 1150 56 28 0 chr11 80249200 80249344 -41594512 - B1_Mus1 SINE Alu 0 148 1 7 1197 584 88 0 0 chr11 80249569 80249649 -41594207 + B2_Mm2 SINE B2 1 80 -115 7 1197 541 333 15 44 chr11 80250073 80250277 -41593579 + B3A SINE B2 1 198 0 7 1197 1023 50 0 14 chr11 80250326 80250467 -41593389 - B1_Mm SINE Alu 0 147 9 7 1197 820 150 16 0 chr11 80250479 80250606 -41593250 + B1_Mus1 SINE Alu 20 148 0 7 1197 326 214 61 97 chr11 80251073 80251187 -41592669 - PB1D7 SINE Alu -10 110 1 7 1197 210 143 0 0 chr11 80251288 80251323 -41592533 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1197 969 53 0 0 chr11 80251325 80251457 -41592399 - B1_Mus2 SINE Alu 0 147 16 7 1197 212 330 152 0 chr11 80252382 80252500 -41591356 - L2a LINE L2 -12 3414 3279 7 1197 829 250 53 10 chr11 80252714 80252920 -41590936 - B3 SINE B2 0 216 2 7 1197 711 204 14 21 chr11 80253274 80253419 -41590437 - B1_Mur1 SINE Alu 0 149 6 7 1197 563 204 50 21 chr11 80253649 80253789 -41590067 - B1F2 SINE Alu -5 144 1 8 1197 405 269 74 0 chr11 80253791 80253899 -41589957 - PB1D10 SINE Alu -1 116 1 8 1197 1446 84 16 0 chr11 80254264 80254455 -41589401 - B2_Mm2 SINE B2 -1 194 1 8 1197 1142 48 7 14 chr11 80254710 80254858 -41588998 - B1_Mm SINE Alu 0 147 1 8 1197 600 267 113 18 chr11 80254862 80255030 -41588826 - B3 SINE B2 0 216 33 8 1197 243 171 283 18 chr11 80255030 80255143 -41588713 - B2_Mm2 SINE B2 0 195 53 8 1197 948 115 134 6 chr11 80255177 80255334 -41588522 - B2_Mm1t SINE B2 -14 179 3 8 1197 1089 193 51 0 chr11 80255498 80255695 -41588161 - B3 SINE B2 -9 207 1 8 1197 441 272 0 0 chr11 80255947 80256039 -41587817 + RSINE1 SINE B4 2 93 -72 8 1197 640 148 323 13 chr11 80256383 80256541 -41587315 - B3 SINE B2 -9 207 1 8 1197 985 121 7 26 chr11 80256712 80256865 -41586991 + B1_Mur4 SINE Alu 1 150 0 8 1197 1187 81 115 0 chr11 80257257 80257431 -41586425 - B2_Mm2 SINE B2 -1 194 1 8 1197 331 282 84 89 chr11 80257741 80257932 -41585924 - B3A SINE B2 -5 193 4 8 1197 617 97 0 10 chr11 80257941 80258045 -41585811 - L1_Mus3 LINE L1 0 6638 6536 8 1197 889 84 122 0 chr11 80258058 80258189 -41585667 - B1_Mm SINE Alu 0 147 1 8 1197 724 189 34 27 chr11 80258392 80258539 -41585317 - B1_Mur2 SINE Alu 0 149 2 8 1197 322 162 27 0 chr11 80258971 80259045 -41584811 + CT-rich Low_complexity Low_complexity 1 76 0 8 1197 946 153 209 6 chr11 80259939 80260116 -41583740 - B3 SINE B2 -3 213 1 8 1197 567 274 30 70 chr11 80260136 80260336 -41583520 - B3A SINE B2 -6 192 1 8 1197 300 336 103 0 chr11 80260415 80260522 -41583334 - RSINE1 SINE B4 -14 151 34 8 1197 691 264 109 39 chr11 80260609 80260838 -41583018 + B4 SINE B4 13 257 -35 8 1197 535 243 47 40 chr11 80260919 80261069 -41582787 + B4 SINE B4 3 153 -139 8 1197 627 57 0 0 chr11 80261126 80261214 -41582642 + (CA)n Simple_repeat Simple_repeat 2 89 0 8 1197 1235 77 77 11 chr11 80261301 80261484 -41582372 - B2_Mm2 SINE B2 0 195 1 8 1197 493 208 340 19 chr11 80261845 80262001 -41581855 - B3 SINE B2 -6 210 5 8 1197 228 35 0 0 chr11 80262009 80262038 -41581818 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1197 1107 66 0 0 chr11 80262038 80262175 -41581681 - B1_Mus1 SINE Alu -11 137 1 8 1197 1142 61 0 51 chr11 80262812 80262968 -41580888 - B1_Mus1 SINE Alu 0 148 1 8 1197 277 182 0 0 chr11 80263410 80263465 -41580391 - B2_Mm2 SINE B2 -94 101 47 8 1197 1042 92 110 0 chr11 80263531 80263694 -41580162 - B2_Mm2 SINE B2 -14 181 1 8 1197 539 189 62 42 chr11 80264882 80265026 -41578830 - B1_Mur3 SINE Alu -1 148 2 8 1197 194 0 39 0 chr11 80265062 80265088 -41578768 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1197 1101 65 0 0 chr11 80265088 80265226 -41578630 - B1_Mus1 SINE Alu -9 139 2 8 1197 553 152 48 56 chr11 80265302 80265427 -41578429 - B1_Mur1 SINE Alu 0 149 26 8 1197 440 267 106 40 chr11 80265441 80265640 -41578216 - B4 SINE B4 -74 218 7 8 1197 704 262 111 35 chr11 80265710 80265999 -41577857 - L1MB8 LINE L1 -80 6098 5788 8 1197 183 85 42 21 chr11 80266121 80266169 -41577687 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 8 1197 727 69 259 0 chr11 80266169 80266285 -41577571 - B1_Mus1 SINE Alu 0 148 3 8 1197 338 265 111 0 chr11 80266331 80266448 -41577408 - L1MB8 LINE L1 -673 5511 5382 8 1197 200 245 0 0 chr11 80266465 80266497 -41577359 + T-rich Low_complexity Low_complexity 20 51 0 8 1197 1287 20 0 0 chr11 80266497 80266644 -41577212 - B1_Mm SINE Alu 0 147 1 8 1197 200 245 0 0 chr11 80266644 80266660 -41577196 + T-rich Low_complexity Low_complexity 4 19 0 8 1197 276 269 62 44 chr11 80266671 80266784 -41577072 - PB1D10 SINE Alu 0 117 3 8 1197 505 233 0 37 chr11 80267002 80267109 -41576747 - B1_Mus2 SINE Alu -43 104 2 8 1197 429 332 43 34 chr11 80267322 80267531 -41576325 - B4A SINE B4 0 292 82 8 1197 796 56 9 0 chr11 80267574 80267682 -41576174 - B1_Mus1 SINE Alu 0 148 40 8 1197 479 251 32 142 chr11 80267725 80267943 -41575913 + B4 SINE B4 11 204 -88 8 1197 720 177 0 8 chr11 80267834 80267959 -41575897 + B1_Mus2 SINE Alu 6 129 -18 8 1197 595 237 17 0 chr11 80268130 80268248 -41575608 - PB1D9 SINE Alu 0 120 1 8 1197 406 239 83 25 chr11 80268308 80268428 -41575428 - B1F SINE Alu -13 136 10 8 1197 285 270 124 0 chr11 80268584 80268673 -41575183 - PB1D10 SINE Alu -1 116 17 8 1197 212 0 36 0 chr11 80268881 80268909 -41574947 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1197 976 56 0 0 chr11 80268909 80269035 -41574821 - B1_Mus2 SINE Alu -11 136 11 8 1197 479 192 7 118 chr11 80268933 80269069 -41574787 - MT2B LTR ERVL -337 264 144 8 1197 302 279 71 32 chr11 80269158 80269284 -41574572 + B4A SINE B4 136 266 -26 8 1197 942 196 74 0 chr11 80269363 80269552 -41574304 - B3 SINE B2 -13 203 1 8 1197 302 258 0 0 chr11 80269613 80269679 -41574177 + B1_Mur1 SINE Alu 77 142 -7 8 1197 1532 68 5 0 chr11 80269986 80270178 -41573678 - B2_Mm1a SINE B2 0 193 1 8 1197 189 0 0 0 chr11 80270439 80270460 -41573396 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1197 536 0 0 15 chr11 80270734 80270799 -41573057 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 8 1197 720 211 68 6 chr11 80270802 80270964 -41572892 - B3 SINE B2 -17 199 28 8 1197 430 247 59 111 chr11 80271149 80271267 -41572589 + B3A SINE B2 78 187 -8 8 1197 837 162 80 75 chr11 80271275 80271488 -41572368 + Lx4B LINE L1 6841 7054 -4 8 1197 670 138 122 0 chr11 80271616 80271739 -41572117 - B1_Mur3 SINE Alu -8 141 4 8 1197 222 290 65 0 chr11 80271779 80271841 -41572015 - PB1D10 SINE Alu -31 86 21 8 1197 551 67 419 9 chr11 80271872 80271977 -41571879 - B1_Mus1 SINE Alu 0 148 1 8 1197 754 234 119 5 chr11 80272098 80272291 -41571565 - B3 SINE B2 0 216 2 8 1197 984 29 7 35 chr11 80272400 80272543 -41571313 + B1_Mus2 SINE Alu 9 147 0 8 1197 276 231 62 0 chr11 80273166 80273231 -41570625 + PB1D9 SINE Alu 1 69 -51 8 1197 1267 101 39 0 chr11 80273300 80273478 -41570378 - B2_Mm2 SINE B2 -9 186 2 8 1197 594 292 81 0 chr11 80273515 80273700 -41570156 - ID_B1 SINE B4 -2 222 23 8 1197 186 314 130 7 chr11 80273907 80274061 -41569795 + MIR3 SINE MIR 35 207 -1 8 1197 282 264 0 0 chr11 80274635 80274688 -41569168 - ID SINE ID -143 81 29 8 1197 289 237 34 0 chr11 80274641 80274700 -41569156 - ID4 SINE ID -9 74 14 8 1197 34 24 0 0 chr11 80274708 80274749 -41569107 + AT_rich Low_complexity Low_complexity 1 41 0 8 1197 316 268 24 12 chr11 80274749 80274832 -41569024 + CT-rich Low_complexity Low_complexity 1 84 0 8 1197 976 122 13 7 chr11 80274911 80275060 -41568796 - B1_Mur4 SINE Alu 0 150 1 8 1197 180 163 0 0 chr11 80275063 80275106 -41568750 + T-rich Low_complexity Low_complexity 4 46 0 8 1197 754 67 242 8 chr11 80275111 80275231 -41568625 - B1_Mus1 SINE Alu 0 148 1 8 1197 1015 195 75 0 chr11 80275248 80275448 -41568408 - B3 SINE B2 0 216 2 8 1197 371 239 0 14 chr11 80275532 80275604 -41568252 - ID4 SINE ID -8 75 5 8 1197 200 214 0 67 chr11 80275701 80275761 -41568095 + CT-rich Low_complexity Low_complexity 1 56 0 8 1197 500 189 132 0 chr11 80275776 80275882 -41567974 - PB1D9 SINE Alu 0 120 1 8 1197 212 149 0 41 chr11 80276059 80276108 -41567748 + T-rich Low_complexity Low_complexity 3 49 0 8 1197 1320 86 11 0 chr11 80276581 80276756 -41567100 + B2_Mm1t SINE B2 2 178 -15 8 1197 703 92 227 0 chr11 80276757 80276876 -41566980 + B1_Mus2 SINE Alu 2 147 0 8 1197 625 144 8 113 chr11 80277314 80277336 -41566520 + PB1D9 SINE Alu 1 16 -104 8 1197 1486 68 5 0 chr11 80277336 80277527 -41566329 - B2_Mm1a SINE B2 0 193 2 8 1197 625 144 8 113 chr11 80277527 80277637 -41566219 + PB1D9 SINE Alu 17 119 -1 8 1197 201 74 0 0 chr11 80278476 80278503 -41565353 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1197 808 93 8 0 chr11 80278652 80278770 -41565086 + B1_Mus1 SINE Alu 29 147 -1 8 1197 369 283 78 0 chr11 80278928 80279094 -41564762 + B3A SINE B2 3 181 -17 8 1197 405 102 0 0 chr11 80279095 80279154 -41564702 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1197 729 179 37 0 chr11 80279373 80279507 -41564349 - B1_Mur4 SINE Alu 0 150 12 8 1197 560 27 14 0 chr11 80279517 80279591 -41564265 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 8 1197 1105 58 0 0 chr11 80279591 80279728 -41564128 - B1_Mus2 SINE Alu -10 137 1 8 1197 186 111 0 0 chr11 80279733 80279746 -41564110 + (T)n Simple_repeat Simple_repeat 1 13 0 8 1197 1417 58 21 0 chr11 80279746 80279934 -41563922 - B2_Mm1t SINE B2 -1 192 1 8 1197 186 111 0 0 chr11 80279934 80279956 -41563900 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1197 1371 32 31 46 chr11 80279956 80280151 -41563705 - B2_Mm1t SINE B2 0 193 2 8 1197 397 239 73 9 chr11 80280186 80280296 -41563560 - PB1D10 SINE Alu 0 117 1 8 1197 1577 102 40 8 chr11 80280433 80280681 -41563175 + RMER1C Other Other 963 1218 -124 8 1197 2066 157 164 9 chr11 80280681 80281143 -41562713 - RMER4B LTR ERVK 0 585 52 9 1197 614 67 0 11 chr11 80281152 80281242 -41562614 + RMER1C Other Other 1254 1342 0 8 1197 481 146 12 0 chr11 80281300 80281382 -41562474 + B1_Mus2 SINE Alu 63 145 -2 9 1197 340 52 0 49 chr11 80281407 80281468 -41562388 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 9 1197 2750 132 194 14 chr11 80281842 80282394 -41561462 - RLTR33 LTR ERVK 0 678 28 9 1197 822 274 120 32 chr11 80282503 80282942 -41560914 - RMER13A LTR ERVK -227 681 95 9 1197 260 122 0 24 chr11 80283038 80283080 -41560776 - RLTR33 LTR ERVK -637 41 1 9 1197 631 244 24 19 chr11 80284306 80284482 -41559374 + B3 SINE B2 8 183 -15 9 1197 309 51 0 0 chr11 80284482 80284521 -41559335 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1197 351 0 0 0 chr11 80284521 80284559 -41559297 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 1197 622 265 31 57 chr11 80284559 80284573 -41559283 + B3A SINE B2 184 193 -5 9 1197 381 43 0 0 chr11 80284595 80284642 -41559214 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 1197 1166 83 0 0 chr11 80284644 80284801 -41559055 - B2_Mm2 SINE B2 -38 157 1 9 1197 22 0 0 0 chr11 80284811 80284833 -41559023 + AT_rich Low_complexity Low_complexity 1 22 0 9 1197 183 80 0 0 chr11 80285411 80285436 -41558420 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1197 198 103 0 0 chr11 80286091 80286120 -41557736 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1197 33 0 0 0 chr11 80286152 80286185 -41557671 + AT_rich Low_complexity Low_complexity 1 33 0 9 1197 414 0 0 0 chr11 80286377 80286423 -41557433 + (TCCC)n Simple_repeat Simple_repeat 2 47 0 9 1197 335 247 191 6 chr11 80287137 80287299 -41556557 + MER33 DNA MER1_type 27 239 -85 9 1197 1230 95 0 11 chr11 80287299 80287480 -41556376 + B2_Mm2 SINE B2 1 179 -16 9 1197 324 261 221 0 chr11 80287480 80287558 -41556298 + MER33 DNA MER1_type 240 323 -1 9 1197 552 169 15 273 chr11 80288226 80288486 -41555370 + MT2A LTR ERVL 1 193 -340 9 1197 230 277 118 10 chr11 80289157 80289259 -41554597 + B1F SINE Alu 6 118 -31 9 1197 250 227 25 62 chr11 80289400 80289480 -41554376 + MLT1A1 LTR MaLR 316 392 -16 9 1197 240 137 0 0 chr11 80290149 80290200 -41553656 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 9 1197 189 0 0 0 chr11 80290453 80290474 -41553382 + (CGGGG)n Simple_repeat Simple_repeat 5 25 0 9 1197 201 167 24 0 chr11 80290486 80290528 -41553328 + G-rich Low_complexity Low_complexity 5 47 0 9 1197 21 57 0 0 chr11 80290966 80291001 -41552855 + GC_rich Low_complexity Low_complexity 1 35 0 9 1197 198 0 0 0 chr11 80293271 80293293 -41550563 + (CTGGGG)n Simple_repeat Simple_repeat 1 22 0 9 1197 207 214 0 0 chr11 80294021 80294063 -41549793 + A-rich Low_complexity Low_complexity 1 42 0 9 1197 206 103 0 49 chr11 80294400 80294441 -41549415 + T-rich Low_complexity Low_complexity 2 40 0 9 1197 309 284 42 10 chr11 80298431 80298527 -41545329 + B1F SINE Alu 21 119 -30 9 1197 360 0 0 0 chr11 80298811 80298851 -41545005 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1197 268 337 10 59 chr11 80300676 80300777 -41543079 - PB1D10 SINE Alu -1 116 21 9 1197 263 290 108 5 chr11 80302026 80302294 -41541562 + L1MB7 LINE L1 5696 6000 -184 9 1197 736 214 167 0 chr11 80303791 80303983 -41539873 - URR1B DNA MER1_type 0 225 2 9 1197 276 232 43 43 chr11 80305223 80305340 -41538516 + Lx9 LINE L1 7527 7643 -1 9 1197 370 252 58 10 chr11 80305390 80305494 -41538362 + RSINE1 SINE B4 1 109 -56 9 1197 709 274 55 5 chr11 80305705 80305907 -41537949 + B3 SINE B2 2 213 -3 9 1197 3638 62 0 4 chr11 80307168 80307657 -41536199 + RLTR1C LTR ERV1 1 487 -16 9 1197 302 290 111 42 chr11 80307675 80307819 -41536037 - MIRb SINE MIR -40 228 75 9 1197 227 203 68 0 chr11 80308093 80308167 -41535689 - ID4 SINE ID -4 79 1 9 1197 239 268 169 0 chr11 80309311 80309382 -41534474 - PB1D7 SINE Alu -7 113 31 9 1197 573 252 7 36 chr11 80310566 80310706 -41533150 + ID_B1 SINE B4 84 219 -5 9 1197 599 0 14 0 chr11 80310716 80310787 -41533069 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1197 383 250 84 16 chr11 80310864 80311030 -41532826 - B3A SINE B2 -34 182 3 9 1197 729 167 21 28 chr11 80311072 80311214 -41532642 - B1_Mur1 SINE Alu 0 149 9 9 1197 407 280 36 102 chr11 80311083 80311250 -41532606 - B4 SINE B4 -73 219 64 9 1197 498 220 181 8 chr11 80314101 80314234 -41529622 - Tigger7 DNA MER2_type -6 2485 2330 9 1197 575 150 50 22 chr11 80314235 80314409 -41529447 + B2_Mm2 SINE B2 1 183 -10 9 1197 323 293 53 118 chr11 80314422 80314592 -41529264 + B4A SINE B4 7 165 -127 9 1197 457 266 57 19 chr11 80314788 80314945 -41528911 + RSINE1 SINE B4 3 165 0 9 1197 1115 70 0 0 chr11 80315179 80315321 -41528535 + B1_Mus2 SINE Alu 1 142 -5 9 1197 198 0 0 0 chr11 80315324 80315346 -41528510 + (CAA)n Simple_repeat Simple_repeat 2 23 0 9 1197 204 125 0 0 chr11 80315746 80315778 -41528078 + (GGA)n Simple_repeat Simple_repeat 2 33 0 9 1197 464 259 28 0 chr11 80315784 80315892 -41527964 + ID_B1 SINE B4 82 192 -32 9 1197 404 285 48 16 chr11 80315892 80315909 -41527947 + B1F2 SINE Alu 1 129 -20 9 1197 833 101 50 14 chr11 80316213 80316354 -41527502 + B1_Mus2 SINE Alu 1 146 -1 9 1197 260 302 29 77 chr11 80316407 80316511 -41527345 + RSINE1 SINE B4 67 165 0 9 1197 488 264 41 7 chr11 80316595 80316740 -41527116 + ID_B1 SINE B4 2 151 -73 9 1197 229 269 30 79 chr11 80316693 80316794 -41527062 + PB1D7 SINE Alu 24 119 -1 9 1197 261 297 0 0 chr11 80316886 80316950 -41526906 - PB1 SINE Alu -38 89 26 9 1197 225 0 0 0 chr11 80317845 80317870 -41525986 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1197 261 312 167 0 chr11 80319534 80319630 -41524226 + PB1D10 SINE Alu 1 112 -5 9 1197 867 190 12 0 chr11 80320293 80320456 -41523400 - B3 SINE B2 -4 212 48 9 1197 365 255 54 9 chr11 80320949 80321060 -41522796 + PB1D10 SINE Alu 1 116 -1 9 1197 556 167 0 53 chr11 80321190 80321380 -41522476 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 9 1197 333 0 0 0 chr11 80321959 80321996 -41521860 + (T)n Simple_repeat Simple_repeat 1 37 0 9 1197 284 225 40 105 chr11 80323263 80323316 -41520540 - BC1_Mm scRNA scRNA -36 116 1 9 1197 299 296 0 0 chr11 80323316 80323387 -41520469 - ID SINE ID -153 71 1 9 1197 258 210 16 0 chr11 80324429 80324491 -41519365 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 1197 212 240 60 0 chr11 80324491 80324541 -41519315 - PB1D7 SINE Alu -3 117 65 9 1197 387 243 87 35 chr11 80324497 80324612 -41519244 - ID_B1 SINE B4 -9 215 95 9 1197 544 241 50 121 chr11 80325122 80325320 -41518536 - B4 SINE B4 0 292 109 9 1197 1184 42 0 0 chr11 80325349 80325491 -41518365 + B1_Mm SINE Alu 1 142 -5 9 1197 726 254 16 26 chr11 80326624 80326814 -41517042 - B3A SINE B2 -10 188 1 9 1197 526 343 41 0 chr11 80327922 80328091 -41515765 + MER58A DNA MER1_type 37 212 -12 9 1197 600 251 111 49 chr11 80328297 80328523 -41515333 + L1MB8 LINE L1 5812 6051 -127 9 1197 21 0 0 0 chr11 80329682 80329703 -41514153 + AT_rich Low_complexity Low_complexity 1 21 0 9 1197 351 0 0 0 chr11 80330039 80330078 -41513778 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1197 610 189 31 123 chr11 80330568 80330731 -41513125 + B1_Mur2 SINE Alu 1 148 -1 9 1197 1458 38 38 0 chr11 80331125 80331308 -41512548 + B2_Mm2 SINE B2 2 191 -4 9 1197 946 238 58 51 chr11 80331314 80331571 -41512285 - B4 SINE B4 0 292 34 9 1197 417 20 0 0 chr11 80332037 80332087 -41511769 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1197 273 261 0 14 chr11 80332947 80333017 -41510839 - MIRb SINE MIR -93 175 107 9 1197 264 236 103 9 chr11 80333390 80333497 -41510359 + PB1D10 SINE Alu 1 117 0 9 1197 914 136 20 0 chr11 80334328 80334475 -41509381 - B1_Mur4 SINE Alu 0 150 1 9 1197 276 328 49 25 chr11 80335042 80335164 -41508692 + L2b LINE L2 3250 3374 -1 9 1197 207 350 0 24 chr11 80335399 80335522 -41508334 + CT-rich Low_complexity Low_complexity 1 120 0 9 1197 1117 206 5 14 chr11 80335833 80336050 -41507806 + B3 SINE B2 2 216 0 9 1197 1185 78 76 27 chr11 80336050 80336234 -41507622 + B2_Mm2 SINE B2 2 194 -1 9 1197 215 238 0 73 chr11 80337393 80337461 -41506395 + ID4 SINE ID 7 69 -14 9 1197 212 273 74 49 chr11 80337461 80337474 -41506382 + ID SINE ID 7 89 -135 9 1197 1231 54 0 0 chr11 80337608 80337756 -41506100 - B1_Mus1 SINE Alu 0 148 1 9 1197 535 202 28 0 chr11 80337765 80337874 -41505982 - PB1D9 SINE Alu -6 114 3 9 1197 696 216 176 0 chr11 80338036 80338212 -41505644 + B3 SINE B2 2 208 -8 9 1197 228 318 82 31 chr11 80338470 80338665 -41505191 + L1M5 LINE L1 5573 5777 -347 9 1197 433 187 302 72 chr11 80338893 80339032 -41504824 + B3 SINE B2 1 171 -45 9 1197 390 271 90 35 chr11 80339022 80339167 -41504689 + B3A SINE B2 42 194 -4 9 1197 297 0 0 0 chr11 80339174 80339207 -41504649 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1197 1235 41 0 0 chr11 80339207 80339353 -41504503 - B1_Mus2 SINE Alu 0 147 2 9 1197 1015 136 203 0 chr11 80339844 80340021 -41503835 - B3 SINE B2 0 216 4 9 1197 494 224 132 0 chr11 80340693 80340845 -41503011 + MIR SINE MIR 33 204 -58 9 1197 227 261 0 0 chr11 80340887 80340933 -41502923 - U6 snRNA snRNA -61 46 1 1 1197 1262 108 0 6 chr11 80341092 80341269 -41502587 + B2_Mm2 SINE B2 1 176 -19 1 1197 591 268 7 74 chr11 80341269 80341418 -41502438 + B3A SINE B2 27 165 -33 1 1197 539 198 82 60 chr11 80341576 80341710 -41502146 - B3A SINE B2 -61 137 1 1 1197 486 185 7 36 chr11 80341710 80341849 -41502007 - RCHARR1 DNA MER1_type -464 510 376 1 1197 753 160 23 0 chr11 80341868 80341999 -41501857 - B1_Mur3 SINE Alu 0 149 16 1 1197 210 71 0 0 chr11 80342002 80342030 -41501826 + (CCA)n Simple_repeat Simple_repeat 2 29 0 1 1197 450 276 99 6 chr11 80342035 80342206 -41501650 - RCHARR1 DNA MER1_type -603 371 185 1 1197 293 250 15 0 chr11 80342200 80342268 -41501588 - B3A SINE B2 -129 69 1 1 1197 444 239 77 0 chr11 80342313 80342430 -41501426 + ID_B1 SINE B4 82 207 -17 1 1197 378 0 0 0 chr11 80343451 80343493 -41500363 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1197 1238 35 0 0 chr11 80343607 80343752 -41500104 - B1_Mm SINE Alu 0 147 3 1 1197 36 23 0 0 chr11 80343895 80343938 -41499918 + AT_rich Low_complexity Low_complexity 1 43 0 1 1197 238 271 17 0 chr11 80343951 80344010 -41499846 + ID_B1 SINE B4 84 143 -81 1 1197 228 282 113 0 chr11 80344010 80344021 -41499835 + PB1D10 SINE Alu 3 80 -37 1 1197 227 341 90 42 chr11 80344890 80345034 -41498822 + MamSINE1 SINE tRNA 105 255 -35 1 1197 492 18 0 0 chr11 80345403 80345460 -41498396 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1198 1123 235 23 4 chr11 80347393 80347649 -41496207 - Lx9 LINE L1 -220 7424 7164 1 1198 274 284 0 0 chr11 80348028 80348095 -41495761 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1198 277 219 51 2 chr11 80348319 80348400 -41495456 - PB1D10 SINE Alu -41 86 1 1 1198 225 246 46 0 chr11 80348344 80348409 -41495447 - ID_B1 SINE B4 -84 140 73 1 1198 298 0 23 0 chr11 80348753 80348797 -41495059 + B1_Mus2 SINE Alu 103 147 0 1 1198 333 62 0 0 chr11 80348803 80348851 -41495005 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1198 231 36 0 0 chr11 80348869 80348897 -41494959 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1198 1223 102 31 21 chr11 80349021 80349212 -41494644 - B2_Mm2 SINE B2 -2 193 1 1 1198 266 235 13 117 chr11 80349800 80349877 -41493979 - RSINE1 SINE B4 -95 70 2 1 1198 901 254 10 0 chr11 80349895 80350092 -41493764 - ID_B1 SINE B4 -24 200 2 1 1198 415 259 65 0 chr11 80351216 80351324 -41492532 - PB1D7 SINE Alu -1 119 5 1 1198 678 135 0 11 chr11 80351523 80351643 -41492213 - B1_Mur4 SINE Alu -34 116 3 1 1198 1169 101 11 0 chr11 80352385 80352563 -41491293 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1 1198 41 21 0 0 chr11 80352967 80353015 -41490841 + AT_rich Low_complexity Low_complexity 1 48 0 1 1198 481 167 0 19 chr11 80353085 80353189 -41490667 + G-rich Low_complexity Low_complexity 3 104 0 1 1198 306 299 34 79 chr11 80353189 80353454 -41490402 + RLTR12B LTR ERVK 242 494 -34 1 1198 675 227 50 70 chr11 80353545 80353713 -41490143 - B3A SINE B2 0 198 42 1 1198 990 91 173 18 chr11 80353713 80353881 -41489975 + B2_Mm2 SINE B2 1 194 -1 1 1198 675 227 50 70 chr11 80353881 80353911 -41489945 - B3A SINE B2 -157 41 4 1 1198 955 191 156 25 chr11 80353912 80354111 -41489745 + URR1B DNA MER1_type 1 225 0 1 1198 266 262 191 0 chr11 80354420 80354504 -41489352 - RSINE1 SINE B4 -54 111 12 1 1198 958 238 5 19 chr11 80354948 80355158 -41488698 + B3 SINE B2 2 208 -8 1 1198 365 331 57 11 chr11 80355513 80355690 -41488166 - L3 LINE CR1 -709 3780 3596 1 1198 212 297 13 13 chr11 80355857 80355932 -41487924 - ID SINE ID -149 75 1 1 1198 443 316 23 0 chr11 80355934 80356067 -41487789 - B1F SINE Alu -13 136 1 1 1198 1350 108 0 40 chr11 80356771 80356973 -41486883 + B2_Mm2 SINE B2 2 195 0 1 1198 629 206 68 8 chr11 80357014 80357146 -41486710 + B1_Mm SINE Alu 1 140 -7 1 1198 288 0 0 0 chr11 80357148 80357180 -41486676 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1198 1875 159 62 3 chr11 80358117 80358471 -41485385 + ORR1B1 LTR MaLR 20 394 0 1 1198 216 231 0 0 chr11 80358753 80358805 -41485051 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1198 1063 203 39 0 chr11 80358820 80359027 -41484829 - B3 SINE B2 -1 215 1 1 1198 771 229 0 0 chr11 80360414 80360554 -41483302 + B1_Mur3 SINE Alu 2 141 -8 1 1198 971 153 21 48 chr11 80360956 80361142 -41482714 - B2_Mm2 SINE B2 -14 181 1 1 1198 260 70 23 0 chr11 80361202 80361245 -41482611 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1198 389 275 11 0 chr11 80361292 80361383 -41482473 - B4A SINE B4 -18 274 183 1 1198 326 209 0 15 chr11 80361444 80361512 -41482344 - B4 SINE B4 -224 68 2 1 1198 428 276 65 8 chr11 80361931 80362076 -41481780 - L1M6 LINE L1 -4757 1739 1609 1 1198 474 49 0 0 chr11 80362100 80362161 -41481695 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1198 405 54 0 0 chr11 80362161 80362217 -41481639 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1198 1202 48 0 7 chr11 80362310 80362457 -41481399 - B1_Mus2 SINE Alu 0 147 2 1 1198 278 275 182 8 chr11 80362488 80362609 -41481247 - MER104 DNA Tc2 -1 180 39 1 1198 570 227 45 8 chr11 80362847 80362980 -41480876 + B3A SINE B2 1 138 -60 1 1198 269 259 202 39 chr11 80363261 80363494 -41480362 - L1M6 LINE L1 -5506 990 720 1 1198 351 298 0 31 chr11 80364337 80364434 -41479422 + PB1D10 SINE Alu 8 101 -16 1 1198 564 180 213 0 chr11 80364489 80364611 -41479245 + B1_Mur2 SINE Alu 1 148 -1 1 1198 534 82 0 0 chr11 80364973 80365058 -41478798 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1198 216 67 0 0 chr11 80365075 80365105 -41478751 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1 1198 236 240 93 0 chr11 80366274 80366349 -41477507 - MER103 DNA DNA -81 85 4 1 1198 403 259 166 40 chr11 80366904 80367181 -41476675 - L1MEc LINE L1 -5530 870 559 1 1198 377 216 103 41 chr11 80367383 80367528 -41476328 - L1MEc LINE L1 -6197 203 50 1 1198 263 257 31 155 chr11 80367554 80367585 -41476271 - ID_B1 SINE B4 0 224 185 1 1198 294 185 56 0 chr11 80367585 80367639 -41476217 - B1_Mus2 SINE Alu -84 63 7 1 1198 263 257 31 155 chr11 80367639 80367715 -41476141 - ID_B1 SINE B4 0 184 84 1 1198 439 229 76 32 chr11 80369084 80369269 -41474587 - MLT2B2 LTR ERVL -322 193 1 1 1198 674 176 43 14 chr11 80369323 80369461 -41474395 - B1_Mur4 SINE Alu -8 142 1 1 1198 303 28 0 0 chr11 80369474 80369510 -41474346 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1198 207 0 0 0 chr11 80369510 80369532 -41474324 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1198 369 235 23 12 chr11 80369662 80369748 -41474108 + PB1D9 SINE Alu 34 120 0 1 1198 207 0 0 0 chr11 80369950 80369973 -41473883 + (TTGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1198 1155 188 29 5 chr11 80370199 80370408 -41473448 - B3 SINE B2 -2 214 1 1 1198 964 268 143 16 chr11 80371245 80371791 -41472065 + L1MD LINE L1 3180 3794 -2352 1 1198 198 71 0 0 chr11 80371796 80371824 -41472032 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1198 699 305 108 78 chr11 80371858 80372488 -41471368 + L1MC LINE L1 4401 5049 -1097 1 1198 235 259 49 49 chr11 80372477 80372619 -41471237 + L1MD LINE L1 5323 5464 -778 1 1198 265 305 56 28 chr11 80372688 80372912 -41470944 + L1MD LINE L1 5663 5894 -285 1 1198 705 152 0 20 chr11 80373504 80373613 -41470243 + polypyrimidine Low_complexity Low_complexity 42 148 0 1 1198 222 37 0 0 chr11 80373613 80373640 -41470216 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1198 705 152 0 20 chr11 80373640 80373678 -41470178 + polypyrimidine Low_complexity Low_complexity 5 41 0 1 1198 382 200 12 0 chr11 80373678 80373758 -41470098 - ID4 SINE ID 0 83 3 1 1198 508 259 7 7 chr11 80373898 80374038 -41469818 - RSINE1 SINE B4 -25 140 1 1 1198 268 174 60 40 chr11 80374826 80374914 -41468942 - PB1D7 SINE Alu -54 95 3 1 1198 189 0 0 0 chr11 80375578 80375599 -41468257 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1198 605 252 49 0 chr11 80375619 80375762 -41468094 - B3A SINE B2 -46 152 3 1 1198 1196 56 0 0 chr11 80375769 80375913 -41467943 - B1_Mm SINE Alu -3 144 1 1 1198 831 211 137 0 chr11 80376064 80376254 -41467602 + B3 SINE B2 1 216 0 1 1198 865 291 80 41 chr11 80376254 80376745 -41467111 + L1MA4 LINE L1 5516 6025 -278 1 1198 359 263 0 0 chr11 80377397 80377473 -41466383 + ID4_ SINE ID 5 80 -3 1 1198 803 234 140 43 chr11 80377582 80378114 -41465742 - Lx8 LINE L1 -115 7358 6814 1 1198 254 309 20 41 chr11 80379527 80379625 -41464231 - MLT1A LTR MaLR -205 169 74 1 1198 506 262 34 40 chr11 80379740 80379915 -41463941 + MLT1G3 LTR MaLR 422 595 0 1 1198 1013 282 144 87 chr11 80379926 80380797 -41463059 + MLT1G3-int LTR MaLR 14 990 -499 1 1198 894 146 14 27 chr11 80381271 80381419 -41462437 - B1_Mur4 SINE Alu -3 147 2 1 1198 186 43 0 0 chr11 80381450 80381473 -41462383 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1198 291 227 0 0 chr11 80381664 80381730 -41462126 + PB1D10 SINE Alu 1 66 -51 1 1198 663 125 0 0 chr11 80381730 80381834 -41462022 + (GGA)n Simple_repeat Simple_repeat 3 106 0 1 1198 495 0 0 0 chr11 80381834 80381889 -41461967 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1198 440 282 0 8 chr11 80382141 80382259 -41461597 - B1_Mur1 SINE Alu -5 144 28 1 1198 326 263 211 0 chr11 80382298 80382393 -41461463 - RSINE1 SINE B4 -36 129 15 1 1198 2045 140 78 3 chr11 80382435 80382794 -41461062 + ORR1B1 LTR MaLR 1 386 -8 1 1198 244 290 14 28 chr11 80382816 80382887 -41460969 - tRNA-Ala-GCY_ tRNA tRNA -1 74 5 1 1198 1262 104 27 5 chr11 80382930 80383114 -41460742 + B2_Mm2 SINE B2 1 188 -7 1 1198 250 271 124 7 chr11 80383426 80383571 -41460285 - Charlie13a DNA Charlie -92 1422 1261 1 1198 277 276 168 22 chr11 80383609 80383794 -41460062 - Charlie13a DNA Charlie -944 570 359 1 1198 256 280 27 0 chr11 80384140 80384215 -41459641 - Charlie13a DNA Charlie -972 542 466 1 1198 267 329 106 35 chr11 80384297 80384467 -41459389 - Tigger15a DNA TcMar -442 273 92 1 1198 22 35 0 0 chr11 80384669 80384698 -41459158 + AT_rich Low_complexity Low_complexity 1 29 0 1 1198 1149 122 148 0 chr11 80385450 80385646 -41458210 + URR1A DNA MER1_type 2 226 0 1 1198 817 158 22 0 chr11 80385666 80385805 -41458051 + B1_Mur4 SINE Alu 2 143 -7 1 1198 252 0 0 0 chr11 80385805 80385833 -41458023 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1198 896 223 53 19 chr11 80385845 80386051 -41457805 + B3 SINE B2 4 216 0 1 1198 1183 183 10 0 chr11 80386084 80386292 -41457564 + B3 SINE B2 1 210 -6 1 1198 313 281 17 26 chr11 80387489 80387606 -41456250 - PB1D10 SINE Alu -1 116 1 1 1198 263 287 45 11 chr11 80387667 80387755 -41456101 + PB1D9 SINE Alu 7 97 -23 1 1198 370 224 34 36 chr11 80387840 80387986 -41455870 - MLT1A0 LTR MaLR -15 452 245 1 1198 257 305 48 12 chr11 80388062 80388145 -41455711 - MLT1A0 LTR MaLR -275 90 5 1 1198 450 0 0 0 chr11 80388166 80388216 -41455640 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1198 546 183 77 0 chr11 80388345 80388449 -41455407 + PB1D9 SINE Alu 2 113 -7 1 1198 571 111 0 0 chr11 80388560 80388641 -41455215 - B2_Mm2 SINE B2 -112 83 3 1 1198 223 274 16 0 chr11 80388812 80388874 -41454982 - MER5B DNA MER1_type -75 103 41 1 1198 234 214 129 0 chr11 80388881 80388951 -41454905 + ID4_ SINE ID 4 82 -1 1 1198 446 187 13 0 chr11 80390097 80390172 -41453684 - ID4 SINE ID -3 80 5 1 1198 564 56 0 0 chr11 80390373 80390445 -41453411 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1 1198 756 173 31 0 chr11 80390445 80390572 -41453284 - B1_Mus2 SINE Alu -14 133 3 1 1198 1998 231 42 17 chr11 80392822 80393346 -41450510 + L1MC3 LINE L1 5448 5984 -1801 1 1198 25 0 0 0 chr11 80393951 80393976 -41449880 + AT_rich Low_complexity Low_complexity 1 25 0 1 1198 401 259 8 41 chr11 80394039 80394160 -41449696 + PB1D10 SINE Alu 1 117 0 1 1198 214 356 40 0 chr11 80394693 80394794 -41449062 + L2a LINE L2 3049 3153 -273 1 1198 486 0 0 0 chr11 80394888 80394942 -41448914 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1198 184 268 11 128 chr11 80394964 80395058 -41448798 + L2a LINE L2 3298 3380 -7 1 1198 1247 115 124 10 chr11 80395615 80395817 -41448039 + URR1A DNA MER1_type 1 225 -1 1 1198 1447 81 16 0 chr11 80395845 80396030 -41447826 + B2_Mm2 SINE B2 2 189 -6 1 1198 296 322 38 53 chr11 80397070 80397105 -41446751 - B1F1 SINE Alu -7 142 14 1 1198 304 309 10 21 chr11 80397105 80397201 -41446655 - ID_B1 SINE B4 -35 189 95 1 1198 697 193 30 104 chr11 80397958 80398160 -41445696 + B3A SINE B2 8 194 -4 1 1198 267 103 246 0 chr11 80399214 80399340 -41444516 + (GGCTG)n Simple_repeat Simple_repeat 5 161 0 1 1198 766 263 59 52 chr11 80399341 80399630 -41444226 + B4A SINE B4 2 292 0 1 1198 326 93 37 0 chr11 80399630 80399684 -41444172 + (CATA)n Simple_repeat Simple_repeat 3 58 0 1 1198 938 268 46 18 chr11 80399766 80400047 -41443809 + B4 SINE B4 2 290 -2 1 1198 292 242 42 10 chr11 80400711 80400807 -41443049 + L1M4 LINE L1 5179 5277 -869 1 1198 1325 98 0 49 chr11 80400815 80401019 -41442837 + B2_Mm2 SINE B2 2 195 0 1 1198 807 208 30 6 chr11 80401382 80401586 -41442270 - B3A SINE B2 -6 210 1 1 1198 362 311 57 99 chr11 80403921 80404132 -41439724 + MER21B LTR ERV1 146 347 -516 1 1198 402 262 28 16 chr11 80404163 80404315 -41439541 - L1MEc LINE L1 -4044 2356 2204 1 1198 243 254 13 29 chr11 80404322 80404417 -41439439 - BC1_Mm scRNA scRNA -60 92 1 1 1198 354 304 26 46 chr11 80404514 80404666 -41439190 - RSINE1 SINE B4 -14 151 3 1 1198 227 286 58 32 chr11 80404671 80404859 -41438997 - L1MEc LINE L1 -5271 1129 937 1 1198 1581 53 16 0 chr11 80404953 80405142 -41438714 - B2_Mm2 SINE B2 -1 194 3 1 1198 637 195 75 27 chr11 80405341 80405521 -41438335 - B3A SINE B2 -9 186 1 1 1198 1272 73 0 180 chr11 80405540 80405773 -41438083 - B2_Mm2 SINE B2 -2 193 3 1 1198 454 275 28 21 chr11 80405930 80406071 -41437785 + ID_B1 SINE B4 82 223 -1 1 1198 1242 120 5 20 chr11 80406623 80406819 -41437037 + B2_Mm2 SINE B2 1 193 -2 1 1198 568 191 78 0 chr11 80406835 80406950 -41436906 + B1_Mm SINE Alu 1 124 -23 1 1198 920 49 0 0 chr11 80407505 80407627 -41436229 + B1_Mus1 SINE Alu 27 148 0 1 1198 644 291 144 45 chr11 80408215 80408723 -41435133 - L2 LINE L2 -337 3082 2525 1 1198 227 167 0 0 chr11 80408885 80408921 -41434935 + Charlie22a DNA MER1_type 1 36 -455 1 1198 189 0 0 0 chr11 80409744 80409765 -41434091 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1198 1344 98 0 35 chr11 80409828 80410030 -41433826 + B2_Mm2 SINE B2 1 195 0 1 1198 370 306 74 7 chr11 80410043 80410178 -41433678 + ID_B1 SINE B4 80 223 -1 1 1198 601 198 160 53 chr11 80410325 80410512 -41433344 + MER58C DNA MER1_type 1 207 -8 1 1198 933 177 0 3 chr11 80410562 80410887 -41432969 + GA-rich Low_complexity Low_complexity 1 323 0 1 1198 306 200 24 206 chr11 80410926 80411052 -41432804 + L2a LINE L2 3285 3426 0 1 1198 259 250 145 10 chr11 80411181 80411283 -41432573 + Lx8 LINE L1 5510 5622 -258 1 1198 500 235 50 109 chr11 80411315 80411390 -41432466 + L1MA5A LINE L1 5743 5801 -496 1 1198 351 0 0 0 chr11 80411390 80411429 -41432427 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1198 4466 242 101 39 chr11 80411429 80412790 -41431066 + Lx8 LINE L1 5767 7212 -261 1 1198 467 274 8 0 chr11 80412794 80412911 -41430945 + ID_B1 SINE B4 85 202 -22 1 1198 184 361 14 0 chr11 80412937 80413009 -41430847 - MIRb SINE MIR -146 122 50 1 1198 243 192 77 0 chr11 80413341 80413393 -41430463 - PB1D10 SINE Alu -8 109 54 1 1198 1248 48 0 0 chr11 80413591 80413736 -41430120 - B1_Mus2 SINE Alu 0 147 3 1 1198 495 267 45 45 chr11 80413842 80414042 -41429814 + MER2 DNA MER2_type 4 203 -142 1 1198 719 207 20 20 chr11 80414054 80414202 -41429654 + B1_Mur3 SINE Alu 2 149 0 1 1198 493 211 16 0 chr11 80414204 80414332 -41429524 + GA-rich Low_complexity Low_complexity 2 131 0 1 1198 263 365 10 0 chr11 80414335 80414431 -41429425 + MER2 DNA MER2_type 249 345 0 1 1198 180 308 0 0 chr11 80414580 80414632 -41429224 - MER5B DNA MER1_type -1 177 126 1 1198 577 158 0 0 chr11 80415459 80415560 -41428296 + B1_Mus2 SINE Alu 46 146 -1 1 1198 247 217 7 34 chr11 80417716 80417781 -41426075 - PB1D7 SINE Alu -82 67 1 1 1198 272 173 188 62 chr11 80417810 80417830 -41426026 + ID_B1 SINE B4 134 192 -32 1 1198 282 192 0 0 chr11 80417830 80417882 -41425974 + B1F SINE Alu 91 142 -7 1 1198 270 303 0 0 chr11 80418140 80418216 -41425640 - RLTR24 LTR ERV1 -453 76 1 1 1198 308 284 63 6 chr11 80418539 80418745 -41425111 + L2b LINE L2 2931 3156 -270 1 1198 976 150 0 0 chr11 80419942 80420089 -41423767 - B1_Mus1 SINE Alu 0 148 2 1 1198 22 0 0 0 chr11 80420693 80420715 -41423141 + AT_rich Low_complexity Low_complexity 1 22 0 1 1198 413 302 81 113 chr11 80420906 80421110 -41422746 + B4 SINE B4 2 202 -90 1 1198 198 0 0 0 chr11 80421110 80421132 -41422724 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1198 413 302 81 113 chr11 80421132 80421211 -41422645 + B4 SINE B4 203 275 -17 1 1198 351 0 0 0 chr11 80421232 80421271 -41422585 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1198 282 306 12 0 chr11 80422014 80422099 -41421757 - MER103 DNA DNA -15 151 66 1 1198 23 33 0 0 chr11 80422100 80422130 -41421726 + AT_rich Low_complexity Low_complexity 1 30 0 1 1198 300 237 165 0 chr11 80422176 80422273 -41421583 + MER34A LTR ERV1 1 113 -458 1 1198 1075 178 0 16 chr11 80422294 80422482 -41421374 + Lx5 LINE L1 6194 6378 -672 1 1198 1542 49 14 24 chr11 80422482 80422693 -41421163 + L1Md_F2 LINE L1 6373 6581 -1 1 1198 3364 200 27 6 chr11 80422688 80423353 -41420503 + Lx5 LINE L1 6364 7042 -8 1 1198 390 227 88 190 chr11 80423424 80423729 -41420127 + L1MC4 LINE L1 7769 8042 0 1 1198 252 0 0 0 chr11 80423811 80423839 -41420017 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1198 586 306 19 0 chr11 80423854 80424011 -41419845 + RSINE1 SINE B4 4 163 -2 1 1198 234 0 0 0 chr11 80424177 80424203 -41419653 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1198 830 36 0 0 chr11 80424203 80424315 -41419541 - B1_Mus1 SINE Alu 0 148 37 1 1198 367 293 79 13 chr11 80424380 80424532 -41419324 - MER96B DNA hAT -190 227 66 1 1198 457 245 157 10 chr11 80425878 80426009 -41417847 + L1MA4A LINE L1 5677 5830 -473 1 1198 6352 36 4 0 chr11 80426009 80426756 -41417100 - L1Md_T LINE L1 0 6582 5833 1 1198 457 245 157 10 chr11 80426756 80426822 -41417034 + L1MA4A LINE L1 5831 5902 -401 1 1198 306 0 0 0 chr11 80426837 80426871 -41416985 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1198 610 220 0 0 chr11 80427008 80427117 -41416739 - PB1D9 SINE Alu -6 114 6 1 1198 443 273 84 37 chr11 80427416 80427606 -41416250 - B4A SINE B4 -46 246 48 1 1198 432 284 0 0 chr11 80427646 80427755 -41416101 - PB1D10 SINE Alu -8 109 1 1 1198 22 0 0 0 chr11 80430322 80430344 -41413512 + AT_rich Low_complexity Low_complexity 1 22 0 1 1198 288 70 0 0 chr11 80430435 80430478 -41413378 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1198 702 85 0 28 chr11 80430487 80430596 -41413260 - B2_Mm2 SINE B2 -88 107 2 1 1198 38 53 0 13 chr11 80430626 80430681 -41413175 + AT_rich Low_complexity Low_complexity 1 55 0 1 1198 2978 18 36 0 chr11 80430681 80431015 -41412841 + ORR1A0 LTR MaLR 1 346 0 1 1198 38 53 0 13 chr11 80431015 80431036 -41412820 + AT_rich Low_complexity Low_complexity 1 21 0 1 1198 427 179 42 0 chr11 80431257 80431352 -41412504 + L1Md_F2 LINE L1 6483 6581 -1 1 1198 299 237 0 0 chr11 80431456 80431515 -41412341 - MLT1D LTR MaLR -446 59 1 1 1198 483 352 77 33 chr11 80432302 80432666 -41411190 + MLT1D LTR MaLR 108 487 -18 1 1198 182 306 119 9 chr11 80432773 80432882 -41410974 - MIRb SINE MIR -27 241 121 1 1198 565 221 150 0 chr11 80434546 80434673 -41409183 - B1_Mur2 SINE Alu 0 149 4 1 1198 23 33 0 0 chr11 80434673 80434703 -41409153 + AT_rich Low_complexity Low_complexity 1 30 0 1 1198 339 322 61 0 chr11 80435290 80435405 -41408451 - B4A SINE B4 -5 287 166 1 1198 237 253 0 96 chr11 80435609 80435692 -41408164 + ID2 SINE ID 5 79 -4 1 1198 733 135 79 0 chr11 80437443 80437569 -41406287 + B1_Mus1 SINE Alu 13 148 0 1 1198 204 40 0 0 chr11 80437639 80437664 -41406192 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1198 1475 54 32 0 chr11 80437666 80437852 -41406004 - B2_Mm2 SINE B2 -3 192 1 1 1198 282 29 0 0 chr11 80438320 80438355 -41405501 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 1 1198 270 359 28 56 chr11 80438447 80438626 -41405230 + Charlie1 DNA MER1_type 1 173 -2608 1 1198 783 136 20 60 chr11 80438626 80438775 -41405081 - B1_Mur4 SINE Alu -6 144 2 1 1198 270 359 28 56 chr11 80438775 80438846 -41405010 + Charlie1 DNA MER1_type 174 244 -2537 1 1198 582 178 92 15 chr11 80439008 80439139 -41404717 - B1F2 SINE Alu -8 141 1 1 1198 428 234 28 9 chr11 80439243 80439351 -41404505 + PB1D10 SINE Alu 7 116 -1 1 1198 203 202 10 96 chr11 80439351 80439455 -41404401 + A-rich Low_complexity Low_complexity 1 95 0 1 1198 1116 69 14 0 chr11 80440045 80440190 -41403666 + B1_Mus1 SINE Alu 2 148 0 1 1198 1663 203 67 30 chr11 80440220 80440581 -41403275 + ORR1D1 LTR MaLR 1 374 0 1 1198 305 349 106 0 chr11 80440603 80440735 -41403121 + B1F SINE Alu 3 148 -1 1 1198 1033 63 48 34 chr11 80440829 80440976 -41402880 - B1_Mur4 SINE Alu -1 149 1 1 1198 234 128 0 0 chr11 80441316 80441355 -41402501 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1198 1032 190 45 56 chr11 80442166 80442464 -41401392 + RLTR19-int LTR ERVK 144 531 -5606 1 1198 504 32 0 0 chr11 80442464 80442526 -41401330 + (CACCAT)n Simple_repeat Simple_repeat 4 65 0 1 1198 1032 202 66 42 chr11 80442526 80442613 -41401243 + RLTR19-int LTR ERVK 532 615 -5522 1 1198 376 296 178 12 chr11 80442921 80443174 -41400682 - Charlie25 DNA MER1_type -1375 1149 855 1 1198 278 336 48 0 chr11 80443197 80443301 -41400555 + MIR SINE MIR 35 143 -119 1 1198 990 140 207 0 chr11 80444224 80444403 -41399453 + B3 SINE B2 1 216 0 1 1198 257 247 91 0 chr11 80444575 80444652 -41399204 - RSINE1 SINE B4 0 165 82 1 1198 280 216 104 39 chr11 80444697 80444774 -41399082 - ID4_ SINE ID 0 83 2 1 1198 576 246 36 0 chr11 80444772 80444910 -41398946 - B1F1 SINE Alu 0 149 7 1 1198 180 0 0 0 chr11 80445002 80445022 -41398834 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1198 619 163 27 7 chr11 80445024 80445172 -41398684 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 1198 287 57 0 0 chr11 80445174 80445209 -41398647 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1198 331 255 69 0 chr11 80445902 80446004 -41397852 + PB1D10 SINE Alu 5 113 -4 1 1198 1020 96 7 52 chr11 80446399 80446553 -41397303 + B1_Mus1 SINE Alu 2 148 0 1 1198 432 0 0 0 chr11 80447012 80447060 -41396796 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1198 520 177 9 0 chr11 80447060 80447173 -41396683 - RCHARR1 DNA MER1_type -95 879 766 1 1198 394 231 142 19 chr11 80447213 80447319 -41396537 - PB1D9 SINE Alu 0 120 2 1 1198 1445 264 139 2 chr11 80447320 80447787 -41396069 - RCHARR1 DNA MER1_type -441 533 3 1 1198 825 283 72 55 chr11 80447962 80448325 -41395531 + RLTR14 LTR ERV1 12 380 -2 1 1198 260 274 69 23 chr11 80448341 80448472 -41395384 + L1M4 LINE L1 4934 5070 -1076 1 1198 2849 315 60 21 chr11 80448733 80449193 -41394663 + Lx8 LINE L1 6158 6619 -854 1 1198 1909 40 0 0 chr11 80449193 80449420 -41394436 - L1Md_A LINE L1 0 6582 6356 1 1198 2849 315 60 21 chr11 80449420 80450184 -41393672 + Lx8 LINE L1 6620 7429 -44 1 1198 195 186 0 0 chr11 80450184 80450227 -41393629 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1198 315 301 85 38 chr11 80450257 80450468 -41393388 + L1M4 LINE L1 5313 5533 -661 1 1198 497 262 107 0 chr11 80450593 80450715 -41393141 - B1F SINE Alu -9 140 6 1 1198 387 279 96 34 chr11 80451734 80451942 -41391914 + L1M5 LINE L1 3935 4155 -1991 1 1198 229 266 144 48 chr11 80452138 80452284 -41391572 - MLT1F2 LTR MaLR -370 190 31 1 1198 359 255 30 5 chr11 80452564 80452690 -41391166 - L1MA4 LINE L1 -348 5964 5833 1 1198 413 163 109 0 chr11 80452834 80452926 -41390930 - ORR1C2 LTR MaLR -282 102 1 1 1198 257 136 0 0 chr11 80452949 80452993 -41390863 - B3A SINE B2 -154 44 1 1 1198 180 365 18 53 chr11 80453389 80453502 -41390354 - MIRm SINE MIR -117 159 51 1 1198 575 284 55 0 chr11 80454851 80455034 -41388822 - MLT1D LTR MaLR 0 505 313 1 1198 327 315 119 36 chr11 80455034 80455202 -41388654 + MTEa LTR MaLR 1 182 -197 1 1198 536 342 94 50 chr11 80455633 80456092 -41387764 + MER21B LTR ERV1 260 738 -125 1 1198 365 142 181 12 chr11 80456202 80456301 -41387555 + MLT1H LTR MaLR 43 173 -376 1 1198 340 42 0 0 chr11 80456527 80456575 -41387281 - L1Md_T LINE L1 0 6582 6535 1 1198 808 188 0 0 chr11 80456652 80456790 -41387066 + B1_Mur1 SINE Alu 4 141 -8 1 1198 531 90 0 0 chr11 80456790 80456868 -41386988 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1198 23 33 0 0 chr11 80456900 80456930 -41386926 + AT_rich Low_complexity Low_complexity 1 30 0 1 1198 658 254 63 137 chr11 80457255 80457620 -41386236 + MTEa LTR MaLR 13 350 -29 1 1198 432 0 0 0 chr11 80457632 80457680 -41386176 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1198 4903 60 6 22 chr11 80457860 80458496 -41385360 + L1_Mus2 LINE L1 5941 6566 0 1 1198 267 286 88 0 chr11 80458531 80458622 -41385234 + L1M5 LINE L1 2839 2937 -3209 1 1198 36164 69 3 13 chr11 80459186 80465196 -41378660 - L1Md_F2 LINE L1 -12 6570 620 1 1198 236 146 42 0 chr11 80465732 80465780 -41378076 - L1MEd LINE L1 -4877 1619 1570 1 1198 320 319 0 9 chr11 80465796 80465910 -41377946 + ID_B1 SINE B4 82 194 -30 1 1198 24 53 0 0 chr11 80466176 80466214 -41377642 + AT_rich Low_complexity Low_complexity 1 38 0 1 1198 803 215 119 8 chr11 80466342 80466586 -41377270 - B4A SINE B4 -18 274 4 1 1198 1118 214 9 5 chr11 80466710 80466921 -41376935 - B3 SINE B2 0 216 5 1 1198 316 385 62 4 chr11 80466962 80467189 -41376667 - L1MEd LINE L1 -5425 965 726 1 1198 24 0 0 0 chr11 80468022 80468046 -41375810 + AT_rich Low_complexity Low_complexity 1 24 0 1 1198 286 250 60 0 chr11 80468544 80468628 -41375228 - B1F SINE Alu -9 140 52 1 1198 252 0 0 0 chr11 80469350 80469378 -41374478 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1198 362 22 0 0 chr11 80469380 80469426 -41374430 - B1_Mm SINE Alu -15 132 87 1 1198 2451 200 56 128 chr11 80469683 80470634 -41373222 + RMER17B LTR ERVK 1 882 -76 1 1198 3169 73 5 0 chr11 80471340 80471738 -41372118 - MTB LTR MaLR 0 400 1 1 1198 414 0 0 0 chr11 80471752 80471798 -41372058 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1198 423 0 0 0 chr11 80472493 80472540 -41371316 + (CCA)n Simple_repeat Simple_repeat 3 49 0 1 1198 515 85 0 0 chr11 80472661 80472743 -41371113 + ORR1A2 LTR MaLR 1 82 -245 1 1198 1155 66 44 108 chr11 80473045 80473248 -41370608 - B2_Mm2 SINE B2 -5 190 1 1 1198 387 106 0 0 chr11 80473254 80473320 -41370536 + (TTTTG)n Simple_repeat Simple_repeat 3 68 0 1 1198 374 197 0 0 chr11 80473349 80473415 -41370441 - B3A SINE B2 -104 94 29 1 1198 317 353 0 0 chr11 80474492 80474611 -41369245 + L2a LINE L2 1865 1983 -1436 1 1198 450 253 89 147 chr11 80474709 80474899 -41368957 - B3A SINE B2 0 198 17 1 1198 201 147 0 0 chr11 80474909 80474943 -41368913 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1198 276 326 64 0 chr11 80475093 80475234 -41368622 + L2a LINE L2 2274 2423 -996 1 1198 358 296 151 29 chr11 80475364 80475822 -41368034 + L2a LINE L2 2707 3222 -204 1 1198 1138 77 0 0 chr11 80477550 80477693 -41366163 - B1_Mus1 SINE Alu -5 143 1 1 1199 232 320 143 32 chr11 80479180 80479244 -41364612 - ID_B1 SINE B4 -78 146 7 1 1199 295 177 210 0 chr11 80479244 80479306 -41364550 - ID4_ SINE ID -2 81 7 1 1199 465 263 83 33 chr11 80481252 80481433 -41362423 - B3A SINE B2 -3 195 6 1 1199 23 0 0 0 chr11 80481648 80481671 -41362185 + AT_rich Low_complexity Low_complexity 1 23 0 1 1199 751 263 87 131 chr11 80481926 80482123 -41361733 + B4A SINE B4 8 224 -68 1 1199 636 267 80 0 chr11 80482123 80482273 -41361583 + RSINE1 SINE B4 4 165 0 1 1199 751 263 87 131 chr11 80482273 80482373 -41361483 + B4A SINE B4 225 292 0 1 1199 254 240 28 49 chr11 80482643 80482763 -41361093 + PB1D7 SINE Alu 1 125 -2 1 1199 385 196 469 0 chr11 80482796 80482939 -41360917 + B3 SINE B2 2 211 -5 1 1199 426 255 106 19 chr11 80484771 80484931 -41358925 + MER20 DNA MER1_type 8 181 -38 1 1199 779 211 17 33 chr11 80485530 80485711 -41358145 + B3A SINE B2 1 178 -20 1 1199 338 257 30 101 chr11 80485854 80486053 -41357803 + L1MC5 LINE L1 7301 7485 -476 1 1199 207 244 0 0 chr11 80486061 80486106 -41357750 + GA-rich Low_complexity Low_complexity 1 45 0 1 1199 362 74 19 0 chr11 80486124 80486178 -41357678 + (CAAT)n Simple_repeat Simple_repeat 4 58 0 1 1199 189 0 0 0 chr11 80486719 80486740 -41357116 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1199 569 248 0 0 chr11 80486740 80486857 -41356999 - PB1D10 SINE Alu 0 117 1 1 1199 22 0 0 0 chr11 80487241 80487263 -41356593 + AT_rich Low_complexity Low_complexity 1 22 0 1 1199 330 267 58 15 chr11 80487374 80487511 -41356345 + ID_B1 SINE B4 82 224 0 1 1199 207 0 0 0 chr11 80488256 80488279 -41355577 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1199 626 246 88 0 chr11 80488963 80489134 -41354722 - B3A SINE B2 -12 186 1 1 1199 250 278 14 0 chr11 80491185 80491257 -41352599 + MIRb SINE MIR 110 182 -86 1 1199 989 224 10 5 chr11 80491632 80491834 -41352022 - B3 SINE B2 -12 204 2 1 1199 23 0 0 0 chr11 80492284 80492307 -41351549 + AT_rich Low_complexity Low_complexity 1 23 0 1 1199 873 118 89 0 chr11 80492867 80493002 -41350854 + B1_Mus1 SINE Alu 2 148 0 1 1199 909 110 0 0 chr11 80493005 80493150 -41350706 + (GA)n Simple_repeat Simple_repeat 2 146 0 1 1199 971 271 96 60 chr11 80493647 80494044 -41349812 + MT2A LTR ERVL 1 411 -122 1 1199 423 275 129 34 chr11 80495072 80495219 -41348637 - B4 SINE B4 -123 169 9 1 1199 23 0 0 0 chr11 80495942 80495965 -41347891 + AT_rich Low_complexity Low_complexity 1 23 0 1 1199 396 155 0 0 chr11 80496064 80496135 -41347721 + BC1_Mm scRNA scRNA 10 80 -72 1 1199 187 87 43 21 chr11 80496154 80496201 -41347655 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 1 1199 21 36 0 0 chr11 80498814 80498842 -41345014 + AT_rich Low_complexity Low_complexity 1 28 0 1 1199 1179 55 0 7 chr11 80498851 80498998 -41344858 + B1_Mus2 SINE Alu 2 147 0 1 1199 225 0 0 0 chr11 80499004 80499029 -41344827 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1199 201 162 27 0 chr11 80499543 80499580 -41344276 + C-rich Low_complexity Low_complexity 3 40 0 1 1199 763 141 0 0 chr11 80499722 80499843 -41344013 - B2_Mm2 SINE B2 -72 123 3 1 1199 967 241 139 31 chr11 80500537 80500854 -41343002 + Lx8 LINE L1 6309 6659 -814 1 1199 27002 65 3 4 chr11 80500852 80504337 -41339519 + L1Md_F2 LINE L1 2106 5586 -297 2 1199 7759 65 2 13 chr11 80504337 80505341 -41338515 + L1Md_F2 LINE L1 5587 6579 -3 2 1199 267 348 31 19 chr11 80505518 80505679 -41338177 + MIRc SINE MIR 101 263 -5 3 1199 331 273 35 82 chr11 80506095 80506208 -41337648 - PB1 SINE Alu -2 125 8 4 1199 183 80 0 0 chr11 80506778 80506803 -41337053 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 5 1199 1226 48 0 0 chr11 80506810 80506956 -41336900 - B1_Mus2 SINE Alu -1 146 1 6 1199 368 206 156 42 chr11 80506957 80507053 -41336803 + B1F SINE Alu 26 132 -17 7 1199 436 245 20 10 chr11 80507102 80507201 -41336655 + B1F SINE Alu 2 101 -48 8 1199 306 319 67 0 chr11 80508635 80508770 -41335086 + MIRb SINE MIR 27 170 -98 9 1199 453 237 34 0 chr11 80508863 80508981 -41334875 - ID_B1 SINE B4 0 224 103 1 1199 612 275 7 7 chr11 80509164 80509307 -41334549 + B3A SINE B2 1 143 -55 1 1199 377 271 94 0 chr11 80509718 80509814 -41334042 + PB1D10 SINE Alu 6 110 -7 1 1199 272 268 165 0 chr11 80510666 80510793 -41333063 + B1_Mus1 SINE Alu 1 148 0 1 1199 270 247 18 142 chr11 80511505 80511618 -41332238 - B1F SINE Alu -50 99 1 1 1199 324 344 43 0 chr11 80512037 80512223 -41331633 + L2 LINE L2 2061 2254 -1165 1 1199 359 254 95 95 chr11 80512386 80512534 -41331322 + B1F2 SINE Alu 2 149 0 1 1199 450 254 117 117 chr11 80513744 80514060 -41329796 + MLT1B LTR MaLR 11 326 -64 1 1199 1277 261 85 17 chr11 80514419 80514879 -41328977 + ERVL-int LTR ERVL 5110 5600 -157 1 1199 366 310 81 12 chr11 80514880 80515040 -41328816 + MTE-int LTR MaLR 1157 1327 -253 1 1199 2402 260 45 8 chr11 80515077 80515985 -41327871 + Lx5 LINE L1 6168 7031 -19 2 1199 243 299 81 34 chr11 80516217 80516366 -41327490 + L1MC4 LINE L1 6767 6922 -1120 2 1199 484 299 27 11 chr11 80516552 80516738 -41327118 + L1MC4 LINE L1 7213 7401 -641 2 1199 914 272 185 46 chr11 80516748 80517229 -41326627 + MLT2B4 LTR ERVL 1 548 -8 2 1199 358 313 154 18 chr11 80517242 80517463 -41326393 + ERVL-B4-int LTR ERVL 2 252 -5462 2 1199 357 272 154 55 chr11 80517873 80518184 -41325672 + L1MC4 LINE L1 7687 8028 -14 2 1199 223 297 50 81 chr11 80518491 80518590 -41325266 - RSINE1 SINE B4 -66 99 4 2 1199 183 42 0 0 chr11 80518601 80518625 -41325231 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1199 403 212 8 48 chr11 80520232 80520356 -41323500 + ID_B1 SINE B4 105 223 -1 2 1199 243 183 155 0 chr11 80520952 80521023 -41322833 + B4A SINE B4 106 187 -105 2 1199 1065 298 182 22 chr11 80521047 80521551 -41322305 + Lx8 LINE L1 6889 7473 0 2 1199 238 271 114 41 chr11 80522979 80523102 -41320754 + L1MC4a LINE L1 6458 6589 -1453 2 1199 855 264 81 32 chr11 80523153 80523438 -41320418 - MER2B DNA MER2_type -35 301 3 2 1199 253 333 48 0 chr11 80523460 80523544 -41320312 + L1MC4a LINE L1 6678 6765 -1117 2 1199 250 372 41 20 chr11 80524647 80524842 -41319014 - MER102b DNA MER1_type -16 325 127 3 1199 511 278 58 16 chr11 80525317 80525507 -41318349 + B3A SINE B2 1 198 0 3 1199 493 311 63 36 chr11 80525937 80526270 -41317586 + Charlie10 DNA MER1_type 94 435 -2387 3 1199 330 345 26 70 chr11 80526406 80526562 -41317294 + MLT1A0 LTR MaLR 179 327 -38 3 1199 1153 51 0 0 chr11 80526562 80526699 -41317157 + B1_Mm SINE Alu 1 137 -10 3 1199 243 0 0 0 chr11 80526699 80526726 -41317130 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1199 432 0 0 0 chr11 80526763 80526811 -41317045 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1199 267 329 0 25 chr11 80526811 80526892 -41316964 - RSINE1 SINE B4 -4 161 83 3 1199 410 275 20 86 chr11 80526957 80527108 -41316748 - B4 SINE B4 -151 141 1 3 1199 464 189 32 0 chr11 80527204 80527299 -41316557 - B4A SINE B4 -194 98 1 3 1199 846 170 20 0 chr11 80527717 80527864 -41315992 - B1_Mur4 SINE Alu 0 150 1 4 1199 293 336 89 42 chr11 80530292 80530739 -41313117 - L2c LINE L2 0 3387 2920 4 1199 320 278 0 0 chr11 80530810 80530882 -41312974 + ID_B1 SINE B4 117 188 -36 4 1199 2368 140 49 57 chr11 80530969 80531300 -41312556 + RMER4A LTR ERVK 1 331 -135 4 1199 205 89 44 0 chr11 80531300 80531345 -41312511 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 1199 2368 140 49 57 chr11 80531345 80531483 -41312373 + RMER4A LTR ERVK 332 466 0 4 1199 950 45 105 0 chr11 80532235 80532424 -41311432 - L1Md_F3 LINE L1 0 6584 6424 4 1199 469 318 46 25 chr11 80532433 80532630 -41311226 - MLT1J1 LTR MaLR -51 393 193 4 1199 357 299 152 67 chr11 80533240 80533509 -41310347 + B4 SINE B4 1 292 0 4 1199 1261 34 0 0 chr11 80533530 80533677 -41310179 - B1_Mus2 SINE Alu 0 147 1 4 1199 897 25 0 17 chr11 80533759 80533879 -41309977 + L1Md_F2 LINE L1 6442 6559 -23 4 1199 270 0 0 0 chr11 80533879 80533909 -41309947 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1199 25 0 0 0 chr11 80534083 80534108 -41309748 + AT_rich Low_complexity Low_complexity 1 25 0 5 1199 2578 71 0 0 chr11 80534721 80535061 -41308795 - L1_Mm LINE L1 -1593 4290 3951 5 1199 8355 49 8 4 chr11 80535064 80536420 -41307436 + L1_Mus1 LINE L1 5205 6566 -1 5 1199 1558 243 165 19 chr11 80538936 80539189 -41304667 + L1MA7 LINE L1 5494 5786 -505 5 1199 411 21 0 0 chr11 80539189 80539237 -41304619 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1199 1558 240 169 18 chr11 80539237 80539663 -41304193 + L1MA7 LINE L1 5787 6280 -11 5 1199 26 30 0 0 chr11 80539813 80539846 -41304010 + AT_rich Low_complexity Low_complexity 1 33 0 5 1199 199 157 39 0 chr11 80540202 80540253 -41303603 + GA-rich Low_complexity Low_complexity 1 53 0 5 1199 334 332 67 102 chr11 80540419 80540674 -41303182 + MLT1J LTR MaLR 216 461 -51 5 1199 5258 47 0 2 chr11 80541663 80542298 -41301558 - L1_Mus1 LINE L1 0 6567 5934 5 1199 3494 20 8 0 chr11 80542309 80542709 -41301147 + L1_Mus1 LINE L1 5588 5990 -577 6 1199 583 145 103 0 chr11 80543836 80543953 -41299903 + B1_Mus2 SINE Alu 13 141 -6 6 1199 678 233 0 0 chr11 80543969 80544102 -41299754 + B3A SINE B2 25 157 -41 6 1199 263 113 19 0 chr11 80544103 80544156 -41299700 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1199 320 188 32 0 chr11 80545000 80545088 -41298768 - PB1D9 SINE Alu 0 120 23 6 1199 1791 263 51 18 chr11 80545280 80545833 -41298023 + L1MB4 LINE L1 5542 6112 -68 6 1199 1187 74 0 0 chr11 80545907 80546055 -41297801 - B1_Mus1 SINE Alu 0 148 1 6 1199 456 225 90 23 chr11 80546074 80546251 -41297605 + Lx9 LINE L1 7443 7631 -13 6 1199 22 0 0 0 chr11 80546294 80546316 -41297540 + AT_rich Low_complexity Low_complexity 1 22 0 6 1199 761 255 75 19 chr11 80546360 80546572 -41297284 + ID_B1 SINE B4 1 224 0 6 1199 553 240 8 16 chr11 80546714 80546841 -41297015 + B3 SINE B2 86 211 -5 7 1199 21 0 0 0 chr11 80547307 80547328 -41296528 + AT_rich Low_complexity Low_complexity 1 21 0 7 1199 613 227 106 133 chr11 80547893 80548345 -41295511 - RMER10A LTR ERVL -2 440 1 7 1199 315 278 42 25 chr11 80548361 80548479 -41295377 - MIR SINE MIR -108 154 35 7 1199 368 267 19 5 chr11 80549035 80549151 -41294705 + PB1D10 SINE Alu 2 114 -3 7 1199 338 224 44 53 chr11 80549634 80549747 -41294109 + ID_B1 SINE B4 111 222 -2 7 1199 267 258 14 43 chr11 80549759 80549828 -41294028 + ID4 SINE ID 15 81 -2 7 1199 1270 96 11 0 chr11 80549859 80550036 -41293820 + B2_Mm1t SINE B2 1 179 -14 7 1199 653 249 52 0 chr11 80550290 80550463 -41293393 + MTE2b LTR MaLR 2 183 -196 7 1199 274 122 0 0 chr11 80550545 80550586 -41293270 + MTE2b LTR MaLR 169 209 -170 7 1199 10271 18 0 0 chr11 80550601 80551763 -41292093 + L1Md_A LINE L1 4423 5584 -299 7 1199 8715 26 1 0 chr11 80551765 80552759 -41291097 + L1Md_A LINE L1 5587 6581 -1 7 1199 1049 172 50 10 chr11 80552770 80552970 -41290886 - B3 SINE B2 -7 209 2 8 1199 626 230 67 0 chr11 80552973 80553138 -41290718 + MTE2b LTR MaLR 204 379 0 7 1199 2461 72 45 6 chr11 80553594 80553927 -41289929 - L1Md_F2 LINE L1 -12 6570 6225 8 1199 4432 56 7 0 chr11 80553927 80554482 -41289374 + L1Md_F2 LINE L1 5026 5584 -299 8 1199 7814 43 34 3 chr11 80554484 80555445 -41288411 + L1Md_F2 LINE L1 5587 6577 -5 8 1199 576 162 103 0 chr11 80555861 80555978 -41287878 - B1_Mur3 SINE Alu -20 129 1 8 1199 237 225 105 98 chr11 80555978 80556009 -41287847 - MT2B LTR ERVL -439 162 131 8 1199 190 204 56 0 chr11 80556026 80556080 -41287776 + L2 LINE L2 2628 2684 -735 8 1199 1010 234 54 21 chr11 80556163 80556443 -41287413 - B4A SINE B4 -2 290 2 8 1199 280 271 37 18 chr11 80556463 80556572 -41287284 + L2 LINE L2 2742 2852 -567 8 1199 351 65 0 0 chr11 80557656 80557702 -41286154 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1199 889 149 0 26 chr11 80559790 80559942 -41283914 + B1_Mur3 SINE Alu 2 149 0 8 1199 309 164 0 0 chr11 80559952 80560025 -41283831 + A-rich Low_complexity Low_complexity 1 73 0 8 1199 278 180 16 0 chr11 80560024 80560085 -41283771 + G-rich Low_complexity Low_complexity 5 66 0 9 1199 756 0 0 0 chr11 80561975 80562059 -41281797 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 9 1199 1270 240 118 8 chr11 80562312 80562677 -41281179 + MTD LTR MaLR 1 405 -14 9 1199 332 312 10 0 chr11 80562862 80562958 -41280898 + PB1D7 SINE Alu 7 103 -17 9 1199 22 0 0 0 chr11 80562958 80562980 -41280876 + AT_rich Low_complexity Low_complexity 1 22 0 9 1199 378 0 0 0 chr11 80563007 80563049 -41280807 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1199 716 184 27 82 chr11 80563249 80563433 -41280423 + B2_Mm2 SINE B2 19 192 -3 9 1199 576 262 112 5 chr11 80563440 80563628 -41280228 - B3 SINE B2 -8 208 1 9 1199 229 195 0 0 chr11 80563628 80563669 -41280187 - B3A SINE B2 -156 42 2 9 1199 24 53 0 0 chr11 80563847 80563885 -41279971 + AT_rich Low_complexity Low_complexity 1 38 0 9 1199 1116 247 118 0 chr11 80563923 80564219 -41279637 + MTD LTR MaLR 1 331 -88 1 1199 225 292 103 10 chr11 80564290 80564387 -41279469 - PB1D10 SINE Alu -10 107 2 1 1199 555 272 91 17 chr11 80565106 80565282 -41278574 - MER3 DNA MER1_type 0 209 21 1 1199 467 93 80 0 chr11 80566455 80566530 -41277326 - B1_Mus1 SINE Alu -66 82 2 1 1199 301 135 84 52 chr11 80566530 80566548 -41277308 - B4 SINE B4 -63 161 69 1 1199 231 286 14 0 chr11 80567062 80567132 -41276724 + L1MC4 LINE L1 7815 7885 -157 1 1199 701 144 0 9 chr11 80568345 80568457 -41275399 + B1_Mur4 SINE Alu 35 145 -5 1 1199 2484 149 86 58 chr11 80568609 80569122 -41274734 + RLTR11A2 LTR ERVK 1 527 0 1 1199 477 207 229 0 chr11 80569302 80569442 -41274414 + MTEa LTR MaLR 2 173 -206 1 1199 972 175 198 0 chr11 80570539 80570716 -41273140 + B3 SINE B2 1 212 -4 1 1199 1592 180 31 57 chr11 80570729 80570826 -41273030 + MTC LTR MaLR 1 103 -318 1 1199 906 134 42 7 chr11 80570826 80570969 -41272887 - B1_Mur4 SINE Alu 0 150 3 1 1199 1592 180 31 57 chr11 80570969 80571260 -41272596 + MTC LTR MaLR 104 378 -43 1 1199 192 250 172 75 chr11 80571851 80571985 -41271871 + L2b LINE L2 3098 3244 -131 1 1199 1328 166 9 5 chr11 80572064 80572288 -41271568 + URR1B DNA MER1_type 1 225 0 1 1199 317 110 12 35 chr11 80573313 80573398 -41270458 + (CCA)n Simple_repeat Simple_repeat 2 84 0 1 1199 311 304 139 0 chr11 80573778 80573979 -41269877 - L1ME3B LINE L1 -291 5949 5721 1 1199 185 294 39 0 chr11 80575356 80575407 -41268449 + MIRb SINE MIR 31 83 -185 1 1199 507 271 7 15 chr11 80575578 80575713 -41268143 + MER44D DNA MER2_type 1 134 -571 1 1199 233 217 100 0 chr11 80575716 80575776 -41268080 - Tigger7 DNA MER2_type -2184 307 242 1 1199 183 42 0 0 chr11 80576029 80576053 -41267803 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1199 216 0 0 0 chr11 80576638 80576662 -41267194 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1199 1076 68 0 26 chr11 80576662 80576804 -41267052 - B1_Mus1 SINE Alu -9 139 2 1 1199 369 0 0 0 chr11 80578141 80578182 -41265674 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 1 1199 866 189 0 6 chr11 80578182 80578363 -41265493 + GA-rich Low_complexity Low_complexity 1 180 0 1 1199 267 152 0 0 chr11 80578376 80578422 -41265434 + GA-rich Low_complexity Low_complexity 2 47 0 1 1199 831 198 101 44 chr11 80578547 80578774 -41265082 - Lx8 LINE L1 -2 7471 7232 1 1199 210 273 0 18 chr11 80578854 80578910 -41264946 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 1 1199 1186 117 22 22 chr11 80578959 80579143 -41264713 + B2_Mm2 SINE B2 1 184 -11 1 1199 379 74 14 18 chr11 80579171 80579237 -41264619 + B2_Mm2 SINE B2 46 116 -82 1 1199 189 0 0 0 chr11 80579252 80579273 -41264583 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1199 33 0 0 0 chr11 80579274 80579307 -41264549 + AT_rich Low_complexity Low_complexity 1 33 0 1 1199 399 299 89 12 chr11 80579315 80579484 -41264372 - B4 SINE B4 -103 189 8 1 1199 195 129 0 0 chr11 80579493 80579524 -41264332 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1199 488 160 130 0 chr11 80579572 80579672 -41264184 + B1_Mus2 SINE Alu 3 115 -32 1 1199 351 0 0 0 chr11 80580713 80580752 -41263104 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1199 231 281 36 117 chr11 80580768 80580796 -41263060 + MT2B LTR ERVL 135 226 -375 1 1199 403 235 20 30 chr11 80580796 80580897 -41262959 + PB1D9 SINE Alu 1 100 -20 1 1199 471 35 0 0 chr11 80581088 80581145 -41262711 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1199 360 274 39 0 chr11 80582676 80582778 -41261078 - B1F SINE Alu -42 107 2 1 1199 267 169 169 0 chr11 80585357 80585416 -41258440 - ID4_ SINE ID -7 76 8 1 1199 361 264 53 15 chr11 80585546 80585677 -41258179 - B1F SINE Alu -9 140 5 1 1199 264 309 31 47 chr11 80585812 80585941 -41257915 + Arthur1A DNA Tip100 50 176 -1 1 1199 504 0 0 0 chr11 80585990 80586046 -41257810 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 1 1199 267 31 0 0 chr11 80586046 80586078 -41257778 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 1 1199 198 391 50 31 chr11 80586178 80586339 -41257517 - L2c LINE L2 -188 3199 3036 1 1199 283 233 122 0 chr11 80586371 80586461 -41257395 + MER20 DNA MER1_type 98 198 -21 1 1199 407 187 13 13 chr11 80586507 80586583 -41257273 + ID4 SINE ID 5 80 -3 1 1199 333 0 0 0 chr11 80586877 80586914 -41256942 + (CAG)n Simple_repeat Simple_repeat 2 38 0 1 1199 823 192 77 10 chr11 80587321 80587516 -41256340 + B4 SINE B4 1 208 -84 1 1199 290 261 43 0 chr11 80587694 80587763 -41256093 - ID4_ SINE ID -10 73 2 1 1199 327 261 4 12 chr11 80587828 80587917 -41255939 - PB1D10 SINE Alu -54 93 3 1 1199 304 322 67 8 chr11 80588635 80588662 -41255194 + B4 SINE B4 62 187 -105 1 1199 417 217 43 0 chr11 80588662 80588754 -41255102 + B1F1 SINE Alu 3 98 -51 1 1199 1485 78 0 30 chr11 80589497 80589696 -41254160 + B2_Mm2 SINE B2 2 194 -1 1 1199 461 235 98 17 chr11 80590902 80591075 -41252781 + MER2 DNA MER2_type 39 225 -120 1 1199 198 103 0 0 chr11 80591150 80591179 -41252677 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1199 640 244 47 47 chr11 80591878 80592050 -41251806 + ID_B1 SINE B4 2 173 -51 1 1199 213 155 0 49 chr11 80592687 80592748 -41251108 + A-rich Low_complexity Low_complexity 3 60 0 1 1199 183 42 0 0 chr11 80593364 80593388 -41250468 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1199 190 95 23 23 chr11 80593544 80593587 -41250269 + (CCCCG)n Simple_repeat Simple_repeat 5 47 0 1 1199 186 131 149 21 chr11 80593989 80594036 -41249820 - MIR SINE MIR -155 107 55 1 1199 805 212 74 25 chr11 80594406 80594609 -41249247 + B3 SINE B2 4 216 0 1 1199 1229 119 11 0 chr11 80594635 80594812 -41249044 + B2_Mm1t SINE B2 1 179 -14 1 1199 403 76 321 62 chr11 80594878 80594990 -41248866 + B2_Mm2 SINE B2 47 187 -8 1 1199 408 40 0 0 chr11 80595633 80595683 -41248173 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1199 1196 50 0 0 chr11 80596282 80596423 -41247433 + B1_Mus2 SINE Alu 1 141 -6 1 1199 564 115 0 0 chr11 80596423 80596527 -41247329 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 1199 518 315 96 62 chr11 80596572 80597024 -41246832 + L1MC4a LINE L1 7358 7846 -196 1 1199 336 102 0 0 chr11 80597342 80597391 -41246465 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1199 341 236 50 76 chr11 80597668 80597770 -41246086 - PB1D10 SINE Alu -1 116 17 1 1199 1861 198 60 8 chr11 80597770 80598168 -41245688 + MTD LTR MaLR 1 419 0 1 1199 341 236 50 76 chr11 80598168 80598184 -41245672 - PB1D10 SINE Alu -101 16 1 1 1199 2487 112 48 27 chr11 80598230 80598642 -41245214 + MTC LTR MaLR 1 421 0 1 1199 183 80 0 0 chr11 80598746 80598771 -41245085 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1199 2100 130 38 3 chr11 80598872 80599219 -41244637 + ORR1B2 LTR MaLR 1 359 -8 1 1199 211 324 0 14 chr11 80599657 80599729 -41244127 - ID4 SINE ID -11 72 2 1 1199 303 295 22 0 chr11 80600158 80600263 -41243593 - B1F SINE Alu -3 124 12 1 1199 501 282 121 55 chr11 80601020 80601309 -41242547 + MER21B LTR ERV1 526 833 -30 1 1199 1079 230 50 14 chr11 80601487 80601765 -41242091 + B4A SINE B4 1 288 -4 1 1199 200 300 0 0 chr11 80602006 80602066 -41241790 - L3 LINE CR1 -27 4462 4403 1 1199 552 242 0 0 chr11 80602435 80602555 -41241301 - ID_B1 SINE B4 -2 222 103 1 1199 265 313 74 30 chr11 80602555 80602570 -41241286 - B1_Mur4 SINE Alu -1 149 9 1 1199 361 174 11 85 chr11 80603181 80603275 -41240581 - B3 SINE B2 -5 211 125 1 1199 851 295 104 0 chr11 80603804 80604045 -41239811 + B4A SINE B4 25 290 -2 1 1199 284 0 0 27 chr11 80604403 80604440 -41239416 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1199 287 136 0 0 chr11 80604444 80604488 -41239368 - B1_Mus2 SINE Alu -5 142 99 1 1199 235 184 0 20 chr11 80604472 80604522 -41239334 - B1_Mur4 SINE Alu -97 53 5 1 1199 352 258 358 12 chr11 80604524 80604689 -41239167 - ID_B1 SINE B4 -1 223 2 1 1199 189 0 0 0 chr11 80604705 80604726 -41239130 + (TGG)n Simple_repeat Simple_repeat 2 22 0 1 1199 311 272 12 0 chr11 80604741 80604822 -41239034 - MER2 DNA MER2_type -55 290 209 1 1199 639 319 28 19 chr11 80604836 80605050 -41238806 - B3 SINE B2 0 216 1 1 1199 464 266 56 7 chr11 80605050 80605191 -41238665 - MER2 DNA MER2_type -122 223 76 1 1199 529 256 32 32 chr11 80605323 80605509 -41238347 + MIRb SINE MIR 68 253 -15 1 1199 211 235 39 0 chr11 80606144 80606195 -41237661 + ID4_ SINE ID 28 80 -3 1 1199 579 155 202 0 chr11 80606153 80606282 -41237574 + ID_B1 SINE B4 39 193 -31 1 1199 558 0 0 0 chr11 80606284 80606346 -41237510 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1199 502 347 12 0 chr11 80606967 80607137 -41236719 + MER20 DNA MER1_type 1 172 -47 1 1199 318 26 0 0 chr11 80607345 80607384 -41236472 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1199 536 250 46 7 chr11 80607539 80607692 -41236164 - MER20 DNA MER1_type -57 162 4 1 1199 702 258 109 103 chr11 80607945 80608247 -41235609 - MTEb LTR MaLR -60 319 16 1 1199 457 246 50 17 chr11 80608253 80608373 -41235483 + RSINE1 SINE B4 3 126 -39 1 1199 589 298 12 0 chr11 80608410 80608578 -41235278 + B3 SINE B2 1 170 -46 1 1199 318 106 0 0 chr11 80608592 80608639 -41235217 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1199 22 0 0 0 chr11 80608642 80608664 -41235192 + AT_rich Low_complexity Low_complexity 1 22 0 2 1199 558 0 0 0 chr11 80608842 80608904 -41234952 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 2 1200 1161 68 0 20 chr11 80609645 80609795 -41234061 - B1_Mus2 SINE Alu 0 147 1 2 1200 489 17 0 0 chr11 80609861 80609919 -41233937 + (CAAAC)n Simple_repeat Simple_repeat 5 62 0 2 1200 234 0 0 0 chr11 80609938 80609964 -41233892 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2 1200 203 188 21 0 chr11 80610173 80610221 -41233635 + CT-rich Low_complexity Low_complexity 2 50 0 2 1200 202 353 8 57 chr11 80611448 80611571 -41232285 - L2 LINE L2 -907 2512 2396 2 1200 769 287 119 26 chr11 80611750 80612061 -41231795 - ORR1E LTR MaLR -18 341 2 2 1200 707 242 13 13 chr11 80612373 80612524 -41231332 + RSINE1 SINE B4 2 152 -13 2 1200 219 114 0 0 chr11 80612553 80612588 -41231268 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1200 822 216 112 34 chr11 80612596 80612802 -41231054 - ID_B1 SINE B4 -2 222 1 2 1200 397 284 104 46 chr11 80612895 80613164 -41230692 + B4 SINE B4 2 281 -11 2 1200 615 149 0 0 chr11 80613183 80613290 -41230566 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2 1200 186 133 0 0 chr11 80614305 80614335 -41229521 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1200 228 67 0 0 chr11 80614351 80614381 -41229475 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 2 1200 997 182 67 5 chr11 80614385 80614578 -41229278 + B3 SINE B2 7 211 -5 2 1200 315 292 160 0 chr11 80614599 80614743 -41229113 - B3A SINE B2 -6 192 26 2 1200 698 207 235 28 chr11 80614744 80614923 -41228933 - B3 SINE B2 0 216 1 2 1200 268 285 207 25 chr11 80615181 80615379 -41228477 + MIRb SINE MIR 21 254 -14 2 1200 228 297 191 20 chr11 80615430 80615594 -41228262 - MIRc SINE MIR -26 236 56 2 1200 639 235 147 0 chr11 80615644 80615814 -41228042 + ID_B1 SINE B4 14 208 -16 2 1200 366 269 11 0 chr11 80616705 80616798 -41227058 - L2a LINE L2 -13 3413 3320 2 1200 211 114 164 41 chr11 80616899 80616972 -41226884 - L2a LINE L2 -300 3126 3045 2 1200 313 271 100 40 chr11 80617033 80617183 -41226673 - L1MB3 LINE L1 -5 6178 6020 2 1200 459 290 129 0 chr11 80617530 80617654 -41226202 + RSINE1 SINE B4 13 152 -13 2 1200 22 0 0 0 chr11 80617696 80617718 -41226138 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 2901 94 0 94 chr11 80617718 80618199 -41225657 - Lx LINE L1 -10 6644 6209 2 1200 227 93 23 0 chr11 80618428 80618471 -41225385 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1200 1190 170 19 9 chr11 80618500 80618714 -41225142 - B3 SINE B2 0 216 1 2 1200 1021 225 46 0 chr11 80618716 80618934 -41224922 - B4A SINE B4 -62 230 3 2 1200 731 302 42 164 chr11 80619350 80619537 -41224319 - MT2A LTR ERVL -101 432 245 2 1200 357 109 0 0 chr11 80619537 80619592 -41224264 + (CAT)n Simple_repeat Simple_repeat 2 56 0 2 1200 731 302 42 164 chr11 80619592 80619700 -41224156 - MT2A LTR ERVL -289 244 157 2 1200 866 258 14 32 chr11 80619700 80619920 -41223936 - B3 SINE B2 0 216 1 2 1200 731 302 42 164 chr11 80619920 80620031 -41223825 - MT2A LTR ERVL -377 156 75 2 1200 517 248 96 0 chr11 80619968 80620093 -41223763 - MTE2a LTR MaLR -242 137 1 2 1200 383 305 55 37 chr11 80620093 80620226 -41223630 + MLT1A1 LTR MaLR 13 155 -219 2 1200 247 296 71 44 chr11 80620254 80620367 -41223489 + ORR1E LTR MaLR 77 192 -167 2 1200 267 31 0 0 chr11 80620520 80620552 -41223304 + (TCC)n Simple_repeat Simple_repeat 2 33 0 2 1200 270 274 51 29 chr11 80620574 80620690 -41223166 - MIR SINE MIR -23 245 118 2 1200 189 274 118 0 chr11 80622104 80622155 -41221701 - L3 LINE CR1 -5 4484 4428 2 1200 278 87 0 21 chr11 80622395 80622442 -41221414 + (CCCCCT)n Simple_repeat Simple_repeat 4 49 0 2 1200 238 250 89 0 chr11 80622442 80622498 -41221358 - tRNA-Ala-GCY_ tRNA tRNA -6 69 9 2 1200 1290 205 65 15 chr11 80622553 80622815 -41221041 - MTD LTR MaLR -12 407 133 2 1200 231 36 0 0 chr11 80623179 80623207 -41220649 + (G)n Simple_repeat Simple_repeat 1 28 0 2 1200 202 317 0 0 chr11 80624169 80624229 -41219627 + GA-rich Low_complexity Low_complexity 2 61 0 2 1200 249 33 0 0 chr11 80624607 80624637 -41219219 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1200 273 310 39 26 chr11 80625554 80625681 -41218175 + MIRc SINE MIR 66 189 -19 2 1200 750 167 7 40 chr11 80626974 80627124 -41216732 - B1_Mur3 SINE Alu 0 149 5 2 1200 240 300 78 0 chr11 80627537 80627627 -41216229 - ORR1B1 LTR MaLR -276 118 22 2 1200 272 291 130 97 chr11 80628498 80628629 -41215227 - Lx8 LINE L1 -10 7463 7332 2 1200 504 0 0 0 chr11 80628629 80628685 -41215171 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1200 213 65 0 0 chr11 80628685 80628716 -41215140 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1200 272 291 130 97 chr11 80628716 80628883 -41214973 - Lx8 LINE L1 -142 7331 7155 2 1200 306 298 21 31 chr11 80633016 80633113 -41210743 - L1MCa LINE L1 -4512 1996 1901 2 1200 314 224 0 17 chr11 80633075 80633134 -41210722 + HAL1-3A_ME LINE L1 1975 2032 -826 2 1200 234 243 0 0 chr11 80634165 80634239 -41209617 + A-rich Low_complexity Low_complexity 1 74 0 2 1200 323 274 176 8 chr11 80635146 80635271 -41208585 + MER102b DNA MER1_type 37 182 -159 2 1200 495 112 0 0 chr11 80635633 80635722 -41208134 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1200 1224 115 15 45 chr11 80635791 80635877 -41207979 - B2_Mm2 SINE B2 -1 194 111 2 1200 1394 84 0 10 chr11 80635877 80636069 -41207787 + B2_Mm2 SINE B2 2 191 -4 2 1200 1224 115 15 45 chr11 80636069 80636182 -41207674 - B2_Mm2 SINE B2 -85 110 1 2 1200 345 250 0 0 chr11 80636756 80636828 -41207028 - PB1D10 SINE Alu -41 76 5 2 1200 426 139 0 0 chr11 80637697 80637769 -41206087 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 2 1200 371 272 76 22 chr11 80638158 80638320 -41205536 + MIRc SINE MIR 1 168 -100 2 1200 970 205 138 32 chr11 80638532 80638779 -41205077 + B4A SINE B4 1 273 -19 2 1200 1388 99 16 0 chr11 80639237 80639428 -41204428 - B2_Mm2 SINE B2 -1 194 1 2 1200 1412 224 121 68 chr11 80639595 80639992 -41203864 + MTD LTR MaLR 1 418 -1 2 1200 250 293 39 26 chr11 80640606 80640683 -41203173 - ID4_ SINE ID -4 79 2 2 1200 600 354 100 26 chr11 80640723 80640993 -41202863 - B4 SINE B4 -1 291 2 2 1200 28 29 0 0 chr11 80641107 80641142 -41202714 + AT_rich Low_complexity Low_complexity 1 35 0 2 1200 283 289 20 49 chr11 80641231 80641333 -41202523 - Charlie9 DNA MER1_type -2650 107 9 2 1200 357 300 0 0 chr11 80641790 80641870 -41201986 + PB1D10 SINE Alu 37 116 -1 2 1200 1924 191 21 32 chr11 80641901 80642279 -41201577 + ORR1D1 LTR MaLR 1 374 0 2 1200 342 229 0 0 chr11 80642346 80642407 -41201449 - ID4 SINE ID -18 65 5 2 1200 411 279 120 18 chr11 80642432 80642789 -41201067 - L1M5 LINE L1 -660 5464 5084 2 1200 387 0 0 0 chr11 80643043 80643086 -41200770 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1200 414 0 0 0 chr11 80643086 80643131 -41200725 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1200 348 200 0 0 chr11 80643141 80643216 -41200640 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1200 951 168 0 0 chr11 80643216 80643359 -41200497 - B1_Mur4 SINE Alu -3 147 5 2 1200 455 328 86 63 chr11 80643661 80644021 -41199835 + MLT1A1 LTR MaLR 1 374 0 2 1200 1192 88 0 0 chr11 80644059 80644219 -41199637 + B2_Mm2 SINE B2 1 160 -35 2 1200 315 333 89 84 chr11 80644230 80644613 -41199243 - L2 LINE L2 -686 2733 2349 2 1200 260 289 128 49 chr11 80645874 80646038 -41197818 - MER5B DNA MER1_type 0 178 2 2 1200 212 304 110 39 chr11 80646362 80646516 -41197340 + MIRb SINE MIR 84 248 -20 2 1200 405 136 0 0 chr11 80646893 80646959 -41196897 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1200 486 284 8 39 chr11 80646962 80647090 -41196766 - RSINE1 SINE B4 -25 140 17 2 1200 623 328 83 47 chr11 80647088 80647398 -41196458 - ORR1E LTR MaLR -8 351 27 2 1200 3202 34 0 0 chr11 80647398 80647755 -41196101 - IAPEY2_LTR LTR ERVK 0 357 1 2 1200 623 328 83 47 chr11 80647755 80647783 -41196073 - ORR1E LTR MaLR -333 26 1 2 1200 195 42 0 0 chr11 80647906 80647930 -41195926 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 1200 885 176 0 26 chr11 80647951 80648103 -41195753 - B1_Mur3 SINE Alu 0 149 2 2 1200 219 175 0 24 chr11 80648282 80648323 -41195533 + CT-rich Low_complexity Low_complexity 3 42 0 2 1200 537 92 0 0 chr11 80648336 80648412 -41195444 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1200 419 261 0 0 chr11 80648427 80648519 -41195337 - PB1D10 SINE Alu -21 96 5 2 1200 212 122 0 24 chr11 80649228 80649270 -41194586 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 2 1200 423 0 0 0 chr11 80649297 80649344 -41194512 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1200 185 290 45 68 chr11 80649402 80649535 -41194321 - L3 LINE CR1 -2191 2298 2169 2 1200 240 129 79 16 chr11 80649633 80649696 -41194160 + (GGGTG)n Simple_repeat Simple_repeat 5 71 0 2 1200 1708 122 0 4 chr11 80650172 80650418 -41193438 - ORR1A2 LTR MaLR -81 246 2 2 1200 495 275 83 0 chr11 80650447 80650567 -41193289 + ID_B1 SINE B4 92 221 -3 2 1200 937 137 13 52 chr11 80650577 80650731 -41193125 + B1_Mus1 SINE Alu 1 148 0 2 1200 328 277 24 0 chr11 80651140 80651223 -41192633 + MIR SINE MIR 49 133 -129 2 1200 375 301 101 22 chr11 80651636 80651775 -41192081 + MLT1J LTR MaLR 193 342 -170 2 1200 219 139 0 0 chr11 80651956 80651992 -41191864 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2 1200 854 247 80 5 chr11 80651992 80652191 -41191665 - ID_B1 SINE B4 -2 222 9 3 1200 827 176 69 7 chr11 80652193 80652394 -41191462 + ORR1B1 LTR MaLR 1 206 -164 3 1200 913 145 81 38 chr11 80652359 80652545 -41191311 - B2_Mm2 SINE B2 0 195 2 3 1200 800 130 94 0 chr11 80652546 80652684 -41191172 + ORR1B1 LTR MaLR 146 296 -98 3 1200 1227 151 57 30 chr11 80652684 80653090 -41190766 + RMER6B LTR ERVK 1 456 -5 3 1200 692 114 0 9 chr11 80653096 80653202 -41190654 + ORR1A4 LTR MaLR 225 329 0 3 1200 229 294 68 39 chr11 80653873 80654078 -41189778 - L1ME3B LINE L1 -115 6125 5915 3 1200 235 301 59 40 chr11 80654088 80654240 -41189616 - L1ME3B LINE L1 -437 5803 5649 3 1200 328 258 24 111 chr11 80654360 80654508 -41189348 - RSINE1 SINE B4 -154 138 2 3 1200 243 0 0 0 chr11 80654740 80654767 -41189089 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1200 351 0 0 0 chr11 80654767 80654805 -41189051 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1200 679 269 14 0 chr11 80654817 80654962 -41188894 - RSINE1 SINE B4 -13 152 6 3 1200 458 304 91 80 chr11 80655037 80655312 -41188544 - B4A SINE B4 -10 282 5 3 1200 852 266 46 9 chr11 80655316 80655532 -41188324 - B4A SINE B4 -62 230 7 3 1200 632 108 40 13 chr11 80655792 80655942 -41187914 + (CAGA)n Simple_repeat Simple_repeat 2 155 0 3 1200 388 255 123 27 chr11 80655942 80656170 -41187686 + L1MDa LINE L1 2369 2454 -795 3 1200 495 0 0 0 chr11 80656204 80656259 -41187597 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1200 316 298 60 11 chr11 80656718 80656901 -41186955 + L1MDa LINE L1 801 992 -5626 3 1200 1148 229 202 15 chr11 80656906 80657243 -41186613 - MTD LTR MaLR -14 405 6 3 1200 242 261 142 67 chr11 80657281 80657597 -41186259 + L1MDa LINE L1 1041 1380 -5238 3 1200 786 167 0 0 chr11 80657655 80657835 -41186021 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1200 369 287 67 48 chr11 80657845 80657971 -41185885 + L1MDa LINE L1 1542 1671 -4962 3 1200 934 217 5 91 chr11 80657971 80658179 -41185677 + B3A SINE B2 5 194 -4 3 1200 369 287 67 48 chr11 80658179 80658217 -41185639 + L1MDa LINE L1 1672 1709 -4924 3 1200 218 32 32 0 chr11 80658623 80658654 -41185202 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 3 1200 283 292 93 21 chr11 80658654 80658794 -41185062 - L1MB4 LINE L1 -212 5968 5819 3 1200 403 206 2 14 chr11 80658861 80658969 -41184887 - L1MB3 LINE L1 -329 5842 5736 3 1200 764 271 15 25 chr11 80659031 80659235 -41184621 + MER58B DNA MER1_type 125 326 -15 3 1200 399 21 0 0 chr11 80659413 80659461 -41184395 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1200 466 300 106 62 chr11 80659467 80659694 -41184162 - B4 SINE B4 -1 291 55 3 1200 207 0 0 0 chr11 80659956 80659979 -41183877 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 1200 789 122 14 7 chr11 80659979 80660127 -41183729 + (GA)n Simple_repeat Simple_repeat 2 150 0 3 1200 1131 112 0 0 chr11 80660160 80660330 -41183526 + (GGGA)n Simple_repeat Simple_repeat 4 173 0 3 1200 273 276 0 0 chr11 80660336 80660394 -41183462 - ID4_ SINE ID -10 73 16 3 1200 352 290 80 0 chr11 80661143 80661243 -41182613 - PB1D10 SINE Alu -7 110 3 3 1200 613 287 64 0 chr11 80661243 80661318 -41182538 - ID SINE ID -136 88 4 3 1200 195 279 12 81 chr11 80661515 80661601 -41182255 - MIRm SINE MIR -11 265 186 3 1200 531 321 51 37 chr11 80662372 80662666 -41181190 - LTR90A LTR LTR -612 364 67 3 1200 402 21 0 0 chr11 80662724 80662771 -41181085 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1200 2820 81 26 13 chr11 80663130 80663516 -41180340 + MTB_Mm LTR MaLR 1 391 -16 3 1200 414 0 0 0 chr11 80663740 80663786 -41180070 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1200 426 269 11 11 chr11 80663787 80663881 -41179975 - PB1D10 SINE Alu -16 101 8 3 1200 360 333 52 32 chr11 80664054 80664209 -41179647 - MIR3 SINE MIR -43 165 8 3 1200 190 250 0 0 chr11 80664587 80664623 -41179233 - MIRc SINE MIR -102 166 131 3 1200 865 227 15 35 chr11 80665029 80665230 -41178626 - B3A SINE B2 0 198 2 3 1200 374 217 61 78 chr11 80665669 80665784 -41178072 + PB1D10 SINE Alu 5 117 0 3 1200 327 231 0 0 chr11 80665800 80665865 -41177991 + ID4_ SINE ID 2 66 -17 3 1200 249 347 150 0 chr11 80666380 80666527 -41177329 - MIR SINE MIR -19 249 77 3 1200 280 250 80 0 chr11 80667460 80667560 -41176296 - L1MD2 LINE L1 -3 6356 6249 3 1200 183 309 73 12 chr11 80668729 80668811 -41175045 - MIRc SINE MIR -92 176 90 3 1200 480 77 0 0 chr11 80668884 80668949 -41174907 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1200 414 249 122 157 chr11 80668949 80669235 -41174621 - B4 SINE B4 -15 277 2 3 1200 253 163 0 20 chr11 80669288 80669338 -41174518 - MER5B DNA MER1_type -9 169 121 3 1200 1174 82 0 0 chr11 80669387 80669534 -41174322 + B1_Mus1 SINE Alu 2 148 0 3 1200 250 346 121 10 chr11 80669728 80669935 -41173921 + L1MB1 LINE L1 5927 6156 -33 3 1200 503 184 259 0 chr11 80669960 80670118 -41173738 + Lx9 LINE L1 7446 7644 0 3 1200 1003 212 30 5 chr11 80670234 80670433 -41173423 + B3 SINE B2 1 204 -12 3 1200 272 279 132 54 chr11 80670572 80670701 -41173155 - MIRb SINE MIR -9 259 121 3 1200 507 95 0 0 chr11 80671064 80671138 -41172718 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1200 448 131 58 25 chr11 80671164 80671407 -41172449 + (TG)n Simple_repeat Simple_repeat 1 250 0 3 1200 192 40 0 0 chr11 80671404 80671429 -41172427 + (TGG)n Simple_repeat Simple_repeat 3 27 0 3 1200 273 57 0 0 chr11 80671431 80671466 -41172390 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1200 818 215 65 28 chr11 80671511 80671726 -41172130 + ID_B1 SINE B4 2 224 0 3 1200 351 221 0 0 chr11 80672140 80672226 -41171630 + GA-rich Low_complexity Low_complexity 2 87 0 3 1200 326 308 30 37 chr11 80672409 80672544 -41171312 + MIRb SINE MIR 126 259 -9 3 1200 425 259 157 0 chr11 80673669 80673777 -41170079 + PB1 SINE Alu 1 125 -2 3 1200 304 319 29 0 chr11 80673793 80673931 -41169925 + BC1_Mm scRNA scRNA 1 142 -10 3 1200 1203 69 0 0 chr11 80674367 80674512 -41169344 + B1_Mus1 SINE Alu 2 146 -2 3 1200 660 111 0 0 chr11 80674513 80674612 -41169244 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 3 1200 332 293 87 20 chr11 80675108 80675258 -41168598 - MIR SINE MIR -54 208 49 3 1200 377 198 26 8 chr11 80675441 80675558 -41168298 + CT-rich Low_complexity Low_complexity 3 121 0 3 1200 762 282 5 41 chr11 80675584 80675780 -41168076 - B3A SINE B2 -9 189 1 3 1200 280 314 26 47 chr11 80677164 80677335 -41166521 + MIRc SINE MIR 16 182 -94 3 1200 297 0 0 0 chr11 80677801 80677834 -41166022 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1200 506 167 0 8 chr11 80677834 80677967 -41165889 + GA-rich Low_complexity Low_complexity 2 133 0 3 1200 238 303 12 73 chr11 80679209 80679291 -41164565 - L2c LINE L2 -48 3339 3238 3 1200 4952 49 8 0 chr11 80679508 80680103 -41163753 + L1Md_F2 LINE L1 5980 6579 -3 3 1200 980 237 47 9 chr11 80680104 80680317 -41163539 + B4 SINE B4 31 251 -41 3 1200 230 302 28 85 chr11 80680422 80680599 -41163257 + MIRc SINE MIR 88 254 -14 3 1200 823 167 14 7 chr11 80680954 80681099 -41162757 - B1_Mus1 SINE Alu -2 146 1 3 1200 422 209 52 137 chr11 80681498 80681709 -41162147 + MER53 DNA hAT 1 193 0 3 1200 7709 133 27 11 chr11 80681960 80683264 -41160592 + Lx4B LINE L1 5730 7053 -5 3 1200 2234 156 74 18 chr11 80683486 80683877 -41159979 - MTC LTR MaLR -8 413 1 3 1200 239 321 17 78 chr11 80684237 80684352 -41159504 - MIRb SINE MIR -46 222 115 3 1200 750 303 40 107 chr11 80685006 80685305 -41158551 - B4 SINE B4 -1 291 13 3 1200 207 312 207 21 chr11 80685566 80685794 -41158062 + L2a LINE L2 2947 3211 -164 3 1200 198 176 0 0 chr11 80685832 80685883 -41157973 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1200 289 202 234 0 chr11 80685897 80685991 -41157865 + L2a LINE L2 3292 3407 -19 3 1200 1137 61 7 7 chr11 80686876 80687024 -41156832 + B1_Mus1 SINE Alu 1 148 0 3 1200 538 285 116 0 chr11 80687832 80688004 -41155852 + Lx7 LINE L1 7127 7318 -378 3 1200 315 272 0 24 chr11 80688125 80688208 -41155648 + L2a LINE L2 3340 3420 -6 3 1200 1948 196 50 11 chr11 80688523 80688905 -41154951 + MTC LTR MaLR 2 398 -23 3 1200 273 29 0 0 chr11 80688924 80688958 -41154898 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1200 723 168 79 14 chr11 80688966 80688986 -41154870 + B1_Mus1 SINE Alu 1 31 -117 3 1200 387 0 0 0 chr11 80688986 80689029 -41154827 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1200 723 168 79 14 chr11 80689029 80689147 -41154709 + B1_Mus1 SINE Alu 32 147 -1 3 1200 306 0 0 0 chr11 80689149 80689183 -41154673 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1200 575 27 0 14 chr11 80689196 80689270 -41154586 + (CAAAC)n Simple_repeat Simple_repeat 5 77 0 3 1200 732 288 30 46 chr11 80689433 80689695 -41154161 - Charlie22a DNA MER1_type -220 271 14 3 1200 255 294 15 0 chr11 80689802 80689870 -41153986 + Charlie24 DNA MER1_type 2379 2447 -3 3 1200 180 77 0 0 chr11 80689934 80689960 -41153896 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1200 572 227 7 0 chr11 80689963 80690113 -41153743 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 1200 181 224 19 58 chr11 80690254 80690306 -41153550 + L2b LINE L2 3228 3277 -98 3 1200 992 295 109 45 chr11 80691976 80692445 -41151411 + MLT1D LTR MaLR 5 503 -2 3 1200 206 62 31 0 chr11 80693739 80693771 -41150085 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1200 639 0 0 0 chr11 80694688 80694759 -41149097 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 3 1200 1047 77 25 19 chr11 80694917 80695076 -41148780 - URR1A DNA MER1_type 0 226 67 3 1200 237 33 0 0 chr11 80696475 80696505 -41147351 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1200 200 274 18 28 chr11 80697809 80697918 -41145938 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 1200 237 108 0 0 chr11 80698024 80698061 -41145795 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1200 324 0 0 0 chr11 80698357 80698393 -41145463 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1200 225 0 0 0 chr11 80698393 80698417 -41145439 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1200 238 196 0 21 chr11 80698422 80698469 -41145387 + GA-rich Low_complexity Low_complexity 4 49 0 4 1200 513 282 93 52 chr11 80698800 80698972 -41144884 + MTEa LTR MaLR 1 179 -200 4 1200 663 67 0 0 chr11 80699026 80699115 -41144741 + (TCCC)n Simple_repeat Simple_repeat 2 90 0 4 1200 181 370 71 41 chr11 80699243 80699412 -41144444 - MIRc SINE MIR -76 192 19 4 1200 203 265 68 48 chr11 80699829 80699932 -41143924 - MIR3 SINE MIR -2 206 102 4 1200 538 312 6 33 chr11 80701014 80701196 -41142660 - MER3 DNA MER1_type -28 181 5 4 1200 1693 220 56 36 chr11 80701218 80701685 -41142171 + Lx8 LINE L1 6337 6812 -661 4 1200 616 272 89 29 chr11 80702457 80702649 -41141207 - B3A SINE B2 -2 214 7 4 1200 280 179 8 0 chr11 80703103 80703156 -41140700 + L2b LINE L2 3325 3379 -8 4 1200 201 74 0 0 chr11 80703430 80703457 -41140399 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1200 180 0 0 0 chr11 80703970 80703990 -41139866 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1200 581 285 126 16 chr11 80704081 80704327 -41139529 + MER31B LTR ERV1 193 465 -1 4 1200 297 0 0 0 chr11 80704902 80704935 -41138921 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1200 341 207 68 11 chr11 80706116 80706204 -41137652 + L4 LINE RTE 1728 1820 -209 4 1200 307 287 140 45 chr11 80706205 80706362 -41137494 - MLT1D LTR MaLR -37 468 297 4 1200 788 273 31 31 chr11 80707864 80708057 -41135799 - B3 SINE B2 -5 211 19 4 1200 419 0 20 0 chr11 80708057 80708108 -41135748 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1200 801 193 21 0 chr11 80708134 80708274 -41135582 - B1_Mur2 SINE Alu -5 144 2 4 1200 354 279 53 71 chr11 80708281 80708451 -41135405 - L1ME2 LINE L1 -39 6125 5959 4 1200 1343 84 15 35 chr11 80708466 80708664 -41135192 - B2_Mm2 SINE B2 0 195 2 4 1200 281 331 24 0 chr11 80708827 80708954 -41134902 - L1ME2 LINE L1 -341 5823 5694 4 1200 400 280 7 178 chr11 80708970 80709038 -41134818 - ID_B1 SINE B4 -13 211 158 4 1200 594 0 0 0 chr11 80709038 80709104 -41134752 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 4 1200 4570 145 57 7 chr11 80709107 80709830 -41134026 - Lx5 LINE L1 -16 7034 6276 4 1200 400 280 7 178 chr11 80709830 80709909 -41133947 - ID_B1 SINE B4 -67 157 86 4 1200 240 298 36 53 chr11 80709917 80710096 -41133760 - L1ME2 LINE L1 -748 5696 5515 4 1200 744 259 6 12 chr11 80710096 80710260 -41133596 - RSINE1 SINE B4 0 165 3 4 1200 236 309 82 53 chr11 80710260 80710493 -41133363 - L1ME2 LINE L1 -930 5514 5272 4 1200 995 202 61 0 chr11 80710683 80710881 -41132975 - B3 SINE B2 -6 210 1 4 1200 503 322 44 12 chr11 80710920 80711168 -41132688 - L1ME2 LINE L1 -94 6070 5815 4 1200 450 0 0 0 chr11 80711320 80711370 -41132486 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1200 603 165 0 0 chr11 80711376 80711467 -41132389 - B1_Mus2 SINE Alu -17 130 40 4 1200 225 224 235 15 chr11 80711417 80711485 -41132371 - 4.5SRNA scRNA scRNA -8 86 4 4 1200 33 0 0 0 chr11 80711538 80711571 -41132285 + AT_rich Low_complexity Low_complexity 1 33 0 4 1200 671 292 17 17 chr11 80711581 80711762 -41132094 - B3A SINE B2 -17 181 1 4 1200 238 213 50 62 chr11 80711830 80711910 -41131946 + MER90 LTR ERV1 207 285 -290 4 1200 294 287 94 13 chr11 80711914 80712073 -41131783 - L1ME2 LINE L1 -2325 3821 3650 4 1200 691 301 19 44 chr11 80712168 80712484 -41131372 - L1ME2 LINE L1 -2460 3686 3373 4 1200 248 293 19 74 chr11 80712736 80712898 -41130958 - L1MD LINE L1 -3319 2827 2675 4 1200 1869 193 75 28 chr11 80712922 80713322 -41130534 - MTD LTR MaLR 0 419 1 4 1200 405 329 87 51 chr11 80713322 80713407 -41130449 - L1ME2 LINE L1 -3489 2657 2583 4 1200 427 318 144 69 chr11 80713407 80713741 -41130115 + ORR1E LTR MaLR 1 359 0 4 1200 405 329 87 51 chr11 80713741 80713908 -41129948 - L1ME2 LINE L1 -3564 2582 2396 4 1200 355 335 83 42 chr11 80714069 80714110 -41129746 - L1ME2 LINE L1 -4029 2213 2176 4 1200 910 203 124 5 chr11 80714110 80714303 -41129553 - B3 SINE B2 0 216 1 4 1200 355 335 83 42 chr11 80714303 80714429 -41129427 - L1ME2 LINE L1 -4067 2175 2039 4 1200 565 321 103 61 chr11 80714436 80715473 -41128383 - L1ME2 LINE L1 -4127 2115 1035 4 1200 1110 294 21 3 chr11 80715516 80715803 -41128053 - B4A SINE B4 0 292 1 4 1200 272 326 14 14 chr11 80715809 80715949 -41127907 - L1ME2 LINE L1 -5195 1047 908 4 1200 304 354 78 39 chr11 80716469 80716622 -41127234 - L1ME2 LINE L1 -5660 476 318 4 1200 252 389 46 15 chr11 80716869 80717065 -41126791 - MIRb SINE MIR -63 205 4 4 1200 204 269 15 15 chr11 80717464 80717532 -41126324 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 4 1200 828 311 20 65 chr11 80717538 80717844 -41126012 - B4 SINE B4 0 292 1 4 1200 349 169 0 0 chr11 80717881 80717940 -41125916 + B1_Mur4 SINE Alu 2 60 -90 4 1200 283 211 18 0 chr11 80717889 80717946 -41125910 + ID_B1 SINE B4 90 147 -77 4 1200 891 146 0 33 chr11 80717949 80718133 -41125723 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 4 1200 749 86 0 54 chr11 80718136 80718247 -41125609 + B1_Mur3 SINE Alu 40 144 -5 4 1200 355 295 40 27 chr11 80718510 80718660 -41125196 + L3 LINE CR1 4116 4267 -222 4 1200 222 282 141 0 chr11 80718661 80718732 -41125124 - MIRb SINE MIR -4 264 184 4 1200 242 278 0 0 chr11 80718844 80718898 -41124958 + L3 LINE CR1 4410 4463 -26 4 1200 887 239 54 0 chr11 80719144 80719349 -41124507 - ID_B1 SINE B4 -5 219 4 4 1200 663 13 0 0 chr11 80719359 80719435 -41124421 + (TTTTC)n Simple_repeat Simple_repeat 5 80 0 4 1200 498 305 128 0 chr11 80719489 80719630 -41124226 + B4 SINE B4 1 159 -133 4 1200 609 110 0 0 chr11 80719632 80719723 -41124133 + (TCCC)n Simple_repeat Simple_repeat 3 93 0 4 1200 986 280 42 60 chr11 80720812 80721165 -41122691 - ORR1E LTR MaLR -12 347 1 4 1200 252 241 19 0 chr11 80721447 80721501 -41122355 - LTR85c LTR Gypsy? -696 127 73 4 1200 264 276 0 49 chr11 80721731 80721792 -41122064 + B4 SINE B4 32 89 -203 4 1200 409 292 70 64 chr11 80723438 80723692 -41120164 - MIR SINE MIR -4 258 8 4 1200 342 300 113 36 chr11 80723819 80723994 -41119862 - MIRb SINE MIR -76 192 7 4 1200 811 139 25 11 chr11 80724868 80725155 -41118701 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 4 1200 194 153 169 169 chr11 80725862 80725980 -41117876 + MIRc SINE MIR 10 127 -141 4 1200 303 234 33 163 chr11 80726664 80726756 -41117100 - PB1D10 SINE Alu -59 90 11 4 1200 244 312 31 138 chr11 80726697 80726827 -41117029 - B4A SINE B4 -147 145 30 4 1200 1086 271 17 47 chr11 80727588 80727886 -41115970 - B4A SINE B4 -2 290 2 4 1200 234 0 0 0 chr11 80728005 80728031 -41115825 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1200 779 198 147 11 chr11 80728040 80728224 -41115632 - B3 SINE B2 -7 209 1 4 1200 600 260 156 60 chr11 80728434 80728716 -41115140 + MLT1B LTR MaLR 63 371 -19 4 1200 1010 202 98 29 chr11 80729122 80729366 -41114490 + MTEa LTR MaLR 3 263 -116 4 1200 270 179 106 6 chr11 80729426 80729506 -41114350 + MTEa LTR MaLR 214 300 -79 4 1200 270 111 111 0 chr11 80729531 80729576 -41114280 + MTEa LTR MaLR 214 263 -116 4 1200 248 137 93 56 chr11 80729557 80729611 -41114245 + MTEa LTR MaLR 208 263 -116 4 1200 270 111 111 0 chr11 80729671 80729716 -41114140 + MTEa LTR MaLR 214 263 -116 4 1200 248 190 92 51 chr11 80729697 80729786 -41114070 + MTEa LTR MaLR 208 300 -79 4 1200 229 156 111 0 chr11 80729776 80729821 -41114035 + MTEa LTR MaLR 214 263 -116 4 1200 252 136 134 0 chr11 80729797 80729856 -41114000 + MTEa LTR MaLR 190 263 -116 4 1200 616 213 0 22 chr11 80729846 80729985 -41113871 + MTEa LTR MaLR 214 349 -30 4 1200 288 0 0 0 chr11 80729985 80730017 -41113839 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1200 241 279 117 52 chr11 80730594 80730744 -41113112 + MER104 DNA Tc2 18 174 -7 4 1200 191 361 0 0 chr11 80730750 80730822 -41113034 + MIRb SINE MIR 189 260 -8 4 1200 264 320 50 37 chr11 80730811 80731005 -41112851 + MIRb SINE MIR 63 259 -9 4 1200 1050 144 0 0 chr11 80731016 80731196 -41112660 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1200 348 152 0 0 chr11 80731205 80731271 -41112585 + CT-rich Low_complexity Low_complexity 3 68 0 4 1200 217 337 36 0 chr11 80732104 80732187 -41111669 - MIR SINE MIR -94 168 83 4 1200 216 339 0 0 chr11 80732378 80732443 -41111413 - MIRc SINE MIR -116 152 88 4 1200 846 251 29 5 chr11 80732663 80732871 -41110985 + ID_B1 SINE B4 2 214 -10 4 1200 261 0 0 0 chr11 80732893 80732922 -41110934 + (CCA)n Simple_repeat Simple_repeat 2 30 0 4 1200 278 292 183 18 chr11 80732991 80733155 -41110701 + MIRb SINE MIR 20 210 -58 4 1200 622 156 27 24 chr11 80733218 80733778 -41110078 + (CA)n Simple_repeat Simple_repeat 1 561 0 4 1200 554 184 6 33 chr11 80733816 80733996 -41109860 + (CATA)n Simple_repeat Simple_repeat 4 178 0 4 1200 211 152 21 21 chr11 80733996 80734043 -41109813 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1200 659 162 5 38 chr11 80734043 80734229 -41109627 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1200 807 127 35 0 chr11 80734190 80734363 -41109493 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1200 291 28 0 0 chr11 80735196 80735232 -41108624 + (TATTG)n Simple_repeat Simple_repeat 3 38 0 4 1200 560 315 50 25 chr11 80735492 80735694 -41108162 - ID_B1 SINE B4 0 224 18 4 1200 433 282 199 0 chr11 80735916 80736072 -41107784 + MLT1J2 LTR MaLR 258 444 -4 4 1200 186 43 0 0 chr11 80736497 80736520 -41107336 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1200 383 239 134 101 chr11 80736530 80736679 -41107177 - RSINE1 SINE B4 0 165 12 4 1200 238 280 191 11 chr11 80737131 80737225 -41106631 + MIR3 SINE MIR 97 207 -1 4 1200 216 0 0 0 chr11 80737958 80737982 -41105874 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 4 1200 234 0 0 0 chr11 80737982 80738007 -41105849 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1200 213 154 0 0 chr11 80738224 80738263 -41105593 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 4 1200 201 264 41 14 chr11 80739647 80739720 -41104136 + MER5B DNA MER1_type 6 80 -98 4 1200 228 291 12 25 chr11 80739850 80739931 -41103925 - MIRb SINE MIR -127 141 62 4 1201 815 61 9 0 chr11 80740897 80741011 -41102845 + (TG)n Simple_repeat Simple_repeat 1 115 0 4 1201 1326 151 0 0 chr11 80741143 80741342 -41102514 - URR1B DNA MER1_type -1 224 26 4 1201 276 350 24 49 chr11 80741628 80741751 -41102105 - PB1D7 SINE Alu 0 120 1 4 1201 756 269 47 0 chr11 80741751 80741813 -41102043 - ID SINE ID -143 81 12 4 1201 274 167 0 69 chr11 80741787 80741845 -41102011 + AmnSINE1 SINE SINE 34 87 -488 4 1201 725 234 125 0 chr11 80742718 80742910 -41100946 - B3 SINE B2 0 216 1 5 1201 309 363 40 85 chr11 80743043 80743266 -41100590 + L1MC LINE L1 5595 5807 -2075 5 1201 211 203 13 13 chr11 80743468 80743543 -41100313 + CT-rich Low_complexity Low_complexity 1 75 0 5 1201 330 87 0 0 chr11 80743846 80743892 -41099964 + (ACCG)n Simple_repeat Simple_repeat 3 48 0 5 1201 1031 249 14 9 chr11 80744695 80744918 -41098938 + B4A SINE B4 1 224 -68 5 1201 387 0 0 0 chr11 80744992 80745035 -41098821 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1201 253 186 29 0 chr11 80745050 80745120 -41098736 + GA-rich Low_complexity Low_complexity 1 72 0 5 1201 198 103 0 0 chr11 80745120 80745149 -41098707 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 5 1201 347 284 53 0 chr11 80745828 80745923 -41097933 - U6 snRNA snRNA -1 106 7 5 1201 210 37 0 0 chr11 80745942 80745969 -41097887 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1201 356 200 115 23 chr11 80746075 80746162 -41097694 - PB1D7 SINE Alu -1 119 25 5 1201 608 303 35 49 chr11 80746216 80746504 -41097352 - L1MEc LINE L1 -3195 3124 2841 5 1201 1716 211 21 54 chr11 80746512 80746898 -41096958 + ORR1D1 LTR MaLR 2 374 0 5 1201 271 225 14 27 chr11 80747007 80747080 -41096776 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 5 1201 372 152 0 0 chr11 80747086 80747152 -41096704 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1201 756 275 161 12 chr11 80747152 80747406 -41096450 - B4A SINE B4 0 292 1 5 1201 751 197 7 39 chr11 80747436 80747589 -41096267 - B1F SINE Alu -1 148 1 5 1201 413 324 100 19 chr11 80747612 80747834 -41096022 - L1MEc LINE L1 -3622 2697 2459 5 1201 728 267 49 5 chr11 80747834 80748006 -41095850 - B3 SINE B2 -1 215 40 5 1201 333 0 0 0 chr11 80748006 80748043 -41095813 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1201 728 267 49 5 chr11 80748043 80748073 -41095783 - B3 SINE B2 -177 39 5 5 1201 274 324 102 20 chr11 80748073 80748105 -41095751 - L1MEc LINE L1 -3861 2458 2424 5 1201 1053 262 13 81 chr11 80748146 80748453 -41095403 - B4 SINE B4 -5 287 2 5 1201 396 0 0 0 chr11 80748473 80748517 -41095339 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1201 356 296 71 0 chr11 80748521 80748619 -41095237 - PB1D10 SINE Alu -11 106 2 5 1201 3705 129 66 37 chr11 80748690 80749360 -41094496 - RMER6C LTR ERVK -1 689 1 5 1201 261 269 69 25 chr11 80749378 80749538 -41094318 - L1MEc LINE L1 -4041 2374 2208 5 1201 498 33 0 0 chr11 80749550 80749610 -41094246 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1201 620 288 82 18 chr11 80749621 80749791 -41094065 - ID_B1 SINE B4 -43 181 1 5 1201 505 284 179 39 chr11 80749984 80750504 -41093352 - L1MEc LINE L1 -4377 2023 1431 5 1201 363 271 113 25 chr11 80750527 80750731 -41093125 - L1MEc LINE L1 -5014 1386 1165 5 1201 275 279 47 0 chr11 80750746 80750832 -41093024 - L1MEc LINE L1 -5293 1107 1018 5 1201 423 0 0 0 chr11 80750963 80751010 -41092846 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1201 213 39 0 0 chr11 80751010 80751035 -41092821 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1201 385 254 54 113 chr11 80751186 80751372 -41092484 - B4A SINE B4 -117 175 1 5 1201 1066 278 37 20 chr11 80751422 80751775 -41092081 - L1MEc LINE L1 -5516 884 526 5 1201 2223 110 31 0 chr11 80751786 80752103 -41091753 - ORR1A4 LTR MaLR 0 329 3 5 1201 264 331 69 34 chr11 80752320 80752495 -41091361 - L1MEc LINE L1 -6184 216 36 5 1201 256 352 63 28 chr11 80752641 80752854 -41091002 - MIR SINE MIR -29 239 14 5 1201 780 266 149 4 chr11 80753455 80753704 -41090152 + B4A SINE B4 2 286 -6 5 1201 387 119 0 0 chr11 80753718 80753785 -41090071 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1201 224 310 54 39 chr11 80754941 80755077 -41088779 + MIR SINE MIR 35 174 -88 5 1201 324 0 0 0 chr11 80755449 80755485 -41088371 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1201 623 243 34 40 chr11 80755584 80755760 -41088096 - B4 SINE B4 -115 177 3 5 1201 614 193 8 0 chr11 80756041 80756160 -41087696 + Lx4B LINE L1 6557 6676 -382 5 1201 750 96 0 0 chr11 80756161 80756265 -41087591 + B2_Mm2 SINE B2 2 105 -90 5 1201 2592 152 19 24 chr11 80756310 80756727 -41087129 + Lx5 LINE L1 6636 7050 0 5 1201 1381 245 47 86 chr11 80757515 80758002 -41085854 + RLTR12B LTR ERVK 46 513 -15 5 1201 933 108 0 14 chr11 80757997 80758138 -41085718 - B2_Mm2 SINE B2 -24 171 33 5 1201 571 250 37 29 chr11 80758158 80758294 -41085562 - RSINE1 SINE B4 -25 140 4 5 1201 315 49 0 0 chr11 80758335 80758376 -41085480 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 5 1201 888 250 15 30 chr11 80758381 80758583 -41085273 - B3 SINE B2 -17 199 1 5 1201 189 107 0 0 chr11 80758865 80758893 -41084963 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1201 759 45 0 35 chr11 80758899 80759014 -41084842 + (AGGGGG)n Simple_repeat Simple_repeat 6 116 0 5 1201 354 204 0 0 chr11 80759113 80759206 -41084650 + (TGAG)n Simple_repeat Simple_repeat 4 96 0 5 1201 333 311 117 69 chr11 80760176 80760321 -41083535 - MIR SINE MIR 0 262 111 5 1201 1100 218 103 4 chr11 80760884 80761146 -41082710 + B4A SINE B4 1 288 -4 5 1201 299 65 0 21 chr11 80761150 80761197 -41082659 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1201 28 0 0 0 chr11 80762538 80762566 -41081290 + AT_rich Low_complexity Low_complexity 1 28 0 5 1201 193 171 0 0 chr11 80763170 80763205 -41080651 + L2a LINE L2 3391 3425 -1 5 1201 589 286 73 38 chr11 80764089 80764377 -41079479 + MER67A LTR ERV1 12 328 -186 5 1201 580 266 90 0 chr11 80764460 80764648 -41079208 + MER67A LTR ERV1 339 543 0 5 1201 375 23 0 0 chr11 80765661 80765705 -41078151 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1201 633 314 82 55 chr11 80766256 80766586 -41077270 + MLT1D LTR MaLR 87 425 -80 5 1201 441 0 0 0 chr11 80766587 80766636 -41077220 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1201 785 256 44 91 chr11 80766646 80766705 -41077151 - B4A SINE B4 -8 284 227 5 1201 206 62 0 30 chr11 80766705 80766738 -41077118 + (CAT)n Simple_repeat Simple_repeat 1 32 0 5 1201 785 256 44 91 chr11 80766738 80766975 -41076881 - B4A SINE B4 -66 226 3 5 1201 686 181 7 0 chr11 80766994 80767143 -41076713 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 5 1201 880 180 29 0 chr11 80767147 80767286 -41076570 - B1_Mur2 SINE Alu -6 143 1 5 1201 462 219 225 0 chr11 80767303 80767324 -41076532 - B3A SINE B2 0 198 171 5 1201 351 0 0 0 chr11 80767324 80767363 -41076493 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1201 462 219 225 0 chr11 80767363 80767501 -41076355 - B3A SINE B2 -28 170 4 5 1201 191 339 17 0 chr11 80768331 80768390 -41075466 + L2c LINE L2 3261 3320 -67 5 1201 1575 168 81 67 chr11 80769047 80769405 -41074451 + ORR1D1 LTR MaLR 7 369 -5 5 1201 348 24 0 0 chr11 80769767 80769808 -41074048 + (A)n Simple_repeat Simple_repeat 1 41 0 5 1201 549 92 31 0 chr11 80770473 80770571 -41073285 + (TC)n Simple_repeat Simple_repeat 2 102 0 5 1201 420 20 0 0 chr11 80770585 80770634 -41073222 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1201 327 224 33 56 chr11 80770735 80770825 -41073031 - MIRc SINE MIR -133 135 48 5 1201 207 293 62 42 chr11 80770895 80770991 -41072865 + L2b LINE L2 3277 3374 -1 5 1201 275 316 50 33 chr11 80771210 80771331 -41072525 - MER45R DNA Tip100 -1439 142 20 5 1201 819 252 46 43 chr11 80772203 80772472 -41071384 + MTD LTR MaLR 1 264 -143 5 1201 1089 128 74 11 chr11 80772472 80772662 -41071194 + Lx5 LINE L1 6352 6553 -497 5 1201 499 267 112 0 chr11 80772919 80773080 -41070776 - B3A SINE B2 -18 180 2 5 1201 22 0 0 0 chr11 80773409 80773431 -41070425 + AT_rich Low_complexity Low_complexity 1 22 0 5 1201 524 261 137 0 chr11 80774035 80774188 -41069668 - B3A SINE B2 -14 184 11 5 1201 403 304 73 65 chr11 80775203 80775587 -41068269 - HAL1 LINE L1 0 2507 2121 5 1201 547 226 43 58 chr11 80775640 80775841 -41068015 - B4 SINE B4 0 292 1 5 1201 430 297 45 50 chr11 80776496 80776833 -41067023 - HAL1 LINE L1 -1249 1258 924 5 1201 728 280 50 25 chr11 80776836 80777074 -41066782 - MIR SINE MIR -2 260 17 5 1201 794 260 29 91 chr11 80777924 80778233 -41065623 - B4 SINE B4 0 292 3 5 1201 320 317 87 33 chr11 80778240 80778390 -41065466 + Charlie15a DNA MER1_type 1 158 -66 5 1201 230 292 100 16 chr11 80778615 80778795 -41065061 + MIRb SINE MIR 51 256 -6 5 1201 458 386 17 44 chr11 80779029 80779327 -41064529 - L2a LINE L2 -213 3213 2924 5 1201 249 233 16 16 chr11 80779704 80779765 -41064091 + MLT1M LTR MaLR 125 185 -487 5 1201 232 297 0 26 chr11 80780085 80780161 -41063695 + MLT1M LTR MaLR 517 590 -5 5 1201 235 322 0 22 chr11 80780198 80780287 -41063569 - L3 LINE CR1 -2010 2479 2393 5 1201 423 255 102 41 chr11 80780341 80780488 -41063368 - MER103 DNA DNA -2 164 9 5 1201 348 211 52 72 chr11 80780787 80780884 -41062972 - L3 LINE CR1 -2240 2249 2155 5 1201 331 291 138 29 chr11 80781036 80781174 -41062682 - MIRb SINE MIR -109 159 7 5 1201 324 252 34 34 chr11 80781963 80782082 -41061774 - MER3 DNA MER1_type -10 199 81 5 1201 1379 255 25 36 chr11 80783496 80783854 -41060002 + ORR1C1 LTR MaLR 25 378 0 5 1201 1093 214 30 7 chr11 80783854 80784127 -41059729 + ORR1C1-int LTR MaLR 1 235 -1274 5 1201 316 278 35 69 chr11 80784236 80784352 -41059504 - MLT1D LTR MaLR -282 223 112 5 1201 1461 53 11 0 chr11 80785793 80785980 -41057876 - B2_Mm1t SINE B2 -3 190 2 5 1201 181 175 125 0 chr11 80786058 80786098 -41057758 - L4 LINE RTE -961 1068 1024 5 1201 2002 96 120 0 chr11 80786168 80786459 -41057397 + ORR1A2 LTR MaLR 1 326 -1 5 1201 183 340 87 34 chr11 80786630 80786779 -41057077 + L2 LINE L2 2800 2956 -463 5 1201 366 368 52 21 chr11 80787263 80787457 -41056399 + MIRc SINE MIR 18 217 -51 5 1201 245 321 170 4 chr11 80787819 80787967 -41055889 - MIRc SINE MIR -69 199 19 5 1201 260 200 0 110 chr11 80789373 80789446 -41054410 + RMER15 LTR ERVL 13 77 -498 5 1201 1737 203 134 34 chr11 80789464 80789963 -41053893 + RMER15 LTR ERVL 27 575 0 5 1201 402 21 0 0 chr11 80790378 80790425 -41053431 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 5 1201 260 323 125 22 chr11 80792139 80792275 -41051581 - MIRb SINE MIR -94 174 25 5 1201 324 282 32 11 chr11 80792450 80792583 -41051273 - MIR3 SINE MIR -54 154 21 5 1201 883 234 18 156 chr11 80793452 80793791 -41050065 + B4A SINE B4 1 292 0 5 1201 693 144 0 0 chr11 80793791 80793923 -41049933 + (CA)n Simple_repeat Simple_repeat 1 132 0 6 1201 182 302 136 17 chr11 80794081 80794199 -41049657 - MIRb SINE MIR -41 227 96 6 1201 644 271 183 35 chr11 80794275 80794592 -41049264 + L1MA7 LINE L1 5926 6289 -2 6 1201 2724 194 60 11 chr11 80794855 80795295 -41048561 + RLTR20B1 LTR ERVK 1 456 -107 6 1201 243 0 0 0 chr11 80795295 80795322 -41048534 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1201 2724 194 60 11 chr11 80795322 80795417 -41048439 + RLTR20B1 LTR ERVK 457 561 -2 6 1201 199 342 27 0 chr11 80795845 80795885 -41047971 + L2a LINE L2 3341 3415 -11 6 1201 200 121 61 0 chr11 80795885 80795918 -41047938 + MIRm SINE MIR 233 267 -9 6 1201 1412 286 77 16 chr11 80796156 80796930 -41046926 + Lx8 LINE L1 6608 7473 0 6 1201 510 267 108 48 chr11 80797462 80797730 -41046126 - L1MA7 LINE L1 -39 6252 5969 6 1201 1731 241 84 43 chr11 80797731 80798130 -41045726 + L1MA7 LINE L1 5364 5782 -509 6 1201 345 82 0 0 chr11 80798130 80798179 -41045677 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 6 1201 1731 241 84 43 chr11 80798179 80798359 -41045497 + L1MA7 LINE L1 5783 5967 -324 6 1201 667 213 28 0 chr11 80798599 80798740 -41045116 - B1_Mur1 SINE Alu 0 149 5 6 1201 733 228 10 82 chr11 80799660 80799866 -41043990 + B3A SINE B2 3 193 -5 6 1201 206 273 61 0 chr11 80800648 80800714 -41043142 - MIRb SINE MIR -96 172 103 6 1201 294 285 148 26 chr11 80800792 80800947 -41042909 + MIRm SINE MIR 41 214 -62 6 1201 191 281 70 0 chr11 80801316 80801373 -41042483 - L4 LINE RTE -264 1765 1705 6 1201 238 339 59 29 chr11 80803193 80803363 -41040493 + L3 LINE CR1 4073 4247 -242 6 1201 345 24 0 0 chr11 80803446 80803488 -41040368 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1201 227 352 55 31 chr11 80803652 80803787 -41040069 + MIRc SINE MIR 32 175 -33 6 1201 436 290 52 68 chr11 80804077 80804379 -41039477 + B4A SINE B4 3 275 -17 6 1201 333 0 0 0 chr11 80804404 80804441 -41039415 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1201 495 0 0 0 chr11 80805315 80805370 -41038486 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1201 769 229 139 60 chr11 80805387 80805638 -41038218 - B4 SINE B4 -18 274 4 6 1201 610 206 0 27 chr11 80806029 80806214 -41037642 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1201 5445 49 10 1 chr11 80808343 80809014 -41034842 + L1Md_F2 LINE L1 5906 6582 0 6 1201 358 328 134 62 chr11 80809125 80809557 -41034299 + L2b LINE L2 2924 3386 -1 6 1201 638 281 104 22 chr11 80810559 80810606 -41033250 - B4A SINE B4 0 292 234 6 1201 942 237 9 24 chr11 80810606 80810818 -41033038 - B3 SINE B2 -6 210 2 6 1201 638 281 104 22 chr11 80810818 80811039 -41032817 - B4A SINE B4 -59 233 2 6 1201 623 244 132 90 chr11 80811237 80811525 -41032331 - Lx8 LINE L1 -9 7464 7165 6 1201 270 159 157 14 chr11 80811526 80811596 -41032260 + MER103 DNA DNA 42 121 -45 6 1201 506 298 72 0 chr11 80812181 80812389 -41031467 + ID_B1 SINE B4 2 224 0 6 1201 1778 171 12 130 chr11 80813543 80813973 -41029883 - MTE2a LTR MaLR 0 379 1 6 1201 522 0 0 0 chr11 80814043 80814101 -41029755 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1201 432 0 0 0 chr11 80815030 80815078 -41028778 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1201 903 264 15 5 chr11 80815920 80816122 -41027734 + MTEa LTR MaLR 176 379 0 6 1201 1103 309 186 18 chr11 80817148 80817698 -41026158 + Lx8 LINE L1 6556 7197 -276 6 1201 6800 45 0 0 chr11 80817972 80818772 -41025084 + L1_Mus1 LINE L1 5768 6567 0 6 1201 302 288 88 64 chr11 80820001 80820172 -41023684 - MIR SINE MIR -14 248 74 6 1201 589 160 0 16 chr11 80820712 80820839 -41023017 + GA-rich Low_complexity Low_complexity 2 126 0 6 1201 448 340 89 16 chr11 80822264 80822455 -41021401 + Tigger5 DNA MER2_type 43 247 -2159 6 1201 570 272 13 6 chr11 80822450 80822609 -41021247 + Tigger5 DNA MER2_type 2173 2332 -74 6 1201 231 114 0 0 chr11 80822668 80822703 -41021153 + (ATG)n Simple_repeat Simple_repeat 1 35 0 6 1201 707 274 118 0 chr11 80822703 80822915 -41020941 - B4A SINE B4 -46 246 10 6 1201 342 0 0 0 chr11 80823311 80823349 -41020507 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 6 1201 684 45 0 0 chr11 80823945 80824033 -41019823 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1201 670 256 131 0 chr11 80824564 80824755 -41019101 - ID_B1 SINE B4 -5 219 4 6 1201 379 287 82 0 chr11 80825185 80825316 -41018540 - MIRc SINE MIR -73 195 49 6 1201 286 365 102 13 chr11 80825374 80825610 -41018246 + MIR SINE MIR 1 257 -5 6 1201 32 26 0 0 chr11 80825615 80825654 -41018202 + AT_rich Low_complexity Low_complexity 1 39 0 6 1201 1125 283 42 81 chr11 80825843 80826201 -41017655 + MER2 DNA MER2_type 2 345 0 6 1201 307 196 42 32 chr11 80826527 80826622 -41017234 - L1M5 LINE L1 -652 5472 5377 6 1201 414 0 0 0 chr11 80826975 80827021 -41016835 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1201 342 302 123 0 chr11 80827894 80828056 -41015800 - MIRb SINE MIR -62 206 25 6 1201 893 213 85 0 chr11 80828934 80829122 -41014734 + B3 SINE B2 4 207 -9 6 1201 2895 25 0 21 chr11 80829183 80829517 -41014339 + IAPLTR2b LTR ERVK 1 327 0 6 1201 238 188 92 15 chr11 80829529 80829594 -41014262 + MIRb SINE MIR 14 83 -185 6 1201 251 267 16 32 chr11 80829629 80829691 -41014165 + MER5B DNA MER1_type 3 63 -115 6 1201 235 250 75 68 chr11 80829672 80829818 -41014038 + Charlie7a DNA MER1_type 105 251 -21 6 1201 582 293 136 57 chr11 80829781 80830045 -41013811 - B4A SINE B4 0 292 8 6 1201 243 0 0 0 chr11 80830051 80830078 -41013778 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1201 314 279 159 53 chr11 80830431 80830841 -41013015 + L2a LINE L2 2930 3426 0 6 1201 210 71 0 0 chr11 80830841 80830869 -41012987 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 6 1201 197 283 252 0 chr11 80831142 80831241 -41012615 - MIR SINE MIR -111 151 28 6 1201 262 383 11 11 chr11 80831655 80831750 -41012106 + MIR SINE MIR 31 125 -137 6 1201 835 219 104 5 chr11 80831909 80832102 -41011754 + B3 SINE B2 1 212 -4 6 1201 479 223 10 0 chr11 80832124 80832227 -41011629 - Charlie20a DNA Charlie -284 523 420 6 1201 282 389 15 8 chr11 80832262 80832394 -41011462 + ORR1E LTR MaLR 59 191 -168 6 1201 375 23 0 0 chr11 80832577 80832621 -41011235 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1201 183 42 0 0 chr11 80832721 80832745 -41011111 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1201 530 281 53 25 chr11 80832748 80833087 -41010769 + Charlie20a DNA Charlie 426 807 0 6 1201 972 212 13 26 chr11 80833118 80833358 -41010498 + MTD LTR MaLR 12 245 -176 6 1201 8767 89 129 7 chr11 80833358 80834197 -41009659 + L1VL2 LINE L1 135 1096 -2519 6 1201 1389 91 11 0 chr11 80834197 80834384 -41009472 + B2_Mm1t SINE B2 1 189 -4 6 1201 8767 72 16 11 chr11 80834384 80835449 -41008407 + L1VL2 LINE L1 1097 2169 -1446 6 1201 6470 93 98 14 chr11 80835445 80836526 -41007330 + Lx LINE L1 5331 6508 -146 6 1201 198 0 0 0 chr11 80836526 80836548 -41007308 + (TGGG)n Simple_repeat Simple_repeat 2 23 0 6 1201 6470 85 109 17 chr11 80836548 80836670 -41007186 + Lx LINE L1 6509 6652 -2 6 1201 240 86 0 0 chr11 80836688 80836723 -41007133 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1201 953 191 63 29 chr11 80836724 80836929 -41006927 + MTD LTR MaLR 208 419 0 6 1201 232 289 135 16 chr11 80836953 80837080 -41006776 - MIR SINE MIR -59 149 3 6 1201 2699 86 75 3 chr11 80837130 80837503 -41006353 - MTB LTR MaLR 0 400 1 6 1201 218 277 188 43 chr11 80838077 80838194 -41005662 + MIR SINE MIR 41 174 -94 6 1201 1127 60 0 0 chr11 80838573 80838707 -41005149 + B1_Mm SINE Alu 2 135 -12 6 1201 193 171 0 0 chr11 80839174 80839209 -41004647 - MIRm SINE MIR -11 265 231 6 1201 197 382 107 94 chr11 80839227 80839611 -41004245 + L2b LINE L2 2971 3359 -16 6 1201 252 182 0 22 chr11 80839574 80839619 -41004237 + MIR SINE MIR 217 260 -2 6 1201 1278 177 29 0 chr11 80839767 80839976 -41003880 - B3 SINE B2 0 216 2 6 1201 208 145 0 52 chr11 80840139 80840197 -41003659 + CT-rich Low_complexity Low_complexity 4 58 0 6 1201 213 293 11 79 chr11 80840197 80840286 -41003570 - ID4 SINE ID 0 83 1 6 1201 432 0 0 0 chr11 80841940 80841988 -41001868 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1201 257 271 35 53 chr11 80842650 80842763 -41001093 - B3 SINE B2 0 216 106 6 1201 1087 288 18 11 chr11 80842708 80842992 -41000864 - B4A SINE B4 -4 288 3 6 1201 685 297 44 6 chr11 80843239 80843422 -41000434 - B3 SINE B2 0 216 27 6 1201 3917 287 50 14 chr11 80843879 80845167 -40998689 + Lx8 LINE L1 6110 7444 -29 6 1201 249 318 72 9 chr11 80845216 80845327 -40998529 - MIR3 SINE MIR -37 171 54 6 1201 182 350 67 0 chr11 80845443 80845503 -40998353 - L2c LINE L2 -44 3343 3280 6 1201 414 341 8 0 chr11 80845849 80845981 -40997875 - MIRb SINE MIR -123 145 13 6 1201 472 260 161 39 chr11 80847088 80847342 -40996514 - B4A SINE B4 -6 286 2 6 1201 2606 138 0 24 chr11 80847731 80848148 -40995708 + MTB_Mm LTR MaLR 1 407 0 6 1201 897 276 165 7 chr11 80848325 80848431 -40995425 - ORR1E LTR MaLR 0 359 236 6 1201 276 30 0 0 chr11 80848431 80848464 -40995392 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1201 897 276 165 7 chr11 80848464 80848660 -40995196 - ORR1E LTR MaLR -124 235 9 6 1201 468 0 0 0 chr11 80848737 80848789 -40995067 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1201 243 289 99 63 chr11 80848856 80848967 -40994889 + MLT1A0 LTR MaLR 251 365 0 6 1201 289 310 8 65 chr11 80849406 80849418 -40994438 - PB1D10 SINE Alu 0 117 107 6 1201 198 0 0 0 chr11 80849418 80849440 -40994416 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1201 685 234 158 49 chr11 80849440 80849682 -40994174 - B4A SINE B4 -18 274 6 7 1201 289 310 8 65 chr11 80849682 80849797 -40994059 - PB1D10 SINE Alu -11 106 2 6 1201 280 310 50 0 chr11 80850665 80850765 -40993091 + L2c LINE L2 3263 3367 -20 7 1201 220 319 32 21 chr11 80850772 80850865 -40992991 - MIRc SINE MIR -44 224 131 7 1201 215 312 25 25 chr11 80852175 80852254 -40991602 + L2c LINE L2 3087 3165 -222 7 1201 611 67 11 0 chr11 80852277 80852366 -40991490 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1201 1107 235 52 62 chr11 80852381 80852435 -40991421 - B4A SINE B4 -4 288 225 7 1201 657 227 14 28 chr11 80852435 80852580 -40991276 - B1_Mur1 SINE Alu -4 145 3 7 1201 1107 235 52 62 chr11 80852580 80852797 -40991059 - B4A SINE B4 -68 224 20 7 1201 184 336 18 10 chr11 80854406 80854531 -40989325 - MIRm SINE MIR -109 167 35 7 1201 276 358 52 7 chr11 80855251 80855386 -40988470 + MIRb SINE MIR 35 175 -93 7 1201 242 294 41 68 chr11 80855464 80855610 -40988246 - MIR3 SINE MIR -42 166 25 7 1201 329 294 58 32 chr11 80856586 80856737 -40987119 - MLT1L LTR MaLR 0 610 415 7 1201 1106 122 0 6 chr11 80856868 80857049 -40986807 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 1201 407 352 29 44 chr11 80857319 80857524 -40986332 - MER58A DNA MER1_type -1 223 22 7 1201 503 280 102 89 chr11 80857580 80857941 -40985915 + L1ME2 LINE L1 795 1160 -5240 7 1201 262 286 111 0 chr11 80857983 80858119 -40985737 + L1ME2 LINE L1 1523 1710 -4705 7 1201 411 300 183 24 chr11 80858157 80858403 -40985453 + L1ME2 LINE L1 1689 1973 -4427 7 1201 513 172 23 34 chr11 80858673 80858848 -40985008 + CT-rich Low_complexity Low_complexity 3 175 0 7 1201 293 254 17 0 chr11 80859062 80859121 -40984735 + ID4 SINE ID 24 83 0 7 1201 570 248 70 25 chr11 80859143 80859300 -40984556 + MER20 DNA MER1_type 54 217 -2 7 1201 926 287 59 4 chr11 80859360 80859615 -40984241 + B4A SINE B4 2 270 -22 7 1201 477 0 0 0 chr11 80859650 80859703 -40984153 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1201 348 88 0 0 chr11 80859703 80859759 -40984097 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 7 1201 216 185 0 0 chr11 80859798 80859852 -40984004 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1201 350 316 26 0 chr11 80859887 80860001 -40983855 + PB1D10 SINE Alu 1 117 0 7 1201 373 251 81 65 chr11 80860011 80860271 -40983585 + L1ME2 LINE L1 2174 2437 -3963 7 1201 5567 175 46 37 chr11 80860569 80861621 -40982235 + RMER1B Other Other 2 1062 -4 7 1201 297 350 129 9 chr11 80862306 80862638 -40981218 + L1ME2 LINE L1 2416 2787 -3532 7 1201 299 296 0 0 chr11 80862856 80862927 -40980929 - ID4_ SINE ID -11 72 2 7 1201 2024 184 68 13 chr11 80862960 80862974 -40980882 + MTD LTR MaLR 1 14 -405 7 1201 243 0 0 0 chr11 80862974 80863001 -40980855 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1201 2024 184 68 13 chr11 80863001 80863383 -40980473 + MTD LTR MaLR 15 419 0 7 1201 1173 295 62 9 chr11 80863537 80864085 -40979771 + L1ME2 LINE L1 4219 4795 -1524 7 1201 432 250 23 68 chr11 80864090 80864223 -40979633 - ID_B1 SINE B4 -3 221 95 7 1201 428 35 17 0 chr11 80864254 80864312 -40979544 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1201 711 307 36 33 chr11 80864320 80864596 -40979260 - B4A SINE B4 -13 279 3 7 1201 666 274 74 94 chr11 80864677 80865176 -40978680 + L1ME2 LINE L1 5802 6290 -47 7 1201 330 316 8 0 chr11 80865677 80865810 -40978046 + L1MA5 LINE L1 6167 6300 0 7 1201 658 296 63 49 chr11 80866081 80866365 -40977491 + Charlie26a DNA MER1_type 36 323 -2 7 1201 309 333 10 10 chr11 80867190 80867287 -40976569 - B4 SINE B4 -187 105 9 7 1201 246 303 10 0 chr11 80868347 80868446 -40975410 + L1MA6 LINE L1 6178 6277 -23 7 1201 623 255 124 27 chr11 80868476 80868551 -40975305 + B4A SINE B4 4 92 -200 7 1201 312 27 0 0 chr11 80868551 80868588 -40975268 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1201 623 255 124 27 chr11 80868588 80868770 -40975086 + B4A SINE B4 93 286 -6 7 1201 234 358 124 41 chr11 80869885 80870054 -40973802 + MER115 DNA Tip100 1 183 -510 7 1201 931 289 70 67 chr11 80870056 80870412 -40973444 + ORR1E LTR MaLR 3 359 0 7 1201 360 347 133 31 chr11 80870414 80870610 -40973246 + MER115 DNA Tip100 179 394 -299 7 1201 234 0 0 0 chr11 80870676 80870702 -40973154 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 7 1201 427 311 33 26 chr11 80870746 80870898 -40972958 + MER115 DNA Tip100 539 691 -2 7 1201 291 348 62 43 chr11 80870904 80871066 -40972790 + MIR SINE MIR 97 261 -1 7 1202 1142 252 21 114 chr11 80872093 80872538 -40971318 + MTE2a LTR MaLR 1 418 -1 7 1202 683 314 141 73 chr11 80873177 80873999 -40969857 + L2a LINE L2 2275 3146 -280 7 1202 2059 237 28 11 chr11 80874276 80874817 -40969039 + MYSERV16_I-int LTR ERVK 1113 1662 -664 7 1202 320 325 140 62 chr11 80875720 80875774 -40968082 + MLT1K LTR MaLR 209 269 -326 7 1202 342 67 0 0 chr11 80875774 80875819 -40968037 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1202 320 325 140 62 chr11 80875819 80876121 -40967735 + MLT1K LTR MaLR 270 593 -2 7 1202 956 199 77 5 chr11 80876168 80876375 -40967481 - URR1A DNA MER1_type 0 226 5 7 1202 232 222 0 89 chr11 80877172 80877251 -40966605 + L1M3de LINE L1 17 88 -6565 7 1202 255 296 63 25 chr11 80877519 80877645 -40966211 - MIRb SINE MIR -7 261 119 7 1202 529 319 52 42 chr11 80878117 80878330 -40965526 - B4 SINE B4 -14 278 64 7 1202 266 368 9 19 chr11 80878766 80878874 -40964982 - MIRc SINE MIR -63 205 99 7 1202 859 361 83 24 chr11 80879092 80879549 -40964307 + LTR16C LTR ERVL 5 488 -1 7 1202 183 80 0 0 chr11 80880000 80880025 -40963831 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 7 1202 279 146 0 0 chr11 80880035 80880076 -40963780 - ID4 SINE ID -40 43 3 7 1202 310 306 16 47 chr11 80880095 80880222 -40963634 - ID_B1 SINE B4 -10 214 92 7 1202 206 291 44 44 chr11 80880238 80880328 -40963528 + L2b LINE L2 3056 3145 -230 7 1202 450 296 5 125 chr11 80881039 80881263 -40962593 - RMER30 DNA MER1_type -1 201 5 7 1202 678 292 58 24 chr11 80881273 80881480 -40962376 - MER20 DNA MER1_type 0 219 6 7 1202 181 273 36 18 chr11 80881523 80881579 -40962277 + L2b LINE L2 3327 3383 -4 7 1202 285 377 79 18 chr11 80883022 80883187 -40960669 + MER63B DNA AcHobo 262 436 0 7 1202 207 233 79 97 chr11 80883793 80883907 -40959949 - MIR SINE MIR -78 184 73 7 1202 753 293 70 27 chr11 80883938 80884269 -40959587 + MLT1D LTR MaLR 134 505 0 7 1202 856 291 58 17 chr11 80884296 80884656 -40959200 + L1MA4 LINE L1 5556 5930 -370 7 1202 2545 155 17 19 chr11 80884712 80885134 -40958722 + MTC LTR MaLR 1 421 0 7 1202 1441 227 71 42 chr11 80885206 80885560 -40958296 + ORR1D2 LTR MaLR 4 367 -3 7 1202 189 0 0 0 chr11 80886482 80886503 -40957353 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 7 1202 761 187 29 22 chr11 80886571 80886708 -40957148 - B1_Mur1 SINE Alu 0 149 12 7 1202 1513 174 15 11 chr11 80886712 80886974 -40956882 + Lx5 LINE L1 6741 7003 -47 7 1202 941 232 73 172 chr11 80887157 80887569 -40956287 - MTE2a LTR MaLR -6 373 3 7 1202 281 237 24 106 chr11 80888383 80888468 -40955388 - MER5A DNA MER1_type -104 85 8 7 1202 207 333 77 29 chr11 80888562 80888732 -40955124 - MIRb SINE MIR -73 195 18 7 1202 291 28 0 0 chr11 80889256 80889292 -40954564 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1202 2042 203 64 42 chr11 80890131 80890629 -40953227 + RLTR11A2 LTR ERVK 19 527 0 7 1202 972 292 52 45 chr11 80891339 80891399 -40952457 + B4A SINE B4 2 69 -223 7 1202 2457 140 5 18 chr11 80891399 80891798 -40952058 - ORR1B1 LTR MaLR 0 394 1 7 1202 972 292 52 45 chr11 80891798 80892024 -40951832 + B4A SINE B4 70 290 -2 7 1202 279 0 0 0 chr11 80892065 80892096 -40951760 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1202 344 363 79 14 chr11 80892387 80892602 -40951254 + MIRb SINE MIR 10 238 -30 7 1202 795 253 57 178 chr11 80893254 80893586 -40950270 + B4A SINE B4 1 292 0 7 1202 837 79 0 0 chr11 80894767 80894881 -40948975 + (TG)n Simple_repeat Simple_repeat 2 115 0 7 1202 375 153 7 65 chr11 80894899 80895053 -40948803 + (CAGA)n Simple_repeat Simple_repeat 1 145 0 7 1202 3338 265 106 38 chr11 80895559 80895695 -40948161 + Lx9 LINE L1 6158 6285 -1359 7 1202 279 0 0 0 chr11 80895695 80895726 -40948130 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1202 3338 265 106 38 chr11 80895726 80896340 -40947516 + Lx9 LINE L1 6286 6947 -697 7 1202 324 0 0 0 chr11 80896340 80896376 -40947480 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1202 3338 265 106 38 chr11 80896376 80896985 -40946871 + Lx9 LINE L1 6948 7610 -34 7 1202 860 310 84 18 chr11 80897339 80897733 -40946123 + L1MB8 LINE L1 5759 6178 0 7 1202 183 129 0 0 chr11 80898220 80898251 -40945605 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1202 243 88 0 0 chr11 80899186 80899220 -40944636 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 7 1202 240 295 66 0 chr11 80899502 80899563 -40944293 + MTEa LTR MaLR 8 72 -307 7 1202 640 306 53 76 chr11 80899579 80899923 -40943933 + MT2A LTR ERVL 145 470 -63 7 1202 449 240 178 13 chr11 80899934 80900086 -40943770 + MIR SINE MIR 50 226 -36 7 1202 397 295 81 73 chr11 80901357 80901617 -40942239 - MER33 DNA MER1_type -41 283 22 7 1202 401 379 40 10 chr11 80901961 80902161 -40941695 - MIR SINE MIR -31 231 26 7 1202 316 335 72 44 chr11 80902400 80902581 -40941275 + L1MB5 LINE L1 5979 6164 -10 7 1202 759 154 18 0 chr11 80903577 80903746 -40940110 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 7 1202 213 295 74 37 chr11 80904390 80904471 -40939385 + MIR3 SINE MIR 87 170 -38 7 1202 234 232 0 0 chr11 80904539 80904602 -40939254 + L3b LINE CR1 4424 4492 -16 7 1202 303 352 22 8 chr11 80905019 80905166 -40938690 + MIRc SINE MIR 13 163 -105 7 1202 549 0 0 0 chr11 80905346 80905407 -40938449 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1202 232 286 0 0 chr11 80905650 80905706 -40938150 + MIRb SINE MIR 30 85 -183 7 1202 454 292 17 17 chr11 80906045 80906160 -40937696 - ID_B1 SINE B4 -26 198 84 7 1202 415 296 0 62 chr11 80906337 80906481 -40937375 + MLT1A LTR MaLR 239 373 -1 7 1202 361 313 17 9 chr11 80906920 80907036 -40936820 - Charlie2b DNA MER1_type -2665 117 1 7 1202 182 200 0 62 chr11 80907038 80907086 -40936770 + L3 LINE CR1 4440 4484 -5 7 1202 357 122 40 0 chr11 80907156 80907230 -40936626 + G-rich Low_complexity Low_complexity 5 81 0 8 1202 774 302 42 45 chr11 80907694 80907982 -40935874 - B4A SINE B4 0 292 6 8 1202 483 33 0 0 chr11 80907982 80908043 -40935813 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1202 502 301 34 23 chr11 80908705 80908964 -40934892 - MLT1A0 LTR MaLR -2 372 47 8 1202 362 314 8 39 chr11 80908965 80909094 -40934762 - RMER30 DNA MER1_type -3 199 75 8 1202 381 313 11 104 chr11 80908987 80909169 -40934687 + Charlie12 DNA MER1_type 26 190 -2683 8 1202 372 338 54 101 chr11 80910220 80910378 -40933478 + MLT1B LTR MaLR 59 208 -182 8 1202 1205 41 0 20 chr11 80910378 80910520 -40933336 + B1_Mus2 SINE Alu 2 141 -6 8 1202 246 32 0 0 chr11 80910520 80910551 -40933305 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1202 372 338 54 101 chr11 80910557 80910734 -40933122 + MLT1B LTR MaLR 209 378 -12 8 1202 242 315 168 25 chr11 80910956 80911158 -40932698 + MIRb SINE MIR 8 238 -30 8 1202 340 342 51 19 chr11 80911283 80911441 -40932415 - MIR SINE MIR -43 219 57 8 1202 455 289 32 19 chr11 80912081 80912253 -40931603 + L2a LINE L2 3194 3425 -1 8 1202 3303 51 2 2 chr11 80913151 80913547 -40930309 + MTA_Mm LTR MaLR 1 396 0 8 1202 204 149 0 0 chr11 80914772 80914819 -40929037 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1202 390 195 0 0 chr11 80915436 80915518 -40928338 + (CA)n Simple_repeat Simple_repeat 2 83 0 8 1202 411 219 41 10 chr11 80915713 80915810 -40928046 + MER113 DNA MER1_type 348 447 -74 8 1202 261 186 0 0 chr11 80916290 80916333 -40927523 + (TATG)n Simple_repeat Simple_repeat 2 44 0 8 1202 660 213 0 0 chr11 80916334 80916588 -40927268 + (TG)n Simple_repeat Simple_repeat 1 254 0 8 1202 722 251 62 105 chr11 80916590 80916848 -40927008 - B4A SINE B4 0 292 46 8 1202 890 156 204 51 chr11 80916890 80917086 -40926770 - URR1A DNA MER1_type 0 226 1 8 1202 415 333 22 22 chr11 80917105 80917243 -40926613 + MIR3 SINE MIR 29 166 -42 8 1202 235 289 140 30 chr11 80917786 80917886 -40925970 + MIR3 SINE MIR 15 125 -83 8 1202 1160 83 0 0 chr11 80918494 80918638 -40925218 + B1_Mus2 SINE Alu 4 147 0 8 1202 622 195 61 24 chr11 80918957 80919097 -40924759 + ID_B1 SINE B4 90 231 -61 8 1202 187 203 100 17 chr11 80919350 80919410 -40924446 + MIR SINE MIR 191 255 -7 8 1202 721 315 70 50 chr11 80919723 80919796 -40924060 + ORSL-2b DNA Tip100 1 71 -437 8 1202 455 48 16 0 chr11 80919796 80919858 -40923998 + (CATA)n Simple_repeat Simple_repeat 4 66 0 8 1202 721 315 70 50 chr11 80919858 80920182 -40923674 + ORSL-2b DNA Tip100 72 406 -102 8 1202 375 23 0 0 chr11 80920229 80920273 -40923583 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1202 225 224 0 0 chr11 80920610 80920668 -40923188 + (TCTG)n Simple_repeat Simple_repeat 3 60 0 8 1202 420 262 0 0 chr11 80920654 80920795 -40923061 + (TCCA)n Simple_repeat Simple_repeat 4 144 0 8 1202 953 226 33 9 chr11 80920851 80921061 -40922795 - ID_B1 SINE B4 -8 216 2 8 1202 453 261 112 9 chr11 80921699 80921843 -40922013 + B4A SINE B4 124 284 -8 8 1202 450 0 0 0 chr11 80921870 80921920 -40921936 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1202 392 306 108 32 chr11 80922515 80922701 -40921155 - MIRb SINE MIR -28 240 41 8 1202 229 154 26 0 chr11 80922900 80922939 -40920917 + MT2A LTR ERVL 1 40 -493 8 1202 953 204 92 61 chr11 80922905 80923166 -40920690 + MTD LTR MaLR 6 274 -145 8 1202 251 270 52 39 chr11 80923231 80923308 -40920548 - MIRc SINE MIR -120 148 71 8 1202 301 237 288 0 chr11 80923776 80923894 -40919962 + RSINE1 SINE B4 2 153 -12 8 1202 550 0 29 0 chr11 80924773 80924843 -40919013 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1202 264 298 27 55 chr11 80925882 80925992 -40917864 + L2b LINE L2 3056 3162 -213 8 1202 250 330 39 20 chr11 80926423 80926458 -40917398 + B4 SINE B4 49 85 -207 8 1202 333 227 3 1 chr11 80926458 80926542 -40917314 + PB1D7 SINE Alu 2 84 -230 8 1202 747 94 0 0 chr11 80926624 80926751 -40917105 + (GA)n Simple_repeat Simple_repeat 2 128 0 8 1202 653 237 29 0 chr11 80926760 80926899 -40916957 - B3A SINE B2 -54 144 2 8 1202 398 338 15 7 chr11 80927332 80927469 -40916387 - RSINE1 SINE B4 -1 164 27 8 1202 439 307 0 0 chr11 80927473 80927574 -40916282 - ID_B1 SINE B4 -40 184 84 8 1202 419 354 84 34 chr11 80927576 80927839 -40916017 + L1MC4a LINE L1 5622 5897 -1985 8 1202 332 247 26 0 chr11 80928020 80928097 -40915759 + BC1_Mm scRNA scRNA 15 93 -59 8 1202 340 284 47 16 chr11 80928736 80928865 -40914991 - MIR3 SINE MIR -61 147 15 8 1202 378 326 66 0 chr11 80929013 80929213 -40914643 + MIR SINE MIR 34 255 -7 8 1202 188 340 0 0 chr11 80929228 80929278 -40914578 - MIRb SINE MIR -36 232 183 8 1202 183 340 63 73 chr11 80929524 80929730 -40914126 - L2a LINE L2 -269 3157 2954 8 1202 328 320 19 15 chr11 80929785 80929910 -40913946 - MIRb SINE MIR -150 126 5 8 1202 848 198 3 0 chr11 80929988 80930333 -40913523 + (TG)n Simple_repeat Simple_repeat 1 346 0 8 1202 180 281 94 0 chr11 80931088 80931152 -40912704 - MER5A DNA MER1_type -118 71 2 8 1202 266 0 29 0 chr11 80932061 80932095 -40911761 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1202 706 308 25 33 chr11 80932645 80932723 -40911133 - MER2 DNA MER2_type 0 345 269 8 1202 3753 84 124 7 chr11 80932723 80933261 -40910595 + MT2B LTR ERVL 1 601 0 8 1202 706 308 25 33 chr11 80933261 80933424 -40910432 - MER2 DNA MER2_type -77 268 106 8 1202 193 197 16 16 chr11 80934109 80934171 -40909685 + GA-rich Low_complexity Low_complexity 3 64 0 8 1202 194 256 53 53 chr11 80934866 80934961 -40908895 + L2b LINE L2 3241 3335 -40 8 1202 190 138 0 0 chr11 80935755 80935784 -40908072 + L2a LINE L2 3371 3399 -27 8 1202 491 279 25 49 chr11 80935838 80936000 -40907856 - MIRb SINE MIR -42 226 69 8 1202 218 32 32 0 chr11 80936843 80936874 -40906982 + (CGTG)n Simple_repeat Simple_repeat 1 32 0 8 1202 26 0 0 0 chr11 80937038 80937064 -40906792 + AT_rich Low_complexity Low_complexity 1 26 0 8 1202 216 0 0 0 chr11 80937866 80937890 -40905966 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1202 269 350 33 8 chr11 80938792 80938913 -40904943 + MLT1N2 LTR MaLR 437 560 -2 8 1202 229 352 14 7 chr11 80938923 80939066 -40904790 + (TCCA)n Simple_repeat Simple_repeat 3 146 0 8 1202 439 122 11 11 chr11 80939085 80939176 -40904680 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 8 1202 475 364 0 17 chr11 80939206 80939385 -40904471 + (CCCA)n Simple_repeat Simple_repeat 3 178 0 8 1202 683 191 6 0 chr11 80939387 80939549 -40904307 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 8 1202 448 207 21 0 chr11 80939569 80939714 -40904142 + (TCCA)n Simple_repeat Simple_repeat 3 150 0 8 1202 444 333 21 48 chr11 80940064 80940253 -40903603 - MIRb SINE MIR -84 184 1 8 1202 207 197 57 57 chr11 80940253 80940317 -40903539 + MIRm SINE MIR 113 176 -100 8 1202 1370 105 16 0 chr11 80940552 80940743 -40903113 - B2_Mm2 SINE B2 0 195 2 8 1202 232 195 0 0 chr11 80940854 80940895 -40902961 + URR1B DNA MER1_type 1 41 -184 8 1202 231 236 113 41 chr11 80940895 80940992 -40902864 - CYRA11_Mm Unknown Y-chromosome -324 293 190 8 1202 521 125 23 0 chr11 80940908 80940996 -40902860 + URR1B DNA MER1_type 121 210 -15 8 1202 339 224 0 0 chr11 80942222 80942289 -40901567 - MIRb SINE MIR -10 258 192 8 1202 205 248 158 60 chr11 80943128 80943261 -40900595 + L2c LINE L2 2843 2988 -431 8 1202 213 323 71 30 chr11 80943585 80943684 -40900172 + L2c LINE L2 3282 3384 -3 8 1202 284 284 12 0 chr11 80943750 80943831 -40900025 - ID4 SINE ID 0 83 2 8 1202 273 242 0 0 chr11 80943931 80944022 -40899834 + (CACCAT)n Simple_repeat Simple_repeat 1 91 0 8 1202 255 221 180 34 chr11 80944135 80944224 -40899632 - MIR SINE MIR -82 180 79 8 1202 214 221 127 42 chr11 80944908 80944979 -40898877 - MIRm SINE MIR -117 159 83 8 1202 295 348 82 6 chr11 80945093 80945252 -40898604 - MIRb SINE MIR -52 216 46 8 1202 355 315 76 38 chr11 80945800 80945932 -40897924 + MER5B DNA MER1_type 47 183 -6 8 1202 225 188 20 20 chr11 80946672 80946721 -40897135 + MIR SINE MIR 70 118 -90 8 1202 180 306 82 14 chr11 80947241 80947314 -40896542 + L2a LINE L2 3349 3426 0 8 1202 225 171 0 0 chr11 80947775 80947816 -40896040 + G-rich Low_complexity Low_complexity 1 41 0 8 1202 261 222 130 139 chr11 80947998 80948113 -40895743 + MER5A1 DNA MER1_type 1 114 -52 8 1202 278 317 207 0 chr11 80948378 80948523 -40895333 + MIRc SINE MIR 63 237 -31 8 1202 336 252 9 3 chr11 80949296 80949378 -40894478 + PB1 SINE Alu 3 86 -63 8 1202 256 258 45 0 chr11 80949458 80949524 -40894332 + B3A SINE B2 5 73 -125 8 1202 359 225 17 0 chr11 80949470 80949549 -40894307 + ID4 SINE ID 18 98 -54 8 1202 375 302 8 16 chr11 80949613 80949734 -40894122 - PB1D7 SINE Alu 0 120 1 8 1202 327 299 81 36 chr11 80950613 80950724 -40893132 + PB1D10 SINE Alu 2 117 0 8 1202 256 111 0 82 chr11 80950868 80950917 -40892939 + B2_Mm2 SINE B2 2 46 -149 8 1202 5727 25 3 0 chr11 80950917 80951592 -40892264 - L1Md_T LINE L1 -2074 3809 3133 8 1202 16337 15 0 1 chr11 80951593 80953443 -40890413 + L1Md_T LINE L1 3738 5586 -297 8 1202 8557 32 2 0 chr11 80953443 80954436 -40889420 + L1Md_T LINE L1 5587 6581 -1 8 1202 1169 65 20 0 chr11 80954438 80954591 -40889265 + B2_Mm2 SINE B2 33 188 -7 8 1202 424 295 80 91 chr11 80954635 80954935 -40888921 + ORR1E LTR MaLR 24 362 -12 8 1202 757 276 0 53 chr11 80956195 80956402 -40887454 - B3A SINE B2 0 198 3 8 1202 778 251 73 59 chr11 80956432 80956720 -40887136 - B4A SINE B4 0 292 1 8 1202 264 269 204 38 chr11 80956998 80957162 -40886694 - MIRb SINE MIR -61 207 9 8 1202 493 271 137 44 chr11 80957409 80957702 -40886154 - MLT1D LTR MaLR -6 499 180 8 1202 232 255 274 0 chr11 80957801 80957907 -40885949 - MLT1D LTR MaLR -359 146 12 8 1202 365 273 50 0 chr11 80958302 80958401 -40885455 + MER5A1 DNA MER1_type 1 104 -62 8 1202 201 134 0 0 chr11 80958714 80958751 -40885105 + MIR SINE MIR 104 140 -128 8 1202 421 351 70 18 chr11 80958841 80959070 -40884786 + MamRep434 DNA TcMar 93 333 -93 8 1202 256 288 122 35 chr11 80959382 80959497 -40884359 + MIRb SINE MIR 27 151 -117 9 1202 310 359 32 37 chr11 80960336 80960524 -40883332 + MIRb SINE MIR 14 200 -68 9 1202 382 208 0 0 chr11 80960621 80960693 -40883163 - MIR SINE MIR -12 250 179 9 1202 434 263 75 25 chr11 80961247 80961407 -40882449 + L2c LINE L2 3036 3203 -184 9 1202 252 300 56 65 chr11 80961745 80961852 -40882004 - MIRb SINE MIR -140 128 23 9 1202 285 310 73 52 chr11 80962491 80962641 -40881215 - L2b LINE L2 -4 3383 3253 9 1202 513 0 0 0 chr11 80962677 80962734 -40881122 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1202 450 0 0 0 chr11 80962830 80962880 -40880976 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1202 306 73 0 0 chr11 80962881 80962922 -40880934 + (GGGAGA)n Simple_repeat Simple_repeat 2 42 0 9 1202 494 53 25 58 chr11 80964542 80964662 -40879194 + (TTTTTG)n Simple_repeat Simple_repeat 3 118 0 9 1202 24 0 0 0 chr11 80965991 80966015 -40877841 + GC_rich Low_complexity Low_complexity 1 24 0 9 1202 31 26 0 0 chr11 80967141 80967179 -40876677 + GC_rich Low_complexity Low_complexity 1 38 0 9 1202 208 333 177 8 chr11 80968057 80968187 -40875669 - MIRb SINE MIR -103 165 14 9 1202 613 13 0 13 chr11 80968245 80968322 -40875534 - B1_Mm SINE Alu -1 146 71 9 1202 309 221 0 69 chr11 80968322 80968347 -40875509 - ID_B1 SINE B4 0 224 130 9 1202 260 275 30 42 chr11 80968886 80969053 -40874803 + (CATA)n Simple_repeat Simple_repeat 4 168 0 9 1202 348 200 0 0 chr11 80969110 80969185 -40874671 + CT-rich Low_complexity Low_complexity 3 77 0 9 1202 875 183 0 0 chr11 80969186 80969328 -40874528 - B1_Mus1 SINE Alu -6 142 1 9 1202 211 362 115 56 chr11 80969897 80970166 -40873690 + L2c LINE L2 3051 3335 -52 9 1202 1138 88 0 0 chr11 80970411 80970558 -40873298 - B1_Mm SINE Alu 0 147 1 9 1202 249 312 0 0 chr11 80970590 80970654 -40873202 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 9 1202 230 345 0 23 chr11 80970772 80970818 -40873038 - MIR SINE MIR -145 117 72 9 1202 1371 96 0 0 chr11 80970818 80970996 -40872860 + (GGA)n Simple_repeat Simple_repeat 1 179 -182 9 1202 1371 96 0 0 chr11 80971001 80971179 -40872677 + (GGA)n Simple_repeat Simple_repeat 180 361 0 9 1202 230 345 0 23 chr11 80971179 80971212 -40872644 - MIR SINE MIR -196 66 35 9 1202 313 80 100 0 chr11 80971388 80971438 -40872418 - L1_Mus2 LINE L1 0 6566 6512 9 1202 431 278 8 17 chr11 80971617 80971734 -40872122 - PB1D10 SINE Alu 0 117 2 9 1202 1524 151 29 4 chr11 80971754 80972000 -40871856 + ORR1C2 LTR MaLR 133 384 0 9 1202 4318 239 92 63 chr11 80972000 80973323 -40870533 + ORR1C2-int LTR MaLR 1 1361 -9 9 1202 2026 142 40 27 chr11 80973323 80973699 -40870157 + ORR1C2 LTR MaLR 4 384 0 9 1202 322 57 38 0 chr11 80974422 80974475 -40869381 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 9 1202 202 239 0 21 chr11 80974548 80974595 -40869261 + CT-rich Low_complexity Low_complexity 1 46 0 9 1202 227 294 0 0 chr11 80975270 80975321 -40868535 + ID4_ SINE ID 22 72 -11 9 1202 824 69 9 0 chr11 80975322 80975438 -40868418 + (CA)n Simple_repeat Simple_repeat 2 118 0 9 1202 345 24 0 0 chr11 80975438 80975479 -40868377 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1202 207 69 0 0 chr11 80975678 80975707 -40868149 + (ATGGTG)n Simple_repeat Simple_repeat 5 33 0 9 1202 261 261 200 8 chr11 80975756 80975876 -40867980 - MIR SINE MIR -106 156 14 9 1202 277 290 58 51 chr11 80977274 80977412 -40866444 - MIRc SINE MIR -77 191 53 9 1202 2613 182 67 35 chr11 80977441 80977897 -40865959 + RLTR20B3 LTR ERVK 21 470 -107 9 1202 450 0 0 0 chr11 80977897 80977947 -40865909 + (TC)n Simple_repeat Simple_repeat 2 51 0 9 1202 189 0 0 0 chr11 80977947 80977967 -40865889 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1202 2613 182 67 35 chr11 80977967 80978049 -40865807 + RLTR20B3 LTR ERVK 471 576 -1 9 1202 1675 233 64 55 chr11 80978890 80979476 -40864380 + RMER19A LTR ERVK 1 611 0 9 1202 659 268 85 65 chr11 80980063 80980415 -40863441 - ORR1E LTR MaLR 0 359 1 9 1202 26 0 0 0 chr11 80980726 80980752 -40863104 + AT_rich Low_complexity Low_complexity 1 26 0 9 1202 253 309 53 55 chr11 80980755 80980929 -40862927 - MIRb SINE MIR 0 262 90 9 1202 582 15 0 0 chr11 80981229 80981296 -40862560 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1202 769 186 6 11 chr11 80981308 80981487 -40862369 + GA-rich Low_complexity Low_complexity 3 180 0 9 1202 263 361 104 11 chr11 80981516 80981698 -40862158 + Tigger15a DNA TcMar 400 598 -117 9 1202 824 0 10 0 chr11 80982297 80982393 -40861463 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 9 1202 698 274 12 6 chr11 80983240 80983409 -40860447 + MIRb SINE MIR 84 253 -15 9 1202 228 306 0 75 chr11 80984120 80984187 -40859669 - MIR3 SINE MIR -37 171 110 9 1202 25 51 0 0 chr11 80984195 80984234 -40859622 + AT_rich Low_complexity Low_complexity 1 39 0 9 1202 797 250 115 32 chr11 80984276 80984528 -40859328 - B4A SINE B4 -16 276 4 9 1202 324 0 0 0 chr11 80985883 80985919 -40857937 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1202 645 96 0 0 chr11 80987436 80987530 -40856326 + (TG)n Simple_repeat Simple_repeat 1 94 0 9 1202 633 297 0 26 chr11 80987537 80987689 -40856167 - RSINE1 SINE B4 -15 150 3 9 1202 870 305 18 22 chr11 80987689 80987913 -40855943 - B4 SINE B4 -65 227 5 9 1202 224 380 97 0 chr11 80989102 80989215 -40854641 - MIRb SINE MIR -123 145 22 9 1202 924 233 226 30 chr11 80989268 80989596 -40854260 + MTD LTR MaLR 4 395 -24 9 1202 2476 214 49 28 chr11 80990124 80990692 -40853164 - RMER1B Other Other 0 1066 487 9 1202 552 305 38 48 chr11 80991030 80991240 -40852616 + MIRb SINE MIR 52 259 -9 9 1202 1253 242 40 90 chr11 80991521 80991920 -40851936 - MTE2a LTR MaLR 0 379 1 9 1202 713 228 73 37 chr11 80992910 80993053 -40850803 - B3A SINE B2 0 198 48 9 1202 1101 54 0 0 chr11 80993053 80993202 -40850654 + (TCCTG)n Simple_repeat Simple_repeat 1 149 0 9 1202 713 228 73 37 chr11 80993202 80993249 -40850607 - B3A SINE B2 -151 47 1 9 1202 369 0 0 0 chr11 80993469 80993510 -40850346 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 9 1202 319 322 17 23 chr11 80993999 80994154 -40849702 + MIRc SINE MIR 24 173 -103 9 1202 545 267 82 16 chr11 80994841 80995035 -40848821 - L1MA4 LINE L1 -401 5899 5693 9 1202 984 289 10 25 chr11 80995461 80995736 -40848120 + ORR1E LTR MaLR 1 264 -106 9 1202 861 76 0 0 chr11 80995736 80995854 -40848002 + (TC)n Simple_repeat Simple_repeat 1 118 0 9 1202 489 34 0 0 chr11 80995854 80995913 -40847943 + (TCC)n Simple_repeat Simple_repeat 1 59 0 9 1202 513 32 0 0 chr11 80995920 80995983 -40847873 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 1202 305 276 68 11 chr11 80995983 80996063 -40847793 + ORR1E LTR MaLR 274 359 0 9 1202 241 250 0 19 chr11 80996690 80996743 -40847113 - B3A SINE B2 -146 52 1 9 1202 340 36 35 35 chr11 80996755 80996813 -40847043 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 9 1202 1333 77 22 11 chr11 80996817 80997002 -40846854 + B2_Mm2 SINE B2 3 189 -6 9 1202 354 23 0 0 chr11 80997160 80997203 -40846653 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1202 29 0 0 0 chr11 80998130 80998159 -40845697 + AT_rich Low_complexity Low_complexity 1 29 0 9 1202 206 105 26 0 chr11 80999512 80999550 -40844306 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1202 395 181 79 49 chr11 80999763 80999910 -40843946 - B3A SINE B2 -34 161 1 9 1202 980 159 18 0 chr11 81000073 81000243 -40843613 + Lx4A LINE L1 6884 7056 -2 1 1202 390 209 0 0 chr11 81000577 81000644 -40843212 - ID4 SINE ID -16 67 1 2 1202 251 271 12 50 chr11 81000820 81000942 -40842914 - MIR SINE MIR -95 167 54 3 1202 449 279 36 29 chr11 81001092 81001232 -40842624 - MLT1A1 LTR MaLR -12 396 256 4 1202 787 209 17 39 chr11 81001450 81001629 -40842227 + B3A SINE B2 1 175 -23 5 1202 347 347 93 77 chr11 81001690 81002043 -40841813 + ORR1E LTR MaLR 1 359 0 6 1202 222 118 0 0 chr11 81002133 81002167 -40841689 + (ATG)n Simple_repeat Simple_repeat 2 35 0 7 1203 309 26 0 0 chr11 81002657 81002695 -40841161 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1203 258 208 21 0 chr11 81003650 81003698 -40840158 - ID4_ SINE ID -30 53 5 9 1203 430 312 21 7 chr11 81003713 81003855 -40840001 - B1F SINE Alu -2 147 4 1 1203 549 0 0 0 chr11 81003890 81003951 -40839905 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1203 230 125 0 20 chr11 81003953 81004002 -40839854 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1203 222 128 0 0 chr11 81004048 81004087 -40839769 + (GGA)n Simple_repeat Simple_repeat 1 39 0 1 1203 321 296 72 133 chr11 81004160 81004549 -40839307 - L2b LINE L2 -7 3380 2997 1 1203 1163 271 57 62 chr11 81004773 81005127 -40838729 - ORR1E LTR MaLR -2 357 6 1 1203 216 340 25 76 chr11 81005352 81005470 -40838386 - MIRm SINE MIR -79 197 86 1 1203 305 316 52 10 chr11 81005772 81005868 -40837988 + MIRb SINE MIR 78 177 -91 1 1203 492 18 0 0 chr11 81006483 81006540 -40837316 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1203 497 222 183 38 chr11 81006542 81006673 -40837183 - B3A SINE B2 -48 150 1 1 1203 1109 290 76 101 chr11 81006673 81007160 -40836696 - Tigger7 DNA MER2_type -2008 483 9 2 1203 182 243 51 63 chr11 81007274 81007353 -40836503 + L2c LINE L2 3242 3319 -68 2 1203 253 245 19 0 chr11 81007353 81007406 -40836450 + MLT1C LTR MaLR 406 459 -8 2 1203 456 19 0 0 chr11 81008049 81008102 -40835754 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1203 450 0 0 0 chr11 81008102 81008151 -40835705 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1203 240 318 15 0 chr11 81008583 81008649 -40835207 - MIR3 SINE MIR -27 181 115 2 1203 723 54 0 0 chr11 81009112 81009204 -40834652 + (TC)n Simple_repeat Simple_repeat 1 92 0 2 1203 350 374 85 15 chr11 81009854 81010055 -40833801 - MIR SINE MIR -28 234 20 2 1203 944 277 30 34 chr11 81010636 81010905 -40832951 + B4 SINE B4 12 279 -13 2 1203 677 303 57 40 chr11 81011090 81011386 -40832470 - MER33 DNA MER1_type -4 320 20 2 1203 893 227 33 115 chr11 81011576 81011880 -40831976 + B4A SINE B4 1 279 -13 3 1203 389 36 0 18 chr11 81011883 81011939 -40831917 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1203 23 0 0 0 chr11 81012338 81012361 -40831495 + AT_rich Low_complexity Low_complexity 1 23 0 3 1203 266 288 138 23 chr11 81013123 81013272 -40830584 - MIRb SINE MIR -92 176 13 3 1203 197 260 120 0 chr11 81014428 81014478 -40829378 - L2c LINE L2 -49 3338 3283 3 1203 378 0 0 0 chr11 81015061 81015103 -40828753 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1203 1145 220 0 0 chr11 81015232 81015441 -40828415 - ID_B1 SINE B4 -13 211 3 3 1203 743 59 10 0 chr11 81015729 81015830 -40828026 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1203 369 185 6 44 chr11 81015836 81015994 -40827862 + (TCTG)n Simple_repeat Simple_repeat 2 153 0 3 1203 627 260 99 61 chr11 81016691 81016953 -40826903 + B4 SINE B4 2 273 -19 3 1203 204 40 0 0 chr11 81016957 81016982 -40826874 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1203 185 188 188 0 chr11 81017141 81017189 -40826667 + L2 LINE L2 1269 1325 -2094 4 1203 370 255 71 0 chr11 81017876 81017974 -40825882 + B4A SINE B4 170 274 -18 4 1203 270 0 0 0 chr11 81018026 81018056 -40825800 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1203 858 250 79 4 chr11 81018076 81018329 -40825527 + L1MB2 LINE L1 5884 6155 -16 4 1203 503 269 16 66 chr11 81018625 81018787 -40825069 + B1F SINE Alu 10 311 0 4 1203 26 0 0 0 chr11 81019458 81019484 -40824372 + AT_rich Low_complexity Low_complexity 1 26 0 4 1203 227 233 135 57 chr11 81020101 81020242 -40823614 - L1M3e LINE L1 -6377 653 502 4 1203 552 245 145 0 chr11 81020430 81020589 -40823267 + B3A SINE B2 1 182 -16 4 1203 403 389 0 0 chr11 81020985 81021124 -40822732 + MER58A DNA MER1_type 80 218 -6 4 1203 225 0 0 0 chr11 81022232 81022257 -40821599 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1203 1355 139 73 8 chr11 81023924 81024171 -40819685 - RLTR15 LTR ERVK -96 263 1 5 1203 245 330 138 0 chr11 81024670 81024779 -40819077 + MIRb SINE MIR 88 211 -57 5 1203 255 31 0 0 chr11 81025000 81025032 -40818824 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 5 1203 440 264 108 102 chr11 81025075 81025408 -40818448 - MamRep434 DNA TcMar -1 425 91 5 1203 214 366 104 7 chr11 81025410 81025545 -40818311 - L2a LINE L2 -5 3421 3274 5 1203 454 87 71 23 chr11 81025880 81025965 -40817891 - BC1_Mm scRNA scRNA -32 120 36 5 1203 207 286 169 60 chr11 81026096 81026297 -40817559 + L2 LINE L2 782 1004 -2415 5 1203 411 262 30 118 chr11 81026578 81026623 -40817233 + MT2B LTR ERVL 125 154 -447 5 1203 999 142 0 20 chr11 81026623 81026774 -40817082 + B1_Mur3 SINE Alu 2 149 0 5 1203 480 350 129 15 chr11 81026784 81027188 -40816668 - L2a LINE L2 -940 2479 2030 5 1203 571 348 114 40 chr11 81027260 81027824 -40816032 - L2a LINE L2 -1516 1903 1294 5 1203 570 29 0 0 chr11 81027824 81027892 -40815964 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1203 571 348 114 40 chr11 81027892 81027905 -40815951 - L2a LINE L2 -2126 1293 1283 5 1203 208 226 0 0 chr11 81028376 81028429 -40815427 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 6 1203 370 363 88 34 chr11 81028464 81028818 -40815038 - L2a LINE L2 -2795 624 252 5 1203 424 362 14 0 chr11 81029102 81029243 -40814613 - MER5A1 DNA MER1_type -22 144 2 6 1203 1194 77 59 21 chr11 81029445 81029632 -40814224 + B2_Mm2 SINE B2 1 194 -1 6 1203 836 270 81 64 chr11 81029958 81030302 -40813554 - Charlie22a DNA MER1_type -48 443 94 6 1203 743 219 6 0 chr11 81030523 81030701 -40813155 + CT-rich Low_complexity Low_complexity 2 180 0 6 1203 1184 235 63 23 chr11 81030733 81031074 -40812782 + MTD LTR MaLR 33 396 0 6 1203 328 255 20 39 chr11 81031078 81031180 -40812676 - PB1D10 SINE Alu -17 100 1 6 1203 1672 168 84 93 chr11 81031724 81032163 -40811693 - RMER10A LTR ERVL -6 436 2 6 1203 238 337 60 20 chr11 81035015 81035115 -40808741 + L2c LINE L2 3284 3387 0 6 1203 599 295 27 16 chr11 81036006 81036192 -40807664 - MER5A DNA MER1_type 0 189 2 7 1203 683 251 113 2 chr11 81037009 81037301 -40806555 + MER58B DNA MER1_type 3 340 -1 7 1203 466 312 49 101 chr11 81038435 81038702 -40805154 + MLT1J LTR MaLR 119 371 -141 7 1203 310 326 84 9 chr11 81040304 81040441 -40803415 - MIRc SINE MIR -52 156 11 7 1203 332 246 263 45 chr11 81040830 81041009 -40802847 + ORR1D2 LTR MaLR 2 219 -151 7 1203 743 222 101 0 chr11 81041268 81041457 -40802399 + ORR1D2 LTR MaLR 141 348 -22 7 1203 190 346 0 71 chr11 81042484 81042568 -40801288 - MIR SINE MIR -88 120 43 7 1203 309 328 22 77 chr11 81043115 81043309 -40800547 - MIR3 SINE MIR -5 203 21 7 1203 373 154 26 42 chr11 81043801 81043882 -40799974 - MTD LTR MaLR -14 405 293 7 1203 2641 113 10 8 chr11 81043884 81044269 -40799587 - ORR1B1 LTR MaLR -8 386 1 7 1203 1169 279 58 27 chr11 81044269 81044596 -40799260 - MTD LTR MaLR -82 337 1 7 1203 477 269 17 19 chr11 81045133 81045286 -40798570 + MLT1A1 LTR MaLR 210 408 0 8 1203 230 279 22 65 chr11 81046111 81046203 -40797653 + L2c LINE L2 3101 3188 -199 8 1203 387 0 0 0 chr11 81046221 81046264 -40797592 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1203 795 276 21 10 chr11 81046281 81046475 -40797381 - B4A SINE B4 -96 196 1 8 1203 182 309 14 42 chr11 81046530 81046601 -40797255 + L2c LINE L2 3251 3319 -68 8 1203 1091 206 87 164 chr11 81047808 81048256 -40795600 + MTD LTR MaLR 1 405 -14 8 1203 284 257 114 0 chr11 81048353 81048423 -40795433 - PB1D10 SINE Alu -35 82 5 8 1203 362 283 93 33 chr11 81048737 81048773 -40795083 - B3A SINE B2 0 198 167 8 1203 728 77 0 9 chr11 81048773 81048878 -40794978 + (GGGAGA)n Simple_repeat Simple_repeat 3 106 0 8 1203 362 283 93 33 chr11 81048878 81048991 -40794865 - B3A SINE B2 -32 166 40 8 1203 614 192 83 8 chr11 81048989 81049110 -40794746 + MTE2a LTR MaLR 242 371 -8 8 1203 320 340 50 27 chr11 81049610 81049792 -40794064 + MIRc SINE MIR 22 210 -58 8 1203 300 319 93 12 chr11 81049807 81049969 -40793887 - MIRb SINE MIR -19 249 75 9 1203 387 0 0 0 chr11 81050038 81050081 -40793775 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1203 1267 251 152 6 chr11 81050232 81050561 -40793295 + MTEa LTR MaLR 1 377 -2 9 1203 233 171 0 0 chr11 81051210 81051251 -40792605 + tRNA-Ala-GCY_ tRNA tRNA 32 72 -3 9 1203 255 114 0 0 chr11 81051532 81051576 -40792280 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 9 1203 327 65 0 0 chr11 81052095 81052141 -40791715 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1203 258 291 93 38 chr11 81053139 81053259 -40790597 - MIRc SINE MIR -36 232 113 9 1203 974 300 177 44 chr11 81053437 81054255 -40789601 - L2a LINE L2 -5 3421 2470 9 1203 279 0 0 0 chr11 81054255 81054286 -40789570 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1203 974 305 160 25 chr11 81054286 81054467 -40789389 - L2a LINE L2 -950 2469 2275 9 1203 257 365 127 45 chr11 81054513 81054843 -40789013 - L2a LINE L2 -1233 2186 1830 9 1203 2230 92 10 19 chr11 81054843 81055155 -40788701 + RLTR27 LTR ERVK 1 309 0 9 1203 932 278 54 32 chr11 81055736 81055939 -40787917 - B4 SINE B4 0 292 91 1 1203 477 0 0 0 chr11 81055939 81055992 -40787864 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1203 402 79 0 0 chr11 81055992 81056054 -40787802 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1203 932 278 54 32 chr11 81056054 81056128 -40787728 - B4 SINE B4 -202 90 9 1 1203 602 268 25 25 chr11 81056167 81056328 -40787528 - RSINE1 SINE B4 -2 163 3 1 1203 1913 178 115 21 chr11 81056365 81056749 -40787107 - MTC LTR MaLR 0 421 2 1 1203 319 282 16 70 chr11 81057027 81057230 -40786626 + L1MEf LINE L1 432 617 -5477 1 1203 378 0 0 0 chr11 81057318 81057360 -40786496 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1203 246 288 14 43 chr11 81057361 81057430 -40786426 - ID4 SINE ID -9 74 8 1 1203 595 297 57 68 chr11 81057590 81058049 -40785807 + L1MEf LINE L1 842 1295 -4905 1 1203 536 227 56 7 chr11 81060091 81060233 -40783623 - B1F1 SINE Alu 0 149 1 1 1203 263 333 66 8 chr11 81060502 81060623 -40783233 + MIRc SINE MIR 34 161 -107 1 1203 1324 243 67 35 chr11 81062647 81063050 -40780806 + MTD LTR MaLR 5 399 -20 1 1203 992 228 11 0 chr11 81063901 81064090 -40779766 + B3 SINE B2 1 191 -25 1 1203 293 223 50 69 chr11 81064076 81064177 -40779679 + MLT1A1 LTR MaLR 232 330 -78 1 1203 1161 129 118 15 chr11 81064330 81064534 -40779322 + URR1A DNA MER1_type 2 226 0 1 1203 267 185 56 0 chr11 81064552 81064606 -40779250 - MIRc SINE MIR -110 158 102 1 1203 297 328 58 63 chr11 81064816 81065005 -40778851 + L2c LINE L2 3049 3236 -151 1 1203 429 339 17 12 chr11 81065429 81065602 -40778254 + L3 LINE CR1 3524 3697 -792 1 1203 5064 200 59 31 chr11 81065947 81066062 -40777794 + Lx9 LINE L1 6510 6612 -1032 1 1203 1001 72 7 0 chr11 81066062 81066201 -40777655 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 1 1203 1372 68 17 6 chr11 81066207 81066385 -40777471 - B2_Mm2 SINE B2 -14 181 2 1 1203 5064 200 59 31 chr11 81066385 81067221 -40776635 + Lx9 LINE L1 6613 7471 -173 1 1203 375 41 0 0 chr11 81067221 81067270 -40776586 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1203 5064 200 59 31 chr11 81067270 81067413 -40776443 + Lx9 LINE L1 7472 7642 -2 1 1203 713 272 18 44 chr11 81067444 81067671 -40776185 + ID_B1 SINE B4 1 221 -3 1 1203 373 323 60 20 chr11 81067705 81067904 -40775952 + L3 LINE CR1 4144 4350 -139 1 1203 356 320 54 54 chr11 81068446 81068631 -40775225 + MIRb SINE MIR 13 197 -71 1 1203 348 85 0 63 chr11 81069994 81070057 -40773799 - HAL1-3A_ME LINE L1 -825 2033 1975 1 1203 303 155 24 12 chr11 81070057 81070142 -40773714 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1203 505 180 35 12 chr11 81070193 81070362 -40773494 + (TG)n Simple_repeat Simple_repeat 1 173 0 1 1203 388 159 43 14 chr11 81070392 81070532 -40773324 + (TG)n Simple_repeat Simple_repeat 2 145 0 1 1203 871 253 22 26 chr11 81070615 81070846 -40773010 + MTEa LTR MaLR 1 230 -149 1 1203 261 221 59 0 chr11 81071245 81071313 -40772543 + L1MA9 LINE L1 6081 6152 -160 1 1203 408 329 50 0 chr11 81071563 81071703 -40772153 - B1F1 SINE Alu -2 147 1 1 1203 225 222 0 18 chr11 81072061 81072116 -40771740 - MLT1I LTR MaLR -4 407 354 1 1203 1043 261 61 9 chr11 81072962 81073290 -40770566 + L1MA7 LINE L1 5569 5913 -378 1 1203 998 194 129 11 chr11 81073336 81073607 -40770249 + RLTR11A LTR ERVK 1 303 -225 1 1203 2467 142 78 27 chr11 81073576 81073650 -40770206 + RLTR25B LTR ERVK 258 326 -702 1 1203 759 22 0 0 chr11 81073650 81073739 -40770117 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1203 2467 161 84 34 chr11 81073739 81074270 -40769586 + RLTR25B LTR ERVK 327 1028 0 1 1203 365 273 39 29 chr11 81074621 81074793 -40769063 + MIR SINE MIR 85 260 -8 1 1203 351 0 0 0 chr11 81075222 81075261 -40768595 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1203 261 294 15 0 chr11 81075360 81075428 -40768428 - MER96 DNA hAT -106 69 1 1 1203 634 118 8 16 chr11 81075569 81075690 -40768166 + (TCCA)n Simple_repeat Simple_repeat 3 122 0 1 1203 289 277 51 51 chr11 81076393 81076511 -40767345 - MIRb SINE MIR -61 207 90 1 1203 256 267 16 57 chr11 81077848 81077971 -40765885 + Lx8 LINE L1 7353 7470 -3 1 1203 269 292 115 13 chr11 81078234 81078390 -40765466 + L2b LINE L2 3216 3387 0 1 1203 432 0 0 0 chr11 81078959 81079007 -40764849 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1203 1740 263 78 29 chr11 81079801 81080036 -40763820 - Lx9 LINE L1 -26 7618 7352 1 1203 270 0 0 0 chr11 81080036 81080066 -40763790 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 1 1203 1740 263 78 29 chr11 81080066 81080442 -40763414 - Lx9 LINE L1 -293 7351 6978 1 1203 428 344 46 67 chr11 81080732 81080924 -40762932 - MLT1I LTR MaLR 0 411 218 1 1203 1122 209 179 9 chr11 81080924 81081242 -40762614 + ORR1D1 LTR MaLR 1 372 -2 1 1203 428 344 46 67 chr11 81081242 81081289 -40762567 - MLT1I LTR MaLR -194 217 177 1 1203 192 77 0 0 chr11 81082309 81082335 -40761521 + (CGTG)n Simple_repeat Simple_repeat 2 27 0 1 1203 660 282 59 101 chr11 81082377 81082665 -40761191 - B4 SINE B4 -14 278 3 1 1203 184 274 0 0 chr11 81083451 81083502 -40760354 - MIR SINE MIR -67 141 91 1 1203 391 293 6 52 chr11 81083813 81083986 -40759870 + L1MB8 LINE L1 6008 6172 -6 1 1203 488 228 0 6 chr11 81084602 81084774 -40759082 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1203 681 239 0 49 chr11 81084777 81084793 -40759063 - RSINE1 SINE B4 0 165 150 1 1203 351 44 0 0 chr11 81084793 81084838 -40759018 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1203 354 45 0 0 chr11 81084838 81084881 -40758975 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1203 681 239 0 49 chr11 81084881 81085026 -40758830 - RSINE1 SINE B4 -16 149 12 1 1203 231 311 0 37 chr11 81085126 81085233 -40758623 + CT-rich Low_complexity Low_complexity 2 104 0 1 1203 433 189 0 0 chr11 81085271 81085345 -40758511 + B4 SINE B4 2 75 -217 1 1203 462 88 0 0 chr11 81085473 81085541 -40758315 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1203 259 294 67 19 chr11 81087286 81087390 -40756466 + MIRb SINE MIR 66 174 -94 1 1203 304 289 20 30 chr11 81087470 81087570 -40756286 - MIR SINE MIR -130 132 34 1 1203 283 245 19 58 chr11 81088759 81088863 -40754993 - MLT1A1 LTR MaLR -3 405 306 1 1203 262 67 0 43 chr11 81089095 81089142 -40754714 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 1203 2625 72 114 11 chr11 81089653 81090021 -40753835 - MTB_Mm LTR MaLR 0 407 2 1 1203 207 0 0 0 chr11 81090578 81090601 -40753255 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1203 1369 96 16 11 chr11 81090641 81090831 -40753025 + B2_Mm2 SINE B2 2 192 -3 1 1203 211 278 19 0 chr11 81090831 81090885 -40752971 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 1 1203 695 53 0 0 chr11 81091442 81091537 -40752319 + L1_Mus2 LINE L1 6472 6566 0 1 1203 341 237 67 73 chr11 81091908 81092058 -40751798 - MTE2b LTR MaLR -61 318 170 1 1203 488 93 13 0 chr11 81092058 81092133 -40751723 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 1 1203 1216 34 0 13 chr11 81092133 81092282 -40751574 - B1_Mus1 SINE Alu 0 148 2 1 1203 667 279 52 0 chr11 81092282 81092454 -40751402 - MTE2b LTR MaLR -198 181 1 1 1203 205 233 41 0 chr11 81095207 81095280 -40748576 + CT-rich Low_complexity Low_complexity 2 77 0 1 1203 282 160 0 0 chr11 81095708 81095758 -40748098 + (CAGAGA)n Simple_repeat Simple_repeat 2 51 0 1 1203 255 294 11 0 chr11 81095759 81095851 -40748005 + GA-rich Low_complexity Low_complexity 1 93 0 1 1203 363 78 0 0 chr11 81098002 81098053 -40745803 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1203 1635 194 74 27 chr11 81098380 81098746 -40745110 + ORR1C2 LTR MaLR 2 384 0 1 1203 248 331 86 39 chr11 81099185 81099501 -40744355 + L1M5 LINE L1 5566 5901 -1981 1 1203 226 281 94 24 chr11 81101462 81101577 -40742279 + L2b LINE L2 3032 3152 -235 1 1203 300 120 0 0 chr11 81104935 81104985 -40738871 + (CAT)n Simple_repeat Simple_repeat 2 51 0 1 1203 995 235 0 0 chr11 81104985 81105181 -40738675 - B3 SINE B2 -12 204 9 1 1203 483 258 16 0 chr11 81105197 81105321 -40738535 - ID_B1 SINE B4 -8 216 91 1 1203 217 314 34 62 chr11 81105453 81105599 -40738257 - L2a LINE L2 -3 3423 3282 1 1203 547 245 69 7 chr11 81106353 81106497 -40737359 + RSINE1 SINE B4 11 163 -2 1 1203 294 87 0 0 chr11 81106516 81106562 -40737294 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 1 1203 532 329 51 16 chr11 81106679 81106932 -40736924 + MLT1F LTR MaLR 1 262 -286 1 1203 196 345 75 43 chr11 81108013 81108107 -40735749 - L2c LINE L2 -38 3349 3253 1 1203 385 243 9 19 chr11 81109734 81109839 -40734017 - MTEb LTR MaLR 0 379 276 1 1203 345 237 50 20 chr11 81109873 81109972 -40733884 - PB1D7 SINE Alu -5 115 14 1 1203 1737 105 8 0 chr11 81110229 81110487 -40733369 + ORR1A2 LTR MaLR 60 319 -8 1 1203 641 234 57 42 chr11 81111177 81111369 -40732487 - B3A SINE B2 -1 197 3 1 1203 573 269 0 0 chr11 81111897 81112068 -40731788 + (CA)n Simple_repeat Simple_repeat 2 172 0 1 1203 381 305 45 120 chr11 81113318 81113694 -40730162 + MTEa LTR MaLR 1 348 -31 1 1203 294 29 0 0 chr11 81113700 81113735 -40730121 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1203 338 0 0 23 chr11 81113939 81113982 -40729874 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 1 1203 513 172 0 0 chr11 81114352 81114474 -40729382 + CT-rich Low_complexity Low_complexity 2 123 0 1 1203 375 23 0 0 chr11 81114645 81114689 -40729167 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1 1203 298 294 29 0 chr11 81114698 81114800 -40729056 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 1 1203 1465 306 65 65 chr11 81115394 81115725 -40728131 - L1ME1 LINE L1 -19 6160 5809 1 1203 279 0 0 0 chr11 81115725 81115756 -40728100 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1203 249 33 0 0 chr11 81115756 81115785 -40728071 + (CG)n Simple_repeat Simple_repeat 2 31 0 1 1203 1465 306 65 65 chr11 81115785 81115805 -40728051 - L1M5 LINE L1 -371 5808 5808 1 1203 646 312 27 57 chr11 81115805 81116104 -40727752 - B4A SINE B4 0 292 3 1 1203 1465 306 65 65 chr11 81116104 81116623 -40727233 - L1ME1 LINE L1 -371 5808 5289 1 1203 268 319 11 0 chr11 81116731 81116815 -40727041 + CT-rich Low_complexity Low_complexity 11 95 0 1 1203 363 269 27 18 chr11 81116815 81116925 -40726931 - PB1D10 SINE Alu -5 112 2 2 1203 281 294 24 0 chr11 81117611 81117696 -40726160 + MER34 LTR ERV1 380 466 -76 2 1203 411 73 0 0 chr11 81118084 81118139 -40725717 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 2 1203 594 250 74 30 chr11 81118338 81118540 -40725316 - B3 SINE B2 -4 212 2 2 1203 321 310 167 24 chr11 81118719 81119068 -40724788 - L1ME1 LINE L1 -2323 3823 3424 1 1203 2931 141 33 18 chr11 81119252 81119793 -40724063 + RMER1A Other Other 485 1066 0 2 1203 613 309 24 19 chr11 81119892 81120103 -40723753 + B4A SINE B4 1 212 -80 2 1203 332 169 0 27 chr11 81120382 81120455 -40723401 - HAL1-3A_ME LINE L1 -812 2046 1976 2 1203 494 160 13 32 chr11 81120477 81120632 -40723224 + (TG)n Simple_repeat Simple_repeat 2 153 0 2 1203 730 266 55 0 chr11 81120686 81120885 -40722971 - B4 SINE B4 -82 210 1 2 1203 1169 255 87 20 chr11 81121849 81121899 -40721957 - MTD LTR MaLR 0 419 369 2 1203 793 239 44 200 chr11 81121899 81122354 -40721502 - ORR1C2 LTR MaLR 0 384 1 2 1203 1169 255 87 20 chr11 81122354 81122696 -40721160 - MTD LTR MaLR -51 368 1 2 1203 558 238 10 14 chr11 81122905 81123195 -40720661 + (TATG)n Simple_repeat Simple_repeat 1 288 0 2 1203 233 169 17 0 chr11 81123207 81123266 -40720590 + (TATG)n Simple_repeat Simple_repeat 3 62 0 2 1203 317 283 53 38 chr11 81123662 81123681 -40720175 + ID_B1 SINE B4 79 212 -12 2 1203 466 205 53 9 chr11 81123681 81123794 -40720062 + B1F SINE Alu 20 137 -12 2 1203 451 293 47 0 chr11 81124064 81124214 -40719642 + RSINE1 SINE B4 3 159 -6 2 1203 198 103 0 0 chr11 81124270 81124299 -40719557 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2 1203 402 312 122 63 chr11 81124307 81124771 -40719085 - L1ME1 LINE L1 -15 6164 5674 2 1203 1224 237 22 49 chr11 81125349 81125768 -40718088 - MTE2a LTR MaLR -14 405 2 2 1203 469 301 96 71 chr11 81125815 81126097 -40717759 - MLT1A1 LTR MaLR -76 332 44 2 1203 226 289 72 72 chr11 81126490 81126587 -40717269 - MIR3 SINE MIR -10 198 102 2 1203 282 245 88 35 chr11 81127681 81127795 -40716061 + MIRb SINE MIR 135 254 -14 2 1203 687 249 77 0 chr11 81127861 81128030 -40715826 - B3A SINE B2 -16 182 1 2 1203 679 226 25 19 chr11 81128838 81128996 -40714860 - B3 SINE B2 -57 159 1 2 1203 226 118 0 0 chr11 81129511 81129545 -40714311 + B4 SINE B4 185 218 -74 2 1203 746 266 76 23 chr11 81130888 81131150 -40712706 + B4A SINE B4 3 278 -14 2 1203 1935 160 83 24 chr11 81131330 81131702 -40712154 - ORR1B1 LTR MaLR 0 394 1 2 1203 733 270 22 0 chr11 81132074 81132259 -40711597 - MTEb LTR MaLR 0 379 191 2 1203 737 299 33 37 chr11 81132320 81132535 -40711321 - MTEb LTR MaLR -165 214 1 2 1203 202 277 76 80 chr11 81132823 81133006 -40710850 - MIRc SINE MIR -75 187 14 2 1204 263 283 140 32 chr11 81134037 81134223 -40709633 - L2c LINE L2 -50 3337 3132 2 1204 244 300 0 22 chr11 81134250 81134342 -40709514 + MLT1J LTR MaLR 2 91 -421 2 1204 666 280 134 16 chr11 81134548 81134871 -40708985 + MTD LTR MaLR 20 403 -16 2 1204 427 278 61 39 chr11 81135058 81135238 -40708618 - RMER15 LTR ERVL -15 560 377 2 1204 295 195 24 31 chr11 81137254 81137477 -40706379 + CT-rich Low_complexity Low_complexity 1 221 0 2 1204 360 0 0 0 chr11 81137705 81137745 -40706111 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1204 1224 34 7 0 chr11 81138535 81138681 -40705175 + B1_Mus1 SINE Alu 1 147 -1 2 1204 195 100 0 0 chr11 81138683 81138713 -40705143 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 1204 635 296 12 18 chr11 81139648 81139813 -40704043 - B4 SINE B4 -4 288 125 2 1204 340 147 27 0 chr11 81139824 81139899 -40703957 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 1204 423 198 81 98 chr11 81140051 81140174 -40703682 - B4 SINE B4 -170 122 2 2 1204 301 268 40 40 chr11 81140200 81140301 -40703555 - PB1D10 SINE Alu 0 117 17 2 1204 268 216 32 54 chr11 81141806 81141899 -40701957 - MER5A1 DNA MER1_type -46 120 30 2 1204 1109 254 20 47 chr11 81142027 81142325 -40701531 + B4 SINE B4 1 290 -2 2 1204 333 0 0 0 chr11 81142335 81142372 -40701484 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1204 180 0 0 0 chr11 81142372 81142392 -40701464 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1204 189 0 0 0 chr11 81142392 81142413 -40701443 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1204 459 0 0 0 chr11 81142412 81142463 -40701393 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1204 1204 224 67 3 chr11 81143393 81143546 -40700310 + MTD LTR MaLR 66 225 -194 2 1204 279 0 0 0 chr11 81143546 81143577 -40700279 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1204 1204 224 67 3 chr11 81143577 81143723 -40700133 + MTD LTR MaLR 226 383 -36 2 1204 2042 225 5 7 chr11 81143767 81144179 -40699677 + Lx6 LINE L1 7040 7450 -10 2 1204 209 222 50 100 chr11 81144201 81144301 -40699555 + MIRb SINE MIR 58 152 -116 2 1204 202 182 0 43 chr11 81146547 81146593 -40697263 + G-rich Low_complexity Low_complexity 1 44 0 2 1204 660 264 96 40 chr11 81146605 81146854 -40697002 - B4A SINE B4 -28 264 2 2 1204 255 61 0 0 chr11 81147285 81147318 -40696538 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2 1204 1505 156 140 14 chr11 81147318 81147604 -40696252 - Lx4B LINE L1 -19 7039 6718 2 1204 260 298 22 61 chr11 81147604 81147702 -40696154 - PB1 SINE Alu -30 119 27 2 1204 212 256 45 23 chr11 81148934 81149022 -40694834 + MIR3 SINE MIR 104 193 -15 2 1204 312 27 0 0 chr11 81149107 81149144 -40694712 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2 1204 638 176 183 101 chr11 81149809 81150017 -40693839 - URR1A DNA MER1_type 0 226 2 2 1204 536 331 0 33 chr11 81150042 81150195 -40693661 - B3A SINE B2 -50 148 1 2 1204 301 219 235 0 chr11 81150951 81151070 -40692786 - Lx6 LINE L1 0 7460 7314 2 1204 194 330 30 20 chr11 81152088 81152187 -40691669 - L2a LINE L2 -227 3199 3100 2 1204 223 224 26 0 chr11 81152436 81152512 -40691344 + CT-rich Low_complexity Low_complexity 4 81 0 2 1204 936 199 348 0 chr11 81152768 81152935 -40690921 - ORR1D1 LTR MaLR 0 374 168 2 1204 588 29 0 0 chr11 81152935 81153005 -40690851 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1204 936 199 348 0 chr11 81153005 81153113 -40690743 - ORR1D1 LTR MaLR -207 167 4 2 1204 1080 24 0 0 chr11 81153616 81153743 -40690113 + (TC)n Simple_repeat Simple_repeat 2 128 0 2 1204 217 372 0 0 chr11 81153868 81153946 -40689910 + L2a LINE L2 3343 3420 -6 2 1204 276 296 124 27 chr11 81154374 81154565 -40689291 - MIRb SINE MIR -60 208 12 2 1204 279 0 0 0 chr11 81155715 81155746 -40688110 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1204 736 283 5 0 chr11 81155882 81156069 -40687787 + MLT1D LTR MaLR 318 505 0 2 1204 355 300 85 28 chr11 81156241 81156488 -40687368 - Charlie5 DNA MER1_type 0 2624 2364 2 1204 957 296 50 65 chr11 81156637 81157020 -40686836 + MTEa LTR MaLR 3 379 0 2 1204 1011 92 0 27 chr11 81157436 81157582 -40686274 - B1_Mus1 SINE Alu -5 143 2 2 1204 2878 61 54 33 chr11 81157821 81158212 -40685644 + MTB LTR MaLR 1 399 -1 2 1204 425 256 43 21 chr11 81158560 81158700 -40685156 - MIR SINE MIR -100 162 20 2 1204 805 207 122 0 chr11 81158928 81159116 -40684740 - URR1A DNA MER1_type -15 211 1 2 1204 325 282 16 43 chr11 81161668 81161853 -40682003 + CT-rich Low_complexity Low_complexity 1 180 0 2 1204 311 236 0 27 chr11 81162735 81162809 -40681047 + PB1D9 SINE Alu 44 115 -5 2 1204 230 259 185 0 chr11 81162811 81162919 -40680937 + L1MC LINE L1 3921 4048 -2098 2 1204 5414 58 0 0 chr11 81163023 81163692 -40680164 - L1Md_F2 LINE L1 0 6582 5914 2 1204 1066 46 1 1 chr11 81163692 81163833 -40680023 + L1Md_F2 LINE L1 5812 5952 -1106 2 1204 241 398 10 0 chr11 81163905 81164008 -40679848 + MLT2B3 LTR ERVL 1 104 -450 2 1204 234 0 0 0 chr11 81164551 81164577 -40679279 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1204 225 0 0 0 chr11 81164748 81164773 -40679083 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 1204 279 0 0 0 chr11 81164775 81164806 -40679050 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1204 318 294 77 3 chr11 81164859 81165001 -40678855 - MIR SINE MIR -1 267 111 2 1204 387 0 0 0 chr11 81165308 81165351 -40678505 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1204 397 299 105 63 chr11 81166152 81166391 -40677465 - B4A SINE B4 -20 272 24 2 1204 372 227 52 43 chr11 81166554 81166669 -40677187 - PB1D10 SINE Alu 0 117 2 2 1204 483 18 0 0 chr11 81167479 81167535 -40676321 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1204 351 315 96 20 chr11 81168189 81168335 -40675521 + MER96 DNA hAT 15 171 -4 2 1204 288 77 0 0 chr11 81169049 81169088 -40674768 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 2 1204 253 338 12 0 chr11 81170311 81170391 -40673465 - MIRc SINE MIR -107 161 81 2 1204 366 170 0 0 chr11 81170722 81170816 -40673040 + GA-rich Low_complexity Low_complexity 1 94 0 2 1204 297 0 0 0 chr11 81171091 81171124 -40672732 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1204 751 231 38 13 chr11 81171765 81171923 -40671933 + B3A SINE B2 5 166 -32 2 1204 531 0 0 0 chr11 81171923 81171982 -40671874 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1204 469 269 41 103 chr11 81171982 81172018 -40671838 + B2_Mm2 SINE B2 153 186 -9 2 1204 383 308 29 9 chr11 81172894 81172999 -40670857 - MIRm SINE MIR -116 160 54 2 1204 4699 40 2 2 chr11 81173256 81173815 -40670041 + L1_Mus1 LINE L1 6007 6565 -2 2 1204 351 287 29 14 chr11 81175279 81175417 -40668439 + CT-rich Low_complexity Low_complexity 1 140 0 2 1204 240 333 109 17 chr11 81175504 81175623 -40668233 + MIRm SINE MIR 52 181 -95 2 1204 634 307 87 62 chr11 81176032 81176390 -40667466 - L3 LINE CR1 -508 3981 3615 2 1204 438 124 0 0 chr11 81177482 81177571 -40666285 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 1204 358 301 191 19 chr11 81177717 81177927 -40665929 + MIRb SINE MIR 22 267 -1 3 1204 761 262 30 79 chr11 81178009 81178212 -40665644 + B3A SINE B2 6 198 0 3 1204 189 261 15 0 chr11 81178745 81178810 -40665046 - L3 LINE CR1 -1717 2772 2707 2 1204 410 299 13 26 chr11 81178943 81179094 -40664762 + CT-rich Low_complexity Low_complexity 4 152 0 3 1204 265 284 70 63 chr11 81179924 81180082 -40663774 - MIRc SINE MIR -103 165 7 3 1204 486 0 0 0 chr11 81180887 81180941 -40662915 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1204 530 271 46 85 chr11 81180947 81181100 -40662756 - B3A SINE B2 -51 147 1 3 1204 252 308 61 66 chr11 81182054 81182252 -40661604 - L1M5 LINE L1 -2979 3167 2971 3 1204 623 327 56 66 chr11 81182477 81182765 -40661091 + B4 SINE B4 1 285 -7 3 1204 180 355 190 5 chr11 81183112 81183296 -40660560 - MIRb SINE MIR -34 234 17 3 1204 183 216 0 0 chr11 81184466 81184503 -40659353 + MIRc SINE MIR 124 160 -108 3 1204 264 100 0 0 chr11 81184880 81184920 -40658936 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1204 417 351 25 19 chr11 81184948 81185105 -40658751 - MER5B DNA MER1_type -2 176 19 3 1204 651 273 51 32 chr11 81185519 81185735 -40658121 - MLT1F1 LTR MaLR 0 569 350 3 1204 190 302 31 31 chr11 81186419 81186484 -40657372 + MIR3 SINE MIR 93 157 -51 3 1204 571 194 0 0 chr11 81186640 81186733 -40657123 - PB1D10 SINE Alu -12 105 13 3 1204 237 302 71 30 chr11 81186650 81186749 -40657107 - B4A SINE B4 -105 187 85 3 1204 234 0 0 0 chr11 81186758 81186784 -40657072 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1204 363 313 105 65 chr11 81186878 81187155 -40656701 - B4 SINE B4 -3 289 2 3 1204 433 309 102 25 chr11 81187162 81187358 -40656498 - MIR SINE MIR -44 218 8 3 1204 387 0 0 0 chr11 81189735 81189778 -40654078 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1204 235 208 42 0 chr11 81189895 81189943 -40653913 + RMER15 LTR ERVL 430 479 -96 3 1204 2216 120 0 24 chr11 81190684 81191018 -40652838 + ORR1A3 LTR MaLR 1 326 0 3 1204 611 234 26 40 chr11 81191140 81191291 -40652565 - B1_Mur3 SINE Alu 0 149 1 3 1204 220 414 27 7 chr11 81191614 81191760 -40652096 - MIRb SINE MIR -77 191 43 3 1204 323 353 97 23 chr11 81192544 81192843 -40651013 + MLT2F LTR ERVL 253 573 -90 3 1204 187 282 57 106 chr11 81192938 81193061 -40650795 + L2b LINE L2 3090 3206 -169 3 1204 375 246 41 137 chr11 81195916 81196062 -40647794 + MER5B DNA MER1_type 8 139 -39 3 1204 289 279 129 22 chr11 81196139 81196278 -40647578 + MER5A1 DNA MER1_type 6 159 -7 3 1204 442 308 48 42 chr11 81196372 81196538 -40647318 + MER2 DNA MER2_type 35 201 -144 3 1204 277 284 21 54 chr11 81196534 81196627 -40647229 - B4 SINE B4 -201 91 2 3 1204 236 215 91 15 chr11 81196686 81196752 -40647104 - PB1D10 SINE Alu -22 95 25 3 1204 215 304 13 92 chr11 81197969 81198045 -40645811 - ID4_ SINE ID -4 79 10 3 1204 234 0 0 0 chr11 81198973 81198999 -40644857 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1204 687 57 0 0 chr11 81198999 81199086 -40644770 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1204 431 321 0 9 chr11 81199444 81199551 -40644305 - PB1D10 SINE Alu -2 115 10 3 1204 271 390 0 0 chr11 81199605 81199687 -40644169 - ID4 SINE ID -1 82 1 3 1204 1074 79 0 0 chr11 81200063 81200203 -40643653 - B1_Mm SINE Alu 0 147 8 3 1204 1737 160 120 17 chr11 81200575 81200932 -40642924 + ORR1B1 LTR MaLR 1 394 0 3 1204 229 343 56 0 chr11 81201250 81201358 -40642498 - MIR SINE MIR -62 146 33 3 1204 273 317 70 39 chr11 81202099 81202227 -40641629 - MIRb SINE MIR -108 160 29 3 1204 231 214 0 0 chr11 81202455 81202525 -40641331 + CT-rich Low_complexity Low_complexity 4 73 0 3 1204 338 320 112 65 chr11 81202731 81202945 -40640911 + MLT1J1 LTR MaLR 95 318 -126 3 1204 741 252 222 33 chr11 81202945 81203220 -40640636 + MTEa LTR MaLR 1 327 -52 3 1204 735 131 0 0 chr11 81203230 81203367 -40640489 + (TC)n Simple_repeat Simple_repeat 1 137 0 3 1204 248 318 16 0 chr11 81203473 81203536 -40640320 + MLT1J1 LTR MaLR 378 441 -3 3 1204 223 377 78 23 chr11 81204233 81204613 -40639243 + L2a LINE L2 2750 3152 -274 3 1204 391 317 62 10 chr11 81204786 81204983 -40638873 + MIRb SINE MIR 47 254 -14 3 1204 224 317 92 54 chr11 81205317 81205447 -40638409 - MIR3 SINE MIR -67 141 7 3 1204 1197 250 69 4 chr11 81205737 81205998 -40637858 - B4A SINE B4 -4 288 11 3 1204 685 145 0 22 chr11 81206016 81206150 -40637706 + CT-rich Low_complexity Low_complexity 4 134 0 3 1204 337 296 21 56 chr11 81206764 81206925 -40636931 + ID_B1 SINE B4 70 223 -69 3 1204 332 322 79 27 chr11 81207356 81207622 -40636234 - MLT1C LTR MaLR -110 280 1 3 1204 207 286 32 0 chr11 81208422 81208485 -40635371 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 3 1204 846 268 39 39 chr11 81208516 81208745 -40635111 - B4A SINE B4 -16 276 48 3 1204 358 370 73 20 chr11 81209201 81209405 -40634451 - MIRb SINE MIR -7 261 47 3 1204 396 71 0 0 chr11 81209452 81209508 -40634348 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1204 706 304 105 0 chr11 81209524 81209781 -40634075 - B4A SINE B4 -8 284 1 3 1204 607 328 65 55 chr11 81209782 81209972 -40633884 - L1ME1 LINE L1 -44 6135 5938 3 1204 1165 117 147 5 chr11 81209972 81210170 -40633686 - URR1A DNA MER1_type 0 226 1 3 1204 607 328 65 55 chr11 81210170 81210580 -40633276 - L1ME1 LINE L1 -242 5937 5529 3 1204 397 233 67 19 chr11 81210689 81210794 -40633062 - Kanga1 DNA Tc2 -12 1733 1624 3 1204 255 157 0 0 chr11 81211016 81211067 -40632789 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1204 243 140 0 174 chr11 81211067 81211136 -40632720 - RSINE1 SINE B4 0 165 109 3 1204 236 269 0 0 chr11 81211146 81211198 -40632658 - B4A SINE B4 -232 60 9 3 1204 571 310 21 30 chr11 81211277 81211510 -40632346 - Kanga1 DNA Tc2 -994 751 521 3 1204 284 296 169 17 chr11 81211533 81211705 -40632151 - Kanga1 DNA Tc2 -1547 198 4 3 1204 378 0 0 0 chr11 81212491 81212533 -40631323 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1204 459 0 0 0 chr11 81212562 81212613 -40631243 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 3 1204 664 341 63 26 chr11 81212942 81213325 -40630531 - Lx8 LINE L1 -57 7416 7005 3 1204 472 284 24 36 chr11 81213322 81213490 -40630366 - Lx7 LINE L1 -586 7110 6945 3 1204 424 319 24 41 chr11 81213821 81213991 -40629865 - MER5A DNA MER1_type -16 173 7 3 1204 368 356 138 54 chr11 81215545 81215972 -40627884 + L2b LINE L2 2913 3375 0 3 1204 681 335 5 0 chr11 81219638 81219822 -40624034 + B4 SINE B4 4 188 -104 3 1204 2432 94 15 7 chr11 81219822 81220175 -40623681 - ORR1A2 LTR MaLR 0 374 1 3 1204 376 276 19 75 chr11 81220152 81220177 -40623679 + B4 SINE B4 193 217 -75 3 1204 222 37 0 0 chr11 81220177 81220204 -40623652 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1204 376 276 19 75 chr11 81220204 81220284 -40623572 + B4 SINE B4 218 291 -1 3 1204 182 333 0 0 chr11 81220968 81221028 -40622828 + MIRc SINE MIR 175 234 -34 3 1204 294 315 142 44 chr11 81222239 81222352 -40621504 + PB1 SINE Alu 2 125 -2 3 1204 2093 170 24 0 chr11 81223355 81223726 -40620130 + Lx LINE L1 6274 6653 -1 3 1204 421 72 43 0 chr11 81223726 81223795 -40620061 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 3 1204 426 146 0 0 chr11 81223859 81223955 -40619901 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1204 603 0 0 0 chr11 81224021 81224088 -40619768 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 1204 906 73 113 0 chr11 81224090 81224214 -40619642 - B1_Mus1 SINE Alu -6 142 5 3 1204 181 375 0 0 chr11 81224969 81225033 -40618823 + L3 LINE CR1 2161 2224 -2265 3 1204 803 306 11 52 chr11 81225189 81225458 -40618398 + B4A SINE B4 7 264 -28 3 1204 234 0 0 0 chr11 81225602 81225628 -40618228 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1204 379 417 12 0 chr11 81226957 81227199 -40616657 + Lx7 LINE L1 6797 7041 -655 3 1204 601 330 5 28 chr11 81227411 81227623 -40616233 - ID_B1 SINE B4 -16 208 2 3 1204 1353 220 108 3 chr11 81228740 81229073 -40614783 - ORR1D2 LTR MaLR -2 368 1 3 1204 1611 219 87 9 chr11 81229165 81229511 -40614345 - MTD LTR MaLR -14 405 33 3 1204 837 310 99 24 chr11 81231181 81231515 -40612341 + ORR1E LTR MaLR 1 359 0 3 1204 189 291 144 58 chr11 81232390 81232598 -40611258 - L2 LINE L2 -337 3082 2857 3 1204 201 121 0 0 chr11 81232744 81232777 -40611079 + (GGA)n Simple_repeat Simple_repeat 3 35 0 3 1204 275 298 47 19 chr11 81233336 81233442 -40610414 - MIRc SINE MIR -2 266 158 3 1204 260 247 52 31 chr11 81234131 81234227 -40609629 - L2a LINE L2 -1 3425 3328 3 1204 204 97 0 0 chr11 81234575 81234606 -40609250 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 3 1204 552 68 0 0 chr11 81234691 81234764 -40609092 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 3 1204 863 266 50 25 chr11 81234824 81235106 -40608750 - B4A SINE B4 -1 291 3 3 1204 553 314 122 40 chr11 81235950 81236346 -40607510 - MLT1H LTR MaLR -66 483 6 3 1204 223 316 184 0 chr11 81236598 81236734 -40607122 + L2a LINE L2 3265 3425 -1 3 1204 492 18 0 0 chr11 81238708 81238765 -40605091 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1204 409 319 21 5 chr11 81238899 81239091 -40604765 - L1M5 LINE L1 -648 5476 5282 3 1204 391 304 124 50 chr11 81239092 81239293 -40604563 - MER20 DNA MER1_type 0 219 4 3 1204 180 323 154 0 chr11 81239504 81239569 -40604287 + MIRc SINE MIR 19 93 -175 3 1204 711 142 277 0 chr11 81241026 81241181 -40602675 - URR1B DNA MER1_type -27 198 1 3 1204 193 209 23 0 chr11 81241747 81241790 -40602066 + MIRm SINE MIR 225 268 -8 4 1204 252 250 272 69 chr11 81242851 81243083 -40600773 + MLT1E2 LTR MaLR 52 330 -297 4 1204 452 256 6 19 chr11 81243248 81243372 -40600484 - B1F1 SINE Alu -17 132 6 4 1204 237 269 30 0 chr11 81243378 81243445 -40600411 + MLT1E2 LTR MaLR 484 552 -72 4 1204 287 250 16 0 chr11 81243770 81243834 -40600022 + MIR SINE MIR 78 142 -120 4 1204 1327 247 35 116 chr11 81243836 81244294 -40599562 + MTC LTR MaLR 1 421 0 4 1204 38967 9 2 7 chr11 81244386 81249781 -40594075 + L1Md_A LINE L1 225 5586 -297 4 1204 9091 9 0 0 chr11 81249781 81250777 -40593079 + L1Md_A LINE L1 5587 6582 0 4 1204 1000 199 59 5 chr11 81250965 81251152 -40592704 + B3 SINE B2 14 210 -6 4 1204 932 134 6 0 chr11 81252065 81252222 -40591634 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 4 1204 267 217 0 0 chr11 81252224 81252284 -40591572 + C-rich Low_complexity Low_complexity 3 62 0 4 1204 405 292 128 28 chr11 81252921 81253139 -40590717 - MIRc SINE MIR -1 267 28 4 1204 302 210 73 12 chr11 81253513 81253595 -40590261 - MTEa LTR MaLR 0 379 293 4 1204 230 280 111 22 chr11 81254683 81254818 -40589038 + L4 LINE RTE 1861 2007 -22 4 1204 253 321 46 35 chr11 81255678 81255852 -40588004 + L2a LINE L2 3248 3423 -3 4 1204 241 297 0 15 chr11 81256245 81256310 -40587546 - MLT1L LTR MaLR -370 240 177 4 1204 1775 229 81 16 chr11 81256742 81257286 -40586570 + Lx7 LINE L1 6626 7225 -248 4 1204 657 279 145 16 chr11 81258203 81258458 -40585398 + RMER15 LTR ERVL 273 560 -15 4 1204 246 317 59 46 chr11 81258842 81258994 -40584862 + LTR16A1 LTR ERVL 285 438 -18 4 1204 274 333 53 26 chr11 81259126 81259240 -40584616 - L2a LINE L2 -21 3405 3289 4 1204 239 316 85 145 chr11 81261023 81261192 -40582664 - MIRc SINE MIR -27 241 81 4 1204 598 238 6 64 chr11 81261192 81261349 -40582507 + RSINE1 SINE B4 3 150 -15 4 1204 372 77 0 0 chr11 81261351 81261403 -40582453 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1204 239 316 85 145 chr11 81261403 81261478 -40582378 - MIRc SINE MIR -188 80 9 4 1204 1438 174 144 17 chr11 81261605 81261786 -40582070 + RMER17C LTR ERVK 1 188 -222 4 1204 1320 68 0 0 chr11 81261786 81261962 -40581894 + (TCTCCC)n Simple_repeat Simple_repeat 2 177 0 4 1204 971 120 0 6 chr11 81261964 81262123 -40581733 + (CCCCCT)n Simple_repeat Simple_repeat 5 162 0 4 1204 1438 174 144 17 chr11 81262123 81262300 -40581556 + RMER17C LTR ERVK 189 404 -6 4 1204 522 0 0 0 chr11 81262395 81262453 -40581403 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1204 345 312 9 52 chr11 81262561 81262676 -40581180 + MIRb SINE MIR 99 208 -60 4 1204 252 254 0 0 chr11 81262951 81263006 -40580850 - L3b LINE CR1 -420 62 8 4 1205 1335 40 0 0 chr11 81265169 81265343 -40578513 + (TG)n Simple_repeat Simple_repeat 2 175 0 4 1205 602 13 13 0 chr11 81265904 81265979 -40577877 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1205 351 0 0 0 chr11 81265986 81266025 -40577831 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1205 212 132 0 68 chr11 81266965 81267038 -40576818 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1205 191 229 97 16 chr11 81267249 81267311 -40576545 + L2c LINE L2 3000 3066 -321 4 1205 269 330 146 40 chr11 81268419 81268618 -40575238 - MLT1J2 LTR MaLR -223 225 6 4 1205 312 324 25 75 chr11 81268810 81268970 -40574886 + ORR1E LTR MaLR 39 190 -169 4 1205 378 240 16 32 chr11 81268977 81269224 -40574632 + CT-rich Low_complexity Low_complexity 1 242 0 4 1205 282 336 25 33 chr11 81269934 81270054 -40573802 - MIR SINE MIR -57 151 33 4 1205 453 36 0 0 chr11 81270087 81270142 -40573714 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1205 369 0 0 0 chr11 81270163 81270204 -40573652 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1205 228 273 63 77 chr11 81270538 81270681 -40573175 - MamRep434 DNA TcMar -39 387 247 4 1205 2213 228 101 28 chr11 81271632 81272238 -40571618 + Lx4B LINE L1 6409 7058 0 4 1205 218 261 14 68 chr11 81272375 81272449 -40571407 + L2a LINE L2 3357 3426 0 4 1205 189 0 0 0 chr11 81272817 81272838 -40571018 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 4 1205 293 292 70 17 chr11 81273708 81273823 -40570033 + L3 LINE CR1 4177 4297 -192 4 1205 2781 86 47 0 chr11 81274416 81274798 -40569058 + MTB LTR MaLR 1 400 0 4 1205 423 0 0 0 chr11 81275356 81275403 -40568453 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1205 432 236 0 0 chr11 81276088 81276198 -40567658 + C-rich Low_complexity Low_complexity 1 110 0 4 1205 2687 34 21 6 chr11 81276325 81276654 -40567202 + L1Md_F2 LINE L1 6245 6578 -4 4 1205 201 74 0 0 chr11 81276973 81277000 -40566856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1205 518 286 60 15 chr11 81277196 81277395 -40566461 + B3 SINE B2 1 208 -8 4 1205 23 33 0 0 chr11 81277401 81277431 -40566425 + AT_rich Low_complexity Low_complexity 1 30 0 4 1205 476 32 16 0 chr11 81278023 81278085 -40565771 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1205 557 301 66 29 chr11 81278153 81278427 -40565429 - MLT2B4 LTR ERVL -272 284 1 4 1205 405 0 0 0 chr11 81278873 81278918 -40564938 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1205 264 250 136 0 chr11 81279562 81279650 -40564206 - L1M5 LINE L1 -583 5541 5442 4 1205 307 348 36 30 chr11 81280249 81280415 -40563441 + MIR SINE MIR 13 179 -83 4 1205 314 279 7 12 chr11 81280697 81280832 -40563024 + B4A SINE B4 10 238 -54 4 1205 252 196 18 0 chr11 81280828 81280884 -40562972 - B3A SINE B2 -137 61 5 4 1205 360 0 0 0 chr11 81281033 81281073 -40562783 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1205 398 229 81 30 chr11 81281650 81281749 -40562107 + PB1D10 SINE Alu 7 110 -7 4 1205 3847 156 70 1 chr11 81282272 81282929 -40560927 - Lx4A LINE L1 -2 7056 6355 4 1205 351 264 0 52 chr11 81282931 81283027 -40560829 + MIR SINE MIR 107 197 -65 4 1205 213 268 0 11 chr11 81283348 81283419 -40560437 - MIR SINE MIR -128 148 81 4 1205 813 161 0 0 chr11 81283806 81283955 -40559901 + GA-rich Low_complexity Low_complexity 3 151 0 4 1205 423 238 24 0 chr11 81283955 81284080 -40559776 - MTEa LTR MaLR -55 324 195 4 1205 501 246 8 8 chr11 81284313 81284432 -40559424 - MTEa LTR MaLR -202 177 59 4 1205 245 299 115 0 chr11 81284434 81284521 -40559335 - MTEa LTR MaLR -282 97 1 4 1205 903 249 111 83 chr11 81284607 81284967 -40558889 + MTEa LTR MaLR 1 370 -9 4 1205 601 103 0 41 chr11 81284969 81285091 -40558765 + (GAGAA)n Simple_repeat Simple_repeat 4 120 0 4 1205 437 285 102 0 chr11 81285103 81285240 -40558616 + MTEa-int LTR MaLR 5 155 -1425 4 1205 607 264 54 0 chr11 81285243 81285391 -40558465 + MTEa-int LTR MaLR 274 429 -1151 4 1205 1065 39 0 0 chr11 81285392 81285522 -40558334 + (GGGAGA)n Simple_repeat Simple_repeat 5 134 0 4 1205 916 268 118 52 chr11 81285538 81285904 -40557952 + MTEa-int LTR MaLR 479 868 -712 4 1205 699 99 0 0 chr11 81285904 81286005 -40557851 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 4 1205 1295 164 68 0 chr11 81286022 81286242 -40557614 - Lx5 LINE L1 -83 6967 6733 4 1205 608 238 18 30 chr11 81286242 81286407 -40557449 + MTEa-int LTR MaLR 856 1018 -562 4 1205 825 259 79 17 chr11 81286377 81286617 -40557239 + MTEa-int LTR MaLR 1324 1578 -2 4 1205 1338 253 23 49 chr11 81286622 81287009 -40556847 + MTEa LTR MaLR 3 379 0 4 1205 198 0 0 0 chr11 81287247 81287269 -40556587 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1205 456 182 0 0 chr11 81287425 81287513 -40556343 + GA-rich Low_complexity Low_complexity 2 89 0 4 1205 226 146 0 0 chr11 81287547 81287588 -40556268 + 5S rRNA rRNA 2 42 -79 4 1205 303 274 24 0 chr11 81288174 81288258 -40555598 + LTR33B LTR ERVL 66 151 -352 4 1205 604 306 66 58 chr11 81289133 81289407 -40554449 - B4 SINE B4 -11 281 6 4 1205 438 127 0 0 chr11 81289800 81289871 -40553985 + (TCC)n Simple_repeat Simple_repeat 3 73 0 4 1205 706 268 83 81 chr11 81290540 81291092 -40552764 - L1M3 LINE L1 -446 5734 5175 4 1205 526 268 105 79 chr11 81291573 81291840 -40552016 - B4 SINE B4 -11 281 8 4 1205 334 221 0 0 chr11 81292675 81292743 -40551113 + B3A SINE B2 3 70 -128 4 1205 642 292 15 44 chr11 81292982 81293186 -40550670 - ID_B1 SINE B4 -3 221 24 4 1205 430 251 88 18 chr11 81293216 81293386 -40550470 + Charlie7 DNA MER1_type 1660 1841 -771 4 1205 423 0 0 0 chr11 81293438 81293485 -40550371 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1205 294 29 0 0 chr11 81293870 81293905 -40549951 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1205 189 175 0 0 chr11 81294481 81294521 -40549335 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1205 276 30 0 0 chr11 81294523 81294556 -40549300 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1205 21 0 0 0 chr11 81294777 81294798 -40549058 + GC_rich Low_complexity Low_complexity 1 21 0 4 1205 3903 180 74 45 chr11 81294902 81295407 -40548449 + RLTR25B LTR ERVK 1 498 -530 4 1205 225 0 0 0 chr11 81295407 81295432 -40548424 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 4 1205 3903 180 74 45 chr11 81295432 81295790 -40548066 + RLTR25B LTR ERVK 499 884 -144 4 1205 1005 147 0 0 chr11 81295790 81295960 -40547896 + (GGA)n Simple_repeat Simple_repeat 2 171 0 4 1205 3903 180 74 45 chr11 81295960 81296094 -40547762 + RLTR25B LTR ERVK 885 1027 -1 4 1205 187 242 29 29 chr11 81296115 81296183 -40547673 - MIRb SINE MIR -80 188 121 4 1205 448 246 31 8 chr11 81296480 81296607 -40547249 + MIR SINE MIR 131 260 -2 4 1205 191 204 0 18 chr11 81296669 81296724 -40547132 + CT-rich Low_complexity Low_complexity 4 57 0 4 1205 423 0 0 0 chr11 81296819 81296866 -40546990 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1205 237 218 0 0 chr11 81297084 81297162 -40546694 + GA-rich Low_complexity Low_complexity 2 79 0 4 1205 7013 140 42 50 chr11 81297193 81298415 -40545441 + RMER12B LTR ERVK 1 1259 -145 4 1205 541 50 25 12 chr11 81298415 81298496 -40545360 + (TATG)n Simple_repeat Simple_repeat 3 84 0 4 1205 7013 140 42 50 chr11 81298496 81298533 -40545323 + RMER12B LTR ERVK 1260 1274 -130 4 1205 432 0 0 0 chr11 81298533 81298581 -40545275 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1205 7013 140 42 50 chr11 81298581 81298735 -40545121 + RMER12B LTR ERVK 1275 1404 0 4 1205 358 119 0 0 chr11 81299070 81299137 -40544719 - B2_Mm1a SINE B2 0 193 127 4 1205 288 0 0 0 chr11 81299210 81299242 -40544614 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 4 1205 1129 89 0 0 chr11 81299243 81299401 -40544455 - B2_Mm2 SINE B2 -37 158 1 4 1205 201 74 0 0 chr11 81300279 81300306 -40543550 + (CCTG)n Simple_repeat Simple_repeat 1 27 0 4 1205 217 219 0 0 chr11 81301139 81301180 -40542676 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 5 1205 978 137 7 0 chr11 81301382 81301528 -40542328 + B1_Mus1 SINE Alu 1 147 -1 5 1205 468 81 0 0 chr11 81301529 81301603 -40542253 + (CAAAA)n Simple_repeat Simple_repeat 1 74 0 5 1205 213 303 0 13 chr11 81301839 81301916 -40541940 + (CATA)n Simple_repeat Simple_repeat 1 76 0 5 1205 204 40 0 0 chr11 81302184 81302209 -40541647 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1205 295 327 55 6 chr11 81304503 81304666 -40539190 + MIRb SINE MIR 52 222 -46 5 1205 372 247 10 88 chr11 81304881 81304983 -40538873 + MTEb LTR MaLR 1 94 -285 5 1205 380 294 104 7 chr11 81305634 81305778 -40538078 + B3A SINE B2 3 160 -38 5 1205 348 24 0 0 chr11 81305781 81305822 -40538034 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1205 297 363 23 40 chr11 81306710 81306885 -40536971 + B4A SINE B4 1 172 -120 5 1205 232 260 27 14 chr11 81306956 81307030 -40536826 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1205 3325 66 0 2 chr11 81307084 81307492 -40536364 - MTB_Mm LTR MaLR 0 407 1 5 1205 224 236 0 0 chr11 81307492 81307547 -40536309 + T-rich Low_complexity Low_complexity 1 55 0 5 1205 2319 179 51 6 chr11 81307632 81308126 -40535730 + RLTR11A2 LTR ERVK 12 527 0 5 1205 230 287 6 6 chr11 81310339 81310500 -40533356 + GA-rich Low_complexity Low_complexity 1 161 0 5 1205 450 0 0 0 chr11 81311709 81311759 -40532097 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1205 295 276 92 33 chr11 81312007 81312127 -40531729 + RSINE1 SINE B4 4 130 -35 5 1205 1438 226 206 97 chr11 81312626 81313464 -40530392 + RMER17B LTR ERVK 1 930 -28 5 1205 267 319 25 25 chr11 81314482 81314601 -40529255 + MER104 DNA Tc2 13 131 -50 5 1205 191 61 30 0 chr11 81314904 81314937 -40528919 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1205 1257 303 17 17 chr11 81315520 81316038 -40527818 - Helitron1Na_Mam RC Helitron -490 572 55 5 1205 1091 56 0 14 chr11 81316146 81316292 -40527564 + B2_Mm2 SINE B2 3 146 -49 5 1205 288 0 0 0 chr11 81316292 81316324 -40527532 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 1205 283 318 1 11 chr11 81316512 81316627 -40527229 - MIR SINE MIR -116 152 37 5 1205 365 181 41 14 chr11 81316910 81316983 -40526873 + ID4 SINE ID 1 75 -8 5 1205 372 389 0 0 chr11 81317404 81317566 -40526290 - MIRb SINE MIR -78 190 29 5 1205 295 226 50 70 chr11 81318878 81318978 -40524878 - ORR1E LTR MaLR -4 375 261 5 1205 565 288 0 0 chr11 81318974 81319106 -40524750 - ORR1E LTR MaLR -226 133 2 5 1205 753 266 40 40 chr11 81319141 81319263 -40524593 + ID_B1 SINE B4 17 134 -90 5 1205 3463 38 2 0 chr11 81319263 81319658 -40524198 - MTA_Mm LTR MaLR 0 396 1 5 1205 8984 47 8 2 chr11 81319658 81320749 -40523107 - MTA_Mm-int LTR MaLR 0 1098 1 5 1205 3048 55 42 0 chr11 81320749 81321129 -40522727 - MTA_Mm LTR MaLR 0 396 1 5 1205 753 266 40 40 chr11 81321129 81321204 -40522652 + ID_B1 SINE B4 135 214 -10 5 1205 433 209 17 19 chr11 81321237 81321345 -40522511 + PB1D10 SINE Alu 3 116 -1 5 1205 331 241 49 57 chr11 81322712 81322835 -40521021 + L1MD LINE L1 3922 4043 -2103 5 1205 2331 120 59 57 chr11 81322840 81323299 -40520557 + RMER4A LTR ERVK 1 460 -6 5 1205 765 151 0 141 chr11 81323303 81323488 -40520368 + RMER4A LTR ERVK 308 466 0 5 1205 617 284 81 18 chr11 81323488 81323771 -40520085 + L1MD LINE L1 4043 4343 -1803 5 1205 237 289 24 24 chr11 81323785 81323870 -40519986 - MTEb LTR MaLR -17 362 278 5 1205 821 292 13 139 chr11 81323928 81324281 -40519575 + MTE2a LTR MaLR 40 346 -33 5 1205 297 0 0 0 chr11 81324281 81324314 -40519542 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1205 821 292 13 139 chr11 81324314 81324349 -40519507 + MTE2a LTR MaLR 347 379 0 5 1205 385 316 19 15 chr11 81324408 81324595 -40519261 - MTEb LTR MaLR -124 255 60 5 1205 27 29 0 0 chr11 81324685 81324719 -40519137 + AT_rich Low_complexity Low_complexity 1 34 0 5 1205 524 271 92 25 chr11 81324792 81325030 -40518826 + L1MD LINE L1 4479 4732 -1414 5 1205 285 29 0 0 chr11 81325332 81325366 -40518490 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1205 547 203 49 108 chr11 81325371 81325575 -40518281 + L1MC4a LINE L1 7685 7876 -6 5 1205 205 184 75 0 chr11 81328079 81328142 -40515714 - MIRc SINE MIR -88 180 111 5 1205 560 252 151 55 chr11 81328150 81328368 -40515488 + B4 SINE B4 5 243 -49 5 1205 1465 191 111 21 chr11 81328420 81328799 -40515057 - RMER20A LTR ERVK 0 516 104 5 1205 342 0 0 0 chr11 81329333 81329371 -40514485 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1205 348 24 0 0 chr11 81329371 81329411 -40514445 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1205 797 269 47 0 chr11 81331087 81331280 -40512576 + ID_B1 SINE B4 1 202 -22 5 1205 275 262 34 45 chr11 81332955 81333043 -40510813 - MLT1A1 LTR MaLR -309 99 13 5 1205 209 264 0 19 chr11 81334592 81334646 -40509210 + CT-rich Low_complexity Low_complexity 1 53 0 5 1205 1078 244 44 29 chr11 81334859 81335133 -40508723 + B4 SINE B4 1 278 -14 5 1205 328 284 118 26 chr11 81335380 81335532 -40508324 - MIRb SINE MIR -34 234 69 5 1205 663 57 0 0 chr11 81336180 81336268 -40507588 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1205 280 341 96 52 chr11 81336377 81336649 -40507207 + L2b LINE L2 2972 3255 -132 5 1205 541 316 88 81 chr11 81336716 81337136 -40506720 + Charlie7 DNA MER1_type 32 454 -2158 5 1205 1337 251 83 11 chr11 81338534 81338885 -40504971 - MTE2a LTR MaLR -1 378 3 5 1205 221 305 93 19 chr11 81339174 81339281 -40504575 + MIRc SINE MIR 154 268 0 5 1205 1108 112 34 16 chr11 81339846 81340166 -40503690 + (TAGA)n Simple_repeat Simple_repeat 1 326 0 5 1205 411 66 26 13 chr11 81340296 81340373 -40503483 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 5 1205 240 361 23 76 chr11 81341287 81341419 -40502437 + RSINE1 SINE B4 3 127 -38 5 1205 507 107 0 0 chr11 81341442 81341517 -40502339 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1205 335 172 0 0 chr11 81341570 81341628 -40502228 - PB1D9 SINE Alu -2 118 61 5 1205 1441 206 39 56 chr11 81342176 81342531 -40501325 - ORR1E LTR MaLR -10 349 1 5 1205 281 281 24 0 chr11 81342860 81342942 -40500914 + (CATATA)n Simple_repeat Simple_repeat 4 87 0 5 1205 4190 153 201 43 chr11 81342943 81343080 -40500776 - RLTR25B LTR ERVK -201 827 799 5 1205 456 19 0 0 chr11 81343080 81343133 -40500723 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1205 4190 142 65 67 chr11 81343133 81343911 -40499945 - RLTR25B LTR ERVK -230 798 17 5 1205 250 271 217 16 chr11 81343910 81344094 -40499762 - RMER12 LTR ERVK -365 957 737 5 1205 496 290 10 80 chr11 81344657 81344856 -40499000 + RMER15 LTR ERVL 306 490 -85 5 1205 189 0 0 0 chr11 81344899 81344920 -40498936 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1205 987 50 38 0 chr11 81344920 81345078 -40498778 + (GA)n Simple_repeat Simple_repeat 2 166 0 5 1205 911 251 42 109 chr11 81346285 81346598 -40497258 + B4A SINE B4 1 292 0 5 1205 608 177 23 0 chr11 81346618 81346793 -40497063 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1205 211 286 101 10 chr11 81347264 81347363 -40496493 - MIR3 SINE MIR -11 197 90 5 1205 471 312 69 11 chr11 81348089 81348277 -40495579 - MIRb SINE MIR -8 260 62 5 1205 239 279 188 30 chr11 81348386 81348519 -40495337 + MIRb SINE MIR 14 167 -101 5 1205 239 321 12 0 chr11 81348607 81348691 -40495165 + MIR SINE MIR 173 257 -5 5 1205 403 265 118 0 chr11 81348768 81348904 -40494952 - B4 SINE B4 -139 153 2 5 1205 384 316 81 30 chr11 81349099 81349416 -40494440 - L2c LINE L2 -196 3191 2856 5 1205 233 295 152 47 chr11 81349980 81350236 -40493620 + RLTR22_Mus LTR ERVK 572 854 -954 5 1205 456 290 55 12 chr11 81350545 81350709 -40493147 - MER20 DNA MER1_type -4 215 45 5 1205 570 250 71 127 chr11 81351822 81352176 -40491680 - ORR1E LTR MaLR 0 379 20 5 1205 772 289 138 60 chr11 81352253 81352366 -40491490 - MLT1C LTR MaLR -3 464 344 5 1205 817 215 77 39 chr11 81352366 81352574 -40491282 + B3 SINE B2 1 216 0 5 1205 772 289 138 60 chr11 81352574 81352873 -40490983 - MLT1C LTR MaLR -124 343 20 5 1205 257 214 18 0 chr11 81353167 81353223 -40490633 + C-rich Low_complexity Low_complexity 3 59 0 5 1205 643 323 59 17 chr11 81354970 81355260 -40488596 + Lx8 LINE L1 6741 7042 -431 5 1205 261 394 55 46 chr11 81356207 81356425 -40487431 + MIRb SINE MIR 30 249 -19 5 1205 452 291 91 70 chr11 81358631 81358960 -40484896 + MLT1C LTR MaLR 91 426 -41 5 1205 3210 5 5 45 chr11 81358982 81359364 -40484492 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1205 56382 21 17 13 chr11 81359364 81365811 -40478045 + IAPEz-int LTR ERVK 8 6481 0 5 1205 3224 3 5 45 chr11 81365811 81366193 -40477663 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1205 428 351 104 57 chr11 81366334 81366787 -40477069 - MLT1H2 LTR MaLR -14 475 2 5 1205 227 305 50 8 chr11 81366854 81366973 -40476883 - L1MC LINE L1 -2054 5828 5705 5 1205 424 290 0 27 chr11 81366988 81367098 -40476758 + PB1D10 SINE Alu 11 117 0 5 1205 385 320 106 41 chr11 81367110 81367478 -40476378 - L1MC LINE L1 -2172 5710 5319 5 1205 329 291 80 81 chr11 81367789 81368099 -40475757 + MTE2a LTR MaLR 77 379 -5 5 1205 719 160 0 83 chr11 81368312 81368326 -40475530 - B1_Mus1 SINE Alu -2 146 136 5 1205 219 36 0 0 chr11 81368326 81368354 -40475502 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 5 1205 719 160 0 83 chr11 81368354 81368496 -40475360 - B1_Mus1 SINE Alu -13 135 3 5 1205 500 302 28 21 chr11 81368721 81368863 -40474993 + B1F SINE Alu 7 149 0 5 1205 7936 66 2 14 chr11 81369264 81371018 -40472838 + L1_Mus2 LINE L1 4834 6565 -1 5 1205 208 156 0 0 chr11 81371037 81371069 -40472787 + A-rich Low_complexity Low_complexity 1 32 0 5 1205 432 0 0 0 chr11 81371265 81371313 -40472543 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 5 1205 463 242 40 32 chr11 81371316 81371440 -40472416 - ID_B1 SINE B4 -9 215 91 5 1205 503 309 12 58 chr11 81372246 81372418 -40471438 + RSINE1 SINE B4 2 165 0 5 1205 198 207 0 0 chr11 81372428 81372486 -40471370 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1205 233 289 39 26 chr11 81372814 81372892 -40470964 - MLT1M LTR MaLR 0 672 594 5 1205 268 222 278 0 chr11 81373414 81373504 -40470352 + PB1D10 SINE Alu 3 117 0 5 1205 598 170 0 29 chr11 81373511 81373650 -40470206 + GA-rich Low_complexity Low_complexity 2 136 0 5 1205 651 88 0 0 chr11 81373692 81373783 -40470073 + (GGA)n Simple_repeat Simple_repeat 1 91 0 6 1205 548 238 2 7 chr11 81374753 81375193 -40468663 + (TG)n Simple_repeat Simple_repeat 1 437 0 6 1205 317 274 28 47 chr11 81375403 81375510 -40468346 + PB1D10 SINE Alu 2 106 -11 6 1205 335 330 50 55 chr11 81375800 81375999 -40467857 - HAL1 LINE L1 -298 2209 2012 6 1205 525 208 119 30 chr11 81376046 81376180 -40467676 - ID_B1 SINE B4 0 224 79 6 1205 203 247 14 0 chr11 81376525 81376598 -40467258 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 6 1205 566 28 0 0 chr11 81376643 81376715 -40467141 - L1Md_T LINE L1 -12 6570 6499 6 1205 3120 73 0 5 chr11 81376721 81377119 -40466737 - MTA_Mm LTR MaLR 0 396 1 6 1205 333 344 179 53 chr11 81377154 81377673 -40466183 - HAL1 LINE L1 -904 1603 1004 6 1205 307 104 0 0 chr11 81377673 81377721 -40466135 - Lx4A LINE L1 0 7058 7011 6 1205 333 344 179 53 chr11 81377721 81377821 -40466035 - HAL1 LINE L1 -1504 1003 906 6 1205 343 338 124 76 chr11 81379723 81380053 -40463803 + L1MEd LINE L1 358 703 -5416 6 1205 405 0 0 0 chr11 81380779 81380824 -40463032 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1205 1392 56 0 0 chr11 81381105 81381283 -40462573 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 1205 668 156 8 0 chr11 81381283 81381411 -40462445 + GA-rich Low_complexity Low_complexity 3 131 0 6 1205 2440 99 3 0 chr11 81381509 81381832 -40462024 + ORR1A2 LTR MaLR 4 327 0 6 1205 3185 65 5 0 chr11 81382567 81382965 -40460891 + MTB LTR MaLR 1 400 0 6 1205 262 289 106 43 chr11 81383775 81383916 -40459940 + MIR3 SINE MIR 58 207 -1 6 1205 1169 319 47 33 chr11 81384454 81384943 -40458913 + MLT1D LTR MaLR 10 505 0 6 1205 786 220 26 20 chr11 81385160 81385313 -40458543 + B3 SINE B2 63 216 0 6 1205 253 287 79 60 chr11 81385413 81385665 -40458191 - HAL1 LINE L1 -312 2195 1939 6 1205 258 32 0 0 chr11 81385782 81385813 -40458043 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1205 447 233 0 17 chr11 81385816 81385995 -40457861 + (TA)n Simple_repeat Simple_repeat 1 176 0 6 1205 253 265 20 0 chr11 81387035 81387084 -40456772 + ID SINE ID 29 78 -146 6 1205 234 105 0 0 chr11 81387114 81387152 -40456704 + (CG)n Simple_repeat Simple_repeat 2 39 0 6 1205 255 79 0 0 chr11 81387152 81387189 -40456667 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1205 180 91 44 22 chr11 81387226 81387271 -40456585 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1205 32 0 0 0 chr11 81387288 81387320 -40456536 + AT_rich Low_complexity Low_complexity 1 32 0 6 1205 428 77 15 0 chr11 81387331 81387396 -40456460 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1205 388 299 200 62 chr11 81387562 81387648 -40456208 - HAL1 LINE L1 -940 1567 1478 6 1205 288 0 0 0 chr11 81387648 81387680 -40456176 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1205 447 19 0 0 chr11 81387680 81387731 -40456125 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1205 388 299 200 62 chr11 81387731 81387903 -40455953 - HAL1 LINE L1 -1030 1477 1273 6 1205 865 263 24 28 chr11 81388024 81388235 -40455621 - B3 SINE B2 -1 215 6 6 1205 387 211 0 0 chr11 81388251 81388346 -40455510 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1205 404 379 71 37 chr11 81388421 81388799 -40455057 - HAL1 LINE L1 -1487 1020 630 6 1205 527 313 64 64 chr11 81388850 81389318 -40454538 - HAL1 LINE L1 -1986 521 54 6 1205 481 253 107 40 chr11 81390309 81390486 -40453370 + MLT1D LTR MaLR 311 499 -6 6 1205 1580 175 104 13 chr11 81390474 81390781 -40453075 + MTC LTR MaLR 79 413 -8 6 1205 251 336 54 15 chr11 81391262 81391392 -40452464 - MLT1C LTR MaLR -257 210 76 6 1205 297 0 0 0 chr11 81391673 81391706 -40452150 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1205 362 0 0 59 chr11 81391789 81391840 -40452016 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 1205 713 281 100 57 chr11 81392068 81392347 -40451509 - B4A SINE B4 -1 291 1 6 1205 297 268 50 40 chr11 81394307 81394408 -40449448 + MTE2b LTR MaLR 3 104 -255 6 1205 300 214 22 67 chr11 81394476 81394566 -40449290 + MTE2b LTR MaLR 279 364 -15 6 1205 466 71 0 0 chr11 81394585 81394641 -40449215 + L1Md_F2 LINE L1 5487 5542 -341 6 1205 8093 48 0 4 chr11 81394641 81395617 -40448239 + L1Md_F2 LINE L1 5599 6570 -12 6 1205 266 275 0 42 chr11 81395617 81395632 -40448224 + L1MC LINE L1 5569 5581 -2301 6 1206 215 197 25 38 chr11 81395888 81395967 -40447889 + (CTTAT)n Simple_repeat Simple_repeat 2 79 0 6 1206 302 222 0 31 chr11 81397301 81397366 -40446490 - Zaphod2 DNA Tip100 -3314 210 148 6 1206 277 342 32 24 chr11 81397817 81397940 -40445916 - MIRc SINE MIR -19 249 126 6 1206 246 62 0 0 chr11 81398662 81398694 -40445162 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 6 1206 495 358 102 64 chr11 81398738 81399111 -40444745 + MLT1I LTR MaLR 1 387 -24 6 1206 224 353 132 35 chr11 81399318 81399515 -40444341 - L2a LINE L2 -190 3236 3021 6 1206 327 261 102 72 chr11 81399632 81400015 -40443841 + L1M5 LINE L1 5263 5667 -506 6 1206 252 0 0 0 chr11 81400136 81400164 -40443692 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 6 1206 270 69 34 17 chr11 81400211 81400270 -40443586 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1206 1120 95 0 0 chr11 81400271 81400418 -40443438 - B1_Mus1 SINE Alu 0 148 2 6 1206 233 98 0 24 chr11 81400514 81400556 -40443300 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 6 1206 269 279 167 51 chr11 81400838 81401053 -40442803 - L2a LINE L2 -812 2607 2368 6 1206 220 200 33 16 chr11 81401088 81401149 -40442707 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 6 1206 492 18 0 0 chr11 81401150 81401207 -40442649 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1206 289 292 54 13 chr11 81401289 81401438 -40442418 - L1MA6 LINE L1 -49 6251 6097 6 1206 215 337 35 106 chr11 81401967 81402166 -40441690 + MIRm SINE MIR 34 218 -58 6 1206 769 250 191 53 chr11 81402544 81402920 -40440936 + RMER10A LTR ERVL 1 428 -14 6 1206 340 261 11 11 chr11 81403604 81403693 -40440163 + Charlie23a DNA MER1_type 164 252 -87 6 1206 717 321 18 9 chr11 81404020 81404240 -40439616 - ID_B1 SINE B4 -1 223 2 6 1206 352 327 115 74 chr11 81404398 81404954 -40438902 + MER34A LTR ERV1 1 582 -5 6 1206 219 179 0 0 chr11 81406257 81406296 -40437560 - MIRc SINE MIR -123 145 107 6 1206 247 367 23 124 chr11 81406461 81406719 -40437137 - MamRep434 DNA TcMar -93 333 102 6 1206 359 344 53 80 chr11 81406784 81407122 -40436734 - MamRep434 DNA TcMar 0 426 98 6 1206 500 338 95 9 chr11 81408388 81408714 -40435142 + L2 LINE L2 1182 1535 -1884 6 1206 227 258 143 22 chr11 81409012 81409103 -40434753 + MLT1B LTR MaLR 10 111 -279 6 1206 277 292 90 0 chr11 81409111 81409200 -40434656 + RMER12 LTR ERVK 724 820 -502 6 1206 192 298 191 9 chr11 81409532 81409647 -40434209 + L2b LINE L2 3240 3375 0 6 1206 381 123 0 0 chr11 81410129 81410194 -40433662 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 6 1206 2602 156 36 31 chr11 81410255 81410776 -40433080 - RLTR28 LTR ERVL 0 524 1 6 1206 953 212 38 24 chr11 81411368 81411580 -40432276 - B3 SINE B2 0 216 2 6 1206 1060 274 34 42 chr11 81413364 81413742 -40430114 - MTE2b LTR MaLR 0 379 5 6 1206 268 288 37 12 chr11 81414143 81414224 -40429632 + MTEa LTR MaLR 293 375 -4 6 1206 903 121 0 0 chr11 81414383 81414523 -40429333 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 6 1206 252 381 101 0 chr11 81415925 81416093 -40427763 + MIRc SINE MIR 35 219 -49 6 1206 302 284 25 0 chr11 81416958 81417039 -40426817 - ID4 SINE ID 0 83 1 6 1206 214 125 0 59 chr11 81417397 81417465 -40426391 + T-rich Low_complexity Low_complexity 3 66 0 6 1206 1192 42 7 0 chr11 81417466 81417608 -40426248 - B1_Mus2 SINE Alu 0 147 5 6 1206 340 300 44 0 chr11 81417618 81417708 -40426148 - B1F1 SINE Alu -51 98 5 6 1206 264 310 10 20 chr11 81417848 81417950 -40425906 + L1M4b LINE L1 1083 1183 -6151 6 1206 462 296 43 70 chr11 81417976 81418161 -40425695 + L1M4b LINE L1 1264 1471 -5433 6 1206 276 324 80 16 chr11 81418270 81418612 -40425244 + L1M4b LINE L1 1651 2033 -4871 6 1206 1645 264 34 32 chr11 81418625 81419125 -40424731 + RLTR11A2 LTR ERVK 10 510 -17 6 1206 414 283 272 12 chr11 81419152 81419402 -40424454 + L1M4b LINE L1 2010 2324 -5010 6 1206 6892 162 2 54 chr11 81419403 81420720 -40423136 - L1_Mm LINE L1 -298 5585 4337 6 1206 412 292 19 58 chr11 81420791 81420947 -40422909 + L1M4b LINE L1 1741 1890 -5119 6 1206 8077 89 0 2 chr11 81420955 81422065 -40421791 + L1_Mus4 LINE L1 5528 6635 -1 6 1206 1011 228 5 14 chr11 81422070 81422288 -40421568 + B3 SINE B2 1 216 0 6 1206 530 235 0 0 chr11 81422384 81422486 -40421370 + PB1D10 SINE Alu 3 104 -13 6 1206 213 39 0 0 chr11 81422489 81422515 -40421341 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 6 1206 280 206 20 40 chr11 81422536 81422637 -40421219 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 1206 1405 262 216 17 chr11 81422781 81423887 -40419969 + L1M4b LINE L1 2569 3662 -3672 6 1206 187 339 0 0 chr11 81424135 81424197 -40419659 - MIR SINE MIR -102 160 99 6 1206 299 303 10 20 chr11 81427430 81427531 -40416325 + PB1D10 SINE Alu 1 100 -17 6 1206 453 155 0 0 chr11 81428022 81428044 -40415812 + polypyrimidine Low_complexity Low_complexity 64 85 0 6 1206 1279 74 51 11 chr11 81428044 81428222 -40415634 - B2_Mm2 SINE B2 -10 185 1 6 1206 453 155 0 0 chr11 81428222 81428283 -40415573 + polypyrimidine Low_complexity Low_complexity 3 63 0 6 1206 241 341 118 9 chr11 81428571 81428799 -40415057 + L1MC LINE L1 5361 5613 -720 6 1206 239 354 0 47 chr11 81428900 81428986 -40414870 - RMER30 DNA MER1_type -116 86 5 6 1206 278 406 0 10 chr11 81429426 81429523 -40414333 - B4 SINE B4 -88 204 109 6 1206 1071 77 14 0 chr11 81429526 81429749 -40414107 + (TC)n Simple_repeat Simple_repeat 1 226 0 6 1206 1167 158 14 29 chr11 81429784 81429992 -40413864 + Lx5 LINE L1 6712 6916 -134 6 1206 1031 325 57 69 chr11 81430464 81431171 -40412685 + Zaphod DNA Tip100 3301 3998 -33 6 1206 711 314 39 14 chr11 81431211 81431418 -40412438 - B4 SINE B4 0 292 81 6 1206 680 239 194 0 chr11 81431431 81431611 -40412245 - B3 SINE B2 0 216 2 6 1206 706 113 42 42 chr11 81431670 81431790 -40412066 - B3 SINE B2 -86 130 11 6 1206 460 206 0 85 chr11 81431799 81431905 -40411951 - B4 SINE B4 -190 102 6 6 1206 2211 182 101 16 chr11 81432027 81432513 -40411343 - RLTR11A2 LTR ERVK 0 527 1 7 1206 360 0 0 0 chr11 81434688 81434728 -40409128 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1206 396 255 115 93 chr11 81434736 81434918 -40408938 - B4 SINE B4 -1 291 106 7 1206 186 270 0 0 chr11 81434926 81434989 -40408867 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 1206 1066 210 10 0 chr11 81434996 81435191 -40408665 - B3 SINE B2 -19 197 1 7 1206 302 250 14 27 chr11 81435200 81435274 -40408582 - B4 SINE B4 -219 73 1 7 1206 455 363 43 70 chr11 81435274 81435507 -40408349 + MLT1I LTR MaLR 90 314 -97 7 1206 423 0 0 0 chr11 81435638 81435685 -40408171 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 7 1206 201 39 0 0 chr11 81435685 81435710 -40408146 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1206 520 267 51 15 chr11 81435716 81435853 -40408003 - B3A SINE B2 -56 142 1 7 1206 326 315 39 0 chr11 81436400 81436530 -40407326 - LTR78 LTR ERV1 -118 1186 1052 7 1206 644 263 31 16 chr11 81436769 81436962 -40406894 - B3A SINE B2 -1 197 2 7 1206 186 43 0 0 chr11 81438097 81438120 -40405736 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1206 216 210 48 0 chr11 81438133 81438195 -40405661 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1206 417 173 47 18 chr11 81438220 81438391 -40405465 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 1206 214 154 51 13 chr11 81438420 81438499 -40405357 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 1206 319 274 12 12 chr11 81439994 81440079 -40403777 + MTD LTR MaLR 8 92 -327 7 1206 279 0 0 0 chr11 81441558 81441589 -40402267 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1206 609 312 0 0 chr11 81441591 81441732 -40402124 - B1F1 SINE Alu -8 141 1 7 1206 543 213 0 0 chr11 81442859 81443000 -40400856 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 1206 585 218 0 0 chr11 81443013 81443178 -40400678 + (TG)n Simple_repeat Simple_repeat 1 165 0 7 1206 539 222 0 22 chr11 81443212 81443396 -40400460 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1206 1293 212 118 40 chr11 81443621 81443969 -40399887 - MTE2b LTR MaLR -4 375 1 7 1206 270 184 26 13 chr11 81444090 81444167 -40399689 + CT-rich Low_complexity Low_complexity 4 81 0 7 1206 626 200 17 0 chr11 81444263 81444383 -40399473 + MTD LTR MaLR 24 145 -274 7 1206 328 114 0 0 chr11 81444379 81444423 -40399433 + MTD LTR MaLR 376 419 0 7 1206 1850 208 113 52 chr11 81444423 81444946 -40398910 + MTD-int LTR MaLR 1 555 -703 7 1206 414 0 0 0 chr11 81444947 81444993 -40398863 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1206 214 237 171 0 chr11 81445013 81445089 -40398767 + MIRc SINE MIR 88 176 -92 7 1206 483 220 228 19 chr11 81445412 81445574 -40398282 - B3A SINE B2 -2 196 1 7 1206 182 266 73 59 chr11 81446064 81446132 -40397724 - L2 LINE L2 -1844 1575 1507 7 1206 275 312 0 13 chr11 81446612 81446690 -40397166 + PB1D10 SINE Alu 5 81 -36 7 1206 3259 51 5 5 chr11 81446774 81447170 -40396686 - MTA_Mm LTR MaLR 0 396 1 7 1206 291 85 0 0 chr11 81447221 81447268 -40396588 + (T)n Simple_repeat Simple_repeat 1 47 0 7 1206 1167 75 0 0 chr11 81447268 81447415 -40396441 - B1_Mus2 SINE Alu 0 147 1 7 1206 25 0 0 0 chr11 81447425 81447450 -40396406 + AT_rich Low_complexity Low_complexity 1 25 0 7 1206 317 284 69 28 chr11 81447618 81447763 -40396093 + MIRb SINE MIR 26 176 -92 7 1206 180 326 0 20 chr11 81447984 81448034 -40395822 + MIRm SINE MIR 212 260 -16 7 1206 349 188 0 0 chr11 81448054 81448118 -40395738 + HAL1-3A_ME LINE L1 1975 2038 -820 7 1206 465 66 0 0 chr11 81448297 81448358 -40395498 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 7 1206 310 192 82 0 chr11 81449547 81449620 -40394236 + MIRc SINE MIR 70 148 -120 7 1206 781 299 20 9 chr11 81450432 81450722 -40393134 - L1MD LINE L1 -945 5201 4921 7 1206 185 245 38 0 chr11 81450762 81450815 -40393041 + L2 LINE L2 2806 2860 -559 7 1206 229 377 52 9 chr11 81451226 81451341 -40392515 + MIR SINE MIR 34 153 -109 7 1206 317 316 74 62 chr11 81451468 81451630 -40392226 + Charlie15a DNA MER1_type 59 222 -2 7 1206 245 353 37 47 chr11 81452036 81452143 -40391713 + MIRc SINE MIR 40 145 -123 7 1206 506 252 125 25 chr11 81452409 81452649 -40391207 - MER33 DNA MER1_type -27 297 34 7 1206 356 249 47 44 chr11 81452654 81452778 -40391078 + B3A SINE B2 28 160 -38 7 1206 290 196 0 67 chr11 81453257 81453317 -40390539 + MLT1B LTR MaLR 331 386 -4 7 1206 240 341 33 0 chr11 81453373 81453464 -40390392 - MIRb SINE MIR -129 139 46 7 1206 760 246 109 72 chr11 81453717 81453993 -40389863 + B4 SINE B4 7 292 0 7 1206 417 193 22 0 chr11 81454015 81454150 -40389706 + (CA)n Simple_repeat Simple_repeat 1 138 0 7 1206 472 219 6 11 chr11 81454168 81454348 -40389508 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1206 277 276 131 23 chr11 81454467 81454597 -40389259 - MIRb SINE MIR -2 266 123 7 1206 360 0 0 0 chr11 81454635 81454675 -40389181 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1206 1549 314 122 52 chr11 81454693 81455775 -40388081 + Arthur1B DNA Tip100 43 1202 -23 7 1206 207 0 0 0 chr11 81455971 81455994 -40387862 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 7 1206 368 311 52 60 chr11 81456403 81456622 -40387234 + MLT1E3 LTR MaLR 39 306 -347 7 1206 414 0 0 0 chr11 81456713 81456759 -40387097 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1206 423 0 0 0 chr11 81456759 81456805 -40387051 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1206 251 356 0 19 chr11 81456862 81456965 -40386891 + MLT2B1 LTR ERVL 463 563 -4 7 1206 266 247 0 11 chr11 81458608 81458702 -40385154 + (TA)n Simple_repeat Simple_repeat 2 94 0 7 1206 468 153 0 0 chr11 81458780 81458865 -40384991 + (ATG)n Simple_repeat Simple_repeat 1 85 0 7 1206 330 26 0 0 chr11 81458898 81458937 -40384919 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1206 605 231 0 17 chr11 81458946 81459065 -40384791 - ID_B1 SINE B4 -3 221 105 7 1206 429 269 99 8 chr11 81458949 81459080 -40384776 - B1F SINE Alu -6 143 1 7 1206 738 264 0 16 chr11 81459203 81459388 -40384468 - B3A SINE B2 -16 182 1 7 1206 22 35 0 0 chr11 81459908 81459937 -40383919 + AT_rich Low_complexity Low_complexity 1 29 0 7 1206 315 146 0 0 chr11 81459955 81460010 -40383846 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1206 471 78 0 0 chr11 81460009 81460073 -40383783 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1206 480 243 29 5 chr11 81460073 81460206 -40383650 - B3A SINE B2 -57 138 2 7 1206 196 392 9 29 chr11 81460724 81460829 -40383027 - L2c LINE L2 -226 3161 3059 7 1206 387 0 0 0 chr11 81461407 81461450 -40382406 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 1206 381 289 36 77 chr11 81462825 81463077 -40380779 + L1MA4 LINE L1 5743 6019 -281 7 1206 256 361 0 40 chr11 81463180 81463304 -40380552 - MLT1A0 LTR MaLR -23 351 233 7 1206 930 320 19 8 chr11 81463547 81463815 -40380041 - MLT1A0 LTR MaLR -94 271 1 7 1206 329 291 101 7 chr11 81465035 81465184 -40378672 + RSINE1 SINE B4 1 163 -2 7 1206 182 400 0 0 chr11 81465353 81465428 -40378428 - MIR SINE MIR -109 153 79 7 1206 720 253 6 39 chr11 81466239 81466428 -40377428 + B3A SINE B2 28 186 -9 7 1206 453 211 19 28 chr11 81466416 81466523 -40377333 - MER5A1 DNA MER1_type -42 124 19 7 1206 585 24 36 0 chr11 81467453 81467536 -40376320 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 7 1206 988 150 170 5 chr11 81468693 81468887 -40374969 + URR1A DNA MER1_type 1 226 0 7 1206 314 250 8 0 chr11 81469778 81469898 -40373958 + (TATATG)n Simple_repeat Simple_repeat 6 126 0 7 1206 196 197 122 40 chr11 81471028 81471102 -40372754 + L3 LINE CR1 2277 2356 -2133 7 1206 333 47 0 0 chr11 81472129 81472172 -40371684 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1206 1320 286 21 0 chr11 81472394 81472719 -40371137 - MER58B DNA MER1_type -3 338 7 7 1206 279 203 0 0 chr11 81472923 81472992 -40370864 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1206 348 382 26 20 chr11 81474474 81474669 -40369187 + MIR SINE MIR 32 227 -35 7 1206 2048 300 50 21 chr11 81475164 81475951 -40367905 - L1MC1 LINE L1 -81 6252 5441 7 1206 2384 168 52 5 chr11 81475951 81476353 -40367503 + MTC LTR MaLR 1 421 0 7 1206 2048 300 50 21 chr11 81476353 81476419 -40367437 - L1MC1 LINE L1 -893 5440 5374 7 1206 853 123 6 6 chr11 81476606 81476786 -40367070 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1206 771 280 23 0 chr11 81477056 81477270 -40366586 + ID_B1 SINE B4 2 220 -4 7 1206 260 278 65 32 chr11 81477379 81477472 -40366384 - MER117 DNA MER1_type -26 171 76 7 1206 731 187 0 3 chr11 81477892 81478027 -40365829 + B1_Mur1 SINE Alu 16 147 -2 7 1206 200 246 63 32 chr11 81478142 81478205 -40365651 + MER5B DNA MER1_type 114 178 0 7 1206 318 50 0 0 chr11 81479024 81479064 -40364792 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 7 1206 268 321 8 121 chr11 81479339 81479463 -40364393 - MIR SINE MIR -81 127 18 7 1206 230 0 33 0 chr11 81480500 81480530 -40363326 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1206 1188 43 0 0 chr11 81480530 81480668 -40363188 - B1_Mm SINE Alu -9 138 1 7 1206 233 57 0 28 chr11 81482101 81482137 -40361719 + (TGG)n Simple_repeat Simple_repeat 1 35 0 7 1206 190 234 0 41 chr11 81482736 81482785 -40361071 - MIRm SINE MIR -131 145 99 7 1206 261 289 105 38 chr11 81483743 81483876 -40359980 - MER5B DNA MER1_type 0 178 37 7 1206 231 347 118 33 chr11 81484588 81484740 -40359116 - MLT1G1 LTR MaLR -68 511 347 7 1206 271 255 303 20 chr11 81484800 81484952 -40358904 - MLT1G1 LTR MaLR -382 197 3 7 1206 200 343 148 6 chr11 81485056 81485232 -40358624 - MIR SINE MIR -56 206 6 7 1206 248 348 114 36 chr11 81485232 81485399 -40358457 + MER20 DNA MER1_type 35 214 -5 7 1206 819 229 115 0 chr11 81486112 81486295 -40357561 + MTD LTR MaLR 1 204 -215 7 1206 180 0 0 0 chr11 81486654 81486674 -40357182 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1206 719 225 104 23 chr11 81486674 81486839 -40357017 - B3A SINE B2 -17 181 3 7 1206 998 212 134 74 chr11 81486839 81487190 -40356666 + Charlie5 DNA MER1_type 2249 2620 -4 7 1206 338 340 61 43 chr11 81488180 81488343 -40355513 + MIRb SINE MIR 22 187 -81 7 1206 1117 80 9 0 chr11 81489009 81489223 -40354633 + (TAGA)n Simple_repeat Simple_repeat 1 216 0 8 1206 234 0 0 0 chr11 81489417 81489443 -40354413 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1206 206 393 124 0 chr11 81489452 81489597 -40354259 + MIR SINE MIR 12 174 -88 8 1206 26 0 0 0 chr11 81491827 81491853 -40352003 + AT_rich Low_complexity Low_complexity 1 26 0 8 1206 184 351 33 117 chr11 81492789 81493002 -40350854 - L3 LINE CR1 -37 4452 4258 8 1206 371 292 56 49 chr11 81493153 81493297 -40350559 - B3 SINE B2 -30 186 42 8 1206 288 111 0 0 chr11 81493902 81493947 -40349909 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1206 636 249 126 55 chr11 81494423 81494678 -40349178 + B4A SINE B4 2 274 -18 8 1206 931 187 143 0 chr11 81495284 81495466 -40348390 + URR1B DNA MER1_type 16 223 -2 8 1206 332 308 44 22 chr11 81495466 81495496 -40348360 - CYRA11_Mm Unknown Y-chromosome -443 174 142 8 1206 424 274 68 42 chr11 81495553 81495671 -40348185 + B1F2 SINE Alu 7 127 -22 8 1206 262 273 63 47 chr11 81495558 81495685 -40348171 - YREP_Mm Unknown Unknown -1505 307 179 8 1206 227 328 16 0 chr11 81495638 81495699 -40348157 + B1F SINE Alu 65 126 -23 8 1206 1089 295 39 7 chr11 81495770 81496053 -40347803 + B4 SINE B4 1 292 0 8 1206 200 155 67 33 chr11 81496248 81496290 -40347566 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 1206 1205 68 0 0 chr11 81496290 81496437 -40347419 - B1_Mus1 SINE Alu 0 148 2 8 1206 200 155 67 33 chr11 81496437 81496454 -40347402 + (TTTG)n Simple_repeat Simple_repeat 3 18 0 8 1206 230 312 52 78 chr11 81497124 81497277 -40346579 + RMER12 LTR ERVK 702 850 -472 8 1206 838 168 215 5 chr11 81497446 81497632 -40346224 + URR1B DNA MER1_type 1 225 0 8 1206 748 228 84 5 chr11 81497972 81498162 -40345694 - B3 SINE B2 -10 206 2 8 1206 2795 206 21 27 chr11 81499268 81499827 -40344029 - RLTR20B1 LTR ERVK 0 563 8 8 1206 21 36 0 0 chr11 81500082 81500110 -40343746 + AT_rich Low_complexity Low_complexity 1 28 0 1 1206 2179 236 48 19 chr11 81500254 81500836 -40343020 - Lx7 LINE L1 -346 7350 6752 2 1206 789 218 103 5 chr11 81501355 81501549 -40342307 + B3 SINE B2 2 214 -2 3 1206 21 0 0 0 chr11 81501637 81501658 -40342198 + AT_rich Low_complexity Low_complexity 1 21 0 4 1206 314 286 9 3 chr11 81501762 81501874 -40341982 - MIR SINE MIR -98 164 58 5 1206 396 0 0 0 chr11 81502926 81502970 -40340886 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1206 540 189 0 0 chr11 81503037 81503190 -40340666 + (CA)n Simple_repeat Simple_repeat 1 153 0 7 1206 190 0 0 62 chr11 81503385 81503417 -40340439 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 8 1206 235 302 94 53 chr11 81503820 81503991 -40339865 + MER5B DNA MER1_type 1 178 0 9 1206 448 245 93 26 chr11 81504003 81504154 -40339702 - MER5A1 DNA MER1_type -4 162 2 1 1206 1859 139 78 6 chr11 81504390 81504723 -40339133 + ORR1B2 LTR MaLR 3 359 -8 1 1206 1761 191 117 16 chr11 81505096 81505473 -40338383 + MTD LTR MaLR 5 419 0 1 1206 560 260 0 70 chr11 81506474 81506670 -40337186 - MTEa LTR MaLR -197 182 1 1 1206 605 236 31 31 chr11 81507314 81507476 -40336380 + RSINE1 SINE B4 2 163 -2 1 1206 192 370 47 16 chr11 81508297 81508426 -40335430 + L2a LINE L2 3277 3409 -17 1 1206 655 272 83 40 chr11 81509403 81509679 -40334177 + B4A SINE B4 1 288 -4 1 1206 289 206 0 45 chr11 81512437 81512503 -40331353 + MIRc SINE MIR 114 176 -92 1 1206 184 133 67 0 chr11 81513529 81513574 -40330282 + CT-rich Low_complexity Low_complexity 2 49 0 1 1206 254 279 23 23 chr11 81514071 81514159 -40329697 - MIRb SINE MIR -92 176 89 1 1206 292 291 108 54 chr11 81514474 81514659 -40329197 - MIRc SINE MIR -72 196 2 2 1206 775 268 47 96 chr11 81515441 81515784 -40328072 + Charlie22a DNA MER1_type 91 416 -75 2 1206 297 271 131 0 chr11 81516539 81516646 -40327210 - MER20 DNA MER1_type -92 127 7 2 1206 296 261 27 0 chr11 81519567 81519678 -40324178 + (ATGGTG)n Simple_repeat Simple_repeat 1 114 0 2 1206 281 297 49 10 chr11 81521171 81521273 -40322583 + ORR1E LTR MaLR 248 353 -6 2 1206 187 330 11 0 chr11 81522269 81522357 -40321499 + MIRb SINE MIR 120 208 -60 2 1206 608 335 101 28 chr11 81522747 81523134 -40320722 + MT2A LTR ERVL 10 424 -109 2 1206 336 48 0 0 chr11 81523135 81523177 -40320679 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1206 297 0 0 0 chr11 81523193 81523226 -40320630 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1206 269 179 18 0 chr11 81524000 81524056 -40319800 - RMER15 LTR ERVL -97 478 422 2 1206 372 247 39 141 chr11 81524778 81524990 -40318866 + B4A SINE B4 2 276 -16 3 1206 477 97 0 0 chr11 81525021 81525093 -40318763 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1206 222 37 0 0 chr11 81525093 81525120 -40318736 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1206 1196 204 5 0 chr11 81525312 81525523 -40318333 - B3 SINE B2 0 216 5 3 1207 307 231 0 0 chr11 81527557 81527622 -40316234 + B4 SINE B4 2 66 -226 3 1207 1402 259 20 32 chr11 81527673 81528095 -40315761 - MTE2b LTR MaLR -1 420 1 3 1207 441 309 10 68 chr11 81528197 81528492 -40315364 + MER113 DNA MER1_type 200 477 -44 3 1207 297 0 0 0 chr11 81528647 81528680 -40315176 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1207 315 0 0 0 chr11 81528680 81528714 -40315142 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1207 360 216 0 0 chr11 81528744 81528846 -40315010 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 1207 309 206 0 0 chr11 81528873 81528970 -40314886 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 1207 289 305 32 0 chr11 81528970 81529065 -40314791 - PB1D10 SINE Alu -3 114 17 4 1207 289 261 46 0 chr11 81529129 81529194 -40314662 + ID4_ SINE ID 7 74 -9 4 1207 408 299 94 56 chr11 81530276 81530619 -40313237 - L1ME3B LINE L1 -96 6066 5711 4 1207 315 289 0 13 chr11 81530762 81530839 -40313017 - RSINE1 SINE B4 -15 150 75 4 1207 226 341 65 65 chr11 81530912 81531050 -40312806 - B4A SINE B4 -153 139 2 4 1207 490 273 0 0 chr11 81531051 81531179 -40312677 - B1F SINE Alu -17 132 5 4 1207 824 293 27 37 chr11 81531234 81531528 -40312328 - B4 SINE B4 0 292 2 4 1207 223 341 74 27 chr11 81531733 81531903 -40311953 - MIRb SINE MIR -68 200 16 4 1207 21 36 0 0 chr11 81532397 81532425 -40311431 + AT_rich Low_complexity Low_complexity 1 28 0 4 1207 373 277 131 0 chr11 81532462 81532592 -40311264 - MER58A DNA MER1_type -34 190 44 4 1207 521 224 52 19 chr11 81532602 81532757 -40311099 + L1MB8 LINE L1 4926 5085 -1061 5 1207 965 303 27 6 chr11 81532975 81533310 -40310546 + L1MB8 LINE L1 5483 5824 -360 5 1207 768 215 14 0 chr11 81533428 81533572 -40310284 + B1_Mus2 SINE Alu 2 147 0 5 1207 313 171 81 0 chr11 81533572 81533765 -40310091 + (TA)n Simple_repeat Simple_repeat 1 208 0 5 1207 250 256 115 82 chr11 81533782 81533965 -40309891 + L1MB8 LINE L1 5919 6107 -71 5 1207 303 232 81 0 chr11 81534611 81534710 -40309146 + MIR SINE MIR 124 230 -32 5 1207 222 194 0 0 chr11 81536294 81536356 -40307500 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 5 1207 315 0 0 0 chr11 81536372 81536407 -40307449 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 5 1207 359 269 27 18 chr11 81537669 81537779 -40306077 + (TATG)n Simple_repeat Simple_repeat 2 112 0 5 1207 704 302 0 65 chr11 81537799 81538015 -40305841 - B4 SINE B4 -39 253 52 5 1207 319 286 91 6 chr11 81538164 81538329 -40305527 - MER53 DNA hAT -3 190 12 5 1207 214 293 95 24 chr11 81539583 81539709 -40304147 - MIRb SINE MIR -50 218 84 5 1207 288 77 0 0 chr11 81540266 81540305 -40303551 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 6 1207 297 0 0 0 chr11 81540547 81540580 -40303276 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1207 1082 155 122 20 chr11 81540642 81540846 -40303010 - URR1B DNA MER1_type 0 225 1 6 1207 201 317 37 37 chr11 81541040 81541148 -40302708 - MIR SINE MIR -122 140 33 6 1207 298 304 0 0 chr11 81541404 81541473 -40302383 + RMER30 DNA MER1_type 133 201 -1 6 1207 288 224 0 0 chr11 81542002 81542069 -40301787 + CT-rich Low_complexity Low_complexity 2 68 0 6 1207 632 124 9 0 chr11 81542062 81542167 -40301689 + (TTCTC)n Simple_repeat Simple_repeat 1 106 0 6 1207 756 175 95 0 chr11 81542167 81542304 -40301552 - B1_Mur4 SINE Alu 0 150 1 6 1207 241 24 23 47 chr11 81542726 81542769 -40301087 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1207 192 349 81 20 chr11 81543045 81543194 -40300662 - MIR SINE MIR -104 158 1 6 1207 229 329 0 41 chr11 81543208 81543313 -40300543 + L2c LINE L2 3102 3195 -180 7 1207 279 0 0 0 chr11 81543562 81543593 -40300263 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 7 1207 351 0 0 0 chr11 81544048 81544087 -40299769 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1207 8393 33 5 1 chr11 81544417 81545407 -40298449 + L1Md_F2 LINE L1 5588 6581 -1 7 1207 195 266 0 0 chr11 81546311 81546375 -40297481 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1207 324 0 0 0 chr11 81546892 81546928 -40296928 + (GA)n Simple_repeat Simple_repeat 2 37 0 7 1207 437 274 0 8 chr11 81547332 81547457 -40296399 - MIR3 SINE MIR 0 208 85 7 1207 274 289 166 25 chr11 81548235 81548398 -40295458 - MER3 DNA MER1_type -4 205 20 7 1207 234 0 0 0 chr11 81549561 81549587 -40294269 + (CCCCCA)n Simple_repeat Simple_repeat 6 31 0 7 1207 226 303 94 77 chr11 81550273 81550570 -40293286 - L2a LINE L2 -21 3405 3104 7 1207 1046 266 29 47 chr11 81550817 81551203 -40292653 + MTEb LTR MaLR 1 379 0 8 1207 283 328 13 1 chr11 81551969 81552063 -40291793 + B4 SINE B4 2 97 -68 8 1207 599 304 49 10 chr11 81552090 81552293 -40291563 + B4A SINE B4 69 279 -13 8 1207 194 342 13 0 chr11 81553246 81553322 -40290534 + MIRc SINE MIR 65 141 -127 8 1207 780 207 44 83 chr11 81554082 81554287 -40289569 - B3A SINE B2 0 198 2 8 1207 385 284 50 0 chr11 81554368 81554509 -40289347 + MIRb SINE MIR 104 251 -17 8 1207 1688 177 69 30 chr11 81556524 81556886 -40286970 + RMER1C Other Other 959 1334 -8 8 1207 456 283 53 24 chr11 81556895 81557065 -40286791 - L1MC4a LINE L1 -16 7866 7692 8 1207 466 252 50 0 chr11 81557069 81557193 -40286663 - PB1D10 SINE Alu 0 149 9 8 1207 293 350 77 0 chr11 81557206 81557400 -40286456 - L1MC4a LINE L1 -180 7702 7494 8 1207 226 306 41 14 chr11 81558206 81558279 -40285577 - MTEa LTR MaLR -210 149 75 8 1207 311 276 36 54 chr11 81558332 81558443 -40285413 - MTEa LTR MaLR -270 109 1 8 1207 970 271 111 37 chr11 81558518 81558871 -40284985 + MTEa LTR MaLR 1 379 0 8 1207 339 261 113 50 chr11 81561643 81561784 -40282072 - MER103 DNA DNA -13 153 4 9 1207 507 236 77 0 chr11 81562002 81562134 -40281722 + B1F SINE Alu 3 144 -5 9 1207 393 342 26 26 chr11 81562154 81562310 -40281546 + B4A SINE B4 7 162 -130 9 1207 227 244 0 0 chr11 81562986 81563031 -40280825 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1207 426 224 0 0 chr11 81563044 81563191 -40280665 + (CA)n Simple_repeat Simple_repeat 2 148 0 9 1207 444 336 65 82 chr11 81564099 81564455 -40279401 + ORR1E LTR MaLR 10 359 0 9 1207 228 222 37 12 chr11 81565588 81565670 -40278186 + GA-rich Low_complexity Low_complexity 4 87 0 9 1207 204 261 104 42 chr11 81565869 81565965 -40277891 - MIR3 SINE MIR -93 115 14 9 1207 412 354 59 27 chr11 81566999 81567220 -40276636 + MIR SINE MIR 35 262 0 9 1207 568 194 348 6 chr11 81567244 81567405 -40276451 + B3 SINE B2 1 216 0 9 1207 269 256 54 95 chr11 81567819 81567966 -40275890 + L2c LINE L2 3228 3368 -19 9 1207 1379 227 105 22 chr11 81568580 81568941 -40274915 - MTD LTR MaLR -28 391 1 1 1207 243 213 145 13 chr11 81569486 81569562 -40274294 + MIRb SINE MIR 183 268 0 1 1207 618 49 0 0 chr11 81569915 81569997 -40273859 + (TC)n Simple_repeat Simple_repeat 2 83 0 1 1207 238 200 20 0 chr11 81569997 81570047 -40273809 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1207 816 283 127 31 chr11 81570071 81570330 -40273526 - B4 SINE B4 -8 284 1 1 1207 221 356 36 36 chr11 81570544 81570681 -40273175 - MIRb SINE MIR -15 253 117 1 1207 313 272 66 58 chr11 81570685 81570806 -40273050 - LTR16E2 LTR ERVL -7 561 440 1 1207 698 263 63 86 chr11 81571143 81571505 -40272351 - ORR1E LTR MaLR -4 355 2 1 1207 3857 167 41 14 chr11 81571512 81572248 -40271608 + RMER6A LTR ERVK 1 756 0 1 1207 859 205 97 29 chr11 81574455 81574661 -40269195 + ID_B1 SINE B4 2 221 -3 1 1207 3292 47 120 0 chr11 81575268 81575692 -40268164 - MT2C_Mm LTR ERVL 0 475 1 1 1207 416 279 35 26 chr11 81575720 81575834 -40268022 - RSINE1 SINE B4 -43 122 8 1 1207 203 392 37 23 chr11 81576254 81576474 -40267382 + MIRc SINE MIR 37 264 -4 1 1207 474 101 0 0 chr11 81576510 81576579 -40267277 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1207 399 41 0 0 chr11 81577414 81577463 -40266393 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1 1207 401 53 0 18 chr11 81577472 81577529 -40266327 + (TCTCCC)n Simple_repeat Simple_repeat 5 60 0 1 1207 367 40 68 0 chr11 81577696 81577770 -40266086 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1207 728 253 201 56 chr11 81579139 81579307 -40264549 - MTEa LTR MaLR -18 361 165 1 1207 447 19 0 0 chr11 81579307 81579359 -40264497 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1 1207 549 44 0 0 chr11 81579359 81579426 -40264430 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1207 728 268 189 57 chr11 81579426 81579579 -40264277 - MTEa LTR MaLR -209 170 5 1 1207 471 218 56 31 chr11 81580056 81580162 -40263694 - RCHARR1 DNA MER1_type -30 944 838 1 1207 455 321 38 19 chr11 81580162 81580321 -40263535 + RSINE1 SINE B4 2 163 -2 1 1207 471 234 59 58 chr11 81580321 81580464 -40263392 - RCHARR1 DNA MER1_type -82 892 762 1 1207 921 292 91 20 chr11 81580563 81580860 -40262996 - RCHARR1 DNA MER1_type -600 374 57 1 1207 683 205 144 6 chr11 81581063 81581245 -40262611 - MTD LTR MaLR -14 405 182 1 1207 267 231 37 37 chr11 81582673 81582754 -40261102 - Charlie22a DNA MER1_type -8 483 403 1 1207 691 271 143 16 chr11 81582863 81583185 -40260671 + MLT1A0 LTR MaLR 3 365 0 1 1207 261 254 0 17 chr11 81583186 81583246 -40260610 - MIRc SINE MIR -110 158 100 1 1207 548 315 45 52 chr11 81583357 81583648 -40260208 - Charlie22a DNA MER1_type -124 367 79 1 1207 1455 95 9 5 chr11 81584024 81584236 -40259620 + L1_Mus3 LINE L1 6421 6633 -5 1 1207 756 22 0 0 chr11 81584247 81584265 -40259591 + (GAA)n Simple_repeat Simple_repeat 3 20 0 1 1207 1135 97 11 0 chr11 81584265 81584441 -40259415 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 1207 756 22 0 0 chr11 81584441 81584514 -40259342 + (GAA)n Simple_repeat Simple_repeat 3 75 0 1 1207 219 36 0 0 chr11 81584809 81584837 -40259019 + (TCCCC)n Simple_repeat Simple_repeat 2 29 0 1 1207 450 0 0 0 chr11 81585768 81585818 -40258038 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1207 473 306 76 12 chr11 81586748 81586920 -40256936 + MER33 DNA MER1_type 18 200 -124 1 1207 605 247 44 66 chr11 81586914 81586945 -40256911 - B3A SINE B2 0 198 167 1 1207 3207 70 2 0 chr11 81586945 81587344 -40256512 + MTB LTR MaLR 1 400 0 1 1207 462 18 0 0 chr11 81587345 81587400 -40256456 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1207 605 247 44 66 chr11 81587400 81587548 -40256308 - B3A SINE B2 -32 166 21 1 1207 507 359 0 27 chr11 81587605 81587754 -40256102 + RSINE1 SINE B4 21 165 0 1 1207 235 183 83 0 chr11 81587893 81587953 -40255903 - L1MA5 LINE L1 -7 6293 6229 1 1207 369 0 0 0 chr11 81588774 81588815 -40255041 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1207 608 71 20 0 chr11 81589317 81589415 -40254441 + (CAGAGA)n Simple_repeat Simple_repeat 4 103 0 1 1207 190 319 32 21 chr11 81589633 81589726 -40254130 + L2a LINE L2 2913 3006 -420 1 1207 182 191 21 0 chr11 81590938 81590985 -40252871 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1207 679 260 127 4 chr11 81590985 81591244 -40252612 - B4A SINE B4 0 292 2 1 1207 365 58 0 19 chr11 81591269 81591276 -40252580 + (GAA)n Simple_repeat Simple_repeat 2 8 0 1 1207 1161 118 0 0 chr11 81591276 81591454 -40252402 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 1207 365 58 0 19 chr11 81591454 81591499 -40252357 + (GAA)n Simple_repeat Simple_repeat 3 47 0 1 1207 227 31 31 0 chr11 81591495 81591527 -40252329 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 1 1207 618 82 0 0 chr11 81591527 81591612 -40252244 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 1 1207 480 284 49 7 chr11 81593019 81593161 -40250695 + B1F1 SINE Alu 1 148 -1 1 1207 189 273 90 11 chr11 81593293 81593382 -40250474 - MIRc SINE MIR -116 152 57 1 1207 281 278 92 20 chr11 81593435 81593553 -40250303 - MIR SINE MIR -128 148 24 1 1207 311 291 104 7 chr11 81594044 81594179 -40249677 - B1F SINE Alu -1 148 1 1 1207 513 0 0 0 chr11 81595110 81595167 -40248689 + (CAGG)n Simple_repeat Simple_repeat 4 60 0 1 1207 345 24 0 0 chr11 81597364 81597406 -40246450 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1207 216 178 0 43 chr11 81597416 81597463 -40246393 - B3 SINE B2 -86 130 86 1 1207 209 231 56 37 chr11 81598853 81598907 -40244949 - MIR3 SINE MIR -2 206 152 1 1207 1167 284 76 31 chr11 81599410 81599766 -40244090 - MTEa LTR MaLR -6 373 2 1 1207 719 304 12 24 chr11 81599844 81600009 -40243847 + RSINE1 SINE B4 3 165 0 1 1207 282 265 41 75 chr11 81600563 81600710 -40243146 + MIRb SINE MIR 97 242 -26 1 1207 301 254 83 76 chr11 81601561 81601693 -40242163 - RMER15 LTR ERVL -97 478 346 1 1207 414 100 0 0 chr11 81602057 81602117 -40241739 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1207 398 288 127 27 chr11 81602642 81602792 -40241064 + MIRb SINE MIR 37 201 -67 1 1207 295 356 56 64 chr11 81602786 81602965 -40240891 - MIRb SINE MIR 0 268 91 1 1207 808 294 61 42 chr11 81602965 81603324 -40240532 + ORR1D2 LTR MaLR 5 370 0 1 1207 295 356 56 64 chr11 81603324 81603378 -40240478 - MIRb SINE MIR -178 90 37 1 1207 220 311 0 0 chr11 81603734 81603795 -40240061 + GA-rich Low_complexity Low_complexity 1 61 0 1 1207 319 340 0 0 chr11 81603992 81604092 -40239764 + MIR SINE MIR 112 211 -51 1 1207 329 355 39 31 chr11 81604136 81604264 -40239592 + MLT1L LTR MaLR 434 562 -48 1 1207 3148 248 24 58 chr11 81604613 81605376 -40238480 + RMER1B Other Other 2 738 -328 1 1207 223 191 32 0 chr11 81605434 81605497 -40238359 + CT-rich Low_complexity Low_complexity 2 66 0 1 1207 552 258 162 50 chr11 81606391 81606669 -40237187 + ORR1E LTR MaLR 46 354 -5 1 1207 284 257 138 26 chr11 81607869 81607985 -40235871 + LTR50 LTR ERVL 105 233 -562 1 1207 233 295 281 14 chr11 81608072 81608282 -40235574 + LTR50 LTR ERVL 388 653 -142 1 1207 220 191 0 21 chr11 81608461 81608509 -40235347 + L2a LINE L2 3380 3426 0 1 1207 597 265 127 61 chr11 81609181 81609372 -40234484 - B4 SINE B4 0 292 87 1 1207 980 149 6 0 chr11 81609372 81609546 -40234310 + CT-rich Low_complexity Low_complexity 2 176 0 1 1207 597 265 127 61 chr11 81609546 81609567 -40234289 - B4 SINE B4 -206 86 66 1 1207 413 320 29 34 chr11 81609759 81609934 -40233922 + MLT1K LTR MaLR 1 174 -421 1 1207 207 0 0 0 chr11 81610968 81610991 -40232865 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1207 233 285 18 14 chr11 81611618 81611727 -40232129 - MIR SINE MIR -84 178 77 1 1207 717 285 169 0 chr11 81611880 81612122 -40231734 - B4A SINE B4 -8 284 2 1 1207 441 0 0 0 chr11 81612354 81612403 -40231453 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1207 253 226 0 0 chr11 81612559 81612612 -40231244 - MER117 DNA MER1_type -33 164 112 1 1207 488 301 24 0 chr11 81612804 81612927 -40230929 - RSINE1 SINE B4 -37 128 3 1 1207 348 364 69 11 chr11 81613696 81613871 -40229985 + MIRb SINE MIR 20 204 -64 1 1207 242 223 15 0 chr11 81614100 81614163 -40229693 - MIRc SINE MIR -125 151 85 1 1207 291 250 0 0 chr11 81615081 81615141 -40228715 - ID4 SINE ID -19 64 5 1 1207 242 266 248 0 chr11 81615159 81615272 -40228584 - B1F2 SINE Alu -8 141 1 1 1207 279 0 0 0 chr11 81615778 81615809 -40228047 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1207 366 23 0 0 chr11 81615843 81615886 -40227970 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1207 997 267 67 8 chr11 81615908 81616161 -40227695 - B4 SINE B4 -22 270 3 1 1207 215 330 47 52 chr11 81616544 81616675 -40227181 - MER5A DNA MER1_type -43 146 4 1 1207 312 340 0 0 chr11 81617559 81617656 -40226200 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 1207 1304 235 106 38 chr11 81619043 81619384 -40224472 + MTEa LTR MaLR 5 368 -11 1 1207 452 303 129 55 chr11 81620264 81620575 -40223281 - RMER15 LTR ERVL 0 575 242 1 1207 618 29 57 0 chr11 81621538 81621643 -40222213 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 1207 240 303 164 42 chr11 81622045 81622331 -40221525 + L2a LINE L2 3106 3426 0 1 1207 241 358 0 10 chr11 81622693 81622789 -40221067 - Tigger16b DNA Tigger -49 288 194 1 1207 793 301 34 52 chr11 81624484 81624775 -40219081 - RMER15 LTR ERVL -15 560 275 1 1207 181 172 0 0 chr11 81625149 81625178 -40218678 + L3b LINE CR1 428 456 -26 1 1207 1293 310 45 11 chr11 81626001 81626695 -40217161 + L1MA4A LINE L1 5206 5930 -373 1 1207 1140 204 42 5 chr11 81626769 81626981 -40216875 - URR1B DNA MER1_type 0 225 6 1 1207 405 0 0 0 chr11 81627818 81627863 -40215993 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1207 202 359 147 18 chr11 81629380 81629550 -40214306 - MIRc SINE MIR -64 204 13 2 1207 230 355 0 0 chr11 81629607 81629669 -40214187 + MIRb SINE MIR 45 106 -162 2 1207 440 300 78 56 chr11 81629723 81629942 -40213914 - MIRb SINE MIR -18 244 39 2 1207 282 337 12 12 chr11 81630684 81630768 -40213088 + MIRb SINE MIR 46 129 -139 2 1207 453 19 0 0 chr11 81630768 81630822 -40213034 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1207 432 97 0 0 chr11 81630861 81630923 -40212933 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1207 282 196 52 26 chr11 81630937 81631052 -40212804 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 2 1207 242 324 66 38 chr11 81631818 81631924 -40211932 + MER20 DNA MER1_type 57 165 -54 2 1207 378 94 0 0 chr11 81632044 81632108 -40211748 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1207 298 258 21 31 chr11 81632243 81632339 -40211517 + CT-rich Low_complexity Low_complexity 2 96 0 2 1207 189 231 0 0 chr11 81632951 81632990 -40210866 - L2c LINE L2 -248 3139 3101 2 1207 429 310 68 82 chr11 81633051 81633332 -40210524 + L2a LINE L2 3134 3410 -16 2 1207 27 29 0 0 chr11 81634600 81634634 -40209222 + AT_rich Low_complexity Low_complexity 1 34 0 2 1207 669 238 125 0 chr11 81634653 81634813 -40209043 - B3A SINE B2 -18 180 1 2 1207 193 289 36 117 chr11 81635164 81635301 -40208555 - L2c LINE L2 -211 3176 3051 2 1207 188 270 0 0 chr11 81635417 81635454 -40208402 - MIR SINE MIR -3 259 223 2 1207 796 302 77 18 chr11 81636385 81636658 -40207198 + RMER15 LTR ERVL 273 561 -14 2 1207 272 279 83 31 chr11 81637124 81637220 -40206636 + MTEb LTR MaLR 274 374 -5 2 1207 289 294 0 0 chr11 81637257 81637325 -40206531 + ORR1C2 LTR MaLR 2 69 -315 2 1207 197 307 26 91 chr11 81638131 81638285 -40205571 - MIR3 SINE MIR -14 194 51 2 1207 265 311 111 17 chr11 81638884 81639064 -40204792 + Charlie19a DNA Charlie 33 229 -157 2 1207 277 378 80 15 chr11 81639272 81639409 -40204447 + MER63B DNA AcHobo 280 425 -11 2 1207 1173 202 242 6 chr11 81639529 81639868 -40203988 - MTD LTR MaLR 0 419 1 2 1207 4156 173 45 4 chr11 81639928 81640037 -40203819 - RMER1A Other Other -5 1025 899 2 1207 477 50 0 0 chr11 81640037 81640097 -40203759 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1207 4156 208 42 16 chr11 81640097 81641061 -40202795 - RMER1A Other Other -132 898 44 2 1207 663 324 104 54 chr11 81641193 81641634 -40202222 + MLT2B3 LTR ERVL 7 469 -85 2 1207 237 295 76 13 chr11 81641850 81641929 -40201927 + MIRb SINE MIR 43 126 -142 2 1207 386 120 0 24 chr11 81643561 81643646 -40200210 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 2 1207 1058 281 92 27 chr11 81643665 81644144 -40199712 - L1MA9 LINE L1 0 7272 6763 2 1207 231 286 12 12 chr11 81644244 81644329 -40199527 - L1MA9 LINE L1 -435 6714 6630 2 1207 420 20 0 0 chr11 81644338 81644387 -40199469 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1207 268 245 0 0 chr11 81644390 81644439 -40199417 - B3A SINE B2 -47 151 103 2 1207 1194 282 69 66 chr11 81644440 81645178 -40198678 - L1MA9 LINE L1 -1543 5560 4821 2 1207 486 256 94 47 chr11 81645194 81645299 -40198557 - L1MA9 LINE L1 -2695 4405 4288 2 1207 1789 173 39 25 chr11 81645299 81645661 -40198195 + ORR1B2 LTR MaLR 1 367 0 2 1207 7523 153 74 15 chr11 81645661 81647086 -40196770 + ORR1B2-int LTR MaLR 1 1509 0 2 1207 2090 126 71 23 chr11 81647086 81647436 -40196420 + ORR1B2 LTR MaLR 1 367 0 2 1207 486 256 94 47 chr11 81647436 81647541 -40196315 - L1MA9 LINE L1 -2813 4287 4185 2 1207 759 279 31 86 chr11 81647639 81647894 -40195962 + B4 SINE B4 46 286 -6 2 1207 1526 278 111 46 chr11 81647975 81648721 -40195135 - L1MA9 LINE L1 -2966 4134 3305 2 1207 734 207 60 60 chr11 81648721 81648937 -40194919 + B3 SINE B2 1 216 0 2 1207 1526 278 111 46 chr11 81648937 81649172 -40194684 - L1MA9 LINE L1 -3796 3304 3090 2 1207 354 302 0 78 chr11 81649191 81649320 -40194536 - PB1D9 SINE Alu -1 119 1 2 1207 1007 329 14 0 chr11 81649487 81649773 -40194083 + B4 SINE B4 2 291 -1 2 1207 324 0 0 0 chr11 81649780 81649816 -40194040 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1207 414 0 0 0 chr11 81649816 81649861 -40193995 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1207 518 322 37 22 chr11 81650107 81650383 -40193473 - L1MA9 LINE L1 -4223 2884 2645 2 1207 714 301 75 60 chr11 81650395 81650519 -40193337 - ORR1E LTR MaLR -2 357 229 2 1207 837 99 0 0 chr11 81650519 81650640 -40193216 + (TTCC)n Simple_repeat Simple_repeat 3 123 0 2 1207 714 301 75 60 chr11 81650640 81650862 -40192994 - ORR1E LTR MaLR -131 228 6 2 1207 230 268 22 44 chr11 81650867 81650957 -40192899 - L1MA9 LINE L1 -4876 2232 2145 2 1207 313 262 18 55 chr11 81651169 81651278 -40192578 - ID_B1 SINE B4 -3 221 117 2 1207 3470 29 10 2 chr11 81651332 81651742 -40192114 + L1Md_F3 LINE L1 6168 6580 -4 2 1207 336 276 47 121 chr11 81652080 81652377 -40191479 - L1MA9 LINE L1 -5026 2004 1730 2 1207 654 319 62 28 chr11 81652362 81652685 -40191171 - L1MA9 LINE L1 -6667 363 30 2 1207 799 278 53 119 chr11 81652905 81653759 -40190097 + L1MA4 LINE L1 5090 5914 -383 2 1207 785 296 141 23 chr11 81653769 81654367 -40189489 + LTR50 LTR ERVL 50 795 0 2 1207 513 332 24 34 chr11 81654742 81654948 -40188908 + MIRb SINE MIR 51 254 -14 2 1207 223 353 123 36 chr11 81655964 81656102 -40187754 + MIRb SINE MIR 4 153 -115 2 1207 207 0 0 0 chr11 81656738 81656761 -40187095 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1207 824 349 7 14 chr11 81656787 81657063 -40186793 + MTEa-int LTR MaLR 1085 1358 -222 2 1207 233 49 73 0 chr11 81657072 81657113 -40186743 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1207 897 257 25 18 chr11 81657113 81657370 -40186486 + MTEa-int LTR MaLR 1291 1569 -11 2 1207 724 294 106 56 chr11 81657385 81657742 -40186114 + MTEa LTR MaLR 5 379 0 2 1208 293 294 82 91 chr11 81658066 81658298 -40185558 - L2b LINE L2 -235 3152 2923 2 1208 181 359 20 80 chr11 81658374 81658474 -40185382 - L2c LINE L2 -194 3193 3100 2 1208 198 0 0 0 chr11 81659156 81659178 -40184678 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1208 951 238 0 24 chr11 81659220 81659427 -40184429 + B3 SINE B2 5 206 -10 2 1208 216 271 0 0 chr11 81660790 81660838 -40183018 - MIRb SINE MIR -103 165 118 2 1208 540 312 86 16 chr11 81660887 81661190 -40182666 + MER33 DNA MER1_type 1 324 0 2 1208 495 0 0 0 chr11 81662020 81662075 -40181781 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1208 829 274 87 4 chr11 81662095 81662359 -40181497 - B4 SINE B4 -5 287 2 2 1208 402 69 0 0 chr11 81662554 81662612 -40181244 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1208 555 309 0 41 chr11 81663384 81663504 -40180352 - RSINE1 SINE B4 -24 141 27 2 1208 3181 37 42 0 chr11 81663504 81663884 -40179972 + MTA_Mm LTR MaLR 1 396 0 2 1208 555 309 0 41 chr11 81663884 81663908 -40179948 - RSINE1 SINE B4 -139 26 3 2 1208 205 267 0 0 chr11 81664038 81664083 -40179773 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 2 1208 518 322 23 42 chr11 81664893 81665107 -40178749 - MIR SINE MIR -25 237 28 2 1208 190 284 30 0 chr11 81666138 81666205 -40177651 + MIRc SINE MIR 78 146 -122 2 1208 1433 253 64 3 chr11 81666297 81666654 -40177202 + MTE2b LTR MaLR 1 379 0 2 1208 787 294 21 66 chr11 81666964 81667252 -40176604 - B4 SINE B4 -16 276 2 2 1208 252 326 12 0 chr11 81668196 81668282 -40175574 + CT-rich Low_complexity Low_complexity 5 91 0 2 1208 2155 172 74 8 chr11 81668305 81668698 -40175158 - MTC LTR MaLR 0 421 3 2 1208 333 352 8 0 chr11 81668709 81668837 -40175019 + CT-rich Low_complexity Low_complexity 4 132 0 2 1208 297 89 0 0 chr11 81669469 81669514 -40174342 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1208 348 289 21 0 chr11 81669840 81669937 -40173919 + MIR SINE MIR 46 144 -118 2 1208 2007 153 14 14 chr11 81670096 81670454 -40173402 - RLTR15 LTR ERVK -1 358 1 2 1208 430 349 118 25 chr11 81670889 81671168 -40172688 + MLT1E2 LTR MaLR 250 554 -73 2 1208 344 324 66 7 chr11 81671824 81671961 -40171895 - MER5B DNA MER1_type -32 146 2 2 1208 414 88 0 0 chr11 81672228 81672296 -40171560 + (A)n Simple_repeat Simple_repeat 1 68 0 2 1208 1057 260 60 16 chr11 81672604 81672968 -40170888 - MTD LTR MaLR -21 398 19 2 1208 212 167 21 0 chr11 81673134 81673182 -40170674 + CT-rich Low_complexity Low_complexity 4 52 0 2 1208 597 308 20 70 chr11 81673309 81673609 -40170247 + MLT1A1 LTR MaLR 124 408 0 2 1208 441 0 0 0 chr11 81674917 81674966 -40168890 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1208 519 289 69 117 chr11 81674997 81675244 -40168612 - B4A SINE B4 -44 248 14 2 1208 237 347 42 8 chr11 81675631 81675750 -40168106 + MIRb SINE MIR 46 168 -100 2 1208 764 270 44 117 chr11 81675753 81676051 -40167805 + B4A SINE B4 3 278 -14 2 1208 228 111 0 0 chr11 81676063 81676099 -40167757 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1208 415 276 49 77 chr11 81677768 81678015 -40165841 + B4A SINE B4 1 240 -52 2 1208 1163 56 14 0 chr11 81678462 81678606 -40165250 - B1_Mus2 SINE Alu 0 147 2 2 1208 222 37 0 0 chr11 81678658 81678685 -40165171 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1208 183 313 12 35 chr11 81678851 81678937 -40164919 - MIRb SINE MIR -63 205 122 2 1208 214 309 62 0 chr11 81679943 81680024 -40163832 - B4A SINE B4 -205 87 2 2 1208 577 221 7 4 chr11 81680160 81680437 -40163419 + (TG)n Simple_repeat Simple_repeat 1 278 0 2 1208 559 224 0 11 chr11 81680451 81680632 -40163224 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1208 550 214 3 9 chr11 81680664 81680992 -40162864 + (TG)n Simple_repeat Simple_repeat 1 325 0 2 1208 792 261 69 5 chr11 81681104 81681308 -40162548 - B4A SINE B4 -62 230 14 2 1208 387 113 0 0 chr11 81681327 81681398 -40162458 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1208 386 294 29 29 chr11 81681404 81681544 -40162312 - ID_B1 SINE B4 -1 223 84 2 1208 301 347 56 34 chr11 81681727 81681960 -40161896 + MLT1A LTR MaLR 136 373 -1 2 1208 203 286 32 0 chr11 81682454 81682517 -40161339 - MIR SINE MIR -116 146 82 2 1208 696 308 89 8 chr11 81683359 81683828 -40160028 + L1ME2 LINE L1 5383 5907 -257 2 1208 297 281 128 14 chr11 81684137 81684278 -40159578 + L1ME3B LINE L1 5713 5869 -371 2 1208 22 0 0 0 chr11 81684329 81684351 -40159505 + AT_rich Low_complexity Low_complexity 1 22 0 2 1208 387 0 0 0 chr11 81685390 81685433 -40158423 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1208 626 217 69 31 chr11 81686871 81687145 -40156711 + MTEa LTR MaLR 2 379 0 2 1208 280 358 37 64 chr11 81687175 81687363 -40156493 + MLT1H2 LTR MaLR 38 220 -335 2 1208 298 279 53 26 chr11 81687507 81687621 -40156235 + MLT1H2 LTR MaLR 373 489 0 2 1208 195 100 0 0 chr11 81687727 81687757 -40156099 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1208 221 351 68 29 chr11 81688246 81688476 -40155380 - MIR SINE MIR -9 259 15 2 1208 354 363 35 0 chr11 81689279 81689450 -40154406 + MLT1H LTR MaLR 49 225 -324 3 1208 255 79 0 0 chr11 81689974 81690012 -40153844 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1208 270 239 0 0 chr11 81690114 81690185 -40153671 + CT-rich Low_complexity Low_complexity 3 73 0 3 1208 1135 102 0 11 chr11 81690194 81690373 -40153483 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 3 1208 659 276 87 0 chr11 81690374 81690570 -40153286 - ID_B1 SINE B4 -11 213 1 3 1208 218 348 81 7 chr11 81690764 81690900 -40152956 + MIRc SINE MIR 35 180 -88 3 1208 201 404 9 0 chr11 81691554 81691668 -40152188 + L2b LINE L2 3034 3148 -227 3 1208 423 0 0 0 chr11 81692378 81692425 -40151431 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1208 1025 298 70 26 chr11 81692457 81692926 -40150930 - Lx9 LINE L1 -176 7468 6979 3 1208 603 289 89 16 chr11 81694047 81694293 -40149563 - RMER15 LTR ERVL 0 575 312 3 1208 343 237 40 61 chr11 81694333 81694481 -40149375 - RMER15 LTR ERVL -427 148 4 3 1208 1004 200 88 11 chr11 81694557 81694830 -40149026 + RLTR15 LTR ERVK 1 294 -65 3 1208 3303 40 2 8 chr11 81695712 81696110 -40147746 + MTA_Mm LTR MaLR 1 396 0 3 1208 187 392 40 40 chr11 81696923 81697170 -40146686 - MIR SINE MIR -1 261 15 3 1208 229 242 150 90 chr11 81698660 81698860 -40144996 - L1ME2 LINE L1 -263 6181 5970 3 1208 1196 308 16 54 chr11 81698938 81699361 -40144495 + MTD LTR MaLR 1 407 -12 3 1208 639 249 69 31 chr11 81699363 81699624 -40144232 - L1ME2 LINE L1 -267 5897 5627 3 1208 423 279 0 35 chr11 81699887 81700002 -40143854 + PB1D10 SINE Alu 1 111 -6 3 1208 1672 197 109 13 chr11 81700170 81700545 -40143311 + MTD LTR MaLR 9 419 0 3 1208 198 0 0 0 chr11 81702088 81702110 -40141746 + (CAAAG)n Simple_repeat Simple_repeat 2 23 0 3 1208 373 225 55 56 chr11 81702310 81702517 -40141339 + L1ME4a LINE L1 5680 5886 -238 3 1208 272 308 101 19 chr11 81703209 81703368 -40140488 + MIR3 SINE MIR 21 192 -16 3 1208 731 219 93 39 chr11 81705226 81705430 -40138426 + B3 SINE B2 2 216 0 3 1208 194 0 39 0 chr11 81705520 81705546 -40138310 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 1208 307 303 0 0 chr11 81705556 81705632 -40138224 - ID4 SINE ID -2 81 6 3 1208 338 303 99 42 chr11 81705676 81706031 -40137825 - L1ME4a LINE L1 -20 6104 5730 3 1208 506 303 37 26 chr11 81706304 81706494 -40137362 - MER58A DNA MER1_type -32 192 1 3 1208 189 322 0 0 chr11 81708049 81708108 -40135748 - L2a LINE L2 0 3426 3368 3 1208 247 297 44 0 chr11 81708494 81708585 -40135271 + MIRc SINE MIR 41 135 -133 3 1208 2231 56 2 4 chr11 81708597 81708904 -40134952 - L1Md_F3 LINE L1 -748 5819 5515 3 1208 6713 39 6 1 chr11 81708905 81709710 -40134146 + L1Md_F3 LINE L1 5762 6570 -14 3 1208 214 337 82 0 chr11 81711857 81711955 -40131901 + L2b LINE L2 3230 3335 -40 3 1208 605 153 36 0 chr11 81714772 81714909 -40128947 + GA-rich Low_complexity Low_complexity 3 144 0 3 1208 296 268 97 8 chr11 81715246 81715370 -40128486 + MIRb SINE MIR 67 201 -67 3 1208 243 0 0 0 chr11 81715439 81715466 -40128390 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1208 3329 171 80 5 chr11 81715472 81716085 -40127771 + Lx5 LINE L1 6388 7046 -4 3 1208 213 39 0 0 chr11 81716651 81716677 -40127179 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 1208 429 70 0 0 chr11 81716677 81716733 -40127123 + (CGTG)n Simple_repeat Simple_repeat 1 57 0 3 1208 354 98 0 0 chr11 81717398 81717449 -40126407 + (TAAG)n Simple_repeat Simple_repeat 1 51 0 3 1208 451 238 71 146 chr11 81718485 81718966 -40124890 - Lx8 LINE L1 -28 7445 7001 3 1208 1125 222 38 116 chr11 81718976 81719373 -40124483 + MTE2a LTR MaLR 14 379 0 3 1208 188 265 20 0 chr11 81719483 81719532 -40124324 - MIR SINE MIR -97 111 62 3 1208 204 111 0 0 chr11 81720756 81720792 -40123064 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 3 1208 329 299 49 88 chr11 81721699 81722007 -40121849 - L1ME3B LINE L1 -253 5987 5692 3 1208 826 78 0 15 chr11 81724010 81724140 -40119716 + (TA)n Simple_repeat Simple_repeat 2 129 0 3 1208 223 350 56 16 chr11 81724996 81725121 -40118735 - L2b LINE L2 -193 3182 3053 3 1208 225 83 0 0 chr11 81725181 81725217 -40118639 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1208 474 226 26 9 chr11 81725512 81725628 -40118228 + PB1D7 SINE Alu 3 120 0 3 1208 449 265 36 62 chr11 81726489 81726682 -40117174 + MLT1C LTR MaLR 254 441 -26 3 1208 2221 192 74 63 chr11 81727555 81727589 -40116267 - RMER15 LTR ERVL 0 575 542 3 1208 762 102 0 0 chr11 81727589 81727707 -40116149 + (CA)n Simple_repeat Simple_repeat 2 119 0 3 1208 2221 192 74 63 chr11 81727707 81728239 -40115617 - RMER15 LTR ERVL -34 541 5 3 1208 273 197 0 0 chr11 81728570 81728631 -40115225 + CT-rich Low_complexity Low_complexity 1 61 0 3 1208 286 167 91 0 chr11 81728735 81728801 -40115055 - L1MC3 LINE L1 -176 7609 7538 3 1208 252 283 42 50 chr11 81729750 81729869 -40113987 + MIR SINE MIR 77 194 -68 3 1208 718 263 8 3 chr11 81730821 81730999 -40112857 - B3A SINE B2 -38 178 1 3 1208 283 283 115 45 chr11 81731059 81731303 -40112553 - L1MD LINE L1 -548 5811 5551 3 1208 373 327 76 59 chr11 81731381 81731972 -40111884 - L1M5 LINE L1 -844 5302 4702 3 1208 476 105 13 0 chr11 81731974 81732050 -40111806 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 3 1208 351 0 0 0 chr11 81732087 81732126 -40111730 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1208 420 224 131 0 chr11 81732184 81732291 -40111565 - RSINE1 SINE B4 -41 124 4 3 1208 456 287 58 93 chr11 81732291 81732795 -40111061 - L1M5 LINE L1 -1433 4713 4228 3 1208 248 290 93 0 chr11 81733405 81733512 -40110344 + Lx8 LINE L1 7355 7471 -2 3 1208 846 149 7 20 chr11 81733631 81733782 -40110074 - B1_Mur4 SINE Alu -1 149 1 3 1208 224 30 0 29 chr11 81733809 81733843 -40110013 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1208 315 305 79 75 chr11 81734085 81734312 -40109544 - L1MC LINE L1 -2910 3236 3009 3 1208 298 286 85 58 chr11 81734907 81735130 -40108726 - L1MC4a LINE L1 -702 7340 7112 3 1208 302 176 63 32 chr11 81735151 81735309 -40108547 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 3 1208 660 332 38 38 chr11 81735354 81735720 -40108136 - L1MC4a LINE L1 -839 7043 6678 3 1208 225 94 0 0 chr11 81735767 81735799 -40108057 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1208 305 217 116 32 chr11 81736005 81736100 -40107756 - PB1D10 SINE Alu 0 117 15 3 1208 610 176 52 30 chr11 81736410 81736545 -40107311 - B1_Mus1 SINE Alu 0 148 11 3 1208 221 309 0 14 chr11 81736494 81736563 -40107293 - B4A SINE B4 -147 145 78 3 1208 433 297 50 53 chr11 81737307 81737571 -40106285 - L1M4 LINE L1 -3488 2658 2392 3 1208 1136 134 16 5 chr11 81737571 81737758 -40106098 + B2_Mm2 SINE B2 3 191 -4 3 1208 433 297 50 53 chr11 81737758 81737813 -40106043 - L1M4 LINE L1 -3755 2391 2340 3 1208 259 278 42 0 chr11 81737909 81737981 -40105875 - B4A SINE B4 -4 288 214 3 1208 388 345 55 37 chr11 81738229 81738446 -40105410 - Lx8 LINE L1 -307 7166 6946 3 1208 392 292 28 9 chr11 81738448 81738555 -40105301 - B4A SINE B4 -69 223 115 3 1208 369 0 0 0 chr11 81738556 81738597 -40105259 + (CATA)n Simple_repeat Simple_repeat 2 42 0 3 1208 324 283 130 73 chr11 81738760 81739197 -40104659 - L1ME3B LINE L1 -216 5957 5484 3 1208 234 0 0 0 chr11 81739904 81739930 -40103926 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1208 776 261 3 24 chr11 81741488 81741689 -40102167 + B3 SINE B2 8 206 -10 3 1208 23 0 0 0 chr11 81741772 81741795 -40102061 + AT_rich Low_complexity Low_complexity 1 23 0 3 1208 218 338 26 0 chr11 81744058 81744135 -40099721 - L3 LINE CR1 -95 4394 4316 3 1208 453 275 122 53 chr11 81744458 81744662 -40099194 + MTEa LTR MaLR 1 208 -171 3 1208 574 49 24 0 chr11 81744662 81744744 -40099112 + (TC)n Simple_repeat Simple_repeat 2 85 0 3 1208 453 275 122 53 chr11 81744744 81744785 -40099071 + MTEa LTR MaLR 209 262 -117 3 1208 5943 49 6 0 chr11 81745155 81745870 -40097986 + L1_Mus1 LINE L1 5849 6567 0 3 1208 249 83 0 0 chr11 81746205 81746241 -40097615 + (TTG)n Simple_repeat Simple_repeat 1 36 0 3 1208 868 156 0 14 chr11 81746288 81746431 -40097425 - B1_Mur3 SINE Alu 0 149 9 3 1208 1056 39 0 0 chr11 81746696 81746825 -40097031 + (TTC)n Simple_repeat Simple_repeat 3 131 0 3 1208 526 344 98 31 chr11 81747006 81747426 -40096430 + MLT1C LTR MaLR 15 462 -5 3 1208 221 285 159 37 chr11 81748163 81748350 -40095506 - MIR SINE MIR -27 241 26 3 1208 228 141 62 0 chr11 81748462 81748526 -40095330 + GA-rich Low_complexity Low_complexity 1 68 0 3 1208 187 231 0 0 chr11 81749823 81749862 -40093994 + L2a LINE L2 3363 3401 -25 3 1208 560 332 95 22 chr11 81750201 81750475 -40093381 - MLT1A LTR MaLR -14 360 67 3 1208 203 200 33 16 chr11 81751020 81751081 -40092775 + L2c LINE L2 3136 3197 -190 3 1208 270 250 65 0 chr11 81752006 81752098 -40091758 - MER5A1 DNA MER1_type -5 161 64 3 1208 1750 131 57 7 chr11 81752782 81753083 -40090773 + ORR1A3 LTR MaLR 1 316 -10 3 1208 423 0 0 0 chr11 81753083 81753130 -40090726 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1208 346 259 80 47 chr11 81753782 81753932 -40089924 - RSINE1 SINE B4 0 165 11 3 1208 681 342 30 4 chr11 81754014 81754281 -40089575 - B4A SINE B4 -18 274 1 3 1208 441 139 0 0 chr11 81754339 81754418 -40089438 + L1_Mus3 LINE L1 6560 6638 0 3 1208 308 298 9 37 chr11 81754799 81754907 -40088949 + MIRc SINE MIR 74 178 -90 3 1208 590 0 14 0 chr11 81755658 81755728 -40088128 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1208 1809 198 43 20 chr11 81756360 81756757 -40087099 - MTD LTR MaLR -13 406 1 3 1208 503 253 118 41 chr11 81756904 81757049 -40086807 + B3A SINE B2 1 163 -35 3 1208 525 16 0 0 chr11 81757049 81757111 -40086745 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1208 503 253 118 41 chr11 81757111 81757134 -40086722 + B3A SINE B2 164 182 -16 3 1208 430 315 123 0 chr11 81758161 81758323 -40085533 + MER20 DNA MER1_type 6 187 -32 4 1208 203 186 23 0 chr11 81758789 81758832 -40085024 + GA-rich Low_complexity Low_complexity 3 46 0 4 1208 1312 245 102 7 chr11 81759730 81760141 -40083715 - L1MA5 LINE L1 -19 6281 5764 4 1208 815 61 9 0 chr11 81760240 81760354 -40083502 + (TC)n Simple_repeat Simple_repeat 2 116 0 4 1208 231 214 0 0 chr11 81760383 81760425 -40083431 + MER5B DNA MER1_type 127 168 -10 4 1208 23 54 0 0 chr11 81760588 81760625 -40083231 + AT_rich Low_complexity Low_complexity 1 37 0 4 1208 719 228 0 0 chr11 81760952 81761088 -40082768 + B3A SINE B2 16 151 -47 4 1208 360 0 0 0 chr11 81761090 81761130 -40082726 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1208 1072 303 29 14 chr11 81761833 81762184 -40081672 - MLT1A0 LTR MaLR -3 362 7 4 1208 475 245 0 47 chr11 81762739 81762846 -40081010 + RSINE1 SINE B4 44 145 -20 4 1208 357 24 0 0 chr11 81762846 81762888 -40080968 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1208 22 35 0 0 chr11 81762888 81762917 -40080939 + AT_rich Low_complexity Low_complexity 1 29 0 4 1208 204 78 78 0 chr11 81762923 81762974 -40080882 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1208 1127 88 0 13 chr11 81762981 81763131 -40080725 - B1_Mus1 SINE Alu 0 148 1 4 1208 486 0 0 0 chr11 81763357 81763411 -40080445 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1208 293 302 111 0 chr11 81763538 81763700 -40080156 + L1MC5 LINE L1 7010 7189 -772 4 1208 455 344 39 58 chr11 81764092 81764435 -40079421 + L1MB8 LINE L1 5706 6047 -127 4 1208 500 0 17 0 chr11 81764590 81764650 -40079206 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1208 591 332 94 16 chr11 81765079 81765578 -40078278 + L1MC4 LINE L1 6706 7243 -799 4 1208 513 75 0 0 chr11 81765807 81765940 -40077916 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 4 1208 215 358 0 22 chr11 81766369 81766506 -40077350 + L2c LINE L2 3254 3387 0 4 1208 724 237 77 33 chr11 81767097 81767420 -40076436 + MTEb LTR MaLR 23 371 -8 4 1208 2579 238 85 61 chr11 81768872 81768959 -40074897 - RCHARR1 DNA MER1_type -64 910 832 4 1208 808 242 81 0 chr11 81768959 81769157 -40074699 + B3 SINE B2 3 216 0 4 1208 2579 238 85 61 chr11 81769157 81769956 -40073900 - RCHARR1 DNA MER1_type -143 831 3 4 1208 491 216 352 0 chr11 81770601 81770763 -40073093 + ID_B1 SINE B4 2 220 -4 4 1208 183 284 88 33 chr11 81770809 81770900 -40072956 - MIRc SINE MIR -57 211 116 4 1208 495 0 0 0 chr11 81772262 81772317 -40071539 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1208 336 277 135 90 chr11 81772547 81772813 -40071043 - LTR16A1 LTR ERVL -33 423 146 4 1208 289 254 0 0 chr11 81773255 81773318 -40070538 - MIR3 SINE MIR -37 171 109 4 1208 504 0 0 0 chr11 81774092 81774148 -40069708 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1208 868 309 22 22 chr11 81774197 81774472 -40069384 - B4A SINE B4 -4 288 14 4 1208 356 234 0 0 chr11 81775499 81775576 -40068280 - ID_B1 SINE B4 -20 204 128 4 1208 1177 167 15 15 chr11 81775582 81775783 -40068073 - B3 SINE B2 -14 202 2 4 1208 623 252 91 83 chr11 81775783 81776087 -40067769 + L1MA8 LINE L1 5922 6227 -64 4 1208 261 83 0 0 chr11 81776087 81776123 -40067733 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1208 507 33 0 0 chr11 81776123 81776183 -40067673 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1208 623 252 91 83 chr11 81776183 81776240 -40067616 + L1MA8 LINE L1 6228 6286 -5 4 1208 182 283 0 0 chr11 81777092 81777138 -40066718 - MIRb SINE MIR -103 165 120 4 1208 207 0 0 0 chr11 81777277 81777300 -40066556 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1208 212 171 0 0 chr11 81777899 81777940 -40065916 + A-rich Low_complexity Low_complexity 1 41 0 4 1208 363 87 29 14 chr11 81780695 81780765 -40063091 + (GA)n Simple_repeat Simple_repeat 1 71 0 4 1208 477 0 0 0 chr11 81782868 81782921 -40060935 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1208 414 0 0 0 chr11 81783032 81783078 -40060778 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1208 235 300 32 53 chr11 81783216 81783311 -40060545 + RLTR25A LTR ERVK 697 789 -314 4 1208 248 382 27 13 chr11 81783703 81783851 -40060005 - MIRb SINE MIR -97 165 18 4 1208 186 296 17 77 chr11 81784484 81784601 -40059255 + MIRb SINE MIR 28 137 -131 4 1208 181 312 29 106 chr11 81784726 81784830 -40059026 + L4 LINE RTE 1739 1834 -195 4 1208 1183 184 9 19 chr11 81786205 81786415 -40057441 - B3 SINE B2 0 216 9 4 1208 196 308 20 81 chr11 81786508 81786607 -40057249 + MIRm SINE MIR 51 143 -133 4 1208 198 171 0 0 chr11 81786629 81786670 -40057186 + (CTG)n Simple_repeat Simple_repeat 2 42 0 4 1209 321 307 66 46 chr11 81789744 81789917 -40053939 + MIR SINE MIR 3 172 -90 4 1209 393 304 181 21 chr11 81791012 81791200 -40052656 - MER20 DNA MER1_type -1 218 1 4 1209 414 201 68 15 chr11 81791401 81791501 -40052355 + B4 SINE B4 2 125 -40 4 1209 432 0 0 0 chr11 81791503 81791551 -40052305 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1209 208 301 110 31 chr11 81791635 81791762 -40052094 - MIR3 SINE MIR -51 157 21 4 1209 2330 201 48 18 chr11 81792264 81792710 -40051146 + MT2A LTR ERVL 7 469 -64 4 1209 333 0 0 0 chr11 81792710 81792747 -40051109 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1209 2330 201 48 18 chr11 81792747 81792769 -40051087 + MT2A LTR ERVL 470 489 -44 4 1209 357 75 0 0 chr11 81792769 81792822 -40051034 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 4 1209 2330 201 48 18 chr11 81792822 81792853 -40051003 + MT2A LTR ERVL 490 522 -11 4 1209 835 264 41 36 chr11 81793236 81793293 -40050563 + ID SINE ID 4 53 -171 4 1209 1519 214 107 52 chr11 81793293 81793677 -40050179 + RLTR16 LTR ERVK 1 399 -106 4 1209 819 73 0 0 chr11 81793677 81793801 -40050055 + (TG)n Simple_repeat Simple_repeat 2 125 0 4 1209 1519 214 107 52 chr11 81793801 81793895 -40049961 + RLTR16 LTR ERVK 400 504 -1 4 1209 835 264 41 36 chr11 81793895 81794057 -40049799 + ID_B1 SINE B4 54 224 0 4 1209 717 287 96 75 chr11 81794455 81794737 -40049119 + B4 SINE B4 1 288 -4 4 1209 297 342 17 124 chr11 81796616 81796793 -40047063 - MamGypLTR3 LTR Gypsy 0 839 682 4 1209 333 0 0 0 chr11 81797671 81797708 -40046148 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1209 228 281 83 50 chr11 81798328 81798448 -40045408 - L2b LINE L2 -26 3349 3226 4 1209 570 252 16 16 chr11 81798819 81798944 -40044912 + ORR1E LTR MaLR 1 125 -234 4 1209 1010 261 94 4 chr11 81799588 81799853 -40044003 + B4A SINE B4 2 290 -2 4 1209 1465 52 16 5 chr11 81800093 81800285 -40043571 - B2_Mm2 SINE B2 0 195 2 4 1209 432 139 0 0 chr11 81801339 81801418 -40042438 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1209 203 162 0 0 chr11 81801467 81801504 -40042352 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1209 1003 273 31 41 chr11 81801504 81801798 -40042058 - B4A SINE B4 0 292 2 4 1209 778 285 34 33 chr11 81803155 81803508 -40040348 + L1MC1 LINE L1 5720 6101 -1684 4 1209 238 244 23 23 chr11 81803611 81803699 -40040157 + L1MC1 LINE L1 6244 6331 -2 4 1209 28 48 0 0 chr11 81803861 81803903 -40039953 + AT_rich Low_complexity Low_complexity 1 42 0 4 1209 304 337 0 0 chr11 81804009 81804095 -40039761 + (CA)n Simple_repeat Simple_repeat 1 86 0 4 1209 225 243 0 0 chr11 81804149 81804219 -40039637 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1209 808 284 5 25 chr11 81804225 81804427 -40039429 - B4A SINE B4 0 292 95 4 1209 261 321 12 12 chr11 81805296 81805378 -40038478 - MLT1A1 LTR MaLR 0 365 284 4 1209 297 274 63 0 chr11 81805477 81805572 -40038284 - MLT1A1 LTR MaLR -283 125 25 4 1209 180 0 0 0 chr11 81805925 81805945 -40037911 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1209 546 240 257 43 chr11 81806038 81806319 -40037537 + MTE2b LTR MaLR 4 344 -35 4 1209 247 333 53 18 chr11 81806816 81807042 -40036814 + L1ME3A LINE L1 4592 4825 -1321 4 1209 234 307 0 0 chr11 81807135 81807210 -40036646 - L1M5 LINE L1 -310 5863 5789 4 1209 293 360 107 0 chr11 81807214 81807475 -40036381 + L1ME3A LINE L1 4869 5157 -989 4 1209 2092 172 40 43 chr11 81807497 81807892 -40035964 - ORR1B1 LTR MaLR 0 394 1 4 1209 438 20 0 0 chr11 81808255 81808306 -40035550 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1209 548 311 81 58 chr11 81808561 81809043 -40034813 + L1ME3A LINE L1 5354 5846 -327 4 1209 843 253 61 162 chr11 81809051 81809480 -40034376 + MTE2a LTR MaLR 20 379 0 4 1209 320 250 125 32 chr11 81809580 81809754 -40034102 + HAL1N1_MD LINE L1 5631 5751 -373 4 1209 188 358 88 6 chr11 81810263 81810423 -40033433 - MIRb SINE MIR -57 211 39 4 1209 202 152 17 17 chr11 81812139 81812199 -40031657 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1209 458 33 0 16 chr11 81812199 81812260 -40031596 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1209 714 225 88 0 chr11 81812356 81812516 -40031340 + B4 SINE B4 2 175 -117 4 1209 346 241 105 53 chr11 81812450 81812564 -40031292 + B1_Mus1 SINE Alu 25 144 -4 4 1209 320 164 18 0 chr11 81812681 81812736 -40031120 - MLT1I LTR MaLR -7 404 349 4 1209 243 0 0 0 chr11 81813433 81813460 -40030396 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1209 329 295 158 29 chr11 81815241 81815412 -40028444 - L1M4 LINE L1 -1720 4924 4732 4 1209 494 269 19 0 chr11 81815413 81815521 -40028335 - PB1D7 SINE Alu -2 118 9 4 1209 253 298 35 12 chr11 81815447 81815532 -40028324 - B4A SINE B4 -125 167 81 4 1209 332 288 117 5 chr11 81815658 81815864 -40027992 + L1MA5A LINE L1 5708 5936 -364 4 1209 734 116 32 46 chr11 81815932 81816212 -40027644 + (CA)n Simple_repeat Simple_repeat 1 276 0 4 1209 263 288 12 75 chr11 81816478 81816528 -40027328 - L1M4 LINE L1 -2929 3715 3678 4 1209 790 241 80 0 chr11 81816528 81816727 -40027129 - B3 SINE B2 0 216 2 4 1209 263 288 12 75 chr11 81816727 81816849 -40027007 - L1M4 LINE L1 -2967 3677 3554 4 1209 394 315 64 83 chr11 81816902 81817033 -40026823 - L1M4 LINE L1 -5413 1129 1002 4 1209 785 160 8 228 chr11 81817033 81817292 -40026564 + B3 SINE B2 1 202 -14 4 1209 394 315 64 83 chr11 81817292 81817582 -40026274 - L1M4 LINE L1 -5541 1001 717 4 1209 783 333 7 32 chr11 81818949 81819228 -40024628 + B4A SINE B4 21 292 0 4 1209 201 185 30 15 chr11 81819264 81819330 -40024526 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 4 1209 483 18 0 0 chr11 81819339 81819395 -40024461 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1209 211 336 84 63 chr11 81819548 81819691 -40024165 - MIRb SINE MIR -117 151 6 5 1209 440 260 92 12 chr11 81819800 81820157 -40023699 + Lx9 LINE L1 7231 7644 0 5 1209 365 226 108 40 chr11 81821242 81821491 -40022365 - RMER17D LTR ERVK -463 426 161 5 1209 207 337 83 54 chr11 81821969 81822173 -40021683 + MIR SINE MIR 39 248 -14 5 1209 190 414 0 0 chr11 81822212 81822299 -40021557 + L2a LINE L2 3322 3408 -18 5 1209 1354 240 10 17 chr11 81822755 81823048 -40020808 + B4 SINE B4 2 292 0 5 1209 333 0 0 0 chr11 81823053 81823090 -40020766 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1209 657 25 0 0 chr11 81823090 81823168 -40020688 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 1209 251 308 44 88 chr11 81823432 81823592 -40020264 - MER5A1 DNA MER1_type 0 166 14 5 1209 193 103 0 0 chr11 81823666 81823695 -40020161 - L2b LINE L2 -18 3357 3329 5 1209 894 295 51 37 chr11 81824806 81824932 -40018924 + Lx8 LINE L1 6923 7047 -426 5 1209 225 0 0 0 chr11 81824932 81824957 -40018899 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1209 894 295 51 37 chr11 81824957 81825260 -40018596 + Lx8 LINE L1 7048 7358 -115 5 1209 241 234 156 18 chr11 81825882 81825991 -40017865 + L2b LINE L2 3249 3372 -3 5 1209 366 136 0 0 chr11 81826323 81826404 -40017452 + (A)n Simple_repeat Simple_repeat 1 81 0 5 1209 1936 99 106 64 chr11 81826680 81826992 -40016864 + ORR1A4 LTR MaLR 5 329 0 5 1209 216 0 0 0 chr11 81827048 81827072 -40016784 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1209 1248 91 0 0 chr11 81827072 81827247 -40016609 + (GA)n Simple_repeat Simple_repeat 2 177 0 5 1209 537 44 0 0 chr11 81827669 81827737 -40016119 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1209 717 12 0 0 chr11 81828132 81828214 -40015642 + (CCA)n Simple_repeat Simple_repeat 3 84 0 5 1209 405 0 0 0 chr11 81828214 81828259 -40015597 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1209 428 289 51 102 chr11 81828683 81828918 -40014938 - MIR SINE MIR -21 241 19 5 1209 237 262 8 16 chr11 81830812 81830940 -40012916 + CT-rich Low_complexity Low_complexity 1 127 0 5 1209 708 45 0 0 chr11 81831023 81831112 -40012744 - L1Md_A LINE L1 -567 6015 5927 5 1209 4736 47 0 9 chr11 81831112 81831691 -40012165 + L1Md_F2 LINE L1 6009 6582 0 5 1209 188 283 89 54 chr11 81832337 81832449 -40011407 + MIR SINE MIR 118 233 -29 5 1209 1228 326 67 4 chr11 81833330 81833810 -40010046 - MLT2B1 LTR ERVL -8 512 3 5 1209 1620 240 22 5 chr11 81834285 81834653 -40009203 + MTEa LTR MaLR 4 377 -2 5 1209 2972 134 9 0 chr11 81836815 81837264 -40006592 - RLTR11B LTR ERVK 0 453 1 5 1209 758 238 12 24 chr11 81838074 81838238 -40005618 + RSINE1 SINE B4 4 165 0 5 1209 225 287 0 0 chr11 81838238 81838374 -40005482 + (CA)n Simple_repeat Simple_repeat 1 136 0 5 1209 453 242 0 0 chr11 81838405 81838570 -40005286 + (CA)n Simple_repeat Simple_repeat 2 166 0 5 1209 249 264 52 74 chr11 81840537 81840672 -40003184 + MIR3 SINE MIR 15 146 -62 5 1209 796 178 31 37 chr11 81840678 81840841 -40003015 + B2_Mm2 SINE B2 1 162 -33 5 1209 207 0 0 0 chr11 81840841 81840864 -40002992 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1209 590 248 35 0 chr11 81840887 81841028 -40002828 + B1F SINE Alu 3 148 -1 5 1209 342 270 51 51 chr11 81842328 81842445 -40001411 - PB1D10 SINE Alu 0 117 1 5 1209 897 100 0 0 chr11 81843326 81843456 -40000400 + (TC)n Simple_repeat Simple_repeat 1 130 0 5 1209 425 299 19 0 chr11 81843570 81843677 -40000179 + B1F1 SINE Alu 1 109 -40 5 1209 279 215 0 0 chr11 81843845 81843910 -39999946 - MIRc SINE MIR -143 125 61 5 1209 3105 77 7 7 chr11 81844143 81844563 -39999293 + BGLII LTR ERVK 2 421 0 5 1209 1102 51 43 0 chr11 81847440 81847578 -39996278 + B1_Mm SINE Alu 4 147 0 5 1209 305 254 76 48 chr11 81848304 81848449 -39995407 + MIRb SINE MIR 97 245 -23 5 1209 306 0 0 0 chr11 81849655 81849689 -39994167 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1209 21 36 0 0 chr11 81850919 81850947 -39992909 + AT_rich Low_complexity Low_complexity 1 28 0 5 1209 238 326 132 0 chr11 81852886 81853015 -39990841 - MLT1D-int LTR MaLR -1220 151 6 5 1209 296 195 39 0 chr11 81853025 81853102 -39990754 - MLT1D LTR MaLR -2 503 424 5 1209 428 98 9 171 chr11 81853163 81853274 -39990582 - Lx4A LINE L1 -54 7004 6912 5 1209 278 303 60 53 chr11 81853710 81853860 -39989996 + MLT2B3 LTR ERVL 284 434 -120 5 1209 213 154 0 0 chr11 81853952 81853991 -39989865 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1209 638 269 7 0 chr11 81854090 81854229 -39989627 + RSINE1 SINE B4 4 143 -22 5 1209 252 86 0 0 chr11 81854229 81854264 -39989592 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1209 485 251 196 22 chr11 81854313 81854492 -39989364 - B3A SINE B2 -4 212 3 5 1209 2142 278 54 26 chr11 81855039 81855714 -39988142 - L1MA6 LINE L1 -197 6103 5412 5 1209 1081 243 92 65 chr11 81855714 81856083 -39987773 - MTE2b LTR MaLR 0 379 1 5 1209 2142 278 54 26 chr11 81856083 81856172 -39987684 - L1MA6 LINE L1 -889 5411 5318 5 1209 1112 264 13 13 chr11 81856189 81856504 -39987352 - L1MA6 LINE L1 -1008 5135 4821 5 1209 1042 264 50 4 chr11 81856972 81857234 -39986622 - B4 SINE B4 -16 276 3 5 1209 285 263 31 62 chr11 81857412 81857574 -39986282 - L1MB2 LINE L1 -2 6169 6013 5 1209 250 324 0 23 chr11 81857579 81857685 -39986171 - ID2 SINE ID -46 106 3 5 1209 297 269 78 44 chr11 81857826 81858061 -39985795 - L1MB2 LINE L1 -762 5418 5174 5 1209 288 0 0 0 chr11 81858972 81859004 -39984852 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1209 23 0 0 0 chr11 81860754 81860777 -39983079 + AT_rich Low_complexity Low_complexity 1 23 0 5 1209 180 176 0 0 chr11 81861923 81861957 -39981899 + CT-rich Low_complexity Low_complexity 2 35 0 5 1209 627 266 43 21 chr11 81862023 81862211 -39981645 - ID_B1 SINE B4 -30 194 3 5 1209 383 252 74 9 chr11 81862803 81862911 -39980945 + B1F1 SINE Alu 8 122 -27 5 1209 21 0 0 0 chr11 81862949 81862970 -39980886 + AT_rich Low_complexity Low_complexity 1 21 0 5 1209 359 177 0 16 chr11 81863282 81863408 -39980448 + (TCTCTG)n Simple_repeat Simple_repeat 3 126 0 5 1209 237 296 12 12 chr11 81863683 81863765 -39980091 + MLT1J1 LTR MaLR 99 180 -264 5 1209 1611 240 19 21 chr11 81864465 81864844 -39979012 + MTEa LTR MaLR 2 379 0 5 1209 420 279 119 20 chr11 81865990 81866191 -39977665 + B4A SINE B4 1 221 -71 5 1209 252 0 0 0 chr11 81866253 81866281 -39977575 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1209 182 37 0 36 chr11 81866561 81866589 -39977267 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 5 1209 1009 314 87 3 chr11 81866594 81866952 -39976904 - MTD LTR MaLR -31 388 1 5 1209 260 281 16 0 chr11 81867191 81867255 -39976601 - ID4_ SINE ID -18 65 1 5 1209 325 316 107 17 chr11 81868097 81868274 -39975582 - MIR SINE MIR -42 220 28 5 1209 1863 174 21 55 chr11 81869050 81869433 -39974423 + ORR1C1 LTR MaLR 1 370 -8 5 1209 23 54 0 0 chr11 81869587 81869624 -39974232 + AT_rich Low_complexity Low_complexity 1 37 0 5 1209 21 0 0 0 chr11 81870088 81870109 -39973747 + AT_rich Low_complexity Low_complexity 1 21 0 5 1209 204 40 0 0 chr11 81870924 81870949 -39972907 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 5 1209 214 26 0 73 chr11 81871703 81871744 -39972112 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 5 1209 972 49 0 0 chr11 81872500 81872622 -39971234 + (GGGAGA)n Simple_repeat Simple_repeat 5 126 0 5 1209 282 123 0 0 chr11 81874234 81874291 -39969565 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1209 351 0 0 0 chr11 81874470 81874509 -39969347 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1209 342 0 0 0 chr11 81875323 81875361 -39968495 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1209 271 199 45 0 chr11 81875936 81876014 -39967842 + L1MA4 LINE L1 5850 5934 -240 5 1209 658 200 0 0 chr11 81876272 81876387 -39967469 - B1_Mur1 SINE Alu -2 147 33 5 1209 280 243 120 51 chr11 81876297 81876414 -39967442 - MT2B LTR ERVL -325 276 152 5 1209 24 0 0 0 chr11 81876425 81876449 -39967407 + AT_rich Low_complexity Low_complexity 1 24 0 5 1209 438 53 0 0 chr11 81876709 81876766 -39967090 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1209 306 0 0 0 chr11 81876766 81876799 -39967057 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1209 234 0 0 0 chr11 81876961 81876987 -39966869 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1209 285 185 7 234 chr11 81877294 81877329 -39966527 - MTEb LTR MaLR -34 345 312 5 1209 3403 35 20 32 chr11 81877329 81877769 -39966087 + L1Md_F2 LINE L1 6148 6582 0 5 1209 285 185 7 234 chr11 81877769 81877874 -39965982 - MTEb LTR MaLR -68 311 237 5 1209 1095 76 127 0 chr11 81879777 81879934 -39963922 + B2_Mm1t SINE B2 3 179 -14 5 1209 320 369 75 36 chr11 81880270 81880655 -39963201 - ERVL-E-int LTR ERVL -1184 4483 4084 5 1209 1650 284 22 48 chr11 81880998 81881244 -39962612 + Tigger1 DNA MER2_type 1833 2073 -345 5 1209 1079 222 19 0 chr11 81881244 81881456 -39962400 + B3 SINE B2 1 216 0 5 1209 1650 284 22 48 chr11 81881456 81881797 -39962059 + Tigger1 DNA MER2_type 2074 2405 -13 5 1209 507 95 0 0 chr11 81883428 81883502 -39960354 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1209 324 333 171 0 chr11 81883526 81883655 -39960201 - RSINE1 SINE B4 -12 153 3 5 1209 851 298 31 41 chr11 81885117 81885411 -39958445 + B4A SINE B4 2 292 0 5 1209 726 12 0 0 chr11 81887037 81887120 -39956736 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 1209 230 250 0 0 chr11 81887128 81887180 -39956676 - B4 SINE B4 -37 255 204 5 1209 1115 246 32 0 chr11 81887185 81887465 -39956391 - B4 SINE B4 -2 290 2 5 1209 204 40 0 0 chr11 81887670 81887695 -39956161 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1209 1524 207 60 101 chr11 81887695 81888093 -39955763 - Lx5 LINE L1 -19 7031 6650 5 1209 2898 114 31 79 chr11 81888982 81889527 -39954329 - MURVY-LTR LTR ERV1 0 519 1 6 1209 674 288 43 13 chr11 81890847 81891079 -39952777 + RMER15 LTR ERVL 337 575 0 6 1209 1373 274 45 95 chr11 81892493 81893094 -39950762 + RMER15 LTR ERVL 1 571 -4 6 1209 2917 150 34 0 chr11 81893094 81893566 -39950290 + Lx4A LINE L1 6571 7058 0 6 1209 1346 262 44 22 chr11 81893658 81893860 -39949996 + MTD LTR MaLR 46 253 -166 6 1209 1535 147 0 0 chr11 81893860 81894085 -39949771 - URR1B DNA MER1_type 0 225 1 6 1209 1346 262 44 22 chr11 81894085 81894248 -39949608 + MTD LTR MaLR 254 418 -1 6 1209 824 249 0 0 chr11 81894828 81895005 -39948851 + B3A SINE B2 6 182 -16 6 1209 279 0 0 0 chr11 81895008 81895039 -39948817 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1209 21 71 0 0 chr11 81895043 81895085 -39948771 + AT_rich Low_complexity Low_complexity 1 42 0 6 1209 244 333 0 0 chr11 81895524 81895599 -39948257 + ID4_ SINE ID 7 81 -2 6 1209 819 158 0 0 chr11 81895623 81895769 -39948087 + (TA)n Simple_repeat Simple_repeat 2 147 0 6 1209 784 283 91 79 chr11 81895849 81896344 -39947512 - Lx8 LINE L1 -1 7472 6972 6 1209 665 257 89 77 chr11 81897240 81897590 -39946266 - ORR1E LTR MaLR -5 354 1 6 1209 247 65 43 0 chr11 81897764 81897810 -39946046 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1209 663 236 116 0 chr11 81897834 81898033 -39945823 - ID_B1 SINE B4 -1 223 2 6 1209 21 0 0 0 chr11 81898052 81898073 -39945783 + AT_rich Low_complexity Low_complexity 1 21 0 6 1209 923 184 69 209 chr11 81898879 81899001 -39944855 + MT2A LTR ERVL 1 103 -430 6 1209 1206 48 0 13 chr11 81899001 81899150 -39944706 + B1_Mus1 SINE Alu 2 148 0 6 1209 923 184 69 209 chr11 81899150 81899180 -39944676 + MT2A LTR ERVL 104 104 -429 6 1209 4315 45 0 4 chr11 81899180 81899697 -39944159 - L1_Mus1 LINE L1 0 6567 6053 6 1209 923 184 69 209 chr11 81899697 81899893 -39943963 + MT2A LTR ERVL 104 301 -232 6 1209 371 152 13 0 chr11 81899950 81900029 -39943827 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 1209 288 72 0 28 chr11 81900030 81900101 -39943755 + MT2A LTR ERVL 465 533 0 6 1209 1955 124 19 0 chr11 81902525 81902840 -39941016 + ORR1A4 LTR MaLR 1 321 -8 6 1209 323 264 0 0 chr11 81903732 81903804 -39940052 + B3A SINE B2 104 175 -23 6 1209 23 0 0 0 chr11 81903810 81903833 -39940023 + AT_rich Low_complexity Low_complexity 1 23 0 6 1209 317 307 71 13 chr11 81904559 81904714 -39939142 + L1MC LINE L1 5106 5269 -877 6 1209 213 39 0 0 chr11 81904730 81904756 -39939100 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1209 1738 314 98 54 chr11 81905260 81905639 -39938217 + Lx8 LINE L1 6484 6870 -603 6 1209 4607 156 3 17 chr11 81905639 81906406 -39937450 + RMER6A LTR ERVK 1 756 0 6 1209 1738 314 98 54 chr11 81906406 81906429 -39937427 + Lx8 LINE L1 6871 6883 -590 6 1209 2353 92 0 60 chr11 81906429 81906776 -39937080 + ORR1A3 LTR MaLR 1 326 0 6 1209 1738 314 98 54 chr11 81906776 81907210 -39936646 + Lx8 LINE L1 6884 7358 -115 6 1209 444 147 0 0 chr11 81907211 81907286 -39936570 + (GGA)n Simple_repeat Simple_repeat 2 76 0 6 1209 325 292 197 31 chr11 81907634 81908139 -39935717 + L1MCb LINE L1 894 1578 -5173 6 1209 1037 310 89 44 chr11 81908204 81909183 -39934673 + L1MCb LINE L1 3015 4037 -2527 6 1209 562 279 94 34 chr11 81909435 81909669 -39934187 + B4A SINE B4 3 250 -42 6 1209 396 0 0 0 chr11 81909736 81909780 -39934076 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1209 305 125 0 18 chr11 81909780 81909837 -39934019 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1209 261 139 0 0 chr11 81909837 81909880 -39933976 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1209 1590 269 125 28 chr11 81910066 81910880 -39932976 + L1MCb LINE L1 4542 5434 -1130 6 1209 227 228 120 75 chr11 81910924 81911057 -39932799 + Lx8 LINE L1 7324 7462 -11 6 1209 768 289 35 19 chr11 81911072 81911333 -39932523 + L1MCb LINE L1 5452 5716 -848 6 1209 3458 180 40 11 chr11 81911365 81911995 -39931861 + Lx5 LINE L1 6347 6994 -56 6 1209 240 35 0 0 chr11 81912004 81912033 -39931823 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 6 1209 1317 311 121 28 chr11 81912078 81913764 -39930092 + L1MB2 LINE L1 4326 6162 -9 6 1209 276 341 36 7 chr11 81914445 81914584 -39929272 + B1F SINE Alu 1 143 -6 6 1209 233 213 43 0 chr11 81918095 81918142 -39925714 + MLT1A1 LTR MaLR 1 49 -316 6 1209 339 311 72 17 chr11 81918523 81918806 -39925050 + MLT1A1 LTR MaLR 58 402 -6 6 1209 621 270 78 62 chr11 81918814 81919134 -39924722 + ORR1E LTR MaLR 1 325 -34 6 1209 305 232 36 12 chr11 81919156 81919239 -39924617 + B4A SINE B4 2 86 -206 6 151 4558 112 61 71 chr11 81919294 81920195 -39923661 - RMER17A2 LTR ERVK -14 892 1 6 1210 655 267 119 27 chr11 81920372 81920861 -39922995 + L1MC LINE L1 3091 3624 -2522 6 1210 189 0 0 0 chr11 81921195 81921216 -39922640 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 6 1210 505 287 71 52 chr11 81921232 81921658 -39922198 + L1MC LINE L1 3787 4252 -1894 6 1210 321 318 27 96 chr11 81921734 81921922 -39921934 + B4A SINE B4 21 195 -97 6 1210 1226 286 103 40 chr11 81921981 81922706 -39921150 + L1MC LINE L1 4288 5058 -1088 6 1210 562 301 92 17 chr11 81922784 81923024 -39920832 - ORR1E LTR MaLR -40 319 62 6 1210 1187 242 125 6 chr11 81923080 81923425 -39920431 - MTD LTR MaLR -16 403 18 6 1210 1128 261 95 84 chr11 81923547 81924112 -39919744 - MTC-int LTR MaLR -168 1090 536 6 1210 1543 263 46 19 chr11 81924336 81924817 -39919039 - RMER5 LTR ERV1 -8 526 33 6 1210 558 29 0 0 chr11 81924956 81925024 -39918832 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1210 259 260 143 20 chr11 81925233 81925331 -39918525 - Lx8 LINE L1 -800 6673 6564 6 1210 382 213 185 0 chr11 81925330 81925438 -39918418 - Lx7 LINE L1 -1787 5909 5782 6 1210 4090 65 6 8 chr11 81925449 81925957 -39917899 - L1_Mus1 LINE L1 -2 6565 6059 6 1210 3883 59 2 0 chr11 81925957 81926537 -39917319 + L1_Mus1 LINE L1 5478 6058 -509 6 1210 825 227 189 9 chr11 81926535 81926757 -39917099 - Lx7 LINE L1 -88 5792 5531 6 1210 227 261 15 0 chr11 81926783 81926848 -39917008 - Lx7 LINE L1 -1070 4810 4745 6 1210 297 0 0 0 chr11 81927411 81927444 -39916412 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1210 414 0 0 0 chr11 81931037 81931083 -39912773 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1210 978 276 57 7 chr11 81931186 81931467 -39912389 - MT2A LTR ERVL -85 448 154 6 1210 631 264 59 138 chr11 81931619 81932024 -39911832 + RLTR14 LTR ERV1 10 382 0 6 1210 1154 189 106 75 chr11 81932024 81932344 -39911512 + MTD LTR MaLR 12 341 -78 6 1210 1077 98 0 0 chr11 81932346 81932489 -39911367 + B1_Mus1 SINE Alu 1 143 -5 6 1210 1114 107 11 0 chr11 81932489 81932666 -39911190 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 6 1210 626 207 18 6 chr11 81932666 81932836 -39911020 + A-rich Low_complexity Low_complexity 3 174 0 6 1210 235 192 244 139 chr11 81934060 81934175 -39909681 + RLTR24 LTR ERV1 385 511 -18 6 1210 322 108 0 26 chr11 81934629 81934705 -39909151 + (TTTG)n Simple_repeat Simple_repeat 2 75 0 6 1210 421 235 0 20 chr11 81934747 81934847 -39909009 - RSINE1 SINE B4 -65 100 3 6 1210 183 42 0 0 chr11 81935093 81935117 -39908739 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1210 1156 68 7 0 chr11 81935489 81935635 -39908221 - B1_Mus2 SINE Alu 0 147 1 6 1210 234 0 0 0 chr11 81935699 81935725 -39908131 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1210 40514 30 0 0 chr11 81936179 81942324 -39901532 - L1Md_T LINE L1 0 6582 481 6 1210 2564 138 53 18 chr11 81942318 81942625 -39901231 - L1_Mur3 LINE L1 -1353 4527 4202 6 1210 3486 30 2 0 chr11 81942625 81943020 -39900836 + MTA_Mm LTR MaLR 1 396 0 6 1210 2564 138 53 18 chr11 81943020 81943205 -39900651 - L1_Mur3 LINE L1 -1679 4201 4018 6 1210 1372 152 116 53 chr11 81943203 81943227 -39900629 + L1_Mur3 LINE L1 4601 4624 -1256 6 1210 243 103 0 0 chr11 81943227 81943266 -39900590 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1210 1372 152 116 53 chr11 81943266 81943560 -39900296 + L1_Mur3 LINE L1 4625 4938 -942 6 1210 2124 175 27 117 chr11 81943556 81944118 -39899738 + Lx7 LINE L1 7153 7663 -33 6 1210 3017 164 76 19 chr11 81944952 81945519 -39898337 - Lx2B LINE L1 -2 6998 6400 6 1210 6395 112 9 2 chr11 81945519 81946470 -39897386 + MusHAL1 LINE L1 1148 2105 -607 6 1210 10715 63 0 1 chr11 81947357 81948713 -39895143 - L1_Mm LINE L1 -933 5364 3984 6 1210 490 319 168 46 chr11 81948716 81948742 -39895114 + L1MC4 LINE L1 6597 6621 -1421 6 1210 351 0 0 0 chr11 81948742 81948781 -39895075 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 6 1210 490 319 168 46 chr11 81948781 81949606 -39894250 + L1MC4 LINE L1 6622 7552 -490 6 1210 330 191 2 0 chr11 81949963 81950046 -39893810 - L1M5 LINE L1 -719 5443 5360 6 1210 451 330 72 10 chr11 81950163 81950469 -39893387 - L1M5 LINE L1 -934 5212 4888 6 1210 622 244 42 52 chr11 81950673 81950885 -39892971 + ORR1D-int LTR MaLR 773 982 -388 6 1210 1511 248 43 53 chr11 81951362 81951779 -39892077 + MTD LTR MaLR 1 413 -6 6 1210 405 0 0 0 chr11 81952171 81952216 -39891640 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1210 308 273 0 68 chr11 81954621 81954739 -39889117 + RMER30 DNA MER1_type 14 123 -79 6 1210 711 124 69 15 chr11 81954754 81954885 -39888971 + B1_Mur4 SINE Alu 11 148 -2 6 1210 300 70 0 0 chr11 81954885 81954928 -39888928 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 1210 566 301 32 21 chr11 81955042 81955232 -39888624 + B3A SINE B2 5 196 -2 6 1210 13025 20 0 0 chr11 81955378 81956857 -39886999 + L1Md_T LINE L1 4108 5586 -297 6 1210 8720 28 0 0 chr11 81956857 81957924 -39885932 + L1Md_T LINE L1 5587 6582 0 6 1210 215 73 49 0 chr11 81958826 81958867 -39884989 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1210 3389 166 80 16 chr11 81959141 81959764 -39884092 + Lx7 LINE L1 6767 7429 -267 6 1210 6726 221 65 12 chr11 81959785 81961222 -39882634 - Lx6 LINE L1 -4 7456 5943 6 1210 5162 160 14 4 chr11 81961221 81962131 -39881725 - L1_Mur3 LINE L1 -638 5242 4324 6 1210 943 105 0 20 chr11 81962125 81962271 -39881585 - L1_Mur3 LINE L1 -3070 2810 2668 6 1210 2870 210 47 6 chr11 81962267 81962977 -39880879 - L1_Mur3 LINE L1 -3931 1949 1211 6 1210 1451 279 62 16 chr11 81963085 81963573 -39880283 + RLTR11A2 LTR ERVK 4 513 -14 6 1210 3095 229 24 28 chr11 81963644 81964408 -39879448 + MYSERV6-int LTR ERVK 8017 8777 -182 6 1210 694 217 27 77 chr11 81964500 81964720 -39879136 + MYSERV-int LTR ERVK 6339 6547 -3 6 1210 838 143 17 11 chr11 81964831 81965008 -39878848 + GA-rich Low_complexity Low_complexity 3 180 0 6 1210 255 31 0 0 chr11 81965289 81965321 -39878535 + (TAA)n Simple_repeat Simple_repeat 3 34 0 6 1210 21 36 0 0 chr11 81965443 81965471 -39878385 + AT_rich Low_complexity Low_complexity 1 28 0 6 1210 755 226 43 24 chr11 81965630 81965839 -39878017 - MTE2a LTR MaLR -166 213 1 6 1210 305 227 232 48 chr11 81966613 81966738 -39877118 + ID_B1 SINE B4 77 224 0 6 1210 212 208 0 19 chr11 81967042 81967096 -39876760 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1210 330 67 0 0 chr11 81967205 81967250 -39876606 + (CATA)n Simple_repeat Simple_repeat 1 45 0 7 1210 414 350 73 34 chr11 81967264 81967468 -39876388 - MLT2B4 LTR ERVL -56 500 289 7 1210 268 253 21 108 chr11 81967466 81967559 -39876297 + MTEa LTR MaLR 15 99 -280 7 1210 269 89 22 0 chr11 81967572 81967617 -39876239 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1210 3270 102 27 0 chr11 81967781 81968321 -39875535 + L1_Mus3 LINE L1 6145 6638 0 7 1210 236 192 19 0 chr11 81968592 81968627 -39875229 + polypyrimidine Low_complexity Low_complexity 20 54 0 7 1210 1039 129 6 6 chr11 81968627 81968806 -39875050 + (TTC)n Simple_repeat Simple_repeat 1 179 0 7 1210 236 192 19 0 chr11 81968806 81968822 -39875034 + polypyrimidine Low_complexity Low_complexity 3 19 0 7 1210 394 212 19 57 chr11 81969162 81969267 -39874589 + MT2A LTR ERVL 1 101 -432 7 1210 4936 68 3 11 chr11 81969306 81969942 -39873914 - L1_Mus1 LINE L1 -2 6565 5935 7 1210 856 207 143 12 chr11 81969942 81970242 -39873614 + MT2A LTR ERVL 104 449 -84 7 1210 369 0 0 0 chr11 81970242 81970283 -39873573 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1210 856 217 102 20 chr11 81970283 81970358 -39873498 + MT2A LTR ERVL 450 524 -9 7 1210 410 19 37 0 chr11 81970363 81970417 -39873439 + (TATG)n Simple_repeat Simple_repeat 2 57 0 7 1210 1806 190 56 64 chr11 81970708 81971176 -39872680 - RMER15 LTR ERVL -90 485 22 7 1210 608 206 59 0 chr11 81971205 81971341 -39872515 + URR1A DNA MER1_type 83 226 0 7 1210 290 250 0 0 chr11 81971425 81971485 -39872371 - RMER15 LTR ERVL -515 60 1 7 1210 770 261 5 32 chr11 81971670 81971856 -39872000 + B3A SINE B2 2 182 -16 7 1210 1813 261 68 19 chr11 81971878 81972455 -39871401 - Lx6 LINE L1 -13 7447 6464 7 1210 363 342 126 16 chr11 81972506 81973014 -39870842 + L1M5 LINE L1 5259 5822 -342 7 1210 1173 68 0 13 chr11 81973051 81973201 -39870655 + B1_Mus1 SINE Alu 1 148 0 7 1210 180 97 0 0 chr11 81973201 81973232 -39870624 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 7 1210 1031 192 107 55 chr11 81973502 81973857 -39869999 + MT2A LTR ERVL 25 540 -61 7 1210 483 18 0 0 chr11 81973857 81973913 -39869943 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1210 3291 128 30 12 chr11 81973916 81974799 -39869057 - RMER17B LTR ERVK -5 953 1 7 1210 225 0 0 0 chr11 81974913 81974938 -39868918 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1210 351 0 0 0 chr11 81974938 81974977 -39868879 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1210 210 169 69 14 chr11 81975333 81975405 -39868451 + (TA)n Simple_repeat Simple_repeat 1 76 0 7 1210 664 288 125 87 chr11 81975825 81976173 -39867683 + MTD LTR MaLR 1 361 -18 7 1210 546 308 102 57 chr11 81976944 81977367 -39866489 + RLTR17 LTR ERVK 125 566 -126 7 1210 242 224 35 0 chr11 81977446 81977504 -39866352 + RLTR31_Mur LTR ERVK 490 549 -4 7 1210 1924 143 0 84 chr11 81977969 81978328 -39865528 - ORR1A4 LTR MaLR 0 329 1 7 1210 10959 136 26 69 chr11 81978328 81980379 -39863477 - ORR1A4-int LTR MaLR 0 1963 1 7 1210 613 84 32 0 chr11 81980379 81980474 -39863382 - ORR1A4 LTR MaLR 0 327 230 7 1210 2603 284 51 51 chr11 81980552 81981823 -39862033 - L1_Mur3 LINE L1 -1306 4574 3304 7 1210 1132 269 148 27 chr11 81981807 81982303 -39861553 + Lx8 LINE L1 6700 7255 -218 7 1210 243 218 0 52 chr11 81983765 81983823 -39860033 + MER5A DNA MER1_type 23 77 -112 7 1210 819 291 29 148 chr11 81984272 81984683 -39859173 - ORR1D2 LTR MaLR -8 362 1 7 1210 186 156 0 0 chr11 81984831 81984863 -39858993 - MER5A DNA MER1_type -26 163 132 7 1210 664 307 91 12 chr11 81985418 81985738 -39858118 - L1M5 LINE L1 -2539 3607 3263 7 1210 525 165 0 0 chr11 81985824 81985921 -39857935 + CT-rich Low_complexity Low_complexity 1 97 0 7 1210 268 24 49 0 chr11 81986062 81986103 -39857753 + (CCCCCA)n Simple_repeat Simple_repeat 3 45 0 7 1210 230 382 0 0 chr11 81986437 81986547 -39857309 + MIR SINE MIR 44 153 -109 7 1210 4298 90 18 34 chr11 81987714 81988325 -39855531 + MT2B LTR ERVL 1 601 0 7 1210 219 407 0 0 chr11 81988959 81989040 -39854816 - ID4 SINE ID -2 81 1 7 1210 941 157 206 6 chr11 81989054 81989234 -39854622 - B3 SINE B2 0 216 1 7 1210 440 93 20 20 chr11 81990738 81990837 -39853019 + (TG)n Simple_repeat Simple_repeat 2 100 0 7 1210 671 68 30 22 chr11 81990878 81991013 -39852843 + (TG)n Simple_repeat Simple_repeat 2 137 0 7 1210 350 311 197 21 chr11 81991030 81991263 -39852593 - B4A SINE B4 -16 276 3 7 1210 321 68 0 0 chr11 81992617 81992661 -39851195 + (GGA)n Simple_repeat Simple_repeat 3 46 0 7 1210 982 69 11 33 chr11 81992662 81992842 -39851014 + (GGAGAA)n Simple_repeat Simple_repeat 5 180 0 7 1210 966 242 35 21 chr11 81993831 81994118 -39849738 + B4 SINE B4 2 292 0 7 1210 371 193 0 117 chr11 81999790 81999884 -39843972 - ID4 SINE ID 0 83 1 7 1210 253 318 108 9 chr11 82001692 82001803 -39842053 - MIR SINE MIR -64 198 77 1 1210 222 37 0 0 chr11 82001939 82001966 -39841890 + (CATCC)n Simple_repeat Simple_repeat 1 27 0 2 1210 417 66 0 0 chr11 82002466 82002527 -39841329 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1210 192 214 54 0 chr11 82002571 82002627 -39841229 - L3 LINE CR1 -858 3631 3573 4 1210 252 299 152 6 chr11 82003185 82003363 -39840493 - MamRep434 DNA TcMar -55 371 168 5 1210 180 323 58 58 chr11 82003518 82003587 -39840269 - L2a LINE L2 -2 3424 3356 6 1210 229 284 74 0 chr11 82003941 82004022 -39839834 - LTR16C LTR ERVL -206 283 197 7 1210 756 274 93 31 chr11 82005048 82005372 -39838484 - MER2 DNA MER2_type 0 345 2 8 1210 735 313 9 28 chr11 82005913 82006130 -39837726 - ID_B1 SINE B4 0 224 12 9 1210 278 317 12 35 chr11 82006332 82006417 -39837439 + MLT1H-int LTR MaLR 1 83 -1326 1 1210 379 338 67 83 chr11 82006716 82007193 -39836663 - MLT1J1-int LTR MaLR -888 521 1 1 1210 239 304 30 124 chr11 82007209 82007378 -39836478 - MLT1J1 LTR MaLR -22 422 270 1 1210 690 317 19 5 chr11 82007764 82007970 -39835886 + ID_B1 SINE B4 16 224 0 1 1210 432 0 0 0 chr11 82008077 82008125 -39835731 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1210 1092 268 18 15 chr11 82009647 82009920 -39833936 + B4A SINE B4 1 274 -18 1 1210 291 71 0 0 chr11 82009926 82009968 -39833888 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1210 329 312 45 79 chr11 82010854 82011056 -39832800 + ORR1E LTR MaLR 2 196 -163 1 1210 254 29 29 0 chr11 82011060 82011095 -39832761 + (TCTCCC)n Simple_repeat Simple_repeat 4 39 0 1 1210 444 332 112 15 chr11 82011455 82011660 -39832196 + RMER15 LTR ERVL 336 560 -15 1 1210 204 182 0 0 chr11 82011868 82011912 -39831944 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1210 626 225 6 0 chr11 82011925 82012103 -39831753 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1210 805 327 53 9 chr11 82012302 82012623 -39831233 - MER57F LTR ERV1 -79 357 23 2 1210 531 0 0 0 chr11 82013529 82013588 -39830268 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1210 441 0 0 0 chr11 82013588 82013636 -39830220 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1210 776 220 20 0 chr11 82013645 82013795 -39830061 - B3A SINE B2 -45 153 1 2 1210 513 244 53 30 chr11 82014131 82014262 -39829594 + B3A SINE B2 27 160 -38 2 1210 252 100 0 0 chr11 82014275 82014315 -39829541 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1210 398 294 39 19 chr11 82014326 82014576 -39829280 - MER34B-int LTR ERV1 -1656 3700 3278 2 1210 968 300 52 72 chr11 82014584 82015295 -39828561 - MER34B-int LTR ERV1 -1921 3435 2739 2 1210 1287 226 58 17 chr11 82015594 82016056 -39827800 - RMER6A LTR ERVK -93 627 64 2 1210 366 23 0 0 chr11 82016056 82016099 -39827757 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1210 1287 284 76 81 chr11 82016099 82016164 -39827692 - RMER6A LTR ERVK -612 144 133 2 1210 448 262 62 75 chr11 82016266 82016542 -39827314 - ORR1E LTR MaLR 0 379 93 2 1210 1242 157 5 41 chr11 82016906 82017125 -39826731 - URR1A DNA MER1_type -15 211 1 3 1210 2806 101 48 30 chr11 82017562 82018022 -39825834 - RMER6A LTR ERVK 0 756 289 3 1210 251 353 52 15 chr11 82019443 82019578 -39824278 - MIRb SINE MIR -86 182 43 3 1210 195 336 128 15 chr11 82020448 82020581 -39823275 - L2b LINE L2 -3 3372 3225 3 1210 218 363 79 24 chr11 82020699 82020826 -39823030 - MIRm SINE MIR -88 188 55 3 1210 369 332 361 6 chr11 82021291 82021629 -39822227 - L2a LINE L2 -2 3424 2967 3 1210 279 327 80 80 chr11 82021696 82021935 -39821921 - L2a LINE L2 -701 2718 2480 3 1210 442 281 22 0 chr11 82022460 82022549 -39821307 + B4A SINE B4 17 107 -185 3 1210 264 91 0 0 chr11 82022876 82022920 -39820936 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1210 25 0 0 0 chr11 82023565 82023590 -39820266 + AT_rich Low_complexity Low_complexity 1 25 0 3 1210 1150 287 11 22 chr11 82024947 82025218 -39818638 + B4 SINE B4 2 269 -23 3 1210 459 113 0 0 chr11 82025218 82025289 -39818567 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1210 1082 254 58 23 chr11 82027142 82027400 -39816456 + B4 SINE B4 3 269 -23 4 1210 414 0 0 0 chr11 82027402 82027448 -39816408 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1210 25 31 0 0 chr11 82027460 82027492 -39816364 + AT_rich Low_complexity Low_complexity 1 32 0 4 1210 22 0 0 0 chr11 82027730 82027752 -39816104 + AT_rich Low_complexity Low_complexity 1 22 0 4 1210 282 331 84 30 chr11 82027932 82028063 -39815793 - MIRc SINE MIR -56 212 75 4 1210 499 226 336 34 chr11 82028732 82029053 -39814803 + MTD LTR MaLR 1 403 -16 4 1210 244 276 35 0 chr11 82029290 82029348 -39814508 - MER46C DNA MER2_type -11 327 268 4 1210 305 312 9 60 chr11 82029503 82029619 -39814237 - PB1D10 SINE Alu 0 117 8 4 1210 378 0 0 0 chr11 82030516 82030558 -39813298 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1210 683 24 0 12 chr11 82030558 82030644 -39813212 + (GAA)n Simple_repeat Simple_repeat 3 87 0 5 1210 1746 114 107 3 chr11 82031021 82031312 -39812544 - ORR1A4 LTR MaLR -8 321 1 5 1210 191 341 11 43 chr11 82031523 82031615 -39812241 - MIRc SINE MIR -145 123 35 5 1210 391 375 106 22 chr11 82032928 82033201 -39810655 - MLT1I LTR MaLR 0 411 116 5 1210 1777 182 6 9 chr11 82034337 82034651 -39809205 - MTD LTR MaLR -1 418 106 5 1210 820 138 24 0 chr11 82034651 82034774 -39809082 + B1_Mur4 SINE Alu 1 126 -24 5 1210 486 109 21 11 chr11 82034805 82034898 -39808958 + (GA)n Simple_repeat Simple_repeat 1 94 0 5 1210 478 253 0 0 chr11 82034901 82034996 -39808860 - MTD LTR MaLR -322 97 3 5 1210 253 303 59 36 chr11 82035442 82035695 -39808161 - L1M4 LINE L1 -2977 3169 2911 5 1210 225 338 20 66 chr11 82035971 82036123 -39807733 + MIRc SINE MIR 18 162 -106 5 1210 228 272 122 42 chr11 82036358 82036542 -39807314 + L2b LINE L2 3076 3268 -107 5 1210 2218 268 84 20 chr11 82036575 82037315 -39806541 - Lx8 LINE L1 -70 7403 6617 6 1210 199 259 17 17 chr11 82037434 82037493 -39806363 - L2c LINE L2 -4 3383 3325 6 1210 365 287 18 36 chr11 82038149 82038261 -39805595 + HAL1-2a_MD LINE L1 2314 2423 -601 6 1210 188 284 44 15 chr11 82038279 82038347 -39805509 - MIR SINE MIR -163 99 30 6 1210 23 0 0 0 chr11 82039909 82039932 -39803924 + GC_rich Low_complexity Low_complexity 1 23 0 6 1210 230 269 90 105 chr11 82040915 82041048 -39802808 - L2c LINE L2 -3 3384 3254 6 1210 278 304 13 0 chr11 82041210 82041289 -39802567 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1210 1022 279 29 14 chr11 82042007 82042222 -39801634 + B4 SINE B4 1 214 -78 6 1210 495 0 0 0 chr11 82042222 82042277 -39801579 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 6 1210 1022 279 29 14 chr11 82042277 82042341 -39801515 + B4 SINE B4 215 283 -9 6 1210 484 122 22 11 chr11 82042373 82042464 -39801392 + GA-rich Low_complexity Low_complexity 4 95 0 6 1210 346 322 65 19 chr11 82042464 82042619 -39801237 + HAL1-3A_ME LINE L1 2284 2445 -413 7 1210 322 321 19 0 chr11 82043401 82043507 -39800349 + MLT1J2 LTR MaLR 15 122 -326 7 1210 260 255 89 30 chr11 82044795 82044896 -39798960 + L3 LINE CR1 4306 4412 -77 7 1210 451 261 8 42 chr11 82044950 82045070 -39798786 + PB1D10 SINE Alu 1 116 -1 7 1210 258 292 124 0 chr11 82045457 82045546 -39798310 + MLT1J2 LTR MaLR 441 540 -55 7 1210 858 271 56 52 chr11 82045649 82045937 -39797919 + B4A SINE B4 4 292 0 7 1210 459 0 0 0 chr11 82046494 82046545 -39797311 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1210 353 205 54 20 chr11 82046563 82046712 -39797144 + (TG)n Simple_repeat Simple_repeat 1 154 0 7 1210 474 253 95 60 chr11 82046866 82047034 -39796822 - B4 SINE B4 -87 205 32 7 1210 450 0 0 0 chr11 82047336 82047386 -39796470 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1210 309 344 37 73 chr11 82049305 82049578 -39794278 + L2 LINE L2 2741 3003 -416 7 1210 258 182 0 0 chr11 82049776 82049842 -39794014 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 7 1210 306 308 38 25 chr11 82049853 82050013 -39793843 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 7 1211 372 59 0 0 chr11 82051282 82051333 -39792523 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1211 1030 209 17 64 chr11 82052330 82052565 -39791291 + URR1B DNA MER1_type 1 224 -1 8 1211 308 288 58 116 chr11 82053366 82053598 -39790258 + MIRb SINE MIR 2 226 -42 8 1211 404 144 21 0 chr11 82053677 82053774 -39790082 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 8 1211 438 20 0 0 chr11 82053781 82053832 -39790024 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1211 1500 243 80 5 chr11 82054683 82055056 -39788800 + MT2A LTR ERVL 133 533 0 8 1211 1116 215 14 0 chr11 82055215 82055424 -39788432 - URR1B DNA MER1_type 0 225 14 8 1211 396 0 0 0 chr11 82055562 82055606 -39788250 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1211 994 207 56 14 chr11 82055847 82056063 -39787793 + URR1B DNA MER1_type 1 225 0 8 1211 1662 251 19 3 chr11 82056568 82056940 -39786916 - MTE2b LTR MaLR -1 378 1 8 1211 540 302 142 8 chr11 82057230 82057427 -39786429 + B4A SINE B4 5 232 -60 9 1211 664 325 161 12 chr11 82057427 82057670 -39786186 + B4A SINE B4 2 280 -12 9 1211 540 302 142 8 chr11 82057670 82057726 -39786130 + B4A SINE B4 233 291 -1 9 1211 252 260 0 40 chr11 82057742 82057794 -39786062 + B4 SINE B4 218 268 -24 9 1211 213 94 0 0 chr11 82057794 82057826 -39786030 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1211 252 260 0 40 chr11 82057826 82057849 -39786007 + B4 SINE B4 269 290 -2 9 1211 1159 82 0 0 chr11 82057887 82058034 -39785822 + B1_Mus2 SINE Alu 1 147 0 9 1211 35 0 0 0 chr11 82058034 82058069 -39785787 + AT_rich Low_complexity Low_complexity 1 35 0 9 1211 195 139 0 0 chr11 82060612 82060648 -39783208 + (TCC)n Simple_repeat Simple_repeat 1 36 0 9 1211 986 228 5 10 chr11 82061009 82061213 -39782643 + ID_B1 SINE B4 3 205 -19 9 1211 201 135 0 51 chr11 82061217 82061256 -39782600 + GA-rich Low_complexity Low_complexity 4 40 0 9 1211 2239 214 28 55 chr11 82061631 82062196 -39781660 - RMER15 LTR ERVL 0 575 26 9 1211 279 283 10 42 chr11 82062231 82062327 -39781529 - RMER15 LTR ERVL -482 93 1 1 1211 1177 166 36 9 chr11 82062678 82062897 -39780959 - URR1A DNA MER1_type 0 226 2 1 1211 188 312 20 88 chr11 82063046 82063148 -39780708 - MIRb SINE MIR -140 128 34 1 1211 181 204 0 39 chr11 82063150 82063201 -39780655 - L2 LINE L2 -1208 2211 2163 1 1211 215 355 0 43 chr11 82063949 82064043 -39779813 - MIRb SINE MIR -76 192 103 1 1211 191 326 84 40 chr11 82064148 82064325 -39779531 - L2b LINE L2 -214 3161 2973 1 1211 245 98 24 0 chr11 82065160 82065201 -39778655 + (TCTCCC)n Simple_repeat Simple_repeat 4 45 0 1 1211 267 302 121 70 chr11 82066922 82067178 -39776678 + L2b LINE L2 3107 3375 0 1 1211 254 303 38 70 chr11 82067741 82067954 -39775902 - MIRc SINE MIR -38 230 25 1 1211 203 281 15 15 chr11 82068100 82068165 -39775691 + MIR SINE MIR 68 132 -76 1 1211 226 291 122 135 chr11 82068287 82068517 -39775339 + LTR81A LTR ERV1? 766 992 -358 1 1211 1280 47 0 0 chr11 82072146 82072294 -39771562 + B1_Mus1 SINE Alu 1 148 0 1 1211 291 345 170 14 chr11 82072626 82072773 -39771083 + MER5B DNA MER1_type 2 171 -7 1 1211 1223 293 28 34 chr11 82073759 82074226 -39769630 - L1ME3A LINE L1 -4 6169 5706 1 1211 201 74 0 0 chr11 82074725 82074752 -39769104 + (CCCCCA)n Simple_repeat Simple_repeat 1 27 0 1 1211 434 265 83 38 chr11 82075137 82075294 -39768562 - RSINE1 SINE B4 0 165 2 1 1211 563 344 80 37 chr11 82075392 82075893 -39767963 - L1MEb LINE L1 -5175 1821 1328 1 1211 256 299 65 9 chr11 82075903 82076011 -39767845 - L1MEb LINE L1 -5604 1392 1279 1 1211 1073 223 14 0 chr11 82076053 82076264 -39767592 - B3 SINE B2 -1 215 2 1 1211 432 306 23 98 chr11 82077183 82077450 -39766406 + MIRb SINE MIR 6 266 -2 1 1211 230 285 115 60 chr11 82078093 82078276 -39765580 + MIRb SINE MIR 43 235 -33 1 1211 592 270 13 13 chr11 82078354 82078504 -39765352 - MER5A1 DNA MER1_type -15 151 2 1 1211 211 262 0 0 chr11 82080494 82080536 -39763320 + C-rich Low_complexity Low_complexity 5 46 0 1 1211 239 369 52 15 chr11 82080562 82080697 -39763159 + L2b LINE L2 3236 3375 0 1 1211 199 114 22 22 chr11 82080761 82080806 -39763050 + T-rich Low_complexity Low_complexity 1 45 0 1 1211 291 315 102 0 chr11 82080818 82080926 -39762930 - PB1D9 SINE Alu -1 119 1 1 1211 554 278 0 8 chr11 82080933 82081060 -39762796 - B1F SINE Alu -7 142 17 1 1211 232 213 106 0 chr11 82081115 82081162 -39762694 - ID2 SINE ID -27 56 5 1 1211 216 288 156 23 chr11 82081975 82082103 -39761753 - MIRb SINE MIR -57 211 67 1 1211 336 221 50 40 chr11 82083116 82083215 -39760641 + PB1D10 SINE Alu 18 117 0 1 1211 430 275 174 51 chr11 82083366 82083619 -39760237 - Tigger13a DNA MER2_type -335 436 153 1 1211 1017 142 0 0 chr11 82084175 82084395 -39759461 + (TCC)n Simple_repeat Simple_repeat 1 220 0 1 1211 198 358 95 34 chr11 82085819 82085998 -39757858 + L2c LINE L2 3163 3352 -35 1 1211 453 294 52 65 chr11 82086550 82086779 -39757077 - L3 LINE CR1 -48 4441 4216 1 1211 197 294 69 96 chr11 82087467 82087655 -39756201 - MIRc SINE MIR -37 231 49 1 1211 462 148 12 12 chr11 82088806 82088888 -39754968 + B4 SINE B4 3 84 -208 1 1211 436 63 51 0 chr11 82089022 82089101 -39754755 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 1 1211 256 367 54 18 chr11 82091295 82091406 -39752450 - L3 LINE CR1 -1118 3371 3257 1 1211 605 314 62 58 chr11 82091810 82092084 -39751772 - MLT1A0 LTR MaLR -17 348 74 1 1211 231 349 0 11 chr11 82092100 82092187 -39751669 + (CATG)n Simple_repeat Simple_repeat 3 88 0 1 1211 924 278 13 77 chr11 82092189 82092370 -39751486 - B4A SINE B4 0 292 129 1 1211 1077 246 209 14 chr11 82092370 82092481 -39751375 + MTD LTR MaLR 1 108 -311 1 1211 1011 25 0 0 chr11 82092481 82092603 -39751253 + (TG)n Simple_repeat Simple_repeat 2 123 0 1 1211 1077 246 209 14 chr11 82092603 82092841 -39751015 + MTD LTR MaLR 109 417 -2 1 1211 924 278 13 77 chr11 82092841 82092971 -39750885 - B4A SINE B4 -164 128 1 1 1211 266 222 21 8 chr11 82092971 82093033 -39750823 - MLT1A0 LTR MaLR -285 80 19 1 1211 202 333 118 12 chr11 82093843 82094013 -39749843 - L2 LINE L2 -344 3075 2888 1 1211 627 319 58 88 chr11 82094786 82095182 -39748674 + MLT1I LTR MaLR 22 405 -6 1 1211 1200 69 0 0 chr11 82095304 82095449 -39748407 - B1_Mus1 SINE Alu -2 146 2 1 1211 1090 274 31 41 chr11 82095680 82095872 -39747984 - MTE2a LTR MaLR 0 379 188 1 1211 240 35 0 0 chr11 82095872 82095901 -39747955 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 1 1211 1090 294 42 40 chr11 82095901 82096106 -39747750 - MTE2a LTR MaLR -183 236 14 1 1211 314 0 49 0 chr11 82096109 82096150 -39747706 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1211 1150 72 0 0 chr11 82096150 82096288 -39747568 - B1_Mus1 SINE Alu -10 138 1 1 1211 909 287 4 40 chr11 82098055 82098280 -39745576 - B4 SINE B4 0 292 76 1 1211 243 146 0 0 chr11 82098280 82098321 -39745535 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 1211 1467 265 149 20 chr11 82098342 82098946 -39744910 - Lx8 LINE L1 -4 7469 6788 1 1211 374 233 58 0 chr11 82098948 82099034 -39744822 - B4A SINE B4 -200 92 2 1 1211 187 270 66 26 chr11 82099079 82099155 -39744701 + MIRc SINE MIR 69 147 -121 1 1211 1096 208 75 30 chr11 82099394 82099662 -39744194 + B4A SINE B4 9 288 -4 1 1211 220 91 22 22 chr11 82099686 82099731 -39744125 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1211 407 331 19 44 chr11 82099731 82099881 -39743975 - MER5B DNA MER1_type -28 150 3 1 1211 242 314 108 6 chr11 82099953 82099979 -39743877 - MIR SINE MIR -1 261 233 1 1211 387 0 0 0 chr11 82099979 82100022 -39743834 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1211 292 299 81 8 chr11 82100022 82100152 -39743704 - MIRb SINE MIR -30 232 90 1 1211 615 48 0 0 chr11 82101151 82101234 -39742622 + (TC)n Simple_repeat Simple_repeat 1 83 0 1 1211 521 292 108 26 chr11 82101282 82101514 -39742342 + HAL1 LINE L1 943 1193 -1314 1 1211 529 237 99 0 chr11 82101535 82101666 -39742190 + B1F2 SINE Alu 1 144 -5 1 1211 257 259 23 23 chr11 82101666 82101745 -39742111 + MLT1H LTR MaLR 10 87 -462 1 1211 596 200 6 0 chr11 82102006 82102176 -39741680 + GA-rich Low_complexity Low_complexity 2 172 0 1 1211 474 18 0 0 chr11 82102565 82102620 -39741236 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 1211 326 107 18 0 chr11 82102623 82102679 -39741177 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 1 1211 885 76 32 6 chr11 82102695 82102853 -39741003 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 1 1211 180 209 113 62 chr11 82102968 82103065 -39740791 + L3 LINE CR1 2310 2411 -2078 1 1211 231 333 0 0 chr11 82103247 82103337 -39740519 + HAL1 LINE L1 2250 2339 -168 1 1211 478 244 174 50 chr11 82103383 82103642 -39740214 + B4 SINE B4 2 292 0 1 1211 311 105 0 17 chr11 82103645 82103703 -39740153 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1211 522 0 0 0 chr11 82103843 82103901 -39739955 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1211 371 186 110 30 chr11 82105425 82105525 -39738331 - B4A SINE B4 0 292 185 1 1211 718 241 215 8 chr11 82106101 82106348 -39737508 - RMER15 LTR ERVL -3 572 275 1 1211 483 265 45 45 chr11 82106352 82106506 -39737350 - RMER15 LTR ERVL -421 154 1 1 1211 592 247 75 94 chr11 82107199 82107400 -39736456 + B3A SINE B2 2 198 0 1 1211 519 319 29 0 chr11 82107425 82107563 -39736293 + ID_B1 SINE B4 81 222 -2 1 1211 881 272 87 43 chr11 82107595 82107872 -39735984 + B4A SINE B4 4 292 0 1 1211 561 198 0 0 chr11 82107955 82108071 -39735785 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 1211 1580 216 63 3 chr11 82108072 82108421 -39735435 - ORR1D2 LTR MaLR 0 370 1 1 1211 474 282 4 5 chr11 82108422 82108531 -39735325 + PB1D10 SINE Alu 8 115 -34 1 1211 232 330 21 32 chr11 82108572 82108666 -39735190 - MIR SINE MIR -144 118 26 1 1211 205 337 0 11 chr11 82110189 82110276 -39733580 - MIRc SINE MIR -140 128 43 1 1211 1324 237 30 70 chr11 82111325 82111697 -39732159 - MTEb LTR MaLR 0 379 23 1 1211 689 312 57 31 chr11 82111924 82112377 -39731479 + L1MB3 LINE L1 5571 6035 -148 1 1211 507 278 0 17 chr11 82112427 82112544 -39731312 - PB1D10 SINE Alu 0 117 3 1 1211 255 280 9 123 chr11 82112463 82112569 -39731287 - MT2B2 LTR ERVL -343 241 148 1 1211 385 198 26 26 chr11 82112573 82112687 -39731169 - L1MB2 LINE L1 -30 6141 6028 1 1211 268 217 83 0 chr11 82112696 82112756 -39731100 + PB1D10 SINE Alu 10 74 -43 1 1211 420 20 0 0 chr11 82112777 82112826 -39731030 + (TAG)n Simple_repeat Simple_repeat 1 49 0 1 1211 560 254 59 70 chr11 82112906 82113092 -39730764 + B3A SINE B2 5 188 -10 1 1211 2248 173 63 2 chr11 82113168 82113562 -39730294 + MTC LTR MaLR 1 418 -3 1 1211 5921 175 74 28 chr11 82113564 82114539 -39729317 + MTC-int LTR MaLR 1 998 -260 1 1211 261 0 0 0 chr11 82114539 82114568 -39729288 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1211 5921 175 74 28 chr11 82114568 82114791 -39729065 + MTC-int LTR MaLR 999 1254 -4 1 1211 2115 126 153 3 chr11 82114795 82115161 -39728695 + MTC LTR MaLR 1 421 0 1 1211 1140 194 29 12 chr11 82115585 82115830 -39728026 + BGLII_B LTR ERVK 193 441 0 1 1211 363 278 260 0 chr11 82115857 82116011 -39727845 + ID_B1 SINE B4 1 194 -30 1 1211 180 0 0 0 chr11 82116011 82116031 -39727825 + (CATA)n Simple_repeat Simple_repeat 3 22 0 1 1211 323 269 16 67 chr11 82116031 82116286 -39727570 - RMER17A LTR ERVK -352 399 158 1 1211 401 320 73 3 chr11 82116298 82116491 -39727365 - MIR SINE MIR -37 225 20 1 1211 314 311 152 0 chr11 82117399 82117531 -39726325 - MIR SINE MIR -71 191 40 1 1211 207 333 60 51 chr11 82117703 82117820 -39726036 - MIRc SINE MIR -120 148 31 1 1211 219 333 114 51 chr11 82117988 82118146 -39725710 + MIRb SINE MIR 55 222 -46 1 1211 286 123 15 30 chr11 82119415 82119462 -39724394 + (ATGGTG)n Simple_repeat Simple_repeat 6 52 0 1 1211 180 0 0 0 chr11 82119462 82119482 -39724374 + (GGA)n Simple_repeat Simple_repeat 2 21 0 1 1211 286 123 15 30 chr11 82119482 82119501 -39724355 + (ATGGTG)n Simple_repeat Simple_repeat 5 23 0 1 1211 236 245 0 0 chr11 82119502 82119551 -39724305 + GA-rich Low_complexity Low_complexity 3 51 0 2 1211 510 264 122 30 chr11 82119617 82119781 -39724075 - MIRb SINE MIR -57 211 33 2 1211 194 294 57 114 chr11 82119843 82119966 -39723890 - MIR SINE MIR -60 148 33 2 1211 573 258 15 30 chr11 82120315 82120447 -39723409 + ID_B1 SINE B4 89 218 -6 2 1211 196 333 14 0 chr11 82120490 82120562 -39723294 + MIRb SINE MIR 193 265 -3 1 1211 620 161 0 8 chr11 82120918 82121043 -39722813 + (CA)n Simple_repeat Simple_repeat 1 124 0 2 1211 671 289 5 28 chr11 82121351 82121565 -39722291 + MIRb SINE MIR 60 268 0 2 1211 230 359 94 18 chr11 82123070 82123240 -39720616 + MIR3 SINE MIR 20 202 -6 2 1211 330 194 0 0 chr11 82124200 82124267 -39719589 + GA-rich Low_complexity Low_complexity 2 68 0 2 1211 206 204 0 53 chr11 82124276 82124333 -39719523 + G-rich Low_complexity Low_complexity 2 55 0 2 1211 396 0 0 0 chr11 82124351 82124395 -39719461 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1211 377 141 24 0 chr11 82124638 82124723 -39719133 - Lx4A LINE L1 0 7058 6972 2 1211 215 225 0 0 chr11 82125007 82125047 -39718809 + CT-rich Low_complexity Low_complexity 3 42 0 2 1211 259 342 73 27 chr11 82126300 82126450 -39717406 - MIRb SINE MIR -26 242 86 2 1211 450 256 11 0 chr11 82126612 82126702 -39717154 + MER44D DNA MER2_type 5 95 -610 2 1211 324 353 94 58 chr11 82127004 82127493 -39716363 + L2a LINE L2 2749 3325 -101 2 1211 2518 118 79 8 chr11 82127493 82127885 -39715971 - MTC LTR MaLR 0 421 2 2 1211 324 304 37 95 chr11 82127885 82127989 -39715867 + L2a LINE L2 3326 3423 -3 2 1211 1022 220 33 14 chr11 82128223 82128435 -39715421 + B3 SINE B2 1 216 0 2 1211 182 262 72 36 chr11 82128548 82128631 -39715225 - L2b LINE L2 -78 3297 3212 2 1211 182 271 21 0 chr11 82128738 82128786 -39715070 + MIRb SINE MIR 214 262 -6 2 1211 713 247 85 18 chr11 82128788 82128953 -39714903 + B3A SINE B2 1 176 -22 2 1211 211 161 36 0 chr11 82128954 82129010 -39714846 + CT-rich Low_complexity Low_complexity 3 60 0 2 1211 471 35 0 0 chr11 82129047 82129104 -39714752 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1211 220 380 9 18 chr11 82129481 82129591 -39714265 + MIRb SINE MIR 17 125 -143 2 1211 201 318 8 108 chr11 82129586 82129706 -39714150 - MIRc SINE MIR -97 171 64 2 1211 865 155 23 20 chr11 82130138 82130546 -39713310 + (TGGA)n Simple_repeat Simple_repeat 1 409 0 2 1211 180 254 164 0 chr11 82130661 82130728 -39713128 + L2 LINE L2 2868 2945 -474 2 1211 212 227 152 0 chr11 82131619 82131685 -39712171 - MIR SINE MIR -131 131 56 2 1211 263 270 92 67 chr11 82133053 82133172 -39710684 + MIR3 SINE MIR 38 159 -49 2 1211 195 314 53 71 chr11 82134373 82134486 -39709370 + MIR SINE MIR 49 159 -103 2 1211 389 325 90 18 chr11 82134859 82135025 -39708831 - L2 LINE L2 -484 2935 2758 2 1211 207 290 0 16 chr11 82135083 82135146 -39708710 + MIR SINE MIR 184 245 -17 2 1211 501 127 0 0 chr11 82135280 82135359 -39708497 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 1211 624 313 39 14 chr11 82135461 82135743 -39708113 - B4A SINE B4 -2 290 2 2 1211 639 121 0 0 chr11 82136450 82136549 -39707307 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1211 380 243 29 0 chr11 82136553 82136623 -39707233 - ID4_ SINE ID -10 73 2 2 1211 465 273 57 14 chr11 82136626 82136767 -39707089 - B1F SINE Alu 0 149 3 2 1211 264 245 36 153 chr11 82136922 82137144 -39706712 + L1MC5 LINE L1 6876 7071 -890 2 1211 393 242 150 10 chr11 82137257 82137357 -39706499 - PB1 SINE Alu -2 125 12 2 1211 229 322 102 11 chr11 82137288 82137376 -39706480 - ID_B1 SINE B4 -59 165 70 2 1211 180 217 0 0 chr11 82137424 82137470 -39706386 + (ATG)n Simple_repeat Simple_repeat 3 48 0 2 1211 300 331 193 35 chr11 82137711 82138027 -39705829 + L1MC5 LINE L1 7305 7670 -291 2 1211 300 274 7 133 chr11 82138028 82138171 -39705685 - MLT1H LTR MaLR 0 549 425 2 1211 369 0 0 0 chr11 82138240 82138281 -39705575 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1211 811 250 1 4 chr11 82138305 82138496 -39705360 - B3A SINE B2 -13 203 18 2 1211 421 47 31 0 chr11 82138498 82138562 -39705294 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2 1211 350 224 70 6 chr11 82138583 82138740 -39705116 + (TCTA)n Simple_repeat Simple_repeat 1 167 0 2 1211 333 267 104 82 chr11 82139042 82139262 -39704594 + L1MC5 LINE L1 7688 7912 -49 2 1211 319 293 45 75 chr11 82139630 82139763 -39704093 - MLT1K LTR MaLR -118 477 349 2 1211 238 274 90 62 chr11 82139804 82139841 -39704015 - MLT1K LTR MaLR -375 220 187 2 1211 585 0 0 0 chr11 82139841 82139906 -39703950 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1211 238 274 90 62 chr11 82139906 82140012 -39703844 - MLT1K LTR MaLR -409 186 73 2 1211 246 317 183 16 chr11 82140076 82140264 -39703592 - L2a LINE L2 0 3426 3194 2 1211 197 274 86 86 chr11 82140831 82140902 -39702954 - MIRb SINE MIR -132 136 59 2 1211 261 0 0 0 chr11 82140902 82140931 -39702925 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1211 197 274 86 86 chr11 82140931 82140975 -39702881 - MIRb SINE MIR -210 58 21 2 1211 460 322 62 36 chr11 82141791 82141815 -39702041 - ID_B1 SINE B4 -41 251 150 2 1211 523 279 85 8 chr11 82141815 82141945 -39701911 - B1F SINE Alu 0 149 10 2 1211 460 322 62 36 chr11 82141945 82141960 -39701896 - ID_B1 SINE B4 -41 149 76 2 1211 262 223 189 11 chr11 82142097 82142192 -39701664 + MER53 DNA hAT 19 130 -63 2 1211 414 0 0 0 chr11 82143752 82143798 -39700058 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1211 224 146 0 94 chr11 82143802 82143855 -39700001 - B1_Mm SINE Alu -1 146 99 2 1211 2690 61 3 3 chr11 82144112 82144439 -39699417 + ORR1A2 LTR MaLR 1 327 0 2 1211 268 416 20 8 chr11 82144628 82144875 -39698981 + L3 LINE CR1 3896 4145 -344 2 1211 180 336 81 50 chr11 82146566 82146726 -39697130 + MIRb SINE MIR 42 206 -62 2 1211 1208 251 51 79 chr11 82146771 82147125 -39696731 + MTE2a LTR MaLR 1 344 -35 2 1211 1418 81 16 0 chr11 82147126 82147312 -39696544 - B2_Mm2 SINE B2 -3 192 4 2 1211 2949 39 0 0 chr11 82147520 82147857 -39695999 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1211 9209 21 3 0 chr11 82147857 82148936 -39694920 - IAPEz-int LTR ERVK 0 6481 5400 2 1211 20137 39 46 14 chr11 82148914 82151494 -39692362 - IAPEz-int LTR ERVK -3811 2670 8 2 1211 2949 39 0 0 chr11 82151494 82151831 -39692025 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1211 1109 238 98 40 chr11 82151926 82152272 -39691584 + ORR1D2 LTR MaLR 1 366 -4 2 1211 228 313 78 65 chr11 82154281 82154756 -39689100 - L2b LINE L2 -84 3291 2813 2 1211 22 0 0 0 chr11 82154779 82154801 -39689055 + AT_rich Low_complexity Low_complexity 1 22 0 2 1211 328 279 43 43 chr11 82154844 82154960 -39688896 - B3 SINE B2 -13 203 88 2 1211 363 248 39 67 chr11 82154972 82155076 -39688780 + B4A SINE B4 191 291 -1 2 1211 534 188 24 49 chr11 82155144 82155267 -39688589 + PB1D7 SINE Alu 1 120 0 2 1211 1124 214 156 56 chr11 82155324 82155645 -39688211 + MTEa LTR MaLR 27 379 0 2 1211 315 0 0 0 chr11 82156300 82156335 -39687521 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2 1211 4987 58 22 3 chr11 82156392 82157033 -39686823 - L1Md_F2 LINE L1 -3 6579 5927 2 1211 2048 118 17 61 chr11 82157076 82157420 -39686436 + ORR1A4 LTR MaLR 1 329 0 2 1211 462 331 11 84 chr11 82157781 82157972 -39685884 + B3A SINE B2 6 182 -16 2 1211 39 22 0 0 chr11 82157999 82158045 -39685811 + AT_rich Low_complexity Low_complexity 1 46 0 2 1211 256 213 30 76 chr11 82158806 82158872 -39684984 + ORR1E LTR MaLR 39 101 -258 2 1211 251 324 27 95 chr11 82159411 82159559 -39684297 - L2c LINE L2 -4 3371 3238 2 1211 330 246 64 56 chr11 82160104 82160229 -39683627 + Charlie15a DNA MER1_type 98 223 -1 2 1211 480 301 130 57 chr11 82160615 82160946 -39682910 + ORR1E LTR MaLR 1 355 -4 2 1211 1216 167 17 75 chr11 82161109 82161348 -39682508 - URR1A DNA MER1_type -1 225 1 2 1211 303 342 48 54 chr11 82161780 82161947 -39681909 + MIRc SINE MIR 34 199 -69 2 1211 741 301 17 81 chr11 82162042 82162523 -39681333 - L1MB7 LINE L1 -10 6174 5725 2 1211 369 0 0 0 chr11 82162557 82162598 -39681258 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1211 773 312 106 4 chr11 82162628 82162863 -39680993 - B4A SINE B4 -22 270 12 2 1211 360 0 0 0 chr11 82163465 82163505 -39680351 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1211 183 42 0 0 chr11 82163968 82163992 -39679864 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1211 310 350 37 0 chr11 82164561 82164723 -39679133 - MIRb SINE MIR -83 185 9 2 1211 236 299 82 10 chr11 82165169 82165267 -39678589 + MIRc SINE MIR 41 145 -123 2 1211 583 296 38 38 chr11 82165487 82165807 -39678049 + MLT1A1 LTR MaLR 49 408 0 2 1211 279 175 0 0 chr11 82165944 82166001 -39677855 + (CAT)n Simple_repeat Simple_repeat 1 57 0 2 1211 593 268 83 29 chr11 82166318 82166522 -39677334 + MER20 DNA MER1_type 3 217 -2 2 1211 1372 245 29 122 chr11 82166808 82167185 -39676671 + MTE2b LTR MaLR 8 349 -30 2 1211 6537 166 52 7 chr11 82167337 82169325 -39674531 - Lx5 LINE L1 -138 6912 4886 2 1211 201 39 0 0 chr11 82170325 82170351 -39673505 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1211 768 290 22 52 chr11 82170563 82170927 -39672929 - L1MC5 LINE L1 -72 7889 7537 2 1211 453 208 100 0 chr11 82170928 82171048 -39672808 + MER102a DNA MER1_type 53 184 -146 2 1211 330 324 46 87 chr11 82171082 82171278 -39672578 - RMER30 DNA MER1_type -8 194 7 2 1211 230 0 33 0 chr11 82171646 82171676 -39672180 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 2 1211 450 232 0 0 chr11 82171733 82171815 -39672041 - ID4_ SINE ID 0 83 2 2 1211 262 344 0 0 chr11 82171894 82171955 -39671901 + RSINE1 SINE B4 84 144 -21 2 1211 414 0 0 0 chr11 82171959 82172005 -39671851 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1211 274 315 11 11 chr11 82172036 82172126 -39671730 - PB1D10 SINE Alu -18 99 10 2 1211 525 16 0 0 chr11 82172145 82172207 -39671649 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1211 1209 184 56 199 chr11 82172354 82172736 -39671120 + ORR1C2 LTR MaLR 1 331 -53 2 1211 1205 48 0 33 chr11 82172736 82172888 -39670968 + B1_Mus1 SINE Alu 2 148 0 3 1211 1209 184 56 199 chr11 82172888 82172953 -39670903 + ORR1C2 LTR MaLR 332 384 0 2 1211 271 280 118 0 chr11 82173298 82173391 -39670465 - L2c LINE L2 -101 3286 3183 3 1211 244 342 84 13 chr11 82173561 82173715 -39670141 - L4 LINE RTE -183 1846 1682 3 1211 212 336 102 9 chr11 82173871 82173979 -39669877 + L2c LINE L2 3260 3377 -10 3 1211 527 266 198 0 chr11 82175795 82176047 -39667809 + L1MB3 LINE L1 5769 6070 -113 3 1211 359 313 0 0 chr11 82176073 82176156 -39667700 + ID4_ SINE ID 1 83 0 3 1211 260 343 0 0 chr11 82176215 82176282 -39667574 + RSINE1 SINE B4 90 156 -9 3 1211 279 0 0 0 chr11 82176283 82176314 -39667542 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1211 233 189 229 0 chr11 82177450 82177529 -39666327 - MIRc SINE MIR -59 149 60 3 1211 757 279 23 5 chr11 82178561 82178777 -39665079 + ID_B1 SINE B4 5 224 0 3 1211 238 330 147 0 chr11 82178968 82179077 -39664779 - MIR SINE MIR -55 153 29 3 1211 565 170 36 18 chr11 82179971 82180139 -39663717 + (TGAA)n Simple_repeat Simple_repeat 1 171 0 3 1211 213 94 0 0 chr11 82180159 82180191 -39663665 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 3 1211 1151 278 44 41 chr11 82180764 82181084 -39662772 + MTEa LTR MaLR 9 333 -46 3 1211 207 0 0 0 chr11 82181084 82181107 -39662749 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1211 1151 278 44 41 chr11 82181107 82181150 -39662706 + MTEa LTR MaLR 334 373 -6 3 1211 702 209 7 0 chr11 82181165 82181313 -39662543 + MTEa-int LTR MaLR 15 163 -1417 3 1212 486 0 0 0 chr11 82182578 82182632 -39661224 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1212 962 242 108 15 chr11 82182893 82183153 -39660703 - B4A SINE B4 -4 288 5 3 1212 253 337 22 0 chr11 82183180 82183269 -39660587 - MIR SINE MIR -87 121 31 3 1212 373 261 168 32 chr11 82183455 82183645 -39660211 - MIRc SINE MIR -32 236 21 3 1212 318 26 0 0 chr11 82183707 82183746 -39660110 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1212 321 310 40 35 chr11 82184254 82184406 -39659450 + MIR SINE MIR 9 146 -122 3 1212 202 131 16 32 chr11 82184965 82185028 -39658828 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 3 1212 198 209 0 0 chr11 82185174 82185217 -39658639 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 1212 1003 247 27 71 chr11 82186058 82186354 -39657502 + B4A SINE B4 2 284 -8 3 1212 244 218 18 0 chr11 82186362 82186417 -39657439 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1212 250 333 86 13 chr11 82186847 82186999 -39656857 - MLT1I LTR MaLR -4 407 245 3 1212 324 296 0 0 chr11 82187029 82187171 -39656685 + (TG)n Simple_repeat Simple_repeat 1 142 0 3 1212 780 238 0 0 chr11 82187204 82187452 -39656404 + (TG)n Simple_repeat Simple_repeat 1 248 0 3 1212 219 303 53 0 chr11 82187537 82187613 -39656243 - L2a LINE L2 0 3426 3347 3 1212 212 77 26 0 chr11 82188902 82188941 -39654915 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1212 712 317 14 14 chr11 82188943 82189154 -39654702 - ID_B1 SINE B4 -13 211 1 3 1212 225 276 71 62 chr11 82189462 82189574 -39654282 + RMER17D LTR ERVK 427 539 -350 3 1212 576 0 0 0 chr11 82189592 82189656 -39654200 + (CAAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1212 363 409 39 0 chr11 82189783 82190013 -39653843 + MIRc SINE MIR 5 243 -25 3 1212 538 284 0 7 chr11 82190085 82190234 -39653622 - HAL1-2a_MD LINE L1 -532 2492 2345 3 1212 234 266 28 17 chr11 82190247 82190435 -39653421 + (ATGGTG)n Simple_repeat Simple_repeat 1 190 0 3 1212 210 143 0 0 chr11 82191122 82191157 -39652699 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1212 249 244 163 0 chr11 82191850 82191936 -39651920 + MIRb SINE MIR 88 187 -81 3 1212 336 245 106 0 chr11 82192663 82192757 -39651099 - MIR SINE MIR -137 125 22 3 1212 211 396 43 32 chr11 82193127 82193315 -39650541 + MIRb SINE MIR 38 227 -41 3 1212 333 0 0 0 chr11 82194177 82194214 -39649642 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1212 513 0 0 0 chr11 82194316 82194373 -39649483 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1212 252 355 76 17 chr11 82194791 82195029 -39648827 + L2c LINE L2 2914 3165 -222 3 1212 2745 16 0 0 chr11 82195646 82195975 -39647881 - L1Md_A LINE L1 0 6582 6269 3 1212 1009 286 98 17 chr11 82196417 82196773 -39647083 + MLT1B LTR MaLR 1 385 -5 3 1212 686 245 159 5 chr11 82197542 82197743 -39646113 + B4A SINE B4 5 236 -56 3 1212 351 0 0 0 chr11 82197770 82197809 -39646047 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1212 432 0 0 0 chr11 82197809 82197856 -39646000 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1212 21 0 0 0 chr11 82198027 82198048 -39645808 + GC_rich Low_complexity Low_complexity 1 21 0 3 1212 705 290 24 155 chr11 82198811 82199146 -39644710 + B4A SINE B4 2 292 0 3 1212 21 0 0 0 chr11 82202564 82202585 -39641271 + GC_rich Low_complexity Low_complexity 1 21 0 3 1212 181 257 25 75 chr11 82203599 82203679 -39640177 - L2a LINE L2 -275 3151 3076 3 1212 251 302 36 79 chr11 82206693 82206815 -39637041 + ID_B1 SINE B4 91 205 -19 3 1212 186 43 0 0 chr11 82206815 82206838 -39637018 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1212 251 302 36 79 chr11 82206838 82206855 -39637001 + ID_B1 SINE B4 206 223 -1 3 1212 234 0 0 0 chr11 82207236 82207262 -39636594 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1212 208 154 26 0 chr11 82207584 82207623 -39636233 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1212 399 127 0 0 chr11 82207808 82207871 -39635985 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1212 1966 149 89 16 chr11 82208592 82208961 -39634895 - MTC LTR MaLR -8 413 18 3 1212 1273 179 4 13 chr11 82209168 82209394 -39634462 - URR1B DNA MER1_type 0 225 2 3 1212 198 143 0 0 chr11 82209868 82209903 -39633953 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 3 1212 361 301 16 83 chr11 82210814 82211006 -39632850 + MIR SINE MIR 82 260 -2 3 1212 198 0 0 0 chr11 82212284 82212306 -39631550 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 1212 201 39 0 0 chr11 82213187 82213213 -39630643 + (G)n Simple_repeat Simple_repeat 1 26 0 3 1212 306 328 161 8 chr11 82213525 82213768 -39630088 + L2a LINE L2 2788 3067 -352 3 1212 198 330 45 0 chr11 82213888 82213976 -39629880 + L2a LINE L2 3297 3388 -38 3 1212 373 328 58 21 chr11 82214147 82214337 -39629519 + MIR SINE MIR 66 262 0 3 1212 231 186 33 17 chr11 82214629 82214689 -39629167 + G-rich Low_complexity Low_complexity 2 62 0 3 1212 243 146 0 0 chr11 82215151 82215192 -39628664 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1212 617 243 140 5 chr11 82215713 82215920 -39627936 - Lx8 LINE L1 -612 6861 6627 3 1212 232 259 17 0 chr11 82218027 82218085 -39625771 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1212 791 274 85 0 chr11 82218105 82218306 -39625550 - B4A SINE B4 0 292 75 3 1212 345 267 0 0 chr11 82218665 82218781 -39625075 + (TA)n Simple_repeat Simple_repeat 1 116 0 3 1212 698 156 43 43 chr11 82218974 82219115 -39624741 + B1_Mur4 SINE Alu 5 145 -5 3 1212 333 0 0 0 chr11 82222451 82222488 -39621368 + (TAA)n Simple_repeat Simple_repeat 1 37 0 3 1212 279 0 0 0 chr11 82222488 82222519 -39621337 + (TTA)n Simple_repeat Simple_repeat 2 32 0 3 1212 339 25 0 0 chr11 82222782 82222822 -39621034 + (CAG)n Simple_repeat Simple_repeat 2 41 0 3 1212 420 206 22 0 chr11 82223320 82223412 -39620444 - PB1D7 SINE Alu 0 120 27 3 1212 253 321 88 18 chr11 82223756 82223870 -39619986 - MIRb SINE MIR -119 149 28 3 1212 456 225 6 22 chr11 82224547 82224729 -39619127 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1212 212 194 0 46 chr11 82224781 82224846 -39619010 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1212 436 252 66 73 chr11 82224945 82225082 -39618774 - RSINE1 SINE B4 -2 163 28 3 1212 445 265 36 7 chr11 82225121 82225258 -39618598 - B1F2 SINE Alu -8 141 1 3 1212 467 248 73 0 chr11 82225292 82225401 -39618455 - PB1D10 SINE Alu 0 117 1 3 1212 1182 143 138 14 chr11 82225439 82225704 -39618152 - ORR1B2 LTR MaLR -37 337 1 3 1212 261 0 0 0 chr11 82226615 82226644 -39617212 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1212 432 0 0 0 chr11 82226876 82226924 -39616932 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1212 231 36 0 0 chr11 82227567 82227595 -39616261 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1212 483 33 0 0 chr11 82227605 82227666 -39616190 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1212 216 222 19 0 chr11 82228263 82228317 -39615539 - ID2 SINE ID -28 55 1 3 1212 195 316 91 49 chr11 82229585 82229728 -39614128 + L2a LINE L2 3275 3423 -3 3 1212 1078 282 81 25 chr11 82230464 82230861 -39612995 - MTD LTR MaLR 0 419 1 3 1212 243 103 0 0 chr11 82232034 82232073 -39611783 + (TCTCCC)n Simple_repeat Simple_repeat 5 43 0 3 1212 501 17 0 0 chr11 82232073 82232131 -39611725 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1212 486 0 0 0 chr11 82232138 82232192 -39611664 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1212 429 20 0 0 chr11 82232461 82232511 -39611345 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 3 1212 1173 202 194 26 chr11 82232769 82233109 -39610747 + MTD LTR MaLR 1 397 -22 3 1212 206 315 115 2 chr11 82233924 82234079 -39609777 + MIR SINE MIR 6 185 -83 3 1212 468 174 0 0 chr11 82234357 82234449 -39609407 + (TTCA)n Simple_repeat Simple_repeat 3 94 0 3 1212 193 324 64 37 chr11 82234779 82234888 -39608968 - MIR SINE MIR -86 176 65 3 1212 468 315 35 35 chr11 82235815 82235986 -39607870 - MIRb SINE MIR -75 193 23 3 1212 309 269 41 41 chr11 82236048 82236145 -39607711 - L1ME4a LINE L1 -7 6117 6021 3 1212 525 80 0 0 chr11 82236275 82236350 -39607506 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1212 285 248 12 6 chr11 82236538 82236700 -39607156 + (TG)n Simple_repeat Simple_repeat 1 163 0 3 1212 216 336 8 16 chr11 82236703 82236804 -39607052 + (TATG)n Simple_repeat Simple_repeat 3 103 0 4 1212 192 97 0 0 chr11 82236804 82236835 -39607021 + (TGAG)n Simple_repeat Simple_repeat 4 34 0 4 1212 216 336 8 16 chr11 82236835 82236854 -39607002 + (TATG)n Simple_repeat Simple_repeat 4 22 0 4 1212 256 231 108 0 chr11 82236854 82236919 -39606937 - ID2 SINE ID -11 72 1 4 1212 411 21 0 0 chr11 82237785 82237833 -39606023 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1212 295 364 0 18 chr11 82239577 82239689 -39604167 + ID_B1 SINE B4 67 176 -48 4 1212 439 256 0 0 chr11 82239612 82239702 -39604154 + PB1D10 SINE Alu 19 108 -9 4 1212 2363 111 12 3 chr11 82239705 82240029 -39603827 - ORR1A2 LTR MaLR 0 327 1 4 1212 9818 130 88 5 chr11 82240029 82241812 -39602044 - ORR1A2-int LTR MaLR 0 1963 33 4 1212 2330 101 19 3 chr11 82241825 82242143 -39601713 - ORR1A2 LTR MaLR 0 327 5 4 1212 384 111 0 0 chr11 82242143 82242206 -39601650 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1212 203 81 54 0 chr11 82242213 82242250 -39601606 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1212 278 359 62 0 chr11 82242833 82242961 -39600895 - L2a LINE L2 -1 3425 3290 4 1212 388 256 0 11 chr11 82243202 82243289 -39600567 + ID_B1 SINE B4 100 185 -39 4 1212 307 283 0 71 chr11 82243289 82243301 -39600555 + PB1D10 SINE Alu 19 110 -7 4 1212 1650 176 64 55 chr11 82243321 82243743 -39600113 - RMER15 LTR ERVL -148 427 2 4 1212 2023 166 140 11 chr11 82244331 82244781 -39599075 - RLTR28 LTR ERVL -5 519 12 4 1212 716 178 217 0 chr11 82244840 82245020 -39598836 + URR1B DNA MER1_type 7 225 0 4 1212 376 239 133 23 chr11 82245462 82245595 -39598261 - PB1D10 SINE Alu 0 148 1 4 1212 780 293 58 18 chr11 82245715 82245993 -39597863 - B4A SINE B4 -3 289 1 4 1212 556 239 0 0 chr11 82247480 82247593 -39596263 - RSINE1 SINE B4 -43 122 10 4 1212 29 28 0 0 chr11 82248280 82248316 -39595540 + GC_rich Low_complexity Low_complexity 1 36 0 4 1212 35 63 0 0 chr11 82248401 82248464 -39595392 + GC_rich Low_complexity Low_complexity 1 63 0 4 1212 457 305 56 7 chr11 82248872 82249014 -39594842 - RSINE1 SINE B4 -2 163 15 4 1212 258 347 190 30 chr11 82249580 82249880 -39593976 + L3 LINE CR1 3890 4237 -252 4 1212 752 256 62 19 chr11 82249919 82250130 -39593726 + ID_B1 SINE B4 2 221 -3 4 1212 408 122 68 0 chr11 82252731 82252805 -39591051 - ORR1D1 LTR MaLR 0 374 296 4 1212 2194 157 28 3 chr11 82252805 82253169 -39590687 - ORR1D1 LTR MaLR 0 374 2 4 1212 235 273 80 0 chr11 82253169 82253182 -39590674 - ORR1D1 LTR MaLR -81 286 274 4 1212 215 261 337 0 chr11 82254986 82255113 -39588743 + MIR SINE MIR 37 206 -56 4 1212 348 331 37 8 chr11 82255198 82255323 -39588533 - MLT1-int LTR MaLR -759 612 484 4 1212 591 278 9 25 chr11 82255323 82255403 -39588453 + ID SINE ID 1 82 -210 4 1212 247 293 46 83 chr11 82255403 82255511 -39588345 + PB1D10 SINE Alu 1 104 -13 4 1212 249 248 180 74 chr11 82255523 82255645 -39588211 - MLT1-int LTR MaLR -876 495 361 4 1212 1303 108 113 5 chr11 82260798 82261002 -39582854 - URR1A DNA MER1_type 0 226 1 4 1212 207 322 92 0 chr11 82261016 82261103 -39582753 + MIRm SINE MIR 180 274 -2 4 1212 322 265 0 0 chr11 82261154 82261222 -39582634 - BC1_Mm scRNA scRNA -71 81 14 4 1212 375 270 24 73 chr11 82261242 82261366 -39582490 - B1F SINE Alu -1 148 31 4 1212 274 330 17 0 chr11 82263589 82263707 -39580149 - MIRb SINE MIR -48 220 101 4 1212 295 304 111 62 chr11 82265153 82265297 -39578559 - RMER15 LTR ERVL 0 575 425 4 1212 368 263 29 50 chr11 82265894 82266034 -39577822 + MamRep434 DNA TcMar 151 287 -139 4 1212 206 321 52 52 chr11 82266283 82266398 -39577458 + MIR SINE MIR 148 262 0 4 1212 186 43 0 0 chr11 82266596 82266619 -39577237 + (CGTG)n Simple_repeat Simple_repeat 3 25 0 4 1212 504 162 225 53 chr11 82269366 82269535 -39574321 + B4 SINE B4 9 206 -86 4 1212 2258 113 22 80 chr11 82269567 82269979 -39573877 - ORR1B1 LTR MaLR 0 394 7 4 1212 620 217 43 0 chr11 82270008 82270146 -39573710 - B1F SINE Alu -3 146 3 4 1212 620 314 30 40 chr11 82271944 82272143 -39571713 - B3A SINE B2 0 198 2 4 1212 468 280 73 25 chr11 82272342 82272591 -39571265 - Tigger5 DNA MER2_type 0 2406 2309 4 1212 699 299 20 15 chr11 82272592 82272672 -39571184 + ID SINE ID 3 83 -141 4 1212 423 287 36 29 chr11 82272672 82272812 -39571044 + B1F SINE Alu 1 141 -8 4 1212 276 225 11 22 chr11 82272813 82272904 -39570952 + GA-rich Low_complexity Low_complexity 1 90 0 4 1212 446 305 135 21 chr11 82273080 82273368 -39570488 - MER57C2 LTR ERV1 -65 369 49 4 1212 1546 253 70 0 chr11 82274888 82275275 -39568581 + MT2A LTR ERVL 1 414 -119 4 1212 325 342 45 0 chr11 82275475 82275586 -39568270 - MER58A DNA MER1_type -59 165 50 4 1212 1834 307 59 46 chr11 82275609 82276504 -39567352 + Zaphod DNA Tip100 79 985 -3046 4 1212 293 336 0 59 chr11 82276525 82276645 -39567211 + MER33 DNA MER1_type 22 139 -185 4 1212 763 196 10 111 chr11 82276645 82276852 -39567004 + B3A SINE B2 3 188 -10 4 1212 293 336 0 59 chr11 82276852 82276883 -39566973 + MER33 DNA MER1_type 140 164 -160 4 1212 613 306 84 58 chr11 82276922 82277196 -39566660 + B4 SINE B4 12 292 0 4 1212 459 0 0 0 chr11 82277218 82277269 -39566587 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1212 583 239 0 0 chr11 82277310 82277426 -39566430 + ID_B1 SINE B4 89 204 -20 4 1212 686 191 14 0 chr11 82277426 82277567 -39566289 - URR1B DNA MER1_type 0 225 83 4 1212 233 292 79 14 chr11 82277633 82277772 -39566084 + MER33 DNA MER1_type 124 271 -53 4 1212 234 278 14 27 chr11 82277825 82277899 -39565957 + Zaphod DNA Tip100 3594 3666 -365 4 1212 213 39 0 0 chr11 82278199 82278225 -39565631 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 4 1212 220 293 0 0 chr11 82278237 82278295 -39565561 - ID4_ SINE ID -21 62 5 4 1212 724 109 156 0 chr11 82278326 82278454 -39565402 - B1_Mur3 SINE Alu -1 148 1 4 1212 355 280 79 10 chr11 82278476 82278577 -39565279 - PB1D10 SINE Alu -8 109 2 4 1212 471 259 117 14 chr11 82278776 82278921 -39564935 + Zaphod DNA Tip100 3844 4003 -28 4 1212 907 279 28 28 chr11 82279122 82279376 -39564480 + MTE2b LTR MaLR 2 255 -124 4 1212 561 187 22 0 chr11 82279403 82279542 -39564314 + CT-rich Low_complexity Low_complexity 1 142 0 4 1212 274 220 0 0 chr11 82279551 82279601 -39564255 + MTE2b LTR MaLR 315 364 -15 4 1212 265 267 71 71 chr11 82279656 82279694 -39564162 - BC1_Mm scRNA scRNA -5 147 102 4 1212 517 236 19 0 chr11 82279694 82279800 -39564056 - PB1D7 SINE Alu -12 108 1 4 1212 392 254 18 18 chr11 82279800 82279902 -39563954 - ID4_ SINE ID -51 101 7 4 1212 208 304 0 89 chr11 82279978 82280079 -39563777 - L2b LINE L2 -55 3332 3206 4 1212 190 207 17 17 chr11 82280180 82280239 -39563617 + CT-rich Low_complexity Low_complexity 2 60 0 4 1212 522 0 0 0 chr11 82281753 82281811 -39562045 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1212 3582 18 2 0 chr11 82282148 82282543 -39561313 - MTA_Mm LTR MaLR 0 396 1 4 1212 587 146 3 86 chr11 82282682 82283019 -39560837 + GA-rich Low_complexity Low_complexity 1 308 0 4 1212 359 261 50 18 chr11 82283818 82283970 -39559886 + LTR37A LTR ERV1 287 433 -35 4 1212 1801 188 25 98 chr11 82284300 82284737 -39559119 + MTD LTR MaLR 1 405 -14 4 1212 232 358 50 14 chr11 82285244 82285383 -39558473 - MIRb SINE MIR -30 238 95 4 1212 203 287 106 42 chr11 82285690 82285832 -39558024 - MIR SINE MIR -102 160 10 4 1212 305 268 33 34 chr11 82288306 82288420 -39555436 + PB1D10 SINE Alu 14 131 -18 4 1212 949 251 118 40 chr11 82288420 82288794 -39555062 + Lx6 LINE L1 7052 7454 -6 4 1212 1383 252 47 3 chr11 82288874 82289193 -39554663 + MTE2a LTR MaLR 6 338 -41 4 1212 432 0 0 0 chr11 82291414 82291462 -39552394 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1212 180 0 0 0 chr11 82291912 82291932 -39551924 + (TCCCC)n Simple_repeat Simple_repeat 3 22 0 4 1212 220 231 70 93 chr11 82293619 82293705 -39550151 + L2 LINE L2 2864 2947 -472 4 1212 444 37 0 0 chr11 82294317 82294371 -39549485 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1212 450 0 0 0 chr11 82294371 82294420 -39549436 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1212 195 42 0 0 chr11 82295081 82295105 -39548751 + (CACCC)n Simple_repeat Simple_repeat 1 24 0 4 1212 423 0 0 0 chr11 82295105 82295151 -39548705 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1212 342 284 0 13 chr11 82295678 82295753 -39548103 + MER21B LTR ERV1 25 98 -765 4 1212 1269 269 13 97 chr11 82296457 82296553 -39547303 + MTEa LTR MaLR 22 117 -262 4 1212 1304 93 38 6 chr11 82296553 82296736 -39547120 - B2_Mm2 SINE B2 -6 189 1 4 1212 1269 269 13 97 chr11 82296736 82297030 -39546826 + MTEa LTR MaLR 118 379 0 4 1212 288 348 42 42 chr11 82297653 82297749 -39546107 + B4A SINE B4 197 292 0 4 1212 483 48 0 0 chr11 82297753 82297815 -39546041 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1212 387 300 22 51 chr11 82299357 82299494 -39544362 + MTEb LTR MaLR 1 133 -246 4 1212 1979 209 115 16 chr11 82299508 82299961 -39543895 + RLTR18B LTR ERVK 15 512 0 4 1212 396 59 0 0 chr11 82300225 82300276 -39543580 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1212 376 260 36 73 chr11 82300349 82300486 -39543370 + HAL1-3A_ME LINE L1 1975 2106 -752 4 1212 302 325 95 54 chr11 82300744 82300818 -39543038 + L3 LINE CR1 4256 4339 -150 4 1212 566 28 14 0 chr11 82300818 82300890 -39542966 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1212 302 325 95 54 chr11 82300890 82301036 -39542820 + L3 LINE CR1 4340 4484 -5 4 1212 224 392 41 18 chr11 82301770 82301939 -39541917 + L3 LINE CR1 4309 4481 -8 4 1212 185 217 13 80 chr11 82301940 82302015 -39541841 + MIR3 SINE MIR 2 71 -137 4 1212 229 307 89 22 chr11 82302024 82302114 -39541742 - Cheshire DNA MER1_type -1566 854 759 4 1212 1029 257 63 15 chr11 82302105 82302374 -39541482 + B4A SINE B4 11 292 0 4 1212 279 329 0 0 chr11 82302379 82302452 -39541404 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1212 2044 139 113 41 chr11 82302462 82302852 -39541004 + MTC LTR MaLR 1 418 -3 5 1212 1071 213 179 7 chr11 82302865 82303139 -39540717 + ORR1D2 LTR MaLR 11 331 -39 5 1212 745 114 18 0 chr11 82303129 82303227 -39540629 + B1_Mur3 SINE Alu 21 136 -13 5 1212 332 200 0 54 chr11 82303227 82303243 -39540613 + ORR1D2 LTR MaLR 297 312 -58 5 1212 423 0 0 0 chr11 82303243 82303290 -39540566 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 5 1212 332 200 0 54 chr11 82303290 82303347 -39540509 + ORR1D2 LTR MaLR 313 365 -5 5 1212 312 274 12 0 chr11 82303559 82303643 -39540213 + MIR SINE MIR 104 188 -74 4 1212 371 327 48 30 chr11 82303705 82303872 -39539984 + MLT1A0 LTR MaLR 13 182 -183 5 1212 637 226 0 16 chr11 82303880 82304006 -39539850 - RSINE1 SINE B4 -37 128 5 5 1212 212 222 37 0 chr11 82304746 82304800 -39539056 + MIRc SINE MIR 74 129 -139 5 1212 223 137 0 38 chr11 82304921 82304974 -39538882 + (TTTG)n Simple_repeat Simple_repeat 3 53 0 5 1212 249 290 36 91 chr11 82305644 82305754 -39538102 + PB1 SINE Alu 22 125 -2 5 1212 304 315 28 27 chr11 82305761 82305874 -39537982 + ID4 SINE ID 1 113 -39 5 1212 313 281 10 50 chr11 82306311 82306412 -39537444 + L1M5 LINE L1 3372 3468 -2678 5 1212 1090 331 95 40 chr11 82306628 82306961 -39536895 + L1M5 LINE L1 4114 4479 -1667 5 1212 496 89 21 53 chr11 82306961 82307056 -39536800 + Lx2 LINE L1 6906 6997 0 5 1212 1090 331 95 40 chr11 82307056 82307616 -39536240 + L1M5 LINE L1 4480 5056 -1090 5 1212 465 241 8 107 chr11 82307675 82307796 -39536060 + RSINE1 SINE B4 4 112 -53 5 1212 252 186 0 0 chr11 82307803 82307862 -39535994 + A-rich Low_complexity Low_complexity 1 59 0 5 1212 327 289 73 5 chr11 82308026 82308217 -39535639 + L1M5 LINE L1 5119 5322 -824 5 1212 214 143 48 0 chr11 82308363 82308405 -39535451 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1212 312 191 0 0 chr11 82310586 82310675 -39533181 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1212 639 183 17 0 chr11 82310689 82310864 -39532992 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1212 283 241 132 25 chr11 82310920 82311086 -39532770 + L1MA6 LINE L1 4076 4260 -1880 5 1212 601 228 35 35 chr11 82311133 82311274 -39532582 + B1F SINE Alu 9 149 0 5 1212 1552 302 126 28 chr11 82311275 82311704 -39532152 + L1MA6 LINE L1 4282 4799 -1347 5 1212 1118 126 141 5 chr11 82311704 82311903 -39531953 + URR1A DNA MER1_type 1 226 0 5 1212 1552 278 98 23 chr11 82311903 82313061 -39530795 + L1MA6 LINE L1 4800 6061 -113 5 1212 376 233 151 0 chr11 82313066 82313152 -39530704 + ID_B1 SINE B4 2 100 -124 5 151 475 239 124 62 chr11 82313192 82313451 -39530405 + B4 SINE B4 4 278 -14 5 1213 447 19 0 0 chr11 82313455 82313507 -39530349 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1213 296 200 122 43 chr11 82313558 82313673 -39530183 + L1MB4 LINE L1 6049 6172 -8 5 1213 332 394 68 27 chr11 82313870 82314092 -39529764 + L1MEc LINE L1 793 1023 -5286 5 1213 21 36 0 0 chr11 82314099 82314127 -39529729 + AT_rich Low_complexity Low_complexity 1 28 0 5 1213 313 294 111 7 chr11 82314232 82314376 -39529480 + L1MEc LINE L1 1159 1317 -4992 5 1213 372 341 48 27 chr11 82314589 82314776 -39529080 + L1MEc LINE L1 1625 1815 -4585 5 1213 1195 231 39 15 chr11 82314810 82315069 -39528787 - MTD LTR MaLR -154 265 1 5 1213 316 256 67 7 chr11 82315069 82315215 -39528641 - MTD-int LTR MaLR -716 1247 964 5 1213 2107 233 24 17 chr11 82315211 82315678 -39528178 - MTD-int LTR MaLR -788 470 1 5 1213 1637 32 0 0 chr11 82315699 82315884 -39527972 + L1Md_F2 LINE L1 5402 5586 -297 5 1213 8597 22 4 8 chr11 82315885 82316876 -39526980 + L1Md_F2 LINE L1 5588 6574 -8 5 1213 1770 224 9 3 chr11 82316883 82317199 -39526657 - MTD LTR MaLR -31 388 71 5 1213 1930 154 21 122 chr11 82317199 82317322 -39526534 - ORR1B1 LTR MaLR -2 392 271 5 1213 3165 58 8 2 chr11 82317322 82317720 -39526136 + MTB LTR MaLR 1 400 0 5 1213 6802 145 54 56 chr11 82317720 82319601 -39524255 - ORR1B1-int LTR MaLR -191 1772 8 5 1213 950 133 12 42 chr11 82319600 82319765 -39524091 - ORR1B1 LTR MaLR -199 195 36 5 1213 24 0 0 0 chr11 82319797 82319821 -39524035 + AT_rich Low_complexity Low_complexity 1 24 0 5 1213 4224 60 12 21 chr11 82320108 82320666 -39523190 - L1_Mus2 LINE L1 0 6566 6014 5 1213 319 158 70 0 chr11 82320691 82320748 -39523108 - ORR1B1 LTR MaLR -358 61 1 5 1213 294 95 0 0 chr11 82320788 82320830 -39523026 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1213 744 300 0 0 chr11 82321040 82321200 -39522656 + B3A SINE B2 1 160 -38 5 1213 471 18 0 0 chr11 82321205 82321261 -39522595 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1213 234 91 0 0 chr11 82321266 82321299 -39522557 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1213 27 0 0 0 chr11 82321299 82321326 -39522530 + AT_rich Low_complexity Low_complexity 1 27 0 5 1213 425 192 250 0 chr11 82321332 82321436 -39522420 + B1F SINE Alu 16 145 -4 5 1213 473 355 88 34 chr11 82321453 82321841 -39522015 - L2 LINE L2 -654 2765 2357 5 1213 207 0 0 0 chr11 82322694 82322717 -39521139 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1213 1225 41 7 0 chr11 82323196 82323342 -39520514 + B1_Mm SINE Alu 1 147 0 5 1213 217 51 51 0 chr11 82323342 82323381 -39520475 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 5 1213 228 81 14 101 chr11 82323668 82323737 -39520119 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 5 1213 3467 265 64 56 chr11 82323737 82324780 -39519076 - Lx8 LINE L1 -135 7338 6287 5 1213 2343 68 6 97 chr11 82324880 82325240 -39518616 - ORR1A2 LTR MaLR 0 327 1 5 1213 346 306 17 34 chr11 82325464 82325598 -39518258 - MIRc SINE MIR -89 179 45 5 1213 204 133 0 0 chr11 82325608 82325638 -39518218 + MIR SINE MIR 1 30 -232 5 1213 665 302 116 61 chr11 82325728 82326091 -39517765 - MER31B LTR ERV1 -83 383 1 5 1213 210 318 0 16 chr11 82326148 82326212 -39517644 + MIR SINE MIR 107 169 -93 5 1213 349 288 8 46 chr11 82329315 82329446 -39514410 + MLT1A1 LTR MaLR 2 127 -281 5 1213 649 257 40 7 chr11 82329570 82329719 -39514137 - RSINE1 SINE B4 -10 155 2 5 1213 276 111 0 0 chr11 82330938 82330983 -39512873 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1213 236 77 0 25 chr11 82330993 82331033 -39512823 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1213 454 294 14 14 chr11 82331451 82331589 -39512267 - B1F1 SINE Alu -9 140 3 5 1213 321 331 82 6 chr11 82332720 82332878 -39510978 + MIRb SINE MIR 77 246 -22 5 1213 201 295 11 149 chr11 82333460 82333635 -39510221 - MIRm SINE MIR -105 171 21 5 1213 218 250 99 12 chr11 82333730 82333811 -39510045 - MIR SINE MIR -77 185 98 5 1213 300 348 56 70 chr11 82333814 82334098 -39509758 - RMER12 LTR ERVK -278 1044 765 5 1213 475 273 11 43 chr11 82334098 82334330 -39509526 + (CATA)n Simple_repeat Simple_repeat 1 224 0 5 1213 22 0 0 0 chr11 82334767 82334789 -39509067 + AT_rich Low_complexity Low_complexity 1 22 0 5 1213 1063 244 113 31 chr11 82335343 82335698 -39508158 - MTD LTR MaLR 0 419 22 5 1213 935 165 0 9 chr11 82336047 82336273 -39507583 + CT-rich Low_complexity Low_complexity 1 224 0 5 1213 497 317 63 42 chr11 82337258 82337495 -39506361 + MIR SINE MIR 21 262 0 5 1213 1267 272 63 103 chr11 82338376 82338742 -39505114 + RMER5 LTR ERV1 16 384 -150 5 1213 701 240 5 71 chr11 82338742 82338953 -39504903 + B3A SINE B2 2 198 0 5 1213 1267 272 63 103 chr11 82338953 82339022 -39504834 + RMER5 LTR ERV1 385 432 -102 5 1213 2482 165 90 46 chr11 82339022 82339524 -39504332 + RLTR28 LTR ERVL 1 524 0 5 1213 1267 272 63 103 chr11 82339524 82339611 -39504245 + RMER5 LTR ERV1 433 518 -16 5 1213 1019 78 4 21 chr11 82339969 82340205 -39503651 + (CA)n Simple_repeat Simple_repeat 1 232 0 5 1213 268 264 108 69 chr11 82340514 82340644 -39503212 - MIRb SINE MIR -63 205 71 5 1213 883 182 17 0 chr11 82342665 82342841 -39501015 + L1MA7 LINE L1 6111 6289 -2 5 1213 27 29 0 0 chr11 82343020 82343054 -39500802 + AT_rich Low_complexity Low_complexity 1 34 0 5 1213 2322 205 89 20 chr11 82343069 82343607 -39500249 - RMER15 LTR ERVL 0 575 1 5 1213 31 0 0 0 chr11 82343627 82343658 -39500198 + AT_rich Low_complexity Low_complexity 1 31 0 5 1213 982 263 5 5 chr11 82343660 82343870 -39499986 + ID_B1 SINE B4 2 211 -13 5 1213 200 303 0 43 chr11 82344660 82344729 -39499127 - MIRm SINE MIR 0 276 211 5 1213 552 42 0 0 chr11 82345333 82345404 -39498452 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1213 1263 256 3 21 chr11 82345405 82345688 -39498168 - B4 SINE B4 -10 282 5 5 1213 243 0 0 0 chr11 82346051 82346078 -39497778 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1213 271 376 131 14 chr11 82346575 82346796 -39497060 - MIRb SINE MIR -15 253 7 5 1213 195 364 65 0 chr11 82347267 82347344 -39496512 - MIRb SINE MIR -186 82 1 5 1213 1105 283 77 38 chr11 82348068 82348421 -39495435 + MTD LTR MaLR 1 379 0 5 1213 297 0 0 0 chr11 82349286 82349319 -39494537 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1213 387 0 0 0 chr11 82349319 82349361 -39494495 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1213 935 163 217 0 chr11 82349990 82350156 -39493700 + B3 SINE B2 3 204 -12 5 1213 2546 137 211 2 chr11 82350157 82350641 -39493215 + RMER4B LTR ERVK 1 585 0 5 1213 25 31 0 0 chr11 82350645 82350677 -39493179 + AT_rich Low_complexity Low_complexity 1 32 0 5 1213 295 317 98 52 chr11 82351017 82351170 -39492686 - MER121 Unknown Unknown -116 296 137 5 1213 811 244 64 69 chr11 82351407 82351640 -39492216 + B4 SINE B4 1 232 -60 5 1213 225 175 0 24 chr11 82351641 82351682 -39492174 + G-rich Low_complexity Low_complexity 1 40 0 5 1213 288 241 0 0 chr11 82351685 82351743 -39492113 + B4 SINE B4 231 288 -4 5 1213 329 274 46 19 chr11 82354057 82354165 -39489691 + MIR SINE MIR 81 191 -71 5 1213 241 261 242 73 chr11 82354875 82355164 -39488692 + MLT1J LTR MaLR 3 340 -172 5 1213 233 235 0 19 chr11 82355215 82355267 -39488589 + MLT1J LTR MaLR 424 474 -38 5 1213 232 246 0 0 chr11 82355359 82355420 -39488436 + tRNA-Ala-GCA tRNA tRNA 1 61 -14 5 1213 476 180 0 63 chr11 82355818 82355913 -39487943 + ID_B1 SINE B4 123 211 -13 5 1213 324 0 0 0 chr11 82355913 82355949 -39487907 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1213 261 349 77 64 chr11 82356121 82356277 -39487579 + MLT1N2 LTR MaLR 1 158 -404 5 1213 204 219 75 45 chr11 82357889 82357956 -39485900 - MIRm SINE MIR -8 268 200 5 1213 313 322 45 37 chr11 82358225 82358374 -39485482 - MLT1B LTR MaLR -92 316 172 5 1213 1299 74 0 0 chr11 82358374 82358550 -39485306 + (GGGAGA)n Simple_repeat Simple_repeat 1 176 0 5 1213 277 283 108 44 chr11 82358550 82358716 -39485140 - MLT1B LTR MaLR -237 171 8 5 1213 1153 171 4 22 chr11 82358930 82359157 -39484699 + URR1B DNA MER1_type 1 223 -2 5 1213 194 111 54 27 chr11 82359494 82359531 -39484325 + L3 LINE CR1 889 926 -3563 5 1213 247 315 143 71 chr11 82359844 82359998 -39483858 + MLT1K LTR MaLR 106 270 -325 5 1213 1053 201 64 25 chr11 82360187 82360391 -39483465 - B3 SINE B2 -4 212 1 6 1213 25 31 0 0 chr11 82360395 82360427 -39483429 + AT_rich Low_complexity Low_complexity 1 32 0 6 1213 281 233 0 48 chr11 82360432 82360495 -39483361 + RMER15 LTR ERVL 1 60 -515 6 1213 2608 173 88 18 chr11 82360571 82361084 -39482772 + RMER15 LTR ERVL 27 575 0 6 1213 414 0 0 0 chr11 82361084 82361130 -39482726 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1213 638 209 96 7 chr11 82361130 82361265 -39482591 - B3A SINE B2 -51 147 1 6 1213 228 323 71 24 chr11 82362332 82362459 -39481397 - MIRb SINE MIR -126 142 10 6 1213 202 190 16 49 chr11 82363124 82363185 -39480671 + CT-rich Low_complexity Low_complexity 1 59 0 6 1213 586 289 0 0 chr11 82363441 82363576 -39480280 + MTEa LTR MaLR 27 161 -218 6 1213 781 76 101 50 chr11 82363576 82363715 -39480141 - URR1A DNA MER1_type 0 226 81 6 1213 730 234 48 16 chr11 82363777 82363964 -39479892 + MTEa LTR MaLR 172 364 -15 6 1213 739 247 75 58 chr11 82364634 82364923 -39478933 + RLTR20D LTR ERVK 10 479 -99 6 1213 297 0 0 0 chr11 82364923 82364956 -39478900 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1213 537 16 0 0 chr11 82364956 82365017 -39478839 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1213 826 224 74 10 chr11 82365200 82365403 -39478453 - B3 SINE B2 0 216 1 6 1213 488 289 77 49 chr11 82365488 82365812 -39478044 - L1ME1 LINE L1 -179 6000 5668 6 1213 873 266 78 10 chr11 82365857 82366258 -39477598 - L1ME1 LINE L1 -621 5558 5133 6 1213 2745 130 80 34 chr11 82366295 82366327 -39477529 - RLTR28 LTR ERVL 0 524 500 6 1213 2311 96 81 55 chr11 82366327 82366378 -39477478 - ORR1B1 LTR MaLR 0 394 353 6 1213 1679 16 21 0 chr11 82366378 82366566 -39477290 - B2_Mm1t SINE B2 -1 192 1 6 1213 2311 96 81 55 chr11 82366566 82366898 -39476958 - ORR1B1 LTR MaLR -42 352 1 6 1213 2745 130 80 34 chr11 82366898 82367366 -39476490 - RLTR28 LTR ERVL -25 499 1 6 1213 1803 276 116 73 chr11 82367379 82368772 -39475084 - L1MEf LINE L1 -1101 5443 3991 6 1213 376 186 124 110 chr11 82369136 82369281 -39474575 - ORR1D1 LTR MaLR -227 147 1 6 1213 318 267 48 77 chr11 82369476 82369748 -39474108 - L1MEf LINE L1 -4092 2548 2285 6 1213 291 282 23 12 chr11 82369764 82369850 -39474006 - MTEb LTR MaLR -13 366 280 6 1213 538 212 26 48 chr11 82370101 82370227 -39473629 + MTD LTR MaLR 1 120 -299 6 1213 7927 53 7 1 chr11 82370227 82371649 -39472207 - L1Md_F2 LINE L1 -2 6580 5145 6 1213 1498 199 25 32 chr11 82371649 82371965 -39471891 + MTD LTR MaLR 105 418 -1 6 1213 1142 307 119 27 chr11 82372349 82373206 -39470650 - L1MEf LINE L1 -4465 2175 1240 6 1213 836 140 121 6 chr11 82373222 82373387 -39470469 + B2_Mm2 SINE B2 1 184 -11 6 1213 216 167 0 0 chr11 82373391 82373439 -39470417 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1213 708 236 30 60 chr11 82373442 82373609 -39470247 - RSINE1 SINE B4 0 165 4 6 1213 844 174 20 14 chr11 82373628 82373774 -39470082 - B1_Mus2 SINE Alu 0 147 1 6 1213 677 288 93 14 chr11 82373775 82374183 -39469673 - L1MEf LINE L1 -5393 1247 800 6 1213 296 315 0 0 chr11 82374374 82374463 -39469393 - L1MEf LINE L1 -6438 109 21 6 1213 207 0 0 0 chr11 82374588 82374611 -39469245 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1213 414 346 95 5 chr11 82374681 82374870 -39468986 - MIR SINE MIR -27 235 30 6 1213 1881 229 11 3 chr11 82375176 82375544 -39468312 - MTD LTR MaLR -1 418 48 6 1213 467 319 96 40 chr11 82375687 82375949 -39467907 - MLT1A0 LTR MaLR -17 348 63 6 1213 192 40 0 0 chr11 82375949 82375974 -39467882 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1213 467 319 96 40 chr11 82375974 82376034 -39467822 - MLT1A0 LTR MaLR -303 62 9 6 1213 2403 117 76 5 chr11 82376536 82376904 -39466952 + ORR1B1 LTR MaLR 1 394 0 6 1213 958 166 209 0 chr11 82377002 82377189 -39466667 + URR1A DNA MER1_type 1 226 0 6 1213 256 253 112 12 chr11 82377198 82377278 -39466578 - MER91A DNA Tip100 -105 91 4 6 1213 195 326 25 87 chr11 82377839 82378000 -39465856 - MIRb SINE MIR -22 246 96 6 1213 318 50 0 0 chr11 82378475 82378515 -39465341 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1213 271 245 48 10 chr11 82379454 82379557 -39464299 - L1ME3B LINE L1 -8 6232 6126 6 1213 307 281 116 10 chr11 82381502 82381654 -39462202 - MIR3 SINE MIR -6 202 34 6 1213 236 322 136 7 chr11 82382210 82382357 -39461499 + MIRb SINE MIR 47 212 -56 6 1213 308 239 173 81 chr11 82383622 82383881 -39459975 - ORR1E LTR MaLR -85 285 7 6 1213 262 263 26 0 chr11 82383889 82383965 -39459891 - MIRc SINE MIR -181 87 10 6 1213 944 62 8 0 chr11 82384943 82385071 -39458785 + (GGGAGA)n Simple_repeat Simple_repeat 5 133 0 6 1213 929 221 26 18 chr11 82385363 82385609 -39458247 + MamRep4096 DNA hAT? 39 286 -140 6 1213 183 42 0 0 chr11 82385609 82385633 -39458223 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1213 929 221 26 18 chr11 82385633 82385658 -39458198 + MamRep4096 DNA hAT? 287 311 -115 6 1213 226 267 60 137 chr11 82386765 82386882 -39456974 - LTR16A LTR ERVL -262 189 82 6 1213 313 190 0 0 chr11 82387038 82387096 -39456760 + MIR SINE MIR 111 168 -94 6 1213 434 299 34 0 chr11 82387344 82387461 -39456395 + MER20 DNA MER1_type 8 128 -91 6 1213 184 159 0 64 chr11 82387480 82387527 -39456329 - L4 LINE RTE -1343 686 643 6 1213 532 239 71 21 chr11 82387737 82387878 -39455978 + B1_Mur2 SINE Alu 1 148 -1 6 1213 1195 330 71 30 chr11 82388111 82388702 -39455154 - MER20B DNA MER1_type -2 781 167 6 1213 215 269 104 48 chr11 82390784 82390909 -39452947 - MIRm SINE MIR -114 162 31 6 1213 408 311 116 9 chr11 82390978 82391202 -39452654 + L3 LINE CR1 4143 4390 -99 6 1213 373 274 15 59 chr11 82392711 82392847 -39451009 - MIR SINE MIR -98 164 35 6 1213 438 20 0 0 chr11 82392906 82392957 -39450899 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1213 1105 68 7 0 chr11 82392959 82393106 -39450750 - B1_Mus1 SINE Alu 0 148 1 6 1213 266 314 0 0 chr11 82394420 82394490 -39449366 + L2b LINE L2 3303 3372 -3 6 1213 431 304 140 5 chr11 82394611 82394811 -39449045 - MIR SINE MIR -17 251 22 6 1213 559 270 26 16 chr11 82394830 82395022 -39448834 - MER33 DNA MER1_type -27 297 104 6 1213 3548 11 119 14 chr11 82395249 82395695 -39448161 + MT2_Mm LTR ERVL 1 493 0 6 1213 381 246 0 0 chr11 82397651 82397769 -39446087 + (CA)n Simple_repeat Simple_repeat 2 119 0 6 1213 285 29 0 0 chr11 82398347 82398381 -39445475 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1213 1166 48 7 0 chr11 82398470 82398616 -39445240 + B1_Mus1 SINE Alu 2 148 0 6 1213 294 194 0 0 chr11 82398634 82398696 -39445160 + CT-rich Low_complexity Low_complexity 1 62 0 6 1213 255 257 162 0 chr11 82399900 82399974 -39443882 + B1F SINE Alu 1 86 -63 6 1213 1047 170 92 0 chr11 82400494 82400700 -39443156 - URR1B DNA MER1_type 0 225 1 6 1213 499 339 26 31 chr11 82401555 82401747 -39442109 - MIRb SINE MIR -37 231 41 6 1213 358 355 24 0 chr11 82401926 82402050 -39441806 + B4 SINE B4 6 132 -160 6 1213 381 93 0 0 chr11 82402062 82402116 -39441740 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1213 403 281 48 24 chr11 82402221 82402345 -39441511 - MIR3 SINE MIR -11 197 71 6 1213 576 0 0 0 chr11 82403211 82403275 -39440581 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1213 1952 108 11 63 chr11 82404191 82404538 -39439318 + ORR1A4 LTR MaLR 1 329 0 6 1213 914 270 43 107 chr11 82406228 82406527 -39437329 - MTEa LTR MaLR -14 365 86 6 1213 515 288 0 0 chr11 82406835 82406953 -39436903 + RSINE1 SINE B4 26 143 -22 6 1213 970 223 48 0 chr11 82407027 82407233 -39436623 - B3 SINE B2 0 216 1 6 1213 10508 75 8 2 chr11 82407382 82409573 -39434283 - L1_Mus2 LINE L1 0 6566 4362 6 1213 800 93 0 0 chr11 82409574 82409681 -39434175 - U6 snRNA snRNA 0 107 1 6 1213 1157 68 0 0 chr11 82409695 82409842 -39434014 - B1_Mus2 SINE Alu 0 147 1 6 1213 989 256 47 25 chr11 82411008 82411284 -39432572 + B4 SINE B4 11 292 0 6 1213 1019 276 22 22 chr11 82412071 82412342 -39431514 - B4 SINE B4 -13 279 9 6 1213 269 239 56 0 chr11 82414054 82414125 -39429731 + PB1D7 SINE Alu 38 112 -8 6 1213 330 26 0 0 chr11 82415093 82415132 -39428724 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1213 292 305 90 79 chr11 82415881 82416059 -39427797 + MLT1J2 LTR MaLR 45 224 -224 6 1213 337 278 0 0 chr11 82416204 82416276 -39427580 - ID4 SINE ID 0 83 12 6 1213 767 278 47 23 chr11 82417120 82417334 -39426522 + ID_B1 SINE B4 2 220 -4 6 1213 220 246 27 14 chr11 82417929 82418003 -39425853 - MER5A DNA MER1_type -27 162 88 6 1213 396 0 0 0 chr11 82418496 82418540 -39425316 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1213 349 247 26 18 chr11 82418974 82419085 -39424771 + PB1D10 SINE Alu 1 144 -3 6 1213 2407 236 97 47 chr11 82419493 82420289 -39423567 + RMER13A LTR ERVK 2 837 -23 6 1213 714 246 32 32 chr11 82421029 82421247 -39422609 + L2a LINE L2 3190 3407 -19 6 1213 230 232 0 0 chr11 82422018 82422074 -39421782 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1213 538 191 11 11 chr11 82422075 82422250 -39421606 + (TATG)n Simple_repeat Simple_repeat 4 178 0 6 1213 510 197 0 0 chr11 82422283 82422430 -39421426 + (TG)n Simple_repeat Simple_repeat 2 148 0 6 1213 305 164 30 0 chr11 82422549 82422616 -39421240 + CT-rich Low_complexity Low_complexity 2 70 0 6 1213 394 312 142 17 chr11 82425458 82425634 -39418222 - MER20 DNA MER1_type -14 205 8 6 1213 614 299 0 6 chr11 82426324 82426489 -39417367 + RSINE1 SINE B4 2 165 0 6 1213 302 322 70 57 chr11 82427081 82427239 -39416617 + MLT1G1 LTR MaLR 48 207 -372 6 1213 534 223 0 9 chr11 82427671 82427784 -39416072 - RSINE1 SINE B4 -46 119 8 6 1213 181 287 121 50 chr11 82427789 82427888 -39415968 - MIRb SINE MIR -65 203 98 6 1213 1432 234 31 40 chr11 82429118 82429539 -39414317 + MTE2a LTR MaLR 1 404 -15 6 1213 250 355 24 8 chr11 82429538 82429663 -39414193 + MLT1A1 LTR MaLR 52 178 -230 6 1213 216 0 0 0 chr11 82429799 82429823 -39414033 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1213 820 193 0 20 chr11 82429865 82430018 -39413838 - B1_Mur4 SINE Alu 0 150 1 7 1213 313 338 62 74 chr11 82431343 82431586 -39412270 + L1M4c LINE L1 941 1180 -5204 7 1213 710 166 11 33 chr11 82432368 82432549 -39411307 + C-rich Low_complexity Low_complexity 2 178 0 7 1213 1029 101 135 6 chr11 82432573 82432743 -39411113 + B2_Mm2 SINE B2 3 194 -1 7 1213 237 132 0 0 chr11 82432743 82432781 -39411075 + (GGA)n Simple_repeat Simple_repeat 2 39 0 7 1213 495 235 125 26 chr11 82433003 82433195 -39410661 + B3 SINE B2 1 211 -5 7 1213 383 273 24 16 chr11 82434107 82434230 -39409626 - MIRb SINE MIR -73 195 72 7 1213 665 189 38 32 chr11 82434564 82434722 -39409134 - RSINE1 SINE B4 0 165 7 7 1213 950 217 14 14 chr11 82434933 82435148 -39408708 + B3 SINE B2 1 215 -1 7 1213 830 139 0 0 chr11 82435183 82435312 -39408544 - B2_Mm2 SINE B2 -66 129 1 7 1213 492 81 0 0 chr11 82436230 82436304 -39407552 + (TC)n Simple_repeat Simple_repeat 2 75 0 7 1213 975 120 19 5 chr11 82436868 82437297 -39406559 + (TGGA)n Simple_repeat Simple_repeat 1 435 0 7 1213 269 265 137 0 chr11 82437348 82437450 -39406406 - PB1D10 SINE Alu -1 116 1 7 1213 343 353 62 68 chr11 82438284 82438637 -39405219 + MLT1J LTR MaLR 111 461 -51 7 1213 204 362 0 78 chr11 82438748 82438850 -39405006 + MIR3 SINE MIR 85 178 -30 7 1213 333 278 9 27 chr11 82439656 82439767 -39404089 + PB1D10 SINE Alu 1 109 -8 7 1213 237 224 45 0 chr11 82439784 82439851 -39404005 + ID4 SINE ID 4 73 -10 7 1213 306 0 0 0 chr11 82439869 82439903 -39403953 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 7 1213 257 361 16 40 chr11 82439918 82440042 -39403814 - MIR SINE MIR -55 153 33 7 1213 226 236 0 18 chr11 82441231 82441287 -39402569 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1213 625 314 65 103 chr11 82442196 82442343 -39401513 + MLT1F LTR MaLR 194 345 -203 7 1213 1937 139 6 58 chr11 82442343 82442686 -39401170 + ORR1A3 LTR MaLR 2 326 0 7 1213 625 314 65 103 chr11 82442686 82442907 -39400949 + MLT1F LTR MaLR 346 548 0 7 1213 493 354 98 18 chr11 82442907 82443187 -39400669 - MER74A LTR ERVL -14 544 242 7 1213 236 337 11 11 chr11 82443239 82443329 -39400527 - MER74A LTR ERVL -454 168 79 7 1213 533 265 128 125 chr11 82443345 82443673 -39400183 + MTEa LTR MaLR 10 338 -41 7 151 436 321 122 32 chr11 82444092 82444404 -39399452 + L2b LINE L2 3036 3375 0 7 1214 557 146 0 19 chr11 82444486 82444591 -39399265 + (CACCAT)n Simple_repeat Simple_repeat 6 108 0 7 1214 203 238 0 0 chr11 82444825 82444867 -39398989 + C-rich Low_complexity Low_complexity 1 42 0 7 1214 573 141 0 0 chr11 82445324 82445423 -39398433 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1214 197 330 114 0 chr11 82445649 82445737 -39398119 - MIR SINE MIR -50 212 115 7 1214 572 353 93 21 chr11 82446023 82446312 -39397544 - MLT1J LTR MaLR -122 390 81 7 1214 455 148 12 12 chr11 82446642 82446724 -39397132 - ORR1E LTR MaLR 0 379 298 7 1214 1045 223 99 47 chr11 82446729 82447140 -39396716 + BGLII_B LTR ERVK 1 442 -250 7 1214 1085 215 25 50 chr11 82447206 82447517 -39396339 - ORR1E LTR MaLR -55 319 1 7 1214 208 226 209 23 chr11 82447602 82447688 -39396168 - L2b LINE L2 -21 3354 3253 7 1214 275 300 106 24 chr11 82448051 82448174 -39395682 + MIR SINE MIR 21 153 -109 7 1214 1010 294 21 3 chr11 82448180 82448463 -39395393 + B4A SINE B4 1 288 -4 7 1214 724 323 141 17 chr11 82448752 82449171 -39394685 - Charlie4a DNA MER1_type -13 495 25 7 1214 509 315 5 38 chr11 82449215 82449400 -39394456 + ID_B1 SINE B4 44 222 -2 7 1214 346 137 39 52 chr11 82449449 82449526 -39394330 - URR1B DNA MER1_type 0 225 150 7 1214 741 120 199 19 chr11 82449526 82449687 -39394169 - URR1B DNA MER1_type -33 192 3 7 1214 262 294 132 75 chr11 82449687 82449758 -39394098 + CYRA11_Mm Unknown Y-chromosome 369 452 -165 7 1214 287 281 0 0 chr11 82449790 82449854 -39394002 + ID4_ SINE ID 20 83 0 7 1214 273 315 56 0 chr11 82450755 82450844 -39393012 + MLT1J LTR MaLR 105 198 -314 7 1214 233 57 29 0 chr11 82451430 82451465 -39392391 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 7 1214 378 0 0 0 chr11 82452060 82452102 -39391754 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 7 1214 255 316 36 50 chr11 82453507 82453647 -39390209 - ORR1E LTR MaLR -209 150 13 7 1214 368 304 16 41 chr11 82454470 82454618 -39389238 - MIRc SINE MIR -74 194 44 7 1214 342 0 0 0 chr11 82455057 82455095 -39388761 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1214 310 216 0 98 chr11 82455095 82455169 -39388687 - B1_Mur1 SINE Alu -28 121 55 7 1214 542 217 9 0 chr11 82455171 82455286 -39388570 - B3 SINE B2 -100 116 1 7 1214 652 217 147 12 chr11 82455781 82455944 -39387912 - B3 SINE B2 -30 186 2 7 1214 1096 106 71 11 chr11 82455950 82456132 -39387724 - B2_Mm2 SINE B2 -1 194 2 7 1214 1184 48 0 0 chr11 82456164 82456309 -39387547 - B1_Mus2 SINE Alu -1 146 2 7 1214 189 240 162 62 chr11 82456657 82456710 -39387146 - MIRb SINE MIR -111 157 93 7 1214 1179 165 62 179 chr11 82456710 82456879 -39386977 + ORR1D1 LTR MaLR 1 165 -209 7 1214 255 61 0 0 chr11 82456879 82456912 -39386944 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 7 1214 1179 165 62 179 chr11 82456912 82457162 -39386694 + ORR1D1 LTR MaLR 166 371 -3 7 1214 189 240 162 62 chr11 82457162 82457188 -39386668 - MIRb SINE MIR -176 92 70 7 1214 243 0 0 0 chr11 82457953 82457980 -39385876 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1214 210 294 0 34 chr11 82458086 82458174 -39385682 + G-rich Low_complexity Low_complexity 3 87 0 7 1214 294 337 0 23 chr11 82458796 82458884 -39384972 + L3 LINE CR1 4298 4383 -106 7 1214 268 338 76 72 chr11 82460035 82460297 -39383559 + LTR33 LTR ERVL 253 515 0 7 1214 388 290 61 68 chr11 82460398 82460676 -39383180 + B4 SINE B4 3 278 -14 7 1214 277 202 33 11 chr11 82460698 82460788 -39383068 + CT-rich Low_complexity Low_complexity 2 93 0 7 1214 405 39 0 0 chr11 82460788 82460839 -39383017 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1214 287 203 108 0 chr11 82461411 82461485 -39382371 - ID2 SINE ID 0 83 2 7 1214 279 226 186 25 chr11 82461490 82461608 -39382248 - B1F1 SINE Alu -11 138 2 7 1214 1142 264 163 45 chr11 82461667 82462245 -39381611 + RMER13A LTR ERVK 1 646 -214 7 1214 1090 195 4 52 chr11 82462694 82462926 -39380930 - RLTR41 LTR ERV1 -4 442 222 7 1214 209 266 48 22 chr11 82464549 82464665 -39379191 + MIRc SINE MIR 13 130 -132 7 1214 321 328 29 15 chr11 82465114 82465250 -39378606 - MIRc SINE MIR -109 159 22 7 1214 387 217 0 12 chr11 82466394 82466478 -39377378 - PB1D9 SINE Alu -6 114 32 7 1214 221 94 0 0 chr11 82466490 82466522 -39377334 - B1_Mus1 SINE Alu -84 64 33 7 1214 371 309 36 91 chr11 82466865 82466926 -39376930 + B4 SINE B4 40 190 -102 7 1214 798 187 8 0 chr11 82466926 82467060 -39376796 + B1_Mur2 SINE Alu 13 147 -2 7 1214 371 309 36 91 chr11 82467060 82467080 -39376776 + B4 SINE B4 191 245 -47 7 1214 572 0 15 0 chr11 82467100 82467168 -39376688 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 7 1214 432 37 0 0 chr11 82467753 82467807 -39376049 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1214 320 0 0 24 chr11 82468548 82468589 -39375267 + (GTGTG)n Simple_repeat Simple_repeat 1 40 0 7 1214 741 241 0 0 chr11 82468922 82469067 -39374789 - RSINE1 SINE B4 -18 147 3 7 1214 830 231 47 19 chr11 82469091 82469303 -39374553 - ID_B1 SINE B4 -6 218 1 7 1214 430 275 16 48 chr11 82469371 82469558 -39374298 - HAL1 LINE L1 -102 2405 2225 7 1214 258 32 0 0 chr11 82469660 82469691 -39374165 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 7 1214 492 207 8 49 chr11 82469954 82470076 -39373780 - PB1D10 SINE Alu 0 117 1 7 1214 227 140 40 0 chr11 82470108 82470158 -39373698 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1214 596 272 51 75 chr11 82470168 82470462 -39373394 - B4 SINE B4 -5 287 1 7 1214 443 292 208 6 chr11 82470623 82470960 -39372896 - HAL1 LINE L1 -753 1754 1350 7 1214 338 386 43 16 chr11 82471118 82471305 -39372551 - L1ME3A LINE L1 -231 5942 5751 7 1214 268 336 9 0 chr11 82471332 82471442 -39372414 - L1ME3A LINE L1 -463 5699 5589 7 1214 391 247 21 0 chr11 82471449 82471546 -39372310 + MTE2a LTR MaLR 1 99 -280 7 1214 1219 265 16 31 chr11 82472346 82472669 -39371187 + MTE2a LTR MaLR 62 379 0 7 1214 2140 258 22 31 chr11 82472861 82473442 -39370414 - Lx8 LINE L1 -330 7143 6568 7 1214 406 321 73 13 chr11 82473501 82473801 -39370055 - L1ME3A LINE L1 -914 5232 4915 7 1214 543 74 0 0 chr11 82473927 82474008 -39369848 + (TC)n Simple_repeat Simple_repeat 1 81 0 7 1214 430 343 45 17 chr11 82474446 82474624 -39369232 - LTR16A LTR ERVL -171 280 98 7 1214 2330 106 23 25 chr11 82474893 82475289 -39368567 + RMER10B LTR ERVL 4 398 0 7 1214 305 281 97 0 chr11 82475397 82475511 -39368345 - B3 SINE B2 -5 211 87 7 1214 25 31 0 0 chr11 82475540 82475572 -39368284 + AT_rich Low_complexity Low_complexity 1 32 0 7 1214 476 323 97 40 chr11 82476071 82476258 -39367598 - RMER2 LTR ERV1 0 567 370 7 1214 396 0 0 0 chr11 82476258 82476302 -39367554 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1214 476 323 97 40 chr11 82476302 82476443 -39367413 - RMER2 LTR ERV1 -198 369 220 7 1214 1326 316 43 35 chr11 82476783 82477363 -39366493 - L1MB8 LINE L1 -6 6172 5588 7 1214 805 225 99 0 chr11 82477365 82477556 -39366300 - B3 SINE B2 -2 214 5 7 1214 483 188 0 38 chr11 82477570 82477675 -39366181 - PB1D10 SINE Alu 0 117 17 7 1214 230 263 132 0 chr11 82477612 82477688 -39366168 - B4A SINE B4 -125 167 82 7 1214 583 265 79 18 chr11 82477699 82477926 -39365930 - L1MB8 LINE L1 -596 5582 5342 7 1214 2619 169 31 45 chr11 82477926 82478478 -39365378 + RLTR26 LTR ERVK 1 544 -98 7 1214 604 228 25 25 chr11 82478457 82478619 -39365237 + RLTR26 LTR ERVK 481 642 0 7 1214 416 202 48 39 chr11 82478817 82478920 -39364936 - PB1D10 SINE Alu 0 117 14 7 1214 319 151 27 27 chr11 82478938 82479013 -39364843 - L1MB8 LINE L1 -955 5191 5117 7 1214 186 236 17 52 chr11 82479080 82479138 -39364718 - MIRb SINE MIR -182 86 31 7 1214 21 0 0 0 chr11 82479970 82479991 -39363865 + AT_rich Low_complexity Low_complexity 1 21 0 7 1214 22 0 0 0 chr11 82480079 82480101 -39363755 + AT_rich Low_complexity Low_complexity 1 22 0 8 1214 305 297 170 25 chr11 82480492 82480692 -39363164 + L2 LINE L2 2786 3014 -405 8 1214 321 365 104 54 chr11 82480985 82481301 -39362555 + LTR16A LTR ERVL 34 365 -86 8 1214 436 296 128 34 chr11 82481590 82481918 -39361938 + ORR1E LTR MaLR 1 359 0 8 1214 246 259 24 24 chr11 82482533 82482616 -39361240 + GA-rich Low_complexity Low_complexity 3 85 0 8 1214 310 292 56 0 chr11 82482772 82482861 -39360995 + PB1D10 SINE Alu 6 99 -18 8 1214 277 315 0 14 chr11 82482862 82482936 -39360920 + polypurine Low_complexity Low_complexity 4 76 0 8 1214 209 378 0 0 chr11 82483641 82483715 -39360141 - MIRc SINE MIR -133 135 62 8 1214 714 298 55 8 chr11 82484100 82484354 -39359502 - B4A SINE B4 -2 290 25 8 1214 456 278 0 0 chr11 82485938 82486046 -39357810 + ID_B1 SINE B4 116 223 -1 8 1214 234 254 28 14 chr11 82486047 82486119 -39357737 + L1MEf LINE L1 577 649 -5551 8 1214 1036 85 0 0 chr11 82486171 82486312 -39357544 + B1_Mm SINE Alu 1 141 -6 8 1214 654 49 0 0 chr11 82486314 82486396 -39357460 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 8 1214 240 359 63 23 chr11 82486500 82486674 -39357182 + MIRc SINE MIR 43 223 -45 8 1214 855 132 15 0 chr11 82486769 82486905 -39356951 + B1_Mus2 SINE Alu 5 142 -5 8 1214 233 296 48 48 chr11 82487109 82487212 -39356644 - MER34 LTR ERV1 -65 477 375 8 1214 221 262 0 16 chr11 82487950 82488012 -39355844 - MIR SINE MIR -62 146 86 8 1214 315 0 0 0 chr11 82488236 82488271 -39355585 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1214 462 36 0 0 chr11 82488271 82488326 -39355530 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1214 698 237 36 36 chr11 82489079 82489298 -39354558 + ID_B1 SINE B4 2 220 -4 8 1214 333 0 0 0 chr11 82490164 82490201 -39353655 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1214 416 279 36 22 chr11 82490357 82490496 -39353360 + B1F SINE Alu 1 141 -8 8 1214 462 18 0 0 chr11 82490581 82490636 -39353220 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1214 288 70 0 0 chr11 82490801 82490844 -39353012 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 8 1214 1182 34 7 0 chr11 82490844 82490990 -39352866 - B1_Mus1 SINE Alu 0 148 2 8 1214 235 340 82 0 chr11 82491241 82491338 -39352518 + MIRb SINE MIR 108 212 -56 8 1214 285 240 137 20 chr11 82491360 82491462 -39352394 + B1F1 SINE Alu 1 114 -35 8 1214 513 47 0 0 chr11 82491468 82491532 -39352324 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 1214 823 139 41 7 chr11 82491536 82491681 -39352175 + B1_Mur4 SINE Alu 1 150 0 8 1214 2240 139 66 2 chr11 82491764 82492159 -39351697 - MTC LTR MaLR 0 421 2 8 1214 237 368 92 0 chr11 82493162 82493314 -39350542 + MIR SINE MIR 60 225 -37 8 1214 243 0 0 0 chr11 82493958 82493985 -39349871 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1214 486 204 0 0 chr11 82494533 82494646 -39349210 + (CA)n Simple_repeat Simple_repeat 2 114 0 8 1214 288 0 0 0 chr11 82495445 82495477 -39348379 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1214 437 321 11 10 chr11 82495782 82495959 -39347897 - MIRb SINE MIR -4 258 81 8 1214 182 235 19 19 chr11 82496384 82496488 -39347368 + GA-rich Low_complexity Low_complexity 1 104 0 8 1214 341 294 57 29 chr11 82496617 82496722 -39347134 + PB1D10 SINE Alu 3 110 -7 8 1214 803 218 89 11 chr11 82496724 82496914 -39346942 + B3 SINE B2 5 209 -7 8 1214 307 274 59 12 chr11 82497172 82497257 -39346599 - MIR SINE MIR -80 182 94 8 1214 237 65 0 0 chr11 82498339 82498370 -39345486 + (CACAG)n Simple_repeat Simple_repeat 5 35 0 8 1214 463 315 61 92 chr11 82498687 82498949 -39344907 - B4 SINE B4 -28 264 11 8 1214 344 109 0 0 chr11 82498961 82499016 -39344840 - ID_B1 SINE B4 0 224 170 8 1214 337 157 129 0 chr11 82499016 82499031 -39344825 - B1F SINE Alu 0 149 71 8 1214 308 357 17 25 chr11 82499683 82499711 -39344145 + ID SINE ID 60 86 -138 8 1214 332 288 61 10 chr11 82499711 82499814 -39344042 + B1F1 SINE Alu 4 108 -9 8 1214 1438 66 0 0 chr11 82499818 82500000 -39343856 + L1_Mm LINE L1 5508 5689 -194 8 1214 7013 64 5 5 chr11 82500000 82500893 -39342963 + L1Md_F2 LINE L1 5690 6582 0 1 1214 313 287 146 8 chr11 82502423 82502546 -39341310 + MIR SINE MIR 46 185 -77 2 1214 1993 149 64 35 chr11 82502942 82503162 -39340694 - RMER10A LTR ERVL -6 436 215 3 1214 2620 44 19 6 chr11 82503162 82503485 -39340371 - ORR1A2 LTR MaLR 0 327 1 4 1214 1993 149 64 35 chr11 82503485 82503688 -39340168 - RMER10A LTR ERVL -228 214 1 3 1214 202 269 0 0 chr11 82503880 82503932 -39339924 + G-rich Low_complexity Low_complexity 1 52 0 5 1214 282 256 194 108 chr11 82505176 82505340 -39338516 + MLT2B3 LTR ERVL 3 209 -347 6 1214 387 0 0 0 chr11 82505340 82505383 -39338473 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1214 273 256 194 108 chr11 82505383 82505616 -39338240 + MLT2B3 LTR ERVL 210 433 -123 6 1214 287 192 0 0 chr11 82506368 82506420 -39337436 + L1M5 LINE L1 4949 5000 -1146 8 1214 265 100 0 0 chr11 82507044 82507084 -39336772 + MIRm SINE MIR 115 154 -122 9 1214 180 273 97 26 chr11 82507548 82507661 -39336195 - MIRb SINE MIR -26 242 122 1 1214 423 0 0 0 chr11 82507762 82507809 -39336047 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1214 1030 256 38 19 chr11 82507809 82508072 -39335784 - B4 SINE B4 -23 269 2 1 1214 279 175 0 45 chr11 82508303 82508369 -39335487 + B1_Mur4 SINE Alu 1 63 -87 1 1214 533 88 12 0 chr11 82508395 82508475 -39335381 + (GA)n Simple_repeat Simple_repeat 1 81 0 1 1214 818 10 0 29 chr11 82508475 82508579 -39335277 + (GAAAA)n Simple_repeat Simple_repeat 5 105 0 1 1214 1214 90 68 0 chr11 82509922 82510099 -39333757 + B2_Mm2 SINE B2 2 190 -5 1 1214 1375 178 97 103 chr11 82510145 82510590 -39333266 + RMER10A LTR ERVL 1 442 0 1 1214 756 174 0 29 chr11 82510620 82510756 -39333100 + B1_Mur1 SINE Alu 13 144 -5 1 1214 199 236 18 0 chr11 82510979 82511034 -39332822 - MIR SINE MIR -56 152 97 1 1214 952 104 54 24 chr11 82511108 82511276 -39332580 + URR1A DNA MER1_type 54 226 0 1 1214 203 162 0 0 chr11 82512446 82512483 -39331373 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1214 1659 36 0 5 chr11 82514130 82514324 -39329532 - B2_Mm1a SINE B2 0 193 1 2 1214 854 61 0 0 chr11 82514324 82514439 -39329417 + B1_Mus2 SINE Alu 33 147 0 2 1214 26 50 0 0 chr11 82514849 82514889 -39328967 + AT_rich Low_complexity Low_complexity 1 40 0 2 1214 303 28 0 0 chr11 82515241 82515277 -39328579 + (GGA)n Simple_repeat Simple_repeat 3 38 0 2 1214 201 241 103 0 chr11 82515333 82515391 -39328465 + MIRc SINE MIR 95 158 -110 2 1214 302 250 92 0 chr11 82515621 82515697 -39328159 + ID_B1 SINE B4 87 169 -55 2 1214 1087 75 0 58 chr11 82515747 82515902 -39327954 + B1_Mm SINE Alu 2 147 0 2 1214 279 0 0 0 chr11 82515902 82515933 -39327923 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1214 207 281 102 68 chr11 82516341 82516517 -39327339 - L2 LINE L2 -343 3076 2895 2 1214 373 298 69 82 chr11 82517524 82517769 -39326087 + MLT1J LTR MaLR 90 331 -181 3 1214 417 279 0 0 chr11 82517785 82517896 -39325960 + PB1D10 SINE Alu 3 113 -4 3 1214 457 237 31 0 chr11 82518412 82518509 -39325347 - RSINE1 SINE B4 -63 102 3 3 1214 256 240 140 40 chr11 82519030 82519130 -39324726 + PB1D10 SINE Alu 1 110 -7 3 1214 391 188 297 0 chr11 82519767 82519932 -39323924 - L1M4 LINE L1 -2254 3892 3679 3 1214 250 320 39 10 chr11 82519937 82520041 -39323815 - MER68 LTR ERVL -9 554 448 3 1214 371 250 200 13 chr11 82520178 82520328 -39323528 - MER68 LTR ERVL -320 243 66 3 1214 207 254 141 0 chr11 82520947 82521018 -39322838 - MIR SINE MIR -79 183 103 3 1214 632 264 236 0 chr11 82522050 82522327 -39321529 + MTEa LTR MaLR 38 379 0 3 1214 830 292 135 22 chr11 82522439 82522519 -39321337 - MER47B DNA MER2_type -5 413 334 3 1214 897 199 53 38 chr11 82522519 82522728 -39321128 + B3 SINE B2 5 216 0 3 1214 830 292 135 22 chr11 82522728 82523018 -39320838 - MER47B DNA MER2_type -85 333 1 3 1214 271 302 213 11 chr11 82523766 82523940 -39319916 + L1M2 LINE L1 5433 5641 -659 4 1214 1024 168 101 15 chr11 82524115 82524314 -39319542 + B3 SINE B2 1 216 0 4 1214 1153 82 7 0 chr11 82524336 82524483 -39319373 + B1_Mus1 SINE Alu 1 148 0 4 1214 276 30 0 0 chr11 82524624 82524657 -39319199 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1214 312 91 0 0 chr11 82524821 82524865 -39318991 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1214 423 68 0 0 chr11 82524901 82524960 -39318896 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1214 647 298 118 20 chr11 82524961 82525561 -39318295 - L1_Mur2 LINE L1 -3016 3127 2445 4 1214 716 197 19 52 chr11 82525603 82525758 -39318098 - B3 SINE B2 -65 151 2 4 1214 2510 176 135 21 chr11 82525999 82526559 -39317297 - RMER1B Other Other -13 1053 237 4 1214 736 289 55 26 chr11 82526559 82526939 -39316917 - L1_Mur2 LINE L1 -4048 1829 1439 4 1214 212 128 0 49 chr11 82527121 82527162 -39316694 + A-rich Low_complexity Low_complexity 2 40 0 4 1214 321 189 77 51 chr11 82527586 82527664 -39316192 + ID4_ SINE ID 2 81 -2 5 1214 1402 100 5 0 chr11 82527740 82527930 -39315926 + B2_Mm2 SINE B2 1 191 -4 5 1214 238 207 72 12 chr11 82527941 82528024 -39315832 + L1M4 LINE L1 3402 3489 -2657 5 1214 720 278 68 4 chr11 82528376 82528654 -39315202 - Kanga1d DNA Tc2 -3 606 311 5 1214 1119 83 14 0 chr11 82528967 82529111 -39314745 + B1_Mus2 SINE Alu 1 146 -1 5 1214 243 0 0 0 chr11 82529112 82529139 -39314717 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1214 444 37 0 0 chr11 82529140 82529194 -39314662 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 5 1214 849 158 16 0 chr11 82529266 82529393 -39314463 + B1_Mur1 SINE Alu 2 130 -19 5 1214 231 270 107 92 chr11 82529494 82529690 -39314166 + L1M4 LINE L1 4541 4739 -1407 5 1214 1230 41 7 0 chr11 82529724 82529869 -39313987 - B1_Mus2 SINE Alu 0 147 2 5 1214 297 220 34 0 chr11 82530078 82530137 -39313719 + RSINE1 SINE B4 48 108 -57 5 1214 356 59 20 0 chr11 82530154 82530205 -39313651 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1214 229 159 36 24 chr11 82530306 82530390 -39313466 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1214 619 273 22 28 chr11 82531205 82531386 -39312470 + B3A SINE B2 2 181 -17 6 1214 255 257 70 14 chr11 82531485 82531556 -39312300 + B1F1 SINE Alu 33 107 -42 6 1214 454 209 17 0 chr11 82531610 82531716 -39312140 + B1F SINE Alu 4 113 -7 6 1214 231 284 74 0 chr11 82532283 82532364 -39311492 + PB1D10 SINE Alu 17 103 -14 6 1214 2755 113 9 99 chr11 82533816 82534067 -39309789 - MTC LTR MaLR 0 421 212 6 1214 1192 68 0 0 chr11 82534067 82534213 -39309643 - B1_Mus2 SINE Alu 0 147 2 6 1214 2755 113 9 99 chr11 82534213 82534424 -39309432 - MTC LTR MaLR -210 211 1 6 1214 223 338 25 0 chr11 82535143 82535223 -39308633 + B4 SINE B4 8 89 -203 6 1214 315 269 278 21 chr11 82535232 82535376 -39308480 + B3A SINE B2 2 182 -16 6 1214 2802 64 3 0 chr11 82535436 82535781 -39308075 + ORR1A1 LTR MaLR 1 346 0 7 1214 381 239 27 68 chr11 82536237 82536385 -39307471 - B1F2 SINE Alu -7 142 1 7 1214 1384 72 39 0 chr11 82537482 82537662 -39306194 + B2_Mm2 SINE B2 2 188 -7 7 1214 500 117 0 113 chr11 82537898 82538004 -39305852 + B2_Mm2 SINE B2 65 158 -37 7 1214 207 0 0 0 chr11 82538005 82538028 -39305828 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1214 308 331 77 0 chr11 82538038 82538207 -39305649 + L1_Rod LINE L1 1822 2003 -3844 7 1214 360 216 63 56 chr11 82538248 82538390 -39305466 + L1M2 LINE L1 2879 3021 -3122 7 1214 419 306 31 31 chr11 82538367 82538593 -39305263 + L1_Mur3 LINE L1 3265 3490 -2390 7 1214 2295 262 82 91 chr11 82539010 82539628 -39304228 + L1_Mur3 LINE L1 3528 4178 -1702 7 1214 963 114 57 0 chr11 82539628 82539768 -39304088 + B1_Mur4 SINE Alu 1 148 -2 7 1214 2295 262 82 91 chr11 82539768 82540142 -39303714 + L1_Mur3 LINE L1 4179 4536 -1344 7 1214 1368 60 11 32 chr11 82540142 82540331 -39303525 + B2_Mm1t SINE B2 2 186 -7 7 1214 2295 262 82 91 chr11 82540331 82540442 -39303414 + L1_Mur3 LINE L1 4537 4639 -1241 7 1214 1039 197 30 10 chr11 82540442 82540642 -39303214 + B3 SINE B2 5 208 -8 8 1214 2295 262 82 91 chr11 82540642 82540707 -39303149 + L1_Mur3 LINE L1 4640 4687 -1193 7 1214 1780 245 125 19 chr11 82540705 82541379 -39302477 + L1_Mur3 LINE L1 3847 4591 -1289 8 1214 216 0 0 0 chr11 82542788 82542812 -39301044 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1214 502 212 15 0 chr11 82542962 82542978 -39300878 + polypyrimidine Low_complexity Low_complexity 121 136 0 8 1214 1221 106 0 0 chr11 82542978 82543158 -39300698 + (TCC)n Simple_repeat Simple_repeat 1 180 0 8 1214 502 212 15 0 chr11 82543158 82543273 -39300583 + CT-rich Low_complexity Low_complexity 4 120 0 8 1214 723 231 0 7 chr11 82543273 82543421 -39300435 - B1_Mus1 SINE Alu 0 148 2 8 1214 1227 233 84 55 chr11 82543574 82544014 -39299842 + L1M2 LINE L1 4630 5082 -1061 7 1214 810 90 0 0 chr11 82544019 82544141 -39299715 + B1_Mus2 SINE Alu 26 147 0 8 1214 357 125 0 0 chr11 82544141 82544197 -39299659 + (GA)n Simple_repeat Simple_repeat 2 57 0 8 1214 759 137 0 0 chr11 82544189 82544313 -39299543 + (GAA)n Simple_repeat Simple_repeat 3 126 0 8 1214 295 221 52 0 chr11 82544432 82544509 -39299347 - L1M2 LINE L1 -791 5509 5429 9 1214 199 79 53 0 chr11 82544518 82544556 -39299300 + (TTG)n Simple_repeat Simple_repeat 2 41 0 9 1214 226 226 129 12 chr11 82544570 82544655 -39299201 + MTD LTR MaLR 222 316 -103 9 1214 397 0 38 0 chr11 82544667 82544720 -39299136 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 9 1214 1190 41 14 0 chr11 82544720 82544865 -39298991 - B1_Mus2 SINE Alu 0 147 1 9 1214 406 157 14 2 chr11 82544875 82544959 -39298897 + MTD LTR MaLR 296 405 -14 9 1214 448 294 16 23 chr11 82544961 82545090 -39298766 + RSINE1 SINE B4 32 159 -6 9 1214 278 288 46 46 chr11 82545325 82545434 -39298422 - RSINE1 SINE B4 0 165 57 9 1214 22 35 0 0 chr11 82546034 82546063 -39297793 + AT_rich Low_complexity Low_complexity 1 29 0 9 1214 1151 37 0 0 chr11 82546071 82546207 -39297649 + B1_Mus2 SINE Alu 2 137 -10 9 1214 192 40 0 0 chr11 82546207 82546232 -39297624 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1214 215 368 13 13 chr11 82546664 82546741 -39297115 + L4 LINE RTE 1048 1124 -905 1 1214 263 300 0 28 chr11 82546847 82546919 -39296937 - ID4_ SINE ID -11 72 3 1 1214 268 319 21 36 chr11 82547333 82547473 -39296383 + L1M4 LINE L1 3012 3149 -2997 1 1214 1366 81 38 0 chr11 82547498 82547683 -39296173 + B2_Mm2 SINE B2 2 193 -2 1 1214 340 211 58 43 chr11 82547687 82547802 -39296054 + B1F1 SINE Alu 2 120 0 1 1214 353 268 30 20 chr11 82547951 82548050 -39295806 + RSINE1 SINE B4 56 155 -10 1 1214 225 346 16 77 chr11 82548127 82548321 -39295535 - MER58A DNA MER1_type -40 184 3 1 1214 792 276 14 56 chr11 82548340 82548628 -39295228 + L1M2 LINE L1 4771 5046 -1097 1 1214 388 227 0 0 chr11 82548652 82548718 -39295138 + B1_Mur3 SINE Alu 4 69 -80 1 1214 329 250 170 32 chr11 82548814 82549217 -39294639 + L1M2 LINE L1 5116 5565 -619 1 1214 213 268 0 0 chr11 82549998 82550054 -39293802 + ID4 SINE ID 22 77 -6 1 1214 243 0 0 0 chr11 82550059 82550086 -39293770 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1214 226 290 57 14 chr11 82550231 82550301 -39293555 + PB1D10 SINE Alu 28 100 -17 1 1214 1162 75 0 7 chr11 82550380 82550528 -39293328 + B1_Mm SINE Alu 1 147 0 1 1214 180 0 0 0 chr11 82550540 82550560 -39293296 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1214 321 238 0 81 chr11 82550788 82550875 -39292981 - PB1D7 SINE Alu -40 80 1 1 1214 499 259 50 114 chr11 82550988 82551057 -39292799 - L1MA8 LINE L1 -120 6171 6104 1 1214 764 193 7 20 chr11 82551057 82551205 -39292651 + B1_Mur1 SINE Alu 3 148 -1 1 1214 499 259 50 114 chr11 82551205 82551432 -39292424 - L1MA8 LINE L1 -188 6103 5894 1 1214 734 253 109 27 chr11 82551494 82551750 -39292106 - B4A SINE B4 -14 278 2 1 1214 1363 95 26 0 chr11 82551756 82551945 -39291911 - B2_Mm2 SINE B2 -1 194 1 1 1214 684 247 66 6 chr11 82552041 82552090 -39291766 - B3 SINE B2 -6 210 152 1 1214 405 0 0 0 chr11 82552090 82552135 -39291721 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1214 684 247 66 6 chr11 82552135 82552268 -39291588 - B3 SINE B2 -65 151 19 1 1214 422 18 0 18 chr11 82552286 82552342 -39291514 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 1 1214 1177 30 0 0 chr11 82552342 82552477 -39291379 - B1_Mus2 SINE Alu -11 136 2 1 1214 480 269 118 39 chr11 82552623 82552801 -39291055 + B3A SINE B2 1 192 -6 1 1214 790 131 6 94 chr11 82552839 82552999 -39290857 - B1_Mm SINE Alu 0 147 2 1 1214 537 266 16 0 chr11 82553360 82553484 -39290372 + B1F1 SINE Alu 2 127 -22 1 1214 633 164 0 8 chr11 82553511 82553628 -39290228 + B3A SINE B2 1 116 -82 1 1214 1674 37 0 0 chr11 82553758 82553948 -39289908 + B2_Mm1a SINE B2 1 190 -3 1 1214 744 309 64 20 chr11 82553968 82554312 -39289544 - Charlie1a DNA MER1_type -826 629 271 1 1214 334 263 92 35 chr11 82554319 82554461 -39289395 - B3 SINE B2 -12 204 55 1 1214 363 291 182 44 chr11 82554483 82554735 -39289121 - Charlie1a DNA MER1_type -1168 287 1 1 1214 207 0 0 0 chr11 82555049 82555072 -39288784 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1 1214 423 222 49 0 chr11 82555135 82555216 -39288640 + B1F SINE Alu 5 89 -60 1 1214 649 165 188 68 chr11 82555273 82555449 -39288407 + B3A SINE B2 2 198 0 1 1214 651 196 114 69 chr11 82556228 82556403 -39287453 + B3 SINE B2 28 210 -6 1 1214 360 111 0 0 chr11 82556445 82556508 -39287348 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 1 1214 409 238 0 0 chr11 82556701 82556785 -39287071 - RSINE1 SINE B4 0 165 82 1 1214 256 254 14 43 chr11 82556868 82556938 -39286918 - RSINE1 SINE B4 -87 78 11 1 1214 225 295 33 0 chr11 82556968 82557029 -39286827 - ID4_ SINE ID -6 77 15 1 1214 2906 132 184 10 chr11 82557050 82557658 -39286198 - RMER6A LTR ERVK 0 756 1 1 1214 601 242 23 8 chr11 82557699 82557832 -39286024 + B1F SINE Alu 1 135 -14 1 1214 930 66 0 0 chr11 82557832 82557954 -39285902 + (GGAA)n Simple_repeat Simple_repeat 1 122 0 1 1214 971 88 0 58 chr11 82558146 82558302 -39285554 + B1_Mus2 SINE Alu 1 147 0 1 1214 234 125 91 30 chr11 82558502 82558568 -39285288 - MT2A LTR ERVL 0 567 484 1 1214 571 291 58 55 chr11 82558626 82558971 -39284885 - MT2A LTR ERVL -82 451 106 1 1214 264 75 0 0 chr11 82559723 82559763 -39284093 - B1_Mus2 SINE Alu -9 138 99 1 1214 679 196 111 0 chr11 82559785 82559938 -39283918 - B3 SINE B2 -46 170 1 1 1214 492 331 69 0 chr11 82560001 82560176 -39283680 - MTEa LTR MaLR -191 188 2 1 1214 260 230 58 0 chr11 82560178 82560265 -39283591 - Tigger5 DNA MER2_type -24 2382 2291 1 1214 619 304 85 19 chr11 82560259 82560470 -39283386 - Tigger5 DNA MER2_type -2163 243 20 1 1214 490 292 94 58 chr11 82561084 82561393 -39282463 + L1MEg LINE L1 1940 2259 -3983 1 1214 1090 196 15 5 chr11 82561451 82561656 -39282200 + B3 SINE B2 1 207 -9 1 1214 489 62 0 0 chr11 82561665 82561730 -39282126 - B1_Mus1 SINE Alu -83 65 1 1 1214 606 147 86 72 chr11 82561764 82561787 -39282069 + B1_Mur4 SINE Alu 1 23 -127 1 1214 3674 36 9 7 chr11 82561787 82562235 -39281621 - L1Md_F2 LINE L1 -2 6580 6132 1 1214 606 147 86 72 chr11 82562235 82562350 -39281506 + B1_Mur4 SINE Alu 24 141 -9 1 1214 234 317 65 37 chr11 82562458 82562566 -39281290 + PB1 SINE Alu 15 125 -2 1 1214 336 250 0 0 chr11 82562582 82562658 -39281198 + ID2 SINE ID 8 83 0 1 1214 1162 55 14 0 chr11 82562746 82562891 -39280965 + B1_Mus2 SINE Alu 1 147 0 1 1214 474 222 74 0 chr11 82562924 82563032 -39280824 + PB1D10 SINE Alu 1 116 -1 1 1214 438 229 110 37 chr11 82563168 82563304 -39280552 + B1_Mur1 SINE Alu 3 148 -1 1 1214 435 274 96 54 chr11 82563345 82563584 -39280272 + L1MEg LINE L1 2463 2711 -3435 1 1214 376 212 12 0 chr11 82563729 82563814 -39280042 + L1MEg LINE L1 2741 2826 -3320 1 1214 180 0 0 0 chr11 82563951 82563971 -39279885 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1214 400 268 62 0 chr11 82564198 82564310 -39279546 + PB1D7 SINE Alu 2 120 0 1 1214 1155 62 14 0 chr11 82564351 82564496 -39279360 + B1_Mus1 SINE Alu 2 148 0 1 1214 266 0 0 29 chr11 82564499 82564534 -39279322 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1214 180 0 0 0 chr11 82564681 82564701 -39279155 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1214 883 170 0 20 chr11 82564735 82564885 -39278971 + B1_Mur2 SINE Alu 2 148 -1 1 1214 288 319 0 41 chr11 82564920 82565018 -39278838 + PB1D10 SINE Alu 15 108 -9 1 1214 256 203 62 15 chr11 82565314 82565379 -39278477 + L1MEg LINE L1 3362 3429 -2717 1 1214 1711 142 91 98 chr11 82565604 82565849 -39278007 - ORR1B1 LTR MaLR 0 394 159 1 1214 1147 75 0 0 chr11 82565849 82565996 -39277860 - B1_Mus1 SINE Alu 0 148 2 1 1214 1711 142 91 98 chr11 82565996 82566147 -39277709 - ORR1B1 LTR MaLR -236 158 1 1 1214 322 55 54 18 chr11 82566512 82566568 -39277288 + (CCCCCT)n Simple_repeat Simple_repeat 2 59 0 1 1214 409 257 149 54 chr11 82566848 82566996 -39276860 + RSINE1 SINE B4 4 165 0 1 1214 330 195 0 0 chr11 82566996 82567078 -39276778 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1214 237 300 12 0 chr11 82567381 82567461 -39276395 + MamRep605 Unknown Unknown 584 664 -212 1 1214 191 139 0 65 chr11 82567597 82567643 -39276213 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 1 1214 1079 125 43 21 chr11 82567872 82568060 -39275796 + B2_Mm2 SINE B2 2 193 -2 1 1214 1055 197 4 0 chr11 82568143 82568345 -39275511 - B3 SINE B2 -6 210 3 1 1214 897 250 15 0 chr11 82568812 82569008 -39274848 - B3 SINE B2 -13 203 5 1 1214 525 239 31 0 chr11 82569342 82569472 -39274384 + L1MC4 LINE L1 7441 7574 -468 1 1214 928 174 0 0 chr11 82569472 82569621 -39274235 + B1_Mur3 SINE Alu 1 149 0 1 1214 837 233 78 0 chr11 82569627 82569820 -39274036 + B3 SINE B2 9 216 0 1 1214 522 238 30 8 chr11 82569843 82569974 -39273882 + RSINE1 SINE B4 4 137 -28 1 1214 206 118 0 0 chr11 82570007 82570041 -39273815 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1214 1053 69 7 27 chr11 82570041 82570190 -39273666 - B1_Mus1 SINE Alu 0 148 3 1 1214 314 280 27 27 chr11 82570197 82570307 -39273549 + L1MC4 LINE L1 7552 7661 -381 1 1214 283 219 123 0 chr11 82570468 82570541 -39273315 + B1F1 SINE Alu 1 82 -67 1 1214 1729 143 88 0 chr11 82570542 82570836 -39273020 + Lx4A LINE L1 6739 7058 0 1 1214 225 0 0 0 chr11 82570836 82570861 -39272995 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1214 249 284 40 0 chr11 82570882 82570956 -39272900 + B1F SINE Alu 73 149 0 1 1214 360 0 0 0 chr11 82570961 82571001 -39272855 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1214 438 114 0 0 chr11 82571001 82571080 -39272776 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1214 256 161 0 35 chr11 82571206 82571264 -39272592 + L1MC4 LINE L1 7985 8040 -2 1 1214 486 275 9 0 chr11 82571264 82571373 -39272483 - PB1D10 SINE Alu -7 110 1 1 1214 218 306 0 89 chr11 82571543 82571622 -39272234 - RSINE1 SINE B4 -11 154 83 1 1214 227 255 82 109 chr11 82571627 82571737 -39272119 - PB1D10 SINE Alu -10 107 1 1 1214 567 229 19 77 chr11 82571737 82571812 -39272044 - B4A SINE B4 -219 73 8 1 1214 274 301 0 0 chr11 82571928 82572011 -39271845 - MIR SINE MIR -32 230 148 1 1214 1344 84 20 25 chr11 82573337 82573533 -39270323 + B2_Mm2 SINE B2 1 195 0 1 1214 28 48 0 0 chr11 82573673 82573715 -39270141 + AT_rich Low_complexity Low_complexity 1 42 0 1 1214 692 250 96 10 chr11 82574519 82574717 -39269139 + B3 SINE B2 2 216 0 1 1214 1101 64 45 0 chr11 82574742 82574898 -39268958 + B2_Mm2 SINE B2 2 164 -31 1 1214 327 121 0 0 chr11 82574898 82574956 -39268900 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1 1214 292 247 49 61 chr11 82574971 82575053 -39268803 + ID4 SINE ID 3 83 0 1 1214 854 191 0 0 chr11 82575070 82575211 -39268645 - B1_Mus2 SINE Alu -6 141 1 1 151 489 201 390 0 chr11 82575219 82575373 -39268483 - B3 SINE B2 0 216 3 1 1215 331 226 0 0 chr11 82575428 82575490 -39268366 - ID4 SINE ID -20 63 2 1 1215 334 204 19 125 chr11 82575540 82575668 -39268188 + PB1D10 SINE Alu 1 116 -1 1 1215 1025 143 11 21 chr11 82576022 82576208 -39267648 + B2_Mm2 SINE B2 2 185 -10 2 1215 809 239 22 11 chr11 82576834 82577012 -39266844 + B3A SINE B2 3 182 -16 2 1215 244 297 81 0 chr11 82577266 82577340 -39266516 - MIRb SINE MIR -177 91 12 2 1215 208 229 0 20 chr11 82578332 82578381 -39265475 + GA-rich Low_complexity Low_complexity 2 49 0 2 1215 224 171 0 0 chr11 82580108 82580149 -39263707 - MIR SINE MIR -35 227 187 2 1215 300 250 170 0 chr11 82580205 82580305 -39263551 + PB1D10 SINE Alu 1 117 0 2 1215 774 167 241 12 chr11 82580629 82580799 -39263057 - B3 SINE B2 -6 210 2 2 1215 1145 62 14 0 chr11 82580910 82581055 -39262801 - B1_Mus2 SINE Alu 0 147 1 2 1215 1448 34 79 0 chr11 82581428 82581445 -39262411 - B2_Mm1t SINE B2 -1 192 176 2 1215 279 0 0 0 chr11 82581445 82581476 -39262380 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1215 1448 34 79 0 chr11 82581476 82581636 -39262220 - B2_Mm1t SINE B2 -18 175 2 2 1215 288 316 31 10 chr11 82581636 82581732 -39262124 + PB1D10 SINE Alu 19 116 -1 2 1215 183 42 0 0 chr11 82581920 82581944 -39261912 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1215 270 0 0 0 chr11 82582090 82582120 -39261736 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1215 348 272 0 12 chr11 82582156 82582238 -39261618 - B3A SINE B2 -106 92 12 2 1215 182 277 21 0 chr11 82582590 82582637 -39261219 - MIRc SINE MIR -16 252 205 2 1215 225 288 0 36 chr11 82582796 82582879 -39260977 - ID4 SINE ID 0 83 4 2 1215 201 286 70 14 chr11 82582919 82582990 -39260866 + MIRb SINE MIR 114 188 -80 2 1215 222 252 97 73 chr11 82583231 82583355 -39260501 + L2 LINE L2 2258 2384 -1035 2 1215 223 261 132 16 chr11 82583652 82583773 -39260083 + L2 LINE L2 2528 2662 -757 2 1215 1131 40 7 0 chr11 82583861 82584011 -39259845 - B2_Mm1t SINE B2 -2 191 41 2 1215 1205 41 7 0 chr11 82584784 82584930 -39258926 - B1_Mm SINE Alu 0 147 1 2 1215 399 261 33 8 chr11 82584997 82585117 -39258739 + ID_B1 SINE B4 102 224 0 2 1215 241 296 24 12 chr11 82585195 82585277 -39258579 - ID2 SINE ID 0 83 1 2 1215 836 135 253 0 chr11 82585339 82585509 -39258347 + B3 SINE B2 4 216 0 2 1215 1433 79 16 0 chr11 82585682 82585872 -39257984 + B2_Mm1a SINE B2 1 193 0 2 1215 811 175 64 6 chr11 82586052 82586224 -39257632 - ORR1C2 LTR MaLR -202 182 1 2 1215 215 316 58 68 chr11 82586240 82586430 -39257426 - B3A SINE B2 0 198 11 2 1215 473 305 50 50 chr11 82586276 82586435 -39257421 - RSINE1 SINE B4 0 165 7 2 1215 353 203 0 14 chr11 82586439 82586509 -39257347 + MTEb LTR MaLR 61 129 -250 2 1215 294 229 0 0 chr11 82586511 82586581 -39257275 + GA-rich Low_complexity Low_complexity 3 72 0 2 1215 1144 68 7 0 chr11 82586975 82587121 -39256735 + B1_Mus2 SINE Alu 1 147 0 2 1215 736 109 17 33 chr11 82587161 82587298 -39256558 + B1_Mur4 SINE Alu 1 144 -6 2 1215 667 217 102 0 chr11 82587323 82587489 -39256367 - B3A SINE B2 -8 190 8 2 1215 396 59 0 0 chr11 82587489 82587540 -39256316 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2 1215 1101 73 0 0 chr11 82587551 82587688 -39256168 - B1_Mus2 SINE Alu -9 138 2 2 1215 825 148 42 18 chr11 82588071 82588236 -39255620 - URR1A DNA MER1_type 0 226 58 2 1215 499 288 171 34 chr11 82588368 82588878 -39254978 + L2a LINE L2 2776 3404 -22 2 1215 240 194 143 16 chr11 82589148 82589211 -39254645 + B4 SINE B4 2 72 -220 2 1215 180 0 0 0 chr11 82589359 82589379 -39254477 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1215 426 193 102 0 chr11 82589400 82589488 -39254368 + PB1D10 SINE Alu 13 109 -8 2 1215 21 36 0 0 chr11 82589732 82589760 -39254096 + AT_rich Low_complexity Low_complexity 1 28 0 2 1215 635 232 64 14 chr11 82589763 82589903 -39253953 + B1_Mur2 SINE Alu 2 148 -1 2 1215 2046 256 117 18 chr11 82589904 82590731 -39253125 + Lx8 LINE L1 6192 7100 -373 2 1215 357 213 182 47 chr11 82590773 82590921 -39252935 + Lx8 LINE L1 7300 7467 -6 2 1215 1263 34 0 0 chr11 82590961 82591108 -39252748 + B1_Mus2 SINE Alu 1 147 0 2 1215 543 202 17 26 chr11 82591127 82591244 -39252612 + PB1D9 SINE Alu 3 118 -2 2 1215 903 239 93 19 chr11 82591370 82591694 -39252162 + L1MC LINE L1 4530 4877 -1269 2 1215 426 262 90 0 chr11 82592034 82592156 -39251700 - B1_Mur1 SINE Alu -10 139 7 2 1215 1226 49 0 0 chr11 82592234 82592377 -39251479 + B1_Mus2 SINE Alu 5 147 0 2 1215 371 164 30 0 chr11 82592458 82592525 -39251331 + L1MC LINE L1 4960 5028 -1118 2 1215 230 254 197 60 chr11 82592525 82592642 -39251214 - MIRb SINE MIR -115 153 21 2 1215 423 56 0 0 chr11 82592886 82592940 -39250916 + (GGAAA)n Simple_repeat Simple_repeat 3 56 0 2 1215 841 114 0 50 chr11 82593178 82593317 -39250539 + B1_Mus1 SINE Alu 4 135 -13 2 1215 410 310 71 48 chr11 82593426 82593694 -39250162 - MER33 DNA MER1_type -50 274 1 2 1215 235 260 13 0 chr11 82594777 82594854 -39249002 + (CGCGG)n Simple_repeat Simple_repeat 5 82 0 2 1215 472 250 47 54 chr11 82595468 82595616 -39248240 - B1F2 SINE Alu -2 147 1 2 1215 455 161 295 0 chr11 82595672 82595784 -39248072 + B1_Mus2 SINE Alu 2 146 -1 2 1215 368 296 38 0 chr11 82596301 82596433 -39247423 - MIR SINE MIR -84 178 42 2 1215 289 281 99 76 chr11 82597497 82597759 -39246097 - L1MC4 LINE L1 -7 8035 7768 2 1215 318 268 25 82 chr11 82597935 82598057 -39245799 - PB1D10 SINE Alu 0 117 3 2 1215 1248 185 9 0 chr11 82598361 82598572 -39245284 + B3 SINE B2 1 213 -3 2 1215 289 273 102 0 chr11 82600145 82600233 -39243623 - B1F2 SINE Alu -11 106 10 2 1215 219 300 0 0 chr11 82600181 82600241 -39243615 - B4A SINE B4 -146 146 87 2 1215 1219 61 0 0 chr11 82601442 82601589 -39242267 - B1_Mus2 SINE Alu 0 147 1 2 1215 267 189 0 0 chr11 82601971 82602024 -39241832 + CT-rich Low_complexity Low_complexity 2 54 0 2 1215 420 111 0 0 chr11 82602024 82602087 -39241769 + (TTA)n Simple_repeat Simple_repeat 2 64 0 2 1215 615 220 22 22 chr11 82602088 82602223 -39241633 - B1_Mur2 SINE Alu -13 136 2 2 1215 252 200 187 0 chr11 82603758 82603833 -39240023 + RMER30 DNA MER1_type 89 177 -25 2 1215 261 309 56 9 chr11 82604858 82604966 -39238890 + MIRb SINE MIR 27 139 -129 2 1215 301 255 46 0 chr11 82608110 82608219 -39235637 - ID4_ SINE ID -32 120 7 2 1215 320 277 39 10 chr11 82609824 82609926 -39233930 + RSINE1 SINE B4 3 107 -58 2 1215 1484 58 21 5 chr11 82610142 82610333 -39233523 - B2_Mm2 SINE B2 0 195 2 2 1215 342 157 0 0 chr11 82610461 82610544 -39233312 + CT-rich Low_complexity Low_complexity 1 83 0 2 1215 1209 41 14 0 chr11 82610547 82610692 -39233164 - B1_Mus1 SINE Alu -1 147 1 2 1215 633 239 93 33 chr11 82612156 82612338 -39231518 + B3 SINE B2 1 193 -23 2 1215 261 250 45 143 chr11 82612317 82612429 -39231427 + MT2B LTR ERVL 139 239 -362 2 1215 686 217 15 15 chr11 82612361 82612492 -39231364 + B1_Mur2 SINE Alu 17 147 -2 2 1215 240 299 42 56 chr11 82612506 82612577 -39231279 + PB1D7 SINE Alu 13 82 -38 2 1215 992 126 107 11 chr11 82612593 82612770 -39231086 + B2_Mm2 SINE B2 2 195 0 2 1215 668 265 86 0 chr11 82613494 82613656 -39230200 - ID_B1 SINE B4 -8 216 41 2 1215 261 286 14 14 chr11 82615228 82615299 -39228557 - ID4 SINE ID -1 82 12 2 1215 227 289 0 0 chr11 82615870 82615922 -39227934 + MER3 DNA MER1_type 73 124 -85 2 1215 180 0 0 0 chr11 82617676 82617696 -39226160 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1215 314 270 245 19 chr11 82620413 82620568 -39223288 - MIR SINE MIR 0 262 73 2 1215 459 156 0 13 chr11 82621648 82621726 -39222130 + B1_Mur4 SINE Alu 74 150 0 2 1215 329 260 87 39 chr11 82622413 82622517 -39221339 + PB1D10 SINE Alu 2 110 -7 2 1215 613 218 16 16 chr11 82622542 82622668 -39221188 + B1_Mur1 SINE Alu 5 130 -19 2 1215 215 61 0 29 chr11 82622903 82622937 -39220919 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1215 232 208 0 117 chr11 82622943 82623003 -39220853 + ID4 SINE ID 31 83 0 2 1215 627 80 0 107 chr11 82625040 82625152 -39218704 + B1_Mus2 SINE Alu 8 107 -40 2 1215 243 0 0 0 chr11 82626621 82626648 -39217208 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1215 260 216 0 56 chr11 82627009 82627063 -39216793 - ID4_ SINE ID -28 55 5 2 1215 239 184 22 0 chr11 82627065 82627126 -39216730 - B1F SINE Alu -7 142 79 2 1215 240 35 0 0 chr11 82628382 82628411 -39215445 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 2 1215 1222 41 0 7 chr11 82628611 82628758 -39215098 + B1_Mus1 SINE Alu 2 147 -1 2 1215 945 0 0 0 chr11 82629321 82629426 -39214430 + (GGAAA)n Simple_repeat Simple_repeat 4 108 0 2 1215 213 250 45 0 chr11 82629961 82630005 -39213851 + MIRb SINE MIR 38 83 -185 2 1215 183 292 46 0 chr11 82630123 82630188 -39213668 + MIR SINE MIR 124 191 -71 2 1215 519 123 0 0 chr11 82630221 82630302 -39213554 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1215 860 140 147 0 chr11 82630304 82630454 -39213402 + B2_Mm2 SINE B2 1 172 -23 2 1215 1608 52 0 15 chr11 82630467 82630663 -39213193 + B2_Mm1t SINE B2 1 193 0 2 1215 432 55 0 0 chr11 82630697 82630752 -39213104 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 2 1215 1162 68 0 20 chr11 82630766 82630916 -39212940 + B1_Mus1 SINE Alu 2 148 0 2 1215 800 125 0 32 chr11 82630919 82631043 -39212813 + B1_Mur3 SINE Alu 30 149 0 2 1215 559 256 7 49 chr11 82631048 82631192 -39212664 + B1F SINE Alu 1 138 -11 3 1215 307 182 0 18 chr11 82631251 82631307 -39212549 - PB1D9 SINE Alu -2 118 64 3 1215 230 294 211 32 chr11 82632505 82632600 -39211256 + PB1 SINE Alu 1 112 -15 3 1215 611 160 91 98 chr11 82632619 82632751 -39211105 + B1_Mus2 SINE Alu 17 147 0 3 1215 442 219 307 0 chr11 82633000 82633137 -39210719 - B3A SINE B2 -18 180 2 3 1215 488 84 0 57 chr11 82633333 82633421 -39210435 + L1Md_F2 LINE L1 6500 6582 0 3 1215 189 299 44 15 chr11 82633884 82633952 -39209904 + L3 LINE CR1 2090 2159 -2330 3 1215 410 283 16 24 chr11 82634218 82634341 -39209515 - ID_B1 SINE B4 -4 220 99 3 1215 480 275 30 8 chr11 82634760 82634892 -39208964 + B1_Mur1 SINE Alu 1 135 -14 3 1215 1202 62 0 0 chr11 82634896 82635041 -39208815 + B1_Mm SINE Alu 3 147 0 3 1215 186 71 0 0 chr11 82635830 82635858 -39207998 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 3 1215 248 301 52 52 chr11 82636245 82636322 -39207534 + ID4 SINE ID 5 81 -2 3 1215 744 205 0 0 chr11 82637625 82637752 -39206104 + B3 SINE B2 3 129 -87 3 1215 1117 68 0 76 chr11 82638278 82638436 -39205420 + B1_Mus2 SINE Alu 2 147 0 3 1215 306 125 0 0 chr11 82638436 82638484 -39205372 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1215 188 324 105 29 chr11 82638602 82638707 -39205149 - MIRc SINE MIR -127 141 29 3 1215 295 250 39 0 chr11 82639061 82639165 -39204691 + L1M5 LINE L1 5673 5780 -393 3 1215 268 294 147 0 chr11 82639304 82639372 -39204484 + AluG_3 SINE Alu 142 219 -92 3 1215 579 280 5 111 chr11 82639495 82639712 -39204144 - B3A SINE B2 -4 194 1 3 1215 186 43 0 0 chr11 82639801 82639824 -39204032 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1215 645 177 36 58 chr11 82639824 82639962 -39203894 - B1_Mus1 SINE Alu -2 146 12 3 1215 522 241 25 108 chr11 82639828 82639986 -39203870 - ID_B1 SINE B4 -6 218 74 3 1215 672 211 83 0 chr11 82639988 82640121 -39203735 - B1_Mur3 SINE Alu 0 149 6 3 1215 2742 68 148 126 chr11 82640979 82641480 -39202376 + RLTR1B LTR ERV1 1 512 0 3 1215 971 254 42 27 chr11 82641480 82641743 -39202113 - B4A SINE B4 -25 267 1 3 1215 1329 120 5 0 chr11 82642014 82642205 -39201651 - B2_Mm1t SINE B2 0 193 2 3 1215 455 67 27 0 chr11 82643465 82643540 -39200316 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 3 1215 507 126 172 0 chr11 82643561 82643648 -39200208 - B1_Mur4 SINE Alu -29 121 20 3 1215 183 80 0 0 chr11 82644147 82644172 -39199684 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1215 1236 61 0 0 chr11 82644172 82644319 -39199537 - B1_Mus1 SINE Alu 0 148 2 3 1215 1694 26 0 0 chr11 82645852 82646041 -39197815 - B2_Mm1t SINE B2 -4 189 1 3 1215 386 278 124 29 chr11 82646072 82646209 -39197647 - RSINE1 SINE B4 -13 152 3 3 1215 1750 183 41 15 chr11 82646350 82646744 -39197112 - RMER17C LTR ERVK 0 410 7 3 1215 244 259 19 0 chr11 82646827 82646881 -39196975 - PB1 SINE Alu -25 102 48 3 1215 201 94 0 0 chr11 82646964 82646996 -39196860 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1215 469 272 80 40 chr11 82647401 82647577 -39196279 + RLTR41 LTR ERV1 264 446 0 3 1215 1531 63 5 0 chr11 82648110 82648301 -39195555 - B2_Mm1t SINE B2 -1 192 1 3 1215 1180 69 99 33 chr11 82648370 82648551 -39195305 + B2_Mm2 SINE B2 3 195 0 3 1215 582 265 159 74 chr11 82649497 82649823 -39194033 + ORR1E LTR MaLR 1 354 -5 3 1215 240 307 125 29 chr11 82649877 82649981 -39193875 - PB1D7 SINE Alu -6 114 1 3 1215 1285 86 32 0 chr11 82650213 82650399 -39193457 - B2_Mm1a SINE B2 -1 192 1 3 1215 296 256 56 44 chr11 82650907 82650997 -39192859 + MIR3 SINE MIR 93 183 -25 3 1215 658 260 94 134 chr11 82652627 82652779 -39191077 + MTEb LTR MaLR 1 160 -219 3 1215 270 0 0 0 chr11 82652779 82652809 -39191047 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1215 658 260 94 134 chr11 82652809 82653051 -39190805 + MTEb LTR MaLR 161 379 0 3 1215 294 50 0 0 chr11 82653219 82653259 -39190597 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1215 197 229 178 41 chr11 82653337 82653410 -39190446 + L2a LINE L2 3290 3423 -3 3 1215 368 21 0 0 chr11 82654758 82654806 -39189050 - L1_Mus1 LINE L1 -20 6547 6500 3 1215 609 208 0 67 chr11 82654912 82655046 -39188810 - B1_Mus1 SINE Alu -23 125 1 3 1215 409 199 54 146 chr11 82655046 82655107 -39188749 - MT2B LTR ERVL -438 146 98 3 1215 210 222 176 27 chr11 82655728 82655802 -39188054 + MIRc SINE MIR 167 251 -17 3 1215 1198 82 0 0 chr11 82655803 82655950 -39187906 + B1_Mus1 SINE Alu 2 148 0 3 1215 765 228 42 37 chr11 82655984 82656175 -39187681 + B3 SINE B2 23 214 -2 3 1215 206 208 19 0 chr11 82656522 82656575 -39187281 + GA-rich Low_complexity Low_complexity 3 56 0 3 1215 962 140 160 35 chr11 82656728 82656928 -39186928 - URR1B DNA MER1_type 0 225 1 3 1215 1095 165 80 25 chr11 82657305 82657504 -39186352 + B3 SINE B2 1 210 -6 3 1215 851 164 8 0 chr11 82657534 82657668 -39186188 - B1_Mus1 SINE Alu -13 135 1 3 1215 1310 83 5 72 chr11 82660085 82660292 -39183564 - B2_Mm1a SINE B2 0 193 1 3 1215 261 0 0 0 chr11 82660406 82660435 -39183421 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1215 780 256 38 47 chr11 82660462 82660675 -39183181 - B3 SINE B2 -5 211 1 3 1215 364 228 0 152 chr11 82660853 82660998 -39182858 + MT2B LTR ERVL 153 275 -326 3 1215 952 148 0 7 chr11 82660868 82661018 -39182838 + B1_Mur2 SINE Alu 1 149 0 3 1215 514 200 75 9 chr11 82661880 82661986 -39181870 + B1F SINE Alu 1 113 -36 3 1215 230 330 20 71 chr11 82662074 82662172 -39181684 + B4A SINE B4 84 176 -116 3 1215 1172 68 0 7 chr11 82662360 82662508 -39181348 - B1_Mus1 SINE Alu 0 148 2 3 1215 452 263 87 82 chr11 82662661 82662856 -39181000 - B3A SINE B2 0 198 3 3 1215 1243 92 6 0 chr11 82662915 82663074 -39180782 + B2_Mm2 SINE B2 1 159 -36 3 1215 180 0 0 0 chr11 82663074 82663094 -39180762 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 1215 1243 92 6 0 chr11 82663094 82663108 -39180748 + B2_Mm2 SINE B2 160 174 -21 3 1215 237 119 0 0 chr11 82664673 82664715 -39179141 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1215 293 152 34 102 chr11 82665564 82665652 -39178204 + L1MA5 LINE L1 6218 6299 -1 3 1215 576 94 22 11 chr11 82665991 82666103 -39177753 - B1_Mus2 SINE Alu -7 140 2 3 1215 455 52 0 0 chr11 82666376 82666434 -39177422 + B1_Mm SINE Alu 81 138 -9 3 1215 246 32 0 0 chr11 82666434 82666465 -39177391 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1215 339 259 0 89 chr11 82666674 82666797 -39177059 + RSINE1 SINE B4 47 158 -7 3 1215 358 262 118 79 chr11 82666821 82667133 -39176723 + L1MD1 LINE L1 5654 6003 -2039 3 1215 1935 131 120 22 chr11 82667270 82667637 -39176219 - MTC LTR MaLR 0 421 19 3 1215 594 273 7 20 chr11 82667701 82667847 -39176009 - RSINE1 SINE B4 -13 152 9 3 1215 487 236 160 32 chr11 82667900 82668095 -39175761 + B3 SINE B2 21 216 0 3 1215 652 134 161 23 chr11 82668119 82668249 -39175607 + B1_Mur3 SINE Alu 2 149 0 3 1215 22 0 0 0 chr11 82668266 82668288 -39175568 + AT_rich Low_complexity Low_complexity 1 22 0 3 1215 1271 90 11 11 chr11 82668351 82668530 -39175326 + B2_Mm1t SINE B2 1 179 -14 3 1215 364 104 368 9 chr11 82668586 82668692 -39175164 + B2_Mm2 SINE B2 47 190 -5 3 1215 183 296 183 0 chr11 82669698 82669769 -39174087 + MIR SINE MIR 80 163 -99 3 1215 226 145 47 31 chr11 82670036 82670100 -39173756 + T-rich Low_complexity Low_complexity 1 65 0 3 1215 897 135 0 0 chr11 82670715 82670848 -39173008 + B1_Mus2 SINE Alu 9 141 -6 3 1215 261 83 0 0 chr11 82670853 82670889 -39172967 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 1215 261 0 0 0 chr11 82671329 82671358 -39172498 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1215 707 68 258 57 chr11 82671372 82671496 -39172360 - B1_Mur4 SINE Alu 0 150 2 3 1215 257 239 99 0 chr11 82671861 82671932 -39171924 + MER5C1 DNA MER1_type 96 173 -90 3 1215 526 56 0 0 chr11 82672069 82672140 -39171716 + L1_Mus2 LINE L1 6496 6566 0 3 1215 1005 177 58 19 chr11 82672142 82672349 -39171507 - B3 SINE B2 0 216 2 3 1215 472 238 18 26 chr11 82672679 82672789 -39171067 - PB1D9 SINE Alu -36 111 9 3 1215 334 230 10 139 chr11 82672711 82672812 -39171044 - MT2B LTR ERVL -359 242 155 3 1215 259 231 269 0 chr11 82673013 82673091 -39170765 + PB1D10 SINE Alu 18 116 -1 3 1215 258 32 0 0 chr11 82673161 82673192 -39170664 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1215 256 319 0 0 chr11 82673220 82673292 -39170564 - ID4 SINE ID -7 76 5 3 1215 937 105 5 192 chr11 82673324 82673363 -39170493 + B2_Mm1a SINE B2 3 35 -158 3 1215 1202 75 0 0 chr11 82673363 82673510 -39170346 + B1_Mus2 SINE Alu 1 147 0 3 1215 937 105 5 192 chr11 82673510 82673694 -39170162 + B2_Mm1a SINE B2 36 184 -9 3 1215 871 135 63 14 chr11 82673706 82673849 -39170007 + B1_Mur4 SINE Alu 1 150 0 3 1215 463 202 32 0 chr11 82673954 82674048 -39169808 - B3A SINE B2 -101 97 1 3 1215 189 175 0 0 chr11 82674231 82674271 -39169585 + G-rich Low_complexity Low_complexity 1 40 0 3 1215 787 184 13 20 chr11 82674705 82674855 -39169001 - B1_Mur4 SINE Alu 0 150 2 4 1215 246 62 0 0 chr11 82676015 82676047 -39167809 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 4 1215 289 321 36 0 chr11 82677575 82677659 -39166197 + PB1D10 SINE Alu 1 87 -30 4 1215 2216 194 2 35 chr11 82677678 82678007 -39165849 - MTC LTR MaLR -6 415 96 4 1215 1347 113 0 10 chr11 82678007 82678203 -39165653 - B2_Mm2 SINE B2 -1 194 1 4 1215 2216 194 2 35 chr11 82678203 82678295 -39165561 - MTC LTR MaLR -326 95 8 4 1215 781 182 175 6 chr11 82678323 82678494 -39165362 + B3 SINE B2 17 216 0 4 1215 357 24 0 0 chr11 82678501 82678543 -39165313 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1215 253 357 0 0 chr11 82678555 82678625 -39165231 + ID4 SINE ID 1 70 -13 4 1215 211 200 246 58 chr11 82678617 82678686 -39165170 + PB1D9 SINE Alu 27 108 -12 4 1215 414 0 0 0 chr11 82678714 82678760 -39165096 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4 1215 648 169 82 13 chr11 82678841 82678975 -39164881 + B1_Mur1 SINE Alu 11 147 -2 4 1215 234 91 0 0 chr11 82679217 82679250 -39164606 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1215 1029 61 0 164 chr11 82679250 82679427 -39164429 - B1_Mus1 SINE Alu 0 148 1 4 1215 233 250 28 56 chr11 82679539 82679611 -39164245 - Tigger14a DNA MER2_type -153 171 102 4 1215 504 0 0 0 chr11 82679793 82679849 -39164007 + (GAA)n Simple_repeat Simple_repeat 1 56 0 4 1215 961 145 14 0 chr11 82679864 82680002 -39163854 + B1_Mus1 SINE Alu 1 140 -8 4 1215 204 40 0 0 chr11 82680025 82680050 -39163806 + (GGAAA)n Simple_repeat Simple_repeat 5 29 0 4 1215 349 286 10 71 chr11 82680050 82680148 -39163708 - MIRc SINE MIR -146 122 31 4 1215 264 56 0 0 chr11 82680700 82680706 -39163150 + (A)n Simple_repeat Simple_repeat 1 6 0 4 1215 945 128 13 20 chr11 82680706 82680857 -39162999 + B1_Mur4 SINE Alu 1 150 0 4 1215 264 56 0 0 chr11 82680857 82680886 -39162970 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1215 267 267 58 135 chr11 82680991 82681147 -39162709 + MER5B DNA MER1_type 1 144 -34 4 1215 369 302 26 95 chr11 82681209 82681399 -39162457 - Tigger14a DNA MER2_type -146 178 2 4 1215 180 0 0 0 chr11 82681597 82681617 -39162239 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1215 501 17 0 0 chr11 82681984 82682042 -39161814 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 4 1215 1104 58 14 0 chr11 82682681 82682819 -39161037 + B1_Mm SINE Alu 3 142 -5 4 1215 408 40 0 0 chr11 82682824 82682874 -39160982 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 4 1215 1170 43 14 0 chr11 82683028 82683167 -39160689 - B1_Mus1 SINE Alu -6 142 2 4 1215 219 200 236 0 chr11 82685497 82685552 -39158304 - ID4 SINE ID -3 80 13 4 1215 216 0 0 0 chr11 82686209 82686233 -39157623 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 1215 295 289 107 124 chr11 82686744 82686977 -39156879 - MIRb SINE MIR -6 262 34 4 1215 549 0 0 0 chr11 82687049 82687110 -39156746 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1215 253 188 0 0 chr11 82687131 82687176 -39156680 + B1_Mus1 SINE Alu 4 48 -102 4 1215 227 79 26 0 chr11 82687194 82687232 -39156624 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 4 1215 224 321 18 0 chr11 82687276 82687332 -39156524 - ID SINE ID -150 74 18 4 1215 1084 243 9 0 chr11 82687364 82687578 -39156278 + B3 SINE B2 1 216 0 4 1215 290 318 64 0 chr11 82687623 82687733 -39156123 + PB1D10 SINE Alu 1 117 0 4 1215 2574 122 22 0 chr11 82687755 82688125 -39155731 - ORR1C1 LTR MaLR 0 378 1 4 1215 285 140 0 0 chr11 82688179 82688236 -39155620 + (T)n Simple_repeat Simple_repeat 1 57 0 4 1215 1146 69 20 7 chr11 82688237 82688383 -39155473 - B1_Mus1 SINE Alu 0 148 1 4 1215 432 0 0 0 chr11 82688601 82688649 -39155207 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1215 497 16 16 0 chr11 82689098 82689160 -39154696 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 4 1215 1691 151 168 9 chr11 82689224 82689564 -39154292 + ORR1B1 LTR MaLR 1 394 0 4 1215 255 263 79 0 chr11 82689836 82689912 -39153944 + MLT1L LTR MaLR 529 610 0 4 1215 277 295 0 0 chr11 82690128 82690189 -39153667 - BC1_Mm scRNA scRNA -71 81 21 4 1215 254 258 16 16 chr11 82690350 82690413 -39153443 + ID4 SINE ID 1 63 -20 4 1215 682 242 0 0 chr11 82691046 82691174 -39152682 - RSINE1 SINE B4 -35 130 3 4 1215 212 289 231 7 chr11 82692867 82693010 -39150846 - MIR3 SINE MIR -12 196 22 4 1215 1425 83 5 15 chr11 82693232 82693427 -39150429 - B2_Mm2 SINE B2 -2 193 1 4 1215 266 228 211 29 chr11 82693692 82693796 -39150060 + PB1 SINE Alu 5 127 0 4 1215 1124 52 7 0 chr11 82693798 82693934 -39149922 + B1_Mus1 SINE Alu 1 137 -11 4 1215 1695 26 0 0 chr11 82693934 82694125 -39149731 + B2_Mm1a SINE B2 1 192 -1 4 1215 228 62 0 0 chr11 82694152 82694172 -39149684 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1215 1055 63 27 34 chr11 82694172 82694320 -39149536 + B1_Mm SINE Alu 1 147 0 4 1215 228 62 0 0 chr11 82694320 82694331 -39149525 + (A)n Simple_repeat Simple_repeat 1 11 0 4 1215 268 272 0 134 chr11 82694341 82694460 -39149396 + MT2B LTR ERVL 155 257 -344 4 1215 762 179 0 8 chr11 82694373 82694497 -39149359 + B1_Mur4 SINE Alu 20 142 -8 4 1215 427 273 62 8 chr11 82694506 82694635 -39149221 - B3 SINE B2 -1 215 80 4 1215 765 190 0 49 chr11 82694668 82694812 -39149044 + B1_Mus1 SINE Alu 10 146 -2 4 1215 864 124 0 0 chr11 82694812 82694949 -39148907 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 1215 321 91 23 0 chr11 82694949 82694993 -39148863 + HAL1-3A_ME LINE L1 1981 2025 -833 4 1215 503 159 0 22 chr11 82695513 82695603 -39148253 + PB1D9 SINE Alu 2 89 -31 4 1215 544 184 20 20 chr11 82695783 82695883 -39147973 + PB1D9 SINE Alu 1 100 -20 4 1215 189 0 0 0 chr11 82695888 82695909 -39147947 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1215 865 127 41 34 chr11 82695953 82696100 -39147756 - B1_Mur4 SINE Alu -1 149 2 4 1215 398 306 121 6 chr11 82696597 82696771 -39147085 + MER117 DNA MER1_type 4 197 0 4 1215 246 202 341 12 chr11 82697555 82697640 -39146216 + PB1D9 SINE Alu 4 116 -4 4 1215 407 19 19 0 chr11 82697694 82697746 -39146110 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1215 256 309 0 0 chr11 82697785 82697840 -39146016 + tRNA-Ala-GCY_ tRNA tRNA 14 68 -7 4 1215 1403 224 10 3 chr11 82697865 82698174 -39145682 - L1MD LINE L1 -1578 4568 4258 4 1215 523 202 10 20 chr11 82698889 82698990 -39144866 + B4 SINE B4 1 100 -192 4 1215 631 135 0 0 chr11 82699150 82699246 -39144610 - B1_Mus1 SINE Alu -32 116 21 4 1215 711 308 15 35 chr11 82699243 82699367 -39144489 + B4 SINE B4 94 213 -79 4 1215 1013 229 0 65 chr11 82699367 82699596 -39144260 + B3 SINE B2 1 214 -2 4 1215 711 308 15 35 chr11 82699596 82699673 -39144183 + B4 SINE B4 214 291 -1 4 1215 240 59 0 0 chr11 82699696 82699730 -39144126 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 4 1215 236 235 161 125 chr11 82699855 82699967 -39143889 - PB1D10 SINE Alu -1 116 1 4 1215 236 204 0 0 chr11 82700060 82700104 -39143752 + MER5B DNA MER1_type 135 178 0 4 1215 1023 128 61 6 chr11 82700134 82700315 -39143541 + B2_Mm2 SINE B2 1 191 -4 4 1215 683 223 16 79 chr11 82700381 82700426 -39143430 + ID_B1 SINE B4 47 224 0 4 1215 1064 110 0 0 chr11 82700426 82700571 -39143285 + B1_Mur4 SINE Alu 6 150 0 4 1215 1240 55 0 0 chr11 82700663 82700809 -39143047 - B1_Mus2 SINE Alu -1 146 1 4 1215 547 155 0 17 chr11 82700820 82700928 -39142928 - PB1D9 SINE Alu -43 104 1 4 1215 366 23 0 0 chr11 82700935 82700978 -39142878 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1215 1400 86 32 0 chr11 82701558 82701744 -39142112 - B2_Mm2 SINE B2 -2 193 2 4 1215 226 217 0 4 chr11 82702040 82702092 -39141764 + L2b LINE L2 3328 3379 -8 4 1215 1201 161 13 39 chr11 82702478 82702710 -39141146 + URR1A DNA MER1_type 1 226 0 4 1215 470 271 48 130 chr11 82702850 82703058 -39140798 + MER20 DNA MER1_type 28 218 -1 4 1215 804 77 0 0 chr11 82704264 82704381 -39139475 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1215 1050 186 82 0 chr11 82704631 82704825 -39139031 - B3 SINE B2 -5 211 2 4 1215 200 351 59 30 chr11 82704926 82705061 -39138795 - MIRb SINE MIR -84 184 46 4 1216 552 148 11 43 chr11 82706578 82706670 -39137186 - B3 SINE B2 -127 89 1 4 1216 210 37 0 0 chr11 82706682 82706709 -39137147 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1216 1114 75 0 0 chr11 82706709 82706843 -39137013 - B1_Mus1 SINE Alu -10 138 5 4 1216 1273 91 26 26 chr11 82706867 82706888 -39136968 - B2_Mm2 SINE B2 0 195 170 4 1216 1169 52 0 0 chr11 82706888 82707023 -39136833 + B1_Mus1 SINE Alu 2 136 -12 4 1216 251 71 24 0 chr11 82707024 82707066 -39136790 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1216 1273 91 26 26 chr11 82707066 82707233 -39136623 - B2_Mm2 SINE B2 -26 169 5 4 1216 748 233 200 0 chr11 82707256 82707436 -39136420 - B3 SINE B2 0 216 1 4 1216 1191 48 7 7 chr11 82707470 82707616 -39136240 + B1_Mus1 SINE Alu 3 148 0 4 1216 224 79 15 73 chr11 82707616 82707684 -39136172 + A-rich Low_complexity Low_complexity 6 69 0 4 1216 885 127 67 0 chr11 82708093 82708227 -39135629 - B1_Mur4 SINE Alu -7 143 1 4 1216 921 195 86 10 chr11 82708755 82708952 -39134904 + B3 SINE B2 1 212 -4 5 1216 331 100 0 20 chr11 82709230 82709281 -39134575 - RMER2 LTR ERV1 0 567 518 5 1216 763 103 92 38 chr11 82709269 82709400 -39134456 - RMER2 LTR ERV1 -429 138 1 5 1216 216 0 0 0 chr11 82709509 82709533 -39134323 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1216 1553 43 0 26 chr11 82709550 82709743 -39134113 - B2_Mm1a SINE B2 -4 189 2 5 1216 1482 206 25 83 chr11 82709749 82710146 -39133710 - ORR1D1 LTR MaLR 0 374 1 5 1216 180 0 0 0 chr11 82710176 82710196 -39133660 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1216 548 235 0 42 chr11 82710196 82710316 -39133540 - PB1D10 SINE Alu 0 117 3 5 1216 239 0 0 31 chr11 82710382 82710414 -39133442 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 5 1216 1238 41 0 13 chr11 82710414 82710563 -39133293 - B1_Mm SINE Alu 0 147 1 5 1216 236 346 78 16 chr11 82711712 82711841 -39132015 - MER5A1 DNA MER1_type 0 166 30 5 1216 1192 68 0 0 chr11 82712580 82712727 -39131129 + B1_Mus1 SINE Alu 2 148 0 5 1216 216 0 0 0 chr11 82714223 82714247 -39129609 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1216 247 212 58 43 chr11 82715891 82715960 -39127896 - MER5A1 DNA MER1_type 0 166 97 5 1216 236 30 0 29 chr11 82715999 82716033 -39127823 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1216 1002 131 0 0 chr11 82716037 82716182 -39127674 - B1_Mus1 SINE Alu -2 146 2 5 1216 327 211 184 0 chr11 82716212 82716288 -39127568 - B3A SINE B2 -38 160 71 5 1216 2024 83 128 0 chr11 82717170 82717460 -39126396 + ORR1A2 LTR MaLR 1 327 0 5 1216 260 220 85 0 chr11 82719404 82719463 -39124393 + MER5A1 DNA MER1_type 46 109 -57 5 1216 1163 90 0 0 chr11 82719556 82719700 -39124156 - B1_Mus1 SINE Alu -4 144 1 5 1216 845 232 171 0 chr11 82720254 82720435 -39123421 - B3 SINE B2 -3 213 2 5 1216 603 165 0 60 chr11 82720453 82720569 -39123287 - B1_Mur3 SINE Alu 0 149 41 5 1216 887 157 29 0 chr11 82720615 82720755 -39123101 - B1_Mur4 SINE Alu -6 144 1 5 1216 198 273 149 54 chr11 82721285 82721479 -39122377 + MIRb SINE MIR 16 229 -39 5 1216 204 305 0 48 chr11 82722050 82722112 -39121744 - MIRc SINE MIR -141 127 69 5 1216 507 157 0 0 chr11 82722213 82722302 -39121554 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1216 317 274 9 62 chr11 82722303 82722416 -39121440 - PB1D10 SINE Alu -10 107 1 5 1216 564 225 7 47 chr11 82722583 82722718 -39121138 + B1_Mus1 SINE Alu 6 135 -13 5 1216 240 35 0 0 chr11 82722718 82722747 -39121109 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 1216 564 225 7 47 chr11 82722747 82722760 -39121096 + B1_Mus1 SINE Alu 136 147 -1 5 1216 211 316 13 0 chr11 82722907 82722983 -39120873 - L2a LINE L2 0 3426 3350 5 1216 204 179 0 0 chr11 82723019 82723058 -39120798 + T-rich Low_complexity Low_complexity 1 39 0 5 1216 395 241 0 22 chr11 82723398 82723487 -39120369 + PB1 SINE Alu 12 98 -29 5 1216 300 53 0 0 chr11 82723763 82723801 -39120055 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 5 1216 338 393 51 5 chr11 82725542 82725739 -39118117 - MIRb SINE MIR -52 216 11 5 1216 210 128 0 0 chr11 82725775 82725814 -39118042 + (C)n Simple_repeat Simple_repeat 1 39 0 5 1216 577 219 49 0 chr11 82726211 82726334 -39117522 - B1_Mur4 SINE Alu -21 129 1 5 1216 252 0 0 0 chr11 82726561 82726589 -39117267 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1216 306 0 0 0 chr11 82727477 82727511 -39116345 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1216 1199 114 6 0 chr11 82727769 82727944 -39115912 - B2_Mm2 SINE B2 -18 177 2 5 1216 819 149 0 7 chr11 82728027 82728162 -39115694 - B1_Mur2 SINE Alu -6 143 10 5 1216 248 309 0 0 chr11 82728172 82728240 -39115616 + L2a LINE L2 3343 3410 -16 5 1216 237 108 0 0 chr11 82728243 82728280 -39115576 + (CAT)n Simple_repeat Simple_repeat 2 38 0 5 1216 291 246 5 18 chr11 82728871 82728962 -39114894 + PB1D10 SINE Alu 41 128 -21 5 1216 316 346 20 0 chr11 82729205 82729306 -39114550 + ID_B1 SINE B4 95 197 -27 5 1216 447 254 100 0 chr11 82729313 82729423 -39114433 + RSINE1 SINE B4 4 124 -41 5 1216 504 86 0 0 chr11 82729466 82729536 -39114320 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 5 1216 391 316 57 0 chr11 82729615 82729773 -39114083 - MER96B DNA hAT -248 169 3 5 1216 1412 123 5 5 chr11 82730170 82730390 -39113466 - ORR1B1 LTR MaLR 0 394 175 5 1216 393 217 19 9 chr11 82731585 82731692 -39112164 + L1MB3 LINE L1 6068 6175 -8 5 1216 21 57 0 0 chr11 82731820 82731855 -39112001 + AT_rich Low_complexity Low_complexity 1 35 0 5 1216 1142 37 0 0 chr11 82731865 82732001 -39111855 + B1_Mm SINE Alu 2 137 -10 5 1216 276 0 68 0 chr11 82732001 82732045 -39111811 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1216 204 40 0 0 chr11 82732062 82732087 -39111769 + (TGG)n Simple_repeat Simple_repeat 2 26 0 5 1216 772 125 17 0 chr11 82732087 82732207 -39111649 + B1_Mur3 SINE Alu 18 139 -10 5 1216 321 26 0 0 chr11 82732207 82732245 -39111611 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1216 299 179 15 0 chr11 82732659 82732726 -39111130 + GA-rich Low_complexity Low_complexity 3 70 0 5 1216 857 93 0 8 chr11 82732731 82732861 -39110995 + (GGGA)n Simple_repeat Simple_repeat 3 131 0 5 1216 705 24 0 0 chr11 82732862 82732945 -39110911 + (GGGAA)n Simple_repeat Simple_repeat 4 86 0 5 1216 946 321 100 81 chr11 82734268 82734996 -39108860 + MER21B LTR ERV1 5 746 -117 5 1216 666 301 58 64 chr11 82736441 82736768 -39107088 - MLT1F LTR MaLR -6 542 218 5 1216 2445 127 57 65 chr11 82737034 82737415 -39106441 - RLTR44C LTR ERVK -11 491 113 5 1216 1345 75 11 0 chr11 82737415 82737602 -39106254 + B2_Mm1t SINE B2 3 191 -2 5 1216 2445 127 57 65 chr11 82737602 82737715 -39106141 - RLTR44C LTR ERVK -390 112 1 5 1216 420 117 0 0 chr11 82737715 82737792 -39106064 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 5 1216 705 216 7 0 chr11 82737792 82737931 -39105925 - B1_Mur1 SINE Alu -8 141 2 5 1216 1255 106 6 0 chr11 82738179 82738359 -39105497 + B2_Mm2 SINE B2 1 181 -14 5 1216 263 294 58 23 chr11 82739209 82739296 -39104560 - MIRb SINE MIR -93 175 86 5 1216 216 250 125 0 chr11 82739697 82739761 -39104095 - L2c LINE L2 -23 3364 3293 5 1216 1619 153 101 13 chr11 82739790 82740108 -39103748 - ORR1B1 LTR MaLR -8 386 41 5 1216 483 174 43 21 chr11 82740120 82740214 -39103642 - MTC LTR MaLR 0 421 326 5 1216 940 190 72 34 chr11 82740183 82740390 -39103466 - MTC LTR MaLR -204 217 3 5 1216 1264 71 16 32 chr11 82740860 82741050 -39102806 - B2_Mm2 SINE B2 -7 188 2 5 1216 332 242 19 95 chr11 82741075 82741180 -39102676 - PB1D10 SINE Alu 0 117 21 5 1216 396 271 43 36 chr11 82741195 82741333 -39102523 - ID_B1 SINE B4 -2 222 84 5 1216 216 86 0 0 chr11 82741358 82741393 -39102463 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1216 322 261 0 0 chr11 82741558 82741627 -39102229 - B4A SINE B4 -223 69 1 5 1216 627 184 0 0 chr11 82741653 82741762 -39102094 - B1_Mur4 SINE Alu -31 119 11 5 1216 361 193 8 142 chr11 82741662 82741789 -39102067 - MT2B LTR ERVL -338 263 154 5 1216 200 268 5 111 chr11 82743761 82743950 -39099906 + (CCCCG)n Simple_repeat Simple_repeat 2 170 0 5 1216 259 208 17 72 chr11 82744141 82744322 -39099534 + (CTCG)n Simple_repeat Simple_repeat 2 172 0 5 1216 263 309 54 0 chr11 82744298 82744526 -39099330 + C-rich Low_complexity Low_complexity 1 240 0 5 1216 295 209 16 70 chr11 82744549 82744734 -39099122 + (CTCG)n Simple_repeat Simple_repeat 2 176 0 5 1216 206 280 40 29 chr11 82745037 82745210 -39098646 + C-rich Low_complexity Low_complexity 4 178 0 5 1216 254 215 17 72 chr11 82745628 82745996 -39097860 + (CTCG)n Simple_repeat Simple_repeat 1 347 0 5 1216 229 230 11 68 chr11 82746175 82746352 -39097504 + (CTCG)n Simple_repeat Simple_repeat 3 169 0 5 1216 227 224 28 61 chr11 82746427 82746695 -39097161 + (CTCG)n Simple_repeat Simple_repeat 1 259 0 5 1216 242 200 0 0 chr11 82747095 82747140 -39096716 - ID4 SINE ID -31 52 8 5 1216 438 20 0 0 chr11 82748371 82748422 -39095434 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1216 284 331 31 39 chr11 82748695 82748824 -39095032 + MIRb SINE MIR 71 198 -70 5 1216 860 0 10 0 chr11 82748902 82749002 -39094854 + (TTC)n Simple_repeat Simple_repeat 2 102 0 5 1216 506 262 7 28 chr11 82749024 82749169 -39094687 - B1F1 SINE Alu -6 143 2 5 1216 186 43 0 0 chr11 82749778 82749801 -39094055 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 5 1216 254 361 104 11 chr11 82750734 82750916 -39092940 - MLT1K LTR MaLR -27 568 370 5 1216 1453 166 128 18 chr11 82752058 82752395 -39091461 - ORR1D1 LTR MaLR 0 374 1 5 1216 234 0 0 0 chr11 82754406 82754432 -39089424 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1216 186 43 0 0 chr11 82754534 82754557 -39089299 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1216 185 152 30 0 chr11 82754686 82754719 -39089137 - MER5A DNA MER1_type -155 34 1 5 1216 24 0 0 0 chr11 82755442 82755466 -39088390 + AT_rich Low_complexity Low_complexity 1 24 0 5 1216 740 240 151 20 chr11 82755471 82755722 -39088134 + B4A SINE B4 1 284 -8 5 1216 222 128 0 0 chr11 82755799 82755838 -39088018 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 5 1216 902 219 70 0 chr11 82757314 82757515 -39086341 + B3 SINE B2 2 216 0 5 1216 552 89 11 11 chr11 82757524 82757615 -39086241 + URR1A DNA MER1_type 60 150 -76 5 1216 741 172 31 0 chr11 82757618 82757746 -39086110 + B1_Mus1 SINE Alu 2 133 -15 5 1216 1158 96 0 0 chr11 82757750 82757916 -39085940 + (GGAGAA)n Simple_repeat Simple_repeat 4 169 0 6 1216 342 292 18 0 chr11 82757998 82758111 -39085745 + PB1D10 SINE Alu 1 115 -2 6 1216 294 182 0 0 chr11 82758254 82758320 -39085536 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 6 1216 212 0 36 0 chr11 82758323 82758351 -39085505 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 6 1216 1159 49 0 0 chr11 82758775 82758919 -39084937 + B1_Mus2 SINE Alu 1 144 -3 6 1216 225 94 0 0 chr11 82758919 82758951 -39084905 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1216 225 69 0 0 chr11 82759384 82759413 -39084443 + Lx2 LINE L1 6734 6762 -235 6 1216 829 88 272 0 chr11 82759414 82759561 -39084295 - B2_Mm2 SINE B2 -8 187 1 6 1216 1327 107 88 21 chr11 82759561 82759799 -39084057 + Lx LINE L1 6401 6654 0 6 1216 559 286 7 13 chr11 82759805 82759953 -39083903 + B4 SINE B4 81 227 -65 6 1216 590 302 56 5 chr11 82759953 82760149 -39083707 + B3 SINE B2 1 206 -10 6 1216 418 167 0 0 chr11 82760278 82760350 -39083506 + B3 SINE B2 9 80 -136 6 1216 632 192 4 26 chr11 82760350 82760583 -39083273 + (CA)n Simple_repeat Simple_repeat 1 227 0 6 1216 486 278 45 56 chr11 82760623 82760821 -39083035 - B3A SINE B2 0 198 3 6 1216 521 307 152 23 chr11 82760824 82761087 -39082769 - L1MC1 LINE L1 -22 6311 6015 6 1216 999 76 28 0 chr11 82761495 82761639 -39082217 - B1_Mur3 SINE Alu 0 149 2 6 1216 876 246 24 0 chr11 82761760 82761971 -39081885 - B3 SINE B2 0 216 1 6 1216 25 0 0 0 chr11 82762149 82762174 -39081682 + AT_rich Low_complexity Low_complexity 1 25 0 6 1216 2009 249 2 69 chr11 82762208 82762747 -39081109 - Lx6 LINE L1 -40 7420 6918 6 1216 1139 86 58 0 chr11 82763423 82763597 -39080259 - B2_Mm1t SINE B2 -9 184 1 6 1216 556 297 67 22 chr11 82764036 82764215 -39079641 + B4 SINE B4 106 292 0 6 1216 667 19 123 0 chr11 82765059 82765165 -39078691 + L1Md_F3 LINE L1 6464 6582 -2 6 1216 486 0 0 0 chr11 82766334 82766388 -39077468 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1216 651 227 8 0 chr11 82766968 82767096 -39076760 + B1_Mur1 SINE Alu 16 144 -5 6 1216 216 86 0 0 chr11 82767151 82767186 -39076670 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1216 662 156 11 8 chr11 82767234 82767360 -39076496 - Lx4B LINE L1 -219 6754 6626 6 1216 809 240 80 0 chr11 82767431 82767631 -39076225 + B3 SINE B2 1 216 0 6 1216 871 201 75 0 chr11 82767652 82767851 -39076005 - B3 SINE B2 -1 215 2 6 1216 312 221 144 44 chr11 82767991 82768081 -39075775 + MER89 LTR ERV1 229 327 -232 6 1216 292 298 97 0 chr11 82768093 82768217 -39075639 + MER89 LTR ERV1 424 559 0 6 1216 473 263 61 49 chr11 82768572 82768736 -39075120 + MER89-int LTR ERV1 451 616 -6185 6 1216 189 0 0 0 chr11 82768834 82768855 -39075001 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1216 246 192 0 0 chr11 82769045 82769097 -39074759 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1216 462 239 154 0 chr11 82769428 82769545 -39074311 + RSINE1 SINE B4 6 140 -25 6 1216 197 164 40 14 chr11 82770818 82770892 -39072964 + G-rich Low_complexity Low_complexity 1 76 0 6 1216 372 209 101 37 chr11 82771087 82771196 -39072660 - PB1D10 SINE Alu 0 117 2 6 1216 881 234 39 0 chr11 82771361 82771566 -39072290 - B3 SINE B2 0 216 4 6 1216 228 260 38 57 chr11 82771625 82771731 -39072125 - MamRep1161 DNA TcMar -420 537 434 6 1216 411 136 45 0 chr11 82771780 82771868 -39071988 + Lx2 LINE L1 6906 6997 0 6 1216 248 296 0 0 chr11 82772012 82772083 -39071773 + B2_Mm2 SINE B2 2 72 -123 6 1216 620 162 0 2 chr11 82772411 82772519 -39071337 + B3 SINE B2 1 106 -89 6 1216 904 41 25 0 chr11 82772772 82772893 -39070963 - B1_Mus2 SINE Alu -13 134 11 6 1216 441 196 41 82 chr11 82772794 82772916 -39070940 - MT2B LTR ERVL -337 264 148 6 1216 1281 165 143 64 chr11 82773084 82773215 -39070641 - RLTR30 LTR ERV1 -9 370 233 6 1216 219 69 0 0 chr11 82773215 82773244 -39070612 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 6 1216 1281 165 143 64 chr11 82773244 82773455 -39070401 - RLTR30 LTR ERV1 -147 232 2 6 1216 321 26 0 0 chr11 82775394 82775432 -39068424 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1216 240 35 0 0 chr11 82775432 82775460 -39068396 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1216 963 40 0 0 chr11 82776058 82776182 -39067674 - B1_Mus2 SINE Alu -23 124 1 6 1216 895 158 7 0 chr11 82776689 82776835 -39067021 + B1_Mus1 SINE Alu 1 147 -1 6 1216 384 77 0 0 chr11 82776841 82776893 -39066963 + (CAAAC)n Simple_repeat Simple_repeat 5 56 0 6 1216 616 179 18 0 chr11 82776936 82777048 -39066808 + B1_Mur4 SINE Alu 1 114 -36 6 1216 412 276 88 15 chr11 82777048 82777068 -39066788 + B4 SINE B4 86 227 -65 6 1216 802 136 0 0 chr11 82777131 82777249 -39066607 + B1_Mur1 SINE Alu 24 141 -8 6 1216 1440 52 0 5 chr11 82777279 82777438 -39066418 + B2_Mm1a SINE B2 2 160 -33 6 1216 207 0 0 0 chr11 82777438 82777461 -39066395 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1216 1440 52 0 5 chr11 82777461 82777494 -39066362 + B2_Mm1a SINE B2 161 193 0 6 1216 22 0 0 0 chr11 82778311 82778333 -39065523 + AT_rich Low_complexity Low_complexity 1 22 0 6 1216 324 239 228 44 chr11 82778576 82778690 -39065166 + B4 SINE B4 2 140 -152 6 1216 282 215 86 25 chr11 82778686 82778767 -39065089 + MTC LTR MaLR 276 361 -60 6 1216 2180 77 42 71 chr11 82778767 82779104 -39064752 + ORR1A2 LTR MaLR 1 327 0 6 1216 379 294 72 39 chr11 82779315 82779620 -39064236 + RMER10A LTR ERVL 127 441 -1 6 1216 636 106 0 0 chr11 82779623 82779717 -39064139 + (TTCTC)n Simple_repeat Simple_repeat 4 97 0 6 1216 746 29 19 0 chr11 82779733 82779836 -39064020 - B1_Mm SINE Alu 0 147 43 6 1216 255 208 95 27 chr11 82779775 82779849 -39064007 - RLTR25B LTR ERVK -519 509 431 6 1216 610 165 50 57 chr11 82780210 82780270 -39063586 - ORR1D1 LTR MaLR 0 374 308 6 1216 387 0 0 0 chr11 82780270 82780313 -39063543 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1216 610 165 50 57 chr11 82780313 82780393 -39063463 - ORR1D1 LTR MaLR -67 307 235 6 1216 1175 171 75 0 chr11 82780395 82780623 -39063233 - RMER19B LTR ERVK 0 902 658 6 1216 3466 160 21 92 chr11 82781053 82781768 -39062088 - RMER19B LTR ERVK -238 664 1 6 1216 499 245 120 17 chr11 82782550 82782743 -39061113 + RLTR19-int LTR ERVK 2687 2883 -3254 6 1216 471 251 50 164 chr11 82782782 82783159 -39060697 + RLTR19-int LTR ERVK 2861 3194 -2943 6 1216 281 132 88 70 chr11 82784515 82784572 -39059284 + RLTR19-int LTR ERVK 3189 3246 -2891 6 1216 501 17 0 0 chr11 82785698 82785756 -39058100 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1216 38 39 0 0 chr11 82786238 82786290 -39057566 + AT_rich Low_complexity Low_complexity 1 52 0 6 1216 877 274 114 60 chr11 82787093 82787496 -39056360 + RLTR26 LTR ERVK 1 425 -217 6 1216 201 94 0 0 chr11 82787932 82787964 -39055892 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1216 865 171 108 82 chr11 82788310 82788578 -39055278 + RLTR19-int LTR ERVK 4016 4290 -1847 6 1216 2177 252 119 90 chr11 82788597 82789853 -39054003 + RMER12 LTR ERVK 1 1293 -29 6 1216 301 241 34 11 chr11 82789887 82789975 -39053881 + RLTR19-int LTR ERVK 4291 4380 -1757 6 1216 189 0 0 0 chr11 82790471 82790492 -39053364 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1216 327 136 75 15 chr11 82790952 82791019 -39052837 - ORR1D1 LTR MaLR -150 224 154 6 1216 234 0 0 0 chr11 82791019 82791045 -39052811 + (TCC)n Simple_repeat Simple_repeat 3 28 0 6 1216 1720 110 23 4 chr11 82791243 82791499 -39052357 - Lx3_Mus LINE L1 0 7009 6749 6 1216 393 320 0 24 chr11 82791671 82791796 -39052060 + ID_B1 SINE B4 102 223 -1 6 1216 6132 151 31 3 chr11 82791898 82793661 -39050195 - Lx LINE L1 0 6654 4845 6 1216 3465 85 21 25 chr11 82793654 82794285 -39049571 - L1VL4 LINE L1 -2520 1039 413 6 1216 218 264 0 0 chr11 82796518 82796571 -39047285 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1216 546 119 0 0 chr11 82796584 82796668 -39047188 + (CATA)n Simple_repeat Simple_repeat 4 87 0 6 1216 212 167 24 0 chr11 82796981 82797023 -39046833 + (CCCG)n Simple_repeat Simple_repeat 2 44 0 6 1216 978 219 29 0 chr11 82798656 82798866 -39044990 + B3 SINE B2 1 216 0 6 1216 1010 216 50 47 chr11 82799094 82799371 -39044485 + RodERV21-int LTR ERV1 898 1175 -3816 6 1216 925 241 62 40 chr11 82799419 82799695 -39044161 + RodERV21-int LTR ERV1 4487 4768 -223 6 1216 785 226 195 23 chr11 82799697 82800084 -39043772 - RMER6B LTR ERVK -1 460 7 6 1216 761 211 13 39 chr11 82800466 82800619 -39043237 + B1_Mur4 SINE Alu 2 150 0 6 1216 1033 101 0 0 chr11 82802438 82802576 -39041280 + B1_Mus1 SINE Alu 2 139 -9 6 1216 207 100 0 0 chr11 82802591 82802621 -39041235 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1216 1636 153 3 103 chr11 82802987 82803345 -39040511 + RLTRETN_Mm LTR ERVK 1 322 0 6 1216 864 223 58 0 chr11 82803472 82803660 -39040196 - B3 SINE B2 -16 200 2 6 1216 273 297 104 73 chr11 82805866 82805930 -39037926 + L1MEf LINE L1 1416 1472 -4728 6 1216 450 0 0 0 chr11 82805930 82805980 -39037876 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1216 273 297 104 73 chr11 82805980 82806271 -39037585 + L1MEf LINE L1 1473 1782 -4418 6 1216 394 305 93 0 chr11 82806273 82806424 -39037432 + B3A SINE B2 1 165 -33 6 1216 3429 31 15 0 chr11 82806435 82806825 -39037031 + MTA_Mm LTR MaLR 1 396 0 6 1216 319 307 25 38 chr11 82806832 82806991 -39036865 + RLTR12B LTR ERVK 1 157 -371 6 1216 802 289 36 11 chr11 82807088 82807364 -39036492 - RLTR22_Mur LTR ERVK -1043 805 523 6 1216 251 114 23 0 chr11 82807682 82807726 -39036130 + (CATA)n Simple_repeat Simple_repeat 3 47 0 6 1216 1151 75 0 0 chr11 82807864 82808011 -39035845 + B1_Mus1 SINE Alu 1 147 -1 6 1216 252 0 0 0 chr11 82808020 82808048 -39035808 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 6 1216 1850 179 28 11 chr11 82808118 82808479 -39035377 + ORR1B2 LTR MaLR 1 367 0 6 1216 639 0 0 0 chr11 82808546 82808617 -39035239 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 6 1216 5750 138 89 63 chr11 82808617 82809924 -39033932 - RMER17C-int LTR ERVK -709 2529 1276 7 1216 499 159 0 11 chr11 82810337 82810426 -39033430 - 7SLRNA srpRNA srpRNA -47 267 180 7 1216 303 164 73 15 chr11 82810826 82810894 -39032962 - ORR1D1 LTR MaLR -150 224 153 7 1216 1445 55 0 9 chr11 82810906 82811234 -39032622 + (TTC)n Simple_repeat Simple_repeat 1 325 0 7 1216 1319 45 6 0 chr11 82811256 82811435 -39032421 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1216 819 179 0 0 chr11 82811462 82811641 -39032215 + CT-rich Low_complexity Low_complexity 2 180 0 7 1216 225 275 38 84 chr11 82811971 82812102 -39031754 - YREP_Mm Unknown Unknown -1502 310 186 7 1216 438 292 8 0 chr11 82811989 82812109 -39031747 + ID_B1 SINE B4 102 222 -2 7 1216 1168 132 11 11 chr11 82812218 82812401 -39031455 - B2_Mm1t SINE B2 -9 184 2 7 1216 6102 156 29 14 chr11 82812420 82813811 -39030045 - Lx LINE L1 0 6654 5233 7 1216 4258 138 51 94 chr11 82813811 82814758 -39029098 + RMER17A2 LTR ERVK 1 906 0 7 1216 5591 171 20 18 chr11 82814758 82815154 -39028702 - Lx LINE L1 -654 5232 4848 7 1216 3232 85 11 14 chr11 82815147 82815419 -39028437 - L1VL4 LINE L1 -2520 1039 764 7 1216 711 88 0 0 chr11 82815419 82815532 -39028324 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 7 1216 671 12 0 0 chr11 82815538 82815624 -39028232 - L1Md_F2 LINE L1 -14 6568 6483 7 1216 940 145 44 88 chr11 82815626 82815830 -39028026 - B2_Mm2 SINE B2 0 195 1 7 1216 3232 121 25 48 chr11 82815830 82816187 -39027669 - L1VL4 LINE L1 -5539 763 413 7 1216 417 239 0 9 chr11 82818424 82818538 -39025318 + (TCTCTG)n Simple_repeat Simple_repeat 6 118 0 7 1216 356 209 65 95 chr11 82818820 82818989 -39024867 + RNLTR23 LTR ERVK 479 642 0 7 1216 1272 224 52 9 chr11 82819180 82819505 -39024351 + RNERVK23-int LTR ERVK 180 518 -7699 7 1216 389 262 0 0 chr11 82820300 82820384 -39023472 + RNERVK23-int LTR ERVK 3343 3426 -4791 7 1216 5122 241 14 1 chr11 82820374 82821476 -39022380 + RNERVK23-int LTR ERVK 4059 5175 -3042 7 1216 7092 275 51 36 chr11 82821475 82823235 -39020621 + RNERVK23-int LTR ERVK 5053 6832 -1385 7 1216 1488 145 36 72 chr11 82823235 82823569 -39020287 + RLTRETN_Mm LTR ERVK 1 322 0 7 1216 7092 275 51 36 chr11 82823569 82824334 -39019522 + RNERVK23-int LTR ERVK 6833 7618 -599 7 1216 840 92 0 0 chr11 82824334 82824453 -39019403 + (GA)n Simple_repeat Simple_repeat 2 120 0 7 1216 7092 254 24 19 chr11 82824453 82824605 -39019251 + RNERVK23-int LTR ERVK 7619 7814 -403 7 1216 451 233 30 54 chr11 82825328 82825496 -39018360 + RNLTR23 LTR ERVK 479 642 0 7 1216 637 219 122 106 chr11 82825508 82825819 -39018037 + Lx7 LINE L1 7365 7680 -16 7 1216 230 111 0 0 chr11 82825819 82825855 -39018001 + Lx7 LINE L1 7660 7695 -1 7 1216 28 0 0 0 chr11 82825856 82825884 -39017972 + AT_rich Low_complexity Low_complexity 1 28 0 7 1216 28 29 0 0 chr11 82826147 82826182 -39017674 + AT_rich Low_complexity Low_complexity 1 35 0 7 1216 850 216 72 0 chr11 82827477 82827671 -39016185 + B3 SINE B2 1 208 -8 7 1216 916 217 62 47 chr11 82827918 82828194 -39015662 + RodERV21-int LTR ERV1 896 1175 -3816 7 1216 541 299 48 56 chr11 82828255 82828610 -39015246 + RLTR10D LTR ERVK 8 359 0 7 1216 812 206 202 23 chr11 82828871 82829256 -39014600 - RMER6B LTR ERVK -1 460 7 7 1216 623 247 20 7 chr11 82829883 82830030 -39013826 + B1_Mur4 SINE Alu 2 150 0 7 1216 912 114 15 0 chr11 82831852 82831984 -39011872 + B1_Mus1 SINE Alu 2 135 -13 7 1216 303 104 0 0 chr11 82832170 82832218 -39011638 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1216 704 256 60 0 chr11 82832462 82832630 -39011226 - B3 SINE B2 -34 182 5 7 1216 5377 132 123 11 chr11 82834539 82835525 -39008331 - RMER17C-int LTR ERVK -867 2371 1276 7 1216 499 159 0 11 chr11 82835938 82836027 -39007829 - 7SLRNA srpRNA srpRNA -47 267 180 7 1216 303 164 73 15 chr11 82836427 82836495 -39007361 - ORR1D1 LTR MaLR -150 224 153 7 1216 1335 50 0 0 chr11 82836507 82836687 -39007169 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1216 421 158 0 19 chr11 82836690 82836747 -39007109 + polypyrimidine Low_complexity Low_complexity 46 102 0 7 1216 933 145 0 0 chr11 82836747 82836926 -39006930 + (TTC)n Simple_repeat Simple_repeat 2 180 0 7 1216 421 158 0 19 chr11 82836926 82836971 -39006885 + polypyrimidine Low_complexity Low_complexity 2 45 0 7 1216 399 308 8 0 chr11 82837319 82837439 -39006417 + ID_B1 SINE B4 102 222 -2 7 1217 1146 147 6 0 chr11 82837556 82837733 -39006123 - B2_Mm1t SINE B2 -14 179 2 7 1217 6163 152 29 12 chr11 82837754 82839145 -39004711 - Lx LINE L1 0 6654 5229 7 1217 4061 141 91 95 chr11 82839145 82840054 -39003802 + RMER17A2 LTR ERVK 1 906 0 7 1217 5661 168 22 9 chr11 82840054 82840440 -39003416 - Lx LINE L1 -655 5228 4845 7 1217 1636 54 0 0 chr11 82840433 82840709 -39003147 - L1VL4 LINE L1 -2520 1039 764 7 1217 180 0 0 0 chr11 82840712 82840732 -39003124 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1217 1050 111 60 11 chr11 82840741 82840924 -39002932 - B2_Mm2 SINE B2 -3 192 1 7 1217 204 40 0 0 chr11 82840928 82840953 -39002903 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1217 1270 205 82 37 chr11 82841530 82841931 -39001925 - L1VL4 LINE L1 -5471 831 413 7 1217 638 272 78 46 chr11 82844103 82844190 -38999666 + Lx7 LINE L1 7282 7363 -333 7 1217 273 98 0 0 chr11 82844190 82844231 -38999625 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1217 638 272 78 46 chr11 82844231 82844516 -38999340 + Lx7 LINE L1 7364 7666 -30 7 1217 854 74 8 0 chr11 82844516 82844637 -38999219 + B1_Mus1 SINE Alu 14 135 -13 7 1217 468 0 0 0 chr11 82844637 82844689 -38999167 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 7 1217 23 0 0 0 chr11 82844712 82844735 -38999121 + AT_rich Low_complexity Low_complexity 1 23 0 7 1217 820 238 48 0 chr11 82846285 82846491 -38997365 + B3 SINE B2 1 216 0 7 1217 959 227 54 47 chr11 82846718 82846995 -38996861 + RodERV21-int LTR ERV1 897 1175 -3816 7 1217 1016 248 44 7 chr11 82847043 82847315 -38996541 + RodERV21-int LTR ERV1 4487 4768 -223 7 1217 831 225 197 25 chr11 82847315 82847703 -38996153 - RMER6B LTR ERVK 0 461 7 7 1217 716 219 22 0 chr11 82848350 82848487 -38995369 + B1_Mur4 SINE Alu 3 142 -8 7 1217 21 36 0 0 chr11 82850857 82850885 -38992971 + AT_rich Low_complexity Low_complexity 1 28 0 7 1217 939 146 0 0 chr11 82850933 82851070 -38992786 + B1_Mus1 SINE Alu 2 138 -10 7 1217 1313 84 28 6 chr11 82851140 82851319 -38992537 + B2_Mm2 SINE B2 1 183 -12 7 1217 1200 48 24 0 chr11 82851319 82851486 -38992370 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 7 1217 558 0 0 0 chr11 82851590 82851652 -38992204 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1217 760 226 60 0 chr11 82851891 82852059 -38991797 - B3 SINE B2 -34 182 5 7 1217 1242 98 5 40 chr11 82852656 82852857 -38990999 - B2_Mm2 SINE B2 -1 194 1 7 1217 286 72 0 67 chr11 82852971 82853031 -38990825 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 7 1217 1004 100 18 18 chr11 82853166 82853329 -38990527 - L1_Mus3 LINE L1 -15 6623 6461 7 1217 2049 148 22 11 chr11 82853953 82854314 -38989542 + ORR1B2 LTR MaLR 1 365 -2 7 1217 450 0 0 0 chr11 82854380 82854430 -38989426 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 7 1217 189 0 0 0 chr11 82854430 82854451 -38989405 + (TTA)n Simple_repeat Simple_repeat 3 23 0 7 1217 248 171 49 0 chr11 82854462 82854544 -38989312 + (TATG)n Simple_repeat Simple_repeat 1 86 0 7 1217 702 87 0 0 chr11 82854556 82854659 -38989197 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 7 1217 563 291 60 92 chr11 82854806 82855224 -38988632 - L1M2 LINE L1 -439 5408 5005 7 1217 276 30 0 0 chr11 82855224 82855257 -38988599 + (TATG)n Simple_repeat Simple_repeat 2 34 0 7 1217 563 295 73 50 chr11 82855257 82855342 -38988514 - L1M2 LINE L1 -1079 5064 4975 7 1217 207 0 0 0 chr11 82855342 82855365 -38988491 + (TGG)n Simple_repeat Simple_repeat 3 25 0 7 1217 563 295 73 50 chr11 82855365 82855453 -38988403 - L1M2 LINE L1 -1169 4974 4892 7 1217 959 80 0 7 chr11 82855454 82855593 -38988263 + (TTCTCC)n Simple_repeat Simple_repeat 4 141 0 7 1217 621 40 0 0 chr11 82855594 82855670 -38988186 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 7 1217 246 105 0 0 chr11 82855671 82855709 -38988147 + (TCC)n Simple_repeat Simple_repeat 1 38 0 7 1217 227 132 0 0 chr11 82855739 82855777 -38988079 - B1_Mur3 SINE Alu -39 110 73 7 1217 222 37 0 0 chr11 82855821 82855848 -38988008 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 7 1217 477 304 8 1 chr11 82855852 82856023 -38987833 - L1M2 LINE L1 -1301 4842 4636 7 1217 2275 81 52 0 chr11 82856034 82856343 -38987513 - ORR1A3 LTR MaLR -1 325 1 7 1217 716 276 0 12 chr11 82856764 82856929 -38986927 + B3 SINE B2 1 163 -53 7 1217 269 137 0 40 chr11 82857145 82857221 -38986635 + T-rich Low_complexity Low_complexity 1 73 0 7 1217 1057 83 7 0 chr11 82857226 82857371 -38986485 - B1_Mm SINE Alu 0 147 2 7 1217 1037 92 0 0 chr11 82857825 82857966 -38985890 - L1_Mus3 LINE L1 -314 6322 6182 7 1217 2015 103 13 7 chr11 82857966 82858270 -38985586 + L1_Mus3 LINE L1 6330 6635 -3 7 1217 790 167 32 43 chr11 82858280 82858320 -38985536 + B2_Mm2 SINE B2 2 41 -154 7 1217 3280 60 0 10 chr11 82858320 82858724 -38985132 - MTB LTR MaLR 0 400 1 7 1217 790 167 32 43 chr11 82858724 82858871 -38984985 + B2_Mm2 SINE B2 42 187 -8 7 1217 335 318 58 69 chr11 82859277 82859627 -38984229 + RNERVK23-int LTR ERVK 5106 5377 -2840 7 1217 533 15 15 0 chr11 82860121 82860187 -38983669 + (CATAA)n Simple_repeat Simple_repeat 4 70 0 7 1217 10603 69 8 8 chr11 82861723 82863884 -38979972 + L1VL2 LINE L1 217 2379 -1236 7 1217 4489 14 2 0 chr11 82863884 82864376 -38979480 + MT2_Mm LTR ERVL 1 493 0 7 1217 41408 16 14 0 chr11 82864376 82869663 -38974193 + MERVL-int LTR ERVL 1 5360 -125 7 1217 344 179 46 35 chr11 82869663 82869750 -38974106 + ORR1A3-int LTR MaLR 553 640 -1323 7 1217 321 0 0 0 chr11 82869750 82869788 -38974068 + MERVL-int LTR ERVL 5448 5485 0 7 1217 4489 14 2 0 chr11 82869788 82870280 -38973576 + MT2_Mm LTR ERVL 1 493 0 7 1217 4117 81 30 2 chr11 82870280 82870872 -38972984 + MusHAL1 LINE L1 1472 2080 -632 7 1217 29 28 0 0 chr11 82871034 82871070 -38972786 + AT_rich Low_complexity Low_complexity 1 36 0 7 1217 28 48 0 0 chr11 82871185 82871227 -38972629 + AT_rich Low_complexity Low_complexity 1 42 0 7 1217 23 33 0 0 chr11 82871450 82871480 -38972376 + AT_rich Low_complexity Low_complexity 1 30 0 7 1217 517 131 0 23 chr11 82871732 82871818 -38972038 + B1_Mur1 SINE Alu 66 149 0 7 1217 188 88 59 0 chr11 82871818 82871852 -38972004 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 7 1217 261 283 47 151 chr11 82871934 82872007 -38971849 + L1M4 LINE L1 2840 2904 -3239 7 1217 644 174 368 0 chr11 82872007 82872162 -38971694 + B3 SINE B2 5 216 0 7 1217 345 264 60 45 chr11 82872162 82872313 -38971543 + L1M4 LINE L1 2894 3046 -3100 7 1217 1124 56 14 0 chr11 82872313 82872457 -38971399 + B1_Mus2 SINE Alu 2 147 0 8 1217 345 263 61 40 chr11 82872457 82872510 -38971346 + L1M4 LINE L1 3047 3095 -3051 7 1217 722 159 181 50 chr11 82872528 82872805 -38971051 + Lx9 LINE L1 7325 7637 -7 8 1217 536 298 63 121 chr11 82872874 82872920 -38970936 + L1M2 LINE L1 3262 3310 -2833 8 1217 793 174 0 63 chr11 82872920 82873079 -38970777 + B1_Mur2 SINE Alu 1 149 0 8 1217 536 298 63 121 chr11 82873079 82873370 -38970486 + L1M2 LINE L1 3311 3563 -2580 8 1217 387 105 0 0 chr11 82873370 82873427 -38970429 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1217 536 298 63 121 chr11 82873427 82873627 -38970229 + L1M2 LINE L1 3564 3769 -2374 8 1217 605 188 7 0 chr11 82873648 82873792 -38970064 + (CA)n Simple_repeat Simple_repeat 2 146 0 8 1217 896 242 117 62 chr11 82874819 82875133 -38968723 - RMER10A LTR ERVL 0 442 100 8 1217 4315 93 9 2 chr11 82875133 82875713 -38968143 + MT2B2 LTR ERVL 1 584 0 8 1217 896 242 117 62 chr11 82875713 82875817 -38968039 - RMER10A LTR ERVL -343 99 1 8 1217 298 323 8 8 chr11 82875915 82876040 -38967816 + CT-rich Low_complexity Low_complexity 1 125 0 8 1217 757 177 187 12 chr11 82876181 82876438 -38967418 - RMER10B LTR ERVL -92 306 5 8 1217 286 143 0 52 chr11 82877354 82877450 -38966406 + GA-rich Low_complexity Low_complexity 1 91 0 8 1217 396 115 0 0 chr11 82878000 82878061 -38965795 - B2_Mm2 SINE B2 -133 62 2 8 1217 219 36 0 0 chr11 82878063 82878091 -38965765 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 8 1217 407 126 112 2 chr11 82878097 82878219 -38965637 - Lx LINE L1 -4 6650 6502 8 1217 207 343 0 19 chr11 82879305 82879409 -38964447 + GA-rich Low_complexity Low_complexity 1 102 0 8 1217 219 132 36 54 chr11 82879888 82879944 -38963912 + G-rich Low_complexity Low_complexity 1 55 0 8 1217 2286 159 82 13 chr11 82880505 82880971 -38962885 - RLTR11A LTR ERVK -30 498 1 8 1217 1581 186 180 17 chr11 82880988 82881349 -38962507 + MTC LTR MaLR 1 420 -1 8 1217 626 195 513 14 chr11 82881351 82881446 -38962410 - ORR1D1 LTR MaLR -42 332 190 8 1217 198 0 0 0 chr11 82881446 82881468 -38962388 + (GA)n Simple_repeat Simple_repeat 2 23 0 8 1217 691 187 19 14 chr11 82881468 82881610 -38962246 - ORR1D1 LTR MaLR -181 189 28 8 1217 1053 176 45 0 chr11 82881877 82882076 -38961780 + B3 SINE B2 2 209 -7 8 1217 1327 106 11 0 chr11 82882523 82882711 -38961145 - B2_Mm1t SINE B2 -3 190 1 8 1217 363 134 15 15 chr11 82883858 82883926 -38959930 + B2_Mm2 SINE B2 2 69 -126 8 1217 494 100 0 70 chr11 82884009 82884095 -38959761 + RLTR13B4 LTR ERVK 724 803 0 8 1217 637 192 131 30 chr11 82884095 82884294 -38959562 + RLTR9E LTR ERVK 191 409 0 8 1217 491 203 103 14 chr11 82884298 82884443 -38959413 + MTC LTR MaLR 259 416 -5 8 1217 452 54 18 0 chr11 82884447 82884503 -38959353 + L1_Mus2 LINE L1 6341 6397 -169 8 1217 4547 8 0 0 chr11 82884503 82884996 -38958860 - MT2_Mm LTR ERVL 0 493 1 8 1217 321 0 0 0 chr11 82884996 82885034 -38958822 - MERVL-int LTR ERVL 0 5485 5448 8 1217 364 97 26 53 chr11 82885034 82885110 -38958746 - ORR1D1-int LTR MaLR -1323 640 567 8 1217 38045 15 11 0 chr11 82885110 82890443 -38953413 - MERVL-int LTR ERVL -114 5371 1 8 1217 4547 8 0 0 chr11 82890443 82890936 -38952920 - MT2_Mm LTR ERVL 0 493 1 8 1217 1088 101 30 0 chr11 82890936 82891105 -38952751 + L1_Mus2 LINE L1 6393 6566 0 8 1217 293 299 125 8 chr11 82891391 82891519 -38952337 + ID_B1 SINE B4 80 222 -2 8 1217 486 145 0 0 chr11 82892624 82892707 -38951149 - RMER1A Other Other -1 1029 947 8 1217 1251 122 16 16 chr11 82892723 82892915 -38950941 + B2_Mm1t SINE B2 2 193 0 8 1217 2157 111 8 39 chr11 82893284 82893648 -38950208 - RLTR8 LTR ERVK -12 353 1 8 1217 6379 74 15 5 chr11 82893648 82894667 -38949189 - SRV_MM-int LTR ERVK 0 6167 5019 8 1217 2049 45 0 4 chr11 82894659 82894903 -38948953 - SRV_MM-int LTR ERVK -3514 2653 2411 8 1217 9883 79 13 3 chr11 82894888 82896157 -38947699 - SRV_MM-int LTR ERVK -4196 1971 690 8 1217 3330 76 14 2 chr11 82896186 82896608 -38947248 - SRV_MM-int LTR ERVK -5440 727 301 8 1217 650 252 56 28 chr11 82896933 82897149 -38946707 + LTRIS4 LTR ERV1 286 507 0 8 1217 2171 92 38 0 chr11 82897149 82897441 -38946415 - SRV_MM-int LTR ERVK -5863 304 2 8 1217 382 167 144 0 chr11 82897442 82897477 -38946379 - RLTR8 LTR ERVK 0 365 331 8 1217 486 0 0 0 chr11 82897477 82897531 -38946325 + (GA)n Simple_repeat Simple_repeat 2 55 0 8 1217 382 167 144 0 chr11 82897531 82897585 -38946271 - RLTR8 LTR ERVK -35 330 265 8 1217 3290 110 76 40 chr11 82897710 82898329 -38945527 + RMER17A2 LTR ERVK 1 624 -282 8 1217 917 305 56 26 chr11 82899067 82899407 -38944449 + RodERV21-int LTR ERV1 729 1078 -3913 8 1217 633 277 74 71 chr11 82899477 82899803 -38944053 + RodERV21-int LTR ERV1 1088 1414 -3577 8 1217 1375 195 30 91 chr11 82899828 82900167 -38943689 + RLTR41 LTR ERV1 62 379 -67 8 1217 2202 230 30 48 chr11 82900184 82900742 -38943114 + RodERV21-int LTR ERV1 2171 2718 -2273 8 1217 656 321 39 53 chr11 82900864 82901357 -38942499 + RodERV21-int LTR ERV1 3586 4071 -3020 8 1217 299 366 10 10 chr11 82901608 82901812 -38942044 + MER52-int LTR ERV1 3470 3673 -3928 8 1217 201 24 98 0 chr11 82901852 82901893 -38941963 + (CAAAAA)n Simple_repeat Simple_repeat 1 45 0 8 1217 4474 16 0 0 chr11 82901908 82902401 -38941455 - MT2_Mm LTR ERVL 0 493 1 8 1217 36232 65 4 4 chr11 82902471 82908710 -38935146 - L1Md_F2 LINE L1 -2 6583 250 8 1217 2411 164 28 40 chr11 82908736 82909161 -38934695 - RLTR9B2 LTR ERVK 0 420 1 8 1217 385 325 31 31 chr11 82909374 82909649 -38934207 + MER52-int LTR ERV1 4870 5127 -1964 8 1217 3497 189 39 41 chr11 82910814 82911671 -38932185 + RLTR13A LTR ERVK 1 855 0 8 1217 1250 88 16 27 chr11 82911675 82911861 -38931995 + ETnERV3-int LTR ERVK 3 186 -5622 8 1217 38407 94 25 23 chr11 82912026 82915984 -38927872 + ETnERV3-int LTR ERVK 186 3976 -1832 8 1217 306 0 0 0 chr11 82915984 82916018 -38927838 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 8 1217 38407 89 22 23 chr11 82916018 82917778 -38926078 + ETnERV3-int LTR ERVK 3977 5800 -8 8 1217 3535 183 40 43 chr11 82917786 82918644 -38925212 + RLTR13A LTR ERVK 1 855 0 8 1217 2906 334 52 44 chr11 82918647 82918926 -38924930 + RodERV21-int LTR ERV1 2977 3245 -1746 8 1217 3000 98 48 5 chr11 82918926 82919345 -38924511 - RLTR9B LTR ERVK 0 437 1 8 1217 2906 334 52 44 chr11 82919345 82920867 -38922989 + RodERV21-int LTR ERV1 3246 4793 -198 8 1217 741 319 117 0 chr11 82921324 82921606 -38922250 - RMER1B Other Other -745 321 7 8 1217 348 269 9 55 chr11 82921896 82922006 -38921850 + B3 SINE B2 105 209 -7 8 1217 2470 87 63 0 chr11 82922171 82922518 -38921338 - L1_Mus3 LINE L1 -2 6636 6268 8 1217 5630 66 12 6 chr11 82922518 82923569 -38920287 + L1_Mus3 LINE L1 5223 6285 -353 8 1217 561 311 68 31 chr11 82923761 82923866 -38919990 - MTEb LTR MaLR -86 293 191 8 1217 1243 119 5 5 chr11 82923866 82924051 -38919805 - B2_Mm1a SINE B2 -8 185 1 8 1217 561 270 70 15 chr11 82924051 82924229 -38919627 - MTEb LTR MaLR -189 190 1 8 1217 1005 257 67 103 chr11 82924373 82924702 -38919154 - RMER12 LTR ERVK -107 1215 900 8 1217 6264 150 31 32 chr11 82924702 82925817 -38918039 - RLTR13D3 LTR ERVK 0 1114 1 8 1217 1005 257 67 103 chr11 82925817 82926021 -38917835 - RMER12 LTR ERVK -423 899 701 8 1217 1161 42 20 20 chr11 82926084 82926231 -38917625 - B1_Mus1 SINE Alu 0 148 2 8 1217 4007 133 16 4 chr11 82926231 82926931 -38916925 - RMER12 LTR ERVK -594 728 21 8 1217 226 259 52 0 chr11 82927339 82927397 -38916459 + ID4_ SINE ID 13 73 -10 8 1217 219 159 0 22 chr11 82927448 82927493 -38916363 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1217 207 114 0 0 chr11 82927640 82927675 -38916181 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1217 305 209 50 0 chr11 82929097 82929177 -38914679 - Lx9 LINE L1 -441 5862 5749 8 1217 443 85 47 60 chr11 82932120 82932270 -38911586 + (TCTCTG)n Simple_repeat Simple_repeat 2 149 0 8 1217 675 192 99 0 chr11 82933248 82933399 -38910457 + B3 SINE B2 50 215 -1 8 1217 243 231 65 27 chr11 82933559 82933679 -38910177 - MLT1C LTR MaLR -18 449 261 8 1217 38 39 0 0 chr11 82934112 82934164 -38909692 + AT_rich Low_complexity Low_complexity 1 52 0 8 1217 22 0 0 0 chr11 82936616 82936638 -38907218 + AT_rich Low_complexity Low_complexity 1 22 0 8 1217 332 257 127 13 chr11 82937219 82937369 -38906487 + MER34 LTR ERV1 11 177 -365 8 1217 328 292 58 21 chr11 82937498 82937679 -38906177 - L1MA4A LINE L1 -275 6022 5822 8 1217 25 0 0 0 chr11 82937745 82937770 -38906086 + AT_rich Low_complexity Low_complexity 1 25 0 8 1217 1080 103 0 0 chr11 82938001 82938147 -38905709 - B1_Mus1 SINE Alu -2 146 1 8 1217 866 70 0 0 chr11 82938678 82938793 -38905063 - ORR1A2 LTR MaLR -87 240 126 8 1217 362 283 29 93 chr11 82938817 82938890 -38904966 - Lx8 LINE L1 -189 7284 7221 8 1217 2454 152 24 14 chr11 82938890 82939305 -38904551 + MTC LTR MaLR 3 421 0 8 1217 362 283 29 93 chr11 82939305 82939371 -38904485 - Lx8 LINE L1 -253 7220 7154 8 1217 513 0 0 0 chr11 82939389 82939446 -38904410 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 1217 216 0 0 0 chr11 82939446 82939469 -38904387 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1217 212 240 219 16 chr11 82939915 82940038 -38903818 + B1F2 SINE Alu 1 148 -1 8 1217 742 324 114 0 chr11 82941349 82941639 -38902217 - RMER1B Other Other -737 329 7 8 1217 341 286 0 54 chr11 82941930 82942041 -38901815 + B3 SINE B2 105 209 -7 8 1217 2535 88 51 0 chr11 82942206 82942557 -38901299 - L1_Mus3 LINE L1 -2 6636 6268 8 1217 207 0 0 0 chr11 82942569 82942592 -38901264 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1217 4359 102 8 16 chr11 82942592 82942628 -38901228 + L1_Mus3 LINE L1 5252 5283 -600 8 1217 7376 63 12 13 chr11 82942628 82943607 -38900249 - RLTR13A3 LTR ERVK 0 978 1 8 1217 5612 73 4 9 chr11 82943607 82944609 -38899247 + L1_Mus3 LINE L1 5284 6285 -353 8 1217 644 290 72 24 chr11 82944775 82944880 -38898976 - MTEb LTR MaLR -86 293 191 8 1217 1289 88 27 6 chr11 82944880 82945063 -38898793 - B2_Mm1a SINE B2 -6 187 1 8 1217 644 246 77 5 chr11 82945063 82945238 -38898618 - MTEb LTR MaLR -189 190 1 8 1217 742 259 37 56 chr11 82945382 82945718 -38898138 - RMER12 LTR ERVK -186 1386 976 8 1217 624 91 0 0 chr11 82945718 82945806 -38898050 + (TA)n Simple_repeat Simple_repeat 2 89 0 8 1217 5765 151 42 34 chr11 82945806 82946911 -38896945 - RLTR13D3 LTR ERVK -1 1113 1 8 1217 462 79 0 0 chr11 82946926 82946989 -38896867 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 1217 556 250 20 26 chr11 82946996 82947148 -38896708 - RMER12 LTR ERVK -471 851 701 8 1217 207 0 0 0 chr11 82947190 82947213 -38896643 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1217 1169 54 0 33 chr11 82947230 82947382 -38896474 - B1_Mus1 SINE Alu 0 148 2 8 1217 4073 131 17 6 chr11 82947382 82948095 -38895761 - RMER12 LTR ERVK -594 728 8 8 1217 238 246 77 0 chr11 82948496 82948561 -38895295 + ID4_ SINE ID 13 82 -1 8 1217 320 207 157 12 chr11 82950114 82950197 -38893659 - RLTR13D3 LTR ERVK -945 169 75 8 1217 839 78 0 0 chr11 82950311 82950426 -38893430 - ORR1A2 LTR MaLR -87 240 126 8 1217 362 283 29 93 chr11 82950450 82950523 -38893333 - Lx8 LINE L1 -189 7284 7221 8 1217 2486 147 24 14 chr11 82950523 82950938 -38892918 + MTC LTR MaLR 3 421 0 8 1217 362 283 29 93 chr11 82950938 82951004 -38892852 - Lx8 LINE L1 -253 7220 7154 8 1217 774 67 0 0 chr11 82951022 82951127 -38892729 + (TC)n Simple_repeat Simple_repeat 2 106 0 8 1217 189 0 0 0 chr11 82951127 82951147 -38892709 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1217 766 317 114 0 chr11 82953033 82953323 -38890533 - RMER1B Other Other -737 329 7 8 1217 341 286 0 54 chr11 82953614 82953725 -38890131 + B3 SINE B2 105 209 -7 8 1217 2535 88 51 0 chr11 82953890 82954241 -38889615 - L1_Mus3 LINE L1 -2 6636 6268 8 1217 261 0 0 0 chr11 82954253 82954282 -38889574 + (TA)n Simple_repeat Simple_repeat 1 29 0 8 1217 4359 102 8 16 chr11 82954282 82954318 -38889538 + L1_Mus3 LINE L1 5252 5283 -600 9 1217 7376 63 12 13 chr11 82954318 82955297 -38888559 - RLTR13A3 LTR ERVK 0 978 1 9 1217 5612 73 4 9 chr11 82955297 82956299 -38887557 + L1_Mus3 LINE L1 5284 6285 -353 9 1217 644 290 72 24 chr11 82956465 82956570 -38887286 - MTEb LTR MaLR -86 293 191 9 1217 1287 99 16 6 chr11 82956570 82956753 -38887103 - B2_Mm1a SINE B2 -8 185 1 9 1217 644 246 77 5 chr11 82956753 82956928 -38886928 - MTEb LTR MaLR -189 190 1 9 1217 765 256 37 56 chr11 82957072 82957408 -38886448 - RMER12 LTR ERVK -186 1386 976 9 1217 702 65 0 0 chr11 82957408 82957500 -38886356 + (TA)n Simple_repeat Simple_repeat 2 93 0 9 1217 5741 152 42 34 chr11 82957500 82958605 -38885251 - RLTR13D3 LTR ERVK -1 1113 1 9 1217 435 83 0 0 chr11 82958620 82958680 -38885176 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1217 545 270 19 26 chr11 82958680 82958836 -38885020 - RMER12 LTR ERVK -467 855 701 9 1217 207 0 0 0 chr11 82958878 82958901 -38884955 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1217 1180 48 0 33 chr11 82958918 82959070 -38884786 - B1_Mus1 SINE Alu 0 148 2 9 1217 4073 131 17 6 chr11 82959070 82959783 -38884073 - RMER12 LTR ERVK -594 728 8 9 1217 238 246 77 0 chr11 82960184 82960249 -38883607 + ID4_ SINE ID 13 82 -1 9 1217 320 207 157 12 chr11 82961802 82961885 -38881971 - RLTR13D3 LTR ERVK -945 169 75 9 1217 839 78 0 0 chr11 82961999 82962114 -38881742 - ORR1A2 LTR MaLR -87 240 126 9 1217 362 283 29 93 chr11 82962138 82962211 -38881645 - Lx8 LINE L1 -189 7284 7221 9 1217 2472 149 24 14 chr11 82962211 82962626 -38881230 + MTC LTR MaLR 3 421 0 9 1217 362 283 29 93 chr11 82962626 82962692 -38881164 - Lx8 LINE L1 -253 7220 7154 9 1217 807 57 0 0 chr11 82962710 82962815 -38881041 + (TC)n Simple_repeat Simple_repeat 2 106 0 9 1217 189 0 0 0 chr11 82962815 82962835 -38881021 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1217 766 317 114 0 chr11 82964720 82965010 -38878846 - RMER1B Other Other -737 329 7 9 1217 341 286 0 54 chr11 82965301 82965412 -38878444 + B3 SINE B2 105 209 -7 9 1217 2535 88 51 0 chr11 82965577 82965928 -38877928 - L1_Mus3 LINE L1 -2 6636 6268 9 1217 189 0 0 0 chr11 82965940 82965961 -38877895 + (TA)n Simple_repeat Simple_repeat 1 21 0 9 1217 4359 102 8 16 chr11 82965961 82965997 -38877859 + L1_Mus3 LINE L1 5252 5283 -600 9 1217 7376 63 12 13 chr11 82965997 82966976 -38876880 - RLTR13A3 LTR ERVK 0 978 1 9 1217 5612 73 4 9 chr11 82966976 82967978 -38875878 + L1_Mus3 LINE L1 5284 6285 -353 9 1217 644 290 72 24 chr11 82968144 82968249 -38875607 - MTEb LTR MaLR -86 293 191 9 1217 1289 88 27 6 chr11 82968249 82968432 -38875424 - B2_Mm1a SINE B2 -6 187 1 9 152 644 246 77 5 chr11 82968432 82968607 -38875249 - MTEb LTR MaLR -189 190 1 9 1218 765 256 37 56 chr11 82968751 82969087 -38874769 - RMER12 LTR ERVK -186 1386 976 9 1218 630 71 0 0 chr11 82969087 82969171 -38874685 + (TA)n Simple_repeat Simple_repeat 2 85 0 9 1218 5741 152 42 34 chr11 82969171 82970276 -38873580 - RLTR13D3 LTR ERVK -1 1113 1 9 1218 444 82 0 0 chr11 82970291 82970352 -38873504 + (TA)n Simple_repeat Simple_repeat 1 61 0 9 1218 537 260 20 27 chr11 82970353 82970503 -38873353 - RMER12 LTR ERVK -473 849 701 9 1218 207 0 0 0 chr11 82970545 82970568 -38873288 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1218 1180 48 0 33 chr11 82970585 82970737 -38873119 - B1_Mus1 SINE Alu 0 148 2 9 1218 4073 131 17 6 chr11 82970737 82971450 -38872406 - RMER12 LTR ERVK -594 728 8 9 1218 238 246 77 0 chr11 82971851 82971916 -38871940 + ID4_ SINE ID 13 82 -1 9 1218 320 207 157 12 chr11 82973469 82973552 -38870304 - RLTR13D3 LTR ERVK -945 169 75 9 1218 839 78 0 0 chr11 82973666 82973781 -38870075 - ORR1A2 LTR MaLR -87 240 126 9 1218 362 283 29 93 chr11 82973805 82973878 -38869978 - Lx8 LINE L1 -189 7284 7221 9 1218 2486 147 24 14 chr11 82973878 82974293 -38869563 + MTC LTR MaLR 3 421 0 9 1218 362 283 29 93 chr11 82974293 82974359 -38869497 - Lx8 LINE L1 -253 7220 7154 9 1218 879 53 0 0 chr11 82974377 82974490 -38869366 + (TC)n Simple_repeat Simple_repeat 2 114 0 9 1218 742 324 114 0 chr11 82976390 82976680 -38867176 - RMER1B Other Other -737 329 7 9 1218 341 286 0 54 chr11 82976971 82977082 -38866774 + B3 SINE B2 105 209 -7 9 1218 2518 88 51 0 chr11 82977247 82977598 -38866258 - L1_Mus3 LINE L1 -2 6636 6268 9 1218 189 0 0 0 chr11 82977610 82977631 -38866225 + (TA)n Simple_repeat Simple_repeat 1 21 0 9 1218 4359 102 8 16 chr11 82977631 82977667 -38866189 + L1_Mus3 LINE L1 5252 5283 -600 9 1218 7376 63 12 13 chr11 82977667 82978646 -38865210 - RLTR13A3 LTR ERVK 0 978 1 9 1218 5612 73 4 9 chr11 82978646 82979648 -38864208 + L1_Mus3 LINE L1 5284 6285 -353 9 1218 644 290 72 24 chr11 82979814 82979919 -38863937 - MTEb LTR MaLR -86 293 191 9 1218 1287 99 16 6 chr11 82979919 82980102 -38863754 - B2_Mm1a SINE B2 -8 185 1 9 1218 644 246 77 5 chr11 82980102 82980277 -38863579 - MTEb LTR MaLR -189 190 1 9 1218 765 256 37 56 chr11 82980421 82980757 -38863099 - RMER12 LTR ERVK -186 1386 976 9 1218 612 73 0 0 chr11 82980757 82980839 -38863017 + (TA)n Simple_repeat Simple_repeat 2 83 0 9 1218 5765 151 42 34 chr11 82980839 82981944 -38861912 - RLTR13D3 LTR ERVK -1 1113 1 9 1218 462 79 0 0 chr11 82981959 82982022 -38861834 + (TA)n Simple_repeat Simple_repeat 1 63 0 9 1218 537 260 20 27 chr11 82982023 82982173 -38861683 - RMER12 LTR ERVK -473 849 701 9 1218 207 0 0 0 chr11 82982215 82982238 -38861618 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1218 1180 48 0 33 chr11 82982255 82982407 -38861449 - B1_Mus1 SINE Alu 0 148 2 9 1218 4096 130 17 6 chr11 82982407 82983120 -38860736 - RMER12 LTR ERVK -594 728 8 9 1218 238 246 77 0 chr11 82983521 82983586 -38860270 + ID4_ SINE ID 13 82 -1 9 1218 320 207 157 12 chr11 82985139 82985222 -38858634 - RLTR13D3 LTR ERVK -945 169 75 9 1218 839 78 0 0 chr11 82985336 82985451 -38858405 - ORR1A2 LTR MaLR -87 240 126 9 1218 333 291 29 93 chr11 82985475 82985548 -38858308 - Lx8 LINE L1 -189 7284 7221 9 1218 2450 154 24 5 chr11 82985548 82985959 -38857897 + MTC LTR MaLR 3 421 0 9 1218 333 291 29 93 chr11 82985959 82986025 -38857831 - Lx8 LINE L1 -253 7220 7154 9 1218 795 57 0 0 chr11 82986043 82986148 -38857708 + (TC)n Simple_repeat Simple_repeat 2 106 0 9 1218 212 240 219 16 chr11 82986618 82986741 -38857115 + B1F2 SINE Alu 1 148 -1 9 1218 202 73 24 24 chr11 82987615 82987657 -38856199 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 9 1218 477 177 0 0 chr11 82987760 82987873 -38855983 + (TG)n Simple_repeat Simple_repeat 1 113 0 9 1218 543 243 4 0 chr11 82987884 82988150 -38855706 + (TG)n Simple_repeat Simple_repeat 1 267 0 9 1218 258 32 0 0 chr11 82988506 82988537 -38855319 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1218 250 88 52 17 chr11 82989506 82989564 -38854292 + T-rich Low_complexity Low_complexity 4 63 0 9 1218 1296 90 5 0 chr11 82990191 82990379 -38853477 + MT2C_Mm LTR ERVL 287 475 0 9 1218 233 275 95 42 chr11 82990493 82990588 -38853268 - B1F SINE Alu -13 136 37 9 1218 835 71 0 0 chr11 82991326 82991439 -38852417 - B1_Mm SINE Alu -1 146 34 9 1218 239 299 186 0 chr11 82991584 82991681 -38852175 + B1_Mur2 SINE Alu 2 116 -33 9 1218 21 71 0 0 chr11 82991701 82991743 -38852113 + AT_rich Low_complexity Low_complexity 1 42 0 9 1218 648 230 53 24 chr11 82991903 82992072 -38851784 + B3 SINE B2 23 196 -20 9 1218 3265 22 0 0 chr11 82992205 82992571 -38851285 - L1Md_F2 LINE L1 -17 6565 6200 9 1218 243 229 86 0 chr11 82993755 82993825 -38850031 + L1MA8 LINE L1 4924 4999 -1141 9 1218 236 296 71 10 chr11 82993942 82994041 -38849815 + L1MA8 LINE L1 5365 5469 -714 9 1218 864 263 9 9 chr11 82994056 82994267 -38849589 - B3 SINE B2 0 216 6 9 1218 352 213 0 0 chr11 82994317 82994378 -38849478 - B3A SINE B2 -137 61 1 9 1218 1041 276 109 29 chr11 82994384 82994907 -38848949 + L1MA8 LINE L1 5468 6032 -259 9 1218 381 288 9 35 chr11 82995108 82995223 -38848633 - ID_B1 SINE B4 -34 190 79 9 1218 4968 68 15 31 chr11 82995317 82996000 -38847856 - L1_Mus2 LINE L1 0 6566 5895 9 1218 225 132 0 0 chr11 82996111 82996149 -38847707 + (GAGAA)n Simple_repeat Simple_repeat 5 42 0 9 1218 189 0 0 0 chr11 82996150 82996171 -38847685 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 9 1218 652 260 9 97 chr11 82996173 82996399 -38847457 + B3 SINE B2 3 208 -8 9 1218 266 300 69 122 chr11 82996974 82997262 -38846594 - L1MA4A LINE L1 -398 5905 5633 9 1218 453 266 85 31 chr11 82997307 82997609 -38846247 - Lx8 LINE L1 -2 7471 7000 9 1218 562 294 59 5 chr11 82997628 82997830 -38846026 - B3 SINE B2 -3 213 1 9 1218 587 265 29 12 chr11 82997833 82998005 -38845851 - Lx8 LINE L1 -452 7021 6847 9 1218 339 278 29 18 chr11 82998173 82998284 -38845572 - B3 SINE B2 -74 119 8 9 1218 346 324 78 24 chr11 82998539 82998871 -38844985 + L1M4c LINE L1 1030 1379 -5005 9 1218 258 281 0 35 chr11 82999276 82999361 -38844495 + L1MA4 LINE L1 5849 5930 -370 9 1218 261 0 0 0 chr11 82999399 82999428 -38844428 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1218 762 203 28 28 chr11 82999542 82999755 -38844101 + B3 SINE B2 2 214 -2 9 1218 920 300 50 60 chr11 83003223 83003822 -38840034 + Ricksha_0 DNA MuDR 1116 1708 -25 1 1218 375 306 46 33 chr11 83004341 83004493 -38839363 + RSINE1 SINE B4 2 155 -10 2 1218 691 225 47 19 chr11 83005468 83005681 -38838175 + RLTR20B3 LTR ERVK 99 317 -260 3 1218 817 143 342 0 chr11 83006112 83006273 -38837583 + B3 SINE B2 1 216 0 4 1218 2997 30 3 16 chr11 83006294 83006661 -38837195 + L1Md_F2 LINE L1 6221 6582 0 5 1218 328 289 78 75 chr11 83006684 83007001 -38836855 - L1MA4 LINE L1 -376 5927 5628 6 1218 288 239 167 71 chr11 83007210 83007336 -38836520 - Lx8 LINE L1 -326 7147 7010 7 1218 1478 189 52 99 chr11 83007384 83007789 -38836067 + ORR1B1 LTR MaLR 1 386 -8 8 1218 494 215 28 18 chr11 83007798 83007907 -38835949 - B3 SINE B2 -27 189 80 9 1218 504 247 32 124 chr11 83007909 83008020 -38835836 - RMER4B LTR ERVK 0 585 473 1 1218 1294 171 21 150 chr11 83008020 83008228 -38835628 - RMER17C LTR ERVK -3 407 223 1 1218 438 20 0 0 chr11 83008228 83008279 -38835577 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1218 1294 171 21 150 chr11 83008279 83008537 -38835319 - RMER17C LTR ERVK -188 222 1 1 1218 504 247 32 124 chr11 83008537 83008642 -38835214 - RMER4B LTR ERVK -113 472 389 1 1218 1605 32 0 26 chr11 83008678 83008873 -38834983 + B2_Mm1t SINE B2 1 190 -3 1 1218 4825 125 12 36 chr11 83008887 83009099 -38834757 - RMER17C-int LTR ERVK -126 3112 2899 1 1218 960 133 0 0 chr11 83009099 83009279 -38834577 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1218 6263 128 41 55 chr11 83009279 83011020 -38832836 - RMER17C-int LTR ERVK -340 2898 1275 1 1218 442 167 0 0 chr11 83011438 83011516 -38832340 - 7SLRNA srpRNA srpRNA -56 258 181 1 1218 1785 215 122 110 chr11 83011929 83012583 -38831273 - RMER17C-int LTR ERVK -2576 662 1 1 1218 1382 168 80 117 chr11 83012584 83013010 -38830846 - RMER17C LTR ERVK 0 410 1 1 1218 1990 197 34 19 chr11 83013015 83013429 -38830427 - RMER4B LTR ERVK -151 434 15 1 1218 478 119 0 0 chr11 83013434 83013501 -38830355 - MurERV4-int LTR ERVK 0 5260 5194 1 1218 786 293 26 21 chr11 83013607 83013986 -38829870 - RLTR16 LTR ERVK -56 449 18 1 1218 1017 204 4 98 chr11 83013986 83014252 -38829604 - MurERV4-int LTR ERVK -84 5176 4936 1 1218 3904 198 114 20 chr11 83014235 83015097 -38828759 - MurERV4-int LTR ERVK -3482 1778 836 1 1218 5467 183 71 62 chr11 83015225 83016827 -38827029 - RMER3D-int LTR ERVK -548 2294 295 1 1218 258 32 0 0 chr11 83016827 83016858 -38826998 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1218 884 228 109 157 chr11 83016858 83017113 -38826743 - RMER3D-int LTR ERVK -2548 294 1 1 1218 2265 175 24 26 chr11 83017113 83017607 -38826249 - RLTR31_Mur LTR ERVK 0 553 61 1 1218 1528 264 122 64 chr11 83017655 83018433 -38825423 - MurERV4-int LTR ERVK -4417 843 8 2 1218 1971 210 79 64 chr11 83018440 83018985 -38824871 - RMER4B LTR ERVK 0 585 33 2 1218 513 34 0 0 chr11 83018985 83019044 -38824812 + L1_Mus1 LINE L1 6108 6166 -401 2 1218 347 209 0 0 chr11 83019092 83019159 -38824697 - B3A SINE B2 -131 67 1 2 1218 536 149 20 10 chr11 83019294 83019396 -38824460 - ORR1B1 LTR MaLR 0 329 227 2 1218 23079 76 11 12 chr11 83019396 83023259 -38820597 - L1Md_F LINE L1 -1655 4228 371 2 1218 5505 161 46 5 chr11 83023261 83024296 -38819560 - MYSERV16_I-int LTR ERVK -193 2133 1056 2 1218 227 239 67 86 chr11 83024296 83024401 -38819455 - RMER4B LTR ERVK -34 551 449 2 1218 878 166 3 16 chr11 83024401 83024573 -38819283 - MYSERV16_I-int LTR ERVK -1376 950 812 2 1218 1318 175 8 4 chr11 83024589 83024836 -38819020 - RLTR20B3 LTR ERVK -329 248 1 2 1218 347 129 0 0 chr11 83024836 83024896 -38818960 - ORR1B1-int LTR MaLR -339 1453 1402 2 1218 2507 202 66 19 chr11 83024911 83025551 -38818305 - ORR1B1-int LTR MaLR -1293 670 1 2 1218 1590 226 23 11 chr11 83025551 83025901 -38817955 - ORR1B1 LTR MaLR 0 394 41 2 1218 315 263 219 0 chr11 83028830 83028944 -38814912 + B1_Mur2 SINE Alu 1 139 -10 2 1218 2169 92 155 6 chr11 83029122 83029470 -38814386 - MTB LTR MaLR 0 400 1 3 1218 6357 108 53 37 chr11 83029470 83030551 -38813305 - MTB-int LTR MaLR 0 1098 1 3 1218 525 133 11 0 chr11 83030551 83030641 -38813215 - MTB LTR MaLR 0 407 317 3 1218 519 104 0 0 chr11 83030631 83030708 -38813148 - MTB LTR MaLR -330 77 1 3 1218 647 297 22 14 chr11 83031210 83031432 -38812424 + Ricksha_0 DNA MuDR 1116 1339 -394 3 1218 2126 97 24 39 chr11 83031435 83031829 -38812027 + IAPEY_LTR LTR ERVK 1 473 -2 3 1218 7628 72 10 2 chr11 83031965 83033426 -38810430 - L1Md_F2 LINE L1 -2 6580 5108 3 1218 364 310 44 25 chr11 83034207 83034366 -38809490 + RSINE1 SINE B4 2 163 -2 3 1218 853 235 9 14 chr11 83034419 83034635 -38809221 + B3 SINE B2 1 215 -1 3 1218 1169 99 64 0 chr11 83034677 83034849 -38809007 + B2_Mm2 SINE B2 5 187 -8 3 1218 382 204 44 22 chr11 83035263 83035353 -38808503 - RLTR19-int LTR ERVK -5153 984 893 3 1218 506 261 70 0 chr11 83035376 83035518 -38808338 - RLTR42-int LTR ERVK -4266 1256 1105 3 1218 207 197 0 47 chr11 83036740 83036804 -38807052 + T-rich Low_complexity Low_complexity 5 65 0 3 1218 723 30 0 19 chr11 83036810 83036913 -38806943 - B1_Mus2 SINE Alu 0 147 47 4 1218 260 253 180 71 chr11 83036945 83037256 -38806600 + RLTR12B LTR ERVK 134 478 -50 4 1218 1296 219 46 41 chr11 83038094 83038285 -38805571 - RMER10A LTR ERVL -5 437 245 4 1218 1809 137 70 50 chr11 83038285 83038686 -38805170 + RMER17C LTR ERVK 2 410 0 4 1218 1296 219 46 41 chr11 83038686 83038908 -38804948 - RMER10A LTR ERVL -198 244 22 4 1218 3979 196 67 62 chr11 83039027 83040109 -38803747 + RLTR21 LTR ERVK 10 1203 -201 4 1218 360 0 0 0 chr11 83040109 83040149 -38803707 + (TATG)n Simple_repeat Simple_repeat 4 43 0 4 1218 353 156 132 11 chr11 83040149 83040187 -38803669 + RLTR21 LTR ERVK 1204 1250 -154 4 1218 282 116 0 0 chr11 83040188 83040231 -38803625 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1218 464 295 28 22 chr11 83040262 83040441 -38803415 + RLTR21 LTR ERVK 1288 1436 -136 4 1218 654 272 170 4 chr11 83040745 83040992 -38802864 + B4 SINE B4 1 288 -4 4 1218 4082 190 5 14 chr11 83041628 83042412 -38801444 - RMER13A LTR ERVK 0 860 84 4 1218 4196 150 64 38 chr11 83042412 83043371 -38800485 - RMER17B LTR ERVK 0 958 1 4 1218 545 136 0 0 chr11 83043372 83043460 -38800396 - RMER13A LTR ERVK -772 88 1 4 1218 486 281 55 17 chr11 83043461 83043703 -38800153 + L1MA6 LINE L1 5845 6106 -62 5 1218 220 362 0 0 chr11 83043743 83043812 -38800044 - ID4_ SINE ID -13 70 2 5 1218 260 345 34 34 chr11 83043821 83043968 -38799888 - B1F SINE Alu -2 147 1 5 1218 288 250 12 23 chr11 83044120 83044206 -38799650 + GA-rich Low_complexity Low_complexity 2 86 0 5 1218 487 323 13 0 chr11 83044209 83044364 -38799492 + B3 SINE B2 2 158 -58 5 1218 778 192 0 0 chr11 83044967 83045097 -38798759 + B3 SINE B2 1 130 -86 5 1218 3426 131 11 26 chr11 83045141 83045715 -38798141 - RMER17C-int LTR ERVK -355 2883 2319 5 1218 2148 88 6 56 chr11 83045719 83046058 -38797798 - RLTRETN_Mm LTR ERVK 0 322 1 5 1218 8936 119 26 35 chr11 83046058 83047853 -38796003 - MMETn-int LTR ERVK 0 4844 3566 5 1218 22604 58 7 19 chr11 83047851 83050820 -38793036 - MMETn-int LTR ERVK -1910 2934 2 5 1218 2172 93 3 56 chr11 83050821 83051161 -38792695 - RLTRETN_Mm LTR ERVK 0 322 1 5 1218 4437 156 50 20 chr11 83051161 83051999 -38791857 - RMER17C-int LTR ERVK -753 2485 1629 5 1218 3137 167 31 78 chr11 83051999 83052360 -38791496 - RMER17C-int LTR ERVK -1161 1681 1346 5 1218 3336 48 2 0 chr11 83052360 83052753 -38791103 + MTA_Mm LTR MaLR 1 394 -2 5 1218 3137 167 31 78 chr11 83052753 83053092 -38790764 - RMER17C-int LTR ERVK -1497 1345 1014 5 1218 1559 226 56 51 chr11 83053105 83053636 -38790220 - RMER17C-int LTR ERVK -1991 851 1 5 1218 1979 172 81 13 chr11 83053684 83054174 -38789682 - RLTR31_Mur LTR ERVK -31 530 1 5 1218 1484 209 25 0 chr11 83054174 83054451 -38789405 - MurERV4-int LTR ERVK -4418 842 559 6 1218 1048 246 17 53 chr11 83054489 83054936 -38788920 - MurERV4-int LTR ERVK -4745 515 38 6 1218 1322 196 34 67 chr11 83054983 83055339 -38788517 - RMER4B LTR ERVK -225 360 17 6 1218 362 265 0 0 chr11 83055347 83055430 -38788426 - B3 SINE B2 -133 83 1 6 1218 2993 189 38 25 chr11 83055463 83055782 -38788074 - RLTR26 LTR ERVK 0 642 327 6 1218 1358 102 5 0 chr11 83055782 83055968 -38787888 - B2_Mm1a SINE B2 -6 187 1 6 1218 2993 189 38 25 chr11 83055968 83056282 -38787574 - RLTR26 LTR ERVK -316 326 1 6 1218 1695 196 70 13 chr11 83056403 83056776 -38787080 - ORR1B1 LTR MaLR 0 394 1 6 1218 1539 199 73 13 chr11 83056796 83057219 -38786637 - BGLII_B LTR ERVK 0 441 3 6 1218 304 241 79 92 chr11 83057224 83057452 -38786404 + L1M4c LINE L1 1180 1404 -4980 6 1218 1178 62 0 0 chr11 83057677 83057823 -38786033 + B1_Mm SINE Alu 2 147 0 6 1218 504 86 0 0 chr11 83057837 83057907 -38785949 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 6 1218 1618 164 52 6 chr11 83058115 83058440 -38785416 - ORR1B1 LTR MaLR 0 394 55 7 1218 627 167 0 0 chr11 83058431 83058539 -38785317 - RLTR20B3 LTR ERVK -465 112 5 7 1218 7951 156 42 8 chr11 83058543 83058628 -38785228 - MYSERV16_I-int LTR ERVK 0 2326 2226 7 1218 251 54 27 0 chr11 83058628 83058665 -38785191 + (ATATG)n Simple_repeat Simple_repeat 2 39 0 7 1218 7951 156 42 8 chr11 83058665 83060043 -38783813 - MYSERV16_I-int LTR ERVK -101 2225 812 7 1218 1483 146 4 0 chr11 83060091 83060338 -38783518 - RLTR20B3 LTR ERVK -329 248 1 7 1218 319 217 0 0 chr11 83060338 83060398 -38783458 - ORR1B1-int LTR MaLR -337 1626 1567 7 1218 2524 198 78 16 chr11 83060413 83061044 -38782812 - ORR1B1-int LTR MaLR -1293 670 1 7 1218 636 204 29 16 chr11 83061046 83061206 -38782650 - ORR1B1 LTR MaLR -2 392 171 7 1218 35440 64 6 3 chr11 83061214 83066398 -38777458 + L1Md_F3 LINE L1 446 5586 -297 7 1218 8447 31 2 0 chr11 83066399 83067380 -38776476 + L1Md_F3 LINE L1 5588 6570 -14 7 1218 912 244 22 13 chr11 83067406 83067634 -38776222 - ORR1B1 LTR MaLR -124 270 41 7 1218 3358 78 6 8 chr11 83068928 83069419 -38774437 - RLTR1C LTR ERV1 -13 490 1 7 1218 7915 85 38 12 chr11 83069419 83071628 -38772228 - MMVL30-int LTR ERV1 0 3698 1496 7 1218 210 37 0 0 chr11 83071783 83071810 -38772046 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1218 356 211 35 17 chr11 83071822 83071938 -38771918 + RLTR1B-int LTR ERV1 1067 1184 -2115 7 1218 180 0 0 0 chr11 83071940 83071960 -38771896 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1218 263 75 0 0 chr11 83072064 83072104 -38771752 - MMVL30-int LTR ERV1 -2187 1511 1472 7 1218 638 272 29 34 chr11 83072174 83072383 -38771473 + ID_B1 SINE B4 6 213 -11 8 1218 405 0 0 0 chr11 83072884 83072929 -38770927 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1218 1651 119 0 0 chr11 83074081 83074333 -38769523 - RLTR8 LTR ERVK 0 365 114 8 1218 626 13 0 0 chr11 83074373 83074450 -38769406 + L1Md_T LINE L1 6505 6581 -1 8 1218 1364 96 5 0 chr11 83074490 83074677 -38769179 - B2_Mm1a SINE B2 -5 188 1 8 1218 535 96 0 0 chr11 83075091 83075164 -38768692 - RLTR8 LTR ERVK -292 73 1 8 1218 687 269 45 72 chr11 83075354 83075644 -38768212 + RLTR9A LTR ERVK 1 282 -86 8 1218 482 72 14 0 chr11 83075644 83075713 -38768143 + B2_Mm1t SINE B2 2 71 -122 8 1218 229 306 58 12 chr11 83075713 83075730 -38768126 + RSINE1 SINE B4 3 92 -73 8 1218 752 50 10 0 chr11 83075844 83075945 -38767911 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 8 1218 585 255 19 13 chr11 83075958 83076113 -38767743 + B3 SINE B2 3 158 -58 8 1218 859 173 244 17 chr11 83077211 83077387 -38766469 + B3 SINE B2 1 216 0 9 1218 358 246 93 0 chr11 83077418 83077536 -38766320 - L1MA4 LINE L1 -370 5930 5802 9 1218 280 254 189 39 chr11 83077872 83077999 -38765857 + B1_Mm SINE Alu 1 146 -1 9 1218 2575 54 13 0 chr11 83078295 83078610 -38765246 + L1_Mus1 LINE L1 6249 6567 0 9 1218 254 165 25 25 chr11 83078804 83078885 -38764971 + (TA)n Simple_repeat Simple_repeat 2 82 0 9 1218 982 256 62 28 chr11 83078919 83079240 -38764616 + Ricksha_c DNA MuDR 1421 1752 -296 9 1218 1457 50 50 0 chr11 83079463 83079623 -38764233 + B2_Mm1a SINE B2 1 160 -33 9 1218 216 0 0 0 chr11 83079623 83079647 -38764209 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 9 1218 1457 50 50 0 chr11 83079647 83079668 -38764188 + B2_Mm1a SINE B2 161 190 -3 9 1218 314 256 0 13 chr11 83080266 83080345 -38763511 + RSINE1 SINE B4 7 84 -81 9 1218 1991 147 57 8 chr11 83080466 83080837 -38763019 - ORR1B1 LTR MaLR -5 389 1 9 1218 450 18 0 0 chr11 83080944 83080999 -38762857 - ORR1A1 LTR MaLR 0 346 292 1 1218 333 0 0 0 chr11 83081014 83081051 -38762805 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1218 307 145 0 40 chr11 83081065 83081132 -38762724 - B2_Mm2 SINE B2 -107 109 47 1 1218 1323 90 11 0 chr11 83081164 83081341 -38762515 - B2_Mm1t SINE B2 -14 179 1 1 1218 1726 113 22 0 chr11 83081343 83081617 -38762239 - ORR1A3 LTR MaLR -44 282 3 1 1218 227 358 21 10 chr11 83082241 83082337 -38761519 + MTE-int LTR MaLR 1442 1538 -42 1 1218 1203 107 44 11 chr11 83082809 83082989 -38760867 - B2_Mm2 SINE B2 -8 187 2 1 1218 1936 153 66 6 chr11 83083153 83083501 -38760355 - RLTR14 LTR ERV1 0 382 14 1 1218 2156 145 58 0 chr11 83083508 83083873 -38759983 + ORR1B1 LTR MaLR 1 386 -8 1 1218 433 246 148 0 chr11 83084161 83084283 -38759573 + B1_Mur2 SINE Alu 2 141 -8 1 1218 255 226 0 2 chr11 83084316 83084371 -38759485 + B1F1 SINE Alu 46 99 -21 1 1218 1678 21 0 0 chr11 83084999 83085186 -38758670 + U2 snRNA snRNA 1 187 -1 1 1218 220 197 0 195 chr11 83085391 83085473 -38758383 + B1F1 SINE Alu 57 122 -27 1 1218 211 114 0 54 chr11 83085872 83085909 -38757947 + PB1D10 SINE Alu 78 112 -5 1 1218 460 189 141 61 chr11 83085936 83086099 -38757757 + B2_Mm2 SINE B2 6 181 -14 1 1218 3178 274 53 38 chr11 83086637 83087758 -38756098 - Lx9 LINE L1 -73 7571 6434 1 1218 286 61 41 0 chr11 83087781 83087830 -38756026 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1218 1006 214 172 33 chr11 83088090 83088485 -38755371 - Lx9 LINE L1 -1671 5973 5487 1 1218 295 192 26 0 chr11 83088853 83088931 -38754925 + GA-rich Low_complexity Low_complexity 2 81 0 1 1218 325 279 11 34 chr11 83090572 83090661 -38753195 + B1F SINE Alu 62 148 -1 1 1218 279 259 118 0 chr11 83091516 83091601 -38752255 - PB1D10 SINE Alu -8 109 15 1 1218 415 200 44 0 chr11 83092169 83092259 -38751597 + PB1D10 SINE Alu 21 114 -3 1 1218 453 19 0 0 chr11 83093502 83093556 -38750300 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1218 1154 36 0 7 chr11 83093556 83093695 -38750161 - B1_Mus1 SINE Alu -10 138 1 1 1218 726 182 0 0 chr11 83093738 83093892 -38749964 + (TG)n Simple_repeat Simple_repeat 1 154 0 1 1218 677 235 58 7 chr11 83093892 83094046 -38749810 - RSINE1 SINE B4 0 165 4 1 1218 441 314 105 0 chr11 83094048 83094201 -38749655 + MER20 DNA MER1_type 46 214 -5 1 1218 814 256 50 20 chr11 83094463 83094662 -38749194 - ID_B1 SINE B4 -13 211 7 1 1218 33 0 0 0 chr11 83094730 83094763 -38749093 + AT_rich Low_complexity Low_complexity 1 33 0 1 1218 210 91 0 0 chr11 83094896 83094929 -38748927 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1218 306 0 0 0 chr11 83094949 83094983 -38748873 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1218 258 54 0 0 chr11 83095098 83095135 -38748721 - B2_Mm2 SINE B2 -158 37 1 1 1218 226 141 5 76 chr11 83095225 83095299 -38748557 + B1F SINE Alu 45 149 0 1 1218 286 175 48 0 chr11 83095724 83095787 -38748069 + B1_Mur4 SINE Alu 5 70 -80 1 1218 236 273 0 0 chr11 83097837 83097903 -38745953 - ID4 SINE ID -15 68 3 1 1218 336 186 69 28 chr11 83098334 83098406 -38745450 + RLTR25B LTR ERVK 435 509 -519 1 1218 682 86 0 28 chr11 83098343 83098451 -38745405 + B1_Mus2 SINE Alu 43 147 0 1 1218 908 55 0 8 chr11 83098459 83098587 -38745269 + (GAGAA)n Simple_repeat Simple_repeat 4 130 0 1 1218 413 208 0 0 chr11 83098598 83098675 -38745181 + PB1D10 SINE Alu 1 77 -40 1 1218 652 160 24 8 chr11 83098683 83098809 -38745047 + ID_B1 SINE B4 96 223 -1 1 152 574 220 41 28 chr11 83099505 83099650 -38744206 - B1_Mur3 SINE Alu -2 147 1 1 1219 206 257 152 83 chr11 83099650 83099854 -38744002 - L3 LINE CR1 -24 4465 4248 1 1219 653 195 0 38 chr11 83100511 83100644 -38743212 - B1_Mur1 SINE Alu 0 149 22 1 1219 21 0 0 0 chr11 83100885 83100906 -38742950 + AT_rich Low_complexity Low_complexity 1 21 0 1 1219 411 262 70 7 chr11 83100925 83101067 -38742789 - L1MA4A LINE L1 -380 5923 5773 1 1219 1665 231 129 12 chr11 83101081 83101560 -38742296 - Lx9 LINE L1 -15 7629 7095 1 1219 546 96 0 46 chr11 83101560 83101647 -38742209 - B2_Mm2 SINE B2 -77 118 36 1 1219 378 0 0 0 chr11 83101699 83101741 -38742115 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1219 199 251 20 92 chr11 83102608 83102708 -38741148 - MIRm SINE MIR -165 103 13 1 1219 1466 65 16 0 chr11 83102863 83103049 -38740807 - B2_Mm2 SINE B2 -2 193 5 1 1219 273 119 0 0 chr11 83103139 83103181 -38740675 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1219 3187 63 2 8 chr11 83103404 83103802 -38740054 + MTA_Mm LTR MaLR 1 396 0 1 1219 525 220 34 0 chr11 83104415 83104533 -38739323 - B1_Mm SINE Alu -23 124 3 1 1219 768 211 14 0 chr11 83104673 83104820 -38739036 + B3 SINE B2 53 201 -15 1 1219 324 48 0 0 chr11 83105425 83105467 -38738389 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1219 1336 82 66 0 chr11 83106158 83106341 -38737515 - B2_Mm2 SINE B2 0 195 1 1 1219 412 219 25 34 chr11 83106345 83106463 -38737393 - PB1D10 SINE Alu 0 117 1 1 1219 318 146 0 0 chr11 83106738 83106793 -38737063 - B3A SINE B2 -143 55 1 1 1219 252 0 0 0 chr11 83106929 83106957 -38736899 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1219 861 64 0 23 chr11 83106972 83107100 -38736756 - L1Md_F2 LINE L1 -10 6572 6448 1 1219 254 263 0 0 chr11 83107210 83107267 -38736589 - AluF_3 SINE Alu -118 193 137 1 1219 705 196 64 21 chr11 83107443 83107584 -38736272 - B1_Mur2 SINE Alu -2 147 1 1 1219 226 264 153 0 chr11 83109192 83109264 -38734592 - PB1D10 SINE Alu -34 83 1 1 1219 374 269 0 61 chr11 83110159 83110274 -38733582 - B3 SINE B2 -105 111 4 1 1219 1185 48 7 0 chr11 83110302 83110448 -38733408 - B1_Mus1 SINE Alu 0 148 2 1 1219 1179 41 0 14 chr11 83113213 83113361 -38730495 - B1_Mus2 SINE Alu -1 146 1 1 1219 895 216 78 5 chr11 83113514 83113705 -38730151 - B3 SINE B2 -10 206 2 1 1219 243 200 108 0 chr11 83113922 83113987 -38729869 - MLT1N2 LTR MaLR 0 562 491 1 1219 717 251 18 0 chr11 83114002 83114165 -38729691 + B3A SINE B2 3 168 -30 1 1219 243 264 153 0 chr11 83114588 83114660 -38729196 + BC1_Mm scRNA scRNA 3 85 -67 1 1219 875 178 20 0 chr11 83114905 83115051 -38728805 - B1_Mur3 SINE Alu 0 149 1 1 1219 1292 94 10 45 chr11 83115059 83115259 -38728597 - B2_Mm2 SINE B2 -1 194 2 1 1219 836 165 225 17 chr11 83115290 83115463 -38728393 + B3 SINE B2 3 211 -5 1 1219 201 158 26 0 chr11 83116301 83116339 -38727517 + (CCG)n Simple_repeat Simple_repeat 1 39 0 1 1219 253 317 19 0 chr11 83119023 83119116 -38724740 - ID2 SINE ID -54 98 2 1 1219 798 210 147 21 chr11 83119181 83119371 -38724485 - B3 SINE B2 0 216 3 1 1219 445 245 9 9 chr11 83119736 83119843 -38724013 + B1F2 SINE Alu 43 149 0 1 1219 307 225 212 0 chr11 83120129 83120209 -38723647 - B1_Mur2 SINE Alu -7 142 46 1 1219 543 266 14 14 chr11 83120221 83120362 -38723494 + ID_B1 SINE B4 82 222 -2 1 1219 556 243 43 35 chr11 83120373 83120514 -38723342 + B1_Mur1 SINE Alu 1 142 -7 1 1219 781 220 32 42 chr11 83120518 83120708 -38723148 + B3A SINE B2 11 198 0 1 1219 1376 85 26 0 chr11 83120874 83121063 -38722793 - B2_Mm2 SINE B2 -1 194 1 1 1219 410 211 33 50 chr11 83121096 83121216 -38722640 - ID_B1 SINE B4 0 224 107 1 1219 228 297 54 0 chr11 83121958 83122032 -38721824 - ID4 SINE ID -4 79 2 1 1219 943 115 43 0 chr11 83122603 83122742 -38721114 + B1_Mur4 SINE Alu 1 145 -5 1 1219 294 274 43 26 chr11 83122822 83122938 -38720918 + L1MC4 LINE L1 7186 7303 -739 1 1219 1135 50 7 0 chr11 83122942 83123081 -38720775 + B1_Mus2 SINE Alu 2 141 -6 1 1219 1524 63 5 0 chr11 83123093 83123284 -38720572 + B2_Mm1a SINE B2 2 193 0 1 1219 727 235 26 16 chr11 83123347 83123530 -38720326 + B3 SINE B2 1 176 -19 1 1219 495 196 72 36 chr11 83123719 83123830 -38720026 + B1_Mur2 SINE Alu 33 147 -2 1 1219 263 156 111 30 chr11 83123898 83123997 -38719859 - Lx5 LINE L1 0 7050 6944 1 1219 458 242 81 0 chr11 83124138 83124287 -38719569 + L1MC4 LINE L1 7803 7963 -79 1 1219 874 266 5 40 chr11 83124391 83124548 -38719308 - B3 SINE B2 0 216 68 1 1219 3205 26 45 0 chr11 83124548 83124927 -38718929 + MTA_Mm LTR MaLR 1 396 0 1 1219 874 266 5 40 chr11 83124927 83124992 -38718864 - B3 SINE B2 -149 67 2 1 1219 338 314 62 35 chr11 83125019 83125164 -38718692 - B1F1 SINE Alu 0 149 1 1 1219 436 229 62 0 chr11 83125400 83125496 -38718360 + PB1D10 SINE Alu 8 109 -8 1 1219 503 266 0 90 chr11 83125502 83125680 -38718176 + RSINE1 SINE B4 4 165 0 1 1219 466 172 153 65 chr11 83125810 83125934 -38717922 - B1_Mur4 SINE Alu 0 150 16 1 1219 420 287 51 7 chr11 83126596 83126733 -38717123 + B1F2 SINE Alu 6 148 -1 1 1219 796 173 21 28 chr11 83127091 83127234 -38716622 - B1F2 SINE Alu -6 143 2 1 1219 306 284 21 54 chr11 83127366 83127388 -38716468 - RSINE1 SINE B4 0 165 144 1 1219 249 33 0 0 chr11 83127388 83127418 -38716438 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1219 306 284 21 54 chr11 83127418 83127488 -38716368 - RSINE1 SINE B4 -22 143 76 1 1219 2971 247 69 17 chr11 83127510 83127620 -38716236 - Lx8 LINE L1 -4 7469 7342 2 1219 315 0 0 0 chr11 83127620 83127655 -38716201 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 1219 2971 247 69 17 chr11 83127655 83128280 -38715576 - Lx8 LINE L1 -132 7341 6694 2 1219 1526 201 87 6 chr11 83128280 83128626 -38715230 - ORR1D1 LTR MaLR 0 374 1 2 1219 2971 247 69 17 chr11 83128626 83128712 -38715144 - Lx8 LINE L1 -780 6693 6607 2 1219 375 309 5 45 chr11 83128842 83128997 -38714859 + B4 SINE B4 5 146 -146 2 1219 644 207 103 7 chr11 83129084 83129230 -38714626 - B3 SINE B2 -3 213 54 2 1219 1007 208 38 10 chr11 83129241 83129450 -38714406 + B3 SINE B2 2 216 0 2 1219 340 165 83 55 chr11 83130085 83130194 -38713662 + PB1 SINE Alu 15 126 -1 2 1219 867 20 0 0 chr11 83130406 83130507 -38713349 + (TTTTC)n Simple_repeat Simple_repeat 1 101 0 2 1219 1036 103 13 0 chr11 83130510 83130666 -38713190 - B2_Mm2 SINE B2 -26 169 12 2 1219 265 301 98 0 chr11 83130903 83131056 -38712800 + Charlie1a DNA MER1_type 149 316 -1139 2 1219 223 250 83 0 chr11 83131066 83131138 -38712718 - RSINE1 SINE B4 -6 159 82 2 1219 519 118 0 0 chr11 83131186 83131271 -38712585 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1219 755 208 157 11 chr11 83131316 83131501 -38712355 + B3 SINE B2 5 216 0 2 1219 351 269 111 21 chr11 83131506 83131650 -38712206 + Charlie1a DNA MER1_type 994 1150 -305 2 1219 304 302 126 0 chr11 83131695 83131814 -38712042 + RSINE1 SINE B4 2 135 -30 2 1219 574 209 109 22 chr11 83131915 83132052 -38711804 - B1_Mur2 SINE Alu 0 149 1 2 1219 227 254 47 16 chr11 83132075 83132139 -38711717 + MER58D DNA MER1_type 321 386 0 2 1219 320 230 117 68 chr11 83132266 83132429 -38711427 - Charlie1a DNA MER1_type -3 1452 1282 2 1219 350 250 14 0 chr11 83132458 83132530 -38711326 - ID4_ SINE ID -9 74 2 2 1219 393 302 48 0 chr11 83132533 83132659 -38711197 - B1F SINE Alu -5 144 13 2 1219 359 295 9 9 chr11 83132976 83133082 -38710774 + RSINE1 SINE B4 46 151 -14 2 1219 883 65 0 24 chr11 83133296 83133422 -38710434 - B1_Mus1 SINE Alu 0 148 26 2 1219 1153 68 7 0 chr11 83133535 83133681 -38710175 - B1_Mus2 SINE Alu 0 147 1 2 1219 264 279 0 0 chr11 83133815 83133876 -38709980 + L1MC4 LINE L1 6799 6859 -1183 2 1219 1485 63 11 0 chr11 83133886 83134076 -38709780 + B2_Mm1t SINE B2 2 193 0 2 1219 463 281 30 38 chr11 83134344 83134477 -38709379 + B1F SINE Alu 9 140 -9 2 1219 367 289 0 0 chr11 83134541 83134624 -38709232 + ID4 SINE ID 1 83 0 2 1219 306 0 0 0 chr11 83134729 83134763 -38709093 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1219 1130 58 0 0 chr11 83134764 83134901 -38708955 - B1_Mus1 SINE Alu -11 137 1 2 1219 1372 76 43 0 chr11 83134917 83135102 -38708754 - B2_Mm2 SINE B2 -1 194 2 2 1219 216 0 0 0 chr11 83135125 83135149 -38708707 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1219 276 291 0 0 chr11 83135172 83135227 -38708629 + ID4_ SINE ID 2 56 -27 2 1219 22 35 0 0 chr11 83135270 83135299 -38708557 + AT_rich Low_complexity Low_complexity 1 29 0 2 1219 565 235 78 0 chr11 83135978 83136131 -38707725 - B3A SINE B2 -33 165 1 2 1219 186 71 0 0 chr11 83136822 83136850 -38707006 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1219 620 236 64 7 chr11 83136852 83136993 -38706863 - B1_Mur2 SINE Alu 0 149 1 2 1219 333 36 0 52 chr11 83136994 83137052 -38706804 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 2 1219 617 134 231 16 chr11 83137090 83137211 -38706645 - B1_Mur2 SINE Alu -2 147 1 2 1219 730 212 41 24 chr11 83137452 83137621 -38706235 + B3A SINE B2 1 172 -26 2 1219 717 212 26 40 chr11 83137635 83137787 -38706069 - B3 SINE B2 -19 197 48 2 1219 935 119 43 12 chr11 83138728 83138890 -38704966 + B2_Mm2 SINE B2 1 167 -28 2 1219 463 275 69 0 chr11 83139038 83139165 -38704691 - ID_B1 SINE B4 -10 214 82 2 1219 216 0 0 0 chr11 83139165 83139189 -38704667 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1219 25 0 0 0 chr11 83139651 83139676 -38704180 + AT_rich Low_complexity Low_complexity 1 25 0 2 1219 217 203 16 48 chr11 83139676 83139738 -38704118 - B1_Mus2 SINE Alu -7 140 81 2 1219 1402 70 32 5 chr11 83140307 83140495 -38703361 - B2_Mm2 SINE B2 0 195 3 2 1219 290 248 196 0 chr11 83141634 83141767 -38702089 + B3A SINE B2 17 175 -23 2 1219 580 267 0 8 chr11 83141835 83141967 -38701889 + B1_Mur2 SINE Alu 2 132 -17 2 1219 625 147 0 35 chr11 83141984 83142097 -38701759 - B1_Mur4 SINE Alu 0 150 42 2 1219 291 125 36 0 chr11 83142116 83142172 -38701684 - B3 SINE B2 -157 59 2 2 1219 250 362 105 0 chr11 83142253 83142358 -38701498 - PB1D10 SINE Alu -1 116 1 2 1219 396 0 0 0 chr11 83143279 83143323 -38700533 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1219 478 228 26 0 chr11 83143558 83143672 -38700184 - ID_B1 SINE B4 -8 216 100 2 1219 28 29 0 0 chr11 83144330 83144365 -38699491 + AT_rich Low_complexity Low_complexity 1 35 0 2 1219 969 122 97 6 chr11 83144386 83144551 -38699305 - B2_Mm2 SINE B2 -14 181 2 2 1219 478 221 292 14 chr11 83144836 83144983 -38698873 + B3 SINE B2 1 188 -28 2 1219 781 168 36 0 chr11 83145123 83145260 -38698596 - B1_Mur4 SINE Alu 0 150 9 2 1219 882 173 201 0 chr11 83145310 83145489 -38698367 - B3 SINE B2 0 216 2 2 1219 26 0 0 0 chr11 83145513 83145539 -38698317 + AT_rich Low_complexity Low_complexity 1 26 0 2 1219 753 151 31 23 chr11 83145551 83145680 -38698176 - B3 SINE B2 -86 130 1 2 1219 325 262 26 70 chr11 83146001 83146157 -38697699 - B1F SINE Alu 0 149 1 2 1219 435 258 48 30 chr11 83147587 83147755 -38696101 - L2a LINE L2 -8 3418 3248 2 1219 233 234 92 15 chr11 83147844 83147909 -38695947 - PB1D10 SINE Alu 0 117 48 2 1219 452 241 73 0 chr11 83147929 83148066 -38695790 - B1_Mur1 SINE Alu -1 148 2 2 1219 185 0 0 39 chr11 83148362 83148388 -38695468 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 2 1219 557 195 1 0 chr11 83149280 83149398 -38694458 - PB1D7 SINE Alu 0 120 2 2 1219 246 246 60 60 chr11 83149302 83149419 -38694437 - B4A SINE B4 -105 187 71 2 1219 232 290 27 55 chr11 83149557 83149630 -38694226 + ID SINE ID 2 72 -152 2 1219 1038 113 119 0 chr11 83150057 83150216 -38693640 + B2_Mm1t SINE B2 1 178 -15 2 1219 908 205 20 20 chr11 83150481 83150680 -38693176 - B3 SINE B2 -8 208 10 2 1219 586 211 9 0 chr11 83150913 83151022 -38692834 - PB1D10 SINE Alu -7 110 1 2 1219 28 0 0 0 chr11 83151117 83151145 -38692711 + AT_rich Low_complexity Low_complexity 1 28 0 2 1219 675 260 0 0 chr11 83151158 83151304 -38692552 - RSINE1 SINE B4 -17 148 3 2 1219 808 175 0 28 chr11 83151640 83151781 -38692075 + B1_Mus2 SINE Alu 1 137 -10 2 1219 1201 68 0 0 chr11 83151781 83151927 -38691929 + B1_Mm SINE Alu 1 147 0 2 1219 242 211 0 95 chr11 83151927 83152011 -38691845 + A-rich Low_complexity Low_complexity 1 76 0 2 1219 390 222 0 12 chr11 83152098 83152180 -38691676 + B3A SINE B2 1 81 -117 2 1219 324 0 0 0 chr11 83152180 83152216 -38691640 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1219 227 247 14 0 chr11 83152249 83152322 -38691534 + GA-rich Low_complexity Low_complexity 4 77 0 2 1219 229 203 15 45 chr11 83152533 83152600 -38691256 + ID2 SINE ID 16 80 -3 2 1219 238 61 0 0 chr11 83153137 83153170 -38690686 - B1F SINE Alu -107 42 10 2 1219 321 280 36 36 chr11 83153897 83154008 -38689848 + PB1D10 SINE Alu 1 111 -6 2 1219 215 362 29 0 chr11 83154021 83154090 -38689766 + ID SINE ID 3 73 -151 2 1219 843 147 7 0 chr11 83154292 83154435 -38689421 + B1_Mur4 SINE Alu 6 149 -1 2 1219 634 231 0 23 chr11 83154451 83154584 -38689272 + B3 SINE B2 82 211 -5 2 1219 445 244 67 42 chr11 83155730 83155850 -38688006 + RSINE1 SINE B4 43 165 0 2 1219 22 0 0 0 chr11 83155868 83155890 -38687966 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 1665 207 73 8 chr11 83156270 83156665 -38687191 - MTC LTR MaLR 0 421 1 2 1219 663 214 117 51 chr11 83156780 83156977 -38686879 + B3 SINE B2 1 210 -6 2 1219 22 0 0 0 chr11 83156977 83156999 -38686857 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 1025 248 81 33 chr11 83157253 83157612 -38686244 - MTE2b LTR MaLR -3 376 1 2 1219 446 250 0 9 chr11 83157686 83157795 -38686061 + PB1D10 SINE Alu 1 108 -9 2 1219 225 284 26 39 chr11 83157823 83157900 -38685956 + ID4 SINE ID 8 83 0 2 1219 256 0 0 0 chr11 83158055 83158093 -38685763 + L1Md_T LINE L1 6545 6582 0 2 1219 27 29 0 0 chr11 83158275 83158309 -38685547 + AT_rich Low_complexity Low_complexity 1 34 0 2 1219 514 227 0 70 chr11 83158534 83158662 -38685194 - PB1D9 SINE Alu 0 120 2 2 1219 673 254 70 27 chr11 83158947 83159133 -38684723 + B3 SINE B2 2 195 -3 2 1219 228 372 60 7 chr11 83159217 83159366 -38684490 + MurSatRep1 Unknown Unknown 114 270 -1867 2 1219 773 280 25 5 chr11 83159423 83159624 -38684232 + B3 SINE B2 8 212 -4 2 1219 441 292 20 46 chr11 83159657 83159808 -38684048 - RSINE1 SINE B4 -16 149 3 2 1219 565 261 160 18 chr11 83160648 83160850 -38683006 + B4A SINE B4 2 234 -58 2 1219 542 318 51 15 chr11 83160850 83161045 -38682811 + B3 SINE B2 2 203 -13 2 1219 282 218 69 18 chr11 83161205 83161303 -38682553 - B1F SINE Alu 0 149 17 3 1219 284 299 0 25 chr11 83161424 83161503 -38682353 + ID4_ SINE ID 2 78 -5 3 1219 1503 68 5 0 chr11 83162112 83162304 -38681552 - B2_Mm1a SINE B2 0 193 1 3 1219 235 342 57 52 chr11 83162528 83162722 -38681134 - ORR1D2 LTR MaLR -67 303 109 3 1219 1046 274 43 21 chr11 83162726 83163054 -38680802 + MTEb LTR MaLR 45 379 0 3 1219 467 335 51 11 chr11 83163196 83163371 -38680485 - ORR1E LTR MaLR -177 182 1 3 1219 195 186 0 0 chr11 83163945 83163988 -38679868 + T-rich Low_complexity Low_complexity 88 130 0 3 1219 1177 56 14 0 chr11 83163990 83164134 -38679722 - B1_Mus2 SINE Alu 0 147 2 3 1219 259 257 43 0 chr11 83164269 83164339 -38679517 - RSINE1 SINE B4 -45 120 48 3 1219 708 181 8 0 chr11 83165040 83165167 -38678689 + ID_B1 SINE B4 86 213 -11 3 1219 314 118 250 0 chr11 83166264 83166332 -38677524 + B4A SINE B4 1 85 -207 3 1219 705 196 15 8 chr11 83166365 83166499 -38677357 + B1_Mus1 SINE Alu 2 136 -12 3 1219 508 262 42 7 chr11 83166533 83166675 -38677181 + B4 SINE B4 72 218 -74 3 1219 701 180 8 8 chr11 83166686 83166815 -38677041 + B1_Mur1 SINE Alu 21 149 0 3 1219 277 82 5 0 chr11 83166922 83166967 -38676889 - B3 SINE B2 -89 109 63 3 1219 440 287 0 9 chr11 83167486 83167602 -38676254 - PB1D10 SINE Alu 0 117 3 3 1219 557 189 100 23 chr11 83167804 83167934 -38675922 - B1_Mus2 SINE Alu -6 141 2 3 1219 198 0 0 0 chr11 83168079 83168101 -38675755 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1219 359 235 59 0 chr11 83168151 83168236 -38675620 + RSINE1 SINE B4 43 132 -33 3 1219 202 73 24 24 chr11 83168334 83168376 -38675480 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 3 1219 626 135 173 8 chr11 83168406 83168533 -38675323 - B1_Mur4 SINE Alu -2 148 1 3 1219 1203 210 99 45 chr11 83170184 83170518 -38673338 + MT2A LTR ERVL 4 355 -178 3 1219 2260 241 103 58 chr11 83170879 83171049 -38672807 - RCHARR1 DNA MER1_type -9 965 814 3 1219 648 258 84 20 chr11 83171049 83171251 -38672605 - B3 SINE B2 0 216 2 3 1219 2260 241 103 58 chr11 83171251 83171969 -38671887 - RCHARR1 DNA MER1_type -161 813 37 3 1219 228 271 53 53 chr11 83172477 83172590 -38671266 + B1F SINE Alu 37 149 0 3 1219 306 339 122 0 chr11 83172830 83172945 -38670911 - L2a LINE L2 -5 3421 3293 3 1219 311 92 61 15 chr11 83173625 83173691 -38670165 - RMER17C LTR ERVK -135 275 207 3 1219 538 237 26 0 chr11 83174230 83174344 -38669512 + PB1D10 SINE Alu 1 117 0 3 1219 987 166 106 5 chr11 83175106 83175294 -38668562 - B3 SINE B2 -9 207 1 3 1219 689 132 61 81 chr11 83175431 83175579 -38668277 + B1_Mur1 SINE Alu 3 147 -2 3 1219 240 35 0 0 chr11 83175893 83175922 -38667934 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1219 197 266 80 95 chr11 83176163 83176300 -38667556 + MER5B DNA MER1_type 3 137 -41 3 1219 188 100 25 0 chr11 83179580 83179620 -38664236 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 3 1219 244 254 84 0 chr11 83179721 83179792 -38664064 - PB1D10 SINE Alu -29 88 12 3 1219 494 80 27 0 chr11 83180178 83180253 -38663603 + (TCCC)n Simple_repeat Simple_repeat 1 77 0 3 1219 276 295 26 0 chr11 83181704 83181775 -38662081 + ID4 SINE ID 2 74 -9 3 1219 180 97 0 0 chr11 83181775 83181806 -38662050 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 1219 238 330 11 22 chr11 83181806 83181838 -38662018 + BC1_Mm scRNA scRNA 75 105 -47 3 1219 754 133 64 36 chr11 83181852 83181992 -38661864 - B1_Mus2 SINE Alu -2 145 2 3 1219 375 259 72 29 chr11 83182031 83182170 -38661686 + B1F SINE Alu 5 149 0 3 1219 24 0 0 0 chr11 83182579 83182603 -38661253 + AT_rich Low_complexity Low_complexity 1 24 0 3 1219 531 0 0 0 chr11 83182603 83182662 -38661194 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1219 1079 77 140 12 chr11 83182820 83182991 -38660865 + B2_Mm1t SINE B2 1 193 0 3 1219 337 289 86 0 chr11 83183905 83184033 -38659823 - ID_B1 SINE B4 -2 222 84 3 1219 1142 37 0 0 chr11 83184049 83184185 -38659671 + B1_Mus2 SINE Alu 2 137 -10 3 1219 213 65 0 0 chr11 83184185 83184216 -38659640 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1219 871 196 40 30 chr11 83184225 83184425 -38659431 + B3 SINE B2 4 205 -11 3 1219 823 108 8 8 chr11 83185316 83185446 -38658410 + B3 SINE B2 1 130 -86 3 1219 652 320 126 8 chr11 83186019 83186274 -38657582 - B4A SINE B4 -5 287 3 3 1219 929 246 71 26 chr11 83186283 83186550 -38657306 - B4 SINE B4 -12 280 2 3 1219 242 329 13 13 chr11 83186666 83186743 -38657113 + ID4 SINE ID 1 77 -6 3 1219 386 308 24 19 chr11 83187180 83187297 -38656559 + B1F SINE Alu 2 125 -24 3 1219 211 300 12 70 chr11 83187377 83187463 -38656393 - ID4 SINE ID -1 82 2 3 1219 254 263 213 22 chr11 83187471 83187607 -38656249 - MER3 DNA MER1_type -1 208 47 3 1219 294 266 80 8 chr11 83187660 83187785 -38656071 - L1MEg LINE L1 -4940 1144 1011 3 1219 931 113 43 0 chr11 83188187 83188328 -38655528 - B1_Mus1 SINE Alu 0 148 2 3 1219 1531 47 0 5 chr11 83188525 83188719 -38655137 - L1Md_F2 LINE L1 -12 6570 6378 3 1219 517 221 232 6 chr11 83188803 83188971 -38654885 - ID_B1 SINE B4 -16 208 3 3 1219 465 286 57 25 chr11 83189036 83189194 -38654662 + RSINE1 SINE B4 3 165 0 3 1219 1191 35 14 0 chr11 83190141 83190283 -38653573 - B1_Mm SINE Alu -2 145 2 3 1219 234 0 0 0 chr11 83190449 83190475 -38653381 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1219 907 174 146 20 chr11 83190513 83190712 -38653144 - MTD LTR MaLR 0 419 196 3 1219 739 30 0 29 chr11 83190751 83190853 -38653003 - B1_Mm SINE Alu 0 147 49 3 1219 1055 197 9 14 chr11 83190842 83191053 -38652803 - MTD LTR MaLR -209 210 1 3 1219 468 191 101 93 chr11 83191068 83191207 -38652649 - MTD LTR MaLR -92 327 188 3 1219 213 94 0 0 chr11 83191210 83191242 -38652614 + (TCC)n Simple_repeat Simple_repeat 2 33 0 3 1219 244 113 0 54 chr11 83191236 83191292 -38652564 + T-rich Low_complexity Low_complexity 4 56 0 3 1219 699 147 35 56 chr11 83191292 83191436 -38652420 - B1_Mur2 SINE Alu 0 149 9 3 1219 990 219 14 9 chr11 83191438 83191659 -38652197 - MTD LTR MaLR -197 222 1 3 1219 239 250 19 0 chr11 83192564 83192616 -38651240 + tRNA-Ala-GCY_ tRNA tRNA 3 55 -20 3 1219 242 281 0 0 chr11 83192971 83193028 -38650828 - PB1 SINE Alu -70 57 1 3 1219 1868 152 76 64 chr11 83193133 83193554 -38650302 - RLTR18B LTR ERVK -83 429 4 3 1219 445 256 65 16 chr11 83193573 83193696 -38650160 - RSINE1 SINE B4 -35 130 2 3 1219 283 257 0 26 chr11 83193716 83193792 -38650064 + ID4 SINE ID 4 77 -6 3 1219 279 244 11 44 chr11 83193792 83193806 -38650050 + ID_B1 SINE B4 4 90 -134 3 1219 905 182 119 5 chr11 83193998 83194191 -38649665 + B3 SINE B2 2 216 0 3 1219 263 272 74 0 chr11 83194496 83194577 -38649279 + B1F SINE Alu 1 87 -62 3 1219 682 174 16 8 chr11 83194699 83194821 -38649035 + B1_Mur1 SINE Alu 1 123 -26 3 1219 639 264 34 73 chr11 83195167 83195371 -38648485 + B3A SINE B2 3 198 0 3 1219 215 152 0 21 chr11 83197203 83197250 -38646606 + (TTAGGC)n Simple_repeat Simple_repeat 3 48 0 3 1219 446 303 0 0 chr11 83197436 83197545 -38646311 - PB1D10 SINE Alu -5 112 4 3 1219 224 353 15 0 chr11 83197487 83197555 -38646301 - B4A SINE B4 -146 146 78 3 1219 232 290 93 74 chr11 83197554 83197662 -38646194 - B1F SINE Alu -6 111 2 3 1219 477 250 57 23 chr11 83197920 83198096 -38645760 + RLTR41 LTR ERV1 264 445 -1 3 1219 516 187 203 0 chr11 83198136 83198259 -38645597 - B1_Mur2 SINE Alu 0 149 2 3 1219 338 240 136 29 chr11 83198297 83198391 -38645465 + B1_Mur1 SINE Alu 33 139 -10 3 1219 515 16 16 0 chr11 83198391 83198455 -38645401 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 1219 440 245 113 25 chr11 83198691 83198850 -38645006 + B3A SINE B2 9 181 -17 3 1219 251 276 33 54 chr11 83199706 83199798 -38644058 - MIRm SINE MIR -161 107 18 3 1219 1785 230 103 49 chr11 83200843 83201415 -38642441 + Lx7 LINE L1 6805 7407 -289 3 1219 1089 80 0 0 chr11 83201487 83201624 -38642232 - B1_Mus1 SINE Alu -11 137 1 3 1219 225 140 40 0 chr11 83201624 83201674 -38642182 + T-rich Low_complexity Low_complexity 1 52 0 3 1219 351 226 65 47 chr11 83201757 83201864 -38641992 - PB1D7 SINE Alu -1 119 11 3 1219 278 279 157 37 chr11 83202332 83202466 -38641390 + MIRb SINE MIR 38 187 -81 3 1219 478 259 34 17 chr11 83202570 83202688 -38641168 + B4 SINE B4 157 276 -16 3 1219 930 171 203 0 chr11 83202786 83202973 -38640883 - URR1B DNA MER1_type 0 225 1 3 1219 228 322 11 11 chr11 83203554 83203642 -38640214 + MIR SINE MIR 63 150 -112 3 1219 241 288 69 81 chr11 83203781 83203810 -38640046 + B4A SINE B4 75 177 -115 3 1219 823 86 23 0 chr11 83203810 83203938 -38639918 + B1_Mur4 SINE Alu 20 150 0 3 1219 241 288 69 81 chr11 83203938 83203955 -38639901 + B4A SINE B4 178 246 -46 3 1219 249 273 23 14 chr11 83204426 83204507 -38639349 + PB1D10 SINE Alu 14 98 -51 3 1219 557 211 24 24 chr11 83204540 83204666 -38639190 + B1_Mur1 SINE Alu 12 137 -12 3 1219 414 0 0 0 chr11 83207107 83207153 -38636703 + (TGG)n Simple_repeat Simple_repeat 2 47 0 3 1219 578 124 213 8 chr11 83207153 83207275 -38636581 - B1_Mur3 SINE Alu 0 149 3 3 1219 1193 54 0 0 chr11 83207454 83207601 -38636255 + B1_Mus1 SINE Alu 2 148 0 4 1219 273 123 30 15 chr11 83207601 83207667 -38636189 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 4 1219 232 231 40 3 chr11 83208101 83208160 -38635696 - PB1D10 SINE Alu -80 69 10 4 1219 22 35 0 0 chr11 83208349 83208378 -38635478 + AT_rich Low_complexity Low_complexity 1 29 0 4 1219 316 237 13 0 chr11 83208924 83209000 -38634856 - B3 SINE B2 -4 212 136 4 1219 1077 148 10 239 chr11 83209000 83209293 -38634563 + URR1A DNA MER1_type 1 226 0 4 1219 323 242 15 0 chr11 83209309 83209375 -38634481 - B3 SINE B2 -144 72 6 4 1219 766 141 25 112 chr11 83209846 83210006 -38633850 - B1_Mus2 SINE Alu 0 147 2 4 1219 1180 237 53 106 chr11 83210570 83210966 -38632890 + MTE2b LTR MaLR 1 375 -4 4 1219 328 222 27 12 chr11 83211745 83211848 -38632008 + PB1D9 SINE Alu 6 118 -2 4 1219 611 218 162 19 chr11 83211856 83212072 -38631784 + B4A SINE B4 1 248 -44 4 1219 477 234 32 116 chr11 83212791 83212946 -38630910 - B1_Mur2 SINE Alu -7 142 1 4 1219 248 286 0 0 chr11 83213221 83213277 -38630579 + RSINE1 SINE B4 4 59 -106 4 1219 29 47 0 0 chr11 83213345 83213388 -38630468 + AT_rich Low_complexity Low_complexity 1 43 0 4 1219 333 269 19 9 chr11 83213407 83213512 -38630344 + PB1D10 SINE Alu 10 115 -2 4 1219 513 29 14 0 chr11 83213891 83213960 -38629896 + L1_Mus2 LINE L1 6497 6566 0 4 1219 239 54 27 0 chr11 83214050 83214087 -38629769 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1219 661 176 16 16 chr11 83214106 83214227 -38629629 - B1_Mur1 SINE Alu -1 148 28 4 1219 256 235 73 0 chr11 83214237 83214305 -38629551 - L1MD2 LINE L1 -376 5983 5911 4 1219 929 141 52 14 chr11 83214378 83214593 -38629263 - ORR1B2 LTR MaLR -2 376 1 4 1219 710 214 13 27 chr11 83215137 83215286 -38628570 + B1_Mur2 SINE Alu 3 149 0 4 1219 359 290 0 0 chr11 83215452 83215545 -38628311 - B4 SINE B4 -199 93 1 4 1219 234 299 169 7 chr11 83216988 83217136 -38626720 - MIR3 SINE MIR -6 202 31 4 1219 231 36 0 0 chr11 83218619 83218647 -38625209 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1219 356 244 93 115 chr11 83219406 83219545 -38624311 + RSINE1 SINE B4 8 143 -22 4 1219 870 246 119 42 chr11 83221792 83222127 -38621729 + MTEb LTR MaLR 11 371 -8 4 1219 412 267 81 20 chr11 83222442 83222591 -38621265 + MIRb SINE MIR 98 255 -7 4 1219 43 20 0 0 chr11 83223231 83223281 -38620575 + GC_rich Low_complexity Low_complexity 1 50 0 4 1219 22 56 0 0 chr11 83223314 83223350 -38620506 + GC_rich Low_complexity Low_complexity 1 36 0 4 1219 246 274 0 128 chr11 83224659 83224776 -38619080 - MIR SINE MIR -157 105 4 4 1219 354 349 32 26 chr11 83226483 83226639 -38617217 - L2b LINE L2 -8 3367 3211 4 1219 284 236 42 0 chr11 83227693 83227765 -38616091 - ID2 SINE ID -4 79 5 4 1219 418 191 92 37 chr11 83227773 83227882 -38615974 - PB1D10 SINE Alu -1 116 2 4 1219 694 137 90 15 chr11 83227947 83228080 -38615776 - B1_Mur2 SINE Alu 0 149 7 4 1219 249 287 20 81 chr11 83228311 83228349 -38615507 - L1MC LINE L1 -2389 5493 5461 4 1219 999 164 118 52 chr11 83228349 83228561 -38615295 + URR1A DNA MER1_type 1 226 0 4 1219 249 287 20 81 chr11 83228561 83228670 -38615186 - L1MC LINE L1 -2422 5460 5355 4 1219 277 351 75 0 chr11 83228720 83228753 -38615103 - B1_Mm SINE Alu 0 147 4 4 1219 423 280 0 10 chr11 83228753 83228854 -38615002 - ID_B1 SINE B4 -40 184 85 4 1219 267 152 0 0 chr11 83228866 83228912 -38614944 + CT-rich Low_complexity Low_complexity 2 47 0 4 1219 218 0 0 87 chr11 83228907 83228953 -38614903 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 4 1219 555 192 145 46 chr11 83228953 83229084 -38614772 - B1_Mm SINE Alu -1 146 3 4 1219 253 328 43 36 chr11 83230119 83230258 -38613598 - ID_B1 SINE B4 -77 147 8 4 1219 368 277 0 0 chr11 83230541 83230629 -38613227 + ID_B1 SINE B4 73 156 -68 4 1220 435 237 16 11 chr11 83231655 83231767 -38612089 - PB1D10 SINE Alu -21 128 14 4 1220 280 347 66 7 chr11 83231849 83232000 -38611856 + MIR SINE MIR 82 241 -21 4 1220 206 312 135 18 chr11 83234008 83234119 -38609737 + MIRb SINE MIR 5 128 -140 4 1220 216 97 0 0 chr11 83234591 83234622 -38609234 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1220 981 146 0 0 chr11 83236910 83237075 -38606781 + (GA)n Simple_repeat Simple_repeat 2 166 0 4 1220 351 367 0 0 chr11 83237533 83237642 -38606214 - PB1D10 SINE Alu -8 109 1 4 1220 414 375 62 0 chr11 83238113 83238305 -38605551 + MamRep1879 DNA hAT? 1 204 -12 4 1220 1119 76 7 7 chr11 83239993 83240138 -38603718 + B1_Mus2 SINE Alu 3 147 0 4 1220 210 311 13 13 chr11 83240248 83240323 -38603533 + GA-rich Low_complexity Low_complexity 4 78 0 4 1220 305 348 69 22 chr11 83240410 83240588 -38603268 - MIRb SINE MIR -46 222 32 4 1220 1157 108 119 0 chr11 83241796 83241990 -38601866 + URR1A DNA MER1_type 10 226 0 4 1220 234 240 198 0 chr11 83243638 83243734 -38600122 + MIRc SINE MIR 99 213 -55 4 1220 207 261 0 21 chr11 83243916 83243963 -38599893 + polypyrimidine Low_complexity Low_complexity 3 48 0 4 1220 180 77 0 0 chr11 83243964 83243990 -38599866 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1220 343 289 35 9 chr11 83243990 83244001 -38599855 - L2a LINE L2 -1 3425 3415 4 1220 943 142 0 57 chr11 83244001 83244158 -38599698 - B1_Mus1 SINE Alu 0 148 1 4 1220 343 289 35 9 chr11 83244158 83244261 -38599595 - L2a LINE L2 -12 3414 3308 4 1220 493 250 59 29 chr11 83244323 83244459 -38599397 + B1F1 SINE Alu 10 149 0 4 1220 334 319 210 25 chr11 83244459 83244697 -38599159 - L2a LINE L2 -145 3281 3000 4 1220 761 234 117 20 chr11 83244738 83244934 -38598922 + B3 SINE B2 1 215 -1 4 1220 973 217 39 0 chr11 83244941 83245148 -38598708 + B3 SINE B2 2 216 0 4 1220 1417 73 11 0 chr11 83245171 83245350 -38598506 + B2_Mm1t SINE B2 1 181 -12 4 1220 260 161 267 170 chr11 83245410 83245545 -38598311 + B2_Mm2 SINE B2 47 194 -1 4 1220 303 140 0 0 chr11 83245545 83245595 -38598261 + (GGA)n Simple_repeat Simple_repeat 2 51 0 4 1220 820 151 119 36 chr11 83245600 83245793 -38598063 + B3 SINE B2 8 216 0 4 1220 591 332 10 5 chr11 83246116 83246310 -38597546 - MER20 DNA MER1_type -9 210 16 4 1220 843 186 64 0 chr11 83246404 83246576 -38597280 - B3 SINE B2 0 216 34 4 1220 441 0 0 0 chr11 83246890 83246939 -38596917 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1220 242 289 32 53 chr11 83247227 83247322 -38596534 - MLT1J LTR MaLR -419 93 1 4 1220 1203 118 16 11 chr11 83247389 83247578 -38596278 + B2_Mm2 SINE B2 6 195 0 4 1220 707 267 12 47 chr11 83247800 83247969 -38595887 - RSINE1 SINE B4 0 165 3 4 1220 962 236 54 0 chr11 83248097 83248300 -38595556 + B3 SINE B2 2 215 -1 4 1220 383 247 11 63 chr11 83249816 83249911 -38593945 - PB1D10 SINE Alu -17 100 11 4 1220 1247 93 32 16 chr11 83250153 83250339 -38593517 + B2_Mm2 SINE B2 2 190 -5 4 1220 967 207 56 0 chr11 83250467 83250665 -38593191 - B3 SINE B2 -4 212 4 4 1220 196 237 24 95 chr11 83250926 83251010 -38592846 - MIRb SINE MIR -155 113 36 4 1220 238 192 169 52 chr11 83251516 83251593 -38592263 + MT2B LTR ERVL 168 253 -348 4 1220 565 122 93 9 chr11 83251526 83251634 -38592222 + B1_Mur4 SINE Alu 34 150 0 4 1220 218 29 0 56 chr11 83251668 83251704 -38592152 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1220 552 233 15 23 chr11 83251719 83251851 -38592005 - B1F SINE Alu -10 139 9 4 1220 1193 68 7 0 chr11 83251878 83252025 -38591831 - B1_Mus1 SINE Alu 0 148 1 4 1220 1015 267 102 10 chr11 83252338 83252633 -38591223 - MTEb LTR MaLR -6 373 52 4 1220 205 51 51 0 chr11 83252633 83252672 -38591184 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 1220 261 0 0 0 chr11 83252696 83252725 -38591131 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1220 450 180 22 11 chr11 83253174 83253264 -38590592 + B1F2 SINE Alu 52 142 -7 4 1220 192 365 87 0 chr11 83253379 83253494 -38590362 - MIR SINE MIR -11 251 127 4 1220 231 292 0 0 chr11 83253675 83253740 -38590116 + C-rich Low_complexity Low_complexity 1 65 0 4 1220 192 40 0 0 chr11 83257915 83257940 -38585916 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 4 1220 329 273 67 40 chr11 83258687 83258826 -38585030 + MIR SINE MIR 8 136 -72 4 1220 543 84 8 25 chr11 83258827 83258931 -38584925 + B1_Mus1 SINE Alu 1 101 -48 4 1220 223 163 0 0 chr11 83259016 83259059 -38584797 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1220 580 239 7 80 chr11 83259062 83259212 -38584644 - RSINE1 SINE B4 -19 146 8 4 1220 225 0 0 0 chr11 83259245 83259270 -38584586 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1220 206 32 32 0 chr11 83259373 83259404 -38584452 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 4 1220 974 53 8 0 chr11 83259404 83259536 -38584320 - B1_Mm SINE Alu 0 147 15 4 1220 455 226 69 83 chr11 83259406 83259551 -38584305 - B4 SINE B4 -69 223 81 4 1220 381 242 44 0 chr11 83259573 83259664 -38584192 - PB1D9 SINE Alu -6 114 20 4 1220 721 236 114 10 chr11 83259693 83259886 -38583970 - B3 SINE B2 -3 213 1 4 1220 323 213 187 13 chr11 83259915 83260074 -38583782 - B4A SINE B4 -73 219 1 4 1220 219 202 25 82 chr11 83260074 83260123 -38583733 - B1F2 SINE Alu -109 40 1 4 1220 261 343 28 19 chr11 83260780 83260887 -38582969 - MIRc SINE MIR -30 238 131 5 1220 246 284 58 19 chr11 83263360 83263464 -38580392 + MIRb SINE MIR 113 220 -48 5 1220 799 208 84 46 chr11 83264246 83264483 -38579373 + L1MB8 LINE L1 5925 6170 -8 5 1220 202 308 15 0 chr11 83265489 83265554 -38578302 + MIRb SINE MIR 10 75 -193 5 1220 252 320 58 72 chr11 83266275 83266413 -38577443 - B1_Mus1 SINE Alu 0 148 13 5 1220 654 298 10 55 chr11 83266289 83266488 -38577368 - ID_B1 SINE B4 -18 206 17 5 1220 237 299 39 13 chr11 83266422 83266500 -38577356 - BC1_Mm scRNA scRNA -71 81 2 5 1220 804 172 22 0 chr11 83266516 83266650 -38577206 - B1_Mur1 SINE Alu -11 138 2 5 1220 293 268 38 85 chr11 83266873 83266922 -38576934 + PB1D10 SINE Alu 15 115 -2 5 1220 318 193 0 0 chr11 83266922 83266979 -38576877 + ID_B1 SINE B4 167 223 -1 5 1220 948 180 103 0 chr11 83266983 83267177 -38576679 + B3 SINE B2 2 215 -1 5 1220 464 252 37 104 chr11 83267198 83267215 -38576641 + B4 SINE B4 77 225 -63 5 1220 934 112 14 0 chr11 83267215 83267358 -38576498 + B1_Mur4 SINE Alu 6 150 0 5 1220 30 0 0 0 chr11 83267367 83267397 -38576459 + AT_rich Low_complexity Low_complexity 1 30 0 5 1220 401 298 137 0 chr11 83267791 83267915 -38575941 + B1F1 SINE Alu 7 147 -2 5 1220 213 296 160 26 chr11 83269416 83269572 -38574284 + MIR3 SINE MIR 12 188 -20 5 1220 626 264 30 48 chr11 83269854 83270021 -38573835 + RSINE1 SINE B4 2 165 0 5 1220 242 361 0 0 chr11 83270026 83270109 -38573747 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1220 427 319 0 16 chr11 83270195 83270316 -38573540 - PB1D7 SINE Alu -1 119 1 5 1220 213 323 97 42 chr11 83270465 83270630 -38573226 - MIRc SINE MIR -49 219 46 5 1220 396 239 11 0 chr11 83271220 83271308 -38572548 - PB1D10 SINE Alu -5 112 24 5 1220 432 183 32 11 chr11 83272179 83272273 -38571583 + PB1D10 SINE Alu 22 117 0 5 1220 212 250 0 0 chr11 83272335 83272379 -38571477 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1220 451 169 139 33 chr11 83272521 83272643 -38571213 - B1_Mur3 SINE Alu -5 144 10 5 1220 1202 56 0 0 chr11 83272681 83272824 -38571032 - B1_Mus1 SINE Alu -5 143 1 5 1220 744 165 105 0 chr11 83272877 83273010 -38570846 - B1_Mus2 SINE Alu 0 147 1 5 1220 316 304 111 42 chr11 83273060 83273076 -38570780 + ID_B1 SINE B4 70 223 -1 5 1220 383 282 0 86 chr11 83273076 83273204 -38570652 + PB1D7 SINE Alu 3 119 -1 5 1220 318 191 0 0 chr11 83273222 83273285 -38570571 + L1MB8 LINE L1 5899 5961 -217 5 1220 331 347 35 15 chr11 83273898 83274097 -38569759 - L1MEc LINE L1 -6028 372 170 5 1220 297 325 50 25 chr11 83274154 83274274 -38569582 + MLT1G LTR MaLR 441 563 -28 5 1220 319 291 23 62 chr11 83274220 83274275 -38569581 + YREP_Mm Unknown Unknown 128 182 -1630 5 1220 230 56 0 27 chr11 83274275 83274312 -38569544 + (GTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1220 319 291 23 62 chr11 83274312 83274432 -38569424 + YREP_Mm Unknown Unknown 183 296 -1516 5 1220 769 201 0 0 chr11 83274315 83274454 -38569402 - ID_B1 SINE B4 -6 218 80 5 1220 241 360 0 0 chr11 83274664 83274750 -38569106 - MIRb SINE MIR -27 241 156 5 1220 1249 41 0 0 chr11 83274864 83275010 -38568846 - B1_Mus2 SINE Alu 0 147 2 5 1220 189 74 0 0 chr11 83275592 83275619 -38568237 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 5 1220 347 264 121 65 chr11 83276833 83277048 -38566808 + MIRb SINE MIR 22 248 -20 5 1220 233 266 89 0 chr11 83277640 83277719 -38566137 - MER91A DNA Tip100 -36 160 75 5 1220 312 299 141 18 chr11 83277895 83278065 -38565791 + MER53 DNA hAT 3 193 0 5 1220 706 207 121 52 chr11 83278523 83278696 -38565160 + B3A SINE B2 4 188 -10 5 1220 468 51 0 0 chr11 83278738 83278797 -38565059 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 1220 754 222 40 35 chr11 83278797 83278963 -38564893 - B3 SINE B2 -48 168 2 5 1220 642 174 165 0 chr11 83278990 83279105 -38564751 + B1_Mur3 SINE Alu 1 134 -15 5 1220 219 277 71 24 chr11 83279159 83279244 -38564612 - MIRb SINE MIR -121 147 59 5 1220 321 200 86 0 chr11 83280287 83280357 -38563499 + MIRb SINE MIR 22 97 -171 5 1220 296 150 33 0 chr11 83281286 83281346 -38562510 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 5 1220 1273 204 0 18 chr11 83281357 83281577 -38562279 + B3 SINE B2 1 216 0 5 1220 253 260 120 45 chr11 83281765 83281898 -38561958 + L2c LINE L2 2765 2907 -512 5 1220 280 291 122 41 chr11 83281899 83282093 -38561763 - LTR33A LTR ERVL -80 451 256 5 1220 770 258 68 68 chr11 83282232 83282252 -38561604 - B4A SINE B4 0 292 273 5 1220 2246 158 218 19 chr11 83282252 83282730 -38561126 - RMER15 LTR ERVL 0 575 3 5 1220 770 258 68 68 chr11 83282730 83282959 -38560897 - B4A SINE B4 -20 272 44 5 1220 1514 74 0 11 chr11 83283252 83283443 -38560413 + B2_Mm2 SINE B2 2 190 -5 5 1220 219 365 103 0 chr11 83283759 83283885 -38559971 + MIRb SINE MIR 77 215 -53 5 1220 514 278 48 0 chr11 83283949 83284075 -38559781 - RSINE1 SINE B4 -33 132 1 5 1220 343 247 76 33 chr11 83284168 83284260 -38559596 - PB1D10 SINE Alu -17 100 5 5 1220 242 364 76 76 chr11 83284384 83284652 -38559204 + L2c LINE L2 3090 3357 -18 5 1220 469 281 67 43 chr11 83285222 83285430 -38558426 - ID_B1 SINE B4 -11 213 1 5 1220 184 333 0 31 chr11 83285704 83285769 -38558087 + L2b LINE L2 3102 3164 -211 5 1220 223 265 114 57 chr11 83285877 83285965 -38557891 + MIRb SINE MIR 123 215 -53 5 1220 533 217 125 0 chr11 83287723 83287843 -38556013 - B1_Mur1 SINE Alu -12 137 3 5 1220 343 258 67 0 chr11 83288285 83288374 -38555482 - PB1D10 SINE Alu -6 111 17 5 1220 23 0 0 0 chr11 83289032 83289055 -38554801 + AT_rich Low_complexity Low_complexity 1 23 0 5 1220 352 185 172 11 chr11 83289118 83289211 -38554645 - PB1D9 SINE Alu -7 113 6 5 1220 382 369 78 0 chr11 83289525 83289666 -38554190 - RSINE1 SINE B4 -5 160 9 5 1220 302 347 20 0 chr11 83289793 83289891 -38553965 + PB1D10 SINE Alu 5 104 -13 5 1220 1303 96 15 50 chr11 83289895 83290093 -38553763 - B2_Mm2 SINE B2 -2 193 3 5 1220 225 216 20 0 chr11 83290141 83290192 -38553664 - ID_B1 SINE B4 -1 223 172 5 1220 376 174 172 11 chr11 83290147 83290240 -38553616 - PB1D9 SINE Alu -7 113 6 5 1220 1452 65 37 11 chr11 83290255 83290443 -38553413 - B2_Mm2 SINE B2 0 195 3 5 1220 381 320 8 38 chr11 83290575 83290708 -38553148 + B3A SINE B2 36 164 -34 5 1220 217 244 0 0 chr11 83291286 83291327 -38552529 + B1F SINE Alu 1 41 -108 5 1220 1513 192 146 25 chr11 83291354 83291717 -38552139 - MTC LTR MaLR 0 407 1 5 1220 4950 172 89 57 chr11 83291719 83291820 -38552036 - MTC-int LTR MaLR -2 1256 1150 5 1220 1476 54 33 0 chr11 83291820 83292004 -38551852 + B2_Mm1t SINE B2 2 191 -2 5 1220 4950 172 89 57 chr11 83292004 83293102 -38550754 - MTC-int LTR MaLR -109 1149 19 5 1220 1821 156 130 16 chr11 83293102 83293480 -38550376 - MTC LTR MaLR 0 421 1 5 1220 434 241 113 57 chr11 83294838 83294979 -38548877 - B1F SINE Alu 0 149 1 5 1220 667 184 35 0 chr11 83295209 83295323 -38548533 - PB1D9 SINE Alu -2 118 1 5 1220 432 280 45 0 chr11 83295582 83295685 -38548171 + B1F SINE Alu 2 108 -12 5 1220 723 208 74 168 chr11 83295887 83296089 -38547767 - B3A SINE B2 -4 191 9 5 1220 841 235 53 16 chr11 83296184 83296374 -38547482 - B3 SINE B2 -18 198 2 5 1220 477 0 0 0 chr11 83297024 83297077 -38546779 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1220 255 152 0 0 chr11 83297085 83297131 -38546725 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 5 1220 236 279 59 79 chr11 83297257 83297275 -38546581 + MT2B2 LTR ERVL 153 168 -416 5 1220 546 200 160 0 chr11 83297275 83297400 -38546456 + B1_Mus2 SINE Alu 1 145 -2 5 1220 763 209 7 21 chr11 83297492 83297634 -38546222 - B1_Mur2 SINE Alu -2 147 8 5 1220 25 65 0 0 chr11 83298225 83298271 -38545585 + AT_rich Low_complexity Low_complexity 1 46 0 5 1220 305 260 78 0 chr11 83298644 83298721 -38545135 - ID4 SINE ID 0 83 1 5 1220 910 219 51 93 chr11 83298770 83298986 -38544870 - B3 SINE B2 -8 208 2 5 1220 238 258 32 0 chr11 83298995 83299057 -38544799 - B1F1 SINE Alu -2 147 84 5 1220 839 179 0 48 chr11 83299534 83299681 -38544175 - B1_Mus1 SINE Alu -6 142 3 5 1220 1270 48 0 14 chr11 83299723 83299871 -38543985 + B1_Mus1 SINE Alu 3 148 0 5 1220 216 0 0 0 chr11 83299871 83299895 -38543961 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1220 222 91 0 0 chr11 83300294 83300327 -38543529 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1220 278 196 529 0 chr11 83300507 83300645 -38543211 - B3 SINE B2 -4 212 2 5 1220 1176 120 32 16 chr11 83301050 83301236 -38542620 + B2_Mm1t SINE B2 2 190 -3 5 1220 263 295 12 37 chr11 83301635 83301716 -38542140 - ID4_ SINE ID -2 81 3 5 1220 1219 47 0 51 chr11 83301978 83302134 -38541722 - B1_Mus1 SINE Alu 0 148 1 5 1220 917 121 42 21 chr11 83303875 83304019 -38539837 + B1_Mur3 SINE Alu 2 148 -1 5 1220 1514 78 21 0 chr11 83304096 83304287 -38539569 - B2_Mm2 SINE B2 0 195 1 5 1220 21 36 0 0 chr11 83304377 83304405 -38539451 + AT_rich Low_complexity Low_complexity 1 28 0 5 1220 1716 37 0 0 chr11 83304414 83304601 -38539255 - B2_Mm1a SINE B2 -6 187 1 5 1220 311 258 97 0 chr11 83304852 83304945 -38538911 - MER58B DNA MER1_type -84 257 156 5 1220 395 167 118 12 chr11 83304956 83305041 -38538815 + B1_Mur2 SINE Alu 14 107 -42 6 1220 1259 97 21 31 chr11 83305111 83305302 -38538554 - B2_Mm2 SINE B2 -6 189 1 6 1220 1032 72 0 0 chr11 83305392 83305530 -38538326 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 6 1220 322 176 0 50 chr11 83306125 83306185 -38537671 + PB1D9 SINE Alu 1 57 -63 6 1220 640 164 19 0 chr11 83306295 83306399 -38537457 + B1_Mur4 SINE Alu 2 107 -43 6 1220 323 296 83 21 chr11 83306399 83306440 -38537416 + B4A SINE B4 87 240 -52 6 1220 391 253 344 55 chr11 83306920 83307083 -38536773 - B3 SINE B2 -4 212 3 6 1220 238 267 0 16 chr11 83307617 83307678 -38536178 - MER5A1 DNA MER1_type -2 164 105 6 1220 663 240 99 29 chr11 83307837 83308009 -38535847 - B3A SINE B2 -6 192 9 6 1220 911 65 0 47 chr11 83308035 83308164 -38535692 + B1_Mus1 SINE Alu 26 148 0 6 1220 635 62 10 0 chr11 83308280 83308377 -38535479 + (CA)n Simple_repeat Simple_repeat 2 99 0 6 1220 827 36 9 0 chr11 83308439 83308550 -38535306 + (CA)n Simple_repeat Simple_repeat 2 113 0 6 1220 293 293 103 75 chr11 83308787 83308812 -38535044 + ID_B1 SINE B4 115 138 -86 6 1220 1889 224 66 41 chr11 83308812 83309325 -38534531 - RLTR11A2 LTR ERVK -1 526 1 6 1220 293 293 103 75 chr11 83309325 83309406 -38534450 + ID_B1 SINE B4 139 224 0 6 1220 207 88 0 0 chr11 83309918 83309952 -38533904 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 6 1220 324 0 0 0 chr11 83311491 83311527 -38532329 + (TTTAA)n Simple_repeat Simple_repeat 5 40 0 6 1220 21 0 0 0 chr11 83311900 83311921 -38531935 + AT_rich Low_complexity Low_complexity 1 21 0 6 1220 1268 234 126 4 chr11 83312832 83313175 -38530681 - MTD LTR MaLR 0 419 13 6 1220 285 162 0 0 chr11 83313543 83313611 -38530245 + T-rich Low_complexity Low_complexity 1 68 0 6 1220 524 226 35 9 chr11 83313644 83313760 -38530096 - PB1D7 SINE Alu 0 120 2 6 1220 216 277 0 0 chr11 83313995 83314042 -38529814 - ID4_ SINE ID 0 83 37 6 1220 628 234 8 8 chr11 83314060 83314189 -38529667 - B1_Mur4 SINE Alu -21 129 1 6 1220 269 231 32 161 chr11 83314084 83314208 -38529648 - MT2B LTR ERVL -344 257 150 6 1220 21 36 0 0 chr11 83314258 83314286 -38529570 + AT_rich Low_complexity Low_complexity 1 28 0 6 1220 630 295 40 6 chr11 83314324 83314498 -38529358 + B3A SINE B2 3 182 -16 6 1220 27 29 0 0 chr11 83314509 83314543 -38529313 + AT_rich Low_complexity Low_complexity 1 34 0 6 1220 1070 221 15 0 chr11 83314776 83314975 -38528881 - B3 SINE B2 -13 203 2 6 1220 350 319 17 17 chr11 83315184 83315302 -38528554 - MTD LTR MaLR -235 124 7 6 1220 222 116 0 0 chr11 83315397 83315440 -38528416 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1220 24 32 0 0 chr11 83315496 83315527 -38528329 + AT_rich Low_complexity Low_complexity 1 31 0 6 1220 399 154 245 19 chr11 83315527 83315633 -38528223 - B2_Mm2 SINE B2 -19 176 47 6 1220 1080 86 13 0 chr11 83315681 83315832 -38528024 - B2_Mm1t SINE B2 -39 154 2 6 1220 392 305 0 63 chr11 83316110 83316236 -38527620 - PB1D7 SINE Alu -1 119 2 6 1220 887 116 110 52 chr11 83316454 83316627 -38527229 - B2_Mm2 SINE B2 -12 183 1 6 1220 637 203 7 86 chr11 83316644 83316795 -38527061 - B1_Mus1 SINE Alu 0 148 10 6 1220 1196 185 35 5 chr11 83316857 83317058 -38526798 - B3 SINE B2 -6 210 4 6 1220 280 357 0 0 chr11 83318184 83318324 -38525532 + (TGG)n Simple_repeat Simple_repeat 2 141 0 6 1220 211 390 0 0 chr11 83318397 83318561 -38525295 + (TGG)n Simple_repeat Simple_repeat 2 165 0 6 1220 1072 90 81 130 chr11 83318652 83318852 -38525004 - B2_Mm2 SINE B2 -5 190 1 6 1220 26 30 0 0 chr11 83318961 83318994 -38524862 + AT_rich Low_complexity Low_complexity 1 33 0 6 1220 283 272 32 32 chr11 83319165 83319260 -38524596 + MIRc SINE MIR 66 160 -108 6 1220 502 198 23 0 chr11 83319681 83319767 -38524089 + B1_Mur2 SINE Alu 59 146 -3 6 1220 256 320 102 39 chr11 83320440 83320645 -38523211 + L2 LINE L2 2335 2552 -867 6 1220 1527 80 16 0 chr11 83320978 83321166 -38522690 - B2_Mm2 SINE B2 -2 193 3 6 1220 346 232 89 59 chr11 83321669 83321770 -38522086 + PB1D10 SINE Alu 6 109 -8 6 1220 722 240 134 6 chr11 83321781 83321953 -38521903 + B3A SINE B2 1 194 -4 6 1220 409 282 36 0 chr11 83321996 83322106 -38521750 - PB1D10 SINE Alu -3 114 1 6 1220 489 213 108 23 chr11 83322115 83322245 -38521611 - B1_Mur1 SINE Alu 0 149 9 6 1220 233 245 73 101 chr11 83322154 83322263 -38521593 - MT2B LTR ERVL -341 260 155 6 1220 298 297 148 35 chr11 83322297 83322412 -38521444 - MER20 DNA MER1_type -91 128 1 6 1220 3059 92 17 2 chr11 83322670 83323086 -38520770 - BGLII_Mus LTR ERVK 0 422 1 6 1220 314 161 48 0 chr11 83323729 83323791 -38520065 + B3A SINE B2 2 66 -132 6 1220 304 242 210 0 chr11 83323805 83323895 -38519961 - B1F1 SINE Alu -12 108 2 6 1220 560 202 35 35 chr11 83324132 83324245 -38519611 + RSINE1 SINE B4 4 116 -49 6 1220 1054 316 49 28 chr11 83324474 83324661 -38519195 + MTD LTR MaLR 6 191 -228 6 1220 819 35 193 50 chr11 83324661 83324780 -38519076 + B1_Mm SINE Alu 1 136 -11 6 1220 219 36 0 0 chr11 83324782 83324810 -38519046 + (G)n Simple_repeat Simple_repeat 1 28 0 6 1220 1054 316 49 28 chr11 83324810 83325010 -38518846 + MTD LTR MaLR 192 401 -18 6 1220 196 325 43 9 chr11 83326987 83327102 -38516754 - L2b LINE L2 -176 3199 3081 6 1220 237 271 36 139 chr11 83327195 83327223 -38516633 + MT2B LTR ERVL 147 265 -332 6 1220 457 173 86 9 chr11 83327223 83327328 -38516528 + B1_Mus1 SINE Alu 3 115 -33 6 1220 440 265 50 17 chr11 83327646 83327765 -38516091 - ID_B1 SINE B4 -21 203 81 6 1220 324 287 64 9 chr11 83328923 83329032 -38514824 - PB1D10 SINE Alu -2 115 1 6 1220 672 331 168 21 chr11 83329112 83329710 -38514146 + L2a LINE L2 2742 3426 0 6 1220 1038 113 17 6 chr11 83330924 83331102 -38512754 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1220 298 209 14 69 chr11 83331217 83331289 -38512567 - ID4 SINE ID -14 69 2 6 1220 588 235 68 0 chr11 83331295 83331427 -38512429 - B1F SINE Alu -8 141 1 6 1220 248 301 87 39 chr11 83332859 83333059 -38510797 + MIR SINE MIR 1 198 -70 6 1220 275 231 225 53 chr11 83333833 83334002 -38509854 - MIRc SINE MIR 0 268 71 6 1220 463 333 78 12 chr11 83334423 83334590 -38509266 + MER5B DNA MER1_type 1 178 0 6 1220 232 196 96 19 chr11 83334602 83334654 -38509202 - MER5A DNA MER1_type -6 183 128 6 1220 843 84 0 0 chr11 83334657 83334764 -38509092 + U6 snRNA snRNA 1 107 0 6 1220 416 167 28 0 chr11 83335049 83335121 -38508735 + B1_Mus2 SINE Alu 40 113 -34 6 1220 716 264 161 116 chr11 83336228 83336464 -38507392 - MTE2b LTR MaLR -8 371 100 6 1220 757 251 89 0 chr11 83336464 83336655 -38507201 + B3 SINE B2 1 208 -8 6 1220 716 264 161 116 chr11 83336655 83336773 -38507083 - MTE2b LTR MaLR -280 99 1 6 1220 647 249 168 0 chr11 83336800 83336985 -38506871 + B3 SINE B2 1 216 0 6 1220 258 299 82 0 chr11 83337058 83337192 -38506664 + L1MC4 LINE L1 7396 7540 -502 6 1220 251 272 272 0 chr11 83337246 83337338 -38506518 + PB1D10 SINE Alu 1 117 0 6 1220 442 211 72 16 chr11 83337344 83337469 -38506387 + B1F SINE Alu 2 133 -16 6 1220 372 186 0 0 chr11 83337522 83337581 -38506275 + B1_Mus2 SINE Alu 2 60 -87 6 1220 405 0 0 0 chr11 83337585 83337630 -38506226 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1220 402 21 0 0 chr11 83337634 83337681 -38506175 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1220 660 244 0 0 chr11 83337717 83337852 -38506004 + B1_Mur3 SINE Alu 2 136 -13 6 1220 266 293 120 14 chr11 83337964 83338172 -38505684 + L1MC4 LINE L1 7692 7921 -121 6 1220 1156 58 0 0 chr11 83338215 83338354 -38505502 + B1_Mus1 SINE Alu 2 140 -8 6 1220 300 336 47 16 chr11 83338364 83338491 -38505365 + L1MEg LINE L1 1891 2021 -4063 6 1220 255 135 0 0 chr11 83338495 83338533 -38505323 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1220 1248 54 0 0 chr11 83338533 83338680 -38505176 - B1_Mus2 SINE Alu 0 147 1 6 1220 255 135 0 0 chr11 83338680 83338693 -38505163 + (T)n Simple_repeat Simple_repeat 1 13 0 6 1220 231 241 34 17 chr11 83338748 83338807 -38505049 + RSINE1 SINE B4 3 62 -103 6 1220 208 328 16 0 chr11 83340180 83340244 -38503612 + MIRm SINE MIR 211 275 -1 6 1220 222 233 0 0 chr11 83340296 83340356 -38503500 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1220 659 149 123 8 chr11 83341468 83341590 -38502266 - B3 SINE B2 -4 212 77 6 1220 437 216 32 0 chr11 83341735 83341834 -38502022 - B3 SINE B2 -84 109 2 6 1220 962 124 242 0 chr11 83342288 83342466 -38501390 - URR1B DNA MER1_type -4 221 1 6 1220 318 352 91 15 chr11 83343248 83343447 -38500409 + MIRb SINE MIR 36 249 -19 6 1220 498 33 0 0 chr11 83343450 83343510 -38500346 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 6 1220 198 0 0 0 chr11 83344265 83344287 -38499569 + (CCCCCT)n Simple_repeat Simple_repeat 6 27 0 6 1220 204 40 0 0 chr11 83344700 83344725 -38499131 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 1220 849 168 0 0 chr11 83344786 83344941 -38498915 + (TG)n Simple_repeat Simple_repeat 1 155 0 6 1220 193 296 23 69 chr11 83345958 83346045 -38497811 + L3 LINE CR1 893 975 -3514 6 1220 276 354 33 8 chr11 83346064 83346217 -38497639 - MIR3 SINE MIR -98 170 13 6 1220 617 203 14 42 chr11 83346426 83346570 -38497286 - B1F2 SINE Alu -5 144 5 6 1220 224 237 68 0 chr11 83346600 83346659 -38497197 + PB1 SINE Alu 32 94 -33 6 1220 953 199 5 44 chr11 83346994 83347014 -38496842 - B3A SINE B2 0 198 182 7 1220 207 0 0 0 chr11 83347014 83347037 -38496819 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1220 981 188 11 11 chr11 83347037 83347221 -38496635 - B3 SINE B2 -32 184 2 7 1220 568 309 55 29 chr11 83347511 83347821 -38496035 - L1MA9 LINE L1 -42 6270 5953 7 1220 214 295 74 28 chr11 83347840 83347948 -38495908 + MIRm SINE MIR 41 153 -123 7 1220 184 122 49 0 chr11 83348968 83349009 -38494847 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1220 206 347 78 20 chr11 83349116 83349269 -38494587 + MIRb SINE MIR 40 201 -67 7 1220 222 301 122 22 chr11 83349898 83350037 -38493819 + MIRc SINE MIR 18 170 -98 7 1220 666 254 97 116 chr11 83350843 83350925 -38492931 - MTD LTR MaLR -14 405 332 7 1220 1389 68 15 26 chr11 83350925 83351120 -38492736 - B2_Mm1t SINE B2 0 193 1 7 1220 666 254 97 116 chr11 83351120 83351295 -38492561 - MTD LTR MaLR -88 331 153 7 1220 255 330 36 80 chr11 83351554 83351666 -38492190 + MIRc SINE MIR 123 229 -39 7 1220 325 238 93 88 chr11 83352194 83352220 -38491636 - ID_B1 SINE B4 -63 229 170 7 1220 552 175 31 0 chr11 83352220 83352317 -38491539 - B1_Mur2 SINE Alu -20 129 30 7 1220 325 238 93 88 chr11 83352317 83352360 -38491496 - ID_B1 SINE B4 -63 169 64 7 1220 764 314 70 8 chr11 83353159 83353400 -38490456 + B4 SINE B4 7 262 -30 7 1220 416 232 42 10 chr11 83353647 83353743 -38490113 + PB1D10 SINE Alu 13 111 -6 7 1220 218 100 0 0 chr11 83354291 83354321 -38489535 + MIRm SINE MIR 231 260 -16 7 1220 212 286 69 28 chr11 83354524 83354596 -38489260 - MIRb SINE MIR -71 197 123 7 1220 873 176 154 5 chr11 83355088 83355276 -38488580 + B3 SINE B2 1 216 0 7 1220 1391 191 35 4 chr11 83356229 83356487 -38487369 - Lx8 LINE L1 -381 7092 6827 7 1220 2011 117 101 6 chr11 83356491 83356819 -38487037 + ORR1B2 LTR MaLR 1 359 -8 7 1220 1720 246 102 59 chr11 83356835 83356958 -38486898 - Lx8 LINE L1 -664 6809 6691 7 1220 595 224 174 5 chr11 83356958 83357142 -38486714 - B3 SINE B2 0 216 2 7 1220 1720 246 102 59 chr11 83357142 83357575 -38486281 - Lx8 LINE L1 -783 6690 6230 7 1220 445 205 0 24 chr11 83358484 83358569 -38485287 + B3 SINE B2 102 184 -32 7 1220 487 239 34 0 chr11 83358560 83358677 -38485179 - B3A SINE B2 -77 121 1 7 1220 243 329 24 24 chr11 83358801 83358847 -38485009 - B3A SINE B2 0 198 153 7 1220 405 0 0 0 chr11 83358847 83358892 -38484964 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1220 243 329 24 24 chr11 83358892 83358929 -38484927 - B3A SINE B2 -46 152 116 7 1220 378 0 0 0 chr11 83358965 83359007 -38484849 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 7 1220 577 244 0 36 chr11 83359007 83359147 -38484709 - B1_Mus2 SINE Alu -12 135 1 7 1220 333 278 145 53 chr11 83359241 83359393 -38484463 + MTEa LTR MaLR 4 169 -210 7 1220 305 310 38 15 chr11 83359477 83359608 -38484248 - B4 SINE B4 -157 135 2 7 1220 555 305 48 99 chr11 83359725 83359998 -38483858 - MTEb LTR MaLR -38 341 83 7 1220 330 45 0 0 chr11 83359999 83360043 -38483813 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1220 846 68 0 0 chr11 83360043 83360161 -38483695 + (GA)n Simple_repeat Simple_repeat 1 118 0 7 1220 1171 62 0 0 chr11 83360486 83360632 -38483224 + B1_Mus2 SINE Alu 2 147 0 7 1220 180 0 0 0 chr11 83360632 83360652 -38483204 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1220 275 350 49 54 chr11 83360660 83360844 -38483012 - MIR SINE MIR -13 249 67 7 1220 705 50 50 0 chr11 83361102 83361221 -38482635 + (GA)n Simple_repeat Simple_repeat 1 125 0 7 1220 236 186 0 0 chr11 83361286 83361329 -38482527 - ID_B1 SINE B4 0 224 182 7 1220 236 276 46 37 chr11 83361360 83361391 -38482465 + MER34A LTR ERV1 13 43 -528 7 1220 504 0 0 0 chr11 83361391 83361447 -38482409 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1220 236 276 46 37 chr11 83361447 83361524 -38482332 + MER34A LTR ERV1 44 121 -450 7 1221 485 207 12 8 chr11 83361803 83361936 -38481920 - B3 SINE B2 0 216 1 7 1221 1215 230 47 71 chr11 83362002 83362213 -38481643 + MTD LTR MaLR 1 211 -208 7 1221 694 169 209 28 chr11 83362213 83362395 -38481461 + B3 SINE B2 2 216 0 7 1221 1215 240 58 88 chr11 83362395 83362587 -38481269 + MTD LTR MaLR 165 356 -23 7 1221 235 304 38 12 chr11 83362670 83362750 -38481106 - MER34A LTR ERV1 -479 92 11 7 1221 696 244 0 15 chr11 83363557 83363694 -38480162 - RSINE1 SINE B4 -26 139 5 7 1221 593 306 112 67 chr11 83363775 83364170 -38479686 - L1MEa LINE L1 -5535 665 267 7 1221 1676 241 10 30 chr11 83364295 83364689 -38479167 + Lx6 LINE L1 7035 7420 -40 7 1221 594 0 0 0 chr11 83364699 83364765 -38479091 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1221 1216 36 0 0 chr11 83364786 83364925 -38478931 + B1_Mm SINE Alu 1 139 -8 7 1221 1888 116 26 94 chr11 83364971 83365322 -38478534 - ORR1A4 LTR MaLR -2 327 1 7 1221 1595 127 4 7 chr11 83365331 83365601 -38478255 + RLTR28 LTR ERVL 256 524 0 7 1221 2254 42 0 47 chr11 83365626 83365924 -38477932 - RLTR10B LTR ERVK 0 292 9 7 1221 333 48 0 0 chr11 83365960 83366002 -38477854 - RLTR10B LTR ERVK -250 42 1 7 1221 730 219 66 17 chr11 83366002 83366183 -38477673 - Lx7 LINE L1 -817 6879 6690 7 1221 1009 284 61 36 chr11 83366187 83366549 -38477307 - Lx7 LINE L1 -1220 6476 6106 7 1221 9470 76 4 11 chr11 83366617 83368451 -38475405 - L1_Mus1 LINE L1 -1 6566 4737 7 1221 219 36 0 0 chr11 83368451 83368479 -38475377 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1221 9470 84 4 22 chr11 83368479 83368624 -38475232 - L1_Mus1 LINE L1 -1147 4736 4610 7 1221 22 35 0 0 chr11 83368629 83368658 -38475198 + AT_rich Low_complexity Low_complexity 1 29 0 7 1221 990 141 0 3 chr11 83368671 83369372 -38474484 + (CA)n Simple_repeat Simple_repeat 1 699 0 7 1221 324 104 0 20 chr11 83369375 83369414 -38474442 + HAL1-3A_ME LINE L1 1976 2014 -844 7 1221 1032 111 0 0 chr11 83369414 83369594 -38474262 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1221 555 243 35 14 chr11 83370364 83370506 -38473350 + MER105 DNA DNA 44 188 -16 7 1221 249 233 167 62 chr11 83370859 83370955 -38472901 + PB1D10 SINE Alu 11 116 -1 7 1221 233 347 139 18 chr11 83370958 83371290 -38472566 + L2 LINE L2 1806 2177 -1242 7 1221 313 314 206 13 chr11 83371608 83371918 -38471938 + L2 LINE L2 2680 3049 -370 7 1221 1330 105 21 0 chr11 83373331 83373522 -38470334 + B2_Mm2 SINE B2 1 195 0 7 1221 974 155 11 28 chr11 83373701 83373880 -38469976 + B2_Mm2 SINE B2 2 177 -18 7 1221 1225 208 95 29 chr11 83373989 83374335 -38469521 + ORR1D2 LTR MaLR 1 369 -1 7 1221 1160 196 150 66 chr11 83374429 83374763 -38469093 - MTE2a LTR MaLR 0 379 18 7 1221 425 298 182 19 chr11 83374818 83375027 -38468829 - MIRb SINE MIR 0 268 26 7 1221 823 237 90 10 chr11 83375039 83375239 -38468617 - B3 SINE B2 0 216 1 7 1221 992 262 58 12 chr11 83376525 83376854 -38467002 + L1MB4 LINE L1 5762 6105 -75 7 1221 1445 81 5 0 chr11 83376881 83377066 -38466790 + B2_Mm2 SINE B2 2 187 -8 7 1221 277 122 0 0 chr11 83378071 83378112 -38465744 + B3A SINE B2 1 41 -157 7 1221 1195 55 0 0 chr11 83378113 83378258 -38465598 + B1_Mus2 SINE Alu 3 147 0 7 1221 549 258 23 39 chr11 83378292 83378462 -38465394 + B3 SINE B2 33 195 0 7 1221 562 277 149 17 chr11 83378697 83378932 -38464924 + B4A SINE B4 12 277 -15 7 1221 475 279 14 22 chr11 83378962 83379101 -38464755 + B1F1 SINE Alu 1 138 -11 7 1221 294 147 0 0 chr11 83379118 83379186 -38464670 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 7 1221 6271 51 4 1 chr11 83379403 83380172 -38463684 + L1Md_F2 LINE L1 5812 6582 0 7 1221 3724 147 83 3 chr11 83380483 83381124 -38462732 - RLTR17 LTR ERVK 0 692 1 7 1221 1191 118 20 159 chr11 83381854 83382055 -38461801 + URR1B DNA MER1_type 10 184 -41 7 1221 1054 60 75 0 chr11 83382055 83382189 -38461667 - B1_Mm SINE Alu -3 144 1 7 1221 1191 118 20 159 chr11 83382189 83382238 -38461618 + URR1B DNA MER1_type 185 225 0 7 1221 234 229 0 20 chr11 83382196 83382245 -38461611 - CYRA11_Mm Unknown Y-chromosome -405 212 165 7 1221 225 94 0 0 chr11 83383161 83383193 -38460663 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1221 338 207 0 0 chr11 83383194 83383252 -38460604 - B3A SINE B2 -16 182 125 7 1221 258 331 67 8 chr11 83383586 83383720 -38460136 - L2 LINE L2 -2997 422 281 7 1221 513 92 31 0 chr11 83384306 83384404 -38459452 + (TG)n Simple_repeat Simple_repeat 2 102 0 7 1221 211 238 0 0 chr11 83384418 83384460 -38459396 - ID SINE ID -148 76 35 7 1221 1398 106 68 34 chr11 83384597 83384799 -38459057 - MT2B LTR ERVL 0 601 392 7 1221 1410 54 43 5 chr11 83384799 83384986 -38458870 + B2_Mm2 SINE B2 2 195 0 7 1221 2653 121 2 50 chr11 83384981 83385399 -38458457 - MT2B LTR ERVL -201 400 3 7 1221 295 26 0 0 chr11 83385401 83385439 -38458417 - MERVL-int LTR ERVL 0 5485 5448 7 1221 392 269 95 22 chr11 83385440 83385577 -38458279 - ORR1A3-int LTR MaLR -1324 639 493 7 1221 251 238 111 0 chr11 83385620 83385683 -38458173 - MERVL-int LTR ERVL -274 5487 5418 7 1221 963 157 48 146 chr11 83386304 83386661 -38457195 - RLTRETN_Mm LTR ERVK 0 322 1 7 1221 3186 246 59 20 chr11 83386702 83387684 -38456172 + L1_Mur3 LINE L1 3769 4788 -1092 7 1221 1224 34 7 0 chr11 83387820 83387966 -38455890 + B1_Mus1 SINE Alu 2 148 0 7 1221 709 187 30 7 chr11 83388487 83388622 -38455234 - B3 SINE B2 -77 139 2 7 1221 547 309 102 30 chr11 83390901 83391265 -38452591 + MER74B LTR ERVL 217 606 -16 7 1221 1263 157 9 5 chr11 83391550 83391761 -38452095 - URR1B DNA MER1_type -13 212 1 7 1221 958 177 129 0 chr11 83392443 83392629 -38451227 - B3 SINE B2 -6 210 1 7 1221 324 239 20 11 chr11 83392704 83392802 -38451054 + B1_Mus1 SINE Alu 2 99 -49 7 1221 348 203 0 0 chr11 83392882 83392946 -38450910 + B3A SINE B2 2 65 -133 7 1221 716 299 102 53 chr11 83392960 83393618 -38450238 - L1_Rod LINE L1 -3916 1931 1242 7 1221 1394 45 6 0 chr11 83393638 83393816 -38450040 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 7 1221 1310 91 11 6 chr11 83393818 83393995 -38449861 - B2_Mm2 SINE B2 -16 179 2 7 1221 1072 88 0 0 chr11 83394115 83394252 -38449604 + B1_Mus1 SINE Alu 2 138 -10 8 1221 220 53 26 26 chr11 83394252 83394291 -38449565 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1221 796 234 127 84 chr11 83394644 83394976 -38448880 + MTE2a LTR MaLR 1 346 -33 8 1221 3154 162 31 30 chr11 83395543 83396149 -38447707 - RMER20B LTR ERVK -20 607 1 8 1221 1031 215 57 0 chr11 83396151 83396360 -38447496 - MERVK26-int LTR ERVK -1 6918 6698 8 1221 1744 99 110 26 chr11 83396360 83396670 -38447186 + RLTR23 LTR ERV1 10 345 -85 8 1221 585 138 11 0 chr11 83397182 83397276 -38446580 + RLTR23 LTR ERV1 336 430 0 8 1221 2498 217 32 2 chr11 83397278 83397782 -38446074 - MERVK26-int LTR ERVK -214 6705 6187 8 1221 2729 235 16 3 chr11 83397804 83398368 -38445488 - MERVK26-int LTR ERVK -818 6101 5531 8 1221 1248 48 0 0 chr11 83398657 83398804 -38445052 + B1_Mus2 SINE Alu 1 147 0 8 1221 230 83 0 59 chr11 83398804 83398855 -38445001 + (A)n Simple_repeat Simple_repeat 1 48 0 8 1221 1491 251 42 72 chr11 83399930 83400175 -38443681 - MERVK26-int LTR ERVK -6374 545 317 8 1221 4486 58 24 35 chr11 83400175 83400769 -38443087 - LTRIS_Mus LTR ERV1 0 587 1 8 1221 1491 251 42 72 chr11 83400769 83401026 -38442830 - MERVK26-int LTR ERVK -6603 316 58 8 1221 3002 147 36 56 chr11 83401133 83401718 -38442138 - RMER20B LTR ERVK -12 615 43 8 1221 186 189 0 0 chr11 83402959 83402996 -38440860 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1221 227 280 86 0 chr11 83403408 83403501 -38440355 - PB1D10 SINE Alu -16 101 1 8 1221 414 0 0 0 chr11 83403936 83403982 -38439874 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1221 222 118 0 0 chr11 83403982 83404015 -38439841 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1221 422 333 36 0 chr11 83404081 83404249 -38439607 - L1MB3 LINE L1 -52 6131 5958 8 1221 397 258 59 5 chr11 83404258 83404368 -38439488 - PB1D10 SINE Alu 0 117 5 8 1221 387 346 64 25 chr11 83404370 83404696 -38439160 - L1MB3 LINE L1 -221 5962 5624 8 1221 299 277 12 24 chr11 83404817 83404902 -38438954 + CT-rich Low_complexity Low_complexity 4 87 0 8 1221 853 229 17 22 chr11 83404966 83405145 -38438711 + B3A SINE B2 3 180 -18 8 1221 367 230 209 48 chr11 83405371 83405558 -38438298 + MER2 DNA MER2_type 99 315 -30 8 1221 648 291 0 6 chr11 83407462 83407628 -38436228 + B3A SINE B2 2 166 -32 8 1221 423 101 38 0 chr11 83407653 83407732 -38436124 + (CA)n Simple_repeat Simple_repeat 1 82 0 8 1221 1473 38 5 27 chr11 83410198 83410385 -38433471 + B2_Mm1a SINE B2 2 184 -9 8 1221 3109 90 5 9 chr11 83411010 83411435 -38432421 - L1_Mus3 LINE L1 -17 6621 6199 8 1221 260 300 60 36 chr11 83412107 83412273 -38431583 + LTRIS3 LTR ERV1 290 459 -53 8 1221 835 156 7 0 chr11 83412294 83412429 -38431427 - URR1B DNA MER1_type -88 137 2 8 1221 4014 125 112 12 chr11 83412497 83413184 -38430672 - RMER6A LTR ERVK 0 756 1 8 1221 591 247 83 12 chr11 83413675 83413843 -38430013 - B3A SINE B2 -14 184 5 8 1221 357 268 43 59 chr11 83414445 83414694 -38429162 - Lx7 LINE L1 -11 7685 7313 8 1221 184 320 51 10 chr11 83415092 83415190 -38428666 + L2 LINE L2 2561 2662 -757 8 1221 626 261 42 12 chr11 83415294 83415461 -38428395 + B3A SINE B2 1 172 -44 8 1221 410 299 103 5 chr11 83415624 83415809 -38428047 + L2 LINE L2 2656 2858 -561 8 1221 817 140 251 23 chr11 83415838 83416013 -38427843 + B3 SINE B2 2 216 0 8 1221 334 284 0 24 chr11 83416501 83416584 -38427272 - PB1D10 SINE Alu -36 81 1 8 1221 448 261 68 27 chr11 83416686 83416832 -38427024 + B3A SINE B2 1 152 -46 8 1221 459 0 0 0 chr11 83416833 83416884 -38426972 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1221 741 117 0 0 chr11 83416884 83417021 -38426835 + (GA)n Simple_repeat Simple_repeat 1 137 0 8 1221 28 0 0 0 chr11 83417021 83417049 -38426807 + AT_rich Low_complexity Low_complexity 1 28 0 8 1221 386 345 91 6 chr11 83417056 83417231 -38426625 + MLT1G LTR MaLR 17 206 -385 8 1221 261 333 60 53 chr11 83417246 83417366 -38426490 + MLT1G LTR MaLR 258 378 -213 8 1221 567 249 51 47 chr11 83417366 83417619 -38426237 + MER33 DNA MER1_type 1 254 -70 8 1221 924 234 25 0 chr11 83417644 83417841 -38426015 + ID_B1 SINE B4 10 211 -13 8 1221 389 265 74 22 chr11 83417720 83417842 -38426014 + B1_Mm SINE Alu 6 135 -12 8 1221 450 0 0 0 chr11 83417842 83417892 -38425964 + (CAAAC)n Simple_repeat Simple_repeat 3 52 0 8 1221 389 265 74 22 chr11 83417892 83417904 -38425952 + B1_Mm SINE Alu 136 147 0 8 1221 229 269 0 15 chr11 83417897 83417965 -38425891 + MER33 DNA MER1_type 258 324 0 8 1221 433 353 42 10 chr11 83417966 83418158 -38425698 + MLT1G LTR MaLR 376 573 -18 8 1221 394 399 22 0 chr11 83418181 83418319 -38425537 - LTR16E2 LTR ERVL -312 256 116 8 1221 358 283 37 56 chr11 83418951 83419112 -38424744 + RMER15 LTR ERVL 347 504 -71 8 1221 818 170 0 39 chr11 83419450 83419603 -38424253 + B1_Mur3 SINE Alu 1 147 -2 8 1221 776 267 5 30 chr11 83419618 83419819 -38424037 - B3 SINE B2 -19 197 2 8 1221 304 278 29 20 chr11 83421931 83422042 -38421814 + MLT1F2 LTR MaLR 366 557 -3 8 1221 286 96 40 27 chr11 83422274 83422349 -38421507 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1221 277 242 50 40 chr11 83423217 83423316 -38420540 + MER45A DNA Tip100 59 158 -20 8 1221 1842 139 104 10 chr11 83423364 83423827 -38420029 - RMER19A LTR ERVK 0 737 139 8 1221 3526 13 8 0 chr11 83423827 83424220 -38419636 - MTA_Mm LTR MaLR 0 396 1 8 1221 1842 160 172 14 chr11 83424220 83424332 -38419524 - RMER19A LTR ERVK -599 138 1 8 1221 22 35 0 0 chr11 83424959 83424988 -38418868 + AT_rich Low_complexity Low_complexity 1 29 0 8 1221 40 0 0 0 chr11 83425019 83425059 -38418797 + AT_rich Low_complexity Low_complexity 1 40 0 8 1221 233 281 16 55 chr11 83425073 83425201 -38418655 - MER96B DNA hAT -123 294 172 8 1221 896 114 23 0 chr11 83425216 83425392 -38418464 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 8 1221 185 400 0 0 chr11 83426836 83426926 -38416930 + L2b LINE L2 2976 3065 -310 8 1221 1408 55 49 0 chr11 83428316 83428499 -38415357 + B2_Mm1t SINE B2 1 192 -1 8 1221 556 321 189 15 chr11 83428644 83429099 -38414757 + MER34 LTR ERV1 1 534 -8 8 1221 295 237 28 50 chr11 83429398 83429615 -38414241 + (TTATA)n Simple_repeat Simple_repeat 1 212 0 8 1221 45 45 0 0 chr11 83429857 83429923 -38413933 + AT_rich Low_complexity Low_complexity 1 66 0 8 1221 23 0 0 0 chr11 83430583 83430606 -38413250 + AT_rich Low_complexity Low_complexity 1 23 0 8 1221 493 107 31 62 chr11 83431124 83431284 -38412572 + (TCTCTG)n Simple_repeat Simple_repeat 3 157 0 8 1221 723 241 26 131 chr11 83431649 83431993 -38411863 - L1M4 LINE L1 -1195 4951 4644 8 1221 337 236 192 22 chr11 83432434 83432616 -38411240 - L1M4 LINE L1 -1513 4633 4421 8 1221 478 222 86 57 chr11 83432814 83433024 -38410832 - L1M4 LINE L1 -1706 4440 4225 8 1221 3925 48 2 6 chr11 83433070 83433557 -38410299 - L1Md_F2 LINE L1 -1 6581 6097 8 1221 202 210 48 16 chr11 83434301 83434364 -38409492 - MIR SINE MIR -46 216 152 8 1221 224 354 30 15 chr11 83434487 83434619 -38409237 + MIRb SINE MIR 111 244 -24 8 1221 273 264 135 8 chr11 83435071 83435197 -38408659 - Lx6 LINE L1 -8 7452 7311 8 1221 3676 187 12 0 chr11 83435262 83435865 -38407991 - Lx7 LINE L1 -546 7150 6541 8 1221 1220 175 5 5 chr11 83435875 83436087 -38407769 - L1_Mur3 LINE L1 -1784 4096 3885 8 1221 475 331 7 0 chr11 83436467 83436603 -38407253 - MER2 DNA MER2_type 0 345 209 8 1221 2157 98 22 12 chr11 83436610 83436930 -38406926 - L1Md_F2 LINE L1 -4 6578 6256 8 1221 424 257 25 42 chr11 83436930 83437048 -38406808 - PB1D10 SINE Alu 0 117 2 8 1221 465 246 14 0 chr11 83437050 83437188 -38406668 - MER2 DNA MER2_type -119 226 87 8 1221 325 292 60 169 chr11 83437632 83437933 -38405923 - B4A SINE B4 -22 270 3 8 1221 201 147 0 0 chr11 83437952 83437986 -38405870 + (GGA)n Simple_repeat Simple_repeat 2 35 0 8 1221 25 31 0 0 chr11 83438140 83438172 -38405684 + AT_rich Low_complexity Low_complexity 1 32 0 8 1221 615 332 23 0 chr11 83438400 83438617 -38405239 + ID_B1 SINE B4 3 224 0 8 1221 507 177 0 0 chr11 83438617 83438713 -38405143 + GA-rich Low_complexity Low_complexity 1 96 0 8 1221 1224 101 0 0 chr11 83438713 83438891 -38404965 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 8 1221 308 270 52 35 chr11 83438891 83439006 -38404850 - L1MEf LINE L1 -4517 1683 1567 8 1221 447 193 184 0 chr11 83439032 83439146 -38404710 + B3 SINE B2 5 139 -77 8 1221 267 54 0 0 chr11 83439173 83439210 -38404646 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1221 562 151 11 0 chr11 83439980 83440073 -38403783 - B3 SINE B2 -1 215 122 8 1221 440 340 91 34 chr11 83440357 83440707 -38403149 + MLT2B4 LTR ERVL 5 363 -51 8 1221 441 0 0 0 chr11 83441113 83441162 -38402694 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1221 258 246 28 84 chr11 83441167 83441200 -38402656 - ID_B1 SINE B4 -65 159 132 8 1221 1955 89 8 160 chr11 83441200 83441588 -38402268 + ORR1A4 LTR MaLR 1 329 0 8 1221 258 246 28 84 chr11 83441588 83441625 -38402231 - ID_B1 SINE B4 -93 131 93 8 1221 1078 139 114 43 chr11 83441881 83442091 -38401765 + URR1A DNA MER1_type 1 225 -1 8 1221 428 175 0 102 chr11 83442700 83442808 -38401048 + PB1D10 SINE Alu 21 117 0 8 1221 287 175 50 20 chr11 83442973 83443072 -38400784 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 8 1221 540 218 0 0 chr11 83443072 83443182 -38400674 - B1F SINE Alu -35 114 5 8 1221 29 70 0 0 chr11 83445301 83445358 -38398498 + AT_rich Low_complexity Low_complexity 1 57 0 8 1221 1227 135 125 0 chr11 83445372 83445572 -38398284 + URR1B DNA MER1_type 1 225 0 8 1221 234 281 113 24 chr11 83445876 83446000 -38397856 + MER53 DNA hAT 58 192 -1 8 1221 232 354 95 0 chr11 83446091 83446238 -38397618 - MER5B DNA MER1_type -15 163 3 8 1221 340 248 70 17 chr11 83446552 83446667 -38397189 + MLT2B2 LTR ERVL 1 121 -394 8 1221 372 324 9 37 chr11 83446669 83446778 -38397078 + RSINE1 SINE B4 50 155 -10 8 1221 262 312 13 92 chr11 83447075 83447227 -38396629 - MER5A1 DNA MER1_type -7 159 20 8 1221 570 252 22 15 chr11 83447791 83447928 -38395928 + MTE2b LTR MaLR 1 138 -241 8 1221 296 309 33 49 chr11 83447927 83448074 -38395782 + MTE2b LTR MaLR 93 228 -151 8 1221 372 22 0 0 chr11 83448082 83448127 -38395729 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1221 309 186 0 0 chr11 83448166 83448225 -38395631 + MTE2b LTR MaLR 314 372 -7 8 1221 956 99 0 53 chr11 83448508 83448679 -38395177 - B2_Mm2 SINE B2 -1 194 33 8 1221 240 70 233 0 chr11 83448682 83448725 -38395131 + B1_Mur3 SINE Alu 88 140 -9 8 1221 525 32 0 0 chr11 83448910 83448973 -38394883 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 8 1221 432 245 29 10 chr11 83449758 83449861 -38393995 - PB1D10 SINE Alu 0 117 13 9 1221 474 162 389 123 chr11 83449954 83450116 -38393740 + B3 SINE B2 3 207 -9 9 1221 411 339 48 0 chr11 83450628 83450752 -38393104 + ID_B1 SINE B4 78 207 -17 9 1221 859 295 101 21 chr11 83451146 83451631 -38392225 + L1MA4A LINE L1 5255 5778 -525 9 1221 381 176 0 0 chr11 83451631 83451705 -38392151 + (TAA)n Simple_repeat Simple_repeat 3 76 0 9 1221 891 139 35 0 chr11 83451707 83451851 -38392005 + B1_Mur3 SINE Alu 1 149 0 9 1221 424 287 98 43 chr11 83451945 83452222 -38391634 + L1MA4A LINE L1 5781 6072 -228 9 1221 22 70 0 0 chr11 83452244 83452287 -38391569 + AT_rich Low_complexity Low_complexity 1 43 0 9 1221 477 0 0 0 chr11 83454657 83454710 -38389146 + (TTA)n Simple_repeat Simple_repeat 2 54 0 9 1221 180 0 0 0 chr11 83455375 83455395 -38388461 + (CAA)n Simple_repeat Simple_repeat 1 20 0 9 1221 724 168 130 47 chr11 83455745 83455914 -38387942 + RMER17C-int LTR ERVK 291 473 -2765 9 1221 691 186 40 85 chr11 83455912 83456112 -38387744 + RMER17C-int LTR ERVK 417 607 -2631 9 1221 245 322 206 0 chr11 83456179 83456325 -38387531 + MER5A DNA MER1_type 3 178 -11 9 1221 191 114 0 28 chr11 83456439 83456475 -38387381 + (GAA)n Simple_repeat Simple_repeat 2 36 0 9 1221 1070 62 19 6 chr11 83456476 83456637 -38387219 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 9 1221 706 232 56 66 chr11 83456657 83457111 -38386745 - RMER17C LTR ERVK -25 385 1 9 1221 4261 116 67 39 chr11 83457111 83457453 -38386403 - RMER17C-int LTR ERVK 0 3238 2871 9 1221 441 0 0 0 chr11 83457453 83457502 -38386354 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1221 4261 116 67 39 chr11 83457502 83457880 -38385976 - RMER17C-int LTR ERVK -368 2870 2499 9 1221 431 213 23 69 chr11 83457986 83458117 -38385739 - RLTR23 LTR ERV1 0 430 306 9 1221 1260 185 7 37 chr11 83458149 83458447 -38385409 + RLTR22_Mur LTR ERVK 415 703 -1145 9 1221 368 218 39 10 chr11 83459140 83459242 -38384614 + RLTR22_Mur LTR ERVK 705 809 -1039 9 1221 335 55 82 0 chr11 83459364 83459437 -38384419 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 9 1221 240 188 87 0 chr11 83459438 83459507 -38384349 + RLTR22_Mur LTR ERVK 1633 1707 -141 9 1221 238 239 10 129 chr11 83460529 83460630 -38383226 - MTEa LTR MaLR -48 331 243 9 1221 308 324 9 9 chr11 83460729 83460838 -38383018 - MLT1A1 LTR MaLR -281 127 19 9 1221 580 195 17 17 chr11 83460839 83460954 -38382902 + PB1D9 SINE Alu 6 120 0 9 1221 221 0 0 33 chr11 83461303 83461333 -38382523 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1221 212 190 52 0 chr11 83461544 83461602 -38382254 + (TTAAA)n Simple_repeat Simple_repeat 2 62 0 9 1221 23 0 0 0 chr11 83463611 83463634 -38380222 + AT_rich Low_complexity Low_complexity 1 23 0 9 1221 24 77 0 0 chr11 83463820 83463872 -38379984 + AT_rich Low_complexity Low_complexity 1 52 0 9 1221 387 266 128 0 chr11 83464056 83464150 -38379706 - PB1D10 SINE Alu -8 109 4 9 1221 477 76 0 0 chr11 83464162 83464228 -38379628 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1221 351 358 30 21 chr11 83464245 83464423 -38379433 - B4A SINE B4 0 292 102 9 1221 3376 159 77 93 chr11 83464423 83465243 -38378613 + RLTR40 LTR ERVK 1 807 -10 9 1221 261 250 125 0 chr11 83465268 83465348 -38378508 - B4A SINE B4 -201 91 2 9 1221 380 19 0 37 chr11 83465420 83465474 -38378382 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 9 1221 2196 203 71 67 chr11 83465664 83466323 -38377533 + Lx9 LINE L1 6983 7644 0 9 1221 258 236 18 0 chr11 83466658 83466713 -38377143 - RSINE1 SINE B4 0 165 110 9 1221 529 299 138 11 chr11 83467534 83467723 -38376133 + B3 SINE B2 1 213 -3 9 1221 897 150 0 45 chr11 83467750 83467904 -38375952 + B1_Mur4 SINE Alu 3 149 -1 9 1221 733 253 39 0 chr11 83468068 83468250 -38375606 + RLTR18B LTR ERVK 5 193 -319 9 1221 260 203 31 15 chr11 83468247 83468312 -38375544 + RLTR18B LTR ERVK 111 176 -336 9 1221 870 275 158 18 chr11 83468325 83468655 -38375201 + RLTR18B LTR ERVK 111 486 -26 9 1221 241 299 60 26 chr11 83468669 83468763 -38375093 - Lx8 LINE L1 -45 7428 7330 9 1221 432 55 0 0 chr11 83468763 83468818 -38375038 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1221 241 299 60 26 chr11 83468818 83468874 -38374982 - Lx8 LINE L1 -144 7329 7274 9 1221 601 159 9 17 chr11 83469047 83469162 -38374694 + ID_B1 SINE B4 109 222 -2 9 1221 1587 131 72 7 chr11 83469629 83469905 -38373951 - Lx LINE L1 0 6654 6361 9 1221 238 236 36 18 chr11 83470189 83470245 -38373611 + L2b LINE L2 3285 3341 -34 9 1221 480 293 77 24 chr11 83471201 83471369 -38372487 + B3A SINE B2 4 180 -18 9 1221 696 198 48 75 chr11 83471895 83472081 -38371775 - B2_Mm2 SINE B2 -14 181 1 9 1221 314 224 178 0 chr11 83472082 83472189 -38371667 - RCHARR1 DNA MER1_type -159 815 690 9 1221 366 304 91 15 chr11 83472517 83472714 -38371142 + MIR SINE MIR 30 241 -21 9 1221 26 0 0 0 chr11 83472766 83472792 -38371064 + AT_rich Low_complexity Low_complexity 1 26 0 9 1221 551 232 122 0 chr11 83472805 83472986 -38370870 - L1MA6 LINE L1 -25 6275 6073 9 1221 1299 92 43 11 chr11 83476613 83476787 -38367069 + B2_Mm2 SINE B2 2 181 -14 9 1221 183 80 0 0 chr11 83476787 83476812 -38367044 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 9 1221 1299 92 43 11 chr11 83476812 83476824 -38367032 + B2_Mm2 SINE B2 182 193 -2 9 1221 1919 91 15 8 chr11 83478308 83478574 -38365282 + L1_Mus1 LINE L1 6298 6565 -2 9 1221 30 27 0 0 chr11 83478575 83478612 -38365244 + AT_rich Low_complexity Low_complexity 1 37 0 9 1221 2274 145 10 25 chr11 83478667 83479063 -38364793 - Lx2B LINE L1 -2 6998 6609 9 1221 195 324 99 27 chr11 83479504 83479615 -38364241 - MIR3 SINE MIR -3 205 87 9 1221 336 282 147 54 chr11 83479950 83480134 -38363722 - MER3 DNA MER1_type -6 203 3 9 1221 526 286 72 86 chr11 83480275 83480340 -38363516 + MLT1D LTR MaLR 12 79 -426 9 1221 2099 126 6 61 chr11 83480340 83480686 -38363170 - ORR1A4 LTR MaLR 0 329 3 9 1221 526 286 72 86 chr11 83480686 83480902 -38362954 + MLT1D LTR MaLR 80 289 -216 9 1221 638 280 11 33 chr11 83480902 83481083 -38362773 + B3 SINE B2 2 178 -38 9 1221 969 34 0 0 chr11 83481100 83481217 -38362639 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 9 1221 555 237 195 0 chr11 83481222 83481391 -38362465 + MLT1D LTR MaLR 304 505 0 9 1221 582 245 19 67 chr11 83482119 83482329 -38361527 - L1M2 LINE L1 -599 5772 5573 9 1221 231 103 0 0 chr11 83482360 83482399 -38361457 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1221 2317 279 77 59 chr11 83482405 83484412 -38359444 - L1M2 LINE L1 -1843 4365 2241 9 1221 602 226 15 0 chr11 83486643 83486780 -38357076 + B1_Mus2 SINE Alu 9 147 0 9 1221 479 227 80 1 chr11 83489629 83489758 -38354098 + B1_Mus1 SINE Alu 9 148 -1 9 1221 476 209 6 0 chr11 83490093 83490265 -38353591 + CT-rich Low_complexity Low_complexity 1 173 0 9 1221 512 184 55 23 chr11 83491871 83491999 -38351857 - ORR1D1 LTR MaLR -3 371 240 9 152 2723 215 113 95 chr11 83492496 83492886 -38350970 + RMER17B LTR ERVK 1 424 -534 9 1222 491 0 17 0 chr11 83492886 83492945 -38350911 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 9 1222 2723 215 113 95 chr11 83492945 83493495 -38350361 + RMER17B LTR ERVK 425 958 0 9 1222 515 322 40 6 chr11 83494251 83494426 -38349430 + B3A SINE B2 3 183 -15 9 1222 1958 48 0 0 chr11 83495171 83495402 -38348454 - L1_Mus2 LINE L1 -175 6391 6161 9 1222 373 242 42 54 chr11 83495769 83495935 -38347921 - RLTR43A LTR ERVK 0 364 201 9 1222 207 0 0 0 chr11 83496728 83496751 -38347105 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 1222 3218 56 2 2 chr11 83496838 83497234 -38346622 - MTA_Mm LTR MaLR 0 396 1 9 1222 547 260 26 40 chr11 83497360 83497512 -38346344 - B1_Mur4 SINE Alu 0 150 1 9 1222 198 0 0 0 chr11 83497564 83497586 -38346270 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 1222 521 307 42 6 chr11 83498496 83498663 -38345193 - B3A SINE B2 -23 175 3 9 1222 468 35 0 0 chr11 83499071 83499129 -38344727 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1222 3194 34 0 0 chr11 83499269 83499681 -38344175 - MTA_Mm-int LTR MaLR -686 412 1 9 1222 2162 53 6 47 chr11 83499681 83500000 -38343856 - MTA_Mm LTR MaLR -24 372 67 9 1222 506 45 0 0 chr11 83500000 83500066 -38343790 - MTA_Mm LTR MaLR -330 66 1 1 1222 475 214 42 8 chr11 83500247 83500365 -38343491 + ORR1D1 LTR MaLR 245 366 -8 2 1222 481 135 0 2 chr11 83500894 83500991 -38342865 + MusHAL1 LINE L1 1050 1124 -2794 3 1222 1339 237 39 27 chr11 83501963 83502338 -38341518 - ORR1D1 LTR MaLR 0 379 1 4 1222 449 253 6 47 chr11 83502715 83502885 -38340971 - RNLTR23 LTR ERVK 0 642 480 5 1222 429 272 8 16 chr11 83504148 83504275 -38339581 + B3A SINE B2 1 126 -72 6 1222 3167 198 81 65 chr11 83505209 83506097 -38337759 - RMER19B LTR ERVK 0 902 1 7 1222 228 86 0 0 chr11 83506169 83506204 -38337652 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1222 429 239 73 9 chr11 83506900 83507010 -38336846 + B3A SINE B2 10 126 -72 9 1222 22 35 0 0 chr11 83507063 83507092 -38336764 + AT_rich Low_complexity Low_complexity 1 29 0 1 1222 660 194 79 0 chr11 83507508 83507647 -38336209 + B1_Mur4 SINE Alu 1 150 0 1 1222 483 33 0 0 chr11 83507841 83507902 -38335954 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1222 475 132 11 11 chr11 83509011 83509103 -38334753 + GA-rich Low_complexity Low_complexity 6 97 0 1 1222 1221 256 31 22 chr11 83509709 83510068 -38333788 - ORR1D1 LTR MaLR -8 366 5 1 1222 934 169 0 0 chr11 83511064 83511212 -38332644 - B1_Mus1 SINE Alu 0 148 1 1 1222 388 288 8 16 chr11 83511635 83511762 -38332094 + B3A SINE B2 1 126 -72 1 1222 596 254 7 0 chr11 83512770 83512908 -38330948 + B1_Mus1 SINE Alu 9 147 -1 1 1222 372 200 0 0 chr11 83513226 83513326 -38330530 + CT-rich Low_complexity Low_complexity 1 100 0 1 1222 489 197 49 0 chr11 83514954 83515076 -38328780 - ORR1D1 LTR MaLR -2 372 245 1 1222 752 211 0 7 chr11 83516356 83516504 -38327352 + B1_Mus1 SINE Alu 1 147 -1 2 1222 35 63 0 0 chr11 83516546 83516609 -38327247 + AT_rich Low_complexity Low_complexity 1 63 0 2 1222 1159 266 36 28 chr11 83518463 83518826 -38325030 - ORR1D1 LTR MaLR -8 366 1 2 1222 446 279 51 23 chr11 83520190 83520366 -38323490 + B3A SINE B2 1 181 -17 2 1222 401 0 20 0 chr11 83521148 83521197 -38322659 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1222 663 211 20 0 chr11 83521352 83521499 -38322357 + B1_Mur4 SINE Alu 1 150 0 2 1222 215 125 34 51 chr11 83521499 83521558 -38322298 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 2 1222 248 113 38 0 chr11 83522857 83522910 -38320946 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 1222 1297 259 30 22 chr11 83523520 83523883 -38319973 - ORR1D1 LTR MaLR -8 366 1 2 1222 608 270 24 6 chr11 83525313 83525477 -38318379 + B3A SINE B2 1 167 -31 2 1222 1090 89 7 0 chr11 83526560 83526706 -38317150 + B1_Mus1 SINE Alu 1 147 -1 3 1222 2014 193 16 12 chr11 83527476 83527905 -38315951 - BGLII_B LTR ERVK -10 431 1 3 1222 741 174 14 0 chr11 83527908 83528046 -38315810 + B1_Mur4 SINE Alu 11 150 0 3 1222 268 105 35 17 chr11 83528063 83528121 -38315735 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 3 1222 299 192 92 40 chr11 83529264 83529340 -38314516 + L1MD3 LINE L1 7894 7973 -22 3 1222 285 231 77 0 chr11 83529542 83529607 -38314249 + ID4_ SINE ID 6 75 -8 3 1222 542 285 172 13 chr11 83529704 83530012 -38313844 + Lx8 LINE L1 6384 6740 -733 3 1222 30 27 0 0 chr11 83530035 83530072 -38313784 + AT_rich Low_complexity Low_complexity 1 37 0 3 1222 547 309 13 0 chr11 83530201 83530350 -38313506 + RSINE1 SINE B4 13 163 -2 3 1222 298 328 8 22 chr11 83530332 83530466 -38313390 + B3A SINE B2 67 198 0 3 1222 213 154 0 0 chr11 83530539 83530578 -38313278 + G-rich Low_complexity Low_complexity 6 44 0 4 1222 541 314 24 56 chr11 83530813 83531063 -38312793 - MER77 LTR ERVL -38 569 328 4 1222 213 214 141 14 chr11 83531106 83531177 -38312679 + MER5B DNA MER1_type 27 106 -72 4 1222 216 0 0 0 chr11 83531291 83531315 -38312541 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1222 403 314 71 26 chr11 83531354 83531678 -38312178 - L1MB7 LINE L1 -177 5997 5660 4 1222 584 273 8 0 chr11 83531834 83531966 -38311890 - RSINE1 SINE B4 -29 136 4 4 1222 3938 148 43 12 chr11 83532112 83532789 -38311067 - Lx5 LINE L1 -4 7046 6349 4 1222 2995 45 40 0 chr11 83532793 83533167 -38310689 - L1Md_F2 LINE L1 0 6582 6194 4 1222 760 131 0 0 chr11 83533167 83533274 -38310582 - Lx5 LINE L1 -704 6346 6240 4 1222 354 233 55 11 chr11 83533277 83533368 -38310488 - PB1D10 SINE Alu -2 115 21 4 1222 885 259 39 44 chr11 83533388 83533524 -38310332 - L1MB7 LINE L1 -760 5386 5256 4 1222 946 169 0 0 chr11 83533524 83533672 -38310184 - B1_Mur2 SINE Alu 0 149 2 4 1222 885 259 39 44 chr11 83533672 83533895 -38309961 - L1MB7 LINE L1 -891 5255 5029 4 1222 249 319 191 7 chr11 83533952 83534088 -38309768 - RSINE1 SINE B4 -2 163 3 5 1222 293 291 30 52 chr11 83534090 83534224 -38309632 - L1MB7 LINE L1 -1154 4992 4862 4 1222 371 228 155 19 chr11 83534842 83534945 -38308911 - PB1D10 SINE Alu 0 117 1 5 1222 349 254 146 0 chr11 83534955 83535085 -38308771 - B1F SINE Alu 0 149 1 5 1222 464 230 11 0 chr11 83535372 83535459 -38308397 - PB1D10 SINE Alu -27 90 3 5 1222 376 288 15 200 chr11 83535459 83535504 -38308352 - ID_B1 SINE B4 -53 171 79 5 1222 855 151 295 0 chr11 83535504 83535670 -38308186 - B3 SINE B2 0 216 2 5 1222 376 288 15 200 chr11 83535670 83535737 -38308119 - ID SINE ID -146 78 10 5 1222 620 195 0 7 chr11 83536530 83536685 -38307171 + CT-rich Low_complexity Low_complexity 1 154 0 5 1222 360 265 267 35 chr11 83536958 83537306 -38306550 - L1M5 LINE L1 -792 5354 4926 5 1222 1501 196 20 14 chr11 83537318 83537665 -38306191 + RLTR15 LTR ERVK 11 359 0 5 1222 1549 43 0 0 chr11 83537896 83538082 -38305774 - L1Md_A LINE L1 -1079 4804 4619 5 1222 7104 14 0 0 chr11 83538079 83538869 -38304987 + L1Md_A LINE L1 4796 5585 -298 5 1222 8533 33 1 0 chr11 83538870 83539864 -38303992 + L1Md_A LINE L1 5587 6581 -1 5 1222 3465 33 2 0 chr11 83540033 83540428 -38303428 - MTA_Mm LTR MaLR 0 396 1 6 1222 9386 33 5 0 chr11 83540428 83541521 -38302335 - MTA_Mm-int LTR MaLR 0 1098 1 6 1222 3511 25 2 0 chr11 83541521 83541916 -38301940 - MTA_Mm LTR MaLR 0 396 1 6 1222 23 0 0 0 chr11 83541940 83541963 -38301893 + AT_rich Low_complexity Low_complexity 1 23 0 6 1222 544 289 1 32 chr11 83543235 83543416 -38300440 + B3A SINE B2 43 215 -1 6 1222 984 135 0 0 chr11 83544194 83544335 -38299521 - B1_Mur3 SINE Alu -6 143 3 6 1222 2145 139 27 3 chr11 83544481 83544843 -38299013 + RLTR19C LTR ERVK 4 374 -132 6 1222 3007 133 66 11 chr11 83544843 83545374 -38298482 - RLTR20B2 LTR ERVK 0 560 1 6 1222 565 172 25 0 chr11 83545374 83545497 -38298359 + RLTR19C LTR ERVK 370 506 0 6 1222 21 0 0 0 chr11 83545555 83545576 -38298280 + AT_rich Low_complexity Low_complexity 1 21 0 6 1222 345 236 0 123 chr11 83546078 83546184 -38297672 - ID_B1 SINE B4 -11 213 121 6 1222 21 71 0 0 chr11 83546333 83546375 -38297481 + AT_rich Low_complexity Low_complexity 1 42 0 6 1222 2766 141 89 15 chr11 83546417 83546558 -38297298 + RMER6C LTR ERVK 1 147 -543 6 1222 2379 209 149 41 chr11 83546558 83547223 -38296633 + RMER19A LTR ERVK 1 737 0 7 1222 2766 141 89 15 chr11 83547223 83547630 -38296226 + RMER6C LTR ERVK 148 590 -100 6 1222 1108 137 0 27 chr11 83547636 83547823 -38296033 + RMER6B LTR ERVK 277 458 -3 7 1222 333 0 0 0 chr11 83548125 83548162 -38295694 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1222 297 0 0 0 chr11 83548162 83548194 -38295662 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1222 276 305 73 44 chr11 83548273 83548410 -38295446 - MER58B DNA MER1_type -17 324 184 7 1222 494 261 94 106 chr11 83549784 83550270 -38293586 + RLTR12B LTR ERVK 27 498 -30 7 1222 2163 258 96 33 chr11 83550887 83551700 -38292156 + L1MA4 LINE L1 5410 6273 -27 7 1222 291 122 0 0 chr11 83552393 83552442 -38291414 + (CATA)n Simple_repeat Simple_repeat 4 52 0 7 1222 689 194 6 0 chr11 83552451 83552626 -38291230 + (CA)n Simple_repeat Simple_repeat 2 177 0 7 1222 279 0 0 0 chr11 83553323 83553354 -38290502 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1222 280 232 0 15 chr11 83553354 83553425 -38290431 - MER5A1 DNA MER1_type -43 123 55 8 1222 306 0 0 0 chr11 83553589 83553623 -38290233 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 8 1222 435 306 73 113 chr11 83554428 83554730 -38289126 + B4A SINE B4 3 292 0 8 1222 310 195 0 24 chr11 83554865 83554949 -38288907 + (TG)n Simple_repeat Simple_repeat 2 83 0 8 1222 405 58 0 0 chr11 83556126 83556178 -38287678 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1222 2020 186 35 47 chr11 83556831 83557236 -38286620 - MTD LTR MaLR 0 419 20 8 1222 550 332 21 11 chr11 83558425 83558611 -38285245 + ORR1E LTR MaLR 1 188 -171 8 1222 525 219 83 89 chr11 83558699 83558879 -38284977 + ORR1E LTR MaLR 201 379 0 8 1222 222 118 0 0 chr11 83559158 83559192 -38284664 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1222 1929 151 132 14 chr11 83559356 83559719 -38284137 - MTC LTR MaLR 0 421 16 8 1222 548 226 17 9 chr11 83561018 83561134 -38282722 - B1F SINE Alu -27 122 6 8 1222 290 295 53 69 chr11 83562577 83562708 -38281148 - B1_Mur2 SINE Alu -17 132 4 9 1222 21 0 0 0 chr11 83562836 83562857 -38280999 + AT_rich Low_complexity Low_complexity 1 21 0 9 1222 24 0 0 0 chr11 83563306 83563330 -38280526 + AT_rich Low_complexity Low_complexity 1 24 0 9 1222 696 232 58 0 chr11 83563627 83563765 -38280091 + RSINE1 SINE B4 3 148 -17 9 1222 396 0 0 0 chr11 83563772 83563816 -38280040 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1222 12145 96 24 48 chr11 83563869 83565762 -38278094 + RLTR22_Mur LTR ERVK 2 1848 0 9 1222 251 223 340 0 chr11 83566173 83566267 -38277589 + ORR1D2 LTR MaLR 1 126 -244 9 1222 270 0 0 0 chr11 83566429 83566459 -38277397 + (TAA)n Simple_repeat Simple_repeat 1 30 0 9 1222 2791 70 3 16 chr11 83566540 83566915 -38276941 - MTA_Mm LTR MaLR 0 396 27 9 1222 208 317 187 28 chr11 83567690 83567797 -38276059 - MIRb SINE MIR -120 148 25 9 1222 180 0 0 0 chr11 83568691 83568711 -38275145 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1222 503 31 15 0 chr11 83568800 83568865 -38274991 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 1222 288 177 10 210 chr11 83569548 83569648 -38274208 + ID2 SINE ID 2 81 -2 1 1222 226 277 36 104 chr11 83570348 83570541 -38273315 + L2c LINE L2 3196 3375 -12 1 1222 1690 209 99 26 chr11 83570960 83571343 -38272513 - MTD LTR MaLR -8 411 1 1 1222 233 389 16 23 chr11 83571376 83571505 -38272351 + MIR SINE MIR 16 143 -119 1 1222 355 260 210 8 chr11 83572011 83572135 -38271721 + B1F SINE Alu 1 149 0 1 1222 327 25 0 0 chr11 83572978 83573018 -38270838 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1222 576 264 12 48 chr11 83573959 83574126 -38269730 - RSINE1 SINE B4 -2 163 3 1 1222 1126 90 0 0 chr11 83574614 83574759 -38269097 + B1_Mus1 SINE Alu 2 146 -2 1 1222 2026 112 33 63 chr11 83575195 83575529 -38268327 + ORR1A4 LTR MaLR 6 329 0 1 1222 10926 125 60 49 chr11 83575529 83577445 -38266411 + ORR1A4-int LTR MaLR 1 1936 -27 1 1222 1693 139 67 7 chr11 83577434 83577731 -38266125 + ORR1A4 LTR MaLR 14 328 -1 1 1222 22 56 0 0 chr11 83577759 83577795 -38266061 + AT_rich Low_complexity Low_complexity 1 36 0 1 1222 621 281 97 0 chr11 83577795 83577980 -38265876 + B3 SINE B2 3 205 -11 1 1222 352 279 47 0 chr11 83578147 83578233 -38265623 - 5S rRNA rRNA -23 98 9 1 1222 248 270 0 31 chr11 83578852 83578917 -38264939 - MER58A DNA MER1_type -100 124 62 1 1222 261 230 0 0 chr11 83579253 83579327 -38264529 + (TATG)n Simple_repeat Simple_repeat 2 75 0 1 1222 1005 173 10 16 chr11 83579987 83580181 -38263675 - B2_Mm2 SINE B2 0 195 3 1 1222 652 135 27 0 chr11 83581577 83581685 -38262171 + B3 SINE B2 6 122 -71 1 1222 947 237 47 1 chr11 83581763 83582015 -38261841 + B4A SINE B4 2 287 -5 1 1222 487 198 189 0 chr11 83582965 83583076 -38260780 + RSINE1 SINE B4 3 134 -31 1 1222 28 29 0 0 chr11 83583086 83583121 -38260735 + AT_rich Low_complexity Low_complexity 1 35 0 1 1222 1179 62 0 7 chr11 83583347 83583494 -38260362 - B1_Mm SINE Alu 0 147 2 1 1222 563 154 8 0 chr11 83583767 83583884 -38259972 + (TGGA)n Simple_repeat Simple_repeat 2 119 0 1 1222 462 143 18 12 chr11 83584450 83584541 -38259315 + B1_Mus2 SINE Alu 1 95 -54 1 1222 440 244 136 12 chr11 83584541 83584703 -38259153 + L1MC LINE L1 4795 4976 -1170 1 1222 331 229 28 9 chr11 83584716 83584822 -38259034 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1222 482 348 113 38 chr11 83584837 83585103 -38258753 - B4A SINE B4 -5 287 2 1 1222 629 218 9 0 chr11 83586416 83586526 -38257330 + B1_Mur1 SINE Alu 33 143 -6 1 1222 1490 205 190 89 chr11 83586614 83587072 -38256784 - MT2A LTR ERVL 0 475 1 1 1222 561 202 9 9 chr11 83587688 83587793 -38256063 + PB1D9 SINE Alu 15 119 -1 1 1222 496 262 62 75 chr11 83588114 83588275 -38255581 + RSINE1 SINE B4 5 163 -2 1 1222 517 293 13 26 chr11 83588367 83588518 -38255338 - RSINE1 SINE B4 -15 150 2 1 1222 2085 64 92 6 chr11 83588806 83589017 -38254839 - BGLII LTR ERVK -2 419 202 1 1222 612 0 0 0 chr11 83589017 83589085 -38254771 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1222 2085 64 92 6 chr11 83589085 83589189 -38254667 - BGLII LTR ERVK -220 201 78 1 1222 1206 48 0 7 chr11 83591051 83591199 -38252657 + B1_Mus1 SINE Alu 2 148 0 1 1222 23 33 0 0 chr11 83591366 83591396 -38252460 + AT_rich Low_complexity Low_complexity 1 30 0 1 1222 234 233 0 0 chr11 83591448 83591508 -38252348 + CT-rich Low_complexity Low_complexity 5 64 0 1 1222 281 192 19 0 chr11 83591516 83591568 -38252288 - Lx7 LINE L1 -424 7272 7220 1 1222 34 0 0 0 chr11 83591569 83591603 -38252253 + AT_rich Low_complexity Low_complexity 1 34 0 1 1222 387 141 0 0 chr11 83591603 83591667 -38252189 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1222 338 276 69 0 chr11 83592003 83592031 -38251825 + B4A SINE B4 54 87 -205 1 1222 699 245 21 7 chr11 83592031 83592165 -38251691 + B1F1 SINE Alu 3 139 -10 1 1222 207 0 0 0 chr11 83592165 83592188 -38251668 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1222 1187 117 323 11 chr11 83594290 83594570 -38249286 - ORR1C2 LTR MaLR -1 383 16 1 1222 1167 82 0 0 chr11 83595568 83595714 -38248142 + B1_Mm SINE Alu 2 147 0 1 1222 272 268 144 0 chr11 83596229 83596326 -38247530 + PB1D10 SINE Alu 1 111 -6 1 1222 404 254 66 22 chr11 83596336 83596473 -38247383 + B1F SINE Alu 2 144 -5 1 1222 325 289 52 0 chr11 83596486 83596583 -38247273 + B4A SINE B4 5 106 -186 1 1222 408 208 39 29 chr11 83596597 83596701 -38247155 + B4A SINE B4 187 291 -1 1 1222 192 152 0 0 chr11 83596795 83596828 -38247028 + T-rich Low_complexity Low_complexity 1 33 0 1 1222 441 219 4 36 chr11 83597508 83597757 -38246099 + (TG)n Simple_repeat Simple_repeat 1 240 0 1 1222 722 272 63 110 chr11 83597768 83597971 -38245885 - B4A SINE B4 -5 287 86 1 1222 1201 48 0 0 chr11 83597971 83598117 -38245739 - B1_Mus1 SINE Alu -1 147 2 1 1222 722 272 63 110 chr11 83598117 83598214 -38245642 - B4A SINE B4 -207 85 1 1 1222 845 204 70 40 chr11 83598235 83598434 -38245422 - B3 SINE B2 -5 211 7 1 1222 26 0 0 27 chr11 83598709 83598730 -38245126 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 1219 104 17 0 chr11 83598730 83598903 -38244953 - B2_Mm1t SINE B2 -14 179 4 1 1222 26 0 0 27 chr11 83598903 83598918 -38244938 + AT_rich Low_complexity Low_complexity 1 15 0 1 1222 250 232 167 29 chr11 83599162 83599264 -38244592 - MER5B DNA MER1_type -17 161 46 1 1222 875 227 52 15 chr11 83599376 83599577 -38244279 - B3A SINE B2 -3 192 1 1 1222 235 298 115 0 chr11 83599620 83599724 -38244132 - PB1D10 SINE Alu 0 117 2 1 1222 435 288 86 16 chr11 83601077 83601313 -38242543 + L1MB7 LINE L1 5687 5941 -243 1 1222 554 207 78 0 chr11 83601356 83601472 -38242384 + B3A SINE B2 48 172 -26 1 1222 210 71 0 0 chr11 83601527 83601555 -38242301 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1 1222 22 56 0 0 chr11 83601574 83601610 -38242246 + AT_rich Low_complexity Low_complexity 1 36 0 1 1222 1126 102 0 0 chr11 83601619 83601766 -38242090 + B1_Mus1 SINE Alu 2 148 0 1 1222 212 222 32 0 chr11 83601768 83601831 -38242025 + A-rich Low_complexity Low_complexity 2 66 0 1 1222 456 269 57 57 chr11 83602289 83602466 -38241390 - MER20 DNA MER1_type -42 177 1 1 1222 478 236 85 0 chr11 83603226 83603332 -38240524 - RSINE1 SINE B4 -29 136 22 1 1222 432 0 0 0 chr11 83603347 83603395 -38240461 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1222 333 0 0 0 chr11 83603395 83603431 -38240425 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1222 793 141 0 11 chr11 83603433 83603613 -38240243 + CT-rich Low_complexity Low_complexity 1 178 0 1 1222 189 0 0 0 chr11 83604007 83604028 -38239828 + (CCCCAG)n Simple_repeat Simple_repeat 3 23 0 1 1222 28 0 0 0 chr11 83604119 83604147 -38239709 + AT_rich Low_complexity Low_complexity 1 28 0 1 1222 686 199 71 8 chr11 83604339 83604466 -38239390 + B1_Mur2 SINE Alu 2 136 -13 1 1222 519 183 23 0 chr11 83604521 83604652 -38239204 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 1222 595 174 271 13 chr11 83604746 83604897 -38238959 - B3 SINE B2 0 216 27 1 1222 351 149 33 74 chr11 83604898 83605010 -38238846 - B1F2 SINE Alu -1 148 45 1 1222 361 90 51 0 chr11 83605249 83605327 -38238529 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 1 1222 216 0 0 0 chr11 83605327 83605351 -38238505 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 1 1222 375 141 0 0 chr11 83605369 83605433 -38238423 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 1 1222 805 150 51 29 chr11 83605438 83605575 -38238281 - B1_Mus1 SINE Alu -6 142 3 1 1222 1304 148 9 5 chr11 83605587 83605798 -38238058 - B3 SINE B2 -4 212 1 1 1222 209 33 33 0 chr11 83607261 83607291 -38236565 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1222 513 187 44 0 chr11 83607483 83607574 -38236282 - RSINE1 SINE B4 -25 140 46 1 1222 397 149 15 0 chr11 83607591 83607658 -38236198 + B1_Mur2 SINE Alu 80 147 -2 1 1222 331 216 40 13 chr11 83608198 83608273 -38235583 - ID4_ SINE ID -6 77 1 1 1222 242 248 71 71 chr11 83609130 83609256 -38234600 + MIRb SINE MIR 29 154 -114 1 1222 299 239 0 154 chr11 83610184 83610288 -38233568 + MT2B LTR ERVL 153 240 -361 1 1222 554 237 8 58 chr11 83610201 83610322 -38233534 + B1_Mur2 SINE Alu 3 117 -32 1 1222 285 109 0 0 chr11 83611504 83611550 -38232306 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 1 1222 356 255 30 50 chr11 83611704 83611803 -38232053 + B1F SINE Alu 53 149 0 1 1222 572 224 88 7 chr11 83611837 83611985 -38231871 + RSINE1 SINE B4 2 161 -4 1 1222 323 237 241 6 chr11 83612323 83612497 -38231359 + ID_B1 SINE B4 3 217 -7 1 1222 899 162 207 0 chr11 83612642 83612821 -38231035 - B3 SINE B2 0 216 1 1 1222 483 18 0 0 chr11 83613438 83613494 -38230362 + (CTG)n Simple_repeat Simple_repeat 3 58 0 1 1222 525 265 57 35 chr11 83613756 83613897 -38229959 + B1_Mur3 SINE Alu 6 149 0 1 1222 252 0 0 0 chr11 83614081 83614109 -38229747 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1222 458 217 79 20 chr11 83615504 83615625 -38228231 + B1_Mur1 SINE Alu 1 128 -21 1 1222 207 0 0 0 chr11 83615702 83615725 -38228131 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1222 402 222 236 8 chr11 83615890 83616017 -38227839 + MER53 DNA hAT 9 164 -29 1 1222 386 277 0 0 chr11 83617239 83617322 -38226534 - ID4 SINE ID 0 83 1 1 1222 549 200 96 0 chr11 83617435 83617550 -38226306 + RSINE1 SINE B4 36 161 -4 2 1222 239 338 111 26 chr11 83617573 83617633 -38226223 - CYRA11_Mm Unknown Y-chromosome -173 444 365 2 1222 787 170 185 11 chr11 83617633 83617811 -38226045 + URR1B DNA MER1_type 1 209 -16 2 1222 194 202 143 57 chr11 83618175 83618280 -38225576 - L2c LINE L2 -80 3307 3194 2 1222 1732 264 99 59 chr11 83618797 83619361 -38224495 + MTE-int LTR MaLR 941 1527 -53 2 1222 531 333 75 42 chr11 83619361 83619693 -38224163 + ORR1E LTR MaLR 1 343 -16 2 1222 1041 215 33 14 chr11 83619813 83620025 -38223831 - B3 SINE B2 0 216 1 2 1222 1037 190 60 32 chr11 83620025 83620243 -38223613 - B4A SINE B4 -62 230 7 2 1222 471 78 0 0 chr11 83620522 83620586 -38223270 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 2 1222 2079 138 75 17 chr11 83620600 83620947 -38222909 - ORR1B2 LTR MaLR 0 367 1 2 1222 250 338 0 0 chr11 83620979 83621053 -38222803 - PB1 SINE Alu -20 107 34 2 1222 293 382 88 30 chr11 83621850 83622112 -38221744 + MLT1J-int LTR MaLR 678 954 -433 2 1222 795 282 82 36 chr11 83622294 83622573 -38221283 - B4A SINE B4 0 292 1 2 1222 209 224 72 29 chr11 83622943 83623012 -38220844 - L3 LINE CR1 -2253 2236 2165 2 1222 1338 251 15 65 chr11 83623400 83623797 -38220059 + Lx6 LINE L1 7072 7448 -12 2 1223 181 241 74 0 chr11 83625102 83625156 -38218700 - MIRm SINE MIR -135 141 84 2 1223 234 239 116 29 chr11 83625372 83625441 -38218415 + Arthur1 DNA Tip100 3472 3546 -401 2 1223 295 287 94 77 chr11 83625445 83625697 -38218159 - B4A SINE B4 -12 280 43 2 1223 2612 131 38 5 chr11 83625854 83626252 -38217604 - MTC LTR MaLR -8 413 3 2 1223 249 228 17 17 chr11 83627066 83627124 -38216732 - MER81 DNA AcHobo -40 74 17 2 1223 1111 197 164 48 chr11 83627583 83627637 -38216219 - MTE2a LTR MaLR -2 377 317 2 1223 225 0 0 0 chr11 83627637 83627662 -38216194 + (G)n Simple_repeat Simple_repeat 1 25 0 2 1223 1111 197 164 48 chr11 83627662 83627943 -38215913 - MTE2a LTR MaLR -63 316 4 2 1223 825 269 54 25 chr11 83627943 83628175 -38215681 + B4 SINE B4 51 289 -3 2 1223 576 42 0 0 chr11 83628179 83628250 -38215606 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1223 485 299 88 0 chr11 83628250 83628387 -38215469 + RSINE1 SINE B4 13 161 -4 2 1223 190 227 23 0 chr11 83628559 83628603 -38215253 - MIR SINE MIR -94 168 124 2 1223 25 0 0 0 chr11 83629179 83629204 -38214652 + AT_rich Low_complexity Low_complexity 1 25 0 2 1223 1123 82 0 7 chr11 83629633 83629781 -38214075 + B1_Mus2 SINE Alu 1 147 0 2 1223 686 71 0 39 chr11 83629859 83629961 -38213895 - URR1B DNA MER1_type -1 224 127 2 1223 426 260 10 20 chr11 83629997 83630020 -38213836 + ID SINE ID 59 80 -144 2 1223 227 386 34 11 chr11 83630020 83630109 -38213747 + PB1 SINE Alu 1 91 -36 2 1223 697 103 8 8 chr11 83630959 83631077 -38212779 + (TC)n Simple_repeat Simple_repeat 1 118 0 2 1223 193 279 12 81 chr11 83631973 83632059 -38211797 - MIRb SINE MIR -30 238 159 2 1223 189 0 0 0 chr11 83632516 83632537 -38211319 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2 1223 788 176 15 0 chr11 83632538 83632669 -38211187 - B1_Mur1 SINE Alu -16 133 1 2 1223 255 31 0 0 chr11 83632678 83632710 -38211146 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2 1223 408 308 0 25 chr11 83632720 83632840 -38211016 + PB1D10 SINE Alu 1 117 0 2 1223 426 305 9 9 chr11 83632854 83632955 -38210901 + PB1D7 SINE Alu 7 108 -12 2 1223 279 79 0 0 chr11 83632955 83632993 -38210863 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1223 311 213 156 9 chr11 83633056 83633165 -38210691 - L2a LINE L2 -1 3425 3301 2 1223 207 0 0 0 chr11 83633716 83633739 -38210117 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1223 310 303 40 20 chr11 83633757 83633858 -38209998 + MIRm SINE MIR 65 167 -109 2 1223 260 302 92 46 chr11 83633857 83634049 -38209807 + L2c LINE L2 3015 3212 -163 2 1223 23 0 0 0 chr11 83634192 83634215 -38209641 + AT_rich Low_complexity Low_complexity 1 23 0 2 1223 303 28 0 0 chr11 83634215 83634251 -38209605 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 2 1223 904 204 63 26 chr11 83634257 83634448 -38209408 - B3 SINE B2 -18 198 1 2 1223 265 314 103 32 chr11 83634743 83635112 -38208744 - L1MEe LINE L1 -4329 525 131 2 1223 738 209 14 0 chr11 83635132 83635271 -38208585 + B1_Mur1 SINE Alu 6 146 -3 2 1223 180 0 0 0 chr11 83635292 83635312 -38208544 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1223 302 265 87 58 chr11 83635323 83635366 -38208490 - PB1D10 SINE Alu 0 117 75 2 1223 3038 129 49 141 chr11 83635366 83635552 -38208304 + RMER15 LTR ERVL 1 154 -421 2 1223 1162 56 0 7 chr11 83635552 83635695 -38208161 + B1_Mm SINE Alu 1 142 -5 2 1223 234 62 0 0 chr11 83635698 83635730 -38208126 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1223 3038 129 49 141 chr11 83635730 83636172 -38207684 + RMER15 LTR ERVL 155 575 0 2 1223 302 265 87 58 chr11 83636172 83636232 -38207624 - PB1D10 SINE Alu -43 74 15 2 1223 684 99 0 0 chr11 83636510 83636621 -38207235 + (GA)n Simple_repeat Simple_repeat 1 111 0 2 1223 593 249 24 87 chr11 83637013 83637220 -38206636 + B3A SINE B2 2 195 -3 2 1223 1225 35 14 0 chr11 83637458 83637602 -38206254 - B1_Mm SINE Alu 0 147 2 2 1223 321 250 12 36 chr11 83638152 83638235 -38205621 - ID4_ SINE ID -1 82 2 2 1223 219 347 71 16 chr11 83638245 83638371 -38205485 - L2b LINE L2 -7 3368 3236 2 1223 266 277 45 44 chr11 83638604 83638721 -38205135 + L2c LINE L2 3179 3328 -59 2 1223 342 303 54 34 chr11 83638900 83639047 -38204809 - MER5A1 DNA MER1_type -2 164 15 2 1223 483 33 0 0 chr11 83640259 83640320 -38203536 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1223 631 235 0 0 chr11 83640320 83640439 -38203417 - RSINE1 SINE B4 -44 121 3 2 1223 929 132 0 0 chr11 83640840 83640969 -38202887 + B1_Mur2 SINE Alu 12 140 -9 2 1223 297 0 0 0 chr11 83640969 83641002 -38202854 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1223 240 350 12 0 chr11 83641045 83641125 -38202731 - ID4 SINE ID 0 83 3 2 1223 535 220 10 0 chr11 83641125 83641225 -38202631 - PB1D10 SINE Alu -5 112 12 2 1223 224 300 0 32 chr11 83641175 83641237 -38202619 - B4A SINE B4 -146 146 87 2 1223 224 349 67 39 chr11 83641826 83642005 -38201851 - MIR SINE MIR -28 234 51 2 1223 816 128 0 0 chr11 83642856 83643012 -38200844 + (TATATG)n Simple_repeat Simple_repeat 5 160 0 2 1223 461 17 17 0 chr11 83643010 83643068 -38200788 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2 1223 274 251 207 30 chr11 83643068 83643221 -38200635 - MIR SINE MIR -4 264 84 2 1223 517 70 40 10 chr11 83643355 83643456 -38200400 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 2 1223 231 279 29 0 chr11 83643463 83643531 -38200325 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1223 609 269 139 50 chr11 83643540 83643798 -38200058 - B4A SINE B4 -6 286 6 2 1223 205 319 128 52 chr11 83643817 83643989 -38199867 + MIRm SINE MIR 2 186 -90 2 1223 1499 52 0 63 chr11 83644234 83644441 -38199415 - B2_Mm2 SINE B2 0 195 2 2 1223 297 0 0 0 chr11 83644802 83644835 -38199021 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1223 528 30 0 0 chr11 83644835 83644900 -38198956 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1223 1043 188 61 0 chr11 83644936 83645133 -38198723 + B3 SINE B2 2 210 -6 2 1223 981 217 192 0 chr11 83645259 83645499 -38198357 + B4A SINE B4 1 286 -6 2 1223 226 266 29 96 chr11 83646593 83646697 -38197159 + MIR3 SINE MIR 3 99 -109 2 1223 24 0 0 0 chr11 83647120 83647144 -38196712 + GC_rich Low_complexity Low_complexity 1 24 0 2 1223 264 91 0 0 chr11 83647361 83647405 -38196451 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1223 494 285 88 16 chr11 83648214 83648339 -38195517 + RSINE1 SINE B4 16 149 -16 2 1223 306 0 0 0 chr11 83648342 83648376 -38195480 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1223 657 307 80 62 chr11 83649001 83649438 -38194418 - L2a LINE L2 -4 3422 2978 2 1223 339 322 106 75 chr11 83649454 83649719 -38194137 - L2a LINE L2 -537 2882 2610 2 1223 614 245 6 89 chr11 83649723 83649902 -38193954 + RSINE1 SINE B4 2 165 0 2 1223 271 136 0 33 chr11 83650857 83650918 -38192938 + CT-rich Low_complexity Low_complexity 5 63 0 2 1223 211 337 63 63 chr11 83650978 83651152 -38192704 - MIR3 SINE MIR -13 195 22 2 1223 679 202 3 3 chr11 83651595 83651909 -38191947 + (TG)n Simple_repeat Simple_repeat 1 314 0 2 1223 588 242 142 24 chr11 83651909 83652109 -38191747 - B3A SINE B2 -2 214 2 2 1223 207 0 0 0 chr11 83652140 83652163 -38191693 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1223 625 207 43 7 chr11 83652482 83652623 -38191233 - B1F SINE Alu -1 148 3 2 1223 206 167 21 0 chr11 83653277 83653294 -38190562 + polypyrimidine Low_complexity Low_complexity 33 49 0 2 1223 1060 80 17 22 chr11 83653294 83653474 -38190382 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 2 1223 206 167 21 0 chr11 83653474 83653504 -38190352 + polypyrimidine Low_complexity Low_complexity 2 32 0 2 1223 1007 112 11 17 chr11 83653507 83653688 -38190168 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1223 308 304 82 55 chr11 83653724 83653870 -38189986 - HAL1-3A_ME LINE L1 -420 2438 2289 2 1223 264 200 0 0 chr11 83653881 83653941 -38189915 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1223 520 180 301 30 chr11 83654027 83654193 -38189663 + B3 SINE B2 1 211 -5 2 1223 372 43 0 0 chr11 83654777 83654823 -38189033 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1223 929 243 130 32 chr11 83654823 83655070 -38188786 - B4A SINE B4 -21 271 1 3 1223 1883 144 135 25 chr11 83655099 83655454 -38188402 + ORR1B1 LTR MaLR 1 394 0 3 1223 692 210 16 0 chr11 83655681 83655805 -38188051 - ID_B1 SINE B4 -17 207 82 3 1223 275 266 62 111 chr11 83655684 83655828 -38188028 + YREP_Mm Unknown Unknown 195 331 -1481 3 1223 449 205 9 0 chr11 83656119 83656231 -38187625 + (TG)n Simple_repeat Simple_repeat 1 113 0 3 1223 545 291 8 8 chr11 83656283 83656411 -38187445 - B4A SINE B4 -65 227 100 3 1223 294 333 65 0 chr11 83656533 83656626 -38187230 - MIRc SINE MIR -125 143 45 3 1223 822 181 14 14 chr11 83656736 83656876 -38186980 + B1_Mur3 SINE Alu 1 140 -9 3 1223 354 98 0 0 chr11 83656876 83656927 -38186929 + (CAT)n Simple_repeat Simple_repeat 1 51 0 3 1223 476 283 0 94 chr11 83656927 83656940 -38186916 + ID_B1 SINE B4 216 224 0 3 1223 378 0 0 0 chr11 83657851 83657893 -38185963 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1223 724 230 22 0 chr11 83657905 83658044 -38185812 - RSINE1 SINE B4 -21 144 3 3 1223 25 51 0 0 chr11 83658082 83658121 -38185735 + AT_rich Low_complexity Low_complexity 1 39 0 3 1223 1083 189 71 18 chr11 83658166 83658392 -38185464 + 7SK RNA RNA 1 238 -93 3 1223 1233 85 0 0 chr11 83658884 83659202 -38184654 + (TG)n Simple_repeat Simple_repeat 1 318 0 3 1223 268 241 35 0 chr11 83659303 83659361 -38184495 + polypurine Low_complexity Low_complexity 1 60 0 3 1223 661 179 93 36 chr11 83659815 83659954 -38183902 - B1_Mus1 SINE Alu 0 148 2 3 1223 262 174 53 21 chr11 83659960 83660054 -38183802 + (TTTG)n Simple_repeat Simple_repeat 2 98 0 3 1223 1184 75 0 0 chr11 83660057 83660203 -38183653 - B1_Mus2 SINE Alu 0 147 2 3 1223 484 247 145 31 chr11 83660206 83660365 -38183491 + MER58A DNA MER1_type 48 224 0 3 1223 212 234 188 0 chr11 83660427 83660491 -38183365 - PB1D10 SINE Alu -40 77 2 3 1223 379 265 82 0 chr11 83660635 83660733 -38183123 - ID_B1 SINE B4 -3 221 116 3 1223 532 191 0 0 chr11 83660861 83660950 -38182906 + B1_Mur1 SINE Alu 20 108 -41 3 1223 910 236 38 5 chr11 83660973 83661182 -38182674 + B3 SINE B2 1 216 0 3 1223 858 211 32 16 chr11 83661196 83661384 -38182472 + B3A SINE B2 3 193 -5 3 1223 1228 175 0 50 chr11 83661390 83661612 -38182244 + B3 SINE B2 6 216 0 3 1223 1060 124 0 11 chr11 83662446 83662626 -38181230 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 3 1223 867 118 0 0 chr11 83662982 83663117 -38180739 + (TG)n Simple_repeat Simple_repeat 2 136 0 3 1223 224 87 0 61 chr11 83667275 83667324 -38176532 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1223 218 125 50 0 chr11 83670019 83670059 -38173797 + G-rich Low_complexity Low_complexity 1 42 0 3 1223 21 0 0 0 chr11 83670488 83670509 -38173347 + GC_rich Low_complexity Low_complexity 1 21 0 3 1223 243 0 0 0 chr11 83670590 83670617 -38173239 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 3 1223 236 96 36 55 chr11 83670645 83670694 -38173162 + T-rich Low_complexity Low_complexity 6 54 0 3 1223 396 0 0 0 chr11 83670694 83670738 -38173118 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1223 916 148 28 7 chr11 83670743 83670886 -38172970 - B1_Mus2 SINE Alu -1 146 1 3 1223 835 183 0 11 chr11 83671073 83671255 -38172601 + CT-rich Low_complexity Low_complexity 1 180 0 3 1223 237 325 0 16 chr11 83672095 83672181 -38171675 - L2b LINE L2 -219 3168 3086 3 1223 194 108 0 51 chr11 83673012 83673051 -38170805 + GA-rich Low_complexity Low_complexity 1 37 0 3 1223 605 168 32 29 chr11 83674157 83674438 -38169418 + (CA)n Simple_repeat Simple_repeat 1 282 0 3 1223 856 160 21 7 chr11 83674721 83674866 -38168990 + B1_Mur4 SINE Alu 1 147 -3 3 1223 336 48 0 0 chr11 83675125 83675167 -38168689 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 3 1223 544 304 7 29 chr11 83675704 83675843 -38168013 + RSINE1 SINE B4 4 139 -26 3 1223 324 0 0 0 chr11 83675844 83675880 -38167976 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1223 457 227 8 68 chr11 83676177 83676295 -38167561 + PB1D10 SINE Alu 2 112 -5 3 1223 234 325 39 32 chr11 83676401 83676425 -38167431 - RMER12 LTR ERVK -466 856 831 3 1223 1074 144 0 0 chr11 83676425 83676605 -38167251 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1223 234 325 39 32 chr11 83676605 83676736 -38167120 - RMER12 LTR ERVK -492 830 700 3 1223 189 0 0 0 chr11 83679260 83679281 -38164575 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1223 182 288 238 0 chr11 83679304 83679384 -38164472 - MIR SINE MIR -72 136 38 3 1223 225 200 34 214 chr11 83679870 83679959 -38163897 - MT2A LTR ERVL -302 231 159 3 1223 572 40 13 0 chr11 83680235 83680310 -38163546 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 3 1223 465 19 0 0 chr11 83680386 83680440 -38163416 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1223 306 0 0 0 chr11 83680440 83680473 -38163383 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1223 547 323 30 42 chr11 83680566 83680802 -38163054 - B4A SINE B4 -59 233 1 3 1223 351 333 53 21 chr11 83682259 83682446 -38161410 - MIRb SINE MIR -15 253 61 3 1223 378 94 0 0 chr11 83682533 83682597 -38161259 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 3 1223 465 263 0 0 chr11 83683642 83683974 -38159882 + (TG)n Simple_repeat Simple_repeat 1 332 0 3 1223 215 238 48 0 chr11 83683974 83684058 -38159798 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1223 929 241 38 31 chr11 83684108 83684369 -38159487 - MER58B DNA MER1_type -3 338 76 3 1223 680 258 34 38 chr11 83684369 83684588 -38159268 + B3A SINE B2 2 203 -13 3 1223 275 269 25 37 chr11 83684614 83684695 -38159161 + MER5B DNA MER1_type 96 175 -3 3 1223 288 239 87 0 chr11 83684702 83684794 -38159062 - MER5A1 DNA MER1_type -4 162 63 3 1223 299 282 146 22 chr11 83684946 83685124 -38158732 + MIRb SINE MIR 9 208 -60 3 1223 213 200 0 107 chr11 83686478 83686534 -38157322 - MER5A DNA MER1_type -4 185 136 3 1223 231 157 0 0 chr11 83688234 83688285 -38155571 + (ATG)n Simple_repeat Simple_repeat 1 51 0 3 1223 680 91 23 8 chr11 83689091 83689224 -38154632 + (CA)n Simple_repeat Simple_repeat 2 136 0 3 1223 1171 95 0 0 chr11 83689349 83689497 -38154359 - B1_Mus1 SINE Alu 0 148 1 3 1223 180 0 0 0 chr11 83689615 83689635 -38154221 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1223 995 81 29 0 chr11 83689756 83689892 -38153964 + B2_Mm2 SINE B2 1 140 -55 3 1223 222 37 0 0 chr11 83689903 83689930 -38153926 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1223 1349 35 12 0 chr11 83690502 83690672 -38153184 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 3 1223 945 302 118 41 chr11 83692150 83692187 -38151669 - Tigger9b DNA MER2_type 0 624 583 3 1223 351 0 0 0 chr11 83692187 83692226 -38151630 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1223 945 302 118 41 chr11 83692226 83692654 -38151202 - Tigger9b DNA MER2_type -42 582 123 3 1223 1354 162 0 26 chr11 83692923 83693151 -38150705 + URR1A DNA MER1_type 4 225 -1 3 1223 895 242 22 58 chr11 83693427 83693651 -38150205 + B4 SINE B4 8 223 -69 3 1223 426 280 15 46 chr11 83694298 83694429 -38149427 - MIRb SINE MIR -119 149 23 3 1223 24 0 0 0 chr11 83694947 83694971 -38148885 + AT_rich Low_complexity Low_complexity 1 24 0 3 1223 247 167 0 0 chr11 83695637 83695679 -38148177 - L3 LINE CR1 -188 4301 4260 3 1223 435 332 118 25 chr11 83696823 83697027 -38146829 + MIRb SINE MIR 6 228 -40 3 1223 252 0 0 0 chr11 83697167 83697195 -38146661 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1223 841 198 175 6 chr11 83697913 83698096 -38145760 - B3 SINE B2 -1 215 2 3 1223 950 215 82 5 chr11 83698267 83698463 -38145393 + B3 SINE B2 1 211 -5 3 1223 226 228 123 47 chr11 83698488 83698594 -38145262 + ID2 SINE ID 2 115 -37 3 1223 251 283 274 62 chr11 83698989 83699230 -38144626 + B4A SINE B4 1 292 0 3 1223 194 118 57 38 chr11 83699264 83699370 -38144486 + (CA)n Simple_repeat Simple_repeat 2 109 0 3 1223 495 158 52 24 chr11 83699388 83699856 -38144000 + (CA)n Simple_repeat Simple_repeat 1 481 0 3 1223 253 343 0 0 chr11 83699946 83700016 -38143840 + MIRb SINE MIR 120 189 -79 3 1223 218 263 93 0 chr11 83700225 83700304 -38143552 + MIRb SINE MIR 91 182 -86 3 1223 720 184 24 0 chr11 83701163 83701288 -38142568 + B1_Mus2 SINE Alu 19 146 -1 3 1223 1192 81 11 0 chr11 83701727 83701901 -38141955 + (GGGA)n Simple_repeat Simple_repeat 2 177 0 3 1223 350 302 25 16 chr11 83701997 83702118 -38141738 + MIR SINE MIR 26 147 -115 3 1223 232 290 116 0 chr11 83702359 83702428 -38141428 + L2a LINE L2 3307 3383 -43 3 1223 347 231 32 21 chr11 83702988 83703081 -38140775 + MIRb SINE MIR 56 149 -119 3 1223 670 203 45 30 chr11 83704124 83704256 -38139600 + RSINE1 SINE B4 2 135 -30 3 1223 704 115 9 0 chr11 83704260 83704373 -38139483 + (TC)n Simple_repeat Simple_repeat 1 114 0 3 1223 444 77 0 0 chr11 83704381 83704446 -38139410 + (CAGAGA)n Simple_repeat Simple_repeat 6 70 0 3 1223 369 0 0 0 chr11 83704976 83705017 -38138839 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1223 1081 90 0 0 chr11 83705364 83705498 -38138358 + B1_Mus1 SINE Alu 2 135 -13 3 1223 21 0 0 0 chr11 83705500 83705521 -38138335 + GC_rich Low_complexity Low_complexity 1 21 0 3 1223 366 23 0 0 chr11 83705805 83705848 -38138008 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1223 513 84 0 0 chr11 83705848 83705918 -38137938 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1223 235 265 39 100 chr11 83707277 83707407 -38136449 - MER117 DNA MER1_type -74 123 2 4 1223 277 271 29 0 chr11 83707488 83707558 -38136298 + ID4 SINE ID 4 75 -8 4 1223 1203 279 21 14 chr11 83707587 83707870 -38135986 + B4 SINE B4 8 292 0 4 1223 203 250 0 0 chr11 83707872 83707916 -38135940 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1223 660 157 321 0 chr11 83708301 83708460 -38135396 + B3 SINE B2 3 212 -4 4 1223 23 0 0 0 chr11 83708460 83708483 -38135373 + AT_rich Low_complexity Low_complexity 1 23 0 4 1223 362 346 70 54 chr11 83709062 83709303 -38134553 - Charlie13b DNA Charlie -70 442 198 4 1223 207 0 0 0 chr11 83709668 83709691 -38134165 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1223 271 261 15 0 chr11 83711654 83711719 -38132137 + B1F1 SINE Alu 1 66 -83 4 1223 313 304 109 15 chr11 83711775 83711912 -38131944 - MIR3 SINE MIR -56 152 3 4 1223 263 270 116 1 chr11 83712386 83712527 -38131329 + MIRb SINE MIR 4 170 -98 4 1223 393 117 0 0 chr11 83712874 83712934 -38130922 + (TGGG)n Simple_repeat Simple_repeat 2 61 0 4 1223 538 261 0 9 chr11 83713305 83713421 -38130435 - B1F2 SINE Alu -34 115 1 4 1223 381 324 39 39 chr11 83713421 83713449 -38130407 - B4A SINE B4 -77 179 62 4 1223 798 262 20 5 chr11 83714297 83714500 -38129356 - B3 SINE B2 -10 206 1 4 1223 199 262 107 0 chr11 83714867 83714951 -38128905 + L2 LINE L2 2169 2261 -1158 4 1223 181 330 105 79 chr11 83715102 83715520 -38128336 + L2 LINE L2 2435 2863 -556 4 1223 508 235 148 42 chr11 83715993 83716135 -38127721 + RSINE1 SINE B4 2 158 -7 4 1223 201 262 111 12 chr11 83716563 83716644 -38127212 + L3 LINE CR1 930 1018 -3471 4 1223 203 271 0 0 chr11 83717671 83717719 -38126137 + MER5A DNA MER1_type 27 74 -115 4 1223 459 266 54 8 chr11 83717721 83717850 -38126006 + RSINE1 SINE B4 2 136 -29 4 1223 288 120 0 0 chr11 83717853 83717903 -38125953 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1223 350 42 0 20 chr11 83719626 83719675 -38124181 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 4 1223 198 273 45 15 chr11 83719954 83720021 -38123835 - L2c LINE L2 -16 3371 3303 4 1223 542 259 51 34 chr11 83720183 83720359 -38123497 + B3A SINE B2 2 180 -18 4 1223 1229 144 8 101 chr11 83720512 83720759 -38123097 - URR1B DNA MER1_type -1 224 1 4 1223 193 298 94 26 chr11 83720802 83720919 -38122937 + L3 LINE CR1 3735 3859 -630 4 1223 215 189 0 54 chr11 83722055 83722111 -38121745 + CT-rich Low_complexity Low_complexity 3 55 0 4 1223 459 0 0 0 chr11 83722333 83722384 -38121472 + (CATA)n Simple_repeat Simple_repeat 1 51 0 4 1223 891 135 5 33 chr11 83722568 83722718 -38121138 - B1_Mus2 SINE Alu 0 147 3 4 1223 384 223 0 80 chr11 83722618 83722730 -38121126 - MT2B LTR ERVL -344 257 155 4 1223 781 228 183 0 chr11 83722865 83723057 -38120799 + B4A SINE B4 2 229 -63 4 1223 247 188 23 0 chr11 83723057 83723110 -38120746 + B2_Mm2 SINE B2 1 58 -140 4 1223 2064 172 79 39 chr11 83723110 83723526 -38120330 + Lx5 LINE L1 6618 7050 0 4 1223 665 231 87 0 chr11 83723533 83723706 -38120150 + B3 SINE B2 29 216 0 4 1223 734 153 22 7 chr11 83723733 83723871 -38119985 + B1_Mus1 SINE Alu 9 148 0 4 1223 480 243 0 128 chr11 83724205 83724361 -38119495 + RSINE1 SINE B4 1 136 -29 4 1223 22 35 0 0 chr11 83724361 83724390 -38119466 + AT_rich Low_complexity Low_complexity 1 29 0 4 1223 201 147 0 0 chr11 83724862 83724896 -38118960 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 4 1223 1219 148 14 24 chr11 83724903 83725111 -38118745 - B3 SINE B2 -6 210 5 4 1223 238 277 15 0 chr11 83725637 83725702 -38118154 + ID4 SINE ID 15 80 -3 4 1223 312 211 122 0 chr11 83725968 83726058 -38117798 + L2a LINE L2 3298 3398 -28 4 1223 230 250 29 14 chr11 83726385 83726454 -38117402 + GA-rich Low_complexity Low_complexity 1 70 0 4 1223 566 156 0 0 chr11 83726616 83726706 -38117150 - B3 SINE B2 -126 90 1 4 1223 477 0 0 0 chr11 83728081 83728134 -38115722 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1223 234 0 0 0 chr11 83728855 83728881 -38114975 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1223 1094 201 24 0 chr11 83728898 83729107 -38114749 - B3 SINE B2 -1 215 2 4 1223 265 173 0 19 chr11 83729372 83729425 -38114431 + B1_Mus2 SINE Alu 1 52 -95 4 1223 219 36 0 0 chr11 83729448 83729476 -38114380 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1223 445 283 8 32 chr11 83729655 83729779 -38114077 - PB1 SINE Alu -5 122 2 4 1223 861 74 8 0 chr11 83730106 83730228 -38113628 + B1_Mus2 SINE Alu 25 147 0 4 1223 232 309 82 92 chr11 83730253 83730449 -38113407 + Charlie16a DNA MER1_type 63 256 -86 4 1223 969 172 0 0 chr11 83730894 83731074 -38112782 + (TTG)n Simple_repeat Simple_repeat 1 180 0 4 1223 334 206 0 0 chr11 83731095 83731158 -38112698 - B1_Mur1 SINE Alu -9 140 78 4 1223 540 178 0 0 chr11 83731231 83731377 -38112479 + (TG)n Simple_repeat Simple_repeat 2 147 0 4 1223 282 123 0 0 chr11 83731378 83731435 -38112421 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1223 377 228 0 6 chr11 83731434 83731597 -38112259 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 1223 1019 253 38 21 chr11 83731597 83731884 -38111972 - B4A SINE B4 0 292 1 4 1223 579 175 17 26 chr11 83734224 83734341 -38109515 + B3 SINE B2 1 116 -100 4 1223 243 0 0 0 chr11 83734449 83734476 -38109380 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1223 393 224 0 0 chr11 83734549 83734634 -38109222 + B3A SINE B2 1 85 -113 4 1223 312 48 0 0 chr11 83734635 83734677 -38109179 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1223 235 316 0 50 chr11 83734677 83734690 -38109166 + RSINE1 SINE B4 84 96 -69 4 1223 369 0 0 0 chr11 83734958 83734999 -38108857 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1223 932 145 0 0 chr11 83734999 83735137 -38108719 - B1_Mus1 SINE Alu -10 138 1 4 1223 564 225 8 0 chr11 83735259 83735379 -38108477 + ID_B1 SINE B4 98 218 -6 4 1223 241 170 56 19 chr11 83735332 83735386 -38108470 + PB1D7 SINE Alu 65 120 0 4 1223 369 347 55 18 chr11 83735534 83735751 -38108105 + MIR SINE MIR 8 232 -30 4 1223 714 126 15 73 chr11 83736717 83736854 -38107002 + B1_Mur1 SINE Alu 21 149 0 4 1223 323 301 49 49 chr11 83736946 83737110 -38106746 + RSINE1 SINE B4 2 165 0 4 1223 195 42 0 0 chr11 83737143 83737167 -38106689 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1223 392 326 0 29 chr11 83737198 83737334 -38106522 + Lx8 LINE L1 7180 7311 -162 4 1223 706 182 186 12 chr11 83737463 83737635 -38106221 + B3 SINE B2 3 204 -12 4 1223 201 74 0 0 chr11 83737635 83737662 -38106194 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1223 311 96 19 0 chr11 83737695 83737747 -38106109 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 4 1223 267 31 0 0 chr11 83739457 83739489 -38104367 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1223 1137 75 6 6 chr11 83739489 83739650 -38104206 - B2_Mm2 SINE B2 -33 162 2 4 1223 345 157 56 0 chr11 83739700 83739789 -38104067 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 4 1223 623 206 33 27 chr11 83740198 83740380 -38103476 - B3A SINE B2 -6 189 8 4 1223 186 311 27 0 chr11 83740612 83740686 -38103170 - MIRb SINE MIR -82 186 111 4 1223 609 223 53 32 chr11 83740693 83740897 -38102959 + B3A SINE B2 2 194 -1 4 1223 265 303 0 54 chr11 83740901 83741000 -38102856 - MIRb SINE MIR -167 101 9 4 1223 783 146 260 12 chr11 83741014 83741187 -38102669 + B3 SINE B2 1 216 0 4 1223 180 250 0 0 chr11 83741217 83741265 -38102591 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 4 1223 329 153 0 14 chr11 83742354 83742427 -38101429 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1223 405 0 0 0 chr11 83742536 83742581 -38101275 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 1223 372 327 16 92 chr11 83742596 83742781 -38101075 - B4A SINE B4 -120 172 2 4 1223 213 0 81 0 chr11 83743158 83743195 -38100661 + (TTG)n Simple_repeat Simple_repeat 2 41 0 4 1223 422 260 38 30 chr11 83743199 83743330 -38100526 - B1F1 SINE Alu -13 136 5 4 1223 241 320 0 0 chr11 83743339 83743414 -38100442 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 4 1223 654 304 77 0 chr11 83743425 83743645 -38100211 - B4A SINE B4 -1 291 55 4 1223 867 307 50 50 chr11 83744027 83744139 -38099717 + MER119 DNA MER1_type 73 181 -402 4 1223 731 167 43 14 chr11 83744139 83744151 -38099705 - B1_Mus2 SINE Alu -2 145 135 4 1223 339 25 0 0 chr11 83744151 83744191 -38099665 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 1223 731 167 43 14 chr11 83744191 83744318 -38099538 - B1_Mus2 SINE Alu -13 134 2 4 1223 867 307 50 50 chr11 83744318 83744627 -38099229 + MER119 DNA MER1_type 182 494 -89 4 1223 373 283 181 0 chr11 83744692 83744830 -38099026 - RSINE1 SINE B4 0 165 3 4 1223 270 247 141 20 chr11 83745516 83745615 -38098241 - L1MC4a LINE L1 -4 8038 7928 4 1223 541 264 64 34 chr11 83745624 83745859 -38097997 - L1MC4a LINE L1 -666 7376 7135 4 1223 646 196 0 0 chr11 83745873 83745985 -38097871 - PB1D10 SINE Alu -5 112 1 4 1223 528 262 0 8 chr11 83746036 83746163 -38097693 - RSINE1 SINE B4 -17 148 23 4 1223 583 267 152 19 chr11 83746201 83746510 -38097346 - L1MC4a LINE L1 -939 7103 6754 4 1223 343 327 91 0 chr11 83746590 83746700 -38097156 + B4A SINE B4 8 127 -165 4 1223 346 151 27 0 chr11 83746731 83746804 -38097052 + G-rich Low_complexity Low_complexity 3 77 0 4 1223 244 266 50 12 chr11 83746814 83746894 -38096962 + B4A SINE B4 183 265 -27 4 1223 309 321 103 40 chr11 83746958 83747211 -38096645 - L1MC4a LINE L1 -1432 6610 6342 4 1223 245 204 19 0 chr11 83747341 83747395 -38096461 - L1MC4a LINE L1 -1724 6158 6104 4 1223 383 182 139 20 chr11 83747397 83747498 -38096358 + PB1 SINE Alu 1 113 -14 4 1223 651 314 57 61 chr11 83747540 83748015 -38095841 - L1MC4a LINE L1 -1778 6104 5632 4 1223 492 271 27 20 chr11 83748173 83748320 -38095536 - B1F SINE Alu 0 149 2 4 1223 287 300 10 20 chr11 83748694 83748796 -38095060 + RMER12 LTR ERVK 750 850 -472 4 1223 201 147 29 0 chr11 83748803 83748837 -38095019 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1223 21 0 0 0 chr11 83749188 83749209 -38094647 + AT_rich Low_complexity Low_complexity 1 21 0 5 1223 284 258 22 33 chr11 83749290 83749382 -38094474 - L1MC4a LINE L1 -551 7331 7241 5 1223 252 122 0 0 chr11 83750174 83750215 -38093641 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 5 1223 1134 55 55 0 chr11 83750217 83750381 -38093475 + B2_Mm2 SINE B2 8 180 -15 5 1223 293 0 0 26 chr11 83750381 83750419 -38093437 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 5 1223 564 234 17 80 chr11 83750650 83750826 -38093030 + B4 SINE B4 2 166 -126 5 1223 398 200 65 22 chr11 83750889 83750981 -38092875 - B1F SINE Alu -51 98 3 5 1223 978 120 0 0 chr11 83751298 83751431 -38092425 + B1_Mur4 SINE Alu 3 135 -15 5 1223 192 40 0 0 chr11 83751432 83751457 -38092399 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 5 1223 599 254 52 99 chr11 83751499 83751595 -38092261 - ID_B1 SINE B4 -1 223 143 5 1223 519 318 6 13 chr11 83751595 83751751 -38092105 - RSINE1 SINE B4 -8 157 3 5 1223 599 254 52 99 chr11 83751751 83751886 -38091970 - ID_B1 SINE B4 -82 142 3 5 1223 562 330 21 64 chr11 83752614 83752847 -38091009 + B4A SINE B4 2 224 -68 5 1223 957 216 14 24 chr11 83752855 83753068 -38090788 + B3 SINE B2 1 211 -5 5 1223 478 296 68 7 chr11 83753090 83753236 -38090620 + RSINE1 SINE B4 3 157 -8 5 1223 30 0 0 0 chr11 83753238 83753268 -38090588 + AT_rich Low_complexity Low_complexity 1 30 0 5 1223 287 107 40 13 chr11 83753393 83753469 -38090387 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1223 371 281 0 0 chr11 83753644 83753726 -38090130 + B1F2 SINE Alu 2 83 -66 5 1223 280 331 13 4 chr11 83754001 83754113 -38089743 - B4 SINE B4 -180 112 1 5 1223 445 296 113 38 chr11 83754346 83754665 -38089191 + L2 LINE L2 2316 2658 -761 5 1224 227 274 16 0 chr11 83755095 83755157 -38088699 + CT-rich Low_complexity Low_complexity 2 64 0 5 1224 255 305 137 47 chr11 83756345 83756579 -38087277 + MIR SINE MIR 8 262 0 5 1224 807 256 65 0 chr11 83757231 83757430 -38086426 + B3 SINE B2 1 212 -4 5 1224 291 333 0 0 chr11 83757456 83757543 -38086313 + ID_B1 SINE B4 80 166 -58 5 1224 873 195 98 42 chr11 83758460 83758653 -38085203 + B3 SINE B2 2 205 -11 5 1224 198 103 0 0 chr11 83758861 83758890 -38084966 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1224 1148 62 28 0 chr11 83758890 83759034 -38084822 - B1_Mus1 SINE Alu 0 148 1 5 1224 387 0 0 0 chr11 83759993 83760036 -38083820 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1224 237 244 0 0 chr11 83760036 83760081 -38083775 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1224 324 267 103 27 chr11 83760329 83760503 -38083353 - L1ME2 LINE L1 0 6164 5978 5 1224 198 71 0 0 chr11 83760503 83760531 -38083325 + (CAGAA)n Simple_repeat Simple_repeat 1 28 0 5 1224 835 150 50 0 chr11 83760757 83760897 -38082959 + B1_Mus1 SINE Alu 1 147 -1 5 1224 182 246 16 0 chr11 83760920 83760981 -38082875 + CT-rich Low_complexity Low_complexity 3 64 0 5 1224 1259 21 7 0 chr11 83761506 83761651 -38082205 + B1_Mus2 SINE Alu 2 147 0 5 1224 379 194 10 10 chr11 83761654 83761753 -38082103 + GA-rich Low_complexity Low_complexity 2 100 0 5 1224 392 218 13 66 chr11 83762326 83762433 -38081423 + B4A SINE B4 79 178 -114 5 1224 1362 81 6 0 chr11 83762433 83762606 -38081250 + B2_Mm1a SINE B2 1 174 -19 5 1224 392 242 14 79 chr11 83762606 83762647 -38081209 + B4A SINE B4 179 216 -76 5 1224 323 262 64 18 chr11 83762650 83762759 -38081097 + PB1D9 SINE Alu 1 114 -6 5 1224 267 54 0 0 chr11 83763308 83763345 -38080511 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1224 829 288 23 5 chr11 83763348 83763564 -38080292 - ID_B1 SINE B4 -4 220 1 5 1224 763 182 41 20 chr11 83763574 83763720 -38080136 - B1_Mur3 SINE Alu 0 149 1 5 1224 314 253 114 0 chr11 83764095 83764174 -38079682 + B1F1 SINE Alu 1 88 -61 5 1224 1710 26 0 0 chr11 83764211 83764404 -38079452 + B2_Mm1a SINE B2 1 193 0 5 1224 649 247 162 4 chr11 83764904 83765144 -38078712 - MTEa LTR MaLR -8 371 94 5 1224 261 83 0 0 chr11 83765871 83765907 -38077949 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 5 1224 207 0 0 0 chr11 83766031 83766054 -38077802 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 5 1224 303 261 54 0 chr11 83766329 83766421 -38077435 + RSINE1 SINE B4 3 99 -66 5 1224 967 228 19 0 chr11 83767126 83767332 -38076524 + B3 SINE B2 3 212 -4 5 1224 1331 58 76 0 chr11 83767670 83767842 -38076014 + B2_Mm1a SINE B2 1 185 -8 5 1224 1313 202 159 51 chr11 83768115 83768485 -38075371 - MTD LTR MaLR -8 411 2 5 1224 512 326 66 55 chr11 83769096 83769385 -38074471 - B4 SINE B4 0 292 1 5 1224 270 304 0 25 chr11 83769801 83769882 -38073974 + B1F SINE Alu 1 79 -70 5 1224 240 258 79 48 chr11 83770583 83770709 -38073147 + MIR SINE MIR 120 249 -13 5 1224 214 115 36 71 chr11 83771169 83771225 -38072631 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1224 516 207 25 33 chr11 83771226 83771346 -38072510 - PB1D9 SINE Alu 0 120 2 5 1224 536 221 39 8 chr11 83771501 83771629 -38072227 + B1_Mus2 SINE Alu 8 139 -8 5 1224 277 327 6 150 chr11 83771680 83771751 -38072105 - B1F SINE Alu -1 148 102 5 1224 1281 14 0 7 chr11 83771751 83771899 -38071957 - B1_Mus1 SINE Alu -1 147 1 5 1224 277 327 6 150 chr11 83771899 83772000 -38071856 - B1F SINE Alu -48 101 1 5 1224 257 309 0 12 chr11 83772017 83772099 -38071757 - Tigger5 DNA MER2_type -2202 204 124 5 1224 542 273 100 4 chr11 83772171 83772410 -38071446 - L1MB3 LINE L1 -59 6124 5863 5 1224 345 100 0 0 chr11 83773646 83773696 -38070160 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1224 22 70 0 0 chr11 83774471 83774514 -38069342 + AT_rich Low_complexity Low_complexity 1 43 0 5 1224 440 232 42 0 chr11 83776409 83776504 -38067352 - PB1D7 SINE Alu -5 115 17 5 1224 234 289 0 32 chr11 83777987 83778141 -38065715 + G-rich Low_complexity Low_complexity 4 152 0 5 1224 273 196 17 70 chr11 83778007 83778122 -38065734 + (CGGG)n Simple_repeat Simple_repeat 3 111 0 5 1224 463 281 8 0 chr11 83779323 83779451 -38064405 + ID_B1 SINE B4 94 222 -2 5 1224 878 128 193 6 chr11 83780166 83780347 -38063509 + URR1A DNA MER1_type 7 221 -5 5 1224 309 263 52 21 chr11 83781170 83781267 -38062589 + RSINE1 SINE B4 8 107 -58 5 1224 333 0 0 0 chr11 83781305 83781342 -38062514 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 1224 273 250 0 0 chr11 83781367 83781435 -38062421 + B3A SINE B2 93 160 -38 5 1224 570 236 76 58 chr11 83781634 83781805 -38062051 - B3 SINE B2 -8 208 35 5 1224 728 234 57 5 chr11 83782582 83782775 -38061081 + B3 SINE B2 2 204 -12 5 1224 305 47 0 23 chr11 83783270 83783314 -38060542 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 1224 24 111 0 0 chr11 83783314 83783422 -38060434 + AT_rich Low_complexity Low_complexity 1 108 0 5 1224 27 29 0 0 chr11 83783436 83783470 -38060386 + AT_rich Low_complexity Low_complexity 1 34 0 5 1224 911 208 16 5 chr11 83783470 83783654 -38060202 + B3 SINE B2 1 186 -30 5 1224 183 80 0 0 chr11 83783662 83783687 -38060169 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1224 1130 276 136 36 chr11 83783698 83784285 -38059571 + L1MB4 LINE L1 5506 6151 -29 5 1224 855 43 21 0 chr11 83784288 83784419 -38059437 + B1_Mus1 SINE Alu 13 149 0 5 1224 222 261 174 0 chr11 83784451 83784520 -38059336 + B1F SINE Alu 2 82 -67 5 1224 28 0 0 0 chr11 83784681 83784709 -38059147 + AT_rich Low_complexity Low_complexity 1 28 0 5 1224 1094 193 0 5 chr11 83784711 83784904 -38058952 + B3 SINE B2 1 192 -24 5 1224 239 239 0 56 chr11 83785127 83785198 -38058658 - ID4_ SINE ID -16 67 1 5 1224 870 137 20 20 chr11 83785338 83785487 -38058369 + B1_Mur3 SINE Alu 1 149 0 5 1224 182 306 128 39 chr11 83785686 83785788 -38058068 + L2b LINE L2 3265 3375 0 5 1224 258 294 10 98 chr11 83785872 83785974 -38057882 + MT2B LTR ERVL 147 239 -362 5 1224 472 215 26 78 chr11 83785901 83786017 -38057839 + PB1D9 SINE Alu 9 118 -2 5 1224 580 196 37 0 chr11 83786029 83786136 -38057720 + PB1D10 SINE Alu 1 111 -6 5 1224 392 130 14 0 chr11 83786136 83786205 -38057651 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 5 1224 261 83 0 0 chr11 83786202 83786238 -38057618 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 5 1224 195 42 0 0 chr11 83786685 83786709 -38057147 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1224 411 125 0 0 chr11 83786970 83787042 -38056814 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1224 3389 33 2 5 chr11 83787044 83787441 -38056415 - MTA_Mm LTR MaLR 0 396 1 5 1224 543 282 6 52 chr11 83787446 83787618 -38056238 - B3A SINE B2 -16 182 19 5 1224 367 298 57 50 chr11 83787685 83787844 -38056012 - RSINE1 SINE B4 -3 162 3 5 1224 669 230 0 0 chr11 83787847 83787986 -38055870 - ID_B1 SINE B4 -2 222 84 5 1224 395 179 147 0 chr11 83788939 83789034 -38054822 + PB1D9 SINE Alu 5 113 -7 5 1224 294 228 82 71 chr11 83789129 83789214 -38054642 + RMER30 DNA MER1_type 116 201 -1 5 1224 183 150 24 24 chr11 83789548 83789589 -38054267 - MIRm SINE MIR -126 150 110 5 1224 246 211 303 0 chr11 83789595 83789671 -38054185 + B1_Mm SINE Alu 4 102 -45 5 1224 449 311 61 23 chr11 83789790 83790004 -38053852 - MLT1F1 LTR MaLR -1 568 347 6 1224 312 345 111 24 chr11 83789991 83790065 -38053791 - MLT1F1 LTR MaLR -316 232 154 6 1224 262 272 85 28 chr11 83790065 83790171 -38053685 + PB1D10 SINE Alu 1 112 -5 6 1224 312 345 111 24 chr11 83790171 83790304 -38053552 - MLT1F1 LTR MaLR -395 153 7 6 1224 182 354 82 20 chr11 83790398 83790496 -38053360 - MIRb SINE MIR -162 106 3 6 1224 218 349 0 16 chr11 83790842 83790906 -38052950 - AluF_3 SINE Alu -102 209 147 6 1224 1594 171 79 92 chr11 83790945 83791017 -38052839 - ORR1D1 LTR MaLR 0 374 306 6 1224 1154 43 28 0 chr11 83791017 83791158 -38052698 + B1_Mm SINE Alu 2 146 -1 6 1224 1594 171 79 92 chr11 83791158 83791464 -38052392 - ORR1D1 LTR MaLR -69 305 1 6 1224 1100 177 19 23 chr11 83791854 83792068 -38051788 - B3 SINE B2 -3 213 1 6 1224 227 317 24 12 chr11 83793135 83793218 -38050638 - PB1D10 SINE Alu -33 84 1 6 1224 2185 111 150 0 chr11 83793890 83794231 -38049625 - ORR1B1 LTR MaLR 0 394 3 6 1224 25 0 0 0 chr11 83794261 83794286 -38049570 + AT_rich Low_complexity Low_complexity 1 25 0 6 1224 521 202 0 0 chr11 83794381 83794475 -38049381 - Lx9 LINE L1 -183 7461 7368 6 1224 344 270 9 43 chr11 83795447 83795563 -38048293 + B1F SINE Alu 1 112 -37 6 1224 315 0 0 0 chr11 83795571 83795606 -38048250 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1224 645 158 152 38 chr11 83796072 83796204 -38047652 + B1_Mus2 SINE Alu 1 147 0 6 1224 477 34 0 0 chr11 83796755 83796814 -38047042 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1224 605 190 93 14 chr11 83796815 83796954 -38046902 - B3A SINE B2 -46 152 3 6 1224 501 254 44 7 chr11 83797160 83797295 -38046561 + B1F SINE Alu 7 146 -3 6 1224 711 174 13 53 chr11 83797883 83798023 -38045833 + B1_Mus2 SINE Alu 1 135 -12 6 1224 405 39 0 0 chr11 83798023 83798074 -38045782 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 1224 711 174 13 53 chr11 83798074 83798085 -38045771 + B1_Mus2 SINE Alu 136 146 -1 6 1224 441 181 24 2 chr11 83798186 83798280 -38045576 + B4A SINE B4 3 97 -195 6 1224 752 218 7 0 chr11 83798348 83798495 -38045361 + B1_Mur3 SINE Alu 1 148 -1 6 1224 303 288 69 44 chr11 83799393 83799553 -38044303 + RSINE1 SINE B4 2 165 0 6 1224 648 176 52 22 chr11 83799576 83799710 -38044146 + ID_B1 SINE B4 82 219 -5 6 1224 285 198 11 0 chr11 83799755 83799829 -38044027 + B1F2 SINE Alu 26 103 -17 6 1224 565 175 35 9 chr11 83801682 83801797 -38042059 + PB1D9 SINE Alu 3 120 0 6 1224 557 229 223 0 chr11 83801958 83802124 -38041732 + B3 SINE B2 1 203 -13 6 1224 1205 48 0 7 chr11 83802159 83802307 -38041549 + B1_Mus2 SINE Alu 1 147 0 6 1224 198 0 0 0 chr11 83802318 83802340 -38041516 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1224 1214 105 44 0 chr11 83803392 83803407 -38040449 - B2_Mm2 SINE B2 -6 189 175 6 1224 207 0 0 0 chr11 83803407 83803430 -38040426 + (TATG)n Simple_repeat Simple_repeat 2 24 0 6 1224 1214 105 44 0 chr11 83803430 83803595 -38040261 - B2_Mm2 SINE B2 -21 174 2 6 1224 311 203 0 17 chr11 83804725 83804785 -38039071 + B4A SINE B4 232 290 -2 6 1224 511 149 19 0 chr11 83804786 83804893 -38038963 + (CA)n Simple_repeat Simple_repeat 2 110 0 6 1224 747 185 37 0 chr11 83804906 83805041 -38038815 + B1_Mur1 SINE Alu 2 141 -8 6 1224 1174 96 11 0 chr11 83805612 83805789 -38038067 - B2_Mm2 SINE B2 -3 192 14 6 1224 313 235 14 42 chr11 83805847 83805918 -38037938 + ID4_ SINE ID 5 73 -10 6 1224 1206 163 247 3 chr11 83806065 83806361 -38037495 + MTC LTR MaLR 32 399 -8 6 1224 5511 151 155 8 chr11 83806364 83807460 -38036396 + MTC-int LTR MaLR 2 1258 0 6 1224 1377 118 95 25 chr11 83807460 83807810 -38036046 + MTC LTR MaLR 1 409 -12 6 1224 682 180 86 0 chr11 83808227 83808355 -38035501 + B1_Mur3 SINE Alu 5 143 -6 6 1224 1204 175 8 55 chr11 83808645 83808881 -38034975 - URR1B DNA MER1_type 0 225 1 6 1224 350 326 0 0 chr11 83809254 83809352 -38034504 + B1F1 SINE Alu 1 98 -51 6 1224 1122 89 14 0 chr11 83810040 83810186 -38033670 + B1_Mus1 SINE Alu 1 148 0 6 1224 288 0 0 0 chr11 83810310 83810342 -38033514 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1224 641 272 12 10 chr11 83810342 83810544 -38033312 - B3A SINE B2 -12 204 7 6 1224 480 237 102 15 chr11 83810553 83810690 -38033166 - B1_Mur1 SINE Alu 0 149 1 6 1224 196 328 0 15 chr11 83810831 83810899 -38032957 - L2a LINE L2 -6 3420 3354 6 1224 198 0 0 0 chr11 83811726 83811748 -38032108 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 6 1224 633 199 43 29 chr11 83811786 83811926 -38031930 - B1_Mur2 SINE Alu -1 148 7 6 1224 21 0 0 0 chr11 83812801 83812822 -38031034 + AT_rich Low_complexity Low_complexity 1 21 0 6 1224 1469 84 0 5 chr11 83813806 83813997 -38029859 - B2_Mm2 SINE B2 -5 190 1 6 1224 369 236 165 28 chr11 83814285 83814394 -38029462 + ID_B1 SINE B4 96 219 -5 6 1224 337 256 265 0 chr11 83814424 83814541 -38029315 - RSINE1 SINE B4 -13 152 5 6 1224 349 282 87 24 chr11 83814893 83815020 -38028836 + B3A SINE B2 50 184 -14 6 1224 751 159 8 0 chr11 83815035 83815161 -38028695 - B1_Mur2 SINE Alu -11 138 12 6 1224 282 193 0 0 chr11 83815189 83815246 -38028610 + GA-rich Low_complexity Low_complexity 4 60 0 6 1224 290 267 35 0 chr11 83815754 83815840 -38028016 - BC1_Mm scRNA scRNA -62 90 2 6 1224 1410 88 16 0 chr11 83815912 83816104 -38027752 - B2_Mm2 SINE B2 0 195 1 6 1224 921 176 60 6 chr11 83816108 83816291 -38027565 - B2_Mm2 SINE B2 -2 193 1 6 1224 448 303 0 0 chr11 83816322 83816431 -38027425 + B1F1 SINE Alu 3 111 -38 6 1224 445 260 10 0 chr11 83816447 83816543 -38027313 - PB1D9 SINE Alu -23 97 1 6 1224 3134 73 0 2 chr11 83816728 83817125 -38026731 - MTA_Mm LTR MaLR 0 396 1 6 1224 524 270 13 26 chr11 83817310 83817462 -38026394 + RSINE1 SINE B4 3 152 -13 6 1224 1081 82 0 20 chr11 83817945 83818095 -38025761 + B1_Mus2 SINE Alu 1 147 0 6 1224 231 200 0 0 chr11 83818448 83818503 -38025353 + (TGAG)n Simple_repeat Simple_repeat 4 58 0 6 1224 1117 228 0 5 chr11 83818985 83819192 -38024664 - B3 SINE B2 -10 206 1 6 1224 212 234 0 0 chr11 83819440 83819487 -38024369 + PB1D7 SINE Alu 14 60 -60 6 1224 312 236 14 0 chr11 83819455 83819527 -38024329 + ID_B1 SINE B4 110 182 -42 6 1224 497 233 6 0 chr11 83820048 83820163 -38023693 + B1F SINE Alu 3 120 0 6 1224 453 280 53 0 chr11 83820631 83820753 -38023103 + B1F2 SINE Alu 9 135 -14 6 1224 1035 99 0 27 chr11 83820777 83820923 -38022933 + B1_Mur4 SINE Alu 1 142 -8 6 1224 301 281 51 72 chr11 83821242 83821380 -38022476 + RSINE1 SINE B4 2 136 -29 6 1224 186 167 0 0 chr11 83821605 83821641 -38022215 + (TTGG)n Simple_repeat Simple_repeat 3 38 0 6 1224 368 258 54 0 chr11 83821654 83821747 -38022109 - PB1D10 SINE Alu -19 98 1 6 1224 285 29 0 0 chr11 83823832 83823866 -38019990 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1224 202 205 0 0 chr11 83824220 83824259 -38019597 + T-rich Low_complexity Low_complexity 1 39 0 6 1224 183 80 0 0 chr11 83824596 83824621 -38019235 + (CTCG)n Simple_repeat Simple_repeat 1 25 0 6 1224 243 0 0 0 chr11 83825676 83825703 -38018153 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1224 261 245 39 96 chr11 83825940 83826044 -38017812 + PB1D10 SINE Alu 1 98 -19 6 1224 456 19 0 0 chr11 83827316 83827369 -38016487 + (TTG)n Simple_repeat Simple_repeat 2 54 0 6 1224 734 95 95 0 chr11 83827370 83827486 -38016370 - B1_Mus1 SINE Alu -12 136 10 6 1224 464 296 40 90 chr11 83827486 83827521 -38016335 - ID_B1 SINE B4 -11 212 68 6 1224 375 313 70 0 chr11 83827521 83827636 -38016220 - PB1 SINE Alu -4 123 1 6 1224 464 296 40 90 chr11 83827636 83827706 -38016150 - ID SINE ID -157 67 3 6 1224 503 232 94 73 chr11 83827926 83828117 -38015739 - B3A SINE B2 -1 197 3 6 1224 1217 110 44 6 chr11 83829407 83829590 -38014266 - B2_Mm2 SINE B2 -4 191 2 6 1224 349 36 18 18 chr11 83830008 83830064 -38013792 + (CAAAAA)n Simple_repeat Simple_repeat 6 61 0 6 1224 432 0 0 0 chr11 83830789 83830837 -38013019 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1224 326 259 0 12 chr11 83830988 83831074 -38012782 + ID_B1 SINE B4 81 165 -59 6 1224 460 188 87 10 chr11 83830998 83831113 -38012743 + PB1 SINE Alu 10 118 -9 6 1224 232 338 26 0 chr11 83831113 83831190 -38012666 + ID4_ SINE ID 2 80 -3 6 1224 246 301 0 14 chr11 83831397 83831471 -38012385 + PB1D7 SINE Alu 42 114 -6 6 1224 201 39 0 0 chr11 83831544 83831570 -38012286 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 6 1224 365 198 235 10 chr11 83831592 83831694 -38012162 - B1_Mus2 SINE Alu -22 125 1 6 1224 311 183 113 0 chr11 83831832 83831903 -38011953 - B1_Mur3 SINE Alu -68 81 3 6 1224 261 0 0 0 chr11 83831919 83831948 -38011908 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1224 1202 43 0 0 chr11 83831948 83832088 -38011768 - B1_Mus1 SINE Alu -8 140 1 6 1224 722 141 117 0 chr11 83832527 83832655 -38011201 - B1_Mur2 SINE Alu -6 143 1 6 1224 470 263 20 0 chr11 83833510 83833609 -38010247 + PB1D10 SINE Alu 10 110 -7 6 1224 728 159 35 21 chr11 83833813 83833954 -38009902 + B1_Mur3 SINE Alu 2 144 -5 6 1224 605 217 20 80 chr11 83834063 83834213 -38009643 - ID_B1 SINE B4 0 224 84 6 1224 558 226 180 43 chr11 83834233 83834262 -38009594 - RSINE1 SINE B4 0 165 142 6 1224 2882 65 7 114 chr11 83834262 83834515 -38009341 - MTB LTR MaLR 0 400 197 6 1224 1179 88 0 0 chr11 83834515 83834662 -38009194 - B1_Mus1 SINE Alu 0 148 2 6 1224 2882 65 7 114 chr11 83834662 83834856 -38009000 - MTB LTR MaLR -204 196 1 6 1224 558 226 180 43 chr11 83834856 83834965 -38008891 - RSINE1 SINE B4 -24 141 8 6 1224 320 258 242 31 chr11 83834993 83835121 -38008735 + B3A SINE B2 1 155 -43 7 1224 627 237 214 0 chr11 83835145 83835291 -38008565 + B3 SINE B2 1 167 -49 7 1224 279 0 0 0 chr11 83835291 83835322 -38008534 + (CATA)n Simple_repeat Simple_repeat 4 34 0 7 1224 627 237 214 0 chr11 83835322 83835348 -38008508 + B3 SINE B2 168 209 -7 7 1224 780 153 53 8 chr11 83835453 83835585 -38008271 + B1_Mur2 SINE Alu 11 148 -1 7 1224 679 233 103 3 chr11 83835583 83835745 -38008111 + B3A SINE B2 27 206 -10 7 1224 898 141 265 0 chr11 83835775 83835945 -38007911 - B3 SINE B2 0 216 2 7 1224 189 0 0 0 chr11 83835977 83835998 -38007858 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1224 807 81 195 0 chr11 83835998 83836121 -38007735 - B1_Mm SINE Alu 0 147 1 7 1224 661 147 94 14 chr11 83837340 83837478 -38006378 - B1_Mur1 SINE Alu 0 149 1 7 1224 706 214 44 20 chr11 83837969 83838162 -38005694 + B3 SINE B2 6 192 -3 7 1224 188 111 0 27 chr11 83838306 83838343 -38005513 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 7 1224 799 244 0 0 chr11 83838824 83838988 -38004868 + B3A SINE B2 1 164 -34 7 1224 412 244 44 11 chr11 83838988 83839079 -38004777 - B1_Mur2 SINE Alu -54 95 2 7 1224 34 24 0 0 chr11 83839093 83839134 -38004722 + AT_rich Low_complexity Low_complexity 1 41 0 7 1224 283 267 20 0 chr11 83839430 83839522 -38004334 - MIR SINE MIR -142 126 31 7 1224 1268 172 263 10 chr11 83839705 83839998 -38003858 + ORR1D1 LTR MaLR 8 374 0 7 1224 252 259 35 12 chr11 83840453 83840539 -38003317 - RMER17C LTR ERVK -136 274 187 7 1224 238 262 138 0 chr11 83840540 83840620 -38003236 - B4 SINE B4 0 292 202 7 1224 281 304 8 57 chr11 83841317 83841439 -38002417 - BC1_Mm scRNA scRNA -34 118 3 7 1224 247 368 0 31 chr11 83841480 83841578 -38002278 + L2 LINE L2 2769 2863 -556 7 1224 334 249 112 138 chr11 83841751 83841947 -38001909 - MTEb LTR MaLR -3 376 186 7 1224 708 190 199 11 chr11 83843490 83843671 -38000185 - B3 SINE B2 0 216 2 7 1224 1444 138 227 36 chr11 83844536 83844844 -37999012 + ORR1B2 LTR MaLR 1 367 0 7 1224 180 214 0 0 chr11 83844965 83845021 -37998835 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 7 1224 249 282 137 90 chr11 83845034 83845311 -37998545 - B4 SINE B4 0 292 3 7 1224 711 289 116 54 chr11 83846247 83846653 -37997203 + MLT1D LTR MaLR 47 477 -28 7 1224 712 232 15 40 chr11 83846620 83846818 -37997038 - B2_Mm2 SINE B2 -1 194 2 7 1224 303 227 30 0 chr11 83846818 83846884 -37996972 + MLT1D LTR MaLR 438 505 0 7 1224 449 351 61 14 chr11 83846949 83847163 -37996693 - MLT1I LTR MaLR -3 408 185 7 1224 1087 163 63 5 chr11 83847174 83847365 -37996491 - B3 SINE B2 0 216 15 7 1224 1634 218 50 15 chr11 83847680 83848076 -37995780 - RCHARR1 DNA MER1_type -8 966 557 7 1224 297 274 10 87 chr11 83848079 83848183 -37995673 + MT2B LTR ERVL 169 264 -337 7 1224 596 213 37 59 chr11 83848090 83848225 -37995631 + B1_Mur1 SINE Alu 17 148 -1 7 1224 1930 262 62 4 chr11 83848238 83848782 -37995074 - RCHARR1 DNA MER1_type -396 578 3 7 1224 264 276 56 128 chr11 83848789 83848831 -37995025 + B3 SINE B2 2 30 -186 7 1224 2050 140 67 9 chr11 83848831 83849176 -37994680 - ORR1C1 LTR MaLR -1 377 13 7 1224 237 108 0 0 chr11 83849176 83849213 -37994643 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1224 1283 20 0 13 chr11 83849229 83849378 -37994478 - B1_Mus2 SINE Alu 0 147 1 7 1224 798 193 71 12 chr11 83849409 83849577 -37994279 + B3 SINE B2 38 215 -1 7 1224 1059 116 7 0 chr11 83849797 83849944 -37993912 - B1_Mus1 SINE Alu 0 148 1 7 1224 738 298 81 19 chr11 83850259 83850519 -37993337 + MER63C DNA AcHobo 238 513 -417 7 1224 378 268 109 27 chr11 83850548 83850601 -37993255 + MER63C DNA AcHobo 582 632 -298 7 1224 702 213 72 48 chr11 83850601 83850808 -37993048 + B3 SINE B2 2 213 -3 7 1224 378 268 109 27 chr11 83850808 83850938 -37992918 + MER63C DNA AcHobo 633 779 -151 7 1224 234 0 0 0 chr11 83850981 83851007 -37992849 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 7 1224 686 176 84 0 chr11 83851012 83851143 -37992713 - B1_Mur1 SINE Alu -5 144 3 7 1224 938 284 61 57 chr11 83851143 83851633 -37992223 - L1ME2 LINE L1 -106 6058 5567 7 1224 198 274 20 0 chr11 83851712 83851763 -37992093 + MIRb SINE MIR 184 235 -33 7 1224 225 367 0 30 chr11 83852511 83852612 -37991244 + L2c LINE L2 3276 3373 -14 7 1224 804 131 64 21 chr11 83853658 83853798 -37990058 - URR1A DNA MER1_type 0 226 81 7 1224 363 277 9 26 chr11 83854709 83854824 -37989032 - PB1D10 SINE Alu 0 117 5 7 1224 1677 21 5 0 chr11 83855403 83855593 -37988263 + B2_Mm1t SINE B2 3 193 0 7 1224 1344 148 9 39 chr11 83855657 83855889 -37987967 - URR1B DNA MER1_type 0 225 1 7 1224 414 0 0 0 chr11 83855910 83855956 -37987900 + (TGG)n Simple_repeat Simple_repeat 2 47 0 7 1224 279 0 0 0 chr11 83855956 83855987 -37987869 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1224 229 68 45 0 chr11 83857748 83857792 -37986064 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 7 1224 1142 58 0 0 chr11 83858171 83858309 -37985547 + B1_Mus2 SINE Alu 2 139 -8 7 1224 315 0 0 0 chr11 83858309 83858344 -37985512 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 1224 344 296 39 94 chr11 83858590 83858717 -37985139 - B4 SINE B4 -92 200 81 7 1224 312 207 35 0 chr11 83858721 83858808 -37985048 - Lx7 LINE L1 0 7696 7607 7 1224 315 210 15 49 chr11 83858808 83859141 -37984715 + CT-rich Low_complexity Low_complexity 1 321 0 7 1224 305 173 27 60 chr11 83859153 83859337 -37984519 + CT-rich Low_complexity Low_complexity 3 180 0 7 1224 296 247 0 63 chr11 83859340 83859435 -37984421 + C-rich Low_complexity Low_complexity 5 93 0 7 1224 1639 216 166 5 chr11 83859435 83859826 -37984030 - Lx6 LINE L1 -61 7399 6946 7 1224 1200 162 88 46 chr11 83859829 83860069 -37983787 - Lx6 LINE L1 -746 6714 6465 7 1224 1571 171 102 30 chr11 83860077 83860439 -37983417 - Lx6 LINE L1 -7044 684 297 7 1224 279 279 102 23 chr11 83860439 83860527 -37983329 - B4A SINE B4 -196 96 2 7 1224 237 281 16 0 chr11 83861280 83861344 -37982512 - Charlie12 DNA MER1_type -2806 67 3 7 1224 674 209 64 25 chr11 83863456 83863613 -37980243 - RSINE1 SINE B4 -1 164 2 7 1224 315 0 0 0 chr11 83863712 83863747 -37980109 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1224 246 208 65 65 chr11 83863768 83863845 -37980011 - ID4_ SINE ID -5 78 2 7 1224 588 217 27 61 chr11 83865325 83865472 -37978384 - B1F1 SINE Alu -7 142 1 7 1224 444 280 164 41 chr11 83865499 83865716 -37978140 - L1M5 LINE L1 -335 5836 5595 7 1224 363 282 0 79 chr11 83865730 83865857 -37977999 + PB1D10 SINE Alu 1 117 0 7 1224 344 288 31 23 chr11 83865972 83866100 -37977756 + RSINE1 SINE B4 2 130 -35 7 1224 438 230 110 110 chr11 83866143 83866343 -37977513 + B3 SINE B2 5 204 -12 7 1224 458 235 147 0 chr11 83866343 83866445 -37977411 + ID_B1 SINE B4 93 209 -15 7 1224 534 31 0 0 chr11 83866816 83866880 -37976976 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1224 192 40 0 0 chr11 83867073 83867098 -37976758 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1224 213 39 0 0 chr11 83868107 83868133 -37975723 + (G)n Simple_repeat Simple_repeat 1 26 0 7 1224 535 209 35 9 chr11 83868142 83868258 -37975598 + PB1D9 SINE Alu 1 119 -1 7 1224 2061 249 240 18 chr11 83868910 83870004 -37973852 + Lx9 LINE L1 6306 7641 -3 7 1224 23 33 0 0 chr11 83870004 83870034 -37973822 + AT_rich Low_complexity Low_complexity 1 30 0 7 1224 1212 68 0 0 chr11 83870169 83870316 -37973540 - B1_Mus2 SINE Alu 0 147 1 7 1224 634 258 15 0 chr11 83870510 83870642 -37973214 - ID_B1 SINE B4 -7 217 84 7 1224 579 189 65 8 chr11 83870924 83871047 -37972809 + B1F SINE Alu 19 148 -1 7 1224 879 132 0 30 chr11 83871299 83871432 -37972424 + B3 SINE B2 1 129 -87 7 1224 499 209 19 19 chr11 83871520 83871627 -37972229 + PB1D7 SINE Alu 2 108 -12 7 1224 3776 106 78 18 chr11 83871741 83872308 -37971548 - MT2B LTR ERVL 0 601 1 7 1224 232 200 123 0 chr11 83872354 83872419 -37971437 - ID4_ SINE ID -10 73 1 7 1224 331 307 66 99 chr11 83872419 83872484 -37971372 - B1F SINE Alu -2 147 80 7 1224 1220 88 32 42 chr11 83872484 83872673 -37971183 + B2_Mm1t SINE B2 1 187 -6 7 1224 331 307 66 99 chr11 83872673 83872759 -37971097 - B1F SINE Alu -70 79 1 7 1224 306 286 141 16 chr11 83872771 83872899 -37970957 - ID_B1 SINE B4 0 224 81 7 1224 1388 78 0 6 chr11 83873077 83873258 -37970598 + B2_Mm2 SINE B2 2 181 -14 7 1224 242 361 73 32 chr11 83873512 83873635 -37970221 + MLT1G LTR MaLR 381 508 -83 7 1224 449 207 108 62 chr11 83873672 83873801 -37970055 + ID_B1 SINE B4 90 224 0 7 1224 260 327 12 55 chr11 83874263 83874428 -37969428 - MLT1A1 LTR MaLR -207 201 44 7 1224 1214 116 11 11 chr11 83874531 83874714 -37969142 - B2_Mm1t SINE B2 -9 184 2 7 1224 442 228 0 0 chr11 83874749 83874841 -37969015 - RSINE1 SINE B4 -72 93 2 7 1224 1494 68 10 5 chr11 83875644 83875836 -37968020 + B2_Mm2 SINE B2 2 194 -1 7 1224 373 306 0 46 chr11 83875881 83876011 -37967845 - B3 SINE B2 -7 209 86 7 1224 477 278 75 0 chr11 83876123 83876256 -37967600 - ID_B1 SINE B4 0 224 82 7 1224 28 0 0 0 chr11 83876265 83876293 -37967563 + AT_rich Low_complexity Low_complexity 1 28 0 7 1224 180 0 0 0 chr11 83876651 83876671 -37967185 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1224 599 235 29 13 chr11 83876677 83876855 -37967001 + B3 SINE B2 1 185 -10 7 1224 634 154 78 42 chr11 83877643 83877785 -37966071 - B1_Mus1 SINE Alu 0 148 2 7 1224 423 174 250 27 chr11 83877789 83877901 -37965955 - B1_Mus1 SINE Alu 0 148 12 7 1224 1006 176 72 31 chr11 83877946 83878140 -37965716 + B3 SINE B2 1 202 -14 7 1224 1699 26 0 0 chr11 83878466 83878658 -37965198 + B2_Mm1a SINE B2 2 193 0 8 1224 1049 177 14 47 chr11 83878669 83878882 -37964974 + B3 SINE B2 1 206 -10 8 1224 258 134 45 0 chr11 83878944 83879011 -37964845 + (TA)n Simple_repeat Simple_repeat 1 70 0 8 1224 831 182 7 0 chr11 83879038 83879186 -37964670 + B1_Mur3 SINE Alu 1 149 0 8 1224 661 145 0 52 chr11 83882226 83882342 -37961514 - PB1D9 SINE Alu -6 114 5 8 1224 197 108 27 0 chr11 83882515 83882552 -37961304 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1224 762 188 194 0 chr11 83883300 83883314 -37960542 - URR1A DNA MER1_type 0 226 211 8 1224 189 0 0 0 chr11 83883314 83883335 -37960521 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1224 762 188 194 0 chr11 83883335 83883506 -37960350 - URR1A DNA MER1_type -16 210 6 8 1224 439 71 13 47 chr11 83883884 83884001 -37959855 - B2_Mm2 SINE B2 0 195 47 8 1224 1311 85 23 0 chr11 83884029 83884205 -37959651 - B2_Mm2 SINE B2 -14 181 2 8 1224 304 299 0 25 chr11 83884251 83884330 -37959526 - ID4_ SINE ID 0 83 7 8 1224 866 212 49 44 chr11 83884352 83884558 -37959298 - B3 SINE B2 -6 210 1 8 1224 332 253 121 0 chr11 83884590 83884681 -37959175 - PB1D9 SINE Alu -16 104 3 8 1224 669 262 11 45 chr11 83885033 83885209 -37958647 + B3A SINE B2 2 171 -27 8 1224 279 75 0 0 chr11 83885274 83885296 -37958560 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1224 1232 54 0 0 chr11 83885296 83885443 -37958413 - B1_Mus2 SINE Alu 0 147 1 8 1224 279 75 0 0 chr11 83885443 83885460 -37958396 + (T)n Simple_repeat Simple_repeat 1 17 0 8 1224 959 197 32 46 chr11 83885836 83886054 -37957802 + B3 SINE B2 2 216 0 8 1225 441 0 0 0 chr11 83886163 83886212 -37957644 + (TTTTC)n Simple_repeat Simple_repeat 4 52 0 8 1225 598 124 132 9 chr11 83886220 83886334 -37957522 - B1_Mur2 SINE Alu -17 132 5 8 1225 391 278 243 9 chr11 83887884 83888113 -37955743 - B4A SINE B4 -3 289 8 8 1225 873 203 72 10 chr11 83888129 83888338 -37955518 - ID_B1 SINE B4 0 224 3 8 1225 346 216 124 29 chr11 83888844 83888949 -37954907 + PB1D9 SINE Alu 1 115 -5 8 1225 695 116 0 9 chr11 83888949 83889062 -37954794 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 8 1225 25 0 0 0 chr11 83889080 83889105 -37954751 + AT_rich Low_complexity Low_complexity 1 25 0 8 1225 1098 54 0 93 chr11 83889107 83889269 -37954587 - B1_Mus2 SINE Alu 0 147 1 8 1225 368 185 43 11 chr11 83889446 83889539 -37954317 - B1F SINE Alu -49 100 5 8 1225 226 215 30 30 chr11 83889479 83889546 -37954310 - B4A SINE B4 -142 150 84 8 1225 243 254 0 0 chr11 83889936 83889991 -37953865 + B1F2 SINE Alu 4 58 -91 8 1225 396 307 40 0 chr11 83890350 83890451 -37953405 + PB1D10 SINE Alu 5 109 -8 8 1225 205 232 124 21 chr11 83890764 83890861 -37952995 + L2b LINE L2 3052 3158 -217 8 1225 1260 75 6 0 chr11 83890872 83891046 -37952810 - B2_Mm1t SINE B2 -5 188 14 8 1225 254 70 0 65 chr11 83891181 83891227 -37952629 + (T)n Simple_repeat Simple_repeat 1 43 0 8 1225 711 53 266 0 chr11 83891229 83891342 -37952514 - B1_Mus1 SINE Alu -4 144 2 8 1225 453 63 0 0 chr11 83891491 83891507 -37952349 + (A)n Simple_repeat Simple_repeat 1 16 0 8 1225 1195 54 0 0 chr11 83891507 83891654 -37952202 + B1_Mm SINE Alu 1 147 0 8 1225 453 63 0 0 chr11 83891654 83891700 -37952156 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1225 290 327 37 28 chr11 83891788 83891895 -37951961 + RSINE1 SINE B4 45 152 -13 8 1225 530 304 14 7 chr11 83893360 83893506 -37950350 + RSINE1 SINE B4 2 148 -17 8 1225 300 267 27 62 chr11 83894307 83894419 -37949437 - ID_B1 SINE B4 -8 216 109 8 1225 256 219 113 75 chr11 83894419 83894431 -37949425 - B1F SINE Alu -1 97 11 8 1225 1177 75 0 0 chr11 83894612 83894758 -37949098 + B1_Mm SINE Alu 1 146 -1 8 1225 365 202 18 92 chr11 83894814 83894923 -37948933 + B1_Mur1 SINE Alu 34 134 -15 8 1225 1281 27 0 0 chr11 83895053 83895200 -37948656 - B1_Mm SINE Alu 0 147 1 8 1225 1508 186 105 26 chr11 83895727 83896070 -37947786 + ORR1D1 LTR MaLR 5 374 0 8 1225 180 0 0 0 chr11 83896581 83896601 -37947255 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1225 243 0 0 0 chr11 83897125 83897152 -37946704 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1225 473 238 104 9 chr11 83897194 83897300 -37946556 + B3A SINE B2 36 151 -47 8 1225 249 206 20 0 chr11 83897416 83897473 -37946383 - B1F1 SINE Alu -50 67 10 8 1225 228 319 14 0 chr11 83897473 83897485 -37946371 - ID_B1 SINE B4 -76 148 79 8 1225 574 148 137 16 chr11 83898311 83898435 -37945421 - B1_Mus1 SINE Alu -2 146 8 8 1225 1287 106 32 0 chr11 83898671 83898859 -37944997 + B2_Mm2 SINE B2 2 195 0 8 1225 498 227 134 0 chr11 83900241 83900360 -37943496 - B1_Mur2 SINE Alu -14 135 1 8 1225 355 105 0 50 chr11 83900840 83900900 -37942956 - B1_Mur4 SINE Alu 0 150 94 8 1225 648 158 0 9 chr11 83900897 83901012 -37942844 + B1_Mur2 SINE Alu 36 149 0 8 1225 813 95 0 0 chr11 83901023 83901139 -37942717 + (GA)n Simple_repeat Simple_repeat 1 116 0 8 1225 827 184 28 0 chr11 83901263 83901404 -37942452 + B1_Mur4 SINE Alu 5 149 -1 8 1225 254 219 55 0 chr11 83901934 83902007 -37941849 + RLTR25A LTR ERVK 11 87 -1016 8 1225 4013 157 155 60 chr11 83902008 83903015 -37940841 + RLTR25A LTR ERVK 1 1103 0 8 1225 25 0 0 0 chr11 83903114 83903139 -37940717 + AT_rich Low_complexity Low_complexity 1 25 0 8 1225 231 232 0 18 chr11 83903258 83903315 -37940541 + L1MC5 LINE L1 7723 7778 -183 8 1225 389 246 89 37 chr11 83903474 83903609 -37940247 + B1F2 SINE Alu 8 149 0 8 1225 377 183 17 126 chr11 83903719 83903838 -37940018 - B4A SINE B4 -1 291 186 8 1225 876 20 0 0 chr11 83903875 83903977 -37939879 + (TC)n Simple_repeat Simple_repeat 1 102 0 8 1225 486 0 0 0 chr11 83903977 83904030 -37939826 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1225 182 37 0 36 chr11 83904617 83904645 -37939211 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 8 1225 309 254 99 0 chr11 83904811 83904882 -37938974 - B3 SINE B2 -17 199 122 8 1225 1092 58 72 0 chr11 83904884 83905022 -37938834 + B1_Mus1 SINE Alu 1 148 0 8 1225 888 114 35 7 chr11 83905582 83905723 -37938133 + B1_Mur3 SINE Alu 5 149 0 8 1225 1022 146 141 5 chr11 83905834 83906033 -37937823 + URR1A DNA MER1_type 1 226 0 8 1225 739 167 53 0 chr11 83906831 83906963 -37936893 + B1_Mur4 SINE Alu 1 139 -11 8 1225 456 248 48 0 chr11 83907242 83907347 -37936509 - PB1D9 SINE Alu -10 110 1 8 1225 684 208 20 34 chr11 83908253 83908402 -37935454 + B1_Mur3 SINE Alu 1 147 -2 8 1225 305 176 0 0 chr11 83908546 83908614 -37935242 + Lx2A1 LINE L1 6939 7006 -2 8 1225 2163 131 98 67 chr11 83909333 83909750 -37934106 + RLTR23 LTR ERV1 1 430 0 8 1225 21 0 0 0 chr11 83909765 83909786 -37934070 + AT_rich Low_complexity Low_complexity 1 21 0 8 1225 192 200 0 0 chr11 83910005 83910045 -37933811 + CT-rich Low_complexity Low_complexity 2 41 0 8 1225 473 238 146 8 chr11 83910063 83910186 -37933670 - B1_Mur1 SINE Alu -5 144 5 8 1225 1252 41 0 0 chr11 83910216 83910362 -37933494 + B1_Mm SINE Alu 2 147 0 8 1225 230 149 40 60 chr11 83911479 83911529 -37932327 + ID_B1 SINE B4 118 166 -58 8 1225 499 221 116 69 chr11 83911540 83911729 -37932127 + B3A SINE B2 1 198 0 8 1225 341 184 25 50 chr11 83911745 83911825 -37932031 - PB1D9 SINE Alu -7 113 36 8 1225 937 272 72 18 chr11 83911911 83912127 -37931729 + B4A SINE B4 1 234 -58 8 1225 3970 89 85 2 chr11 83912127 83912680 -37931176 + MT2B LTR ERVL 1 599 -2 8 1225 937 272 72 18 chr11 83912680 83912740 -37931116 + B4A SINE B4 235 292 0 8 1225 858 164 0 27 chr11 83912766 83912916 -37930940 + B1_Mus2 SINE Alu 2 147 0 8 1225 370 322 0 34 chr11 83913174 83913293 -37930563 + PB1D7 SINE Alu 6 120 0 8 1225 310 67 67 0 chr11 83913300 83913360 -37930496 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 8 1225 785 265 6 0 chr11 83913364 83913526 -37930330 + RSINE1 SINE B4 2 164 -1 8 1225 375 299 20 62 chr11 83913655 83913733 -37930123 + MIR SINE MIR 121 191 -71 8 1225 268 315 54 0 chr11 83913733 83913844 -37930012 + PB1D10 SINE Alu 1 117 0 8 1225 375 299 20 62 chr11 83913844 83913911 -37929945 + MIR SINE MIR 192 260 -2 8 1225 259 304 87 26 chr11 83914155 83914270 -37929586 + B1F2 SINE Alu 6 127 -22 8 1225 228 309 44 0 chr11 83915413 83915481 -37928375 + ID_B1 SINE B4 93 163 -61 8 1225 234 0 0 0 chr11 83915483 83915509 -37928347 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1225 1132 82 7 0 chr11 83915542 83915689 -37928167 + B1_Mus1 SINE Alu 1 148 0 8 1225 777 255 140 38 chr11 83915778 83916043 -37927813 + B4 SINE B4 1 292 0 8 1225 233 176 188 14 chr11 83916365 83916434 -37927422 - ID2 SINE ID -1 82 2 8 1225 205 362 14 0 chr11 83916436 83916505 -37927351 + L2c LINE L2 3278 3347 -40 8 1225 242 267 0 0 chr11 83917277 83917337 -37926519 - B1F SINE Alu -1 148 89 8 1225 348 276 29 48 chr11 83917878 83917981 -37925875 + ID_B1 SINE B4 86 186 -38 8 1225 370 163 217 0 chr11 83918190 83918282 -37925574 - B1_Mus1 SINE Alu -5 143 32 8 1225 236 243 40 67 chr11 83918327 83918402 -37925454 - PB1 SINE Alu -49 78 6 9 1225 343 241 12 37 chr11 83918511 83918593 -37925263 - RSINE1 SINE B4 -83 82 3 9 1225 226 359 39 58 chr11 83918875 83918912 -37924944 + MIRb SINE MIR 42 78 -190 9 1225 246 32 0 0 chr11 83918912 83918943 -37924913 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1225 226 359 39 58 chr11 83918943 83919059 -37924797 + MIRb SINE MIR 79 191 -77 9 1225 641 199 14 42 chr11 83920102 83920244 -37923612 + ID_B1 SINE B4 77 214 -10 9 1225 235 306 61 0 chr11 83920312 83920410 -37923446 + MT2B LTR ERVL 156 259 -342 9 1225 338 261 27 10 chr11 83920356 83920453 -37923403 + B1_Mur1 SINE Alu 46 148 -1 9 1225 610 241 21 7 chr11 83920455 83920597 -37923259 + B1_Mur3 SINE Alu 3 146 -3 9 1225 296 246 0 0 chr11 83920604 83920661 -37923195 + RSINE1 SINE B4 76 132 -33 9 1225 1570 173 23 73 chr11 83920721 83921064 -37922792 + ORR1A3 LTR MaLR 1 326 0 9 1225 492 189 23 198 chr11 83921277 83921365 -37922491 + B1_Mur2 SINE Alu 1 65 -84 9 1225 1119 84 0 0 chr11 83921365 83921507 -37922349 - B1_Mus2 SINE Alu -5 142 1 9 1225 492 189 23 198 chr11 83921507 83921590 -37922266 + B1_Mur2 SINE Alu 66 142 -7 9 1225 305 254 0 0 chr11 83922058 83922129 -37921727 - ID4 SINE ID -6 77 7 9 1225 768 284 28 5 chr11 83922587 83922799 -37921057 + B4A SINE B4 8 224 -68 9 1225 207 105 0 26 chr11 83922813 83922852 -37921004 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 9 1225 253 194 269 0 chr11 83923615 83923708 -37920148 + PB1D7 SINE Alu 3 120 0 9 1225 391 268 9 35 chr11 83923657 83923773 -37920083 + B4A SINE B4 174 286 -6 9 1225 683 251 55 0 chr11 83924040 83924203 -37919653 + B3A SINE B2 24 195 -3 9 1225 897 161 0 34 chr11 83924235 83924383 -37919473 + B1_Mur3 SINE Alu 1 143 -6 9 1225 415 261 90 30 chr11 83924484 83924618 -37919238 + B1F2 SINE Alu 6 147 -2 9 1225 282 342 43 9 chr11 83924635 83924750 -37919106 + B1F1 SINE Alu 5 123 -26 9 1225 239 372 22 7 chr11 83924750 83924769 -37919087 + ID_B1 SINE B4 86 221 -3 9 1225 620 230 119 17 chr11 83924800 83924977 -37918879 + B3A SINE B2 1 195 -3 9 1225 1358 80 27 0 chr11 83924979 83925166 -37918690 + B2_Mm1t SINE B2 2 193 0 9 1225 533 183 38 0 chr11 83925207 83925312 -37918544 + PB1D7 SINE Alu 15 220 -91 9 1225 249 303 187 25 chr11 83925356 83925559 -37918297 + L1MC LINE L1 5484 5719 -614 9 1225 1002 193 43 38 chr11 83925683 83925893 -37917963 + B3 SINE B2 6 216 0 9 1225 279 276 8 65 chr11 83926187 83926311 -37917545 + MLT1H1 LTR MaLR 423 539 -30 9 1225 291 190 0 0 chr11 83926789 83926847 -37917009 + CT-rich Low_complexity Low_complexity 3 60 0 9 1225 182 286 0 0 chr11 83926903 83926945 -37916911 - MER5A DNA MER1_type -105 84 43 9 1225 23 0 0 0 chr11 83927559 83927582 -37916274 + AT_rich Low_complexity Low_complexity 1 23 0 9 1225 493 204 21 0 chr11 83927775 83927868 -37915988 + ID_B1 SINE B4 122 216 -8 9 1225 577 235 72 6 chr11 83927892 83928059 -37915797 + B3A SINE B2 3 180 -18 9 1225 30 27 0 0 chr11 83928076 83928113 -37915743 + AT_rich Low_complexity Low_complexity 1 37 0 9 1225 1201 55 0 0 chr11 83928116 83928262 -37915594 - B1_Mus2 SINE Alu 0 147 2 9 1225 551 300 28 56 chr11 83928456 83928636 -37915220 - ID_B1 SINE B4 -2 222 48 9 1225 591 99 79 0 chr11 83928633 83928734 -37915122 - B1_Mur1 SINE Alu -40 109 1 9 1225 938 295 75 92 chr11 83928880 83928991 -37914865 + MLT1E2 LTR MaLR 81 186 -441 9 1225 744 187 192 6 chr11 83928991 83929168 -37914688 + B3 SINE B2 1 210 -6 9 1225 938 295 75 92 chr11 83929168 83929612 -37914244 + MLT1E2 LTR MaLR 187 627 0 9 1225 259 324 0 0 chr11 83929728 83929799 -37914057 - ID4 SINE ID -6 77 7 9 1225 931 162 14 82 chr11 83929818 83930026 -37913830 - B2_Mm2 SINE B2 0 195 2 9 1225 249 235 55 66 chr11 83930114 83930205 -37913651 - MamRep605 Unknown Unknown -637 239 150 9 1225 25 31 0 0 chr11 83930221 83930253 -37913603 + AT_rich Low_complexity Low_complexity 1 32 0 9 1225 346 108 15 15 chr11 83930257 83930323 -37913533 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 1225 479 282 33 94 chr11 83930358 83930538 -37913318 - B3A SINE B2 -28 170 2 9 1225 1076 64 36 0 chr11 83930596 83930736 -37913120 + B1_Mus2 SINE Alu 1 145 -2 9 1225 216 0 0 0 chr11 83930736 83930760 -37913096 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1225 1451 211 48 12 chr11 83930779 83931115 -37912741 + ORR1D1 LTR MaLR 13 360 -14 9 1225 237 315 141 0 chr11 83931189 83931281 -37912575 - PB1D7 SINE Alu -15 105 1 9 1225 720 204 31 88 chr11 83931355 83931581 -37912275 - B3 SINE B2 0 216 4 9 1225 321 204 408 32 chr11 83931867 83932024 -37911832 + ID_B1 SINE B4 2 217 -7 9 1225 725 130 89 36 chr11 83932035 83932203 -37911653 + B2_Mm2 SINE B2 15 191 -4 9 1225 750 192 20 27 chr11 83932207 83932357 -37911499 + B1_Mur2 SINE Alu 1 149 0 9 1225 234 0 0 0 chr11 83933017 83933043 -37910813 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 1225 232 320 13 0 chr11 83933092 83933170 -37910686 - PB1D10 SINE Alu -30 87 9 9 1225 1135 82 0 0 chr11 83933209 83933356 -37910500 - B1_Mm SINE Alu 0 147 1 9 1225 31 0 0 0 chr11 83933509 83933540 -37910316 + AT_rich Low_complexity Low_complexity 1 31 0 9 1225 596 158 34 42 chr11 83933540 83933659 -37910197 - B1_Mus2 SINE Alu -3 144 27 9 1225 876 257 16 66 chr11 83933792 83934034 -37909822 - B4A SINE B4 -39 253 24 9 1225 349 302 47 0 chr11 83934097 83934226 -37909630 + MIR SINE MIR 95 229 -33 9 1225 264 261 0 0 chr11 83935496 83935561 -37908295 - ID_B1 SINE B4 -68 156 92 9 1225 231 236 0 18 chr11 83935511 83935567 -37908289 - B1_Mur4 SINE Alu -89 61 7 9 1225 383 216 39 49 chr11 83935617 83935719 -37908137 - B3A SINE B2 -1 197 97 9 1225 1155 58 0 0 chr11 83935757 83935896 -37907960 + B1_Mus1 SINE Alu 4 142 -6 9 1225 210 37 0 0 chr11 83935898 83935925 -37907931 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1225 210 238 76 45 chr11 83936013 83936079 -37907777 - PB1 SINE Alu -3 124 57 9 1225 21 0 0 0 chr11 83936121 83936142 -37907714 + AT_rich Low_complexity Low_complexity 1 21 0 9 1225 631 194 27 0 chr11 83936142 83936278 -37907578 - RSINE1 SINE B4 0 165 21 9 1225 344 326 46 104 chr11 83936339 83936599 -37907257 + MER20B DNA MER1_type 29 273 -510 9 1225 322 188 34 101 chr11 83936611 83936700 -37907156 - ID4 SINE ID 0 83 1 9 1225 498 252 19 0 chr11 83936710 83936817 -37907039 + PB1D9 SINE Alu 7 115 -5 9 1225 231 330 57 0 chr11 83936823 83936911 -37906945 + MER20B DNA MER1_type 300 392 -391 9 1225 405 203 0 2 chr11 83937091 83937177 -37906679 - B1F1 SINE Alu -27 93 9 9 1225 234 0 0 0 chr11 83937463 83937489 -37906367 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1225 696 164 78 0 chr11 83937799 83937927 -37905929 + B1_Mus1 SINE Alu 11 148 0 9 1225 424 287 205 7 chr11 83937973 83938124 -37905732 + B3A SINE B2 2 182 -16 9 1225 888 175 141 5 chr11 83938197 83938381 -37905475 + B3 SINE B2 1 209 -7 9 1225 23 33 0 0 chr11 83938381 83938411 -37905445 + AT_rich Low_complexity Low_complexity 1 30 0 9 1225 215 301 0 14 chr11 83938437 83938511 -37905345 + RSINE1 SINE B4 8 80 -85 9 1225 522 285 89 18 chr11 83938445 83938642 -37905214 + B3 SINE B2 14 204 -12 9 1225 774 279 30 0 chr11 83938743 83938940 -37904916 - B3 SINE B2 -10 206 4 9 1225 374 238 0 0 chr11 83939068 83939148 -37904708 + B1F1 SINE Alu 70 149 0 9 1225 714 201 21 7 chr11 83939575 83939720 -37904136 - B1_Mur1 SINE Alu -1 148 2 9 1225 555 201 41 0 chr11 83939748 83939880 -37903976 + B1_Mus1 SINE Alu 1 144 -6 9 1225 473 183 129 9 chr11 83940139 83940255 -37903601 + ID_B1 SINE B4 91 220 -4 9 1225 640 202 70 0 chr11 83940757 83940886 -37902970 + B1_Mur2 SINE Alu 6 143 -6 9 1225 263 262 196 53 chr11 83940994 83941007 -37902849 + ID_B1 SINE B4 73 140 -84 9 1225 419 165 224 37 chr11 83941007 83941114 -37902742 + B1_Mus2 SINE Alu 8 134 -13 9 1225 263 262 196 53 chr11 83941114 83941127 -37902729 + ID_B1 SINE B4 141 224 0 9 1225 910 66 123 0 chr11 83941203 83941325 -37902531 + B1_Mus1 SINE Alu 1 137 -11 9 1225 1417 88 0 15 chr11 83941325 83941520 -37902336 + B2_Mm2 SINE B2 2 194 -1 9 1225 1261 97 38 0 chr11 83941602 83941788 -37902068 - B2_Mm1a SINE B2 0 193 1 9 1225 1352 82 33 0 chr11 83941794 83941977 -37901879 - B2_Mm2 SINE B2 -4 191 3 9 1225 392 261 193 0 chr11 83942142 83942318 -37901538 + ID_B1 SINE B4 13 222 -2 9 1225 229 289 22 28 chr11 83942935 83943113 -37900743 + (CCGCG)n Simple_repeat Simple_repeat 4 180 0 9 1225 315 285 221 39 chr11 83943684 83943892 -37899964 - MIR SINE MIR -12 250 5 9 1225 472 228 42 50 chr11 83944034 83944154 -37899702 + PB1D7 SINE Alu 1 119 -1 9 1225 185 333 0 0 chr11 83944606 83944687 -37899169 - L2a LINE L2 -372 3054 2974 9 1225 238 236 140 43 chr11 83944826 83944919 -37898937 + PB1D10 SINE Alu 10 111 -6 9 1225 643 221 21 14 chr11 83945169 83945311 -37898545 + B4A SINE B4 88 230 -62 9 1225 753 209 165 4 chr11 83945311 83945547 -37898309 + B4A SINE B4 1 274 -18 9 1225 441 0 0 0 chr11 83945595 83945644 -37898212 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1225 474 263 7 49 chr11 83946008 83946152 -37897704 + B1F2 SINE Alu 12 149 0 9 1225 1001 177 93 5 chr11 83946221 83946414 -37897442 + B3 SINE B2 1 210 -6 1 1225 248 274 54 39 chr11 83946463 83946592 -37897264 + MER94 DNA AcHobo 2 132 -2 1 1225 189 0 0 0 chr11 83947010 83947031 -37896825 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1225 28 0 0 0 chr11 83947037 83947065 -37896791 + AT_rich Low_complexity Low_complexity 1 28 0 1 1225 1278 27 0 0 chr11 83947065 83947213 -37896643 - B1_Mus1 SINE Alu 0 148 1 1 1225 928 156 7 20 chr11 83947215 83947365 -37896491 - B1_Mur3 SINE Alu -1 148 1 1 1225 469 214 0 0 chr11 83947413 83947497 -37896359 - B3 SINE B2 -86 130 47 1 1225 908 110 0 46 chr11 83947527 83947680 -37896176 - B2_Mm1t SINE B2 0 193 48 1 1225 1021 149 49 44 chr11 83947910 83948093 -37895763 + B2_Mm2 SINE B2 1 184 -11 1 1225 617 182 0 6 chr11 83948408 83948530 -37895326 - B1_Mur3 SINE Alu 0 120 4 1 1225 219 69 0 0 chr11 83948535 83948564 -37895292 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1225 321 87 65 11 chr11 83948559 83948652 -37895204 + (TTTG)n Simple_repeat Simple_repeat 2 99 0 1 1225 1209 62 0 0 chr11 83948653 83948799 -37895057 - B1_Mus2 SINE Alu 0 147 2 1 1225 1208 54 0 13 chr11 83949272 83949421 -37894435 + B1_Mus2 SINE Alu 1 147 0 1 1225 390 268 51 43 chr11 83949471 83949588 -37894268 + PB1D7 SINE Alu 1 118 -2 1 1225 646 208 132 46 chr11 83949764 83949961 -37893895 + B3 SINE B2 3 216 0 1 1225 256 19 94 0 chr11 83950458 83950511 -37893345 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1225 270 81 0 0 chr11 83950632 83950669 -37893187 + (TTCTCC)n Simple_repeat Simple_repeat 1 37 0 1 1225 1186 84 0 0 chr11 83950671 83950837 -37893019 - B2_Mm2 SINE B2 -26 169 4 1 1225 232 350 39 62 chr11 83950954 83951082 -37892774 + B4 SINE B4 73 197 -95 1 1225 559 208 22 0 chr11 83950990 83951111 -37892745 + B1_Mur2 SINE Alu 12 138 -11 1 1225 832 179 7 7 chr11 83951142 83951283 -37892573 + B1_Mur3 SINE Alu 1 141 -8 1 1225 681 76 0 0 chr11 83951283 83951375 -37892481 + (GGAGA)n Simple_repeat Simple_repeat 3 94 0 1 1225 639 0 0 0 chr11 83951375 83951445 -37892411 + (GGAAA)n Simple_repeat Simple_repeat 1 71 0 1 1225 272 113 18 54 chr11 83952170 83952226 -37891630 - B1_Mur1 SINE Alu 0 149 96 1 1225 617 241 53 0 chr11 83952519 83952652 -37891204 + RSINE1 SINE B4 9 148 -17 1 1225 660 262 7 0 chr11 83952716 83952857 -37890999 + ID_B1 SINE B4 78 219 -5 1 1225 1024 235 97 26 chr11 83952994 83953343 -37890513 + L1MA5 LINE L1 5927 6300 0 1 1225 750 123 20 92 chr11 83953349 83953491 -37890365 + B1_Mus1 SINE Alu 8 139 -9 1 1225 581 0 14 0 chr11 83953491 83953560 -37890296 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1 1225 495 202 0 83 chr11 83953569 83953677 -37890179 + PB1D9 SINE Alu 15 113 -7 1 1225 323 247 13 0 chr11 83953849 83953926 -37889930 - ID_B1 SINE B4 -2 222 145 1 1225 274 298 58 0 chr11 83953926 83954030 -37889826 + ID_B1 SINE B4 115 224 0 1 1225 824 226 27 0 chr11 83954075 83954261 -37889595 + B3 SINE B2 20 210 -6 1 1225 1219 85 0 6 chr11 83954292 83954469 -37889387 + B2_Mm2 SINE B2 2 177 -18 1 1225 481 256 31 55 chr11 83954498 83954626 -37889230 - RSINE1 SINE B4 -29 136 12 1 1225 423 0 0 0 chr11 83954641 83954688 -37889168 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1225 235 184 102 0 chr11 83954698 83954747 -37889109 + B1_Mus2 SINE Alu 3 56 -91 1 1225 559 190 26 0 chr11 83954798 83954914 -37888942 - PB1D9 SINE Alu 0 120 2 1 1225 279 0 0 0 chr11 83954944 83954975 -37888881 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1225 485 258 0 92 chr11 83955648 83955789 -37888067 + B1F SINE Alu 19 146 -3 1 1225 373 208 12 38 chr11 83955815 83955895 -37887961 + B3A SINE B2 1 78 -120 1 1225 198 71 0 0 chr11 83955929 83955957 -37887899 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1225 1192 61 0 0 chr11 83956002 83956149 -37887707 + B1_Mm SINE Alu 1 147 0 1 1225 180 0 0 0 chr11 83956149 83956169 -37887687 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1225 496 217 60 30 chr11 83956234 83956357 -37887499 + B1F SINE Alu 13 141 -8 1 1225 351 0 0 0 chr11 83956357 83956396 -37887460 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1 1225 302 236 125 0 chr11 83956467 83956539 -37887317 + ID_B1 SINE B4 91 171 -53 1 1225 269 250 136 0 chr11 83956539 83956555 -37887301 + PB1D10 SINE Alu 10 109 -8 1 1225 1034 254 59 15 chr11 83956574 83956846 -37887010 + B4 SINE B4 7 290 -2 1 1225 871 135 13 0 chr11 83956934 83957090 -37886766 + (GA)n Simple_repeat Simple_repeat 1 158 0 1 1225 605 14 0 0 chr11 83957090 83957159 -37886697 + (GAA)n Simple_repeat Simple_repeat 3 71 0 1 1225 366 91 0 0 chr11 83957159 83957214 -37886642 + (GGGGA)n Simple_repeat Simple_repeat 3 57 0 1 1225 522 184 10 20 chr11 83957215 83957315 -37886541 + B1_Mur1 SINE Alu 42 140 -9 1 1225 613 229 35 0 chr11 83957635 83957779 -37886077 - B1F SINE Alu 0 149 1 1 1225 1481 42 10 50 chr11 83957829 83958028 -37885828 + B2_Mm2 SINE B2 2 192 -3 1 1225 351 298 11 0 chr11 83958030 83958124 -37885732 + B3 SINE B2 1 95 -121 1 1225 553 284 5 87 chr11 83958260 83958445 -37885411 - B3A SINE B2 -1 197 28 1 1225 562 236 21 21 chr11 83958691 83958834 -37885022 - B1F SINE Alu -6 143 1 1 1225 446 173 164 0 chr11 83958990 83959100 -37884756 + B1F SINE Alu 1 128 -21 1 1225 360 346 15 23 chr11 83959123 83959256 -37884600 + ID_B1 SINE B4 78 209 -15 1 1225 281 277 26 18 chr11 83959510 83959624 -37884232 + L1ME4a LINE L1 6006 6120 -4 1 1225 251 303 0 62 chr11 83960552 83960633 -37883223 + ID_B1 SINE B4 84 159 -65 1 1225 204 125 0 0 chr11 83960638 83960670 -37883186 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1225 879 122 0 28 chr11 83960786 83960929 -37882927 - B1_Mus2 SINE Alu 0 147 9 1 1225 486 148 79 53 chr11 83961062 83961176 -37882680 + ID_B1 SINE B4 107 223 -1 1 1225 253 257 0 28 chr11 83961189 83961261 -37882595 + PB1D10 SINE Alu 1 70 -47 1 1225 1176 68 0 0 chr11 83961407 83961553 -37882303 + B1_Mm SINE Alu 2 147 0 1 1225 294 29 0 0 chr11 83961553 83961588 -37882268 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1225 494 203 58 115 chr11 83962586 83962649 -37881207 - ID_B1 SINE B4 -9 215 156 1 1225 210 37 0 0 chr11 83962649 83962676 -37881180 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1225 1164 62 14 0 chr11 83962680 83962825 -37881031 - B1_Mm SINE Alu 0 147 1 1 1225 494 203 58 115 chr11 83962825 83962895 -37880961 - ID_B1 SINE B4 -69 155 85 1 1225 324 159 130 0 chr11 83962929 83962998 -37880858 + B3 SINE B2 127 204 -12 1 1225 1504 63 127 60 chr11 83963131 83963383 -37880473 - L1Md_F2 LINE L1 0 6582 6314 1 1225 351 0 0 0 chr11 83963436 83963475 -37880381 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1225 279 0 0 0 chr11 83963475 83963505 -37880351 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1225 546 162 0 0 chr11 83963514 83963650 -37880206 + (TG)n Simple_repeat Simple_repeat 2 137 0 1 1225 804 162 28 7 chr11 83964193 83964336 -37879520 + B1_Mus2 SINE Alu 1 146 -1 1 1225 243 81 31 46 chr11 83964336 83964401 -37879455 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 1225 451 206 253 23 chr11 83964501 83964675 -37879181 - B3 SINE B2 0 216 3 1 1225 1180 57 0 0 chr11 83964813 83964953 -37878903 + B1_Mus1 SINE Alu 1 140 -8 1 1225 441 0 0 0 chr11 83964953 83965002 -37878854 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1225 479 187 0 9 chr11 83965186 83965294 -37878562 + CT-rich Low_complexity Low_complexity 3 109 0 1 1225 377 268 25 51 chr11 83965300 83965418 -37878438 - ID_B1 SINE B4 0 224 110 1 1225 420 143 14 0 chr11 83965441 83965511 -37878345 - B1_Mur2 SINE Alu -37 112 42 1 1225 588 170 0 59 chr11 83965520 83965827 -37878029 + (TCTCTG)n Simple_repeat Simple_repeat 1 288 0 1 1225 465 236 0 0 chr11 83965802 83965976 -37877880 + CT-rich Low_complexity Low_complexity 2 175 0 1 1225 206 114 0 54 chr11 83965978 83966015 -37877841 + (TCTCTG)n Simple_repeat Simple_repeat 1 35 0 1 1225 281 272 74 0 chr11 83966422 83966503 -37877353 - B1_Mur1 SINE Alu -36 113 27 1 1225 788 222 194 0 chr11 83966576 83966756 -37877100 + B3 SINE B2 2 216 0 1 1225 453 116 0 0 chr11 83966760 83966829 -37877027 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1225 632 98 101 59 chr11 83966841 83966960 -37876896 + B1_Mus2 SINE Alu 9 132 -15 1 1225 196 345 0 17 chr11 83967039 83967132 -37876724 - MIRm SINE MIR -98 170 80 1 1225 1438 55 27 5 chr11 83967678 83967862 -37875994 + B2_Mm2 SINE B2 3 190 -5 1 1225 231 156 0 62 chr11 83967867 83967915 -37875941 + B3 SINE B2 2 46 -170 1 1225 1192 66 6 6 chr11 83967923 83968091 -37875765 - B2_Mm2 SINE B2 -27 168 1 1 1225 447 202 79 0 chr11 83968092 83968181 -37875675 + B3 SINE B2 32 127 -89 1 1225 303 170 0 0 chr11 83968320 83968367 -37875489 + PB1D9 SINE Alu 10 56 -64 1 1225 440 300 10 62 chr11 83968832 83969024 -37874832 - B3A SINE B2 -16 182 1 1 1225 333 0 0 0 chr11 83969126 83969163 -37874693 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1225 891 89 0 0 chr11 83969176 83969300 -37874556 - B2_Mm2 SINE B2 -70 125 2 1 1225 1019 78 0 14 chr11 83969315 83969458 -37874398 - B1_Mur4 SINE Alu -4 146 6 1 1225 1184 43 0 0 chr11 83969877 83970016 -37873840 - B1_Mus2 SINE Alu -7 140 2 1 1225 558 234 20 27 chr11 83970552 83970701 -37873155 + B1F1 SINE Alu 2 149 0 1 1225 506 190 207 41 chr11 83970752 83970873 -37872983 + B1_Mur2 SINE Alu 5 145 -4 1 1225 197 33 33 0 chr11 83970875 83970905 -37872951 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1225 671 191 0 135 chr11 83970918 83971025 -37872831 + B1F SINE Alu 1 103 -46 1 1225 1455 78 5 10 chr11 83971025 83971218 -37872638 - B2_Mm1a SINE B2 -1 192 1 1 1225 671 191 0 135 chr11 83971218 83971273 -37872583 + B1F SINE Alu 104 141 -8 1 1225 603 217 95 53 chr11 83971283 83971439 -37872417 + B3A SINE B2 1 167 -31 1 1225 474 18 0 0 chr11 83971439 83971494 -37872362 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1225 603 217 95 53 chr11 83971494 83971527 -37872329 + B3A SINE B2 168 198 0 1 1225 532 223 71 0 chr11 83971924 83972036 -37871820 - PB1D7 SINE Alu 0 120 1 1 1225 227 191 21 0 chr11 83972497 83972544 -37871312 - RSINE1 SINE B4 -36 129 82 1 1225 909 114 8 0 chr11 83972561 83972692 -37871164 - B1_Mus1 SINE Alu -12 136 5 1 1225 228 344 48 32 chr11 83972748 83972874 -37870982 + MIRc SINE MIR 92 219 -49 1 1225 1055 96 0 27 chr11 83973121 83973271 -37870585 + B1_Mus1 SINE Alu 3 148 0 1 1225 539 223 35 0 chr11 83973289 83973413 -37870443 + B1_Mm SINE Alu 19 146 -1 1 1225 402 246 0 66 chr11 83973432 83973554 -37870302 + PB1D10 SINE Alu 4 117 0 1 1225 754 117 0 0 chr11 83973604 83973715 -37870141 + B1_Mus1 SINE Alu 30 140 -8 1 1225 248 248 67 38 chr11 83974268 83974373 -37869483 - Tigger16a DNA Tigger -29 904 797 1 1225 403 88 159 5 chr11 83974812 83974921 -37868935 - B2_Mm2 SINE B2 -6 189 46 1 1225 1134 98 6 0 chr11 83974967 83975131 -37868725 - B2_Mm1t SINE B2 -26 167 3 1 1225 228 139 0 0 chr11 83975203 83975239 -37868617 - B4A SINE B4 -174 118 83 1 1225 1593 26 11 11 chr11 83975245 83975436 -37868420 - B2_Mm1a SINE B2 -1 192 2 1 1225 1417 62 17 6 chr11 83975747 83975926 -37867930 + B2_Mm2 SINE B2 1 181 -14 1 1225 780 42 0 0 chr11 83975928 83976024 -37867832 + (GAA)n Simple_repeat Simple_repeat 2 97 0 1 1225 333 47 0 0 chr11 83976024 83976066 -37867790 + (AGGGGG)n Simple_repeat Simple_repeat 3 45 0 1 1225 502 260 16 0 chr11 83976484 83976611 -37867245 + ID_B1 SINE B4 90 218 -6 1 1225 22 35 0 0 chr11 83976782 83976811 -37867045 + AT_rich Low_complexity Low_complexity 1 29 0 1 1225 511 214 19 5 chr11 83976812 83976931 -37866925 - B1_Mur2 SINE Alu -2 118 2 1 1225 643 239 7 14 chr11 83976965 83977105 -37866751 + B1_Mur1 SINE Alu 6 144 -5 1 1225 1254 34 0 0 chr11 83977116 83977262 -37866594 + B1_Mm SINE Alu 2 147 0 1 1225 380 138 15 15 chr11 83977296 83977362 -37866494 + B1_Mur1 SINE Alu 63 128 -21 1 1225 300 161 0 0 chr11 83977370 83977451 -37866405 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1225 375 244 167 38 chr11 83977518 83977650 -37866206 + RSINE1 SINE B4 2 150 -15 1 1225 360 0 0 0 chr11 83977652 83977692 -37866164 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1225 980 153 21 37 chr11 83978499 83978689 -37865167 + B2_Mm2 SINE B2 1 187 -8 1 1225 798 149 52 7 chr11 83979168 83979303 -37864553 - B1_Mus1 SINE Alu -7 141 1 1 1225 691 209 15 8 chr11 83979465 83979595 -37864261 - B1_Mur1 SINE Alu 0 149 19 1 1225 932 228 5 28 chr11 83979598 83979815 -37864041 + B3 SINE B2 5 216 0 1 1225 1202 68 0 0 chr11 83979824 83979971 -37863885 + B1_Mus2 SINE Alu 1 147 0 1 1225 239 113 19 0 chr11 83979971 83980024 -37863832 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1225 252 0 0 0 chr11 83980067 83980095 -37863761 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1225 336 253 0 0 chr11 83980100 83980175 -37863681 - PB1D7 SINE Alu -20 100 26 1 1225 202 352 28 19 chr11 83981420 83981527 -37862329 + MIR3 SINE MIR 81 188 -20 1 1225 279 0 0 0 chr11 83981769 83981800 -37862056 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1225 293 266 44 44 chr11 83981820 83981934 -37861922 - PB1D7 SINE Alu -6 114 1 1 1225 333 0 0 0 chr11 83982744 83982781 -37861075 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1225 206 339 82 33 chr11 83982951 83983073 -37860783 + MIR3 SINE MIR 5 132 -76 1 1225 412 253 11 0 chr11 83983074 83983161 -37860695 - RSINE1 SINE B4 -74 91 4 1 1225 1229 48 0 0 chr11 83983327 83983474 -37860382 - B1_Mus1 SINE Alu 0 148 2 1 1225 24 32 0 0 chr11 83983481 83983512 -37860344 + AT_rich Low_complexity Low_complexity 1 31 0 1 1225 347 67 16 48 chr11 83983548 83983611 -37860245 + B1_Mur3 SINE Alu 89 149 0 1 1225 396 155 0 0 chr11 83983745 83983816 -37860040 + CT-rich Low_complexity Low_complexity 3 73 0 1 1225 310 275 65 32 chr11 83983847 83983971 -37859885 - B1_Mur2 SINE Alu -18 131 4 1 1225 390 100 0 0 chr11 83984044 83984104 -37859752 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1225 817 194 0 0 chr11 83984104 83984248 -37859608 - B1_Mur2 SINE Alu 0 149 6 1 1225 252 315 18 0 chr11 83984266 83984377 -37859479 - L1M5 LINE L1 -289 5884 5772 1 1225 222 214 0 0 chr11 83984491 83984547 -37859309 + T-rich Low_complexity Low_complexity 1 56 0 1 1225 1048 110 7 0 chr11 83984547 83984693 -37859163 - B1_Mus2 SINE Alu 0 147 1 1 1225 936 214 27 45 chr11 83984774 83984994 -37858862 - B3 SINE B2 0 216 1 1 1225 299 302 110 60 chr11 83985279 83985497 -37858359 - MIRb SINE MIR -3 265 37 1 1225 250 260 119 46 chr11 83985840 83985949 -37857907 + PB1D10 SINE Alu 1 117 0 1 1225 575 147 9 0 chr11 83986420 83986536 -37857320 + (CA)n Simple_repeat Simple_repeat 1 117 0 1 1225 371 141 13 0 chr11 83987073 83987129 -37856727 + T-rich Low_complexity Low_complexity 24 80 0 1 1225 1054 123 6 11 chr11 83987129 83987310 -37856546 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1225 222 37 0 0 chr11 83987313 83987340 -37856516 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1225 371 141 13 0 chr11 83987340 83987357 -37856499 + T-rich Low_complexity Low_complexity 7 23 0 1 1225 889 131 7 0 chr11 83987371 83987516 -37856340 - B1_Mus1 SINE Alu 0 148 3 1 1225 1000 134 152 21 chr11 83987742 83987933 -37855923 - B3 SINE B2 0 216 1 1 1225 495 273 23 0 chr11 83988040 83988168 -37855688 - B1F2 SINE Alu -18 131 1 1 1225 360 224 53 0 chr11 83988233 83988309 -37855547 - ID4_ SINE ID -3 80 1 1 1225 282 95 0 0 chr11 83988568 83988610 -37855246 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1225 416 304 20 46 chr11 83988617 83988769 -37855087 - RSINE1 SINE B4 -8 157 10 1 1225 197 352 0 0 chr11 83988775 83988846 -37855010 - MER5A DNA MER1_type -112 77 7 1 1225 895 145 14 7 chr11 83989032 83989178 -37854678 + B1_Mur3 SINE Alu 2 148 -1 1 1225 1351 85 0 36 chr11 83989343 83989539 -37854317 - B2_Mm2 SINE B2 -6 189 1 1 1225 492 268 28 28 chr11 83989558 83989700 -37854156 - ID_B1 SINE B4 -2 222 81 1 1225 625 178 101 155 chr11 83990310 83990529 -37853327 - B3 SINE B2 -2 214 8 1 1225 875 263 92 41 chr11 83990541 83990910 -37852946 - MLT1B LTR MaLR 0 390 3 1 1225 386 214 34 0 chr11 83991478 83991567 -37852289 - RSINE1 SINE B4 -65 100 9 1 1225 195 42 0 0 chr11 83991907 83991931 -37851925 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1 1225 24 0 0 0 chr11 83993073 83993097 -37850759 + GC_rich Low_complexity Low_complexity 1 24 0 1 1225 34 0 0 0 chr11 83993240 83993274 -37850582 + GC_rich Low_complexity Low_complexity 1 34 0 1 1225 189 0 0 0 chr11 83994568 83994589 -37849267 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1225 241 287 103 56 chr11 83995114 83995221 -37848635 - PB1D10 SINE Alu 0 117 6 1 1225 746 117 27 11 chr11 83995236 83995378 -37848478 - B1_Mm SINE Alu -11 138 1 1 1225 452 18 18 0 chr11 83995421 83995478 -37848378 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1225 235 283 263 0 chr11 83995483 83995582 -37848274 - RSINE1 SINE B4 -17 148 24 1 1225 276 30 0 0 chr11 83995807 83995840 -37848016 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1225 271 204 56 0 chr11 83995860 83995914 -37847942 - RSINE1 SINE B4 -41 124 68 1 1225 378 202 51 0 chr11 83995965 83996044 -37847812 - ID SINE ID -141 83 1 1 1225 185 0 40 0 chr11 83996287 83996312 -37847544 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1225 752 154 31 0 chr11 83996312 83996442 -37847414 - B1_Mur4 SINE Alu -14 136 3 1 1225 621 208 7 34 chr11 83997107 83997256 -37846600 + B1F2 SINE Alu 5 149 0 1 1225 1264 34 0 0 chr11 83997537 83997684 -37846172 - B1_Mm SINE Alu 0 147 1 1 1225 770 169 8 0 chr11 83998074 83998204 -37845652 + B1_Mur4 SINE Alu 14 144 -6 1 1225 594 183 100 0 chr11 83998280 83998400 -37845456 - B1_Mus1 SINE Alu -15 133 2 1 1225 22 0 0 0 chr11 83998738 83998760 -37845096 + AT_rich Low_complexity Low_complexity 1 22 0 1 1225 327 332 43 50 chr11 83998763 83999045 -37844811 - B4A SINE B4 -12 280 1 1 1225 290 246 0 0 chr11 83999087 83999152 -37844704 - ID_B1 SINE B4 0 224 160 1 1225 450 174 257 0 chr11 83999165 83999274 -37844582 - B1_Mus1 SINE Alu -1 147 11 1 1225 214 171 329 0 chr11 84000010 84000086 -37843770 - B1F SINE Alu -1 148 48 1 1225 257 301 48 75 chr11 84000131 84000278 -37843578 - B1_Mus1 SINE Alu -5 143 1 2 1225 527 216 21 0 chr11 84000308 84000405 -37843451 - PB1D9 SINE Alu 0 120 22 3 1225 910 154 6 6 chr11 84000555 84000722 -37843134 + CT-rich Low_complexity Low_complexity 12 178 0 4 1225 1664 26 0 0 chr11 84000722 84000915 -37842941 - B2_Mm1t SINE B2 0 193 1 5 1225 1273 111 0 26 chr11 84000935 84001130 -37842726 - B2_Mm2 SINE B2 -5 190 1 6 1225 426 292 46 17 chr11 84001563 84001737 -37842119 - HAL1 LINE L1 -673 1834 1656 7 1225 391 239 135 28 chr11 84001738 84001953 -37841903 - L1MC4 LINE L1 0 8042 7805 8 1225 553 241 0 33 chr11 84002078 84002205 -37841651 - B1_Mur2 SINE Alu 0 120 7 9 1225 358 319 113 21 chr11 84002081 84002222 -37841634 - B4 SINE B4 -69 223 70 1 1225 300 236 115 62 chr11 84002222 84002335 -37841521 - PB1D7 SINE Alu 0 120 2 1 1225 236 206 0 29 chr11 84002342 84002412 -37841444 - HAL1 LINE L1 -1012 1495 1428 7 1225 363 238 0 0 chr11 84002465 84002568 -37841288 - ID4_ SINE ID -37 115 13 1 1225 231 36 0 0 chr11 84002643 84002671 -37841185 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 1225 23 86 0 0 chr11 84002924 84002982 -37840874 + AT_rich Low_complexity Low_complexity 1 58 0 1 1225 596 259 31 25 chr11 84003000 84003162 -37840694 + RSINE1 SINE B4 3 165 0 1 1225 294 229 13 39 chr11 84003321 84003399 -37840457 - PB1D10 SINE Alu 0 149 52 1 1225 445 262 20 26 chr11 84003523 84003676 -37840180 - L1MC4a LINE L1 -2 7880 7729 1 1225 495 0 0 0 chr11 84003742 84003797 -37840059 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1225 302 265 9 29 chr11 84003973 84004078 -37839778 - L1MC4a LINE L1 -364 7631 7529 1 1225 318 235 178 56 chr11 84004924 84005014 -37838842 - RSINE1 SINE B4 -57 108 8 1 1225 274 196 0 38 chr11 84005073 84005126 -37838730 - RSINE1 SINE B4 -9 156 106 2 1225 312 299 58 0 chr11 84005179 84005266 -37838590 - PB1D10 SINE Alu 0 117 26 2 1225 732 162 286 6 chr11 84005360 84005528 -37838328 + B3 SINE B2 1 215 -1 2 1225 186 342 13 27 chr11 84005532 84005607 -37838249 - MER5B DNA MER1_type -58 120 47 2 1225 210 37 0 0 chr11 84005664 84005691 -37838165 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 2 1225 381 240 188 0 chr11 84005693 84005789 -37838067 - B1_Mur4 SINE Alu -34 116 3 2 1225 577 244 0 44 chr11 84005807 84005944 -37837912 - ID_B1 SINE B4 0 224 94 2 1225 390 78 316 9 chr11 84007478 84007592 -37836264 - B2_Mm2 SINE B2 0 195 47 2 1225 1255 94 29 0 chr11 84007607 84007778 -37836078 - B2_Mm1t SINE B2 -16 177 2 2 1225 512 149 0 0 chr11 84007889 84007963 -37835893 - PB1D9 SINE Alu -41 79 6 2 1225 856 156 2 0 chr11 84008654 84008794 -37835062 + B1_Mur4 SINE Alu 8 150 0 3 1225 254 310 42 0 chr11 84009539 84009610 -37834246 - ID4 SINE ID -8 75 2 3 1225 525 237 44 44 chr11 84009616 84009753 -37834103 - B1F2 SINE Alu 0 149 13 3 1225 363 238 75 9 chr11 84009759 84009865 -37833991 - PB1D10 SINE Alu 0 117 5 3 1225 478 197 50 144 chr11 84009881 84010041 -37833815 - B1F SINE Alu 0 149 5 3 1225 207 0 0 0 chr11 84010193 84010216 -37833640 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1225 660 226 0 0 chr11 84010837 84010992 -37832864 + T-rich Low_complexity Low_complexity 1 155 0 3 1225 715 199 7 75 chr11 84011255 84011402 -37832454 + B1_Mur2 SINE Alu 3 139 -10 3 1225 221 250 61 24 chr11 84011964 84012046 -37831810 + MIRc SINE MIR 86 170 -98 3 1225 1366 56 50 6 chr11 84012874 84013053 -37830803 + B2_Mm2 SINE B2 1 187 -8 3 1225 1297 70 52 6 chr11 84013384 84013557 -37830299 - B2_Mm2 SINE B2 -14 181 1 4 1225 270 81 0 0 chr11 84013565 84013602 -37830254 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1225 22 0 0 0 chr11 84013728 84013750 -37830106 + AT_rich Low_complexity Low_complexity 1 22 0 4 1225 304 262 66 77 chr11 84013810 84013901 -37829955 - PB1D9 SINE Alu -3 117 28 4 1225 311 219 282 26 chr11 84013940 84014057 -37829799 - B1F1 SINE Alu -2 147 1 4 1225 23 33 0 0 chr11 84014698 84014728 -37829128 + AT_rich Low_complexity Low_complexity 1 30 0 4 1225 1160 81 84 28 chr11 84014732 84014910 -37828946 + B2_Mm2 SINE B2 2 189 -6 4 1225 270 188 102 34 chr11 84015120 84015208 -37828648 - L1MD3 LINE L1 -12 7983 7896 4 1225 1311 103 11 0 chr11 84015210 84015395 -37828461 - B2_Mm1t SINE B2 -6 187 1 4 1225 340 262 0 19 chr11 84015493 84015598 -37828258 - L1ME2z LINE L1 -45 6399 6297 4 1225 22 0 0 0 chr11 84015631 84015653 -37828203 + AT_rich Low_complexity Low_complexity 1 22 0 5 1225 358 316 164 34 chr11 84015731 84015908 -37827948 - B4A SINE B4 -10 282 83 5 1225 624 250 16 0 chr11 84015915 84016039 -37827817 - B1_Mus2 SINE Alu -21 126 1 5 1225 242 288 53 46 chr11 84016050 84016181 -37827675 + L1M5 LINE L1 5450 5581 -581 5 1225 234 148 0 0 chr11 84016198 84016252 -37827604 + (T)n Simple_repeat Simple_repeat 1 54 0 5 1225 1109 63 28 0 chr11 84016252 84016394 -37827462 - B1_Mus2 SINE Alu 0 147 2 5 1225 432 0 0 0 chr11 84016418 84016466 -37827390 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1225 240 208 21 0 chr11 84016486 84016534 -37827322 - MTEa LTR MaLR -15 364 316 5 1225 731 153 38 8 chr11 84016539 84016671 -37827185 + B1_Mur4 SINE Alu 2 137 -13 5 1225 205 171 0 0 chr11 84016697 84016732 -37827124 + A-rich Low_complexity Low_complexity 5 39 0 5 1225 207 161 0 0 chr11 84017082 84017113 -37826743 + polypyrimidine Low_complexity Low_complexity 2 32 0 6 153 952 112 0 27 chr11 84017116 84017268 -37826588 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 6 1226 1158 41 7 14 chr11 84017268 84017416 -37826440 - B1_Mus2 SINE Alu 0 147 1 6 1226 952 112 0 27 chr11 84017416 84017446 -37826410 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 6 1226 1242 99 10 40 chr11 84017489 84017688 -37826168 - B2_Mm2 SINE B2 -2 193 1 6 1226 533 292 43 7 chr11 84017719 84017857 -37825999 - B1F1 SINE Alu 0 149 7 6 1226 2943 30 3 57 chr11 84017986 84018372 -37825484 - RLTR10B2 LTR ERVK 0 365 1 6 1226 806 137 21 35 chr11 84018474 84018618 -37825238 + B1_Mur2 SINE Alu 1 142 -7 6 1226 887 247 82 0 chr11 84020044 84020238 -37823618 - B3 SINE B2 -6 210 1 6 1226 365 226 163 105 chr11 84020757 84020910 -37822946 + RSINE1 SINE B4 4 165 0 6 1226 784 29 19 0 chr11 84021142 84021245 -37822611 + (TC)n Simple_repeat Simple_repeat 2 106 0 7 1226 270 248 30 15 chr11 84021750 84021885 -37821971 + (TA)n Simple_repeat Simple_repeat 2 138 0 7 1226 257 189 130 39 chr11 84021894 84021971 -37821885 + MLT1A0 LTR MaLR 10 93 -272 7 1226 29 60 0 0 chr11 84022326 84022376 -37821480 + AT_rich Low_complexity Low_complexity 1 50 0 7 1226 1319 80 11 0 chr11 84022442 84022617 -37821239 - B2_Mm1t SINE B2 -14 179 3 7 1226 823 264 14 5 chr11 84023144 84023353 -37820503 - B3 SINE B2 -3 213 3 7 1226 5153 86 18 10 chr11 84023361 84024103 -37819753 - L1Md_F2 LINE L1 0 6582 5852 7 1226 207 235 0 0 chr11 84024103 84024136 -37819720 + T-rich Low_complexity Low_complexity 6 38 0 7 1226 1161 75 0 0 chr11 84024188 84024335 -37819521 + B1_Mus2 SINE Alu 1 147 0 7 1226 207 209 0 0 chr11 84024665 84024708 -37819148 + T-rich Low_complexity Low_complexity 1 43 0 7 1226 1213 55 0 7 chr11 84024710 84024858 -37818998 - B1_Mus2 SINE Alu 0 147 1 8 1226 208 163 23 0 chr11 84025112 84025155 -37818701 + T-rich Low_complexity Low_complexity 2 45 0 8 1226 251 281 18 0 chr11 84025202 84025259 -37818597 + B1F SINE Alu 91 148 -1 8 1226 21 0 0 0 chr11 84025535 84025556 -37818300 + AT_rich Low_complexity Low_complexity 1 21 0 8 1226 779 157 0 16 chr11 84025556 84025685 -37818171 - B1_Mur1 SINE Alu -2 147 21 8 1226 338 234 13 127 chr11 84025574 84025731 -37818125 - MT2B LTR ERVL -324 277 139 8 1226 718 191 35 14 chr11 84025849 84025992 -37817864 - B1_Mus2 SINE Alu 0 147 2 8 1226 26 50 0 0 chr11 84026055 84026095 -37817761 + AT_rich Low_complexity Low_complexity 1 40 0 8 1226 566 214 97 58 chr11 84026095 84026249 -37817607 - RSINE1 SINE B4 0 165 6 8 1226 803 176 29 0 chr11 84026265 84026401 -37817455 + B1_Mur3 SINE Alu 1 140 -9 8 1226 779 214 68 26 chr11 84026621 84026813 -37817043 - B3 SINE B2 -14 202 3 9 1226 423 0 0 0 chr11 84026833 84026880 -37816976 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 9 1226 782 299 0 0 chr11 84026881 84027045 -37816811 - B3A SINE B2 -34 164 1 9 1226 338 246 0 55 chr11 84027087 84027160 -37816696 - BC1_Mm scRNA scRNA -80 72 4 9 1226 579 259 135 0 chr11 84027184 84027369 -37816487 - B3 SINE B2 -6 210 1 9 1226 347 255 39 10 chr11 84027383 84027486 -37816370 - PB1D7 SINE Alu -10 110 5 9 1226 229 191 24 0 chr11 84027971 84028013 -37815843 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1226 471 18 0 0 chr11 84028108 84028164 -37815692 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1226 636 184 33 60 chr11 84028164 84028303 -37815553 - B1_Mur4 SINE Alu -15 135 4 9 1226 990 56 0 0 chr11 84029949 84030075 -37813781 - B1_Mus1 SINE Alu -21 127 2 9 1226 326 95 336 28 chr11 84030076 84030183 -37813673 - B2_Mm2 SINE B2 -9 186 47 1 1226 1154 77 60 0 chr11 84030215 84030383 -37813473 - B2_Mm1t SINE B2 -14 179 2 1 1226 740 245 14 0 chr11 84030407 84030550 -37813306 - B1_Mur1 SINE Alu 0 149 5 1 1226 778 229 48 0 chr11 84030569 84030735 -37813121 - B3 SINE B2 -1 215 42 1 1226 235 45 0 64 chr11 84030735 84030782 -37813074 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1226 214 227 0 0 chr11 84030783 84030827 -37813029 - B3A SINE B2 -153 45 2 1 1226 601 266 169 6 chr11 84031727 84031905 -37811951 - B3 SINE B2 -8 208 2 1 1226 301 307 88 0 chr11 84032041 84032155 -37811701 - B3 SINE B2 -6 210 87 1 1226 222 149 21 0 chr11 84032195 84032242 -37811614 + T-rich Low_complexity Low_complexity 2 49 0 1 1226 274 177 0 75 chr11 84032539 84032606 -37811250 + ID4 SINE ID 2 63 -20 1 1226 253 272 129 11 chr11 84032893 84032986 -37810870 - PB1 SINE Alu -11 116 13 1 1226 52 64 0 0 chr11 84033509 84033603 -37810253 + AT_rich Low_complexity Low_complexity 1 94 0 1 1226 291 349 0 0 chr11 84033708 84033791 -37810065 - RSINE1 SINE B4 -81 84 2 1 1226 309 286 0 0 chr11 84033902 84033965 -37809891 - MER2B DNA MER2_type -39 297 235 1 1226 1427 66 6 0 chr11 84034338 84034520 -37809336 - B2_Mm1a SINE B2 -10 183 1 1 1226 599 267 151 5 chr11 84034623 84034815 -37809041 - ID_B1 SINE B4 -4 220 1 1 1226 291 122 0 0 chr11 84034910 84034959 -37808897 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1 1226 590 215 161 11 chr11 84035054 84035228 -37808628 + B3 SINE B2 1 200 -16 1 1226 619 107 155 0 chr11 84035426 84035529 -37808327 + PB1D9 SINE Alu 2 120 0 1 1226 387 297 26 18 chr11 84035555 84035668 -37808188 + PB1 SINE Alu 7 120 -7 1 1226 630 184 133 23 chr11 84035720 84035848 -37808008 + B1_Mus1 SINE Alu 1 142 -6 1 1226 611 26 13 0 chr11 84035850 84035927 -37807929 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1 1226 242 333 37 0 chr11 84036218 84036299 -37807557 - PB1D7 SINE Alu -27 93 10 1 1226 735 151 249 6 chr11 84036864 84037037 -37806819 - B3 SINE B2 0 216 2 1 1226 330 304 96 48 chr11 84037329 84037344 -37806512 + CYRA11_Mm Unknown Y-chromosome 159 266 -351 1 1226 1121 169 19 14 chr11 84037344 84037560 -37806296 - URR1B DNA MER1_type -1 224 8 1 1226 330 304 96 48 chr11 84037560 84037578 -37806278 + CYRA11_Mm Unknown Y-chromosome 267 419 -198 1 1226 2691 129 39 15 chr11 84038183 84038640 -37805216 - Lx3C LINE L1 -2 6974 6507 1 1226 485 50 0 0 chr11 84038640 84038700 -37805156 + Lx3C LINE L1 5612 5671 -1305 1 1226 656 176 160 0 chr11 84038701 84038826 -37805030 - B1_Mus1 SINE Alu -1 147 3 1 1226 186 167 0 0 chr11 84039810 84039846 -37804010 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 1 1226 546 309 93 19 chr11 84039873 84040130 -37803726 - B4A SINE B4 -16 276 1 1 1226 656 197 14 55 chr11 84040230 84040375 -37803481 + B1_Mur2 SINE Alu 1 139 -10 1 1226 762 69 0 0 chr11 84040375 84040476 -37803380 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 1 1226 1555 37 5 20 chr11 84040512 84040707 -37803149 + B2_Mm1a SINE B2 2 193 0 1 1226 479 231 0 0 chr11 84040723 84040814 -37803042 + B3A SINE B2 3 93 -105 1 1226 606 165 19 23 chr11 84040788 84040919 -37802937 + B1_Mur4 SINE Alu 22 149 -1 1 1226 330 26 0 0 chr11 84041345 84041384 -37802472 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1226 960 146 20 51 chr11 84042013 84042208 -37801648 - B2_Mm2 SINE B2 -6 189 1 1 1226 364 373 8 0 chr11 84042236 84042354 -37801502 + ID_B1 SINE B4 77 195 -29 1 1226 644 305 103 75 chr11 84042818 84043176 -37800680 - LTR79 LTR ERVL -77 450 83 1 1226 1014 207 19 10 chr11 84043303 84043508 -37800348 - B3 SINE B2 -9 207 1 1 1226 567 271 31 8 chr11 84043764 84043894 -37799962 + B1F1 SINE Alu 12 144 -5 1 1226 382 228 0 0 chr11 84044395 84044474 -37799382 - B3A SINE B2 -33 165 87 1 1226 780 181 0 0 chr11 84044476 84044609 -37799247 - B1_Mur3 SINE Alu -16 133 1 1 1226 337 229 9 9 chr11 84044614 84044720 -37799136 + CT-rich Low_complexity Low_complexity 4 109 0 1 1226 711 191 0 16 chr11 84044758 84044886 -37798970 - B1_Mus2 SINE Alu -21 126 1 1 1226 419 287 48 32 chr11 84044778 84044904 -37798952 - B4 SINE B4 -95 197 70 1 1226 1225 28 14 0 chr11 84044927 84045072 -37798784 - B1_Mus2 SINE Alu 0 147 1 1 1226 444 221 24 81 chr11 84045902 84045953 -37797903 - PB1 SINE Alu -11 116 73 1 1226 969 76 0 0 chr11 84045953 84046084 -37797772 + (TTTTC)n Simple_repeat Simple_repeat 4 134 0 1 1226 541 70 0 0 chr11 84046084 84046155 -37797701 - B1_Mus2 SINE Alu -76 71 1 1 1226 258 314 88 56 chr11 84046155 84046210 -37797646 - MT2B2 LTR ERVL -427 157 99 1 1226 255 305 0 0 chr11 84046733 84046792 -37797064 + ID4_ SINE ID 23 81 -2 1 1226 387 0 0 0 chr11 84046860 84046903 -37796953 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1226 366 80 0 0 chr11 84047041 84047091 -37796765 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1226 794 187 36 0 chr11 84047166 84047305 -37796551 + B1_Mur4 SINE Alu 5 148 -2 1 1226 439 231 67 0 chr11 84047436 84047540 -37796316 + PB1D10 SINE Alu 1 111 -6 1 1226 207 0 0 0 chr11 84047601 84047624 -37796232 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1226 924 277 134 35 chr11 84047746 84048312 -37795544 + L1MEg LINE L1 348 969 -5115 1 1226 446 366 82 62 chr11 84048342 84048633 -37795223 + MLT1H LTR MaLR 37 333 -216 1 1226 292 342 14 0 chr11 84048802 84048875 -37794981 + ID SINE ID 4 77 -147 1 1226 3458 25 2 0 chr11 84049043 84049438 -37794418 + MTA_Mm LTR MaLR 1 396 0 1 1226 485 320 13 127 chr11 84049440 84049581 -37794275 + MLT1H-int LTR MaLR 96 231 -1178 1 1226 693 275 15 49 chr11 84049581 84049784 -37794072 + B3A SINE B2 2 197 -1 1 1226 485 320 13 127 chr11 84049784 84049871 -37793985 + MLT1H-int LTR MaLR 232 298 -1111 1 1226 482 268 133 26 chr11 84049896 84050091 -37793765 + ID_B1 SINE B4 1 216 -8 1 1226 858 192 107 0 chr11 84050097 84050284 -37793572 + B3 SINE B2 1 207 -9 1 1226 21 0 0 0 chr11 84050287 84050308 -37793548 + AT_rich Low_complexity Low_complexity 1 21 0 1 1226 918 273 69 6 chr11 84050315 84050647 -37793209 + MLT1H-int LTR MaLR 1057 1409 0 1 1226 964 310 24 60 chr11 84050646 84051039 -37792817 + MLT1H LTR MaLR 1 391 -188 1 1226 297 284 73 13 chr11 84051280 84051430 -37792426 + L1MEg LINE L1 1038 1196 -4888 1 1226 369 0 0 0 chr11 84051449 84051490 -37792366 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1226 524 200 10 0 chr11 84051582 84051682 -37792174 + PB1D9 SINE Alu 4 104 -16 1 1226 379 148 55 18 chr11 84051685 84051795 -37792061 + GA-rich Low_complexity Low_complexity 1 114 0 1 1226 32 26 0 0 chr11 84052706 84052745 -37791111 + AT_rich Low_complexity Low_complexity 1 39 0 1 1226 970 123 0 0 chr11 84052818 84052956 -37790900 + B1_Mur3 SINE Alu 11 148 -1 1 1226 1235 41 0 0 chr11 84053041 84053188 -37790668 + B1_Mm SINE Alu 1 147 0 1 1226 371 269 18 36 chr11 84053256 84053368 -37790488 + PB1D10 SINE Alu 3 112 -5 1 1226 1000 67 89 0 chr11 84053403 84053538 -37790318 - B1_Mus2 SINE Alu 0 147 1 1 1226 2482 74 3 47 chr11 84053711 84053784 -37790072 - ORR1A2 LTR MaLR 0 327 270 1 1226 1127 48 0 46 chr11 84053784 84053937 -37789919 - B1_Mm SINE Alu 0 147 2 1 1226 2482 74 3 47 chr11 84053937 84054205 -37789651 - ORR1A2 LTR MaLR -58 269 1 1 1226 440 349 37 0 chr11 84054446 84054661 -37789195 + MER58A DNA MER1_type 2 224 0 1 1226 1064 58 0 42 chr11 84055096 84055240 -37788616 - B1_Mus1 SINE Alu -10 138 1 1 1226 580 342 101 30 chr11 84055441 84055778 -37788078 - MLT1J-int LTR MaLR -369 1018 658 1 1226 768 249 42 14 chr11 84055788 84056000 -37787856 - ID_B1 SINE B4 -5 219 2 1 1226 282 377 50 38 chr11 84056046 84056206 -37787650 - MLT1J-int LTR MaLR -1221 166 5 1 1226 847 220 75 0 chr11 84057160 84057346 -37786510 + B3 SINE B2 2 201 -15 1 1226 25 0 0 0 chr11 84057349 84057374 -37786482 + AT_rich Low_complexity Low_complexity 1 25 0 1 1226 580 313 181 0 chr11 84057598 84057780 -37786076 - 7SLRNA srpRNA srpRNA -99 215 1 1 1226 613 314 45 0 chr11 84057881 84058037 -37785819 - RSINE1 SINE B4 0 165 3 1 1226 891 188 0 7 chr11 84058076 84058221 -37785635 + B1_Mur1 SINE Alu 3 146 -3 1 1226 604 12 24 0 chr11 84059617 84059701 -37784155 - L1Md_F2 LINE L1 -5 6577 6492 1 1226 230 337 0 0 chr11 84059855 84059938 -37783918 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 1 1226 181 222 27 14 chr11 84060295 84060368 -37783488 + CT-rich Low_complexity Low_complexity 4 77 0 1 1226 267 254 191 0 chr11 84060371 84060434 -37783422 - ID4_ SINE ID 0 83 9 1 1226 1036 216 9 0 chr11 84060594 84060807 -37783049 - B3 SINE B2 0 216 2 1 1226 222 105 0 0 chr11 84060997 84061035 -37782821 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1226 457 280 50 0 chr11 84061037 84061137 -37782719 - RSINE1 SINE B4 -51 114 10 1 1226 255 279 56 37 chr11 84061149 84061257 -37782599 + MER102a DNA MER1_type 211 320 -10 1 1226 3500 47 158 2 chr11 84061691 84062158 -37781698 - L1Md_F2 LINE L1 -12 6570 6031 1 1226 270 319 109 15 chr11 84062264 84062401 -37781455 - L2b LINE L2 -49 3326 3177 1 1226 492 274 34 17 chr11 84063529 84063648 -37780208 - RSINE1 SINE B4 -17 148 28 1 1226 715 156 82 0 chr11 84063658 84063780 -37780076 - B1_Mus1 SINE Alu -16 132 1 1 1226 279 79 0 0 chr11 84064170 84064208 -37779648 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1 1226 591 231 57 16 chr11 84064295 84064308 -37779548 - ID_B1 SINE B4 -15 209 197 1 1226 638 253 110 30 chr11 84064308 84064508 -37779348 + B3 SINE B2 1 216 0 1 1226 591 231 57 16 chr11 84064508 84064617 -37779239 - ID_B1 SINE B4 -28 196 83 1 1226 602 276 76 92 chr11 84065207 84065224 -37778632 - B4A SINE B4 -44 248 232 1 1226 698 172 19 58 chr11 84065224 84065378 -37778478 - B1_Mur2 SINE Alu 0 149 2 2 1226 602 276 76 92 chr11 84065378 84065611 -37778245 - B4A SINE B4 -61 231 3 1 1226 411 214 137 0 chr11 84066275 84066392 -37777464 - B1F1 SINE Alu 0 149 17 2 1226 591 311 11 38 chr11 84066447 84066631 -37777225 - B3A SINE B2 -19 179 1 2 1226 240 311 55 39 chr11 84066679 84066806 -37777050 + YREP_Mm Unknown Unknown 166 294 -1518 2 1226 579 267 15 0 chr11 84066695 84066826 -37777030 - ID_B1 SINE B4 -8 216 84 2 1226 389 306 0 109 chr11 84066842 84066879 -37776977 - ID_B1 SINE B4 0 224 83 2 1226 658 195 0 0 chr11 84066879 84067002 -37776854 - B1_Mur2 SINE Alu -25 124 2 2 1226 227 203 17 0 chr11 84067221 84067280 -37776576 + CT-rich Low_complexity Low_complexity 2 61 0 2 1226 2162 151 71 14 chr11 84067284 84067708 -37776148 - RMER1B Other Other -61 1005 558 2 1226 227 240 56 74 chr11 84067708 84067762 -37776094 - PB1D7 SINE Alu -66 54 2 2 1226 186 43 0 0 chr11 84067947 84067970 -37775886 + (TAA)n Simple_repeat Simple_repeat 1 23 0 2 1226 585 110 142 52 chr11 84067987 84068121 -37775735 - B1_Mm SINE Alu -1 146 1 2 1226 798 88 268 14 chr11 84068168 84068306 -37775550 + B2_Mm1t SINE B2 2 174 -19 2 1226 27 49 0 0 chr11 84068351 84068392 -37775464 + AT_rich Low_complexity Low_complexity 1 41 0 2 1226 1422 290 75 17 chr11 84068638 84069344 -37774512 + L1MB2 LINE L1 5384 6130 -41 2 1226 459 95 0 0 chr11 84069745 84069819 -37774037 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1226 590 14 0 26 chr11 84071113 84071189 -37772667 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 2 1226 956 201 26 32 chr11 84071449 84071639 -37772217 - B3A SINE B2 -3 195 7 2 1226 742 209 72 24 chr11 84071671 84071838 -37772018 - ID_B1 SINE B4 -49 175 1 2 1226 272 237 51 0 chr11 84071849 84071908 -37771948 + polypyrimidine Low_complexity Low_complexity 3 64 0 2 1226 371 195 171 11 chr11 84072008 84072096 -37771760 + B1F SINE Alu 1 102 -47 2 1226 180 0 0 0 chr11 84072103 84072123 -37771733 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1226 485 200 90 28 chr11 84072283 84072427 -37771429 + RSINE1 SINE B4 3 155 -10 2 1226 216 0 0 0 chr11 84072553 84072577 -37771279 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1226 1123 83 0 0 chr11 84072577 84072721 -37771135 - B1_Mus2 SINE Alu -3 144 1 2 1226 246 246 0 15 chr11 84073820 84073886 -37769970 + ID_B1 SINE B4 114 178 -46 2 1226 588 225 138 80 chr11 84074389 84074664 -37769192 - B4A SINE B4 -1 291 1 2 1226 347 266 0 25 chr11 84074682 84074763 -37769093 - ID_B1 SINE B4 -69 155 77 2 1226 354 231 0 49 chr11 84075266 84075348 -37768508 - ID4 SINE ID -4 79 2 2 1226 656 209 0 79 chr11 84075402 84075542 -37768314 - B1_Mur3 SINE Alu -20 129 1 2 1226 342 173 0 209 chr11 84075417 84075556 -37768300 - MT2B LTR ERVL -337 264 155 2 1226 253 200 151 9 chr11 84075662 84075770 -37768086 + B3 SINE B2 1 127 -66 2 1226 338 98 0 19 chr11 84078716 84078768 -37765088 + ID_B1 SINE B4 174 224 0 2 1226 283 282 13 0 chr11 84078975 84079053 -37764803 + ID4 SINE ID 4 82 -1 2 1226 440 210 142 8 chr11 84079082 84079202 -37764654 - B1_Mm SINE Alu -7 140 5 2 1226 420 248 74 33 chr11 84079547 84079668 -37764188 + B1F1 SINE Alu 24 149 0 2 1226 249 222 16 16 chr11 84079711 84079775 -37764081 + L1M5 LINE L1 4728 4791 -1355 2 1226 756 94 0 100 chr11 84080086 84080216 -37763640 + B1_Mus1 SINE Alu 26 142 -6 2 1226 234 319 9 0 chr11 84080331 84080447 -37763409 + L1M5 LINE L1 5304 5420 -753 2 1226 294 201 31 22 chr11 84080942 84081017 -37762839 + B1F SINE Alu 35 107 -13 2 1226 573 115 244 17 chr11 84081208 84081323 -37762533 - B1_Mus1 SINE Alu -7 141 1 2 1226 219 69 0 0 chr11 84081346 84081375 -37762481 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1226 372 246 0 0 chr11 84081378 84081443 -37762413 + PB1D10 SINE Alu 1 65 -52 2 1226 24 0 0 0 chr11 84081447 84081471 -37762385 + AT_rich Low_complexity Low_complexity 1 24 0 2 1226 245 197 16 0 chr11 84081507 84081568 -37762288 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 1226 934 231 25 25 chr11 84081643 84081847 -37762009 + B3 SINE B2 6 209 -7 2 1226 1036 212 9 24 chr11 84081859 84082072 -37761784 - B3 SINE B2 0 216 7 2 1226 207 0 0 0 chr11 84083013 84083036 -37760820 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1226 239 288 25 0 chr11 84083150 84083230 -37760626 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1226 584 277 89 13 chr11 84083271 84083428 -37760428 - B4 SINE B4 -109 183 15 2 1226 248 306 92 76 chr11 84083559 84083718 -37760138 - MIR3 SINE MIR -54 154 3 2 1226 447 118 0 0 chr11 84083996 84084081 -37759775 + (TG)n Simple_repeat Simple_repeat 1 85 0 2 1226 1195 211 58 130 chr11 84086869 84087262 -37756594 - MTE2a LTR MaLR -14 365 1 2 1226 1517 49 38 0 chr11 84087577 84087761 -37756095 - B2_Mm2 SINE B2 -4 191 1 2 1226 239 180 16 0 chr11 84087856 84087917 -37755939 + T-rich Low_complexity Low_complexity 3 64 0 2 1226 335 242 158 0 chr11 84088220 84088315 -37755541 + B3A SINE B2 1 110 -88 2 1226 1257 46 80 11 chr11 84088586 84088761 -37755095 - B2_Mm2 SINE B2 -7 188 2 2 1226 197 55 35 69 chr11 84088779 84088837 -37755019 + T-rich Low_complexity Low_complexity 2 57 0 2 1226 195 129 0 0 chr11 84089599 84089630 -37754226 + (TTG)n Simple_repeat Simple_repeat 1 31 0 2 1226 278 262 401 0 chr11 84089669 84089776 -37754080 - B3 SINE B2 -42 174 25 2 1226 22 56 0 0 chr11 84091767 84091803 -37752053 + AT_rich Low_complexity Low_complexity 1 36 0 2 1226 240 283 64 11 chr11 84092195 84092297 -37751559 - MIR SINE MIR -44 224 119 2 1226 230 270 161 9 chr11 84092867 84092979 -37750877 - MIRb SINE MIR -135 133 5 2 1226 246 246 0 32 chr11 84094264 84094327 -37749529 + CT-rich Low_complexity Low_complexity 1 61 0 2 1226 29 47 0 0 chr11 84094647 84094690 -37749166 + AT_rich Low_complexity Low_complexity 1 43 0 2 1226 461 292 8 34 chr11 84095497 84095614 -37748242 - RSINE1 SINE B4 -48 117 4 2 1226 577 271 30 0 chr11 84095986 84096119 -37747737 + B4A SINE B4 4 140 -152 2 1226 252 100 0 0 chr11 84096308 84096348 -37747508 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1226 333 252 34 101 chr11 84096575 84096694 -37747162 - PB1D10 SINE Alu 0 117 7 2 1226 871 313 75 75 chr11 84096694 84097150 -37746706 - MER21B LTR ERV1 -382 481 26 2 1226 583 259 121 0 chr11 84097348 84097572 -37746284 - Charlie5 DNA MER1_type 0 2624 2374 2 1226 549 289 7 15 chr11 84097949 84098086 -37745770 - ID_B1 SINE B4 -8 216 81 2 1226 852 181 75 0 chr11 84098525 84098685 -37745171 - B3 SINE B2 0 216 45 2 1226 1175 100 6 0 chr11 84101379 84101549 -37742307 - B2_Mm1t SINE B2 -22 171 1 2 1226 21 36 0 0 chr11 84101639 84101667 -37742189 + AT_rich Low_complexity Low_complexity 1 28 0 2 1226 591 53 0 0 chr11 84101669 84101744 -37742112 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 2 1226 186 171 0 0 chr11 84102822 84102863 -37740993 + T-rich Low_complexity Low_complexity 1 41 0 2 1226 630 173 56 0 chr11 84102866 84102994 -37740862 - B1_Mus2 SINE Alu -3 147 1 2 1226 231 338 116 89 chr11 84102868 84103014 -37740842 - B4 SINE B4 -71 221 72 2 1226 324 0 0 0 chr11 84103491 84103527 -37740329 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 1226 269 197 15 0 chr11 84104648 84104714 -37739142 + GA-rich Low_complexity Low_complexity 1 67 0 2 1226 231 36 0 0 chr11 84106614 84106642 -37737214 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1226 1518 53 5 0 chr11 84107596 84107785 -37736071 - B2_Mm1t SINE B2 -3 190 1 2 1226 540 0 0 0 chr11 84108842 84108902 -37734954 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 2 1226 414 85 0 0 chr11 84109035 84109094 -37734762 + (CATA)n Simple_repeat Simple_repeat 1 59 0 2 1226 261 0 0 0 chr11 84109094 84109122 -37734734 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1226 607 242 8 8 chr11 84109152 84109281 -37734575 - B1_Mur4 SINE Alu 0 150 22 2 1226 775 178 20 20 chr11 84109308 84109457 -37734399 - B1_Mur4 SINE Alu 0 150 2 2 1226 195 349 70 51 chr11 84109515 84109672 -37734184 - MIRb SINE MIR -58 210 51 2 1226 324 304 0 12 chr11 84111474 84111554 -37732302 + RSINE1 SINE B4 2 80 -85 2 1226 273 29 0 0 chr11 84111597 84111631 -37732225 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1226 1138 64 0 0 chr11 84111631 84111771 -37732085 - B1_Mus1 SINE Alu -8 140 1 2 1226 918 256 39 0 chr11 84111784 84111991 -37731865 - B3 SINE B2 -1 215 1 2 1226 261 232 105 57 chr11 84112394 84112499 -37731357 - PB1D7 SINE Alu -9 111 2 2 1226 23 33 0 0 chr11 84112502 84112532 -37731324 + AT_rich Low_complexity Low_complexity 1 30 0 2 1226 382 264 213 45 chr11 84112552 84112707 -37731149 - B3A SINE B2 -16 182 2 2 1226 266 148 19 0 chr11 84112813 84112867 -37730989 + CT-rich Low_complexity Low_complexity 1 55 0 2 1226 228 250 36 0 chr11 84112888 84112944 -37730912 - MTC LTR MaLR -249 130 73 2 1226 779 252 28 37 chr11 84112944 84113162 -37730694 + B3 SINE B2 1 216 0 2 1226 267 271 65 43 chr11 84113162 84113291 -37730565 - MTC LTR MaLR -285 134 1 2 1226 30 0 0 0 chr11 84113747 84113777 -37730079 + AT_rich Low_complexity Low_complexity 1 30 0 2 1226 852 192 0 7 chr11 84116303 84116450 -37727406 + B1_Mus1 SINE Alu 1 146 -2 2 1226 697 186 0 0 chr11 84118241 84118359 -37725497 - PB1D9 SINE Alu 0 120 3 2 1226 262 173 118 42 chr11 84119060 84119168 -37724688 + B1F SINE Alu 1 149 0 3 1226 1679 21 0 0 chr11 84119423 84119616 -37724240 + B2_Mm1a SINE B2 1 193 0 3 1226 230 289 12 24 chr11 84120682 84120767 -37723089 + CT-rich Low_complexity Low_complexity 3 86 0 3 1226 16920 6 3 0 chr11 84121098 84123805 -37720051 - L1Md_A LINE L1 0 6582 3865 3 1226 2227 4 0 0 chr11 84123802 84124069 -37719787 + L1Md_A LINE L1 3595 3861 -2022 3 1226 305 206 0 68 chr11 84124428 84124501 -37719355 - PB1D9 SINE Alu 0 120 53 3 1226 519 17 0 0 chr11 84124537 84124597 -37719259 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1226 330 237 0 0 chr11 84124617 84124676 -37719180 - B1F SINE Alu -88 61 3 3 1226 1704 21 0 0 chr11 84125279 84125472 -37718384 + B2_Mm1a SINE B2 1 193 0 3 1226 777 249 73 65 chr11 84125945 84126177 -37717679 - B4A SINE B4 -58 234 1 3 1226 1345 82 11 11 chr11 84126622 84126807 -37717049 + B2_Mm1t SINE B2 1 185 -8 3 1226 452 275 28 42 chr11 84127247 84127391 -37716465 - ID_B1 SINE B4 -7 217 76 3 1226 434 293 10 10 chr11 84128061 84128161 -37715695 - RSINE1 SINE B4 -54 111 12 3 1226 981 263 83 55 chr11 84128736 84129108 -37714748 - MTD LTR MaLR -2 417 1 3 1226 248 327 149 40 chr11 84131033 84131208 -37712648 - L2c LINE L2 -1 3386 3193 3 1226 820 279 65 49 chr11 84131783 84132073 -37711783 - L1ME2 LINE L1 -179 5985 5693 3 1226 950 159 0 7 chr11 84132073 84132219 -37711637 - B1_Mur2 SINE Alu 0 149 5 3 1226 820 279 65 49 chr11 84132219 84132377 -37711479 - L1ME2 LINE L1 -472 5692 5530 3 1226 293 316 137 0 chr11 84132513 84132652 -37711204 - RSINE1 SINE B4 -3 162 5 3 1226 309 26 0 0 chr11 84133078 84133116 -37710740 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1226 21 57 0 0 chr11 84133414 84133449 -37710407 + AT_rich Low_complexity Low_complexity 1 35 0 3 1226 204 139 28 0 chr11 84135473 84135509 -37708347 + T-rich Low_complexity Low_complexity 3 39 0 3 1226 638 172 54 88 chr11 84135511 84135658 -37708198 - B1_Mur1 SINE Alu -7 142 1 3 1226 362 251 172 40 chr11 84136284 84136458 -37707398 + L1MC5 LINE L1 7645 7841 -120 3 1226 449 225 118 44 chr11 84136660 84136795 -37707061 - B1F2 SINE Alu -1 148 4 3 1226 47 19 0 0 chr11 84136872 84136926 -37706930 + AT_rich Low_complexity Low_complexity 1 54 0 3 1226 337 238 86 12 chr11 84136981 84137062 -37706794 + PB1D10 SINE Alu 31 117 0 3 1226 618 176 176 0 chr11 84137383 84137508 -37706348 - B1_Mus2 SINE Alu 0 147 1 3 1226 23 33 0 0 chr11 84138209 84138239 -37705617 + AT_rich Low_complexity Low_complexity 1 30 0 3 1226 486 0 0 0 chr11 84140157 84140211 -37703645 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1226 804 188 35 0 chr11 84140211 84140355 -37703501 - B1_Mur4 SINE Alu -1 149 1 3 1226 207 0 0 0 chr11 84140684 84140707 -37703149 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1226 27 0 0 0 chr11 84141016 84141043 -37702813 + AT_rich Low_complexity Low_complexity 1 27 0 3 1226 203 147 0 0 chr11 84141232 84141266 -37702590 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1226 435 299 12 37 chr11 84141267 84141430 -37702426 - RSINE1 SINE B4 -4 161 3 3 1226 34 72 0 0 chr11 84141435 84141504 -37702352 + AT_rich Low_complexity Low_complexity 1 69 0 3 1226 198 0 0 0 chr11 84141598 84141620 -37702236 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1226 360 238 23 35 chr11 84141630 84141717 -37702139 + PB1D9 SINE Alu 29 114 -6 3 1226 507 265 186 48 chr11 84141882 84142215 -37701641 + MTEb LTR MaLR 1 379 0 3 1226 21 0 0 0 chr11 84142362 84142383 -37701473 + AT_rich Low_complexity Low_complexity 1 21 0 3 1226 327 189 0 119 chr11 84142852 84142936 -37700920 + ID4_ SINE ID 10 83 0 3 1226 255 279 10 113 chr11 84142936 84142948 -37700908 + B4 SINE B4 12 97 -195 3 1226 3141 34 39 5 chr11 84143305 84143688 -37700168 + MTA_Mm LTR MaLR 1 396 0 3 1226 483 18 0 0 chr11 84145899 84145955 -37697901 + (TTTCC)n Simple_repeat Simple_repeat 5 60 0 3 1226 270 241 87 54 chr11 84146636 84146728 -37697128 + AmnSINE1 SINE SINE 467 561 -14 3 1226 375 321 0 0 chr11 84147017 84147129 -37696727 - PB1D7 SINE Alu -8 112 1 3 1226 217 296 0 0 chr11 84147179 84147223 -37696633 - PB1D10 SINE Alu -71 46 3 3 1226 1209 81 0 89 chr11 84147342 84147545 -37696311 - B2_Mm2 SINE B2 -9 186 2 3 1226 318 26 0 0 chr11 84147906 84147945 -37695911 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1226 287 303 0 50 chr11 84148005 84148085 -37695771 - PB1D7 SINE Alu -32 88 13 3 153 484 219 26 33 chr11 84148165 84148316 -37695540 - L1MD3 LINE L1 -116 7879 7730 3 1227 270 310 0 0 chr11 84148502 84148573 -37695283 + ID4_ SINE ID 2 72 -11 3 1227 226 0 59 0 chr11 84149054 84149088 -37694768 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1227 465 232 114 18 chr11 84149088 84149202 -37694654 + B1F SINE Alu 25 149 0 3 1227 406 358 20 5 chr11 84149431 84149594 -37694262 - MIRb SINE MIR -102 174 1 3 1227 524 275 42 14 chr11 84149813 84149957 -37693899 + B1F SINE Alu 1 148 -1 3 1227 180 0 0 0 chr11 84150375 84150395 -37693461 + (CTG)n Simple_repeat Simple_repeat 1 20 0 3 1227 500 263 71 13 chr11 84152235 84152389 -37691467 + RSINE1 SINE B4 3 165 0 3 1227 255 256 269 0 chr11 84152447 84152525 -37691331 - B3A SINE B2 -99 99 1 3 1227 420 20 0 0 chr11 84152565 84152614 -37691242 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1227 279 54 0 0 chr11 84152614 84152651 -37691205 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1227 525 296 7 29 chr11 84152665 84152801 -37691055 - B3 SINE B2 -81 135 3 3 1227 243 324 90 56 chr11 84152801 84152945 -37690911 + L2 LINE L2 731 879 -2540 3 1227 244 71 99 14 chr11 84153206 84153277 -37690579 + T-rich Low_complexity Low_complexity 2 78 0 3 1227 697 134 5 212 chr11 84153283 84153472 -37690384 - B1_Mur4 SINE Alu 0 150 1 3 1227 216 0 0 0 chr11 84153478 84153502 -37690354 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1227 409 267 105 0 chr11 84153513 84153618 -37690238 - B1_Mur1 SINE Alu -20 129 14 3 1227 180 302 57 0 chr11 84153728 84153781 -37690075 + L2 LINE L2 1229 1284 -2135 3 1227 664 290 158 37 chr11 84154107 84154461 -37689395 + L2 LINE L2 1813 2209 -1210 3 1227 232 234 81 88 chr11 84156132 84156268 -37687588 - MER119 DNA MER1_type -50 533 399 3 1227 315 286 117 95 chr11 84156331 84156555 -37687301 - L1M5 LINE L1 -454 5670 5440 3 1227 847 146 0 77 chr11 84156555 84156711 -37687145 + B1_Mur4 SINE Alu 1 144 -6 3 1227 315 286 117 95 chr11 84156711 84156811 -37687045 - L1M5 LINE L1 -685 5439 5339 3 1227 2825 34 20 14 chr11 84156921 84157275 -37686581 - L1Md_F3 LINE L1 -15 6569 6214 3 1227 545 167 19 10 chr11 84157555 84157658 -37686198 - PB1D9 SINE Alu -16 104 1 3 1227 469 317 37 27 chr11 84157658 84157846 -37686010 - MER119 DNA MER1_type -25 558 369 3 1227 331 321 12 0 chr11 84157871 84157952 -37685904 - ID_B1 SINE B4 -36 188 107 3 1227 839 296 125 33 chr11 84157963 84158298 -37685558 - MER119 DNA MER1_type -209 374 9 3 1227 193 191 61 41 chr11 84158315 84158364 -37685492 - L3 LINE CR1 -4334 155 106 3 1227 22 0 0 0 chr11 84159012 84159034 -37684822 + AT_rich Low_complexity Low_complexity 1 22 0 3 1227 300 221 12 38 chr11 84159614 84159694 -37684162 - ID2 SINE ID -5 78 1 3 1227 219 88 0 0 chr11 84160463 84160497 -37683359 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 3 1227 201 153 42 0 chr11 84160546 84160618 -37683238 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1227 1265 78 0 6 chr11 84161018 84161198 -37682658 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 3 1227 191 336 100 0 chr11 84161314 84161424 -37682432 + MIRb SINE MIR 102 222 -46 3 1227 253 206 0 45 chr11 84163288 84163354 -37680502 + CT-rich Low_complexity Low_complexity 1 63 0 3 1227 672 197 81 96 chr11 84165165 84165362 -37678494 - B3A SINE B2 0 198 5 3 1227 471 326 16 62 chr11 84165671 84165864 -37677992 + MIR SINE MIR 13 196 -66 3 1227 1131 199 220 14 chr11 84166831 84167090 -37676766 - MTD LTR MaLR 0 419 90 3 1227 607 25 25 0 chr11 84167090 84167171 -37676685 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 1227 1131 199 220 14 chr11 84167171 84167257 -37676599 - MTD LTR MaLR -330 89 3 3 1227 24 85 0 0 chr11 84167520 84167579 -37676277 + AT_rich Low_complexity Low_complexity 1 59 0 3 1227 465 175 243 0 chr11 84167616 84167719 -37676137 + B1_Mur2 SINE Alu 6 133 -16 3 1227 471 294 18 24 chr11 84169558 84169722 -37674134 + RSINE1 SINE B4 3 165 0 3 1227 630 255 48 118 chr11 84170376 84170630 -37673226 + L1MC3 LINE L1 5221 5469 -710 3 1227 274 299 13 0 chr11 84170630 84170707 -37673149 - ID4 SINE ID -4 79 2 3 1227 630 292 70 55 chr11 84170707 84171198 -37672658 + L1MC3 LINE L1 5470 6021 -163 3 1227 423 284 28 0 chr11 84171335 84171444 -37672412 - PB1D10 SINE Alu -5 112 1 3 1227 435 239 0 0 chr11 84171359 84171447 -37672409 - ID_B1 SINE B4 -58 166 79 3 1227 253 194 133 133 chr11 84171775 84171888 -37671968 + PB1D10 SINE Alu 5 117 0 3 1227 793 88 299 0 chr11 84173606 84173743 -37670113 + B2_Mm1t SINE B2 2 179 -14 3 1227 306 121 302 50 chr11 84173786 84173905 -37669951 + B2_Mm2 SINE B2 47 195 0 3 1227 25 0 0 0 chr11 84175137 84175162 -37668694 + AT_rich Low_complexity Low_complexity 1 25 0 3 1227 224 77 0 25 chr11 84175350 84175390 -37668466 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 1227 268 246 0 97 chr11 84178288 84178360 -37665496 - ID4 SINE ID -16 67 3 3 1227 1137 62 7 7 chr11 84178407 84178554 -37665302 + B1_Mus1 SINE Alu 1 147 -1 3 1227 364 181 156 37 chr11 84178593 84178702 -37665154 + B1F SINE Alu 28 149 0 3 1227 719 204 20 20 chr11 84178864 84179014 -37664842 + B4 SINE B4 49 198 -94 3 1227 461 252 17 17 chr11 84179175 84179292 -37664564 - B1F SINE Alu 0 149 33 4 1227 1219 28 0 0 chr11 84179409 84179554 -37664302 + B1_Mus2 SINE Alu 3 147 0 4 1227 929 202 63 15 chr11 84179580 84179786 -37664070 + B3 SINE B2 1 216 0 4 1227 270 286 121 10 chr11 84180645 84180744 -37663112 + PB1D10 SINE Alu 7 116 -1 4 1227 25 31 0 0 chr11 84185367 84185399 -37658457 + AT_rich Low_complexity Low_complexity 1 32 0 4 1227 321 109 0 35 chr11 84185416 84185473 -37658383 - B2_Mm2 SINE B2 -94 101 47 4 1227 206 189 38 0 chr11 84185502 84185555 -37658301 + (CACTC)n Simple_repeat Simple_repeat 1 55 0 4 1227 1232 61 73 0 chr11 84185576 84185740 -37658116 - B2_Mm1t SINE B2 -14 179 4 4 1227 1760 103 103 0 chr11 84185742 84186023 -37657833 - L1_Mus3 LINE L1 0 6638 6329 4 1227 245 146 0 0 chr11 84186374 84186415 -37657441 + B1_Mus2 SINE Alu 93 133 -14 4 1227 941 204 65 0 chr11 84187391 84187592 -37656264 - B3 SINE B2 -2 214 1 4 1227 524 267 52 0 chr11 84187649 84187765 -37656091 - RSINE1 SINE B4 -42 123 2 4 1227 1000 45 105 0 chr11 84187795 84187928 -37655928 + B1_Mus2 SINE Alu 1 147 0 4 1227 185 0 40 0 chr11 84187931 84187956 -37655900 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1227 662 229 8 0 chr11 84188418 84188549 -37655307 + B3 SINE B2 9 140 -76 4 1227 219 283 33 0 chr11 84188631 84188691 -37655165 + B4A SINE B4 84 145 -147 4 1227 448 237 10 1 chr11 84188641 84188740 -37655116 + B1F1 SINE Alu 10 109 -11 4 1227 230 203 136 0 chr11 84189313 84189372 -37654484 - L1MB2 LINE L1 -1 6170 6104 4 1227 26 0 0 0 chr11 84189978 84190004 -37653852 + AT_rich Low_complexity Low_complexity 1 26 0 4 1227 435 238 99 0 chr11 84191411 84191512 -37652344 + PB1D10 SINE Alu 5 115 -2 4 1227 21 36 0 0 chr11 84191609 84191637 -37652219 + AT_rich Low_complexity Low_complexity 1 28 0 4 1227 214 209 47 0 chr11 84191701 84191744 -37652112 + (CGTG)n Simple_repeat Simple_repeat 3 47 0 4 1227 482 133 21 32 chr11 84191876 84191969 -37651887 - PB1D9 SINE Alu 0 120 29 4 1227 21 57 0 0 chr11 84193175 84193210 -37650646 + AT_rich Low_complexity Low_complexity 1 35 0 4 1227 569 248 0 75 chr11 84193309 84193470 -37650386 - B1F SINE Alu 0 149 1 4 1227 25 0 0 0 chr11 84194527 84194552 -37649304 + AT_rich Low_complexity Low_complexity 1 25 0 4 1227 619 202 170 27 chr11 84194613 84194801 -37649055 - B3 SINE B2 0 216 2 4 1227 291 140 0 0 chr11 84197403 84197453 -37646403 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1227 659 152 0 0 chr11 84197984 84198096 -37645760 + B1_Mus2 SINE Alu 30 141 -6 4 1227 252 59 0 0 chr11 84199964 84199998 -37643858 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1227 474 231 353 0 chr11 84200719 84200875 -37642981 + B3 SINE B2 2 212 -4 4 1227 675 0 0 0 chr11 84201209 84201284 -37642572 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 4 1227 411 21 0 0 chr11 84201362 84201410 -37642446 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1227 684 265 46 15 chr11 84201635 84201838 -37642018 + B3 SINE B2 1 216 0 4 1227 468 0 0 0 chr11 84202226 84202278 -37641578 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1227 200 348 134 0 chr11 84203074 84203186 -37640670 + MIRb SINE MIR 23 149 -119 4 1227 249 294 74 16 chr11 84203742 84203863 -37639993 + MIRb SINE MIR 64 191 -77 4 1227 616 326 0 0 chr11 84206169 84206313 -37637543 - RSINE1 SINE B4 -19 146 3 4 1227 198 231 0 0 chr11 84207997 84208036 -37635820 + MIRc SINE MIR 116 154 -114 4 1227 404 198 188 0 chr11 84208078 84208179 -37635677 + PB1D9 SINE Alu 1 120 0 4 1227 230 136 23 0 chr11 84208183 84208227 -37635629 + GA-rich Low_complexity Low_complexity 2 46 0 4 1227 337 189 180 0 chr11 84210341 84210452 -37633404 - B1F1 SINE Alu -17 132 2 4 1227 670 80 9 35 chr11 84212154 84212168 -37631688 - B1_Mus1 SINE Alu -34 114 100 4 1227 1169 122 23 0 chr11 84212168 84212340 -37631516 - B2_Mm2 SINE B2 -19 176 1 4 1227 670 80 9 35 chr11 84212340 84212441 -37631415 - B1_Mus1 SINE Alu -49 99 2 4 1227 300 227 113 0 chr11 84215993 84216090 -37627766 + PB1D10 SINE Alu 1 108 -9 4 1227 347 226 43 12 chr11 84217029 84217146 -37626710 + PB1D7 SINE Alu 11 131 -18 4 1227 558 29 0 0 chr11 84217328 84217396 -37626460 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1227 341 247 24 36 chr11 84217407 84217491 -37626365 - RSINE1 SINE B4 -80 85 3 4 1227 421 267 11 0 chr11 84218168 84218258 -37625598 + ID_B1 SINE B4 113 203 -21 4 1227 1014 175 59 15 chr11 84218675 84218878 -37624978 + B3 SINE B2 1 212 -4 4 1227 233 202 162 12 chr11 84218954 84219034 -37624822 + PB1D9 SINE Alu 28 119 -1 4 1227 682 216 102 12 chr11 84219425 84219620 -37624236 + B3 SINE B2 1 193 -2 4 1227 544 138 53 0 chr11 84219634 84219728 -37624128 - ORR1B1-int LTR MaLR -18 1491 1393 4 1227 236 190 0 9 chr11 84219725 84219775 -37624081 + B1F1 SINE Alu 58 105 -44 4 1227 875 111 82 0 chr11 84219980 84220115 -37623741 + B1_Mus1 SINE Alu 1 146 -2 4 1227 189 0 0 0 chr11 84220115 84220136 -37623720 + (TAA)n Simple_repeat Simple_repeat 2 22 0 4 1227 212 307 19 38 chr11 84220167 84220272 -37623584 + ID_B1 SINE B4 76 178 -46 4 1227 1141 189 19 9 chr11 84220306 84220520 -37623336 + B3 SINE B2 1 216 0 4 1227 385 252 135 25 chr11 84220768 84220931 -37622925 + B3 SINE B2 8 188 -28 4 1227 1700 26 0 0 chr11 84220999 84221191 -37622665 + B2_Mm1a SINE B2 2 193 0 4 1227 548 215 145 8 chr11 84221360 84221491 -37622365 + B1_Mur1 SINE Alu 1 149 0 4 1227 259 279 203 16 chr11 84221569 84221751 -37622105 + L1M4 LINE L1 3804 4019 -2127 4 1227 294 129 0 0 chr11 84221766 84221828 -37622028 + (CTG)n Simple_repeat Simple_repeat 1 62 0 4 1227 396 238 137 8 chr11 84221926 84222057 -37621799 + B1F SINE Alu 2 149 0 4 1227 339 244 11 11 chr11 84222335 84222422 -37621434 - PB1 SINE Alu 0 127 41 4 1227 364 181 629 0 chr11 84222495 84222627 -37621229 + ID_B1 SINE B4 7 221 -3 4 1227 1095 63 35 0 chr11 84222880 84223022 -37620834 + B1_Mus2 SINE Alu 1 147 0 4 1227 435 163 0 34 chr11 84223072 84223161 -37620695 + PB1D10 SINE Alu 30 115 -2 4 1227 251 252 184 87 chr11 84223207 84223301 -37620555 + L1M4 LINE L1 5058 5142 -1004 4 1227 669 176 8 0 chr11 84223301 84223420 -37620436 - PB1D9 SINE Alu 0 120 1 4 1227 251 252 184 87 chr11 84223420 84223634 -37620222 + L1M4 LINE L1 5143 5396 -750 4 1227 619 201 204 11 chr11 84224175 84224356 -37619500 + B3 SINE B2 1 216 0 4 1227 378 0 0 0 chr11 84224774 84224816 -37619040 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1227 249 33 0 0 chr11 84224864 84224894 -37618962 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1227 378 0 0 0 chr11 84226629 84226671 -37617185 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1227 1114 165 48 14 chr11 84227879 84228088 -37615768 - B3 SINE B2 0 216 1 4 1227 1195 54 0 0 chr11 84228117 84228264 -37615592 + B1_Mus1 SINE Alu 2 148 0 4 1227 437 229 100 0 chr11 84228313 84228440 -37615416 - B3A SINE B2 -53 142 2 4 1227 207 0 0 0 chr11 84229363 84229386 -37614470 + (CCCCG)n Simple_repeat Simple_repeat 4 26 0 4 1227 342 0 0 0 chr11 84229408 84229446 -37614410 + (TCC)n Simple_repeat Simple_repeat 2 39 0 4 1227 918 133 11 6 chr11 84229526 84229700 -37614156 + CT-rich Low_complexity Low_complexity 1 175 0 4 1227 782 108 18 0 chr11 84229748 84229859 -37613997 + PB1D9 SINE Alu 1 113 -7 4 1227 252 0 0 0 chr11 84229859 84229887 -37613969 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 1227 307 247 188 10 chr11 84230062 84230283 -37613573 - L1MA7 LINE L1 -307 5993 5725 4 1227 946 74 12 18 chr11 84230291 84230456 -37613400 + (TC)n Simple_repeat Simple_repeat 1 164 0 4 1227 323 135 0 0 chr11 84230463 84230515 -37613341 - B1F SINE Alu -78 71 20 4 1227 982 91 28 14 chr11 84231019 84231164 -37612692 - B1_Mus2 SINE Alu 0 147 1 4 1227 1710 26 0 0 chr11 84231184 84231377 -37612479 - B2_Mm1a SINE B2 0 193 1 4 1227 248 273 141 0 chr11 84231404 84231503 -37612353 - B1_Mur3 SINE Alu -36 113 1 4 1227 485 221 0 36 chr11 84231503 84231620 -37612236 - PB1D10 SINE Alu -28 121 9 4 1227 215 266 125 0 chr11 84231747 84231811 -37612045 - ID4_ SINE ID -9 74 3 4 1227 507 229 138 7 chr11 84231822 84231966 -37611890 - B3A SINE B2 -5 193 47 4 1227 286 197 61 0 chr11 84231991 84232057 -37611799 - B3 SINE B2 -76 140 71 4 1227 1199 74 0 0 chr11 84232285 84232433 -37611423 - B1_Mus1 SINE Alu 0 148 1 4 1227 1293 76 25 61 chr11 84232531 84232573 -37611283 + B2_Mm1t SINE B2 2 34 -159 4 1227 1655 36 0 0 chr11 84232573 84232765 -37611091 - B2_Mm1a SINE B2 -1 192 1 4 1227 1293 76 25 61 chr11 84232765 84232903 -37610953 + B2_Mm1t SINE B2 35 171 -22 4 1227 1238 41 0 0 chr11 84232903 84233049 -37610807 + B1_Mus2 SINE Alu 2 147 0 4 1227 1293 76 25 61 chr11 84233049 84233064 -37610792 + B2_Mm1t SINE B2 172 191 -2 4 1227 248 59 0 0 chr11 84233090 84233124 -37610732 + B2_Mm2 SINE B2 64 97 -98 4 1227 264 30 0 0 chr11 84233146 84233179 -37610677 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 1227 27 49 0 0 chr11 84233181 84233222 -37610634 + AT_rich Low_complexity Low_complexity 1 41 0 4 1227 829 156 0 15 chr11 84233222 84233359 -37610497 - B1_Mus1 SINE Alu -13 135 1 4 1227 252 0 0 0 chr11 84233745 84233773 -37610083 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1227 350 205 145 0 chr11 84234985 84235068 -37608788 - B1_Mm SINE Alu -7 140 46 4 1227 354 208 14 0 chr11 84235194 84235266 -37608590 - ID4 SINE ID -10 73 1 5 1227 407 284 35 0 chr11 84235525 84235666 -37608190 - L1MA7 LINE L1 -387 5904 5759 5 1227 467 309 85 11 chr11 84235660 84235923 -37607933 + L1M2 LINE L1 5309 5590 -710 5 1227 483 96 0 0 chr11 84236004 84236087 -37607769 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1227 275 290 112 66 chr11 84237106 84237302 -37606554 + B4A SINE B4 2 206 -86 5 1227 492 294 149 0 chr11 84237412 84237626 -37606230 - B4A SINE B4 -41 251 6 5 1227 329 271 71 20 chr11 84237654 84237752 -37606104 - PB1D9 SINE Alu -17 103 1 5 1227 302 307 0 0 chr11 84237690 84237765 -37606091 - B4A SINE B4 -145 147 73 5 1227 494 221 20 99 chr11 84237788 84237939 -37605917 + B3A SINE B2 1 139 -59 5 1227 239 192 39 0 chr11 84239617 84239669 -37604187 - RSINE1 SINE B4 -12 153 100 5 1227 389 255 0 50 chr11 84240755 84240854 -37603002 + PB1D10 SINE Alu 3 96 -21 5 1227 688 275 29 17 chr11 84241470 84241644 -37602212 + B3A SINE B2 1 176 -22 5 1227 1385 115 5 0 chr11 84241753 84241944 -37601912 + B2_Mm1t SINE B2 2 193 0 5 1227 234 0 0 0 chr11 84243870 84243896 -37599960 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1227 21 0 0 0 chr11 84243922 84243943 -37599913 + AT_rich Low_complexity Low_complexity 1 21 0 5 1227 406 287 6 128 chr11 84244591 84244747 -37599109 - B1F SINE Alu -10 139 3 5 1227 374 0 22 0 chr11 84246151 84246197 -37597659 + (CAG)n Simple_repeat Simple_repeat 3 49 0 5 1227 936 194 47 61 chr11 84249815 84250029 -37593827 - B3 SINE B2 -5 211 1 5 1227 3033 18 9 0 chr11 84250293 84250636 -37593220 + ORR1A0 LTR MaLR 1 346 0 5 1227 423 0 0 0 chr11 84251049 84251096 -37592760 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1227 260 303 154 0 chr11 84251698 84251886 -37591970 - MER2 DNA MER2_type -49 296 80 5 1227 304 262 12 0 chr11 84251912 84251992 -37591864 - ID4 SINE ID -2 81 1 5 1227 275 309 12 0 chr11 84252069 84252153 -37591703 - RSINE1 SINE B4 -2 163 79 5 1227 620 252 66 7 chr11 84252181 84252333 -37591523 - RSINE1 SINE B4 -4 161 1 5 1227 293 262 36 100 chr11 84252350 84252490 -37591366 - B4A SINE B4 -119 173 43 5 1227 494 194 10 0 chr11 84252628 84252726 -37591130 + PB1D10 SINE Alu 19 117 0 5 1227 313 211 126 105 chr11 84252964 84253107 -37590749 + B1_Mur2 SINE Alu 4 149 0 5 1227 411 319 0 9 chr11 84253643 84253757 -37590099 - PB1D10 SINE Alu -4 113 1 5 1227 608 220 70 7 chr11 84253863 84254005 -37589851 + ID_B1 SINE B4 3 153 -71 5 1227 227 284 92 31 chr11 84253954 84254052 -37589804 + PB1D10 SINE Alu 14 117 0 5 1227 254 143 250 0 chr11 84254637 84254693 -37589163 + B1_Mur1 SINE Alu 73 142 -7 5 1227 484 258 140 25 chr11 84254710 84254945 -37588911 + L1MC4 LINE L1 6889 7150 -892 5 1227 685 202 16 0 chr11 84254958 84255087 -37588769 - B1_Mur2 SINE Alu -7 142 12 5 1227 267 103 0 0 chr11 84255106 84255145 -37588711 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5 1227 216 0 0 0 chr11 84255145 84255169 -37588687 + (TAG)n Simple_repeat Simple_repeat 3 26 0 5 1227 845 175 14 0 chr11 84255169 84255312 -37588544 - B1_Mus2 SINE Alu 0 147 3 5 1227 397 284 97 0 chr11 84255345 84255479 -37588377 + B1F SINE Alu 3 149 0 5 1227 494 246 0 17 chr11 84255503 84255619 -37588237 + PB1D9 SINE Alu 6 119 -1 5 1227 419 160 67 0 chr11 84256374 84256449 -37587407 + B1_Mus2 SINE Alu 58 137 -10 5 1227 297 0 0 0 chr11 84256449 84256482 -37587374 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1227 305 289 78 0 chr11 84256993 84257083 -37586773 - B1F1 SINE Alu -51 98 2 5 1227 339 246 29 109 chr11 84257501 84257555 -37586301 - MIR SINE MIR -108 154 102 5 1227 1351 101 11 0 chr11 84257555 84257744 -37586112 + B2_Mm1t SINE B2 2 192 -1 5 1227 339 246 29 109 chr11 84257744 84257826 -37586030 - MIR SINE MIR -161 101 29 5 1227 244 266 38 0 chr11 84258052 84258131 -37585725 - PB1D10 SINE Alu -15 102 21 5 1227 270 0 0 0 chr11 84258229 84258259 -37585597 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1227 443 247 35 34 chr11 84258436 84258614 -37585242 - B3A SINE B2 -4 191 12 5 1227 225 270 53 26 chr11 84258947 84259023 -37584833 + PB1D10 SINE Alu 4 81 -36 5 1227 456 189 179 0 chr11 84259619 84259714 -37584142 - PB1D9 SINE Alu -8 112 1 5 1227 429 313 58 140 chr11 84259782 84259953 -37583903 - RSINE1 SINE B4 -6 159 3 5 1227 716 216 104 6 chr11 84259977 84260159 -37583697 - B3 SINE B2 -7 209 10 5 1227 588 150 17 34 chr11 84260327 84260444 -37583412 - B1_Mur2 SINE Alu 0 149 35 5 1227 2638 123 35 20 chr11 84260445 84260851 -37583005 + RMER17C-int LTR ERVK 2826 3237 -1 5 1227 1928 147 53 23 chr11 84260851 84261053 -37582803 + RMER17C LTR ERVK 1 203 -207 5 1227 573 55 0 0 chr11 84261053 84261126 -37582730 + (TTCTC)n Simple_repeat Simple_repeat 5 77 0 5 1227 1928 147 53 23 chr11 84261126 84261321 -37582535 + RMER17C LTR ERVK 204 410 0 5 1227 1113 66 0 0 chr11 84261411 84261548 -37582308 + B1_Mus1 SINE Alu 2 138 -10 5 1227 399 21 0 0 chr11 84263359 84263407 -37580449 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 5 1227 1169 64 0 0 chr11 84263410 84263567 -37580289 - B2_Mm2 SINE B2 -38 157 1 5 1227 28 0 0 0 chr11 84264501 84264529 -37579327 + AT_rich Low_complexity Low_complexity 1 28 0 5 1227 258 196 20 0 chr11 84265063 84265114 -37578742 - L1M4 LINE L1 -784 5362 5311 5 1227 685 223 115 60 chr11 84265131 84265331 -37578525 + B3 SINE B2 5 215 -1 5 1227 728 230 152 40 chr11 84265413 84265716 -37578140 - L1M4 LINE L1 -942 5204 4868 5 1227 370 241 90 27 chr11 84265989 84266100 -37577756 + ID_B1 SINE B4 102 219 -5 5 1227 625 157 16 40 chr11 84266217 84266343 -37577513 + B1_Mur2 SINE Alu 7 129 -20 5 1227 2032 207 75 30 chr11 84266399 84266893 -37576963 - RMER1C Other Other 0 1342 827 5 1227 240 149 0 0 chr11 84267223 84267270 -37576586 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1227 303 148 74 0 chr11 84267279 84267333 -37576523 - RMER1C Other Other -1107 235 178 5 1227 188 376 9 0 chr11 84268348 84268457 -37575399 + L2 LINE L2 990 1099 -2320 5 1227 1283 213 117 21 chr11 84268678 84269004 -37574852 - L1_Rod LINE L1 -25 5822 5466 5 1227 325 279 0 36 chr11 84269511 84269595 -37574261 - ID4 SINE ID -60 92 12 5 1227 611 275 7 26 chr11 84269792 84269945 -37573911 - RSINE1 SINE B4 -2 163 14 5 1227 821 236 99 8 chr11 84270040 84270292 -37573564 - MTD LTR MaLR -15 404 130 5 1227 623 230 99 68 chr11 84270347 84270538 -37573318 + B3A SINE B2 1 197 -1 5 1227 441 0 0 0 chr11 84270553 84270602 -37573254 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1227 243 79 0 0 chr11 84270608 84270646 -37573210 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 5 1227 390 228 206 51 chr11 84270747 84271039 -37572817 + L2a LINE L2 2500 2836 -583 5 1227 256 318 47 13 chr11 84271115 84271265 -37572591 + L2a LINE L2 2988 3142 -284 5 1227 305 307 50 0 chr11 84271410 84271511 -37572345 + MER3 DNA MER1_type 31 136 -73 5 1227 261 0 0 0 chr11 84271511 84271540 -37572316 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 5 1227 577 232 50 7 chr11 84271562 84271701 -37572155 + B1F SINE Alu 5 149 0 5 1227 288 243 13 39 chr11 84271862 84271939 -37571917 - PB1D10 SINE Alu 0 117 43 5 1227 466 222 101 9 chr11 84272088 84272197 -37571659 - B1_Mur2 SINE Alu -13 136 18 5 1227 446 259 9 9 chr11 84272218 84272331 -37571525 - PB1D9 SINE Alu -7 113 1 5 1227 22 0 0 0 chr11 84272914 84272936 -37570920 + AT_rich Low_complexity Low_complexity 1 22 0 5 1227 711 181 55 8 chr11 84273150 84273278 -37570578 + B1_Mur1 SINE Alu 2 135 -14 5 1227 371 246 52 43 chr11 84273356 84273471 -37570385 + PB1D10 SINE Alu 2 117 0 5 1227 29 0 0 0 chr11 84273885 84273914 -37569942 + AT_rich Low_complexity Low_complexity 1 29 0 5 1227 210 71 0 0 chr11 84275214 84275242 -37568614 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1227 1315 91 11 0 chr11 84275339 84275515 -37568341 + B2_Mm1t SINE B2 2 179 -14 5 1227 348 125 19 17 chr11 84275580 84275653 -37568203 + B2_Mm2 SINE B2 46 123 -75 5 1227 432 0 0 0 chr11 84275758 84275806 -37568050 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1227 291 196 33 3 chr11 84275871 84275944 -37567912 + RSINE1 SINE B4 4 82 -210 5 1227 514 264 39 51 chr11 84276032 84276188 -37567668 + RSINE1 SINE B4 3 156 -9 5 1227 352 215 13 0 chr11 84276254 84276333 -37567523 + PB1D10 SINE Alu 24 103 -14 5 1227 231 36 0 0 chr11 84276333 84276361 -37567495 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 5 1227 1166 207 89 18 chr11 84276389 84276669 -37567187 + ORR1D2 LTR MaLR 71 370 0 5 1227 1171 38 0 24 chr11 84276694 84276929 -37566927 + L1Md_F3 LINE L1 6424 6584 0 5 1227 543 203 39 110 chr11 84276931 84276970 -37566886 + B1_Mur4 SINE Alu 1 30 -120 5 1227 1346 91 0 26 chr11 84276970 84277161 -37566695 + B2_Mm2 SINE B2 1 186 -9 5 1227 543 203 39 110 chr11 84277161 84277276 -37566580 + B1_Mur4 SINE Alu 31 144 -6 5 1227 315 0 0 0 chr11 84277276 84277311 -37566545 + (TGGA)n Simple_repeat Simple_repeat 4 38 0 5 1227 297 0 0 0 chr11 84277658 84277691 -37566165 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1227 212 270 32 0 chr11 84278118 84278181 -37565675 + G-rich Low_complexity Low_complexity 2 66 0 5 1227 209 173 19 19 chr11 84278816 84278869 -37564987 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 153 783 227 31 36 chr11 84279245 84279437 -37564419 + B3A SINE B2 1 191 -7 5 1228 262 356 11 0 chr11 84279921 84280008 -37563848 + PB1D10 SINE Alu 30 117 0 5 1228 916 248 91 0 chr11 84280175 84280373 -37563483 + B3 SINE B2 1 216 0 6 1228 243 0 0 0 chr11 84280379 84280406 -37563450 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1228 325 257 54 62 chr11 84280573 84280685 -37563171 + PB1D7 SINE Alu 10 120 0 6 1228 347 159 0 16 chr11 84281207 84281271 -37562585 - B1_Mus2 SINE Alu -1 146 84 6 1228 225 301 242 9 chr11 84281423 84281638 -37562218 + L1MC LINE L1 5534 5798 -2084 6 1228 590 127 58 10 chr11 84281649 84281752 -37562104 - B1_Mur3 SINE Alu -1 148 41 6 1228 249 261 182 0 chr11 84281928 84282016 -37561840 + Lx8 LINE L1 7176 7279 -194 6 1228 1423 74 30 50 chr11 84282156 84282355 -37561501 + B2_Mm2 SINE B2 1 195 0 6 1228 189 0 0 0 chr11 84282400 84282421 -37561435 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1228 288 0 0 0 chr11 84282421 84282452 -37561404 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1228 567 213 149 66 chr11 84282488 84282669 -37561187 + B3A SINE B2 1 196 -2 6 1228 240 228 0 0 chr11 84282832 84282889 -37560967 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 6 1228 347 262 179 23 chr11 84282941 84283017 -37560839 + Lx9 LINE L1 7342 7419 -225 6 1228 405 0 0 0 chr11 84283017 84283062 -37560794 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1228 347 262 179 23 chr11 84283062 84283247 -37560609 + Lx9 LINE L1 7420 7644 0 6 1228 21 0 0 0 chr11 84283247 84283268 -37560588 + AT_rich Low_complexity Low_complexity 1 21 0 6 1228 1104 209 5 27 chr11 84283275 84283496 -37560360 + B3 SINE B2 1 216 0 6 1228 593 191 143 15 chr11 84283498 84283631 -37560225 + B1_Mur4 SINE Alu 1 150 0 6 1228 319 189 25 63 chr11 84283750 84283829 -37560027 + ID2 SINE ID 5 80 -3 6 1228 459 0 0 0 chr11 84284538 84284589 -37559267 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1228 1128 216 34 0 chr11 84284937 84285145 -37558711 + B3 SINE B2 2 216 0 6 1228 337 276 13 0 chr11 84285653 84285729 -37558127 + MER2B DNA MER2_type 260 336 0 6 1228 3718 15 2 2 chr11 84285919 84286315 -37557541 - MTA_Mm LTR MaLR 0 396 1 6 1228 569 270 225 45 chr11 84287190 84287434 -37556422 + B4A SINE B4 1 288 -4 6 1228 216 0 0 0 chr11 84287517 84287541 -37556315 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1228 1050 201 14 28 chr11 84287768 84287983 -37555873 + ID_B1 SINE B4 8 219 -5 6 1228 971 146 21 7 chr11 84288008 84288153 -37555703 + B1_Mur4 SINE Alu 2 148 -2 6 1228 270 0 0 0 chr11 84289338 84289368 -37554488 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1228 989 143 0 33 chr11 84289494 84289646 -37554210 + B1_Mm SINE Alu 1 147 0 6 1228 226 311 20 109 chr11 84289819 84289860 -37553996 - ID_B1 SINE B4 -103 121 30 6 1228 232 305 0 17 chr11 84289860 84289920 -37553936 - BC1_Mm scRNA scRNA -65 87 29 6 1228 1100 104 0 27 chr11 84290011 84290159 -37553697 + B1_Mus2 SINE Alu 2 145 -2 6 1228 342 0 0 0 chr11 84290159 84290197 -37553659 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1228 6777 177 79 40 chr11 84290204 84291620 -37552236 + Lx9 LINE L1 5862 7431 -213 6 1228 252 0 0 0 chr11 84291620 84291648 -37552208 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1228 6777 170 86 39 chr11 84291648 84291842 -37552014 + Lx9 LINE L1 7432 7643 -1 6 1228 525 266 9 0 chr11 84291890 84292003 -37551853 + PB1D10 SINE Alu 1 114 -3 6 1228 291 233 20 97 chr11 84292051 84292246 -37551610 + RMER17C LTR ERVK 96 275 -135 6 1228 337 262 89 44 chr11 84292335 84292515 -37551341 + L1MB3 LINE L1 5996 6183 0 6 1228 658 171 31 54 chr11 84292791 84292921 -37550935 + B3 SINE B2 88 214 -2 6 1228 209 159 0 22 chr11 84293056 84293101 -37550755 + CT-rich Low_complexity Low_complexity 3 46 0 6 1228 955 128 14 0 chr11 84293101 84293242 -37550614 - B1_Mus2 SINE Alu 0 147 5 6 1228 663 260 0 30 chr11 84293671 84293806 -37550050 + RSINE1 SINE B4 3 133 -32 6 1228 28 0 0 0 chr11 84296908 84296936 -37546920 + AT_rich Low_complexity Low_complexity 1 28 0 6 1228 1463 84 21 0 chr11 84297331 84297521 -37546335 - B2_Mm2 SINE B2 -1 194 1 6 1228 571 123 0 0 chr11 84297565 84297646 -37546210 - B1_Mus2 SINE Alu -5 142 62 6 1228 215 163 47 0 chr11 84297845 84297888 -37545968 - ID SINE ID -179 45 1 6 1228 212 200 55 91 chr11 84298292 84298347 -37545509 - PB1D10 SINE Alu 0 117 65 6 1228 559 248 30 15 chr11 84298299 84298434 -37545422 - ID_B1 SINE B4 -2 222 86 6 1228 244 178 0 61 chr11 84298582 84298648 -37545208 - MIR SINE MIR -65 197 136 6 1228 887 192 220 0 chr11 84298708 84298885 -37544971 - B3 SINE B2 0 216 1 6 1228 2981 51 3 25 chr11 84298910 84299272 -37544584 - L1_Mus1 LINE L1 0 6567 6214 6 1228 328 250 29 0 chr11 84299363 84299431 -37544425 + ID4 SINE ID 4 73 -10 6 1228 888 86 0 0 chr11 84299551 84299668 -37544188 - B2_Mm2 SINE B2 -78 117 1 6 1228 29 28 0 0 chr11 84299843 84299879 -37543977 + AT_rich Low_complexity Low_complexity 1 36 0 6 1228 858 50 244 0 chr11 84299904 84300023 -37543833 + B1_Mus1 SINE Alu 1 148 0 6 1228 203 143 0 39 chr11 84300023 84300074 -37543782 + GA-rich Low_complexity Low_complexity 2 50 0 6 1228 562 282 82 0 chr11 84300078 84300248 -37543608 - B3A SINE B2 -14 184 1 6 1228 300 288 25 0 chr11 84300635 84300715 -37543141 + ID2 SINE ID 2 83 0 6 1228 25 0 0 0 chr11 84300724 84300749 -37543107 + AT_rich Low_complexity Low_complexity 1 25 0 6 1228 895 140 66 0 chr11 84301406 84301542 -37542314 + B1_Mus1 SINE Alu 3 147 -1 6 1228 730 300 33 0 chr11 84301721 84301901 -37541955 - B3A SINE B2 -5 193 8 6 1228 419 129 86 0 chr11 84301897 84301967 -37541889 + B1_Mur4 SINE Alu 61 136 -14 6 1228 291 54 0 0 chr11 84301983 84302020 -37541836 + (CCTA)n Simple_repeat Simple_repeat 1 37 0 6 1228 280 312 156 0 chr11 84302118 84302214 -37541642 + PB1D10 SINE Alu 7 117 0 6 1228 185 258 15 0 chr11 84302220 84302286 -37541570 + GA-rich Low_complexity Low_complexity 3 69 0 6 1228 747 285 110 53 chr11 84302376 84302831 -37541025 + L1ME4a LINE L1 5346 5826 -298 6 1228 4404 52 9 6 chr11 84302831 84303356 -37540500 + L1Md_F2 LINE L1 6056 6582 0 6 1228 1033 230 25 5 chr11 84303726 84303927 -37539929 + B3 SINE B2 1 205 -11 6 1228 279 93 0 0 chr11 84303947 84303990 -37539866 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1228 1394 109 5 5 chr11 84305867 84306061 -37537795 + B2_Mm2 SINE B2 2 195 0 6 1228 680 250 7 7 chr11 84306722 84306863 -37536993 - B1_Mur3 SINE Alu -8 141 1 6 1228 492 223 58 0 chr11 84306893 84306996 -37536860 + PB1D10 SINE Alu 2 110 -7 6 1228 314 221 11 125 chr11 84307061 84307106 -37536750 + ID SINE ID 19 54 -170 6 1228 1296 55 0 0 chr11 84307106 84307252 -37536604 + B1_Mm SINE Alu 1 146 -1 6 1228 237 33 0 0 chr11 84307252 84307282 -37536574 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1228 314 221 11 125 chr11 84307282 84307323 -37536533 + ID_B1 SINE B4 55 95 -129 6 1228 1103 116 69 6 chr11 84307427 84307601 -37536255 + B2_Mm2 SINE B2 2 186 -9 6 1228 738 235 98 31 chr11 84307694 84307887 -37535969 + B3 SINE B2 5 210 -6 6 1228 395 226 10 0 chr11 84307889 84307991 -37535865 + (TA)n Simple_repeat Simple_repeat 1 103 0 6 1228 216 0 0 0 chr11 84308025 84308049 -37535807 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1228 458 229 76 0 chr11 84308380 84308485 -37535371 + PB1D10 SINE Alu 3 115 -2 6 1228 180 0 0 0 chr11 84308788 84308808 -37535048 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1228 942 120 6 107 chr11 84308808 84308967 -37534889 - B1_Mus1 SINE Alu -1 147 5 6 1228 222 37 0 0 chr11 84309850 84309877 -37533979 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1228 1259 236 141 55 chr11 84310553 84311028 -37532828 - L1ME1 LINE L1 -160 6019 5504 6 1228 560 258 68 8 chr11 84311185 84311318 -37532538 - RSINE1 SINE B4 -10 155 15 6 1228 476 277 56 106 chr11 84311349 84311557 -37532299 - L1MD LINE L1 -847 5299 5121 6 1228 982 235 29 19 chr11 84311557 84311765 -37532091 - B3 SINE B2 -6 210 1 6 1228 476 277 56 106 chr11 84311765 84311886 -37531970 - L1MD LINE L1 -1026 5120 4993 6 1228 1286 65 40 23 chr11 84311886 84311904 -37531952 - B2_Mm1t SINE B2 -17 176 161 6 1228 243 0 0 0 chr11 84311904 84311931 -37531925 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 1228 1286 65 40 23 chr11 84311931 84312085 -37531771 - B2_Mm1t SINE B2 -33 160 1 6 1228 476 277 56 106 chr11 84312085 84312130 -37531726 - L1MD LINE L1 -1154 4992 4943 6 1228 1312 130 103 5 chr11 84312171 84312365 -37531491 - B3 SINE B2 -3 213 1 6 1228 308 260 200 9 chr11 84312777 84312882 -37530974 + RSINE1 SINE B4 8 132 -33 6 1228 777 165 45 0 chr11 84313028 84313161 -37530695 + B1_Mus1 SINE Alu 10 148 0 6 1228 442 104 0 0 chr11 84313429 84313496 -37530360 + B1_Mur3 SINE Alu 82 148 -1 6 1228 615 116 18 9 chr11 84313504 84313617 -37530239 + (GGAGA)n Simple_repeat Simple_repeat 3 116 0 6 1228 583 170 188 0 chr11 84313629 84313741 -37530115 + B1_Mur4 SINE Alu 1 133 -17 6 1228 713 160 77 30 chr11 84313830 84313998 -37529858 + B2_Mm2 SINE B2 1 176 -19 6 1228 680 234 27 7 chr11 84314188 84314334 -37529522 + B1F2 SINE Alu 1 149 0 6 1228 288 364 54 0 chr11 84314338 84314467 -37529389 + B4A SINE B4 9 144 -148 6 1228 493 290 35 48 chr11 84314494 84314639 -37529217 + ID_B1 SINE B4 82 224 0 6 1228 651 215 8 16 chr11 84314922 84315045 -37528811 - B1_Mus2 SINE Alu -20 127 6 6 1228 377 326 73 15 chr11 84315045 84315057 -37528799 - B4 SINE B4 -69 221 79 6 1228 612 248 20 40 chr11 84315109 84315260 -37528596 + B1_Mur4 SINE Alu 3 150 0 7 1228 1291 34 7 0 chr11 84315279 84315425 -37528431 + B1_Mus2 SINE Alu 1 147 0 7 1228 509 284 46 33 chr11 84315565 84315718 -37528138 - RSINE1 SINE B4 -9 156 2 7 1228 770 222 60 12 chr11 84315781 84315966 -37527890 + B3A SINE B2 14 198 0 7 1228 734 201 34 27 chr11 84315997 84316145 -37527711 + B1_Mur2 SINE Alu 1 149 0 7 1228 367 175 16 0 chr11 84316668 84316731 -37527125 + tRNA-Ala-GCY_ tRNA tRNA 4 67 -8 7 1228 370 174 29 0 chr11 84316773 84316842 -37527014 - B1_Mur2 SINE Alu -24 125 55 7 1228 1003 253 10 0 chr11 84316888 84317082 -37526774 + B3 SINE B2 2 197 -19 7 1228 832 226 19 73 chr11 84317848 84318053 -37525803 + B3A SINE B2 2 195 -3 7 1228 1080 105 48 42 chr11 84318055 84318244 -37525612 + B2_Mm2 SINE B2 2 191 -4 7 1228 1310 41 0 0 chr11 84318246 84318393 -37525463 + B1_Mus2 SINE Alu 1 147 0 7 1228 37 39 0 0 chr11 84318393 84318444 -37525412 + AT_rich Low_complexity Low_complexity 1 51 0 7 1228 487 291 30 38 chr11 84318528 84318660 -37525196 + RSINE1 SINE B4 3 133 -32 7 1228 232 246 329 28 chr11 84319005 84319150 -37524706 - MIRb SINE MIR -36 232 44 7 1228 530 250 45 15 chr11 84319169 84319303 -37524553 + ID_B1 SINE B4 87 224 0 7 1228 403 267 11 0 chr11 84319344 84319434 -37524422 + ID_B1 SINE B4 125 215 -9 7 1228 393 213 193 9 chr11 84319485 84319594 -37524262 + B1_Mur1 SINE Alu 21 149 0 7 1228 1205 74 0 7 chr11 84319804 84319953 -37523903 + B1_Mus1 SINE Alu 1 148 0 7 1228 207 139 0 0 chr11 84319968 84320004 -37523852 + (GGA)n Simple_repeat Simple_repeat 3 38 0 7 1228 1254 62 6 0 chr11 84320339 84320500 -37523356 + B2_Mm1t SINE B2 1 162 -31 7 1228 258 105 0 0 chr11 84320500 84320538 -37523318 + (TAAG)n Simple_repeat Simple_repeat 1 38 0 7 1228 29 60 0 0 chr11 84320598 84320648 -37523208 + AT_rich Low_complexity Low_complexity 1 50 0 7 1228 454 218 80 18 chr11 84320967 84321079 -37522777 + PB1D9 SINE Alu 2 120 0 7 1228 218 262 222 32 chr11 84321461 84321587 -37522269 + MIRm SINE MIR 10 159 -117 7 1228 568 85 392 9 chr11 84321598 84321705 -37522151 + B1_Mus1 SINE Alu 1 148 0 7 1228 697 203 21 21 chr11 84322020 84322161 -37521695 + B1_Mus2 SINE Alu 7 147 0 7 1228 1320 40 0 0 chr11 84322190 84322338 -37521518 + B1_Mus1 SINE Alu 1 148 0 7 1228 24 0 0 0 chr11 84322343 84322367 -37521489 + AT_rich Low_complexity Low_complexity 1 24 0 7 1228 582 37 161 0 chr11 84322491 84322572 -37521284 + B2_Mm1t SINE B2 1 94 -99 7 1228 511 75 0 13 chr11 84322579 84322665 -37521191 + B2_Mm1t SINE B2 36 116 -100 7 1228 276 59 0 0 chr11 84322641 84322675 -37521181 + B2_Mm1t SINE B2 37 70 -123 7 1228 1245 31 25 6 chr11 84322675 84322836 -37521020 + B2_Mm1t SINE B2 30 193 0 7 1228 990 89 96 0 chr11 84322855 84322990 -37520866 + B1_Mus1 SINE Alu 1 148 0 7 1228 1471 84 11 0 chr11 84324344 84324534 -37519322 + B2_Mm1a SINE B2 1 192 -1 7 1228 198 0 0 0 chr11 84324546 84324568 -37519288 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1228 554 216 73 15 chr11 84324844 84324980 -37518876 - B1F SINE Alu -1 148 5 7 1228 280 284 91 72 chr11 84324869 84325090 -37518766 - MT2B2 LTR ERVL -324 277 48 7 1228 1432 66 44 0 chr11 84325281 84325464 -37518392 - B2_Mm2 SINE B2 -3 192 2 7 1228 21 36 0 0 chr11 84327050 84327078 -37516778 + GC_rich Low_complexity Low_complexity 1 28 0 7 1228 240 260 98 143 chr11 84328156 84328268 -37515588 - PB1D10 SINE Alu -10 107 1 7 1228 587 269 85 28 chr11 84328268 84328344 -37515512 - ID SINE ID -137 87 2 7 1228 27 0 0 0 chr11 84330590 84330617 -37513239 + AT_rich Low_complexity Low_complexity 1 27 0 7 1228 219 125 0 0 chr11 84332246 84332286 -37511570 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1228 411 119 0 0 chr11 84332286 84332353 -37511503 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1228 360 0 0 0 chr11 84334047 84334087 -37509769 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1228 200 300 0 0 chr11 84338747 84338797 -37505059 + CT-rich Low_complexity Low_complexity 3 52 0 7 1228 216 0 0 0 chr11 84341449 84341473 -37502383 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1228 351 0 0 0 chr11 84341473 84341511 -37502345 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1228 728 99 9 0 chr11 84342333 84342444 -37501412 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 7 1228 233 249 116 4 chr11 84343195 84343286 -37500570 + B1F SINE Alu 23 149 0 7 1228 624 91 0 0 chr11 84344746 84344834 -37499022 + (GA)n Simple_repeat Simple_repeat 2 89 0 7 1228 423 0 0 0 chr11 84344916 84344963 -37498893 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1228 220 330 34 0 chr11 84344978 84345066 -37498790 + GA-rich Low_complexity Low_complexity 3 93 0 7 1228 311 234 75 39 chr11 84346421 84346571 -37497285 + MIR3 SINE MIR 115 268 0 7 1228 243 193 0 0 chr11 84347783 84347866 -37495990 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 7 1228 842 158 7 0 chr11 84348599 84348738 -37495118 - B1_Mus1 SINE Alu 0 148 9 7 1228 1404 23 68 0 chr11 84350031 84350208 -37493648 - B2_Mm1a SINE B2 0 193 5 7 1228 266 253 98 54 chr11 84350406 84350498 -37493358 - PB1D10 SINE Alu -17 100 5 7 1228 230 188 20 20 chr11 84350772 84350821 -37493035 - MER5B DNA MER1_type -129 49 1 7 1228 351 241 25 0 chr11 84351725 84351804 -37492052 - ID4 SINE ID 0 83 3 7 1228 308 366 135 13 chr11 84352731 84352961 -37490895 - MIRb SINE MIR -10 258 1 7 1228 222 180 0 0 chr11 84352961 84353022 -37490834 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 7 1228 237 218 177 13 chr11 84353334 84353413 -37490443 + MIRc SINE MIR 40 131 -137 7 1228 270 136 0 0 chr11 84354237 84354281 -37489575 + (CGTG)n Simple_repeat Simple_repeat 2 45 0 7 1228 211 241 114 0 chr11 84355191 84355270 -37488586 - MIR SINE MIR -79 183 96 7 1228 235 141 5 0 chr11 84355277 84355332 -37488524 - ID2 SINE ID -25 58 3 7 1228 522 119 0 0 chr11 84356163 84356247 -37487609 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 7 1228 1076 36 0 7 chr11 84356250 84356389 -37487467 - B1_Mm SINE Alu 0 147 10 7 1228 432 205 16 97 chr11 84356286 84356410 -37487446 - MT2B LTR ERVL -337 264 151 7 1228 449 257 0 35 chr11 84357414 84357527 -37486329 + PB1D10 SINE Alu 1 109 -8 7 1228 701 142 8 0 chr11 84358313 84358433 -37485423 + URR1B DNA MER1_type 99 219 -6 7 1228 232 136 45 106 chr11 84358414 84358480 -37485376 + Zaphod DNA Tip100 2761 2822 -1209 7 1228 308 209 0 64 chr11 84358707 84358825 -37485031 + B1_Mm SINE Alu 44 149 0 7 1228 777 135 0 0 chr11 84358825 84358951 -37484905 + (GAA)n Simple_repeat Simple_repeat 3 128 0 7 1228 705 82 0 0 chr11 84358980 84359077 -37484779 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 7 1228 261 0 0 0 chr11 84359078 84359107 -37484749 + (CAAG)n Simple_repeat Simple_repeat 1 29 0 7 1228 394 246 57 96 chr11 84359112 84359155 -37484701 + MT2B LTR ERVL 115 151 -450 7 1228 702 170 88 7 chr11 84359155 84359291 -37484565 + B1_Mus1 SINE Alu 1 147 -1 7 1228 1076 119 0 5 chr11 84359305 84359507 -37484349 + (GGAA)n Simple_repeat Simple_repeat 1 201 0 7 1228 361 228 19 38 chr11 84359567 84359672 -37484184 + PB1D7 SINE Alu 18 120 0 7 1228 361 197 14 14 chr11 84359873 84359945 -37483911 - ID4 SINE ID -10 73 2 7 1228 530 275 180 0 chr11 84360016 84360205 -37483651 + B4A SINE B4 2 224 -68 7 1228 603 201 139 36 chr11 84360211 84360376 -37483480 + B3A SINE B2 1 182 -16 7 1228 817 204 86 5 chr11 84360455 84360642 -37483214 - B3 SINE B2 -13 203 2 7 1228 546 273 45 90 chr11 84360644 84360766 -37483090 + B4A SINE B4 99 214 -78 7 1228 282 87 0 0 chr11 84360766 84360812 -37483044 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 7 1228 546 273 45 90 chr11 84360820 84360890 -37482966 + B4A SINE B4 215 290 -2 7 1228 849 155 0 0 chr11 84360914 84361147 -37482709 + (CA)n Simple_repeat Simple_repeat 1 233 0 7 1228 214 278 261 22 chr11 84361151 84361243 -37482613 - MIRb SINE MIR -110 158 45 7 1228 221 139 23 0 chr11 84361500 84361543 -37482313 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 7 1228 801 130 46 0 chr11 84361543 84361674 -37482182 - B1_Mur3 SINE Alu -8 141 5 7 1228 234 95 23 23 chr11 84361786 84361829 -37482027 - RSINE1 SINE B4 -37 128 86 7 1228 418 190 231 0 chr11 84361970 84362091 -37481765 - B1F SINE Alu 0 149 1 7 1228 583 278 0 8 chr11 84362236 84362363 -37481493 + RSINE1 SINE B4 2 127 -38 7 1228 602 233 60 0 chr11 84363761 84363894 -37479962 + B1_Mur1 SINE Alu 9 149 0 7 1228 388 235 214 0 chr11 84364518 84364616 -37479240 - B1F2 SINE Alu -29 120 2 7 1228 443 346 0 20 chr11 84364800 84364995 -37478861 - L1M5 LINE L1 -369 5755 5565 7 1228 334 307 41 55 chr11 84365458 84365603 -37478253 - MIRb SINE MIR -99 169 27 7 1228 522 0 0 0 chr11 84365955 84366013 -37477843 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1228 350 102 34 0 chr11 84366214 84366273 -37477583 + (TTTTC)n Simple_repeat Simple_repeat 4 64 0 7 1228 1168 68 0 0 chr11 84366273 84366420 -37477436 - B1_Mm SINE Alu 0 147 1 7 1228 405 248 0 34 chr11 84366446 84366563 -37477293 - PB1D10 SINE Alu 0 117 5 8 1228 678 265 112 48 chr11 84366571 84366727 -37477129 - ID_B1 SINE B4 -5 219 59 8 1228 1386 180 130 9 chr11 84366727 84367057 -37476799 - ORR1D1 LTR MaLR -4 370 1 8 1228 678 265 112 48 chr11 84367057 84367106 -37476750 - ID SINE ID -166 58 1 8 1228 401 288 45 15 chr11 84368116 84368250 -37475606 + B1F SINE Alu 1 138 -11 8 1228 721 271 49 0 chr11 84368250 84368453 -37475403 + ID_B1 SINE B4 2 214 -10 8 1228 570 310 0 6 chr11 84368474 84368630 -37475226 + RSINE1 SINE B4 11 165 0 8 1228 515 215 47 0 chr11 84368692 84368799 -37475057 + B1_Mur1 SINE Alu 2 113 -36 8 1228 771 126 101 29 chr11 84368846 84368985 -37474871 + B1_Mur4 SINE Alu 2 150 0 8 1228 318 67 0 0 chr11 84369278 84369323 -37474533 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 8 1228 1165 48 0 7 chr11 84369724 84369871 -37473985 + B1_Mus2 SINE Alu 2 147 0 8 1228 210 143 0 0 chr11 84369874 84369923 -37473933 + (A)n Simple_repeat Simple_repeat 1 49 0 8 1228 246 381 57 0 chr11 84370002 84370107 -37473749 - L3 LINE CR1 -89 4400 4290 8 1228 247 367 0 0 chr11 84370320 84370399 -37473457 - L3 LINE CR1 -528 3961 3883 8 1228 229 314 29 19 chr11 84370520 84370624 -37473232 + L1M5 LINE L1 5198 5302 -844 8 1228 259 180 16 16 chr11 84370674 84370736 -37473120 + L1M5 LINE L1 5366 5427 -2455 8 1228 606 173 18 0 chr11 84370803 84370913 -37472943 + B4A SINE B4 109 220 -72 8 1228 739 221 0 7 chr11 84371041 84371191 -37472665 + B1_Mur3 SINE Alu 1 149 0 8 1228 198 103 0 0 chr11 84371225 84371254 -37472602 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 8 1228 310 240 26 26 chr11 84371254 84371331 -37472525 + PB1D10 SINE Alu 41 117 0 8 1228 460 264 9 9 chr11 84371423 84371534 -37472322 - PB1D9 SINE Alu -1 119 9 8 1228 840 182 134 0 chr11 84371552 84371739 -37472117 - B3 SINE B2 -3 213 2 8 1228 22 35 0 0 chr11 84371743 84371772 -37472084 + AT_rich Low_complexity Low_complexity 1 29 0 8 1228 1183 54 0 0 chr11 84371789 84371937 -37471919 - B1_Mus1 SINE Alu 0 148 1 8 1228 1388 58 0 0 chr11 84371942 84372116 -37471740 - B2_Mm1t SINE B2 -18 175 2 8 1228 267 103 0 0 chr11 84372223 84372262 -37471594 + (TTA)n Simple_repeat Simple_repeat 1 39 0 8 1228 306 275 0 0 chr11 84372270 84372339 -37471517 - ID4 SINE ID -12 71 3 8 1228 21 0 0 0 chr11 84372367 84372388 -37471468 + AT_rich Low_complexity Low_complexity 1 21 0 8 1228 455 262 68 105 chr11 84372394 84372495 -37471361 + RSINE1 SINE B4 10 107 -58 8 1228 1096 76 14 0 chr11 84372495 84372640 -37471216 + B1_Mus1 SINE Alu 2 148 0 8 1228 455 262 68 105 chr11 84372640 84372700 -37471156 + RSINE1 SINE B4 108 165 0 8 1228 22 35 0 0 chr11 84372713 84372742 -37471114 + AT_rich Low_complexity Low_complexity 1 29 0 8 1228 278 280 57 165 chr11 84372766 84372783 -37471073 + B4 SINE B4 77 187 -105 8 1228 603 237 28 43 chr11 84372783 84372876 -37470980 + B1_Mur1 SINE Alu 2 98 -51 8 1228 1768 187 105 3 chr11 84372876 84373256 -37470600 + MTD LTR MaLR 1 419 0 8 1228 278 280 57 165 chr11 84373256 84373303 -37470553 + B4 SINE B4 188 217 -75 8 1228 315 0 0 0 chr11 84373313 84373348 -37470508 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1228 319 313 0 0 chr11 84373351 84373434 -37470422 - RSINE1 SINE B4 -20 145 63 8 1228 276 327 35 0 chr11 84373533 84373646 -37470210 + PB1D10 SINE Alu 1 117 0 8 1228 761 276 14 40 chr11 84374091 84374314 -37469542 + ID_B1 SINE B4 8 224 0 8 1228 468 0 0 0 chr11 84375486 84375538 -37468318 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1228 476 282 0 17 chr11 84375716 84375835 -37468021 + PB1 SINE Alu 3 119 -8 8 1228 265 210 9 123 chr11 84376017 84376035 -37467821 + RLTR25B LTR ERVK 421 452 -576 8 1228 275 109 0 83 chr11 84376035 84376095 -37467761 + 4.5SRNA scRNA scRNA 32 86 -8 8 1228 779 74 0 0 chr11 84376045 84376153 -37467703 + B1_Mm SINE Alu 40 147 0 8 1228 265 210 9 123 chr11 84376095 84376131 -37467725 + RLTR25B LTR ERVK 453 521 -507 8 1228 768 68 0 0 chr11 84376153 84376256 -37467600 + (GA)n Simple_repeat Simple_repeat 2 104 0 8 1228 479 158 0 0 chr11 84378320 84378402 -37465454 + B1_Mus2 SINE Alu 66 147 0 8 1228 350 256 0 12 chr11 84378444 84378527 -37465329 + ID4 SINE ID 2 83 0 8 1228 225 371 12 0 chr11 84378542 84378639 -37465217 + L2c LINE L2 3071 3171 -216 8 1228 244 279 0 0 chr11 84380081 84380142 -37463714 + MIR SINE MIR 86 146 -62 8 1228 676 280 21 5 chr11 84381131 84381318 -37462538 - ID_B1 SINE B4 -8 216 27 8 1228 316 356 0 0 chr11 84381351 84381441 -37462415 - ID_B1 SINE B4 -49 175 86 8 1228 771 11 0 0 chr11 84382519 84382607 -37461249 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1228 536 116 11 0 chr11 84385605 84385700 -37458156 + (TC)n Simple_repeat Simple_repeat 1 96 0 8 1228 548 198 149 0 chr11 84385711 84385832 -37458024 - B1_Mur2 SINE Alu -9 140 2 8 1228 574 123 0 28 chr11 84385877 84385986 -37457870 + CT-rich Low_complexity Low_complexity 3 108 0 8 1228 530 198 0 29 chr11 84385991 84386095 -37457761 - PB1D10 SINE Alu -16 101 1 8 1228 1156 185 19 9 chr11 84386410 84386623 -37457233 + B3 SINE B2 2 216 0 8 1228 205 236 53 53 chr11 84388041 84388117 -37455739 - MIRb SINE MIR -83 185 110 8 1228 427 290 40 90 chr11 84390681 84391066 -37452790 - L1MC LINE L1 -1736 4410 4044 8 1228 406 295 0 19 chr11 84391071 84391178 -37452678 - MIRb SINE MIR -133 135 31 8 1228 315 177 0 0 chr11 84391332 84391394 -37452462 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1228 316 278 14 131 chr11 84391394 84391539 -37452317 - B4A SINE B4 0 292 165 8 1228 402 242 98 29 chr11 84391749 84391851 -37452005 + MIR SINE MIR 72 180 -82 8 1228 270 290 0 0 chr11 84392029 84392098 -37451758 + MIRc SINE MIR 96 164 -104 8 1228 414 94 0 0 chr11 84393118 84393182 -37450674 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 1228 836 264 62 52 chr11 84393973 84394171 -37449685 - B4 SINE B4 0 292 89 8 1228 1448 61 28 0 chr11 84394171 84394352 -37449504 - B2_Mm2 SINE B2 -9 186 1 8 1228 836 264 62 52 chr11 84394352 84394441 -37449415 - B4 SINE B4 -204 88 2 8 1228 189 287 264 0 chr11 84394582 84394669 -37449187 - MIRb SINE MIR -146 122 13 8 1228 279 314 73 49 chr11 84394780 84394944 -37448912 + MIRm SINE MIR 17 184 -92 8 1228 495 0 0 0 chr11 84395192 84395247 -37448609 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 8 1228 304 128 9 0 chr11 84395253 84395302 -37448554 - B1F1 SINE Alu -21 126 75 8 1228 543 240 0 9 chr11 84395315 84395420 -37448436 - PB1D10 SINE Alu -13 104 1 8 1228 279 0 0 0 chr11 84395430 84395461 -37448395 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 8 1228 256 333 53 18 chr11 84395462 84395575 -37448281 - MER5B DNA MER1_type -60 118 2 8 1228 212 179 0 0 chr11 84396455 84396494 -37447362 + (CATA)n Simple_repeat Simple_repeat 2 40 0 8 1228 346 171 43 0 chr11 84396635 84396705 -37447151 + ID4 SINE ID 2 74 -9 8 1228 405 180 8 15 chr11 84396875 84397005 -37446851 + (TA)n Simple_repeat Simple_repeat 2 130 0 8 1228 982 237 82 30 chr11 84397017 84397287 -37446569 - B4A SINE B4 -8 284 1 8 1228 406 271 206 15 chr11 84397318 84397449 -37446407 - ID_B1 SINE B4 -12 212 57 8 1228 209 208 157 59 chr11 84397489 84397591 -37446265 - L3 LINE CR1 -2342 2147 2036 8 1228 237 315 76 0 chr11 84398475 84398567 -37445289 + MIRb SINE MIR 88 186 -82 8 1228 391 271 92 20 chr11 84399453 84399618 -37444238 - MIR SINE MIR -85 191 14 8 1228 263 224 171 0 chr11 84400374 84400450 -37443406 + MIRb SINE MIR 63 151 -117 8 1228 220 315 58 52 chr11 84401129 84401283 -37442573 - MIRb SINE MIR -76 192 38 8 1228 401 165 44 66 chr11 84401496 84401587 -37442269 + B1F1 SINE Alu 11 99 -50 8 1228 605 203 0 22 chr11 84401625 84401806 -37442050 + (TA)n Simple_repeat Simple_repeat 1 177 0 8 1228 946 296 58 122 chr11 84401885 84402424 -37441432 - MLT1F LTR MaLR 0 548 45 8 1228 473 224 344 25 chr11 84402549 84402709 -37441147 + ID_B1 SINE B4 2 212 -12 8 1228 575 0 29 0 chr11 84402709 84402779 -37441077 + (TAAAA)n Simple_repeat Simple_repeat 4 75 0 8 1228 280 318 93 19 chr11 84402783 84402988 -37440868 + L1ME3A LINE L1 5950 6169 -4 8 1228 299 279 146 37 chr11 84404194 84404358 -37439498 - L2b LINE L2 -208 3167 2986 8 1228 201 39 0 0 chr11 84404506 84404532 -37439324 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 8 1228 805 253 19 0 chr11 84405436 84405590 -37438266 + RSINE1 SINE B4 3 159 -6 8 1228 217 281 222 84 chr11 84405441 84405608 -37438248 + B3A SINE B2 7 196 -2 8 1228 243 61 0 0 chr11 84406270 84406303 -37437553 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1228 192 314 108 46 chr11 84406903 84407033 -37436823 - MIRc SINE MIR -95 173 36 8 1228 405 0 0 0 chr11 84407172 84407217 -37436639 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1228 490 286 9 0 chr11 84407228 84407333 -37436523 - ID_B1 SINE B4 -17 207 102 8 1228 230 242 30 61 chr11 84407290 84407356 -37436500 + YREP_Mm Unknown Unknown 254 317 -1495 8 1228 270 116 0 0 chr11 84407405 84407448 -37436408 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 8 1228 378 282 120 52 chr11 84407494 84407770 -37436086 - B4 SINE B4 0 292 7 8 1228 216 0 0 0 chr11 84407775 84407799 -37436057 + (TTA)n Simple_repeat Simple_repeat 1 24 0 8 1228 231 223 125 80 chr11 84407800 84407912 -37435944 - MIR SINE MIR -75 133 17 8 1228 287 289 26 0 chr11 84408743 84408819 -37435037 + RMER15 LTR ERVL 405 482 -93 8 1228 821 306 38 48 chr11 84408971 84409260 -37434596 - B4 SINE B4 -4 288 3 8 1228 186 196 56 56 chr11 84409615 84409669 -37434187 + L2c LINE L2 3266 3319 -68 9 1228 513 68 0 0 chr11 84410250 84410324 -37433532 + (CA)n Simple_repeat Simple_repeat 2 75 0 9 1229 208 292 0 14 chr11 84410568 84410641 -37433215 + GA-rich Low_complexity Low_complexity 3 74 0 9 1229 279 246 103 110 chr11 84410914 84410950 -37432906 - MIR SINE MIR -24 238 204 9 1229 240 240 64 39 chr11 84410950 84411028 -37432828 - ID4_ SINE ID 0 83 4 9 1229 279 276 74 90 chr11 84411028 84411193 -37432663 - MIR SINE MIR -59 203 45 9 1229 430 206 37 0 chr11 84412083 84412180 -37431676 - PB1D10 SINE Alu -11 106 1 9 1229 614 302 33 0 chr11 84412180 84412362 -37431494 - MIR SINE MIR -43 219 32 9 1229 547 244 128 23 chr11 84412376 84412548 -37431308 - MIR SINE MIR -33 229 40 9 1229 213 143 204 0 chr11 84413313 84413362 -37430494 - L2a LINE L2 -2 3424 3366 9 1229 867 118 102 7 chr11 84413419 84413556 -37430300 + B1_Mur4 SINE Alu 1 150 0 9 1229 394 282 167 40 chr11 84414090 84414142 -37429714 + CYRA11_Mm Unknown Y-chromosome 126 251 -366 9 1229 649 125 124 8 chr11 84414142 84414263 -37429593 - URR1B DNA MER1_type 0 225 91 9 1229 394 282 167 40 chr11 84414263 84414312 -37429544 + CYRA11_Mm Unknown Y-chromosome 252 375 -242 9 1229 244 135 57 19 chr11 84414641 84414694 -37429162 + (CACCC)n Simple_repeat Simple_repeat 2 56 0 9 1229 782 163 20 20 chr11 84414912 84415062 -37428794 - B1_Mur4 SINE Alu 0 150 1 9 1229 1323 91 5 11 chr11 84415070 84415258 -37428598 - B2_Mm1a SINE B2 -6 187 1 9 1229 429 241 20 134 chr11 84415271 84415472 -37428384 - L1MA9 LINE L1 -389 5923 5746 9 1229 463 149 0 0 chr11 84415506 84415573 -37428283 + B1_Mur4 SINE Alu 4 70 -80 9 1229 180 188 14 28 chr11 84415890 84415961 -37427895 + G-rich Low_complexity Low_complexity 4 73 0 9 1229 334 327 35 17 chr11 84416636 84416751 -37427105 + MER58B DNA MER1_type 222 338 -3 9 1229 794 239 12 12 chr11 84416801 84416966 -37426890 + B3A SINE B2 1 165 -33 9 1229 392 55 0 18 chr11 84416979 84417035 -37426821 + (CATA)n Simple_repeat Simple_repeat 2 56 0 9 1229 28 0 0 0 chr11 84417097 84417125 -37426731 + AT_rich Low_complexity Low_complexity 1 28 0 9 1229 457 237 7 2 chr11 84417132 84417272 -37426584 + B3 SINE B2 1 202 -14 9 1229 399 41 0 0 chr11 84417272 84417321 -37426535 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 9 1229 450 0 0 0 chr11 84417932 84417982 -37425874 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1229 233 303 54 95 chr11 84418382 84418550 -37425306 - LTR81C LTR ERV1? -305 848 688 9 1229 360 64 0 0 chr11 84419400 84419447 -37424409 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 9 1229 468 139 0 0 chr11 84419978 84420057 -37423799 + (TCC)n Simple_repeat Simple_repeat 1 79 0 9 1229 257 68 23 0 chr11 84420227 84420271 -37423585 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 9 1229 453 274 119 66 chr11 84420649 84420939 -37422917 - L2c LINE L2 -5 3382 3056 9 1229 235 72 23 23 chr11 84422240 84422283 -37421573 + (TTA)n Simple_repeat Simple_repeat 2 44 0 9 1229 533 250 0 0 chr11 84422537 84422649 -37421207 - PB1D10 SINE Alu -5 112 1 9 1229 320 299 115 40 chr11 84422775 84422949 -37420907 + B4A SINE B4 1 187 -105 9 1229 211 337 12 24 chr11 84422986 84423071 -37420785 - L2c LINE L2 -260 3127 3044 9 1229 218 244 25 19 chr11 84423836 84423995 -37419861 + GA-rich Low_complexity Low_complexity 3 162 0 9 1229 225 94 0 0 chr11 84423846 84423878 -37419978 + (GGA)n Simple_repeat Simple_repeat 3 34 0 9 1229 437 214 29 0 chr11 84424006 84424109 -37419747 + PB1D7 SINE Alu 1 106 -14 9 1229 198 250 0 0 chr11 84424262 84424318 -37419538 + GA-rich Low_complexity Low_complexity 3 58 0 9 1229 182 289 74 53 chr11 84425102 84425197 -37418659 + MIRm SINE MIR 31 127 -149 9 1229 425 155 113 0 chr11 84425446 84425517 -37418339 - B1_Mus2 SINE Alu -51 96 18 9 1229 242 190 161 97 chr11 84425517 84425539 -37418317 - MT2B LTR ERVL -350 251 153 9 1229 566 181 0 0 chr11 84425582 84425676 -37418180 - B1_Mus2 SINE Alu -2 145 52 9 1229 875 228 41 10 chr11 84425696 84425891 -37417965 - B3 SINE B2 0 216 16 9 1229 804 306 14 0 chr11 84425919 84426138 -37417718 + ID_B1 SINE B4 1 222 -2 9 1229 431 0 0 36 chr11 84426149 84426205 -37417651 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 9 1229 1138 49 21 0 chr11 84426208 84426352 -37417504 + B1_Mm SINE Alu 1 147 0 9 1229 216 132 14 42 chr11 84426358 84426429 -37417427 + A-rich Low_complexity Low_complexity 4 72 0 9 1229 267 282 145 52 chr11 84426443 84426794 -37417062 + L2b LINE L2 2807 3194 -232 9 1229 273 298 66 0 chr11 84426874 84426995 -37416861 - L1MEd LINE L1 -5368 751 623 9 1229 326 340 71 26 chr11 84427490 84427515 -37416341 - L1MEd LINE L1 -5957 162 138 9 1229 414 0 0 0 chr11 84427515 84427561 -37416295 + (TA)n Simple_repeat Simple_repeat 2 47 0 9 1229 326 340 71 26 chr11 84427561 84427689 -37416167 - L1MEd LINE L1 -5982 137 3 9 1229 565 291 17 97 chr11 84427776 84427910 -37415946 - RSINE1 SINE B4 -2 163 31 9 1229 1555 160 113 38 chr11 84427910 84428255 -37415601 + ORR1D1 LTR MaLR 1 371 -3 9 1229 565 291 17 97 chr11 84428255 84428295 -37415561 - RSINE1 SINE B4 -135 30 3 9 1229 845 74 16 0 chr11 84428313 84428434 -37415422 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 9 1229 6811 113 45 4 chr11 84428647 84430160 -37413696 - Lx2 LINE L1 -33 6967 5294 9 1229 1181 83 59 6 chr11 84430160 84430330 -37413526 - B2_Mm2 SINE B2 -9 186 8 9 1229 615 143 9 0 chr11 84430336 84430448 -37413408 - Lx2 LINE L1 -579 5304 5192 9 1229 7007 67 107 27 chr11 84430444 84431770 -37412086 - L1VL2 LINE L1 -1708 1907 451 9 1229 198 215 87 58 chr11 84431880 84431949 -37411907 + MIRc SINE MIR 3 73 -195 9 1229 601 224 75 0 chr11 84432052 84432186 -37411670 - B1_Mur3 SINE Alu -4 145 2 9 1229 811 233 11 11 chr11 84432196 84432374 -37411482 - B3A SINE B2 -1 197 20 9 1229 469 155 0 14 chr11 84432394 84432466 -37411390 - ID_B1 SINE B4 -8 216 146 9 1229 250 307 10 83 chr11 84432860 84432956 -37410900 - B1F2 SINE Alu -60 89 1 9 1229 228 35 0 0 chr11 84433095 84433124 -37410732 + (G)n Simple_repeat Simple_repeat 1 29 0 9 1229 261 319 26 9 chr11 84433239 84433353 -37410503 - L1MC4 LINE L1 0 8042 7927 9 1229 356 283 11 0 chr11 84433653 84433745 -37410111 - L1MC4 LINE L1 -533 5775 5683 9 1229 378 228 32 21 chr11 84433752 84433846 -37410010 - MLT1G LTR MaLR -7 584 490 9 1229 1341 158 0 9 chr11 84433847 84434064 -37409792 + B3 SINE B2 2 216 0 9 1229 923 166 0 14 chr11 84434090 84434237 -37409619 + B1_Mus1 SINE Alu 2 146 -2 9 1229 895 269 13 77 chr11 84434287 84434597 -37409259 + B4A SINE B4 3 292 0 9 1229 629 207 7 112 chr11 84434871 84435023 -37408833 + ID_B1 SINE B4 83 218 -6 9 1229 231 235 39 0 chr11 84435038 84435089 -37408767 + PB1D7 SINE Alu 68 120 0 9 1229 368 297 20 0 chr11 84435138 84435239 -37408617 + B4A SINE B4 190 292 0 9 1229 213 281 0 0 chr11 84435257 84435314 -37408542 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 9 1229 273 304 0 12 chr11 84435316 84435396 -37408460 - MLT1H2 LTR MaLR -334 155 77 9 1229 507 242 68 8 chr11 84435467 84435600 -37408256 + B1F SINE Alu 1 141 -8 9 1229 347 295 133 22 chr11 84435810 84436060 -37407796 - L1MC4 LINE L1 -4863 1352 1121 9 1229 1047 98 0 14 chr11 84436063 84436208 -37407648 - B1_Mus1 SINE Alu -1 147 5 9 1229 318 211 18 0 chr11 84436244 84436301 -37407555 - RSINE1 SINE B4 0 165 108 9 1229 205 326 2 88 chr11 84436832 84436973 -37406883 + L2c LINE L2 3010 3144 -243 9 1229 246 365 58 53 chr11 84437207 84437415 -37406441 - MER3 DNA MER1_type 0 209 1 9 1229 184 149 0 41 chr11 84437816 84437865 -37405991 + GA-rich Low_complexity Low_complexity 3 49 0 9 1229 351 44 0 0 chr11 84438096 84438141 -37405715 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1229 348 222 16 0 chr11 84438141 84438204 -37405652 - ID4 SINE ID -11 72 9 9 1229 375 287 40 24 chr11 84438209 84438334 -37405522 - B1F1 SINE Alu -22 127 1 9 1229 215 237 0 119 chr11 84438391 84438458 -37405398 + MIRc SINE MIR 104 162 -106 9 1229 404 52 0 33 chr11 84439558 84439618 -37404238 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 9 1229 216 86 0 0 chr11 84439619 84439654 -37404202 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1229 1219 48 7 0 chr11 84439658 84439804 -37404052 - B1_Mm SINE Alu 0 147 1 9 1229 419 284 52 33 chr11 84439879 84440032 -37403824 - MIRb SINE MIR -42 226 71 9 1229 936 108 8 0 chr11 84440329 84440459 -37403397 + B1_Mus1 SINE Alu 18 148 0 9 1229 404 37 19 0 chr11 84440461 84440515 -37403341 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 9 1229 836 274 15 5 chr11 84440524 84440729 -37403127 + ID_B1 SINE B4 3 209 -15 9 1229 243 88 0 0 chr11 84440732 84440766 -37403090 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1229 434 230 25 42 chr11 84442135 84442253 -37401603 + PB1D10 SINE Alu 1 116 -1 9 1229 345 100 0 0 chr11 84442255 84442305 -37401551 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 9 1229 538 246 7 100 chr11 84442349 84442489 -37401367 + RSINE1 SINE B4 8 134 -31 9 1229 244 315 45 80 chr11 84442489 84442525 -37401331 + B2_Mm2 SINE B2 7 176 -19 9 1229 247 279 16 0 chr11 84442524 84442585 -37401271 + ID4_ SINE ID 20 81 -2 9 1229 306 376 78 15 chr11 84442610 84442815 -37401041 + MIRb SINE MIR 19 236 -32 9 1229 323 168 73 73 chr11 84443665 84443710 -37400146 + ID_B1 SINE B4 114 157 -67 9 1229 331 260 130 77 chr11 84443710 84443918 -37399938 + ID_B1 SINE B4 4 222 -2 9 1229 684 217 7 34 chr11 84443925 84444073 -37399783 + B1_Mur2 SINE Alu 3 146 -3 9 1229 323 168 73 73 chr11 84444073 84444128 -37399728 + ID_B1 SINE B4 164 222 -2 9 1229 546 16 0 0 chr11 84445491 84445554 -37398302 + (TC)n Simple_repeat Simple_repeat 1 63 0 9 1229 236 253 91 26 chr11 84446289 84446366 -37397490 - PB1 SINE Alu -7 120 39 1 1229 220 318 76 0 chr11 84446333 84446399 -37397457 - B4 SINE B4 -172 120 50 1 1229 532 271 21 21 chr11 84447288 84447431 -37396425 + B1F1 SINE Alu 1 143 -6 1 1229 483 63 0 0 chr11 84447454 84447517 -37396339 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 1 1229 872 154 6 0 chr11 84447596 84447771 -37396085 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 1 1229 485 255 207 0 chr11 84447990 84448135 -37395721 + MER45A DNA Tip100 1 175 -3 1 1229 1407 50 0 0 chr11 84448378 84448558 -37395298 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1 1229 225 119 0 0 chr11 84448564 84448606 -37395250 + (TCTCTG)n Simple_repeat Simple_repeat 1 42 0 1 1229 336 135 0 39 chr11 84451338 84451415 -37392441 + (TGG)n Simple_repeat Simple_repeat 3 76 0 1 1229 573 232 49 35 chr11 84452640 84452783 -37391073 + B1F SINE Alu 5 149 0 1 1229 201 290 58 0 chr11 84453248 84453317 -37390539 - L2c LINE L2 -2 3385 3313 1 1229 468 0 0 0 chr11 84453631 84453683 -37390173 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1229 815 191 0 7 chr11 84453807 84453949 -37389907 - B1_Mur4 SINE Alu -2 148 8 1 1229 224 245 0 0 chr11 84454136 84454185 -37389671 - L2b LINE L2 -1 3374 3326 1 1229 351 0 0 0 chr11 84455885 84455924 -37387932 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1229 368 287 37 52 chr11 84456496 84456632 -37387224 - MIRb SINE MIR -17 251 118 1 1229 550 353 7 14 chr11 84457387 84457674 -37386182 + L1M5 LINE L1 2729 3013 -3133 1 1229 219 288 104 35 chr11 84457813 84457928 -37385928 - RSINE1 SINE B4 0 165 43 1 1229 372 239 0 0 chr11 84457914 84457985 -37385871 - B3 SINE B2 -66 150 80 1 1229 865 263 152 32 chr11 84458794 84459252 -37384604 + L1_Mur3 LINE L1 5247 5759 -121 1 1229 562 268 37 31 chr11 84459335 84459497 -37384359 - RSINE1 SINE B4 0 165 3 1 1229 989 202 32 5 chr11 84459999 84460188 -37383668 - B3A SINE B2 -4 194 1 1 1229 852 167 231 6 chr11 84460597 84460766 -37383090 + B3 SINE B2 1 207 -9 1 1229 985 239 29 0 chr11 84460771 84460976 -37382880 - B3 SINE B2 -5 211 1 1 1229 525 216 34 51 chr11 84460978 84461095 -37382761 - PB1D10 SINE Alu -2 115 1 1 1229 573 15 0 0 chr11 84461121 84461187 -37382669 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1229 327 301 29 10 chr11 84461203 84461307 -37382549 + L1M5 LINE L1 2837 2942 -3204 1 1229 673 302 83 16 chr11 84461315 84461717 -37382139 + L1MA5A LINE L1 5618 6009 -1635 1 1229 656 285 96 16 chr11 84461890 84462140 -37381716 + L1MC3 LINE L1 6672 6941 -844 1 1229 343 374 59 40 chr11 84462394 84462667 -37381189 + MLT1J LTR MaLR 45 322 -190 1 1229 309 333 62 34 chr11 84462783 84462929 -37380927 + L1M5 LINE L1 4775 4924 -1222 1 1229 24 53 0 0 chr11 84463071 84463109 -37380747 + AT_rich Low_complexity Low_complexity 1 38 0 1 1229 1472 71 16 0 chr11 84463121 84463303 -37380553 - B2_Mm2 SINE B2 -10 185 1 1 1229 871 170 0 7 chr11 84463469 84463611 -37380245 + B1_Mur3 SINE Alu 1 141 -8 1 1229 186 71 0 0 chr11 84463611 84463639 -37380217 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1229 211 350 0 0 chr11 84463676 84463736 -37380120 + ID4 SINE ID 1 60 -23 1 1229 317 269 49 140 chr11 84464086 84464250 -37379606 - LTR41B LTR ERVL -609 149 1 1 1229 534 149 0 0 chr11 84464900 84464912 -37378944 + (TCC)n Simple_repeat Simple_repeat 1 12 0 1 1229 1100 119 0 6 chr11 84464912 84465090 -37378766 + (TTC)n Simple_repeat Simple_repeat 3 179 0 1 1229 534 149 0 0 chr11 84465090 84465171 -37378685 + (TCC)n Simple_repeat Simple_repeat 1 81 0 1 1229 662 193 109 15 chr11 84465171 84465308 -37378548 - B1_Mur4 SINE Alu 0 150 1 1 1229 890 246 205 12 chr11 84465308 84465563 -37378293 + MTE2b LTR MaLR 70 374 -5 1 1229 346 214 79 56 chr11 84465620 84465709 -37378147 + PB1D10 SINE Alu 25 115 -2 1 1229 366 158 465 0 chr11 84465720 84465821 -37378035 + B1_Mur2 SINE Alu 2 149 0 1 1229 530 226 11 11 chr11 84465821 84465996 -37377860 + GA-rich Low_complexity Low_complexity 1 175 0 1 1229 22 56 0 0 chr11 84466183 84466219 -37377637 + AT_rich Low_complexity Low_complexity 1 36 0 1 1229 754 240 28 6 chr11 84466227 84466403 -37377453 - B3A SINE B2 -18 180 1 1 1229 1056 101 6 11 chr11 84466760 84466940 -37376916 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 1 1229 198 0 0 0 chr11 84467512 84467534 -37376322 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1229 213 337 10 31 chr11 84468202 84468300 -37375556 + MIRb SINE MIR 123 218 -50 1 1229 427 214 114 49 chr11 84468464 84468483 -37375373 + B1F SINE Alu 19 144 0 1 1229 492 192 81 0 chr11 84468483 84468582 -37375274 + ID_B1 SINE B4 118 224 0 1 1229 278 299 13 0 chr11 84468691 84468768 -37375088 + CT-rich Low_complexity Low_complexity 5 82 0 1 1229 470 294 123 0 chr11 84468874 84469099 -37374757 + MLT1G3 LTR MaLR 2 236 -359 1 1229 1497 131 254 3 chr11 84469228 84469512 -37374344 + ORR1B2 LTR MaLR 6 360 -7 1 1229 870 239 114 24 chr11 84469513 84469723 -37374133 - B4A SINE B4 -63 229 1 1 1229 492 281 5 30 chr11 84469913 84470115 -37373741 - L1M5 LINE L1 -667 5457 5261 1 1229 471 325 80 20 chr11 84470347 84470598 -37373258 + LTR16A1 LTR ERVL 68 333 -123 1 1229 1697 164 110 26 chr11 84470995 84471165 -37372691 - ORR1D1 LTR MaLR 0 374 177 1 1229 627 39 0 0 chr11 84471165 84471243 -37372613 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1229 1697 164 110 26 chr11 84471243 84471417 -37372439 - ORR1D1 LTR MaLR -198 176 2 1 1229 324 0 0 0 chr11 84474178 84474214 -37369642 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 1 1229 228 282 206 54 chr11 84474978 84475162 -37368694 - RLTR3_Mm LTR ERVK -888 440 229 1 1229 678 269 15 40 chr11 84475070 84475271 -37368585 + MamRep564 Unknown Unknown 43 238 -119 1 1229 232 238 15 31 chr11 84475822 84475887 -37367969 + CT-rich Low_complexity Low_complexity 3 66 0 1 1229 627 201 222 26 chr11 84476264 84476417 -37367439 - ID_B1 SINE B4 -22 202 20 1 1229 277 356 20 102 chr11 84476514 84476661 -37367195 - RSINE1 SINE B4 -28 137 3 1 1229 506 217 6 185 chr11 84477248 84477418 -37366438 + ID_B1 SINE B4 84 217 -7 1 1229 2202 169 70 5 chr11 84477635 84478021 -37365835 + MTC LTR MaLR 1 411 -10 1 1229 23 0 0 0 chr11 84478084 84478107 -37365749 + AT_rich Low_complexity Low_complexity 1 23 0 1 1229 853 205 0 20 chr11 84478109 84478258 -37365598 + B1_Mur3 SINE Alu 3 148 -1 1 1229 184 29 0 103 chr11 84478261 84478300 -37365556 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1229 941 207 91 5 chr11 84478324 84478523 -37365333 - B3 SINE B2 0 216 1 1 1229 303 93 0 0 chr11 84478532 84478575 -37365281 + (CTCA)n Simple_repeat Simple_repeat 1 43 0 1 1229 499 156 0 0 chr11 84478589 84478666 -37365190 - B1_Mus2 SINE Alu -20 127 51 1 1229 564 186 79 9 chr11 84479038 84479152 -37364704 - RSINE1 SINE B4 -28 137 16 1 1229 457 281 18 0 chr11 84479271 84479385 -37364471 - PB1D10 SINE Alu -1 116 1 1 1229 383 20 39 0 chr11 84479488 84479539 -37364317 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 1229 674 198 30 53 chr11 84479540 84479673 -37364183 - B1_Mur4 SINE Alu -14 136 7 1 1229 227 255 17 190 chr11 84479643 84479759 -37364097 - MT2B LTR ERVL -309 292 197 1 1229 346 218 86 37 chr11 84479692 84479773 -37364083 - PB1D10 SINE Alu -8 109 25 1 1229 1278 276 93 23 chr11 84479774 84480370 -37363486 + L1MC2 LINE L1 5220 5834 -510 1 1229 719 194 78 0 chr11 84480370 84480499 -37363357 + B1_Mur2 SINE Alu 2 140 -9 1 1229 1179 289 105 32 chr11 84480499 84480560 -37363296 + L1MC2 LINE L1 5835 5891 -453 1 1229 261 0 0 0 chr11 84480560 84480589 -37363267 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1229 891 134 35 7 chr11 84480589 84480732 -37363124 + B1_Mus1 SINE Alu 2 148 0 1 1229 1179 289 105 32 chr11 84480732 84481020 -37362836 + L1MC2 LINE L1 5892 6232 -112 1 1229 365 342 76 25 chr11 84481221 84481419 -37362437 + L1ME3A LINE L1 5785 5992 -181 1 1229 478 224 10 0 chr11 84481585 84481683 -37362173 + ID_B1 SINE B4 3 101 -123 1 1229 579 228 9 0 chr11 84482186 84482300 -37361556 + PB1D10 SINE Alu 3 117 0 1 1229 181 143 0 51 chr11 84482304 84482363 -37361493 + A-rich Low_complexity Low_complexity 4 59 0 1 1229 228 135 0 0 chr11 84483167 84483204 -37360652 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1229 203 208 62 0 chr11 84484597 84484645 -37359211 + MIR3 SINE MIR 121 171 -37 1 1229 191 272 31 61 chr11 84485526 84485624 -37358232 - MIRc SINE MIR -93 175 81 1 1229 1188 62 7 0 chr11 84487095 84487240 -37356616 - B1_Mus2 SINE Alu 0 147 2 1 1229 220 328 16 0 chr11 84487243 84487304 -37356552 + RSINE1 SINE B4 93 154 -11 1 1229 348 43 0 0 chr11 84487313 84487359 -37356497 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1229 221 422 0 0 chr11 84487405 84487495 -37356361 + MIRb SINE MIR 80 169 -99 1 1229 266 290 0 16 chr11 84487852 84487915 -37355941 + ID4 SINE ID 8 69 -14 1 1229 483 48 0 0 chr11 84487915 84487977 -37355879 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1229 186 125 0 30 chr11 84488001 84488034 -37355822 + L2a LINE L2 3379 3410 -16 1 1229 1667 32 0 0 chr11 84488072 84488261 -37355595 - B2_Mm1a SINE B2 -4 189 1 1 1229 345 319 90 5 chr11 84488760 84488949 -37354907 + L1MB5 LINE L1 5383 5587 -597 1 1229 284 242 136 0 chr11 84488958 84489024 -37354832 + B1F2 SINE Alu 1 75 -74 1 1229 234 0 0 0 chr11 84489035 84489061 -37354795 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1229 722 264 0 0 chr11 84489062 84489202 -37354654 + ID_B1 SINE B4 84 223 -1 1 1229 827 271 21 28 chr11 84489219 84489515 -37354341 + L1MB5 LINE L1 5689 5985 -189 1 1229 1187 76 0 0 chr11 84489515 84489660 -37354196 + B1_Mus2 SINE Alu 2 146 -1 1 1229 761 279 58 110 chr11 84489660 84489882 -37353974 + L1MB5 LINE L1 5985 6180 0 1 1229 1318 152 0 67 chr11 84490973 84491213 -37352643 - URR1B DNA MER1_type 0 225 2 1 1229 1281 61 0 0 chr11 84491307 84491557 -37352299 + (TAGG)n Simple_repeat Simple_repeat 1 250 0 1 1229 252 219 76 30 chr11 84492573 84492639 -37351217 - L2b LINE L2 -1 3374 3306 1 1229 909 279 55 0 chr11 84492660 84492968 -37350888 + L1MB4 LINE L1 5775 6099 -81 1 1229 346 214 212 8 chr11 84492980 84493098 -37350758 - B1F SINE Alu -2 147 6 1 1229 305 303 0 0 chr11 84493192 84493258 -37350598 - ID4_ SINE ID -15 68 3 1 1229 245 111 0 0 chr11 84493258 84493294 -37350562 + L1MB4 LINE L1 6091 6126 -54 1 1229 1129 229 97 44 chr11 84493721 84494040 -37349816 + MTE2b LTR MaLR 1 336 -43 1 1229 339 286 135 1 chr11 84494392 84494529 -37349327 - MIRm SINE MIR -107 161 9 1 1229 329 246 15 0 chr11 84495456 84495521 -37348335 - RMER30 DNA MER1_type -130 72 7 1 1229 243 0 0 0 chr11 84496304 84496331 -37347525 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1229 454 261 0 0 chr11 84497346 84497438 -37346418 + PB1D7 SINE Alu 23 114 -6 1 1229 679 252 7 0 chr11 84497446 84497585 -37346271 + RSINE1 SINE B4 5 144 -21 1 1229 221 132 36 36 chr11 84497817 84497872 -37345984 + T-rich Low_complexity Low_complexity 3 57 0 1 1229 1044 30 45 0 chr11 84497875 84498008 -37345848 - B2_Mm2 SINE B2 0 195 57 1 1229 412 246 31 62 chr11 84498159 84498289 -37345567 - L3 LINE CR1 -207 4282 4157 1 1229 234 246 0 26 chr11 84498808 84498925 -37344931 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 1229 1464 215 88 26 chr11 84499042 84499419 -37344437 - MTD LTR MaLR -15 404 5 1 1229 205 349 124 36 chr11 84499548 84499685 -37344171 + L2b LINE L2 3226 3374 -1 1 1229 342 292 47 0 chr11 84500923 84501029 -37342827 + L1ME3B LINE L1 5762 5872 -368 1 1229 230 268 28 14 chr11 84501034 84501106 -37342750 + ID4_ SINE ID 1 73 -10 2 1229 767 247 6 36 chr11 84501118 84501286 -37342570 + RSINE1 SINE B4 3 165 0 3 1229 191 36 0 35 chr11 84501289 84501318 -37342538 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1229 790 242 51 35 chr11 84501331 84501528 -37342328 + B3 SINE B2 1 200 -16 5 1229 249 33 0 0 chr11 84501528 84501558 -37342298 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 6 1229 493 138 11 11 chr11 84501599 84501694 -37342162 + GA-rich Low_complexity Low_complexity 3 97 0 7 1229 432 0 0 0 chr11 84502022 84502070 -37341786 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 8 1229 469 260 83 13 chr11 84502070 84502226 -37341630 - L1M4 LINE L1 -3011 3135 2969 9 1229 1210 42 7 7 chr11 84502433 84502578 -37341278 - B1_Mus2 SINE Alu -1 146 2 1 1229 21 0 0 0 chr11 84502582 84502603 -37341253 + AT_rich Low_complexity Low_complexity 1 21 0 1 1229 457 380 27 30 chr11 84502637 84502900 -37340956 - B4 SINE B4 -1 291 30 1 1229 1269 99 66 0 chr11 84502900 84503081 -37340775 - B2_Mm2 SINE B2 -2 193 1 1 1229 511 198 79 0 chr11 84503081 84503182 -37340674 - ID_B1 SINE B4 -67 157 49 1 1229 347 309 15 60 chr11 84503927 84504061 -37339795 + MIR3 SINE MIR 14 141 -67 1 1229 193 312 125 0 chr11 84504131 84504227 -37339629 - MIRb SINE MIR -70 198 91 1 1229 549 0 0 0 chr11 84505250 84505311 -37338545 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1229 309 26 0 0 chr11 84505311 84505348 -37338508 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1229 1087 181 80 0 chr11 84505646 84505845 -37338011 - B3 SINE B2 0 216 2 1 1229 297 0 0 0 chr11 84505874 84505907 -37337949 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1229 25 31 0 0 chr11 84506148 84506180 -37337676 + GC_rich Low_complexity Low_complexity 1 32 0 2 1229 507 173 12 0 chr11 84506898 84506979 -37336877 - ID_B1 SINE B4 -10 214 133 2 1229 258 276 54 54 chr11 84506989 84507081 -37336775 - MER5B DNA MER1_type -23 155 64 2 1229 320 292 112 9 chr11 84507080 84507187 -37336669 - ID_B1 SINE B4 -106 118 1 2 1229 310 300 52 85 chr11 84507189 84507342 -37336514 + B4 SINE B4 51 198 -94 2 1229 679 170 34 91 chr11 84507224 84507373 -37336483 + B1_Mur2 SINE Alu 5 144 -5 2 1229 244 220 20 0 chr11 84507381 84507431 -37336425 - MIR3 SINE MIR -54 154 104 2 1229 308 271 57 28 chr11 84507870 84508037 -37335819 + ORR1E LTR MaLR 207 365 -14 2 1229 186 324 35 105 chr11 84508067 84508181 -37335675 - MIRm SINE MIR -169 107 2 2 1229 242 257 25 75 chr11 84508224 84508304 -37335552 - MLT1C LTR MaLR -337 130 55 3 1229 1219 55 7 0 chr11 84508354 84508500 -37335356 - B1_Mus2 SINE Alu 0 147 1 3 1229 185 202 11 56 chr11 84509166 84509255 -37334601 + (CATA)n Simple_repeat Simple_repeat 2 86 0 3 1229 1066 128 67 6 chr11 84509338 84509469 -37334387 + B2_Mm2 SINE B2 2 136 -59 3 1229 225 94 0 0 chr11 84509469 84509501 -37334355 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1229 1066 128 67 6 chr11 84509501 84509549 -37334307 + B2_Mm2 SINE B2 137 192 -3 3 1229 209 235 172 23 chr11 84510222 84510309 -37333547 + MIRb SINE MIR 39 138 -130 3 1229 200 351 0 0 chr11 84510427 84510484 -37333372 + L2c LINE L2 3283 3339 -48 3 1229 209 260 0 13 chr11 84510742 84510820 -37333036 + (TGGG)n Simple_repeat Simple_repeat 2 78 0 3 1229 260 273 102 57 chr11 84512082 84512247 -37331609 - MIRb SINE MIR -96 180 7 3 1229 206 32 0 31 chr11 84513085 84513117 -37330739 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1229 1230 29 0 0 chr11 84513117 84513255 -37330601 - B1_Mm SINE Alu -8 139 2 4 1229 887 140 157 54 chr11 84513440 84513644 -37330212 + URR1B DNA MER1_type 1 225 0 4 1229 315 302 77 8 chr11 84514121 84514238 -37329618 + B1F1 SINE Alu 14 138 -11 4 1229 267 325 0 0 chr11 84514324 84514401 -37329455 + (CATA)n Simple_repeat Simple_repeat 4 80 0 4 1229 223 261 0 28 chr11 84515765 84515836 -37328020 + G-rich Low_complexity Low_complexity 4 72 0 4 1229 378 0 0 0 chr11 84515839 84515881 -37327975 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1229 450 0 0 0 chr11 84516341 84516391 -37327465 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1229 247 317 122 34 chr11 84517115 84517200 -37326656 + MIRc SINE MIR 3 95 -173 4 1229 2004 108 81 47 chr11 84517200 84517559 -37326297 + Lx LINE L1 6284 6654 0 4 1229 247 317 122 34 chr11 84517559 84517620 -37326236 + MIRc SINE MIR 96 162 -106 4 1229 506 254 122 8 chr11 84517935 84518058 -37325798 - B1_Mur1 SINE Alu -11 138 2 4 1229 787 264 26 80 chr11 84518062 84518122 -37325734 - ID_B1 SINE B4 -3 221 164 5 1229 2391 150 19 0 chr11 84518122 84518489 -37325367 - ORR1D1 LTR MaLR 0 374 1 5 1229 787 264 26 80 chr11 84518489 84518654 -37325202 - ID_B1 SINE B4 -61 163 8 5 1229 877 178 0 14 chr11 84519153 84519301 -37324555 + B1_Mur1 SINE Alu 3 148 -1 5 1229 209 225 0 0 chr11 84519814 84519854 -37324002 - MIR SINE MIR -91 117 78 5 1229 216 280 0 0 chr11 84520770 84520820 -37323036 - L3b LINE CR1 -208 274 225 5 1229 189 0 0 0 chr11 84521273 84521294 -37322562 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 5 1229 236 309 0 0 chr11 84521671 84521726 -37322130 + polypurine Low_complexity Low_complexity 2 56 0 5 1229 276 307 0 65 chr11 84523025 84523133 -37320723 - MamRep434 DNA TcMar -5 421 321 5 1229 241 238 0 0 chr11 84523610 84523652 -37320204 - ID4_ SINE ID -15 68 27 5 1229 423 349 122 53 chr11 84524202 84524562 -37319294 + L1M5 LINE L1 5351 5735 -427 5 1229 597 297 57 43 chr11 84524844 84525055 -37318801 + ID_B1 SINE B4 10 223 -1 6 1229 366 355 67 40 chr11 84526047 84526270 -37317586 + L4 LINE RTE 1002 1230 -799 6 1229 593 254 0 0 chr11 84526768 84526878 -37316978 + PB1D10 SINE Alu 3 112 -5 6 1229 250 329 0 12 chr11 84526891 84526974 -37316882 + GA-rich Low_complexity Low_complexity 2 83 0 6 1229 206 310 140 8 chr11 84527006 84527131 -37316725 + MIR SINE MIR 30 175 -101 6 1229 521 88 12 0 chr11 84527305 84527385 -37316471 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1229 772 369 13 46 chr11 84527845 84528240 -37315616 + L4 LINE RTE 1440 1821 -208 6 1229 242 293 0 0 chr11 84528365 84528423 -37315433 + L2b LINE L2 3317 3374 -1 6 1229 289 264 37 104 chr11 84528521 84528561 -37315295 - BC1_Mm scRNA scRNA -25 127 83 6 1229 372 228 115 29 chr11 84528561 84528665 -37315191 - PB1D10 SINE Alu 0 117 5 6 1229 289 264 37 104 chr11 84528665 84528694 -37315162 - BC1_Mm scRNA scRNA -70 82 62 6 1229 1647 26 0 20 chr11 84528694 84528889 -37314967 + B2_Mm1a SINE B2 1 191 -2 6 1229 289 264 37 104 chr11 84528889 84528953 -37314903 - BC1_Mm scRNA scRNA -91 61 2 6 1229 250 203 71 86 chr11 84528988 84529058 -37314798 - ORR1D2 LTR MaLR 0 370 302 7 1229 508 335 0 24 chr11 84529058 84529223 -37314633 + RSINE1 SINE B4 2 162 -3 7 1229 1235 48 0 0 chr11 84529253 84529400 -37314456 - B1_Mus1 SINE Alu 0 148 2 7 1229 978 93 0 0 chr11 84529538 84529677 -37314179 + (GAAAA)n Simple_repeat Simple_repeat 3 141 0 7 1229 618 232 162 15 chr11 84530106 84530303 -37313553 + MER33 DNA MER1_type 1 226 -98 7 1229 932 170 0 13 chr11 84530314 84530463 -37313393 + B1_Mus1 SINE Alu 1 147 -1 7 1229 365 217 0 144 chr11 84530500 84530597 -37313259 - RSINE1 SINE B4 -1 164 82 7 1229 252 86 0 0 chr11 84530686 84530721 -37313135 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1229 226 281 16 0 chr11 84530770 84530834 -37313022 - ID4_ SINE ID -18 65 1 7 1229 586 238 16 0 chr11 84530923 84531045 -37312811 - RSINE1 SINE B4 -14 151 28 7 1229 22 56 0 0 chr11 84531050 84531086 -37312770 + AT_rich Low_complexity Low_complexity 1 36 0 8 1229 504 263 143 0 chr11 84531086 84531219 -37312637 - RSINE1 SINE B4 -10 155 4 8 1229 1116 81 0 0 chr11 84531278 84531414 -37312442 - B1_Mus1 SINE Alu -8 140 5 8 1229 229 241 92 67 chr11 84531440 84531522 -37312334 + L1M5 LINE L1 5611 5688 -436 8 1229 857 179 43 0 chr11 84531522 84531662 -37312194 - B1_Mur1 SINE Alu 0 149 4 8 1229 229 241 92 67 chr11 84531662 84531699 -37312157 + L1M5 LINE L1 5689 5733 -391 8 1229 343 258 111 83 chr11 84532051 84532195 -37311661 + L1M5 LINE L1 5312 5459 -665 8 1229 468 0 0 0 chr11 84532207 84532259 -37311597 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1229 845 172 34 7 chr11 84532776 84532922 -37310934 + RSINE1 SINE B4 16 165 0 8 1229 203 179 0 0 chr11 84532928 84532967 -37310889 + A-rich Low_complexity Low_complexity 1 39 0 8 1229 460 313 32 32 chr11 84532982 84533001 -37310855 + MIR SINE MIR 63 80 -182 8 1229 1926 98 159 34 chr11 84533001 84533327 -37310529 + ORR1B2 LTR MaLR 1 367 0 9 1229 460 320 25 41 chr11 84533327 84533500 -37310356 + MIR SINE MIR 81 248 -20 8 1229 853 185 7 0 chr11 84533608 84533754 -37310102 + B1_Mus1 SINE Alu 1 147 -1 9 1229 210 71 0 0 chr11 84533755 84533783 -37310073 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 9 1229 207 162 0 0 chr11 84533816 84533853 -37310003 + GA-rich Low_complexity Low_complexity 1 37 0 9 1229 1078 232 9 19 chr11 84534039 84534254 -37309602 + ID_B1 SINE B4 12 224 0 9 1229 799 75 0 16 chr11 84534262 84534384 -37309472 + (GGA)n Simple_repeat Simple_repeat 2 121 0 9 1229 1449 82 0 15 chr11 84534385 84534582 -37309274 + B2_Mm2 SINE B2 2 195 0 9 1229 302 342 78 21 chr11 84534605 84534796 -37309060 + MIRc SINE MIR 20 221 -47 9 1229 419 350 34 48 chr11 84534914 84535121 -37308735 - MIRb SINE MIR -36 232 29 9 1229 333 118 0 0 chr11 84535151 84535202 -37308654 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1229 274 197 164 0 chr11 84535394 84535455 -37308401 + ID4 SINE ID 10 80 -3 1 1229 270 0 0 0 chr11 84535853 84535883 -37307973 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1229 231 194 32 16 chr11 84536385 84536448 -37307408 + CT-rich Low_complexity Low_complexity 2 65 0 1 1229 207 0 0 0 chr11 84536676 84536699 -37307157 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1229 222 37 0 0 chr11 84536838 84536865 -37306991 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1229 198 91 0 0 chr11 84538574 84538607 -37305249 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1229 250 308 94 19 chr11 84538813 84538919 -37304937 - MIRb SINE MIR -35 233 120 1 1229 519 17 0 0 chr11 84539339 84539399 -37304457 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1229 825 323 9 5 chr11 84541077 84541298 -37302558 - MIR SINE MIR -21 241 20 1 1230 219 282 165 133 chr11 84541553 84541663 -37302193 + MIR3 SINE MIR 2 126 -82 1 1230 746 193 13 27 chr11 84541663 84541812 -37302044 - B1_Mur4 SINE Alu -1 149 3 1 1230 219 282 165 133 chr11 84541812 84541889 -37301967 + MIR3 SINE MIR 127 195 -13 1 1230 208 0 62 0 chr11 84541940 84541972 -37301884 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1230 306 0 0 0 chr11 84543134 84543168 -37300688 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1230 441 0 0 0 chr11 84544323 84544372 -37299484 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1230 507 56 0 0 chr11 84544372 84544442 -37299414 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1230 454 282 112 96 chr11 84544750 84544797 -37299059 + B4 SINE B4 29 219 -73 1 1230 896 163 14 0 chr11 84544797 84544938 -37298918 + B1_Mur4 SINE Alu 1 143 -7 1 1230 308 267 67 0 chr11 84545213 84545303 -37298553 - MIRc SINE MIR -159 109 14 1 1230 234 278 0 0 chr11 84546650 84546704 -37297152 + L2a LINE L2 3371 3424 -2 1 1230 327 306 66 86 chr11 84546712 84546909 -37296947 - MIRb SINE MIR -67 201 9 1 1230 367 110 0 47 chr11 84547153 84547239 -37296617 + (CAGAGA)n Simple_repeat Simple_repeat 1 82 0 1 1230 894 95 0 8 chr11 84547479 84547606 -37296250 - B1_Mus1 SINE Alu -2 146 21 1 1230 387 225 102 96 chr11 84547606 84547626 -37296230 - B4A SINE B4 -59 187 76 1 1230 221 0 35 0 chr11 84547996 84548025 -37295831 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1230 710 207 68 7 chr11 84548905 84549051 -37294805 + RSINE1 SINE B4 3 157 -8 1 1230 265 239 28 56 chr11 84549336 84549407 -37294449 + MER5A DNA MER1_type 3 71 -118 1 1230 832 223 103 5 chr11 84549927 84550121 -37293735 - MTEa LTR MaLR 0 379 167 1 1230 245 328 0 0 chr11 84550138 84550199 -37293657 - MT2A LTR ERVL -411 122 62 1 1230 201 418 60 12 chr11 84550732 84550899 -37292957 + L4 LINE RTE 1740 1914 -115 1 1230 543 164 47 0 chr11 84551690 84551791 -37292065 + B1_Mur3 SINE Alu 1 107 -13 1 1230 343 275 9 52 chr11 84551692 84551807 -37292049 + MT2B2 LTR ERVL 167 276 -308 1 1230 318 235 29 0 chr11 84551817 84551885 -37291971 + ID4 SINE ID 1 70 -13 1 1230 186 209 0 0 chr11 84551885 84551928 -37291928 + GA-rich Low_complexity Low_complexity 3 45 0 1 1230 344 260 13 0 chr11 84551946 84552023 -37291833 + MIRc SINE MIR 48 125 -143 1 1230 783 152 0 46 chr11 84552049 84552180 -37291676 - B1_Mur4 SINE Alu -24 126 2 1 1230 513 0 0 0 chr11 84552821 84552878 -37290978 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1230 280 248 153 76 chr11 84553006 84553150 -37290706 + MIRb SINE MIR 34 188 -80 1 1230 399 317 39 65 chr11 84553155 84553310 -37290546 + B4A SINE B4 69 219 -73 1 1230 822 182 15 0 chr11 84553177 84553314 -37290542 + B1F2 SINE Alu 7 145 -4 1 1230 722 147 340 0 chr11 84553811 84553961 -37289895 - B3 SINE B2 -14 202 2 1 1230 413 363 13 52 chr11 84554483 84554637 -37289219 + MLT1K LTR MaLR 225 372 -223 1 1230 1509 53 16 5 chr11 84554781 84554970 -37288886 - B2_Mm2 SINE B2 -2 193 3 1 1230 637 235 0 11 chr11 84555001 84555182 -37288674 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1230 499 18 0 0 chr11 84555182 84555239 -37288617 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1230 543 285 12 90 chr11 84555346 84555512 -37288344 + ID_B1 SINE B4 9 161 -63 1 1230 271 315 46 69 chr11 84556444 84556618 -37287238 + MLT1I LTR MaLR 242 411 0 1 1230 307 289 13 0 chr11 84556826 84556902 -37286954 - ID4 SINE ID -6 77 1 1 1230 285 98 0 0 chr11 84556911 84556952 -37286904 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1230 466 346 6 0 chr11 84556956 84557179 -37286677 + (TG)n Simple_repeat Simple_repeat 1 224 0 1 1230 524 298 5 0 chr11 84557191 84557418 -37286438 + (TG)n Simple_repeat Simple_repeat 1 228 0 1 1230 684 261 117 19 chr11 84557450 84557716 -37286140 - B4A SINE B4 0 292 1 1 1230 191 307 124 11 chr11 84557776 84557865 -37285991 - MIR3 SINE MIR -32 176 78 1 1230 316 250 42 0 chr11 84559269 84559341 -37284515 - L1MEg LINE L1 -4160 1924 1850 1 1230 1045 83 21 0 chr11 84559345 84559489 -37284367 - B1_Mus1 SINE Alu 0 148 2 1 1230 323 270 79 10 chr11 84559899 84560000 -37283856 + MIRb SINE MIR 10 117 -151 1 1230 616 292 19 147 chr11 84561012 84561373 -37282483 + MTE2a LTR MaLR 1 315 -64 1 1230 596 183 25 0 chr11 84561370 84561490 -37282366 - ORR1D2 LTR MaLR -245 125 3 1 1230 279 325 51 36 chr11 84561654 84561815 -37282041 - MIRb SINE MIR -94 174 3 1 1230 1026 83 14 0 chr11 84562063 84562207 -37281649 - B1_Mus2 SINE Alu 0 147 2 1 1230 225 336 56 48 chr11 84562330 84562455 -37281401 + MIRb SINE MIR 26 151 -117 1 1230 1010 94 12 12 chr11 84562599 84562771 -37281085 + (TCC)n Simple_repeat Simple_repeat 2 173 0 1 1230 202 143 20 20 chr11 84562771 84562821 -37281035 + CT-rich Low_complexity Low_complexity 2 51 0 1 1230 181 296 0 0 chr11 84563145 84563189 -37280667 - L3b LINE CR1 -83 399 356 1 1230 1440 221 55 25 chr11 84563560 84563926 -37279930 + MTE2b LTR MaLR 3 379 0 1 1230 21 0 0 0 chr11 84564337 84564358 -37279498 + GC_rich Low_complexity Low_complexity 1 21 0 1 1230 21 0 0 0 chr11 84564860 84564881 -37278975 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 305 311 6 101 chr11 84565565 84565649 -37278207 + B4 SINE B4 3 79 -213 1 1230 1373 230 42 14 chr11 84565649 84566006 -37277850 + ORR1D2 LTR MaLR 1 367 -3 1 1230 1085 124 31 31 chr11 84566006 84566197 -37277659 + B2_Mm2 SINE B2 1 191 -4 1 1230 305 311 6 101 chr11 84566197 84566209 -37277647 + B4 SINE B4 80 83 -209 1 1230 211 343 27 54 chr11 84566209 84566320 -37277536 + PB1D10 SINE Alu 3 110 -7 1 1230 195 122 61 0 chr11 84566371 84566420 -37277436 + GA-rich Low_complexity Low_complexity 2 53 0 1 1230 1439 214 139 0 chr11 84566896 84567227 -37276629 - MTD LTR MaLR -30 389 13 1 1230 261 139 0 0 chr11 84567227 84567270 -37276586 + (GGA)n Simple_repeat Simple_repeat 2 44 0 1 1230 193 333 0 0 chr11 84567393 84567468 -37276388 + MIRc SINE MIR 69 143 -125 1 1230 670 260 9 52 chr11 84567593 84567824 -37276032 - ID_B1 SINE B4 -1 223 3 1 1230 180 216 198 83 chr11 84568172 84568293 -37275563 - MIRm SINE MIR -131 145 11 1 1230 300 70 0 0 chr11 84568777 84568820 -37275036 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1230 357 24 0 0 chr11 84568832 84568874 -37274982 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1230 385 241 86 0 chr11 84568899 84569015 -37274841 - B2_Mm2 SINE B2 -69 126 1 1 1230 407 333 0 0 chr11 84569057 84569159 -37274697 - ID_B1 SINE B4 -112 112 11 1 1230 303 274 27 0 chr11 84569291 84569364 -37274492 + ID4_ SINE ID 5 79 -4 1 1230 2097 121 53 3 chr11 84569469 84569810 -37274046 - ORR1B2 LTR MaLR -9 358 1 1 1230 928 296 7 3 chr11 84570818 84571103 -37272753 + B4A SINE B4 1 286 -6 1 1230 396 59 0 0 chr11 84571117 84571168 -37272688 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1230 819 239 47 42 chr11 84571174 84571388 -37272468 + ID_B1 SINE B4 10 224 0 1 1230 373 399 0 7 chr11 84571769 84571923 -37271933 + MIR SINE MIR 13 165 -97 1 1230 351 161 16 0 chr11 84571928 84571990 -37271866 + URR1B DNA MER1_type 1 63 -162 1 1230 323 256 13 0 chr11 84572129 84572207 -37271649 - ID4 SINE ID -1 82 4 1 1230 290 169 33 11 chr11 84572718 84572808 -37271048 + CT-rich Low_complexity Low_complexity 1 92 0 1 1230 248 281 0 0 chr11 84572813 84572877 -37270979 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1230 451 78 0 25 chr11 84572913 84572992 -37270864 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1230 884 214 5 40 chr11 84573567 84573767 -37270089 - B3A SINE B2 -4 194 2 1 1230 244 296 57 12 chr11 84573777 84573921 -37269935 + MIRb SINE MIR 90 242 -26 1 1230 259 302 17 50 chr11 84574127 84574308 -37269548 + (TATG)n Simple_repeat Simple_repeat 4 178 0 1 1230 350 252 30 10 chr11 84574963 84575063 -37268793 + MIR3 SINE MIR 57 158 -50 1 1230 246 276 0 7 chr11 84575708 84575782 -37268074 + MIRb SINE MIR 188 260 -8 1 1230 378 0 0 0 chr11 84576150 84576192 -37267664 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1230 948 108 70 0 chr11 84576394 84576552 -37267304 + B2_Mm1t SINE B2 21 189 -4 1 1230 21 0 0 0 chr11 84576652 84576673 -37267183 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 273 288 34 67 chr11 84576676 84576795 -37267061 + PB1D10 SINE Alu 1 115 -2 1 1230 1116 112 0 87 chr11 84576935 84577131 -37266725 + B2_Mm2 SINE B2 1 179 -16 1 1230 639 0 0 0 chr11 84577151 84577222 -37266634 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1 1230 245 309 15 0 chr11 84577710 84577778 -37266078 + MIRc SINE MIR 85 153 -115 1 1230 185 356 32 57 chr11 84580341 84580499 -37263357 - MIRb SINE MIR -32 236 83 2 1230 576 42 0 0 chr11 84580972 84581043 -37262813 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1230 484 270 25 25 chr11 84582338 84582501 -37261355 + RSINE1 SINE B4 3 165 0 2 1230 648 140 0 0 chr11 84582552 84582659 -37261197 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 2 1230 289 301 0 61 chr11 84582667 84582766 -37261090 + ID_B1 SINE B4 73 165 -59 2 1230 516 111 0 0 chr11 84583378 84583459 -37260397 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1230 189 0 0 0 chr11 84584267 84584288 -37259568 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 2 1230 362 276 88 13 chr11 84584331 84584497 -37259359 - MIRb SINE MIR -64 204 19 2 1230 396 0 0 0 chr11 84586639 84586683 -37257173 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1230 38 68 0 0 chr11 84586884 84586957 -37256899 + AT_rich Low_complexity Low_complexity 1 73 0 2 1230 218 105 0 26 chr11 84586979 84587018 -37256838 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2 1230 440 259 42 17 chr11 84587064 84587182 -37256674 - RSINE1 SINE B4 -44 121 1 2 1230 341 185 27 0 chr11 84587182 84587254 -37256602 + B1F SINE Alu 36 90 -59 2 1230 243 348 108 42 chr11 84587550 84587670 -37256186 + MIR3 SINE MIR 61 188 -20 2 1230 221 342 8 50 chr11 84587705 84587825 -37256031 + MIRb SINE MIR 38 152 -116 2 1230 821 235 35 105 chr11 84588095 84588409 -37255447 - B4 SINE B4 0 292 1 2 1230 212 59 29 0 chr11 84588563 84588597 -37255259 + (CCCCAG)n Simple_repeat Simple_repeat 4 38 0 2 1230 329 22 0 43 chr11 84588905 84588952 -37254904 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1230 720 246 117 16 chr11 84590010 84590266 -37253590 + ORR1E LTR MaLR 43 324 -35 2 1230 590 145 212 8 chr11 84590659 84590777 -37253079 + B1_Mur1 SINE Alu 3 144 -5 2 1230 650 173 8 0 chr11 84591461 84591594 -37252262 + CT-rich Low_complexity Low_complexity 1 134 0 2 1230 470 243 0 24 chr11 84591625 84591743 -37252113 - PB1 SINE Alu 0 127 12 2 1230 438 290 9 9 chr11 84591819 84591927 -37251929 - RSINE1 SINE B4 -31 134 27 2 1230 1338 71 22 0 chr11 84591928 84592112 -37251744 + B2_Mm1a SINE B2 2 189 -4 2 1230 653 170 34 34 chr11 84592131 84592277 -37251579 - B2_Mm2 SINE B2 -6 189 44 2 1230 200 214 0 23 chr11 84592333 84592376 -37251480 + CT-rich Low_complexity Low_complexity 2 43 0 2 1230 225 176 19 19 chr11 84592376 84592428 -37251428 - B2_Mm2 SINE B2 -143 52 1 2 1230 324 0 0 0 chr11 84593115 84593151 -37250705 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1230 313 263 26 0 chr11 84593202 84593278 -37250578 + MIR3 SINE MIR 110 187 -21 2 1230 180 0 0 0 chr11 84593915 84593935 -37249921 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 2 1230 216 0 0 0 chr11 84594015 84594039 -37249817 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 1230 182 296 100 42 chr11 84594790 84594910 -37248946 - MIRm SINE MIR -125 151 25 2 1230 354 225 10 110 chr11 84595062 84595162 -37248694 + RSINE1 SINE B4 42 131 -34 2 1230 396 0 0 0 chr11 84595203 84595247 -37248609 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1230 736 201 43 7 chr11 84595292 84595432 -37248424 + B1_Mur4 SINE Alu 1 145 -5 2 1230 1100 299 43 8 chr11 84595448 84595845 -37248011 + L1MB8 LINE L1 5768 6178 0 2 1230 27 0 0 0 chr11 84595886 84595913 -37247943 + AT_rich Low_complexity Low_complexity 1 27 0 2 1230 384 297 63 42 chr11 84595931 84596170 -37247686 + L1MB7 LINE L1 5931 6174 -10 2 1230 821 215 120 0 chr11 84596176 84596367 -37247489 - ID_B1 SINE B4 -7 217 4 2 1230 264 59 0 0 chr11 84596404 84596438 -37247418 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1230 282 201 26 37 chr11 84596451 84596545 -37247311 + PB1D10 SINE Alu 3 96 -52 2 1230 309 232 99 20 chr11 84596532 84596633 -37247223 - MER5A DNA MER1_type -51 138 30 2 1230 1054 202 56 0 chr11 84596637 84596850 -37247006 + URR1A DNA MER1_type 2 226 0 2 1230 203 156 0 0 chr11 84597248 84597280 -37246576 + GA-rich Low_complexity Low_complexity 2 33 0 2 1230 267 294 54 98 chr11 84597400 84597439 -37246417 - B2_Mm2 SINE B2 0 195 1 2 1230 686 267 12 24 chr11 84597439 84597604 -37246252 - RSINE1 SINE B4 -1 164 2 2 1230 273 57 0 0 chr11 84598641 84598676 -37245180 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2 1230 657 263 45 17 chr11 84598697 84598875 -37244981 - B3A SINE B2 -15 183 1 2 1230 226 204 93 0 chr11 84598879 84598933 -37244923 - ID_B1 SINE B4 -80 144 86 2 1230 369 261 0 0 chr11 84599233 84599348 -37244508 + (TATATG)n Simple_repeat Simple_repeat 2 116 0 2 1230 649 230 11 0 chr11 84599363 84599541 -37244315 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1230 436 284 92 37 chr11 84599632 84599976 -37243880 + L1MA4A LINE L1 5024 5389 -751 2 1230 212 114 57 0 chr11 84600066 84600101 -37243755 + (CGTG)n Simple_repeat Simple_repeat 4 40 0 2 1230 225 0 0 0 chr11 84600103 84600128 -37243728 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1230 1202 28 0 0 chr11 84600277 84600422 -37243434 + B1_Mus2 SINE Alu 2 146 -1 2 1230 260 27 0 26 chr11 84600423 84600461 -37243395 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 1230 522 250 151 11 chr11 84600472 84600658 -37243198 + B3 SINE B2 5 216 0 2 1230 708 292 142 16 chr11 84600690 84601072 -37242784 + L1MA4A LINE L1 5511 5906 -1567 2 1230 623 256 0 22 chr11 84601320 84601456 -37242400 + B1F2 SINE Alu 17 149 0 2 1230 449 205 0 8 chr11 84601524 84601647 -37242209 + (TG)n Simple_repeat Simple_repeat 2 123 0 2 1230 230 392 0 0 chr11 84602626 84602733 -37241123 + L1M5 LINE L1 5715 5821 -303 2 1230 270 287 31 31 chr11 84603041 84603138 -37240718 + ID_B1 SINE B4 80 176 -48 2 1230 509 165 10 30 chr11 84603063 84603163 -37240693 + PB1D9 SINE Alu 23 120 0 2 1230 252 333 114 74 chr11 84603292 84603590 -37240266 + MLT1D LTR MaLR 20 329 -176 2 1230 495 210 94 24 chr11 84603605 84603732 -37240124 + B1F2 SINE Alu 13 148 -1 2 1230 896 248 0 0 chr11 84603802 84604000 -37239856 + B3 SINE B2 1 198 -18 2 1230 234 136 0 0 chr11 84604550 84604594 -37239262 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 2 1230 557 28 14 0 chr11 84604785 84604856 -37239000 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1230 716 200 7 0 chr11 84605494 84605629 -37238227 + RSINE1 SINE B4 10 145 -20 2 1230 185 262 36 36 chr11 84605764 84605847 -37238009 - MIRc SINE MIR -99 169 87 2 1230 243 193 0 66 chr11 84605965 84606026 -37237830 - MIRc SINE MIR -106 162 106 2 1230 341 295 57 0 chr11 84606599 84606704 -37237152 - ORR1E LTR MaLR -248 111 1 2 1230 1321 178 174 34 chr11 84606931 84607281 -37236575 - MTD LTR MaLR -20 399 1 2 1230 247 296 12 12 chr11 84607866 84607948 -37235908 + CT-rich Low_complexity Low_complexity 4 85 0 2 1230 614 256 0 0 chr11 84608416 84608545 -37235311 + RSINE1 SINE B4 2 130 -35 2 1230 369 0 0 0 chr11 84608545 84608586 -37235270 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 1230 22 56 0 0 chr11 84608630 84608666 -37235190 + AT_rich Low_complexity Low_complexity 1 36 0 2 1230 381 288 46 18 chr11 84608899 84609074 -37234782 + MIRb SINE MIR 1 188 -88 2 1230 442 292 0 0 chr11 84609436 84609542 -37234314 + PB1D10 SINE Alu 12 117 0 2 1230 621 238 4 192 chr11 84609548 84609808 -37234048 + ID_B1 SINE B4 4 214 -10 2 1230 325 252 19 5 chr11 84609884 84609978 -37233878 + ID_B1 SINE B4 160 217 -7 2 1230 564 304 38 6 chr11 84609984 84610143 -37233713 + RSINE1 SINE B4 2 165 0 2 1230 294 29 0 0 chr11 84610150 84610185 -37233671 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1230 396 0 0 0 chr11 84610873 84610917 -37232939 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1230 190 338 32 12 chr11 84611187 84611274 -37232582 + MIRm SINE MIR 14 102 -166 2 1230 225 302 0 0 chr11 84611887 84611940 -37231916 + B3 SINE B2 147 199 -17 2 1230 226 270 29 152 chr11 84611950 84612055 -37231801 + MER21B LTR ERV1 333 424 -439 2 1230 855 191 75 25 chr11 84612145 84612344 -37231512 + B3 SINE B2 2 210 -6 2 1230 3127 47 29 3 chr11 84612422 84612808 -37231048 + MTA_Mm LTR MaLR 1 396 0 2 1230 7437 71 22 71 chr11 84612809 84613964 -37229892 + MTA_Mm-int LTR MaLR 1 1098 0 2 1230 3397 48 2 0 chr11 84613964 84614359 -37229497 + MTA_Mm LTR MaLR 1 396 0 2 1230 392 308 48 9 chr11 84614359 84614464 -37229392 + RSINE1 SINE B4 42 150 -15 2 1230 546 273 87 0 chr11 84615425 84615572 -37228284 + ID_B1 SINE B4 84 246 -46 2 1230 236 167 41 14 chr11 84615573 84615646 -37228210 + GA-rich Low_complexity Low_complexity 1 75 0 2 1230 1161 70 0 0 chr11 84616538 84616681 -37227175 + B1_Mus2 SINE Alu 5 147 0 2 1230 392 329 12 49 chr11 84616788 84616951 -37226905 + MIRb SINE MIR 4 160 -108 2 1230 232 154 0 25 chr11 84618320 84618360 -37225496 + L2b LINE L2 3331 3369 -6 2 1230 227 362 0 0 chr11 84618791 84618860 -37224996 + polypurine Low_complexity Low_complexity 1 69 0 2 1230 716 22 0 11 chr11 84618862 84618953 -37224903 + (GAAAA)n Simple_repeat Simple_repeat 1 90 0 2 1230 1654 36 0 10 chr11 84618955 84619150 -37224706 + B2_Mm1a SINE B2 1 193 0 2 1230 699 199 118 31 chr11 84620237 84620398 -37223458 + ID_B1 SINE B4 25 199 -25 2 1230 351 276 85 17 chr11 84620400 84620518 -37223338 + RSINE1 SINE B4 34 159 -6 2 1230 462 114 0 0 chr11 84620518 84620588 -37223268 + (CAT)n Simple_repeat Simple_repeat 2 71 0 2 1230 180 77 0 0 chr11 84621360 84621386 -37222470 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 2 1230 226 291 37 25 chr11 84621859 84621940 -37221916 - MIRb SINE MIR -4 264 183 3 1230 279 293 13 0 chr11 84622068 84622143 -37221713 + PB1D10 SINE Alu 2 77 -40 3 1230 493 311 176 11 chr11 84622150 84622332 -37221524 + ID_B1 SINE B4 7 218 -6 3 1230 1028 32 0 0 chr11 84623047 84623171 -37220685 - B1_Mus1 SINE Alu 0 148 25 3 1230 1468 72 0 10 chr11 84623496 84623691 -37220165 - B2_Mm2 SINE B2 -1 194 2 3 1230 885 157 200 6 chr11 84623711 84623891 -37219965 - B3 SINE B2 0 216 2 3 1230 630 204 169 29 chr11 84623891 84624063 -37219793 - MTD LTR MaLR -211 208 13 3 1230 180 0 0 0 chr11 84624063 84624083 -37219773 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1230 236 53 26 0 chr11 84624358 84624396 -37219460 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1230 449 302 9 0 chr11 84624408 84624514 -37219342 - B1F2 SINE Alu -41 108 2 3 1230 1246 123 11 0 chr11 84624633 84624812 -37219044 + B2_Mm2 SINE B2 1 181 -14 3 1230 545 167 225 0 chr11 84624838 84624958 -37218898 - B1_Mur3 SINE Alu -1 148 2 3 1230 421 266 114 15 chr11 84624992 84625177 -37218679 + B3A SINE B2 1 193 -2 3 1230 404 246 114 15 chr11 84625194 84625326 -37218530 + B1F SINE Alu 4 148 -1 3 1230 290 275 25 0 chr11 84625328 84625408 -37218448 + ID4_ SINE ID 2 83 0 3 1230 831 226 0 18 chr11 84625416 84625583 -37218273 + RSINE1 SINE B4 2 165 0 3 1230 973 136 32 11 chr11 84625662 84625848 -37218008 - B2_Mm2 SINE B2 -5 190 1 3 1230 1081 208 124 29 chr11 84626139 84626485 -37217371 + MTEb LTR MaLR 1 379 0 3 1230 199 233 23 0 chr11 84626583 84626626 -37217230 - L2c LINE L2 -19 3368 3325 3 1230 351 223 214 43 chr11 84626732 84626849 -37217007 + MER20 DNA MER1_type 50 186 -33 3 1230 417 226 218 0 chr11 84626849 84627031 -37216825 + ID_B1 SINE B4 2 223 -1 3 1230 229 208 42 0 chr11 84627102 84627150 -37216706 + MER5B DNA MER1_type 128 177 -1 3 1230 480 35 0 0 chr11 84628123 84628181 -37215675 + (GGGGA)n Simple_repeat Simple_repeat 2 59 0 3 1230 423 232 70 50 chr11 84629017 84629037 -37214819 - PB1D7 SINE Alu -7 113 94 3 1230 1196 124 6 0 chr11 84629037 84629214 -37214642 + B2_Mm2 SINE B2 2 179 -16 3 1230 423 232 70 50 chr11 84629214 84629293 -37214563 - PB1D7 SINE Alu -27 93 13 3 1230 253 301 34 67 chr11 84629218 84629307 -37214549 - B4A SINE B4 -125 167 82 3 1230 187 357 43 0 chr11 84629307 84629377 -37214479 - L2 LINE L2 -569 2850 2778 3 1230 457 147 155 10 chr11 84629686 84629789 -37214067 + RMER10B LTR ERVL 230 347 -51 3 1230 317 261 149 88 chr11 84629859 84629982 -37213874 + B4A SINE B4 94 215 -77 3 1230 261 57 0 0 chr11 84629982 84630017 -37213839 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 3 1230 739 147 41 62 chr11 84630017 84630034 -37213822 + B1_Mus1 SINE Alu 137 147 -1 3 1230 317 261 149 88 chr11 84630034 84630074 -37213782 + B4A SINE B4 216 284 -8 3 1230 185 65 32 0 chr11 84630079 84630110 -37213746 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1230 281 250 49 62 chr11 84630127 84630208 -37213648 + PB1D10 SINE Alu 36 115 -2 3 1230 189 373 42 17 chr11 84630270 84630390 -37213466 - L2 LINE L2 -1159 2260 2138 3 1230 226 250 149 65 chr11 84630390 84630497 -37213359 + BC1_Mm scRNA scRNA 3 118 -34 3 1230 296 322 97 14 chr11 84630499 84630644 -37213212 - L2 LINE L2 -1338 2081 1925 3 1230 913 212 86 0 chr11 84630954 84631152 -37212704 - B3 SINE B2 0 216 2 3 1230 330 240 241 49 chr11 84631154 84631235 -37212621 + MER33 DNA MER1_type 29 137 -187 3 1230 313 200 170 43 chr11 84631235 84631329 -37212527 + PB1D10 SINE Alu 1 106 -11 3 1230 330 240 241 49 chr11 84631329 84631430 -37212426 + MER33 DNA MER1_type 138 261 -63 3 1230 395 260 95 9 chr11 84631430 84631535 -37212321 - PB1D10 SINE Alu 0 117 4 3 1230 330 240 241 49 chr11 84631535 84631596 -37212260 + MER33 DNA MER1_type 262 319 -5 3 1230 740 151 333 0 chr11 84633549 84633708 -37210148 - B3 SINE B2 -4 212 1 3 1230 737 196 0 35 chr11 84633717 84633870 -37209986 - B1_Mur1 SINE Alu -6 143 1 3 1230 356 218 0 173 chr11 84633752 84633885 -37209971 - MT2B LTR ERVL -339 262 153 3 1230 406 281 26 17 chr11 84633888 84634004 -37209852 - B3 SINE B2 -7 209 93 3 1230 366 289 48 24 chr11 84635498 84635643 -37208213 - MIRc SINE MIR -107 161 14 3 1230 209 279 118 0 chr11 84637567 84637635 -37206221 - MIR3 SINE MIR -21 187 112 3 1230 1353 146 22 18 chr11 84637812 84638035 -37205821 - URR1B DNA MER1_type -1 224 1 3 1230 482 260 189 0 chr11 84638136 84638263 -37205593 - RSINE1 SINE B4 -13 152 2 3 1230 281 262 148 9 chr11 84638283 84638391 -37205465 + MER102a DNA MER1_type 147 269 -61 3 1230 299 247 19 0 chr11 84640002 84640105 -37203751 - B1_Mur2 SINE Alu 0 149 13 3 1230 1126 112 0 53 chr11 84640088 84640277 -37203579 + B2_Mm2 SINE B2 9 187 -8 3 1230 675 198 0 0 chr11 84640514 84640773 -37203083 + (TG)n Simple_repeat Simple_repeat 1 259 0 3 1230 510 17 0 0 chr11 84641566 84641625 -37202231 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1230 210 71 0 0 chr11 84641842 84641870 -37201986 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1230 1197 49 0 0 chr11 84643224 84643366 -37200490 + B1_Mus2 SINE Alu 1 142 -5 3 1230 339 256 136 8 chr11 84643422 84643540 -37200316 + ID_B1 SINE B4 83 215 -9 3 1230 287 25 25 0 chr11 84643576 84643616 -37200240 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 3 1230 1028 97 25 19 chr11 84643631 84643789 -37200067 + B2_Mm2 SINE B2 3 161 -34 3 1230 680 113 128 8 chr11 84643805 84643930 -37199926 + B1_Mur4 SINE Alu 11 150 0 3 1230 236 269 138 25 chr11 84644082 84644162 -37199694 + PB1D7 SINE Alu 32 120 0 3 1230 632 242 16 8 chr11 84644173 84644302 -37199554 + B3 SINE B2 1 130 -86 3 1230 399 222 0 47 chr11 84644619 84644704 -37199152 + PB1D7 SINE Alu 6 86 -34 3 1230 226 271 71 0 chr11 84644965 84645035 -37198821 - B4 SINE B4 -9 283 209 3 1230 450 281 21 0 chr11 84645038 84645134 -37198722 + B1_Mur2 SINE Alu 9 106 -43 3 1230 370 263 52 149 chr11 84645195 84645329 -37198527 - RSINE1 SINE B4 -43 122 2 3 1230 425 191 114 0 chr11 84645329 84645432 -37198424 - B4 SINE B4 -66 226 112 3 1230 361 301 68 0 chr11 84647448 84647551 -37196305 - ID_B1 SINE B4 -10 214 105 3 1230 907 207 58 15 chr11 84648449 84648655 -37195201 + B3 SINE B2 2 216 0 3 1230 21 36 0 0 chr11 84648662 84648690 -37195166 + AT_rich Low_complexity Low_complexity 1 28 0 3 1230 805 175 28 0 chr11 84648801 84648944 -37194912 - B1_Mus1 SINE Alu -1 147 1 3 1230 198 0 0 0 chr11 84648955 84648977 -37194879 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1230 1151 70 0 14 chr11 84648979 84649125 -37194731 - B1_Mus1 SINE Alu -4 144 1 3 1230 1211 103 23 6 chr11 84649152 84649328 -37194528 - B2_Mm1t SINE B2 -14 179 1 3 1230 3533 32 95 2 chr11 84649339 84649783 -37194073 - L1Md_F2 LINE L1 -1 6581 6097 3 1230 209 222 0 0 chr11 84649892 84649937 -37193919 + T-rich Low_complexity Low_complexity 1 45 0 3 1230 1157 75 0 0 chr11 84650308 84650455 -37193401 + B1_Mus1 SINE Alu 1 147 -1 3 1230 292 273 96 109 chr11 84650549 84650705 -37193151 + MT2B LTR ERVL 104 257 -327 3 1230 635 250 44 0 chr11 84650613 84650749 -37193107 + B1_Mus1 SINE Alu 7 148 0 3 1230 1208 131 16 10 chr11 84650762 84650955 -37192901 + B2_Mm2 SINE B2 2 195 0 3 1230 786 200 200 0 chr11 84651027 84651207 -37192649 + B3 SINE B2 1 216 0 3 1230 326 184 0 0 chr11 84651259 84651308 -37192548 - B1_Mus2 SINE Alu -97 50 2 3 1230 214 268 103 90 chr11 84651597 84651675 -37192181 + B4A SINE B4 71 149 -143 3 1230 392 195 172 26 chr11 84651632 84651679 -37192177 + B1F SINE Alu 14 74 -75 3 1230 621 246 7 7 chr11 84651679 84651822 -37192034 - B1_Mur3 SINE Alu -6 143 1 3 1230 392 195 172 26 chr11 84651822 84651890 -37191966 + B1F SINE Alu 75 145 -4 3 1230 22 70 0 0 chr11 84651891 84651934 -37191922 + AT_rich Low_complexity Low_complexity 1 43 0 3 1230 913 162 7 7 chr11 84651938 84652087 -37191769 + B1_Mur4 SINE Alu 2 150 0 3 1230 22 35 0 0 chr11 84652200 84652229 -37191627 + AT_rich Low_complexity Low_complexity 1 29 0 3 1230 509 215 161 0 chr11 84652478 84652608 -37191248 + Charlie1a DNA MER1_type 432 582 -873 3 1230 266 0 29 0 chr11 84652609 84652643 -37191213 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1230 1196 68 0 0 chr11 84652643 84652790 -37191066 + B1_Mm SINE Alu 1 147 0 3 1230 221 0 35 0 chr11 84652806 84652835 -37191021 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1230 1162 96 37 48 chr11 84652950 84653137 -37190719 - B2_Mm2 SINE B2 -2 193 9 3 1230 378 0 0 0 chr11 84654044 84654086 -37189770 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1230 321 180 0 0 chr11 84655185 84655235 -37188621 + PB1D9 SINE Alu 42 91 -29 3 1230 1304 82 49 0 chr11 84655514 84655697 -37188159 - B2_Mm1t SINE B2 0 193 2 3 1230 513 0 0 0 chr11 84655803 84655860 -37187996 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1230 208 176 20 0 chr11 84655861 84655912 -37187944 + A-rich Low_complexity Low_complexity 2 53 0 3 1230 774 149 0 43 chr11 84656305 84656445 -37187411 + B1_Mur4 SINE Alu 2 135 -15 3 1230 613 289 20 15 chr11 84656446 84656643 -37187213 + B3A SINE B2 1 198 0 3 1230 593 309 75 9 chr11 84656668 84656880 -37186976 + B4A SINE B4 1 226 -66 3 1230 216 0 0 0 chr11 84656883 84656907 -37186949 + (TGGGGG)n Simple_repeat Simple_repeat 5 28 0 3 1230 312 251 68 68 chr11 84657327 84657519 -37186337 + L1M3 LINE L1 4970 5161 -979 3 1230 472 308 118 34 chr11 84657525 84657703 -37186153 + B3A SINE B2 2 194 -4 3 1230 702 211 7 34 chr11 84657720 84657867 -37185989 + B1_Mur3 SINE Alu 1 143 -6 4 1230 267 229 14 14 chr11 84657872 84657943 -37185913 + GA-rich Low_complexity Low_complexity 4 74 0 4 1230 282 274 119 0 chr11 84658024 84658108 -37185748 + PB1D10 SINE Alu 1 94 -23 4 1230 475 271 8 33 chr11 84658175 84658297 -37185559 + B1_Mm SINE Alu 1 119 -28 4 1230 239 0 0 31 chr11 84658328 84658360 -37185496 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1230 513 184 53 0 chr11 84658370 84658484 -37185372 + PB1D9 SINE Alu 1 120 0 4 1230 237 217 29 118 chr11 84658504 84658572 -37185284 - B1_Mur1 SINE Alu -26 123 62 4 1230 259 206 143 19 chr11 84658676 84658815 -37185041 + L1M3 LINE L1 5343 5497 -683 3 1230 800 167 0 0 chr11 84658901 84659027 -37184829 + B1_Mur2 SINE Alu 9 134 -15 4 1230 1066 76 23 6 chr11 84659028 84659200 -37184656 + (GAGAA)n Simple_repeat Simple_repeat 3 177 0 4 1230 329 145 16 0 chr11 84659200 84659262 -37184594 + GA-rich Low_complexity Low_complexity 3 65 0 4 1230 467 295 106 35 chr11 84659262 84659560 -37184296 + L1MC4 LINE L1 942 1229 -4986 4 1230 762 169 11 17 chr11 84659590 84659771 -37184085 + GA-rich Low_complexity Low_complexity 1 180 0 4 1230 365 274 0 78 chr11 84659781 84659884 -37183972 + MT2B LTR ERVL 163 257 -344 4 1230 625 72 12 0 chr11 84659803 84659886 -37183970 + B1_Mus1 SINE Alu 22 105 -43 4 1230 454 310 18 65 chr11 84659959 84660128 -37183728 + RSINE1 SINE B4 2 162 -3 4 1230 1148 36 58 0 chr11 84660208 84660347 -37183509 - B1_Mus2 SINE Alu 0 147 1 4 1230 3010 152 52 43 chr11 84660371 84660926 -37182930 + RLTR17 LTR ERVK 1 560 -132 4 1230 1072 206 118 64 chr11 84660977 84661403 -37182453 + RMER3D-int LTR ERVK 10 775 -2067 4 1230 6272 192 88 52 chr11 84661549 84663312 -37180544 + RMER3D-int LTR ERVK 1016 2842 0 4 1230 3408 166 74 35 chr11 84663312 84663978 -37179878 + RLTR17 LTR ERVK 1 692 0 4 1230 415 250 43 0 chr11 84663989 84664081 -37179775 + L1M3 LINE L1 5684 5779 -389 3 1230 360 0 0 0 chr11 84664088 84664128 -37179728 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1230 295 396 0 59 chr11 84664144 84664262 -37179594 + PB1 SINE Alu 1 111 -16 4 1230 1370 92 0 16 chr11 84664405 84664593 -37179263 + B2_Mm2 SINE B2 2 186 -9 4 1230 834 196 7 7 chr11 84664780 84664924 -37178932 + B1_Mus1 SINE Alu 1 144 -4 4 1230 448 261 40 35 chr11 84664973 84665149 -37178707 + B3 SINE B2 8 214 -2 4 1230 580 270 46 26 chr11 84665153 84665305 -37178551 + RSINE1 SINE B4 9 163 -2 4 1230 655 167 135 0 chr11 84665735 84665861 -37177995 - B1_Mur3 SINE Alu 0 149 7 4 1230 1028 82 0 52 chr11 84666104 84666259 -37177597 + B1_Mus2 SINE Alu 1 147 0 4 1230 275 143 200 0 chr11 84666324 84666394 -37177462 - PB1D10 SINE Alu -10 107 24 4 1230 584 253 90 7 chr11 84666340 84666495 -37177361 - ID_B1 SINE B4 -55 169 2 4 1230 180 97 0 0 chr11 84666545 84666576 -37177280 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1230 22 0 0 0 chr11 84666603 84666625 -37177231 + AT_rich Low_complexity Low_complexity 1 22 0 4 1230 1125 83 14 0 chr11 84666666 84666811 -37177045 - B1_Mus2 SINE Alu 0 147 1 4 1230 587 240 32 32 chr11 84666912 84667037 -37176819 + B3A SINE B2 14 138 -60 4 1230 365 0 0 22 chr11 84667065 84667111 -37176745 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1230 495 176 43 61 chr11 84667130 84667245 -37176611 + PB1D9 SINE Alu 3 115 -5 4 1230 627 14 0 0 chr11 84667267 84667339 -37176517 + (GGAGA)n Simple_repeat Simple_repeat 4 75 0 4 1230 1119 55 14 14 chr11 84669004 84669151 -37174705 - B1_Mus2 SINE Alu 0 147 1 4 1230 189 0 0 0 chr11 84669521 84669542 -37174314 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 4 1230 513 240 23 69 chr11 84670302 84670432 -37173424 + ID_B1 SINE B4 99 222 -2 4 1230 1164 68 7 0 chr11 84670626 84670772 -37173084 + B1_Mus2 SINE Alu 1 147 0 4 1230 306 277 84 0 chr11 84671030 84671113 -37172743 + PB1 SINE Alu 36 125 -2 4 1230 647 174 26 17 chr11 84671151 84671268 -37172588 - B1_Mur1 SINE Alu 0 149 32 4 1230 24 32 0 0 chr11 84671301 84671332 -37172524 + AT_rich Low_complexity Low_complexity 1 31 0 4 1231 222 234 21 0 chr11 84672666 84672713 -37171143 + CT-rich Low_complexity Low_complexity 2 49 0 4 1231 569 91 0 22 chr11 84672807 84672897 -37170959 + (GAAAA)n Simple_repeat Simple_repeat 2 89 0 4 1231 375 318 83 53 chr11 84673124 84673257 -37170599 - RSINE1 SINE B4 0 165 29 4 1231 688 350 83 20 chr11 84673307 84673750 -37170106 + L2 LINE L2 2593 3063 -356 4 1231 1138 42 35 0 chr11 84674706 84674848 -37169008 + B1_Mus1 SINE Alu 1 147 -1 4 1231 534 103 0 0 chr11 84674848 84674926 -37168930 + (TATG)n Simple_repeat Simple_repeat 3 80 0 4 1231 267 309 0 0 chr11 84674931 84674999 -37168857 - ID4 SINE ID -15 68 1 4 1231 1394 88 10 5 chr11 84675009 84675203 -37168653 - B2_Mm2 SINE B2 0 195 1 4 1231 201 95 0 87 chr11 84675420 84675489 -37168367 + GA-rich Low_complexity Low_complexity 5 67 0 4 1231 405 202 241 17 chr11 84675529 84675645 -37168211 + B1_Mur1 SINE Alu 7 148 -1 4 1231 561 308 0 15 chr11 84675989 84676124 -37167732 - RSINE1 SINE B4 -29 136 4 4 1231 258 247 86 86 chr11 84676221 84676314 -37167542 + MIR SINE MIR 92 184 -78 4 1231 588 290 7 28 chr11 84676430 84676572 -37167284 + RSINE1 SINE B4 6 144 -21 4 1231 237 279 11 151 chr11 84676631 84676724 -37167132 + ID4_ SINE ID 2 81 -2 4 1231 998 189 34 0 chr11 84677184 84677359 -37166497 + B3 SINE B2 2 182 -34 4 1231 614 306 58 67 chr11 84677537 84677761 -37166095 + ID_B1 SINE B4 3 224 0 4 1231 230 175 0 0 chr11 84677778 84677818 -37166038 - B1F SINE Alu -98 51 12 4 1231 221 258 210 0 chr11 84677818 84677831 -37166025 - ID_B1 SINE B4 -70 127 80 4 1231 685 199 43 0 chr11 84678070 84678211 -37165645 - B1_Mus1 SINE Alu 0 148 2 4 1231 287 301 8 117 chr11 84678434 84678480 -37165376 + MT2B2 LTR ERVL 127 158 -426 4 1231 503 267 0 0 chr11 84678480 84678570 -37165286 + PB1D10 SINE Alu 1 90 -27 4 1231 190 0 67 0 chr11 84678733 84678763 -37165093 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1231 687 275 30 53 chr11 84678976 84679145 -37164711 + RSINE1 SINE B4 1 165 0 4 1231 1110 147 39 25 chr11 84679249 84679452 -37164404 + B3 SINE B2 7 212 -4 4 1231 588 291 14 14 chr11 84680408 84680551 -37163305 - RSINE1 SINE B4 -20 145 3 4 1231 246 361 28 0 chr11 84680823 84680895 -37162961 + AluG_3 SINE Alu 147 220 -91 4 1231 508 295 44 19 chr11 84680905 84681064 -37162792 + RSINE1 SINE B4 3 165 0 4 1231 271 274 0 0 chr11 84681064 84681126 -37162730 + (CATA)n Simple_repeat Simple_repeat 1 62 0 4 1231 237 159 0 0 chr11 84683513 84683557 -37160299 + (CTG)n Simple_repeat Simple_repeat 3 46 0 4 1231 198 128 0 0 chr11 84683781 84683820 -37160036 + (C)n Simple_repeat Simple_repeat 1 39 0 4 1231 229 246 0 0 chr11 84684283 84684340 -37159516 + G-rich Low_complexity Low_complexity 1 57 0 4 1231 189 0 0 0 chr11 84685239 84685260 -37158596 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1231 180 0 0 0 chr11 84685659 84685679 -37158177 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1231 1411 55 61 0 chr11 84685853 84686034 -37157822 + B2_Mm2 SINE B2 2 193 -2 4 1231 391 278 37 9 chr11 84686038 84686147 -37157709 + PB1D7 SINE Alu 1 112 -8 4 1231 310 240 66 13 chr11 84686453 84686529 -37157327 + ID4 SINE ID 2 81 -2 4 1231 445 195 38 0 chr11 84686566 84686672 -37157184 + PB1D9 SINE Alu 6 120 0 4 1231 21 36 0 0 chr11 84687030 84687058 -37156798 + AT_rich Low_complexity Low_complexity 1 28 0 4 1231 1356 91 16 5 chr11 84687060 84687248 -37156608 + B2_Mm2 SINE B2 2 191 -4 4 1231 236 300 129 0 chr11 84687258 84687328 -37156528 + ID4_ SINE ID 2 80 -3 4 1231 441 260 31 0 chr11 84687534 84687630 -37156226 - ID_B1 SINE B4 -32 192 94 4 1231 506 241 92 25 chr11 84687674 84687793 -37156063 + B1_Mur1 SINE Alu 3 129 -20 4 1231 224 149 84 56 chr11 84688211 84688282 -37155574 + L2a LINE L2 3247 3319 -107 4 1231 321 140 83 9 chr11 84688298 84688377 -37155479 - PB1D10 SINE Alu 0 149 64 4 1231 364 329 42 0 chr11 84688423 84688566 -37155290 + B1F1 SINE Alu 1 149 0 4 1231 22 0 0 0 chr11 84688634 84688656 -37155200 + AT_rich Low_complexity Low_complexity 1 22 0 4 1231 494 340 97 5 chr11 84688811 84688997 -37154859 + B3 SINE B2 1 203 -13 4 1231 291 203 0 0 chr11 84688997 84689061 -37154795 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1231 1092 37 0 0 chr11 84689126 84689260 -37154596 + B1_Mm SINE Alu 14 147 0 4 1231 348 83 0 0 chr11 84689260 84689308 -37154548 + (A)n Simple_repeat Simple_repeat 1 48 0 4 1231 506 261 96 7 chr11 84689318 84689453 -37154403 + B1_Mur1 SINE Alu 2 148 -1 4 1231 1212 54 0 13 chr11 84689478 84689627 -37154229 + B1_Mus2 SINE Alu 1 147 0 4 1231 189 0 0 0 chr11 84689627 84689648 -37154208 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1231 849 235 22 16 chr11 84689657 84689839 -37154017 + B3 SINE B2 33 215 -1 4 1231 340 228 43 3 chr11 84689986 84690080 -37153776 + B1F SINE Alu 5 101 -48 4 1231 728 201 0 0 chr11 84690160 84690294 -37153562 - B1_Mur2 SINE Alu -15 134 1 4 1231 321 261 33 90 chr11 84690294 84690331 -37153525 - MT2B LTR ERVL -446 155 126 4 1231 370 326 0 66 chr11 84690294 84690311 -37153545 - ID_B1 SINE B4 -15 209 69 4 1231 722 209 0 0 chr11 84692129 84692258 -37151598 + B3 SINE B2 2 130 -86 5 1231 625 165 158 0 chr11 84692475 84692602 -37151254 - B1_Mus1 SINE Alu -1 147 1 5 1231 525 176 119 67 chr11 84692604 84692738 -37151118 - B1_Mur2 SINE Alu 0 149 9 5 1231 727 161 62 0 chr11 84692735 84692865 -37150991 + B2_Mm2 SINE B2 32 169 -26 5 1231 526 262 2 13 chr11 84695286 84695408 -37148448 - PB1D10 SINE Alu -21 129 10 5 1231 376 291 70 118 chr11 84696478 84696529 -37147327 + B4 SINE B4 34 211 -81 5 1231 848 136 0 29 chr11 84696529 84696665 -37147191 + B1_Mus1 SINE Alu 2 133 -15 5 1231 398 254 53 0 chr11 84696713 84696827 -37147029 + PB1D9 SINE Alu 1 120 0 5 1231 190 200 67 0 chr11 84697441 84697486 -37146370 - MIR SINE MIR -76 132 85 5 1231 957 94 7 21 chr11 84697591 84697732 -37146124 - B1_Mus1 SINE Alu 0 148 10 5 1231 452 289 37 112 chr11 84697597 84697784 -37146072 - B4 SINE B4 -69 223 51 5 1231 1158 64 0 0 chr11 84697806 84697946 -37145910 + B1_Mus2 SINE Alu 1 140 -7 5 1231 225 246 0 34 chr11 84698011 84698070 -37145786 + CT-rich Low_complexity Low_complexity 1 57 0 5 1231 236 318 80 26 chr11 84698518 84698631 -37145225 - MIR SINE MIR -73 135 17 5 1231 1660 194 128 11 chr11 84700243 84700618 -37143238 + MTC LTR MaLR 3 421 0 5 1231 306 303 148 27 chr11 84700681 84700864 -37142992 + ID_B1 SINE B4 6 210 -14 5 1231 1373 79 26 5 chr11 84700917 84701107 -37142749 + B2_Mm2 SINE B2 1 194 -1 5 1231 801 236 52 0 chr11 84701122 84701296 -37142560 + B3 SINE B2 27 209 -7 5 1231 1222 48 7 0 chr11 84701905 84702051 -37141805 + B1_Mus2 SINE Alu 1 147 0 5 1231 221 284 146 12 chr11 84702230 84702312 -37141544 + B1F1 SINE Alu 6 98 -51 5 1231 706 230 67 0 chr11 84702324 84702489 -37141367 + B3 SINE B2 37 212 -4 5 1231 1506 37 37 16 chr11 84702517 84702708 -37141148 + B2_Mm2 SINE B2 1 195 0 5 1231 537 264 52 0 chr11 84703099 84703254 -37140602 - RSINE1 SINE B4 0 165 3 5 1231 270 282 0 60 chr11 84703266 84703349 -37140507 - ID4_ SINE ID -4 79 2 5 1231 287 212 15 15 chr11 84703357 84703424 -37140432 - B1F SINE Alu 0 149 83 5 1231 262 213 37 74 chr11 84703424 84703438 -37140418 - ID_B1 SINE B4 0 224 147 5 1231 344 256 13 13 chr11 84703649 84703728 -37140128 + ID4_ SINE ID 2 80 -3 5 1231 226 316 13 0 chr11 84703829 84703908 -37139948 - ID4 SINE ID 0 83 4 5 1231 1054 16 0 0 chr11 84704013 84704139 -37139717 - B1_Mus2 SINE Alu -21 126 1 5 1231 429 250 44 0 chr11 84704151 84704294 -37139562 + L1M5 LINE L1 3473 3626 -2520 5 1231 238 200 72 58 chr11 84704313 84704333 -37139523 + PB1D10 SINE Alu 48 117 0 5 1231 240 184 41 0 chr11 84704333 84704382 -37139474 + ID_B1 SINE B4 174 224 0 5 1231 648 210 58 0 chr11 84704636 84704774 -37139082 - B1F2 SINE Alu -2 147 2 5 1231 748 158 16 0 chr11 84704874 84705001 -37138855 + B1_Mur4 SINE Alu 3 131 -19 5 1231 492 235 0 20 chr11 84705056 84705156 -37138700 + B1F2 SINE Alu 51 148 -1 5 1231 203 162 0 0 chr11 84706041 84706078 -37137778 + T-rich Low_complexity Low_complexity 2 38 0 5 1231 455 208 133 0 chr11 84706143 84706263 -37137593 - B1_Mur2 SINE Alu -13 136 1 5 1231 998 198 22 72 chr11 84706346 84706569 -37137287 + B3 SINE B2 1 212 -4 5 1231 234 321 0 0 chr11 84706597 84706653 -37137203 + (CCCTAG)n Simple_repeat Simple_repeat 2 57 0 5 1231 530 299 0 2 chr11 84706914 84707423 -37136433 + (CAG)n Simple_repeat Simple_repeat 1 507 0 5 1231 234 217 123 16 chr11 84707420 84707542 -37136314 + (CAGAGA)n Simple_repeat Simple_repeat 1 135 0 5 1231 298 191 0 0 chr11 84707835 84707882 -37135974 - ID_B1 SINE B4 -4 220 174 5 1231 292 211 53 0 chr11 84707837 84707894 -37135962 - PB1D10 SINE Alu -6 111 52 5 1231 270 356 104 23 chr11 84709353 84709574 -37134282 - MIRc SINE MIR -6 262 24 5 1231 216 232 101 0 chr11 84710940 84711009 -37132847 + MIRc SINE MIR 53 128 -140 5 1231 308 182 36 0 chr11 84711919 84711974 -37131882 - B1F1 SINE Alu -4 145 89 5 1231 231 269 126 21 chr11 84712259 84712354 -37131502 + PB1D10 SINE Alu 6 110 -7 5 1231 189 107 0 0 chr11 84713060 84713088 -37130768 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 5 1231 254 363 80 0 chr11 84715039 84715152 -37128704 - L2b LINE L2 -13 3362 3241 5 1231 704 53 248 34 chr11 84715827 84715944 -37127912 + B1_Mus1 SINE Alu 2 143 -5 5 1231 457 229 117 17 chr11 84716909 84717029 -37126827 + B1F1 SINE Alu 1 132 -17 5 1231 652 228 73 130 chr11 84717074 84717239 -37126617 + B3A SINE B2 1 162 -36 5 1231 447 19 0 0 chr11 84717239 84717291 -37126565 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1231 343 228 73 130 chr11 84717291 84717317 -37126539 + B2_Mm2 SINE B2 149 180 -15 5 1231 1003 190 20 20 chr11 84717330 84717534 -37126322 + B3 SINE B2 1 204 -12 5 1231 38 22 0 0 chr11 84717552 84717597 -37126259 + AT_rich Low_complexity Low_complexity 1 45 0 5 1231 718 215 110 26 chr11 84717597 84717788 -37126068 + B4A SINE B4 1 207 -85 5 1231 501 17 0 0 chr11 84717790 84717848 -37126008 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 5 1231 288 0 0 0 chr11 84717848 84717880 -37125976 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 5 1231 299 113 19 0 chr11 84717927 84717980 -37125876 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1231 513 233 66 49 chr11 84718742 84718864 -37124992 - RSINE1 SINE B4 -38 127 4 5 1231 820 155 0 0 chr11 84719515 84719644 -37124212 + B1_Mur4 SINE Alu 1 129 -21 5 1231 320 264 85 0 chr11 84721181 84721287 -37122569 + PB1D10 SINE Alu 2 116 -1 5 1231 779 226 69 0 chr11 84721458 84721617 -37122239 - B3A SINE B2 -22 176 7 5 1231 578 259 48 0 chr11 84722117 84722264 -37121592 + RSINE1 SINE B4 12 165 0 5 1231 572 117 117 0 chr11 84722297 84722400 -37121456 - B1_Mm SINE Alu 0 147 33 5 1231 1171 75 0 0 chr11 84722420 84722567 -37121289 - B1_Mus2 SINE Alu 0 147 1 5 1231 660 233 175 16 chr11 84724640 84724823 -37119033 - B3 SINE B2 0 216 5 5 1231 1217 54 0 13 chr11 84725268 84725417 -37118439 + B1_Mus2 SINE Alu 1 147 0 5 1231 262 191 0 0 chr11 84725463 84725505 -37118351 + B1_Mus1 SINE Alu 14 55 -93 5 1231 298 143 222 0 chr11 84725622 84725685 -37118171 + B3A SINE B2 2 78 -120 5 1231 280 307 130 30 chr11 84725685 84725753 -37118103 + B4 SINE B4 2 145 -147 5 1231 1274 41 0 0 chr11 84725908 84726055 -37117801 + B1_Mus2 SINE Alu 1 147 0 5 1231 383 200 63 53 chr11 84726098 84726186 -37117670 + B1F1 SINE Alu 48 138 -11 5 1231 207 0 0 0 chr11 84726186 84726209 -37117647 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5 1231 676 123 197 0 chr11 84727553 84727675 -37116181 + B1_Mus1 SINE Alu 2 147 -1 5 1231 565 273 16 98 chr11 84728324 84728507 -37115349 - B3 SINE B2 -48 168 1 5 1231 273 261 89 22 chr11 84728534 84728624 -37115232 + PB1D10 SINE Alu 1 96 -21 5 1231 357 253 44 13 chr11 84728644 84728738 -37115118 + B1F SINE Alu 1 101 -48 5 1231 1217 48 0 20 chr11 84728738 84728888 -37114968 + B1_Mus2 SINE Alu 1 147 0 5 1231 321 269 49 130 chr11 84728888 84728955 -37114901 + B1_Mur2 SINE Alu 102 149 0 5 1231 549 143 110 37 chr11 84728955 84729064 -37114792 + B1_Mur3 SINE Alu 32 148 -1 5 1231 1233 48 0 0 chr11 84729096 84729243 -37114613 + B1_Mus2 SINE Alu 1 147 0 5 1231 380 222 11 11 chr11 84729455 84729546 -37114310 - PB1D7 SINE Alu 0 120 30 5 1231 292 296 33 22 chr11 84730016 84730106 -37113750 - PB1D10 SINE Alu -21 96 6 5 1231 504 312 62 50 chr11 84730138 84730317 -37113539 - B3A SINE B2 -16 182 2 5 1231 207 259 126 0 chr11 84730343 84730450 -37113406 - L2c LINE L2 -13 3413 3268 5 1231 272 146 0 0 chr11 84730683 84730724 -37113132 - RLTR14 LTR ERV1 -341 41 1 5 1231 682 125 10 51 chr11 84730920 84731071 -37112785 - B1_Mur4 SINE Alu 0 150 16 5 1231 1130 116 136 0 chr11 84732483 84732681 -37111175 + URR1B DNA MER1_type 1 225 0 5 1231 439 283 33 0 chr11 84732738 84732788 -37111068 + ID SINE ID 31 84 -140 5 1231 318 210 54 107 chr11 84732788 84732900 -37110956 + PB1D10 SINE Alu 1 106 -11 5 1231 455 164 123 62 chr11 84732973 84733108 -37110748 + B2_Mm2 SINE B2 10 191 -7 5 1231 283 214 287 30 chr11 84733283 84733384 -37110472 + RSINE1 SINE B4 11 137 -28 5 1231 409 279 0 0 chr11 84733425 84733515 -37110341 - ID_B1 SINE B4 -59 165 80 5 1231 270 0 0 0 chr11 84734381 84734411 -37109445 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1231 229 201 77 152 chr11 84734470 84734559 -37109297 - PB1D9 SINE Alu -65 84 1 5 1231 562 224 77 88 chr11 84734770 84734810 -37109046 + B4 SINE B4 42 79 -213 5 1231 1193 54 0 0 chr11 84734810 84734957 -37108899 + B1_Mus1 SINE Alu 2 148 0 5 1231 541 204 0 15 chr11 84734957 84735091 -37108765 + A-rich Low_complexity Low_complexity 2 133 0 5 1231 1270 199 0 27 chr11 84735106 84735328 -37108528 + B3 SINE B2 1 216 0 5 1231 301 243 27 0 chr11 84735556 84735630 -37108226 - B4A SINE B4 -127 165 90 5 1231 872 154 15 0 chr11 84736704 84736840 -37107016 + B1_Mur3 SINE Alu 2 139 -10 6 1231 1080 196 9 27 chr11 84737273 84737493 -37106363 + B3 SINE B2 1 216 0 6 1231 404 234 223 0 chr11 84737528 84737622 -37106234 + PB1D7 SINE Alu 1 115 -5 6 1231 604 269 8 0 chr11 84737631 84737765 -37106091 + RSINE1 SINE B4 9 143 -22 6 1231 201 39 0 0 chr11 84737777 84737803 -37106053 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1231 708 184 0 0 chr11 84737814 84738017 -37105839 + (CA)n Simple_repeat Simple_repeat 1 203 0 6 1231 279 0 0 0 chr11 84738017 84738048 -37105808 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1231 708 175 0 0 chr11 84738048 84738071 -37105785 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1231 447 201 0 0 chr11 84738086 84738230 -37105626 + (CA)n Simple_repeat Simple_repeat 2 145 0 6 1231 3290 36 0 8 chr11 84738644 84739038 -37104818 - L1Md_F2 LINE L1 -2 6580 6190 6 1231 204 182 0 0 chr11 84739047 84739091 -37104765 + T-rich Low_complexity Low_complexity 1 44 0 6 1231 5624 57 45 8 chr11 84739104 84739873 -37103983 - L1_Mus3 LINE L1 0 6638 5851 6 1231 696 204 58 0 chr11 84739873 84740010 -37103846 - B1_Mur2 SINE Alu -2 147 3 6 1231 687 264 77 210 chr11 84740090 84740249 -37103607 - RMER5 LTR ERV1 -12 522 379 6 1231 1198 61 0 7 chr11 84740249 84740397 -37103459 + B1_Mus1 SINE Alu 2 148 0 6 1231 687 264 77 210 chr11 84740397 84740755 -37103101 - RMER5 LTR ERV1 -156 378 74 6 1231 1307 72 77 6 chr11 84740914 84741096 -37102760 + B2_Mm2 SINE B2 1 195 0 6 1231 782 130 8 0 chr11 84741096 84741227 -37102629 + (GGAA)n Simple_repeat Simple_repeat 2 133 0 6 1231 1005 81 176 0 chr11 84741228 84741376 -37102480 + B2_Mm2 SINE B2 2 175 -20 6 1231 824 69 0 8 chr11 84741379 84741496 -37102360 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 6 1231 311 255 138 64 chr11 84741514 84741623 -37102233 + PB1D9 SINE Alu 1 117 -3 6 1231 262 303 13 0 chr11 84742015 84742091 -37101765 - PB1D7 SINE Alu -32 88 12 6 1231 501 158 0 0 chr11 84742301 84742377 -37101479 + tRNA-Lys-AAG tRNA tRNA 1 76 0 6 1231 2372 141 44 68 chr11 84742377 84742833 -37101023 - RLTR11B LTR ERVK -8 445 1 6 1231 288 0 0 0 chr11 84742867 84742899 -37100957 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1231 422 257 63 18 chr11 84743914 84744025 -37099831 - B3 SINE B2 -100 116 1 6 1231 780 159 60 8 chr11 84744343 84744476 -37099380 - B1_Mur3 SINE Alu -6 143 4 6 1231 798 44 52 0 chr11 84744959 84745094 -37098762 + (TCTA)n Simple_repeat Simple_repeat 1 142 0 6 1231 513 68 0 0 chr11 84745122 84745196 -37098660 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 6 1231 1178 57 0 0 chr11 84745196 84745330 -37098526 - B1_Mm SINE Alu -8 139 6 6 1231 976 126 0 14 chr11 84745343 84745488 -37098368 - B1_Mur4 SINE Alu -7 143 1 6 1231 232 200 29 0 chr11 84745533 84745581 -37098275 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 6 1231 1262 34 0 14 chr11 84745581 84745729 -37098127 + B1_Mus2 SINE Alu 2 147 0 6 1231 232 200 29 0 chr11 84745729 84745750 -37098106 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 6 1231 402 306 111 30 chr11 84745785 84745984 -37097872 - LTR65 LTR ERV1 -275 394 180 6 1231 639 0 0 0 chr11 84746599 84746670 -37097186 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 6 1231 1226 72 6 6 chr11 84746978 84747145 -37096711 + URR1B DNA MER1_type 59 225 0 6 1231 235 283 58 115 chr11 84747446 84747550 -37096306 + MER90 LTR ERV1 2 99 -476 6 1231 265 36 0 0 chr11 84747647 84747684 -37096172 - L1MB7 LINE L1 -1 6177 6141 6 1231 738 237 0 0 chr11 84747726 84747861 -37095995 - ID_B1 SINE B4 -2 222 88 6 1231 573 190 42 17 chr11 84747990 84748108 -37095748 - B1_Mur1 SINE Alu 0 149 29 6 1231 456 19 0 0 chr11 84748108 84748161 -37095695 + (TTTAG)n Simple_repeat Simple_repeat 3 55 0 6 1231 754 182 14 49 chr11 84748161 84748305 -37095551 - B1_Mus2 SINE Alu -11 139 1 6 1231 611 255 87 20 chr11 84748305 84748498 -37095358 - MTD LTR MaLR -210 209 4 6 1231 759 303 63 47 chr11 84748574 84748875 -37094981 - RMER5 LTR ERV1 -217 317 12 6 1231 561 254 35 21 chr11 84748938 84749083 -37094773 - B1_Mur1 SINE Alu -2 147 1 6 1231 431 218 14 101 chr11 84749215 84749363 -37094493 - L1MB8 LINE L1 -194 5984 5850 6 1231 441 292 97 0 chr11 84749455 84749568 -37094288 - B3A SINE B2 -45 153 30 6 1231 909 134 0 22 chr11 84749581 84749718 -37094138 - B1_Mur4 SINE Alu -10 140 7 6 1231 2046 104 24 119 chr11 84749718 84750089 -37093767 + ORR1A1 LTR MaLR 1 336 -10 6 1231 416 233 39 0 chr11 84750193 84750287 -37093569 - PB1D10 SINE Alu -5 115 16 6 1231 350 300 30 10 chr11 84750332 84750433 -37093423 - B1F SINE Alu -23 126 24 6 1231 428 275 0 0 chr11 84750347 84750435 -37093421 - ID_B1 SINE B4 -34 190 103 6 1231 1560 245 80 41 chr11 84750435 84750949 -37092907 - RMER5 LTR ERV1 0 534 1 6 1231 404 236 137 132 chr11 84751523 84751563 -37092293 + B3A SINE B2 2 32 -166 6 1231 487 239 27 9 chr11 84751563 84751673 -37092183 + PB1D9 SINE Alu 3 114 -6 6 1231 404 236 137 132 chr11 84751673 84751822 -37092034 + B3A SINE B2 33 192 -6 6 1231 912 150 7 39 chr11 84751844 84751997 -37091859 - B1_Mus1 SINE Alu 0 148 1 6 1231 581 240 30 23 chr11 84752017 84752149 -37091707 + ID_B1 SINE B4 84 216 -8 6 1231 490 267 122 18 chr11 84752160 84752193 -37091663 - B3 SINE B2 -9 207 169 6 1231 276 30 0 0 chr11 84752193 84752226 -37091630 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1231 490 267 122 18 chr11 84752226 84752356 -37091500 - B3 SINE B2 -48 168 27 6 1231 198 0 0 0 chr11 84752356 84752378 -37091478 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1231 473 84 0 14 chr11 84752407 84752479 -37091377 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 6 1231 1188 68 0 7 chr11 84752479 84752628 -37091228 - B1_Mus1 SINE Alu 0 148 1 6 1231 472 114 29 0 chr11 84752634 84752704 -37091152 + B1_Mur4 SINE Alu 69 140 -10 6 1231 242 51 51 0 chr11 84752731 84752770 -37091086 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1231 240 256 139 13 chr11 84752977 84753056 -37090800 + PB1D10 SINE Alu 25 113 -4 6 1231 570 234 238 6 chr11 84754304 84754472 -37089384 + ID_B1 SINE B4 1 207 -17 6 1231 691 143 38 0 chr11 84754485 84754590 -37089266 + B1_Mur4 SINE Alu 1 109 -41 6 1231 2030 211 28 73 chr11 84754591 84754651 -37089205 + RLTR11A LTR ERVK 6 50 -477 6 1231 1148 82 0 7 chr11 84754651 84754799 -37089057 + B1_Mm SINE Alu 1 147 0 6 1231 1182 111 47 0 chr11 84754799 84754971 -37088885 - B2_Mm2 SINE B2 -14 181 2 6 1231 2103 183 20 27 chr11 84754971 84755448 -37088408 + RLTR11A LTR ERVK 51 522 -6 6 1231 1257 41 0 0 chr11 84755448 84755594 -37088262 + B1_Mm SINE Alu 2 147 0 6 1231 1706 26 0 0 chr11 84755630 84755823 -37088033 - B2_Mm1a SINE B2 0 193 1 6 1231 284 100 0 0 chr11 84756053 84756093 -37087763 + B1_Mus1 SINE Alu 1 40 -108 6 1231 1184 61 0 7 chr11 84756111 84756259 -37087597 + B1_Mus1 SINE Alu 1 147 -1 6 1231 1954 151 29 34 chr11 84757982 84758394 -37085462 - RMER17C LTR ERVK 0 410 1 6 1231 207 282 12 37 chr11 84758394 84758466 -37085390 + CT-rich Low_complexity Low_complexity 4 73 0 6 1231 607 261 7 14 chr11 84758477 84758617 -37085239 - B1F SINE Alu -10 139 1 6 1231 267 312 118 16 chr11 84759259 84759386 -37084470 - MER45A DNA Tip100 -36 142 3 6 1231 195 42 0 0 chr11 84759823 84759847 -37084009 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1231 750 217 58 26 chr11 84759857 84760013 -37083843 - B3A SINE B2 -37 161 1 6 1231 231 169 46 92 chr11 84760249 84760314 -37083542 + ID2 SINE ID 2 63 -20 6 1231 231 214 0 0 chr11 84760325 84760367 -37083489 + GA-rich Low_complexity Low_complexity 4 45 0 6 1231 651 147 132 21 chr11 84761166 84761306 -37082550 - B1_Mur2 SINE Alu 0 150 1 6 1231 218 324 83 76 chr11 84761167 84761310 -37082546 - B4A SINE B4 -66 226 82 6 1231 578 276 86 86 chr11 84761310 84761532 -37082324 - ID_B1 SINE B4 -1 223 2 6 1231 218 324 83 76 chr11 84761532 84761545 -37082311 - B4A SINE B4 -211 81 69 6 1231 785 111 130 38 chr11 84761545 84761676 -37082180 - B1_Mus2 SINE Alu -3 144 2 6 1231 198 0 0 0 chr11 84762378 84762400 -37081456 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1231 310 347 64 12 chr11 84762496 84762668 -37081188 + MIR3 SINE MIR 2 182 -26 6 1231 223 188 0 40 chr11 84762774 84762824 -37081032 - PB1D7 SINE Alu -67 53 6 6 1231 217 304 90 67 chr11 84762848 84762982 -37080874 + L2c LINE L2 3107 3243 -144 6 1231 368 257 263 85 chr11 84762984 84763231 -37080625 + B4A SINE B4 2 292 0 6 1231 555 237 17 0 chr11 84763255 84763432 -37080424 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1231 943 186 16 31 chr11 84763500 84763694 -37080162 - RMER5 LTR ERV1 0 534 344 6 1231 609 161 90 2 chr11 84763717 84763840 -37080016 - B1_Mur4 SINE Alu 0 150 18 6 1231 245 245 0 0 chr11 84763840 84763893 -37079963 + PB1D9 SINE Alu 1 53 -67 6 1231 1244 251 65 14 chr11 84764258 84764609 -37079247 - RMER5 LTR ERV1 0 534 166 6 1231 627 295 44 24 chr11 84765009 84765214 -37078642 - B4A SINE B4 -83 209 1 6 1231 246 171 0 0 chr11 84765453 84765523 -37078333 + T-rich Low_complexity Low_complexity 1 70 0 6 1231 1584 43 0 11 chr11 84765602 84765790 -37078066 + B2_Mm1a SINE B2 2 187 -6 6 1231 442 336 15 0 chr11 84766272 84766403 -37077453 + B4A SINE B4 8 140 -152 6 1231 397 227 132 33 chr11 84766467 84766548 -37077308 + RSINE1 SINE B4 57 147 -18 6 1231 591 74 0 0 chr11 84766548 84766629 -37077227 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1231 824 236 16 6 chr11 84766742 84766925 -37076931 - B3 SINE B2 0 216 32 7 1231 653 203 93 14 chr11 84767137 84767265 -37076591 + RSINE1 SINE B4 3 143 -22 7 1231 252 0 0 0 chr11 84767265 84767293 -37076563 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1231 450 0 0 0 chr11 84767293 84767342 -37076514 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1231 287 260 137 0 chr11 84767352 84767415 -37076441 - RSINE1 SINE B4 -35 130 58 7 1231 217 174 22 0 chr11 84767562 84767608 -37076248 + A-rich Low_complexity Low_complexity 2 48 0 7 1231 195 42 0 0 chr11 84767966 84767990 -37075866 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 7 1231 282 29 0 0 chr11 84768159 84768194 -37075662 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1231 397 203 0 51 chr11 84768195 84768273 -37075583 - RSINE1 SINE B4 -41 124 51 7 1231 1208 55 0 14 chr11 84768296 84768444 -37075412 - B1_Mus2 SINE Alu 0 147 2 7 1231 292 237 66 29 chr11 84768989 84769114 -37074742 - MIRc SINE MIR -94 182 47 7 1231 1284 41 0 0 chr11 84769139 84769286 -37074570 + B1_Mus2 SINE Alu 1 147 0 7 1231 207 0 0 0 chr11 84769286 84769309 -37074547 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1231 278 83 0 0 chr11 84770627 84770663 -37073193 + ID4_ SINE ID 9 44 -39 7 1231 306 0 0 0 chr11 84772365 84772399 -37071457 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1231 198 0 0 0 chr11 84773789 84773811 -37070045 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 7 1231 401 219 27 0 chr11 84774259 84774346 -37069510 + BC1_Mm scRNA scRNA 2 90 -62 7 1231 224 261 46 0 chr11 84774605 84774670 -37069186 - MIRb SINE MIR -71 197 130 7 1231 1384 96 16 0 chr11 84774779 84774967 -37068889 + B2_Mm2 SINE B2 1 191 -4 7 1231 373 101 25 25 chr11 84775018 84775099 -37068757 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 7 1231 437 118 195 40 chr11 84775617 84775726 -37068130 - B1_Mus1 SINE Alu 0 148 31 7 1231 290 236 67 40 chr11 84776148 84776223 -37067633 - ID4_ SINE ID -1 82 6 7 1231 217 312 165 6 chr11 84778755 84778913 -37064943 + MER5A DNA MER1_type 1 183 -6 7 1231 218 154 58 0 chr11 84779412 84779464 -37064392 + ID_B1 SINE B4 82 136 -88 7 1231 218 175 26 171 chr11 84779464 84779488 -37064368 + B1_Mur3 SINE Alu 1 65 -84 7 1231 225 0 0 0 chr11 84780413 84780438 -37063418 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1231 261 0 0 0 chr11 84781570 84781599 -37062257 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1231 183 77 0 0 chr11 84781706 84781732 -37062124 - L2c LINE L2 -17 3370 3345 7 1231 258 254 45 41 chr11 84782933 84783067 -37060789 + MIRb SINE MIR 28 164 -112 7 1231 248 276 0 13 chr11 84783090 84783167 -37060689 + B4 SINE B4 59 134 -158 7 1231 455 279 41 0 chr11 84783249 84783371 -37060485 + B4A SINE B4 88 214 -78 7 1231 740 159 0 23 chr11 84783376 84783505 -37060351 - B1_Mus2 SINE Alu -21 126 1 7 1231 359 212 0 59 chr11 84783505 84783578 -37060278 + B4A SINE B4 202 269 -23 7 1231 396 0 0 0 chr11 84783578 84783622 -37060234 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1231 207 0 0 0 chr11 84783953 84783976 -37059880 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1231 662 138 37 0 chr11 84783980 84784089 -37059767 - B1_Mus2 SINE Alu -8 139 27 7 1231 480 256 39 13 chr11 84784672 84784826 -37059030 + MER53 DNA hAT 26 183 -10 7 1231 617 210 66 77 chr11 84784838 84785034 -37058822 - B3A SINE B2 0 198 5 7 1231 201 146 0 0 chr11 84785098 84785146 -37058710 + (T)n Simple_repeat Simple_repeat 1 48 0 7 1231 1153 81 0 13 chr11 84785147 84785297 -37058559 - B1_Mus1 SINE Alu 0 148 1 7 1231 400 363 64 0 chr11 84786341 84786498 -37057358 + LTR16A LTR ERVL 226 392 -59 7 1231 1201 62 89 22 chr11 84786687 84786867 -37056989 - B2_Mm2 SINE B2 -2 193 2 7 1231 1077 44 81 0 chr11 84786900 84787036 -37056820 - B1_Mm SINE Alu 0 147 1 7 1231 456 226 27 10 chr11 84788594 84788718 -37055138 + B4 SINE B4 16 138 -86 7 1231 799 263 31 5 chr11 84788875 84789070 -37054786 + B4 SINE B4 1 200 -92 7 1231 258 339 24 40 chr11 84788960 84789086 -37054770 + B1_Mur4 SINE Alu 7 130 -20 7 1231 886 86 187 53 chr11 84789180 84789215 -37054641 + B2_Mm2 SINE B2 2 35 -160 7 1231 1565 43 21 0 chr11 84789215 84789402 -37054454 + B2_Mm1t SINE B2 2 192 -1 7 1231 886 86 187 53 chr11 84789402 84789537 -37054319 + B2_Mm2 SINE B2 36 195 0 7 1231 244 212 0 66 chr11 84789689 84789780 -37054076 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 7 1231 689 204 290 0 chr11 84790075 84790237 -37053619 + B3 SINE B2 1 209 -7 7 1231 1457 55 27 11 chr11 84790603 84790786 -37053070 + B2_Mm1a SINE B2 2 187 -6 7 1231 33 0 0 0 chr11 84790841 84790874 -37052982 + AT_rich Low_complexity Low_complexity 1 33 0 7 1231 557 227 109 0 chr11 84790914 84791033 -37052823 + B1_Mur3 SINE Alu 2 133 -16 7 1231 493 241 0 41 chr11 84791517 84791638 -37052218 - PB1D9 SINE Alu -2 118 3 7 1231 584 232 39 99 chr11 84791722 84791904 -37051952 + B3 SINE B2 29 199 -17 7 1231 4809 95 52 39 chr11 84791842 84792290 -37051566 - RMER12 LTR ERVK -486 836 380 7 1231 1207 35 14 0 chr11 84792290 84792435 -37051421 - B1_Mus2 SINE Alu 0 147 1 7 1231 4809 95 52 39 chr11 84792435 84792811 -37051045 - RMER12 LTR ERVK -943 379 1 7 1231 187 291 75 12 chr11 84793313 84793393 -37050463 + MIRb SINE MIR 95 179 -89 7 1231 891 239 51 5 chr11 84793459 84793673 -37050183 + ID_B1 SINE B4 1 224 0 7 1231 940 234 181 38 chr11 84793740 84793913 -37049943 - MTD LTR MaLR -2 417 204 7 1231 1186 48 0 52 chr11 84793913 84794068 -37049788 - B1_Mus1 SINE Alu 0 148 2 7 1231 940 234 181 38 chr11 84794068 84794259 -37049597 - MTD LTR MaLR -216 203 1 7 1231 273 239 0 40 chr11 84795142 84795216 -37048640 - B1F SINE Alu -8 141 71 7 1231 1342 73 45 0 chr11 84795248 84795425 -37048431 - B2_Mm2 SINE B2 -9 186 2 7 1231 1231 42 0 0 chr11 84795489 84795632 -37048224 - B1_Mus1 SINE Alu -5 143 1 7 1231 411 299 62 16 chr11 84796048 84796177 -37047679 + RSINE1 SINE B4 2 136 -29 7 1231 608 199 17 96 chr11 84796903 84797081 -37046775 + B3A SINE B2 34 197 -1 7 1231 483 256 89 17 chr11 84797088 84797267 -37046589 + B3A SINE B2 1 192 -6 7 1231 783 196 14 14 chr11 84797284 84797424 -37046432 - B1_Mur3 SINE Alu -8 141 2 7 1231 1246 35 0 0 chr11 84797563 84797708 -37046148 - B1_Mm SINE Alu -1 146 2 7 1231 212 330 8 104 chr11 84801027 84801093 -37042763 - PB1D10 SINE Alu -2 115 53 7 1231 1588 42 11 0 chr11 84801093 84801283 -37042573 - B2_Mm1a SINE B2 0 193 2 7 1231 212 330 8 104 chr11 84801283 84801341 -37042515 - PB1D10 SINE Alu -65 52 3 7 1231 369 0 0 0 chr11 84801479 84801520 -37042336 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 7 1231 1093 84 19 0 chr11 84801520 84801674 -37042182 - B2_Mm2 SINE B2 -38 157 1 7 1231 526 211 53 0 chr11 84801681 84801795 -37042061 - PB1D9 SINE Alu 0 120 1 7 1231 299 192 90 0 chr11 84802404 84802482 -37041374 + MT2B LTR ERVL 1 85 -448 7 1231 739 152 8 0 chr11 84802516 84802641 -37041215 - B1_Mus2 SINE Alu -11 136 11 7 1231 575 244 0 0 chr11 84802775 84802894 -37040962 - B1_Mus1 SINE Alu -24 124 6 7 1231 942 243 21 63 chr11 84802912 84803198 -37040658 + MT2B LTR ERVL 263 536 -65 7 1231 590 262 14 7 chr11 84803344 84803486 -37040370 + B1_Mm SINE Alu 5 147 0 7 153 267 258 56 0 chr11 84803568 84803657 -37040199 + MT2B2 LTR ERVL 152 245 -339 7 1232 346 283 125 8 chr11 84803585 84803713 -37040143 + B1F1 SINE Alu 6 148 -1 7 1232 321 279 0 0 chr11 84803723 84803791 -37040065 + ID4_ SINE ID 5 72 -11 7 1232 1001 115 14 0 chr11 84803922 84804070 -37039786 + B1_Mur4 SINE Alu 1 150 0 7 1232 1117 95 0 0 chr11 84804265 84804412 -37039444 + B1_Mus2 SINE Alu 1 147 0 7 1232 778 182 36 0 chr11 84804432 84804569 -37039287 + B1_Mur4 SINE Alu 2 143 -7 7 1232 254 227 26 26 chr11 84804671 84804748 -37039108 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 7 1232 276 53 0 0 chr11 84804753 84804791 -37039065 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 7 1232 892 72 80 0 chr11 84804791 84804916 -37038940 - B1_Mm SINE Alu -12 135 1 7 1232 1331 96 32 0 chr11 84804978 84805166 -37038690 + B2_Mm2 SINE B2 2 195 0 7 1232 1435 79 16 0 chr11 84805184 84805374 -37038482 + B2_Mm2 SINE B2 3 195 0 7 1232 441 269 7 15 chr11 84805448 84805576 -37038280 + MER2 DNA MER2_type 171 297 -48 7 1232 672 252 59 68 chr11 84805576 84805844 -37038012 + MTEa LTR MaLR 1 267 -112 7 1232 23 33 0 0 chr11 84806315 84806345 -37037511 + AT_rich Low_complexity Low_complexity 1 30 0 7 1232 619 248 19 45 chr11 84806637 84806793 -37037063 + B3 SINE B2 65 216 0 7 1232 408 296 34 40 chr11 84806801 84806822 -37037034 + ID_B1 SINE B4 65 211 -13 7 1232 708 160 24 16 chr11 84806822 84806949 -37036907 + B1_Mur1 SINE Alu 9 136 -13 7 1232 2601 163 151 3 chr11 84807001 84807598 -37036258 + RMER6A LTR ERVK 54 738 -18 7 1232 637 246 22 0 chr11 84807627 84807765 -37036091 - B1F1 SINE Alu -6 143 3 7 1232 244 0 56 0 chr11 84808227 84808263 -37035593 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1232 452 139 114 0 chr11 84808307 84808386 -37035470 - ID_B1 SINE B4 -1 223 136 7 1232 1104 115 5 70 chr11 84808466 84808653 -37035203 + B2_Mm1t SINE B2 5 179 -14 7 1232 348 91 0 18 chr11 84808700 84808756 -37035100 + B2_Mm2 SINE B2 47 101 -94 7 1232 339 25 0 0 chr11 84808796 84808836 -37035020 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1232 621 289 0 7 chr11 84808837 84808980 -37034876 + B3 SINE B2 27 168 -48 8 1232 400 115 204 11 chr11 84809173 84809261 -37034595 - B3 SINE B2 -71 124 20 8 1232 638 206 0 34 chr11 84809300 84809446 -37034410 + RMER15 LTR ERVL 419 559 -16 8 1232 322 361 34 0 chr11 84809433 84809552 -37034304 - B4 SINE B4 -169 123 1 8 1232 198 26 0 71 chr11 84809582 84809624 -37034232 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1232 896 188 193 0 chr11 84809831 84810012 -37033844 + B3 SINE B2 1 216 0 8 1232 1163 81 0 0 chr11 84810020 84810181 -37033675 + MT2B2 LTR ERVL 344 504 -80 8 1232 385 113 0 0 chr11 84810181 84810234 -37033622 - MurERV4-int LTR ERVK -959 4301 4249 8 1232 10296 68 110 13 chr11 84810237 84811597 -37032259 + L1VL2 LINE L1 312 1779 -1836 8 1232 1256 108 11 0 chr11 84811597 84811782 -37032074 + B2_Mm1t SINE B2 1 187 -6 8 1232 10296 70 19 24 chr11 84811782 84812376 -37031480 + L1VL2 LINE L1 1780 2393 -1222 8 1232 21 57 0 0 chr11 84812433 84812468 -37031388 + AT_rich Low_complexity Low_complexity 1 35 0 8 1232 1562 39 22 0 chr11 84812823 84813005 -37030851 + B2_Mm1a SINE B2 2 187 -6 8 1232 25 31 0 0 chr11 84813042 84813074 -37030782 + AT_rich Low_complexity Low_complexity 1 32 0 8 1232 235 299 0 15 chr11 84813443 84813511 -37030345 + ID4_ SINE ID 3 69 -14 8 1232 300 273 70 28 chr11 84814211 84814354 -37029502 - B1F SINE Alu 0 149 1 8 1232 439 205 97 29 chr11 84814413 84814518 -37029338 + PB1D7 SINE Alu 11 120 0 8 1232 775 272 29 91 chr11 84814528 84814835 -37029021 + B4 SINE B4 4 291 -1 8 1232 315 0 0 0 chr11 84814985 84815020 -37028836 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1232 644 231 165 13 chr11 84815255 84815413 -37028443 - B3A SINE B2 -16 182 1 8 1232 28 0 0 0 chr11 84815432 84815460 -37028396 + AT_rich Low_complexity Low_complexity 1 28 0 8 1232 458 256 165 0 chr11 84815460 84815581 -37028275 - B1_Mur1 SINE Alu -6 143 3 8 1232 560 243 29 14 chr11 84815634 84815772 -37028084 - RSINE1 SINE B4 -23 142 3 8 1232 805 224 130 20 chr11 84815852 84816052 -37027804 - ID_B1 SINE B4 -1 223 2 8 1232 325 189 0 0 chr11 84816072 84816125 -37027731 + tRNA-SeC(e)-TGA tRNA tRNA 1 53 -36 8 1232 524 139 32 3 chr11 84816125 84816233 -37027623 + B1_Mur4 SINE Alu 2 146 -4 8 1232 225 0 0 0 chr11 84816245 84816270 -37027586 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 8 1232 282 268 171 0 chr11 84816326 84816408 -37027448 + RSINE1 SINE B4 22 117 -48 8 1232 282 87 0 0 chr11 84816409 84816455 -37027401 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1232 837 207 69 29 chr11 84816478 84816682 -37027174 + B3 SINE B2 1 212 -4 8 1232 293 272 0 60 chr11 84816682 84816807 -37027049 + Lx8 LINE L1 7353 7470 -3 8 1232 328 350 26 0 chr11 84816868 84816985 -37026871 - L1M5 LINE L1 -298 5826 5707 8 1232 1083 89 6 0 chr11 84817451 84817609 -37026247 + B2_Mm1a SINE B2 2 160 -33 8 1232 396 0 0 0 chr11 84817609 84817653 -37026203 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 8 1232 567 301 0 0 chr11 84817758 84817901 -37025955 - ID_B1 SINE B4 0 224 82 8 1232 695 201 20 20 chr11 84817936 84818063 -37025793 + B1_Mus1 SINE Alu 2 129 -19 8 1232 396 0 0 0 chr11 84818063 84818107 -37025749 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1232 695 201 20 20 chr11 84818107 84818126 -37025730 + B1_Mus1 SINE Alu 130 148 0 8 1232 228 266 78 0 chr11 84818281 84818345 -37025511 + RSINE1 SINE B4 61 129 -36 8 1232 31 0 0 0 chr11 84818360 84818391 -37025465 + AT_rich Low_complexity Low_complexity 1 31 0 8 1232 573 296 10 31 chr11 84818655 84818847 -37025009 - B3A SINE B2 -7 191 4 8 1232 499 287 55 19 chr11 84818888 84819077 -37024779 - B3A SINE B2 -28 188 1 8 1232 426 330 9 0 chr11 84820659 84820774 -37023082 - ID_B1 SINE B4 -107 117 2 8 1232 576 130 35 9 chr11 84820814 84820930 -37022926 - B1_Mur3 SINE Alu 0 149 31 8 1232 231 333 0 0 chr11 84821104 84821179 -37022677 - ID4_ SINE ID -4 79 5 8 1232 270 324 34 27 chr11 84821190 84821336 -37022520 - B1F SINE Alu -2 147 1 8 1232 296 161 0 97 chr11 84821776 84821838 -37022018 + B1_Mus1 SINE Alu 11 66 -82 8 1232 381 93 0 0 chr11 84822141 84822195 -37021661 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 8 1232 522 191 148 0 chr11 84822224 84822339 -37021517 - B1_Mur1 SINE Alu -5 144 13 8 1232 219 294 59 59 chr11 84822361 84822513 -37021343 + L2 LINE L2 2188 2339 -1080 8 1232 297 0 0 0 chr11 84822758 84822791 -37021065 + (TATG)n Simple_repeat Simple_repeat 4 36 0 8 1232 1146 57 0 0 chr11 84822791 84822932 -37020924 - B1_Mm SINE Alu -6 141 1 8 1232 730 169 8 23 chr11 84823727 84823860 -37019996 - B1_Mur4 SINE Alu -11 139 9 8 1232 183 42 0 0 chr11 84824094 84824118 -37019738 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 1232 990 65 0 0 chr11 84824133 84824271 -37019585 + B1_Mus2 SINE Alu 2 139 -8 8 1232 333 271 147 68 chr11 84824535 84824725 -37019131 - B4A SINE B4 -86 206 2 8 1232 526 246 16 0 chr11 84824731 84824853 -37019003 - ID_B1 SINE B4 -3 221 98 8 1232 22 35 0 0 chr11 84824901 84824930 -37018926 + AT_rich Low_complexity Low_complexity 1 29 0 8 1232 773 248 69 5 chr11 84825153 84825356 -37018500 - B3 SINE B2 0 216 1 8 1232 192 125 0 0 chr11 84825647 84825679 -37018177 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1232 748 282 34 0 chr11 84825805 84825982 -37017874 - B3A SINE B2 -15 183 1 8 1232 633 290 17 24 chr11 84825986 84826186 -37017670 - B3A SINE B2 -8 187 2 8 1232 1161 96 84 0 chr11 84826210 84826377 -37017479 - B2_Mm2 SINE B2 -14 181 1 8 1232 718 278 0 53 chr11 84826503 84826731 -37017125 - B3 SINE B2 0 216 1 8 1232 687 238 62 21 chr11 84826756 84826949 -37016907 - B3 SINE B2 -15 201 1 8 1232 1329 102 11 11 chr11 84827017 84827206 -37016650 - B2_Mm2 SINE B2 -6 189 1 8 1232 889 123 0 0 chr11 84827472 84827602 -37016254 - B1_Mur4 SINE Alu -15 135 6 8 1232 557 235 149 61 chr11 84827640 84827821 -37016035 - B3A SINE B2 -1 197 1 8 1232 297 291 116 14 chr11 84827946 84828133 -37015723 + MLT1C LTR MaLR 278 467 0 8 1232 644 171 271 0 chr11 84828278 84828448 -37015408 - B3 SINE B2 0 216 1 8 1232 299 267 94 55 chr11 84828461 84828489 -37015367 - B1F SINE Alu 0 149 115 8 1232 1512 68 16 0 chr11 84828489 84828679 -37015177 + B2_Mm2 SINE B2 3 195 0 8 1232 349 254 21 16 chr11 84828679 84828778 -37015078 - PB1D10 SINE Alu -35 114 17 8 1232 682 200 8 0 chr11 84829010 84829135 -37014721 - B1_Mur2 SINE Alu -7 142 17 8 1232 390 301 17 73 chr11 84829135 84829189 -37014667 - ID_B1 SINE B4 -7 217 49 8 1232 753 133 0 0 chr11 84829438 84829558 -37014298 - B1_Mus1 SINE Alu 0 148 29 8 1232 511 338 14 45 chr11 84829557 84829780 -37014076 - B4A SINE B4 -76 216 1 8 1232 969 239 14 14 chr11 84829805 84830021 -37013835 - B3 SINE B2 0 216 1 8 1232 21 36 0 0 chr11 84830030 84830058 -37013798 + AT_rich Low_complexity Low_complexity 1 28 0 8 1232 1244 83 72 0 chr11 84830125 84830305 -37013551 + B2_Mm2 SINE B2 1 193 -2 8 1232 735 104 0 0 chr11 84830487 84830593 -37013263 - B2_Mm2 SINE B2 -88 107 2 8 1232 1228 61 0 0 chr11 84830791 84830938 -37012918 + B1_Mm SINE Alu 1 147 0 8 1232 261 0 0 0 chr11 84830939 84830968 -37012888 + (TA)n Simple_repeat Simple_repeat 1 29 0 8 1232 321 182 77 13 chr11 84831763 84831841 -37012015 - MER3 DNA MER1_type -98 111 29 8 1232 418 333 0 22 chr11 84831988 84832123 -37011733 + ID_B1 SINE B4 84 215 -9 8 1232 1045 215 18 46 chr11 84832306 84832589 -37011267 + RMER15 LTR ERVL 299 573 -2 8 1232 235 324 0 0 chr11 84832595 84832663 -37011193 + ID4 SINE ID 16 83 0 8 1232 610 276 45 26 chr11 84833057 84833213 -37010643 - RSINE1 SINE B4 -4 161 3 8 1232 243 0 0 0 chr11 84833398 84833425 -37010431 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1232 576 228 114 0 chr11 84833506 84833629 -37010227 - B1_Mur2 SINE Alu -5 144 8 8 1232 216 0 0 0 chr11 84833795 84833819 -37010037 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1232 640 167 96 22 chr11 84833830 84833965 -37009891 + B1_Mur1 SINE Alu 1 145 -4 8 1232 211 240 0 20 chr11 84834017 84834068 -37009788 + PB1D10 SINE Alu 21 70 -47 8 1232 542 300 7 28 chr11 84834116 84834260 -37009596 + B3 SINE B2 1 141 -75 8 1232 556 273 153 12 chr11 84834226 84834467 -37009389 - MER2 DNA MER2_type -30 315 41 8 1232 852 215 84 35 chr11 84834538 84834740 -37009116 + B3 SINE B2 1 212 -4 8 1232 391 264 233 11 chr11 84834740 84834916 -37008940 + B3 SINE B2 2 216 0 8 1232 23 33 0 0 chr11 84834919 84834949 -37008907 + AT_rich Low_complexity Low_complexity 1 30 0 8 1232 199 130 51 13 chr11 84835054 84835132 -37008724 + (TTTA)n Simple_repeat Simple_repeat 3 83 0 8 1232 516 232 95 8 chr11 84835191 84835317 -37008539 + B1_Mur2 SINE Alu 3 139 -10 8 1232 215 310 17 0 chr11 84835321 84835379 -37008477 + polypurine Low_complexity Low_complexity 2 60 0 8 1232 450 281 42 0 chr11 84835400 84835496 -37008360 - RSINE1 SINE B4 -15 150 51 8 1232 405 157 29 0 chr11 84835490 84835560 -37008296 + ORR1B1-int LTR MaLR 124 195 -1314 9 1232 306 0 0 0 chr11 84836836 84836870 -37006986 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 9 1232 328 154 39 0 chr11 84836870 84836948 -37006908 - L1Md_A LINE L1 -3 6579 6499 9 1232 1184 62 0 0 chr11 84836973 84837119 -37006737 - B1_Mm SINE Alu 0 147 2 9 1232 643 171 9 0 chr11 84837120 84837225 -37006631 + B1_Mur2 SINE Alu 26 131 -18 9 1232 2780 288 25 67 chr11 84837239 84837414 -37006442 + Lx7 LINE L1 6250 6411 -1285 9 1232 993 100 50 0 chr11 84837414 84837554 -37006302 - B1_Mus1 SINE Alu 0 148 2 9 1232 2780 288 25 67 chr11 84837554 84837625 -37006231 + Lx7 LINE L1 6412 6459 -1237 9 1232 1464 69 16 0 chr11 84837625 84837813 -37006043 - B2_Mm1a SINE B2 -1 192 2 9 1232 2780 288 25 67 chr11 84837813 84838663 -37005193 + Lx7 LINE L1 6460 7302 -394 9 1232 582 313 77 22 chr11 84838687 84838870 -37004986 + B4A SINE B4 99 291 -1 9 1232 267 189 0 0 chr11 84838896 84838949 -37004907 + A-rich Low_complexity Low_complexity 4 56 0 9 1232 2172 113 71 3 chr11 84839413 84839749 -37004107 + ORR1B2 LTR MaLR 1 359 -8 9 1232 33 25 0 0 chr11 84839786 84839826 -37004030 + AT_rich Low_complexity Low_complexity 1 40 0 9 1232 282 291 36 72 chr11 84840825 84840936 -37002920 - PB1D10 SINE Alu -1 116 10 9 1232 210 37 0 0 chr11 84841008 84841035 -37002821 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1232 358 275 0 0 chr11 84841154 84841223 -37002633 + ID_B1 SINE B4 84 152 -72 9 1232 229 344 133 20 chr11 84841277 84841375 -37002481 + PB1D7 SINE Alu 11 119 -1 9 1232 23 33 0 0 chr11 84841376 84841406 -37002450 + AT_rich Low_complexity Low_complexity 1 30 0 9 1232 788 172 14 7 chr11 84841406 84841552 -37002304 + B1_Mus1 SINE Alu 1 147 -1 9 1232 950 230 24 38 chr11 84841601 84841813 -37002043 + B3 SINE B2 8 216 0 9 1232 561 347 96 5 chr11 84842003 84842200 -37001656 - B4A SINE B4 -73 219 5 9 1232 295 220 183 21 chr11 84842210 84842303 -37001553 - PB1D10 SINE Alu 0 117 10 9 1232 365 277 44 18 chr11 84842421 84842535 -37001321 + PB1D10 SINE Alu 1 117 0 9 1232 261 323 128 45 chr11 84842535 84842553 -37001303 + B4A SINE B4 86 228 -64 9 1232 362 281 16 88 chr11 84842780 84842905 -37000951 - PB1D9 SINE Alu -4 116 1 9 1232 646 263 130 11 chr11 84842905 84842973 -37000883 - ID_B1 SINE B4 -126 98 10 9 1232 456 239 62 35 chr11 84843757 84843870 -36999986 + ID_B1 SINE B4 109 224 0 9 1232 299 252 131 0 chr11 84844352 84844458 -36999398 - MIR SINE MIR -115 161 37 9 1232 857 223 85 6 chr11 84844836 84845012 -36998844 + B3 SINE B2 3 192 -24 9 1232 186 43 0 0 chr11 84845033 84845056 -36998800 + (CATA)n Simple_repeat Simple_repeat 3 25 0 9 1232 495 0 0 0 chr11 84845056 84845111 -36998745 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 9 1232 1218 42 0 0 chr11 84845114 84845258 -36998598 - B1_Mus2 SINE Alu -3 144 1 9 1232 344 239 0 14 chr11 84846196 84846268 -36997588 + ID SINE ID 1 71 -153 9 1232 322 257 20 24 chr11 84846268 84846294 -36997562 + ID4 SINE ID 1 96 -56 9 1232 710 138 18 0 chr11 84846984 84847093 -36996763 - PB1D9 SINE Alu 0 120 10 9 1232 358 273 13 115 chr11 84847005 84847162 -36996694 - MT2B LTR ERVL -351 250 110 9 1232 1033 232 29 0 chr11 84848056 84848263 -36995593 - B3 SINE B2 -3 213 1 9 1232 1453 53 16 0 chr11 84848355 84848544 -36995312 + B2_Mm1t SINE B2 2 193 0 9 1232 33 0 0 0 chr11 84848599 84848632 -36995224 + AT_rich Low_complexity Low_complexity 1 33 0 9 1232 643 288 19 0 chr11 84848635 84848795 -36995061 - RSINE1 SINE B4 0 165 3 9 1232 715 234 0 7 chr11 84848958 84849100 -36994756 - B1_Mur1 SINE Alu -8 141 1 9 1232 360 43 0 0 chr11 84849104 84849150 -36994706 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1232 440 35 0 17 chr11 84849150 84849208 -36994648 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 9 1232 239 276 12 73 chr11 84849270 84849352 -36994504 + ID4_ SINE ID 5 81 -2 9 1232 193 102 0 58 chr11 84849358 84849410 -36994446 + A-rich Low_complexity Low_complexity 3 51 0 9 1232 419 102 0 28 chr11 84849695 84849766 -36994090 + (GGGGA)n Simple_repeat Simple_repeat 3 71 0 9 1232 1005 228 15 0 chr11 84850240 84850442 -36993414 - B3 SINE B2 -11 205 1 9 1232 34 51 0 37 chr11 84850451 84850492 -36993364 + AT_rich Low_complexity Low_complexity 1 41 0 9 1232 1188 48 0 7 chr11 84850492 84850639 -36993217 - B1_Mus2 SINE Alu 0 147 2 9 1232 34 51 0 37 chr11 84850639 84850678 -36993178 + AT_rich Low_complexity Low_complexity 1 37 0 9 1232 665 242 0 0 chr11 84850699 84850831 -36993025 + B1_Mur1 SINE Alu 1 132 -17 9 1232 470 291 101 29 chr11 84850910 84851048 -36992808 - B3 SINE B2 -68 148 1 9 1232 796 235 35 18 chr11 84851048 84851217 -36992639 - B3 SINE B2 -13 203 32 9 1232 235 246 0 34 chr11 84851508 84851523 -36992333 + MT2B LTR ERVL 152 164 -437 9 1232 299 217 33 0 chr11 84851523 84851578 -36992278 + B1_Mus2 SINE Alu 1 57 -90 9 1232 788 202 0 0 chr11 84851578 84851707 -36992149 + B3 SINE B2 2 130 -86 9 1232 270 0 0 0 chr11 84851852 84851882 -36991974 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1232 650 289 36 75 chr11 84851918 84852356 -36991500 + Lx9 LINE L1 7209 7629 -15 9 1232 23 0 0 0 chr11 84852448 84852471 -36991385 + AT_rich Low_complexity Low_complexity 1 23 0 9 1232 186 43 0 0 chr11 84852590 84852613 -36991243 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1232 297 92 0 133 chr11 84852906 84853019 -36990837 + A-rich Low_complexity Low_complexity 1 98 0 9 1232 704 235 7 0 chr11 84853223 84853359 -36990497 + B1_Mur2 SINE Alu 2 138 -11 9 1232 477 105 0 0 chr11 84853966 84854052 -36989804 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 9 1232 566 186 96 52 chr11 84854142 84854278 -36989578 - B1_Mur1 SINE Alu -5 144 3 9 1232 989 153 0 32 chr11 84854301 84854456 -36989400 - B1_Mur4 SINE Alu 0 150 1 9 1232 1934 34 0 0 chr11 84855128 84855365 -36988491 - MERVL-int LTR ERVL -5248 237 1 9 1232 434 106 10 25 chr11 84855365 84855489 -36988367 - MT2_Mm LTR ERVL 0 562 422 9 1232 625 232 0 101 chr11 84855814 84855953 -36987903 + ID_B1 SINE B4 93 217 -7 9 1232 873 219 61 10 chr11 84856265 84856463 -36987393 - B3 SINE B2 -8 208 1 9 1232 21 0 0 0 chr11 84856493 84856514 -36987342 + AT_rich Low_complexity Low_complexity 1 21 0 9 1232 397 255 53 7 chr11 84856666 84856816 -36987040 + L1_Mur3 LINE L1 1818 1974 -3906 9 1232 239 0 32 0 chr11 84856838 84856869 -36986987 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1232 279 79 0 0 chr11 84856872 84856910 -36986946 + (CCA)n Simple_repeat Simple_repeat 3 40 0 9 1232 337 186 0 65 chr11 84856910 84857002 -36986854 + L1_Mur3 LINE L1 2079 2164 -3716 9 1232 1101 115 22 22 chr11 84857187 84857365 -36986491 - B2_Mm1t SINE B2 -14 179 2 9 1232 424 219 0 10 chr11 84857365 84857462 -36986394 + L1_Mur3 LINE L1 2185 2280 -3600 9 1232 876 129 0 8 chr11 84857491 84857624 -36986232 - B1_Mur4 SINE Alu -14 136 5 9 1232 216 0 0 0 chr11 84857630 84857654 -36986202 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1232 328 254 0 0 chr11 84857703 84857766 -36986090 - B1_Mur3 SINE Alu -79 70 8 9 1232 217 333 54 0 chr11 84857891 84857984 -36985872 + MIRb SINE MIR 103 200 -68 9 1232 538 353 47 7 chr11 84858553 84858733 -36985123 + B4A SINE B4 1 182 -110 9 1232 1955 150 55 25 chr11 84858733 84859095 -36984761 + ORR1D1 LTR MaLR 2 374 0 9 1232 461 358 55 35 chr11 84859095 84859114 -36984742 + B4 SINE B4 183 204 -88 9 1232 304 218 36 0 chr11 84859097 84859152 -36984704 + RSINE1 SINE B4 73 129 -36 9 1232 3505 152 60 13 chr11 84859231 84859902 -36983954 + RMER1A Other Other 319 1020 -10 9 1232 17182 54 3 4 chr11 84859916 84862910 -36980946 - L1Md_F2 LINE L1 0 6582 3592 9 1232 843 162 21 0 chr11 84863328 84863470 -36980386 - B1_Mur4 SINE Alu -1 149 5 9 1232 21 0 0 0 chr11 84863480 84863501 -36980355 + AT_rich Low_complexity Low_complexity 1 21 0 9 1232 559 212 28 55 chr11 84863517 84863662 -36980194 - B1_Mus2 SINE Alu -6 141 1 9 1232 213 167 0 0 chr11 84863713 84863749 -36980107 - B1_Mus1 SINE Alu -102 46 11 9 1232 1148 75 7 0 chr11 84864291 84864438 -36979418 + B1_Mus1 SINE Alu 1 148 0 9 1232 506 299 21 63 chr11 84865023 84865166 -36978690 + ID_B1 SINE B4 81 217 -7 9 1232 630 143 193 0 chr11 84865401 84865520 -36978336 + B1_Mur4 SINE Alu 1 142 -8 9 1232 237 65 0 0 chr11 84865530 84865561 -36978295 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1232 5434 35 0 0 chr11 84865871 84866509 -36977347 - L1Md_T LINE L1 0 6582 5945 9 1232 1300 84 28 0 chr11 84866692 84866871 -36976985 - B2_Mm1a SINE B2 -9 184 1 9 1232 22 35 0 0 chr11 84867062 84867091 -36976765 + AT_rich Low_complexity Low_complexity 1 29 0 9 1232 23 33 0 0 chr11 84868118 84868148 -36975708 + AT_rich Low_complexity Low_complexity 1 30 0 9 1232 530 241 53 9 chr11 84868578 84868691 -36975165 + PB1D9 SINE Alu 2 119 -1 9 1232 286 217 89 89 chr11 84868719 84868751 -36975105 + MT2B LTR ERVL 140 240 -361 9 1232 347 206 14 14 chr11 84868751 84868820 -36975036 + B1_Mur4 SINE Alu 18 86 -64 9 1232 1150 63 0 0 chr11 84868820 84868962 -36974894 + B1_Mus2 SINE Alu 2 143 -4 9 1232 234 289 9 93 chr11 84868962 84869001 -36974855 + PB1D7 SINE Alu 86 116 -4 9 1232 189 0 0 0 chr11 84869377 84869398 -36974458 + (TAA)n Simple_repeat Simple_repeat 3 23 0 9 1232 1684 158 131 11 chr11 84869479 84869831 -36974025 + ORR1B1 LTR MaLR 1 394 0 9 1232 183 114 0 0 chr11 84869846 84869881 -36973975 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1232 272 187 53 0 chr11 84870422 84870497 -36973359 - Lx8 LINE L1 -3 7470 7392 1 1232 395 287 110 0 chr11 84870587 84870723 -36973133 + RSINE1 SINE B4 5 155 -10 1 1232 449 34 17 0 chr11 84870747 84870806 -36973050 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1232 846 56 0 0 chr11 84870861 84870969 -36972887 + (GAAA)n Simple_repeat Simple_repeat 1 108 0 1 1232 368 294 56 56 chr11 84871105 84871231 -36972625 + PB1 SINE Alu 1 126 -1 1 1232 961 248 0 27 chr11 84871232 84871452 -36972404 + B3 SINE B2 2 215 -1 1 1232 878 168 113 16 chr11 84871533 84871727 -36972129 + B3 SINE B2 3 215 -1 1 1232 209 111 67 0 chr11 84871819 84871864 -36971992 + T-rich Low_complexity Low_complexity 2 49 0 1 1232 250 267 173 0 chr11 84871866 84871941 -36971915 - B1_Mm SINE Alu -55 92 5 1 1232 844 173 0 21 chr11 84873163 84873305 -36970551 - B1_Mur3 SINE Alu -8 141 3 1 1232 318 297 53 67 chr11 84873414 84873623 -36970233 + L1MEa LINE L1 84 289 -6174 1 1232 608 207 16 40 chr11 84873952 84874078 -36969778 + RSINE1 SINE B4 3 125 -40 1 1232 194 91 30 0 chr11 84874078 84874111 -36969745 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1232 333 0 0 0 chr11 84874111 84874147 -36969709 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1232 642 160 12 158 chr11 84874270 84874441 -36969415 + B1_Mus1 SINE Alu 1 146 -2 1 1232 383 314 72 55 chr11 84874461 84874814 -36969042 + L1MEa LINE L1 953 1334 -5050 1 1232 366 256 26 0 chr11 84874814 84874892 -36968964 - PB1D10 SINE Alu -5 112 33 1 1232 186 43 0 0 chr11 84874908 84874931 -36968925 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 1 1232 2413 106 35 68 chr11 84874949 84875374 -36968482 + IAPLTR2a LTR ERVK 1 411 0 1 1232 47708 16 4 0 chr11 84875378 84880953 -36962903 + IAPEz-int LTR ERVK 884 6481 0 1 1232 2437 106 36 50 chr11 84880953 84881370 -36962486 + IAPLTR2a LTR ERVK 1 411 0 1 1232 238 118 0 0 chr11 84881370 84881413 -36962443 - B1F SINE Alu -25 124 82 1 1232 307 284 21 21 chr11 84881624 84881721 -36962135 + PB1D9 SINE Alu 3 99 -21 1 1232 1224 81 17 23 chr11 84881935 84882111 -36961745 + B2_Mm2 SINE B2 2 176 -19 1 1232 865 116 180 67 chr11 84882290 84882484 -36961372 + B3 SINE B2 1 216 0 1 1232 1636 37 0 0 chr11 84882669 84882858 -36960998 - B2_Mm1t SINE B2 -4 189 1 1 1232 894 216 106 43 chr11 84882858 84883207 -36960649 - L1MC1 LINE L1 -9 6324 5954 1 1232 26 30 0 0 chr11 84883551 84883584 -36960272 + AT_rich Low_complexity Low_complexity 1 33 0 1 1232 287 306 266 4 chr11 84883666 84883899 -36959957 + L2a LINE L2 3069 3362 -64 1 1232 1078 298 96 14 chr11 84884057 84884503 -36959353 + Lx8 LINE L1 6791 7273 -200 1 1232 1033 97 32 54 chr11 84884559 84884744 -36959112 + B2_Mm2 SINE B2 1 181 -14 1 1232 21 0 0 0 chr11 84884835 84884856 -36959000 + AT_rich Low_complexity Low_complexity 1 21 0 1 1232 712 276 119 24 chr11 84884883 84884940 -36958916 - B4 SINE B4 -2 290 231 1 1232 841 277 76 18 chr11 84884940 84885216 -36958640 - B4A SINE B4 0 292 1 1 1232 913 240 124 5 chr11 84885216 84885410 -36958446 - B4A SINE B4 -62 230 15 1 1232 343 272 32 32 chr11 84885472 84885567 -36958289 - RSINE1 SINE B4 -28 137 43 1 1232 653 212 83 0 chr11 84885701 84885833 -36958023 + B1_Mus2 SINE Alu 3 145 -2 1 1232 861 236 54 25 chr11 84886986 84887144 -36956712 + B3 SINE B2 1 165 -51 1 1232 258 32 0 0 chr11 84887144 84887175 -36956681 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1232 861 236 54 25 chr11 84887175 84887220 -36956636 + B3 SINE B2 166 210 -6 1 1232 315 0 0 0 chr11 84887316 84887351 -36956505 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1232 450 0 0 0 chr11 84887351 84887400 -36956456 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1232 507 227 305 0 chr11 84887592 84887746 -36956110 + B3 SINE B2 2 202 -14 1 1232 1076 87 0 0 chr11 84888357 84888495 -36955361 + B1_Mus1 SINE Alu 1 138 -10 1 1232 351 0 0 0 chr11 84888495 84888534 -36955322 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1232 8076 84 27 14 chr11 84888534 84889708 -36954148 + Lx3C LINE L1 5783 6971 -5 1 1232 219 154 0 25 chr11 84889727 84889767 -36954089 + B3A SINE B2 1 39 -159 1 1232 1224 57 0 0 chr11 84889770 84889928 -36953928 + B2_Mm2 SINE B2 2 159 -36 1 1232 315 0 0 0 chr11 84889928 84889963 -36953893 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 1 1232 688 267 76 0 chr11 84889969 84890141 -36953715 + B3 SINE B2 27 211 -5 1 1232 351 276 0 33 chr11 84890177 84890267 -36953589 + B4 SINE B4 7 93 -199 1 1232 745 119 150 8 chr11 84890269 84890396 -36953460 + B1_Mus2 SINE Alu 3 147 0 1 1232 180 0 0 0 chr11 84890401 84890421 -36953435 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1232 22 0 0 0 chr11 84891179 84891201 -36952655 + AT_rich Low_complexity Low_complexity 1 22 0 1 1232 810 257 34 0 chr11 84891265 84891471 -36952385 + B3 SINE B2 4 216 0 1 1232 1121 56 28 0 chr11 84891578 84891720 -36952136 - B1_Mus2 SINE Alu -1 146 1 1 1232 469 138 49 78 chr11 84891875 84891977 -36951879 + B1_Mur3 SINE Alu 44 142 -7 1 1232 490 271 51 0 chr11 84892845 84892963 -36950893 + MER21B LTR ERV1 193 316 -547 1 1232 2930 169 48 16 chr11 84892968 84893535 -36950321 - RMER4B LTR ERVK 0 585 1 1 1232 516 253 102 48 chr11 84894102 84894289 -36949567 - B3A SINE B2 0 198 2 1 1232 438 273 78 8 chr11 84894884 84895013 -36948843 - B1F1 SINE Alu -11 138 1 1 1232 373 269 10 136 chr11 84895097 84895126 -36948730 - B4A SINE B4 -41 251 102 1 1232 810 119 7 50 chr11 84895126 84895267 -36948589 - B1_Mur4 SINE Alu 0 150 16 1 1232 369 0 0 0 chr11 84895272 84895313 -36948543 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1232 328 269 10 136 chr11 84895313 84895335 -36948521 - B4 SINE B4 -192 100 79 1 1232 412 257 45 22 chr11 84895439 84895581 -36948275 - PB1D10 SINE Alu -1 149 1 1 1232 1043 64 42 14 chr11 84895785 84895927 -36947929 + B1_Mus2 SINE Alu 2 147 0 1 1232 244 0 56 0 chr11 84895932 84895968 -36947888 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1232 205 200 0 0 chr11 84895986 84896026 -36947830 + T-rich Low_complexity Low_complexity 1 40 0 1 1232 820 179 0 36 chr11 84896054 84896193 -36947663 - B1_Mur2 SINE Alu -6 143 10 1 1232 434 264 34 57 chr11 84896209 84896386 -36947470 - L1MB7 LINE L1 0 6184 6012 1 1232 268 266 44 59 chr11 84896452 84896588 -36947268 - L1MB7 LINE L1 -151 6033 5900 1 1232 758 243 58 21 chr11 84896642 84896831 -36947025 - B3A SINE B2 -2 196 1 1 1232 225 83 0 0 chr11 84896985 84897021 -36946835 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1232 363 267 228 31 chr11 84897021 84897249 -36946607 - L1MB7 LINE L1 -607 5571 5299 1 1232 802 228 122 20 chr11 84897538 84897735 -36946121 + RLTR12B LTR ERVK 39 255 -273 1 1232 258 105 0 0 chr11 84897874 84897912 -36945944 + (CGTG)n Simple_repeat Simple_repeat 1 38 0 1 1232 2080 106 51 79 chr11 84898162 84898553 -36945303 + RMER10B LTR ERVL 19 398 0 1 1232 1051 93 33 0 chr11 84898814 84898965 -36944891 + B2_Mm2 SINE B2 2 157 -38 1 1232 261 0 0 0 chr11 84898965 84898994 -36944862 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1232 255 125 71 0 chr11 84899030 84899086 -36944770 + Lx9 LINE L1 7579 7638 -6 1 1232 1205 55 0 0 chr11 84899094 84899240 -36944616 + B1_Mus2 SINE Alu 2 147 0 1 1232 396 306 35 81 chr11 84899273 84899295 -36944561 + B4 SINE B4 70 172 -120 1 1232 911 128 14 0 chr11 84899295 84899436 -36944420 + B1_Mus1 SINE Alu 6 148 0 1 1232 396 306 35 81 chr11 84899436 84899447 -36944409 + B4 SINE B4 173 235 -57 1 1232 324 272 36 24 chr11 84899877 84899960 -36943896 + B1_Mur1 SINE Alu 57 140 -9 1 1232 189 0 0 0 chr11 84899960 84899981 -36943875 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1232 824 196 0 7 chr11 84900012 84900161 -36943695 + B1_Mus1 SINE Alu 1 148 0 1 1232 318 326 61 0 chr11 84900230 84900328 -36943528 - B4A SINE B4 -3 289 186 1 1232 557 68 427 0 chr11 84900419 84900522 -36943334 - B1_Mus1 SINE Alu -1 147 1 1 1232 3879 204 67 80 chr11 84900988 84902026 -36941830 + Lx7 LINE L1 6342 7357 -339 1 1232 207 0 0 0 chr11 84902026 84902049 -36941807 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 1 1232 3879 204 67 80 chr11 84902049 84902100 -36941756 + Lx7 LINE L1 7358 7416 -280 1 1232 908 145 20 14 chr11 84902100 84902247 -36941609 - B1_Mus1 SINE Alu 0 148 1 1 1232 460 191 43 51 chr11 84902247 84902385 -36941471 + Lx7 LINE L1 7560 7696 0 1 1232 1850 134 108 33 chr11 84903110 84903383 -36940473 + L1_Mur2 LINE L1 857 1122 -5964 1 1232 1050 115 42 47 chr11 84903383 84903574 -36940282 + B2_Mm2 SINE B2 1 190 -5 1 1232 1268 27 0 0 chr11 84903580 84903726 -36940130 + B1_Mm SINE Alu 2 147 0 1 1232 260 27 0 26 chr11 84903735 84903773 -36940083 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1232 3988 149 58 7 chr11 84903773 84904606 -36939250 + L1_Mur2 LINE L1 1167 2049 -3828 1 1232 428 122 0 12 chr11 84904621 84904704 -36939152 + (TCTCCC)n Simple_repeat Simple_repeat 1 82 0 1 1232 468 99 0 0 chr11 84904705 84904776 -36939080 + L1_Mur2 LINE L1 2061 2131 -3746 1 1232 7541 142 37 11 chr11 84904797 84906473 -36937383 + Lx5 LINE L1 5310 7045 -5 1 1232 3864 127 118 35 chr11 84906491 84907147 -36936709 + RMER19A LTR ERVK 1 720 -17 1 1232 1148 82 82 0 chr11 84907147 84907317 -36936539 + B2_Mm2 SINE B2 3 186 -9 1 1232 3864 127 118 35 chr11 84907317 84907337 -36936519 + RMER19A LTR ERVK 721 733 -4 1 1232 791 192 64 29 chr11 84907408 84907580 -36936276 - B3A SINE B2 -16 182 5 1 1232 920 35 0 9 chr11 84908375 84908491 -36935365 - B1_Mus1 SINE Alu -12 136 22 1 1232 449 203 137 55 chr11 84908477 84908623 -36935233 - RMER12 LTR ERVK -103 1219 1062 1 1232 307 131 20 176 chr11 84909314 84909416 -36934440 - RLTR22_Mur LTR ERVK -544 1304 1219 1 1232 1582 228 62 128 chr11 84909422 84910344 -36933512 - RMER12 LTR ERVK -964 844 1 1 1232 414 227 89 40 chr11 84910471 84910572 -36933284 + ID_B1 SINE B4 80 185 -39 1 1232 373 218 81 90 chr11 84910480 84910591 -36933265 + PB1D10 SINE Alu 8 117 0 1 1232 300 102 0 0 chr11 84910599 84910648 -36933208 + (CCA)n Simple_repeat Simple_repeat 1 49 0 1 1232 183 42 0 0 chr11 84910942 84910966 -36932890 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1232 1476 42 0 46 chr11 84911456 84911653 -36932203 + B2_Mm1a SINE B2 2 189 -4 1 1232 292 254 16 0 chr11 84911728 84911791 -36932065 - MLT1D LTR MaLR -441 64 1 1 1232 337 374 6 78 chr11 84911792 84911972 -36931884 + L1MEf LINE L1 505 671 -5876 1 1232 348 316 84 11 chr11 84912194 84912479 -36931377 + L1MEf LINE L1 1044 1349 -5291 1 1232 529 297 92 33 chr11 84912733 84912886 -36930970 - B3 SINE B2 -44 172 11 1 1232 223 200 54 122 chr11 84912821 84912895 -36930961 - ID4 SINE ID -9 74 6 1 1232 357 260 0 126 chr11 84912928 84912942 -36930914 - B4 SINE B4 -108 184 106 1 1232 415 245 60 60 chr11 84912942 84913016 -36930840 - B1_Mur2 SINE Alu -49 100 21 1 1232 2284 179 19 17 chr11 84913016 84913436 -36930420 + MTC LTR MaLR 1 421 0 1 1232 415 245 60 60 chr11 84913436 84913461 -36930395 - B1_Mur2 SINE Alu -129 20 1 1 1232 350 256 103 40 chr11 84913680 84913694 -36930162 + ID_B1 SINE B4 70 201 -21 1 1232 437 248 109 9 chr11 84913694 84913804 -36930052 + B1F SINE Alu 3 123 -26 1 1232 851 228 32 16 chr11 84914157 84914344 -36929512 + B3A SINE B2 1 190 -8 1 1232 646 234 75 53 chr11 84914504 84914730 -36929126 + L1MEf LINE L1 4941 5171 -1373 1 1232 297 151 0 0 chr11 84914855 84914908 -36928948 + T-rich Low_complexity Low_complexity 1 53 0 1 1232 1033 95 0 39 chr11 84914908 84915061 -36928795 - B1_Mus1 SINE Alu 0 148 2 1 1232 443 209 226 15 chr11 84915064 84915268 -36928588 + L1MEf LINE L1 5477 5723 -821 1 1232 640 181 34 25 chr11 84915474 84915593 -36928263 - PB1D9 SINE Alu 0 120 1 1 1232 1282 112 11 5 chr11 84915843 84916032 -36927824 + B2_Mm2 SINE B2 2 191 -4 1 1232 32 57 0 0 chr11 84916114 84916167 -36927689 + AT_rich Low_complexity Low_complexity 1 53 0 1 1232 925 221 82 0 chr11 84916172 84916332 -36927524 + B3 SINE B2 1 176 -40 1 1232 450 0 0 0 chr11 84916332 84916382 -36927474 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1232 925 221 82 0 chr11 84916382 84916416 -36927440 + B3 SINE B2 177 210 -6 1 1232 929 116 72 0 chr11 84916628 84916766 -36927090 - B1_Mur4 SINE Alu -1 149 2 1 1232 614 226 7 28 chr11 84917157 84917298 -36926558 + ID_B1 SINE B4 83 220 -4 1 1232 369 260 72 10 chr11 84917603 84917700 -36926156 + PB1D10 SINE Alu 15 117 0 1 1232 1242 47 0 0 chr11 84917700 84917848 -36926008 + B1_Mus1 SINE Alu 1 148 0 1 1232 501 192 179 24 chr11 84917873 84917996 -36925860 + B1_Mus2 SINE Alu 6 147 0 1 1232 498 244 26 17 chr11 84918029 84918146 -36925710 + B3 SINE B2 1 118 -98 1 1232 21 0 0 0 chr11 84918157 84918178 -36925678 + AT_rich Low_complexity Low_complexity 1 21 0 1 1232 341 281 259 7 chr11 84918436 84918583 -36925273 + B3A SINE B2 2 185 -13 1 1232 39 68 0 0 chr11 84918583 84918657 -36925199 + AT_rich Low_complexity Low_complexity 1 74 0 1 1232 602 259 174 9 chr11 84918674 84918892 -36924964 + B4A SINE B4 25 278 -14 1 1232 370 274 0 73 chr11 84919035 84919145 -36924711 + RSINE1 SINE B4 3 104 -61 1 1232 1179 56 50 0 chr11 84919145 84919306 -36924550 + B2_Mm2 SINE B2 2 170 -25 1 1232 197 33 33 0 chr11 84919311 84919341 -36924515 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1232 1342 222 120 29 chr11 84919474 84919849 -36924007 - MTC LTR MaLR -12 409 1 1 1232 1160 50 0 0 chr11 84919888 84920027 -36923829 + B1_Mus2 SINE Alu 1 139 -8 1 1232 232 152 12 60 chr11 84920284 84920368 -36923488 + GA-rich Low_complexity Low_complexity 3 82 0 1 1232 231 152 21 21 chr11 84920941 84920988 -36922868 + MIR SINE MIR 212 258 -4 1 1232 30 0 0 0 chr11 84921039 84921069 -36922787 + AT_rich Low_complexity Low_complexity 1 30 0 1 1232 219 250 143 0 chr11 84921418 84921474 -36922382 + ID4_ SINE ID 6 69 -14 1 1232 660 241 44 0 chr11 84921746 84921883 -36921973 + B1_Mur1 SINE Alu 4 146 -3 1 1232 707 187 0 13 chr11 84921998 84922150 -36921706 + GA-rich Low_complexity Low_complexity 2 151 0 1 1232 525 254 101 7 chr11 84922173 84922312 -36921544 + RSINE1 SINE B4 2 153 -12 1 1232 1335 52 12 6 chr11 84922391 84922564 -36921292 - B2_Mm1t SINE B2 -18 175 2 1 1232 745 284 58 62 chr11 84922601 84922860 -36920996 + B4A SINE B4 14 271 -21 1 1232 324 0 0 0 chr11 84922870 84922906 -36920950 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1232 271 309 29 0 chr11 84923080 84923148 -36920708 + ID4_ SINE ID 14 83 0 1 1232 743 183 67 0 chr11 84923215 84923335 -36920521 + B1_Mur2 SINE Alu 9 136 -13 1 1232 238 321 35 23 chr11 84923403 84923489 -36920367 + B4A SINE B4 85 171 -121 1 1232 426 248 18 54 chr11 84923414 84923525 -36920331 + PB1D10 SINE Alu 11 117 0 1 1232 341 292 137 14 chr11 84923830 84923969 -36919887 + RMER30 DNA MER1_type 46 201 -1 1 1232 22 0 0 0 chr11 84924113 84924135 -36919721 + AT_rich Low_complexity Low_complexity 1 22 0 1 1232 210 337 23 11 chr11 84924143 84924230 -36919626 + B4A SINE B4 83 170 -122 1 1232 316 185 69 89 chr11 84924161 84924262 -36919594 + PB1D10 SINE Alu 17 115 -2 1 1232 1285 88 0 40 chr11 84924345 84924545 -36919311 - B2_Mm2 SINE B2 -2 193 2 1 1232 347 298 36 0 chr11 84925865 84925949 -36917907 + B4A SINE B4 1 87 -205 1 1232 476 272 60 26 chr11 84925971 84926122 -36917734 - Lx5 LINE L1 -706 6344 6189 1 1232 1007 278 85 44 chr11 84926123 84926675 -36917181 + Lx6 LINE L1 6508 7458 -2 1 1232 242 212 110 66 chr11 84926690 84926781 -36917075 + PB1D7 SINE Alu 20 114 -6 1 1232 237 214 282 0 chr11 84926781 84926793 -36917063 + B4A SINE B4 105 236 -56 1 1232 21 36 0 0 chr11 84926844 84926872 -36916984 + AT_rich Low_complexity Low_complexity 1 28 0 1 1232 891 148 30 0 chr11 84927248 84927383 -36916473 + B1_Mur4 SINE Alu 5 143 -7 1 1232 192 77 0 0 chr11 84927383 84927409 -36916447 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1232 1383 95 16 0 chr11 84927843 84928033 -36915823 + B2_Mm2 SINE B2 2 194 -1 1 1232 1149 68 0 0 chr11 84928152 84928298 -36915558 + B1_Mm SINE Alu 2 147 0 1 1232 2609 64 28 8 chr11 84928325 84928688 -36915168 + L1Md_F2 LINE L1 6207 6576 -6 1 1232 415 287 102 18 chr11 84928700 84928724 -36915132 - B2_Mm2 SINE B2 -9 186 159 1 1232 362 94 16 0 chr11 84928724 84928788 -36915068 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1232 573 229 206 0 chr11 84928788 84928930 -36914926 - B3 SINE B2 -42 174 6 1 1232 28 29 0 0 chr11 84928962 84928997 -36914859 + AT_rich Low_complexity Low_complexity 1 35 0 1 1232 434 195 47 78 chr11 84929009 84929137 -36914719 + B4A SINE B4 3 126 -166 1 1232 531 237 196 7 chr11 84929128 84929281 -36914575 + B3 SINE B2 30 211 -5 1 1232 748 240 81 11 chr11 84929284 84929469 -36914387 + B3 SINE B2 15 212 -4 1 1232 563 190 95 0 chr11 84929483 84929620 -36914236 - B1_Mur4 SINE Alu 0 150 1 1 1232 432 0 0 0 chr11 84929633 84929681 -36914175 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 1 1232 1306 104 5 5 chr11 84929681 84929874 -36913982 + B2_Mm2 SINE B2 2 194 -1 1 1232 357 224 15 0 chr11 84931061 84931128 -36912728 + ID_B1 SINE B4 85 152 -72 1 1232 541 283 16 8 chr11 84931136 84931264 -36912592 - MLT1A0 LTR MaLR -234 131 3 1 1232 21 0 0 0 chr11 84931475 84931496 -36912360 + AT_rich Low_complexity Low_complexity 1 21 0 1 1232 270 268 42 0 chr11 84931551 84931622 -36912234 - B1_Mur4 SINE Alu -71 79 6 1 1232 929 155 7 0 chr11 84931981 84932129 -36911727 + B1_Mur4 SINE Alu 2 150 0 1 1232 273 128 0 0 chr11 84932185 84932232 -36911624 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 1 1232 290 268 86 115 chr11 84932710 84932849 -36911007 - B4A SINE B4 0 292 158 1 1232 327 201 67 30 chr11 84932862 84932946 -36910910 - B4A SINE B4 -205 87 3 1 1232 279 83 0 0 chr11 84933172 84933208 -36910648 + MTD LTR MaLR 1 36 -383 1 1232 414 0 0 0 chr11 84933226 84933272 -36910584 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1232 209 182 0 0 chr11 84933273 84933306 -36910550 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 1 1232 375 250 91 0 chr11 84933447 84933535 -36910321 + B4A SINE B4 2 97 -195 1 1232 220 310 0 0 chr11 84933536 84933594 -36910262 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1 1232 412 266 26 26 chr11 84933642 84933758 -36910098 + ID_B1 SINE B4 109 224 0 1 1232 489 229 63 21 chr11 84933898 84934041 -36909815 + B1F2 SINE Alu 1 149 0 1 1232 281 220 8 135 chr11 84934148 84934274 -36909582 + ID_B1 SINE B4 80 189 -35 1 1232 527 176 8 120 chr11 84934162 84934296 -36909560 + B1_Mur3 SINE Alu 1 128 -21 1 19 7606 146 19 11 chr11 84934301 84935999 -36907857 + Lx2B LINE L1 5282 7000 0 1 1233 1246 103 38 0 chr11 84936005 84936190 -36907666 + B2_Mm1t SINE B2 2 193 0 1 1233 686 244 59 0 chr11 84936203 84936338 -36907518 + RSINE1 SINE B4 2 144 -21 1 1233 192 77 0 0 chr11 84936364 84936390 -36907466 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1233 368 355 48 37 chr11 84936407 84936499 -36907357 + B4 SINE B4 3 96 -196 1 1233 463 215 98 45 chr11 84936499 84936611 -36907245 + B1_Mur1 SINE Alu 2 148 -1 1 1233 833 153 27 27 chr11 84937015 84937153 -36906703 + B1_Mur1 SINE Alu 1 141 -8 1 1233 240 35 0 0 chr11 84937153 84937182 -36906674 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1 1233 380 343 28 56 chr11 84937319 84937461 -36906395 + ID_B1 SINE B4 78 215 -9 1 1233 605 199 320 0 chr11 84937513 84937669 -36906187 + B3 SINE B2 1 206 -10 1 1233 274 302 66 81 chr11 84937713 84937736 -36906120 + YREP_Mm Unknown Unknown 156 222 -1590 1 1233 705 226 52 8 chr11 84937736 84937870 -36905986 - B1_Mur1 SINE Alu 0 149 10 1 1233 274 302 66 81 chr11 84937870 84937911 -36905945 + YREP_Mm Unknown Unknown 223 350 -1462 1 1233 416 305 74 50 chr11 84937920 84937988 -36905868 + HAL1 LINE L1 2020 2085 -422 1 1233 1613 47 0 0 chr11 84937988 84938180 -36905676 + B2_Mm1t SINE B2 2 193 0 1 1233 416 305 74 50 chr11 84938180 84938408 -36905448 + HAL1 LINE L1 2086 2323 -184 1 1233 239 312 16 142 chr11 84938563 84938605 -36905251 - RSINE1 SINE B4 -41 124 94 1 1233 1195 103 16 21 chr11 84938605 84938793 -36905063 - B2_Mm2 SINE B2 -8 187 1 1 1233 239 312 16 142 chr11 84938793 84938877 -36904979 - RSINE1 SINE B4 -72 93 14 1 1233 45 34 0 0 chr11 84938904 84938963 -36904893 + AT_rich Low_complexity Low_complexity 1 59 0 1 1233 370 260 147 37 chr11 84938982 84939118 -36904738 + RSINE1 SINE B4 2 152 -13 1 1233 628 214 38 8 chr11 84939176 84939308 -36904548 + B1_Mur3 SINE Alu 14 149 0 1 1233 781 125 93 29 chr11 84939605 84939745 -36904111 + B1_Mur2 SINE Alu 1 149 0 1 1233 252 0 0 0 chr11 84939891 84939919 -36903937 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1233 673 285 87 29 chr11 84939919 84940125 -36903731 + B4 SINE B4 8 225 -67 1 1233 271 306 16 0 chr11 84940166 84940228 -36903628 + RSINE1 SINE B4 93 155 -10 1 1233 437 244 44 94 chr11 84940292 84940473 -36903383 + Tigger6b DNA MER2_type 1019 1190 -407 1 1233 824 203 128 0 chr11 84940491 84940678 -36903178 + B3 SINE B2 5 215 -1 1 1233 1076 83 28 0 chr11 84940689 84940833 -36903023 - B1_Mus1 SINE Alu 0 148 1 1 1233 496 264 64 7 chr11 84940935 84941076 -36902780 + B1F SINE Alu 1 149 0 1 1233 326 256 153 6 chr11 84941078 84941235 -36902621 + Tigger6b DNA MER2_type 1417 1596 -1 1 1233 789 209 26 0 chr11 84941273 84941426 -36902430 - RSINE1 SINE B4 -6 159 3 1 1233 365 311 58 0 chr11 84941446 84941549 -36902307 - B1F1 SINE Alu -38 111 3 1 1233 187 214 14 14 chr11 84941838 84941909 -36901947 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1233 258 233 49 16 chr11 84941938 84941999 -36901857 + ID4_ SINE ID 1 63 -20 1 1233 236 261 14 28 chr11 84942482 84942553 -36901303 + GA-rich Low_complexity Low_complexity 2 71 0 1 1233 478 293 45 39 chr11 84942557 84942713 -36901143 + RSINE1 SINE B4 3 159 -6 1 1233 488 123 40 192 chr11 84942842 84942965 -36900891 + B3 SINE B2 68 210 -6 1 1233 1620 32 5 0 chr11 84942965 84943154 -36900702 - B2_Mm1t SINE B2 -2 191 2 1 1233 446 123 40 192 chr11 84943154 84943181 -36900675 + B2_Mm2 SINE B2 174 195 0 1 1233 486 175 81 118 chr11 84943184 84943320 -36900536 + B1_Mur4 SINE Alu 19 149 -1 1 1233 277 256 179 0 chr11 84943360 84943438 -36900418 + ID_B1 SINE B4 128 219 -5 1 1233 615 184 104 0 chr11 84943565 84943670 -36900186 + B1_Mur1 SINE Alu 1 118 -31 1 1233 861 108 8 0 chr11 84943670 84943799 -36900057 + B2_Mm1a SINE B2 1 130 -63 1 1233 373 121 0 0 chr11 84943820 84943878 -36899978 + B2_Mm2 SINE B2 47 104 -91 1 1233 26 0 0 0 chr11 84943897 84943923 -36899933 + AT_rich Low_complexity Low_complexity 1 26 0 1 1233 248 170 0 0 chr11 84943923 84943970 -36899886 + B1F SINE Alu 96 142 -7 1 1233 259 395 0 0 chr11 84944554 84944663 -36899193 + PB1D10 SINE Alu 2 110 -7 1 1233 224 274 13 52 chr11 84944672 84944749 -36899107 + ID2 SINE ID 8 81 -2 1 1233 367 284 48 18 chr11 84945288 84945406 -36898450 - PB1D10 SINE Alu -24 125 4 1 1233 279 207 230 18 chr11 84946075 84946188 -36897668 + B1F2 SINE Alu 12 148 -1 1 1233 261 0 0 0 chr11 84946189 84946218 -36897638 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1233 21 82 0 0 chr11 84946585 84946634 -36897222 + AT_rich Low_complexity Low_complexity 1 49 0 1 1233 675 166 45 70 chr11 84946691 84946893 -36896963 - B2_Mm2 SINE B2 -12 183 2 1 1233 194 150 25 0 chr11 84947037 84947077 -36896779 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1233 373 275 76 64 chr11 84947158 84947329 -36896527 + Lx9 LINE L1 6959 7131 -513 1 1233 1175 49 0 7 chr11 84947332 84947467 -36896389 + B1_Mus2 SINE Alu 1 135 -12 1 1233 837 30 0 0 chr11 84947467 84947567 -36896289 + (GAGAA)n Simple_repeat Simple_repeat 4 103 0 1 1233 877 104 150 38 chr11 84947576 84947736 -36896120 + B2_Mm1t SINE B2 2 179 -14 1 1233 292 164 0 35 chr11 84947818 84947875 -36895981 + B2_Mm2 SINE B2 47 101 -94 1 1233 722 237 165 0 chr11 84948090 84948339 -36895517 + Lx9 LINE L1 7307 7596 -48 1 1233 390 299 43 21 chr11 84948420 84948560 -36895296 + B1F SINE Alu 1 143 -6 1 1233 696 96 16 65 chr11 84948694 84948817 -36895039 - B1_Mus1 SINE Alu -10 138 22 1 1233 553 225 84 15 chr11 84948968 84949099 -36894757 - B1_Mur1 SINE Alu -5 144 5 1 1233 267 31 0 0 chr11 84949178 84949210 -36894646 + (TGG)n Simple_repeat Simple_repeat 2 33 0 1 1233 690 141 47 0 chr11 84949210 84949338 -36894518 + B1_Mur2 SINE Alu 16 149 0 1 1233 320 333 149 6 chr11 84949398 84949579 -36894277 + B4 SINE B4 4 210 -82 1 1233 234 0 0 0 chr11 84949630 84949656 -36894200 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1233 189 121 0 0 chr11 84949656 84949689 -36894167 + (G)n Simple_repeat Simple_repeat 1 33 0 1 1233 551 264 36 0 chr11 84949725 84949865 -36893991 + B1_Mur2 SINE Alu 3 147 -2 1 1233 467 318 0 72 chr11 84950077 84950243 -36893613 + RSINE1 SINE B4 4 157 -8 1 1233 273 170 0 19 chr11 84950901 84950955 -36892901 + 4.5SRNA scRNA scRNA 34 86 -8 1 1233 790 39 0 0 chr11 84950908 84951011 -36892845 + B1_Mus2 SINE Alu 43 145 -2 1 1233 760 182 21 7 chr11 84951201 84951345 -36892511 + B1_Mus2 SINE Alu 2 147 0 1 1233 1131 43 0 7 chr11 84951672 84951812 -36892044 + B1_Mus1 SINE Alu 1 139 -9 1 1233 228 35 0 0 chr11 84951812 84951841 -36892015 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1233 267 31 0 0 chr11 84952096 84952128 -36891728 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1233 232 327 0 41 chr11 84953423 84953592 -36890264 + C-rich Low_complexity Low_complexity 6 167 0 1 1233 401 254 73 0 chr11 84954248 84954358 -36889498 - PB1D7 SINE Alu -1 119 2 1 1233 267 121 244 0 chr11 84954594 84954659 -36889197 - L1MB1 LINE L1 -271 5909 5829 1 1233 492 216 123 45 chr11 84954659 84954838 -36889018 + L1M3 LINE L1 5615 5807 -376 1 1233 219 252 111 0 chr11 84954867 84954961 -36888895 - B1F2 SINE Alu -11 109 1 1 1233 680 0 0 0 chr11 84955017 84955099 -36888757 + L1Md_A LINE L1 6501 6582 0 1 1233 210 118 0 0 chr11 84955122 84955156 -36888700 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1233 354 311 9 19 chr11 84955871 84955979 -36887877 + PB1D10 SINE Alu 3 109 -8 1 1233 365 279 17 67 chr11 84956785 84956904 -36886952 + PB1D9 SINE Alu 2 114 -6 1 1233 725 61 0 0 chr11 84956915 84957013 -36886843 - B1_Mus1 SINE Alu -49 99 2 1 1233 469 254 7 80 chr11 84957351 84957501 -36886355 + ID_B1 SINE B4 86 224 0 1 1233 571 211 207 0 chr11 84957554 84957713 -36886143 + B3A SINE B2 9 200 -16 1 1233 1182 68 0 0 chr11 84957713 84957859 -36885997 + B1_Mus2 SINE Alu 2 147 0 1 1233 468 251 192 6 chr11 84957859 84957871 -36885985 + B3 SINE B2 201 212 -4 1 1233 1016 38 0 0 chr11 84958069 84958200 -36885656 + B1_Mus1 SINE Alu 18 148 0 1 1233 210 37 0 0 chr11 84958200 84958227 -36885629 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1233 784 135 119 0 chr11 84958245 84958371 -36885485 + B1_Mur4 SINE Alu 1 141 -9 1 1233 252 0 0 0 chr11 84958371 84958399 -36885457 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1233 1435 57 0 17 chr11 84958537 84958716 -36885140 + B2_Mm2 SINE B2 1 176 -19 1 1233 357 62 0 0 chr11 84958869 84958917 -36884939 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1233 532 258 32 0 chr11 84958956 84959080 -36884776 - RSINE1 SINE B4 -36 129 2 1 1233 284 297 111 78 chr11 84959842 84959900 -36883956 - L2 LINE L2 -742 2677 2619 1 1233 619 269 85 29 chr11 84959900 84960172 -36883684 + B4A SINE B4 2 288 -4 1 1233 284 297 111 78 chr11 84960172 84960378 -36883478 - L2 LINE L2 -801 2618 2393 1 1233 198 0 0 0 chr11 84960378 84960400 -36883456 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1233 560 148 10 307 chr11 84960407 84960612 -36883244 - B1_Mur4 SINE Alu -6 144 1 1 1233 284 297 111 78 chr11 84960612 84960699 -36883157 - L2 LINE L2 -1029 2390 2306 1 1233 557 244 58 22 chr11 84960753 84960891 -36882965 - B1F SINE Alu 0 149 7 1 1233 639 215 33 46 chr11 84960929 84961080 -36882776 + B1_Mur2 SINE Alu 1 149 0 1 1233 475 291 13 32 chr11 84961475 84961617 -36882239 + RSINE1 SINE B4 4 143 -22 1 1233 288 0 0 0 chr11 84961617 84961649 -36882207 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1233 475 291 13 32 chr11 84961649 84961662 -36882194 + RSINE1 SINE B4 144 156 -9 1 1233 712 161 40 0 chr11 84961784 84961908 -36881948 - MTC LTR MaLR -71 350 222 1 1233 542 148 82 18 chr11 84961896 84962006 -36881850 + MTC LTR MaLR 305 421 0 1 1233 413 300 36 0 chr11 84962275 84962385 -36881471 - PB1D7 SINE Alu -6 114 1 1 1233 792 319 118 47 chr11 84962436 84962492 -36881364 - MLT1G1 LTR MaLR -2 577 513 1 1233 1191 41 14 0 chr11 84962492 84962637 -36881219 + B1_Mus2 SINE Alu 1 147 0 1 1233 792 319 118 47 chr11 84962637 84963028 -36880828 - MLT1G1 LTR MaLR -67 512 98 1 1233 1321 73 5 115 chr11 84963295 84963512 -36880344 + B2_Mm1t SINE B2 1 193 0 1 1233 663 49 392 0 chr11 84964180 84964282 -36879574 + B1_Mus1 SINE Alu 2 143 -5 1 1233 1280 73 6 0 chr11 84964285 84964462 -36879394 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1233 441 0 0 0 chr11 84964462 84964511 -36879345 + (GAA)n Simple_repeat Simple_repeat 1 49 0 1 1233 375 295 123 8 chr11 84964517 84964647 -36879209 + ID_B1 SINE B4 80 224 0 1 1233 1091 85 0 0 chr11 84964685 84964826 -36879030 + B1_Mus1 SINE Alu 2 142 -6 1 1233 669 58 0 0 chr11 84964828 84964914 -36878942 + (TAAA)n Simple_repeat Simple_repeat 3 88 0 1 1233 297 261 43 0 chr11 84964916 84965008 -36878848 + L1M2 LINE L1 3052 3147 -2996 1 1233 279 326 0 20 chr11 84964990 84965090 -36878766 - MurSatRep1 Unknown Unknown -1839 298 201 1 1233 1248 28 0 0 chr11 84965090 84965233 -36878623 + B1_Mus2 SINE Alu 1 143 -4 1 1233 213 227 90 15 chr11 84965263 84965330 -36878526 + B1_Mur1 SINE Alu 78 149 0 1 1233 24 32 0 0 chr11 84965399 84965430 -36878426 + AT_rich Low_complexity Low_complexity 1 31 0 1 1233 712 224 82 0 chr11 84965607 84965754 -36878102 + RSINE1 SINE B4 3 161 -4 1 1233 591 317 16 73 chr11 84965802 84966047 -36877809 + MLT1F LTR MaLR 214 444 -104 1 1233 225 227 0 0 chr11 84966106 84966150 -36877706 + L1_Rod LINE L1 4835 4878 -969 1 1233 459 0 0 0 chr11 84966154 84966205 -36877651 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1233 333 238 103 56 chr11 84966217 84966324 -36877532 + PB1D7 SINE Alu 1 112 -8 1 1233 851 246 66 10 chr11 84966351 84966548 -36877308 + ID_B1 SINE B4 1 208 -16 1 1233 1155 44 0 0 chr11 84966553 84966689 -36877167 + B1_Mus2 SINE Alu 2 137 -10 1 1233 216 0 0 0 chr11 84966689 84966713 -36877143 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1233 405 0 0 0 chr11 84966720 84966765 -36877091 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1233 276 103 0 0 chr11 84966803 84966842 -36877014 + L1ME1 LINE L1 5835 5873 -571 1 1233 583 281 0 21 chr11 84966844 84966974 -36876882 + ID_B1 SINE B4 82 211 -13 1 1233 209 57 29 0 chr11 84966974 84967009 -36876847 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1233 583 281 0 21 chr11 84967009 84967020 -36876836 + ID_B1 SINE B4 212 220 -4 1 1233 315 299 92 60 chr11 84967036 84967253 -36876603 + L1ME1 LINE L1 5904 6127 -52 1 1233 849 200 109 16 chr11 84967384 84967577 -36876279 + B3 SINE B2 1 211 -5 1 1233 767 226 28 17 chr11 84967593 84967773 -36876083 + ID_B1 SINE B4 34 215 -9 1 1233 510 17 0 0 chr11 84967775 84967834 -36876022 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1233 287 259 0 69 chr11 84967881 84967968 -36875888 - PB1 SINE Alu -8 119 39 1 1233 374 292 11 0 chr11 84968014 84968103 -36875753 + PB1D10 SINE Alu 28 117 0 1 1233 525 247 5 144 chr11 84968167 84968375 -36875481 - ID_B1 SINE B4 -38 186 8 1 1233 395 263 219 18 chr11 84968466 84968694 -36875162 - RMER15 LTR ERVL -2 573 300 1 1233 599 216 40 0 chr11 84968748 84968873 -36874983 - B1_Mus2 SINE Alu -17 130 1 1 1233 905 119 11 38 chr11 84968948 84969132 -36874724 + CT-rich Low_complexity Low_complexity 1 179 0 1 1233 395 316 94 0 chr11 84969187 84969304 -36874552 - ID_B1 SINE B4 -15 209 82 1 1233 1025 252 87 62 chr11 84969327 84969695 -36874161 - RMER15-int LTR ERVL -7 4992 4616 1 1233 1962 192 29 3 chr11 84969695 84970076 -36873780 + MTD LTR MaLR 5 395 -24 1 1233 1135 275 62 41 chr11 84970085 84970472 -36873384 - RMER15-int LTR ERVL -388 4611 4217 1 1233 473 269 16 56 chr11 84970711 84970837 -36873019 + RSINE1 SINE B4 3 123 -42 1 1233 2056 314 58 45 chr11 84970961 84971925 -36871931 - RMER15-int LTR ERVL -2969 2030 1054 1 1233 2475 275 100 47 chr11 84971941 84972865 -36870991 - RMER15-int LTR ERVL -4009 990 18 1 1233 481 351 62 18 chr11 84972878 84973151 -36870705 - RMER15 LTR ERVL -18 557 273 1 1233 252 0 0 0 chr11 84973447 84973475 -36870381 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1233 1191 34 7 7 chr11 84974211 84974357 -36869499 + B1_Mm SINE Alu 2 147 0 1 1233 1248 48 0 0 chr11 84974723 84974870 -36868986 - B1_Mus2 SINE Alu 0 147 1 1 1233 323 256 21 35 chr11 84974870 84975001 -36868855 - ID4 SINE ID -28 124 1 1 1233 1094 73 0 0 chr11 84975035 84975172 -36868684 - B1_Mm SINE Alu -10 137 1 1 1233 6181 92 1 14 chr11 84975254 84976108 -36867748 - L1Md_F2 LINE L1 0 6582 5740 1 1233 201 26 25 50 chr11 84976217 84976257 -36867599 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1233 1173 50 7 0 chr11 84976392 84976533 -36867323 + B1_Mus1 SINE Alu 2 143 -5 1 1233 863 84 0 0 chr11 84976578 84976685 -36867171 + U6 snRNA snRNA 1 107 0 1 1233 780 58 0 0 chr11 84976707 84976811 -36867045 - B2_Mm2 SINE B2 -43 152 49 1 1233 1610 41 0 15 chr11 84976811 84977008 -36866848 - B2_Mm2 SINE B2 0 195 2 1 1233 820 254 93 25 chr11 84977029 84977352 -36866504 - L1MA4 LINE L1 -365 5935 5591 1 1233 512 286 93 115 chr11 84977353 84977506 -36866350 - L1MD3 LINE L1 0 7995 7874 1 1233 1210 48 7 0 chr11 84977506 84977652 -36866204 - B1_Mus1 SINE Alu 0 148 2 1 1233 512 286 93 115 chr11 84977652 84978122 -36865734 - L1MD3 LINE L1 -122 7873 7386 1 1233 924 147 0 13 chr11 84978155 84978307 -36865549 - B1_Mur4 SINE Alu 0 150 1 1 1233 676 240 7 7 chr11 84978422 84978569 -36865287 - B1_Mur2 SINE Alu -1 148 2 1 1233 1133 52 7 0 chr11 84979277 84979430 -36864426 + B2_Mm2 SINE B2 1 154 -41 1 1233 294 50 0 0 chr11 84979431 84979471 -36864385 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1233 237 33 0 0 chr11 84979627 84979657 -36864199 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1233 180 67 0 32 chr11 84979836 84979867 -36863989 - L2a LINE L2 0 3426 3397 1 1233 1436 74 16 0 chr11 84979939 84980128 -36863728 - B2_Mm1t SINE B2 0 193 2 1 1233 270 0 0 0 chr11 84981742 84981772 -36862084 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1233 857 164 20 0 chr11 84981792 84981938 -36861918 - B1_Mur4 SINE Alu 0 150 2 1 1233 492 235 25 25 chr11 84981938 84982056 -36861800 - RSINE1 SINE B4 -45 120 3 1 1233 240 296 114 47 chr11 84982105 84982254 -36861602 - L4 LINE RTE -1163 866 708 1 1233 213 39 0 0 chr11 84982545 84982571 -36861285 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1233 521 261 67 67 chr11 84982571 84982764 -36861092 - ID_B1 SINE B4 -12 212 20 1 1233 274 310 34 34 chr11 84982829 84982946 -36860910 - PB1D10 SINE Alu 0 117 1 1 1233 287 155 97 14 chr11 84984886 84984958 -36858898 + ID4 SINE ID 2 79 -4 1 1233 711 124 0 0 chr11 84985271 84985376 -36858480 + B1_Mur4 SINE Alu 25 129 -21 1 1233 208 234 13 25 chr11 84985400 84985479 -36858377 + (CAAA)n Simple_repeat Simple_repeat 2 79 0 1 1233 1134 89 0 0 chr11 84985720 84985866 -36857990 + B1_Mus2 SINE Alu 2 147 0 1 1233 414 134 0 0 chr11 84985866 84985933 -36857923 + (A)n Simple_repeat Simple_repeat 1 67 0 1 1233 282 56 0 0 chr11 84986198 84986234 -36857622 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1233 676 260 13 0 chr11 84987057 84987207 -36856649 + RSINE1 SINE B4 12 163 -2 1 1233 372 123 0 0 chr11 84987208 84987281 -36856575 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1233 382 287 119 38 chr11 84987712 84988031 -36855825 - Charlie1a DNA MER1_type 0 1455 1111 1 1233 347 204 90 11 chr11 84988046 84988135 -36855721 - Charlie1a DNA MER1_type -449 1006 911 1 1233 231 340 20 20 chr11 84988179 84988281 -36855575 - B1_Mus2 SINE Alu -45 102 1 1 1233 396 278 17 61 chr11 84988306 84988421 -36855435 + B1_Mur2 SINE Alu 1 110 -39 1 1233 1183 61 0 12 chr11 84988526 84988538 -36855318 - B2_Mm2 SINE B2 -29 166 155 1 1233 1208 55 7 0 chr11 84988538 84988684 -36855172 - B1_Mus1 SINE Alu -1 147 1 1 1233 1183 61 0 12 chr11 84988684 84988838 -36855018 - B2_Mm2 SINE B2 -41 154 2 1 1233 243 270 0 26 chr11 84988855 84988931 -36854925 - L1MC2 LINE L1 -170 6174 6101 1 1233 23 78 0 0 chr11 84988935 84988986 -36854870 + AT_rich Low_complexity Low_complexity 1 51 0 1 1233 577 38 12 12 chr11 84989072 84989153 -36854703 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1233 297 0 0 0 chr11 84989153 84989185 -36854671 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1233 282 262 25 0 chr11 84989253 84989333 -36854523 - Lx8 LINE L1 -238 7235 7154 1 1233 558 259 0 0 chr11 84989335 84989451 -36854405 - PB1D10 SINE Alu -1 116 1 1 1233 306 269 75 30 chr11 84989456 84989621 -36854235 - L1MC2 LINE L1 -1679 6106 5932 1 1233 369 130 287 10 chr11 84989783 84989884 -36853972 + B1_Mus2 SINE Alu 2 130 -17 1 1233 4363 17 0 0 chr11 84989912 84990394 -36853462 - LTRIS_Mm LTR ERV1 0 482 1 1 1233 198 0 0 0 chr11 84990475 84990497 -36853359 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1233 257 286 34 23 chr11 84990533 84990666 -36853190 - MIR SINE MIR -46 222 81 1 1233 248 241 47 50 chr11 84990773 84990894 -36852962 - ID4_ SINE ID -28 124 6 1 1233 1080 66 15 0 chr11 84991026 84991163 -36852693 + B1_Mur4 SINE Alu 2 140 -10 1 1233 423 0 0 0 chr11 84991166 84991213 -36852643 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1233 483 221 24 39 chr11 84992244 84992371 -36851485 + B1F SINE Alu 8 132 -17 1 1233 488 278 16 23 chr11 84992387 84992516 -36851340 + RSINE1 SINE B4 3 130 -35 1 1233 651 189 290 0 chr11 84992567 84992736 -36851120 - ID_B1 SINE B4 -4 220 3 1 1233 208 26 103 0 chr11 84992740 84992779 -36851077 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 1 1233 1192 48 7 0 chr11 84992779 84992925 -36850931 - B1_Mm SINE Alu 0 147 1 1 1233 548 230 191 15 chr11 84993091 84993290 -36850566 - B4A SINE B4 -51 241 8 1 1233 853 252 39 5 chr11 84993321 84993524 -36850332 - B3 SINE B2 -6 210 1 1 1233 24 0 0 0 chr11 84993533 84993557 -36850299 + AT_rich Low_complexity Low_complexity 1 24 0 1 1233 376 176 59 0 chr11 84993782 84993850 -36850006 + ID4_ SINE ID 1 72 -11 1 1233 288 0 0 0 chr11 84993850 84993882 -36849974 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1233 627 213 88 7 chr11 84994709 84994846 -36849010 + B1_Mur1 SINE Alu 1 148 -1 1 1233 248 130 22 0 chr11 84995616 84995662 -36848194 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 1 1233 470 264 40 53 chr11 84995662 84995814 -36848042 - RSINE1 SINE B4 -8 157 8 1 1233 211 294 0 0 chr11 84995819 84995870 -36847986 - ID4 SINE ID 0 83 33 1 1233 315 83 50 0 chr11 84996041 84996101 -36847755 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1233 387 234 29 66 chr11 84996109 84996246 -36847610 - B3A SINE B2 -66 132 1 1 1233 491 132 205 26 chr11 84996259 84996376 -36847480 - B1_Mur4 SINE Alu 0 150 13 1 1233 232 188 222 12 chr11 84996925 84997006 -36846850 + PB1D10 SINE Alu 12 109 -8 1 1233 1680 36 0 0 chr11 84997328 84997521 -36846335 - B2_Mm1a SINE B2 0 193 1 1 1233 403 279 0 59 chr11 84997790 84997908 -36845948 - B3 SINE B2 -56 160 50 1 1233 233 274 13 52 chr11 84998239 84998316 -36845540 - PB1 SINE Alu -30 97 24 1 1233 649 273 16 11 chr11 84998322 84998507 -36845349 - ID_B1 SINE B4 -38 186 1 1 1233 212 163 91 23 chr11 84999000 84999044 -36844812 - B1_Mur1 SINE Alu -27 122 76 1 1233 473 305 40 7 chr11 84999201 84999353 -36844503 - RSINE1 SINE B4 -8 157 1 1 1233 360 236 189 0 chr11 84999465 84999592 -36844264 - L1MB2 LINE L1 -41 6130 5980 1 1233 271 244 39 0 chr11 84999644 84999722 -36844134 - ID_B1 SINE B4 -8 216 136 1 1233 415 243 15 0 chr11 84999777 84999913 -36843943 + (TA)n Simple_repeat Simple_repeat 1 138 0 1 1233 434 141 2 0 chr11 84999915 85000000 -36843856 - B2_Mm2 SINE B2 -7 186 100 1 1233 457 36 631 0 chr11 85000002 85000086 -36843770 + B1_Mus1 SINE Alu 3 139 -9 1 1233 234 0 0 0 chr11 85000086 85000112 -36843744 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 2 1233 1619 26 0 10 chr11 85000454 85000649 -36843207 - B2_Mm1a SINE B2 0 193 1 3 1233 302 283 131 9 chr11 85001919 85002026 -36841830 - PB1 SINE Alu -7 120 1 4 1233 346 214 87 10 chr11 85002434 85002538 -36841318 - PB1D7 SINE Alu -8 112 1 5 1233 24 0 0 0 chr11 85002538 85002562 -36841294 + AT_rich Low_complexity Low_complexity 1 24 0 6 1233 1214 14 14 7 chr11 85003439 85003585 -36840271 + B1_Mus2 SINE Alu 1 147 0 7 1233 180 0 0 0 chr11 85005467 85005487 -36838369 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1233 677 97 193 0 chr11 85005487 85005601 -36838255 - B1_Mur4 SINE Alu -13 137 2 9 1233 461 202 96 9 chr11 85005990 85006105 -36837751 - B1_Mur4 SINE Alu -17 133 9 1 1233 256 216 0 0 chr11 85006060 85006111 -36837745 - B4A SINE B4 -155 137 87 1 1233 897 177 0 0 chr11 85006127 85006274 -36837582 - B1_Mur4 SINE Alu -1 149 3 1 1233 918 262 115 36 chr11 85006314 85006671 -36837185 + MTD LTR MaLR 21 405 -14 1 1233 1616 37 5 10 chr11 85006883 85007076 -36836780 + B2_Mm1a SINE B2 2 193 0 1 1233 342 322 144 23 chr11 85007134 85007398 -36836458 + L1M5 LINE L1 4835 5130 -1016 1 1233 346 299 0 17 chr11 85008460 85008579 -36835277 + PB1D10 SINE Alu 1 117 0 1 1233 696 158 134 0 chr11 85008606 85008733 -36835123 + B1_Mur2 SINE Alu 5 148 -1 1 1233 299 326 0 0 chr11 85009080 85009166 -36834690 - PB1D10 SINE Alu -23 94 9 1 1233 294 51 0 0 chr11 85009512 85009551 -36834305 + U2 snRNA snRNA 1 39 -149 1 1233 436 204 50 20 chr11 85009928 85010028 -36833828 - PB1D7 SINE Alu 0 120 18 2 1233 383 289 116 0 chr11 85010217 85010338 -36833518 + ID_B1 SINE B4 84 218 -6 2 1233 233 184 61 0 chr11 85010294 85010343 -36833513 + PB1D10 SINE Alu 65 116 -1 2 1233 258 56 0 0 chr11 85010492 85010528 -36833328 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1233 387 105 0 0 chr11 85010986 85011043 -36832813 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1233 244 130 18 36 chr11 85011040 85011096 -36832760 + GA-rich Low_complexity Low_complexity 2 56 0 2 1233 714 229 18 36 chr11 85011756 85011946 -36831910 + B3A SINE B2 2 182 -34 2 1233 249 108 0 0 chr11 85011948 85011985 -36831871 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1233 1185 48 0 0 chr11 85012038 85012185 -36831671 + B1_Mus2 SINE Alu 1 147 0 2 1233 831 118 235 0 chr11 85012312 85012465 -36831391 - B2_Mm1a SINE B2 -3 190 2 2 1233 184 289 119 60 chr11 85012483 85012634 -36831222 + L2 LINE L2 2849 3008 -411 3 1233 394 176 0 26 chr11 85013035 85013111 -36830745 - B1F SINE Alu -4 145 72 3 1233 380 220 21 21 chr11 85013110 85013203 -36830653 - RSINE1 SINE B4 -43 122 30 3 1233 315 288 83 17 chr11 85013336 85013456 -36830400 - MER58B DNA MER1_type -19 322 195 3 1233 216 0 0 0 chr11 85013539 85013563 -36830293 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 3 1233 543 254 86 61 chr11 85014523 85014613 -36829243 - B3 SINE B2 -14 202 104 3 1233 397 78 0 45 chr11 85014613 85014680 -36829176 - L1Md_F2 LINE L1 -6 6576 6513 3 1233 399 21 0 0 chr11 85014681 85014729 -36829127 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1233 543 254 86 61 chr11 85014729 85014833 -36829023 - B3 SINE B2 -113 103 1 3 1233 22 0 0 0 chr11 85015252 85015274 -36828582 + AT_rich Low_complexity Low_complexity 1 22 0 3 1233 1163 75 0 0 chr11 85015278 85015425 -36828431 + B1_Mus1 SINE Alu 2 148 0 3 1233 499 218 14 57 chr11 85015600 85015741 -36828115 + B1_Mm SINE Alu 1 135 -12 4 1233 216 0 0 0 chr11 85015743 85015767 -36828089 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1233 23 0 0 0 chr11 85015822 85015845 -36828011 + AT_rich Low_complexity Low_complexity 1 23 0 4 1233 494 217 104 0 chr11 85015976 85016091 -36827765 - B3 SINE B2 -89 127 1 4 1233 366 284 58 90 chr11 85016122 85016277 -36827579 - RSINE1 SINE B4 -13 152 3 4 1233 1421 74 11 0 chr11 85016477 85016666 -36827190 - B2_Mm1t SINE B2 -1 192 2 4 1233 654 178 59 0 chr11 85017440 85017558 -36826298 - B1_Mus1 SINE Alu -2 146 22 4 1233 232 317 35 47 chr11 85018013 85018099 -36825757 + B1F2 SINE Alu 1 85 -64 4 1233 517 205 142 39 chr11 85018367 85018494 -36825362 - B1_Mur1 SINE Alu -9 140 1 4 1233 180 0 0 0 chr11 85018595 85018615 -36825241 + (TTA)n Simple_repeat Simple_repeat 1 20 0 4 1233 342 0 0 0 chr11 85018616 85018654 -36825202 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1233 659 157 104 0 chr11 85018663 85018778 -36825078 + B1_Mus1 SINE Alu 1 127 -21 5 1233 4105 218 109 132 chr11 85018800 85019081 -36824775 + RLTR22_Mur LTR ERVK 1 271 -1577 5 1233 1677 81 0 0 chr11 85019081 85019304 -36824552 - L1Md_F2 LINE L1 -12 6570 6348 5 1233 4105 218 109 132 chr11 85019304 85019478 -36824378 + RLTR22_Mur LTR ERVK 272 272 -1576 5 1233 1543 26 0 69 chr11 85019478 85019681 -36824175 - B2_Mm1a SINE B2 -3 190 2 5 1233 4105 218 109 132 chr11 85019681 85020824 -36823032 + RLTR22_Mur LTR ERVK 272 1520 -328 5 1233 1385 91 11 0 chr11 85020824 85021010 -36822846 + B2_Mm1t SINE B2 2 189 -4 5 1233 4105 218 109 132 chr11 85021010 85021300 -36822556 + RLTR22_Mur LTR ERVK 1521 1848 0 5 1233 242 318 81 9 chr11 85021454 85021565 -36822291 + B4A SINE B4 1 119 -173 5 1233 216 312 0 31 chr11 85021813 85021909 -36821947 + (CATA)n Simple_repeat Simple_repeat 4 96 0 5 1233 520 250 43 49 chr11 85021916 85022080 -36821776 + B3A SINE B2 20 182 -16 5 1233 548 209 50 7 chr11 85022354 85022494 -36821362 + MTD LTR MaLR 1 146 -273 5 1233 250 124 59 4 chr11 85022540 85022591 -36821265 + MTD LTR MaLR 329 411 -8 5 1233 1064 82 0 26 chr11 85022943 85023094 -36820762 - B1_Mus1 SINE Alu 0 148 2 6 1233 244 310 58 66 chr11 85023130 85023251 -36820605 + PB1D9 SINE Alu 1 120 0 6 1233 419 245 20 0 chr11 85023329 85023431 -36820425 + PB1D10 SINE Alu 12 115 -2 6 1233 1172 55 7 0 chr11 85024350 85024495 -36819361 + B1_Mus1 SINE Alu 2 147 -1 6 1233 237 310 0 35 chr11 85024611 85024712 -36819144 + ID4 SINE ID 14 109 -43 6 1233 220 234 0 0 chr11 85024838 85024885 -36818971 + B1F SINE Alu 80 126 -23 6 1233 269 108 360 105 chr11 85024937 85025051 -36818805 - B2_Mm2 SINE B2 -6 189 47 6 1233 304 122 53 13 chr11 85025045 85025120 -36818736 + B2_Mm2 SINE B2 116 193 -2 6 1233 210 143 0 45 chr11 85025120 85025164 -36818692 + A-rich Low_complexity Low_complexity 1 42 0 6 1233 387 309 88 17 chr11 85025253 85025434 -36818422 - L1M4 LINE L1 -751 5395 5202 6 1233 258 309 74 11 chr11 85025493 85025588 -36818268 + PB1D10 SINE Alu 15 115 -2 7 1233 240 222 31 31 chr11 85025704 85025769 -36818087 - B1_Mus2 SINE Alu -80 67 3 7 1233 265 231 0 0 chr11 85025718 85025770 -36818086 - ID_B1 SINE B4 -90 134 83 7 1233 373 261 68 40 chr11 85025800 85025948 -36817908 - L1M4 LINE L1 -1954 4192 4041 6 1233 216 196 0 0 chr11 85026001 85026047 -36817809 - PB1D10 SINE Alu -2 115 70 7 1233 1137 290 72 62 chr11 85026054 85026808 -36817048 - L1M4 LINE L1 -2114 4032 3272 6 1233 1080 57 50 0 chr11 85027239 85027379 -36816477 + B1_Mus2 SINE Alu 1 147 0 7 1233 29 0 0 0 chr11 85027379 85027408 -36816448 + AT_rich Low_complexity Low_complexity 1 29 0 7 1233 270 188 21 0 chr11 85027416 85027464 -36816392 + B1_Mus2 SINE Alu 2 50 -97 7 1233 441 0 0 0 chr11 85027508 85027557 -36816299 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1233 284 315 107 77 chr11 85028960 85029221 -36814635 + B4 SINE B4 2 270 -22 7 1233 656 202 207 6 chr11 85029514 85029688 -36814168 - B3 SINE B2 -6 210 2 7 1233 269 203 0 0 chr11 85029689 85029748 -36814108 + L1MB4 LINE L1 6112 6170 -10 8 1233 310 179 295 0 chr11 85029807 85029885 -36813971 + ID_B1 SINE B4 104 204 -20 8 1233 21 36 0 0 chr11 85032064 85032092 -36811764 + AT_rich Low_complexity Low_complexity 1 28 0 8 1233 414 175 163 70 chr11 85032101 85032230 -36811626 - B1_Mur4 SINE Alu -9 141 1 8 1233 554 256 15 8 chr11 85032652 85032786 -36811070 + RSINE1 SINE B4 2 136 -29 8 1233 939 182 58 24 chr11 85032847 85033055 -36810801 + B3 SINE B2 2 216 0 8 1233 216 0 0 0 chr11 85033123 85033147 -36810709 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 1233 1268 57 57 6 chr11 85033363 85033534 -36810322 + B2_Mm2 SINE B2 4 184 -11 8 1233 207 0 0 0 chr11 85033534 85033557 -36810299 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1233 249 57 0 0 chr11 85033786 85033821 -36810035 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1233 265 241 35 0 chr11 85033845 85033903 -36809953 + B4A SINE B4 13 72 -220 9 1233 218 262 124 56 chr11 85034600 85034689 -36809167 - RSINE1 SINE B4 -69 96 2 9 1233 21 36 0 0 chr11 85034689 85034717 -36809139 + AT_rich Low_complexity Low_complexity 1 28 0 9 1233 721 248 14 38 chr11 85034717 85034945 -36808911 + B4 SINE B4 2 224 0 9 1233 1119 70 0 0 chr11 85034964 85035107 -36808749 + B1_Mus1 SINE Alu 5 147 -1 9 1233 596 276 7 20 chr11 85035310 85035458 -36808398 + B1F SINE Alu 4 149 0 9 1233 1723 119 3 123 chr11 85036141 85036446 -36807410 + ORR1A4 LTR MaLR 1 277 -52 9 1233 1243 34 0 0 chr11 85036446 85036592 -36807264 + B1_Mm SINE Alu 2 147 0 9 1233 1723 119 3 123 chr11 85036592 85036660 -36807196 + ORR1A4 LTR MaLR 278 329 0 9 1233 1682 21 0 15 chr11 85037070 85037265 -36806591 + B2_Mm1t SINE B2 2 193 0 9 1233 243 211 174 22 chr11 85037378 85037470 -36806386 - MT2C_Mm LTR ERVL -268 207 102 9 1233 476 207 11 0 chr11 85038034 85038121 -36805735 + B3 SINE B2 43 130 -86 1 1233 308 233 0 0 chr11 85038375 85038435 -36805421 - ID_B1 SINE B4 0 224 165 1 1233 279 264 30 90 chr11 85038435 85038473 -36805383 - PB1D7 SINE Alu 0 118 27 1 1233 1594 249 59 45 chr11 85038643 85039224 -36804632 + Lx6 LINE L1 6455 7375 -85 1 1233 366 23 0 0 chr11 85039765 85039808 -36804048 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1233 691 234 13 31 chr11 85039818 85039977 -36803879 - B3A SINE B2 -42 156 1 1 1233 474 304 69 61 chr11 85040010 85040255 -36803601 - Lx8 LINE L1 -28 7445 7199 1 1233 262 254 0 0 chr11 85040262 85040325 -36803531 - Lx7 LINE L1 -590 7106 7044 1 1233 332 235 29 0 chr11 85040392 85040460 -36803396 - Lx8 LINE L1 -539 6934 6865 1 1233 530 172 100 10 chr11 85040624 85040724 -36803132 - PB1D9 SINE Alu -11 109 1 1 1233 213 266 164 75 chr11 85040775 85040797 -36803059 + ID_B1 SINE B4 78 213 -11 1 1233 386 218 161 6 chr11 85040797 85040897 -36802959 + B1_Mur2 SINE Alu 25 133 -16 1 1233 294 299 64 27 chr11 85040897 85041007 -36802849 + PB1D10 SINE Alu 1 114 -3 1 1233 276 257 215 28 chr11 85041026 85041170 -36802686 + B4A SINE B4 1 171 -121 1 1233 297 307 160 10 chr11 85041306 85041327 -36802529 + B4 SINE B4 65 116 -176 1 1233 472 186 11 0 chr11 85041327 85041435 -36802421 + B1_Mus2 SINE Alu 5 120 0 1 1233 297 307 160 10 chr11 85041435 85041500 -36802356 + B4 SINE B4 117 287 -5 1 1233 180 200 0 0 chr11 85041714 85041754 -36802102 + A-rich Low_complexity Low_complexity 1 40 0 1 1233 450 315 54 12 chr11 85041792 85041959 -36801897 + B4A SINE B4 2 175 -117 1 1233 354 301 20 95 chr11 85042152 85042217 -36801639 + ID_B1 SINE B4 84 143 -81 1 1233 1383 100 16 0 chr11 85042217 85042407 -36801449 - B2_Mm2 SINE B2 -1 194 2 1 1233 354 301 20 95 chr11 85042407 85042488 -36801368 + ID_B1 SINE B4 144 219 -5 1 1233 1243 41 0 0 chr11 85042588 85042735 -36801121 + B1_Mus2 SINE Alu 1 147 0 1 1233 228 296 9 84 chr11 85042854 85042961 -36800895 - B1F1 SINE Alu -44 105 7 1 1233 580 269 15 0 chr11 85042987 85043117 -36800739 + RSINE1 SINE B4 5 136 -29 1 1233 338 136 0 29 chr11 85043134 85043202 -36800654 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1 1233 274 280 246 8 chr11 85043400 85043526 -36800330 + B3A SINE B2 1 156 -42 1 1233 1272 71 6 0 chr11 85043574 85043757 -36800099 + B2_Mm1a SINE B2 10 193 0 1 1233 284 305 49 0 chr11 85043772 85043854 -36800002 + RSINE1 SINE B4 4 89 -76 1 1233 1079 82 7 20 chr11 85043857 85044007 -36799849 + B1_Mus1 SINE Alu 1 148 0 1 1233 918 122 256 0 chr11 85044110 85044290 -36799566 - URR1A DNA MER1_type 0 226 1 1 1233 575 242 171 37 chr11 85044408 85044653 -36799203 + B4A SINE B4 1 278 -14 1 1233 898 90 113 0 chr11 85044717 85044850 -36799006 + B1_Mus1 SINE Alu 1 148 0 1 1233 774 126 8 8 chr11 85044862 85044982 -36798874 + PB1D9 SINE Alu 1 120 0 1 1233 266 242 0 31 chr11 85045087 85045151 -36798705 - B4 SINE B4 -27 265 204 1 1233 1233 41 0 0 chr11 85045189 85045334 -36798522 + B1_Mus2 SINE Alu 3 147 0 1 1233 1085 74 18 6 chr11 85045349 85045513 -36798343 + B2_Mm2 SINE B2 27 192 -3 1 1233 455 178 21 72 chr11 85045513 85045610 -36798246 - B1_Mur4 SINE Alu -6 144 53 1 1233 439 182 134 18 chr11 85045620 85045732 -36798124 + B1_Mur1 SINE Alu 22 146 -3 1 1233 1291 81 35 0 chr11 85045750 85045922 -36797934 + B2_Mm1t SINE B2 2 179 -14 1 1233 374 93 308 77 chr11 85045987 85046104 -36797752 + B2_Mm2 SINE B2 47 190 -5 1 1233 324 247 41 0 chr11 85046105 85046178 -36797678 + ID4_ SINE ID 5 80 -3 1 1233 1152 108 42 36 chr11 85046197 85046390 -36797466 + B2_Mm2 SINE B2 2 195 0 1 1233 345 204 126 0 chr11 85048937 85049040 -36794816 + PB1D7 SINE Alu 5 120 0 1 1233 561 168 0 0 chr11 85049051 85049152 -36794704 + B1_Mur3 SINE Alu 5 105 -44 1 1233 686 93 9 9 chr11 85049219 85049327 -36794529 - B2_Mm1t SINE B2 -85 108 1 1 1233 928 34 0 0 chr11 85049351 85049470 -36794386 - B1_Mm SINE Alu 0 147 29 1 1233 558 230 7 28 chr11 85049482 85049625 -36794231 - B1_Mur3 SINE Alu 0 149 10 1 1233 275 247 86 0 chr11 85049553 85049634 -36794222 - B4A SINE B4 -125 167 80 1 1233 185 0 40 0 chr11 85049932 85049957 -36793899 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 1 1233 217 259 80 34 chr11 85049957 85050045 -36793811 - B1F1 SINE Alu -10 139 48 1 1233 295 327 25 50 chr11 85050151 85050270 -36793586 - PB1D10 SINE Alu -1 116 1 1 1233 709 165 70 28 chr11 85050343 85050486 -36793370 + B1_Mur4 SINE Alu 2 150 0 1 1233 1764 141 89 6 chr11 85051024 85051373 -36792483 - RMER4B LTR ERVK -191 394 17 1 1233 242 248 35 122 chr11 85051568 85051683 -36792173 + PB1D10 SINE Alu 12 116 -1 1 1233 299 298 9 9 chr11 85051842 85051957 -36791899 - PB1D10 SINE Alu -2 115 1 1 1233 318 270 95 0 chr11 85052350 85052424 -36791432 + ID SINE ID 2 82 -142 1 1233 2023 137 0 49 chr11 85052476 85052845 -36791011 + RLTR11B LTR ERVK 1 351 -102 1 1233 893 83 30 0 chr11 85052848 85052981 -36790875 + B1_Mm SINE Alu 11 147 0 1 1233 740 51 0 99 chr11 85053007 85053138 -36790718 + RLTR11B LTR ERVK 336 453 0 1 1233 283 167 0 18 chr11 85053202 85053257 -36790599 - B3A SINE B2 -71 127 74 1 1233 326 127 15 60 chr11 85053317 85053384 -36790472 - B3 SINE B2 -152 64 1 1 1233 583 164 121 0 chr11 85053712 85053828 -36790028 + RLTR11B LTR ERVK 1 130 -323 1 1233 2604 141 43 22 chr11 85053830 85054323 -36789533 + RLTR11A2 LTR ERVK 25 527 0 1 1233 269 180 23 0 chr11 85054345 85054402 -36789454 - L1MB4 LINE L1 -93 6090 6031 1 1233 744 272 43 102 chr11 85054609 85054861 -36788995 - B4 SINE B4 -6 286 56 1 1233 2030 184 96 32 chr11 85054861 85055021 -36788835 + RMER16 LTR ERVK 1 171 -362 1 1233 1037 68 6 82 chr11 85055021 85055180 -36788676 + B1_Mus2 SINE Alu 1 147 0 1 1233 2030 184 96 32 chr11 85055180 85055520 -36788336 + RMER16 LTR ERVK 172 533 0 1 1233 744 272 43 102 chr11 85055520 85055570 -36788286 - B4 SINE B4 -237 55 2 1 1233 1015 223 28 162 chr11 85055572 85055834 -36788022 - L1MB4 LINE L1 -351 5823 5607 1 1233 1114 95 0 0 chr11 85055834 85055982 -36787874 - B1_Mus1 SINE Alu 0 148 1 1 1233 1015 223 28 162 chr11 85055982 85056152 -36787704 - L1MB4 LINE L1 -568 5606 5449 1 1233 415 266 110 93 chr11 85056158 85056198 -36787658 + MT2B2 LTR ERVL 128 258 -326 1 1233 644 175 0 0 chr11 85056198 85056301 -36787555 + B1_Mus2 SINE Alu 1 103 -44 1 1233 438 282 6 139 chr11 85056301 85056363 -36787493 + ID_B1 SINE B4 82 224 0 1 1233 415 266 110 93 chr11 85056363 85056394 -36787462 + MT2B2 LTR ERVL 259 367 -217 1 1233 776 166 104 2 chr11 85056960 85057136 -36786720 + MTC LTR MaLR 193 421 0 1 1233 1816 157 113 11 chr11 85057135 85057489 -36786367 + MTC-int LTR MaLR 2 391 -867 1 1233 3403 35 8 0 chr11 85057489 85057886 -36785970 - MTB LTR MaLR 0 400 1 1 1233 513 138 103 8 chr11 85057893 85058010 -36785846 + MTC-int LTR MaLR 976 1103 -155 1 1233 2793 94 5 14 chr11 85058019 85058438 -36785418 - BGLII_Mus LTR ERVK 0 422 8 1 1233 274 188 37 119 chr11 85058439 85058548 -36785308 + MTC-int LTR MaLR 999 1098 0 1 1233 1749 159 105 22 chr11 85058550 85058865 -36784991 + MTC LTR MaLR 3 343 -78 1 1233 253 345 49 37 chr11 85059548 85059599 -36784257 + L2a LINE L2 3179 3229 -197 1 1233 1075 68 13 33 chr11 85059599 85059752 -36784104 - B1_Mur4 SINE Alu 0 150 1 1 1233 253 345 49 37 chr11 85059752 85059787 -36784069 + L2a LINE L2 3230 3260 -166 1 1233 231 61 0 0 chr11 85059787 85059820 -36784036 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 1233 381 203 0 39 chr11 85059822 85059899 -36783957 - ID4_ SINE ID -6 77 4 1 1233 253 345 49 37 chr11 85059899 85060052 -36783804 + L2a LINE L2 3261 3421 -5 1 1233 1163 82 0 0 chr11 85060273 85060420 -36783436 + B1_Mm SINE Alu 1 147 0 1 1233 1272 97 17 0 chr11 85060451 85060626 -36783230 - B2_Mm1t SINE B2 -14 179 2 1 1233 426 155 598 8 chr11 85061028 85061160 -36782696 - B3 SINE B2 -6 210 1 1 1233 182 119 48 48 chr11 85061214 85061276 -36782580 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 1 1233 703 316 0 53 chr11 85061276 85061503 -36782353 - B3 SINE B2 -1 215 1 1 1233 712 203 192 31 chr11 85061549 85061742 -36782114 + B4A SINE B4 10 233 -59 1 1233 1884 98 7 71 chr11 85061799 85062107 -36781749 + ORR1A3 LTR MaLR 1 288 -38 1 1233 303 316 101 75 chr11 85062199 85062387 -36781469 + HAL1 LINE L1 530 722 -1785 1 1233 182 105 26 0 chr11 85062484 85062522 -36781334 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1233 636 174 8 42 chr11 85062594 85062714 -36781142 + MTC LTR MaLR 5 120 -301 1 1233 316 253 0 0 chr11 85062738 85062813 -36781043 - PB1D9 SINE Alu 0 120 46 1 1233 1779 143 64 3 chr11 85062832 85063127 -36780729 + MTC LTR MaLR 109 421 0 1 1233 230 268 0 0 chr11 85063270 85063326 -36780530 - ID SINE ID -166 58 3 1 1233 436 285 79 14 chr11 85063450 85063589 -36780267 - B1_Mur1 SINE Alu 0 149 2 1 1233 1205 68 0 0 chr11 85063617 85063764 -36780092 + B1_Mus2 SINE Alu 1 147 0 1 1233 335 102 51 0 chr11 85063764 85063823 -36780033 + A-rich Low_complexity Low_complexity 2 63 0 1 1233 648 335 17 11 chr11 85063823 85064001 -36779855 + ID_B1 SINE B4 7 185 -39 1 1233 780 32 0 0 chr11 85064440 85064535 -36779321 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 1 1233 779 84 0 18 chr11 85064544 85064653 -36779203 + B1_Mus1 SINE Alu 1 107 -41 1 1233 341 343 130 0 chr11 85064646 85064754 -36779102 + ID_B1 SINE B4 84 205 -19 1 1233 397 302 29 73 chr11 85064653 85064674 -36779182 + MT2B LTR ERVL 182 287 -314 1 1233 246 272 174 14 chr11 85064666 85064804 -36779052 - YREP_Mm Unknown Unknown -1518 294 135 1 1233 319 266 168 8 chr11 85064754 85064770 -36779086 + B1F2 SINE Alu 3 146 -3 1 1233 295 237 0 0 chr11 85064816 85064875 -36778981 + B1F1 SINE Alu 1 59 -90 1 1233 1281 88 22 6 chr11 85064880 85065063 -36778793 + B2_Mm1a SINE B2 1 186 -7 1 1233 701 226 63 16 chr11 85065096 85065285 -36778571 + B3A SINE B2 1 198 0 1 1233 790 101 207 65 chr11 85065332 85065354 -36778502 - B2_Mm1t SINE B2 0 193 168 1 1233 1291 27 0 0 chr11 85065354 85065500 -36778356 - B1_Mm SINE Alu 0 147 2 1 1233 790 101 207 65 chr11 85065500 85065646 -36778210 - B2_Mm1t SINE B2 -26 167 1 1 1234 23 0 0 0 chr11 85065742 85065765 -36778091 + AT_rich Low_complexity Low_complexity 1 23 0 2 1234 810 81 195 0 chr11 85065842 85065965 -36777891 - B1_Mus2 SINE Alu 0 147 1 2 1234 644 284 10 38 chr11 85066053 85066262 -36777594 - B3 SINE B2 -13 203 1 2 1234 357 282 55 97 chr11 85066265 85066276 -36777580 - B4A SINE B4 -56 236 157 2 1234 916 158 7 0 chr11 85066276 85066422 -36777434 - B1_Mur3 SINE Alu -1 148 2 2 1234 504 281 8 0 chr11 85067496 85067617 -36776239 + ID_B1 SINE B4 95 216 -8 2 1234 602 151 0 0 chr11 85067666 85067759 -36776097 + B1_Mur3 SINE Alu 55 147 -2 2 1234 336 51 16 33 chr11 85067775 85067836 -36776020 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 1234 44 56 0 0 chr11 85067846 85067918 -36775938 + AT_rich Low_complexity Low_complexity 1 72 0 2 1234 1246 86 41 51 chr11 85068171 85068367 -36775489 + B2_Mm2 SINE B2 2 195 0 2 1234 235 303 30 0 chr11 85068367 85068433 -36775423 - ID4 SINE ID -11 72 5 2 1234 542 260 61 14 chr11 85068591 85068703 -36775153 + RSINE1 SINE B4 5 123 -42 2 1234 297 0 0 0 chr11 85068703 85068736 -36775120 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1234 542 260 61 14 chr11 85068736 85068771 -36775085 + RSINE1 SINE B4 124 158 -7 2 1234 303 28 0 0 chr11 85069476 85069512 -36774344 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2 1234 767 180 14 21 chr11 85069512 85069654 -36774202 - B1_Mus2 SINE Alu -6 141 1 2 1234 1270 34 0 0 chr11 85070086 85070232 -36773624 + B1_Mus2 SINE Alu 2 147 0 2 1234 864 304 58 21 chr11 85070561 85071079 -36772777 + L1M2 LINE L1 2756 3292 -2851 2 1234 952 138 14 0 chr11 85071080 85071225 -36772631 + B1_Mus2 SINE Alu 1 147 0 2 1234 24 53 0 0 chr11 85071288 85071326 -36772530 + AT_rich Low_complexity Low_complexity 1 38 0 2 1234 783 111 0 0 chr11 85071333 85071441 -36772415 - B2_Mm2 SINE B2 -87 108 1 2 1234 819 164 16 0 chr11 85071488 85071616 -36772240 - B3 SINE B2 -86 130 1 2 1234 535 302 0 48 chr11 85071622 85071768 -36772088 - B1F SINE Alu -1 148 10 2 1234 1625 213 58 17 chr11 85071944 85072288 -36771568 - MTD LTR MaLR -52 367 10 2 1234 533 274 134 32 chr11 85072604 85072887 -36770969 + MLT1C LTR MaLR 33 344 -123 2 1234 763 197 7 39 chr11 85073200 85073211 -36770645 - B1_Mus1 SINE Alu 0 148 141 2 1234 234 0 0 0 chr11 85073211 85073237 -36770619 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1234 763 197 7 39 chr11 85073237 85073378 -36770478 - B1_Mus1 SINE Alu -8 140 1 2 1234 472 169 11 33 chr11 85073595 85073687 -36770169 - RSINE1 SINE B4 -68 97 8 2 1234 384 262 61 41 chr11 85073734 85073881 -36769975 - RSINE1 SINE B4 -14 151 2 2 1234 528 276 29 22 chr11 85074151 85074178 -36769678 - B4 SINE B4 -5 287 261 2 1234 270 0 0 0 chr11 85074178 85074208 -36769648 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1234 528 276 29 22 chr11 85074208 85074317 -36769539 - B4 SINE B4 -32 260 151 2 1234 1172 254 103 17 chr11 85074369 85074718 -36769138 - MTEa LTR MaLR 0 379 1 2 1234 488 242 11 0 chr11 85075161 85075256 -36768600 + ID_B1 SINE B4 83 178 -46 2 1234 207 0 0 0 chr11 85075598 85075621 -36768235 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1234 1168 49 0 14 chr11 85075621 85075758 -36768098 - B1_Mus2 SINE Alu -11 136 1 2 1234 288 0 0 0 chr11 85075781 85075813 -36768043 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2 1234 1146 62 7 0 chr11 85075813 85075959 -36767897 - B2_Mm1a SINE B2 -43 150 4 2 1234 1987 179 6 31 chr11 85075961 85076318 -36767538 - MTC LTR MaLR -73 348 1 2 1234 396 0 0 0 chr11 85076415 85076459 -36767397 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 2 1234 251 73 49 0 chr11 85076465 85076506 -36767350 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 2 1234 1216 74 0 0 chr11 85076506 85076654 -36767202 - B1_Mus1 SINE Alu 0 148 1 2 1234 404 306 27 9 chr11 85077060 85077172 -36766684 - RSINE1 SINE B4 -46 119 6 2 1234 209 128 26 0 chr11 85077176 85077215 -36766641 + T-rich Low_complexity Low_complexity 6 45 0 2 1234 300 144 48 44 chr11 85077222 85077311 -36766545 - B1F SINE Alu 0 149 34 2 1234 216 186 133 17 chr11 85077311 85077371 -36766485 - B3 SINE B2 -148 68 2 2 1234 382 314 9 0 chr11 85077585 85077655 -36766201 + B1_Mur1 SINE Alu 3 73 -76 2 1234 1170 104 64 0 chr11 85077655 85077828 -36766028 + B2_Mm2 SINE B2 2 185 -10 2 1234 382 303 105 8 chr11 85077828 85077890 -36765966 + B1_Mur1 SINE Alu 74 147 -2 2 1234 22 0 0 0 chr11 85078027 85078049 -36765807 + AT_rich Low_complexity Low_complexity 1 22 0 2 1234 748 103 43 0 chr11 85078598 85078714 -36765142 - B1_Mus2 SINE Alu 0 147 27 2 1234 1089 83 14 0 chr11 85078715 85078860 -36764996 - B1_Mus1 SINE Alu 0 148 2 2 1234 1308 59 0 0 chr11 85079093 85079263 -36764593 + (TG)n Simple_repeat Simple_repeat 1 170 0 2 1234 472 259 93 115 chr11 85079333 85079516 -36764340 + B3A SINE B2 15 193 0 2 1234 258 32 0 0 chr11 85079609 85079640 -36764216 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1234 516 32 0 0 chr11 85079640 85079701 -36764155 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1234 922 156 0 7 chr11 85080247 85080389 -36763467 - B1_Mus2 SINE Alu -2 145 5 2 1234 225 0 0 0 chr11 85080613 85080638 -36763218 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1234 1195 48 7 0 chr11 85080750 85080896 -36762960 + B1_Mus2 SINE Alu 1 147 0 2 1234 222 174 0 0 chr11 85081360 85081406 -36762450 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 2 1234 486 289 39 13 chr11 85081409 85081563 -36762293 - RSINE1 SINE B4 -5 160 3 2 1234 230 0 0 32 chr11 85081575 85081606 -36762250 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1234 3787 189 108 21 chr11 85081735 85082577 -36761279 + RMER19B LTR ERVK 20 886 -16 2 1234 1128 101 65 6 chr11 85082577 85082747 -36761109 + B2_Mm2 SINE B2 2 181 -14 2 1234 604 108 0 0 chr11 85082747 85082830 -36761026 - ID2 SINE ID 0 83 1 2 1234 254 184 133 0 chr11 85083161 85083252 -36760604 - L1M4c LINE L1 -5240 1768 1627 2 1234 387 60 0 0 chr11 85083265 85083315 -36760541 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1234 583 232 84 26 chr11 85083323 85083478 -36760378 - B3 SINE B2 -48 168 5 2 1234 236 271 114 34 chr11 85083517 85083666 -36760190 - L1M4c LINE L1 -5326 1578 1418 2 1234 1577 58 0 0 chr11 85083778 85083969 -36759887 - B2_Mm1t SINE B2 -2 191 1 2 1234 406 31 0 44 chr11 85083972 85084040 -36759816 - B2_Mm1a SINE B2 -2 191 127 2 1234 1468 45 0 6 chr11 85084074 85084252 -36759604 - B2_Mm2 SINE B2 -14 181 5 2 1234 601 231 73 56 chr11 85084263 85084442 -36759414 - B3 SINE B2 0 216 35 2 1234 1168 68 0 0 chr11 85084569 85084717 -36759139 - B1_Mus1 SINE Alu 0 148 1 2 1234 774 180 35 21 chr11 85084747 85084889 -36758967 - B1_Mur3 SINE Alu -1 148 5 2 1234 329 136 0 15 chr11 85085551 85085618 -36758238 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1234 668 275 22 60 chr11 85085765 85085997 -36757859 - ID_B1 SINE B4 0 224 2 2 1234 313 219 109 0 chr11 85086018 85086082 -36757774 - ID4_ SINE ID -10 73 3 2 1234 246 292 0 30 chr11 85086136 85086203 -36757653 - PB1D10 SINE Alu -26 91 27 2 1234 211 347 52 21 chr11 85086203 85086233 -36757623 - ID_B1 SINE B4 -52 172 73 2 1234 308 162 147 0 chr11 85086251 85086319 -36757537 - ID4 SINE ID -5 78 1 2 1234 869 149 0 51 chr11 85086440 85086596 -36757260 - B1_Mur3 SINE Alu 0 149 2 2 1234 367 299 56 0 chr11 85086775 85086882 -36756974 - PB1D10 SINE Alu 0 117 5 2 1234 1294 163 34 0 chr11 85086923 85087132 -36756724 - B3 SINE B2 0 216 1 2 1234 672 13 0 0 chr11 85088058 85088135 -36755721 + (GAA)n Simple_repeat Simple_repeat 3 79 0 2 1234 233 125 60 40 chr11 85088172 85088222 -36755634 + CT-rich Low_complexity Low_complexity 6 56 0 2 1234 785 210 107 56 chr11 85088238 85088435 -36755421 - B3 SINE B2 -9 207 1 2 1234 1317 131 14 24 chr11 85088470 85088682 -36755174 - B3 SINE B2 -6 210 1 2 1234 355 259 75 75 chr11 85089074 85089233 -36754623 - B4A SINE B4 -120 172 14 2 1234 823 84 0 0 chr11 85089278 85089385 -36754471 + B2_Mm2 SINE B2 3 109 -86 2 1234 926 70 0 66 chr11 85089353 85089490 -36754366 + B1_Mm SINE Alu 8 135 -12 2 1234 307 243 176 46 chr11 85089527 85089635 -36754221 - B1F2 SINE Alu -22 126 5 2 1234 237 342 25 0 chr11 85090170 85090249 -36753607 + ID4_ SINE ID 2 82 -1 2 1234 232 120 0 39 chr11 85090255 85090307 -36753549 + GA-rich Low_complexity Low_complexity 1 50 0 2 1234 312 315 44 106 chr11 85090320 85090480 -36753376 + ID_B1 SINE B4 72 221 -3 2 1234 349 230 110 137 chr11 85090338 85090484 -36753372 + B1F SINE Alu 6 147 -2 2 1234 448 279 39 0 chr11 85090495 85090599 -36753257 + PB1D10 SINE Alu 1 108 -9 2 1234 505 260 67 51 chr11 85090951 85091129 -36752727 + B3A SINE B2 2 182 -16 2 1234 392 171 0 50 chr11 85091509 85091589 -36752267 - ID4_ SINE ID -3 80 5 2 1234 653 314 6 6 chr11 85091812 85091985 -36751871 - MER20 DNA MER1_type -46 173 1 2 1234 360 197 132 0 chr11 85092004 85092080 -36751776 + B1_Mus1 SINE Alu 1 86 -62 2 1234 423 0 0 0 chr11 85092081 85092128 -36751728 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1234 317 341 0 0 chr11 85092148 85092230 -36751626 + ID4 SINE ID 2 83 0 2 1234 687 143 14 87 chr11 85092322 85092460 -36751396 + B1_Mur4 SINE Alu 4 131 -19 2 1234 378 0 0 0 chr11 85092503 85092545 -36751311 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 3 1234 291 287 30 83 chr11 85093166 85093299 -36750557 + MIRm SINE MIR 150 275 -1 3 1234 375 266 21 0 chr11 85093208 85093302 -36750554 + L2a LINE L2 3331 3426 0 3 1234 387 320 18 15 chr11 85093553 85093683 -36750173 + MLT1J LTR MaLR 57 180 -332 3 1234 252 301 11 108 chr11 85093747 85093840 -36750016 + MTE2b LTR MaLR 4 87 -292 3 1234 731 259 195 18 chr11 85093845 85094117 -36749739 + MTE2b LTR MaLR 60 379 0 3 1234 227 283 100 0 chr11 85094347 85094407 -36749449 + ID_B1 SINE B4 99 164 -60 3 1234 691 82 36 0 chr11 85094407 85094517 -36749339 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 3 1234 464 192 108 59 chr11 85094517 85094619 -36749237 + PB1D7 SINE Alu 21 125 -2 3 1234 294 29 0 0 chr11 85094896 85094931 -36748925 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1234 549 174 0 0 chr11 85095487 85095579 -36748277 + PB1D7 SINE Alu 22 113 -7 3 1234 342 0 0 0 chr11 85095729 85095767 -36748089 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1234 557 252 16 0 chr11 85095781 85095904 -36747952 - ID_B1 SINE B4 -2 222 98 3 1234 281 277 43 138 chr11 85095782 85095920 -36747936 - PB1 SINE Alu -2 125 1 3 1234 350 213 72 31 chr11 85096185 85096282 -36747574 + ID_B1 SINE B4 79 179 -45 3 1234 254 203 0 68 chr11 85096291 85096317 -36747539 + A-rich Low_complexity Low_complexity 1 26 0 3 1234 1197 61 0 0 chr11 85096317 85096465 -36747391 + B1_Mus1 SINE Alu 1 148 0 3 1234 254 203 0 68 chr11 85096465 85096512 -36747344 + A-rich Low_complexity Low_complexity 27 68 0 3 1234 1711 26 0 0 chr11 85096552 85096745 -36747111 + B2_Mm1a SINE B2 1 193 0 3 1234 625 245 49 0 chr11 85096810 85096953 -36746903 - B3A SINE B2 -36 162 13 3 1234 384 88 0 0 chr11 85096984 85097041 -36746815 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1234 930 248 54 58 chr11 85097041 85097302 -36746554 - B4A SINE B4 -22 270 11 3 1234 891 156 0 58 chr11 85097337 85097493 -36746363 - B1_Mus1 SINE Alu -1 147 1 3 1234 790 247 28 0 chr11 85097517 85097699 -36746157 - B3A SINE B2 -11 187 1 3 1234 219 228 17 34 chr11 85097815 85097874 -36745982 + CT-rich Low_complexity Low_complexity 3 60 0 3 1234 628 336 65 43 chr11 85097951 85098365 -36745491 - Lx8 LINE L1 -8 7465 7043 3 1234 370 272 51 85 chr11 85098381 85098558 -36745298 - Lx8 LINE L1 -882 6591 6421 3 1234 392 91 7 0 chr11 85098562 85098623 -36745233 - ORR1C2 LTR MaLR 0 421 336 3 1234 356 244 66 114 chr11 85098656 85099071 -36744785 - RLTR12B LTR ERVK -24 544 163 3 1234 2944 34 43 0 chr11 85099072 85099424 -36744432 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1234 56429 22 17 7 chr11 85099424 85105830 -36738026 - IAPEz-int LTR ERVK 0 6481 8 3 1234 2944 34 43 0 chr11 85105830 85106182 -36737674 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1234 327 161 16 16 chr11 85106196 85106259 -36737597 - RLTR12B LTR ERVK -427 101 39 3 1234 267 103 0 0 chr11 85106305 85106344 -36737512 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1234 1173 82 0 0 chr11 85106344 85106491 -36737365 - B1_Mus2 SINE Alu 0 147 1 3 1234 3139 165 63 24 chr11 85106546 85107180 -36736676 - MYSERV6-int LTR ERVK -287 8672 8014 3 1234 270 273 40 0 chr11 85107183 85107282 -36736574 - MYSERV-int LTR ERVK -1176 5374 5272 3 1234 1595 163 18 86 chr11 85107283 85107302 -36736554 - ORR1C2 LTR MaLR -38 346 334 3 1234 2366 85 126 0 chr11 85107302 85107667 -36736189 - IAPLTR2a LTR ERVK 0 411 1 3 1234 1595 163 18 86 chr11 85107667 85107983 -36735873 - ORR1C2 LTR MaLR -51 333 34 3 1234 189 0 0 0 chr11 85108020 85108041 -36735815 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1234 1141 75 0 14 chr11 85108237 85108385 -36735471 + B1_Mus1 SINE Alu 3 148 0 3 1234 391 239 21 11 chr11 85108692 85108785 -36735071 - Lx8 LINE L1 -1076 6397 6304 3 1234 228 269 39 0 chr11 85108842 85108894 -36734962 - ID4_ SINE ID -9 74 21 3 1234 1026 16 16 0 chr11 85108946 85109070 -36734786 - B1_Mus1 SINE Alu 0 148 23 3 1234 360 236 209 0 chr11 85109073 85109221 -36734635 - L1MA5A LINE L1 -470 5827 5649 3 1234 2038 126 13 0 chr11 85109255 85109565 -36734291 - ORR1A3 LTR MaLR -8 318 5 3 1234 464 248 116 35 chr11 85109569 85109799 -36734057 - L1MA5A LINE L1 -687 5625 5321 3 1234 512 236 40 54 chr11 85109950 85110098 -36733758 + B1F SINE Alu 2 147 -2 3 1234 263 370 100 17 chr11 85110436 85110667 -36733189 - MLT1K LTR MaLR -277 318 69 3 1234 572 158 208 40 chr11 85110858 85110983 -36732873 - B1_Mus2 SINE Alu -1 146 1 3 1234 645 226 95 33 chr11 85111002 85111110 -36732746 - 7SK RNA RNA -104 227 120 3 1234 261 83 0 0 chr11 85111110 85111146 -36732710 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1234 645 226 95 33 chr11 85111146 85111248 -36732608 - 7SK RNA RNA -212 119 5 3 1234 381 317 7 92 chr11 85111254 85111407 -36732449 - ID_B1 SINE B4 -6 218 79 3 1234 496 154 9 9 chr11 85111867 85111972 -36731884 + CT-rich Low_complexity Low_complexity 2 106 0 3 1234 1339 105 21 0 chr11 85111996 85112187 -36731669 - B2_Mm2 SINE B2 0 195 1 3 1234 410 257 9 37 chr11 85112276 85112385 -36731471 - B1_Mur3 SINE Alu -15 134 29 3 1234 626 232 89 67 chr11 85112712 85112892 -36730964 - B3 SINE B2 -3 192 9 3 1234 1090 82 7 7 chr11 85112911 85113058 -36730798 - B1_Mus1 SINE Alu -1 147 1 3 1234 515 263 22 8 chr11 85113086 85113220 -36730636 + B1F1 SINE Alu 1 136 -13 3 1234 413 320 78 26 chr11 85113346 85113577 -36730279 + B4A SINE B4 12 254 -38 3 1234 315 0 0 0 chr11 85113640 85113675 -36730181 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1234 371 106 0 96 chr11 85113741 85113814 -36730042 + B2_Mm2 SINE B2 1 66 -129 3 1234 1727 21 0 0 chr11 85113832 85114025 -36729831 - B2_Mm1a SINE B2 0 193 1 3 1234 297 330 47 11 chr11 85114091 85114281 -36729575 + Tigger13a DNA MER2_type 468 664 -107 3 1234 793 59 246 0 chr11 85114304 85114422 -36729434 + B1_Mus2 SINE Alu 1 147 0 3 1234 1584 32 27 0 chr11 85114601 85114787 -36729069 + B2_Mm1a SINE B2 1 191 -2 3 1234 890 219 26 10 chr11 85114823 85115017 -36728839 + B3 SINE B2 1 197 -19 3 1234 469 261 8 8 chr11 85115087 85115207 -36728649 - PB1D9 SINE Alu 0 120 1 3 1234 419 190 9 5 chr11 85115256 85115353 -36728503 + PB1D10 SINE Alu 5 102 -47 3 1234 741 12 0 0 chr11 85115432 85115518 -36728338 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1234 419 259 38 64 chr11 85115518 85115664 -36728192 - RSINE1 SINE B4 -15 150 8 3 1234 234 0 0 0 chr11 85115693 85115719 -36728137 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1234 1110 50 43 0 chr11 85115719 85115860 -36727996 - B1_Mus2 SINE Alu 0 147 1 3 1234 593 293 5 45 chr11 85116317 85116517 -36727339 + B3A SINE B2 3 194 -4 3 1234 509 317 39 92 chr11 85116572 85116722 -36727134 - ID_B1 SINE B4 0 224 79 3 1234 180 0 0 0 chr11 85116722 85116742 -36727114 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 3 1234 509 317 39 92 chr11 85116742 85116820 -36727036 - ID SINE ID -146 78 8 3 1234 379 197 6 23 chr11 85117067 85117173 -36726683 + B1F SINE Alu 18 117 0 3 1234 662 182 28 49 chr11 85117629 85117773 -36726083 - B1_Mur2 SINE Alu -1 148 8 3 1234 286 254 85 134 chr11 85117773 85117792 -36726064 - B4 SINE B4 -67 224 70 3 1234 342 0 0 0 chr11 85117959 85117997 -36725859 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1234 303 28 0 0 chr11 85117997 85118032 -36725824 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 3 1234 242 291 0 37 chr11 85118176 85118258 -36725598 + B4A SINE B4 197 275 -17 3 1234 1434 69 10 16 chr11 85118598 85118790 -36725066 + B2_Mm2 SINE B2 1 191 -4 3 1234 440 153 61 10 chr11 85118794 85118893 -36724963 + PB1D10 SINE Alu 1 104 -13 3 1234 483 279 31 0 chr11 85118910 85119039 -36724817 + B1_Mur1 SINE Alu 1 133 -16 3 1234 513 287 7 14 chr11 85119129 85119274 -36724582 - B1F1 SINE Alu -5 144 1 3 1234 247 194 27 14 chr11 85119311 85119341 -36724515 + A-rich Low_complexity Low_complexity 2 31 0 3 1234 744 212 14 0 chr11 85119341 85119487 -36724369 + B1_Mus1 SINE Alu 1 148 0 3 1234 247 194 27 14 chr11 85119487 85119529 -36724327 + A-rich Low_complexity Low_complexity 32 75 0 3 1234 242 226 63 116 chr11 85119598 85119693 -36724163 - PB1D7 SINE Alu -7 113 24 3 1234 560 241 124 0 chr11 85119628 85119773 -36724083 - ID_B1 SINE B4 -54 170 8 3 1234 972 188 124 0 chr11 85119797 85119983 -36723873 + B3 SINE B2 1 209 -7 3 1234 26 30 0 0 chr11 85119984 85120017 -36723839 + AT_rich Low_complexity Low_complexity 1 33 0 3 1234 314 188 58 23 chr11 85120020 85120107 -36723749 + MTD LTR MaLR 223 312 -107 3 1234 421 252 53 15 chr11 85120868 85121001 -36722855 - B1F2 SINE Alu -1 148 11 3 1234 200 86 29 0 chr11 85121284 85121319 -36722537 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1234 22 0 0 0 chr11 85121336 85121358 -36722498 + AT_rich Low_complexity Low_complexity 1 22 0 3 1234 959 24 0 16 chr11 85121371 85121496 -36722360 + B1_Mus1 SINE Alu 25 147 -1 3 1234 1390 70 17 0 chr11 85121566 85121738 -36722118 - B2_Mm2 SINE B2 -19 176 2 3 1234 253 392 0 0 chr11 85121738 85121812 -36722044 - ID_B1 SINE B4 -67 157 84 3 1234 295 193 231 21 chr11 85121859 85122002 -36721854 + Lx9 LINE L1 7472 7644 0 3 1234 550 135 58 0 chr11 85122052 85122156 -36721700 - B1_Mus1 SINE Alu 0 148 39 3 1234 383 306 31 19 chr11 85122165 85122325 -36721531 - RSINE1 SINE B4 -2 163 2 3 1234 519 167 219 0 chr11 85122501 85122615 -36721241 + B1_Mur4 SINE Alu 2 140 -10 3 1234 4551 29 2 0 chr11 85122719 85123243 -36720613 + L1Md_T LINE L1 6058 6582 0 3 1234 697 216 257 0 chr11 85123252 85123423 -36720433 + B3 SINE B2 1 215 -1 3 1234 369 158 208 10 chr11 85123466 85123562 -36720294 + B3 SINE B2 1 115 -101 3 1234 21 71 0 0 chr11 85125163 85125205 -36718651 + GC_rich Low_complexity Low_complexity 1 42 0 3 1234 661 214 7 41 chr11 85126847 85126993 -36716863 + B1_Mur3 SINE Alu 1 141 -8 4 1234 287 222 27 14 chr11 85127028 85127101 -36716755 + B1F SINE Alu 7 80 -69 4 1234 350 250 47 136 chr11 85127322 85127535 -36716321 - B3A SINE B2 -3 195 2 4 1234 627 203 16 0 chr11 85127878 85128001 -36715855 + B1_Mur1 SINE Alu 6 130 -19 4 1234 216 97 0 0 chr11 85128006 85128037 -36715819 + (CAAAG)n Simple_repeat Simple_repeat 2 32 0 4 1234 1018 217 24 0 chr11 85128087 85128294 -36715562 + B3 SINE B2 5 216 0 4 1234 1081 77 7 0 chr11 85128474 85128617 -36715239 - B1_Mus1 SINE Alu 0 148 5 4 1234 270 222 47 16 chr11 85128657 85128721 -36715135 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 4 1234 444 258 58 0 chr11 85128822 85128942 -36714914 + B1_Mur1 SINE Alu 17 143 -6 4 1234 505 272 67 20 chr11 85128969 85129120 -36714736 + B3A SINE B2 46 203 -13 4 1234 582 239 138 40 chr11 85129173 85129500 -36714356 - Charlie1a DNA MER1_type -209 1246 888 4 1234 337 135 27 13 chr11 85129529 85129604 -36714252 + Lx9 LINE L1 7569 7644 0 4 1234 240 276 98 52 chr11 85129845 85129998 -36713858 - Charlie1a DNA MER1_type -646 809 650 4 1234 304 255 66 38 chr11 85130058 85130164 -36713692 - PB1D10 SINE Alu 0 117 9 4 1234 255 193 105 0 chr11 85130271 85130328 -36713528 - ID_B1 SINE B4 -73 151 89 4 1234 1081 90 7 0 chr11 85130345 85130489 -36713367 - B1_Mus2 SINE Alu -1 146 2 4 1234 473 247 147 31 chr11 85130560 85130723 -36713133 - B4 SINE B4 -12 280 99 4 1234 24 53 0 0 chr11 85130728 85130766 -36713090 + AT_rich Low_complexity Low_complexity 1 38 0 4 1234 330 111 0 18 chr11 85130782 85130837 -36713019 - B2_Mm2 SINE B2 -94 101 48 4 1234 1257 92 69 0 chr11 85130876 85131049 -36712807 - B2_Mm2 SINE B2 -10 185 1 4 1234 192 135 0 0 chr11 85131058 85131095 -36712761 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1234 2177 43 0 0 chr11 85131113 85131369 -36712487 - L1Md_F2 LINE L1 -12 6570 6315 4 1234 810 51 248 0 chr11 85131372 85131489 -36712367 - B1_Mus1 SINE Alu -1 147 2 4 1234 1083 94 0 61 chr11 85131602 85131615 -36712241 - B2_Mm2 SINE B2 -25 170 160 4 1234 201 74 0 0 chr11 85131615 85131642 -36712214 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1234 1083 94 0 61 chr11 85131642 85131809 -36712047 - B2_Mm2 SINE B2 -36 159 1 4 1234 374 298 24 24 chr11 85131897 85132062 -36711794 - Charlie1a DNA MER1_type -1209 246 82 4 1234 266 330 18 62 chr11 85132337 85132450 -36711406 - RSINE1 SINE B4 -41 124 17 4 1234 483 238 0 69 chr11 85132605 85132736 -36711120 + RSINE1 SINE B4 3 124 -41 4 1234 367 247 114 146 chr11 85132827 85133274 -36710582 - MLT1C LTR MaLR 0 467 42 4 1234 633 226 20 27 chr11 85133915 85134065 -36709791 - B1F SINE Alu 0 149 1 4 1234 247 262 118 27 chr11 85134303 85134413 -36709443 + MIR SINE MIR 53 172 -90 4 1234 1143 82 0 20 chr11 85134523 85134673 -36709183 - B1_Mus2 SINE Alu 0 147 1 4 1234 244 280 39 16 chr11 85134744 85134826 -36709030 - B1F2 SINE Alu -31 86 6 4 1234 22 0 0 0 chr11 85134832 85134854 -36709002 + AT_rich Low_complexity Low_complexity 1 22 0 4 1234 447 275 82 30 chr11 85134868 85135003 -36708853 + B1F SINE Alu 1 142 -7 4 1234 265 254 0 29 chr11 85135005 85135074 -36708782 + B2_Mm2 SINE B2 1 67 -128 4 1234 401 243 18 27 chr11 85135066 85135176 -36708680 + B3 SINE B2 104 212 -4 4 1234 271 259 19 19 chr11 85135207 85135298 -36708558 + ID4 SINE ID 23 113 -39 4 1234 361 298 2 25 chr11 85135447 85135573 -36708283 - 7SLRNA srpRNA srpRNA -32 279 28 4 1234 317 315 185 0 chr11 85135996 85136126 -36707730 - RSINE1 SINE B4 0 165 12 4 1234 386 85 17 0 chr11 85136137 85136196 -36707660 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1234 283 219 191 61 chr11 85136196 85136327 -36707529 - B1_Mur1 SINE Alu -1 148 1 4 1234 653 254 0 0 chr11 85136332 85136474 -36707382 - ID_B1 SINE B4 -1 223 82 4 1234 480 281 36 22 chr11 85136629 85136767 -36707089 - B1F2 SINE Alu -1 148 9 4 1234 1469 28 33 11 chr11 85137049 85137233 -36706623 - B2_Mm2 SINE B2 -6 189 2 4 1234 225 216 277 9 chr11 85137915 85138027 -36705829 - B3A SINE B2 -42 156 15 4 1234 181 380 40 0 chr11 85138359 85138459 -36705397 + MIRc SINE MIR 55 158 -110 4 1234 946 144 14 7 chr11 85138471 85138618 -36705238 - B1_Mus1 SINE Alu 0 148 1 4 1234 762 228 23 15 chr11 85138722 85138932 -36704924 + B3A SINE B2 3 203 -13 4 1234 472 184 0 125 chr11 85138963 85139075 -36704781 + B1_Mur1 SINE Alu 40 137 -12 4 1234 27 73 0 0 chr11 85139122 85139177 -36704679 + AT_rich Low_complexity Low_complexity 1 55 0 4 1234 21 36 0 0 chr11 85139409 85139437 -36704419 + AT_rich Low_complexity Low_complexity 1 28 0 4 1234 1282 214 135 3 chr11 85139469 85139787 -36704069 + MTD LTR MaLR 1 360 -59 4 1234 1170 94 58 0 chr11 85139787 85139958 -36703898 + B2_Mm2 SINE B2 1 181 -14 4 1234 874 75 22 36 chr11 85140000 85140138 -36703718 - B1_Mus1 SINE Alu -5 143 8 4 1234 280 87 0 0 chr11 85140136 85140181 -36703675 + MTD LTR MaLR 375 421 0 4 1234 350 280 68 0 chr11 85140693 85140811 -36703045 - B1F SINE Alu -10 139 14 4 1234 252 301 89 95 chr11 85140811 85140853 -36703003 - B4A SINE B4 -47 245 198 4 1234 422 218 35 52 chr11 85140853 85140865 -36702991 - PB1D10 SINE Alu 0 117 106 4 1234 1094 88 0 7 chr11 85140865 85141013 -36702843 - B1_Mus2 SINE Alu 0 147 1 4 1234 252 301 89 95 chr11 85141013 85141116 -36702740 - B4A SINE B4 -95 197 89 4 1234 447 19 0 0 chr11 85141433 85141485 -36702371 + (TATG)n Simple_repeat Simple_repeat 4 55 0 4 1234 248 303 73 8 chr11 85141506 85141629 -36702227 - Charlie1a DNA MER1_type -239 1216 1086 4 1234 217 158 16 66 chr11 85141656 85141671 -36702185 + polypyrimidine Low_complexity Low_complexity 46 59 0 4 1234 336 167 275 11 chr11 85141671 85141762 -36702094 - PB1D9 SINE Alu -1 119 5 4 1234 217 158 16 66 chr11 85141762 85141788 -36702068 + polypyrimidine Low_complexity Low_complexity 19 45 0 4 1234 1645 27 21 0 chr11 85141788 85141976 -36701880 - B2_Mm1a SINE B2 0 193 2 4 1234 217 158 16 66 chr11 85141976 85141994 -36701862 + polypyrimidine Low_complexity Low_complexity 2 18 0 4 1234 263 316 13 0 chr11 85142009 85142085 -36701771 - ID4_ SINE ID -6 77 1 4 1234 540 42 0 0 chr11 85142090 85142161 -36701695 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 4 1234 1124 94 6 0 chr11 85142166 85142326 -36701530 - B2_Mm1t SINE B2 -30 163 3 4 1234 358 187 198 0 chr11 85142335 85142426 -36701430 - B1_Mur2 SINE Alu -6 143 35 4 1234 221 187 65 14 chr11 85142467 85142537 -36701319 - ID4 SINE ID -59 93 20 4 1234 359 298 100 100 chr11 85143722 85144002 -36699854 - B4A SINE B4 -1 291 12 4 1234 401 263 0 0 chr11 85144029 85144124 -36699732 - ID4 SINE ID -55 97 3 4 1234 466 270 10 0 chr11 85144424 85144524 -36699332 - RSINE1 SINE B4 -31 134 34 4 1234 180 97 0 0 chr11 85144855 85144886 -36698970 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1234 300 27 0 0 chr11 85144899 85144936 -36698920 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1234 1148 81 0 0 chr11 85146237 85146385 -36697471 - B1_Mus1 SINE Alu 0 148 1 4 1234 204 97 0 0 chr11 85146416 85146447 -36697409 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1234 276 309 70 28 chr11 85146629 85146772 -36697084 - B1F1 SINE Alu 0 149 1 4 1234 774 206 200 0 chr11 85146850 85147030 -36696826 + B3 SINE B2 1 216 0 4 1234 892 205 23 23 chr11 85147434 85147649 -36696207 + ID_B1 SINE B4 3 217 -7 4 1234 393 292 58 0 chr11 85147756 85147893 -36695963 - RSINE1 SINE B4 -18 147 3 4 1234 24 0 0 0 chr11 85147906 85147930 -36695926 + AT_rich Low_complexity Low_complexity 1 24 0 4 1234 231 287 70 118 chr11 85147930 85148000 -36695856 - ID_B1 SINE B4 -6 218 152 4 1234 444 37 0 0 chr11 85148000 85148054 -36695802 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 4 1234 231 287 70 118 chr11 85148054 85148212 -36695644 - ID_B1 SINE B4 -73 151 1 4 1234 270 204 0 0 chr11 85148217 85148271 -36695585 - ID_B1 SINE B4 -67 157 104 4 1234 225 225 40 53 chr11 85148271 85148290 -36695566 - B1F2 SINE Alu -68 79 8 4 1234 1003 222 0 40 chr11 85148837 85149062 -36694794 - B3 SINE B2 0 216 1 4 1234 660 234 83 0 chr11 85149113 85149258 -36694598 - RSINE1 SINE B4 -6 159 3 4 1234 642 132 9 9 chr11 85149410 85149517 -36694339 + B1_Mm SINE Alu 34 140 -7 4 1234 347 154 46 0 chr11 85149580 85149645 -36694211 - ID4_ SINE ID -4 79 12 4 1234 418 273 73 0 chr11 85150864 85151014 -36692842 - L1MB7 LINE L1 -157 6027 5867 4 1234 243 342 0 0 chr11 85151029 85151102 -36692754 - ID4_ SINE ID 0 83 11 4 1234 811 163 7 60 chr11 85151411 85151561 -36692295 + B1_Mur2 SINE Alu 2 143 -6 4 1234 476 252 42 0 chr11 85151823 85151942 -36691914 - ID_B1 SINE B4 -6 218 95 4 1234 414 283 80 0 chr11 85151942 85151955 -36691901 - B1F1 SINE Alu 0 111 1 4 1234 232 250 119 0 chr11 85151959 85152043 -36691813 + MER104 DNA Tc2 40 133 -48 4 1234 428 300 9 0 chr11 85152065 85152175 -36691681 + B1F SINE Alu 8 118 -31 4 1234 324 94 0 0 chr11 85152496 85152549 -36691307 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 4 1234 498 192 132 8 chr11 85152549 85152670 -36691186 - B1_Mur2 SINE Alu -12 137 2 4 1234 424 327 38 57 chr11 85152812 85152971 -36690885 - RSINE1 SINE B4 -4 161 6 4 1234 435 38 0 0 chr11 85153322 85153375 -36690481 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1234 503 227 154 55 chr11 85153377 85153509 -36690347 - ORR1D1 LTR MaLR -8 366 214 5 1234 423 0 0 0 chr11 85153509 85153556 -36690300 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1234 937 198 65 10 chr11 85153560 85153759 -36690097 - B3 SINE B2 -5 211 2 5 1234 503 227 154 55 chr11 85153759 85153803 -36690053 - ORR1D1 LTR MaLR -161 213 170 5 1234 636 251 38 22 chr11 85153857 85154040 -36689816 - ORR1D1 LTR MaLR -188 186 1 5 1234 314 257 192 29 chr11 85154042 85154146 -36689710 - ID_B1 SINE B4 0 224 104 5 1234 243 0 0 0 chr11 85154603 85154630 -36689226 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1234 232 239 0 130 chr11 85154669 85154746 -36689110 - B1F1 SINE Alu -50 67 1 5 1234 704 257 11 21 chr11 85154797 85154984 -36688872 + B3A SINE B2 8 192 -6 5 1234 215 255 0 0 chr11 85155564 85155611 -36688245 - PB1 SINE Alu -63 64 18 5 1234 670 206 20 40 chr11 85155727 85155879 -36687977 - B1F2 SINE Alu 0 149 1 5 1234 364 292 42 67 chr11 85155879 85156043 -36687813 - RSINE1 SINE B4 -2 163 3 5 1234 545 307 0 0 chr11 85156084 85156221 -36687635 - ID_B1 SINE B4 -8 216 80 5 1234 319 283 131 0 chr11 85156256 85156355 -36687501 + PB1D10 SINE Alu 1 112 -5 5 1234 389 277 10 19 chr11 85156627 85156730 -36687126 + PB1D7 SINE Alu 3 104 -16 5 1234 305 289 120 96 chr11 85156769 85157038 -36686818 + B4 SINE B4 1 276 -16 5 1234 412 268 93 1 chr11 85157097 85157227 -36686629 + B1F SINE Alu 8 147 -2 5 1234 737 250 40 30 chr11 85157474 85157558 -36686298 + ID SINE ID 2 87 -137 5 1234 325 331 90 23 chr11 85157558 85157691 -36686165 + B1F SINE Alu 1 142 -7 5 1234 235 356 58 0 chr11 85157726 85157830 -36686026 + RSINE1 SINE B4 55 164 -1 5 1234 682 239 0 7 chr11 85158188 85158331 -36685525 + B1_Mus1 SINE Alu 6 147 -1 5 1234 1538 16 33 0 chr11 85158338 85158520 -36685336 + B2_Mm1a SINE B2 2 189 -4 5 1234 911 149 7 13 chr11 85158886 85159036 -36684820 - B1_Mur4 SINE Alu -1 149 1 5 1234 411 251 287 0 chr11 85160852 85161019 -36682837 + ID_B1 SINE B4 2 216 -8 5 1234 268 127 206 0 chr11 85161134 85161197 -36682659 + BC1_Mm scRNA scRNA 1 76 -76 5 1234 481 261 8 0 chr11 85161221 85161340 -36682516 - B3 SINE B2 0 216 97 5 1234 366 136 0 0 chr11 85161346 85161427 -36682429 + (T)n Simple_repeat Simple_repeat 1 81 0 5 1234 1061 92 35 0 chr11 85161427 85161569 -36682287 - B1_Mm SINE Alu 0 147 1 5 1234 1309 63 0 120 chr11 85161569 85161785 -36682071 - B2_Mm2 SINE B2 -2 193 3 5 1234 431 261 0 0 chr11 85161795 85161887 -36681969 - B3 SINE B2 -122 94 3 5 1234 805 29 0 9 chr11 85162268 85162374 -36681482 - B1_Mus2 SINE Alu -13 134 30 5 1234 2719 170 72 22 chr11 85162439 85163052 -36680804 - RMER1A Other Other -2 1064 414 5 1234 406 240 30 0 chr11 85163170 85163270 -36680586 - PB1D10 SINE Alu -6 111 9 5 1234 280 318 84 15 chr11 85163680 85163811 -36680045 - B1F SINE Alu 0 149 10 5 1234 241 254 48 0 chr11 85163827 85163890 -36679966 - ID_B1 SINE B4 -2 222 157 5 1234 258 56 0 0 chr11 85164004 85164040 -36679816 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1234 494 252 92 33 chr11 85164359 85164511 -36679345 - RSINE1 SINE B4 -4 161 1 5 1234 1451 188 68 75 chr11 85164901 85165226 -36678630 + MTC LTR MaLR 40 372 -49 5 1234 1056 70 14 7 chr11 85165226 85165371 -36678485 - B1_Mus1 SINE Alu -1 147 2 5 1234 1451 188 68 75 chr11 85165371 85165430 -36678426 + MTC LTR MaLR 373 421 0 5 1234 24 67 0 0 chr11 85165621 85165666 -36678190 + AT_rich Low_complexity Low_complexity 1 45 0 5 1234 252 318 11 0 chr11 85167543 85167631 -36676225 - ID_B1 SINE B4 -18 206 118 5 1234 261 0 0 0 chr11 85167668 85167697 -36676159 + (TTA)n Simple_repeat Simple_repeat 3 31 0 5 1234 296 256 0 71 chr11 85167714 85167798 -36676058 - B1F SINE Alu -54 95 18 5 1234 1466 73 11 0 chr11 85167834 85168025 -36675831 - B2_Mm2 SINE B2 -1 194 2 5 1234 238 264 0 0 chr11 85168155 85168208 -36675648 + PB1D7 SINE Alu 68 120 0 5 1234 735 206 37 0 chr11 85168533 85168669 -36675187 + B1_Mus1 SINE Alu 1 141 -7 5 1234 309 195 90 22 chr11 85168799 85168888 -36674968 + RSINE1 SINE B4 18 112 -53 5 1234 26 30 0 0 chr11 85168930 85168963 -36674893 + AT_rich Low_complexity Low_complexity 1 33 0 5 1234 560 213 142 0 chr11 85169217 85169344 -36674512 - B1_Mur1 SINE Alu 0 149 5 5 1234 1162 61 0 20 chr11 85169354 85169504 -36674352 - B1_Mm SINE Alu 0 147 1 5 1234 399 260 63 0 chr11 85169508 85169635 -36674221 - B1F1 SINE Alu 0 149 15 5 1234 626 174 97 15 chr11 85169668 85169802 -36674054 - B1_Mur2 SINE Alu 0 149 5 5 1234 514 217 98 16 chr11 85169953 85170075 -36673781 + B1F SINE Alu 12 143 -6 5 1234 247 287 87 14 chr11 85170258 85170396 -36673460 - MIR SINE MIR -93 169 22 5 1234 444 213 236 0 chr11 85170989 85171116 -36672740 - ID_B1 SINE B4 -1 223 67 5 1234 473 191 318 47 chr11 85171151 85171321 -36672535 - B3 SINE B2 0 216 1 5 1234 337 227 143 10 chr11 85171338 85171436 -36672420 - PB1D7 SINE Alu -1 119 9 5 1234 216 0 0 0 chr11 85171679 85171703 -36672153 + (TTA)n Simple_repeat Simple_repeat 2 25 0 5 1234 1075 44 22 0 chr11 85171707 85171844 -36672012 - B1_Mm SINE Alu -7 140 1 5 1234 1283 69 52 0 chr11 85171856 85172030 -36671826 - B2_Mm2 SINE B2 -11 184 2 5 1234 441 0 0 0 chr11 85172052 85172101 -36671755 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 5 1234 549 213 97 62 chr11 85172185 85172330 -36671526 - B1_Mur4 SINE Alu 0 150 1 5 1234 480 195 26 8 chr11 85172330 85172444 -36671412 - PB1D10 SINE Alu 0 117 5 5 1234 339 236 70 16 chr11 85172455 85172584 -36671272 - B4A SINE B4 -66 226 91 5 1234 1025 51 72 14 chr11 85173518 85173657 -36670199 - B1_Mm SINE Alu 0 147 1 5 1234 1399 98 0 25 chr11 85174965 85175163 -36668693 - B2_Mm2 SINE B2 -1 194 2 5 1234 246 300 12 12 chr11 85175353 85175434 -36668422 + PB1D10 SINE Alu 2 82 -35 5 1234 336 228 0 136 chr11 85175393 85175427 -36668429 + MT2B LTR ERVL 138 151 -450 5 1234 798 133 0 0 chr11 85175427 85175555 -36668301 + B1_Mus1 SINE Alu 1 128 -20 5 1234 183 156 0 0 chr11 85176082 85176114 -36667742 + CT-rich Low_complexity Low_complexity 2 33 0 5 1234 210 246 16 16 chr11 85176304 85176366 -36667490 - RSINE1 SINE B4 -40 125 64 5 1234 252 151 0 19 chr11 85176432 85176486 -36667370 - PB1D7 SINE Alu -1 119 67 5 1234 242 321 0 58 chr11 85176857 85176943 -36666913 - PB1D10 SINE Alu -46 81 1 5 1234 210 333 0 29 chr11 85176943 85176981 -36666875 - B4A SINE B4 -208 84 50 5 1234 818 227 221 10 chr11 85177144 85177456 -36666400 - MTD LTR MaLR 0 419 42 5 1234 214 239 75 0 chr11 85177477 85177544 -36666312 + B1F SINE Alu 20 91 -58 5 1234 731 184 127 58 chr11 85177555 85177815 -36666041 + B4A SINE B4 5 282 -10 5 1234 957 63 1 32 chr11 85177815 85177962 -36665894 + Lx3_Mus LINE L1 6509 6653 -356 5 1234 422 127 85 50 chr11 85177930 85178071 -36665785 + Lx3_Mus LINE L1 6855 7000 -9 5 1234 1069 62 28 0 chr11 85178219 85178363 -36665493 - B1_Mus1 SINE Alu 0 148 1 5 1234 222 37 0 0 chr11 85178381 85178408 -36665448 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1234 235 237 33 33 chr11 85178408 85178469 -36665387 - PB1D10 SINE Alu -9 108 48 5 1234 389 246 236 14 chr11 85178423 85178563 -36665293 - ID_B1 SINE B4 -52 172 2 5 1234 316 279 39 0 chr11 85179249 85179353 -36664503 + PB1D10 SINE Alu 2 109 -8 5 1234 186 43 0 0 chr11 85179434 85179457 -36664399 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1234 765 47 2 2 chr11 85179458 85179572 -36664284 - B1_Mm SINE Alu -5 115 2 5 1234 462 193 46 85 chr11 85179572 85179602 -36664254 - B4 SINE B4 -200 92 68 5 1234 816 198 112 0 chr11 85179655 85179842 -36664014 - B3 SINE B2 -7 209 2 5 1234 316 220 16 128 chr11 85179853 85179978 -36663878 - L1MB3 LINE L1 -288 5895 5785 5 1234 270 330 10 0 chr11 85180303 85180403 -36663453 - B1_Mur1 SINE Alu -36 113 13 5 1234 281 255 96 58 chr11 85180416 85180520 -36663336 - ID_B1 SINE B4 -7 217 110 5 1234 336 270 26 35 chr11 85180596 85180711 -36663145 - B1F SINE Alu -8 141 28 5 1234 387 256 70 30 chr11 85180780 85180926 -36662930 - L1MB3 LINE L1 -641 5659 5508 5 1234 637 188 37 30 chr11 85181034 85181196 -36662660 - B3 SINE B2 -2 193 29 5 1234 686 275 77 38 chr11 85181310 85181597 -36662259 + Tigger7 DNA MER2_type 8 305 -2186 5 1234 846 41 41 0 chr11 85181648 85181770 -36662086 + B1_Mus2 SINE Alu 21 147 0 5 1234 539 175 131 66 chr11 85182038 85182205 -36661651 - B3 SINE B2 -11 205 14 5 1234 1149 68 0 0 chr11 85182272 85182419 -36661437 - B1_Mus1 SINE Alu 0 148 2 5 1234 24 0 0 0 chr11 85182507 85182531 -36661325 + AT_rich Low_complexity Low_complexity 1 24 0 5 1234 326 182 300 10 chr11 85182664 85182764 -36661092 - RSINE1 SINE B4 -35 130 2 5 1234 256 238 133 16 chr11 85183083 85183211 -36660645 + MTE2a LTR MaLR 120 262 -117 5 1234 291 211 88 0 chr11 85183304 85183361 -36660495 + ID_B1 SINE B4 158 219 -5 5 1234 289 165 48 117 chr11 85183380 85183483 -36660373 + MT2B LTR ERVL 144 239 -362 5 1234 521 185 35 43 chr11 85183412 85183553 -36660303 + B1_Mus1 SINE Alu 9 148 0 5 1234 323 286 90 16 chr11 85183606 85183794 -36660062 - L1ME3 LINE L1 -263 5899 5698 5 1234 233 324 84 0 chr11 85183870 85183941 -36659915 + ID4 SINE ID 4 80 -3 6 1234 288 250 102 20 chr11 85183960 85184058 -36659798 - B1F1 SINE Alu -23 126 21 6 1234 1589 48 5 0 chr11 85184108 85184297 -36659559 - B2_Mm1t SINE B2 -2 191 2 6 1234 354 223 175 19 chr11 85184307 85184467 -36659389 - B3A SINE B2 -13 185 1 6 1234 205 211 0 0 chr11 85184725 85184763 -36659093 + (TTA)n Simple_repeat Simple_repeat 3 40 0 6 1234 801 93 0 0 chr11 85184764 85184882 -36658974 - B1_Mur4 SINE Alu -6 144 27 6 1234 740 174 43 0 chr11 85185077 85185215 -36658641 - B1_Mur4 SINE Alu 0 150 7 6 1234 337 303 52 121 chr11 85185263 85185314 -36658542 + RSINE1 SINE B4 2 56 -109 6 1234 351 0 0 0 chr11 85185314 85185353 -36658503 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1234 1084 73 0 0 chr11 85185353 85185490 -36658366 - B1_Mus1 SINE Alu -10 138 2 6 1234 337 303 52 121 chr11 85185490 85185610 -36658246 + RSINE1 SINE B4 57 161 -4 6 1234 602 177 108 0 chr11 85185661 85185791 -36658065 + B1_Mur3 SINE Alu 1 144 -5 6 1234 1177 173 34 19 chr11 85185944 85186150 -36657706 + B3 SINE B2 1 209 -7 6 1234 309 290 20 9 chr11 85186398 85186510 -36657346 + PB1D10 SINE Alu 5 127 0 6 1234 315 0 0 0 chr11 85186533 85186568 -36657288 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1234 1222 55 0 7 chr11 85186760 85186908 -36656948 - B1_Mm SINE Alu 0 147 1 6 1234 278 299 13 0 chr11 85186959 85187036 -36656820 - PB1D10 SINE Alu -7 110 33 6 1234 453 242 32 76 chr11 85187145 85187346 -36656510 - B3 SINE B2 0 198 2 6 1234 662 124 545 0 chr11 85187770 85187915 -36655941 + URR1B DNA MER1_type 2 225 0 6 1234 223 200 20 0 chr11 85188054 85188104 -36655752 + RSINE1 SINE B4 75 125 -40 6 1234 225 0 0 0 chr11 85189404 85189429 -36654427 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1234 1153 68 0 0 chr11 85189444 85189592 -36654264 - B1_Mus1 SINE Alu 0 148 1 6 1234 310 120 0 0 chr11 85189727 85189777 -36654079 - B3 SINE B2 -6 210 161 6 1234 231 333 28 38 chr11 85190014 85190120 -36653736 + PB1D10 SINE Alu 1 105 -12 6 1234 257 281 35 35 chr11 85190238 85190323 -36653533 + ID_B1 SINE B4 106 190 -34 6 1234 363 184 100 20 chr11 85190350 85190450 -36653406 + PB1D10 SINE Alu 4 111 -6 6 1234 251 295 85 51 chr11 85190638 85190756 -36653100 - L2a LINE L2 0 3426 3305 6 1234 319 241 0 37 chr11 85190995 85191077 -36652779 + PB1D10 SINE Alu 33 111 -6 6 1234 435 248 80 27 chr11 85191205 85191317 -36652539 + B3A SINE B2 1 118 -80 6 1234 614 283 27 7 chr11 85191460 85191606 -36652250 - RSINE1 SINE B4 -2 163 15 6 1234 614 266 99 0 chr11 85191616 85191808 -36652048 - B3 SINE B2 -4 212 2 6 1234 226 333 24 95 chr11 85191976 85192102 -36651754 - PB1D10 SINE Alu 0 117 1 6 1234 299 253 0 26 chr11 85192205 85192282 -36651574 + PB1D9 SINE Alu 35 109 -11 6 1234 339 249 225 33 chr11 85192692 85193041 -36650815 - L1M5 LINE L1 -707 5737 5322 6 1234 646 152 236 0 chr11 85193057 85193222 -36650634 + B3 SINE B2 1 204 -12 6 1234 1354 70 27 5 chr11 85193632 85193818 -36650038 - B2_Mm2 SINE B2 -5 190 1 6 1234 363 212 395 7 chr11 85193851 85194003 -36649853 - ID_B1 SINE B4 -13 211 1 6 1234 845 186 27 21 chr11 85194160 85194347 -36649509 + ORR1D1 LTR MaLR 186 373 -1 6 1234 429 291 17 0 chr11 85194413 85194530 -36649326 + PB1D7 SINE Alu 1 119 -1 6 1234 198 171 0 0 chr11 85194699 85194740 -36649116 + (TAA)n Simple_repeat Simple_repeat 3 43 0 6 1234 290 324 18 0 chr11 85194740 85194851 -36649005 + (TG)n Simple_repeat Simple_repeat 1 113 0 6 1234 316 320 0 30 chr11 85194989 85195089 -36648767 - B4A SINE B4 -193 99 3 6 1234 220 281 52 17 chr11 85195124 85195182 -36648674 + 7SLRNA srpRNA srpRNA 22 81 -233 6 1234 849 183 234 0 chr11 85195347 85195522 -36648334 + B3 SINE B2 1 216 0 6 1234 272 48 24 0 chr11 85195574 85195616 -36648240 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1234 283 292 106 0 chr11 85195616 85195729 -36648127 - PB1 SINE Alu -2 125 1 6 1234 389 299 26 0 chr11 85196195 85196312 -36647544 - PB1D7 SINE Alu 0 120 1 6 154 320 304 45 62 chr11 85196668 85196847 -36647009 - B4A SINE B4 -2 290 115 6 1235 235 307 165 0 chr11 85196931 85197058 -36646798 - L1MC1 LINE L1 -114 6219 6072 6 1235 287 212 25 12 chr11 85197163 85197244 -36646612 - L1MC1 LINE L1 -430 5903 5822 6 1235 275 203 145 72 chr11 85197418 85197556 -36646300 - L1ME3A LINE L1 -177 5996 5849 6 1235 308 280 69 10 chr11 85198515 85198616 -36645240 - PB1 SINE Alu -20 107 1 6 1235 933 138 7 7 chr11 85198821 85198967 -36644889 - B1_Mus1 SINE Alu -1 147 2 6 1235 249 296 49 120 chr11 85198972 85199156 -36644700 - MER2 DNA MER2_type -92 253 83 6 1235 864 111 73 7 chr11 85199500 85199636 -36644220 - B1_Mm SINE Alu 0 147 3 6 1235 306 0 0 0 chr11 85199662 85199696 -36644160 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1235 293 283 32 96 chr11 85199909 85200034 -36643822 - L2c LINE L2 0 3387 3271 6 1235 677 230 71 18 chr11 85200293 85200461 -36643395 - B3 SINE B2 0 216 40 6 1235 892 230 34 5 chr11 85200772 85200977 -36642879 - B3 SINE B2 -2 214 4 6 1235 460 197 213 0 chr11 85200984 85201106 -36642750 - B1F2 SINE Alu 0 149 2 6 1235 438 271 114 19 chr11 85201726 85201884 -36641972 + B4 SINE B4 4 176 -116 6 1235 595 209 137 36 chr11 85202170 85202448 -36641408 - L1MC LINE L1 -2919 3227 2922 6 1235 228 197 43 43 chr11 85202481 85202500 -36641356 + PB1 SINE Alu 59 125 0 6 1235 268 146 0 0 chr11 85202500 85202548 -36641308 + ID_B1 SINE B4 174 221 -3 6 1235 451 229 70 32 chr11 85202568 85202753 -36641103 - L1MC LINE L1 -3214 2932 2741 6 1235 316 259 152 0 chr11 85203105 85203231 -36640625 + L1M5 LINE L1 5456 5601 -639 6 1235 651 256 77 11 chr11 85203271 85203453 -36640403 - B3 SINE B2 -15 201 8 6 1235 1322 77 55 0 chr11 85203476 85203658 -36640198 - B2_Mm2 SINE B2 -3 192 1 6 1235 568 198 25 25 chr11 85203676 85203795 -36640061 - PB1D9 SINE Alu 0 120 2 6 1235 439 291 57 11 chr11 85203798 85203975 -36639881 - B2_Mm2 SINE B2 -10 185 1 6 1235 220 302 104 0 chr11 85204422 85204518 -36639338 - PB1 SINE Alu -18 109 4 6 1235 231 191 39 141 chr11 85204553 85204591 -36639265 - LTR37A LTR ERV1 -251 175 137 6 1235 288 279 25 0 chr11 85204591 85204670 -36639186 + ID4_ SINE ID 2 82 -1 6 1235 231 191 39 141 chr11 85204670 85204759 -36639097 - LTR37A LTR ERV1 -290 136 61 6 1235 290 292 60 26 chr11 85205089 85205205 -36638651 - PB1D7 SINE Alu 0 120 1 6 1235 261 340 0 29 chr11 85205540 85205643 -36638213 - B1_Mur1 SINE Alu -5 144 45 6 1235 244 323 0 0 chr11 85210951 85211016 -36632840 - ID4_ SINE ID -14 69 5 6 1235 376 252 24 31 chr11 85211091 85211218 -36632638 - BC1_Mm scRNA scRNA -23 129 4 6 1235 863 102 25 19 chr11 85211306 85211465 -36632391 + (TTCCC)n Simple_repeat Simple_repeat 1 160 0 6 1235 254 118 59 0 chr11 85211466 85211517 -36632339 - B2_Mm2 SINE B2 -5 190 137 6 1235 247 83 0 0 chr11 85211516 85211552 -36632304 - B2_Mm1t SINE B2 -91 102 67 6 1235 595 52 206 0 chr11 85211597 85211694 -36632162 - B2_Mm1t SINE B2 -13 180 64 6 1235 482 290 132 3 chr11 85212444 85212632 -36631224 - B3A SINE B2 -11 205 1 6 1235 803 162 0 11 chr11 85212653 85212834 -36631022 + CT-rich Low_complexity Low_complexity 1 179 0 6 1235 646 117 18 0 chr11 85212829 85212940 -36630916 + (TC)n Simple_repeat Simple_repeat 1 113 0 6 1235 672 186 0 0 chr11 85212940 85213053 -36630803 - B1_Mus2 SINE Alu -1 146 34 6 1235 997 52 0 15 chr11 85213080 85213217 -36630639 - B1_Mm SINE Alu 0 147 13 6 1235 586 204 92 43 chr11 85213266 85213430 -36630426 - B3 SINE B2 -44 172 1 6 1235 385 282 104 22 chr11 85213555 85213689 -36630167 + ID_B1 SINE B4 80 224 0 6 1235 628 159 97 15 chr11 85213795 85213929 -36629927 + B1_Mus2 SINE Alu 2 146 -1 6 1235 331 258 121 0 chr11 85214210 85214334 -36629522 + B1F SINE Alu 3 141 -8 6 1235 1314 75 16 36 chr11 85214420 85214613 -36629243 - B2_Mm2 SINE B2 -5 190 2 6 1235 797 263 75 101 chr11 85214628 85215013 -36628843 - MTEa LTR MaLR -2 377 3 6 1235 269 262 0 0 chr11 85215028 85215089 -36628767 + ID_B1 SINE B4 163 223 -1 6 1235 389 294 0 0 chr11 85215092 85215184 -36628672 + B3A SINE B2 1 92 -106 6 1235 207 69 0 0 chr11 85215197 85215226 -36628630 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 6 1235 219 216 217 38 chr11 85215245 85215351 -36628505 + B2_Mm2 SINE B2 1 125 -70 6 1235 408 71 0 0 chr11 85215383 85215439 -36628417 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1235 261 196 0 0 chr11 85215994 85216050 -36627806 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1235 328 216 27 7 chr11 85216661 85216743 -36627113 + B1_Mur1 SINE Alu 54 136 -13 6 1235 1065 115 73 0 chr11 85216844 85217009 -36626847 + B2_Mm1t SINE B2 3 179 -14 6 1235 332 96 490 10 chr11 85217041 85217139 -36626717 + B2_Mm2 SINE B2 47 191 -4 6 1235 907 242 89 72 chr11 85217690 85218037 -36625819 + L1M4 LINE L1 5459 5811 -373 6 1235 267 261 14 14 chr11 85218182 85218252 -36625604 + CT-rich Low_complexity Low_complexity 5 74 0 6 1235 216 361 0 0 chr11 85218262 85218323 -36625533 - PB1D10 SINE Alu -56 61 1 7 1235 576 251 113 50 chr11 85218432 85218671 -36625185 - B4A SINE B4 -37 255 2 7 1235 296 233 166 11 chr11 85218743 85218927 -36624929 - L1M5 LINE L1 -410 5752 5532 7 1235 711 249 195 40 chr11 85219224 85219700 -36624156 - L1MC1 LINE L1 -379 5954 5405 7 1235 1859 114 48 10 chr11 85220432 85220742 -36623114 - ORR1A4 LTR MaLR 0 329 8 7 1235 238 352 46 9 chr11 85222318 85222427 -36621429 + B1_Mus1 SINE Alu 31 143 -5 7 1235 257 0 30 0 chr11 85223200 85223233 -36620623 + (CAA)n Simple_repeat Simple_repeat 3 36 0 7 1235 1783 73 60 82 chr11 85223511 85223779 -36620077 - L1_Mus2 LINE L1 0 6566 6305 7 1235 26 0 0 0 chr11 85224170 85224196 -36619660 + AT_rich Low_complexity Low_complexity 1 26 0 7 1235 234 0 0 0 chr11 85224253 85224279 -36619577 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1235 248 283 32 21 chr11 85224287 85224381 -36619475 - B1F2 SINE Alu -54 95 1 7 1235 201 262 0 62 chr11 85224548 85224613 -36619243 + CT-rich Low_complexity Low_complexity 5 65 0 7 1235 516 268 40 13 chr11 85224617 85224768 -36619088 - ID_B1 SINE B4 -55 169 15 7 1235 314 348 99 68 chr11 85225208 85225501 -36618355 - HAL1 LINE L1 -2043 464 163 7 1235 818 57 0 0 chr11 85225666 85225772 -36618084 - L1_Mus1 LINE L1 0 6567 6462 7 1235 22 80 0 0 chr11 85226223 85226273 -36617583 + AT_rich Low_complexity Low_complexity 1 50 0 7 1235 483 258 46 53 chr11 85226422 85226553 -36617303 - RSINE1 SINE B4 -13 152 23 7 1235 512 200 0 57 chr11 85226691 85226797 -36617059 + B1_Mur1 SINE Alu 34 133 -16 7 1235 1413 98 11 0 chr11 85227300 85227483 -36616373 - B2_Mm1t SINE B2 -7 186 2 7 1235 473 282 140 6 chr11 85227516 85227673 -36616183 - B3 SINE B2 -38 178 1 7 1235 319 206 85 21 chr11 85227673 85227762 -36616094 - B4 SINE B4 -196 96 2 7 1235 412 291 0 79 chr11 85227949 85228076 -36615780 + ID_B1 SINE B4 108 224 0 7 1235 888 201 73 29 chr11 85228094 85228299 -36615557 + B3 SINE B2 2 215 -1 7 1235 330 200 24 107 chr11 85228638 85228722 -36615134 - B1_Mur4 SINE Alu 0 150 74 7 1235 212 0 36 0 chr11 85228794 85228822 -36615034 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1235 878 196 135 5 chr11 85230149 85230334 -36613522 - B3 SINE B2 -7 209 1 7 1235 283 304 188 0 chr11 85230340 85230452 -36613404 - ID_B1 SINE B4 -8 216 84 7 1235 317 273 202 0 chr11 85230354 85230453 -36613403 - B1F SINE Alu -29 120 2 7 1235 364 197 0 14 chr11 85230586 85230658 -36613198 - ERVL-E-int LTR ERVL -1245 4512 4442 7 1235 2157 280 120 15 chr11 85230753 85231504 -36612352 - ERVL-E-int LTR ERVL -1370 4297 3468 7 1235 909 243 14 27 chr11 85231522 85231742 -36612114 - MT2A LTR ERVL -301 232 16 7 1235 7297 81 64 1 chr11 85231770 85232894 -36610962 + L1_Mus3 LINE L1 5442 6635 -3 7 1235 258 56 0 0 chr11 85233018 85233054 -36610802 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1235 335 145 14 0 chr11 85234236 85234305 -36609551 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 1235 531 294 34 34 chr11 85234603 85234779 -36609077 - B3 SINE B2 -40 176 1 7 1235 312 268 5 40 chr11 85234779 85234856 -36609000 - PB1D7 SINE Alu -38 111 42 7 1235 678 187 0 0 chr11 85236115 85236222 -36607634 + B3 SINE B2 3 109 -107 7 1235 180 77 0 0 chr11 85236229 85236255 -36607601 + (CCTA)n Simple_repeat Simple_repeat 4 29 0 7 1235 771 215 194 17 chr11 85236315 85236495 -36607361 + B3 SINE B2 1 212 -4 7 1235 26 0 0 0 chr11 85236597 85236623 -36607233 + AT_rich Low_complexity Low_complexity 1 26 0 7 1235 844 261 60 0 chr11 85236624 85236823 -36607033 - B3 SINE B2 -3 213 3 7 1235 291 152 0 0 chr11 85237199 85237245 -36606611 - B3 SINE B2 -170 46 1 7 1235 268 250 73 0 chr11 85237467 85237535 -36606321 - B4A SINE B4 -219 73 1 7 1235 209 241 35 0 chr11 85238631 85238689 -36605167 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1235 1409 264 149 17 chr11 85238724 85239195 -36604661 - Lx6 LINE L1 -20 7440 6908 7 1235 271 303 6 6 chr11 85239377 85239543 -36604313 + CT-rich Low_complexity Low_complexity 2 167 0 7 1235 349 257 112 19 chr11 85239570 85239677 -36604179 - B1_Mur1 SINE Alu -13 136 20 7 1235 501 289 27 34 chr11 85239700 85239847 -36604009 - B1F1 SINE Alu -3 146 1 7 1235 1312 83 27 27 chr11 85239967 85240152 -36603704 - B2_Mm2 SINE B2 -9 186 2 7 1235 392 229 148 17 chr11 85240300 85240435 -36603421 - B1_Mur1 SINE Alu 0 150 1 7 1235 230 343 110 55 chr11 85240492 85240711 -36603145 - B4 SINE B4 -9 283 53 7 1235 642 232 20 14 chr11 85241348 85241511 -36602345 - L1MA10 LINE L1 -13 6321 6002 7 1235 324 0 0 0 chr11 85242170 85242206 -36601650 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1235 299 304 86 36 chr11 85242773 85242913 -36600943 + MER20 DNA MER1_type 31 177 -42 7 1235 23 0 0 0 chr11 85243866 85243889 -36599967 + AT_rich Low_complexity Low_complexity 1 23 0 7 1235 21 0 0 0 chr11 85244986 85245007 -36598849 + AT_rich Low_complexity Low_complexity 1 21 0 7 1235 22 0 0 0 chr11 85246084 85246106 -36597750 + AT_rich Low_complexity Low_complexity 1 22 0 7 1235 498 202 128 30 chr11 85246108 85246241 -36597615 - B1_Mur1 SINE Alu -1 148 3 7 1235 249 309 73 0 chr11 85247131 85247186 -36596670 + ID_B1 SINE B4 68 126 -98 7 1235 325 282 13 13 chr11 85247420 85247499 -36596357 - PB1D7 SINE Alu -14 106 28 7 1235 621 138 154 44 chr11 85247514 85247650 -36596206 - B3 SINE B2 0 216 66 7 1235 476 344 0 0 chr11 85248246 85248371 -36595485 - B1F1 SINE Alu -15 134 10 7 1235 288 283 59 20 chr11 85248856 85248957 -36594899 - PB1D10 SINE Alu -8 109 5 7 1235 734 197 0 54 chr11 85249019 85249185 -36594671 + MTD LTR MaLR 1 157 -262 7 1235 403 290 26 69 chr11 85249899 85249918 -36593938 - B2_Mm1a SINE B2 -10 183 164 7 1235 369 62 0 0 chr11 85249918 85249966 -36593890 + (TATG)n Simple_repeat Simple_repeat 4 51 0 7 1235 552 259 53 41 chr11 85249966 85250135 -36593721 - B3 SINE B2 -43 173 3 7 1235 203 32 65 0 chr11 85250615 85250646 -36593210 + (CAATA)n Simple_repeat Simple_repeat 2 34 0 7 1235 332 325 24 53 chr11 85251211 85251380 -36592476 - RSINE1 SINE B4 0 165 2 7 1235 10734 63 0 0 chr11 85251606 85252945 -36590911 + L1_Mm LINE L1 3820 5158 -725 7 1235 3434 31 46 2 chr11 85252945 85253339 -36590517 - IAPLTR2a LTR ERVK 0 411 1 7 1235 6553 49 12 19 chr11 85253341 85254176 -36589680 - IAPEz-int LTR ERVK -2 6479 5651 7 1235 1483 90 0 5 chr11 85254169 85254370 -36589486 - IAPEz-int LTR ERVK -4781 1700 1501 7 1235 1553 63 0 0 chr11 85254358 85254548 -36589308 - IAPEz-int LTR ERVK -4933 1548 1359 7 1235 3624 65 1 16 chr11 85254548 85255126 -36588730 - IAPEz-int LTR ERVK -5819 662 168 7 1235 242 327 0 0 chr11 85255126 85255181 -36588675 - RLTR27 LTR ERVK -34 275 221 7 1235 1117 104 10 85 chr11 85255181 85255381 -36588475 - IAPEz-int LTR ERVK -6288 193 9 7 1235 3459 28 46 2 chr11 85255382 85255776 -36588080 - IAPLTR2a LTR ERVK 0 411 1 7 1235 3686 42 0 0 chr11 85255776 85256210 -36587646 + L1Md_F2 LINE L1 5153 5586 -297 7 1235 8563 52 4 0 chr11 85256210 85257201 -36586655 + L1Md_F2 LINE L1 5587 6581 -1 7 1235 387 60 0 0 chr11 85257311 85257361 -36586495 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1235 1078 152 45 15 chr11 85257361 85257562 -36586294 - L1_Mur3 LINE L1 -1517 4363 4157 7 1235 215 325 50 0 chr11 85258801 85258823 -36585033 - RSINE1 SINE B4 -64 101 18 7 1235 339 155 35 0 chr11 85258823 85258881 -36584975 - B3A SINE B2 -122 76 17 7 1235 276 208 281 0 chr11 85259068 85259164 -36584692 - Lx8 LINE L1 -666 6807 6685 7 1235 2198 60 0 29 chr11 85259165 85259440 -36584416 + L1_Mus1 LINE L1 6301 6567 0 7 1235 255 125 0 0 chr11 85259446 85259486 -36584370 + (GAA)n Simple_repeat Simple_repeat 3 42 0 7 1235 629 259 7 34 chr11 85259486 85259634 -36584222 - Lx8 LINE L1 -782 6691 6548 7 1235 250 45 22 22 chr11 85259655 85259700 -36584156 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1235 384 256 234 0 chr11 85259735 85259872 -36583984 - Lx8 LINE L1 -1093 6380 6212 7 1235 317 245 92 41 chr11 85260000 85260098 -36583758 - PB1D9 SINE Alu -13 107 5 7 1235 702 303 105 33 chr11 85260535 85260997 -36582859 - L1MB4 LINE L1 -167 6013 5509 7 1235 645 284 144 12 chr11 85261245 85261501 -36582355 + B4A SINE B4 1 290 -2 7 1235 1083 158 72 64 chr11 85261813 85262063 -36581793 - MTC LTR MaLR -102 319 68 7 1235 183 80 0 0 chr11 85262063 85262088 -36581768 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1235 438 241 43 61 chr11 85262156 85262193 -36581663 - MTC LTR MaLR -306 113 81 7 1235 4115 92 36 4 chr11 85262193 85262746 -36581110 - L1_Mus3 LINE L1 -4 6634 6064 7 1235 497 117 39 0 chr11 85262746 85262823 -36581033 - MTC LTR MaLR -341 80 1 7 1235 22 35 0 0 chr11 85263667 85263696 -36580160 + AT_rich Low_complexity Low_complexity 1 29 0 7 1235 261 265 36 0 chr11 85264927 85265010 -36578846 - PB1D9 SINE Alu -32 88 3 7 1235 263 352 9 0 chr11 85265664 85265772 -36578084 - PB1D10 SINE Alu 0 117 9 7 1235 207 0 0 0 chr11 85267086 85267109 -36576747 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1235 321 261 164 9 chr11 85267990 85268106 -36575750 + ID_B1 SINE B4 84 217 -7 7 1235 243 290 16 0 chr11 85268587 85268649 -36575207 - ID4_ SINE ID -4 79 17 7 1235 259 326 54 11 chr11 85268671 85268764 -36575092 - B1F2 SINE Alu -52 97 1 7 1235 207 100 0 0 chr11 85269681 85269711 -36574145 + (TCC)n Simple_repeat Simple_repeat 3 32 0 7 1235 22 0 0 0 chr11 85269711 85269733 -36574123 + AT_rich Low_complexity Low_complexity 1 22 0 7 1235 266 209 177 52 chr11 85270029 85270125 -36573731 - PB1D10 SINE Alu -7 110 3 7 1235 771 112 0 0 chr11 85272555 85272671 -36571185 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 7 1235 959 102 0 74 chr11 85272671 85272820 -36571036 - B1_Mus1 SINE Alu -9 139 2 7 1235 28 61 0 0 chr11 85273112 85273161 -36570695 + AT_rich Low_complexity Low_complexity 1 49 0 7 1235 25 51 0 0 chr11 85273207 85273246 -36570610 + AT_rich Low_complexity Low_complexity 1 39 0 7 1235 186 43 0 0 chr11 85273364 85273387 -36570469 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1235 254 276 13 13 chr11 85273388 85273465 -36570391 + CT-rich Low_complexity Low_complexity 2 78 0 8 1235 218 282 73 49 chr11 85273466 85273548 -36570308 - PB1D10 SINE Alu -15 102 19 8 1235 579 40 0 0 chr11 85274046 85274120 -36569736 + (CAAAC)n Simple_repeat Simple_repeat 5 78 0 8 1235 597 233 59 15 chr11 85274384 85274519 -36569337 + B1F SINE Alu 9 149 0 8 1235 238 291 155 0 chr11 85274834 85274937 -36568919 - PB1D7 SINE Alu -1 119 1 8 1235 505 287 70 6 chr11 85274937 85275014 -36568842 - ID SINE ID -135 89 3 8 1235 618 259 94 11 chr11 85276772 85276952 -36566904 - B3 SINE B2 -21 195 1 8 1235 861 179 14 0 chr11 85277078 85277223 -36566633 - B1_Mus2 SINE Alu 0 147 1 8 1235 523 330 32 16 chr11 85277281 85277469 -36566387 - B3A SINE B2 -6 192 2 8 1235 232 294 0 115 chr11 85277566 85277662 -36566194 + B1_Mus2 SINE Alu 1 85 -62 8 1235 1689 31 0 0 chr11 85279186 85279379 -36564477 + B2_Mm1t SINE B2 1 193 0 8 1235 777 199 7 14 chr11 85279390 85279538 -36564318 + B1_Mur2 SINE Alu 2 148 -1 8 1235 246 331 89 16 chr11 85279867 85279952 -36563904 + B1F2 SINE Alu 1 85 -64 8 1235 1408 138 220 0 chr11 85279952 85280220 -36563636 - ORR1A2 LTR MaLR 0 327 1 8 1235 246 331 89 16 chr11 85280220 85280257 -36563599 + B1F2 SINE Alu 86 132 -17 8 1235 263 192 0 13 chr11 85280709 85280788 -36563068 + (TA)n Simple_repeat Simple_repeat 2 79 0 8 1235 267 227 305 0 chr11 85281698 85281826 -36562030 - B4A SINE B4 -3 289 123 8 1235 272 280 77 85 chr11 85281967 85282110 -36561746 - B3A SINE B2 -2 214 74 8 1235 180 0 0 0 chr11 85282520 85282540 -36561316 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1235 487 354 83 0 chr11 85282543 85282687 -36561169 - RSINE1 SINE B4 -8 157 2 8 1235 24 53 0 0 chr11 85283025 85283063 -36560793 + AT_rich Low_complexity Low_complexity 1 38 0 8 1235 483 274 60 0 chr11 85285609 85285726 -36558130 + B1F SINE Alu 10 133 -16 8 1235 511 216 20 0 chr11 85286084 85286186 -36557670 - ID_B1 SINE B4 0 224 121 8 1235 22 0 0 0 chr11 85286450 85286472 -36557384 + AT_rich Low_complexity Low_complexity 1 22 0 8 1235 591 298 92 53 chr11 85286472 85286734 -36557122 + B4A SINE B4 1 272 -20 8 1235 269 306 139 30 chr11 85286846 85286940 -36556916 + PB1 SINE Alu 4 109 -18 8 1235 206 0 0 65 chr11 85286940 85286971 -36556885 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 8 1235 240 265 44 0 chr11 85287319 85287387 -36556469 - B1F1 SINE Alu -77 72 2 8 1235 22 0 0 0 chr11 85288662 85288684 -36555172 + AT_rich Low_complexity Low_complexity 1 22 0 8 1235 315 164 0 0 chr11 85289390 85289451 -36554405 + GA-rich Low_complexity Low_complexity 1 61 0 8 1235 318 235 90 20 chr11 85290756 85290856 -36553000 - PB1D10 SINE Alu -8 109 3 8 1235 207 100 0 0 chr11 85291598 85291628 -36552228 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 8 1235 354 160 15 30 chr11 85291805 85291940 -36551916 + (TCTG)n Simple_repeat Simple_repeat 2 134 0 8 1235 491 184 25 50 chr11 85293229 85293349 -36550507 - B1_Mur1 SINE Alu -1 148 32 8 1235 274 263 85 131 chr11 85293270 85293506 -36550350 - RLTR25B LTR ERVK -521 507 283 8 1235 291 286 75 21 chr11 85293810 85293903 -36549953 + ID_B1 SINE B4 119 216 -8 8 1235 901 168 15 64 chr11 85293982 85294185 -36549671 - B2_Mm2 SINE B2 -2 193 1 8 1235 230 255 0 0 chr11 85294383 85294430 -36549426 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1235 294 398 0 0 chr11 85294431 85294539 -36549317 - PB1D10 SINE Alu -9 108 1 8 1235 495 288 21 14 chr11 85294830 85294971 -36548885 - RSINE1 SINE B4 -14 151 10 8 1235 457 204 154 10 chr11 85295687 85295791 -36548065 + RSINE1 SINE B4 10 128 -37 8 1235 529 238 159 0 chr11 85296317 85296468 -36547388 + B3A SINE B2 1 175 -23 8 1235 1082 76 0 27 chr11 85296820 85296969 -36546887 + B1_Mus1 SINE Alu 2 146 -2 8 1235 339 96 0 0 chr11 85298607 85298659 -36545197 + (TA)n Simple_repeat Simple_repeat 1 52 0 8 1235 649 263 76 15 chr11 85299404 85299601 -36544255 - B3 SINE B2 0 216 8 8 1235 216 185 0 0 chr11 85299936 85299990 -36543866 + T-rich Low_complexity Low_complexity 1 54 0 8 1235 1189 54 0 0 chr11 85299992 85300140 -36543716 - B1_Mus1 SINE Alu 0 148 1 8 1235 415 294 19 39 chr11 85301983 85302212 -36541644 + B4A SINE B4 8 264 -28 8 1235 198 0 0 0 chr11 85302228 85302250 -36541606 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1235 316 252 9 37 chr11 85303071 85303178 -36540678 + CT-rich Low_complexity Low_complexity 2 105 0 8 1235 536 248 30 30 chr11 85303178 85303311 -36540545 - B1_Mur1 SINE Alu -14 135 3 8 1235 331 321 14 54 chr11 85303311 85303326 -36540530 - ID_B1 SINE B4 -14 210 69 8 1235 21 57 0 0 chr11 85303433 85303468 -36540388 + AT_rich Low_complexity Low_complexity 1 35 0 8 1235 528 111 0 0 chr11 85306591 85306672 -36537184 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 8 1235 484 262 110 0 chr11 85307261 85307406 -36536450 + U1 snRNA snRNA 2 162 -3 8 1235 253 221 40 187 chr11 85307496 85307507 -36536349 + B4A SINE B4 119 144 -148 8 1235 758 50 0 0 chr11 85307507 85307607 -36536249 + B1_Mus2 SINE Alu 42 141 -6 8 1235 253 221 40 187 chr11 85307607 85307646 -36536210 + B4A SINE B4 145 246 -46 8 1235 375 78 0 0 chr11 85307646 85307697 -36536159 + (GGA)n Simple_repeat Simple_repeat 1 51 0 8 1235 325 299 16 79 chr11 85308565 85308692 -36535164 - PB1D9 SINE Alu -1 119 1 8 1235 601 313 153 35 chr11 85308790 85309045 -36534811 - B4 SINE B4 -2 290 6 8 1235 402 307 94 41 chr11 85309665 85309835 -36534021 + B3A SINE B2 2 180 -18 8 1235 645 203 24 8 chr11 85310077 85310201 -36533655 - ID_B1 SINE B4 -8 216 91 8 1235 822 195 0 13 chr11 85310359 85310510 -36533346 - B1_Mur4 SINE Alu 0 150 2 8 1235 183 42 0 0 chr11 85310755 85310779 -36533077 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1235 1185 69 0 0 chr11 85310784 85310929 -36532927 - B1_Mus2 SINE Alu 0 147 3 8 1235 259 292 12 29 chr11 85311118 85311224 -36532632 - ID4 SINE ID -47 105 2 8 1235 249 184 92 11 chr11 85311584 85311662 -36532194 - B1F SINE Alu -8 141 21 8 1235 276 229 16 0 chr11 85313725 85313786 -36530070 + ID SINE ID 1 62 -162 8 1235 449 264 77 8 chr11 85314080 85314210 -36529646 + B1F2 SINE Alu 1 139 -10 8 1235 348 314 57 21 chr11 85314286 85314478 -36529378 + L1MD LINE L1 5002 5200 -946 8 1235 589 208 109 11 chr11 85314548 85314723 -36529133 - MTEb LTR MaLR -4 375 184 8 1235 215 152 0 21 chr11 85314732 85314779 -36529077 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1235 419 309 57 79 chr11 85316292 85316608 -36527248 - L1MD2 LINE L1 -16 6343 6035 8 1235 1637 11 11 0 chr11 85316657 85316841 -36527015 + B2_Mm1a SINE B2 1 186 -7 8 1235 22 35 0 0 chr11 85316848 85316877 -36526979 + AT_rich Low_complexity Low_complexity 1 29 0 8 1235 403 228 69 10 chr11 85316913 85317015 -36526841 - PB1D10 SINE Alu -9 108 1 8 1235 23 0 0 0 chr11 85317015 85317038 -36526818 + AT_rich Low_complexity Low_complexity 1 23 0 8 1235 192 77 0 0 chr11 85317149 85317175 -36526681 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 8 1235 325 299 151 36 chr11 85317702 85317841 -36526015 - HAL1-3A_ME LINE L1 -419 2439 2285 8 1235 469 288 4 11 chr11 85317864 85318144 -36525712 + C-rich Low_complexity Low_complexity 1 277 0 8 1235 444 100 0 134 chr11 85318141 85318459 -36525397 + CT-rich Low_complexity Low_complexity 1 275 0 8 1235 301 294 104 24 chr11 85318662 85318826 -36525030 - L1M4 LINE L1 -3185 2961 2785 8 1235 22 0 0 0 chr11 85318908 85318930 -36524926 + AT_rich Low_complexity Low_complexity 1 22 0 8 1235 24 32 0 0 chr11 85319626 85319657 -36524199 + AT_rich Low_complexity Low_complexity 1 31 0 8 1235 388 198 51 59 chr11 85319967 85320085 -36523771 - B1_Mur4 SINE Alu -1 149 33 8 1235 216 0 0 0 chr11 85320670 85320694 -36523162 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1235 907 286 86 13 chr11 85320875 85321176 -36522680 - MTEa LTR MaLR -6 373 51 8 1235 423 0 0 0 chr11 85321311 85321358 -36522498 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1235 232 267 51 39 chr11 85322023 85322101 -36521755 - PB1D7 SINE Alu -4 116 38 8 1235 437 335 52 52 chr11 85322347 85322637 -36521219 - B4A SINE B4 0 292 3 8 1235 257 340 10 10 chr11 85324224 85324325 -36519531 - PB1D10 SINE Alu -15 102 2 8 1235 26 0 0 0 chr11 85325066 85325092 -36518764 + AT_rich Low_complexity Low_complexity 1 26 0 8 1235 189 0 0 0 chr11 85325545 85325566 -36518290 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1235 955 62 131 0 chr11 85325566 85325696 -36518160 - B1_Mus2 SINE Alu 0 147 1 8 1235 401 283 99 20 chr11 85327238 85327339 -36516517 - RSINE1 SINE B4 -2 163 55 8 1235 28 0 0 0 chr11 85327516 85327544 -36516312 + AT_rich Low_complexity Low_complexity 1 28 0 8 1235 28 0 0 0 chr11 85327629 85327657 -36516199 + AT_rich Low_complexity Low_complexity 1 28 0 8 1235 391 262 37 9 chr11 85327755 85327863 -36515993 + PB1D9 SINE Alu 4 114 -6 8 1236 210 219 24 0 chr11 85329004 85329045 -36514811 - ID2 SINE ID 0 83 42 8 1236 219 348 43 63 chr11 85329139 85329274 -36514582 + MIRb SINE MIR 84 232 -30 8 1236 254 250 0 0 chr11 85329568 85329624 -36514232 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1236 217 281 53 63 chr11 85329913 85330008 -36513848 - B1F1 SINE Alu -19 130 37 9 1236 247 315 73 18 chr11 85330884 85330994 -36512862 + B4A SINE B4 76 191 -101 9 1236 393 239 21 42 chr11 85330907 85331003 -36512853 + PB1D7 SINE Alu 18 111 -9 9 1236 359 309 71 22 chr11 85331176 85331358 -36512498 + B4A SINE B4 99 289 -3 9 1236 28 29 0 0 chr11 85331550 85331585 -36512271 + AT_rich Low_complexity Low_complexity 1 35 0 9 1236 23 33 0 0 chr11 85332731 85332761 -36511095 + AT_rich Low_complexity Low_complexity 1 30 0 9 1236 488 297 0 0 chr11 85332788 85332899 -36510957 + B3 SINE B2 17 127 -89 9 1236 183 42 0 0 chr11 85332913 85332937 -36510919 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1236 1205 61 0 7 chr11 85333064 85333213 -36510643 + B1_Mus1 SINE Alu 1 148 0 9 1236 21 57 0 0 chr11 85334849 85334884 -36508972 + AT_rich Low_complexity Low_complexity 1 35 0 9 1236 513 234 35 49 chr11 85334953 85335097 -36508759 - ID_B1 SINE B4 -4 220 79 9 1236 212 338 0 39 chr11 85335193 85335270 -36508586 + ID_B1 SINE B4 91 164 -60 9 1236 377 286 43 0 chr11 85335673 85335809 -36508047 - B1F1 SINE Alu 0 149 9 9 1236 1174 68 0 7 chr11 85336187 85336335 -36507521 + B1_Mus2 SINE Alu 1 147 0 9 1236 194 105 0 26 chr11 85337431 85337470 -36506386 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 9 1236 22 94 0 0 chr11 85337533 85337597 -36506259 + AT_rich Low_complexity Low_complexity 1 64 0 9 1236 226 316 147 0 chr11 85340432 85340527 -36503329 - PB1D9 SINE Alu -10 110 2 9 1236 427 312 39 15 chr11 85341328 85341458 -36502398 - B4 SINE B4 -83 209 77 9 1236 686 197 7 50 chr11 85341619 85341758 -36502098 - B3 SINE B2 0 216 84 9 1236 442 291 79 23 chr11 85341817 85342120 -36501736 - L1M2 LINE L1 -1429 4714 4395 9 1236 244 272 12 36 chr11 85342120 85342204 -36501652 + CT-rich Low_complexity Low_complexity 4 85 0 9 1236 641 301 48 5 chr11 85342207 85342414 -36501442 - ID_B1 SINE B4 -6 218 3 9 1236 1155 65 0 14 chr11 85342977 85343118 -36500738 + B1_Mus2 SINE Alu 1 139 -8 9 1236 335 259 37 0 chr11 85343245 85343326 -36500530 + B1F1 SINE Alu 13 96 -53 9 1236 206 62 31 0 chr11 85343333 85343365 -36500491 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 9 1236 614 324 64 36 chr11 85344635 85344885 -36498971 + B4A SINE B4 24 280 -12 9 1236 450 302 54 8 chr11 85345087 85345217 -36498639 - RSINE1 SINE B4 -29 136 1 9 1236 204 122 0 0 chr11 85346724 85346765 -36497091 + (T)n Simple_repeat Simple_repeat 1 41 0 9 1236 1239 51 0 0 chr11 85346892 85347030 -36496826 - B1_Mus2 SINE Alu -8 139 2 9 1236 765 225 117 32 chr11 85347559 85347747 -36496109 + B3 SINE B2 3 206 -10 9 1236 389 187 27 0 chr11 85347759 85347834 -36496022 + PB1D9 SINE Alu 24 100 -20 9 1236 1317 174 40 29 chr11 85348083 85348361 -36495495 - ORR1C2 LTR MaLR -6 378 98 9 1236 6052 207 75 16 chr11 85348860 85348906 -36494950 - Lx5 LINE L1 -1 7049 7007 9 1236 1838 143 42 65 chr11 85348906 85349243 -36494613 + ORR1A4 LTR MaLR 1 329 0 9 1236 6052 207 75 16 chr11 85349243 85350481 -36493375 - Lx5 LINE L1 -44 7006 5690 9 1236 408 40 0 0 chr11 85350857 85350907 -36492949 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 9 1236 271 320 50 20 chr11 85350926 85351025 -36492831 - PB1D10 SINE Alu -15 102 1 9 1236 286 248 204 25 chr11 85351037 85351194 -36492662 - B3A SINE B2 -13 185 1 9 1236 226 333 0 0 chr11 85352550 85352613 -36491243 + ID4 SINE ID 15 77 -6 9 1236 938 123 0 6 chr11 85352614 85352777 -36491079 + (GGAA)n Simple_repeat Simple_repeat 1 162 0 9 1236 360 227 148 0 chr11 85354490 85354578 -36489278 + PB1 SINE Alu 6 106 -21 9 1236 473 220 101 0 chr11 85354656 85354765 -36489091 - B3 SINE B2 -96 120 1 9 1236 180 0 0 0 chr11 85355757 85355777 -36488079 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 9 1236 1107 97 7 0 chr11 85355935 85356080 -36487776 - B1_Mus2 SINE Alu 0 147 2 9 1236 382 160 142 0 chr11 85356217 85356308 -36487548 - B1_Mur4 SINE Alu 0 120 19 9 1236 228 35 0 0 chr11 85357662 85357691 -36486165 + (CTTTG)n Simple_repeat Simple_repeat 1 29 0 9 1236 375 219 10 79 chr11 85358296 85358412 -36485444 - PB1D9 SINE Alu -40 109 1 9 1236 338 315 19 45 chr11 85358528 85358672 -36485184 + PB1D10 SINE Alu 6 143 -6 9 1236 423 247 7 69 chr11 85359962 85360082 -36483774 - B1F SINE Alu -9 140 24 9 1236 26 30 0 0 chr11 85360476 85360509 -36483347 + AT_rich Low_complexity Low_complexity 1 33 0 9 1236 184 186 100 17 chr11 85362101 85362161 -36481695 - L2 LINE L2 -921 2498 2434 9 1236 1310 107 17 6 chr11 85362500 85362678 -36481178 + B2_Mm2 SINE B2 2 181 -14 9 1236 624 308 59 79 chr11 85362914 85363098 -36480758 + B4A SINE B4 39 224 -68 9 1236 393 22 0 0 chr11 85363098 85363144 -36480712 + (CAG)n Simple_repeat Simple_repeat 1 46 0 9 1236 624 308 59 79 chr11 85363144 85363213 -36480643 + B4A SINE B4 225 287 -5 9 1236 255 31 0 0 chr11 85363772 85363804 -36480052 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1236 5759 87 10 20 chr11 85364579 85365364 -36478492 - Lx3_Mus LINE L1 -1 7008 6232 9 1236 9638 66 9 8 chr11 85365364 85366899 -36476957 + Lx3_Mus LINE L1 4672 6213 -796 9 1236 318 248 26 87 chr11 85367384 85367499 -36476357 - PB1 SINE Alu -19 108 1 9 1236 405 58 0 0 chr11 85367901 85367953 -36475903 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 1236 356 244 158 8 chr11 85368106 85368226 -36475630 - B1_Mm SINE Alu -7 140 3 9 1236 234 0 0 0 chr11 85368431 85368457 -36475399 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1236 350 289 148 0 chr11 85368467 85368602 -36475254 - B3A SINE B2 -31 167 13 9 1236 228 35 0 0 chr11 85368677 85368706 -36475150 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1236 455 255 241 6 chr11 85368845 85369007 -36474849 - B3 SINE B2 -16 200 1 9 1236 182 191 21 0 chr11 85369089 85369136 -36474720 + GA-rich Low_complexity Low_complexity 2 49 0 9 1236 231 36 0 0 chr11 85369143 85369171 -36474685 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1236 228 67 0 0 chr11 85369942 85369972 -36473884 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1236 211 47 22 65 chr11 85370237 85370283 -36473573 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 9 1236 326 296 261 1 chr11 85371305 85371612 -36472244 - L1MB7 LINE L1 -147 6037 5654 9 1236 784 146 63 35 chr11 85372777 85372919 -36470937 - B1_Mus2 SINE Alu 0 147 2 9 1236 1051 121 7 13 chr11 85373464 85373615 -36470241 - B1_Mur4 SINE Alu 0 150 1 9 1236 215 364 15 29 chr11 85373947 85374015 -36469841 - ID4_ SINE ID -10 73 7 9 1236 411 21 0 0 chr11 85374392 85374440 -36469416 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1236 1065 135 14 0 chr11 85375299 85375447 -36468409 + B1_Mur4 SINE Alu 1 150 0 9 1236 621 213 25 0 chr11 85375499 85375627 -36468229 + B3A SINE B2 2 148 -47 9 1236 450 0 0 0 chr11 85375627 85375677 -36468179 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1236 401 242 156 12 chr11 85375677 85375715 -36468141 + B2_Mm2 SINE B2 149 192 -3 9 1236 273 228 36 90 chr11 85376161 85376272 -36467584 + L1MD2 LINE L1 5816 5920 -439 9 1236 1722 31 0 20 chr11 85376388 85376585 -36467271 + B2_Mm1t SINE B2 1 193 0 9 1236 517 318 22 38 chr11 85376594 85376777 -36467079 - B3A SINE B2 -16 182 3 9 1236 512 278 118 32 chr11 85376815 85377116 -36466740 - MTD LTR MaLR -20 399 1 9 1236 860 279 90 44 chr11 85377135 85377363 -36466493 - MTD-int LTR MaLR -18 1240 1000 9 1236 1038 113 137 12 chr11 85377363 85377524 -36466332 + B2_Mm2 SINE B2 1 181 -14 9 1236 860 279 90 44 chr11 85377524 85377685 -36466171 - MTD-int LTR MaLR -259 999 834 9 1236 327 49 0 0 chr11 85377685 85377726 -36466130 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1236 585 168 0 0 chr11 85378066 85378173 -36465683 + (TA)n Simple_repeat Simple_repeat 2 108 0 9 1236 306 132 0 0 chr11 85378514 85378567 -36465289 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1236 639 39 0 0 chr11 85379274 85379352 -36464504 + (TC)n Simple_repeat Simple_repeat 2 79 0 9 1236 452 232 35 26 chr11 85381495 85381610 -36462246 + B3 SINE B2 1 116 -100 9 1236 184 289 78 13 chr11 85381967 85382044 -36461812 + MIRb SINE MIR 133 214 -54 9 1236 874 130 161 7 chr11 85382127 85382282 -36461574 - B2_Mm2 SINE B2 -15 180 2 9 1236 231 114 0 0 chr11 85382291 85382326 -36461530 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1236 203 162 0 0 chr11 85383984 85384021 -36459835 + CT-rich Low_complexity Low_complexity 2 38 0 9 1236 320 94 19 0 chr11 85384022 85384075 -36459781 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 9 1236 227 319 14 14 chr11 85384123 85384193 -36459663 - ID4_ SINE ID -13 70 1 9 1236 739 207 107 30 chr11 85386429 85386598 -36457258 + B3 SINE B2 29 210 -6 9 1236 532 320 33 33 chr11 85386741 85386951 -36456905 + B3 SINE B2 1 210 -6 9 1236 839 216 129 16 chr11 85387640 85387833 -36456023 - B3 SINE B2 0 216 2 9 1236 219 214 0 0 chr11 85388089 85388131 -36455725 + C-rich Low_complexity Low_complexity 1 42 0 9 1236 342 0 0 0 chr11 85388827 85388865 -36454991 + (TCC)n Simple_repeat Simple_repeat 2 39 0 9 1236 279 28 0 0 chr11 85389282 85389318 -36454538 + U2 snRNA snRNA 1 36 -152 9 1236 302 308 20 153 chr11 85389350 85389553 -36454303 + ID_B1 SINE B4 1 176 -48 9 1236 383 205 0 49 chr11 85389489 85389571 -36454285 + PB1D9 SINE Alu 35 112 -8 9 1236 246 221 147 0 chr11 85389568 85389636 -36454220 + ID_B1 SINE B4 145 222 -2 9 1236 270 0 0 0 chr11 85390007 85390037 -36453819 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1236 2268 171 23 19 chr11 85390508 85390924 -36452932 + Lx5 LINE L1 6591 7050 0 1 1236 669 211 63 53 chr11 85392389 85392579 -36451277 + B3A SINE B2 2 193 -5 1 1236 4956 214 80 13 chr11 85392969 85394155 -36449701 - Lx9 LINE L1 -6 7638 6373 1 1236 30 27 0 0 chr11 85394160 85394197 -36449659 + AT_rich Low_complexity Low_complexity 1 37 0 1 1236 505 333 18 24 chr11 85394197 85394366 -36449490 - B3A SINE B2 -30 168 1 1 1236 397 259 25 25 chr11 85395374 85395493 -36448363 + PB1D9 SINE Alu 1 119 -1 1 1236 443 239 48 26 chr11 85395741 85395868 -36447988 - B1F SINE Alu -3 146 17 1 1236 547 209 22 44 chr11 85396846 85396975 -36446881 + B1_Mur2 SINE Alu 2 129 -20 1 1236 279 0 0 0 chr11 85396975 85397006 -36446850 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1236 1283 102 11 0 chr11 85398687 85398863 -36444993 + B2_Mm1t SINE B2 2 179 -14 1 1236 437 91 308 60 chr11 85398910 85399027 -36444829 + B2_Mm2 SINE B2 47 192 -3 1 1236 198 0 0 0 chr11 85399274 85399296 -36444560 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1236 1200 73 18 0 chr11 85399796 85399961 -36443895 - B2_Mm2 SINE B2 -26 169 2 1 1236 912 239 14 9 chr11 85400697 85400912 -36442944 + B3 SINE B2 1 216 0 1 1236 315 0 0 0 chr11 85401096 85401131 -36442725 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1236 271 266 10 69 chr11 85402877 85402978 -36440878 + PB1 SINE Alu 32 126 -1 1 1236 241 304 153 60 chr11 85403401 85403493 -36440363 + Charlie1a DNA MER1_type 435 545 -910 1 1236 189 0 0 0 chr11 85403493 85403514 -36440342 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1236 1134 73 0 0 chr11 85403514 85403651 -36440205 - B1_Mus2 SINE Alu -10 137 1 1 1236 241 304 153 60 chr11 85403651 85403924 -36439932 + Charlie1a DNA MER1_type 546 834 -621 1 1236 356 340 0 0 chr11 85404134 85404228 -36439628 + PB1D10 SINE Alu 1 94 -23 1 1236 908 95 0 104 chr11 85404238 85404402 -36439454 + B1_Mus1 SINE Alu 2 148 0 1 1236 1207 48 7 0 chr11 85404685 85404830 -36439026 + B1_Mus2 SINE Alu 1 146 -1 1 1236 272 48 0 23 chr11 85404835 85404878 -36438978 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1236 219 253 25 74 chr11 85404956 85404991 -36438865 - RSINE1 SINE B4 -87 78 2 1 1236 257 48 0 87 chr11 85404991 85405037 -36438819 - B3 SINE B2 -174 42 1 1 1236 1524 53 21 0 chr11 85405424 85405612 -36438244 - B2_Mm1a SINE B2 0 193 2 1 1236 23 0 0 0 chr11 85405614 85405637 -36438219 + AT_rich Low_complexity Low_complexity 1 23 0 1 1236 284 190 35 92 chr11 85405745 85405808 -36438048 + PB1D10 SINE Alu 36 101 -16 1 1236 1520 186 65 91 chr11 85405808 85405990 -36437866 + ORR1D1 LTR MaLR 1 194 -180 1 1236 1138 66 0 0 chr11 85405990 85406127 -36437729 + B1_Mus1 SINE Alu 2 138 -10 1 1236 1520 186 65 91 chr11 85406127 85406328 -36437528 + ORR1D1 LTR MaLR 195 374 0 1 1236 284 190 35 92 chr11 85406328 85406351 -36437505 + PB1D10 SINE Alu 102 117 0 1 1236 417 20 0 0 chr11 85407578 85407628 -36436228 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1236 228 86 0 0 chr11 85407662 85407697 -36436159 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1236 242 265 265 0 chr11 85408230 85408313 -36435543 + RSINE1 SINE B4 3 107 -58 1 1236 669 270 110 11 chr11 85408659 85408850 -36435006 + B3 SINE B2 1 210 -6 1 1236 1032 62 0 0 chr11 85409129 85409258 -36434598 + B1_Mus1 SINE Alu 1 129 -19 1 1236 688 55 43 60 chr11 85409764 85409867 -36433989 + B1_Mus1 SINE Alu 35 140 -8 1 1236 180 0 0 0 chr11 85409867 85409887 -36433969 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1236 688 55 43 60 chr11 85409887 85409899 -36433957 + B1_Mus1 SINE Alu 141 148 0 1 1236 531 0 0 0 chr11 85410319 85410378 -36433478 + (GAAAA)n Simple_repeat Simple_repeat 3 61 0 1 1236 830 229 23 50 chr11 85410601 85410822 -36433034 - B3 SINE B2 -1 215 1 1 1236 321 287 130 0 chr11 85411643 85411758 -36432098 + B1_Mur2 SINE Alu 15 144 -5 1 1236 436 263 210 0 chr11 85412027 85412072 -36431784 + ID_B1 SINE B4 10 223 -1 1 1236 338 271 45 76 chr11 85412072 85412204 -36431652 + B1F SINE Alu 21 148 -1 1 1236 856 130 58 0 chr11 85412211 85412349 -36431507 + B1_Mus2 SINE Alu 1 146 -1 1 1236 448 198 105 90 chr11 85412925 85413058 -36430798 + B3 SINE B2 79 213 -3 1 1236 630 284 15 35 chr11 85414374 85414571 -36429285 + B3A SINE B2 5 197 -1 1 1236 342 0 0 0 chr11 85415236 85415274 -36428582 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1236 235 329 0 0 chr11 85415284 85415354 -36428502 + ID SINE ID 2 71 -153 1 1236 457 134 192 67 chr11 85415611 85415731 -36428125 + B1_Mm SINE Alu 13 147 0 1 1236 1016 87 7 0 chr11 85415737 85415886 -36427970 + (GA)n Simple_repeat Simple_repeat 2 151 0 1 1236 423 307 43 48 chr11 85416644 85416853 -36427003 - L1MD2 LINE L1 -323 6036 5829 1 1236 407 244 78 39 chr11 85416928 85417056 -36426800 - L1MD2 LINE L1 -531 5828 5696 1 1236 334 237 103 0 chr11 85417068 85417165 -36426691 - L1M5 LINE L1 -565 5614 5508 1 1236 611 289 106 24 chr11 85417895 85418271 -36425585 - L1MDa LINE L1 -4377 2256 1850 1 1236 242 183 50 0 chr11 85418274 85418334 -36425522 + L1MA6 LINE L1 6237 6299 -1 1 1236 318 250 12 0 chr11 85418480 85418560 -36425296 + ID4 SINE ID 2 82 -1 1 1236 368 205 84 0 chr11 85418587 85418670 -36425186 + B3A SINE B2 4 93 -105 1 1236 313 216 13 26 chr11 85419006 85419082 -36424774 - PB1 SINE Alu -38 89 15 1 1236 262 294 15 0 chr11 85419153 85419221 -36424635 - PB1D10 SINE Alu -48 69 1 1 1236 229 319 62 0 chr11 85419689 85419802 -36424054 + L1_Mur1 LINE L1 3658 3777 -2109 1 1236 3782 62 6 6 chr11 85420032 85420523 -36423333 - L1_Mus3 LINE L1 -4 6634 6144 1 1236 385 254 123 38 chr11 85420614 85420783 -36423073 + B3 SINE B2 40 194 -1 1 1236 330 200 108 0 chr11 85421026 85421091 -36422765 + B1F1 SINE Alu 29 100 -49 1 1236 273 250 52 13 chr11 85421091 85421103 -36422753 + ID_B1 SINE B4 110 189 -35 1 1236 1209 213 139 52 chr11 85421115 85421502 -36422354 - MTC LTR MaLR 0 421 1 1 1236 336 24 0 0 chr11 85421556 85421597 -36422259 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1236 183 129 0 0 chr11 85421622 85421653 -36422203 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1236 1223 48 7 0 chr11 85421653 85421800 -36422056 - B1_Mus1 SINE Alu 0 148 1 1 1236 1082 86 0 0 chr11 85421870 85422022 -36421834 + B2_Mm2 SINE B2 1 152 -43 1 1236 432 0 0 0 chr11 85422022 85422070 -36421786 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1 1236 420 232 178 83 chr11 85422643 85422840 -36421016 - B3A SINE B2 -9 186 2 1 1236 197 162 0 51 chr11 85423856 85423895 -36419961 + L2b LINE L2 3322 3358 -17 1 1236 225 94 0 0 chr11 85424719 85424751 -36419105 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1236 456 150 0 0 chr11 85427857 85427937 -36415919 + (TCCC)n Simple_repeat Simple_repeat 1 80 0 1 1236 243 0 0 0 chr11 85428296 85428323 -36415533 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1236 28 0 0 0 chr11 85429801 85429829 -36414027 + AT_rich Low_complexity Low_complexity 1 28 0 1 1236 314 273 27 9 chr11 85431495 85431606 -36412250 + PB1D10 SINE Alu 1 113 -35 1 1236 979 128 139 0 chr11 85431732 85431919 -36411937 + URR1A DNA MER1_type 2 214 -12 1 1236 206 324 15 0 chr11 85433936 85434004 -36409852 - MIRm SINE MIR -92 184 116 1 1236 372 282 87 5 chr11 85434176 85434383 -36409473 - L1MA6 LINE L1 -77 6223 6000 1 1236 699 253 0 0 chr11 85434464 85434610 -36409246 + B3A SINE B2 5 150 -48 1 1236 499 325 68 11 chr11 85435446 85435726 -36408130 + MER58B DNA MER1_type 40 335 -6 1 1236 195 42 0 0 chr11 85437665 85437689 -36406167 + (CATATA)n Simple_repeat Simple_repeat 4 27 0 1 1236 352 236 61 35 chr11 85437723 85437837 -36406019 - PB1D10 SINE Alu 0 117 1 1 1236 226 316 20 50 chr11 85438122 85438136 -36405720 + B4A SINE B4 74 84 -208 1 1236 402 264 0 50 chr11 85438136 85438270 -36405586 + B1F SINE Alu 4 126 -23 1 1236 455 221 76 28 chr11 85438358 85438502 -36405354 + Lx7 LINE L1 7546 7696 0 1 1236 265 214 36 0 chr11 85439501 85439557 -36404299 + MTD LTR MaLR 362 419 0 1 1236 195 42 0 0 chr11 85441442 85441466 -36402390 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1236 420 203 0 0 chr11 85442944 85443018 -36400838 - B1_Mur2 SINE Alu -47 102 29 1 1236 225 308 0 60 chr11 85442961 85443044 -36400812 - MT2B LTR ERVL -361 240 163 1 1236 250 377 57 51 chr11 85443514 85443690 -36400166 - B3A SINE B2 -16 182 6 1 1236 325 211 168 53 chr11 85443931 85444026 -36399830 + PB1D7 SINE Alu 1 106 -14 1 1236 2161 179 32 0 chr11 85444027 85444430 -36399426 - MTC LTR MaLR -5 416 1 1 1236 246 211 225 0 chr11 85447454 85447525 -36396331 + URR1A DNA MER1_type 20 106 -120 1 1236 1149 75 7 0 chr11 85447542 85447688 -36396168 - B1_Mus2 SINE Alu 0 147 1 1 1236 1330 66 54 16 chr11 85447715 85447899 -36395957 - B2_Mm2 SINE B2 -3 192 2 1 1236 1109 70 28 0 chr11 85447906 85448048 -36395808 - B1_Mus1 SINE Alu -2 146 1 1 1236 610 145 6 160 chr11 85448048 85448204 -36395652 + URR1A DNA MER1_type 94 225 -1 1 1236 279 245 46 92 chr11 85448204 85448271 -36395585 - CYRA11_Mm Unknown Y-chromosome -442 175 116 1 1236 328 286 38 5 chr11 85448987 85449081 -36394775 + PB1D10 SINE Alu 4 98 -50 1 1236 253 53 0 128 chr11 85449111 85449197 -36394659 + T-rich Low_complexity Low_complexity 4 78 0 1 1236 824 196 0 0 chr11 85449446 85449584 -36394272 + B1_Mur4 SINE Alu 1 138 -12 1 1236 496 240 8 67 chr11 85449630 85449764 -36394092 - RSINE1 SINE B4 -28 137 12 1 1236 504 106 0 0 chr11 85449764 85449849 -36394007 + (T)n Simple_repeat Simple_repeat 1 85 0 1 1236 1177 61 0 0 chr11 85449849 85449996 -36393860 - B1_Mus2 SINE Alu 0 147 1 1 1236 1952 52 0 19 chr11 85450026 85450283 -36393573 - L1Md_F2 LINE L1 -1 6581 6330 1 1236 1167 69 0 7 chr11 85451036 85451175 -36392681 + B1_Mus2 SINE Alu 1 139 -8 1 1236 273 29 0 0 chr11 85451175 85451209 -36392647 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1236 665 176 56 17 chr11 85451294 85451446 -36392410 - B1_Mur4 SINE Alu -2 147 1 1 1236 402 39 0 0 chr11 85451780 85451832 -36392024 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1236 186 43 0 0 chr11 85451841 85451864 -36391992 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1236 21 0 0 0 chr11 85452654 85452675 -36391181 + AT_rich Low_complexity Low_complexity 1 21 0 1 1236 268 143 63 0 chr11 85452874 85452937 -36390919 + GA-rich Low_complexity Low_complexity 4 70 0 1 1236 210 143 0 0 chr11 85453096 85453131 -36390725 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1236 343 194 0 19 chr11 85454307 85454412 -36389444 + CT-rich Low_complexity Low_complexity 1 103 0 1 1236 189 0 0 0 chr11 85456884 85456905 -36386951 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1237 1135 85 6 0 chr11 85459676 85459840 -36384016 - B2_Mm1a SINE B2 -28 165 1 1 1237 294 320 33 0 chr11 85460172 85460294 -36383562 + Tigger14a DNA MER2_type 99 224 -100 1 1237 715 155 8 30 chr11 85460379 85460512 -36383344 - B1_Mur3 SINE Alu 0 149 20 1 1237 387 0 0 0 chr11 85460619 85460662 -36383194 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1237 387 0 0 0 chr11 85460662 85460704 -36383152 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1237 225 0 0 0 chr11 85461680 85461705 -36382151 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1237 621 0 0 0 chr11 85462122 85462191 -36381665 + (TTTCC)n Simple_repeat Simple_repeat 3 71 0 1 1237 817 86 0 0 chr11 85462194 85462310 -36381546 - B1_Mus1 SINE Alu -31 117 2 1 1237 408 184 14 113 chr11 85462310 85462339 -36381517 - MT2B LTR ERVL -449 152 138 1 1237 1358 81 42 21 chr11 85464307 85464497 -36379359 + B2_Mm2 SINE B2 1 194 -1 1 1237 845 203 114 0 chr11 85464581 85464783 -36379073 + URR1B DNA MER1_type 1 225 0 1 1237 1198 49 0 0 chr11 85464792 85464935 -36378921 + B1_Mus2 SINE Alu 5 147 0 1 1237 261 0 0 0 chr11 85464935 85464964 -36378892 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1237 278 180 32 32 chr11 85465005 85465068 -36378788 + L1MEc LINE L1 421 483 -5917 1 1237 1202 54 0 20 chr11 85465162 85465313 -36378543 - B1_Mus1 SINE Alu 0 148 1 1 1237 468 0 0 0 chr11 85465648 85465700 -36378156 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1237 263 93 23 0 chr11 85465700 85465742 -36378114 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1237 611 290 100 23 chr11 85465795 85466356 -36377500 + L1MEc LINE L1 2238 2852 -3467 1 1237 449 209 131 7 chr11 85466974 85467229 -36376627 - L1MA5 LINE L1 -333 5979 5625 1 1237 232 182 73 0 chr11 85467899 85467954 -36375902 + L1MD LINE L1 5199 5257 -889 1 1237 292 301 106 53 chr11 85468058 85468265 -36375591 - ORR1E LTR MaLR -139 220 3 1 1237 436 277 9 2 chr11 85468691 85468812 -36375044 + L1M5 LINE L1 5711 5830 -1955 1 1237 268 280 90 14 chr11 85469337 85469478 -36374378 + B3A SINE B2 23 174 -24 1 1237 223 238 0 0 chr11 85469478 85469520 -36374336 + G-rich Low_complexity Low_complexity 2 43 0 1 1237 223 143 0 97 chr11 85472386 85472448 -36371408 + T-rich Low_complexity Low_complexity 1 56 0 1 1237 605 280 105 61 chr11 85472949 85473310 -36370546 - MTEa LTR MaLR -2 377 1 1 1237 464 108 81 0 chr11 85474693 85474767 -36369089 + BC1_Mm scRNA scRNA 2 81 -71 1 1237 370 245 45 17 chr11 85475142 85475283 -36368573 + L1ME1 LINE L1 5814 5958 -221 1 1237 21 0 0 0 chr11 85475772 85475793 -36368063 + AT_rich Low_complexity Low_complexity 1 21 0 1 1237 240 302 50 30 chr11 85478148 85478247 -36365609 - PB1 SINE Alu 0 127 27 1 1237 9218 2 0 0 chr11 85478819 85479981 -36363875 - L1Md_A LINE L1 0 6582 5420 1 1237 195 100 0 0 chr11 85480764 85480794 -36363062 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 1 1237 810 236 117 47 chr11 85485114 85485392 -36358464 - B4 SINE B4 -14 278 1 1 1237 254 347 0 39 chr11 85485700 85485802 -36358054 + PB1D10 SINE Alu 1 98 -19 1 1237 447 319 62 21 chr11 85485803 85485878 -36357978 + ID_B1 SINE B4 17 92 -132 1 1237 374 215 99 36 chr11 85485878 85485989 -36357867 + PB1D9 SINE Alu 1 118 -2 1 1237 447 319 62 21 chr11 85485989 85486105 -36357751 + ID_B1 SINE B4 93 216 -8 1 1237 221 57 0 28 chr11 85487304 85487340 -36356516 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1237 307 40 32 112 chr11 85487504 85488005 -36355851 + (CTGTG)n Simple_repeat Simple_repeat 1 460 0 1 1237 343 154 0 37 chr11 85488092 85488173 -36355683 + CT-rich Low_complexity Low_complexity 4 81 0 1 1237 279 267 0 0 chr11 85488183 85488243 -36355613 + C-rich Low_complexity Low_complexity 3 62 0 1 1237 486 0 0 0 chr11 85490072 85490126 -36353730 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1237 917 140 12 12 chr11 85491214 85491380 -36352476 - B2_Mm1t SINE B2 0 193 28 1 1237 292 274 10 10 chr11 85493055 85493151 -36350705 + PB1D10 SINE Alu 22 117 0 1 1237 412 223 102 2 chr11 85493150 85493270 -36350586 + B1_Mus2 SINE Alu 1 136 -12 1 1237 878 125 7 0 chr11 85493270 85493414 -36350442 + (GGGA)n Simple_repeat Simple_repeat 4 148 0 1 1237 315 246 227 42 chr11 85493414 85493533 -36350323 + RSINE1 SINE B4 15 155 -10 1 1237 558 329 23 33 chr11 85494185 85494399 -36349457 + B4A SINE B4 36 247 -45 1 1237 839 261 49 67 chr11 85494552 85494819 -36349037 + B4 SINE B4 31 292 0 1 1237 787 222 0 0 chr11 85494852 85494996 -36348860 + B1_Mur4 SINE Alu 1 144 -6 1 1237 336 77 0 0 chr11 85494997 85495049 -36348807 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1237 210 171 0 0 chr11 85495052 85495093 -36348763 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 1237 275 252 113 28 chr11 85496651 85496757 -36347099 - B1F SINE Alu 0 149 35 1 1237 428 269 0 9 chr11 85497824 85497929 -36345927 - PB1 SINE Alu 0 127 24 1 1237 180 0 0 0 chr11 85498754 85498774 -36345082 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1237 365 225 0 24 chr11 85499465 85499547 -36344309 - ID4_ SINE ID -2 81 2 1 1237 321 310 30 15 chr11 85499734 85499865 -36343991 - ORR1E LTR MaLR -44 335 203 1 1237 370 261 0 22 chr11 85499906 85499996 -36343860 - ORR1E LTR MaLR -252 107 20 1 1237 181 0 0 65 chr11 85500282 85500313 -36343543 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1237 216 0 0 0 chr11 85501228 85501252 -36342604 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1237 255 31 0 0 chr11 85501793 85501825 -36342031 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1237 752 168 8 22 chr11 85502257 85502391 -36341465 + B1_Mur1 SINE Alu 1 132 -17 4 1237 225 247 37 49 chr11 85502435 85502516 -36341340 + LTR32 LTR ERVL 272 351 -120 5 1237 227 342 63 0 chr11 85503221 85503300 -36340556 - PB1D7 SINE Alu -19 101 18 6 1237 278 233 0 48 chr11 85503241 85503304 -36340552 - ID_B1 SINE B4 -70 154 95 7 1237 857 181 0 14 chr11 85504019 85504159 -36339697 - B1_Mur2 SINE Alu -1 148 11 8 1237 572 269 97 0 chr11 85504344 85504530 -36339326 - MER33 DNA MER1_type -86 238 35 9 1237 596 248 14 28 chr11 85505558 85505699 -36338157 - B1_Mur1 SINE Alu -6 143 5 1 1237 25 0 0 0 chr11 85505720 85505745 -36338111 + AT_rich Low_complexity Low_complexity 1 25 0 1 1237 623 283 54 22 chr11 85506098 85506282 -36337574 + B3 SINE B2 1 190 -26 1 1237 207 235 14 56 chr11 85506287 85506359 -36337497 + CT-rich Low_complexity Low_complexity 2 70 0 1 1237 1468 144 177 21 chr11 85506615 85506949 -36336907 + RMER10B LTR ERVL 1 386 -12 1 1237 414 0 0 0 chr11 85507045 85507091 -36336765 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1237 505 265 10 10 chr11 85507574 85507620 -36336236 + ID SINE ID 35 80 -144 1 1237 272 355 32 40 chr11 85507620 85507746 -36336110 + PB1 SINE Alu 1 125 -2 1 1237 606 261 14 7 chr11 85510883 85511026 -36332830 + B1_Mur1 SINE Alu 1 144 -5 1 1237 486 88 0 0 chr11 85513133 85513201 -36330655 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1237 194 333 58 0 chr11 85513232 85513301 -36330555 - MIRb SINE MIR -81 187 115 2 1237 305 215 35 0 chr11 85513419 85513489 -36330367 + PB1D7 SINE Alu 2 73 -44 2 1237 613 149 0 66 chr11 85513675 85513797 -36330059 + PB1D9 SINE Alu 5 118 -2 2 1237 1155 235 153 6 chr11 85513905 85514226 -36329630 + ORR1D2 LTR MaLR 1 368 -2 2 1237 719 176 0 8 chr11 85514341 85514467 -36329389 - B1_Mur1 SINE Alu -7 142 18 2 1237 235 116 23 0 chr11 85514530 85514573 -36329283 - RCHARR1 DNA MER1_type -143 831 788 2 1237 505 227 288 0 chr11 85514581 85514744 -36329112 + ID_B1 SINE B4 8 217 -7 2 1237 685 252 98 9 chr11 85514716 85514940 -36328916 - RCHARR1 DNA MER1_type -148 826 583 2 1237 560 150 10 39 chr11 85514940 85515044 -36328812 + MT2B LTR ERVL 1 101 -432 2 1237 621 196 24 41 chr11 85515021 85515192 -36328664 - B3 SINE B2 -3 192 29 2 1237 1073 208 131 31 chr11 85515219 85515535 -36328321 + MT2B LTR ERVL 159 539 -62 2 1237 669 58 0 0 chr11 85515538 85515624 -36328232 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1237 933 299 44 33 chr11 85515628 85516188 -36327668 - RCHARR1 DNA MER1_type -386 588 27 2 1237 381 43 0 0 chr11 85516188 85516235 -36327621 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1237 361 167 0 82 chr11 85516261 85516359 -36327497 - L1Md_F2 LINE L1 0 6582 6493 3 1237 3757 77 0 2 chr11 85516380 85516872 -36326984 + L1_Mm LINE L1 4623 5113 -770 3 1237 213 39 0 0 chr11 85516873 85516899 -36326957 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1237 1171 68 0 0 chr11 85516899 85517045 -36326811 - B1_Mus2 SINE Alu 0 147 2 3 1237 860 101 7 0 chr11 85517106 85517244 -36326612 + (TCTCCC)n Simple_repeat Simple_repeat 3 141 0 3 1237 955 289 149 31 chr11 85517268 85517871 -36325985 - L1MA9 LINE L1 -257 6055 5382 3 1237 381 247 21 0 chr11 85518241 85518334 -36325522 - PB1D10 SINE Alu 0 117 23 3 1237 501 199 34 0 chr11 85518639 85518746 -36325110 - B1_Mm SINE Alu -5 115 4 3 1237 276 237 66 85 chr11 85518652 85518758 -36325098 - MT2B LTR ERVL -346 255 152 3 1237 234 324 0 13 chr11 85518976 85519051 -36324805 + ID4_ SINE ID 5 78 -5 4 1237 2364 127 70 15 chr11 85519055 85519454 -36324402 - MTC LTR MaLR 0 421 1 4 1237 522 297 15 85 chr11 85519655 85519854 -36324002 + ID_B1 SINE B4 3 187 -37 4 1237 716 178 137 0 chr11 85520242 85520388 -36323468 - B3A SINE B2 -17 181 16 4 1237 1092 89 101 0 chr11 85520805 85520974 -36322882 + B2_Mm2 SINE B2 4 189 -6 4 1237 387 277 0 59 chr11 85521846 85521965 -36321891 + PB1 SINE Alu 14 125 -2 4 1237 343 271 0 45 chr11 85523571 85523660 -36320196 + B1_Mur2 SINE Alu 52 136 -13 4 1237 22 0 0 0 chr11 85524279 85524301 -36319555 + AT_rich Low_complexity Low_complexity 1 22 0 4 1237 423 214 119 30 chr11 85524749 85524850 -36319006 - PB1D10 SINE Alu -7 110 1 4 1237 270 221 79 59 chr11 85525346 85525447 -36318409 + PB1D10 SINE Alu 13 115 -2 4 1237 204 188 0 0 chr11 85529346 85529378 -36314478 + G-rich Low_complexity Low_complexity 1 32 0 5 1237 398 282 39 0 chr11 85530989 85531092 -36312764 + ID_B1 SINE B4 82 188 -36 5 1237 243 281 15 15 chr11 85531114 85531179 -36312677 + ID4 SINE ID 2 66 -17 5 1237 240 323 97 0 chr11 85532802 85532926 -36310930 - MIRb SINE MIR -31 237 102 5 1237 255 31 0 0 chr11 85533717 85533749 -36310107 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1237 410 267 25 41 chr11 85534613 85534734 -36309122 + ID_B1 SINE B4 79 197 -27 5 1237 275 182 0 0 chr11 85534980 85535024 -36308832 - B1F2 SINE Alu -97 52 9 5 1237 743 179 64 7 chr11 85535137 85535278 -36308578 + B1_Mur1 SINE Alu 1 149 0 5 1237 256 262 119 0 chr11 85535381 85535465 -36308391 + ID_B1 SINE B4 3 96 -128 5 1237 2285 116 88 8 chr11 85535551 85535916 -36307940 - Lx2 LINE L1 -89 6908 6515 5 1237 260 150 0 36 chr11 85535945 85536012 -36307844 + T-rich Low_complexity Low_complexity 17 80 0 6 1237 1254 48 0 0 chr11 85536012 85536159 -36307697 - B1_Mus2 SINE Alu 0 147 1 6 1237 260 150 0 36 chr11 85536159 85536174 -36307682 + T-rich Low_complexity Low_complexity 2 16 0 6 1237 583 296 59 0 chr11 85536183 85536335 -36307521 - RSINE1 SINE B4 -2 163 3 6 1237 296 208 68 20 chr11 85536598 85536693 -36307163 + B4A SINE B4 133 241 -51 6 1237 486 100 0 29 chr11 85536716 85536819 -36307037 + (CA)n Simple_repeat Simple_repeat 2 101 0 6 1237 204 40 0 0 chr11 85536831 85536856 -36307000 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1237 185 0 40 0 chr11 85538355 85538380 -36305476 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 6 1237 608 256 74 18 chr11 85538403 85538566 -36305290 + B4A SINE B4 44 215 -77 6 1237 531 92 0 0 chr11 85538566 85538653 -36305203 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1237 834 266 147 36 chr11 85538706 85539330 -36304526 - L1MB3 LINE L1 -150 6033 5341 7 1237 233 233 50 0 chr11 85539330 85539390 -36304466 - B1F SINE Alu 0 149 87 7 1237 298 188 91 34 chr11 85539337 85539425 -36304431 - ID_B1 SINE B4 -7 217 125 7 1237 319 317 119 24 chr11 85539592 85539844 -36304012 - L1MB3 LINE L1 -983 5157 4882 7 1237 232 301 83 19 chr11 85539851 85540007 -36303849 + Arthur1 DNA Tip100 3587 3752 -195 7 1237 432 316 153 43 chr11 85540149 85540542 -36303314 - L1MEc LINE L1 -4898 1502 1067 7 1237 301 340 21 0 chr11 85540619 85540713 -36303143 + L1MD LINE L1 4007 4102 -2044 7 1237 594 41 0 0 chr11 85540713 85540786 -36303070 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 7 1237 945 135 28 0 chr11 85540790 85540931 -36302925 - B1_Mur4 SINE Alu -5 145 1 7 1237 480 77 0 0 chr11 85540935 85541000 -36302856 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 7 1237 1017 231 35 0 chr11 85541015 85541218 -36302638 - B3 SINE B2 -6 210 1 7 1237 348 307 77 67 chr11 85541249 85541534 -36302322 + L1MD LINE L1 4148 4436 -1710 7 1237 315 311 85 30 chr11 85541601 85541836 -36302020 + L1MB7 LINE L1 5385 5632 -546 8 1237 289 80 67 22 chr11 85541949 85542039 -36301817 + (TG)n Simple_repeat Simple_repeat 1 94 0 8 1237 467 229 84 0 chr11 85542095 85542226 -36301630 + L1MB7 LINE L1 5686 5827 -357 8 1237 237 338 25 0 chr11 85542262 85542342 -36301514 - ID SINE ID -141 83 2 8 1237 379 281 26 26 chr11 85542345 85542462 -36301394 - PB1D10 SINE Alu 0 117 1 8 1237 446 290 112 28 chr11 85542462 85542749 -36301107 + L1MB7 LINE L1 5818 6128 -50 8 1237 1129 168 119 0 chr11 85542749 85542951 -36300905 - URR1A DNA MER1_type 0 226 1 8 1237 924 232 58 10 chr11 85543972 85544177 -36299679 + ID_B1 SINE B4 1 215 -9 8 1237 288 0 0 0 chr11 85544471 85544503 -36299353 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1237 225 0 0 0 chr11 85544698 85544723 -36299133 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1237 489 237 125 17 chr11 85544821 85544941 -36298915 - B1F SINE Alu -6 143 11 8 1237 242 88 0 0 chr11 85545373 85545407 -36298449 - B3A SINE B2 -164 34 1 8 1237 261 109 0 0 chr11 85545769 85545815 -36298041 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1237 227 157 137 0 chr11 85546402 85546453 -36297403 + PB1D10 SINE Alu 40 97 -20 9 1237 669 291 98 11 chr11 85546695 85546879 -36296977 - ID_B1 SINE B4 -17 207 8 9 1237 251 83 0 0 chr11 85547003 85547039 -36296817 + B1_Mur4 SINE Alu 2 37 -113 9 1237 686 150 200 65 chr11 85548009 85548194 -36295662 + ID_B1 SINE B4 15 224 0 9 1237 24 0 0 0 chr11 85551093 85551117 -36292739 + AT_rich Low_complexity Low_complexity 1 24 0 9 1237 234 299 35 0 chr11 85551742 85551829 -36292027 + L1MC5 LINE L1 7804 7893 -68 9 1237 216 270 15 31 chr11 85552204 85552269 -36291587 - L2b LINE L2 -1 3374 3311 9 1237 405 219 104 0 chr11 85552350 85552446 -36291410 + PB1D10 SINE Alu 3 108 -9 9 1237 21 0 0 0 chr11 85552629 85552650 -36291206 + AT_rich Low_complexity Low_complexity 1 21 0 9 1237 338 225 48 36 chr11 85554557 85554640 -36289216 - ID_B1 SINE B4 -1 223 140 1 1237 385 297 78 8 chr11 85554750 85554879 -36288977 - B4A SINE B4 -90 202 65 1 1237 323 222 16 16 chr11 85555162 85555226 -36288630 + PB1D10 SINE Alu 27 90 -27 1 1237 513 163 426 7 chr11 85555240 85555388 -36288468 + B3 SINE B2 1 210 -6 1 1237 351 289 134 73 chr11 85557511 85557690 -36286166 + B4 SINE B4 4 193 -99 1 1237 269 292 63 63 chr11 85557809 85557904 -36285952 + PB1D7 SINE Alu 24 118 -2 1 1237 210 188 0 20 chr11 85558325 85558374 -36285482 + T-rich Low_complexity Low_complexity 4 51 0 1 1237 501 71 0 0 chr11 85558375 85558445 -36285411 - B1_Mus2 SINE Alu -1 146 77 1 1237 392 348 106 0 chr11 85558754 85558895 -36284961 + ID_B1 SINE B4 59 214 -10 1 1237 215 284 27 13 chr11 85559110 85559185 -36284671 - MIR SINE MIR -86 122 47 1 1237 585 202 18 0 chr11 85560246 85560355 -36283501 - PB1D9 SINE Alu -8 112 2 1 1237 26 0 0 0 chr11 85560357 85560383 -36283473 + AT_rich Low_complexity Low_complexity 1 26 0 1 1237 279 328 88 44 chr11 85560394 85560531 -36283325 - B3A SINE B2 -55 143 1 1 1237 23 0 0 0 chr11 85560544 85560567 -36283289 + AT_rich Low_complexity Low_complexity 1 23 0 1 1237 664 108 49 0 chr11 85560581 85560683 -36283173 - PB1D9 SINE Alu -13 107 1 1 1237 455 329 22 75 chr11 85560685 85560912 -36282944 - ID_B1 SINE B4 -7 217 3 1 1237 517 322 63 6 chr11 85561098 85561273 -36282583 + MER58A DNA MER1_type 40 224 0 1 1237 588 253 101 0 chr11 85561281 85561459 -36282397 - Charlie4a DNA MER1_type -288 220 25 1 1237 379 232 7 54 chr11 85561761 85561890 -36281966 + B4A SINE B4 1 172 -120 1 1237 1170 232 166 21 chr11 85562532 85563096 -36280760 - Lx8 LINE L1 -252 7221 6576 1 1237 240 35 0 0 chr11 85563166 85563195 -36280661 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1237 1238 48 0 0 chr11 85563195 85563342 -36280514 - B1_Mm SINE Alu 0 147 1 1 1237 22 80 0 0 chr11 85563362 85563412 -36280444 + AT_rich Low_complexity Low_complexity 1 50 0 1 1237 377 210 460 0 chr11 85563421 85563545 -36280311 - B3A SINE B2 -17 181 1 1 1237 263 319 25 58 chr11 85563548 85563668 -36280188 - PB1D10 SINE Alu 0 117 2 1 1237 434 263 137 31 chr11 85565402 85565563 -36278293 - RMER30 DNA MER1_type -11 191 14 1 1237 343 242 210 32 chr11 85565643 85565767 -36278089 - B3 SINE B2 0 216 71 1 1237 891 204 83 0 chr11 85566213 85566394 -36277462 - B3 SINE B2 -1 215 20 1 1237 278 271 99 69 chr11 85567288 85567322 -36276534 + YREP_Mm Unknown Unknown 125 239 -1573 1 1237 1086 70 7 7 chr11 85567322 85567465 -36276391 - B1_Mus1 SINE Alu 0 148 6 1 1237 278 271 99 69 chr11 85567465 85567490 -36276366 + YREP_Mm Unknown Unknown 240 332 -1480 1 1237 370 252 43 90 chr11 85567489 85567632 -36276224 - B3A SINE B2 -4 194 38 1 1237 1033 88 0 58 chr11 85567657 85567813 -36276043 - B1_Mus1 SINE Alu 0 148 2 1 1237 504 250 49 42 chr11 85567864 85568006 -36275850 - ID_B1 SINE B4 0 224 82 1 1237 287 240 73 16 chr11 85570194 85570317 -36273539 - L1MA6 LINE L1 -234 6066 5937 1 1237 773 240 112 4 chr11 85570316 85570567 -36273289 - L1MA6 LINE L1 -511 5789 5512 1 1237 251 335 115 13 chr11 85570754 85570911 -36272945 + MIR SINE MIR 54 226 -36 1 1237 662 283 34 39 chr11 85570937 85571143 -36272713 + B3 SINE B2 2 206 -10 1 1237 608 291 38 6 chr11 85571558 85571717 -36272139 + B4 SINE B4 1 164 -128 1 1237 287 319 10 71 chr11 85571644 85571742 -36272114 + B1_Mm SINE Alu 6 97 -50 1 1237 360 0 0 0 chr11 85571901 85571941 -36271915 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1237 369 0 0 0 chr11 85571941 85571981 -36271875 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1237 550 273 27 34 chr11 85572653 85572801 -36271055 + B1F1 SINE Alu 1 147 -2 1 1237 248 215 44 122 chr11 85572810 85572900 -36270956 + ID2 SINE ID 1 83 0 1 1237 229 151 19 19 chr11 85572900 85572954 -36270902 + GA-rich Low_complexity Low_complexity 3 56 0 1 1237 325 293 94 21 chr11 85574033 85574225 -36269631 - MIR3 SINE MIR -2 206 1 1 1237 438 280 27 36 chr11 85576143 85576254 -36267602 - PB1D7 SINE Alu -4 116 7 1 1237 27 0 0 0 chr11 85576301 85576328 -36267528 + AT_rich Low_complexity Low_complexity 1 27 0 1 1237 434 261 20 104 chr11 85576328 85576509 -36267347 + PB1D10 SINE Alu 5 149 0 1 1237 363 121 0 0 chr11 85576509 85576567 -36267289 + (TGGG)n Simple_repeat Simple_repeat 2 59 0 1 1237 904 246 90 23 chr11 85576569 85576835 -36267021 + MER2 DNA MER2_type 62 345 0 1 1237 283 261 44 38 chr11 85577420 85577563 -36266293 + MIR SINE MIR 18 165 -111 1 1237 602 289 51 10 chr11 85577668 85577864 -36265992 + ID_B1 SINE B4 5 208 -16 1 1237 205 365 39 9 chr11 85578946 85579074 -36264782 - MIRc SINE MIR -130 138 5 1 1237 21 0 0 0 chr11 85579157 85579178 -36264678 + AT_rich Low_complexity Low_complexity 1 21 0 1 1237 278 234 16 0 chr11 85579875 85579939 -36263917 - ID4 SINE ID -16 67 3 1 1237 551 162 9 62 chr11 85581694 85581806 -36262050 + B3 SINE B2 111 216 0 1 1237 224 282 66 66 chr11 85581820 85581911 -36261945 + B4A SINE B4 84 174 -118 1 1237 557 214 41 0 chr11 85581837 85581935 -36261921 + PB1D7 SINE Alu 12 113 -7 1 1237 582 306 44 6 chr11 85582214 85582372 -36261484 + ID_B1 SINE B4 43 206 -18 1 1237 330 132 0 0 chr11 85582397 85582450 -36261406 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1237 259 289 33 106 chr11 85582450 85582601 -36261255 + MT2B LTR ERVL 115 254 -347 1 1237 268 302 26 115 chr11 85582479 85582500 -36261356 - YREP_Mm Unknown Unknown -1480 332 258 1 1237 568 277 7 28 chr11 85582500 85582645 -36261211 + B1F1 SINE Alu 1 142 -7 1 1237 268 302 26 115 chr11 85582645 85582670 -36261186 - YREP_Mm Unknown Unknown -1480 257 159 1 1237 195 42 0 0 chr11 85583728 85583752 -36260104 + (TTGTG)n Simple_repeat Simple_repeat 4 27 0 1 1237 407 231 38 9 chr11 85583755 85583860 -36259996 - B1F SINE Alu 0 149 42 1 1237 472 204 0 103 chr11 85584044 85584170 -36259686 + MT2B LTR ERVL 152 264 -337 1 1237 1119 52 0 0 chr11 85584069 85584205 -36259651 + B1_Mus1 SINE Alu 13 148 0 1 1237 192 77 0 0 chr11 85584207 85584233 -36259623 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1237 5282 152 37 29 chr11 85584494 85585395 -36258461 - RMER13B LTR ERVK 0 908 1 1 1237 198 0 0 0 chr11 85585417 85585439 -36258417 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1 1237 525 208 31 70 chr11 85587198 85587327 -36256529 - B1F SINE Alu 0 149 26 1 1237 260 208 3 64 chr11 85587940 85588025 -36255831 + MIRc SINE MIR 79 161 -115 1 1238 570 15 0 0 chr11 85590431 85590498 -36253358 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1238 182 338 13 26 chr11 85592177 85592253 -36251603 + L2 LINE L2 1461 1535 -1884 1 1238 374 317 20 0 chr11 85592327 85592428 -36251428 + 5S rRNA rRNA 16 118 -3 1 1238 241 302 35 11 chr11 85592858 85592945 -36250911 - L2 LINE L2 -2703 716 628 1 1238 318 145 95 16 chr11 85592970 85593033 -36250823 - B1_Mur2 SINE Alu -9 140 73 1 1238 333 289 0 73 chr11 85593382 85593505 -36250351 + PB1D10 SINE Alu 3 116 -1 1 1238 413 240 217 0 chr11 85593719 85593816 -36250040 + B1F SINE Alu 10 127 0 1 1238 186 362 14 0 chr11 85594690 85594759 -36249097 - L2c LINE L2 -54 3372 3303 1 1238 1399 117 162 4 chr11 85595967 85596208 -36247648 - MTC LTR MaLR -5 416 138 1 1238 362 78 0 0 chr11 85596209 85596260 -36247596 + B1_Mur4 SINE Alu 100 150 0 1 1238 599 79 22 0 chr11 85596260 85596349 -36247507 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 1 1238 888 92 8 0 chr11 85596351 85596470 -36247386 - MTC LTR MaLR -301 120 1 1 1238 616 233 9 0 chr11 85596814 85596930 -36246926 - RSINE1 SINE B4 -43 122 6 1 1238 327 272 236 7 chr11 85597375 85597523 -36246333 - MIRb SINE MIR -21 241 60 1 1238 199 288 23 81 chr11 85597615 85597702 -36246154 - L2c LINE L2 -194 3193 3112 1 1238 893 238 78 25 chr11 85598788 85599081 -36244775 - MTEb LTR MaLR -2 377 23 1 1238 668 262 7 0 chr11 85599346 85599487 -36244369 - ID_B1 SINE B4 0 224 83 1 1238 291 313 113 0 chr11 85600152 85600267 -36243589 + B1F SINE Alu 15 142 -7 1 1238 491 192 19 57 chr11 85600508 85600613 -36243243 + PB1D10 SINE Alu 16 116 -1 1 1238 230 244 237 25 chr11 85600613 85600626 -36243230 + B4A SINE B4 101 243 -49 1 1238 1587 43 0 5 chr11 85601681 85601869 -36241987 - B2_Mm1t SINE B2 -6 187 1 1 1238 1025 228 22 27 chr11 85602691 85602916 -36240940 - ID_B1 SINE B4 0 224 1 1 1238 286 42 42 0 chr11 85603006 85603054 -36240802 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1238 338 255 29 58 chr11 85603063 85603167 -36240689 - PB1D7 SINE Alu -19 101 1 1 1238 754 278 39 40 chr11 85604127 85604377 -36239479 - ID_B1 SINE B4 -44 248 1 1 1238 435 211 0 11 chr11 85604488 85604579 -36239277 + PB1 SINE Alu 36 125 -2 1 1238 622 217 147 0 chr11 85604582 85604711 -36239145 - B1_Mur1 SINE Alu -1 148 1 1 1238 527 269 58 16 chr11 85605193 85605314 -36238542 - RSINE1 SINE B4 -21 144 19 1 1238 273 305 165 37 chr11 85605634 85605852 -36238004 + MIRb SINE MIR 20 265 -3 1 1238 302 320 51 39 chr11 85606725 85606881 -36236975 - L1ME4a LINE L1 -31 6093 5936 1 1238 523 277 37 30 chr11 85606934 85607068 -36236788 - B3 SINE B2 -81 135 1 1 1238 243 125 0 0 chr11 85607076 85607116 -36236740 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 1238 620 144 114 46 chr11 85607131 85607262 -36236594 + B1_Mur1 SINE Alu 2 141 -8 2 1238 365 304 77 132 chr11 85607624 85607806 -36236050 - B4A SINE B4 -117 175 4 2 1238 294 271 0 14 chr11 85607911 85607982 -36235874 - MIR SINE MIR -98 110 41 2 1238 203 156 0 0 chr11 85609069 85609101 -36234755 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2 1238 405 282 0 28 chr11 85609102 85609208 -36234648 - PB1D10 SINE Alu 0 117 15 2 1238 474 237 11 0 chr11 85609480 85609573 -36234283 - PB1D7 SINE Alu -13 107 14 2 1238 278 294 48 48 chr11 85609489 85609614 -36234242 - ID_B1 SINE B4 -49 175 51 2 1238 238 284 81 0 chr11 85610455 85610529 -36233327 + Charlie4z DNA MER1_type 10 89 -78 2 1238 236 233 12 110 chr11 85610543 85610625 -36233231 - ID4_ SINE ID -8 75 2 2 1238 260 306 28 0 chr11 85610668 85610740 -36233116 - ID4_ SINE ID -9 74 1 2 1238 203 339 176 8 chr11 85611925 85612044 -36231812 + MIRc SINE MIR 62 200 -68 2 1238 372 200 0 0 chr11 85612121 85612191 -36231665 - ID4 SINE ID -6 77 8 2 1238 301 261 91 0 chr11 85612396 85612484 -36231372 + PB1D10 SINE Alu 22 117 0 2 1238 205 345 72 9 chr11 85614104 85614215 -36229641 + MIRc SINE MIR 9 126 -142 2 1238 378 0 0 0 chr11 85614333 85614375 -36229481 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1238 441 318 16 81 chr11 85614448 85614633 -36229223 - B4A SINE B4 -118 174 2 2 1238 594 271 64 59 chr11 85614633 85614853 -36229003 - ID_B1 SINE B4 -1 223 3 2 1238 198 0 0 0 chr11 85616038 85616060 -36227796 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1238 424 148 22 11 chr11 85616124 85616213 -36227643 + CT-rich Low_complexity Low_complexity 3 92 0 2 1238 420 71 0 0 chr11 85616483 85616539 -36227317 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1238 776 284 41 7 chr11 85618150 85618420 -36225436 + L1MA8 LINE L1 5995 6273 -18 2 1238 523 183 0 0 chr11 85618602 85618684 -36225172 - ID4_ SINE ID 0 83 2 2 1238 1237 55 0 0 chr11 85620158 85620304 -36223552 - B1_Mm SINE Alu 0 147 2 2 1238 642 247 22 38 chr11 85621145 85621330 -36222526 + B3A SINE B2 1 182 -16 2 1238 548 187 71 9 chr11 85621808 85621921 -36221935 + ID_B1 SINE B4 91 210 -14 2 1238 756 231 156 0 chr11 85621938 85622124 -36221732 + B3 SINE B2 2 216 0 2 1238 43 35 0 0 chr11 85622124 85622181 -36221675 + AT_rich Low_complexity Low_complexity 1 57 0 2 1238 208 158 26 0 chr11 85622313 85622351 -36221505 + CT-rich Low_complexity Low_complexity 2 40 0 2 1238 590 278 161 28 chr11 85622502 85622757 -36221099 + B4A SINE B4 1 289 -3 2 1238 613 236 16 0 chr11 85623152 85623279 -36220577 - RSINE1 SINE B4 -31 134 6 2 1238 1062 207 184 10 chr11 85623900 85624193 -36219663 - MTEb LTR MaLR 0 379 36 2 1238 225 235 92 23 chr11 85624227 85624314 -36219542 - ORR1E LTR MaLR -8 371 279 2 1238 331 252 29 10 chr11 85624372 85624476 -36219380 - ORR1E LTR MaLR -253 106 1 2 1238 253 266 50 12 chr11 85625143 85625223 -36218633 + ID4_ SINE ID 1 83 0 2 1238 220 312 0 0 chr11 85625859 85625923 -36217933 + L2b LINE L2 3310 3373 -2 2 1238 251 0 59 0 chr11 85628404 85628438 -36215418 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 2 1238 460 269 0 18 chr11 85629762 85629872 -36213984 + PB1 SINE Alu 16 123 -4 2 1238 603 92 0 0 chr11 85629882 85629969 -36213887 + (GGGA)n Simple_repeat Simple_repeat 2 88 0 2 1238 213 331 16 8 chr11 85632670 85632795 -36211061 + CT-rich Low_complexity Low_complexity 2 127 0 2 1238 230 226 0 0 chr11 85632676 85632729 -36211127 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 2 1238 254 359 42 8 chr11 85633453 85633571 -36210285 - MIRb SINE MIR 0 268 147 2 1238 197 331 7 80 chr11 85635890 85636028 -36207828 - L2b LINE L2 0 3375 3248 2 1238 306 73 0 0 chr11 85637269 85637310 -36206546 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 1238 345 276 42 69 chr11 85639994 85640138 -36203718 - B1F SINE Alu 0 149 10 2 1238 262 288 60 51 chr11 85641599 85641716 -36202140 - MIR3 SINE MIR -17 191 74 2 1238 981 26 0 0 chr11 85641789 85641905 -36201951 + (TC)n Simple_repeat Simple_repeat 1 116 0 2 1238 405 0 0 0 chr11 85641930 85641975 -36201881 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1238 283 269 139 25 chr11 85642087 85642209 -36201647 + MIRm SINE MIR 51 186 -90 2 1238 27 29 0 0 chr11 85643760 85643794 -36200062 + GC_rich Low_complexity Low_complexity 1 34 0 2 1238 774 32 0 0 chr11 85645031 85645124 -36198732 + (GA)n Simple_repeat Simple_repeat 2 94 0 2 1238 294 50 0 0 chr11 85646377 85646417 -36197439 + (CAGCC)n Simple_repeat Simple_repeat 5 44 0 2 1238 56 55 0 0 chr11 85646490 85646581 -36197275 + GC_rich Low_complexity Low_complexity 1 91 0 2 1238 276 120 0 0 chr11 85646778 85646828 -36197028 + (CGG)n Simple_repeat Simple_repeat 2 51 0 2 1238 328 20 0 39 chr11 85647302 85647353 -36196503 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1238 405 0 0 0 chr11 85649201 85649246 -36194610 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1238 210 370 28 9 chr11 85652125 85652234 -36191622 + MIRm SINE MIR 35 145 -131 2 1238 282 243 0 0 chr11 85654123 85654193 -36189663 + (CCG)n Simple_repeat Simple_repeat 1 70 0 2 1238 504 0 0 0 chr11 85655888 85655944 -36187912 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1238 21 0 0 0 chr11 85656790 85656811 -36187045 + AT_rich Low_complexity Low_complexity 1 21 0 2 1238 537 234 49 14 chr11 85660931 85661074 -36182782 + B1F SINE Alu 1 148 -1 2 1238 315 0 0 0 chr11 85661100 85661135 -36182721 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1238 297 0 0 0 chr11 85661135 85661167 -36182689 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1238 207 69 0 0 chr11 85661391 85661420 -36182436 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1238 1302 72 44 16 chr11 85661423 85661606 -36182250 - B2_Mm1a SINE B2 -4 189 2 2 1238 204 97 0 0 chr11 85661695 85661726 -36182130 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 1238 306 0 0 0 chr11 85662966 85663000 -36180856 + (TCC)n Simple_repeat Simple_repeat 3 36 0 2 1238 1059 130 0 0 chr11 85663000 85663169 -36180687 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 2 1238 272 200 15 0 chr11 85663180 85663245 -36180611 + T-rich Low_complexity Low_complexity 2 67 0 2 1238 614 207 132 0 chr11 85663254 85663375 -36180481 - B1_Mur2 SINE Alu -12 137 1 2 1238 522 234 117 68 chr11 85664331 85664537 -36179319 - B3 SINE B2 0 216 1 2 1238 191 205 0 25 chr11 85664774 85664814 -36179042 + MIRb SINE MIR 220 258 -10 2 1238 207 194 0 0 chr11 85665498 85665534 -36178322 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2 1238 360 282 24 0 chr11 85665534 85665619 -36178237 - RMER12 LTR ERVK -471 851 765 2 1238 21 0 0 0 chr11 85665992 85666013 -36177843 + AT_rich Low_complexity Low_complexity 1 21 0 2 1238 1303 231 31 12 chr11 85666029 85666351 -36177505 - ORR1E LTR MaLR -31 348 4 2 1238 458 93 53 0 chr11 85666437 85666512 -36177344 - B2_Mm1a SINE B2 -3 190 112 2 1238 243 0 0 0 chr11 85666523 85666550 -36177306 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 1238 1267 50 0 0 chr11 85666550 85666710 -36177146 - B2_Mm1a SINE B2 -33 160 1 2 1238 543 174 0 0 chr11 85666773 85666888 -36176968 + (TATG)n Simple_repeat Simple_repeat 4 118 0 2 1238 779 239 68 63 chr11 85666887 85667124 -36176732 - B4A SINE B4 0 292 55 2 1238 411 98 0 0 chr11 85667175 85667236 -36176620 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1238 214 196 21 42 chr11 85667236 85667278 -36176578 - PB1D10 SINE Alu -20 97 55 2 1238 227 234 21 0 chr11 85667296 85667343 -36176513 - PB1D10 SINE Alu -15 102 55 2 1238 323 288 12 0 chr11 85667363 85667443 -36176413 - PB1D10 SINE Alu -15 102 22 2 1238 964 218 76 0 chr11 85667504 85667701 -36176155 - B3 SINE B2 0 216 5 2 1238 506 253 10 112 chr11 85667709 85667727 -36176129 - B2_Mm2 SINE B2 -10 185 170 2 1238 477 0 0 0 chr11 85667727 85667780 -36176076 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1238 351 0 0 0 chr11 85667780 85667818 -36176038 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1238 459 0 0 0 chr11 85667819 85667870 -36175986 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1238 778 253 10 112 chr11 85667870 85668053 -36175803 - B3 SINE B2 -37 179 2 2 1238 500 221 44 37 chr11 85668059 85668195 -36175661 + L1M4 LINE L1 4852 4988 -1158 2 1238 562 280 113 8 chr11 85668206 85668444 -36175412 - MT2A LTR ERVL 0 533 271 2 1238 553 258 32 0 chr11 85668443 85668567 -36175289 - ID_B1 SINE B4 -91 133 6 2 1238 607 301 0 14 chr11 85668604 85668749 -36175107 - B1F1 SINE Alu -1 148 6 2 1238 363 44 0 0 chr11 85668756 85668801 -36175055 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 2 1238 1086 201 31 0 chr11 85668801 85668995 -36174861 - B3 SINE B2 -16 200 1 2 1238 506 225 0 18 chr11 85668995 85669108 -36174748 - PB1D10 SINE Alu 0 117 7 2 1238 291 253 10 78 chr11 85669822 85669925 -36173931 - MLT1A1 LTR MaLR 0 408 313 2 1238 198 239 0 0 chr11 85670362 85670433 -36173423 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1238 455 278 129 88 chr11 85670643 85670915 -36172941 + MLT1C LTR MaLR 46 328 -139 2 1238 1600 26 11 0 chr11 85670938 85671127 -36172729 - B2_Mm1a SINE B2 -2 191 1 2 1238 423 0 0 0 chr11 85671365 85671412 -36172444 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1238 456 72 0 0 chr11 85671412 85671481 -36172375 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1238 241 204 0 0 chr11 85671829 85671883 -36171973 + L1M4 LINE L1 5654 5707 -477 2 1238 420 319 76 51 chr11 85671884 85672238 -36171618 + L1ME2 LINE L1 5749 6111 -53 3 1238 602 290 153 35 chr11 85672290 85672503 -36171353 + B4A SINE B4 1 241 -51 3 1238 1166 114 57 0 chr11 85672503 85672678 -36171178 + B2_Mm1t SINE B2 1 185 -8 3 1238 602 290 153 35 chr11 85672678 85672725 -36171131 + B4A SINE B4 242 292 0 3 1238 1269 87 0 0 chr11 85672931 85673092 -36170764 + B2_Mm2 SINE B2 2 162 -33 3 1238 22 0 0 0 chr11 85673103 85673125 -36170731 + AT_rich Low_complexity Low_complexity 1 22 0 3 1238 734 55 0 0 chr11 85673137 85673228 -36170628 - B1_Mm SINE Alu -2 145 55 3 1238 1018 250 18 5 chr11 85673266 85673483 -36170373 + ID_B1 SINE B4 5 224 0 3 1238 2323 97 26 0 chr11 85674669 85674979 -36168877 + ORR1A3 LTR MaLR 5 322 -4 3 1238 314 194 32 0 chr11 85674989 85675051 -36168805 + MER2 DNA MER2_type 77 140 -205 3 1238 408 296 17 0 chr11 85675060 85675175 -36168681 + PB1D10 SINE Alu 1 117 0 3 1238 480 251 124 54 chr11 85675189 85675374 -36168482 + B3A SINE B2 1 198 0 3 1238 370 326 50 36 chr11 85675377 85675550 -36168306 + MER2B DNA MER2_type 131 312 -33 3 1238 188 67 33 0 chr11 85675758 85675788 -36168068 + (TGGGGG)n Simple_repeat Simple_repeat 5 35 0 3 1238 395 284 49 21 chr11 85675933 85676077 -36167779 + RMER15 LTR ERVL 421 568 -7 3 1238 225 258 16 16 chr11 85676143 85676206 -36167650 + CT-rich Low_complexity Low_complexity 5 67 0 3 1238 840 67 0 0 chr11 85676232 85676337 -36167519 - B2_Mm2 SINE B2 -89 106 2 3 1238 277 286 0 83 chr11 85676375 85676459 -36167397 - ID4_ SINE ID -4 79 3 3 1238 527 297 93 0 chr11 85676556 85676738 -36167118 + MER20 DNA MER1_type 12 210 -9 3 1238 218 265 0 20 chr11 85676877 85676927 -36166929 + polypyrimidine Low_complexity Low_complexity 4 52 0 3 1238 1142 101 0 0 chr11 85677803 85677951 -36165905 - B1_Mus1 SINE Alu 0 148 1 3 1238 488 262 189 0 chr11 85677977 85678141 -36165715 - B3 SINE B2 -2 214 20 3 1238 606 212 17 8 chr11 85678220 85678339 -36165517 - B1_Mur1 SINE Alu -10 139 20 3 1238 1193 68 0 7 chr11 85678369 85678517 -36165339 - B1_Mus1 SINE Alu 0 148 2 3 1238 430 313 58 91 chr11 85678574 85678968 -36164888 + RMER17C LTR ERVK 1 381 -29 3 1238 993 131 58 29 chr11 85678992 85679165 -36164691 + B2_Mm1t SINE B2 2 179 -14 3 1238 1208 34 0 39 chr11 85679178 85679331 -36164525 + B1_Mm SINE Alu 1 147 0 3 1238 195 162 0 0 chr11 85679425 85679462 -36164394 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1238 210 154 0 0 chr11 85679501 85679540 -36164316 + T-rich Low_complexity Low_complexity 1 39 0 3 1238 1359 74 11 0 chr11 85679565 85679741 -36164115 - B2_Mm1t SINE B2 -14 179 2 3 1238 203 152 0 0 chr11 85679850 85679883 -36163973 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 3 1238 218 244 0 0 chr11 85679900 85679941 -36163915 - ID SINE ID -174 50 10 3 1238 368 275 97 32 chr11 85680064 85680218 -36163638 + L1MC3 LINE L1 6916 7079 -963 3 1238 461 213 23 47 chr11 85680426 85680554 -36163302 + L1MC3 LINE L1 7331 7455 -330 3 1238 714 172 117 0 chr11 85680554 85680726 -36163130 + B3 SINE B2 1 198 0 3 1238 386 207 105 26 chr11 85680733 85680847 -36163009 + L1MC3 LINE L1 7442 7564 -221 3 1238 21 57 0 0 chr11 85680870 85680905 -36162951 + AT_rich Low_complexity Low_complexity 1 35 0 3 1238 664 229 96 14 chr11 85680940 85681086 -36162770 - RSINE1 SINE B4 -4 161 4 3 1238 588 146 155 0 chr11 85681884 85681987 -36161869 - PB1D9 SINE Alu -1 119 1 3 1238 978 74 43 14 chr11 85681990 85682128 -36161728 - B1_Mur4 SINE Alu 0 150 9 3 1238 889 152 0 14 chr11 85682170 85682297 -36161559 + B1_Mus1 SINE Alu 11 137 -11 3 1238 369 0 0 0 chr11 85682297 85682338 -36161518 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 3 1238 889 152 0 14 chr11 85682338 85682350 -36161506 + B1_Mus1 SINE Alu 138 148 0 3 1238 616 87 109 0 chr11 85682364 85682456 -36161400 + B2_Mm2 SINE B2 2 103 -92 3 1238 598 233 52 52 chr11 85682513 85682667 -36161189 - RSINE1 SINE B4 0 165 12 3 1238 357 300 0 48 chr11 85682951 85683056 -36160800 - ID_B1 SINE B4 -30 194 95 3 1238 584 255 56 6 chr11 85683069 85683247 -36160609 - B3 SINE B2 -6 210 2 3 1238 387 0 0 0 chr11 85683292 85683335 -36160521 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1238 526 134 0 68 chr11 85683335 85683423 -36160433 - B1_Mur4 SINE Alu -7 143 62 3 1238 238 208 11 144 chr11 85683373 85683463 -36160393 - MT2B LTR ERVL -344 257 180 3 1238 1217 261 54 65 chr11 85683499 85684055 -36159801 - L1MA9 LINE L1 -28 6284 5735 3 1238 520 244 40 8 chr11 85684090 85684214 -36159642 - MLT1A1 LTR MaLR 0 408 281 3 1238 1917 122 45 63 chr11 85684448 85684781 -36159075 - ORR1A4 LTR MaLR 0 329 3 3 1238 701 154 64 29 chr11 85684834 85684974 -36158882 + B1_Mus2 SINE Alu 2 146 -1 3 1238 468 211 176 7 chr11 85684983 85685131 -36158725 - L1MA9 LINE L1 -644 5668 5496 3 1238 445 121 0 178 chr11 85685172 85685273 -36158583 - B1_Mur4 SINE Alu -67 83 1 3 1238 465 92 0 0 chr11 85685299 85685364 -36158492 + B1_Mm SINE Alu 83 147 0 3 1238 649 116 183 26 chr11 85685388 85685422 -36158434 + B1_Mur3 SINE Alu 5 38 -111 3 1238 189 107 0 0 chr11 85685422 85685450 -36158406 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 3 1238 649 116 183 26 chr11 85685450 85685530 -36158326 + B1_Mur3 SINE Alu 39 137 -12 3 1238 215 0 67 0 chr11 85685530 85685560 -36158296 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 3 1238 446 158 13 13 chr11 85685560 85685637 -36158219 + ID_B1 SINE B4 144 220 -4 3 1238 279 217 153 0 chr11 85685657 85685770 -36158086 - L1MA9 LINE L1 -720 5469 5345 3 1238 313 296 101 9 chr11 85685889 85685998 -36157858 - B4 SINE B4 -172 120 2 3 1238 654 263 56 16 chr11 85686135 85686440 -36157416 - L1MA9 LINE L1 -849 5291 4975 3 1238 327 218 144 9 chr11 85686443 85686483 -36157373 - L1M2 LINE L1 -1100 5043 4992 3 1238 624 285 38 6 chr11 85686483 85686642 -36157214 - RSINE1 SINE B4 0 165 2 3 1238 327 218 144 9 chr11 85686642 85686712 -36157144 - L1M2 LINE L1 -1152 4991 4919 3 1238 1615 179 93 45 chr11 85687718 85688043 -36155813 - ORR1D1 LTR MaLR 0 374 24 3 1238 2425 142 59 30 chr11 85688043 85688448 -36155408 - MTC LTR MaLR 0 421 5 3 1238 1615 179 93 45 chr11 85688448 85688478 -36155378 - ORR1D1 LTR MaLR -351 23 2 3 1238 183 298 0 0 chr11 85689033 85689080 -36154776 - MIR SINE MIR -72 136 90 3 1238 519 164 0 0 chr11 85691575 85691679 -36152177 + CT-rich Low_complexity Low_complexity 1 104 0 3 1238 403 262 30 60 chr11 85691700 85691834 -36152022 - RSINE1 SINE B4 -34 131 2 3 1238 671 228 13 27 chr11 85691929 85692078 -36151778 + B1F SINE Alu 3 149 0 3 1238 368 330 0 0 chr11 85692314 85692402 -36151454 - PB1 SINE Alu -13 114 27 3 1238 536 254 93 15 chr11 85693000 85693178 -36150678 + MIR SINE MIR 8 204 -64 3 1238 517 242 33 8 chr11 85693389 85693510 -36150346 - PB1 SINE Alu -3 124 1 3 1238 216 0 0 0 chr11 85693532 85693556 -36150300 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 1238 753 189 65 7 chr11 85693691 85693830 -36150026 + B1_Mur2 SINE Alu 3 149 0 3 1238 213 39 0 0 chr11 85693831 85693857 -36149999 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1238 448 265 11 11 chr11 85695166 85695343 -36148513 - ID_B1 SINE B4 -2 222 2 3 1238 421 209 58 0 chr11 85695374 85695460 -36148396 + ID_B1 SINE B4 82 172 -52 3 1238 857 235 71 0 chr11 85695492 85695688 -36148168 + B3 SINE B2 1 210 -6 3 1238 845 198 172 8 chr11 85696173 85696423 -36147433 + B4 SINE B4 2 292 0 3 1238 649 222 3 8 chr11 85696430 85696791 -36147065 + (CA)n Simple_repeat Simple_repeat 1 358 0 3 1238 312 209 90 0 chr11 85696792 85696859 -36146997 + HAL1-3A_ME LINE L1 1974 2046 -812 3 1238 276 250 18 107 chr11 85697196 85697308 -36146548 - MIRb SINE MIR -153 115 14 3 1238 360 0 0 0 chr11 85697370 85697410 -36146446 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1238 270 0 0 0 chr11 85697652 85697682 -36146174 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1238 772 140 16 8 chr11 85698300 85698447 -36145409 - B1_Mur3 SINE Alu 0 150 1 3 1238 501 262 24 35 chr11 85698447 85698470 -36145386 - ID_B1 SINE B4 -1 223 56 3 1238 287 226 0 0 chr11 85698539 85698592 -36145264 - RLTR15 LTR ERVK 0 359 307 3 1238 225 312 24 36 chr11 85700285 85700368 -36143488 - LTR33 LTR ERVL -180 335 254 3 1238 222 91 0 0 chr11 85703725 85703758 -36140098 + (CCG)n Simple_repeat Simple_repeat 3 35 0 3 1238 381 43 0 0 chr11 85705105 85705152 -36138704 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1238 265 59 0 56 chr11 85706799 85706853 -36137003 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3 1238 198 0 0 0 chr11 85707781 85707803 -36136053 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 1238 390 21 0 0 chr11 85708026 85708073 -36135783 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1238 279 0 0 0 chr11 85708073 85708103 -36135753 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1238 204 97 0 0 chr11 85710220 85710251 -36133605 + (C)n Simple_repeat Simple_repeat 1 31 0 3 1238 206 53 0 73 chr11 85710711 85710731 -36133125 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1238 815 144 70 28 chr11 85710731 85710874 -36132982 - B1_Mur4 SINE Alu 0 150 2 3 1238 206 53 0 73 chr11 85710874 85710894 -36132962 + (TTTTTG)n Simple_repeat Simple_repeat 1 18 0 3 1238 455 228 32 11 chr11 85710896 85710989 -36132867 - PB1D10 SINE Alu -1 116 22 3 1238 244 183 115 16 chr11 85711041 85711102 -36132754 - ID4 SINE ID -14 69 3 3 1238 317 293 33 94 chr11 85712612 85712793 -36131063 + L1MC3 LINE L1 6477 6646 -1139 3 1238 334 113 94 0 chr11 85712818 85712871 -36130985 + HAL1-3A_ME LINE L1 1975 2032 -826 3 1238 532 73 24 0 chr11 85713050 85713132 -36130724 + (TCCCC)n Simple_repeat Simple_repeat 4 87 0 3 1238 197 347 136 8 chr11 85713463 85713588 -36130268 + MIRb SINE MIR 83 223 -45 4 1238 266 304 0 26 chr11 85713610 85713762 -36130094 + (ATGGTG)n Simple_repeat Simple_repeat 1 148 0 4 1238 306 326 99 21 chr11 85715971 85716112 -36127744 - HAL1-3A_ME LINE L1 -423 2435 2284 4 1238 693 271 10 111 chr11 85716355 85716418 -36127438 - B3 SINE B2 -37 179 132 4 1238 1189 89 5 91 chr11 85716418 85716616 -36127240 + B2_Mm2 SINE B2 1 181 -14 4 1238 693 271 10 111 chr11 85716616 85716751 -36127105 - B3 SINE B2 -85 131 1 4 1238 2152 103 102 8 chr11 85717744 85718096 -36125760 - ORR1B1 LTR MaLR -8 386 2 4 1238 650 299 69 49 chr11 85718336 85718524 -36125332 + B4A SINE B4 3 194 -98 4 1238 219 69 0 0 chr11 85718524 85718553 -36125303 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 4 1238 650 299 69 49 chr11 85718553 85718610 -36125246 + B4A SINE B4 195 253 -39 4 1238 186 50 0 70 chr11 85718615 85718658 -36125198 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1238 287 121 190 0 chr11 85718922 85718980 -36124876 - PB1D10 SINE Alu 0 117 49 4 1238 278 248 35 0 chr11 85718980 85719061 -36124795 - B1_Mur1 SINE Alu -23 126 43 4 1238 707 287 58 25 chr11 85719263 85719506 -36124350 - B4 SINE B4 -2 290 40 4 1238 445 245 84 20 chr11 85719892 85720052 -36123804 - RSINE1 SINE B4 -123 169 1 4 1238 342 369 95 4 chr11 85720205 85720447 -36123409 - L1M5 LINE L1 -1327 4819 4556 4 1238 206 322 41 82 chr11 85720938 85721036 -36122820 + MIRb SINE MIR 139 232 -36 4 1239 412 279 0 9 chr11 85721251 85721363 -36122493 - PB1D7 SINE Alu -5 115 5 4 1239 249 327 19 68 chr11 85721590 85721751 -36122105 + MIR3 SINE MIR 42 194 -14 4 1239 1264 157 32 0 chr11 85722322 85722539 -36121317 - URR1B DNA MER1_type 0 225 2 4 1239 252 0 0 0 chr11 85723138 85723166 -36120690 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1239 365 351 76 0 chr11 85726434 85726565 -36117291 + Cheshire DNA MER1_type 144 284 -2136 4 1239 305 47 23 0 chr11 85728349 85728392 -36115464 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1239 213 65 0 0 chr11 85729283 85729314 -36114542 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 4 1239 21 0 0 0 chr11 85730407 85730428 -36113428 + GC_rich Low_complexity Low_complexity 1 21 0 4 1239 213 213 0 0 chr11 85733270 85733317 -36110539 + CT-rich Low_complexity Low_complexity 2 48 0 4 1239 749 74 0 318 chr11 85733317 85733534 -36110322 - B1_Mus1 SINE Alu 0 148 1 4 1239 198 0 0 0 chr11 85734906 85734928 -36108928 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 4 1239 585 279 0 26 chr11 85735311 85735462 -36108394 - B1F SINE Alu 0 149 3 4 1239 216 343 72 65 chr11 85735462 85735535 -36108321 - B4A SINE B4 -205 87 14 4 1239 254 310 0 0 chr11 85735790 85735848 -36108008 - PB1D10 SINE Alu -9 108 51 4 1239 640 130 29 58 chr11 85736117 85736256 -36107600 + URR1A DNA MER1_type 81 215 -11 4 1239 284 240 95 9 chr11 85737329 85737434 -36106422 - PB1D10 SINE Alu -1 116 3 4 1239 182 301 228 31 chr11 85737666 85737793 -36106063 + MIRb SINE MIR 73 224 -44 4 1239 637 277 0 7 chr11 85738235 85738373 -36105483 + ID_B1 SINE B4 80 216 -8 4 1239 1076 67 0 13 chr11 85739369 85739520 -36104336 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 4 1239 218 384 0 0 chr11 85741021 85741107 -36102749 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 1239 895 275 14 0 chr11 85741173 85741391 -36102465 + ID_B1 SINE B4 2 222 -2 4 1239 36 23 0 0 chr11 85741482 85741525 -36102331 + AT_rich Low_complexity Low_complexity 1 43 0 4 1239 288 0 0 0 chr11 85741650 85741682 -36102174 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 4 1239 240 208 21 0 chr11 85742712 85742760 -36101096 + B1F2 SINE Alu 7 55 -94 4 1239 204 67 0 0 chr11 85742779 85742809 -36101047 + (CTG)n Simple_repeat Simple_repeat 2 31 0 4 1239 370 289 7 111 chr11 85742926 85743070 -36100786 + RSINE1 SINE B4 31 159 -6 4 1239 333 259 21 43 chr11 85743632 85743773 -36100083 + (CATATA)n Simple_repeat Simple_repeat 3 140 0 4 1239 283 338 95 77 chr11 85743925 85744146 -36099710 - B4 SINE B4 -12 280 56 4 1239 281 360 0 0 chr11 85744244 85744319 -36099537 - B4A SINE B4 -217 75 1 4 1239 757 157 242 12 chr11 85744363 85744524 -36099332 - B3 SINE B2 -17 199 2 4 1239 1282 254 68 11 chr11 85745474 85745828 -36098028 - MTEa LTR MaLR 0 379 6 4 1239 238 276 0 0 chr11 85746750 85746808 -36097048 + MurSatRep1 Unknown Unknown 227 284 -1853 4 1239 986 209 19 29 chr11 85747007 85747214 -36096642 - B3 SINE B2 -10 206 2 4 1239 1000 268 52 0 chr11 85747297 85747528 -36096328 - B4A SINE B4 -3 289 47 4 1239 1042 83 0 40 chr11 85748095 85748245 -36095611 + B1_Mur3 SINE Alu 1 144 -5 4 1239 924 266 14 0 chr11 85748289 85748507 -36095349 + ID_B1 SINE B4 2 222 -2 4 1239 504 105 0 0 chr11 85749352 85749428 -36094428 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1239 478 301 73 18 chr11 85749447 85749721 -36094135 - B4A SINE B4 -2 290 2 4 1239 319 306 83 0 chr11 85749747 85749855 -36094001 + PB1D10 SINE Alu 1 117 0 4 1239 357 43 0 0 chr11 85750340 85750387 -36093469 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 1239 954 266 3 80 chr11 85750992 85751303 -36092553 + B4A SINE B4 4 290 -2 4 1239 377 351 79 109 chr11 85751932 85752373 -36091483 + L1ME3B LINE L1 5409 5836 -404 4 1239 435 269 0 19 chr11 85752699 85752805 -36091051 - PB1D10 SINE Alu -1 116 13 4 1239 1199 48 7 0 chr11 85752859 85753005 -36090851 + B1_Mus1 SINE Alu 1 147 -1 4 1239 423 0 0 0 chr11 85753492 85753539 -36090317 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1239 351 303 48 32 chr11 85753702 85753828 -36090028 + B1F1 SINE Alu 1 128 -21 4 1239 26 0 0 0 chr11 85753928 85753954 -36089902 + AT_rich Low_complexity Low_complexity 1 26 0 4 1239 897 137 0 0 chr11 85753968 85754099 -36089757 + B1_Mus1 SINE Alu 5 135 -13 4 1239 296 186 0 33 chr11 85754097 85754158 -36089698 - B1_Mur2 SINE Alu -36 113 55 4 1239 293 0 0 26 chr11 85754167 85754205 -36089651 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1239 777 156 7 69 chr11 85754209 85754354 -36089502 - B1_Mur3 SINE Alu -13 136 1 4 1239 531 241 0 9 chr11 85754648 85754757 -36089099 + PB1D10 SINE Alu 3 110 -7 4 1239 295 294 102 34 chr11 85756190 85756366 -36087490 - MIRb SINE MIR -54 214 27 4 1239 663 276 4 87 chr11 85756482 85756712 -36087144 - ID_B1 SINE B4 -13 211 1 4 1239 276 291 11 44 chr11 85756827 85756917 -36086939 - ID4 SINE ID -58 94 8 4 1239 308 64 0 21 chr11 85757393 85757441 -36086415 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1239 1082 93 0 0 chr11 85758052 85758191 -36085665 + B1_Mus1 SINE Alu 1 139 -9 4 1239 625 195 18 0 chr11 85758225 85758338 -36085518 + B1F1 SINE Alu 25 139 -10 4 1239 322 362 85 0 chr11 85758614 85758755 -36085101 - MIRb SINE MIR -109 159 7 4 1239 479 303 115 115 chr11 85758850 85759189 -36084667 - MER47B DNA MER2_type -42 376 38 4 1239 279 221 24 61 chr11 85759308 85759390 -36084466 + ID2 SINE ID 2 80 -3 4 1239 423 239 107 40 chr11 85759754 85759919 -36083937 - MIRc SINE MIR -9 199 18 4 1239 351 0 0 0 chr11 85760248 85760287 -36083569 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1239 620 200 7 0 chr11 85761042 85761182 -36082674 + CT-rich Low_complexity Low_complexity 2 142 0 4 1239 244 301 34 0 chr11 85761513 85761659 -36082197 + (CA)n Simple_repeat Simple_repeat 1 151 0 4 1239 404 246 0 13 chr11 85761676 85761795 -36082061 - PB1D7 SINE Alu -31 118 2 4 1239 211 281 0 34 chr11 85761864 85761923 -36081933 + C-rich Low_complexity Low_complexity 6 62 0 4 1239 741 320 56 4 chr11 85762032 85762283 -36081573 - B4A SINE B4 0 292 29 4 1239 202 270 31 16 chr11 85762402 85762466 -36081390 + (CATG)n Simple_repeat Simple_repeat 4 68 0 4 1239 504 228 55 7 chr11 85762536 85762682 -36081174 - L1M4 LINE L1 -488 5690 5538 4 1239 483 177 0 0 chr11 85762766 85762862 -36080994 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 1239 355 262 251 0 chr11 85762889 85763091 -36080765 - L1M4 LINE L1 -878 5419 5169 4 1239 262 265 133 29 chr11 85763101 85763206 -36080650 - PB1 SINE Alu 0 127 12 4 1239 225 272 12 12 chr11 85763357 85763439 -36080417 - L1M4 LINE L1 -1443 4703 4622 4 1239 213 290 0 61 chr11 85763585 85763651 -36080205 + B1F SINE Alu 3 64 -85 4 1239 543 281 14 14 chr11 85763706 85763847 -36080009 - ID_B1 SINE B4 -1 223 83 4 1239 180 0 0 0 chr11 85764507 85764527 -36079329 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1239 3911 199 62 14 chr11 85764527 85765442 -36078414 - Lx9 LINE L1 -27 7617 6635 4 1239 357 246 209 11 chr11 85765544 85765721 -36078135 - L1M4 LINE L1 -2527 3619 3408 4 1239 468 150 0 0 chr11 85765721 85765801 -36078055 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 4 1239 534 211 194 17 chr11 85765801 85766002 -36077854 - L1M4 LINE L1 -2688 3458 3224 4 1239 885 143 0 39 chr11 85766002 85766155 -36077701 - B1_Mur3 SINE Alu -1 148 2 4 1239 260 271 157 46 chr11 85766155 85766170 -36077686 - L1M4 LINE L1 -2917 3223 3212 4 1239 226 338 0 40 chr11 85766220 85766294 -36077562 - RSINE1 SINE B4 -9 156 86 4 1239 355 264 0 22 chr11 85766346 85766464 -36077392 - L1M4 LINE L1 -3134 3012 2901 4 1239 213 288 35 59 chr11 85766663 85766748 -36077108 + MIR3 SINE MIR 91 173 -35 4 1239 189 278 74 0 chr11 85766784 85766838 -36077018 + MIRc SINE MIR 94 151 -117 4 1239 774 296 0 18 chr11 85766876 85767093 -36076763 + B3 SINE B2 1 213 -3 4 1239 582 54 0 0 chr11 85767102 85767176 -36076680 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 4 1239 318 318 68 0 chr11 85767499 85767587 -36076269 - ID_B1 SINE B4 -1 223 130 4 1239 263 254 0 0 chr11 85767905 85767958 -36075898 - B1F SINE Alu -86 63 11 4 1239 256 279 12 12 chr11 85768089 85768169 -36075687 + ID4 SINE ID 1 80 -3 5 1239 717 150 82 15 chr11 85768231 85768366 -36075490 - B1_Mur4 SINE Alu -5 145 2 5 1239 502 206 315 0 chr11 85770094 85770240 -36073616 - MER53 DNA hAT 0 193 2 5 1239 183 139 0 0 chr11 85770550 85770586 -36073270 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1239 943 299 34 37 chr11 85770708 85771086 -36072770 - Charlie1a DNA MER1_type -277 1178 802 5 1239 350 262 0 0 chr11 85771087 85771167 -36072689 + ID4 SINE ID 4 83 0 5 1239 312 267 187 29 chr11 85771242 85771381 -36072475 - RSINE1 SINE B4 -2 163 3 5 1239 527 269 131 112 chr11 85771549 85771793 -36072063 - Charlie1a DNA MER1_type -685 770 478 5 1239 519 268 148 16 chr11 85771793 85771975 -36071881 - B3 SINE B2 -10 206 1 5 1239 527 268 109 118 chr11 85771975 85772115 -36071741 - Charlie1a DNA MER1_type -978 477 352 5 1239 453 316 129 70 chr11 85772211 85772483 -36071373 - Charlie1a DNA MER1_type -1128 327 40 5 1239 431 252 9 9 chr11 85772518 85772630 -36071226 + PB1D10 SINE Alu 1 112 -5 5 1239 188 368 51 0 chr11 85772719 85772836 -36071020 + L2c LINE L2 3051 3173 -214 5 1239 271 226 204 29 chr11 85773653 85773790 -36070066 + L1M5 LINE L1 5346 5506 -734 5 1239 21 0 0 0 chr11 85775993 85776014 -36067842 + AT_rich Low_complexity Low_complexity 1 21 0 5 1239 314 324 0 0 chr11 85776078 85776146 -36067710 - RSINE1 SINE B4 -83 82 15 5 1239 352 336 70 21 chr11 85776327 85776470 -36067386 - MIRb SINE MIR -114 154 5 5 1239 333 0 0 0 chr11 85776854 85776891 -36066965 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1239 369 0 0 0 chr11 85777547 85777588 -36066268 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1239 613 193 56 21 chr11 85777930 85778073 -36065783 - B1_Mur1 SINE Alu 0 149 2 5 1239 696 211 38 0 chr11 85778094 85778227 -36065629 - B3 SINE B2 -22 194 57 5 1239 1256 41 0 0 chr11 85778269 85778416 -36065440 - B1_Mus1 SINE Alu 0 148 2 5 1239 268 242 0 70 chr11 85778715 85778786 -36065070 - ID4_ SINE ID -14 69 4 5 1239 603 288 103 72 chr11 85778849 85779026 -36064830 - B4 SINE B4 -8 284 93 5 1239 324 0 0 0 chr11 85779026 85779062 -36064794 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 1239 603 288 103 72 chr11 85779062 85779146 -36064710 - B4 SINE B4 -200 92 15 5 1239 507 201 22 15 chr11 85779152 85779271 -36064585 - PB1D10 SINE Alu -22 127 15 5 1239 573 252 14 7 chr11 85779323 85779467 -36064389 - B1_Mur1 SINE Alu -2 147 3 5 1239 474 282 109 25 chr11 85779488 85779747 -36064109 - L1MEe LINE L1 -749 5397 5120 5 1239 651 257 47 50 chr11 85780241 85780499 -36063357 - L1MEe LINE L1 -1258 4888 4632 5 1239 1222 256 76 6 chr11 85780512 85780854 -36063002 - ORR1D2 LTR MaLR -4 366 1 5 1239 1027 291 14 17 chr11 85780879 85781169 -36062687 - B4A SINE B4 -3 289 1 5 1239 893 275 59 34 chr11 85781169 85781523 -36062333 - L1MEe LINE L1 -1531 4615 4253 5 1239 357 240 0 13 chr11 85781533 85781609 -36062247 - L1MEe LINE L1 -2058 4088 4014 5 1239 226 280 27 0 chr11 85781884 85781959 -36061897 - L1MEe LINE L1 -2595 3551 3475 5 1239 477 205 41 33 chr11 85781980 85782101 -36061755 - B1_Mur1 SINE Alu -6 143 22 5 1239 358 293 139 34 chr11 85782331 85782568 -36061288 - L1MEe LINE L1 -3841 2325 2064 5 1239 831 199 0 0 chr11 85782626 85782772 -36061084 + B1_Mur2 SINE Alu 1 146 -3 5 1239 29 60 0 0 chr11 85783378 85783428 -36060428 + AT_rich Low_complexity Low_complexity 1 50 0 5 1239 256 263 20 29 chr11 85783526 85783628 -36060228 - HAL1 LINE L1 -1159 1348 1248 5 1239 625 288 0 0 chr11 85784096 85784228 -36059628 + RSINE1 SINE B4 11 142 -23 5 1239 251 224 86 78 chr11 85784773 85784889 -36058967 + MT2B LTR ERVL 148 264 -337 5 1239 527 165 0 10 chr11 85784826 85784924 -36058932 + B1_Mus2 SINE Alu 51 147 0 5 1239 309 109 0 0 chr11 85784925 85784971 -36058885 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 5 1239 1292 91 23 0 chr11 85785053 85785228 -36058628 + B2_Mm1t SINE B2 1 179 -14 5 1239 204 219 0 0 chr11 85785253 85785294 -36058562 + A-rich Low_complexity Low_complexity 1 41 0 5 1239 26 0 0 0 chr11 85785913 85785939 -36057917 + AT_rich Low_complexity Low_complexity 1 26 0 5 1239 767 266 82 5 chr11 85786427 85786635 -36057221 + ID_B1 SINE B4 1 224 0 5 1239 527 232 62 14 chr11 85786654 85786798 -36057058 + RSINE1 SINE B4 3 153 -12 5 1239 1034 95 7 0 chr11 85786829 85786966 -36056890 - B1_Mur4 SINE Alu -11 139 2 5 1239 347 314 44 58 chr11 85787488 85787694 -36056162 + MIRb SINE MIR 51 253 -15 5 1239 407 204 136 0 chr11 85787792 85787895 -36055961 + PB1D9 SINE Alu 4 120 0 5 1239 1074 180 70 0 chr11 85791218 85791418 -36052438 - B3 SINE B2 -2 214 1 5 1239 330 138 0 0 chr11 85791800 85791858 -36051998 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1239 233 163 231 0 chr11 85791910 85791980 -36051876 + PB1D10 SINE Alu 11 97 -52 5 1239 300 27 0 0 chr11 85791992 85792029 -36051827 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1239 755 226 84 35 chr11 85792510 85792712 -36051144 - MTD LTR MaLR -189 230 19 5 1239 360 0 0 0 chr11 85792713 85792753 -36051103 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 5 1239 456 161 25 47 chr11 85793380 85793483 -36050373 + PB1D10 SINE Alu 4 103 -17 5 1239 373 267 65 62 chr11 85793541 85793799 -36050057 + B4A SINE B4 41 281 -11 5 1239 616 112 0 20 chr11 85794755 85794855 -36049001 - B1_Mus2 SINE Alu -7 140 43 5 1239 667 190 36 7 chr11 85795730 85795868 -36047988 + B4A SINE B4 150 291 -1 5 1239 1441 70 32 0 chr11 85795906 85796092 -36047764 - B2_Mm2 SINE B2 -2 193 2 5 1239 855 153 29 22 chr11 85796123 85796307 -36047549 + B3 SINE B2 1 188 -7 5 1239 731 265 7 0 chr11 85796630 85796777 -36047079 + RSINE1 SINE B4 1 148 -17 5 1239 453 36 0 0 chr11 85796834 85796889 -36046967 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1239 818 175 67 11 chr11 85796892 85797071 -36046785 - B3 SINE B2 -27 189 1 5 1239 231 261 0 158 chr11 85797273 85797355 -36046501 + B4A SINE B4 90 158 -134 5 1239 430 277 40 0 chr11 85797285 85797386 -36046470 + PB1D10 SINE Alu 9 113 -4 5 1239 582 76 98 0 chr11 85797395 85797487 -36046369 + B2_Mm2 SINE B2 1 101 -94 5 1239 624 111 0 0 chr11 85797609 85797708 -36046148 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 1239 584 249 39 82 chr11 85799248 85799480 -36044376 - ID_B1 SINE B4 0 224 3 5 1239 791 297 21 78 chr11 85800450 85800675 -36043181 - B4A SINE B4 -24 268 58 5 1239 1346 88 17 0 chr11 85800675 85800856 -36043000 - B2_Mm2 SINE B2 -7 188 5 5 1239 791 297 21 78 chr11 85800856 85800911 -36042945 - B4A SINE B4 -235 57 4 5 1239 253 250 9 19 chr11 85801080 85801186 -36042670 + (TA)n Simple_repeat Simple_repeat 2 106 0 5 1239 801 160 14 0 chr11 85801421 85801565 -36042291 - B1_Mur4 SINE Alu 0 150 5 5 1239 441 176 56 56 chr11 85801667 85801775 -36042081 - PB1D10 SINE Alu -7 110 3 5 1239 430 122 0 58 chr11 85802645 85802732 -36041124 - B2_Mm2 SINE B2 -1 194 113 5 1239 272 284 0 0 chr11 85802791 85802858 -36040998 - B4A SINE B4 -8 284 218 5 1239 324 94 0 0 chr11 85803608 85803661 -36040195 + (GGGGA)n Simple_repeat Simple_repeat 2 54 0 5 1239 31 58 0 0 chr11 85804255 85804307 -36039549 + AT_rich Low_complexity Low_complexity 1 52 0 5 1239 325 322 160 20 chr11 85804502 85804752 -36039104 + B4 SINE B4 8 292 0 5 1239 252 296 52 81 chr11 85804728 85804901 -36038955 - RMER12 LTR ERVK -478 844 677 5 1239 195 69 0 0 chr11 85805534 85805563 -36038293 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1239 301 264 33 0 chr11 85806159 85806250 -36037606 + L1MB7 LINE L1 6091 6184 0 5 1239 211 314 87 40 chr11 85806768 85806894 -36036962 - MIR3 SINE MIR -39 169 38 5 1239 1278 113 98 0 chr11 85806927 85807131 -36036725 - URR1B DNA MER1_type 0 225 2 5 1239 868 77 0 0 chr11 85807879 85807996 -36035860 - B1_Mus1 SINE Alu -31 117 1 5 1239 542 207 14 29 chr11 85807996 85808018 -36035838 - ID_B1 SINE B4 -28 196 60 5 1239 21 0 0 0 chr11 85808020 85808041 -36035815 + AT_rich Low_complexity Low_complexity 1 21 0 5 1239 479 197 196 43 chr11 85810029 85810167 -36033689 + ID_B1 SINE B4 54 212 -12 5 1239 21 0 0 0 chr11 85810182 85810203 -36033653 + AT_rich Low_complexity Low_complexity 1 21 0 5 1239 439 278 96 62 chr11 85811437 85811709 -36032147 + B4 SINE B4 2 282 -10 5 1239 369 0 0 0 chr11 85811711 85811752 -36032104 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1239 277 348 7 22 chr11 85812846 85812981 -36030875 - MIR3 SINE MIR -41 167 35 5 1239 473 245 56 28 chr11 85813999 85814142 -36029714 + ID_B1 SINE B4 11 157 -67 5 1239 313 247 100 30 chr11 85814075 85814175 -36029681 + PB1D10 SINE Alu 10 116 -1 5 1239 899 106 26 1 chr11 85814218 85814387 -36029469 - B2_Mm2 SINE B2 -28 188 4 5 1239 501 277 8 8 chr11 85814555 85814675 -36029181 - ID_B1 SINE B4 -10 214 95 5 1239 871 204 76 19 chr11 85815553 85815763 -36028093 + ID_B1 SINE B4 2 223 -1 5 1239 1029 188 75 24 chr11 85815837 85816049 -36027807 + URR1A DNA MER1_type 1 223 -3 5 1239 352 273 40 24 chr11 85816674 85816798 -36027058 + MIRb SINE MIR 22 147 -121 5 1239 625 291 103 20 chr11 85817335 85817637 -36026219 + MARNA DNA Mariner 104 430 -156 5 1239 204 40 0 0 chr11 85818114 85818139 -36025717 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1239 405 237 135 4 chr11 85818154 85818271 -36025585 + B1F SINE Alu 1 128 -19 5 1239 265 355 11 0 chr11 85818359 85818452 -36025404 + PB1D10 SINE Alu 4 97 -20 5 1239 383 56 19 0 chr11 85818641 85818695 -36025161 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1239 500 260 62 142 chr11 85818838 85818956 -36024900 + B4 SINE B4 3 181 -111 5 1239 515 147 67 19 chr11 85818956 85819060 -36024796 + B1_Mm SINE Alu 7 115 -32 5 1239 500 260 62 142 chr11 85819060 85819098 -36024758 + B4 SINE B4 182 241 -51 5 1239 449 280 77 42 chr11 85819089 85819257 -36024599 + B4 SINE B4 119 292 0 5 1239 615 169 41 25 chr11 85819486 85819607 -36024249 - B1_Mur4 SINE Alu -5 145 23 6 1239 347 269 63 63 chr11 85819607 85819628 -36024228 - ID_B1 SINE B4 -4 219 78 6 1239 471 268 84 0 chr11 85820139 85820281 -36023575 + B4A SINE B4 116 269 -23 6 1239 192 97 0 0 chr11 85820281 85820312 -36023544 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1239 1102 89 6 12 chr11 85820923 85821083 -36022773 - B2_Mm2 SINE B2 -35 160 2 6 1239 316 233 119 0 chr11 85822688 85822772 -36021084 - PB1D10 SINE Alu -11 109 16 6 1239 302 102 0 33 chr11 85822793 85822854 -36021002 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1239 1224 48 0 0 chr11 85822858 85823004 -36020852 - B1_Mus2 SINE Alu 0 147 2 6 1239 251 140 0 20 chr11 85823200 85823251 -36020605 + (CACCC)n Simple_repeat Simple_repeat 1 50 0 6 1239 1127 101 32 32 chr11 85823428 85823613 -36020243 + B2_Mm2 SINE B2 1 185 -10 6 1239 277 234 295 9 chr11 85823707 85823819 -36020037 - RSINE1 SINE B4 -19 146 3 6 1239 2053 142 85 20 chr11 85823906 85824352 -36019504 + RMER6A LTR ERVK 282 756 0 6 1239 205 89 22 22 chr11 85824558 85824604 -36019252 + (TTTTTG)n Simple_repeat Simple_repeat 6 51 0 6 1239 1134 109 0 0 chr11 85824604 85824751 -36019105 - B1_Mus1 SINE Alu 0 148 2 6 1239 2231 124 12 0 chr11 85824779 85825101 -36018755 + ORR1A3 LTR MaLR 1 326 0 6 1239 889 237 242 18 chr11 85825142 85825258 -36018598 - Lx8 LINE L1 -15 7458 7270 6 1239 279 0 0 0 chr11 85825258 85825289 -36018567 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1239 889 237 242 18 chr11 85825289 85825503 -36018353 - Lx8 LINE L1 -204 7269 7056 6 1239 7928 47 1 1 chr11 85825638 85826584 -36017272 - L1_Mus1 LINE L1 0 6567 5622 6 1239 737 178 0 23 chr11 85826584 85826716 -36017140 + B1_Mur1 SINE Alu 14 142 -7 6 1239 220 274 0 0 chr11 85827428 85827479 -36016377 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1239 512 315 39 20 chr11 85827481 85827685 -36016171 - B4A SINE B4 -5 287 80 6 1239 641 200 0 17 chr11 85827725 85827842 -36016014 - PB1D7 SINE Alu -1 119 5 6 1239 24 32 0 0 chr11 85827849 85827880 -36015976 + AT_rich Low_complexity Low_complexity 1 31 0 6 1239 247 306 40 10 chr11 85827946 85828045 -36015811 - PB1D10 SINE Alu -12 105 4 6 1239 414 274 84 13 chr11 85828045 85828116 -36015740 - ID SINE ID -140 84 3 6 1239 526 195 0 89 chr11 85828239 85828363 -36015493 - B1_Mur1 SINE Alu -35 114 2 6 1239 285 303 10 10 chr11 85828503 85828603 -36015253 + BC1_Mm scRNA scRNA 3 102 -50 6 1239 834 197 88 34 chr11 85828682 85828887 -36014969 + B3 SINE B2 1 216 0 6 1239 604 180 94 36 chr11 85828908 85829046 -36014810 + B1_Mur2 SINE Alu 1 146 -3 6 1239 339 25 0 0 chr11 85831832 85831872 -36011984 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1239 412 224 27 45 chr11 85832218 85832330 -36011526 - PB1D7 SINE Alu -1 119 10 6 1239 1034 97 28 0 chr11 85832372 85832516 -36011340 + B1_Mur3 SINE Alu 1 148 -1 6 1239 392 305 36 96 chr11 85832708 85832808 -36011048 + RSINE1 SINE B4 3 93 -72 6 1239 1511 203 74 50 chr11 85832808 85833171 -36010685 + ORR1D1 LTR MaLR 3 374 0 6 1239 444 305 36 96 chr11 85833171 85833237 -36010619 + RSINE1 SINE B4 94 159 -6 6 1239 438 293 67 80 chr11 85833508 85833874 -36009982 - ORR1E LTR MaLR 0 379 1 6 1239 1725 230 13 34 chr11 85833942 85834324 -36009532 - ORR1D1 LTR MaLR 0 374 1 6 1239 258 245 19 122 chr11 85834487 85834594 -36009262 - B1_Mur4 SINE Alu -10 140 45 6 1239 299 281 105 56 chr11 85835136 85835298 -36008558 + MER77 LTR ERVL 406 575 -32 6 1239 552 299 0 15 chr11 85835650 85835786 -36008070 + RSINE1 SINE B4 1 134 -31 6 1239 332 100 43 0 chr11 85836398 85836468 -36007388 + Lx2A1 LINE L1 6918 6990 -18 6 1239 1188 103 0 0 chr11 85836468 85836642 -36007214 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 6 1239 741 160 8 0 chr11 85837228 85837347 -36006509 - B1_Mus1 SINE Alu -26 122 3 6 1239 182 211 0 34 chr11 85840652 85840711 -36003145 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 6 1239 420 20 0 0 chr11 85841589 85841638 -36002218 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1239 325 319 30 24 chr11 85842385 85842549 -36001307 + L1MEg LINE L1 1103 1267 -4817 6 1239 285 207 47 35 chr11 85842653 85842738 -36001118 + RMER12 LTR ERVK 748 833 -489 6 1239 1026 215 51 5 chr11 85842739 85842935 -36000921 - B3 SINE B2 -11 205 1 6 1239 303 214 26 79 chr11 85842943 85843065 -36000791 + L1MEg LINE L1 1356 1484 -4524 6 1239 2072 151 25 25 chr11 85843099 85843458 -36000398 - RLTR15 LTR ERVK 0 359 1 6 1239 211 143 24 0 chr11 85843513 85843555 -36000301 + T-rich Low_complexity Low_complexity 6 48 0 6 1239 472 242 84 46 chr11 85843567 85843795 -36000061 - L1M4 LINE L1 -1902 4244 3976 6 1239 1035 95 73 0 chr11 85843881 85844018 -35999838 - B1_Mus1 SINE Alu 0 148 2 6 1239 1766 114 45 11 chr11 85844085 85844236 -35999620 + Lx LINE L1 6374 6522 -132 6 1239 189 0 0 0 chr11 85844236 85844257 -35999599 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 6 1239 1766 114 45 11 chr11 85844257 85844371 -35999485 + Lx LINE L1 6523 6647 -7 6 1239 253 320 18 72 chr11 85844718 85844829 -35999027 + MTEb LTR MaLR 275 379 0 6 1239 285 341 134 28 chr11 85844864 85845081 -35998775 - L1MD2 LINE L1 -217 6142 5903 6 1239 1026 278 125 92 chr11 85845081 85845775 -35998081 - MLT2B5 LTR ERVL 0 717 1 6 1239 426 306 90 0 chr11 85846647 85846781 -35997075 + RSINE1 SINE B4 7 152 -13 6 1239 708 23 0 0 chr11 85846789 85846875 -35996981 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1239 241 96 4 0 chr11 85847383 85847420 -35996436 - B1F SINE Alu -15 134 68 6 1239 7853 94 56 11 chr11 85847882 85849037 -35994819 + Lx3_Mus LINE L1 5803 7009 0 6 1239 279 0 0 0 chr11 85849087 85849118 -35994738 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 6 1239 982 158 98 12 chr11 85849118 85849291 -35994565 - B3 SINE B2 -16 200 13 6 1239 22 56 0 0 chr11 85849299 85849335 -35994521 + AT_rich Low_complexity Low_complexity 1 36 0 6 1239 935 205 18 54 chr11 85850041 85850263 -35993593 + B3 SINE B2 1 214 -2 6 1239 337 392 0 0 chr11 85850544 85850646 -35993210 + PB1 SINE Alu 6 107 -20 6 1239 2434 88 19 74 chr11 85850727 85851106 -35992750 + RLTR15 LTR ERVK 2 359 0 6 1239 587 186 19 6 chr11 85851142 85851299 -35992557 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 6 1239 315 0 0 0 chr11 85851473 85851508 -35992348 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1239 28 0 0 0 chr11 85851909 85851937 -35991919 + AT_rich Low_complexity Low_complexity 1 28 0 6 1240 861 239 61 5 chr11 85853560 85853758 -35990098 + B3 SINE B2 8 216 0 6 1240 714 289 51 65 chr11 85853965 85854472 -35989384 - L1ME3B LINE L1 -364 5876 5408 6 1240 614 237 0 0 chr11 85854611 85854725 -35989131 - B3 SINE B2 -6 210 97 6 1240 386 310 49 0 chr11 85854713 85854855 -35989001 + Tigger7 DNA MER2_type 287 435 -2056 6 1240 244 240 88 20 chr11 85854891 85854993 -35988863 + L1MEf LINE L1 760 868 -5443 6 1240 299 293 122 29 chr11 85855253 85855594 -35988262 + L1MEf LINE L1 1125 1569 -4848 6 1240 992 144 14 7 chr11 85855619 85855766 -35988090 + B1_Mus1 SINE Alu 1 148 0 6 1240 9755 86 38 32 chr11 85855824 85857310 -35986546 + MusHAL1 LINE L1 582 2075 -637 6 1240 1194 43 0 0 chr11 85857310 85857448 -35986408 + B1_Mm SINE Alu 1 138 -9 6 1240 282 29 0 0 chr11 85857448 85857483 -35986373 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1240 687 58 0 0 chr11 85857596 85857682 -35986174 + ORR1A3 LTR MaLR 193 278 -48 6 1240 1382 61 38 16 chr11 85857691 85857845 -35986011 + B2_Mm1t SINE B2 1 158 -35 6 1240 216 0 0 0 chr11 85857845 85857869 -35985987 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1240 1382 61 38 16 chr11 85857869 85857897 -35985959 + B2_Mm1t SINE B2 159 187 -6 6 1240 260 268 42 0 chr11 85857897 85857968 -35985888 + L1MEf LINE L1 1573 1646 -4862 6 1240 363 235 73 12 chr11 85857984 85858066 -35985790 + B1F SINE Alu 18 104 -45 6 1240 288 0 0 0 chr11 85858191 85858223 -35985633 + (TTGG)n Simple_repeat Simple_repeat 1 32 0 6 1240 278 259 67 134 chr11 85858336 85858470 -35985386 + MTEa LTR MaLR 51 175 -204 6 1240 495 336 38 71 chr11 85858397 85858765 -35985091 + MT2A LTR ERVL 102 457 -76 6 1240 645 286 25 67 chr11 85858818 85859058 -35984798 + L1MCa LINE L1 528 757 -5751 6 1240 351 244 74 16 chr11 85859102 85859223 -35984633 + B1F1 SINE Alu 1 128 -21 6 1240 242 56 0 27 chr11 85859381 85859418 -35984438 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 1240 709 247 105 0 chr11 85859430 85859592 -35984264 + B3 SINE B2 33 211 -5 6 1240 322 313 135 19 chr11 85859611 85859826 -35984030 + L1MCa LINE L1 928 1167 -5341 6 1240 220 272 28 56 chr11 85859839 85859918 -35983938 + ID4_ SINE ID 11 87 -65 6 1240 378 0 0 0 chr11 85859924 85859966 -35983890 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1240 301 248 22 127 chr11 85859970 85860053 -35983803 + L1MCa LINE L1 1193 1278 -5230 6 1240 1118 141 43 0 chr11 85860053 85860237 -35983619 + B2_Mm2 SINE B2 2 193 -2 6 1240 301 248 22 127 chr11 85860237 85860287 -35983569 + L1MCa LINE L1 1279 1312 -5196 6 1240 764 263 159 0 chr11 85860458 85860766 -35983090 + L1MCa LINE L1 1401 1757 -4751 6 1240 789 269 84 67 chr11 85860768 85861139 -35982717 + MLT1B LTR MaLR 9 385 -5 6 1240 337 337 78 25 chr11 85861998 85862202 -35981654 - MIR SINE MIR -29 233 19 6 1240 585 0 0 0 chr11 85862215 85862280 -35981576 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 1240 195 42 0 0 chr11 85862282 85862306 -35981550 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1240 1133 204 9 36 chr11 85862319 85862538 -35981318 + B3 SINE B2 4 216 0 6 1240 269 88 379 45 chr11 85863500 85863608 -35980248 - B2_Mm2 SINE B2 -5 190 47 6 1240 231 77 26 0 chr11 85863655 85863694 -35980162 - B2_Mm1t SINE B2 -14 179 140 6 1240 259 163 0 0 chr11 85863692 85863740 -35980116 - B1F SINE Alu -60 57 10 6 1240 192 77 0 0 chr11 85863854 85863880 -35979976 + (CAT)n Simple_repeat Simple_repeat 2 27 0 7 1240 512 167 11 11 chr11 85863880 85863971 -35979885 - B1F2 SINE Alu -14 135 45 7 1240 935 168 7 0 chr11 85865412 85865561 -35978295 - B3 SINE B2 -44 172 23 7 1240 23 0 0 0 chr11 85865577 85865600 -35978256 + AT_rich Low_complexity Low_complexity 1 23 0 7 1240 623 280 21 0 chr11 85866787 85866930 -35976926 + RSINE1 SINE B4 3 148 -17 7 1240 970 102 88 0 chr11 85867256 85867393 -35976463 - B1_Mur4 SINE Alu 0 150 2 7 1240 410 275 78 21 chr11 85867910 85868051 -35975805 + B1F2 SINE Alu 1 149 0 7 1240 465 184 0 0 chr11 85868149 85868225 -35975631 + B3 SINE B2 2 77 -139 7 1240 279 79 0 0 chr11 85868225 85868263 -35975593 + (CCTG)n Simple_repeat Simple_repeat 1 38 0 7 1240 189 0 0 0 chr11 85868336 85868357 -35975499 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 7 1240 807 177 56 14 chr11 85868697 85868840 -35975016 + B1_Mur3 SINE Alu 1 149 0 7 1240 22 56 0 0 chr11 85868840 85868876 -35974980 + AT_rich Low_complexity Low_complexity 1 36 0 7 1240 3866 128 12 7 chr11 85869438 85870030 -35973826 + RLTR17 LTR ERVK 98 692 0 7 1240 919 167 210 11 chr11 85870509 85870685 -35973171 - B3 SINE B2 -5 211 1 7 1240 1790 132 147 0 chr11 85870961 85871288 -35972568 + ORR1B1 LTR MaLR 3 377 -17 7 1240 260 284 60 0 chr11 85872162 85872229 -35971627 + ID4 SINE ID 1 71 -12 7 1240 4603 124 67 13 chr11 85872243 85872960 -35970896 + RMER6A LTR ERVK 1 756 0 7 1240 915 154 42 0 chr11 85873238 85873381 -35970475 - B1_Mur4 SINE Alu 0 150 2 7 1240 3540 28 20 8 chr11 85873433 85873828 -35970028 - MTB LTR MaLR 0 400 1 7 1240 1379 88 28 0 chr11 85874310 85874491 -35969365 - B2_Mm1a SINE B2 -7 186 1 7 1240 920 132 26 46 chr11 85875635 85875786 -35968070 - B1_Mur2 SINE Alu 0 149 2 7 1240 247 364 48 41 chr11 85876150 85876296 -35967560 - MIR3 SINE MIR -57 151 5 7 1240 290 306 0 0 chr11 85876406 85876491 -35967365 - MER58B DNA MER1_type -17 324 240 7 1240 4204 108 40 13 chr11 85876670 85877272 -35966584 - Lx LINE L1 0 6654 6037 7 1240 4459 123 7 10 chr11 85877272 85877980 -35965876 - L1_Mur2 LINE L1 -1761 4116 3411 7 1240 253 317 39 10 chr11 85878759 85878861 -35964995 - Tigger5 DNA MER2_type -12 2394 2290 7 1240 466 354 142 0 chr11 85878856 85879068 -35964788 - Tigger5 DNA MER2_type -2164 242 1 7 1240 448 300 53 13 chr11 85879123 85879275 -35964581 + RSINE1 SINE B4 3 160 -5 7 1240 222 37 0 0 chr11 85879809 85879836 -35964020 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 7 1240 727 285 23 23 chr11 85879926 85880145 -35963711 - B4A SINE B4 -72 220 2 7 1240 1208 98 42 47 chr11 85880246 85880438 -35963418 - B2_Mm2 SINE B2 -3 192 2 7 1240 836 281 25 38 chr11 85881188 85881428 -35962428 - B4A SINE B4 -55 237 1 7 1240 1158 252 18 18 chr11 85881786 85882065 -35961791 + B4 SINE B4 2 280 -12 7 1240 530 290 77 10 chr11 85882148 85882343 -35961513 + L1MB1 LINE L1 894 1101 -5668 7 1240 1224 68 0 0 chr11 85882766 85882913 -35960943 + B1_Mus1 SINE Alu 1 147 -1 7 1240 950 16 31 0 chr11 85882916 85883044 -35960812 + (GAGAA)n Simple_repeat Simple_repeat 2 133 0 7 1240 414 238 13 50 chr11 85883097 85883256 -35960600 + L1MB1 LINE L1 1543 1695 -5084 7 1240 717 12 0 0 chr11 85883519 85883601 -35960255 + (CAAAG)n Simple_repeat Simple_repeat 1 82 0 7 1240 660 241 15 0 chr11 85883604 85883737 -35960119 + B1_Mur1 SINE Alu 15 149 0 7 1240 533 333 0 7 chr11 85883749 85883891 -35959965 + B1F SINE Alu 1 141 -8 7 1240 688 256 90 21 chr11 85883908 85884193 -35959663 + L1MB1 LINE L1 2045 2571 -4278 7 1240 265 264 19 0 chr11 85884284 85884337 -35959519 - ID4_ SINE ID -21 62 9 7 1240 29 60 0 0 chr11 85884378 85884428 -35959428 + AT_rich Low_complexity Low_complexity 1 50 0 7 1240 486 122 0 27 chr11 85884439 85884549 -35959307 + (TTTC)n Simple_repeat Simple_repeat 1 107 0 7 1240 931 174 0 0 chr11 85884561 85884699 -35959157 - B1_Mus1 SINE Alu -6 142 5 7 1240 683 284 95 34 chr11 85884759 85885022 -35958834 + B4 SINE B4 2 280 -12 7 1240 2058 207 58 109 chr11 85885116 85885195 -35958661 + RMER15 LTR ERVL 1 66 -509 7 1240 993 128 254 6 chr11 85885195 85885376 -35958480 - URR1A DNA MER1_type 0 226 1 7 1240 2058 207 58 109 chr11 85885376 85885851 -35958005 + RMER15 LTR ERVL 67 533 -42 7 1240 1181 88 0 0 chr11 85885851 85885998 -35957858 - B1_Mus2 SINE Alu 0 147 1 7 1240 2058 207 58 109 chr11 85885998 85886048 -35957808 + RMER15 LTR ERVL 534 575 0 7 1240 430 307 30 38 chr11 85886106 85886222 -35957634 + B1F SINE Alu 19 136 -13 7 1240 195 42 0 0 chr11 85886222 85886246 -35957610 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1240 430 307 30 38 chr11 85886246 85886261 -35957595 + B1F SINE Alu 137 148 -1 7 1240 231 267 52 72 chr11 85886276 85886373 -35957483 + MT2B2 LTR ERVL 163 257 -327 7 1240 2804 124 99 22 chr11 85886413 85886876 -35956980 - RLTR19 LTR ERVK 0 499 1 7 1240 944 109 14 0 chr11 85886966 85887104 -35956752 - B1_Mur4 SINE Alu -1 149 10 7 1240 366 228 47 109 chr11 85886998 85887126 -35956730 - MT2B LTR ERVL -337 264 145 7 1240 271 229 73 0 chr11 85887126 85887222 -35956634 + L1MB1 LINE L1 5673 5775 -1067 7 1240 762 264 134 38 chr11 85887291 85887708 -35956148 + L1MB1 LINE L1 6390 6846 -24 7 1240 924 272 17 45 chr11 85888601 85888893 -35954963 + B4A SINE B4 1 284 -8 7 1240 856 182 59 32 chr11 85888990 85889177 -35954679 - B2_Mm2 SINE B2 0 195 4 7 1240 23 0 0 0 chr11 85889292 85889315 -35954541 + AT_rich Low_complexity Low_complexity 1 23 0 7 1240 280 157 19 38 chr11 85889322 85889375 -35954481 - B2_Mm2 SINE B2 -97 98 47 7 1240 1204 84 24 0 chr11 85889411 85889577 -35954279 - B2_Mm1t SINE B2 -22 171 2 7 1240 520 14 145 0 chr11 85890142 85890211 -35953645 + B2_Mm2 SINE B2 2 80 -115 7 1240 26 30 0 0 chr11 85890211 85890244 -35953612 + AT_rich Low_complexity Low_complexity 1 33 0 7 1240 250 235 148 0 chr11 85891779 85891860 -35951996 - L1ME1 LINE L1 -199 5980 5888 7 1240 1464 158 123 62 chr11 85891951 85892308 -35951548 + ORR1C2 LTR MaLR 2 380 -4 7 1240 1398 32 0 46 chr11 85892379 85892573 -35951283 + L1Md_F3 LINE L1 6385 6569 -15 7 1240 2181 222 118 24 chr11 85892578 85893172 -35950684 - RMER1B Other Other -16 1050 401 7 1240 289 280 0 51 chr11 85893403 85893501 -35950355 - RMER1B Other Other -915 151 59 7 1240 271 282 29 0 chr11 85893623 85893726 -35950130 - L1MEc LINE L1 -4042 2358 2253 7 1240 984 135 194 11 chr11 85893783 85893963 -35949893 - B3 SINE B2 0 216 4 7 1240 953 194 96 14 chr11 85894003 85894212 -35949644 - URR1A DNA MER1_type 0 226 1 7 1240 252 278 142 0 chr11 85894212 85894374 -35949482 - L1MEc LINE L1 -4270 2130 1946 7 1240 256 275 43 48 chr11 85894398 85894585 -35949271 - L1MD3 LINE L1 -16 7979 7794 7 1240 384 152 266 0 chr11 85894793 85894872 -35948984 + PB1D9 SINE Alu 9 108 -12 7 1240 228 35 0 0 chr11 85894952 85894981 -35948875 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1240 397 179 116 6 chr11 85894982 85895078 -35948778 - PB1D7 SINE Alu -8 112 10 7 1240 317 221 98 15 chr11 85895266 85895399 -35948457 - L1MEc LINE L1 -5035 1365 1222 7 1240 231 197 66 0 chr11 85896337 85896398 -35947458 + L1MEb LINE L1 721 785 -5285 7 1240 614 252 87 13 chr11 85896411 85896560 -35947296 + B3A SINE B2 1 160 -38 7 1240 210 37 0 0 chr11 85896593 85896620 -35947236 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1240 22 0 0 0 chr11 85896688 85896710 -35947146 + AT_rich Low_complexity Low_complexity 1 22 0 7 1240 911 265 84 25 chr11 85896710 85896985 -35946871 - B4A SINE B4 0 292 2 7 1240 243 268 14 27 chr11 85897193 85897266 -35946590 + ID4_ SINE ID 2 73 -10 7 1240 1017 287 53 30 chr11 85897397 85897734 -35946122 + MER2 DNA MER2_type 1 345 0 7 1240 340 239 128 0 chr11 85898382 85898491 -35945365 + PB1 SINE Alu 1 123 -4 7 1240 767 137 14 35 chr11 85900076 85900220 -35943636 - B1_Mur3 SINE Alu 0 149 9 7 1240 21 0 0 0 chr11 85900225 85900246 -35943610 + AT_rich Low_complexity Low_complexity 1 21 0 7 1240 579 191 137 0 chr11 85900386 85900517 -35943339 + B1_Mur3 SINE Alu 1 149 0 7 1240 720 280 0 45 chr11 85900721 85900897 -35942959 - B3A SINE B2 -30 168 1 7 1240 475 192 180 16 chr11 85901122 85901244 -35942612 + B1F1 SINE Alu 6 147 -2 7 1240 1274 267 85 21 chr11 85901244 85901728 -35942128 + L1MA5A LINE L1 5048 5602 -698 7 1240 306 67 0 0 chr11 85901728 85901773 -35942083 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 1240 180 0 0 0 chr11 85901783 85901803 -35942053 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1240 1274 255 77 16 chr11 85901803 85902083 -35941773 + L1MA5A LINE L1 5627 5923 -374 7 1240 31 0 0 0 chr11 85902727 85902758 -35941098 + AT_rich Low_complexity Low_complexity 1 31 0 7 1240 389 259 9 35 chr11 85903708 85903824 -35940032 + PB1D10 SINE Alu 5 117 0 7 1240 462 36 0 0 chr11 85904644 85904700 -35939156 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1240 279 0 0 0 chr11 85904929 85904960 -35938896 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1240 31031 77 6 24 chr11 85905029 85905852 -35938004 - L1Md_F2 LINE L1 -1 6581 5779 7 1240 1690 21 0 0 chr11 85905852 85906042 -35937814 + B2_Mm1a SINE B2 2 191 -2 7 1240 31031 59 13 5 chr11 85906042 85910190 -35933666 - L1Md_F2 LINE L1 -105 5778 1588 7 1240 1024 100 156 0 chr11 85910197 85910357 -35933499 - B2_Mm2 SINE B2 -10 185 1 7 1240 230 261 28 84 chr11 85910444 85910515 -35933341 + PB1D10 SINE Alu 7 73 -44 7 1240 506 301 55 94 chr11 85910576 85910892 -35932964 + B4 SINE B4 1 292 0 7 1240 279 169 56 0 chr11 85910898 85910969 -35932887 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1240 388 267 0 19 chr11 85911455 85911558 -35932298 + PB1D10 SINE Alu 2 102 -15 7 1240 306 263 12 50 chr11 85912189 85912269 -35931587 + B4A SINE B4 1 77 -215 7 1240 367 214 59 12 chr11 85912588 85912673 -35931183 - PB1D10 SINE Alu -17 100 12 7 1240 329 258 64 11 chr11 85912591 85912685 -35931171 - ID_B1 SINE B4 -48 176 78 7 1240 290 292 0 0 chr11 85913248 85913313 -35930543 + ID4_ SINE ID 7 71 -12 8 1240 226 358 84 17 chr11 85913649 85913828 -35930028 - LTR88b LTR Gypsy? -485 352 162 8 1240 299 356 79 59 chr11 85913828 85914288 -35929568 + L2b LINE L2 2858 3326 -49 8 1240 530 244 194 9 chr11 85915466 85915612 -35928244 + MLT1E1A LTR MaLR 380 575 -105 8 1240 692 222 28 0 chr11 85915709 85915853 -35928003 + B1_Mur1 SINE Alu 2 149 0 8 1240 21 0 0 0 chr11 85916029 85916050 -35927806 + AT_rich Low_complexity Low_complexity 1 21 0 8 1240 381 200 0 67 chr11 85916050 85916061 -35927795 + B4 SINE B4 80 85 -207 8 1240 453 167 0 0 chr11 85916061 85916127 -35927729 + B1_Mur3 SINE Alu 1 66 -83 8 1240 354 269 22 58 chr11 85916473 85916611 -35927245 + L1M4c LINE L1 2355 2487 -3897 8 1240 1998 114 65 10 chr11 85917025 85917334 -35926522 + ORR1A3 LTR MaLR 1 326 0 8 1240 229 235 64 101 chr11 85917391 85917500 -35926356 + PB1D9 SINE Alu 16 120 0 8 1240 388 243 97 91 chr11 85917414 85917568 -35926288 + B4A SINE B4 132 286 -6 8 1240 741 140 0 0 chr11 85917629 85917765 -35926091 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 8 1240 1371 93 234 0 chr11 85918204 85918461 -35925395 + L1VL2 LINE L1 274 590 -5745 8 1240 3268 103 14 2 chr11 85918466 85918981 -35924875 + MusHAL1 LINE L1 1291 1811 -901 8 1240 932 65 0 7 chr11 85918979 85919118 -35924738 - MusHAL1 LINE L1 -703 2009 1872 8 1240 469 101 13 0 chr11 85919148 85919227 -35924629 + MusHAL1 LINE L1 2006 2085 -627 8 1240 288 125 53 18 chr11 85919315 85919372 -35924484 + RMER16 LTR ERVK 391 449 -84 8 1240 180 0 0 0 chr11 85919676 85919696 -35924160 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 1240 952 141 39 0 chr11 85919696 85919852 -35924004 - B2_Mm2 SINE B2 -33 162 1 8 1240 640 291 140 78 chr11 85920891 85921312 -35922544 + MLT2B5 LTR ERVL 147 593 -8 8 1240 899 155 86 6 chr11 85921405 85921580 -35922276 - URR1B DNA MER1_type 0 225 37 8 1240 311 333 36 89 chr11 85921937 85922105 -35921751 - MER5A DNA MER1_type -29 160 2 8 1240 678 189 0 86 chr11 85922597 85922759 -35921097 + B1_Mur3 SINE Alu 1 148 -1 8 1240 207 0 0 0 chr11 85922781 85922804 -35921052 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1240 345 257 40 0 chr11 85922805 85922879 -35920977 - B1F1 SINE Alu -69 80 4 8 1240 362 318 64 0 chr11 85922883 85922993 -35920863 - PB1D10 SINE Alu 0 117 1 8 1240 255 211 155 0 chr11 85923028 85923099 -35920757 + B3 SINE B2 126 207 -9 8 1240 232 293 98 29 chr11 85923230 85923332 -35920524 - PB1D10 SINE Alu -6 111 3 8 1240 469 127 25 12 chr11 85923357 85923437 -35920419 + PB1D9 SINE Alu 40 120 0 8 1240 357 187 0 133 chr11 85923603 85923708 -35920148 + MT2B LTR ERVL 174 264 -337 8 1240 970 39 0 8 chr11 85923615 85923743 -35920113 + B1_Mm SINE Alu 21 147 0 8 1240 258 143 0 0 chr11 85923755 85923804 -35920052 + (A)n Simple_repeat Simple_repeat 1 49 0 8 1240 3692 105 13 18 chr11 85924075 85924618 -35919238 + Lx LINE L1 6110 6649 -5 8 1240 275 321 0 24 chr11 85924629 85924712 -35919144 + ID4 SINE ID 3 83 0 8 1240 233 80 0 74 chr11 85925553 85925566 -35918290 + A-rich Low_complexity Low_complexity 1 11 0 8 1240 1231 34 7 0 chr11 85925566 85925712 -35918144 + B1_Mus1 SINE Alu 2 148 0 8 1240 233 80 0 74 chr11 85925712 85925752 -35918104 + A-rich Low_complexity Low_complexity 12 50 0 8 1240 472 214 116 0 chr11 85926131 85926243 -35917613 + B2_Mm1t SINE B2 66 190 -3 8 1240 573 205 0 0 chr11 85926244 85926366 -35917490 + GA-rich Low_complexity Low_complexity 1 122 0 8 1240 240 325 39 0 chr11 85926366 85926443 -35917413 + ID4 SINE ID 1 80 -3 8 1240 262 250 152 73 chr11 85926717 85926868 -35916988 + RSINE1 SINE B4 3 165 0 8 1240 181 119 48 0 chr11 85926956 85926998 -35916858 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1240 379 292 119 50 chr11 85927239 85927617 -35916239 + L1M3 LINE L1 2244 2647 -3493 8 1240 369 319 97 0 chr11 85927681 85927794 -35916062 + RSINE1 SINE B4 1 124 -41 8 1240 507 17 0 0 chr11 85927795 85927855 -35916001 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1240 693 249 36 25 chr11 85927855 85928131 -35915725 + L1M3 LINE L1 2757 3035 -3105 8 1240 373 287 0 19 chr11 85928138 85928241 -35915615 + PB1D10 SINE Alu 10 110 -7 8 1240 252 312 0 15 chr11 85928248 85928313 -35915543 + ID4 SINE ID 16 79 -4 8 1240 337 261 87 25 chr11 85928335 85928479 -35915377 + L1M3 LINE L1 3132 3285 -2858 8 1240 1167 54 7 0 chr11 85928479 85928626 -35915230 + B1_Mus1 SINE Alu 1 148 0 8 1240 337 261 87 25 chr11 85928626 85928642 -35915214 + L1M3 LINE L1 3286 3302 -2841 8 1240 672 283 6 6 chr11 85928792 85928952 -35914904 - RSINE1 SINE B4 -2 163 4 8 1240 496 214 82 30 chr11 85928982 85929119 -35914737 + B3 SINE B2 1 144 -49 8 1240 762 88 0 0 chr11 85929119 85929244 -35914612 + (CA)n Simple_repeat Simple_repeat 2 126 0 8 1240 397 244 112 106 chr11 85929244 85929294 -35914562 + B2_Mm1a SINE B2 145 189 -4 8 1240 274 347 110 31 chr11 85929294 85929537 -35914319 + L2 LINE L2 2575 2817 -602 8 1240 763 263 24 9 chr11 85929537 85929748 -35914108 + ID_B1 SINE B4 2 215 -9 8 1240 274 347 110 31 chr11 85929748 85929894 -35913962 + L2 LINE L2 2818 2995 -424 8 1240 1409 75 0 16 chr11 85930018 85930208 -35913648 + B2_Mm2 SINE B2 1 187 -8 8 1240 774 288 40 96 chr11 85930260 85930613 -35913243 - MLT1A LTR MaLR -13 361 29 8 1240 1095 53 0 0 chr11 85930617 85930768 -35913088 + (CA)n Simple_repeat Simple_repeat 1 151 0 8 1240 236 300 50 100 chr11 85933575 85933598 -35910258 + MT2B LTR ERVL 138 232 -369 8 1240 397 273 0 0 chr11 85933598 85933675 -35910181 + PB1D9 SINE Alu 1 77 -43 8 1240 281 204 169 20 chr11 85933626 85933741 -35910115 - RMER17D2 LTR ERVK -255 554 410 8 1240 1396 18 12 0 chr11 85933741 85933912 -35909944 + (GAA)n Simple_repeat Simple_repeat 3 175 0 8 1240 281 204 169 20 chr11 85933912 85933991 -35909865 - RMER17D2 LTR ERVK -400 409 332 8 1240 688 321 16 0 chr11 85934067 85934313 -35909543 + Lx7 LINE L1 6946 7195 -501 8 1240 4452 39 2 7 chr11 85934323 85934889 -35908967 + MERVL-int LTR ERVL 88 650 -4835 8 1240 2039 258 95 105 chr11 85934902 85936756 -35907100 + L1M2 LINE L1 2492 4327 -1816 8 1240 280 306 18 18 chr11 85937010 85937120 -35906736 + GA-rich Low_complexity Low_complexity 5 114 0 8 1240 2183 132 6 0 chr11 85937437 85937764 -35906092 + ORR1A4 LTR MaLR 1 329 0 8 1240 410 297 24 59 chr11 85938537 85938713 -35905143 + MTEa LTR MaLR 75 244 -135 8 1240 330 325 85 8 chr11 85938667 85938785 -35905071 - ID_B1 SINE B4 -92 132 6 8 1240 245 294 87 14 chr11 85939008 85939146 -35904710 + B1F SINE Alu 2 149 0 8 1240 397 299 144 22 chr11 85939322 85939503 -35904353 + MLT1F2 LTR MaLR 358 560 0 8 1240 1043 66 0 14 chr11 85939809 85939947 -35903909 + B1_Mm SINE Alu 12 147 0 8 1240 360 191 0 0 chr11 85939947 85940031 -35903825 + A-rich Low_complexity Low_complexity 1 84 0 8 1240 826 306 63 32 chr11 85940031 85940585 -35903271 + L1MCb LINE L1 40 610 -5435 8 1240 415 243 93 0 chr11 85940815 85940922 -35902934 + B1_Mur2 SINE Alu 33 149 0 8 1240 201 39 0 0 chr11 85940957 85940983 -35902873 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1240 21 36 0 0 chr11 85941134 85941162 -35902694 + AT_rich Low_complexity Low_complexity 1 28 0 8 1240 234 62 0 0 chr11 85941219 85941251 -35902605 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1240 222 37 0 0 chr11 85941252 85941279 -35902577 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 8 1240 720 173 23 23 chr11 85941284 85941414 -35902442 + B1_Mur2 SINE Alu 14 143 -6 8 1240 249 323 13 113 chr11 85941473 85941623 -35902233 + B1F2 SINE Alu 14 148 -1 8 1240 247 222 19 143 chr11 85941652 85941757 -35902099 + MT2B LTR ERVL 145 236 -365 8 1240 375 200 81 40 chr11 85941686 85941785 -35902071 + PB1D9 SINE Alu 5 107 -13 8 1240 234 0 0 0 chr11 85941785 85941811 -35902045 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 8 1240 466 280 67 33 chr11 85942038 85942278 -35901578 + L1MB7 LINE L1 5880 6127 -57 8 1240 959 244 14 5 chr11 85942281 85942495 -35901361 - B3 SINE B2 0 216 1 8 1240 417 244 12 0 chr11 85942579 85942661 -35901195 - B3A SINE B2 -114 84 2 8 1240 333 257 57 9 chr11 85942936 85943042 -35900814 - ORR1E LTR MaLR -248 111 1 8 1240 1267 307 37 23 chr11 85943042 85943574 -35900282 - MTE-int LTR MaLR -53 1527 912 8 1240 475 245 82 0 chr11 85943584 85943682 -35900174 + PB1D10 SINE Alu 2 107 -10 8 1240 210 224 110 82 chr11 85943683 85943756 -35900100 + ID4 SINE ID 9 83 0 8 1240 3055 127 28 22 chr11 85943786 85944294 -35899562 + RLTR28 LTR ERVL 3 513 -11 8 1240 425 306 42 47 chr11 85944305 85944497 -35899359 - MTE-int LTR MaLR -678 902 712 8 1240 521 316 272 6 chr11 85944664 85944976 -35898880 - MTE-int LTR MaLR -1163 417 23 8 1240 328 306 95 16 chr11 85945108 85945234 -35898622 - ORR1E LTR MaLR -223 136 1 8 1240 23 0 0 0 chr11 85945242 85945265 -35898591 + AT_rich Low_complexity Low_complexity 1 23 0 8 1240 710 279 26 5 chr11 85946780 85946971 -35896885 - B3A SINE B2 -1 197 3 8 1240 651 304 50 52 chr11 85947229 85947589 -35896267 + MLT1B LTR MaLR 28 467 0 8 1240 536 221 10 0 chr11 85947674 85947778 -35896078 + B3 SINE B2 112 216 0 8 1240 622 179 90 0 chr11 85947935 85948069 -35895787 + B1_Mur3 SINE Alu 4 149 0 8 1240 233 325 35 18 chr11 85948072 85948241 -35895615 + L1M4c LINE L1 2329 2500 -3884 8 1240 253 324 0 66 chr11 85948254 85948330 -35895526 + ID4 SINE ID 9 79 -4 8 1240 390 193 146 11 chr11 85949164 85949253 -35894603 + B3 SINE B2 105 205 -11 8 1240 1839 249 53 6 chr11 85949272 85949781 -35894075 + MT2A LTR ERVL 1 533 0 8 1240 750 275 53 23 chr11 85949801 85950262 -35893594 + MERVL_2A-int LTR ERVL 14 554 -5207 8 1240 22 0 0 0 chr11 85950471 85950493 -35893363 + AT_rich Low_complexity Low_complexity 1 22 0 8 1240 727 246 69 32 chr11 85950495 85950684 -35893172 - B3A SINE B2 0 198 3 9 1240 238 200 80 50 chr11 85950740 85950840 -35893016 + L1MB2 LINE L1 5767 5869 -311 9 1240 303 211 74 0 chr11 85950927 85951022 -35892834 + L1MB2 LINE L1 6040 6141 -30 9 1240 239 0 0 31 chr11 85951036 85951068 -35892788 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1240 1167 36 0 0 chr11 85951068 85951207 -35892649 - B1_Mus1 SINE Alu -9 139 1 9 1240 282 120 20 0 chr11 85951207 85951257 -35892599 - B2_Mm1t SINE B2 -17 176 126 9 1240 436 302 54 61 chr11 85951328 85951476 -35892380 + ID_B1 SINE B4 77 223 -1 9 1240 588 268 35 136 chr11 85951485 85951684 -35892172 + B3A SINE B2 12 190 -5 9 1240 236 211 0 40 chr11 85951687 85951709 -35892147 + A-rich Low_complexity Low_complexity 1 21 0 9 1240 1041 77 21 0 chr11 85951709 85951852 -35892004 + B1_Mm SINE Alu 2 147 0 9 1240 236 211 0 40 chr11 85951852 85951903 -35891953 + A-rich Low_complexity Low_complexity 22 71 0 9 1240 465 289 54 113 chr11 85953131 85953299 -35890557 - RSINE1 SINE B4 -2 163 6 9 1240 249 276 45 62 chr11 85953621 85953733 -35890123 + PB1D7 SINE Alu 11 120 0 9 1240 323 291 97 21 chr11 85953763 85953907 -35889949 + L1M5 LINE L1 5175 5329 -817 9 1240 1306 115 16 0 chr11 85953910 85954102 -35889754 + B2_Mm2 SINE B2 1 195 0 9 1240 952 287 58 38 chr11 85954102 85954675 -35889181 + L1MB3 LINE L1 5320 5903 -280 9 1240 3291 29 0 0 chr11 85954842 85955226 -35888630 - L1Md_T LINE L1 0 6582 6199 9 1240 622 226 7 28 chr11 85955252 85955393 -35888463 + ID_B1 SINE B4 87 224 0 9 1240 752 113 0 0 chr11 85955401 85955507 -35888349 + B2_Mm2 SINE B2 2 107 -88 9 1240 192 77 0 0 chr11 85955806 85955832 -35888024 + (CATA)n Simple_repeat Simple_repeat 2 27 0 9 1240 912 66 0 32 chr11 85955922 85956078 -35887778 + RMER17B LTR ERVK 311 461 -497 9 1240 472 297 18 77 chr11 85956120 85956288 -35887568 - RSINE1 SINE B4 -3 162 5 9 1240 3147 51 2 8 chr11 85956288 85956686 -35887170 + MTA_Mm LTR MaLR 1 396 0 9 1240 264 30 0 0 chr11 85956705 85956738 -35887118 + (CAA)n Simple_repeat Simple_repeat 3 35 0 9 1240 615 180 164 0 chr11 85957435 85957563 -35886293 + B1_Mur3 SINE Alu 1 149 0 9 1240 712 207 28 14 chr11 85957924 85958089 -35885767 + B3A SINE B2 49 210 -6 9 1240 1668 177 114 15 chr11 85958145 85958547 -35885309 + Lx9 LINE L1 6961 7402 -242 9 1240 709 249 75 39 chr11 85958598 85958899 -35884957 + L1MC2 LINE L1 5845 6159 -174 9 1240 2046 172 54 32 chr11 85958908 85959317 -35884539 - RMER13B LTR ERVK -490 418 1 9 1240 26 50 0 0 chr11 85959429 85959469 -35884387 + AT_rich Low_complexity Low_complexity 1 40 0 9 1240 232 348 144 32 chr11 85960350 85960537 -35883319 - L2b LINE L2 -218 3157 2950 9 1240 930 72 156 7 chr11 85960648 85960790 -35883066 + B2_Mm2 SINE B2 1 165 -28 9 1240 180 0 0 0 chr11 85960790 85960810 -35883046 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 9 1240 804 138 161 12 chr11 85960810 85960835 -35883021 + B2_Mm1a SINE B2 166 193 0 9 1240 422 246 51 96 chr11 85960873 85961030 -35882826 + B4A SINE B4 75 224 -68 9 1240 1033 67 8 0 chr11 85960898 85961032 -35882824 + B1_Mm SINE Alu 13 147 0 9 1240 206 362 77 32 chr11 85961179 85961427 -35882429 - L2b LINE L2 -823 2596 2338 9 1240 1297 20 0 0 chr11 85961642 85961790 -35882066 + B1_Mus1 SINE Alu 1 148 0 9 1240 207 0 0 0 chr11 85962344 85962367 -35881489 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1240 227 250 0 62 chr11 85963054 85963135 -35880721 + (CAGGG)n Simple_repeat Simple_repeat 5 80 0 9 1240 2826 115 32 59 chr11 85963322 85963733 -35880123 + Lx4A LINE L1 5595 6013 -1045 9 1240 1068 131 16 37 chr11 85963733 85963924 -35879932 + B2_Mm2 SINE B2 1 187 -8 9 1240 2826 115 32 59 chr11 85963924 85964037 -35879819 + Lx4A LINE L1 6014 6105 -953 9 1240 4403 111 17 9 chr11 85964038 85964684 -35879172 + Lx4A LINE L1 6406 7056 -2 9 1240 878 220 33 23 chr11 85964750 85964964 -35878892 + B3 SINE B2 1 216 0 9 1240 879 230 4 65 chr11 85965015 85965247 -35878609 + ID_B1 SINE B4 5 222 -2 9 1240 900 128 13 79 chr11 85965517 85965669 -35878187 + B1_Mur4 SINE Alu 2 143 -7 9 1240 279 0 0 0 chr11 85965670 85965701 -35878155 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1240 602 291 63 11 chr11 85965750 85965941 -35877915 + MER20 DNA MER1_type 16 216 -3 9 1240 388 212 93 12 chr11 85966475 85966561 -35877295 - PB1 SINE Alu -14 113 21 9 1240 788 191 0 0 chr11 85966740 85966876 -35876980 + B1_Mur4 SINE Alu 2 137 -13 9 1240 297 51 0 0 chr11 85966877 85966916 -35876940 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1240 220 224 0 20 chr11 85966974 85967024 -35876832 + GA-rich Low_complexity Low_complexity 1 49 0 9 1240 378 250 0 13 chr11 85967257 85967334 -35876522 - ID4_ SINE ID -2 81 6 9 1240 721 270 46 26 chr11 85967494 85967688 -35876168 + B3A SINE B2 1 198 0 9 1240 1321 86 16 26 chr11 85967933 85968125 -35875731 + B2_Mm2 SINE B2 1 190 -5 9 1240 275 275 24 142 chr11 85968272 85968399 -35875457 + MT2B LTR ERVL 152 263 -338 9 1240 743 138 43 8 chr11 85968314 85968431 -35875425 + B1_Mur1 SINE Alu 21 141 -8 9 1240 433 289 21 0 chr11 85968770 85968867 -35874989 - PB1D10 SINE Alu -16 101 3 9 1240 894 230 78 0 chr11 85968892 85969083 -35874773 - B3 SINE B2 -7 209 4 9 1240 308 239 129 26 chr11 85975007 85975123 -35868733 + ID_B1 SINE B4 88 215 -9 9 1240 405 90 0 0 chr11 85975143 85975210 -35868646 + (TC)n Simple_repeat Simple_repeat 1 67 0 9 1240 246 32 0 0 chr11 85975213 85975244 -35868612 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1240 228 265 0 0 chr11 85976114 85976163 -35867693 - Cheshire DNA MER1_type -7 2413 2365 9 1240 438 287 49 8 chr11 85976240 85976363 -35867493 - B1F SINE Alu 0 149 22 9 1240 1022 215 30 0 chr11 85976409 85976609 -35867247 - B3 SINE B2 -10 206 1 9 1240 251 291 123 25 chr11 85976731 85976812 -35867044 + PB1 SINE Alu 23 111 -16 9 1240 218 32 0 31 chr11 85976891 85976923 -35866933 + (CAG)n Simple_repeat Simple_repeat 2 32 0 9 1240 657 111 0 0 chr11 85977182 85977272 -35866584 + B1_Mus2 SINE Alu 29 118 -29 9 1240 263 28 28 0 chr11 85977282 85977318 -35866538 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 9 1240 704 222 35 60 chr11 85977482 85977683 -35866173 + B3A SINE B2 1 196 -2 9 1240 1136 75 14 0 chr11 85977690 85977836 -35866020 + B1_Mus1 SINE Alu 1 148 0 9 1240 26 30 0 0 chr11 85977836 85977869 -35865987 + AT_rich Low_complexity Low_complexity 1 33 0 9 1240 642 181 90 8 chr11 85977957 85978091 -35865765 - B1F SINE Alu 0 149 5 9 1240 806 170 13 13 chr11 85978314 85978463 -35865393 - B1_Mur4 SINE Alu 0 150 2 9 1240 353 239 14 14 chr11 85978546 85978618 -35865238 + ID4_ SINE ID 2 73 -10 9 1240 352 246 0 0 chr11 85978617 85978686 -35865170 + ID_B1 SINE B4 97 165 -59 9 1240 180 97 0 0 chr11 85978713 85978744 -35865112 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1240 644 239 0 14 chr11 85978744 85978888 -35864968 - B1_Mus1 SINE Alu -5 143 2 9 1240 1192 41 0 26 chr11 85979088 85979239 -35864617 + B1_Mus2 SINE Alu 1 147 0 9 1240 234 0 0 0 chr11 85979239 85979265 -35864591 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1240 949 187 27 5 chr11 85979515 85979735 -35864121 + Lx4B LINE L1 6103 6327 -731 9 1240 1820 199 18 3 chr11 85979738 85980121 -35863735 + Lx2B LINE L1 6475 6863 -137 9 1240 240 200 0 0 chr11 85980145 85980195 -35863661 + A-rich Low_complexity Low_complexity 1 50 0 9 1240 629 243 83 17 chr11 85980221 85980401 -35863455 - B3A SINE B2 -4 194 3 9 1240 345 272 37 0 chr11 85981608 85981689 -35862167 + PB1D10 SINE Alu 13 96 -21 9 1240 328 290 46 9 chr11 85981702 85981810 -35862046 + PB1D10 SINE Alu 1 112 -5 9 1240 747 156 8 24 chr11 85981954 85982079 -35861777 + B3 SINE B2 8 130 -86 9 1240 42 20 0 0 chr11 85982098 85982147 -35861709 + AT_rich Low_complexity Low_complexity 1 49 0 9 1240 540 167 278 0 chr11 85982159 85982267 -35861589 + B1_Mur2 SINE Alu 3 140 -9 9 1240 686 237 105 5 chr11 85982346 85982537 -35861319 + B3 SINE B2 1 210 -6 9 1240 740 175 14 42 chr11 85982542 85982685 -35861171 + B1_Mur1 SINE Alu 1 139 -10 9 1240 466 260 39 39 chr11 85982750 85982878 -35860978 + B1F SINE Alu 17 144 -5 9 1240 1180 29 0 7 chr11 85982925 85983065 -35860791 + B1_Mm SINE Alu 1 139 -8 9 1241 791 242 47 0 chr11 85983420 85983610 -35860246 - B3 SINE B2 -10 206 8 9 1241 712 255 192 4 chr11 85983751 85983991 -35859865 + B4 SINE B4 2 286 -6 9 1241 310 302 57 40 chr11 85984104 85984228 -35859628 + MER3 DNA MER1_type 10 135 -74 9 1241 315 237 237 45 chr11 85985611 85985788 -35858068 + B3 SINE B2 2 212 -4 9 1241 319 200 0 18 chr11 85985834 85985890 -35857966 + B1_Mur4 SINE Alu 12 66 -84 9 1241 344 322 78 47 chr11 85986166 85986358 -35857498 + HAL1 LINE L1 2291 2488 -19 9 1241 282 273 0 0 chr11 85986522 85986599 -35857257 + B3 SINE B2 135 211 -5 9 1241 270 0 0 0 chr11 85986603 85986633 -35857223 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1241 521 244 93 16 chr11 85986718 85986847 -35857009 - B1F SINE Alu 0 149 11 9 1241 228 219 66 40 chr11 85986795 85986868 -35856988 + YREP_Mm Unknown Unknown 255 329 -1483 9 1241 302 172 203 0 chr11 85986868 85986932 -35856924 + B1_Mus1 SINE Alu 2 78 -70 9 1241 183 344 111 30 chr11 85987025 85987160 -35856696 - L2b LINE L2 0 3375 3230 1 1241 193 303 115 35 chr11 85987352 85987465 -35856391 + MIR SINE MIR 53 174 -88 1 1241 28 0 0 0 chr11 85987682 85987710 -35856146 + AT_rich Low_complexity Low_complexity 1 28 0 1 1241 443 241 55 9 chr11 85988244 85988353 -35855503 + ID_B1 SINE B4 80 193 -31 1 1241 656 56 26 117 chr11 85988355 85988707 -35855149 + GA-rich Low_complexity Low_complexity 1 320 0 1 1241 755 270 40 5 chr11 85988720 85988921 -35854935 + B3 SINE B2 2 209 -7 1 1241 736 211 76 112 chr11 85988997 85989164 -35854692 + B3A SINE B2 2 161 -34 1 1241 405 95 0 0 chr11 85989164 85989227 -35854629 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1 1241 517 211 76 112 chr11 85989227 85989256 -35854600 + B2_Mm2 SINE B2 162 191 -4 1 1241 427 175 12 0 chr11 85989387 85989467 -35854389 + RLTR40 LTR ERVK 463 543 -274 1 1241 478 211 128 38 chr11 85989470 85989603 -35854253 + ID_B1 SINE B4 51 195 -29 1 1241 395 286 202 12 chr11 85989741 85989904 -35853952 + B3A SINE B2 2 195 -3 1 1241 491 299 13 46 chr11 85989923 85990074 -35853782 + RSINE1 SINE B4 3 148 -17 1 1241 972 254 5 0 chr11 85990241 85990450 -35853406 + B3 SINE B2 2 211 -5 1 1241 27 29 0 0 chr11 85990469 85990503 -35853353 + AT_rich Low_complexity Low_complexity 1 34 0 1 1241 36778 8 0 6 chr11 85990961 85995426 -35848430 + L1Md_A LINE L1 1 4084 -1799 1 1241 1688 21 0 0 chr11 85995426 85995619 -35848237 - B2_Mm1t SINE B2 0 193 1 1 1241 36778 3 0 7 chr11 85995619 85997136 -35846720 + L1Md_A LINE L1 4085 5586 -297 1 1241 9051 1 1 0 chr11 85997136 85998131 -35845725 + L1Md_A LINE L1 5587 6582 0 1 1241 928 209 97 0 chr11 85998158 85998354 -35845502 + B3 SINE B2 2 216 0 1 1241 629 167 333 0 chr11 85999267 85999429 -35844427 + B3 SINE B2 1 216 0 1 1241 270 242 61 0 chr11 85999726 85999792 -35844064 + B1F SINE Alu 49 118 -31 1 1241 769 200 0 8 chr11 85999844 85999975 -35843881 + B3 SINE B2 6 135 -81 1 1241 315 0 0 0 chr11 86000161 86000196 -35843660 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1241 205 311 77 77 chr11 86000215 86000358 -35843498 - MIR3 SINE MIR -21 187 45 2 1241 1233 51 0 0 chr11 86000793 86000930 -35842926 + B1_Mm SINE Alu 2 138 -9 3 1241 194 0 39 0 chr11 86000930 86000956 -35842900 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1241 337 333 114 26 chr11 86001495 86001609 -35842247 + PB1 SINE Alu 1 124 -3 5 1241 223 154 28 97 chr11 86001742 86001814 -35842042 + ID4_ SINE ID 15 81 -2 6 1241 1722 126 82 0 chr11 86001913 86002183 -35841673 + Lx2 LINE L1 6706 6997 0 7 1241 754 220 157 16 chr11 86002242 86002397 -35841459 + B3 SINE B2 1 167 -49 8 1241 186 43 0 0 chr11 86002397 86002420 -35841436 + (CATA)n Simple_repeat Simple_repeat 4 26 0 9 1241 754 220 157 16 chr11 86002420 86002449 -35841407 + B3 SINE B2 168 209 -7 8 1241 287 212 76 0 chr11 86002489 86002555 -35841301 + U6 snRNA snRNA 8 78 -29 1 1241 1290 48 0 0 chr11 86002822 86002969 -35840887 + B1_Mm SINE Alu 1 147 0 1 1241 23 33 0 0 chr11 86003362 86003392 -35840464 + AT_rich Low_complexity Low_complexity 1 30 0 1 1241 564 202 160 0 chr11 86003523 86003642 -35840214 - B1_Mur2 SINE Alu -10 139 2 1 1241 231 211 96 0 chr11 86003813 86003865 -35839991 + ID SINE ID 6 62 -162 1 1241 425 290 40 10 chr11 86004740 86004841 -35839015 - B4 SINE B4 -78 214 111 1 1241 326 208 28 0 chr11 86004934 86005006 -35838850 - B3 SINE B2 -139 77 4 1 1241 401 267 12 0 chr11 86005006 86005090 -35838766 - B4A SINE B4 -193 99 15 1 1241 247 301 162 19 chr11 86005165 86005270 -35838586 - Tigger1 DNA MER2_type -2298 120 1 1 1241 360 254 155 10 chr11 86005309 86005644 -35838212 + L1ME3A LINE L1 5570 5960 -219 1 1241 647 204 53 26 chr11 86005886 86006037 -35837819 + RSINE1 SINE B4 11 165 0 1 1241 30 0 0 0 chr11 86006052 86006082 -35837774 + AT_rich Low_complexity Low_complexity 1 30 0 2 1241 363 252 9 46 chr11 86006083 86006191 -35837665 + B3 SINE B2 107 210 -6 2 1241 1181 63 7 0 chr11 86006785 86006928 -35836928 - B1_Mus2 SINE Alu 0 147 4 2 1241 802 203 0 14 chr11 86007112 86007257 -35836599 - B1_Mur2 SINE Alu -6 143 1 2 1241 859 154 21 7 chr11 86007291 86007435 -35836421 + B1_Mus1 SINE Alu 1 146 -2 2 1241 21 0 0 0 chr11 86007547 86007568 -35836288 + AT_rich Low_complexity Low_complexity 1 21 0 2 1241 589 252 88 0 chr11 86007592 86007739 -35836117 + B3 SINE B2 57 216 0 2 1241 666 164 0 16 chr11 86007825 86007949 -35835907 + Lx4A LINE L1 6933 7054 -4 2 1241 454 311 0 0 chr11 86007978 86008081 -35835775 + PB1D10 SINE Alu 4 106 -11 2 1241 365 196 245 0 chr11 86008393 86008495 -35835361 - RSINE1 SINE B4 -37 128 2 2 1241 675 288 18 24 chr11 86008550 86008714 -35835142 - RSINE1 SINE B4 0 165 3 3 1241 2984 102 81 23 chr11 86008759 86009230 -35834626 - MT2B LTR ERVL -98 503 6 3 1241 281 220 105 44 chr11 86009144 86009258 -35834598 - ORR1A3-int LTR MaLR -1257 706 586 3 1241 546 291 88 0 chr11 86009355 86009537 -35834319 + B3A SINE B2 1 198 0 3 1241 295 324 0 0 chr11 86009825 86009899 -35833957 - ID4_ SINE ID 0 83 10 3 1241 340 258 38 47 chr11 86009946 86010052 -35833804 - PB1D10 SINE Alu 0 117 13 3 1241 248 128 26 0 chr11 86010065 86010104 -35833752 - PB1D9 SINE Alu -1 119 80 3 1241 368 254 129 11 chr11 86010194 86010301 -35833555 - PB1D10 SINE Alu -16 133 7 3 1241 2429 114 6 0 chr11 86010314 86010639 -35833217 + ORR1A2 LTR MaLR 1 327 0 3 1241 23 0 0 0 chr11 86010842 86010865 -35832991 + AT_rich Low_complexity Low_complexity 1 23 0 3 1241 626 242 16 16 chr11 86010951 86011073 -35832783 - B1F2 SINE Alu -26 123 2 4 1241 402 238 71 0 chr11 86011243 86011327 -35832529 + RSINE1 SINE B4 76 165 0 4 1241 30 27 0 0 chr11 86011328 86011365 -35832491 + AT_rich Low_complexity Low_complexity 1 37 0 4 1241 1178 186 10 10 chr11 86011780 86011986 -35831870 + B3 SINE B2 4 209 -7 4 1241 509 248 14 62 chr11 86012532 86012678 -35831178 + B3A SINE B2 56 194 -4 4 1241 293 347 73 28 chr11 86012832 86013010 -35830846 + MIR SINE MIR 16 201 -61 4 1241 463 271 59 44 chr11 86013367 86013502 -35830354 - RSINE1 SINE B4 -18 147 11 4 1241 413 210 85 46 chr11 86014126 86014256 -35829600 + B1_Mur1 SINE Alu 3 137 -12 4 1241 3894 309 74 54 chr11 86015387 86015851 -35828005 + RLTR6-int LTR ERV1 514 955 -6601 4 1241 495 0 0 0 chr11 86015851 86015906 -35827950 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1241 5913 316 59 62 chr11 86015906 86016925 -35826931 + RLTR6-int LTR ERV1 956 2107 -5671 4 1241 1245 61 0 0 chr11 86016925 86017072 -35826784 + B1_Mus2 SINE Alu 1 147 0 5 1241 5913 314 57 63 chr11 86017072 86020701 -35823155 + RLTR6-int LTR ERV1 2108 5710 -2068 4 1241 4666 99 15 12 chr11 86020848 86021520 -35822336 + RLTR6-int LTR ERV1 5633 6306 -1250 4 1241 322 272 94 14 chr11 86021670 86021808 -35822048 + RLTR6-int LTR ERV1 6701 6849 -929 4 1241 1020 282 51 47 chr11 86021905 86022378 -35821478 + RNERVK23-int LTR ERVK 7280 7754 -463 5 1241 1110 307 20 16 chr11 86021982 86022422 -35821434 + RLTR6-int LTR ERV1 7276 7717 -61 4 1241 1572 46 0 0 chr11 86022433 86022607 -35821249 + B2_Mm1t SINE B2 1 174 -19 5 1241 589 225 161 21 chr11 86022882 86023108 -35820748 + RLTR41 LTR ERV1 251 467 -65 5 1241 596 217 8 8 chr11 86023938 86024059 -35819797 + B3 SINE B2 1 121 -95 5 1241 673 156 53 30 chr11 86025450 86025582 -35818274 - B1_Mur2 SINE Alu -14 135 1 5 1241 21 0 0 0 chr11 86025589 86025610 -35818246 + AT_rich Low_complexity Low_complexity 1 21 0 5 1241 991 34 0 0 chr11 86026692 86026811 -35817045 - L1_Mus1 LINE L1 -2 6565 6447 5 1241 232 305 219 0 chr11 86026895 86027000 -35816856 - MIRb SINE MIR -28 240 113 5 1241 550 209 17 42 chr11 86027017 86027137 -35816719 + PB1D9 SINE Alu 2 118 -2 5 1241 226 284 26 39 chr11 86027209 86027286 -35816570 - MIR SINE MIR -78 130 55 5 1241 649 97 142 0 chr11 86027545 86027658 -35816198 - B1_Mus2 SINE Alu 0 147 19 6 1241 342 0 0 0 chr11 86027661 86027699 -35816157 + (CCA)n Simple_repeat Simple_repeat 2 39 0 6 1241 34 79 0 0 chr11 86027783 86027859 -35815997 + AT_rich Low_complexity Low_complexity 1 76 0 6 1241 1140 44 29 7 chr11 86028016 86028152 -35815704 + B1_Mus1 SINE Alu 2 140 -8 6 1241 806 207 29 0 chr11 86028193 86028333 -35815523 + B1_Mur3 SINE Alu 1 144 -5 6 1241 864 221 78 25 chr11 86029530 86029734 -35814122 + B3 SINE B2 1 215 -1 6 1241 1040 149 0 7 chr11 86029740 86029889 -35813967 + B1_Mus1 SINE Alu 1 148 0 6 1241 2061 195 90 53 chr11 86030022 86030067 -35813789 + RLTR12A LTR ERVK 1 39 -529 6 1241 1247 62 0 7 chr11 86030067 86030214 -35813642 + B1_Mm SINE Alu 1 146 -1 6 1241 2061 195 90 53 chr11 86030214 86030699 -35813157 + RLTR12A LTR ERVK 40 551 -17 6 1241 235 321 51 13 chr11 86030949 86031028 -35812828 + L2b LINE L2 3289 3370 -5 6 1241 373 104 0 5 chr11 86032152 86032212 -35811644 - B1F1 SINE Alu -61 59 2 7 1241 24 32 0 0 chr11 86032250 86032281 -35811575 + AT_rich Low_complexity Low_complexity 1 31 0 7 1241 1270 54 0 0 chr11 86032482 86032629 -35811227 + B1_Mus1 SINE Alu 2 148 0 7 1241 817 103 35 0 chr11 86033060 86033176 -35810680 - PB1D9 SINE Alu 0 120 1 7 1241 485 286 75 81 chr11 86033332 86033492 -35810364 + RSINE1 SINE B4 7 165 0 7 1241 394 255 108 32 chr11 86033709 86033867 -35809989 - B4A SINE B4 -56 236 67 7 1241 475 267 67 0 chr11 86034012 86034147 -35809709 + B1F2 SINE Alu 5 148 -1 7 1241 377 279 12 0 chr11 86034323 86034409 -35809447 - RSINE1 SINE B4 -76 89 3 7 1241 317 312 77 14 chr11 86034422 86034445 -35809411 - B1F SINE Alu -1 148 65 7 1241 425 299 9 9 chr11 86034445 86034553 -35809303 - ID_B1 SINE B4 -28 196 89 7 1241 317 312 77 14 chr11 86034553 86034568 -35809288 - B1F SINE Alu -1 64 1 7 1241 537 172 11 21 chr11 86034568 86034663 -35809193 + B1_Mur2 SINE Alu 55 148 -1 8 1241 437 279 0 19 chr11 86035003 86035109 -35808747 + PB1D10 SINE Alu 14 117 0 8 1241 1789 21 0 0 chr11 86035330 86035522 -35808334 + B2_Mm1a SINE B2 2 193 0 8 1241 656 259 6 19 chr11 86035904 86036057 -35807799 - ID_B1 SINE B4 -1 223 73 8 1241 698 292 36 0 chr11 86036057 86036225 -35807631 + B3A SINE B2 4 177 -21 8 1241 28 0 0 0 chr11 86036292 86036320 -35807536 + AT_rich Low_complexity Low_complexity 1 28 0 8 1241 524 86 67 0 chr11 86036383 86036473 -35807383 + B1_Mm SINE Alu 1 147 0 8 1241 189 0 0 0 chr11 86036473 86036494 -35807362 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1241 382 296 219 46 chr11 86036494 86036841 -35807015 + HAL1 LINE L1 1371 1777 -730 8 1241 210 304 18 0 chr11 86037108 86037164 -35806692 + ID4 SINE ID 12 68 -15 8 1241 280 241 121 65 chr11 86037195 86037319 -35806537 + HAL1 LINE L1 2075 2205 -302 8 1241 1110 95 0 26 chr11 86037561 86037712 -35806144 + B1_Mus1 SINE Alu 2 148 0 9 1241 245 303 72 18 chr11 86037926 86038037 -35805819 - MER5B DNA MER1_type -59 119 3 9 1241 241 267 84 56 chr11 86038174 86038281 -35805575 - PB1D9 SINE Alu -6 114 5 9 1241 467 264 82 41 chr11 86038821 86038967 -35804889 + RSINE1 SINE B4 13 164 -1 9 1241 218 284 43 52 chr11 86039548 86039663 -35804193 + BC1_Mm scRNA scRNA 2 115 -37 9 1241 298 293 30 97 chr11 86040584 86040709 -35803147 + PB1 SINE Alu 1 144 -5 9 1241 27 29 0 0 chr11 86040782 86040816 -35803040 + AT_rich Low_complexity Low_complexity 1 34 0 9 1241 1138 109 0 0 chr11 86040884 86041031 -35802825 + B1_Mus1 SINE Alu 2 148 0 9 1241 214 364 30 0 chr11 86041693 86041759 -35802097 + ID4_ SINE ID 2 69 -14 9 1241 420 318 169 22 chr11 86041868 86042093 -35801763 + Tigger5 DNA MER2_type 6 263 -2143 9 1241 195 42 0 0 chr11 86042119 86042143 -35801713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1241 583 156 248 0 chr11 86042144 86042253 -35801603 - B1_Mur2 SINE Alu -12 137 2 1 1241 422 181 28 0 chr11 86042369 86042441 -35801415 - ID4_ SINE ID -6 77 4 1 1241 953 181 203 0 chr11 86043162 86043339 -35800517 + B3 SINE B2 2 214 -2 1 1241 325 189 57 207 chr11 86043629 86043769 -35800087 + PB1D7 SINE Alu 2 120 0 1 1241 22 80 0 0 chr11 86043986 86044036 -35799820 + AT_rich Low_complexity Low_complexity 1 50 0 1 1241 263 275 48 121 chr11 86044571 86044608 -35799248 + B3A SINE B2 70 103 -95 1 1241 1427 105 11 0 chr11 86044608 86044799 -35799057 - B2_Mm1t SINE B2 0 193 1 1 1241 263 275 48 121 chr11 86044799 86044885 -35798971 + B3A SINE B2 104 184 -14 1 1241 231 309 133 47 chr11 86044895 86045217 -35798639 + L2 LINE L2 1817 2166 -1253 1 1241 417 290 9 0 chr11 86046131 86046238 -35797618 + PB1D10 SINE Alu 2 109 -8 1 1241 274 176 42 0 chr11 86046239 86046358 -35797498 + (TA)n Simple_repeat Simple_repeat 1 124 0 1 1241 25 0 0 0 chr11 86046397 86046422 -35797434 + AT_rich Low_complexity Low_complexity 1 25 0 1 1241 243 352 37 19 chr11 86047477 86047584 -35796272 + B1_Mur1 SINE Alu 2 110 -39 1 1241 455 72 28 28 chr11 86047699 86047770 -35796086 - B3 SINE B2 -144 72 2 1 1241 293 109 146 0 chr11 86047961 86048016 -35795840 - B3 SINE B2 -86 130 68 1 1241 498 33 0 0 chr11 86048017 86048077 -35795779 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1241 502 263 76 0 chr11 86048456 86048574 -35795282 - ID_B1 SINE B4 -3 221 95 1 1241 245 254 139 14 chr11 86048684 86048756 -35795100 + ID4_ SINE ID 3 83 0 1 1241 232 282 28 14 chr11 86048851 86048923 -35794933 + tRNA-Ala-GCY_ tRNA tRNA 3 75 0 1 1241 293 223 170 60 chr11 86049135 86049235 -35794621 + B1F1 SINE Alu 31 141 -8 1 1241 189 0 0 0 chr11 86049547 86049568 -35794288 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1241 588 29 0 0 chr11 86049570 86049640 -35794216 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 1 1241 399 261 0 0 chr11 86050317 86050405 -35793451 + PB1 SINE Alu 37 124 -3 1 1241 290 313 42 25 chr11 86050716 86050834 -35793022 + PB1D7 SINE Alu 1 120 0 1 1241 370 197 0 83 chr11 86050926 86050998 -35792858 + B1_Mur3 SINE Alu 2 67 -82 1 1241 295 272 24 24 chr11 86050927 86051010 -35792846 + ID_B1 SINE B4 84 166 -58 1 1241 280 237 104 19 chr11 86051442 86051548 -35792308 + B3A SINE B2 104 216 0 1 1241 1505 73 11 0 chr11 86052111 86052302 -35791554 - B2_Mm1t SINE B2 0 193 1 1 1241 798 201 169 0 chr11 86052329 86052513 -35791343 - B3 SINE B2 0 216 2 1 1241 450 240 20 14 chr11 86052842 86052949 -35790907 + PB1D9 SINE Alu 40 150 0 1 1241 740 235 12 56 chr11 86053216 86053378 -35790478 - RSINE1 SINE B4 -8 157 3 1 1241 408 307 75 62 chr11 86053893 86054053 -35789803 + RSINE1 SINE B4 4 165 0 1 1241 242 196 39 0 chr11 86054627 86054678 -35789178 + HAL1 LINE L1 1298 1350 -1157 1 1241 310 217 157 0 chr11 86054740 86054823 -35789033 + PB1D7 SINE Alu 24 119 -1 1 1241 1179 95 0 0 chr11 86054839 86054987 -35788869 + B1_Mus1 SINE Alu 1 148 0 1 1241 543 274 81 51 chr11 86054995 86055291 -35788565 + HAL1 LINE L1 1387 1691 -816 1 1241 276 310 45 30 chr11 86055317 86055450 -35788406 + HAL1 LINE L1 1833 1967 -540 1 1241 574 274 0 0 chr11 86055498 86055615 -35788241 - PB1D7 SINE Alu -2 118 2 1 1241 600 248 46 0 chr11 86055684 86055793 -35788063 + RSINE1 SINE B4 37 150 -15 1 1241 423 38 0 0 chr11 86055797 86055850 -35788006 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1241 198 132 57 0 chr11 86055864 86055917 -35787939 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 1 1241 1214 62 7 0 chr11 86055926 86056072 -35787784 + B1_Mm SINE Alu 1 147 0 1 1241 180 0 0 0 chr11 86056683 86056703 -35787153 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1241 1277 102 0 6 chr11 86056906 86057084 -35786772 - B2_Mm2 SINE B2 -17 178 2 1 1241 711 311 81 21 chr11 86057129 86057461 -35786395 - Tigger6a DNA MER2_type -692 391 40 1 1241 424 242 68 8 chr11 86058382 86058515 -35785341 + B1F2 SINE Alu 2 142 -7 1 1241 411 102 42 56 chr11 86058533 86058612 -35785244 + B3 SINE B2 11 88 -107 1 1241 256 265 90 41 chr11 86058637 86058759 -35785097 + MIRb SINE MIR 29 156 -112 1 1241 864 132 0 77 chr11 86059380 86059536 -35784320 + B1_Mur4 SINE Alu 1 144 -6 1 1241 245 169 17 0 chr11 86059536 86059595 -35784261 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 1 1241 257 151 19 0 chr11 86059752 86059805 -35784051 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1241 243 324 78 10 chr11 86059828 86059931 -35783925 + ID_B1 SINE B4 99 208 -16 1 1241 234 250 61 30 chr11 86059888 86059954 -35783902 + ID4_ SINE ID 13 80 -3 1 1241 376 158 21 0 chr11 86060007 86060102 -35783754 + L1MB4 LINE L1 5745 5843 -454 1 1241 216 340 9 57 chr11 86060132 86060238 -35783618 - PB1D9 SINE Alu -19 101 1 1 1241 318 204 155 0 chr11 86060238 86060341 -35783515 + L1MB4 LINE L1 5820 5938 -242 1 1241 261 0 0 0 chr11 86060567 86060596 -35783260 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1241 690 331 50 71 chr11 86060614 86060682 -35783174 - B4A SINE B4 -14 278 208 1 1241 656 286 32 5 chr11 86060682 86060872 -35782984 - B3A SINE B2 0 198 4 1 1241 690 331 50 71 chr11 86060872 86061086 -35782770 - B4A SINE B4 -85 207 2 1 1241 1231 29 0 0 chr11 86061187 86061327 -35782529 + B1_Mus1 SINE Alu 3 142 -6 1 1241 269 292 326 0 chr11 86061357 86061605 -35782251 + Charlie1b DNA MER1_type 6 334 -189 1 1241 280 297 56 56 chr11 86061605 86061712 -35782144 + PB1D10 SINE Alu 3 109 -8 1 1241 345 47 0 0 chr11 86061716 86061759 -35782097 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1241 456 67 0 0 chr11 86061759 86061819 -35782037 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1241 238 223 122 16 chr11 86061821 86061944 -35781912 + Charlie1b DNA MER1_type 335 470 -53 1 1241 730 191 13 33 chr11 86062013 86062165 -35781691 - B1_Mur1 SINE Alu 0 149 1 1 1241 300 288 14 0 chr11 86062189 86062262 -35781594 - B1F SINE Alu -73 76 3 1 1241 375 277 56 7 chr11 86063112 86063250 -35780606 + B1F2 SINE Alu 1 147 -2 1 1241 330 335 74 25 chr11 86063257 86063380 -35780476 + ID_B1 SINE B4 5 216 -8 1 1241 361 253 13 0 chr11 86063380 86063459 -35780397 + B1F SINE Alu 62 141 -8 1 1241 308 242 0 0 chr11 86063490 86063556 -35780300 + BC1_Mm scRNA scRNA 19 84 -68 1 1241 22 56 0 0 chr11 86063695 86063731 -35780125 + AT_rich Low_complexity Low_complexity 1 36 0 1 1241 289 321 101 0 chr11 86063831 86063940 -35779916 + PB1D7 SINE Alu 1 120 0 1 1241 22 94 0 0 chr11 86065252 86065316 -35778540 + GC_rich Low_complexity Low_complexity 1 64 0 1 1241 339 319 11 0 chr11 86065436 86065527 -35778329 - PB1D7 SINE Alu -6 114 23 1 1241 300 253 177 0 chr11 86065574 86065653 -35778203 + B3A SINE B2 36 128 -70 1 1241 403 270 13 133 chr11 86065958 86066116 -35777740 - B1_Mur1 SINE Alu -10 139 1 1 1241 369 256 27 55 chr11 86066234 86066346 -35777510 + PB1D10 SINE Alu 8 117 0 1 1241 1203 49 0 0 chr11 86066461 86066605 -35777251 + B1_Mus2 SINE Alu 4 147 0 1 1241 482 267 22 44 chr11 86066667 86066804 -35777052 + RSINE1 SINE B4 4 137 -28 1 1241 240 377 19 19 chr11 86066972 86067080 -35776776 + PB1D10 SINE Alu 1 108 -9 1 1241 405 0 0 0 chr11 86067328 86067373 -35776483 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1241 471 277 10 0 chr11 86067452 86067553 -35776303 - B3 SINE B2 -113 103 2 1 1241 221 327 122 43 chr11 86067587 86067702 -35776154 - B4A SINE B4 -118 174 51 1 1241 859 248 19 24 chr11 86067759 86067970 -35775886 + B3 SINE B2 1 210 -6 1 1241 877 40 186 0 chr11 86068045 86068169 -35775687 + B1_Mus1 SINE Alu 2 148 0 1 1241 557 186 195 0 chr11 86068178 86068296 -35775560 + B1_Mm SINE Alu 1 141 -6 1 1241 1282 64 0 34 chr11 86068383 86068402 -35775454 - B2_Mm1t SINE B2 -21 172 159 1 1241 231 61 0 0 chr11 86068402 86068435 -35775421 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 1241 1282 64 0 34 chr11 86068435 86068592 -35775264 - B2_Mm1t SINE B2 -35 158 2 1 1241 1196 43 0 0 chr11 86068656 86068797 -35775059 + B1_Mus2 SINE Alu 5 145 -2 1 1241 192 77 0 0 chr11 86068800 86068826 -35775030 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1241 192 179 0 0 chr11 86070921 86070960 -35772896 + A-rich Low_complexity Low_complexity 1 39 0 1 1241 1237 34 0 0 chr11 86071444 86071592 -35772264 + B1_Mus1 SINE Alu 1 148 0 1 1241 355 244 121 9 chr11 86071718 86071834 -35772022 - B1_Mur1 SINE Alu 0 149 21 1 1241 352 290 100 0 chr11 86072010 86072110 -35771746 - PB1D10 SINE Alu -7 110 1 1 1241 225 271 114 106 chr11 86072110 86072159 -35771697 - ID_B1 SINE B4 -133 91 42 1 1241 451 344 6 65 chr11 86072163 86072183 -35771673 - RSINE1 SINE B4 -6 159 140 1 1241 450 0 0 0 chr11 86072183 86072233 -35771623 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1241 451 344 6 65 chr11 86072233 86072380 -35771476 - RSINE1 SINE B4 -26 139 2 1 1241 1385 70 27 0 chr11 86072408 86072594 -35771262 + B2_Mm2 SINE B2 2 192 -3 1 1241 476 181 171 0 chr11 86072596 86072701 -35771155 + B3A SINE B2 38 160 -38 1 1241 270 0 0 0 chr11 86072734 86072764 -35771092 + (GCTTG)n Simple_repeat Simple_repeat 1 30 0 1 1241 869 134 28 7 chr11 86072778 86072921 -35770935 + B1_Mus1 SINE Alu 3 148 0 1 1241 691 216 168 0 chr11 86072937 86073122 -35770734 + B3 SINE B2 1 216 0 1 1241 297 0 0 0 chr11 86073188 86073221 -35770635 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1241 585 186 44 0 chr11 86073221 86073334 -35770522 - B1_Mur4 SINE Alu -32 118 1 2 1241 225 259 20 141 chr11 86073249 86073348 -35770508 - MT2B LTR ERVL -361 240 154 2 1241 314 344 54 0 chr11 86073763 86073856 -35770000 - PB1D10 SINE Alu -19 98 1 2 1241 332 347 24 8 chr11 86073918 86074043 -35769813 + B1_Mur3 SINE Alu 2 128 -21 2 1241 183 42 0 0 chr11 86074521 86074545 -35769311 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1241 923 102 36 0 chr11 86074576 86074713 -35769143 + B1_Mus1 SINE Alu 7 148 0 2 1241 288 272 189 7 chr11 86074987 86075135 -35768721 + MER104 DNA Tc2 4 178 -3 2 1241 390 128 79 11 chr11 86075310 86075422 -35768434 + Lx2 LINE L1 6554 6642 -355 2 1241 1320 131 9 31 chr11 86075422 86075651 -35768205 + Lx2 LINE L1 6774 6997 0 2 1241 628 41 0 0 chr11 86075669 86075742 -35768114 + tRNA-Gln-CAA tRNA tRNA 1 73 -2 2 1241 1190 79 90 0 chr11 86075754 86075932 -35767924 + B2_Mm2 SINE B2 2 195 0 2 1241 292 290 17 78 chr11 86077007 86077123 -35766733 + PB1D10 SINE Alu 1 109 -8 2 1241 254 244 90 0 chr11 86077256 86077334 -35766522 - PB1D10 SINE Alu 0 117 33 2 1241 315 204 139 30 chr11 86077363 86077464 -35766392 - PB1D10 SINE Alu -1 116 5 2 1241 1080 51 0 14 chr11 86077791 86077930 -35765926 - B1_Mus2 SINE Alu -10 137 1 2 1241 651 228 123 80 chr11 86078019 86078262 -35765594 + B4 SINE B4 3 269 -23 2 1241 192 77 0 0 chr11 86078262 86078288 -35765568 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1241 651 228 123 80 chr11 86078288 86078320 -35765536 + B4 SINE B4 270 290 -2 2 1241 681 137 64 8 chr11 86078555 86078680 -35765176 + B1_Mus1 SINE Alu 6 137 -11 2 1241 748 130 69 42 chr11 86078710 86078854 -35765002 + B1_Mur3 SINE Alu 2 149 0 2 1241 198 0 0 0 chr11 86078856 86078878 -35764978 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1241 265 257 39 91 chr11 86079704 86079781 -35764075 - ID SINE ID -146 78 6 2 1241 507 220 0 44 chr11 86080323 86080437 -35763419 + PB1D10 SINE Alu 1 109 -8 2 1241 236 170 19 0 chr11 86080971 86081024 -35762832 + GA-rich Low_complexity Low_complexity 2 55 0 2 1241 28 0 0 0 chr11 86081173 86081201 -35762655 + AT_rich Low_complexity Low_complexity 1 28 0 2 1241 200 200 0 0 chr11 86082051 86082086 -35761770 + A-rich Low_complexity Low_complexity 1 35 0 2 1241 201 74 0 0 chr11 86083184 86083211 -35760645 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1241 275 130 19 0 chr11 86083211 86083265 -35760591 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1241 261 0 0 0 chr11 86084693 86084722 -35759134 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1241 660 26 0 0 chr11 86084722 86084799 -35759057 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1241 333 304 0 0 chr11 86084863 86084932 -35758924 - PB1D7 SINE Alu -17 103 35 2 1241 205 191 0 21 chr11 86084955 86085003 -35758853 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1241 284 224 276 0 chr11 86085103 86085219 -35758637 + B1_Mur3 SINE Alu 1 148 -1 2 1241 230 202 182 45 chr11 86085241 86085329 -35758527 + B1_Mur2 SINE Alu 44 143 -6 2 1241 789 212 69 29 chr11 86085496 86085700 -35758156 + B3 SINE B2 1 212 -4 2 1241 217 263 17 17 chr11 86085746 86085804 -35758052 + BC1_Mm scRNA scRNA 8 65 -87 2 1241 25 31 0 0 chr11 86086449 86086481 -35757375 + AT_rich Low_complexity Low_complexity 1 32 0 2 1241 27 0 0 0 chr11 86086502 86086529 -35757327 + AT_rich Low_complexity Low_complexity 1 27 0 2 1241 23 33 0 0 chr11 86086993 86087023 -35756833 + AT_rich Low_complexity Low_complexity 1 30 0 2 1241 379 274 39 10 chr11 86088052 86088155 -35755701 - B1F2 SINE Alu -8 141 36 2 1241 748 214 0 7 chr11 86088193 86088334 -35755522 - B1_Mur1 SINE Alu -5 144 5 2 1241 21 0 0 0 chr11 86088677 86088698 -35755158 + AT_rich Low_complexity Low_complexity 1 21 0 2 1241 304 264 101 60 chr11 86089206 86089222 -35754634 + ID_B1 SINE B4 70 224 0 2 1241 306 308 75 23 chr11 86089222 86089355 -35754501 + B1F SINE Alu 10 149 0 2 1241 213 119 0 0 chr11 86090023 86090065 -35753791 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1241 186 143 0 0 chr11 86090243 86090278 -35753578 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 2 1241 370 284 62 35 chr11 86090563 86090676 -35753180 + B1F SINE Alu 2 117 -32 2 1241 609 186 26 0 chr11 86090688 86090801 -35753055 + PB1D9 SINE Alu 5 120 0 2 1241 237 319 75 21 chr11 86090890 86090983 -35752873 + MLT1D LTR MaLR 80 177 -328 2 1241 246 328 26 12 chr11 86090981 86091072 -35752784 - ID4_ SINE ID -64 88 2 2 1241 341 314 153 10 chr11 86091162 86091371 -35752485 + MLT1D LTR MaLR 252 490 -15 2 1241 894 151 7 0 chr11 86091484 86091630 -35752226 + B1_Mus1 SINE Alu 2 148 0 2 1241 393 22 0 0 chr11 86091632 86091678 -35752178 + (TTA)n Simple_repeat Simple_repeat 1 46 0 2 1241 231 231 119 30 chr11 86091866 86091933 -35751923 + B1_Mur1 SINE Alu 68 140 -9 2 1241 224 242 50 0 chr11 86092598 86092697 -35751159 + (TA)n Simple_repeat Simple_repeat 1 104 0 2 1241 459 0 0 0 chr11 86092716 86092767 -35751089 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1241 770 271 12 20 chr11 86092819 86093002 -35750854 - B3 SINE B2 -7 209 24 2 1241 397 299 87 43 chr11 86093624 86093785 -35750071 + B4 SINE B4 5 172 -120 2 1241 738 48 8 0 chr11 86094323 86094424 -35749432 + B1_Mm SINE Alu 43 147 0 2 1241 25 65 0 0 chr11 86094616 86094662 -35749194 + AT_rich Low_complexity Low_complexity 1 46 0 2 1241 567 322 47 0 chr11 86094662 86094811 -35749045 - RSINE1 SINE B4 -6 159 4 2 1241 1203 68 0 0 chr11 86094848 86094996 -35748860 - B1_Mus1 SINE Alu 0 148 1 2 1241 755 274 45 0 chr11 86095046 86095247 -35748609 - B3 SINE B2 -6 210 1 2 1241 895 163 14 7 chr11 86095405 86095553 -35748303 + B1_Mur3 SINE Alu 1 149 0 2 1241 22 0 0 0 chr11 86095560 86095582 -35748274 + AT_rich Low_complexity Low_complexity 1 22 0 2 1241 595 218 65 36 chr11 86095587 86095725 -35748131 + B1_Mur3 SINE Alu 3 144 -5 2 1241 188 67 0 32 chr11 86095867 86095898 -35747958 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 2 1241 283 270 56 0 chr11 86095971 86096051 -35747805 - B1_Mus1 SINE Alu -31 89 1 2 1241 287 306 20 30 chr11 86096183 86096284 -35747572 - B3A SINE B2 -84 114 15 2 1241 496 226 39 10 chr11 86096394 86096497 -35747359 - PB1D9 SINE Alu -1 119 14 2 1241 256 344 42 21 chr11 86096413 86096508 -35747348 - ID_B1 SINE B4 -48 176 80 2 1241 841 179 7 7 chr11 86097033 86097179 -35746677 - B1_Mus1 SINE Alu -1 147 2 2 1241 610 296 39 10 chr11 86097568 86097773 -35746083 - B3 SINE B2 -3 213 3 2 1241 270 81 0 0 chr11 86097799 86097836 -35746020 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1241 332 215 101 0 chr11 86098136 86098215 -35745641 - B1F SINE Alu -21 128 42 2 1241 310 280 109 27 chr11 86098141 86098251 -35745605 - ID_B1 SINE B4 -23 201 83 2 1241 466 290 37 9 chr11 86098290 86098468 -35745388 - B3A SINE B2 -9 186 1 2 1241 181 277 0 41 chr11 86099377 86099426 -35744430 - MIR SINE MIR -119 89 43 2 1241 233 237 17 0 chr11 86099501 86099560 -35744296 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1241 30 45 0 0 chr11 86100554 86100598 -35743258 + AT_rich Low_complexity Low_complexity 1 44 0 2 1241 534 189 135 32 chr11 86101176 86101302 -35742554 - B1_Mur2 SINE Alu -6 143 5 2 1241 459 365 39 0 chr11 86101365 86101543 -35742313 - MER58A DNA MER1_type -3 221 37 2 1241 682 241 36 0 chr11 86101978 86102115 -35741741 - ID_B1 SINE B4 0 224 83 2 1241 251 292 0 30 chr11 86102136 86102203 -35741653 - B4A SINE B4 -137 155 91 2 1241 275 242 0 31 chr11 86102143 86102207 -35741649 - PB1D7 SINE Alu -57 63 2 2 1241 275 291 9 46 chr11 86102829 86102937 -35740919 - PB1D10 SINE Alu -10 107 4 2 1241 352 299 83 39 chr11 86103290 86103471 -35740385 - MIR SINE MIR -27 235 47 2 1241 22 80 0 0 chr11 86103818 86103868 -35739988 + AT_rich Low_complexity Low_complexity 1 50 0 2 1241 369 111 0 31 chr11 86104942 86105007 -35738849 + B1_Mus1 SINE Alu 40 102 -46 2 1241 426 144 14 10 chr11 86104968 86105063 -35738793 - B1_Mus1 SINE Alu -51 96 1 2 1241 624 251 110 0 chr11 86105290 86105517 -35738339 + L1M3 LINE L1 5326 5577 -603 2 1241 1189 41 0 7 chr11 86105706 86105854 -35738002 + B1_Mus2 SINE Alu 1 147 0 2 1241 597 158 287 0 chr11 86105921 86106085 -35737771 + B3 SINE B2 2 212 -4 2 1241 226 280 78 57 chr11 86106092 86106285 -35737571 + L1MB8 LINE L1 5952 6148 -30 2 1241 289 286 81 23 chr11 86106404 86106490 -35737366 - BC1_Mm scRNA scRNA -59 93 3 2 1241 570 218 18 9 chr11 86107110 86107221 -35736635 - PB1D9 SINE Alu -4 116 5 2 1241 311 283 176 28 chr11 86107397 86107539 -35736317 + RSINE1 SINE B4 3 165 0 2 1241 287 304 0 0 chr11 86107952 86108008 -35735848 + ID4_ SINE ID 2 57 -26 2 1241 3738 124 163 1 chr11 86108008 86108659 -35735197 + RMER6A LTR ERVK 1 756 0 2 1241 261 291 53 97 chr11 86108767 86108808 -35735048 - MER5A DNA MER1_type -63 126 86 2 1241 1595 22 0 11 chr11 86108808 86108992 -35734864 + B2_Mm1a SINE B2 2 183 -10 2 1241 261 291 53 97 chr11 86108992 86109064 -35734792 - MER5A DNA MER1_type -104 85 18 2 1241 207 314 115 36 chr11 86109176 86109315 -35734541 + L2a LINE L2 1597 1746 -1673 2 1241 449 185 82 37 chr11 86109347 86109482 -35734374 + L1MA7 LINE L1 6030 6170 -121 2 1241 224 240 265 39 chr11 86109642 86109902 -35733954 + L2a LINE L2 1895 2213 -1206 2 1241 589 298 33 13 chr11 86109931 86110084 -35733772 - ID_B1 SINE B4 -13 211 56 3 1241 449 350 7 0 chr11 86110483 86110620 -35733236 + RSINE1 SINE B4 24 161 -4 3 1241 334 338 89 49 chr11 86110712 86111036 -35732820 + L2a LINE L2 2994 3330 -96 2 1241 231 347 0 160 chr11 86111040 86111184 -35732672 + B4 SINE B4 171 291 -1 3 1241 698 172 97 0 chr11 86111517 86111651 -35732205 - B1_Mur2 SINE Alu -1 148 2 3 1241 605 281 20 62 chr11 86112943 86113155 -35730701 + B3A SINE B2 3 209 -7 3 1241 597 185 108 29 chr11 86113340 86113479 -35730377 - B1_Mur4 SINE Alu 0 150 1 3 1241 782 299 23 60 chr11 86113777 86114079 -35729777 + B4A SINE B4 2 292 0 3 1242 427 340 14 28 chr11 86115553 86115698 -35728158 - ID_B1 SINE B4 -2 222 80 3 1242 1265 75 6 44 chr11 86116163 86116344 -35727512 - B2_Mm1t SINE B2 -18 175 2 3 1242 1213 54 0 0 chr11 86116496 86116643 -35727213 - B1_Mus2 SINE Alu 0 147 1 3 1242 799 317 7 14 chr11 86117507 86117782 -35726074 - B4A SINE B4 -18 274 2 3 1242 528 16 0 0 chr11 86117986 86118047 -35725809 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1242 281 275 67 0 chr11 86118056 86118176 -35725680 + L1MA4 LINE L1 5981 6108 -192 3 1242 25 0 0 0 chr11 86118190 86118215 -35725641 + AT_rich Low_complexity Low_complexity 1 25 0 3 1242 264 248 97 79 chr11 86118329 86118443 -35725413 - L1M2 LINE L1 -1314 4829 4714 3 1242 716 171 31 31 chr11 86118458 86118585 -35725271 - B1_Mus1 SINE Alu -12 136 10 3 1242 318 255 34 128 chr11 86118491 86118608 -35725248 - MT2B LTR ERVL -344 257 152 3 1242 264 315 76 0 chr11 86118629 86118721 -35725135 - B1F2 SINE Alu -50 99 1 3 1242 230 260 0 94 chr11 86118753 86118838 -35725018 - L1M2 LINE L1 -1478 4665 4589 3 1242 415 143 220 0 chr11 86119344 86119435 -35724421 + PB1D9 SINE Alu 9 119 -1 3 1242 264 294 82 75 chr11 86119492 86119639 -35724217 + B1F1 SINE Alu 2 149 0 3 1242 219 69 0 0 chr11 86119944 86119973 -35723883 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1242 817 143 14 14 chr11 86120011 86120153 -35723703 - B1_Mus2 SINE Alu -1 146 5 3 1242 250 250 0 0 chr11 86120316 86120368 -35723488 - RSINE1 SINE B4 -112 53 2 3 1242 191 319 58 0 chr11 86120609 86120678 -35723178 - MIRb SINE MIR 0 268 196 3 1242 212 396 49 10 chr11 86120717 86120819 -35723037 - PB1D10 SINE Alu -11 106 1 3 1242 489 246 146 0 chr11 86120858 86120988 -35722868 - B1F2 SINE Alu 0 149 1 3 1242 231 36 0 0 chr11 86121383 86121411 -35722445 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1242 281 276 184 0 chr11 86121462 86121538 -35722318 - RSINE1 SINE B4 -72 93 4 3 1242 1166 74 34 8 chr11 86121835 86122023 -35721833 + B2_Mm2 SINE B2 7 195 0 3 1242 192 77 0 0 chr11 86122023 86122049 -35721807 + (GAA)n Simple_repeat Simple_repeat 2 27 0 3 1242 261 309 211 48 chr11 86123408 86123820 -35720036 + L2a LINE L2 2946 3424 -2 3 1242 361 173 0 100 chr11 86125967 86126057 -35717799 - B1_Mur2 SINE Alu -1 148 68 3 1242 878 56 104 0 chr11 86126435 86126560 -35717296 + B1_Mus1 SINE Alu 2 139 -9 3 1242 436 246 16 73 chr11 86126756 86126879 -35716977 + B3 SINE B2 1 116 -100 3 1242 848 141 30 0 chr11 86127628 86127763 -35716093 + B1_Mur4 SINE Alu 2 140 -10 3 1242 432 0 0 0 chr11 86127763 86127811 -35716045 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 3 1242 208 135 0 0 chr11 86127911 86127948 -35715908 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1242 636 190 82 62 chr11 86127988 86128134 -35715722 - B1_Mur4 SINE Alu 0 150 2 3 1242 416 315 74 14 chr11 86128384 86128532 -35715324 - MER20 DNA MER1_type -31 188 32 3 1242 1362 94 21 0 chr11 86128611 86128802 -35715054 - B2_Mm2 SINE B2 0 195 1 3 1242 191 222 0 0 chr11 86129066 86129102 -35714754 - L4 LINE RTE -1364 665 630 3 1242 243 259 119 85 chr11 86129538 86129656 -35714200 - L2a LINE L2 -30 3396 3275 3 1242 369 65 0 0 chr11 86129895 86129954 -35713902 + B1_Mus2 SINE Alu 1 59 -90 3 1242 572 241 173 34 chr11 86130011 86130441 -35713415 + L1MA4 LINE L1 5376 5899 -401 3 1242 318 26 0 0 chr11 86130442 86130481 -35713375 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1242 613 241 8 0 chr11 86130767 86130900 -35712956 + U3 snRNA snRNA 1 134 -83 3 1242 212 354 0 0 chr11 86131066 86131145 -35712711 + ID SINE ID 6 84 -140 3 1242 1592 37 16 0 chr11 86131228 86131418 -35712438 + B2_Mm1a SINE B2 1 193 0 3 1242 725 227 106 17 chr11 86131430 86131609 -35712247 + B3 SINE B2 10 204 -12 3 1242 1087 83 0 27 chr11 86131625 86131774 -35712082 + B1_Mus1 SINE Alu 2 146 -2 3 1242 1018 214 52 5 chr11 86133712 86133905 -35709951 + B3 SINE B2 2 203 -13 3 1242 278 266 63 110 chr11 86134771 86135025 -35708831 + L1MC LINE L1 3645 3886 -2260 3 1242 432 202 225 65 chr11 86135128 86135297 -35708559 + B3A SINE B2 3 198 0 3 1242 407 177 291 34 chr11 86135409 86135526 -35708330 - B1_Mus2 SINE Alu 0 147 1 3 1242 282 152 292 8 chr11 86135679 86135799 -35708057 + B3 SINE B2 4 216 0 3 1242 269 279 0 29 chr11 86136322 86136392 -35707464 - ID SINE ID -140 84 17 3 1242 604 311 18 41 chr11 86136470 86136678 -35707178 + Charlie1a DNA MER1_type 305 507 -948 3 1242 252 333 67 37 chr11 86136678 86136812 -35707044 + B1F SINE Alu 1 138 -11 3 1242 455 243 67 13 chr11 86136979 86137129 -35706727 + Charlie1a DNA MER1_type 713 870 -585 3 1242 698 189 15 22 chr11 86137186 86137321 -35706535 + B1_Mur3 SINE Alu 5 138 -11 3 1242 746 257 33 16 chr11 86137421 86137603 -35706253 + B3 SINE B2 25 209 -7 3 1242 272 264 42 0 chr11 86137795 86137867 -35705989 - ID SINE ID -149 75 1 3 1242 528 186 62 31 chr11 86137952 86138080 -35705776 + B1_Mur3 SINE Alu 1 132 -17 3 1242 1416 104 0 5 chr11 86138225 86138419 -35705437 + B2_Mm2 SINE B2 3 195 0 3 1242 365 58 14 42 chr11 86139456 86139528 -35704328 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1242 534 240 98 27 chr11 86139576 86139760 -35704096 - Cheshire DNA MER1_type -2137 283 87 3 1242 534 297 47 5 chr11 86139768 86139961 -35703895 + B3 SINE B2 4 204 -12 3 1242 519 134 252 26 chr11 86139990 86140105 -35703751 - B1_Mm SINE Alu -5 142 2 3 1242 286 330 50 0 chr11 86140945 86140969 -35702887 + ID SINE ID 56 84 -140 3 1242 334 288 67 9 chr11 86140969 86141074 -35702782 + PB1D10 SINE Alu 3 113 -4 3 1242 207 164 0 69 chr11 86141474 86141505 -35702351 + T-rich Low_complexity Low_complexity 41 71 0 3 1242 737 170 19 64 chr11 86141505 86141662 -35702194 - B1_Mur4 SINE Alu 0 150 1 3 1242 207 164 0 69 chr11 86141662 86141702 -35702154 + T-rich Low_complexity Low_complexity 6 40 0 3 1242 531 244 58 16 chr11 86141750 86141871 -35701985 + B1_Mus2 SINE Alu 1 126 -21 3 1242 189 274 0 0 chr11 86141871 86141933 -35701923 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 3 1242 298 290 57 0 chr11 86142391 86142515 -35701341 + L1MC4 LINE L1 7801 7931 -111 3 1242 327 349 95 91 chr11 86143041 86143293 -35700563 - B4A SINE B4 -27 265 13 3 1242 25 31 0 0 chr11 86143357 86143389 -35700467 + AT_rich Low_complexity Low_complexity 1 32 0 3 1242 382 255 20 10 chr11 86143528 86143627 -35700229 + PB1D10 SINE Alu 1 100 -17 3 1242 255 305 109 51 chr11 86143961 86144099 -35699757 - MLT1H-int LTR MaLR -1156 253 108 3 1242 26 30 0 0 chr11 86144805 86144838 -35699018 + AT_rich Low_complexity Low_complexity 1 33 0 3 1242 853 255 18 27 chr11 86145616 86145838 -35698018 - ID_B1 SINE B4 -3 221 2 3 1242 671 192 46 0 chr11 86146446 86146576 -35697280 + B1_Mur4 SINE Alu 8 143 -7 3 1242 276 227 121 20 chr11 86146708 86146807 -35697049 + HY1 scRNA scRNA 2 110 -2 3 1242 317 276 76 0 chr11 86147175 86147280 -35696576 - PB1D9 SINE Alu -7 113 1 3 1242 21 36 0 0 chr11 86147313 86147341 -35696515 + AT_rich Low_complexity Low_complexity 1 28 0 3 1242 225 0 0 0 chr11 86147446 86147471 -35696385 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1242 587 223 19 127 chr11 86147511 86147526 -35696330 - B2_Mm2 SINE B2 -8 187 173 3 1242 180 0 0 0 chr11 86147526 86147546 -35696310 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 3 1242 988 208 22 9 chr11 86147546 86147735 -35696121 - B3 SINE B2 -25 191 5 3 1242 474 259 102 15 chr11 86149004 86149141 -35694715 - B1F2 SINE Alu 0 149 1 3 1242 1179 27 7 7 chr11 86149549 86149696 -35694160 + B1_Mus1 SINE Alu 2 148 0 3 1242 372 43 0 0 chr11 86149977 86150023 -35693833 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1242 1196 48 7 0 chr11 86150023 86150169 -35693687 - B1_Mus1 SINE Alu 0 148 2 3 1242 473 294 103 0 chr11 86150233 86150379 -35693477 - RSINE1 SINE B4 -4 161 1 3 1242 264 77 0 0 chr11 86150425 86150464 -35693392 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 3 1242 1183 35 0 0 chr11 86150464 86150602 -35693254 - B1_Mm SINE Alu -3 144 7 3 1242 701 253 0 45 chr11 86151255 86151412 -35692444 - RSINE1 SINE B4 0 165 16 3 1242 189 132 0 0 chr11 86151438 86151476 -35692380 + (GAA)n Simple_repeat Simple_repeat 1 38 0 3 1242 255 61 0 0 chr11 86151623 86151656 -35692200 + (CTTG)n Simple_repeat Simple_repeat 2 34 0 3 1242 361 283 68 91 chr11 86151656 86151788 -35692068 - B1F2 SINE Alu -11 138 10 3 1242 293 337 34 142 chr11 86151788 86151860 -35691996 - ID_B1 SINE B4 -11 213 32 3 1242 205 292 76 15 chr11 86151861 86151927 -35691929 - MIRm SINE MIR -104 172 103 4 1242 825 167 29 0 chr11 86151951 86152089 -35691767 - B1_Mur2 SINE Alu -7 142 1 4 1242 251 292 15 0 chr11 86152118 86152183 -35691673 + ID4 SINE ID 4 69 -14 4 1242 1451 273 89 24 chr11 86152248 86152867 -35690989 + L1MB4 LINE L1 5286 5944 -236 4 1242 1184 109 16 27 chr11 86152889 86153077 -35690779 + B2_Mm2 SINE B2 8 193 -2 4 1242 336 48 0 0 chr11 86153080 86153122 -35690734 + (GGGAGA)n Simple_repeat Simple_repeat 6 47 0 4 1242 213 94 0 0 chr11 86153122 86153154 -35690702 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 4 1242 29 60 0 0 chr11 86153360 86153410 -35690446 + AT_rich Low_complexity Low_complexity 1 50 0 4 1242 646 204 29 7 chr11 86153421 86153559 -35690297 - B1_Mur2 SINE Alu -8 141 1 4 1242 198 0 0 0 chr11 86153634 86153656 -35690200 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 4 1242 445 231 300 0 chr11 86153656 86153816 -35690040 - ID_B1 SINE B4 -15 209 2 4 1242 428 318 88 0 chr11 86154852 86155022 -35688834 + MER33 DNA MER1_type 32 216 -108 4 1242 1038 44 70 35 chr11 86155052 86155194 -35688662 - B1_Mm SINE Alu 0 147 1 4 1242 1101 82 0 13 chr11 86155310 86155459 -35688397 + B1_Mus2 SINE Alu 1 147 0 4 1242 411 305 116 11 chr11 86155947 86156136 -35687720 + MER3 DNA MER1_type 1 209 0 4 1242 377 265 92 46 chr11 86156247 86156334 -35687522 - PB1D10 SINE Alu -26 91 1 4 1242 213 275 0 28 chr11 86156521 86156592 -35687264 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 4 1242 495 291 26 0 chr11 86156762 86156879 -35686977 + B1F SINE Alu 1 120 -29 4 1242 498 301 30 55 chr11 86157036 86157201 -35686655 + RSINE1 SINE B4 2 162 -3 4 1242 338 260 135 0 chr11 86157836 86157932 -35685924 + PB1 SINE Alu 17 125 -2 4 1242 224 288 179 15 chr11 86157945 86158012 -35685844 + ID4 SINE ID 5 82 -1 4 1242 378 0 0 0 chr11 86158070 86158112 -35685744 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1242 372 249 10 42 chr11 86158141 86158254 -35685602 - B4A SINE B4 -108 184 78 4 1242 299 243 8 123 chr11 86158380 86158398 -35685458 + MT2B LTR ERVL 150 153 -448 4 1242 675 224 0 0 chr11 86158398 86158523 -35685333 + B1_Mur4 SINE Alu 2 126 -24 4 1242 750 154 0 0 chr11 86158534 86158664 -35685192 + GA-rich Low_complexity Low_complexity 1 130 0 4 1242 1021 189 48 19 chr11 86158827 86159037 -35684819 + B3 SINE B2 1 216 0 4 1242 401 173 27 0 chr11 86159088 86159163 -35684693 + B1_Mur1 SINE Alu 67 143 -6 4 1242 457 229 57 28 chr11 86159697 86159823 -35684033 - PB1D9 SINE Alu -18 129 7 4 1242 245 315 81 66 chr11 86159729 86159865 -35683991 - B4 SINE B4 -102 190 53 4 1242 543 236 15 30 chr11 86160614 86160745 -35683111 - B1F SINE Alu -20 129 1 4 1242 286 294 31 92 chr11 86160745 86160832 -35683024 - MT2B LTR ERVL -445 156 82 4 1242 486 216 33 75 chr11 86160777 86160897 -35682959 - PB1D10 SINE Alu -2 115 1 4 1242 567 255 42 14 chr11 86162232 86162375 -35681481 + RSINE1 SINE B4 1 147 -18 4 1242 225 0 0 0 chr11 86162378 86162403 -35681453 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1242 441 0 0 0 chr11 86162551 86162600 -35681256 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1242 194 111 27 27 chr11 86164325 86164362 -35679494 - L2 LINE L2 -2657 762 726 4 1242 567 292 76 29 chr11 86164792 86165134 -35678722 + L1MC3 LINE L1 7428 7785 0 4 1242 270 0 0 0 chr11 86165621 86165651 -35678205 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1242 240 233 152 65 chr11 86166259 86166351 -35677505 + PB1D10 SINE Alu 12 111 -6 4 1242 265 354 0 20 chr11 86166573 86166674 -35677182 + ID4 SINE ID 2 100 -52 4 1242 359 283 35 9 chr11 86166896 86167010 -35676846 + PB1D10 SINE Alu 1 117 0 4 1242 212 243 182 64 chr11 86167221 86167331 -35676525 + B1_Mm SINE Alu 1 123 -24 4 1242 256 285 126 100 chr11 86167615 86167884 -35675972 + B4 SINE B4 1 276 -16 4 1242 43 56 0 0 chr11 86169060 86169131 -35674725 + AT_rich Low_complexity Low_complexity 1 71 0 4 1242 207 0 0 0 chr11 86169633 86169656 -35674200 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1242 23 54 0 0 chr11 86170918 86170955 -35672901 + GC_rich Low_complexity Low_complexity 1 37 0 4 1242 210 143 17 35 chr11 86171141 86171199 -35672657 + (CCG)n Simple_repeat Simple_repeat 2 58 0 4 1242 31 68 0 0 chr11 86171211 86171270 -35672586 + GC_rich Low_complexity Low_complexity 1 59 0 4 1242 191 167 0 53 chr11 86171339 86171396 -35672460 + A-rich Low_complexity Low_complexity 1 54 0 4 1242 270 207 0 0 chr11 86172100 86172158 -35671698 + A-rich Low_complexity Low_complexity 1 58 0 4 1242 311 177 16 0 chr11 86172356 86172418 -35671438 + MIR SINE MIR 90 152 -110 4 1242 592 236 50 0 chr11 86172819 86172959 -35670897 + B1_Mur1 SINE Alu 3 149 0 4 1242 375 271 18 27 chr11 86173320 86173430 -35670426 + PB1D10 SINE Alu 9 117 0 4 1242 224 311 0 0 chr11 86173913 86173974 -35669882 + C-rich Low_complexity Low_complexity 4 64 0 4 1242 275 196 0 0 chr11 86174347 86174398 -35669458 + L1MC1 LINE L1 6134 6184 -149 4 1242 26 50 0 0 chr11 86174399 86174439 -35669417 + AT_rich Low_complexity Low_complexity 1 40 0 4 1242 198 71 0 0 chr11 86174442 86174470 -35669386 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1242 352 161 0 61 chr11 86174470 86174536 -35669320 + PB1D10 SINE Alu 37 98 -19 4 1242 366 123 0 0 chr11 86174537 86174594 -35669262 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 4 1242 498 275 16 35 chr11 86175265 86175480 -35668376 - MER33 DNA MER1_type -122 202 2 4 1242 1236 41 7 0 chr11 86176353 86176499 -35667357 - B1_Mus2 SINE Alu 0 147 1 4 1242 258 105 0 0 chr11 86176869 86176907 -35666949 + (GGA)n Simple_repeat Simple_repeat 3 40 0 4 1242 1072 52 255 0 chr11 86177234 86177387 -35666469 - B2_Mm2 SINE B2 -3 192 1 4 1242 620 226 22 8 chr11 86177841 86177975 -35665881 + ID_B1 SINE B4 88 223 -1 4 1242 279 0 0 0 chr11 86178038 86178069 -35665787 + (GTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1242 858 293 131 81 chr11 86178079 86178599 -35665257 - MLT1F2 LTR MaLR -12 548 3 4 1242 837 259 116 20 chr11 86178622 86178925 -35664931 - MLT1F2-int LTR MaLR -3 1486 1155 4 1242 466 233 125 0 chr11 86178914 86179034 -35664822 + ID_B1 SINE B4 86 220 -4 4 1242 432 0 0 0 chr11 86179038 86179086 -35664770 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1242 405 315 40 20 chr11 86179199 86179351 -35664505 - MLT1F2 LTR MaLR -18 530 376 4 1242 321 156 0 0 chr11 86179712 86179789 -35664067 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1242 380 257 10 10 chr11 86179857 86179959 -35663897 + MER103 DNA DNA 44 145 -21 4 1242 342 0 0 0 chr11 86180092 86180130 -35663726 + (CATA)n Simple_repeat Simple_repeat 2 39 0 4 1242 279 324 0 0 chr11 86180674 86180745 -35663111 + ID4_ SINE ID 2 72 -11 4 1242 492 224 8 57 chr11 86180775 86180898 -35662958 + B1F SINE Alu 11 127 -22 4 1242 211 239 0 0 chr11 86180899 86180945 -35662911 + A-rich Low_complexity Low_complexity 1 46 0 4 1242 325 302 8 17 chr11 86181079 86181197 -35662659 - MLT1F2 LTR MaLR -180 368 252 4 1242 582 15 0 0 chr11 86181660 86181727 -35662129 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 4 1242 884 123 28 28 chr11 86181727 86181869 -35661987 - B1_Mur3 SINE Alu -7 142 1 4 1242 851 303 53 31 chr11 86181869 86182251 -35661605 + MTE2a LTR MaLR 11 379 0 4 1242 938 294 53 0 chr11 86182264 86182509 -35661347 + MTE2a-int LTR MaLR 15 272 -1308 4 1242 690 203 8 0 chr11 86182518 86182646 -35661210 - B1_Mur1 SINE Alu -2 147 19 4 1242 240 274 40 14 chr11 86182664 86182738 -35661118 + MTE2a-int LTR MaLR 279 354 -1226 4 1242 525 175 10 10 chr11 86182729 86182833 -35661023 + MTE2a LTR MaLR 276 379 0 4 1242 232 311 142 88 chr11 86182839 86183047 -35660809 + B4 SINE B4 43 264 -28 4 1242 387 0 0 0 chr11 86183047 86183090 -35660766 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1242 232 311 142 88 chr11 86183090 86183107 -35660749 + B4 SINE B4 265 280 -12 4 1242 411 296 56 0 chr11 86183623 86183731 -35660125 + RSINE1 SINE B4 24 137 -28 4 1242 263 273 133 26 chr11 86184036 86184149 -35659707 + MLT1H LTR MaLR 398 522 -27 4 1242 337 184 0 18 chr11 86184471 86184582 -35659274 + GA-rich Low_complexity Low_complexity 2 110 0 4 1242 278 282 97 0 chr11 86184606 86184709 -35659147 - MIRb SINE MIR -67 201 89 4 1242 804 169 0 0 chr11 86185432 86185610 -35658246 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1242 328 89 54 22 chr11 86185820 86185899 -35657957 + T-rich Low_complexity Low_complexity 16 97 0 4 1242 1254 47 0 0 chr11 86185899 86186047 -35657809 - B1_Mus1 SINE Alu 0 148 1 4 1242 328 89 54 22 chr11 86186047 86186059 -35657797 + T-rich Low_complexity Low_complexity 3 15 0 4 1242 947 140 0 0 chr11 86186067 86186210 -35657646 - B1_Mur4 SINE Alu -7 143 1 4 1242 348 292 17 26 chr11 86186306 86186422 -35657434 + PB1D10 SINE Alu 1 115 -2 4 1242 707 238 69 42 chr11 86186510 86186699 -35657157 - B3 SINE B2 -8 208 15 4 1242 417 198 112 9 chr11 86186817 86186924 -35656932 + ID_B1 SINE B4 92 209 -15 4 1242 533 264 0 122 chr11 86186969 86187133 -35656723 + ID_B1 SINE B4 80 223 -1 4 1242 507 73 0 0 chr11 86187134 86187202 -35656654 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 4 1242 1349 281 74 17 chr11 86187213 86187752 -35656104 + L1ME3A LINE L1 5562 6131 -42 4 1242 837 101 0 12 chr11 86188393 86188530 -35655326 + B1_Mus1 SINE Alu 19 148 0 4 1242 488 86 14 0 chr11 86189341 86189411 -35654445 + B1_Mur4 SINE Alu 66 136 -14 4 1242 414 0 0 0 chr11 86189411 86189457 -35654399 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1242 255 322 85 0 chr11 86189457 86189575 -35654281 + MIRb SINE MIR 66 193 -75 5 1242 632 182 8 8 chr11 86189904 86190026 -35653830 + RSINE1 SINE B4 2 123 -42 5 1242 723 161 0 0 chr11 86190732 86190844 -35653012 + B1_Mur2 SINE Alu 19 130 -19 5 1242 414 0 0 0 chr11 86190849 86190895 -35652961 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1242 225 0 0 0 chr11 86190895 86190919 -35652937 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1242 407 312 93 93 chr11 86190930 86191004 -35652852 + B4A SINE B4 10 75 -217 5 1242 1195 35 0 7 chr11 86191004 86191148 -35652708 + B1_Mus2 SINE Alu 1 143 -4 5 1242 819 57 0 0 chr11 86191150 86191255 -35652601 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 5 1242 587 273 27 57 chr11 86191255 86191456 -35652400 + B4 SINE B4 76 288 -4 5 1242 420 192 0 25 chr11 86191768 86191848 -35652008 + PB1 SINE Alu 36 113 -14 5 1242 1751 16 0 0 chr11 86191849 86192042 -35651814 - B2_Mm1a SINE B2 0 193 1 5 1242 23 54 0 0 chr11 86192051 86192088 -35651768 + AT_rich Low_complexity Low_complexity 1 37 0 5 1242 326 329 42 49 chr11 86192185 86192329 -35651527 + MIRb SINE MIR 16 158 -110 5 1242 226 250 73 55 chr11 86192434 86192544 -35651312 - PB1D10 SINE Alu -1 116 5 5 1242 1035 259 134 27 chr11 86192691 86193140 -35650716 + MLT1D LTR MaLR 1 497 -8 5 1242 665 239 28 0 chr11 86193424 86193566 -35650290 + B1_Mur1 SINE Alu 2 147 -2 5 1242 848 142 6 108 chr11 86193596 86193762 -35650094 - B1_Mur2 SINE Alu 0 149 1 5 1242 25 31 0 0 chr11 86193762 86193794 -35650062 + AT_rich Low_complexity Low_complexity 1 32 0 5 1242 387 273 9 52 chr11 86194516 86194632 -35649224 + MLT1M LTR MaLR 95 205 -467 5 1242 785 246 69 0 chr11 86195791 86195994 -35647862 + B4 SINE B4 1 217 -75 5 1242 687 75 0 0 chr11 86196025 86196119 -35647737 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 1242 634 143 8 8 chr11 86196635 86196755 -35647101 + CT-rich Low_complexity Low_complexity 2 121 0 5 1242 238 269 67 92 chr11 86196763 86196882 -35646974 - PB1D10 SINE Alu -1 116 1 5 1242 501 141 0 0 chr11 86196919 86197004 -35646852 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 5 1242 292 247 25 0 chr11 86197004 86197085 -35646771 - ID4 SINE ID 0 83 1 5 1242 349 252 16 57 chr11 86197312 86197434 -35646422 - PB1D9 SINE Alu 0 120 4 5 1242 236 366 0 41 chr11 86197463 86197560 -35646296 - ID_B1 SINE B4 -54 170 78 5 1242 446 252 65 19 chr11 86197567 86197721 -35646135 - L1MC2 LINE L1 -182 6162 6002 5 1242 258 300 82 41 chr11 86197925 86198071 -35645785 + L2c LINE L2 3230 3381 -6 5 1242 1455 60 5 11 chr11 86198197 86198383 -35645473 + B2_Mm1a SINE B2 2 186 -7 5 1242 252 208 0 0 chr11 86198391 86198444 -35645412 + RSINE1 SINE B4 1 53 -112 5 1242 801 109 0 68 chr11 86198445 86198593 -35645263 + B1_Mus2 SINE Alu 5 142 -5 5 1242 234 0 0 0 chr11 86198597 86198623 -35645233 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5 1242 291 240 16 16 chr11 86198623 86198651 -35645205 + ORR1B1-int LTR MaLR 621 648 -861 5 1242 819 122 0 8 chr11 86198651 86198783 -35645073 + B1_Mm SINE Alu 2 132 -15 5 1242 364 314 0 9 chr11 86199189 86199295 -35644561 - L2 LINE L2 -2875 544 440 5 1242 207 0 0 0 chr11 86200949 86200972 -35642884 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1242 589 308 47 19 chr11 86200973 86201185 -35642671 - Tigger16b DNA Tigger -68 269 52 5 1242 337 302 208 8 chr11 86201595 86201715 -35642141 + RSINE1 SINE B4 11 154 -11 5 1242 617 124 15 58 chr11 86201732 86202007 -35641849 + (CAGAGA)n Simple_repeat Simple_repeat 1 262 0 5 1242 1275 60 0 0 chr11 86202017 86202183 -35641673 + B2_Mm2 SINE B2 3 168 -27 5 1242 884 266 91 0 chr11 86202952 86203215 -35640641 - B4A SINE B4 0 292 6 5 1242 1075 64 35 7 chr11 86204472 86204614 -35639242 - B1_Mm SINE Alu 0 147 2 5 1242 423 167 14 0 chr11 86204642 86204714 -35639142 + PB1D9 SINE Alu 10 82 -38 5 1242 200 35 35 0 chr11 86204717 86204746 -35639110 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1242 278 200 53 13 chr11 86204774 86204850 -35639006 - RMER15 LTR ERVL -104 471 393 5 1242 22 35 0 0 chr11 86204956 86204985 -35638871 + AT_rich Low_complexity Low_complexity 1 29 0 5 1242 2033 189 27 0 chr11 86205704 86206112 -35637744 - MTD LTR MaLR 0 419 1 5 1242 231 114 0 0 chr11 86206290 86206334 -35637522 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1242 881 172 28 0 chr11 86206546 86206691 -35637165 + B1_Mur2 SINE Alu 1 149 0 5 1242 721 228 71 38 chr11 86206710 86206920 -35636936 + ID_B1 SINE B4 1 217 -7 5 1242 477 299 26 0 chr11 86206930 86207047 -35636809 + B1_Mur1 SINE Alu 13 132 -17 5 1242 377 252 127 25 chr11 86207057 86207077 -35636779 - ID_B1 SINE B4 -2 222 93 5 1242 603 163 41 0 chr11 86207077 86207175 -35636681 - B1_Mur2 SINE Alu -36 113 12 5 1242 369 0 0 0 chr11 86207197 86207238 -35636618 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1242 366 42 0 0 chr11 86207244 86207292 -35636564 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1242 374 272 112 20 chr11 86207379 86207531 -35636325 + B3A SINE B2 1 168 -27 5 1242 486 317 56 69 chr11 86207582 86207870 -35635986 + B4 SINE B4 9 292 0 5 1242 1174 74 0 0 chr11 86208204 86208352 -35635504 - B1_Mus1 SINE Alu 0 148 1 5 1242 443 227 140 14 chr11 86208433 86208576 -35635280 - RSINE1 SINE B4 -2 163 3 5 1242 501 194 61 0 chr11 86208585 86208683 -35635173 - PB1D10 SINE Alu -6 111 8 5 1242 22 0 0 0 chr11 86208683 86208705 -35635151 + AT_rich Low_complexity Low_complexity 1 22 0 5 1242 246 32 0 0 chr11 86209717 86209748 -35634108 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1242 609 252 22 0 chr11 86209821 86209956 -35633900 + B1F SINE Alu 1 138 -11 5 1242 471 185 0 0 chr11 86209963 86210055 -35633801 + GA-rich Low_complexity Low_complexity 2 93 0 5 1242 893 150 13 20 chr11 86211496 86211646 -35632210 + B1_Mur3 SINE Alu 1 149 0 5 1242 468 282 54 93 chr11 86211762 86212140 -35631716 + ORR1E LTR MaLR 1 377 -2 5 1242 678 346 79 45 chr11 86212251 86212760 -35631096 - MT2A LTR ERVL -7 526 1 5 1242 316 238 125 29 chr11 86212760 86212863 -35630993 - PB1 SINE Alu -13 114 2 5 1242 710 155 0 65 chr11 86213117 86213255 -35630601 + B1_Mur3 SINE Alu 21 149 0 5 1242 1761 181 88 25 chr11 86213532 86213928 -35629928 - MTC LTR MaLR 0 421 1 5 1242 1188 182 9 5 chr11 86213952 86214167 -35629689 + B3 SINE B2 1 216 0 5 1242 29 28 0 0 chr11 86214278 86214314 -35629542 + AT_rich Low_complexity Low_complexity 1 36 0 5 1242 717 180 0 0 chr11 86214319 86214441 -35629415 - B1_Mus2 SINE Alu -20 127 6 5 1242 556 240 101 0 chr11 86214510 86214639 -35629217 + RSINE1 SINE B4 3 144 -21 5 1242 513 104 0 0 chr11 86214664 86214741 -35629115 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1242 33 0 0 0 chr11 86214741 86214774 -35629082 + AT_rich Low_complexity Low_complexity 1 33 0 5 1242 509 237 135 16 chr11 86215033 86215226 -35628630 + B4A SINE B4 1 216 -76 5 1242 882 141 42 0 chr11 86215226 86215368 -35628488 + B1_Mur4 SINE Alu 3 150 0 5 1242 198 0 0 0 chr11 86215399 86215421 -35628435 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1242 206 199 127 14 chr11 86215647 86215717 -35628139 - MIR SINE MIR -77 191 116 5 1242 1379 92 5 0 chr11 86215823 86216007 -35627849 - B2_Mm1a SINE B2 -8 185 1 5 1242 325 230 27 0 chr11 86216026 86216100 -35627756 - B1F SINE Alu -2 147 72 5 1242 34 0 0 0 chr11 86216863 86216897 -35626959 + AT_rich Low_complexity Low_complexity 1 34 0 5 1242 686 219 13 32 chr11 86216899 86217055 -35626801 - RSINE1 SINE B4 0 165 13 5 1242 720 239 19 0 chr11 86218923 86219078 -35624778 + B3 SINE B2 5 162 -54 5 1242 186 71 0 0 chr11 86219078 86219106 -35624750 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1242 637 268 27 5 chr11 86219106 86219134 -35624722 + B3A SINE B2 164 191 -7 5 1242 487 216 54 7 chr11 86219170 86219319 -35624537 - Lx9 LINE L1 -5 7639 7484 5 1242 249 159 0 0 chr11 86219405 86219449 -35624407 + (TTG)n Simple_repeat Simple_repeat 3 46 0 5 1242 580 233 33 0 chr11 86219470 86219590 -35624266 - B1_Mur3 SINE Alu -25 124 1 5 1242 350 297 76 8 chr11 86219485 86219604 -35624252 - B4 SINE B4 -94 198 72 5 1242 21 82 0 0 chr11 86219647 86219696 -35624160 + AT_rich Low_complexity Low_complexity 1 49 0 5 1242 314 287 39 117 chr11 86219703 86219857 -35623999 - RSINE1 SINE B4 0 165 24 5 1242 21 57 0 0 chr11 86219949 86219984 -35623872 + AT_rich Low_complexity Low_complexity 1 35 0 5 1242 1265 228 24 14 chr11 86220151 86220440 -35623416 - B4A SINE B4 0 292 1 5 1242 3156 121 41 14 chr11 86220736 86221222 -35622634 - RLTR19 LTR ERVK 0 499 1 5 1242 351 182 0 0 chr11 86221379 86221456 -35622400 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1242 632 272 18 37 chr11 86221737 86221901 -35621955 + RSINE1 SINE B4 5 165 0 5 1242 433 276 0 10 chr11 86222327 86222426 -35621430 + 5S rRNA rRNA 1 98 -23 5 1242 670 204 42 0 chr11 86222430 86222572 -35621284 + B1_Mur1 SINE Alu 2 149 0 5 1242 209 59 0 56 chr11 86222590 86222626 -35621230 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 5 1242 233 337 54 0 chr11 86223179 86223205 -35620651 - ID_B1 SINE B4 -121 103 7 6 1242 329 258 0 0 chr11 86223205 86223271 -35620585 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 6 1242 602 221 58 45 chr11 86223304 86223460 -35620396 + ORR1D1 LTR MaLR 3 160 -214 6 1242 402 39 0 0 chr11 86223580 86223632 -35620224 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1242 402 296 24 0 chr11 86223780 86223905 -35619951 + ID_B1 SINE B4 95 222 -2 6 1242 373 132 14 28 chr11 86223994 86224095 -35619761 - B1F1 SINE Alu 0 149 26 6 1242 773 290 57 42 chr11 86224175 86224506 -35619350 - MTE2a LTR MaLR -1 378 43 6 1242 278 148 0 18 chr11 86224941 86224996 -35618860 + AluF_3 SINE Alu 157 210 -101 6 1242 224 342 0 84 chr11 86225036 86225119 -35618737 + ID4 SINE ID 4 79 -4 6 1242 690 42 21 0 chr11 86225214 86225309 -35618547 - B1_Mus2 SINE Alu 0 147 51 6 1242 778 89 57 0 chr11 86225310 86225434 -35618422 + B1_Mur3 SINE Alu 19 149 0 6 1242 761 155 5 0 chr11 86226880 86227100 -35616756 + (CA)n Simple_repeat Simple_repeat 1 221 0 6 1242 462 231 73 9 chr11 86227456 86227565 -35616291 + B1F1 SINE Alu 2 117 -32 6 1242 387 254 82 37 chr11 86227457 86227592 -35616264 + ID_B1 SINE B4 84 224 0 6 1242 230 223 309 44 chr11 86228120 86228256 -35615600 + L1ME3A LINE L1 5998 6169 -4 6 1242 728 184 28 28 chr11 86228337 86228482 -35615374 + B1_Mus1 SINE Alu 3 147 -1 6 1242 1237 165 19 5 chr11 86228505 86228712 -35615144 + B3 SINE B2 1 210 -6 6 1242 1224 55 0 0 chr11 86228738 86228884 -35614972 - B1_Mus2 SINE Alu 0 147 2 6 1242 571 318 34 0 chr11 86229062 86229238 -35614618 - B4A SINE B4 0 292 111 6 1242 459 0 0 0 chr11 86229280 86229331 -35614525 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1242 454 338 7 20 chr11 86229333 86229484 -35614372 - RSINE1 SINE B4 -8 157 9 6 1242 681 13 0 0 chr11 86229874 86229952 -35613904 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1242 692 279 0 0 chr11 86229983 86230130 -35613726 - RSINE1 SINE B4 -17 148 2 6 1242 396 176 68 0 chr11 86230273 86230347 -35613509 - MamRep1161 DNA TcMar -872 85 7 6 1242 223 139 0 0 chr11 86231272 86231308 -35612548 + BC1_Mm scRNA scRNA 5 40 -112 6 1242 246 128 0 0 chr11 86231327 86231366 -35612490 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 6 1242 21 36 0 0 chr11 86231384 86231412 -35612444 + AT_rich Low_complexity Low_complexity 1 28 0 6 1242 245 29 29 0 chr11 86231441 86231475 -35612381 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1242 524 265 26 0 chr11 86231477 86231594 -35612262 - B3A SINE B2 -77 121 2 6 1242 675 279 8 86 chr11 86231601 86231844 -35612012 - ID_B1 SINE B4 0 224 1 6 1242 191 333 0 15 chr11 86231873 86231940 -35611916 - L2a LINE L2 -27 3399 3334 6 1242 567 306 50 36 chr11 86232160 86232441 -35611415 + B4A SINE B4 4 288 -4 6 1242 979 254 34 41 chr11 86232585 86232877 -35610979 + B4 SINE B4 3 292 0 6 1242 516 252 32 24 chr11 86232953 86233079 -35610777 + ID_B1 SINE B4 91 217 -7 6 1242 199 341 110 0 chr11 86233201 86233283 -35610573 + MIR SINE MIR 157 247 -15 6 1242 856 223 15 10 chr11 86233888 86234083 -35609773 + B3 SINE B2 9 204 -12 6 1242 423 0 0 0 chr11 86234083 86234130 -35609726 + (TAG)n Simple_repeat Simple_repeat 2 48 0 6 1242 2828 153 98 4 chr11 86234797 86235329 -35608527 - RMER4B LTR ERVK -2 583 2 6 1242 2026 150 6 12 chr11 86235341 86235679 -35608177 - MTC LTR MaLR 0 421 86 6 1242 795 36 9 26 chr11 86235798 86235912 -35607944 + B1_Mus2 SINE Alu 1 112 -35 6 1242 566 143 0 105 chr11 86235800 86235933 -35607923 + MT2B LTR ERVL 167 285 -316 6 1242 300 345 35 0 chr11 86235904 86236017 -35607839 + ID_B1 SINE B4 81 197 -27 6 1242 318 154 0 0 chr11 86236077 86236129 -35607727 + PB1D9 SINE Alu 48 99 -21 6 1242 1046 266 50 42 chr11 86236773 86236979 -35606877 + MTD LTR MaLR 1 209 -210 6 1242 1194 50 0 0 chr11 86236979 86237120 -35606736 + B1_Mm SINE Alu 1 141 -6 6 1242 1046 266 50 42 chr11 86237120 86237314 -35606542 + MTD LTR MaLR 210 404 -15 6 1242 493 236 0 0 chr11 86238042 86238148 -35605708 - ID_B1 SINE B4 -6 218 113 6 1242 917 298 74 110 chr11 86238266 86238746 -35605110 - L1MB2 LINE L1 -102 6069 5597 6 1242 385 305 51 13 chr11 86238746 86238902 -35604954 - RSINE1 SINE B4 0 165 4 6 1242 917 293 47 112 chr11 86238902 86239266 -35604590 - L1MB2 LINE L1 -575 5596 5254 6 1242 843 191 0 0 chr11 86239266 86239413 -35604443 + B1_Mus2 SINE Alu 1 147 0 6 1242 354 267 56 97 chr11 86239413 86239494 -35604362 - L1MB2 LINE L1 -887 5259 5175 6 1242 235 295 164 15 chr11 86239513 86239647 -35604209 - RSINE1 SINE B4 -10 155 2 6 1242 229 194 145 0 chr11 86239664 86239726 -35604130 - ID4 SINE ID -4 79 9 6 1242 320 280 32 56 chr11 86239744 86239869 -35603987 - L1MB2 LINE L1 -961 5185 5064 6 1242 1811 266 47 85 chr11 86239936 86240768 -35603088 - Lx7 LINE L1 0 7696 6757 6 1242 449 287 50 22 chr11 86240811 86240950 -35602906 - RSINE1 SINE B4 0 165 23 6 1242 268 100 0 0 chr11 86240988 86241028 -35602828 + B2_Mm2 SINE B2 2 41 -154 6 1242 825 10 0 0 chr11 86241028 86241132 -35602724 + B1_Mus2 SINE Alu 1 104 -43 6 1242 1229 71 0 0 chr11 86241133 86241301 -35602555 + B2_Mm2 SINE B2 27 194 -1 6 1242 1173 119 43 16 chr11 86241449 86241637 -35602219 - B2_Mm2 SINE B2 -2 193 1 6 1242 23 0 0 0 chr11 86241642 86241665 -35602191 + AT_rich Low_complexity Low_complexity 1 23 0 6 1242 542 181 76 57 chr11 86241670 86241814 -35602042 + B3 SINE B2 52 196 -20 6 1242 461 270 0 18 chr11 86241853 86241966 -35601890 + PB1D10 SINE Alu 7 117 0 6 1242 1174 48 7 0 chr11 86244093 86244239 -35599617 - B1_Mus1 SINE Alu 0 148 2 6 1242 954 215 25 5 chr11 86244261 86244462 -35599394 - B3 SINE B2 -10 206 2 6 1242 969 94 57 7 chr11 86244586 86244726 -35599130 + B1_Mus1 SINE Alu 1 147 -1 6 1242 321 222 43 22 chr11 86244755 86244847 -35599009 + L1M5 LINE L1 5351 5444 -718 6 155 413 216 0 29 chr11 86245264 86245402 -35598454 + CT-rich Low_complexity Low_complexity 3 136 0 6 1243 22 0 0 0 chr11 86246429 86246451 -35597405 + AT_rich Low_complexity Low_complexity 1 22 0 6 1243 2007 4 4 0 chr11 86246692 86246917 -35596939 + L1Md_A LINE L1 6357 6582 0 6 1243 367 286 62 9 chr11 86247131 86247244 -35596612 + PB1D9 SINE Alu 1 119 -1 6 1243 605 221 62 49 chr11 86247260 86247422 -35596434 + RSINE1 SINE B4 2 165 0 6 1243 207 100 0 0 chr11 86248101 86248131 -35595725 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 6 1243 26 0 0 0 chr11 86248262 86248288 -35595568 + AT_rich Low_complexity Low_complexity 1 26 0 6 1243 225 0 0 0 chr11 86248484 86248509 -35595347 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 6 1243 813 167 0 35 chr11 86248532 86248675 -35595181 - B1_Mur3 SINE Alu -11 138 1 6 1243 374 130 28 42 chr11 86248867 86248939 -35594917 + B1_Mur2 SINE Alu 78 148 -1 6 1243 309 113 19 0 chr11 86249361 86249414 -35594442 + PB1D9 SINE Alu 12 65 -55 6 1243 494 103 0 13 chr11 86249426 86249505 -35594351 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 6 1243 315 0 0 0 chr11 86249971 86250006 -35593850 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 6 1243 254 273 116 97 chr11 86250008 86250276 -35593580 + B4 SINE B4 2 274 -18 6 1243 243 0 0 0 chr11 86250319 86250346 -35593510 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1243 468 0 0 0 chr11 86250346 86250398 -35593458 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1243 570 257 43 21 chr11 86250426 86250584 -35593272 + B3A SINE B2 1 162 -36 6 1243 324 0 0 0 chr11 86250584 86250620 -35593236 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1243 570 257 43 21 chr11 86250620 86250648 -35593208 + B3A SINE B2 163 190 -8 6 1243 367 205 102 8 chr11 86250673 86250718 -35593138 - Lx9 LINE L1 -11 7633 7586 6 1243 189 0 0 0 chr11 86250718 86250739 -35593117 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1243 367 205 102 8 chr11 86250739 86250811 -35593045 - Lx9 LINE L1 -59 7585 7505 6 1243 582 191 9 0 chr11 86250812 86250917 -35592939 - U6 snRNA snRNA -1 106 1 6 1243 29 0 0 0 chr11 86250917 86250946 -35592910 + AT_rich Low_complexity Low_complexity 1 29 0 6 1243 448 258 7 42 chr11 86252067 86252190 -35591666 + PB1D10 SINE Alu 12 132 -18 6 1243 1076 77 13 0 chr11 86252380 86252535 -35591321 + B2_Mm1t SINE B2 23 179 -14 6 1243 593 266 0 8 chr11 86253029 86253158 -35590698 - RSINE1 SINE B4 -36 129 2 6 1243 975 154 0 0 chr11 86253188 86253357 -35590499 + T-rich Low_complexity Low_complexity 5 173 0 6 1243 490 103 23 0 chr11 86253358 86253445 -35590411 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 6 1243 344 316 91 42 chr11 86253464 86253728 -35590128 + B4A SINE B4 1 277 -15 6 1243 216 0 0 0 chr11 86253734 86253758 -35590098 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1243 180 0 0 0 chr11 86254154 86254174 -35589682 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1243 267 245 0 0 chr11 86254272 86254325 -35589531 - ERVL-E-int LTR ERVL -5094 573 521 6 1243 752 237 20 25 chr11 86254503 86254702 -35589154 + B3A SINE B2 1 198 0 6 1243 287 269 0 15 chr11 86255387 86255455 -35588401 + GA-rich Low_complexity Low_complexity 2 68 0 6 1243 569 175 1 1 chr11 86255799 86255909 -35587947 + B1_Mur4 SINE Alu 1 110 -10 6 1243 403 193 12 24 chr11 86255948 86256033 -35587823 + B1F SINE Alu 59 142 -7 6 1243 22 0 0 0 chr11 86256035 86256057 -35587799 + AT_rich Low_complexity Low_complexity 1 22 0 6 1243 534 179 116 0 chr11 86256472 86256584 -35587272 - ID_B1 SINE B4 0 224 100 6 1243 1140 117 62 28 chr11 86256585 86256796 -35587060 - MTC LTR MaLR -8 413 196 7 1243 198 0 0 0 chr11 86256796 86256818 -35587038 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1243 946 73 7 0 chr11 86256818 86256954 -35586902 - B1_Mus1 SINE Alu 0 148 12 7 1243 1125 161 28 0 chr11 86256953 86257170 -35586686 - MTC LTR MaLR -196 225 3 7 1243 288 0 0 0 chr11 86257242 86257274 -35586582 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1243 764 255 67 43 chr11 86257737 86257946 -35585910 + ID_B1 SINE B4 3 216 -8 7 1243 642 310 62 52 chr11 86259331 86259363 -35584493 - B4A SINE B4 0 292 270 7 1243 237 33 0 0 chr11 86259363 86259393 -35584463 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1243 642 310 62 52 chr11 86259393 86259649 -35584207 - B4A SINE B4 -23 269 1 7 1243 562 265 7 0 chr11 86259727 86259863 -35583993 + ID_B1 SINE B4 87 223 -1 7 1243 643 45 11 0 chr11 86259917 86260005 -35583851 + B1_Mus2 SINE Alu 59 147 0 7 1243 312 91 0 0 chr11 86260009 86260053 -35583803 + (GAA)n Simple_repeat Simple_repeat 2 45 0 7 1243 1456 55 38 0 chr11 86260079 86260262 -35583594 + B2_Mm2 SINE B2 1 190 -5 7 1243 938 162 86 5 chr11 86260271 86260469 -35583387 - B3 SINE B2 -2 214 1 7 1243 481 306 49 0 chr11 86260660 86260804 -35583052 + RSINE1 SINE B4 2 152 -13 7 1243 375 23 0 0 chr11 86260835 86260879 -35582977 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1243 25 0 0 0 chr11 86260902 86260927 -35582929 + AT_rich Low_complexity Low_complexity 1 25 0 7 1243 312 253 77 0 chr11 86261168 86261259 -35582597 - B1F SINE Alu -43 106 9 7 1243 1103 217 151 6 chr11 86261261 86261585 -35582271 + MTE2b LTR MaLR 9 379 0 7 1243 24 53 0 0 chr11 86261764 86261802 -35582054 + AT_rich Low_complexity Low_complexity 1 38 0 7 1243 581 238 6 75 chr11 86262047 86262206 -35581650 + RSINE1 SINE B4 18 165 0 7 1243 562 278 7 7 chr11 86262218 86262363 -35581493 + B1_Mur1 SINE Alu 1 145 -4 7 1243 416 273 0 20 chr11 86262643 86262744 -35581112 + PB1 SINE Alu 3 101 -26 7 1243 529 265 46 33 chr11 86262750 86262902 -35580954 + B3A SINE B2 2 155 -43 7 1243 492 18 0 0 chr11 86262906 86262963 -35580893 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1243 373 352 23 79 chr11 86263044 86263120 -35580736 + B4A SINE B4 5 81 -211 7 1243 959 68 8 0 chr11 86263120 86263252 -35580604 + (GAAAA)n Simple_repeat Simple_repeat 2 134 0 7 1243 373 352 23 79 chr11 86263252 86263480 -35580376 + B4A SINE B4 82 292 0 7 1243 226 280 0 0 chr11 86263735 86263785 -35580071 + B1_Mur2 SINE Alu 72 121 -28 7 1243 393 238 252 8 chr11 86264424 86264553 -35579303 + MTEa LTR MaLR 1 161 -218 7 1243 2298 112 6 2 chr11 86264553 86264976 -35578880 - MTA_Mm LTR MaLR 0 400 1 7 1243 371 324 36 0 chr11 86264976 86265115 -35578741 - MTEa LTR MaLR -57 322 179 7 1243 325 98 336 17 chr11 86265139 86265252 -35578604 + B2_Mm2 SINE B2 47 195 0 7 1243 405 58 0 0 chr11 86265266 86265318 -35578538 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1243 989 90 0 40 chr11 86265540 86265691 -35578165 + B1_Mur3 SINE Alu 5 149 0 7 1243 198 71 0 0 chr11 86265692 86265720 -35578136 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1243 25 0 0 0 chr11 86265827 86265852 -35578004 + AT_rich Low_complexity Low_complexity 1 25 0 7 1243 200 263 0 0 chr11 86265852 86265909 -35577947 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1243 773 174 13 40 chr11 86266044 86266060 -35577796 - B1_Mur2 SINE Alu 0 149 137 7 1243 279 0 0 0 chr11 86266060 86266091 -35577765 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1243 773 174 13 40 chr11 86266091 86266224 -35577632 - B1_Mur2 SINE Alu -13 136 4 7 1243 558 310 30 0 chr11 86267257 86267454 -35576402 + ID_B1 SINE B4 21 223 -1 7 1243 464 167 11 32 chr11 86267473 86267566 -35576290 + PB1D9 SINE Alu 30 120 0 7 1243 1655 36 0 0 chr11 86267891 86268083 -35575773 + B2_Mm1a SINE B2 2 193 0 7 1243 922 208 56 14 chr11 86268098 86268313 -35575543 + B4A SINE B4 1 224 -68 7 1243 623 196 74 15 chr11 86268345 86268480 -35575376 + B1_Mur1 SINE Alu 5 147 -2 7 1243 441 0 0 0 chr11 86268695 86268744 -35575112 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1243 361 194 56 0 chr11 86268744 86268816 -35575040 - B1_Mur4 SINE Alu -61 89 14 7 1243 1299 47 0 0 chr11 86268823 86268994 -35574862 + (TCTA)n Simple_repeat Simple_repeat 3 173 0 7 1243 465 269 69 8 chr11 86269047 86269178 -35574678 - RSINE1 SINE B4 -24 141 3 7 1243 503 210 41 32 chr11 86269547 86269670 -35574186 - MT2A LTR ERVL -316 217 94 7 1243 663 212 0 29 chr11 86269666 86269802 -35574054 - MT2A LTR ERVL -401 132 1 7 1243 517 186 93 0 chr11 86269899 86270017 -35573839 + B1_Mur2 SINE Alu 21 149 0 7 1243 350 246 21 42 chr11 86270099 86270243 -35573613 + (CAGAGA)n Simple_repeat Simple_repeat 4 144 0 7 1243 570 29 0 0 chr11 86270834 86270902 -35572954 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1243 333 0 0 0 chr11 86271454 86271491 -35572365 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 7 1243 660 176 55 16 chr11 86271491 86271618 -35572238 - B1_Mur2 SINE Alu -14 135 4 7 1243 267 252 67 19 chr11 86271988 86272093 -35571763 - Lx9 LINE L1 -190 7454 7345 7 1243 432 0 0 0 chr11 86272197 86272245 -35571611 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 7 1243 948 106 24 24 chr11 86272247 86272411 -35571445 - B2_Mm2 SINE B2 -31 164 1 7 1243 570 291 36 62 chr11 86272422 86272784 -35571072 - RLTR12B LTR ERVK -210 318 1 7 1243 761 268 53 18 chr11 86272826 86273054 -35570802 - Lx9 LINE L1 -354 7290 7055 7 1243 1858 57 0 0 chr11 86273058 86273294 -35570562 + RMER17A LTR ERVK 1 236 -515 7 1243 1930 182 80 114 chr11 86273294 86273777 -35570079 + RMER16 LTR ERVK 1 474 -59 7 1243 1196 35 14 0 chr11 86273777 86273921 -35569935 - B1_Mus2 SINE Alu 0 147 2 7 1243 1930 182 80 114 chr11 86273921 86273989 -35569867 + RMER16 LTR ERVK 475 533 0 7 1243 2618 107 30 65 chr11 86273989 86274529 -35569327 + RMER17A LTR ERVK 231 751 0 7 1243 336 228 43 11 chr11 86274542 86274635 -35569221 - Lx9 LINE L1 -594 7050 6955 7 1243 3599 95 4 2 chr11 86274651 86275178 -35568678 + RMER2 LTR ERV1 14 541 -26 7 1243 3189 220 18 15 chr11 86275188 86275865 -35567991 - Lx9 LINE L1 -660 6984 6306 7 1243 950 194 94 25 chr11 86275946 86276147 -35567709 - B3 SINE B2 0 216 2 7 1243 588 156 18 9 chr11 86276261 86276371 -35567485 + B3 SINE B2 106 216 0 7 1243 635 160 0 0 chr11 86276452 86276558 -35567298 + B1_Mur1 SINE Alu 44 149 0 7 1243 389 294 65 7 chr11 86276571 86276725 -35567131 + B3A SINE B2 1 163 -35 7 1243 1625 37 0 0 chr11 86277208 86277397 -35566459 - B2_Mm1a SINE B2 -4 189 1 7 1243 552 54 484 0 chr11 86277624 86277717 -35566139 + B1_Mus2 SINE Alu 1 138 -9 7 1243 306 0 0 0 chr11 86277717 86277751 -35566105 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1243 1242 62 0 0 chr11 86277751 86277897 -35565959 + B1_Mus2 SINE Alu 2 147 0 7 1243 1366 93 10 10 chr11 86278215 86278410 -35565446 - B2_Mm2 SINE B2 0 195 1 7 1243 425 202 139 104 chr11 86278433 86278577 -35565279 - B1F1 SINE Alu 0 149 1 7 1243 668 261 138 6 chr11 86278577 86278641 -35565215 - ID_B1 SINE B4 -129 95 8 7 1243 574 185 68 125 chr11 86278661 86278686 -35565170 - B2_Mm2 SINE B2 -10 185 163 7 1243 309 26 0 0 chr11 86278686 86278724 -35565132 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1243 799 185 68 125 chr11 86278724 86278799 -35565057 - B3A SINE B2 -33 165 94 7 1243 3366 128 26 34 chr11 86278799 86279302 -35564554 - RLTR19 LTR ERVK 0 499 1 7 1243 799 218 31 37 chr11 86279302 86279392 -35564464 - B3A SINE B2 -103 95 5 7 1243 965 122 7 39 chr11 86279633 86279786 -35564070 - B1_Mur4 SINE Alu -1 149 2 7 1243 594 37 24 0 chr11 86279826 86279908 -35563948 + L1Md_F3 LINE L1 6498 6581 -3 7 1243 30 0 0 0 chr11 86280219 86280249 -35563607 + AT_rich Low_complexity Low_complexity 1 30 0 7 1243 429 70 0 0 chr11 86280530 86280587 -35563269 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1243 587 255 14 7 chr11 86280599 86280741 -35563115 - RSINE1 SINE B4 -22 143 1 7 1243 273 146 0 0 chr11 86281014 86281062 -35562794 + (TCC)n Simple_repeat Simple_repeat 2 49 0 7 1243 516 263 0 0 chr11 86281064 86281163 -35562693 - PB1D9 SINE Alu -21 99 1 7 1243 494 298 89 6 chr11 86281202 86281371 -35562485 + ID_B1 SINE B4 1 183 -41 7 1243 241 196 20 0 chr11 86281467 86281518 -35562338 + BC1_Mm scRNA scRNA 19 70 -82 7 1243 279 239 15 0 chr11 86282132 86282199 -35561657 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1243 539 269 137 63 chr11 86282202 86282472 -35561384 - B4A SINE B4 -1 291 2 7 1243 1022 318 13 24 chr11 86282472 86282849 -35561007 + MTEa LTR MaLR 1 373 -6 7 1243 1259 116 12 0 chr11 86283145 86283317 -35560539 + B2_Mm1t SINE B2 1 174 -19 7 1243 317 89 500 0 chr11 86283373 86283463 -35560393 + B2_Mm2 SINE B2 47 181 -14 7 1243 420 288 68 6 chr11 86283477 86283638 -35560218 - MER33 DNA MER1_type -94 230 60 7 1243 182 208 21 0 chr11 86283767 86283815 -35560041 + GA-rich Low_complexity Low_complexity 4 52 0 7 1243 250 254 62 16 chr11 86283824 86283888 -35559968 + ID4_ SINE ID 16 82 -1 7 1243 243 0 0 0 chr11 86283947 86283974 -35559882 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1243 1210 43 0 0 chr11 86283974 86284112 -35559744 - B1_Mus2 SINE Alu -9 138 1 7 1243 1199 68 0 0 chr11 86284251 86284398 -35559458 - B1_Mus1 SINE Alu 0 148 2 7 1243 479 279 49 0 chr11 86284780 86284902 -35558954 + ID_B1 SINE B4 84 211 -13 7 1243 233 255 18 146 chr11 86285045 86285155 -35558701 - B1_Mm SINE Alu -43 104 9 7 1243 570 202 0 37 chr11 86285584 86285692 -35558164 + PB1D10 SINE Alu 12 115 -2 7 1243 1515 69 16 0 chr11 86285692 86285880 -35557976 + B2_Mm1t SINE B2 2 192 -1 7 1243 720 284 127 22 chr11 86285882 86286332 -35557524 + L1MB7 LINE L1 5662 6158 -26 7 1243 608 216 0 11 chr11 86287429 86287984 -35555872 + (CA)n Simple_repeat Simple_repeat 1 548 0 8 1243 924 151 220 28 chr11 86288090 86288267 -35555589 - B3 SINE B2 -4 212 2 8 1243 497 216 0 20 chr11 86288373 86288472 -35555384 + B1_Mur2 SINE Alu 41 137 -12 8 1243 276 77 0 0 chr11 86288472 86288511 -35555345 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 8 1243 212 366 52 26 chr11 86288519 86288634 -35555222 + B1F SINE Alu 1 118 -31 8 1243 1692 182 148 83 chr11 86289261 86289680 -35554176 - RLTR41 LTR ERV1 0 446 1 8 1243 259 239 119 0 chr11 86289880 86289947 -35553909 - B4A SINE B4 -164 128 54 8 1243 479 297 7 33 chr11 86290048 86290198 -35553658 - B1F SINE Alu -2 147 2 8 1243 210 37 0 0 chr11 86290198 86290225 -35553631 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 1243 467 229 36 18 chr11 86290232 86290343 -35553513 - PB1D10 SINE Alu 0 117 5 8 1243 463 282 27 47 chr11 86290371 86290520 -35553336 + B1F2 SINE Alu 2 147 -2 8 1243 579 240 40 0 chr11 86290520 86290645 -35553211 + RSINE1 SINE B4 3 132 -33 8 1243 347 243 0 0 chr11 86290722 86290790 -35553066 + RSINE1 SINE B4 2 69 -96 8 1243 499 247 167 40 chr11 86290790 86290988 -35552868 - MTD LTR MaLR 0 419 197 8 1243 816 179 38 0 chr11 86291032 86291210 -35552646 - B2_Mm2 SINE B2 -15 201 2 8 1243 789 180 12 0 chr11 86291240 86291393 -35552463 - B3 SINE B2 -33 165 1 8 1243 313 243 21 112 chr11 86291393 86291569 -35552287 - MTD LTR MaLR -218 201 1 8 1243 274 326 43 85 chr11 86291569 86291663 -35552193 + RSINE1 SINE B4 68 157 -8 8 1243 210 179 26 0 chr11 86291667 86291706 -35552150 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 8 1243 2594 48 27 0 chr11 86291706 86292038 -35551818 + ORR1A1 LTR MaLR 1 341 -5 8 1243 219 69 0 0 chr11 86292038 86292067 -35551789 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 8 1243 1340 41 0 0 chr11 86292083 86292230 -35551626 + B1_Mm SINE Alu 1 147 0 8 1243 202 132 0 26 chr11 86292246 86292285 -35551571 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 8 1243 814 87 226 0 chr11 86292289 86292404 -35551452 + B1_Mur4 SINE Alu 1 141 -9 8 1243 323 60 20 0 chr11 86292404 86292454 -35551402 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 8 1243 652 253 29 58 chr11 86292484 86292656 -35551200 + B3A SINE B2 2 168 -48 8 1243 643 249 28 50 chr11 86293102 86293175 -35550681 + MT2A LTR ERVL 5 72 -461 8 1243 441 0 0 0 chr11 86293184 86293233 -35550623 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 8 1243 1019 61 91 0 chr11 86293233 86293355 -35550501 - B1_Mm SINE Alu -10 137 4 8 1243 643 249 28 50 chr11 86293355 86293463 -35550393 + MT2A LTR ERVL 73 182 -351 8 1243 1145 89 0 6 chr11 86293468 86293626 -35550230 + B2_Mm2 SINE B2 15 171 -24 8 1243 991 174 13 96 chr11 86293636 86293865 -35549991 + MT2A LTR ERVL 172 381 -152 8 1243 569 84 10 50 chr11 86293811 86293911 -35549945 + B2_Mm2 SINE B2 94 189 -6 8 1243 1453 85 0 16 chr11 86293916 86294107 -35549749 + B2_Mm2 SINE B2 1 188 -7 8 1243 898 150 247 6 chr11 86294374 86294548 -35549308 + B3 SINE B2 1 216 0 8 1243 270 81 0 0 chr11 86294714 86294751 -35549105 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 8 1243 1188 92 0 0 chr11 86294751 86294915 -35548941 - B2_Mm2 SINE B2 -31 164 1 8 1243 357 205 48 12 chr11 86295230 86295314 -35548542 - PB1D10 SINE Alu -13 104 18 8 1243 342 238 33 104 chr11 86295354 86295537 -35548319 - Lx8 LINE L1 -1 7472 7303 8 1243 1245 218 241 12 chr11 86295584 86296007 -35547849 - Lx8 LINE L1 -378 7095 6576 8 1243 1188 112 25 60 chr11 86296228 86296428 -35547428 + B2_Mm2 SINE B2 1 193 -2 8 1243 1783 31 0 0 chr11 86296568 86296761 -35547095 + B2_Mm1t SINE B2 1 193 0 8 1243 420 301 11 0 chr11 86296761 86296854 -35547002 - PB1D7 SINE Alu -17 103 10 8 1243 247 322 24 47 chr11 86296915 86297042 -35546814 + RSINE1 SINE B4 40 163 -2 8 1243 22 0 0 0 chr11 86298163 86298185 -35545671 + GC_rich Low_complexity Low_complexity 1 22 0 8 1243 428 236 164 0 chr11 86299071 86299181 -35544675 - RSINE1 SINE B4 -35 130 3 8 1243 1195 54 0 75 chr11 86300406 86300565 -35543291 - B1_Mus2 SINE Alu 0 147 1 8 1243 685 197 53 0 chr11 86300851 86300983 -35542873 - B1_Mur1 SINE Alu -9 140 2 8 1243 739 245 0 7 chr11 86301177 86301325 -35542531 + B1F SINE Alu 3 149 0 8 1243 1491 71 60 0 chr11 86301435 86301618 -35542238 - B2_Mm2 SINE B2 0 195 2 8 1243 1493 89 11 0 chr11 86301691 86301881 -35541975 + B2_Mm1t SINE B2 2 193 0 8 1243 48 0 0 0 chr11 86302024 86302072 -35541784 + AT_rich Low_complexity Low_complexity 1 48 0 8 1243 22 0 0 0 chr11 86302176 86302198 -35541658 + AT_rich Low_complexity Low_complexity 1 22 0 8 1243 865 139 21 28 chr11 86302209 86302350 -35541506 - B1_Mur2 SINE Alu -9 140 1 8 1243 21 0 0 0 chr11 86302501 86302522 -35541334 + AT_rich Low_complexity Low_complexity 1 21 0 8 1243 305 197 16 16 chr11 86302950 86303012 -35540844 + L2c LINE L2 3326 3387 0 8 1243 514 175 57 19 chr11 86303036 86303141 -35540715 - PB1D10 SINE Alu 0 117 9 8 1243 371 233 67 19 chr11 86303053 86303158 -35540698 - ID_B1 SINE B4 -45 179 70 8 1243 337 191 29 0 chr11 86303370 86303438 -35540418 + B3A SINE B2 104 173 -25 8 1243 591 195 98 0 chr11 86304099 86304222 -35539634 - B3 SINE B2 -76 140 6 8 1243 242 324 216 0 chr11 86304421 86304523 -35539333 - B1F SINE Alu -25 124 1 8 1243 275 212 163 12 chr11 86305499 86305585 -35538271 + PB1D10 SINE Alu 16 114 -3 8 1243 325 133 0 104 chr11 86305935 86306002 -35537854 - B1_Mur2 SINE Alu -7 142 83 8 1243 656 172 102 0 chr11 86306009 86306137 -35537719 - B1_Mus2 SINE Alu -2 145 5 8 1243 806 36 52 35 chr11 86306314 86306430 -35537426 - B1_Mus2 SINE Alu -21 126 9 8 1243 287 182 174 12 chr11 86307461 86307622 -35536234 - RMER17C LTR ERVK -133 277 91 8 1243 640 167 151 0 chr11 86307685 86307811 -35536045 + B1_Mur3 SINE Alu 5 149 0 8 1243 1491 83 0 0 chr11 86307861 86308054 -35535802 + L1Md_F2 LINE L1 6390 6582 0 8 1243 362 184 77 26 chr11 86308162 86308240 -35535616 + ID4_ SINE ID 2 83 0 8 1243 253 200 162 44 chr11 86308608 86308624 -35535232 - ID4_ SINE ID 0 83 8 8 1243 256 173 211 0 chr11 86308624 86308676 -35535180 - tRNA-Ala-GCG tRNA tRNA -11 64 2 8 1243 189 0 0 0 chr11 86310604 86310625 -35533231 + (CCA)n Simple_repeat Simple_repeat 2 22 0 8 1243 610 206 19 36 chr11 86311193 86311352 -35532504 + B1_Mus1 SINE Alu 25 147 -2 8 1243 791 149 151 22 chr11 86311514 86311699 -35532157 + B3 SINE B2 2 210 -6 8 1243 679 222 27 40 chr11 86311799 86311949 -35531907 - B1_Mur3 SINE Alu 0 149 2 8 1243 759 185 91 48 chr11 86314310 86314497 -35529359 - B2_Mm2 SINE B2 0 195 1 8 1243 26 0 0 0 chr11 86315664 86315690 -35528166 + AT_rich Low_complexity Low_complexity 1 26 0 8 1243 1350 14 0 13 chr11 86317282 86317431 -35526425 + B1_Mm SINE Alu 1 147 0 8 1243 180 0 0 0 chr11 86317431 86317451 -35526405 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1243 845 258 79 83 chr11 86317451 86317717 -35526139 + B4 SINE B4 27 291 -1 8 1243 1021 155 0 20 chr11 86318013 86318164 -35525692 - B1_Mur3 SINE Alu 0 149 2 8 1243 23 0 0 0 chr11 86318164 86318187 -35525669 + AT_rich Low_complexity Low_complexity 1 23 0 8 1243 497 282 42 73 chr11 86318487 86318678 -35525178 - B3A SINE B2 0 198 14 8 1243 25 51 0 0 chr11 86318998 86319037 -35524819 + AT_rich Low_complexity Low_complexity 1 39 0 8 1243 245 308 15 0 chr11 86319138 86319203 -35524653 - tRNA-Ala-GCA tRNA tRNA -8 67 2 8 1243 926 236 85 137 chr11 86319372 86319819 -35524037 + RMER4B LTR ERVK 15 451 -134 8 1243 180 0 0 0 chr11 86319841 86319861 -35523995 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1243 547 165 82 10 chr11 86319876 86319974 -35523882 - B1_Mus1 SINE Alu -41 107 3 8 1243 794 162 40 7 chr11 86320600 86320749 -35523107 - B3 SINE B2 0 216 63 8 1243 306 183 12 145 chr11 86320783 86320866 -35522990 - ID2 SINE ID -6 77 6 8 1243 529 260 77 0 chr11 86321390 86321494 -35522362 + ID_B1 SINE B4 84 195 -29 8 1243 656 191 185 0 chr11 86321640 86321797 -35522059 + B2_Mm2 SINE B2 3 188 -7 8 1243 314 298 91 0 chr11 86321808 86321929 -35521927 + L1MC5 LINE L1 6971 7102 -859 8 1243 877 228 97 15 chr11 86322048 86322244 -35521612 - B3 SINE B2 -4 212 1 8 1243 937 205 4 173 chr11 86322571 86322819 -35521037 + B3 SINE B2 2 207 -9 8 1243 1435 71 43 0 chr11 86323039 86323223 -35520633 + B2_Mm2 SINE B2 2 193 -2 8 1243 808 229 36 6 chr11 86323330 86323497 -35520359 - B3 SINE B2 -44 172 1 8 1243 1930 150 64 19 chr11 86323540 86323852 -35520004 + ORR1A4 LTR MaLR 1 326 -3 8 1243 403 288 31 39 chr11 86323969 86324099 -35519757 + MLT1C LTR MaLR 3 131 -336 8 1243 307 236 83 0 chr11 86324150 86324222 -35519634 + ID4_ SINE ID 2 79 -4 8 1243 2068 210 186 70 chr11 86324233 86324979 -35518877 + RMER17B LTR ERVK 1 833 -125 8 1243 843 265 99 36 chr11 86325616 86325918 -35517938 + Lx8 LINE L1 7148 7468 -5 8 1243 640 153 200 8 chr11 86325934 86326059 -35517797 + B1_Mur2 SINE Alu 1 149 0 8 1243 248 231 13 13 chr11 86326077 86326156 -35517700 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 1243 192 77 0 0 chr11 86326180 86326206 -35517650 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1243 201 257 104 39 chr11 86326241 86326318 -35517538 - L3 LINE CR1 -3047 1442 1361 9 1243 613 207 171 11 chr11 86327901 86328082 -35515774 - B3 SINE B2 -6 210 1 9 1243 322 332 45 18 chr11 86328091 86328229 -35515627 - B1F1 SINE Alu -7 142 2 9 1243 800 225 128 0 chr11 86328559 86328746 -35515110 - B3 SINE B2 -5 211 1 9 1243 492 247 26 6 chr11 86329156 86329274 -35514582 + PB1D10 SINE Alu 1 116 -1 9 1243 372 254 112 106 chr11 86331551 86331653 -35512203 + L1MC4 LINE L1 6981 7086 -956 9 1243 1647 51 0 15 chr11 86331653 86331851 -35512005 - B2_Mm2 SINE B2 0 195 1 9 1243 372 254 112 106 chr11 86331851 86332070 -35511786 + L1MC4 LINE L1 7087 7304 -738 9 1243 480 266 177 26 chr11 86332081 86332313 -35511543 + L1MC4 LINE L1 7361 7627 -415 9 1243 239 256 122 0 chr11 86332314 86332404 -35511452 + L1MC4 LINE L1 7753 7853 -189 9 1243 729 174 120 8 chr11 86332694 86332827 -35511029 + B1_Mur2 SINE Alu 2 149 0 9 1243 409 292 88 0 chr11 86332882 86333019 -35510837 + B1F SINE Alu 1 149 0 9 1243 391 362 16 16 chr11 86334375 86334504 -35509352 + ID_B1 SINE B4 80 208 -16 9 1243 422 114 0 14 chr11 86334504 86334575 -35509281 + (TAA)n Simple_repeat Simple_repeat 3 72 0 9 1243 273 275 104 52 chr11 86335286 86335401 -35508455 + ID_B1 SINE B4 81 201 -23 9 1243 502 178 186 0 chr11 86335299 86335417 -35508439 + B1_Mur4 SINE Alu 11 150 0 9 1243 613 291 51 28 chr11 86335501 86335717 -35508139 + ID_B1 SINE B4 2 222 -2 9 1243 244 303 13 13 chr11 86335960 86336037 -35507819 - PB1 SINE Alu -7 120 44 9 1243 579 240 92 62 chr11 86336098 86336293 -35507563 - ID_B1 SINE B4 -19 205 5 9 1243 703 162 86 29 chr11 86336439 86336579 -35507277 + B1_Mur3 SINE Alu 2 149 0 9 1243 282 274 34 94 chr11 86336579 86336696 -35507160 - B3A SINE B2 -3 195 86 9 1243 997 88 0 0 chr11 86336777 86336914 -35506942 + B1_Mus2 SINE Alu 11 147 0 9 1243 234 163 0 0 chr11 86336952 86337001 -35506855 + B3 SINE B2 162 210 -6 9 1243 656 172 62 15 chr11 86337053 86337183 -35506673 + B3 SINE B2 2 137 -79 9 1243 598 302 57 57 chr11 86337234 86337480 -35506376 + B4A SINE B4 5 250 -42 9 1243 703 216 0 0 chr11 86337486 86337620 -35506236 + B1_Mur1 SINE Alu 3 136 -13 9 1243 24 32 0 0 chr11 86337620 86337651 -35506205 + AT_rich Low_complexity Low_complexity 1 31 0 9 1243 1391 111 16 0 chr11 86337657 86337847 -35506009 + B2_Mm2 SINE B2 3 195 0 9 1243 561 181 278 40 chr11 86337878 86338051 -35505805 + B3 SINE B2 3 216 0 9 1243 504 0 0 0 chr11 86338282 86338338 -35505518 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1243 285 333 0 0 chr11 86338520 86338610 -35505246 + PB1D10 SINE Alu 1 90 -27 9 1243 225 0 0 0 chr11 86339562 86339587 -35504269 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1243 273 29 0 0 chr11 86339611 86339645 -35504211 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 9 1243 1667 57 0 0 chr11 86340167 86340376 -35503480 + L1Md_T LINE L1 6374 6582 0 9 1243 482 187 187 0 chr11 86340462 86340569 -35503287 + RSINE1 SINE B4 3 129 -36 9 1243 31 0 0 0 chr11 86340583 86340614 -35503242 + AT_rich Low_complexity Low_complexity 1 31 0 9 1243 621 234 7 28 chr11 86340675 86340820 -35503036 - B1_Mur2 SINE Alu -6 143 2 9 1243 384 245 37 47 chr11 86341221 86341328 -35502528 + RSINE1 SINE B4 15 120 -45 9 1243 715 124 76 23 chr11 86341325 86341457 -35502399 + B1_Mm SINE Alu 9 147 0 9 1243 247 310 11 127 chr11 86341827 86341860 -35501996 + ID_B1 SINE B4 65 193 -31 9 1243 479 238 28 84 chr11 86341860 86342002 -35501854 + B1_Mur1 SINE Alu 16 149 0 9 1243 297 0 0 0 chr11 86342070 86342103 -35501753 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 9 1243 872 68 97 8 chr11 86342116 86342250 -35501606 - B1_Mm SINE Alu 0 147 2 9 1243 967 123 0 27 chr11 86342300 86342450 -35501406 + B1_Mus1 SINE Alu 3 148 0 9 1243 914 65 0 0 chr11 86342475 86342598 -35501258 + B1_Mus2 SINE Alu 25 147 0 9 1243 828 211 97 0 chr11 86342631 86342816 -35501040 - B3 SINE B2 -8 208 6 9 1243 248 189 0 0 chr11 86342982 86343035 -35500821 + B1_Mur1 SINE Alu 97 149 0 9 1243 842 182 193 0 chr11 86343148 86343329 -35500527 + B3 SINE B2 1 216 0 9 1243 694 188 202 17 chr11 86343383 86343556 -35500300 + B3 SINE B2 1 205 -11 9 1243 368 220 88 0 chr11 86343605 86343696 -35500160 + PB1D9 SINE Alu 21 119 -1 9 1243 992 185 56 0 chr11 86343766 86343961 -35499895 + B3 SINE B2 2 207 -9 9 1243 207 204 0 0 chr11 86343982 86344031 -35499825 + GA-rich Low_complexity Low_complexity 1 49 0 9 1243 396 208 187 9 chr11 86344412 86344519 -35499337 + B1_Mur1 SINE Alu 13 138 -11 9 1243 606 282 84 69 chr11 86344600 86344874 -35498982 + B4 SINE B4 3 280 -12 9 1243 324 247 90 0 chr11 86345163 86345252 -35498604 + PB1D10 SINE Alu 10 106 -11 9 1243 285 247 151 0 chr11 86345480 86345573 -35498283 + PB1D10 SINE Alu 1 107 -10 9 1243 183 42 0 0 chr11 86345573 86345597 -35498259 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1243 285 128 0 0 chr11 86345902 86345949 -35497907 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 9 1243 1272 44 0 0 chr11 86345949 86346109 -35497747 - B2_Mm1t SINE B2 -33 160 1 9 1243 1228 48 0 0 chr11 86346828 86346975 -35496881 + B1_Mm SINE Alu 1 147 0 9 1243 1233 119 16 5 chr11 86347909 86348095 -35495761 + B2_Mm2 SINE B2 2 189 -6 9 1243 413 241 64 9 chr11 86348270 86348379 -35495477 - B1F SINE Alu -32 117 3 9 1243 273 183 41 27 chr11 86349500 86349573 -35494283 + L1M4 LINE L1 4334 4407 -1739 9 1243 478 202 89 27 chr11 86349590 86349702 -35494154 + PB1D9 SINE Alu 2 120 0 9 1243 997 39 102 0 chr11 86349713 86349840 -35494016 + B1_Mus2 SINE Alu 1 140 -7 9 1243 180 0 0 0 chr11 86349854 86349874 -35493982 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 9 1243 613 269 24 68 chr11 86349902 86350109 -35493747 + B3A SINE B2 1 198 0 9 1243 475 297 0 0 chr11 86350141 86350269 -35493587 + B1F1 SINE Alu 5 132 -17 9 1243 186 43 0 0 chr11 86350271 86350294 -35493562 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 9 1243 180 0 0 0 chr11 86350547 86350567 -35493289 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1243 231 214 53 18 chr11 86350738 86350795 -35493061 + GA-rich Low_complexity Low_complexity 3 61 0 9 1243 1572 27 43 0 chr11 86350804 86350988 -35492868 + B2_Mm1a SINE B2 1 192 -1 9 1243 278 198 38 4 chr11 86350988 86351066 -35492790 + L1M4 LINE L1 5522 5605 -579 9 1243 700 253 87 11 chr11 86351083 86351267 -35492589 + B3 SINE B2 11 208 -8 9 1243 754 144 0 0 chr11 86351302 86351434 -35492422 + B1_Mur2 SINE Alu 17 148 -1 9 1243 834 201 105 11 chr11 86351466 86351657 -35492199 + B3 SINE B2 2 210 -6 9 1243 697 185 13 52 chr11 86351669 86351823 -35492033 + B1_Mur1 SINE Alu 1 148 -1 9 1243 856 65 194 0 chr11 86351836 86351960 -35491896 + B1_Mus1 SINE Alu 1 148 0 9 1243 1409 70 32 0 chr11 86351967 86352152 -35491704 + B2_Mm1t SINE B2 1 191 -2 9 1243 25 51 0 0 chr11 86352263 86352302 -35491554 + AT_rich Low_complexity Low_complexity 1 39 0 9 1243 1214 62 0 0 chr11 86352667 86352813 -35491043 + B1_Mus2 SINE Alu 2 147 0 9 1243 1436 81 16 0 chr11 86352842 86353028 -35490828 + B2_Mm2 SINE B2 1 189 -6 9 1243 939 124 0 0 chr11 86353052 86353189 -35490667 + B1_Mus1 SINE Alu 12 148 0 9 1243 404 229 131 19 chr11 86353558 86353665 -35490191 + PB1D7 SINE Alu 2 120 0 9 1243 827 215 6 47 chr11 86353694 86353865 -35489991 - RSINE1 SINE B4 0 165 2 9 1243 537 75 0 24 chr11 86353890 86353972 -35489884 - B2_Mm2 SINE B2 -46 149 70 9 1243 237 31 0 0 chr11 86353968 86354000 -35489856 - B3A SINE B2 -165 33 2 9 1243 400 248 158 9 chr11 86354026 86354140 -35489716 - B1_Mm SINE Alu -15 132 2 9 1243 1246 41 0 0 chr11 86354469 86354616 -35489240 + B1_Mus2 SINE Alu 1 147 0 9 1243 505 255 81 27 chr11 86355105 86355254 -35488602 + RSINE1 SINE B4 9 165 0 9 1243 306 0 0 0 chr11 86355283 86355317 -35488539 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 9 1243 459 236 142 0 chr11 86355348 86355475 -35488381 + RSINE1 SINE B4 2 146 -19 9 1243 351 272 39 0 chr11 86358780 86358883 -35484973 + MIR SINE MIR 56 162 -100 9 1243 432 244 25 16 chr11 86358991 86359112 -35484744 + B1F SINE Alu 26 147 -2 9 1243 656 182 71 21 chr11 86359187 86359327 -35484529 - B1_Mur2 SINE Alu 0 149 3 9 1243 713 174 98 0 chr11 86359354 86359486 -35484370 - B1_Mus2 SINE Alu 0 147 3 9 1243 321 26 0 0 chr11 86359724 86359762 -35484094 + (TC)n Simple_repeat Simple_repeat 2 39 0 9 1243 513 289 34 31 chr11 86360188 86360392 -35483464 + B4A SINE B4 2 208 -84 9 1243 1106 49 14 14 chr11 86360506 86360652 -35483204 - B1_Mus2 SINE Alu 0 147 2 9 1243 198 103 0 0 chr11 86360913 86360942 -35482914 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1243 904 193 84 25 chr11 86361008 86361210 -35482646 + B3 SINE B2 3 216 0 9 1243 644 198 0 8 chr11 86361211 86361333 -35482523 + B1F2 SINE Alu 29 149 0 9 1243 1486 69 11 0 chr11 86361371 86361560 -35482296 + B2_Mm1a SINE B2 2 192 -1 9 1243 596 195 26 9 chr11 86361808 86361922 -35481934 + PB1D9 SINE Alu 2 117 -3 9 1243 222 270 0 31 chr11 86361923 86361988 -35481868 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 1 1243 569 198 159 28 chr11 86362012 86362194 -35481662 - B3 SINE B2 -10 206 1 1 1243 4201 107 47 84 chr11 86362986 86363771 -35480085 - RMER6A LTR ERVK 0 756 1 1 1243 726 176 7 45 chr11 86363887 86363992 -35479864 + B1_Mur1 SINE Alu 1 106 -43 1 1243 1841 144 85 85 chr11 86363992 86364196 -35479660 - ORR1C1 LTR MaLR 0 378 148 1 1243 1551 57 16 0 chr11 86364196 86364388 -35479468 - B2_Mm2 SINE B2 0 195 1 1 1243 1841 144 85 85 chr11 86364388 86364561 -35479295 - ORR1C1 LTR MaLR -231 147 1 1 1243 726 176 7 45 chr11 86364561 86364610 -35479246 + B1_Mur1 SINE Alu 107 149 0 1 1243 738 211 0 45 chr11 86364628 86364782 -35479074 + B1_Mus1 SINE Alu 1 147 -1 1 1243 605 276 7 0 chr11 86364801 86364946 -35478910 + RSINE1 SINE B4 3 148 -17 1 1243 1725 26 0 0 chr11 86365000 86365193 -35478663 + B2_Mm1t SINE B2 1 193 0 1 1243 334 280 120 9 chr11 86365217 86365325 -35478531 + B1F2 SINE Alu 22 141 -8 1 1243 1549 52 21 0 chr11 86365384 86365575 -35478281 + B2_Mm2 SINE B2 1 195 0 1 1243 1207 68 0 0 chr11 86365600 86365746 -35478110 + B1_Mus2 SINE Alu 1 146 -1 1 1243 267 54 0 0 chr11 86365756 86365793 -35478063 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1243 243 308 182 0 chr11 86365794 86365881 -35477975 + ID_B1 SINE B4 1 146 -78 1 1243 246 143 61 0 chr11 86365881 86365930 -35477926 + PB1D10 SINE Alu 25 76 -41 1 1243 243 308 182 0 chr11 86365930 86365944 -35477912 + ID_B1 SINE B4 147 179 -45 1 1243 392 169 28 0 chr11 86365944 86366015 -35477841 + RSINE1 SINE B4 2 74 -91 1 1243 214 275 21 21 chr11 86366015 86366037 -35477819 + B3A SINE B2 1 93 -105 1 1243 22 0 0 0 chr11 86366072 86366094 -35477762 + AT_rich Low_complexity Low_complexity 1 22 0 1 1243 1395 86 27 0 chr11 86366533 86366720 -35477136 - B2_Mm2 SINE B2 -2 193 2 1 1243 913 208 61 5 chr11 86366740 86366938 -35476918 - B3 SINE B2 -7 209 1 1 1243 271 276 54 86 chr11 86367102 86367324 -35476532 - B3 SINE B2 0 216 2 1 1243 258 310 138 6 chr11 86367656 86367815 -35476041 + MIR SINE MIR 29 208 -54 1 1243 417 225 80 9 chr11 86367828 86367940 -35475916 + B1_Mur1 SINE Alu 5 124 -25 1 1243 342 219 144 48 chr11 86367940 86367953 -35475903 + ID_B1 SINE B4 86 222 -2 1 1243 1199 42 7 0 chr11 86368034 86368177 -35475679 + B1_Mm SINE Alu 4 147 0 1 1243 849 135 12 75 chr11 86368354 86368514 -35475342 - B1_Mur4 SINE Alu 0 150 1 1 1243 221 299 0 49 chr11 86369034 86369115 -35474741 + L2a LINE L2 3350 3426 0 1 1243 919 193 83 0 chr11 86369218 86369410 -35474446 + B3 SINE B2 2 209 -7 1 1243 606 197 0 0 chr11 86369422 86369549 -35474307 + GA-rich Low_complexity Low_complexity 2 128 0 1 1243 340 248 57 74 chr11 86370114 86370236 -35473620 - PB1 SINE Alu 0 127 8 1 1243 372 94 0 0 chr11 86370499 86370552 -35473304 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 1 1243 781 186 14 7 chr11 86370559 86370700 -35473156 - B1_Mur2 SINE Alu -5 144 3 1 1243 402 269 0 27 chr11 86370713 86370824 -35473032 - PB1D9 SINE Alu -8 112 5 1 1243 719 211 0 39 chr11 86370868 86371021 -35472835 + B1_Mur1 SINE Alu 3 149 0 1 1243 599 299 31 21 chr11 86371661 86371852 -35472004 + ID_B1 SINE B4 32 224 0 1 1243 551 233 17 0 chr11 86371865 86371985 -35471871 + RSINE1 SINE B4 42 163 -2 1 1243 880 119 15 0 chr11 86372032 86372166 -35471690 - B1_Mur4 SINE Alu -9 141 6 1 1243 1190 48 0 0 chr11 86372189 86372334 -35471522 - B1_Mus2 SINE Alu 0 147 3 1 1243 1094 180 80 0 chr11 86372427 86372627 -35471229 - B3 SINE B2 0 216 1 1 1243 243 0 0 0 chr11 86372855 86372882 -35470974 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1 1243 1016 73 0 0 chr11 86373220 86373356 -35470500 + B2_Mm2 SINE B2 2 137 -58 1 1243 703 153 24 8 chr11 86373950 86374075 -35469781 + B1_Mur2 SINE Alu 2 128 -21 1 1243 285 141 21 32 chr11 86374088 86374183 -35469673 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 1 1243 479 206 87 10 chr11 86374215 86374318 -35469538 + PB1D10 SINE Alu 1 111 -6 1 1243 216 97 0 0 chr11 86374320 86374351 -35469505 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1 1243 230 289 71 43 chr11 86374366 86374507 -35469349 + ID_B1 SINE B4 80 224 0 1 1243 293 222 200 18 chr11 86374398 86374508 -35469348 + B1F1 SINE Alu 19 148 -1 1 1243 205 86 0 28 chr11 86374511 86374547 -35469309 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1243 586 168 50 0 chr11 86375113 86375232 -35468624 + B1_Mur1 SINE Alu 23 147 -2 1 1243 866 177 0 0 chr11 86375245 86375392 -35468464 + B1_Mus2 SINE Alu 1 147 0 1 1243 303 121 0 0 chr11 86375412 86375470 -35468386 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 1 1243 469 242 54 52 chr11 86375612 86375821 -35468035 - ID_B1 SINE B4 0 292 92 1 1243 297 276 0 75 chr11 86375817 86375911 -35467945 - B4 SINE B4 -58 234 148 1 1243 304 314 9 71 chr11 86376012 86376125 -35467731 - RSINE1 SINE B4 -29 136 31 1 1243 446 272 2 53 chr11 86376234 86376399 -35467457 - B4A SINE B4 0 292 131 1 1244 662 112 0 61 chr11 86376704 86376818 -35467038 + B2_Mm2 SINE B2 1 107 -88 1 1244 1609 27 11 0 chr11 86377553 86377740 -35466116 - B2_Mm1a SINE B2 -3 190 2 1 1244 548 138 23 0 chr11 86377756 86377843 -35466013 - B1_Mus2 SINE Alu -17 130 42 1 1244 229 122 0 125 chr11 86377795 86377851 -35466005 - 4.5SRNA scRNA scRNA -8 86 38 1 1244 360 271 0 0 chr11 86377854 86378137 -35465719 + CT-rich Low_complexity Low_complexity 1 283 0 1 1244 360 258 0 0 chr11 86378190 86378368 -35465488 + CT-rich Low_complexity Low_complexity 2 179 0 1 1244 1024 138 101 50 chr11 86378434 86378633 -35465223 - B3 SINE B2 -7 209 1 1 1244 594 39 0 0 chr11 86378674 86378751 -35465105 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1244 1306 80 16 43 chr11 86378751 86378935 -35464921 - B2_Mm2 SINE B2 -15 180 2 1 1244 819 235 0 13 chr11 86378964 86379119 -35464737 - RSINE1 SINE B4 -10 155 3 1 1244 293 218 301 14 chr11 86379616 86379755 -35464101 - B3 SINE B2 -4 212 34 1 1244 283 280 0 0 chr11 86379802 86379877 -35463979 + ID4 SINE ID 1 75 -8 1 1244 472 223 30 37 chr11 86380694 86380829 -35463027 + ID_B1 SINE B4 80 213 -11 1 1244 1366 108 0 5 chr11 86380991 86381187 -35462669 + B2_Mm2 SINE B2 1 195 0 1 1244 509 110 12 0 chr11 86381477 86381559 -35462297 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1244 276 316 21 10 chr11 86381560 86381656 -35462200 - B3A SINE B2 -16 182 86 1 1244 334 168 82 3 chr11 86381723 86381807 -35462049 - PB1D7 SINE Alu 0 149 42 1 1244 1086 90 7 0 chr11 86381841 86381985 -35461871 - B1_Mus2 SINE Alu -1 146 2 1 1244 245 98 24 0 chr11 86382262 86382303 -35461553 + (GGGAGA)n Simple_repeat Simple_repeat 3 44 0 1 1244 352 273 16 55 chr11 86382323 86382451 -35461405 + ID_B1 SINE B4 93 215 -9 1 1244 419 267 122 7 chr11 86382462 86382609 -35461247 + RSINE1 SINE B4 2 165 0 1 1244 777 167 58 7 chr11 86382620 86382759 -35461097 - B1_Mur1 SINE Alu -3 146 1 1 1244 198 0 0 0 chr11 86382814 86382836 -35461020 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 1 1244 180 0 0 0 chr11 86382836 86382856 -35461000 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1 1244 689 163 30 15 chr11 86382856 86382978 -35460878 - B1_Mur4 SINE Alu -14 136 12 1 1244 219 36 0 0 chr11 86382983 86383011 -35460845 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 1 1244 759 184 7 49 chr11 86383011 86383154 -35460702 - B1_Mur4 SINE Alu -12 138 2 1 1244 693 158 26 52 chr11 86383384 86383538 -35460318 + B1_Mur4 SINE Alu 1 150 0 1 1244 189 0 0 0 chr11 86383701 86383722 -35460134 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1244 246 289 18 71 chr11 86384411 86384523 -35459333 + PB1 SINE Alu 22 127 0 1 1244 32 0 0 0 chr11 86385470 86385502 -35458354 + AT_rich Low_complexity Low_complexity 1 32 0 1 1244 182 98 0 47 chr11 86385780 86385791 -35458065 + (TTTG)n Simple_repeat Simple_repeat 3 12 0 1 1244 627 203 0 17 chr11 86385791 86385911 -35457945 - PB1D9 SINE Alu 0 120 3 1 1244 182 98 0 47 chr11 86385911 86385942 -35457914 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1 1244 1067 58 65 0 chr11 86385942 86386081 -35457775 - B1_Mus1 SINE Alu 0 148 1 1 1244 1010 134 17 34 chr11 86386252 86386430 -35457426 + B2_Mm2 SINE B2 2 176 -19 1 1244 326 250 0 40 chr11 86386712 86386787 -35457069 + ID4 SINE ID 12 83 0 1 1244 839 118 0 0 chr11 86386803 86386922 -35456934 - B1_Mus1 SINE Alu -29 119 1 1 1244 22 35 0 0 chr11 86386923 86386952 -35456904 + AT_rich Low_complexity Low_complexity 1 29 0 1 1244 283 176 219 29 chr11 86387161 86387266 -35456590 + B1_Mus1 SINE Alu 24 148 0 1 1244 211 191 42 56 chr11 86387607 86387679 -35456177 - B3 SINE B2 -145 71 1 1 1244 671 212 27 33 chr11 86387679 86387840 -35456016 + ID_B1 SINE B4 74 222 -2 1 1244 217 245 181 67 chr11 86387708 86387857 -35455999 + FAM SINE Alu 146 311 0 1 1244 924 248 19 0 chr11 86387868 86388078 -35455778 + ID_B1 SINE B4 3 216 -8 1 1244 458 308 8 0 chr11 86388085 86388205 -35455651 + RSINE1 SINE B4 4 124 -41 1 1244 610 226 149 41 chr11 86388233 86388427 -35455429 + B3 SINE B2 2 216 0 1 1244 211 313 60 0 chr11 86388644 86388711 -35455145 + ID4 SINE ID 1 71 -12 1 1244 463 202 0 11 chr11 86388837 86388927 -35454929 - RSINE1 SINE B4 -64 101 13 1 1244 682 239 57 0 chr11 86389020 86389196 -35454660 + B3 SINE B2 2 187 -29 1 1244 324 288 83 17 chr11 86389206 86389326 -35454530 - ID_B1 SINE B4 -93 131 4 1 1244 378 208 78 49 chr11 86389340 86389465 -35454391 - B1_Mur2 SINE Alu -2 147 2 1 1244 227 169 0 97 chr11 86389465 86389506 -35454350 - MT2B LTR ERVL -346 255 222 1 1244 383 250 10 42 chr11 86389473 86389569 -35454287 - PB1 SINE Alu -20 107 15 1 1244 257 161 161 0 chr11 86389752 86389808 -35454048 - ID_B1 SINE B4 -15 209 145 1 1244 305 272 227 20 chr11 86389806 86389956 -35453900 - B3A SINE B2 -1 197 17 1 1244 393 273 66 8 chr11 86389994 86390116 -35453740 - ID_B1 SINE B4 -89 135 7 1 1244 324 269 35 23 chr11 86390129 86390259 -35453597 - B3 SINE B2 -17 199 6 1 1244 393 167 25 13 chr11 86391303 86391382 -35452474 - B4A SINE B4 -211 81 2 1 1244 324 0 0 0 chr11 86391697 86391733 -35452123 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1244 311 228 120 0 chr11 86391735 86391827 -35452029 - PB1D10 SINE Alu -14 103 1 1 1244 360 271 62 0 chr11 86391986 86392091 -35451765 - PB1D9 SINE Alu 0 120 10 1 1244 198 0 0 0 chr11 86392100 86392122 -35451734 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1244 276 190 253 0 chr11 86392224 86392303 -35451553 + PB1D9 SINE Alu 14 112 -8 1 1244 209 263 51 26 chr11 86392666 86392744 -35451112 + MIR SINE MIR 163 242 -20 1 1244 233 292 10 92 chr11 86394495 86394518 -35449338 + MT2B LTR ERVL 144 158 -443 1 1244 594 154 91 0 chr11 86394518 86394628 -35449228 + B1_Mus2 SINE Alu 2 121 -26 1 1244 387 292 72 59 chr11 86394720 86394873 -35448983 - RSINE1 SINE B4 -7 158 4 1 1244 290 179 271 12 chr11 86395046 86395131 -35448725 - B1_Mus1 SINE Alu -41 107 1 1 1244 251 413 28 0 chr11 86395151 86395294 -35448562 + RSINE1 SINE B4 15 161 -4 1 1244 234 0 0 0 chr11 86395313 86395339 -35448517 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1244 301 313 146 6 chr11 86395677 86395841 -35448015 + B3A SINE B2 2 188 -10 1 1244 589 200 0 0 chr11 86395882 86395997 -35447859 + B1_Mus1 SINE Alu 26 140 -8 1 1244 1094 128 196 5 chr11 86396260 86396449 -35447407 - URR1B DNA MER1_type 0 225 1 1 1244 412 297 0 33 chr11 86397070 86397192 -35446664 + PB1D9 SINE Alu 1 118 -2 1 1244 216 97 0 0 chr11 86397194 86397225 -35446631 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1244 883 110 7 14 chr11 86399535 86399683 -35444173 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 1 1244 201 74 0 0 chr11 86400183 86400210 -35443646 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1244 416 231 88 22 chr11 86401358 86401495 -35442361 + B1_Mur3 SINE Alu 1 146 -3 1 1244 308 242 202 0 chr11 86401865 86401964 -35441892 - RSINE1 SINE B4 -45 120 2 1 1244 1402 84 16 0 chr11 86402052 86402242 -35441614 - B2_Mm1t SINE B2 0 193 1 1 1244 402 299 24 0 chr11 86402243 86402370 -35441486 - ID_B1 SINE B4 -14 210 81 1 1244 965 82 89 0 chr11 86402643 86402778 -35441078 - B1_Mus1 SINE Alu 0 148 2 1 1244 195 69 0 0 chr11 86402910 86402939 -35440917 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1244 563 120 39 20 chr11 86403102 86403204 -35440652 + B1_Mus1 SINE Alu 39 142 -6 1 1244 1103 95 0 26 chr11 86403210 86403362 -35440494 + B1_Mus1 SINE Alu 1 148 0 1 1244 188 111 28 0 chr11 86403655 86403691 -35440165 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1244 1110 54 13 26 chr11 86403925 86404076 -35439780 - B1_Mur4 SINE Alu 0 150 2 1 1244 192 40 0 0 chr11 86404783 86404808 -35439048 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1244 447 192 279 0 chr11 86404826 86404930 -35438926 + B1_Mur2 SINE Alu 2 134 -15 1 1244 23 0 0 0 chr11 86405316 86405339 -35438517 + AT_rich Low_complexity Low_complexity 1 23 0 1 1244 435 300 19 45 chr11 86405381 86405538 -35438318 - RSINE1 SINE B4 -8 157 5 1 1244 335 307 57 28 chr11 86405542 86405555 -35438301 - B1_Mur4 SINE Alu 0 150 68 1 1244 556 248 16 0 chr11 86405555 86405676 -35438180 - ID_B1 SINE B4 -9 215 93 1 1244 295 160 6 57 chr11 86405783 86405864 -35437992 - B1_Mus1 SINE Alu -51 98 19 1 1244 342 236 14 0 chr11 86406001 86406073 -35437783 - PB1D10 SINE Alu -32 85 13 1 1244 347 330 0 0 chr11 86406188 86406291 -35437565 - PB1D10 SINE Alu -14 103 1 1 1244 209 161 0 0 chr11 86406525 86406568 -35437288 + G-rich Low_complexity Low_complexity 1 43 0 1 1244 469 267 0 0 chr11 86407880 86407985 -35435871 - PB1D7 SINE Alu -9 111 7 1 1244 644 172 8 32 chr11 86408018 86408144 -35435712 - B1_Mur2 SINE Alu -21 128 6 1 1244 316 206 8 143 chr11 86408042 86408161 -35435695 - MT2B LTR ERVL -344 257 155 1 1244 768 267 15 35 chr11 86408284 86408482 -35435374 - B3A SINE B2 -3 195 2 1 1244 1319 82 38 0 chr11 86408586 86408769 -35435087 + B2_Mm2 SINE B2 2 191 -4 1 1244 1202 27 0 20 chr11 86409149 86409299 -35434557 - B1_Mus2 SINE Alu 0 147 1 1 1244 350 180 22 61 chr11 86409409 86409533 -35434323 + B1_Mur1 SINE Alu 1 132 -17 1 1244 180 125 0 0 chr11 86409537 86409569 -35434287 + (CAG)n Simple_repeat Simple_repeat 1 32 0 1 1244 180 0 0 0 chr11 86409590 86409610 -35434246 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1244 680 245 111 30 chr11 86410635 86410833 -35433023 + B3 SINE B2 1 214 -2 1 1244 226 214 35 18 chr11 86410833 86410890 -35432966 + B1_Mur2 SINE Alu 71 128 -21 1 1244 267 31 0 0 chr11 86410899 86410931 -35432925 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1244 186 43 0 0 chr11 86410931 86410954 -35432902 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 1 1244 856 128 0 15 chr11 86411142 86411277 -35432579 + B1_Mur3 SINE Alu 17 149 0 1 1244 21 0 0 0 chr11 86411279 86411300 -35432556 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 375 250 70 18 chr11 86411336 86411450 -35432406 + PB1D9 SINE Alu 1 120 0 1 1244 673 153 27 0 chr11 86411650 86411761 -35432095 - B1_Mus2 SINE Alu -13 134 21 1 1244 273 253 10 87 chr11 86411682 86411786 -35432070 - MT2B LTR ERVL -344 257 162 1 1244 320 274 71 24 chr11 86411802 86411929 -35431927 - B3 SINE B2 -14 202 70 1 1244 219 292 121 22 chr11 86412191 86412282 -35431574 - L2b LINE L2 -18 3357 3258 1 1244 737 241 100 5 chr11 86412348 86412548 -35431308 + ID_B1 SINE B4 2 220 -4 1 1244 1200 41 7 0 chr11 86412608 86412753 -35431103 + B1_Mm SINE Alu 1 146 -1 1 1244 362 39 19 0 chr11 86412762 86412814 -35431042 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1244 1450 78 16 0 chr11 86412820 86413011 -35430845 + B2_Mm2 SINE B2 2 195 0 1 1244 204 40 0 0 chr11 86413011 86413036 -35430820 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1244 313 297 118 8 chr11 86413424 86413543 -35430313 + MER20 DNA MER1_type 87 218 -1 1 1244 250 167 90 15 chr11 86414101 86414185 -35429671 - PB1D7 SINE Alu -59 90 1 1 1244 517 213 9 44 chr11 86414292 86414405 -35429451 - B1_Mur4 SINE Alu -27 123 15 1 1244 208 226 23 23 chr11 86414782 86414868 -35428988 + (CAAA)n Simple_repeat Simple_repeat 2 87 0 1 1244 27 29 0 0 chr11 86415666 86415700 -35428156 + AT_rich Low_complexity Low_complexity 1 34 0 1 1244 1240 42 0 0 chr11 86416101 86416244 -35427612 + B1_Mus2 SINE Alu 5 147 0 1 1244 921 150 0 7 chr11 86416328 86416476 -35427380 + B1_Mur3 SINE Alu 2 148 -1 1 1244 220 200 0 0 chr11 86416642 86416687 -35427169 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1244 307 216 54 89 chr11 86417001 86417016 -35426840 + MT2B LTR ERVL 150 160 -441 1 1244 800 52 18 70 chr11 86417016 86417167 -35426689 + B1_Mus2 SINE Alu 4 149 0 1 1244 216 0 0 0 chr11 86417167 86417191 -35426665 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1244 716 167 22 0 chr11 86417674 86417812 -35426044 + B1_Mur4 SINE Alu 9 149 -1 1 1244 189 0 0 0 chr11 86417812 86417833 -35426023 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 1 1244 243 0 0 0 chr11 86417907 86417934 -35425922 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 1 1244 739 172 0 30 chr11 86418951 86419083 -35424773 + B1_Mus1 SINE Alu 1 128 -20 1 1244 337 311 18 36 chr11 86419223 86419333 -35424523 + Lx8 LINE L1 7229 7336 -137 1 1244 319 241 51 0 chr11 86419515 86419594 -35424262 + B3 SINE B2 128 210 -6 1 1244 858 127 8 0 chr11 86419686 86419812 -35424044 - B1_Mus2 SINE Alu -19 128 2 1 1244 1106 202 10 5 chr11 86419824 86420033 -35423823 - B3 SINE B2 -6 210 1 1 1244 232 284 99 0 chr11 86421261 86421342 -35422514 + ID_B1 SINE B4 99 187 -37 1 1244 220 241 184 0 chr11 86421280 86421367 -35422489 + B1_Mus1 SINE Alu 39 141 -7 1 1244 21 0 0 0 chr11 86421373 86421394 -35422462 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 25 0 0 0 chr11 86421658 86421683 -35422173 + AT_rich Low_complexity Low_complexity 1 25 0 1 1244 561 68 0 0 chr11 86421900 86421974 -35421882 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 1 1244 650 185 77 0 chr11 86422005 86422135 -35421721 - B1_Mur4 SINE Alu -4 146 7 1 1244 257 0 30 0 chr11 86422139 86422172 -35421684 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1244 658 147 78 0 chr11 86422172 86422288 -35421568 - B2_Mm2 SINE B2 -35 160 36 1 1244 667 192 214 6 chr11 86422528 86422706 -35421150 + B3 SINE B2 1 215 -1 1 1244 210 71 0 0 chr11 86423172 86423200 -35420656 + (CCCA)n Simple_repeat Simple_repeat 3 30 0 1 1244 522 0 0 0 chr11 86423205 86423263 -35420593 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1244 664 227 8 0 chr11 86423263 86423391 -35420465 - B1_Mus2 SINE Alu -18 129 1 1 1244 454 264 18 148 chr11 86423503 86423672 -35420184 - B1_Mur4 SINE Alu 0 150 4 1 1244 325 296 80 22 chr11 86423786 86423924 -35419932 - RSINE1 SINE B4 -12 153 8 1 1244 267 263 0 95 chr11 86423946 86424030 -35419826 - ID_B1 SINE B4 -28 196 121 1 1244 353 254 24 95 chr11 86424231 86424357 -35419499 - B4 SINE B4 -141 151 35 1 1244 382 160 11 50 chr11 86424509 86424609 -35419247 + B1_Mus2 SINE Alu 56 149 0 1 1244 231 114 0 0 chr11 86424610 86424654 -35419202 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1244 504 208 10 0 chr11 86425049 86425145 -35418711 - RSINE1 SINE B4 -68 97 1 1 1244 509 217 17 17 chr11 86425206 86425323 -35418533 - PB1D10 SINE Alu 0 117 1 1 1244 373 232 101 0 chr11 86425687 86425825 -35418031 - L1MA5 LINE L1 -262 6038 5887 1 1244 508 204 43 17 chr11 86425828 86425943 -35417913 - PB1D9 SINE Alu 0 120 3 1 1244 306 336 42 0 chr11 86426031 86426174 -35417682 - B4A SINE B4 -143 149 1 1 1244 513 207 9 26 chr11 86426358 86426472 -35417384 - PB1D9 SINE Alu -3 117 6 1 1244 606 269 33 46 chr11 86426514 86426716 -35417140 - B3 SINE B2 -6 189 2 1 1244 24 0 0 0 chr11 86426736 86426760 -35417096 + AT_rich Low_complexity Low_complexity 1 24 0 1 1244 457 245 11 0 chr11 86426769 86426863 -35416993 - U1 snRNA snRNA -6 159 65 1 1244 655 193 0 0 chr11 86426882 86426996 -35416860 - B1_Mur4 SINE Alu -34 116 3 1 1244 22 0 0 0 chr11 86427296 86427318 -35416538 + AT_rich Low_complexity Low_complexity 1 22 0 1 1244 1337 45 44 16 chr11 86427941 86428172 -35415684 - L1Md_F3 LINE L1 0 6584 6397 1 1244 356 291 16 39 chr11 86428306 86428459 -35415397 - B1_Mur2 SINE Alu 0 147 1 1 1244 595 252 94 12 chr11 86428547 86428737 -35415119 - B3 SINE B2 -3 192 1 1 1244 22 56 0 0 chr11 86428746 86428782 -35415074 + AT_rich Low_complexity Low_complexity 1 36 0 1 1244 576 198 17 25 chr11 86428809 86428928 -35414928 - PB1D9 SINE Alu -1 119 2 1 1244 537 176 181 7 chr11 86428949 86429061 -35414795 - RMER1B Other Other -2 1064 942 1 1244 405 0 0 0 chr11 86429061 86429106 -35414750 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1244 537 176 181 7 chr11 86429106 86429142 -35414714 - RMER1B Other Other -125 941 890 1 1244 1320 232 62 170 chr11 86429142 86429896 -35413960 - RMER1B Other Other -329 737 65 1 1244 255 286 0 0 chr11 86429899 86429955 -35413901 - RMER1B Other Other -976 90 35 1 1244 732 222 51 51 chr11 86430022 86430217 -35413639 - B3A SINE B2 -3 195 1 1 1244 280 137 20 0 chr11 86430325 86430376 -35413480 + B1_Mus2 SINE Alu 2 53 -94 1 1244 26 50 0 0 chr11 86430537 86430577 -35413279 + AT_rich Low_complexity Low_complexity 1 40 0 1 1244 750 239 63 32 chr11 86430578 86430768 -35413088 - B3 SINE B2 -20 196 1 1 1244 189 0 0 0 chr11 86430965 86430986 -35412870 + (TTTC)n Simple_repeat Simple_repeat 1 21 0 1 1244 776 133 14 29 chr11 86430988 86431127 -35412729 - B1_Mus2 SINE Alu -2 145 9 1 1244 354 264 71 26 chr11 86431030 86431143 -35412713 - B4 SINE B4 -94 198 81 1 1244 581 229 181 0 chr11 86431152 86431357 -35412499 - Lx9 LINE L1 -5 7639 7398 1 1244 440 306 30 7 chr11 86431750 86431885 -35411971 + RSINE1 SINE B4 2 139 -26 1 1244 267 54 0 0 chr11 86432343 86432380 -35411476 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1244 639 242 0 108 chr11 86432536 86432703 -35411153 - B1_Mur2 SINE Alu 0 149 1 1 1244 1255 93 66 0 chr11 86432799 86432958 -35410898 + B2_Mm2 SINE B2 1 162 -33 1 1244 324 0 0 0 chr11 86432958 86432994 -35410862 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1 1244 1255 93 66 0 chr11 86432994 86433016 -35410840 + B2_Mm2 SINE B2 163 193 -2 1 1244 989 53 0 0 chr11 86433032 86433163 -35410693 + B1_Mus1 SINE Alu 10 140 -8 1 1244 387 321 27 20 chr11 86433253 86433526 -35410330 - L1ME3 LINE L1 -187 5986 5707 1 1244 618 149 175 0 chr11 86433527 86433641 -35410215 + B1_Mur4 SINE Alu 8 141 -9 1 1244 230 0 0 32 chr11 86433641 86433672 -35410184 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 1 1244 229 324 28 28 chr11 86433703 86433811 -35410045 - PB1D10 SINE Alu -9 108 1 1 1244 240 302 11 44 chr11 86433842 86433932 -35409924 + B3A SINE B2 112 198 0 1 1244 786 206 14 7 chr11 86433963 86434110 -35409746 - B1_Mur2 SINE Alu 0 149 2 1 1244 674 262 11 23 chr11 86434115 86434291 -35409565 + B3A SINE B2 25 198 0 1 1244 877 154 7 39 chr11 86434417 86434572 -35409284 - B1_Mur4 SINE Alu 0 150 1 1 1244 340 300 64 0 chr11 86434586 86434696 -35409160 - RSINE1 SINE B4 -46 119 3 1 1244 306 164 0 0 chr11 86434777 86434832 -35409024 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1244 227 367 0 44 chr11 86434835 86434949 -35408907 + PB1D10 SINE Alu 2 110 -7 1 1244 230 237 90 160 chr11 86435114 86435270 -35408586 + B1_Mur3 SINE Alu 5 149 0 1 1244 21 0 0 0 chr11 86436310 86436331 -35407525 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 21 71 0 0 chr11 86436379 86436421 -35407435 + AT_rich Low_complexity Low_complexity 1 42 0 1 1244 240 333 42 21 chr11 86436560 86436655 -35407201 + B3A SINE B2 97 193 -5 1 1244 548 211 231 12 chr11 86437216 86437389 -35406467 - B3 SINE B2 -5 211 1 1 1244 821 221 75 30 chr11 86437496 86437697 -35406159 + B3 SINE B2 7 216 0 1 1244 1363 100 16 0 chr11 86438744 86438934 -35404922 - B2_Mm2 SINE B2 -2 193 1 1 1244 225 246 15 15 chr11 86438972 86439038 -35404818 + PB1 SINE Alu 3 68 -81 1 1244 859 211 14 32 chr11 86439836 86440056 -35403800 + B3 SINE B2 1 216 0 1 1244 294 337 32 0 chr11 86440093 86440188 -35403668 + B1F SINE Alu 1 98 -51 1 1244 254 268 28 112 chr11 86440141 86440284 -35403572 + B4A SINE B4 43 173 -119 1 1244 589 184 79 0 chr11 86440207 86440321 -35403535 + B1_Mur2 SINE Alu 13 135 -14 1 1244 216 0 0 0 chr11 86440321 86440345 -35403511 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 1 1244 301 260 0 0 chr11 86440678 86440751 -35403105 + ID4 SINE ID 2 74 -9 1 1244 212 325 88 0 chr11 86440932 86441046 -35402810 - ID_B1 SINE B4 -1 223 100 1 1244 940 136 39 0 chr11 86441209 86441364 -35402492 + B2_Mm2 SINE B2 2 162 -33 1 1244 183 80 0 0 chr11 86441364 86441389 -35402467 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1244 500 289 14 82 chr11 86441594 86441618 -35402238 - B2_Mm2 SINE B2 0 195 173 1 1244 1005 201 5 29 chr11 86441618 86441828 -35402028 - B3 SINE B2 -7 209 5 1 1244 803 253 6 8 chr11 86441828 86442010 -35401846 - B3 SINE B2 -38 178 3 1 1244 262 262 82 12 chr11 86442040 86442125 -35401731 - PB1D7 SINE Alu -13 107 17 1 1244 677 202 103 12 chr11 86442172 86442337 -35401519 - B3 SINE B2 -26 190 11 1 1244 956 244 28 19 chr11 86442436 86442649 -35401207 + B3 SINE B2 2 216 0 1 1244 352 254 84 8 chr11 86443584 86443715 -35400141 + B1F1 SINE Alu 1 141 -8 1 1244 276 333 39 0 chr11 86443726 86443804 -35400052 + ID4_ SINE ID 3 83 0 1 1244 1328 47 0 0 chr11 86444601 86444760 -35399096 + B2_Mm1a SINE B2 1 159 -34 1 1244 315 0 0 0 chr11 86444760 86444795 -35399061 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 1 1244 1614 37 0 0 chr11 86444816 86445005 -35398851 + B2_Mm1t SINE B2 2 190 -3 1 1244 268 133 83 0 chr11 86445019 86445079 -35398777 - PB1D10 SINE Alu -1 116 52 1 1244 508 267 52 0 chr11 86445070 86445186 -35398670 - B3A SINE B2 -76 122 1 1 1244 316 301 60 0 chr11 86445269 86445352 -35398504 + PB1 SINE Alu 26 113 -14 1 1244 250 191 206 0 chr11 86445972 86446035 -35397821 + ID4 SINE ID 3 78 -5 1 1244 686 171 68 41 chr11 86446093 86446239 -35397617 + B1_Mur4 SINE Alu 1 150 0 1 1244 607 224 165 48 chr11 86446825 86447130 -35396726 + B4A SINE B4 1 270 -22 1 1244 1423 39 78 0 chr11 86447667 86447685 -35396171 - B2_Mm1t SINE B2 0 193 176 1 1244 207 0 0 0 chr11 86447685 86447708 -35396148 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1244 1423 39 78 0 chr11 86447708 86447868 -35395988 - B2_Mm1t SINE B2 -18 175 2 1 1244 247 294 0 76 chr11 86448116 86448208 -35395648 + PB1D7 SINE Alu 35 119 -1 1 1244 1517 58 0 10 chr11 86449704 86449897 -35393959 + B2_Mm1a SINE B2 2 192 -1 1 1244 803 249 5 21 chr11 86449912 86450105 -35393751 + B3A SINE B2 5 194 -4 1 1244 498 245 18 28 chr11 86450119 86450228 -35393628 + B1_Mur3 SINE Alu 1 108 -41 1 1244 349 316 94 71 chr11 86450688 86450854 -35393002 + L1MC5 LINE L1 7125 7299 -662 1 1244 750 160 84 0 chr11 86450854 86450985 -35392871 + B1_Mur3 SINE Alu 3 144 -5 1 1244 349 316 94 71 chr11 86450985 86451158 -35392698 + L1MC5 LINE L1 7300 7472 -489 1 1244 382 244 0 0 chr11 86451290 86451368 -35392488 - U4 snRNA snRNA -67 78 1 1 1244 253 235 158 12 chr11 86452111 86452193 -35391663 + MTEa LTR MaLR 268 361 -18 1 1244 207 0 0 0 chr11 86452509 86452532 -35391324 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1244 409 283 191 0 chr11 86452756 86452908 -35390948 + B3A SINE B2 1 181 -17 1 1244 505 265 22 0 chr11 86453024 86453185 -35390671 - B3 SINE B2 0 216 7 1 1244 1020 101 142 0 chr11 86453197 86453366 -35390490 - B2_Mm1t SINE B2 0 193 1 1 1244 387 328 120 26 chr11 86453366 86453474 -35390382 - L1MB5 LINE L1 -300 5874 5772 1 1244 345 82 0 0 chr11 86453474 86453523 -35390333 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 1 1244 387 328 120 26 chr11 86453523 86453765 -35390091 - L1MB5 LINE L1 -403 5771 5492 1 1244 369 277 12 0 chr11 86453812 86453895 -35389961 - PB1D7 SINE Alu -3 117 34 1 1244 373 264 38 57 chr11 86453909 86454066 -35389790 - L1MB5 LINE L1 -689 5489 5336 1 1244 502 279 69 9 chr11 86454282 86454499 -35389357 - L1MB5 LINE L1 -1020 5126 4897 1 1244 467 207 70 35 chr11 86454551 86454651 -35389205 + PB1D9 SINE Alu 1 106 -14 1 1244 225 0 0 0 chr11 86454651 86454676 -35389180 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1 1244 467 207 70 35 chr11 86454676 86454690 -35389166 + PB1D9 SINE Alu 107 119 -1 1 1244 230 0 33 0 chr11 86455011 86455041 -35388815 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1244 986 61 121 0 chr11 86455044 86455176 -35388680 - B1_Mus1 SINE Alu 0 148 1 1 1244 327 191 14 29 chr11 86455448 86455518 -35388338 + ID2 SINE ID 2 70 -13 1 1244 737 254 69 0 chr11 86455578 86455767 -35388089 + B3 SINE B2 4 205 -11 1 1244 24 0 0 0 chr11 86455846 86455870 -35387986 + AT_rich Low_complexity Low_complexity 1 24 0 1 1244 1141 75 0 7 chr11 86455872 86456019 -35387837 - B1_Mus1 SINE Alu -2 146 1 1 1244 526 155 40 30 chr11 86456020 86456120 -35387736 - PB1D9 SINE Alu 0 120 20 1 1244 515 335 44 0 chr11 86456194 86456352 -35387504 - RSINE1 SINE B4 0 165 1 1 1244 392 293 8 65 chr11 86456714 86456838 -35387018 - PB1D10 SINE Alu 0 117 1 1 1244 443 290 0 0 chr11 86457729 86457829 -35386027 + B3A SINE B2 10 109 -89 1 1244 259 304 33 100 chr11 86457859 86458009 -35385847 + RSINE1 SINE B4 26 165 0 1 1244 23 33 0 0 chr11 86458021 86458051 -35385805 + AT_rich Low_complexity Low_complexity 1 30 0 1 1244 785 232 124 16 chr11 86458535 86458728 -35385128 - B3 SINE B2 -2 214 1 1 1244 321 26 0 0 chr11 86458753 86458791 -35385065 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1244 437 276 94 8 chr11 86458792 86458920 -35384936 - B3A SINE B2 -33 165 27 1 1244 985 85 43 0 chr11 86458938 86459079 -35384777 - B1_Mus2 SINE Alu 0 147 1 1 1244 204 167 24 0 chr11 86459299 86459341 -35384515 + T-rich Low_complexity Low_complexity 2 44 0 1 1244 237 250 24 36 chr11 86459506 86459589 -35384267 + PB1D7 SINE Alu 39 120 0 1 1244 228 35 0 0 chr11 86459725 86459754 -35384102 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1244 395 298 87 69 chr11 86459980 86460153 -35383703 + ID_B1 SINE B4 27 202 -22 1 1244 245 204 0 0 chr11 86460401 86460445 -35383411 - RLTR1D LTR ERV1 -418 187 144 1 1244 286 197 14 83 chr11 86460505 86460577 -35383279 - tRNA-Ala-GCG tRNA tRNA -8 67 1 1 1244 210 71 0 0 chr11 86460718 86460746 -35383110 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1244 300 53 0 0 chr11 86461440 86461478 -35382378 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1244 689 212 58 34 chr11 86461829 86462034 -35381822 + B3 SINE B2 1 210 -6 1 1244 230 282 0 56 chr11 86462401 86462418 -35381438 + L1M5 LINE L1 2539 2553 -3593 1 1244 1496 221 63 15 chr11 86462418 86462817 -35381039 + MTD LTR MaLR 2 419 0 1 1244 230 282 0 56 chr11 86462817 86462889 -35380967 + L1M5 LINE L1 2554 2623 -3523 1 1244 231 381 51 10 chr11 86463260 86463358 -35380498 - PB1D7 SINE Alu -18 102 1 1 1244 230 200 22 0 chr11 86463554 86463599 -35380257 - B1F1 SINE Alu -94 55 10 1 1244 288 0 0 0 chr11 86463957 86463989 -35379867 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1244 246 32 0 0 chr11 86464129 86464160 -35379696 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1244 466 199 94 133 chr11 86464724 86464927 -35378929 - B3 SINE B2 0 195 1 1 1244 1475 58 26 0 chr11 86465294 86465484 -35378372 + B2_Mm2 SINE B2 1 195 0 1 1244 476 217 48 61 chr11 86465683 86465830 -35378026 + B1F1 SINE Alu 4 148 -1 1 1244 270 273 0 0 chr11 86465863 86465940 -35377916 - ID4 SINE ID 0 83 7 1 1244 900 147 15 0 chr11 86467392 86467528 -35376328 - B1_Mur4 SINE Alu -11 139 2 1 1244 276 296 12 0 chr11 86467600 86467681 -35376175 + ID4_ SINE ID 2 83 0 1 1244 310 344 106 85 chr11 86467728 86468011 -35375845 + B4A SINE B4 1 289 -3 1 1244 287 316 43 49 chr11 86468109 86468272 -35375584 - MIRb SINE MIR -1 261 100 1 1244 1390 77 0 10 chr11 86468274 86468470 -35375386 + B2_Mm2 SINE B2 2 195 0 1 1244 1302 67 62 6 chr11 86468483 86468662 -35375194 + B2_Mm2 SINE B2 2 190 -5 1 1244 771 191 14 21 chr11 86468674 86468818 -35375038 + B1_Mus1 SINE Alu 2 144 -4 1 1244 423 272 0 32 chr11 86468976 86469071 -35374785 + PB1D10 SINE Alu 1 92 -25 1 1244 414 234 60 43 chr11 86469146 86469262 -35374594 - B3 SINE B2 -1 215 98 1 1244 753 233 27 145 chr11 86469467 86469688 -35374168 - B3 SINE B2 0 195 1 1 1244 648 193 0 0 chr11 86470514 86470633 -35373223 + PB1D9 SINE Alu 1 119 -1 1 1244 469 72 3 60 chr11 86470666 86470749 -35373107 + RLTR18B LTR ERVK 1 76 -436 1 1244 576 0 0 0 chr11 86470749 86470813 -35373043 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1244 1553 191 108 40 chr11 86470813 86471173 -35372683 + RLTR18B LTR ERVK 77 503 -9 1 1244 714 191 227 6 chr11 86471524 86471687 -35372169 + B3 SINE B2 8 206 -10 1 1244 507 73 0 0 chr11 86471820 86471888 -35371968 + (CTA)n Simple_repeat Simple_repeat 1 68 0 1 1244 301 254 67 53 chr11 86471949 86472024 -35371832 - B4A SINE B4 -87 78 2 1 1244 647 206 21 7 chr11 86472216 86472358 -35371498 + B1_Mus1 SINE Alu 5 148 0 1 1244 216 67 0 0 chr11 86472363 86472393 -35371463 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1244 197 83 28 0 chr11 86472396 86472432 -35371424 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 1244 814 284 91 4 chr11 86472549 86472779 -35371077 + B4A SINE B4 43 292 0 1 1244 276 356 57 9 chr11 86472926 86473031 -35370825 - PB1D10 SINE Alu -7 110 1 1 1244 1456 52 0 81 chr11 86473675 86473843 -35370013 - B2_Mm2 SINE B2 -2 193 42 1 1244 1615 37 0 5 chr11 86473843 86474035 -35369821 - B2_Mm1t SINE B2 -2 191 1 1 1244 1456 52 0 81 chr11 86474035 86474076 -35369780 - B2_Mm2 SINE B2 -154 41 1 1 1244 553 307 7 26 chr11 86474114 86474268 -35369588 - RSINE1 SINE B4 -8 157 7 1 1244 450 53 0 0 chr11 86474951 86475008 -35368848 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1 1244 324 308 8 8 chr11 86475021 86475152 -35368704 - B1F2 SINE Alu -17 132 2 1 1244 392 198 113 0 chr11 86475295 86475401 -35368455 + PB1D9 SINE Alu 1 118 -2 1 1244 261 0 0 0 chr11 86475423 86475452 -35368404 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1244 1053 70 35 0 chr11 86475593 86475735 -35368121 + B1_Mus1 SINE Alu 2 148 0 1 1244 258 32 0 0 chr11 86475801 86475832 -35368024 + (CTTTG)n Simple_repeat Simple_repeat 3 33 0 1 1244 689 118 64 0 chr11 86475845 86475955 -35367901 - B1_Mur4 SINE Alu -6 144 28 1 1244 277 221 195 0 chr11 86475965 86476042 -35367814 - B1_Mur4 SINE Alu -12 138 47 1 1244 2191 93 16 0 chr11 86476103 86476415 -35367441 - ORR1A2 LTR MaLR -8 319 3 1 1244 269 324 128 44 chr11 86477264 86477490 -35366366 + MIRc SINE MIR 10 254 -14 1 1244 281 196 39 0 chr11 86477933 86477984 -35365872 - ID2 SINE ID -30 53 1 1 1244 537 195 136 16 chr11 86478809 86478934 -35364922 + B1_Mur3 SINE Alu 2 141 -8 1 1244 288 0 0 0 chr11 86478953 86478985 -35364871 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1244 390 221 133 1 chr11 86479053 86479149 -35364707 - B1_Mur2 SINE Alu -3 117 11 1 1244 225 132 0 0 chr11 86479574 86479612 -35364244 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1244 844 165 211 22 chr11 86479650 86479830 -35364026 + B3 SINE B2 3 216 0 1 1244 274 176 19 56 chr11 86480138 86480192 -35363664 + ID SINE ID 2 53 -171 1 1244 289 286 39 0 chr11 86480196 86480273 -35363583 + PB1D10 SINE Alu 30 109 -8 1 1244 653 283 133 28 chr11 86480330 86480548 -35363308 + 7SK RNA RNA 2 242 -89 1 1244 259 298 174 0 chr11 86480550 86480671 -35363185 + B1F SINE Alu 1 142 -7 1 1244 1109 278 10 34 chr11 86480673 86480971 -35362885 + B4 SINE B4 1 291 -1 1 1244 330 161 54 0 chr11 86481022 86481078 -35362778 + HAL1-3A_ME LINE L1 1975 2033 -825 1 1244 379 274 8 50 chr11 86481506 86481625 -35362231 - ID_B1 SINE B4 -8 216 103 1 1244 823 205 128 31 chr11 86481739 86481996 -35361860 - B4A SINE B4 -10 282 1 1 1244 1104 106 82 16 chr11 86482203 86482386 -35361470 + B2_Mm2 SINE B2 1 195 0 1 1244 606 14 0 0 chr11 86482487 86482558 -35361298 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 1244 815 173 23 0 chr11 86482562 86482695 -35361161 - B1_Mur4 SINE Alu -13 137 2 1 1244 207 0 0 0 chr11 86482791 86482814 -35361042 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1244 451 278 55 8 chr11 86482869 86482996 -35360860 + B1F2 SINE Alu 1 133 -16 1 1244 244 349 0 12 chr11 86483528 86483612 -35360244 + ID4 SINE ID 1 83 0 1 1244 306 295 112 11 chr11 86483656 86483745 -35360111 + PB1D10 SINE Alu 6 103 -14 1 1244 324 120 0 0 chr11 86484016 86484066 -35359790 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1244 626 117 6 46 chr11 86484066 86484194 -35359662 - B1_Mus2 SINE Alu 0 147 7 1 1244 239 301 70 13 chr11 86484645 86484803 -35359053 + L2 LINE L2 2174 2340 -1079 1 1244 224 281 18 0 chr11 86485234 86485291 -35358565 + CT-rich Low_complexity Low_complexity 2 59 0 1 1244 938 148 56 0 chr11 86485291 86485468 -35358388 - B2_Mm2 SINE B2 0 193 2 1 1244 557 150 50 0 chr11 86485483 86485583 -35358273 - B1_Mur3 SINE Alu 0 149 45 1 1244 881 196 103 0 chr11 86486015 86486199 -35357657 - B3 SINE B2 -12 204 2 1 1244 340 282 27 0 chr11 86486508 86486630 -35357226 + B1F2 SINE Alu 8 131 -18 1 1244 525 249 206 0 chr11 86486763 86486928 -35356928 - B3 SINE B2 -17 199 1 1 1244 421 232 10 21 chr11 86487143 86487157 -35356699 + B4 SINE B4 72 84 -208 1 1244 646 104 0 25 chr11 86487157 86487271 -35356585 + B1_Mus1 SINE Alu 1 109 -11 1 1244 1009 221 19 10 chr11 86487319 86487525 -35356331 + B3 SINE B2 1 208 -8 1 1244 1154 49 0 20 chr11 86487606 86487753 -35356103 - B1_Mus1 SINE Alu 0 148 5 1 1244 827 159 29 0 chr11 86487768 86487906 -35355950 + B1_Mus1 SINE Alu 5 146 -2 1 1244 725 218 8 0 chr11 86488652 86488785 -35355071 + RSINE1 SINE B4 32 165 0 1 1244 240 154 0 0 chr11 86489338 86489390 -35354466 + T-rich Low_complexity Low_complexity 1 52 0 1 1244 1223 41 7 0 chr11 86489408 86489554 -35354302 - B1_Mm SINE Alu 0 147 1 1 1244 816 217 77 36 chr11 86489853 86490049 -35353807 - B3 SINE B2 -12 204 1 1 1244 500 252 122 0 chr11 86490115 86490246 -35353610 - RSINE1 SINE B4 -17 148 2 1 1244 351 219 184 20 chr11 86490276 86490374 -35353482 - RSINE1 SINE B4 -21 144 31 1 1244 307 261 62 42 chr11 86490629 86490725 -35353131 - RSINE1 SINE B4 -23 142 45 1 1244 357 24 0 0 chr11 86490752 86490794 -35353062 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1244 654 212 60 15 chr11 86490794 86490928 -35352928 - B1_Mus2 SINE Alu -7 140 1 1 1244 254 278 69 85 chr11 86491108 86491163 -35352693 - B2_Mm2 SINE B2 -6 189 37 1 1244 500 261 81 40 chr11 86491163 86491287 -35352569 - RSINE1 SINE B4 -25 140 12 1 1244 482 198 25 19 chr11 86491326 86491455 -35352401 + B1_Mur3 SINE Alu 20 149 0 1 1244 1147 68 0 0 chr11 86491571 86491718 -35352138 + B1_Mus2 SINE Alu 1 147 0 1 1244 357 191 0 0 chr11 86491718 86491760 -35352096 + A-rich Low_complexity Low_complexity 1 42 0 1 1244 1163 68 0 13 chr11 86491760 86491910 -35351946 + B1_Mus1 SINE Alu 1 148 0 1 1244 357 191 0 0 chr11 86491910 86491952 -35351904 + A-rich Low_complexity Low_complexity 43 84 0 1 1244 1155 74 0 13 chr11 86491952 86492102 -35351754 + B1_Mus1 SINE Alu 1 148 0 1 1244 357 191 0 0 chr11 86492102 86492126 -35351730 + A-rich Low_complexity Low_complexity 85 108 0 1 1244 1022 106 21 0 chr11 86492189 86492330 -35351526 + B1_Mus1 SINE Alu 1 144 -4 1 1244 21 0 0 0 chr11 86492331 86492352 -35351504 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 296 313 145 21 chr11 86492549 86492742 -35351114 - MIR SINE MIR -34 228 10 1 1244 570 192 19 0 chr11 86492742 86492846 -35351010 - PB1D9 SINE Alu -13 107 2 1 1244 757 178 272 0 chr11 86493133 86493302 -35350554 - B3 SINE B2 -1 215 1 1 1244 423 269 56 0 chr11 86493438 86493546 -35350310 + B1_Mur1 SINE Alu 1 114 -35 1 1244 273 280 0 51 chr11 86494187 86494266 -35349590 - PB1D10 SINE Alu -5 112 38 1 1244 234 225 144 59 chr11 86494451 86494569 -35349287 + MIRc SINE MIR 17 144 -124 1 1244 251 330 139 24 chr11 86495006 86495214 -35348642 - MIRc SINE MIR -15 253 22 1 1244 581 200 57 9 chr11 86495214 86495320 -35348536 + PB1D9 SINE Alu 3 113 -7 1 1244 1014 85 14 0 chr11 86495391 86495532 -35348324 + B1_Mus2 SINE Alu 1 143 -4 1 1244 252 0 0 0 chr11 86495532 86495560 -35348296 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1244 479 103 20 106 chr11 86495652 86495747 -35348109 + B1_Mus2 SINE Alu 45 136 -13 1 1244 203 61 0 29 chr11 86495747 86495781 -35348075 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1244 479 90 20 110 chr11 86495781 86495797 -35348059 + B1_Mus2 SINE Alu 135 147 0 1 1244 558 65 226 0 chr11 86496237 86496330 -35347526 + B1_Mur3 SINE Alu 30 143 -6 1 1244 234 0 0 0 chr11 86496706 86496732 -35347124 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1244 1561 182 140 9 chr11 86498051 86498401 -35345455 - RLTR24 LTR ERV1 0 529 134 1 1244 266 303 136 9 chr11 86498966 86499076 -35344780 + PB1D10 SINE Alu 1 124 -3 1 1244 981 163 110 34 chr11 86499128 86499337 -35344519 + URR1A DNA MER1_type 1 225 -1 1 1244 375 228 118 42 chr11 86499375 86499494 -35344362 + RSINE1 SINE B4 3 130 -35 1 1244 543 31 0 0 chr11 86499524 86499589 -35344267 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1244 437 272 232 23 chr11 86500413 86500590 -35343266 + ID_B1 SINE B4 3 216 -8 1 1244 278 345 8 57 chr11 86500623 86500746 -35343110 + PB1D10 SINE Alu 1 117 0 2 1244 226 262 350 0 chr11 86500870 86500950 -35342906 + PB1 SINE Alu 18 125 -2 3 1244 271 266 16 0 chr11 86500963 86501027 -35342829 + ID4 SINE ID 5 69 -14 4 1244 251 227 65 54 chr11 86501156 86501249 -35342607 + PB1D7 SINE Alu 26 119 -1 5 1244 893 179 0 0 chr11 86501309 86501454 -35342402 + B1_Mur4 SINE Alu 3 147 -3 6 1244 779 120 110 22 chr11 86501520 86501656 -35342200 - B1_Mus1 SINE Alu 0 148 1 7 1244 1181 74 0 0 chr11 86501801 86501949 -35341907 + B1_Mus1 SINE Alu 1 148 0 8 1244 180 0 0 0 chr11 86501949 86501969 -35341887 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1244 297 0 0 0 chr11 86502067 86502100 -35341756 + (CACTA)n Simple_repeat Simple_repeat 5 37 0 1 1244 406 264 22 0 chr11 86502129 86502220 -35341636 + PB1D10 SINE Alu 1 93 -24 1 1244 192 40 0 0 chr11 86502287 86502312 -35341544 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1244 1153 59 148 0 chr11 86502663 86502832 -35341024 - B2_Mm2 SINE B2 0 195 2 1 1244 571 286 88 0 chr11 86503758 86503940 -35339916 + B3 SINE B2 2 199 -17 1 1244 384 297 18 9 chr11 86504288 86504400 -35339456 - PB1D7 SINE Alu -7 113 1 1 1244 542 229 50 0 chr11 86504664 86504804 -35339052 - B1_Mus2 SINE Alu 0 147 1 1 1244 370 278 0 9 chr11 86505605 86505714 -35338142 + Lx8 LINE L1 7234 7341 -132 1 1244 214 259 204 0 chr11 86505914 86505968 -35337888 + B3A SINE B2 1 65 -133 1 1244 320 250 0 40 chr11 86506961 86507036 -35336820 + PB1D10 SINE Alu 11 82 -35 1 1244 249 187 9 180 chr11 86507036 86507071 -35336785 + MT2B2 LTR ERVL 175 265 -319 2 1244 555 250 155 6 chr11 86507293 86507474 -35336382 + B3 SINE B2 3 210 -6 2 1245 266 0 29 0 chr11 86510124 86510158 -35333698 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 1245 350 310 43 26 chr11 86512077 86512193 -35331663 - RSINE1 SINE B4 -31 134 17 2 1245 222 37 0 0 chr11 86512679 86512706 -35331150 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1245 251 182 73 0 chr11 86517296 86517351 -35326505 - Helitron1Na_Mam RC Helitron -331 731 673 2 1245 28 29 0 0 chr11 86517794 86517829 -35326027 + AT_rich Low_complexity Low_complexity 1 35 0 2 1245 286 106 0 0 chr11 86517829 86517876 -35325980 - B1_Mur4 SINE Alu 0 150 104 2 1245 443 18 0 18 chr11 86517886 86517943 -35325913 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2 1245 1181 43 0 0 chr11 86517946 86518086 -35325770 - B1_Mus2 SINE Alu -6 141 2 2 1245 818 298 71 35 chr11 86519134 86519388 -35324468 + B4 SINE B4 17 279 -13 3 1245 526 287 55 49 chr11 86521725 86521908 -35321948 - B4A SINE B4 0 292 109 3 1245 300 327 0 46 chr11 86521985 86522094 -35321762 - PB1D10 SINE Alu -9 108 5 3 1245 237 364 90 9 chr11 86522778 86522889 -35320967 - PB1D9 SINE Alu 0 120 1 3 1245 450 0 0 0 chr11 86523056 86523106 -35320750 + (CATA)n Simple_repeat Simple_repeat 3 52 0 3 1245 304 238 85 62 chr11 86523238 86523368 -35320488 + L1MC4 LINE L1 6942 7074 -968 3 1245 576 287 15 15 chr11 86523885 86524016 -35319840 + RSINE1 SINE B4 2 132 -33 3 1245 243 266 42 21 chr11 86524168 86524324 -35319532 + L1MB5 LINE L1 6064 6174 0 3 1245 234 0 0 0 chr11 86527121 86527147 -35316709 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1245 391 250 111 44 chr11 86527718 86527898 -35315958 - B3A SINE B2 -5 193 2 3 1245 476 260 255 17 chr11 86528154 86528389 -35315467 - B4 SINE B4 0 292 2 4 1245 228 344 113 10 chr11 86528398 86528495 -35315361 - L2a LINE L2 -248 3178 3072 4 1245 423 242 0 10 chr11 86528777 86528873 -35314983 - PB1D10 SINE Alu -1 116 22 4 1245 304 247 46 69 chr11 86528971 86529058 -35314798 - PB1D10 SINE Alu -6 111 27 4 1245 1689 26 0 0 chr11 86529490 86529683 -35314173 + B2_Mm1a SINE B2 1 193 0 4 1245 471 276 50 25 chr11 86530322 86530482 -35313374 + RSINE1 SINE B4 2 165 0 4 1245 459 300 9 18 chr11 86530639 86530751 -35313105 + RSINE1 SINE B4 8 118 -47 4 1245 707 179 104 0 chr11 86530967 86531101 -35312755 + B1_Mur2 SINE Alu 1 148 -1 4 1245 21 0 0 0 chr11 86531132 86531153 -35312703 + AT_rich Low_complexity Low_complexity 1 21 0 4 1245 219 69 0 0 chr11 86531608 86531637 -35312219 + (CTTG)n Simple_repeat Simple_repeat 3 31 0 4 1245 553 236 23 30 chr11 86531665 86531796 -35312060 - B1_Mur2 SINE Alu -19 130 1 5 1245 256 300 38 0 chr11 86531987 86532067 -35311789 - PB1D10 SINE Alu 0 117 35 5 1245 329 229 213 13 chr11 86532214 86532369 -35311487 + MER3 DNA MER1_type 2 187 -22 5 1245 1628 204 118 3 chr11 86533366 86533740 -35310116 + MTD LTR MaLR 3 419 0 5 1245 580 241 0 36 chr11 86534119 86534257 -35309599 - B3 SINE B2 -83 133 1 5 1245 323 264 150 16 chr11 86534331 86534458 -35309398 + B1F2 SINE Alu 5 148 -1 5 1245 32 26 0 0 chr11 86535372 86535411 -35308445 + AT_rich Low_complexity Low_complexity 1 39 0 5 1245 21 36 0 0 chr11 86535624 86535652 -35308204 + AT_rich Low_complexity Low_complexity 1 28 0 5 1245 626 295 40 13 chr11 86536178 86536329 -35307527 - B3A SINE B2 -42 156 2 5 1245 283 247 117 0 chr11 86536385 86536462 -35307394 + PB1D10 SINE Alu 21 106 -11 5 1245 268 206 0 45 chr11 86536748 86536772 -35307084 + T-rich Low_complexity Low_complexity 40 63 0 6 1245 239 282 49 49 chr11 86536772 86536854 -35307002 - ID4_ SINE ID 0 83 2 6 1245 268 206 0 45 chr11 86536854 86536895 -35306961 + T-rich Low_complexity Low_complexity 1 39 0 6 1245 388 124 52 2 chr11 86536910 86536980 -35306876 - B1_Mus1 SINE Alu -14 106 33 6 1245 617 270 47 94 chr11 86536969 86537161 -35306695 - B3A SINE B2 -11 184 2 6 1245 1216 35 7 0 chr11 86537387 86537532 -35306324 + B1_Mus2 SINE Alu 1 146 -1 6 1245 24 67 0 0 chr11 86537993 86538038 -35305818 + AT_rich Low_complexity Low_complexity 1 45 0 6 1245 1117 150 88 22 chr11 86539006 86539279 -35304577 + Lx9 LINE L1 7354 7644 0 6 1245 193 250 158 32 chr11 86539835 86539930 -35303926 - L4 LINE RTE -292 1737 1631 6 1245 1308 62 62 0 chr11 86540553 86540730 -35303126 + B2_Mm2 SINE B2 1 188 -7 6 1245 1041 74 173 0 chr11 86540858 86541020 -35302836 + B2_Mm1t SINE B2 1 190 -3 7 1245 21 0 0 0 chr11 86541367 86541388 -35302468 + AT_rich Low_complexity Low_complexity 1 21 0 7 1245 851 254 15 0 chr11 86541439 86541644 -35302212 + B3 SINE B2 1 208 -8 7 1245 1148 55 7 0 chr11 86541698 86541844 -35302012 + B1_Mus2 SINE Alu 1 147 0 7 1245 440 243 47 37 chr11 86541958 86542006 -35301850 - PB1D7 SINE Alu -7 113 14 7 1245 283 329 0 52 chr11 86542006 86542053 -35301803 - ID_B1 SINE B4 -83 141 95 7 1245 3183 31 39 0 chr11 86542053 86542434 -35301422 - MTA_Mm LTR MaLR 0 396 1 7 1245 440 243 47 37 chr11 86542434 86542445 -35301411 - PB1D7 SINE Alu -107 13 6 7 1245 283 329 0 52 chr11 86542445 86542463 -35301393 - ID_B1 SINE B4 -130 94 69 7 1245 32 0 0 0 chr11 86542463 86542495 -35301361 + AT_rich Low_complexity Low_complexity 1 32 0 7 1245 571 319 6 69 chr11 86542498 86542673 -35301183 - RSINE1 SINE B4 0 165 2 7 1245 399 265 94 38 chr11 86542874 86542980 -35300876 - RSINE1 SINE B4 0 165 54 7 1245 726 250 73 0 chr11 86543133 86543325 -35300531 + B3 SINE B2 1 206 -10 8 1245 189 0 0 0 chr11 86543392 86543413 -35300443 + (ACTG)n Simple_repeat Simple_repeat 3 23 0 8 1245 240 59 0 0 chr11 86543627 86543661 -35300195 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1245 380 242 93 70 chr11 86544520 86544649 -35299207 - B1_Mur1 SINE Alu -1 148 17 8 1245 262 324 143 29 chr11 86544720 86544860 -35298996 + B4 SINE B4 1 156 -136 8 1245 360 300 25 104 chr11 86545197 86545398 -35298458 + MLT1N2 LTR MaLR 364 548 -14 8 1245 351 238 48 0 chr11 86545686 86545770 -35298086 + PB1D10 SINE Alu 21 108 -9 8 1245 204 82 39 52 chr11 86545799 86545876 -35297980 + (TATAA)n Simple_repeat Simple_repeat 1 76 0 8 1245 1374 52 0 6 chr11 86546313 86546487 -35297369 - B2_Mm2 SINE B2 -22 173 1 8 1245 1453 79 16 0 chr11 86546708 86546898 -35296958 + B2_Mm1t SINE B2 1 193 0 8 1245 686 200 20 14 chr11 86549394 86549541 -35294315 + B1_Mur2 SINE Alu 2 149 0 9 1245 223 312 11 111 chr11 86549678 86549768 -35294088 + ID4 SINE ID 3 83 0 9 1245 297 245 40 50 chr11 86549968 86550067 -35293789 + PB1D10 SINE Alu 2 99 -18 9 1245 189 107 0 0 chr11 86551494 86551522 -35292334 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1245 1022 50 13 92 chr11 86551524 86551677 -35292179 - B1_Mus1 SINE Alu -6 142 2 9 1245 1125 57 0 7 chr11 86551730 86551872 -35291984 + B1_Mm SINE Alu 1 141 -6 9 1245 207 0 0 0 chr11 86551874 86551897 -35291959 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1245 944 141 35 23 chr11 86551898 86552072 -35291784 + B2_Mm2 SINE B2 13 188 -7 9 1245 577 187 154 0 chr11 86552121 86552244 -35291612 + B1_Mus2 SINE Alu 3 144 -3 9 1245 206 174 0 21 chr11 86552252 86552299 -35291557 + GA-rich Low_complexity Low_complexity 3 48 0 9 1245 955 106 43 0 chr11 86553259 86553400 -35290456 - B1_Mus2 SINE Alu 0 147 1 1 1245 855 63 158 0 chr11 86553480 86553607 -35290249 + B1_Mus2 SINE Alu 1 147 0 1 1245 837 230 68 0 chr11 86553726 86553917 -35289939 + B3 SINE B2 1 204 -12 1 1245 933 150 14 0 chr11 86553960 86554100 -35289756 + B1_Mur4 SINE Alu 2 143 -7 1 1245 1259 41 0 0 chr11 86554381 86554528 -35289328 + B1_Mus2 SINE Alu 1 147 0 1 1245 228 67 0 0 chr11 86554528 86554558 -35289298 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1 1245 404 216 3 26 chr11 86554575 86554662 -35289194 + B1_Mus1 SINE Alu 1 87 -62 1 1245 360 266 23 15 chr11 86554665 86554795 -35289061 + A-rich Low_complexity Low_complexity 3 133 0 1 1245 246 329 12 12 chr11 86555033 86555119 -35288737 + ID_B1 SINE B4 91 176 -48 1 1245 234 0 0 0 chr11 86555223 86555249 -35288607 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1245 754 168 51 7 chr11 86555771 86555909 -35287947 + B1_Mur3 SINE Alu 6 149 0 1 1245 21 0 0 0 chr11 86556026 86556047 -35287809 + AT_rich Low_complexity Low_complexity 1 21 0 1 1245 281 257 54 1 chr11 86556434 86556519 -35287337 - B1F1 SINE Alu -1 148 60 1 1245 506 55 27 0 chr11 86556562 86556635 -35287221 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 1245 219 279 90 34 chr11 86557622 86557711 -35286145 + B4A SINE B4 80 173 -119 1 1245 305 289 72 0 chr11 86557639 86557740 -35286116 + PB1D10 SINE Alu 9 125 -2 1 1245 24 32 0 0 chr11 86557949 86557980 -35285876 + AT_rich Low_complexity Low_complexity 1 31 0 1 1245 211 211 115 0 chr11 86558262 86558314 -35285542 + ID SINE ID 2 59 -165 1 1245 506 317 27 14 chr11 86558295 86558442 -35285414 - B3A SINE B2 -48 150 2 1 1245 394 230 11 65 chr11 86558491 86558584 -35285272 + PB1D9 SINE Alu 2 89 -31 1 1245 233 29 0 29 chr11 86558599 86558634 -35285222 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 1245 619 187 19 131 chr11 86559916 86560046 -35283810 + B1_Mur4 SINE Alu 2 116 -34 1 1245 1405 64 16 26 chr11 86560046 86560238 -35283618 + B2_Mm2 SINE B2 1 190 -5 1 1245 619 187 19 131 chr11 86560238 86560267 -35283589 + B1_Mur4 SINE Alu 117 143 -7 1 1245 22 0 0 0 chr11 86560268 86560290 -35283566 + AT_rich Low_complexity Low_complexity 1 22 0 1 1245 1184 68 0 0 chr11 86561382 86561529 -35282327 - B1_Mus1 SINE Alu 0 148 2 1 1245 324 315 83 9 chr11 86561565 86561674 -35282182 - PB1D10 SINE Alu 0 117 1 1 1245 661 185 83 23 chr11 86561888 86562021 -35281835 + B1F2 SINE Alu 4 144 -5 1 1245 392 293 10 0 chr11 86562219 86562318 -35281538 + PB1D10 SINE Alu 4 103 -14 1 1245 376 301 45 0 chr11 86562344 86562520 -35281336 + L1MB5 LINE L1 5887 6070 -104 1 1245 387 283 10 10 chr11 86562559 86562659 -35281197 - PB1D10 SINE Alu -2 115 16 1 1245 210 203 91 30 chr11 86562987 86563053 -35280803 + B3 SINE B2 2 71 -145 1 1245 1045 97 28 0 chr11 86564172 86564316 -35279540 + B1_Mus1 SINE Alu 1 148 0 1 1245 1105 82 7 0 chr11 86564338 86564485 -35279371 + B1_Mus1 SINE Alu 1 148 0 1 1245 335 272 17 50 chr11 86564556 86564676 -35279180 + PB1D10 SINE Alu 2 117 0 1 1245 888 170 112 10 chr11 86564696 86564892 -35278964 + B3 SINE B2 1 216 0 1 1245 22 35 0 0 chr11 86564935 86564964 -35278892 + AT_rich Low_complexity Low_complexity 1 29 0 1 1245 298 283 0 16 chr11 86564978 86565039 -35278817 - RSINE1 SINE B4 0 165 106 1 1245 184 246 122 14 chr11 86565213 86565287 -35278569 + MIR SINE MIR 109 190 -72 1 1245 795 189 0 0 chr11 86565771 86565903 -35277953 + B1_Mur4 SINE Alu 1 132 -18 1 1245 204 67 0 0 chr11 86566020 86566050 -35277806 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1245 604 221 43 14 chr11 86566196 86566334 -35277522 + B1_Mur2 SINE Alu 2 143 -6 1 1245 312 294 178 13 chr11 86566377 86566608 -35277248 + Charlie5 DNA MER1_type 2277 2545 -79 1 1245 1040 107 92 29 chr11 86566784 86566958 -35276898 - B2_Mm2 SINE B2 -9 186 2 1 1245 805 237 60 5 chr11 86566996 86567195 -35276661 - B3 SINE B2 -6 210 1 1 1245 459 245 0 26 chr11 86567224 86567337 -35276519 + PB1D10 SINE Alu 1 110 -7 1 1245 596 235 36 7 chr11 86567348 86567485 -35276371 + B1_Mur1 SINE Alu 2 142 -7 1 1245 749 109 24 40 chr11 86568990 86569114 -35274742 - RLTR24 LTR ERV1 0 529 408 1 1245 287 204 168 79 chr11 86573091 86573192 -35270664 + PB1D10 SINE Alu 5 114 -3 1 1245 248 209 141 65 chr11 86573310 86573402 -35270454 + MT2B LTR ERVL 159 257 -344 1 1245 786 78 52 0 chr11 86573331 86573447 -35270409 + B1_Mus2 SINE Alu 26 147 0 1 1245 429 246 86 100 chr11 86573905 86574045 -35269811 + ID_B1 SINE B4 84 221 -3 1 1245 260 289 32 154 chr11 86574053 86574176 -35269680 + PB1D7 SINE Alu 1 108 -12 1 1245 670 215 0 43 chr11 86574947 86575088 -35268768 + B1F SINE Alu 7 141 -8 1 1245 1058 148 33 0 chr11 86575101 86575283 -35268573 + B2_Mm2 SINE B2 4 191 -4 1 1245 288 229 49 0 chr11 86575488 86575549 -35268307 - B4 SINE B4 -12 280 217 1 1245 271 288 30 0 chr11 86575660 86575726 -35268130 - B4A SINE B4 -223 69 2 1 1245 463 189 61 22 chr11 86576052 86576166 -35267690 + B3A SINE B2 24 133 -65 1 1245 917 104 97 0 chr11 86576175 86576309 -35267547 - B1_Mus1 SINE Alu 0 148 2 1 1245 266 176 0 56 chr11 86576471 86576490 -35267366 - ID4 SINE ID -27 56 41 1 1245 397 291 21 58 chr11 86576490 86576623 -35267233 + B1F2 SINE Alu 3 129 -20 1 1245 2893 113 19 2 chr11 86576623 86577049 -35266807 - RLTR10C LTR ERVK -3 433 1 1 1245 397 304 23 53 chr11 86577049 86577070 -35266786 + B1F2 SINE Alu 130 149 0 1 1245 1092 83 21 7 chr11 86577074 86577219 -35266637 + B1_Mus1 SINE Alu 1 147 -1 1 1245 234 0 0 0 chr11 86577241 86577267 -35266589 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1 1245 1220 104 16 11 chr11 86577273 86577458 -35266398 + B2_Mm2 SINE B2 2 187 -8 1 1245 563 238 9 0 chr11 86577475 86577580 -35266276 + B1_Mus1 SINE Alu 17 122 -26 1 1245 1060 253 131 38 chr11 86577820 86578140 -35265716 + ORR1D2 LTR MaLR 21 370 0 1 1245 682 265 83 20 chr11 86578519 86578723 -35265133 + ID_B1 SINE B4 3 219 -5 1 1245 287 155 135 40 chr11 86579025 86579099 -35264757 + ID4 SINE ID 1 81 -2 1 1245 550 301 0 13 chr11 86579366 86579521 -35264335 + RSINE1 SINE B4 3 155 -10 1 1245 482 229 57 16 chr11 86579999 86580123 -35263733 - B1_Mus2 SINE Alu -12 135 7 1 1245 357 250 0 50 chr11 86580193 86580273 -35263583 - B3A SINE B2 -121 77 2 1 1245 321 358 6 18 chr11 86580648 86580813 -35263043 - RSINE1 SINE B4 -1 164 2 1 1245 710 258 146 14 chr11 86580995 86581207 -35262649 + B4A SINE B4 35 274 -18 1 1245 301 176 0 63 chr11 86581253 86581332 -35262524 + B1_Mur4 SINE Alu 75 148 -2 1 1245 232 167 0 18 chr11 86581420 86581475 -35262381 + L1MC4 LINE L1 7693 7746 -296 1 1245 1065 176 45 15 chr11 86581518 86581720 -35262136 + B3 SINE B2 5 212 -4 1 1245 991 86 0 0 chr11 86581836 86581964 -35261892 - B1_Mus1 SINE Alu -19 129 2 1 1245 501 254 40 66 chr11 86582179 86582331 -35261525 + B1F2 SINE Alu 2 149 0 1 1245 474 284 90 32 chr11 86582371 86582560 -35261296 - L2b LINE L2 -5 3370 3171 1 1245 773 103 8 0 chr11 86582680 86582806 -35261050 + (GA)n Simple_repeat Simple_repeat 1 127 0 1 1245 234 150 0 0 chr11 86582914 86582954 -35260902 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1245 278 270 69 67 chr11 86583827 86583939 -35259917 + B1F1 SINE Alu 12 117 -3 1 1245 228 280 246 8 chr11 86583844 86583970 -35259886 + B4 SINE B4 118 273 -19 1 1245 211 292 62 0 chr11 86584095 86584160 -35259696 + ID4_ SINE ID 15 83 0 1 1245 217 312 0 0 chr11 86584165 86584213 -35259643 + RSINE1 SINE B4 14 61 -104 1 1245 933 134 0 0 chr11 86584243 86584377 -35259479 + B1_Mus1 SINE Alu 1 134 -14 1 1245 237 271 128 59 chr11 86584411 86584513 -35259343 + B1F2 SINE Alu 19 127 0 1 1245 25 51 0 0 chr11 86584761 86584800 -35259056 + AT_rich Low_complexity Low_complexity 1 39 0 1 1245 459 277 35 18 chr11 86585055 86585169 -35258687 + RSINE1 SINE B4 38 153 -12 1 1245 21 0 0 0 chr11 86585737 86585758 -35258098 + AT_rich Low_complexity Low_complexity 1 21 0 1 1245 284 287 128 34 chr11 86585763 86585911 -35257945 - RSINE1 SINE B4 -1 164 3 1 1245 423 199 60 130 chr11 86585977 86586113 -35257743 - B4A SINE B4 0 292 168 1 1245 1286 79 57 0 chr11 86586152 86586329 -35257527 - B2_Mm2 SINE B2 -7 188 2 1 1245 356 279 111 0 chr11 86586413 86586585 -35257271 - L1MC4 LINE L1 -230 7812 7622 1 1245 1165 28 14 0 chr11 86586877 86587020 -35256836 - B1_Mus1 SINE Alu -2 146 2 1 1245 21 0 0 0 chr11 86587551 86587572 -35256284 + AT_rich Low_complexity Low_complexity 1 21 0 1 1245 409 217 5 32 chr11 86587917 86588037 -35255819 + B1_Mus1 SINE Alu 31 144 -6 1 1245 287 310 197 14 chr11 86588067 86588214 -35255642 - B3A SINE B2 -21 177 4 1 1245 250 87 0 42 chr11 86588233 86588281 -35255575 + (TTCTCC)n Simple_repeat Simple_repeat 3 48 0 1 1245 628 197 41 34 chr11 86588294 86588441 -35255415 - B1_Mur1 SINE Alu 0 149 2 1 1245 231 290 0 0 chr11 86588448 86588510 -35255346 + L1ME1 LINE L1 6058 6119 -60 1 1245 1337 62 73 0 chr11 86588510 86588688 -35255168 - B2_Mm2 SINE B2 -4 191 1 1 1245 625 264 7 7 chr11 86588755 86588900 -35254956 - RSINE1 SINE B4 -17 148 4 2 1245 523 259 20 75 chr11 86589353 86589499 -35254357 + ID_B1 SINE B4 81 218 -6 2 1245 214 167 0 0 chr11 86589500 86589536 -35254320 + (CCAA)n Simple_repeat Simple_repeat 1 36 0 2 1245 180 77 0 0 chr11 86589594 86589620 -35254236 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2 1245 1013 204 19 10 chr11 86589623 86589831 -35254025 + B3 SINE B2 1 210 -6 2 1245 23 0 0 0 chr11 86589885 86589908 -35253948 + AT_rich Low_complexity Low_complexity 1 23 0 2 1245 453 290 65 58 chr11 86590413 86590552 -35253304 - B1F2 SINE Alu -3 146 7 2 1245 615 269 124 44 chr11 86590790 86591016 -35252840 + Tigger5 DNA MER2_type 2 245 -2161 2 1245 1521 68 0 0 chr11 86591054 86591244 -35252612 - B2_Mm1t SINE B2 -3 190 1 2 1245 508 287 12 42 chr11 86591379 86591546 -35252310 + RSINE1 SINE B4 1 162 -3 2 1245 251 211 67 50 chr11 86591760 86591880 -35251976 - L1ME3A LINE L1 -126 6047 5926 2 1245 1243 87 42 21 chr11 86591889 86592078 -35251778 - B2_Mm1a SINE B2 0 193 1 2 1245 852 146 0 14 chr11 86592098 86592237 -35251619 + B1_Mus2 SINE Alu 8 144 -3 2 1245 458 331 60 7 chr11 86592248 86592397 -35251459 - RSINE1 SINE B4 -8 157 1 2 1245 198 0 0 0 chr11 86592618 86592640 -35251216 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1245 522 284 31 163 chr11 86592648 86592875 -35250981 + B4 SINE B4 9 205 -87 2 1245 556 185 18 44 chr11 86592879 86592992 -35250864 - PB1D9 SINE Alu 0 120 11 2 1245 259 316 29 95 chr11 86592991 86593096 -35250760 + B4 SINE B4 195 292 0 2 1245 706 182 0 0 chr11 86593143 86593253 -35250603 + B1_Mur1 SINE Alu 2 111 -38 2 1245 259 235 204 0 chr11 86593310 86593408 -35250448 + PB1D9 SINE Alu 3 120 0 2 1245 246 309 149 67 chr11 86593462 86593530 -35250326 - B4 SINE B4 -12 280 122 2 1245 403 234 68 9 chr11 86593530 86593636 -35250220 - B1_Mus2 SINE Alu -37 110 1 2 1245 246 309 149 67 chr11 86593636 86593656 -35250200 - B4 SINE B4 -12 121 71 2 1245 1630 134 48 90 chr11 86593763 86594037 -35249819 + ORR1A4 LTR MaLR 2 287 -42 2 1245 1221 14 28 0 chr11 86594037 86594180 -35249676 + B1_Mm SINE Alu 1 147 0 2 1245 1630 134 48 90 chr11 86594180 86594240 -35249616 + ORR1A4 LTR MaLR 288 322 -7 2 1245 762 171 8 15 chr11 86594244 86594375 -35249481 + B1_Mur4 SINE Alu 16 145 -5 2 1245 237 203 78 0 chr11 86594375 86594528 -35249328 + GA-rich Low_complexity Low_complexity 4 168 0 2 1245 867 163 14 7 chr11 86594585 86594727 -35249129 + B1_Mur4 SINE Alu 1 143 -7 2 1245 505 312 8 16 chr11 86594773 86594900 -35248956 - RSINE1 SINE B4 -36 129 4 2 1245 231 133 22 0 chr11 86595116 86595161 -35248695 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2 1245 390 42 0 0 chr11 86595207 86595255 -35248601 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1245 422 318 0 9 chr11 86595255 86595366 -35248490 - B1F1 SINE Alu -39 110 1 2 1245 198 395 88 0 chr11 86595368 86595482 -35248374 - MIR SINE MIR -63 145 22 2 1245 35 24 0 0 chr11 86595594 86595636 -35248220 + AT_rich Low_complexity Low_complexity 1 42 0 2 1245 370 225 54 40 chr11 86595654 86595726 -35248130 - RSINE1 SINE B4 -44 121 49 2 1245 660 200 7 56 chr11 86595726 86595878 -35247978 + B3 SINE B2 2 209 -7 2 1245 357 190 0 0 chr11 86595890 86595948 -35247908 - RSINE1 SINE B4 -105 60 3 2 1245 491 207 85 15 chr11 86596630 86596796 -35247060 + L1MC2 LINE L1 4549 4734 -1412 2 1245 267 242 30 20 chr11 86596807 86596908 -35246948 + L1MC2 LINE L1 4835 4936 -1210 2 1245 501 214 58 18 chr11 86596910 86597081 -35246775 + L1MC2 LINE L1 5047 5224 -922 2 1245 793 208 0 32 chr11 86597084 86597238 -35246618 + B1_Mur4 SINE Alu 1 149 -1 2 1245 269 252 232 0 chr11 86597273 86597372 -35246484 - B4 SINE B4 -63 229 108 2 1245 525 206 45 5 chr11 86597283 86597416 -35246440 - PB1D9 SINE Alu -7 143 1 2 1245 434 215 170 44 chr11 86597417 86597646 -35246210 + L1MC2 LINE L1 5705 5962 -382 2 1245 366 290 28 0 chr11 86597991 86598098 -35245758 - PB1D10 SINE Alu -2 115 6 2 1245 32 0 0 0 chr11 86598101 86598133 -35245723 + AT_rich Low_complexity Low_complexity 1 32 0 2 1245 454 346 15 7 chr11 86598155 86598292 -35245564 + RSINE1 SINE B4 24 161 -4 2 1245 1178 41 0 7 chr11 86598699 86598846 -35245010 + B1_Mm SINE Alu 2 147 0 2 1245 241 311 0 0 chr11 86599121 86599182 -35244674 + B4A SINE B4 85 145 -147 2 1245 436 208 14 0 chr11 86599139 86599211 -35244645 + PB1D10 SINE Alu 18 90 -27 2 1245 708 197 29 14 chr11 86599482 86599621 -35244235 - B1_Mur2 SINE Alu -7 142 2 2 1245 817 142 218 6 chr11 86599770 86599926 -35243930 - B2_Mm2 SINE B2 -6 189 1 2 1245 261 0 0 0 chr11 86599946 86599975 -35243881 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 1245 1074 108 0 25 chr11 86599976 86600137 -35243719 - B2_Mm2 SINE B2 -35 160 4 2 1245 697 244 19 13 chr11 86600203 86600357 -35243499 + RSINE1 SINE B4 3 157 -8 2 1245 221 293 0 33 chr11 86600426 86600486 -35243370 - B1_Mus1 SINE Alu -66 82 25 2 1245 247 242 130 11 chr11 86600578 86600670 -35243186 - PB1D7 SINE Alu 0 120 18 2 1245 541 258 17 0 chr11 86600679 86600799 -35243057 + ID_B1 SINE B4 96 217 -7 2 1245 1061 223 45 0 chr11 86600812 86601014 -35242842 + B3 SINE B2 6 216 0 2 1245 1471 60 5 0 chr11 86601081 86601265 -35242591 - B2_Mm1t SINE B2 -7 186 2 2 1245 544 279 22 7 chr11 86601574 86601711 -35242145 + B1_Mur1 SINE Alu 11 149 0 2 1245 408 204 91 0 chr11 86601765 86601853 -35242003 + B1F2 SINE Alu 21 116 -33 2 1245 805 201 15 7 chr11 86601964 86602099 -35241757 + B1_Mur2 SINE Alu 1 136 -13 2 1245 239 0 32 0 chr11 86602099 86602130 -35241726 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2 1245 334 240 46 39 chr11 86602377 86602507 -35241349 + L1MB3 LINE L1 6035 6165 -18 2 1245 562 218 170 48 chr11 86603125 86603313 -35240543 - B3 SINE B2 -5 211 1 2 1245 401 311 109 0 chr11 86603395 86603514 -35240342 + RSINE1 SINE B4 4 135 -30 2 1245 237 98 0 0 chr11 86603517 86603558 -35240298 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1245 1185 55 0 7 chr11 86603657 86603805 -35240051 + B1_Mus2 SINE Alu 1 147 0 2 1245 757 234 69 0 chr11 86603881 86604056 -35239800 + B3 SINE B2 30 216 0 2 1245 27 0 0 0 chr11 86604427 86604454 -35239402 + AT_rich Low_complexity Low_complexity 1 27 0 2 1245 485 295 23 23 chr11 86604454 86604586 -35239270 - B1F SINE Alu -7 142 11 2 1245 198 0 0 0 chr11 86604600 86604622 -35239234 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1245 1253 64 52 12 chr11 86604624 86604797 -35239059 - B2_Mm2 SINE B2 -14 181 2 2 1245 726 273 0 85 chr11 86604818 86604888 -35238968 - B3 SINE B2 -10 206 150 2 1245 324 0 0 0 chr11 86604888 86604924 -35238932 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1245 726 273 0 85 chr11 86604924 86605077 -35238779 - B3 SINE B2 -67 149 2 2 1245 1544 33 52 0 chr11 86605686 86605897 -35237959 + MTA_Mm-int LTR MaLR 876 1097 -1 2 1245 3164 56 5 0 chr11 86605898 86606292 -35237564 + MTA_Mm LTR MaLR 1 396 0 2 1245 536 293 8 0 chr11 86606496 86606629 -35237227 + RSINE1 SINE B4 3 136 -29 2 1245 296 230 262 29 chr11 86606946 86607049 -35236807 - B1_Mur3 SINE Alu -22 127 1 2 1245 222 333 0 0 chr11 86607001 86607055 -35236801 - B4A SINE B4 -159 133 80 2 1245 639 217 10 125 chr11 86607129 86607329 -35236527 + B3A SINE B2 4 180 -18 2 1245 412 243 30 0 chr11 86607576 86607682 -35236174 + PB1D10 SINE Alu 1 112 -8 2 1245 304 326 19 58 chr11 86607946 86608102 -35235754 + B3A SINE B2 49 198 0 2 1245 240 59 0 0 chr11 86608524 86608558 -35235298 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1245 432 0 0 0 chr11 86608558 86608606 -35235250 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1245 636 14 0 0 chr11 86608616 86608689 -35235167 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1245 407 245 10 0 chr11 86608896 86608994 -35234862 + B2_Mm2 SINE B2 1 99 -96 2 1245 1153 82 0 0 chr11 86609005 86609152 -35234704 + B1_Mus1 SINE Alu 2 148 0 2 1245 632 153 200 8 chr11 86609472 86609597 -35234259 + B1_Mur3 SINE Alu 1 149 0 2 1245 468 0 0 0 chr11 86609612 86609664 -35234192 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 2 1245 800 201 129 26 chr11 86609834 86610028 -35233828 - B3 SINE B2 0 216 3 2 1245 350 141 28 35 chr11 86610308 86610414 -35233442 - B2_Mm2 SINE B2 -6 189 47 2 1245 1256 95 6 0 chr11 86610450 86610619 -35233237 - B2_Mm1t SINE B2 -22 171 2 2 1245 468 293 37 84 chr11 86610840 86611030 -35232826 + B3A SINE B2 1 181 -17 2 1245 21 57 0 0 chr11 86611043 86611078 -35232778 + AT_rich Low_complexity Low_complexity 1 35 0 2 1245 261 0 0 0 chr11 86611870 86611899 -35231957 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1245 371 321 36 0 chr11 86612244 86612381 -35231475 - B1F SINE Alu -7 142 1 2 1245 420 261 30 65 chr11 86612642 86612810 -35231046 + RSINE1 SINE B4 4 165 0 2 1245 894 62 0 105 chr11 86613202 86613610 -35230246 + (TCTA)n Simple_repeat Simple_repeat 1 365 0 2 1245 1082 39 0 72 chr11 86613642 86613835 -35230021 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1245 505 263 0 0 chr11 86613835 86613949 -35229907 - B1_Mur1 SINE Alu -10 139 26 2 1245 976 235 19 9 chr11 86613949 86614164 -35229692 - ID_B1 SINE B4 -3 221 5 2 1245 656 167 42 35 chr11 86614181 86614324 -35229532 - B1_Mur1 SINE Alu 0 149 6 2 1245 263 219 39 64 chr11 86614866 86614944 -35228912 + ID4 SINE ID 8 83 0 2 1245 437 257 167 69 chr11 86615011 86615027 -35228829 + L1MB4 LINE L1 5837 5848 -323 2 1245 1390 204 140 13 chr11 86615027 86615399 -35228457 + MTD LTR MaLR 1 419 0 2 1245 615 221 105 69 chr11 86615399 86615687 -35228169 + L1MB4 LINE L1 5849 6178 -2 2 1245 778 256 61 5 chr11 86615713 86615909 -35227947 + B3 SINE B2 1 207 -9 2 1245 383 312 24 39 chr11 86615925 86616074 -35227782 - B3 SINE B2 -6 210 33 3 1245 1114 73 0 0 chr11 86616074 86616210 -35227646 + B1_Mus2 SINE Alu 2 137 -10 3 1245 281 335 45 99 chr11 86616210 86616282 -35227574 - B3 SINE B2 -153 63 2 3 1245 1812 140 15 56 chr11 86616388 86616482 -35227374 + ORR1A3 LTR MaLR 1 91 -235 3 1245 1000 65 71 14 chr11 86616482 86616622 -35227234 - B1_Mus1 SINE Alu 0 148 1 3 1245 1812 140 15 56 chr11 86616622 86616867 -35226989 + ORR1A3 LTR MaLR 92 326 0 3 1245 1044 91 14 0 chr11 86616921 86617064 -35226792 + B1_Mus1 SINE Alu 1 145 -3 3 1245 315 0 0 0 chr11 86617064 86617099 -35226757 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1245 838 240 29 48 chr11 86617157 86617367 -35226489 + B3 SINE B2 1 206 -10 3 1245 189 0 0 0 chr11 86617371 86617392 -35226464 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1245 485 150 0 0 chr11 86617413 86617493 -35226363 - B4 SINE B4 -211 81 2 3 1245 472 281 0 117 chr11 86617545 86617682 -35226174 + B4 SINE B4 171 291 -1 3 1245 524 255 90 0 chr11 86618102 86618247 -35225609 + RSINE1 SINE B4 8 165 0 3 1245 244 268 124 0 chr11 86618376 86618473 -35225383 - PB1 SINE Alu 0 127 19 3 1245 207 0 0 0 chr11 86618776 86618799 -35225057 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1245 454 229 18 18 chr11 86618809 86618920 -35224936 + PB1D9 SINE Alu 10 120 0 3 1245 642 255 68 34 chr11 86618942 86619149 -35224707 - B3 SINE B2 -2 214 1 3 1245 847 122 65 0 chr11 86619326 86619465 -35224391 + B1_Mus1 SINE Alu 1 148 0 3 1245 622 216 16 8 chr11 86619610 86619736 -35224120 - B1_Mur1 SINE Alu -21 128 2 3 1245 302 274 0 14 chr11 86621885 86621959 -35221897 + ID4_ SINE ID 1 73 -10 3 1245 308 308 0 62 chr11 86621974 86622071 -35221785 + PB1D7 SINE Alu 24 114 -6 3 1245 262 241 23 0 chr11 86622084 86622171 -35221685 + GA-rich Low_complexity Low_complexity 2 90 0 3 1245 381 256 12 0 chr11 86622268 86622354 -35221502 - PB1D10 SINE Alu -26 91 5 3 1245 428 237 82 0 chr11 86622923 86623020 -35220836 - B1_Mur1 SINE Alu -23 126 22 3 1245 610 38 0 0 chr11 86623694 86623774 -35220082 + L1Md_T LINE L1 6502 6581 -1 3 1245 692 171 35 14 chr11 86624286 86624428 -35219428 + B1_Mur1 SINE Alu 5 149 0 3 1245 2409 113 181 12 chr11 86625240 86625742 -35218114 - RLTR6_Mm LTR ERV1 -67 587 1 3 1245 19424 104 80 68 chr11 86625742 86629378 -35214478 - MMVL30-int LTR ERV1 0 3698 21 3 1245 2526 113 175 12 chr11 86629378 86629897 -35213959 - RLTR6_Mm LTR ERV1 -50 604 1 3 1245 852 177 0 7 chr11 86630024 86630166 -35213690 - B1_Mur2 SINE Alu -4 145 5 3 1245 345 34 16 33 chr11 86630353 86630414 -35213442 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 3 1245 1169 30 0 0 chr11 86630415 86630550 -35213306 - B1_Mus2 SINE Alu -12 135 1 3 1245 234 232 40 8 chr11 86630621 86630636 -35213220 + ORR1B1-int LTR MaLR 630 648 -861 3 1245 781 123 16 0 chr11 86630636 86630758 -35213098 + B1_Mus1 SINE Alu 1 124 -24 3 1245 500 200 9 0 chr11 86630760 86630875 -35212981 + GA-rich Low_complexity Low_complexity 1 116 0 3 1245 555 301 19 19 chr11 86630973 86631132 -35212724 + RSINE1 SINE B4 5 163 -2 3 1245 326 351 129 52 chr11 86631300 86631687 -35212169 + LTR81C LTR ERV1? 737 1153 0 3 1245 1126 156 12 67 chr11 86631732 86631987 -35211869 - RLTR28B LTR ERVL -41 483 243 3 1245 204 182 0 0 chr11 86631987 86632031 -35211825 + T-rich Low_complexity Low_complexity 1 44 0 3 1245 1285 126 32 59 chr11 86632045 86632298 -35211558 - Lx4B LINE L1 -11 7047 6802 3 1245 1285 118 30 95 chr11 86632309 86632571 -35211285 - RLTR28B LTR ERVL -236 245 1 3 1245 788 218 0 0 chr11 86633947 86634089 -35209767 + B1_Mur2 SINE Alu 1 142 -7 3 1245 327 49 0 0 chr11 86634090 86634131 -35209725 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 3 1245 2033 91 6 59 chr11 86634210 86634548 -35209308 - ORR1A3 LTR MaLR -6 320 1 3 1245 414 222 66 33 chr11 86634564 86634685 -35209171 + L1ME1 LINE L1 6042 6166 -13 3 1245 224 314 0 0 chr11 86635253 86635304 -35208552 + ID4_ SINE ID 22 72 -11 3 1245 1466 78 16 5 chr11 86635341 86635520 -35208336 + B2_Mm2 SINE B2 1 182 -13 3 1245 477 0 0 0 chr11 86635520 86635573 -35208283 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1245 1466 78 16 5 chr11 86635573 86635585 -35208271 + B2_Mm2 SINE B2 183 194 -1 3 1245 1253 41 0 0 chr11 86635589 86635735 -35208121 + B1_Mus2 SINE Alu 2 147 0 3 1245 189 0 0 0 chr11 86635767 86635788 -35208068 + (CAG)n Simple_repeat Simple_repeat 2 22 0 3 1245 470 310 0 53 chr11 86635796 86635946 -35207910 + B4A SINE B4 14 155 -137 3 1245 333 0 0 0 chr11 86635947 86635984 -35207872 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1245 4784 139 32 61 chr11 86636047 86636976 -35206880 + RMER19B LTR ERVK 1 902 0 3 1245 686 188 0 30 chr11 86637141 86637273 -35206583 + B1_Mur4 SINE Alu 20 147 -3 3 1245 205 86 0 28 chr11 86637474 86637510 -35206346 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1245 1129 82 0 0 chr11 86637514 86637661 -35206195 - B1_Mus1 SINE Alu 0 148 2 3 1245 1218 48 7 0 chr11 86637692 86637838 -35206018 + B1_Mus2 SINE Alu 1 147 0 3 1245 884 134 20 27 chr11 86637864 86638010 -35205846 - B1_Mur3 SINE Alu -4 145 1 3 1245 2894 25 0 3 chr11 86638197 86638525 -35205331 + IAPLTR2b LTR ERVK 1 327 0 3 155 444 208 0 0 chr11 86638562 86638639 -35205217 + B1_Mur3 SINE Alu 1 77 -72 3 1246 2038 156 54 18 chr11 86638714 86639105 -35204751 + MTC LTR MaLR 8 412 -9 3 1246 219 180 39 20 chr11 86639225 86639276 -35204580 - PB1D7 SINE Alu -1 119 68 3 1246 259 193 0 17 chr11 86639762 86639820 -35204036 + B1_Mus2 SINE Alu 91 147 0 3 1246 3324 36 10 0 chr11 86639876 86640268 -35203588 - MTA_Mm LTR MaLR 0 396 1 3 1246 297 267 11 11 chr11 86640293 86640308 -35203548 - ID_B1 SINE B4 -41 183 93 3 1246 306 253 0 13 chr11 86640308 86640384 -35203472 - PB1D10 SINE Alu -31 86 12 3 1246 306 125 0 0 chr11 86640443 86640491 -35203365 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1246 1208 61 0 0 chr11 86640491 86640638 -35203218 - B1_Mus2 SINE Alu 0 147 1 3 1246 1193 171 54 0 chr11 86640688 86640893 -35202963 - B3 SINE B2 0 216 1 3 1246 593 183 114 8 chr11 86640918 86640943 -35202913 - B1_Mur2 SINE Alu -2 147 121 3 1246 294 29 0 0 chr11 86640943 86640978 -35202878 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1246 593 183 114 8 chr11 86640978 86641084 -35202772 - B1_Mur2 SINE Alu -29 120 2 3 1246 714 143 15 45 chr11 86641116 86641248 -35202608 - B1_Mur4 SINE Alu -4 146 19 3 1246 522 160 0 0 chr11 86641266 86641397 -35202459 + GA-rich Low_complexity Low_complexity 2 132 0 3 1246 309 339 33 77 chr11 86641460 86641642 -35202214 - B4A SINE B4 -118 174 1 3 1246 350 230 62 75 chr11 86641691 86641837 -35202019 - ID_B1 SINE B4 0 224 81 3 1246 432 247 10 0 chr11 86641854 86641951 -35201905 - PB1D10 SINE Alu -17 100 3 3 1246 216 0 0 0 chr11 86642473 86642497 -35201359 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 1246 2521 68 3 58 chr11 86642618 86642964 -35200892 - ORR1A2 LTR MaLR 0 327 1 3 1246 411 73 0 0 chr11 86643054 86643109 -35200747 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1246 731 77 7 41 chr11 86643109 86643238 -35200618 - B1_Mus2 SINE Alu -1 146 20 3 1246 833 257 11 0 chr11 86643241 86643420 -35200436 + ID_B1 SINE B4 27 207 -17 3 1246 234 128 0 0 chr11 86643420 86643459 -35200397 + (TTCG)n Simple_repeat Simple_repeat 3 41 0 3 1246 1387 90 5 21 chr11 86643514 86643707 -35200149 - B2_Mm1a SINE B2 -2 191 2 3 1246 477 224 26 8 chr11 86643707 86643824 -35200032 + ID_B1 SINE B4 106 224 0 3 1246 419 80 159 14 chr11 86644542 86644657 -35199199 - B2_Mm2 SINE B2 -2 193 46 3 1246 1355 73 11 0 chr11 86644684 86644861 -35198995 - B2_Mm1t SINE B2 -14 179 1 3 1246 390 288 106 0 chr11 86644896 86645028 -35198828 - RSINE1 SINE B4 -7 158 13 3 1246 916 288 21 3 chr11 86645203 86645489 -35198367 - B4A SINE B4 -1 291 1 3 1246 553 241 42 7 chr11 86645503 86645645 -35198211 - B1F2 SINE Alu -1 148 2 3 1246 365 324 0 0 chr11 86645657 86645762 -35198094 - PB1D10 SINE Alu -9 108 4 3 1246 1104 89 0 20 chr11 86645779 86645928 -35197928 + B1_Mus1 SINE Alu 1 146 -2 3 1246 30 0 0 0 chr11 86645929 86645959 -35197897 + AT_rich Low_complexity Low_complexity 1 30 0 3 1246 585 254 7 47 chr11 86646010 86646159 -35197697 + RSINE1 SINE B4 5 147 -18 3 1246 270 0 0 0 chr11 86646160 86646190 -35197666 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1246 261 287 39 29 chr11 86646229 86646333 -35197523 + PB1D10 SINE Alu 1 105 -12 3 1246 324 232 0 0 chr11 86646960 86647029 -35196827 - ID4_ SINE ID -1 82 14 3 1246 243 0 0 0 chr11 86647091 86647118 -35196738 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1246 245 295 10 83 chr11 86647129 86647225 -35196631 - B1F SINE Alu -51 98 10 3 1246 653 237 18 60 chr11 86647250 86647416 -35196440 + RSINE1 SINE B4 7 165 0 3 1246 298 194 0 56 chr11 86647483 86647554 -35196302 - ID_B1 SINE B4 0 224 158 3 1246 1160 95 0 0 chr11 86647902 86648050 -35195806 + B1_Mus1 SINE Alu 1 148 0 3 1246 660 265 27 36 chr11 86648213 86648432 -35195424 - ID_B1 SINE B4 -6 218 2 3 1246 506 145 6 8 chr11 86648540 86648640 -35195216 + B1_Mus2 SINE Alu 44 142 -7 3 1246 279 276 133 56 chr11 86648854 86649050 -35194806 - MER90 LTR ERV1 -360 215 5 3 1246 646 306 20 25 chr11 86649186 86649390 -35194466 - ID_B1 SINE B4 -15 209 7 4 1246 883 196 138 0 chr11 86649410 86649599 -35194257 - B3 SINE B2 0 216 2 4 1246 630 168 0 26 chr11 86649649 86649765 -35194091 - B1_Mur1 SINE Alu 0 149 37 4 1246 283 258 128 159 chr11 86649659 86649885 -35193971 - B4 SINE B4 -73 219 1 4 1246 611 267 0 27 chr11 86650396 86650546 -35193310 + ID_B1 SINE B4 72 217 -7 4 1246 795 268 54 0 chr11 86650553 86650758 -35193098 + B3 SINE B2 1 216 0 4 1246 34 42 0 0 chr11 86650810 86650858 -35192998 + AT_rich Low_complexity Low_complexity 1 48 0 4 1246 645 266 65 36 chr11 86650862 86651195 -35192661 + L1MB4 LINE L1 5504 5858 -325 4 1246 213 39 0 0 chr11 86651542 86651568 -35192288 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1246 1426 83 5 10 chr11 86651604 86651798 -35192058 - B2_Mm2 SINE B2 -1 194 2 4 1246 419 167 77 0 chr11 86651821 86651899 -35191957 - B1_Mur3 SINE Alu -63 86 3 4 1246 282 212 33 110 chr11 86651997 86652109 -35191747 + B1F2 SINE Alu 21 120 -29 4 1246 573 15 0 0 chr11 86652123 86652189 -35191667 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1246 252 0 0 0 chr11 86652227 86652255 -35191601 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1246 277 211 20 6 chr11 86652256 86652315 -35191541 + ID4 SINE ID 32 89 -63 4 1246 294 248 53 71 chr11 86652566 86652679 -35191177 + PB1D10 SINE Alu 1 111 -6 4 1246 339 85 0 0 chr11 86653882 86653929 -35189927 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 4 1246 636 177 109 31 chr11 86654647 86654775 -35189081 - B1F SINE Alu -11 138 1 4 1246 23 33 0 0 chr11 86655128 86655158 -35188698 + AT_rich Low_complexity Low_complexity 1 30 0 4 1246 317 215 0 0 chr11 86655198 86655263 -35188593 - RSINE1 SINE B4 -40 125 61 4 1246 180 0 0 0 chr11 86655267 86655287 -35188569 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 4 1246 320 109 0 52 chr11 86655309 86655367 -35188489 - B2_Mm2 SINE B2 -94 101 47 4 1246 1258 97 17 0 chr11 86655402 86655577 -35188279 - B2_Mm1t SINE B2 -14 179 2 4 1246 310 239 15 0 chr11 86655577 86655644 -35188212 - RSINE1 SINE B4 -87 78 11 4 1246 388 289 11 0 chr11 86655709 86655799 -35188057 + PB1D10 SINE Alu 1 91 -26 4 1246 21 36 0 0 chr11 86655887 86655915 -35187941 + AT_rich Low_complexity Low_complexity 1 28 0 4 1246 769 160 0 15 chr11 86655943 86656076 -35187780 - B1_Mur1 SINE Alu -5 144 14 4 1246 181 340 0 0 chr11 86656117 86656170 -35187686 - L2a LINE L2 -18 3408 3356 4 1246 466 265 194 26 chr11 86656338 86656493 -35187363 + B3A SINE B2 1 181 -17 4 1246 288 154 0 0 chr11 86656498 86656550 -35187306 + (CATA)n Simple_repeat Simple_repeat 3 54 0 4 1246 1726 21 0 0 chr11 86656934 86657126 -35186730 - B2_Mm1t SINE B2 0 193 2 4 1246 432 256 91 0 chr11 86657399 86657520 -35186336 - ID_B1 SINE B4 -9 215 84 4 1246 230 317 13 107 chr11 86657644 86657803 -35186053 + MIRb SINE MIR 91 234 -34 4 1246 869 239 24 19 chr11 86657826 86658035 -35185821 - B3 SINE B2 -5 211 2 4 1246 986 164 39 86 chr11 86658060 86658294 -35185562 + URR1B DNA MER1_type 2 224 -1 4 1246 1097 96 0 0 chr11 86658334 86658490 -35185366 + B2_Mm2 SINE B2 2 157 -38 4 1246 1188 41 0 20 chr11 86658510 86658658 -35185198 - B1_Mm SINE Alu 0 147 3 4 1246 369 0 0 0 chr11 86658779 86658820 -35185036 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 1246 755 171 7 20 chr11 86658844 86658999 -35184857 + B1_Mur3 SINE Alu 4 149 -1 4 1246 3045 18 0 0 chr11 86659144 86659481 -35184375 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1246 24999 33 36 13 chr11 86659481 86662481 -35181375 + IAPEz-int LTR ERVK 3 3071 -3410 4 1246 7427 29 2 6 chr11 86662466 86663322 -35180534 + IAPEz-int LTR ERVK 5629 6481 0 4 1246 3045 18 0 0 chr11 86663322 86663659 -35180197 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1246 256 284 15 0 chr11 86663695 86663762 -35180094 + RSINE1 SINE B4 57 124 -41 4 1246 513 84 0 0 chr11 86663768 86663839 -35180017 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1246 637 255 51 41 chr11 86664461 86664657 -35179199 + B3A SINE B2 1 198 0 4 1246 432 55 0 0 chr11 86665435 86665490 -35178366 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1246 375 218 119 68 chr11 86666808 86666926 -35176930 + ID_B1 SINE B4 89 212 -12 4 1246 1414 62 0 40 chr11 86666934 86667135 -35176721 - B2_Mm2 SINE B2 0 195 3 4 1246 232 252 92 164 chr11 86667135 86667161 -35176695 + B1_Mur4 SINE Alu 126 150 0 4 1246 425 317 60 85 chr11 86667817 86668169 -35175687 - L2c LINE L2 -65 3322 2980 4 1246 276 238 341 22 chr11 86668391 86668529 -35175327 - B3A SINE B2 -16 182 1 4 1246 342 326 10 0 chr11 86668615 86668713 -35175143 + PB1D10 SINE Alu 19 117 0 4 1246 694 244 48 17 chr11 86668715 86668902 -35174954 + B3 SINE B2 2 198 0 4 1246 836 55 0 9 chr11 86668907 86669008 -35174848 + B1_Mus2 SINE Alu 39 139 -8 4 1246 206 32 32 0 chr11 86669008 86669039 -35174817 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1246 276 353 17 8 chr11 86669285 86669405 -35174451 - L2c LINE L2 -993 2426 2306 4 1246 574 180 20 0 chr11 86670158 86670258 -35173598 + B1_Mur2 SINE Alu 1 102 -47 4 1246 309 293 55 0 chr11 86670333 86670433 -35173423 + B1F SINE Alu 16 120 -29 4 1246 462 361 21 0 chr11 86670456 86670600 -35173256 + ID_B1 SINE B4 78 224 0 4 1246 752 264 19 0 chr11 86670668 86670827 -35173029 + RSINE1 SINE B4 2 163 -2 4 1246 24 0 0 0 chr11 86670838 86670862 -35172994 + AT_rich Low_complexity Low_complexity 1 24 0 4 1246 625 221 0 64 chr11 86670988 86671128 -35172728 - B1_Mur2 SINE Alu 0 149 19 4 1246 564 230 17 17 chr11 86671133 86671248 -35172608 - B1_Mur2 SINE Alu -2 147 33 4 1246 757 208 0 0 chr11 86671250 86671380 -35172476 - ID_B1 SINE B4 -2 222 93 4 1246 317 324 20 52 chr11 86671253 86671406 -35172450 + YREP_Mm Unknown Unknown 181 328 -1484 4 1246 259 263 94 10 chr11 86671512 86671608 -35172248 + Lx8 LINE L1 7149 7252 -221 4 1246 583 282 60 66 chr11 86671818 86672000 -35171856 + B3A SINE B2 1 181 -17 4 1246 1152 174 14 18 chr11 86672066 86672283 -35171573 - B3 SINE B2 0 216 1 4 1246 803 149 0 54 chr11 86672323 86672472 -35171384 + B1_Mur2 SINE Alu 1 141 -8 4 1246 1376 241 129 45 chr11 86672623 86673066 -35170790 - RMER5 LTR ERV1 -22 512 33 4 1246 576 290 13 6 chr11 86673138 86673294 -35170562 + RSINE1 SINE B4 3 159 -6 4 1246 901 209 48 34 chr11 86674063 86674271 -35169585 - B3 SINE B2 -5 211 1 4 1246 1706 169 36 122 chr11 86674478 86674897 -35168959 + ORR1C2 LTR MaLR 2 384 0 4 1246 298 290 0 0 chr11 86674982 86675051 -35168805 + ID4_ SINE ID 4 72 -11 4 1246 1347 106 16 0 chr11 86675907 86676096 -35167760 + B2_Mm2 SINE B2 1 192 -3 4 1246 186 143 0 0 chr11 86676135 86676170 -35167686 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1246 1279 20 0 7 chr11 86676171 86676318 -35167538 - B1_Mus1 SINE Alu -1 147 2 4 1246 25 31 0 0 chr11 86676540 86676572 -35167284 + AT_rich Low_complexity Low_complexity 1 32 0 4 1246 627 121 43 0 chr11 86676967 86677107 -35166749 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 4 1246 1290 246 27 0 chr11 86677142 86677402 -35166454 - B4A SINE B4 -25 267 1 4 1246 506 186 9 47 chr11 86677495 86677602 -35166254 + PB1D10 SINE Alu 14 116 -1 4 1246 697 206 199 34 chr11 86677605 86677781 -35166075 + B3 SINE B2 5 209 -7 4 1246 331 229 35 46 chr11 86677840 86677892 -35165964 + HAL1-3A_ME LINE L1 1927 1978 -880 4 1246 682 268 10 77 chr11 86677892 86678086 -35165770 + B3A SINE B2 2 182 -16 4 1246 331 229 35 46 chr11 86678086 86678120 -35165736 + HAL1-3A_ME LINE L1 1979 2012 -846 4 1246 234 128 0 0 chr11 86678121 86678160 -35165696 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 4 1246 490 247 11 2 chr11 86678185 86678286 -35165570 + PB1D10 SINE Alu 8 106 -11 4 1246 682 155 0 0 chr11 86678484 86678587 -35165269 + B1_Mur1 SINE Alu 33 135 -14 4 1246 275 259 165 9 chr11 86678658 86678767 -35165089 + B3 SINE B2 91 216 0 4 1246 1286 41 0 0 chr11 86678786 86678933 -35164923 - B1_Mus2 SINE Alu 0 147 1 4 1246 1466 55 11 0 chr11 86678974 86679155 -35164701 + B2_Mm2 SINE B2 5 187 -8 4 1246 436 326 7 14 chr11 86679180 86679320 -35164536 + RSINE1 SINE B4 12 150 -15 4 1246 275 200 65 26 chr11 86679385 86679462 -35164394 + PB1D10 SINE Alu 32 111 -6 4 1246 27 0 0 0 chr11 86680313 86680340 -35163516 + AT_rich Low_complexity Low_complexity 1 27 0 4 1246 763 165 52 15 chr11 86680341 86680476 -35163380 - B1F SINE Alu -8 141 2 4 1246 319 302 30 30 chr11 86680997 86681096 -35162760 + B3 SINE B2 73 171 -45 4 1246 292 155 0 49 chr11 86682319 86682380 -35161476 + MIR SINE MIR 59 120 -148 4 1246 252 0 0 0 chr11 86682406 86682434 -35161422 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 4 1246 281 261 33 33 chr11 86682470 86682561 -35161295 + MIR SINE MIR 2 92 -170 4 1246 225 296 0 53 chr11 86682857 86682932 -35160924 - PB1D10 SINE Alu -22 95 25 4 1246 447 290 278 0 chr11 86683018 86683180 -35160676 - ID_B1 SINE B4 -12 212 6 4 1246 219 216 118 26 chr11 86683547 86683623 -35160233 + L2c LINE L2 3305 3387 0 4 1246 478 258 0 90 chr11 86683626 86683771 -35160085 + RSINE1 SINE B4 2 133 -32 4 1246 631 224 45 26 chr11 86683770 86683926 -35159930 + B3 SINE B2 58 216 0 4 1246 620 189 60 45 chr11 86683970 86684103 -35159753 + B4A SINE B4 2 136 -156 4 1246 233 252 138 0 chr11 86684468 86684546 -35159310 + MIR SINE MIR 110 201 -67 4 1246 604 210 186 11 chr11 86684909 86685092 -35158764 + B3 SINE B2 2 216 0 5 1246 278 260 88 88 chr11 86685129 86685209 -35158647 + ID4 SINE ID 4 83 0 5 1246 688 293 132 31 chr11 86685457 86685893 -35157963 + MER77 LTR ERVL 55 490 -73 5 1246 964 207 36 63 chr11 86685899 86686121 -35157735 + B3 SINE B2 1 216 0 5 1246 971 275 70 0 chr11 86687254 86687527 -35156329 - MLT1C LTR MaLR -3 464 173 5 1246 1221 195 0 10 chr11 86687542 86687749 -35156107 - B3 SINE B2 0 216 12 5 1246 300 312 21 0 chr11 86687783 86687876 -35155980 - MLT1C LTR MaLR -353 114 20 5 1246 506 267 0 8 chr11 86687938 86688055 -35155801 - PB1D10 SINE Alu 0 117 2 5 1246 331 263 26 0 chr11 86688252 86688328 -35155528 - ID4_ SINE ID -3 80 3 5 1246 273 333 40 32 chr11 86688716 86688840 -35155016 + MIRb SINE MIR 116 240 -28 5 1246 308 232 0 0 chr11 86688991 86689047 -35154809 + ID_B1 SINE B4 132 187 -37 5 1246 273 172 26 158 chr11 86689047 86689067 -35154789 + PB1D10 SINE Alu 51 116 -1 5 1246 1007 263 34 4 chr11 86689086 86689308 -35154548 + B4A SINE B4 4 232 -60 5 1246 815 198 61 143 chr11 86689308 86689503 -35154353 + B3 SINE B2 1 184 -32 5 1246 225 65 0 0 chr11 86689503 86689534 -35154322 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1246 815 198 61 143 chr11 86689534 86689568 -35154288 + B3 SINE B2 185 211 -5 5 1246 286 233 123 0 chr11 86690418 86690491 -35153365 - ID4 SINE ID -1 82 1 5 1246 873 144 20 33 chr11 86690606 86690757 -35153099 + B1_Mur3 SINE Alu 1 149 0 5 1246 462 261 84 8 chr11 86690843 86690974 -35152882 - ID_B1 SINE B4 -82 142 2 5 1246 707 133 5 36 chr11 86691012 86691176 -35152680 + B2_Mm1t SINE B2 44 195 0 5 1246 317 309 21 0 chr11 86691272 86691369 -35152487 + PB1D10 SINE Alu 3 101 -16 5 1246 339 254 25 7 chr11 86691532 86691628 -35152228 + ID4_ SINE ID 6 100 -52 5 1246 1394 74 11 5 chr11 86691688 86691879 -35151977 - B2_Mm1a SINE B2 -1 192 1 5 1246 530 250 28 84 chr11 86691921 86692100 -35151756 - B3A SINE B2 -5 193 25 5 1246 469 213 143 45 chr11 86692298 86692431 -35151425 - B1F SINE Alu -3 146 1 5 1246 392 171 12 0 chr11 86692435 86692517 -35151339 + CT-rich Low_complexity Low_complexity 2 84 0 5 1246 466 208 10 10 chr11 86693432 86693444 -35150412 + ID SINE ID 72 83 -141 5 1246 323 307 13 81 chr11 86693444 86693593 -35150263 + B1_Mm SINE Alu 4 142 -5 5 1246 400 247 0 0 chr11 86693719 86693808 -35150048 - B1F1 SINE Alu -41 108 20 5 1246 24 0 0 0 chr11 86693939 86693963 -35149893 + AT_rich Low_complexity Low_complexity 1 24 0 5 1246 649 163 22 89 chr11 86693966 86694101 -35149755 + B3A SINE B2 2 127 -71 5 1246 258 273 65 0 chr11 86694537 86694614 -35149242 - ID4_ SINE ID 0 83 2 5 1246 311 230 200 0 chr11 86694744 86694844 -35149012 + B1F2 SINE Alu 30 149 0 5 1246 390 218 80 11 chr11 86694757 86694845 -35149011 + ID_B1 SINE B4 131 224 0 5 1246 1142 80 0 0 chr11 86694872 86695010 -35148846 + B1_Mus2 SINE Alu 1 138 -9 5 1246 314 311 0 82 chr11 86695109 86695207 -35148649 + B1_Mur2 SINE Alu 9 98 -51 5 1246 432 0 0 0 chr11 86695214 86695262 -35148594 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 1246 786 237 40 40 chr11 86695272 86695452 -35148404 + B3A SINE B2 1 183 -15 5 1246 396 40 0 0 chr11 86695452 86695502 -35148354 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1246 786 237 40 40 chr11 86695502 86695519 -35148337 + B3A SINE B2 184 198 0 5 1246 968 139 195 27 chr11 86695570 86695755 -35148101 + B3 SINE B2 1 216 0 5 1246 6749 18 1 0 chr11 86695817 86696558 -35147298 + RLTR4_Mm LTR ERV1 1 742 0 5 1246 65128 15 6 0 chr11 86696558 86704117 -35139739 + RLTR4_MM-int LTR ERV1 1 7601 0 5 1246 6749 18 1 0 chr11 86704117 86704858 -35138998 + RLTR4_Mm LTR ERV1 1 742 0 5 1246 871 179 72 139 chr11 86705175 86705343 -35138513 + B3A SINE B2 2 163 -32 5 1246 423 56 0 0 chr11 86705343 86705397 -35138459 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1246 640 179 72 139 chr11 86705397 86705436 -35138420 + B2_Mm2 SINE B2 164 195 0 5 1246 24 67 0 0 chr11 86705448 86705493 -35138363 + AT_rich Low_complexity Low_complexity 1 45 0 5 1246 1002 74 14 69 chr11 86705504 86705649 -35138207 - B1_Mm SINE Alu -9 138 2 5 1246 699 186 0 39 chr11 86706119 86706248 -35137608 + B1_Mus2 SINE Alu 3 126 -21 5 1246 487 254 88 0 chr11 86706329 86706443 -35137413 - PB1 SINE Alu -2 125 2 5 1246 225 0 0 0 chr11 86706484 86706509 -35137347 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1246 561 349 25 128 chr11 86706714 86707072 -35136784 + MER102b DNA MER1_type 18 338 -3 5 1246 675 171 81 8 chr11 86707175 86707299 -35136557 + B1F2 SINE Alu 4 136 -13 5 1246 576 0 0 0 chr11 86707300 86707364 -35136492 + (GGA)n Simple_repeat Simple_repeat 1 64 0 5 1246 593 283 7 7 chr11 86708181 86708327 -35135529 - ID_B1 SINE B4 0 224 79 5 1246 611 203 21 86 chr11 86708499 86708639 -35135217 + ID_B1 SINE B4 82 212 -12 5 1246 249 33 0 0 chr11 86709187 86709217 -35134639 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1246 249 206 78 157 chr11 86709365 86709480 -35134376 + MT2B LTR ERVL 160 265 -336 5 1246 683 196 67 8 chr11 86709377 86709511 -35134345 + B1F1 SINE Alu 7 148 -1 5 1246 271 238 107 48 chr11 86709554 86709638 -35134218 + ID_B1 SINE B4 118 206 -18 5 1246 284 208 12 83 chr11 86709848 86709932 -35133924 + RSINE1 SINE B4 86 163 -2 5 1246 740 150 0 24 chr11 86709945 86710068 -35133788 - B1_Mur1 SINE Alu -8 141 22 5 1246 269 228 62 124 chr11 86709946 86710091 -35133765 + YREP_Mm Unknown Unknown 186 321 -1491 5 1246 23 0 0 0 chr11 86710115 86710138 -35133718 + AT_rich Low_complexity Low_complexity 1 23 0 5 1246 218 255 186 39 chr11 86710167 86710269 -35133587 + PB1D10 SINE Alu 1 117 0 5 1246 468 0 0 0 chr11 86710278 86710330 -35133526 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1246 426 288 45 8 chr11 86710374 86710507 -35133349 + B1F SINE Alu 1 138 -11 5 1246 255 189 0 0 chr11 86710748 86710801 -35133055 + GA-rich Low_complexity Low_complexity 2 54 0 5 1246 318 26 0 0 chr11 86711500 86711539 -35132317 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1246 1062 226 58 68 chr11 86711579 86711874 -35131982 - B4A SINE B4 0 292 1 5 1246 242 258 16 16 chr11 86712560 86712623 -35131233 - PB1D10 SINE Alu -27 90 28 5 1246 402 255 0 54 chr11 86712618 86712730 -35131126 + B1F1 SINE Alu 6 111 -38 5 1246 286 287 168 7 chr11 86712788 86712925 -35130931 + L1M3 LINE L1 5711 5869 -314 5 1246 249 259 61 0 chr11 86712965 86713096 -35130760 + ORR1B1-int LTR MaLR 616 754 -755 5 1246 961 108 0 7 chr11 86712997 86713137 -35130719 + B1_Mus2 SINE Alu 9 147 0 5 1246 403 296 0 0 chr11 86713279 86713367 -35130489 + ID_B1 SINE B4 82 169 -55 5 1246 2575 160 131 55 chr11 86713368 86714152 -35129704 + RMER19B LTR ERVK 1 886 -16 5 1246 1410 85 11 5 chr11 86714152 86714342 -35129514 + B2_Mm1t SINE B2 1 191 -2 5 1246 566 209 117 72 chr11 86714342 86714366 -35129490 + RMER19C LTR ERVK 588 611 0 5 1246 698 253 20 0 chr11 86714445 86714595 -35129261 + B3A SINE B2 4 156 -42 5 1246 836 160 34 34 chr11 86714624 86714773 -35129083 + B1_Mur2 SINE Alu 1 149 0 5 1246 556 230 15 20 chr11 86714788 86714941 -35128915 + B1F SINE Alu 1 149 0 5 1246 347 259 0 36 chr11 86714942 86715026 -35128830 + ID4_ SINE ID 2 82 -1 5 1246 31 44 0 0 chr11 86715026 86715071 -35128785 + AT_rich Low_complexity Low_complexity 1 45 0 5 1246 352 348 18 42 chr11 86715183 86715348 -35128508 - MER5A1 DNA MER1_type 0 166 6 5 1246 341 247 169 0 chr11 86715525 86715614 -35128242 + PB1D10 SINE Alu 6 109 -8 5 1246 250 250 0 56 chr11 86715623 86715695 -35128161 + ID4 SINE ID 5 72 -11 5 1246 1238 193 14 0 chr11 86715905 86716112 -35127744 - B3 SINE B2 -5 211 2 5 1246 447 209 108 9 chr11 86716156 86716267 -35127589 + RSINE1 SINE B4 9 130 -35 5 1246 210 143 0 0 chr11 86716292 86716327 -35127529 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 5 1246 232 270 95 0 chr11 86716327 86716390 -35127466 - ID4_ SINE ID -11 72 4 5 1246 196 121 0 49 chr11 86716580 86716641 -35127215 + T-rich Low_complexity Low_complexity 4 61 0 5 1246 753 218 14 0 chr11 86716687 86716829 -35127027 - B1_Mur2 SINE Alu -5 144 1 5 1246 869 59 219 0 chr11 86716893 86717012 -35126844 - B1_Mus2 SINE Alu -2 145 1 5 1246 623 183 153 0 chr11 86717411 86717542 -35126314 - RLTR11A LTR ERVK -12 516 366 5 1246 796 116 212 0 chr11 86717542 86717688 -35126168 + B2_Mm1t SINE B2 3 179 -14 5 1246 305 169 308 51 chr11 86717702 86717819 -35126037 + B2_Mm2 SINE B2 47 193 -2 5 1246 1432 165 94 11 chr11 86717815 86718132 -35125724 - RLTR11A LTR ERVK -148 380 5 5 1246 515 273 31 0 chr11 86718136 86718264 -35125592 - ID_B1 SINE B4 -19 205 74 5 1246 279 0 0 0 chr11 86718748 86718779 -35125077 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1246 619 253 71 56 chr11 86718780 86718977 -35124879 - ID_B1 SINE B4 -6 218 19 5 1246 405 336 28 49 chr11 86719309 86719345 -35124511 + B4 SINE B4 58 90 -202 5 1246 662 198 0 0 chr11 86719345 86719456 -35124400 + B1_Mur1 SINE Alu 2 112 -37 5 1246 30 0 0 0 chr11 86719471 86719501 -35124355 + AT_rich Low_complexity Low_complexity 1 30 0 5 1246 1370 77 28 0 chr11 86719506 86719688 -35124168 + B2_Mm2 SINE B2 1 187 -8 5 1246 1186 82 0 0 chr11 86719697 86719844 -35124012 + B1_Mm SINE Alu 1 147 0 5 1246 38 0 0 0 chr11 86719844 86719882 -35123974 + AT_rich Low_complexity Low_complexity 1 38 0 6 1246 523 288 20 33 chr11 86719906 86720057 -35123799 - B3A SINE B2 -29 169 21 6 1246 485 178 11 22 chr11 86720183 86720275 -35123581 - PB1D10 SINE Alu -26 91 1 6 1246 268 299 18 36 chr11 86721081 86721192 -35122664 - B1F1 SINE Alu -29 120 12 6 1246 278 26 26 0 chr11 86721207 86721246 -35122610 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1246 226 0 59 0 chr11 86721264 86721298 -35122558 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1246 1012 90 15 0 chr11 86721298 86721431 -35122425 - B1_Mus1 SINE Alu -13 135 1 6 1246 3079 135 74 8 chr11 86721440 86721964 -35121892 - Lx4A LINE L1 -1 7057 6499 6 1246 621 129 14 0 chr11 86721965 86722072 -35121784 - L1_Mur2 LINE L1 -6328 384 291 6 1246 22 70 0 0 chr11 86722085 86722128 -35121728 + AT_rich Low_complexity Low_complexity 1 43 0 6 1246 750 184 14 49 chr11 86722130 86722273 -35121583 - B1_Mur4 SINE Alu 0 150 13 6 1246 609 305 7 0 chr11 86722935 86723089 -35120767 + ID_B1 SINE B4 69 223 -1 6 1246 381 201 58 0 chr11 86723267 86723357 -35120499 - B1_Mur1 SINE Alu -9 140 42 6 1246 405 0 0 0 chr11 86723357 86723402 -35120454 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1246 506 253 50 29 chr11 86723534 86723687 -35120169 + B4 SINE B4 1 154 -70 6 1246 803 134 89 7 chr11 86723698 86723833 -35120023 + B1_Mus2 SINE Alu 1 146 -1 6 1246 240 283 55 92 chr11 86724060 86724169 -35119687 - ID4 SINE ID -46 106 2 6 1246 414 243 18 61 chr11 86724182 86724296 -35119560 - PB1 SINE Alu -2 125 17 6 1246 292 173 19 0 chr11 86724433 86724485 -35119371 - MTD LTR MaLR -363 56 4 6 1246 1239 247 64 31 chr11 86724564 86724875 -35118981 + MTE2b LTR MaLR 9 332 -47 6 1246 1127 202 5 29 chr11 86724875 86725084 -35118772 - B3 SINE B2 -11 205 2 6 1246 1239 247 64 31 chr11 86725084 86725131 -35118725 + MTE2b LTR MaLR 333 379 0 6 1246 879 146 60 0 chr11 86725138 86725289 -35118567 - URR1A DNA MER1_type -66 160 1 6 1246 4999 72 46 36 chr11 86725462 86726206 -35117650 + RMER17A LTR ERVK 1 751 0 6 1246 416 286 105 40 chr11 86726540 86726740 -35117116 - LTR79 LTR ERVL 0 527 315 6 1246 386 265 98 46 chr11 86726780 86726954 -35116902 - LTR79 LTR ERVL -314 213 31 6 1246 647 227 0 15 chr11 86726968 86727102 -35116754 + ID_B1 SINE B4 93 224 0 6 1246 367 276 123 23 chr11 86727120 86727250 -35116606 + B1F1 SINE Alu 1 143 -6 6 1246 380 176 25 63 chr11 86727173 86727252 -35116604 + ID_B1 SINE B4 145 220 -4 6 1246 299 342 96 70 chr11 86727508 86727665 -35116191 + RSINE1 SINE B4 5 165 0 6 1246 629 198 18 0 chr11 86727722 86727833 -35116023 + PB1D9 SINE Alu 3 115 -5 6 1246 763 255 51 56 chr11 86728264 86728480 -35115376 - ID_B1 SINE B4 -3 221 7 6 1246 252 290 116 0 chr11 86728503 86728572 -35115284 - ID4_ SINE ID -1 82 6 6 1246 761 171 54 48 chr11 86728602 86728749 -35115107 - B1_Mur1 SINE Alu 0 149 2 6 1246 636 241 111 0 chr11 86728793 86728955 -35114901 - B3A SINE B2 -18 180 1 6 1246 397 238 0 0 chr11 86729488 86729568 -35114288 + PB1D10 SINE Alu 1 80 -37 6 1246 1108 181 5 55 chr11 86731159 86731376 -35112480 - B3 SINE B2 -10 206 1 6 1246 1553 39 16 0 chr11 86731437 86731619 -35112237 + B2_Mm2 SINE B2 2 186 -9 6 1246 253 200 60 0 chr11 86731698 86731748 -35112108 - PB1D7 SINE Alu -3 117 65 6 1246 813 194 8 7 chr11 86731705 86731849 -35112007 - ID_B1 SINE B4 -76 216 71 6 1246 4980 84 6 1 chr11 86731882 86732552 -35111304 + L1_Mus3 LINE L1 5959 6631 -7 6 1246 264 306 64 9 chr11 86732641 86732750 -35111106 + B1F1 SINE Alu 14 128 -21 6 1246 416 67 17 0 chr11 86732757 86732817 -35111039 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 6 1246 238 217 22 0 chr11 86732827 86732873 -35110983 + ID4_ SINE ID 1 47 -36 6 1246 237 263 33 50 chr11 86732833 86732893 -35110963 + tRNA-Ala-GCY_ tRNA tRNA 2 60 -15 6 1246 213 226 0 0 chr11 86733077 86733130 -35110726 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1246 198 0 0 0 chr11 86734573 86734595 -35109261 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1246 213 39 0 0 chr11 86734670 86734696 -35109160 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1246 575 266 14 0 chr11 86735230 86735373 -35108483 + B1_Mur1 SINE Alu 2 146 -3 6 1246 759 226 0 7 chr11 86735620 86735767 -35108089 - B1_Mur1 SINE Alu -2 147 2 6 1246 634 221 31 8 chr11 86735850 86735978 -35107878 - B1F SINE Alu -18 131 1 6 1246 242 367 9 35 chr11 86736725 86736838 -35107018 + MIRb SINE MIR 88 197 -71 6 1246 601 164 188 8 chr11 86736912 86737029 -35106827 + B1F SINE Alu 1 138 -11 6 1246 269 238 31 16 chr11 86737534 86737546 -35106310 + ID SINE ID 72 84 -140 6 1246 461 202 20 41 chr11 86737546 86737644 -35106212 + PB1D9 SINE Alu 4 99 -21 6 1246 246 95 0 0 chr11 86737647 86737689 -35106167 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1246 1193 96 0 0 chr11 86737766 86737923 -35105933 + B2_Mm2 SINE B2 1 157 -38 6 1246 284 0 28 0 chr11 86737923 86737959 -35105897 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 6 1246 558 242 102 0 chr11 86737968 86738096 -35105760 + B1_Mur1 SINE Alu 2 142 -7 6 1246 214 185 103 44 chr11 86738300 86738368 -35105488 - L2c LINE L2 -6 3381 3298 6 1246 265 333 0 12 chr11 86738387 86738469 -35105387 + GA-rich Low_complexity Low_complexity 3 83 0 6 1246 265 311 86 58 chr11 86738642 86738816 -35105040 - L2c LINE L2 -537 2882 2704 6 1246 261 254 15 30 chr11 86738820 86738908 -35104948 + ID4_ SINE ID 23 109 -43 6 1246 258 222 99 30 chr11 86739290 86739323 -35104533 + B1F SINE Alu 2 92 -57 6 1246 289 204 20 0 chr11 86739323 86739372 -35104484 + ID_B1 SINE B4 159 208 -16 6 1246 258 222 99 30 chr11 86739372 86739390 -35104466 + B1F SINE Alu 93 148 -1 6 1246 249 296 28 0 chr11 86739912 86739983 -35103873 - ID4 SINE ID -9 74 2 6 1246 264 269 13 128 chr11 86740012 86740080 -35103776 + polypyrimidine Low_complexity Low_complexity 67 132 0 6 1246 498 216 173 16 chr11 86740080 86740207 -35103649 - B1_Mur2 SINE Alu -2 147 1 6 1246 264 269 13 128 chr11 86740207 86740219 -35103637 + polypyrimidine Low_complexity Low_complexity 66 66 0 6 1246 1112 119 6 0 chr11 86740219 86740396 -35103460 + (TTC)n Simple_repeat Simple_repeat 2 179 0 6 1246 264 269 13 128 chr11 86740396 86740463 -35103393 + polypyrimidine Low_complexity Low_complexity 1 66 0 6 1246 411 240 28 19 chr11 86740485 86740591 -35103265 - RSINE1 SINE B4 -55 110 4 6 1246 807 248 107 3 chr11 86740817 86741143 -35102713 + L1ME1 LINE L1 5546 5906 -273 6 1246 519 274 13 46 chr11 86741146 86741299 -35102557 + B1F SINE Alu 1 148 -1 6 1246 1269 20 7 0 chr11 86741366 86741512 -35102344 + B1_Mus2 SINE Alu 1 147 0 6 1246 234 0 0 0 chr11 86741514 86741540 -35102316 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1246 1375 84 5 27 chr11 86741604 86741865 -35101991 - ORR1A2 LTR MaLR -8 318 1 6 1246 738 34 0 0 chr11 86742026 86742115 -35101741 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 1246 655 271 83 25 chr11 86742116 86742320 -35101536 - B4 SINE B4 -76 216 1 6 1246 823 228 19 0 chr11 86742335 86742493 -35101363 - ID_B1 SINE B4 -6 218 58 6 1246 227 277 58 58 chr11 86742685 86742754 -35101102 - ID2 SINE ID -12 71 3 6 1246 244 79 105 0 chr11 86742960 86742998 -35100858 + ID_B1 SINE B4 181 222 -2 6 1246 182 196 0 115 chr11 86743045 86743097 -35100759 - L2b LINE L2 -25 3350 3305 6 1246 22 0 0 0 chr11 86743134 86743156 -35100700 + AT_rich Low_complexity Low_complexity 1 22 0 6 1246 309 51 0 0 chr11 86743157 86743196 -35100660 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1246 391 237 20 51 chr11 86743207 86743305 -35100551 - B3 SINE B2 -121 95 1 6 1246 280 258 91 0 chr11 86745187 86745253 -35098603 - ID4_ SINE ID -11 72 1 6 1246 348 83 0 0 chr11 86745445 86745493 -35098363 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 6 1246 1012 91 0 15 chr11 86745493 86745627 -35098229 - B1_Mus1 SINE Alu -15 133 2 6 1246 237 333 64 0 chr11 86745849 86745927 -35097929 - ID_B1 SINE B4 -61 163 81 6 1246 338 276 65 19 chr11 86746163 86746270 -35097586 - ID_B1 SINE B4 -46 178 67 6 1246 439 241 35 28 chr11 86746263 86746404 -35097452 - RMER15 LTR ERVL -19 556 415 6 1246 862 162 7 39 chr11 86746870 86747024 -35096832 + B1_Mur4 SINE Alu 1 149 -1 6 1246 917 45 0 0 chr11 86747417 86747528 -35096328 - B2_Mm2 SINE B2 -82 113 3 6 1246 795 132 93 29 chr11 86747704 86747844 -35096012 - B1_Mur4 SINE Alu 0 150 2 6 1246 293 278 62 44 chr11 86747874 86747987 -35095869 - PB1D9 SINE Alu -1 119 5 6 1246 186 254 84 0 chr11 86747996 86748067 -35095789 + MIRc SINE MIR 81 157 -111 6 1246 513 48 0 0 chr11 86748126 86748189 -35095667 + B2_Mm2 SINE B2 16 78 -117 6 1246 594 139 29 19 chr11 86748162 86748265 -35095591 - B1_Mm SINE Alu -42 105 2 6 1246 379 184 0 139 chr11 86748176 86748277 -35095579 - MT2B LTR ERVL -359 242 156 6 1246 824 194 21 7 chr11 86748983 86749128 -35094728 - B1_Mur3 SINE Alu -1 148 2 6 1246 1139 82 0 7 chr11 86749236 86749383 -35094473 - B1_Mm SINE Alu -1 146 1 6 1246 207 0 0 0 chr11 86750185 86750208 -35093648 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 6 1246 34 0 0 0 chr11 86751173 86751207 -35092649 + AT_rich Low_complexity Low_complexity 1 34 0 6 1246 180 0 0 0 chr11 86752027 86752047 -35091809 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1246 189 0 0 0 chr11 86752269 86752290 -35091566 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 7 1246 223 410 58 34 chr11 86754411 86754704 -35089152 + L2a LINE L2 3109 3408 -18 7 1246 24 0 0 0 chr11 86754789 86754813 -35089043 + AT_rich Low_complexity Low_complexity 1 24 0 7 1246 478 187 8 86 chr11 86754815 86754932 -35088924 + PB1D9 SINE Alu 3 110 -10 7 1246 1106 44 0 0 chr11 86755067 86755203 -35088653 + B1_Mus1 SINE Alu 6 141 -7 7 1246 201 39 0 0 chr11 86755203 86755229 -35088627 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1246 443 237 43 26 chr11 86755712 86755829 -35088027 - PB1D9 SINE Alu 0 120 2 7 1246 261 0 0 0 chr11 86756032 86756061 -35087795 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 7 1246 392 126 172 0 chr11 86756158 86756245 -35087611 + B1F SINE Alu 18 119 -30 7 1246 350 241 120 8 chr11 86756245 86756271 -35087585 + ID_B1 SINE B4 99 224 0 7 1246 966 141 177 5 chr11 86756387 86756579 -35087277 + URR1B DNA MER1_type 1 225 0 7 1246 233 369 97 0 chr11 86757420 86757523 -35086333 - PB1D10 SINE Alu -2 115 3 7 1246 186 103 0 0 chr11 86757567 86757596 -35086260 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1246 868 246 113 16 chr11 86757618 86757866 -35085990 - B4A SINE B4 -16 276 5 7 1246 322 317 93 33 chr11 86758524 86758674 -35085182 - RSINE1 SINE B4 -6 159 1 7 1246 336 167 22 22 chr11 86758984 86759076 -35084780 + CT-rich Low_complexity Low_complexity 4 95 0 7 1246 447 63 0 0 chr11 86759076 86759139 -35084717 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1246 237 204 17 69 chr11 86759734 86759792 -35084064 + PB1D10 SINE Alu 1 55 -62 7 1246 210 257 95 54 chr11 86759792 86759808 -35084048 + B4A SINE B4 86 162 -130 7 1246 1348 72 50 6 chr11 86760989 86761171 -35082685 - B2_Mm2 SINE B2 -4 191 2 7 1246 394 206 130 30 chr11 86761288 86761388 -35082468 - PB1D7 SINE Alu 0 120 11 7 1246 268 256 82 35 chr11 86761599 86761684 -35082172 - PB1D9 SINE Alu -31 89 1 7 1246 319 203 15 15 chr11 86761910 86761975 -35081881 + B1_Mur1 SINE Alu 63 127 -22 7 1246 901 218 25 21 chr11 86762139 86762346 -35081510 - B3A SINE B2 -4 212 1 7 1246 273 257 164 29 chr11 86762415 86762519 -35081337 - ID_B1 SINE B4 -32 192 75 7 1246 934 139 7 0 chr11 86762541 86762678 -35081178 + B1_Mm SINE Alu 6 143 -4 7 1246 288 0 0 0 chr11 86762680 86762712 -35081144 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 1246 308 189 42 59 chr11 86762740 86762850 -35081006 + PB1D9 SINE Alu 9 127 0 7 1246 691 205 99 29 chr11 86762971 86763142 -35080714 - B2_Mm2 SINE B2 -12 183 1 7 1246 432 0 0 0 chr11 86763254 86763302 -35080554 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1246 240 170 0 0 chr11 86764032 86764085 -35079771 + T-rich Low_complexity Low_complexity 1 53 0 7 1246 291 246 0 15 chr11 86764294 86764360 -35079496 + PB1D10 SINE Alu 53 117 0 7 1246 703 271 34 43 chr11 86764735 86764943 -35078913 - B3 SINE B2 -10 206 1 7 1246 258 236 0 0 chr11 86764995 86765050 -35078806 + PB1D10 SINE Alu 55 109 -8 7 1246 457 276 27 14 chr11 86765080 86765227 -35078629 - L1MB7 LINE L1 -56 6128 5980 7 1246 237 242 61 0 chr11 86765689 86765755 -35078101 + L3b LINE CR1 222 291 -191 7 1246 253 266 152 72 chr11 86765831 86765969 -35077887 + B1F1 SINE Alu 1 149 0 7 1246 22 56 0 0 chr11 86767062 86767098 -35076758 + AT_rich Low_complexity Low_complexity 1 36 0 7 1246 252 0 0 0 chr11 86767289 86767317 -35076539 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1246 336 190 139 0 chr11 86767418 86767497 -35076359 + RSINE1 SINE B4 8 97 -68 7 1246 290 336 115 82 chr11 86768024 86768303 -35075553 + MamRep605 Unknown Unknown 449 736 -140 7 1246 323 359 16 81 chr11 86768796 86768835 -35075021 + ID_B1 SINE B4 44 216 -8 7 1246 538 266 29 40 chr11 86768835 86768981 -35074875 + B1_Mur1 SINE Alu 1 141 -8 7 1246 418 186 7 7 chr11 86768981 86768992 -35074864 + (TG)n Simple_repeat Simple_repeat 2 12 0 7 1246 1167 62 14 0 chr11 86768992 86769136 -35074720 + B1_Mus2 SINE Alu 2 147 0 7 1246 418 186 7 7 chr11 86769136 86769265 -35074591 + (TG)n Simple_repeat Simple_repeat 2 131 0 7 1247 226 324 55 37 chr11 86769854 86769963 -35073893 + B1F SINE Alu 23 133 -16 7 1247 403 167 72 72 chr11 86769968 86770065 -35073791 + B1_Mur2 SINE Alu 52 148 -1 7 1247 587 292 39 0 chr11 86771228 86771358 -35072498 - RSINE1 SINE B4 -29 136 2 7 1247 191 85 49 33 chr11 86773295 86773356 -35070500 + A-rich Low_complexity Low_complexity 1 62 0 7 1247 312 308 131 14 chr11 86773387 86773532 -35070324 + RSINE1 SINE B4 1 162 -3 7 1247 346 204 215 0 chr11 86773584 86773677 -35070179 + PB1D10 SINE Alu 1 113 -4 7 1247 297 0 0 0 chr11 86774527 86774560 -35069296 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1247 332 68 0 0 chr11 86774582 86774626 -35069230 - HAL1-3A_ME LINE L1 -845 2013 1970 7 1247 255 210 16 16 chr11 86774757 86774820 -35069036 - MIRc SINE MIR -148 120 58 7 1247 298 243 229 33 chr11 86775143 86775296 -35068560 + MER58A DNA MER1_type 42 224 0 7 1247 281 167 17 85 chr11 86775500 86775559 -35068297 + L2b LINE L2 3317 3382 -5 7 1247 230 0 0 32 chr11 86776848 86776879 -35066977 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1247 180 0 0 0 chr11 86777069 86777089 -35066767 + (CAA)n Simple_repeat Simple_repeat 1 20 0 7 1247 242 284 148 0 chr11 86777654 86777735 -35066121 + MIR3 SINE MIR 101 193 -15 7 1247 301 330 91 0 chr11 86777800 86777888 -35065968 + PB1D10 SINE Alu 5 100 -17 7 1247 249 57 0 0 chr11 86779029 86779064 -35064792 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1247 216 273 182 0 chr11 86779081 86779147 -35064709 + B4 SINE B4 3 80 -212 7 1247 676 235 94 70 chr11 86779191 86779392 -35064464 + B4 SINE B4 79 284 -8 7 1247 192 111 0 0 chr11 86779406 86779442 -35064414 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 7 1247 368 248 150 0 chr11 86779788 86779901 -35063955 + B3 SINE B2 72 201 -15 7 1247 796 210 118 12 chr11 86780111 86780280 -35063576 - ID_B1 SINE B4 0 224 38 7 1247 1222 131 72 14 chr11 86780304 86780513 -35063343 + URR1A DNA MER1_type 1 221 -5 7 1247 494 256 68 80 chr11 86780306 86780556 -35063300 - CYRA11_Mm Unknown Y-chromosome -233 384 138 7 1247 243 226 48 16 chr11 86781328 86781391 -35062465 + PB1 SINE Alu 1 65 -62 7 1247 207 0 0 0 chr11 86781435 86781458 -35062398 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1247 269 267 0 0 chr11 86782007 86782067 -35061789 + MLT1A0 LTR MaLR 91 150 -215 7 1247 223 266 114 44 chr11 86782074 86782188 -35061668 + PB1 SINE Alu 1 122 -5 7 1247 408 338 39 39 chr11 86782208 86782414 -35061442 + MLT1A0 LTR MaLR 145 350 -15 7 1247 308 212 212 0 chr11 86787180 86787279 -35056577 - PB1D7 SINE Alu 0 120 1 7 1247 422 301 36 14 chr11 86787724 86787862 -35055994 - B1_Mur1 SINE Alu -4 145 5 7 1247 558 259 114 0 chr11 86788024 86788190 -35055666 + B3A SINE B2 9 193 -5 7 1247 360 252 103 0 chr11 86788368 86788475 -35055381 - MT2A LTR ERVL -69 464 347 7 1247 264 222 94 62 chr11 86788478 86788574 -35055282 - MT2A LTR ERVL -358 175 77 7 1247 567 119 125 171 chr11 86788574 86788726 -35055130 + B1_Mur4 SINE Alu 1 145 -5 7 1247 261 113 63 16 chr11 86788729 86788792 -35055064 + GA-rich Low_complexity Low_complexity 5 70 0 7 1247 419 177 114 0 chr11 86788792 86788871 -35054985 - MT2A LTR ERVL -445 88 1 7 1247 329 249 71 9 chr11 86789895 86790001 -35053855 + PB1D7 SINE Alu 1 115 -34 7 1247 382 72 3 27 chr11 86790234 86790300 -35053556 + B1_Mur1 SINE Alu 53 147 -2 7 1247 412 266 119 16 chr11 86790332 86790458 -35053398 + B1F2 SINE Alu 1 139 -10 7 1247 1492 58 0 21 chr11 86790524 86790718 -35053138 - B2_Mm2 SINE B2 -5 190 1 7 1247 973 155 111 0 chr11 86790967 86791148 -35052708 - B3 SINE B2 -15 201 1 7 1247 535 129 15 108 chr11 86791661 86791791 -35052065 + PB1D9 SINE Alu 2 119 -1 7 1247 686 111 18 9 chr11 86792003 86792112 -35051744 - B1_Mus1 SINE Alu -15 133 24 7 1247 863 221 34 29 chr11 86792204 86792409 -35051447 + B3 SINE B2 3 208 -8 7 1247 1847 171 91 3 chr11 86792437 86792790 -35051066 + ORR1C2 LTR MaLR 1 384 0 7 1247 529 209 98 63 chr11 86792790 86792964 -35050892 + B3A SINE B2 3 182 -16 7 1247 556 197 58 0 chr11 86793227 86793348 -35050508 + B1F SINE Alu 20 138 -11 7 1247 290 258 195 31 chr11 86793631 86793759 -35050097 + B1F SINE Alu 1 149 0 7 1247 1291 60 12 0 chr11 86793937 86794105 -35049751 - B2_Mm1a SINE B2 -14 179 10 7 1247 754 227 56 20 chr11 86794298 86794496 -35049360 - B3 SINE B2 -11 205 1 7 1247 250 267 83 0 chr11 86794571 86794631 -35049225 - ID_B1 SINE B4 -131 93 29 7 1247 281 231 31 5 chr11 86794579 86794653 -35049203 - ID4_ SINE ID -4 79 1 7 1247 246 313 0 24 chr11 86794773 86794858 -35048998 - ID4_ SINE ID 0 83 1 7 1247 235 264 57 243 chr11 86796190 86796252 -35047604 + B1F SINE Alu 21 55 -94 7 1247 1373 82 22 0 chr11 86796252 86796436 -35047420 - B2_Mm1t SINE B2 -4 189 2 7 1247 280 244 108 42 chr11 86796436 86796513 -35047343 + B1_Mur4 SINE Alu 56 135 -15 7 1247 239 267 26 13 chr11 86797036 86797112 -35046744 + GA-rich Low_complexity Low_complexity 1 77 0 7 1247 316 250 62 0 chr11 86797328 86797408 -35046448 + PB1D10 SINE Alu 3 87 -30 7 1247 278 290 0 0 chr11 86797432 86797494 -35046362 - ID_B1 SINE B4 -54 170 109 7 1247 383 274 0 0 chr11 86797701 86797774 -35046082 + ID2 SINE ID 9 81 -2 8 1247 910 52 0 0 chr11 86797919 86798035 -35045821 + B1_Mus1 SINE Alu 33 148 0 8 1247 325 115 0 54 chr11 86798035 86798127 -35045729 + GA-rich Low_complexity Low_complexity 3 89 0 8 1247 495 285 166 7 chr11 86798308 86798453 -35045403 + B3 SINE B2 6 173 -43 8 1247 253 133 0 111 chr11 86799390 86799450 -35044406 - PB1D9 SINE Alu -96 54 2 8 1247 275 204 50 120 chr11 86799758 86799858 -35043998 - MT2B2 LTR ERVL -324 260 168 8 1247 441 284 0 29 chr11 86799778 86799883 -35043973 - ID_B1 SINE B4 -60 164 63 8 1247 321 125 0 0 chr11 86800029 86800085 -35043771 + (T)n Simple_repeat Simple_repeat 1 56 0 8 1247 1229 48 7 0 chr11 86800087 86800233 -35043623 - B1_Mm SINE Alu 0 147 1 8 1247 755 343 105 41 chr11 86800320 86800834 -35043022 - L4 LINE RTE -67 1962 1416 8 1247 639 83 83 0 chr11 86800838 86800934 -35042922 - B1_Mus1 SINE Alu -5 143 40 8 1247 646 169 87 14 chr11 86801140 86801278 -35042578 + B1_Mur1 SINE Alu 1 148 -1 8 1247 506 239 160 44 chr11 86801454 86801674 -35042182 - MIR SINE MIR -17 245 9 8 1247 481 187 9 45 chr11 86801941 86802053 -35041803 + PB1D9 SINE Alu 13 120 0 8 1247 23 0 0 0 chr11 86802265 86802288 -35041568 + AT_rich Low_complexity Low_complexity 1 23 0 8 1247 349 266 179 7 chr11 86802292 86802432 -35041424 + ID_B1 SINE B4 1 164 -60 8 1247 227 299 12 61 chr11 86802369 86802451 -35041405 + PB1D10 SINE Alu 20 97 -20 8 1247 409 290 41 94 chr11 86802586 86802757 -35041099 + B3A SINE B2 31 192 -6 8 1247 212 350 38 48 chr11 86802805 86802910 -35040946 + B1F2 SINE Alu 1 104 -45 8 1247 257 277 99 0 chr11 86804188 86804289 -35039567 - PB1D7 SINE Alu -8 112 2 8 1247 479 253 19 74 chr11 86804416 86804434 -35039422 + ID_B1 SINE B4 69 219 -3 8 1247 573 261 0 28 chr11 86804434 86804576 -35039280 + B1F SINE Alu 7 144 -5 8 1247 1259 41 0 0 chr11 86804583 86804730 -35039126 + B1_Mm SINE Alu 1 147 0 8 1247 395 283 170 44 chr11 86804897 86805126 -35038730 + MER112 DNA MER1_type 1 258 -3 8 1247 195 69 0 0 chr11 86805147 86805176 -35038680 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 8 1247 524 229 55 35 chr11 86805181 86805326 -35038530 - B1F1 SINE Alu -1 148 1 8 1247 793 169 58 7 chr11 86805341 86805478 -35038378 - B1_Mus1 SINE Alu -3 145 2 8 1247 211 228 112 61 chr11 86806010 86806108 -35037748 + MIR SINE MIR 76 178 -84 8 1247 265 289 13 0 chr11 86808924 86809000 -35034856 + ID4_ SINE ID 5 81 -2 8 1247 250 250 0 35 chr11 86809001 86809059 -35034797 + MIR3 SINE MIR 139 194 -14 8 1247 180 0 0 0 chr11 86809370 86809390 -35034466 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1247 273 119 0 0 chr11 86809786 86809828 -35034028 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 8 1247 720 173 15 8 chr11 86810083 86810217 -35033639 - B1_Mur4 SINE Alu -12 138 4 8 1247 1137 69 0 7 chr11 86810245 86810391 -35033465 + B1_Mm SINE Alu 2 146 -1 8 1247 257 324 0 42 chr11 86810411 86810482 -35033374 - RSINE1 SINE B4 -14 151 84 8 1247 1052 77 28 0 chr11 86810787 86810930 -35032926 - B1_Mus1 SINE Alu -1 147 1 8 1247 210 45 44 22 chr11 86810936 86810981 -35032875 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 8 1247 715 275 0 72 chr11 86810981 86811189 -35032667 - B3A SINE B2 -4 194 2 8 1247 475 273 0 0 chr11 86811479 86811589 -35032267 - PB1D7 SINE Alu -1 119 10 8 1247 291 287 269 0 chr11 86811497 86811605 -35032251 - ID_B1 SINE B4 -13 211 75 8 1247 556 274 157 13 chr11 86811682 86811841 -35032015 - ID_B1 SINE B4 -35 189 8 8 1247 1295 80 5 97 chr11 86811841 86812012 -35031844 + B2_Mm1t SINE B2 2 171 -22 8 1247 3254 3 0 3 chr11 86812012 86812371 -35031485 - L1Md_A LINE L1 0 6582 6225 8 1247 1530 54 11 0 chr11 86812375 86812560 -35031296 - B2_Mm1a SINE B2 -5 188 2 8 1247 1295 80 5 97 chr11 86812560 86812590 -35031266 + B2_Mm1t SINE B2 172 189 -4 8 1247 630 213 0 32 chr11 86812748 86812874 -35030982 - ID_B1 SINE B4 -1 223 102 8 1247 249 320 22 79 chr11 86812751 86812890 -35030966 + YREP_Mm Unknown Unknown 181 311 -1501 8 1247 551 164 186 16 chr11 86813007 86813131 -35030725 + B1_Mus1 SINE Alu 2 146 -2 8 1247 183 231 77 0 chr11 86813709 86813748 -35030108 + L2b LINE L2 3110 3151 -224 8 1247 486 49 0 0 chr11 86813914 86813975 -35029881 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 8 1247 998 122 7 0 chr11 86813979 86814126 -35029730 - B1_Mus1 SINE Alu 0 148 1 8 1247 345 312 10 10 chr11 86814170 86814267 -35029589 + PB1D7 SINE Alu 15 111 -9 8 1247 714 157 6 125 chr11 86814276 86814444 -35029412 + B1_Mur3 SINE Alu 1 148 -1 8 1247 633 268 0 0 chr11 86814483 86814621 -35029235 + B1_Mm SINE Alu 3 140 -7 8 1247 353 22 0 21 chr11 86814641 86814688 -35029168 + (GAGAA)n Simple_repeat Simple_repeat 5 50 0 8 1247 229 283 47 66 chr11 86814711 86814817 -35029039 + B1F SINE Alu 27 130 -19 8 1247 397 262 0 27 chr11 86815174 86815243 -35028613 + BC1_Mm scRNA scRNA 8 76 -76 8 1247 933 35 0 0 chr11 86815243 86815356 -35028500 + (GAAA)n Simple_repeat Simple_repeat 1 113 0 8 1247 1163 83 0 0 chr11 86815357 86815502 -35028354 + B1_Mus2 SINE Alu 2 146 -1 8 1247 397 262 0 27 chr11 86815502 86815540 -35028316 + BC1_Mm scRNA scRNA 77 114 -38 8 1247 192 40 0 0 chr11 86815552 86815577 -35028279 + (GA)n Simple_repeat Simple_repeat 1 25 0 8 1247 205 324 136 72 chr11 86815590 86815826 -35028030 + L2c LINE L2 3105 3355 -32 8 1247 1064 103 0 0 chr11 86816406 86816552 -35027304 - B1_Mus2 SINE Alu -1 146 1 8 1247 210 37 0 0 chr11 86816562 86816589 -35027267 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1247 1417 49 32 37 chr11 86816614 86816804 -35027052 + B2_Mm2 SINE B2 5 193 -2 8 1247 374 181 193 102 chr11 86816837 86817003 -35026853 + B3A SINE B2 2 182 -16 8 1247 873 167 21 0 chr11 86817039 86817183 -35026673 + B1_Mur4 SINE Alu 3 149 -1 8 1247 505 301 124 0 chr11 86817266 86817421 -35026435 + B3 SINE B2 1 167 -49 8 1247 362 83 0 53 chr11 86817421 86817497 -35026359 + (CATA)n Simple_repeat Simple_repeat 4 75 0 8 1247 505 301 124 0 chr11 86817497 86817527 -35026329 + B3 SINE B2 168 208 -8 8 1247 409 241 205 0 chr11 86817535 86817647 -35026209 + B1F SINE Alu 5 139 -10 8 1247 240 163 0 0 chr11 86817825 86817868 -35025988 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 8 1247 501 285 20 34 chr11 86817869 86818018 -35025838 - B1F SINE Alu -2 147 1 8 1247 310 235 64 64 chr11 86818034 86818051 -35025805 + L1MEg LINE L1 1865 1880 -4204 8 1247 630 225 41 27 chr11 86818051 86818197 -35025659 + B1_Mur3 SINE Alu 2 149 0 8 1247 534 31 0 0 chr11 86818202 86818266 -35025590 + (GAGAA)n Simple_repeat Simple_repeat 5 68 0 8 1247 1201 68 0 0 chr11 86818266 86818412 -35025444 + B1_Mus1 SINE Alu 3 148 0 8 1247 310 235 64 64 chr11 86818412 86818496 -35025360 + L1MEg LINE L1 1886 1971 -4113 8 1247 458 281 0 0 chr11 86818866 86818962 -35024894 - ID_B1 SINE B4 -18 206 111 8 1247 216 0 0 0 chr11 86819053 86819077 -35024779 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1247 654 261 0 0 chr11 86819342 86819476 -35024380 - RSINE1 SINE B4 -28 137 4 8 1247 299 85 0 21 chr11 86819557 86819605 -35024251 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1247 575 273 63 57 chr11 86819618 86819777 -35024079 - B3A SINE B2 -36 162 3 8 1247 267 31 0 0 chr11 86819777 86819809 -35024047 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 8 1247 548 185 77 0 chr11 86819816 86819946 -35023910 - B1_Mur1 SINE Alu -8 141 2 8 1247 202 97 32 0 chr11 86819963 86819994 -35023862 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 8 1247 1171 62 0 0 chr11 86819994 86820140 -35023716 - B1_Mus2 SINE Alu 0 147 2 8 1247 189 0 0 0 chr11 86820140 86820161 -35023695 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1247 334 246 0 0 chr11 86820164 86820229 -35023627 - ID_B1 SINE B4 -15 209 145 8 1247 777 295 34 54 chr11 86820243 86820271 -35023585 - B4A SINE B4 -1 291 273 8 1247 315 104 0 0 chr11 86820271 86820319 -35023537 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1247 777 295 34 54 chr11 86820319 86820587 -35023269 - B4A SINE B4 -20 272 1 8 1247 582 239 79 7 chr11 86820598 86820610 -35023246 - B1_Mur2 SINE Alu 0 149 138 8 1247 181 0 0 65 chr11 86820610 86820641 -35023215 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 8 1247 582 239 79 7 chr11 86820641 86820767 -35023089 - B1_Mur2 SINE Alu -12 137 2 8 1247 355 232 14 0 chr11 86820767 86820831 -35023025 - ID_B1 SINE B4 -68 156 92 8 1247 399 304 11 0 chr11 86821322 86821414 -35022442 + B1_Mur2 SINE Alu 2 94 -55 8 1247 363 214 82 64 chr11 86821437 86821547 -35022309 - PB1D9 SINE Alu -6 114 3 8 1247 405 225 36 0 chr11 86821554 86821659 -35022197 - PB1D9 SINE Alu -2 118 2 8 1247 318 250 0 0 chr11 86821746 86821810 -35022046 - MER5B DNA MER1_type -82 96 33 8 1247 683 248 15 0 chr11 86821810 86821947 -35021909 + RSINE1 SINE B4 1 139 -26 8 1247 250 348 45 13 chr11 86821820 86821977 -35021879 + B2_Mm1a SINE B2 11 172 -21 8 1247 216 268 107 0 chr11 86822063 86822119 -35021737 - BC1_Mm scRNA scRNA -83 69 8 8 1247 551 176 59 0 chr11 86822119 86822232 -35021624 - B1_Mur1 SINE Alu -6 143 6 8 1247 414 0 0 0 chr11 86822305 86822351 -35021505 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1247 204 97 0 0 chr11 86822352 86822383 -35021473 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1247 227 106 43 0 chr11 86822400 86822447 -35021409 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 8 1247 250 254 31 16 chr11 86822464 86822528 -35021328 - ID4_ SINE ID -10 73 9 9 1247 845 237 110 34 chr11 86822584 86822636 -35021220 - B4A SINE B4 0 292 239 9 1247 1119 30 67 0 chr11 86822636 86822771 -35021085 - B1_Mus1 SINE Alu 0 148 5 9 1247 845 237 110 34 chr11 86822771 86822954 -35020902 - B4A SINE B4 -54 238 39 9 1247 431 291 8 49 chr11 86822964 86823087 -35020769 - PB1D7 SINE Alu -2 118 1 9 1247 662 189 82 22 chr11 86823391 86823526 -35020330 - B1_Mur1 SINE Alu -2 147 5 9 1247 304 230 107 38 chr11 86823552 86823683 -35020173 - L1MC3 LINE L1 -129 7656 7517 9 1247 207 0 0 0 chr11 86823702 86823725 -35020131 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1247 980 119 0 0 chr11 86823767 86823910 -35019946 - B1_Mus2 SINE Alu 0 147 5 9 1247 1214 62 0 0 chr11 86823937 86824082 -35019774 - B1_Mus2 SINE Alu -1 146 2 9 1247 1345 77 16 21 chr11 86824462 86824649 -35019207 + B2_Mm2 SINE B2 1 186 -9 9 1247 521 179 122 26 chr11 86824708 86824823 -35019033 - B1F SINE Alu 0 149 24 9 1247 294 120 0 0 chr11 86824867 86824917 -35018939 + B3 SINE B2 167 216 0 9 1247 376 262 108 108 chr11 86824980 86825138 -35018718 - RSINE1 SINE B4 0 165 8 9 1247 1437 82 27 0 chr11 86825169 86825353 -35018503 - B2_Mm1t SINE B2 -4 189 1 9 1247 1329 84 10 45 chr11 86825355 86825554 -35018302 - B2_Mm1t SINE B2 -1 192 1 9 1247 298 250 75 21 chr11 86825570 86825664 -35018192 - PB1D7 SINE Alu -9 111 13 9 1247 1039 76 0 0 chr11 86825668 86825799 -35018057 + B1_Mur4 SINE Alu 5 135 -15 9 1247 454 286 132 11 chr11 86825956 86826228 -35017628 - Lx7 LINE L1 -174 7522 7218 9 1247 327 49 0 0 chr11 86826284 86826325 -35017531 + (CTTA)n Simple_repeat Simple_repeat 2 42 0 9 1247 837 286 2 33 chr11 86826371 86826593 -35017263 - MTD LTR MaLR -209 191 1 9 1247 227 342 0 0 chr11 86826623 86826702 -35017154 - ID4 SINE ID -3 80 2 9 1247 25 0 0 0 chr11 86826702 86826727 -35017129 + AT_rich Low_complexity Low_complexity 1 25 0 9 1247 359 268 158 61 chr11 86826738 86826807 -35017049 - ID_B1 SINE B4 0 292 114 9 1247 533 160 9 86 chr11 86826807 86826923 -35016933 - PB1D9 SINE Alu -8 112 6 9 1247 359 268 158 61 chr11 86826923 86826935 -35016921 - ID_B1 SINE B4 0 113 78 9 1247 667 265 40 9 chr11 86826945 86827122 -35016734 - B3 SINE B2 -1 197 18 9 1247 264 273 115 48 chr11 86827146 86827250 -35016606 - PB1 SINE Alu 0 127 17 9 1247 243 325 8 81 chr11 86827391 86827515 -35016341 - PB1D7 SINE Alu -1 119 5 9 1247 654 148 0 0 chr11 86827516 86827631 -35016225 + (TC)n Simple_repeat Simple_repeat 2 116 0 9 1247 323 60 0 20 chr11 86827633 86827684 -35016172 + (CCCTAA)n Simple_repeat Simple_repeat 6 55 0 9 1247 275 276 103 0 chr11 86827718 86827805 -35016051 - ID_B1 SINE B4 -127 97 2 9 1247 230 242 61 0 chr11 86828063 86828129 -35015727 + ID4_ SINE ID 2 71 -12 9 1247 3867 38 0 2 chr11 86828375 86828822 -35015034 - L1_Mus1 LINE L1 -14 6553 6108 9 1247 256 315 53 26 chr11 86829084 86829198 -35014658 - B3A SINE B2 -15 183 67 9 1247 245 272 239 14 chr11 86829234 86829252 -35014604 - B4 SINE B4 -38 254 237 9 1247 414 0 0 0 chr11 86829252 86829298 -35014558 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1247 493 229 73 0 chr11 86829308 86829417 -35014439 - PB1D10 SINE Alu 0 117 1 9 1247 282 231 261 27 chr11 86829438 86829458 -35014398 - ID_B1 SINE B4 -2 222 86 9 1247 432 236 11 22 chr11 86829458 86829549 -35014307 - B1_Mur2 SINE Alu -55 94 5 9 1247 294 29 0 0 chr11 86829567 86829602 -35014254 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 9 1247 871 163 0 0 chr11 86829614 86829743 -35014113 - B3 SINE B2 -86 130 2 9 1247 833 210 108 0 chr11 86829747 86829942 -35013914 - B3 SINE B2 0 216 1 9 1247 216 0 0 0 chr11 86829995 86830019 -35013837 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 9 1247 438 282 115 40 chr11 86830019 86830167 -35013689 - RSINE1 SINE B4 -6 159 1 9 1247 201 138 0 0 chr11 86830182 86830211 -35013645 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 9 1247 787 147 80 7 chr11 86830213 86830350 -35013506 - B1_Mus2 SINE Alu 0 147 1 9 1247 225 0 0 0 chr11 86830357 86830382 -35013474 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1247 386 130 18 44 chr11 86830382 86830495 -35013361 + (TA)n Simple_repeat Simple_repeat 2 111 0 9 1247 398 247 62 80 chr11 86830515 86830691 -35013165 - B2_Mm2 SINE B2 -22 173 1 9 1247 417 274 0 10 chr11 86830844 86830947 -35012909 + PB1D10 SINE Alu 3 104 -13 9 1247 1414 64 0 60 chr11 86830974 86831173 -35012683 - B2_Mm2 SINE B2 -8 187 1 9 1247 458 214 66 188 chr11 86831175 86831388 -35012468 - B2_Mm2 SINE B2 -5 190 4 9 1247 405 0 0 0 chr11 86831595 86831640 -35012216 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1247 505 202 11 11 chr11 86832092 86832187 -35011669 + B1_Mur4 SINE Alu 11 105 -45 9 1247 810 167 41 20 chr11 86832220 86832367 -35011489 - B1_Mur4 SINE Alu 0 150 1 9 1247 675 219 14 7 chr11 86832512 86832659 -35011197 + B3A SINE B2 1 148 -50 9 1247 378 0 0 0 chr11 86832659 86832701 -35011155 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1247 266 264 21 107 chr11 86832737 86832850 -35011006 + ID4 SINE ID 2 109 -43 9 1247 703 115 161 16 chr11 86832850 86832974 -35010882 + B1_Mus1 SINE Alu 1 142 -6 9 1247 234 264 21 107 chr11 86832974 86833000 -35010856 + BC1_Mm scRNA scRNA 110 129 -23 9 1247 518 197 160 30 chr11 86833507 86833638 -35010218 - RSINE1 SINE B4 -15 150 3 9 1247 483 250 0 0 chr11 86833739 86833843 -35010013 + PB1D10 SINE Alu 3 106 -11 9 1247 192 40 0 0 chr11 86833843 86833868 -35009988 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1247 673 210 75 59 chr11 86834096 86834283 -35009573 - B3A SINE B2 -6 192 3 9 1247 635 269 0 0 chr11 86834413 86834562 -35009294 - B1F1 SINE Alu 0 149 1 9 1247 231 170 0 41 chr11 86834721 86834770 -35009086 - PB1D10 SINE Alu -1 116 70 9 1247 1210 45 0 0 chr11 86834844 86834998 -35008858 + B2_Mm1a SINE B2 2 155 -38 9 1247 650 45 0 11 chr11 86834999 86835090 -35008766 + (TAAA)n Simple_repeat Simple_repeat 3 92 0 9 1247 1548 173 97 12 chr11 86835114 86835453 -35008403 + ORR1D1 LTR MaLR 1 368 -6 9 1247 233 242 75 15 chr11 86835451 86835518 -35008338 - U6 snRNA snRNA -14 93 23 9 1247 512 160 0 10 chr11 86835538 86835639 -35008217 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1247 1071 191 59 0 chr11 86835716 86835920 -35007936 - B3 SINE B2 0 216 1 9 1247 480 232 0 0 chr11 86836031 86836182 -35007674 + (TG)n Simple_repeat Simple_repeat 2 152 0 9 1247 441 0 0 0 chr11 86836277 86836326 -35007530 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1247 263 393 9 0 chr11 86836328 86836440 -35007416 + MER21B LTR ERV1 327 439 -424 9 1247 1595 22 11 0 chr11 86836695 86836879 -35006977 - B2_Mm1a SINE B2 -6 187 2 9 1247 384 223 83 0 chr11 86837016 86837137 -35006719 + RSINE1 SINE B4 8 138 -27 9 1247 555 293 130 18 chr11 86837145 86837418 -35006438 + MTE2b LTR MaLR 22 348 -31 9 1247 27 49 0 0 chr11 86837418 86837459 -35006397 + AT_rich Low_complexity Low_complexity 1 41 0 9 1247 413 265 119 8 chr11 86837474 86837592 -35006264 - RSINE1 SINE B4 -33 132 2 9 1247 1163 95 0 0 chr11 86837632 86837779 -35006077 + B1_Mus2 SINE Alu 1 147 0 9 1247 541 171 14 0 chr11 86837827 86837973 -35005883 + (TG)n Simple_repeat Simple_repeat 1 148 0 9 1247 904 73 97 0 chr11 86837973 86838097 -35005759 + B1_Mus1 SINE Alu 2 137 -11 9 1247 266 0 0 29 chr11 86838097 86838132 -35005724 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1247 240 143 0 0 chr11 86838175 86838217 -35005639 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1247 343 310 0 0 chr11 86838223 86838310 -35005546 - PB1D10 SINE Alu -16 101 15 9 1247 312 283 118 56 chr11 86838323 86838484 -35005372 + B4A SINE B4 122 292 0 9 1247 351 0 0 0 chr11 86838500 86838539 -35005317 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1247 658 207 87 58 chr11 86838550 86838791 -35005065 - B4 SINE B4 -43 249 2 9 1247 305 355 9 0 chr11 86838881 86838988 -35004868 - ID_B1 SINE B4 -7 217 110 9 1247 39 0 0 0 chr11 86839197 86839236 -35004620 + AT_rich Low_complexity Low_complexity 1 39 0 9 1247 498 229 0 153 chr11 86839249 86839393 -35004463 - B1F SINE Alu -2 147 26 9 1247 664 171 11 166 chr11 86839463 86839638 -35004218 - B1_Mur3 SINE Alu 0 149 2 9 1247 384 204 9 75 chr11 86839682 86839788 -35004068 - MER57F LTR ERV1 -333 103 5 9 1247 265 274 0 16 chr11 86839799 86839862 -35003994 - ID4_ SINE ID -1 82 21 9 1247 388 268 9 9 chr11 86839873 86839986 -35003870 + ID_B1 SINE B4 52 164 -60 9 1247 204 113 0 70 chr11 86840022 86840079 -35003777 + GA-rich Low_complexity Low_complexity 4 56 0 9 1247 381 208 226 0 chr11 86840457 86840563 -35003293 + B3 SINE B2 87 216 0 9 1247 594 168 80 93 chr11 86840619 86840770 -35003086 + B1_Mur3 SINE Alu 1 149 0 9 1247 253 0 54 0 chr11 86840792 86840829 -35003027 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1247 1126 62 14 0 chr11 86840829 86840973 -35002883 - B1_Mus1 SINE Alu -2 146 1 9 1247 236 197 0 62 chr11 86840978 86841009 -35002847 + T-rich Low_complexity Low_complexity 47 76 0 9 1247 634 299 0 0 chr11 86841009 86841156 -35002700 - B1F SINE Alu -1 148 2 9 1247 236 197 0 62 chr11 86841156 86841196 -35002660 + T-rich Low_complexity Low_complexity 9 46 0 9 1247 1234 34 0 7 chr11 86841196 86841344 -35002512 - B1_Mm SINE Alu 0 147 1 1 1247 779 154 8 0 chr11 86841390 86841513 -35002343 + B3 SINE B2 7 130 -86 1 1247 597 257 15 0 chr11 86841663 86841799 -35002057 + B1F1 SINE Alu 1 138 -11 1 1247 635 184 284 6 chr11 86841948 86842084 -35001772 + B3 SINE B2 1 153 -63 1 1247 363 23 0 0 chr11 86842084 86842128 -35001728 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1247 635 184 284 6 chr11 86842128 86842160 -35001696 + B3 SINE B2 154 214 -2 1 1247 635 0 0 13 chr11 86842596 86842672 -35001184 + (TTTCC)n Simple_repeat Simple_repeat 1 75 0 1 1247 996 124 17 6 chr11 86842674 86842852 -35001004 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1247 274 260 74 55 chr11 86843991 86844154 -34999702 + RLTR23 LTR ERV1 265 430 0 1 1247 251 255 81 50 chr11 86844155 86844254 -34999602 - B1_Mur1 SINE Alu -9 140 39 1 1247 186 118 0 0 chr11 86844269 86844303 -34999553 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1247 311 328 109 0 chr11 86844672 86844791 -34999065 - B1F1 SINE Alu -7 142 11 1 1247 541 319 0 40 chr11 86844998 86845171 -34998685 - B4 SINE B4 -45 247 82 1 1247 310 279 54 9 chr11 86845240 86845352 -34998504 - PB1D10 SINE Alu 0 117 1 1 1247 476 238 106 15 chr11 86845771 86845903 -34997953 - RSINE1 SINE B4 -19 146 3 1 1247 592 262 19 32 chr11 86845945 86846099 -34997757 - RSINE1 SINE B4 -11 154 3 1 1247 803 118 31 0 chr11 86846105 86846232 -34997624 - B1_Mur2 SINE Alu -9 140 10 1 1247 281 292 126 52 chr11 86846414 86846685 -34997171 - B4A SINE B4 0 292 2 1 1247 569 290 0 6 chr11 86846721 86846884 -34996972 - B3 SINE B2 -5 211 50 1 1247 1019 98 0 0 chr11 86847025 86847158 -34996698 + B1_Mus1 SINE Alu 1 133 -15 1 1247 407 233 0 64 chr11 86848187 86848297 -34995559 - PB1D10 SINE Alu -14 103 1 1 1247 350 161 223 74 chr11 86849332 86849453 -34994403 - B1_Mur1 SINE Alu -5 144 6 1 1247 787 231 32 16 chr11 86849802 86849991 -34993865 - B3A SINE B2 -6 192 1 1 1247 217 276 80 16 chr11 86850717 86850842 -34993014 + RSINE1 SINE B4 22 154 -11 1 1247 668 162 0 0 chr11 86850899 86851004 -34992852 + B3 SINE B2 1 105 -111 1 1247 587 263 164 11 chr11 86851121 86851298 -34992558 + B3 SINE B2 11 214 -2 1 1247 358 141 127 0 chr11 86851495 86851566 -34992290 + PB1D9 SINE Alu 40 119 -1 1 1247 807 285 40 5 chr11 86851818 86852019 -34991837 + B3 SINE B2 6 213 -3 1 1247 927 146 14 14 chr11 86852027 86852173 -34991683 + B1_Mur4 SINE Alu 1 146 -4 1 1247 702 207 29 0 chr11 86852228 86852368 -34991488 + B1_Mur1 SINE Alu 2 145 -4 1 1247 274 220 111 88 chr11 86852572 86852663 -34991193 - PB1D10 SINE Alu -51 98 7 1 1247 432 279 99 19 chr11 86852860 86853021 -34990835 - B4A SINE B4 -117 175 2 1 1247 388 219 20 20 chr11 86853235 86853333 -34990523 + B1F1 SINE Alu 1 98 -51 1 1247 264 30 0 0 chr11 86853343 86853376 -34990480 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1247 493 258 52 26 chr11 86853515 86853670 -34990186 + RSINE1 SINE B4 3 161 -4 1 1247 901 264 32 32 chr11 86853705 86853990 -34989866 + B4 SINE B4 2 286 -6 1 1247 244 120 20 20 chr11 86854121 86854172 -34989684 + CT-rich Low_complexity Low_complexity 2 52 0 1 1247 834 163 0 0 chr11 86854180 86854321 -34989535 - B1_Mus1 SINE Alu -1 147 7 1 1247 268 343 27 18 chr11 86854482 86854592 -34989264 - Lx8 LINE L1 -149 7324 7214 1 1247 289 225 24 36 chr11 86854659 86854742 -34989114 - Lx8 LINE L1 -216 7257 7176 1 1247 23 0 0 0 chr11 86854751 86854774 -34989082 + AT_rich Low_complexity Low_complexity 1 23 0 1 1247 256 258 10 73 chr11 86854780 86854876 -34988980 - MLT1A1 LTR MaLR 0 408 319 1 1247 273 118 0 0 chr11 86855929 86855980 -34987876 + (CAAT)n Simple_repeat Simple_repeat 2 52 0 1 1247 240 277 71 12 chr11 86856003 86856087 -34987769 - L1MC4a LINE L1 -6 7876 7788 1 1247 336 272 241 5 chr11 86856216 86856423 -34987433 - L1MD2 LINE L1 -210 6149 5894 1 1247 225 108 0 0 chr11 86856445 86856482 -34987374 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1247 281 264 79 22 chr11 86856520 86856609 -34987247 - B4A SINE B4 -196 96 3 1 1247 24 0 0 0 chr11 86856617 86856641 -34987215 + AT_rich Low_complexity Low_complexity 1 24 0 1 1247 346 268 31 10 chr11 86856681 86856779 -34987077 - RSINE1 SINE B4 -63 102 3 1 1247 517 232 28 35 chr11 86856888 86857031 -34986825 - B1F SINE Alu -5 144 3 1 1247 300 19 115 0 chr11 86857041 86857093 -34986763 - L1Md_F3 LINE L1 0 6584 6527 1 1247 240 35 0 0 chr11 86857095 86857124 -34986732 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1247 1138 48 0 39 chr11 86857124 86857277 -34986579 - B1_Mus2 SINE Alu 0 147 1 1 1247 409 266 51 42 chr11 86857325 86857443 -34986413 - PB1D9 SINE Alu -1 119 1 1 1247 5289 91 11 4 chr11 86857466 86858263 -34985593 + RMER12 LTR ERVK 55 857 -465 1 1247 207 0 0 0 chr11 86858270 86858293 -34985563 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1247 580 91 16 120 chr11 86859645 86859770 -34984086 - PB1D9 SINE Alu 0 120 9 1 1247 251 284 25 0 chr11 86859824 86859905 -34983951 - L1MD2 LINE L1 -97 6262 6180 1 1247 223 265 44 0 chr11 86859931 86859999 -34983857 - ID4_ SINE ID -2 81 11 1 1247 504 239 0 0 chr11 86860027 86860140 -34983716 - ID_B1 SINE B4 -7 217 105 1 1247 576 260 14 7 chr11 86860199 86860346 -34983510 - B1_Mur2 SINE Alu -1 148 1 1 1247 198 171 0 0 chr11 86860478 86860519 -34983337 + A-rich Low_complexity Low_complexity 1 41 0 1 1247 281 308 48 0 chr11 86860856 86860960 -34982896 + RLTR18-int LTR ERVK 2530 2638 -2723 1 1247 890 220 17 0 chr11 86860986 86861159 -34982697 + RLTR18-int LTR ERVK 2826 3001 -2360 1 1247 874 197 21 16 chr11 86861272 86861463 -34982393 + RLTR18-int LTR ERVK 4049 4240 -1020 1 1247 832 281 65 27 chr11 86861455 86861748 -34982108 + RLTR18-int LTR ERVK 4809 5112 -148 1 1247 26 0 0 0 chr11 86862028 86862054 -34981802 + AT_rich Low_complexity Low_complexity 1 26 0 1 1247 1130 43 35 0 chr11 86862583 86862724 -34981132 + B1_Mus2 SINE Alu 2 147 0 1 1247 345 168 0 19 chr11 86862787 86862875 -34980981 + B2_Mm2 SINE B2 50 135 -58 1 1247 271 265 128 0 chr11 86863394 86863496 -34980360 + RSINE1 SINE B4 21 135 -30 1 1247 1394 84 26 0 chr11 86863734 86863924 -34979932 + B2_Mm2 SINE B2 1 195 0 1 1247 545 143 20 0 chr11 86863963 86864061 -34979795 + B1_Mus2 SINE Alu 48 147 0 1 1247 261 83 0 0 chr11 86864183 86864219 -34979637 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 1 1247 676 211 106 40 chr11 86864229 86864427 -34979429 + B3 SINE B2 2 212 -4 1 1247 743 215 136 15 chr11 86864464 86864662 -34979194 + ID_B1 SINE B4 3 224 0 1 1247 591 218 68 0 chr11 86864679 86864812 -34979044 - B1_Mur4 SINE Alu -8 142 1 1 1247 336 278 22 11 chr11 86865071 86865162 -34978694 + B1F1 SINE Alu 3 94 -55 1 1247 236 326 20 39 chr11 86865162 86865173 -34978683 + ID_B1 SINE B4 84 183 -41 1 1247 377 243 48 5 chr11 86865353 86865469 -34978387 - B3 SINE B2 -69 129 1 1 1247 216 0 0 0 chr11 86865730 86865754 -34978102 + (CAA)n Simple_repeat Simple_repeat 3 26 0 1 1247 535 308 49 29 chr11 86866104 86866308 -34977548 - B3 SINE B2 0 216 9 1 1247 358 241 41 49 chr11 86866314 86866436 -34977420 - MER3 DNA MER1_type -88 121 1 1 1247 459 52 0 0 chr11 86866563 86866621 -34977235 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1247 231 144 190 0 chr11 86866729 86866799 -34977057 - B1_Mur1 SINE Alu -16 133 44 1 1247 443 232 35 9 chr11 86866886 86866999 -34976857 + PB1D9 SINE Alu 5 120 0 1 1247 261 310 67 8 chr11 86867083 86867211 -34976645 + MIRc SINE MIR 25 158 -50 1 1247 282 133 0 0 chr11 86867274 86867319 -34976537 - ID_B1 SINE B4 0 224 180 1 1247 215 167 180 16 chr11 86867319 86867334 -34976522 - PB1D7 SINE Alu 0 119 50 1 1247 584 231 0 0 chr11 86867480 86867588 -34976268 + B1_Mur1 SINE Alu 2 109 -40 1 1247 781 205 0 20 chr11 86867694 86867843 -34976013 + B1_Mur3 SINE Alu 4 149 0 1 1247 562 300 31 16 chr11 86868216 86868409 -34975447 - B3A SINE B2 -1 197 2 1 1247 474 18 0 0 chr11 86868409 86868464 -34975392 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 1247 612 185 86 0 chr11 86868594 86868745 -34975111 - B3A SINE B2 -34 164 1 1 1247 492 208 57 0 chr11 86868756 86868862 -34974994 - PB1D7 SINE Alu -7 113 2 1 1247 604 217 146 7 chr11 86868985 86869129 -34974727 + RSINE1 SINE B4 2 165 0 1 1247 655 146 8 8 chr11 86869137 86869268 -34974588 + GA-rich Low_complexity Low_complexity 3 133 0 1 1247 314 256 3 8 chr11 86869391 86869482 -34974374 + B1F SINE Alu 48 136 -13 1 1247 514 250 40 34 chr11 86869484 86869633 -34974223 + RSINE1 SINE B4 3 152 -13 1 1247 543 223 15 9 chr11 86869856 86869984 -34973872 + B1F SINE Alu 6 141 -8 1 1247 198 0 0 0 chr11 86870623 86870645 -34973211 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1247 410 211 200 9 chr11 86870679 86870789 -34973067 - B3A SINE B2 -84 132 2 1 1247 24 0 0 0 chr11 86870789 86870813 -34973043 + AT_rich Low_complexity Low_complexity 1 24 0 1 1247 1217 48 0 0 chr11 86870820 86870965 -34972891 - B1_Mus1 SINE Alu -2 146 2 1 1247 414 0 0 0 chr11 86870965 86871011 -34972845 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 1247 773 124 93 0 chr11 86871027 86871156 -34972700 - B1_Mur3 SINE Alu -2 147 7 1 1247 323 301 0 0 chr11 86871427 86871510 -34972346 - RSINE1 SINE B4 -2 163 81 1 1247 203 0 37 0 chr11 86871574 86871601 -34972255 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1247 1050 144 193 0 chr11 86871824 86872005 -34971851 - B3 SINE B2 0 216 1 1 1247 588 272 28 11 chr11 86872157 86872339 -34971517 + ID_B1 SINE B4 1 185 -39 1 1247 1010 234 5 9 chr11 86872499 86872715 -34971141 - B3 SINE B2 0 216 2 1 1247 1164 77 59 0 chr11 86873305 86873475 -34970381 - B2_Mm2 SINE B2 -1 194 15 1 1247 242 189 0 36 chr11 86873668 86873723 -34970133 + ID_B1 SINE B4 94 146 -78 1 1247 434 205 104 24 chr11 86873802 86873927 -34969929 + ID_B1 SINE B4 87 221 -3 1 1247 332 280 65 0 chr11 86874190 86874283 -34969573 + B1F SINE Alu 1 99 -50 1 1247 300 27 0 0 chr11 86874347 86874384 -34969472 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1247 414 0 0 0 chr11 86874384 86874429 -34969427 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1247 2515 68 6 36 chr11 86874686 86874775 -34969081 + ORR1A2 LTR MaLR 1 89 -238 1 1247 1488 59 11 0 chr11 86874775 86874961 -34968895 - B2_Mm1a SINE B2 -5 188 1 1 1247 2515 68 6 36 chr11 86874961 86875208 -34968648 + ORR1A2 LTR MaLR 90 327 0 1 1247 662 204 0 78 chr11 86875234 86875388 -34968468 + B1_Mur1 SINE Alu 2 143 -6 1 1247 383 202 10 0 chr11 86875392 86875496 -34968360 + GA-rich Low_complexity Low_complexity 3 107 0 1 1247 339 372 18 0 chr11 86875501 86875614 -34968242 + ID_B1 SINE B4 84 198 -26 1 1247 446 264 56 0 chr11 86875816 86875941 -34967915 + ID_B1 SINE B4 86 217 -7 1 1247 884 102 29 14 chr11 86876289 86876429 -34967427 - B1_Mur3 SINE Alu -1 148 7 1 1247 275 238 0 0 chr11 86876582 86876645 -34967211 + tRNA-Ala-GCY_ tRNA tRNA 3 65 -10 1 1247 379 351 32 45 chr11 86877672 86877740 -34966116 + ID SINE ID 17 82 -142 1 1247 302 273 53 26 chr11 86877740 86877853 -34966003 + PB1D10 SINE Alu 1 116 -1 1 1247 427 266 18 0 chr11 86878551 86878664 -34965192 - ID_B1 SINE B4 -5 219 105 1 1247 189 121 0 0 chr11 86878708 86878741 -34965115 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1247 324 270 22 89 chr11 86878838 86879017 -34964839 - B4A SINE B4 -125 167 1 1 1247 774 169 34 34 chr11 86879080 86879227 -34964629 + B1_Mur3 SINE Alu 1 147 -2 1 1247 819 210 12 6 chr11 86879376 86879539 -34964317 + B2_Mm2 SINE B2 2 165 -30 1 1247 309 269 124 22 chr11 86879731 86879868 -34963988 - Charlie1a DNA MER1_type -1295 160 10 1 1247 276 271 118 0 chr11 86879915 86880000 -34963856 - PB1D10 SINE Alu -14 103 9 1 1247 225 317 70 88 chr11 86879922 86880036 -34963820 - ID_B1 SINE B4 -49 175 64 1 1247 615 185 85 0 chr11 86880065 86880195 -34963661 + B1F2 SINE Alu 2 142 -7 1 1247 180 77 0 0 chr11 86880195 86880221 -34963635 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1247 1111 103 0 0 chr11 86880240 86880386 -34963470 - B1_Mus1 SINE Alu 0 148 3 1 1247 180 0 0 0 chr11 86880413 86880433 -34963423 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1247 349 303 11 0 chr11 86880471 86880560 -34963296 - RSINE1 SINE B4 -72 93 4 1 1247 279 222 22 90 chr11 86880645 86880734 -34963122 + L1MA6 LINE L1 5850 5932 -368 1 1247 279 317 19 47 chr11 86880737 86880763 -34963093 - B4A SINE B4 -109 183 114 1 1247 322 217 14 14 chr11 86880763 86880833 -34963023 - B1_Mus2 SINE Alu -71 76 7 1 1247 389 285 46 8 chr11 86880843 86880857 -34962999 - B1F SINE Alu -2 147 134 1 1247 818 173 7 7 chr11 86880857 86880997 -34962859 - B1_Mur1 SINE Alu -7 142 3 1 1247 487 302 0 0 chr11 86881007 86881113 -34962743 - ID_B1 SINE B4 -26 198 93 1 1247 283 297 67 55 chr11 86881371 86881535 -34962321 + RLTR23 LTR ERV1 265 430 0 1 1247 850 167 0 0 chr11 86881535 86881667 -34962189 - B1_Mur2 SINE Alu -17 132 1 1 1247 329 236 14 0 chr11 86881878 86881950 -34961906 - PB1D9 SINE Alu -5 115 43 1 1247 182 289 0 78 chr11 86882052 86882142 -34961714 - MIRb SINE MIR -22 246 164 1 1247 439 250 36 27 chr11 86882178 86882289 -34961567 + PB1D10 SINE Alu 6 117 0 1 1247 207 0 0 0 chr11 86882298 86882321 -34961535 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1247 594 294 58 21 chr11 86882760 86882948 -34960908 - ID_B1 SINE B4 0 224 30 1 1247 1798 177 6 26 chr11 86883093 86883435 -34960421 - MTD LTR MaLR -36 383 49 1 1247 934 154 0 0 chr11 86883437 86883580 -34960276 + B1_Mur4 SINE Alu 2 144 -6 1 1247 561 115 0 0 chr11 86883581 86883668 -34960188 + (GAAAA)n Simple_repeat Simple_repeat 4 90 0 1 1247 353 145 159 0 chr11 86883724 86883793 -34960063 - RSINE1 SINE B4 -78 87 8 1 1247 210 304 21 11 chr11 86883798 86883813 -34960043 - B1_Mus1 SINE Alu -21 127 34 1 1247 404 218 0 0 chr11 86883813 86883891 -34959965 - ID_B1 SINE B4 -33 191 114 1 1247 297 242 8 0 chr11 86883907 86883979 -34959877 - PB1D10 SINE Alu -51 98 24 1 1247 243 88 0 0 chr11 86884098 86884132 -34959724 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1247 934 69 15 0 chr11 86884132 86884262 -34959594 - B2_Mm2 SINE B2 -36 159 28 1 1247 565 322 20 8 chr11 86884248 86884454 -34959402 - B4 SINE B4 -35 257 49 1 1247 421 246 64 43 chr11 86884628 86884768 -34959088 - RSINE1 SINE B4 -10 155 13 1 1247 298 88 12 59 chr11 86885109 86885194 -34958662 + (CAAA)n Simple_repeat Simple_repeat 2 82 0 1 1247 1482 63 11 0 chr11 86885221 86885410 -34958446 + B2_Mm1t SINE B2 1 191 -2 1 1247 298 295 93 111 chr11 86885452 86885677 -34958179 + B4 SINE B4 59 279 -13 1 1247 746 154 79 22 chr11 86885751 86885890 -34957966 + B1_Mus2 SINE Alu 1 147 0 1 1247 346 282 126 0 chr11 86885994 86886097 -34957759 + B1F2 SINE Alu 29 144 -5 1 1247 1696 21 0 0 chr11 86886263 86886451 -34957405 + B2_Mm1a SINE B2 2 189 -4 1 1247 212 200 73 0 chr11 86888129 86888184 -34955672 - PB1D10 SINE Alu 0 117 59 1 1247 446 258 8 16 chr11 86888135 86888257 -34955599 - ID_B1 SINE B4 -6 218 98 1 1247 212 288 17 0 chr11 86888299 86888358 -34955498 + ID4 SINE ID 3 62 -21 1 1247 362 185 10 52 chr11 86888354 86888451 -34955405 - PB1D9 SINE Alu -1 119 27 1 1247 197 232 14 0 chr11 86888469 86888538 -34955318 + CT-rich Low_complexity Low_complexity 1 70 0 1 1247 339 186 174 0 chr11 86888539 86888625 -34955231 - B1_Mur1 SINE Alu -9 140 40 1 1247 247 359 0 11 chr11 86888686 86888779 -34955077 - PB1 SINE Alu -32 95 4 1 1247 442 241 37 9 chr11 86889186 86889295 -34954561 + B1F1 SINE Alu 1 112 -37 1 1247 224 217 0 21 chr11 86889444 86889491 -34954365 + B3 SINE B2 1 46 -170 1 1247 604 112 22 0 chr11 86889499 86889588 -34954268 - 4.5SRNA scRNA scRNA -3 91 1 1 1247 189 130 35 53 chr11 86889592 86889649 -34954207 + CT-rich Low_complexity Low_complexity 1 56 0 1 1247 380 125 365 0 chr11 86889682 86889786 -34954070 - B1_Mur4 SINE Alu 0 150 9 1 1247 886 197 61 17 chr11 86889790 86889971 -34953885 + B3 SINE B2 27 215 -1 1 1247 526 215 122 8 chr11 86889974 86890105 -34953751 + B1_Mur2 SINE Alu 3 148 -1 1 1247 1198 81 46 11 chr11 86890115 86890290 -34953566 + B2_Mm2 SINE B2 1 181 -14 1 1247 717 218 24 29 chr11 86890290 86890460 -34953396 + B3 SINE B2 37 205 -11 1 1247 286 262 9 78 chr11 86890470 86890488 -34953368 + MT2B LTR ERVL 150 159 -442 1 1247 661 140 26 0 chr11 86890488 86890602 -34953254 + B1_Mur2 SINE Alu 4 120 -29 1 1247 299 324 71 9 chr11 86890670 86890782 -34953074 - ID_B1 SINE B4 -22 202 84 1 1247 542 148 119 9 chr11 86890923 86891032 -34952824 + B1_Mus1 SINE Alu 11 131 -17 1 1247 333 252 83 18 chr11 86891028 86891137 -34952719 - B3 SINE B2 -100 116 1 1 1247 419 104 13 0 chr11 86891855 86891911 -34951945 + (TTTTTG)n Simple_repeat Simple_repeat 4 59 0 1 1247 806 149 42 14 chr11 86891911 86892054 -34951802 - B1_Mus2 SINE Alu 0 147 1 1 1247 419 104 13 0 chr11 86892054 86892074 -34951782 + (TTTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1247 267 250 39 39 chr11 86892884 86892988 -34950868 + B1_Mur2 SINE Alu 45 148 -1 1 1247 514 282 179 11 chr11 86893033 86893223 -34950633 + ID_B1 SINE B4 2 223 -1 1 1247 1168 68 88 33 chr11 86893286 86893468 -34950388 + B2_Mm2 SINE B2 1 192 -3 1 1247 195 42 0 0 chr11 86893613 86893637 -34950219 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1 1247 269 342 8 50 chr11 86894641 86894761 -34949095 + ID_B1 SINE B4 82 196 -28 1 1247 1242 54 0 0 chr11 86895023 86895170 -34948686 + B1_Mus2 SINE Alu 1 147 0 1 1247 380 208 56 6 chr11 86895321 86895439 -34948417 + B3A SINE B2 1 126 -69 1 1247 208 289 11 22 chr11 86895574 86895666 -34948190 + CT-rich Low_complexity Low_complexity 1 91 0 1 1247 2721 117 221 0 chr11 86895777 86896256 -34947600 + RMER4B LTR ERVK 1 585 0 1 1247 219 221 208 10 chr11 86896343 86896439 -34947417 + B3 SINE B2 100 214 -2 1 1247 378 159 14 0 chr11 86896544 86896613 -34947243 + PB1D9 SINE Alu 1 70 -50 1 1247 471 141 0 0 chr11 86896678 86896756 -34947100 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1247 1652 47 0 0 chr11 86896891 86897082 -34946774 + B2_Mm1t SINE B2 2 192 -1 1 1247 247 203 117 17 chr11 86897498 86897558 -34946298 + PB1D9 SINE Alu 48 113 -7 1 1247 344 250 58 0 chr11 86897808 86897912 -34945944 + RSINE1 SINE B4 54 163 -2 1 1247 542 173 17 43 chr11 86898017 86898132 -34945724 + B1F2 SINE Alu 36 147 -2 1 1247 317 271 49 43 chr11 86898261 86898423 -34945433 + RSINE1 SINE B4 2 164 -1 1 155 684 174 6 13 chr11 86900610 86900767 -34943089 + CT-rich Low_complexity Low_complexity 1 156 0 1 1248 237 189 49 86 chr11 86900829 86900910 -34942946 + PB1 SINE Alu 50 127 0 1 1248 396 0 0 0 chr11 86901038 86901082 -34942774 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1248 729 240 28 22 chr11 86901117 86901296 -34942560 + ID_B1 SINE B4 24 203 -21 1 1248 843 70 94 0 chr11 86901305 86901433 -34942423 + B1_Mus2 SINE Alu 8 147 0 1 1248 690 107 0 26 chr11 86901493 86901608 -34942248 + B1_Mur4 SINE Alu 38 149 -1 1 1248 346 182 15 0 chr11 86901672 86901738 -34942118 - ID4 SINE ID -6 77 11 1 1248 217 257 0 125 chr11 86901793 86901873 -34941983 - ID_B1 SINE B4 -67 157 88 1 1248 952 117 58 0 chr11 86901929 86902066 -34941790 + B1_Mm SINE Alu 1 145 -2 1 1248 519 17 0 0 chr11 86902069 86902129 -34941727 + (GGA)n Simple_repeat Simple_repeat 3 62 0 1 1248 337 311 0 46 chr11 86902350 86902458 -34941398 - RSINE1 SINE B4 -61 104 2 1 1248 518 191 8 60 chr11 86902516 86902633 -34941223 + PB1D9 SINE Alu 9 119 -1 1 1248 540 61 40 20 chr11 86902747 86902847 -34941009 + L1_Mus1 LINE L1 6466 6567 0 1 1248 1424 55 39 11 chr11 86902925 86903107 -34940749 - B2_Mm2 SINE B2 -8 187 1 1 1248 303 258 163 10 chr11 86903130 86903228 -34940628 - PB1D10 SINE Alu 0 117 5 1 1248 213 246 38 76 chr11 86903567 86903646 -34940210 + ID SINE ID 1 76 -148 1 1248 314 266 210 0 chr11 86904030 86904154 -34939702 - MTE2b LTR MaLR -229 150 1 1 1248 243 271 0 0 chr11 86904189 86904248 -34939608 - ID4_ SINE ID -10 73 15 1 1248 299 278 0 40 chr11 86904375 86904476 -34939380 - MER53 DNA hAT -96 97 1 1 1248 268 262 66 0 chr11 86904692 86904753 -34939103 + ID4_ SINE ID 3 67 -16 1 1248 230 206 0 16 chr11 86904757 86904821 -34939035 + GA-rich Low_complexity Low_complexity 3 65 0 1 1248 456 237 0 10 chr11 86904931 86905029 -34938827 - RSINE1 SINE B4 -67 98 2 1 1248 239 349 9 44 chr11 86905523 86905637 -34938219 + MLT1J LTR MaLR 228 337 -175 1 1248 372 256 54 0 chr11 86905642 86905748 -34938108 + B1F SINE Alu 6 124 -3 1 1248 465 19 0 0 chr11 86905748 86905802 -34938054 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 1 1248 234 136 0 0 chr11 86905807 86905851 -34938005 + (CAG)n Simple_repeat Simple_repeat 1 44 0 1 1248 389 236 4 61 chr11 86905960 86906061 -34937795 + B1_Mur1 SINE Alu 26 149 0 1 1248 278 284 15 0 chr11 86906102 86906169 -34937687 + BC1_Mm scRNA scRNA 4 71 -81 1 1248 270 0 0 0 chr11 86906172 86906202 -34937654 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1248 1022 137 0 0 chr11 86906410 86906556 -34937300 - B1_Mus2 SINE Alu 0 147 2 1 1248 272 146 0 0 chr11 86907404 86907445 -34936411 + B3 SINE B2 1 41 -175 1 1248 967 92 8 0 chr11 86907445 86907575 -34936281 + Lx2 LINE L1 6512 6642 -355 1 1248 1414 119 4 42 chr11 86907576 86907813 -34936043 + Lx LINE L1 6427 6654 0 1 1248 644 120 81 22 chr11 86907813 86907949 -34935907 + B2_Mm2 SINE B2 51 194 -1 1 1248 1142 62 14 0 chr11 86907949 86908094 -34935762 + B1_Mm SINE Alu 1 147 0 1 1248 184 373 0 26 chr11 86908132 86908209 -34935647 + L2b LINE L2 3282 3356 -19 1 1248 260 307 0 51 chr11 86908383 86908462 -34935394 - ID4 SINE ID -4 79 5 1 1248 1425 208 218 24 chr11 86908499 86908922 -34934934 - RLTR19C LTR ERVK -1 505 1 1 1248 396 254 50 78 chr11 86909006 86909147 -34934709 - B1F1 SINE Alu -11 137 1 1 1248 253 333 36 0 chr11 86909073 86909157 -34934699 - B4A SINE B4 -125 167 81 1 1248 943 149 0 0 chr11 86909184 86909325 -34934531 - B1_Mus1 SINE Alu -7 141 1 1 1248 555 141 0 0 chr11 86909347 86909439 -34934417 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 1 1248 1289 125 5 25 chr11 86909443 86909640 -34934216 - B2_Mm2 SINE B2 -1 194 2 1 1248 1079 56 0 0 chr11 86909665 86909807 -34934049 - B1_Mm SINE Alu 0 147 6 1 1248 495 273 73 34 chr11 86909808 86909992 -34933864 - B3A SINE B2 -31 185 1 1 1248 814 164 0 14 chr11 86910027 86910169 -34933687 + B1_Mur4 SINE Alu 11 150 0 1 1248 1219 54 0 0 chr11 86910796 86910943 -34932913 + B1_Mus2 SINE Alu 1 147 0 1 1248 226 125 20 20 chr11 86910971 86911020 -34932836 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1 1248 534 160 11 0 chr11 86911093 86911187 -34932669 - B1_Mus1 SINE Alu -30 118 24 1 1248 584 205 16 49 chr11 86911221 86911344 -34932512 + PB1D9 SINE Alu 2 120 0 1 1248 239 277 0 144 chr11 86911373 86911470 -34932386 - MTEb LTR MaLR -90 289 207 1 1248 1171 57 0 0 chr11 86911495 86911635 -34932221 + B1_Mus1 SINE Alu 1 140 -8 1 1248 432 0 0 0 chr11 86911636 86911684 -34932172 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1248 1277 102 43 0 chr11 86911707 86911894 -34931962 + B2_Mm2 SINE B2 1 195 0 1 1248 416 297 0 39 chr11 86911909 86912063 -34931793 + RSINE1 SINE B4 4 151 -14 1 1248 21 36 0 0 chr11 86912094 86912122 -34931734 + AT_rich Low_complexity Low_complexity 1 28 0 1 1248 420 238 89 8 chr11 86912449 86912572 -34931284 - B1F SINE Alu -4 145 13 1 1248 781 123 0 0 chr11 86912578 86912700 -34931156 + B1_Mur4 SINE Alu 1 122 -28 1 1248 197 65 0 31 chr11 86912709 86912741 -34931115 + (TAAG)n Simple_repeat Simple_repeat 2 32 0 1 1248 593 269 7 0 chr11 86913107 86913248 -34930608 - B1F1 SINE Alu -7 142 1 1 1248 1071 64 217 0 chr11 86913252 86913409 -34930447 - B2_Mm2 SINE B2 -4 191 1 1 1248 1667 11 21 0 chr11 86913422 86913611 -34930245 - B2_Mm1a SINE B2 0 193 1 1 1248 699 225 154 0 chr11 86913736 86913918 -34929938 + B3 SINE B2 2 211 -5 1 1248 767 196 201 6 chr11 86913946 86914120 -34929736 - B3 SINE B2 -8 208 1 1 1248 297 298 78 9 chr11 86914158 86914273 -34929583 - ID_B1 SINE B4 -3 221 99 1 1248 297 0 0 0 chr11 86914338 86914371 -34929485 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1248 190 91 43 43 chr11 86914374 86914420 -34929436 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1 1248 371 256 76 8 chr11 86914427 86914545 -34929311 + B1F1 SINE Alu 23 148 -1 1 1248 437 278 43 0 chr11 86914612 86914727 -34929129 + PB1 SINE Alu 6 125 -2 1 1248 387 127 0 0 chr11 86914938 86915001 -34928855 + (GGA)n Simple_repeat Simple_repeat 1 63 0 1 1248 342 315 9 18 chr11 86915214 86915324 -34928532 - PB1D7 SINE Alu 0 120 12 1 1248 217 243 26 51 chr11 86915367 86915445 -34928411 + B3A SINE B2 2 77 -121 1 1248 265 254 104 0 chr11 86915546 86915613 -34928243 - ID2 SINE ID -5 78 5 1 1248 1230 48 0 0 chr11 86915759 86915905 -34927951 + B1_Mm SINE Alu 2 147 0 1 1248 724 261 8 8 chr11 86915917 86916125 -34927731 - B3A SINE B2 -2 214 7 1 1248 560 272 25 66 chr11 86916349 86916546 -34927310 - B3A SINE B2 -9 189 1 1 1248 1136 41 13 40 chr11 86917232 86917383 -34926473 + B1_Mus2 SINE Alu 1 147 0 1 1248 189 0 0 0 chr11 86917383 86917404 -34926452 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1248 642 191 114 0 chr11 86917415 86917546 -34926310 + B1F2 SINE Alu 2 147 -2 1 1248 328 189 0 42 chr11 86917579 86917651 -34926205 + PB1D9 SINE Alu 52 120 0 1 1248 22 0 0 0 chr11 86917709 86917731 -34926125 + AT_rich Low_complexity Low_complexity 1 22 0 1 1248 605 222 0 22 chr11 86917870 86918008 -34925848 - B1F2 SINE Alu 0 149 15 1 1248 275 298 87 0 chr11 86918069 86918173 -34925683 - B3A SINE B2 -18 180 68 1 1248 717 161 0 0 chr11 86918165 86918283 -34925573 - B1_Mur4 SINE Alu -32 118 1 1 1248 314 230 11 65 chr11 86918200 86918293 -34925563 - B4A SINE B4 -125 167 80 1 1248 269 278 25 25 chr11 86918492 86918580 -34925276 + B1F1 SINE Alu 40 128 -22 1 1248 240 35 0 0 chr11 86918932 86918961 -34924895 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1248 563 262 68 14 chr11 86918962 86919109 -34924747 - B3A SINE B2 -42 156 2 1 1248 270 307 39 10 chr11 86919167 86919269 -34924587 - ID_B1 SINE B4 -4 220 116 1 1248 709 70 0 0 chr11 86919276 86919376 -34924480 + B1_Mus2 SINE Alu 1 100 -47 1 1248 1074 189 34 19 chr11 86919676 86919881 -34923975 - B3 SINE B2 -8 208 1 1 1248 306 309 9 43 chr11 86920069 86920184 -34923672 + PB1D7 SINE Alu 3 113 -7 1 1248 289 240 63 63 chr11 86920199 86920310 -34923546 + PB1 SINE Alu 17 127 0 1 1248 1078 103 0 0 chr11 86920975 86921121 -34922735 + B1_Mus1 SINE Alu 1 146 -2 1 1248 219 88 0 0 chr11 86921121 86921155 -34922701 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1248 257 295 42 55 chr11 86921732 86921897 -34921959 - MER5A1 DNA MER1_type -1 165 3 1 1248 183 80 0 0 chr11 86924040 86924065 -34919791 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 1 1248 1177 115 27 16 chr11 86925586 86925772 -34918084 - B2_Mm2 SINE B2 -7 188 1 1 1248 809 209 96 0 chr11 86925901 86926088 -34917768 - B3 SINE B2 -6 210 6 1 1248 631 229 76 32 chr11 86926985 86927170 -34916686 + B3A SINE B2 1 193 -5 1 1248 1040 149 66 41 chr11 86927228 86927424 -34916432 - RMER1B Other Other -9 1057 857 1 1248 590 256 188 24 chr11 86927449 86927898 -34915958 - L1ME1 LINE L1 -3 6159 5622 1 1248 391 176 51 71 chr11 86927920 86928018 -34915838 + B1_Mus1 SINE Alu 10 105 -43 1 1248 253 182 103 13 chr11 86928092 86928170 -34915686 - L1ME1 LINE L1 -774 5406 5322 1 1248 526 281 36 46 chr11 86928284 86928478 -34915378 + B3A SINE B2 1 192 -6 1 1248 668 245 66 25 chr11 86928514 86928711 -34915145 - B3 SINE B2 -11 205 1 1 1248 393 299 128 5 chr11 86928832 86929020 -34914836 + ID_B1 SINE B4 9 219 -5 1 1248 404 297 8 8 chr11 86929008 86929127 -34914729 - RSINE1 SINE B4 -43 122 4 1 1248 493 200 150 0 chr11 86929216 86929336 -34914520 - B1_Mur4 SINE Alu -12 138 1 1 1248 646 190 0 0 chr11 86929350 86929466 -34914390 - B1_Mur3 SINE Alu -6 143 28 1 1248 21 71 0 0 chr11 86929543 86929585 -34914271 + AT_rich Low_complexity Low_complexity 1 42 0 1 1248 285 131 0 0 chr11 86929713 86929774 -34914082 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1248 1202 28 14 7 chr11 86929776 86929922 -34913934 - B1_Mus2 SINE Alu 0 147 1 1 1248 581 281 55 49 chr11 86929930 86930237 -34913619 - L1MB8 LINE L1 -296 5882 5574 1 1248 376 275 35 165 chr11 86930266 86930436 -34913420 - B1F SINE Alu 0 149 2 1 1248 236 77 0 64 chr11 86930545 86930603 -34913253 - B1_Mur4 SINE Alu 0 147 99 1 1248 272 228 287 12 chr11 86930614 86930778 -34913078 - L1MB3 LINE L1 -116 6067 5859 1 1248 476 244 87 0 chr11 86930947 86931062 -34912794 + B1_Mur1 SINE Alu 1 125 -24 1 1248 676 65 0 0 chr11 86931414 86931507 -34912349 - B1_Mus2 SINE Alu -19 128 36 1 1248 180 0 0 0 chr11 86931650 86931670 -34912186 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 1248 1176 82 0 0 chr11 86931968 86932115 -34911741 + B1_Mus2 SINE Alu 1 147 0 1 1248 317 245 171 79 chr11 86932138 86932302 -34911554 + B3A SINE B2 1 179 -19 1 1248 628 221 8 8 chr11 86932389 86932521 -34911335 - B1_Mur2 SINE Alu 0 149 18 1 1248 25 51 0 0 chr11 86932548 86932587 -34911269 + AT_rich Low_complexity Low_complexity 1 39 0 1 1248 364 307 35 9 chr11 86933419 86933534 -34910322 + PB1D7 SINE Alu 3 120 0 1 1248 303 96 0 0 chr11 86933534 86933586 -34910270 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1248 598 295 29 6 chr11 86933721 86933895 -34909961 + B3 SINE B2 1 178 -38 1 1248 993 109 73 94 chr11 86934530 86934557 -34909299 - B2_Mm2 SINE B2 -4 191 163 1 1248 1078 70 7 27 chr11 86934557 86934705 -34909151 + B1_Mus2 SINE Alu 2 146 -1 1 1248 993 109 73 94 chr11 86934705 86934869 -34908987 - B2_Mm2 SINE B2 -33 162 4 1 1248 818 111 79 0 chr11 86934924 86935050 -34908806 - B1_Mus1 SINE Alu -12 136 1 1 1248 222 62 0 0 chr11 86935050 86935082 -34908774 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1248 552 168 29 10 chr11 86935893 86935995 -34907861 - B1_Mur1 SINE Alu -1 148 45 1 1248 274 341 121 0 chr11 86936024 86936156 -34907700 - ID_B1 SINE B4 -9 215 68 1 1248 260 286 13 25 chr11 86936517 86936596 -34907260 - ID4_ SINE ID 0 83 6 1 1248 228 163 0 0 chr11 86936604 86936647 -34907209 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1 1248 244 322 33 0 chr11 86936647 86936737 -34907119 - PB1D7 SINE Alu -6 114 22 1 1248 481 197 75 25 chr11 86936759 86936879 -34906977 - B1_Mur1 SINE Alu -1 148 23 1 1248 1162 68 7 0 chr11 86936911 86937058 -34906798 + B1_Mus1 SINE Alu 1 148 0 1 1248 1103 186 49 0 chr11 86937076 86937280 -34906576 - B3 SINE B2 0 216 3 1 1248 346 268 124 0 chr11 86937288 86937385 -34906471 - PB1D7 SINE Alu -6 114 6 1 1248 246 246 15 0 chr11 86937407 86937472 -34906384 - PB1D9 SINE Alu -53 67 2 1 1248 1013 126 0 18 chr11 86937788 86937958 -34905898 + B2_Mm2 SINE B2 10 176 -19 1 1248 221 247 35 69 chr11 86938579 86938666 -34905190 - PB1D10 SINE Alu -3 114 31 1 1248 321 208 154 81 chr11 86938958 86939094 -34904762 - B1F2 SINE Alu -2 147 2 1 1248 292 299 111 9 chr11 86939138 86939246 -34904610 + B1F1 SINE Alu 5 123 -26 1 1248 469 225 81 0 chr11 86939358 86939469 -34904387 - PB1D9 SINE Alu 0 120 1 1 1248 215 254 0 0 chr11 86939621 86939676 -34904180 - B3A SINE B2 -143 55 1 1 1248 225 0 0 0 chr11 86940168 86940193 -34903663 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1248 213 108 0 0 chr11 86940500 86940537 -34903319 + (CCCCG)n Simple_repeat Simple_repeat 2 38 0 1 1248 493 195 97 32 chr11 86941939 86942093 -34901763 - RSINE1 SINE B4 0 165 2 1 1248 566 248 35 0 chr11 86942122 86942263 -34901593 + B1_Mur1 SINE Alu 3 148 -1 1 1248 715 247 83 40 chr11 86942573 86942851 -34901005 - B4 SINE B4 0 292 3 1 1248 572 186 146 8 chr11 86943019 86943149 -34900707 - B1_Mur1 SINE Alu 0 149 2 1 1248 710 196 7 34 chr11 86943384 86943532 -34900324 - B1_Mur3 SINE Alu 0 149 6 1 1248 1232 14 7 7 chr11 86943668 86943815 -34900041 - B1_Mus2 SINE Alu 0 147 1 1 1248 600 263 109 0 chr11 86943890 86944065 -34899791 - B3 SINE B2 -20 196 3 1 1248 804 199 0 14 chr11 86944102 86944245 -34899611 - B1_Mur3 SINE Alu -8 141 1 1 1248 496 147 38 38 chr11 86944729 86944835 -34899021 + PB1D9 SINE Alu 10 115 -5 1 1248 826 118 65 22 chr11 86945034 86945172 -34898684 + B1_Mur4 SINE Alu 1 144 -6 1 1248 241 348 43 11 chr11 86945209 86945302 -34898554 - MIRb SINE MIR -154 114 19 1 1248 1173 49 21 0 chr11 86945664 86945807 -34898049 - B1_Mus1 SINE Alu -2 146 1 1 1248 249 163 0 65 chr11 86946003 86946049 -34897807 - ID4 SINE ID -24 59 17 1 1248 263 288 35 70 chr11 86946532 86946618 -34897238 - PB1D10 SINE Alu -32 85 3 1 1248 354 280 133 47 chr11 86946649 86946880 -34896976 - RSINE1 SINE B4 0 292 36 1 1248 1119 88 0 7 chr11 86947008 86947146 -34896710 + B1_Mus2 SINE Alu 1 138 -9 1 1248 207 0 0 0 chr11 86947146 86947169 -34896687 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1248 267 303 212 11 chr11 86947195 86947482 -34896374 - L2 LINE L2 -410 3009 2665 1 1248 466 258 11 0 chr11 86947698 86947791 -34896065 + PB1D7 SINE Alu 14 107 -13 1 1248 227 189 0 19 chr11 86947796 86947850 -34896006 + GA-rich Low_complexity Low_complexity 3 55 0 1 1248 696 241 7 0 chr11 86947892 86948037 -34895819 - B1_Mur2 SINE Alu -3 146 1 1 1248 1447 73 16 0 chr11 86948222 86948413 -34895443 + B2_Mm2 SINE B2 1 194 -1 1 1248 1228 97 5 22 chr11 86948424 86948630 -34895226 + B2_Mm1a SINE B2 1 195 0 1 1248 1073 38 69 0 chr11 86948658 86948789 -34895067 + B1_Mm SINE Alu 1 140 -7 1 1248 180 0 0 0 chr11 86948791 86948811 -34895045 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1248 268 280 188 23 chr11 86949300 86949428 -34894428 + B1F SINE Alu 1 149 0 1 1248 194 370 36 24 chr11 86949440 86949523 -34894333 - L2b LINE L2 -214 3161 3078 1 1248 1569 47 0 5 chr11 86949560 86949754 -34894102 - B2_Mm1a SINE B2 0 193 1 1 1248 606 305 17 35 chr11 86950139 86950312 -34893544 - ID_B1 SINE B4 -4 220 51 1 1248 27 52 0 17 chr11 86950431 86950460 -34893396 + AT_rich Low_complexity Low_complexity 1 29 0 1 1248 1185 74 0 0 chr11 86950460 86950608 -34893248 - B1_Mus1 SINE Alu 0 148 1 1 1248 27 52 0 17 chr11 86950608 86950637 -34893219 + AT_rich Low_complexity Low_complexity 1 29 0 1 1248 1171 120 21 11 chr11 86951392 86951578 -34892278 - B2_Mm1t SINE B2 -4 189 2 1 1248 452 283 38 0 chr11 86951612 86951718 -34892138 + PB1D7 SINE Alu 1 110 -10 1 1248 246 341 71 31 chr11 86951874 86952001 -34891855 - ID_B1 SINE B4 -14 210 79 1 1248 351 135 174 9 chr11 86952008 86952120 -34891736 - B2_Mm2 SINE B2 0 195 47 1 1248 1229 97 23 0 chr11 86952201 86952377 -34891479 - B2_Mm1t SINE B2 -13 180 1 1 1248 4142 110 95 10 chr11 86952514 86953211 -34890645 + RMER6A LTR ERVK 1 756 0 1 1248 435 261 107 16 chr11 86953742 86953863 -34889993 - B1F SINE Alu 0 149 18 1 1248 356 316 71 35 chr11 86953863 86953883 -34889973 - ID_B1 SINE B4 0 224 79 1 1248 183 80 0 0 chr11 86954317 86954342 -34889514 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1248 1208 41 0 0 chr11 86954342 86954487 -34889369 - B1_Mus1 SINE Alu 0 148 4 1 1248 596 256 30 42 chr11 86954969 86955136 -34888720 + B3A SINE B2 12 176 -22 1 1248 406 257 0 110 chr11 86955227 86955345 -34888511 - PB1D10 SINE Alu 0 117 13 1 1248 510 257 0 56 chr11 86955767 86955911 -34887945 - MLT1B LTR MaLR -40 350 215 1 1248 28 29 0 0 chr11 86956162 86956197 -34887659 + AT_rich Low_complexity Low_complexity 1 35 0 1 1248 1250 41 0 0 chr11 86956197 86956343 -34887513 - B1_Mm SINE Alu 0 147 2 1 1248 204 179 0 0 chr11 86956906 86956945 -34886911 + T-rich Low_complexity Low_complexity 1 39 0 1 1248 296 225 24 48 chr11 86956945 86957029 -34886827 - ID4_ SINE ID 0 83 2 1 1248 405 221 11 55 chr11 86957233 86957324 -34886532 - PB1D10 SINE Alu -14 103 17 1 1248 1187 83 32 42 chr11 86957356 86957545 -34886311 + B2_Mm2 SINE B2 1 187 -8 1 1248 1202 48 0 0 chr11 86957602 86957749 -34886107 - B1_Mus2 SINE Alu 0 147 1 1 1248 233 344 158 55 chr11 86957749 86957901 -34885955 - Tigger13a DNA MER2_type -410 361 176 1 1248 234 338 0 13 chr11 86957901 86957979 -34885877 - ID4 SINE ID -2 81 5 1 1248 233 344 158 55 chr11 86957979 86958146 -34885710 - Tigger13a DNA MER2_type -596 175 8 1 1248 590 218 92 150 chr11 86958274 86958501 -34885355 + B3 SINE B2 3 216 0 1 1248 189 94 0 0 chr11 86958553 86958585 -34885271 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1248 771 148 23 0 chr11 86958623 86958751 -34885105 - B1_Mus2 SINE Alu -16 131 1 1 1248 384 269 207 7 chr11 86959270 86959405 -34884451 - RSINE1 SINE B4 0 165 4 1 1248 955 222 146 25 chr11 86959473 86959713 -34884143 - B4 SINE B4 -23 269 1 1 1248 989 75 0 0 chr11 86959840 86959973 -34883883 - B1_Mus1 SINE Alu 0 148 16 1 1248 564 331 19 0 chr11 86959985 86960139 -34883717 - RSINE1 SINE B4 0 165 9 1 1248 447 273 27 18 chr11 86960141 86960253 -34883603 - RSINE1 SINE B4 -38 127 15 1 1248 693 137 20 0 chr11 86960823 86960925 -34882931 + B1_Mus2 SINE Alu 19 122 -25 1 1248 452 254 60 60 chr11 86961142 86961259 -34882597 - PB1D9 SINE Alu 0 120 4 1 1248 39 22 0 0 chr11 86961492 86961538 -34882318 + AT_rich Low_complexity Low_complexity 1 46 0 1 1248 1115 88 0 7 chr11 86961538 86961687 -34882169 - B1_Mus1 SINE Alu 0 148 1 1 1248 594 287 15 39 chr11 86961694 86961897 -34881959 - B3A SINE B2 0 198 1 1 1248 1200 41 0 7 chr11 86961917 86962064 -34881792 - B1_Mus2 SINE Alu 0 147 2 1 1248 238 296 0 53 chr11 86962065 86962179 -34881677 - B4 SINE B4 -64 228 121 1 1248 22 0 0 0 chr11 86962305 86962327 -34881529 + AT_rich Low_complexity Low_complexity 1 22 0 1 1248 346 250 136 17 chr11 86962935 86963053 -34880803 + B1F1 SINE Alu 3 134 -15 1 1248 862 230 114 60 chr11 86963212 86963563 -34880293 + ORR1D1 LTR MaLR 1 370 -4 1 1248 745 214 80 48 chr11 86964043 86964230 -34879626 - B3A SINE B2 -5 193 1 1 1248 261 0 0 0 chr11 86964411 86964440 -34879416 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1248 273 155 0 0 chr11 86964440 86964498 -34879358 + GA-rich Low_complexity Low_complexity 2 59 0 1 1248 1183 238 3 118 chr11 86964498 86964870 -34878986 + RMER10B LTR ERVL 1 329 -69 1 1248 658 121 16 8 chr11 86964898 86965023 -34878833 + (TCCCC)n Simple_repeat Simple_repeat 4 129 0 1 1248 362 66 33 0 chr11 86965032 86965093 -34878763 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 1 1248 733 170 0 81 chr11 86965094 86965254 -34878602 - B1_Mur4 SINE Alu -1 149 3 1 1248 27 0 0 0 chr11 86965410 86965437 -34878419 + AT_rich Low_complexity Low_complexity 1 27 0 1 1248 366 294 32 32 chr11 86965536 86965659 -34878197 - B1F SINE Alu -3 146 24 1 1248 317 299 110 13 chr11 86966022 86966249 -34877607 - L1ME2 LINE L1 -267 5897 5649 1 1248 420 107 340 28 chr11 86966277 86966383 -34877473 - B2_Mm2 SINE B2 -10 185 47 1 1248 1139 136 11 0 chr11 86966449 86966625 -34877231 - B2_Mm1t SINE B2 -14 179 2 1 1248 30 0 0 0 chr11 86966628 86966658 -34877198 + AT_rich Low_complexity Low_complexity 1 30 0 1 1248 1383 87 16 0 chr11 86966658 86966841 -34877015 - B2_Mm2 SINE B2 -8 187 2 1 1248 237 333 140 85 chr11 86966856 86967020 -34876836 - B3A SINE B2 -24 174 2 1 1248 314 291 132 4 chr11 86967023 86967296 -34876560 - L1ME2 LINE L1 -582 5597 5290 1 1248 1503 208 44 26 chr11 86967330 86967671 -34876185 + MTD LTR MaLR 43 389 -30 1 1248 305 54 149 0 chr11 86967672 86967746 -34876110 + CT-rich Low_complexity Low_complexity 3 87 0 1 1248 1087 38 0 0 chr11 86967766 86967898 -34875958 - B1_Mus1 SINE Alu -16 132 1 1 1248 244 222 91 65 chr11 86967966 86968043 -34875813 + MER97c DNA MER1_type? 420 498 -592 1 1248 1046 101 7 0 chr11 86968077 86968226 -34875630 - B1_Mur4 SINE Alu 0 150 1 1 1248 207 0 0 0 chr11 86968235 86968258 -34875598 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1248 903 224 34 10 chr11 86968424 86968631 -34875225 - B3 SINE B2 -3 213 2 1 1248 493 260 129 51 chr11 86968639 86968817 -34875039 - B4 SINE B4 -13 279 88 1 1248 683 187 42 28 chr11 86969356 86969499 -34874357 + B1_Mur1 SINE Alu 5 149 0 1 1248 180 0 0 0 chr11 86970196 86970216 -34873640 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1248 628 222 97 63 chr11 86970403 86970415 -34873441 + RMER6B LTR ERVK 245 256 -205 1 1248 924 86 0 15 chr11 86970415 86970545 -34873311 + B1_Mus2 SINE Alu 2 129 -18 1 1248 628 222 97 63 chr11 86970545 86970653 -34873203 + RMER6B LTR ERVK 257 362 -99 1 1248 414 0 0 0 chr11 86970653 86970699 -34873157 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1248 628 222 97 63 chr11 86970699 86970784 -34873072 + RMER6B LTR ERVK 363 457 -4 1 1248 551 275 0 0 chr11 86971053 86971184 -34872672 - MLT1B LTR MaLR 0 390 260 1 1248 711 233 37 65 chr11 86971494 86971710 -34872146 - B3 SINE B2 -6 210 1 1 1248 770 186 0 0 chr11 86971770 86971899 -34871957 + B3 SINE B2 2 130 -86 1 1248 618 259 91 11 chr11 86972208 86972395 -34871461 - B3 SINE B2 -11 205 4 1 1248 593 272 51 14 chr11 86972443 86972581 -34871275 - ID_B1 SINE B4 -3 221 79 1 1248 233 200 188 0 chr11 86972841 86972926 -34870930 - Lx9 LINE L1 -208 7436 7336 1 1248 663 236 0 0 chr11 86972938 86973048 -34870808 - B1_Mur1 SINE Alu -36 113 4 1 1248 428 248 0 95 chr11 86972944 86973060 -34870796 - MT2B LTR ERVL -341 260 156 1 1248 638 219 0 154 chr11 86973083 86973245 -34870611 - B1_Mur1 SINE Alu -7 142 6 1 1248 358 301 70 9 chr11 86973144 86973258 -34870598 - B4 SINE B4 -93 199 79 1 1248 369 0 0 0 chr11 86973527 86973568 -34870288 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 1 1248 1418 39 39 0 chr11 86973689 86973870 -34869986 + L1_Mus1 LINE L1 6380 6567 0 1 1248 491 272 39 31 chr11 86973890 86974019 -34869837 - ID_B1 SINE B4 -13 211 82 1 1248 446 328 8 15 chr11 86974323 86974456 -34869400 - RSINE1 SINE B4 -31 134 3 1 1248 185 0 40 0 chr11 86974779 86974804 -34869052 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1248 669 142 19 0 chr11 86974806 86974912 -34868944 - PB1D9 SINE Alu -12 108 1 1 1248 1581 211 88 40 chr11 86975243 86975585 -34868271 + MTD LTR MaLR 2 365 -54 1 1248 207 0 0 0 chr11 86975585 86975608 -34868248 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1248 1114 37 7 0 chr11 86975609 86975744 -34868112 - B1_Mus1 SINE Alu -11 137 2 1 1248 1581 211 88 40 chr11 86975744 86975798 -34868058 + MTD LTR MaLR 366 419 0 1 1248 195 42 0 0 chr11 86975947 86975971 -34867885 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1248 481 304 0 0 chr11 86976488 86976600 -34867256 - ID_B1 SINE B4 0 224 113 1 1248 213 264 0 0 chr11 86976996 86977049 -34866807 + ID4_ SINE ID 2 54 -29 1 1248 757 208 21 0 chr11 86977584 86977728 -34866128 + B1_Mur3 SINE Alu 2 148 -1 1 1248 1046 97 7 0 chr11 86978016 86978161 -34865695 - B1_Mm SINE Alu 0 147 2 1 1248 727 189 6 129 chr11 86978192 86978362 -34865494 - B1_Mur4 SINE Alu 0 150 2 1 1248 22 0 0 0 chr11 86978362 86978384 -34865472 + AT_rich Low_complexity Low_complexity 1 22 0 1 1248 841 232 61 47 chr11 86978396 86978609 -34865247 - B3 SINE B2 0 216 1 1 1248 405 0 0 0 chr11 86978704 86978749 -34865107 + (TCCA)n Simple_repeat Simple_repeat 2 46 0 1 1248 373 208 90 13 chr11 86978749 86978827 -34865029 - B1_Mur1 SINE Alu -12 137 54 1 1248 557 350 61 29 chr11 86979047 86979104 -34864752 - B4 SINE B4 -4 288 222 1 1248 753 259 5 30 chr11 86979104 86979303 -34864553 - B3A SINE B2 -3 195 2 1 1248 557 350 61 29 chr11 86979303 86979522 -34864334 - B4 SINE B4 -71 221 3 1 1248 240 321 0 0 chr11 86979668 86979721 -34864135 - tRNA-Ala-GCY_ tRNA tRNA -7 68 16 1 1248 966 200 34 24 chr11 86980411 86980616 -34863240 + B3 SINE B2 3 209 -7 1 1248 1117 80 46 7 chr11 86980621 86980796 -34863060 - B2_Mm2 SINE B2 -11 182 1 1 1248 2344 147 50 7 chr11 86981061 86981465 -34862391 - MTC LTR MaLR 0 421 1 1 1248 374 250 110 0 chr11 86981517 86981617 -34862239 - PB1D10 SINE Alu -6 111 1 1 1248 235 269 134 0 chr11 86981673 86981740 -34862116 - ID4 SINE ID -6 77 2 1 1248 390 319 50 14 chr11 86981772 86981912 -34861944 - B1F SINE Alu -4 145 1 1 1248 618 252 32 0 chr11 86982081 86982204 -34861652 + RSINE1 SINE B4 3 129 -36 1 1248 524 171 211 0 chr11 86982266 86982389 -34861467 + B1_Mur3 SINE Alu 1 149 0 1 1248 227 312 57 47 chr11 86982418 86982472 -34861384 - Charlie1a DNA MER1_type -193 1262 1204 1 1248 846 253 106 21 chr11 86982472 86982811 -34861045 - ORR1D2 LTR MaLR 0 370 3 1 1248 227 312 57 47 chr11 86982811 86982968 -34860888 - Charlie1a DNA MER1_type -252 1203 1050 1 1248 409 89 0 0 chr11 86983040 86983096 -34860760 + L1Md_F2 LINE L1 5531 5586 -297 1 1248 8360 35 1 0 chr11 86983096 86984079 -34859777 + L1Md_F2 LINE L1 5587 6570 -12 1 1248 301 216 18 97 chr11 86984079 86984135 -34859721 + L1_Mur1 LINE L1 5590 5636 -250 1 1248 290 263 0 57 chr11 86984324 86984429 -34859427 - L1MB7 LINE L1 -58 6126 6028 1 1248 819 294 59 9 chr11 86984467 86984687 -34859169 + B4 SINE B4 54 284 -8 1 1248 26 50 0 0 chr11 86984797 86984837 -34859019 + AT_rich Low_complexity Low_complexity 1 40 0 1 1248 311 210 96 9 chr11 86984939 86985026 -34858830 - B1_Mur1 SINE Alu -6 143 25 1 1248 684 180 7 52 chr11 86985063 86985198 -34858658 - B1_Mur4 SINE Alu -20 130 2 1 1248 967 236 19 14 chr11 86985200 86985411 -34858445 - B3 SINE B2 0 216 5 1 1248 316 241 157 26 chr11 86985411 86985526 -34858330 - B1_Mur1 SINE Alu -19 130 1 1 1248 243 326 11 23 chr11 86985675 86985763 -34858093 - RMER15 LTR ERVL -113 462 376 1 1248 240 299 12 83 chr11 86985840 86985919 -34857937 - PB1D10 SINE Alu -8 109 37 1 1248 887 172 177 0 chr11 86985919 86986111 -34857745 + URR1A DNA MER1_type 1 226 0 1 1248 497 214 42 48 chr11 86985961 86986128 -34857728 - CYRA11_Mm Unknown Y-chromosome -296 321 156 1 1248 333 0 0 0 chr11 86986200 86986237 -34857619 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1248 913 133 21 14 chr11 86986250 86986395 -34857461 - B1_Mur4 SINE Alu -1 149 4 1 1248 404 308 105 48 chr11 86986670 86987185 -34856671 + L1MEc LINE L1 312 855 -5545 1 1248 662 257 7 20 chr11 86987579 86987726 -34856130 - B1_Mur2 SINE Alu -4 145 1 1 1248 452 269 56 46 chr11 86987973 86988168 -34855688 - RLTR15 LTR ERVK -5 354 158 1 1248 207 237 17 17 chr11 86988202 86988262 -34855594 + T-rich Low_complexity Low_complexity 24 83 0 1 1248 2690 133 37 0 chr11 86988890 86989296 -34854560 + MTC LTR MaLR 1 421 0 1 1248 692 172 253 18 chr11 86989328 86989494 -34854362 + B3 SINE B2 2 206 -10 1 1248 425 321 52 7 chr11 86989549 86989684 -34854172 - ID_B1 SINE B4 -2 222 82 1 1248 496 90 122 11 chr11 86989723 86989813 -34854043 + MTC LTR MaLR 272 371 -50 1 1248 3200 180 92 21 chr11 86989831 86990026 -34853830 + MTC-int LTR MaLR 5 203 -1055 1 1248 1561 48 0 11 chr11 86990026 86990216 -34853640 - B2_Mm1a SINE B2 -5 188 1 1 1248 3200 157 102 16 chr11 86990216 86990873 -34852983 + MTC-int LTR MaLR 204 1258 0 1 1248 1733 194 89 14 chr11 86990873 86991234 -34852622 + MTC LTR MaLR 1 388 -33 1 1248 451 164 12 37 chr11 86991776 86991858 -34851998 + B1_Mus2 SINE Alu 57 136 -11 1 1248 497 338 12 9 chr11 86992181 86992350 -34851506 + ID_B1 SINE B4 83 252 -40 1 1248 607 146 0 0 chr11 86992691 86992787 -34851069 - B1_Mus2 SINE Alu 0 147 52 1 1248 237 242 57 142 chr11 86992692 86992798 -34851058 - B4 SINE B4 -68 224 128 1 1248 619 176 92 35 chr11 86992816 86992957 -34850899 - B1_Mur2 SINE Alu 0 149 1 1 1248 1631 31 0 10 chr11 86993033 86993227 -34850629 + B2_Mm1t SINE B2 1 192 -1 1 1248 1120 62 7 0 chr11 86993299 86993445 -34850411 + B1_Mus1 SINE Alu 2 148 0 1 1248 574 254 185 117 chr11 86993667 86993992 -34849864 + MTE2a LTR MaLR 3 349 -30 1 1248 1171 34 7 27 chr11 86994373 86994523 -34849333 - B1_Mm SINE Alu 0 147 1 1 1248 769 188 7 39 chr11 86994671 86994826 -34849030 - B1_Mur4 SINE Alu 0 150 1 1 1248 1303 175 0 0 chr11 86995453 86995659 -34848197 + B3 SINE B2 1 206 -10 1 1248 1156 54 0 39 chr11 86996076 86996229 -34847627 - B1_Mm SINE Alu 0 147 1 1 1248 573 227 63 25 chr11 86996778 86996936 -34846920 - RSINE1 SINE B4 0 165 2 1 1248 263 297 81 0 chr11 86997030 86997104 -34846752 + ID2 SINE ID 1 80 -3 1 1248 716 131 128 62 chr11 86997243 86997422 -34846434 - B2_Mm2 SINE B2 -3 192 2 1 1248 333 102 169 0 chr11 86997481 86997540 -34846316 - B1_Mur2 SINE Alu -8 141 73 1 1248 917 163 9 0 chr11 86997780 86998005 -34845851 + CT-rich Low_complexity Low_complexity 1 227 0 1 1248 321 175 16 0 chr11 86998026 86998089 -34845767 + MurSatRep1 Unknown Unknown 221 284 -1853 1 1248 1235 113 32 0 chr11 86998109 86998294 -34845562 - B2_Mm1t SINE B2 -2 191 1 1 1248 291 121 13 0 chr11 86999130 86999187 -34844669 - B1_Mur2 SINE Alu -9 140 71 1 1248 367 257 57 74 chr11 86999384 86999506 -34844350 - ID_B1 SINE B4 -26 198 79 1 1248 264 299 18 45 chr11 86999542 86999654 -34844202 - L2 LINE L2 -2028 1391 1283 1 1248 244 273 236 11 chr11 86999750 86999839 -34844017 + PB1D10 SINE Alu 1 109 -8 1 1248 21 71 0 0 chr11 87000156 87000198 -34843658 + AT_rich Low_complexity Low_complexity 1 42 0 1 1248 934 202 115 0 chr11 87000204 87000387 -34843469 + B3 SINE B2 7 210 -6 2 1248 1106 55 0 7 chr11 87000389 87000536 -34843320 + (TTTC)n Simple_repeat Simple_repeat 4 149 0 3 1248 1165 88 0 0 chr11 87000551 87000688 -34843168 - B1_Mus1 SINE Alu -10 138 2 4 1248 407 118 24 32 chr11 87000729 87000812 -34843044 - B1_Mus2 SINE Alu -7 140 35 5 1248 262 341 59 0 chr11 87000864 87000949 -34842907 - RSINE1 SINE B4 -11 154 65 6 1248 764 194 200 0 chr11 87000970 87001145 -34842711 - B3 SINE B2 -6 210 1 7 1248 611 250 45 45 chr11 87001520 87001696 -34842160 - B3 SINE B2 0 216 41 8 1248 1324 101 37 5 chr11 87001708 87001897 -34841959 - B2_Mm2 SINE B2 0 195 1 9 1248 417 20 0 0 chr11 87002184 87002234 -34841622 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1248 343 284 80 73 chr11 87002260 87002397 -34841459 - B1F SINE Alu -11 138 1 1 1248 736 261 35 88 chr11 87002485 87002712 -34841144 - ID_B1 SINE B4 -2 222 8 1 1248 3167 71 8 2 chr11 87002851 87003245 -34840611 - MTA_Mm LTR MaLR 0 396 1 1 1248 21 0 0 0 chr11 87003301 87003322 -34840534 + AT_rich Low_complexity Low_complexity 1 21 0 1 1248 589 248 15 37 chr11 87003361 87003495 -34840361 - RSINE1 SINE B4 -31 134 4 1 1248 1218 29 43 0 chr11 87003912 87004051 -34839805 - B1_Mus2 SINE Alu -2 145 1 1 1248 377 271 5 25 chr11 87004175 87004272 -34839584 + PB1D10 SINE Alu 13 104 -13 1 1248 269 309 18 95 chr11 87004560 87004728 -34839128 - MLT1B LTR MaLR -214 176 22 1 1248 260 222 88 11 chr11 87005094 87005185 -34838671 - MTE-int LTR MaLR -255 1325 1228 1 1248 235 289 123 19 chr11 87005527 87005682 -34838174 - MLT-int LTR MaLR -1038 697 527 2 1248 925 119 15 0 chr11 87005713 87005847 -34838009 - B1_Mur3 SINE Alu -1 148 13 2 1248 455 318 48 43 chr11 87005948 87006303 -34837553 - MLT-int LTR MaLR -1312 423 7 2 1248 195 100 0 0 chr11 87006303 87006333 -34837523 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1248 348 60 0 0 chr11 87006415 87006465 -34837391 - B1_Mus1 SINE Alu -74 74 25 2 1248 26 30 0 0 chr11 87006988 87007021 -34836835 + AT_rich Low_complexity Low_complexity 1 33 0 2 1248 749 207 49 14 chr11 87007058 87007200 -34836656 - B1_Mus1 SINE Alu -1 147 1 2 1248 306 242 15 0 chr11 87007213 87007279 -34836577 - B3A SINE B2 -51 147 81 2 1248 1533 68 11 0 chr11 87007526 87007717 -34836139 - B2_Mm1t SINE B2 0 193 1 2 1248 1313 34 0 0 chr11 87007726 87007872 -34835984 - B1_Mus2 SINE Alu -1 146 1 2 1248 1524 75 5 0 chr11 87008141 87008328 -34835528 + B2_Mm1t SINE B2 2 189 -4 2 1248 194 0 39 0 chr11 87008357 87008383 -34835473 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1248 1261 43 0 0 chr11 87008397 87008538 -34835318 - B1_Mus2 SINE Alu -6 141 1 3 1248 236 222 44 0 chr11 87008628 87008673 -34835183 + ID4 SINE ID 26 72 -11 3 1248 254 288 75 15 chr11 87008957 87009091 -34834765 + L1MC3 LINE L1 7015 7156 -629 3 1248 246 149 0 0 chr11 87009616 87009654 -34834202 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1248 1202 62 14 0 chr11 87009654 87009799 -34834057 + B1_Mus2 SINE Alu 1 147 0 3 1248 246 149 0 0 chr11 87009799 87009807 -34834049 + (A)n Simple_repeat Simple_repeat 1 8 0 3 1248 282 313 71 64 chr11 87009850 87009990 -34833866 - B1_Mm SINE Alu 0 147 7 3 1248 518 303 8 69 chr11 87009866 87009997 -34833859 - ID_B1 SINE B4 -21 203 81 3 1248 327 25 0 0 chr11 87010751 87010791 -34833065 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1248 1293 54 0 0 chr11 87010825 87010972 -34832884 - B1_Mus2 SINE Alu 0 147 1 4 1248 478 272 29 14 chr11 87011162 87011300 -34832556 + B1F2 SINE Alu 10 149 0 4 1248 598 244 8 23 chr11 87011361 87011491 -34832365 + B1_Mur2 SINE Alu 10 137 -12 4 1248 291 260 0 27 chr11 87011698 87011773 -34832083 + ID4_ SINE ID 2 74 -9 4 1248 1001 197 62 5 chr11 87012627 87012836 -34831020 + ORR1C2 LTR MaLR 162 382 -2 4 1248 1333 35 6 29 chr11 87012903 87013078 -34830778 + B2_Mm2 SINE B2 3 173 -22 4 1248 1490 79 26 0 chr11 87013375 87013564 -34830292 + B2_Mm2 SINE B2 1 194 -1 4 1248 326 336 40 34 chr11 87014113 87014139 -34829717 + B4 SINE B4 68 216 -76 4 1248 685 149 82 8 chr11 87014139 87014261 -34829595 + B1_Mus1 SINE Alu 8 138 -10 4 1248 255 61 0 0 chr11 87014281 87014314 -34829542 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1248 741 234 24 37 chr11 87014523 87014687 -34829169 - RSINE1 SINE B4 0 165 4 5 1248 1061 37 15 0 chr11 87015162 87015296 -34828560 - B2_Mm2 SINE B2 -56 139 4 5 1248 23 54 0 0 chr11 87015309 87015346 -34828510 + AT_rich Low_complexity Low_complexity 1 37 0 5 1248 296 266 25 12 chr11 87015346 87015426 -34828430 - RSINE1 SINE B4 -2 163 83 5 1248 189 273 54 18 chr11 87015572 87015628 -34828228 - L2c LINE L2 -214 3173 3116 5 1248 462 176 43 21 chr11 87016071 87016164 -34827692 - B1_Mus2 SINE Alu 0 147 53 5 1248 241 170 55 36 chr11 87016117 87016172 -34827684 - MT2B2 LTR ERVL -326 258 203 5 1248 325 294 36 69 chr11 87016284 87016427 -34827429 + B1F1 SINE Alu 1 139 -10 5 1248 984 30 23 0 chr11 87016559 87016691 -34827165 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 1248 343 188 101 0 chr11 87016699 87016768 -34827088 - B1_Mur2 SINE Alu -32 117 42 5 1248 665 239 7 27 chr11 87016797 87016943 -34826913 - B1_Mus1 SINE Alu -4 144 2 6 1248 497 235 232 73 chr11 87017577 87017990 -34825866 - L1MB2 LINE L1 -235 5936 5458 6 1248 388 292 52 0 chr11 87018036 87018132 -34825724 - PB1D10 SINE Alu -15 102 2 6 1248 859 295 42 32 chr11 87018158 87018564 -34825292 - L1MB7 LINE L1 -299 5885 5476 6 1248 317 200 88 0 chr11 87018561 87018641 -34825215 - L1MB7 LINE L1 -1252 4894 4808 6 1248 289 226 97 0 chr11 87018879 87018941 -34824915 + PB1D7 SINE Alu 17 84 -36 6 1248 536 140 11 0 chr11 87019032 87019125 -34824731 + URR1B DNA MER1_type 87 180 -45 6 1248 271 173 98 0 chr11 87019781 87019842 -34824014 - PB1D10 SINE Alu -50 67 1 6 1248 942 224 20 10 chr11 87019984 87020182 -34823674 + B3 SINE B2 3 202 -14 6 1248 289 213 88 4 chr11 87020572 87020662 -34823194 - B1F SINE Alu -22 98 1 6 1248 366 23 0 0 chr11 87020862 87020905 -34822951 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1248 277 286 113 26 chr11 87021306 87021421 -34822435 + PB1 SINE Alu 1 125 -2 7 1248 281 242 45 0 chr11 87021436 87021502 -34822354 + tRNA-Ala-GCY_ tRNA tRNA 1 69 -6 7 1248 597 80 0 0 chr11 87021589 87021677 -34822179 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 7 1248 21 0 0 0 chr11 87021677 87021698 -34822158 + AT_rich Low_complexity Low_complexity 1 21 0 7 1248 283 258 395 0 chr11 87021706 87021830 -34822026 - B3 SINE B2 -42 174 2 7 1248 250 258 30 0 chr11 87021973 87022039 -34821817 + RMER15 LTR ERVL 403 470 -105 7 1248 1477 174 128 71 chr11 87022074 87022426 -34821430 - ORR1D1 LTR MaLR 0 374 3 7 1248 1310 104 44 0 chr11 87022809 87022992 -34820864 + B2_Mm2 SINE B2 1 191 -4 7 1248 465 163 102 37 chr11 87023577 87023687 -34820169 - PB1D9 SINE Alu 0 120 6 7 1248 1556 44 56 0 chr11 87023722 87023902 -34819954 - B2_Mm1a SINE B2 -2 191 2 7 1248 421 260 119 40 chr11 87023906 87024082 -34819774 - B3A SINE B2 -5 193 4 8 1248 977 90 97 0 chr11 87024517 87024651 -34819205 - B1_Mus1 SINE Alu 0 148 2 8 1248 5701 54 65 15 chr11 87024926 87025663 -34818193 + L1_Mus3 LINE L1 5865 6638 0 8 1248 263 278 80 36 chr11 87026113 87026225 -34817631 - PB1D10 SINE Alu 0 117 1 8 1248 197 143 0 35 chr11 87026247 87026305 -34817551 + T-rich Low_complexity Low_complexity 3 58 0 8 1248 255 297 37 56 chr11 87026722 87026829 -34817027 - B1_Mm SINE Alu -28 119 15 8 1248 378 301 31 54 chr11 87026743 87026873 -34816983 - ID_B1 SINE B4 -49 175 49 8 1248 480 261 9 18 chr11 87026914 87027027 -34816829 - PB1D7 SINE Alu -8 112 1 8 1248 180 77 0 0 chr11 87027058 87027084 -34816772 + (TC)n Simple_repeat Simple_repeat 2 27 0 8 1248 830 112 34 20 chr11 87027445 87027591 -34816265 + URR1A DNA MER1_type 79 226 0 8 1248 21 36 0 0 chr11 87027619 87027647 -34816209 + AT_rich Low_complexity Low_complexity 1 28 0 9 1248 278 271 106 0 chr11 87027737 87027822 -34816034 + Kanga1 DNA Tc2 15 108 -1637 9 1248 477 217 155 0 chr11 87027952 87028081 -34815775 + B1F SINE Alu 1 149 0 9 1248 294 271 68 0 chr11 87028541 87028659 -34815197 - L1MD2 LINE L1 -6350 197 72 9 1248 339 25 0 0 chr11 87029072 87029112 -34814744 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1248 581 231 124 28 chr11 87029130 87029308 -34814548 + Lx9 LINE L1 6547 6741 -903 9 1248 481 290 83 0 chr11 87029323 87029516 -34814340 + L1MA5 LINE L1 6089 6297 -3 9 1248 214 270 0 0 chr11 87030396 87030459 -34813397 + T-rich Low_complexity Low_complexity 1 63 0 9 1248 339 44 0 0 chr11 87030522 87030567 -34813289 + (T)n Simple_repeat Simple_repeat 1 45 0 9 1248 186 26 0 95 chr11 87030564 87030606 -34813250 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 9 1248 587 230 56 0 chr11 87030700 87030826 -34813030 + B1_Mur3 SINE Alu 4 136 -13 1 1248 185 0 40 0 chr11 87030831 87030856 -34813000 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 1 1248 360 43 0 0 chr11 87030856 87030902 -34812954 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1248 409 330 106 75 chr11 87030906 87031188 -34812668 - B4 SINE B4 0 292 2 1 1249 239 268 18 0 chr11 87033244 87033300 -34810556 - ID4_ SINE ID -13 70 14 1 1249 261 211 16 66 chr11 87033588 87033649 -34810207 - RSINE1 SINE B4 0 165 108 1 1249 481 170 179 0 chr11 87033884 87033996 -34809860 - B1_Mur1 SINE Alu 0 149 18 1 1249 400 274 48 5 chr11 87034198 87034330 -34809526 - L1MD3 LINE L1 -14 7981 7866 1 1249 576 210 187 61 chr11 87034343 87034541 -34809315 - ID_B1 SINE B4 -1 223 1 1 1249 322 301 86 26 chr11 87034547 87034560 -34809296 - ID_B1 SINE B4 -20 204 82 1 1249 600 204 39 0 chr11 87034560 87034663 -34809193 - B1_Mur1 SINE Alu -42 107 1 1 1249 243 301 46 46 chr11 87034807 87034894 -34808962 - B1F1 SINE Alu -62 87 1 1 1249 450 127 0 0 chr11 87035048 87035119 -34808737 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1249 371 211 139 9 chr11 87035156 87035271 -34808585 - B1_Mm SINE Alu 0 147 18 1 1249 245 337 23 11 chr11 87035357 87035444 -34808412 - PB1 SINE Alu -8 119 32 1 1249 316 283 182 32 chr11 87035712 87035997 -34807859 - L1ME1 LINE L1 -125 6054 5727 1 1249 284 327 75 38 chr11 87036077 87036236 -34807620 + MER21B LTR ERV1 8 172 -691 1 1249 495 45 0 0 chr11 87036293 87036359 -34807497 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1249 241 236 219 45 chr11 87036444 87036599 -34807257 + MER77 LTR ERVL 425 606 -1 1 1249 249 291 117 71 chr11 87036599 87036730 -34807126 + MER21B LTR ERV1 569 708 -155 1 1249 576 287 124 30 chr11 87037113 87037476 -34806380 - L1MA4 LINE L1 -360 5940 5544 1 1249 321 290 160 0 chr11 87038358 87038458 -34805398 - PB1D10 SINE Alu -1 116 1 1 1249 436 289 55 55 chr11 87038535 87038718 -34805138 - B3A SINE B2 -15 183 1 1 1249 656 171 71 19 chr11 87039846 87040001 -34803855 - URR1B DNA MER1_type 0 225 63 1 1249 284 211 39 0 chr11 87040278 87040330 -34803526 + B1_Mur4 SINE Alu 7 60 -90 1 1249 21 0 0 0 chr11 87041053 87041074 -34802782 + AT_rich Low_complexity Low_complexity 1 21 0 1 1249 21 0 0 0 chr11 87043502 87043523 -34800333 + AT_rich Low_complexity Low_complexity 1 21 0 1 1249 878 203 194 17 chr11 87045884 87046064 -34797792 + B3 SINE B2 1 212 -4 1 1249 239 233 214 0 chr11 87046456 87046559 -34797297 + MIR SINE MIR 5 129 -133 1 1249 453 235 49 77 chr11 87046795 87046938 -34796918 - ID_B1 SINE B4 0 224 86 1 1249 180 226 35 86 chr11 87047140 87047198 -34796658 + L3 LINE CR1 33 87 -4402 1 1249 381 256 0 11 chr11 87047665 87047752 -34796104 - PB1D10 SINE Alu -27 90 5 1 1249 770 230 44 29 chr11 87047854 87048060 -34795796 - B3 SINE B2 -6 210 2 1 1249 180 250 33 0 chr11 87048328 87048388 -34795468 - MIRb SINE MIR -159 109 48 1 1249 187 335 92 73 chr11 87048488 87048749 -34795107 + L2 LINE L2 2327 2592 -827 1 1249 235 258 30 0 chr11 87049953 87050019 -34793837 + ID SINE ID 4 71 -153 1 1249 219 69 0 0 chr11 87050181 87050210 -34793646 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1249 527 188 24 46 chr11 87051220 87051348 -34792508 - B1_Mur1 SINE Alu 0 149 14 1 1249 245 223 133 41 chr11 87051269 87051367 -34792489 - MT2B LTR ERVL -344 257 151 1 1249 786 201 113 31 chr11 87051471 87051666 -34792190 + B3 SINE B2 2 212 -4 1 1249 493 289 40 7 chr11 87051692 87051842 -34792014 + RSINE1 SINE B4 8 162 -3 1 1249 411 21 0 0 chr11 87051845 87051893 -34791963 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1249 595 217 28 0 chr11 87052026 87052132 -34791724 - PB1D9 SINE Alu -10 110 2 1 1249 264 283 0 0 chr11 87052214 87052274 -34791582 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1249 183 162 0 0 chr11 87053806 87053843 -34790013 + G-rich Low_complexity Low_complexity 4 40 0 1 1249 198 0 0 0 chr11 87053984 87054006 -34789850 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 1 1249 415 159 250 0 chr11 87055818 87055906 -34787950 - PB1D10 SINE Alu -7 110 1 1 1249 21 0 0 0 chr11 87055907 87055928 -34787928 + AT_rich Low_complexity Low_complexity 1 21 0 1 1249 918 82 60 0 chr11 87055964 87056098 -34787758 - B1_Mus2 SINE Alu 0 147 6 1 1249 244 258 146 0 chr11 87056116 87056205 -34787651 - L1ME4a LINE L1 -198 5926 5825 1 1249 21 0 0 0 chr11 87056983 87057004 -34786852 + AT_rich Low_complexity Low_complexity 1 21 0 1 1249 186 43 0 0 chr11 87058551 87058574 -34785282 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1249 832 189 0 14 chr11 87058574 87058719 -34785137 - B1_Mus2 SINE Alu -3 144 2 1 1249 204 158 0 0 chr11 87058720 87058758 -34785098 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1249 364 289 32 88 chr11 87059359 87059484 -34784372 - PB1D7 SINE Alu -1 119 2 1 1249 404 211 48 0 chr11 87059501 87059605 -34784251 - PB1D7 SINE Alu -6 114 6 1 1249 450 188 24 0 chr11 87060236 87060321 -34783535 + B3A SINE B2 2 88 -110 1 1249 243 59 0 0 chr11 87060319 87060353 -34783503 - B1_Mus2 SINE Alu -95 52 19 1 1249 492 184 38 19 chr11 87061212 87061317 -34782539 + PB1D10 SINE Alu 2 108 -9 1 1249 338 286 21 21 chr11 87061365 87061458 -34782398 + ID_B1 SINE B4 4 96 -128 1 1249 315 206 68 10 chr11 87061536 87061639 -34782217 + PB1D10 SINE Alu 1 109 -8 1 1249 341 333 63 0 chr11 87062026 87062137 -34781719 - PB1 SINE Alu -9 118 1 1 1249 26 30 0 0 chr11 87062206 87062239 -34781617 + AT_rich Low_complexity Low_complexity 1 33 0 1 1249 761 289 131 40 chr11 87064078 87064406 -34779450 + MLT1G3 LTR MaLR 225 582 -13 1 1249 755 163 36 15 chr11 87064469 87064606 -34779250 + B1_Mur1 SINE Alu 1 140 -9 1 1249 225 0 0 0 chr11 87064622 87064647 -34779209 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1249 4716 52 5 3 chr11 87065019 87065602 -34778254 + L1_Mus2 LINE L1 5983 6566 0 1 1249 246 176 58 19 chr11 87065645 87065697 -34778159 + L1M5 LINE L1 5518 5571 -608 1 1249 807 195 120 6 chr11 87065853 87066028 -34777828 - B3 SINE B2 -21 195 1 1 1249 1210 54 0 0 chr11 87066106 87066253 -34777603 + B1_Mus2 SINE Alu 1 147 0 1 1249 227 296 12 0 chr11 87066288 87066369 -34777487 + L1MB8 LINE L1 5881 5962 -216 1 1249 291 114 0 0 chr11 87066562 87066606 -34777250 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 1 1249 476 299 66 0 chr11 87066888 87067055 -34776801 - B4A SINE B4 -74 218 41 1 1249 180 0 0 0 chr11 87067112 87067132 -34776724 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 1 1249 279 280 13 13 chr11 87067136 87067212 -34776644 - ID4 SINE ID -7 76 1 1 1249 228 111 0 0 chr11 87067243 87067279 -34776577 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1 1249 976 145 213 11 chr11 87067435 87067623 -34776233 + URR1A DNA MER1_type 1 226 0 1 1249 357 220 250 0 chr11 87067649 87067749 -34776107 - PB1 SINE Alu -2 125 1 1 1249 780 189 70 12 chr11 87068698 87068869 -34774987 + B3 SINE B2 2 182 -34 1 1249 396 59 0 0 chr11 87069042 87069093 -34774763 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1249 228 67 0 0 chr11 87069791 87069821 -34774035 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1 1249 510 46 0 0 chr11 87069835 87069900 -34773956 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1249 1081 101 13 0 chr11 87069900 87070058 -34773798 - B2_Mm2 SINE B2 -35 160 1 1 1249 727 193 7 21 chr11 87070128 87070142 -34773714 - B1_Mur1 SINE Alu 0 149 138 1 1249 1270 27 0 7 chr11 87070142 87070290 -34773566 - B1_Mus1 SINE Alu 0 148 2 1 1249 727 193 7 21 chr11 87070290 87070418 -34773438 - B1_Mur1 SINE Alu -12 137 9 1 1249 1545 58 16 0 chr11 87071373 87071562 -34772294 - B2_Mm2 SINE B2 -3 192 1 1 1249 711 191 7 35 chr11 87071582 87071723 -34772133 + B1_Mur1 SINE Alu 1 137 -12 1 1249 571 193 49 49 chr11 87071868 87072010 -34771846 - B1_Mur2 SINE Alu -2 147 6 1 1249 826 156 15 0 chr11 87074066 87074201 -34769655 - B1_Mur2 SINE Alu -11 138 2 1 1249 373 271 21 0 chr11 87074337 87074433 -34769423 - L1ME2z LINE L1 -184 6260 6163 1 1249 241 320 13 0 chr11 87074620 87074698 -34769158 + ID4 SINE ID 1 79 -4 1 1249 538 268 77 100 chr11 87074742 87075041 -34768815 + B4 SINE B4 1 292 0 1 1249 375 132 15 0 chr11 87075191 87075270 -34768586 - B2_Mm2 SINE B2 -87 129 47 1 1249 1196 92 28 17 chr11 87075337 87075513 -34768343 - B2_Mm1t SINE B2 -14 179 2 1 1249 477 202 213 6 chr11 87075892 87076066 -34767790 - B3 SINE B2 -6 210 1 1 1249 545 175 0 11 chr11 87076088 87076198 -34767658 - B1F2 SINE Alu -7 142 40 1 1249 453 247 0 3 chr11 87076199 87076550 -34767306 + CT-rich Low_complexity Low_complexity 1 349 0 1 1249 333 152 0 33 chr11 87076595 87076656 -34767200 - B1_Mur4 SINE Alu -90 60 2 1 1249 727 57 0 0 chr11 87076672 87076777 -34767079 - L1Md_T LINE L1 0 6582 6478 1 1249 285 302 52 0 chr11 87076996 87077092 -34766764 + MLT1C LTR MaLR 4 104 -363 1 1249 721 248 167 0 chr11 87077940 87078234 -34765622 + MT2A LTR ERVL 191 533 0 1 1249 370 300 91 26 chr11 87078734 87078888 -34764968 + RSINE1 SINE B4 2 165 0 2 1249 22 35 0 0 chr11 87079004 87079033 -34764823 + AT_rich Low_complexity Low_complexity 1 29 0 2 1249 1036 61 46 0 chr11 87079082 87079213 -34764643 - B1_Mm SINE Alu -9 138 2 2 1249 693 87 77 17 chr11 87079239 87079356 -34764500 - B1_Mus1 SINE Alu 0 150 27 2 1249 208 325 12 12 chr11 87079504 87079588 -34764268 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1249 285 314 44 47 chr11 87079636 87079910 -34763946 - B4A SINE B4 -18 274 2 2 1249 389 256 33 0 chr11 87080286 87080407 -34763449 + L1MA4 LINE L1 5805 5929 -371 2 1249 882 187 43 16 chr11 87080518 87080703 -34763153 + B3 SINE B2 1 190 -26 2 1249 275 259 0 0 chr11 87080761 87080815 -34763041 + ID4 SINE ID 5 58 -25 2 1249 315 0 0 0 chr11 87080815 87080850 -34763006 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1249 354 45 0 0 chr11 87080850 87080893 -34762963 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1249 246 250 105 23 chr11 87080893 87080924 -34762932 + BC1_Mm scRNA scRNA 59 97 -55 2 1249 1305 92 38 0 chr11 87081404 87081588 -34762268 + B2_Mm2 SINE B2 1 191 -4 2 1249 255 103 0 0 chr11 87081783 87081822 -34762034 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1249 1171 62 7 0 chr11 87081825 87081971 -34761885 - B1_Mm SINE Alu 0 147 1 2 1249 243 0 0 0 chr11 87081987 87082014 -34761842 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1249 685 223 30 112 chr11 87082045 87082085 -34761771 + B3A SINE B2 2 35 -163 2 1249 2672 32 0 0 chr11 87082085 87082397 -34761459 + L1Md_A LINE L1 6271 6582 0 2 1249 685 223 30 112 chr11 87082397 87082553 -34761303 + B3A SINE B2 36 182 -16 2 1249 357 239 0 0 chr11 87082783 87082854 -34761002 - ID4 SINE ID -11 72 2 2 1249 207 0 0 0 chr11 87083205 87083228 -34760628 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 2 1249 516 146 0 11 chr11 87083228 87083318 -34760538 - B1_Mus2 SINE Alu -14 133 45 2 1249 571 161 80 0 chr11 87083388 87083500 -34760356 - ID_B1 SINE B4 -12 212 92 2 1249 1199 42 0 7 chr11 87083556 87083700 -34760156 - B1_Mus1 SINE Alu -1 147 5 2 1249 351 0 0 0 chr11 87084492 87084531 -34759325 + (TCC)n Simple_repeat Simple_repeat 2 40 0 2 1249 331 245 149 63 chr11 87085060 87085097 -34758759 - B2_Mm2 SINE B2 -6 189 158 2 1249 282 56 0 0 chr11 87085097 87085133 -34758723 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1249 353 245 149 63 chr11 87085133 87085269 -34758587 - B3A SINE B2 -38 157 1 2 1249 1048 110 134 0 chr11 87085333 87085497 -34758359 + B2_Mm2 SINE B2 2 187 -8 2 1249 702 176 46 0 chr11 87085878 87086009 -34757847 - B1_Mus1 SINE Alu 0 148 12 2 1249 1196 62 0 0 chr11 87086011 87086157 -34757699 + B1_Mus1 SINE Alu 3 148 0 2 1249 345 208 0 0 chr11 87086894 87086966 -34756890 - L1MD3 LINE L1 -493 7502 7431 2 1249 288 364 22 17 chr11 87087032 87087211 -34756645 + L1MC3 LINE L1 7316 7495 -290 2 1249 1094 78 7 0 chr11 87087386 87087527 -34756329 + B1_Mus1 SINE Alu 1 142 -6 2 1249 530 269 110 44 chr11 87087906 87088315 -34755541 - L1_Mur3 LINE L1 -1892 4248 3785 2 1249 316 89 0 0 chr11 87088341 87088386 -34755470 + B1_Mur4 SINE Alu 1 45 -105 2 1249 1258 41 0 0 chr11 87088714 87088861 -34754995 + B1_Mus1 SINE Alu 2 148 0 2 1249 1999 272 115 7 chr11 87088889 87089619 -34754237 + Tigger1 DNA MER2_type 68 876 -1542 2 1249 360 0 0 0 chr11 87089692 87089732 -34754124 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1249 260 167 0 0 chr11 87089741 87089789 -34754067 + Tigger1 DNA MER2_type 889 936 -1482 2 1249 309 232 161 0 chr11 87090546 87090658 -34753198 + Tigger1 DNA MER2_type 931 1060 -1358 2 1249 364 271 115 0 chr11 87090685 87090807 -34753049 + Tigger1 DNA MER2_type 1119 1254 -1164 2 1249 520 240 79 13 chr11 87090824 87091052 -34752804 + L1MCa LINE L1 2140 2382 -4126 2 1249 252 221 66 104 chr11 87091134 87091240 -34752616 - MT2B2 LTR ERVL -292 292 191 2 1249 545 209 0 0 chr11 87091146 87091254 -34752602 - B1F SINE Alu -29 120 13 2 1249 436 281 0 24 chr11 87091254 87091270 -34752586 - ID_B1 SINE B4 -26 198 78 2 1249 327 319 0 32 chr11 87091356 87091479 -34752377 + PB1 SINE Alu 2 120 -7 2 1249 203 143 0 45 chr11 87091481 87091525 -34752331 + A-rich Low_complexity Low_complexity 4 45 0 2 1249 269 182 18 0 chr11 87092031 87092086 -34751770 + L1MC1 LINE L1 6265 6320 -13 2 1249 1291 54 54 0 chr11 87093242 87093410 -34750446 + B2_Mm2 SINE B2 2 178 -17 2 1249 915 130 0 0 chr11 87093410 87093556 -34750300 + (GGA)n Simple_repeat Simple_repeat 2 147 0 2 1249 194 223 0 17 chr11 87093578 87093633 -34750223 + MIR SINE MIR 75 130 -138 2 1249 378 61 0 0 chr11 87094701 87094750 -34749106 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1249 240 207 86 0 chr11 87095026 87095084 -34748772 + ID2 SINE ID 2 64 -19 2 1249 32 43 0 0 chr11 87095321 87095367 -34748489 + AT_rich Low_complexity Low_complexity 1 46 0 2 1249 314 172 125 0 chr11 87095367 87095431 -34748425 - B3 SINE B2 -118 98 27 2 1249 600 297 120 48 chr11 87095599 87095957 -34747899 + MLT1F2 LTR MaLR 120 510 -50 2 1249 240 35 0 0 chr11 87095957 87095986 -34747870 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1249 483 204 19 28 chr11 87095986 87096092 -34747764 - PB1D10 SINE Alu -11 106 2 2 1249 591 254 112 88 chr11 87096369 87096472 -34747384 + Lx6 LINE L1 7160 7258 -202 2 1249 186 43 0 0 chr11 87096472 87096495 -34747361 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1249 591 254 112 88 chr11 87096495 87096685 -34747171 + Lx6 LINE L1 7259 7460 0 2 1249 245 197 16 0 chr11 87096706 87096767 -34747089 + GA-rich Low_complexity Low_complexity 3 64 0 2 1249 494 135 89 59 chr11 87096770 87096919 -34746937 + MTC LTR MaLR 203 364 -57 2 1249 219 365 62 16 chr11 87097795 87097808 -34746048 + ID_B1 SINE B4 70 129 -95 2 1249 254 337 29 10 chr11 87097808 87097910 -34745946 + PB1D10 SINE Alu 1 104 -13 2 1249 219 365 62 16 chr11 87097910 87097923 -34745933 + ID_B1 SINE B4 130 203 -21 2 1249 240 277 15 0 chr11 87098041 87098106 -34745750 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 2 1249 1141 88 0 0 chr11 87098451 87098598 -34745258 + B1_Mus1 SINE Alu 2 148 0 2 1249 2034 297 72 124 chr11 87098609 87098773 -34745083 + L1M2 LINE L1 2426 2608 -3535 2 1249 264 122 0 0 chr11 87098773 87098814 -34745042 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1249 2034 297 72 124 chr11 87098814 87099606 -34744250 + L1M2 LINE L1 2609 3333 -2810 2 1249 4596 118 48 11 chr11 87099606 87100335 -34743521 - RMER6A LTR ERVK 0 756 1 2 1249 2034 297 72 124 chr11 87100335 87100880 -34742976 + L1M2 LINE L1 3334 3863 -2280 2 1249 1286 34 0 0 chr11 87100880 87101027 -34742829 + B1_Mus2 SINE Alu 1 147 0 2 1249 2034 297 72 124 chr11 87101027 87102023 -34741833 + L1M2 LINE L1 3864 4795 -1348 2 1249 207 0 0 0 chr11 87102023 87102046 -34741810 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1249 2034 297 72 124 chr11 87102046 87102228 -34741628 + L1M2 LINE L1 4796 4969 -1174 2 1249 2369 295 118 54 chr11 87102233 87103228 -34740628 - MTE-int LTR MaLR -187 1393 353 2 1249 342 259 35 53 chr11 87103228 87103342 -34740514 - PB1D10 SINE Alu -5 112 1 2 1249 2369 295 118 54 chr11 87103342 87103622 -34740234 - MTE-int LTR MaLR -1228 352 37 2 1249 1075 142 142 0 chr11 87103633 87103851 -34740005 + ORR1A1 LTR MaLR 90 338 -8 2 1249 284 202 236 0 chr11 87104131 87104220 -34739636 - PB1D9 SINE Alu -8 112 3 2 1249 302 222 28 0 chr11 87104155 87104231 -34739625 - ID_B1 SINE B4 -139 153 72 2 1249 685 276 101 22 chr11 87104497 87104775 -34739081 + RMER5 LTR ERV1 57 356 -178 2 1249 697 189 0 23 chr11 87104788 87104918 -34738938 + B1_Mur1 SINE Alu 13 139 -10 2 1249 392 207 114 143 chr11 87104957 87105003 -34738853 + RMER5 LTR ERV1 350 396 -138 2 1249 1180 62 0 0 chr11 87105003 87105147 -34738709 + B1_Mm SINE Alu 2 145 -2 2 1249 392 207 114 143 chr11 87105147 87105275 -34738581 + RMER5 LTR ERV1 397 519 -15 2 1249 329 145 0 42 chr11 87106397 87106469 -34737387 + (TGAG)n Simple_repeat Simple_repeat 2 70 0 2 1249 237 179 0 0 chr11 87106553 87106592 -34737264 - tRNA-Ala-GCG tRNA tRNA -3 72 34 2 1249 757 163 0 11 chr11 87106754 87106934 -34736922 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1249 763 178 0 7 chr11 87106964 87107407 -34736449 + (TG)n Simple_repeat Simple_repeat 1 439 0 2 1249 363 125 0 0 chr11 87107433 87107505 -34736351 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1249 608 230 86 0 chr11 87107917 87108056 -34735800 + B3A SINE B2 1 151 -47 2 1249 333 0 0 0 chr11 87108064 87108101 -34735755 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1249 767 174 21 28 chr11 87108154 87108296 -34735560 + B1_Mur4 SINE Alu 2 142 -8 2 1249 1226 47 0 0 chr11 87108389 87108537 -34735319 + B1_Mus1 SINE Alu 1 148 0 2 1249 192 77 0 0 chr11 87108550 87108576 -34735280 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1249 296 307 28 55 chr11 87108868 87109013 -34734843 + MER34A1 LTR ERV1 275 415 -172 2 1249 303 330 65 148 chr11 87109086 87109410 -34734446 - ORR1E LTR MaLR -57 302 6 2 1249 2309 254 68 64 chr11 87109396 87109759 -34734097 - MTE-int LTR MaLR -34 1546 1176 2 1249 1460 189 161 0 chr11 87109759 87110081 -34733775 - ORR1D1 LTR MaLR 0 374 1 2 1249 2309 254 68 64 chr11 87110081 87110453 -34733403 - MTE-int LTR MaLR -405 1175 808 2 1249 360 274 52 13 chr11 87110533 87110688 -34733168 + MTD LTR MaLR 1 161 -258 2 1249 267 31 0 0 chr11 87111185 87111217 -34732639 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1249 189 121 0 0 chr11 87111243 87111276 -34732580 + (CATA)n Simple_repeat Simple_repeat 4 36 0 2 1249 216 0 0 0 chr11 87111281 87111305 -34732551 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1249 1153 52 0 0 chr11 87111485 87111621 -34732235 + B1_Mus1 SINE Alu 3 138 -10 2 1249 243 0 0 0 chr11 87111622 87111649 -34732207 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1249 556 234 53 47 chr11 87113252 87113398 -34730458 + B3A SINE B2 22 168 -30 2 1249 213 39 0 0 chr11 87113398 87113424 -34730432 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2 1249 556 234 53 47 chr11 87113424 87113447 -34730409 + B3A SINE B2 169 192 -6 2 1249 5695 104 23 18 chr11 87113629 87114463 -34729393 + Lx3A LINE L1 6138 6975 -6 2 1249 37 0 0 0 chr11 87114463 87114500 -34729356 + AT_rich Low_complexity Low_complexity 1 37 0 2 1249 864 280 132 37 chr11 87114503 87115198 -34728658 + HAL1 LINE L1 1454 2214 -293 2 1249 641 234 76 0 chr11 87115396 87115541 -34728315 + B3A SINE B2 2 157 -41 2 1249 406 194 224 0 chr11 87115592 87115690 -34728166 + B3A SINE B2 2 121 -77 2 1249 209 167 0 40 chr11 87115757 87115807 -34728049 + (CCCA)n Simple_repeat Simple_repeat 3 50 0 3 1249 815 218 19 62 chr11 87115834 87116024 -34727832 - B3 SINE B2 -10 206 21 3 1249 1207 167 8 63 chr11 87116024 87116261 -34727595 - URR1B DNA MER1_type 0 225 2 3 1249 815 218 19 62 chr11 87116261 87116280 -34727576 - B3 SINE B2 -196 20 6 3 1249 304 256 38 13 chr11 87116586 87116665 -34727191 + ID2 SINE ID 1 81 -2 3 1249 27 0 0 0 chr11 87116819 87116846 -34727010 + AT_rich Low_complexity Low_complexity 1 27 0 3 1249 866 209 52 0 chr11 87117342 87117533 -34726323 - B3 SINE B2 -3 213 13 3 1249 750 232 11 34 chr11 87117544 87117722 -34726134 - B3A SINE B2 -24 174 1 3 1249 772 265 57 0 chr11 87118565 87118776 -34725080 + ID_B1 SINE B4 1 223 -1 3 1249 903 178 0 0 chr11 87118922 87119068 -34724788 - B1_Mur3 SINE Alu -2 147 2 3 1249 426 274 169 7 chr11 87119109 87119263 -34724593 + B3A SINE B2 5 183 -15 3 1249 324 0 0 0 chr11 87119743 87119779 -34724077 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 3 1249 802 159 15 0 chr11 87119779 87119911 -34723945 - B1_Mus1 SINE Alu -12 136 3 3 1249 232 178 130 52 chr11 87119965 87120042 -34723814 + B1F2 SINE Alu 46 128 -21 3 1249 3159 97 42 4 chr11 87120444 87120901 -34722955 - Lx4A LINE L1 -944 6114 5641 3 1249 6039 130 22 9 chr11 87120901 87121829 -34722027 + Lx4A LINE L1 6119 7058 0 3 1249 1231 184 5 10 chr11 87121838 87122046 -34721810 - B3 SINE B2 -9 207 1 3 1249 551 15 15 0 chr11 87122844 87122912 -34720944 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1249 592 250 161 0 chr11 87124073 87124265 -34719591 - ID_B1 SINE B4 -1 223 1 3 1249 24 0 0 0 chr11 87124270 87124294 -34719562 + AT_rich Low_complexity Low_complexity 1 24 0 3 1249 919 89 0 0 chr11 87124303 87124426 -34719430 + B2_Mm2 SINE B2 3 125 -70 3 1249 271 265 35 64 chr11 87124894 87125035 -34718821 - Tigger7 DNA MER2_type -47 2444 2308 3 1249 555 240 62 0 chr11 87125036 87125165 -34718691 + B1_Mur1 SINE Alu 2 138 -11 3 1249 274 194 14 27 chr11 87125204 87125278 -34718578 - Tigger7 DNA MER2_type -2022 469 397 3 1249 255 343 277 10 chr11 87125276 87125482 -34718374 - Tigger7 DNA MER2_type -2221 270 10 3 1249 284 352 55 0 chr11 87125493 87125621 -34718235 - MIRb SINE MIR -120 148 14 3 1249 224 361 0 0 chr11 87126611 87126694 -34717162 + CT-rich Low_complexity Low_complexity 2 84 0 3 1249 395 237 31 10 chr11 87126717 87126815 -34717041 - PB1D10 SINE Alu -13 104 5 3 1249 361 259 116 0 chr11 87126949 87127061 -34716795 + RSINE1 SINE B4 3 127 -38 3 1249 300 271 0 123 chr11 87127409 87127448 -34716408 + MT2B LTR ERVL 133 239 -362 3 1249 504 157 0 0 chr11 87127448 87127531 -34716325 + B1_Mus1 SINE Alu 1 83 -65 3 1249 357 230 0 13 chr11 87127563 87127638 -34716218 + B1F SINE Alu 1 74 -75 3 1249 239 185 37 0 chr11 87127657 87127711 -34716145 + GA-rich Low_complexity Low_complexity 5 60 0 3 1249 456 204 108 27 chr11 87127980 87128091 -34715765 + B1_Mur1 SINE Alu 3 122 -27 3 1249 8060 55 14 1 chr11 87128234 87129292 -34714564 + L1_Mus1 LINE L1 5487 6654 0 3 1249 308 143 18 0 chr11 87129299 87129355 -34714501 + RSINE1 SINE B4 2 58 -107 3 1249 1029 129 0 0 chr11 87129908 87130055 -34713801 + B1_Mus1 SINE Alu 2 148 0 3 1249 235 161 0 31 chr11 87130574 87130642 -34713214 + PB1D10 SINE Alu 60 120 -7 3 1249 365 274 39 10 chr11 87131257 87131360 -34712496 - PB1 SINE Alu -2 125 20 3 1249 587 152 19 9 chr11 87132195 87132301 -34711555 - U6 snRNA snRNA 0 107 1 3 1249 607 230 0 67 chr11 87132354 87132503 -34711353 - ID_B1 SINE B4 0 224 86 3 1249 360 154 15 15 chr11 87133282 87133348 -34710508 - MTC LTR MaLR -3 418 353 3 1249 734 152 42 28 chr11 87133680 87133822 -34710034 + B1_Mur3 SINE Alu 1 144 -5 3 1249 180 0 0 0 chr11 87133905 87133925 -34709931 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1249 300 200 71 48 chr11 87134288 87134372 -34709484 - PB1D10 SINE Alu -1 116 31 3 1249 972 56 35 0 chr11 87134444 87134587 -34709269 + URR1A DNA MER1_type 79 226 0 3 1249 1912 173 91 8 chr11 87134597 87134981 -34708875 - MTC LTR MaLR 0 421 6 3 1249 980 72 65 0 chr11 87134986 87135124 -34708732 + B1_Mm SINE Alu 1 147 0 3 1249 424 281 27 67 chr11 87135648 87135797 -34708059 + B1F SINE Alu 6 148 -1 3 1249 283 300 75 42 chr11 87136898 87137118 -34706738 - MIR3 SINE MIR -23 245 2 3 1249 197 211 18 0 chr11 87137616 87137673 -34706183 + GA-rich Low_complexity Low_complexity 4 61 0 3 1249 1006 121 98 6 chr11 87137691 87137865 -34705991 - B2_Mm2 SINE B2 -5 190 1 3 1249 3227 177 9 43 chr11 87137896 87138541 -34705315 + Lx2B LINE L1 6374 6996 -4 3 1249 1335 61 16 16 chr11 87138552 87138709 -34705147 + B2_Mm2 SINE B2 4 159 -36 3 1249 222 37 0 0 chr11 87138709 87138736 -34705120 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1249 1335 61 16 16 chr11 87138736 87138761 -34705095 + B2_Mm2 SINE B2 160 186 -9 3 1249 395 309 157 7 chr11 87138993 87139146 -34704710 - B3A SINE B2 -22 176 1 3 1249 368 243 126 0 chr11 87139249 87139352 -34704504 + PB1D10 SINE Alu 2 117 0 3 1249 1000 61 61 0 chr11 87139429 87139560 -34704296 + B1_Mur4 SINE Alu 2 140 -10 3 1249 262 0 26 26 chr11 87139560 87139599 -34704257 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1249 192 77 0 0 chr11 87139600 87139626 -34704230 + (GAA)n Simple_repeat Simple_repeat 2 27 0 3 1249 322 267 13 0 chr11 87139932 87140007 -34703849 + ID4_ SINE ID 5 80 -3 3 1249 240 298 44 0 chr11 87140111 87140225 -34703631 + PB1 SINE Alu 1 119 -8 3 1249 587 141 8 64 chr11 87140438 87140565 -34703291 - B1_Mur4 SINE Alu 0 150 33 3 1249 853 258 76 30 chr11 87140674 87140938 -34702918 + B4A SINE B4 2 277 -15 3 1249 254 29 29 0 chr11 87140996 87141031 -34702825 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1249 186 43 0 0 chr11 87141393 87141416 -34702440 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1249 1474 196 171 55 chr11 87141514 87142059 -34701797 + L1MA7 LINE L1 5261 5868 -423 3 1249 434 270 66 0 chr11 87142082 87142234 -34701622 + MER2 DNA MER2_type 90 251 -94 3 1249 370 185 173 18 chr11 87142249 87142359 -34701497 - RSINE1 SINE B4 -36 129 3 3 1249 362 290 32 0 chr11 87142365 87142458 -34701398 + MER2 DNA MER2_type 242 337 -8 3 1249 473 277 65 39 chr11 87142594 87142748 -34701108 + RSINE1 SINE B4 8 165 0 3 1249 421 286 44 15 chr11 87142882 87143017 -34700839 + ID_B1 SINE B4 26 164 -60 3 1249 246 215 68 86 chr11 87143124 87143287 -34700569 + L1MC LINE L1 3113 3272 -2874 3 1249 799 205 18 34 chr11 87143320 87143525 -34700331 + ORR1D1 LTR MaLR 2 213 -146 3 1249 218 129 0 0 chr11 87143498 87143529 -34700327 - B1F1 SINE Alu -113 36 6 3 1249 325 280 13 0 chr11 87143535 87143610 -34700246 - ID4_ SINE ID -6 77 2 3 1249 189 94 0 0 chr11 87143624 87143656 -34700200 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 3 1249 1147 74 0 13 chr11 87143659 87143809 -34700047 - B1_Mus1 SINE Alu 0 148 1 3 1249 460 191 133 0 chr11 87143973 87144078 -34699778 + B3A SINE B2 1 119 -79 3 1249 382 211 37 46 chr11 87144116 87144225 -34699631 - RMER15 LTR ERVL -63 512 405 3 1249 301 200 21 105 chr11 87144556 87144651 -34699205 + B3A SINE B2 106 192 -6 3 1249 970 201 40 5 chr11 87144658 87144858 -34698998 + B3 SINE B2 1 207 -9 3 1249 259 220 88 0 chr11 87144864 87144955 -34698901 + L1M4 LINE L1 3723 3821 -2325 3 1249 301 267 13 0 chr11 87144980 87145055 -34698801 - ID4_ SINE ID 0 83 8 3 1249 229 309 43 7 chr11 87145067 87145207 -34698649 + L1M4 LINE L1 3858 4002 -2144 3 1249 737 168 61 0 chr11 87145961 87146092 -34697764 - B1_Mur1 SINE Alu -8 141 3 3 1249 22 35 0 0 chr11 87146143 87146172 -34697684 + AT_rich Low_complexity Low_complexity 1 29 0 3 1249 765 189 132 26 chr11 87146174 87146364 -34697492 - B3 SINE B2 -6 210 1 3 1249 288 111 0 0 chr11 87146606 87146651 -34697205 - B1F SINE Alu -1 148 104 3 1249 631 282 18 58 chr11 87146874 87147100 -34696756 - ID_B1 SINE B4 -7 217 1 3 1249 761 150 55 0 chr11 87147134 87147261 -34696595 + B1_Mus1 SINE Alu 1 134 -14 3 1249 184 233 113 32 chr11 87147265 87147327 -34696529 + MIRc SINE MIR 72 138 -130 3 1249 26 0 0 0 chr11 87147836 87147862 -34695994 + AT_rich Low_complexity Low_complexity 1 26 0 3 1249 561 240 179 16 chr11 87147897 87148143 -34695713 + L1M4 LINE L1 4869 5154 -992 3 1249 258 261 307 8 chr11 87148344 87148464 -34695392 + RSINE1 SINE B4 9 164 -1 3 1249 528 186 81 41 chr11 87148584 87148707 -34695149 - B3A SINE B2 -70 128 1 3 1249 1418 40 6 33 chr11 87148722 87148905 -34694951 - B2_Mm2 SINE B2 -14 181 4 3 1249 1176 48 7 0 chr11 87148932 87149078 -34694778 - B1_Mus2 SINE Alu 0 147 1 3 1249 298 310 34 8 chr11 87149102 87149219 -34694637 - PB1D7 SINE Alu 0 120 1 3 1249 258 273 78 22 chr11 87149730 87149820 -34694036 - B4 SINE B4 -72 220 126 3 1249 486 154 0 0 chr11 87149742 87149820 -34694036 - B1_Mur4 SINE Alu -31 119 42 3 1249 248 208 48 159 chr11 87149820 87149866 -34693990 - RLTR25B LTR ERVK -514 512 403 3 1249 262 237 0 17 chr11 87149878 87149896 -34693960 - ID_B1 SINE B4 -126 166 86 3 1249 240 229 0 32 chr11 87149896 87149959 -34693897 - B1F2 SINE Alu -84 65 5 3 1249 395 252 13 71 chr11 87150191 87150345 -34693511 + ORR1D2 LTR MaLR 171 315 -55 3 1249 498 180 53 18 chr11 87150446 87150559 -34693297 + B1F1 SINE Alu 31 147 -2 3 1249 646 194 204 6 chr11 87150625 87150801 -34693055 - B3 SINE B2 0 216 6 3 1249 450 327 32 13 chr11 87150947 87151105 -34692751 + RSINE1 SINE B4 1 161 -4 3 1249 360 245 9 97 chr11 87151523 87151636 -34692220 + PB1D10 SINE Alu 1 103 -14 4 1249 3318 211 43 66 chr11 87151859 87152253 -34691603 + RCHARR1 DNA MER1_type 5 370 -604 4 1249 790 168 157 66 chr11 87152253 87152451 -34691405 + B3 SINE B2 1 216 0 4 1249 3318 211 43 66 chr11 87152451 87152980 -34690876 + RCHARR1 DNA MER1_type 371 907 -67 4 1249 837 168 62 0 chr11 87152998 87153159 -34690697 - MTD LTR MaLR -14 405 235 4 1249 760 192 12 25 chr11 87153174 87153334 -34690522 - B3 SINE B2 -55 161 4 4 1249 242 329 14 0 chr11 87153422 87153492 -34690364 + ID4_ SINE ID 1 71 -12 4 1249 453 103 0 0 chr11 87153933 87154001 -34689855 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1249 188 352 86 0 chr11 87154157 87154262 -34689594 + MIRc SINE MIR 66 179 -89 4 1249 22 35 0 0 chr11 87154506 87154535 -34689321 + AT_rich Low_complexity Low_complexity 1 29 0 4 1249 390 91 0 0 chr11 87155023 87155078 -34688778 + (TCC)n Simple_repeat Simple_repeat 2 56 0 4 1249 219 277 31 0 chr11 87155085 87155150 -34688706 - ID SINE ID -156 68 2 4 1249 25 19 0 37 chr11 87155560 87155581 -34688275 + AT_rich Low_complexity Low_complexity 1 21 0 4 1249 1223 181 0 61 chr11 87155581 87155811 -34688045 + B3 SINE B2 1 216 0 4 1249 25 19 0 37 chr11 87155811 87155826 -34688030 + AT_rich Low_complexity Low_complexity 1 15 0 4 1249 968 138 14 0 chr11 87155826 87155971 -34687885 + B1_Mur1 SINE Alu 3 149 0 4 1249 25 19 0 37 chr11 87155971 87155987 -34687869 + AT_rich Low_complexity Low_complexity 1 16 0 4 1249 381 240 148 44 chr11 87156078 87156213 -34687643 + B4A SINE B4 8 156 -136 4 1249 243 210 113 0 chr11 87156205 87156267 -34687589 + ZP3AR Satellite Satellite 14 82 -130 4 1249 862 57 0 41 chr11 87156227 87156373 -34687483 + BC1_Mm scRNA scRNA 1 140 -12 4 1249 635 327 61 14 chr11 87156373 87156506 -34687350 + B4A SINE B4 1 292 0 4 1249 22 35 0 0 chr11 87156611 87156640 -34687216 + AT_rich Low_complexity Low_complexity 1 29 0 4 1249 561 181 0 191 chr11 87156950 87157107 -34686749 - B3 SINE B2 -88 128 2 4 1249 403 248 19 9 chr11 87157383 87157489 -34686367 + PB1D9 SINE Alu 1 107 -13 4 1249 306 300 30 10 chr11 87157578 87157679 -34686177 + B4A SINE B4 2 104 -188 4 1249 237 274 0 0 chr11 87157778 87157829 -34686027 + (CACG)n Simple_repeat Simple_repeat 4 54 0 4 1249 660 281 43 10 chr11 87158451 87158659 -34685197 + ID_B1 SINE B4 2 216 -8 4 1249 771 247 11 32 chr11 87158689 87158877 -34684979 + ID_B1 SINE B4 3 186 -38 4 1249 834 106 0 0 chr11 87158893 87159016 -34684840 - B1_Mus2 SINE Alu 0 147 25 4 1249 560 273 20 7 chr11 87159053 87159204 -34684652 + RSINE1 SINE B4 13 165 0 4 1249 306 286 143 30 chr11 87159929 87160160 -34683696 + MER33 DNA MER1_type 1 257 -67 4 1249 531 252 45 8 chr11 87160158 87160291 -34683565 - B1F1 SINE Alu 0 149 13 4 1249 290 246 22 67 chr11 87160379 87160484 -34683372 + BC1_Mm scRNA scRNA 1 102 -50 4 1249 1124 63 0 0 chr11 87160484 87160626 -34683230 + B1_Mus1 SINE Alu 2 143 -5 4 1249 290 246 22 67 chr11 87160626 87160655 -34683201 + BC1_Mm scRNA scRNA 103 129 -23 4 1249 1225 55 0 0 chr11 87160842 87160988 -34682868 + B1_Mm SINE Alu 1 146 -1 4 1249 213 39 0 0 chr11 87160990 87161016 -34682840 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1249 217 242 192 0 chr11 87161039 87161138 -34682718 + B3 SINE B2 67 184 -32 4 1249 398 291 123 64 chr11 87161487 87161707 -34682149 + MLT1J1 LTR MaLR 63 295 -149 4 1249 1181 43 0 0 chr11 87162114 87162254 -34681602 - B1_Mm SINE Alu -7 140 1 4 1249 484 205 12 0 chr11 87162255 87162338 -34681518 - B1F SINE Alu -65 84 1 4 156 768 182 72 7 chr11 87162808 87162946 -34680910 - B1_Mur2 SINE Alu 0 149 3 4 1250 23 0 0 0 chr11 87163145 87163168 -34680688 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 431 279 68 25 chr11 87163199 87163340 -34680516 + ORR1E-int LTR MaLR 1383 1530 -50 4 1250 313 287 124 71 chr11 87163340 87163509 -34680347 + ORR1E LTR MaLR 4 181 -178 4 1250 587 299 190 0 chr11 87163689 87163957 -34679899 + MTEa LTR MaLR 61 379 0 4 1250 362 217 24 24 chr11 87163957 87164041 -34679815 - PB1D10 SINE Alu -16 101 18 4 1250 253 284 12 0 chr11 87164042 87164123 -34679733 - ID4 SINE ID 0 83 2 4 1250 561 192 19 0 chr11 87164157 87164261 -34679595 - PB1D9 SINE Alu -9 111 6 4 1250 283 276 22 54 chr11 87164184 87164276 -34679580 - B4 SINE B4 -123 169 81 4 1250 1509 72 0 5 chr11 87164281 87164476 -34679380 - B2_Mm2 SINE B2 0 195 2 4 1250 871 124 47 0 chr11 87164498 87164627 -34679229 - B1_Mus1 SINE Alu -12 136 2 4 1250 707 100 36 9 chr11 87164762 87164873 -34678983 + B1_Mus1 SINE Alu 6 119 -29 4 1250 266 0 29 0 chr11 87164878 87164912 -34678944 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 1250 789 47 0 0 chr11 87164984 87165090 -34678766 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1250 306 302 64 51 chr11 87165107 87165264 -34678592 - B3A SINE B2 -39 159 1 4 1250 386 319 77 0 chr11 87165264 87165422 -34678434 - Charlie7 DNA MER1_type -2190 422 252 4 1250 321 305 0 0 chr11 87165506 87165588 -34678268 - ID4 SINE ID -1 82 1 4 1250 346 239 35 11 chr11 87165618 87165722 -34678134 - PB1D7 SINE Alu -41 108 1 4 1250 652 36 0 0 chr11 87166023 87166106 -34677750 - L1Md_A LINE L1 0 6582 6500 4 1250 686 151 33 22 chr11 87166866 87167053 -34676803 + B3 SINE B2 1 194 -1 4 1250 664 233 14 0 chr11 87168367 87168513 -34675343 + B1_Mur2 SINE Alu 1 148 -1 4 1250 1001 153 0 0 chr11 87168517 87168667 -34675189 + B1_Mur4 SINE Alu 1 150 0 4 1250 512 301 10 65 chr11 87168721 87168920 -34674936 - B3A SINE B2 0 198 11 4 1250 679 182 42 7 chr11 87168991 87169135 -34674721 - B1_Mur4 SINE Alu 0 150 2 4 1250 281 258 97 0 chr11 87169295 87169357 -34674499 + ID4_ SINE ID 2 69 -14 4 1250 544 250 41 14 chr11 87169496 87169642 -34674214 + B3A SINE B2 27 176 -22 4 1250 243 0 0 0 chr11 87169870 87169897 -34673959 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1250 1250 27 0 0 chr11 87169900 87170047 -34673809 - B1_Mus2 SINE Alu 0 147 1 4 1250 26 64 0 0 chr11 87171824 87171871 -34671985 + GC_rich Low_complexity Low_complexity 1 47 0 4 1250 260 241 0 0 chr11 87172018 87172076 -34671780 + (CGG)n Simple_repeat Simple_repeat 1 58 0 4 1250 195 189 0 0 chr11 87172103 87172156 -34671700 + CT-rich Low_complexity Low_complexity 2 54 0 4 1250 267 157 0 0 chr11 87172268 87172319 -34671537 + (TTCGGG)n Simple_repeat Simple_repeat 3 53 0 4 1250 24 32 0 0 chr11 87172587 87172618 -34671238 + GC_rich Low_complexity Low_complexity 1 31 0 4 1250 309 290 180 17 chr11 87173252 87173424 -34670432 - MIRc SINE MIR -19 249 50 4 1250 500 234 65 0 chr11 87174256 87174380 -34669476 + B1_Mur1 SINE Alu 1 132 -17 4 1250 414 0 0 0 chr11 87174380 87174426 -34669430 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 1250 1145 49 7 14 chr11 87175316 87175460 -34668396 - B1_Mus2 SINE Alu 0 147 5 4 1250 492 226 142 71 chr11 87175551 87175773 -34668083 + L1ME2 LINE L1 5593 5829 -355 4 1250 1366 76 32 0 chr11 87175773 87175958 -34667898 + B2_Mm1a SINE B2 1 191 -2 4 1250 547 260 7 40 chr11 87176003 87176141 -34667715 + B1_Mus1 SINE Alu 2 136 -12 4 1250 459 0 0 0 chr11 87176141 87176192 -34667664 + (GAAA)n Simple_repeat Simple_repeat 4 54 0 4 1250 547 260 7 40 chr11 87176192 87176205 -34667651 + B1_Mus1 SINE Alu 137 148 0 4 1250 182 105 26 0 chr11 87176205 87176243 -34667613 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 4 1250 449 34 17 0 chr11 87176329 87176388 -34667468 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 4 1250 292 143 14 14 chr11 87176396 87176467 -34667389 + G-rich Low_complexity Low_complexity 1 71 0 4 1250 644 93 10 0 chr11 87176464 87176561 -34667295 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1250 225 312 30 50 chr11 87176561 87176662 -34667194 + ID_B1 SINE B4 121 219 -5 4 1250 277 162 34 101 chr11 87176583 87176672 -34667184 + B1F SINE Alu 67 149 0 4 1250 650 231 141 31 chr11 87176731 87176923 -34666933 + B3 SINE B2 2 214 -2 4 1250 942 219 45 0 chr11 87176953 87177154 -34666702 + B3 SINE B2 5 214 -2 4 1250 21 0 0 0 chr11 87177173 87177194 -34666662 + AT_rich Low_complexity Low_complexity 1 21 0 4 1250 473 211 19 19 chr11 87177268 87177374 -34666482 + PB1D10 SINE Alu 11 116 -1 4 1250 562 160 26 0 chr11 87177511 87177623 -34666233 + B1_Mur3 SINE Alu 3 124 -25 4 1250 341 43 21 0 chr11 87177625 87177672 -34666184 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 1250 230 240 20 0 chr11 87177746 87177796 -34666060 + ID SINE ID 6 56 -168 4 1250 1163 37 0 0 chr11 87177823 87177958 -34665898 + B1_Mus1 SINE Alu 2 136 -12 4 1250 411 21 0 0 chr11 87177958 87178006 -34665850 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 4 1250 201 74 0 0 chr11 87178031 87178058 -34665798 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1250 504 325 31 10 chr11 87178119 87178312 -34665544 + LTR33A_ LTR ERVL 2 198 -333 4 1250 354 242 55 0 chr11 87178383 87178474 -34665382 + LTR33A_ LTR ERVL 305 400 -131 4 1250 247 318 18 9 chr11 87178784 87178895 -34664961 + L1MC2 LINE L1 6122 6233 -111 4 1250 1047 75 0 81 chr11 87179056 87179230 -34664626 + B2_Mm2 SINE B2 36 195 0 4 1250 722 267 23 0 chr11 87179361 87179537 -34664319 + B3A SINE B2 1 180 -18 4 1250 742 176 62 62 chr11 87179561 87179688 -34664168 + B1_Mm SINE Alu 2 135 -12 4 1250 675 117 0 0 chr11 87179688 87179791 -34664065 + (CAGA)n Simple_repeat Simple_repeat 2 104 0 5 1250 742 176 62 62 chr11 87179791 87179808 -34664048 + B1_Mm SINE Alu 136 146 -1 4 1250 1112 83 63 42 chr11 87179813 87180002 -34663854 + B2_Mm2 SINE B2 2 194 -1 5 1250 486 195 156 92 chr11 87180252 87180393 -34663463 - B1_Mur4 SINE Alu 0 150 1 5 1250 770 189 0 0 chr11 87180410 87180553 -34663303 - B1_Mus1 SINE Alu 0 148 6 5 1250 213 336 54 45 chr11 87180454 87180566 -34663290 - B4A SINE B4 -98 194 82 5 1250 24 85 0 0 chr11 87180817 87180876 -34662980 + AT_rich Low_complexity Low_complexity 1 59 0 5 1250 21 57 0 0 chr11 87181442 87181477 -34662379 + AT_rich Low_complexity Low_complexity 1 35 0 5 1250 326 268 152 16 chr11 87182156 87182281 -34661575 + B1F SINE Alu 6 147 -2 5 1250 500 242 186 36 chr11 87182283 87182450 -34661406 + B3 SINE B2 11 202 -14 5 1250 1552 48 16 0 chr11 87182711 87182900 -34660956 - B2_Mm1a SINE B2 0 193 2 5 1250 468 204 39 10 chr11 87183206 87183310 -34660546 - ID_B1 SINE B4 -11 213 107 5 1250 904 128 6 6 chr11 87183350 87183420 -34660436 + (GGA)n Simple_repeat Simple_repeat 3 72 0 5 1250 1386 56 0 0 chr11 87183420 87183600 -34660256 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1250 904 128 6 6 chr11 87183600 87183686 -34660170 + (GGA)n Simple_repeat Simple_repeat 1 87 0 5 1250 231 398 44 9 chr11 87183740 87183852 -34660004 - MLT1H1 LTR MaLR -249 306 191 5 1250 231 253 9 120 chr11 87183852 87183960 -34659896 + PB1D10 SINE Alu 1 96 -21 5 1250 443 220 40 0 chr11 87183989 87184089 -34659767 - B1_Mus2 SINE Alu -1 146 43 5 1250 686 194 16 0 chr11 87184567 87184696 -34659160 + B1_Mur1 SINE Alu 14 144 -5 5 1250 511 175 8 8 chr11 87184727 87184848 -34659008 + (TA)n Simple_repeat Simple_repeat 2 122 0 5 1250 198 143 0 0 chr11 87184963 87184998 -34658858 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1250 201 180 0 0 chr11 87185097 87185147 -34658709 + T-rich Low_complexity Low_complexity 1 50 0 5 1250 785 58 0 0 chr11 87185155 87185258 -34658598 - B1_Mus2 SINE Alu -2 145 43 5 1250 552 221 0 26 chr11 87185830 87185946 -34657910 - PB1D7 SINE Alu -2 118 6 5 1250 306 238 195 8 chr11 87186321 87186444 -34657412 + B4 SINE B4 126 271 -21 5 1250 229 62 0 0 chr11 87186528 87186560 -34657296 + B3A SINE B2 3 34 -164 5 1250 778 119 7 7 chr11 87186620 87186755 -34657101 + (TTC)n Simple_repeat Simple_repeat 3 137 0 5 1250 576 0 0 0 chr11 87186752 87186816 -34657040 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1250 993 155 0 0 chr11 87186830 87186972 -34656884 - B1_Mur4 SINE Alu -5 145 4 5 1250 1153 93 0 0 chr11 87187084 87187246 -34656610 + B2_Mm2 SINE B2 3 164 -31 5 1250 676 291 38 19 chr11 87187245 87187455 -34656401 - B4A SINE B4 -78 214 1 5 1250 824 128 0 134 chr11 87187835 87188006 -34655850 + B1_Mur4 SINE Alu 1 148 -2 5 1250 756 216 61 31 chr11 87188064 87188260 -34655596 + B3 SINE B2 5 206 -10 5 1250 1205 49 7 0 chr11 87188269 87188413 -34655443 + B1_Mus2 SINE Alu 1 145 -2 5 1250 189 0 0 0 chr11 87188417 87188438 -34655418 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1250 360 193 96 0 chr11 87188606 87188689 -34655167 - ID_B1 SINE B4 -13 211 121 5 1250 506 59 0 0 chr11 87188891 87188959 -34654897 + L1_Mus2 LINE L1 6499 6566 0 5 1250 234 198 21 138 chr11 87189607 87189701 -34654155 + ID4 SINE ID 1 83 0 5 1250 466 163 22 40 chr11 87189715 87189854 -34654002 - RMER6B LTR ERVK -569 187 4 5 1250 580 258 126 0 chr11 87189895 87190054 -34653802 - B3A SINE B2 -18 180 2 5 1250 248 139 0 0 chr11 87190065 87190101 -34653755 + B3A SINE B2 97 132 -66 5 1250 885 14 17 4 chr11 87190232 87190351 -34653505 + B1_Mm SINE Alu 33 147 0 5 1250 368 175 155 0 chr11 87190553 87190650 -34653206 + B1_Mur1 SINE Alu 17 128 -21 5 1250 2026 152 79 14 chr11 87190666 87191034 -34652822 - ORR1B1 LTR MaLR -1 393 2 5 1250 549 0 0 0 chr11 87191040 87191101 -34652755 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1250 736 196 201 36 chr11 87191152 87191442 -34652414 + RMER13A LTR ERVK 164 504 -123 5 1250 788 216 110 30 chr11 87191681 87191881 -34651975 - B3 SINE B2 0 216 1 5 1250 333 275 72 40 chr11 87191940 87192065 -34651791 + B3A SINE B2 74 202 -14 5 1250 251 241 0 0 chr11 87192226 87192280 -34651576 + B4A SINE B4 1 54 -238 5 1250 255 241 44 44 chr11 87192405 87192496 -34651360 + B2_Mm2 SINE B2 1 91 -104 5 1250 375 243 57 29 chr11 87192496 87192551 -34651305 + RSINE1 SINE B4 1 155 -69 5 1250 517 284 40 26 chr11 87192610 87192762 -34651094 + B3A SINE B2 1 154 -44 5 1250 357 89 0 43 chr11 87192762 87192832 -34651024 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1250 510 235 9 9 chr11 87193402 87193518 -34650338 + PB1D10 SINE Alu 2 117 0 5 1250 838 146 14 7 chr11 87193631 87193776 -34650080 + B1_Mus2 SINE Alu 2 147 0 5 1250 366 186 150 30 chr11 87193945 87194045 -34649811 - PB1D10 SINE Alu -1 116 5 5 1250 21 0 0 0 chr11 87194650 87194671 -34649185 + AT_rich Low_complexity Low_complexity 1 21 0 5 1250 285 294 26 60 chr11 87194671 87194684 -34649172 + MT2B LTR ERVL 153 161 -440 5 1250 536 181 94 9 chr11 87194684 87194790 -34649066 + B1_Mus2 SINE Alu 1 115 -32 5 1250 717 214 82 12 chr11 87194891 87195061 -34648795 - B3A SINE B2 -15 183 2 5 1250 873 164 14 7 chr11 87195131 87195278 -34648578 - B1_Mus1 SINE Alu 0 148 1 5 1250 813 269 32 32 chr11 87195324 87195543 -34648313 - B4A SINE B4 -73 219 1 5 1250 291 267 96 30 chr11 87195621 87195756 -34648100 + B1F SINE Alu 1 144 -5 5 1250 1357 73 45 0 chr11 87195766 87195945 -34647911 - B2_Mm2 SINE B2 -8 187 1 5 1250 358 286 0 0 chr11 87195954 87196031 -34647825 - ID4 SINE ID -1 82 6 5 1250 1051 223 211 5 chr11 87196058 87196442 -34647414 + L1MB3 LINE L1 5714 6176 -7 5 1250 715 254 7 0 chr11 87196514 87196656 -34647200 - ID_B1 SINE B4 -1 223 81 5 1250 721 254 76 0 chr11 87196780 87196965 -34646891 + B3 SINE B2 2 200 -16 5 1250 200 114 29 0 chr11 87196972 87197007 -34646849 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 5 1250 1378 70 32 0 chr11 87197087 87197273 -34646583 + B2_Mm2 SINE B2 2 193 -2 5 1250 802 158 0 99 chr11 87197289 87197451 -34646405 + B1_Mus1 SINE Alu 3 148 0 5 1250 1422 105 16 0 chr11 87197455 87197646 -34646210 + B2_Mm2 SINE B2 2 195 0 5 1250 1708 26 0 0 chr11 87197660 87197853 -34646003 + B2_Mm1a SINE B2 1 193 0 5 1250 275 260 62 38 chr11 87197886 87197966 -34645890 + ID4_ SINE ID 2 83 0 5 1250 252 260 0 0 chr11 87197979 87198029 -34645827 + PB1D9 SINE Alu 1 50 -70 5 1250 242 235 172 23 chr11 87198187 87198274 -34645582 + RSINE1 SINE B4 9 108 -57 5 1250 1218 41 0 14 chr11 87198360 87198508 -34645348 + B1_Mus1 SINE Alu 2 147 -1 5 1250 225 0 0 0 chr11 87198515 87198540 -34645316 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1250 1338 90 32 0 chr11 87198550 87198739 -34645117 + B2_Mm2 SINE B2 1 195 0 5 1250 268 224 35 0 chr11 87198874 87198932 -34644924 - PB1D10 SINE Alu -11 106 47 5 1250 307 262 74 12 chr11 87199020 87199101 -34644755 + B1F SINE Alu 3 88 -61 5 1250 326 252 237 26 chr11 87199541 87199655 -34644201 + B1_Mur1 SINE Alu 9 146 -3 5 1250 1229 40 0 20 chr11 87199657 87199808 -34644048 + B1_Mus1 SINE Alu 1 148 0 5 1250 300 353 23 0 chr11 87200068 87200201 -34643655 + ID_B1 SINE B4 86 221 -3 5 1250 260 294 0 14 chr11 87200249 87200318 -34643538 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 5 1250 896 161 44 44 chr11 87200782 87200964 -34642892 + B3 SINE B2 29 210 -6 5 1250 679 180 0 0 chr11 87200985 87201096 -34642760 + PB1D9 SINE Alu 1 111 -9 5 1250 455 202 106 0 chr11 87201160 87201264 -34642592 - B1F SINE Alu -34 115 1 5 1250 606 211 16 8 chr11 87202353 87202477 -34641379 - B1_Mur1 SINE Alu -12 137 13 5 1250 2127 41 22 15 chr11 87202814 87203087 -34640769 - L1Md_F3 LINE L1 -14 6570 6296 5 1250 296 205 192 0 chr11 87203217 87203295 -34640561 + PB1D9 SINE Alu 28 120 0 5 1250 520 292 45 13 chr11 87203532 87203688 -34640168 + B3 SINE B2 50 210 -6 5 1250 1011 113 0 0 chr11 87203733 87203883 -34639973 + B2_Mm2 SINE B2 1 150 -45 5 1250 1353 74 21 26 chr11 87203945 87204139 -34639717 + B2_Mm2 SINE B2 2 194 -1 5 1250 1208 55 7 0 chr11 87204237 87204382 -34639474 + B1_Mus1 SINE Alu 2 147 -1 5 1250 650 166 16 0 chr11 87204485 87204606 -34639250 - B1_Mus2 SINE Alu -9 138 18 5 1250 639 285 38 79 chr11 87204622 87204862 -34638994 - B4A SINE B4 -62 230 1 5 1250 728 206 29 0 chr11 87204987 87205123 -34638733 + B1_Mur2 SINE Alu 1 140 -9 5 1250 317 159 56 28 chr11 87205230 87205301 -34638555 - BC1_Mm scRNA scRNA -79 73 1 5 1250 640 192 62 0 chr11 87205343 87205473 -34638383 - ID_B1 SINE B4 0 224 87 5 1250 512 217 278 0 chr11 87205492 87205607 -34638249 - B1F2 SINE Alu 0 149 3 5 1250 242 175 17 34 chr11 87205663 87205722 -34638134 + B1F1 SINE Alu 90 147 -2 6 1250 876 244 45 5 chr11 87205741 87205943 -34637913 + B3 SINE B2 1 210 -6 6 1250 1117 96 0 0 chr11 87206036 87206182 -34637674 - B1_Mus1 SINE Alu 0 148 3 6 1250 622 274 7 7 chr11 87206217 87206364 -34637492 + B1_Mur1 SINE Alu 2 148 -1 6 1250 369 328 131 50 chr11 87206391 87206651 -34637205 + B4 SINE B4 12 292 0 6 1250 306 146 18 35 chr11 87206767 87206824 -34637032 + B4A SINE B4 11 66 -226 6 1250 640 253 86 7 chr11 87206906 87207057 -34636799 + RSINE1 SINE B4 3 165 0 6 1250 221 0 0 33 chr11 87207082 87207112 -34636744 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1250 1001 47 70 0 chr11 87207112 87207240 -34636616 - B1_Mus2 SINE Alu -10 137 1 6 1250 409 147 0 0 chr11 87207262 87207330 -34636526 + B4A SINE B4 217 284 -8 6 1250 229 245 0 0 chr11 87207435 87207484 -34636372 + ID4_ SINE ID 2 50 -33 6 1250 516 245 94 40 chr11 87207678 87207827 -34636029 + RSINE1 SINE B4 3 159 -6 6 1250 1281 48 0 6 chr11 87207967 87208136 -34635720 - B2_Mm2 SINE B2 -26 169 2 6 1250 221 242 54 108 chr11 87208389 87208463 -34635393 + ID4 SINE ID 13 82 -1 6 1250 248 315 130 8 chr11 87208505 87208636 -34635220 + B1F1 SINE Alu 1 147 -2 6 1250 738 189 0 83 chr11 87209041 87209163 -34634693 + B3A SINE B2 1 113 -85 6 1250 889 165 163 10 chr11 87209163 87209359 -34634497 + URR1A DNA MER1_type 1 226 0 6 1250 738 189 0 83 chr11 87209359 87209392 -34634464 + B3A SINE B2 114 143 -55 6 1250 413 308 0 0 chr11 87209421 87209525 -34634331 + PB1D10 SINE Alu 5 108 -9 6 1250 363 176 26 51 chr11 87209555 87209633 -34634223 - ID4_ SINE ID 0 83 8 6 1250 1169 189 14 9 chr11 87209679 87209893 -34633963 - B3 SINE B2 0 216 2 6 1250 314 96 0 37 chr11 87209978 87210032 -34633824 + B1_Mur4 SINE Alu 99 150 0 6 1250 239 213 62 62 chr11 87210047 87210127 -34633729 + ID_B1 SINE B4 78 157 -67 6 1250 505 110 15 27 chr11 87210152 87210249 -34633607 + B1_Mus2 SINE Alu 54 148 -1 6 1250 1152 76 0 0 chr11 87210284 87210429 -34633427 + B1_Mm SINE Alu 2 146 -1 6 1250 1318 85 28 0 chr11 87210494 87210670 -34633186 + B2_Mm1a SINE B2 1 181 -12 6 1250 180 0 0 0 chr11 87210670 87210690 -34633166 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1250 1114 87 0 0 chr11 87210817 87210978 -34632878 + B2_Mm2 SINE B2 1 161 -34 6 1250 306 0 0 0 chr11 87210978 87211012 -34632844 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 1250 2023 181 130 8 chr11 87211455 87211941 -34631915 - RMER19B LTR ERVK 0 902 358 6 1250 722 205 85 16 chr11 87211991 87212179 -34631677 + B3 SINE B2 6 206 -10 6 1250 207 0 0 0 chr11 87212245 87212268 -34631588 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1250 1215 47 0 7 chr11 87212268 87212407 -34631449 - B1_Mus1 SINE Alu -9 139 1 6 1250 831 223 36 21 chr11 87212439 87212631 -34631225 - B3 SINE B2 -21 195 1 6 1250 282 207 15 84 chr11 87212631 87212713 -34631143 + RSINE1 SINE B4 24 105 -60 6 1250 2900 63 0 0 chr11 87212714 87213080 -34630776 + L1Md_T LINE L1 6217 6582 0 6 1250 1612 42 0 5 chr11 87213170 87213363 -34630493 - B2_Mm1a SINE B2 0 193 2 6 1250 770 194 6 12 chr11 87213387 87213549 -34630307 - B2_Mm2 SINE B2 -29 166 6 6 1250 384 269 3 0 chr11 87213574 87213666 -34630190 + B1F SINE Alu 53 146 -3 6 1250 399 89 0 0 chr11 87213713 87213769 -34630087 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1250 654 311 0 0 chr11 87213773 87213921 -34629935 - RSINE1 SINE B4 -14 151 4 6 1250 788 149 28 21 chr11 87214004 87214148 -34629708 + B1_Mur4 SINE Alu 6 150 0 6 1250 321 323 54 16 chr11 87214155 87214284 -34629572 + B3 SINE B2 27 160 -56 6 1250 384 198 0 47 chr11 87214359 87214444 -34629412 - B3 SINE B2 -88 128 48 6 1250 25 0 0 0 chr11 87214455 87214480 -34629376 + AT_rich Low_complexity Low_complexity 1 25 0 6 1250 1558 48 16 0 chr11 87214490 87214677 -34629179 + B2_Mm2 SINE B2 2 191 -4 6 1250 273 235 0 0 chr11 87214700 87214751 -34629105 + B1F1 SINE Alu 13 63 -86 6 1250 294 191 0 14 chr11 87215317 87215386 -34628470 - PB1D10 SINE Alu -9 108 41 6 1250 277 260 51 171 chr11 87215440 87215532 -34628324 - B1F SINE Alu -1 148 79 6 1250 1262 116 16 5 chr11 87215532 87215722 -34628134 - B2_Mm1t SINE B2 -1 192 1 6 1250 277 260 51 171 chr11 87215722 87215787 -34628069 - B1F SINE Alu -71 78 10 6 1250 519 147 211 0 chr11 87216416 87216525 -34627331 + B1_Mur3 SINE Alu 1 132 -17 6 1250 1449 62 15 15 chr11 87216541 87216736 -34627120 - B2_Mm2 SINE B2 0 195 1 6 1250 242 260 79 40 chr11 87216906 87216982 -34626874 + ID4_ SINE ID 3 81 -2 6 1250 1230 41 7 0 chr11 87217119 87217266 -34626590 - B1_Mus1 SINE Alu 0 148 1 6 1250 234 0 0 0 chr11 87217922 87217948 -34625908 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1250 213 229 0 0 chr11 87218520 87218568 -34625288 + (CACG)n Simple_repeat Simple_repeat 4 51 0 6 1250 936 78 0 8 chr11 87218885 87219014 -34624842 + B1_Mus1 SINE Alu 2 129 -19 6 1250 188 139 47 0 chr11 87219159 87219183 -34624673 + T-rich Low_complexity Low_complexity 25 48 0 6 1250 1120 95 0 0 chr11 87219183 87219330 -34624526 - B1_Mus2 SINE Alu 0 147 1 6 1250 188 139 47 0 chr11 87219330 87219348 -34624508 + T-rich Low_complexity Low_complexity 5 24 0 6 1250 570 190 13 99 chr11 87219358 87219510 -34624346 - B1_Mur4 SINE Alu -7 143 5 6 1250 706 64 264 0 chr11 87219525 87219635 -34624221 + B1_Mus1 SINE Alu 1 139 -9 6 1250 346 273 88 34 chr11 87219716 87219864 -34623992 - RSINE1 SINE B4 -2 163 8 6 1250 220 212 0 130 chr11 87220328 87220408 -34623448 + PB1D9 SINE Alu 40 109 -11 6 1250 243 0 0 0 chr11 87220408 87220435 -34623421 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1250 220 212 0 130 chr11 87220435 87220446 -34623410 + PB1D9 SINE Alu 110 119 -1 6 1250 1015 107 214 6 chr11 87220451 87220629 -34623227 + B3 SINE B2 2 216 0 6 1250 916 127 89 0 chr11 87220637 87220795 -34623061 - B2_Mm2 SINE B2 -22 173 2 6 1250 22 35 0 0 chr11 87220802 87220831 -34623025 + AT_rich Low_complexity Low_complexity 1 29 0 6 1250 1015 269 129 9 chr11 87220856 87221306 -34622550 + L1MC1 LINE L1 5662 6165 -168 6 1250 383 267 21 43 chr11 87221666 87221807 -34622049 + ID_B1 SINE B4 87 224 0 6 1250 565 281 28 28 chr11 87221968 87222144 -34621712 - L1MB3 LINE L1 -190 5993 5818 6 1250 261 0 0 0 chr11 87222144 87222173 -34621683 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1250 464 244 65 0 chr11 87222218 87222341 -34621515 - RSINE1 SINE B4 -32 133 3 6 1250 429 323 40 73 chr11 87222375 87222552 -34621304 + B4A SINE B4 2 172 -120 6 1250 2472 144 11 55 chr11 87222565 87222707 -34621149 - MTC LTR MaLR 0 421 286 6 1250 1312 73 89 0 chr11 87222707 87222886 -34620970 + B2_Mm2 SINE B2 1 195 0 6 1250 2472 144 11 55 chr11 87222886 87223183 -34620673 - MTC LTR MaLR -136 285 1 6 1250 1058 254 158 75 chr11 87223334 87223981 -34619875 - RMER13A LTR ERVK -83 777 1 6 1250 341 302 101 0 chr11 87223981 87224106 -34619750 + B1F SINE Alu 12 149 0 6 1250 444 236 160 30 chr11 87224123 87224254 -34619602 + B1_Mur1 SINE Alu 2 149 0 6 1250 1219 159 37 41 chr11 87224435 87224859 -34618997 + RMER10B LTR ERVL 19 398 0 6 1250 223 227 182 0 chr11 87224860 87224926 -34618930 - ID4_ SINE ID -4 79 2 6 1250 228 346 69 0 chr11 87224937 87225038 -34618818 - PB1D10 SINE Alu -9 108 1 6 1250 441 0 0 0 chr11 87225057 87225106 -34618750 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 6 1250 373 300 69 8 chr11 87225106 87225237 -34618619 - B1F SINE Alu -10 139 1 6 1250 375 258 32 11 chr11 87225389 87225483 -34618373 + RSINE1 SINE B4 2 97 -68 6 1250 1178 62 7 0 chr11 87225489 87225634 -34618222 + B1_Mm SINE Alu 2 147 0 6 1250 25 0 0 0 chr11 87225634 87225659 -34618197 + AT_rich Low_complexity Low_complexity 1 25 0 6 1250 411 288 23 39 chr11 87226002 87226132 -34617724 + RSINE1 SINE B4 38 165 0 6 1250 799 167 0 53 chr11 87226272 87226417 -34617439 + B1_Mm SINE Alu 2 139 -8 6 1250 186 43 0 0 chr11 87226417 87226440 -34617416 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 6 1250 1596 47 0 20 chr11 87226574 87226771 -34617085 - B2_Mm1a SINE B2 0 193 1 6 1250 485 272 88 122 chr11 87226842 87226881 -34616975 + B3 SINE B2 3 41 -175 6 1250 1199 54 0 0 chr11 87226881 87227028 -34616828 + B1_Mus1 SINE Alu 2 148 0 6 1250 485 272 88 122 chr11 87227028 87227193 -34616663 + B3 SINE B2 42 200 -16 6 1250 1215 48 0 7 chr11 87227212 87227359 -34616497 - B1_Mm SINE Alu 0 147 2 6 1250 458 217 217 0 chr11 87227442 87227562 -34616294 + B1_Mur3 SINE Alu 4 149 0 6 1250 1064 96 0 40 chr11 87227723 87227875 -34615981 + B1_Mus1 SINE Alu 1 146 -2 6 1250 23 33 0 0 chr11 87228257 87228287 -34615569 + AT_rich Low_complexity Low_complexity 1 30 0 6 1250 415 200 128 20 chr11 87228297 87228399 -34615457 - ID_B1 SINE B4 -108 116 4 6 1250 972 271 159 0 chr11 87228494 87228815 -34615041 - MTD LTR MaLR 0 419 48 6 1250 702 157 124 0 chr11 87228816 87228937 -34614919 + B1_Mus1 SINE Alu 2 137 -11 6 1250 1018 96 191 0 chr11 87229082 87229239 -34614617 + B2_Mm1t SINE B2 1 187 -6 6 1250 422 296 110 7 chr11 87229265 87229411 -34614445 + U1 snRNA snRNA 1 161 -4 6 1250 480 107 0 0 chr11 87229630 87229705 -34614151 - RMER10B LTR ERVL -323 75 1 7 1250 180 0 0 0 chr11 87229948 87229968 -34613888 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1250 1116 58 0 0 chr11 87229968 87230107 -34613749 - B1_Mus1 SINE Alu -9 139 1 7 1250 696 197 0 74 chr11 87230562 87230710 -34613146 - B1_Mur1 SINE Alu 0 149 13 7 1250 1562 148 0 89 chr11 87230710 87231059 -34612797 - RMER10B LTR ERVL -2 396 79 7 1250 480 239 17 25 chr11 87231133 87231253 -34612603 + PB1D9 SINE Alu 2 120 0 7 1250 870 221 68 5 chr11 87231278 87231469 -34612387 + B3 SINE B2 1 203 -13 7 1250 270 194 0 0 chr11 87231484 87231546 -34612310 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 7 1250 523 222 173 49 chr11 87231561 87231746 -34612110 + B3 SINE B2 1 208 -8 7 1250 479 344 39 0 chr11 87231771 87231925 -34611931 - RSINE1 SINE B4 -4 161 2 7 1250 294 269 97 0 chr11 87232006 87232017 -34611839 - B1F1 SINE Alu -31 118 18 7 1250 360 259 37 0 chr11 87232017 87232098 -34611758 - ID_B1 SINE B4 -42 182 99 7 1250 549 175 0 0 chr11 87232124 87232227 -34611629 + CT-rich Low_complexity Low_complexity 3 105 0 7 1250 245 51 26 0 chr11 87232265 87232304 -34611552 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 7 1250 819 73 192 16 chr11 87232306 87232431 -34611425 - B1_Mus1 SINE Alu 0 148 2 7 1250 232 333 32 11 chr11 87232599 87232693 -34611163 - PB1D9 SINE Alu -23 97 2 7 1250 469 163 261 35 chr11 87232744 87232896 -34610960 + B3 SINE B2 11 187 -8 7 1250 22 35 0 0 chr11 87233005 87233034 -34610822 + AT_rich Low_complexity Low_complexity 1 29 0 7 1250 1392 69 16 16 chr11 87233086 87233277 -34610579 - B2_Mm2 SINE B2 -4 191 1 7 1250 615 220 8 15 chr11 87233331 87233465 -34610391 - B1_Mur1 SINE Alu -5 144 12 7 1250 2039 156 54 22 chr11 87233465 87233657 -34610199 - RLTR14 LTR ERV1 0 382 198 7 1250 1607 32 5 5 chr11 87233657 87233848 -34610008 + B2_Mm1a SINE B2 1 191 -2 7 1250 2039 156 54 22 chr11 87233848 87234023 -34609833 - RLTR14 LTR ERV1 -185 197 4 7 1250 871 146 28 28 chr11 87234166 87234342 -34609514 - B2_Mm2 SINE B2 -5 190 15 7 1250 292 161 93 58 chr11 87234342 87234428 -34609428 - L1MD LINE L1 -660 5582 5494 7 1250 308 186 96 58 chr11 87234429 87234550 -34609306 - B1_Mur2 SINE Alu -1 148 2 7 1250 393 241 31 94 chr11 87234687 87234847 -34609009 - B3A SINE B2 -4 212 63 7 1250 1393 83 16 10 chr11 87234868 87235062 -34608794 - B2_Mm2 SINE B2 0 195 1 7 1250 1607 115 53 118 chr11 87235162 87235536 -34608320 - RMER15 LTR ERVL 0 575 226 7 1250 1493 12 0 0 chr11 87236368 87236533 -34607323 + U1 snRNA snRNA 1 165 0 7 1250 223 313 30 0 chr11 87237073 87237140 -34606716 + ID4 SINE ID 9 77 -6 7 1250 385 180 217 33 chr11 87237234 87237326 -34606530 - B1_Mur4 SINE Alu -24 126 18 7 1250 916 35 0 0 chr11 87237329 87237445 -34606411 + B2_Mm1t SINE B2 1 116 -77 7 1250 327 65 0 0 chr11 87237456 87237502 -34606354 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 7 1250 864 219 15 39 chr11 87237523 87237727 -34606129 - B3 SINE B2 -16 200 2 7 1250 733 196 29 0 chr11 87238131 87238269 -34605587 + B1_Mus1 SINE Alu 5 146 -2 7 1250 694 251 65 10 chr11 87238421 87238622 -34605234 + B3 SINE B2 2 213 -3 7 1250 189 0 0 0 chr11 87238804 87238825 -34605031 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1250 1101 75 0 13 chr11 87239321 87239470 -34604386 - B1_Mus1 SINE Alu 0 148 2 7 1250 201 39 0 0 chr11 87239846 87239872 -34603984 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 1250 1486 12 0 0 chr11 87240217 87240381 -34603475 + U1 snRNA snRNA 1 164 -1 7 1250 1111 49 20 14 chr11 87240609 87240755 -34603101 - B1_Mus2 SINE Alu 0 147 1 7 1250 24 32 0 0 chr11 87240763 87240794 -34603062 + AT_rich Low_complexity Low_complexity 1 31 0 7 1250 515 180 24 24 chr11 87240804 87240929 -34602927 + ORR1D1 LTR MaLR 1 125 -249 7 1250 373 228 109 42 chr11 87240954 87241073 -34602783 + ORR1D1 LTR MaLR 240 366 -8 7 1250 719 129 120 8 chr11 87241076 87241209 -34602647 + B1_Mur2 SINE Alu 1 148 -1 7 1250 355 239 32 89 chr11 87241340 87241464 -34602392 - ID_B1 SINE B4 -14 210 94 7 1250 284 271 35 78 chr11 87241471 87241587 -34602269 - PB1D7 SINE Alu -7 113 3 7 1250 251 336 37 0 chr11 87241745 87241852 -34602004 - MLT1A0 LTR MaLR -226 139 29 7 1250 274 268 0 27 chr11 87241851 87241924 -34601932 - ORR1D1 LTR MaLR -303 71 1 7 1250 293 293 93 17 chr11 87241937 87242055 -34601801 - MIR SINE MIR -17 245 119 7 1250 390 236 214 18 chr11 87242854 87242865 -34600991 - ID_B1 SINE B4 0 224 214 7 1250 360 0 0 0 chr11 87242865 87242905 -34600951 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 7 1250 390 236 214 18 chr11 87242905 87243005 -34600851 - ID_B1 SINE B4 -11 213 91 7 1250 1031 243 28 3 chr11 87243013 87243302 -34600554 - RMER15 LTR ERVL -3 572 277 7 1250 1207 78 87 27 chr11 87243407 87243591 -34600265 - B2_Mm2 SINE B2 0 195 1 7 1250 815 278 0 16 chr11 87243648 87243842 -34600014 - B3 SINE B2 -7 209 19 7 1250 381 236 11 22 chr11 87243884 87243975 -34599881 + B1F SINE Alu 13 102 -47 7 1250 304 274 102 8 chr11 87244002 87244120 -34599736 + ID_B1 SINE B4 82 210 -14 7 1250 401 276 47 9 chr11 87244179 87244285 -34599571 + B1F SINE Alu 18 127 -22 7 1250 966 261 140 9 chr11 87244334 87244662 -34599194 - MTE2b LTR MaLR -8 371 1 7 1250 4247 17 2 6 chr11 87244666 87245150 -34598706 + L1Md_A LINE L1 6101 6582 0 7 1250 347 283 53 43 chr11 87245150 87245310 -34598546 + MER2 DNA MER2_type 86 247 -98 7 1250 1307 72 50 6 chr11 87245310 87245491 -34598365 - B2_Mm2 SINE B2 -6 189 1 7 1250 347 283 53 43 chr11 87245491 87245518 -34598338 + MER2 DNA MER2_type 248 274 -71 7 1250 886 85 92 0 chr11 87245518 87245648 -34598208 + B1_Mus1 SINE Alu 1 142 -6 7 1250 1201 81 5 26 chr11 87245668 87245858 -34597998 + B2_Mm1a SINE B2 8 193 0 7 1250 222 62 0 0 chr11 87245881 87245913 -34597943 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1250 255 286 0 125 chr11 87245913 87245993 -34597863 + MER2 DNA MER2_type 267 336 -9 7 1250 272 263 202 8 chr11 87246041 87246160 -34597696 + B1F SINE Alu 1 142 -7 7 1250 1306 75 34 6 chr11 87246170 87246345 -34597511 + B2_Mm2 SINE B2 2 181 -14 7 1250 418 114 42 83 chr11 87246345 87246431 -34597425 - L1Md_F3 LINE L1 -14 6570 6486 7 1250 261 250 17 0 chr11 87246483 87246543 -34597313 + tRNA-Ala-GCA tRNA tRNA 6 66 -9 7 1250 561 182 26 35 chr11 87246575 87246689 -34597167 - ORR1C2 LTR MaLR -248 136 24 7 1250 644 139 0 83 chr11 87246716 87246849 -34597007 - B1_Mur4 SINE Alu 0 150 29 7 1250 502 201 40 73 chr11 87247522 87247672 -34596184 + B1_Mm SINE Alu 2 146 -1 7 1250 505 286 43 32 chr11 87247713 87247901 -34595955 + ID_B1 SINE B4 1 190 -34 7 1250 1206 163 40 51 chr11 87247947 87248273 -34595583 - RMER17C LTR ERVK -519 439 91 7 1250 1246 41 0 0 chr11 87248273 87248418 -34595438 + B1_Mus2 SINE Alu 2 146 -1 7 1250 628 192 23 167 chr11 87248418 87248581 -34595275 - RMER17C LTR ERVK -629 329 183 7 1250 276 346 51 0 chr11 87248610 87248688 -34595168 + B3A SINE B2 73 154 -44 7 1250 737 204 15 0 chr11 87248685 87248830 -34595026 + B1_Mur3 SINE Alu 13 200 -111 7 1250 1372 73 0 50 chr11 87248832 87249033 -34594823 + B2_Mm2 SINE B2 2 192 -3 7 1250 22 0 0 0 chr11 87249033 87249055 -34594801 + AT_rich Low_complexity Low_complexity 1 22 0 7 1250 435 124 9 17 chr11 87249055 87249170 -34594686 + (TAAA)n Simple_repeat Simple_repeat 4 117 0 7 1250 378 143 0 0 chr11 87249178 87249241 -34594615 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1250 283 216 0 0 chr11 87249718 87249769 -34594087 + G-rich Low_complexity Low_complexity 2 52 0 7 1250 1435 70 43 0 chr11 87250675 87250862 -34592994 + B2_Mm2 SINE B2 1 195 0 7 1250 29 28 0 0 chr11 87250862 87250898 -34592958 + AT_rich Low_complexity Low_complexity 1 36 0 7 1250 863 143 33 39 chr11 87251056 87251238 -34592618 - URR1A DNA MER1_type 0 226 46 7 1250 758 169 211 0 chr11 87251464 87251630 -34592226 - B3 SINE B2 -13 203 3 7 1250 246 32 0 0 chr11 87251837 87251868 -34591988 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 7 1250 294 286 26 26 chr11 87252738 87252853 -34591003 + PB1D10 SINE Alu 3 117 0 7 1250 308 333 20 0 chr11 87252875 87252974 -34590882 + PB1D7 SINE Alu 1 101 -19 7 1250 476 155 216 0 chr11 87252995 87253111 -34590745 + B1_Mus1 SINE Alu 2 142 -6 7 1250 904 212 209 17 chr11 87253525 87253822 -34590034 - ORR1D1 LTR MaLR -20 354 1 7 1250 629 218 15 0 chr11 87253958 87254091 -34589765 + B1_Mur2 SINE Alu 15 149 0 7 1250 25 31 0 0 chr11 87254202 87254234 -34589622 + AT_rich Low_complexity Low_complexity 1 32 0 7 1250 267 182 0 0 chr11 87254248 87254292 -34589564 - RSINE1 SINE B4 -45 120 77 7 1250 549 189 13 20 chr11 87254356 87254507 -34589349 - RMER17C LTR ERVK -260 150 1 7 1250 2695 56 17 26 chr11 87254635 87254984 -34588872 - ORR1A1 LTR MaLR 0 346 1 7 1250 515 262 95 30 chr11 87255024 87255193 -34588663 - B3A SINE B2 -16 182 3 7 1250 448 268 27 47 chr11 87255198 87255347 -34588509 - B1F SINE Alu -2 147 2 7 1250 475 193 91 16 chr11 87255483 87255604 -34588252 + B1F2 SINE Alu 20 149 0 7 1250 332 319 78 0 chr11 87256114 87256230 -34587626 - ID_B1 SINE B4 -13 211 87 7 1250 1409 122 9 0 chr11 87256738 87256952 -34586904 + U3 snRNA snRNA 1 216 -1 7 1250 994 134 11 86 chr11 87257262 87257449 -34586407 + B2_Mm1a SINE B2 2 174 -19 8 1250 2252 71 24 0 chr11 87257490 87257785 -34586071 - L1_Mus1 LINE L1 0 6567 6266 8 1250 1231 48 0 0 chr11 87257801 87257948 -34585908 + B1_Mm SINE Alu 1 147 0 8 1250 39 32 0 16 chr11 87257948 87257975 -34585881 + AT_rich Low_complexity Low_complexity 1 27 0 8 1250 955 19 0 0 chr11 87257975 87258082 -34585774 - U6 snRNA snRNA 0 107 1 8 1250 39 32 0 16 chr11 87258082 87258118 -34585738 + AT_rich Low_complexity Low_complexity 1 36 0 8 1250 1513 142 55 76 chr11 87258472 87258801 -34585055 - RLTRETN_Mm LTR ERVK 0 322 1 8 1250 1566 67 0 5 chr11 87259064 87259260 -34584596 - B2_Mm2 SINE B2 0 195 1 8 1250 207 0 0 0 chr11 87259370 87259393 -34584463 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1250 1143 75 0 7 chr11 87259467 87259615 -34584241 - B1_Mus1 SINE Alu 0 148 2 8 1250 517 260 15 44 chr11 87259616 87259753 -34584103 + B1_Mur1 SINE Alu 12 144 -5 8 1250 305 197 65 13 chr11 87259755 87259832 -34584024 + B1F SINE Alu 69 149 0 8 1250 239 290 43 0 chr11 87259854 87259923 -34583933 + B1F1 SINE Alu 45 116 -33 8 1250 994 60 0 36 chr11 87260551 87260689 -34583167 + B1_Mus1 SINE Alu 5 137 -11 8 1250 396 0 0 0 chr11 87260689 87260733 -34583123 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1250 249 364 21 14 chr11 87260772 87260917 -34582939 - B1_Mur1 SINE Alu -3 146 1 8 1250 974 106 0 19 chr11 87260951 87261105 -34582751 + B2_Mm2 SINE B2 2 152 -43 8 1250 393 105 14 0 chr11 87261141 87261206 -34582650 + B2_Mm2 SINE B2 46 116 -82 8 1250 339 242 62 10 chr11 87261249 87261345 -34582511 + L1M2 LINE L1 5715 5815 -497 8 1250 528 254 43 14 chr11 87261378 87261518 -34582338 - B1_Mur2 SINE Alu 0 149 6 8 1250 1409 122 9 0 chr11 87262128 87262342 -34581514 + U3 snRNA snRNA 1 216 -1 8 1250 407 293 182 13 chr11 87262848 87263007 -34580849 + B3A SINE B2 3 188 -10 8 1250 1399 71 11 0 chr11 87263011 87263194 -34580662 - B2_Mm1t SINE B2 -8 185 1 8 1250 1055 95 0 58 chr11 87263221 87263377 -34580479 - B1_Mus1 SINE Alu 0 148 2 8 1250 21 0 0 0 chr11 87263379 87263400 -34580456 + AT_rich Low_complexity Low_complexity 1 21 0 8 1250 755 168 21 14 chr11 87263421 87263566 -34580290 + B1_Mus2 SINE Alu 1 146 -1 8 1250 1440 54 38 0 chr11 87263571 87263756 -34580100 + B2_Mm1a SINE B2 2 193 0 8 1250 473 271 8 32 chr11 87263863 87263989 -34579867 - RSINE1 SINE B4 -40 125 3 8 1250 1269 56 78 6 chr11 87264002 87264181 -34579675 - B2_Mm2 SINE B2 -3 192 1 8 1250 447 327 51 45 chr11 87264309 87264485 -34579371 + B3A SINE B2 39 215 -1 8 1250 1005 129 0 0 chr11 87264537 87264684 -34579172 + B1_Mus1 SINE Alu 2 148 0 8 1250 209 151 0 19 chr11 87264700 87264754 -34579102 + G-rich Low_complexity Low_complexity 1 53 0 8 1250 256 215 14 84 chr11 87264754 87264825 -34579031 - B1_Mur3 SINE Alu -28 121 56 8 1250 475 226 57 166 chr11 87264868 87265043 -34578813 + B3A SINE B2 37 192 -3 8 1250 931 195 63 24 chr11 87265052 87265257 -34578599 + B3 SINE B2 1 213 -3 8 1250 528 282 51 56 chr11 87265397 87265611 -34578245 - B3A SINE B2 -1 215 3 8 1250 1719 26 0 0 chr11 87266018 87266211 -34577645 - B2_Mm1a SINE B2 0 193 1 8 1250 1694 26 0 0 chr11 87266225 87266417 -34577439 - B2_Mm1a SINE B2 0 193 2 8 1250 244 274 91 66 chr11 87266453 87266574 -34577282 + U3 snRNA snRNA 94 217 0 8 1250 591 195 97 8 chr11 87266604 87266728 -34577128 + B1_Mur4 SINE Alu 16 150 0 8 1250 249 277 60 12 chr11 87266770 87266854 -34577002 - B1F SINE Alu -61 88 1 8 1250 991 158 36 144 chr11 87266902 87267263 -34576593 - RLTRETN_Mm LTR ERVK 0 322 1 8 1250 1208 47 0 13 chr11 87267816 87267966 -34575890 - B1_Mus1 SINE Alu 0 148 1 8 1250 221 264 19 0 chr11 87267967 87268020 -34575836 + PB1D10 SINE Alu 49 102 -15 8 1250 372 299 51 0 chr11 87268050 87268187 -34575669 + B1F1 SINE Alu 5 148 -1 8 1250 444 248 63 38 chr11 87268464 87268623 -34575233 - B3A SINE B2 -35 163 1 8 1250 195 295 66 0 chr11 87268628 87268689 -34575167 + L2c LINE L2 3093 3157 -230 8 1250 319 312 10 10 chr11 87268951 87269048 -34574808 - ID_B1 SINE B4 -44 180 84 8 1250 1024 137 0 0 chr11 87269264 87269410 -34574446 - B1_Mus1 SINE Alu -2 146 1 8 1250 339 253 12 0 chr11 87270131 87270214 -34573642 + PB1D9 SINE Alu 26 109 -11 8 1250 429 20 0 0 chr11 87270216 87270266 -34573590 + (CCAA)n Simple_repeat Simple_repeat 1 50 0 8 1250 226 214 0 0 chr11 87270276 87270288 -34573568 + A-rich Low_complexity Low_complexity 1 12 0 8 1250 1279 20 0 0 chr11 87270288 87270435 -34573421 + B1_Mus2 SINE Alu 1 147 0 8 1250 226 214 0 0 chr11 87270435 87270478 -34573378 + A-rich Low_complexity Low_complexity 13 55 0 8 1250 21 0 0 0 chr11 87270629 87270650 -34573206 + AT_rich Low_complexity Low_complexity 1 21 0 8 1250 243 0 0 0 chr11 87270691 87270718 -34573138 + (CGTG)n Simple_repeat Simple_repeat 4 30 0 8 1250 249 33 0 0 chr11 87270718 87270747 -34573109 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1250 682 197 16 0 chr11 87270753 87270875 -34572981 - B3 SINE B2 -92 124 1 8 1250 688 279 6 0 chr11 87270923 87271084 -34572772 - RSINE1 SINE B4 -2 163 2 8 1250 3397 35 5 0 chr11 87271137 87271531 -34572325 - MTA_Mm LTR MaLR 0 396 1 8 1250 5595 46 18 9 chr11 87271532 87272316 -34571540 - MTA_Mm-int LTR MaLR -1 1097 307 8 1250 637 325 24 9 chr11 87272306 87272517 -34571339 - B4 SINE B4 -69 223 10 8 1250 592 234 14 42 chr11 87272537 87272680 -34571176 - B1_Mur1 SINE Alu -8 141 3 8 1250 233 279 0 154 chr11 87272573 87272696 -34571160 - MT2B LTR ERVL -345 256 153 8 1250 442 289 98 7 chr11 87272716 87272869 -34570987 - MER21B LTR ERV1 -582 281 115 8 1250 681 13 0 0 chr11 87272900 87272978 -34570878 + (TCCCC)n Simple_repeat Simple_repeat 3 80 0 8 1250 468 0 0 0 chr11 87272978 87273029 -34570827 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1250 523 163 0 0 chr11 87273054 87273140 -34570716 - B1_Mur3 SINE Alu -63 86 1 8 1250 320 245 49 106 chr11 87273140 87273178 -34570678 - MT2B LTR ERVL -446 155 125 8 1250 786 171 0 46 chr11 87273194 87273329 -34570527 - B1_Mur4 SINE Alu 0 150 22 8 1250 4820 40 17 2 chr11 87273329 87273907 -34569949 - LTRIS_Mus LTR ERV1 0 587 1 8 1250 786 171 0 46 chr11 87273907 87273924 -34569932 - B1_Mur4 SINE Alu -129 21 5 8 1250 523 241 38 0 chr11 87274626 87274759 -34569097 + B3A SINE B2 16 153 -45 8 1250 261 0 0 0 chr11 87274780 87274809 -34569047 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1250 697 174 57 21 chr11 87274996 87275137 -34568719 + B1_Mur1 SINE Alu 3 148 -1 8 1250 475 261 0 25 chr11 87275142 87275264 -34568592 + PB1D7 SINE Alu 2 120 0 8 1250 1409 122 9 0 chr11 87275787 87276001 -34567855 + U3 snRNA snRNA 1 216 -1 8 1250 530 202 26 26 chr11 87276243 87276360 -34567496 - PB1D9 SINE Alu -1 119 3 8 1250 1435 34 85 6 chr11 87276440 87276617 -34567239 + B2_Mm1a SINE B2 3 193 0 8 1250 261 309 42 21 chr11 87276882 87276978 -34566878 + B1_Mus2 SINE Alu 1 98 -49 8 1250 237 215 48 48 chr11 87277023 87277106 -34566750 + BC1_Mm scRNA scRNA 17 99 -53 8 1250 1131 48 0 14 chr11 87277109 87277247 -34566609 + B1_Mm SINE Alu 2 138 -9 8 1250 396 0 0 0 chr11 87277247 87277291 -34566565 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 8 1250 250 289 0 0 chr11 87277351 87277403 -34566453 + PB1 SINE Alu 54 105 -22 8 1250 892 65 24 0 chr11 87277514 87277638 -34566218 + B2_Mm2 SINE B2 2 128 -67 8 1250 1552 32 5 11 chr11 87277790 87277978 -34565878 + B2_Mm1t SINE B2 1 187 -6 8 1250 1283 69 46 0 chr11 87277987 87278160 -34565696 + B2_Mm2 SINE B2 1 181 -14 8 1250 462 293 98 0 chr11 87278210 87278343 -34565513 + RSINE1 SINE B4 2 147 -18 8 1250 1105 82 7 0 chr11 87278433 87278579 -34565277 - B1_Mus1 SINE Alu 0 148 2 8 1250 483 271 59 55 chr11 87278608 87278827 -34565029 + L1_Mur3 LINE L1 4065 4284 -1596 8 1250 265 286 109 30 chr11 87278975 87279076 -34564780 + ID_B1 SINE B4 99 207 -17 8 1250 312 314 110 52 chr11 87279107 87279416 -34564440 + MT2A LTR ERVL 1 327 -206 8 1250 1732 148 103 9 chr11 87279484 87279832 -34564024 - ORR1B1 LTR MaLR -13 381 1 8 1250 1069 85 18 18 chr11 87280020 87280187 -34563669 + B2_Mm1a SINE B2 1 167 -26 8 1250 23 0 0 29 chr11 87280188 87280209 -34563647 + AT_rich Low_complexity Low_complexity 1 21 0 8 1250 1207 68 0 0 chr11 87280209 87280355 -34563501 - B1_Mus1 SINE Alu -1 147 2 8 1250 23 0 0 29 chr11 87280355 87280367 -34563489 + AT_rich Low_complexity Low_complexity 1 12 0 8 1250 1201 124 0 42 chr11 87280367 87280560 -34563296 - B2_Mm2 SINE B2 -9 186 2 8 1250 243 88 0 0 chr11 87280579 87280613 -34563243 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1250 420 269 160 24 chr11 87280616 87280829 -34563027 + L1M2 LINE L1 4804 5045 -1098 8 1250 3608 101 160 134 chr11 87281334 87282217 -34561639 - RMER17A2 LTR ERVK 0 906 1 8 1250 1368 86 5 11 chr11 87282555 87282744 -34561112 + B2_Mm1a SINE B2 2 189 -4 8 1250 1670 31 0 0 chr11 87282748 87282940 -34560916 + B2_Mm1t SINE B2 2 193 0 9 1250 761 193 27 7 chr11 87283749 87283895 -34559961 - B1_Mur4 SINE Alu -1 149 1 9 1250 553 200 83 0 chr11 87284057 87284177 -34559679 - B3 SINE B2 -86 130 1 9 1250 1409 122 9 0 chr11 87284869 87285083 -34558773 + U3 snRNA snRNA 1 216 -1 9 1250 4541 31 37 0 chr11 87285196 87285738 -34558118 - L1Md_A LINE L1 0 6582 6021 9 1250 361 264 35 43 chr11 87286280 87286395 -34557461 + B1F2 SINE Alu 16 129 -20 9 1250 403 304 58 39 chr11 87286447 87286601 -34557255 - RSINE1 SINE B4 0 165 9 9 1250 574 192 146 0 chr11 87286656 87286786 -34557070 + B1_Mus2 SINE Alu 1 149 -1 9 1250 317 243 128 55 chr11 87286847 87286956 -34556900 - B3 SINE B2 -66 150 34 9 1250 329 291 9 19 chr11 87287002 87287107 -34556749 - B1F2 SINE Alu 0 149 46 9 1250 270 234 25 25 chr11 87287129 87287208 -34556648 + PB1D10 SINE Alu 10 88 -29 9 1250 460 242 41 8 chr11 87287235 87287356 -34556500 - B3 SINE B2 -5 211 87 9 1250 1137 65 0 0 chr11 87287358 87287496 -34556360 + B1_Mus2 SINE Alu 1 138 -9 9 1250 232 27 26 26 chr11 87287496 87287534 -34556322 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 9 1250 280 247 212 0 chr11 87287575 87287660 -34556196 + PB1D10 SINE Alu 7 109 -8 9 1250 313 302 187 39 chr11 87287674 87287829 -34556027 + B3 SINE B2 2 179 -37 9 1250 430 267 22 0 chr11 87288059 87288194 -34555662 - B1F SINE Alu 0 149 12 9 1250 482 277 21 49 chr11 87288214 87288358 -34555498 - RSINE1 SINE B4 -19 146 7 9 1250 331 293 30 0 chr11 87288373 87288472 -34555384 - PB1D10 SINE Alu -15 102 1 9 1250 348 279 0 0 chr11 87288388 87288474 -34555382 - ID_B1 SINE B4 -59 165 80 9 1250 207 125 0 0 chr11 87288538 87288578 -34555278 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1250 1495 52 0 10 chr11 87288593 87288788 -34555068 - L1Md_F2 LINE L1 -12 6570 6378 9 1250 207 0 0 0 chr11 87288807 87288830 -34555026 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1250 1196 49 0 0 chr11 87288832 87288975 -34554881 - B1_Mus2 SINE Alu -4 143 1 9 1250 30 0 0 0 chr11 87289002 87289032 -34554824 + AT_rich Low_complexity Low_complexity 1 30 0 9 1250 309 254 15 0 chr11 87289135 87289202 -34554654 - B1_Mur3 SINE Alu -81 68 1 9 1250 616 194 139 0 chr11 87289302 87289431 -34554425 - B1_Mur2 SINE Alu -1 148 2 9 1250 26 64 0 0 chr11 87289501 87289548 -34554308 + AT_rich Low_complexity Low_complexity 1 47 0 9 1250 214 191 0 0 chr11 87289965 87290012 -34553844 + B1_Mus2 SINE Alu 91 137 -10 9 1250 233 163 0 20 chr11 87290012 87290062 -34553794 + GA-rich Low_complexity Low_complexity 1 49 0 9 1250 1131 75 0 0 chr11 87290078 87290224 -34553632 - B1_Mus1 SINE Alu -2 146 1 9 1250 1459 70 27 0 chr11 87290415 87290602 -34553254 + B2_Mm2 SINE B2 2 193 -2 9 1250 815 185 20 0 chr11 87290727 87290873 -34552983 - B1_Mur3 SINE Alu 0 149 1 9 1250 239 190 17 0 chr11 87290949 87291007 -34552849 + CT-rich Low_complexity Low_complexity 2 60 0 9 1250 1990 107 9 53 chr11 87291343 87291680 -34552176 - RLTRETN_Mm LTR ERVK 0 322 1 9 1250 8073 136 21 21 chr11 87291680 87293038 -34550818 - MMETn-int LTR ERVK 0 4844 3486 9 1250 23547 58 12 39 chr11 87293072 87293829 -34550027 - MMETn-int LTR ERVK -1703 3141 2396 9 1250 304 44 0 0 chr11 87293829 87293874 -34549982 + L1Md_T LINE L1 6538 6582 0 9 156 23547 58 12 39 chr11 87293874 87296345 -34547511 - MMETn-int LTR ERVK -2449 2395 2 9 1251 1996 107 12 48 chr11 87296346 87296680 -34547176 - RLTRETN_Mm LTR ERVK 0 322 1 9 1251 264 182 0 0 chr11 87296680 87296724 -34547132 - B3A SINE B2 -131 67 24 9 1251 422 266 0 34 chr11 87296767 87296884 -34546972 - PB1D10 SINE Alu -4 113 1 9 1251 897 214 102 0 chr11 87297062 87297258 -34546598 - B3 SINE B2 0 216 1 9 1251 1240 110 37 32 chr11 87297419 87297607 -34546249 - B2_Mm2 SINE B2 -5 190 2 9 1251 275 215 0 58 chr11 87298492 87298561 -34545295 - B4A SINE B4 -13 279 215 9 1251 501 94 0 0 chr11 87298561 87298646 -34545210 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 9 1251 1164 88 0 0 chr11 87298646 87298794 -34545062 - B1_Mus1 SINE Alu 0 148 1 9 1251 330 221 221 37 chr11 87298821 87298957 -34544899 - B3 SINE B2 -28 188 28 9 1251 459 290 56 31 chr11 87299016 87299176 -34544680 - RSINE1 SINE B4 0 165 2 9 1251 398 321 44 15 chr11 87299205 87299341 -34544515 - B4A SINE B4 -127 165 26 9 1251 1605 97 22 45 chr11 87299328 87299685 -34544171 - RLTR45 LTR ERVK -81 401 1 9 1251 3521 61 45 7 chr11 87300007 87300471 -34543385 - RLTR45 LTR ERVK 0 482 1 9 1251 685 248 7 0 chr11 87300564 87300709 -34543147 - B1_Mm SINE Alu 0 147 2 9 1251 270 326 0 0 chr11 87300934 87301020 -34542836 + MIR3 SINE MIR 118 203 -5 9 1251 268 204 5 19 chr11 87301495 87301563 -34542293 - RLTR20D LTR ERVK -12 566 481 9 1251 615 247 52 64 chr11 87301556 87301807 -34542049 - RLTR20D LTR ERVK -320 248 1 9 1251 256 195 16 10 chr11 87301807 87301882 -34541974 - MLT1F LTR MaLR -59 501 427 9 1251 236 189 203 0 chr11 87301942 87302016 -34541840 - MLT1F LTR MaLR -290 258 170 9 1251 504 295 36 0 chr11 87302115 87302227 -34541629 - RSINE1 SINE B4 -12 153 38 9 1251 240 224 34 17 chr11 87302299 87302358 -34541498 - MLT1F LTR MaLR -500 60 1 9 1251 284 274 36 0 chr11 87302412 87302496 -34541360 + U6 snRNA snRNA 21 107 0 9 1251 360 238 176 10 chr11 87302647 87302749 -34541107 - ID_B1 SINE B4 -24 200 82 9 1251 450 218 69 0 chr11 87302749 87302850 -34541006 - B1F1 SINE Alu -33 116 9 9 1251 470 259 37 0 chr11 87302877 87302985 -34540871 - ID_B1 SINE B4 -5 219 108 9 1251 266 406 0 31 chr11 87302982 87303109 -34540747 - B1F1 SINE Alu -25 124 2 9 1251 433 221 94 8 chr11 87303294 87303422 -34540434 - RMER12B LTR ERVK -188 1216 1078 9 1251 4826 98 13 39 chr11 87303550 87304387 -34539469 - RLTR13C2 LTR ERVK 0 1023 1 9 1251 255 316 0 0 chr11 87304387 87304462 -34539394 - RMER12B LTR ERVK -459 945 871 9 1251 915 220 207 79 chr11 87304545 87304708 -34539148 - RMER12 LTR ERVK -794 528 352 9 1251 1308 78 34 0 chr11 87304708 87304887 -34538969 + B2_Mm1t SINE B2 3 187 -6 9 1251 915 220 207 79 chr11 87304887 87304899 -34538957 - RMER12 LTR ERVK -971 351 338 9 1251 1496 42 25 36 chr11 87304899 87305095 -34538761 + B2_Mm2 SINE B2 2 195 0 9 1251 915 220 207 79 chr11 87305095 87305350 -34538506 - RMER12 LTR ERVK -985 337 31 9 1251 1366 34 11 11 chr11 87305350 87305530 -34538326 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 9 1251 1180 44 0 0 chr11 87305534 87305671 -34538185 - B1_Mus1 SINE Alu -11 137 1 9 1251 915 220 207 79 chr11 87305671 87305701 -34538155 - RMER12 LTR ERVK -1292 30 1 9 1251 233 323 20 0 chr11 87305733 87305832 -34538024 - PB1D7 SINE Alu -16 104 4 9 1251 180 77 0 0 chr11 87306386 87306412 -34537444 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 1251 230 273 127 25 chr11 87306719 87306733 -34537123 - ID_B1 SINE B4 -58 166 85 9 1251 248 200 200 0 chr11 87306733 87306793 -34537063 - PB1D7 SINE Alu -45 75 4 9 1251 1710 159 66 23 chr11 87307533 87307881 -34535975 - ORR1D1 LTR MaLR -11 363 1 9 1251 294 270 44 115 chr11 87308071 87308184 -34535672 + PB1D10 SINE Alu 11 115 -2 9 1251 376 274 86 26 chr11 87308164 87308183 -34535673 + B4 SINE B4 70 192 -100 9 1251 551 155 62 0 chr11 87308183 87308280 -34535576 + B1_Mur2 SINE Alu 1 103 -46 9 1251 1193 41 7 20 chr11 87308758 87308906 -34534950 - B1_Mm SINE Alu 0 147 2 9 1251 241 250 44 0 chr11 87308906 87308974 -34534882 - MER20 DNA MER1_type -38 181 111 9 1251 236 236 0 18 chr11 87310476 87310532 -34533324 - MTC LTR MaLR -351 70 16 9 1251 1472 38 21 26 chr11 87310590 87310622 -34533234 - B2_Mm1a SINE B2 -1 192 161 9 1251 186 43 0 0 chr11 87310622 87310645 -34533211 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 1251 1472 38 21 26 chr11 87310645 87310804 -34533052 - B2_Mm1a SINE B2 -33 160 2 9 1251 836 173 201 0 chr11 87310825 87311004 -34532852 - B3 SINE B2 0 216 2 9 1251 577 235 51 7 chr11 87311084 87311221 -34532635 - ID_B1 SINE B4 -3 221 79 9 1251 243 0 0 0 chr11 87311663 87311690 -34532166 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 9 1251 527 217 43 0 chr11 87311700 87311815 -34532041 - RSINE1 SINE B4 -40 125 6 9 1251 243 0 0 0 chr11 87311876 87311903 -34531953 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1251 471 277 12 92 chr11 87311938 87312101 -34531755 - RSINE1 SINE B4 -12 153 4 9 1251 429 254 8 34 chr11 87312115 87312233 -34531623 - PB1D10 SINE Alu -1 116 2 9 1251 184 191 43 0 chr11 87312851 87312898 -34530958 + MIRc SINE MIR 102 150 -118 9 1251 447 19 0 0 chr11 87313360 87313412 -34530444 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1251 186 43 0 0 chr11 87313420 87313443 -34530413 + (GGGAGA)n Simple_repeat Simple_repeat 3 25 0 9 1251 454 248 73 0 chr11 87313443 87313552 -34530304 - RSINE1 SINE B4 -46 119 3 9 1251 243 218 0 0 chr11 87313556 87313611 -34530245 + C-rich Low_complexity Low_complexity 3 57 0 9 1251 281 287 77 44 chr11 87313620 87313711 -34530145 - PB1D10 SINE Alu -23 97 4 9 1251 916 116 0 58 chr11 87313867 87314023 -34529833 - B1_Mus2 SINE Alu 0 147 1 9 1251 369 271 140 5 chr11 87314105 87314298 -34529558 - MLT1J2 LTR MaLR -183 265 47 9 1251 472 244 40 40 chr11 87315110 87315234 -34528622 + RSINE1 SINE B4 3 126 -39 9 1251 766 170 15 7 chr11 87315250 87315386 -34528470 - B1_Mur4 SINE Alu -13 137 1 9 1251 432 0 0 0 chr11 87315404 87315452 -34528404 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1251 456 233 0 19 chr11 87315489 87315594 -34528262 - ID_B1 SINE B4 -20 204 102 9 1251 729 271 33 11 chr11 87315735 87315918 -34527938 - B3A SINE B2 -10 188 2 9 1251 459 329 7 0 chr11 87315936 87316076 -34527780 - B1F2 SINE Alu 0 149 9 9 1251 255 254 51 0 chr11 87316120 87316179 -34527677 - B4A SINE B4 -4 288 227 1 1251 1246 32 0 0 chr11 87316880 87317035 -34526821 + B2_Mm2 SINE B2 7 161 -34 1 1251 225 0 0 0 chr11 87317035 87317060 -34526796 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1251 191 61 30 0 chr11 87317651 87317684 -34526172 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1251 872 51 0 0 chr11 87317688 87317806 -34526050 - B1_Mus2 SINE Alu 0 147 30 1 1251 1383 81 38 0 chr11 87317808 87317994 -34525862 - B2_Mm2 SINE B2 -2 193 1 1 1251 1037 217 0 0 chr11 87317996 87318199 -34525657 - MTD LTR MaLR -212 207 5 1 1251 24 32 0 0 chr11 87319002 87319033 -34524823 + AT_rich Low_complexity Low_complexity 1 31 0 1 1251 237 173 0 0 chr11 87319152 87319187 -34524669 + T-rich Low_complexity Low_complexity 18 52 0 1 1251 1187 48 0 7 chr11 87319187 87319335 -34524521 - B1_Mus2 SINE Alu 0 147 1 1 1251 237 173 0 0 chr11 87319335 87319351 -34524505 + T-rich Low_complexity Low_complexity 2 17 0 1 1251 1166 56 0 0 chr11 87319364 87319508 -34524348 + B1_Mus2 SINE Alu 1 144 -3 1 1251 191 0 0 94 chr11 87319510 87319542 -34524314 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1251 1384 67 17 6 chr11 87319542 87319721 -34524135 - B2_Mm2 SINE B2 -14 181 1 1 1251 521 184 110 0 chr11 87320009 87320118 -34523738 - B1_Mur1 SINE Alu 0 149 29 1 1251 1199 221 108 18 chr11 87320119 87320460 -34523396 - ORR1D1 LTR MaLR -1 373 2 1 1251 1055 190 43 24 chr11 87320524 87320734 -34523122 - B3 SINE B2 -2 214 1 1 1251 303 235 0 0 chr11 87320816 87320884 -34522972 - ID_B1 SINE B4 0 224 157 1 1251 1479 73 0 30 chr11 87321794 87321992 -34521864 - B2_Mm2 SINE B2 0 195 4 1 1251 320 169 15 30 chr11 87322286 87322353 -34521503 + B1_Mur4 SINE Alu 34 99 -51 1 1251 542 311 0 0 chr11 87322339 87322487 -34521369 + RSINE1 SINE B4 18 165 0 1 1251 32 26 0 0 chr11 87322496 87322535 -34521321 + AT_rich Low_complexity Low_complexity 1 39 0 1 1251 616 49 0 0 chr11 87324178 87324259 -34519597 + RLTR13A2 LTR ERVK 878 958 0 1 1251 1010 189 5 0 chr11 87324431 87324621 -34519235 - B3 SINE B2 0 216 26 1 1251 203 175 25 0 chr11 87324670 87324710 -34519146 + C-rich Low_complexity Low_complexity 6 46 0 1 1251 255 220 0 0 chr11 87324711 87324761 -34519095 - RMER15 LTR ERVL -104 471 422 1 1251 284 276 44 33 chr11 87324771 87324861 -34518995 - RMER15 LTR ERVL -114 461 371 1 1251 257 286 40 10 chr11 87325271 87325370 -34518486 + B1F2 SINE Alu 40 141 -8 1 1251 713 252 6 6 chr11 87325867 87326027 -34517829 - RSINE1 SINE B4 -1 164 5 1 1251 899 210 28 47 chr11 87326041 87326256 -34517600 - B3 SINE B2 -5 211 1 1 1251 436 306 10 0 chr11 87326295 87326393 -34517463 + PB1 SINE Alu 1 99 -28 1 1251 229 320 82 0 chr11 87326441 87326538 -34517318 - MIRc SINE MIR -117 151 47 1 1251 340 217 20 61 chr11 87326985 87327083 -34516773 + PB1D9 SINE Alu 21 114 -6 1 1251 257 347 20 34 chr11 87327209 87327358 -34516498 - B1F SINE Alu -2 147 1 1 1251 710 252 0 31 chr11 87328695 87328855 -34515001 + B3A SINE B2 3 157 -41 1 1251 663 296 12 85 chr11 87328910 87329157 -34514699 + B4A SINE B4 1 229 -63 1 1251 653 272 47 0 chr11 87329160 87329351 -34514505 + B3 SINE B2 2 201 -15 1 1251 1106 56 14 14 chr11 87329383 87329529 -34514327 - B1_Mm SINE Alu 0 147 2 1 1251 500 267 0 56 chr11 87329787 87329930 -34513926 - B1F1 SINE Alu -6 143 9 1 1251 30 69 0 0 chr11 87330507 87330565 -34513291 + AT_rich Low_complexity Low_complexity 1 58 0 1 1251 1236 47 0 7 chr11 87330615 87330764 -34513092 + B1_Mus1 SINE Alu 1 148 0 1 1251 746 139 0 24 chr11 87330791 87330916 -34512940 - B2_Mm2 SINE B2 -71 124 3 1 1251 661 194 96 7 chr11 87330919 87331054 -34512802 - B1_Mur1 SINE Alu -2 147 1 1 1251 24 0 0 0 chr11 87331056 87331080 -34512776 + AT_rich Low_complexity Low_complexity 1 24 0 1 1251 556 217 187 29 chr11 87331083 87331254 -34512602 - B3 SINE B2 -10 206 9 1 1251 441 210 150 8 chr11 87331311 87331431 -34512425 + B1F2 SINE Alu 12 148 -1 1 1251 536 174 170 22 chr11 87331457 87331592 -34512264 + B3 SINE B2 2 156 -60 1 1251 280 136 23 0 chr11 87331627 87331671 -34512185 - MurSatRep1 Unknown Unknown -1861 276 232 1 1251 204 40 0 0 chr11 87331810 87331835 -34512021 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1251 447 238 8 90 chr11 87331855 87331879 -34511977 + MT2B LTR ERVL 142 154 -447 1 1251 891 148 7 0 chr11 87331879 87332021 -34511835 + B1_Mus2 SINE Alu 3 145 -2 1 1251 513 209 19 0 chr11 87332321 87332426 -34511430 - PB1D9 SINE Alu -9 111 5 1 1251 306 115 48 0 chr11 87333281 87333349 -34510507 - PB1D10 SINE Alu 0 117 57 1 1251 793 296 41 3 chr11 87334999 87335267 -34508589 + B4A SINE B4 7 282 -10 1 1251 321 26 0 0 chr11 87335293 87335331 -34508525 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1251 642 254 7 14 chr11 87335340 87335480 -34508376 + ID_B1 SINE B4 80 218 -6 1 1251 255 60 60 0 chr11 87335520 87335570 -34508286 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 1 1251 817 115 108 0 chr11 87335602 87335732 -34508124 + B1_Mus1 SINE Alu 3 146 -2 1 1251 424 300 6 53 chr11 87336386 87336555 -34507301 - RSINE1 SINE B4 -2 163 3 1 1251 764 194 40 79 chr11 87337481 87337498 -34506358 - B3 SINE B2 -19 197 186 1 1251 1843 140 97 33 chr11 87337498 87337859 -34505997 - ORR1C2 LTR MaLR 0 384 1 1 1251 764 194 40 79 chr11 87337859 87338043 -34505813 - B3 SINE B2 -31 185 4 1 1251 760 216 224 135 chr11 87338127 87338475 -34505381 + MTE2b LTR MaLR 1 379 0 1 1251 243 216 147 74 chr11 87338541 87338636 -34505220 - RSINE1 SINE B4 -43 122 21 1 1251 22 35 0 0 chr11 87338636 87338665 -34505191 + AT_rich Low_complexity Low_complexity 1 29 0 1 1251 918 246 33 0 chr11 87338743 87338958 -34504898 + ID_B1 SINE B4 2 223 -1 1 1251 380 20 20 0 chr11 87339318 87339367 -34504489 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1251 794 301 4 9 chr11 87339529 87339754 -34504102 - ID_B1 SINE B4 0 224 1 1 1251 229 291 63 0 chr11 87339761 87339840 -34504016 - B4 SINE B4 -206 86 3 1 1251 426 255 0 20 chr11 87340086 87340186 -34503670 + PB1D10 SINE Alu 19 116 -1 1 1251 905 163 7 0 chr11 87340237 87340384 -34503472 + B1_Mus1 SINE Alu 1 148 0 1 1251 912 224 133 67 chr11 87340387 87340703 -34503153 + Lx5 LINE L1 6714 7050 0 1 1251 328 309 171 0 chr11 87340717 87340869 -34502987 - L1ME3A LINE L1 -36 6137 5960 1 1251 775 134 53 41 chr11 87341056 87341227 -34502629 - RMER1C Other Other -40 1302 1130 1 1251 201 271 0 0 chr11 87341512 87341560 -34502296 - MIR3 SINE MIR -37 171 124 1 1251 814 170 185 11 chr11 87341605 87341789 -34502067 + B3 SINE B2 1 216 0 1 1251 206 378 0 0 chr11 87342001 87342075 -34501781 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1251 213 175 0 0 chr11 87342139 87342179 -34501677 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1 1251 1087 53 227 0 chr11 87342179 87342329 -34501527 - B2_Mm2 SINE B2 -11 184 1 1 1251 530 249 70 12 chr11 87342630 87342840 -34501016 - L1MA4 LINE L1 -362 5938 5716 1 1251 1192 107 56 6 chr11 87343040 87343219 -34500637 + B2_Mm2 SINE B2 2 189 -6 1 1251 1132 68 0 33 chr11 87343225 87343376 -34500480 + B1_Mus2 SINE Alu 2 147 0 1 1251 348 43 0 0 chr11 87343459 87343505 -34500351 + (TATG)n Simple_repeat Simple_repeat 1 46 0 1 1251 613 241 14 29 chr11 87343514 87343653 -34500203 - RSINE1 SINE B4 -28 137 1 1 1251 356 311 0 28 chr11 87343685 87343791 -34500065 - PB1D10 SINE Alu -14 103 1 1 1251 1093 231 18 32 chr11 87343970 87344248 -34499608 + B4 SINE B4 1 274 -18 1 1251 243 259 17 0 chr11 87344352 87344410 -34499446 + ID4_ SINE ID 22 80 -3 1 1251 228 276 51 17 chr11 87345539 87345598 -34498258 - RSINE1 SINE B4 -16 149 89 1 1251 809 101 17 0 chr11 87345702 87345821 -34498035 - B1_Mur2 SINE Alu -6 143 23 1 1251 447 202 235 9 chr11 87346207 87346322 -34497534 + B1_Mur2 SINE Alu 1 141 -8 1 1251 273 269 13 113 chr11 87346339 87346386 -34497470 + MT2B2 LTR ERVL 122 153 -431 1 1251 723 188 8 0 chr11 87346386 87346514 -34497342 + B1_Mur4 SINE Alu 1 129 -21 1 1251 187 392 41 0 chr11 87346857 87346954 -34496902 - MIRc SINE MIR -153 115 15 1 1251 1195 48 0 7 chr11 87347179 87347325 -34496531 + B1_Mus2 SINE Alu 3 147 0 1 1251 417 139 139 0 chr11 87347327 87347399 -34496457 + B1_Mus1 SINE Alu 1 82 -66 1 1251 21 0 0 0 chr11 87347400 87347421 -34496435 + AT_rich Low_complexity Low_complexity 1 21 0 1 1251 381 302 42 28 chr11 87347441 87347584 -34496272 - RSINE1 SINE B4 -19 146 2 1 1251 227 296 12 12 chr11 87347804 87347886 -34495970 - ID2 SINE ID 0 83 2 1 1251 21 0 0 0 chr11 87347996 87348017 -34495839 + AT_rich Low_complexity Low_complexity 1 21 0 1 1251 276 192 21 0 chr11 87348060 87348120 -34495736 - B1F SINE Alu -66 82 18 1 1251 216 186 0 0 chr11 87348173 87348232 -34495624 + CT-rich Low_complexity Low_complexity 2 60 0 1 1251 512 220 275 18 chr11 87348270 87348437 -34495419 - B3 SINE B2 -5 211 2 1 1251 499 233 34 8 chr11 87348475 87348592 -34495264 - PB1D9 SINE Alu 0 120 1 1 1251 308 297 110 0 chr11 87348681 87348772 -34495084 + PB1D10 SINE Alu 1 101 -48 1 1251 474 303 28 0 chr11 87348865 87349010 -34494846 - B1F1 SINE Alu 0 149 1 1 1251 21 0 0 0 chr11 87349895 87349916 -34493940 + AT_rich Low_complexity Low_complexity 1 21 0 1 1251 264 77 0 0 chr11 87349983 87350022 -34493834 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1251 959 121 0 21 chr11 87350747 87350891 -34492965 + B1_Mus1 SINE Alu 2 142 -6 1 1251 1250 233 73 31 chr11 87350927 87351088 -34492768 - MTD LTR MaLR -4 415 241 1 1251 1625 205 65 14 chr11 87351088 87351440 -34492416 - ORR1D1 LTR MaLR 0 374 5 1 1251 1250 233 73 31 chr11 87351440 87351633 -34492223 - MTD LTR MaLR -179 240 46 1 1251 212 176 0 0 chr11 87352725 87352759 -34491097 + B1_Mus1 SINE Alu 29 62 -86 1 1251 405 240 48 0 chr11 87352987 87353091 -34490765 - B1F SINE Alu 0 149 41 1 1251 1174 88 0 0 chr11 87353141 87353289 -34490567 + B1_Mus1 SINE Alu 1 148 0 1 1251 195 42 0 0 chr11 87353289 87353313 -34490543 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1251 270 0 0 0 chr11 87353652 87353682 -34490174 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1251 1408 134 93 77 chr11 87353777 87354100 -34489756 - ORR1B1 LTR MaLR -27 367 40 1 1251 618 294 51 0 chr11 87354397 87354594 -34489262 + B3 SINE B2 1 207 -9 1 1251 1207 35 7 0 chr11 87354797 87354942 -34488914 + B1_Mus1 SINE Alu 1 146 -2 1 1251 459 0 0 0 chr11 87354942 87354993 -34488863 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1251 252 0 0 0 chr11 87355090 87355118 -34488738 + (CAG)n Simple_repeat Simple_repeat 2 29 0 1 1251 453 276 26 8 chr11 87355133 87355250 -34488606 - PB1D9 SINE Alu 0 120 2 1 1251 369 0 0 0 chr11 87355276 87355317 -34488539 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1251 396 208 37 65 chr11 87355433 87355541 -34488315 - ID_B1 SINE B4 -2 222 118 1 1251 640 250 28 14 chr11 87355565 87355707 -34488149 - B1F2 SINE Alu 0 149 6 1 1251 254 302 104 35 chr11 87356108 87356252 -34487604 + MIRb SINE MIR 8 161 -107 1 1251 362 289 9 19 chr11 87357175 87357281 -34486575 - RMER15 LTR ERVL -108 467 363 1 1251 247 286 0 0 chr11 87357285 87357348 -34486508 - Lx8 LINE L1 -256 7217 7155 1 1251 809 145 0 14 chr11 87357492 87357639 -34486217 + CT-rich Low_complexity Low_complexity 3 147 0 1 1251 352 172 0 0 chr11 87357639 87357703 -34486153 - B1_Mur2 SINE Alu 0 149 86 1 1251 252 227 0 15 chr11 87357737 87357804 -34486052 - L1M1 LINE L1 -422 5881 5816 1 1251 401 0 20 0 chr11 87357810 87357859 -34485997 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1251 499 298 25 6 chr11 87357870 87358029 -34485827 - RSINE1 SINE B4 -1 164 3 1 1251 424 208 39 29 chr11 87358119 87358183 -34485673 - BGLII_B LTR ERVK 0 441 376 1 1251 2258 124 24 3 chr11 87358183 87358522 -34485334 - ORR1A1 LTR MaLR 0 346 1 1 1251 424 208 39 29 chr11 87358522 87358561 -34485295 - BGLII_B LTR ERVK -66 375 337 1 1251 576 126 31 10 chr11 87358551 87358647 -34485209 - BGLII_B LTR ERVK -343 98 1 1 1251 260 353 0 0 chr11 87358647 87358714 -34485142 - B1F1 SINE Alu -82 67 1 1 1251 359 348 0 0 chr11 87358809 87358950 -34484906 + (TG)n Simple_repeat Simple_repeat 2 142 0 1 1251 370 228 13 0 chr11 87358997 87359076 -34484780 - B3A SINE B2 -118 80 1 1 1251 845 209 22 6 chr11 87359077 87359255 -34484601 - L1M3 LINE L1 -516 5667 5487 1 1251 1676 36 0 0 chr11 87359321 87359514 -34484342 - B2_Mm1a SINE B2 0 193 1 1 1251 901 259 15 0 chr11 87359532 87359546 -34484310 - B3 SINE B2 -6 210 194 1 1251 342 0 0 0 chr11 87359546 87359584 -34484272 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1251 901 259 15 0 chr11 87359584 87359766 -34484090 - B3 SINE B2 -23 193 12 1 1251 1212 36 0 0 chr11 87359813 87359953 -34483903 + B1_Mus1 SINE Alu 2 141 -7 1 1251 1858 136 82 6 chr11 87359985 87360325 -34483531 + ORR1C1 LTR MaLR 13 378 0 1 1251 517 150 403 7 chr11 87360379 87360533 -34483323 + B3 SINE B2 1 215 -1 1 1251 1155 37 0 0 chr11 87360555 87360690 -34483166 + B1_Mus2 SINE Alu 1 135 -12 1 1251 243 0 0 0 chr11 87360693 87360720 -34483136 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1251 260 219 47 0 chr11 87361806 87361870 -34481986 + PB1D10 SINE Alu 51 117 0 1 1251 441 288 216 22 chr11 87361934 87362115 -34481741 + ID_B1 SINE B4 3 218 -6 1 1251 435 236 91 0 chr11 87362174 87362284 -34481572 - RSINE1 SINE B4 -40 125 6 1 1251 318 306 93 12 chr11 87362281 87362443 -34481413 - B4A SINE B4 -115 177 3 1 1251 497 319 128 68 chr11 87363311 87363489 -34480367 + L3 LINE CR1 3537 3705 -784 1 1251 278 256 73 57 chr11 87363489 87363613 -34480243 + PB1 SINE Alu 1 126 -1 1 1251 497 319 128 68 chr11 87363613 87364052 -34479804 + L3 LINE CR1 3706 4191 -298 1 1251 204 253 112 22 chr11 87364601 87364690 -34479166 + MIR SINE MIR 110 206 -56 1 1251 796 172 13 33 chr11 87364698 87364848 -34479008 + B1_Mur1 SINE Alu 2 148 -1 1 1251 4696 80 24 15 chr11 87365386 87366057 -34477799 - L1_Mus3 LINE L1 -2 6636 5960 1 1251 5198 111 24 14 chr11 87366057 87366815 -34477041 - Lx2 LINE L1 -64 6933 6169 1 1251 310 218 69 32 chr11 87366815 87366911 -34476945 - B1F SINE Alu -19 101 1 1 1251 225 167 0 0 chr11 87366874 87366916 -34476940 - B4A SINE B4 -170 122 81 1 1251 327 210 84 24 chr11 87367013 87367079 -34476777 + PB1D9 SINE Alu 1 71 -49 1 1251 357 264 21 168 chr11 87367079 87367179 -34476677 + RSINE1 SINE B4 1 95 -70 1 1251 1235 48 0 0 chr11 87367179 87367326 -34476530 + B1_Mm SINE Alu 1 147 0 1 1251 357 264 21 168 chr11 87367326 87367416 -34476440 + RSINE1 SINE B4 96 163 -2 1 1251 277 335 74 70 chr11 87367855 87368099 -34475757 + LTR33 LTR ERVL 271 515 0 1 1251 443 211 32 0 chr11 87369893 87369988 -34473868 + PB1D7 SINE Alu 22 119 -1 1 1251 461 304 29 29 chr11 87369994 87370133 -34473723 + RSINE1 SINE B4 2 140 -25 1 1251 24 0 0 0 chr11 87370133 87370157 -34473699 + AT_rich Low_complexity Low_complexity 1 24 0 1 1251 693 194 7 7 chr11 87370392 87370527 -34473329 + B1_Mur2 SINE Alu 2 136 -13 1 1251 480 318 33 22 chr11 87370544 87370724 -34473132 - B4A SINE B4 -2 290 109 1 1251 250 288 50 0 chr11 87370880 87370960 -34472896 + B1F SINE Alu 37 120 -29 1 1251 416 250 193 64 chr11 87370974 87371145 -34472711 + B3A SINE B2 3 195 -3 1 1251 654 262 0 14 chr11 87371150 87371293 -34472563 + B1_Mur2 SINE Alu 3 143 -6 1 1251 329 186 34 0 chr11 87371335 87371394 -34472462 + ID4_ SINE ID 20 80 -3 1 1251 291 260 27 0 chr11 87371394 87371406 -34472450 + ID_B1 SINE B4 21 93 -131 1 1251 7760 31 0 0 chr11 87371460 87372353 -34471503 - L1Md_A LINE L1 0 6582 5690 1 1251 368 273 107 64 chr11 87372363 87372771 -34471085 + RLTR11A2 LTR ERVK 1 462 -65 1 1251 965 84 0 27 chr11 87373016 87373163 -34470693 - B1_Mus2 SINE Alu 0 147 5 1 1251 995 189 246 0 chr11 87373188 87373489 -34470367 + ORR1C2 LTR MaLR 3 377 -7 1 1251 1005 82 75 0 chr11 87373756 87373890 -34469966 - B1_Mus1 SINE Alu -4 144 1 1 1251 471 202 27 4 chr11 87373939 87374067 -34469789 + B1F SINE Alu 1 132 -17 1 1251 305 227 149 5 chr11 87374186 87374271 -34469585 - B1F2 SINE Alu -27 93 1 1 1251 575 205 96 39 chr11 87374450 87374628 -34469228 + B2_Mm2 SINE B2 1 188 -7 1 1251 247 349 58 49 chr11 87374642 87374865 -34468991 - L2a LINE L2 -253 3173 2949 1 1251 424 279 54 8 chr11 87375082 87375212 -34468644 - ID_B1 SINE B4 -8 216 81 1 1251 692 286 150 4 chr11 87375315 87375568 -34468288 - B4A SINE B4 -2 290 1 1 1251 515 16 16 0 chr11 87375821 87375885 -34467971 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1251 589 160 71 8 chr11 87375890 87376016 -34467840 + B1_Mur2 SINE Alu 13 146 -3 1 1251 436 296 27 14 chr11 87376046 87376193 -34467663 - RSINE1 SINE B4 -15 150 2 1 1251 1410 158 38 11 chr11 87376320 87376583 -34467273 - RLTR14 LTR ERV1 0 382 113 1 1251 399 281 130 0 chr11 87376798 87376944 -34466912 + RSINE1 SINE B4 1 165 0 1 1251 849 228 39 10 chr11 87377011 87377215 -34466641 + B3 SINE B2 1 210 -6 1 1251 192 77 0 0 chr11 87377313 87377339 -34466517 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1251 1177 85 0 6 chr11 87377410 87377576 -34466280 + B2_Mm2 SINE B2 2 166 -29 1 1251 955 149 13 7 chr11 87377629 87377778 -34466078 + B1_Mur4 SINE Alu 1 150 0 1 1251 841 172 69 6 chr11 87378193 87378368 -34465488 + B2_Mm2 SINE B2 1 186 -9 1 1251 308 194 0 16 chr11 87378411 87378474 -34465382 + PB1D10 SINE Alu 52 113 -4 1 1251 752 113 16 16 chr11 87378626 87378741 -34465115 + B1_Mur4 SINE Alu 2 118 -32 1 1251 189 0 0 0 chr11 87378741 87378762 -34465094 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 1 1251 347 305 38 9 chr11 87378814 87378920 -34464936 + PB1D10 SINE Alu 3 111 -6 1 1251 547 292 0 8 chr11 87378924 87379055 -34464801 + B3A SINE B2 1 130 -68 1 1251 965 126 0 7 chr11 87379087 87379223 -34464633 + B1_Mus2 SINE Alu 1 135 -12 1 1251 631 294 69 25 chr11 87379282 87379484 -34464372 + ID_B1 SINE B4 8 218 -6 1 1251 202 162 27 0 chr11 87379819 87379856 -34464000 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1 1251 723 182 40 40 chr11 87382782 87382931 -34460925 - B1_Mur1 SINE Alu 0 149 1 1 1251 959 145 168 0 chr11 87382944 87383123 -34460733 - B3 SINE B2 -7 209 1 1 1251 192 97 0 0 chr11 87384679 87384710 -34459146 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1251 973 128 37 0 chr11 87386257 87386421 -34457435 - URR1B DNA MER1_type 0 225 56 1 1251 679 269 33 33 chr11 87386964 87387179 -34456677 - B3 SINE B2 0 216 2 1 1251 247 296 24 16 chr11 87387881 87388002 -34455854 - MIRb SINE MIR -31 231 118 1 1251 24 0 0 0 chr11 87388436 87388460 -34455396 + GC_rich Low_complexity Low_complexity 1 24 0 1 1251 207 0 0 0 chr11 87389611 87389634 -34454222 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 1 1251 942 233 107 31 chr11 87390170 87390431 -34453425 - B4 SINE B4 -10 282 2 1 1251 370 259 41 49 chr11 87390863 87390985 -34452871 - MIR3 SINE MIR -14 194 74 1 1251 226 297 58 19 chr11 87395146 87395249 -34448607 - MER94 DNA AcHobo -8 126 20 1 1251 661 53 21 0 chr11 87396397 87396491 -34447365 + (TCC)n Simple_repeat Simple_repeat 2 97 0 1 1251 775 158 79 0 chr11 87398152 87398279 -34445577 + B1_Mur3 SINE Alu 2 138 -11 1 1251 251 252 55 124 chr11 87398892 87398942 -34444914 - RLTR25B LTR ERVK -439 589 455 1 1251 437 204 42 21 chr11 87398942 87399037 -34444819 - B1_Mur1 SINE Alu 0 149 53 1 1251 384 328 70 32 chr11 87398998 87399056 -34444800 - B4A SINE B4 -8 284 92 1 1251 492 291 78 8 chr11 87399056 87399184 -34444672 - B1F1 SINE Alu -6 143 7 1 1251 234 222 147 92 chr11 87399418 87399527 -34444329 + PB1D7 SINE Alu 6 120 0 1 1251 416 357 58 23 chr11 87399996 87400049 -34443807 - MER45A DNA Tip100 0 178 118 1 1251 904 79 158 0 chr11 87400049 87400176 -34443680 + B1_Mus1 SINE Alu 2 148 0 1 1251 416 357 58 23 chr11 87400176 87400294 -34443562 - MER45A DNA Tip100 -61 117 1 1 1251 279 190 0 0 chr11 87401115 87401173 -34442683 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1251 22 0 0 0 chr11 87401482 87401504 -34442352 + AT_rich Low_complexity Low_complexity 1 22 0 1 1251 279 316 88 7 chr11 87401522 87401659 -34442197 - RSINE1 SINE B4 -13 152 5 1 1251 180 0 0 0 chr11 87407072 87407092 -34436764 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1251 531 296 0 36 chr11 87407102 87407239 -34436617 - B1F1 SINE Alu -3 146 15 1 1251 481 254 182 57 chr11 87407104 87407296 -34436560 - ID_B1 SINE B4 -5 219 4 1 1251 385 241 110 9 chr11 87407494 87407603 -34436253 + B1_Mur2 SINE Alu 5 124 -25 1 1251 189 0 0 0 chr11 87408959 87408980 -34434876 + (TGG)n Simple_repeat Simple_repeat 2 22 0 1 1251 180 0 0 0 chr11 87409969 87409989 -34433867 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1251 838 134 8 0 chr11 87411398 87411525 -34432331 - B1_Mus1 SINE Alu -20 128 1 1 1251 274 157 391 18 chr11 87411527 87411637 -34432219 - B2_Mm1t SINE B2 0 195 45 1 1251 1138 95 71 6 chr11 87411689 87411858 -34431998 - B2_Mm2 SINE B2 -14 181 2 1 1251 724 239 126 11 chr11 87411865 87412047 -34431809 - B3 SINE B2 0 216 14 1 1251 254 281 252 0 chr11 87412066 87412201 -34431655 + MIRb SINE MIR 26 194 -74 1 1251 556 314 152 40 chr11 87412757 87413408 -34430448 - L2a LINE L2 -20 3406 2685 1 1251 738 191 115 22 chr11 87414769 87414951 -34428905 + B3 SINE B2 2 200 -16 1 1251 237 175 30 60 chr11 87414952 87415019 -34428837 + B3 SINE B2 152 216 0 1 1251 528 45 0 0 chr11 87415106 87415173 -34428683 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1251 698 182 16 16 chr11 87415444 87415567 -34428289 + B1_Mus2 SINE Alu 1 123 -24 1 1251 185 279 0 68 chr11 87415708 87415781 -34428075 + MIRc SINE MIR 201 268 0 1 1251 254 282 86 106 chr11 87416446 87416623 -34427233 + MIRb SINE MIR 2 179 -89 1 1251 835 192 12 36 chr11 87418772 87418939 -34424917 - RSINE1 SINE B4 0 165 3 1 1251 1223 68 0 0 chr11 87419348 87419495 -34424361 + B1_Mus1 SINE Alu 2 148 0 1 1251 361 270 19 74 chr11 87420173 87420281 -34423575 - PB1D10 SINE Alu -3 114 13 1 1251 486 259 36 0 chr11 87420573 87420685 -34423171 - PB1D10 SINE Alu 0 117 2 1 1251 1049 58 35 28 chr11 87420820 87420963 -34422893 - B1_Mus1 SINE Alu 0 148 5 1 1251 201 74 0 0 chr11 87421280 87421307 -34422549 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1251 562 214 62 38 chr11 87421316 87421473 -34422383 - B3 SINE B2 0 216 4 1 1251 240 233 122 14 chr11 87422344 87422418 -34421438 + ID4_ SINE ID 2 83 0 1 1251 195 245 232 10 chr11 87422600 87422699 -34421157 - L2c LINE L2 -1 3386 3266 1 1251 289 311 46 28 chr11 87422694 87422803 -34421053 - MIR SINE MIR -50 212 102 1 1251 911 254 20 93 chr11 87422834 87423081 -34420775 + B4A SINE B4 52 280 -12 1 1251 26 30 0 0 chr11 87423104 87423137 -34420719 + AT_rich Low_complexity Low_complexity 1 33 0 1 1251 1451 67 17 0 chr11 87423147 87423327 -34420529 + B2_Mm2 SINE B2 1 183 -12 1 1251 216 0 0 0 chr11 87423327 87423351 -34420505 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1251 1181 61 0 20 chr11 87423354 87423505 -34420351 + B1_Mus1 SINE Alu 1 148 0 1 1251 239 305 17 0 chr11 87424067 87424126 -34419730 + BC1_Mm scRNA scRNA 2 61 -91 1 1251 365 188 31 0 chr11 87424073 87424137 -34419719 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 1 1252 250 358 6 33 chr11 87425960 87426075 -34417781 - L2c LINE L2 -233 3154 3042 1 1252 495 181 158 45 chr11 87426273 87426406 -34417450 - B1_Mur3 SINE Alu -1 148 1 1 1252 695 272 51 30 chr11 87426645 87426842 -34417014 - MER58A DNA MER1_type -18 206 6 1 1252 27 29 0 0 chr11 87430930 87430964 -34412892 + GC_rich Low_complexity Low_complexity 1 34 0 1 1252 185 108 27 0 chr11 87430972 87431009 -34412847 + (CGG)n Simple_repeat Simple_repeat 3 40 0 1 1252 41 36 0 0 chr11 87431100 87431155 -34412701 + GC_rich Low_complexity Low_complexity 1 55 0 1 1252 586 226 103 62 chr11 87432852 87432998 -34410858 - RSINE1 SINE B4 -2 163 12 1 1252 186 43 0 0 chr11 87433325 87433348 -34410508 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1252 466 278 9 18 chr11 87433362 87433472 -34410384 - PB1D10 SINE Alu -8 109 1 1 1252 941 219 155 7 chr11 87434017 87434288 -34409568 - Lx8 LINE L1 -2 7471 7161 1 1252 21 57 0 0 chr11 87434926 87434961 -34408895 + AT_rich Low_complexity Low_complexity 1 35 0 1 1252 483 257 20 41 chr11 87435500 87435646 -34408210 + B1F1 SINE Alu 1 143 -6 1 1252 327 305 104 21 chr11 87435679 87435823 -34408033 + RSINE1 SINE B4 2 157 -8 1 1252 482 236 131 35 chr11 87436752 87436897 -34406959 + B3A SINE B2 13 171 -27 1 1252 1439 78 5 5 chr11 87437131 87437323 -34406533 - B2_Mm1t SINE B2 -1 192 1 1 1252 813 193 33 0 chr11 87437755 87437905 -34405951 + RMER30 DNA MER1_type 47 201 -1 1 1252 1260 48 0 0 chr11 87438360 87438506 -34405350 + B1_Mm SINE Alu 2 147 0 1 1252 180 0 0 0 chr11 87438995 87439015 -34404841 + (TAGG)n Simple_repeat Simple_repeat 4 23 0 1 1252 1033 79 64 0 chr11 87439030 87439170 -34404686 - B1_Mur3 SINE Alu 0 149 1 1 1252 806 187 43 0 chr11 87439173 87439312 -34404544 - B1_Mur3 SINE Alu -2 147 3 1 1252 550 309 22 0 chr11 87439315 87439454 -34404402 + B3A SINE B2 8 149 -49 1 1252 235 263 0 66 chr11 87439463 87439524 -34404332 + PB1D9 SINE Alu 5 61 -59 1 1252 1342 71 27 5 chr11 87439734 87439918 -34403938 + B2_Mm2 SINE B2 2 189 -6 1 1252 452 274 38 0 chr11 87439955 87440061 -34403795 + PB1D10 SINE Alu 1 110 -7 1 1252 327 85 0 0 chr11 87440076 87440123 -34403733 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1252 37 39 0 0 chr11 87440367 87440418 -34403438 + AT_rich Low_complexity Low_complexity 1 51 0 1 1252 465 142 0 2 chr11 87440457 87440537 -34403319 - PB1D9 SINE Alu -52 98 20 1 1252 226 226 79 16 chr11 87440685 87440748 -34403108 - ID SINE ID -135 89 23 1 1252 236 239 22 0 chr11 87440704 87440750 -34403106 - ID4_ SINE ID -17 66 20 1 1252 292 276 27 60 chr11 87441007 87441192 -34402664 - L1MB3 LINE L1 -103 6080 5902 1 1252 511 231 242 43 chr11 87441214 87441428 -34402428 - L1MB3 LINE L1 -57 6126 5871 1 1252 1300 108 21 0 chr11 87441428 87441614 -34402242 - B2_Mm2 SINE B2 -5 190 1 1 1252 511 231 242 43 chr11 87441614 87441775 -34402081 - L1MB3 LINE L1 -313 5870 5676 1 1252 858 190 0 0 chr11 87441897 87442039 -34401817 + B1_Mur4 SINE Alu 2 143 -7 1 1252 259 267 61 79 chr11 87442100 87442214 -34401642 - Tigger5 DNA MER2_type 0 2406 2295 1 1252 483 246 174 0 chr11 87442238 87442376 -34401480 - Tigger5 DNA MER2_type -2214 192 31 1 1252 359 281 90 58 chr11 87442647 87442784 -34401072 - L1M5 LINE L1 -2969 3177 3040 1 1252 1202 54 0 13 chr11 87442784 87442933 -34400923 - B1_Mus2 SINE Alu 0 147 1 1 1252 359 281 90 58 chr11 87442933 87442984 -34400872 - L1M5 LINE L1 -3107 3039 2984 1 1252 352 347 81 51 chr11 87444034 87444268 -34399588 - MIR SINE MIR -9 253 13 1 1252 792 258 107 7 chr11 87444524 87444747 -34399109 + ID_B1 SINE B4 10 264 -28 1 1252 552 149 0 0 chr11 87444927 87445021 -34398835 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1252 422 236 35 70 chr11 87445412 87445526 -34398330 - PB1D10 SINE Alu -7 110 1 1 1252 245 262 15 15 chr11 87445560 87445626 -34398230 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 1 1252 713 119 45 27 chr11 87445950 87446062 -34397794 + B1_Mus1 SINE Alu 35 148 0 1 1252 296 220 0 39 chr11 87446166 87446218 -34397638 - ID4_ SINE ID -6 77 28 1 1252 327 177 0 0 chr11 87446373 87446435 -34397421 + CT-rich Low_complexity Low_complexity 4 65 0 1 1252 568 220 53 30 chr11 87446436 87446567 -34397289 - B1F SINE Alu -15 134 1 1 1252 827 117 8 0 chr11 87446904 87447024 -34396832 + B1_Mus1 SINE Alu 27 147 -1 1 1252 661 269 0 28 chr11 87447092 87447237 -34396619 + RSINE1 SINE B4 4 144 -21 1 1252 245 146 21 0 chr11 87447245 87447293 -34396563 + GA-rich Low_complexity Low_complexity 2 50 0 1 1252 210 273 0 0 chr11 87447348 87447392 -34396464 + MIRb SINE MIR 42 85 -183 1 1252 554 281 20 40 chr11 87447407 87447559 -34396297 + B1F SINE Alu 1 149 0 1 1252 186 143 0 0 chr11 87447563 87447598 -34396258 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1252 374 327 81 9 chr11 87447644 87447755 -34396101 + RSINE1 SINE B4 43 161 -4 1 1252 597 321 43 11 chr11 87447810 87447996 -34395860 + ID_B1 SINE B4 2 193 -31 1 1252 261 0 0 0 chr11 87448008 87448037 -34395819 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1252 302 279 0 12 chr11 87448040 87448120 -34395736 + MIRb SINE MIR 144 222 -46 1 1252 286 250 0 70 chr11 87448360 87448446 -34395410 - B1F2 SINE Alu -69 80 1 1 1252 356 266 25 0 chr11 87448906 87448985 -34394871 - ID4_ SINE ID -2 81 1 1 1252 189 0 0 0 chr11 87449775 87449796 -34394060 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1252 530 185 18 27 chr11 87449897 87450008 -34393848 + B1F SINE Alu 6 115 -34 1 1252 431 143 14 0 chr11 87450003 87450073 -34393783 - B3A SINE B2 -127 71 1 1 1252 366 362 8 8 chr11 87450310 87450427 -34393429 - ID_B1 SINE B4 -26 198 82 1 1252 21 82 0 0 chr11 87450471 87450520 -34393336 + AT_rich Low_complexity Low_complexity 1 49 0 1 1252 258 258 0 16 chr11 87451984 87452047 -34391809 + B4A SINE B4 1 62 -230 1 1252 254 50 0 24 chr11 87452067 87452108 -34391748 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1252 286 216 173 67 chr11 87453022 87453126 -34390730 + B4A SINE B4 143 257 -35 1 1252 572 243 64 7 chr11 87453695 87453836 -34390020 - B1F SINE Alu 0 149 1 1 1252 334 259 17 100 chr11 87453865 87453985 -34389871 + PB1D7 SINE Alu 1 110 -10 1 1252 459 222 111 0 chr11 87454186 87454285 -34389571 + PB1D7 SINE Alu 4 113 -7 1 1252 1159 168 27 22 chr11 87454396 87454621 -34389235 - Lx9 LINE L1 -1001 6643 6418 1 1252 462 263 28 5 chr11 87454709 87454858 -34388998 - L1MA4A LINE L1 -206 5965 5810 1 1252 250 147 130 14 chr11 87454944 87455013 -34388843 - L1MA4A LINE L1 -479 5821 5745 1 1252 253 350 90 0 chr11 87455019 87455119 -34388737 - MLT1J-int LTR MaLR -549 838 730 1 1252 195 69 0 0 chr11 87455408 87455437 -34388419 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1252 1041 226 15 5 chr11 87455586 87455791 -34388065 - B3 SINE B2 -8 208 2 1 1252 458 200 351 26 chr11 87455819 87455973 -34387883 - B3 SINE B2 -12 204 1 1 1252 718 255 113 31 chr11 87456100 87456294 -34387562 + ID_B1 SINE B4 14 223 -1 1 1252 1379 223 22 4 chr11 87456597 87456872 -34386984 - MTD LTR MaLR -135 284 5 1 1252 457 238 0 0 chr11 87457160 87457240 -34386616 + ID4 SINE ID 1 80 -3 1 1252 684 173 103 22 chr11 87457333 87457469 -34386387 - B3 SINE B2 -69 147 1 1 1252 250 111 0 0 chr11 87458171 87458207 -34385649 + B3A SINE B2 1 36 -162 1 1252 188 67 33 0 chr11 87458263 87458293 -34385563 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 1252 233 213 0 0 chr11 87458306 87458367 -34385489 + T-rich Low_complexity Low_complexity 1 61 0 1 1252 1051 130 20 0 chr11 87458369 87458515 -34385341 - B1_Mur4 SINE Alu 0 150 2 1 1252 4748 161 43 1 chr11 87458577 87459358 -34384498 - Lx5 LINE L1 0 7050 6237 1 1252 327 261 141 28 chr11 87459396 87459538 -34384318 + ID_B1 SINE B4 67 224 0 1 1252 575 200 86 29 chr11 87460006 87460145 -34383711 - B1_Mur2 SINE Alu -1 148 2 1 1252 309 217 0 0 chr11 87460157 87460240 -34383616 + CT-rich Low_complexity Low_complexity 1 83 0 1 1252 389 279 13 93 chr11 87460261 87460362 -34383494 - ID_B1 SINE B4 -8 216 126 1 1252 581 232 74 116 chr11 87460362 87460552 -34383304 - B3A SINE B2 -14 184 3 1 1252 389 279 13 93 chr11 87460552 87460600 -34383256 - ID_B1 SINE B4 -99 125 80 1 1252 294 340 66 0 chr11 87461268 87461374 -34382482 + ID_B1 SINE B4 78 190 -34 1 1252 868 160 14 27 chr11 87461494 87461642 -34382214 - B1_Mur3 SINE Alu -1 148 3 1 1252 1141 50 0 0 chr11 87461686 87461825 -34382031 - B2_Mm2 SINE B2 -56 139 1 1 1252 2741 133 47 12 chr11 87461834 87462237 -34381619 - MTC LTR MaLR 0 421 5 1 1252 25 31 0 0 chr11 87462293 87462325 -34381531 + AT_rich Low_complexity Low_complexity 1 32 0 1 1252 702 266 55 35 chr11 87462327 87462526 -34381330 - ID_B1 SINE B4 -8 216 14 1 1252 194 308 151 19 chr11 87462653 87462759 -34381097 + L2a LINE L2 1641 1760 -1659 1 1252 345 353 85 0 chr11 87462871 87463072 -34380784 + L2a LINE L2 1959 2176 -1243 1 1252 258 302 91 16 chr11 87463086 87463207 -34380649 + L2a LINE L2 2286 2415 -1004 1 1252 874 243 19 7 chr11 87463217 87463436 -34380420 - B3A SINE B2 -6 210 1 1 1252 409 339 88 30 chr11 87463488 87463750 -34380106 + L2a LINE L2 2485 2761 -658 1 1252 2211 148 79 5 chr11 87463766 87464133 -34379723 + ORR1B1 LTR MaLR 1 394 0 1 1252 264 206 31 16 chr11 87464160 87464224 -34379632 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 1 1252 257 235 29 14 chr11 87464165 87464234 -34379622 + BC1_Mm scRNA scRNA 14 83 -69 1 1252 180 325 45 57 chr11 87464250 87464338 -34379518 + L2a LINE L2 2836 2922 -497 1 1252 252 349 257 0 chr11 87464357 87464703 -34379153 + L2a LINE L2 2975 3426 0 1 1252 225 220 0 0 chr11 87464789 87464839 -34379017 - L1MB3 LINE L1 -79 6104 6055 1 1252 219 302 90 40 chr11 87464936 87465036 -34378820 - RSINE1 SINE B4 -12 153 49 1 1252 23 33 0 0 chr11 87465107 87465137 -34378719 + AT_rich Low_complexity Low_complexity 1 30 0 1 1252 220 256 0 0 chr11 87465137 87465180 -34378676 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1252 552 331 14 0 chr11 87465196 87465338 -34378518 - RSINE1 SINE B4 -21 144 1 1 1252 301 261 0 44 chr11 87465344 87465412 -34378444 - ID4 SINE ID -17 66 2 1 1252 187 321 19 0 chr11 87465498 87465551 -34378305 - MIRm SINE MIR -31 245 192 1 1252 388 261 183 8 chr11 87465648 87465768 -34378088 + ID_B1 SINE B4 80 220 -4 1 1252 253 189 55 36 chr11 87465719 87465774 -34378082 + PB1D10 SINE Alu 62 117 0 1 1252 575 244 37 0 chr11 87465774 87465909 -34377947 + B3A SINE B2 2 141 -57 1 1252 423 335 6 112 chr11 87466078 87466391 -34377465 - L1MB5 LINE L1 -33 6141 5862 1 1252 223 186 0 23 chr11 87466440 87466484 -34377372 + CT-rich Low_complexity Low_complexity 3 45 0 1 1252 349 75 402 9 chr11 87466484 87466591 -34377265 - B2_Mm2 SINE B2 0 195 47 1 1252 1251 121 40 0 chr11 87466619 87466793 -34377063 - B2_Mm2 SINE B2 -14 181 1 1 1252 795 209 50 0 chr11 87466820 87466959 -34376897 - B1_Mus2 SINE Alu 0 147 2 1 1252 282 56 0 0 chr11 87466973 87467009 -34376847 + (GGGTG)n Simple_repeat Simple_repeat 1 36 0 1 1252 434 308 28 0 chr11 87467017 87467124 -34376732 - B1F1 SINE Alu -38 111 2 1 1252 34 19 0 36 chr11 87467534 87467552 -34376304 + AT_rich Low_complexity Low_complexity 1 17 0 1 1252 818 229 50 72 chr11 87467552 87467613 -34376243 + B3 SINE B2 1 51 -165 1 1252 1337 82 47 0 chr11 87467613 87467783 -34376073 + B2_Mm1t SINE B2 1 178 -15 1 1252 554 28 14 0 chr11 87467785 87467857 -34375999 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1252 818 229 50 72 chr11 87467857 87468013 -34375843 + B3 SINE B2 52 216 0 1 1252 34 19 0 36 chr11 87468013 87468050 -34375806 + AT_rich Low_complexity Low_complexity 1 34 0 1 1252 465 291 8 0 chr11 87468254 87468371 -34375485 + PB1D7 SINE Alu 1 118 -2 1 1252 224 30 30 0 chr11 87468725 87468758 -34375098 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1252 874 179 13 40 chr11 87468762 87468913 -34374943 - B1_Mus2 SINE Alu 0 147 1 1 1252 2784 41 0 0 chr11 87469055 87469373 -34374483 - L1Md_A LINE L1 0 6582 6265 1 1252 1033 186 257 19 chr11 87469375 87469632 -34374224 - ORR1B2 LTR MaLR -49 318 1 1 1252 516 226 113 0 chr11 87469711 87469835 -34374021 - B1F2 SINE Alu -10 139 2 1 1252 601 245 28 14 chr11 87469940 87470085 -34373771 + MER5B DNA MER1_type 32 178 0 1 1252 243 0 0 0 chr11 87470339 87470366 -34373490 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1252 571 254 42 7 chr11 87470418 87470561 -34373295 - B1F1 SINE Alu -1 148 1 1 1252 28 0 0 0 chr11 87471098 87471126 -34372730 + AT_rich Low_complexity Low_complexity 1 28 0 1 1252 28 29 0 0 chr11 87471607 87471642 -34372214 + AT_rich Low_complexity Low_complexity 1 35 0 1 1252 280 257 15 31 chr11 87473152 87473234 -34370622 - ID4_ SINE ID -49 103 23 1 1252 519 224 9 27 chr11 87473241 87473351 -34370505 - PB1D10 SINE Alu -7 110 3 1 1252 372 169 0 78 chr11 87473357 87473434 -34370422 + ID_B1 SINE B4 149 219 -5 1 1252 473 274 38 38 chr11 87474147 87474280 -34369576 + RSINE1 SINE B4 5 137 -28 1 1252 201 68 68 0 chr11 87474296 87474340 -34369516 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1252 300 296 65 11 chr11 87474393 87474495 -34369361 + PB1D10 SINE Alu 1 116 -11 1 1252 393 300 107 8 chr11 87474669 87474800 -34369056 - B1F SINE Alu -5 144 1 1 1252 903 203 128 0 chr11 87474977 87475164 -34368692 + B3 SINE B2 1 211 -5 1 1252 886 216 157 22 chr11 87475325 87475510 -34368346 - B3 SINE B2 -6 210 1 1 1252 243 88 0 0 chr11 87478547 87478581 -34365275 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1252 276 53 0 0 chr11 87479186 87479224 -34364632 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1252 21 0 0 0 chr11 87479444 87479465 -34364391 + AT_rich Low_complexity Low_complexity 1 21 0 1 1252 766 223 0 20 chr11 87479483 87479634 -34364222 + B1_Mur2 SINE Alu 1 148 -1 1 1252 285 146 0 0 chr11 87480878 87480926 -34362930 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1252 518 0 16 0 chr11 87481110 87481172 -34362684 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1252 305 223 146 88 chr11 87482321 87482513 -34361343 - MIR SINE MIR -37 225 23 1 1252 1294 184 24 0 chr11 87483053 87483259 -34360597 - B3 SINE B2 -4 212 2 1 1252 425 302 57 14 chr11 87483313 87483454 -34360402 + B1F2 SINE Alu 2 148 -1 1 1252 279 0 0 0 chr11 87483609 87483640 -34360216 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1252 1269 54 7 0 chr11 87483640 87483787 -34360069 - B1_Mus1 SINE Alu 0 148 1 1 1252 985 90 8 0 chr11 87483855 87483989 -34359867 + B1_Mus1 SINE Alu 1 135 -13 1 1252 367 115 25 25 chr11 87483991 87484071 -34359785 + (CATA)n Simple_repeat Simple_repeat 4 83 0 1 1252 229 200 100 0 chr11 87484073 87484163 -34359693 - L1MCa LINE L1 -4550 1958 1860 1 1252 1044 202 78 0 chr11 87484506 87484699 -34359157 + B3 SINE B2 1 208 -8 1 1252 644 209 8 8 chr11 87484752 87484882 -34358974 - B1_Mur1 SINE Alu -2 147 18 1 1252 317 318 109 53 chr11 87485333 87485599 -34358257 + L2a LINE L2 3141 3421 -5 1 1252 584 248 0 24 chr11 87485894 87486018 -34357838 - B1F2 SINE Alu -4 145 25 1 1252 1199 70 0 0 chr11 87486147 87486289 -34357567 + B1_Mus2 SINE Alu 1 142 -5 1 1252 260 19 18 71 chr11 87486291 87486347 -34357509 + (CAAA)n Simple_repeat Simple_repeat 1 53 0 1 1252 348 24 0 0 chr11 87486452 87486493 -34357363 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1252 384 260 0 0 chr11 87486493 87486566 -34357290 - ID SINE ID -141 83 11 1 1252 546 287 29 0 chr11 87487666 87487802 -34356054 + B1F SINE Alu 1 140 -9 1 1252 1675 32 16 0 chr11 87487818 87488004 -34355852 - B2_Mm2 SINE B2 -6 189 1 1 1252 290 179 286 0 chr11 87488027 87488111 -34355745 + PB1D7 SINE Alu 6 113 -7 1 1252 828 201 114 0 chr11 87488137 87488321 -34355535 + B3 SINE B2 2 206 -10 1 1252 371 257 0 0 chr11 87488373 87488447 -34355409 + ID4 SINE ID 5 78 -5 1 1252 469 220 11 11 chr11 87488497 87488589 -34355267 + PB1D10 SINE Alu 26 117 0 1 1252 357 206 14 14 chr11 87489062 87489136 -34354720 + ID4 SINE ID 5 78 -5 1 1252 478 273 9 0 chr11 87489651 87489761 -34354095 - ID_B1 SINE B4 -6 218 108 1 1252 422 36 18 0 chr11 87489783 87489839 -34354017 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1252 307 326 0 20 chr11 87489856 87489956 -34353900 + PB1D7 SINE Alu 23 120 0 1 1252 197 65 32 0 chr11 87489993 87490024 -34353832 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1 1252 345 159 216 93 chr11 87490060 87490137 -34353719 + PB1D10 SINE Alu 19 115 -12 1 1252 213 39 0 0 chr11 87490137 87490163 -34353693 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1252 300 159 216 93 chr11 87490163 87490182 -34353674 + PB1 SINE Alu 116 127 0 1 1252 480 268 94 0 chr11 87490214 87490352 -34353504 - B3 SINE B2 -13 203 53 1 1252 351 0 0 0 chr11 87490509 87490548 -34353308 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1252 223 59 0 105 chr11 87490548 87490575 -34353281 - B3A SINE B2 -169 29 3 1 1252 264 30 0 0 chr11 87490609 87490642 -34353214 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1 1252 360 206 143 61 chr11 87490648 87490746 -34353110 - PB1D10 SINE Alu -9 108 3 1 1252 907 211 33 29 chr11 87492937 87493147 -34350709 - B3 SINE B2 -3 213 3 1 1252 982 141 0 0 chr11 87493392 87493527 -34350329 + B1_Mur1 SINE Alu 5 139 -10 1 1252 186 43 0 0 chr11 87493527 87493550 -34350306 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1252 3738 8 0 12 chr11 87493712 87494119 -34349737 + L1Md_T LINE L1 6181 6582 0 1 1252 351 302 51 31 chr11 87495218 87495392 -34348464 + MIRc SINE MIR 2 174 -94 1 1252 202 211 0 0 chr11 87496510 87496548 -34347308 + GA-rich Low_complexity Low_complexity 2 39 0 1 1252 470 202 16 66 chr11 87496919 87497041 -34346815 - PB1D10 SINE Alu 0 117 2 1 1252 320 76 129 72 chr11 87497529 87497642 -34346214 - B2_Mm2 SINE B2 -3 192 47 1 1252 1226 120 17 0 chr11 87497685 87497860 -34345996 - B2_Mm1t SINE B2 -14 179 2 1 1252 220 125 20 40 chr11 87497988 87498038 -34345818 + (TCTG)n Simple_repeat Simple_repeat 1 49 0 1 1252 230 250 17 0 chr11 87498099 87498159 -34345697 + CT-rich Low_complexity Low_complexity 1 61 0 1 1252 738 234 7 7 chr11 87498332 87498478 -34345378 - B1_Mur1 SINE Alu -2 147 2 1 1252 472 250 52 0 chr11 87498482 87498598 -34345258 - ID_B1 SINE B4 -1 223 102 1 1252 602 193 55 41 chr11 87498889 87499035 -34344821 - B1F SINE Alu -1 148 1 1 1252 411 21 0 0 chr11 87499045 87499093 -34344763 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1252 257 0 30 0 chr11 87499093 87499126 -34344730 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1252 972 221 45 67 chr11 87499138 87499361 -34344495 - ID_B1 SINE B4 -4 220 3 1 1252 339 25 0 0 chr11 87499758 87499798 -34344058 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1252 296 48 24 0 chr11 87499799 87499841 -34344015 + (CACG)n Simple_repeat Simple_repeat 1 43 0 1 1252 396 59 0 0 chr11 87500354 87500405 -34343451 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 1 1252 182 37 0 36 chr11 87500406 87500434 -34343422 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 1252 207 0 0 0 chr11 87500457 87500480 -34343376 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 1252 1273 41 0 0 chr11 87500486 87500633 -34343223 - B1_Mus1 SINE Alu 0 148 2 4 1252 189 0 0 0 chr11 87500633 87500654 -34343202 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 5 1252 270 346 31 16 chr11 87502377 87502506 -34341350 - B1F SINE Alu -18 131 1 6 1252 317 245 83 30 chr11 87502871 87503039 -34340817 - RMER17D LTR ERVK -497 392 216 7 1252 561 271 114 15 chr11 87504005 87504207 -34339649 - ID_B1 SINE B4 -2 222 1 8 1252 493 274 97 0 chr11 87504376 87504500 -34339356 - B1F SINE Alu -10 139 4 9 1252 666 249 75 16 chr11 87504628 87504816 -34339040 - ID_B1 SINE B4 -2 222 24 1 1252 405 0 0 0 chr11 87505291 87505336 -34338520 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1252 297 0 0 0 chr11 87505336 87505368 -34338488 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1252 334 316 70 0 chr11 87505942 87506056 -34337800 - MER5A DNA MER1_type -67 122 1 1 1252 1085 64 133 6 chr11 87506506 87506664 -34337192 + B2_Mm1t SINE B2 2 179 -14 1 1252 396 0 0 0 chr11 87506744 87506788 -34337068 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 1 1252 358 187 376 18 chr11 87506806 87506915 -34336941 + B1_Mur2 SINE Alu 2 149 0 1 1252 512 262 12 75 chr11 87506923 87507084 -34336772 + RSINE1 SINE B4 2 152 -13 1 1252 342 0 0 0 chr11 87507105 87507143 -34336713 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1252 327 25 0 0 chr11 87507143 87507182 -34336674 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1252 1416 53 31 26 chr11 87507410 87507604 -34336252 + B2_Mm2 SINE B2 1 195 0 2 1252 494 267 21 62 chr11 87507702 87507846 -34336010 - B1F SINE Alu -11 138 1 2 1252 495 184 71 0 chr11 87507983 87508081 -34335775 - U6 snRNA snRNA 0 107 3 2 1252 195 42 0 0 chr11 87508353 87508377 -34335479 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 2 1252 548 239 7 29 chr11 87508389 87508527 -34335329 - B1F SINE Alu -3 146 12 2 1252 1736 232 71 88 chr11 87508687 87508977 -34334879 - Lx7 LINE L1 -211 7485 7190 2 1252 599 0 14 0 chr11 87508977 87509048 -34334808 + (TTC)n Simple_repeat Simple_repeat 2 73 0 2 1252 1158 70 0 7 chr11 87509048 87509193 -34334663 - B1_Mus1 SINE Alu -2 146 3 2 1252 1736 232 71 88 chr11 87509193 87509447 -34334409 - Lx7 LINE L1 -507 7189 6956 2 1252 855 29 0 0 chr11 87509447 87509549 -34334307 + (GGGA)n Simple_repeat Simple_repeat 4 105 0 2 1252 1736 232 71 88 chr11 87509549 87509636 -34334220 - Lx7 LINE L1 -741 6955 6865 2 1252 22 0 0 0 chr11 87509679 87509701 -34334155 + AT_rich Low_complexity Low_complexity 1 22 0 2 1252 504 286 50 31 chr11 87509711 87509870 -34333986 - RSINE1 SINE B4 0 165 4 3 1252 24 0 0 0 chr11 87509992 87510016 -34333840 + AT_rich Low_complexity Low_complexity 1 24 0 3 1252 962 212 53 0 chr11 87511204 87511393 -34332463 + B3 SINE B2 4 202 -14 3 1252 759 292 50 47 chr11 87511428 87511705 -34332151 + B4A SINE B4 1 278 -14 3 1252 253 171 51 163 chr11 87511872 87511970 -34331886 - RLTR25B LTR ERVK -240 788 702 3 1252 22 0 0 0 chr11 87512367 87512389 -34331467 + AT_rich Low_complexity Low_complexity 1 22 0 3 1252 2232 142 5 64 chr11 87512389 87512809 -34331047 - RMER10B LTR ERVL -3 395 1 3 1252 247 220 22 0 chr11 87512810 87512901 -34330955 + (TTA)n Simple_repeat Simple_repeat 1 93 0 3 1252 724 194 8 0 chr11 87512901 87513025 -34330831 - B1_Mur1 SINE Alu -23 126 2 3 1252 579 264 55 75 chr11 87513033 87513234 -34330622 - B3A SINE B2 0 198 2 3 1252 645 230 28 28 chr11 87516273 87516416 -34327440 + B3A SINE B2 1 143 -55 4 1252 1273 27 7 0 chr11 87516700 87516846 -34327010 - B1_Mus1 SINE Alu 0 148 2 4 1252 581 0 14 0 chr11 87516863 87516932 -34326924 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1252 1270 105 41 0 chr11 87516957 87517129 -34326727 + B2_Mm2 SINE B2 1 179 -16 4 1252 620 236 111 40 chr11 87517150 87517349 -34326507 - B3 SINE B2 0 216 4 4 1252 506 197 227 28 chr11 87517464 87517605 -34326251 + B3A SINE B2 2 170 -28 4 1252 345 241 58 67 chr11 87518698 87518714 -34325142 - PB1D9 SINE Alu -1 119 108 4 1252 198 0 0 0 chr11 87518714 87518736 -34325120 + (GTTTG)n Simple_repeat Simple_repeat 1 22 0 4 1252 345 241 58 67 chr11 87518736 87518839 -34325017 - PB1D9 SINE Alu -13 107 1 4 1252 963 109 13 13 chr11 87518910 87519059 -34324797 - B1_Mur4 SINE Alu 0 150 2 4 1252 1253 41 0 0 chr11 87519573 87519718 -34324138 + B1_Mm SINE Alu 2 146 -1 4 1252 272 257 71 0 chr11 87519771 87519841 -34324015 - PB1D7 SINE Alu -10 110 36 5 1252 237 333 15 37 chr11 87520094 87520114 -34323742 - RLTR25B LTR ERVK -504 524 472 5 1252 368 219 0 14 chr11 87520114 87520188 -34323668 - ID_B1 SINE B4 -37 187 115 5 1252 312 204 239 0 chr11 87520188 87520202 -34323654 - B1F1 SINE Alu -40 109 1 5 1252 237 333 15 37 chr11 87520202 87520228 -34323628 - RLTR25B LTR ERVK -504 471 394 5 1252 357 24 0 0 chr11 87520239 87520281 -34323575 + (TTG)n Simple_repeat Simple_repeat 2 43 0 5 1252 979 220 26 5 chr11 87520287 87520479 -34323377 - ID_B1 SINE B4 -28 196 1 5 1252 290 245 4 15 chr11 87520479 87520560 -34323296 - PB1D7 SINE Alu -23 94 17 5 1252 549 0 0 0 chr11 87520589 87520650 -34323206 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 5 1252 669 229 35 21 chr11 87520671 87520814 -34323042 - B1F2 SINE Alu -4 145 1 5 1252 369 0 0 0 chr11 87521331 87521372 -34322484 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1252 981 104 7 0 chr11 87521697 87521832 -34322024 + B1_Mus1 SINE Alu 1 136 -12 6 1252 992 193 91 10 chr11 87522358 87522557 -34321299 - B3 SINE B2 -1 215 1 6 1252 299 233 24 189 chr11 87522770 87522897 -34320959 + PB1D7 SINE Alu 15 120 0 6 1252 594 220 37 0 chr11 87522783 87522892 -34320964 + ID_B1 SINE B4 109 221 -3 6 1252 259 296 109 23 chr11 87522892 87522911 -34320945 - YREP_Mm Unknown Unknown -1523 289 151 6 1252 243 272 59 47 chr11 87523832 87523917 -34319939 - MIRb SINE MIR 0 268 183 6 1252 502 272 0 16 chr11 87523946 87524073 -34319783 + PB1 SINE Alu 1 125 -2 6 1252 328 339 194 4 chr11 87524601 87524838 -34319018 - MamGypLTR1b LTR Gypsy -1 781 500 6 1252 302 308 13 0 chr11 87524855 87524933 -34318923 + ID4 SINE ID 5 83 0 6 1252 720 252 90 10 chr11 87524957 87525157 -34318699 + ID_B1 SINE B4 5 220 -4 6 1252 290 282 217 6 chr11 87525345 87525520 -34318336 - MamGypLTR1b LTR Gypsy -537 247 36 6 1252 1272 48 0 0 chr11 87525531 87525678 -34318178 + B1_Mus2 SINE Alu 1 147 0 7 1252 243 88 0 0 chr11 87525678 87525712 -34318144 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1252 338 256 223 0 chr11 87526192 87526313 -34317543 - RSINE1 SINE B4 -4 161 14 7 1252 749 90 0 9 chr11 87526751 87526863 -34316993 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 7 1252 342 0 0 0 chr11 87526866 87526904 -34316952 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 7 1252 572 141 0 0 chr11 87526909 87526994 -34316862 - PB1D9 SINE Alu -7 113 29 7 1252 1563 179 77 26 chr11 87527017 87527406 -34316450 - RMER17C LTR ERVK 0 410 2 7 1252 821 152 14 21 chr11 87527683 87527824 -34316032 + B1_Mur3 SINE Alu 2 141 -8 7 1252 361 217 108 45 chr11 87527923 87528034 -34315822 + PB1D7 SINE Alu 2 119 -1 7 1252 537 190 59 25 chr11 87528132 87528251 -34315605 - B1F SINE Alu -13 136 14 7 1252 473 117 24 72 chr11 87528302 87528385 -34315471 - B1_Mur1 SINE Alu -40 109 31 8 1252 200 281 53 63 chr11 87528385 87528480 -34315376 + MIR SINE MIR 76 169 -93 8 1252 310 265 11 46 chr11 87529485 87529572 -34314284 + B4 SINE B4 9 92 -200 8 1252 844 218 89 7 chr11 87529577 87529775 -34314081 + B3 SINE B2 4 214 -2 8 1252 463 160 27 0 chr11 87529777 87529852 -34314004 + B1_Mus1 SINE Alu 11 87 -61 8 1252 791 304 5 38 chr11 87529853 87530062 -34313794 + B4A SINE B4 85 286 -6 8 1252 330 26 0 0 chr11 87530075 87530114 -34313742 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1252 425 217 84 90 chr11 87530868 87530983 -34312873 - B1F SINE Alu -7 120 1 8 1252 244 277 103 103 chr11 87531022 87531187 -34312669 + RSINE1 SINE B4 1 165 0 8 1252 1364 87 49 0 chr11 87531200 87531384 -34312472 - B2_Mm2 SINE B2 0 195 3 8 1252 22 0 0 0 chr11 87531384 87531406 -34312450 + AT_rich Low_complexity Low_complexity 1 22 0 8 1252 1012 128 0 20 chr11 87531418 87531569 -34312287 + B1_Mur3 SINE Alu 1 148 -1 9 1252 1086 83 0 14 chr11 87531586 87531733 -34312123 + B1_Mus2 SINE Alu 1 145 -2 9 1252 930 104 21 36 chr11 87532098 87532238 -34311618 + B1_Mus1 SINE Alu 5 142 -6 9 1252 180 0 0 0 chr11 87532244 87532264 -34311592 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1252 1147 171 18 62 chr11 87532298 87532522 -34311334 + B3 SINE B2 1 214 -2 9 1252 1233 50 0 0 chr11 87532542 87532683 -34311173 + B1_Mus1 SINE Alu 2 142 -6 9 1252 431 305 23 0 chr11 87533006 87533134 -34310722 + B1_Mur1 SINE Alu 1 131 -18 9 1252 730 269 62 0 chr11 87533266 87533474 -34310382 + ID_B1 SINE B4 2 222 -2 9 1252 914 145 14 7 chr11 87533555 87533701 -34310155 + B1_Mus2 SINE Alu 1 147 0 9 1252 300 276 198 0 chr11 87533701 87533715 -34310141 + B4 SINE B4 81 219 -73 9 1252 524 226 20 0 chr11 87533715 87533817 -34310039 + PB1D9 SINE Alu 10 113 -7 1 1252 189 0 0 0 chr11 87533819 87533840 -34310016 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1 1252 339 287 35 0 chr11 87533857 87533944 -34309912 + PB1D10 SINE Alu 27 116 -1 1 1252 313 137 3 73 chr11 87534155 87534225 -34309631 - PB1D7 SINE Alu -1 148 67 1 1252 252 274 0 76 chr11 87534220 87534299 -34309557 - ORR1D2 LTR MaLR -297 73 1 1 1252 290 258 39 88 chr11 87534581 87534683 -34309173 - B1_Mm SINE Alu -50 97 1 1 1252 257 250 16 0 chr11 87534628 87534692 -34309164 - ID_B1 SINE B4 -87 137 73 1 1252 342 0 0 0 chr11 87534848 87534886 -34308970 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1252 702 149 0 0 chr11 87534919 87535026 -34308830 - B2_Mm2 SINE B2 -88 107 1 1 1252 250 250 61 30 chr11 87535109 87535208 -34308648 - MTEa LTR MaLR 0 379 278 1 1252 553 275 19 80 chr11 87535320 87535482 -34308374 - MTEa LTR MaLR -227 152 1 1 1252 468 0 0 0 chr11 87535705 87535757 -34308099 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1252 713 226 40 4 chr11 87535869 87536006 -34307850 + ID_B1 SINE B4 81 219 -73 1 1252 1056 150 75 0 chr11 87536006 87536179 -34307677 + B2_Mm2 SINE B2 1 186 -9 1 1252 226 315 73 97 chr11 87536179 87536206 -34307650 + B4A SINE B4 220 245 -47 1 1252 1277 171 0 28 chr11 87536466 87536677 -34307179 - B3 SINE B2 -10 206 2 1 1252 215 364 15 0 chr11 87536837 87536903 -34306953 - ID4_ SINE ID -1 82 16 1 1252 441 289 8 50 chr11 87537167 87537287 -34306569 + PB1D10 SINE Alu 2 116 -1 1 1252 436 350 54 16 chr11 87537473 87537659 -34306197 - MIR SINE MIR -31 231 39 1 1252 513 0 0 0 chr11 87537939 87537996 -34305860 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1252 1306 139 9 26 chr11 87538084 87538313 -34305543 + URR1B DNA MER1_type 1 225 0 1 1252 432 0 0 0 chr11 87539378 87539426 -34304430 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1252 241 338 104 37 chr11 87541033 87541168 -34302688 + MIR3 SINE MIR 43 186 -22 1 1252 198 143 0 0 chr11 87541804 87541839 -34302017 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 1 1252 234 0 0 0 chr11 87541853 87541879 -34301977 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1252 971 150 0 0 chr11 87541976 87542123 -34301733 + B1_Mus1 SINE Alu 1 147 -1 1 1252 218 301 83 100 chr11 87542139 87542368 -34301488 - L2a LINE L2 -110 3316 3092 1 1252 1357 109 16 0 chr11 87542520 87542704 -34301152 - B2_Mm2 SINE B2 -8 187 1 1 1252 233 261 46 0 chr11 87543363 87543428 -34300428 + PB1D9 SINE Alu 1 68 -52 1 1252 293 348 87 41 chr11 87543841 87544036 -34299820 + Zaphod2 DNA Tip100 5 208 -3316 1 1252 200 366 0 139 chr11 87544044 87544099 -34299757 + MER91B DNA Tip100 98 140 -50 1 1252 1470 73 21 0 chr11 87544099 87544290 -34299566 + B2_Mm2 SINE B2 1 195 0 1 1252 200 366 0 139 chr11 87544290 87544342 -34299514 + MER91B DNA Tip100 141 190 0 1 1252 248 220 0 17 chr11 87545430 87545490 -34298366 + (CCCCAG)n Simple_repeat Simple_repeat 3 61 0 1 1252 937 139 14 0 chr11 87546072 87546216 -34297640 + B1_Mus1 SINE Alu 3 148 0 1 1252 243 0 0 0 chr11 87546236 87546263 -34297593 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1252 261 0 0 0 chr11 87546468 87546497 -34297359 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1 1252 197 407 0 34 chr11 87547327 87547416 -34296440 + MIRm SINE MIR 190 275 -1 1 1252 216 0 0 0 chr11 87547941 87547965 -34295891 + (CAGC)n Simple_repeat Simple_repeat 4 27 0 1 1252 310 367 73 26 chr11 87549105 87549256 -34294600 - ID_B1 SINE B4 -3 221 64 1 1252 298 258 0 15 chr11 87549460 87549527 -34294329 + B1_Mur2 SINE Alu 67 132 -17 1 1252 237 33 0 0 chr11 87549529 87549559 -34294297 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1252 240 317 79 0 chr11 87549586 87549687 -34294169 - B4A SINE B4 -136 156 48 1 1252 525 225 91 0 chr11 87550521 87550653 -34293203 + ID_B1 SINE B4 79 218 -6 1 1252 3693 74 2 4 chr11 87551935 87552423 -34291433 - RLTR1C LTR ERV1 -16 487 1 1 1252 549 238 57 28 chr11 87552423 87552600 -34291256 + MER33 DNA MER1_type 35 216 -108 1 1252 461 94 0 0 chr11 87552603 87552667 -34291189 + B1_Mus1 SINE Alu 1 64 -84 1 1252 26 0 0 0 chr11 87552672 87552698 -34291158 + AT_rich Low_complexity Low_complexity 1 26 0 1 1252 1181 61 0 20 chr11 87552748 87552899 -34290957 - B1_Mus1 SINE Alu 0 148 1 1 1252 577 296 0 29 chr11 87553239 87553378 -34290478 + ID_B1 SINE B4 86 220 -4 1 1252 408 118 0 0 chr11 87553470 87553538 -34290318 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1252 625 234 132 17 chr11 87554289 87554463 -34289393 - B3A SINE B2 0 198 5 1 1252 1270 113 16 0 chr11 87554665 87554851 -34289005 - B2_Mm1t SINE B2 -4 189 1 1 1252 21 0 0 0 chr11 87554905 87554926 -34288930 + AT_rich Low_complexity Low_complexity 1 21 0 1 1252 534 214 55 7 chr11 87554952 87555086 -34288770 - PB1D9 SINE Alu -4 145 1 1 1252 297 258 221 23 chr11 87554978 87555109 -34288747 - B4 SINE B4 -71 221 65 1 1252 226 333 77 19 chr11 87555180 87555284 -34288572 - PB1D10 SINE Alu -7 110 1 1 1252 1084 66 0 7 chr11 87555945 87556083 -34287773 + B1_Mus1 SINE Alu 2 138 -10 1 156 225 0 0 0 chr11 87556083 87556108 -34287748 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1253 285 29 0 0 chr11 87556394 87556428 -34287428 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1253 297 0 0 0 chr11 87556428 87556460 -34287396 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1253 846 110 165 0 chr11 87557764 87557891 -34285965 + B1_Mus1 SINE Alu 1 148 0 1 1253 249 108 0 0 chr11 87557893 87557930 -34285926 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1253 282 231 154 0 chr11 87557958 87558049 -34285807 + PB1D10 SINE Alu 12 116 -1 1 1253 361 194 27 40 chr11 87559089 87559164 -34284692 - ID4_ SINE ID -8 75 2 1 1253 297 261 65 26 chr11 87559164 87559300 -34284556 - PB1D10 SINE Alu -2 147 3 1 1253 213 286 0 0 chr11 87559737 87559800 -34284056 - MIRc SINE MIR -14 254 192 1 1253 287 224 0 29 chr11 87560385 87560454 -34283402 + CT-rich Low_complexity Low_complexity 4 70 0 1 1253 518 234 70 35 chr11 87560454 87560596 -34283260 - B1_Mur1 SINE Alu 0 149 3 1 1253 813 190 22 0 chr11 87560784 87560921 -34282935 - B1_Mur4 SINE Alu -9 141 2 1 1253 207 179 45 0 chr11 87560983 87561050 -34282806 + CT-rich Low_complexity Low_complexity 2 71 0 1 1253 324 0 0 0 chr11 87561075 87561111 -34282745 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1253 244 324 43 35 chr11 87563583 87563698 -34280158 + MIRb SINE MIR 83 198 -70 1 1253 495 0 0 0 chr11 87564357 87564412 -34279444 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1253 222 37 0 0 chr11 87564412 87564438 -34279418 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1253 462 18 0 0 chr11 87564452 87564507 -34279349 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1253 595 202 333 12 chr11 87565877 87566042 -34277814 + ID_B1 SINE B4 1 218 -6 1 1253 722 181 181 83 chr11 87566057 87566250 -34277606 + B3 SINE B2 5 216 0 1 1253 213 209 15 0 chr11 87566256 87566301 -34277555 + A-rich Low_complexity Low_complexity 2 46 0 1 1253 1163 68 0 13 chr11 87566301 87566450 -34277406 + B1_Mm SINE Alu 1 147 0 1 1253 213 209 15 0 chr11 87566450 87566471 -34277385 + A-rich Low_complexity Low_complexity 47 68 0 1 1253 796 215 0 32 chr11 87566473 87566627 -34277229 + B1_Mur3 SINE Alu 1 149 0 1 1253 183 295 49 0 chr11 87567490 87567551 -34276305 - MIR SINE MIR -118 90 27 1 1253 194 0 39 0 chr11 87569340 87569366 -34274490 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1253 310 71 286 0 chr11 87569375 87569431 -34274425 - BC1_Mm scRNA scRNA -80 72 1 1 1253 224 95 0 67 chr11 87569452 87569467 -34274389 + A-rich Low_complexity Low_complexity 1 13 0 1 1253 1158 75 0 7 chr11 87569467 87569615 -34274241 + B1_Mm SINE Alu 1 147 0 1 1253 224 95 0 67 chr11 87569615 87569644 -34274212 + A-rich Low_complexity Low_complexity 14 42 0 1 1253 1342 158 9 9 chr11 87571070 87571293 -34272563 - URR1B DNA MER1_type -2 223 1 1 1253 1255 105 33 0 chr11 87571305 87571486 -34272370 - B2_Mm1t SINE B2 -5 188 2 1 1253 656 24 12 0 chr11 87571515 87571597 -34272259 + (TC)n Simple_repeat Simple_repeat 1 83 0 1 1253 1102 83 21 0 chr11 87571598 87571742 -34272114 - B1_Mus1 SINE Alu -1 147 1 1 1253 551 253 18 76 chr11 87572129 87572300 -34271556 - RSINE1 SINE B4 0 165 5 1 1253 391 222 48 57 chr11 87572429 87572553 -34271303 + MER2 DNA MER2_type 103 225 -120 1 1253 342 172 0 0 chr11 87572562 87572620 -34271236 + ID4_ SINE ID 2 59 -24 1 1253 326 375 8 38 chr11 87572618 87572751 -34271105 + MER2 DNA MER2_type 214 342 -3 1 1253 200 86 29 0 chr11 87574649 87574684 -34269172 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1253 188 0 74 0 chr11 87575298 87575325 -34268531 + (TCTCTG)n Simple_repeat Simple_repeat 4 32 0 1 1253 182 233 23 0 chr11 87577447 87577490 -34266366 + MIRb SINE MIR 208 251 -17 1 1253 26 0 0 0 chr11 87577855 87577881 -34265975 + GC_rich Low_complexity Low_complexity 1 26 0 1 1253 211 290 16 0 chr11 87580484 87580546 -34263310 + PB1D10 SINE Alu 55 117 0 1 1253 644 209 162 11 chr11 87580849 87581028 -34262828 - MTD LTR MaLR -15 404 199 1 1253 622 269 0 0 chr11 87581076 87581217 -34262639 - B1_Mur2 SINE Alu 0 149 9 1 1253 957 255 8 20 chr11 87581186 87581434 -34262422 - MTD LTR MaLR -174 245 1 1 1253 339 25 0 0 chr11 87582518 87582558 -34261298 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1253 1209 41 0 20 chr11 87582563 87582712 -34261144 - B1_Mus1 SINE Alu 0 148 3 2 1253 229 360 41 64 chr11 87583580 87583752 -34260104 + MIRb SINE MIR 22 189 -79 2 1253 311 302 104 48 chr11 87584421 87584546 -34259310 + MIRb SINE MIR 81 212 -56 2 1253 390 279 219 8 chr11 87586554 87586677 -34257179 - B3A SINE B2 -38 160 12 2 1253 1133 107 0 0 chr11 87586718 87586867 -34256989 - B1_Mur4 SINE Alu 0 150 2 2 1253 666 205 24 0 chr11 87586918 87587045 -34256811 - B3 SINE B2 -86 130 1 2 1253 344 302 37 9 chr11 87587062 87587169 -34256687 - PB1D9 SINE Alu -8 112 3 2 1253 657 291 78 11 chr11 87587221 87587345 -34256511 + ID_B1 SINE B4 2 138 -86 2 1253 408 55 0 0 chr11 87587345 87587400 -34256456 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1253 657 291 78 11 chr11 87587400 87587466 -34256390 + ID_B1 SINE B4 139 204 -20 2 1253 271 306 34 51 chr11 87587663 87587780 -34256076 + MER5A1 DNA MER1_type 49 163 -3 2 1253 237 108 0 0 chr11 87587946 87587983 -34255873 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1253 219 139 0 0 chr11 87590632 87590668 -34253188 + (GAA)n Simple_repeat Simple_repeat 1 36 0 2 1253 219 69 0 0 chr11 87591376 87591405 -34252451 + (GGA)n Simple_repeat Simple_repeat 2 30 0 2 1253 310 348 54 68 chr11 87593169 87593391 -34250465 + MIR SINE MIR 22 240 -22 2 1253 261 251 35 0 chr11 87594224 87594289 -34249567 + ID4 SINE ID 25 91 -61 2 1253 366 80 0 0 chr11 87596894 87596944 -34246912 + (CAG)n Simple_repeat Simple_repeat 3 52 0 2 1253 262 263 12 0 chr11 87597625 87597796 -34246060 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1253 604 186 11 0 chr11 87597857 87598034 -34245822 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1253 363 211 0 0 chr11 87598045 87598140 -34245716 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1253 252 213 202 9 chr11 87598589 87598698 -34245158 - MIR3 SINE MIR -77 131 2 2 1253 248 343 78 42 chr11 87599981 87600146 -34243710 + L1M5 LINE L1 4741 4912 -1234 2 1253 876 177 0 20 chr11 87600146 87600296 -34243560 + B1_Mur1 SINE Alu 2 148 -1 2 1253 248 343 78 42 chr11 87600296 87600465 -34243391 + L1M5 LINE L1 4913 5087 -1059 2 1253 256 257 86 0 chr11 87600925 87600995 -34242861 + BC1_Mm scRNA scRNA 16 91 -61 2 1253 578 256 103 30 chr11 87601296 87601530 -34242326 - Lx8 LINE L1 -2 7471 7221 2 1253 1789 267 56 29 chr11 87601530 87602081 -34241775 + RLTR20A2 LTR ERVK 1 566 -12 2 1253 225 279 41 68 chr11 87602116 87602189 -34241667 - Lx8 LINE L1 -287 7186 7116 2 1253 274 279 73 0 chr11 87602246 87602314 -34241542 - ID2 SINE ID -8 75 3 2 1253 680 250 99 10 chr11 87602544 87602746 -34241110 - ID_B1 SINE B4 -4 220 1 2 1253 495 0 0 0 chr11 87602869 87602924 -34240932 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1253 3348 169 122 5 chr11 87603090 87603697 -34240159 + RLTR33 LTR ERVK 1 678 0 2 1253 221 0 35 0 chr11 87605032 87605061 -34238795 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1253 255 293 39 39 chr11 87605251 87605354 -34238502 - PB1D10 SINE Alu -10 107 5 2 1253 325 287 11 0 chr11 87605371 87605465 -34238391 + L1M5 LINE L1 5653 5747 -377 2 1253 740 203 0 14 chr11 87605531 87605676 -34238180 + B1_Mur4 SINE Alu 7 149 -1 2 1253 236 323 9 92 chr11 87605907 87606016 -34237840 + PB1D10 SINE Alu 2 101 -16 2 1253 252 143 0 0 chr11 87606031 87606073 -34237783 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 2 1253 1042 88 7 0 chr11 87606077 87606214 -34237642 - B1_Mur4 SINE Alu -12 138 1 2 1253 325 275 0 0 chr11 87606407 87606487 -34237369 - ID_B1 SINE B4 0 224 145 2 1253 555 16 0 0 chr11 87607774 87607838 -34236018 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 2 1253 1415 90 5 5 chr11 87607838 87608019 -34235837 - B2_Mm1a SINE B2 -11 182 1 2 1253 1166 153 41 23 chr11 87608942 87609163 -34234693 + URR1B DNA MER1_type 1 225 0 2 1253 602 71 0 39 chr11 87610308 87610410 -34233446 + (TG)n Simple_repeat Simple_repeat 2 99 0 2 1253 379 185 54 85 chr11 87611534 87611589 -34232267 - MER3 DNA MER1_type -5 204 150 2 1253 802 169 0 57 chr11 87611589 87611736 -34232120 + B1_Mur2 SINE Alu 1 139 -10 2 1253 882 0 0 0 chr11 87611736 87611834 -34232022 + (GAA)n Simple_repeat Simple_repeat 2 99 0 2 1253 415 185 54 85 chr11 87611843 87611917 -34231939 - MER3 DNA MER1_type -60 149 79 2 1253 391 292 45 15 chr11 87612121 87612253 -34231603 - B1F1 SINE Alu -9 140 5 2 1253 247 310 51 8 chr11 87612670 87612787 -34231069 + MER117 DNA MER1_type 30 151 -46 2 1253 568 159 12 50 chr11 87612817 87613084 -34230772 + (TATG)n Simple_repeat Simple_repeat 1 256 0 2 1253 257 0 30 0 chr11 87613800 87613833 -34230023 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 2 1253 443 18 18 0 chr11 87613918 87613974 -34229882 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1253 256 224 35 0 chr11 87614153 87614211 -34229645 - L2b LINE L2 -10 3365 3306 2 1253 223 286 30 20 chr11 87615512 87615647 -34228209 - MIRm SINE MIR -104 158 30 2 1253 437 315 55 14 chr11 87616302 87616447 -34227409 - RSINE1 SINE B4 -13 152 2 2 1253 226 252 43 43 chr11 87617426 87617505 -34226351 + MIR SINE MIR 30 108 -100 2 1253 222 250 88 0 chr11 87617579 87617647 -34226209 - L2a LINE L2 -19 3407 3334 2 1253 502 134 0 0 chr11 87618749 87618816 -34225040 - ID4_ SINE ID -16 67 1 2 1253 391 294 29 0 chr11 87618818 87618920 -34224936 - B1F SINE Alu -1 148 44 2 1253 189 241 0 0 chr11 87618939 87618993 -34224863 + (TTAA)n Simple_repeat Simple_repeat 1 54 0 2 1253 1028 189 87 0 chr11 87619068 87619264 -34224592 - B3 SINE B2 -3 213 1 2 1253 555 179 0 0 chr11 87619275 87619381 -34224475 + CT-rich Low_complexity Low_complexity 3 108 0 2 1253 190 370 78 20 chr11 87619965 87620067 -34223789 - L2a LINE L2 -17 3409 3302 2 1253 2904 107 387 2 chr11 87621158 87621690 -34222166 + RMER19A LTR ERVK 1 737 0 2 1253 745 258 170 12 chr11 87621778 87622025 -34221831 + MTEa LTR MaLR 1 286 -93 2 1253 1647 240 10 35 chr11 87622114 87622515 -34221341 + Lx5 LINE L1 6656 7046 -4 2 1253 376 376 36 20 chr11 87623345 87623554 -34220302 - MIR SINE MIR -3 259 42 2 1253 382 247 25 0 chr11 87623959 87624040 -34219816 - MER117 DNA MER1_type -5 192 110 2 1253 229 317 0 28 chr11 87624170 87624277 -34219579 + L1MDb LINE L1 11 114 -6295 2 1253 370 267 106 29 chr11 87624285 87624389 -34219467 + PB1D9 SINE Alu 7 118 -2 2 1253 290 291 35 11 chr11 87624400 87624416 -34219440 + ID SINE ID 69 86 -138 2 1253 284 287 53 53 chr11 87624416 87624530 -34219326 + PB1D10 SINE Alu 4 117 0 2 1253 567 0 0 0 chr11 87624533 87624596 -34219260 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1253 569 248 0 55 chr11 87624602 87624730 -34219126 + B3A SINE B2 17 137 -61 2 1253 594 0 0 0 chr11 87624865 87624931 -34218925 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1253 794 267 94 14 chr11 87625489 87625702 -34218154 + B4 SINE B4 63 292 0 2 1253 275 242 16 16 chr11 87625771 87625834 -34218022 - ID4_ SINE ID -19 64 2 2 1253 500 239 50 96 chr11 87625853 87626052 -34217804 + L1MDb LINE L1 1085 1274 -5135 2 1253 279 247 59 41 chr11 87626058 87626098 -34217758 + ORR1B1-int LTR MaLR 588 719 -790 2 1253 387 175 25 134 chr11 87626098 87626114 -34217742 + MT2B LTR ERVL 152 154 -447 2 1253 991 123 0 7 chr11 87626114 87626261 -34217595 + B1_Mus1 SINE Alu 1 146 -2 2 1253 390 210 62 117 chr11 87626123 87626285 -34217571 + B4A SINE B4 94 246 -46 2 1253 1156 63 14 14 chr11 87626411 87626556 -34217300 - B1_Mus2 SINE Alu -1 146 2 2 1253 189 0 0 0 chr11 87626556 87626577 -34217279 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1253 399 292 27 36 chr11 87626611 87626721 -34217135 + PB1D10 SINE Alu 1 109 -8 2 1253 807 151 14 25 chr11 87626724 87627393 -34216463 + (CA)n Simple_repeat Simple_repeat 1 661 0 2 1253 322 290 87 24 chr11 87628127 87628254 -34215602 + L1ME4a LINE L1 5975 6109 -15 2 1253 242 296 60 47 chr11 87630205 87630354 -34213502 - MIRb SINE MIR -75 193 43 2 1253 581 0 14 0 chr11 87631579 87631648 -34212208 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1253 1146 48 14 7 chr11 87633016 87633163 -34210693 + B1_Mus1 SINE Alu 1 148 0 2 1253 525 243 54 9 chr11 87633186 87633298 -34210558 - B1_Mur1 SINE Alu -32 117 1 2 1253 231 305 56 105 chr11 87633298 87633355 -34210501 - MT2B LTR ERVL -447 154 105 2 1253 338 333 160 84 chr11 87633961 87634236 -34209620 + LTR16A1 LTR ERVL 158 453 -3 2 1253 1379 151 4 13 chr11 87634796 87635024 -34208832 - URR1A DNA MER1_type 0 226 1 2 1253 593 304 72 51 chr11 87635346 87635687 -34208169 + MLT1C LTR MaLR 60 467 0 2 1253 711 0 0 0 chr11 87636333 87636412 -34207444 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1253 228 200 0 0 chr11 87637006 87637061 -34206795 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1253 391 289 95 40 chr11 87637172 87637320 -34206536 - MER5A1 DNA MER1_type -4 162 7 2 1253 204 40 0 0 chr11 87637744 87637769 -34206087 + (CCA)n Simple_repeat Simple_repeat 3 27 0 2 1253 555 16 0 0 chr11 87637769 87637833 -34206023 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1253 691 284 115 24 chr11 87638070 87638469 -34205387 + MER21B LTR ERV1 323 811 -52 2 1253 590 265 23 0 chr11 87640258 87640390 -34203466 - B1F SINE Alu 0 149 15 2 1253 194 0 39 0 chr11 87640508 87640534 -34203322 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1253 237 215 61 15 chr11 87640664 87640730 -34203126 - ID4 SINE ID -10 73 5 2 1253 1560 11 0 0 chr11 87640754 87640932 -34202924 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 2 1253 279 0 0 0 chr11 87640932 87640963 -34202893 + (TTTCC)n Simple_repeat Simple_repeat 5 35 0 2 1253 838 90 106 8 chr11 87640963 87641086 -34202770 - B1_Mus1 SINE Alu -13 135 1 3 1253 461 113 14 0 chr11 87641087 87641158 -34202698 - 4.5SRNA scRNA scRNA -22 72 1 3 1253 346 108 0 26 chr11 87641506 87641582 -34202274 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1253 724 241 146 5 chr11 87642927 87643119 -34200737 + ID_B1 SINE B4 3 221 -3 3 1253 232 243 128 55 chr11 87643213 87643322 -34200534 + MIR3 SINE MIR 55 171 -37 3 1253 1190 55 14 0 chr11 87643658 87643804 -34200052 + B1_Mur4 SINE Alu 1 148 -2 3 1253 223 28 56 0 chr11 87643804 87643840 -34200016 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1253 493 221 133 0 chr11 87644202 87644315 -34199541 - ID_B1 SINE B4 -62 162 35 3 1253 489 90 320 10 chr11 87644325 87644441 -34199415 - B2_Mm2 SINE B2 0 195 46 3 1253 1292 91 11 0 chr11 87644458 87644634 -34199222 - B2_Mm1t SINE B2 -14 179 2 3 1253 2932 166 33 13 chr11 87645630 87646180 -34197676 + RMER1A Other Other 470 1030 0 3 1253 598 227 129 0 chr11 87646182 87646345 -34197511 + B3 SINE B2 30 213 -3 3 1253 1132 168 69 0 chr11 87646530 87646732 -34197124 - B3 SINE B2 0 216 1 3 1253 492 194 0 0 chr11 87646818 87646947 -34196909 + (TG)n Simple_repeat Simple_repeat 1 129 0 3 1253 917 237 23 0 chr11 87646949 87647126 -34196730 - B3A SINE B2 -16 182 2 3 1253 331 340 0 11 chr11 87647335 87647430 -34196426 - PB1D10 SINE Alu -2 115 22 3 1253 292 228 10 52 chr11 87647539 87647636 -34196220 - L1MC3 LINE L1 -112 7673 7581 3 1253 199 229 0 0 chr11 87648561 87648596 -34195260 - L2b LINE L2 -80 3295 3261 3 1253 1074 220 84 150 chr11 87649149 87649555 -34194301 - MTEa LTR MaLR 0 379 1 3 1253 897 238 108 30 chr11 87649630 87649898 -34193958 + B4A SINE B4 3 291 -1 3 1253 1319 118 113 5 chr11 87649905 87650109 -34193747 + URR1A DNA MER1_type 1 226 0 3 1253 757 262 77 34 chr11 87650300 87650509 -34193347 - B4A SINE B4 -51 241 24 3 1253 214 385 24 8 chr11 87650824 87650947 -34192909 + MER5B DNA MER1_type 49 173 -5 3 1253 371 294 109 0 chr11 87651001 87651120 -34192736 + MER5A1 DNA MER1_type 1 132 -34 3 1253 237 204 0 53 chr11 87651355 87651412 -34192444 + CT-rich Low_complexity Low_complexity 3 56 0 3 1253 444 312 0 0 chr11 87651416 87651528 -34192328 - PB1D10 SINE Alu -5 112 1 3 1253 2148 146 33 47 chr11 87651799 87652293 -34191563 - RLTR28 LTR ERVL -67 457 1 3 1253 204 40 0 0 chr11 87652765 87652790 -34191066 + (TAA)n Simple_repeat Simple_repeat 1 25 0 3 1253 288 259 121 53 chr11 87653273 87653448 -34190408 - ORR1C2 LTR MaLR -142 217 44 3 1253 256 231 105 95 chr11 87653462 87653567 -34190289 - MLT2B2 LTR ERVL -407 108 3 3 1253 1056 268 113 47 chr11 87653825 87654416 -34189440 - L1MC4a LINE L1 -1059 6823 6194 3 1253 315 293 192 24 chr11 87654582 87654963 -34188893 - L1ME1 LINE L1 -148 6031 5587 3 1253 373 253 13 0 chr11 87654969 87655048 -34188808 + B2_Mm1t SINE B2 1 80 -113 3 1253 2390 251 158 27 chr11 87655063 87655837 -34188019 + RMER1B Other Other 2 876 -190 3 1253 4368 155 124 45 chr11 87656049 87656843 -34187013 + RLTR13D2 LTR ERVK 1 878 -145 3 1253 501 97 0 0 chr11 87656843 87656915 -34186941 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1253 4368 155 124 45 chr11 87656915 87657068 -34186788 + RLTR13D2 LTR ERVK 879 1023 0 3 1253 29 0 0 0 chr11 87657663 87657692 -34186164 + AT_rich Low_complexity Low_complexity 1 29 0 3 1253 226 185 56 0 chr11 87657754 87657808 -34186048 - L1M4b LINE L1 -5122 2212 2156 3 1253 1024 136 12 24 chr11 87657872 87658038 -34185818 - B2_Mm2 SINE B2 -31 164 1 3 1253 732 80 88 18 chr11 87658488 87658602 -34185254 + B1_Mur3 SINE Alu 24 145 -4 3 1253 1237 53 0 12 chr11 87658965 87659137 -34184719 + (TTTC)n Simple_repeat Simple_repeat 2 171 0 3 1253 762 268 37 14 chr11 87659539 87659755 -34184101 - ID_B1 SINE B4 -2 222 2 3 1253 672 241 41 0 chr11 87659758 87659922 -34183934 - MER2 DNA MER2_type -128 217 47 3 1253 404 235 0 45 chr11 87659922 87660011 -34183845 + RLTR21 LTR ERVK 1 85 -1487 3 1253 299 153 15 132 chr11 87660022 87660090 -34183766 + RLTR23 LTR ERV1 5 64 -366 3 1253 333 200 128 79 chr11 87660350 87660508 -34183348 + RLTR13D3 LTR ERVK 857 1114 0 3 1253 355 167 0 256 chr11 87660526 87660647 -34183209 + RLTR23 LTR ERV1 50 139 -291 3 1253 681 299 49 46 chr11 87660726 87661052 -34182804 + RLTR23 LTR ERV1 104 430 0 3 1253 4212 182 118 171 chr11 87661052 87662352 -34181504 + RLTR21 LTR ERVK 77 1290 -282 3 1253 297 0 0 0 chr11 87662352 87662385 -34181471 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1253 4212 194 94 117 chr11 87662385 87662582 -34181274 + RLTR21 LTR ERVK 1285 1434 -138 3 1253 238 333 15 120 chr11 87662501 87662634 -34181222 - MER2 DNA MER2_type -226 119 1 3 1253 2715 59 80 60 chr11 87662809 87663222 -34180634 - BGLII LTR ERVK 0 421 1 3 1253 572 114 274 26 chr11 87663261 87663378 -34180478 + B1_Mus1 SINE Alu 2 147 -1 3 1253 780 134 18 0 chr11 87663398 87663510 -34180346 + PB1D9 SINE Alu 1 114 -6 3 1253 209 33 33 0 chr11 87663513 87663543 -34180313 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1253 247 286 37 48 chr11 87663860 87663902 -34179954 + RMER1B Other Other 409 447 -619 3 1253 450 0 0 0 chr11 87663902 87663952 -34179904 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1253 3325 169 19 6 chr11 87663952 87664558 -34179298 + RMER1A Other Other 275 875 -155 3 1253 414 0 0 0 chr11 87664558 87664604 -34179252 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1253 599 237 136 7 chr11 87664793 87664933 -34178923 - RSINE1 SINE B4 -5 160 3 3 1253 238 279 58 11 chr11 87665256 87665343 -34178513 + MIRb SINE MIR 109 199 -69 3 1253 200 234 0 30 chr11 87665784 87665795 -34178061 + T-rich Low_complexity Low_complexity 55 65 0 3 1253 1004 151 0 6 chr11 87665795 87665975 -34177881 + CT-rich Low_complexity Low_complexity 2 180 0 3 1253 200 234 0 30 chr11 87665975 87665999 -34177857 + T-rich Low_complexity Low_complexity 31 54 0 3 1253 1222 47 0 7 chr11 87665999 87666148 -34177708 - B1_Mus1 SINE Alu 0 148 1 3 1253 200 234 0 30 chr11 87666148 87666177 -34177679 + T-rich Low_complexity Low_complexity 2 30 0 3 1253 529 249 190 16 chr11 87666227 87666411 -34177445 - B3 SINE B2 0 216 1 3 1253 247 253 8 8 chr11 87667411 87667507 -34176349 - MIRc SINE MIR -127 141 42 3 1253 33 0 0 0 chr11 87667510 87667543 -34176313 + AT_rich Low_complexity Low_complexity 1 33 0 3 1253 421 279 0 28 chr11 87667559 87667666 -34176190 - RSINE1 SINE B4 -2 163 60 3 1253 290 270 63 0 chr11 87668261 87668372 -34175484 + PB1D7 SINE Alu 1 118 -2 3 1253 188 343 68 10 chr11 87668724 87668827 -34175029 + MIR3 SINE MIR 93 201 -7 3 1253 197 275 189 8 chr11 87671673 87671805 -34172051 - MIRb SINE MIR -89 179 24 3 1253 424 257 35 17 chr11 87671840 87671955 -34171901 - B1F SINE Alu -10 139 23 3 1253 799 141 67 0 chr11 87673331 87673466 -34170390 + B1_Mur4 SINE Alu 2 145 -5 3 1253 231 36 0 0 chr11 87673488 87673516 -34170340 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 3 1253 321 310 90 14 chr11 87673686 87673830 -34170026 + L2 LINE L2 1962 2116 -1303 3 1253 305 301 118 70 chr11 87675180 87675409 -34168447 - MIRb SINE MIR -28 240 1 3 1253 927 143 0 13 chr11 87676893 87677042 -34166814 + B1_Mur2 SINE Alu 1 147 -2 3 1253 981 254 51 36 chr11 87679394 87679668 -34164188 - B4 SINE B4 0 292 15 3 1253 3709 29 0 0 chr11 87680088 87680535 -34163321 + L1Md_A LINE L1 6136 6582 0 3 1253 671 262 79 37 chr11 87680629 87680684 -34163172 + B4 SINE B4 31 95 -197 3 1253 288 0 0 0 chr11 87680684 87680716 -34163140 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1253 671 262 79 37 chr11 87680716 87680850 -34163006 + B4 SINE B4 96 228 -64 3 1253 818 144 13 52 chr11 87680850 87681004 -34162852 + B1_Mus1 SINE Alu 1 148 0 3 1253 390 74 0 0 chr11 87681025 87681079 -34162777 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 1253 367 269 8 65 chr11 87682383 87682506 -34161350 + PB1D10 SINE Alu 2 117 0 3 1253 293 267 13 51 chr11 87682511 87682590 -34161266 + ID4 SINE ID 7 82 -1 3 1253 305 347 51 11 chr11 87684077 87684252 -34159604 + MIRb SINE MIR 8 189 -79 3 1253 351 0 0 0 chr11 87684416 87684455 -34159401 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1253 324 242 0 0 chr11 87685224 87685290 -34158566 - BC1_Mm scRNA scRNA -85 67 2 3 1253 207 224 0 0 chr11 87685608 87685684 -34158172 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1253 569 227 39 0 chr11 87686484 87686612 -34157244 + B1F SINE Alu 10 142 -7 3 1253 519 259 17 0 chr11 87686958 87687074 -34156782 + B1F SINE Alu 3 120 -29 3 156 823 275 66 18 chr11 87687094 87687368 -34156488 + B4A SINE B4 1 287 -5 3 1254 222 235 20 0 chr11 87687423 87687474 -34156382 + GA-rich Low_complexity Low_complexity 1 52 0 3 1254 206 237 80 70 chr11 87687598 87687698 -34156158 - MIRb SINE MIR -122 146 46 3 1254 304 298 67 9 chr11 87689438 87689543 -34154313 + L2b LINE L2 3265 3375 0 3 1254 752 177 23 0 chr11 87691837 87692012 -34151844 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 1254 303 261 57 0 chr11 87692029 87692117 -34151739 + ID_B1 SINE B4 132 224 0 3 1254 257 255 85 38 chr11 87692253 87692359 -34151497 - PB1D7 SINE Alu -9 111 1 3 1254 249 254 42 26 chr11 87692434 87692536 -34151320 + B1F1 SINE Alu 3 116 -1 3 1254 934 186 11 0 chr11 87692636 87692813 -34151043 + B3A SINE B2 2 180 -18 3 1254 630 306 213 23 chr11 87692883 87693014 -34150842 - MER97b DNA MER1_type? -439 614 481 3 1254 973 227 18 36 chr11 87693014 87693238 -34150618 - ID_B1 SINE B4 0 224 5 3 1254 630 306 213 23 chr11 87693238 87693547 -34150309 - MER97b DNA MER1_type? -573 480 90 3 1254 186 277 218 0 chr11 87694943 87695044 -34148812 + L2b LINE L2 3082 3204 -171 4 1254 462 223 3 3 chr11 87695688 87696017 -34147839 + (TG)n Simple_repeat Simple_repeat 1 329 0 4 1254 387 0 0 0 chr11 87696042 87696085 -34147771 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1254 510 31 0 0 chr11 87696085 87696148 -34147708 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1254 195 206 36 77 chr11 87696211 87696310 -34147546 + MIRc SINE MIR 28 122 -146 4 1254 290 298 185 0 chr11 87696613 87696791 -34147065 + B3 SINE B2 2 212 -4 4 1254 355 250 198 0 chr11 87696793 87696889 -34146967 - B1_Mur2 SINE Alu -34 115 1 4 1254 498 172 5 16 chr11 87696889 87696974 -34146882 - B1_Mus1 SINE Alu -38 82 2 4 1254 299 233 11 85 chr11 87696890 87696984 -34146872 - MT2B2 LTR ERVL -343 241 155 4 1254 322 284 114 43 chr11 87696989 87697129 -34146727 + B4A SINE B4 85 234 -58 4 1254 400 267 8 41 chr11 87697151 87697272 -34146584 + B3A SINE B2 82 198 0 4 1254 308 289 0 13 chr11 87697280 87697357 -34146499 + B4 SINE B4 217 292 0 4 1254 6566 75 15 1 chr11 87697441 87698363 -34145493 + Lx3_Mus LINE L1 6075 7009 0 4 1254 282 73 0 0 chr11 87699037 87699078 -34144778 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1254 288 0 0 0 chr11 87699078 87699109 -34144747 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1254 180 0 0 0 chr11 87699114 87699134 -34144722 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 4 1254 374 225 133 0 chr11 87699177 87699297 -34144559 - MER97b DNA MER1_type? -880 173 38 3 1254 2500 144 45 2 chr11 87699963 87700367 -34143489 + MTC LTR MaLR 1 421 0 4 1254 840 296 25 8 chr11 87700651 87700886 -34142970 - B4A SINE B4 -4 288 50 4 1254 330 220 97 29 chr11 87701998 87702101 -34141755 - ORR1E LTR MaLR -36 343 234 4 1254 345 339 103 40 chr11 87702087 87702339 -34141517 - ORR1E LTR MaLR -91 268 1 4 1254 207 0 0 0 chr11 87703757 87703780 -34140076 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1254 326 61 20 0 chr11 87705036 87705085 -34138771 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1254 30 27 0 0 chr11 87706079 87706116 -34137740 + AT_rich Low_complexity Low_complexity 1 37 0 4 1254 333 302 163 54 chr11 87706120 87706152 -34137704 - RSINE1 SINE B4 0 165 141 4 1254 315 0 0 0 chr11 87706152 87706187 -34137669 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1254 333 302 163 54 chr11 87706187 87706301 -34137555 - RSINE1 SINE B4 -25 140 3 4 1254 470 241 9 0 chr11 87707647 87707755 -34136101 - PB1D10 SINE Alu -1 116 8 4 1254 1658 152 20 23 chr11 87708342 87708645 -34135211 - MTC LTR MaLR -8 413 112 4 1254 489 198 21 0 chr11 87708963 87709059 -34134797 - MTC LTR MaLR -323 98 1 4 1254 785 237 20 45 chr11 87710981 87711180 -34132676 + B3A SINE B2 2 195 -3 4 1254 1389 86 0 0 chr11 87711374 87711666 -34132190 + (TTC)n Simple_repeat Simple_repeat 1 292 0 4 1254 291 160 8 16 chr11 87712398 87712516 -34131340 + CT-rich Low_complexity Low_complexity 1 117 0 4 1254 555 192 29 0 chr11 87712516 87712620 -34131236 - B1_Mur4 SINE Alu -1 149 43 4 1254 773 217 0 53 chr11 87712638 87712868 -34130988 + (TCTCTG)n Simple_repeat Simple_repeat 1 217 0 4 1254 222 19 289 0 chr11 87712791 87712895 -34130961 + (CCTG)n Simple_repeat Simple_repeat 2 135 0 4 1254 247 273 0 35 chr11 87712895 87712952 -34130904 - B1_Mur4 SINE Alu -95 55 1 4 1254 230 300 25 0 chr11 87713580 87713660 -34130196 - MLT1A0 LTR MaLR -283 82 1 4 1254 910 127 0 60 chr11 87713774 87713925 -34129931 + B1_Mur3 SINE Alu 2 143 -6 4 1254 969 163 0 15 chr11 87713928 87714194 -34129662 + (CA)n Simple_repeat Simple_repeat 1 262 0 4 1254 304 141 14 99 chr11 87714197 87714268 -34129588 + HAL1-3A_ME LINE L1 1976 2040 -818 4 1254 1446 54 16 0 chr11 87714386 87714570 -34129286 - B2_Mm2 SINE B2 -8 187 1 4 1254 1869 175 347 2 chr11 87714587 87715108 -34128748 - RMER1B Other Other -9 1057 357 4 1254 329 314 15 14 chr11 87715114 87715261 -34128595 - L1_Mur3 LINE L1 -699 5604 5446 4 1254 375 23 0 0 chr11 87715262 87715306 -34128550 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1254 342 260 60 0 chr11 87715307 87715407 -34128449 - B1_Mur2 SINE Alu -2 147 42 4 1254 246 174 0 0 chr11 87715911 87715957 -34127899 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1254 597 294 10 78 chr11 87715976 87716127 -34127729 - B3 SINE B2 -36 180 42 4 1254 1410 38 49 0 chr11 87716127 87716311 -34127545 - B2_Mm1a SINE B2 0 193 1 4 1254 597 294 10 78 chr11 87716311 87716351 -34127505 - B3 SINE B2 -175 41 2 4 1254 3793 32 0 13 chr11 87716639 87717114 -34126742 - L1Md_F2 LINE L1 -2 6580 6112 4 1254 2172 59 0 3 chr11 87717127 87717416 -34126440 - L1_Mus4 LINE L1 -7 6629 6342 4 1254 404 216 0 70 chr11 87717460 87717606 -34126250 - L1P5 LINE L1 -670 5486 5348 4 1254 986 126 78 0 chr11 87717661 87717828 -34126028 - B2_Mm2 SINE B2 0 195 16 4 1254 1993 203 55 89 chr11 87717841 87718370 -34125486 - RMER1B Other Other -554 512 2 4 1254 282 337 127 54 chr11 87719012 87719272 -34124584 + MLT1J LTR MaLR 233 511 -1 4 1254 1068 75 0 0 chr11 87719794 87719940 -34123916 + B1_Mus2 SINE Alu 2 147 0 4 1254 897 187 8 86 chr11 87720992 87721226 -34122630 + B3 SINE B2 1 216 0 4 1254 364 340 21 0 chr11 87721331 87721475 -34122381 - MER5A DNA MER1_type -28 161 15 4 1254 540 172 8 15 chr11 87721534 87721590 -34122266 + polypyrimidine Low_complexity Low_complexity 77 131 0 4 1254 1092 101 6 11 chr11 87721590 87721770 -34122086 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 4 1254 540 172 8 15 chr11 87721770 87721843 -34122013 + polypyrimidine Low_complexity Low_complexity 4 76 0 4 1254 368 331 26 0 chr11 87722198 87722349 -34121507 - L1_Mur3 LINE L1 -4408 1472 1318 4 1254 362 291 112 35 chr11 87723497 87723836 -34120020 - MLT1A0 LTR MaLR 0 365 1 4 1254 324 248 55 0 chr11 87723836 87723939 -34119917 + L1MD2 LINE L1 6247 6355 -4 4 1254 284 95 13 51 chr11 87723980 87724058 -34119798 + T-rich Low_complexity Low_complexity 2 76 0 4 1254 572 233 8 8 chr11 87724089 87724219 -34119637 - B1_Mur2 SINE Alu -14 135 6 4 1254 744 294 20 0 chr11 87724508 87724709 -34119147 + ID_B1 SINE B4 2 206 -18 4 1254 189 107 0 0 chr11 87724709 87724737 -34119119 + (ATGGTG)n Simple_repeat Simple_repeat 5 32 0 4 1254 221 0 0 33 chr11 87724947 87724977 -34118879 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1254 1107 80 0 0 chr11 87724977 87725115 -34118741 - B1_Mus1 SINE Alu -10 138 1 4 1254 236 329 127 54 chr11 87725378 87725638 -34118218 + MLT1J LTR MaLR 233 511 -1 4 1254 291 28 0 0 chr11 87726535 87726571 -34117285 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1254 639 0 0 0 chr11 87726571 87726641 -34117215 + (GA)n Simple_repeat Simple_repeat 1 71 0 4 1254 1946 198 105 7 chr11 87726688 87727080 -34116776 + RLTR20C LTR ERVK 1 432 -102 4 1254 249 108 0 0 chr11 87727080 87727117 -34116739 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1254 1946 198 105 7 chr11 87727117 87727162 -34116694 + RLTR20C LTR ERVK 433 480 -54 4 1254 503 298 72 10 chr11 87727171 87727378 -34116478 - B4 SINE B4 -71 221 2 4 1254 219 36 0 0 chr11 87728490 87728518 -34115338 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 4 1254 956 160 0 0 chr11 87729020 87729170 -34114686 + B1_Mur4 SINE Alu 1 150 0 4 1254 387 0 0 0 chr11 87729327 87729370 -34114486 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1254 314 62 0 20 chr11 87729388 87729437 -34114419 - HAL1-3A_ME LINE L1 -830 2028 1981 4 1254 609 14 0 0 chr11 87729471 87729541 -34114315 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1254 747 245 72 12 chr11 87729685 87729894 -34113962 + B3A SINE B2 1 216 0 4 1254 438 112 150 0 chr11 87730115 87730195 -34113661 + B1_Mus2 SINE Alu 49 140 -7 4 1254 220 111 44 0 chr11 87730206 87730251 -34113605 + GA-rich Low_complexity Low_complexity 3 49 0 4 1254 1565 5 0 10 chr11 87730252 87730457 -34113399 + (GGGAA)n Simple_repeat Simple_repeat 1 202 0 4 1254 330 280 108 34 chr11 87730476 87730624 -34113232 + RSINE1 SINE B4 3 161 -4 4 1254 341 179 0 0 chr11 87730769 87730825 -34113031 + B4A SINE B4 230 285 -7 4 1254 420 250 145 0 chr11 87731810 87731934 -34111922 - B1F SINE Alu -7 142 1 4 1254 315 0 0 0 chr11 87732300 87732335 -34111521 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1254 214 347 0 0 chr11 87732973 87733048 -34110808 - MIRb SINE MIR -15 253 179 4 1254 289 291 35 12 chr11 87734966 87735061 -34108795 - B1F SINE Alu -33 116 20 4 1254 955 208 68 15 chr11 87735146 87735351 -34108505 - B3 SINE B2 0 216 1 4 1254 907 182 0 0 chr11 87735380 87735523 -34108333 + B1_Mus1 SINE Alu 1 143 -5 4 1254 2104 266 92 21 chr11 87735534 87736131 -34107725 - L1MB7 LINE L1 -58 6126 5487 4 1254 1575 201 82 9 chr11 87736131 87736473 -34107383 - ORR1D2 LTR MaLR -3 367 1 4 1254 2104 266 92 21 chr11 87736473 87736630 -34107226 - L1MB7 LINE L1 -698 5486 5318 4 1254 1207 56 0 0 chr11 87736630 87736774 -34107082 - B1_Mus2 SINE Alu 0 147 4 4 1254 2104 194 9 97 chr11 87736774 87736797 -34107059 - L1MB7 LINE L1 -829 5317 5299 4 1254 288 293 0 35 chr11 87736797 87736882 -34106974 - ID4 SINE ID 0 83 2 4 1254 270 194 9 97 chr11 87736882 87736902 -34106954 - L1MB7 LINE L1 -848 5298 5285 4 1254 620 256 31 18 chr11 87736982 87737145 -34106711 + RSINE1 SINE B4 1 165 0 4 1254 903 184 0 0 chr11 87737148 87737469 -34106387 + (CA)n Simple_repeat Simple_repeat 1 321 0 4 1254 1445 60 16 5 chr11 87737535 87737719 -34106137 - B2_Mm2 SINE B2 -8 187 2 4 1254 375 268 20 10 chr11 87737783 87737881 -34105975 - PB1D10 SINE Alu -7 110 12 4 1254 238 200 21 21 chr11 87738340 87738356 -34105500 + ORR1B1-int LTR MaLR 630 645 -864 4 1254 629 140 67 3 chr11 87738356 87738478 -34105378 + B1_Mur3 SINE Alu 1 120 0 4 1254 474 295 40 25 chr11 87738479 87738816 -34105040 + L1_Mur3 LINE L1 1412 1755 -4125 4 1254 641 335 51 23 chr11 87738795 87739146 -34104710 + L1MA4 LINE L1 2398 2758 -3385 4 1254 633 115 0 0 chr11 87739146 87739242 -34104614 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 4 1254 203 81 54 0 chr11 87739256 87739293 -34104563 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 5 1254 420 291 127 9 chr11 87739300 87739529 -34104327 + L1MA4 LINE L1 2783 3038 -3105 4 1254 513 282 36 46 chr11 87739519 87739738 -34104118 + L1MA4 LINE L1 5351 5567 -733 4 1254 856 264 15 42 chr11 87739739 87740071 -34103785 - RLTR15 LTR ERVK -36 323 1 5 1254 544 272 100 30 chr11 87740074 87740292 -34103564 + L1MA4 LINE L1 5547 5781 -408 4 1254 510 222 36 109 chr11 87740292 87740484 -34103372 + B3A SINE B2 5 182 -16 5 1254 544 274 125 114 chr11 87740484 87740635 -34103221 + L1MA4 LINE L1 5767 5918 -382 4 1254 755 138 8 217 chr11 87740852 87741092 -34102764 + B2_Mm2 SINE B2 4 193 -2 5 1254 981 264 89 24 chr11 87741111 87741483 -34102373 - L1M4 LINE L1 -1111 5035 4640 5 1254 243 234 0 45 chr11 87741547 87741614 -34102242 - B4A SINE B4 -226 66 3 5 1254 382 250 103 0 chr11 87741628 87741744 -34102112 - B1F SINE Alu -21 128 1 5 1254 1338 54 0 0 chr11 87741794 87742035 -34101821 + (TG)n Simple_repeat Simple_repeat 1 241 0 5 1254 189 0 0 0 chr11 87742078 87742099 -34101757 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 5 1254 776 244 70 56 chr11 87742118 87742288 -34101568 - B3 SINE B2 0 216 38 5 1254 2396 160 68 12 chr11 87742288 87742687 -34101169 - MTC LTR MaLR 0 421 1 5 1254 776 244 70 56 chr11 87742687 87742729 -34101127 - B3 SINE B2 -179 37 1 5 1254 269 308 120 0 chr11 87742805 87742922 -34100934 - MLT1A1 LTR MaLR -277 131 1 5 1254 274 307 145 13 chr11 87742929 87743124 -34100732 + MLT1A1 LTR MaLR 155 407 -1 5 1254 242 79 26 0 chr11 87743368 87743406 -34100450 + B3A SINE B2 1 39 -159 5 1254 513 0 0 0 chr11 87743444 87743501 -34100355 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 5 1254 397 62 34 0 chr11 87743517 87743580 -34100276 - B2_Mm2 SINE B2 -83 115 46 5 1254 1198 95 65 0 chr11 87743607 87743776 -34100080 - B2_Mm2 SINE B2 -14 181 2 5 1254 1675 263 23 20 chr11 87743816 87744255 -34099601 - RMER19C LTR ERVK -34 577 138 5 1254 501 202 48 0 chr11 87744293 87744397 -34099459 + B3 SINE B2 33 141 -75 5 1254 339 256 16 32 chr11 87744647 87744772 -34099084 + L1MD2 LINE L1 803 925 -5622 5 1254 850 27 0 18 chr11 87744774 87744887 -34098969 + B1_Mus2 SINE Alu 27 137 -10 5 1254 1071 64 0 0 chr11 87744887 87745027 -34098829 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 5 1254 468 0 0 0 chr11 87745027 87745079 -34098777 + (GGAGA)n Simple_repeat Simple_repeat 2 53 0 5 1254 1242 0 0 0 chr11 87745079 87745217 -34098639 + (GGAAA)n Simple_repeat Simple_repeat 2 139 0 5 1254 309 263 24 63 chr11 87745316 87745442 -34098414 + L1MD2 LINE L1 1070 1190 -5357 5 1254 1185 184 347 61 chr11 87745666 87746107 -34097749 + RMER2 LTR ERV1 1 567 0 5 1254 279 71 0 0 chr11 87746365 87746407 -34097449 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 1254 586 130 20 0 chr11 87746410 87746510 -34097346 - B1_Mus2 SINE Alu -1 146 45 5 1254 186 43 0 0 chr11 87746836 87746859 -34096997 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1254 3742 231 113 6 chr11 87746927 87747821 -34096035 - RMER1A Other Other 0 1030 41 5 1254 1956 215 40 106 chr11 87747821 87748668 -34095188 - RMER1A Other Other -560 506 1 5 1254 1082 171 14 54 chr11 87748903 87749125 -34094731 - URR1A DNA MER1_type -13 213 1 5 1254 570 270 38 32 chr11 87749268 87749425 -34094431 + RSINE1 SINE B4 8 165 0 5 1254 3315 48 2 5 chr11 87749459 87749856 -34094000 + MTA_Mm LTR MaLR 1 396 0 5 1254 629 139 17 34 chr11 87749924 87750043 -34093813 - B1_Mur4 SINE Alu -4 146 30 5 1254 641 222 19 7 chr11 87750060 87750214 -34093642 - RMER15 LTR ERVL -124 451 296 5 1254 259 338 105 3 chr11 87750540 87750675 -34093181 - MIR3 SINE MIR -45 163 16 5 1254 486 0 0 0 chr11 87751128 87751182 -34092674 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1254 788 160 21 7 chr11 87751188 87751333 -34092523 - B3A SINE B2 -51 147 1 5 1254 579 242 324 11 chr11 87751333 87751689 -34092167 - MTE-int LTR MaLR -134 1446 976 5 1254 1101 228 148 31 chr11 87751743 87752100 -34091756 - Lx8 LINE L1 -294 7179 6781 5 1254 352 241 101 0 chr11 87752135 87752214 -34091642 + B1_Mur3 SINE Alu 4 90 -59 5 1254 1356 79 39 0 chr11 87752290 87752468 -34091388 + B2_Mm2 SINE B2 2 186 -9 5 1254 207 0 0 0 chr11 87752473 87752496 -34091360 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1254 279 250 0 81 chr11 87752497 87752571 -34091285 + B1_Mus2 SINE Alu 6 73 -74 5 1254 292 280 154 29 chr11 87752569 87752705 -34091151 + B4A SINE B4 58 210 -82 5 1254 471 78 0 0 chr11 87752745 87752809 -34091047 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1254 418 268 27 112 chr11 87752816 87753093 -34090763 + Lx8 LINE L1 5358 5607 -693 5 1254 3231 169 87 45 chr11 87753106 87753793 -34090063 + RMER1B Other Other 351 1066 0 5 1254 1015 271 70 17 chr11 87753792 87754140 -34089716 + Lx8 LINE L1 5587 5927 -1546 5 1254 216 0 0 0 chr11 87754149 87754173 -34089683 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1254 1167 41 14 20 chr11 87754185 87754333 -34089523 - B1_Mm SINE Alu 0 147 1 5 1254 432 298 0 11 chr11 87754510 87754529 -34089327 + (CA)n Simple_repeat Simple_repeat 1 19 0 5 1254 249 57 0 0 chr11 87754529 87754564 -34089292 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 1254 432 298 0 11 chr11 87754564 87754693 -34089163 + (CA)n Simple_repeat Simple_repeat 2 129 0 5 1254 243 0 0 0 chr11 87754693 87754720 -34089136 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1254 248 287 0 44 chr11 87754720 87754786 -34089070 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5 1254 592 231 55 73 chr11 87754945 87755164 -34088692 + B3 SINE B2 1 215 -1 5 1254 1807 156 114 22 chr11 87755190 87755551 -34088305 - ORR1B1 LTR MaLR 0 394 1 5 1254 386 198 44 114 chr11 87755990 87756104 -34087752 + MurERV4-int LTR ERVK 1 106 -5154 5 1254 336 172 118 65 chr11 87756127 87756220 -34087636 + MurERV4-int LTR ERVK 99 196 -5064 5 1254 654 13 0 0 chr11 87756256 87756326 -34087530 + (TTC)n Simple_repeat Simple_repeat 1 70 0 5 1254 1380 56 0 0 chr11 87756326 87756504 -34087352 + (TCC)n Simple_repeat Simple_repeat 3 180 0 5 1254 654 13 0 0 chr11 87756504 87756510 -34087346 + (TTC)n Simple_repeat Simple_repeat 1 6 0 5 1254 5758 142 72 48 chr11 87756510 87757346 -34086510 + MurERV4-int LTR ERVK 177 1079 -4181 5 1254 1192 55 14 0 chr11 87757346 87757491 -34086365 + B1_Mus2 SINE Alu 1 147 0 5 1254 5758 142 72 48 chr11 87757491 87757704 -34086152 + MurERV4-int LTR ERVK 1080 1252 -4008 5 1254 721 95 9 0 chr11 87757790 87757895 -34085961 - B2_Mm2 SINE B2 -85 110 5 5 1254 1371 90 26 5 chr11 87758391 87758581 -34085275 + B2_Mm2 SINE B2 2 195 0 5 1254 1941 125 48 28 chr11 87758924 87759277 -34084579 + Lx LINE L1 6290 6649 -5 5 1254 3106 142 10 8 chr11 87760061 87760545 -34083311 + MurERV4-int LTR ERVK 1251 1735 -3525 5 1254 1776 122 94 0 chr11 87760547 87760834 -34083022 + MurERV4-int LTR ERVK 4944 5257 -3 5 1254 2673 118 54 52 chr11 87760836 87760898 -34082958 + RMER4A LTR ERVK 1 48 -418 5 1254 1144 89 95 0 chr11 87760898 87761066 -34082790 + B2_Mm1a SINE B2 1 184 -9 5 1254 2673 118 54 52 chr11 87761066 87761468 -34082388 + RMER4A LTR ERVK 49 466 0 5 1254 263 229 0 0 chr11 87761474 87761522 -34082334 - PB1D9 SINE Alu -69 51 4 5 1254 4000 133 110 18 chr11 87762291 87763057 -34080799 - RMER13A LTR ERVK -24 836 1 5 1254 332 273 149 48 chr11 87763157 87763365 -34080491 + L1M2 LINE L1 2827 3055 -3088 5 1254 566 176 0 8 chr11 87763738 87763858 -34079998 + GA-rich Low_complexity Low_complexity 2 120 0 5 1254 940 202 75 5 chr11 87763860 87764059 -34079797 + B3 SINE B2 4 216 0 5 1254 909 175 0 0 chr11 87764084 87764255 -34079601 + GA-rich Low_complexity Low_complexity 2 172 0 5 1254 464 212 0 0 chr11 87764853 87764980 -34078876 + B3 SINE B2 6 214 -2 5 1254 296 201 96 48 chr11 87764987 87765113 -34078743 + L1M2 LINE L1 5124 5252 -891 5 1254 1188 56 0 0 chr11 87765113 87765255 -34078601 + B1_Mus2 SINE Alu 1 142 -5 5 1254 296 201 96 48 chr11 87765255 87765274 -34078582 + L1M2 LINE L1 5253 5276 -867 5 1254 2359 131 32 103 chr11 87765333 87765801 -34078055 + Lx4A LINE L1 6624 7058 0 5 1254 1227 34 0 7 chr11 87765809 87765948 -34077908 + B1_Mus2 SINE Alu 1 139 -8 5 1254 375 73 0 0 chr11 87765948 87766003 -34077853 + (CAAT)n Simple_repeat Simple_repeat 2 56 0 5 1254 1195 61 0 0 chr11 87766035 87766183 -34077673 + B1_Mus1 SINE Alu 1 148 0 5 1254 424 188 0 24 chr11 87766183 87766265 -34077591 + ID_B1 SINE B4 143 222 -2 5 1254 1181 90 84 0 chr11 87766284 87766451 -34077405 + B2_Mm2 SINE B2 1 181 -14 5 1254 342 83 361 9 chr11 87766496 87766604 -34077252 + B2_Mm2 SINE B2 47 192 -3 5 1254 262 291 87 0 chr11 87766757 87766860 -34076996 + L1ME1 LINE L1 6061 6172 -7 5 1254 235 139 0 0 chr11 87766876 87766919 -34076937 + U5 snRNA snRNA 1 43 -73 5 1254 327 197 36 36 chr11 87767106 87767243 -34076613 + (TG)n Simple_repeat Simple_repeat 1 137 0 5 1254 351 116 40 32 chr11 87767320 87767445 -34076411 + (TG)n Simple_repeat Simple_repeat 1 126 0 5 1254 583 158 11 33 chr11 87767488 87767592 -34076264 + (TG)n Simple_repeat Simple_repeat 1 100 0 5 1254 3292 31 34 5 chr11 87767592 87767977 -34075879 + MTA_Mm LTR MaLR 1 396 0 5 1254 583 158 11 33 chr11 87767977 87768055 -34075801 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1254 311 167 33 49 chr11 87768110 87768293 -34075563 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1254 578 256 218 15 chr11 87768337 87768539 -34075317 - B4 SINE B4 -21 271 29 5 1254 332 309 109 89 chr11 87768799 87769042 -34074814 + Kanga1d DNA Tc2 89 321 -288 5 1254 651 245 14 0 chr11 87769042 87769181 -34074675 + B1F1 SINE Alu 4 144 -5 5 1254 332 309 109 89 chr11 87769181 87769296 -34074560 + Kanga1d DNA Tc2 322 454 -155 5 1254 1372 233 36 25 chr11 87769319 87769675 -34074181 + MTE2b LTR MaLR 18 377 -2 5 1254 204 158 0 0 chr11 87769766 87769804 -34074052 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 5 1254 21 57 0 0 chr11 87769947 87769982 -34073874 + AT_rich Low_complexity Low_complexity 1 35 0 5 1254 786 261 38 41 chr11 87770136 87770480 -34073376 + RLTR15 LTR ERVK 1 343 -16 5 1254 1414 178 197 15 chr11 87770841 87770992 -34072864 + ORR1C2 LTR MaLR 1 171 -213 5 1254 498 17 0 0 chr11 87770992 87771051 -34072805 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1254 1414 178 197 15 chr11 87771051 87771224 -34072632 + ORR1C2 LTR MaLR 172 383 -1 5 1254 2959 134 65 6 chr11 87771230 87771725 -34072131 + RLTR11A LTR ERVK 1 524 -4 5 1254 1101 110 0 0 chr11 87771829 87771974 -34071882 + B1_Mus2 SINE Alu 3 147 0 5 1254 217 0 61 0 chr11 87771981 87772014 -34071842 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1254 1436 192 177 11 chr11 87772122 87772578 -34071278 - MT2A LTR ERVL -1 532 1 5 1254 959 188 124 10 chr11 87772849 87773043 -34070813 - B3 SINE B2 0 216 1 6 1254 917 78 205 13 chr11 87773062 87773218 -34070638 + B2_Mm1a SINE B2 1 186 -7 6 1254 624 156 0 0 chr11 87773261 87773370 -34070486 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 1254 673 119 127 0 chr11 87773370 87773493 -34070363 + MTD LTR MaLR 201 339 -80 6 1254 242 154 0 0 chr11 87773493 87773532 -34070324 + B1_Mus1 SINE Alu 1 39 -109 6 1254 771 300 0 21 chr11 87773707 87773901 -34069955 + B3A SINE B2 3 192 -6 6 1254 2000 137 29 0 chr11 87774050 87774394 -34069462 + ORR1B1 LTR MaLR 1 354 -40 6 1254 1201 48 0 14 chr11 87774395 87774543 -34069313 + B1_Mm SINE Alu 2 147 0 6 1254 183 152 0 0 chr11 87774543 87774589 -34069267 + A-rich Low_complexity Low_complexity 1 46 0 6 1254 322 85 0 0 chr11 87774589 87774636 -34069220 + ORR1A1 LTR MaLR 292 338 -8 6 1254 260 299 35 0 chr11 87775694 87775781 -34068075 - MLT1I LTR MaLR -230 181 92 6 1254 206 77 0 49 chr11 87775933 87775974 -34067882 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1254 395 136 0 0 chr11 87776103 87776169 -34067687 - ORR1B1 LTR MaLR -1 393 328 6 1254 4885 192 16 16 chr11 87776166 87776337 -34067519 - ORR1B1-int LTR MaLR -446 1063 904 6 1254 1482 47 5 20 chr11 87776337 87776532 -34067324 - B2_Mm1a SINE B2 -1 192 1 6 1254 4885 192 16 16 chr11 87776532 87777423 -34066433 - ORR1B1-int LTR MaLR -606 903 1 6 1254 180 0 0 0 chr11 87777443 87777463 -34066393 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1254 1251 37 0 6 chr11 87777463 87777626 -34066230 - B2_Mm2 SINE B2 -33 162 1 6 1254 249 188 76 30 chr11 87777634 87777700 -34066156 - ORR1B1 LTR MaLR 0 394 326 6 1254 449 204 93 93 chr11 87777680 87777831 -34066025 + B4A SINE B4 74 224 -68 6 1254 1084 59 0 0 chr11 87777699 87777834 -34066022 + B1_Mus1 SINE Alu 14 148 0 6 1254 180 0 0 0 chr11 87777834 87777854 -34066002 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1254 387 0 0 0 chr11 87777858 87777901 -34065955 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1254 1589 135 170 3 chr11 87777904 87778187 -34065669 - ORR1B1 LTR MaLR -64 330 1 6 1254 293 148 20 206 chr11 87778648 87778750 -34065106 - ID_B1 SINE B4 0 224 142 6 1254 412 125 11 139 chr11 87778660 87778762 -34065094 - B1_Mur1 SINE Alu -6 143 55 6 1254 224 146 36 0 chr11 87779100 87779155 -34064701 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 6 1254 281 271 274 13 chr11 87779575 87779732 -34064124 + MIRb SINE MIR 13 210 -58 6 1254 377 297 17 0 chr11 87780396 87780514 -34063342 + L1MEc LINE L1 359 478 -5922 6 1254 498 231 110 92 chr11 87780644 87780786 -34063070 + B4 SINE B4 49 230 -62 6 1254 1328 103 16 0 chr11 87780786 87780971 -34062885 + B2_Mm2 SINE B2 2 189 -6 6 1254 498 210 7 108 chr11 87780971 87781037 -34062819 + B4 SINE B4 231 286 -6 6 1254 564 175 117 0 chr11 87781599 87781702 -34062154 + B3A SINE B2 1 115 -83 6 1254 1218 160 67 124 chr11 87781697 87781760 -34062096 - ORR1B2 LTR MaLR -85 282 212 6 1254 1140 15 0 0 chr11 87781760 87781894 -34061962 + (GGA)n Simple_repeat Simple_repeat 1 134 0 6 1254 1218 160 67 124 chr11 87781894 87782129 -34061727 - ORR1B2 LTR MaLR -156 211 2 6 1254 670 179 119 5 chr11 87782378 87782550 -34061306 - B2_Mm2 SINE B2 -11 182 2 6 1254 1254 41 7 0 chr11 87782835 87782981 -34060875 + B1_Mus1 SINE Alu 2 148 0 6 1254 237 108 0 0 chr11 87782984 87783021 -34060835 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1254 2655 137 81 22 chr11 87783028 87783319 -34060537 - RLTR11A LTR ERVK -6 522 231 6 1254 546 57 0 0 chr11 87783319 87783389 -34060467 + (TCC)n Simple_repeat Simple_repeat 3 72 0 6 1254 2655 137 81 22 chr11 87783389 87783590 -34060266 - RLTR11A LTR ERVK -298 230 1 6 1254 954 243 58 73 chr11 87783590 87783917 -34059939 + MTE2a LTR MaLR 57 378 -1 6 1254 490 320 66 17 chr11 87784023 87784204 -34059652 + MTE-int LTR MaLR 217 406 -1174 6 1254 2177 302 73 21 chr11 87784240 87784912 -34058944 + MTE-int LTR MaLR 611 1317 -263 6 1254 1182 88 0 0 chr11 87784913 87785061 -34058795 + B1_Mus1 SINE Alu 1 148 0 6 1254 228 162 0 0 chr11 87785063 87785100 -34058756 + A-rich Low_complexity Low_complexity 1 37 0 6 1254 1056 133 193 6 chr11 87785149 87785330 -34058526 + B3 SINE B2 2 216 0 6 1254 756 127 0 80 chr11 87785420 87785535 -34058321 + MTC LTR MaLR 2 109 -312 6 1254 738 0 0 0 chr11 87785535 87785617 -34058239 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 6 1254 1370 75 6 0 chr11 87785617 87785791 -34058065 - B2_Mm1a SINE B2 -17 176 2 6 1254 756 127 0 80 chr11 87785791 87785811 -34058045 + MTC LTR MaLR 110 126 -295 6 1254 1144 29 0 0 chr11 87785810 87785949 -34057907 - B1_Mm SINE Alu -2 145 7 6 1254 731 157 15 22 chr11 87785956 87786056 -34057800 + MTC LTR MaLR 108 206 -215 6 1254 916 104 0 0 chr11 87786056 87786181 -34057675 + B1_Mus1 SINE Alu 2 126 -22 6 1254 1312 56 0 11 chr11 87786181 87786361 -34057495 + (GAAAA)n Simple_repeat Simple_repeat 2 179 0 6 1254 397 194 25 70 chr11 87786380 87786533 -34057323 - B1_Mur1 SINE Alu -27 122 5 6 1254 655 224 129 88 chr11 87786595 87786893 -34056963 + MTE2a LTR MaLR 57 360 -19 6 1254 284 185 155 40 chr11 87786932 87787064 -34056792 + MTE2b LTR MaLR 93 298 -81 6 1254 1652 27 5 0 chr11 87787064 87787251 -34056605 - B2_Mm1t SINE B2 -4 189 2 6 1254 266 186 336 27 chr11 87787251 87787301 -34056555 + MTE2b LTR MaLR 299 378 -1 6 1254 314 283 130 22 chr11 87787406 87787682 -34056174 + MERVL-int LTR ERVL 2491 2802 -2912 6 1254 349 162 129 20 chr11 87787901 87788002 -34055854 + BC1_Mm scRNA scRNA 7 118 -34 6 1254 313 200 0 150 chr11 87788572 87788672 -34055184 + MLT2C1 LTR ERVL 414 498 -65 6 1254 2344 171 63 74 chr11 87788940 87789416 -34054440 - RMER1B Other Other -12 1054 570 6 1254 318 80 0 0 chr11 87789416 87789466 -34054390 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1254 2344 171 63 74 chr11 87789466 87789559 -34054297 - RMER1B Other Other -497 569 491 6 1254 251 281 110 0 chr11 87789820 87789902 -34053954 + MER58B DNA MER1_type 179 269 -72 6 1254 309 239 161 37 chr11 87789910 87790176 -34053680 + L1MB5 LINE L1 5669 5973 -211 6 1254 523 163 11 21 chr11 87790176 87790270 -34053586 + B4A SINE B4 2 94 -198 6 1254 657 283 68 5 chr11 87790272 87790464 -34053392 + B3 SINE B2 1 204 -12 6 1254 1191 61 14 0 chr11 87790525 87790673 -34053183 + B1_Mur4 SINE Alu 1 150 0 6 1254 302 323 91 0 chr11 87790701 87790800 -34053056 + B4A SINE B4 124 231 -61 6 1254 270 265 168 36 chr11 87790846 87790983 -34052873 + L1MB5 LINE L1 5967 6121 -57 6 1254 688 218 134 31 chr11 87795773 87795967 -34047889 + B3 SINE B2 1 214 -2 6 1254 710 191 107 0 chr11 87796117 87796248 -34047608 - RSINE1 SINE B4 -19 146 2 6 1254 434 257 110 65 chr11 87796305 87796459 -34047397 + MER2 DNA MER2_type 1 161 -184 6 1254 965 208 59 5 chr11 87796491 87796694 -34047162 + B3 SINE B2 3 216 0 6 1254 1227 54 0 0 chr11 87796706 87796853 -34047003 + B1_Mus2 SINE Alu 1 147 0 6 1254 729 208 28 7 chr11 87797647 87797792 -34046064 + B1_Mur3 SINE Alu 2 149 0 6 1254 242 272 63 5 chr11 87797958 87798052 -34045804 + MIR SINE MIR 60 161 -115 6 1254 204 340 106 10 chr11 87798146 87798250 -34045606 + MIR SINE MIR 33 146 -62 6 1254 245 263 17 17 chr11 87798339 87798397 -34045459 + MER58A DNA MER1_type 20 77 -147 6 1254 455 282 17 8 chr11 87798836 87798954 -34044902 + PB1D7 SINE Alu 2 120 0 6 1254 203 178 22 0 chr11 87801039 87801084 -34042772 + C-rich Low_complexity Low_complexity 2 47 0 6 1254 204 220 20 0 chr11 87801170 87801220 -34042636 + G-rich Low_complexity Low_complexity 3 53 0 6 1254 913 113 42 0 chr11 87801793 87801935 -34041921 + B1_Mur4 SINE Alu 3 150 0 6 1254 531 0 0 0 chr11 87802034 87802093 -34041763 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1254 252 0 0 0 chr11 87802936 87802964 -34040892 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1254 344 203 0 55 chr11 87802970 87803043 -34040813 + ID4 SINE ID 1 69 -14 6 1254 354 319 121 26 chr11 87803064 87803296 -34040560 - MIR SINE MIR -1 261 8 6 1254 609 234 81 17 chr11 87803400 87803574 -34040282 - B3 SINE B2 -25 191 7 6 1254 935 161 7 0 chr11 87803574 87803717 -34040139 - B1_Mur2 SINE Alu -5 144 1 6 1254 786 95 0 0 chr11 87804120 87804246 -34039610 + (CA)n Simple_repeat Simple_repeat 2 127 0 6 1254 206 382 55 59 chr11 87804250 87804470 -34039386 + MIR SINE MIR 12 230 -32 6 1254 656 178 248 0 chr11 87804723 87804880 -34038976 - URR1A DNA MER1_type -1 225 30 6 1254 314 279 0 0 chr11 87805716 87805784 -34038072 + B1F SINE Alu 75 142 -7 6 1254 238 317 0 0 chr11 87805784 87805844 -34038012 + polypurine Low_complexity Low_complexity 5 64 0 6 1254 282 254 32 0 chr11 87805948 87806011 -34037845 - ID4 SINE ID -14 69 5 6 1254 281 271 10 13 chr11 87806022 87806119 -34037737 - ID4 SINE ID -53 99 7 6 1254 1772 177 79 61 chr11 87806356 87806473 -34037383 + MTD LTR MaLR 10 111 -308 6 1254 1082 108 0 7 chr11 87806473 87806622 -34037234 - B1_Mus1 SINE Alu 0 148 1 6 1254 1772 178 79 60 chr11 87806622 87806904 -34036952 + MTD LTR MaLR 112 407 -12 6 1254 388 263 30 0 chr11 87806909 87807008 -34036848 - RSINE1 SINE B4 -61 104 3 6 1254 180 0 0 0 chr11 87807019 87807039 -34036817 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1254 1530 32 0 70 chr11 87807045 87807245 -34036611 + B2_Mm1a SINE B2 2 187 -6 6 1254 201 256 0 0 chr11 87807279 87807322 -34036534 + (TATG)n Simple_repeat Simple_repeat 2 44 0 6 1254 337 185 258 11 chr11 87807331 87807424 -34036432 + B1_Mur2 SINE Alu 28 143 -6 6 1254 608 299 78 127 chr11 87807453 87808004 -34035852 - L1MB7 LINE L1 -190 5994 5471 6 1254 455 154 119 127 chr11 87808010 87808136 -34035720 - B1F2 SINE Alu 0 149 25 6 1254 702 262 14 0 chr11 87808172 87808317 -34035539 - ID_B1 SINE B4 0 224 78 6 1254 308 94 19 0 chr11 87808335 87808388 -34035468 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1254 242 219 244 0 chr11 87808391 87808473 -34035383 - RSINE1 SINE B4 -60 105 4 6 1254 637 265 20 15 chr11 87808475 87808678 -34035178 - L1MB7 LINE L1 -694 5490 5287 6 1254 464 302 35 8 chr11 87808687 87808862 -34034994 - B3A SINE B2 -10 185 1 6 1254 931 181 40 56 chr11 87808868 87808990 -34034866 - L1MB7 LINE L1 -869 5277 5161 6 1254 1075 64 28 0 chr11 87808990 87809131 -34034725 + B1_Mur4 SINE Alu 1 145 -5 7 1254 931 181 40 56 chr11 87809131 87809260 -34034596 - L1MB7 LINE L1 -986 5160 5030 6 1254 375 222 85 66 chr11 87809285 87809391 -34034465 - PB1D9 SINE Alu -3 117 10 7 1254 620 81 384 0 chr11 87809391 87809490 -34034366 + B1_Mus2 SINE Alu 1 137 -10 7 1254 486 0 0 0 chr11 87809490 87809544 -34034312 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 1254 384 219 101 7 chr11 87809565 87809703 -34034153 - L1MB7 LINE L1 -1154 4992 4842 6 1254 929 124 71 27 chr11 87809747 87809930 -34033926 + B2_Mm2 SINE B2 2 192 -3 7 1254 1322 27 0 0 chr11 87809988 87810135 -34033721 - B1_Mm SINE Alu 0 147 1 7 1254 559 232 38 5 chr11 87810267 87810400 -34033456 + B1F SINE Alu 1 140 -10 7 1254 180 77 0 0 chr11 87810400 87810426 -34033430 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1254 512 268 67 48 chr11 87810493 87810701 -34033155 + B3 SINE B2 1 212 -4 7 1254 194 242 136 0 chr11 87811345 87811411 -34032445 + L3 LINE CR1 1064 1138 -3351 7 1254 349 226 21 41 chr11 87811446 87811543 -34032313 + MTEa LTR MaLR 278 372 -7 7 1254 270 342 113 33 chr11 87811667 87811969 -34031887 + L2b LINE L2 2110 2435 -984 7 1254 600 273 48 57 chr11 87812049 87812259 -34031597 - B3 SINE B2 -2 214 7 7 1254 409 314 207 25 chr11 87812261 87812586 -34031270 - MLT1J LTR MaLR -68 444 61 7 1254 935 269 24 24 chr11 87812604 87812894 -34030962 + B4 SINE B4 1 290 -2 7 1254 393 95 0 0 chr11 87813056 87813119 -34030737 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1254 701 192 48 0 chr11 87813121 87813246 -34030610 - B1_Mur4 SINE Alu -19 131 1 7 1254 735 219 146 26 chr11 87813314 87813506 -34030350 + B3 SINE B2 2 216 0 7 1254 344 290 50 0 chr11 87813537 87813637 -34030219 + PB1D10 SINE Alu 13 117 0 7 1254 753 256 26 24 chr11 87813769 87813983 -34029873 + B3A SINE B2 9 215 -1 7 1254 1369 235 52 72 chr11 87813996 87814117 -34029739 + ORR1D2 LTR MaLR 17 126 -244 7 1254 291 28 0 0 chr11 87814117 87814153 -34029703 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1254 1151 23 8 0 chr11 87814153 87814284 -34029572 - B1_Mus2 SINE Alu -13 134 3 7 1254 1369 235 52 72 chr11 87814284 87814509 -34029347 + ORR1D2 LTR MaLR 127 356 -14 7 1254 281 301 74 65 chr11 87814519 87814736 -34029120 + L2b LINE L2 2930 3148 -227 7 1254 287 280 80 0 chr11 87814780 87814855 -34029001 - RMER15 LTR ERVL 0 575 495 7 1254 1251 61 0 0 chr11 87814868 87815015 -34028841 + B1_Mus2 SINE Alu 1 147 0 7 1254 682 179 0 4 chr11 87815043 87815165 -34028691 + B1_Mur4 SINE Alu 22 139 -9 7 1254 543 69 0 0 chr11 87815200 87815272 -34028584 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 7 1254 352 212 141 0 chr11 87815275 87815374 -34028482 - RMER15 LTR ERVL -78 497 385 7 1254 388 119 0 56 chr11 87815368 87815439 -34028417 - B1_Mm SINE Alu -13 134 68 7 1254 263 192 167 0 chr11 87815493 87815571 -34028285 - MTEb LTR MaLR -15 364 270 7 1254 305 273 25 38 chr11 87815862 87815942 -34027914 - MLT2B3 LTR ERVL -454 100 22 7 1254 563 167 104 0 chr11 87816171 87816267 -34027589 + PB1D9 SINE Alu 5 110 -10 7 1254 239 315 0 27 chr11 87816317 87816392 -34027464 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 7 1254 870 149 35 14 chr11 87817036 87817179 -34026677 + B1_Mur4 SINE Alu 3 148 -2 7 1254 1858 174 51 28 chr11 87817603 87817994 -34025862 - MTD LTR MaLR -17 402 3 7 156 1425 74 26 5 chr11 87818138 87818328 -34025528 + B2_Mm2 SINE B2 1 194 -1 7 1255 410 255 19 38 chr11 87818351 87818457 -34025399 + MT2B LTR ERVL 155 258 -343 7 1255 696 196 83 0 chr11 87818364 87818497 -34025359 + B1_Mur2 SINE Alu 6 149 0 7 1255 189 0 0 0 chr11 87818497 87818518 -34025338 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1255 730 97 88 0 chr11 87818526 87818639 -34025217 + B1_Mus1 SINE Alu 25 147 -1 7 1255 1121 90 0 0 chr11 87818727 87818872 -34024984 - B1_Mm SINE Alu -1 146 2 7 1255 703 201 142 0 chr11 87819365 87819534 -34024322 - B3 SINE B2 0 216 24 7 1255 1181 221 64 24 chr11 87819543 87819839 -34024017 + MTE2b LTR MaLR 68 375 -4 7 1255 1397 229 28 97 chr11 87820324 87820749 -34023107 + RLTR18B LTR ERVK 113 508 -4 7 1255 347 319 8 40 chr11 87821484 87821508 -34022348 - ID_B1 SINE B4 -34 190 118 7 1255 376 268 0 11 chr11 87821508 87821595 -34022261 - PB1D10 SINE Alu -29 88 3 7 1255 347 319 8 40 chr11 87821595 87821608 -34022248 - ID_B1 SINE B4 -34 117 71 7 1255 598 154 0 168 chr11 87821632 87821823 -34022033 + B1_Mur4 SINE Alu 1 140 -10 7 1255 267 0 22 44 chr11 87821823 87821868 -34021988 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1255 285 300 0 0 chr11 87821877 87821947 -34021909 + ID2 SINE ID 3 72 -11 7 1255 495 0 0 0 chr11 87821949 87822004 -34021852 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1255 395 218 7 0 chr11 87822005 87822152 -34021704 + GA-rich Low_complexity Low_complexity 2 149 0 7 1255 491 339 45 24 chr11 87822652 87822886 -34020970 + MIR SINE MIR 3 237 -25 7 1255 1107 97 17 0 chr11 87823995 87824171 -34019685 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 7 1255 762 11 0 0 chr11 87824171 87824258 -34019598 + (TTCCC)n Simple_repeat Simple_repeat 4 90 0 7 1255 1194 54 0 13 chr11 87824258 87824398 -34019458 - B1_Mus1 SINE Alu -8 140 2 7 1255 210 128 0 0 chr11 87825924 87825963 -34017893 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1255 189 0 0 0 chr11 87826047 87826068 -34017788 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 7 1255 285 277 127 30 chr11 87826223 87826357 -34017499 - B1F2 SINE Alu -2 147 1 7 1255 180 0 0 0 chr11 87826372 87826392 -34017464 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1255 1075 38 0 0 chr11 87826392 87826523 -34017333 - B1_Mus1 SINE Alu 0 148 18 7 1255 693 292 70 22 chr11 87827050 87827323 -34016533 + B4 SINE B4 1 286 -6 7 1255 516 288 97 65 chr11 87827424 87827765 -34016091 - L2 LINE L2 -1136 2283 1932 7 1255 1046 84 28 7 chr11 87827803 87827947 -34015909 + B1_Mur4 SINE Alu 1 147 -3 7 1255 1004 254 10 0 chr11 87827975 87828184 -34015672 - B3 SINE B2 -2 214 4 7 1255 306 87 0 0 chr11 87828211 87828257 -34015599 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1255 326 215 200 37 chr11 87828266 87828401 -34015455 - B3A SINE B2 -41 157 1 7 1255 658 220 0 0 chr11 87828429 87828547 -34015309 - PB1D9 SINE Alu -2 118 1 7 1255 949 274 83 17 chr11 87828580 87828988 -34014868 - L2 LINE L2 -1551 1868 1434 7 1255 344 235 30 112 chr11 87829005 87829025 -34014831 + MT2B LTR ERVL 142 150 -451 7 1255 762 198 0 0 chr11 87829025 87829151 -34014705 + B1_Mur4 SINE Alu 2 127 -23 7 1255 590 286 106 16 chr11 87829200 87829436 -34014420 - MLT1F1 LTR MaLR -276 293 36 7 1255 306 255 112 41 chr11 87829436 87829534 -34014322 + MLT1B LTR MaLR 4 108 -282 7 1255 256 306 62 18 chr11 87829540 87829653 -34014203 - ID_B1 SINE B4 -22 202 85 7 1255 430 193 0 12 chr11 87829654 87829738 -34014118 - ID4 SINE ID 0 83 1 7 1255 288 0 0 0 chr11 87829981 87830013 -34013843 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1255 1421 70 27 0 chr11 87830152 87830338 -34013518 - B2_Mm2 SINE B2 -3 192 2 7 1255 29 0 0 0 chr11 87830396 87830425 -34013431 + AT_rich Low_complexity Low_complexity 1 29 0 7 1255 1524 178 69 81 chr11 87830495 87830942 -34012914 + RMER10A LTR ERVL 1 442 0 7 1255 773 213 0 28 chr11 87831104 87831249 -34012607 + B1_Mur3 SINE Alu 2 142 -7 7 1255 577 121 127 17 chr11 87831333 87831451 -34012405 - B2_Mm2 SINE B2 0 195 65 7 1255 322 141 0 72 chr11 87831625 87831694 -34012162 + RLTR25A LTR ERVK 513 576 -527 7 1255 800 61 0 0 chr11 87831639 87831738 -34012118 + B1_Mus2 SINE Alu 49 147 0 7 1255 375 82 419 12 chr11 87831750 87831836 -34012020 - B2_Mm2 SINE B2 -14 181 61 7 1255 896 92 69 0 chr11 87831921 87832052 -34011804 - B2_Mm1t SINE B2 -14 179 40 7 1255 393 143 39 13 chr11 87832074 87832152 -34011704 + RLTR19-int LTR ERVK 2014 2093 -3429 7 1255 375 173 261 8 chr11 87832147 87832281 -34011575 + MYSERV6-int LTR ERVK 7157 7324 -1635 7 1255 885 153 264 0 chr11 87832285 87832448 -34011408 + B3 SINE B2 1 206 -10 7 1255 1204 168 126 39 chr11 87832470 87832831 -34011025 + RMER16 LTR ERVK 1 529 -4 7 1255 704 227 147 34 chr11 87832833 87833098 -34010758 + RLTR19-int LTR ERVK 2580 2874 -3263 7 1255 265 238 123 12 chr11 87833238 87833319 -34010537 + RMER17C-int LTR ERVK 1947 2036 -1202 7 1255 279 0 0 0 chr11 87833477 87833508 -34010348 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1255 991 163 59 146 chr11 87833511 87833834 -34010022 + RMER10A LTR ERVL 4 298 -144 7 1255 474 186 65 92 chr11 87833847 87834031 -34009825 + RMER10A LTR ERVL 258 436 -6 7 1255 182 255 0 21 chr11 87834089 87834137 -34009719 - MIRc SINE MIR -202 66 20 7 1255 21 0 0 0 chr11 87834310 87834331 -34009525 + AT_rich Low_complexity Low_complexity 1 21 0 7 1255 225 209 129 43 chr11 87834345 87834415 -34009441 - B1F2 SINE Alu -59 90 15 7 1255 228 283 33 0 chr11 87834645 87834705 -34009151 - MER21B LTR ERV1 -782 81 20 7 1255 552 131 0 39 chr11 87834739 87834842 -34009014 - ORR1A4 LTR MaLR -230 99 1 7 1255 387 0 0 0 chr11 87834945 87834988 -34008868 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1255 430 317 109 86 chr11 87835020 87835052 -34008804 + RMER19B LTR ERVK 1 32 -579 7 1255 2355 116 99 57 chr11 87835052 87835508 -34008348 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1255 1246 191 30 92 chr11 87835508 87835824 -34008032 + RMER19B LTR ERVK 27 356 -255 7 1255 3248 188 116 48 chr11 87835835 87836208 -34007648 - RMER19B LTR ERVK -7 895 441 7 1255 1303 46 80 0 chr11 87836208 87836383 -34007473 - B2_Mm2 SINE B2 -2 193 5 7 1255 3248 188 116 48 chr11 87836383 87836847 -34007009 - RMER19B LTR ERVK -462 440 1 7 1255 186 292 83 0 chr11 87836916 87836988 -34006868 - MIR SINE MIR -120 142 65 7 1255 526 97 75 24 chr11 87837068 87837184 -34006672 - B1_Mur2 SINE Alu -1 148 33 8 1255 1033 176 15 5 chr11 87837188 87837388 -34006468 - B3 SINE B2 0 216 15 8 1255 497 167 33 0 chr11 87837431 87837521 -34006335 - B1_Mur2 SINE Alu -36 113 21 8 1255 202 200 0 0 chr11 87837563 87837603 -34006253 + CT-rich Low_complexity Low_complexity 1 40 0 8 1255 1183 74 0 0 chr11 87838005 87838153 -34005703 - B1_Mus1 SINE Alu 0 148 1 8 1255 243 61 0 0 chr11 87838169 87838202 -34005654 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 8 1255 1192 62 7 0 chr11 87838212 87838358 -34005498 - B1_Mus2 SINE Alu 0 147 1 8 1255 621 168 23 46 chr11 87838433 87838564 -34005292 - B1_Mur1 SINE Alu 0 149 22 8 1255 1377 143 9 9 chr11 87838565 87838790 -34005066 + URR1A DNA MER1_type 2 226 0 8 1255 830 219 34 29 chr11 87838877 87839084 -34004772 - B3 SINE B2 -8 208 1 8 1255 653 168 7 109 chr11 87839287 87839447 -34004409 - B1_Mur3 SINE Alu 0 148 8 8 1255 1607 157 6 48 chr11 87839454 87839768 -34004088 - RLTR41 LTR ERV1 0 446 146 8 1255 995 73 81 0 chr11 87839928 87840064 -34003792 - B1_Mm SINE Alu 0 147 1 8 1255 695 176 39 84 chr11 87840095 87840250 -34003606 + B1_Mur2 SINE Alu 2 149 0 8 1255 1140 45 0 0 chr11 87840261 87840395 -34003461 + B1_Mus2 SINE Alu 1 134 -13 8 1255 452 245 155 52 chr11 87840405 87840560 -34003296 + ID_B1 SINE B4 2 172 -52 8 1255 192 143 0 0 chr11 87840749 87840791 -34003065 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1255 402 186 9 89 chr11 87842326 87842438 -34001418 + MT2B LTR ERVL 154 256 -345 8 1255 638 151 67 0 chr11 87842348 87842467 -34001389 + B1_Mus2 SINE Alu 12 138 -9 8 1255 329 174 14 0 chr11 87842479 87842548 -34001308 + GA-rich Low_complexity Low_complexity 1 70 0 8 1255 333 229 0 0 chr11 87842568 87842629 -34001227 - RSINE1 SINE B4 -103 62 2 8 1255 666 157 54 16 chr11 87842805 87842934 -34000922 + B1_Mur4 SINE Alu 2 135 -15 8 1255 189 107 0 0 chr11 87842946 87842974 -34000882 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1255 845 160 20 14 chr11 87843214 87843360 -34000496 + B1_Mus1 SINE Alu 1 147 -1 8 1255 1004 79 58 0 chr11 87843410 87843549 -34000307 + B1_Mus2 SINE Alu 1 147 0 8 1255 224 200 0 35 chr11 87844359 87844416 -33999440 + (TCTCTG)n Simple_repeat Simple_repeat 3 57 0 8 1255 492 48 0 0 chr11 87844872 87844935 -33998921 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1255 569 140 144 0 chr11 87846512 87846641 -33997215 - B1_Mus1 SINE Alu -1 147 2 8 1255 250 91 36 0 chr11 87846649 87846704 -33997152 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 8 1255 334 244 0 35 chr11 87846761 87846846 -33997010 - ID4_ SINE ID -1 82 1 8 1255 256 165 63 105 chr11 87847005 87847100 -33996756 - MTEb LTR MaLR -20 359 269 8 1255 640 85 0 0 chr11 87847302 87847396 -33996460 - BC1_Mm scRNA scRNA -57 95 2 8 1255 944 265 10 0 chr11 87847533 87847733 -33996123 + ID_B1 SINE B4 2 203 -21 8 1255 1071 101 7 0 chr11 87848107 87848256 -33995600 + B1_Mur4 SINE Alu 1 150 0 8 1255 640 267 77 38 chr11 87848347 87848530 -33995326 + B3 SINE B2 14 203 -13 8 1255 1057 194 41 0 chr11 87848541 87848737 -33995119 - B3 SINE B2 -12 204 1 8 1255 23 0 0 0 chr11 87848743 87848766 -33995090 + AT_rich Low_complexity Low_complexity 1 23 0 8 1255 960 121 43 0 chr11 87848779 87848920 -33994936 - B1_Mus1 SINE Alu 0 148 2 8 1255 591 216 331 6 chr11 87848926 87849089 -33994767 - B3 SINE B2 0 216 1 8 1255 521 317 48 27 chr11 87849137 87849325 -33994531 + B3A SINE B2 7 198 0 8 1255 628 273 50 5 chr11 87849541 87849740 -33994116 + ID_B1 SINE B4 3 210 -14 8 1255 658 201 32 45 chr11 87849792 87849948 -33993908 + B3 SINE B2 1 154 -62 8 1255 228 67 0 0 chr11 87849948 87849978 -33993878 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1255 200 93 70 0 chr11 87850163 87850206 -33993650 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1255 254 256 25 13 chr11 87850693 87850772 -33993084 - LTR88b LTR Gypsy? -748 89 10 8 1255 411 193 3 83 chr11 87850806 87850950 -33992906 + B1_Mur4 SINE Alu 16 150 0 8 1255 1217 41 7 0 chr11 87851544 87851690 -33992166 - B1_Mus2 SINE Alu 0 147 1 8 1255 747 126 79 0 chr11 87851727 87851854 -33992002 - B1_Mur4 SINE Alu -7 143 7 8 1255 220 27 54 0 chr11 87851929 87851966 -33991890 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1255 619 203 98 0 chr11 87851967 87852090 -33991766 - B1_Mur3 SINE Alu -14 135 1 8 1255 1514 73 0 0 chr11 87852412 87852604 -33991252 + B2_Mm1a SINE B2 2 193 0 8 1255 385 241 25 74 chr11 87852619 87852740 -33991116 + ID_B1 SINE B4 81 195 -29 8 1255 255 208 0 0 chr11 87852812 87852860 -33990996 + B1_Mus2 SINE Alu 1 48 -99 8 1255 1018 228 5 0 chr11 87852879 87853081 -33990775 + B3 SINE B2 2 204 -12 8 1255 335 286 0 42 chr11 87853101 87853196 -33990660 + ID_B1 SINE B4 134 224 0 8 1255 281 179 104 0 chr11 87853200 87853267 -33990589 + B4 SINE B4 8 81 -211 8 1255 217 312 142 9 chr11 87853335 87853448 -33990408 - RSINE1 SINE B4 -18 147 20 8 1255 675 56 27 36 chr11 87853479 87853590 -33990266 - B1_Mus1 SINE Alu 0 148 39 8 1255 23 33 0 0 chr11 87853675 87853705 -33990151 + AT_rich Low_complexity Low_complexity 1 30 0 8 1255 1144 55 0 27 chr11 87853710 87853859 -33989997 + B1_Mus2 SINE Alu 1 145 -2 8 1255 195 42 0 0 chr11 87853861 87853885 -33989971 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 1255 254 148 0 18 chr11 87853896 87853951 -33989905 + GA-rich Low_complexity Low_complexity 4 57 0 8 1255 661 228 55 60 chr11 87853957 87854139 -33989717 + B3A SINE B2 7 187 -11 8 1255 378 290 39 24 chr11 87854406 87854533 -33989323 - B3 SINE B2 0 216 88 8 1255 1593 27 32 0 chr11 87854703 87854889 -33988967 + B2_Mm1a SINE B2 2 193 0 8 1255 384 284 83 16 chr11 87855025 87855278 -33988578 - MER58B DNA MER1_type 0 341 61 8 1255 464 232 73 60 chr11 87855379 87855417 -33988439 + MT2B LTR ERVL 135 241 -360 8 1255 683 121 0 0 chr11 87855417 87855516 -33988340 + B1_Mus2 SINE Alu 10 108 -39 8 1255 857 74 8 0 chr11 87855514 87855636 -33988220 + B1_Mus1 SINE Alu 16 138 -10 8 1255 464 232 73 60 chr11 87855516 87855530 -33988326 + MT2B LTR ERVL 242 287 -314 8 1255 191 61 30 0 chr11 87855636 87855669 -33988187 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1255 1155 60 71 18 chr11 87855669 87855838 -33988018 - B2_Mm2 SINE B2 -17 178 1 8 1255 845 187 37 21 chr11 87855859 87856050 -33987806 + B3 SINE B2 23 216 0 8 1255 357 191 277 0 chr11 87856057 87856151 -33987705 + PB1D9 SINE Alu 1 120 0 8 1255 192 123 0 50 chr11 87856154 87856186 -33987670 + A-rich Low_complexity Low_complexity 3 33 0 8 1255 1912 122 86 0 chr11 87856186 87856489 -33987367 + ORR1A4 LTR MaLR 1 329 0 8 1255 192 123 0 50 chr11 87856489 87856516 -33987340 + A-rich Low_complexity Low_complexity 34 58 0 8 1255 403 325 36 7 chr11 87856517 87856698 -33987158 + B3A SINE B2 19 211 -5 8 1255 573 187 171 0 chr11 87856712 87856835 -33987021 + B1_Mur4 SINE Alu 1 144 -6 8 1255 200 35 35 0 chr11 87856837 87856866 -33986990 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1255 1241 109 0 56 chr11 87856897 87856937 -33986919 + B2_Mm1t SINE B2 2 37 -156 8 1255 1554 38 11 5 chr11 87856937 87857123 -33986733 + B2_Mm2 SINE B2 1 187 -8 8 1255 1241 109 0 56 chr11 87857123 87857277 -33986579 + B2_Mm1t SINE B2 38 185 -8 8 1255 1171 75 0 0 chr11 87857392 87857539 -33986317 + B1_Mus1 SINE Alu 2 148 0 8 1255 233 127 0 45 chr11 87857546 87857612 -33986244 + A-rich Low_complexity Low_complexity 1 63 0 8 1255 543 235 17 0 chr11 87857754 87857869 -33985987 + B1_Mus2 SINE Alu 31 147 0 8 1255 228 86 0 0 chr11 87858643 87858678 -33985178 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1255 885 102 70 0 chr11 87858678 87858806 -33985050 - B1_Mus1 SINE Alu -9 139 3 8 1255 182 91 30 0 chr11 87858907 87858940 -33984916 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 8 1255 1131 68 7 0 chr11 87858949 87859095 -33984761 - B1_Mus2 SINE Alu 0 147 1 8 1255 324 274 125 59 chr11 87859501 87859637 -33984219 + RSINE1 SINE B4 1 145 -20 8 1255 229 237 202 20 chr11 87859738 87859837 -33984019 - PB1D9 SINE Alu -3 117 1 8 1255 334 128 568 11 chr11 87859869 87859964 -33983892 + B1_Mur4 SINE Alu 1 148 -2 8 1255 1168 61 0 0 chr11 87860067 87860214 -33983642 - B1_Mus1 SINE Alu -1 147 1 8 1255 210 146 0 24 chr11 87860258 87860300 -33983556 - B1F SINE Alu -89 60 20 8 1255 229 188 0 0 chr11 87862068 87862116 -33981740 + (CGG)n Simple_repeat Simple_repeat 3 50 0 8 1255 431 196 122 0 chr11 87867434 87867541 -33976315 - PB1D9 SINE Alu 0 120 1 8 1255 474 227 108 51 chr11 87867556 87867751 -33976105 - B3 SINE B2 -9 207 2 8 1255 846 59 76 0 chr11 87868500 87868619 -33975237 + B1_Mm SINE Alu 2 129 -18 8 1255 210 71 0 0 chr11 87869336 87869364 -33974492 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1255 433 194 0 0 chr11 87869376 87869448 -33974408 - ID4_ SINE ID -10 73 2 8 1255 1035 67 60 0 chr11 87869754 87869888 -33973968 + B1_Mm SINE Alu 1 142 -5 8 1255 706 131 78 35 chr11 87870206 87870348 -33973508 - B1_Mus1 SINE Alu 0 148 1 9 1255 653 218 78 6 chr11 87870446 87870612 -33973244 - B3 SINE B2 -30 186 9 9 1255 941 144 43 37 chr11 87870641 87870828 -33973028 - B2_Mm2 SINE B2 -7 188 1 9 1255 681 194 82 0 chr11 87871229 87871363 -33972493 - B1_Mus2 SINE Alu 0 147 3 9 1255 1209 103 60 5 chr11 87871389 87871574 -33972282 + B2_Mm2 SINE B2 1 195 0 9 1255 350 129 16 0 chr11 87871708 87871770 -33972086 + (TTTTC)n Simple_repeat Simple_repeat 3 65 0 9 1255 1105 38 8 0 chr11 87871771 87871902 -33971954 - B1_Mus2 SINE Alu -15 132 1 9 1255 313 164 0 0 chr11 87872141 87872196 -33971660 + B2_Mm2 SINE B2 3 57 -138 9 1255 235 259 17 0 chr11 87872185 87872243 -33971613 + B3A SINE B2 81 139 -59 9 1255 255 291 12 12 chr11 87872314 87872394 -33971462 + B1_Mus2 SINE Alu 45 124 -23 9 1255 885 157 132 11 chr11 87872995 87873169 -33970687 + B2_Mm2 SINE B2 1 195 0 9 1255 604 258 131 25 chr11 87873217 87873416 -33970440 - ID_B1 SINE B4 -1 223 4 9 1255 630 167 37 67 chr11 87873472 87873607 -33970249 - B1_Mur4 SINE Alu -15 135 5 9 1255 911 223 19 24 chr11 87874016 87874227 -33969629 - B3 SINE B2 -5 211 2 9 1255 1181 55 7 0 chr11 87874252 87874398 -33969458 - B1_Mus1 SINE Alu -1 147 1 9 1255 344 77 0 19 chr11 87874407 87874460 -33969396 + (CATTA)n Simple_repeat Simple_repeat 2 53 0 9 1255 346 254 58 91 chr11 87874460 87874581 -33969275 - RSINE1 SINE B4 -31 134 18 9 1255 189 74 0 0 chr11 87874581 87874608 -33969248 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1255 891 152 20 7 chr11 87874785 87874931 -33968925 - B1_Mur2 SINE Alu -1 148 1 9 1255 855 170 90 11 chr11 87875849 87876027 -33967829 - B2_Mm2 SINE B2 -3 192 1 9 1255 1381 78 50 0 chr11 87876034 87876213 -33967643 - B2_Mm2 SINE B2 -7 188 1 9 1255 1428 63 0 55 chr11 87876250 87876263 -33967593 - B2_Mm1t SINE B2 -2 191 180 9 1255 1166 62 0 14 chr11 87876263 87876411 -33967445 - B1_Mm SINE Alu 0 147 2 9 1255 1428 63 0 55 chr11 87876411 87876438 -33967418 - B2_Mm1t SINE B2 -14 179 161 9 1255 531 0 0 0 chr11 87876438 87876497 -33967359 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 9 1255 1428 63 0 55 chr11 87876497 87876657 -33967199 - B2_Mm1t SINE B2 -33 160 1 9 1255 536 0 16 0 chr11 87876840 87876904 -33966952 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1255 729 193 7 0 chr11 87877578 87877713 -33966143 - B1_Mus1 SINE Alu -12 136 1 9 1255 228 158 0 0 chr11 87877713 87877751 -33966105 - ID4 SINE ID -44 39 2 9 1255 372 133 0 0 chr11 87878494 87878554 -33965302 + (T)n Simple_repeat Simple_repeat 1 60 0 9 1255 273 162 64 51 chr11 87879305 87879383 -33964473 + RLTR25B LTR ERVK 431 509 -519 9 1255 756 56 9 0 chr11 87879319 87879426 -33964430 + B1_Mus2 SINE Alu 40 147 0 9 1255 207 0 0 0 chr11 87879430 87879453 -33964403 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1255 410 191 0 53 chr11 87879454 87879548 -33964308 + B3A SINE B2 100 188 -10 9 1255 257 183 0 16 chr11 87880465 87880526 -33963330 + (TA)n Simple_repeat Simple_repeat 2 61 0 9 1255 22 35 0 0 chr11 87880627 87880656 -33963200 + AT_rich Low_complexity Low_complexity 1 29 0 9 1255 195 139 0 0 chr11 87881551 87881587 -33962269 + (CCCCCG)n Simple_repeat Simple_repeat 6 41 0 9 1255 45 79 0 0 chr11 87881633 87881734 -33962122 + GC_rich Low_complexity Low_complexity 1 101 0 9 1255 273 57 0 0 chr11 87881790 87881825 -33962031 + (CCG)n Simple_repeat Simple_repeat 3 37 0 9 1255 39 50 0 0 chr11 87881940 87882000 -33961856 + GC_rich Low_complexity Low_complexity 1 60 0 9 1255 35 24 0 0 chr11 87882643 87882685 -33961171 + GC_rich Low_complexity Low_complexity 1 42 0 9 1255 210 105 0 0 chr11 87884269 87884307 -33959549 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 9 1255 362 202 16 114 chr11 87886217 87886340 -33957516 + MT2B LTR ERVL 154 264 -337 9 1255 1071 57 0 0 chr11 87886234 87886375 -33957481 + B1_Mus1 SINE Alu 8 148 0 9 1255 411 222 56 100 chr11 87886236 87886396 -33957460 + B4A SINE B4 94 246 -46 9 1255 257 0 30 0 chr11 87886415 87886448 -33957408 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1255 665 124 57 28 chr11 87887613 87887754 -33956102 - B2_Mm2 SINE B2 0 195 51 9 1255 761 289 15 5 chr11 87888469 87888667 -33955189 - B3 SINE B2 -14 202 3 9 1255 1142 208 14 0 chr11 87888695 87888902 -33954954 - B3 SINE B2 -4 212 3 9 1255 274 191 222 0 chr11 87889389 87889452 -33954404 - ID4_ SINE ID -5 78 2 9 1255 589 229 103 19 chr11 87890182 87890338 -33953518 + ID_B1 SINE B4 51 219 -5 9 1255 632 294 0 0 chr11 87890369 87890505 -33953351 + ID_B1 SINE B4 81 216 -8 9 1255 252 0 0 0 chr11 87890519 87890547 -33953309 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1255 1124 102 0 7 chr11 87890682 87890830 -33953026 - B1_Mus2 SINE Alu 0 147 1 9 1255 653 260 47 0 chr11 87891092 87891242 -33952614 - RSINE1 SINE B4 -5 160 4 9 1255 1210 68 0 0 chr11 87891255 87891403 -33952453 - B1_Mus1 SINE Alu 0 148 1 9 1255 462 210 29 178 chr11 87891545 87891719 -33952137 - B1_Mur1 SINE Alu -1 148 1 9 1255 281 292 0 14 chr11 87891758 87891831 -33952025 - ID4_ SINE ID -11 72 1 9 1255 339 113 0 0 chr11 87891930 87891983 -33951873 + (CAG)n Simple_repeat Simple_repeat 1 53 0 9 1255 393 235 45 145 chr11 87892287 87892307 -33951549 - B4 SINE B4 -55 237 168 9 1255 726 161 0 44 chr11 87892307 87892443 -33951413 - B1_Mur2 SINE Alu -3 146 17 9 1255 393 235 45 145 chr11 87892443 87892466 -33951390 - B4 SINE B4 -55 167 77 9 1255 548 196 0 10 chr11 87893227 87893325 -33950531 - B1_Mur2 SINE Alu 0 149 53 9 1255 906 203 75 0 chr11 87893740 87893927 -33949929 - B3 SINE B2 -13 203 3 9 1255 910 153 0 20 chr11 87894172 87894319 -33949537 + B1_Mur1 SINE Alu 1 144 -5 9 1255 200 182 0 0 chr11 87894613 87894646 -33949210 - MIRc SINE MIR -72 196 164 9 1255 22 35 0 0 chr11 87895630 87895659 -33948197 + AT_rich Low_complexity Low_complexity 1 29 0 9 1255 219 146 0 0 chr11 87896032 87896073 -33947783 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 9 1255 22 0 0 0 chr11 87896989 87897011 -33946845 + AT_rich Low_complexity Low_complexity 1 22 0 9 1255 608 250 36 2 chr11 87899106 87899266 -33944590 + B3A SINE B2 45 211 -5 9 1255 677 208 46 8 chr11 87899288 87899419 -33944437 - MTE2b LTR MaLR -235 144 9 9 1255 199 244 0 0 chr11 87899447 87899488 -33944368 + MIRb SINE MIR 199 239 -29 9 1255 766 191 113 26 chr11 87899508 87899702 -33944154 - B3 SINE B2 -5 211 1 9 1255 1045 103 195 0 chr11 87900210 87900384 -33943472 + URR1B DNA MER1_type 4 211 -14 9 1255 236 152 0 21 chr11 87900618 87900665 -33943191 - MER101B LTR ERV1 -245 325 280 9 1255 184 306 0 115 chr11 87901025 87901121 -33942735 + L2c LINE L2 3039 3123 -264 9 1255 183 80 0 0 chr11 87901177 87901202 -33942654 + (CAAAG)n Simple_repeat Simple_repeat 1 25 0 9 1255 358 279 35 49 chr11 87901316 87901327 -33942529 - B1_Mur3 SINE Alu 0 149 139 9 1255 192 77 0 0 chr11 87901327 87901353 -33942503 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 9 1255 396 253 14 39 chr11 87901353 87901484 -33942372 - B1_Mur1 SINE Alu -11 138 9 9 1255 295 307 43 26 chr11 87901381 87901498 -33942358 - B4 SINE B4 -94 198 80 9 1255 687 260 226 32 chr11 87901687 87902001 -33941855 + MTEa LTR MaLR 5 379 0 9 1255 1116 228 0 0 chr11 87902072 87902278 -33941578 + B3 SINE B2 1 206 -10 9 1255 319 357 108 0 chr11 87902306 87902463 -33941393 - L1MC4 LINE L1 -499 7543 7370 9 1255 202 188 0 0 chr11 87902483 87902515 -33941341 + polypyrimidine Low_complexity Low_complexity 4 35 0 9 1255 242 300 17 0 chr11 87902664 87902724 -33941132 + B1_Mus1 SINE Alu 1 61 -87 9 1255 201 133 0 0 chr11 87902766 87902796 -33941060 + (TCC)n Simple_repeat Simple_repeat 2 31 0 9 1255 307 123 62 0 chr11 87903016 87903097 -33940759 + CT-rich Low_complexity Low_complexity 1 86 0 9 1255 1135 82 0 0 chr11 87903285 87903432 -33940424 + B1_Mus1 SINE Alu 2 148 0 9 1255 456 250 70 77 chr11 87903293 87903449 -33940407 + B4A SINE B4 94 248 -44 9 1255 225 0 0 0 chr11 87903523 87903548 -33940308 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 9 1255 252 122 0 0 chr11 87903676 87903717 -33940139 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 9 1255 301 200 43 0 chr11 87903717 87903787 -33940069 - ID_B1 SINE B4 -16 208 136 9 1255 272 293 91 0 chr11 87903895 87903994 -33939862 + MIR SINE MIR 95 202 -60 9 1255 391 279 236 10 chr11 87904036 87904235 -33939621 + MIRb SINE MIR 9 252 -16 9 1255 724 201 181 101 chr11 87904484 87904524 -33939332 + B3 SINE B2 2 40 -176 9 1255 992 78 78 0 chr11 87904524 87904653 -33939203 + B1_Mus1 SINE Alu 1 139 -9 9 1255 520 14 0 28 chr11 87904653 87904724 -33939132 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 9 1255 724 201 181 101 chr11 87904724 87904881 -33938975 + B3 SINE B2 41 215 -1 9 1255 219 325 65 0 chr11 87905883 87905960 -33937896 + ID_B1 SINE B4 70 151 -73 9 1255 831 173 204 11 chr11 87905963 87906144 -33937712 + B3 SINE B2 1 216 0 9 1255 1082 80 0 0 chr11 87906146 87906283 -33937573 + B1_Mm SINE Alu 2 138 -9 9 1255 207 0 0 0 chr11 87906283 87906306 -33937550 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1255 213 302 127 0 chr11 87906339 87906402 -33937454 + B4A SINE B4 85 155 -137 9 1255 637 307 40 50 chr11 87906702 87906901 -33936955 + B3A SINE B2 1 197 -1 9 1255 312 27 0 0 chr11 87906901 87906938 -33936918 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 1 1255 534 233 27 160 chr11 87906938 87906963 -33936893 + B2_Mm2 SINE B2 172 194 -1 1 1255 563 186 61 9 chr11 87907016 87907130 -33936726 + PB1D9 SINE Alu 1 120 0 1 1255 211 0 0 81 chr11 87907131 87907168 -33936688 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1255 492 125 14 0 chr11 87907206 87907278 -33936578 + B1_Mus2 SINE Alu 54 126 -21 1 1255 221 150 0 0 chr11 87907313 87907353 -33936503 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1255 508 226 171 45 chr11 87907362 87907538 -33936318 + B3A SINE B2 1 198 0 1 1255 375 317 129 68 chr11 87908468 87908861 -33934995 + MT2A LTR ERVL 75 534 -20 1 1255 859 131 15 0 chr11 87908861 87908998 -33934858 - B1_Mus1 SINE Alu 0 148 10 1 1255 2087 238 54 79 chr11 87909085 87909422 -33934434 + RCHARR1 DNA MER1_type 3 325 -649 1 1255 1208 48 0 26 chr11 87909422 87909573 -33934283 + B1_Mus1 SINE Alu 2 148 0 1 1255 2087 238 54 79 chr11 87909573 87909778 -33934078 + RCHARR1 DNA MER1_type 326 527 -447 1 1255 682 239 7 14 chr11 87909778 87909922 -33933934 + B1_Mur2 SINE Alu 1 143 -6 1 1255 2087 238 54 79 chr11 87909922 87910012 -33933844 + RCHARR1 DNA MER1_type 528 620 -354 1 1255 806 150 9 34 chr11 87910009 87910176 -33933680 + B3 SINE B2 24 180 -15 1 1255 273 207 17 17 chr11 87910183 87910242 -33933614 - MIRm SINE MIR -133 143 85 1 1255 195 42 0 0 chr11 87911176 87911200 -33932656 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 1 1255 30 100 0 0 chr11 87912722 87912822 -33931034 + GC_rich Low_complexity Low_complexity 1 100 0 1 1255 1227 62 0 0 chr11 87915132 87915278 -33928578 - B1_Mus1 SINE Alu 0 148 3 1 1255 1169 195 13 35 chr11 87915963 87916192 -33927664 + ID_B1 SINE B4 1 224 0 1 1255 274 250 13 69 chr11 87916180 87916231 -33927625 + ORR1B1-int LTR MaLR 605 646 -863 1 1255 1015 143 0 0 chr11 87916231 87916378 -33927478 + B1_Mus1 SINE Alu 1 147 -1 1 1255 477 0 0 0 chr11 87916394 87916447 -33927409 + (CAAAC)n Simple_repeat Simple_repeat 5 57 0 1 1255 245 338 0 36 chr11 87916653 87916736 -33927120 - ID4 SINE ID -3 80 1 1 1255 297 0 0 0 chr11 87917227 87917260 -33926596 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1255 534 153 107 9 chr11 87917325 87917424 -33926432 - B1_Mur1 SINE Alu -4 145 35 1 1255 447 19 0 0 chr11 87917424 87917476 -33926380 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1255 534 153 107 9 chr11 87917476 87917488 -33926368 - B1_Mur1 SINE Alu -115 34 23 1 1255 496 175 14 11 chr11 87917506 87917631 -33926225 - B3A SINE B2 -6 210 5 1 1255 242 232 44 29 chr11 87917656 87917732 -33926124 + B3A SINE B2 2 71 -124 1 1255 201 257 84 14 chr11 87917948 87918019 -33925837 - L2c LINE L2 -49 3338 3263 1 1255 1047 130 43 16 chr11 87918494 87918682 -33925174 - B2_Mm2 SINE B2 0 195 3 1 1255 641 248 20 34 chr11 87918682 87918828 -33925028 - B1F SINE Alu 0 149 6 1 1255 675 174 76 48 chr11 87918863 87919008 -33924848 - B1F SINE Alu 0 149 1 1 1255 920 206 60 5 chr11 87919035 87919235 -33924621 - B3 SINE B2 -1 215 5 1 1255 240 315 118 78 chr11 87919348 87919398 -33924458 + L3b LINE CR1 204 260 -222 1 1255 405 0 0 0 chr11 87919398 87919443 -33924413 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1255 240 315 118 78 chr11 87919443 87919647 -33924209 + L3b LINE CR1 261 468 -14 1 1255 438 286 21 28 chr11 87920385 87920409 -33923447 + ID SINE ID 57 79 -145 1 1255 637 139 0 207 chr11 87920409 87920554 -33923302 + B1_Mur2 SINE Alu 3 117 -32 1 1255 265 240 0 237 chr11 87920478 87920609 -33923247 + MT2B LTR ERVL 199 298 -303 1 1255 272 320 98 20 chr11 87920590 87920692 -33923164 + B3A SINE B2 73 182 -16 1 1255 207 0 0 0 chr11 87920706 87920729 -33923127 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1255 1182 88 0 0 chr11 87920752 87920899 -33922957 - B1_Mus2 SINE Alu 0 147 1 1 1255 291 106 64 0 chr11 87920920 87920967 -33922889 + B3 SINE B2 2 51 -165 1 1255 631 272 81 27 chr11 87921478 87921663 -33922193 + B3 SINE B2 5 199 -17 1 1255 468 0 0 0 chr11 87921664 87921716 -33922140 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1255 565 205 99 32 chr11 87921729 87921910 -33921946 - B3A SINE B2 -3 192 1 1 1255 431 223 293 43 chr11 87921945 87922109 -33921747 - B3 SINE B2 -6 210 6 1 1255 844 171 14 0 chr11 87922533 87922673 -33921183 - B1_Mus2 SINE Alu -1 146 5 1 1255 1207 36 0 0 chr11 87923032 87923171 -33920685 + B1_Mm SINE Alu 2 140 -7 1 1255 183 100 0 0 chr11 87923182 87923212 -33920644 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1255 369 248 21 0 chr11 87923938 87924083 -33919773 + CT-rich Low_complexity Low_complexity 1 148 0 1 1255 726 206 0 46 chr11 87924096 87924249 -33919607 + B1_Mur1 SINE Alu 2 147 -2 1 1255 211 136 23 0 chr11 87924250 87924294 -33919562 + A-rich Low_complexity Low_complexity 2 46 0 1 1255 409 214 0 0 chr11 87924294 87924364 -33919492 - B1_Mur3 SINE Alu -77 72 3 1 1255 290 290 27 36 chr11 87924370 87924481 -33919375 - PB1D9 SINE Alu -37 112 3 1 1255 341 304 22 7 chr11 87924548 87924684 -33919172 - B1F1 SINE Alu -11 138 1 1 1255 522 0 0 0 chr11 87924687 87924745 -33919111 + (TTA)n Simple_repeat Simple_repeat 2 59 0 1 1255 450 94 0 0 chr11 87924904 87924968 -33918888 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1255 307 227 0 146 chr11 87925031 87925134 -33918722 - B4 SINE B4 -61 104 16 1 1255 264 291 82 59 chr11 87925151 87925286 -33918570 - MIR3 SINE MIR -69 139 2 1 1255 251 204 0 39 chr11 87926062 87926113 -33917743 + B4 SINE B4 47 95 -197 1 1255 801 284 19 14 chr11 87926128 87926342 -33917514 + B3 SINE B2 2 216 0 1 1255 443 248 62 0 chr11 87926366 87926479 -33917377 + PB1D9 SINE Alu 1 120 0 1 1255 342 275 130 158 chr11 87926481 87926604 -33917252 + B4 SINE B4 85 215 -77 1 1255 1100 83 0 7 chr11 87926604 87926750 -33917106 + B1_Mus1 SINE Alu 1 145 -3 1 1255 342 275 130 158 chr11 87926750 87926803 -33917053 + B4 SINE B4 216 256 -36 1 1255 492 18 0 0 chr11 87926818 87926875 -33916981 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1255 266 173 58 0 chr11 87926967 87927019 -33916837 + BC1_Mm scRNA scRNA 33 87 -65 1 1255 183 129 0 0 chr11 87927710 87927741 -33916115 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1255 824 145 14 48 chr11 87927766 87927911 -33915945 - B1_Mur2 SINE Alu -9 140 1 1 1255 476 264 76 43 chr11 87927926 87928136 -33915720 - ID_B1 SINE B4 -7 217 1 1 1255 445 294 164 0 chr11 87928229 87928375 -33915481 - MER91A DNA Tip100 -26 170 1 1 1255 279 0 0 0 chr11 87928653 87928684 -33915172 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1255 737 166 13 58 chr11 87929232 87929386 -33914470 - B1_Mur2 SINE Alu -2 147 1 1 1255 607 168 8 103 chr11 87929503 87929629 -33914227 + B1_Mur1 SINE Alu 36 149 0 1 1255 574 234 42 14 chr11 87929703 87929846 -33914010 - B1F SINE Alu -1 148 2 1 1255 244 324 88 18 chr11 87930483 87930596 -33913260 - MLT1M LTR MaLR -487 185 65 1 1255 202 265 20 0 chr11 87931204 87931253 -33912603 + MIRc SINE MIR 46 95 -173 1 1255 261 309 0 14 chr11 87931368 87931437 -33912419 + ID2 SINE ID 2 69 -14 1 1255 265 292 0 14 chr11 87931535 87931608 -33912248 + GA-rich Low_complexity Low_complexity 1 72 0 1 1255 814 204 20 0 chr11 87932031 87932178 -33911678 - B1_Mur4 SINE Alu 0 150 1 1 1255 230 0 33 0 chr11 87932178 87932208 -33911648 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1255 527 285 39 50 chr11 87933302 87933483 -33910373 + ID_B1 SINE B4 20 198 -26 1 1255 289 62 42 0 chr11 87933502 87933550 -33910306 + (GAGAA)n Simple_repeat Simple_repeat 1 50 0 1 1255 655 220 247 6 chr11 87933747 87933921 -33909935 + B3 SINE B2 1 216 0 1 1255 22 0 0 0 chr11 87934622 87934644 -33909212 + AT_rich Low_complexity Low_complexity 1 22 0 1 1255 847 123 0 16 chr11 87934658 87934782 -33909074 - B1_Mur4 SINE Alu -1 149 28 1 1255 268 156 56 144 chr11 87934702 87934792 -33909064 - RLTR25B LTR ERVK -519 509 428 1 1255 360 0 0 0 chr11 87934812 87934852 -33909004 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1255 694 219 0 15 chr11 87934867 87934997 -33908859 - RSINE1 SINE B4 -34 131 4 1 1255 423 221 9 37 chr11 87935001 87935109 -33908747 - PB1D7 SINE Alu 0 120 16 1 1255 757 212 69 32 chr11 87935684 87935883 -33907973 - B3 SINE B2 0 216 1 1 1255 214 333 12 24 chr11 87935979 87936062 -33907794 - ID4 SINE ID 0 83 2 1 1255 338 195 152 10 chr11 87936072 87936170 -33907686 - PB1 SINE Alu -2 125 13 1 1255 243 0 0 0 chr11 87936884 87936911 -33906945 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1255 964 100 0 0 chr11 87936920 87937050 -33906806 - B1_Mur4 SINE Alu -3 147 18 1 1255 468 0 0 0 chr11 87937221 87937273 -33906583 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1255 340 312 15 52 chr11 87937357 87937492 -33906364 - Charlie10 DNA MER1_type -2616 206 77 1 1255 23 33 0 0 chr11 87938045 87938075 -33905781 + AT_rich Low_complexity Low_complexity 1 30 0 1 1255 413 288 21 186 chr11 87938075 87938222 -33905634 - RSINE1 SINE B4 -6 159 43 1 1255 989 117 7 33 chr11 87938222 87938233 -33905623 - B1_Mus2 SINE Alu -1 146 137 1 1255 1401 6 0 0 chr11 87938233 87938391 -33905465 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 1 1255 989 117 7 33 chr11 87938391 87938529 -33905327 - B1_Mus2 SINE Alu -11 136 1 1 1255 413 288 21 186 chr11 87938529 87938569 -33905287 - RSINE1 SINE B4 -123 42 3 1 1255 250 250 41 14 chr11 87938660 87938733 -33905123 - B4A SINE B4 -217 75 1 1 1255 190 275 14 42 chr11 87939079 87939151 -33904705 + MIRc SINE MIR 63 132 -136 1 1255 919 235 44 10 chr11 87939189 87939395 -33904461 + B3 SINE B2 3 215 -1 1 1255 915 129 0 58 chr11 87940407 87940563 -33903293 - B1_Mus1 SINE Alu 0 148 2 1 1255 321 131 15 62 chr11 87940615 87940680 -33903176 + RLTR25B LTR ERVK 437 498 -530 1 1255 749 65 0 0 chr11 87940623 87940716 -33903140 + B1_Mus2 SINE Alu 42 134 -13 1 1255 237 208 99 49 chr11 87940869 87940950 -33902906 - PB1D10 SINE Alu -4 113 29 1 1255 3955 246 108 29 chr11 87941087 87942419 -33901437 - Lx9 LINE L1 -14 7630 6193 1 1255 327 267 0 167 chr11 87942438 87942564 -33901292 - PB1D10 SINE Alu 0 117 13 1 1255 387 0 0 0 chr11 87943161 87943204 -33900652 + (TTGG)n Simple_repeat Simple_repeat 3 45 0 1 1255 655 242 12 31 chr11 87943571 87943733 -33900123 - RSINE1 SINE B4 -6 159 1 1 1255 1078 139 198 0 chr11 87944289 87944476 -33899380 + URR1A DNA MER1_type 1 224 -2 1 1255 1296 27 0 0 chr11 87944708 87944855 -33899001 + B1_Mm SINE Alu 1 147 0 1 1255 243 0 0 0 chr11 87944855 87944882 -33898974 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1255 290 346 109 22 chr11 87944928 87945111 -33898745 + MIRb SINE MIR 41 239 -29 1 1255 969 164 0 0 chr11 87945150 87945296 -33898560 - B1_Mur2 SINE Alu -1 148 3 1 1255 438 333 0 7 chr11 87945809 87945951 -33897905 + MER5A1 DNA MER1_type 22 162 -4 1 1255 688 305 7 0 chr11 87946151 87946305 -33897551 + RSINE1 SINE B4 1 155 -10 1 1255 324 0 0 0 chr11 87946375 87946411 -33897445 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1255 1021 63 0 0 chr11 87946920 87947062 -33896794 - B1_Mus1 SINE Alu -1 147 6 1 1255 681 216 25 29 chr11 87947062 87947107 -33896749 - ID_B1 SINE B4 -1 223 37 1 1255 311 243 0 41 chr11 87947413 87947486 -33896370 - L1MC3 LINE L1 -722 7063 6994 1 1255 1113 204 14 5 chr11 87947516 87947728 -33896128 - B3 SINE B2 -1 215 2 1 1255 1256 48 0 0 chr11 87947778 87947925 -33895931 + B1_Mus1 SINE Alu 2 148 0 1 1255 763 148 0 69 chr11 87947970 87948115 -33895741 + B1_Mur2 SINE Alu 2 136 -13 1 1255 195 100 0 0 chr11 87948115 87948145 -33895711 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 1255 439 211 35 35 chr11 87948157 87948270 -33895586 + PB1D9 SINE Alu 2 114 -6 1 1255 861 196 0 39 chr11 87948367 87948521 -33895335 + B1_Mur2 SINE Alu 2 149 0 1 1255 253 302 133 100 chr11 87948984 87949056 -33894800 + MIR SINE MIR 75 151 -111 1 1255 649 146 192 16 chr11 87949056 87949181 -33894675 + B1_Mus2 SINE Alu 1 147 0 1 1255 253 302 133 100 chr11 87949181 87949288 -33894568 + MIR SINE MIR 152 260 -2 1 1256 217 286 60 0 chr11 87949464 87949548 -33894308 - MIRc SINE MIR -132 136 48 1 1256 275 364 17 0 chr11 87949781 87949899 -33893957 - Charlie2a DNA MER1_type -1207 1654 1535 1 1256 416 79 0 12 chr11 87949979 87950092 -33893764 - B2_Mm2 SINE B2 -1 194 47 1 1256 1399 57 22 11 chr11 87950105 87950283 -33893573 - B2_Mm2 SINE B2 -14 181 2 1 1256 343 270 71 110 chr11 87950283 87950437 -33893419 - B4 SINE B4 -39 253 106 1 1256 1171 39 7 7 chr11 87950508 87950662 -33893194 + (GGGAGA)n Simple_repeat Simple_repeat 4 157 0 1 1256 384 227 0 0 chr11 87950665 87950740 -33893116 - B4 SINE B4 -217 75 1 1 1256 304 342 115 18 chr11 87951474 87951700 -33892156 + MIRb SINE MIR 6 253 -15 1 1256 906 199 135 10 chr11 87951890 87952098 -33891758 + B4A SINE B4 2 235 -57 1 1256 225 159 0 0 chr11 87952141 87952185 -33891671 + GA-rich Low_complexity Low_complexity 1 44 0 1 1256 270 320 77 15 chr11 87954314 87954444 -33889412 + MIR SINE MIR 108 245 -17 1 1256 375 78 0 0 chr11 87954510 87954561 -33889295 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1 1256 354 295 0 9 chr11 87954880 87954986 -33888870 - B1F SINE Alu 0 149 45 1 1256 838 189 172 0 chr11 87955034 87955203 -33888653 - B3 SINE B2 -15 201 4 1 1256 498 111 12 0 chr11 87955219 87955300 -33888556 - B1_Mur3 SINE Alu 0 149 68 1 1256 747 257 10 18 chr11 87955359 87955566 -33888290 - B3 SINE B2 -6 210 7 1 1256 207 0 0 0 chr11 87955622 87955645 -33888211 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1256 270 0 0 0 chr11 87956181 87956211 -33887645 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1256 427 244 63 49 chr11 87956583 87956725 -33887131 + B1F SINE Alu 2 145 -4 1 1256 648 216 19 44 chr11 87956871 87957031 -33886825 - B3 SINE B2 -60 156 1 1 1256 552 235 88 0 chr11 87957185 87957321 -33886535 + RSINE1 SINE B4 4 151 -14 1 1256 666 241 117 30 chr11 87957336 87957533 -33886323 + ID_B1 SINE B4 1 214 -10 1 1256 272 91 0 22 chr11 87957852 87957897 -33885959 + (GGA)n Simple_repeat Simple_repeat 2 45 0 1 1256 456 19 0 0 chr11 87958094 87958147 -33885709 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1256 415 345 17 22 chr11 87958683 87958861 -33884995 + B4A SINE B4 112 288 -4 1 1256 405 0 0 0 chr11 87958870 87958915 -33884941 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1256 271 253 10 31 chr11 87958936 87959034 -33884822 + MER3 DNA MER1_type 104 199 -10 1 1256 993 282 133 0 chr11 87959638 87959961 -33883895 + MER47A DNA MER2_type 1 366 0 1 1256 473 266 28 0 chr11 87960602 87960711 -33883145 - RSINE1 SINE B4 -13 152 41 1 1256 360 0 0 0 chr11 87960757 87960797 -33883059 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 1 1256 792 230 91 0 chr11 87960808 87960995 -33882861 - ID_B1 SINE B4 -20 204 1 1 1256 1470 273 111 21 chr11 87960996 87961291 -33882565 - L1MB4 LINE L1 -44 6136 5794 1 1256 198 0 0 0 chr11 87961291 87961313 -33882543 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 1256 1470 273 111 21 chr11 87961313 87961574 -33882282 - L1MB4 LINE L1 -387 5793 5530 1 1256 535 236 7 79 chr11 87961617 87961769 -33882087 + ID_B1 SINE B4 82 222 -2 1 1256 716 114 35 64 chr11 87961774 87961915 -33881941 + B1_Mur4 SINE Alu 14 150 0 1 1256 290 159 0 0 chr11 87963089 87963133 -33880723 - ID_B1 SINE B4 -17 207 164 1 1256 1462 78 16 0 chr11 87963213 87963404 -33880452 + B2_Mm2 SINE B2 2 195 0 1 1256 1214 43 0 0 chr11 87963414 87963553 -33880303 + B1_Mus2 SINE Alu 1 139 -8 1 1256 221 0 0 33 chr11 87963553 87963583 -33880273 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1256 392 258 43 108 chr11 87963840 87963979 -33879877 - RSINE1 SINE B4 -8 157 28 1 1256 246 94 0 0 chr11 87963982 87964014 -33879842 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 1 1256 757 200 0 16 chr11 87964015 87964198 -33879658 + CT-rich Low_complexity Low_complexity 1 180 0 1 1256 582 285 0 0 chr11 87964222 87964359 -33879497 - ID_B1 SINE B4 -3 221 85 1 1256 207 167 0 0 chr11 87964359 87964395 -33879461 + C-rich Low_complexity Low_complexity 1 36 0 1 1256 295 319 17 34 chr11 87964896 87965013 -33878843 - PB1D10 SINE Alu -1 116 2 1 1256 280 339 132 0 chr11 87965550 87965671 -33878185 + MIRb SINE MIR 51 187 -81 1 1256 430 236 19 157 chr11 87965929 87966145 -33877711 - B2_Mm2 SINE B2 -9 186 1 1 1256 198 0 0 0 chr11 87966754 87966776 -33877080 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1256 319 231 62 0 chr11 87966823 87966888 -33876968 - B4 SINE B4 -86 206 138 1 1256 681 236 117 15 chr11 87966918 87967124 -33876732 - B4 SINE B4 -65 227 1 1 1256 680 197 30 8 chr11 87967151 87967284 -33876572 - B1_Mur1 SINE Alu -1 148 13 1 1256 382 296 95 8 chr11 87967835 87967961 -33875895 - MIR3 SINE MIR -28 180 44 1 1256 216 289 137 24 chr11 87967996 87968120 -33875736 - MER5A DNA MER1_type -16 173 36 1 1256 724 275 42 28 chr11 87968257 87968470 -33875386 - ID_B1 SINE B4 -8 216 1 1 1256 207 0 0 0 chr11 87970871 87970894 -33872962 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1 1256 1032 104 0 0 chr11 87970894 87971028 -33872828 - B1_Mus2 SINE Alu -13 134 1 1 1256 553 292 27 33 chr11 87971115 87971299 -33872557 + ID_B1 SINE B4 2 184 -40 1 1256 442 319 132 0 chr11 87971302 87971515 -33872341 + MIRb SINE MIR 27 267 -1 1 1256 279 288 38 0 chr11 87971537 87971617 -33872239 + ID4_ SINE ID 1 83 0 1 1256 838 140 0 8 chr11 87971908 87972038 -33871818 + B2_Mm2 SINE B2 1 129 -66 1 1256 551 318 31 20 chr11 87973055 87973251 -33870605 + MIR SINE MIR 29 226 -36 1 1256 798 177 14 14 chr11 87973308 87973451 -33870405 - B1_Mur1 SINE Alu -5 144 2 1 1256 691 258 19 25 chr11 87973495 87973654 -33870202 - RSINE1 SINE B4 -4 161 4 1 1256 481 200 26 43 chr11 87973657 87973772 -33870084 - PB1D9 SINE Alu -1 119 7 1 1256 858 216 20 50 chr11 87974326 87974526 -33869330 - B3A SINE B2 0 198 5 1 1256 237 33 0 0 chr11 87975039 87975069 -33868787 + (CG)n Simple_repeat Simple_repeat 2 31 0 1 1256 828 0 0 0 chr11 87975069 87975160 -33868696 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1256 1426 22 12 19 chr11 87975941 87976262 -33867594 + (GGGAGA)n Simple_repeat Simple_repeat 1 319 0 1 1256 732 299 5 5 chr11 87976957 87977155 -33866701 - ID_B1 SINE B4 -26 198 1 1 1256 216 0 0 0 chr11 87977405 87977429 -33866427 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1256 1198 49 0 7 chr11 87977429 87977567 -33866289 - B1_Mus2 SINE Alu -9 138 1 1 1256 1698 26 0 0 chr11 87977584 87977776 -33866080 - B2_Mm1a SINE B2 0 193 2 1 1256 248 317 82 55 chr11 87978832 87978942 -33864914 + MIRc SINE MIR 38 150 -118 1 1256 216 0 0 0 chr11 87979064 87979088 -33864768 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1256 756 216 0 0 chr11 87980570 87980709 -33863147 + ID_B1 SINE B4 86 224 0 1 1256 503 233 51 64 chr11 87980743 87980899 -33862957 + RSINE1 SINE B4 10 163 -2 1 1256 1243 48 0 13 chr11 87980940 87981089 -33862767 - B1_Mus1 SINE Alu -1 147 1 1 1256 729 161 0 24 chr11 87981183 87981310 -33862546 + B1_Mur4 SINE Alu 6 129 -21 1 1256 423 0 0 0 chr11 87981868 87981915 -33861941 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1256 629 219 0 31 chr11 87981916 87982043 -33861813 - RSINE1 SINE B4 -41 124 2 1 1256 631 286 60 32 chr11 87982046 87982263 -33861593 - ID_B1 SINE B4 0 224 2 1 1256 302 214 0 0 chr11 87982534 87982590 -33861266 + PB1D10 SINE Alu 1 56 -61 1 1256 258 271 0 54 chr11 87982590 87982607 -33861249 + B4A SINE B4 86 154 -138 1 1256 299 216 38 121 chr11 87982601 87982630 -33861226 + MT2B LTR ERVL 137 154 -447 1 1256 677 149 13 151 chr11 87982630 87982802 -33861054 + B1_Mur4 SINE Alu 1 147 -2 1 1256 243 239 0 0 chr11 87982838 87982905 -33860951 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1256 875 156 0 0 chr11 87984079 87984218 -33859638 - B1_Mur3 SINE Alu 0 149 11 1 1256 2056 135 93 3 chr11 87984218 87984596 -33859260 + BGLII_B LTR ERVK 2 413 -28 1 1256 228 288 96 0 chr11 87984596 87984669 -33859187 - ID4_ SINE ID -2 81 2 1 1256 435 223 0 11 chr11 87984741 87984836 -33859020 - PB1D10 SINE Alu -23 94 1 1 1256 653 245 187 24 chr11 87985151 87985402 -33858454 - B4 SINE B4 0 292 1 1 1256 256 192 0 55 chr11 87987763 87987818 -33856038 + PB1 SINE Alu 69 125 -2 1 1256 302 293 0 0 chr11 87987825 87987900 -33855956 + ID4_ SINE ID 9 83 0 1 1256 3614 23 0 0 chr11 87988158 87988554 -33855302 - MTA_Mm LTR MaLR 0 396 1 1 1256 9546 21 11 0 chr11 87988554 87989640 -33854216 - MTA_Mm-int LTR MaLR 0 1098 1 1 1256 1703 37 5 0 chr11 87989640 87989858 -33853998 - MTA_Mm LTR MaLR 0 396 178 1 1256 297 109 0 0 chr11 87989892 87989938 -33853918 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1256 1549 21 0 0 chr11 87990243 87990435 -33853421 - MTA_Mm LTR MaLR -204 192 1 1 1256 703 306 33 37 chr11 87991083 87991327 -33852529 + B4A SINE B4 1 243 -49 1 1256 382 277 108 13 chr11 87991480 87991637 -33852219 - MER117 DNA MER1_type -24 173 2 1 1256 186 292 31 0 chr11 87992062 87992127 -33851729 - MIR3 SINE MIR -32 176 110 1 1256 1989 25 21 4 chr11 87992416 87992656 -33851200 - L1Md_F3 LINE L1 -1 6583 6340 1 1256 771 171 62 0 chr11 87992695 87992824 -33851032 - B1_Mur4 SINE Alu -13 137 1 1 1256 720 268 129 40 chr11 87992854 87993180 -33850676 - ORR1E LTR MaLR -2 357 3 1 1256 558 0 0 0 chr11 87993216 87993278 -33850578 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1256 930 149 0 0 chr11 87995187 87995438 -33848418 + (TG)n Simple_repeat Simple_repeat 1 251 0 1 1256 189 171 0 0 chr11 87997437 87997472 -33846384 + GA-rich Low_complexity Low_complexity 3 37 0 1 1256 189 0 0 0 chr11 87997578 87997599 -33846257 + (TGG)n Simple_repeat Simple_repeat 3 23 0 1 1256 843 84 7 30 chr11 87997599 87997734 -33846122 + B1_Mur4 SINE Alu 19 150 0 1 1256 323 330 9 0 chr11 87997768 87997883 -33845973 + PB1D10 SINE Alu 2 117 0 1 1256 432 82 0 0 chr11 87997985 87998046 -33845810 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1256 247 149 0 78 chr11 87998787 87998838 -33845018 + B3 SINE B2 1 47 -169 1 1256 216 222 0 0 chr11 87998858 87998887 -33844969 + A-rich Low_complexity Low_complexity 2 30 0 1 1256 1168 82 0 0 chr11 87998887 87999034 -33844822 + B1_Mus2 SINE Alu 1 147 0 1 1256 216 222 0 0 chr11 87999034 87999058 -33844798 + A-rich Low_complexity Low_complexity 31 54 0 1 1256 1123 107 11 0 chr11 87999058 87999236 -33844620 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1256 681 204 6 30 chr11 87999236 87999403 -33844453 + B2_Mm2 SINE B2 31 193 -2 1 1256 293 333 58 0 chr11 88000116 88000236 -33843620 - MER63B DNA AcHobo -3 433 307 1 1256 180 0 0 0 chr11 88001906 88001926 -33841930 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1256 484 162 0 133 chr11 88002639 88002767 -33841089 + MT2B LTR ERVL 154 264 -337 3 1256 1000 135 0 0 chr11 88002661 88002802 -33841054 + B1_Mur3 SINE Alu 9 149 0 4 1256 993 175 0 17 chr11 88002806 88002986 -33840870 + B2_Mm2 SINE B2 1 177 -18 5 1256 655 105 26 0 chr11 88003032 88003146 -33840710 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 6 1256 324 248 78 84 chr11 88003266 88003433 -33840423 - MIR3 SINE MIR -32 176 5 7 1256 332 234 42 62 chr11 88003790 88004031 -33839825 + RMER17D LTR ERVK 297 532 -357 8 1256 490 267 16 8 chr11 88003934 88004055 -33839801 - ID_B1 SINE B4 -23 201 80 9 1256 917 157 0 0 chr11 88005535 88005675 -33838181 - B1_Mur4 SINE Alu -6 144 5 1 1256 246 62 0 0 chr11 88006408 88006440 -33837416 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 1 1256 234 136 68 0 chr11 88007433 88007477 -33836379 + LTR88a LTR Gypsy 6 52 -764 1 1256 270 0 0 0 chr11 88008610 88008640 -33835216 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1256 22 35 0 0 chr11 88008641 88008670 -33835186 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 1241 48 0 0 chr11 88008680 88008825 -33835031 + B1_Mm SINE Alu 2 146 -1 1 1256 23 0 0 0 chr11 88008825 88008848 -33835008 + AT_rich Low_complexity Low_complexity 1 23 0 1 1256 191 346 0 0 chr11 88008870 88008922 -33834934 + MER5A DNA MER1_type 133 184 -5 1 1256 351 264 131 7 chr11 88008929 88009074 -33834782 + RSINE1 SINE B4 3 165 0 1 1256 1222 42 0 20 chr11 88009110 88009247 -33834609 + B1_Mus1 SINE Alu 2 137 -11 1 1256 216 0 0 0 chr11 88009247 88009271 -33834585 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1256 1451 52 20 35 chr11 88009288 88009486 -33834370 + B2_Mm2 SINE B2 1 195 0 2 1256 205 279 62 12 chr11 88009611 88009691 -33834165 - MER5B DNA MER1_type -91 87 4 2 1256 330 361 58 62 chr11 88010183 88010440 -33833416 - MIR SINE MIR 0 262 7 2 1256 468 0 0 0 chr11 88010757 88010809 -33833047 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1256 718 191 15 0 chr11 88011111 88011242 -33832614 - B1_Mus1 SINE Alu -2 146 14 2 1256 377 292 20 34 chr11 88011242 88011257 -33832599 - ID_B1 SINE B4 0 221 78 2 1256 303 279 25 83 chr11 88011464 88011517 -33832339 + MER5A1 DNA MER1_type 24 70 -96 2 1256 1109 153 16 21 chr11 88011517 88011704 -33832152 + B2_Mm2 SINE B2 2 187 -8 2 1256 738 0 0 0 chr11 88011704 88011786 -33832070 + (GAGAA)n Simple_repeat Simple_repeat 2 83 0 2 1256 303 279 25 83 chr11 88011786 88011852 -33832004 + MER5A1 DNA MER1_type 71 136 -30 2 1256 474 272 24 13 chr11 88012196 88012332 -33831524 - PB1D10 SINE Alu -2 146 9 3 1256 195 274 0 19 chr11 88012352 88012404 -33831452 - MIR SINE MIR -101 161 111 3 1256 279 0 0 0 chr11 88012558 88012589 -33831267 + (CAGG)n Simple_repeat Simple_repeat 4 34 0 3 1256 432 0 0 0 chr11 88012924 88012972 -33830884 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1256 345 191 0 73 chr11 88012972 88013040 -33830816 - B1F SINE Alu -9 140 78 3 1256 263 241 0 132 chr11 88013040 88013063 -33830793 - ID_B1 SINE B4 -9 215 137 3 1256 425 325 8 0 chr11 88013111 88013228 -33830628 + RSINE1 SINE B4 3 120 -45 3 1256 264 264 58 88 chr11 88013558 88013695 -33830161 - LTR33 LTR ERVL -299 216 84 3 1256 430 363 83 0 chr11 88013705 88013873 -33829983 - ID_B1 SINE B4 -38 186 5 3 1256 373 245 28 19 chr11 88013893 88014001 -33829855 + ID_B1 SINE B4 68 176 -48 3 1256 569 142 75 0 chr11 88013910 88014016 -33829840 + PB1D9 SINE Alu 6 119 -1 4 1256 396 300 0 10 chr11 88014168 88014269 -33829587 + PB1D10 SINE Alu 15 114 -3 4 1256 453 36 0 0 chr11 88015072 88015127 -33828729 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1256 801 170 22 0 chr11 88015129 88015264 -33828592 - B1_Mus1 SINE Alu -8 140 3 4 1256 527 263 128 22 chr11 88015273 88015452 -33828404 - B3A SINE B2 0 198 1 4 1256 187 286 129 40 chr11 88015586 88015710 -33828146 + MIRc SINE MIR 26 160 -108 4 1256 564 15 0 0 chr11 88015953 88016018 -33827838 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1256 1300 82 60 0 chr11 88016109 88016293 -33827563 - B2_Mm2 SINE B2 0 195 1 4 1256 702 178 21 69 chr11 88016475 88016620 -33827236 - B1_Mur4 SINE Alu -4 146 9 4 1256 457 303 6 94 chr11 88016620 88016636 -33827220 - B4 SINE B4 -60 179 77 4 1256 771 174 20 20 chr11 88016675 88016822 -33827034 - B1_Mur4 SINE Alu 0 150 4 5 1256 1096 232 10 0 chr11 88016841 88017048 -33826808 - B3 SINE B2 -6 210 2 5 1256 189 94 0 0 chr11 88017052 88017084 -33826772 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 5 1256 205 243 69 28 chr11 88017418 88017490 -33826366 + MIR3 SINE MIR 84 158 -50 5 1256 394 240 192 0 chr11 88018267 88018392 -33825464 + B1F1 SINE Alu 1 149 0 5 1256 459 189 93 19 chr11 88018397 88018505 -33825351 + ID_B1 SINE B4 88 203 -21 5 1256 1073 63 7 34 chr11 88018920 88019068 -33824788 - B2_Mm2 SINE B2 -50 145 2 5 1256 295 305 69 61 chr11 88019130 88019332 -33824524 - MIRb SINE MIR -14 248 34 5 1256 180 0 0 0 chr11 88019493 88019513 -33824343 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 5 1256 1250 107 28 0 chr11 88019513 88019691 -33824165 - B2_Mm2 SINE B2 -11 184 2 5 1256 297 233 0 0 chr11 88019752 88019812 -33824044 - B1F2 SINE Alu -88 61 2 6 1256 424 289 98 64 chr11 88019980 88020183 -33823673 - MT2B LTR ERVL -217 384 175 6 1256 1073 44 7 14 chr11 88020046 88020184 -33823672 - B1_Mus2 SINE Alu -1 146 10 6 1256 308 287 0 30 chr11 88020079 88020248 -33823608 - ORR1B1-int LTR MaLR -750 759 596 6 1256 303 56 18 36 chr11 88020304 88020360 -33823496 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 6 1256 1289 34 0 0 chr11 88020361 88020507 -33823349 - B1_Mus1 SINE Alu 0 148 3 6 1256 436 277 34 51 chr11 88020646 88020764 -33823092 + PB1D10 SINE Alu 6 121 -28 6 1256 224 278 0 0 chr11 88020755 88020809 -33823047 + ID4_ SINE ID 8 61 -22 6 1256 36 0 0 0 chr11 88021034 88021070 -33822786 + AT_rich Low_complexity Low_complexity 1 36 0 6 1256 246 177 227 10 chr11 88021403 88021500 -33822356 - B1F2 SINE Alu 0 149 32 6 1256 307 301 62 68 chr11 88022150 88022206 -33821650 + L1MB5 LINE L1 6007 6062 -112 7 1256 800 236 12 12 chr11 88022206 88022369 -33821487 + RSINE1 SINE B4 3 165 0 7 1256 307 301 62 68 chr11 88022369 88022458 -33821398 + L1MB5 LINE L1 6063 6151 -23 7 1256 601 263 72 7 chr11 88022480 88022633 -33821223 - RSINE1 SINE B4 0 165 3 7 1256 790 309 50 8 chr11 88022735 88022996 -33820860 + B4A SINE B4 19 290 -2 7 1256 465 19 0 0 chr11 88023009 88023063 -33820793 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1256 411 21 0 0 chr11 88023815 88023863 -33819993 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1256 188 159 0 102 chr11 88024799 88024848 -33819008 + L2b LINE L2 3332 3375 0 7 1256 3042 166 25 6 chr11 88025379 88025986 -33817870 + RMER1B Other Other 220 898 -168 7 1256 800 196 19 0 chr11 88026001 88026159 -33817697 - RMER1A Other Other -840 190 30 7 1256 597 233 85 43 chr11 88026161 88026349 -33817507 + B4 SINE B4 97 292 0 7 1256 1223 224 80 107 chr11 88026437 88026859 -33816997 - RMER4A LTR ERVK -4 462 55 8 1256 1411 82 5 0 chr11 88026859 88027043 -33816813 + B2_Mm1t SINE B2 1 185 -8 8 1256 1223 224 80 107 chr11 88027043 88027058 -33816798 - RMER4A LTR ERVK -412 54 46 8 1256 1220 108 43 0 chr11 88027058 88027243 -33816613 - B2_Mm1a SINE B2 0 193 1 8 1256 1223 224 80 107 chr11 88027243 88027279 -33816577 - RMER4A LTR ERVK -421 45 1 8 1256 270 247 0 0 chr11 88028123 88028200 -33815656 + (TGG)n Simple_repeat Simple_repeat 2 78 0 8 1256 240 111 0 0 chr11 88028264 88028300 -33815556 + (CCCTAA)n Simple_repeat Simple_repeat 5 40 0 8 1256 1161 221 24 93 chr11 88028325 88028615 -33815241 + B4 SINE B4 1 270 -22 8 1256 383 214 14 0 chr11 88028621 88028691 -33815165 + B1F SINE Alu 18 88 -61 8 1256 440 207 78 43 chr11 88030575 88030691 -33813165 + PB1D9 SINE Alu 1 120 0 8 1256 222 34 0 33 chr11 88030703 88030733 -33813123 - PB1D9 SINE Alu -13 107 79 8 1256 684 173 126 0 chr11 88030782 88030909 -33812947 - B1_Mur4 SINE Alu -6 144 2 8 1256 1086 75 0 20 chr11 88030931 88031081 -33812775 - B1_Mus1 SINE Alu 0 148 2 9 1256 1528 42 5 55 chr11 88031082 88031284 -33812572 - B2_Mm1t SINE B2 -1 192 1 9 1256 489 218 93 6 chr11 88031456 88031576 -33812280 - ID_B1 SINE B4 -29 195 76 9 1256 639 204 149 25 chr11 88032864 88033025 -33810831 + B3A SINE B2 1 181 -17 9 1256 790 197 0 0 chr11 88033046 88033183 -33810673 + B1_Mur3 SINE Alu 1 137 -12 9 1256 414 0 0 0 chr11 88033183 88033229 -33810627 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 9 1256 494 239 94 200 chr11 88033229 88033464 -33810392 + B3 SINE B2 1 210 -6 9 1256 252 0 0 0 chr11 88033675 88033703 -33810153 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1256 186 43 0 0 chr11 88033837 88033860 -33809996 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1256 272 221 87 14 chr11 88034037 88034106 -33809750 - ID4 SINE ID -6 77 4 9 1256 652 191 18 0 chr11 88034219 88034329 -33809527 + RSINE1 SINE B4 15 126 -39 1 1256 1274 104 16 21 chr11 88034361 88034547 -33809309 - B2_Mm2 SINE B2 -10 185 1 1 1256 635 191 6 0 chr11 88034577 88034739 -33809117 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1256 1058 256 32 18 chr11 88034741 88034764 -33809092 - B4 SINE B4 0 292 265 1 1256 1032 146 0 0 chr11 88034764 88034942 -33808914 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1256 1058 256 32 18 chr11 88034942 88035200 -33808656 - B4 SINE B4 -28 264 8 1 1256 663 244 90 20 chr11 88036528 88036717 -33807139 + ID_B1 SINE B4 4 209 -15 1 1256 342 0 0 0 chr11 88036717 88036755 -33807101 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1256 663 244 90 20 chr11 88036755 88036766 -33807090 + ID_B1 SINE B4 210 217 -7 1 1256 365 272 65 0 chr11 88036770 88036862 -33806994 - PB1D9 SINE Alu -3 117 20 1 1256 304 263 19 83 chr11 88037062 88037170 -33806686 - B3A SINE B2 -1 197 97 1 1256 631 288 0 0 chr11 88037243 88037382 -33806474 - ID_B1 SINE B4 -8 216 78 1 1256 552 209 40 67 chr11 88037382 88037531 -33806325 - B1F SINE Alu 0 149 5 1 1256 1074 97 20 7 chr11 88037711 88037857 -33805999 + B1_Mur3 SINE Alu 1 148 -1 1 1256 638 258 45 0 chr11 88037879 88038011 -33805845 + ID_B1 SINE B4 17 154 -70 1 1256 258 32 0 0 chr11 88038026 88038057 -33805799 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1256 199 278 69 40 chr11 88038126 88038227 -33805629 - L2 LINE L2 -1682 1737 1634 1 1256 911 190 0 6 chr11 88038390 88038549 -33805307 + B3 SINE B2 57 214 -2 1 1256 681 304 0 0 chr11 88038713 88038874 -33804982 + RSINE1 SINE B4 5 165 0 1 1256 704 344 106 40 chr11 88039557 88039933 -33803923 - LTR16A LTR ERVL 0 451 51 1 1256 297 305 66 28 chr11 88040614 88040796 -33803060 - ERVL-E-int LTR ERVL -2313 3354 3166 1 1256 457 248 67 0 chr11 88041253 88041358 -33802498 + RSINE1 SINE B4 25 136 -29 1 1256 351 278 0 69 chr11 88041413 88041529 -33802327 + ID_B1 SINE B4 50 157 -67 1 1256 426 175 0 59 chr11 88041462 88041547 -33802309 + PB1D10 SINE Alu 10 89 -28 1 1256 739 196 7 13 chr11 88042410 88042560 -33801296 - B1_Mur1 SINE Alu 0 149 1 1 1256 335 274 35 62 chr11 88042730 88042843 -33801013 - PB1D9 SINE Alu -8 112 3 1 1256 1312 56 25 0 chr11 88042846 88043296 -33800560 + (TCTA)n Simple_repeat Simple_repeat 1 461 0 1 1256 435 255 32 0 chr11 88043306 88043400 -33800456 - PB1D10 SINE Alu -18 99 3 1 1256 306 267 115 62 chr11 88043577 88043673 -33800183 + PB1D7 SINE Alu 19 119 -1 1 1256 205 104 0 127 chr11 88043970 88044025 -33799831 + A-rich Low_complexity Low_complexity 4 51 0 1 1256 995 210 28 38 chr11 88044193 88044406 -33799450 + B3 SINE B2 1 211 -5 1 1256 3748 158 24 194 chr11 88044468 88045661 -33798195 + RMER1A Other Other 47 1055 -11 1 1256 898 136 0 52 chr11 88045771 88045926 -33797930 + B1_Mus1 SINE Alu 1 147 -1 1 1256 315 0 0 0 chr11 88045946 88045981 -33797875 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1256 787 234 80 16 chr11 88045982 88046169 -33797687 - B3 SINE B2 -17 199 1 1 1256 1369 293 87 17 chr11 88046180 88046708 -33797148 - Lx9 LINE L1 -5 7639 7075 1 1256 251 254 227 0 chr11 88046863 88046973 -33796883 - Lx8 LINE L1 -379 7094 6960 1 1256 654 118 0 0 chr11 88048193 88048295 -33795561 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 1 1256 198 0 0 0 chr11 88049078 88049100 -33794756 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1256 317 202 0 71 chr11 88049835 88049920 -33793936 + ID4 SINE ID 3 81 -2 1 1256 891 258 103 97 chr11 88049920 88050406 -33793450 - MLT1D LTR MaLR -27 478 1 1 1256 180 97 0 0 chr11 88050657 88050688 -33793168 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1256 953 147 0 26 chr11 88050959 88051113 -33792743 + B1_Mur4 SINE Alu 1 150 0 1 1256 198 103 0 0 chr11 88051181 88051210 -33792646 + (TAAAAA)n Simple_repeat Simple_repeat 4 32 0 1 1256 857 226 5 35 chr11 88051212 88051409 -33792447 + B3A SINE B2 1 191 -7 1 1256 370 298 74 24 chr11 88051810 88052050 -33791806 + L1M5 LINE L1 5318 5568 -2314 1 1256 679 213 25 78 chr11 88052105 88052309 -33791547 - B3A SINE B2 -1 197 5 1 1256 311 316 65 0 chr11 88052494 88052633 -33791223 + MER70-int LTR ERVL 1783 1930 -3093 1 1256 291 98 49 0 chr11 88052969 88053030 -33790826 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 1 1256 559 165 20 40 chr11 88053030 88053131 -33790725 - B1_Mur3 SINE Alu -5 144 46 1 1256 1157 72 0 0 chr11 88053194 88053332 -33790524 - B1_Mus2 SINE Alu -8 139 2 1 1256 197 159 23 0 chr11 88053346 88053390 -33790466 + (CATAA)n Simple_repeat Simple_repeat 3 47 0 1 1256 727 206 7 7 chr11 88053665 88053812 -33790044 + B1_Mur1 SINE Alu 2 148 -1 1 1256 257 315 27 27 chr11 88053865 88053940 -33789916 + ID_B1 SINE B4 41 115 -109 1 1256 471 118 0 0 chr11 88053962 88054038 -33789818 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1256 467 259 0 18 chr11 88055110 88055220 -33788636 + B1F SINE Alu 21 128 -21 1 1256 273 190 0 33 chr11 88055186 88055246 -33788610 + B1_Mm SINE Alu 64 121 -26 1 1256 211 255 21 0 chr11 88055220 88055267 -33788589 + B1F1 SINE Alu 69 116 -33 1 1256 1011 60 97 0 chr11 88055783 88055917 -33787939 + B1_Mus2 SINE Alu 1 147 0 1 1256 216 0 0 0 chr11 88055917 88055941 -33787915 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1256 794 189 21 14 chr11 88056127 88056272 -33787584 - B1_Mur4 SINE Alu -4 146 1 1 1256 888 230 55 25 chr11 88056447 88056648 -33787208 + B3 SINE B2 3 209 -7 1 1256 888 133 7 15 chr11 88056700 88056837 -33787019 + B1_Mur4 SINE Alu 1 136 -14 1 1256 192 40 0 0 chr11 88056837 88056862 -33786994 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1256 301 273 15 0 chr11 88056871 88056937 -33786919 + ID4 SINE ID 3 69 -14 1 1256 297 183 0 0 chr11 88056971 88057031 -33786825 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1256 626 242 40 0 chr11 88057065 88057189 -33786667 - B1_Mur1 SINE Alu -19 130 2 1 1256 279 93 0 0 chr11 88057211 88057254 -33786602 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1256 220 246 15 30 chr11 88057450 88057517 -33786339 + PB1D9 SINE Alu 36 101 -19 1 1256 1429 216 64 3 chr11 88057522 88057820 -33786036 - ORR1D2 LTR MaLR 0 370 55 1 1256 197 65 32 0 chr11 88058042 88058073 -33785783 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 1 1256 1319 65 42 32 chr11 88058560 88058750 -33785106 + B2_Mm1a SINE B2 2 193 0 1 1256 1130 191 29 5 chr11 88058796 88059001 -33784855 + B3 SINE B2 2 211 -5 1 1256 319 323 126 35 chr11 88059271 88059470 -33784386 - L1M5 LINE L1 -370 5754 5538 1 1256 291 122 0 0 chr11 88059502 88059543 -33784313 + B3A SINE B2 1 41 -157 1 1256 1592 27 22 0 chr11 88059543 88059728 -33784128 + B2_Mm1a SINE B2 1 189 -4 1 1256 664 181 17 0 chr11 88059746 88059862 -33783994 + B3A SINE B2 27 144 -54 1 1256 291 54 0 0 chr11 88059899 88059936 -33783920 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1256 1104 59 0 0 chr11 88059958 88060093 -33783763 + B1_Mus2 SINE Alu 1 135 -12 1 1256 453 36 0 0 chr11 88060094 88060149 -33783707 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 1 1256 359 269 94 103 chr11 88060459 88060662 -33783194 + ORR1D2 LTR MaLR 169 369 -1 1 1256 1169 49 28 0 chr11 88060686 88060829 -33783027 + B1_Mus2 SINE Alu 1 147 0 1 1256 486 0 0 0 chr11 88061267 88061321 -33782535 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1256 441 0 0 0 chr11 88061321 88061369 -33782487 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1256 249 316 57 105 chr11 88061657 88061866 -33781990 + RLTR41 LTR ERV1 186 384 -62 1 1256 551 283 135 13 chr11 88062245 88062474 -33781382 + B4A SINE B4 1 257 -35 1 1256 378 74 0 0 chr11 88062493 88062547 -33781309 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1256 218 215 0 12 chr11 88062547 88062627 -33781229 + GA-rich Low_complexity Low_complexity 1 79 0 1 1256 291 71 0 0 chr11 88063472 88063514 -33780342 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1256 756 257 7 7 chr11 88063518 88063667 -33780189 - RSINE1 SINE B4 -16 149 1 1 1256 355 289 152 23 chr11 88063784 88063961 -33779895 - L2a LINE L2 0 3426 3227 1 1256 339 321 53 0 chr11 88064307 88064438 -33779418 - L2a LINE L2 -705 2714 2577 1 1256 679 237 189 17 chr11 88064443 88064623 -33779233 + ID_B1 SINE B4 7 217 -7 1 1256 228 325 78 23 chr11 88064858 88064987 -33778869 - L2a LINE L2 -1332 2087 1952 1 1256 328 248 110 34 chr11 88065502 88065648 -33778208 - MIRb SINE MIR -54 214 58 1 1256 191 58 18 88 chr11 88066761 88066818 -33777038 + C-rich Low_complexity Low_complexity 2 54 0 1 1256 359 226 40 55 chr11 88067135 88067253 -33776603 - PB1D10 SINE Alu -21 129 15 1 1256 1055 113 0 0 chr11 88068204 88068345 -33775511 + B1_Mus1 SINE Alu 2 142 -6 1 1256 330 26 0 0 chr11 88068347 88068386 -33775470 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 1256 690 328 6 0 chr11 88068422 88068596 -33775260 - B3A SINE B2 -22 176 2 1 1256 252 0 0 0 chr11 88068619 88068647 -33775209 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1256 813 199 7 0 chr11 88068664 88068800 -33775056 - B1_Mur4 SINE Alu -13 137 1 1 1256 313 263 12 50 chr11 88068868 88068948 -33774908 - B3A SINE B2 -121 77 1 1 1256 962 260 152 7 chr11 88069472 88069782 -33774074 - MLT1A0 LTR MaLR -1 364 10 1 1256 226 281 0 0 chr11 88070062 88070126 -33773730 - L1M5 LINE L1 -513 5611 5548 1 1256 3278 50 5 15 chr11 88070141 88070544 -33773312 + MTB LTR MaLR 2 400 0 2 1256 311 301 162 0 chr11 88070582 88070718 -33773138 - HAL1-3A_ME LINE L1 -417 2441 2284 2 1256 258 156 0 0 chr11 88070720 88070765 -33773091 + CT-rich Low_complexity Low_complexity 1 45 0 2 1256 351 0 0 0 chr11 88070765 88070804 -33773052 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 1256 1090 211 24 29 chr11 88070806 88071016 -33772840 - B3 SINE B2 -7 209 1 2 1256 709 219 81 56 chr11 88071250 88071448 -33772408 - MER58A DNA MER1_type -17 207 5 2 1256 597 235 100 56 chr11 88071815 88071995 -33771861 + B3A SINE B2 10 197 -1 2 1256 430 253 172 44 chr11 88072693 88072896 -33770960 + MLT1J LTR MaLR 230 458 -54 2 1256 1223 180 19 19 chr11 88073558 88073773 -33770083 + B3 SINE B2 2 216 0 2 1256 279 281 28 94 chr11 88073784 88073808 -33770048 + MT2B2 LTR ERVL 143 159 -425 2 1256 327 274 48 0 chr11 88073808 88073892 -33769964 + B1F1 SINE Alu 1 88 -61 2 1256 315 0 0 0 chr11 88073904 88073939 -33769917 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1256 450 0 0 0 chr11 88076591 88076641 -33767215 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1256 1273 41 0 0 chr11 88077044 88077190 -33766666 - B1_Mus2 SINE Alu -1 146 1 2 1256 279 0 0 0 chr11 88077196 88077227 -33766629 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1256 263 238 191 0 chr11 88077783 88077888 -33765968 + MLT1H LTR MaLR 51 175 -374 2 1256 2140 110 30 45 chr11 88077916 88078248 -33765608 + ORR1A2 LTR MaLR 1 327 0 2 1256 408 214 124 19 chr11 88078327 88078432 -33765424 - PB1D10 SINE Alu -1 116 1 2 1256 675 149 0 0 chr11 88078926 88079033 -33764823 - B2_Mm2 SINE B2 -88 107 1 2 1256 545 272 65 61 chr11 88079229 88079462 -33764394 - B4A SINE B4 -20 272 1 2 1256 454 340 54 27 chr11 88079571 88079792 -33764064 - L1ME4a LINE L1 -206 5918 5692 2 1257 576 42 0 0 chr11 88080458 88080529 -33763327 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1257 547 277 63 25 chr11 88080601 88080760 -33763096 - B4 SINE B4 -127 165 1 2 1257 903 242 96 0 chr11 88080770 88080968 -33762888 - ID_B1 SINE B4 -1 223 7 2 1257 505 213 11 0 chr11 88081249 88081343 -33762513 + PB1D10 SINE Alu 22 116 -1 2 1257 307 211 26 26 chr11 88081343 88081421 -33762435 + ID4 SINE ID 2 79 -4 2 1257 320 178 14 0 chr11 88081426 88081499 -33762357 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1257 264 227 100 57 chr11 88083560 88083630 -33760226 - ID4_ SINE ID -10 73 1 2 1257 321 186 43 0 chr11 88083995 88084065 -33759791 - HAL1-3A_ME LINE L1 -808 2050 1978 2 1257 426 235 68 10 chr11 88084082 88084185 -33759671 - B1F SINE Alu -3 146 38 2 1257 346 264 11 21 chr11 88084371 88084464 -33759392 + ORR1D1 LTR MaLR 3 94 -280 2 1257 2250 117 59 9 chr11 88084513 88084850 -33759006 - ORR1B1 LTR MaLR 0 394 41 2 1257 638 204 138 7 chr11 88084852 88084990 -33758866 - ORR1E LTR MaLR -197 162 7 2 1257 740 302 74 0 chr11 88085183 88085441 -33758415 + MER33 DNA MER1_type 41 317 -7 2 1257 1658 153 48 100 chr11 88085500 88085871 -33757985 + ORR1B1 LTR MaLR 41 392 -2 2 1257 338 294 53 54 chr11 88086486 88086694 -33757162 - MIRb SINE MIR -5 257 70 2 1257 348 110 0 62 chr11 88086699 88086796 -33757060 + (CAGAGA)n Simple_repeat Simple_repeat 4 94 0 2 1257 360 253 0 46 chr11 88087011 88087098 -33756758 - ID4_ SINE ID 0 83 1 2 1257 387 0 0 0 chr11 88087347 88087390 -33756466 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2 1257 626 261 7 7 chr11 88087430 88087569 -33756287 - RSINE1 SINE B4 -25 140 2 2 1257 414 0 0 0 chr11 88089042 88089088 -33754768 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1257 544 325 42 5 chr11 88090366 88090555 -33753301 - MIRb SINE MIR -59 209 14 2 1257 1205 101 28 6 chr11 88091159 88091338 -33752518 + B2_Mm2 SINE B2 6 188 -7 2 1257 220 381 36 0 chr11 88091377 88091396 -33752460 - ID_B1 SINE B4 -122 102 16 2 1257 283 339 0 0 chr11 88091396 88091461 -33752395 - ID4_ SINE ID -3 80 16 2 1257 381 243 97 0 chr11 88091514 88091617 -33752239 - PB1D7 SINE Alu -5 115 3 2 1257 609 69 0 0 chr11 88091649 88091736 -33752120 + (TG)n Simple_repeat Simple_repeat 1 87 0 2 1257 750 284 50 39 chr11 88091782 88092064 -33751792 - B4A SINE B4 -4 288 4 2 1257 281 280 198 25 chr11 88092177 88092298 -33751558 - MIRb SINE MIR -76 192 51 2 1257 200 230 74 37 chr11 88092666 88092773 -33751083 + MIRc SINE MIR 11 122 -146 2 1257 522 0 0 0 chr11 88092844 88092902 -33750954 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1257 703 161 0 0 chr11 88093362 88093480 -33750376 - URR1B DNA MER1_type 0 225 108 2 1257 27 29 0 0 chr11 88093685 88093719 -33750137 + AT_rich Low_complexity Low_complexity 1 34 0 2 1257 23 0 0 0 chr11 88093866 88093889 -33749967 + AT_rich Low_complexity Low_complexity 1 23 0 2 1257 358 286 162 22 chr11 88094553 88094732 -33749124 - CYRA11_Mm Unknown Y-chromosome -242 375 172 2 1257 934 143 0 0 chr11 88094593 88094733 -33749123 + URR1B DNA MER1_type 86 225 0 2 1257 1012 244 112 26 chr11 88094832 88095181 -33748675 - MTEb LTR MaLR 0 379 1 2 1257 748 228 44 12 chr11 88095355 88095515 -33748341 - B3A SINE B2 -14 184 20 2 1257 705 219 137 0 chr11 88095527 88095673 -33748183 - B3A SINE B2 -30 168 3 2 1257 230 250 0 0 chr11 88095709 88095753 -33748103 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1257 905 240 99 0 chr11 88095908 88096100 -33747756 + B3 SINE B2 1 211 -5 2 1257 785 238 63 5 chr11 88096164 88096354 -33747502 - B3 SINE B2 -15 201 1 2 1257 268 326 105 0 chr11 88096357 88096443 -33747413 - RSINE1 SINE B4 -67 98 4 2 1257 528 280 30 22 chr11 88097155 88097290 -33746566 - ID_B1 SINE B4 -5 219 84 2 1257 259 255 92 41 chr11 88097358 88097456 -33746400 + Tigger8 DNA MER2_type 432 534 -132 2 1257 352 121 17 0 chr11 88097461 88097519 -33746337 - HAL1-3A_ME LINE L1 -825 2033 1975 2 1257 717 198 3 0 chr11 88097536 88097872 -33745984 + (TG)n Simple_repeat Simple_repeat 1 337 0 2 1257 446 212 18 6 chr11 88097931 88098102 -33745754 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1257 263 277 0 0 chr11 88098119 88098184 -33745672 - B4A SINE B4 -10 282 218 2 1257 303 102 82 0 chr11 88098197 88098246 -33745610 - B1_Mur2 SINE Alu 0 149 97 2 1257 394 215 41 41 chr11 88098255 88098352 -33745504 - B4 SINE B4 -194 98 2 2 1257 514 257 145 6 chr11 88098362 88098534 -33745322 - MTEb LTR MaLR -15 364 169 2 1257 297 217 143 12 chr11 88098619 88098703 -33745153 + MER81 DNA AcHobo 1 95 -19 2 1257 504 0 0 0 chr11 88099188 88099244 -33744612 + (TGAA)n Simple_repeat Simple_repeat 4 59 0 2 1257 647 25 12 0 chr11 88099263 88099344 -33744512 + (GA)n Simple_repeat Simple_repeat 1 82 0 2 1257 244 261 46 0 chr11 88099358 88099423 -33744433 - ID_B1 SINE B4 -37 187 120 2 1257 347 265 106 12 chr11 88100105 88100302 -33743554 - L1MEg LINE L1 -4140 2102 1962 2 1257 413 270 62 9 chr11 88100683 88100795 -33743061 + B1F SINE Alu 27 144 -5 2 1257 1003 204 172 9 chr11 88100826 88101058 -33742798 + B4 SINE B4 5 274 -18 2 1257 951 57 0 0 chr11 88101115 88101237 -33742619 + (GGGAGA)n Simple_repeat Simple_repeat 6 127 0 2 1257 1094 158 58 15 chr11 88101325 88101530 -33742326 + B3 SINE B2 3 216 0 2 1257 852 166 13 52 chr11 88101582 88101735 -33742121 + B1_Mur4 SINE Alu 4 150 0 2 1257 213 196 0 0 chr11 88103161 88103207 -33740649 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 2 1257 1490 71 16 0 chr11 88103494 88103678 -33740178 + B2_Mm2 SINE B2 2 188 -7 2 1257 1280 77 0 12 chr11 88103686 88103844 -33740012 + B2_Mm2 SINE B2 2 158 -37 2 1257 423 0 0 0 chr11 88103844 88103891 -33739965 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 1257 1280 77 0 12 chr11 88103891 88103904 -33739952 + B2_Mm2 SINE B2 159 171 -24 2 1257 1199 55 14 0 chr11 88104107 88104252 -33739604 + B1_Mus2 SINE Alu 1 147 0 2 1257 210 71 0 0 chr11 88104262 88104290 -33739566 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 2 1257 559 229 38 0 chr11 88104438 88104543 -33739313 - URR1B DNA MER1_type -116 109 1 2 1257 352 280 21 0 chr11 88105970 88106063 -33737793 + MER63B DNA AcHobo 309 403 -33 2 1257 424 314 111 87 chr11 88106297 88106629 -33737227 - MLT1A0 LTR MaLR -25 340 1 2 1257 305 193 124 67 chr11 88109564 88109653 -33734203 - MIR SINE MIR -152 110 17 2 1257 390 101 0 0 chr11 88109807 88109876 -33733980 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1257 477 0 0 0 chr11 88110005 88110058 -33733798 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1257 189 324 166 28 chr11 88110101 88110282 -33733574 + L3 LINE CR1 3959 4164 -325 2 1257 473 221 61 48 chr11 88110323 88110470 -33733386 - LTR79 LTR ERVL -14 513 365 2 1257 333 0 0 0 chr11 88110540 88110577 -33733279 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1257 316 279 27 55 chr11 88110709 88110819 -33733037 - LTR79 LTR ERVL -410 117 11 2 1257 204 267 0 0 chr11 88110877 88110922 -33732934 + C-rich Low_complexity Low_complexity 1 45 0 2 1257 1724 303 61 16 chr11 88110964 88111518 -33732338 + MER77 LTR ERVL 8 586 -21 2 1257 296 214 41 41 chr11 88111554 88111627 -33732229 - MIRm SINE MIR -120 156 84 2 1257 264 277 117 0 chr11 88111916 88112010 -33731846 + MER81 DNA AcHobo 2 106 -8 2 1257 618 278 160 0 chr11 88112338 88112507 -33731349 + ID_B1 SINE B4 1 196 -28 2 1257 881 182 222 0 chr11 88112576 88112752 -33731104 - B3 SINE B2 0 216 2 2 1257 750 53 0 0 chr11 88112768 88112863 -33730993 + (TCTCC)n Simple_repeat Simple_repeat 2 96 0 3 1257 603 0 0 0 chr11 88112863 88112930 -33730926 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 3 1257 380 321 22 30 chr11 88113297 88113336 -33730520 + ID SINE ID 40 77 -147 3 1257 368 346 0 16 chr11 88113336 88113465 -33730391 + B1F SINE Alu 1 127 -22 3 1257 413 311 53 13 chr11 88113951 88114101 -33729755 + MER3 DNA MER1_type 3 158 -51 3 1257 346 263 178 0 chr11 88115320 88115438 -33728418 - MER117 DNA MER1_type -56 141 3 3 1257 261 83 0 0 chr11 88115533 88115569 -33728287 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1257 279 352 48 0 chr11 88115659 88115764 -33728092 - MIR3 SINE MIR -5 203 94 3 1257 231 88 69 17 chr11 88115893 88115951 -33727905 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1257 1356 255 54 51 chr11 88115956 88116510 -33727346 - Lx6 LINE L1 -24 7436 6503 3 1257 999 203 14 41 chr11 88116568 88116789 -33727067 + B3 SINE B2 2 216 0 3 1257 276 296 78 61 chr11 88116828 88116943 -33726913 + PB1D7 SINE Alu 1 117 -3 3 1257 477 0 0 0 chr11 88117121 88117174 -33726682 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1257 487 224 50 36 chr11 88117176 88117315 -33726541 - B4A SINE B4 -20 272 132 3 1257 187 412 0 0 chr11 88117374 88117471 -33726385 + MIRc SINE MIR 129 225 -43 3 1257 688 298 75 75 chr11 88118528 88119084 -33724772 + L1MB5 LINE L1 5585 6140 -34 3 1257 442 292 10 0 chr11 88119087 88119183 -33724673 + PB1 SINE Alu 2 98 -29 3 1257 1140 102 0 0 chr11 88120219 88120366 -33723490 + B1_Mus2 SINE Alu 1 147 0 3 1257 238 277 31 0 chr11 88120403 88120468 -33723388 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 3 1257 232 178 114 76 chr11 88123053 88123132 -33720724 - MTE-int LTR MaLR -752 828 747 3 1257 555 331 134 22 chr11 88123349 88123985 -33719871 + L1MCa LINE L1 13 719 -5789 3 1257 199 311 144 0 chr11 88124626 88124716 -33719140 + MIR SINE MIR 8 110 -152 3 1257 394 244 62 85 chr11 88126274 88126404 -33717452 + PB1 SINE Alu 1 127 0 3 1257 770 272 93 71 chr11 88126513 88126837 -33717019 - MLT1C LTR MaLR -130 337 7 3 1257 230 234 0 0 chr11 88127571 88127618 -33716238 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1257 363 143 68 41 chr11 88127618 88127691 -33716165 + HAL1-3A_ME LINE L1 1975 2049 -809 3 1257 929 133 7 0 chr11 88128535 88128670 -33715186 - B1_Mus1 SINE Alu -12 136 1 3 1257 215 173 19 0 chr11 88129550 88129602 -33714254 + CT-rich Low_complexity Low_complexity 1 53 0 3 1257 377 284 9 18 chr11 88129602 88129713 -33714143 - PB1D7 SINE Alu -6 114 5 3 1257 381 292 78 102 chr11 88129724 88129968 -33713888 - MLT1L LTR MaLR -320 290 53 3 1257 253 149 0 7 chr11 88129968 88130028 -33713828 + MIRc SINE MIR 110 168 -94 3 1257 363 162 118 26 chr11 88130136 88130212 -33713644 + HAL1-3A_ME LINE L1 1936 2018 -840 3 1257 714 174 0 0 chr11 88130223 88130361 -33713495 + (CA)n Simple_repeat Simple_repeat 2 139 0 3 1257 775 259 49 15 chr11 88130371 88130575 -33713281 - L3 LINE CR1 -744 3745 3535 3 1257 1034 211 47 19 chr11 88132273 88132485 -33711371 + ID_B1 SINE B4 1 218 -6 3 1257 182 365 11 23 chr11 88132719 88132806 -33711050 - MIRm SINE MIR -95 181 96 3 1257 183 256 26 0 chr11 88132846 88132885 -33710971 + L2b LINE L2 3116 3155 -220 3 1257 540 303 22 71 chr11 88133540 88133764 -33710092 - B4A SINE B4 0 292 80 3 1257 210 310 0 0 chr11 88134272 88134330 -33709526 + CT-rich Low_complexity Low_complexity 3 60 0 3 1257 852 243 5 11 chr11 88134343 88134534 -33709322 - ID_B1 SINE B4 -30 194 5 3 1257 332 299 145 30 chr11 88135011 88135319 -33708537 + L1MC5 LINE L1 6694 7009 -1033 3 1257 1450 49 16 27 chr11 88135319 88135507 -33708349 - B2_Mm2 SINE B2 -9 186 1 3 1257 332 298 138 35 chr11 88135507 88135518 -33708338 + L1MC5 LINE L1 6963 6973 -988 3 1257 848 232 31 16 chr11 88135589 88135782 -33708074 + B3A SINE B2 1 196 -2 3 1257 396 0 0 0 chr11 88135797 88135841 -33708015 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1257 270 0 0 0 chr11 88136068 88136098 -33707758 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1257 716 287 86 61 chr11 88136642 88137132 -33706724 + L1MC4 LINE L1 6512 7013 -1029 3 1257 886 268 4 22 chr11 88137146 88137371 -33706485 - ID_B1 SINE B4 -2 222 2 3 1257 329 321 46 171 chr11 88137381 88137509 -33706347 + L1MC4 LINE L1 7097 7234 -808 3 1257 1939 128 176 0 chr11 88137509 88137821 -33706035 - ORR1B2 LTR MaLR 0 367 1 3 1257 329 321 46 171 chr11 88137821 88137841 -33706015 + L1MC4 LINE L1 7235 7248 -794 3 1257 413 250 124 36 chr11 88137841 88137978 -33705878 + B1F1 SINE Alu 1 149 0 3 1257 329 321 46 171 chr11 88137978 88138155 -33705701 + L1MC4 LINE L1 7249 7382 -660 3 1257 422 266 21 0 chr11 88138167 88138261 -33705595 + PB1D10 SINE Alu 1 96 -21 3 1257 983 106 19 0 chr11 88138294 88138454 -33705402 + L1_Mus3 LINE L1 6471 6633 -5 3 1257 325 303 88 105 chr11 88138538 88138778 -33705078 + L1MC4 LINE L1 7524 7763 -279 3 1257 1025 227 54 0 chr11 88138778 88138981 -33704875 - B3 SINE B2 -1 215 2 3 1257 325 303 88 105 chr11 88138981 88139035 -33704821 + L1MC4 LINE L1 7764 7813 -229 3 1257 247 265 125 29 chr11 88139046 88139182 -33704674 + RLTR21 LTR ERVK 1085 1233 -339 3 1257 848 180 65 33 chr11 88139312 88139496 -33704360 - B3 SINE B2 -1 215 26 3 1257 956 287 48 35 chr11 88139525 88139980 -33703876 + L1MB8 LINE L1 5714 6174 -4 3 1257 1327 155 14 27 chr11 88141648 88141867 -33701989 - B3 SINE B2 0 216 1 3 1257 1195 89 6 6 chr11 88141885 88142065 -33701791 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1257 1251 47 0 0 chr11 88142089 88142237 -33701619 - B1_Mus1 SINE Alu 0 148 1 3 1257 268 275 50 0 chr11 88143072 88143152 -33700704 - MER20B DNA MER1_type -6 777 694 3 1257 439 231 77 0 chr11 88143224 88143315 -33700541 + B3A SINE B2 1 98 -100 3 1257 280 211 11 126 chr11 88143321 88143408 -33700448 - ID4 SINE ID -2 81 5 3 1257 747 264 90 66 chr11 88143414 88143686 -33700170 - ORR1E LTR MaLR -75 304 3 3 1257 242 303 21 53 chr11 88143830 88143924 -33699932 - MTEa LTR MaLR 0 379 289 3 1257 1049 265 74 45 chr11 88144771 88145083 -33698773 - MLT1A0 LTR MaLR -33 332 12 3 1257 450 0 0 0 chr11 88145163 88145213 -33698643 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1257 590 257 66 16 chr11 88145648 88145830 -33698026 + Tigger14a DNA MER2_type 86 276 -48 3 1257 393 22 0 0 chr11 88146655 88146701 -33697155 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1257 1432 66 11 11 chr11 88146712 88146897 -33696959 + B2_Mm2 SINE B2 2 186 -9 3 1257 562 207 140 51 chr11 88146905 88147083 -33696773 - B3A SINE B2 0 198 5 3 1257 1234 48 7 0 chr11 88147122 88147268 -33696588 + B1_Mus2 SINE Alu 1 147 0 3 1257 207 0 0 0 chr11 88147293 88147316 -33696540 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1257 779 150 79 0 chr11 88147316 88147443 -33696413 - B1_Mur4 SINE Alu -13 137 1 3 1257 1101 101 70 12 chr11 88147464 88147635 -33696221 - B2_Mm2 SINE B2 -14 181 1 3 1257 399 113 0 0 chr11 88147768 88147830 -33696026 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1257 3829 183 30 44 chr11 88147940 88148713 -33695143 - RLTR40 LTR ERVK -54 763 2 3 1257 481 250 0 46 chr11 88148719 88148828 -33695028 - RSINE1 SINE B4 -61 104 1 3 1257 798 246 65 34 chr11 88149673 88149875 -33693981 - ID_B1 SINE B4 -46 246 32 3 1257 1061 110 0 27 chr11 88150088 88150238 -33693618 + B1_Mur4 SINE Alu 5 150 0 3 1257 1020 61 0 0 chr11 88150338 88150470 -33693386 + (TTCC)n Simple_repeat Simple_repeat 1 132 0 3 1257 1177 107 0 0 chr11 88150470 88150629 -33693227 - B2_Mm2 SINE B2 -34 161 3 3 1257 1215 41 0 14 chr11 88151204 88151352 -33692504 - B1_Mus2 SINE Alu -1 146 1 3 1257 1873 175 76 5 chr11 88151809 88152176 -33691680 + ORR1B1 LTR MaLR 2 394 0 3 1257 294 73 0 0 chr11 88153114 88153155 -33690701 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1257 203 179 54 0 chr11 88153592 88153648 -33690208 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 3 1257 183 184 0 0 chr11 88153651 88153689 -33690167 + A-rich Low_complexity Low_complexity 1 38 0 3 1257 24 0 0 0 chr11 88155224 88155248 -33688608 + AT_rich Low_complexity Low_complexity 1 24 0 3 1257 24 85 0 0 chr11 88156273 88156332 -33687524 + AT_rich Low_complexity Low_complexity 1 59 0 3 1257 26 50 0 0 chr11 88156403 88156443 -33687413 + AT_rich Low_complexity Low_complexity 1 40 0 3 1257 22 0 0 0 chr11 88156558 88156580 -33687276 + AT_rich Low_complexity Low_complexity 1 22 0 3 1257 202 128 0 25 chr11 88156597 88156637 -33687219 + A-rich Low_complexity Low_complexity 3 41 0 3 1257 198 143 0 0 chr11 88157746 88157781 -33686075 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1257 1065 140 0 0 chr11 88158539 88158689 -33685167 + B1_Mur4 SINE Alu 1 150 0 3 1257 243 146 0 0 chr11 88161349 88161390 -33682466 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1257 196 30 29 29 chr11 88161626 88161660 -33682196 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1257 204 40 0 0 chr11 88162699 88162724 -33681132 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1257 195 42 0 0 chr11 88162807 88162831 -33681025 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1257 272 196 0 97 chr11 88163860 88163922 -33679934 + B4A SINE B4 82 137 -155 3 1257 425 200 110 0 chr11 88163879 88163979 -33679877 + PB1D9 SINE Alu 10 120 0 3 1257 789 125 83 0 chr11 88163984 88164104 -33679752 + B3 SINE B2 1 130 -86 3 1257 218 125 25 0 chr11 88164116 88164156 -33679700 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 3 1257 207 0 0 0 chr11 88166083 88166106 -33677750 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1257 363 258 146 38 chr11 88166310 88166495 -33677361 + MIRc SINE MIR 2 206 -62 4 1257 215 326 23 23 chr11 88168901 88168989 -33674867 - MER5B DNA MER1_type -80 98 11 4 1257 1167 212 58 7 chr11 88169064 88169340 -33674516 - B4A SINE B4 -2 290 1 4 1257 225 306 158 69 chr11 88171136 88171382 -33672474 + MIRb SINE MIR 1 268 0 4 1257 629 294 118 5 chr11 88172709 88172904 -33670952 - ID_B1 SINE B4 -7 217 1 4 1257 205 98 49 0 chr11 88174711 88174752 -33669104 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1257 750 252 34 68 chr11 88174762 88174996 -33668860 - B4A SINE B4 -65 227 2 4 1257 220 300 0 0 chr11 88176772 88176832 -33667024 + GA-rich Low_complexity Low_complexity 1 60 0 4 1257 210 219 0 0 chr11 88178812 88178853 -33665003 + G-rich Low_complexity Low_complexity 1 41 0 4 1257 396 0 0 0 chr11 88182243 88182287 -33661569 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 1257 238 263 21 21 chr11 88182716 88182813 -33661043 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 1257 185 238 94 16 chr11 88182893 88182957 -33660899 + MIR SINE MIR 50 118 -144 4 1257 225 0 0 0 chr11 88183889 88183914 -33659942 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 1257 1086 95 0 0 chr11 88183916 88184064 -33659792 - B1_Mus1 SINE Alu 0 148 1 4 1257 209 271 21 0 chr11 88184550 88184598 -33659258 + polypyrimidine Low_complexity Low_complexity 3 51 0 4 1257 557 75 0 0 chr11 88184599 88184693 -33659163 - L1Md_F3 LINE L1 -14 6570 6477 4 1257 1419 51 0 0 chr11 88184693 88184870 -33658986 + L1Md_F3 LINE L1 6157 6333 -251 4 1257 1032 74 0 0 chr11 88184870 88185005 -33658851 - B1_Mus2 SINE Alu -12 135 1 4 1257 986 89 14 0 chr11 88185430 88185576 -33658280 + (GAAAA)n Simple_repeat Simple_repeat 2 149 0 4 1257 267 136 0 83 chr11 88185866 88185938 -33657918 + C-rich Low_complexity Low_complexity 3 68 0 4 1257 276 270 0 0 chr11 88187102 88187165 -33656691 - ID2 SINE ID -19 64 2 4 1257 306 300 108 9 chr11 88187165 88187276 -33656580 - PB1 SINE Alu -4 123 2 4 1257 277 286 67 67 chr11 88187445 88187535 -33656321 - L2a LINE L2 -15 3411 3322 4 1257 234 353 49 32 chr11 88188294 88188417 -33655439 + MamRep38 DNA hAT 160 284 -11 4 1257 1195 233 20 88 chr11 88188640 88188946 -33654910 + B4 SINE B4 8 292 0 4 1257 285 230 0 0 chr11 88188947 88189021 -33654835 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1257 238 349 36 27 chr11 88189032 88189144 -33654712 + MIR SINE MIR 100 212 -50 4 1257 188 274 59 0 chr11 88189667 88189718 -33654138 + L2b LINE L2 3279 3332 -43 4 1257 970 200 15 10 chr11 88190209 88190406 -33653450 - B3A SINE B2 0 198 1 4 1257 482 187 39 9 chr11 88190450 88190572 -33653284 + MLT1A0 LTR MaLR 35 167 -207 4 1257 1260 85 11 0 chr11 88190572 88190748 -33653108 + B2_Mm1t SINE B2 2 179 -14 4 1257 288 132 0 36 chr11 88190790 88190845 -33653011 + B2_Mm2 SINE B2 48 100 -95 4 1257 35 0 0 0 chr11 88190870 88190905 -33652951 + AT_rich Low_complexity Low_complexity 1 35 0 4 1257 286 342 26 40 chr11 88190912 88191064 -33652792 + RSINE1 SINE B4 1 150 -15 4 1257 374 274 7 75 chr11 88191119 88191265 -33652591 + MLT1A0 LTR MaLR 142 277 -88 4 1257 243 0 0 0 chr11 88194924 88194951 -33648905 + (G)n Simple_repeat Simple_repeat 1 27 0 4 1257 381 315 42 24 chr11 88197918 88198084 -33645772 + MER3 DNA MER1_type 1 169 -40 4 1257 190 231 0 0 chr11 88201321 88201360 -33642496 + MIR SINE MIR 30 68 -140 4 1257 704 317 43 60 chr11 88201382 88201519 -33642337 + MLT1A0 LTR MaLR 3 134 -231 4 1257 2166 138 37 0 chr11 88201519 88201873 -33641983 + ORR1B2 LTR MaLR 1 367 0 4 1257 704 317 43 60 chr11 88201873 88202104 -33641752 + MLT1A0 LTR MaLR 135 365 0 4 1257 235 315 25 93 chr11 88203851 88204012 -33639844 - MER3 DNA MER1_type -45 164 15 4 1257 495 0 0 0 chr11 88204243 88204298 -33639558 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 4 1257 309 283 137 32 chr11 88205054 88205178 -33638678 + L2a LINE L2 3290 3426 0 4 1257 339 242 81 40 chr11 88205254 88205353 -33638503 - PB1D10 SINE Alu -14 103 1 4 1257 634 261 7 0 chr11 88205378 88205531 -33638325 - ID_B1 SINE B4 0 224 74 4 1257 240 195 0 0 chr11 88205888 88205929 -33637927 + B4A SINE B4 32 72 -220 4 1257 297 266 53 11 chr11 88205942 88206037 -33637819 + B4 SINE B4 112 210 -82 4 1257 234 303 0 15 chr11 88206043 88206110 -33637746 + (CATG)n Simple_repeat Simple_repeat 3 68 0 4 1257 238 372 43 0 chr11 88206161 88206255 -33637601 - Tigger5 DNA MER2_type -17 2389 2292 4 1257 524 286 45 28 chr11 88206326 88206502 -33637354 - Tigger5 DNA MER2_type -2226 180 2 4 1257 618 220 85 51 chr11 88206518 88206695 -33637161 - ID_B1 SINE B4 -40 184 2 4 1257 376 297 135 62 chr11 88206695 88206903 -33636953 - L1M5 LINE L1 -1371 4775 4553 4 1257 180 0 0 0 chr11 88208516 88208536 -33635320 + (CAG)n Simple_repeat Simple_repeat 1 20 0 4 1257 496 253 46 33 chr11 88209007 88209158 -33634698 + RSINE1 SINE B4 3 155 -10 4 1257 824 115 0 0 chr11 88209643 88209765 -33634091 + B1_Mur4 SINE Alu 19 140 -10 4 1257 421 288 0 0 chr11 88209807 88209918 -33633938 + PB1D10 SINE Alu 1 111 -6 4 1257 768 22 0 0 chr11 88209919 88210009 -33633847 + (CAGAA)n Simple_repeat Simple_repeat 5 94 0 4 1257 192 40 0 0 chr11 88210167 88210192 -33633664 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1257 438 266 111 50 chr11 88210310 88210571 -33633285 + B4A SINE B4 1 277 -15 4 1257 282 232 103 21 chr11 88210677 88210774 -33633082 - ORR1E LTR MaLR -9 370 266 4 1257 319 258 43 33 chr11 88210858 88210950 -33632906 + B1_Mur3 SINE Alu 1 93 -56 4 1257 243 0 0 0 chr11 88210962 88210989 -33632867 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1257 396 0 0 0 chr11 88210990 88211034 -33632822 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1257 532 224 112 0 chr11 88211208 88211342 -33632514 - ORR1E LTR MaLR -206 153 5 4 1258 471 219 33 50 chr11 88211521 88211641 -33632215 + RSINE1 SINE B4 4 121 -44 4 1258 240 35 0 0 chr11 88211670 88211699 -33632157 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1258 818 198 119 10 chr11 88211716 88211910 -33631946 + B3 SINE B2 2 216 0 4 1258 27 62 0 0 chr11 88212109 88212157 -33631699 + AT_rich Low_complexity Low_complexity 1 48 0 4 1258 1195 35 0 0 chr11 88212197 88212340 -33631516 + B1_Mus1 SINE Alu 1 143 -5 4 1258 225 0 0 0 chr11 88212344 88212369 -33631487 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1258 202 156 22 22 chr11 88213427 88213473 -33630383 + C-rich Low_complexity Low_complexity 2 47 0 4 1258 1064 91 0 0 chr11 88213473 88213616 -33630240 - B1_Mur4 SINE Alu -5 145 3 4 1258 263 311 176 0 chr11 88213833 88213981 -33629875 - MLT1F LTR MaLR -25 523 350 4 1258 333 200 75 0 chr11 88214959 88214975 -33628881 - ID_B1 SINE B4 -127 97 12 4 1258 372 156 16 0 chr11 88214975 88215039 -33628817 - ID4 SINE ID -7 76 12 4 1258 318 279 12 12 chr11 88215522 88215602 -33628254 - PB1D10 SINE Alu -26 91 12 4 1258 351 0 0 0 chr11 88216858 88216897 -33626959 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1258 207 0 0 0 chr11 88217090 88217113 -33626743 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 4 1258 409 237 72 0 chr11 88219255 88219352 -33624504 + B3A SINE B2 47 150 -48 4 1258 1099 83 0 0 chr11 88219379 88219523 -33624333 - B1_Mus2 SINE Alu 0 147 4 4 1258 207 0 0 0 chr11 88219540 88219563 -33624293 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1258 232 288 86 43 chr11 88219795 88219911 -33623945 - MIR SINE MIR -78 184 64 4 1258 1025 198 5 20 chr11 88220234 88220435 -33623421 + MER58A DNA MER1_type 10 207 -17 4 1258 558 43 0 0 chr11 88220907 88220976 -33622880 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1258 657 259 27 0 chr11 88221405 88221552 -33622304 + RSINE1 SINE B4 15 165 0 4 1258 868 68 17 0 chr11 88222460 88222577 -33621279 - B1_Mur4 SINE Alu 0 150 32 4 1258 458 314 50 55 chr11 88222620 88222762 -33621094 + MIR SINE MIR 8 154 -108 4 1258 1384 125 0 0 chr11 88222762 88222954 -33620902 - B2_Mm2 SINE B2 -3 192 1 4 1258 458 314 50 55 chr11 88222954 88223013 -33620843 + MIR SINE MIR 155 208 -54 4 1258 224 122 24 0 chr11 88223240 88223281 -33620575 + (TATG)n Simple_repeat Simple_repeat 2 43 0 4 1258 735 159 33 80 chr11 88223282 88223334 -33620522 - B1_Mus2 SINE Alu -3 144 103 4 1258 1199 111 44 11 chr11 88223334 88223517 -33620339 - B2_Mm2 SINE B2 -6 189 1 4 1258 735 159 33 80 chr11 88223517 88223614 -33620242 - B1_Mus2 SINE Alu -45 102 2 4 1258 192 234 21 0 chr11 88223769 88223816 -33620040 + MIR SINE MIR 37 84 -124 4 1258 978 110 0 0 chr11 88224596 88224742 -33619114 + (TTTC)n Simple_repeat Simple_repeat 1 146 0 4 1258 1149 44 0 7 chr11 88224743 88224879 -33618977 - B1_Mus1 SINE Alu -13 135 1 4 1258 1163 65 6 0 chr11 88225847 88226017 -33617839 + (TC)n Simple_repeat Simple_repeat 1 171 0 4 1258 285 294 135 23 chr11 88226255 88226328 -33617528 + B4 SINE B4 19 187 -105 4 1258 503 191 50 50 chr11 88226328 88226427 -33617429 + PB1D9 SINE Alu 9 107 -13 4 1258 285 294 135 23 chr11 88226427 88226443 -33617413 + B4 SINE B4 188 229 -63 4 1258 360 43 0 0 chr11 88226443 88226489 -33617367 + (GGGGA)n Simple_repeat Simple_repeat 3 48 0 4 1258 865 281 31 21 chr11 88226901 88227188 -33616668 - B4 SINE B4 0 292 3 4 1258 616 204 0 0 chr11 88227198 88227301 -33616555 - B1_Mur2 SINE Alu -1 148 46 4 1258 576 0 0 0 chr11 88228550 88228614 -33615242 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1258 281 47 23 0 chr11 88230102 88230145 -33613711 + (CCAA)n Simple_repeat Simple_repeat 1 44 0 4 1258 290 286 11 11 chr11 88230191 88230283 -33613573 + MLT1B LTR MaLR 299 390 0 4 1258 239 89 22 0 chr11 88230809 88230820 -33613036 + (TA)n Simple_repeat Simple_repeat 1 11 0 4 1258 297 0 0 0 chr11 88230820 88230853 -33613003 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1258 239 89 22 0 chr11 88230853 88230886 -33612970 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1258 823 189 121 35 chr11 88230896 88231094 -33612762 + B3 SINE B2 1 215 -1 5 1258 252 122 0 0 chr11 88231546 88231587 -33612269 + (TATG)n Simple_repeat Simple_repeat 4 44 0 5 1258 536 254 87 14 chr11 88231592 88231800 -33612056 - L1MB3 LINE L1 -10 6173 5951 5 1258 477 153 387 0 chr11 88231823 88231947 -33611909 - URR1A DNA MER1_type -50 176 5 5 1258 386 278 43 79 chr11 88232262 88232426 -33611430 + B4A SINE B4 53 210 -82 5 1258 207 139 0 0 chr11 88232432 88232468 -33611388 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 5 1258 198 252 222 0 chr11 88236176 88236275 -33607581 - MER5B DNA MER1_type -38 140 20 5 1258 180 77 0 0 chr11 88236414 88236440 -33607416 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1258 812 271 84 22 chr11 88236459 88236734 -33607122 - B4A SINE B4 0 292 1 5 1258 357 289 183 48 chr11 88236777 88237006 -33606850 - B4A SINE B4 -3 289 30 5 1258 340 239 57 43 chr11 88237114 88237254 -33606602 + B1F1 SINE Alu 3 144 -5 5 1258 180 77 0 0 chr11 88237277 88237303 -33606553 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 5 1258 792 194 0 7 chr11 88238788 88238923 -33604933 + B1_Mm SINE Alu 2 135 -12 5 1258 391 237 75 42 chr11 88239524 88239660 -33604196 + MER5A1 DNA MER1_type 63 189 0 5 1258 213 301 45 80 chr11 88239677 88239789 -33604067 - MER5B DNA MER1_type -7 171 64 5 1258 382 245 92 28 chr11 88239885 88239994 -33603862 - PB1 SINE Alu -3 124 9 5 1258 503 258 65 50 chr11 88240097 88240236 -33603620 + RSINE1 SINE B4 25 165 0 5 1258 1951 247 78 75 chr11 88240605 88241374 -33602482 + Charlie7 DNA MER1_type 1805 2575 -37 5 1258 802 197 7 0 chr11 88241368 88241505 -33602351 - B3 SINE B2 0 216 79 5 1258 578 304 51 20 chr11 88242134 88242329 -33601527 + MIRb SINE MIR 3 203 -65 5 1258 767 247 5 93 chr11 88242437 88242651 -33601205 + ID_B1 SINE B4 4 198 -26 5 1258 835 195 125 10 chr11 88243309 88243501 -33600355 - B3 SINE B2 -1 215 2 5 1258 290 363 91 60 chr11 88243690 88244009 -33599847 + ORR1E LTR MaLR 3 331 -28 5 1258 243 0 0 0 chr11 88245950 88245977 -33597879 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1258 228 300 0 32 chr11 88246204 88246230 -33597626 + polypyrimidine Low_complexity Low_complexity 67 92 0 5 1258 1199 54 0 0 chr11 88246230 88246377 -33597479 - B1_Mus1 SINE Alu 0 148 2 5 1258 228 300 0 32 chr11 88246377 88246443 -33597413 + polypyrimidine Low_complexity Low_complexity 3 66 0 5 1258 246 32 0 0 chr11 88246745 88246776 -33597080 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1258 1209 29 0 0 chr11 88246776 88246912 -33596944 - B1_Mm SINE Alu -11 136 1 5 1258 1227 105 44 0 chr11 88247266 88247447 -33596409 + B2_Mm2 SINE B2 2 190 -5 5 1258 1413 211 181 9 chr11 88248466 88248701 -33595155 - MTD LTR MaLR -10 409 116 5 1258 237 65 0 0 chr11 88248701 88248732 -33595124 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1258 1413 211 181 9 chr11 88248732 88248845 -33595011 - MTD LTR MaLR -304 115 2 5 1258 361 304 41 61 chr11 88250144 88250340 -33593516 - MIRb SINE MIR -57 211 20 5 1258 665 171 26 0 chr11 88250475 88250509 -33593347 + URR1B DNA MER1_type 1 37 -188 5 1258 273 57 0 0 chr11 88250509 88250544 -33593312 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1258 665 171 26 0 chr11 88250544 88250626 -33593230 + URR1B DNA MER1_type 38 119 -106 5 1258 702 56 0 0 chr11 88250648 88250737 -33593119 + B1_Mm SINE Alu 48 136 -11 5 1258 213 0 81 0 chr11 88250737 88250774 -33593082 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1258 537 168 17 42 chr11 88250779 88250805 -33593051 + URR1B DNA MER1_type 111 137 -88 5 1258 1312 95 11 6 chr11 88250805 88250985 -33592871 - B2_Mm2 SINE B2 -14 181 1 5 1258 537 168 17 42 chr11 88250985 88251076 -33592780 + URR1B DNA MER1_type 138 225 0 5 1258 243 230 193 11 chr11 88251181 88251269 -33592587 + L2a LINE L2 3323 3426 0 5 1258 215 235 98 76 chr11 88253835 88253927 -33589929 - MER5A DNA MER1_type -62 116 23 5 1258 359 244 50 36 chr11 88253929 88254069 -33589787 - L1ME4a LINE L1 -207 5917 5776 5 1258 707 296 137 12 chr11 88254629 88254885 -33588971 - B4A SINE B4 -4 288 1 5 1258 1242 106 26 26 chr11 88254913 88255106 -33588750 + B2_Mm1t SINE B2 1 193 0 5 1258 180 246 17 50 chr11 88256535 88256595 -33587261 - L3 LINE CR1 -4395 94 37 5 1258 333 0 0 0 chr11 88258013 88258050 -33585806 + (CTG)n Simple_repeat Simple_repeat 1 37 0 5 1258 701 23 0 11 chr11 88258050 88258138 -33585718 + (TTC)n Simple_repeat Simple_repeat 2 88 0 5 1258 202 247 6 128 chr11 88259484 88259565 -33584291 + MIRb SINE MIR 157 233 -35 5 1258 2232 172 61 24 chr11 88259844 88260338 -33583518 + Lx6 LINE L1 5598 6109 -1351 5 1258 1196 63 0 0 chr11 88260640 88260782 -33583074 + B1_Mus1 SINE Alu 2 143 -5 5 1258 233 265 0 0 chr11 88261541 88261590 -33582266 + C-rich Low_complexity Low_complexity 3 51 0 5 1258 1623 293 117 23 chr11 88261615 88262341 -33581515 + Lx8 LINE L1 6488 7281 -192 5 1258 369 0 0 0 chr11 88262352 88262393 -33581463 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1258 219 242 0 0 chr11 88262994 88263056 -33580800 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 5 1258 311 274 78 10 chr11 88263104 88263207 -33580649 - MIR SINE MIR -50 212 103 5 1258 1307 95 26 11 chr11 88263220 88263411 -33580445 + B2_Mm2 SINE B2 2 195 0 5 1258 306 0 0 0 chr11 88263421 88263455 -33580401 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1258 201 74 0 0 chr11 88263935 88263962 -33579894 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 5 1258 264 315 43 69 chr11 88266031 88266147 -33577709 + B1F SINE Alu 1 113 -36 5 1258 984 263 67 39 chr11 88266141 88266551 -33577305 - RLTR11A2 LTR ERVK -27 414 1 5 1258 260 350 62 0 chr11 88267598 88267695 -33576161 - L2c LINE L2 0 3387 3285 5 1258 190 160 20 20 chr11 88269392 88269443 -33574413 + GA-rich Low_complexity Low_complexity 1 51 0 5 1258 213 151 0 0 chr11 88269461 88269514 -33574342 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1258 1285 34 0 0 chr11 88269793 88269940 -33573916 + B1_Mus2 SINE Alu 1 147 0 5 1258 392 307 10 29 chr11 88271753 88271857 -33571999 + PB1D10 SINE Alu 1 102 -15 5 1258 233 240 40 0 chr11 88271927 88271977 -33571879 + MT2B2 LTR ERVL 190 241 -343 5 1258 288 235 0 68 chr11 88271935 88272008 -33571848 + PB1D10 SINE Alu 43 110 -7 5 1258 304 281 0 0 chr11 88272025 88272089 -33571767 + ID4 SINE ID 10 73 -10 5 1258 214 305 30 59 chr11 88273180 88273281 -33570575 + MIRm SINE MIR 67 164 -112 5 1258 195 42 0 0 chr11 88274320 88274344 -33569512 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1258 345 250 0 29 chr11 88275488 88275558 -33568298 - ID4_ SINE ID -14 69 2 5 1258 633 239 0 0 chr11 88277163 88277343 -33566513 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 5 1258 216 135 0 0 chr11 88278268 88278305 -33565551 + (CCA)n Simple_repeat Simple_repeat 1 37 0 5 1258 304 232 58 67 chr11 88278493 88278613 -33565243 + PB1D7 SINE Alu 1 119 -1 5 1258 533 254 0 8 chr11 88278618 88278737 -33565119 + PB1D9 SINE Alu 2 119 -1 5 1258 1068 275 14 36 chr11 88278751 88279030 -33564826 + B4 SINE B4 2 274 -18 5 1258 270 0 0 0 chr11 88279037 88279067 -33564789 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1258 576 42 0 0 chr11 88279100 88279171 -33564685 + (TATG)n Simple_repeat Simple_repeat 2 72 0 5 1258 513 0 0 0 chr11 88280002 88280059 -33563797 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1258 250 354 9 26 chr11 88280075 88280191 -33563665 - PB1 SINE Alu -13 114 1 5 1258 743 282 0 60 chr11 88280191 88280286 -33563570 - B4A SINE B4 -207 85 2 5 1258 734 243 33 0 chr11 88280320 88280472 -33563384 - ID_B1 SINE B4 -67 157 1 5 1258 1384 75 16 21 chr11 88280589 88280780 -33563076 + B2_Mm2 SINE B2 2 191 -4 5 1258 40 0 0 0 chr11 88280798 88280838 -33563018 + AT_rich Low_complexity Low_complexity 1 40 0 5 1258 35 0 0 0 chr11 88282512 88282547 -33561309 + AT_rich Low_complexity Low_complexity 1 35 0 5 1258 706 284 52 47 chr11 88282587 88282798 -33561058 - ID_B1 SINE B4 -6 218 7 5 1258 495 335 89 12 chr11 88283099 88283347 -33560509 - MLT1C LTR MaLR -200 267 1 5 1258 588 281 125 0 chr11 88283460 88283620 -33560236 + B3A SINE B2 1 180 -18 5 1258 229 312 10 61 chr11 88283736 88283835 -33560021 - MIRb SINE MIR -89 179 86 5 1258 546 67 0 0 chr11 88284039 88284114 -33559742 + (GGA)n Simple_repeat Simple_repeat 1 75 0 5 1258 222 292 126 1 chr11 88284876 88284993 -33558863 - MIRb SINE MIR -53 209 78 5 1258 183 80 0 0 chr11 88286108 88286133 -33557723 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1258 478 250 0 43 chr11 88287183 88287300 -33556556 + RSINE1 SINE B4 4 115 -50 5 1258 311 143 32 0 chr11 88287608 88287671 -33556185 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 5 1258 600 186 340 0 chr11 88287686 88287842 -33556014 - B3 SINE B2 -7 209 1 5 1258 185 0 40 0 chr11 88288126 88288151 -33555705 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 5 1258 276 318 98 74 chr11 88289889 88290052 -33553804 + LTR16A LTR ERVL 4 170 -281 5 1258 278 253 62 52 chr11 88290898 88290994 -33552862 + B4A SINE B4 196 292 0 5 1258 243 157 0 0 chr11 88291011 88291062 -33552794 + GA-rich Low_complexity Low_complexity 2 52 0 5 1258 788 150 23 0 chr11 88291457 88291590 -33552266 + MTC LTR MaLR 13 148 -273 5 1258 540 202 110 0 chr11 88291629 88291738 -33552118 + MTC LTR MaLR 298 418 -1 5 1258 613 258 58 0 chr11 88291942 88292097 -33551759 - B3A SINE B2 -33 165 2 6 1258 228 182 0 0 chr11 88292964 88293008 -33550848 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1258 716 216 73 87 chr11 88294083 88294301 -33549555 - B3A SINE B2 0 216 2 6 1258 686 239 143 57 chr11 88294305 88294584 -33549272 + MLT1B LTR MaLR 88 390 0 6 1258 21 36 0 0 chr11 88295797 88295825 -33548031 + AT_rich Low_complexity Low_complexity 1 28 0 6 1258 452 283 207 44 chr11 88297658 88297909 -33545947 + MLT1H LTR MaLR 69 360 -189 6 1258 25 31 0 0 chr11 88300023 88300055 -33543801 + AT_rich Low_complexity Low_complexity 1 32 0 6 1258 1156 82 0 0 chr11 88300055 88300202 -33543654 - B1_Mus1 SINE Alu 0 148 2 6 1258 713 270 47 33 chr11 88300212 88300423 -33543433 - ID_B1 SINE B4 -8 216 3 6 1258 229 307 0 11 chr11 88300896 88300985 -33542871 - L1MB2 LINE L1 0 6171 6084 6 1258 337 338 65 22 chr11 88301343 88301515 -33542341 - MIRc SINE MIR -79 189 3 6 1258 450 0 0 0 chr11 88302408 88302458 -33541398 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1258 243 0 0 0 chr11 88302466 88302493 -33541363 + (CATG)n Simple_repeat Simple_repeat 3 29 0 6 1258 335 218 133 61 chr11 88304679 88304860 -33538996 + L1MD1 LINE L1 5778 5971 -271 6 1258 252 184 0 0 chr11 88305064 88305113 -33538743 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1258 374 85 0 17 chr11 88306710 88306770 -33537086 + (TATG)n Simple_repeat Simple_repeat 4 62 0 6 1258 949 246 6 109 chr11 88306818 88307138 -33536718 - B4A SINE B4 -1 291 5 6 1258 1009 113 0 39 chr11 88308614 88308770 -33535086 + B2_Mm2 SINE B2 1 150 -45 6 1258 676 279 37 5 chr11 88308852 88309043 -33534813 + ID_B1 SINE B4 27 223 -1 6 1258 379 211 0 27 chr11 88309079 88309152 -33534704 + PB1D7 SINE Alu 49 119 -1 6 1258 735 69 50 0 chr11 88309767 88309868 -33533988 + B1_Mus2 SINE Alu 42 147 0 6 1258 377 296 121 91 chr11 88310005 88310336 -33533520 + MARNA DNA Mariner 189 529 -57 6 1258 589 294 134 0 chr11 88310464 88310658 -33533198 + B4A SINE B4 50 269 -23 6 1258 549 0 0 0 chr11 88310658 88310719 -33533137 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1258 446 207 12 0 chr11 88311921 88312003 -33531853 - PB1D9 SINE Alu -9 111 29 6 1258 1072 296 88 58 chr11 88312516 88312860 -33530996 + Tigger7 DNA MER2_type 162 533 -1958 6 1258 1590 32 0 5 chr11 88312860 88313046 -33530810 - B2_Mm1a SINE B2 -7 186 2 6 1258 1072 296 88 58 chr11 88313046 88313132 -33530724 + Tigger7 DNA MER2_type 534 605 -1886 6 1258 274 161 111 0 chr11 88313193 88313274 -33530582 - Lx6 LINE L1 0 7460 7371 6 1258 497 276 89 26 chr11 88314082 88314272 -33529584 + B4A SINE B4 66 267 -25 6 1258 432 0 0 0 chr11 88314288 88314336 -33529520 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1258 24 0 0 0 chr11 88314551 88314575 -33529281 + AT_rich Low_complexity Low_complexity 1 24 0 6 1258 261 333 52 29 chr11 88315374 88315510 -33528346 - MIR SINE MIR -82 180 42 6 1258 311 0 0 25 chr11 88316817 88316857 -33526999 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1258 1212 41 0 7 chr11 88316857 88316996 -33526860 - B1_Mus1 SINE Alu -9 139 1 6 1258 237 280 36 139 chr11 88317105 88317242 -33526614 - MT2B2 LTR ERVL -294 290 168 6 1258 300 350 10 20 chr11 88317317 88317416 -33526440 + MLT1G LTR MaLR 198 295 -296 6 1258 285 307 52 85 chr11 88317433 88317586 -33526270 + MLT1G LTR MaLR 400 547 -22 6 1258 592 215 99 0 chr11 88317816 88317937 -33525919 - B1_Mur2 SINE Alu -13 136 4 6 1258 1682 199 82 22 chr11 88318086 88318503 -33525353 + MYSERV-int LTR ERVK 6107 6548 -2 6 1258 3349 128 26 47 chr11 88318504 88319084 -33524772 + RLTR12A LTR ERVK 1 568 0 6 1258 657 226 22 8 chr11 88319086 88319220 -33524636 + B3A SINE B2 16 151 -47 6 1258 465 19 0 0 chr11 88319222 88319276 -33524580 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1258 523 258 55 49 chr11 88319348 88319511 -33524345 + RSINE1 SINE B4 2 165 0 6 1258 209 327 43 57 chr11 88320493 88320611 -33523245 + MIR SINE MIR 1 121 -155 6 1258 375 175 62 14 chr11 88320717 88320798 -33523058 - B1F SINE Alu -6 143 40 6 1258 726 172 271 6 chr11 88320911 88321081 -33522775 + B3 SINE B2 1 215 -1 6 1258 380 325 32 19 chr11 88322884 88323038 -33520818 + L2a LINE L2 3265 3420 -6 6 1258 252 265 14 14 chr11 88323044 88323113 -33520743 + MIRm SINE MIR 70 138 -138 6 1258 225 305 24 24 chr11 88323630 88323714 -33520142 + MIRc SINE MIR 115 198 -70 6 1258 192 125 0 0 chr11 88325344 88325376 -33518480 + (GGGGA)n Simple_repeat Simple_repeat 1 32 0 6 1258 344 273 56 40 chr11 88328051 88328177 -33515679 - MIR3 SINE MIR -41 167 40 6 1258 662 285 73 29 chr11 88331486 88331692 -33512164 + B3 SINE B2 2 216 0 6 1258 938 141 0 7 chr11 88331727 88331870 -33511986 + B1_Mur3 SINE Alu 1 142 -7 6 1258 265 328 8 108 chr11 88331959 88332089 -33511767 - PB1D10 SINE Alu 0 117 1 6 1258 487 345 13 7 chr11 88332089 88332156 -33511700 - ID SINE ID -142 82 15 6 1258 690 147 17 0 chr11 88332171 88332287 -33511569 - B1_Mus1 SINE Alu -5 143 26 6 1258 335 269 164 113 chr11 88332296 88332455 -33511401 + LTR50 LTR ERVL 119 285 -510 6 1258 352 212 188 0 chr11 88332508 88332588 -33511268 - ID_B1 SINE B4 -117 107 13 6 1258 971 125 21 0 chr11 88332628 88332772 -33511084 - B1_Mur3 SINE Alu -1 148 2 6 1258 1609 47 0 0 chr11 88333305 88333496 -33510360 - B2_Mm1t SINE B2 -2 191 1 6 1258 235 184 102 0 chr11 88333670 88333719 -33510137 + LTR50 LTR ERVL 735 788 -7 6 1258 284 377 8 8 chr11 88334214 88334337 -33509519 - MIR3 SINE MIR -10 198 76 6 1258 445 248 133 0 chr11 88336042 88336155 -33507701 + B1_Mur1 SINE Alu 1 128 -21 6 1258 39 22 0 0 chr11 88336754 88336800 -33507056 + AT_rich Low_complexity Low_complexity 1 46 0 6 1258 188 319 94 75 chr11 88337065 88337319 -33506537 + L2b LINE L2 3116 3374 -1 6 1258 585 0 0 0 chr11 88339058 88339123 -33504733 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1258 526 246 118 48 chr11 88339551 88339710 -33504146 + MLT1J2 LTR MaLR 215 391 -57 6 1258 1253 153 9 31 chr11 88339710 88339939 -33503917 - URR1B DNA MER1_type 0 225 2 6 1258 526 242 121 46 chr11 88339939 88339978 -33503878 + MLT1J2 LTR MaLR 392 436 -12 6 1258 276 30 0 0 chr11 88340795 88340828 -33503028 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1259 295 331 118 6 chr11 88342999 88343160 -33500696 - MIRc SINE MIR -38 230 52 6 1259 540 0 0 0 chr11 88343792 88343852 -33500004 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1259 1417 89 21 0 chr11 88344288 88344478 -33499378 + B2_Mm2 SINE B2 2 195 0 6 1259 1282 60 53 32 chr11 88344626 88344816 -33499040 + B2_Mm2 SINE B2 2 195 0 6 1259 1467 244 30 22 chr11 88345089 88345468 -33498388 + MTD LTR MaLR 10 419 0 6 1259 1583 47 0 15 chr11 88346813 88347008 -33496848 - B2_Mm1t SINE B2 -1 192 1 6 1259 256 250 95 48 chr11 88348959 88348972 -33494884 - ID SINE ID -135 89 6 6 1259 316 254 0 0 chr11 88348972 88349039 -33494817 - tRNA-Ala-GCA tRNA tRNA -8 67 1 6 1259 201 270 32 0 chr11 88349403 88349466 -33494390 + CT-rich Low_complexity Low_complexity 2 66 0 6 1259 835 314 57 41 chr11 88351587 88351975 -33491881 + MLT1C LTR MaLR 67 460 -7 6 1259 615 14 0 0 chr11 88353590 88353662 -33490194 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1259 701 175 232 43 chr11 88354184 88354369 -33489487 + URR1B DNA MER1_type 5 224 -1 6 1259 189 212 123 96 chr11 88355639 88355712 -33488144 + L2c LINE L2 3263 3337 -50 6 1259 405 331 53 29 chr11 88357436 88357607 -33486249 + MIRb SINE MIR 14 188 -80 6 1259 243 0 0 0 chr11 88358150 88358177 -33485679 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1259 961 182 125 0 chr11 88358413 88358605 -33485251 - B3 SINE B2 0 216 1 6 1259 567 0 0 0 chr11 88358664 88358727 -33485129 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1259 1285 246 143 61 chr11 88359237 88359784 -33484072 + Lx9 LINE L1 6910 7524 -120 6 1259 1235 43 0 0 chr11 88359784 88359925 -33483931 + B1_Mus1 SINE Alu 2 142 -6 6 1259 477 0 0 0 chr11 88359927 88359980 -33483876 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 6 1259 1285 246 143 61 chr11 88359980 88360100 -33483756 + Lx9 LINE L1 7525 7635 -9 6 1259 603 0 0 0 chr11 88360160 88360227 -33483629 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1259 359 288 171 93 chr11 88360307 88360629 -33483227 + MTEa LTR MaLR 1 347 -32 6 1259 320 281 76 22 chr11 88364227 88364379 -33479477 - MIRc SINE MIR -66 202 40 6 1259 522 0 0 0 chr11 88364536 88364594 -33479262 + (CAG)n Simple_repeat Simple_repeat 2 59 0 6 1259 190 256 0 0 chr11 88365842 88365881 -33477975 - L2b LINE L2 -24 3351 3313 6 1259 780 152 100 30 chr11 88366155 88366326 -33477530 + B3 SINE B2 2 193 0 6 1259 660 230 23 67 chr11 88367377 88367548 -33476308 + ID_B1 SINE B4 81 241 -51 6 1259 261 83 0 0 chr11 88368233 88368269 -33475587 + (GGA)n Simple_repeat Simple_repeat 2 37 0 6 1259 335 274 14 0 chr11 88369549 88369622 -33474234 + ID2 SINE ID 7 80 -3 6 1259 522 0 0 0 chr11 88370157 88370215 -33473641 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1259 1312 56 11 0 chr11 88370219 88370397 -33473459 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1259 489 88 0 0 chr11 88370420 88370500 -33473356 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 6 1259 309 246 13 76 chr11 88370967 88371046 -33472810 - RSINE1 SINE B4 -1 164 91 6 1259 181 119 67 67 chr11 88371485 88371530 -33472326 - L2b LINE L2 -14 3361 3317 7 1259 606 307 60 72 chr11 88373052 88373470 -33470386 + L1MA7 LINE L1 5813 6225 -66 7 1259 665 255 14 7 chr11 88373525 88373663 -33470193 - RSINE1 SINE B4 -21 144 6 7 1259 431 338 118 26 chr11 88374141 88374481 -33469375 - MLT1C LTR MaLR -44 423 53 7 1259 229 333 54 27 chr11 88376824 88376935 -33466921 + MTE2a LTR MaLR 10 123 -296 7 1259 228 67 0 0 chr11 88376949 88376979 -33466877 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7 1259 1081 131 0 12 chr11 88376979 88377141 -33466715 - B2_Mm2 SINE B2 -34 161 2 7 1259 990 273 70 39 chr11 88377141 88377409 -33466447 + MTE2a LTR MaLR 83 360 -19 7 1259 666 37 0 0 chr11 88377409 88377490 -33466366 + (GGGA)n Simple_repeat Simple_repeat 1 81 0 7 1259 990 273 70 39 chr11 88377490 88377507 -33466349 + MTE2a LTR MaLR 361 377 -2 7 1259 307 304 192 34 chr11 88377893 88378101 -33465755 - MIR SINE MIR -5 257 17 7 1259 369 62 0 0 chr11 88378268 88378316 -33465540 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 7 1259 202 288 29 29 chr11 88378424 88378492 -33465364 - L3 LINE CR1 -40 4449 4382 7 1259 342 0 0 0 chr11 88378914 88378952 -33464904 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1259 209 304 0 0 chr11 88379497 88379543 -33464313 + MER5A DNA MER1_type 143 188 -1 7 1259 308 244 0 37 chr11 88381018 88381099 -33462757 - Helitron2Na_Mam RC Helitron? -90 234 157 7 1259 274 229 16 0 chr11 88381300 88381361 -33462495 + L1M5 LINE L1 5535 5596 -528 7 1259 720 0 0 0 chr11 88382668 88382748 -33461108 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 7 1259 315 323 124 16 chr11 88383946 88384075 -33459781 + ID_B1 SINE B4 82 224 0 7 1259 281 333 32 48 chr11 88384619 88384805 -33459051 + MIR SINE MIR 66 248 -14 7 1259 440 244 0 0 chr11 88384819 88384901 -33458955 + ID4_ SINE ID 2 83 0 7 1259 592 305 120 30 chr11 88384951 88385218 -33458638 + B4A SINE B4 2 292 0 7 1259 282 279 59 0 chr11 88385267 88385335 -33458521 + B4A SINE B4 218 289 -3 7 1259 192 152 0 0 chr11 88387060 88387093 -33456763 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7 1259 883 285 34 5 chr11 88388567 88388775 -33455081 + MER58A DNA MER1_type 8 221 -3 7 1259 213 94 0 0 chr11 88388880 88388912 -33454944 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1259 216 0 0 0 chr11 88389594 88389618 -33454238 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1259 721 224 60 49 chr11 88391069 88391252 -33452604 + ID_B1 SINE B4 23 207 -17 7 1259 288 274 46 53 chr11 88391138 88391269 -33452587 + B1_Mus2 SINE Alu 13 142 -5 7 1259 1099 196 10 25 chr11 88391387 88391586 -33452270 - B3 SINE B2 -20 196 1 7 1259 238 338 19 82 chr11 88393005 88393163 -33450693 - Tigger15a DNA TcMar -465 250 103 7 1259 217 288 54 131 chr11 88393669 88393837 -33450019 - MIRb SINE MIR -10 258 104 7 1259 472 330 77 5 chr11 88393934 88394129 -33449727 + MER58A DNA MER1_type 14 222 -2 7 1259 995 141 0 26 chr11 88394323 88394476 -33449380 - B1_Mur4 SINE Alu 0 150 2 7 1259 831 273 11 5 chr11 88394529 88394713 -33449143 + ID_B1 SINE B4 12 196 -28 7 1259 25 0 0 0 chr11 88395089 88395114 -33448742 + AT_rich Low_complexity Low_complexity 1 25 0 7 1259 189 0 0 0 chr11 88395536 88395557 -33448299 + (TTA)n Simple_repeat Simple_repeat 2 22 0 7 1259 180 0 0 0 chr11 88398201 88398221 -33445635 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1259 432 55 0 0 chr11 88399238 88399293 -33444563 + (GGA)n Simple_repeat Simple_repeat 2 56 0 7 1259 200 189 136 98 chr11 88399563 88399649 -33444207 + MIRm SINE MIR 18 105 -157 7 1259 685 272 101 0 chr11 88400161 88400319 -33443537 + MER58A DNA MER1_type 1 174 -50 7 1259 231 161 0 0 chr11 88404067 88404123 -33439733 + T-rich Low_complexity Low_complexity 1 56 0 7 1259 232 254 18 0 chr11 88404259 88404314 -33439542 + ID4 SINE ID 28 83 0 7 1259 22 0 0 0 chr11 88405170 88405192 -33438664 + AT_rich Low_complexity Low_complexity 1 22 0 7 1259 1208 49 7 0 chr11 88405195 88405339 -33438517 + B1_Mm SINE Alu 2 146 -1 7 1259 201 195 0 0 chr11 88405339 88405380 -33438476 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1259 594 0 0 0 chr11 88405394 88405460 -33438396 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1259 247 252 26 120 chr11 88406314 88406375 -33437481 - RMER12 LTR ERVK -484 838 777 7 1259 405 0 0 0 chr11 88406375 88406420 -33437436 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1259 247 252 26 120 chr11 88406420 88406475 -33437381 - RMER12 LTR ERVK -546 776 733 7 1259 498 306 116 124 chr11 88407179 88407559 -33436297 + MTEa LTR MaLR 1 377 -2 7 1259 1281 86 32 5 chr11 88407908 88408095 -33435761 - B2_Mm2 SINE B2 -2 193 2 7 1259 660 26 0 0 chr11 88408233 88408311 -33435545 + (TTTCC)n Simple_repeat Simple_repeat 4 81 0 7 1259 900 0 0 0 chr11 88408825 88408925 -33434931 + (TC)n Simple_repeat Simple_repeat 2 101 0 7 1259 1401 95 21 0 chr11 88462858 88463048 -33380808 + B2_Mm2 SINE B2 1 194 -1 7 1259 717 73 0 0 chr11 88463174 88463270 -33380586 + (GGGA)n Simple_repeat Simple_repeat 1 96 0 7 1259 261 375 0 0 chr11 88464383 88464463 -33379393 + PB1D10 SINE Alu 23 102 -15 7 1259 576 0 0 0 chr11 88465642 88465706 -33378150 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1259 34 0 0 0 chr11 88466927 88466961 -33376895 + AT_rich Low_complexity Low_complexity 1 34 0 7 1259 192 289 0 0 chr11 88467338 88467390 -33376466 + L2c LINE L2 3116 3167 -259 7 1259 282 254 17 0 chr11 88467660 88467719 -33376137 + L2c LINE L2 3278 3337 -50 7 1259 244 336 71 18 chr11 88467946 88468058 -33375798 - MER3 DNA MER1_type -16 193 76 7 1259 794 194 0 0 chr11 88468292 88468421 -33375435 + B3 SINE B2 2 130 -86 7 1259 28 0 0 0 chr11 88468558 88468586 -33375270 + AT_rich Low_complexity Low_complexity 1 28 0 7 1259 307 241 154 34 chr11 88468596 88468716 -33375140 + PB1D10 SINE Alu 1 114 -6 7 1259 432 0 0 0 chr11 88469768 88469816 -33374040 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 7 1259 180 0 0 0 chr11 88470046 88470066 -33373790 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1259 180 111 0 0 chr11 88470179 88470206 -33373650 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 7 1259 454 269 0 30 chr11 88472011 88472261 -33371595 + (TTGTG)n Simple_repeat Simple_repeat 1 242 0 7 1259 355 267 47 70 chr11 88472365 88472494 -33371362 + MIRc SINE MIR 25 150 -118 7 1259 1679 180 128 8 chr11 88473075 88473428 -33370428 - MTD LTR MaLR -15 404 10 7 1260 519 245 61 117 chr11 88473800 88474013 -33369843 + RMER30 DNA MER1_type 1 201 -1 7 1260 376 169 14 14 chr11 88474553 88474625 -33369231 + 5S rRNA rRNA 19 90 -31 7 1260 336 348 27 34 chr11 88475721 88475867 -33367989 + MIR3 SINE MIR 42 186 -22 7 1260 21 0 0 0 chr11 88475931 88475952 -33367904 + AT_rich Low_complexity Low_complexity 1 21 0 7 1260 1824 163 121 30 chr11 88476824 88477197 -33366659 + MTD LTR MaLR 10 416 -3 7 1260 222 134 45 0 chr11 88477273 88477340 -33366516 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1260 1118 58 0 7 chr11 88477373 88477511 -33366345 - B1_Mus1 SINE Alu -10 138 2 7 1260 556 196 54 0 chr11 88477622 88477734 -33366122 + B1F1 SINE Alu 31 148 -1 7 1260 1340 70 41 0 chr11 88477961 88478133 -33365723 + B2_Mm2 SINE B2 1 179 -16 7 1260 693 66 0 0 chr11 88478133 88478224 -33365632 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 7 1260 1078 104 104 0 chr11 88478978 88479142 -33364714 + B2_Mm2 SINE B2 11 191 -4 7 1260 229 269 0 0 chr11 88479327 88479379 -33364477 + (CTGGGG)n Simple_repeat Simple_repeat 1 52 0 7 1260 389 258 182 8 chr11 88480676 88480797 -33363059 - Charlie1b DNA MER1_type -366 157 16 7 1260 22 35 0 0 chr11 88481471 88481500 -33362356 + AT_rich Low_complexity Low_complexity 1 29 0 7 1260 260 284 20 120 chr11 88482192 88482292 -33361564 + MT2B2 LTR ERVL 157 246 -338 7 1260 462 272 0 19 chr11 88482216 88482321 -33361535 + PB1D10 SINE Alu 13 115 -2 7 1260 631 264 110 181 chr11 88482349 88482659 -33361197 + B4 SINE B4 2 289 -3 7 1260 268 327 11 37 chr11 88483073 88483206 -33360650 + ID4 SINE ID 3 130 -22 7 1260 914 172 131 39 chr11 88483437 88483643 -33360213 + URR1B DNA MER1_type 1 225 0 7 1260 216 0 0 0 chr11 88484122 88484146 -33359710 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1260 205 195 0 0 chr11 88484843 88484884 -33358972 + T-rich Low_complexity Low_complexity 1 41 0 7 1260 301 289 137 52 chr11 88485429 88485677 -33358179 - L1M3 LINE L1 -376 5804 5536 7 1260 1165 190 54 0 chr11 88485729 88485934 -33357922 - B3 SINE B2 0 216 1 7 1260 570 270 135 22 chr11 88486012 88486190 -33357666 - ID_B1 SINE B4 -25 199 2 7 1260 282 63 0 87 chr11 88486974 88487043 -33356813 + C-rich Low_complexity Low_complexity 4 66 0 7 1260 470 228 97 8 chr11 88488117 88488241 -33355615 + B1F1 SINE Alu 5 139 -10 7 1260 192 40 0 0 chr11 88488246 88488271 -33355585 + (CAA)n Simple_repeat Simple_repeat 2 26 0 7 1260 182 267 0 22 chr11 88489174 88489220 -33354636 - MIRc SINE MIR -189 79 35 7 1260 267 301 0 40 chr11 88492191 88492267 -33351589 - MIRc SINE MIR -129 139 67 7 1260 819 226 76 110 chr11 88492828 88493092 -33350764 - MTE2b LTR MaLR -119 260 6 7 1260 265 287 90 37 chr11 88493760 88493894 -33349962 - MLT1A LTR MaLR 0 408 268 7 1260 359 296 45 80 chr11 88493953 88494129 -33349727 - MLT1A LTR MaLR -204 170 1 7 1260 266 314 89 25 chr11 88494134 88494291 -33349565 + L2a LINE L2 3198 3364 -62 7 1260 830 311 39 31 chr11 88494424 88494779 -33349077 + MER58D DNA MER1_type 28 385 -1 7 1260 2127 175 50 7 chr11 88494934 88495337 -33348519 - MTC LTR MaLR 0 421 2 8 1260 388 300 51 62 chr11 88496583 88496754 -33347102 + MER44D DNA MER2_type 1 175 -164 8 1260 183 80 0 0 chr11 88498454 88498479 -33345377 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1260 766 218 141 16 chr11 88500675 88500866 -33342990 - ID_B1 SINE B4 -8 216 2 1 1260 218 348 21 33 chr11 88501046 88501137 -33342719 + B1F1 SINE Alu 1 99 -21 2 1260 710 93 0 92 chr11 88501137 88501256 -33342600 + B1_Mur4 SINE Alu 42 149 -1 3 1260 768 259 21 21 chr11 88501268 88501461 -33342395 + B3A SINE B2 6 198 0 4 1260 560 200 92 0 chr11 88501630 88501760 -33342096 + RSINE1 SINE B4 3 144 -21 5 1260 252 0 0 0 chr11 88501771 88501799 -33342057 + (CAGG)n Simple_repeat Simple_repeat 1 28 0 6 1260 459 92 0 0 chr11 88501799 88501864 -33341992 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1260 1350 98 0 44 chr11 88501963 88502166 -33341690 + B2_Mm2 SINE B2 2 195 0 8 1260 735 306 141 49 chr11 88503068 88503828 -33340028 + L1MC4 LINE L1 6671 7500 -542 9 1260 679 200 233 48 chr11 88503839 88504049 -33339807 - B4A SINE B4 -41 251 3 1 1260 680 271 103 54 chr11 88504273 88504476 -33339380 - ID_B1 SINE B4 -7 217 5 1 1260 180 245 154 19 chr11 88504630 88504734 -33339122 + MIRc SINE MIR 93 210 -58 1 1260 189 0 0 0 chr11 88504865 88504886 -33338970 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1260 774 264 22 67 chr11 88505004 88505227 -33338629 + B4 SINE B4 8 220 -72 1 1260 557 292 44 0 chr11 88505574 88505711 -33338145 + RSINE1 SINE B4 23 165 0 1 1260 244 302 23 11 chr11 88506367 88506454 -33337402 + GA-rich Low_complexity Low_complexity 5 92 0 1 1260 547 227 51 135 chr11 88508887 88509065 -33334791 - RSINE1 SINE B4 -2 163 1 1 1260 927 145 158 21 chr11 88509147 88509337 -33334519 - URR1A DNA MER1_type -10 216 1 1 1260 195 42 0 0 chr11 88510338 88510362 -33333494 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1260 194 287 59 147 chr11 88511134 88511236 -33332620 - MIR SINE MIR -95 113 21 2 1260 408 179 0 0 chr11 88511475 88511553 -33332303 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1260 186 347 116 0 chr11 88512077 88512172 -33331684 + MIRc SINE MIR 19 124 -144 2 1260 445 327 69 0 chr11 88512312 88512514 -33331342 + MLT1F1 LTR MaLR 354 569 0 2 1260 318 263 66 0 chr11 88512704 88512841 -33331015 + L1MA6 LINE L1 6103 6248 -52 2 1260 197 59 0 89 chr11 88512920 88512976 -33330880 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 2 1260 296 316 0 12 chr11 88512981 88512995 -33330861 - B4 SINE B4 -133 159 86 2 1260 332 183 0 16 chr11 88512995 88513056 -33330800 - B1F SINE Alu -89 60 1 2 1260 180 0 0 0 chr11 88513610 88513630 -33330226 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 2 1260 560 215 119 8 chr11 88514492 88514647 -33329209 - MIR SINE MIR -85 183 7 2 1260 190 284 45 73 chr11 88514904 88515014 -33328842 - L4 LINE RTE -205 1824 1718 3 1260 638 216 267 31 chr11 88517727 88517952 -33325904 - B4A SINE B4 -14 278 1 3 1260 301 250 58 95 chr11 88518195 88518332 -33325524 - L1M5 LINE L1 -368 5756 5625 3 1260 323 344 142 4 chr11 88519393 88519618 -33324238 - MER46C DNA MER2_type -3 335 80 3 1260 1250 48 0 0 chr11 88519976 88520123 -33323733 + B1_Mus2 SINE Alu 1 147 0 3 1260 22 35 0 0 chr11 88520123 88520152 -33323704 + AT_rich Low_complexity Low_complexity 1 29 0 3 1260 308 269 100 18 chr11 88520393 88520432 -33323424 - ID_B1 SINE B4 -105 119 1 3 1260 313 229 0 14 chr11 88520432 88520503 -33323353 - ID4_ SINE ID -13 70 1 3 1260 286 306 43 43 chr11 88520503 88520619 -33323237 - PB1D10 SINE Alu 0 117 2 3 1260 473 176 59 99 chr11 88521341 88521442 -33322414 - B1_Mur2 SINE Alu -17 132 36 3 1260 336 24 0 0 chr11 88521815 88521856 -33322000 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1260 247 327 0 73 chr11 88528093 88528202 -33315654 - MER5A1 DNA MER1_type 0 166 66 4 1260 903 287 37 81 chr11 88528482 88528865 -33314991 + MLT1B LTR MaLR 1 366 -24 4 1260 285 29 0 0 chr11 88529230 88529264 -33314592 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1260 369 43 0 0 chr11 88529264 88529311 -33314545 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1260 1279 34 0 0 chr11 88529338 88529485 -33314371 - B1_Mus1 SINE Alu 0 148 2 4 1260 317 312 29 77 chr11 88531073 88531243 -33312613 - MIRc SINE MIR -66 202 41 4 1260 645 310 58 5 chr11 88532904 88533092 -33310764 + B4 SINE B4 1 198 -94 4 1260 291 300 41 118 chr11 88532948 88533118 -33310738 + MT2B2 LTR ERVL 125 281 -303 4 1260 884 115 159 29 chr11 88533263 88533392 -33310464 + B2_Mm2 SINE B2 1 146 -49 4 1260 753 125 0 0 chr11 88533392 88533512 -33310344 + (TA)n Simple_repeat Simple_repeat 1 120 0 5 1260 884 115 159 29 chr11 88533512 88533552 -33310304 + B2_Mm2 SINE B2 147 192 -3 4 1260 437 283 91 36 chr11 88534175 88534201 -33309655 + B4 SINE B4 56 107 -185 5 1260 501 92 0 0 chr11 88534201 88534266 -33309590 + B1_Mur4 SINE Alu 1 65 -85 5 1260 437 283 91 36 chr11 88534266 88534308 -33309548 + B4 SINE B4 108 196 -96 5 1260 416 306 0 0 chr11 88534308 88534419 -33309437 + PB1D7 SINE Alu 5 115 -5 5 1260 437 286 83 37 chr11 88534419 88534469 -33309387 + B4 SINE B4 197 248 -44 5 1260 1334 153 42 0 chr11 88534529 88534744 -33309112 + URR1B DNA MER1_type 1 224 -1 5 1260 1565 168 115 129 chr11 88535595 88535932 -33307924 - MTC LTR MaLR -8 413 73 5 1260 1100 82 0 39 chr11 88535932 88536085 -33307771 - B1_Mus1 SINE Alu -1 147 1 5 1260 1565 168 115 129 chr11 88536085 88536164 -33307692 - MTC LTR MaLR -349 72 3 5 1260 360 0 0 0 chr11 88536327 88536367 -33307489 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1260 319 301 53 9 chr11 88536784 88536898 -33306958 - PB1 SINE Alu -4 123 5 5 1260 522 0 0 0 chr11 88537917 88537975 -33305881 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1260 312 91 0 0 chr11 88537991 88538035 -33305821 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1260 483 48 0 0 chr11 88538281 88538343 -33305513 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1260 252 0 0 0 chr11 88538862 88538890 -33304966 + (CAGCC)n Simple_repeat Simple_repeat 3 30 0 6 1260 238 217 0 0 chr11 88539719 88539765 -33304091 + L1M5 LINE L1 5392 5437 -803 6 1260 471 235 26 0 chr11 88540091 88540191 -33303665 - PB1D10 SINE Alu 0 117 14 6 1260 291 347 88 66 chr11 88540822 88541004 -33302852 + ORR1E LTR MaLR 1 186 -173 6 1260 267 259 42 36 chr11 88541016 88541127 -33302729 + ORR1E LTR MaLR 262 377 -2 6 1260 204 67 0 0 chr11 88542124 88542154 -33301702 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 6 1260 354 324 22 18 chr11 88542481 88542707 -33301149 - L1MD3 LINE L1 -14 7981 7755 6 1260 294 29 0 0 chr11 88542813 88542848 -33301008 + (TCC)n Simple_repeat Simple_repeat 2 36 0 6 1260 234 234 0 18 chr11 88544460 88544528 -33299328 + L2c LINE L2 3309 3387 0 6 1260 243 332 186 47 chr11 88546830 88547045 -33296811 + MamSINE1 SINE tRNA 23 267 -23 7 1260 692 266 12 12 chr11 88547943 88548103 -33295753 + RSINE1 SINE B4 6 165 0 7 1260 384 231 0 42 chr11 88548246 88548341 -33295515 - MIR SINE MIR -81 181 91 7 1260 194 304 53 97 chr11 88548285 88548398 -33295458 + L2 LINE L2 1496 1603 -1816 7 1260 644 12 25 0 chr11 88549869 88549949 -33293907 + (GGGGA)n Simple_repeat Simple_repeat 1 82 0 7 1260 198 71 0 0 chr11 88552579 88552607 -33291249 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 7 1260 429 170 194 29 chr11 88553408 88553511 -33290345 - RSINE1 SINE B4 -38 127 8 7 1260 186 43 0 0 chr11 88554076 88554099 -33289757 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 7 1260 1305 83 0 0 chr11 88554099 88554278 -33289578 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 7 1260 1128 128 0 0 chr11 88554312 88554491 -33289365 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 1260 255 61 0 0 chr11 88556249 88556282 -33287574 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1260 240 35 0 0 chr11 88556702 88556731 -33287125 + (TTC)n Simple_repeat Simple_repeat 2 30 0 8 1260 406 229 47 19 chr11 88556991 88557098 -33286758 + RSINE1 SINE B4 34 143 -22 8 1260 199 282 57 79 chr11 88557696 88557898 -33285958 + L2b LINE L2 3002 3208 -179 8 1260 637 169 12 150 chr11 88559714 88559881 -33283975 - B1_Mur4 SINE Alu -6 144 1 8 1260 613 235 117 51 chr11 88560035 88560232 -33283624 + B3 SINE B2 1 210 -6 8 1260 1131 82 0 7 chr11 88560403 88560551 -33283305 - B1_Mus1 SINE Alu 0 148 2 8 1260 196 268 134 0 chr11 88560605 88560687 -33283169 - MIRc SINE MIR -144 124 32 8 1260 237 273 65 75 chr11 88560943 88561051 -33282805 - MIRb SINE MIR -35 233 120 8 1260 1343 73 11 32 chr11 88561051 88561236 -33282620 + B2_Mm2 SINE B2 1 181 -14 8 1260 197 291 68 135 chr11 88561236 88561334 -33282522 - MIR SINE MIR -143 119 37 8 1260 22 0 0 0 chr11 88562908 88562930 -33280926 + AT_rich Low_complexity Low_complexity 1 22 0 9 1260 626 149 0 0 chr11 88562940 88563034 -33280822 - B1_Mur2 SINE Alu -48 101 8 9 1260 390 156 46 111 chr11 88563034 88563048 -33280808 - MT2B LTR ERVL -347 254 154 9 1260 606 311 0 0 chr11 88563276 88563411 -33280445 + RSINE1 SINE B4 31 165 0 9 1260 306 50 0 0 chr11 88563430 88563470 -33280386 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1260 243 0 0 0 chr11 88563607 88563634 -33280222 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1260 260 53 0 26 chr11 88564031 88564070 -33279786 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 9 1260 259 200 0 0 chr11 88565361 88565406 -33278450 + RMER30 DNA MER1_type 7 51 -151 9 1260 1157 58 0 0 chr11 88565561 88565699 -33278157 - B1_Mus1 SINE Alu -9 139 2 9 1260 426 85 0 0 chr11 88566023 88566082 -33277774 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1260 297 0 0 0 chr11 88567602 88567635 -33276221 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1260 629 293 115 16 chr11 88569127 88569318 -33274538 + ID_B1 SINE B4 15 224 0 1 1260 189 273 18 35 chr11 88569454 88569511 -33274345 - MIRc SINE MIR -130 138 83 1 1260 481 273 57 26 chr11 88569635 88569662 -33274194 - B3A SINE B2 0 198 171 1 1260 429 20 0 0 chr11 88569662 88569712 -33274144 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1260 481 273 57 26 chr11 88569712 88569876 -33273980 - B3A SINE B2 -28 170 1 1 1260 378 0 0 0 chr11 88570797 88570839 -33273017 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1260 204 348 22 21 chr11 88571645 88571753 -33272103 - MIR SINE MIR -135 133 22 1 1260 221 338 0 14 chr11 88571840 88571909 -33271947 - MIR SINE MIR -79 183 116 1 1260 252 0 0 0 chr11 88572227 88572255 -33271601 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1260 585 0 0 0 chr11 88572606 88572671 -33271185 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1 1260 348 24 0 0 chr11 88574269 88574310 -33269546 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1 1260 580 218 49 14 chr11 88574428 88574572 -33269284 + B1F SINE Alu 1 149 0 1 1260 21 0 0 0 chr11 88575632 88575653 -33268203 + AT_rich Low_complexity Low_complexity 1 21 0 1 1260 558 0 0 0 chr11 88575999 88576061 -33267795 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1260 32 0 0 0 chr11 88576950 88576982 -33266874 + AT_rich Low_complexity Low_complexity 1 32 0 1 1260 29 0 0 0 chr11 88578296 88578325 -33265531 + AT_rich Low_complexity Low_complexity 1 29 0 1 1260 204 40 0 0 chr11 88578689 88578714 -33265142 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1260 26 0 0 0 chr11 88579237 88579263 -33264593 + GC_rich Low_complexity Low_complexity 1 26 0 1 1260 269 118 20 0 chr11 88579655 88579706 -33264150 + (TCC)n Simple_repeat Simple_repeat 1 52 0 1 1260 182 263 0 0 chr11 88580746 88580784 -33263072 + L2b LINE L2 3322 3359 -16 1 1260 610 266 62 19 chr11 88582012 88582223 -33261633 - ID_B1 SINE B4 -2 222 3 1 1260 189 0 0 0 chr11 88582396 88582417 -33261439 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1260 426 325 83 50 chr11 88582591 88582954 -33260902 + L2 LINE L2 2134 2508 -911 1 1260 21 82 0 0 chr11 88583054 88583103 -33260753 + AT_rich Low_complexity Low_complexity 1 49 0 1 1260 367 304 29 88 chr11 88583103 88583240 -33260616 - RSINE1 SINE B4 -24 141 13 1 1260 225 196 0 0 chr11 88583703 88583749 -33260107 + T-rich Low_complexity Low_complexity 1 46 0 1 1260 631 241 66 0 chr11 88583787 88583924 -33259932 + B1F2 SINE Alu 2 147 -2 1 1260 667 142 0 28 chr11 88584124 88584233 -33259623 - B1_Mus2 SINE Alu 0 147 42 1 1260 240 239 129 114 chr11 88584129 88584261 -33259595 - B4 SINE B4 -71 221 88 1 1260 387 228 27 90 chr11 88584602 88584713 -33259143 - B3A SINE B2 -94 104 1 1 1260 300 257 64 35 chr11 88584741 88584882 -33258974 - L1M2 LINE L1 -2916 3227 3083 1 1260 340 219 0 0 chr11 88585007 88585071 -33258785 - ID4_ SINE ID -17 66 3 1 1260 341 268 131 20 chr11 88585136 88585235 -33258621 - PB1D10 SINE Alu 0 117 8 1 1260 775 158 0 115 chr11 88585343 88585508 -33258348 - B1_Mur4 SINE Alu -2 148 3 1 1260 344 60 0 0 chr11 88585559 88585609 -33258247 + B1_Mus2 SINE Alu 98 147 0 1 1260 1216 62 0 0 chr11 88585698 88585844 -33258012 - B1_Mus2 SINE Alu 0 147 2 1 1260 290 329 84 27 chr11 88585889 88586114 -33257742 - L1M5 LINE L1 -3381 2765 2528 1 1260 641 243 53 26 chr11 88586118 88586270 -33257586 + RSINE1 SINE B4 6 161 -4 1 1260 1159 88 0 0 chr11 88586418 88586566 -33257290 + B1_Mus1 SINE Alu 1 148 0 1 1260 1416 77 27 11 chr11 88586667 88586851 -33257005 - B2_Mm2 SINE B2 -8 187 1 1 1260 354 61 0 0 chr11 88586855 88586904 -33256952 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1260 588 29 0 0 chr11 88586904 88586973 -33256883 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1260 333 0 0 0 chr11 88587119 88587156 -33256700 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 1 1260 423 263 21 10 chr11 88587157 88587253 -33256603 - ID_B1 SINE B4 -106 118 22 1 1260 970 230 10 0 chr11 88587328 88587532 -33256324 - B3 SINE B2 -10 206 1 1 1260 234 233 82 16 chr11 88587535 88587596 -33256260 + MLT1F2 LTR MaLR 496 560 0 1 1260 1155 75 7 0 chr11 88588439 88588586 -33255270 - B1_Mus1 SINE Alu 0 148 1 1 1260 216 0 0 0 chr11 88590207 88590231 -33253625 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1260 201 279 14 56 chr11 88590768 88590840 -33253016 + L3 LINE CR1 3754 3822 -667 1 1260 231 186 0 0 chr11 88590841 88590884 -33252972 + G-rich Low_complexity Low_complexity 6 48 0 1 1260 400 350 41 18 chr11 88590888 88591109 -33252747 + L3 LINE CR1 3830 4055 -434 1 1260 184 278 18 18 chr11 88591241 88591296 -33252560 + MIRc SINE MIR 116 170 -98 1 1260 207 387 0 32 chr11 88591346 88591469 -33252387 - L2c LINE L2 -18 3369 3251 1 1260 638 265 95 36 chr11 88591655 88591929 -33251927 + B4A SINE B4 3 292 0 1 1260 897 193 5 92 chr11 88592072 88592278 -33251578 + B3A SINE B2 3 190 -8 1 1260 2476 160 34 2 chr11 88592358 88592766 -33251090 - MTC LTR MaLR 0 421 1 1 1260 214 343 14 0 chr11 88592817 88592885 -33250971 + PB1D10 SINE Alu 3 71 -46 1 1260 390 244 11 11 chr11 88592885 88592976 -33250880 + BC1_Mm scRNA scRNA 3 93 -59 1 1260 396 0 0 0 chr11 88593034 88593078 -33250778 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 1 1260 699 181 86 8 chr11 88593078 88593206 -33250650 - B1_Mm SINE Alu -8 139 2 1 1260 1331 104 6 0 chr11 88593632 88593814 -33250042 + B2_Mm1t SINE B2 2 184 -9 1 1260 962 137 12 0 chr11 88593977 88594145 -33249711 + (TTCC)n Simple_repeat Simple_repeat 4 173 0 1 1260 6219 75 42 0 chr11 88594160 88594997 -33248859 - L1_Mus4 LINE L1 -1 6635 5764 1 1260 310 281 0 58 chr11 88595262 88595349 -33248507 - ID4_ SINE ID -1 82 1 1 1260 209 286 36 0 chr11 88595606 88595662 -33248194 + L2a LINE L2 3367 3424 -2 1 1260 1420 186 0 65 chr11 88596690 88596966 -33246890 - Lx5 LINE L1 -65 6985 6728 1 1260 785 222 0 0 chr11 88596969 88597099 -33246757 + B1_Mur1 SINE Alu 11 140 -9 1 1260 459 0 0 0 chr11 88597099 88597150 -33246706 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1260 832 86 117 0 chr11 88597154 88597282 -33246574 + B1_Mm SINE Alu 1 143 -4 1 1260 501 17 0 0 chr11 88597284 88597342 -33246514 + (TAA)n Simple_repeat Simple_repeat 3 60 0 1 1260 201 188 0 40 chr11 88597342 88597392 -33246464 + A-rich Low_complexity Low_complexity 5 52 0 1 1260 760 255 89 63 chr11 88597430 88597777 -33246079 + L1MB3 LINE L1 5686 6041 -142 1 1260 221 255 18 18 chr11 88597819 88597875 -33245981 + MIR SINE MIR 192 247 -15 1 1260 251 54 0 26 chr11 88598054 88598092 -33245764 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1 1260 1102 111 32 42 chr11 88598097 88598286 -33245570 + B2_Mm2 SINE B2 2 188 -7 1 1260 509 305 9 136 chr11 88598896 88598972 -33244884 + RMER30 DNA MER1_type 2 65 -137 1 1260 840 171 0 48 chr11 88598972 88599119 -33244737 + B1_Mur4 SINE Alu 2 141 -9 1 1260 189 0 0 0 chr11 88599119 88599140 -33244716 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1260 509 305 9 136 chr11 88599140 88599180 -33244676 + RMER30 DNA MER1_type 66 92 -110 1 1260 501 17 0 0 chr11 88599180 88599238 -33244618 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1260 279 0 0 0 chr11 88599238 88599268 -33244588 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1260 509 305 9 136 chr11 88599268 88599368 -33244488 + RMER30 DNA MER1_type 93 190 -12 1 1260 506 299 53 33 chr11 88599379 88599531 -33244325 + MER58A DNA MER1_type 30 184 -40 1 1260 326 151 74 90 chr11 88599533 88599675 -33244181 + B1_Mur2 SINE Alu 2 129 -20 1 1260 316 303 200 0 chr11 88600042 88600217 -33243639 - L1MC5 LINE L1 -67 7894 7685 1 1260 250 123 17 17 chr11 88600239 88600297 -33243559 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 1260 701 231 0 0 chr11 88600298 88600432 -33243424 - B1_Mur1 SINE Alu -14 135 2 1 1260 236 306 8 105 chr11 88600329 88600453 -33243403 - MT2B LTR ERVL -344 257 146 1 1260 811 89 106 0 chr11 88600883 88601006 -33242850 - B1_Mus2 SINE Alu -9 138 3 1 1260 414 261 45 9 chr11 88601144 88601256 -33242600 - PB1D7 SINE Alu -4 116 1 1 1260 479 233 34 8 chr11 88601667 88601800 -33242056 + B1F SINE Alu 1 136 -13 1 1260 1191 62 0 0 chr11 88601876 88602022 -33241834 + B1_Mus2 SINE Alu 2 147 0 1 1260 198 0 0 0 chr11 88602179 88602201 -33241655 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1260 1156 82 0 0 chr11 88602201 88602348 -33241508 - B1_Mus1 SINE Alu 0 148 2 1 1260 220 224 20 0 chr11 88603126 88603175 -33240681 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1260 292 126 45 11 chr11 88603682 88603770 -33240086 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 1 1260 708 213 85 73 chr11 88603804 88603981 -33239875 + B3A SINE B2 4 182 -16 1 1260 1176 41 7 14 chr11 88604157 88604305 -33239551 + B1_Mus2 SINE Alu 1 147 0 1 1260 316 192 87 0 chr11 88604305 88604466 -33239390 - RMER17D LTR ERVK -474 415 241 1 1260 568 257 35 21 chr11 88604476 88604619 -33239237 - RSINE1 SINE B4 -11 154 10 1 1261 278 186 8 0 chr11 88605021 88605082 -33238774 + PB1D10 SINE Alu 15 79 -70 1 1261 501 156 0 0 chr11 88605142 88605238 -33238618 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1261 338 42 21 0 chr11 88605373 88605421 -33238435 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1 1261 192 111 0 0 chr11 88605426 88605462 -33238394 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1261 999 82 7 15 chr11 88605463 88605600 -33238256 - B1_Mm SINE Alu 0 147 12 2 1261 555 219 26 0 chr11 88605725 88605839 -33238017 + PB1D10 SINE Alu 1 117 0 2 1261 590 118 69 0 chr11 88605979 88606081 -33237775 - B1_Mus1 SINE Alu 0 148 40 2 1261 245 250 279 49 chr11 88606084 88606206 -33237650 + MLT1K LTR MaLR 446 595 0 2 1261 202 239 0 0 chr11 88607496 88607542 -33236314 + A-rich Low_complexity Low_complexity 1 46 0 2 1261 789 342 11 3 chr11 88607542 88607824 -33236032 + B4A SINE B4 3 286 -6 2 1261 844 220 5 55 chr11 88607945 88608147 -33235709 - B3A SINE B2 -6 192 1 2 1261 415 185 25 0 chr11 88608247 88608328 -33235528 - PB1 SINE Alu -3 124 42 2 1261 532 260 112 24 chr11 88608393 88608598 -33235258 - L1M5 LINE L1 -1789 4357 4135 2 1261 2030 127 9 64 chr11 88608890 88609235 -33234621 + ORR1A3 LTR MaLR 1 326 0 2 1261 1346 101 21 0 chr11 88609596 88609784 -33234072 - B2_Mm1a SINE B2 0 193 2 2 1261 275 49 0 0 chr11 88609843 88609884 -33233972 - L1Md_T LINE L1 0 6582 6542 2 1261 1001 94 68 53 chr11 88609884 88609918 -33233938 - B2_Mm2 SINE B2 -1 194 159 2 1261 351 0 0 0 chr11 88609918 88609957 -33233899 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2 1261 1001 94 68 53 chr11 88609957 88610112 -33233744 - B2_Mm2 SINE B2 -37 158 2 2 1261 658 282 51 0 chr11 88610135 88610312 -33233544 - B3A SINE B2 -11 187 2 2 1261 257 358 63 31 chr11 88610394 88610521 -33233335 - MIRb SINE MIR -125 143 13 2 1261 1180 165 43 10 chr11 88611089 88611297 -33232559 + B3 SINE B2 1 215 -1 2 1261 639 160 9 0 chr11 88611391 88611497 -33232359 - B1_Mur3 SINE Alu -1 148 42 2 1261 374 0 0 162 chr11 88611500 88611698 -33232158 + (CTCTG)n Simple_repeat Simple_repeat 5 170 0 2 1261 264 204 18 36 chr11 88611699 88611755 -33232101 - B1_Mur4 SINE Alu -90 60 6 2 1261 257 236 54 27 chr11 88611795 88611869 -33231987 - B1F2 SINE Alu -57 92 17 2 1261 331 362 31 8 chr11 88612031 88612159 -33231697 + L2b LINE L2 3244 3374 -1 2 1261 1113 80 27 0 chr11 88612177 88612327 -33231529 + B2_Mm2 SINE B2 36 189 -6 2 1261 260 333 12 12 chr11 88612745 88612827 -33231029 - MLT1A1 LTR MaLR -278 130 49 2 1261 584 337 6 0 chr11 88614266 88614429 -33229427 + RSINE1 SINE B4 1 164 -1 2 1261 198 0 0 0 chr11 88614443 88614465 -33229391 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 2 1261 198 324 56 0 chr11 88614725 88614796 -33229060 - L2c LINE L2 -11 3376 3302 2 1261 405 281 30 4 chr11 88614983 88615087 -33228769 + B1F SINE Alu 2 149 0 2 1261 227 265 225 25 chr11 88616095 88616215 -33227641 + LTR16A1 LTR ERVL 313 456 0 2 1261 455 219 42 145 chr11 88616275 88616344 -33227512 + MER53 DNA hAT 1 67 -126 2 1261 539 259 0 0 chr11 88616344 88616460 -33227396 - PB1D10 SINE Alu 0 117 2 2 1261 455 219 42 145 chr11 88616460 88616580 -33227276 + MER53 DNA hAT 68 176 -17 2 1261 2132 134 83 20 chr11 88616580 88616930 -33226926 - ORR1D1 LTR MaLR -2 372 1 2 1261 455 219 42 145 chr11 88616930 88616953 -33226903 + MER53 DNA hAT 177 192 -1 2 1261 1005 322 14 7 chr11 88617203 88617488 -33226368 + B4A SINE B4 1 287 -5 2 1261 1138 264 114 38 chr11 88617828 88618170 -33225686 + MTE2a LTR MaLR 12 379 0 2 1261 229 264 80 40 chr11 88618174 88618249 -33225607 - MLT1A LTR MaLR -296 78 1 2 1261 745 273 167 8 chr11 88618752 88619003 -33224853 - B4A SINE B4 0 292 2 2 1261 536 254 15 44 chr11 88619019 88619155 -33224701 - ID_B1 SINE B4 0 224 93 2 1261 462 262 53 72 chr11 88619155 88619166 -33224690 - B1F SINE Alu 0 144 1 2 1261 1042 166 64 25 chr11 88619199 88619403 -33224453 - B3 SINE B2 -3 213 2 2 1261 216 111 0 0 chr11 88619615 88619651 -33224205 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1261 183 129 0 0 chr11 88620276 88620307 -33223549 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1261 321 26 0 0 chr11 88620314 88620352 -33223504 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1261 231 36 0 0 chr11 88620352 88620379 -33223477 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1261 755 246 35 20 chr11 88620946 88621145 -33222711 + B4 SINE B4 84 285 -7 2 1261 455 235 60 93 chr11 88621239 88621389 -33222467 - B1F SINE Alu 0 149 5 2 1261 234 291 106 44 chr11 88621322 88621502 -33222354 + YREP_Mm Unknown Unknown 245 435 -1377 2 1261 444 287 79 29 chr11 88621912 88622052 -33221804 + RSINE1 SINE B4 4 150 -15 2 1261 245 29 0 29 chr11 88622062 88622097 -33221759 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1261 2268 151 21 26 chr11 88622254 88622417 -33221439 + ORR1C2 LTR MaLR 6 165 -219 2 1261 201 108 0 0 chr11 88622417 88622454 -33221402 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1261 2268 151 21 26 chr11 88622454 88622671 -33221185 + ORR1C2 LTR MaLR 166 384 0 2 1261 503 175 0 8 chr11 88623042 88623163 -33220693 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1261 736 223 37 31 chr11 88623168 88623330 -33220526 - RSINE1 SINE B4 -1 164 2 2 1261 223 238 16 0 chr11 88623554 88623617 -33220239 + (CCCA)n Simple_repeat Simple_repeat 1 64 0 2 1261 24 32 0 0 chr11 88624529 88624560 -33219296 + AT_rich Low_complexity Low_complexity 1 31 0 2 1261 661 136 133 23 chr11 88624564 88624692 -33219164 - B1_Mus1 SINE Alu -6 142 1 2 1261 364 273 99 9 chr11 88625022 88625133 -33218723 + ID_B1 SINE B4 84 204 -20 2 1261 250 320 53 13 chr11 88625184 88625260 -33218596 + ID_B1 SINE B4 79 157 -67 2 1261 329 192 152 13 chr11 88625201 88625280 -33218576 + PB1D10 SINE Alu 19 108 -9 2 1261 28 29 0 0 chr11 88625397 88625432 -33218424 + AT_rich Low_complexity Low_complexity 1 35 0 2 1261 336 251 0 12 chr11 88625441 88625540 -33218316 + ID4 SINE ID 25 120 -32 2 1261 658 272 71 102 chr11 88625563 88625858 -33217998 - B4 SINE B4 -2 290 5 2 1261 324 51 33 17 chr11 88625870 88625930 -33217926 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 2 1261 927 149 0 0 chr11 88625930 88626071 -33217785 - B1_Mur4 SINE Alu -9 141 1 2 1261 216 0 0 0 chr11 88626352 88626376 -33217480 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1261 30 0 0 0 chr11 88626846 88626876 -33216980 + AT_rich Low_complexity Low_complexity 1 30 0 2 1261 532 171 107 60 chr11 88626876 88627025 -33216831 - RSINE1 SINE B4 -8 157 2 2 1261 225 0 0 0 chr11 88627033 88627058 -33216798 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1261 225 306 50 50 chr11 88627473 88627614 -33216242 + YREP_Mm Unknown Unknown 151 291 -1521 2 1261 1102 222 10 0 chr11 88627500 88627707 -33216149 - ID_B1 SINE B4 -3 221 13 2 1261 536 254 98 0 chr11 88627715 88627837 -33216019 - B1F1 SINE Alu -9 140 7 2 1261 296 281 56 37 chr11 88628037 88628144 -33215712 - MLT1I LTR MaLR -223 188 80 2 1261 422 195 366 24 chr11 88628149 88628354 -33215502 + B4 SINE B4 2 276 -16 2 1261 2035 119 6 55 chr11 88628673 88629019 -33214837 - ORR1A4 LTR MaLR 0 329 1 2 1261 760 206 0 34 chr11 88629253 88629399 -33214457 + B1_Mur2 SINE Alu 3 143 -6 2 1261 648 134 0 0 chr11 88629420 88629554 -33214302 + (GA)n Simple_repeat Simple_repeat 2 135 0 2 1261 231 304 0 0 chr11 88629964 88630020 -33213836 - B1F1 SINE Alu -92 57 2 2 1261 285 28 0 0 chr11 88630141 88630164 -33213692 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1261 1209 61 0 0 chr11 88630164 88630311 -33213545 - B1_Mm SINE Alu 0 147 1 2 1261 285 28 0 0 chr11 88630311 88630323 -33213533 + (T)n Simple_repeat Simple_repeat 1 12 0 2 1261 306 50 0 0 chr11 88630540 88630580 -33213276 + (TTG)n Simple_repeat Simple_repeat 3 42 0 2 1261 462 79 0 0 chr11 88630580 88630643 -33213213 + (TGG)n Simple_repeat Simple_repeat 1 63 0 2 1261 493 252 112 86 chr11 88630646 88630732 -33213124 - RSINE1 SINE B4 0 165 91 2 1261 1902 143 73 35 chr11 88630732 88630906 -33212950 + ORR1C2 LTR MaLR 1 188 -196 2 1261 684 0 0 0 chr11 88630906 88630982 -33212874 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1261 1902 143 73 35 chr11 88630982 88631177 -33212679 + ORR1C2 LTR MaLR 189 384 0 2 1261 493 252 112 86 chr11 88631177 88631242 -33212614 - RSINE1 SINE B4 -75 90 10 2 1261 704 285 72 0 chr11 88631251 88631458 -33212398 - ID_B1 SINE B4 -2 222 1 2 1261 471 167 15 36 chr11 88632473 88632610 -33211246 + CT-rich Low_complexity Low_complexity 4 137 0 2 1261 744 43 0 0 chr11 88632690 88632782 -33211074 + (TCCCC)n Simple_repeat Simple_repeat 2 93 0 2 1261 289 308 29 0 chr11 88632793 88632897 -33210959 - PB1D10 SINE Alu -10 107 1 2 1261 239 288 158 24 chr11 88633054 88633136 -33210720 - B3A SINE B2 -105 93 1 2 1261 383 308 11 11 chr11 88633205 88633297 -33210559 + B1F SINE Alu 2 93 -56 2 1261 333 0 0 0 chr11 88633315 88633352 -33210504 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 2 1261 312 274 104 0 chr11 88633357 88633452 -33210404 - MLT1E LTR MaLR -57 596 491 2 1261 606 269 117 79 chr11 88633452 88633795 -33210061 + ORR1E LTR MaLR 1 356 -3 2 1261 226 326 69 30 chr11 88633999 88634100 -33209756 - MLT1E LTR MaLR -403 157 53 2 1261 2879 73 5 3 chr11 88634289 88634671 -33209185 - L1_Mus4 LINE L1 -2 6634 6252 2 1261 416 327 28 0 chr11 88634781 88634888 -33208968 + RSINE1 SINE B4 2 111 -54 2 1261 417 20 0 0 chr11 88635894 88635944 -33207912 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1261 1144 240 17 43 chr11 88636202 88636502 -33207354 - B4A SINE B4 0 292 1 2 1261 1373 78 5 63 chr11 88636511 88636716 -33207140 - B2_Mm2 SINE B2 0 195 3 2 1261 231 143 0 67 chr11 88636794 88636839 -33207017 - B1_Mus1 SINE Alu -106 42 1 2 1261 800 276 143 15 chr11 88636940 88637212 -33206644 + RCHARR1 DNA MER1_type 191 497 -477 3 1261 252 229 19 2 chr11 88637210 88637276 -33206580 + B4 SINE B4 12 78 -214 3 1261 275 301 0 52 chr11 88637305 88637382 -33206474 + RSINE1 SINE B4 93 165 0 2 1261 1565 210 76 47 chr11 88637394 88637774 -33206082 + RCHARR1 DNA MER1_type 484 874 -100 3 1261 214 186 0 0 chr11 88637816 88637859 -33205997 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1261 303 28 0 0 chr11 88637861 88637897 -33205959 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 3 1261 625 200 7 78 chr11 88637897 88638038 -33205818 - B1_Mur1 SINE Alu -14 135 5 3 1261 641 205 8 8 chr11 88638056 88638174 -33205682 - PB1D7 SINE Alu -1 119 2 3 1261 233 295 71 31 chr11 88638182 88638280 -33205576 - B1F1 SINE Alu 0 149 48 3 1261 361 209 143 0 chr11 88638326 88638417 -33205439 + L1MB5 LINE L1 6051 6154 -20 3 1261 1235 250 58 39 chr11 88638417 88638725 -33205131 + MTE2b LTR MaLR 1 314 -65 3 1261 382 290 45 8 chr11 88639140 88639272 -33204584 + L1ME2 LINE L1 3748 3884 -2262 3 1261 295 172 35 0 chr11 88639300 88639358 -33204498 + MTE2a LTR MaLR 195 254 -125 3 1261 25 51 0 0 chr11 88640009 88640048 -33203808 + AT_rich Low_complexity Low_complexity 1 39 0 3 1261 646 146 391 0 chr11 88640053 88640204 -33203652 + B3 SINE B2 3 212 -4 3 1261 306 310 54 27 chr11 88640255 88640404 -33203452 + L1MC LINE L1 3958 4110 -2036 3 1261 702 130 0 0 chr11 88640404 88640535 -33203321 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 3 1261 387 263 0 0 chr11 88640553 88640629 -33203227 - PB1D10 SINE Alu -6 111 36 3 1261 729 250 78 44 chr11 88640691 88640875 -33202981 + B3 SINE B2 1 187 -29 3 1261 1040 89 7 52 chr11 88640875 88641010 -33202846 - B1_Mus2 SINE Alu 0 147 20 3 1261 960 121 0 0 chr11 88641010 88641183 -33202673 + (GGAA)n Simple_repeat Simple_repeat 4 176 0 3 1261 1040 89 7 52 chr11 88641183 88641201 -33202655 - B1_Mus2 SINE Alu -128 19 1 3 1261 729 250 78 44 chr11 88641201 88641221 -33202635 + B3 SINE B2 188 212 -4 3 1261 1417 28 0 11 chr11 88641223 88641403 -33202453 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 3 1261 201 175 0 0 chr11 88641405 88641445 -33202411 + GA-rich Low_complexity Low_complexity 1 40 0 3 1261 323 247 0 83 chr11 88641528 88641612 -33202244 - B4A SINE B4 0 292 216 3 1261 577 183 0 34 chr11 88641618 88641737 -33202119 + B1_Mus1 SINE Alu 25 139 -9 3 1261 654 13 0 0 chr11 88641767 88641842 -33202014 + (TC)n Simple_repeat Simple_repeat 1 75 0 3 1261 207 0 0 0 chr11 88641842 88641865 -33201991 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1261 621 230 54 7 chr11 88641870 88642019 -33201837 - B3A SINE B2 -39 159 4 3 1261 919 263 20 73 chr11 88642019 88642263 -33201593 - B4A SINE B4 -60 232 2 3 1261 391 253 138 5 chr11 88642273 88642468 -33201388 + L1ME2 LINE L1 4109 4329 -1817 3 1261 317 329 77 42 chr11 88642469 88642612 -33201244 + B1F SINE Alu 1 148 -1 3 1261 479 274 246 12 chr11 88642616 88642860 -33200996 + L1ME2 LINE L1 4323 4623 -1523 3 1261 487 142 8 57 chr11 88642860 88643112 -33200744 + (TG)n Simple_repeat Simple_repeat 1 239 0 3 1261 653 278 118 42 chr11 88643116 88643379 -33200477 - B4A SINE B4 0 292 10 3 1261 233 257 13 26 chr11 88643381 88643457 -33200399 + L1ME2 LINE L1 4609 4683 -1463 3 1261 646 295 89 12 chr11 88643619 88643955 -33199901 + L1ME2 LINE L1 4939 5300 -846 3 1261 446 317 49 0 chr11 88643957 88644099 -33199757 + B1F SINE Alu 1 149 0 3 1261 215 156 0 0 chr11 88644106 88644138 -33199718 + ID4_ SINE ID 11 42 -41 3 1261 1822 180 35 66 chr11 88644196 88644619 -33199237 + MTD LTR MaLR 2 411 -8 3 1261 322 293 170 6 chr11 88644623 88644788 -33199068 + L1ME2 LINE L1 5618 5809 -353 3 1261 950 156 204 0 chr11 88644788 88644974 -33198882 + URR1A DNA MER1_type 1 224 -2 3 1261 517 298 32 32 chr11 88645058 88645245 -33198611 - MLT1A LTR MaLR -180 194 8 3 1261 1090 171 29 10 chr11 88645350 88645557 -33198299 + B3 SINE B2 1 211 -5 3 1261 1154 42 14 0 chr11 88645586 88645728 -33198128 + B1_Mus2 SINE Alu 1 144 -3 3 1261 516 32 0 0 chr11 88645728 88645790 -33198066 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 1261 186 43 0 0 chr11 88645790 88645813 -33198043 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 3 1261 900 207 104 0 chr11 88645827 88646020 -33197836 + B3 SINE B2 1 213 -3 3 1261 319 304 60 7 chr11 88646048 88646197 -33197659 + L1ME2 LINE L1 5951 6107 -57 3 1261 387 307 0 0 chr11 88646303 88646404 -33197452 - L1M5 LINE L1 -331 5793 5693 3 1261 1032 237 77 56 chr11 88646455 88646741 -33197115 + B4 SINE B4 1 292 0 3 1261 905 245 50 9 chr11 88646791 88647013 -33196843 + ORR1E LTR MaLR 124 354 -5 3 1261 269 252 11 16 chr11 88647067 88647145 -33196711 + PB1D10 SINE Alu 24 104 -45 3 1261 703 296 54 10 chr11 88647362 88647567 -33196289 - MER44B DNA MER2_type -265 285 72 3 1261 186 184 0 0 chr11 88647668 88647693 -33196163 + T-rich Low_complexity Low_complexity 25 49 0 3 1261 1204 55 0 14 chr11 88647693 88647841 -33196015 - B1_Mus1 SINE Alu -2 146 1 3 1261 186 184 0 0 chr11 88647841 88647864 -33195992 + T-rich Low_complexity Low_complexity 2 24 0 3 1261 579 300 0 35 chr11 88647910 88648055 -33195801 - RSINE1 SINE B4 -23 142 3 3 1261 21 0 0 0 chr11 88648062 88648083 -33195773 + AT_rich Low_complexity Low_complexity 1 21 0 3 1261 598 165 139 0 chr11 88648084 88648199 -33195657 - B1_Mur1 SINE Alu -6 143 13 3 1261 317 271 70 12 chr11 88648304 88648390 -33195466 + BC1_Mm scRNA scRNA 1 91 -61 3 1261 1100 91 0 0 chr11 88648744 88648887 -33194969 - B2_Mm2 SINE B2 -52 143 1 3 1261 249 247 258 0 chr11 88649002 88649095 -33194761 - PB1D10 SINE Alu 0 117 1 3 1261 314 270 0 0 chr11 88649137 88649211 -33194645 - ID4 SINE ID -9 74 1 3 1261 200 132 26 26 chr11 88650496 88650535 -33193321 + GA-rich Low_complexity Low_complexity 1 39 0 3 1261 2510 80 3 3 chr11 88650647 88650974 -33192882 + ORR1A2 LTR MaLR 1 327 0 3 1261 338 379 46 29 chr11 88650981 88651241 -33192615 + HAL1 LINE L1 1528 1793 -714 3 1261 1112 224 151 12 chr11 88651241 88651411 -33192445 - ORR1D2 LTR MaLR 0 370 161 3 1261 261 0 0 0 chr11 88651411 88651440 -33192416 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1261 1112 224 151 12 chr11 88651440 88651594 -33192262 - ORR1D2 LTR MaLR -210 160 2 3 1261 338 379 46 29 chr11 88651594 88651613 -33192243 + HAL1 LINE L1 1794 1812 -695 3 1261 198 0 0 0 chr11 88651801 88651823 -33192033 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1261 669 102 71 0 chr11 88651823 88651921 -33191935 - B2_Mm2 SINE B2 -89 106 2 3 1261 459 0 0 0 chr11 88651954 88652005 -33191851 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1261 416 315 8 38 chr11 88652006 88652138 -33191718 + ID_B1 SINE B4 95 222 -2 3 1261 501 257 60 13 chr11 88652201 88652351 -33191505 + RSINE1 SINE B4 4 160 -5 3 1261 704 178 45 19 chr11 88652512 88652667 -33191189 + RSINE1 SINE B4 4 162 -3 3 1261 531 345 96 0 chr11 88652757 88653070 -33190786 - MER2 DNA MER2_type -2 343 1 3 1261 564 237 137 90 chr11 88653455 88653733 -33190123 + B4A SINE B4 2 292 0 3 1261 237 138 0 49 chr11 88654098 88654159 -33189697 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 3 1261 1085 120 0 7 chr11 88654162 88654313 -33189543 - B1_Mur4 SINE Alu 0 150 1 3 1261 262 284 80 64 chr11 88654674 88654858 -33188998 - MIRc SINE MIR -42 226 24 3 1261 309 255 259 18 chr11 88654885 88654997 -33188859 - MIRb SINE MIR -118 150 12 3 1261 431 262 299 0 chr11 88655160 88655324 -33188532 - ID_B1 SINE B4 -3 221 9 3 1261 568 287 123 39 chr11 88655392 88655700 -33188156 - L1MB3 LINE L1 -10 6173 5840 3 1261 631 261 124 26 chr11 88655775 88655968 -33187888 - B4 SINE B4 -79 213 2 3 1261 235 171 24 0 chr11 88656149 88656190 -33187666 - B3 SINE B2 -21 195 154 3 1261 653 204 91 0 chr11 88656238 88656370 -33187486 + B1_Mur4 SINE Alu 2 145 -5 3 1261 680 23 12 0 chr11 88656372 88656458 -33187398 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 3 1261 682 234 113 38 chr11 88656479 88656745 -33187111 + L1MB5 LINE L1 5308 5593 -591 3 1261 263 121 17 0 chr11 88656747 88656805 -33187051 + (TTTTTG)n Simple_repeat Simple_repeat 4 62 0 3 1261 1221 35 7 0 chr11 88656806 88656950 -33186906 - B1_Mus2 SINE Alu -1 146 2 3 1261 486 228 38 81 chr11 88656986 88657172 -33186684 + L1MB5 LINE L1 5648 5825 -349 3 1261 433 264 101 0 chr11 88657202 88657350 -33186506 + L1MC1 LINE L1 5913 6075 -258 3 1261 370 262 158 53 chr11 88657392 88657525 -33186331 + B1_Mur1 SINE Alu 2 148 -1 3 1261 247 240 26 13 chr11 88657526 88657602 -33186254 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1261 366 306 64 27 chr11 88657602 88657790 -33186066 + L1MC1 LINE L1 6108 6302 -31 3 1261 598 286 48 0 chr11 88657825 88657972 -33185884 - B3 SINE B2 -11 205 52 3 1261 1678 274 34 18 chr11 88657974 88658472 -33185384 + Lx6 LINE L1 6571 7433 -27 3 1261 185 0 0 39 chr11 88658486 88658512 -33185344 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1261 339 310 87 0 chr11 88659098 88659213 -33184643 + L1MB5 LINE L1 5815 5939 -245 3 1261 390 211 36 27 chr11 88659269 88659381 -33184475 - PB1D10 SINE Alu -2 115 3 3 1261 186 118 0 0 chr11 88659451 88659485 -33184371 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1261 1152 151 17 6 chr11 88659937 88660117 -33183739 + B2_Mm2 SINE B2 1 182 -13 3 1261 1217 103 32 21 chr11 88660136 88660324 -33183532 + B2_Mm2 SINE B2 2 191 -4 3 1261 353 287 0 44 chr11 88660346 88660437 -33183419 + RSINE1 SINE B4 11 97 -68 3 1261 271 266 25 0 chr11 88661284 88661363 -33182493 + ID4_ SINE ID 2 82 -1 3 1261 476 265 67 13 chr11 88661397 88661546 -33182310 - RSINE1 SINE B4 -6 159 3 3 1261 637 254 28 14 chr11 88661578 88661722 -33182134 - B1F SINE Alu -1 148 3 3 1261 1046 135 0 7 chr11 88662025 88662174 -33181682 - B1_Mur4 SINE Alu 0 150 3 3 1261 327 233 0 0 chr11 88662219 88662322 -33181534 + CT-rich Low_complexity Low_complexity 4 106 0 3 1261 745 218 0 13 chr11 88662682 88662831 -33181025 - B1_Mur1 SINE Alu -2 147 1 3 1261 682 191 94 8 chr11 88662846 88662973 -33180883 - ID_B1 SINE B4 -6 218 81 3 1261 1218 262 153 11 chr11 88663110 88663469 -33180387 + MTD LTR MaLR 10 419 0 3 1261 247 318 0 54 chr11 88664441 88664534 -33179322 - RLTR25A LTR ERVK -495 608 521 3 1261 616 144 1 55 chr11 88664451 88664587 -33179269 - B1_Mus1 SINE Alu -21 128 7 4 1261 1235 27 7 7 chr11 88665454 88665601 -33178255 + B1_Mus2 SINE Alu 1 147 0 4 1261 251 351 107 0 chr11 88665719 88665850 -33178006 + MER21B LTR ERV1 608 752 -111 4 1261 309 273 157 11 chr11 88666013 88666102 -33177754 - RSINE1 SINE B4 -61 104 3 4 1261 762 253 65 0 chr11 88666285 88666455 -33177401 - B3A SINE B2 -16 182 2 4 1261 348 297 127 46 chr11 88666459 88666632 -33177224 - L1MD LINE L1 -1884 4262 4076 4 1261 865 112 7 36 chr11 88666848 88666987 -33176869 + B1_Mur3 SINE Alu 9 143 -6 4 1261 1128 128 0 0 chr11 88666993 88667172 -33176684 + (GAA)n Simple_repeat Simple_repeat 2 180 0 4 1261 896 164 12 0 chr11 88667173 88667344 -33176512 + GA-rich Low_complexity Low_complexity 1 173 0 4 1261 255 260 13 40 chr11 88667400 88667476 -33176380 + RSINE1 SINE B4 91 164 -1 4 1261 1245 166 136 56 chr11 88667594 88667933 -33175923 + ORR1D1 LTR MaLR 1 366 -8 4 1261 255 230 0 51 chr11 88667970 88668048 -33175808 + L1M2 LINE L1 4171 4244 -1899 4 1261 274 301 0 0 chr11 88668049 88668122 -33175734 + ID4 SINE ID 2 74 -9 4 1261 834 229 0 0 chr11 88668271 88668424 -33175432 + B3 SINE B2 3 155 -61 4 1261 254 100 0 0 chr11 88668418 88668458 -33175398 - B2_Mm2 SINE B2 -155 40 1 4 1261 285 29 0 0 chr11 88668551 88668585 -33175271 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 1261 539 139 270 27 chr11 88668602 88668713 -33175143 - B1_Mus1 SINE Alu -10 138 1 4 1261 671 210 98 39 chr11 88668736 88668939 -33174917 - B3 SINE B2 -1 215 1 4 1261 22 0 0 0 chr11 88668949 88668971 -33174885 + AT_rich Low_complexity Low_complexity 1 22 0 4 1261 423 291 40 54 chr11 88669966 88670115 -33173741 + B4A SINE B4 146 292 0 4 1261 291 28 0 0 chr11 88670145 88670181 -33173675 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1261 617 249 66 11 chr11 88670780 88670950 -33172906 + B3A SINE B2 2 181 -17 4 1261 261 128 0 0 chr11 88670950 88670997 -33172859 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1261 617 249 66 11 chr11 88670997 88671009 -33172847 + B3A SINE B2 182 193 -5 4 1261 547 206 10 0 chr11 88671079 88671181 -33172675 + PB1D9 SINE Alu 13 115 -5 4 1261 662 96 89 0 chr11 88671218 88671353 -33172503 + GA-rich Low_complexity Low_complexity 4 150 0 4 1261 292 234 0 0 chr11 88671392 88671456 -33172400 + ID4_ SINE ID 9 72 -11 4 1261 206 296 59 39 chr11 88672102 88672204 -33171652 + MER5B DNA MER1_type 1 104 -74 4 1261 599 0 14 0 chr11 88672220 88672291 -33171565 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1261 674 192 31 0 chr11 88672435 88672565 -33171291 + RSINE1 SINE B4 11 144 -21 4 1261 21 57 0 0 chr11 88672565 88672600 -33171256 + AT_rich Low_complexity Low_complexity 1 35 0 4 1261 481 219 8 26 chr11 88672605 88672722 -33171134 + PB1D9 SINE Alu 1 115 -5 4 1261 264 59 0 0 chr11 88672723 88672757 -33171099 + (AGGGGG)n Simple_repeat Simple_repeat 1 34 0 4 1261 422 275 9 0 chr11 88672829 88672938 -33170918 - ID_B1 SINE B4 -2 222 113 4 1261 671 0 13 0 chr11 88672938 88673017 -33170839 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1261 293 221 39 13 chr11 88673048 88673126 -33170730 + PB1D7 SINE Alu 40 119 -1 4 1261 828 159 204 0 chr11 88673156 88673332 -33170524 + B3 SINE B2 5 216 0 4 1261 358 299 83 61 chr11 88673977 88674205 -33169651 + L1ME3 LINE L1 5859 6091 -71 4 1261 350 196 11 0 chr11 88674212 88674304 -33169552 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1261 674 260 70 24 chr11 88674342 88674525 -33169331 + B4A SINE B4 4 196 -96 4 1261 460 250 102 57 chr11 88674525 88674682 -33169174 + RSINE1 SINE B4 2 165 0 4 1261 289 288 14 0 chr11 88674700 88674773 -33169083 + B4A SINE B4 219 292 0 4 1261 1149 68 0 0 chr11 88674827 88674975 -33168881 - B1_Mus1 SINE Alu 0 148 1 4 1261 300 137 0 0 chr11 88675898 88675949 -33167907 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1261 280 297 35 26 chr11 88676368 88676482 -33167374 - MIRm SINE MIR -114 162 48 4 1261 213 39 0 0 chr11 88677071 88677097 -33166759 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1261 387 0 0 0 chr11 88677157 88677200 -33166656 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 1261 899 96 29 0 chr11 88677214 88677350 -33166506 - B2_Mm2 SINE B2 -55 140 1 4 1261 328 314 76 35 chr11 88677384 88677404 -33166452 - B4 SINE B4 -76 216 145 4 1261 559 211 0 19 chr11 88677404 88677510 -33166346 - B1_Mur4 SINE Alu -46 104 1 4 1261 473 264 183 0 chr11 88677510 88677704 -33166152 - B4A SINE B4 -61 231 2 4 1261 981 134 194 6 chr11 88677766 88677946 -33165910 + B3 SINE B2 2 215 -1 4 1261 1213 111 0 6 chr11 88677967 88678149 -33165707 + B2_Mm2 SINE B2 1 181 -14 4 1261 279 0 0 0 chr11 88678396 88678427 -33165429 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1261 529 196 153 42 chr11 88678427 88678557 -33165299 - MTEa LTR MaLR -21 358 208 4 1261 1477 166 231 29 chr11 88678557 88678904 -33164952 - MTC LTR MaLR 0 421 5 4 1261 529 196 153 42 chr11 88678904 88678917 -33164939 - MTEa LTR MaLR -172 207 199 4 1261 384 50 0 118 chr11 88678917 88678972 -33164884 + B2_Mm2 SINE B2 3 62 -133 4 1261 245 284 40 0 chr11 88679488 88679562 -33164294 - L1MD3 LINE L1 -190 7805 7729 4 1261 247 230 105 26 chr11 88679656 88679732 -33164124 - ID2 SINE ID 0 83 2 4 1261 1613 21 0 0 chr11 88679830 88680019 -33163837 - B2_Mm1a SINE B2 -4 189 1 4 1261 1405 65 11 0 chr11 88680022 88680208 -33163648 - B2_Mm1t SINE B2 -5 188 1 4 1261 400 283 0 0 chr11 88680239 88680331 -33163525 + B1_Mur2 SINE Alu 3 94 -55 4 1261 2153 158 4 110 chr11 88680397 88680479 -33163377 + MTC LTR MaLR 1 66 -355 4 1261 1026 46 8 0 chr11 88680479 88680609 -33163247 + B1_Mus1 SINE Alu 2 132 -16 4 1261 2153 158 4 110 chr11 88680609 88680988 -33162868 + MTC LTR MaLR 67 413 -8 4 1261 419 202 0 0 chr11 88681045 88681124 -33162732 + ID_B1 SINE B4 91 169 -55 4 1261 342 267 44 0 chr11 88681124 88681135 -33162721 + B1F2 SINE Alu 10 103 -46 4 1261 446 207 162 0 chr11 88681156 88681267 -33162589 + B1F2 SINE Alu 2 130 -19 4 1261 232 239 34 8 chr11 88681276 88681394 -33162462 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 1261 206 121 0 0 chr11 88681433 88681466 -33162390 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1261 266 196 19 19 chr11 88682011 88682115 -33161741 + C-rich Low_complexity Low_complexity 2 105 0 4 1261 214 283 0 0 chr11 88684233 88684293 -33159563 + C-rich Low_complexity Low_complexity 1 60 0 4 1261 291 297 239 0 chr11 88684354 88684492 -33159364 - MER5A DNA MER1_type 0 189 19 4 1261 465 305 32 38 chr11 88684972 88685129 -33158727 + ID_B1 SINE B4 5 160 -64 4 1261 786 141 74 0 chr11 88685130 88685265 -33158591 + B1_Mur3 SINE Alu 5 149 0 4 1261 222 293 0 17 chr11 88685265 88685324 -33158532 + GA-rich Low_complexity Low_complexity 3 60 0 4 1261 279 169 105 105 chr11 88685376 88685462 -33158394 + ID_B1 SINE B4 137 222 -2 4 1261 198 333 0 18 chr11 88685541 88685596 -33158260 - MER5A DNA MER1_type -50 139 86 4 1261 807 226 5 47 chr11 88685784 88685998 -33157858 + B3 SINE B2 1 205 -11 4 1261 531 318 50 15 chr11 88686020 88686218 -33157638 + ID_B1 SINE B4 1 205 -19 4 1261 600 206 64 0 chr11 88686413 88686554 -33157302 - B3A SINE B2 -31 167 18 4 1261 225 232 143 14 chr11 88686550 88686620 -33157236 - B4 SINE B4 -201 91 13 4 1261 619 289 44 6 chr11 88686670 88686851 -33157005 - B3A SINE B2 -10 188 1 4 1261 210 303 111 32 chr11 88687821 88687947 -33155909 - B4A SINE B4 -118 174 39 4 1261 1579 189 79 11 chr11 88688102 88688456 -33155400 + ORR1C1 LTR MaLR 1 378 0 4 1261 268 258 231 0 chr11 88689000 88689106 -33154750 + B1F2 SINE Alu 16 145 -4 4 1261 214 286 38 38 chr11 88689149 88689229 -33154627 - RSINE1 SINE B4 -12 153 74 4 1261 207 0 0 0 chr11 88689241 88689264 -33154592 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1261 1253 64 0 6 chr11 88689313 88689326 -33154530 - B2_Mm1a SINE B2 -20 173 161 4 1261 207 0 0 0 chr11 88689326 88689349 -33154507 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1261 1253 64 0 6 chr11 88689349 88689508 -33154348 - B2_Mm1a SINE B2 -33 160 2 4 1261 233 264 19 117 chr11 88689508 88689593 -33154263 - RSINE1 SINE B4 -80 85 11 4 1261 233 211 113 0 chr11 88689609 88689680 -33154176 - PB1D10 SINE Alu -7 110 32 4 1261 223 167 0 40 chr11 88689899 88689915 -33153941 + T-rich Low_complexity Low_complexity 34 48 0 4 1261 795 142 117 0 chr11 88689915 88690077 -33153779 + B2_Mm2 SINE B2 1 181 -14 4 1261 223 167 0 40 chr11 88690077 88690110 -33153746 + T-rich Low_complexity Low_complexity 1 33 0 4 1261 221 173 211 0 chr11 88690211 88690263 -33153593 - B2_Mm2 SINE B2 -76 119 57 4 1261 3286 35 2 0 chr11 88690538 88690933 -33152923 - MTA_Mm LTR MaLR 0 396 1 4 1261 1279 81 48 5 chr11 88690973 88691159 -33152697 + B2_Mm2 SINE B2 2 195 0 4 1261 326 247 43 0 chr11 88693735 88693828 -33150028 - PB1D10 SINE Alu -8 109 13 4 1261 398 20 20 0 chr11 88694042 88694093 -33149763 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1261 378 0 0 0 chr11 88694177 88694219 -33149637 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1261 207 0 0 0 chr11 88694270 88694293 -33149563 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 1261 585 0 0 0 chr11 88694293 88694357 -33149499 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1261 460 263 21 57 chr11 88695254 88695395 -33148461 - B1F1 SINE Alu -13 136 1 4 1261 294 318 75 0 chr11 88695791 88695898 -33147958 + MER5A DNA MER1_type 30 144 -45 5 1261 449 323 143 16 chr11 88696857 88697044 -33146812 - B4 SINE B4 -8 284 77 5 1261 786 75 0 0 chr11 88697044 88697150 -33146706 + (TC)n Simple_repeat Simple_repeat 1 106 0 5 1261 449 323 143 16 chr11 88697150 88697214 -33146642 - B4 SINE B4 -216 76 2 5 1261 919 231 19 5 chr11 88697831 88698040 -33145816 + B3 SINE B2 5 216 0 5 1261 354 228 127 0 chr11 88698821 88698900 -33144956 - B3 SINE B2 -112 104 16 5 1261 200 277 192 0 chr11 88701173 88701303 -33142553 - MIR SINE MIR -42 220 66 5 1261 216 0 0 0 chr11 88702141 88702165 -33141691 + (CCTG)n Simple_repeat Simple_repeat 4 27 0 5 1261 249 159 0 0 chr11 88703372 88703416 -33140440 + GA-rich Low_complexity Low_complexity 3 46 0 5 1261 1084 82 0 0 chr11 88703601 88703748 -33140108 + B1_Mus1 SINE Alu 2 148 0 5 1261 239 203 26 26 chr11 88704351 88704404 -33139452 + T-rich Low_complexity Low_complexity 22 76 0 5 1261 1222 21 0 0 chr11 88704404 88704548 -33139308 - B1_Mm SINE Alu 0 147 4 5 1261 239 203 26 26 chr11 88704548 88704570 -33139286 + T-rich Low_complexity Low_complexity 1 21 0 5 1261 518 252 69 0 chr11 88707236 88707367 -33136489 + B1_Mur1 SINE Alu 2 141 -8 5 1261 669 201 124 14 chr11 88708523 88708712 -33135144 - B3 SINE B2 -25 191 1 5 1261 324 273 10 111 chr11 88708733 88708832 -33135024 - PB1D10 SINE Alu -20 97 9 5 1261 283 256 122 46 chr11 88708839 88708970 -33134886 + MER5B DNA MER1_type 37 177 -1 5 1261 234 91 0 0 chr11 88710464 88710497 -33133359 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1261 696 12 0 0 chr11 88711666 88711747 -33132109 + (TC)n Simple_repeat Simple_repeat 1 81 0 5 1261 252 59 0 0 chr11 88711747 88711780 -33132076 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1261 1188 41 0 0 chr11 88711838 88711985 -33131871 + B1_Mus2 SINE Alu 1 147 0 5 1261 270 0 0 0 chr11 88711985 88712015 -33131841 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1261 848 188 57 43 chr11 88712015 88712226 -33131630 + B3 SINE B2 2 215 -1 5 1261 361 239 101 68 chr11 88712456 88712604 -33131252 + MER3 DNA MER1_type 53 205 -4 5 1261 927 230 10 10 chr11 88713250 88713452 -33130404 + B3 SINE B2 11 212 -4 5 1261 642 149 132 0 chr11 88713677 88713798 -33130058 - B1_Mus2 SINE Alu -5 142 6 5 1261 288 294 0 12 chr11 88714724 88714810 -33129046 + HAL1 LINE L1 1663 1747 -760 5 1261 1165 166 90 10 chr11 88714815 88715248 -33128608 + RLTR12B LTR ERVK 1 496 -32 5 1261 583 235 50 74 chr11 88715777 88715971 -33127885 + B3A SINE B2 10 214 -2 5 1261 950 134 206 6 chr11 88715977 88716157 -33127699 + B3 SINE B2 1 216 0 5 1261 275 209 29 15 chr11 88716183 88716198 -33127658 + polypurine Low_complexity Low_complexity 4 17 0 5 1261 1160 54 0 0 chr11 88716198 88716346 -33127510 + B1_Mus1 SINE Alu 1 148 0 5 1261 275 209 29 15 chr11 88716346 88716398 -33127458 + polypurine Low_complexity Low_complexity 18 71 0 5 1261 415 259 0 61 chr11 88716644 88716759 -33127097 - PB1D10 SINE Alu -8 109 2 5 1261 218 226 113 0 chr11 88718145 88718198 -33125658 + ID4_ SINE ID 2 60 -23 5 1261 417 20 0 0 chr11 88718198 88718248 -33125608 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1261 184 250 132 0 chr11 88719253 88719321 -33124535 + MIRb SINE MIR 119 195 -73 5 1261 315 0 0 0 chr11 88719359 88719394 -33124462 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1261 1193 48 0 0 chr11 88719394 88719541 -33124315 - B1_Mus2 SINE Alu 0 147 1 5 1261 295 21 20 41 chr11 88719766 88719778 -33124078 + (CAAAA)n Simple_repeat Simple_repeat 2 13 0 5 1261 1150 48 7 0 chr11 88719778 88719924 -33123932 + B1_Mus2 SINE Alu 1 147 0 5 1261 295 21 20 41 chr11 88719924 88719960 -33123896 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 5 1261 419 289 39 0 chr11 88719973 88720077 -33123779 + PB1 SINE Alu 6 113 -14 5 1261 240 35 0 0 chr11 88720078 88720107 -33123749 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 5 1261 312 115 66 0 chr11 88720218 88720279 -33123577 + B2_Mm1a SINE B2 115 179 -14 5 1261 1200 41 0 0 chr11 88720402 88720548 -33123308 + B1_Mus2 SINE Alu 1 146 -1 5 1261 2746 131 35 79 chr11 88720573 88721145 -33122711 + RMER15 LTR ERVL 29 575 0 5 1261 252 273 186 29 chr11 88721280 88721382 -33122474 + B1F SINE Alu 17 134 -15 5 1261 359 255 30 10 chr11 88722477 88722576 -33121280 + PB1D10 SINE Alu 9 109 -8 5 1261 1644 46 18 0 chr11 88723205 88723423 -33120433 - L1_Mus3 LINE L1 -6 6632 6411 5 1261 489 167 77 52 chr11 88726644 88726780 -33117076 - ID_B1 SINE B4 -46 246 103 5 1261 231 88 0 0 chr11 88726944 88726978 -33116878 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1261 1287 34 0 0 chr11 88726978 88727125 -33116731 - B1_Mus2 SINE Alu 0 147 1 5 1261 314 194 123 14 chr11 88727141 88727214 -33116642 + PB1D7 SINE Alu 31 111 -9 5 1261 810 275 18 41 chr11 88727228 88727448 -33116408 - B3 SINE B2 -1 215 1 5 1261 1161 141 11 0 chr11 88727656 88727833 -33116023 + B2_Mm1t SINE B2 1 179 -14 5 1261 402 94 398 20 chr11 88727861 88727959 -33115897 + B2_Mm2 SINE B2 47 181 -14 5 1261 649 43 33 0 chr11 88727965 88728057 -33115799 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 1261 1216 61 0 0 chr11 88728390 88728537 -33115319 - B1_Mus2 SINE Alu 0 147 1 5 1261 362 222 61 82 chr11 88728670 88728768 -33115088 + B4A SINE B4 1 96 -196 5 1261 1173 34 0 75 chr11 88728769 88728928 -33114928 + B1_Mm SINE Alu 1 147 0 5 1261 321 258 144 0 chr11 88728949 88729046 -33114810 + RSINE1 SINE B4 8 118 -47 5 1261 1146 69 3 7 chr11 88729059 88729355 -33114501 + (TTC)n Simple_repeat Simple_repeat 1 294 0 5 1261 463 279 22 37 chr11 88729359 88729493 -33114363 - ID_B1 SINE B4 -92 132 1 5 1261 1165 118 109 38 chr11 88730149 88730360 -33113496 - URR1A DNA MER1_type 0 226 1 5 1261 391 243 0 13 chr11 88730490 88730565 -33113291 + BC1_Mm scRNA scRNA 14 87 -65 5 1261 461 273 102 46 chr11 88730576 88730772 -33113084 + MLT1C LTR MaLR 261 467 0 5 1261 791 232 39 83 chr11 88731620 88731764 -33112092 + ID_B1 SINE B4 3 143 -81 5 1261 675 218 14 7 chr11 88731764 88731912 -33111944 + B1_Mur4 SINE Alu 1 149 -1 5 1261 791 232 39 83 chr11 88731912 88731997 -33111859 + ID_B1 SINE B4 144 222 -2 5 1261 334 237 53 21 chr11 88732262 88732357 -33111499 + RMER2 LTR ERV1 470 567 0 5 1261 523 230 0 42 chr11 88732365 88732483 -33111373 - RSINE1 SINE B4 -37 128 16 5 1261 864 239 26 22 chr11 88732508 88732739 -33111117 - B4A SINE B4 -52 240 9 5 1261 1127 68 0 39 chr11 88732812 88732965 -33110891 + B1_Mm SINE Alu 1 147 0 5 1261 189 74 0 0 chr11 88732965 88732992 -33110864 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1261 244 333 0 14 chr11 88733072 88733145 -33110711 + MER2 DNA MER2_type 1 72 -273 5 1261 254 268 0 99 chr11 88733145 88733236 -33110620 + PB1D10 SINE Alu 15 96 -21 5 1261 725 193 104 0 chr11 88733243 88733378 -33110478 + B1_Mur2 SINE Alu 1 149 0 5 1261 554 256 0 35 chr11 88733389 88733531 -33110325 + MER2 DNA MER2_type 91 227 -118 5 1261 306 288 32 68 chr11 88733674 88733924 -33109932 + L1M5 LINE L1 5548 5788 -336 5 1261 244 246 123 0 chr11 88734185 88734250 -33109606 + ID4 SINE ID 1 73 -10 5 1261 212 163 0 0 chr11 88734284 88734327 -33109529 + A-rich Low_complexity Low_complexity 1 43 0 5 1261 598 218 0 0 chr11 88734333 88734443 -33109413 + PB1D9 SINE Alu 11 120 0 5 1261 781 275 16 0 chr11 88734458 88734651 -33109205 + ID_B1 SINE B4 9 204 -20 5 1261 1328 80 17 0 chr11 88735343 88735519 -33108337 - B2_Mm1t SINE B2 -14 179 1 5 1261 414 229 36 0 chr11 88735563 88735646 -33108210 + BC1_Mm scRNA scRNA 2 87 -65 5 157 404 176 0 56 chr11 88735702 88735774 -33108082 + ID4_ SINE ID 3 70 -13 5 1262 1414 63 6 0 chr11 88735798 88735972 -33107884 + B2_Mm1a SINE B2 1 175 -18 5 1262 309 290 32 0 chr11 88735982 88736075 -33107781 + GA-rich Low_complexity Low_complexity 5 100 0 5 1262 239 200 0 39 chr11 88736139 88736191 -33107665 + ID_B1 SINE B4 121 170 -54 5 1262 222 253 78 26 chr11 88736191 88736216 -33107640 + PB1D9 SINE Alu 40 120 0 5 1262 864 76 25 0 chr11 88736502 88736621 -33107235 - B2_Mm2 SINE B2 -1 194 73 5 1262 1309 105 5 10 chr11 88736621 88736814 -33107042 + B2_Mm2 SINE B2 4 195 0 5 1262 376 204 177 31 chr11 88736826 88736922 -33106934 + PB1D10 SINE Alu 1 110 -7 5 1262 891 254 86 0 chr11 88736929 88737126 -33106730 + ID_B1 SINE B4 6 219 -5 5 1262 1157 168 0 20 chr11 88737134 88737329 -33106527 + B3 SINE B2 2 192 -24 5 1262 349 287 0 16 chr11 88737818 88737942 -33105914 + CT-rich Low_complexity Low_complexity 2 123 0 5 1262 1157 112 23 6 chr11 88737948 88738119 -33105737 - B2_Mm2 SINE B2 -9 186 13 5 1262 3156 158 87 17 chr11 88738119 88738719 -33105137 - RLTR26 LTR ERVK 0 642 1 5 1262 203 106 43 0 chr11 88738814 88738861 -33104995 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 5 1262 786 161 6 95 chr11 88738900 88739079 -33104777 + RLTR11A LTR ERVK 170 332 -196 5 1262 1243 55 0 0 chr11 88739079 88739225 -33104631 + B1_Mm SINE Alu 2 147 0 5 1262 279 0 0 0 chr11 88739225 88739256 -33104600 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1262 1168 145 24 0 chr11 88739256 88739463 -33104393 + RLTR11A LTR ERVK 317 528 0 5 1262 935 214 0 0 chr11 88739463 88739645 -33104211 - Lx8 LINE L1 -277 7196 7015 6 1262 2121 257 82 14 chr11 88739754 88740362 -33103494 - Lx8 LINE L1 -428 7045 6399 6 1262 1144 114 40 6 chr11 88740362 88740392 -33103464 - B2_Mm2 SINE B2 -12 183 154 6 1262 330 26 0 0 chr11 88740392 88740431 -33103425 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1262 1144 114 40 6 chr11 88740431 88740576 -33103280 - B2_Mm2 SINE B2 -42 153 2 6 1262 2121 257 82 14 chr11 88740576 88740622 -33103234 - Lx8 LINE L1 -1075 6398 6346 6 1262 406 307 0 17 chr11 88740616 88740732 -33103124 + Lx8 LINE L1 6194 6307 -1166 6 1262 1014 123 0 33 chr11 88740803 88740817 -33103039 - B1_Mus2 SINE Alu 0 147 135 6 1262 189 0 0 0 chr11 88740817 88740838 -33103018 + (TTG)n Simple_repeat Simple_repeat 2 22 0 6 1262 1014 123 0 33 chr11 88740838 88740974 -33102882 - B1_Mus2 SINE Alu -13 134 2 6 1262 387 0 0 0 chr11 88740974 88741017 -33102839 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1262 524 304 0 15 chr11 88741019 88741156 -33102700 - B1_Mur1 SINE Alu -13 136 2 6 1262 1136 75 0 45 chr11 88741335 88741489 -33102367 - B1_Mus2 SINE Alu 0 147 1 6 1262 439 90 13 13 chr11 88741513 88741592 -33102264 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1262 480 231 0 0 chr11 88741594 88741685 -33102171 - RSINE1 SINE B4 -64 101 11 6 1262 1305 76 60 0 chr11 88741988 88742172 -33101684 - B2_Mm2 SINE B2 0 195 1 6 1262 917 238 43 30 chr11 88742208 88742438 -33101418 - B4A SINE B4 -45 247 15 6 1262 359 310 26 21 chr11 88742453 88742570 -33101286 - PB1D9 SINE Alu -2 115 5 6 1262 1261 40 0 0 chr11 88743172 88743320 -33100536 - B1_Mus1 SINE Alu 0 148 1 6 1262 225 0 0 0 chr11 88743532 88743557 -33100299 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1262 726 296 48 5 chr11 88743572 88743759 -33100097 - ID_B1 SINE B4 -8 216 22 6 1262 454 276 16 39 chr11 88743807 88743935 -33099921 - RSINE1 SINE B4 -37 128 4 6 1262 667 214 23 0 chr11 88743965 88744096 -33099760 - B1F SINE Alu -10 139 6 6 1262 232 299 15 127 chr11 88743992 88744126 -33099730 - MT2B2 LTR ERVL -321 263 145 6 1262 769 255 207 53 chr11 88744376 88744699 -33099157 + MTEa LTR MaLR 4 376 -3 6 1262 212 311 27 0 chr11 88744716 88744790 -33099066 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 6 1262 245 218 36 0 chr11 88744717 88744772 -33099084 + (CATG)n Simple_repeat Simple_repeat 3 59 0 6 1262 254 73 24 0 chr11 88744799 88744840 -33099016 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1262 423 264 6 33 chr11 88744870 88745105 -33098751 + (TG)n Simple_repeat Simple_repeat 1 228 0 6 1262 1183 54 0 20 chr11 88745158 88745309 -33098547 + B1_Mus1 SINE Alu 1 148 0 6 1262 180 111 0 0 chr11 88745309 88745336 -33098520 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1262 1427 82 16 0 chr11 88745455 88745639 -33098217 + B2_Mm2 SINE B2 1 187 -8 6 1262 580 269 15 0 chr11 88745686 88745816 -33098040 - RSINE1 SINE B4 -19 146 15 6 1262 371 308 49 24 chr11 88745820 88745943 -33097913 - B1F2 SINE Alu -9 140 15 6 1262 539 314 200 48 chr11 88745955 88746423 -33097433 + Zaphod DNA Tip100 141 679 -3352 6 1262 1235 48 0 0 chr11 88746608 88746754 -33097102 - B1_Mm SINE Alu 0 147 2 6 1262 1226 76 99 0 chr11 88746769 88746940 -33096916 + B2_Mm2 SINE B2 2 189 -6 6 1262 1492 78 16 0 chr11 88746945 88747137 -33096719 + B2_Mm2 SINE B2 1 195 0 6 1262 824 268 95 67 chr11 88747197 88747481 -33096375 - B4A SINE B4 0 292 1 6 1262 636 186 119 0 chr11 88747485 88747603 -33096253 - B1_Mur2 SINE Alu -7 142 11 6 1262 421 324 42 28 chr11 88747603 88747624 -33096232 - B4 SINE B4 -69 219 79 6 1262 403 268 146 11 chr11 88747626 88747891 -33095965 - L1MA5 LINE L1 -8 6292 5989 6 1262 1535 59 0 5 chr11 88747964 88748152 -33095704 + B2_Mm2 SINE B2 2 188 -7 6 1262 1120 327 28 84 chr11 88748158 88748726 -33095130 + Zaphod DNA Tip100 1273 1808 -2223 6 1262 298 265 151 17 chr11 88749005 88749124 -33094732 - B4A SINE B4 -18 274 140 6 1262 242 319 73 32 chr11 88749361 88749408 -33094448 + Zaphod DNA Tip100 1869 1914 -2117 6 1262 952 144 13 20 chr11 88749408 88749557 -33094299 - B1_Mur4 SINE Alu -2 148 1 6 1262 242 319 73 32 chr11 88749557 88749729 -33094127 + Zaphod DNA Tip100 1915 2097 -1934 6 1262 568 184 0 10 chr11 88749743 88749842 -33094014 - B1_Mur1 SINE Alu 0 149 52 6 1262 2520 147 34 12 chr11 88749873 88750285 -33093571 + MTC LTR MaLR 1 421 0 6 1262 644 307 50 45 chr11 88750312 88750513 -33093343 + ID_B1 SINE B4 2 203 -21 6 1262 729 188 26 225 chr11 88750531 88750702 -33093154 + B3 SINE B2 1 126 -90 6 1262 1227 68 0 0 chr11 88750702 88750849 -33093007 - B1_Mus2 SINE Alu 0 147 1 6 1262 729 188 26 225 chr11 88750849 88750944 -33092912 + B3 SINE B2 127 214 -2 6 1262 1259 35 7 0 chr11 88750956 88751101 -33092755 + B1_Mus2 SINE Alu 2 147 0 6 1262 185 83 0 27 chr11 88751101 88751138 -33092718 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1262 492 260 46 6 chr11 88751261 88751435 -33092421 + L1MA9 LINE L1 5926 6106 -206 6 1262 229 121 0 0 chr11 88751454 88751487 -33092369 - B1_Mur4 SINE Alu -3 147 115 6 1262 5654 52 65 0 chr11 88751493 88752190 -33091666 - RLTR4_Mm LTR ERV1 0 742 1 6 1262 18773 31 5 0 chr11 88752192 88754431 -33089425 - MuLV-int LTR ERV1 0 7606 5359 6 1262 27155 16 2 1 chr11 88754411 88757583 -33086273 - RLTR4_MM-int LTR ERV1 -4427 3174 1 6 1262 5654 52 65 0 chr11 88757583 88758280 -33085576 - RLTR4_Mm LTR ERV1 0 742 1 6 1262 298 208 0 0 chr11 88758280 88758333 -33085523 - B1F1 SINE Alu -92 57 5 6 1262 441 0 0 0 chr11 88758479 88758528 -33085328 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 6 1262 372 205 93 35 chr11 88758537 88758623 -33085233 + PB1D7 SINE Alu 1 91 -29 6 1262 613 222 22 6 chr11 88758722 88758851 -33085005 - RSINE1 SINE B4 -35 130 1 6 1262 409 311 114 15 chr11 88759412 88759614 -33084242 - ID_B1 SINE B4 -2 222 1 6 1262 308 270 11 11 chr11 88759642 88759732 -33084124 - ID_B1 SINE B4 -1 223 134 6 1262 340 255 56 9 chr11 88759858 88759965 -33083891 - PB1D10 SINE Alu -5 112 1 6 1262 524 157 22 22 chr11 88760071 88760162 -33083694 - B1_Mur1 SINE Alu 0 149 59 6 1262 312 288 62 47 chr11 88760191 88760384 -33083472 - L1MB3 LINE L1 -40 6143 5948 6 1262 605 321 31 44 chr11 88760430 88760723 -33083133 - B4A SINE B4 -2 290 2 6 1262 255 287 17 0 chr11 88760864 88760959 -33082897 - L1MB3 LINE L1 -538 5651 5554 6 1262 246 81 0 0 chr11 88761053 88761090 -33082766 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1262 333 0 0 0 chr11 88761203 88761240 -33082616 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1262 1881 78 0 15 chr11 88761319 88761578 -33082278 - L1Md_F2 LINE L1 0 6582 6328 6 1262 26 30 0 0 chr11 88761694 88761727 -33082129 + AT_rich Low_complexity Low_complexity 1 33 0 6 1262 1205 83 14 6 chr11 88761741 88761924 -33081932 + B2_Mm2 SINE B2 14 203 -13 6 1262 249 224 0 0 chr11 88761925 88761983 -33081873 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1262 793 220 29 53 chr11 88762254 88762499 -33081357 + B4A SINE B4 7 245 -47 6 1262 387 258 68 61 chr11 88763193 88763214 -33080642 + ID_B1 SINE B4 90 222 -2 6 1262 464 275 9 18 chr11 88763214 88763325 -33080531 + B1F1 SINE Alu 38 147 -2 6 1262 297 0 0 0 chr11 88763530 88763563 -33080293 + (TTA)n Simple_repeat Simple_repeat 1 33 0 6 1262 819 158 7 14 chr11 88763572 88763713 -33080143 + B1_Mur4 SINE Alu 5 144 -6 6 1262 927 219 10 40 chr11 88763779 88763979 -33079877 - B3A SINE B2 -2 196 3 6 1262 644 233 120 22 chr11 88764372 88764556 -33079300 + ID_B1 SINE B4 2 203 -21 6 1262 658 286 122 5 chr11 88764590 88764804 -33079052 + B4A SINE B4 15 253 -39 6 1262 1008 136 6 19 chr11 88764955 88765113 -33078743 - RMER17C LTR ERVK 0 410 255 6 1262 1203 51 0 0 chr11 88765142 88765280 -33078576 - B1_Mus2 SINE Alu -7 140 3 6 1262 1819 142 92 81 chr11 88765483 88765842 -33078014 + ORR1B1 LTR MaLR 2 364 -30 6 1262 1165 83 0 0 chr11 88765924 88766068 -33077788 + B1_Mus1 SINE Alu 5 148 0 6 1262 198 71 0 0 chr11 88766093 88766121 -33077735 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 6 1262 1265 91 11 11 chr11 88766122 88766300 -33077556 + B2_Mm1t SINE B2 2 179 -14 6 1262 367 111 19 0 chr11 88766332 88766386 -33077470 + B2_Mm2 SINE B2 47 101 -94 6 1262 820 41 0 0 chr11 88766435 88766532 -33077324 + U6 snRNA snRNA 2 98 -9 6 1262 34 55 0 0 chr11 88766535 88766590 -33077266 + AT_rich Low_complexity Low_complexity 1 55 0 6 1262 180 0 0 0 chr11 88766664 88766684 -33077172 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1262 1164 74 24 30 chr11 88766705 88766873 -33076983 - B2_Mm2 SINE B2 -27 168 2 6 1262 341 185 222 0 chr11 88766928 88767009 -33076847 - ID_B1 SINE B4 0 224 126 6 1262 671 285 147 7 chr11 88767059 88767331 -33076525 - MLT1F2 LTR MaLR -4 556 235 6 1262 383 234 121 13 chr11 88767445 88767591 -33076265 - MTEa LTR MaLR -3 376 205 6 1262 432 106 310 26 chr11 88767679 88767795 -33076061 - B2_Mm2 SINE B2 0 195 47 6 1262 1093 76 7 0 chr11 88767818 88767963 -33075893 - B2_Mm1t SINE B2 -46 147 2 6 1262 308 146 0 18 chr11 88768141 88768197 -33075659 + PB1D9 SINE Alu 5 59 -61 6 1262 640 299 7 7 chr11 88768212 88768367 -33075489 + RSINE1 SINE B4 3 157 -8 6 1262 23 0 0 0 chr11 88768389 88768412 -33075444 + AT_rich Low_complexity Low_complexity 1 23 0 6 1262 996 42 0 0 chr11 88768414 88768534 -33075322 + B1_Mm SINE Alu 25 144 -3 6 1262 261 0 0 0 chr11 88768534 88768563 -33075293 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1262 378 214 36 58 chr11 88769009 88769148 -33074708 + RLTR15 LTR ERVK 4 139 -220 6 1262 325 241 43 54 chr11 88769164 88769256 -33074600 + ID4 SINE ID 16 106 -46 6 1262 21 0 0 0 chr11 88769324 88769345 -33074511 + AT_rich Low_complexity Low_complexity 1 21 0 6 1262 1049 56 110 7 chr11 88769351 88769496 -33074360 + B2_Mm1t SINE B2 1 160 -33 6 1262 423 0 0 0 chr11 88769496 88769543 -33074313 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 6 1262 660 276 58 12 chr11 88769561 88769733 -33074123 - B3A SINE B2 -18 180 1 7 1262 300 137 0 0 chr11 88769900 88769951 -33073905 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 7 1262 452 301 92 40 chr11 88769952 88770125 -33073731 - B3 SINE B2 -33 183 2 7 1262 1059 258 9 17 chr11 88770125 88770351 -33073505 - B4 SINE B4 -67 225 2 7 1262 1064 59 0 29 chr11 88770530 88770669 -33073187 - B2_Mm2 SINE B2 -59 136 2 7 1262 769 151 64 7 chr11 88770669 88770809 -33073047 - B1_Mur4 SINE Alu -1 149 2 7 1262 781 22 0 0 chr11 88771433 88771525 -33072331 + BC1_Mm scRNA scRNA 1 92 -60 7 1262 240 328 0 0 chr11 88771813 88771877 -33071979 - B4A SINE B4 -10 282 219 7 1262 654 79 0 0 chr11 88771894 88771983 -33071873 + (TG)n Simple_repeat Simple_repeat 1 89 0 7 1262 447 279 136 24 chr11 88771983 88772108 -33071748 - RSINE1 SINE B4 -24 141 3 7 1262 516 320 13 26 chr11 88772108 88772256 -33071600 - B4A SINE B4 -62 230 85 7 1262 2004 148 22 27 chr11 88772268 88772635 -33071221 - IAPLTR1_Mm LTR ERVK -2 365 1 7 1262 51186 11 2 21 chr11 88772635 88779183 -33064673 - IAPEz-int LTR ERVK 0 6481 35 7 1262 1991 148 22 27 chr11 88779192 88779559 -33064297 - IAPLTR1_Mm LTR ERVK -2 365 1 7 1262 201 74 0 0 chr11 88779559 88779586 -33064270 + (CAT)n Simple_repeat Simple_repeat 1 27 0 7 1262 229 306 0 16 chr11 88779590 88779653 -33064203 - RSINE1 SINE B4 0 165 104 7 1262 403 238 9 47 chr11 88780120 88780226 -33063630 - RSINE1 SINE B4 -61 104 3 7 1262 740 153 34 14 chr11 88780237 88780383 -33063473 - B2_Mm2 SINE B2 0 195 47 7 1262 562 319 65 49 chr11 88780444 88780749 -33063107 - ERVL-B4-int LTR ERVL -954 4803 4465 7 1262 1618 201 50 25 chr11 88780760 88781123 -33062733 + MTEb LTR MaLR 7 378 -1 7 1262 1284 266 139 24 chr11 88781177 88781717 -33062139 - ERVL-B4-int LTR ERVL -1278 4436 3835 7 1262 1431 75 37 5 chr11 88782073 88782262 -33061594 - B2_Mm2 SINE B2 0 195 1 7 1262 1317 81 49 0 chr11 88782293 88782478 -33061378 - B2_Mm2 SINE B2 0 195 2 7 1262 240 241 126 0 chr11 88782481 88782568 -33061288 - MLT1A1 LTR MaLR -310 98 1 7 1262 288 0 0 0 chr11 88782658 88782690 -33061166 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1262 23 0 0 0 chr11 88782773 88782796 -33061060 + AT_rich Low_complexity Low_complexity 1 23 0 7 1262 1176 50 0 7 chr11 88782805 88782947 -33060909 - B1_Mus2 SINE Alu -4 143 3 7 1262 1245 41 0 0 chr11 88783227 88783373 -33060483 - B1_Mus2 SINE Alu 0 147 2 7 1262 1371 89 15 20 chr11 88783413 88783608 -33060248 + B2_Mm2 SINE B2 1 194 -1 7 1262 652 130 18 36 chr11 88783622 88783734 -33060122 + B1_Mur2 SINE Alu 9 118 -31 7 1262 349 141 12 12 chr11 88783738 88783808 -33060048 + G-rich Low_complexity Low_complexity 3 73 0 7 1262 1426 17 11 6 chr11 88783808 88783985 -33059871 + (GGGGA)n Simple_repeat Simple_repeat 1 178 0 7 1262 349 141 12 12 chr11 88783985 88784000 -33059856 + G-rich Low_complexity Low_complexity 74 88 0 7 1262 222 180 0 76 chr11 88784000 88784012 -33059844 + polypurine Low_complexity Low_complexity 4 15 0 7 1262 1347 72 0 0 chr11 88784012 88784192 -33059664 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1262 222 180 0 76 chr11 88784192 88784217 -33059639 + polypurine Low_complexity Low_complexity 16 40 0 7 1262 1260 112 21 11 chr11 88784217 88784407 -33059449 + B2_Mm1t SINE B2 2 193 0 7 1262 222 180 0 76 chr11 88784407 88784434 -33059422 + polypurine Low_complexity Low_complexity 41 64 0 7 1262 408 159 182 0 chr11 88784434 88784522 -33059334 - PB1D9 SINE Alu -8 112 9 7 1262 610 290 52 47 chr11 88784548 88784740 -33059116 - B3A SINE B2 -3 195 3 7 1262 318 299 115 53 chr11 88785134 88785455 -33058401 + L1ME4a LINE L1 5606 5946 -178 7 1262 370 246 30 99 chr11 88785590 88785721 -33058135 - ID_B1 SINE B4 -12 212 91 7 1262 913 253 9 18 chr11 88786333 88786558 -33057298 + ID_B1 SINE B4 2 224 0 7 1262 486 266 55 0 chr11 88786773 88786901 -33056955 + ID_B1 SINE B4 81 215 -9 7 1262 324 0 0 0 chr11 88786901 88786937 -33056919 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1262 903 36 0 0 chr11 88786937 88787047 -33056809 + B1_Mus1 SINE Alu 39 148 0 7 1262 445 226 9 47 chr11 88787135 88787154 -33056702 + B4 SINE B4 68 82 -210 7 1262 712 167 8 31 chr11 88787154 88787284 -33056572 + B1_Mur3 SINE Alu 2 128 -21 7 1262 725 125 8 0 chr11 88787286 88787406 -33056450 + (GA)n Simple_repeat Simple_repeat 2 122 0 7 1262 693 259 44 54 chr11 88787413 88787617 -33056239 + B4 SINE B4 91 292 0 7 1262 790 168 35 14 chr11 88787683 88787828 -33056028 + B1F2 SINE Alu 2 149 0 7 1262 335 266 8 58 chr11 88788019 88788139 -33055717 + RSINE1 SINE B4 18 131 -34 7 1262 661 172 247 6 chr11 88788207 88788377 -33055479 + B3 SINE B2 2 212 -4 7 1262 534 197 30 15 chr11 88788377 88788511 -33055345 + RCHARR1 DNA MER1_type 782 917 -57 7 1262 533 214 58 8 chr11 88788929 88789068 -33054788 - B1F SINE Alu 0 149 5 7 1262 1247 96 147 0 chr11 88789504 88789701 -33054155 - URR1A DNA MER1_type 0 226 1 7 1262 948 188 43 16 chr11 88789725 88789909 -33053947 + B4A SINE B4 49 237 -55 7 1262 797 191 131 16 chr11 88789904 88790103 -33053753 + B3 SINE B2 10 201 -15 7 1262 511 212 88 36 chr11 88790106 88790243 -33053613 + B1_Mur1 SINE Alu 1 144 -5 7 1262 207 0 0 0 chr11 88790328 88790351 -33053505 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1262 198 292 69 59 chr11 88790548 88790650 -33053206 + MIRc SINE MIR 46 148 -120 7 1262 450 0 0 0 chr11 88790829 88790879 -33052977 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1262 225 0 0 0 chr11 88790931 88790956 -33052900 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1262 257 238 65 130 chr11 88791031 88791123 -33052733 - PB1 SINE Alu -33 94 9 7 1262 345 47 0 0 chr11 88791762 88791805 -33052051 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1262 725 169 0 0 chr11 88791806 88791924 -33051932 + RLTR20A1 LTR ERVK 13 130 -421 7 1262 993 198 29 48 chr11 88791918 88792169 -33051687 + RLTR20A1 LTR ERVK 276 551 0 7 1262 1129 99 6 6 chr11 88792430 88792585 -33051271 + RLTR11B LTR ERVK 287 441 -12 7 1262 2633 144 81 38 chr11 88792585 88792665 -33051191 - RLTR11A LTR ERVK 0 528 454 7 1262 1086 94 0 0 chr11 88792665 88792803 -33051053 + B1_Mus1 SINE Alu 1 138 -10 7 1262 258 32 0 0 chr11 88792803 88792834 -33051022 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1262 2633 144 81 38 chr11 88792834 88793258 -33050598 - RLTR11A LTR ERVK -75 453 2 7 1262 572 253 0 82 chr11 88793628 88793787 -33050069 - RSINE1 SINE B4 -17 148 3 7 1262 23 0 0 0 chr11 88793787 88793810 -33050046 + AT_rich Low_complexity Low_complexity 1 23 0 7 1262 1175 48 0 20 chr11 88793810 88793958 -33049898 - B1_Mus2 SINE Alu 0 147 3 7 1262 360 245 26 26 chr11 88793963 88794076 -33049780 - PB1D10 SINE Alu 0 117 5 7 1262 195 42 0 0 chr11 88794092 88794116 -33049740 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 7 1262 282 29 0 0 chr11 88794126 88794161 -33049695 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 7 1262 1302 26 19 0 chr11 88794161 88794317 -33049539 - B2_Mm1t SINE B2 -33 160 2 7 1262 1138 76 14 0 chr11 88794320 88794464 -33049392 - B1_Mus2 SINE Alu -1 146 1 7 1262 577 177 140 44 chr11 88795442 88795578 -33048278 + B1_Mur4 SINE Alu 2 150 0 7 1262 591 277 44 35 chr11 88795578 88795806 -33048050 + L1MB7 LINE L1 5895 6124 -60 7 1262 245 314 80 32 chr11 88796295 88796420 -33047436 + LTR68 LTR ERV1 402 532 -208 7 1262 308 309 47 31 chr11 88796362 88796443 -33047413 - ID_B1 SINE B4 -8 216 131 7 1262 1248 106 16 26 chr11 88796443 88796636 -33047220 - B2_Mm1t SINE B2 -2 191 1 7 1262 308 309 47 31 chr11 88796636 88796681 -33047175 - ID_B1 SINE B4 -94 130 88 7 1262 242 308 35 57 chr11 88796699 88796840 -33047016 + YREP_Mm Unknown Unknown 151 288 -1524 7 1262 610 269 7 22 chr11 88796727 88796864 -33046992 - ID_B1 SINE B4 -2 222 88 7 1262 291 229 42 14 chr11 88797408 88797479 -33046377 - ID4 SINE ID -9 74 2 7 1262 267 161 0 82 chr11 88797620 88797681 -33046175 + 4.5SRNA scRNA scRNA 33 88 -6 7 1262 369 142 22 0 chr11 88797628 88797702 -33046154 + B1_Mur1 SINE Alu 41 120 -29 7 1262 858 141 0 0 chr11 88797825 88797967 -33045889 + (CCA)n Simple_repeat Simple_repeat 3 144 0 7 1262 542 248 176 64 chr11 88797984 88798251 -33045605 + MTEb LTR MaLR 83 379 0 7 1262 740 191 43 0 chr11 88798915 88799056 -33044800 + B1_Mus2 SINE Alu 1 147 0 7 1262 396 223 61 104 chr11 88799247 88799362 -33044494 + MER20 DNA MER1_type 31 140 -79 7 1262 898 243 85 9 chr11 88799369 88799581 -33044275 + B4A SINE B4 1 228 -64 7 1262 1097 60 0 0 chr11 88799581 88799715 -33044141 + B1_Mus1 SINE Alu 2 135 -13 7 1262 1193 133 11 0 chr11 88799759 88799939 -33043917 + B2_Mm2 SINE B2 1 182 -13 7 1262 255 61 0 0 chr11 88799939 88799972 -33043884 + (TAA)n Simple_repeat Simple_repeat 2 34 0 7 1262 854 153 92 17 chr11 88799982 88800155 -33043701 + B2_Mm2 SINE B2 5 190 -5 7 1262 870 166 74 0 chr11 88800166 88800341 -33043515 + B2_Mm2 SINE B2 2 189 -6 7 1262 714 241 62 38 chr11 88800349 88800560 -33043296 + B3 SINE B2 1 216 0 7 1262 207 0 0 0 chr11 88800633 88800656 -33043200 + (CATG)n Simple_repeat Simple_repeat 2 24 0 7 1262 315 0 0 0 chr11 88800989 88801024 -33042832 + (CCA)n Simple_repeat Simple_repeat 3 37 0 7 1262 261 0 0 0 chr11 88801025 88801054 -33042802 + (CAG)n Simple_repeat Simple_repeat 2 30 0 7 1262 1146 102 73 0 chr11 88801398 88801575 -33042281 - B2_Mm2 SINE B2 -4 191 2 7 1262 214 349 0 46 chr11 88801899 88801986 -33041870 + RSINE1 SINE B4 60 142 -23 7 1262 673 128 111 15 chr11 88802057 88802192 -33041664 + B1_Mur2 SINE Alu 2 149 0 7 1262 27 0 0 0 chr11 88802192 88802219 -33041637 + AT_rich Low_complexity Low_complexity 1 27 0 8 1262 1222 62 0 0 chr11 88802230 88802376 -33041480 + B1_Mm SINE Alu 2 147 0 8 1262 353 346 84 59 chr11 88803180 88803453 -33040403 + L1MC4a LINE L1 5813 6092 -1790 8 1262 398 207 37 141 chr11 88803631 88803766 -33040090 + MT2B LTR ERVL 144 264 -337 8 1262 1058 16 0 0 chr11 88803677 88803801 -33040055 + B1_Mus1 SINE Alu 25 148 0 8 1262 391 233 64 85 chr11 88803679 88803820 -33040036 + B4A SINE B4 111 248 -44 8 1262 289 198 71 71 chr11 88803990 88804088 -33039768 - PB1D7 SINE Alu 0 120 23 8 1262 292 203 74 25 chr11 88804116 88804237 -33039619 + (TATAG)n Simple_repeat Simple_repeat 2 128 0 8 1262 948 196 17 99 chr11 88804291 88804467 -33039389 + B3 SINE B2 1 160 -56 8 1262 528 16 0 0 chr11 88804467 88804528 -33039328 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1262 948 196 17 99 chr11 88804528 88804583 -33039273 + B3 SINE B2 161 213 -3 8 1262 1251 103 5 21 chr11 88804589 88804778 -33039078 + B2_Mm1a SINE B2 1 186 -7 8 1262 239 169 58 58 chr11 88804782 88804851 -33039005 - B3 SINE B2 0 216 148 8 1262 415 207 65 57 chr11 88804830 88804953 -33038903 + RSINE1 SINE B4 40 163 -2 8 1262 201 182 0 0 chr11 88804959 88804992 -33038864 + T-rich Low_complexity Low_complexity 1 33 0 8 1262 189 0 0 0 chr11 88805243 88805264 -33038592 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 8 1262 1198 55 0 0 chr11 88805268 88805413 -33038443 - B1_Mus2 SINE Alu -1 146 2 8 1262 911 228 22 73 chr11 88805981 88806213 -33037643 + B4 SINE B4 4 223 -69 8 1262 921 101 22 0 chr11 88806077 88806216 -33037640 + B1_Mur4 SINE Alu 9 150 0 8 1262 512 224 44 95 chr11 88806217 88806375 -33037481 + B4 SINE B4 81 230 -62 8 1262 792 258 35 5 chr11 88806631 88806834 -33037022 + ID_B1 SINE B4 4 212 -12 8 1262 192 77 0 0 chr11 88806835 88806861 -33036995 + (TC)n Simple_repeat Simple_repeat 2 27 0 8 1262 188 122 0 109 chr11 88806878 88806933 -33036923 + CT-rich Low_complexity Low_complexity 2 50 0 8 1262 180 372 92 0 chr11 88807074 88807227 -33036629 - MIRc SINE MIR -95 173 7 8 1262 347 247 35 0 chr11 88807756 88807841 -33036015 - ID_B1 SINE B4 0 224 137 8 1262 959 48 48 0 chr11 88807939 88808064 -33035792 - B1_Mus1 SINE Alu 0 148 18 8 1262 727 204 50 91 chr11 88808064 88808160 -33035696 - ID_B1 SINE B4 0 224 13 8 1262 837 99 0 0 chr11 88809025 88809146 -33034710 + (GGGA)n Simple_repeat Simple_repeat 2 122 0 8 1262 314 197 105 0 chr11 88809381 88809457 -33034399 + B1_Mus1 SINE Alu 1 84 -64 8 1262 255 264 104 52 chr11 88810172 88810268 -33033588 + PB1D10 SINE Alu 5 105 -12 8 1262 755 247 251 34 chr11 88810848 88811087 -33032769 - B4A SINE B4 0 292 2 8 1262 189 0 0 0 chr11 88812465 88812486 -33031370 + (TGG)n Simple_repeat Simple_repeat 2 22 0 8 1262 594 174 118 34 chr11 88812594 88812622 -33031234 + Lx9 LINE L1 7445 7473 -171 8 1262 528 16 0 0 chr11 88812622 88812683 -33031173 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1262 594 174 118 34 chr11 88812683 88812832 -33031024 + Lx9 LINE L1 7474 7637 -7 8 1262 483 186 7 0 chr11 88813056 88813144 -33030712 + PB1D10 SINE Alu 28 120 -29 8 1262 1073 98 107 17 chr11 88813144 88813321 -33030535 + B2_Mm1a SINE B2 1 193 0 8 1262 1163 81 0 0 chr11 88813331 88813479 -33030377 + B1_Mus1 SINE Alu 1 148 0 8 1262 252 0 0 0 chr11 88813479 88813507 -33030349 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1262 682 234 0 20 chr11 88814073 88814221 -33029635 + B1_Mur1 SINE Alu 5 149 0 8 1262 1277 49 67 0 chr11 88814224 88814388 -33029468 + B2_Mm1t SINE B2 1 175 -18 8 1262 242 29 0 28 chr11 88814405 88814441 -33029415 + (CACAA)n Simple_repeat Simple_repeat 5 39 0 8 1262 391 274 91 34 chr11 88814465 88814673 -33029183 + ID_B1 SINE B4 3 222 -2 8 1262 626 245 72 13 chr11 88814815 88814968 -33028888 + B4 SINE B4 113 274 -18 8 1262 183 80 0 0 chr11 88814973 88814998 -33028858 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1262 1209 113 22 11 chr11 88815191 88815370 -33028486 + B2_Mm2 SINE B2 1 181 -14 8 1262 413 63 355 0 chr11 88815402 88815512 -33028344 + B2_Mm2 SINE B2 47 195 0 8 1262 502 277 46 8 chr11 88815522 88815653 -33028203 + RSINE1 SINE B4 1 136 -29 8 1262 213 39 0 0 chr11 88815683 88815709 -33028147 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 8 1262 988 197 5 46 chr11 88815720 88815917 -33027939 + B3 SINE B2 3 191 -25 8 1262 527 140 144 36 chr11 88815949 88816060 -33027796 + B1_Mus1 SINE Alu 26 148 0 8 1262 189 195 0 0 chr11 88816060 88816101 -33027755 + GA-rich Low_complexity Low_complexity 4 44 0 8 1262 691 281 26 15 chr11 88817019 88817214 -33026642 - B3A SINE B2 -1 197 1 8 1262 1133 95 0 0 chr11 88817293 88817441 -33026415 + B1_Mus1 SINE Alu 1 148 0 8 1262 662 146 16 0 chr11 88817441 88817564 -33026292 + GA-rich Low_complexity Low_complexity 2 126 0 8 1262 736 256 109 42 chr11 88817596 88817788 -33026068 + B3 SINE B2 6 210 -6 8 1262 188 34 0 33 chr11 88818429 88818459 -33025397 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1262 1210 55 0 0 chr11 88818461 88818607 -33025249 - B1_Mus2 SINE Alu -1 146 1 8 1262 269 316 0 25 chr11 88818673 88818754 -33025102 + PB1D7 SINE Alu 37 115 -5 8 1262 225 119 0 0 chr11 88818923 88818965 -33024891 + (T)n Simple_repeat Simple_repeat 1 42 0 8 1262 180 0 0 0 chr11 88818970 88818990 -33024866 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 8 1262 1207 48 0 7 chr11 88818990 88819131 -33024725 - B1_Mm SINE Alu -5 142 2 8 1262 509 270 168 60 chr11 88819450 88819718 -33024138 - MTEb LTR MaLR 0 379 83 8 1262 231 36 0 0 chr11 88819735 88819763 -33024093 + (TGG)n Simple_repeat Simple_repeat 3 30 0 8 1262 831 74 0 0 chr11 88819813 88819921 -33023935 - B2_Mm2 SINE B2 -87 108 1 8 1262 4942 145 18 45 chr11 88819923 88820524 -33023332 - MYSERV6-int LTR ERVK -162 8797 8225 8 1262 1112 57 43 0 chr11 88820524 88820665 -33023191 - B1_Mus2 SINE Alu 0 147 1 8 1262 4942 145 18 45 chr11 88820665 88820907 -33022949 - MYSERV6-int LTR ERVK -735 8224 7975 8 1262 1145 96 120 0 chr11 88820907 88821074 -33022782 - B2_Mm2 SINE B2 -8 187 1 8 1262 4942 145 18 45 chr11 88821074 88821088 -33022768 - MYSERV6-int LTR ERVK -985 7974 7963 8 1262 292 241 0 36 chr11 88821088 88821226 -33022630 + ORR1B1-int LTR MaLR 627 759 -750 8 1262 1099 63 0 14 chr11 88821118 88821262 -33022594 + B1_Mus1 SINE Alu 6 147 -1 8 1262 2010 140 16 7 chr11 88821278 88821588 -33022268 - MYSERV6-int LTR ERVK -1295 7664 7352 8 1262 1455 68 21 0 chr11 88821603 88821794 -33022062 - B2_Mm2 SINE B2 0 195 1 8 1262 1697 132 82 104 chr11 88821795 88821901 -33021955 - MYSERV6-int LTR ERVK -2184 6775 6674 8 1262 3726 72 72 20 chr11 88821901 88822440 -33021416 - RMER2 LTR ERV1 0 567 1 8 1262 1697 132 82 104 chr11 88822440 88822688 -33021168 - MYSERV6-int LTR ERVK -2286 6673 6419 8 1262 1091 75 7 7 chr11 88822688 88822835 -33021021 + B1_Mm SINE Alu 1 147 0 8 1262 1697 132 82 104 chr11 88822835 88822903 -33020953 - MYSERV6-int LTR ERVK -2541 6418 6361 8 1262 242 246 0 44 chr11 88822905 88822973 -33020883 - ID_B1 SINE B4 -70 154 90 8 1262 298 196 0 0 chr11 88822923 88822979 -33020877 - B1_Mur4 SINE Alu -94 56 1 8 1262 348 33 14 129 chr11 88823028 88823076 -33020780 + B2_Mm1t SINE B2 129 177 -16 8 1262 1618 47 0 0 chr11 88823076 88823268 -33020588 - B2_Mm1t SINE B2 0 193 2 8 1262 348 33 14 129 chr11 88823268 88823289 -33020567 + B2_Mm1t SINE B2 178 190 -3 8 1262 1135 64 7 0 chr11 88823291 88823432 -33020424 + B1_Mus2 SINE Alu 1 142 -5 8 1262 25 0 0 0 chr11 88823432 88823457 -33020399 + AT_rich Low_complexity Low_complexity 1 25 0 8 1262 514 222 0 0 chr11 88823460 88823568 -33020288 - MYSERV6-int LTR ERVK -6868 2091 1984 8 1262 730 134 42 0 chr11 88823568 88823687 -33020169 - RMER19A LTR ERVK 0 737 614 8 1262 2517 104 6 19 chr11 88823687 88824051 -33019805 - RLTR10D LTR ERVK 0 359 1 8 1262 2175 203 195 0 chr11 88824051 88824569 -33019287 - RMER19A LTR ERVK -118 619 1 8 1262 1898 192 21 51 chr11 88824569 88824725 -33019131 - MYSERV6-int LTR ERVK -6970 1989 1837 8 1262 1612 36 0 20 chr11 88824725 88824921 -33018935 - B2_Mm1a SINE B2 0 193 2 8 1262 1898 192 21 51 chr11 88824921 88825197 -33018659 - MYSERV6-int LTR ERVK -7123 1836 1570 8 1262 22 0 0 0 chr11 88825986 88826008 -33017848 + AT_rich Low_complexity Low_complexity 1 22 0 8 1262 4984 157 87 37 chr11 88826611 88827024 -33016832 - MYSERV6-int LTR ERVK -7410 1549 1088 8 1262 201 39 0 0 chr11 88827024 88827050 -33016806 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1262 1103 79 0 0 chr11 88827050 88827189 -33016667 - B1_Mus2 SINE Alu -8 139 1 8 1262 4984 157 87 37 chr11 88827189 88827785 -33016071 - MYSERV6-int LTR ERVK -7872 1087 489 8 1262 744 83 225 0 chr11 88827796 88827916 -33015940 - B1_Mus2 SINE Alu 0 147 1 8 1262 1000 182 20 15 chr11 88827919 88828114 -33015742 - MYSERV6-int LTR ERVK -8763 196 1 8 1262 878 204 127 41 chr11 88828114 88828451 -33015405 - RMER6B LTR ERVK 0 461 37 8 1262 410 160 0 29 chr11 88828600 88828659 -33015197 + T-rich Low_complexity Low_complexity 42 100 0 8 1262 1278 34 0 0 chr11 88828659 88828806 -33015050 - B1_Mm SINE Alu 0 147 1 8 1262 1355 91 27 5 chr11 88828807 88828995 -33014861 - B2_Mm2 SINE B2 -1 194 3 8 1262 410 160 0 29 chr11 88828995 88829036 -33014820 + T-rich Low_complexity Low_complexity 1 41 0 8 1262 1126 103 0 0 chr11 88829037 88829183 -33014673 - B1_Mus2 SINE Alu -1 146 1 8 1262 298 256 0 25 chr11 88829210 88829290 -33014566 + ID4_ SINE ID 3 80 -3 8 1262 531 230 30 7 chr11 88829482 88829632 -33014224 + RMER19B LTR ERVK 1 160 -451 8 1262 273 218 0 52 chr11 88829631 88829689 -33014167 - B3 SINE B2 -123 93 39 8 1262 415 180 0 61 chr11 88829667 88829773 -33014083 - RMER19A LTR ERVK -801 101 4 8 1262 963 246 114 53 chr11 88829862 88830222 -33013634 + RMER16 LTR ERVK 152 533 0 8 1262 2475 118 64 2 chr11 88830233 88830642 -33013214 + RMER16-int LTR ERVK 2491 2924 -2482 8 1262 357 47 0 0 chr11 88830640 88830683 -33013173 + RMER16-int LTR ERVK 3361 3403 -2003 8 1262 717 70 48 80 chr11 88830732 88830857 -33012999 + B2_Mm2 SINE B2 3 123 -72 8 1262 874 50 0 16 chr11 88830857 88830935 -33012921 + (TTC)n Simple_repeat Simple_repeat 1 77 0 8 1262 1620 0 0 0 chr11 88830935 88831115 -33012741 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1262 874 50 0 16 chr11 88831115 88831158 -33012698 + (TTC)n Simple_repeat Simple_repeat 3 45 0 8 1262 1203 62 0 0 chr11 88831158 88831304 -33012552 - B1_Mm SINE Alu 0 147 2 8 1262 349 164 0 40 chr11 88831304 88831380 -33012476 + B2_Mm2 SINE B2 109 181 -14 8 1262 833 198 123 37 chr11 88831378 88831707 -33012149 + RMER6B LTR ERVK 46 461 0 9 1262 924 188 80 126 chr11 88831707 88831860 -33011996 + MYSERV6-int LTR ERVK 1 140 -8819 9 1262 694 77 256 0 chr11 88831860 88831977 -33011879 + B1_Mus1 SINE Alu 2 148 0 9 1262 924 188 80 126 chr11 88831977 88832109 -33011747 + MYSERV6-int LTR ERVK 141 273 -8686 9 1262 22 56 0 0 chr11 88832118 88832154 -33011702 + AT_rich Low_complexity Low_complexity 1 36 0 9 1262 1269 90 45 0 chr11 88832162 88832339 -33011517 - B2_Mm2 SINE B2 -8 187 3 9 1262 1075 103 0 20 chr11 88832342 88832356 -33011500 - B1_Mus2 SINE Alu -1 146 135 9 1262 291 28 0 0 chr11 88832356 88832392 -33011464 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1262 1075 103 0 20 chr11 88832392 88832526 -33011330 - B1_Mus2 SINE Alu -13 134 1 9 1262 249 308 0 25 chr11 88832553 88832633 -33011223 + ID4_ SINE ID 3 80 -3 9 1262 1160 88 13 0 chr11 88832676 88832835 -33011021 - B2_Mm2 SINE B2 -34 161 1 9 1262 406 154 236 81 chr11 88832835 88832983 -33010873 + MYSERV6-int LTR ERVK 265 435 -8524 9 1262 551 179 94 31 chr11 88832979 88833106 -33010750 + MYSERV6-int LTR ERVK 363 497 -8462 9 1262 1163 57 0 0 chr11 88833107 88833247 -33010609 + B1_Mus2 SINE Alu 1 140 -7 9 1262 231 0 50 25 chr11 88833247 88833287 -33010569 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 1262 3050 143 135 19 chr11 88833288 88833924 -33009932 + MYSERV6-int LTR ERVK 851 1560 -7399 9 1262 22 0 0 0 chr11 88834396 88834418 -33009438 + AT_rich Low_complexity Low_complexity 1 22 0 9 1262 375 81 48 16 chr11 88834665 88834728 -33009128 + B2_Mm1a SINE B2 123 187 -6 9 1262 190 106 0 41 chr11 88835532 88835581 -33008275 + (TGGGGG)n Simple_repeat Simple_repeat 2 48 0 9 1262 517 203 249 22 chr11 88835997 88836178 -33007678 + ID_B1 SINE B4 3 224 0 9 1262 1109 90 7 0 chr11 88836189 88836334 -33007522 + B1_Mus2 SINE Alu 2 147 0 9 1262 300 27 0 0 chr11 88836345 88836382 -33007474 + (GA)n Simple_repeat Simple_repeat 1 37 0 9 1262 486 207 223 0 chr11 88836384 88836505 -33007351 + B1_Mur4 SINE Alu 3 150 0 9 1262 1256 41 0 0 chr11 88836709 88836855 -33007001 + B1_Mm SINE Alu 2 147 0 9 1262 300 186 0 0 chr11 88837094 88837153 -33006703 + C-rich Low_complexity Low_complexity 4 62 0 9 1262 229 274 13 40 chr11 88837198 88837274 -33006582 - PB1D9 SINE Alu -6 114 41 9 1262 236 212 0 108 chr11 88837601 88837675 -33006181 + ID4_ SINE ID 1 66 -17 9 1262 620 273 85 10 chr11 88837749 88837949 -33005907 + B3 SINE B2 2 216 0 9 1262 852 237 149 52 chr11 88838114 88838363 -33005493 - B4A SINE B4 -2 290 18 9 1262 287 343 22 22 chr11 88838408 88838545 -33005311 - Lx8 LINE L1 -277 7196 7060 9 1262 289 319 88 0 chr11 88838604 88838695 -33005161 - U6 snRNA snRNA -6 101 3 9 1262 1211 113 22 11 chr11 88838802 88838981 -33004875 + B2_Mm2 SINE B2 1 181 -14 9 1262 348 124 0 39 chr11 88839050 88839117 -33004739 + B2_Mm2 SINE B2 47 109 -107 9 1262 644 282 17 34 chr11 88839176 88839352 -33004504 + B3A SINE B2 1 173 -25 9 1262 791 66 192 32 chr11 88839383 88839508 -33004348 + B1_Mus1 SINE Alu 4 148 0 9 1262 296 203 0 39 chr11 88839793 88839870 -33003986 - L1MA5 LINE L1 -7 6293 6220 9 1262 1656 36 0 0 chr11 88839999 88840191 -33003665 - B2_Mm1a SINE B2 0 193 2 9 1262 1211 55 0 0 chr11 88840195 88840341 -33003515 - B1_Mus1 SINE Alu -2 146 1 9 1262 1482 78 16 0 chr11 88840381 88840572 -33003284 - B2_Mm2 SINE B2 -1 194 1 9 1262 1253 85 80 0 chr11 88840577 88840753 -33003103 - B2_Mm2 SINE B2 -4 191 2 9 1262 233 293 17 0 chr11 88840773 88840831 -33003025 + B1_Mus1 SINE Alu 21 79 -69 9 1262 460 81 13 13 chr11 88840852 88840927 -33002929 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 9 1262 214 191 0 0 chr11 88841087 88841129 -33002727 + T-rich Low_complexity Low_complexity 1 42 0 9 1262 629 119 92 0 chr11 88841144 88841253 -33002603 - L1Md_F2 LINE L1 -12 6570 6452 9 1262 252 252 134 25 chr11 88841275 88841409 -33002447 - L1MA4 LINE L1 -373 5927 5704 9 1262 24 32 0 0 chr11 88841616 88841647 -33002209 + AT_rich Low_complexity Low_complexity 1 31 0 9 1262 225 344 117 55 chr11 88841647 88841810 -33002046 + MIRb SINE MIR 25 197 -71 9 1262 864 184 7 13 chr11 88841857 88842006 -33001850 + B1_Mur1 SINE Alu 1 148 -1 9 1262 1682 31 0 0 chr11 88842024 88842217 -33001639 + B2_Mm1a SINE B2 1 193 0 9 1262 360 260 46 37 chr11 88844000 88844108 -32999748 + PB1D10 SINE Alu 9 117 0 9 1262 323 155 0 33 chr11 88844262 88844322 -32999534 - B2_Mm2 SINE B2 -91 104 47 9 1262 1175 109 6 0 chr11 88844358 88844523 -32999333 - B2_Mm1t SINE B2 -26 167 2 9 1262 638 218 82 49 chr11 88844836 88845010 -32998846 + B3A SINE B2 1 181 -17 9 1262 360 64 0 0 chr11 88845010 88845057 -32998799 + (CATA)n Simple_repeat Simple_repeat 4 50 0 9 1262 662 210 0 61 chr11 88845089 88845236 -32998620 + B1_Mus2 SINE Alu 1 138 -9 9 1262 1418 82 0 44 chr11 88845362 88845565 -32998291 - B2_Mm2 SINE B2 -1 194 1 9 1262 785 138 286 23 chr11 88845573 88845744 -32998112 - B3 SINE B2 0 216 1 9 1262 557 215 0 27 chr11 88845765 88845875 -32997981 - PB1D10 SINE Alu -8 109 3 9 1262 813 215 43 37 chr11 88846887 88847075 -32996781 + ID_B1 SINE B4 32 220 -4 9 1262 303 28 0 0 chr11 88847185 88847221 -32996635 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1262 189 171 0 0 chr11 88847221 88847256 -32996600 + (CATA)n Simple_repeat Simple_repeat 2 36 0 9 1262 323 250 12 24 chr11 88847258 88847340 -32996516 - HAL1-3A_ME LINE L1 -831 2027 1947 9 1262 519 279 97 54 chr11 88847607 88847819 -32996037 + B4 SINE B4 8 224 -68 9 1262 232 204 130 0 chr11 88847941 88847995 -32995861 + Tigger6a DNA MER2_type 569 629 -454 9 1262 219 198 88 0 chr11 88848005 88848070 -32995786 + B1F SINE Alu 27 97 -23 9 1262 601 262 34 14 chr11 88848457 88848604 -32995252 - RSINE1 SINE B4 0 165 16 9 1262 631 240 109 0 chr11 88848648 88848840 -32995016 - ID_B1 SINE B4 -8 216 4 9 1262 338 329 27 27 chr11 88848840 88848987 -32994869 + Tigger6a DNA MER2_type 937 1083 0 9 1262 1204 49 14 0 chr11 88849558 88849702 -32994154 - B1_Mus2 SINE Alu 0 147 2 9 1262 1604 47 0 0 chr11 88850056 88850247 -32993609 - B2_Mm1a SINE B2 -1 192 2 9 1262 622 243 104 0 chr11 88850275 88850419 -32993437 - RSINE1 SINE B4 -4 161 3 9 1262 254 191 0 68 chr11 88850613 88850664 -32993192 + T-rich Low_complexity Low_complexity 22 70 0 9 1262 453 155 315 9 chr11 88850664 88850775 -32993081 - B1_Mm SINE Alu -1 146 2 9 1262 254 191 0 68 chr11 88850775 88850796 -32993060 + T-rich Low_complexity Low_complexity 3 21 0 9 1262 1484 43 32 5 chr11 88851237 88851425 -32992431 + B2_Mm2 SINE B2 3 195 0 9 1262 1436 79 26 0 chr11 88851434 88851623 -32992233 + B2_Mm2 SINE B2 2 195 0 9 1262 1140 52 0 0 chr11 88851670 88851806 -32992050 + B1_Mus1 SINE Alu 1 136 -12 9 1262 261 0 0 0 chr11 88851808 88851837 -32992019 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1262 424 226 0 0 chr11 88853007 88853091 -32990765 + PB1D10 SINE Alu 34 117 0 9 1262 234 0 0 0 chr11 88853095 88853121 -32990735 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 1262 285 29 0 0 chr11 88853121 88853154 -32990702 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1262 1240 79 27 33 chr11 88853155 88853338 -32990518 + B2_Mm2 SINE B2 1 182 -13 9 1262 1176 68 0 0 chr11 88853338 88853483 -32990373 + B1_Mm SINE Alu 1 146 -1 9 1262 353 236 28 0 chr11 88853674 88853746 -32990110 + B3A SINE B2 2 75 -123 9 1262 523 189 9 86 chr11 88853818 88853934 -32989922 - B1_Mur1 SINE Alu -8 141 35 9 1262 1440 54 22 0 chr11 88854197 88854220 -32989636 - B2_Mm1a SINE B2 -5 188 162 9 1262 207 0 0 0 chr11 88854220 88854243 -32989613 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 1262 1440 54 22 0 chr11 88854243 88854403 -32989453 - B2_Mm1a SINE B2 -32 161 2 9 1262 702 234 104 50 chr11 88854405 88854607 -32989249 - B3 SINE B2 -3 213 1 9 1262 288 241 64 92 chr11 88854650 88854803 -32989053 + B3 SINE B2 1 216 0 9 1262 2509 107 98 10 chr11 88855147 88855533 -32988323 + RLTR9B2 LTR ERVK 1 420 0 9 1262 831 256 72 10 chr11 88855779 88855988 -32987868 + ID_B1 SINE B4 3 224 0 9 1262 489 271 41 0 chr11 88856029 88856151 -32987705 + RSINE1 SINE B4 5 131 -34 9 1262 372 111 0 0 chr11 88856152 88856215 -32987641 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1262 1088 78 21 0 chr11 88856233 88856375 -32987481 - B1_Mus2 SINE Alu -1 146 2 9 1262 1255 47 0 0 chr11 88856396 88856544 -32987312 + B1_Mus1 SINE Alu 1 148 0 9 1262 257 184 92 0 chr11 88856544 88856631 -32987225 + L1M5 LINE L1 3722 3816 -2330 9 1262 211 300 100 0 chr11 88856812 88856872 -32986984 + PB1D10 SINE Alu 44 109 -8 9 1262 222 122 0 58 chr11 88856932 88856984 -32986872 + A-rich Low_complexity Low_complexity 2 50 0 9 1262 237 297 21 52 chr11 88858026 88858122 -32985734 + MIRb SINE MIR 97 189 -79 9 1262 193 293 0 0 chr11 88858396 88858437 -32985419 + MIR SINE MIR 220 260 -2 9 1262 1415 86 5 0 chr11 88858686 88858873 -32984983 + B2_Mm1a SINE B2 1 188 -5 9 1262 1277 73 45 11 chr11 88858884 88859063 -32984793 + B2_Mm2 SINE B2 3 187 -8 9 1262 236 186 0 23 chr11 88859167 88859211 -32984645 - ID2 SINE ID -40 43 1 9 1262 475 198 0 62 chr11 88859240 88859337 -32984519 - PB1D10 SINE Alu -26 91 1 9 1262 325 293 74 101 chr11 88859337 88859396 -32984460 - MT2B2 LTR ERVL -432 152 98 9 1262 326 122 0 68 chr11 88859952 88860040 -32983816 + G-rich Low_complexity Low_complexity 3 84 0 9 1262 494 219 0 8 chr11 88860207 88860325 -32983531 - B1F SINE Alu -3 117 5 9 1262 800 173 15 8 chr11 88862113 88862247 -32981609 - B1_Mur2 SINE Alu 0 149 15 9 1262 247 258 0 164 chr11 88862161 88862277 -32981579 - RLTR25A LTR ERVK -531 572 476 1 1262 1182 82 0 0 chr11 88862289 88862435 -32981421 + B1_Mus2 SINE Alu 2 147 0 1 1262 219 139 0 0 chr11 88862435 88862471 -32981385 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1262 186 255 0 38 chr11 88862997 88863050 -32980806 + MIR SINE MIR 68 118 -90 1 1262 1722 21 0 0 chr11 88863229 88863421 -32980435 + B2_Mm1a SINE B2 2 193 0 1 1262 688 171 100 8 chr11 88863466 88863596 -32980260 + B1F SINE Alu 6 147 -2 1 1262 488 258 50 0 chr11 88863611 88863731 -32980125 + RSINE1 SINE B4 4 129 -36 1 1262 246 62 0 0 chr11 88863749 88863781 -32980075 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1262 21 0 0 0 chr11 88864786 88864807 -32979049 + AT_rich Low_complexity Low_complexity 1 21 0 1 1262 189 0 0 0 chr11 88865746 88865767 -32978089 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1262 1144 102 0 0 chr11 88865767 88865914 -32977942 - B1_Mus2 SINE Alu 0 147 1 1 1262 217 278 67 40 chr11 88866207 88866282 -32977574 + ID4_ SINE ID 5 81 -2 1 1262 368 337 20 70 chr11 88866221 88866296 -32977560 + ID_B1 SINE B4 21 98 -126 1 1262 1139 29 43 21 chr11 88866296 88866436 -32977420 + B1_Mm SINE Alu 5 147 0 1 1262 368 337 20 70 chr11 88866436 88866561 -32977295 + ID_B1 SINE B4 99 211 -13 1 1262 671 205 0 43 chr11 88866565 88866703 -32977153 - B1_Mur2 SINE Alu 0 149 18 1 1263 406 250 104 8 chr11 88866867 88866992 -32976864 + RSINE1 SINE B4 12 148 -17 1 1263 307 273 69 90 chr11 88867000 88867040 -32976816 + MT2B LTR ERVL 123 261 -337 1 1263 438 240 47 19 chr11 88867027 88867133 -32976723 + B4 SINE B4 79 187 -105 1 1263 620 206 0 0 chr11 88867040 88867142 -32976714 + PB1D9 SINE Alu 6 107 -13 1 1263 207 256 0 0 chr11 88867146 88867189 -32976667 + GA-rich Low_complexity Low_complexity 3 45 0 1 1263 225 200 124 45 chr11 88867252 88867341 -32976515 - MLT1J LTR MaLR -158 347 252 1 1263 805 175 27 26 chr11 88867421 88867608 -32976248 - B3 SINE B2 0 195 8 1 1263 413 319 55 64 chr11 88867832 88868050 -32975806 - MLT1J LTR MaLR -261 251 36 1 1263 1295 118 43 0 chr11 88868052 88868238 -32975618 + B2_Mm2 SINE B2 2 195 0 1 1263 1104 29 0 14 chr11 88868251 88868389 -32975467 + B1_Mus2 SINE Alu 12 147 0 1 1263 813 201 20 7 chr11 88868493 88868643 -32975213 + RSINE1 SINE B4 3 154 -11 1 1263 742 142 269 34 chr11 88868703 88868878 -32974978 - B3 SINE B2 0 216 1 1 1263 289 320 0 13 chr11 88869075 88869151 -32974705 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 1 1263 338 254 0 0 chr11 88869094 88869157 -32974699 - ID4_ SINE ID -20 63 1 1 1263 285 222 42 0 chr11 88869157 88869229 -32974627 - Charlie5 DNA MER1_type -89 2535 2461 1 1263 329 246 0 14 chr11 88869233 88869303 -32974553 - ID4 SINE ID 0 83 15 1 1263 231 310 42 0 chr11 88869243 88869314 -32974542 - B4 SINE B4 -217 75 2 1 1263 333 0 0 0 chr11 88869392 88869429 -32974427 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1263 973 133 14 0 chr11 88869433 88869576 -32974280 - B1_Mur4 SINE Alu -5 145 1 1 1263 305 218 0 0 chr11 88869694 88869749 -32974107 - PB1 SINE Alu -42 85 31 1 1263 517 234 29 21 chr11 88869838 88869978 -32973878 - B1F SINE Alu -8 141 1 1 1263 868 132 22 14 chr11 88870029 88870167 -32973689 - B1_Mus1 SINE Alu -8 140 2 1 1263 290 67 22 0 chr11 88870327 88870372 -32973484 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1263 660 13 0 0 chr11 88870688 88870765 -32973091 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1263 346 315 161 38 chr11 88870871 88871253 -32972603 - MLT1E3 LTR MaLR -11 613 169 1 1263 183 42 0 0 chr11 88871627 88871651 -32972205 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1 1263 1298 91 28 11 chr11 88871651 88871828 -32972028 - B2_Mm2 SINE B2 -15 180 1 1 1263 414 0 0 0 chr11 88872592 88872638 -32971218 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1263 314 237 269 0 chr11 88872737 88872830 -32971026 - PB1D7 SINE Alu -2 118 1 1 1263 296 262 50 0 chr11 88873230 88873310 -32970546 - BC1_Mm scRNA scRNA -48 104 21 1 1263 324 0 0 0 chr11 88873327 88873363 -32970493 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1263 705 165 0 52 chr11 88873363 88873497 -32970359 - B1_Mur2 SINE Alu -12 137 11 1 1263 405 283 20 20 chr11 88873505 88873606 -32970250 - PB1D10 SINE Alu -10 107 7 1 1263 1117 260 40 14 chr11 88873614 88873910 -32969946 - MTE2a LTR MaLR 0 379 76 1 1263 762 185 49 74 chr11 88874056 88874219 -32969637 - RSINE1 SINE B4 -1 164 6 1 1263 336 24 0 0 chr11 88874975 88875016 -32968840 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1263 584 286 69 69 chr11 88875034 88875308 -32968548 - B4 SINE B4 -18 274 1 1 1263 241 287 67 42 chr11 88875308 88875428 -32968428 - MER106B DNA MER1_type -2 1057 935 1 1263 641 211 0 75 chr11 88875427 88875446 -32968410 + ID_B1 SINE B4 78 224 0 1 1263 973 136 0 0 chr11 88875446 88875586 -32968270 + B1_Mur2 SINE Alu 10 149 0 1 1263 322 261 66 21 chr11 88876127 88876271 -32967585 - L1ME2 LINE L1 -1 6163 6004 1 1263 309 209 0 0 chr11 88877169 88877236 -32966620 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 1 1263 294 271 0 0 chr11 88877295 88877413 -32966443 + (TGGA)n Simple_repeat Simple_repeat 3 120 0 1 1263 511 264 155 0 chr11 88878475 88878604 -32965252 + B1_Mur2 SINE Alu 1 149 0 1 1263 192 152 0 0 chr11 88878623 88878656 -32965200 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 1 1263 480 18 0 0 chr11 88881133 88881190 -32962666 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1263 287 333 69 90 chr11 88881446 88881634 -32962222 + MER21B LTR ERV1 341 524 -339 1 1263 267 219 229 70 chr11 88882034 88882191 -32961665 - B3A SINE B2 -16 182 1 1 1263 328 306 96 8 chr11 88882955 88883080 -32960776 + RSINE1 SINE B4 2 137 -28 1 1263 459 287 47 34 chr11 88883208 88883367 -32960489 + B3 SINE B2 3 163 -53 1 1263 272 215 165 0 chr11 88883756 88883835 -32960021 + RSINE1 SINE B4 3 94 -71 1 1263 805 207 0 20 chr11 88884055 88884203 -32959653 + B1_Mur3 SINE Alu 5 149 0 1 1263 363 78 0 0 chr11 88884281 88884332 -32959524 + (CAATA)n Simple_repeat Simple_repeat 2 52 0 1 1263 365 269 28 55 chr11 88884453 88884563 -32959293 - PB1D10 SINE Alu 0 117 12 1 1263 1066 202 162 71 chr11 88884563 88884915 -32958941 + ORR1C2 LTR MaLR 1 384 0 1 1263 978 41 0 0 chr11 88885122 88885245 -32958611 + B1_Mm SINE Alu 1 123 -24 1 1263 1090 74 42 24 chr11 88885240 88885406 -32958450 + B2_Mm2 SINE B2 27 195 0 1 1263 444 51 0 0 chr11 88885510 88885569 -32958287 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1263 411 107 163 41 chr11 88886061 88886177 -32957679 - B2_Mm2 SINE B2 -3 190 47 1 1263 1308 106 6 0 chr11 88886205 88886384 -32957472 - B2_Mm2 SINE B2 -14 181 2 1 1263 438 241 86 6 chr11 88886390 88886575 -32957281 - B1F SINE Alu 0 149 1 1 1263 1563 180 109 14 chr11 88886637 88886803 -32957053 + ORR1C2 LTR MaLR 1 187 -197 1 1263 207 0 0 0 chr11 88886803 88886826 -32957030 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1263 1563 180 109 14 chr11 88886826 88887009 -32956847 + ORR1C2 LTR MaLR 188 382 -2 1 1263 186 227 0 0 chr11 88887488 88887532 -32956324 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1263 625 297 6 24 chr11 88887548 88887717 -32956139 + B3A SINE B2 2 167 -31 1 1263 827 71 0 0 chr11 88887757 88887862 -32955994 + B1_Mus1 SINE Alu 37 141 -7 1 1263 237 33 0 0 chr11 88887862 88887892 -32955964 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 1263 1078 92 0 0 chr11 88887923 88888065 -32955791 + B2_Mm2 SINE B2 1 142 -53 1 1263 423 226 12 0 chr11 88888067 88888151 -32955705 + PB1D10 SINE Alu 18 102 -15 1 1263 1045 29 9 1 chr11 88888326 88888468 -32955388 - B1_Mm SINE Alu 0 149 6 1 1263 219 69 0 0 chr11 88888517 88888546 -32955310 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1 1263 842 234 40 20 chr11 88888546 88888747 -32955109 - B3 SINE B2 -9 207 3 1 1263 1502 64 0 21 chr11 88888765 88888957 -32954899 - B2_Mm2 SINE B2 -7 188 1 1 1263 25 0 0 0 chr11 88888959 88888984 -32954872 + AT_rich Low_complexity Low_complexity 1 25 0 1 1263 470 239 42 63 chr11 88889003 88889146 -32954710 - RSINE1 SINE B4 -22 143 4 1 1263 203 55 0 53 chr11 88889149 88889187 -32954669 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 1 1263 469 252 8 40 chr11 88889187 88889311 -32954545 - PB1D7 SINE Alu 0 120 1 1 1263 236 238 157 28 chr11 88889312 88889420 -32954436 - MLT1L LTR MaLR -35 575 454 1 1263 275 345 23 0 chr11 88889448 88889535 -32954321 - MLT1G1 LTR MaLR -70 509 421 1 1263 680 293 96 58 chr11 88889885 88890229 -32953627 - ORR1E LTR MaLR -2 357 1 1 1263 398 340 108 5 chr11 88890678 88890873 -32952983 + LTR75 LTR ERVL 248 462 -100 1 1263 650 227 14 14 chr11 88890854 88890997 -32952859 - ID_B1 SINE B4 -1 223 81 1 1263 398 246 9 0 chr11 88891061 88891175 -32952681 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 1263 216 0 0 0 chr11 88891175 88891199 -32952657 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1263 1168 52 0 0 chr11 88891199 88891335 -32952521 - B1_Mus2 SINE Alu -10 137 2 1 1263 768 162 49 7 chr11 88891452 88891595 -32952261 - B1_Mur4 SINE Alu 0 150 2 1 1263 314 313 30 20 chr11 88891623 88891724 -32952132 - RSINE1 SINE B4 -61 104 3 1 1263 270 259 113 26 chr11 88891892 88892007 -32951849 - ID_B1 SINE B4 -7 217 93 1 1263 2294 104 125 8 chr11 88892009 88892385 -32951471 + RLTR9B2 LTR ERVK 1 420 0 1 1263 276 100 0 0 chr11 88892410 88892450 -32951406 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 1 1263 590 208 52 37 chr11 88892811 88892946 -32950910 - B1_Mur1 SINE Alu 0 149 13 1 1263 750 252 0 66 chr11 88892973 88892984 -32950872 - RSINE1 SINE B4 -8 157 149 1 1263 245 75 0 24 chr11 88892984 88893025 -32950831 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1263 750 252 0 66 chr11 88893025 88893179 -32950677 - RSINE1 SINE B4 -17 148 3 1 1263 347 320 0 49 chr11 88893214 88893316 -32950540 + B4 SINE B4 5 101 -191 1 1263 341 85 0 0 chr11 88893327 88893374 -32950482 + RLTR9B2 LTR ERVK 374 420 0 1 1263 547 305 95 39 chr11 88893374 88893550 -32950306 + B4 SINE B4 116 292 0 1 1263 556 79 0 0 chr11 88893688 88893764 -32950092 + BC1_Mm scRNA scRNA 1 76 -76 1 1263 633 270 39 39 chr11 88893798 88893979 -32949877 - B3A SINE B2 -16 182 2 1 1263 285 208 205 102 chr11 88894058 88894224 -32949632 + MTD LTR MaLR 79 261 -158 1 1263 235 257 257 0 chr11 88894287 88894400 -32949456 + MTD LTR MaLR 268 409 -10 1 1263 1137 68 7 20 chr11 88894621 88894771 -32949085 - B1_Mus1 SINE Alu 0 148 1 1 1263 724 204 0 81 chr11 88895401 88895561 -32948295 - B1_Mur1 SINE Alu 0 149 3 1 1263 309 305 14 109 chr11 88895438 88895585 -32948271 - B4 SINE B4 -88 204 72 1 1263 650 250 35 23 chr11 88895578 88895750 -32948106 - B4A SINE B4 -118 174 1 1 1263 536 145 188 31 chr11 88895771 88895899 -32947957 - B1_Mus1 SINE Alu 0 148 1 1 1263 319 244 89 0 chr11 88895923 88895995 -32947861 - ORR1D1 LTR MaLR -128 242 163 1 1263 1190 92 0 24 chr11 88895995 88896163 -32947693 + B2_Mm2 SINE B2 1 164 -31 1 1263 475 175 105 32 chr11 88896188 88896312 -32947544 - ORR1D1 LTR MaLR -237 137 5 1 1263 1139 75 0 7 chr11 88897596 88897743 -32946113 + B1_Mus1 SINE Alu 2 147 -1 1 1263 517 123 0 12 chr11 88897849 88897931 -32945925 + B3A SINE B2 2 82 -116 1 1263 326 181 133 41 chr11 88897981 88898079 -32945777 - PB1D9 SINE Alu -9 111 5 1 1263 245 191 21 0 chr11 88898362 88898409 -32945447 - PB1D10 SINE Alu -7 110 63 1 1263 28 0 0 0 chr11 88898660 88898688 -32945168 + AT_rich Low_complexity Low_complexity 1 28 0 1 1263 1444 88 16 0 chr11 88898693 88898885 -32944971 + B2_Mm2 SINE B2 1 195 0 1 1263 866 160 44 19 chr11 88898886 88899033 -32944823 + B2_Mm2 SINE B2 30 181 -14 1 1263 1216 48 0 0 chr11 88899033 88899179 -32944677 - B1_Mus2 SINE Alu 0 147 2 1 1263 866 160 44 19 chr11 88899179 88899190 -32944666 + B2_Mm2 SINE B2 182 192 -3 1 1263 232 296 28 14 chr11 88901391 88901463 -32942393 + ID4_ SINE ID 4 76 -7 1 1263 180 0 0 0 chr11 88901464 88901484 -32942372 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1263 725 102 15 66 chr11 88902260 88902376 -32941480 + BC1_Mm scRNA scRNA 1 108 -44 1 1263 1286 34 0 0 chr11 88902376 88902523 -32941333 + B1_Mm SINE Alu 1 147 0 1 1263 725 102 15 66 chr11 88902523 88902543 -32941313 + BC1_Mm scRNA scRNA 109 130 -22 1 1263 546 67 0 0 chr11 88902962 88903037 -32940819 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1263 337 262 83 9 chr11 88903176 88903284 -32940572 + PB1D10 SINE Alu 2 117 0 1 1263 330 227 127 0 chr11 88903338 88903433 -32940423 + PB1D10 SINE Alu 1 111 -9 1 1263 331 226 29 106 chr11 88903834 88903938 -32939918 - B4 SINE B4 -194 98 3 1 1263 457 220 40 0 chr11 88904029 88904129 -32939727 - B3 SINE B2 -8 208 105 1 1263 184 355 83 65 chr11 88905019 88905188 -32938668 + MIRb SINE MIR 47 218 -50 1 1263 753 222 60 60 chr11 88905195 88905411 -32938445 + B3 SINE B2 1 216 0 1 1263 671 231 79 24 chr11 88905948 88906112 -32937744 - ID_B1 SINE B4 0 224 52 1 1263 2841 133 108 64 chr11 88906112 88906657 -32937199 + RLTR25B LTR ERVK 2 570 -458 1 1263 953 92 0 0 chr11 88906669 88906799 -32937057 - B1_Mus2 SINE Alu 0 147 18 1 1263 1346 75 38 0 chr11 88906814 88907000 -32936856 - B2_Mm1a SINE B2 0 193 1 1 1263 634 167 56 232 chr11 88907001 88907069 -32936787 + RLTR25B LTR ERVK 558 619 -409 1 1263 1595 32 5 0 chr11 88907069 88907254 -32936602 + B2_Mm1t SINE B2 2 187 -6 1 1263 634 167 56 232 chr11 88907254 88907292 -32936564 + RLTR25B LTR ERVK 620 622 -406 1 1263 750 108 148 16 chr11 88907292 88907414 -32936442 + B1_Mus2 SINE Alu 1 138 -9 1 1263 634 167 56 232 chr11 88907414 88907556 -32936300 + RLTR25B LTR ERVK 623 762 -266 1 1263 302 188 145 0 chr11 88907554 88907623 -32936233 + RLTR25B LTR ERVK 1025 1103 0 1 1263 232 268 0 18 chr11 88907623 88907680 -32936176 - ID SINE ID -167 57 2 1 1263 261 238 128 23 chr11 88907682 88907768 -32936088 - PB1D10 SINE Alu 0 117 23 1 1263 216 0 0 0 chr11 88907863 88907887 -32935969 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1263 1161 49 28 0 chr11 88907887 88908031 -32935825 - B1_Mus1 SINE Alu 0 148 1 1 1263 1146 208 14 0 chr11 88908235 88908447 -32935409 - B3 SINE B2 0 216 2 1 1263 2195 182 35 38 chr11 88908553 88909005 -32934851 + RLTR18-int LTR ERVK 4880 5330 -31 1 1263 1704 217 61 63 chr11 88909033 88909476 -32934380 + RLTR18B LTR ERVK 63 504 -8 1 1263 555 225 155 0 chr11 88909598 88909727 -32934129 + B1_Mur3 SINE Alu 1 149 0 1 1263 208 228 0 0 chr11 88909728 88909785 -32934071 + A-rich Low_complexity Low_complexity 2 58 0 1 1263 525 246 8 25 chr11 88911416 88911537 -32932319 - PB1D7 SINE Alu 0 120 2 1 1263 284 292 122 7 chr11 88912265 88912413 -32931443 - MIRb SINE MIR -94 174 10 1 1263 462 280 9 9 chr11 88912959 88913067 -32930789 - PB1D10 SINE Alu -7 110 3 1 1263 321 244 83 90 chr11 88913067 88913114 -32930742 - MT2B2 LTR ERVL -426 158 113 1 1263 791 281 137 19 chr11 88913145 88913569 -32930287 - L1MB8 LINE L1 -54 6124 5651 1 1263 229 310 253 0 chr11 88914039 88914097 -32929759 - B4 SINE B4 0 292 95 1 1263 439 220 34 0 chr11 88914097 88914197 -32929659 - PB1D9 SINE Alu -7 113 11 1 1263 513 329 84 19 chr11 88914203 88914417 -32929439 - B4 SINE B4 -64 228 1 1 1263 1109 96 0 14 chr11 88914459 88914607 -32929249 + B1_Mus1 SINE Alu 1 146 -2 1 1263 1254 34 0 0 chr11 88914642 88914788 -32929068 - B1_Mus1 SINE Alu -2 146 1 1 1263 350 164 0 0 chr11 88914816 88914871 -32928985 + B3A SINE B2 40 94 -104 1 1263 687 192 15 23 chr11 88915426 88915559 -32928297 - B1_Mus2 SINE Alu -14 133 2 1 1263 1205 61 0 0 chr11 88915755 88915902 -32927954 - B1_Mus2 SINE Alu 0 147 1 1 1263 523 224 221 12 chr11 88916210 88916382 -32927474 - B3 SINE B2 -8 208 1 1 1263 401 328 102 0 chr11 88916392 88916520 -32927336 - B1F2 SINE Alu -7 142 2 1 1263 552 166 167 18 chr11 88917191 88917364 -32926492 - B3 SINE B2 0 195 1 1 1263 271 336 74 9 chr11 88917889 88917997 -32925859 - PB1D10 SINE Alu -2 115 1 1 1263 241 338 53 86 chr11 88917997 88918079 -32925777 - ID SINE ID -137 87 11 1 1263 724 147 291 12 chr11 88918179 88918344 -32925512 - B3 SINE B2 -5 211 1 1 1263 1398 35 17 0 chr11 88918363 88918536 -32925320 - B2_Mm1a SINE B2 -17 176 1 1 1263 1152 55 0 7 chr11 88918542 88918690 -32925166 - B1_Mus1 SINE Alu -1 147 1 1 1263 611 255 130 0 chr11 88918943 88919127 -32924729 + B3 SINE B2 2 209 -7 1 1263 912 18 0 0 chr11 88919405 88919515 -32924341 - B1_Mus1 SINE Alu 0 148 39 1 1263 902 256 9 36 chr11 88919533 88919752 -32924104 + B3 SINE B2 3 215 -1 1 1263 247 370 111 0 chr11 88919783 88919891 -32923965 + MER94 DNA AcHobo 1 120 -14 1 1263 515 299 70 47 chr11 88919921 88920093 -32923763 + B3A SINE B2 7 182 -16 1 1263 676 239 57 24 chr11 88920873 88921083 -32922773 + ID_B1 SINE B4 1 217 -7 1 1263 185 35 69 0 chr11 88921087 88921116 -32922740 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1263 32 0 0 0 chr11 88922638 88922670 -32921186 + AT_rich Low_complexity Low_complexity 1 32 0 1 1263 313 234 0 30 chr11 88922684 88922750 -32921106 + B1_Mur2 SINE Alu 46 109 -40 1 1263 210 106 33 56 chr11 88923157 88923195 -32920661 + A-rich Low_complexity Low_complexity 3 39 0 1 1263 1197 41 7 7 chr11 88923195 88923342 -32920514 + B1_Mm SINE Alu 1 147 0 1 1263 210 106 33 56 chr11 88923342 88923393 -32920463 + A-rich Low_complexity Low_complexity 40 90 0 1 1263 334 243 86 0 chr11 88923579 88923649 -32920207 + RSINE1 SINE B4 3 78 -87 1 1263 27 29 0 0 chr11 88923691 88923725 -32920131 + AT_rich Low_complexity Low_complexity 1 34 0 1 1263 1403 76 11 0 chr11 88923730 88923914 -32919942 + B2_Mm1t SINE B2 1 186 -7 1 1263 248 224 89 30 chr11 88924074 88924135 -32919721 - RMER4A LTR ERVK -184 282 222 1 1263 2875 169 73 116 chr11 88924135 88924679 -32919177 - RLTR33 LTR ERVK 0 678 95 1 1263 1223 41 0 0 chr11 88924679 88924825 -32919031 + B1_Mus1 SINE Alu 1 146 -2 1 1263 2875 169 73 116 chr11 88924825 88924867 -32918989 - RLTR33 LTR ERVK -584 94 94 1 1263 189 0 0 0 chr11 88924867 88924888 -32918968 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 1 1263 2875 169 73 116 chr11 88924888 88925008 -32918848 - RLTR33 LTR ERVK -584 94 1 1 1263 248 224 89 30 chr11 88925008 88925047 -32918809 - RMER4A LTR ERVK -245 221 178 1 1263 1487 121 17 17 chr11 88925168 88925403 -32918453 - RMER4A LTR ERVK -227 239 5 1 1263 470 239 131 0 chr11 88925523 88925653 -32918203 + B1F SINE Alu 3 149 0 1 1263 218 277 13 167 chr11 88925750 88925828 -32918028 - ID4_ SINE ID -16 67 2 1 1263 851 196 0 26 chr11 88925946 88926098 -32917758 - B1_Mus1 SINE Alu 0 148 1 1 1263 840 170 35 0 chr11 88926232 88926373 -32917483 - B1_Mus1 SINE Alu 0 148 3 1 1263 356 296 20 0 chr11 88926618 88926716 -32917140 + B4 SINE B4 1 100 -192 1 1263 888 154 108 6 chr11 88926733 88926890 -32916966 + B3 SINE B2 39 211 -5 1 1263 393 253 348 7 chr11 88926907 88927053 -32916803 + B4 SINE B4 83 278 -14 1 1263 342 0 0 0 chr11 88927066 88927104 -32916752 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1263 420 208 0 0 chr11 88928003 88928099 -32915757 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1263 305 292 119 94 chr11 88928099 88928258 -32915598 - RSINE1 SINE B4 0 165 3 1 1263 1006 105 12 6 chr11 88928278 88928441 -32915415 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 1 1263 512 194 107 0 chr11 88928454 88928557 -32915299 - B1_Mus1 SINE Alu -34 114 1 1 1263 303 252 137 40 chr11 88928557 88928572 -32915284 - B4 SINE B4 -84 177 73 1 1263 487 220 73 0 chr11 88929263 88929372 -32914484 - ID_B1 SINE B4 0 224 108 1 1263 242 321 101 36 chr11 88929264 88929403 -32914453 - B1_Mus1 SINE Alu 0 148 1 1 1263 318 26 0 0 chr11 88929533 88929572 -32914284 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1263 295 287 106 0 chr11 88929572 88929666 -32914190 - PB1D10 SINE Alu -13 104 1 1 1263 267 239 130 0 chr11 88929592 88929684 -32914172 - B4A SINE B4 -124 168 65 1 1263 732 279 180 7 chr11 88929948 88930248 -32913608 + RCHARR1 DNA MER1_type 4 355 -619 1 1263 620 254 0 44 chr11 88930248 88930384 -32913472 + RSINE1 SINE B4 2 131 -34 1 1263 332 256 12 0 chr11 88930531 88930613 -32913243 + ID4 SINE ID 1 83 0 1 1263 181 237 0 0 chr11 88931166 88931204 -32912652 - L2 LINE L2 -360 3059 3022 1 1263 459 192 13 0 chr11 88931416 88931494 -32912362 - PB1D9 SINE Alu -10 110 32 1 1263 276 256 100 25 chr11 88931441 88931521 -32912335 - MT2B LTR ERVL -361 240 155 1 1263 219 270 93 13 chr11 88931618 88931693 -32912163 - PB1D10 SINE Alu -11 106 26 1 1263 957 135 7 33 chr11 88931754 88931907 -32911949 - B1_Mur4 SINE Alu 0 150 2 1 1263 1262 48 0 0 chr11 88931937 88932084 -32911772 + B1_Mm SINE Alu 1 147 0 1 1263 233 57 0 28 chr11 88932316 88932352 -32911504 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1263 273 295 171 0 chr11 88932389 88932494 -32911362 - RSINE1 SINE B4 -21 144 22 1 1263 386 204 0 163 chr11 88932497 88932626 -32911230 + MT2B LTR ERVL 152 259 -342 1 1263 700 155 0 58 chr11 88932511 88932648 -32911208 + B1_Mur4 SINE Alu 1 129 -21 1 1263 305 324 29 14 chr11 88932996 88933134 -32910722 - ID_B1 SINE B4 -1 223 84 1 1263 1190 58 0 0 chr11 88933323 88933462 -32910394 + B1_Mm SINE Alu 1 139 -8 1 1263 367 206 29 29 chr11 88933484 88933589 -32910267 - Lx9 LINE L1 -6 7638 7534 1 1263 645 237 106 20 chr11 88933612 88933810 -32910046 - B3 SINE B2 0 216 2 1 1263 591 246 9 0 chr11 88934001 88934115 -32909741 - B1_Mur2 SINE Alu -32 117 3 1 1263 185 319 134 50 chr11 88934230 88934349 -32909507 + MIR SINE MIR 22 150 -58 1 1263 561 30 0 0 chr11 88934451 88934518 -32909338 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1263 356 0 23 0 chr11 88934631 88934675 -32909181 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1263 749 212 18 42 chr11 88934736 88934903 -32908953 + RSINE1 SINE B4 3 165 0 1 1263 306 87 0 0 chr11 88935709 88935755 -32908101 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1263 569 232 124 55 chr11 88935769 88935970 -32907886 + ID_B1 SINE B4 2 216 -8 1 1263 339 44 0 0 chr11 88935977 88936022 -32907834 + (CAAG)n Simple_repeat Simple_repeat 2 46 0 1 1263 730 256 47 61 chr11 88936868 88937080 -32906776 + MTE2b LTR MaLR 1 209 -170 1 1263 25 31 0 0 chr11 88937086 88937118 -32906738 + AT_rich Low_complexity Low_complexity 1 32 0 1 1263 1708 232 73 18 chr11 88937133 88937208 -32906648 - Lx9 LINE L1 -63 7581 7497 1 1263 484 220 99 25 chr11 88937208 88937329 -32906527 - B1_Mur3 SINE Alu -15 134 5 1 1263 1708 232 73 18 chr11 88937329 88937347 -32906509 - Lx9 LINE L1 -148 7496 7475 1 1263 450 0 0 0 chr11 88937347 88937397 -32906459 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1263 1708 232 73 18 chr11 88937397 88937798 -32906058 - Lx9 LINE L1 -170 7474 7060 1 1263 521 271 142 0 chr11 88937798 88937953 -32905903 + MTE2b LTR MaLR 198 374 -5 1 1263 1410 87 16 0 chr11 88938310 88938494 -32905362 - B2_Mm2 SINE B2 -8 187 1 1 1263 321 266 38 0 chr11 88938520 88938599 -32905257 + ID4 SINE ID 2 83 0 1 1263 558 197 32 49 chr11 88938724 88938847 -32905009 - RSINE1 SINE B4 -29 136 16 1 1263 250 333 39 29 chr11 88938904 88938934 -32904922 - ID_B1 SINE B4 -114 110 8 1 1263 282 296 0 14 chr11 88938934 88939006 -32904850 - ID4 SINE ID -5 78 8 1 1263 989 161 0 0 chr11 88939511 88939660 -32904196 - B1_Mur3 SINE Alu 0 149 1 1 1263 313 340 85 85 chr11 88941329 88941634 -32902222 + ORR1E LTR MaLR 5 309 -50 1 1263 439 129 317 13 chr11 88941626 88941762 -32902094 - B2_Mm2 SINE B2 -8 187 15 1 1263 1279 107 22 0 chr11 88941857 88942035 -32901821 - B2_Mm2 SINE B2 -13 182 1 1 1263 598 277 40 50 chr11 88942075 88942273 -32901583 - B3A SINE B2 -1 197 2 1 1263 383 330 64 21 chr11 88942577 88942812 -32901044 + L2 LINE L2 2296 2540 -879 1 1263 1456 20 10 0 chr11 88943016 88943417 -32900439 + (CTGTG)n Simple_repeat Simple_repeat 1 405 0 1 1263 639 165 304 41 chr11 88943662 88943833 -32900023 + B3 SINE B2 1 216 0 1 1263 705 24 0 0 chr11 88943965 88944048 -32899808 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1263 762 208 23 0 chr11 88944048 88944178 -32899678 - B1_Mur1 SINE Alu -14 135 3 1 1263 2636 72 125 3 chr11 88944178 88944539 -32899317 - MTB_Mm LTR MaLR 0 407 3 1 1263 471 287 36 65 chr11 88944587 88944755 -32899101 - RSINE1 SINE B4 0 165 3 1 1263 1251 40 0 0 chr11 88944780 88944928 -32898928 - B1_Mus1 SINE Alu 0 148 1 1 1263 431 93 0 12 chr11 88944956 88945067 -32898789 - B2_Mm2 SINE B2 -3 192 47 1 1263 752 187 131 28 chr11 88945108 88945284 -32898572 + ORR1C2 LTR MaLR 167 360 -24 1 1263 298 303 0 0 chr11 88945281 88945357 -32898499 + Tigger7 DNA MER2_type 2185 2260 -231 1 1263 411 173 0 0 chr11 88945363 88945444 -32898412 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1263 1285 251 7 7 chr11 88945518 88945799 -32898057 - B4 SINE B4 -1 291 11 1 1263 724 306 15 5 chr11 88945947 88946144 -32897712 + Tigger7 DNA MER2_type 2293 2487 -4 1 1263 42 48 0 0 chr11 88946290 88946353 -32897503 + AT_rich Low_complexity Low_complexity 1 63 0 1 1263 204 228 0 0 chr11 88946358 88946415 -32897441 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1263 409 211 40 0 chr11 88946419 88946495 -32897361 - B3A SINE B2 -118 80 2 1 1263 191 320 12 96 chr11 88947886 88947969 -32895887 - L2b LINE L2 0 3375 3300 1 1263 258 333 27 0 chr11 88948009 88948084 -32895772 + FLAM_A SINE Alu 2 78 -217 1 1263 438 20 0 0 chr11 88948181 88948232 -32895624 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 1263 355 215 0 37 chr11 88948277 88948359 -32895497 - Lx8 LINE L1 -1576 5897 5819 1 1263 494 257 34 34 chr11 88948487 88948636 -32895220 - B1F SINE Alu 0 149 1 1 1263 636 246 159 18 chr11 88948732 88948902 -32894954 - B4A SINE B4 -49 243 50 1 1263 1015 88 0 20 chr11 88948933 88949084 -32894772 - B2_Mm2 SINE B2 0 195 48 1 1263 296 113 0 36 chr11 88949087 88949142 -32894714 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 1 1263 972 144 7 20 chr11 88949142 88949291 -32894565 - B1_Mur3 SINE Alu -1 148 2 1 1263 227 306 0 0 chr11 88949643 88949705 -32894151 + LTR33A_ LTR ERVL 72 133 -398 1 1263 574 175 29 10 chr11 88949734 88949838 -32894018 + B1_Mur2 SINE Alu 1 106 -43 1 1263 810 173 69 64 chr11 88950217 88950390 -32893466 - B3 SINE B2 -42 174 1 1 1263 815 254 10 15 chr11 88951188 88951384 -32892472 - ID_B1 SINE B4 -29 195 1 1 1263 551 108 11 0 chr11 88951688 88951781 -32892075 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1263 207 0 0 0 chr11 88951907 88951930 -32891926 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1263 1269 41 0 0 chr11 88951930 88952077 -32891779 - B1_Mm SINE Alu 0 147 1 1 1263 1295 107 0 21 chr11 88952078 88952269 -32891587 - B2_Mm2 SINE B2 -7 188 2 1 1263 383 149 14 0 chr11 88952329 88952403 -32891453 + CT-rich Low_complexity Low_complexity 2 76 0 1 1263 964 115 72 0 chr11 88952404 88952543 -32891313 - B1_Mur4 SINE Alu 0 150 2 1 1263 2090 94 74 221 chr11 88952695 88953252 -32890604 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1263 925 222 0 31 chr11 88953347 88953542 -32890314 + B3A SINE B2 10 198 0 1 1263 1032 151 0 0 chr11 88953637 88953910 -32889946 + (CCA)n Simple_repeat Simple_repeat 1 273 0 1 1263 234 91 0 0 chr11 88953922 88953955 -32889901 + (CCA)n Simple_repeat Simple_repeat 1 33 0 1 1263 758 194 158 21 chr11 88954463 88954578 -32889278 - B3 SINE B2 0 216 82 1 1263 507 17 0 0 chr11 88954578 88954638 -32889218 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1263 758 194 158 21 chr11 88954638 88954712 -32889144 - B3 SINE B2 -135 81 1 1 1263 556 295 60 7 chr11 88954736 88954886 -32888970 + RSINE1 SINE B4 8 165 0 1 1263 275 311 155 22 chr11 88954886 88954916 -32888940 + B3 SINE B2 7 210 -6 1 1263 733 58 10 0 chr11 88955395 88955498 -32888358 + ORR1B1 LTR MaLR 1 104 -290 1 1263 1307 193 62 1 chr11 88955498 88955762 -32888094 - RMER19A LTR ERVK 0 737 413 1 1263 348 43 0 0 chr11 88955772 88955818 -32888038 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1263 1236 48 0 0 chr11 88955896 88956041 -32887815 - B1_Mus2 SINE Alu 0 147 3 1 1263 306 272 40 107 chr11 88956373 88956408 -32887448 + ORR1E LTR MaLR 10 44 -315 1 1263 759 234 38 62 chr11 88956408 88956618 -32887238 + ID_B1 SINE B4 2 206 -18 1 1263 306 272 40 107 chr11 88956618 88956759 -32887097 + ORR1E LTR MaLR 45 174 -185 1 1263 240 250 71 0 chr11 88957133 88957189 -32886667 - L2b LINE L2 -33 3393 3334 1 1263 276 30 0 0 chr11 88957195 88957228 -32886628 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1263 757 303 90 16 chr11 88957242 88957487 -32886369 - B4A SINE B4 -26 266 4 1 1263 198 103 0 0 chr11 88957504 88957533 -32886323 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 1 1263 471 289 8 16 chr11 88957556 88957679 -32886177 - RSINE1 SINE B4 0 165 44 1 1263 1041 264 81 14 chr11 88957779 88958198 -32885658 - L1MB5 LINE L1 -137 6037 5591 1 1263 797 228 72 138 chr11 88958264 88958569 -32885287 - B4 SINE B4 -6 286 2 1 1263 1172 48 13 39 chr11 88958599 88958752 -32885104 - B1_Mur4 SINE Alu 0 150 2 1 1263 576 284 67 48 chr11 88958754 88959068 -32884788 - L1MB5 LINE L1 -573 5607 5288 1 1263 1310 41 58 6 chr11 88959127 88959298 -32884558 + B2_Mm2 SINE B2 10 189 -6 1 1263 282 306 30 20 chr11 88959317 88959417 -32884439 + MIR SINE MIR 73 173 -89 1 1263 490 309 44 27 chr11 88959589 88959790 -32884066 - L2b LINE L2 -247 3179 2972 1 1263 682 254 0 0 chr11 88959981 88960123 -32883733 + RSINE1 SINE B4 11 152 -13 1 1263 214 237 45 135 chr11 88960025 88960181 -32883675 + B2_Mm2 SINE B2 54 195 0 1 1263 255 353 20 0 chr11 88960792 88960894 -32882962 + MIRb SINE MIR 105 208 -60 1 1263 461 234 57 188 chr11 88961005 88961341 -32882515 - B4A SINE B4 0 292 1 1 1263 1386 0 0 0 chr11 88961394 88961548 -32882308 + (TTTTC)n Simple_repeat Simple_repeat 4 157 0 1 1263 1204 56 0 0 chr11 88961549 88961692 -32882164 - B1_Mm SINE Alu -4 143 1 1 1263 181 0 69 0 chr11 88962091 88962120 -32881736 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1263 282 116 0 0 chr11 88962133 88962176 -32881680 + (CAG)n Simple_repeat Simple_repeat 3 45 0 1 1263 1375 84 10 20 chr11 88963024 88963219 -32880637 - B2_Mm2 SINE B2 -1 194 2 1 1263 454 255 0 52 chr11 88963955 88964071 -32879785 + PB1D10 SINE Alu 1 110 -7 1 1263 719 163 95 15 chr11 88964092 88964229 -32879627 + B1_Mus1 SINE Alu 1 148 0 1 1263 402 21 0 0 chr11 88964230 88964277 -32879579 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1263 220 354 0 0 chr11 88964277 88964342 -32879514 + ID4_ SINE ID 15 79 -4 1 1263 369 0 0 0 chr11 88965100 88965141 -32878715 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1263 197 249 93 13 chr11 88965159 88965240 -32878616 - L2c LINE L2 -240 3147 3060 1 1263 490 333 48 38 chr11 88965303 88965370 -32878486 - B4A SINE B4 0 292 123 1 1263 545 242 55 0 chr11 88965370 88965498 -32878358 - B1_Mur2 SINE Alu -6 143 9 1 1263 490 333 48 38 chr11 88965498 88965512 -32878344 - B4A SINE B4 0 122 82 1 1263 728 285 46 76 chr11 88965899 88965939 -32877917 - B4A SINE B4 -37 255 220 1 1263 1278 102 16 26 chr11 88965939 88966131 -32877725 - B2_Mm2 SINE B2 -5 190 1 1 1263 728 285 46 76 chr11 88966131 88966352 -32877504 - B4A SINE B4 -73 219 2 1 1263 281 356 67 0 chr11 88966558 88966662 -32877194 - MER81 DNA AcHobo -2 112 2 1 1263 1572 194 108 104 chr11 88966907 88967424 -32876432 - RLTR11A LTR ERVK -9 519 1 1 1263 429 285 66 51 chr11 88967525 88967743 -32876113 - MIR SINE MIR -26 242 25 1 1263 362 113 0 61 chr11 88968156 88968222 -32875634 + B3 SINE B2 1 62 -154 1 1263 584 224 236 0 chr11 88968329 88968494 -32875362 + ID_B1 SINE B4 1 204 -20 1 1263 215 283 0 0 chr11 88968865 88968911 -32874945 + L3b LINE CR1 169 214 -268 1 1263 25 0 0 0 chr11 88969652 88969677 -32874179 + AT_rich Low_complexity Low_complexity 1 25 0 1 1263 275 266 51 0 chr11 88970920 88970999 -32872857 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 1 1263 2273 107 0 3 chr11 88971014 88971333 -32872523 + ORR1A3 LTR MaLR 1 318 -8 1 1263 432 329 3 22 chr11 88971337 88971609 -32872247 + (TGGA)n Simple_repeat Simple_repeat 1 266 0 1 1263 180 276 86 0 chr11 88971736 88971794 -32872062 + MIRm SINE MIR 4 66 -210 1 1263 239 180 0 74 chr11 88973062 88973104 -32870752 - MLT2B2 LTR ERVL 0 562 522 1 1263 315 0 0 0 chr11 88973104 88973139 -32870717 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1263 239 180 0 74 chr11 88973139 88973150 -32870706 - MLT2B2 LTR ERVL -41 521 513 1 1263 661 198 16 2 chr11 88973230 88973367 -32870489 - B1_Mur2 SINE Alu 0 150 9 1 1263 365 171 24 160 chr11 88973270 88973395 -32870461 - MT2B LTR ERVL -343 258 151 1 1263 219 304 0 0 chr11 88973494 88973550 -32870306 + L2a LINE L2 3369 3424 -2 1 1263 1261 54 0 0 chr11 88974397 88974545 -32869311 + B1_Mus1 SINE Alu 1 148 0 1 1263 218 39 57 38 chr11 88974545 88974598 -32869258 + (CAAAAA)n Simple_repeat Simple_repeat 6 59 0 1 1263 651 103 0 0 chr11 88974925 88975022 -32868834 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 1 1263 308 306 47 24 chr11 88975230 88975357 -32868499 - L3b LINE CR1 -122 360 231 1 1263 570 243 9 0 chr11 88976393 88976500 -32867356 - RSINE1 SINE B4 -33 132 25 1 1263 873 312 143 28 chr11 88977354 88978037 -32865819 + MLT1H-int LTR MaLR 645 1406 -3 1 1263 229 354 37 0 chr11 88979158 88979240 -32864616 + MER91A DNA Tip100 1 85 -111 1 1263 270 0 0 0 chr11 88979450 88979480 -32864376 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 1 1263 304 321 0 69 chr11 88979480 88979567 -32864289 - ID SINE ID -141 83 3 1 1263 338 151 0 0 chr11 88979576 88979629 -32864227 - B1F SINE Alu -9 140 88 1 1263 756 80 9 26 chr11 88979790 88979905 -32863951 + BC1_Mm scRNA scRNA 2 114 -38 1 1263 1000 271 26 79 chr11 88980348 88980653 -32863203 + B4 SINE B4 2 290 -2 1 1263 1684 196 73 85 chr11 88980713 88981040 -32862816 + MTD LTR MaLR 1 346 -73 1 1263 225 0 0 0 chr11 88981040 88981065 -32862791 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1263 1684 196 73 85 chr11 88981065 88981161 -32862695 + MTD LTR MaLR 347 419 0 1 1263 231 36 0 0 chr11 88981817 88981845 -32862011 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1263 1232 50 0 0 chr11 88981846 88981987 -32861869 - B1_Mus2 SINE Alu -6 141 1 1 1263 2001 254 73 45 chr11 88982001 88982103 -32861753 - Lx9 LINE L1 -24 7620 7542 1 1263 1233 41 7 0 chr11 88982103 88982248 -32861608 - B1_Mm SINE Alu -1 146 1 1 1263 2001 254 73 45 chr11 88982248 88982789 -32861067 - Lx9 LINE L1 -103 7541 6959 1 1263 245 200 0 0 chr11 88982782 88982827 -32861029 - L1_Rod LINE L1 -7061 111 67 1 1263 557 218 22 75 chr11 88982861 88982995 -32860861 + RSINE1 SINE B4 5 131 -34 1 1263 726 164 48 48 chr11 88983377 88983524 -32860332 - B1_Mus1 SINE Alu 0 148 2 1 1263 604 235 78 47 chr11 88983531 88983723 -32860133 - B3A SINE B2 0 198 1 1 1263 835 140 0 29 chr11 88984474 88984614 -32859242 - B1_Mur3 SINE Alu -13 136 1 1 1263 284 275 28 56 chr11 88984614 88984722 -32859134 - MER5A1 DNA MER1_type -33 133 29 1 1263 207 69 0 0 chr11 88984819 88984848 -32859008 + (TGGA)n Simple_repeat Simple_repeat 3 31 0 1 1263 300 53 0 0 chr11 88985609 88985647 -32858209 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 1 1263 198 343 95 0 chr11 88986125 88986230 -32857626 - MIRb SINE MIR -122 146 32 1 1263 1392 35 104 0 chr11 88986579 88986752 -32857104 + B2_Mm1t SINE B2 2 192 -1 1 1263 263 324 33 75 chr11 88987692 88987812 -32856044 - PB1D7 SINE Alu -5 115 1 1 1263 342 289 120 66 chr11 88988388 88988629 -32855227 - ORR1E LTR MaLR -9 350 97 1 1263 188 163 0 23 chr11 88989775 88989819 -32854037 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 1 1263 231 269 0 20 chr11 88989924 88990018 -32853838 - MIRc SINE MIR -70 198 109 1 1263 279 0 0 0 chr11 88990158 88990189 -32853667 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1263 522 0 0 0 chr11 88991013 88991071 -32852785 + (TCCC)n Simple_repeat Simple_repeat 2 59 0 1 1263 688 139 0 129 chr11 88991071 88991211 -32852645 - B1_Mur4 SINE Alu -17 133 12 1 1263 218 311 0 83 chr11 88991097 88991230 -32852626 - B4 SINE B4 -94 198 77 1 1263 414 254 203 8 chr11 88991255 88991378 -32852478 - RSINE1 SINE B4 -14 151 5 1 1263 308 329 78 71 chr11 88991486 88991741 -32852115 + B4 SINE B4 2 258 -34 1 1263 209 294 0 0 chr11 88991776 88991844 -32852012 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1263 225 0 0 0 chr11 88991845 88991870 -32851986 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1263 317 279 62 34 chr11 88992125 88992333 -32851523 - L2 LINE L2 -1740 1679 1466 1 1263 236 30 0 29 chr11 88992979 88993013 -32850843 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 1 1263 215 213 64 0 chr11 88993316 88993363 -32850493 - MIR SINE MIR -134 74 25 1 1263 4427 162 63 80 chr11 88993588 88994493 -32849363 - RMER19B LTR ERVK -12 890 1 1 1263 1354 233 103 43 chr11 88994760 88995128 -32848728 - MLT1B LTR MaLR 0 390 1 1 1263 1214 176 10 5 chr11 88995168 88995368 -32848488 + B3 SINE B2 2 202 -14 1 1263 660 195 34 0 chr11 88995394 88995512 -32848344 + B3A SINE B2 1 122 -76 1 1263 223 311 142 64 chr11 88995512 88995535 -32848321 + B4A SINE B4 1 152 -140 1 1263 646 209 91 16 chr11 88995626 88995814 -32848042 + RMER20B LTR ERVK 161 362 -154 1 1263 1453 320 53 17 chr11 88996223 88996750 -32847106 + MLT1H1 LTR MaLR 10 555 0 1 1263 453 306 12 30 chr11 88997232 88997397 -32846459 - RSINE1 SINE B4 -2 163 2 1 1263 611 235 21 57 chr11 88997438 88997604 -32846252 + ID_B1 SINE B4 65 222 -2 1 1263 438 289 10 0 chr11 88997620 88997724 -32846132 + PB1D10 SINE Alu 1 105 -12 1 1263 270 0 0 0 chr11 88997724 88997754 -32846102 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 157 734 207 177 56 chr11 88997865 88998080 -32845776 - 7SK RNA RNA -90 241 1 1 1264 1010 148 151 15 chr11 88998617 88998816 -32845040 - URR1A DNA MER1_type 0 226 1 1 1264 473 303 62 62 chr11 88998830 88999055 -32844801 - MTEa LTR MaLR -149 230 6 1 1264 894 188 159 16 chr11 88999057 88999246 -32844610 + B3 SINE B2 1 216 0 1 1264 290 279 23 0 chr11 88999270 88999356 -32844500 - MLT1C LTR MaLR -159 308 221 1 1264 764 258 7 80 chr11 88999355 88999573 -32844283 - B3A SINE B2 -4 212 1 1 1264 458 306 19 58 chr11 88999572 88999587 -32844269 - MLT1C LTR MaLR -220 247 233 1 1264 994 261 5 0 chr11 88999587 88999802 -32844054 - ID_B1 SINE B4 -7 217 2 1 1264 458 306 19 58 chr11 88999802 88999991 -32843865 - MLT1C LTR MaLR -235 232 51 1 1264 846 196 21 4 chr11 89000107 89000281 -32843575 - B3 SINE B2 -8 185 1 1 1264 1329 57 0 0 chr11 89000713 89000942 -32842914 + (CA)n Simple_repeat Simple_repeat 1 229 0 2 1264 280 215 72 48 chr11 89000953 89001036 -32842820 + MER33 DNA MER1_type 96 180 -144 3 1264 1220 217 70 139 chr11 89001209 89001262 -32842594 - MTE2b LTR MaLR -2 377 325 4 1264 944 171 83 29 chr11 89001262 89001467 -32842389 + B3 SINE B2 1 216 0 5 1264 1220 217 70 139 chr11 89001467 89001815 -32842041 - MTE2b LTR MaLR -55 324 4 4 1264 23 68 0 0 chr11 89001933 89001977 -32841879 + AT_rich Low_complexity Low_complexity 1 44 0 6 1264 229 172 15 15 chr11 89002271 89002336 -32841520 + C-rich Low_complexity Low_complexity 4 68 0 7 1264 1871 214 21 54 chr11 89002363 89002787 -32841069 - MTD LTR MaLR -8 411 2 8 1264 1221 225 98 22 chr11 89002823 89003141 -32840715 - ORR1E LTR MaLR 0 359 18 9 1264 297 0 0 0 chr11 89003423 89003456 -32840400 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1264 22 0 0 0 chr11 89003722 89003744 -32840112 + GC_rich Low_complexity Low_complexity 1 22 0 1 1264 189 0 0 0 chr11 89004303 89004324 -32839532 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 1 1264 816 98 35 0 chr11 89004900 89005073 -32838783 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1264 617 260 69 31 chr11 89005074 89005233 -32838623 - RSINE1 SINE B4 0 165 1 1 1264 426 20 0 0 chr11 89005666 89005717 -32838139 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1264 547 231 0 53 chr11 89006164 89006278 -32837578 - B1_Mur2 SINE Alu -36 113 6 1 1264 201 39 0 0 chr11 89006531 89006557 -32837299 + (G)n Simple_repeat Simple_repeat 1 26 0 1 1264 516 290 30 8 chr11 89007242 89007374 -32836482 - B4 SINE B4 -77 215 81 1 1264 280 338 39 0 chr11 89007416 89007493 -32836363 - B4A SINE B4 -211 81 2 1 1264 22 35 0 0 chr11 89007790 89007819 -32836037 + AT_rich Low_complexity Low_complexity 1 29 0 1 1264 569 293 6 35 chr11 89007862 89008032 -32835824 - RSINE1 SINE B4 0 165 1 2 1264 483 278 9 0 chr11 89008036 89008144 -32835712 - PB1D10 SINE Alu -6 111 3 2 1264 26 0 0 0 chr11 89008153 89008179 -32835677 + AT_rich Low_complexity Low_complexity 1 26 0 2 1264 306 193 46 46 chr11 89008186 89008360 -32835496 + (TATAA)n Simple_repeat Simple_repeat 3 176 0 2 1264 443 266 0 46 chr11 89008360 89008469 -32835387 - ID_B1 SINE B4 -48 176 77 2 1264 392 342 57 29 chr11 89008542 89008822 -32835034 - B4A SINE B4 0 292 5 2 1264 265 299 71 10 chr11 89008882 89008980 -32834876 + Cheshire DNA MER1_type 176 279 -2141 2 1264 677 240 16 0 chr11 89009490 89009619 -32834237 - RSINE1 SINE B4 -19 146 16 2 1264 261 75 0 0 chr11 89009828 89009868 -32833988 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1264 1228 61 0 0 chr11 89009870 89010017 -32833839 - B1_Mus2 SINE Alu 0 147 1 2 1264 1323 107 27 0 chr11 89010022 89010209 -32833647 - B2_Mm1t SINE B2 -1 192 1 3 1264 501 312 87 34 chr11 89010645 89010851 -32833005 - MER2 DNA MER2_type -126 219 3 3 1264 316 281 43 26 chr11 89011693 89011810 -32832046 - L1ME3A LINE L1 -39 6134 6016 3 1264 709 213 0 11 chr11 89012350 89012526 -32831330 + CT-rich Low_complexity Low_complexity 5 178 0 3 1264 290 29 0 0 chr11 89012526 89012560 -32831296 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 3 1264 624 27 0 0 chr11 89012560 89012634 -32831222 + (TTTC)n Simple_repeat Simple_repeat 1 74 0 3 1264 1281 46 0 0 chr11 89012635 89012788 -32831068 - B2_Mm2 SINE B2 -42 153 1 3 1264 1089 232 0 5 chr11 89012872 89013084 -32830772 - B3 SINE B2 -5 211 1 3 1264 24 53 0 0 chr11 89013089 89013127 -32830729 + AT_rich Low_complexity Low_complexity 1 38 0 3 1264 252 189 38 0 chr11 89013127 89013180 -32830676 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1264 356 258 241 8 chr11 89013180 89013313 -32830543 - RSINE1 SINE B4 0 165 2 4 1264 855 78 0 0 chr11 89013716 89013832 -32830024 + (TTCC)n Simple_repeat Simple_repeat 1 116 0 4 1264 817 226 37 5 chr11 89015287 89015478 -32828378 - MTE-int LTR MaLR -108 1472 1276 4 1264 1034 352 36 81 chr11 89015550 89016153 -32827703 + MTE-int LTR MaLR 738 1313 -267 4 1264 22 0 0 0 chr11 89016257 89016279 -32827577 + GC_rich Low_complexity Low_complexity 1 22 0 4 1264 580 303 30 92 chr11 89016395 89016766 -32827090 + ORR1E LTR MaLR 1 348 -11 4 1264 26 64 0 0 chr11 89017081 89017128 -32826728 + AT_rich Low_complexity Low_complexity 1 47 0 4 1264 608 296 16 27 chr11 89017143 89017327 -32826529 - B3A SINE B2 -15 183 2 4 1264 251 245 0 19 chr11 89017585 89017639 -32826217 + ID4_ SINE ID 2 54 -29 4 1264 946 127 82 44 chr11 89017692 89017874 -32825982 + B2_Mm2 SINE B2 1 189 -6 4 1264 180 330 40 40 chr11 89018017 89018118 -32825738 + MIR SINE MIR 154 254 -8 5 1264 24 0 0 0 chr11 89019418 89019442 -32824414 + AT_rich Low_complexity Low_complexity 1 24 0 5 1264 196 340 28 65 chr11 89019843 89019950 -32823906 + MIR SINE MIR 27 129 -79 5 1264 722 81 0 57 chr11 89020968 89021073 -32822783 - B1_Mus1 SINE Alu -32 116 18 5 1264 1231 55 0 0 chr11 89021076 89021222 -32822634 + B1_Mm SINE Alu 2 147 0 5 1264 198 0 0 0 chr11 89021222 89021244 -32822612 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1264 948 233 20 0 chr11 89021416 89021618 -32822238 - B3 SINE B2 -10 206 1 5 1264 757 279 69 25 chr11 89022081 89022357 -32821499 - B4 SINE B4 -3 289 2 5 1264 873 178 189 27 chr11 89022453 89022638 -32821218 + B3 SINE B2 1 215 -1 5 1264 236 330 156 28 chr11 89022902 89023011 -32820845 - MLT1J1 LTR MaLR -321 123 1 5 1264 509 217 411 64 chr11 89023023 89023237 -32820619 - B4A SINE B4 -3 289 2 6 1264 28 0 0 0 chr11 89024324 89024352 -32819504 + AT_rich Low_complexity Low_complexity 1 28 0 6 1264 322 321 143 48 chr11 89024445 89024856 -32819000 + L2b LINE L2 2916 3381 -6 6 1264 274 348 144 19 chr11 89024865 89025073 -32818783 - MIRb SINE MIR -17 251 18 6 1264 878 124 205 43 chr11 89025418 89025603 -32818253 - URR1A DNA MER1_type 0 226 12 6 1264 766 273 22 27 chr11 89027063 89027285 -32816571 - ID_B1 SINE B4 -1 223 3 6 1264 433 335 87 42 chr11 89028743 89029008 -32814848 - MLT1C LTR MaLR 0 467 191 6 1264 262 365 49 69 chr11 89029292 89029495 -32814361 - ORR1E LTR MaLR 0 359 161 6 1264 189 107 0 0 chr11 89029499 89029527 -32814329 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1264 6234 45 35 4 chr11 89029530 89030295 -32813561 - L1_Mus1 LINE L1 -1 6566 5778 6 1264 238 272 45 143 chr11 89030336 89030469 -32813387 + MTEa LTR MaLR 181 300 -79 7 1264 1120 189 18 28 chr11 89030725 89030943 -32812913 - B3 SINE B2 0 216 1 7 1264 239 282 155 0 chr11 89031033 89031104 -32812752 - ID4_ SINE ID 0 83 2 7 1264 189 214 0 0 chr11 89031109 89031151 -32812705 - MIRc SINE MIR -120 148 107 7 1264 392 281 47 5 chr11 89031185 89031313 -32812543 - B1F1 SINE Alu -12 135 1 7 1264 775 294 25 58 chr11 89031488 89031570 -32812286 - B4 SINE B4 -26 266 194 7 1264 614 236 6 115 chr11 89031570 89031752 -32812104 - RSINE1 SINE B4 -2 163 2 7 1264 775 294 25 58 chr11 89031752 89031944 -32811912 - B4 SINE B4 -99 193 1 7 1264 203 360 38 53 chr11 89032558 89032690 -32811166 - L2a LINE L2 0 3426 3297 7 1264 627 51 0 0 chr11 89032698 89032777 -32811079 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 7 1264 521 256 47 0 chr11 89032777 89032906 -32810950 - B1F SINE Alu -8 141 7 7 1264 351 0 0 0 chr11 89032915 89032954 -32810902 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 8 1264 576 0 0 0 chr11 89032956 89033020 -32810836 + (CCA)n Simple_repeat Simple_repeat 1 64 0 8 1264 333 47 0 0 chr11 89033046 89033089 -32810767 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1264 643 249 188 34 chr11 89033306 89033703 -32810153 - L1MA4 LINE L1 -370 5930 5505 8 1264 538 208 50 0 chr11 89033704 89033824 -32810032 + B4A SINE B4 11 136 -156 8 1264 877 308 65 31 chr11 89033831 89033967 -32809889 - L1MA4 LINE L1 -402 5445 5288 8 1264 1012 99 14 0 chr11 89033967 89034109 -32809747 - B1_Mur3 SINE Alu -1 148 5 8 1264 877 308 65 31 chr11 89034109 89034491 -32809365 - L1MA4 LINE L1 -560 5287 4910 8 1264 1305 176 61 4 chr11 89034491 89034736 -32809120 - MTC LTR MaLR -162 259 1 8 1264 182 37 0 36 chr11 89034860 89034888 -32808968 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 8 1264 301 198 25 0 chr11 89035036 89035117 -32808739 + CT-rich Low_complexity Low_complexity 3 85 0 8 1264 554 258 271 14 chr11 89035118 89035409 -32808447 - MLT1D LTR MaLR -9 496 131 8 1264 246 227 119 15 chr11 89036005 89036072 -32807784 - ID SINE ID -141 83 10 9 1264 201 325 89 49 chr11 89036173 89036296 -32807560 + L3 LINE CR1 4234 4361 -128 9 1264 233 267 0 0 chr11 89036715 89036775 -32807081 + C-rich Low_complexity Low_complexity 5 64 0 9 1264 185 284 80 13 chr11 89037404 89037479 -32806377 + MIRc SINE MIR 88 167 -101 9 1264 273 291 138 28 chr11 89037968 89038113 -32805743 + MIRb SINE MIR 48 208 -60 9 1264 341 330 20 0 chr11 89038127 89038227 -32805629 - PB1D10 SINE Alu -1 116 15 9 1264 315 356 29 9 chr11 89038162 89038267 -32805589 - ID_B1 SINE B4 -64 160 54 9 1264 339 164 0 0 chr11 89038426 89038487 -32805369 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1264 374 313 0 50 chr11 89038560 89038681 -32805175 + PB1D10 SINE Alu 3 117 0 9 1264 731 66 9 0 chr11 89038705 89038811 -32805045 + (CCAA)n Simple_repeat Simple_repeat 1 107 0 9 1264 182 315 0 0 chr11 89039270 89039324 -32804532 - MER5B DNA MER1_type -1 177 124 1 1264 287 270 79 0 chr11 89039460 89039549 -32804307 + L1MA4 LINE L1 5800 5895 -405 1 1264 351 96 0 0 chr11 89039639 89039691 -32804165 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1264 525 243 88 57 chr11 89039841 89040033 -32803823 + B3 SINE B2 1 198 -18 1 1264 618 14 0 0 chr11 89040035 89040106 -32803750 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1 1264 182 224 19 58 chr11 89041207 89041259 -32802597 + MIR SINE MIR 91 140 -68 1 1264 193 339 148 24 chr11 89041659 89041828 -32802028 - MIR SINE MIR -17 245 56 1 1264 609 14 0 0 chr11 89042244 89042314 -32801542 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1264 305 347 34 39 chr11 89042355 89042669 -32801187 + Lx8 LINE L1 7071 7505 -139 1 1264 455 237 96 37 chr11 89042774 89042910 -32800946 + RSINE1 SINE B4 2 145 -20 1 1264 414 0 0 0 chr11 89043054 89043100 -32800756 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1264 401 252 33 42 chr11 89043116 89043236 -32800620 + B4A SINE B4 168 286 -6 1 1264 586 276 18 55 chr11 89044071 89044149 -32799707 - RSINE1 SINE B4 -6 159 86 1 1264 2558 119 19 3 chr11 89044149 89044510 -32799346 + ORR1B2 LTR MaLR 1 367 0 1 1264 586 276 18 55 chr11 89044510 89044596 -32799260 - RSINE1 SINE B4 -80 85 1 1 1264 1360 271 22 53 chr11 89044597 89045010 -32798846 + MTE2a LTR MaLR 10 406 -13 1 1264 430 250 282 24 chr11 89045243 89045452 -32798404 - MTE2a LTR MaLR -4 375 113 1 1264 682 324 88 22 chr11 89045595 89045914 -32797942 - ORR1E LTR MaLR 0 359 20 1 1264 1837 221 92 25 chr11 89046222 89046710 -32797146 + RLTR11A2 LTR ERVK 7 527 0 1 1264 208 231 0 0 chr11 89046715 89046754 -32797102 + polypyrimidine Low_complexity Low_complexity 3 41 0 1 1264 325 312 77 36 chr11 89046773 89046969 -32796887 - Charlie26a DNA MER1_type -36 289 86 1 1264 189 365 85 28 chr11 89047418 89047559 -32796297 + MIRb SINE MIR 33 181 -87 1 1264 500 68 0 14 chr11 89047671 89047745 -32796111 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1264 661 303 76 18 chr11 89047767 89048043 -32795813 - B4A SINE B4 0 292 1 1 1264 216 354 60 26 chr11 89048068 89048219 -32795637 - MIR SINE MIR -79 183 28 1 1264 211 348 68 17 chr11 89049441 89049558 -32794298 + MIR3 SINE MIR 33 155 -53 1 1264 620 265 178 80 chr11 89049823 89050160 -32793696 + MLT1A LTR MaLR 1 390 0 1 1264 189 316 27 34 chr11 89050348 89050451 -32793405 + MIR SINE MIR 82 186 -90 1 1264 425 104 13 0 chr11 89050558 89050635 -32793221 + (GAAA)n Simple_repeat Simple_repeat 4 81 0 1 1264 718 275 79 10 chr11 89050962 89051164 -32792692 + B3 SINE B2 1 216 0 1 1264 1522 228 53 37 chr11 89051185 89051856 -32792000 + L1MC1 LINE L1 4904 5592 -741 1 1264 386 121 15 0 chr11 89051856 89051922 -32791934 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1 1264 1138 285 91 28 chr11 89052035 89052432 -32791424 - MT2A LTR ERVL -111 422 1 1 1264 701 269 55 121 chr11 89052432 89052502 -32791354 + L1MC1 LINE L1 5604 5670 -663 1 1264 369 0 0 0 chr11 89052502 89052543 -32791313 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 1 1264 701 269 55 121 chr11 89052543 89052928 -32790928 + L1MC1 LINE L1 5671 6029 -304 1 1264 407 89 0 48 chr11 89052944 89052957 -32790899 + (A)n Simple_repeat Simple_repeat 1 10 0 1 1264 1202 48 0 14 chr11 89052957 89053105 -32790751 + B1_Mus2 SINE Alu 2 147 0 1 1264 407 89 0 48 chr11 89053105 89053174 -32790682 + (A)n Simple_repeat Simple_repeat 1 69 0 1 1264 958 158 0 0 chr11 89053174 89053313 -32790543 - B1_Mur2 SINE Alu -9 140 2 1 1264 755 169 8 31 chr11 89053430 89053558 -32790298 + B1_Mur3 SINE Alu 12 136 -13 1 1264 315 0 0 0 chr11 89053558 89053593 -32790263 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 1264 490 211 53 0 chr11 89053647 89053761 -32790095 + L1MC1 LINE L1 6197 6316 -17 1 1264 340 281 150 72 chr11 89054190 89054370 -32789486 - MIR SINE MIR -30 232 39 1 1264 549 30 0 0 chr11 89054427 89054494 -32789362 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1264 240 35 0 0 chr11 89055213 89055242 -32788614 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1264 324 289 16 55 chr11 89055928 89056056 -32787800 - MIRb SINE MIR -122 146 24 1 1264 1402 78 10 16 chr11 89056063 89056257 -32787599 - B2_Mm1a SINE B2 0 193 1 1 1264 198 256 0 0 chr11 89056598 89056676 -32787180 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1264 737 258 20 2 chr11 89056676 89056867 -32786989 - B3A SINE B2 -13 203 9 1 1264 208 343 75 46 chr11 89056931 89057105 -32786751 + MIR3 SINE MIR 12 190 -18 1 1264 1523 235 12 50 chr11 89057128 89057527 -32786329 - MTC LTR MaLR -26 395 12 1 1264 462 36 0 0 chr11 89057784 89057840 -32786016 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1264 515 349 56 41 chr11 89057844 89058110 -32785746 - B4A SINE B4 -18 274 5 1 1264 661 253 167 37 chr11 89058202 89058448 -32785408 + Lx8 LINE L1 6172 6449 -1024 1 1264 1468 151 119 36 chr11 89058674 89059011 -32784845 + ORR1D1 LTR MaLR 2 366 -8 1 1264 253 375 0 8 chr11 89059056 89059177 -32784679 + MER5A DNA MER1_type 1 120 -69 1 1264 859 188 0 0 chr11 89059430 89059574 -32784282 - B1_Mur4 SINE Alu -6 144 1 1 1264 497 312 198 13 chr11 89059746 89060120 -32783736 - MLT1F1 LTR MaLR -63 506 64 1 1264 235 311 0 13 chr11 89060391 89060466 -32783390 - MLT1F1-int LTR MaLR -327 1162 1089 1 1264 530 263 72 140 chr11 89060474 89060699 -32783157 + B4 SINE B4 3 215 -77 1 1264 198 0 0 0 chr11 89060699 89060721 -32783135 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1264 530 263 72 140 chr11 89060721 89060787 -32783069 + B4 SINE B4 216 274 -18 1 1264 279 304 86 29 chr11 89060989 89061128 -32782728 - MLT1F1-int LTR MaLR -631 858 712 1 1264 857 337 100 7 chr11 89061223 89061669 -32782187 - MLT1F1 LTR MaLR -79 490 1 1 1264 310 339 92 55 chr11 89061833 89062105 -32781751 - LTR88c LTR Genie? -565 297 16 1 1264 536 53 27 0 chr11 89062618 89062693 -32781163 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 1 1264 1244 258 22 47 chr11 89062702 89063064 -32780792 - MTEa LTR MaLR -1 378 26 1 1264 2535 122 10 27 chr11 89063415 89063829 -32780027 + MTB_Mm LTR MaLR 1 407 0 1 1264 196 356 34 8 chr11 89064035 89064154 -32779702 - MIRb SINE MIR -16 252 131 1 1264 498 290 45 12 chr11 89064210 89064503 -32779353 + L1MA4 LINE L1 5737 5996 -1477 1 1264 285 29 0 0 chr11 89064575 89064609 -32779247 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1264 256 157 216 0 chr11 89064633 89064681 -32779175 + PB1D9 SINE Alu 5 63 -57 1 1264 2967 102 64 18 chr11 89064681 89065181 -32778675 - RLTR11A LTR ERVK 0 528 6 1 1264 483 194 10 31 chr11 89065162 89065258 -32778598 + B1F2 SINE Alu 49 142 -7 1 1264 1540 63 0 5 chr11 89065791 89065983 -32777873 + B2_Mm2 SINE B2 3 193 -2 1 1264 384 264 45 57 chr11 89066727 89066904 -32776952 + RLTR42-int LTR ERVK 1231 1405 -4117 1 1264 1292 68 8 8 chr11 89067097 89067351 -32776505 + (TTTC)n Simple_repeat Simple_repeat 1 254 0 1 1264 189 0 0 0 chr11 89067351 89067372 -32776484 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 1 1264 492 340 111 18 chr11 89067503 89067844 -32776012 + MLT1L LTR MaLR 189 561 -49 1 1264 779 309 44 55 chr11 89068009 89068468 -32775388 + L3 LINE CR1 3040 3493 -996 1 1264 515 320 96 21 chr11 89068810 89069091 -32774765 + L3 LINE CR1 3488 3789 -700 1 1264 246 399 14 28 chr11 89069206 89069348 -32774508 + L3 LINE CR1 3965 4104 -385 1 1264 387 0 0 0 chr11 89069830 89069873 -32773983 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1264 549 0 0 0 chr11 89070664 89070725 -32773131 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1264 720 0 0 0 chr11 89071866 89071946 -32771910 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 1 1264 1237 102 0 28 chr11 89071946 89072118 -32771738 - B2_Mm2 SINE B2 -26 169 1 1 1264 205 242 45 75 chr11 89072707 89072774 -32771082 - MIRm SINE MIR -17 259 195 1 1264 281 246 15 0 chr11 89074757 89074822 -32769034 + MIR SINE MIR 59 124 -84 1 1264 488 307 129 0 chr11 89074952 89075092 -32768764 - LTR16C LTR ERVL -157 332 175 1 1264 351 0 0 0 chr11 89075413 89075452 -32768404 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1264 381 297 16 63 chr11 89075563 89075689 -32768167 + RSINE1 SINE B4 3 122 -43 1 1264 558 130 0 0 chr11 89075696 89075804 -32768052 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1264 603 0 0 0 chr11 89075804 89075870 -32767986 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1264 1214 62 0 0 chr11 89075890 89076036 -32767820 + B1_Mus2 SINE Alu 2 147 0 1 1264 258 32 0 0 chr11 89076709 89076740 -32767116 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1264 1454 248 165 45 chr11 89076902 89077356 -32766500 - Lx8 LINE L1 -2 7471 6954 1 1264 324 0 0 0 chr11 89077356 89077392 -32766464 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1264 1454 248 165 45 chr11 89077392 89077452 -32766404 - Lx8 LINE L1 -520 6953 6896 1 1264 5063 283 131 90 chr11 89077443 89078443 -32765413 - Lx8 LINE L1 -686 6787 5699 1 1264 282 143 0 0 chr11 89078443 89078485 -32765371 - 5S rRNA rRNA -79 42 1 1 1264 5063 283 131 90 chr11 89078485 89078838 -32765018 - Lx8 LINE L1 -1775 5698 5315 1 1264 436 259 9 9 chr11 89078838 89078951 -32764905 - PB1D9 SINE Alu -1 119 7 1 1264 5063 283 131 90 chr11 89078951 89079558 -32764298 - Lx8 LINE L1 -686 5314 4651 1 1264 963 89 0 0 chr11 89079558 89079693 -32764163 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 1 1264 1150 69 7 0 chr11 89079700 89079845 -32764011 - B1_Mus1 SINE Alu -1 147 2 1 1264 5063 274 174 77 chr11 89079845 89079857 -32763999 - Lx8 LINE L1 -1204 4676 4670 1 1264 464 167 0 0 chr11 89079857 89079929 -32763927 - tRNA-Asp-GAY tRNA tRNA -3 72 1 1 1264 5063 274 174 77 chr11 89079929 89081561 -32762295 - Lx8 LINE L1 -1211 4669 2565 1 1264 480 18 0 0 chr11 89081561 89081618 -32762238 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 1264 5063 274 174 77 chr11 89081618 89082270 -32761586 - Lx8 LINE L1 -3316 2564 1926 1 1264 291 28 0 0 chr11 89082270 89082306 -32761550 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1264 1167 62 7 0 chr11 89082309 89082455 -32761401 - B1_Mus1 SINE Alu 0 148 2 1 1264 5063 274 174 77 chr11 89082455 89083025 -32760831 - Lx8 LINE L1 -3955 1925 1327 1 1264 25 0 0 0 chr11 89083047 89083072 -32760784 + AT_rich Low_complexity Low_complexity 1 25 0 1 1264 4240 92 38 3 chr11 89083116 89083697 -32760159 - MT2B LTR ERVL 0 601 1 1 1264 962 141 6 0 chr11 89083828 89083998 -32759858 + (TG)n Simple_repeat Simple_repeat 1 171 0 1 1264 670 259 70 74 chr11 89084943 89085050 -32758806 - B4 SINE B4 -64 228 106 1 1264 1640 134 150 7 chr11 89085050 89085336 -32758520 + ORR1A2 LTR MaLR 1 327 0 2 1264 670 259 70 74 chr11 89085336 89085457 -32758399 - B4 SINE B4 -187 105 1 1 1264 348 265 36 12 chr11 89085805 89085889 -32757967 + PB1D7 SINE Alu 28 113 -7 2 1264 911 265 61 141 chr11 89086278 89086655 -32757201 + MLT1A1 LTR MaLR 19 408 0 2 1264 585 0 0 0 chr11 89086872 89086937 -32756919 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1264 276 309 0 0 chr11 89086966 89087034 -32756822 - MLT1A LTR MaLR -251 123 56 2 1264 267 374 7 0 chr11 89087641 89087770 -32756086 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1264 333 0 0 0 chr11 89087770 89087807 -32756049 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1264 267 374 7 0 chr11 89087807 89087824 -32756032 + (TG)n Simple_repeat Simple_repeat 2 18 0 2 1264 459 125 0 0 chr11 89088251 89088323 -32755533 + (CGGGG)n Simple_repeat Simple_repeat 1 72 0 2 1264 798 163 64 0 chr11 89088534 89088557 -32755299 - B1_Mur4 SINE Alu 0 150 128 2 1264 942 106 0 0 chr11 89088557 89088698 -32755158 + (TG)n Simple_repeat Simple_repeat 2 142 0 2 1264 798 163 64 0 chr11 89088698 89088815 -32755041 - B1_Mur4 SINE Alu -23 127 2 2 1264 325 232 52 10 chr11 89089287 89089383 -32754473 + MLT1G1 LTR MaLR 413 512 -67 2 1264 414 53 0 0 chr11 89089390 89089447 -32754409 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1264 477 0 0 0 chr11 89090017 89090070 -32753786 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2 1264 531 244 23 8 chr11 89090186 89090318 -32753538 + MLT1B LTR MaLR 38 171 -219 2 1264 634 287 7 7 chr11 89090326 89090477 -32753379 + RSINE1 SINE B4 3 153 -12 2 1264 483 18 0 0 chr11 89090504 89090560 -32753296 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1264 338 270 54 0 chr11 89090579 89090690 -32753166 + MLT1B LTR MaLR 165 281 -109 2 1264 307 225 0 81 chr11 89091453 89091540 -32752316 + MER20 DNA MER1_type 8 87 -132 2 1264 495 0 0 0 chr11 89091713 89091768 -32752088 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1264 203 263 0 17 chr11 89092839 89092897 -32750959 + GA-rich Low_complexity Low_complexity 3 59 0 2 1264 718 41 20 0 chr11 89093031 89093129 -32750727 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 2 1264 1348 157 9 22 chr11 89094009 89094237 -32749619 + URR1B DNA MER1_type 1 225 0 2 1264 1277 244 42 90 chr11 89094617 89095049 -32748807 - MTD LTR MaLR -8 411 1 2 1264 817 235 95 21 chr11 89095473 89095716 -32748140 + B4A SINE B4 21 281 -11 2 1264 405 0 0 0 chr11 89095739 89095784 -32748072 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 2 1264 546 223 4 0 chr11 89095784 89096060 -32747796 + (CA)n Simple_repeat Simple_repeat 1 277 0 2 1264 850 187 70 6 chr11 89096328 89096500 -32747356 - B3 SINE B2 0 216 34 2 1264 266 318 31 30 chr11 89097109 89097249 -32746607 + L1M5 LINE L1 5510 5651 -589 2 1264 551 112 11 0 chr11 89097430 89097519 -32746337 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 2 1264 2151 144 54 29 chr11 89097773 89098181 -32745675 + MTC LTR MaLR 1 418 -3 2 1264 267 293 9 83 chr11 89098417 89098525 -32745331 - MLT1J2 LTR MaLR -282 166 67 2 1264 1743 196 21 42 chr11 89098575 89098953 -32744903 - ORR1D1 LTR MaLR -4 370 1 2 1264 26 82 0 0 chr11 89099227 89099288 -32744568 + AT_rich Low_complexity Low_complexity 1 61 0 2 1264 756 182 0 0 chr11 89099288 89099425 -32744431 - B1_Mur1 SINE Alu -2 147 11 2 1264 953 258 9 5 chr11 89099425 89099639 -32744217 - B3 SINE B2 -1 215 1 2 1264 1689 232 68 47 chr11 89100286 89100576 -32743280 + Lx8 LINE L1 6945 7237 -236 2 1264 573 15 0 0 chr11 89100576 89100642 -32743214 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1264 1689 232 68 47 chr11 89100642 89100867 -32742989 + Lx8 LINE L1 7238 7470 -3 2 1264 492 202 0 0 chr11 89102636 89102730 -32741126 - MTE2b LTR MaLR 0 379 286 2 1264 525 174 0 0 chr11 89102739 89102831 -32741025 - MTE2b LTR MaLR -283 96 5 2 1264 237 241 17 0 chr11 89102859 89102917 -32740939 + CT-rich Low_complexity Low_complexity 3 61 0 2 1264 320 293 88 54 chr11 89102938 89103086 -32740770 - HAL1-3A_ME LINE L1 -421 2437 2285 2 1264 213 214 0 23 chr11 89103086 89103129 -32740727 + polypyrimidine Low_complexity Low_complexity 2 43 0 2 1264 692 42 10 0 chr11 89103768 89103864 -32739992 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1264 505 252 0 0 chr11 89104663 89104774 -32739082 - L1M5 LINE L1 -457 5667 5557 2 1264 217 323 84 4 chr11 89105293 89105420 -32738436 - L2a LINE L2 -21 3405 3222 2 1264 512 267 15 0 chr11 89105524 89105655 -32738201 + B1_Mur4 SINE Alu 1 133 -17 2 1264 1098 190 49 0 chr11 89105978 89106183 -32737673 - B3 SINE B2 0 216 2 2 1264 299 308 0 0 chr11 89106199 89106277 -32737579 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1264 456 251 105 87 chr11 89106523 89106789 -32737067 - B4 SINE B4 -19 273 3 2 1264 534 286 138 20 chr11 89106789 89106982 -32736874 - B4A SINE B4 -69 223 7 2 1264 200 272 181 5 chr11 89107530 89107643 -32736213 + MIR SINE MIR 102 226 -36 2 1264 183 312 141 13 chr11 89107990 89108146 -32735710 + MER5B DNA MER1_type 3 178 0 2 1264 1170 21 0 59 chr11 89108394 89108537 -32735319 + B1_Mus1 SINE Alu 2 139 -9 2 1264 198 71 0 0 chr11 89108537 89108565 -32735291 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1264 810 289 61 32 chr11 89108702 89108981 -32734875 + B4A SINE B4 1 287 -5 2 1264 387 0 0 0 chr11 89109005 89109048 -32734808 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1264 378 61 0 0 chr11 89109048 89109096 -32734760 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1264 326 23 23 0 chr11 89109149 89109192 -32734664 + (GAA)n Simple_repeat Simple_repeat 2 45 0 2 1264 271 174 0 0 chr11 89109647 89109693 -32734163 + B4A SINE B4 43 88 -204 2 1264 1177 183 29 0 chr11 89110766 89110974 -32732882 - B3 SINE B2 -2 214 1 2 1264 300 141 10 61 chr11 89111120 89111218 -32732638 + G-rich Low_complexity Low_complexity 6 98 0 2 1264 325 225 42 67 chr11 89113273 89113392 -32730464 + B1F1 SINE Alu 32 147 -2 2 1264 402 272 0 24 chr11 89113405 89113488 -32730368 + ID4 SINE ID 2 82 -1 2 1264 22 0 0 0 chr11 89113495 89113517 -32730339 + AT_rich Low_complexity Low_complexity 1 22 0 2 1264 454 194 42 12 chr11 89113680 89113847 -32730009 + (CCCA)n Simple_repeat Simple_repeat 4 175 0 2 1264 261 194 0 127 chr11 89114131 89114202 -32729654 + L2b LINE L2 3312 3373 -2 2 1264 209 365 67 13 chr11 89114212 89114287 -32729569 - L3b LINE CR1 -19 463 385 2 1264 295 250 0 15 chr11 89115921 89115986 -32727870 - MADE2 DNA Mariner 0 80 17 2 1264 327 25 0 0 chr11 89116016 89116056 -32727800 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1264 428 295 29 52 chr11 89116058 89116194 -32727662 - RSINE1 SINE B4 -31 134 2 2 1264 318 314 32 16 chr11 89116725 89116848 -32727008 + MLT1H LTR MaLR 32 156 -393 2 1264 21 0 0 0 chr11 89116917 89116938 -32726918 + AT_rich Low_complexity Low_complexity 1 21 0 2 1264 274 328 63 16 chr11 89117056 89117183 -32726673 - MLT1E1A LTR MaLR -1 679 547 2 1264 225 298 0 34 chr11 89117228 89117287 -32726569 - MLT1E1A LTR MaLR -439 121 65 2 1264 247 211 151 32 chr11 89117543 89117636 -32726220 + Charlie4z DNA MER1_type 63 166 -1 2 1264 3964 209 70 18 chr11 89118018 89119005 -32724851 + Lx9 LINE L1 6604 7641 -3 2 1264 213 175 0 0 chr11 89119503 89119543 -32724313 + G-rich Low_complexity Low_complexity 6 45 0 2 1264 464 269 8 40 chr11 89119884 89120008 -32723848 + PB1D7 SINE Alu 1 120 0 2 1264 234 320 147 20 chr11 89120030 89120132 -32723724 + MIR SINE MIR 37 151 -111 2 1264 601 146 118 0 chr11 89120173 89120283 -32723573 - B1_Mur4 SINE Alu -9 141 19 2 1264 184 0 97 0 chr11 89121195 89121226 -32722630 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 2 1264 228 67 0 0 chr11 89121508 89121538 -32722318 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1264 183 329 160 28 chr11 89121615 89121759 -32722097 + MIRc SINE MIR 56 218 -50 2 1264 510 260 1 2 chr11 89121852 89121964 -32721892 + RSINE1 SINE B4 4 115 -50 2 1264 1132 68 0 45 chr11 89122033 89122187 -32721669 + B1_Mus2 SINE Alu 1 147 0 2 1264 23 0 0 0 chr11 89122194 89122217 -32721639 + AT_rich Low_complexity Low_complexity 1 23 0 2 1264 185 298 0 0 chr11 89122703 89122750 -32721106 - MIRm SINE MIR -13 263 217 2 1264 889 159 14 0 chr11 89122994 89123125 -32720731 + B1_Mur4 SINE Alu 9 141 -9 2 1264 243 0 0 0 chr11 89123125 89123152 -32720704 + (CAACC)n Simple_repeat Simple_repeat 2 28 0 2 1264 306 73 0 0 chr11 89123190 89123231 -32720625 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1264 733 286 61 18 chr11 89123379 89123607 -32720249 + MLT1A0 LTR MaLR 2 239 -126 2 1264 259 336 81 23 chr11 89125849 89126006 -32717850 + MIRc SINE MIR 15 179 -97 2 1264 1323 158 18 22 chr11 89127789 89128015 -32715841 + URR1B DNA MER1_type 1 225 0 2 1265 249 302 135 0 chr11 89129364 89129460 -32714396 + MIRb SINE MIR 34 142 -126 2 1265 322 350 89 66 chr11 89129768 89130117 -32713739 + ORR1E LTR MaLR 1 357 -2 2 1265 289 290 108 66 chr11 89130474 89130640 -32713216 + MER96 DNA hAT 2 174 -1 2 1265 369 0 0 0 chr11 89130645 89130686 -32713170 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1265 267 301 8 0 chr11 89130764 89130836 -32713020 - B4 SINE B4 -2 290 217 2 1265 1253 61 0 0 chr11 89130856 89131004 -32712852 - B1_Mus1 SINE Alu 0 148 1 2 1265 1046 198 5 48 chr11 89131005 89131212 -32712644 - B4A SINE B4 -41 251 54 2 1265 204 40 0 0 chr11 89131516 89131541 -32712315 + (CCCG)n Simple_repeat Simple_repeat 1 25 0 2 1265 363 228 24 37 chr11 89131771 89131853 -32712003 - ID4 SINE ID 0 83 3 2 1265 262 355 81 37 chr11 89132491 89132789 -32711067 + L2c LINE L2 3071 3381 -6 2 1265 217 330 46 19 chr11 89132890 89132998 -32710858 - MIRm SINE MIR -130 146 36 3 1265 191 338 0 14 chr11 89133319 89133391 -32710465 - MIRb SINE MIR -11 257 187 3 1265 403 280 62 27 chr11 89133778 89133923 -32709933 - B4A SINE B4 0 292 141 3 1265 668 211 109 88 chr11 89134174 89134366 -32709490 - B3A SINE B2 -1 197 2 3 1265 249 354 0 0 chr11 89134519 89134601 -32709255 + PB1D10 SINE Alu 36 117 0 3 1265 337 250 28 0 chr11 89134610 89134682 -32709174 + ID4 SINE ID 1 74 -9 3 1265 240 35 0 0 chr11 89135453 89135482 -32708374 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1265 712 292 21 16 chr11 89136281 89136469 -32707387 - B4 SINE B4 0 292 104 3 1265 251 338 76 9 chr11 89137154 89137322 -32706534 + MIR SINE MIR 57 250 -18 3 1265 276 332 106 5 chr11 89139049 89139237 -32704619 + MER20 DNA MER1_type 8 214 -5 3 1265 719 255 0 28 chr11 89139403 89139548 -32704308 + RSINE1 SINE B4 1 141 -24 3 1265 644 115 8 0 chr11 89139550 89139672 -32704184 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 1265 197 208 35 6 chr11 89139710 89139884 -32703972 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1265 182 194 16 0 chr11 89139928 89139990 -32703866 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1265 328 229 14 0 chr11 89139990 89140060 -32703796 + HAL1-3A_ME LINE L1 1975 2045 -813 3 1265 335 296 19 58 chr11 89140351 89140505 -32703351 + B1F SINE Alu 2 149 0 3 1265 213 309 74 0 chr11 89140510 89140591 -32703265 + BC1_Mm scRNA scRNA 2 88 -64 3 1265 184 349 16 0 chr11 89140800 89140863 -32702993 + MIRb SINE MIR 113 176 -92 3 1265 652 283 89 0 chr11 89141822 89142013 -32701843 + ID_B1 SINE B4 2 209 -15 3 1265 208 239 0 21 chr11 89142189 89142236 -32701620 + CT-rich Low_complexity Low_complexity 2 47 0 3 1265 536 307 29 0 chr11 89142236 89142373 -32701483 - B1F1 SINE Alu -8 141 1 3 1265 434 316 51 28 chr11 89142613 89142789 -32701067 + MIRb SINE MIR 20 199 -69 3 1265 188 302 0 0 chr11 89143773 89143816 -32700040 + MIR SINE MIR 111 153 -109 3 1265 239 0 0 31 chr11 89143821 89143853 -32700003 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1265 24 0 0 0 chr11 89144104 89144128 -32699728 + AT_rich Low_complexity Low_complexity 1 24 0 3 1265 453 244 59 36 chr11 89144171 89144392 -32699464 - Lx9 LINE L1 0 7644 7419 3 1265 2721 181 87 63 chr11 89144412 89144514 -32699342 - Lx9 LINE L1 -126 7518 7421 3 1265 1235 168 18 9 chr11 89144514 89144736 -32699120 + URR1B DNA MER1_type 2 225 0 3 1265 2721 181 87 63 chr11 89144736 89145300 -32698556 - Lx9 LINE L1 -224 7420 6836 3 1265 801 68 0 146 chr11 89145300 89145437 -32698419 + ORR1A4 LTR MaLR 1 117 -212 3 1265 182 62 31 0 chr11 89145464 89145496 -32698360 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 1265 297 242 0 43 chr11 89145496 89145565 -32698291 - Lx9 LINE L1 -1245 6399 6334 3 1265 317 359 150 37 chr11 89145606 89145933 -32697923 + L2c LINE L2 3024 3387 0 3 1265 450 0 0 0 chr11 89147388 89147438 -32696418 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1265 672 199 7 49 chr11 89147583 89147726 -32696130 - Lx5 LINE L1 -402 6648 6512 3 1265 817 337 10 17 chr11 89148167 89148457 -32695399 - B4A SINE B4 -4 288 1 3 1265 452 175 29 49 chr11 89148490 89148592 -32695264 + PB1D10 SINE Alu 6 105 -12 3 1265 198 276 184 0 chr11 89149061 89149137 -32694719 - MIRb SINE MIR -172 96 7 3 1265 226 135 0 0 chr11 89149420 89149457 -32694399 + MLT2B5 LTR ERVL 3 39 -678 3 1265 486 0 0 0 chr11 89149480 89149534 -32694322 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1265 212 361 137 19 chr11 89149704 89149865 -32693991 + MIRb SINE MIR 55 234 -34 3 1265 693 200 57 0 chr11 89149992 89150132 -32693724 + B1F SINE Alu 1 148 -1 3 1265 239 211 121 40 chr11 89150886 89150985 -32692871 + MIR3 SINE MIR 92 198 -10 3 1265 644 239 58 75 chr11 89151284 89151510 -32692346 - ID_B1 SINE B4 0 224 3 3 1265 525 131 0 0 chr11 89151647 89151731 -32692125 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 1265 286 307 113 9 chr11 89151952 89152067 -32691789 + MIRc SINE MIR 120 246 -22 3 1265 998 177 5 47 chr11 89152991 89153181 -32690675 + B3A SINE B2 1 182 -16 3 1265 462 143 0 0 chr11 89153181 89153258 -32690598 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 1265 378 344 90 0 chr11 89153377 89153499 -32690357 - RMER30 DNA MER1_type -1 201 69 3 1265 1431 59 43 11 chr11 89153621 89153809 -32690047 - B2_Mm2 SINE B2 0 195 2 3 1265 643 259 46 31 chr11 89153809 89153847 -32690009 - B3A SINE B2 0 198 165 3 1265 405 0 0 0 chr11 89153847 89153892 -32689964 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1265 643 259 46 31 chr11 89153892 89154048 -32689808 - B3A SINE B2 -34 164 1 3 1265 693 213 113 0 chr11 89154048 89154189 -32689667 - ID_B1 SINE B4 -67 157 1 3 1265 677 97 10 0 chr11 89154216 89154319 -32689537 + (TC)n Simple_repeat Simple_repeat 1 104 0 3 1265 235 254 56 14 chr11 89154717 89154789 -32689067 - LTR85c LTR Gypsy? -721 102 28 3 1265 252 276 27 45 chr11 89154789 89154899 -32688957 - L2 LINE L2 -581 2838 2731 3 1265 205 355 9 18 chr11 89154964 89155076 -32688780 + MIRc SINE MIR 60 170 -98 3 1265 674 252 49 0 chr11 89155533 89155676 -32688180 + B3A SINE B2 1 150 -48 3 1265 270 329 94 63 chr11 89156062 89156221 -32687635 - Charlie8 DNA MER1_type -2124 304 141 3 1265 804 307 53 40 chr11 89156984 89157286 -32686570 + MLT1G LTR MaLR 18 323 -268 3 1265 194 366 52 47 chr11 89157601 89157773 -32686083 + L2c LINE L2 2917 3089 -298 3 1265 407 257 164 0 chr11 89158092 89158232 -32685624 + MIRm SINE MIR 23 185 -91 3 1265 3002 52 38 15 chr11 89158262 89158654 -32685202 - L1Md_F2 LINE L1 -1 6581 6181 3 1265 261 0 0 0 chr11 89158820 89158849 -32685007 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 3 1265 218 229 83 28 chr11 89158912 89158984 -32684872 + MIR3 SINE MIR 122 197 -11 3 1265 198 0 0 0 chr11 89159878 89159900 -32683956 + (CGGG)n Simple_repeat Simple_repeat 4 25 0 3 1265 237 344 0 0 chr11 89160775 89160871 -32682985 + G-rich Low_complexity Low_complexity 1 96 0 3 1265 21 0 0 0 chr11 89161776 89161797 -32682059 + GC_rich Low_complexity Low_complexity 1 21 0 3 1265 228 67 0 0 chr11 89163816 89163846 -32680010 + (CGG)n Simple_repeat Simple_repeat 3 32 0 3 1265 210 91 0 0 chr11 89164061 89164094 -32679762 + (CGG)n Simple_repeat Simple_repeat 3 35 0 3 1265 302 67 22 0 chr11 89164165 89164210 -32679646 + (CGG)n Simple_repeat Simple_repeat 2 47 0 3 1265 585 0 0 0 chr11 89164573 89164638 -32679218 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1265 558 0 0 0 chr11 89164665 89164727 -32679129 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1265 225 0 0 0 chr11 89164992 89165017 -32678839 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1265 252 282 192 79 chr11 89165190 89165367 -32678489 + MIR3 SINE MIR 6 202 -6 3 1265 404 237 43 7 chr11 89165900 89165996 -32677860 + B1F SINE Alu 24 124 -3 3 1265 1083 189 43 14 chr11 89166048 89166257 -32677599 + B3 SINE B2 2 216 0 3 1265 866 184 103 69 chr11 89166606 89166810 -32677046 - B3 SINE B2 -5 211 1 3 1265 189 0 0 0 chr11 89167439 89167460 -32676396 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1265 1263 41 0 0 chr11 89167460 89167607 -32676249 - B1_Mus2 SINE Alu 0 147 1 3 1265 303 248 160 10 chr11 89167777 89167913 -32675943 + MIRc SINE MIR 13 164 -104 3 1265 224 304 70 56 chr11 89168481 89168624 -32675232 + MIRm SINE MIR 84 228 -48 3 1265 780 11 0 0 chr11 89169825 89169914 -32673942 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 1265 291 157 0 0 chr11 89170068 89170138 -32673718 + C-rich Low_complexity Low_complexity 1 70 0 3 1265 783 296 65 32 chr11 89170894 89171173 -32672683 + B4A SINE B4 1 288 -4 3 1265 215 254 0 43 chr11 89171178 89171248 -32672608 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1265 221 358 12 24 chr11 89172195 89172278 -32671578 - MIR SINE MIR -97 165 84 3 1265 2117 120 9 6 chr11 89172638 89172956 -32670900 + ORR1A2 LTR MaLR 1 319 -8 3 1265 235 338 89 7 chr11 89173173 89173319 -32670537 + RSINE1 SINE B4 1 158 -7 3 1265 456 19 0 0 chr11 89174923 89174976 -32668880 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1265 249 292 156 0 chr11 89176404 89176500 -32667356 - MIRb SINE MIR -122 146 36 3 1265 1136 164 40 5 chr11 89176641 89176843 -32667013 - B3 SINE B2 -6 210 2 3 1265 720 64 0 0 chr11 89176977 89177071 -32666785 + (TCCC)n Simple_repeat Simple_repeat 1 94 0 3 1265 232 172 17 17 chr11 89177076 89177135 -32666721 + CT-rich Low_complexity Low_complexity 2 60 0 3 1265 253 294 124 29 chr11 89177137 89177242 -32666614 - PB1D9 SINE Alu -5 115 1 3 1265 308 271 110 68 chr11 89177395 89177632 -32666224 + L1MB3 LINE L1 5485 5731 -452 3 1265 254 238 50 208 chr11 89177678 89177837 -32666019 + B4A SINE B4 12 146 -19 3 1265 680 91 0 9 chr11 89177855 89177966 -32665890 + (CA)n Simple_repeat Simple_repeat 1 110 0 3 1265 362 314 74 6 chr11 89178092 89178268 -32665588 + L1MB3 LINE L1 5970 6157 -26 3 1265 211 255 0 0 chr11 89179030 89179077 -32664779 + C-rich Low_complexity Low_complexity 1 47 0 3 1265 503 53 0 13 chr11 89179566 89179642 -32664214 + (CTGGGG)n Simple_repeat Simple_repeat 3 77 0 3 1265 557 134 0 68 chr11 89180102 89180294 -32663562 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 3 1265 320 173 22 67 chr11 89180305 89180485 -32663371 + (CAGAGA)n Simple_repeat Simple_repeat 3 174 0 3 1265 226 83 40 40 chr11 89180508 89180558 -32663298 + (CAGAGA)n Simple_repeat Simple_repeat 2 51 0 3 1265 220 279 48 9 chr11 89180574 89180679 -32663177 + (CAGAGA)n Simple_repeat Simple_repeat 2 110 0 3 1265 890 182 0 8 chr11 89180682 89180952 -32662904 + GA-rich Low_complexity Low_complexity 1 267 0 3 1265 467 251 31 3 chr11 89181518 89181631 -32662225 - PB1D10 SINE Alu -5 112 1 3 1265 289 368 37 43 chr11 89181945 89182107 -32661749 - MIR SINE MIR -99 163 3 3 1265 800 254 107 70 chr11 89182784 89183131 -32660725 + ORR1E LTR MaLR 1 379 0 4 1265 1105 205 20 0 chr11 89183236 89183436 -32660420 - B3 SINE B2 0 216 13 4 1265 558 238 141 16 chr11 89184110 89184302 -32659554 - B3 SINE B2 0 216 1 4 1265 596 225 102 34 chr11 89184534 89184681 -32659175 + RSINE1 SINE B4 3 159 -6 4 1265 631 221 7 64 chr11 89184990 89185130 -32658726 + ID_B1 SINE B4 81 212 -12 4 1265 333 0 0 0 chr11 89185157 89185194 -32658662 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1265 1198 55 7 0 chr11 89185195 89185340 -32658516 - B1_Mus2 SINE Alu 0 147 2 4 1265 734 242 64 44 chr11 89185355 89185558 -32658298 - ID_B1 SINE B4 -14 210 4 4 1265 771 156 0 0 chr11 89185631 89185810 -32658046 + GA-rich Low_complexity Low_complexity 2 180 0 4 1265 21 36 0 0 chr11 89186357 89186385 -32657471 + AT_rich Low_complexity Low_complexity 1 28 0 4 1265 1052 236 0 14 chr11 89186523 89186742 -32657114 - B3 SINE B2 0 216 1 4 1265 273 288 65 97 chr11 89187758 89187943 -32655913 + MIRb SINE MIR 9 187 -81 4 1265 582 237 9 29 chr11 89187976 89188110 -32655746 + ID_B1 SINE B4 91 230 -62 4 1265 639 269 0 0 chr11 89188145 89188294 -32655562 + B1F1 SINE Alu 1 149 0 4 1265 477 0 0 0 chr11 89188413 89188466 -32655390 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1265 452 256 0 0 chr11 89189418 89189504 -32654352 - RSINE1 SINE B4 -76 89 4 4 1265 498 316 25 12 chr11 89190186 89190346 -32653510 + RSINE1 SINE B4 2 163 -2 4 1265 24 67 0 0 chr11 89190356 89190401 -32653455 + AT_rich Low_complexity Low_complexity 1 45 0 4 1265 982 234 23 5 chr11 89190482 89190697 -32653159 + ID_B1 SINE B4 1 219 -5 4 1265 516 32 0 0 chr11 89190717 89190779 -32653077 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 4 1265 1098 325 51 53 chr11 89190825 89191296 -32652560 - MER82 DNA MER2_type -1 652 183 4 1265 249 211 0 0 chr11 89191300 89191352 -32652504 + L1MA5 LINE L1 6232 6283 -17 4 1265 960 313 47 18 chr11 89191352 89191723 -32652133 - MLT2B1 LTR ERVL -31 489 115 4 1265 350 302 0 28 chr11 89191733 89191842 -32652014 + L1MA9 LINE L1 6207 6312 0 4 1265 533 238 0 0 chr11 89191873 89191978 -32651878 - MLT2B1 LTR ERVL -406 109 5 4 1265 1189 306 90 16 chr11 89192003 89192572 -32651284 - ERVL-int LTR ERVL -121 5636 5025 4 1265 566 96 0 37 chr11 89192581 89192689 -32651167 + (TCC)n Simple_repeat Simple_repeat 3 106 0 4 1265 441 306 90 16 chr11 89192689 89192878 -32650978 - ERVL-int LTR ERVL -737 4977 4775 4 1265 372 348 105 85 chr11 89192916 89193268 -32650588 + ORR1E LTR MaLR 1 359 0 4 1265 957 280 76 0 chr11 89193293 89193568 -32650288 - ERVL-int LTR ERVL -1012 4745 4450 4 1265 1428 257 213 10 chr11 89193570 89194054 -32649802 - ERVL-int LTR ERVL -2252 3462 2881 4 1265 761 336 26 30 chr11 89194170 89194403 -32649453 - B4A SINE B4 -6 286 55 4 1265 3521 289 24 30 chr11 89194425 89195110 -32648746 - ERVL-int LTR ERVL -2894 2863 2173 4 1265 906 139 231 0 chr11 89195110 89195283 -32648573 - B3 SINE B2 -2 214 2 4 1265 3521 289 24 30 chr11 89195283 89195684 -32648172 - ERVL-int LTR ERVL -3585 2172 1784 4 1265 307 270 108 31 chr11 89195730 89195860 -32647996 + YREP_Mm Unknown Unknown 157 296 -1516 4 1265 649 276 38 54 chr11 89195744 89195928 -32647928 - ID_B1 SINE B4 0 224 44 4 1265 2991 299 59 81 chr11 89195928 89196257 -32647599 - ERVL-int LTR ERVL -4136 1578 1245 4 1265 2723 114 22 20 chr11 89196257 89196661 -32647195 - MTB_Mm LTR MaLR 0 407 3 4 1265 2991 299 59 81 chr11 89196661 89196917 -32646939 - ERVL-int LTR ERVL -4470 1244 997 4 1265 1585 169 84 14 chr11 89196917 89197276 -32646580 + ORR1C2 LTR MaLR 1 384 0 4 1265 2991 299 59 81 chr11 89197276 89197339 -32646517 - ERVL-int LTR ERVL -4718 996 959 4 1265 913 247 4 64 chr11 89197339 89197573 -32646283 + ID_B1 SINE B4 2 221 -3 4 1265 2991 299 59 81 chr11 89197573 89198486 -32645370 - ERVL-int LTR ERVL -4756 958 50 4 1265 1430 299 94 40 chr11 89198516 89198997 -32644859 - MLT2B1 LTR ERVL 0 520 14 4 1265 195 42 0 0 chr11 89199017 89199041 -32644815 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 1265 1139 79 0 0 chr11 89199045 89199185 -32644671 - B1_Mus2 SINE Alu -6 141 2 4 1265 314 281 103 40 chr11 89199194 89199320 -32644536 - MER82 DNA MER2_type -466 187 54 4 1265 309 202 148 12 chr11 89200412 89200512 -32643344 + PB1D9 SINE Alu 1 113 -7 4 1265 241 293 27 0 chr11 89200556 89200631 -32643225 + B4A SINE B4 1 77 -215 4 1265 348 217 0 0 chr11 89200967 89201059 -32642797 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 1265 38 22 0 0 chr11 89201932 89201977 -32641879 + AT_rich Low_complexity Low_complexity 1 45 0 4 1265 315 236 85 11 chr11 89201980 89202074 -32641782 - PB1D10 SINE Alu -10 107 7 4 1265 590 204 18 113 chr11 89202311 89202430 -32641426 + Lx9 LINE L1 7328 7444 -200 4 1265 495 0 0 0 chr11 89202430 89202485 -32641371 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1265 590 204 18 113 chr11 89202485 89202554 -32641302 + Lx9 LINE L1 7445 7497 -147 4 1265 3043 29 3 0 chr11 89202554 89202899 -32640957 + ORR1A1 LTR MaLR 1 346 0 4 1265 590 204 18 113 chr11 89202899 89202930 -32640926 + Lx9 LINE L1 7498 7527 -117 4 1265 787 141 93 42 chr11 89202903 89203118 -32640738 + Lx9 LINE L1 7419 7644 0 4 1265 737 207 0 0 chr11 89203562 89203678 -32640178 - B1_Mur2 SINE Alu -32 117 2 4 1265 1225 86 79 11 chr11 89203693 89203870 -32639986 - B2_Mm2 SINE B2 -5 190 2 4 1265 288 130 0 0 chr11 89203872 89203918 -32639938 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1265 1136 269 39 42 chr11 89203972 89204309 -32639547 - MER2 DNA MER2_type -2 343 8 4 1265 717 179 23 11 chr11 89204471 89204646 -32639210 + (TATG)n Simple_repeat Simple_repeat 1 177 0 4 1265 630 233 0 0 chr11 89204656 89204836 -32639020 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1265 206 361 41 10 chr11 89204837 89204935 -32638921 - L2c LINE L2 -27 3360 3260 4 1265 888 286 54 31 chr11 89204935 89205195 -32638661 + B4 SINE B4 2 267 -25 4 1265 1290 60 0 0 chr11 89205201 89205470 -32638386 + (CA)n Simple_repeat Simple_repeat 1 269 0 4 1265 193 346 76 76 chr11 89205502 89205646 -32638210 - L2c LINE L2 -134 3253 3110 4 1265 391 339 0 95 chr11 89206023 89206114 -32637742 + B4A SINE B4 6 86 -206 4 1265 1355 90 0 6 chr11 89206114 89206292 -32637564 + B2_Mm2 SINE B2 1 177 -18 4 1265 391 339 0 95 chr11 89206292 89206337 -32637519 + B4A SINE B4 87 129 -163 4 1265 508 234 186 80 chr11 89206372 89206646 -32637210 + RMER20B LTR ERVK 90 392 -235 4 1265 681 254 0 14 chr11 89206850 89206994 -32636862 - ID_B1 SINE B4 -3 221 80 4 1265 502 327 90 53 chr11 89207014 89207427 -32636429 - Charlie7 DNA MER1_type -2063 549 122 4 1265 1722 96 7 106 chr11 89207502 89207805 -32636051 + ORR1B2 LTR MaLR 95 367 0 4 1265 940 244 4 78 chr11 89207950 89208181 -32635675 - B3 SINE B2 -2 214 1 4 1265 1227 54 0 0 chr11 89208324 89208471 -32635385 - B1_Mm SINE Alu 0 147 1 4 1265 342 245 46 196 chr11 89208688 89208861 -32634995 + MLT1H1 LTR MaLR 398 544 -11 4 1265 1266 90 0 0 chr11 89209061 89209239 -32634617 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 4 1265 462 79 0 0 chr11 89209256 89209319 -32634537 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1265 574 258 0 38 chr11 89209319 89209452 -32634404 - ID_B1 SINE B4 0 224 97 4 1265 245 268 103 11 chr11 89210347 89210434 -32633422 - MLT1H2 LTR MaLR -358 131 37 4 1265 328 301 0 0 chr11 89210708 89210791 -32633065 - RMER15 LTR ERVL -105 470 388 4 1265 814 306 29 77 chr11 89210799 89211150 -32632706 - Lx8 LINE L1 -249 7224 6891 4 1265 828 149 0 0 chr11 89211408 89211549 -32632307 + (TC)n Simple_repeat Simple_repeat 2 142 0 4 1265 765 249 80 15 chr11 89211730 89211930 -32631926 - B3 SINE B2 -2 214 2 4 1265 520 315 62 31 chr11 89211943 89212169 -32631687 - LTR16B LTR ERVL -63 400 168 4 1265 321 291 84 30 chr11 89212315 89212446 -32631410 - HAL1-3A_ME LINE L1 -61 2797 2660 4 1265 353 295 21 21 chr11 89212452 89212549 -32631307 - PB1D10 SINE Alu -9 108 12 4 1265 229 234 31 126 chr11 89212857 89212984 -32630872 - YREP_Mm Unknown Unknown -1415 397 283 4 1265 1376 80 0 16 chr11 89213019 89213209 -32630647 + B2_Mm2 SINE B2 1 187 -8 4 1265 295 237 64 26 chr11 89213604 89213682 -32630174 - MLT1M LTR MaLR -357 315 235 4 1265 399 370 65 0 chr11 89213987 89214203 -32629653 - MIRb SINE MIR -16 252 23 4 1265 226 355 0 26 chr11 89214551 89214629 -32629227 + MIR SINE MIR 33 108 -100 4 1265 3468 30 5 0 chr11 89215114 89215508 -32628348 + MTA_Mm LTR MaLR 1 396 0 4 1265 871 252 58 5 chr11 89215544 89215751 -32628105 - ID_B1 SINE B4 -2 222 5 4 1265 618 266 7 21 chr11 89215764 89215906 -32627950 - ID_B1 SINE B4 -1 223 84 4 1265 193 272 83 36 chr11 89216284 89216368 -32627488 + MIRb SINE MIR 37 124 -144 4 1265 294 29 0 0 chr11 89216368 89216403 -32627453 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1265 208 256 48 12 chr11 89216406 89216489 -32627367 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 4 1265 426 302 7 48 chr11 89217900 89218046 -32625810 - ID_B1 SINE B4 -1 223 84 4 1265 341 279 7 22 chr11 89218069 89218183 -32625673 - PB1D10 SINE Alu -5 115 1 4 1265 859 233 27 64 chr11 89218470 89218690 -32625166 + B3 SINE B2 4 215 -1 4 1265 1616 235 93 0 chr11 89218892 89219258 -32624598 + MTD LTR MaLR 20 419 0 4 1265 411 264 84 95 chr11 89219355 89219702 -32624154 + MLT1D LTR MaLR 89 499 -6 4 1265 189 147 0 0 chr11 89220408 89220442 -32623414 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 4 1265 209 243 69 153 chr11 89220448 89220579 -32623277 - L2c LINE L2 0 3387 3268 4 1265 649 275 72 57 chr11 89220943 89221205 -32622651 + B4A SINE B4 15 280 -12 4 1265 478 188 115 0 chr11 89221422 89221518 -32622338 + PB1D9 SINE Alu 1 107 -13 4 1265 420 360 9 14 chr11 89221791 89222008 -32621848 - L1M5 LINE L1 -334 5790 5575 4 1265 215 356 0 21 chr11 89222244 89222359 -32621497 + L2b LINE L2 2973 3085 -341 4 1265 1128 235 54 137 chr11 89223920 89224329 -32619527 - MTEa LTR MaLR -2 377 3 4 1265 257 322 81 0 chr11 89225207 89225294 -32618562 + MIR SINE MIR 164 257 -5 4 1265 327 274 29 10 chr11 89225311 89225414 -32618442 - MLT1K LTR MaLR -486 109 5 4 1265 352 272 48 44 chr11 89226769 89226968 -32616888 + MIR SINE MIR 19 225 -43 4 1265 643 108 18 0 chr11 89227112 89227223 -32616633 + (TC)n Simple_repeat Simple_repeat 1 113 0 5 1265 411 21 0 0 chr11 89227736 89227784 -32616072 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1265 288 0 0 0 chr11 89227784 89227816 -32616040 + (CAA)n Simple_repeat Simple_repeat 3 34 0 5 1265 710 281 22 22 chr11 89227818 89228000 -32615856 + B3A SINE B2 1 182 -16 5 1265 402 114 0 0 chr11 89228003 89228073 -32615783 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1265 576 0 0 0 chr11 89228073 89228137 -32615719 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1265 426 313 111 36 chr11 89228213 89228438 -32615418 - MIR SINE MIR -1 261 20 5 1265 266 336 35 0 chr11 89229771 89229887 -32613969 + L2a LINE L2 3303 3422 -4 5 1265 1240 113 23 0 chr11 89229987 89230164 -32613692 + B2_Mm2 SINE B2 2 182 -13 5 1265 267 120 0 0 chr11 89230178 89230241 -32613615 + B2_Mm2 SINE B2 39 101 -115 5 1265 258 32 0 0 chr11 89230266 89230297 -32613559 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1265 699 180 0 38 chr11 89230394 89230527 -32613329 + B1_Mur1 SINE Alu 9 136 -13 5 1265 938 75 17 17 chr11 89230528 89230704 -32613152 + (CAAAA)n Simple_repeat Simple_repeat 2 177 0 5 1265 747 176 0 0 chr11 89230786 89230945 -32612911 + (TG)n Simple_repeat Simple_repeat 1 159 0 5 1265 220 53 0 50 chr11 89231270 89231310 -32612546 + (TCC)n Simple_repeat Simple_repeat 3 40 0 5 1265 254 283 74 19 chr11 89231596 89231704 -32612152 + MIR SINE MIR 99 212 -50 5 1265 27 29 0 0 chr11 89232841 89232875 -32610981 + AT_rich Low_complexity Low_complexity 1 34 0 5 1265 235 176 18 70 chr11 89233259 89233430 -32610426 + (GGGTG)n Simple_repeat Simple_repeat 5 166 0 5 1265 649 224 128 21 chr11 89233774 89233961 -32609895 - ID_B1 SINE B4 -17 207 1 5 1265 228 296 0 0 chr11 89234133 89234187 -32609669 + MIRm SINE MIR 107 160 -116 5 1265 207 0 0 0 chr11 89234838 89234861 -32608995 + (CACCC)n Simple_repeat Simple_repeat 5 27 0 5 1265 501 17 0 0 chr11 89235130 89235188 -32608668 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1265 736 284 151 123 chr11 89236343 89236595 -32607261 - MLT1F1 LTR MaLR -78 491 236 5 1265 644 276 109 51 chr11 89236595 89236870 -32606986 - B4A SINE B4 -1 291 1 5 1265 736 284 151 123 chr11 89236870 89237031 -32606825 - MLT1F1 LTR MaLR -334 235 59 5 1265 248 313 0 35 chr11 89237031 89237117 -32606739 - ID2 SINE ID 0 83 1 5 1265 736 284 151 123 chr11 89237117 89237180 -32606676 - MLT1F1 LTR MaLR -511 58 1 5 1265 204 118 0 0 chr11 89237336 89237352 -32606504 + (TA)n Simple_repeat Simple_repeat 2 17 0 5 1265 441 0 0 0 chr11 89237352 89237401 -32606455 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1265 204 118 0 0 chr11 89237401 89237418 -32606438 + (TA)n Simple_repeat Simple_repeat 1 17 0 5 1265 1095 229 23 20 chr11 89237807 89238110 -32605746 - L1_Mur3 LINE L1 -2480 3400 3097 5 1265 1231 40 0 49 chr11 89238110 89238130 -32605726 - B2_Mm2 SINE B2 -20 175 162 5 1265 567 0 0 0 chr11 89238130 89238193 -32605663 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 5 1265 1231 40 0 49 chr11 89238193 89238355 -32605501 - B2_Mm2 SINE B2 -34 161 2 5 1265 218 258 0 43 chr11 89238458 89238527 -32605329 + CT-rich Low_complexity Low_complexity 2 67 0 5 1265 1139 79 6 0 chr11 89239341 89239518 -32604338 + (TC)n Simple_repeat Simple_repeat 1 178 0 5 1265 827 209 21 103 chr11 89239932 89240166 -32603690 - B3 SINE B2 0 216 2 5 1265 297 0 0 0 chr11 89240493 89240526 -32603330 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 1265 631 245 103 10 chr11 89240828 89241022 -32602834 - B3 SINE B2 0 216 5 5 1265 2966 276 74 32 chr11 89241521 89242689 -32601167 - Lx9 LINE L1 -29 7615 6399 5 1265 699 12 0 0 chr11 89242878 89242958 -32600898 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1265 336 321 131 15 chr11 89243004 89243203 -32600653 - MIR SINE MIR -24 238 17 5 1265 450 0 0 0 chr11 89243541 89243591 -32600265 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1265 208 154 0 25 chr11 89243914 89243954 -32599902 + C-rich Low_complexity Low_complexity 3 41 0 5 1265 191 203 17 0 chr11 89244158 89244217 -32599639 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1265 1065 122 185 31 chr11 89244458 89244653 -32599203 - URR1A DNA MER1_type -1 225 1 5 1265 458 158 16 71 chr11 89246250 89246434 -32597422 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 5 1265 307 260 0 14 chr11 89246435 89246509 -32597347 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1265 306 0 0 0 chr11 89246658 89246692 -32597164 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 5 1265 348 240 133 0 chr11 89246725 89246825 -32597031 + B4 SINE B4 1 112 -180 5 1265 696 227 30 25 chr11 89247028 89247229 -32596627 - B3 SINE B2 -2 193 1 5 1265 22 0 0 0 chr11 89247256 89247278 -32596578 + AT_rich Low_complexity Low_complexity 1 22 0 5 1265 261 0 0 0 chr11 89247648 89247677 -32596179 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1265 540 0 0 0 chr11 89248975 89249035 -32594821 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1265 212 59 29 0 chr11 89249354 89249388 -32594468 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1265 186 43 0 0 chr11 89250826 89250849 -32593007 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 5 1265 235 327 97 0 chr11 89253791 89253904 -32589952 + MER45A DNA Tip100 46 169 -9 5 1265 289 237 98 74 chr11 89254136 89254279 -32589577 + MIRc SINE MIR 20 168 -100 5 1265 281 252 9 45 chr11 89254729 89254841 -32589015 - L1M5 LINE L1 -1148 4998 4891 5 1265 320 382 97 18 chr11 89254853 89255194 -32588662 + L1M5 LINE L1 4579 4946 -1200 5 1265 183 80 0 0 chr11 89255647 89255672 -32588184 + (AGGGGG)n Simple_repeat Simple_repeat 5 29 0 5 1265 295 354 54 36 chr11 89255689 89255912 -32587944 + L1MD2 LINE L1 5506 5732 -2150 5 1265 3163 81 2 2 chr11 89256329 89256736 -32587120 + MTB_Mm LTR MaLR 1 407 0 5 1265 243 0 0 0 chr11 89256739 89256766 -32587090 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1265 284 95 0 0 chr11 89257204 89257246 -32586610 + U2 snRNA snRNA 1 42 -146 5 1265 497 219 70 6 chr11 89257356 89257506 -32586350 + L1MD2 LINE L1 5682 5839 -344 5 1265 233 301 87 20 chr11 89257723 89257872 -32585984 + L1MD2 LINE L1 6135 6293 -66 5 1265 252 122 0 0 chr11 89258902 89258943 -32584913 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1265 250 253 0 17 chr11 89258989 89259063 -32584793 - ID4_ SINE ID -49 103 31 5 158 320 317 60 69 chr11 89259723 89260101 -32583755 - MLT1C LTR MaLR -44 423 6 5 1266 665 208 82 25 chr11 89260219 89260398 -32583458 - B3A SINE B2 -14 181 1 5 1266 193 302 114 23 chr11 89261159 89261247 -32582609 + MIRb SINE MIR 98 193 -75 5 1266 21 0 0 0 chr11 89262414 89262435 -32581421 + AT_rich Low_complexity Low_complexity 1 21 0 5 1266 1264 132 31 0 chr11 89264833 89265060 -32578796 + RLTR27 LTR ERVK 76 309 0 5 1266 230 314 14 0 chr11 89265074 89265144 -32578712 + L2a LINE L2 3352 3422 -4 5 1266 386 77 37 37 chr11 89265360 89265441 -32578415 + CT-rich Low_complexity Low_complexity 4 84 0 5 1266 440 320 51 17 chr11 89265831 89266006 -32577850 - MIRb SINE MIR -83 185 5 5 1266 218 320 49 8 chr11 89267743 89267866 -32575990 + MIR3 SINE MIR 74 201 -7 5 1266 27 0 0 0 chr11 89267983 89268010 -32575846 + AT_rich Low_complexity Low_complexity 1 27 0 5 1266 225 0 0 0 chr11 89268552 89268577 -32575279 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1266 182 250 71 0 chr11 89268693 89268749 -32575107 + MIRc SINE MIR 173 232 -36 5 1266 288 324 143 88 chr11 89268816 89269249 -32574607 + MLT1C LTR MaLR 23 479 -26 5 1266 735 44 0 0 chr11 89269943 89270034 -32573822 + (TCC)n Simple_repeat Simple_repeat 3 93 0 5 1266 261 0 0 0 chr11 89270045 89270074 -32573782 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 5 1266 504 233 54 0 chr11 89271061 89271190 -32572666 - B1F1 SINE Alu -11 138 3 5 1266 715 263 59 105 chr11 89271224 89271530 -32572326 + B4A SINE B4 1 292 0 5 1266 498 46 0 0 chr11 89271553 89271618 -32572238 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1266 386 235 49 0 chr11 89271911 89272013 -32571843 - ID_B1 SINE B4 0 224 118 5 1266 243 266 215 0 chr11 89271955 89272034 -32571822 - PB1D9 SINE Alu -23 97 2 5 1266 594 241 14 7 chr11 89272179 89272317 -32571539 - B1_Mur1 SINE Alu 0 149 11 5 1266 324 0 0 0 chr11 89272399 89272435 -32571421 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1266 512 278 117 22 chr11 89272452 89272632 -32571224 - B4 SINE B4 0 292 96 5 1266 537 16 0 0 chr11 89273953 89274015 -32569841 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1266 778 151 13 86 chr11 89275388 89275540 -32568316 + B1_Mus1 SINE Alu 3 143 -5 5 1266 1092 94 4 8 chr11 89275553 89275800 -32568056 + (GAA)n Simple_repeat Simple_repeat 1 245 0 5 1266 193 349 92 68 chr11 89277484 89277810 -32566046 + L2b LINE L2 3037 3370 -5 5 1266 21 0 0 0 chr11 89278964 89278985 -32564871 + AT_rich Low_complexity Low_complexity 1 21 0 5 1266 543 324 6 0 chr11 89279364 89279543 -32564313 + MER5A DNA MER1_type 9 188 -1 5 1266 239 200 83 0 chr11 89279620 89279680 -32564176 + MER103 DNA DNA 1 65 -101 5 1266 204 278 0 0 chr11 89279959 89280013 -32563843 + L2a LINE L2 3115 3168 -258 5 1266 324 0 0 0 chr11 89280369 89280405 -32563451 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1266 279 0 0 0 chr11 89280405 89280435 -32563421 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1266 753 33 0 0 chr11 89280773 89280865 -32562991 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 5 1266 309 100 0 0 chr11 89282027 89282077 -32561779 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1266 381 231 40 40 chr11 89288267 89288393 -32555463 + L1MA7 LINE L1 6116 6241 -50 5 1266 271 339 114 65 chr11 89289251 89289576 -32554280 + L3 LINE CR1 2946 3286 -1203 6 1266 246 271 71 20 chr11 89290513 89290611 -32553245 - B1F SINE Alu -3 146 44 6 1266 289 327 37 28 chr11 89290642 89290749 -32553107 - L2b LINE L2 -21 3354 3247 6 1266 328 320 46 111 chr11 89290898 89291238 -32552618 + L2c LINE L2 3054 3366 -9 6 1266 363 349 45 23 chr11 89291412 89291632 -32552224 + Charlie8 DNA MER1_type 1 225 -2203 6 1266 1286 72 42 6 chr11 89291738 89291906 -32551950 - B2_Mm2 SINE B2 -19 176 3 6 1266 522 323 35 24 chr11 89292103 89292357 -32551499 - L1MB5 LINE L1 -212 5962 5706 6 1266 203 286 184 12 chr11 89293192 89293375 -32550481 - MIRb SINE MIR -21 247 31 6 1266 564 15 0 0 chr11 89294083 89294148 -32549708 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1266 532 252 31 0 chr11 89294849 89294976 -32548880 + RSINE1 SINE B4 16 146 -19 6 1266 256 284 32 72 chr11 89295000 89295125 -32548731 - Arthur1A DNA Tip100 -57 120 1 6 1266 228 320 78 0 chr11 89295125 89295228 -32548628 + MIRc SINE MIR 86 196 -72 6 1266 464 326 98 45 chr11 89295357 89295694 -32548162 + ORR1E LTR MaLR 1 355 -4 6 1266 650 72 10 0 chr11 89296899 89296996 -32546860 + (TG)n Simple_repeat Simple_repeat 2 99 0 6 1266 405 39 0 0 chr11 89297309 89297360 -32546496 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1266 185 271 17 17 chr11 89297765 89297825 -32546031 + MIR SINE MIR 153 212 -50 6 1266 993 78 20 0 chr11 89298680 89298833 -32545023 + (TTCC)n Simple_repeat Simple_repeat 2 157 0 6 1266 599 246 49 0 chr11 89298845 89298967 -32544889 - B1_Mur1 SINE Alu -21 128 1 6 1266 257 290 38 68 chr11 89298851 89298984 -32544872 - MT2B LTR ERVL -323 278 150 6 1266 540 119 178 0 chr11 89299514 89299615 -32544241 - B1_Mus1 SINE Alu 0 148 30 6 1266 382 246 41 103 chr11 89299966 89300111 -32543745 - B3A SINE B2 0 198 63 6 1266 498 189 57 0 chr11 89300106 89300212 -32543644 - B3A SINE B2 -84 114 3 6 1266 570 29 0 0 chr11 89301596 89301664 -32542192 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1266 368 183 11 0 chr11 89302849 89302942 -32540914 + (TA)n Simple_repeat Simple_repeat 1 94 0 6 1266 459 257 13 46 chr11 89303470 89303621 -32540235 + ORR1E LTR MaLR 4 149 -210 6 1266 467 244 83 8 chr11 89304212 89304344 -32539512 + Lx9 LINE L1 7052 7193 -451 6 1266 420 319 113 103 chr11 89304521 89305115 -32538741 + HAL1 LINE L1 313 912 -1595 6 1266 4304 105 120 6 chr11 89305132 89305791 -32538065 + RMER19A LTR ERVK 1 734 -3 6 1266 344 242 19 87 chr11 89306109 89306213 -32537643 + PB1D7 SINE Alu 23 119 -1 6 1266 251 363 48 7 chr11 89310161 89310308 -32533548 + MIRb SINE MIR 101 253 -15 6 1266 360 0 0 0 chr11 89312177 89312217 -32531639 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1266 874 210 213 8 chr11 89312965 89313200 -32530656 - B4 SINE B4 -8 284 2 6 1266 234 91 0 0 chr11 89313284 89313317 -32530539 + (TTA)n Simple_repeat Simple_repeat 2 34 0 6 1266 312 333 43 46 chr11 89313405 89313685 -32530171 - L1M5 LINE L1 -330 5794 5516 6 1266 189 244 86 32 chr11 89314110 89314203 -32529653 - MIRb SINE MIR -80 188 91 6 1266 246 182 29 39 chr11 89314663 89314766 -32529090 + CT-rich Low_complexity Low_complexity 4 105 0 6 1266 237 260 0 0 chr11 89314765 89314842 -32529014 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1266 300 263 52 35 chr11 89314856 89315029 -32528827 - Lx7 LINE L1 -8 7688 7513 6 1266 813 163 0 0 chr11 89315044 89315222 -32528634 + CT-rich Low_complexity Low_complexity 2 179 0 6 1266 219 133 0 0 chr11 89315435 89315480 -32528376 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 6 1266 207 225 0 0 chr11 89315745 89315785 -32528071 + T-rich Low_complexity Low_complexity 1 40 0 6 1266 223 162 49 12 chr11 89316572 89316653 -32527203 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 1266 421 90 11 43 chr11 89317467 89317560 -32526296 + (AGGGGG)n Simple_repeat Simple_repeat 3 92 0 6 1266 30 59 0 0 chr11 89318162 89318213 -32525643 + AT_rich Low_complexity Low_complexity 1 51 0 6 1266 29 47 0 0 chr11 89319565 89319608 -32524248 + AT_rich Low_complexity Low_complexity 1 43 0 6 1266 433 185 0 0 chr11 89319751 89319832 -32524024 - B1_Mur1 SINE Alu -13 136 56 6 1266 605 260 0 0 chr11 89319839 89319966 -32523890 + B3 SINE B2 1 127 -89 6 1266 279 202 34 0 chr11 89319966 89320055 -32523801 + (CATA)n Simple_repeat Simple_repeat 3 94 0 6 1266 1203 177 0 9 chr11 89320418 89320635 -32523221 - URR1B DNA MER1_type -4 221 7 6 1266 358 252 15 61 chr11 89322466 89322597 -32521259 + MLT1A1 LTR MaLR 284 408 0 6 1266 507 222 0 0 chr11 89324400 89324517 -32519339 + (TA)n Simple_repeat Simple_repeat 1 117 0 6 1266 219 36 0 0 chr11 89325211 89325239 -32518617 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1266 316 268 12 0 chr11 89325418 89325500 -32518356 + MER63C DNA AcHobo 331 413 -517 6 1266 401 322 56 39 chr11 89325522 89325576 -32518280 + MER58C DNA MER1_type 29 82 -133 6 1266 891 0 0 0 chr11 89325576 89325675 -32518181 + (TTC)n Simple_repeat Simple_repeat 2 100 0 6 1266 401 322 56 39 chr11 89325675 89325798 -32518058 + MER58C DNA MER1_type 83 209 -6 6 1266 236 197 0 57 chr11 89325790 89325860 -32517996 + MER63C DNA AcHobo 396 461 -469 6 1266 628 247 0 46 chr11 89325864 89326017 -32517839 + RSINE1 SINE B4 1 146 -19 6 1266 878 330 32 29 chr11 89326088 89326497 -32517359 + MER63C DNA AcHobo 470 879 -51 6 1266 27 29 0 0 chr11 89327042 89327076 -32516780 + AT_rich Low_complexity Low_complexity 1 34 0 6 1266 1046 156 101 14 chr11 89327692 89327900 -32515956 - URR1A DNA MER1_type 0 226 1 6 1266 232 48 48 0 chr11 89328127 89328169 -32515687 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 6 1266 326 216 6 50 chr11 89328723 89328884 -32514972 + CT-rich Low_complexity Low_complexity 1 154 0 6 1266 403 242 55 61 chr11 89329144 89329307 -32514549 - L1MA9 LINE L1 -35 6277 6116 6 1266 185 395 0 0 chr11 89329683 89329764 -32514092 - MIRb SINE MIR -69 199 119 6 1266 941 86 25 0 chr11 89330158 89330321 -32513535 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 6 1266 594 0 0 0 chr11 89333535 89333601 -32510255 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1266 959 276 81 0 chr11 89333609 89333870 -32509986 - B4 SINE B4 -9 283 2 6 1266 361 195 180 104 chr11 89333969 89334152 -32509704 + B3A SINE B2 2 198 0 6 1266 471 250 23 70 chr11 89334170 89334261 -32509595 + MER2 DNA MER2_type 98 182 -163 6 1266 1741 164 74 49 chr11 89334261 89334626 -32509230 + ORR1C1 LTR MaLR 3 376 -2 6 1266 471 250 23 70 chr11 89334626 89334706 -32509150 + MER2 DNA MER2_type 183 261 -84 6 1266 207 0 0 0 chr11 89334743 89334766 -32509090 + (TGG)n Simple_repeat Simple_repeat 2 24 0 6 1266 1710 229 28 8 chr11 89335298 89335686 -32508170 + MTC LTR MaLR 18 413 -8 6 1266 237 180 0 0 chr11 89336163 89336213 -32507643 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1266 200 268 0 0 chr11 89336468 89336509 -32507347 + polypyrimidine Low_complexity Low_complexity 1 41 0 6 1266 280 265 0 0 chr11 89337218 89337286 -32506570 + (TTCA)n Simple_repeat Simple_repeat 2 69 0 6 1266 321 82 0 0 chr11 89338113 89338162 -32505694 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1266 362 259 20 86 chr11 89339432 89339584 -32504272 - L1MDa LINE L1 -6436 197 56 6 1266 950 178 54 45 chr11 89340446 89340669 -32503187 - URR1B DNA MER1_type 0 225 1 6 1266 216 228 18 0 chr11 89340860 89340917 -32502939 + T-rich Low_complexity Low_complexity 6 63 0 6 1266 375 292 127 56 chr11 89340997 89341265 -32502591 - B4A SINE B4 -4 288 2 6 1266 788 291 123 35 chr11 89341708 89342164 -32501692 + L5 LINE RTE 1769 2264 -1 6 1266 439 324 7 7 chr11 89342956 89343093 -32500763 - ID_B1 SINE B4 -4 220 84 6 1266 195 42 0 0 chr11 89343219 89343243 -32500613 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 6 1266 212 367 0 0 chr11 89343865 89343944 -32499912 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 1266 657 0 0 0 chr11 89343991 89344064 -32499792 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 6 1266 226 180 40 0 chr11 89344071 89344121 -32499735 - Lx6 LINE L1 -15 7445 7394 6 1266 943 150 120 16 chr11 89344097 89344280 -32499576 + L1_Mur2 LINE L1 4079 4280 -1597 6 1266 695 269 41 18 chr11 89344328 89344548 -32499308 - B4 SINE B4 -65 227 3 6 1266 551 88 0 11 chr11 89344630 89344722 -32499134 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1266 305 333 0 16 chr11 89344749 89344877 -32498979 - PB1 SINE Alu 0 127 2 6 1266 697 227 82 52 chr11 89344970 89345038 -32498818 + L1_Mur3 LINE L1 5205 5275 -865 6 1266 621 40 0 0 chr11 89345038 89345114 -32498742 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1266 697 214 76 44 chr11 89345114 89345295 -32498561 + L1_Mur3 LINE L1 5248 5436 -444 6 1266 183 255 21 21 chr11 89345484 89345532 -32498324 - MIR SINE MIR -168 94 47 6 1266 794 265 11 5 chr11 89345722 89345912 -32497944 - B3A SINE B2 -6 192 2 6 1266 23 54 0 0 chr11 89346292 89346329 -32497527 + AT_rich Low_complexity Low_complexity 1 37 0 6 1266 450 53 0 0 chr11 89347397 89347454 -32496402 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1266 244 376 10 0 chr11 89347649 89347750 -32496106 + L2b LINE L2 3272 3373 -2 6 1266 273 274 0 0 chr11 89347936 89348031 -32495825 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1266 439 277 149 50 chr11 89348066 89348328 -32495528 - B4 SINE B4 -4 288 1 6 1266 1107 206 179 19 chr11 89349542 89349849 -32494007 - MTEa LTR MaLR -1 378 23 6 1266 270 287 93 0 chr11 89349877 89349985 -32493871 + MIR SINE MIR 78 195 -67 6 1266 205 304 94 17 chr11 89350775 89350892 -32492964 - L2b LINE L2 -284 3091 2966 6 1266 297 0 0 0 chr11 89350898 89350931 -32492925 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1266 1300 311 22 51 chr11 89351349 89351941 -32491915 - L1MD1 LINE L1 -246 5996 5422 7 1266 549 0 0 0 chr11 89352279 89352340 -32491516 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1266 680 232 52 0 chr11 89352563 89352718 -32491138 + RSINE1 SINE B4 3 165 0 7 1266 25 65 0 0 chr11 89353087 89353133 -32490723 + AT_rich Low_complexity Low_complexity 1 46 0 7 1266 3090 278 42 34 chr11 89353313 89354271 -32489585 - Lx7 LINE L1 -469 7227 6263 7 1266 3069 242 21 9 chr11 89354270 89355183 -32488673 - Lx7 LINE L1 -1667 6029 5100 7 1266 2998 202 62 121 chr11 89355171 89355385 -32488471 + Lx7 LINE L1 4163 4378 -1502 7 1266 266 250 27 14 chr11 89355385 89355458 -32488398 + B4A SINE B4 216 289 -3 7 1266 2998 202 62 121 chr11 89355458 89356173 -32487683 + Lx7 LINE L1 4379 5105 -775 7 1266 918 269 14 17 chr11 89356251 89356538 -32487318 + B4A SINE B4 2 287 -5 7 1266 477 0 0 0 chr11 89356542 89356595 -32487261 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1266 770 218 57 43 chr11 89356675 89356886 -32486970 + B3 SINE B2 3 216 0 7 1266 759 241 64 0 chr11 89357447 89357634 -32486222 - B3 SINE B2 -14 202 4 7 1266 264 333 0 11 chr11 89357758 89357852 -32486004 + L1M5 LINE L1 3960 4052 -2094 7 1266 2097 102 11 77 chr11 89357961 89358311 -32485545 + ORR1A2 LTR MaLR 1 327 0 7 1266 195 42 0 0 chr11 89358977 89359001 -32484855 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1266 551 300 7 28 chr11 89359011 89359155 -32484701 + RSINE1 SINE B4 15 155 -10 7 1266 198 103 0 0 chr11 89359155 89359184 -32484672 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1266 351 250 94 8 chr11 89359415 89359532 -32484324 + ORR1E LTR MaLR 1 127 -232 7 1266 1326 83 0 16 chr11 89360447 89360631 -32483225 - B2_Mm2 SINE B2 -14 181 1 7 1266 498 225 92 0 chr11 89361422 89361542 -32482314 - B1F1 SINE Alu -6 143 13 7 1266 268 194 112 25 chr11 89361699 89361865 -32481991 - RMER17D LTR ERVK -446 443 262 7 1266 949 113 0 11 chr11 89361865 89362044 -32481812 + (GA)n Simple_repeat Simple_repeat 2 178 0 7 1266 268 194 112 25 chr11 89362044 89362073 -32481783 - RMER17D LTR ERVK -628 261 231 7 1266 1312 24 6 6 chr11 89362845 89363010 -32480846 + (TTC)n Simple_repeat Simple_repeat 2 166 0 7 1266 254 29 0 28 chr11 89363031 89363067 -32480789 + (TCC)n Simple_repeat Simple_repeat 3 37 0 7 1266 196 302 115 0 chr11 89364157 89364253 -32479603 + MIR SINE MIR 135 241 -21 7 1266 315 0 0 0 chr11 89365071 89365106 -32478750 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1266 534 237 96 28 chr11 89365420 89365598 -32478258 - B4A SINE B4 -57 235 46 7 1266 423 283 102 39 chr11 89369439 89369693 -32474163 - Charlie19a DNA Charlie -64 322 53 7 1266 275 85 0 21 chr11 89369699 89369747 -32474109 + (ATTG)n Simple_repeat Simple_repeat 2 48 0 7 1266 221 273 55 0 chr11 89369759 89369814 -32474042 - MIR3 SINE MIR -42 166 109 7 1266 205 29 29 29 chr11 89370359 89370394 -32473462 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 7 1266 462 292 84 0 chr11 89370634 89370812 -32473044 - B3A SINE B2 -5 193 1 7 1266 309 228 37 4 chr11 89370953 89371038 -32472818 - B1_Mur4 SINE Alu -21 96 3 7 1266 806 129 34 48 chr11 89371330 89371476 -32472380 - Lx5 LINE L1 -1201 5849 5706 7 1266 425 296 101 10 chr11 89372920 89373128 -32470728 - MER33 DNA MER1_type -28 296 70 7 1266 21 0 0 0 chr11 89373132 89373153 -32470703 + AT_rich Low_complexity Low_complexity 1 21 0 7 1266 1603 286 92 95 chr11 89373166 89374680 -32469176 - L1MA7 LINE L1 -10 6281 4789 7 1266 378 293 35 49 chr11 89375105 89375275 -32468581 + MLT1F2 LTR MaLR 133 299 -270 7 1266 214 274 74 88 chr11 89375465 89375584 -32468272 - MIRc SINE MIR -111 157 26 7 1266 405 288 117 45 chr11 89375875 89376122 -32467734 + L1MA9 LINE L1 5816 6080 -232 7 1266 268 310 0 0 chr11 89376127 89376198 -32467658 + L1MA9 LINE L1 6182 6252 -60 7 1266 481 267 128 24 chr11 89376716 89376927 -32466929 - MARNA DNA Mariner -346 240 8 7 1266 961 310 61 42 chr11 89377921 89378399 -32465457 + MER44B DNA MER2_type 38 524 -26 7 1266 385 248 8 131 chr11 89378614 89378798 -32465058 + RMER17B LTR ERVK 223 399 -559 7 1266 1201 74 3 6 chr11 89378798 89378968 -32464888 + (TTCTC)n Simple_repeat Simple_repeat 1 172 -172 7 1266 1201 74 3 6 chr11 89378976 89379144 -32464712 + (TTCTC)n Simple_repeat Simple_repeat 173 344 0 7 1266 385 263 18 108 chr11 89379144 89379232 -32464624 + RMER17B LTR ERVK 400 488 -418 7 1266 288 152 38 12 chr11 89379233 89379313 -32464543 + CT-rich Low_complexity Low_complexity 3 84 0 7 1266 236 221 160 34 chr11 89379313 89379519 -32464337 + RMER17C LTR ERVK 90 321 -89 7 1266 318 327 50 12 chr11 89379856 89380017 -32463839 + MIRb SINE MIR 51 217 -51 7 1266 319 336 0 7 chr11 89380035 89380182 -32463674 + (TG)n Simple_repeat Simple_repeat 2 147 0 7 1266 797 273 65 25 chr11 89380183 89380196 -32463660 - B4 SINE B4 -1 291 279 7 1266 264 30 0 0 chr11 89380196 89380229 -32463627 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1266 797 273 65 25 chr11 89380229 89380493 -32463363 - B4 SINE B4 -14 278 4 7 1266 1937 210 34 26 chr11 89380981 89381397 -32462459 + MTD LTR MaLR 1 419 0 7 1266 783 270 5 48 chr11 89381750 89381956 -32461900 - ID_B1 SINE B4 -26 198 2 7 1266 225 238 0 0 chr11 89382279 89382321 -32461535 + polypyrimidine Low_complexity Low_complexity 1 42 0 7 1266 249 33 0 0 chr11 89382490 89382520 -32461336 + (TGG)n Simple_repeat Simple_repeat 2 31 0 7 1266 357 149 0 0 chr11 89382849 89382916 -32460940 + (CAA)n Simple_repeat Simple_repeat 2 68 0 7 1266 357 224 93 17 chr11 89382972 89383090 -32460766 + L1MB8 LINE L1 6021 6147 -31 7 1266 210 98 39 19 chr11 89383199 89383251 -32460605 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 7 1266 200 319 8 34 chr11 89383781 89383898 -32459958 + L2a LINE L2 3225 3338 -88 7 1266 243 259 22 45 chr11 89384821 89384910 -32458946 + MER103 DNA DNA 26 112 -54 7 1266 236 289 58 46 chr11 89385233 89385320 -32458536 + MLT2B2 LTR ERVL 22 109 -406 7 1266 297 238 26 71 chr11 89385600 89385713 -32458143 + MTEb LTR MaLR 272 379 0 7 1266 287 360 7 29 chr11 89386805 89386945 -32456911 + L4 LINE RTE 1698 1834 -195 7 1266 575 229 6 0 chr11 89387105 89387275 -32456581 + (TA)n Simple_repeat Simple_repeat 2 172 0 7 1266 495 0 0 0 chr11 89387609 89387664 -32456192 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1266 299 45 45 0 chr11 89388818 89388862 -32454994 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 7 1266 312 288 15 60 chr11 89390438 89390571 -32453285 + L1M4 LINE L1 285 411 -6131 7 158 746 307 121 21 chr11 89390701 89391463 -32452393 + L1M4 LINE L1 581 1419 -5123 7 1267 301 285 192 47 chr11 89391644 89391920 -32451936 + ORR1D2 LTR MaLR 21 336 -34 7 1267 341 328 70 102 chr11 89391956 89392397 -32451459 + L1M4 LINE L1 5078 5504 -1140 7 1267 318 26 0 0 chr11 89392468 89392507 -32451349 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1267 419 324 63 47 chr11 89392507 89392760 -32451096 - B4A SINE B4 -23 269 13 7 1267 262 264 84 21 chr11 89392760 89392903 -32450953 + L1M4 LINE L1 5502 5653 -991 7 1267 627 265 39 35 chr11 89393346 89393549 -32450307 - B3 SINE B2 -12 204 1 7 1267 355 321 103 73 chr11 89393734 89393951 -32449905 - MIR SINE MIR -39 229 1 7 1267 270 0 0 0 chr11 89394558 89394588 -32449268 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1267 491 296 39 7 chr11 89394611 89394764 -32449092 - RSINE1 SINE B4 -7 158 1 7 1267 690 291 77 31 chr11 89395149 89395408 -32448448 - MLT1A0 LTR MaLR 0 365 95 7 1267 197 300 17 0 chr11 89395587 89395647 -32448209 - MIR SINE MIR -186 76 16 7 1267 336 330 17 0 chr11 89396076 89396194 -32447662 + L1MA5 LINE L1 6181 6300 0 7 1267 990 259 42 19 chr11 89396316 89396580 -32447276 + Lx8 LINE L1 6614 6883 -590 7 1267 677 307 67 41 chr11 89396627 89397014 -32446842 + Lx8 LINE L1 6996 7392 -81 7 1267 1091 147 147 0 chr11 89397279 89397476 -32446380 + URR1A DNA MER1_type 1 226 0 7 1267 288 96 79 40 chr11 89399554 89399630 -32444226 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 7 1267 462 18 0 0 chr11 89400058 89400113 -32443743 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1267 468 0 0 0 chr11 89400744 89400796 -32443060 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1267 360 0 0 0 chr11 89400796 89400835 -32443021 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1267 742 248 106 0 chr11 89401248 89401446 -32442410 + ID_B1 SINE B4 3 221 -3 7 1267 315 0 0 0 chr11 89401632 89401667 -32442189 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1267 414 301 12 77 chr11 89401687 89401856 -32442000 - RSINE1 SINE B4 -5 160 3 7 1267 365 331 109 50 chr11 89402809 89403212 -32440644 + L2b LINE L2 2932 3358 -17 7 1267 243 0 0 0 chr11 89404422 89404449 -32439407 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1267 532 260 97 0 chr11 89404632 89404828 -32439028 - L1M3 LINE L1 -1306 4834 4620 7 1267 729 165 18 13 chr11 89404828 89405049 -32438807 + CT-rich Low_complexity Low_complexity 1 221 0 7 1267 275 180 33 0 chr11 89405063 89405124 -32438732 - L1M3 LINE L1 -1511 4629 4567 7 1267 280 362 7 35 chr11 89405587 89405730 -32438126 + MIR3 SINE MIR 43 181 -27 7 1267 372 288 137 0 chr11 89407355 89407508 -32436348 - MIRb SINE MIR -79 189 16 7 1267 202 49 22 89 chr11 89408059 89408104 -32435752 + G-rich Low_complexity Low_complexity 6 47 0 7 1267 241 89 44 0 chr11 89408308 89408353 -32435503 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1267 1135 62 17 17 chr11 89409808 89409988 -32433868 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 7 1267 663 48 0 0 chr11 89409988 89410071 -32433785 + (GA)n Simple_repeat Simple_repeat 1 83 0 7 1267 287 182 0 29 chr11 89410065 89410133 -32433723 + A-rich Low_complexity Low_complexity 5 70 0 7 1267 372 43 0 0 chr11 89411024 89411070 -32432786 + (CATA)n Simple_repeat Simple_repeat 2 47 0 7 1267 386 262 0 7 chr11 89411993 89412143 -32431713 + (TG)n Simple_repeat Simple_repeat 2 150 0 7 1267 298 276 41 0 chr11 89412145 89412243 -32431613 + (TATG)n Simple_repeat Simple_repeat 2 103 0 7 1267 1092 234 59 19 chr11 89412248 89412518 -32431338 - B4A SINE B4 -9 283 3 7 1267 314 189 9 26 chr11 89412555 89412669 -32431187 + (CA)n Simple_repeat Simple_repeat 2 113 0 7 1267 327 200 168 0 chr11 89413217 89413312 -32430544 - B1F SINE Alu -5 144 34 8 1267 1037 280 103 36 chr11 89413326 89413823 -32430033 - MER45R DNA Tip100 -223 1358 829 8 1267 454 285 118 50 chr11 89413828 89414090 -32429766 + B4 SINE B4 2 281 -11 8 1267 358 312 0 28 chr11 89414110 89414288 -32429568 + (CA)n Simple_repeat Simple_repeat 2 174 0 8 1267 414 206 80 7 chr11 89414313 89414450 -32429406 - MER45R DNA Tip100 -760 821 675 8 1267 868 261 84 4 chr11 89414909 89415159 -32428697 - B4 SINE B4 -21 271 2 8 1267 558 309 30 4 chr11 89415164 89415395 -32428461 + L1MA9 LINE L1 4532 4768 -1372 8 1267 39165 7 1 0 chr11 89415396 89420928 -32422928 + L1Md_A LINE L1 54 5586 -297 8 1267 9175 4 0 0 chr11 89420928 89421923 -32421933 + L1Md_A LINE L1 5587 6581 -1 8 1267 815 298 125 29 chr11 89421924 89422485 -32421371 + L1MA9 LINE L1 4764 5388 -755 8 1267 1200 35 0 0 chr11 89422485 89422630 -32421226 + (GGAAA)n Simple_repeat Simple_repeat 5 149 0 8 1267 290 207 9 140 chr11 89422630 89422678 -32421178 + L1MA9 LINE L1 5384 5432 -859 8 1267 351 233 228 24 chr11 89422701 89422813 -32421043 + RSINE1 SINE B4 6 142 -23 8 1267 2526 89 3 0 chr11 89422813 89423139 -32420717 - ORR1A2 LTR MaLR 0 327 1 8 1267 1007 189 45 5 chr11 89423186 89423388 -32420468 + B3 SINE B2 7 216 0 8 1267 1310 249 174 45 chr11 89423410 89424047 -32419809 + L1MA9 LINE L1 5470 6200 -100 8 1267 847 286 13 9 chr11 89424082 89424309 -32419547 + B4A SINE B4 2 229 -63 8 1267 535 207 45 108 chr11 89424309 89424466 -32419390 + B1_Mur1 SINE Alu 1 147 -2 8 1267 382 206 107 11 chr11 89424683 89424860 -32418996 + L1MD LINE L1 3104 3297 -2849 8 1267 298 143 32 0 chr11 89424864 89424927 -32418929 + GA-rich Low_complexity Low_complexity 3 67 0 8 1267 586 282 64 48 chr11 89424931 89425296 -32418560 + L1MD LINE L1 3297 3669 -2471 8 1267 407 125 14 0 chr11 89425301 89425373 -32418483 + (GA)n Simple_repeat Simple_repeat 1 73 0 8 1267 303 196 2 25 chr11 89425373 89425459 -32418397 + L1MD LINE L1 3669 3754 -2392 8 1267 681 266 77 46 chr11 89425454 89425714 -32418142 + Lx8 LINE L1 7089 7356 -117 8 1267 269 289 113 27 chr11 89425775 89425960 -32417896 + L1MD LINE L1 3878 4078 -2068 8 1267 489 249 76 45 chr11 89426019 89426217 -32417639 + L1MD LINE L1 4539 4742 -1404 8 1267 713 258 47 62 chr11 89426253 89426509 -32417347 - MTE2a LTR MaLR -1 378 127 8 1267 404 271 54 4 chr11 89426515 89426678 -32417178 + L1MD LINE L1 4751 4920 -1220 8 1267 289 267 22 11 chr11 89426700 89426791 -32417065 + B4A SINE B4 6 97 -195 8 1267 914 160 7 0 chr11 89426792 89426936 -32416920 + B1_Mur3 SINE Alu 4 148 -1 8 1267 646 262 32 70 chr11 89426968 89427153 -32416703 + B4A SINE B4 83 260 -32 8 1267 492 18 0 0 chr11 89427153 89427210 -32416646 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1267 216 0 0 0 chr11 89427210 89427233 -32416623 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1267 705 305 60 43 chr11 89427294 89427691 -32416165 + L1MD LINE L1 4963 5366 -780 8 1267 243 0 0 0 chr11 89427847 89427874 -32415982 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1267 519 17 0 0 chr11 89427874 89427933 -32415923 + (GA)n Simple_repeat Simple_repeat 2 61 0 8 1267 299 241 0 25 chr11 89427936 89428017 -32415839 + GA-rich Low_complexity Low_complexity 1 79 0 8 1267 278 206 123 0 chr11 89428474 89428547 -32415309 + L1MA5 LINE L1 5848 5929 -371 8 1267 531 0 0 0 chr11 89430307 89430366 -32413490 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 1267 492 273 253 42 chr11 89430407 89430648 -32413208 + B4 SINE B4 1 292 0 8 1267 1162 245 25 41 chr11 89430956 89431318 -32412538 - MER121 Unknown Unknown -39 373 18 8 1267 431 273 9 26 chr11 89432077 89432190 -32411666 + ID_B1 SINE B4 2 112 -112 8 1267 269 256 11 43 chr11 89432234 89432262 -32411594 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 8 1267 410 0 20 0 chr11 89432262 89432312 -32411544 + (CATAT)n Simple_repeat Simple_repeat 2 52 0 8 1267 269 256 11 43 chr11 89432312 89432377 -32411479 + (TCTCTG)n Simple_repeat Simple_repeat 6 70 0 8 1267 304 339 57 0 chr11 89432884 89433008 -32410848 + B4A SINE B4 89 219 -73 8 1267 378 295 18 0 chr11 89433007 89433119 -32410737 + B4A SINE B4 164 277 -15 8 1267 288 320 67 84 chr11 89434009 89434248 -32409608 + B4A SINE B4 3 237 -55 8 1267 25 0 0 0 chr11 89434324 89434349 -32409507 + AT_rich Low_complexity Low_complexity 1 25 0 8 1267 284 272 39 10 chr11 89434453 89434557 -32409299 - MER5A DNA MER1_type -63 126 20 8 1267 256 228 62 12 chr11 89434751 89434831 -32409025 - L1MA5 LINE L1 -320 5977 5894 8 1267 789 259 4 40 chr11 89435968 89436193 -32407663 + ID_B1 SINE B4 7 223 -1 8 1267 927 118 7 52 chr11 89436241 89436426 -32407430 - Lx5 LINE L1 -75 5802 5620 8 1267 895 86 0 0 chr11 89436425 89436541 -32407315 + Lx4B LINE L1 5774 5889 -1169 8 1267 856 181 0 13 chr11 89436524 89436681 -32407175 + Lx3C LINE L1 6490 6644 -332 8 1267 892 212 102 0 chr11 89436693 89436922 -32406934 + Lx3C LINE L1 6744 7008 0 8 1267 1140 137 23 0 chr11 89436936 89437111 -32406745 - B2_Mm2 SINE B2 -16 179 1 8 1267 401 36 18 0 chr11 89437213 89437268 -32406588 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1267 237 261 43 14 chr11 89437324 89437394 -32406462 + MLT1A1 LTR MaLR 41 112 -296 8 1267 319 308 154 0 chr11 89437685 89437828 -32406028 - MER5A DNA MER1_type -19 170 6 8 1267 190 208 19 19 chr11 89439320 89439374 -32404482 - L2a LINE L2 -5 3421 3368 8 1267 748 246 26 119 chr11 89439813 89439959 -32403897 + B4 SINE B4 83 218 -74 8 1267 645 14 0 0 chr11 89439959 89440033 -32403823 + (CAAGA)n Simple_repeat Simple_repeat 5 78 0 8 1267 748 246 26 119 chr11 89440033 89440112 -32403744 + B4 SINE B4 219 287 -5 8 1267 405 0 0 0 chr11 89440162 89440207 -32403649 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1267 866 60 8 0 chr11 89440239 89440356 -32403500 + (TG)n Simple_repeat Simple_repeat 1 118 0 8 1267 239 333 9 19 chr11 89443304 89443411 -32400445 + GA-rich Low_complexity Low_complexity 3 108 0 8 1267 393 117 0 0 chr11 89444681 89444741 -32399115 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1267 537 340 0 24 chr11 89444742 89444908 -32398948 - B4A SINE B4 -128 164 3 8 1267 183 349 49 77 chr11 89445000 89445143 -32398713 - MIRb SINE MIR -45 223 85 8 1267 194 228 143 98 chr11 89445258 89445370 -32398486 + MIRc SINE MIR 81 197 -71 8 1267 261 283 22 122 chr11 89445657 89445818 -32398038 + MLT1G1 LTR MaLR 159 305 -290 8 1267 466 277 6 88 chr11 89446432 89446602 -32397254 + B3A SINE B2 43 198 0 8 1267 269 150 0 16 chr11 89446636 89446677 -32397179 + polypurine Low_complexity Low_complexity 1 41 0 8 1267 1068 107 11 11 chr11 89446677 89446857 -32396999 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 8 1267 269 150 0 16 chr11 89446857 89446876 -32396980 + polypurine Low_complexity Low_complexity 42 59 0 8 1267 429 90 0 0 chr11 89448043 89448110 -32395746 + (TC)n Simple_repeat Simple_repeat 2 68 0 8 1267 447 43 43 0 chr11 89448110 89448180 -32395676 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 1267 541 327 79 71 chr11 89448330 89448597 -32395259 + B4 SINE B4 2 270 -22 8 1267 186 103 0 0 chr11 89448650 89448679 -32395177 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 8 1267 574 300 73 61 chr11 89448682 89448927 -32394929 - MLT2B2 LTR ERVL -254 261 14 8 1267 267 349 32 0 chr11 89449081 89449207 -32394649 - MER5B DNA MER1_type -20 158 29 8 1267 8334 75 3 1 chr11 89449211 89450339 -32393517 - L1_Mus3 LINE L1 -1 6637 5508 8 1267 468 51 0 0 chr11 89451628 89451687 -32392169 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1267 594 271 43 72 chr11 89452637 89452872 -32390984 - MTE2a-int LTR MaLR -305 1275 1048 8 1267 234 241 111 0 chr11 89452882 89452936 -32390920 - MTE2a-int LTR MaLR -776 804 745 8 1267 1268 270 66 14 chr11 89453008 89453372 -32390484 - MTE2a-int LTR MaLR -1190 390 8 8 1267 23 0 0 0 chr11 89453372 89453395 -32390461 + AT_rich Low_complexity Low_complexity 1 23 0 8 1267 893 273 59 91 chr11 89453395 89453770 -32390086 - MTE2a LTR MaLR -7 372 10 8 1267 315 171 35 47 chr11 89454433 89454519 -32389337 + ORR1D2 LTR MaLR 231 315 -55 8 1267 185 226 0 31 chr11 89454525 89454589 -32389267 + GA-rich Low_complexity Low_complexity 2 63 0 8 1267 707 230 7 20 chr11 89454605 89454756 -32389100 + B1F2 SINE Alu 1 149 0 8 1267 186 299 103 13 chr11 89455057 89455135 -32388721 - MIRc SINE MIR -71 197 113 8 1267 501 47 0 0 chr11 89455170 89455234 -32388622 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1267 513 0 0 0 chr11 89456686 89456743 -32387113 + (TA)n Simple_repeat Simple_repeat 1 57 0 8 1267 706 252 42 14 chr11 89457142 89457355 -32386501 + ID_B1 SINE B4 2 220 -4 8 1267 599 303 92 60 chr11 89457416 89457785 -32386071 + L1MB3 LINE L1 5588 5968 -215 8 1267 371 289 141 25 chr11 89457825 89458024 -32385832 + L1MB3 LINE L1 5955 6176 -7 8 1267 411 350 6 25 chr11 89458625 89458786 -32385070 + RSINE1 SINE B4 3 160 -5 8 1267 28 0 0 0 chr11 89458800 89458828 -32385028 + AT_rich Low_complexity Low_complexity 1 28 0 8 1267 316 288 51 19 chr11 89458833 89458989 -32384867 - L2a LINE L2 -32 3394 3234 8 1267 282 345 150 9 chr11 89459080 89459442 -32384414 - L2a LINE L2 -284 3091 2686 8 1267 4141 50 2 0 chr11 89459883 89460385 -32383471 + L1Md_F2 LINE L1 5083 5585 -298 8 1267 8440 22 18 1 chr11 89460386 89461365 -32382491 + L1Md_F2 LINE L1 5587 6582 0 8 1267 783 286 30 103 chr11 89461366 89461453 -32382403 + MTE2a LTR MaLR 4 76 -303 8 1267 522 0 0 0 chr11 89461453 89461511 -32382345 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1267 783 286 30 103 chr11 89461511 89461821 -32382035 + MTE2a LTR MaLR 77 372 -7 8 1267 246 32 0 0 chr11 89461853 89461884 -32381972 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 8 1267 249 278 0 14 chr11 89461942 89462015 -32381841 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1267 371 275 23 0 chr11 89462303 89462434 -32381422 - MER121 Unknown Unknown -160 252 119 8 1267 235 264 21 32 chr11 89462837 89462931 -32380925 + MIRm SINE MIR 80 172 -96 8 1267 507 233 108 0 chr11 89463263 89463383 -32380473 + B1_Mur2 SINE Alu 4 136 -13 8 1267 354 205 0 0 chr11 89463956 89464034 -32379822 + CT-rich Low_complexity Low_complexity 4 81 0 8 1267 414 0 0 0 chr11 89464118 89464164 -32379692 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1267 216 192 19 0 chr11 89464164 89464216 -32379640 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1267 218 188 0 0 chr11 89464215 89464263 -32379593 + GA-rich Low_complexity Low_complexity 1 48 0 8 1267 333 207 171 0 chr11 89465372 89465454 -32378402 + B3 SINE B2 35 130 -86 8 1267 201 162 0 0 chr11 89465760 89465797 -32378059 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 8 1267 693 34 0 0 chr11 89466850 89466938 -32376918 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 8 1267 641 123 7 21 chr11 89466938 89467079 -32376777 + (CA)n Simple_repeat Simple_repeat 2 140 0 8 1267 467 292 25 65 chr11 89470703 89470904 -32372952 + MER121 Unknown Unknown 40 232 -180 8 1267 636 248 75 28 chr11 89471101 89471313 -32372543 + MER121 Unknown Unknown 128 349 -63 9 1267 240 35 0 0 chr11 89471477 89471506 -32372350 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1267 234 91 0 0 chr11 89471781 89471814 -32372042 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 9 1267 271 220 170 0 chr11 89472221 89472321 -32371535 + MIR SINE MIR 84 200 -62 9 1267 1123 63 0 14 chr11 89472667 89472811 -32371045 + B1_Mus2 SINE Alu 5 146 -1 9 1267 267 203 0 0 chr11 89473915 89473979 -32369877 + (CAT)n Simple_repeat Simple_repeat 2 65 0 9 1267 290 310 93 19 chr11 89473988 89474149 -32369707 - MIRb SINE MIR -19 249 77 9 1267 371 241 9 53 chr11 89474655 89474677 -32369179 - PB1D10 SINE Alu -2 115 7 9 1267 388 228 76 0 chr11 89474677 89474769 -32369087 - ID_B1 SINE B4 -38 186 88 9 1267 674 288 49 93 chr11 89476386 89476753 -32367103 - ORR1E LTR MaLR -8 351 1 9 1267 303 136 0 0 chr11 89478491 89478550 -32365306 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1267 905 286 43 11 chr11 89478557 89478836 -32365020 - B4 SINE B4 -4 288 1 9 1267 1044 24 0 0 chr11 89479202 89479325 -32364531 + (GAA)n Simple_repeat Simple_repeat 1 123 0 9 1267 25 0 0 0 chr11 89479687 89479712 -32364144 + AT_rich Low_complexity Low_complexity 1 25 0 9 1267 277 299 10 10 chr11 89480053 89480151 -32363705 + LTR16C LTR ERVL 379 476 -13 9 1267 217 227 0 0 chr11 89480801 89480845 -32363011 - B4A SINE B4 -169 123 80 9 1267 230 286 0 0 chr11 89480995 89481051 -32362805 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1267 414 0 0 0 chr11 89481052 89481098 -32362758 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 1267 423 0 0 0 chr11 89481098 89481144 -32362712 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 1267 812 256 65 20 chr11 89481900 89482147 -32361709 + MTD LTR MaLR 3 260 -159 9 1267 508 319 0 7 chr11 89483188 89483330 -32360526 - ID_B1 SINE B4 -1 223 83 9 1267 260 146 0 20 chr11 89484011 89484060 -32359796 + L5 LINE RTE 769 816 -1449 9 1267 567 0 0 0 chr11 89484663 89484726 -32359130 + (TC)n Simple_repeat Simple_repeat 1 63 0 9 1267 681 131 0 0 chr11 89484926 89485056 -32358800 + (CA)n Simple_repeat Simple_repeat 2 131 0 9 1267 1207 171 9 14 chr11 89485652 89485872 -32357984 - URR1B DNA MER1_type -6 219 1 9 1267 2147 149 39 36 chr11 89487425 89487620 -32356236 + RLTR11B LTR ERVK 1 196 -257 9 1267 327 25 0 0 chr11 89487620 89487660 -32356196 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1267 2147 149 39 36 chr11 89487660 89487903 -32355953 + RLTR11B LTR ERVK 197 440 -13 9 1267 1222 26 13 0 chr11 89488949 89489103 -32354753 + (GGA)n Simple_repeat Simple_repeat 1 156 0 9 1267 527 233 124 102 chr11 89490524 89490701 -32353155 - B3A SINE B2 -17 181 1 9 1267 297 275 56 16 chr11 89491005 89491100 -32352756 + B1F2 SINE Alu 2 99 -48 9 1267 254 276 11 75 chr11 89491194 89491217 -32352639 - RSINE1 SINE B4 0 165 149 9 1267 1895 140 26 66 chr11 89491217 89491233 -32352623 - RMER17C LTR ERVK 0 410 395 9 1267 402 21 0 0 chr11 89491233 89491280 -32352576 + (GGA)n Simple_repeat Simple_repeat 2 48 0 9 1267 1895 140 26 66 chr11 89491280 89491690 -32352166 - RMER17C LTR ERVK -16 394 2 9 1267 294 254 56 1 chr11 89491690 89491762 -32352094 - B4 SINE B4 0 292 218 9 1267 243 315 117 51 chr11 89491762 89491850 -32352006 + B4A SINE B4 133 233 -59 9 1267 3198 70 5 5 chr11 89491850 89492250 -32351606 + MTB LTR MaLR 1 400 0 9 1267 243 315 117 51 chr11 89492250 89492298 -32351558 + B4A SINE B4 234 278 -14 9 1267 315 277 31 21 chr11 89492405 89492501 -32351355 - PB1D10 SINE Alu -11 106 10 9 1267 638 287 148 3 chr11 89493402 89493706 -32350150 + MER63C DNA AcHobo 1 348 -582 9 1267 342 0 0 0 chr11 89493725 89493763 -32350093 + (TTA)n Simple_repeat Simple_repeat 3 40 0 9 1267 247 270 0 16 chr11 89493763 89493827 -32350029 - ID2 SINE ID -9 74 12 9 1267 889 333 44 34 chr11 89494380 89494881 -32348975 + MER63C DNA AcHobo 347 852 -78 9 1267 378 0 0 0 chr11 89494898 89494940 -32348916 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1267 1212 263 52 26 chr11 89495170 89495517 -32348339 + ORR1D2 LTR MaLR 10 365 -5 9 1267 218 273 18 0 chr11 89496258 89496313 -32347543 - L2c LINE L2 -51 3336 3281 9 1267 309 295 124 24 chr11 89496664 89496914 -32346942 + L3 LINE CR1 3990 4264 -225 9 1267 528 167 0 0 chr11 89497788 89497884 -32345972 + GA-rich Low_complexity Low_complexity 3 98 0 9 1267 696 12 0 0 chr11 89499015 89499096 -32344760 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 9 1267 656 248 9 76 chr11 89499145 89499355 -32344501 + B3A SINE B2 3 198 0 9 1267 361 294 173 49 chr11 89502046 89502289 -32341567 - B4A SINE B4 -19 273 1 1 1267 3933 74 22 9 chr11 89502411 89502973 -32340883 + L1_Mus3 LINE L1 6086 6638 0 2 1267 351 0 0 0 chr11 89504596 89504635 -32339221 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1267 278 243 0 0 chr11 89505070 89505129 -32338727 + ID4 SINE ID 8 66 -86 4 1267 269 288 15 0 chr11 89505076 89505142 -32338714 + tRNA-Ala-GCY_ tRNA tRNA 8 74 -1 5 1267 210 154 0 0 chr11 89506214 89506253 -32337603 + T-rich Low_complexity Low_complexity 5 43 0 6 1267 420 282 115 33 chr11 89506253 89506436 -32337420 - B3A SINE B2 0 198 1 7 1267 533 181 38 45 chr11 89508533 89508666 -32335190 + RMER17B LTR ERVK 1 132 -826 8 1267 856 243 47 47 chr11 89508664 89508962 -32334894 + RMER13B LTR ERVK 601 898 -10 9 1267 1986 78 11 3 chr11 89508962 89509244 -32334612 - L1_Mus3 LINE L1 -5 6633 6350 1 1267 442 298 105 58 chr11 89509395 89509844 -32334012 + L5 LINE RTE 759 1228 -1037 1 1267 396 237 10 10 chr11 89510011 89510109 -32333747 - MER45A DNA Tip100 0 178 81 1 1267 304 235 86 0 chr11 89510516 89510597 -32333259 - PB1D10 SINE Alu -29 88 1 1 1267 257 274 25 117 chr11 89511659 89511779 -32332077 + MER20 DNA MER1_type 3 111 -108 1 1267 351 225 20 92 chr11 89512072 89512170 -32331686 - MTEa LTR MaLR -282 97 7 1 1267 1121 175 118 7 chr11 89514371 89514514 -32329342 + Lx9 LINE L1 7324 7482 -162 1 1267 360 64 0 0 chr11 89514514 89514561 -32329295 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1267 1121 175 118 7 chr11 89514561 89514704 -32329152 + Lx9 LINE L1 7483 7642 -2 1 1267 244 360 21 42 chr11 89516062 89516204 -32327652 - MIRb SINE MIR -111 157 19 1 1267 458 265 53 24 chr11 89516622 89516792 -32327064 + MER53 DNA hAT 19 193 0 1 1267 345 262 87 0 chr11 89517354 89517457 -32326399 + B1F SINE Alu 37 148 -1 2 1267 585 0 0 0 chr11 89517661 89517726 -32326130 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1267 455 294 46 56 chr11 89519137 89519353 -32324503 + Charlie12 DNA MER1_type 7 220 -2653 2 1267 240 224 0 49 chr11 89519382 89519443 -32324413 + Charlie12 DNA MER1_type 2810 2867 -6 2 1267 2213 139 3 18 chr11 89519988 89520376 -32323480 - RMER4B LTR ERVK -203 382 1 2 1267 515 249 163 60 chr11 89520588 89520840 -32323016 + B4 SINE B4 1 278 -14 2 1267 261 279 0 0 chr11 89521217 89521285 -32322571 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1267 1041 244 23 85 chr11 89521285 89521590 -32322266 - B4 SINE B4 0 292 7 2 1267 366 272 40 14 chr11 89521668 89521783 -32322073 - L1MC1 LINE L1 -35 6309 6195 2 1267 846 254 71 18 chr11 89521770 89522051 -32321805 + L1MC1 LINE L1 5774 6069 -264 2 1268 895 294 52 26 chr11 89522196 89522542 -32321314 - L1MC1 LINE L1 -574 5759 5405 2 1268 368 218 44 33 chr11 89522578 89522735 -32321121 - B4A SINE B4 0 165 5 2 1268 348 315 26 33 chr11 89522759 89522910 -32320946 - L1MC1 LINE L1 -915 5418 5269 2 1268 627 211 108 23 chr11 89523064 89523276 -32320580 + MIRc SINE MIR 37 265 -3 2 1268 1096 149 119 0 chr11 89524411 89524612 -32319244 - URR1A DNA MER1_type -1 225 1 3 1268 312 171 0 0 chr11 89524619 89524701 -32319155 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1268 348 252 34 9 chr11 89525625 89525744 -32318112 + MIRb SINE MIR 59 183 -85 3 1268 213 178 0 0 chr11 89525744 89525789 -32318067 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1268 823 273 154 0 chr11 89525842 89526095 -32317761 + B4A SINE B4 1 292 0 3 1268 333 161 0 0 chr11 89526097 89526184 -32317672 + (CATATA)n Simple_repeat Simple_repeat 3 89 0 3 1268 269 356 99 0 chr11 89527509 89527610 -32316246 + PB1D10 SINE Alu 3 113 -4 3 1268 477 0 0 0 chr11 89527855 89527908 -32315948 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 3 1268 2106 268 60 68 chr11 89527969 89528052 -32315804 + Lx9 LINE L1 6818 6900 -744 3 1268 1909 198 9 82 chr11 89528052 89528477 -32315379 - ORR1B1 LTR MaLR 0 394 1 3 1268 2106 268 60 68 chr11 89528477 89529227 -32314629 + Lx9 LINE L1 6901 7644 0 3 1268 1189 62 14 0 chr11 89529240 89529385 -32314471 + B1_Mm SINE Alu 1 147 0 4 1268 2670 89 55 0 chr11 89529394 89529730 -32314126 - Lx3_Mus LINE L1 -617 6392 6051 4 1268 432 0 0 0 chr11 89529730 89529778 -32314078 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 4 1268 2670 89 55 0 chr11 89529778 89529823 -32314033 - Lx3_Mus LINE L1 -959 6050 5992 4 1268 4054 82 61 7 chr11 89529823 89530426 -32313430 + Lx3_Mus LINE L1 6374 7009 0 4 1268 425 293 6 87 chr11 89530775 89530849 -32313007 + RMER30 DNA MER1_type 17 88 -114 4 1268 351 0 0 0 chr11 89530849 89530888 -32312968 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 4 1268 425 293 6 87 chr11 89530888 89530985 -32312871 + RMER30 DNA MER1_type 89 174 -28 4 1268 272 164 0 15 chr11 89531857 89531925 -32311931 + A-rich Low_complexity Low_complexity 1 67 0 4 1268 1585 177 164 31 chr11 89532904 89533446 -32310410 + RLTR31_Mm LTR ERVK 1 583 0 4 1268 531 0 0 0 chr11 89533742 89533801 -32310055 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1268 214 267 0 0 chr11 89534124 89534169 -32309687 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1268 288 309 0 0 chr11 89534169 89534237 -32309619 + polypurine Low_complexity Low_complexity 4 71 0 5 1268 588 29 0 0 chr11 89534870 89534940 -32308916 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1268 261 364 44 44 chr11 89536306 89536622 -32307234 - L2a LINE L2 -9 3417 3102 5 1268 527 316 7 0 chr11 89537482 89537634 -32306222 + B4A SINE B4 33 185 -107 5 1268 405 58 0 0 chr11 89538004 89538056 -32305800 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1268 55 0 0 0 chr11 89539491 89539546 -32304310 + AT_rich Low_complexity Low_complexity 1 55 0 5 1268 204 40 0 0 chr11 89539546 89539571 -32304285 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1268 945 254 10 0 chr11 89539662 89539871 -32303985 - B3 SINE B2 -4 212 2 5 1268 190 310 194 6 chr11 89540945 89541120 -32302736 - L2 LINE L2 -708 2711 2504 5 1268 3825 247 42 32 chr11 89541350 89542846 -32301010 + Lx7 LINE L1 4902 6401 -1295 5 1268 189 0 0 0 chr11 89542858 89542879 -32300977 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1268 715 158 14 0 chr11 89542996 89543142 -32300714 + (TA)n Simple_repeat Simple_repeat 2 149 0 6 1268 405 0 0 0 chr11 89543304 89543349 -32300507 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1268 588 180 21 28 chr11 89543933 89544076 -32299780 - MTD LTR MaLR 0 419 278 6 1268 231 36 0 0 chr11 89547137 89547165 -32296691 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1268 324 48 0 0 chr11 89547708 89547750 -32296106 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1268 1051 65 13 0 chr11 89547751 89547904 -32295952 + (GA)n Simple_repeat Simple_repeat 2 156 0 6 1268 580 296 99 20 chr11 89548948 89549200 -32294656 - MER2 DNA MER2_type -53 292 21 6 1268 22 0 0 0 chr11 89549654 89549676 -32294180 + AT_rich Low_complexity Low_complexity 1 22 0 6 1268 690 238 14 0 chr11 89549761 89549908 -32293948 + B1F1 SINE Alu 1 149 0 6 1268 903 116 81 2 chr11 89549930 89550105 -32293751 + B2_Mm2 SINE B2 2 191 -2 7 1268 574 151 18 39 chr11 89550106 89550251 -32293605 + Lx2B LINE L1 6846 6997 0 7 1268 615 14 0 0 chr11 89551037 89551109 -32292747 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1268 829 314 86 6 chr11 89551113 89551440 -32292416 - Lx8 LINE L1 -151 7322 6970 7 1268 195 69 0 0 chr11 89551544 89551573 -32292283 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 7 1268 308 127 18 0 chr11 89553438 89553493 -32290363 + (TCC)n Simple_repeat Simple_repeat 3 58 0 7 1268 417 330 72 24 chr11 89554383 89554591 -32289265 - MER58A DNA MER1_type 0 224 7 7 1268 34 0 0 0 chr11 89554702 89554736 -32289120 + AT_rich Low_complexity Low_complexity 1 34 0 7 1268 792 281 33 25 chr11 89554845 89555119 -32288737 - B4A SINE B4 -8 284 9 7 1268 331 229 121 0 chr11 89556549 89556632 -32287224 + ID_B1 SINE B4 125 217 -7 7 1268 1055 129 6 0 chr11 89556632 89556810 -32287046 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 1268 354 280 16 41 chr11 89557108 89557231 -32286625 + GA-rich Low_complexity Low_complexity 3 122 0 8 1268 258 206 0 0 chr11 89557702 89557765 -32286091 + GA-rich Low_complexity Low_complexity 1 63 0 8 1268 592 104 32 13 chr11 89559795 89559925 -32283931 - B2_Mm2 SINE B2 -79 137 1 8 1268 226 273 0 94 chr11 89560151 89560236 -32283620 - ORR1E LTR MaLR -282 77 1 8 1268 281 360 18 41 chr11 89560803 89560974 -32282882 - MER102c DNA MER1_type -3 328 162 8 1268 700 28 47 0 chr11 89562187 89562294 -32281562 + (GA)n Simple_repeat Simple_repeat 2 113 0 8 1268 1620 0 0 0 chr11 89562298 89562478 -32281378 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 8 1268 521 122 11 22 chr11 89562943 89563035 -32280821 + URR1B DNA MER1_type 135 225 0 8 1268 1329 0 19 0 chr11 89563825 89563986 -32279870 + (TCTA)n Simple_repeat Simple_repeat 4 167 0 8 1268 552 296 94 70 chr11 89564347 89564721 -32279135 - MLT1C LTR MaLR -79 388 6 9 1268 428 309 36 0 chr11 89567079 89567218 -32276638 + RSINE1 SINE B4 3 146 -19 9 1268 210 191 0 0 chr11 89567314 89567356 -32276500 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 9 1268 22 56 0 0 chr11 89568627 89568663 -32275193 + AT_rich Low_complexity Low_complexity 1 36 0 9 1268 1336 250 26 42 chr11 89569851 89570231 -32273625 + MTEa LTR MaLR 1 374 -5 9 1268 601 291 120 46 chr11 89571806 89572065 -32271791 - B4 SINE B4 -6 286 9 9 1268 370 282 0 0 chr11 89572822 89572900 -32270956 - ID4_ SINE ID -4 79 2 9 1268 348 94 0 0 chr11 89573104 89573157 -32270699 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 9 1268 1235 66 4 0 chr11 89573158 89573401 -32270455 + (TTTC)n Simple_repeat Simple_repeat 1 243 0 9 1268 621 90 0 0 chr11 89573876 89573965 -32269891 + (CA)n Simple_repeat Simple_repeat 2 90 0 9 1268 453 179 118 28 chr11 89574484 89574628 -32269228 - Lx6 LINE L1 0 7460 7304 1 1268 549 333 115 63 chr11 89574698 89575220 -32268636 + MER21B LTR ERV1 19 567 -296 1 1268 597 287 97 4 chr11 89576170 89576418 -32267438 + L1MA4 LINE L1 5663 5933 -367 1 1268 561 337 27 11 chr11 89576550 89576811 -32267045 + MLT1A0 LTR MaLR 51 315 -50 1 1268 218 106 0 60 chr11 89577280 89577330 -32266526 + A-rich Low_complexity Low_complexity 4 50 0 1 1268 375 326 11 69 chr11 89577799 89577950 -32265906 + B4A SINE B4 33 170 -122 1 1268 285 29 0 0 chr11 89577950 89577984 -32265872 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 1268 375 326 11 69 chr11 89577984 89578092 -32265764 + B4A SINE B4 171 277 -15 1 1268 2875 47 9 0 chr11 89578456 89578799 -32265057 - ORR1A1 LTR MaLR 0 346 1 1 1268 709 226 238 9 chr11 89578813 89579036 -32264820 - B4 SINE B4 -17 275 2 1 1268 638 47 0 11 chr11 89583282 89583369 -32260487 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1268 363 259 105 29 chr11 89584636 89584781 -32259075 + MER5A1 DNA MER1_type 9 155 -11 1 1268 581 49 0 12 chr11 89584988 89585070 -32258786 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1268 393 295 157 0 chr11 89585614 89585780 -32258076 + MIR SINE MIR 69 260 -2 1 1268 680 260 79 15 chr11 89586235 89586438 -32257418 - B3 SINE B2 0 216 1 1 1268 563 309 41 48 chr11 89586666 89586958 -32256898 + B4 SINE B4 2 291 -1 1 1268 396 0 0 0 chr11 89586982 89587026 -32256830 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1268 741 23 0 0 chr11 89589944 89590031 -32253825 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1 1268 295 290 41 29 chr11 89590491 89590716 -32253140 - Lx8 LINE L1 0 7473 7214 1 1268 861 103 0 0 chr11 89591401 89591527 -32252329 + (CTA)n Simple_repeat Simple_repeat 1 126 0 1 1268 243 0 0 0 chr11 89591970 89591997 -32251859 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1268 1225 34 0 7 chr11 89591997 89592135 -32251721 - B1_Mm SINE Alu -9 138 1 1 1268 259 272 8 66 chr11 89592730 89592742 -32251114 + (CATATA)n Simple_repeat Simple_repeat 3 14 0 1 1268 648 38 0 0 chr11 89592742 89592821 -32251035 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1268 259 272 8 66 chr11 89592821 89592930 -32250926 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 1 1268 576 265 95 56 chr11 89593080 89593332 -32250524 - B4A SINE B4 0 292 31 1 1268 336 200 0 0 chr11 89595381 89595451 -32248405 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1268 902 264 45 110 chr11 89595451 89595679 -32248177 - B4 SINE B4 0 292 98 1 1268 1769 209 56 32 chr11 89595679 89596090 -32247766 + MTC LTR MaLR 1 421 0 1 1268 902 264 45 110 chr11 89596090 89596171 -32247685 - B4 SINE B4 -195 97 4 1 1268 326 308 123 25 chr11 89596683 89596886 -32246970 - RMER15 LTR ERVL 0 575 353 1 1268 1497 201 126 81 chr11 89597030 89597423 -32246433 + BGLII_B LTR ERVK 1 413 -28 1 1268 243 0 0 0 chr11 89597423 89597450 -32246406 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1268 1497 201 126 81 chr11 89597450 89597478 -32246378 + BGLII_B LTR ERVK 414 441 0 1 1268 249 364 32 7 chr11 89597948 89598103 -32245753 + MLT1I LTR MaLR 26 184 -227 1 1268 279 353 113 0 chr11 89598358 89598508 -32245348 + MLT1I LTR MaLR 245 411 0 1 1268 21 0 0 0 chr11 89600426 89600447 -32243409 + AT_rich Low_complexity Low_complexity 1 21 0 1 1268 295 296 56 56 chr11 89601122 89601283 -32242573 - MER20 DNA MER1_type -4 215 55 1 1268 345 222 57 66 chr11 89601838 89601944 -32241912 - B4A SINE B4 0 292 188 1 1268 367 275 32 90 chr11 89601942 89602098 -32241758 + B3 SINE B2 70 216 0 1 1268 192 254 55 82 chr11 89602474 89602547 -32241309 + MIR3 SINE MIR 85 155 -53 1 1268 342 0 0 0 chr11 89602729 89602767 -32241089 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1268 498 17 0 0 chr11 89602767 89602825 -32241031 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1268 327 152 0 0 chr11 89605323 89605402 -32238454 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 1 1268 417 129 0 0 chr11 89605402 89605472 -32238384 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1268 192 298 22 56 chr11 89605596 89605685 -32238171 - L2a LINE L2 -1 3425 3340 1 1268 23 0 0 0 chr11 89605690 89605713 -32238143 + AT_rich Low_complexity Low_complexity 1 23 0 1 1268 216 158 0 0 chr11 89605833 89605871 -32237985 + (ATG)n Simple_repeat Simple_repeat 1 38 0 1 1268 185 197 15 0 chr11 89605868 89605934 -32237922 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1268 279 0 0 0 chr11 89606159 89606190 -32237666 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1268 572 282 13 0 chr11 89606651 89606807 -32237049 + ID_B1 SINE B4 1 158 -66 1 1268 4287 62 0 0 chr11 89606807 89607355 -32236501 - L1_Mm LINE L1 -2933 2950 2403 1 1268 3212 24 3 0 chr11 89607355 89607713 -32236143 + L1_Mm LINE L1 5229 5586 -297 1 1268 8679 30 0 0 chr11 89607713 89608709 -32235147 + L1Md_T LINE L1 5587 6582 0 1 1268 3212 24 3 0 chr11 89608709 89608722 -32235134 + L1_Mm LINE L1 5587 5600 -283 1 1268 1493 43 21 0 chr11 89608724 89608910 -32234946 + B2_Mm2 SINE B2 3 192 -3 1 1268 311 279 0 0 chr11 89608935 89609014 -32234842 + ID_B1 SINE B4 146 224 0 1 1268 431 254 57 0 chr11 89609356 89609478 -32234378 - MLT1B LTR MaLR -249 141 13 1 1268 333 284 173 11 chr11 89610076 89610336 -32233520 + MLT1E1 LTR MaLR 1 302 -352 1 1268 791 329 18 7 chr11 89610614 89610899 -32232957 + B4A SINE B4 3 290 -2 1 1268 220 282 28 0 chr11 89610899 89610970 -32232886 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 1 1268 222 37 0 0 chr11 89611840 89611867 -32231989 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1268 203 254 0 45 chr11 89611870 89611936 -32231920 + (TATG)n Simple_repeat Simple_repeat 1 63 0 1 1268 617 312 79 15 chr11 89611950 89612217 -32231639 - B4A SINE B4 -8 284 1 1 1268 194 264 0 19 chr11 89612440 89612494 -32231362 - L2c LINE L2 -46 3341 3289 1 1268 1991 175 29 16 chr11 89613686 89614063 -32229793 + ORR1C2 LTR MaLR 3 384 0 1 1268 567 230 71 0 chr11 89614264 89614390 -32229466 + B3 SINE B2 1 135 -81 1 1268 609 27 0 0 chr11 89614417 89614492 -32229364 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1268 1622 47 0 0 chr11 89614521 89614713 -32229143 - B2_Mm1a SINE B2 -1 192 1 1 1268 339 273 68 0 chr11 89614755 89614843 -32229013 + 5S rRNA rRNA 2 95 -26 1 1268 240 288 30 15 chr11 89614783 89614850 -32229006 + AmnSINE1 SINE SINE 29 96 -479 1 1268 273 94 0 0 chr11 89615104 89615157 -32228699 + B3 SINE B2 163 215 -1 1 1268 427 257 24 12 chr11 89615639 89615761 -32228095 - B4A SINE B4 -163 129 5 1 1268 327 85 0 0 chr11 89616476 89616523 -32227333 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 1 1268 303 28 0 0 chr11 89617348 89617384 -32226472 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1268 398 253 339 66 chr11 89617398 89617610 -32226246 - B4A SINE B4 0 292 23 1 1268 452 344 66 55 chr11 89617919 89618267 -32225589 + ORR1E LTR MaLR 6 357 -2 1 1268 25 0 0 0 chr11 89618975 89619000 -32224856 + AT_rich Low_complexity Low_complexity 1 25 0 1 1268 409 286 27 45 chr11 89619472 89619582 -32224274 + PB1D10 SINE Alu 10 117 0 1 1268 3444 35 0 0 chr11 89619603 89619999 -32223857 + MTA_Mm LTR MaLR 1 396 0 1 1268 387 323 140 4 chr11 89620179 89620415 -32223441 + MLT1C LTR MaLR 200 467 0 1 1268 406 268 9 35 chr11 89620866 89620982 -32222874 + B4 SINE B4 157 269 -23 1 1268 477 0 0 0 chr11 89620983 89621036 -32222820 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1268 324 303 36 93 chr11 89621892 89622085 -32221771 + B3A SINE B2 1 182 -16 1 1268 655 299 61 0 chr11 89622396 89622593 -32221263 + B3 SINE B2 1 209 -7 1 1268 219 379 14 7 chr11 89623538 89623684 -32220172 + CT-rich Low_complexity Low_complexity 4 150 0 1 1268 606 297 65 0 chr11 89623684 89623869 -32219987 - ID_B1 SINE B4 -22 202 6 1 1268 570 308 46 86 chr11 89624193 89624566 -32219290 + ORR1E LTR MaLR 1 358 -1 1 1268 298 312 67 89 chr11 89624731 89624956 -32218900 + L1MEb LINE L1 417 636 -5434 1 1268 209 303 43 43 chr11 89624957 89625050 -32218806 + MIRb SINE MIR 139 231 -37 1 1268 22 35 0 0 chr11 89625866 89625895 -32217961 + AT_rich Low_complexity Low_complexity 1 29 0 1 1268 253 357 160 30 chr11 89626145 89626376 -32217480 - MIR SINE MIR -1 261 1 1 1268 273 55 35 35 chr11 89627529 89627586 -32216270 + (TTTTTG)n Simple_repeat Simple_repeat 1 57 0 1 1268 234 0 0 0 chr11 89627643 89627669 -32216187 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1268 434 314 32 0 chr11 89627706 89627862 -32215994 - MIRb SINE MIR -56 212 52 1 1268 756 256 99 79 chr11 89629051 89629509 -32214347 + L1MB5 LINE L1 5558 6026 -148 1 1268 753 269 4 56 chr11 89629518 89629750 -32214106 - MTE2a LTR MaLR -2 377 158 1 1268 1106 96 0 0 chr11 89629773 89629919 -32213937 + B1_Mus1 SINE Alu 1 146 -2 1 1268 225 94 0 0 chr11 89629920 89629952 -32213904 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1268 1549 277 85 44 chr11 89630507 89631122 -32212734 + Lx8 LINE L1 6569 7208 -265 1 1268 481 335 81 19 chr11 89631332 89631603 -32212253 - RMER15 LTR ERVL -14 561 274 1 1268 1027 188 92 0 chr11 89633589 89633796 -32210060 - URR1A DNA MER1_type 0 226 1 1 1268 452 318 115 8 chr11 89634041 89634276 -32209580 + L1MB3 LINE L1 5917 6176 -7 1 1268 526 280 0 20 chr11 89634344 89634497 -32209359 - MER33 DNA MER1_type -174 150 1 1 1268 497 267 16 38 chr11 89637818 89638001 -32205855 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1268 450 0 0 0 chr11 89638817 89638867 -32204989 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1268 223 365 29 0 chr11 89639528 89639632 -32204224 + MIRb SINE MIR 81 187 -81 2 1268 284 286 13 107 chr11 89640745 89640894 -32202962 + B3A SINE B2 6 140 -58 2 1268 1017 79 0 0 chr11 89640904 89641044 -32202812 + (CA)n Simple_repeat Simple_repeat 1 140 0 2 1268 480 18 0 0 chr11 89641044 89641100 -32202756 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1268 191 320 68 29 chr11 89641145 89641248 -32202608 + L2a LINE L2 3222 3328 -98 2 1268 294 286 26 13 chr11 89641272 89641350 -32202506 - ID4_ SINE ID -3 80 2 2 1268 254 29 0 28 chr11 89642408 89642444 -32201412 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 2 1268 739 204 6 13 chr11 89643286 89643445 -32200411 - B3 SINE B2 -54 162 5 2 1268 228 231 0 0 chr11 89643839 89643917 -32199939 + CT-rich Low_complexity Low_complexity 2 79 0 2 1268 523 322 30 20 chr11 89645024 89645227 -32198629 - B4 SINE B4 -86 206 2 2 1268 297 75 0 0 chr11 89646424 89646464 -32197392 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1268 1235 229 25 22 chr11 89646670 89647025 -32196831 + MTD LTR MaLR 12 415 -4 2 1268 4523 218 0 56 chr11 89647382 89647489 -32196367 + Lx7 LINE L1 5799 5899 -1159 2 1268 438 53 0 0 chr11 89647489 89647546 -32196310 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1268 4523 260 103 36 chr11 89647546 89648958 -32194898 + Lx7 LINE L1 5897 7414 -282 2 1268 25 90 0 0 chr11 89649058 89649125 -32194731 + AT_rich Low_complexity Low_complexity 1 67 0 2 1268 431 268 54 23 chr11 89649139 89649269 -32194587 + B1F SINE Alu 1 134 -15 2 1268 315 0 0 0 chr11 89649272 89649307 -32194549 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 2 1268 752 279 139 3 chr11 89650269 89650586 -32193270 - Lx8 LINE L1 -141 7332 6973 2 1268 490 300 7 72 chr11 89650945 89651152 -32192704 + MLT1E2 LTR MaLR 2 198 -307 2 1268 273 373 60 0 chr11 89651217 89651351 -32192505 + MLT1E2 LTR MaLR 317 458 -169 2 1268 1205 109 29 0 chr11 89651678 89651852 -32192004 + B2_Mm1t SINE B2 1 179 -14 2 1268 349 127 0 0 chr11 89651899 89651954 -32191902 + B2_Mm2 SINE B2 47 101 -94 2 1268 444 317 40 40 chr11 89651997 89652145 -32191711 + B3A SINE B2 28 175 -23 2 1268 261 0 0 0 chr11 89652146 89652175 -32191681 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1268 24 32 0 0 chr11 89652239 89652270 -32191586 + AT_rich Low_complexity Low_complexity 1 31 0 2 1268 1521 52 0 30 chr11 89652576 89652775 -32191081 + B2_Mm1a SINE B2 1 193 0 2 1269 278 82 41 0 chr11 89653527 89653576 -32190280 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 2 1269 252 0 0 0 chr11 89653607 89653635 -32190221 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1269 808 306 31 28 chr11 89653640 89653926 -32189930 - B4A SINE B4 -4 288 2 2 1269 282 299 13 0 chr11 89655409 89655486 -32188370 - PB1D10 SINE Alu -37 80 3 2 1269 8961 130 44 8 chr11 89655840 89657303 -32186553 + Lx4B LINE L1 5545 7058 0 2 1269 211 72 23 23 chr11 89657372 89657415 -32186441 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1269 226 342 90 37 chr11 89658354 89658569 -32185287 - MIR SINE MIR -18 244 15 2 1269 570 247 49 60 chr11 89659381 89659630 -32184226 - L1MC2 LINE L1 -1661 6124 5879 2 1269 420 184 0 0 chr11 89659919 89660017 -32183839 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 2 1269 450 94 0 0 chr11 89660121 89660185 -32183671 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2 1269 500 271 13 26 chr11 89661448 89661603 -32182253 + MTEa LTR MaLR 225 377 -2 2 1269 888 310 28 31 chr11 89661994 89662317 -32181539 - MLT2B2 LTR ERVL -190 325 4 2 1269 829 288 62 32 chr11 89662318 89662659 -32181197 - MLT1A0 LTR MaLR -14 351 1 2 1269 254 333 51 8 chr11 89662783 89662901 -32180955 + MLT1I LTR MaLR 66 188 -223 2 1269 529 287 53 12 chr11 89662918 89663087 -32180769 + MER58A DNA MER1_type 6 181 -43 2 1269 1092 106 6 11 chr11 89664624 89664805 -32179051 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1269 284 167 14 0 chr11 89664808 89664880 -32178976 + GA-rich Low_complexity Low_complexity 2 74 0 2 1269 1716 229 35 15 chr11 89665024 89665427 -32178429 + MTD LTR MaLR 1 411 -8 2 1269 393 266 18 151 chr11 89665430 89665596 -32178260 - B4A SINE B4 -114 178 29 2 1269 546 16 0 0 chr11 89666627 89666690 -32177166 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1269 318 115 0 0 chr11 89666691 89666752 -32177104 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1269 765 85 0 0 chr11 89666827 89666933 -32176923 + (GA)n Simple_repeat Simple_repeat 2 107 0 2 1269 865 57 16 8 chr11 89667194 89667318 -32176538 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 2 1269 385 329 92 29 chr11 89667749 89668065 -32175791 + L1MEg LINE L1 897 1232 -4852 2 1269 342 80 0 0 chr11 89668373 89668423 -32175433 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1269 567 0 0 0 chr11 89668423 89668485 -32175371 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1269 286 281 97 46 chr11 89668938 89669113 -32174743 + L1ME2 LINE L1 5707 5890 -274 2 1269 504 0 0 0 chr11 89669695 89669751 -32174105 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1269 251 278 214 18 chr11 89669821 89670041 -32173815 + L1M5 LINE L1 5614 5876 -364 2 1269 452 212 29 0 chr11 89670086 89670223 -32173633 + (TA)n Simple_repeat Simple_repeat 2 142 0 2 1269 189 0 0 0 chr11 89670223 89670244 -32173612 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1269 795 73 41 24 chr11 89670906 89671075 -32172781 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 2 1269 618 99 0 0 chr11 89671082 89671173 -32172683 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1269 470 358 34 17 chr11 89671174 89671410 -32172446 - Lx8 LINE L1 -187 7286 7047 2 1269 702 0 0 0 chr11 89672042 89672120 -32171736 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 2 1269 226 291 0 0 chr11 89672135 89672190 -32171666 - B4 SINE B4 -173 119 65 2 1269 365 238 0 19 chr11 89672195 89672302 -32171554 + (TATATG)n Simple_repeat Simple_repeat 3 107 0 2 1269 853 156 8 0 chr11 89672307 89672435 -32171421 - B1_Mus1 SINE Alu -15 133 5 2 1269 606 232 205 0 chr11 89672437 89672627 -32171229 - B4 SINE B4 -60 232 4 2 1269 395 320 52 0 chr11 89672763 89672916 -32170940 - MER5A DNA MER1_type -2 187 27 2 1269 2361 163 68 11 chr11 89673176 89673617 -32170239 + RMER4A LTR ERVK 1 466 0 2 1269 204 314 0 0 chr11 89674758 89674809 -32169047 + (TATG)n Simple_repeat Simple_repeat 1 51 0 2 1269 593 271 173 9 chr11 89674818 89675049 -32168807 - B4A SINE B4 -19 273 5 2 1269 470 339 126 8 chr11 89675820 89676067 -32167789 - MER68 LTR ERVL -283 280 5 2 1269 432 0 0 0 chr11 89676098 89676146 -32167710 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1269 415 263 41 33 chr11 89676194 89676316 -32167540 + B4A SINE B4 154 276 -16 2 1269 216 277 0 46 chr11 89676326 89676413 -32167443 + (CATATA)n Simple_repeat Simple_repeat 1 83 0 2 1269 269 256 26 0 chr11 89676449 89676542 -32167314 + L1MD LINE L1 2938 3035 -3111 2 1269 246 312 61 30 chr11 89676590 89676755 -32167101 + Arthur1B DNA Tip100 855 1024 -201 2 1269 250 347 28 61 chr11 89677343 89677524 -32166332 - MamRep605 Unknown Unknown -336 540 366 2 1269 887 244 53 5 chr11 89679482 89679688 -32164168 + B3 SINE B2 1 216 0 2 1269 428 248 122 76 chr11 89681339 89681470 -32162386 + ORR1E LTR MaLR 1 148 -211 2 1269 873 301 19 4 chr11 89681628 89681888 -32161968 + ORR1D2 LTR MaLR 97 360 -10 2 1269 188 167 0 94 chr11 89682922 89682975 -32160881 + MIRm SINE MIR 213 260 -16 2 1269 275 329 58 125 chr11 89683381 89683676 -32160180 + B4A SINE B4 2 276 -16 2 1269 528 16 0 0 chr11 89683679 89683740 -32160116 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1269 204 40 0 0 chr11 89683751 89683776 -32160080 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1269 7404 60 0 0 chr11 89684120 89685032 -32158824 + L1Md_T LINE L1 5671 6582 0 2 1269 259 264 43 32 chr11 89686422 89686516 -32157340 + L1MA9 LINE L1 5179 5273 -870 2 1269 239 220 0 20 chr11 89686518 89686569 -32157287 + (TGG)n Simple_repeat Simple_repeat 2 51 0 2 1269 1140 283 110 28 chr11 89686622 89687052 -32156804 + L1MA9 LINE L1 5450 5903 -409 2 1269 891 161 226 6 chr11 89687052 89687233 -32156623 - URR1B DNA MER1_type -4 221 1 2 1269 1140 283 110 28 chr11 89687233 89687376 -32156480 + L1MA9 LINE L1 5904 6070 -242 2 1269 428 268 56 19 chr11 89687408 89687568 -32156288 - L1M2 LINE L1 -568 5744 5579 2 1269 521 15 0 15 chr11 89690053 89690120 -32153736 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 2 1269 1042 249 137 19 chr11 89690332 89690696 -32153160 + MTD LTR MaLR 13 419 0 2 1269 3287 50 5 5 chr11 89690830 89691229 -32152627 + MTB LTR MaLR 2 400 0 2 1269 531 292 47 67 chr11 89691336 89691589 -32152267 - ORR1E LTR MaLR -109 250 3 2 1269 575 308 102 15 chr11 89691589 89691829 -32152027 - ORR1E-int LTR MaLR -51 1529 1267 2 1269 826 29 0 0 chr11 89691832 89691937 -32151919 + B1_Mm SINE Alu 34 138 -9 2 1269 270 0 0 0 chr11 89691937 89691967 -32151889 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1269 1329 213 104 12 chr11 89692094 89692422 -32151434 + ORR1D1 LTR MaLR 1 358 -16 2 1269 1149 61 0 13 chr11 89692723 89692873 -32150983 + B1_Mus1 SINE Alu 1 148 0 2 1269 987 302 34 52 chr11 89693369 89693753 -32150103 + MTE-int LTR MaLR 174 550 -1030 2 1269 352 242 63 0 chr11 89694218 89694313 -32149543 + MLT1A1 LTR MaLR 301 401 -7 2 1269 1142 172 18 26 chr11 89694716 89694943 -32148913 - URR1A DNA MER1_type -1 225 1 2 1269 997 74 0 0 chr11 89696085 89696220 -32147636 + B1_Mus2 SINE Alu 8 142 -5 2 1269 407 261 27 9 chr11 89696228 89696340 -32147516 - B1F2 SINE Alu -12 137 24 2 1269 744 294 5 19 chr11 89696385 89696600 -32147256 - B3 SINE B2 -4 212 1 3 1269 213 167 0 0 chr11 89696653 89696707 -32147149 + CT-rich Low_complexity Low_complexity 1 54 0 3 1269 396 0 0 0 chr11 89696707 89696751 -32147105 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1269 802 307 35 12 chr11 89696764 89697018 -32146838 - B4 SINE B4 -18 274 15 3 1269 211 339 100 0 chr11 89699750 89699880 -32143976 + MIRb SINE MIR 61 203 -65 3 1269 315 252 89 42 chr11 89700276 89700401 -32143455 + MER58B DNA MER1_type 199 327 -14 3 1269 22 35 0 0 chr11 89700539 89700568 -32143288 + AT_rich Low_complexity Low_complexity 1 29 0 3 1269 965 108 7 0 chr11 89700576 89700715 -32143141 + B1_Mus1 SINE Alu 1 140 -8 3 1269 213 39 0 0 chr11 89700715 89700741 -32143115 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 3 1269 483 18 0 0 chr11 89701885 89701941 -32141915 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1269 366 61 0 0 chr11 89702148 89702197 -32141659 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1269 846 316 29 43 chr11 89703278 89703652 -32140204 + MER74A LTR ERVL 22 390 -168 3 1269 805 174 282 28 chr11 89703655 89703868 -32139988 - MTC LTR MaLR -1 420 154 3 1269 318 312 21 31 chr11 89704168 89704264 -32139592 + PB1D10 SINE Alu 9 103 -14 3 1269 597 28 0 0 chr11 89704309 89704380 -32139476 + (TTG)n Simple_repeat Simple_repeat 1 71 0 3 1269 206 333 0 12 chr11 89704432 89704517 -32139339 + A-rich Low_complexity Low_complexity 5 88 0 3 1269 290 205 0 13 chr11 89705849 89705894 -32137962 + G-rich Low_complexity Low_complexity 2 46 0 3 1269 951 80 0 0 chr11 89705894 89706032 -32137824 + (AGATG)n Simple_repeat Simple_repeat 4 141 0 3 1269 290 205 0 13 chr11 89706032 89706065 -32137791 + G-rich Low_complexity Low_complexity 47 79 0 3 1269 1458 0 0 0 chr11 89706065 89706227 -32137629 + (GGGAA)n Simple_repeat Simple_repeat 1 162 0 3 1269 1251 209 58 18 chr11 89706333 89706611 -32137245 + B4A SINE B4 3 291 -1 3 1269 453 182 13 7 chr11 89706614 89706763 -32137093 + (CA)n Simple_repeat Simple_repeat 1 150 0 3 1269 1098 23 0 0 chr11 89707639 89707768 -32136088 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 3 1269 1400 126 9 5 chr11 89707779 89708002 -32135854 - Lx2B LINE L1 -6 6994 6771 3 1269 304 61 0 0 chr11 89708080 89708129 -32135727 - L1_Mus1 LINE L1 0 6567 6519 3 1269 317 358 33 20 chr11 89708140 89708385 -32135471 - L1MC LINE L1 -608 5736 5489 3 1269 367 280 212 0 chr11 89708402 89708534 -32135322 + RSINE1 SINE B4 4 163 -2 3 1269 1138 54 0 33 chr11 89709395 89709547 -32134309 + B1_Mus1 SINE Alu 2 148 0 3 1269 290 320 144 27 chr11 89710212 89710546 -32133310 - L2a LINE L2 -7 3419 3047 3 1269 26 0 0 0 chr11 89710781 89710807 -32133049 + AT_rich Low_complexity Low_complexity 1 26 0 3 1269 991 164 50 27 chr11 89710878 89711293 -32132563 - RLTR28 LTR ERVL -11 513 36 3 1269 437 296 58 53 chr11 89711301 89711526 -32132330 - B4A SINE B4 -56 236 11 3 1269 220 27 26 26 chr11 89711599 89711637 -32132219 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1269 281 135 19 0 chr11 89712235 89712287 -32131569 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1269 4153 57 0 2 chr11 89712508 89713014 -32130842 - L1_Mus2 LINE L1 -1 6565 6061 3 1269 591 27 0 0 chr11 89713307 89713382 -32130474 - L1Md_T LINE L1 0 6582 6508 3 1269 190 349 36 12 chr11 89714312 89714396 -32129460 + L4 LINE RTE 1409 1494 -535 3 1269 495 0 0 0 chr11 89714448 89714503 -32129353 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1269 288 303 90 14 chr11 89714993 89715137 -32128719 - B3A SINE B2 0 216 62 3 1269 1363 64 35 0 chr11 89715380 89715553 -32128303 + B2_Mm1t SINE B2 1 179 -14 3 1269 477 50 0 0 chr11 89715634 89715694 -32128162 + (TAG)n Simple_repeat Simple_repeat 3 62 0 3 1269 749 288 39 34 chr11 89715719 89715953 -32127903 - B4 SINE B4 -15 277 43 3 1269 364 302 0 16 chr11 89717112 89717233 -32126623 + MIR SINE MIR 35 153 -109 3 1269 501 251 98 16 chr11 89717302 89717496 -32126360 + B3 SINE B2 1 210 -6 3 1269 195 100 0 0 chr11 89718356 89718386 -32125470 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1269 243 341 32 0 chr11 89718393 89718519 -32125337 + (TATATG)n Simple_repeat Simple_repeat 2 131 0 3 1269 831 228 85 40 chr11 89718548 89718749 -32125107 - B4 SINE B4 -82 210 1 3 1269 785 135 43 6 chr11 89719060 89719224 -32124632 + C-rich Low_complexity Low_complexity 2 171 0 3 1269 436 300 16 8 chr11 89719239 89719360 -32124496 - B3A SINE B2 -50 148 27 3 1269 1001 217 35 0 chr11 89720293 89720496 -32123360 + B3 SINE B2 2 211 -5 3 1269 269 320 0 74 chr11 89720641 89720749 -32123107 - MIRm SINE MIR -134 142 43 3 1269 940 291 51 48 chr11 89721905 89722259 -32121597 + ORR1E LTR MaLR 5 359 0 3 1269 699 261 11 49 chr11 89722305 89722490 -32121366 + MTEa LTR MaLR 1 178 -201 3 1269 819 145 21 24 chr11 89722494 89722832 -32121024 + GA-rich Low_complexity Low_complexity 1 336 0 3 1269 351 232 368 7 chr11 89722846 89722958 -32120898 + B3 SINE B2 1 161 -55 3 1269 342 0 0 0 chr11 89722958 89722996 -32120860 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1269 351 232 368 7 chr11 89722996 89723035 -32120821 + B3 SINE B2 162 207 -9 3 1269 560 252 92 13 chr11 89723072 89723225 -32120631 + MTEa LTR MaLR 205 369 -10 3 1269 270 316 61 9 chr11 89724396 89724511 -32119345 - LTR16A1 LTR ERVL -1 455 335 3 1269 1265 262 102 30 chr11 89724882 89725354 -32118502 - L1MB1 LINE L1 -204 5985 5480 3 1269 445 174 20 27 chr11 89725355 89725503 -32118353 + CT-rich Low_complexity Low_complexity 2 148 0 3 1269 237 109 43 21 chr11 89726523 89726570 -32117286 + MT2A LTR ERVL 1 48 -485 3 1269 1434 229 70 0 chr11 89726583 89726911 -32116945 + MT2A LTR ERVL 183 533 0 3 1269 2312 146 62 13 chr11 89726920 89727310 -32116546 - RLTR9E LTR ERVK 0 409 1 3 1269 479 211 11 0 chr11 89727797 89727887 -32115969 + ID_B1 SINE B4 126 216 -8 3 1269 355 204 73 31 chr11 89727801 89727897 -32115959 + B1F SINE Alu 49 148 -1 3 1269 226 340 105 0 chr11 89727942 89728151 -32115705 + L1MA9 LINE L1 6010 6240 -72 3 1269 331 56 37 0 chr11 89728429 89728483 -32115373 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1269 558 0 0 0 chr11 89728871 89728933 -32114923 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1269 912 19 0 0 chr11 89729640 89729746 -32114110 + (TC)n Simple_repeat Simple_repeat 1 106 0 3 1269 243 0 0 0 chr11 89729746 89729772 -32114084 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1269 595 269 36 57 chr11 89729780 89730065 -32113791 - L1MA4 LINE L1 -365 5935 5616 3 1269 21 36 0 0 chr11 89730231 89730259 -32113597 + AT_rich Low_complexity Low_complexity 1 28 0 3 1269 1607 60 0 15 chr11 89730312 89730514 -32113342 + L1Md_F3 LINE L1 6372 6570 -14 3 1269 745 301 132 14 chr11 89730748 89731119 -32112737 - L1MC3 LINE L1 -197 7588 7174 3 1269 333 0 0 0 chr11 89731212 89731249 -32112607 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1269 321 118 0 0 chr11 89731309 89731360 -32112496 + (TATG)n Simple_repeat Simple_repeat 4 54 0 3 1269 915 281 46 32 chr11 89731367 89731650 -32112206 - B4A SINE B4 0 292 6 3 1269 198 0 0 0 chr11 89732291 89732313 -32111543 + (CAGG)n Simple_repeat Simple_repeat 1 22 0 3 1269 244 216 80 0 chr11 89732628 89732716 -32111140 + Lx9 LINE L1 7423 7517 -127 3 1269 186 209 0 0 chr11 89732716 89732759 -32111097 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 3 1269 352 323 11 48 chr11 89732760 89732953 -32110903 - MIR SINE MIR -60 208 20 3 1269 453 250 17 8 chr11 89733601 89733718 -32110138 - MER20 DNA MER1_type 0 219 102 3 1269 387 56 0 0 chr11 89734120 89734174 -32109682 + (TCTG)n Simple_repeat Simple_repeat 4 57 0 3 1269 495 0 0 0 chr11 89734253 89734308 -32109548 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1269 219 69 0 0 chr11 89734511 89734540 -32109316 + (CAT)n Simple_repeat Simple_repeat 2 30 0 3 1269 508 265 28 8 chr11 89734874 89735035 -32108821 - MIRb SINE MIR -67 209 37 3 1269 874 271 47 13 chr11 89736841 89737073 -32106783 + MER2 DNA MER2_type 105 344 -1 3 1269 369 311 19 9 chr11 89738054 89738161 -32105695 + PB1D10 SINE Alu 1 108 -9 3 1269 267 231 132 0 chr11 89738243 89738334 -32105522 - MIR SINE MIR -63 199 97 3 1269 851 255 93 75 chr11 89738398 89738678 -32105178 - B4A SINE B4 -5 287 3 3 1269 597 28 0 0 chr11 89738992 89739063 -32104793 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1269 306 372 48 12 chr11 89739597 89739763 -32104093 + MLT2B3 LTR ERVL 3 174 -380 3 1269 471 284 60 137 chr11 89739660 89740022 -32103834 + MTEb LTR MaLR 57 367 -7 3 1269 491 265 68 141 chr11 89740349 89740569 -32103287 + MER20 DNA MER1_type 3 206 -13 3 1269 216 0 0 0 chr11 89741535 89741559 -32102297 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 3 1269 946 59 0 29 chr11 89741559 89741699 -32102157 + (TTTCC)n Simple_repeat Simple_repeat 4 139 0 3 1269 405 0 0 0 chr11 89741699 89741744 -32102112 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 3 1269 605 86 11 0 chr11 89741744 89741837 -32102019 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 1269 1151 96 7 0 chr11 89741850 89741996 -32101860 - B1_Mus1 SINE Alu 0 148 2 3 1269 274 358 57 35 chr11 89742438 89742667 -32101189 + BLACKJACK DNA AcHobo 36 269 -2675 3 1269 261 0 0 0 chr11 89742685 89742714 -32101142 + (TCC)n Simple_repeat Simple_repeat 3 31 0 3 1269 7566 57 8 1 chr11 89742714 89743652 -32100204 + L1_Mus3 LINE L1 5682 6626 -12 3 1269 230 318 126 9 chr11 89743846 89743957 -32099899 + BLACKJACK DNA AcHobo 838 961 -1983 3 1269 419 273 54 9 chr11 89743958 89744069 -32099787 + B1F1 SINE Alu 21 136 -13 4 1269 316 250 22 87 chr11 89744282 89744374 -32099482 + ID SINE ID 2 87 -137 4 1269 344 316 98 23 chr11 89744478 89744692 -32099164 + BLACKJACK DNA AcHobo 1109 1338 -1606 3 1269 352 324 64 7 chr11 89744697 89744837 -32099019 + B1F2 SINE Alu 1 148 -1 4 1269 795 309 94 0 chr11 89744841 89745097 -32098759 + B4A SINE B4 1 280 -12 4 1269 1427 296 29 17 chr11 89745218 89745695 -32098161 + Lx9 LINE L1 6972 7454 -190 4 1269 1058 257 45 34 chr11 89745694 89745812 -32098044 - Lx9 LINE L1 -29 7615 7496 4 1269 1038 207 87 136 chr11 89745812 89746225 -32097631 + RLTR9C LTR ERVK 1 393 0 4 1269 3091 218 96 14 chr11 89746225 89747098 -32096758 - Lx9 LINE L1 -149 7495 6551 4 1269 357 247 11 0 chr11 89747097 89747190 -32096666 + Lx9 LINE L1 7538 7631 -13 4 1269 988 301 77 81 chr11 89747211 89748093 -32095763 + BLACKJACK DNA AcHobo 1410 2288 -656 3 1269 691 310 67 32 chr11 89748136 89748389 -32095467 + RCHARR1 DNA MER1_type 73 334 -640 4 1269 703 178 0 13 chr11 89748411 89748474 -32095382 + polypyrimidine Low_complexity Low_complexity 92 154 0 4 1269 1368 67 0 0 chr11 89748474 89748654 -32095202 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1269 703 178 0 13 chr11 89748654 89748744 -32095112 + polypyrimidine Low_complexity Low_complexity 4 91 0 4 1269 474 288 171 26 chr11 89748776 89749040 -32094816 + RCHARR1 DNA MER1_type 673 974 0 4 1269 289 297 69 0 chr11 89749048 89749193 -32094663 + BLACKJACK DNA AcHobo 2286 2440 -504 3 1269 977 257 74 46 chr11 89749195 89749586 -32094270 - L1MA9 LINE L1 0 6312 5911 4 1269 530 303 124 19 chr11 89749981 89750351 -32093505 - L1MDa LINE L1 -1656 4881 4473 4 1269 373 306 90 23 chr11 89750353 89750697 -32093159 + L1M5 LINE L1 4920 5286 -860 4 1269 750 106 0 0 chr11 89750768 89750891 -32092965 + (GA)n Simple_repeat Simple_repeat 2 124 0 4 1269 261 0 0 0 chr11 89751036 89751065 -32092791 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1269 281 349 39 16 chr11 89751177 89751305 -32092551 - ORR1E LTR MaLR 0 379 249 4 1269 444 310 39 0 chr11 89751471 89751600 -32092256 - ORR1E LTR MaLR -218 141 8 4 1269 772 337 73 3 chr11 89751753 89752042 -32091814 + Lx9 LINE L1 6486 6794 -850 4 1269 567 0 0 0 chr11 89752190 89752253 -32091603 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1269 189 171 0 0 chr11 89752289 89752324 -32091532 + CT-rich Low_complexity Low_complexity 1 35 0 4 1269 188 61 61 0 chr11 89752330 89752363 -32091493 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 4 1269 234 286 35 35 chr11 89752463 89752637 -32091219 - L1MDa LINE L1 -3991 2642 2469 4 1269 855 288 53 40 chr11 89753119 89753419 -32090437 - MLT1A0 LTR MaLR 0 365 62 4 1269 267 271 29 0 chr11 89753434 89753504 -32090352 - ID4_ SINE ID -1 82 11 4 1269 259 311 123 43 chr11 89753535 89753673 -32090183 - ID_B1 SINE B4 -2 222 74 4 1269 240 191 21 0 chr11 89753684 89753731 -32090125 - MLT1A0 LTR MaLR -358 50 3 4 1269 840 92 0 0 chr11 89754348 89754467 -32089389 + (TCC)n Simple_repeat Simple_repeat 2 120 0 4 1269 841 182 36 0 chr11 89754467 89754604 -32089252 - B1_Mur2 SINE Alu -7 142 1 4 1269 396 0 0 0 chr11 89754653 89754697 -32089159 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1269 461 367 0 0 chr11 89755431 89755570 -32088286 + RSINE1 SINE B4 14 152 -13 4 1269 418 114 0 22 chr11 89755578 89755668 -32088188 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1269 461 17 17 0 chr11 89755675 89755733 -32088123 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1269 827 266 86 4 chr11 89755969 89756214 -32087642 + Lx6 LINE L1 7182 7446 -14 4 1269 366 146 0 0 chr11 89756222 89756304 -32087552 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 1269 438 20 0 0 chr11 89756310 89756361 -32087495 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1269 682 277 18 29 chr11 89756361 89756525 -32087331 - B3A SINE B2 -33 165 2 4 1269 306 293 57 0 chr11 89756784 89756907 -32086949 - L1MC LINE L1 -2050 5832 5703 4 1269 334 343 107 10 chr11 89756920 89757126 -32086730 - L1M5 LINE L1 -1039 5107 4882 4 1269 247 282 28 0 chr11 89757279 89757350 -32086506 + L1MC4a LINE L1 7176 7248 -634 4 1269 457 304 14 21 chr11 89757351 89757492 -32086364 + B4A SINE B4 1 140 -152 4 1269 230 191 21 0 chr11 89757742 89757789 -32086067 + L1MC4a LINE L1 7418 7465 -530 4 1269 285 292 58 8 chr11 89757808 89757929 -32085927 + L1MC4a LINE L1 7444 7570 -312 4 1269 268 218 125 94 chr11 89758087 89758183 -32085673 - MLT1C LTR MaLR -368 99 1 4 1269 683 202 240 34 chr11 89758929 89758966 -32084890 - B3 SINE B2 0 216 166 4 1269 369 0 0 0 chr11 89758966 89759007 -32084849 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1269 683 202 240 34 chr11 89759007 89759148 -32084708 - B3 SINE B2 -51 165 1 4 1269 362 366 31 38 chr11 89759512 89759671 -32084185 - MIRb SINE MIR -98 170 13 4 1269 248 185 61 15 chr11 89759734 89759800 -32084056 + GA-rich Low_complexity Low_complexity 6 74 0 4 1269 710 339 5 0 chr11 89760703 89760892 -32082964 - ID_B1 SINE B4 -27 197 8 4 1269 1165 207 0 0 chr11 89760971 89761179 -32082677 + URR1A DNA MER1_type 13 220 -6 4 1269 489 306 64 18 chr11 89761203 89761423 -32082433 + MER58B DNA MER1_type 23 252 -89 4 1269 3252 70 5 2 chr11 89761442 89761841 -32082015 + MTB LTR MaLR 1 400 0 4 1269 224 286 206 0 chr11 89763486 89763549 -32080307 - ID4_ SINE ID -6 77 2 4 1269 396 289 35 21 chr11 89763555 89763700 -32080156 - B1F1 SINE Alu 0 149 3 4 1269 22 0 0 0 chr11 89763746 89763768 -32080088 + AT_rich Low_complexity Low_complexity 1 22 0 4 1269 483 18 0 0 chr11 89763920 89763976 -32079880 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1269 612 0 0 0 chr11 89763976 89764043 -32079813 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1269 767 189 129 5 chr11 89765181 89765383 -32078473 - Lx9 LINE L1 -2 7642 7416 4 1269 39157 42 0 3 chr11 89765384 89771851 -32072005 - L1Md_T LINE L1 0 6585 41 4 1269 2047 186 14 0 chr11 89771853 89772213 -32071643 - Lx9 LINE L1 -218 7426 7062 4 1269 347 320 87 83 chr11 89772686 89773309 -32070547 - L1MEf LINE L1 -4588 1612 988 4 1269 404 118 15 0 chr11 89773709 89773777 -32070079 + (GGGGA)n Simple_repeat Simple_repeat 2 70 0 4 1269 423 0 0 0 chr11 89773876 89773923 -32069933 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1269 1116 113 0 0 chr11 89774014 89774164 -32069692 + B1_Mur4 SINE Alu 1 150 0 4 1269 194 336 93 28 chr11 89774280 89774387 -32069469 + L2b LINE L2 3253 3366 -9 4 1269 189 0 0 0 chr11 89774432 89774453 -32069403 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1269 711 35 0 0 chr11 89774537 89774623 -32069233 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1269 483 319 78 87 chr11 89775189 89775546 -32068310 + ORR1E LTR MaLR 1 354 -5 4 1269 767 305 74 71 chr11 89776171 89776873 -32066983 - L1MD LINE L1 -1219 4927 4224 4 1269 1580 315 82 51 chr11 89776930 89777325 -32066531 - Lx9 LINE L1 -1737 5907 5435 4 1269 219 69 0 0 chr11 89777325 89777354 -32066502 + (CTG)n Simple_repeat Simple_repeat 1 29 0 4 1269 1715 305 117 76 chr11 89777354 89778266 -32065590 - L1_Mur3 LINE L1 -431 5449 4570 4 1269 576 0 0 0 chr11 89778266 89778330 -32065526 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1269 303 342 19 58 chr11 89778333 89778488 -32065368 - RSINE1 SINE B4 -14 151 3 4 1269 1715 305 117 76 chr11 89778488 89778654 -32065202 - L1_Mur3 LINE L1 -1311 4569 4360 4 1269 1661 74 17 4 chr11 89778654 89778885 -32064971 - L1_Mus2 LINE L1 -1 6565 6332 4 1269 1715 305 117 76 chr11 89778885 89779158 -32064698 - L1_Mur3 LINE L1 -1521 4359 4071 4 1269 256 217 313 0 chr11 89779161 89779244 -32064612 + L1_Mur3 LINE L1 3760 3868 -2009 4 1269 250 233 17 0 chr11 89779316 89779376 -32064480 + L1_Mur3 LINE L1 3993 4053 -1824 4 1269 244 284 12 0 chr11 89779370 89779451 -32064405 - L1MD LINE L1 -2201 3945 3864 4 1269 1117 323 91 5 chr11 89780188 89780627 -32063229 + MLT2B4 LTR ERVL 6 482 -74 4 1269 513 0 0 0 chr11 89782394 89782451 -32061405 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1270 486 0 0 0 chr11 89784729 89784783 -32059073 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1270 2200 147 8 10 chr11 89784846 89785231 -32058625 + RLTR28B LTR ERVL 96 479 -2 4 1270 4307 110 6 23 chr11 89785425 89786086 -32057770 - L1_Mur2 LINE L1 -762 5115 4466 4 1270 5239 85 32 3 chr11 89786085 89786807 -32057049 + Lx4A LINE L1 5878 6620 -438 4 1270 4317 89 22 2 chr11 89786801 89787385 -32056471 - L1_Mus2 LINE L1 -101 5782 5187 4 1270 6019 61 8 1 chr11 89787385 89788145 -32055711 + L1_Mus2 LINE L1 5801 6565 -1 4 1270 2401 143 37 62 chr11 89788171 89788625 -32055231 + Lx4A LINE L1 6612 7054 -4 4 1270 1040 95 0 12 chr11 89788775 89788935 -32054921 + (TTCC)n Simple_repeat Simple_repeat 1 158 0 4 1270 306 0 0 0 chr11 89789122 89789156 -32054700 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1270 184 122 49 0 chr11 89790002 89790043 -32053813 + (CAT)n Simple_repeat Simple_repeat 3 45 0 4 1270 405 0 0 0 chr11 89790063 89790108 -32053748 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1270 419 264 105 30 chr11 89790108 89790241 -32053615 - RSINE1 SINE B4 -20 145 3 4 1270 919 215 285 3 chr11 89791140 89791452 -32052404 - MTD LTR MaLR -18 401 2 4 1270 828 95 7 14 chr11 89791515 89791654 -32052202 - L1Md_F2 LINE L1 -3 6579 6442 4 1270 4181 42 4 6 chr11 89791654 89792154 -32051702 + L1Md_F2 LINE L1 5903 6401 -181 4 1270 264 59 0 0 chr11 89794797 89794831 -32049025 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1270 232 289 32 43 chr11 89794984 89795078 -32048778 + MER5B DNA MER1_type 31 123 -55 4 1270 540 45 0 0 chr11 89795459 89795526 -32048330 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1270 567 43 0 0 chr11 89797539 89797609 -32046247 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 1270 252 0 0 0 chr11 89797609 89797636 -32046220 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1270 216 0 0 0 chr11 89797636 89797659 -32046197 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1270 22 0 0 0 chr11 89797666 89797688 -32046168 + AT_rich Low_complexity Low_complexity 1 22 0 4 1270 725 12 0 0 chr11 89797696 89797777 -32046079 - L1_Mus3 LINE L1 -683 5955 5875 4 1270 2687 68 8 6 chr11 89797780 89798136 -32045720 + L1_Mus3 LINE L1 6276 6632 -6 4 1270 493 312 31 69 chr11 89798264 89798553 -32045303 - B4A SINE B4 -14 278 1 4 1270 519 291 91 0 chr11 89800149 89800324 -32043532 - B4A SINE B4 -53 239 49 4 1270 267 169 27 27 chr11 89800324 89800397 -32043459 + T-rich Low_complexity Low_complexity 6 78 0 4 1270 1211 55 7 0 chr11 89800397 89800543 -32043313 - B1_Mm SINE Alu 0 147 1 4 1270 701 199 43 14 chr11 89801832 89801970 -32041886 - B1_Mur2 SINE Alu -7 142 1 4 1270 1055 253 185 60 chr11 89802198 89802651 -32041205 - L1MB7 LINE L1 0 6184 5721 4 1270 201 74 0 0 chr11 89802651 89802678 -32041178 + (CAA)n Simple_repeat Simple_repeat 3 29 0 4 1270 1055 253 185 60 chr11 89802678 89803052 -32040804 - L1MB7 LINE L1 -464 5720 5255 4 1270 635 281 63 87 chr11 89803055 89803421 -32040435 + MLT1A0 LTR MaLR 1 357 -8 4 1270 890 294 116 17 chr11 89803438 89803812 -32040044 - L1MB7 LINE L1 -944 5202 4787 4 1270 180 0 0 0 chr11 89803812 89803832 -32040024 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 1270 890 294 116 17 chr11 89803832 89803921 -32039935 - L1MB7 LINE L1 -1360 4786 4694 4 1270 287 249 71 0 chr11 89803949 89804050 -32039806 - L1MB7 LINE L1 -1926 4214 4106 4 1270 393 316 53 6 chr11 89804110 89804279 -32039577 - L1MB7 LINE L1 -2028 4118 3942 4 1270 423 0 0 0 chr11 89804295 89804342 -32039514 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1270 307 269 10 31 chr11 89807089 89807185 -32036671 + L1MB8 LINE L1 5916 6009 -169 5 1270 190 330 98 0 chr11 89808720 89808832 -32035024 + MIR SINE MIR 124 246 -16 5 1270 222 363 126 0 chr11 89808983 89809118 -32034738 + MIRb SINE MIR 95 246 -22 5 1270 198 393 36 0 chr11 89809646 89809786 -32034070 + MIRb SINE MIR 106 250 -18 5 1270 869 299 104 8 chr11 89809835 89810189 -32033667 - MTD LTR MaLR -14 405 18 5 1270 247 235 0 0 chr11 89810542 89810593 -32033263 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1270 2226 163 32 10 chr11 89810601 89811003 -32032853 - MTC LTR MaLR 0 421 11 5 1270 183 129 0 0 chr11 89811008 89811039 -32032817 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1270 771 42 0 0 chr11 89811039 89811133 -32032723 + (GA)n Simple_repeat Simple_repeat 2 96 0 5 1270 214 236 83 0 chr11 89811492 89811564 -32032292 + PB1D7 SINE Alu 36 113 -7 5 1270 482 141 0 42 chr11 89812717 89812813 -32031043 + L1_Mus4 LINE L1 6542 6633 -3 5 1270 8956 23 0 0 chr11 89813438 89815135 -32028721 - L1Md_T LINE L1 0 6582 4886 5 1270 5858 28 0 0 chr11 89815131 89815812 -32028044 + L1Md_T LINE L1 4195 4875 -1008 5 1270 366 282 102 115 chr11 89815904 89816148 -32027708 + B4A SINE B4 1 241 -51 5 1270 457 146 9 19 chr11 89816236 89816341 -32027515 + (CATA)n Simple_repeat Simple_repeat 3 106 0 5 1270 839 160 6 0 chr11 89816759 89816915 -32026941 + (TA)n Simple_repeat Simple_repeat 1 157 0 5 1270 552 299 47 65 chr11 89817355 89817570 -32026286 - B4 SINE B4 0 292 82 5 1270 340 54 68 43 chr11 89817570 89817687 -32026169 + T-rich Low_complexity Low_complexity 2 121 0 5 1270 1183 68 0 0 chr11 89817691 89817837 -32026019 - B1_Mus1 SINE Alu -1 147 2 5 1270 311 264 32 21 chr11 89817837 89817930 -32025926 - B4 SINE B4 -196 96 3 5 1270 220 264 106 75 chr11 89817950 89818028 -32025828 - MIR SINE MIR -101 161 76 5 1270 2981 136 118 9 chr11 89818028 89818555 -32025301 + RMER4B LTR ERVK 2 585 0 5 1270 220 264 106 75 chr11 89818555 89818570 -32025286 - MIR SINE MIR -187 75 65 5 1270 749 234 149 0 chr11 89818839 89819027 -32024829 + B3 SINE B2 1 216 0 5 1270 269 297 90 45 chr11 89819542 89819697 -32024159 - L1MB5 LINE L1 -33 6141 5980 5 1270 488 122 0 12 chr11 89820518 89820601 -32023255 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 5 1270 230 201 17 69 chr11 89820650 89820717 -32023139 - ID4 SINE ID -73 79 16 5 1270 482 265 0 25 chr11 89820766 89820886 -32022970 - PB1D10 SINE Alu 0 117 1 5 1270 303 310 84 50 chr11 89820887 89821267 -32022589 - L1MEg LINE L1 -4950 1134 742 5 1270 4601 79 25 0 chr11 89821531 89822139 -32021717 + L1Md_F2 LINE L1 4376 4998 -885 5 1270 36317 43 0 3 chr11 89822138 89827360 -32016496 + L1Md_T LINE L1 287 5589 -297 5 1270 8599 34 0 0 chr11 89827360 89828356 -32015500 + L1Md_T LINE L1 5590 6585 0 5 1270 4927 53 0 0 chr11 89828368 89828970 -32014886 + L1Md_F2 LINE L1 4985 5586 -297 5 1270 8147 50 1 4 chr11 89828970 89829969 -32013887 + L1Md_F2 LINE L1 5587 6582 0 5 1270 555 43 0 0 chr11 89832563 89832633 -32011223 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1270 513 316 25 12 chr11 89834843 89835003 -32008853 + ID_B1 SINE B4 51 212 -12 5 1270 205 284 18 73 chr11 89835640 89835750 -32008106 - MIRb SINE MIR -102 166 63 5 1270 296 267 94 9 chr11 89835936 89836042 -32007814 - L1ME2z LINE L1 -8 6436 6322 5 1270 48 53 0 0 chr11 89836719 89836795 -32007061 + AT_rich Low_complexity Low_complexity 1 76 0 5 1270 308 167 0 14 chr11 89836840 89836913 -32006943 + CT-rich Low_complexity Low_complexity 1 72 0 5 1270 727 168 0 8 chr11 89836913 89837033 -32006823 - PB1D9 SINE Alu -1 119 1 5 1270 223 299 0 15 chr11 89837682 89837750 -32006106 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1270 406 304 121 31 chr11 89837939 89838264 -32005592 - MLT1F2 LTR MaLR -200 369 42 5 1270 578 197 0 4 chr11 89838354 89838612 -32005244 + (TG)n Simple_repeat Simple_repeat 1 256 0 5 1270 839 232 27 43 chr11 89838612 89838633 -32005223 - B3A SINE B2 -16 182 163 5 1270 510 17 0 0 chr11 89838633 89838692 -32005164 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1270 839 232 27 43 chr11 89838692 89838855 -32005001 - B3A SINE B2 -36 162 1 5 1270 345 24 0 0 chr11 89838981 89839023 -32004833 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1270 279 0 0 0 chr11 89839023 89839053 -32004803 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1270 534 243 200 22 chr11 89839185 89839370 -32004486 - ID_B1 SINE B4 -2 222 5 5 1270 989 275 68 28 chr11 89841283 89841605 -32002251 + ORR1E LTR MaLR 25 359 0 5 1270 339 47 384 0 chr11 89842076 89842183 -32001673 - B2_Mm2 SINE B2 -1 194 47 5 1270 1382 75 11 0 chr11 89842197 89842371 -32001485 - B2_Mm1t SINE B2 -16 177 2 5 1270 1032 194 59 5 chr11 89843613 89843815 -32000041 + B3 SINE B2 2 214 -2 5 1270 243 204 0 0 chr11 89844112 89844166 -31999690 + CT-rich Low_complexity Low_complexity 4 57 0 5 1270 753 249 5 45 chr11 89844357 89844559 -31999297 - B3 SINE B2 -20 196 3 5 1270 213 39 0 0 chr11 89844567 89844593 -31999263 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 5 1270 180 111 0 0 chr11 89844613 89844640 -31999216 + (TTTC)n Simple_repeat Simple_repeat 4 30 0 5 1270 1080 76 0 0 chr11 89845019 89845151 -31998705 + B1_Mus1 SINE Alu 2 133 -15 5 1270 475 321 83 0 chr11 89846328 89846496 -31997360 + B3A SINE B2 1 182 -16 5 1270 21 0 0 0 chr11 89846503 89846524 -31997332 + AT_rich Low_complexity Low_complexity 1 21 0 5 1270 877 195 78 29 chr11 89848087 89848293 -31995563 + B3 SINE B2 1 216 0 5 1270 438 296 57 23 chr11 89851543 89851719 -31992137 + MLT1K LTR MaLR 248 429 -166 5 1270 307 329 21 0 chr11 89852945 89853088 -31990768 - L2 LINE L2 -459 2960 2815 5 1270 274 252 144 25 chr11 89853190 89853308 -31990548 + Lx6 LINE L1 7286 7417 -43 5 1270 267 157 0 0 chr11 89853308 89853359 -31990497 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 5 1270 213 121 0 0 chr11 89854286 89854319 -31989537 + (GGGAGA)n Simple_repeat Simple_repeat 2 34 0 5 1270 213 0 81 0 chr11 89856413 89856450 -31987406 + (TTG)n Simple_repeat Simple_repeat 3 42 0 5 1270 242 231 92 0 chr11 89856564 89856629 -31987227 + B4A SINE B4 27 97 -195 5 1270 760 273 10 30 chr11 89856631 89856831 -31987025 + B3A SINE B2 3 198 0 5 1270 507 259 75 19 chr11 89856984 89857145 -31986711 + MER92B LTR ERV1 176 345 -291 5 1270 1153 228 36 105 chr11 89857568 89857960 -31985896 - ORR1D1 LTR MaLR -8 366 2 5 1270 215 333 25 0 chr11 89858704 89858785 -31985071 - MIRc SINE MIR -92 176 94 5 1270 207 0 0 0 chr11 89859656 89859679 -31984177 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1270 285 264 11 75 chr11 89861072 89861166 -31982690 + B1F1 SINE Alu 7 94 -55 5 1270 21 36 0 0 chr11 89861195 89861223 -31982633 + AT_rich Low_complexity Low_complexity 1 28 0 5 1270 30 0 0 0 chr11 89864618 89864648 -31979208 + AT_rich Low_complexity Low_complexity 1 30 0 5 1270 351 0 0 0 chr11 89865580 89865619 -31978237 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1270 351 0 0 0 chr11 89865619 89865657 -31978199 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1270 183 42 0 0 chr11 89865876 89865900 -31977956 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1270 293 209 60 0 chr11 89866025 89866092 -31977764 - PB1D9 SINE Alu -19 101 31 5 1270 24 0 0 0 chr11 89866177 89866201 -31977655 + AT_rich Low_complexity Low_complexity 1 24 0 5 1270 262 319 0 0 chr11 89867047 89867116 -31976740 + ID2 SINE ID 1 69 -14 5 1270 329 317 30 0 chr11 89867734 89867929 -31975927 + L1M5 LINE L1 5275 5480 -2515 5 1270 570 287 0 58 chr11 89867935 89868109 -31975747 + RSINE1 SINE B4 1 164 -1 5 1270 531 0 0 0 chr11 89868109 89868168 -31975688 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1270 351 113 0 0 chr11 89868248 89868301 -31975555 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1270 757 144 0 27 chr11 89868346 89868531 -31975325 + CT-rich Low_complexity Low_complexity 1 180 0 5 1270 344 297 70 6 chr11 89868532 89868688 -31975168 + L1M5 LINE L1 5539 5704 -460 5 1270 4141 66 3 1 chr11 89868696 89869411 -31974445 + RLTR22_Mus LTR ERVK 1 800 -1008 5 1270 340 249 10 35 chr11 89869902 89870024 -31973832 + L1M5 LINE L1 5728 5841 -503 5 1270 656 256 132 20 chr11 89870192 89870443 -31973413 + L1MC4 LINE L1 6750 7028 -1014 5 1270 674 248 105 14 chr11 89870466 89870673 -31973183 + B4 SINE B4 1 226 -66 5 1270 309 329 96 51 chr11 89870673 89870830 -31973026 + RSINE1 SINE B4 2 165 0 5 1270 280 323 0 0 chr11 89870860 89870925 -31972931 + B4 SINE B4 223 287 -5 5 1270 274 287 99 34 chr11 89871090 89871382 -31972474 + L1MC4 LINE L1 7140 7450 -592 5 1270 181 241 69 0 chr11 89871658 89871716 -31972140 + L2a LINE L2 3103 3164 -262 5 1270 300 226 12 23 chr11 89872116 89872202 -31971654 - MTE2a LTR MaLR 0 379 295 5 1270 243 242 0 0 chr11 89872684 89872746 -31971110 + CT-rich Low_complexity Low_complexity 2 63 0 5 1270 297 341 30 8 chr11 89872792 89872925 -31970931 + RSINE1 SINE B4 1 136 -29 5 1270 23 0 0 0 chr11 89872935 89872958 -31970898 + AT_rich Low_complexity Low_complexity 1 23 0 5 1270 231 146 0 0 chr11 89873488 89873529 -31970327 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 5 1270 292 0 45 23 chr11 89874275 89874319 -31969537 + (GTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1270 711 288 5 29 chr11 89874702 89874906 -31968950 - B3 SINE B2 0 216 18 5 1270 233 379 59 73 chr11 89874996 89875352 -31968504 + ORR1E LTR MaLR 7 357 -2 5 1270 859 266 35 41 chr11 89875483 89875773 -31968083 + B4 SINE B4 5 292 0 5 1270 1007 237 65 106 chr11 89877357 89877744 -31966112 - MTE2a LTR MaLR -8 371 1 5 1270 216 0 0 0 chr11 89878328 89878352 -31965504 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 1270 261 0 0 0 chr11 89878352 89878380 -31965476 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1270 410 297 104 71 chr11 89878433 89878730 -31965126 - Lx8 LINE L1 -198 7275 6969 6 1270 405 348 19 0 chr11 89879056 89879211 -31964645 - RSINE1 SINE B4 -6 159 2 6 1270 238 303 15 0 chr11 89879433 89879499 -31964357 + MLT1G1 LTR MaLR 47 113 -482 6 1270 333 278 92 10 chr11 89879531 89879629 -31964227 + PB1D10 SINE Alu 2 107 -10 6 1270 370 318 88 40 chr11 89879680 89879906 -31963950 + MLT1G1 LTR MaLR 147 383 -196 6 1270 863 285 75 27 chr11 89879931 89880223 -31963633 - MT2A LTR ERVL 0 533 228 6 1270 202 283 0 0 chr11 89880223 89880276 -31963580 + (CAG)n Simple_repeat Simple_repeat 3 55 0 6 1270 714 264 14 34 chr11 89880281 89880489 -31963367 - MT2A LTR ERVL -295 238 35 6 1270 186 43 0 0 chr11 89880557 89880580 -31963276 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1270 350 312 14 21 chr11 89881014 89881155 -31962701 + B1_Mur2 SINE Alu 9 148 -1 6 1270 702 113 0 0 chr11 89881278 89881384 -31962472 + (TA)n Simple_repeat Simple_repeat 2 107 0 6 1270 21 71 0 0 chr11 89881935 89881977 -31961879 + AT_rich Low_complexity Low_complexity 1 42 0 6 1270 362 250 85 95 chr11 89881995 89882132 -31961724 + B3A SINE B2 14 157 -41 6 1270 567 43 0 0 chr11 89882132 89882202 -31961654 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1270 217 228 86 121 chr11 89882202 89882234 -31961622 + B2_Mm1a SINE B2 157 189 -4 6 1270 270 0 0 0 chr11 89882569 89882599 -31961257 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 6 1270 195 42 0 0 chr11 89882914 89882938 -31960918 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1270 658 287 110 8 chr11 89882990 89883166 -31960690 - B4A SINE B4 -8 284 85 6 1270 279 0 0 0 chr11 89883166 89883197 -31960659 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1270 658 287 110 8 chr11 89883197 89883266 -31960590 - B4A SINE B4 -208 84 15 6 1270 925 47 0 57 chr11 89883286 89883328 -31960528 + (GGAAA)n Simple_repeat Simple_repeat 3 38 0 6 1270 1356 56 0 0 chr11 89883328 89883506 -31960350 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 6 1270 925 47 0 57 chr11 89883506 89883620 -31960236 + (GGAAA)n Simple_repeat Simple_repeat 4 115 0 6 1270 1047 192 5 51 chr11 89884809 89885023 -31958833 - B3 SINE B2 -12 204 1 6 1270 389 330 42 33 chr11 89885246 89885459 -31958397 + MER20 DNA MER1_type 5 219 0 6 1270 5779 174 21 21 chr11 89885725 89886839 -31957017 + Lx4B LINE L1 5937 7051 -7 6 1270 635 0 13 0 chr11 89887002 89887077 -31956779 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1270 547 121 6 0 chr11 89891381 89891475 -31952381 - B1_Mus1 SINE Alu -23 97 1 6 1270 264 250 0 0 chr11 89891568 89891624 -31952232 + C-rich Low_complexity Low_complexity 3 58 0 6 1270 317 290 0 0 chr11 89893848 89893917 -31949939 + ID4 SINE ID 2 70 -13 6 1270 210 37 0 0 chr11 89894288 89894315 -31949541 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1270 348 24 0 0 chr11 89894489 89894530 -31949326 + (GGA)n Simple_repeat Simple_repeat 2 42 0 6 1270 224 200 60 0 chr11 89894707 89894757 -31949099 + GA-rich Low_complexity Low_complexity 4 56 0 6 1270 180 0 0 0 chr11 89894785 89894805 -31949051 + (GGGGA)n Simple_repeat Simple_repeat 4 23 0 6 1270 288 0 0 0 chr11 89895650 89895682 -31948174 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1270 715 243 33 56 chr11 89897854 89898068 -31945788 - B3A SINE B2 -6 210 2 6 1270 22 0 0 0 chr11 89898214 89898236 -31945620 + AT_rich Low_complexity Low_complexity 1 22 0 6 1270 473 205 0 0 chr11 89899930 89900013 -31943843 - PB1D7 SINE Alu -16 104 22 6 1270 373 145 0 26 chr11 89900058 89900136 -31943720 + GA-rich Low_complexity Low_complexity 1 76 0 6 1270 311 121 17 0 chr11 89900372 89900430 -31943426 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1270 215 81 0 51 chr11 89900689 89900728 -31943128 + (TGGGGG)n Simple_repeat Simple_repeat 3 39 0 6 1270 1965 124 63 8 chr11 89901136 89901502 -31942354 + ORR1B1 LTR MaLR 1 386 -8 6 1270 590 284 147 32 chr11 89901546 89901859 -31941997 - MLT1A0 LTR MaLR -15 350 2 6 1270 1748 174 60 25 chr11 89901922 89902287 -31941569 - ORR1C1 LTR MaLR 0 378 1 6 1270 24 0 0 0 chr11 89902314 89902338 -31941518 + AT_rich Low_complexity Low_complexity 1 24 0 6 1270 705 310 106 53 chr11 89902399 89902740 -31941116 + ORR1E LTR MaLR 1 359 0 6 1270 758 256 39 5 chr11 89902891 89903095 -31940761 - B3 SINE B2 -5 211 1 6 1270 257 348 53 24 chr11 89903129 89903338 -31940518 - L1ME3A LINE L1 -249 5924 5710 6 1270 599 285 74 99 chr11 89903344 89903628 -31940228 + MLT1F LTR MaLR 3 279 -269 6 1270 381 276 17 8 chr11 89903646 89903763 -31940093 - MTD LTR MaLR -14 405 288 6 1270 1129 69 14 0 chr11 89903767 89903912 -31939944 + B1_Mus1 SINE Alu 2 148 0 6 1270 311 122 30 20 chr11 89903912 89904012 -31939844 + (CAAA)n Simple_repeat Simple_repeat 1 101 0 6 1270 392 310 90 53 chr11 89904039 89904284 -31939572 - MTD LTR MaLR -165 254 1 6 1270 273 361 27 34 chr11 89904284 89904419 -31939437 + MLT1F LTR MaLR 299 432 -116 6 1270 267 289 0 0 chr11 89904419 89904495 -31939361 - ORSL DNA Tip100 -1 274 199 6 1270 279 323 39 32 chr11 89904683 89904850 -31939006 - L1ME3A LINE L1 -459 5714 5536 6 1270 665 274 69 86 chr11 89905215 89905506 -31938350 + B4 SINE B4 1 286 -6 6 1270 2045 159 82 3 chr11 89905530 89905895 -31937961 + ORR1B1 LTR MaLR 1 394 0 6 1270 281 264 0 40 chr11 89906429 89906504 -31937352 + B4A SINE B4 219 290 -2 6 1270 234 0 0 0 chr11 89907476 89907502 -31936354 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 6 1270 371 305 108 14 chr11 89910212 89910425 -31933431 + B4A SINE B4 46 290 -2 6 1270 327 157 0 0 chr11 89910444 89910514 -31933342 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1270 351 0 0 0 chr11 89910720 89910759 -31933097 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1270 258 255 199 9 chr11 89910841 89910958 -31932898 + MIR SINE MIR 18 159 -109 6 1270 1366 225 110 21 chr11 89912010 89912382 -31931474 + MTD LTR MaLR 1 405 -14 6 1270 189 0 0 0 chr11 89912548 89912569 -31931287 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1270 913 71 24 12 chr11 89912577 89912747 -31931109 + (GTTTG)n Simple_repeat Simple_repeat 2 173 0 6 1270 694 68 0 10 chr11 89912747 89912851 -31931005 - B1_Mus2 SINE Alu -9 138 36 6 1270 258 171 114 38 chr11 89912787 89912866 -31930990 - RLTR25B LTR ERVK -530 498 414 6 1270 708 260 11 11 chr11 89913277 89913452 -31930404 + B3A SINE B2 2 176 -22 6 1270 307 110 55 0 chr11 89913793 89913866 -31929990 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 6 1271 204 150 0 0 chr11 89915535 89915542 -31928314 + (GGAA)n Simple_repeat Simple_repeat 1 7 0 6 1271 855 78 0 0 chr11 89915542 89915671 -31928185 + (GA)n Simple_repeat Simple_repeat 1 129 0 6 1271 204 150 0 0 chr11 89915671 89915703 -31928153 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 6 1271 362 283 43 21 chr11 89917160 89917301 -31926555 - MER3 DNA MER1_type -8 201 58 6 1271 201 175 0 0 chr11 89918293 89918333 -31925523 + GA-rich Low_complexity Low_complexity 3 42 0 6 1271 387 0 0 0 chr11 89918428 89918471 -31925385 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1271 337 250 0 16 chr11 89919228 89919354 -31924502 + CT-rich Low_complexity Low_complexity 3 126 0 6 1271 1420 169 240 32 chr11 89919426 89919805 -31924051 + RMER6B LTR ERVK 4 461 0 6 1271 531 258 8 17 chr11 89920847 89921014 -31922842 + B3A SINE B2 59 216 0 6 1271 206 355 67 29 chr11 89921436 89921645 -31922211 - L2 LINE L2 -453 2966 2750 6 1271 209 329 90 27 chr11 89921733 89921955 -31921901 - L2 LINE L2 -866 2553 2318 6 1271 778 118 12 0 chr11 89921956 89922117 -31921739 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 6 1271 719 78 10 0 chr11 89922154 89922257 -31921599 + (CATA)n Simple_repeat Simple_repeat 4 107 0 6 1271 915 97 19 0 chr11 89922259 89922413 -31921443 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 6 1271 2952 155 42 9 chr11 89922725 89923266 -31920590 - RLTR31_Mm LTR ERVK -1 560 2 6 1271 288 228 132 58 chr11 89924663 89924784 -31919072 + MIRc SINE MIR 24 153 -115 6 1271 2053 173 22 51 chr11 89924802 89925216 -31918640 - MTC LTR MaLR 0 421 20 6 1271 23 33 0 0 chr11 89925747 89925777 -31918079 + AT_rich Low_complexity Low_complexity 1 30 0 6 1271 450 275 111 23 chr11 89926535 89926706 -31917150 - B3 SINE B2 -2 214 29 6 1271 673 164 294 29 chr11 89926924 89927094 -31916762 - B3 SINE B2 -1 215 1 6 1271 198 0 0 0 chr11 89927167 89927189 -31916667 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 6 1271 243 0 0 0 chr11 89927762 89927789 -31916067 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1271 520 285 28 0 chr11 89929030 89929174 -31914682 + B1F SINE Alu 2 149 0 6 1271 801 310 50 24 chr11 89929321 89929699 -31914157 + MLT2D LTR ERVL 1 414 0 6 1271 229 369 140 13 chr11 89930707 89930943 -31912913 - Lx8 LINE L1 -147 7326 7061 6 1271 1966 321 40 32 chr11 89930973 89931780 -31912076 - Lx8 LINE L1 -464 7009 6197 6 1271 246 143 0 0 chr11 89931781 89931830 -31912026 + (CCA)n Simple_repeat Simple_repeat 1 49 0 6 1271 283 195 218 48 chr11 89932345 89932469 -31911387 + Lx7 LINE L1 7552 7696 0 6 1271 246 128 128 0 chr11 89932776 89932823 -31911033 + RSINE1 SINE B4 85 137 -28 6 1271 675 65 0 0 chr11 89933433 89933526 -31910330 + (CAG)n Simple_repeat Simple_repeat 1 93 0 6 1271 361 178 24 60 chr11 89933833 89934000 -31909856 + (TTATA)n Simple_repeat Simple_repeat 3 163 0 6 1271 882 221 10 43 chr11 89934009 89934217 -31909639 - B3 SINE B2 -11 205 5 6 1271 22 0 0 0 chr11 89934231 89934253 -31909603 + AT_rich Low_complexity Low_complexity 1 22 0 6 1271 450 248 114 107 chr11 89934256 89934377 -31909479 - Lx8 LINE L1 -2 7471 7344 6 1271 216 97 0 0 chr11 89934377 89934408 -31909448 + (CACCAT)n Simple_repeat Simple_repeat 5 35 0 6 1271 450 248 114 107 chr11 89934408 89934566 -31909290 - Lx8 LINE L1 -130 7343 7191 6 1271 371 303 22 17 chr11 89934694 89934872 -31908984 - LTR53 LTR ERVL -274 245 67 6 1271 317 167 10 0 chr11 89935219 89935321 -31908535 + (CAA)n Simple_repeat Simple_repeat 2 104 0 6 1271 978 172 50 133 chr11 89935796 89936037 -31907819 + URR1B DNA MER1_type 1 221 -4 6 1271 244 297 0 0 chr11 89936209 89936273 -31907583 + C-rich Low_complexity Low_complexity 2 65 0 7 1271 623 175 92 1 chr11 89936541 89936694 -31907162 - Lx4A LINE L1 -854 6122 5959 7 1271 4088 108 41 5 chr11 89936694 89937298 -31906558 + Lx4A LINE L1 6431 7056 -2 7 1271 258 32 0 0 chr11 89937300 89937331 -31906525 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1271 257 227 90 39 chr11 89937458 89937536 -31906320 - ORR1E LTR MaLR -22 337 256 7 1271 285 232 0 14 chr11 89937815 89937885 -31905971 - ORR1E LTR MaLR -290 69 1 7 1271 423 0 0 0 chr11 89939152 89939199 -31904657 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 7 1271 285 291 226 5 chr11 89939531 89939735 -31904121 + LTR53 LTR ERVL 267 515 -4 7 1271 200 304 77 43 chr11 89939990 89940107 -31903749 + MIR SINE MIR 60 185 -91 7 1271 629 310 6 0 chr11 89943748 89943919 -31899937 - ID_B1 SINE B4 -38 186 15 7 1271 228 35 0 0 chr11 89944264 89944293 -31899563 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1271 29 28 0 0 chr11 89944769 89944805 -31899051 + AT_rich Low_complexity Low_complexity 1 36 0 7 1271 570 279 0 7 chr11 89945817 89945965 -31897891 + B1_Mur1 SINE Alu 1 147 -2 7 1271 336 284 8 39 chr11 89946220 89946348 -31897508 - HAL1-2a_MD LINE L1 -529 2495 2372 7 1271 254 311 22 22 chr11 89947630 89947722 -31896134 - RMER12 LTR ERVK -481 841 750 7 1271 367 311 64 37 chr11 89948239 89948426 -31895430 + B3A SINE B2 1 192 -6 7 1271 967 167 26 41 chr11 89948444 89948638 -31895218 - URR1B DNA MER1_type -34 191 1 7 1271 884 324 33 12 chr11 89948639 89948973 -31894883 - L1MB8 LINE L1 -327 5851 5511 7 1271 420 20 0 0 chr11 89949090 89949139 -31894717 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1271 267 31 0 0 chr11 89949167 89949199 -31894657 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1271 312 316 9 67 chr11 89949214 89949319 -31894537 - RSINE1 SINE B4 -11 154 56 7 1271 246 62 0 0 chr11 89949961 89949993 -31893863 + (CTG)n Simple_repeat Simple_repeat 1 32 0 7 1271 268 180 0 0 chr11 89950190 89950240 -31893616 + MTE2a LTR MaLR 1 50 -329 7 1271 457 233 86 0 chr11 89950240 89950356 -31893500 - MTD LTR MaLR 0 419 294 7 1271 477 110 0 0 chr11 89950781 89950854 -31893002 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 1271 342 0 0 0 chr11 89951239 89951277 -31892579 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1271 510 17 0 0 chr11 89951277 89951335 -31892521 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1271 783 0 0 0 chr11 89951495 89951582 -31892274 + (TTC)n Simple_repeat Simple_repeat 1 87 0 7 1271 2373 207 84 77 chr11 89951674 89952307 -31891549 + Lx5 LINE L1 6414 7050 0 7 1271 745 226 12 0 chr11 89952460 89952624 -31891232 - BGLII_B LTR ERVK 0 441 276 7 1271 398 310 268 6 chr11 89952704 89953032 -31890824 + MER47B DNA MER2_type 4 417 -1 7 1271 743 50 0 10 chr11 89953121 89953222 -31890634 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1271 829 259 13 120 chr11 89953234 89953550 -31890306 - B4A SINE B4 -10 282 1 7 1271 664 276 28 65 chr11 89953582 89953799 -31890057 - B3 SINE B2 -7 209 1 7 1271 282 29 0 0 chr11 89954210 89954245 -31889611 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1271 1160 58 0 0 chr11 89954245 89954384 -31889472 - B1_Mus1 SINE Alu -9 139 1 7 1271 198 0 0 0 chr11 89954844 89954866 -31888990 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1271 1089 55 0 0 chr11 89958843 89958988 -31884868 + (CA)n Simple_repeat Simple_repeat 1 145 0 7 1271 428 0 19 0 chr11 89958990 89959042 -31884814 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1271 640 276 6 18 chr11 89959243 89959393 -31884463 + RSINE1 SINE B4 2 151 -14 7 1271 315 0 0 0 chr11 89959393 89959428 -31884428 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1271 477 0 0 0 chr11 89959428 89959480 -31884376 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1271 640 276 6 18 chr11 89959480 89959494 -31884362 + RSINE1 SINE B4 152 164 -1 7 1271 2756 215 74 83 chr11 89961212 89962076 -31881780 + RMER13A LTR ERVK 1 856 -4 7 1271 249 323 40 10 chr11 89962114 89962214 -31881642 - MER20 DNA MER1_type -91 128 26 7 1271 23 33 0 0 chr11 89963282 89963312 -31880544 + AT_rich Low_complexity Low_complexity 1 30 0 7 1271 296 62 62 0 chr11 89963471 89963535 -31880321 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1271 544 267 13 20 chr11 89964502 89964655 -31879201 - RSINE1 SINE B4 -10 155 4 7 1271 276 309 10 21 chr11 89964805 89964901 -31878955 - MLT1E3 LTR MaLR -7 617 523 7 1271 296 260 14 14 chr11 89964904 89964978 -31878878 + B4 SINE B4 1 74 -218 7 1271 513 32 0 0 chr11 89965188 89965251 -31878605 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1271 824 252 0 34 chr11 89965252 89965457 -31878399 - Lx7 LINE L1 -364 7332 7135 7 1271 452 262 0 28 chr11 89965466 89965572 -31878284 + B4 SINE B4 103 205 -87 7 1271 445 290 14 48 chr11 89965596 89965741 -31878115 + Lx8 LINE L1 7184 7323 -150 7 1271 291 54 0 0 chr11 89965752 89965789 -31878067 + (CACAG)n Simple_repeat Simple_repeat 4 40 0 7 1271 359 181 57 57 chr11 89966010 89966098 -31877758 + MTC-int LTR MaLR 816 903 -355 7 1271 575 182 0 31 chr11 89966114 89966244 -31877612 + MTD LTR MaLR 273 398 -21 7 1271 1217 209 25 25 chr11 89966303 89966422 -31877434 + RMER17C LTR ERVK 1 142 -268 7 1271 590 60 0 12 chr11 89966422 89966506 -31877350 + (TC)n Simple_repeat Simple_repeat 1 83 0 7 1271 1217 152 25 32 chr11 89966506 89966769 -31877087 + RMER17C LTR ERVK 143 402 -8 7 1271 234 245 0 0 chr11 89967047 89967100 -31876756 + B4 SINE B4 141 193 -99 7 1271 32 57 0 0 chr11 89968495 89968548 -31875308 + AT_rich Low_complexity Low_complexity 1 53 0 7 1271 722 102 25 17 chr11 89968596 89968715 -31875141 - B2_Mm2 SINE B2 -29 166 47 7 1271 1124 131 23 6 chr11 89968781 89968957 -31874899 - B2_Mm2 SINE B2 -14 181 3 7 1271 771 254 93 0 chr11 89969171 89969364 -31874492 + MTD LTR MaLR 1 211 -208 7 1271 296 237 0 0 chr11 89969646 89969705 -31874151 + MTD LTR MaLR 207 265 -156 7 1271 425 299 108 2 chr11 89969790 89969991 -31873865 + MLT1A0 LTR MaLR 142 404 -4 7 1271 237 33 0 0 chr11 89970693 89970723 -31873133 + (TTG)n Simple_repeat Simple_repeat 3 32 0 7 1271 225 0 0 0 chr11 89971104 89971129 -31872727 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 7 1271 1445 175 3 45 chr11 89971601 89971888 -31871968 - Lx5 LINE L1 -4 7046 6772 7 1271 265 312 85 48 chr11 89972382 89972547 -31871309 - MLT1F LTR MaLR -3 545 375 7 1271 231 331 42 7 chr11 89972547 89972690 -31871166 + L1MB8 LINE L1 4628 4775 -1371 7 1271 228 297 78 10 chr11 89972697 89972799 -31871057 + L1M2 LINE L1 4822 4930 -1213 7 1271 595 269 112 30 chr11 89972898 89973166 -31870690 + B4A SINE B4 3 292 0 7 1271 195 186 0 0 chr11 89973166 89973209 -31870647 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1271 529 303 94 24 chr11 89973240 89973741 -31870115 + L1MB8 LINE L1 5055 5600 -574 7 1271 254 260 184 34 chr11 89973760 89973999 -31869857 + L1MB8 LINE L1 5711 5985 -193 7 1271 210 37 0 0 chr11 89974008 89974035 -31869821 + (TATG)n Simple_repeat Simple_repeat 4 30 0 7 1271 263 268 27 108 chr11 89974141 89974448 -31869408 + MTEb LTR MaLR 86 408 0 7 1271 708 347 78 40 chr11 89974450 89974797 -31869059 - MLT1F-int LTR MaLR -242 1247 880 7 1271 1590 33 5 0 chr11 89974797 89974981 -31868875 - B2_Mm1t SINE B2 -7 186 2 7 1271 708 347 78 40 chr11 89974981 89975080 -31868776 - MLT1F-int LTR MaLR -610 879 784 7 1271 314 295 86 21 chr11 89975173 89975360 -31868496 - MLT1F-int LTR MaLR -887 602 404 7 1271 290 336 18 0 chr11 89975484 89975594 -31868262 - MLT1F-int LTR MaLR -1377 112 1 7 1271 401 343 62 0 chr11 89975604 89975814 -31868042 - MLT1F LTR MaLR -10 538 316 7 1271 367 319 84 38 chr11 89975860 89976098 -31867758 + MLT1F LTR MaLR 103 351 -197 7 1271 186 43 0 0 chr11 89976367 89976390 -31867466 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1271 415 235 87 14 chr11 89976538 89976676 -31867180 + HAL1 LINE L1 1513 1660 -847 7 1271 226 235 86 29 chr11 89976817 89976887 -31866969 + B4A SINE B4 169 242 -50 7 1271 468 0 0 0 chr11 89976937 89976989 -31866867 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1271 357 353 0 28 chr11 89977311 89977454 -31866402 + RSINE1 SINE B4 2 140 -25 7 1271 22 80 0 0 chr11 89977465 89977515 -31866341 + AT_rich Low_complexity Low_complexity 1 50 0 7 1271 488 68 14 0 chr11 89979166 89979239 -31864617 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1271 234 0 0 0 chr11 89980995 89981021 -31862835 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1271 347 41 0 20 chr11 89981021 89981071 -31862785 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1271 1077 303 114 17 chr11 89982147 89982267 -31861589 + Lx8 LINE L1 6581 6710 -763 7 1271 189 0 0 0 chr11 89982267 89982288 -31861568 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 7 1271 1077 311 94 15 chr11 89982288 89982963 -31860893 + Lx8 LINE L1 6711 7471 -2 7 1271 243 200 0 0 chr11 89982989 89983039 -31860817 - MTE2a LTR MaLR -327 52 3 7 1271 243 0 0 0 chr11 89983128 89983155 -31860701 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1271 282 56 0 0 chr11 89983754 89983790 -31860066 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1271 3417 61 34 7 chr11 89984715 89985161 -31858695 + L1Md_F2 LINE L1 6123 6580 -2 7 1271 592 310 165 7 chr11 89985696 89986138 -31857718 + L1M3 LINE L1 2596 3107 -3033 7 1271 327 209 258 30 chr11 89986159 89986414 -31857442 + L1M3 LINE L1 3359 3679 -2467 7 1271 679 279 205 27 chr11 89986692 89986950 -31856906 + Lx8 LINE L1 6952 7255 -218 7 1271 542 236 0 64 chr11 89986948 89987120 -31856736 + Lx4B LINE L1 6894 7054 -4 7 1271 509 266 93 33 chr11 89987139 89987353 -31856503 + Lx8 LINE L1 7239 7465 -8 7 1271 885 305 62 41 chr11 89987364 89987851 -31856005 - Lx7 LINE L1 -1789 5907 5378 7 1271 485 297 117 18 chr11 89987825 89988151 -31855705 + L1M3 LINE L1 4933 5290 -850 7 1271 453 281 47 144 chr11 89988176 89988496 -31855360 + B4 SINE B4 2 290 -2 7 1271 211 349 138 0 chr11 89990708 89990817 -31853039 - L2b LINE L2 0 3375 3252 7 1271 205 270 0 39 chr11 89991078 89991155 -31852701 + GA-rich Low_complexity Low_complexity 2 75 0 7 1271 234 81 0 0 chr11 89991772 89991809 -31852047 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1271 375 151 0 0 chr11 89991809 89991902 -31851954 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 7 1271 381 206 0 0 chr11 89991922 89992014 -31851842 + CT-rich Low_complexity Low_complexity 1 92 0 7 1271 1104 276 101 55 chr11 89992522 89993139 -31850717 + L1_Rod LINE L1 5185 5829 -18 8 1271 557 14 14 0 chr11 89993168 89993238 -31850618 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1271 1197 133 15 0 chr11 89995051 89995246 -31848610 - Lx2 LINE L1 -26 6971 6774 8 1271 22 35 0 0 chr11 89995654 89995683 -31848173 + AT_rich Low_complexity Low_complexity 1 29 0 8 1271 406 226 0 12 chr11 89995732 89995817 -31848039 - PB1D9 SINE Alu -32 88 5 8 1271 27 0 0 0 chr11 89996418 89996445 -31847411 + AT_rich Low_complexity Low_complexity 1 27 0 8 1271 732 253 0 79 chr11 89997064 89997279 -31846577 + B3A SINE B2 1 198 0 8 1271 1027 107 199 46 chr11 89998020 89998216 -31845640 - URR1A DNA MER1_type 0 226 1 8 1271 188 301 27 0 chr11 89998300 89998373 -31845483 + L2b LINE L2 3053 3127 -248 8 1271 225 225 59 67 chr11 89998867 89998986 -31844870 + L2c LINE L2 3048 3165 -222 8 1271 182 237 0 0 chr11 89999199 89999237 -31844619 + MIRc SINE MIR 117 154 -114 8 1271 358 320 76 19 chr11 89999596 89999806 -31844050 - MLT1A0 LTR MaLR 0 365 144 8 1271 371 184 20 0 chr11 89999816 89999914 -31843942 - Lx5 LINE L1 -16 7034 6935 8 1271 510 108 11 11 chr11 89999906 90000000 -31843856 + L1_Mur2 LINE L1 5211 5304 -573 8 1271 2435 158 19 5 chr11 90000000 90000413 -31843443 + L1_Mur2 LINE L1 5305 5723 -154 1 1271 232 303 44 22 chr11 90000435 90000526 -31843330 - MLT1A LTR MaLR -280 94 2 2 1271 459 0 0 0 chr11 90000891 90000942 -31842914 + (CTG)n Simple_repeat Simple_repeat 3 53 0 3 1271 418 294 34 0 chr11 90001457 90001576 -31842280 - B4A SINE B4 -169 123 1 4 1271 517 312 31 18 chr11 90002279 90002442 -31841414 + RSINE1 SINE B4 1 165 0 5 1271 717 278 123 16 chr11 90002467 90002719 -31841137 + B4A SINE B4 6 284 -8 6 1271 609 313 94 11 chr11 90002878 90003143 -31840713 + B4A SINE B4 2 288 -4 7 1271 552 138 0 0 chr11 90003166 90003282 -31840574 + (GA)n Simple_repeat Simple_repeat 2 117 0 8 1271 1146 205 188 35 chr11 90004854 90005208 -31838648 - MTD LTR MaLR -2 417 10 9 1271 534 339 10 0 chr11 90005597 90005789 -31838067 - B3A SINE B2 -4 194 1 1 1271 1457 228 91 11 chr11 90006312 90006663 -31837193 + MTE2b LTR MaLR 1 379 0 1 1271 821 255 75 0 chr11 90006724 90006924 -31836932 - B3 SINE B2 -1 215 1 1 1271 206 309 0 20 chr11 90007148 90007247 -31836609 + CT-rich Low_complexity Low_complexity 2 98 0 1 1271 855 259 89 15 chr11 90008712 90008982 -31834874 + B4A SINE B4 3 292 0 1 1271 404 200 11 0 chr11 90008984 90009079 -31834777 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1271 789 49 0 0 chr11 90009813 90009915 -31833941 + (GAGTG)n Simple_repeat Simple_repeat 3 104 0 1 1271 312 127 0 0 chr11 90010422 90010477 -31833379 + (CCA)n Simple_repeat Simple_repeat 3 57 0 1 1271 721 314 48 4 chr11 90011242 90011472 -31832384 + B4A SINE B4 31 270 -22 1 1271 431 18 18 0 chr11 90011478 90011534 -31832322 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1271 191 282 50 33 chr11 90012876 90012997 -31830859 + L2 LINE L2 1744 1866 -1553 2 1271 492 239 58 36 chr11 90013269 90013408 -31830448 - B4A SINE B4 -150 142 1 2 1271 4154 48 0 4 chr11 90013564 90014063 -31829793 - L1Md_F2 LINE L1 -14 6568 6072 2 1271 1976 26 13 4 chr11 90014063 90014296 -31829560 + L1Md_F2 LINE L1 5826 6060 -522 2 1271 731 295 27 40 chr11 90014478 90014774 -31829082 - MTE2a LTR MaLR -14 405 133 2 1271 281 361 37 37 chr11 90014903 90015067 -31828789 + MER20 DNA MER1_type 25 188 -31 2 1271 390 31 15 30 chr11 90015525 90015591 -31828265 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 2 1271 310 252 95 19 chr11 90015664 90015769 -31828087 - PB1D10 SINE Alu -1 116 4 2 1271 974 168 27 5 chr11 90015881 90016067 -31827789 + ORR1B1 LTR MaLR 156 345 -49 2 1271 739 247 154 16 chr11 90017337 90017584 -31826272 + B4 SINE B4 2 282 -10 2 1271 462 18 0 0 chr11 90017867 90017922 -31825934 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1271 395 231 19 9 chr11 90018131 90018236 -31825620 + PB1D10 SINE Alu 12 117 0 3 1271 491 291 0 0 chr11 90018318 90018445 -31825411 + ID_B1 SINE B4 85 211 -13 3 1271 342 0 0 0 chr11 90018486 90018524 -31825332 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1271 1327 148 5 0 chr11 90018625 90018834 -31825022 + B3 SINE B2 2 211 -5 3 1271 287 206 14 14 chr11 90019587 90019656 -31824200 - MTE2b LTR MaLR -24 355 287 3 1271 477 0 0 0 chr11 90020090 90020143 -31823713 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1271 366 80 0 0 chr11 90020243 90020293 -31823563 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1271 1402 158 29 0 chr11 90020414 90020655 -31823201 - L1_Mm LINE L1 -845 5038 4791 3 1271 4747 114 30 12 chr11 90020655 90021385 -31822471 + Lx LINE L1 5906 6648 -6 3 1271 1313 32 0 31 chr11 90023091 90023383 -31820473 + (TTCC)n Simple_repeat Simple_repeat 1 283 0 3 1271 960 84 32 0 chr11 90023383 90023538 -31820318 + (TTCCC)n Simple_repeat Simple_repeat 2 161 0 4 1271 635 108 0 11 chr11 90023538 90023626 -31820230 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 4 1271 252 222 105 53 chr11 90023626 90023702 -31820154 - ID4_ SINE ID 0 83 4 4 1271 735 12 0 0 chr11 90024013 90024097 -31819759 + (TCC)n Simple_repeat Simple_repeat 2 85 0 4 1271 365 200 0 13 chr11 90024097 90024173 -31819683 - B4 SINE B4 -215 77 3 4 1271 807 133 54 8 chr11 90025295 90025424 -31818432 + B1_Mur4 SINE Alu 2 136 -14 4 1271 192 279 58 0 chr11 90026136 90026222 -31817634 + MIR SINE MIR 92 182 -80 4 1271 975 286 7 47 chr11 90028834 90029135 -31814721 - B4A SINE B4 -2 290 2 4 1271 32 0 0 0 chr11 90030101 90030133 -31813723 + AT_rich Low_complexity Low_complexity 1 32 0 4 1271 1388 77 39 0 chr11 90030299 90030480 -31813376 + B2_Mm2 SINE B2 3 190 -5 4 1271 318 50 0 0 chr11 90031791 90031831 -31812025 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 5 1271 273 254 0 0 chr11 90032593 90032652 -31811204 - MLT1J1 LTR MaLR -342 102 44 5 1271 240 258 15 0 chr11 90033117 90033183 -31810673 + ID4_ SINE ID 3 69 -14 5 1271 239 286 0 0 chr11 90033198 90033254 -31810602 + GA-rich Low_complexity Low_complexity 2 57 0 5 1271 26 0 0 0 chr11 90033288 90033314 -31810542 + AT_rich Low_complexity Low_complexity 1 26 0 5 1271 264 247 62 73 chr11 90033351 90033447 -31810409 + B1F SINE Alu 53 147 -2 5 1271 216 263 0 34 chr11 90033454 90033513 -31810343 + GA-rich Low_complexity Low_complexity 4 60 0 5 1271 220 337 126 6 chr11 90033843 90034025 -31809831 + MIR SINE MIR 40 243 -19 5 1271 1863 134 62 6 chr11 90034070 90034392 -31809464 + RLTR14 LTR ERV1 1 340 -42 5 1271 2999 61 22 25 chr11 90034578 90034979 -31808877 + MTB LTR MaLR 1 400 0 5 1271 692 292 49 46 chr11 90035028 90035376 -31808480 - MLT1B LTR MaLR -8 382 34 6 1271 1265 73 11 0 chr11 90035391 90035568 -31808288 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 6 1271 709 283 6 6 chr11 90035694 90035875 -31807981 + ID_B1 SINE B4 5 185 -39 6 1271 249 253 53 42 chr11 90035792 90035887 -31807969 + PB1D10 SINE Alu 22 117 0 6 1271 541 296 23 99 chr11 90035938 90036280 -31807576 + MTEa LTR MaLR 55 370 -9 6 1271 300 329 132 29 chr11 90036535 90037079 -31806777 - L2a LINE L2 -208 3218 2614 6 1271 446 306 80 32 chr11 90037122 90037372 -31806484 - LTR89 LTR ERVL? -438 441 180 6 1271 296 305 121 40 chr11 90038039 90038213 -31805643 + MLT1E2 LTR MaLR 1 188 -439 6 1271 228 270 43 201 chr11 90038289 90038311 -31805545 + PB1D9 SINE Alu 1 115 -3 6 1271 477 205 43 26 chr11 90038311 90038426 -31805430 + ID_B1 SINE B4 102 218 -6 6 1271 252 143 0 0 chr11 90038428 90038470 -31805386 + (CACCAT)n Simple_repeat Simple_repeat 3 44 0 7 1271 243 373 17 0 chr11 90038495 90038612 -31805244 + MLT1E2 LTR MaLR 309 427 -78 6 1271 1006 91 0 0 chr11 90038612 90038747 -31805109 + B1_Mus2 SINE Alu 2 136 -11 7 1271 311 0 0 25 chr11 90038747 90038787 -31805069 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1271 345 47 0 0 chr11 90039402 90039445 -31804411 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1271 405 149 271 0 chr11 90039677 90039784 -31804072 - MTC LTR MaLR -285 136 1 7 1271 504 304 22 7 chr11 90040194 90040333 -31803523 - RSINE1 SINE B4 -21 144 4 7 1271 543 266 8 8 chr11 90040727 90040856 -31803000 - B3 SINE B2 -86 130 2 7 1271 291 270 22 0 chr11 90041668 90041757 -31802099 - L1M6 LINE L1 -6403 93 3 7 1271 180 0 0 0 chr11 90042016 90042036 -31801820 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1271 635 271 178 32 chr11 90042036 90042400 -31801456 - MLT1C LTR MaLR -43 424 6 7 1271 1198 178 27 9 chr11 90042593 90042814 -31801042 + URR1B DNA MER1_type 1 225 0 8 1271 389 281 92 37 chr11 90042905 90043123 -31800733 + Lx8 LINE L1 7239 7468 -5 8 1271 380 268 96 46 chr11 90043140 90043379 -31800477 + Lx8 LINE L1 7221 7471 -2 8 1271 286 243 17 51 chr11 90043281 90043398 -31800458 + RMER1C Other Other 1226 1338 -4 8 1271 261 0 0 0 chr11 90043427 90043456 -31800400 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1271 405 0 0 0 chr11 90043456 90043500 -31800356 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1271 420 199 0 20 chr11 90043512 90043618 -31800238 + ID4_ SINE ID 3 103 -49 8 1271 2135 139 70 52 chr11 90043691 90044078 -31799778 - ORR1B1 LTR MaLR 0 394 1 8 1271 258 296 0 14 chr11 90044472 90044544 -31799312 + GA-rich Low_complexity Low_complexity 3 73 0 8 1271 190 255 0 52 chr11 90044695 90044753 -31799103 + L2c LINE L2 3332 3386 -1 8 1271 593 118 0 19 chr11 90044957 90044974 -31798882 + (GAA)n Simple_repeat Simple_repeat 1 17 0 9 1271 1203 107 0 0 chr11 90044974 90045152 -31798704 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 9 1271 1326 91 0 6 chr11 90045152 90045417 -31798439 + (GAA)n Simple_repeat Simple_repeat 1 263 0 9 1271 450 233 0 11 chr11 90046350 90046441 -31797415 - 5S rRNA rRNA -31 90 1 9 1272 1030 138 0 0 chr11 90046712 90046879 -31796977 - URR1A DNA MER1_type 0 226 60 9 1272 864 295 73 50 chr11 90047162 90047519 -31796337 - MTEa LTR MaLR -4 375 11 9 1272 622 253 29 69 chr11 90047735 90047939 -31795917 - B3A SINE B2 -1 197 2 9 1272 1248 234 52 33 chr11 90048105 90048290 -31795566 - ORR1D1 LTR MaLR 0 374 180 9 1272 432 0 0 0 chr11 90048290 90048338 -31795518 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 9 1272 1248 234 52 33 chr11 90048338 90048519 -31795337 - ORR1D1 LTR MaLR -195 179 1 9 1272 326 91 18 0 chr11 90048560 90048615 -31795241 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 9 1272 727 90 16 0 chr11 90048769 90048891 -31794965 + (TC)n Simple_repeat Simple_repeat 1 124 0 1 1272 591 295 101 26 chr11 90050037 90050305 -31793551 + B4A SINE B4 3 290 -2 1 1272 309 305 66 104 chr11 90051590 90051737 -31792119 + B3 SINE B2 4 152 -64 1 1272 408 97 0 0 chr11 90051737 90051799 -31792057 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1272 309 305 66 104 chr11 90051799 90051834 -31792022 + B3 SINE B2 153 179 -37 1 1272 369 56 19 0 chr11 90051856 90051910 -31791946 - B1_Mus2 SINE Alu 0 147 93 1 1272 270 81 0 0 chr11 90051959 90051996 -31791860 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 1272 189 107 0 0 chr11 90052413 90052441 -31791415 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1272 782 111 8 0 chr11 90052957 90053074 -31790782 - B1_Mus1 SINE Alu 0 148 31 1 1272 981 248 9 5 chr11 90053154 90053369 -31790487 - B3 SINE B2 0 216 1 1 1272 314 281 19 111 chr11 90054415 90054631 -31789225 + MLT1C LTR MaLR 1 196 -271 1 1272 320 309 0 41 chr11 90054639 90054737 -31789119 + PB1D10 SINE Alu 23 116 -1 1 1272 238 346 20 0 chr11 90054810 90054911 -31788945 + MLT1C LTR MaLR 289 391 -76 1 1272 1787 254 96 60 chr11 90054935 90055772 -31788084 - RCHARR1 DNA MER1_type -2 972 106 1 1272 326 224 20 7 chr11 90055954 90056107 -31787749 + CT-rich Low_complexity Low_complexity 2 156 0 1 1272 462 18 0 0 chr11 90056107 90056162 -31787694 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1272 753 238 8 103 chr11 90056283 90056517 -31787339 - B3 SINE B2 0 216 5 1 1272 982 144 12 3 chr11 90056863 90057183 -31786673 + (TG)n Simple_repeat Simple_repeat 1 323 0 1 1272 682 180 8 8 chr11 90058737 90058866 -31784990 + B1_Mus2 SINE Alu 7 135 -12 1 1272 348 24 0 0 chr11 90059240 90059281 -31784575 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1272 333 0 0 0 chr11 90059281 90059317 -31784539 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1272 21 0 0 0 chr11 90059906 90059927 -31783929 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 1494 43 0 56 chr11 90059957 90060153 -31783703 + B2_Mm1a SINE B2 1 185 -8 1 1272 290 232 23 23 chr11 90060293 90060421 -31783435 + GA-rich Low_complexity Low_complexity 4 131 0 1 1272 222 270 48 0 chr11 90061740 90061803 -31782053 + RSINE1 SINE B4 75 140 -25 1 1272 447 19 0 0 chr11 90061851 90061903 -31781953 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1272 410 229 0 68 chr11 90062376 90062493 -31781363 + PB1D10 SINE Alu 8 116 -1 1 1272 20446 40 2 1 chr11 90062688 90065845 -31778011 - L1Md_F3 LINE L1 -3 6581 3420 1 1272 297 0 0 0 chr11 90066197 90066230 -31777626 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1272 713 299 50 0 chr11 90066311 90066512 -31777344 + ID_B1 SINE B4 14 224 0 1 1272 201 241 0 0 chr11 90066577 90066631 -31777225 + GA-rich Low_complexity Low_complexity 1 54 0 1 1272 1194 107 0 0 chr11 90066678 90066855 -31777001 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 1272 680 286 54 39 chr11 90067880 90068160 -31775696 + MTD LTR MaLR 1 284 -135 1 1272 268 261 31 0 chr11 90068196 90068261 -31775595 + MTD LTR MaLR 268 334 -85 1 1272 189 0 0 0 chr11 90068281 90068302 -31775554 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1272 360 111 0 0 chr11 90068311 90068365 -31775491 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1272 821 283 11 70 chr11 90068370 90068554 -31775302 - B4A SINE B4 -26 266 97 1 1272 1069 72 114 40 chr11 90068554 90068729 -31775127 - B2_Mm2 SINE B2 -7 188 1 1 1272 821 283 11 70 chr11 90068729 90068817 -31775039 - B4A SINE B4 -196 96 10 1 1272 318 50 0 0 chr11 90068962 90069002 -31774854 + (TTAG)n Simple_repeat Simple_repeat 1 40 0 1 1272 350 352 0 0 chr11 90069005 90069110 -31774746 - PB1D10 SINE Alu -8 109 5 1 1272 623 301 92 62 chr11 90069481 90069903 -31773953 + MLT1C LTR MaLR 33 467 0 1 1272 743 258 108 38 chr11 90070904 90071218 -31772638 - ORR1E LTR MaLR -20 339 4 1 1272 517 282 56 46 chr11 90071482 90071679 -31772177 - ID_B1 SINE B4 -23 201 3 1 1272 854 157 211 26 chr11 90071850 90072040 -31771816 - URR1B DNA MER1_type 0 225 1 1 1272 221 386 62 33 chr11 90072103 90072376 -31771480 - L3 LINE CR1 -63 4426 4146 1 1272 666 259 52 12 chr11 90072402 90072574 -31771282 - MTEa LTR MaLR -200 179 1 1 1272 405 274 0 57 chr11 90072780 90072904 -31770952 - PB1D7 SINE Alu 0 120 4 1 1272 397 267 190 8 chr11 90073194 90073315 -31770541 + RSINE1 SINE B4 4 146 -19 1 1272 450 36 0 0 chr11 90073321 90073377 -31770479 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1272 756 195 12 30 chr11 90073995 90074164 -31769692 + B3 SINE B2 49 214 -2 1 1272 23 54 0 0 chr11 90074710 90074747 -31769109 + AT_rich Low_complexity Low_complexity 1 37 0 1 1272 200 116 70 0 chr11 90074915 90074958 -31768898 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1272 1239 41 0 0 chr11 90074958 90075104 -31768752 - B1_Mm SINE Alu 0 147 2 1 1272 570 281 29 63 chr11 90075331 90075469 -31768387 + MLT1B LTR MaLR 32 171 -219 1 1272 870 264 137 112 chr11 90075469 90076067 -31767789 - RLTR18 LTR ERVK -3 613 1 1 1272 570 281 29 63 chr11 90076067 90076167 -31767689 + MLT1B LTR MaLR 172 262 -128 1 1272 628 142 0 24 chr11 90076408 90076531 -31767325 + GA-rich Low_complexity Low_complexity 2 121 0 1 1272 343 279 58 82 chr11 90077431 90077638 -31766218 + Lx8 LINE L1 7271 7472 -1 1 1272 25 51 0 0 chr11 90077682 90077721 -31766135 + AT_rich Low_complexity Low_complexity 1 39 0 1 1272 719 102 16 43 chr11 90078379 90078564 -31765292 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1272 201 169 0 0 chr11 90078569 90078628 -31765228 + (CAAA)n Simple_repeat Simple_repeat 4 62 0 1 1272 193 29 29 29 chr11 90078649 90078684 -31765172 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 1 1272 720 118 0 0 chr11 90078685 90078812 -31765044 + (CATA)n Simple_repeat Simple_repeat 2 128 0 1 1272 485 16 0 16 chr11 90078842 90078905 -31764951 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 1 1272 298 300 17 43 chr11 90079640 90079755 -31764101 + RLTR42-int LTR ERVK 1277 1388 -4134 1 1272 444 19 0 0 chr11 90080878 90080931 -31762925 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1272 562 271 0 15 chr11 90080986 90081121 -31762735 - B3A SINE B2 -65 133 1 1 1272 1238 179 9 13 chr11 90081126 90081352 -31762504 - URR1B DNA MER1_type 0 225 1 1 1272 180 0 0 0 chr11 90082221 90082241 -31761615 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1272 479 83 0 0 chr11 90083362 90083434 -31760422 - L1_Mus2 LINE L1 -1 6565 6494 1 1272 3845 182 75 53 chr11 90083435 90084300 -31759556 - RMER19B LTR ERVK -18 884 1 1 1272 539 15 15 0 chr11 90084379 90084447 -31759409 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 1 1272 405 274 42 78 chr11 90085031 90085197 -31758659 - RSINE1 SINE B4 0 165 6 1 1272 592 302 88 44 chr11 90085393 90085823 -31758033 + L1MB2 LINE L1 5719 6167 -4 1 1272 320 335 49 68 chr11 90085976 90086181 -31757675 + B4A SINE B4 82 282 -10 1 1272 3711 189 66 140 chr11 90086824 90087923 -31755933 + RMER1B Other Other 43 1330 -12 1 1272 336 61 0 0 chr11 90088327 90088346 -31755510 + (T)n Simple_repeat Simple_repeat 1 19 0 1 1272 342 0 0 0 chr11 90088346 90088384 -31755472 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1272 336 61 0 0 chr11 90088384 90088413 -31755443 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1272 240 296 178 0 chr11 90088485 90088620 -31755236 - MIR SINE MIR -30 232 74 1 1272 333 235 0 0 chr11 90089108 90089193 -31754663 + CT-rich Low_complexity Low_complexity 1 85 0 1 1272 223 250 0 0 chr11 90089196 90089248 -31754608 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1272 450 0 0 0 chr11 90090240 90090290 -31753566 + (CTTG)n Simple_repeat Simple_repeat 1 50 0 1 1272 338 276 135 73 chr11 90090370 90090644 -31753212 + B4 SINE B4 2 292 0 1 1272 339 85 0 0 chr11 90090684 90090731 -31753125 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1272 629 259 112 11 chr11 90092416 90092603 -31751253 - B3 SINE B2 0 216 11 1 1272 273 146 0 0 chr11 90092603 90092651 -31751205 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1272 1032 188 43 14 chr11 90092698 90092908 -31750948 - B3 SINE B2 0 216 1 1 1272 282 314 28 56 chr11 90093370 90093478 -31750378 + LTR16A LTR ERVL 12 116 -335 1 1272 545 110 20 0 chr11 90093536 90093636 -31750220 - L1_Mus3 LINE L1 -4 6634 6533 1 1272 218 314 85 69 chr11 90093853 90093983 -31749873 + MamSINE1 SINE tRNA 43 174 -116 1 1272 582 309 7 0 chr11 90094630 90094779 -31749077 - MTEa LTR MaLR -207 172 23 1 1272 1027 307 64 9 chr11 90094778 90095120 -31748736 - MTEa-int LTR MaLR -445 1135 775 1 1272 566 275 70 0 chr11 90095168 90095339 -31748517 - MTEa-int LTR MaLR -1397 183 1 1 1272 818 298 82 25 chr11 90095341 90095696 -31748160 - MTEa LTR MaLR -4 375 1 1 1272 194 233 0 0 chr11 90095938 90095981 -31747875 + L3b LINE CR1 255 297 -185 1 1272 21 0 0 0 chr11 90096252 90096273 -31747583 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 610 291 151 28 chr11 90096274 90096583 -31747273 - Lx7 LINE L1 -34 7439 7084 1 1272 424 295 58 85 chr11 90096771 90097144 -31746712 + ORR1E LTR MaLR 1 357 -13 1 1272 303 268 0 2 chr11 90097980 90098049 -31745807 + ID4 SINE ID 3 70 -13 1 1272 361 221 35 0 chr11 90098056 90098201 -31745655 + (TA)n Simple_repeat Simple_repeat 2 151 0 1 1272 351 244 25 25 chr11 90099459 90099581 -31744275 + LTR48 LTR ERV1 479 600 -187 1 1272 210 179 0 0 chr11 90099769 90099808 -31744048 - MIR SINE MIR -118 144 106 1 1272 996 253 39 108 chr11 90100261 90100677 -31743179 + MTD LTR MaLR 18 404 -15 1 1272 590 80 23 0 chr11 90100945 90101033 -31742823 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 1 1272 264 156 25 49 chr11 90101034 90101115 -31742741 + T-rich Low_complexity Low_complexity 2 80 0 1 1272 309 243 85 58 chr11 90101846 90102034 -31741822 - MER53 DNA hAT 0 193 1 2 1272 183 315 0 0 chr11 90102185 90102239 -31741617 + MIR SINE MIR 91 144 -118 2 1272 1089 302 112 26 chr11 90102277 90102859 -31740997 - MER67B LTR ERV1 -2 659 28 2 1272 495 0 0 0 chr11 90103079 90103134 -31740722 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1272 337 382 13 0 chr11 90103143 90103300 -31740556 - Lx8 LINE L1 -309 7164 7006 2 1272 614 315 83 52 chr11 90103327 90103549 -31740307 - Lx8 LINE L1 -538 6935 6715 2 1272 208 0 62 0 chr11 90103549 90103581 -31740275 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1272 1117 73 0 0 chr11 90103581 90103718 -31740138 - B1_Mus1 SINE Alu -10 138 2 2 1272 614 315 83 52 chr11 90103718 90103842 -31740014 - Lx8 LINE L1 -759 6714 6578 2 1272 290 371 83 0 chr11 90103853 90103985 -31739871 - ID_B1 SINE B4 -8 216 74 2 1272 492 322 46 36 chr11 90104016 90104235 -31739621 + B4 SINE B4 72 292 0 2 1272 507 208 0 0 chr11 90104240 90104370 -31739486 + (CA)n Simple_repeat Simple_repeat 2 131 0 2 1272 511 319 98 6 chr11 90104576 90104853 -31739003 - MLT1J LTR MaLR -121 327 56 2 1272 459 0 0 0 chr11 90105717 90105768 -31738088 + (CATA)n Simple_repeat Simple_repeat 2 52 0 2 1272 282 56 0 0 chr11 90106008 90106044 -31737812 + (CATA)n Simple_repeat Simple_repeat 3 38 0 2 1272 470 291 19 50 chr11 90106059 90106218 -31737638 - MER2B DNA MER2_type -98 238 85 2 1272 303 308 9 61 chr11 90107201 90107315 -31736541 - PB1 SINE Alu -4 123 16 2 1272 751 290 66 38 chr11 90107747 90108034 -31735822 - MTEb LTR MaLR -1 378 84 2 1272 390 241 69 69 chr11 90108640 90108756 -31735100 - B4A SINE B4 0 292 177 2 1272 241 353 0 10 chr11 90108763 90108866 -31734990 - L1M4 LINE L1 -266 5912 5811 2 1272 300 234 103 51 chr11 90108889 90109006 -31734850 - L1MC1 LINE L1 -25 6308 6186 2 1272 394 247 0 46 chr11 90109358 90109480 -31734376 - L1MA4 LINE L1 -355 5945 5834 2 1272 326 246 0 68 chr11 90109517 90109591 -31734265 - 7SK RNA RNA -148 183 115 2 1272 369 207 32 79 chr11 90109608 90109734 -31734122 - L1MA4 LINE L1 -474 5826 5707 2 1272 206 238 11 56 chr11 90110706 90110795 -31733061 + G-rich Low_complexity Low_complexity 6 90 0 2 1272 234 0 0 0 chr11 90113334 90113360 -31730496 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1272 2369 171 56 40 chr11 90114254 90114338 -31729518 - RLTR20B1 LTR ERVK -7 556 470 2 1272 333 0 0 0 chr11 90114338 90114375 -31729481 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1272 2369 171 56 40 chr11 90114375 90114794 -31729062 - RLTR20B1 LTR ERVK -94 469 47 2 1272 265 191 0 0 chr11 90115776 90115818 -31728038 - RMER30 DNA MER1_type -151 51 10 2 1272 443 352 56 22 chr11 90116315 90116495 -31727361 - B4A SINE B4 0 292 107 2 1272 372 133 0 0 chr11 90116501 90116561 -31727295 + (TCC)n Simple_repeat Simple_repeat 2 61 0 2 1272 968 138 7 26 chr11 90116564 90116869 -31726987 + CT-rich Low_complexity Low_complexity 1 298 0 2 1272 280 256 24 49 chr11 90116869 90116951 -31726905 - B4A SINE B4 -205 87 8 2 1272 492 18 0 0 chr11 90120171 90120228 -31723628 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 2 1272 198 0 0 0 chr11 90120838 90120860 -31722996 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1272 201 139 0 0 chr11 90120875 90120918 -31722938 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1272 249 33 0 0 chr11 90120991 90121021 -31722835 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1272 219 103 0 0 chr11 90121036 90121075 -31722781 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1272 205 290 124 53 chr11 90121698 90121811 -31722045 + MIRc SINE MIR 119 239 -29 2 1272 275 353 58 10 chr11 90122083 90122186 -31721670 + PB1D10 SINE Alu 1 108 -9 2 1272 315 306 82 76 chr11 90122193 90122238 -31721618 + B4 SINE B4 40 223 -68 2 1272 569 265 65 14 chr11 90122238 90122376 -31721480 + B1F SINE Alu 3 147 -2 2 1272 189 107 0 0 chr11 90122862 90122890 -31720966 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2 1272 2007 108 54 22 chr11 90122932 90123246 -31720610 - Lx4A LINE L1 0 7058 6735 2 1272 288 291 102 46 chr11 90123539 90123647 -31720209 - PB1 SINE Alu -2 125 12 2 1272 1803 143 90 0 chr11 90123954 90124254 -31719602 + IAPEY3_LTR LTR ERVK 1 327 -5 2 1272 452 252 10 10 chr11 90124418 90124430 -31719426 + ID SINE ID 70 81 -143 2 1272 295 230 47 57 chr11 90124430 90124536 -31719320 + PB1D9 SINE Alu 1 105 -15 2 1272 929 212 9 17 chr11 90124573 90124791 -31719065 - B3A SINE B2 -7 209 6 2 1272 185 0 0 39 chr11 90125031 90125057 -31718799 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1272 1152 105 152 5 chr11 90125138 90125329 -31718527 + URR1A DNA MER1_type 8 226 0 2 1272 711 175 24 0 chr11 90128017 90128143 -31715713 + Lx9 LINE L1 7142 7270 -374 2 1272 886 291 102 6 chr11 90132027 90132349 -31711507 + MLT2D LTR ERVL 1 353 -61 2 1272 369 0 0 0 chr11 90132358 90132399 -31711457 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1272 345 109 0 0 chr11 90132401 90132465 -31711391 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1272 246 215 62 0 chr11 90132933 90132998 -31710858 + L1ME2 LINE L1 3025 3093 -3053 2 1272 218 255 0 0 chr11 90133072 90133123 -31710733 + GA-rich Low_complexity Low_complexity 2 52 0 2 1272 324 310 0 0 chr11 90133260 90133347 -31710509 + PB1D10 SINE Alu 1 87 -30 2 1272 560 300 123 52 chr11 90133395 90133933 -31709923 + L1ME2 LINE L1 3613 4188 -1958 2 1272 231 271 14 0 chr11 90135040 90135110 -31708746 + L1ME2 LINE L1 5384 5454 -710 2 1272 223 212 15 15 chr11 90135387 90135454 -31708402 + A-rich Low_complexity Low_complexity 2 68 0 2 1272 233 316 8 73 chr11 90135490 90135613 -31708243 + L1ME2 LINE L1 5909 6023 -141 2 1272 486 62 0 0 chr11 90135639 90135703 -31708153 + RMER17C LTR ERVK 1 64 -346 2 1272 233 350 98 40 chr11 90135999 90136173 -31707683 - MIRc SINE MIR -36 232 46 2 1272 266 217 0 14 chr11 90136319 90136389 -31707467 + GA-rich Low_complexity Low_complexity 2 70 0 2 1272 928 207 3 127 chr11 90136390 90136760 -31707096 - RMER17C LTR ERVK -13 397 74 2 1272 25 0 0 0 chr11 90138300 90138325 -31705531 + AT_rich Low_complexity Low_complexity 1 25 0 2 1272 762 11 0 0 chr11 90140025 90140112 -31703744 + (TC)n Simple_repeat Simple_repeat 1 87 0 2 1272 333 285 45 29 chr11 90140148 90140267 -31703589 + B1F2 SINE Alu 5 135 -14 2 1272 684 0 0 0 chr11 90140267 90140343 -31703513 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2 1272 459 0 0 0 chr11 90140354 90140405 -31703451 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1272 243 261 0 0 chr11 90140895 90140964 -31702892 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 2 1272 412 111 95 0 chr11 90140971 90141034 -31702822 - B1_Mur4 SINE Alu -79 71 3 2 1272 301 151 0 54 chr11 90140984 90141040 -31702816 - ID_B1 SINE B4 -92 132 80 2 1272 250 230 167 33 chr11 90141034 90141059 -31702797 - MT2B2 LTR ERVL -352 230 131 2 1272 1142 70 0 0 chr11 90141073 90141216 -31702640 - B1_Mus2 SINE Alu -3 144 2 2 1272 630 220 0 0 chr11 90141272 90141449 -31702407 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 1272 255 170 0 0 chr11 90141462 90141509 -31702347 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1272 23 54 0 0 chr11 90143222 90143259 -31700597 + AT_rich Low_complexity Low_complexity 1 37 0 2 1272 1391 87 27 5 chr11 90143391 90143577 -31700279 - B2_Mm2 SINE B2 -4 191 2 2 1272 313 235 51 30 chr11 90143623 90143793 -31700063 + B3A SINE B2 1 216 0 2 1272 553 350 0 0 chr11 90143875 90144018 -31699838 + RSINE1 SINE B4 5 147 -18 2 1272 360 0 0 0 chr11 90144022 90144062 -31699794 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1272 950 202 53 19 chr11 90144316 90144523 -31699333 - B3 SINE B2 -2 214 1 2 1272 551 40 0 13 chr11 90144766 90144841 -31699015 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1272 225 0 0 0 chr11 90144841 90144865 -31698991 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1272 674 272 41 17 chr11 90145744 90145916 -31697940 + B3A SINE B2 1 176 -22 2 1272 218 344 70 23 chr11 90146227 90146355 -31697501 - MIRm SINE MIR -3 273 140 2 1272 320 338 102 43 chr11 90146794 90147029 -31696827 - L2b LINE L2 -60 3315 3067 2 1272 189 351 13 25 chr11 90147140 90147219 -31696637 - MIR SINE MIR 0 262 185 2 1272 1499 68 16 0 chr11 90147517 90147708 -31696148 + B2_Mm2 SINE B2 2 195 0 2 1272 283 352 209 6 chr11 90147834 90148154 -31695702 - L2a LINE L2 -4 3422 3038 2 1272 478 228 24 31 chr11 90148338 90148465 -31695391 + MER31B LTR ERV1 246 371 -95 2 1272 209 308 15 0 chr11 90148818 90148883 -31694973 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1272 1076 273 54 22 chr11 90148886 90149163 -31694693 - B4A SINE B4 -1 291 6 2 1272 190 275 0 0 chr11 90149669 90149709 -31694147 + L2b LINE L2 3313 3352 -23 2 1272 643 137 194 0 chr11 90149959 90150083 -31693773 + B1_Mur2 SINE Alu 2 149 0 2 1272 768 316 28 59 chr11 90150191 90150477 -31693379 - B4A SINE B4 -8 284 8 2 1272 225 357 113 52 chr11 90150769 90150822 -31693034 + L2c LINE L2 2437 2487 -932 2 1272 879 37 0 0 chr11 90150822 90150929 -31692927 + (TCTCCC)n Simple_repeat Simple_repeat 6 112 0 2 1272 1111 72 0 0 chr11 90150929 90151067 -31692789 - B1_Mus1 SINE Alu -10 138 1 2 1272 225 357 113 52 chr11 90151067 90151322 -31692534 + L2c LINE L2 2488 2764 -655 2 1272 235 306 106 101 chr11 90151508 90151726 -31692130 + L2c LINE L2 3006 3224 -163 2 1272 201 74 0 0 chr11 90153377 90153404 -31690452 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1272 1094 97 7 0 chr11 90153412 90153556 -31690300 - B1_Mus1 SINE Alu -2 146 2 2 1272 223 243 65 134 chr11 90153996 90154147 -31689709 - L2b LINE L2 -57 3369 3240 2 1272 290 338 116 17 chr11 90154267 90154499 -31689357 + MLT1L LTR MaLR 342 596 -14 2 1272 299 303 106 8 chr11 90154793 90154916 -31688940 - MIRc SINE MIR -27 241 107 2 1272 312 329 123 71 chr11 90155226 90155494 -31688362 + B4 SINE B4 5 286 -6 2 1272 228 159 22 22 chr11 90155532 90155577 -31688279 - MLT2B3 LTR ERVL 0 554 510 2 1272 495 333 16 53 chr11 90155596 90155840 -31688016 - MT2A LTR ERVL -132 401 167 3 1272 763 256 68 15 chr11 90156077 90156343 -31687513 - L1MC3 LINE L1 -32 7753 7474 3 1272 240 35 0 0 chr11 90156346 90156375 -31687481 + (CTG)n Simple_repeat Simple_repeat 1 29 0 3 1272 793 152 22 27 chr11 90156377 90156826 -31687030 + (TG)n Simple_repeat Simple_repeat 1 447 0 3 1272 1171 271 100 6 chr11 90156826 90157327 -31686529 - L1MC3 LINE L1 -340 7445 6898 3 1272 426 351 42 18 chr11 90158749 90158917 -31684939 - MER5A DNA MER1_type -12 177 6 3 1272 279 393 20 24 chr11 90159033 90159283 -31684573 - L2 LINE L2 -935 2484 2236 3 1272 542 347 58 25 chr11 90159307 90159585 -31684271 + B4A SINE B4 5 291 -1 3 1272 1138 279 0 0 chr11 90160268 90160512 -31683344 + B4A SINE B4 2 245 -47 3 1272 215 283 0 0 chr11 90160784 90160830 -31683026 + G-rich Low_complexity Low_complexity 1 46 0 3 1272 212 254 14 27 chr11 90160832 90160905 -31682951 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1272 728 180 229 6 chr11 90161190 90161369 -31682487 - URR1B DNA MER1_type -4 221 3 3 1272 832 298 114 0 chr11 90161986 90162241 -31681615 + B4A SINE B4 9 292 0 3 1272 359 98 0 16 chr11 90162249 90162311 -31681545 + (CATA)n Simple_repeat Simple_repeat 4 64 0 3 1272 958 279 74 42 chr11 90162491 90162828 -31681028 + MLT1A0 LTR MaLR 5 352 -13 3 1272 249 278 0 0 chr11 90162871 90162925 -31680931 + L2 LINE L2 558 611 -2808 3 1272 459 0 0 0 chr11 90163170 90163221 -31680635 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1272 479 17 17 0 chr11 90163221 90163280 -31680576 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1272 586 162 6 6 chr11 90163280 90163441 -31680415 + (CA)n Simple_repeat Simple_repeat 1 161 0 3 1272 352 78 0 19 chr11 90163441 90163468 -31680388 + HAL1-3A_ME LINE L1 1977 2003 -855 3 1272 194 0 39 0 chr11 90163468 90163494 -31680362 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1272 352 78 0 19 chr11 90163494 90163518 -31680338 + HAL1-3A_ME LINE L1 2004 2026 -832 3 1272 915 106 0 27 chr11 90163538 90163723 -31680133 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1272 200 265 139 30 chr11 90164132 90164233 -31679623 - L3 LINE CR1 -1226 3263 3152 3 1272 501 288 44 29 chr11 90164301 90164505 -31679351 - L1MB7 LINE L1 -109 6935 6729 3 1272 378 0 0 0 chr11 90164517 90164559 -31679297 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1272 625 234 13 40 chr11 90164571 90164610 -31679246 - RSINE1 SINE B4 -15 150 116 3 1272 3248 46 2 10 chr11 90164610 90165009 -31678847 + MTA_Mm LTR MaLR 1 396 0 3 1272 625 234 13 40 chr11 90165009 90165120 -31678736 - RSINE1 SINE B4 -50 115 4 3 1272 701 253 110 26 chr11 90165690 90165954 -31677902 - L1MB7 LINE L1 -354 6690 6405 3 1272 1013 311 72 26 chr11 90166069 90166678 -31677178 - L1MB7 LINE L1 -5221 2113 1427 3 1272 246 32 0 0 chr11 90166678 90166709 -31677147 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1272 1013 310 53 27 chr11 90166709 90166917 -31676939 - L1MB7 LINE L1 -5908 1426 1205 3 1272 2297 34 11 2 chr11 90167113 90167418 -31676438 - IAPEY2_LTR LTR ERVK 0 357 1 3 1272 1037 121 137 34 chr11 90167924 90168129 -31675727 - URR1A DNA MER1_type 0 226 1 3 1272 185 326 55 22 chr11 90168268 90168359 -31675497 + MIR SINE MIR 17 110 -152 3 1272 195 129 0 0 chr11 90169134 90169165 -31674691 + (TTC)n Simple_repeat Simple_repeat 2 32 0 3 1272 1551 53 0 0 chr11 90169202 90169392 -31674464 - L1_Mus1 LINE L1 -1 6566 6377 3 1272 3243 62 2 12 chr11 90169964 90170375 -31673481 - MTB_Mm LTR MaLR 0 407 1 3 1272 2335 176 155 32 chr11 90170583 90171112 -31672744 + RMER19B LTR ERVK 309 902 0 3 1272 196 73 98 0 chr11 90171122 90171163 -31672693 + (CATG)n Simple_repeat Simple_repeat 1 45 0 3 1272 279 0 0 0 chr11 90171179 90171210 -31672646 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1272 2841 30 0 45 chr11 90171699 90172052 -31671804 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1272 1436 0 0 0 chr11 90172052 90172204 -31671652 - IAPEz-int LTR ERVK 0 6481 6330 3 1272 8972 51 89 31 chr11 90172192 90173412 -31670444 - IAPEz-int LTR ERVK -5183 1298 8 3 1272 2841 30 0 45 chr11 90173412 90173765 -31670091 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1272 423 287 52 0 chr11 90174046 90174161 -31669695 + RSINE1 SINE B4 13 133 -32 3 1272 307 316 25 0 chr11 90174357 90174436 -31669420 + ID4_ SINE ID 3 83 0 3 1272 228 259 19 0 chr11 90174458 90174512 -31669344 + MTEa LTR MaLR 324 378 -1 3 1272 320 302 41 20 chr11 90174512 90174601 -31669255 - PB1D10 SINE Alu -58 91 1 3 1272 475 234 6 6 chr11 90174737 90174909 -31668947 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 1272 339 183 49 88 chr11 90174911 90175013 -31668843 - L1M4 LINE L1 -5013 1529 1432 3 1272 189 74 0 0 chr11 90175274 90175301 -31668555 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1272 1275 307 118 16 chr11 90175301 90175851 -31668005 - L1M4 LINE L1 -5488 1054 449 3 1272 1728 263 77 33 chr11 90175852 90176380 -31667476 + Lx9 LINE L1 6975 7517 -127 3 1272 261 0 0 0 chr11 90176380 90176409 -31667447 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1272 1728 263 77 33 chr11 90176409 90176514 -31667342 + Lx9 LINE L1 7518 7636 -8 3 1272 569 281 144 33 chr11 90176538 90176982 -31666874 + L1MA4A LINE L1 5367 5936 -367 3 1272 973 153 9 4 chr11 90177183 90177412 -31666444 + (TCCA)n Simple_repeat Simple_repeat 1 230 0 3 19 1176 101 0 0 chr11 90177412 90177590 -31666266 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 3 1273 1319 281 13 41 chr11 90177981 90178371 -31665485 - MTE2b LTR MaLR 0 379 1 3 1273 194 343 0 89 chr11 90179311 90179423 -31664433 + MIRc SINE MIR 55 156 -112 3 1273 2066 180 10 17 chr11 90179546 90179952 -31663904 - MTC LTR MaLR -1 420 18 3 1273 241 333 32 40 chr11 90180185 90180310 -31663546 - L4 LINE RTE -213 1816 1693 3 1273 630 288 43 65 chr11 90181798 90182121 -31661735 - MLT1C LTR MaLR -99 368 53 3 1273 267 127 48 0 chr11 90182593 90182656 -31661200 + CT-rich Low_complexity Low_complexity 1 66 0 3 1273 254 244 0 12 chr11 90183163 90183246 -31660610 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1273 839 303 71 30 chr11 90183331 90183357 -31660499 + B4 SINE B4 10 36 -256 3 1273 3029 53 55 0 chr11 90183357 90183736 -31660120 + MTB LTR MaLR 1 400 0 3 1273 839 303 71 30 chr11 90183736 90183978 -31659878 + B4 SINE B4 37 289 -3 3 1273 1444 299 69 17 chr11 90184297 90184872 -31658984 - Lx8 LINE L1 -10 7463 6857 3 1273 360 255 48 10 chr11 90184872 90184975 -31658881 - PB1D9 SINE Alu -11 109 3 3 1273 1444 299 69 17 chr11 90184975 90184990 -31658866 - Lx8 LINE L1 -617 6856 6843 3 1273 189 327 54 36 chr11 90185181 90185292 -31658564 - L2c LINE L2 -58 3329 3217 3 1273 456 306 82 64 chr11 90185987 90186315 -31657541 + L2a LINE L2 2675 3008 -411 3 1273 231 238 44 111 chr11 90186504 90186594 -31657262 + L2a LINE L2 3336 3419 -7 3 1273 1134 244 26 69 chr11 90186752 90187056 -31656800 + B4A SINE B4 2 292 0 3 1273 219 139 0 0 chr11 90187255 90187291 -31656565 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1273 24 0 0 0 chr11 90187310 90187334 -31656522 + AT_rich Low_complexity Low_complexity 1 24 0 3 1273 1367 219 123 25 chr11 90188823 90189185 -31654671 + MTD LTR MaLR 16 403 -16 3 1273 446 280 0 9 chr11 90189201 90189309 -31654547 + PB1D10 SINE Alu 10 116 -1 3 1273 501 17 0 0 chr11 90189816 90189874 -31653982 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1273 441 326 30 10 chr11 90190351 90190494 -31653362 + MER20 DNA MER1_type 70 218 -1 3 1273 22 0 0 0 chr11 90190792 90190814 -31653042 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 25 0 0 0 chr11 90190871 90190896 -31652960 + AT_rich Low_complexity Low_complexity 1 25 0 3 1273 402 238 10 27 chr11 90190946 90191065 -31652791 - B1F1 SINE Alu -1 119 9 3 1273 899 266 58 8 chr11 90191136 90191379 -31652477 - B4A SINE B4 -8 284 30 3 1273 507 304 0 7 chr11 90191894 90192033 -31651823 + ID_B1 SINE B4 87 224 0 3 1273 393 58 0 0 chr11 90192266 90192318 -31651538 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1273 587 374 5 46 chr11 90192327 90192395 -31651461 - B4 SINE B4 -4 288 224 3 1273 270 0 0 0 chr11 90192395 90192425 -31651431 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 3 1273 587 374 5 46 chr11 90192425 90192572 -31651284 - B4 SINE B4 -69 223 82 3 1273 321 229 0 46 chr11 90192601 90192688 -31651168 - B4 SINE B4 -209 83 1 3 1273 1089 260 111 6 chr11 90195186 90195527 -31648329 - MTE2b LTR MaLR -2 377 1 3 1273 689 102 9 0 chr11 90195579 90195687 -31648169 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 1273 425 360 72 24 chr11 90195714 90196007 -31647849 - ORR1E LTR MaLR -52 307 1 3 1273 441 0 0 0 chr11 90196353 90196402 -31647454 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1273 310 236 128 60 chr11 90196722 90196839 -31647017 + Charlie2a DNA MER1_type 43 167 -2694 3 1273 590 298 92 13 chr11 90196880 90197118 -31646738 + MER2 DNA MER2_type 80 336 -9 3 1273 206 264 27 40 chr11 90197143 90197218 -31646638 - MER5B DNA MER1_type -28 150 77 3 1273 882 203 102 25 chr11 90197371 90197568 -31646288 - B3 SINE B2 -3 213 2 3 1273 180 0 0 0 chr11 90199283 90199303 -31644553 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1273 180 152 0 0 chr11 90201894 90201927 -31641929 + (CATA)n Simple_repeat Simple_repeat 1 33 0 3 1273 536 272 0 0 chr11 90202737 90202840 -31641016 - ID_B1 SINE B4 -7 217 115 3 1273 213 163 0 23 chr11 90203812 90203856 -31640000 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 3 1273 284 319 44 0 chr11 90204001 90204092 -31639764 + LTR85a LTR Gypsy? 1 95 -607 3 1273 216 97 0 0 chr11 90204743 90204774 -31639082 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1273 189 74 0 0 chr11 90207536 90207563 -31636293 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1273 1670 201 19 16 chr11 90207587 90207910 -31635946 + MTD LTR MaLR 1 324 -95 3 1273 685 287 127 52 chr11 90208341 90208609 -31635247 - B4A SINE B4 -3 289 2 3 1273 281 215 15 15 chr11 90208636 90208702 -31635154 - ID4 SINE ID -15 68 3 3 1273 195 340 110 6 chr11 90208811 90208974 -31634882 - L2 LINE L2 -547 2872 2693 3 1273 396 0 0 0 chr11 90209816 90209860 -31633996 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1273 915 264 83 94 chr11 90209926 90210469 -31633387 + Lx9 LINE L1 7077 7613 -31 3 1273 207 182 0 0 chr11 90210479 90210512 -31633344 + (TATG)n Simple_repeat Simple_repeat 1 33 0 3 1273 588 291 0 29 chr11 90210621 90210759 -31633097 - RSINE1 SINE B4 -29 136 3 4 1273 1318 64 58 0 chr11 90211115 90211286 -31632570 - B2_Mm2 SINE B2 -14 181 1 4 1273 352 101 21 63 chr11 90212040 90212135 -31631721 - Lx4A LINE L1 -1 7057 6967 4 1273 1854 124 45 16 chr11 90212170 90212481 -31631375 + Lx4A LINE L1 5963 6282 -776 4 1273 778 209 187 0 chr11 90213140 90213322 -31630534 + B3 SINE B2 1 216 0 4 1273 464 324 100 32 chr11 90213851 90214192 -31629664 + MLT1H LTR MaLR 21 384 -165 4 1273 387 0 0 0 chr11 90214545 90214588 -31629268 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1273 188 103 51 0 chr11 90214612 90214651 -31629205 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 1273 236 269 75 98 chr11 90214882 90215055 -31628801 + L2 LINE L2 2683 2851 -568 4 1273 268 345 0 0 chr11 90215494 90215578 -31628278 - MIR SINE MIR -71 191 108 4 1273 207 0 0 0 chr11 90217852 90217875 -31625981 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1273 986 39 138 0 chr11 90220393 90220523 -31623333 + B1_Mus1 SINE Alu 1 148 0 4 1273 297 289 44 0 chr11 90220566 90220680 -31623176 + PB1D7 SINE Alu 2 120 0 4 1273 204 125 0 0 chr11 90220680 90220712 -31623144 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1273 181 324 81 0 chr11 90221365 90221439 -31622417 - L3 LINE CR1 -4408 81 2 4 1273 1137 223 68 118 chr11 90222465 90222846 -31621010 + MTE2a LTR MaLR 9 370 -9 4 1273 475 254 28 42 chr11 90222894 90223038 -31620818 + B1F SINE Alu 1 142 -7 4 1273 241 279 0 42 chr11 90223053 90223124 -31620732 + ID4_ SINE ID 4 71 -12 4 1273 202 214 0 0 chr11 90223126 90223168 -31620688 + GA-rich Low_complexity Low_complexity 1 42 0 4 1273 375 194 19 10 chr11 90223170 90223274 -31620582 + G-rich Low_complexity Low_complexity 2 106 0 4 1273 285 146 22 22 chr11 90223347 90223438 -31620418 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 4 1273 234 275 244 0 chr11 90224399 90224530 -31619326 + L1MC LINE L1 5730 5892 -1990 4 1273 227 253 12 37 chr11 90224547 90224629 -31619227 + (CATA)n Simple_repeat Simple_repeat 3 82 0 4 1273 208 292 86 148 chr11 90227337 90227546 -31616310 + MIRb SINE MIR 65 260 -8 4 1273 196 216 57 38 chr11 90227547 90227600 -31616256 - L4 LINE RTE -1357 672 619 4 1273 22 0 0 0 chr11 90228098 90228120 -31615736 + AT_rich Low_complexity Low_complexity 1 22 0 4 1273 218 360 55 22 chr11 90228583 90228674 -31615182 - B4A SINE B4 -180 112 19 4 1273 180 0 0 0 chr11 90229498 90229518 -31614338 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1273 298 262 59 12 chr11 90233379 90233464 -31610392 - MER117 DNA MER1_type -51 146 58 4 1273 199 249 20 17 chr11 90234291 90234336 -31609520 - MIR SINE MIR -114 154 106 4 1273 2258 136 67 8 chr11 90234336 90234708 -31609148 + ORR1B1 LTR MaLR 1 394 0 4 1273 851 194 19 6 chr11 90235394 90235550 -31608306 + URR1B DNA MER1_type 68 225 0 4 1273 406 353 100 0 chr11 90235640 90235830 -31608026 + B4A SINE B4 13 221 -71 4 1273 695 330 108 71 chr11 90235865 90236357 -31607499 + Lx5 LINE L1 6506 7015 -35 4 1273 180 0 0 0 chr11 90236383 90236403 -31607453 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1273 681 294 82 19 chr11 90237838 90238105 -31605751 + B4A SINE B4 9 292 0 4 1273 1267 21 7 0 chr11 90238420 90238565 -31605291 + B1_Mm SINE Alu 2 147 0 4 1273 183 42 0 0 chr11 90238568 90238592 -31605264 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1273 361 267 52 133 chr11 90238879 90239052 -31604804 + RSINE1 SINE B4 7 165 0 4 1273 339 25 0 0 chr11 90239573 90239613 -31604243 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1273 1257 83 0 0 chr11 90240713 90240893 -31602963 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1273 283 385 25 40 chr11 90242577 90242777 -31601079 - MIRb SINE MIR -22 246 50 4 1273 233 219 141 30 chr11 90243173 90243272 -31600584 + Tigger16a DNA Tigger 352 461 -472 4 1273 200 213 16 0 chr11 90243693 90243754 -31600102 + G-rich Low_complexity Low_complexity 4 65 0 4 1273 308 267 11 43 chr11 90244218 90244312 -31599544 - MIRb SINE MIR -68 200 110 4 1273 1451 53 26 21 chr11 90244324 90244517 -31599339 + B2_Mm2 SINE B2 1 194 -1 4 1273 611 60 0 12 chr11 90244778 90244863 -31598993 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1273 306 0 0 0 chr11 90245381 90245415 -31598441 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1273 411 304 75 0 chr11 90246339 90246540 -31597316 + MER20 DNA MER1_type 1 216 -3 4 1273 199 311 110 28 chr11 90247316 90247425 -31596431 - MIRb SINE MIR -66 202 85 4 1273 495 248 28 0 chr11 90248204 90248313 -31595543 - B4A SINE B4 -109 183 72 4 1273 564 194 0 0 chr11 90248470 90248599 -31595257 + GA-rich Low_complexity Low_complexity 2 130 0 4 1273 283 302 76 35 chr11 90248797 90248941 -31594915 + MER5A DNA MER1_type 8 157 -32 4 1273 210 37 0 0 chr11 90251854 90251881 -31591975 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1273 24 91 0 0 chr11 90252124 90252190 -31591666 + GC_rich Low_complexity Low_complexity 1 66 0 4 1273 331 233 82 72 chr11 90252581 90252678 -31591178 + MER5B DNA MER1_type 46 143 -35 4 1273 221 349 12 12 chr11 90253333 90253417 -31590439 - ID SINE ID -139 85 2 4 1273 212 254 29 15 chr11 90253791 90253859 -31589997 - L2b LINE L2 -17 3358 3290 4 1273 219 244 24 82 chr11 90254061 90254146 -31589710 + B3A SINE B2 1 80 -118 4 1273 684 201 14 21 chr11 90254176 90254318 -31589538 + B4A SINE B4 88 228 -64 4 1273 369 0 0 0 chr11 90254331 90254372 -31589484 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1273 3811 32 0 0 chr11 90254449 90254887 -31588969 - L1Md_T LINE L1 -1 6581 6144 4 1273 355 270 70 88 chr11 90255285 90255500 -31588356 - Lx9 LINE L1 -429 7215 7005 4 1273 387 192 0 0 chr11 90255733 90255811 -31588045 + CT-rich Low_complexity Low_complexity 1 78 0 4 1273 412 308 164 0 chr11 90255874 90256033 -31587823 - MLT1H2 LTR MaLR -304 185 1 4 1273 751 159 7 7 chr11 90257211 90257363 -31586493 + GA-rich Low_complexity Low_complexity 1 152 0 4 1273 195 114 0 0 chr11 90257511 90257546 -31586310 + (GGA)n Simple_repeat Simple_repeat 1 35 0 4 1273 236 314 48 62 chr11 90257648 90257794 -31586062 - MIRb SINE MIR -105 163 20 4 1273 480 190 25 12 chr11 90259541 90259701 -31584155 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 1273 187 215 15 15 chr11 90259734 90259800 -31584056 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1273 465 296 124 38 chr11 90259802 90260069 -31583787 - B4A SINE B4 0 292 3 4 1273 651 147 0 0 chr11 90260913 90261029 -31582827 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 1273 348 256 154 0 chr11 90261029 90261107 -31582749 - B3 SINE B2 -78 138 49 4 1273 1048 93 202 6 chr11 90261102 90261285 -31582571 + URR1A DNA MER1_type 7 225 -1 4 1273 213 39 0 0 chr11 90262338 90262364 -31581492 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1273 398 198 24 145 chr11 90262410 90262534 -31581322 - B4A SINE B4 -56 109 1 4 1273 362 345 66 38 chr11 90262596 90262807 -31581049 - MER63B DNA AcHobo -18 418 202 4 1273 262 291 69 30 chr11 90263004 90263135 -31580721 - MER63B DNA AcHobo -271 165 30 4 1273 410 53 25 50 chr11 90263218 90263298 -31580558 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1273 934 332 21 18 chr11 90263315 90263600 -31580256 - B4 SINE B4 0 292 7 4 1273 202 241 0 18 chr11 90263600 90263655 -31580201 + CT-rich Low_complexity Low_complexity 2 55 0 4 1273 823 149 0 13 chr11 90265259 90265415 -31578441 + CT-rich Low_complexity Low_complexity 3 156 0 4 1273 259 329 89 51 chr11 90265621 90265778 -31578078 - MLT1J LTR MaLR -243 269 107 4 1273 202 365 24 0 chr11 90265841 90265926 -31577930 - L2 LINE L2 -556 2863 2777 4 1273 185 340 0 0 chr11 90265962 90266015 -31577841 - L2 LINE L2 -739 2680 2628 4 1273 239 392 39 13 chr11 90266184 90266339 -31577517 + L2a LINE L2 3229 3387 -39 4 1273 528 288 68 0 chr11 90266414 90266546 -31577310 + ID_B1 SINE B4 83 223 -1 4 1273 623 250 225 5 chr11 90267185 90267384 -31576472 + MTE2b LTR MaLR 9 251 -128 4 1273 360 0 0 0 chr11 90267417 90267457 -31576399 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1273 442 293 128 58 chr11 90268066 90268323 -31575533 + RMER15 LTR ERVL 296 570 -5 4 1273 524 328 97 16 chr11 90268540 90268797 -31575059 - B4A SINE B4 -14 278 1 4 1273 419 283 0 0 chr11 90269608 90269700 -31574156 - PB1D10 SINE Alu -19 98 7 4 1273 3182 144 22 31 chr11 90271266 90271766 -31572090 + RMER4B LTR ERVK 18 510 -75 4 1273 2362 61 105 0 chr11 90271766 90272079 -31571777 + ORR1A1 LTR MaLR 1 346 0 4 1273 13237 65 33 6 chr11 90272079 90273824 -31570032 + ORR1A1-int LTR MaLR 1 1792 0 4 1273 2960 43 3 0 chr11 90273824 90274169 -31569687 + ORR1A1 LTR MaLR 1 346 0 4 1273 3182 144 22 31 chr11 90274169 90274217 -31569639 + RMER4B LTR ERVK 511 561 -24 4 1273 1593 245 113 27 chr11 90275072 90275516 -31568340 - RMER15 LTR ERVL -2 573 92 4 1273 536 322 19 14 chr11 90276080 90276294 -31567562 + L1MB1 LINE L1 5729 5943 -225 4 1273 28 61 0 0 chr11 90276449 90276498 -31567358 + AT_rich Low_complexity Low_complexity 1 49 0 4 1273 615 231 23 15 chr11 90276759 90276891 -31566965 - B1_Mur4 SINE Alu -2 148 16 4 1273 1146 82 7 0 chr11 90277298 90277445 -31566411 - B1_Mus1 SINE Alu 0 148 1 4 1273 912 65 0 0 chr11 90277995 90278118 -31565738 + B1_Mus1 SINE Alu 1 123 -25 4 1273 211 351 13 0 chr11 90278118 90278195 -31565661 + BC1_Mm scRNA scRNA 2 79 -73 4 1273 262 137 95 14 chr11 90278661 90278735 -31565121 + Lx4A LINE L1 6976 7055 -3 4 1273 25 65 0 0 chr11 90279304 90279350 -31564506 + GC_rich Low_complexity Low_complexity 1 46 0 4 1273 332 231 97 21 chr11 90279957 90280050 -31563806 - PB1D7 SINE Alu -20 100 1 5 1273 742 250 5 64 chr11 90281915 90282103 -31561753 + MTEa LTR MaLR 3 179 -200 5 1273 275 257 0 10 chr11 90282130 90282232 -31561624 + G-rich Low_complexity Low_complexity 4 104 0 5 1273 481 263 79 21 chr11 90282238 90282378 -31561478 + MTEa LTR MaLR 168 315 -64 5 1273 222 143 0 0 chr11 90282384 90282433 -31561423 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 5 1273 571 217 115 120 chr11 90282441 90282650 -31561206 - B4A SINE B4 -1 291 84 5 1273 1200 62 0 0 chr11 90282666 90282811 -31561045 + B1_Mm SINE Alu 3 147 0 5 1273 981 203 17 78 chr11 90282841 90283071 -31560785 - B3 SINE B2 0 216 1 5 1273 281 286 22 0 chr11 90283252 90283343 -31560513 - MLT1I LTR MaLR 0 411 319 5 1273 420 20 0 0 chr11 90284224 90284273 -31559583 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1273 201 250 0 19 chr11 90284273 90284315 -31559541 + polypurine Low_complexity Low_complexity 14 55 0 5 1273 395 289 64 78 chr11 90284935 90285028 -31558828 + MER20 DNA MER1_type 1 92 -127 5 1273 2132 150 75 21 chr11 90285028 90285402 -31558454 - ORR1B1 LTR MaLR 0 394 1 5 1273 395 289 64 78 chr11 90285402 90285526 -31558330 + MER20 DNA MER1_type 93 215 -4 5 1273 614 284 38 5 chr11 90286289 90286473 -31557383 - B3 SINE B2 -11 205 16 5 1273 32 43 0 0 chr11 90288755 90288801 -31555055 + AT_rich Low_complexity Low_complexity 1 46 0 5 1273 504 0 0 0 chr11 90289027 90289083 -31554773 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1273 1764 158 65 14 chr11 90289127 90289481 -31554375 + ORR1C2 LTR MaLR 7 378 -6 5 1273 2117 107 91 3 chr11 90289814 90290132 -31553724 + ORR1A1 LTR MaLR 1 346 0 5 1273 1155 64 0 0 chr11 90290407 90290547 -31553309 - B1_Mus1 SINE Alu -8 140 1 5 1273 3415 28 10 0 chr11 90290616 90291008 -31552848 + MTA_Mm LTR MaLR 1 396 0 5 1273 324 258 31 0 chr11 90291149 90291259 -31552597 + PB1D7 SINE Alu 1 120 0 5 1273 204 267 0 0 chr11 90291411 90291456 -31552400 + G-rich Low_complexity Low_complexity 5 49 0 5 1273 444 37 0 0 chr11 90291639 90291693 -31552163 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1273 255 174 75 11 chr11 90291747 90291840 -31552016 + (TATATG)n Simple_repeat Simple_repeat 2 100 0 5 1273 558 0 0 0 chr11 90292628 90292690 -31551166 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 5 1273 196 343 78 7 chr11 90293450 90293591 -31550265 - L2a LINE L2 -12 3414 3264 5 1273 684 333 22 47 chr11 90293594 90293871 -31549985 + B4 SINE B4 3 272 -20 5 1273 324 0 0 0 chr11 90293872 90293908 -31549948 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1273 270 0 0 0 chr11 90293908 90293937 -31549919 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1273 431 305 56 62 chr11 90294894 90295072 -31548784 - MLT1J2 LTR MaLR -208 240 64 5 1273 243 0 0 0 chr11 90295101 90295128 -31548728 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1273 1997 138 9 58 chr11 90295769 90296115 -31547741 - ORR1A4 LTR MaLR 0 329 1 5 1273 207 0 0 0 chr11 90296494 90296517 -31547339 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1273 416 299 83 45 chr11 90296604 90296736 -31547120 + PB1D10 SINE Alu 6 143 -5 5 1273 1997 133 62 9 chr11 90299238 90299579 -31544277 + RLTR15 LTR ERVK 1 359 0 5 1273 233 299 30 78 chr11 90299995 90300162 -31543694 + MamGypLTR2b LTR Gypsy 744 902 -20 5 1273 228 237 11 146 chr11 90300276 90300365 -31543491 - ID4_ SINE ID -4 79 3 5 1273 1163 105 76 16 chr11 90301223 90301407 -31542449 - B2_Mm2 SINE B2 0 195 1 5 1273 242 208 0 0 chr11 90302661 90302709 -31541147 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1273 255 265 120 15 chr11 90303644 90303851 -31540005 + RMER20A LTR ERVK 134 356 -271 5 1273 801 268 94 22 chr11 90305154 90305421 -31538435 - B4A SINE B4 0 292 7 5 1273 548 150 33 10 chr11 90305789 90305900 -31537956 + B3 SINE B2 2 124 -71 5 1273 467 154 29 29 chr11 90306515 90306689 -31537167 + (TA)n Simple_repeat Simple_repeat 1 174 0 5 1273 21 0 0 0 chr11 90306723 90306744 -31537112 + AT_rich Low_complexity Low_complexity 1 21 0 5 1273 185 159 0 22 chr11 90306921 90306966 -31536890 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1273 186 43 0 0 chr11 90307096 90307119 -31536737 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 5 1273 414 0 0 0 chr11 90307136 90307182 -31536674 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1273 407 316 4 3 chr11 90307191 90307341 -31536515 - L1MA5 LINE L1 -460 5840 5706 5 1273 293 206 29 0 chr11 90307402 90307470 -31536386 - ID4 SINE ID -12 71 2 5 1273 259 224 0 95 chr11 90308331 90308405 -31535451 - ORR1E LTR MaLR -240 119 53 5 1274 280 122 61 0 chr11 90308796 90308845 -31535011 + RLTR40 LTR ERVK 1 52 -765 5 1274 837 315 126 57 chr11 90308898 90309373 -31534483 + MTE-int LTR MaLR 1033 1540 -40 5 1274 390 314 18 37 chr11 90309389 90309498 -31534358 - PB1D10 SINE Alu -10 107 1 5 1274 231 103 0 0 chr11 90309550 90309589 -31534267 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1274 297 0 0 0 chr11 90309591 90309624 -31534232 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1274 246 176 0 0 chr11 90310073 90310124 -31533732 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1274 311 316 87 81 chr11 90310164 90310657 -31533199 + L1MEg LINE L1 705 1200 -4884 5 1274 417 54 0 0 chr11 90310658 90310714 -31533142 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1274 371 181 419 39 chr11 90311440 90311595 -31532261 - B3 SINE B2 -1 215 2 5 1274 185 93 55 18 chr11 90312342 90312397 -31531459 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1274 21 36 0 0 chr11 90313192 90313220 -31530636 + AT_rich Low_complexity Low_complexity 1 28 0 5 1274 350 69 17 0 chr11 90313425 90313483 -31530373 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 5 1274 243 0 0 0 chr11 90313813 90313840 -31530016 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1274 507 33 0 0 chr11 90313840 90313900 -31529956 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1274 233 345 46 46 chr11 90316373 90316546 -31527310 - MER5B DNA MER1_type -1 177 5 5 1274 1014 107 0 0 chr11 90316844 90316994 -31526862 + (CCCA)n Simple_repeat Simple_repeat 2 151 0 5 1274 296 282 116 33 chr11 90316997 90317118 -31526738 - L2c LINE L2 0 3387 3257 5 1274 463 266 54 72 chr11 90317149 90317315 -31526541 + RSINE1 SINE B4 3 165 0 5 1274 414 119 40 0 chr11 90317340 90317441 -31526415 + (CAGAGA)n Simple_repeat Simple_repeat 6 110 0 5 1274 282 164 42 56 chr11 90317616 90317687 -31526169 - MER34 LTR ERV1 -97 445 376 5 1274 243 232 101 72 chr11 90317883 90318022 -31525834 - MER34 LTR ERV1 -333 209 67 5 1274 5886 22 13 0 chr11 90318292 90318965 -31524891 + L1Md_F2 LINE L1 5893 6574 -8 5 1274 330 353 298 20 chr11 90319054 90319356 -31524500 + MER21B LTR ERV1 27 412 -451 5 1274 549 313 78 30 chr11 90320318 90320588 -31523268 + B4A SINE B4 1 283 -9 5 1274 612 116 0 0 chr11 90320588 90320683 -31523173 + (TA)n Simple_repeat Simple_repeat 1 95 0 5 1274 432 0 0 0 chr11 90320683 90320730 -31523126 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1274 459 186 0 0 chr11 90321295 90321392 -31522464 + CT-rich Low_complexity Low_complexity 4 100 0 5 1274 1217 90 6 0 chr11 90321393 90321570 -31522286 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 5 1274 748 259 36 26 chr11 90321761 90321955 -31521901 - ID_B1 SINE B4 -26 198 3 5 1274 225 351 78 9 chr11 90321980 90322095 -31521761 + L2b LINE L2 3244 3366 -9 5 1274 228 303 15 76 chr11 90322478 90322610 -31521246 - ORR1C1 LTR MaLR -254 124 1 5 1274 1660 170 15 68 chr11 90323487 90323827 -31520029 + Lx5 LINE L1 6729 7050 0 5 1274 283 279 84 28 chr11 90324855 90324962 -31518894 + MIRb SINE MIR 123 235 -33 5 1274 406 239 86 26 chr11 90325981 90326097 -31517759 + B4A SINE B4 1 123 -169 5 1274 288 0 0 0 chr11 90326451 90326483 -31517373 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1274 223 180 32 16 chr11 90326547 90326609 -31517247 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1274 710 121 0 8 chr11 90326631 90326748 -31517108 + (TTCC)n Simple_repeat Simple_repeat 2 117 0 5 1274 1076 271 32 14 chr11 90328064 90328349 -31515507 + B4A SINE B4 1 290 -2 5 1274 239 143 0 39 chr11 90328370 90328421 -31515435 + (CATA)n Simple_repeat Simple_repeat 4 52 0 5 1274 894 286 101 30 chr11 90328620 90329046 -31514810 - MLT2B3 LTR ERVL -39 515 60 5 1274 225 0 0 0 chr11 90329046 90329071 -31514785 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1274 291 247 36 13 chr11 90330594 90330704 -31513152 - B3A SINE B2 -2 214 102 5 1274 318 218 12 60 chr11 90330706 90330789 -31513067 - RSINE1 SINE B4 -21 144 66 5 1274 596 308 41 15 chr11 90331108 90331444 -31512412 + L1MD LINE L1 5237 5579 -600 5 1274 273 57 0 0 chr11 90331444 90331479 -31512377 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 5 1274 596 334 32 18 chr11 90331479 90331502 -31512354 + L1MD LINE L1 5580 5601 -578 5 1274 773 285 92 61 chr11 90331524 90331969 -31511887 + MLT1D LTR MaLR 44 502 -3 5 1274 236 232 71 14 chr11 90331970 90332040 -31511816 + L1MD LINE L1 5612 5685 -674 5 1274 280 295 9 28 chr11 90332083 90332191 -31511665 + L1MD LINE L1 5695 5800 -2195 5 1274 1282 123 16 0 chr11 90334133 90334320 -31509536 + B2_Mm2 SINE B2 2 191 -4 5 1274 523 167 14 21 chr11 90334726 90334867 -31508989 + GA-rich Low_complexity Low_complexity 1 140 0 5 1274 482 324 70 37 chr11 90334919 90335191 -31508665 + B4A SINE B4 1 281 -11 5 1274 467 262 199 2 chr11 90335838 90336060 -31507796 - MLT1A0 LTR MaLR -39 369 56 5 1274 286 276 92 0 chr11 90336853 90336951 -31506905 - L2a LINE L2 -8 3418 3312 5 1274 218 330 94 17 chr11 90336874 90336991 -31506865 - MIRm SINE MIR -27 249 124 6 1274 506 247 39 78 chr11 90337099 90337125 -31506731 - B3A SINE B2 -6 192 177 6 1274 489 99 0 0 chr11 90337125 90337206 -31506650 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1274 506 247 39 78 chr11 90337206 90337359 -31506497 - B3A SINE B2 -22 176 20 6 1274 387 200 83 10 chr11 90337567 90337663 -31506193 + B4 SINE B4 103 205 -87 6 1274 471 35 0 0 chr11 90337698 90337755 -31506101 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1274 258 56 0 0 chr11 90338355 90338391 -31505465 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1274 243 91 0 0 chr11 90338745 90338803 -31505053 + Lx LINE L1 6610 6654 0 6 1274 372 242 0 0 chr11 90339802 90339893 -31503963 + PB1D10 SINE Alu 23 113 -4 6 1274 234 0 0 0 chr11 90340879 90340905 -31502951 + (TGG)n Simple_repeat Simple_repeat 2 27 0 6 1274 1274 34 0 0 chr11 90341238 90341386 -31502470 - B1_Mus1 SINE Alu 0 148 1 6 1274 800 20 0 10 chr11 90342927 90343026 -31500830 + (CA)n Simple_repeat Simple_repeat 2 99 0 6 1274 191 167 24 0 chr11 90343149 90343191 -31500665 + (CAA)n Simple_repeat Simple_repeat 2 44 0 6 1274 258 105 0 0 chr11 90344011 90344049 -31499807 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 1274 568 139 20 0 chr11 90344050 90344151 -31499705 - PB1D9 SINE Alu 0 120 18 6 1274 27 62 0 0 chr11 90344425 90344473 -31499383 + AT_rich Low_complexity Low_complexity 1 48 0 6 1274 21 0 0 0 chr11 90344929 90344950 -31498906 + AT_rich Low_complexity Low_complexity 1 21 0 6 1274 586 224 94 33 chr11 90345817 90345997 -31497859 + B3 SINE B2 1 191 -25 6 1274 441 0 0 0 chr11 90346000 90346049 -31497807 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1274 225 273 32 64 chr11 90347468 90347562 -31496294 + MT2B2 LTR ERVL 150 240 -344 6 1274 517 186 29 0 chr11 90347486 90347588 -31496268 + PB1D10 SINE Alu 6 110 -7 6 1274 209 342 21 11 chr11 90347733 90347827 -31496029 - MIR SINE MIR -59 149 61 6 1274 540 213 0 18 chr11 90348054 90348164 -31495692 + PB1D10 SINE Alu 1 108 -9 6 1274 405 0 0 0 chr11 90348432 90348477 -31495379 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 1274 396 0 0 0 chr11 90348478 90348522 -31495334 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1274 412 252 36 58 chr11 90348548 90348687 -31495169 + MLT1B LTR MaLR 255 390 0 6 1274 1181 75 0 0 chr11 90350297 90350444 -31493412 - B1_Mus2 SINE Alu 0 147 1 6 1274 278 315 147 25 chr11 90350469 90350707 -31493149 + MLT1F LTR MaLR 25 291 -257 6 1274 399 21 0 0 chr11 90353170 90353218 -31490638 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1274 656 56 0 11 chr11 90353343 90353433 -31490423 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 6 1274 1032 147 122 0 chr11 90354976 90355173 -31488683 + URR1A DNA MER1_type 1 221 -5 6 1274 407 239 35 0 chr11 90356731 90356838 -31487018 - B1F SINE Alu -15 134 22 6 1274 326 303 12 50 chr11 90357885 90358045 -31485811 - RSINE1 SINE B4 -4 161 8 6 1274 431 316 85 78 chr11 90358110 90358381 -31485475 + Lx8 LINE L1 6927 7199 -274 6 1274 556 307 63 10 chr11 90359569 90359776 -31484080 + ID_B1 SINE B4 7 224 0 6 1274 1000 62 0 48 chr11 90360153 90360340 -31483516 + (TCCCC)n Simple_repeat Simple_repeat 3 180 0 6 1274 208 200 14 14 chr11 90360343 90360414 -31483442 + CT-rich Low_complexity Low_complexity 4 74 0 6 1274 189 0 0 0 chr11 90360671 90360692 -31483164 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6 1274 336 322 17 0 chr11 90360904 90361019 -31482837 + Lx9 LINE L1 7197 7313 -331 6 1274 267 245 0 0 chr11 90361031 90361084 -31482772 - Lx9 LINE L1 -665 6979 6927 6 1274 246 224 20 0 chr11 90361618 90361667 -31482189 + GA-rich Low_complexity Low_complexity 5 54 0 6 1274 299 263 68 26 chr11 90363400 90363517 -31480339 + L2a LINE L2 3068 3189 -237 6 1274 505 289 0 15 chr11 90363886 90364016 -31479840 - B1F2 SINE Alu -21 128 1 6 1274 7444 57 0 0 chr11 90364360 90365291 -31478565 - L1Md_F2 LINE L1 -1148 4735 3805 6 1274 7168 54 1 0 chr11 90365287 90366157 -31477699 + L1Md_F2 LINE L1 4715 5585 -298 6 1274 8253 49 0 2 chr11 90366158 90367155 -31476701 + L1Md_F2 LINE L1 5587 6581 -1 6 1274 27 29 0 0 chr11 90367336 90367370 -31476486 + AT_rich Low_complexity Low_complexity 1 34 0 6 1274 246 314 0 0 chr11 90367686 90367756 -31476100 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1274 547 260 122 39 chr11 90367785 90367878 -31475978 - B4 SINE B4 -122 170 76 6 1274 2941 118 9 5 chr11 90367878 90368297 -31475559 + MTC LTR MaLR 1 421 0 6 1274 547 260 122 39 chr11 90368297 90368359 -31475497 - B4 SINE B4 -217 75 2 6 1274 3262 30 19 22 chr11 90368947 90369359 -31474497 + IAPLTR2a LTR ERVK 1 411 0 6 1274 1120 73 50 119 chr11 90369360 90369561 -31474295 + IAPEz-int LTR ERVK 9 195 -6286 6 1274 226 267 0 0 chr11 90369569 90369614 -31474242 + RLTR27 LTR ERVK 231 275 -34 6 1274 3543 72 1 16 chr11 90369614 90370192 -31473664 + IAPEz-int LTR ERVK 168 662 -5819 6 1274 2658 68 12 3 chr11 90370192 90370531 -31473325 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1274 6601 61 11 6 chr11 90370524 90371349 -31472507 + IAPEz-int LTR ERVK 5651 6479 -2 6 1274 3315 35 17 19 chr11 90371351 90371763 -31472093 + IAPLTR2a LTR ERVK 1 411 0 6 1274 260 309 121 73 chr11 90372316 90372522 -31471334 - Tigger13a DNA MER2_type -114 657 442 6 1274 249 33 0 0 chr11 90372828 90372858 -31470998 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1274 274 336 123 22 chr11 90372992 90373269 -31470587 + L2a LINE L2 2118 2422 -997 6 1274 405 0 0 0 chr11 90373456 90373501 -31470355 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1274 341 22 22 0 chr11 90373501 90373546 -31470310 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1274 191 355 72 7 chr11 90373593 90373732 -31470124 + L2a LINE L2 3271 3418 -8 6 1274 270 0 0 0 chr11 90374667 90374697 -31469159 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1274 312 149 13 13 chr11 90375498 90375573 -31468283 + Lx6 LINE L1 7378 7452 -8 6 1274 357 159 0 0 chr11 90375592 90375655 -31468201 + (CATA)n Simple_repeat Simple_repeat 2 64 0 6 1274 300 27 0 0 chr11 90375781 90375818 -31468038 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1274 1139 82 0 0 chr11 90376299 90376446 -31467410 + B1_Mus2 SINE Alu 1 147 0 6 1274 22 56 0 0 chr11 90377386 90377422 -31466434 + AT_rich Low_complexity Low_complexity 1 36 0 6 1274 228 339 113 0 chr11 90378880 90379004 -31464852 - MIR SINE MIR -116 146 9 6 1274 234 81 0 0 chr11 90379013 90379050 -31464806 + (CAA)n Simple_repeat Simple_repeat 3 39 0 6 1274 545 268 46 13 chr11 90380811 90380962 -31462894 + MER58A DNA MER1_type 2 157 -67 6 1274 574 302 64 64 chr11 90381318 90381664 -31462192 + MLT1D LTR MaLR 153 498 -7 6 1274 188 289 78 13 chr11 90382457 90382534 -31461322 - L2b LINE L2 -5 3370 3289 6 1274 922 154 115 0 chr11 90384158 90384340 -31459516 - URR1B DNA MER1_type -22 203 1 6 1274 243 170 0 0 chr11 90385042 90385089 -31458767 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1274 383 357 118 18 chr11 90385113 90385341 -31458515 - B4A SINE B4 -9 283 33 6 1274 211 333 17 34 chr11 90386792 90386910 -31456946 + L2b LINE L2 2929 3044 -331 6 1274 28 0 0 0 chr11 90387224 90387252 -31456604 + AT_rich Low_complexity Low_complexity 1 28 0 6 1274 683 277 59 0 chr11 90388135 90388337 -31455519 + B3 SINE B2 2 215 -1 6 1274 21 0 0 0 chr11 90389975 90389996 -31453860 + AT_rich Low_complexity Low_complexity 1 21 0 6 1274 6532 125 64 6 chr11 90390898 90392068 -31451788 + Lx3A LINE L1 5716 6953 -28 6 1274 32 81 0 0 chr11 90392096 90392170 -31451686 + AT_rich Low_complexity Low_complexity 1 74 0 6 1274 840 20 0 0 chr11 90393115 90393213 -31450643 + (TC)n Simple_repeat Simple_repeat 1 98 0 6 1274 428 310 140 85 chr11 90393518 90394026 -31449830 + MLT1H1 LTR MaLR 6 541 -8 6 1274 704 187 209 0 chr11 90394189 90394376 -31449480 + URR1A DNA MER1_type 1 226 0 6 1274 194 286 0 0 chr11 90394645 90394694 -31449162 + MIRm SINE MIR 107 155 -121 6 1274 27 0 0 0 chr11 90394736 90394763 -31449093 + AT_rich Low_complexity Low_complexity 1 27 0 6 1274 21 36 0 0 chr11 90394958 90394986 -31448870 + AT_rich Low_complexity Low_complexity 1 28 0 6 1274 643 344 82 36 chr11 90395119 90395535 -31448321 + MER20B DNA MER1_type 5 439 -344 6 1274 351 323 40 8 chr11 90396125 90396250 -31447606 - B1F SINE Alu -20 129 1 6 1274 239 133 0 22 chr11 90396729 90396775 -31447081 + GA-rich Low_complexity Low_complexity 2 46 0 6 1274 427 248 21 19 chr11 90398394 90398533 -31445323 - PB1D7 SINE Alu 0 149 8 6 1274 191 36 0 35 chr11 90399072 90399101 -31444755 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1274 738 282 15 36 chr11 90399468 90399663 -31444193 - B3A SINE B2 -3 195 5 6 1274 46 33 0 0 chr11 90399742 90399802 -31444054 + AT_rich Low_complexity Low_complexity 1 60 0 6 1274 254 310 14 14 chr11 90400592 90400664 -31443192 - ID4_ SINE ID -10 73 2 6 1274 341 234 0 49 chr11 90400677 90400758 -31443098 - B1F SINE Alu -5 144 68 6 1274 330 211 10 82 chr11 90400758 90400772 -31443084 - ID_B1 SINE B4 -2 219 132 6 1274 242 309 71 29 chr11 90400817 90400887 -31442969 - MER2 DNA MER2_type -2 343 271 6 1274 522 0 0 0 chr11 90400889 90400947 -31442909 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 6 1274 243 267 100 33 chr11 90401111 90401231 -31442625 - MER2 DNA MER2_type -137 208 81 6 1274 307 295 178 0 chr11 90401328 90401457 -31442399 - MER2B DNA MER2_type -176 160 9 6 1274 659 218 69 49 chr11 90402819 90403022 -31440834 + B3 SINE B2 1 207 -9 6 1274 356 200 13 13 chr11 90403066 90403142 -31440714 + B1_Mur2 SINE Alu 23 98 -51 6 1274 411 340 158 36 chr11 90403150 90403656 -31440200 + L1ME3B LINE L1 1164 1731 -4511 6 1274 319 234 91 0 chr11 90403879 90403956 -31439900 + B3 SINE B2 1 84 -132 6 1274 508 329 61 56 chr11 90405413 90405532 -31438324 + L1ME3B LINE L1 5001 5119 -1027 6 1274 1444 179 125 18 chr11 90405532 90405867 -31437989 + ORR1D1 LTR MaLR 1 371 -3 6 1274 1445 79 5 0 chr11 90405868 90406070 -31437786 + L1_Mus2 LINE L1 6364 6566 0 6 1274 508 329 61 56 chr11 90406070 90406308 -31437548 + L1ME3B LINE L1 5120 5361 -785 6 1274 372 289 127 32 chr11 90406325 90406482 -31437374 - MER63A DNA AcHobo -14 196 25 6 1274 381 328 68 23 chr11 90406496 90406849 -31437007 + L1ME3B LINE L1 5401 5769 -471 6 1274 357 276 139 18 chr11 90406920 90407086 -31436770 + L1ME3B LINE L1 5936 6121 -119 6 1274 657 217 148 26 chr11 90407101 90407290 -31436566 - B3A SINE B2 -4 212 1 7 1274 356 266 154 46 chr11 90407435 90407695 -31436161 + B4 SINE B4 1 288 -4 7 1274 407 333 0 33 chr11 90408091 90408243 -31435613 + RSINE1 SINE B4 2 148 -17 7 1274 21 36 0 0 chr11 90408279 90408307 -31435549 + AT_rich Low_complexity Low_complexity 1 28 0 7 1274 297 0 0 0 chr11 90408911 90408944 -31434912 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1274 252 0 0 0 chr11 90408944 90408972 -31434884 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1274 1013 58 2 8 chr11 90408972 90409113 -31434743 - B1_Mm SINE Alu 0 147 8 7 1274 1379 138 28 0 chr11 90409121 90409338 -31434518 - Lx2 LINE L1 0 6997 6775 7 1274 326 23 23 0 chr11 90409445 90409488 -31434368 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1274 239 362 96 10 chr11 90410877 90411075 -31432781 - MIRb SINE MIR -50 218 4 7 1274 493 284 108 109 chr11 90411586 90412072 -31431784 - L2a LINE L2 -323 3103 2617 7 1274 1994 180 71 86 chr11 90412882 90413418 -31430438 + RLTR24 LTR ERV1 2 529 0 7 1274 283 333 83 69 chr11 90413492 90413637 -31430219 - MIR SINE MIR -115 147 1 7 1274 218 176 0 38 chr11 90414844 90414897 -31428959 + A-rich Low_complexity Low_complexity 5 55 0 7 1274 348 312 44 44 chr11 90415760 90415874 -31427982 - B1F SINE Alu -7 142 29 7 1274 250 220 59 35 chr11 90417234 90417319 -31426537 + L1M5 LINE L1 5531 5617 -507 7 1274 562 289 19 12 chr11 90417321 90417482 -31426374 + RSINE1 SINE B4 2 163 -2 7 1274 2309 225 43 26 chr11 90417592 90418242 -31425614 - RMER1C Other Other 0 1342 463 7 1274 258 32 0 0 chr11 90418410 90418441 -31425415 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1274 1864 42 8 0 chr11 90418984 90419225 -31424631 - L1_Mus1 LINE L1 -282 6285 6043 7 1274 2303 29 22 4 chr11 90419225 90419500 -31424356 + L1_Mus1 LINE L1 6281 6560 -7 7 1274 284 238 38 0 chr11 90421280 90421360 -31422496 - L1MD2 LINE L1 -101 6258 6176 7 1274 247 304 140 18 chr11 90421375 90421603 -31422253 + L1MD2 LINE L1 5798 6053 -306 7 1274 32 0 0 0 chr11 90422389 90422421 -31421435 + AT_rich Low_complexity Low_complexity 1 32 0 7 1274 1953 271 66 9 chr11 90422719 90423105 -31420751 + Lx8 LINE L1 6292 6703 -770 7 1274 210 71 0 0 chr11 90423105 90423133 -31420723 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1274 1953 271 66 9 chr11 90423133 90423399 -31420457 + Lx8 LINE L1 6704 6980 -493 7 1274 7843 41 2 0 chr11 90423414 90425111 -31418745 - L1Md_F3 LINE L1 -13 6571 4871 7 1274 944 283 71 21 chr11 90425113 90425449 -31418407 + Lx8 LINE L1 6998 7350 -123 7 1274 24 32 0 0 chr11 90425801 90425832 -31418024 + AT_rich Low_complexity Low_complexity 1 31 0 7 1274 4512 61 32 2 chr11 90425833 90426425 -31417431 - L1_Mus3 LINE L1 -4 6634 6025 7 1274 828 288 123 50 chr11 90426452 90426957 -31416899 + Charlie5 DNA MER1_type 968 1509 -1115 7 1274 346 151 40 27 chr11 90426968 90427043 -31416813 + Charlie5 DNA MER1_type 1718 1793 -831 7 1274 772 217 180 80 chr11 90427320 90427411 -31416445 + Charlie5 DNA MER1_type 2172 2264 -360 7 1274 1067 82 0 0 chr11 90427411 90427545 -31416311 - B1_Mus1 SINE Alu -13 135 2 7 1274 772 217 180 80 chr11 90427545 90427864 -31415992 + Charlie5 DNA MER1_type 2265 2623 -1 7 1274 194 292 101 98 chr11 90428121 90428459 -31415397 - L2 LINE L2 -410 3009 2671 7 1274 325 333 131 50 chr11 90429119 90429340 -31414516 - MIRb SINE MIR -20 248 10 7 1274 300 304 46 56 chr11 90429884 90429992 -31413864 + RSINE1 SINE B4 2 108 -57 7 1274 376 200 28 14 chr11 90430043 90430114 -31413742 + PB1D7 SINE Alu 23 94 -26 7 1274 999 217 14 0 chr11 90430139 90430346 -31413510 + B3 SINE B2 1 210 -6 7 1274 342 297 103 45 chr11 90430792 90431102 -31412754 - L1MC4 LINE L1 -529 7513 7186 7 1274 202 298 0 0 chr11 90432698 90432755 -31411101 + A-rich Low_complexity Low_complexity 3 59 0 7 1274 354 151 0 0 chr11 90434103 90434176 -31409680 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1274 21 0 0 0 chr11 90434277 90434298 -31409558 + AT_rich Low_complexity Low_complexity 1 21 0 7 1274 822 204 58 44 chr11 90434300 90434505 -31409351 - B3 SINE B2 -6 210 3 7 1274 24 0 0 0 chr11 90434575 90434599 -31409257 + AT_rich Low_complexity Low_complexity 1 24 0 7 1274 721 247 20 35 chr11 90435226 90435427 -31408429 - B3A SINE B2 0 198 1 7 1274 190 0 67 0 chr11 90435860 90435890 -31407966 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1274 493 192 129 75 chr11 90436894 90437080 -31406776 - B3A SINE B2 -2 196 1 7 1274 189 107 0 0 chr11 90438362 90438390 -31405466 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 7 1274 564 116 0 0 chr11 90438390 90438475 -31405381 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1274 528 259 37 0 chr11 90438531 90438666 -31405190 + ID_B1 SINE B4 78 217 -7 7 1275 28191 36 14 3 chr11 90440417 90446542 -31397314 - L1Md_T LINE L1 0 6585 427 7 1275 1215 207 60 32 chr11 90449284 90449568 -31394288 + RLTR20B1 LTR ERVK 1 292 -271 7 1275 4234 186 43 34 chr11 90450126 90451197 -31392659 + MYSERV16_I-int LTR ERVK 1 1358 -1484 7 1275 6175 127 80 8 chr11 90451191 90452379 -31391477 + MYSERV16_I-int LTR ERVK 1051 2324 -2 7 1275 2316 192 46 15 chr11 90452379 90452834 -31391022 + RLTR20B1 LTR ERVK 1 469 -94 7 1275 453 345 111 5 chr11 90452908 90453106 -31390750 - B4A SINE B4 -71 221 3 7 1275 956 252 81 7 chr11 90453149 90453421 -31390435 + B4 SINE B4 1 292 0 7 1275 294 222 0 0 chr11 90453421 90453511 -31390345 + (CATA)n Simple_repeat Simple_repeat 3 92 0 7 1275 27 0 0 0 chr11 90453520 90453547 -31390309 + AT_rich Low_complexity Low_complexity 1 27 0 7 1275 253 345 58 51 chr11 90454373 90454648 -31389208 - HAL1 LINE L1 -1482 1025 749 7 1275 21 0 0 0 chr11 90455787 90455808 -31388048 + AT_rich Low_complexity Low_complexity 1 21 0 7 1275 986 67 97 0 chr11 90457041 90457175 -31386681 + B1_Mm SINE Alu 1 147 0 7 1275 468 91 0 0 chr11 90457175 90457241 -31386615 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 7 1275 207 269 176 8 chr11 90457577 90457708 -31386148 - L2a LINE L2 -12 3414 3262 7 1275 446 330 153 28 chr11 90458187 90458695 -31385161 - L1ME2 LINE L1 -217 5947 5381 7 1275 2540 123 45 12 chr11 90459064 90459482 -31384374 - Lx LINE L1 -2 6652 6221 7 1275 728 262 97 93 chr11 90460558 90460671 -31383185 - B4 SINE B4 -20 272 166 7 1275 1706 221 16 40 chr11 90460671 90461100 -31382756 - MTD LTR MaLR 0 419 1 7 1275 728 262 97 93 chr11 90461100 90461255 -31382601 - B4 SINE B4 -127 165 3 7 1275 459 0 0 0 chr11 90462594 90462645 -31381211 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 1275 200 346 74 82 chr11 90463209 90463393 -31380463 - MIRb SINE MIR -70 198 12 7 1275 1162 50 0 0 chr11 90464228 90464367 -31379489 + B1_Mus1 SINE Alu 1 139 -9 7 1275 327 229 81 54 chr11 90464776 90464887 -31378969 + MTEa LTR MaLR 259 372 -7 7 1275 26 30 0 0 chr11 90465092 90465125 -31378731 + AT_rich Low_complexity Low_complexity 1 33 0 7 1275 319 203 0 111 chr11 90466419 90466491 -31377365 - tRNA-Ala-GCY_ tRNA tRNA -8 67 4 7 1275 333 0 0 0 chr11 90467950 90467987 -31375869 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1275 234 0 0 0 chr11 90468795 90468821 -31375035 + (TAA)n Simple_repeat Simple_repeat 2 27 0 7 1275 231 253 0 0 chr11 90469229 90469308 -31374548 + (CA)n Simple_repeat Simple_repeat 1 79 0 7 1275 1468 22 73 0 chr11 90469570 90469748 -31374108 + B2_Mm1t SINE B2 1 191 -2 7 1275 1119 268 120 4 chr11 90470332 90470789 -31373067 + Lx8 LINE L1 6919 7428 -45 7 1275 966 304 121 11 chr11 90471006 90471369 -31372487 + MTD LTR MaLR 1 403 -16 7 1275 372 300 25 49 chr11 90471759 90472004 -31371852 - L1_Mur3 LINE L1 -1493 4647 4396 7 1275 432 219 17 17 chr11 90472011 90472183 -31371673 + (TA)n Simple_repeat Simple_repeat 1 172 0 7 1275 986 289 68 20 chr11 90472214 90472823 -31371033 - L1_Mur3 LINE L1 -1771 4372 3695 7 1275 1135 36 0 0 chr11 90472833 90472972 -31370884 - B1_Mus2 SINE Alu 0 147 9 7 1275 492 156 16 107 chr11 90472868 90472990 -31370866 - MT2B LTR ERVL -337 264 154 7 1275 2302 55 0 17 chr11 90473197 90473519 -31370337 + L1Md_F2 LINE L1 6273 6582 0 7 1275 1228 28 0 0 chr11 90473912 90474053 -31369803 - B1_Mm SINE Alu -6 141 1 7 1275 182 353 50 41 chr11 90474578 90474699 -31369157 + MIRb SINE MIR 104 225 -43 7 1275 758 304 107 26 chr11 90476576 90476846 -31367010 + B4A SINE B4 1 292 0 7 1275 276 102 0 0 chr11 90476888 90476937 -31366919 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1275 321 47 0 0 chr11 90477451 90477494 -31366362 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1275 726 88 29 0 chr11 90477596 90477733 -31366123 + (TCTA)n Simple_repeat Simple_repeat 2 142 0 7 1275 3788 50 0 0 chr11 90478047 90478508 -31365348 + L1_Mus1 LINE L1 6106 6566 -1 7 1275 363 299 20 27 chr11 90478738 90478886 -31364970 + B1F1 SINE Alu 1 147 -2 7 1275 1878 233 28 0 chr11 90479150 90479540 -31364316 - MTC LTR MaLR -8 413 13 7 1275 503 164 0 9 chr11 90480040 90480145 -31363711 + CT-rich Low_complexity Low_complexity 1 104 0 7 1275 186 43 0 0 chr11 90481332 90481355 -31362501 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1275 183 42 0 0 chr11 90481386 90481410 -31362446 + (CATA)n Simple_repeat Simple_repeat 1 24 0 7 1275 329 375 93 36 chr11 90481658 90481937 -31361919 + MLT1H LTR MaLR 100 394 -155 7 1275 3481 23 2 0 chr11 90482485 90482880 -31360976 - MTA_Mm LTR MaLR 0 396 1 7 1275 181 292 76 15 chr11 90484664 90484730 -31359126 - MIRb SINE MIR -9 259 190 7 1275 222 237 0 33 chr11 90484885 90484946 -31358910 + GA-rich Low_complexity Low_complexity 2 60 0 7 1275 21 0 0 0 chr11 90485107 90485128 -31358728 + AT_rich Low_complexity Low_complexity 1 21 0 7 1275 357 349 0 0 chr11 90485808 90485914 -31357942 - B4A SINE B4 -44 248 143 7 1275 414 311 0 0 chr11 90485925 90486028 -31357828 - B4A SINE B4 -187 105 3 7 1275 1156 68 0 0 chr11 90486223 90486369 -31357487 - B1_Mus2 SINE Alu 0 147 2 7 1275 2816 55 0 11 chr11 90487526 90487876 -31355980 + ORR1A1 LTR MaLR 1 346 0 7 1275 459 211 101 0 chr11 90488403 90488512 -31355344 + B4A SINE B4 42 161 -131 8 1275 457 290 30 66 chr11 90488550 90488716 -31355140 + B4A SINE B4 132 291 -1 8 1275 219 232 0 35 chr11 90488730 90488788 -31355068 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 8 1275 452 18 18 0 chr11 90488932 90488989 -31354867 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1275 3780 137 18 0 chr11 90489892 90490520 -31353336 + L1_Mm LINE L1 5180 5818 -65 8 1275 253 175 0 0 chr11 90490521 90490561 -31353295 + MTC LTR MaLR 382 421 0 8 1275 3176 129 33 15 chr11 90490853 90491372 -31352484 - RLTR11A LTR ERVK 0 528 1 8 1275 246 194 0 0 chr11 90492769 90492831 -31351025 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 1275 767 181 7 48 chr11 90493525 90493670 -31350186 + B1_Mus2 SINE Alu 3 141 -6 8 1275 369 266 178 0 chr11 90494947 90495116 -31348740 + L1MC4 LINE L1 6682 6880 -1162 8 1275 1352 66 60 0 chr11 90495201 90495384 -31348472 + B2_Mm2 SINE B2 2 195 0 8 1275 479 235 35 0 chr11 90495535 90495650 -31348206 + PB1D7 SINE Alu 2 120 0 8 1275 1174 55 0 7 chr11 90495804 90495951 -31347905 + B1_Mus1 SINE Alu 3 148 0 8 1275 352 322 81 12 chr11 90495975 90496148 -31347708 + L1MC4 LINE L1 7473 7657 -225 8 1275 537 333 116 32 chr11 90496231 90496541 -31347315 + MLT1A LTR MaLR 26 361 -13 8 1275 241 247 64 13 chr11 90496717 90496795 -31347061 + L1MC4 LINE L1 7790 7871 -11 8 1275 613 258 107 0 chr11 90497138 90497316 -31346540 - B3 SINE B2 -19 197 1 8 1275 272 352 96 45 chr11 90497725 90498195 -31345661 + L2a LINE L2 2931 3424 -2 8 1275 269 228 0 0 chr11 90498302 90498359 -31345497 + Lx8 LINE L1 7189 7245 -228 8 1275 225 0 0 0 chr11 90500889 90500914 -31342942 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1275 7270 99 48 6 chr11 90501972 90503307 -31340549 - Lx LINE L1 -5 6649 5262 2 1275 321 169 92 0 chr11 90503367 90503432 -31340424 - PB1D7 SINE Alu -7 113 43 3 1275 366 77 0 0 chr11 90503874 90503896 -31339960 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1275 1237 48 0 0 chr11 90503896 90504043 -31339813 + B1_Mm SINE Alu 1 147 0 5 1275 366 77 0 0 chr11 90504043 90504072 -31339784 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1275 592 253 14 14 chr11 90505179 90505327 -31338529 + B1F SINE Alu 2 149 0 7 1275 317 77 113 84 chr11 90505426 90505497 -31338359 - B1_Mur4 SINE Alu -1 149 77 8 1275 354 285 6 111 chr11 90506203 90506365 -31337491 + B4A SINE B4 2 146 -146 9 1275 22 0 0 0 chr11 90506562 90506584 -31337272 + AT_rich Low_complexity Low_complexity 1 22 0 1 1275 844 218 96 0 chr11 90509861 90510058 -31333798 + B3 SINE B2 1 216 0 1 1275 296 272 0 12 chr11 90511633 90511715 -31332141 + PB1D10 SINE Alu 33 113 -4 1 1275 249 298 74 11 chr11 90512551 90512646 -31331210 + PB1D9 SINE Alu 11 111 -9 1 1275 349 250 14 0 chr11 90512930 90513002 -31330854 - ID4_ SINE ID 0 83 11 1 1275 355 341 57 78 chr11 90513641 90513886 -31329970 + L1MEf LINE L1 26 265 -6282 1 1275 580 326 79 36 chr11 90514209 90514837 -31329019 + L1MEf LINE L1 682 1338 -5302 1 1275 260 320 58 39 chr11 90515109 90515213 -31328643 + MLT1E2 LTR MaLR 1 106 -399 1 1275 284 277 53 0 chr11 90515391 90515485 -31328371 + MLT1E2 LTR MaLR 525 623 -4 1 1275 183 26 0 93 chr11 90515626 90515669 -31328187 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1275 468 324 2 0 chr11 90516171 90516310 -31327546 + B1F SINE Alu 2 143 -7 1 1275 482 0 17 0 chr11 90516310 90516368 -31327488 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1 1275 238 195 121 12 chr11 90516469 90516552 -31327304 + MIRc SINE MIR 66 157 -111 2 1275 231 377 32 8 chr11 90516808 90516931 -31326925 - MIRb SINE MIR -131 137 12 2 1275 2166 207 32 54 chr11 90517046 90517602 -31326254 + RMER15 LTR ERVL 32 575 0 2 1275 210 91 0 0 chr11 90518384 90518417 -31325439 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2 1275 263 267 93 19 chr11 90519897 90520004 -31323852 - PB1D10 SINE Alu -2 115 1 2 1275 1202 61 0 0 chr11 90520109 90520256 -31323600 - B1_Mus1 SINE Alu 0 148 2 2 1275 25 0 0 0 chr11 90520356 90520381 -31323475 + AT_rich Low_complexity Low_complexity 1 25 0 2 1275 873 144 195 16 chr11 90521086 90521276 -31322580 + URR1B DNA MER1_type 2 225 0 2 1275 449 320 78 40 chr11 90521505 90521801 -31322055 + MLT1D LTR MaLR 120 426 -79 2 1275 246 128 0 0 chr11 90521814 90521853 -31322003 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1275 216 0 0 0 chr11 90522352 90522376 -31321480 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1275 186 329 90 35 chr11 90523469 90523614 -31320242 + MIRc SINE MIR 116 268 0 3 1275 247 264 34 11 chr11 90524454 90524542 -31319314 - MER58B DNA MER1_type -30 311 222 3 1275 184 214 88 18 chr11 90524639 90524696 -31319160 + MIRb SINE MIR 194 254 -14 3 1275 189 0 0 0 chr11 90525120 90525141 -31318715 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1275 264 59 0 0 chr11 90525243 90525277 -31318579 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1275 206 186 23 0 chr11 90527267 90527310 -31316546 + T-rich Low_complexity Low_complexity 3 46 0 3 1275 314 305 32 0 chr11 90527512 90527607 -31316249 + PB1D10 SINE Alu 13 110 -7 3 1275 274 344 37 37 chr11 90529510 90529646 -31314210 + B1F SINE Alu 1 136 -13 3 1275 1307 98 16 11 chr11 90529777 90529962 -31313894 + B2_Mm2 SINE B2 2 187 -8 3 1275 1237 205 44 10 chr11 90530020 90530316 -31313540 + RLTR11A2 LTR ERVK 205 510 -17 4 1275 500 216 43 8 chr11 90531247 90531364 -31312492 - PB1 SINE Alu -1 126 6 4 1275 200 103 69 0 chr11 90531867 90531925 -31311931 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1275 761 106 0 72 chr11 90532122 90532316 -31311540 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1275 197 33 33 0 chr11 90533188 90533218 -31310638 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1275 1290 50 0 0 chr11 90533314 90533614 -31310242 + (TG)n Simple_repeat Simple_repeat 1 300 0 4 1275 465 269 17 0 chr11 90533615 90533734 -31310122 - RSINE1 SINE B4 -43 122 2 4 1275 408 265 0 43 chr11 90533875 90534013 -31309843 + B1F SINE Alu 11 142 -7 4 1275 824 92 0 15 chr11 90534563 90534695 -31309161 + B1_Mur3 SINE Alu 19 148 -1 4 1275 619 214 168 0 chr11 90535599 90535772 -31308084 + ID_B1 SINE B4 9 210 -14 4 1275 702 65 0 0 chr11 90535777 90535869 -31307987 + (GGGGA)n Simple_repeat Simple_repeat 5 96 0 5 1275 324 70 0 0 chr11 90536870 90536913 -31306943 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 5 1275 384 115 0 0 chr11 90537788 90537861 -31305995 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 1275 594 182 19 0 chr11 90537861 90538015 -31305841 + GA-rich Low_complexity Low_complexity 4 160 0 5 1275 390 268 74 82 chr11 90538606 90538649 -31305207 + CYRA11_Mm Unknown Y-chromosome 123 163 -454 5 1275 1042 170 32 23 chr11 90538649 90538866 -31304990 - URR1B DNA MER1_type 0 225 7 5 1275 287 269 51 0 chr11 90540151 90540229 -31303627 + ID4 SINE ID 2 83 0 5 1275 297 0 0 0 chr11 90540750 90540783 -31303073 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1275 501 17 0 0 chr11 90540837 90540895 -31302961 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1275 777 194 15 73 chr11 90541120 90541326 -31302530 + B3A SINE B2 5 198 0 5 1275 432 0 0 0 chr11 90541821 90541869 -31301987 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1275 349 292 58 23 chr11 90542331 90542503 -31301353 + RMER20B LTR ERVK 242 419 -208 6 1275 351 0 0 0 chr11 90542523 90542562 -31301294 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1275 294 198 44 0 chr11 90543086 90543177 -31300679 + CT-rich Low_complexity Low_complexity 2 96 0 6 1275 969 147 0 7 chr11 90543193 90543344 -31300512 - B1_Mur4 SINE Alu 0 150 1 6 1275 1296 7 7 0 chr11 90544295 90544441 -31299415 + B1_Mm SINE Alu 1 147 0 6 1275 206 0 69 0 chr11 90544456 90544485 -31299371 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1275 396 0 0 0 chr11 90545170 90545214 -31298642 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1275 530 288 48 84 chr11 90545245 90545495 -31298361 + B4A SINE B4 35 275 -17 6 1275 228 67 0 0 chr11 90546509 90546539 -31297317 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1275 248 278 10 20 chr11 90546843 90546942 -31296914 - MIRb SINE MIR -117 151 54 6 1275 1187 161 9 27 chr11 90547145 90547368 -31296488 - URR1B DNA MER1_type 0 225 7 7 1275 197 196 53 18 chr11 90548398 90548455 -31295401 + MIRc SINE MIR 100 158 -110 7 1275 1433 45 17 6 chr11 90550236 90550413 -31293443 + B2_Mm2 SINE B2 3 181 -14 7 1275 1172 195 0 5 chr11 90550880 90551091 -31292765 + B3 SINE B2 2 211 -5 7 1275 458 70 0 14 chr11 90551259 90551331 -31292525 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 7 1275 207 69 0 0 chr11 90551332 90551361 -31292495 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1275 222 324 0 158 chr11 90551409 90551618 -31292238 - B4 SINE B4 -114 178 3 7 1275 221 271 35 12 chr11 90553862 90553948 -31289908 - MER5B DNA MER1_type -58 120 33 7 1275 1015 110 0 0 chr11 90553982 90554118 -31289738 - B1_Mus2 SINE Alu -11 136 1 7 1275 219 65 0 0 chr11 90554388 90554410 -31289446 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 1275 393 75 0 0 chr11 90554410 90554463 -31289393 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1275 219 65 0 0 chr11 90554463 90554471 -31289385 + (TA)n Simple_repeat Simple_repeat 1 8 0 8 1275 258 32 0 0 chr11 90554471 90554502 -31289354 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1275 269 322 0 0 chr11 90554502 90554592 -31289264 - RMER1A Other Other -752 278 189 8 1275 775 245 170 50 chr11 90554638 90555151 -31288705 - RMER1B Other Other -678 664 46 8 1275 369 0 0 0 chr11 90555959 90556000 -31287856 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1275 285 52 86 0 chr11 90557108 90557166 -31286690 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 8 1275 293 242 62 86 chr11 90557169 90557275 -31286581 - PB1D10 SINE Alu -15 102 1 8 1275 377 20 20 0 chr11 90557669 90557719 -31286137 + (CAA)n Simple_repeat Simple_repeat 2 52 0 8 1275 993 233 24 14 chr11 90557797 90558010 -31285846 - B3 SINE B2 0 216 2 8 1275 445 306 18 53 chr11 90558198 90558367 -31285489 - Kanga1a DNA Tc2 -413 341 179 9 1275 242 238 107 48 chr11 90558658 90558742 -31285114 - PB1D7 SINE Alu 0 120 32 9 1275 2904 98 12 2 chr11 90558886 90559285 -31284571 + Lx2A LINE L1 6606 7008 0 9 1275 216 0 0 0 chr11 90559411 90559435 -31284421 + (GGA)n Simple_repeat Simple_repeat 1 24 0 9 1275 531 0 0 0 chr11 90560266 90560325 -31283531 + (CAAAA)n Simple_repeat Simple_repeat 3 61 0 9 1275 271 277 65 89 chr11 90561075 90561198 -31282658 - MER58B DNA MER1_type -18 323 204 9 1275 1158 146 126 0 chr11 90562559 90562813 -31281043 + Lx9 LINE L1 7358 7643 -1 9 1275 1589 242 38 83 chr11 90563093 90563159 -31280697 - RLTR28B LTR ERVL 0 481 421 9 1275 4359 35 12 2 chr11 90563159 90563647 -31280209 + MT2_Mm LTR ERVL 1 493 0 9 1275 1589 242 38 83 chr11 90563647 90564084 -31279772 - RLTR28B LTR ERVL -61 420 1 9 1275 386 139 14 0 chr11 90564241 90564313 -31279543 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1275 297 0 0 0 chr11 90564947 90564980 -31278876 + (GGGAGA)n Simple_repeat Simple_repeat 4 36 0 1 1275 432 0 0 0 chr11 90565153 90565201 -31278655 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1 1275 1801 253 36 46 chr11 90565860 90566357 -31277499 + Lx6 LINE L1 6940 7431 -29 1 1275 624 129 0 0 chr11 90566357 90566481 -31277375 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 1 1275 7453 74 16 8 chr11 90567243 90568489 -31275367 + L1_Mus2 LINE L1 5299 6565 -1 1 1275 405 0 0 0 chr11 90568515 90568560 -31275296 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1 1275 1169 64 32 0 chr11 90568560 90568716 -31275140 - B2_Mm2 SINE B2 -34 161 1 1 1275 676 256 99 5 chr11 90568727 90568919 -31274937 - B3 SINE B2 -5 211 2 1 1275 260 302 47 0 chr11 90570462 90570548 -31273308 - ORR1E LTR MaLR -250 109 20 1 1276 705 12 0 0 chr11 90570899 90570981 -31272875 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1276 480 297 146 46 chr11 90571036 90571474 -31272382 - L1MA9 LINE L1 -474 5838 5357 1 1276 540 297 49 79 chr11 90571507 90572077 -31271779 - L1MA9 LINE L1 -769 5374 4821 1 1276 395 291 47 11 chr11 90572452 90572644 -31271212 + MIRc SINE MIR 28 234 -34 1 1276 221 384 80 0 chr11 90572917 90573029 -31270827 + MIR3 SINE MIR 64 184 -24 1 1276 211 290 100 27 chr11 90573385 90573495 -31270361 - MIRc SINE MIR -148 120 3 1 1276 1517 292 104 14 chr11 90573990 90574569 -31269287 - Lx8 LINE L1 -654 6819 6189 1 1276 222 222 0 0 chr11 90575694 90575748 -31268108 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1276 534 103 0 0 chr11 90575783 90575861 -31267995 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1276 189 229 0 0 chr11 90575896 90575944 -31267912 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1276 357 82 0 0 chr11 90575978 90576027 -31267829 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1276 22 0 0 0 chr11 90576100 90576122 -31267734 + AT_rich Low_complexity Low_complexity 1 22 0 1 1276 694 276 97 31 chr11 90576263 90576551 -31267305 - Tigger7 DNA MER2_type -53 2438 2132 1 1276 407 292 84 151 chr11 90576545 90576809 -31267047 - Tigger7 DNA MER2_type -2213 278 24 1 1276 760 203 15 0 chr11 90576809 90576942 -31266914 + B1_Mur2 SINE Alu 1 135 -14 1 1276 342 0 0 0 chr11 90576944 90576982 -31266874 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1276 407 292 84 151 chr11 90576982 90577012 -31266844 - Tigger7 DNA MER2_type -2468 23 1 1 1276 522 214 15 45 chr11 90577082 90577214 -31266642 + RMER20B LTR ERVK 1 128 -499 1 1276 420 285 45 19 chr11 90577404 90577558 -31266298 + RMER20B LTR ERVK 359 516 0 1 1276 534 325 101 23 chr11 90577565 90578053 -31265803 - L1ME1 LINE L1 -60 6119 5589 1 1276 22 0 0 0 chr11 90578053 90578075 -31265781 + AT_rich Low_complexity Low_complexity 1 22 0 1 1276 991 282 39 39 chr11 90578099 90578383 -31265473 - B4A SINE B4 0 292 9 1 1276 2187 158 54 10 chr11 90578436 90578530 -31265326 + MTC LTR MaLR 8 114 -307 1 1276 441 0 0 0 chr11 90578530 90578579 -31265277 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1276 2187 158 54 10 chr11 90578579 90578873 -31264983 + MTC LTR MaLR 115 412 -9 1 1276 423 268 24 0 chr11 90578906 90579029 -31264827 - L1ME1 LINE L1 -642 5537 5412 1 1276 664 267 11 55 chr11 90579165 90579347 -31264509 - B3A SINE B2 -20 178 5 1 1276 427 259 70 47 chr11 90579349 90579606 -31264250 - L1ME1 LINE L1 -808 5338 5076 1 1276 1220 269 94 14 chr11 90579838 90580200 -31263656 + MTD LTR MaLR 18 408 -11 1 1276 245 322 63 53 chr11 90580869 90580964 -31262892 + L2c LINE L2 3253 3348 -39 1 1276 220 329 58 75 chr11 90581065 90581206 -31262650 + MIRb SINE MIR 1 130 -132 1 1276 534 140 0 0 chr11 90581258 90581372 -31262484 + (GA)n Simple_repeat Simple_repeat 1 114 0 1 1276 561 346 0 0 chr11 90581403 90581556 -31262300 - RSINE1 SINE B4 -11 154 2 1 1276 25 48 0 46 chr11 90582501 90582526 -31261330 + AT_rich Low_complexity Low_complexity 1 25 0 1 1276 1194 68 0 0 chr11 90582526 90582672 -31261184 + B1_Mus2 SINE Alu 2 147 0 1 1276 25 48 0 46 chr11 90582672 90582711 -31261145 + AT_rich Low_complexity Low_complexity 1 37 0 1 1276 225 0 0 0 chr11 90583127 90583152 -31260704 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1276 1267 68 0 0 chr11 90583152 90583299 -31260557 - B1_Mm SINE Alu 0 147 1 1 1276 1499 78 10 5 chr11 90583299 90583492 -31260364 - B2_Mm2 SINE B2 0 195 2 1 1276 223 376 66 22 chr11 90584807 90584943 -31258913 + MIRb SINE MIR 75 216 -52 1 1276 423 19 0 0 chr11 90586324 90586377 -31257479 + L1Md_F3 LINE L1 6518 6570 -14 1 1276 748 181 104 18 chr11 90586606 90586769 -31257087 - B2_Mm2 SINE B2 -18 177 1 1 1276 198 0 0 0 chr11 90586769 90586791 -31257065 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1 1276 4722 227 36 16 chr11 90586880 90587891 -31255965 - Lx5 LINE L1 -16 7034 6004 1 1276 370 250 85 0 chr11 90587939 90588038 -31255818 + PB1D10 SINE Alu 1 107 -10 1 1276 201 411 31 31 chr11 90589417 90589515 -31254341 - L2b LINE L2 -1 3374 3277 1 1276 737 295 86 26 chr11 90589614 90589917 -31253939 + MER58B DNA MER1_type 2 322 -19 1 1276 306 0 0 0 chr11 90590478 90590512 -31253344 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1276 1062 298 74 28 chr11 90590512 90590875 -31252981 - RLTR18B LTR ERVK -9 503 124 1 1276 861 254 0 22 chr11 90590883 90591068 -31252788 - RLTR18B LTR ERVK -323 189 9 1 1276 764 326 25 14 chr11 90591145 90591422 -31252434 + B4A SINE B4 3 282 -10 1 1276 861 150 0 0 chr11 90591464 90591644 -31252212 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1276 255 167 0 0 chr11 90591703 90591769 -31252087 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1276 342 60 0 57 chr11 90591787 90591840 -31252016 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1276 240 297 48 19 chr11 90592344 90592447 -31251409 - Lx8 LINE L1 -4 7469 7364 1 1276 845 293 60 33 chr11 90592447 90592747 -31251109 - Lx8 LINE L1 -45 7428 7121 1 1276 514 198 177 56 chr11 90592758 90592956 -31250900 - Lx7 LINE L1 -6 7690 7469 1 1276 4781 201 39 17 chr11 90593006 90593945 -31249911 + RMER1B Other Other 2 961 -105 1 1276 1952 154 48 9 chr11 90593952 90594287 -31249569 + ORR1B1 LTR MaLR 47 394 0 1 1276 326 221 12 38 chr11 90594288 90594368 -31249488 + RMER1B Other Other 925 1002 -64 1 1276 1207 322 20 30 chr11 90594543 90595040 -31248816 - Lx8 LINE L1 -357 7116 6625 1 1276 453 264 46 63 chr11 90596535 90596709 -31247147 + MLT1A1 LTR MaLR 8 178 -230 1 1276 1032 285 86 4 chr11 90596958 90597226 -31246630 - B4 SINE B4 -1 291 2 1 1276 34 24 0 0 chr11 90597421 90597462 -31246394 + AT_rich Low_complexity Low_complexity 1 41 0 1 1276 525 104 0 0 chr11 90597804 90597881 -31245975 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1276 574 254 71 89 chr11 90598434 90598659 -31245197 + MLT2B4 LTR ERVL 1 221 -335 1 1276 621 294 78 82 chr11 90598768 90599061 -31244795 - B4 SINE B4 0 292 1 1 1276 269 258 165 0 chr11 90599134 90599231 -31244625 + MIRb SINE MIR 20 132 -136 1 1276 1170 203 114 51 chr11 90599237 90599584 -31244272 + RLTR20A2 LTR ERVK 1 375 -159 1 1276 560 56 0 0 chr11 90599584 90599655 -31244201 + L1_Mus1 LINE L1 6495 6565 -2 1 1276 1145 225 188 49 chr11 90599655 90599691 -31244165 + RLTR20A2 LTR ERVK 376 431 -103 1 1276 600 50 0 0 chr11 90599691 90599771 -31244085 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1276 1145 225 188 49 chr11 90599771 90599854 -31244002 + RLTR20A2 LTR ERVK 432 531 -3 1 1276 432 0 0 0 chr11 90601013 90601061 -31242795 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1276 471 276 112 28 chr11 90601065 90601315 -31242541 - L1MA6 LINE L1 -6 6294 6024 1 1276 222 300 114 8 chr11 90601820 90601951 -31241905 + L2a LINE L2 3280 3424 -2 1 1276 1752 154 62 89 chr11 90603861 90604249 -31239607 - ORR1B1 LTR MaLR 0 394 3 1 1276 279 258 10 88 chr11 90604336 90604438 -31239418 + LTR16C LTR ERVL 355 448 -41 1 1276 347 233 115 10 chr11 90604568 90604672 -31239184 + PB1D10 SINE Alu 1 115 -2 1 1276 436 239 26 52 chr11 90605225 90605340 -31238516 - PB1D10 SINE Alu -1 116 5 1 1276 411 302 0 0 chr11 90605402 90605498 -31238358 - PB1D10 SINE Alu 0 117 22 1 1276 423 380 25 29 chr11 90605549 90605790 -31238066 - LTR82A LTR ERVL -505 367 128 1 1276 272 246 0 68 chr11 90607069 90607143 -31236713 + L1M4 LINE L1 5327 5395 -751 1 1276 696 24 0 0 chr11 90607153 90607235 -31236621 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1276 849 288 34 58 chr11 90607291 90607586 -31236270 + B4A SINE B4 3 290 -2 1 1276 1532 270 93 27 chr11 90607657 90608331 -31235525 + L1MB3 LINE L1 5464 6182 -1 1 1276 1535 257 27 16 chr11 90608340 90608715 -31235141 - MTE2b LTR MaLR 0 379 1 1 1276 351 0 0 0 chr11 90608822 90608861 -31234995 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1276 701 203 94 0 chr11 90608981 90609109 -31234747 + B1_Mur2 SINE Alu 1 140 -9 1 1276 519 122 0 0 chr11 90609109 90609199 -31234657 + (CCAA)n Simple_repeat Simple_repeat 4 93 0 1 1276 213 204 0 0 chr11 90609801 90609845 -31234011 + CT-rich Low_complexity Low_complexity 5 48 0 1 1276 214 320 56 93 chr11 90611329 90611491 -31232365 - L4 LINE RTE -502 1527 1372 1 1276 342 0 0 0 chr11 90611530 90611568 -31232288 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1276 252 0 0 0 chr11 90611568 90611595 -31232261 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1276 26 64 0 0 chr11 90611595 90611642 -31232214 + AT_rich Low_complexity Low_complexity 1 47 0 1 1276 1639 223 33 46 chr11 90611643 90612038 -31231818 - Lx6 LINE L1 -27 7433 7044 1 1276 184 391 36 9 chr11 90612048 90612159 -31231697 - L4 LINE RTE -728 1301 1188 1 1276 277 300 90 9 chr11 90612603 90612714 -31231142 - B3 SINE B2 0 216 97 1 1276 1001 301 15 55 chr11 90613029 90613300 -31230556 + B4A SINE B4 29 288 -4 1 1276 225 322 96 11 chr11 90613257 90613351 -31230505 + B3 SINE B2 113 214 -2 1 1276 27 29 0 0 chr11 90613451 90613485 -31230371 + AT_rich Low_complexity Low_complexity 1 34 0 1 1276 714 232 196 50 chr11 90614969 90615286 -31228570 - MT2A LTR ERVL 0 533 171 1 1276 270 303 15 0 chr11 90615299 90615365 -31228491 - MTE2b LTR MaLR -306 73 7 1 1276 268 287 83 14 chr11 90616038 90616183 -31227673 - L1MD2 LINE L1 -41 6318 6164 1 1276 375 23 0 0 chr11 90616193 90616237 -31227619 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1276 219 319 107 25 chr11 90616416 90616538 -31227318 + MIRc SINE MIR 7 138 -130 1 1276 559 297 65 72 chr11 90616903 90617193 -31226663 - B4A SINE B4 0 292 5 2 1276 5521 100 27 9 chr11 90617779 90619173 -31224683 - Lx3B LINE L1 -527 6446 5041 2 1276 3081 114 39 22 chr11 90619173 90619665 -31224191 + Lx3B LINE L1 6470 6969 -4 2 1276 183 129 0 0 chr11 90619670 90619701 -31224155 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1276 297 0 0 0 chr11 90619844 90619877 -31223979 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1276 1216 54 0 0 chr11 90619877 90620024 -31223832 - B1_Mus2 SINE Alu 0 147 1 2 1276 289 267 136 40 chr11 90620350 90620475 -31223381 - ORR1E LTR MaLR -213 146 10 2 1276 611 337 35 108 chr11 90621725 90622097 -31221759 + MER2 DNA MER2_type 1 345 0 2 1276 5020 128 35 3 chr11 90623208 90623531 -31220325 - Lx4A LINE L1 0 7058 6719 2 1276 294 50 0 0 chr11 90623531 90623571 -31220285 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1276 5020 128 35 3 chr11 90623571 90624016 -31219840 - Lx4A LINE L1 -340 6718 6266 2 1276 8219 130 41 9 chr11 90624016 90625539 -31218317 + Lx2B LINE L1 5423 6995 -5 2 1276 1004 76 0 0 chr11 90625681 90625812 -31218044 + B1_Mus2 SINE Alu 5 135 -12 2 1276 262 325 59 18 chr11 90625823 90625992 -31217864 - L1M5 LINE L1 -1285 4861 4686 2 1276 230 0 33 0 chr11 90625992 90626022 -31217834 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1276 1221 62 0 0 chr11 90626022 90626168 -31217688 - B1_Mus2 SINE Alu -1 146 1 2 1276 26 0 0 0 chr11 90626171 90626197 -31217659 + AT_rich Low_complexity Low_complexity 1 26 0 2 1276 417 272 72 66 chr11 90626467 90627133 -31216723 - L1MEf LINE L1 -2189 3954 3288 2 1276 1870 278 95 69 chr11 90627174 90627605 -31216251 - Lx9 LINE L1 -8 7636 7147 2 1276 186 43 0 0 chr11 90627605 90627628 -31216228 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1276 1870 278 95 69 chr11 90627628 90628206 -31215650 - Lx9 LINE L1 -498 7146 6601 2 1276 395 198 132 0 chr11 90628223 90628314 -31215542 - Lx9 LINE L1 -1198 6446 6344 2 1276 2123 144 29 64 chr11 90628404 90628812 -31215044 + ORR1B1 LTR MaLR 1 394 0 2 1276 366 267 30 0 chr11 90628897 90629028 -31214828 - L1MEf LINE L1 -4509 1733 1599 2 1276 713 322 19 14 chr11 90629236 90629447 -31214409 - B3 SINE B2 0 216 5 2 1276 487 294 140 0 chr11 90629453 90629589 -31214267 - ID_B1 SINE B4 -69 155 1 2 1276 328 297 21 52 chr11 90629601 90629793 -31214063 - L1MEf LINE L1 -4723 1519 1334 2 1276 297 198 291 19 chr11 90630005 90630108 -31213748 + MER31A LTR ERV1 26 156 -329 2 1276 1460 211 96 20 chr11 90630108 90630452 -31213404 + ORR1D1 LTR MaLR 5 374 0 2 1276 1658 58 0 0 chr11 90630477 90630685 -31213171 + ORR1A1 LTR MaLR 139 346 0 2 1276 35009 24 4 7 chr11 90630710 90635667 -31208189 + L1Md_T LINE L1 654 5586 -297 2 1276 8190 46 0 1 chr11 90635667 90636664 -31207192 + L1Md_T LINE L1 5587 6582 0 2 1276 653 311 82 36 chr11 90636699 90636979 -31206877 + MER31A LTR ERV1 171 463 -22 2 1276 1158 219 64 25 chr11 90638782 90638847 -31205009 - B4 SINE B4 0 292 225 2 1276 468 0 0 0 chr11 90638847 90638899 -31204957 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2 1276 1158 219 64 25 chr11 90638899 90639114 -31204742 - B4 SINE B4 -68 224 2 2 1276 212 304 25 25 chr11 90639304 90639385 -31204471 + MIRc SINE MIR 19 99 -169 2 1276 749 299 63 59 chr11 90639730 90640223 -31203633 - Lx8 LINE L1 -9 7464 6970 2 1276 495 0 0 0 chr11 90640642 90640697 -31203159 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1276 1473 235 82 5 chr11 90641147 90641536 -31202320 + MTD LTR MaLR 1 419 0 2 1276 408 279 0 43 chr11 90641538 90641654 -31202202 - PB1D10 SINE Alu -6 111 1 2 1276 4207 77 3 9 chr11 90642365 90642930 -31200926 - L1_Mus4 LINE L1 -9 6627 6066 2 1276 372 77 0 0 chr11 90643307 90643359 -31200497 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 2 1276 504 0 0 0 chr11 90643660 90643716 -31200140 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 2 1276 1446 182 108 86 chr11 90645546 90646079 -31197777 + RLTR19-int LTR ERVK 2480 3007 -3130 2 1276 258 215 0 86 chr11 90646228 90646345 -31197511 + RLTR19-int LTR ERVK 3272 3378 -2759 2 1276 412 254 30 38 chr11 90647204 90647335 -31196521 + RMER10B LTR ERVL 269 398 0 2 1276 1744 110 0 4 chr11 90648598 90648863 -31194993 - L1_Mus4 LINE L1 -1 6635 6372 2 1276 25 51 0 0 chr11 90649774 90649813 -31194043 + AT_rich Low_complexity Low_complexity 1 39 0 2 1276 236 406 0 0 chr11 90649962 90650058 -31193798 + MIRc SINE MIR 2 97 -171 2 1276 6225 106 12 2 chr11 90650216 90650229 -31193627 + Lx3B LINE L1 5862 5874 -1099 2 1276 3640 138 12 12 chr11 90650229 90650808 -31193048 - Lx4B LINE L1 -15 7043 6465 2 1276 6225 106 12 2 chr11 90650808 90651759 -31192097 + Lx3B LINE L1 5875 6835 -138 2 1276 297 0 0 0 chr11 90651885 90651918 -31191938 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1276 30775 84 12 1 chr11 90652639 90657949 -31185907 + L1Md_F2 LINE L1 217 5585 -298 2 1276 7354 87 0 4 chr11 90657950 90658948 -31184908 + L1Md_F2 LINE L1 5587 6580 -2 2 1276 22 0 0 0 chr11 90659319 90659341 -31184515 + AT_rich Low_complexity Low_complexity 1 22 0 2 1276 719 261 178 56 chr11 90659723 90660183 -31183673 + RLTR12B LTR ERVK 11 530 -38 2 1276 4057 154 21 15 chr11 90660443 90661194 -31182662 + RMER6A LTR ERVK 1 756 0 2 1276 744 294 14 38 chr11 90661378 90661671 -31182185 - B4A SINE B4 -6 286 1 2 1276 2570 209 37 101 chr11 90662010 90662855 -31181001 - Lx7 LINE L1 -3 7693 6903 2 1276 550 341 61 14 chr11 90663535 90663749 -31180107 - MER58A DNA MER1_type 0 224 1 2 1276 226 364 25 25 chr11 90665741 90665862 -31177994 - MIRb SINE MIR -76 192 72 2 1276 640 298 26 11 chr11 90667774 90667964 -31175892 - ID_B1 SINE B4 0 224 32 2 1276 325 266 20 95 chr11 90668724 90668903 -31174953 - L2c LINE L2 0 3375 3202 2 1276 186 278 19 0 chr11 90669817 90669871 -31173985 + L3 LINE CR1 4432 4486 -3 2 1276 205 267 91 26 chr11 90670572 90670649 -31173207 + MIRc SINE MIR 115 196 -72 2 1276 580 275 7 7 chr11 90671606 90671749 -31172107 + ORR1D1 LTR MaLR 1 143 -231 2 1276 2888 112 10 0 chr11 90671762 90672172 -31171684 - Lx LINE L1 -2 6652 6239 2 1276 4170 107 4 13 chr11 90672172 90672914 -31170942 - Lx LINE L1 -687 5967 5233 2 1276 849 220 131 18 chr11 90672914 90673136 -31170720 + ORR1D1 LTR MaLR 128 374 0 2 1276 235 323 94 35 chr11 90673479 90673649 -31170207 - B4 SINE B4 -70 222 43 2 1276 207 0 0 0 chr11 90674778 90674801 -31169055 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1276 447 19 0 0 chr11 90674801 90674852 -31169004 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1276 549 303 41 0 chr11 90674854 90674999 -31168857 - RSINE1 SINE B4 -14 151 1 2 1276 1197 39 0 0 chr11 90675041 90675196 -31168660 + (TTC)n Simple_repeat Simple_repeat 2 156 0 2 1276 630 0 0 0 chr11 90675226 90675296 -31168560 + (TTC)n Simple_repeat Simple_repeat 3 72 0 2 1276 1208 37 0 0 chr11 90675297 90675431 -31168425 - B1_Mm SINE Alu -13 134 1 2 1276 21 0 0 0 chr11 90676441 90676462 -31167394 + AT_rich Low_complexity Low_complexity 1 21 0 2 1276 453 50 0 0 chr11 90676486 90676546 -31167310 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1276 260 200 15 0 chr11 90676546 90676611 -31167245 + GA-rich Low_complexity Low_complexity 4 69 0 2 1276 405 0 0 0 chr11 90677316 90677361 -31166495 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1276 255 260 92 20 chr11 90677618 90677716 -31166140 - MIR SINE MIR -105 157 53 2 1276 180 242 31 46 chr11 90677819 90677884 -31165972 + L2c LINE L2 3254 3317 -70 2 1276 307 318 137 74 chr11 90678717 90679016 -31164840 - MLT1K LTR MaLR -128 467 150 2 1276 208 288 98 25 chr11 90679289 90679401 -31164455 - MIRc SINE MIR -147 121 2 2 1276 230 268 0 27 chr11 90679977 90680050 -31163806 + (TATG)n Simple_repeat Simple_repeat 2 72 0 2 1276 732 337 41 26 chr11 90680060 90680331 -31163525 + MER2 DNA MER2_type 9 283 -62 2 1276 363 44 0 0 chr11 90680414 90680459 -31163397 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1276 324 301 0 0 chr11 90680888 90680961 -31162895 + ID4 SINE ID 5 77 -6 2 1276 810 208 13 0 chr11 90681894 90682043 -31161813 + B3A SINE B2 1 151 -47 2 1276 8617 25 0 5 chr11 90682060 90682994 -31160862 - RLTR13B3 LTR ERVK 0 929 1 2 1276 570 41 0 0 chr11 90684216 90684289 -31159567 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1276 703 289 0 7 chr11 90684312 90684455 -31159401 - RSINE1 SINE B4 -12 153 12 2 1276 4849 132 58 10 chr11 90684462 90685294 -31158562 + RMER12B LTR ERVK 1 872 -532 2 1276 189 107 0 0 chr11 90685621 90685649 -31158207 + (CAG)n Simple_repeat Simple_repeat 2 29 0 2 1276 3058 54 81 3 chr11 90687973 90688344 -31155512 - MTB LTR MaLR 0 400 1 2 1276 215 103 26 0 chr11 90688503 90688542 -31155314 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 2 1276 5846 68 39 1 chr11 90688546 90689271 -31154585 - L1_Mus3 LINE L1 -7 6631 5880 2 1276 5303 90 1 67 chr11 90689271 90690131 -31153725 + L1_Mus3 LINE L1 5058 5860 -706 2 1276 360 335 6 54 chr11 90690437 90690670 -31153186 + B4 SINE B4 1 264 -28 2 1276 345 47 0 0 chr11 90690692 90690735 -31153121 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1276 358 263 13 13 chr11 90690742 90690819 -31153037 + ID4_ SINE ID 2 78 -5 2 1276 2812 5 4 225 chr11 90690821 90691292 -31152564 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1276 29537 19 1 1 chr11 90691292 90694562 -31149294 - IAPEz-int LTR ERVK 0 6481 3210 2 1276 6835 81 146 72 chr11 90694561 90695777 -31148079 - IAPEz-int LTR ERVK -5168 1313 8 2 1276 2812 5 4 225 chr11 90695777 90696248 -31147608 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1276 473 348 0 14 chr11 90696499 90696706 -31147150 - MIR SINE MIR -13 249 46 2 1276 716 67 29 0 chr11 90697310 90697415 -31146441 + (TTCCC)n Simple_repeat Simple_repeat 3 110 0 2 1276 446 317 49 28 chr11 90697417 90697560 -31146296 - B1F1 SINE Alu 0 149 4 2 1276 360 342 41 88 chr11 90697419 90697589 -31146267 - ID_B1 SINE B4 0 224 63 2 1276 337 324 28 0 chr11 90697569 90697677 -31146179 - PB1D7 SINE Alu -5 115 5 2 1276 303 331 115 0 chr11 90697784 90697914 -31145942 - MIRb SINE MIR -21 247 103 2 1276 1562 180 85 18 chr11 90697927 90698093 -31145763 - ORR1C1 LTR MaLR -15 363 177 2 1276 473 16 33 0 chr11 90698093 90698154 -31145702 + (GGGAGA)n Simple_repeat Simple_repeat 6 68 0 2 1276 1562 180 85 18 chr11 90698154 90698327 -31145529 - ORR1C1 LTR MaLR -202 176 1 2 1276 190 353 14 14 chr11 90698331 90698400 -31145456 - MIR SINE MIR -108 100 32 2 1276 312 367 56 37 chr11 90699203 90699418 -31144438 - MER20 DNA MER1_type 0 219 1 2 1276 757 309 88 19 chr11 90699522 90699783 -31144073 - B4 SINE B4 -11 281 3 2 1276 279 0 0 0 chr11 90700112 90700143 -31143713 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1276 1807 126 136 19 chr11 90700382 90700698 -31143158 + Lx3_Mus LINE L1 6649 7001 -8 3 1276 311 278 61 46 chr11 90700949 90701099 -31142757 + PB1D7 SINE Alu 1 148 -1 3 1276 309 273 31 41 chr11 90701100 90701196 -31142660 + ID4 SINE ID 3 98 -54 3 1276 352 352 109 0 chr11 90701234 90701362 -31142494 - B1F2 SINE Alu 0 149 8 3 159 508 302 37 108 chr11 90701610 90701851 -31142005 - MER67A LTR ERV1 -311 232 9 3 1277 1079 285 16 71 chr11 90701912 90702346 -31141510 - BGLII_B LTR ERVK -31 410 1 3 1277 666 37 0 0 chr11 90702574 90702655 -31141201 + (TC)n Simple_repeat Simple_repeat 1 81 0 3 1277 192 247 0 0 chr11 90703887 90703972 -31139884 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1277 465 226 0 0 chr11 90703986 90704163 -31139693 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1277 1768 215 120 104 chr11 90704213 90704625 -31139231 - RMER6D LTR ERVK -4 716 357 3 1277 237 65 0 0 chr11 90704625 90704656 -31139200 + (AATTG)n Simple_repeat Simple_repeat 5 35 0 3 1277 1768 215 120 104 chr11 90704656 90704945 -31138911 - RMER6D LTR ERVK -364 356 4 3 1277 387 0 0 0 chr11 90704952 90704995 -31138861 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1277 386 296 18 25 chr11 90705688 90705851 -31138005 - MER121 Unknown Unknown -177 235 74 3 1277 4102 45 2 0 chr11 90706786 90707254 -31136602 + L1Md_F2 LINE L1 6114 6582 0 3 1277 36 53 0 0 chr11 90707721 90707778 -31136078 + AT_rich Low_complexity Low_complexity 1 57 0 3 1277 378 0 0 0 chr11 90707778 90707820 -31136036 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1277 1076 176 50 0 chr11 90707823 90708005 -31135851 - B3 SINE B2 -25 191 1 3 1277 721 298 104 35 chr11 90708245 90708942 -31134914 - L1MEc LINE L1 -2272 4047 3303 3 1277 224 59 0 29 chr11 90708942 90708977 -31134879 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1277 324 314 96 50 chr11 90708977 90709021 -31134835 - L1MEc LINE L1 -3017 3302 3271 3 1277 565 309 22 22 chr11 90709021 90709203 -31134653 - B3A SINE B2 -16 182 1 3 1277 324 314 96 50 chr11 90709203 90709397 -31134459 - L1MEc LINE L1 -3049 3270 3069 3 1277 383 378 76 29 chr11 90709485 90709801 -31134055 - L1MEc LINE L1 -5720 680 350 3 1277 334 232 20 31 chr11 90710520 90710618 -31133238 + MLT1N2 LTR MaLR 427 523 -39 3 1277 2980 49 0 9 chr11 90710629 90710979 -31132877 + L1Md_F2 LINE L1 6228 6574 -8 3 1277 353 369 8 23 chr11 90710987 90711120 -31132736 + ORR1E LTR MaLR 1 131 -228 3 1277 599 350 29 24 chr11 90711610 90711818 -31132038 + B4A SINE B4 2 210 -82 3 1277 378 0 0 0 chr11 90711827 90711869 -31131987 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1277 3290 86 0 5 chr11 90711892 90712300 -31131556 - MTB_Mm LTR MaLR -1 406 1 3 1277 324 0 0 0 chr11 90712372 90712408 -31131448 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1277 486 49 0 0 chr11 90712408 90712468 -31131388 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1277 24 32 0 0 chr11 90712560 90712591 -31131265 + AT_rich Low_complexity Low_complexity 1 31 0 3 1277 669 305 32 5 chr11 90713938 90714159 -31129697 - L1M6 LINE L1 -5676 820 594 3 1277 1970 169 10 92 chr11 90714753 90715172 -31128684 + ORR1B1 LTR MaLR 14 394 0 3 1277 857 319 33 0 chr11 90715396 90715455 -31128401 - B4A SINE B4 -6 286 225 3 1277 1046 63 7 0 chr11 90715455 90715598 -31128258 + (TCTA)n Simple_repeat Simple_repeat 4 147 0 3 1277 857 319 33 0 chr11 90715598 90715811 -31128045 - B4A SINE B4 -68 224 7 3 1277 331 330 150 17 chr11 90717669 90717789 -31126067 - B4 SINE B4 -154 138 3 3 1277 180 77 0 0 chr11 90718487 90718513 -31125343 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1277 503 345 25 28 chr11 90718579 90718862 -31124994 - B4A SINE B4 0 292 11 3 1277 342 67 0 0 chr11 90719081 90719126 -31124730 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 3 1277 217 254 0 40 chr11 90720036 90720110 -31123746 + T-rich Low_complexity Low_complexity 4 74 0 3 1277 237 210 0 0 chr11 90720574 90720636 -31123220 + CT-rich Low_complexity Low_complexity 3 64 0 3 1277 682 240 1 12 chr11 90720675 90720812 -31123044 - B1_Mur1 SINE Alu -13 136 5 3 1277 1970 169 43 3 chr11 90722718 90723068 -31120788 + RLTR9A LTR ERVK 5 368 0 3 1277 418 289 11 86 chr11 90723655 90723829 -31120027 - RSINE1 SINE B4 -2 163 3 3 1277 514 314 46 161 chr11 90724013 90724181 -31119675 - ORR1E LTR MaLR -3 367 207 3 1277 940 278 79 11 chr11 90724181 90724447 -31119409 + B4A SINE B4 1 284 -8 3 1277 514 314 46 161 chr11 90724447 90724480 -31119376 - ORR1E LTR MaLR -164 206 197 3 1277 453 19 0 0 chr11 90724480 90724534 -31119322 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1277 551 314 46 158 chr11 90724534 90724745 -31119111 - ORR1E LTR MaLR -150 209 1 3 1277 264 325 8 0 chr11 90724758 90724884 -31118972 - HERVL74-int LTR ERVL -3982 1703 1577 3 1277 586 120 17 61 chr11 90725869 90725964 -31117892 + B1_Mur3 SINE Alu 40 136 -13 3 1277 212 0 0 35 chr11 90725964 90725993 -31117863 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 3 1277 586 120 17 61 chr11 90725993 90726012 -31117844 + B1_Mur3 SINE Alu 137 149 0 3 1277 14489 13 25 27 chr11 90726126 90727783 -31116073 - L1Md_A LINE L1 0 6582 4889 3 1277 228 183 46 77 chr11 90727783 90727848 -31116008 + RMER20A LTR ERVK 186 248 -268 3 1277 14489 13 25 27 chr11 90727848 90728707 -31115149 - L1Md_A LINE L1 0 4888 4009 3 1277 463 234 189 0 chr11 90728783 90728894 -31114962 + RSINE1 SINE B4 3 134 -31 3 1277 420 20 0 0 chr11 90728900 90728949 -31114907 + (CTAA)n Simple_repeat Simple_repeat 4 52 0 3 1277 1725 226 63 100 chr11 90729367 90730098 -31113758 - Lx7 LINE L1 -15 7681 6978 3 1277 2325 128 65 5 chr11 90730188 90730558 -31113298 - ORR1B1 LTR MaLR -2 392 1 3 1277 23 33 0 0 chr11 90730762 90730792 -31113064 + AT_rich Low_complexity Low_complexity 1 30 0 3 1277 241 188 38 51 chr11 90730793 90730950 -31112906 + (TATAA)n Simple_repeat Simple_repeat 1 155 0 3 1277 1220 34 7 0 chr11 90731050 90731196 -31112660 - B1_Mm SINE Alu 0 147 1 3 1277 345 284 103 81 chr11 90731705 90731939 -31111917 + LTR41 LTR ERVL 529 767 -1 3 1277 186 43 0 0 chr11 90732927 90732950 -31110906 + (TTC)n Simple_repeat Simple_repeat 2 24 0 3 1277 21 0 0 0 chr11 90733357 90733378 -31110478 + AT_rich Low_complexity Low_complexity 1 21 0 3 1277 21 71 0 0 chr11 90733432 90733474 -31110382 + AT_rich Low_complexity Low_complexity 1 42 0 3 1277 189 344 16 0 chr11 90733529 90733590 -31110266 - L2b LINE L2 -212 3163 3102 3 1277 387 0 0 0 chr11 90734332 90734375 -31109481 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1277 563 108 0 11 chr11 90734462 90734556 -31109300 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1277 1724 159 0 96 chr11 90734556 90734911 -31108945 + ORR1A3 LTR MaLR 5 325 -1 3 1277 561 68 0 0 chr11 90734911 90734985 -31108871 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 3 1277 8581 7 0 1 chr11 90735403 90736572 -31107284 - L1Md_T LINE L1 0 6582 5415 3 1277 868 181 170 0 chr11 90736572 90736760 -31107096 - URR1B DNA MER1_type -5 220 1 3 1277 686 266 123 27 chr11 90736768 90737232 -31106624 - L1MC LINE L1 -598 5735 5223 3 1277 268 248 153 25 chr11 90737241 90737444 -31106412 - L1M4 LINE L1 -2635 3511 3283 3 1277 2653 26 0 6 chr11 90738412 90738724 -31105132 + L1Md_F2 LINE L1 6261 6570 -12 3 1277 1640 187 44 58 chr11 90740756 90741119 -31102737 - ORR1C1 LTR MaLR 0 378 21 3 1277 413 240 70 31 chr11 90741213 90741276 -31102580 - MLT1A1 LTR MaLR -5 403 340 3 1277 405 0 0 0 chr11 90741276 90741321 -31102535 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1277 413 240 70 31 chr11 90741321 90741386 -31102470 - MLT1A1 LTR MaLR -69 339 270 3 1277 239 324 18 9 chr11 90741495 90741604 -31102252 - RMER15 LTR ERVL -14 561 452 3 1277 834 312 111 28 chr11 90741974 90742505 -31101351 - Lx8 LINE L1 -2 7471 6897 3 1277 1672 251 40 12 chr11 90742509 90742909 -31100947 - MTD LTR MaLR -8 411 1 3 1277 718 280 40 18 chr11 90743014 90743236 -31100620 - Lx8 LINE L1 -656 6817 6591 3 1277 2553 206 91 56 chr11 90743312 90744039 -31099817 + RLTR40 LTR ERVK 21 772 -45 3 1277 839 254 56 8 chr11 90744091 90744325 -31099531 - Lx8 LINE L1 -952 6521 6277 3 1277 232 162 0 171 chr11 90744518 90744600 -31099256 + URR1A DNA MER1_type 77 144 -82 3 1277 227 311 136 24 chr11 90744917 90745042 -31098814 - MLT1J1 LTR MaLR 0 444 306 3 1277 340 329 137 19 chr11 90745084 90745290 -31098566 - MLT1J1 LTR MaLR -239 205 17 3 1277 850 331 42 73 chr11 90746517 90746898 -31096958 + MTEa LTR MaLR 10 378 -1 3 1277 21 0 0 0 chr11 90747276 90747297 -31096559 + AT_rich Low_complexity Low_complexity 1 21 0 3 1277 21 57 0 0 chr11 90747522 90747557 -31096299 + AT_rich Low_complexity Low_complexity 1 35 0 3 1277 895 264 19 9 chr11 90747570 90747780 -31096076 - ID_B1 SINE B4 -7 217 6 3 1277 585 0 0 0 chr11 90747953 90748018 -31095838 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1277 616 12 12 12 chr11 90748081 90748163 -31095693 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1277 200 260 40 40 chr11 90749094 90749170 -31094686 + L2 LINE L2 1863 1938 -1481 3 1277 4738 34 0 0 chr11 90749281 90749833 -31094023 + L1Md_F2 LINE L1 6017 6568 -14 3 1277 31 0 0 0 chr11 90749870 90749901 -31093955 + AT_rich Low_complexity Low_complexity 1 31 0 3 1277 1780 222 64 8 chr11 90749906 90750378 -31093478 + Lx7 LINE L1 6037 6534 -1162 3 1277 917 154 25 121 chr11 90750399 90750680 -31093176 + Lx7 LINE L1 7443 7696 0 3 1277 627 276 103 29 chr11 90750874 90751146 -31092710 - B4A SINE B4 0 292 1 3 1277 184 97 81 0 chr11 90751998 90752060 -31091796 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1277 733 244 31 115 chr11 90753494 90753873 -31089983 + RLTR46 LTR ERVK 1 357 0 3 1277 225 83 0 0 chr11 90754034 90754070 -31089786 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1277 24 0 0 0 chr11 90754509 90754533 -31089323 + AT_rich Low_complexity Low_complexity 1 24 0 3 1277 189 107 0 0 chr11 90755958 90755986 -31087870 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1277 285 323 81 40 chr11 90756204 90756378 -31087478 + MER113A DNA MER1_type 2 182 -132 3 1277 477 0 0 0 chr11 90756764 90756817 -31087039 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1277 2111 42 8 0 chr11 90757456 90757715 -31086141 + L1Md_F3 LINE L1 6322 6582 -2 3 1277 4575 62 2 14 chr11 90757779 90758370 -31085486 - L1_Mus1 LINE L1 0 6567 5984 3 1277 1555 21 0 0 chr11 90758420 90758610 -31085246 + L1_Mus3 LINE L1 5631 5820 -818 3 1277 530 223 19 0 chr11 90758613 90758716 -31085140 + B1_Mur1 SINE Alu 38 142 -7 4 1277 194 146 0 40 chr11 90758716 90758766 -31085090 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1277 3328 122 18 4 chr11 90758852 90759352 -31084504 - Lx LINE L1 -3 6651 6145 4 1277 564 249 138 30 chr11 90759565 90759768 -31084088 - MLT1D LTR MaLR 0 505 281 4 1277 5339 95 0 0 chr11 90759788 90760565 -31083291 + L1_Mm LINE L1 4301 5077 -806 4 1277 1188 292 33 7 chr11 90760589 90760889 -31082967 - ORR1E LTR MaLR -46 313 6 4 1277 21 0 0 0 chr11 90761322 90761343 -31082513 + AT_rich Low_complexity Low_complexity 1 21 0 4 1277 24 0 0 0 chr11 90761564 90761588 -31082268 + AT_rich Low_complexity Low_complexity 1 24 0 4 1277 24 32 0 0 chr11 90762407 90762438 -31081418 + AT_rich Low_complexity Low_complexity 1 31 0 4 1277 1287 191 139 6 chr11 90762696 90763013 -31080843 + RMER19B LTR ERVK 303 661 -241 4 1277 3054 17 43 0 chr11 90763041 90763393 -31080463 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1277 33925 25 24 2 chr11 90763393 90767524 -31076332 + IAPEz-int LTR ERVK 8 4229 -2252 4 1277 14155 24 1 3 chr11 90767519 90769220 -31074636 + IAPEz-int LTR ERVK 4784 6481 0 4 1277 3054 17 43 0 chr11 90769220 90769572 -31074284 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1277 727 208 13 7 chr11 90769572 90769722 -31074134 + RMER19C LTR ERVK 461 611 0 4 1277 225 65 0 0 chr11 90769861 90769892 -31073964 + RMER19C LTR ERVK 581 611 0 4 1277 276 91 0 0 chr11 90770866 90770910 -31072946 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1277 1839 134 67 26 chr11 90770910 90771223 -31072633 - ORR1A4 LTR MaLR -3 326 1 4 1277 390 42 0 0 chr11 90771225 90771273 -31072583 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1277 496 322 20 7 chr11 90771273 90771423 -31072433 - B4A SINE B4 -23 269 118 4 1277 717 239 19 80 chr11 90771638 90771902 -31071954 - L1MA4 LINE L1 -374 5926 5679 4 1277 736 326 61 69 chr11 90771908 90772485 -31071371 + BLACKJACK DNA AcHobo 1053 1624 -1320 4 1277 215 170 0 21 chr11 90772511 90772559 -31071297 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 4 1277 8042 149 28 8 chr11 90772597 90774421 -31069435 + Lx4B LINE L1 5186 7055 -3 4 1277 457 251 12 0 chr11 90774450 90774617 -31069239 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 1277 875 225 21 123 chr11 90774667 90774802 -31069054 - MTD LTR MaLR -15 404 306 4 1277 1433 238 60 11 chr11 90774802 90775155 -31068701 + ORR1D2 LTR MaLR 1 370 0 4 1277 875 256 45 181 chr11 90775155 90775411 -31068445 - MTD LTR MaLR -100 319 75 4 1277 577 110 10 10 chr11 90775419 90775520 -31068336 + (CATA)n Simple_repeat Simple_repeat 4 104 0 4 1277 52 0 0 0 chr11 90775677 90775729 -31068127 + AT_rich Low_complexity Low_complexity 1 52 0 4 1277 952 75 0 50 chr11 90775729 90775870 -31067986 + B1_Mus1 SINE Alu 15 148 0 4 1277 483 324 138 47 chr11 90775862 90775943 -31067913 + BLACKJACK DNA AcHobo 1957 2034 -910 4 1277 378 284 70 6 chr11 90775943 90776099 -31067757 + MER5A1 DNA MER1_type 1 166 0 4 1277 483 324 138 47 chr11 90776099 90776719 -31067137 + BLACKJACK DNA AcHobo 2035 2722 -222 4 1277 2143 136 9 0 chr11 90777253 90777577 -31066279 - ORR1A2 LTR MaLR 0 327 1 4 1277 296 226 32 21 chr11 90777604 90777699 -31066157 + BLACKJACK DNA AcHobo 2788 2883 -61 4 1277 207 349 0 0 chr11 90778087 90778150 -31065706 + G-rich Low_complexity Low_complexity 4 66 0 4 1277 3671 20 2 2 chr11 90778233 90778629 -31065227 + MTA_Mm LTR MaLR 1 396 0 4 1277 653 325 41 41 chr11 90779307 90779525 -31064331 - B4A SINE B4 -73 219 2 4 1277 6363 40 4 0 chr11 90780712 90781429 -31062427 + L1Md_F2 LINE L1 5861 6580 -2 4 1277 3574 45 0 12 chr11 90781743 90782148 -31061708 - MTB LTR MaLR 0 400 1 4 1277 285 98 0 0 chr11 90783329 90783370 -31060486 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 4 1277 416 369 49 7 chr11 90783400 90783542 -31060314 - RSINE1 SINE B4 -14 151 4 4 1277 373 353 101 19 chr11 90783566 90783774 -31060082 + LTR16B2 LTR ERVL 137 361 -101 4 1277 2109 159 20 69 chr11 90784023 90784429 -31059427 - ORR1B1 LTR MaLR -8 386 1 4 1277 190 389 9 26 chr11 90784717 90784833 -31059023 - MIR SINE MIR -21 241 128 4 1277 249 300 69 101 chr11 90785939 90786079 -31057777 + MTEb LTR MaLR 197 333 -46 4 1277 2675 162 32 16 chr11 90786079 90786519 -31057337 - Lx2 LINE L1 -1 6996 6550 4 1277 249 300 69 101 chr11 90786519 90786567 -31057289 + MTEb LTR MaLR 334 379 0 4 1277 189 0 0 0 chr11 90787540 90787561 -31056295 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1277 835 258 40 5 chr11 90789022 90789221 -31054635 - B3 SINE B2 -6 210 5 4 1277 834 278 122 21 chr11 90789233 90789593 -31054263 + MTE2a LTR MaLR 20 419 0 4 1277 435 228 187 0 chr11 90789614 90789737 -31054119 - B1_Mus2 SINE Alu 0 147 2 4 1277 332 325 38 0 chr11 90792655 90792735 -31051121 - B1F1 SINE Alu -66 83 1 4 1277 21 0 0 0 chr11 90792834 90792855 -31051001 + AT_rich Low_complexity Low_complexity 1 21 0 4 1277 378 0 0 0 chr11 90793183 90793225 -31050631 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1277 458 252 19 0 chr11 90793389 90793496 -31050360 - B3 SINE B2 0 216 108 4 1277 243 339 32 95 chr11 90793671 90793860 -31049996 + MER58A DNA MER1_type 47 223 -1 4 1277 736 304 54 30 chr11 90794492 90794772 -31049084 - B4A SINE B4 0 292 3 4 1277 337 286 94 13 chr11 90794774 90794923 -31048933 - MLT1A LTR MaLR -212 162 2 4 1277 1036 245 38 15 chr11 90795396 90795661 -31048195 + B4A SINE B4 4 274 -18 4 1277 221 0 0 33 chr11 90795971 90796001 -31047855 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1277 513 282 18 0 chr11 90796023 90796133 -31047723 - ID_B1 SINE B4 -29 195 84 4 1277 32 95 0 0 chr11 90796499 90796594 -31047262 + AT_rich Low_complexity Low_complexity 1 95 0 4 1277 429 103 0 0 chr11 90796961 90797029 -31046827 + (TCCC)n Simple_repeat Simple_repeat 2 69 0 4 1277 237 250 17 0 chr11 90797036 90797096 -31046760 + CT-rich Low_complexity Low_complexity 4 64 0 4 1277 470 17 17 0 chr11 90797113 90797172 -31046684 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1277 280 317 0 90 chr11 90797173 90797284 -31046572 - PB1D10 SINE Alu -16 101 1 4 1277 6453 38 71 71 chr11 90797371 90797571 -31046285 + L1_Mm LINE L1 4668 4881 -1002 4 1277 232 167 46 77 chr11 90797571 90797636 -31046220 - RMER20A LTR ERVK -268 248 186 4 1277 6453 38 71 71 chr11 90797636 90798289 -31045567 + L1_Mm LINE L1 4882 5585 -298 4 1277 8661 43 1 5 chr11 90798290 90799290 -31044566 + L1Md_F2 LINE L1 5587 6582 0 4 1277 234 225 132 36 chr11 90799294 90799377 -31044479 + MLT1J LTR MaLR 376 466 -46 4 1277 425 306 75 81 chr11 90799527 90799687 -31044169 + LTR33A_ LTR ERVL 30 188 -343 4 1277 509 0 16 0 chr11 90800787 90800848 -31043008 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1277 255 23 68 0 chr11 90801126 90801170 -31042686 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1277 2241 190 54 25 chr11 90801286 90801767 -31042089 + Lx3C LINE L1 6482 6976 0 4 1277 1130 54 7 0 chr11 90802340 90802489 -31041367 - L1Md_F2 LINE L1 0 6582 6433 4 1277 396 332 103 55 chr11 90804471 90804870 -31038986 + L2 LINE L2 2091 2508 -911 4 1277 1180 71 0 0 chr11 90805032 90805172 -31038684 - B1_Mus1 SINE Alu -5 143 4 4 1277 2690 179 84 6 chr11 90805263 90805786 -31038070 - RMER15 LTR ERVL -2 573 10 4 1277 291 239 22 175 chr11 90806009 90806146 -31037710 - MLT1A1 LTR MaLR -290 118 3 4 1277 419 255 49 56 chr11 90806283 90806445 -31037411 + MTC LTR MaLR 244 404 -17 4 1277 1806 305 57 31 chr11 90806461 90807181 -31036675 + Lx8 LINE L1 6735 7473 0 4 1277 182 385 42 25 chr11 90807183 90807303 -31036553 + MER5B DNA MER1_type 57 178 0 4 1277 361 268 61 10 chr11 90807784 90807882 -31035974 + MLT1A LTR MaLR 7 109 -256 4 1277 976 283 42 22 chr11 90807966 90808258 -31035598 + B4 SINE B4 10 292 0 4 1277 439 311 62 21 chr11 90808321 90808515 -31035341 + MLT1A LTR MaLR 160 361 -13 4 1277 404 323 92 75 chr11 90808733 90809047 -31034809 + MTEa LTR MaLR 4 334 -45 4 1277 515 278 9 0 chr11 90809645 90809760 -31034096 - B1F SINE Alu -28 121 6 4 1277 243 248 23 131 chr11 90809657 90809787 -31034069 - MT2B2 LTR ERVL -321 263 148 4 1277 593 357 12 20 chr11 90811558 90811812 -31032044 - MLT1F LTR MaLR -53 495 244 4 1277 450 0 0 0 chr11 90811951 90812001 -31031855 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1277 414 0 0 0 chr11 90812001 90812046 -31031810 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1277 234 0 0 0 chr11 90812130 90812156 -31031700 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1277 358 266 139 51 chr11 90812379 90812677 -31031179 + MLT1B LTR MaLR 11 378 -12 4 1277 972 115 0 0 chr11 90812760 90812899 -31030957 - B1_Mus1 SINE Alu -1 147 9 4 1277 222 335 66 13 chr11 90813104 90813255 -31030601 + MIRb SINE MIR 2 160 -108 4 1277 24 53 0 0 chr11 90814287 90814325 -31029531 + AT_rich Low_complexity Low_complexity 1 38 0 4 1277 22 35 0 0 chr11 90814427 90814456 -31029400 + AT_rich Low_complexity Low_complexity 1 29 0 4 1277 1362 259 46 22 chr11 90814524 90814891 -31028965 + MTE2a LTR MaLR 4 379 0 4 1277 849 176 168 15 chr11 90815101 90815297 -31028559 - URR1A DNA MER1_type 0 226 1 4 1277 973 302 47 16 chr11 90816134 90816390 -31027466 - B4 SINE B4 -2 290 27 4 1277 228 356 0 0 chr11 90816345 90816404 -31027452 - BC1_Mm scRNA scRNA -82 70 12 4 1277 220 358 0 0 chr11 90816449 90816516 -31027340 + (CATG)n Simple_repeat Simple_repeat 1 67 0 4 1277 614 25 12 0 chr11 90816520 90816600 -31027256 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1277 441 0 0 0 chr11 90817361 90817410 -31026446 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1277 475 358 0 7 chr11 90817521 90817645 -31026211 + RSINE1 SINE B4 1 123 -42 4 1277 828 74 0 0 chr11 90817645 90817766 -31026090 + (TC)n Simple_repeat Simple_repeat 1 121 0 4 1277 193 29 59 0 chr11 90817811 90817845 -31026011 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1277 2385 171 54 5 chr11 90818019 90818443 -31025413 + Lx2B LINE L1 6556 7000 0 5 1277 415 321 33 74 chr11 90818597 90818679 -31025177 - L1MDb LINE L1 -5281 1128 1058 5 1277 336 319 34 42 chr11 90818679 90818797 -31025059 - PB1 SINE Alu -10 117 1 5 1277 415 321 33 74 chr11 90818797 90819050 -31024806 - L1MDb LINE L1 -5352 1057 807 5 1277 1366 99 139 21 chr11 90819076 90819313 -31024543 - RLTR9E LTR ERVK -144 265 1 5 1277 337 248 84 98 chr11 90819553 90819696 -31024160 - L1M3 LINE L1 -3021 3122 2982 5 1277 415 284 18 0 chr11 90819699 90819808 -31024048 + B3 SINE B2 1 111 -105 5 1277 3116 63 203 9 chr11 90819808 90820237 -31023619 - RLTR1B LTR ERV1 0 512 1 5 1277 338 282 49 41 chr11 90820237 90820249 -31023607 + B2_Mm2 SINE B2 116 123 -72 5 1277 11400 17 0 0 chr11 90820249 90821501 -31022355 - MMERGLN-int LTR ERV1 -12 7544 6293 5 1277 2982 39 0 6 chr11 90821501 90821840 -31022016 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1277 56377 21 17 7 chr11 90821840 90828248 -31015608 - IAPEz-int LTR ERVK 0 6481 8 5 1277 2982 39 0 6 chr11 90828248 90828587 -31015269 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 159 48239 19 1 1 chr11 90828587 90834876 -31008980 - MMERGLN-int LTR ERV1 -1258 6298 8 5 1278 2908 66 200 9 chr11 90834883 90835313 -31008543 - RLTR1B LTR ERV1 0 512 1 5 1278 388 232 133 31 chr11 90835313 90835403 -31008453 + B3 SINE B2 108 210 -6 5 1278 756 86 248 0 chr11 90835559 90835676 -31008180 - B1_Mus2 SINE Alu 0 147 2 5 1278 216 0 0 0 chr11 90835678 90835702 -31008154 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1278 917 303 81 22 chr11 90835713 90836334 -31007522 - L1M3 LINE L1 -3306 2834 2178 5 1278 369 0 0 0 chr11 90836424 90836465 -31007391 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 5 1278 1406 238 138 15 chr11 90836470 90836948 -31006908 - Lx9 LINE L1 -26 7618 7082 5 1278 1496 193 9 18 chr11 90837342 90837674 -31006182 - Lx9 LINE L1 -560 7084 6756 5 1278 771 150 4 20 chr11 90837781 90838022 -31005834 + CT-rich Low_complexity Low_complexity 1 237 0 5 1278 567 240 139 0 chr11 90839745 90839874 -31003982 + B3A SINE B2 7 153 -45 5 1278 1296 90 6 3 chr11 90839878 90840204 -31003652 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 5 1278 423 98 0 0 chr11 90840204 90840265 -31003591 + (CTCA)n Simple_repeat Simple_repeat 4 64 0 5 1278 464 308 18 25 chr11 90841136 90841299 -31002557 + RSINE1 SINE B4 4 165 0 5 1278 301 259 111 0 chr11 90841318 90841399 -31002457 + HAL1-3A_ME LINE L1 1976 2065 -793 5 1278 3500 132 30 64 chr11 90841604 90842226 -31001630 - MT2B LTR ERVL 0 601 1 5 1278 927 119 16 121 chr11 90842354 90842536 -31001320 + ORR1A3 LTR MaLR 1 163 -163 5 1278 382 164 0 0 chr11 90842531 90842592 -31001264 + ORR1A3 LTR MaLR 359 419 0 5 1278 264 333 0 14 chr11 90842646 90842662 -31001194 + ID4_ SINE ID 4 72 -11 5 1278 280 208 0 19 chr11 90842662 90842716 -31001140 + tRNA-Ala-GCY_ tRNA tRNA 14 66 -9 5 1278 218 370 12 12 chr11 90842716 90842728 -31001128 + ID SINE ID 4 85 -139 5 1278 1035 321 32 0 chr11 90843860 90844140 -30999716 + B4 SINE B4 2 290 -2 5 1278 227 298 131 69 chr11 90844045 90844175 -30999681 - LTR75_1 LTR ERV1 -136 410 273 5 1278 328 359 65 46 chr11 90844505 90844721 -30999135 - MLT1F LTR MaLR -4 544 325 5 1278 226 65 47 31 chr11 90844739 90844803 -30999053 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 5 1278 593 295 53 55 chr11 90844870 90845376 -30998480 + L1MD LINE L1 2197 2701 -3445 5 1278 210 243 39 39 chr11 90845528 90845605 -30998251 - MER5A DNA MER1_type -86 103 27 5 1278 7931 93 36 7 chr11 90846364 90848306 -30995550 + L1_Mus3 LINE L1 4640 6635 -3 5 1278 11461 32 0 2 chr11 90848551 90850651 -30993205 - L1Md_F2 LINE L1 -2 6580 4485 5 1278 586 61 20 20 chr11 90850735 90850835 -30993021 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 5 1278 485 221 11 0 chr11 90850923 90851018 -30992838 + MTC LTR MaLR 2 97 -324 5 1278 704 99 10 0 chr11 90851051 90851152 -30992704 - B1_Mus2 SINE Alu 0 147 46 5 1278 325 289 157 16 chr11 90851222 90851383 -30992473 + MTC LTR MaLR 178 368 -51 5 1278 898 109 7 7 chr11 90851383 90851530 -30992326 + (TTCTC)n Simple_repeat Simple_repeat 4 150 0 5 1278 1864 71 0 0 chr11 90851530 90851933 -30991923 - L1_Mus1 LINE L1 0 6567 6329 5 1278 390 300 0 10 chr11 90851976 90852077 -30991779 - ID_B1 SINE B4 -30 194 95 5 1278 323 256 93 0 chr11 90852128 90852214 -30991642 - BC1_Mm scRNA scRNA -58 94 1 5 1278 238 321 24 0 chr11 90853176 90853260 -30990596 + LTR81C LTR ERV1? 668 753 -400 5 1278 761 318 0 5 chr11 90853295 90853497 -30990359 + B3 SINE B2 2 202 -14 5 1278 222 118 0 0 chr11 90853497 90853531 -30990325 + (ATG)n Simple_repeat Simple_repeat 2 35 0 5 1278 1685 177 74 29 chr11 90853531 90853910 -30989946 + RMER16 LTR ERVK 12 533 0 5 1278 759 100 0 0 chr11 90853910 90854020 -30989836 + (ATG)n Simple_repeat Simple_repeat 3 112 0 5 1278 227 354 73 89 chr11 90854043 90854167 -30989689 + LTR81C LTR ERV1? 1005 1126 -267 5 1278 549 88 0 0 chr11 90854559 90854639 -30989217 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 5 1278 453 310 16 27 chr11 90854640 90854804 -30989052 - B3A SINE B2 -29 187 33 5 1278 198 0 0 0 chr11 90854913 90854935 -30988921 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1278 351 0 0 0 chr11 90854946 90854985 -30988871 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1278 249 340 69 10 chr11 90855524 90855625 -30988231 + MIRc SINE MIR 8 114 -154 5 1278 288 111 0 0 chr11 90855788 90855842 -30988014 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1278 319 249 40 34 chr11 90856988 90857163 -30986693 + (TATG)n Simple_repeat Simple_repeat 3 178 0 5 1278 249 310 14 0 chr11 90857186 90857257 -30986599 - B4A SINE B4 -28 264 193 5 1278 671 255 31 97 chr11 90857334 90857560 -30986296 + MTEa LTR MaLR 7 217 -162 5 1278 513 0 0 0 chr11 90857569 90857626 -30986230 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1278 777 285 105 15 chr11 90858220 90858487 -30985369 + B4A SINE B4 2 292 0 5 1278 400 209 94 55 chr11 90858514 90858716 -30985140 - RMER17D LTR ERVK -445 444 235 5 1278 37771 24 4 8 chr11 90858716 90864863 -30978993 - L1Md_T LINE L1 -26 6556 440 5 1278 382 143 48 0 chr11 90866561 90866645 -30977211 + GA-rich Low_complexity Low_complexity 3 90 0 5 1278 536 287 93 10 chr11 90867751 90867955 -30975901 - ID_B1 SINE B4 0 224 4 5 1278 655 354 32 82 chr11 90868735 90868784 -30975072 + MLT1B LTR MaLR 2 50 -340 5 1278 1092 91 89 28 chr11 90868784 90868964 -30974892 - B2_Mm2 SINE B2 -2 193 3 5 1278 655 354 32 82 chr11 90868964 90869314 -30974542 + MLT1B LTR MaLR 51 381 -9 5 1278 251 246 123 0 chr11 90870194 90870259 -30973597 - ID4_ SINE ID -10 73 1 5 1278 254 310 11 33 chr11 90870285 90870375 -30973481 - B1F2 SINE Alu -57 92 5 5 1278 180 308 139 63 chr11 90871165 90871532 -30972324 + L2 LINE L2 2564 2958 -461 5 1278 213 39 0 0 chr11 90871552 90871578 -30972278 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1278 25 0 0 0 chr11 90871882 90871907 -30971949 + AT_rich Low_complexity Low_complexity 1 25 0 5 1278 256 312 99 46 chr11 90872217 90872368 -30971488 - MER5A1 DNA MER1_type -7 159 1 5 1278 30535 77 15 3 chr11 90872679 90877627 -30966229 + L1Md_F2 LINE L1 576 5585 -298 5 1278 7604 67 0 21 chr11 90877629 90878643 -30965213 + L1Md_F2 LINE L1 5588 6580 -2 5 1278 28 0 0 0 chr11 90878643 90878671 -30965185 + AT_rich Low_complexity Low_complexity 1 28 0 5 1278 551 272 47 23 chr11 90878671 90878799 -30965057 + RSINE1 SINE B4 4 134 -31 5 1278 1282 13 0 13 chr11 90879614 90879771 -30964085 + L1Md_A LINE L1 6428 6582 0 5 1278 1101 281 55 21 chr11 90880982 90881452 -30962404 - L1MA7 LINE L1 -275 6016 5531 5 1278 957 103 0 0 chr11 90881669 90881805 -30962051 - B1_Mm SINE Alu -1 146 11 5 1278 33775 35 0 0 chr11 90881806 90887234 -30956622 + L1Md_T LINE L1 66 5589 -297 5 1278 8932 8 0 4 chr11 90887234 90888234 -30955622 + L1Md_T LINE L1 5590 6585 0 5 1278 45 19 0 0 chr11 90888234 90888286 -30955570 + AT_rich Low_complexity Low_complexity 1 52 0 5 1278 21 0 0 0 chr11 90888309 90888330 -30955526 + AT_rich Low_complexity Low_complexity 1 21 0 5 1278 904 181 0 0 chr11 90888337 90888486 -30955370 - B1_Mur3 SINE Alu 0 149 1 5 1278 386 283 0 0 chr11 90888486 90888578 -30955278 - 4.5SRNA scRNA scRNA -2 92 1 5 1278 207 0 0 0 chr11 90888588 90888611 -30955245 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1278 1934 72 52 35 chr11 90888625 90888912 -30954944 - L1Md_F2 LINE L1 -12 6570 6279 5 1278 1421 55 5 20 chr11 90888935 90889160 -30954696 - L1Md_F2 LINE L1 0 6582 6383 5 1278 407 247 82 44 chr11 90889192 90889374 -30954482 - L1M4c LINE L1 -3828 2554 2366 5 1278 715 309 60 28 chr11 90889641 90890104 -30953752 - L1M4c LINE L1 -4395 1989 1512 5 1278 260 328 85 17 chr11 90890306 90890351 -30953505 - ID_B1 SINE B4 -97 127 2 5 1278 277 274 55 0 chr11 90890351 90890424 -30953432 - ID4_ SINE ID -5 78 2 5 1278 863 144 14 7 chr11 90890515 90890655 -30953201 - B1_Mus1 SINE Alu -5 143 3 5 1278 408 217 0 15 chr11 90890682 90890813 -30953043 - Lx9 LINE L1 0 7644 7516 5 1278 414 0 0 0 chr11 90890818 90890864 -30952992 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1278 279 0 0 0 chr11 90890864 90890894 -30952962 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1278 438 53 0 0 chr11 90890972 90891029 -30952827 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 5 1278 638 317 44 9 chr11 90891212 90891441 -30952415 - LTR82A LTR ERVL -635 237 1 5 1278 313 285 75 88 chr11 90891445 90891818 -30952038 + L1M5 LINE L1 3247 3614 -2532 5 1278 786 97 0 0 chr11 90891896 90892009 -30951847 + (TC)n Simple_repeat Simple_repeat 2 114 0 5 1278 882 0 0 0 chr11 90892009 90892107 -30951749 + (TTTCC)n Simple_repeat Simple_repeat 4 101 0 5 1278 211 28 0 53 chr11 90892354 90892392 -30951464 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1278 299 324 90 0 chr11 90892533 90892644 -30951212 - MER58B DNA MER1_type -45 296 176 5 1278 401 286 36 92 chr11 90893081 90893277 -30950579 - B3A SINE B2 -10 185 1 5 1278 590 251 46 146 chr11 90895716 90895935 -30947921 - B3A SINE B2 -1 197 1 5 1278 603 300 19 0 chr11 90896383 90896543 -30947313 + B3A SINE B2 2 164 -34 5 1278 25 0 0 0 chr11 90896920 90896945 -30946911 + AT_rich Low_complexity Low_complexity 1 25 0 5 1278 208 111 77 11 chr11 90897692 90897783 -30946073 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 1278 926 242 0 21 chr11 90898272 90898466 -30945390 - MTD LTR MaLR -229 190 1 6 1278 384 246 15 92 chr11 90899388 90899518 -30944338 - B3 SINE B2 -13 203 84 6 1278 269 26 26 0 chr11 90900242 90900280 -30943576 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 6 1278 24 0 0 0 chr11 90900458 90900482 -30943374 + AT_rich Low_complexity Low_complexity 1 24 0 6 1278 198 0 0 0 chr11 90900595 90900617 -30943239 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1278 1035 224 51 149 chr11 90901801 90902290 -30941566 - RLTR12B LTR ERVK -46 482 42 6 1278 192 77 0 0 chr11 90902335 90902361 -30941495 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1278 449 300 0 0 chr11 90902369 90902469 -30941387 - PB1D10 SINE Alu -11 106 7 6 1278 373 287 10 29 chr11 90903686 90903790 -30940066 + MTEb LTR MaLR 6 107 -272 6 1278 1670 234 25 18 chr11 90903790 90904238 -30939618 + Lx8 LINE L1 5314 5764 -116 6 1278 384 22 0 0 chr11 90904238 90904283 -30939573 + (TTA)n Simple_repeat Simple_repeat 3 47 0 6 1278 366 235 52 38 chr11 90904284 90904468 -30939388 - RMER4B LTR ERVK -16 569 348 6 1278 558 0 0 0 chr11 90904524 90904586 -30939270 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1278 531 204 131 0 chr11 90904586 90904723 -30939133 - RMER4B LTR ERVK -430 155 1 6 1278 400 252 21 41 chr11 90904723 90904933 -30938923 + Lx8 LINE L1 5759 5959 -1514 6 1278 27 0 0 0 chr11 90905186 90905213 -30938643 + AT_rich Low_complexity Low_complexity 1 27 0 6 1278 255 298 156 71 chr11 90905329 90905470 -30938386 - B3 SINE B2 -37 179 27 6 1278 1552 11 0 0 chr11 90905472 90905653 -30938203 - L1Md_A LINE L1 0 6582 6402 6 1278 4595 4 0 0 chr11 90905653 90906185 -30937671 + L1Md_A LINE L1 5863 6394 -188 6 1278 2310 224 42 8 chr11 90906203 90906725 -30937131 - Lx6 LINE L1 -9 7451 6912 6 1278 658 318 78 74 chr11 90907026 90907160 -30936696 + MER90 LTR ERV1 27 165 -410 6 1278 756 61 0 0 chr11 90907160 90907258 -30936598 + (TC)n Simple_repeat Simple_repeat 2 99 0 6 1278 658 318 78 74 chr11 90907258 90907647 -30936209 + MER90 LTR ERV1 166 552 -23 6 1278 334 284 40 47 chr11 90907670 90907818 -30936038 - B1F1 SINE Alu -1 148 2 6 1278 3215 24 39 3 chr11 90908652 90909034 -30934822 + MTA_Mm LTR MaLR 1 396 0 6 1278 9136 35 3 2 chr11 90909034 90910129 -30933727 + MTA_Mm-int LTR MaLR 1 1096 -2 6 1278 3196 24 40 3 chr11 90910131 90910511 -30933345 + MTA_Mm LTR MaLR 1 394 -2 6 1278 22 0 0 0 chr11 90911352 90911374 -30932482 + AT_rich Low_complexity Low_complexity 1 22 0 6 1278 246 323 0 0 chr11 90911448 90911510 -30932346 - Charlie5 DNA MER1_type -2559 65 4 6 1278 213 371 12 76 chr11 90911915 90912087 -30931769 + MIRb SINE MIR 56 216 -52 6 1278 180 97 0 0 chr11 90912100 90912131 -30931725 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 6 1278 1159 75 0 0 chr11 90912134 90912281 -30931575 - B1_Mur4 SINE Alu 0 150 4 6 1278 869 116 28 48 chr11 90913512 90913657 -30930199 + B1_Mur3 SINE Alu 1 142 -7 6 1278 2616 184 30 78 chr11 90914739 90915381 -30928475 + RMER19C LTR ERVK 1 611 0 6 1278 658 286 109 69 chr11 90915454 90915758 -30928098 + MLT1A0 LTR MaLR 33 348 -17 6 1278 1774 168 13 38 chr11 90915835 90916226 -30927630 - L1_Mur3 LINE L1 -4021 1859 1479 6 1278 809 263 31 50 chr11 90916239 90916499 -30927357 + Lx6 LINE L1 7180 7434 -26 6 1278 431 331 6 61 chr11 90917797 90917961 -30925895 + RSINE1 SINE B4 5 159 -6 6 1278 267 31 0 0 chr11 90918049 90918081 -30925775 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1278 633 115 0 0 chr11 90919612 90919708 -30924148 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 6 1278 319 347 69 29 chr11 90919708 90919883 -30923973 - Tigger13a DNA MER2_type -217 554 373 6 1278 549 312 94 47 chr11 90919894 90920129 -30923727 - MLT1D LTR MaLR -10 495 250 6 1278 653 266 39 39 chr11 90920196 90920376 -30923480 + B3A SINE B2 1 180 -18 6 1278 21 0 0 0 chr11 90920389 90920410 -30923446 + AT_rich Low_complexity Low_complexity 1 21 0 6 1278 1166 193 14 5 chr11 90920555 90920768 -30923088 - URR1A DNA MER1_type -10 216 2 6 1278 327 49 0 0 chr11 90920964 90921005 -30922851 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1278 365 300 164 53 chr11 90921065 90921290 -30922566 + RMER15 LTR ERVL 313 562 -13 6 1278 214 286 28 70 chr11 90921447 90921590 -30922266 + MIR SINE MIR 67 203 -59 6 1278 23 0 0 0 chr11 90923244 90923267 -30920589 + AT_rich Low_complexity Low_complexity 1 23 0 6 1278 766 298 105 0 chr11 90923309 90923557 -30920299 + B4A SINE B4 1 274 -18 6 1278 204 182 0 0 chr11 90923990 90924034 -30919822 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1278 222 312 21 21 chr11 90924730 90924825 -30919031 - MIRb SINE MIR -77 191 97 6 1278 861 256 174 16 chr11 90924930 90925251 -30918605 - ORR1D1 LTR MaLR 0 374 3 6 1278 480 244 78 39 chr11 90925687 90925815 -30918041 + B1_Mm SINE Alu 9 141 -6 6 1278 910 147 96 21 chr11 90925815 90926003 -30917853 - RMER1C Other Other -194 1148 947 6 1278 639 159 0 0 chr11 90926032 90926145 -30917711 + CT-rich Low_complexity Low_complexity 1 113 0 6 1278 596 178 30 147 chr11 90926145 90926343 -30917513 + RMER1C Other Other 1157 1331 -11 6 1278 249 33 0 0 chr11 90927901 90927931 -30915925 + (CAG)n Simple_repeat Simple_repeat 1 30 0 6 1278 1119 314 50 13 chr11 90927940 90928482 -30915374 + L1MA4A LINE L1 5365 5926 -377 6 1278 219 69 0 0 chr11 90928487 90928516 -30915340 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1278 334 319 20 61 chr11 90929224 90929371 -30914485 - MLT1A1 LTR MaLR -254 154 14 6 1278 490 266 23 0 chr11 90929906 90930034 -30913822 + LTR33 LTR ERVL 385 515 0 6 1278 333 336 48 7 chr11 90930043 90930190 -30913666 - L1M5 LINE L1 -1267 4879 4727 6 1278 1817 283 193 28 chr11 90930196 90931412 -30912444 - Charlie1a DNA MER1_type 0 1455 39 6 1278 279 0 0 0 chr11 90931536 90931567 -30912289 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1278 7528 114 42 10 chr11 90932093 90932658 -30911198 - Lx2B LINE L1 -1 6999 6427 6 1278 387 0 0 0 chr11 90932658 90932701 -30911155 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1278 7528 114 42 10 chr11 90932701 90933334 -30910522 - Lx2B LINE L1 -574 6426 5762 6 1278 464 371 133 23 chr11 90934717 90935114 -30908742 + LTR16C LTR ERVL 43 483 -6 6 1278 466 273 35 21 chr11 90935205 90935347 -30908509 - RLTR23 LTR ERV1 0 430 287 6 1278 2326 316 66 20 chr11 90935734 90936818 -30907038 - Lx9 LINE L1 -156 7488 6210 6 1278 543 118 0 0 chr11 90936818 90936903 -30906953 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 1278 1007 359 53 30 chr11 90936903 90937056 -30906800 - Lx9 LINE L1 -1264 6209 6064 6 1278 234 0 0 0 chr11 90937808 90937834 -30906022 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1278 230 308 50 133 chr11 90938603 90938723 -30905133 - MT2B2 LTR ERVL -308 276 167 6 1278 363 327 18 0 chr11 90938623 90938645 -30905211 - ID_B1 SINE B4 -39 185 110 6 1278 384 275 0 0 chr11 90938645 90938725 -30905131 - PB1D10 SINE Alu -37 80 1 6 1278 395 312 65 48 chr11 90939067 90939286 -30904570 + MLT2B4 LTR ERVL 257 508 -48 6 1278 301 263 15 0 chr11 90939308 90939445 -30904411 + CT-rich Low_complexity Low_complexity 5 143 0 6 1278 279 0 0 0 chr11 90940256 90940287 -30903569 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1278 396 125 0 0 chr11 90941031 90941095 -30902761 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1278 606 297 72 17 chr11 90941659 90941950 -30901906 + RMER5 LTR ERV1 70 376 -158 6 1278 348 88 0 0 chr11 90941950 90942007 -30901849 + (T)n Simple_repeat Simple_repeat 1 57 0 6 1278 312 197 0 32 chr11 90942045 90942108 -30901748 + RMER5 LTR ERV1 408 468 -66 6 1278 668 180 0 21 chr11 90942663 90942805 -30901051 + L1_Rod LINE L1 4767 4905 -942 6 1278 263 161 18 0 chr11 90942930 90942986 -30900870 + GA-rich Low_complexity Low_complexity 2 58 0 6 1278 281 254 50 65 chr11 90943026 90943165 -30900691 + L1_Rod LINE L1 5410 5546 -301 6 1278 617 186 8 30 chr11 90943243 90943376 -30900480 - L1_Rod LINE L1 -435 5412 5283 6 1278 452 301 124 59 chr11 90944933 90945562 -30898294 - L1MD LINE L1 -2318 5564 4903 6 1278 219 69 0 0 chr11 90945564 90945593 -30898263 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1278 292 183 14 0 chr11 90945789 90945860 -30897996 + Lx9 LINE L1 7572 7643 -1 6 1278 1465 241 77 36 chr11 90945951 90946447 -30897409 - Lx9 LINE L1 -277 7367 6852 6 1278 329 307 0 0 chr11 90947115 90947190 -30896666 - B4 SINE B4 -2 290 216 6 1278 306 182 0 0 chr11 90947206 90947272 -30896584 + CT-rich Low_complexity Low_complexity 3 68 0 6 1278 779 292 50 33 chr11 90947291 90947316 -30896540 - B4A SINE B4 -46 246 222 6 1278 1290 80 0 0 chr11 90947316 90947492 -30896364 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 6 1278 995 235 47 14 chr11 90947492 90947707 -30896149 - B4 SINE B4 -71 221 2 6 1278 309 135 0 0 chr11 90948479 90948531 -30895325 + (T)n Simple_repeat Simple_repeat 1 52 0 6 1278 193 179 51 51 chr11 90948790 90948849 -30895007 + MER5A DNA MER1_type 56 114 -75 6 1278 287 73 9 111 chr11 90948852 90948960 -30894896 + A-rich Low_complexity Low_complexity 6 102 0 6 1278 3105 156 48 41 chr11 90949278 90949918 -30893938 + RMER6C LTR ERVK 46 690 0 6 1278 21 36 0 0 chr11 90950690 90950718 -30893138 + AT_rich Low_complexity Low_complexity 1 28 0 6 1278 28 29 0 0 chr11 90950959 90950994 -30892862 + AT_rich Low_complexity Low_complexity 1 35 0 6 1278 699 24 0 0 chr11 90951114 90951199 -30892657 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1278 306 0 0 0 chr11 90951199 90951232 -30892624 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1278 643 308 112 38 chr11 90951241 90951686 -30892170 - Lx9 LINE L1 -206 7438 6961 6 1278 2261 276 109 22 chr11 90951846 90952655 -30891201 + Lx6 LINE L1 6555 7433 -27 6 1278 456 51 0 0 chr11 90953184 90953243 -30890613 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1278 279 335 60 48 chr11 90953404 90953570 -30890286 - MLT1H LTR MaLR -379 170 3 6 1278 187 283 22 0 chr11 90954019 90954065 -30889791 + L2c LINE L2 3298 3344 -43 6 1278 1545 259 74 63 chr11 90954237 90954702 -30889154 + RLTR20B1 LTR ERVK 1 470 -93 6 1278 423 0 0 0 chr11 90954702 90954749 -30889107 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1278 1545 259 74 63 chr11 90954749 90954840 -30889016 + RLTR20B1 LTR ERVK 471 562 -1 6 1278 573 318 14 36 chr11 90954935 90955212 -30888644 - B4A SINE B4 -19 273 3 7 1278 1439 218 11 0 chr11 90955281 90955565 -30888291 - Lx5 LINE L1 -142 6908 6622 7 1278 424 260 19 19 chr11 90955704 90955730 -30888126 - B4 SINE B4 -5 287 262 7 1278 2129 148 35 43 chr11 90955730 90956125 -30887731 - ORR1B1 LTR MaLR 0 394 3 7 1278 424 260 19 19 chr11 90956125 90956204 -30887652 - B4 SINE B4 -31 261 183 7 1278 298 283 107 30 chr11 90957016 90957213 -30886643 + RMER15 LTR ERVL 343 554 -21 7 1278 198 0 0 0 chr11 90958633 90958655 -30885201 + (TTG)n Simple_repeat Simple_repeat 2 23 0 7 1278 348 288 76 9 chr11 90958665 90958770 -30885086 + RSINE1 SINE B4 44 155 -10 7 1278 193 374 22 0 chr11 90958897 90958988 -30884868 - MIR SINE MIR -145 117 25 7 1278 205 208 0 19 chr11 90959971 90960025 -30883831 + A-rich Low_complexity Low_complexity 3 55 0 7 1278 473 333 91 23 chr11 90960030 90960274 -30883582 + B4A SINE B4 1 292 0 7 1278 252 311 0 11 chr11 90960283 90960374 -30883482 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 1278 2845 237 101 25 chr11 90961443 90962206 -30881650 + RMER13A LTR ERVK 1 821 -39 7 1278 7097 50 42 2 chr11 90962338 90963443 -30880413 - L1Md_F2 LINE L1 -2 6580 5432 7 1278 25 0 0 0 chr11 90963472 90963497 -30880359 + AT_rich Low_complexity Low_complexity 1 25 0 7 1278 21 36 0 0 chr11 90963553 90963581 -30880275 + AT_rich Low_complexity Low_complexity 1 28 0 7 1279 430 295 121 34 chr11 90964771 90965069 -30878787 + L2a LINE L2 3042 3365 -61 7 1279 274 343 21 21 chr11 90965793 90965933 -30877923 + MER97c DNA MER1_type? 1 140 -950 7 1279 564 253 29 53 chr11 90966037 90966208 -30877648 - RMER30 DNA MER1_type -25 177 11 7 1279 2692 304 43 20 chr11 90966210 90967302 -30876554 + Lx8 LINE L1 6353 7469 -4 7 1279 413 271 44 29 chr11 90967322 90967459 -30876397 + Lx8 LINE L1 7180 7318 -155 7 1279 198 191 0 0 chr11 90967763 90967805 -30876051 + T-rich Low_complexity Low_complexity 1 42 0 7 1279 1190 68 0 0 chr11 90967806 90967952 -30875904 - B1_Mus1 SINE Alu -2 146 1 7 1279 961 275 93 67 chr11 90968181 90968685 -30875171 - RMER13A LTR ERVK -99 528 1 7 1279 446 179 27 0 chr11 90969067 90969179 -30874677 + Lx9 LINE L1 7528 7642 -2 7 1279 243 266 62 39 chr11 90969212 90969341 -30874515 - L2 LINE L2 -652 2767 2636 7 1279 287 319 50 16 chr11 90969429 90969550 -30874306 + MTE2b LTR MaLR 63 187 -192 7 1279 1940 106 3 0 chr11 90969772 90970065 -30873791 + L1_Mm LINE L1 5271 5564 -319 7 1279 407 331 15 22 chr11 90970485 90970621 -30873235 - ID_B1 SINE B4 -3 221 87 7 1279 351 0 0 0 chr11 90971455 90971494 -30872362 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1279 331 224 0 0 chr11 90971660 90971718 -30872138 - RSINE1 SINE B4 -105 60 3 7 1279 1303 221 175 17 chr11 90971951 90972305 -30871551 + MTC LTR MaLR 1 410 -11 7 1279 303 309 29 93 chr11 90972782 90972921 -30870935 + RMER10B LTR ERVL 269 398 0 7 1279 453 145 0 0 chr11 90973265 90973341 -30870515 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 1279 797 243 107 118 chr11 90973538 90973921 -30869935 + MTE2a LTR MaLR 1 379 0 7 1279 349 371 85 13 chr11 90974332 90974567 -30869289 - MLT1I LTR MaLR -156 255 4 7 1279 527 164 8 0 chr11 90975403 90975531 -30868325 + (TG)n Simple_repeat Simple_repeat 2 130 0 7 1279 537 345 84 55 chr11 90975532 90975833 -30868023 - B4A SINE B4 -11 281 4 7 1279 267 31 0 0 chr11 90975851 90975883 -30867973 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1279 187 235 71 29 chr11 90976605 90976675 -30867181 + MIRc SINE MIR 82 154 -114 7 1279 379 287 96 0 chr11 90977297 90977412 -30866444 + RSINE1 SINE B4 10 135 -30 7 1279 204 40 0 0 chr11 90977414 90977439 -30866417 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1279 315 96 0 0 chr11 90977440 90977492 -30866364 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1279 377 300 141 5 chr11 90977571 90977762 -30866094 - ID_B1 SINE B4 -4 220 4 7 1279 1667 124 124 0 chr11 90978623 90978914 -30864942 + IAPEY3_LTR LTR ERVK 1 327 -5 7 1279 255 229 208 25 chr11 90978917 90979021 -30864835 - Lx9 LINE L1 -25 7619 7500 7 1279 372 22 0 0 chr11 90979021 90979066 -30864790 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1279 255 229 208 25 chr11 90979066 90979158 -30864698 - Lx9 LINE L1 -145 7499 7388 7 1279 22 0 0 0 chr11 90979434 90979456 -30864400 + GC_rich Low_complexity Low_complexity 1 22 0 7 1279 423 0 0 0 chr11 90980083 90980130 -30863726 + (TAA)n Simple_repeat Simple_repeat 2 48 0 7 1279 847 302 137 51 chr11 90980178 90980610 -30863246 - MLT2B1 LTR ERVL -34 486 18 7 1279 1752 53 4 0 chr11 90981000 90981226 -30862630 - L1Md_F2 LINE L1 -359 6223 5997 7 1279 1485 72 5 9 chr11 90981226 90981437 -30862419 + L1Md_F2 LINE L1 6361 6570 -12 7 1279 2274 197 12 9 chr11 90981713 90982133 -30861723 - MTC LTR MaLR 0 421 1 7 1279 368 288 163 4 chr11 90982282 90982509 -30861347 + Tigger13a DNA MER2_type 290 552 -219 7 1279 270 0 0 0 chr11 90982693 90982723 -30861133 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1279 265 360 19 74 chr11 90982779 90982995 -30860861 + MLT1H LTR MaLR 72 275 -274 7 1279 441 0 0 0 chr11 90983584 90983633 -30860223 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1279 218 364 0 0 chr11 90984881 90984969 -30858887 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 7 1279 303 290 150 92 chr11 90985453 90985823 -30858033 + MTEa LTR MaLR 1 379 0 7 1279 251 347 0 14 chr11 90986611 90986684 -30857172 + BC1_Mm scRNA scRNA 7 78 -74 7 1279 249 108 0 0 chr11 90986733 90986770 -30857086 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1279 245 305 0 99 chr11 90987114 90987205 -30856651 + RSINE1 SINE B4 84 165 0 7 1279 710 304 62 108 chr11 90987355 90987661 -30856195 - B4A SINE B4 0 292 1 7 1279 804 88 18 9 chr11 90987685 90987799 -30856057 + PB1D9 SINE Alu 5 119 -1 7 1279 426 127 0 0 chr11 90987920 90987991 -30855865 + (CA)n Simple_repeat Simple_repeat 1 71 0 7 1279 189 0 0 0 chr11 90989281 90989302 -30854554 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1279 189 0 0 0 chr11 90989774 90989795 -30854061 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1279 264 111 0 0 chr11 90989808 90989853 -30854003 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 7 1279 1853 208 40 38 chr11 90989981 90990401 -30853455 + MTC LTR MaLR 1 421 0 7 1279 180 0 0 0 chr11 90990852 90990872 -30852984 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1279 238 278 93 72 chr11 90991272 90991466 -30852390 + L1MEg LINE L1 504 701 -5383 7 1279 209 184 41 0 chr11 90991661 90991710 -30852146 + (GGATG)n Simple_repeat Simple_repeat 3 53 0 7 1279 204 125 0 0 chr11 90991939 90991971 -30851885 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1279 396 0 0 0 chr11 90992144 90992188 -30851668 + (TAA)n Simple_repeat Simple_repeat 2 45 0 7 1279 358 308 124 0 chr11 90993310 90993495 -30850361 - Lx8 LINE L1 -332 7141 6934 7 1279 309 51 0 0 chr11 90994832 90994871 -30848985 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1279 297 272 115 124 chr11 90994905 90995038 -30848818 - B4A SINE B4 -75 217 85 7 1279 642 255 0 0 chr11 90995038 90995179 -30848677 - B1_Mur1 SINE Alu -8 141 1 7 1279 297 272 115 124 chr11 90995179 90995263 -30848593 - B4A SINE B4 -208 84 2 7 1279 423 0 0 0 chr11 90995959 90996006 -30847850 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1279 647 281 20 20 chr11 90996278 90996478 -30847378 - RMER30 DNA MER1_type -1 201 2 7 1279 1051 266 127 22 chr11 90996554 90996877 -30846979 - ORR1E LTR MaLR -2 357 1 7 1279 2112 112 16 0 chr11 90996953 90997267 -30846589 + ORR1A2 LTR MaLR 1 319 -8 7 1279 238 0 53 26 chr11 90997275 90997313 -30846543 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1279 275 297 36 86 chr11 90997318 90997458 -30846398 + MER5A DNA MER1_type 30 162 -27 7 1279 1102 124 5 5 chr11 90997491 90997693 -30846163 - L1_Mur1 LINE L1 -4419 1467 1266 7 1279 1836 167 113 3 chr11 90997707 90998062 -30845794 - ORR1B1 LTR MaLR 0 394 1 7 1279 24 0 0 0 chr11 90998062 90998086 -30845770 + AT_rich Low_complexity Low_complexity 1 24 0 7 1279 24 53 0 0 chr11 90998260 90998298 -30845558 + AT_rich Low_complexity Low_complexity 1 38 0 7 1279 265 371 26 0 chr11 90998338 90998454 -30845402 + RSINE1 SINE B4 44 162 -3 7 1279 519 17 0 0 chr11 90998464 90998524 -30845332 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1279 327 96 0 0 chr11 90998524 90998576 -30845280 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1279 490 244 64 71 chr11 90998749 90998890 -30844966 + B3A SINE B2 5 144 -54 7 1279 423 0 0 0 chr11 90998913 90998960 -30844896 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1279 1217 34 7 0 chr11 90999058 90999204 -30844652 + B1_Mus1 SINE Alu 2 148 0 7 1279 693 267 106 26 chr11 90999271 90999498 -30844358 + MTE-int LTR MaLR 61 305 -1275 7 1279 1046 324 125 33 chr11 90999471 90999991 -30843865 + MTE-int LTR MaLR 825 1392 -188 7 1279 487 330 23 6 chr11 91000000 91000177 -30843679 + MTE-int LTR MaLR 1399 1578 -2 1 1279 1187 91 6 0 chr11 91000213 91000388 -30843468 + (GAA)n Simple_repeat Simple_repeat 2 177 0 2 1279 6277 126 8 35 chr11 91000393 91000604 -30843252 + L1_Mm LINE L1 3064 3269 -2614 3 1279 1428 70 16 0 chr11 91000604 91000791 -30843065 + B2_Mm2 SINE B2 1 190 -5 4 1279 6277 126 8 35 chr11 91000791 91001679 -30842177 + L1_Mm LINE L1 3270 4133 -1750 3 1279 297 0 0 0 chr11 91001679 91001712 -30842144 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1279 3449 189 36 22 chr11 91001737 91002841 -30841015 + Lx7 LINE L1 5323 6443 -1253 6 1279 225 339 129 30 chr11 91004101 91004302 -30839554 - MamGypLTR1d LTR Gypsy -583 230 10 7 1279 231 281 33 22 chr11 91004355 91004446 -30839410 + B3 SINE B2 95 186 -30 8 1279 521 30 15 0 chr11 91004503 91004570 -30839286 + (CAA)n Simple_repeat Simple_repeat 2 69 0 9 1279 287 327 29 29 chr11 91004847 91004951 -30838905 + MER5A1 DNA MER1_type 1 104 -62 1 1279 1354 151 50 8 chr11 91005151 91005392 -30838464 - RLTR9D LTR ERVK -1 402 152 1 1279 2693 33 0 15 chr11 91005398 91005734 -30838122 - L1Md_F3 LINE L1 -18 6566 6236 1 1279 1349 13 0 0 chr11 91005734 91005884 -30837972 + L1Md_T LINE L1 6088 6237 -345 1 1279 348 57 8 20 chr11 91005886 91005951 -30837905 - RLTR9D LTR ERVK -358 62 1 1 1279 192 97 0 0 chr11 91006332 91006363 -30837493 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1279 554 234 0 27 chr11 91006927 91007037 -30836819 + B1_Mur2 SINE Alu 9 115 -34 1 1279 198 71 0 0 chr11 91007037 91007065 -30836791 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 1 1279 1139 112 6 0 chr11 91008720 91008899 -30834957 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1279 383 0 0 21 chr11 91009370 91009418 -30834438 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1279 2492 181 104 50 chr11 91009989 91010797 -30833059 - RMER6C LTR ERVK 0 720 1 1 1279 200 61 0 57 chr11 91010961 91010996 -30832860 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 1279 18010 150 19 7 chr11 91011847 91016117 -30827739 + Lx LINE L1 373 6646 -8 2 1279 14593 25 0 0 chr11 91016179 91018568 -30825288 - L1Md_T LINE L1 0 6582 4193 2 1279 268 161 36 0 chr11 91019200 91019256 -30824600 - L1MC LINE L1 -2435 5447 5390 2 1279 210 156 0 0 chr11 91019293 91019338 -30824518 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1279 338 327 48 60 chr11 91019338 91019504 -30824352 - RSINE1 SINE B4 0 165 2 2 1279 654 278 76 18 chr11 91019814 91020089 -30823767 - B4A SINE B4 0 292 2 2 1279 22 56 0 0 chr11 91020612 91020648 -30823208 + AT_rich Low_complexity Low_complexity 1 36 0 2 1279 245 310 20 0 chr11 91020855 91020955 -30822901 - L1M5 LINE L1 -1487 4659 4558 2 1279 851 271 9 58 chr11 91021420 91021643 -30822213 - B3 SINE B2 -4 212 1 2 1279 728 317 46 9 chr11 91021643 91021993 -30821863 - MLT1A0 LTR MaLR -2 363 1 3 1279 2138 117 21 6 chr11 91022069 91022389 -30821467 + Lx3_Mus LINE L1 6660 6986 -23 3 1279 182 62 31 0 chr11 91022389 91022421 -30821435 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 1279 378 236 128 44 chr11 91022481 91022660 -30821196 - B3A SINE B2 -10 185 3 3 1279 278 218 78 10 chr11 91022926 91023028 -30820828 - L1M2 LINE L1 -414 5877 5769 3 1279 216 0 0 0 chr11 91023204 91023228 -30820628 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1279 382 276 25 13 chr11 91023275 91023433 -30820423 - L1M2 LINE L1 -1499 4644 4485 3 1279 674 251 60 10 chr11 91023751 91023952 -30819904 - B3 SINE B2 -5 211 1 3 1279 1291 96 17 0 chr11 91024112 91024289 -30819567 - B2_Mm2 SINE B2 -14 181 2 3 1279 559 197 6 6 chr11 91025401 91025501 -30818355 - B1_Mur4 SINE Alu -22 105 6 3 1279 383 158 22 109 chr11 91025420 91025512 -30818344 - MT2B LTR ERVL -361 240 157 3 1279 256 280 27 0 chr11 91027503 91027578 -30816278 - Lx9 LINE L1 -482 7162 7086 4 1279 787 258 40 20 chr11 91027567 91027769 -30816087 + Lx8 LINE L1 7087 7292 -181 4 1279 859 299 16 50 chr11 91027982 91028399 -30815457 + MTE2a LTR MaLR 11 419 0 4 1279 3118 73 0 2 chr11 91028435 91028832 -30815024 + MTA_Mm LTR MaLR 1 396 0 4 1279 3260 85 15 0 chr11 91028832 91029301 -30814555 + MTA_Mm-int LTR MaLR 1 476 -622 4 1279 565 15 0 0 chr11 91029293 91029359 -30814497 + MTB LTR MaLR 335 400 0 4 1279 228 209 66 132 chr11 91029364 91029433 -30814423 + ORR1D1 LTR MaLR 72 137 -237 4 1279 438 20 0 0 chr11 91029433 91029484 -30814372 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1279 324 0 0 0 chr11 91029484 91029519 -30814337 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1279 596 151 289 14 chr11 91029519 91029668 -30814188 + ORR1D1 LTR MaLR 138 374 0 4 1279 609 76 0 0 chr11 91029678 91029770 -30814086 + (TC)n Simple_repeat Simple_repeat 1 92 0 4 1279 561 171 292 7 chr11 91029831 91029978 -30813878 + ORR1D1 LTR MaLR 186 374 0 4 1279 279 255 4 11 chr11 91030106 91030189 -30813667 + ORR1E LTR MaLR 8 88 -286 5 1279 246 196 0 0 chr11 91030576 91030622 -30813234 + L1M4c LINE L1 980 1025 -5582 5 1279 285 303 0 26 chr11 91030631 91030709 -30813147 + ID SINE ID 3 78 -146 5 1279 510 185 29 15 chr11 91030733 91031014 -30812842 + (CA)n Simple_repeat Simple_repeat 1 285 0 5 1279 307 280 63 37 chr11 91031061 91031250 -30812606 + L1M4c LINE L1 1105 1298 -5347 5 1279 317 281 169 108 chr11 91031567 91031910 -30811946 - MTE2b LTR MaLR -13 366 3 5 1279 577 292 40 18 chr11 91031920 91032192 -30811664 + L1M4c LINE L1 1596 1873 -4876 5 1279 788 206 117 8 chr11 91032274 91032593 -30811263 - L1M2 LINE L1 -805 5486 5116 5 1279 215 338 28 0 chr11 91032604 91032675 -30811181 + (CATG)n Simple_repeat Simple_repeat 2 74 0 5 1279 426 316 81 0 chr11 91032677 91032813 -30811043 - B4A SINE B4 -140 152 6 5 1279 236 330 75 0 chr11 91033013 91033027 -30810829 - ID_B1 SINE B4 -123 101 1 5 1279 258 319 2 0 chr11 91033027 91033040 -30810816 - ID4_ SINE ID -2 81 35 5 1279 269 267 0 0 chr11 91033040 91033100 -30810756 - tRNA-Ala-GCY_ tRNA tRNA -14 61 2 6 1279 261 375 23 38 chr11 91034706 91034839 -30809017 + LTR89 LTR ERVL? 644 774 -105 6 1279 704 121 7 21 chr11 91035219 91035363 -30808493 + (TA)n Simple_repeat Simple_repeat 2 143 0 6 1279 1643 100 0 0 chr11 91035515 91035746 -30808110 - ORR1A2 LTR MaLR -96 231 1 6 1279 24 67 0 0 chr11 91035751 91035796 -30808060 + AT_rich Low_complexity Low_complexity 1 45 0 6 1279 3150 162 122 57 chr11 91036532 91037093 -30806763 - RMER6A LTR ERVK 0 756 188 6 1279 4823 143 26 31 chr11 91037093 91037896 -30805960 + Lx2B LINE L1 6197 6995 -5 6 1279 3150 162 122 57 chr11 91037896 91038042 -30805814 - RMER6A LTR ERVK -569 187 3 6 1279 894 131 273 0 chr11 91038180 91038356 -30805500 - URR1B DNA MER1_type 0 225 2 6 1279 22 35 0 0 chr11 91038621 91038650 -30805206 + AT_rich Low_complexity Low_complexity 1 29 0 6 1279 429 328 81 47 chr11 91038656 91039276 -30804580 + L1ME2 LINE L1 657 1297 -4945 6 1279 217 243 14 0 chr11 91039865 91039939 -30803917 + (TA)n Simple_repeat Simple_repeat 1 75 0 7 1279 1326 85 0 6 chr11 91039990 91040168 -30803688 + B2_Mm2 SINE B2 1 177 -18 7 1279 252 0 0 0 chr11 91040188 91040216 -30803640 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1279 434 177 40 7 chr11 91040499 91040582 -30803274 + RLTR31_Mm LTR ERVK 1 81 -476 7 1279 542 181 9 37 chr11 91040605 91040729 -30803127 - RLTR31_Mm LTR ERVK -442 115 1 7 1279 267 333 20 0 chr11 91041108 91041210 -30802646 + PB1D10 SINE Alu 4 107 -10 7 1279 279 0 0 0 chr11 91041229 91041260 -30802596 + (CAA)n Simple_repeat Simple_repeat 2 32 0 7 1279 233 332 99 26 chr11 91041291 91041706 -30802150 + L1ME2 LINE L1 4178 4622 -1524 6 1279 351 0 0 0 chr11 91041766 91041805 -30802051 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1279 441 0 0 0 chr11 91041805 91041853 -30802003 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1279 616 314 35 8 chr11 91042036 91042290 -30801566 + L1ME2 LINE L1 5631 5891 -273 6 1279 684 297 10 5 chr11 91042492 91042695 -30801161 - B3 SINE B2 -11 205 2 7 1279 233 214 0 0 chr11 91043188 91043244 -30800612 + (CAT)n Simple_repeat Simple_repeat 3 58 0 8 1279 22 35 0 0 chr11 91043642 91043671 -30800185 + AT_rich Low_complexity Low_complexity 1 29 0 8 1279 662 188 0 0 chr11 91043971 91044083 -30799773 + B1_Mur1 SINE Alu 30 141 -8 8 1279 337 286 115 16 chr11 91044122 91044314 -30799542 - Lx9 LINE L1 -42 7602 7392 8 1279 438 292 19 0 chr11 91045928 91046034 -30797822 - PB1D10 SINE Alu -7 110 3 8 1279 304 170 0 0 chr11 91046061 91046108 -30797748 + Lx4A LINE L1 6890 6936 -122 8 1279 414 0 0 0 chr11 91046108 91046154 -30797702 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 8 1279 2063 146 30 3 chr11 91046213 91046550 -30797306 + ORR1A1 LTR MaLR 1 346 0 8 1279 608 48 12 0 chr11 91047747 91047831 -30796025 + (CA)n Simple_repeat Simple_repeat 1 85 0 8 1279 334 300 0 43 chr11 91047896 91048011 -30795845 - B3 SINE B2 -42 174 65 8 1279 281 400 9 0 chr11 91049795 91049910 -30793946 + PB1D10 SINE Alu 2 117 0 9 1279 3032 203 82 82 chr11 91050087 91050153 -30793703 - RLTR21 LTR ERVK -445 1127 1095 9 1279 729 67 0 0 chr11 91050153 91050257 -30793599 + (GA)n Simple_repeat Simple_repeat 1 104 0 9 1279 3032 154 74 91 chr11 91050257 91050992 -30792864 - RLTR21 LTR ERVK -478 1094 371 9 1279 181 165 43 21 chr11 91051491 91051584 -30792272 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 9 1279 1067 242 73 104 chr11 91052195 91052578 -30791278 + MTE2a LTR MaLR 8 378 -1 9 1279 385 144 148 35 chr11 91052860 91052975 -30790881 - Lx9 LINE L1 0 7644 7517 9 1279 519 118 0 0 chr11 91052980 91053065 -30790791 + (TGG)n Simple_repeat Simple_repeat 1 85 0 9 1279 1993 228 53 12 chr11 91053066 91053555 -30790301 - Lx9 LINE L1 -161 7483 6975 9 1279 1052 228 149 41 chr11 91053576 91053891 -30789965 + Lx9 LINE L1 6495 6843 -801 9 1279 321 333 24 8 chr11 91053944 91054068 -30789788 - B4A SINE B4 -155 137 12 9 1279 261 0 0 56 chr11 91054390 91054400 -30789456 + (CCTG)n Simple_repeat Simple_repeat 2 10 0 9 1279 1311 46 0 0 chr11 91054400 91054575 -30789281 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 1 1279 261 0 0 56 chr11 91054575 91054600 -30789256 + (CCTG)n Simple_repeat Simple_repeat 1 25 0 1 1279 796 145 17 0 chr11 91054600 91054772 -30789084 + CT-rich Low_complexity Low_complexity 4 178 0 1 1279 189 0 0 0 chr11 91054918 91054939 -30788917 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1279 25 31 0 0 chr11 91055185 91055217 -30788639 + AT_rich Low_complexity Low_complexity 1 32 0 1 1279 423 0 0 0 chr11 91055885 91055932 -30787924 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1279 260 262 0 0 chr11 91056185 91056246 -30787610 + MER92C LTR ERV1 488 548 -6 1 1279 234 369 88 29 chr11 91056933 91057070 -30786786 + L2b LINE L2 3188 3332 -55 1 1279 195 288 61 0 chr11 91057798 91057864 -30785992 - L2c LINE L2 -92 3295 3226 1 1279 279 157 0 0 chr11 91058677 91058728 -30785128 + (CAT)n Simple_repeat Simple_repeat 1 51 0 1 1279 23 33 0 0 chr11 91059767 91059797 -30784059 + AT_rich Low_complexity Low_complexity 1 30 0 1 1279 342 0 0 0 chr11 91060083 91060121 -30783735 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1279 861 17 0 16 chr11 91060748 91060870 -30782986 + L1Md_F3 LINE L1 6441 6560 -24 1 1279 306 0 0 0 chr11 91060870 91060904 -30782952 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1279 298 254 0 43 chr11 91061244 91061314 -30782542 + ID_B1 SINE B4 72 138 -86 1 1279 441 0 0 0 chr11 91062358 91062407 -30781449 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1279 542 264 50 0 chr11 91062428 91062549 -30781307 - B1_Mus2 SINE Alu -9 138 12 1 1279 1023 123 0 0 chr11 91062559 91062862 -30780994 + (TCTA)n Simple_repeat Simple_repeat 1 303 0 1 1279 21 0 0 0 chr11 91063147 91063168 -30780688 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 243 234 123 15 chr11 91063265 91063330 -30780526 + B4 SINE B4 201 272 -20 1 1279 23 33 0 0 chr11 91063431 91063461 -30780395 + AT_rich Low_complexity Low_complexity 1 30 0 1 1279 260 172 11 33 chr11 91064071 91064161 -30779695 + (CATA)n Simple_repeat Simple_repeat 1 88 0 1 1279 531 0 0 0 chr11 91065157 91065216 -30778640 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1 1279 260 344 11 0 chr11 91065477 91065570 -30778286 + MER110 LTR ERV1 1 94 -397 1 1279 286 308 88 24 chr11 91066028 91066195 -30777661 + RMER20B LTR ERVK 202 399 -228 1 1279 340 312 82 14 chr11 91066839 91066870 -30776986 + MER110 LTR ERV1 96 129 -362 1 1279 270 0 0 0 chr11 91066870 91066900 -30776956 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1279 340 312 82 14 chr11 91066900 91067014 -30776842 + MER110 LTR ERV1 130 251 -240 1 1279 918 96 0 0 chr11 91067104 91067261 -30776595 + (TC)n Simple_repeat Simple_repeat 1 157 0 1 1279 360 0 0 0 chr11 91067261 91067300 -30776556 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1279 231 275 14 14 chr11 91068526 91068596 -30775260 + CT-rich Low_complexity Low_complexity 3 72 0 1 1279 414 341 72 4 chr11 91068648 91068910 -30774946 + B4A SINE B4 1 280 -12 1 1279 327 25 0 0 chr11 91068982 91069022 -30774834 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1279 21 0 0 0 chr11 91069893 91069914 -30773942 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 219 25 0 70 chr11 91069987 91070030 -30773826 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1 1279 1110 76 0 7 chr11 91070061 91070206 -30773650 - B1_Mus2 SINE Alu -3 144 1 1 1279 609 14 0 0 chr11 91070308 91070378 -30773478 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 1 1279 333 276 121 39 chr11 91070417 91070753 -30773103 - MLT2C2 LTR ERVL 0 563 1 1 1279 193 274 0 31 chr11 91070817 91070881 -30772975 - MIR SINE MIR -44 218 157 1 1279 513 0 0 0 chr11 91070979 91071036 -30772820 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1279 410 114 0 14 chr11 91071098 91071169 -30772687 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1279 2104 186 45 0 chr11 91071169 91071568 -30772288 + MTC LTR MaLR 5 421 0 1 1279 198 0 0 0 chr11 91072003 91072025 -30771831 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1279 412 390 26 13 chr11 91072123 91072349 -30771507 + MLT1F2 LTR MaLR 5 233 -327 1 1279 249 272 92 23 chr11 91072419 91072539 -30771317 + MLT1F2 LTR MaLR 436 609 -44 1 1279 994 168 126 5 chr11 91072556 91072754 -30771102 - URR1A DNA MER1_type 0 226 5 1 1279 249 279 147 67 chr11 91073131 91073281 -30770575 - MLT1B LTR MaLR -126 264 103 1 1279 2464 49 0 10 chr11 91073915 91074225 -30769631 - L1Md_F2 LINE L1 -2 6580 6274 1 1279 506 307 46 55 chr11 91076011 91076228 -30767628 - B3A SINE B2 -1 215 1 1 1279 192 152 0 0 chr11 91076324 91076357 -30767499 + A-rich Low_complexity Low_complexity 1 33 0 1 1279 262 308 93 0 chr11 91076643 91076749 -30767107 + MLT1G LTR MaLR 7 130 -461 1 1279 336 64 0 0 chr11 91077159 91077206 -30766650 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1279 2489 103 5 11 chr11 91078608 91078981 -30764875 - Lx4A LINE L1 -107 6951 6581 1 1279 356 128 26 0 chr11 91078981 91079059 -30764797 + Lx4A LINE L1 6979 7058 0 1 1279 457 186 12 0 chr11 91079299 91079385 -30764471 - MTEa LTR MaLR -8 371 285 1 1279 245 263 125 17 chr11 91079460 91079580 -30764276 - MTEa LTR MaLR -195 164 32 1 1279 236 297 0 0 chr11 91079605 91079669 -30764187 - MTEa LTR MaLR -295 64 1 1 1279 332 330 0 35 chr11 91079912 91080025 -30763831 + PB1D7 SINE Alu 12 120 0 1 1279 479 325 25 25 chr11 91081609 91081805 -30762051 + B3 SINE B2 4 199 -17 1 1279 1366 77 5 11 chr11 91081845 91082030 -30761826 + B2_Mm1a SINE B2 2 185 -8 1 1279 227 54 27 0 chr11 91082159 91082196 -30761660 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1279 1026 286 23 3 chr11 91085137 91085439 -30758417 - RMER5 LTR ERV1 0 534 227 1 1279 325 220 47 35 chr11 91085456 91085541 -30758315 - RMER5 LTR ERV1 -404 130 45 1 1279 275 229 83 12 chr11 91086098 91086182 -30757674 + MTEa LTR MaLR 290 379 0 1 1279 714 335 45 42 chr11 91086265 91086598 -30757258 - MLT1F2 LTR MaLR -210 350 17 1 1279 1152 288 16 55 chr11 91087047 91087432 -30756424 - Lx5 LINE L1 -75 6975 6606 1 1279 1816 301 28 21 chr11 91087677 91088383 -30755473 - Lx9 LINE L1 -206 7438 6728 1 1279 470 274 112 103 chr11 91088438 91088670 -30755186 + MER67D LTR ERV1 71 304 -210 1 1279 345 109 0 0 chr11 91090251 91090315 -30753541 + Lx2 LINE L1 6933 6996 -1 1 1279 21 0 0 0 chr11 91090315 91090336 -30753520 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 22 0 0 0 chr11 91090781 91090803 -30753053 + AT_rich Low_complexity Low_complexity 1 22 0 1 1279 6224 50 5 1 chr11 91090892 91091671 -30752185 + L1Md_F2 LINE L1 5801 6582 0 1 1279 213 39 0 0 chr11 91091693 91091719 -30752137 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1279 441 0 0 0 chr11 91093693 91093742 -30750114 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1279 368 55 18 0 chr11 91093742 91093796 -30750060 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 1 1280 432 0 0 0 chr11 91095271 91095319 -30748537 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1280 532 341 93 25 chr11 91095339 91095669 -30748187 + MLT1E1 LTR MaLR 330 679 -1 1 1280 183 247 132 24 chr11 91096629 91096712 -30747144 + MIR SINE MIR 110 201 -61 1 1280 1319 270 54 23 chr11 91096788 91097636 -30746220 - RMER1A Other Other -556 510 2 1 1280 23 0 0 0 chr11 91098595 91098618 -30745238 + AT_rich Low_complexity Low_complexity 1 23 0 1 1280 1122 256 21 11 chr11 91100322 91100602 -30743254 - RMER15 LTR ERVL -65 510 228 1 1280 248 211 18 0 chr11 91100703 91100760 -30743096 - RMER15 LTR ERVL -517 58 1 1 1280 260 174 58 0 chr11 91100767 91100853 -30743003 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1280 908 236 130 32 chr11 91101127 91101472 -30742384 + MTE2b LTR MaLR 1 379 0 1 1280 351 0 0 0 chr11 91101961 91102000 -30741856 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1280 6490 110 31 19 chr11 91102809 91103820 -30740036 - RLTR13D2 LTR ERVK 0 1023 1 1 1280 237 211 0 0 chr11 91103826 91103883 -30739973 + GA-rich Low_complexity Low_complexity 3 59 0 1 1280 415 232 77 39 chr11 91104728 91104858 -30738998 - B4A SINE B4 0 292 158 1 1280 623 306 0 30 chr11 91105026 91105191 -30738665 - B3A SINE B2 -36 162 3 1 1280 195 42 0 0 chr11 91106047 91106071 -30737785 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1 1280 385 323 16 82 chr11 91106099 91106281 -30737575 - B4A SINE B4 -120 172 3 1 1280 775 322 17 47 chr11 91106511 91106811 -30737045 + B4A SINE B4 2 292 0 1 1280 1242 316 38 10 chr11 91107731 91108226 -30735630 + Lx8 LINE L1 6600 7108 -365 1 1280 208 368 9 17 chr11 91108450 91108566 -30735290 + (CATG)n Simple_repeat Simple_repeat 1 115 0 1 1280 274 331 64 29 chr11 91109233 91109373 -30734483 + MIRc SINE MIR 120 264 -4 1 1280 369 0 0 0 chr11 91110246 91110287 -30733569 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1280 1802 160 6 83 chr11 91110839 91111187 -30732669 + ORR1A4 LTR MaLR 1 321 -8 1 1280 687 280 20 48 chr11 91111604 91111855 -30732001 - Tigger5 DNA MER2_type 0 2406 2163 1 1280 234 91 0 0 chr11 91112943 91112976 -30730880 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1280 240 35 0 0 chr11 91113501 91113530 -30730326 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1280 603 67 0 0 chr11 91115385 91115474 -30728382 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 1 1280 324 0 0 0 chr11 91115475 91115511 -30728345 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1280 502 310 70 57 chr11 91115534 91115763 -30728093 - B4A SINE B4 -56 236 5 1 1280 213 94 0 0 chr11 91118465 91118497 -30725359 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1280 385 361 59 44 chr11 91118524 91118796 -30725060 - B4A SINE B4 -16 276 1 1 1280 283 270 0 13 chr11 91119055 91119130 -30724726 + GA-rich Low_complexity Low_complexity 2 75 0 1 1280 5942 162 7 7 chr11 91119132 91119801 -30724055 + Lx5 LINE L1 4772 5442 -435 1 1280 261 0 0 0 chr11 91119801 91119830 -30724026 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1280 5942 174 29 5 chr11 91119830 91121154 -30722702 + Lx5 LINE L1 5443 6811 -239 1 1280 22 35 0 0 chr11 91121312 91121341 -30722515 + AT_rich Low_complexity Low_complexity 1 29 0 1 1280 23 54 0 0 chr11 91121427 91121464 -30722392 + AT_rich Low_complexity Low_complexity 1 37 0 2 1280 701 241 85 5 chr11 91121522 91121722 -30722134 + B3 SINE B2 1 216 0 2 1280 243 374 78 14 chr11 91121758 91121899 -30721957 + MIRb SINE MIR 36 185 -83 2 1280 330 345 93 104 chr11 91122206 91122668 -30721188 + LTR33A_ LTR ERVL 3 459 -56 2 1280 253 325 34 34 chr11 91122690 91122808 -30721048 - MLT1D LTR MaLR 0 505 388 2 1280 230 301 57 95 chr11 91122898 91123056 -30720800 - MLT1D LTR MaLR -250 217 66 2 1280 197 0 71 0 chr11 91124302 91124330 -30719526 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1280 309 109 0 0 chr11 91125381 91125427 -30718429 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1280 700 296 36 36 chr11 91125428 91125649 -30718207 - ID_B1 SINE B4 -2 222 2 2 1280 198 71 0 0 chr11 91126118 91126146 -30717710 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1280 243 0 0 0 chr11 91126386 91126413 -30717443 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1280 2698 171 75 7 chr11 91126434 91127156 -30716700 - L1_Mur3 LINE L1 -3984 1896 1117 2 1280 4926 30 0 0 chr11 91127150 91127751 -30716105 - L1Md_T LINE L1 -167 6415 5815 2 1280 1142 49 0 119 chr11 91127751 91127936 -30715920 + L1Md_A LINE L1 6418 6580 -2 2 1280 2335 234 43 33 chr11 91127938 91128804 -30715052 - L1_Mur3 LINE L1 -6615 1113 18 2 1280 188 0 0 69 chr11 91129691 91129720 -30714136 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1280 806 346 13 8 chr11 91130655 91131048 -30712808 + Lx9 LINE L1 7065 7459 -185 2 1280 276 77 0 0 chr11 91131048 91131087 -30712769 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1280 1065 70 7 7 chr11 91131250 91131394 -30712462 + B1_Mm SINE Alu 1 144 -3 2 1280 22 35 0 0 chr11 91132189 91132218 -30711638 + AT_rich Low_complexity Low_complexity 1 29 0 2 1280 563 333 31 65 chr11 91132278 91132312 -30711544 - B4A SINE B4 -4 288 256 2 1280 360 0 0 0 chr11 91132312 91132352 -30711504 + (GGA)n Simple_repeat Simple_repeat 2 41 0 2 1280 563 333 31 65 chr11 91132352 91132609 -30711247 - B4A SINE B4 -37 255 7 2 1280 652 270 34 7 chr11 91132840 91132989 -30710867 + B3A SINE B2 3 155 -43 2 1280 228 67 0 0 chr11 91132990 91133020 -30710836 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1280 25 0 0 0 chr11 91133032 91133057 -30710799 + AT_rich Low_complexity Low_complexity 1 25 0 2 1280 798 232 53 24 chr11 91133057 91133265 -30710591 + B3 SINE B2 1 214 -2 2 1280 348 258 106 3 chr11 91133450 91133644 -30710212 + L1MD LINE L1 4552 4766 -1380 2 1280 499 229 18 9 chr11 91133729 91133839 -30710017 - B3 SINE B2 -9 207 97 2 1280 250 175 0 0 chr11 91133974 91134014 -30709842 + B3 SINE B2 1 40 -176 2 1280 2837 239 128 31 chr11 91134016 91135104 -30708752 + RMER1B Other Other 163 1055 -11 2 1280 547 297 102 13 chr11 91135149 91135306 -30708550 + B3 SINE B2 32 202 -14 2 1280 690 75 0 0 chr11 91135306 91135399 -30708457 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 2 1280 662 292 130 40 chr11 91135605 91135905 -30707951 + MLT2D LTR ERVL 39 365 -49 2 1280 240 333 66 44 chr11 91136748 91136930 -30706926 + MARNA DNA Mariner 25 210 -376 2 1280 675 57 0 0 chr11 91137310 91137398 -30706458 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 2 1280 972 304 105 86 chr11 91137926 91138556 -30705300 - RLTR26 LTR ERVK 0 642 1 2 1280 3851 47 19 0 chr11 91138632 91139098 -30704758 + MT2C_Mm LTR ERVL 1 475 0 2 1280 198 286 71 0 chr11 91140507 91140577 -30703279 + MIR3 SINE MIR 96 170 -38 2 1280 239 276 75 75 chr11 91141221 91141327 -30702529 + MER20 DNA MER1_type 113 218 -1 2 1280 749 179 8 0 chr11 91141503 91141626 -30702230 + B1_Mur1 SINE Alu 5 128 -21 2 1280 294 361 66 22 chr11 91141504 91141640 -30702216 + B4A SINE B4 91 232 -60 2 1280 327 259 105 12 chr11 91141746 91141832 -30702024 - RLTR20B2 LTR ERVK 0 560 467 2 1280 381 22 0 0 chr11 91141832 91141878 -30701978 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1280 2001 178 55 8 chr11 91141878 91142279 -30701577 - RLTR20B2 LTR ERVK -135 425 6 2 1280 474 317 24 102 chr11 91142310 91142556 -30701300 + B4 SINE B4 6 232 -60 2 1280 246 276 23 68 chr11 91142617 91142749 -30701107 + L1MB7 LINE L1 5902 6027 -157 2 1280 297 219 12 16 chr11 91143603 91143683 -30700173 - MLT1A0 LTR MaLR -48 317 248 2 1280 2937 101 22 20 chr11 91143781 91144227 -30699629 - Lx LINE L1 -13 6641 6195 2 1280 585 214 0 67 chr11 91145124 91145259 -30698597 + B3 SINE B2 73 198 -18 2 1280 273 339 8 73 chr11 91145391 91145515 -30698341 - PB1D10 SINE Alu 0 117 2 2 1280 24 0 0 0 chr11 91145723 91145747 -30698109 + AT_rich Low_complexity Low_complexity 1 24 0 2 1280 253 281 155 14 chr11 91145747 91146043 -30697813 - L1ME4a LINE L1 -2 6122 5785 2 1280 21 0 0 0 chr11 91146239 91146260 -30697596 + AT_rich Low_complexity Low_complexity 1 21 0 2 1280 719 251 79 17 chr11 91147068 91147246 -30696610 - B3 SINE B2 -27 189 1 2 1280 360 0 0 0 chr11 91147598 91147638 -30696218 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 1280 250 350 192 36 chr11 91147682 91147875 -30695981 - MER58A DNA MER1_type 0 224 2 2 1280 228 67 0 0 chr11 91149762 91149792 -30694064 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 2 1280 1709 122 0 1 chr11 91149800 91150059 -30693797 + Lx4A LINE L1 6699 6947 -111 2 1280 401 155 46 35 chr11 91150055 91150142 -30693714 - Lx4B LINE L1 -218 6840 6753 2 1280 282 56 0 0 chr11 91150170 91150206 -30693650 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1280 207 0 0 0 chr11 91150207 91150230 -30693626 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1280 342 45 0 0 chr11 91150461 91150505 -30693351 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1280 202 262 0 62 chr11 91151634 91151699 -30692157 + C-rich Low_complexity Low_complexity 1 61 0 2 1280 234 129 16 31 chr11 91151703 91151767 -30692089 + CT-rich Low_complexity Low_complexity 2 64 0 2 1280 215 31 31 0 chr11 91151958 91151990 -30691866 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1280 940 242 8 64 chr11 91152011 91152245 -30691611 - B4 SINE B4 -69 223 3 2 1280 246 105 0 0 chr11 91152254 91152292 -30691564 + (CCCCCT)n Simple_repeat Simple_repeat 6 43 0 2 1280 434 179 0 120 chr11 91152294 91152402 -30691454 - PB1D9 SINE Alu -13 107 13 2 1280 186 43 0 0 chr11 91152402 91152425 -30691431 + (CAGCC)n Simple_repeat Simple_repeat 4 26 0 2 1280 621 224 23 55 chr11 91153086 91153251 -30690605 - B3 SINE B2 -29 164 1 2 1280 381 102 0 0 chr11 91153576 91153635 -30690221 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1280 315 251 170 5 chr11 91154457 91154669 -30689187 - Lx9 LINE L1 -15 7629 7383 2 1280 1425 66 5 10 chr11 91154672 91154871 -30688985 - L1Md_F2 LINE L1 -181 6401 6204 2 1280 266 136 0 0 chr11 91155198 91155242 -30688614 - RMER6A LTR ERVK -511 245 202 2 1280 9023 50 8 10 chr11 91155267 91157154 -30686702 - L1Md_F2 LINE L1 -1 6581 4699 2 1280 1229 71 0 0 chr11 91157152 91157320 -30686536 + L1Md_F2 LINE L1 4527 4694 -1189 2 1280 22 0 0 0 chr11 91158661 91158683 -30685173 + AT_rich Low_complexity Low_complexity 1 22 0 2 1280 587 14 14 0 chr11 91159229 91159301 -30684555 + (TTC)n Simple_repeat Simple_repeat 2 74 0 2 1280 2910 88 22 0 chr11 91159428 91159838 -30684018 + BGLII LTR ERVK 3 421 0 2 1280 934 250 59 85 chr11 91160507 91160848 -30683008 - ORR1E LTR MaLR -2 357 26 2 1280 285 98 0 0 chr11 91160859 91160900 -30682956 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1280 1361 85 16 16 chr11 91160900 91161092 -30682764 - B2_Mm2 SINE B2 -2 193 2 2 1280 276 306 23 12 chr11 91161150 91161236 -30682620 - MTE-int LTR MaLR -1275 305 219 2 1280 1061 111 0 17 chr11 91161249 91161263 -30682593 + (TTCTCC)n Simple_repeat Simple_repeat 5 18 0 2 1280 1290 55 0 16 chr11 91161263 91161446 -30682410 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1280 1061 111 0 17 chr11 91161446 91161606 -30682250 + (TTCTCC)n Simple_repeat Simple_repeat 4 160 0 2 1280 410 0 20 0 chr11 91161634 91161684 -30682172 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 2 1280 2928 307 68 32 chr11 91161724 91162732 -30681124 + MTE-int LTR MaLR 298 1341 -239 2 1280 1841 197 35 9 chr11 91162923 91163266 -30680590 - MTC LTR MaLR 0 421 70 2 1280 185 167 0 18 chr11 91163285 91163340 -30680516 + T-rich Low_complexity Low_complexity 1 54 0 2 1280 490 206 39 19 chr11 91163341 91163445 -30680411 - B1_Mur4 SINE Alu 0 150 45 2 1280 485 167 0 0 chr11 91163457 91163535 -30680321 - MTC LTR MaLR -343 78 1 2 1280 3974 78 2 2 chr11 91163544 91164067 -30679789 - L1_Mus1 LINE L1 0 6567 6045 2 1280 7172 62 1 9 chr11 91164089 91165081 -30678775 - L1_Mur1 LINE L1 -310 5576 4593 2 1280 1491 61 5 0 chr11 91165081 91165278 -30678578 + L1_Mur1 LINE L1 5565 5762 -124 2 1280 4854 67 20 9 chr11 91165278 91165929 -30677927 + Lx3_Mus LINE L1 6351 7008 -1 2 1280 184 233 38 88 chr11 91165977 91166057 -30677799 - L2b LINE L2 -219 3156 3081 2 1280 382 311 100 66 chr11 91166334 91166654 -30677202 - L1ME1 LINE L1 -2 6177 5847 2 1280 814 267 81 15 chr11 91166655 91166853 -30677003 + B3 SINE B2 6 216 0 2 1280 366 328 81 38 chr11 91167023 91167232 -30676624 + RMER12 LTR ERVK 771 988 -334 2 1280 328 262 0 15 chr11 91167236 91167368 -30676488 + (TATG)n Simple_repeat Simple_repeat 1 130 0 2 1280 1104 301 56 26 chr11 91167436 91167635 -30676221 - MTE2b LTR MaLR 0 370 170 2 1280 309 51 0 0 chr11 91167635 91167674 -30676182 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1280 1104 300 56 26 chr11 91167674 91167834 -30676022 - MTE2b LTR MaLR -210 169 11 2 1280 366 323 120 18 chr11 91167844 91168199 -30675657 - L1ME1 LINE L1 -605 5637 5254 2 1280 1237 178 45 8 chr11 91168213 91168457 -30675399 - RMER1A Other Other 0 1030 778 2 1280 2100 36 0 70 chr11 91169066 91169366 -30674490 + L1Md_F2 LINE L1 6303 6581 -1 2 1280 491 297 105 26 chr11 91170435 91170587 -30673269 + B3A SINE B2 3 166 -32 2 1280 228 329 0 0 chr11 91170581 91170651 -30673205 + B3A SINE B2 88 157 -41 3 1280 203 163 70 0 chr11 91171815 91171858 -30671998 - MIRc SINE MIR -14 254 209 3 1280 186 43 0 0 chr11 91171986 91172009 -30671847 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1280 401 271 91 23 chr11 91172976 91173108 -30670748 + B1F SINE Alu 1 141 -8 3 1280 431 0 37 0 chr11 91173330 91173384 -30670472 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 3 1280 246 62 0 0 chr11 91173499 91173531 -30670325 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1280 297 0 0 0 chr11 91173531 91173563 -30670293 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1280 227 270 32 0 chr11 91175321 91175384 -30668472 + L1MC4 LINE L1 6765 6829 -1213 3 1280 377 348 25 70 chr11 91175487 91175688 -30668168 + ID_B1 SINE B4 2 193 -31 3 1280 195 42 0 0 chr11 91175918 91175942 -30667914 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1280 712 299 6 39 chr11 91175949 91176130 -30667726 - B3A SINE B2 -23 175 1 3 1280 205 297 13 26 chr11 91176785 91176861 -30666995 + GA-rich Low_complexity Low_complexity 4 78 0 3 1280 605 327 96 4 chr11 91177692 91177941 -30665915 + B4A SINE B4 1 272 -20 3 1280 218 80 64 39 chr11 91179699 91179777 -30664079 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 3 1280 415 333 110 45 chr11 91179978 91180314 -30663542 - L2 LINE L2 -855 2564 2207 3 1280 332 300 33 0 chr11 91182295 91182415 -30661441 + (CA)n Simple_repeat Simple_repeat 1 124 0 3 1280 228 226 19 114 chr11 91182932 91183037 -30660819 - L1MC4a LINE L1 -1611 6271 6177 3 1280 353 360 109 61 chr11 91183319 91183612 -30660244 - LTR16A1 LTR ERVL -95 361 55 3 1280 1008 307 13 43 chr11 91183707 91183802 -30660054 + B4 SINE B4 1 96 -196 3 1280 593 251 67 64 chr11 91183802 91184160 -30659696 - RLTR10D LTR ERVK 0 359 1 3 1280 1008 307 13 43 chr11 91184160 91184364 -30659492 + B4 SINE B4 97 291 -1 3 1280 438 88 0 0 chr11 91184409 91184477 -30659379 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1280 229 276 0 0 chr11 91184478 91184536 -30659320 + GA-rich Low_complexity Low_complexity 2 59 0 3 1280 754 231 41 121 chr11 91184536 91184873 -30658983 + ORR1D1 LTR MaLR 2 282 -85 3 1280 658 54 35 9 chr11 91184874 91184987 -30658869 + (GA)n Simple_repeat Simple_repeat 1 116 0 3 1280 187 283 0 19 chr11 91186114 91186168 -30657688 - L2a LINE L2 0 3426 3374 3 1280 301 274 89 101 chr11 91186295 91186543 -30657313 + LTR37B LTR ERV1 187 431 -37 3 1280 4092 177 90 25 chr11 91188762 91189598 -30654258 - RMER19B LTR ERVK -12 890 1 3 1280 243 313 124 20 chr11 91189618 91189820 -30654036 + L1ME1 LINE L1 51 273 -6127 3 1280 873 37 0 0 chr11 91189887 91189996 -30653860 + (GA)n Simple_repeat Simple_repeat 1 109 0 3 1280 367 337 13 35 chr11 91190106 91190420 -30653436 + L1ME1 LINE L1 552 858 -5542 3 1280 771 278 14 0 chr11 91190603 91190815 -30653041 + B3 SINE B2 2 216 0 3 1280 334 340 10 6 chr11 91191058 91191317 -30652539 + L1ME1 LINE L1 3016 3270 -3049 3 1280 2212 178 55 19 chr11 91191391 91191866 -30651990 - RLTR11A2 LTR ERVK -2 525 34 3 1280 1899 201 37 10 chr11 91192010 91192411 -30651445 + RLTR26 LTR ERVK 1 412 -230 3 1280 523 198 9 35 chr11 91192464 91192579 -30651277 + RLTR26 LTR ERVK 531 642 0 3 1280 238 239 0 8 chr11 91192589 91192670 -30651186 + L1ME1 LINE L1 3543 3621 -2698 3 1280 312 290 101 29 chr11 91192928 91193166 -30650690 + L1M3 LINE L1 3893 4147 -1993 3 1280 391 300 18 9 chr11 91193453 91193564 -30650292 + B1F SINE Alu 2 113 -36 3 1280 296 331 50 65 chr11 91193456 91193595 -30650261 + ID_B1 SINE B4 86 222 -2 3 1280 1329 303 40 31 chr11 91193829 91194690 -30649166 + L1ME1 LINE L1 5474 6341 -11 3 1280 1023 267 132 51 chr11 91195066 91195111 -30648745 - MT2A LTR ERVL 0 533 489 3 1280 459 52 0 0 chr11 91195111 91195169 -30648687 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1280 231 125 0 0 chr11 91195169 91195209 -30648647 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1280 1023 267 132 51 chr11 91195209 91195655 -30648201 - MT2A LTR ERVL -45 488 2 3 1280 611 190 60 48 chr11 91196720 91196748 -30647108 + ID_B1 SINE B4 56 161 -131 3 1280 1025 58 0 14 chr11 91196748 91196888 -30646968 + B1_Mus2 SINE Alu 10 147 0 3 1280 611 190 60 48 chr11 91196888 91196908 -30646948 + ID_B1 SINE B4 162 246 -46 3 1280 1376 147 36 15 chr11 91196930 91197208 -30646648 + Lx2 LINE L1 6763 6997 0 3 1280 394 321 87 51 chr11 91197236 91197512 -30646344 + B4A SINE B4 2 287 -5 3 1280 936 73 0 0 chr11 91197685 91197808 -30646048 - B2_Mm2 SINE B2 -72 123 1 3 1280 380 230 6 18 chr11 91198020 91198184 -30645672 + (TG)n Simple_repeat Simple_repeat 1 162 0 3 1280 24 0 0 0 chr11 91198313 91198337 -30645519 + AT_rich Low_complexity Low_complexity 1 24 0 3 1280 821 246 19 38 chr11 91198338 91198549 -30645307 - Lx5 LINE L1 -5 7045 6839 3 1280 1918 224 6 11 chr11 91198567 91198929 -30644927 + Lx5 LINE L1 6495 6854 -196 3 1280 216 331 36 71 chr11 91199234 91199374 -30644482 - MIR3 SINE MIR -11 197 63 3 1280 282 56 0 0 chr11 91199648 91199684 -30644172 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1280 22 0 0 0 chr11 91200704 91200726 -30643130 + AT_rich Low_complexity Low_complexity 1 22 0 3 1280 254 280 26 13 chr11 91200816 91200892 -30642964 - Tigger5 DNA MER2_type -2257 149 73 3 1280 227 272 62 0 chr11 91200977 91201058 -30642798 - Tigger5 DNA MER2_type -2313 93 8 3 1280 258 32 0 0 chr11 91201330 91201361 -30642495 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1280 352 318 119 17 chr11 91202107 91202283 -30641573 - MLT1D LTR MaLR -10 495 302 3 1280 231 36 0 0 chr11 91202300 91202328 -30641528 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 3 1280 7235 89 36 3 chr11 91202396 91203677 -30640179 - L1_Mus4 LINE L1 0 6636 5308 3 1280 189 0 0 0 chr11 91203971 91203992 -30639864 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1280 354 330 8 17 chr11 91204545 91204662 -30639194 + MIR SINE MIR 125 240 -22 3 1280 246 370 24 78 chr11 91205323 91205528 -30638328 + MLT1L LTR MaLR 211 404 -206 3 1280 1021 336 38 62 chr11 91205749 91206496 -30637360 + Lx9 LINE L1 6721 7471 -2 3 1280 2395 181 75 9 chr11 91206676 91207206 -30636650 + L1_Mur3 LINE L1 2038 2602 -3278 3 1280 476 254 0 9 chr11 91207224 91207339 -30636517 + Lx7 LINE L1 5861 5974 -1722 3 1280 4509 159 147 21 chr11 91207345 91208255 -30635601 + RLTR25B LTR ERVK 1 1025 -3 3 1280 1592 249 82 2 chr11 91208262 91208700 -30635156 + Lx7 LINE L1 5979 6451 -1245 3 1280 1014 208 0 5 chr11 91208697 91208890 -30634966 + Lx7 LINE L1 6356 6547 -1149 3 1280 755 122 135 0 chr11 91208892 91209048 -30634808 - RLTR47_MM LTR ERV1 0 532 356 3 1280 4190 52 9 0 chr11 91209050 91209636 -30634220 - L1_Mus2 LINE L1 -457 6109 5519 3 1280 3528 64 29 41 chr11 91209638 91210127 -30633729 + L1_Mus2 LINE L1 6083 6565 -1 3 1280 1816 108 157 6 chr11 91210142 91210460 -30633396 - RLTR47_MM LTR ERV1 -166 366 1 3 1280 1155 200 92 8 chr11 91210460 91210638 -30633218 + Lx6 LINE L1 6535 6715 -745 3 1280 303 0 0 60 chr11 91210638 91210688 -30633168 + (TAA)n Simple_repeat Simple_repeat 3 49 0 3 1280 1155 200 92 8 chr11 91210688 91210771 -30633085 + Lx6 LINE L1 6716 6818 -642 3 1280 458 142 37 209 chr11 91210771 91210848 -30633008 + RMER6B LTR ERVK 1 59 -402 3 1280 180 0 0 0 chr11 91210848 91210868 -30632988 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1280 458 142 37 209 chr11 91210868 91210924 -30632932 + RMER6B LTR ERVK 60 111 -350 3 1280 2071 148 107 17 chr11 91210925 91211344 -30632512 + RMER6B LTR ERVK 1 457 -4 3 1280 894 176 82 5 chr11 91211363 91211557 -30632299 + Lx7 LINE L1 6826 7034 -662 3 1280 859 249 19 14 chr11 91211605 91211813 -30632043 - B3 SINE B2 -4 212 4 3 1280 228 412 23 0 chr11 91211944 91212075 -30631781 + MIR SINE MIR 53 186 -76 3 1280 228 343 69 35 chr11 91212335 91212480 -30631376 + L2a LINE L2 1453 1602 -1817 3 1280 504 0 0 0 chr11 91212507 91212563 -30631293 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1280 417 308 37 31 chr11 91212781 91212942 -30630914 - RSINE1 SINE B4 0 165 4 3 1280 184 339 76 38 chr11 91213116 91213300 -30630556 + L2a LINE L2 3222 3412 -14 3 1280 519 17 0 0 chr11 91213502 91213562 -30630294 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 3 1280 497 268 102 0 chr11 91213698 91213855 -30630001 - MER67D LTR ERV1 -341 173 1 3 1280 21 0 0 0 chr11 91213948 91213969 -30629887 + AT_rich Low_complexity Low_complexity 1 21 0 3 1280 441 0 0 0 chr11 91215517 91215566 -30628290 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1280 230 271 141 0 chr11 91215574 91215659 -30628197 + MIRb SINE MIR 106 202 -66 3 1280 576 29 0 0 chr11 91215695 91215765 -30628091 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1280 2003 134 6 0 chr11 91215993 91216314 -30627542 + L1_Mm LINE L1 5011 5333 -550 3 1280 255 255 62 115 chr11 91218055 91218281 -30625575 + RMER15 LTR ERVL 8 221 -354 3 1280 3047 202 43 13 chr11 91218381 91219004 -30624852 - RLTR26 LTR ERVK 0 642 1 3 1280 367 288 33 33 chr11 91219042 91219164 -30624692 + RMER15 LTR ERVL 359 480 -95 3 1280 180 77 0 0 chr11 91219340 91219366 -30624490 + (CAAG)n Simple_repeat Simple_repeat 1 26 0 3 1280 213 65 0 0 chr11 91220278 91220309 -30623547 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1280 198 0 0 0 chr11 91220318 91220340 -30623516 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 3 1280 4012 167 90 72 chr11 91221411 91222297 -30621559 - RMER19B LTR ERVK 0 902 1 3 1280 995 220 5 36 chr11 91222543 91222765 -30621091 - B3 SINE B2 -1 215 1 3 1280 528 358 16 10 chr11 91222855 91223047 -30620809 + ORR1E LTR MaLR 1 193 -166 3 1280 469 321 0 41 chr11 91223363 91223383 -30620473 + RSINE1 SINE B4 5 24 -141 3 1280 3305 64 33 2 chr11 91223383 91223806 -30620050 + RLTR10C LTR ERVK 1 436 0 3 1280 469 321 0 41 chr11 91223806 91223931 -30619925 + RSINE1 SINE B4 25 144 -21 3 1280 996 314 4 30 chr11 91224727 91224996 -30618860 - B4A SINE B4 0 292 31 3 1280 469 320 86 26 chr11 91225073 91225224 -30618632 - RSINE1 SINE B4 0 165 6 3 1280 534 119 0 0 chr11 91225722 91225806 -30618050 + (TAA)n Simple_repeat Simple_repeat 1 84 0 3 19 808 313 10 21 chr11 91226000 91226290 -30617566 + B4A SINE B4 2 288 -4 3 1281 201 213 0 0 chr11 91226295 91226342 -30617514 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1281 426 277 90 85 chr11 91226435 91226636 -30617220 + B3 SINE B2 2 203 -13 3 1281 316 291 18 55 chr11 91226768 91226877 -30616979 + MLT1H2 LTR MaLR 80 184 -305 3 1281 216 349 52 37 chr11 91228239 91228373 -30615483 - B3A SINE B2 -21 177 42 3 1281 1064 216 41 25 chr11 91230587 91230829 -30613027 - Lx5 LINE L1 -3 7047 6802 3 1281 358 244 8 23 chr11 91230876 91231006 -30612850 + CT-rich Low_complexity Low_complexity 3 130 0 4 1281 242 182 0 29 chr11 91231317 91231385 -30612471 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 4 1281 480 48 0 0 chr11 91231625 91231688 -30612168 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 4 1281 300 91 0 0 chr11 91232033 91232077 -30611779 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 1281 4478 112 9 16 chr11 91232098 91232701 -30611155 - Lx3B LINE L1 0 6973 6375 4 1281 186 71 0 0 chr11 91232701 91232729 -30611127 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4 1281 4478 112 9 16 chr11 91232729 91232807 -30611049 - Lx3B LINE L1 -599 6374 6297 4 1281 530 188 14 79 chr11 91232848 91232987 -30610869 + RLTR9A LTR ERVK 1 130 -238 4 1281 4594 232 29 24 chr11 91232995 91234076 -30609780 + Lx7 LINE L1 6282 7367 -329 4 1281 456 111 0 0 chr11 91234089 91234161 -30609695 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1281 427 180 39 15 chr11 91234759 91234889 -30608967 + C-rich Low_complexity Low_complexity 4 136 0 4 1281 324 0 0 0 chr11 91235188 91235224 -30608632 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1281 2789 123 39 0 chr11 91235301 91235732 -30608124 - Lx3C LINE L1 -2 6974 6527 4 1281 1710 134 24 50 chr11 91235732 91236069 -30607787 - Lx3C LINE L1 -724 6252 5925 4 1281 2644 123 3 2 chr11 91236046 91236465 -30607391 + Lx3C LINE L1 5509 5924 -1052 4 1281 233 29 29 0 chr11 91236478 91236512 -30607344 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1281 631 325 17 38 chr11 91237811 91238099 -30605757 - B4A SINE B4 -8 284 3 4 1281 186 43 0 0 chr11 91238470 91238493 -30605363 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1281 21 0 0 0 chr11 91238499 91238520 -30605336 + AT_rich Low_complexity Low_complexity 1 21 0 4 1281 459 0 0 0 chr11 91238772 91238823 -30605033 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 4 1281 408 55 0 0 chr11 91238825 91238880 -30604976 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1281 497 357 7 0 chr11 91238881 91239024 -30604832 - RSINE1 SINE B4 -20 145 2 4 1281 324 70 0 0 chr11 91239527 91239570 -30604286 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1281 22 35 0 0 chr11 91239645 91239674 -30604182 + AT_rich Low_complexity Low_complexity 1 29 0 4 1281 419 308 33 0 chr11 91240693 91240813 -30603043 + RSINE1 SINE B4 6 129 -36 4 1281 273 222 0 0 chr11 91240982 91241045 -30602811 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1281 741 235 122 26 chr11 91242010 91242233 -30601623 - ORR1D1 LTR MaLR 0 384 138 4 1281 987 83 0 8 chr11 91242215 91242349 -30601507 + B1_Mus1 SINE Alu 16 148 0 4 1281 219 103 0 0 chr11 91242350 91242389 -30601467 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 4 1281 2141 162 46 22 chr11 91242404 91242819 -30601037 + RMER4A LTR ERVK 33 457 -9 4 1281 906 200 16 37 chr11 91242790 91242820 -30601036 - ORR1D1 LTR MaLR -187 187 164 4 1281 180 0 0 0 chr11 91242820 91242840 -30601016 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1281 906 200 16 37 chr11 91242840 91242996 -30600860 - ORR1D1 LTR MaLR -211 163 5 4 1281 231 220 0 0 chr11 91243009 91243059 -30600797 + Lx7 LINE L1 7251 7300 -396 4 1281 490 252 95 15 chr11 91243806 91243979 -30599877 - MTEb LTR MaLR 0 379 199 4 1281 297 167 0 0 chr11 91245029 91245083 -30598773 + CT-rich Low_complexity Low_complexity 3 56 0 4 1281 4408 117 48 3 chr11 91245662 91246348 -30597508 + Lx2 LINE L1 6281 6997 0 4 1281 515 261 291 44 chr11 91246883 91247161 -30596695 - MTEa LTR MaLR 0 379 33 4 1281 695 237 58 5 chr11 91247388 91247596 -30596260 - ORR1D1 LTR MaLR -8 366 148 4 1281 426 69 0 0 chr11 91247596 91247654 -30596202 + (AGGGGG)n Simple_repeat Simple_repeat 5 62 0 4 1281 28 0 0 0 chr11 91248236 91248264 -30595592 + AT_rich Low_complexity Low_complexity 1 28 0 4 1281 45 0 0 0 chr11 91248330 91248375 -30595481 + AT_rich Low_complexity Low_complexity 1 45 0 4 1281 21 0 0 0 chr11 91248432 91248453 -30595403 + AT_rich Low_complexity Low_complexity 1 21 0 4 1281 3338 258 80 20 chr11 91248477 91249410 -30594446 - Lx6 LINE L1 0 7460 6472 4 1281 1113 47 0 0 chr11 91249778 91249926 -30593930 + L1Md_F2 LINE L1 6423 6570 -12 4 1281 22 70 0 0 chr11 91249926 91249969 -30593887 + AT_rich Low_complexity Low_complexity 1 43 0 4 1281 255 296 42 0 chr11 91250138 91250209 -30593647 + ID4 SINE ID 2 75 -8 4 1281 638 246 202 0 chr11 91250319 91250502 -30593354 - ID_B1 SINE B4 -2 222 3 4 1281 690 47 0 0 chr11 91251100 91251186 -30592670 + (CTTAT)n Simple_repeat Simple_repeat 2 87 0 4 1281 586 142 11 54 chr11 91251202 91251388 -30592468 + (TATG)n Simple_repeat Simple_repeat 1 178 0 4 1281 467 182 18 6 chr11 91251356 91251522 -30592334 + (TCTA)n Simple_repeat Simple_repeat 3 170 0 4 1281 278 286 73 45 chr11 91252321 91252431 -30591425 + MER5A DNA MER1_type 1 113 -76 4 1281 43 85 0 0 chr11 91252749 91252855 -30591001 + AT_rich Low_complexity Low_complexity 1 106 0 4 1281 393 214 60 0 chr11 91252909 91252993 -30590863 - PB1D9 SINE Alu -8 112 24 4 1281 492 32 0 0 chr11 91255426 91255488 -30588368 + (CAAAA)n Simple_repeat Simple_repeat 4 65 0 4 1281 408 41 40 27 chr11 91255641 91255716 -30588140 + (TTTTG)n Simple_repeat Simple_repeat 1 76 0 4 1281 691 263 92 5 chr11 91255948 91256143 -30587713 - B3 SINE B2 0 216 5 4 1281 385 319 113 81 chr11 91257582 91258053 -30585803 + MLT1D LTR MaLR 3 485 -20 4 1281 1038 314 24 29 chr11 91258695 91259072 -30584784 + MTEa LTR MaLR 5 379 0 4 1281 307 250 28 189 chr11 91261101 91261244 -30582612 + ID_B1 SINE B4 94 213 -11 4 1281 246 235 0 0 chr11 91261246 91261327 -30582529 + (CACAA)n Simple_repeat Simple_repeat 4 84 0 4 1281 193 322 118 46 chr11 91261547 91261785 -30582071 - MIR SINE MIR 0 262 8 4 1281 609 249 35 0 chr11 91262106 91262275 -30581581 - Lx5 LINE L1 -8 7042 6868 4 1281 4753 57 0 3 chr11 91262285 91262887 -30580969 + L1Md_F2 LINE L1 4987 5586 -297 4 1281 8023 47 2 2 chr11 91262887 91263882 -30579974 + L1Md_F2 LINE L1 5587 6581 -1 4 1281 1778 222 25 3 chr11 91264045 91264407 -30579449 - MTC LTR MaLR -51 370 1 4 1281 2377 187 20 63 chr11 91265513 91266056 -30577800 + RLTR20B3 LTR ERVK 1 520 -57 4 1281 1236 266 108 26 chr11 91266428 91266856 -30577000 + Lx8 LINE L1 6687 7149 -324 4 1281 780 284 95 18 chr11 91267405 91267688 -30576168 + Lx8 LINE L1 7135 7439 -34 4 1281 4427 45 0 0 chr11 91268131 91268699 -30575157 - L1Md_F2 LINE L1 0 6582 6033 4 1281 3590 37 5 0 chr11 91268699 91269167 -30574689 + L1Md_F2 LINE L1 5548 6017 -565 4 1281 22 0 0 0 chr11 91270098 91270120 -30573736 + AT_rich Low_complexity Low_complexity 1 22 0 4 1281 26 0 0 0 chr11 91270332 91270358 -30573498 + AT_rich Low_complexity Low_complexity 1 26 0 4 1281 266 26 53 0 chr11 91270436 91270474 -30573382 + (TTCTC)n Simple_repeat Simple_repeat 1 40 0 4 1281 4799 137 40 5 chr11 91270474 91271259 -30572597 - Lx LINE L1 -44 6610 5799 4 1281 555 339 94 24 chr11 91271433 91272062 -30571794 - L1MC4a LINE L1 -1859 6023 5351 4 1281 3408 280 62 12 chr11 91272145 91273356 -30570500 - Lx9 LINE L1 -19 7625 6355 4 1281 889 286 100 30 chr11 91273647 91274018 -30569838 - Lx8 LINE L1 -9 7464 7068 4 1281 563 94 47 16 chr11 91274419 91274548 -30569308 + (TCTCTG)n Simple_repeat Simple_repeat 6 138 0 4 1281 1468 234 36 83 chr11 91274851 91275318 -30568538 + RLTR11A2 LTR ERVK 24 468 -59 4 1281 303 361 123 27 chr11 91275496 91275789 -30568067 - Lx8 LINE L1 -134 7339 7019 4 1281 260 230 117 29 chr11 91276200 91276303 -30567553 + MER3 DNA MER1_type 96 207 -2 4 1281 596 160 0 0 chr11 91276720 91276814 -30567042 + MTD LTR MaLR 4 97 -322 4 1281 517 255 56 14 chr11 91276824 91276967 -30566889 + MTD LTR MaLR 263 411 -8 4 1281 244 325 130 35 chr11 91277475 91277644 -30566212 - MLT1K LTR MaLR -49 546 362 4 1281 5171 166 16 14 chr11 91278082 91278986 -30564870 - Lx2B LINE L1 -1 6999 6095 4 1281 1547 179 55 3 chr11 91279103 91279411 -30564445 - ORR1C1 LTR MaLR 0 378 55 4 1281 1707 172 179 8 chr11 91279457 91279702 -30564154 - Lx5 LINE L1 -8 7042 6749 4 1281 465 19 0 0 chr11 91279702 91279756 -30564100 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1281 522 0 0 0 chr11 91279756 91279813 -30564043 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1281 1707 172 179 8 chr11 91279813 91279946 -30563910 - Lx5 LINE L1 -302 6748 6599 4 1281 617 198 0 0 chr11 91279945 91280056 -30563800 + Lx5 LINE L1 6488 6598 -452 4 1281 234 0 0 0 chr11 91280177 91280203 -30563653 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1281 227 342 91 5 chr11 91280678 91280898 -30562958 - L1MA6 LINE L1 -123 6177 5939 4 1281 454 290 17 7 chr11 91280987 91281195 -30562661 - L1MA6 LINE L1 -376 5924 5714 4 1281 723 179 0 54 chr11 91282184 91282332 -30561524 + B1_Mur4 SINE Alu 2 141 -9 4 1281 228 35 0 0 chr11 91282339 91282368 -30561488 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1281 309 390 23 6 chr11 91283197 91283370 -30560486 - L1M5 LINE L1 -2583 3563 3388 4 1281 919 236 59 5 chr11 91283370 91283574 -30560282 - B3 SINE B2 0 216 2 4 1281 308 78 0 38 chr11 91283646 91283699 -30560157 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 1281 1199 35 0 7 chr11 91283882 91284025 -30559831 - B1_Mus2 SINE Alu -1 146 5 4 1281 756 329 75 19 chr11 91284175 91284482 -30559374 + MLT2B1 LTR ERVL 1 324 -196 4 1281 791 340 33 31 chr11 91284479 91284901 -30558955 + MT2A LTR ERVL 8 430 -103 4 1281 512 30 15 0 chr11 91284966 91285032 -30558824 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1281 241 180 0 22 chr11 91285189 91285280 -30558576 + CT-rich Low_complexity Low_complexity 1 89 0 4 1281 333 0 0 0 chr11 91285282 91285319 -30558537 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1281 261 255 0 18 chr11 91285973 91286029 -30557827 + MTEa LTR MaLR 12 66 -293 4 1281 484 341 22 38 chr11 91286093 91286276 -30557580 - B3 SINE B2 -34 182 3 4 1281 318 315 45 78 chr11 91286278 91286580 -30557276 + MTEa LTR MaLR 64 368 -11 4 1281 271 375 0 0 chr11 91287370 91287458 -30556398 + MTE2b LTR MaLR 10 97 -282 4 1281 981 309 32 7 chr11 91287459 91287769 -30556087 + MTE2b LTR MaLR 58 375 -4 4 1281 267 31 0 0 chr11 91287926 91287958 -30555898 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 4 1281 513 0 0 0 chr11 91288552 91288609 -30555247 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1281 773 222 9 81 chr11 91288948 91289159 -30554697 + B3A SINE B2 3 198 0 4 1281 189 132 0 0 chr11 91289481 91289519 -30554337 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1281 489 17 0 0 chr11 91289612 91289670 -30554186 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1281 385 330 30 0 chr11 91290410 91290510 -30553346 - ID_B1 SINE B4 -7 217 115 5 1281 362 281 195 16 chr11 91290510 91290525 -30553331 - B1F2 SINE Alu -1 105 4 5 1281 180 97 0 0 chr11 91290800 91290831 -30553025 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1281 303 305 57 0 chr11 91290833 91290938 -30552918 - L1MEg LINE L1 -4140 1944 1834 5 1281 1297 244 199 20 chr11 91291022 91291470 -30552386 - RMER20B LTR ERVK -25 602 75 5 1281 1580 141 23 0 chr11 91291470 91291732 -30552124 + Lx2 LINE L1 6730 6997 0 5 1281 904 80 29 0 chr11 91291799 91291937 -30551919 - L1_Mus2 LINE L1 0 6566 6425 5 1281 340 219 19 3 chr11 91291976 91292049 -30551807 - RMER20B LTR ERVK -426 90 16 5 1281 254 226 24 0 chr11 91293920 91294004 -30549852 + CT-rich Low_complexity Low_complexity 3 88 0 5 1281 402 340 143 36 chr11 91295022 91295468 -30548388 - MLT1F2 LTR MaLR -6 554 61 5 1281 239 274 51 0 chr11 91295746 91295863 -30547993 + Lx9 LINE L1 7521 7643 -1 5 1281 510 296 6 41 chr11 91296483 91296652 -30547204 + RSINE1 SINE B4 3 165 0 5 1281 503 299 50 70 chr11 91296795 91297094 -30546762 + Kanga11a DNA Tc2 673 965 -5 5 1281 273 153 111 0 chr11 91297723 91297795 -30546061 + MLT2B3 LTR ERVL 3 82 -472 5 1281 492 18 0 0 chr11 91297798 91297855 -30546001 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1281 262 321 121 60 chr11 91297957 91298106 -30545750 + MLT2C2 LTR ERVL 402 559 0 5 1281 378 121 0 0 chr11 91299129 91299195 -30544661 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1281 231 61 0 0 chr11 91299195 91299227 -30544629 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 5 1281 521 311 28 37 chr11 91299584 91299801 -30544055 - B3 SINE B2 0 216 2 5 1281 21 36 0 0 chr11 91299956 91299984 -30543872 + AT_rich Low_complexity Low_complexity 1 28 0 5 1281 247 267 38 48 chr11 91300401 91300490 -30543366 - B3A SINE B2 -64 134 30 5 1281 330 204 0 0 chr11 91300491 91300584 -30543272 + CT-rich Low_complexity Low_complexity 2 94 0 5 1281 1079 117 0 6 chr11 91300585 91300766 -30543090 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1281 189 121 0 0 chr11 91300766 91300799 -30543057 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1281 328 231 88 0 chr11 91300800 91300891 -30542965 - B1_Mm SINE Alu -2 145 47 5 1281 308 407 75 7 chr11 91300947 91301093 -30542763 - FordPrefect DNA Tip100 -1182 501 346 5 1281 4553 158 37 3 chr11 91301182 91301937 -30541919 + Lx4A LINE L1 6278 7058 0 5 1281 553 323 140 89 chr11 91302020 91302524 -30541332 + MLT1E2 LTR MaLR 69 622 -2 5 1281 264 344 52 41 chr11 91302569 91302666 -30541190 - FordPrefect DNA Tip100 -1478 205 108 5 1281 214 222 28 0 chr11 91302864 91302936 -30540920 + (CCCA)n Simple_repeat Simple_repeat 3 76 0 5 1281 606 28 0 0 chr11 91303005 91303077 -30540779 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1281 4100 75 0 12 chr11 91303195 91303813 -30540043 - L1Md_F2 LINE L1 0 6582 6005 5 1281 35038 4 1 1 chr11 91304074 91308924 -30534932 - L1Md_A LINE L1 0 6582 1732 5 1281 474 353 45 64 chr11 91308957 91309223 -30534633 + B4A SINE B4 2 262 -30 5 1281 278 287 0 11 chr11 91309262 91309357 -30534499 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1281 218 347 21 21 chr11 91309413 91309510 -30534346 - L2a LINE L2 -47 3379 3283 5 1281 24 32 0 0 chr11 91309632 91309663 -30534193 + AT_rich Low_complexity Low_complexity 1 31 0 5 1281 1000 83 7 0 chr11 91309872 91310016 -30533840 - L1_Mus1 LINE L1 0 6567 6423 5 1281 3325 97 0 2 chr11 91310016 91310493 -30533363 + L1_Mm LINE L1 5293 5768 -115 5 1281 399 319 8 32 chr11 91311266 91311389 -30532467 + RSINE1 SINE B4 5 124 -41 5 1281 264 30 0 0 chr11 91311389 91311422 -30532434 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1281 267 243 62 54 chr11 91312405 91312512 -30531344 - MIR SINE MIR -46 222 117 5 1281 3124 54 0 0 chr11 91312683 91313069 -30530787 - L1_Mus1 LINE L1 -1 6566 6181 5 1281 1460 119 0 8 chr11 91313194 91313431 -30530425 + Lx LINE L1 6418 6652 -2 5 1281 25 0 0 0 chr11 91313461 91313486 -30530370 + AT_rich Low_complexity Low_complexity 1 25 0 5 1281 21 57 0 0 chr11 91313871 91313906 -30529950 + AT_rich Low_complexity Low_complexity 1 35 0 5 1281 270 376 50 44 chr11 91314821 91315002 -30528854 + MLT2F LTR ERVL 251 432 -231 5 1281 225 0 0 0 chr11 91315009 91315034 -30528822 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1281 508 324 81 55 chr11 91315085 91315810 -30528046 - L1MC3 LINE L1 -495 7290 6547 5 1281 295 388 22 7 chr11 91315825 91315960 -30527896 + MLT2F LTR ERVL 458 594 -69 5 1281 26 0 0 0 chr11 91316103 91316129 -30527727 + AT_rich Low_complexity Low_complexity 1 26 0 5 1281 192 77 0 0 chr11 91316221 91316247 -30527609 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 5 1281 337 408 58 0 chr11 91316313 91316504 -30527352 - MER90a LTR ERV1 -61 553 352 5 1281 784 330 95 56 chr11 91316769 91317180 -30526676 + MER21B LTR ERV1 13 439 -424 5 1281 605 313 34 45 chr11 91317468 91317884 -30525972 + MER4B-int LTR ERV1 3142 3481 -3277 5 1281 1386 233 67 5 chr11 91318450 91318839 -30525017 + Lx9 LINE L1 7071 7483 -161 5 1281 2244 187 31 107 chr11 91318842 91319113 -30524743 - RLTR21 LTR ERVK -5 1567 1304 5 1281 429 127 0 0 chr11 91319113 91319192 -30524664 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1281 2244 187 31 107 chr11 91319192 91319367 -30524489 - RLTR21 LTR ERVK -269 1303 1128 5 1281 287 49 24 0 chr11 91319367 91319408 -30524448 + (CATA)n Simple_repeat Simple_repeat 1 42 0 5 1281 2244 147 62 97 chr11 91319408 91319591 -30524265 - RLTR21 LTR ERVK -381 1191 1056 5 1281 1979 171 9 0 chr11 91319657 91319973 -30523883 - RLTR21 LTR ERVK -1253 319 1 5 1281 1227 48 0 0 chr11 91320023 91320170 -30523686 - B1_Mm SINE Alu 0 147 1 5 1281 486 311 75 57 chr11 91320197 91320528 -30523328 + RMER5 LTR ERV1 174 510 -24 5 1281 183 333 16 0 chr11 91320880 91320943 -30522913 - MIRc SINE MIR -142 126 63 5 1281 292 327 188 6 chr11 91321473 91321656 -30522200 + ORR1E LTR MaLR 95 310 -49 5 1281 1113 310 56 23 chr11 91321671 91322192 -30521664 + Lx8 LINE L1 6761 7298 -175 5 1281 398 94 0 15 chr11 91322884 91322949 -30520907 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1281 498 70 0 0 chr11 91324596 91324667 -30519189 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1281 301 303 26 13 chr11 91324668 91324745 -30519111 - B4A SINE B4 -207 85 8 5 1281 228 176 39 0 chr11 91325274 91325325 -30518531 + GA-rich Low_complexity Low_complexity 3 55 0 5 1281 360 0 0 0 chr11 91326346 91326386 -30517470 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1281 622 337 62 52 chr11 91326618 91326906 -30516950 - B4A SINE B4 0 292 2 5 1281 406 344 0 39 chr11 91327358 91327488 -30516368 + RSINE1 SINE B4 22 146 -19 5 1281 449 34 0 17 chr11 91327497 91327557 -30516299 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1281 282 279 58 0 chr11 91328450 91328554 -30515302 + PB1D9 SINE Alu 3 112 -8 5 1281 182 37 37 0 chr11 91329604 91329631 -30514225 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 5 1281 6456 185 14 14 chr11 91329723 91331379 -30512477 - Lx2B LINE L1 -14 6986 5336 5 1281 2447 160 11 0 chr11 91331376 91331820 -30512036 + Lx2B LINE L1 4783 5231 -646 5 1281 209 250 13 53 chr11 91331932 91332008 -30511848 + (TATG)n Simple_repeat Simple_repeat 2 74 0 5 1281 204 118 29 0 chr11 91332195 91332229 -30511627 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 5 1281 1125 287 28 30 chr11 91332600 91332963 -30510893 - Lx6 LINE L1 -2 7458 7097 5 1281 464 181 24 0 chr11 91332963 91333046 -30510810 - Lx6 LINE L1 -315 7145 7061 5 1281 1138 65 18 0 chr11 91334297 91334465 -30509391 + (TCTA)n Simple_repeat Simple_repeat 2 172 0 5 1281 558 0 0 0 chr11 91335215 91335277 -30508579 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1281 320 325 53 82 chr11 91335308 91335479 -30508377 - RMER15 LTR ERVL -70 505 340 5 1281 255 401 18 24 chr11 91335880 91336046 -30507810 + Lx7 LINE L1 6947 7111 -585 5 1281 1527 50 0 0 chr11 91336122 91336302 -30507554 + L1Md_F2 LINE L1 5407 5586 -297 5 1281 7987 50 1 4 chr11 91336302 91337300 -30506556 + L1Md_F2 LINE L1 5587 6581 -1 5 1281 23 0 0 0 chr11 91337551 91337574 -30506282 + AT_rich Low_complexity Low_complexity 1 23 0 5 1281 334 330 91 28 chr11 91337691 91338012 -30505844 + L1MD1 LINE L1 5532 5872 -370 5 1281 369 0 0 0 chr11 91338012 91338053 -30505803 + (CATAT)n Simple_repeat Simple_repeat 2 42 0 5 1281 334 338 94 27 chr11 91338053 91338215 -30505641 + L1MD1 LINE L1 5873 6048 -131 5 1281 396 0 0 0 chr11 91338224 91338268 -30505588 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1281 23 0 0 0 chr11 91338545 91338568 -30505288 + AT_rich Low_complexity Low_complexity 1 23 0 5 1281 325 333 52 12 chr11 91338571 91338744 -30505112 + B3A SINE B2 3 182 -16 5 1281 22 0 0 0 chr11 91338799 91338821 -30505035 + AT_rich Low_complexity Low_complexity 1 22 0 5 1281 228 282 85 28 chr11 91338837 91338943 -30504913 + PB1D7 SINE Alu 9 120 0 5 1281 204 288 15 0 chr11 91338957 91339023 -30504833 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1281 2106 117 9 9 chr11 91339687 91340006 -30503850 - ORR1A2 LTR MaLR -8 319 1 5 1281 190 358 0 95 chr11 91340110 91340215 -30503641 - L2b LINE L2 -2 3373 3279 5 1281 393 381 63 0 chr11 91340403 91340626 -30503230 + MLT1B LTR MaLR 20 256 -134 5 1281 382 294 63 0 chr11 91340819 91340962 -30502894 + B3 SINE B2 3 154 -62 5 1281 424 316 11 0 chr11 91340971 91341148 -30502708 - L1_Mur3 LINE L1 -423 5457 5279 5 1281 249 319 105 9 chr11 91341217 91341254 -30502602 - Lx8 LINE L1 -96 7377 7330 5 1281 402 21 0 0 chr11 91341254 91341301 -30502555 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1281 249 319 105 9 chr11 91341301 91341377 -30502479 - Lx8 LINE L1 -144 7329 7254 5 1281 502 286 55 42 chr11 91341450 91341682 -30502174 - Lx8 LINE L1 -593 7051 6708 5 1281 251 261 114 65 chr11 91341802 91341925 -30501931 - L1M2 LINE L1 -1147 4996 4868 5 1281 600 14 0 0 chr11 91342019 91342088 -30501768 + (TAA)n Simple_repeat Simple_repeat 1 69 0 5 1281 1379 187 61 35 chr11 91342431 91342741 -30501115 - Lx4B LINE L1 0 7058 6741 6 1281 360 0 0 0 chr11 91342864 91342904 -30500952 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1281 1964 120 40 29 chr11 91342974 91343325 -30500531 - Lx2 LINE L1 -10 6987 6633 6 1281 1429 127 0 13 chr11 91343325 91343549 -30500307 + Lx2 LINE L1 6413 6633 -364 6 1281 287 357 0 0 chr11 91343610 91343694 -30500162 - B1F SINE Alu -51 98 15 6 1281 627 26 0 0 chr11 91344596 91344673 -30499183 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1281 688 185 46 0 chr11 91344679 91344809 -30499047 + ORR1D1 LTR MaLR 6 141 -233 6 1281 989 40 8 0 chr11 91344809 91344935 -30498921 + (TTCTC)n Simple_repeat Simple_repeat 4 130 0 6 1281 206 167 0 45 chr11 91344992 91345036 -30498820 + CT-rich Low_complexity Low_complexity 1 42 0 6 1281 585 78 25 34 chr11 91345083 91345202 -30498654 - L1_Mus3 LINE L1 0 6638 6521 6 1281 1578 83 28 0 chr11 91345284 91345502 -30498354 + L1_Mus1 LINE L1 6344 6567 0 6 1281 246 62 0 0 chr11 91345533 91345565 -30498291 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1281 697 238 154 32 chr11 91345802 91346023 -30497833 + ORR1D1 LTR MaLR 127 374 0 6 1281 219 69 0 0 chr11 91346101 91346130 -30497726 + (TCTCC)n Simple_repeat Simple_repeat 1 29 0 6 1281 511 230 35 0 chr11 91346196 91346309 -30497547 - PB1D10 SINE Alu 0 117 1 6 1281 2088 203 41 61 chr11 91346403 91346464 -30497392 - Lx9 LINE L1 -140 7504 7435 6 1281 243 0 0 0 chr11 91346464 91346491 -30497365 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1281 2088 203 41 61 chr11 91346491 91346989 -30496867 - Lx9 LINE L1 -210 7434 6958 6 1281 221 0 0 33 chr11 91348331 91348361 -30495495 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 1281 440 297 136 21 chr11 91348736 91349232 -30494624 + L1ME3B LINE L1 5341 5908 -332 6 1281 206 118 0 0 chr11 91349232 91349266 -30494590 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1281 403 372 6 13 chr11 91349358 91349516 -30494340 + RSINE1 SINE B4 3 159 -6 6 1281 242 309 123 36 chr11 91350184 91350379 -30493477 - RMER4A LTR ERVK -251 215 4 6 1281 1210 110 36 5 chr11 91350491 91350683 -30493173 - Lx3_Mus LINE L1 -8 7001 6804 6 1281 21 0 0 0 chr11 91351780 91351801 -30492055 + AT_rich Low_complexity Low_complexity 1 21 0 6 1281 2041 33 0 8 chr11 91351811 91352059 -30491797 + L1Md_F2 LINE L1 6324 6569 -13 6 1281 839 266 29 42 chr11 91352072 91352311 -30491545 - Lx5 LINE L1 -1 7049 6814 6 1281 5420 178 16 6 chr11 91352342 91353302 -30490554 - Lx5 LINE L1 -460 6590 5622 6 1281 2176 205 52 20 chr11 91353289 91353746 -30490110 + Lx5 LINE L1 6574 7045 -5 6 1281 827 342 14 21 chr11 91354245 91354532 -30489324 + B4 SINE B4 7 291 -1 6 1281 28 0 0 0 chr11 91355017 91355045 -30488811 + AT_rich Low_complexity Low_complexity 1 28 0 6 1281 616 279 87 33 chr11 91355046 91355346 -30488510 - L1MC1 LINE L1 -20 6313 5998 6 1281 9635 154 21 9 chr11 91355385 91355780 -30488076 - L1_Mur2 LINE L1 -388 5489 5095 6 1281 6445 39 0 1 chr11 91355780 91356555 -30487301 - L1Md_T LINE L1 0 6582 5809 6 160 9635 154 21 9 chr11 91356555 91357886 -30485970 - L1_Mur2 LINE L1 -783 5094 3742 6 1282 6447 125 44 19 chr11 91357885 91359014 -30484842 + Lx LINE L1 5499 6653 -1 6 1282 586 240 76 5 chr11 91359050 91359247 -30484609 - L1MC1 LINE L1 -386 5947 5737 6 1282 381 345 83 33 chr11 91359330 91359606 -30484250 - L1MC1 LINE L1 -719 5625 5336 6 1282 324 0 0 0 chr11 91359638 91359674 -30484182 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1282 386 293 101 30 chr11 91359688 91359955 -30483901 - L1MC1 LINE L1 -872 5274 4989 6 1282 591 236 200 51 chr11 91361630 91361925 -30481931 - RMER4B LTR ERVK 0 585 247 6 1282 312 247 0 0 chr11 91361970 91362124 -30481732 + (CAG)n Simple_repeat Simple_repeat 1 154 0 6 1282 959 204 146 0 chr11 91362151 91362391 -30481465 - RMER4B LTR ERVK -310 275 1 6 1282 362 295 59 44 chr11 91363759 91363894 -30479962 - ORR1D1 LTR MaLR -2 372 236 6 1282 848 243 5 0 chr11 91364727 91364971 -30478885 + L1_Mur2 LINE L1 902 1176 -6536 6 1282 342 353 67 87 chr11 91365158 91365230 -30478626 - B4A SINE B4 0 292 212 6 1282 210 37 0 0 chr11 91365230 91365257 -30478599 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1282 342 353 67 87 chr11 91365257 91365392 -30478464 - B4A SINE B4 -81 211 90 6 1282 1459 82 186 46 chr11 91366169 91366292 -30477564 + L1_Mus3 LINE L1 6320 6444 -194 6 1282 306 0 0 0 chr11 91366292 91366326 -30477530 + (GGGTG)n Simple_repeat Simple_repeat 4 37 0 6 1282 1459 82 186 46 chr11 91366326 91366482 -30477374 + L1_Mus3 LINE L1 6445 6638 0 6 1282 288 0 0 0 chr11 91367144 91367176 -30476680 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1282 286 309 49 62 chr11 91368634 91368757 -30475099 - Lx7 LINE L1 -349 7347 7225 6 1282 468 0 0 0 chr11 91368757 91368809 -30475047 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1282 286 309 49 62 chr11 91368809 91368847 -30475009 - Lx7 LINE L1 -472 7224 7188 6 1282 333 0 0 0 chr11 91369183 91369220 -30474636 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1282 342 188 12 24 chr11 91369729 91369811 -30474045 + (CAGAGA)n Simple_repeat Simple_repeat 6 86 0 6 1282 598 169 15 15 chr11 91369813 91369945 -30473911 + GA-rich Low_complexity Low_complexity 3 134 0 6 1282 1072 253 36 10 chr11 91369945 91370362 -30473494 - MT2A LTR ERVL -82 451 1 6 1282 216 0 0 0 chr11 91371256 91371280 -30472576 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1282 296 296 8 100 chr11 91371315 91371435 -30472421 - RLTR33 LTR ERVK -85 593 485 6 1282 342 264 25 76 chr11 91371440 91371559 -30472297 - RSINE1 SINE B4 -51 114 2 6 1282 204 125 0 0 chr11 91371568 91371600 -30472256 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1282 9840 50 12 0 chr11 91371900 91373815 -30470041 - L1Md_F2 LINE L1 -12 6570 4635 6 1282 1048 76 0 65 chr11 91374161 91374315 -30469541 + B1_Mus1 SINE Alu 3 146 -2 6 1282 216 270 16 0 chr11 91374576 91374639 -30469217 + CT-rich Low_complexity Low_complexity 2 65 0 6 1282 216 0 0 0 chr11 91374648 91374672 -30469184 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1282 297 316 10 40 chr11 91375502 91375601 -30468255 - MTEa LTR MaLR -209 170 75 6 1282 4279 65 4 0 chr11 91375605 91376382 -30467474 - L1_Mus1 LINE L1 -487 6080 5301 6 1282 3710 64 2 0 chr11 91376399 91376869 -30466987 + L1_Mus1 LINE L1 6097 6567 0 6 1282 198 0 0 0 chr11 91377291 91377313 -30466543 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 1282 892 253 77 48 chr11 91377313 91377649 -30466207 - Lx4B LINE L1 -21 7037 6692 6 1282 1866 131 10 0 chr11 91377644 91377942 -30465914 + Lx4B LINE L1 5708 6008 -1050 6 1282 714 24 0 0 chr11 91378460 91378544 -30465312 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 1282 22 56 0 0 chr11 91378639 91378675 -30465181 + AT_rich Low_complexity Low_complexity 1 36 0 6 1282 252 287 0 47 chr11 91379150 91379256 -30464600 - Lx7 LINE L1 -16 7680 7580 6 1282 283 232 0 0 chr11 91379359 91379428 -30464428 - Lx7 LINE L1 -384 7312 7244 6 1282 528 65 0 0 chr11 91379455 91379532 -30464324 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 6 1282 528 56 0 0 chr11 91380847 91380919 -30462937 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1282 678 286 7 7 chr11 91381345 91381486 -30462370 + RSINE1 SINE B4 1 141 -24 6 1282 444 19 0 0 chr11 91381487 91381540 -30462316 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1282 22 56 0 0 chr11 91381544 91381580 -30462276 + AT_rich Low_complexity Low_complexity 1 36 0 6 1282 25 0 0 0 chr11 91381904 91381929 -30461927 + AT_rich Low_complexity Low_complexity 1 25 0 6 1282 555 274 49 30 chr11 91382558 91382761 -30461095 + B3 SINE B2 4 210 -6 6 1282 234 128 0 0 chr11 91384107 91384146 -30459710 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1282 622 268 65 22 chr11 91384541 91384770 -30459086 + L1MA5 LINE L1 6043 6281 -19 6 1282 468 230 35 17 chr11 91385458 91385573 -30458283 + RMER4B LTR ERVK 279 395 -190 6 1282 704 193 13 7 chr11 91386224 91386375 -30457481 + RMER4B LTR ERVK 15 166 -419 6 1282 427 205 188 46 chr11 91386383 91386606 -30457250 + RMER4B LTR ERVK 279 571 -14 6 1282 12088 92 53 1 chr11 91387891 91390670 -30453186 + Lx3_Mus LINE L1 4073 6996 -13 6 1282 22 0 0 0 chr11 91390670 91390692 -30453164 + AT_rich Low_complexity Low_complexity 1 22 0 6 1282 26 30 0 0 chr11 91390752 91390785 -30453071 + AT_rich Low_complexity Low_complexity 1 33 0 6 1282 315 71 0 0 chr11 91390835 91390877 -30452979 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1282 310 313 63 88 chr11 91391039 91391277 -30452579 + ORR1E LTR MaLR 1 232 -127 6 1282 243 133 0 22 chr11 91391293 91391339 -30452517 + ORR1E LTR MaLR 333 377 -2 6 1282 189 0 0 0 chr11 91391777 91391798 -30452058 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1282 247 339 71 0 chr11 91391818 91391945 -30451911 + MIR SINE MIR 45 180 -82 6 1282 687 253 58 21 chr11 91393003 91393193 -30450663 - Lx8 LINE L1 -223 7250 7054 6 1282 303 140 0 0 chr11 91393200 91393250 -30450606 + (CAG)n Simple_repeat Simple_repeat 1 50 0 6 1282 678 47 0 0 chr11 91393448 91393534 -30450322 + (GGGAGA)n Simple_repeat Simple_repeat 5 90 0 6 1282 296 313 191 40 chr11 91393995 91394325 -30449531 - MTD LTR MaLR -19 402 23 6 1282 1783 18 0 88 chr11 91394776 91395026 -30448830 - L1Md_F3 LINE L1 -14 6570 6343 6 1282 849 325 44 0 chr11 91395369 91395640 -30448216 - MTE2b LTR MaLR -95 284 2 6 1282 1129 293 94 21 chr11 91396634 91397059 -30446797 - Lx8 LINE L1 -2 7471 7016 6 1282 531 82 0 0 chr11 91397191 91397264 -30446592 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1282 1373 68 26 26 chr11 91397514 91397709 -30446147 + B2_Mm2 SINE B2 1 195 0 6 1282 990 0 0 0 chr11 91398685 91398795 -30445061 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 1282 315 0 0 0 chr11 91399085 91399120 -30444736 + (TGG)n Simple_repeat Simple_repeat 1 35 0 6 1282 1084 205 290 3 chr11 91399158 91399451 -30444405 + MTD LTR MaLR 43 419 0 6 1282 21 71 0 0 chr11 91400382 91400424 -30443432 + AT_rich Low_complexity Low_complexity 1 42 0 6 1282 187 336 98 25 chr11 91400938 91401060 -30442796 + L2 LINE L2 2381 2511 -908 6 1282 1121 293 76 18 chr11 91401119 91401515 -30442341 + MTD LTR MaLR 1 419 0 6 1282 200 191 0 0 chr11 91401588 91401630 -30442226 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1282 188 235 15 0 chr11 91401633 91401701 -30442155 + GA-rich Low_complexity Low_complexity 2 70 0 6 1282 388 324 89 63 chr11 91401742 91402012 -30441844 - B4 SINE B4 -14 278 2 6 1282 4804 124 26 3 chr11 91402329 91403048 -30440808 - RMER19A LTR ERVK -1 736 1 6 1282 314 336 104 24 chr11 91403871 91404121 -30439735 - LTR50 LTR ERVL -182 613 344 6 1282 23 68 0 0 chr11 91405302 91405346 -30438510 + AT_rich Low_complexity Low_complexity 1 44 0 7 1282 21 0 0 0 chr11 91406321 91406342 -30437514 + AT_rich Low_complexity Low_complexity 1 21 0 7 1282 540 68 0 0 chr11 91407022 91407095 -30436761 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1282 426 218 331 25 chr11 91407263 91407423 -30436433 - B3 SINE B2 -7 209 1 7 1282 1545 32 11 0 chr11 91408192 91408377 -30435479 - B2_Mm1t SINE B2 -6 187 1 7 1282 287 363 79 111 chr11 91408576 91408855 -30435001 - MER21B LTR ERV1 -75 788 519 7 1282 1902 347 44 20 chr11 91408864 91409789 -30434067 + Lx8 LINE L1 6379 7325 -148 7 1282 180 0 0 0 chr11 91410474 91410494 -30433362 + (TA)n Simple_repeat Simple_repeat 1 20 0 7 1282 354 23 0 0 chr11 91410733 91410776 -30433080 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1282 430 323 116 29 chr11 91410875 91411047 -30432809 - B4A SINE B4 -97 195 9 7 1282 696 70 0 0 chr11 91411111 91411211 -30432645 + L1_Mus2 LINE L1 6467 6566 0 7 1282 318 310 174 37 chr11 91411257 91411555 -30432301 + L1MDa LINE L1 30 368 -6265 7 1282 254 378 18 9 chr11 91411715 91411827 -30432029 + L1MDa LINE L1 586 698 -5935 7 1282 379 305 25 17 chr11 91412002 91412122 -30431734 + B1_Mur1 SINE Alu 25 145 -4 7 1282 892 248 90 18 chr11 91412378 91412657 -30431199 - MER2 DNA MER2_type -32 313 15 7 1282 323 300 112 28 chr11 91412666 91412879 -30430977 + L1MDa LINE L1 2682 2909 -3628 7 1282 3164 67 2 9 chr11 91412879 91413303 -30430553 - BGLII LTR ERVK 0 421 1 7 1282 323 300 112 28 chr11 91413303 91413411 -30430445 + L1MDa LINE L1 2910 3030 -3507 7 1282 297 330 75 0 chr11 91413416 91413522 -30430334 + B4A SINE B4 1 114 -178 7 1282 272 289 61 76 chr11 91413543 91413691 -30430165 + B4 SINE B4 83 288 -4 7 1282 291 373 30 73 chr11 91414119 91414284 -30429572 + RSINE1 SINE B4 3 160 -5 7 1282 233 331 36 48 chr11 91414345 91414513 -30429343 + L1M5 LINE L1 2931 3096 -3050 7 1282 506 229 0 0 chr11 91414548 91414644 -30429212 + Lx9 LINE L1 7319 7414 -230 7 1282 21 57 0 0 chr11 91415975 91416010 -30427846 + AT_rich Low_complexity Low_complexity 1 35 0 7 1282 255 277 77 0 chr11 91417478 91417543 -30426313 - B4 SINE B4 -221 71 2 7 1282 564 89 20 10 chr11 91417639 91417741 -30426115 + (TC)n Simple_repeat Simple_repeat 2 104 0 7 1282 219 125 0 0 chr11 91417752 91417792 -30426064 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1282 351 281 108 29 chr11 91417922 91418061 -30425795 + MER102c DNA MER1_type 159 308 -23 7 1282 290 242 103 95 chr11 91418344 91418529 -30425327 - L1MC2 LINE L1 -66 6278 6104 7 1282 337 281 25 0 chr11 91418526 91418647 -30425209 + L1MC2 LINE L1 5900 6023 -310 7 1282 22 88 0 0 chr11 91419420 91419477 -30424379 + AT_rich Low_complexity Low_complexity 1 57 0 7 1282 297 0 0 0 chr11 91419734 91419767 -30424089 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1282 543 288 24 8 chr11 91420813 91420939 -30422917 - B1F2 SINE Alu -9 140 13 7 1282 395 329 28 35 chr11 91420939 91420958 -30422898 - ID_B1 SINE B4 -9 215 72 7 1282 316 271 0 27 chr11 91421037 91421147 -30422709 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 7 1282 252 244 31 14 chr11 91421322 91421408 -30422448 + MLT1D LTR MaLR 409 481 -24 7 1282 21 36 0 0 chr11 91421415 91421443 -30422413 + AT_rich Low_complexity Low_complexity 1 28 0 7 1282 22 35 0 0 chr11 91421999 91422028 -30421828 + AT_rich Low_complexity Low_complexity 1 29 0 7 1282 437 353 125 51 chr11 91422777 91423186 -30420670 - MT2A LTR ERVL -93 440 2 7 1282 507 15 206 0 chr11 91423289 91423420 -30420436 + (CATAT)n Simple_repeat Simple_repeat 3 160 0 7 1282 369 0 8 133 chr11 91423422 91423550 -30420306 + (CATATA)n Simple_repeat Simple_repeat 1 112 0 7 1282 355 268 78 32 chr11 91423550 91423720 -30420136 + Lx7 LINE L1 7527 7687 -9 7 1282 739 218 36 41 chr11 91423858 91424070 -30419786 - B3 SINE B2 0 216 10 7 1282 1807 339 97 72 chr11 91424118 91425429 -30418427 + MTE-int LTR MaLR 203 1546 -34 7 1282 594 0 0 0 chr11 91425813 91425879 -30417977 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 7 1282 326 327 28 18 chr11 91425902 91426011 -30417845 + B4 SINE B4 179 288 -4 7 1282 2513 133 42 0 chr11 91427240 91427647 -30416209 + Lx LINE L1 6217 6640 -14 7 1282 237 132 0 0 chr11 91428624 91428662 -30415194 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 7 1282 1093 239 75 22 chr11 91428744 91429022 -30414834 - RMER13A LTR ERVK -565 295 3 7 1282 515 29 0 14 chr11 91429167 91429237 -30414619 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1282 753 344 21 25 chr11 91429237 91429520 -30414336 + ORR1E LTR MaLR 23 304 -55 7 1282 201 176 0 73 chr11 91429524 91429579 -30414277 + CT-rich Low_complexity Low_complexity 3 53 0 7 1282 242 214 102 45 chr11 91430301 91430389 -30413467 - MLT1A1 LTR MaLR -12 396 304 7 1282 198 0 0 0 chr11 91431085 91431107 -30412749 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 7 1282 452 274 23 41 chr11 91431362 91431533 -30412323 - MamRep434 DNA TcMar -166 260 93 7 1282 766 108 0 33 chr11 91431683 91431865 -30411991 + (TTTTG)n Simple_repeat Simple_repeat 4 179 0 7 1282 418 216 93 36 chr11 91431873 91432012 -30411844 - B1F SINE Alu 0 149 3 7 1282 21 0 0 0 chr11 91432375 91432396 -30411460 + AT_rich Low_complexity Low_complexity 1 21 0 7 1282 3215 77 35 8 chr11 91432421 91432903 -30410953 - RLTR44C LTR ERVK -7 495 1 7 1282 489 34 0 0 chr11 91432907 91432966 -30410890 + (CATA)n Simple_repeat Simple_repeat 1 59 0 7 1282 532 277 15 0 chr11 91433047 91433177 -30410679 + B1_Mus1 SINE Alu 2 133 -15 7 1282 477 0 0 0 chr11 91433197 91433250 -30410606 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1282 423 261 0 9 chr11 91433446 91433558 -30410298 - Lx9 LINE L1 -172 7472 7362 7 1282 326 80 0 20 chr11 91433782 91433833 -30410023 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1282 459 0 0 0 chr11 91434651 91434702 -30409154 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1282 243 0 0 0 chr11 91434703 91434730 -30409126 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1282 270 268 48 12 chr11 91434777 91434860 -30408996 - B4A SINE B4 -26 266 181 7 1282 396 0 0 0 chr11 91435858 91435902 -30407954 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1282 461 289 43 31 chr11 91436188 91436349 -30407507 - MER20 DNA MER1_type 0 219 57 7 1282 1101 43 7 7 chr11 91436349 91436489 -30407367 - B1_Mus1 SINE Alu -7 141 2 7 1282 492 99 0 0 chr11 91439065 91439136 -30404720 + (CGTG)n Simple_repeat Simple_repeat 1 71 0 7 1282 884 68 19 55 chr11 91439156 91439574 -30404282 + (CAGAGA)n Simple_repeat Simple_repeat 1 402 0 7 1282 564 192 29 4 chr11 91440163 91440404 -30403452 + CT-rich Low_complexity Low_complexity 1 246 0 7 1282 417 66 0 0 chr11 91440414 91440475 -30403381 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1282 405 316 41 68 chr11 91441058 91441279 -30402577 - ID_B1 SINE B4 -7 217 3 7 1282 1801 201 63 13 chr11 91441509 91441906 -30401950 - MTC LTR MaLR 0 421 5 7 1282 28 0 0 0 chr11 91441914 91441942 -30401914 + AT_rich Low_complexity Low_complexity 1 28 0 7 1282 351 44 0 0 chr11 91442252 91442297 -30401559 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 7 1282 333 0 0 0 chr11 91442392 91442429 -30401427 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1282 694 289 136 17 chr11 91442433 91442669 -30401187 - B4A SINE B4 -23 269 6 7 1282 1114 284 54 23 chr11 91443535 91443888 -30399968 + MTE2b LTR MaLR 16 379 0 7 1282 272 277 24 24 chr11 91444768 91444853 -30399003 - MTD LTR MaLR -1 418 334 7 1282 442 0 35 0 chr11 91444904 91444962 -30398894 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 7 1282 1107 38 0 0 chr11 91444962 91445094 -30398762 - B1_Mm SINE Alu -13 134 3 7 1282 21 89 0 0 chr11 91445239 91445295 -30398561 + AT_rich Low_complexity Low_complexity 1 56 0 7 1282 181 330 48 29 chr11 91445462 91445565 -30398291 + MER5A DNA MER1_type 49 153 -36 7 1282 22 35 0 0 chr11 91445706 91445735 -30398121 + AT_rich Low_complexity Low_complexity 1 29 0 7 1282 524 292 31 4 chr11 91446540 91446767 -30397089 + Tigger2b DNA MER2_type 122 354 -372 7 1282 21 71 0 0 chr11 91447654 91447696 -30396160 + AT_rich Low_complexity Low_complexity 1 42 0 7 1282 588 186 11 6 chr11 91447706 91447884 -30395972 + (TA)n Simple_repeat Simple_repeat 1 179 0 7 1282 2662 259 82 32 chr11 91448028 91448773 -30395083 - Lx7 LINE L1 -617 7079 6298 7 1282 207 0 0 0 chr11 91448823 91448846 -30395010 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1282 3645 220 68 41 chr11 91448857 91449286 -30394570 - Lx7 LINE L1 -1646 6050 5602 7 1282 947 93 6 0 chr11 91449286 91449448 -30394408 + (TG)n Simple_repeat Simple_repeat 2 164 0 7 1282 3645 199 71 45 chr11 91449448 91450156 -30393700 - Lx7 LINE L1 -279 5601 4863 7 1282 207 0 0 0 chr11 91450164 91450187 -30393669 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1282 938 348 11 14 chr11 91450568 91450854 -30393002 + B4A SINE B4 6 290 -2 7 1282 200 167 21 0 chr11 91450866 91450914 -30392942 + (CATA)n Simple_repeat Simple_repeat 1 49 0 7 1282 21 57 0 0 chr11 91451131 91451166 -30392690 + AT_rich Low_complexity Low_complexity 1 35 0 7 1282 29 60 0 0 chr11 91451578 91451628 -30392228 + AT_rich Low_complexity Low_complexity 1 50 0 7 1282 194 323 29 48 chr11 91451777 91451881 -30391975 - MIRc SINE MIR -51 217 116 7 1282 214 100 60 0 chr11 91451973 91452023 -30391833 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 7 1282 206 128 26 0 chr11 91453014 91453053 -30390803 + GA-rich Low_complexity Low_complexity 1 40 0 7 1282 23 33 0 0 chr11 91453712 91453742 -30390114 + AT_rich Low_complexity Low_complexity 1 30 0 7 1282 197 24 0 87 chr11 91455044 91455090 -30388766 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 7 1282 14778 190 58 31 chr11 91455544 91457693 -30386163 + Lx5 LINE L1 882 3119 -2758 7 1282 522 0 0 0 chr11 91457693 91457751 -30386105 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1282 14778 184 30 31 chr11 91457751 91458345 -30385511 + Lx5 LINE L1 3120 3693 -2184 7 1282 495 0 0 0 chr11 91458345 91458400 -30385456 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1282 14778 184 30 31 chr11 91458400 91459240 -30384616 + Lx5 LINE L1 3694 4520 -1357 7 1282 4671 167 6 13 chr11 91459240 91460072 -30383784 + Lx2 LINE L1 5948 6773 -224 8 1282 794 164 158 4 chr11 91460088 91460280 -30383576 + Lx5 LINE L1 4527 4731 -1146 7 1282 3813 174 24 73 chr11 91460278 91461491 -30382365 + Lx5 LINE L1 4926 6054 -996 7 1282 848 62 62 0 chr11 91462083 91462245 -30381611 + (TCTCCC)n Simple_repeat Simple_repeat 5 176 0 8 1282 349 287 8 37 chr11 91462248 91462382 -30381474 + CT-rich Low_complexity Low_complexity 1 130 0 8 1282 358 333 53 58 chr11 91462567 91462927 -30380929 - L1MC5 LINE L1 -260 7701 7344 8 1282 228 273 0 0 chr11 91463702 91463768 -30380088 - L1MC5 LINE L1 -916 7045 6980 8 1282 1048 123 66 15 chr11 91464488 91464686 -30379170 + L1_Mus3 LINE L1 6431 6638 0 8 1282 237 162 29 14 chr11 91465372 91465441 -30378415 + (TA)n Simple_repeat Simple_repeat 2 71 0 8 1282 259 363 91 43 chr11 91465739 91465926 -30377930 - MLT1G1 LTR MaLR -11 568 373 8 1282 516 377 38 57 chr11 91466298 91466664 -30377192 - ORR1E LTR MaLR 0 359 1 8 1282 307 284 0 31 chr11 91467058 91467156 -30376700 - HAL1-3A_ME LINE L1 -789 2069 1975 8 1282 549 356 59 33 chr11 91467616 91467889 -30375967 - MER21B LTR ERV1 -486 377 98 8 1282 351 0 0 0 chr11 91468598 91468637 -30375219 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1282 267 327 230 0 chr11 91468647 91468760 -30375096 - RSINE1 SINE B4 -22 143 5 8 1282 7997 171 1 12 chr11 91468792 91470250 -30373606 - L1_Mur2 LINE L1 -671 5206 3764 8 1282 6133 159 17 11 chr11 91470245 91471669 -30372187 + Lx LINE L1 5207 6641 -13 8 1282 195 42 0 0 chr11 91471669 91471693 -30372163 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1282 1266 269 49 7 chr11 91471717 91472083 -30371773 + Lx9 LINE L1 7137 7514 -130 8 1282 204 40 0 0 chr11 91472083 91472108 -30371748 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1282 1266 269 49 7 chr11 91472108 91472150 -30371706 + Lx9 LINE L1 7515 7561 -83 8 1282 2685 34 15 0 chr11 91472157 91472485 -30371371 - L1Md_F2 LINE L1 -1 6581 6249 8 1282 594 314 34 0 chr11 91473430 91473605 -30370251 - B3 SINE B2 -6 210 30 8 1282 588 243 33 33 chr11 91474034 91474187 -30369669 - B3 SINE B2 -5 211 59 8 1282 6365 50 37 5 chr11 91474469 91475285 -30368571 - L1Md_F2 LINE L1 -12 6570 5729 8 1282 658 145 29 0 chr11 91475285 91475400 -30368456 - L1Md_F LINE L1 -6353 266 171 8 1282 2463 56 9 15 chr11 91475416 91475741 -30368115 + L1Md_T LINE L1 6257 6579 -3 8 1282 26 0 0 0 chr11 91476440 91476466 -30367390 + AT_rich Low_complexity Low_complexity 1 26 0 8 1282 22 0 0 0 chr11 91476650 91476672 -30367184 + AT_rich Low_complexity Low_complexity 1 22 0 8 1282 5404 233 52 55 chr11 91476761 91477515 -30366341 - Lx5 LINE L1 0 7050 6314 8 1282 1417 151 0 27 chr11 91477515 91477774 -30366082 + Lx3B LINE L1 6718 6969 -4 8 1282 5404 233 52 55 chr11 91477774 91478445 -30365411 - Lx5 LINE L1 -737 6313 5630 8 1282 2721 203 9 2 chr11 91478467 91479001 -30364855 - L1_Mur2 LINE L1 -1 5876 5339 8 1282 33 25 0 0 chr11 91481348 91481388 -30362468 + AT_rich Low_complexity Low_complexity 1 40 0 8 1282 516 328 41 45 chr11 91481597 91481843 -30362013 + RMER15 LTR ERVL 288 532 -43 8 1282 320 277 24 12 chr11 91482221 91482305 -30361551 + RMER15 LTR ERVL 479 563 -12 8 1282 42 48 0 0 chr11 91482973 91483036 -30360820 + AT_rich Low_complexity Low_complexity 1 63 0 8 1282 558 0 0 0 chr11 91483204 91483266 -30360590 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1282 3221 199 24 7 chr11 91483293 91483973 -30359883 + Lx3C LINE L1 6284 6974 -2 8 1282 238 224 0 0 chr11 91483979 91484028 -30359828 + A-rich Low_complexity Low_complexity 1 49 0 8 1282 252 167 0 0 chr11 91484035 91484083 -30359773 + GA-rich Low_complexity Low_complexity 1 48 0 8 1282 675 314 49 12 chr11 91484917 91485326 -30358530 + L1_Mur3 LINE L1 3873 4296 -1847 8 1282 279 267 64 31 chr11 91485527 91485746 -30358110 + L1_Mur3 LINE L1 4437 4664 -1476 8 1282 921 212 14 45 chr11 91485751 91485973 -30357883 - RMER19C LTR ERVK 0 611 397 8 1282 1225 22 0 0 chr11 91485976 91486115 -30357741 - L1Md_F3 LINE L1 -859 5725 5587 8 1282 6893 38 4 5 chr11 91486115 91486959 -30356897 + L1Md_F3 LINE L1 5728 6570 -14 8 1282 1386 214 50 40 chr11 91486967 91487289 -30356567 - RMER19B LTR ERVK -270 632 308 8 160 1175 330 62 58 chr11 91487310 91488425 -30355431 + L1_Mur3 LINE L1 4641 5744 -136 8 1283 258 32 0 0 chr11 91488425 91488456 -30355400 + (TA)n Simple_repeat Simple_repeat 2 32 0 8 1283 1175 330 62 58 chr11 91488456 91488573 -30355283 + L1_Mur3 LINE L1 5745 5877 -3 8 1283 607 188 17 11 chr11 91488610 91488788 -30355068 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1283 30 0 0 0 chr11 91489169 91489199 -30354657 + AT_rich Low_complexity Low_complexity 1 30 0 8 1283 8382 123 48 22 chr11 91489240 91490655 -30353201 - Lx3B LINE L1 -3 6970 5541 8 1283 468 0 0 0 chr11 91490655 91490707 -30353149 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1283 2877 121 68 0 chr11 91490707 91490838 -30353018 - Lx3B LINE L1 -346 5540 5403 8 1283 475 313 39 16 chr11 91490888 91491055 -30352801 + Zaphod DNA Tip100 469 639 -3392 8 1283 725 316 48 51 chr11 91491055 91491429 -30352427 + MER82 DNA MER2_type 1 373 -280 8 1283 447 19 0 0 chr11 91491441 91491493 -30352363 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1283 276 286 35 35 chr11 91491953 91492040 -30351816 + B4A SINE B4 194 280 -12 8 1283 598 282 25 0 chr11 91492297 91492460 -30351396 + Lx6 LINE L1 6555 6721 -739 8 1283 249 62 0 0 chr11 91492460 91492492 -30351364 + (AGGGGG)n Simple_repeat Simple_repeat 5 36 0 8 1283 901 135 12 0 chr11 91492492 91492655 -30351201 + (GA)n Simple_repeat Simple_repeat 1 165 0 8 1283 1345 301 54 12 chr11 91492656 91493254 -30350602 + Lx6 LINE L1 6455 7434 -26 8 1283 3287 49 2 0 chr11 91493838 91494268 -30349588 - L1Md_F3 LINE L1 0 6584 6174 8 1283 1364 51 0 6 chr11 91494270 91494447 -30349409 + L1Md_F3 LINE L1 5903 6078 -506 8 1283 235 287 30 60 chr11 91494551 91494651 -30349205 + BC1_Mm scRNA scRNA 17 113 -39 8 1283 4224 130 29 19 chr11 91496001 91496692 -30347164 - Lx3C LINE L1 -7 6969 6272 8 1283 389 283 170 8 chr11 91496692 91496927 -30346929 - L1_Mur3 LINE L1 -3085 2795 2523 8 1283 972 341 73 30 chr11 91497133 91497629 -30346227 - Lx8 LINE L1 -571 6902 6386 8 1283 711 298 11 0 chr11 91497654 91497845 -30346011 + MTC LTR MaLR 3 195 -226 8 1283 341 330 197 11 chr11 91497894 91498072 -30345784 + B3 SINE B2 2 212 -4 8 1283 9010 3 0 0 chr11 91498225 91499875 -30343981 - L1Md_A LINE L1 0 6582 4933 8 1283 225 183 46 77 chr11 91499875 91499940 -30343916 + RMER20A LTR ERVK 186 248 -268 8 1283 542 0 0 0 chr11 91499940 91500000 -30343856 - L1_Mm LINE L1 -1016 4867 4808 8 1283 31486 9 1 1 chr11 91500000 91505198 -30338658 - L1Md_A LINE L1 -1076 4807 1 1 1283 459 288 112 53 chr11 91505697 91505710 -30338146 - B3A SINE B2 -16 182 172 2 1283 368 20 20 0 chr11 91505710 91505759 -30338097 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1283 387 0 0 0 chr11 91505759 91505801 -30338055 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1283 459 288 112 53 chr11 91505801 91505955 -30337901 - B3A SINE B2 -27 171 5 2 1283 1523 128 81 19 chr11 91506601 91506872 -30336984 - Lx2B LINE L1 -4 6996 6709 5 1283 682 149 0 32 chr11 91506872 91506997 -30336859 + Lx2B LINE L1 6549 6669 -331 5 1283 190 0 32 32 chr11 91508588 91508619 -30335237 + (TTA)n Simple_repeat Simple_repeat 1 31 0 6 1283 398 87 43 0 chr11 91508619 91508688 -30335168 - L1_Mus2 LINE L1 -10 6556 6485 7 1283 582 279 43 61 chr11 91508923 91509087 -30334769 + RSINE1 SINE B4 5 165 0 8 1283 303 228 0 0 chr11 91509093 91509185 -30334671 + (CA)n Simple_repeat Simple_repeat 1 92 0 9 1283 391 332 97 53 chr11 91510106 91510313 -30333543 + LTR16A1 LTR ERVL 240 455 -1 1 1283 1645 201 28 8 chr11 91510833 91511190 -30332666 + Lx4B LINE L1 5996 6359 -699 1 1283 24 0 0 0 chr11 91511386 91511410 -30332446 + AT_rich Low_complexity Low_complexity 1 24 0 1 1283 21 36 0 0 chr11 91512217 91512245 -30331611 + AT_rich Low_complexity Low_complexity 1 28 0 1 1283 233 89 22 0 chr11 91512396 91512441 -30331415 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1283 302 228 12 113 chr11 91512828 91512934 -30330922 + PB1D10 SINE Alu 19 118 -2 1 1283 1207 291 67 40 chr11 91513247 91513798 -30330058 - Lx9 LINE L1 -180 7464 6899 1 1283 22 35 0 0 chr11 91514299 91514328 -30329528 + AT_rich Low_complexity Low_complexity 1 29 0 1 1283 458 303 29 57 chr11 91514481 91514621 -30329235 - B4 SINE B4 0 292 157 1 1283 199 281 15 15 chr11 91515149 91515214 -30328642 + L4 LINE RTE 1303 1367 -662 1 1283 290 327 12 15 chr11 91517032 91517142 -30326714 + PB1D10 SINE Alu 10 121 -28 2 1283 1969 182 68 10 chr11 91517350 91517744 -30326112 - MTC LTR MaLR 0 421 5 2 1283 784 320 22 8 chr11 91519349 91519617 -30324239 + B4 SINE B4 3 274 -18 2 1283 235 336 19 0 chr11 91519627 91519734 -30324122 + (CATG)n Simple_repeat Simple_repeat 2 110 0 2 1283 326 285 150 13 chr11 91520011 91520164 -30323692 - L2a LINE L2 -9 3417 3244 2 1283 1794 93 12 4 chr11 91520194 91520453 -30323403 - L1_Mus3 LINE L1 -12 6626 6366 2 1283 715 350 54 27 chr11 91520636 91521009 -30322847 + MLT1B LTR MaLR 7 389 -1 2 1283 421 342 87 43 chr11 91521026 91521371 -30322485 - L2a LINE L2 -467 2952 2593 2 1283 353 131 0 47 chr11 91521645 91521709 -30322147 + HAL1-3A_ME LINE L1 1976 2036 -822 2 1283 258 32 0 0 chr11 91521972 91522003 -30321853 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1283 714 243 36 46 chr11 91522669 91522863 -30320993 - B3A SINE B2 -6 192 1 2 1283 553 248 127 24 chr11 91524103 91524117 -30319739 - B3A SINE B2 -16 182 170 3 1283 513 0 0 0 chr11 91524117 91524174 -30319682 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1283 553 248 127 24 chr11 91524174 91524324 -30319532 - B3A SINE B2 -29 169 1 3 1283 1345 91 0 59 chr11 91524631 91524852 -30319004 + L1_Mus2 LINE L1 6359 6566 0 3 1283 760 245 6 16 chr11 91525080 91525302 -30318554 + B3A SINE B2 2 216 0 3 1283 1871 228 152 61 chr11 91525948 91526601 -30317255 + RMER6D LTR ERVK 1 712 -8 3 1283 2168 332 61 24 chr11 91527488 91528576 -30315280 + Lx8 LINE L1 6069 7196 -277 3 1283 285 98 0 0 chr11 91529091 91529132 -30314724 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1283 3275 36 0 0 chr11 91529146 91529538 -30314318 - L1Md_T LINE L1 0 6582 6191 3 1283 372 103 0 0 chr11 91530599 91530657 -30313199 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1283 408 276 9 45 chr11 91530661 91530771 -30313085 - RSINE1 SINE B4 -45 120 15 3 1283 282 272 0 12 chr11 91530813 91530895 -30312961 - L1M2 LINE L1 -3529 2614 2534 4 1283 306 50 0 0 chr11 91530990 91531030 -30312826 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1283 543 134 0 0 chr11 91531030 91531149 -30312707 + (GA)n Simple_repeat Simple_repeat 2 120 0 4 1283 528 16 0 0 chr11 91532170 91532231 -30311625 + (CCA)n Simple_repeat Simple_repeat 2 62 0 4 1283 21 0 0 0 chr11 91532824 91532845 -30311011 + AT_rich Low_complexity Low_complexity 1 21 0 4 1283 809 284 27 87 chr11 91533748 91534072 -30309784 - MTE2a LTR MaLR -9 370 68 4 1283 264 22 0 62 chr11 91534072 91534120 -30309736 + (TTAGGG)n Simple_repeat Simple_repeat 1 45 0 4 1283 5908 212 46 23 chr11 91534294 91535249 -30308607 - Lx2B LINE L1 0 7050 6051 4 1283 729 96 0 0 chr11 91535249 91535374 -30308482 + (TCTCCC)n Simple_repeat Simple_repeat 5 129 0 4 1283 5908 187 31 21 chr11 91535374 91536527 -30307329 - Lx2B LINE L1 -950 6050 4883 4 1283 2211 227 130 8 chr11 91536531 91536601 -30307255 - MusHAL1 LINE L1 -1781 931 850 4 1283 555 16 0 0 chr11 91536601 91536665 -30307191 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1283 2211 227 130 8 chr11 91536665 91537318 -30306538 - MusHAL1 LINE L1 -1863 849 121 4 1283 336 165 77 0 chr11 91537330 91537421 -30306435 - Lx2B LINE L1 -5815 1271 1174 4 1283 3948 224 90 41 chr11 91537444 91538521 -30305335 - Lx5 LINE L1 -2 7048 5919 5 1283 818 248 33 16 chr11 91538712 91538989 -30304867 - Lx2B LINE L1 -5450 1188 916 4 1283 201 74 0 0 chr11 91538998 91539025 -30304831 + (TAG)n Simple_repeat Simple_repeat 1 27 0 5 1283 21 36 0 0 chr11 91539398 91539426 -30304430 + AT_rich Low_complexity Low_complexity 1 28 0 5 1283 314 330 79 28 chr11 91539469 91539647 -30304209 - L1MD3 LINE L1 -17 7978 7792 5 1283 555 56 0 0 chr11 91539872 91539943 -30303913 + (CAAAA)n Simple_repeat Simple_repeat 3 73 0 5 1283 24 53 0 0 chr11 91540622 91540660 -30303196 + AT_rich Low_complexity Low_complexity 1 38 0 5 1283 298 323 55 24 chr11 91542308 91542435 -30301421 + B4A SINE B4 1 131 -161 5 1283 2188 84 15 9 chr11 91542487 91542811 -30301045 - L1_Mus2 LINE L1 0 6566 6241 5 1283 288 111 0 0 chr11 91542874 91542928 -30300928 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 5 1283 215 157 0 19 chr11 91542936 91542988 -30300868 + CT-rich Low_complexity Low_complexity 2 52 0 6 1283 1072 119 6 6 chr11 91542988 91543166 -30300690 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 6 1283 347 284 92 0 chr11 91543170 91543279 -30300577 - ID_B1 SINE B4 -1 223 105 6 1283 2289 58 34 0 chr11 91544245 91544538 -30299318 - L1_Mus1 LINE L1 0 6567 6265 6 1283 405 0 0 0 chr11 91544576 91544621 -30299235 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1283 567 209 199 0 chr11 91544921 91545122 -30298734 - Lx9 LINE L1 -1 7643 7403 6 1283 5029 119 43 1 chr11 91545143 91545895 -30297961 - Lx LINE L1 0 6654 5872 6 1283 990 244 0 5 chr11 91545925 91546139 -30297717 + B3 SINE B2 4 216 0 6 1283 587 232 130 13 chr11 91546192 91546423 -30297433 + L1MA6 LINE L1 5662 5919 -381 6 1283 183 42 0 0 chr11 91547162 91547186 -30296670 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1283 1058 306 74 20 chr11 91547204 91547705 -30296151 - Lx8 LINE L1 -28 7445 6918 7 1283 1055 134 0 6 chr11 91550198 91550378 -30293478 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 7 1283 264 167 0 0 chr11 91550387 91550435 -30293421 + CT-rich Low_complexity Low_complexity 2 49 0 7 1283 262 272 12 0 chr11 91551450 91551531 -30292325 + GA-rich Low_complexity Low_complexity 2 83 0 7 1283 360 323 12 6 chr11 91553070 91553237 -30290619 - B3 SINE B2 -28 167 1 7 1283 250 259 60 36 chr11 91553263 91553347 -30290509 - B4 SINE B4 -206 86 1 7 1283 436 174 276 0 chr11 91553583 91553681 -30290175 + B2_Mm2 SINE B2 5 129 -66 7 1283 336 24 0 0 chr11 91553706 91553747 -30290109 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1283 28 48 0 0 chr11 91553796 91553838 -30290018 + AT_rich Low_complexity Low_complexity 1 42 0 7 1283 1053 116 0 0 chr11 91555963 91556110 -30287746 - B1_Mus2 SINE Alu 0 147 1 7 1283 648 348 70 18 chr11 91556293 91556577 -30287279 - MLT1A0 LTR MaLR -61 304 6 8 1283 592 284 58 126 chr11 91556598 91556908 -30286948 + MLT1F2 LTR MaLR 61 349 -211 8 1283 736 278 111 40 chr11 91556923 91557275 -30286581 + MTE2b LTR MaLR 1 377 -2 8 1283 494 272 23 31 chr11 91557285 91557414 -30286442 + B1F1 SINE Alu 11 138 -11 8 1283 277 371 27 27 chr11 91557437 91557584 -30286272 + MLT1F2 LTR MaLR 350 496 -64 8 1283 1767 258 21 28 chr11 91557584 91558011 -30285845 - Lx6 LINE L1 -28 7432 7009 8 1283 1069 97 7 0 chr11 91558356 91558500 -30285356 - B1_Mus2 SINE Alu -2 145 1 8 1283 769 296 37 22 chr11 91560222 91560492 -30283364 + B4A SINE B4 1 274 -18 8 1283 223 236 220 22 chr11 91561098 91561189 -30282667 - MIR SINE MIR -24 238 130 8 1283 1897 102 28 28 chr11 91561685 91562007 -30281849 - RLTRETN_Mm LTR ERVK 0 322 1 8 1283 1001 234 23 0 chr11 91562179 91562397 -30281459 - Lx5 LINE L1 -381 6669 6447 8 1283 261 285 77 82 chr11 91562744 91562977 -30280879 + L1M3 LINE L1 4561 4792 -1348 9 1283 2362 206 37 49 chr11 91562977 91563548 -30280308 + RLTR20B3 LTR ERVK 1 564 -13 9 1283 824 334 78 27 chr11 91565369 91565880 -30277976 - Lx8 LINE L1 -213 7260 6724 9 1283 4493 75 0 18 chr11 91566017 91566625 -30277231 - L1Md_F2 LINE L1 -12 6570 5974 9 1283 3297 52 2 0 chr11 91566626 91567047 -30276809 + L1_Mm LINE L1 2123 2544 -3339 9 1283 22 0 0 0 chr11 91567416 91567438 -30276418 + AT_rich Low_complexity Low_complexity 1 22 0 9 1283 405 81 0 0 chr11 91567489 91567551 -30276305 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1283 1464 49 21 21 chr11 91567575 91567764 -30276092 - B2_Mm1t SINE B2 -3 190 2 9 1283 566 266 71 52 chr11 91568201 91568411 -30275445 + B4 SINE B4 6 219 -73 9 1283 813 261 193 39 chr11 91568914 91569376 -30274480 + MT2A LTR ERVL 1 533 0 9 1283 632 300 0 58 chr11 91569643 91569834 -30274022 + B3A SINE B2 18 197 -1 1 1283 276 265 180 42 chr11 91570586 91570775 -30273081 - L1M5 LINE L1 -887 5557 5343 1 1283 381 283 210 11 chr11 91571376 91571562 -30272294 - Lx8 LINE L1 -356 7117 6895 1 1283 6830 132 25 23 chr11 91571979 91573478 -30270378 - Lx LINE L1 -6 6648 5151 1 1283 9835 163 24 6 chr11 91573487 91573666 -30270190 + L1_Mur2 LINE L1 3282 3482 -2395 1 1283 240 59 0 0 chr11 91573666 91573700 -30270156 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1283 9835 163 24 6 chr11 91573700 91575362 -30268494 + L1_Mur2 LINE L1 3483 5157 -720 1 1283 910 278 149 15 chr11 91575358 91575760 -30268096 + Lx2B LINE L1 6516 6971 -29 1 1283 417 54 0 0 chr11 91575760 91575816 -30268040 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1283 345 71 14 28 chr11 91576088 91576160 -30267696 + (TTTTTG)n Simple_repeat Simple_repeat 1 71 0 1 1283 6038 190 22 48 chr11 91576301 91576904 -30266952 + Lx6 LINE L1 3726 4286 -1594 1 1283 231 36 0 0 chr11 91576904 91576932 -30266924 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1283 6038 190 22 48 chr11 91576932 91577774 -30266082 + Lx6 LINE L1 4287 5133 -747 1 1283 8811 108 41 14 chr11 91577775 91577787 -30266069 - Lx3_Mus LINE L1 -12 6997 6989 1 1283 216 0 0 0 chr11 91577787 91577811 -30266045 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1283 8811 108 41 14 chr11 91577811 91578850 -30265006 - Lx3_Mus LINE L1 -21 6988 5909 1 1283 234 0 0 0 chr11 91578850 91578876 -30264980 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1283 8811 83 9 12 chr11 91578876 91579558 -30264298 - Lx3_Mus LINE L1 -1101 5908 5229 1 1283 3025 89 12 0 chr11 91579558 91579974 -30263882 - BGLII LTR ERVK 0 421 1 1 1283 5630 82 8 11 chr11 91579974 91580102 -30263754 - Lx3_Mus LINE L1 -658 5228 5104 1 1283 2583 247 42 47 chr11 91580101 91581037 -30262819 + Lx6 LINE L1 5130 6054 -1406 1 1283 3230 265 63 30 chr11 91581029 91581942 -30261914 + Lx6 LINE L1 6505 7448 -12 1 1283 531 0 0 0 chr11 91581942 91582001 -30261855 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1 1283 237 300 13 67 chr11 91582260 91582335 -30261521 - B1F SINE Alu -74 75 5 1 1283 347 297 45 0 chr11 91583357 91583468 -30260388 + PB1D10 SINE Alu 2 117 0 1 1283 319 200 0 23 chr11 91583736 91583823 -30260033 + Lx4B LINE L1 6957 7041 -17 1 1283 440 18 18 0 chr11 91583953 91584010 -30259846 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1283 2792 152 12 54 chr11 91584208 91584785 -30259071 - Lx4B LINE L1 -5 7053 6501 1 1283 282 206 0 0 chr11 91585522 91585595 -30258261 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1283 348 24 0 0 chr11 91585668 91585709 -30258147 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1283 2330 213 58 35 chr11 91585710 91586245 -30257611 + RLTR20B3 LTR ERVK 5 551 -26 1 1283 363 44 0 0 chr11 91586261 91586306 -30257550 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1283 34 0 0 0 chr11 91586322 91586356 -30257500 + AT_rich Low_complexity Low_complexity 1 34 0 1 1283 447 336 9 63 chr11 91586407 91586629 -30257227 + ID_B1 SINE B4 2 211 -13 1 1283 279 0 0 0 chr11 91586630 91586661 -30257195 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1283 31 44 0 0 chr11 91586738 91586783 -30257073 + AT_rich Low_complexity Low_complexity 1 45 0 1 1283 189 147 0 0 chr11 91586847 91586881 -30256975 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1 1283 392 284 98 14 chr11 91586883 91587026 -30256830 - HAL1-3A_ME LINE L1 -420 2438 2284 1 1283 376 200 16 10 chr11 91587030 91587228 -30256628 + CT-rich Low_complexity Low_complexity 1 199 0 1 1283 2182 148 16 6 chr11 91587514 91587880 -30255976 + Lx3A LINE L1 6603 6972 -9 1 1283 209 83 0 27 chr11 91587891 91587928 -30255928 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1283 261 0 0 0 chr11 91588268 91588297 -30255559 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1283 396 0 0 0 chr11 91588297 91588340 -30255516 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1283 261 0 0 0 chr11 91588340 91588368 -30255488 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1283 891 290 51 51 chr11 91589625 91590054 -30253802 + L1MA8 LINE L1 5358 5786 -505 1 1283 369 358 122 0 chr11 91590056 91590179 -30253677 + RSINE1 SINE B4 3 140 -25 1 1283 477 34 0 0 chr11 91590179 91590238 -30253618 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1283 348 24 0 0 chr11 91590238 91590278 -30253578 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1283 22 0 0 0 chr11 91590293 91590315 -30253541 + AT_rich Low_complexity Low_complexity 1 22 0 1 1283 1059 38 0 0 chr11 91590371 91590503 -30253353 + (GA)n Simple_repeat Simple_repeat 2 133 0 1 1283 406 329 62 14 chr11 91590530 91590820 -30253036 + L1MA8 LINE L1 5787 6090 -201 1 1283 2241 168 35 12 chr11 91590883 91591306 -30252550 - Lx2 LINE L1 -6 6991 6559 1 1283 851 154 108 4 chr11 91591310 91591559 -30252297 + Lx2 LINE L1 5919 6217 -780 1 1283 824 267 50 27 chr11 91591611 91591873 -30251983 + ORR1D1 LTR MaLR 107 374 0 1 1283 26 0 0 0 chr11 91592014 91592040 -30251816 + AT_rich Low_complexity Low_complexity 1 26 0 1 1283 42 48 0 0 chr11 91593102 91593165 -30250691 + AT_rich Low_complexity Low_complexity 1 63 0 1 1283 619 142 8 8 chr11 91593425 91593546 -30250310 + CT-rich Low_complexity Low_complexity 2 122 0 1 1283 653 289 67 78 chr11 91593645 91593811 -30250045 - B4A SINE B4 -23 269 103 1 1283 2322 113 3 0 chr11 91593811 91594137 -30249719 + ORR1A2 LTR MaLR 1 327 0 1 1283 653 289 67 78 chr11 91594137 91594240 -30249616 - B4A SINE B4 -190 102 3 1 1283 497 134 0 9 chr11 91594269 91594382 -30249474 + (TC)n Simple_repeat Simple_repeat 2 113 0 1 1283 285 75 0 0 chr11 91594383 91594423 -30249433 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1283 372 135 0 0 chr11 91594425 91594499 -30249357 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1283 240 217 108 0 chr11 91596546 91596629 -30247227 - Lx9 LINE L1 -2 7642 7551 1 1283 390 21 0 0 chr11 91596637 91596684 -30247172 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1283 383 0 21 0 chr11 91597143 91597190 -30246666 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1283 324 0 0 0 chr11 91597190 91597225 -30246631 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1283 240 143 0 0 chr11 91597657 91597699 -30246157 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 1283 427 286 102 34 chr11 91597794 91598029 -30245827 + L1M4 LINE L1 683 933 -5609 1 1283 198 0 0 0 chr11 91598084 91598106 -30245750 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 1 1283 869 325 65 55 chr11 91598408 91599023 -30244833 + Lx9 LINE L1 6821 7441 -203 1 1283 449 254 16 24 chr11 91599277 91599402 -30244454 + L1VL4 LINE L1 197 320 -5982 1 1283 858 119 159 0 chr11 91599408 91599559 -30244297 + L1VL4 LINE L1 622 796 -5506 1 1283 783 130 0 0 chr11 91599558 91599689 -30244167 - MusHAL1 LINE L1 -2313 399 269 1 1283 5667 6 0 2 chr11 91599697 91600332 -30243524 - L1Md_T LINE L1 0 6582 5949 1 1283 6191 10 0 0 chr11 91600332 91601130 -30242726 + L1Md_T LINE L1 5167 5964 -618 1 1283 503 114 11 0 chr11 91601128 91601216 -30242640 - MusHAL1 LINE L1 -2430 282 194 1 1283 20093 173 16 13 chr11 91601218 91601856 -30242000 + L1_Mus4 LINE L1 1977 2610 -3273 1 1283 5086 65 3 0 chr11 91601856 91602505 -30241351 + L1_Mus1 LINE L1 5916 6566 -1 1 1283 20093 153 14 12 chr11 91602505 91606509 -30237347 + L1_Mus4 LINE L1 2611 6629 -7 1 1283 402 297 95 14 chr11 91606651 91606953 -30236903 + L1M4c LINE L1 1976 2296 -4712 1 1283 31 58 0 0 chr11 91607107 91607159 -30236697 + AT_rich Low_complexity Low_complexity 1 52 0 1 1283 470 306 75 42 chr11 91607237 91607449 -30236407 + B4A SINE B4 2 220 -72 1 1283 590 250 0 30 chr11 91607617 91607749 -30236107 + B1_Mur1 SINE Alu 9 136 -13 1 1283 270 0 0 0 chr11 91607749 91607779 -30236077 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1283 530 195 111 24 chr11 91607799 91607925 -30235931 + B1_Mur4 SINE Alu 2 138 -12 1 1283 383 299 61 25 chr11 91607944 91608245 -30235611 + L1MA5 LINE L1 5711 6017 -286 1 1283 448 344 41 44 chr11 91608916 91609254 -30234602 - Tigger10 DNA Tigger -505 1338 1002 1 1283 546 335 52 0 chr11 91609415 91609588 -30234268 + ID_B1 SINE B4 28 209 -15 1 1283 620 375 34 19 chr11 91610039 91610305 -30233551 - B4A SINE B4 -22 270 1 1 1283 23 54 0 0 chr11 91610713 91610750 -30233106 + AT_rich Low_complexity Low_complexity 1 37 0 1 1283 634 277 79 0 chr11 91610773 91610950 -30232906 - B3 SINE B2 -25 191 1 1 1283 546 250 24 16 chr11 91611934 91612060 -30231796 + RSINE1 SINE B4 3 129 -36 1 1283 494 95 0 35 chr11 91612073 91612160 -30231696 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1283 608 208 131 68 chr11 91613495 91613639 -30230217 - ORR1D1 LTR MaLR -53 321 165 1 1283 666 37 0 0 chr11 91613639 91613720 -30230136 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1283 608 208 131 68 chr11 91613720 91613781 -30230075 - ORR1D1 LTR MaLR -210 164 103 1 1283 1210 350 71 14 chr11 91614630 91615291 -30228565 + Lx8 LINE L1 6606 7304 -169 1 1283 21 0 0 0 chr11 91615292 91615313 -30228543 + AT_rich Low_complexity Low_complexity 1 21 0 1 1283 3431 116 14 2 chr11 91615422 91615922 -30227934 + Lx3B LINE L1 6294 6799 -174 1 1283 2874 196 81 35 chr11 91615922 91616695 -30227161 + RLTR13D3 LTR ERVK 1 1114 0 1 1283 777 199 17 17 chr11 91616695 91616874 -30226982 + Lx3B LINE L1 6794 6972 -1 1 1283 38 22 0 0 chr11 91616880 91616925 -30226931 + AT_rich Low_complexity Low_complexity 1 45 0 1 1283 2838 132 97 10 chr11 91617014 91617520 -30226336 - Lx2A1 LINE L1 -11 6997 6448 1 160 543 201 0 0 chr11 91619189 91619338 -30224518 + (TA)n Simple_repeat Simple_repeat 2 150 0 1 1284 337 290 0 0 chr11 91620338 91620469 -30223387 + CT-rich Low_complexity Low_complexity 2 132 0 1 1284 1245 209 88 0 chr11 91620490 91620821 -30223035 - L1_Mur3 LINE L1 -1656 4224 3865 1 1284 397 339 116 51 chr11 91620863 91621199 -30222657 + L1M2 LINE L1 4882 5239 -904 1 1284 501 62 0 0 chr11 91621219 91621284 -30222572 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1284 189 0 0 0 chr11 91621284 91621304 -30222552 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1284 667 281 95 26 chr11 91621379 91621799 -30222057 + L1M2 LINE L1 5346 5794 -506 1 1284 198 219 0 0 chr11 91621842 91621906 -30221950 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1284 365 39 20 0 chr11 91622780 91622831 -30221025 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1284 303 85 0 0 chr11 91623536 91623583 -30220273 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1284 192 77 0 0 chr11 91624071 91624097 -30219759 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1284 259 191 372 26 chr11 91624115 91624228 -30219628 + Lx3_Mus LINE L1 6837 6988 -21 2 1284 218 81 27 0 chr11 91624228 91624265 -30219591 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2 1284 1022 78 0 44 chr11 91624721 91624809 -30219047 - L1_Mus2 LINE L1 -1 6565 6482 2 1284 4032 57 18 2 chr11 91624809 91625320 -30218536 + MURVY-LTR LTR ERV1 1 519 0 2 1284 1022 78 0 44 chr11 91625320 91625391 -30218465 - L1_Mus2 LINE L1 -85 6481 6413 2 1284 603 254 13 27 chr11 91625524 91625674 -30218182 - B1_Mur1 SINE Alu -1 148 1 2 1284 26 30 0 0 chr11 91625685 91625718 -30218138 + AT_rich Low_complexity Low_complexity 1 33 0 2 1284 1684 222 14 22 chr11 91625837 91626252 -30217604 - Lx4B LINE L1 -5 7053 6642 2 1284 23 0 0 0 chr11 91626260 91626283 -30217573 + AT_rich Low_complexity Low_complexity 1 23 0 2 1284 294 224 0 0 chr11 91627262 91627347 -30216509 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1284 5716 158 27 11 chr11 91628069 91629387 -30214469 - Lx2A1 LINE L1 -914 6094 4754 2 1284 3972 167 15 4 chr11 91629390 91630075 -30213781 + Lx2A1 LINE L1 6309 7000 -8 2 1284 204 111 73 18 chr11 91630637 91630692 -30213164 + (TTATA)n Simple_repeat Simple_repeat 3 60 0 2 1284 1932 244 32 64 chr11 91632245 91632840 -30211016 - Lx9 LINE L1 -127 7517 6942 2 1284 1879 258 61 17 chr11 91632845 91633848 -30210008 + Lx9 LINE L1 5554 6766 -878 2 1284 274 346 7 57 chr11 91635018 91635159 -30208697 - ID_B1 SINE B4 -5 219 86 2 1284 469 266 117 33 chr11 91635889 91636103 -30207753 + ORR1D2 LTR MaLR 4 235 -135 2 1284 25 0 0 0 chr11 91636582 91636607 -30207249 + AT_rich Low_complexity Low_complexity 1 25 0 2 1284 279 0 0 0 chr11 91637625 91637656 -30206200 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1284 423 0 0 0 chr11 91637656 91637702 -30206154 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1284 202 146 49 0 chr11 91637739 91637780 -30206076 + (CACAC)n Simple_repeat Simple_repeat 2 44 0 2 1284 649 294 6 0 chr11 91637939 91638102 -30205754 + ID_B1 SINE B4 8 171 -53 2 1284 241 264 21 65 chr11 91638034 91638127 -30205729 - YREP_Mm Unknown Unknown -1518 294 206 2 1284 286 299 103 60 chr11 91638128 91638313 -30205543 + L1MB3 LINE L1 5931 6123 -60 2 1284 3061 37 0 0 chr11 91638964 91639318 -30204538 + IAPEY2_LTR LTR ERVK 1 354 -3 2 1284 1525 297 38 21 chr11 91639323 91640055 -30203801 - Lx6 LINE L1 -70 7390 6450 2 1284 228 182 0 0 chr11 91640586 91640630 -30203226 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 2 1284 1967 206 22 17 chr11 91641401 91641806 -30202050 - MTB_Mm LTR MaLR 0 407 1 2 1284 429 342 0 0 chr11 91641827 91641944 -30201912 - B3A SINE B2 -79 119 3 2 1284 21 57 0 0 chr11 91641948 91641983 -30201873 + AT_rich Low_complexity Low_complexity 1 35 0 2 1284 504 32 0 0 chr11 91642378 91642440 -30201416 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1284 477 343 34 27 chr11 91642646 91642793 -30201063 + B3A SINE B2 4 151 -47 2 1284 474 18 0 0 chr11 91642795 91642850 -30201006 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1284 269 18 0 153 chr11 91642939 91643070 -30200786 + (TTAGG)n Simple_repeat Simple_repeat 4 114 0 2 1284 500 264 21 169 chr11 91643071 91643443 -30200413 - RLTR25A LTR ERVK -5 1098 827 2 1284 1275 119 22 26 chr11 91643642 91643874 -30199982 + L1_Mus3 LINE L1 6397 6627 -11 2 1284 180 0 0 0 chr11 91643874 91643894 -30199962 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1284 2102 94 16 9 chr11 91643894 91644217 -30199639 + L1_Mur1 LINE L1 3819 4143 -1743 2 1284 666 58 0 0 chr11 91644344 91644431 -30199425 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1284 960 77 0 0 chr11 91645098 91645228 -30198628 + (TTC)n Simple_repeat Simple_repeat 3 132 0 2 1284 627 277 7 26 chr11 91645246 91645398 -30198458 - B1_Mur1 SINE Alu 0 149 1 2 1284 229 263 49 49 chr11 91645644 91645788 -30198068 + L1M3 LINE L1 4296 4439 -1701 2 1284 458 237 109 47 chr11 91645864 91646121 -30197735 + L1M3 LINE L1 4586 4858 -1282 2 1284 324 0 0 0 chr11 91646961 91646997 -30196859 + (TTATA)n Simple_repeat Simple_repeat 3 38 0 2 1284 689 302 55 30 chr11 91647043 91647477 -30196379 - L1MB8 LINE L1 -7 6171 5727 2 1284 1887 304 91 43 chr11 91647804 91648588 -30195268 - Lx8 LINE L1 -136 7337 6517 2 1284 390 315 47 74 chr11 91648618 91648916 -30194940 - L1M4b LINE L1 -5125 2209 1920 2 1284 227 219 71 20 chr11 91649068 91649166 -30194690 - L1M4b LINE L1 -5591 1743 1641 2 1284 244 224 58 12 chr11 91649175 91649261 -30194595 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 2 1284 218 217 0 0 chr11 91649561 91649607 -30194249 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1284 850 123 7 35 chr11 91650534 91650677 -30193179 - B1_Mus1 SINE Alu -9 139 1 2 1284 521 374 49 33 chr11 91650746 91651111 -30192745 + MER21B LTR ERV1 442 812 -51 2 1284 351 0 0 0 chr11 91651300 91651339 -30192517 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1284 456 345 111 45 chr11 91651459 91652281 -30191575 - L1M4b LINE L1 -5991 1343 468 2 1284 1389 258 57 17 chr11 91652754 91653105 -30190751 + MTD LTR MaLR 50 414 -5 2 1284 417 289 92 141 chr11 91653569 91653875 -30189981 - B4 SINE B4 0 292 2 2 1284 21 36 0 0 chr11 91655360 91655388 -30188468 + AT_rich Low_complexity Low_complexity 1 28 0 2 1284 8578 128 25 7 chr11 91656164 91657990 -30185866 - Lx3A LINE L1 -7 6974 5130 2 1284 10111 90 11 13 chr11 91657990 91659042 -30184814 + L1_Mur1 LINE L1 3610 4666 -1220 2 1284 2579 82 21 8 chr11 91659042 91659424 -30184432 + L1_Mus3 LINE L1 6244 6630 -8 2 1284 10111 90 11 13 chr11 91659424 91659875 -30183981 + L1_Mur1 LINE L1 4667 5110 -776 2 1284 1137 75 0 0 chr11 91660041 91660187 -30183669 + B1_Mm SINE Alu 2 147 0 2 1284 287 25 0 24 chr11 91660187 91660228 -30183628 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1284 429 20 0 0 chr11 91660468 91660518 -30183338 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1284 561 264 24 0 chr11 91660535 91660660 -30183196 - RSINE1 SINE B4 -33 132 5 2 1284 543 249 170 6 chr11 91661290 91661472 -30182384 - B3 SINE B2 0 216 5 2 1284 540 111 0 0 chr11 91661632 91661713 -30182143 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 2 1284 1499 22 50 0 chr11 91663402 91663582 -30180274 + B2_Mm1t SINE B2 1 189 -4 2 1284 202 29 57 0 chr11 91664282 91664317 -30179539 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1284 693 235 60 6 chr11 91664500 91664667 -30179189 + B2_Mm2 SINE B2 1 176 -19 2 1284 232 194 0 43 chr11 91664876 91664946 -30178910 - Lx9 LINE L1 -1 7643 7577 2 1284 922 259 82 12 chr11 91665013 91665342 -30178514 + Lx9 LINE L1 7122 7473 -171 2 1284 279 228 32 32 chr11 91666359 91666454 -30177402 + L1M3 LINE L1 5170 5264 -876 2 1284 231 309 50 83 chr11 91667158 91667278 -30176578 - ID_B1 SINE B4 -16 208 93 2 1284 526 366 41 11 chr11 91667646 91668011 -30175845 - RMER1C Other Other -485 857 428 2 1284 686 296 39 5 chr11 91668430 91668637 -30175219 - B3 SINE B2 0 216 3 2 1284 292 333 103 14 chr11 91668759 91668905 -30174951 - MER2 DNA MER2_type 0 345 187 2 1284 726 193 107 57 chr11 91669128 91669370 -30174486 - RMER6C LTR ERVK -334 422 156 2 1284 597 61 0 0 chr11 91669373 91669455 -30174401 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1284 646 192 0 13 chr11 91669483 91669636 -30174220 + (TA)n Simple_repeat Simple_repeat 1 151 0 2 1284 285 246 11 79 chr11 91669636 91669745 -30174111 + RLTR22_Mur LTR ERVK 1260 1391 -457 2 1284 1026 116 0 7 chr11 91671066 91671213 -30172643 + B1_Mus2 SINE Alu 2 147 0 2 1284 413 258 6 0 chr11 91671715 91671878 -30171978 + GA-rich Low_complexity Low_complexity 1 164 0 2 1284 1455 259 33 11 chr11 91671915 91672202 -30171654 + ORR1D2 LTR MaLR 1 295 -75 2 1284 4401 148 39 0 chr11 91672202 91672939 -30170917 + Lx2 LINE L1 6231 6996 -1 2 1284 1455 259 33 11 chr11 91672939 91673010 -30170846 + ORR1D2 LTR MaLR 296 366 -4 2 1284 21 0 0 0 chr11 91673333 91673354 -30170502 + AT_rich Low_complexity Low_complexity 1 21 0 2 1284 311 281 0 0 chr11 91673503 91673592 -30170264 - L1MA5 LINE L1 -24 6276 6188 2 1284 296 323 100 35 chr11 91673588 91673819 -30170037 + L1MA4A LINE L1 5834 6079 -224 2 1284 1823 131 17 99 chr11 91673891 91674246 -30169610 + ORR1B1 LTR MaLR 66 391 -3 2 1284 1150 70 0 0 chr11 91674254 91674397 -30169459 + B1_Mm SINE Alu 5 147 0 2 1284 1319 258 80 8 chr11 91674410 91674773 -30169083 + MTD LTR MaLR 23 411 -8 2 1284 292 365 67 24 chr11 91675036 91675244 -30168612 + MER58B DNA MER1_type 91 307 -34 2 1284 432 0 0 0 chr11 91675616 91675664 -30168192 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1284 545 157 27 7 chr11 91675662 91675810 -30168046 + CT-rich Low_complexity Low_complexity 3 153 0 2 1284 426 247 36 64 chr11 91675932 91676099 -30167757 + MTC LTR MaLR 1 169 -250 2 1284 242 312 0 0 chr11 91676686 91676750 -30167106 + PB1D10 SINE Alu 50 113 -4 2 1284 663 282 32 41 chr11 91677326 91677544 -30166312 + Lx6 LINE L1 7186 7401 -59 2 1284 800 242 48 42 chr11 91677592 91678036 -30165820 + L1M4 LINE L1 2731 3178 -2968 2 1284 228 216 0 0 chr11 91678126 91678177 -30165679 + L1M4 LINE L1 5778 5828 -346 2 1284 414 88 0 0 chr11 91678180 91678248 -30165608 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1284 282 95 0 0 chr11 91678251 91678293 -30165563 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1284 3646 82 60 15 chr11 91678474 91679008 -30164848 + L1Md_F2 LINE L1 6013 6570 -12 2 1284 12211 89 8 2 chr11 91679184 91681648 -30162208 - L1_Mus1 LINE L1 0 6567 4088 2 1284 2462 132 3 90 chr11 91681721 91682199 -30161657 - L1MA5A LINE L1 -393 5904 5430 2 1284 3270 244 78 13 chr11 91683524 91684438 -30159418 - Lx2B LINE L1 -7 6993 6021 2 1284 781 204 0 30 chr11 91684454 91684621 -30159235 + L1_Mur2 LINE L1 5044 5205 -672 3 1284 734 327 4 11 chr11 91684761 91685024 -30158832 - Lx7 LINE L1 -402 7294 7034 3 1284 249 361 125 12 chr11 91685091 91685259 -30158597 - MLT1K LTR MaLR -290 305 119 3 1284 187 352 11 21 chr11 91686408 91686501 -30157355 - L2a LINE L2 -86 3340 3249 3 1284 684 168 0 0 chr11 91686568 91686717 -30157139 + CT-rich Low_complexity Low_complexity 1 149 0 3 1284 3815 54 14 0 chr11 91688629 91689111 -30154745 - L1Md_F2 LINE L1 -10 6572 6084 3 1284 559 206 17 12 chr11 91689580 91689752 -30154104 + (TA)n Simple_repeat Simple_repeat 1 173 0 3 1284 213 156 22 0 chr11 91689770 91689815 -30154041 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1284 739 304 22 0 chr11 91689990 91690154 -30153702 + B3 SINE B2 25 188 -28 3 1284 447 19 0 0 chr11 91690154 91690206 -30153650 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1284 739 304 22 0 chr11 91690206 91690222 -30153634 + B3 SINE B2 189 208 -8 3 1284 240 163 0 0 chr11 91691262 91691305 -30152551 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1284 1407 237 155 0 chr11 91691377 91691744 -30152112 - Lx5 LINE L1 -163 6887 6464 3 1284 1579 65 0 9 chr11 91693740 91693956 -30149900 - L1_Mus1 LINE L1 -1 6566 6353 3 1284 3380 58 0 0 chr11 91693958 91694375 -30149481 + L1_Mus1 LINE L1 5947 6363 -204 3 1284 3347 100 6 6 chr11 91695002 91695493 -30148363 + L1_Mus4 LINE L1 6145 6635 -1 3 1284 813 296 122 35 chr11 91695858 91696177 -30147679 - ORR1E LTR MaLR -6 353 7 3 1284 544 185 41 7 chr11 91696295 91696442 -30147414 - Lx3C LINE L1 -3 6973 6822 3 1284 183 80 0 0 chr11 91696773 91696798 -30147058 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1284 351 0 0 0 chr11 91696984 91697023 -30146833 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1284 459 0 0 0 chr11 91697301 91697352 -30146504 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1284 294 29 0 0 chr11 91697352 91697386 -30146470 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1284 23 33 0 0 chr11 91697423 91697453 -30146403 + AT_rich Low_complexity Low_complexity 1 30 0 3 1284 2741 53 42 3 chr11 91698148 91698506 -30145350 + L1_Mus1 LINE L1 6195 6566 -1 3 1284 341 289 31 0 chr11 91698725 91698822 -30145034 - B4A SINE B4 -13 279 180 3 1284 267 31 0 0 chr11 91699022 91699054 -30144802 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1284 949 202 4 35 chr11 91699243 91699469 -30144387 + URR1B DNA MER1_type 3 221 -4 3 1284 24 32 0 0 chr11 91700219 91700250 -30143606 + AT_rich Low_complexity Low_complexity 1 31 0 3 1284 441 0 0 0 chr11 91700644 91700693 -30143163 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 3 1284 342 0 0 0 chr11 91700710 91700748 -30143108 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 3 1284 333 0 0 0 chr11 91700994 91701031 -30142825 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1284 567 0 0 0 chr11 91701031 91701093 -30142763 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1284 232 331 52 66 chr11 91702093 91702229 -30141627 + MLT1C LTR MaLR 3 136 -331 3 1284 600 236 24 60 chr11 91702519 91702686 -30141170 + MLT1C LTR MaLR 303 463 -4 3 1284 301 136 0 0 chr11 91703217 91703261 -30140595 - HAL1-3A_ME LINE L1 -839 2019 1976 3 1284 201 74 0 0 chr11 91703951 91703978 -30139878 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 3 1284 26 0 0 0 chr11 91704664 91704690 -30139166 + AT_rich Low_complexity Low_complexity 1 26 0 3 1284 30 0 0 0 chr11 91705257 91705287 -30138569 + AT_rich Low_complexity Low_complexity 1 30 0 3 1284 1307 288 97 35 chr11 91705681 91706288 -30137568 + Lx8 LINE L1 6818 7462 -11 3 1284 23 78 0 0 chr11 91706316 91706367 -30137489 + AT_rich Low_complexity Low_complexity 1 51 0 3 1284 27 73 0 0 chr11 91706440 91706495 -30137361 + AT_rich Low_complexity Low_complexity 1 55 0 3 1284 22 35 0 0 chr11 91706702 91706731 -30137125 + AT_rich Low_complexity Low_complexity 1 29 0 3 1284 427 232 56 40 chr11 91707011 91707209 -30136647 + RMER17C LTR ERVK 77 277 -133 3 1284 7050 108 6 11 chr11 91707565 91708619 -30135237 + L1_Mus4 LINE L1 5587 6634 -2 3 1284 243 0 0 0 chr11 91709767 91709794 -30134062 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1284 263 196 9 38 chr11 91709794 91709891 -30133965 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 3 1284 1887 148 0 28 chr11 91709891 91710211 -30133645 - RLTR10E LTR ERVK 0 311 1 3 1284 263 196 9 38 chr11 91710211 91710219 -30133637 + (CATATA)n Simple_repeat Simple_repeat 5 12 0 3 1284 297 0 0 0 chr11 91710736 91710769 -30133087 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1284 247 277 0 0 chr11 91711303 91711415 -30132441 + ORR1D2-int LTR MaLR 643 754 -755 3 1284 1059 79 0 0 chr11 91711315 91711454 -30132402 + B1_Mus2 SINE Alu 8 146 -1 3 1284 27 49 0 0 chr11 91711679 91711720 -30132136 + AT_rich Low_complexity Low_complexity 1 41 0 3 1284 326 156 77 15 chr11 91712223 91712288 -30131568 + ORR1D2 LTR MaLR 1 69 -301 3 1284 190 51 50 25 chr11 91712320 91712360 -30131496 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1284 2737 202 25 18 chr11 91712517 91713128 -30130728 + Lx4B LINE L1 6441 7055 -3 3 1284 674 109 0 9 chr11 91713406 91713517 -30130339 + L1_Mus1 LINE L1 6457 6566 -1 3 1284 265 221 78 17 chr11 91713577 91713605 -30130251 + L1_Mur2 LINE L1 2016 2048 -3829 3 1284 411 21 0 0 chr11 91713605 91713653 -30130203 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1284 265 221 78 17 chr11 91713653 91713673 -30130183 + L1_Mur2 LINE L1 2049 2068 -3809 3 1284 234 0 0 0 chr11 91713673 91713699 -30130157 + (CAA)n Simple_repeat Simple_repeat 1 26 0 3 1284 265 221 78 17 chr11 91713699 91713764 -30130092 + L1_Mur2 LINE L1 2069 2136 -3741 3 1284 562 200 30 37 chr11 91713769 91713904 -30129952 + B1_Mus2 SINE Alu 13 146 -1 3 1284 557 370 79 36 chr11 91714105 91714548 -30129308 - MLT1C LTR MaLR -2 465 4 3 1284 28 29 0 0 chr11 91715311 91715346 -30128510 + AT_rich Low_complexity Low_complexity 1 35 0 3 1284 537 284 0 0 chr11 91715750 91715859 -30127997 + RSINE1 SINE B4 34 142 -23 3 1284 624 145 0 0 chr11 91715859 91715990 -30127866 + (TC)n Simple_repeat Simple_repeat 2 132 0 3 1284 315 49 0 0 chr11 91715990 91716031 -30127825 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1284 238 216 67 0 chr11 91717354 91717488 -30126368 + (TA)n Simple_repeat Simple_repeat 1 143 0 3 1284 905 213 165 50 chr11 91720056 91720197 -30123659 - Lx7 LINE L1 -1 7695 7551 3 1284 232 27 0 51 chr11 91720197 91720236 -30123620 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 3 1284 905 213 165 50 chr11 91720236 91720415 -30123441 - Lx7 LINE L1 -146 7550 7339 3 1284 6236 111 37 11 chr11 91720439 91720949 -30122907 - Lx3_Mus LINE L1 -441 6568 6036 3 1284 360 0 0 0 chr11 91720949 91720989 -30122867 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 3 1284 6236 107 16 5 chr11 91720989 91721891 -30121965 - Lx3_Mus LINE L1 -974 6035 5137 3 1284 342 0 0 0 chr11 91721909 91721947 -30121909 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1284 582 219 18 0 chr11 91721947 91722061 -30121795 - Lx7 LINE L1 -772 6924 6809 3 1284 529 206 137 11 chr11 91722341 91722523 -30121333 + Lx9 LINE L1 7402 7606 -38 3 1284 228 288 152 0 chr11 91723235 91723301 -30120555 - 5S rRNA rRNA -35 86 11 3 1284 600 233 0 0 chr11 91724442 91724614 -30119242 + (TA)n Simple_repeat Simple_repeat 1 172 0 3 1284 534 250 0 0 chr11 91724626 91724794 -30119062 + (TA)n Simple_repeat Simple_repeat 1 168 0 3 1284 900 178 0 0 chr11 91724842 91725022 -30118834 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1284 4015 215 84 73 chr11 91725038 91725422 -30118434 + RMER12 LTR ERVK 1 373 -949 3 1284 2123 145 24 16 chr11 91725422 91725801 -30118055 + Lx2 LINE L1 6615 6996 -1 3 1284 4015 215 84 73 chr11 91725801 91726366 -30117490 + RMER12 LTR ERVK 374 917 -405 3 1284 228 67 0 0 chr11 91726366 91726396 -30117460 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1284 4015 230 119 72 chr11 91726396 91726698 -30117158 + RMER12 LTR ERVK 918 1182 -140 3 1284 7752 78 3 0 chr11 91727514 91728890 -30114966 + L1_Mus1 LINE L1 5188 6567 0 3 1284 868 310 125 11 chr11 91729011 91729363 -30114493 + MTD LTR MaLR 8 399 -20 3 1284 377 311 0 0 chr11 91730310 91730413 -30113443 + BC1_Mm scRNA scRNA 2 104 -48 3 1284 295 267 24 9 chr11 91730879 91730986 -30112870 + Lx8 LINE L1 5805 5915 -1558 3 1284 311 308 167 13 chr11 91731067 91731294 -30112562 - RMER12 LTR ERVK -318 1004 743 3 1284 180 111 0 0 chr11 91732110 91732137 -30111719 + (GGAGA)n Simple_repeat Simple_repeat 3 29 0 3 1284 991 65 0 7 chr11 91732507 91732646 -30111210 - L1_Mus4 LINE L1 -242 6394 6257 3 1284 1426 134 0 31 chr11 91732646 91732901 -30110955 + L1_Mus4 LINE L1 6390 6636 0 3 1284 314 115 16 0 chr11 91732915 91732976 -30110880 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 3 1284 688 337 84 48 chr11 91732977 91733392 -30110464 + Lx8 LINE L1 6264 6693 -780 3 1284 729 186 0 0 chr11 91733452 91733463 -30110393 + (TA)n Simple_repeat Simple_repeat 1 11 0 3 1284 333 0 0 0 chr11 91733463 91733500 -30110356 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1284 729 186 0 0 chr11 91733500 91733644 -30110212 + (TA)n Simple_repeat Simple_repeat 1 144 0 3 1284 596 257 31 36 chr11 91733645 91733867 -30109989 - Lx9 LINE L1 -127 7517 7297 3 1284 297 0 0 0 chr11 91735362 91735395 -30108461 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1284 883 126 111 19 chr11 91735843 91735855 -30108001 + ORR1B1 LTR MaLR 211 223 -171 3 1284 1077 89 0 0 chr11 91735855 91736001 -30107855 + B1_Mus1 SINE Alu 1 146 -2 3 1284 495 0 0 0 chr11 91736001 91736056 -30107800 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1284 883 126 111 19 chr11 91736056 91736204 -30107652 + ORR1B1 LTR MaLR 224 386 -8 3 1284 475 306 32 0 chr11 91736221 91736345 -30107511 - B3 SINE B2 -87 129 2 3 1284 239 265 15 0 chr11 91736766 91736834 -30107022 + L1MC LINE L1 5539 5607 -2178 3 1284 230 306 40 8 chr11 91736886 91737084 -30106772 + L1MD LINE L1 5675 5875 -289 3 1284 369 0 0 0 chr11 91738871 91738912 -30104944 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1284 231 146 0 0 chr11 91739073 91739114 -30104742 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1284 278 82 26 64 chr11 91739203 91739281 -30104575 + T-rich Low_complexity Low_complexity 1 75 0 3 1284 1085 101 0 0 chr11 91739281 91739429 -30104427 - B1_Mus1 SINE Alu 0 148 1 3 1284 659 298 58 61 chr11 91739795 91740056 -30103800 - B4 SINE B4 -4 288 29 3 1284 582 184 82 53 chr11 91740109 91740343 -30103513 - RMER17C LTR ERVK -137 273 42 3 1284 340 253 33 11 chr11 91740635 91740727 -30103129 + MTD LTR MaLR 323 416 -3 3 1284 5301 254 76 32 chr11 91742261 91743318 -30100538 + Lx6 LINE L1 5791 6881 -579 3 1284 549 30 0 0 chr11 91743318 91743385 -30100471 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1284 5301 254 76 32 chr11 91743385 91743901 -30099955 + Lx6 LINE L1 6882 7433 -27 3 1284 22 0 0 0 chr11 91743971 91743993 -30099863 + AT_rich Low_complexity Low_complexity 1 22 0 4 1284 542 69 10 29 chr11 91744673 91744777 -30099079 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 1284 222 384 0 0 chr11 91745965 91746038 -30097818 + ID4 SINE ID 8 80 -3 4 1284 237 196 0 0 chr11 91746187 91746243 -30097613 + (GTCTG)n Simple_repeat Simple_repeat 5 60 0 4 1284 319 375 31 8 chr11 91746243 91746372 -30097484 - B1_Mur4 SINE Alu -9 141 10 4 1284 234 229 47 35 chr11 91746950 91747036 -30096820 + Lx4B LINE L1 6965 7051 -7 4 1284 4154 199 16 24 chr11 91747079 91747956 -30095900 + Lx4B LINE L1 6189 7058 0 4 1284 502 324 68 26 chr11 91749113 91749285 -30094571 + B3A SINE B2 1 184 -14 4 1284 369 0 0 0 chr11 91749285 91749326 -30094530 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1284 502 324 68 26 chr11 91749326 91749343 -30094513 + B3A SINE B2 185 198 0 4 1284 360 273 158 22 chr11 91749458 91749634 -30094222 - B2_Mm2 SINE B2 -5 211 6 4 1284 1017 85 0 0 chr11 91749662 91749803 -30094053 + (TA)n Simple_repeat Simple_repeat 2 142 0 4 1284 472 338 83 50 chr11 91749829 91750030 -30093826 - B4 SINE B4 -4 288 70 4 1284 609 14 0 0 chr11 91750030 91750100 -30093756 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1284 472 338 83 50 chr11 91750100 91750138 -30093718 - B4 SINE B4 -223 69 41 4 1285 1112 63 23 0 chr11 91750526 91750701 -30093155 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1285 513 352 15 27 chr11 91750718 91750978 -30092878 - Lx8 LINE L1 -822 6651 6395 4 1285 894 290 84 55 chr11 91751033 91751344 -30092512 + Lx8 LINE L1 6722 7046 -427 4 1285 329 58 19 0 chr11 91751344 91751396 -30092460 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1285 894 290 84 55 chr11 91751396 91751500 -30092356 + Lx8 LINE L1 7047 7149 -324 4 1285 1188 275 139 39 chr11 91751592 91752230 -30091626 + RMER13A LTR ERVK 9 784 -124 4 1285 1115 65 0 0 chr11 91753009 91753147 -30090709 - B1_Mus2 SINE Alu -8 139 2 4 1285 1613 299 83 27 chr11 91753301 91753998 -30089858 + Lx9 LINE L1 6734 7469 -175 4 1285 252 250 0 0 chr11 91754001 91754065 -30089791 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 4 1285 459 0 0 0 chr11 91754088 91754139 -30089717 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1285 216 0 0 0 chr11 91754375 91754399 -30089457 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 4 1285 4509 185 15 7 chr11 91754399 91755263 -30088593 - Lx4B LINE L1 -18 7040 6170 4 1285 23 0 0 0 chr11 91755575 91755598 -30088258 + AT_rich Low_complexity Low_complexity 1 23 0 4 1285 743 313 32 11 chr11 91755874 91756158 -30087698 - Lx7 LINE L1 -464 7232 6943 4 1285 534 133 0 0 chr11 91756218 91756308 -30087548 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1285 560 298 53 0 chr11 91756313 91756484 -30087372 - ORR1C1 LTR MaLR -198 180 1 4 1285 198 0 0 0 chr11 91757007 91757029 -30086827 + (CAA)n Simple_repeat Simple_repeat 3 24 0 4 1285 24 77 0 0 chr11 91758263 91758315 -30085541 + AT_rich Low_complexity Low_complexity 1 52 0 4 1285 332 283 60 36 chr11 91758640 91758780 -30085076 - PB1D10 SINE Alu 0 147 1 4 1285 365 281 156 10 chr11 91759320 91759525 -30084331 - RMER15 LTR ERVL -67 508 274 4 1285 3180 54 0 12 chr11 91759806 91760221 -30083635 + L1Md_F2 LINE L1 6163 6572 -10 4 1285 1141 104 0 0 chr11 91760234 91760398 -30083458 + B2_Mm2 SINE B2 1 164 -31 4 1285 348 24 0 0 chr11 91760760 91760801 -30083055 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1285 22 0 0 0 chr11 91761054 91761076 -30082780 + AT_rich Low_complexity Low_complexity 1 22 0 4 1285 923 261 27 50 chr11 91761933 91762232 -30081624 + Lx8 LINE L1 7002 7293 -180 4 1285 333 68 0 0 chr11 91762277 91762321 -30081535 + (TGG)n Simple_repeat Simple_repeat 1 44 0 4 1285 261 291 8 25 chr11 91762411 91762531 -30081325 + Lx8 LINE L1 7353 7470 -3 4 1285 345 343 0 0 chr11 91763894 91764002 -30079854 + ID_B1 SINE B4 115 222 -2 4 1285 237 328 49 32 chr11 91764040 91764163 -30079693 + MER63D DNA AcHobo 167 291 -770 4 1285 752 335 93 42 chr11 91764209 91764713 -30079143 + MER68 LTR ERVL 18 547 -16 4 1285 718 195 0 7 chr11 91765085 91765235 -30078621 - Lx2 LINE L1 0 6997 6849 4 1285 270 0 0 0 chr11 91765652 91765682 -30078174 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1285 634 286 148 15 chr11 91766945 91767417 -30076439 + RCHARR1 DNA MER1_type 51 741 -233 4 1285 378 0 0 0 chr11 91767557 91767599 -30076257 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1285 21 57 0 0 chr11 91767728 91767763 -30076093 + AT_rich Low_complexity Low_complexity 1 35 0 4 1285 204 191 21 0 chr11 91767836 91767853 -30076003 + (CA)n Simple_repeat Simple_repeat 1 17 0 4 1285 407 78 16 0 chr11 91767853 91767917 -30075939 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1285 204 191 21 0 chr11 91767917 91767946 -30075910 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1285 25 0 0 0 chr11 91768775 91768800 -30075056 + AT_rich Low_complexity Low_complexity 1 25 0 4 1285 288 0 0 0 chr11 91769227 91769259 -30074597 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1285 519 17 0 0 chr11 91769259 91769318 -30074538 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1285 489 34 0 0 chr11 91770006 91770065 -30073791 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1285 468 91 0 0 chr11 91770346 91770412 -30073444 + (TA)n Simple_repeat Simple_repeat 1 66 0 4 1285 418 274 21 62 chr11 91770859 91771003 -30072853 + B1F SINE Alu 12 149 0 4 1285 200 59 29 0 chr11 91771011 91771045 -30072811 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1285 532 307 107 23 chr11 91773050 91773313 -30070543 - Lx7 LINE L1 -891 6805 6521 4 1285 387 0 0 0 chr11 91773337 91773380 -30070476 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 1285 1832 24 0 0 chr11 91773624 91773833 -30070023 + L1Md_A LINE L1 5378 5586 -297 4 1285 8236 34 5 0 chr11 91773833 91774824 -30069032 + L1Md_A LINE L1 5587 6582 0 4 1285 409 293 7 85 chr11 91774846 91774999 -30068857 + MTD LTR MaLR 1 141 -278 4 1285 1760 239 77 24 chr11 91775020 91775503 -30068353 + RMER19C LTR ERVK 138 611 0 4 1285 1194 248 18 4 chr11 91775503 91775778 -30068078 + MTD LTR MaLR 136 414 -5 4 1285 814 180 11 0 chr11 91776501 91776679 -30067177 + CT-rich Low_complexity Low_complexity 1 180 0 4 1285 234 100 50 0 chr11 91776684 91776724 -30067132 + (TTCCC)n Simple_repeat Simple_repeat 4 45 0 4 1285 328 324 90 14 chr11 91776724 91776868 -30066988 - HAL1-3A_ME LINE L1 -419 2439 2285 4 1285 226 171 0 47 chr11 91776868 91776890 -30066966 + C-rich Low_complexity Low_complexity 26 46 0 4 1285 1179 117 0 0 chr11 91776890 91777070 -30066786 + (CCCCCT)n Simple_repeat Simple_repeat 1 180 0 4 1285 226 171 0 47 chr11 91777070 91777090 -30066766 + C-rich Low_complexity Low_complexity 6 25 0 4 1285 674 55 11 0 chr11 91777090 91777181 -30066675 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 4 1285 770 277 15 0 chr11 91778458 91778664 -30065192 - B3 SINE B2 -5 211 3 4 1285 243 152 0 0 chr11 91778865 91778911 -30064945 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1285 5602 123 61 6 chr11 91778913 91779815 -30064041 - Lx3A LINE L1 -2 6979 6028 4 1285 861 197 107 15 chr11 91779939 91780135 -30063721 + ORR1B1 LTR MaLR 1 214 -180 4 1285 1062 105 0 0 chr11 91780155 91780298 -30063558 - B1_Mus1 SINE Alu -5 143 1 4 1285 971 229 42 0 chr11 91780298 91780512 -30063344 + ORR1B1 LTR MaLR 164 386 -8 4 1285 276 357 53 9 chr11 91780523 91780636 -30063220 - MER74C LTR ERVL -224 236 119 4 1285 2296 83 114 6 chr11 91781801 91782153 -30061703 + RLTR10 LTR ERVK 1 390 0 4 1285 4246 35 22 0 chr11 91782153 91782662 -30061194 + RLTR10-int LTR ERVK 302 821 -1166 4 1285 3209 23 32 20 chr11 91782772 91783178 -30060678 - IAPLTR2a LTR ERVK 0 411 1 4 1285 8642 259 35 34 chr11 91783203 91788676 -30055180 + RLTR10-int LTR ERVK 627 5207 -1335 4 1285 2288 75 119 11 chr11 91788681 91789033 -30054823 - RLTR10 LTR ERVK 0 390 1 4 1285 4551 180 64 93 chr11 91790810 91791247 -30052609 - L1_Mur3 LINE L1 -3338 2542 2082 4 1285 327 85 0 0 chr11 91791247 91791294 -30052562 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1285 4551 180 64 93 chr11 91791294 91791594 -30052262 - L1_Mur3 LINE L1 -3799 2081 1773 4 1285 3337 50 7 2 chr11 91791594 91792017 -30051839 - L1Md_F3 LINE L1 0 6584 6160 4 1285 4551 205 65 61 chr11 91792017 91793396 -30050460 - L1_Mur3 LINE L1 -4108 1772 434 4 1285 295 333 23 0 chr11 91793399 91793486 -30050370 - B4A SINE B4 -202 90 2 4 1285 2069 276 70 44 chr11 91794151 91795069 -30048787 + L1_Rod LINE L1 2234 3175 -2672 4 1285 219 69 0 0 chr11 91795137 91795166 -30048690 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1285 496 356 109 19 chr11 91795317 91795683 -30048173 - MLT1C LTR MaLR -5 462 64 4 1285 22 0 0 0 chr11 91795683 91795705 -30048151 + AT_rich Low_complexity Low_complexity 1 22 0 4 1285 308 338 109 9 chr11 91796135 91796365 -30047491 + MLT1C LTR MaLR 24 276 -191 4 1285 22 0 0 0 chr11 91796651 91796673 -30047183 + AT_rich Low_complexity Low_complexity 1 22 0 4 1285 2307 89 25 3 chr11 91796968 91797295 -30046561 + Lx3_Mus LINE L1 6396 6729 -280 4 1285 230 288 86 12 chr11 91798885 91798966 -30044890 - B3A SINE B2 -109 89 3 4 1285 201 94 0 0 chr11 91799498 91799530 -30044326 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1285 459 0 0 0 chr11 91800501 91800552 -30043304 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1285 1397 331 36 43 chr11 91800900 91801614 -30042242 + Lx9 LINE L1 6741 7449 -195 4 1285 366 91 0 0 chr11 91801622 91801677 -30042179 + (CATA)n Simple_repeat Simple_repeat 2 56 0 4 1285 405 0 0 0 chr11 91802383 91802428 -30041428 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1285 539 354 30 4 chr11 91802432 91802662 -30041194 - RMER5 LTR ERV1 -66 468 233 4 1285 575 231 29 59 chr11 91802742 91802912 -30040944 - Lx7 LINE L1 -1785 5911 5747 4 1285 3501 203 47 23 chr11 91802910 91803421 -30040435 - Lx7 LINE L1 -1557 6139 5608 4 1285 345 47 0 0 chr11 91803421 91803464 -30040392 + (CATA)n Simple_repeat Simple_repeat 1 43 0 4 1285 3501 184 58 16 chr11 91803464 91803964 -30039892 - Lx7 LINE L1 -273 5607 5085 4 1285 1522 230 48 5 chr11 91803961 91804354 -30039502 + L1_Mur3 LINE L1 3440 3849 -2031 4 1285 216 186 23 0 chr11 91804987 91805030 -30038826 + L2c LINE L2 3343 3386 -1 5 1285 613 168 53 6 chr11 91806391 91806508 -30037348 - ORR1A3-int LTR MaLR -1433 147 4 5 1285 1618 118 79 25 chr11 91806508 91806537 -30037319 - ORR1A3 LTR MaLR -36 290 267 5 1285 2482 131 12 15 chr11 91806537 91806941 -30036915 + RLTR9D LTR ERVK 1 403 0 5 1285 1618 118 79 25 chr11 91806941 91807186 -30036670 - ORR1A3 LTR MaLR -60 266 1 5 1285 423 224 30 67 chr11 91807206 91807340 -30036516 - MTEb LTR MaLR -245 134 6 5 1285 627 86 67 25 chr11 91807990 91808109 -30035747 - L1_Mus3 LINE L1 0 6638 6515 5 1285 414 278 90 28 chr11 91808185 91808363 -30035493 - B3A SINE B2 -7 191 3 5 1285 3218 248 86 69 chr11 91809246 91809525 -30034331 - Lx7 LINE L1 -5 7691 7373 5 1285 180 0 0 0 chr11 91809525 91809545 -30034311 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1285 3218 248 86 69 chr11 91809545 91810420 -30033436 - Lx7 LINE L1 -324 7372 6519 5 1285 477 249 68 16 chr11 91811009 91811201 -30032655 + L1MB8 LINE L1 5605 5806 -378 5 1285 22 0 0 0 chr11 91811201 91811223 -30032633 + AT_rich Low_complexity Low_complexity 1 22 0 5 1285 316 265 56 47 chr11 91811229 91811443 -30032413 + L1MB8 LINE L1 5875 6090 -88 5 1285 1428 28 0 0 chr11 91811453 91811717 -30032139 + L1Md_T LINE L1 6406 6582 0 5 1285 21 0 0 0 chr11 91812621 91812642 -30031214 + AT_rich Low_complexity Low_complexity 1 21 0 5 1285 2723 96 40 0 chr11 91814264 91814669 -30029187 - BGLII LTR ERVK 0 421 1 5 1285 3193 205 60 35 chr11 91814669 91815573 -30028283 - RMER3D-int LTR ERVK 0 2842 1917 5 1285 514 192 67 30 chr11 91815586 91815720 -30028136 - RMER3D-int LTR ERVK -1163 1679 1541 5 1285 2039 172 3 18 chr11 91815760 91816057 -30027799 - RMER3D-int LTR ERVK -1309 1533 1239 5 1285 4428 29 0 0 chr11 91816057 91816570 -30027286 - L1Md_T LINE L1 -12 6570 6058 5 1285 2039 166 289 9 chr11 91816570 91816747 -30027109 - RMER3D-int LTR ERVK -1604 1238 1014 5 1285 401 143 52 26 chr11 91816792 91816907 -30026949 + CT-rich Low_complexity Low_complexity 3 120 0 5 1285 245 143 0 0 chr11 91816907 91816942 -30026914 + (CCCCCT)n Simple_repeat Simple_repeat 3 37 0 5 1285 808 213 116 51 chr11 91816942 91817408 -30026448 - RMER3D-int LTR ERVK -1771 1071 489 5 1285 652 165 76 49 chr11 91817426 91817611 -30026245 - RMER3D-int LTR ERVK -1994 848 659 5 1285 572 208 0 54 chr11 91817610 91817778 -30026078 - RMER3D-int LTR ERVK -2032 810 652 5 1285 2693 107 40 5 chr11 91818151 91818556 -30025300 - BGLII LTR ERVK -2 419 1 5 1285 315 0 0 0 chr11 91819921 91819956 -30023900 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1285 621 311 38 92 chr11 91819994 91820309 -30023547 + Lx9 LINE L1 6398 6695 -949 5 1285 1071 185 19 28 chr11 91820314 91820525 -30023331 - ORR1C2 LTR MaLR 0 384 176 5 1285 651 72 27 0 chr11 91820526 91820637 -30023219 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 5 1285 740 211 35 116 chr11 91820662 91820860 -30022996 - ORR1C2 LTR MaLR -192 182 1 5 1285 1023 309 94 18 chr11 91820862 91821320 -30022536 + Lx9 LINE L1 6698 7190 -454 5 1285 2266 233 19 34 chr11 91821990 91822528 -30021328 + RLTR17 LTR ERVK 105 634 -58 5 1285 6852 82 82 0 chr11 91822573 91823604 -30020252 + MusHAL1 LINE L1 708 1822 -890 5 1285 249 92 29 44 chr11 91823747 91823815 -30020041 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 5 1285 29 0 0 0 chr11 91823911 91823940 -30019916 + AT_rich Low_complexity Low_complexity 1 29 0 5 1285 3486 160 76 23 chr11 91823989 91824698 -30019158 + RMER6A LTR ERVK 6 752 -4 5 1285 7343 103 5 17 chr11 91826168 91827333 -30016523 + Lx LINE L1 5502 6651 -3 5 1285 21 0 0 0 chr11 91827467 91827488 -30016368 + AT_rich Low_complexity Low_complexity 1 21 0 5 1285 273 119 0 0 chr11 91828635 91828677 -30015179 + (TCC)n Simple_repeat Simple_repeat 1 42 0 5 1285 389 277 42 49 chr11 91828736 91828880 -30014976 - RMER15 LTR ERVL -430 145 3 5 1285 475 163 12 0 chr11 91829096 91829182 -30014674 + URR1A DNA MER1_type 50 136 -90 5 1285 6398 212 28 19 chr11 91829425 91831219 -30012637 - Lx5 LINE L1 0 7050 5241 5 1285 423 0 0 0 chr11 91831219 91831266 -30012590 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1285 6236 201 20 15 chr11 91831266 91831942 -30011914 - Lx5 LINE L1 -637 5240 4552 5 1285 4776 133 8 0 chr11 91831937 91832672 -30011184 - L1_Mm LINE L1 -60 5823 5083 5 1285 653 164 9 0 chr11 91832671 91832787 -30011069 - Lx5 LINE L1 -1327 4553 4437 5 1285 2552 144 63 24 chr11 91832791 91833254 -30010602 - L1_Mur1 LINE L1 0 5886 5406 5 1285 1251 210 28 8 chr11 91833255 91833505 -30010351 - Lx5 LINE L1 -6015 1071 817 5 1285 270 315 102 0 chr11 91833566 91833693 -30010163 - Lx5 LINE L1 -6571 515 376 5 1285 485 183 0 0 chr11 91833701 91833783 -30010073 + URR1A DNA MER1_type 144 225 -1 5 1285 330 279 104 37 chr11 91833886 91834050 -30009806 + MTEa LTR MaLR 205 379 0 5 1285 255 61 0 0 chr11 91834362 91834395 -30009461 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 1285 381 92 0 0 chr11 91835267 91835332 -30008524 - L1_Mus3 LINE L1 0 6638 6574 5 1285 736 251 50 98 chr11 91836921 91837279 -30006577 - L1MC1 LINE L1 -485 5848 5508 5 1285 486 309 55 61 chr11 91837278 91837753 -30006103 - L1MC1 LINE L1 -2131 4015 3544 5 1285 652 242 152 7 chr11 91838284 91838422 -30005434 - Lx9 LINE L1 -6 7638 7471 5 1285 387 89 0 0 chr11 91838422 91838478 -30005378 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1285 652 242 152 7 chr11 91838478 91838634 -30005222 - Lx9 LINE L1 -174 7470 7302 5 1285 872 190 129 5 chr11 91839101 91839302 -30004554 - URR1A DNA MER1_type 0 226 1 5 1285 1003 234 99 36 chr11 91840292 91840425 -30003431 - Lx9 LINE L1 -10 7634 7476 5 1285 372 22 0 0 chr11 91840425 91840470 -30003386 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1285 219 69 0 0 chr11 91840470 91840498 -30003358 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1285 1003 234 99 36 chr11 91840498 91840775 -30003081 - Lx9 LINE L1 -169 7475 7198 5 1285 2150 133 0 0 chr11 91841629 91841976 -30001880 - L1_Mur2 LINE L1 -1597 4280 3934 5 1285 7267 140 5 11 chr11 91841973 91843605 -30000251 + Lx LINE L1 5032 6651 -3 5 1285 819 142 51 19 chr11 91845159 91845317 -29998539 - Lx3A LINE L1 -8 6973 6811 5 1285 773 234 65 15 chr11 91845584 91845784 -29998072 + B3 SINE B2 1 210 -6 5 1285 463 319 88 66 chr11 91846252 91846934 -29996922 - L1MA9 LINE L1 -1 6311 5615 5 1285 322 267 124 35 chr11 91846968 91847170 -29996686 - L1M3c LINE L1 -4717 1424 1205 5 1285 311 311 24 63 chr11 91847702 91847829 -29996027 - RSINE1 SINE B4 -31 134 13 5 1285 1847 264 105 34 chr11 91849061 91849821 -29994035 + Lx9 LINE L1 6827 7640 -4 5 1285 369 321 118 27 chr11 91850539 91850760 -29993096 - FordPrefect DNA Tip100 -22 1661 1421 5 1285 315 0 0 0 chr11 91850832 91850867 -29992989 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1285 1040 93 0 0 chr11 91850867 91851006 -29992850 - B1_Mus1 SINE Alu -9 139 1 5 1285 1039 374 119 26 chr11 91851393 91851704 -29992152 - FordPrefect DNA Tip100 -369 1314 951 5 1285 4350 117 85 20 chr11 91851704 91852457 -29991399 - RLTR13B4 LTR ERVK -1 802 1 5 1285 1039 374 119 26 chr11 91852457 91853012 -29990844 - FordPrefect DNA Tip100 -733 950 369 5 1285 219 314 71 0 chr11 91853155 91853225 -29990631 + ID4 SINE ID 9 83 0 5 1285 462 286 46 10 chr11 91853545 91853739 -29990117 + L1MD3 LINE L1 7379 7579 -416 5 1285 222 37 0 0 chr11 91853756 91853783 -29990073 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 5 1285 349 279 103 43 chr11 91853838 91854070 -29989786 - Lx7 LINE L1 0 7696 7451 5 1285 180 0 0 0 chr11 91854638 91854658 -29989198 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1285 248 0 31 0 chr11 91855778 91855810 -29988046 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1285 180 0 0 0 chr11 91855841 91855861 -29987995 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 5 1285 515 385 38 15 chr11 91856536 91856800 -29987056 - B4A SINE B4 -18 274 5 5 1285 234 128 0 0 chr11 91857773 91857812 -29986044 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1285 2262 231 76 102 chr11 91857819 91858802 -29985054 + RMER17B LTR ERVK 1 958 0 5 1285 451 138 11 11 chr11 91859757 91859845 -29984011 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 5 1285 456 340 75 44 chr11 91859977 91860205 -29983651 + MTE2a LTR MaLR 136 370 -9 5 1285 21 0 0 0 chr11 91860389 91860410 -29983446 + AT_rich Low_complexity Low_complexity 1 21 0 5 1285 708 282 48 0 chr11 91860412 91860618 -29983238 - B3 SINE B2 0 216 1 5 1285 535 378 12 44 chr11 91860733 91860982 -29982874 - B4A SINE B4 -44 248 8 5 1285 195 100 0 0 chr11 91861059 91861089 -29982767 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 5 1285 553 219 42 0 chr11 91861168 91861287 -29982569 - L3 LINE CR1 -4360 129 6 5 1285 332 292 28 9 chr11 91861577 91861684 -29982172 - MTD LTR MaLR -302 117 9 5 1285 992 214 24 19 chr11 91862108 91862313 -29981543 - RLTR18B LTR ERVK -6 506 301 5 1285 770 306 33 26 chr11 91862348 91862653 -29981203 - RLTR18B LTR ERVK -205 307 1 5 1285 249 108 0 0 chr11 91862930 91862967 -29980889 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1285 4371 187 25 6 chr11 91862999 91863749 -29980107 - Lx LINE L1 -18 6636 5889 5 1285 263 72 0 23 chr11 91863749 91863792 -29980064 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1285 4371 187 25 6 chr11 91863792 91863879 -29979977 - Lx LINE L1 -766 5888 5784 5 1285 194 81 27 0 chr11 91863884 91863921 -29979935 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 5 1285 1116 100 0 29 chr11 91863922 91864097 -29979759 + L1_Mus2 LINE L1 6397 6566 0 5 1285 11273 156 32 1 chr11 91864123 91866139 -29977717 - L1_Mur2 LINE L1 -86 5791 3714 5 1285 29 0 0 0 chr11 91866303 91866332 -29977524 + AT_rich Low_complexity Low_complexity 1 29 0 5 1285 436 344 52 10 chr11 91867064 91867515 -29976341 + L1MA4 LINE L1 5545 6025 -272 5 1285 469 0 33 0 chr11 91867812 91867873 -29975983 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1285 431 35 18 0 chr11 91868405 91868462 -29975394 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1285 6733 117 39 73 chr11 91868744 91870422 -29973434 + L1_Mus4 LINE L1 5058 6630 -6 5 1285 603 108 0 0 chr11 91871024 91871117 -29972739 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 1285 526 172 7 40 chr11 91871748 91871899 -29971957 + CT-rich Low_complexity Low_complexity 3 148 0 5 1285 3522 221 74 15 chr11 91871934 91872781 -29971075 + Lx7 LINE L1 5961 6857 -839 5 1285 3649 213 14 15 chr11 91872983 91873699 -29970157 - RMER13A LTR ERVK 0 860 146 5 1285 619 260 46 47 chr11 91873698 91873922 -29969934 - RMER13B LTR ERVK -372 270 6 5 1285 25 0 0 0 chr11 91874267 91874292 -29969564 + AT_rich Low_complexity Low_complexity 1 25 0 5 1285 3494 163 74 8 chr11 91874376 91875039 -29968817 - Lx3C LINE L1 0 6976 6270 5 1285 4613 133 14 2 chr11 91875039 91876021 -29967835 - Lx3C LINE L1 -835 6141 5156 5 1285 28 79 0 0 chr11 91876159 91876222 -29967634 + AT_rich Low_complexity Low_complexity 1 63 0 5 1285 696 53 35 17 chr11 91876893 91877008 -29966848 + L1Md_F2 LINE L1 6465 6581 -1 5 1285 432 37 0 0 chr11 91877261 91877315 -29966541 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1285 26 30 0 0 chr11 91877399 91877432 -29966424 + AT_rich Low_complexity Low_complexity 1 33 0 5 1285 21 57 0 0 chr11 91877656 91877691 -29966165 + AT_rich Low_complexity Low_complexity 1 35 0 6 1285 232 229 0 0 chr11 91878047 91878095 -29965761 + (TAGG)n Simple_repeat Simple_repeat 2 49 0 6 1285 499 196 0 14 chr11 91878098 91878238 -29965618 + (TA)n Simple_repeat Simple_repeat 1 138 0 6 1285 200 262 24 12 chr11 91878244 91878329 -29965527 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 6 1285 189 147 0 0 chr11 91878341 91878375 -29965481 + (CATA)n Simple_repeat Simple_repeat 2 35 0 6 1285 225 0 0 0 chr11 91878617 91878642 -29965214 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1285 414 321 114 0 chr11 91879917 91880048 -29963808 + B3A SINE B2 2 147 -51 6 1285 477 0 0 0 chr11 91880065 91880118 -29963738 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1285 1635 245 74 25 chr11 91880742 91880980 -29962876 + RMER5 LTR ERV1 10 258 -276 6 1285 180 0 0 0 chr11 91880980 91881000 -29962856 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1285 1635 245 74 25 chr11 91881000 91881247 -29962609 + RMER5 LTR ERV1 259 518 -16 6 160 774 117 0 0 chr11 91881443 91881563 -29962293 + (GAAA)n Simple_repeat Simple_repeat 2 121 0 6 1286 697 272 134 11 chr11 91881693 91881961 -29961895 - Tigger7 DNA MER2_type -44 2447 2147 6 1286 310 340 24 60 chr11 91882008 91882174 -29961682 - Tigger7 DNA MER2_type -2330 161 2 6 1286 1169 297 134 50 chr11 91882268 91882687 -29961169 + Lx8 LINE L1 6799 7246 -227 6 1286 180 0 0 0 chr11 91882687 91882707 -29961149 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1286 1169 297 134 50 chr11 91882707 91882908 -29960948 + Lx8 LINE L1 7247 7470 -3 6 1286 1426 342 48 22 chr11 91883254 91883941 -29959915 + Lx8 LINE L1 6337 7041 -432 6 1286 312 362 52 41 chr11 91885098 91885366 -29958490 + Lx8 LINE L1 6966 7236 -237 6 1286 806 268 76 10 chr11 91885483 91885735 -29958121 - Lx5 LINE L1 -4 7054 6759 6 1286 753 93 0 0 chr11 91885784 91885891 -29957965 + (CTTTG)n Simple_repeat Simple_repeat 2 108 0 6 1286 856 239 83 58 chr11 91885893 91886250 -29957606 - RLTR11B LTR ERVK -65 357 1 6 1286 400 272 22 0 chr11 91886250 91886342 -29957514 - Lx5 LINE L1 -286 6764 6671 6 1286 612 0 0 0 chr11 91886346 91886414 -29957442 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 6 1286 1377 69 0 4 chr11 91886417 91886693 -29957163 + (TTTC)n Simple_repeat Simple_repeat 1 275 0 6 1286 2816 43 0 3 chr11 91887324 91887676 -29956180 + L1Md_F3 LINE L1 6219 6569 -15 6 1286 1178 132 21 5 chr11 91887704 91887894 -29955962 + B2_Mm2 SINE B2 3 195 0 6 1286 281 284 125 57 chr11 91889241 91889498 -29954358 + ERVL-E-int LTR ERVL 2269 2646 -3111 6 1286 286 365 17 6 chr11 91889918 91890097 -29953759 - Lx9 LINE L1 -202 7442 7262 6 1286 387 0 0 0 chr11 91890097 91890140 -29953716 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1286 1978 309 53 29 chr11 91890141 91890895 -29952961 - Lx9 LINE L1 -468 7176 6405 6 1286 477 341 47 6 chr11 91891681 91891852 -29952004 + B4 SINE B4 2 179 -113 6 1286 2527 239 22 16 chr11 91892664 91893331 -29950525 + Lx9 LINE L1 6964 7634 -10 6 1286 540 42 0 0 chr11 91893455 91893526 -29950330 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 6 1286 497 289 0 99 chr11 91893539 91893681 -29950175 + RSINE1 SINE B4 12 139 -26 6 1286 216 0 0 0 chr11 91893688 91893712 -29950144 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1286 305 229 10 40 chr11 91894186 91894286 -29949570 + CT-rich Low_complexity Low_complexity 4 100 0 6 1286 303 182 0 43 chr11 91894308 91894377 -29949479 - ID4_ SINE ID -13 70 5 6 1286 459 0 0 0 chr11 91894553 91894604 -29949252 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1286 23 0 0 0 chr11 91895687 91895710 -29948146 + AT_rich Low_complexity Low_complexity 1 23 0 6 1286 332 319 0 0 chr11 91895879 91895948 -29947908 - RSINE1 SINE B4 -94 71 3 6 1286 440 126 20 59 chr11 91896749 91896850 -29947006 + L1_Mus3 LINE L1 6542 6638 0 6 1286 261 47 0 0 chr11 91897134 91897177 -29946679 - Lx LINE L1 -6 6648 6606 6 1286 5277 106 15 26 chr11 91897784 91898597 -29945259 + Lx3A LINE L1 6162 6965 -16 6 1286 393 75 0 0 chr11 91898599 91898652 -29945204 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 6 1286 246 194 15 61 chr11 91899303 91899369 -29944487 - MT2_Mm LTR ERVL -43 450 388 6 1286 239 114 23 0 chr11 91899408 91899452 -29944404 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1286 291 208 61 20 chr11 91900223 91900321 -29943535 + L1MB1 LINE L1 5877 5978 -190 6 1286 885 272 25 123 chr11 91900618 91901251 -29942605 - Lx9 LINE L1 -2 7642 7072 6 1286 857 274 21 13 chr11 91902241 91902478 -29941378 - Lx6 LINE L1 -12 7448 7210 6 1286 516 291 20 67 chr11 91902528 91902550 -29941306 - B3 SINE B2 -26 190 170 6 1286 246 62 0 0 chr11 91902550 91902582 -29941274 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1286 516 291 20 67 chr11 91902582 91902754 -29941102 - B3 SINE B2 -47 169 5 6 1286 64 43 0 0 chr11 91902828 91902920 -29940936 + AT_rich Low_complexity Low_complexity 1 92 0 6 1286 192 200 0 0 chr11 91902985 91903055 -29940801 + A-rich Low_complexity Low_complexity 1 70 0 6 1286 1238 204 69 4 chr11 91903172 91903418 -29940438 + ORR1B1 LTR MaLR 133 394 0 6 1286 345 222 0 0 chr11 91903420 91903501 -29940355 - Lx7 LINE L1 -226 7470 7390 6 1286 4783 213 23 1 chr11 91903498 91904467 -29939389 - Lx3C LINE L1 -169 6807 5818 6 1286 4943 156 41 7 chr11 91904464 91904895 -29938961 + L1_Mur2 LINE L1 4331 4766 -1111 6 1286 558 0 0 0 chr11 91904895 91904957 -29938899 + (AATAG)n Simple_repeat Simple_repeat 4 65 0 6 1286 4943 156 41 7 chr11 91904957 91905448 -29938408 + L1_Mur2 LINE L1 4767 5284 -593 6 1286 471 348 24 14 chr11 91905531 91905738 -29938118 + B3 SINE B2 2 210 -6 6 1286 9377 113 9 4 chr11 91906355 91908030 -29935826 + Lx3A LINE L1 5295 6974 -7 6 1286 25 0 0 0 chr11 91908030 91908055 -29935801 + AT_rich Low_complexity Low_complexity 1 25 0 6 1286 2477 251 45 92 chr11 91908080 91909031 -29934825 - RMER17B LTR ERVK -46 912 6 6 1286 636 106 0 0 chr11 91909032 91909126 -29934730 + (TAA)n Simple_repeat Simple_repeat 1 94 0 6 1286 225 273 133 57 chr11 91909231 91909267 -29934589 + PB1D9 SINE Alu 1 113 -7 6 1286 376 203 58 0 chr11 91909267 91909336 -29934520 + ID_B1 SINE B4 145 217 -7 6 1286 252 0 0 0 chr11 91909345 91909373 -29934483 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1286 230 224 11 23 chr11 91909975 91910062 -29933794 + (TA)n Simple_repeat Simple_repeat 1 86 0 6 1286 355 152 38 0 chr11 91910063 91910168 -29933688 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 6 1286 252 0 0 0 chr11 91910681 91910709 -29933147 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 6 1286 319 355 68 57 chr11 91910807 91911070 -29932786 + MTEb LTR MaLR 20 285 -94 6 1286 21 57 0 0 chr11 91911101 91911136 -29932720 + AT_rich Low_complexity Low_complexity 1 35 0 6 1286 3567 164 44 5 chr11 91911143 91911774 -29932082 - Lx2B LINE L1 -322 6678 6023 6 1286 820 173 6 12 chr11 91911768 91911932 -29931924 - L1_Mur2 LINE L1 -551 5326 5164 6 1286 1087 102 11 6 chr11 91911981 91912158 -29931698 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 6 1286 455 216 155 25 chr11 91912246 91912501 -29931355 - Lx6 LINE L1 -7 7689 7356 6 1286 361 356 36 48 chr11 91912520 91912688 -29931168 + B3A SINE B2 33 198 0 6 1286 23 33 0 0 chr11 91912818 91912848 -29931008 + AT_rich Low_complexity Low_complexity 1 30 0 6 1286 587 105 78 31 chr11 91914008 91914136 -29929720 - Lx3_Mus LINE L1 -852 6157 6024 6 1286 3132 77 115 2 chr11 91914136 91914579 -29929277 + Lx3_Mus LINE L1 6517 7009 0 6 1286 222 62 0 0 chr11 91915264 91915296 -29928560 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1286 234 0 0 0 chr11 91915301 91915327 -29928529 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1286 438 252 187 22 chr11 91915546 91915680 -29928176 + B3A SINE B2 4 159 -39 6 1286 387 0 0 0 chr11 91915688 91915731 -29928125 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1286 25 65 0 0 chr11 91915924 91915970 -29927886 + AT_rich Low_complexity Low_complexity 1 46 0 6 1286 402 301 93 33 chr11 91915974 91916125 -29927731 - RSINE1 SINE B4 -2 163 4 6 1286 222 37 0 0 chr11 91916250 91916277 -29927579 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1286 26 30 0 0 chr11 91916338 91916371 -29927485 + AT_rich Low_complexity Low_complexity 1 33 0 6 1286 201 271 0 0 chr11 91917355 91917403 -29926453 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 6 1286 784 290 0 15 chr11 91917929 91918132 -29925724 - B3 SINE B2 -16 200 1 6 1286 2010 43 12 8 chr11 91918282 91918540 -29925316 - L1Md_F2 LINE L1 -1 6581 6323 6 1286 285 75 0 0 chr11 91918698 91918738 -29925118 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1286 799 338 67 4 chr11 91918759 91919026 -29924830 - B4A SINE B4 -8 284 1 6 1286 338 357 29 0 chr11 91919302 91919442 -29924414 - MLT1A LTR MaLR -230 144 1 6 1286 434 346 0 0 chr11 91919586 91919722 -29924134 + ID_B1 SINE B4 87 222 -2 6 1286 262 181 13 53 chr11 91920079 91920155 -29923701 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 6 1286 24 67 0 0 chr11 91920216 91920261 -29923595 + AT_rich Low_complexity Low_complexity 1 45 0 6 1286 4257 182 16 45 chr11 91920501 91920636 -29923220 + L1Md_F2 LINE L1 401 530 -6194 6 1286 3660 47 0 62 chr11 91920636 91920898 -29922958 - L1Md_F2 LINE L1 -16 6566 6335 6 1286 2575 51 29 0 chr11 91920898 91921214 -29922642 - IAPLTR2b LTR ERVK -2 325 1 6 1286 3660 47 0 62 chr11 91921214 91921454 -29922402 - L1Md_F2 LINE L1 -248 6334 6095 6 1286 31969 91 4 11 chr11 91921454 91926548 -29917308 + L1Md_F2 LINE L1 531 5586 -297 6 1286 7663 57 10 2 chr11 91926549 91927534 -29916322 + L1Md_F2 LINE L1 5588 6580 -2 6 1286 428 106 12 0 chr11 91928268 91928353 -29915503 + (TA)n Simple_repeat Simple_repeat 2 87 0 6 1286 645 207 14 0 chr11 91928361 91928501 -29915355 - Lx9 LINE L1 -184 7460 7319 6 1286 285 188 0 34 chr11 91929063 91929151 -29914705 + GA-rich Low_complexity Low_complexity 3 87 0 6 1286 319 340 13 54 chr11 91929387 91929536 -29914320 + L1MC LINE L1 4749 4891 -1255 6 1286 222 329 29 0 chr11 91929715 91929785 -29914071 + ID4_ SINE ID 2 73 -10 6 1286 486 0 0 0 chr11 91930229 91930283 -29913573 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1286 261 0 0 0 chr11 91930283 91930311 -29913545 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1286 447 19 0 0 chr11 91930311 91930362 -29913494 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 7 1286 438 384 75 86 chr11 91930439 91930791 -29913065 + LTR16E2 LTR ERVL 19 395 -173 7 1286 3922 98 25 5 chr11 91931331 91931884 -29911972 + LTRIS2 LTR ERV1 1 564 0 7 1286 1521 223 25 87 chr11 91931988 91932391 -29911465 - RLTR1B LTR ERV1 0 512 135 7 1286 440 250 34 25 chr11 91932565 91932684 -29911172 + RLTR23 LTR ERV1 311 430 0 7 1286 243 0 0 0 chr11 91932741 91932768 -29911088 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1286 26 30 0 0 chr11 91933299 91933332 -29910524 + AT_rich Low_complexity Low_complexity 1 33 0 7 1286 1106 199 8 68 chr11 91933341 91933605 -29910251 - RMER1B Other Other -23 1043 796 7 1286 495 0 0 0 chr11 91934352 91934407 -29909449 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1286 210 179 26 0 chr11 91934862 91934901 -29908955 + MIRb SINE MIR 159 198 -70 7 1286 3358 258 40 30 chr11 91935418 91935789 -29908067 + Lx7 LINE L1 5630 6012 -1684 7 1286 751 61 18 0 chr11 91935789 91935903 -29907953 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 7 1286 3358 258 40 30 chr11 91935903 91936511 -29907345 + Lx7 LINE L1 6013 6618 -1078 7 1286 4312 115 176 4 chr11 91936513 91936886 -29906970 + RMER17A2 LTR ERVK 1 445 -461 7 1286 465 50 0 0 chr11 91936886 91936946 -29906910 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1286 4312 115 176 4 chr11 91936946 91937322 -29906534 + RMER17A2 LTR ERVK 446 878 -28 7 1286 922 218 0 21 chr11 91937332 91937524 -29906332 + Lx7 LINE L1 6616 6803 -893 7 1286 737 275 107 8 chr11 91937856 91938109 -29905747 + Lx2B LINE L1 6713 6990 -10 7 1286 510 329 7 21 chr11 91939783 91939926 -29903930 + B3A SINE B2 1 141 -57 7 1286 453 36 0 0 chr11 91939932 91939987 -29903869 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1286 228 86 0 0 chr11 91940297 91940332 -29903524 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1286 240 286 0 12 chr11 91940565 91940650 -29903206 + (TGG)n Simple_repeat Simple_repeat 3 86 0 7 1286 234 62 0 0 chr11 91940650 91940682 -29903174 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1286 381 129 0 0 chr11 91941620 91941690 -29902166 + (TA)n Simple_repeat Simple_repeat 1 70 0 7 1286 241 362 0 0 chr11 91942905 91942974 -29900882 + ID4 SINE ID 2 70 -13 7 1286 2049 218 46 61 chr11 91943076 91943776 -29900080 + MYSERV16_I-int LTR ERVK 1042 1730 -596 7 1286 1665 187 48 0 chr11 91943778 91944109 -29899747 + RLTR15 LTR ERVK 10 356 -3 7 1286 2327 145 84 2 chr11 91944181 91944622 -29899234 - Lx4A LINE L1 -994 6064 5588 7 1286 8297 153 23 23 chr11 91944624 91946278 -29897578 + L1_Mur2 LINE L1 3310 4963 -914 7 1286 522 0 0 0 chr11 91946489 91946547 -29897309 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1286 1003 302 81 22 chr11 91947266 91947710 -29896146 + Lx7 LINE L1 6629 7098 -598 7 1286 26 64 0 0 chr11 91948623 91948670 -29895186 + AT_rich Low_complexity Low_complexity 1 47 0 7 1286 22 35 0 0 chr11 91948873 91948902 -29894954 + AT_rich Low_complexity Low_complexity 1 29 0 7 1286 481 345 8 16 chr11 91948940 91949182 -29894674 - Lx8 LINE L1 -826 6647 6408 7 1286 257 0 30 0 chr11 91949464 91949497 -29894359 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1286 343 170 189 11 chr11 91951027 91951122 -29892734 + Lx3B LINE L1 6858 6969 -4 7 1286 22 0 0 0 chr11 91951140 91951162 -29892694 + AT_rich Low_complexity Low_complexity 1 22 0 7 1286 22 0 0 0 chr11 91951473 91951495 -29892361 + AT_rich Low_complexity Low_complexity 1 22 0 7 1286 352 285 192 41 chr11 91952410 91952655 -29891201 + MER2 DNA MER2_type 10 291 -54 7 1286 525 321 96 66 chr11 91952904 91953268 -29890588 + MTEa LTR MaLR 5 379 0 7 1286 1907 194 118 42 chr11 91953443 91953985 -29889871 + RLTR31A_Mm LTR ERVK 1 583 -1 7 1286 397 159 0 0 chr11 91953988 91954051 -29889805 - tRNA-Lys-AAG tRNA tRNA 0 76 14 7 1286 29 28 0 0 chr11 91954245 91954281 -29889575 + AT_rich Low_complexity Low_complexity 1 36 0 7 1286 2885 244 102 93 chr11 91954283 91955442 -29888414 - Lx9 LINE L1 -8 7636 6440 7 1286 7239 25 0 0 chr11 91955442 91956277 -29887579 + L1Md_A LINE L1 5747 6581 -1 7 1286 2885 244 102 93 chr11 91956277 91956433 -29887423 - Lx9 LINE L1 -1205 6439 6309 7 1286 479 17 17 0 chr11 91956826 91956886 -29886970 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1286 2521 106 148 18 chr11 91957293 91957746 -29886110 - L1_Mus3 LINE L1 -13 6625 6114 7 1286 4111 57 4 0 chr11 91957748 91958334 -29885522 + L1_Mus3 LINE L1 5542 6129 -437 7 1286 865 342 20 54 chr11 91958405 91958757 -29885099 + ORR1E LTR MaLR 3 342 -17 7 1286 4394 147 21 37 chr11 91958932 91959750 -29884106 - Lx2 LINE L1 0 6997 6193 7 1286 609 14 0 0 chr11 91959810 91959880 -29883976 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7 1286 802 88 0 34 chr11 91959883 91960000 -29883856 - B1_Mus1 SINE Alu 0 148 36 7 1286 3105 14 0 44 chr11 91960355 91960739 -29883117 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1286 52852 22 17 7 chr11 91960739 91967148 -29876708 + IAPEz-int LTR ERVK 8 6481 0 7 1286 3105 14 0 44 chr11 91967148 91967532 -29876324 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1286 5705 18 0 0 chr11 91967869 91968554 -29875302 + L1Md_T LINE L1 4902 5586 -297 7 1286 8131 51 0 0 chr11 91968554 91969548 -29874308 + L1Md_T LINE L1 5587 6580 -2 7 1286 369 0 0 0 chr11 91969806 91969847 -29874009 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1286 356 361 53 40 chr11 91970694 91970844 -29873012 - ID_B1 SINE B4 -70 154 3 7 1286 306 0 0 0 chr11 91971012 91971046 -29872810 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1286 692 269 81 0 chr11 91971072 91971295 -29872561 - Lx3C LINE L1 -2 6974 6734 7 1286 189 94 0 0 chr11 91971295 91971327 -29872529 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1286 209 128 0 25 chr11 91972570 91972610 -29871246 + T-rich Low_complexity Low_complexity 2 40 0 7 1286 841 241 53 67 chr11 91972612 91972986 -29870870 - RLTR11B LTR ERVK -62 379 1 7 1286 251 257 92 49 chr11 91973047 91973231 -29870625 + L1MD LINE L1 5304 5495 -2500 7 1286 2070 160 8 18 chr11 91973427 91973821 -29870035 - Lx4A LINE L1 -684 6374 5985 7 1286 505 59 9 47 chr11 91974444 91974551 -29869305 + (TTTTG)n Simple_repeat Simple_repeat 3 105 0 7 1286 635 0 13 0 chr11 91974620 91974695 -29869161 + (TTC)n Simple_repeat Simple_repeat 2 77 0 7 1286 1206 102 0 0 chr11 91974695 91974871 -29868985 + (TCC)n Simple_repeat Simple_repeat 3 178 0 7 1286 227 189 49 86 chr11 91975685 91975766 -29868090 + MTE2a LTR MaLR 278 355 -24 7 1286 306 318 29 8 chr11 91976421 91976546 -29867310 + ID_B1 SINE B4 12 141 -151 7 1286 293 286 176 0 chr11 91976499 91976618 -29867238 + B1F SINE Alu 10 149 0 7 1286 29 28 0 0 chr11 91976618 91976654 -29867202 + AT_rich Low_complexity Low_complexity 1 36 0 7 1286 591 27 0 0 chr11 91977172 91977245 -29866611 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1286 308 53 0 0 chr11 91977252 91977290 -29866566 - HAL1-3A_ME LINE L1 -853 2005 1968 7 1286 374 75 19 0 chr11 91977295 91977348 -29866508 - HAL1-3A_ME LINE L1 -824 2034 1981 7 1286 310 244 11 128 chr11 91977348 91977442 -29866414 - RSINE1 SINE B4 0 165 83 7 1286 253 228 21 11 chr11 91978227 91978320 -29865536 - L1MA7 LINE L1 -7 6284 6191 7 1286 276 243 0 0 chr11 91978676 91978750 -29865106 + (TATG)n Simple_repeat Simple_repeat 3 76 0 7 1286 483 245 106 81 chr11 91978948 91979273 -29864583 + L1M3 LINE L1 4813 5157 -983 7 1286 306 0 0 0 chr11 91979273 91979307 -29864549 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1286 483 245 106 81 chr11 91979307 91979376 -29864480 + L1M3 LINE L1 5158 5217 -923 7 1286 3035 119 10 23 chr11 91979426 91979696 -29864160 - Lx3_Mus LINE L1 -11 6998 6735 7 1286 4823 125 21 11 chr11 91979696 91980497 -29863359 - RMER17D2 LTR ERVK 0 809 1 7 1286 3035 119 10 23 chr11 91980497 91980708 -29863148 - Lx3_Mus LINE L1 -275 6734 6523 7 1286 1434 120 8 17 chr11 91980703 91980941 -29862915 - L1_Mus3 LINE L1 -6 6632 6397 7 1286 3138 77 63 2 chr11 91980941 91981400 -29862456 + L1_Mus3 LINE L1 5936 6422 -216 7 1286 5808 115 13 16 chr11 91981398 91981659 -29862197 - Lx3_Mus LINE L1 -472 6537 6286 7 1286 3341 43 0 2 chr11 91981659 91982056 -29861800 + MTA_Mm LTR MaLR 1 396 0 7 1286 5808 115 13 16 chr11 91982056 91982748 -29861108 - Lx3_Mus LINE L1 -724 6285 5587 7 1286 580 99 0 0 chr11 91982754 91982835 -29861021 + Lx3_Mus LINE L1 5502 5582 -304 7 1286 544 342 86 5 chr11 91983068 91983265 -29860591 - ID_B1 SINE B4 -4 220 8 7 1286 489 385 12 53 chr11 91983719 91983889 -29859967 + RSINE1 SINE B4 3 165 0 7 1286 341 238 7 0 chr11 91983890 91984033 -29859823 + GA-rich Low_complexity Low_complexity 2 145 0 7 1286 288 0 0 0 chr11 91984034 91984066 -29859790 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1286 249 403 68 6 chr11 91984109 91984286 -29859570 + B3A SINE B2 5 192 -6 7 1286 423 343 82 0 chr11 91984489 91984623 -29859233 - RSINE1 SINE B4 -19 146 2 7 1286 271 286 200 66 chr11 91984645 91985587 -29858269 + BLACKJACK DNA AcHobo 1795 2862 -82 7 1286 351 0 0 0 chr11 91985624 91985663 -29858193 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1286 213 205 0 0 chr11 91985676 91985715 -29858141 + GA-rich Low_complexity Low_complexity 1 39 0 7 1286 305 148 19 0 chr11 91986078 91986132 -29857724 + HAL1-3A_ME LINE L1 1976 2030 -828 7 1286 29 0 0 0 chr11 91986533 91986562 -29857294 + AT_rich Low_complexity Low_complexity 1 29 0 7 1286 256 24 0 47 chr11 91986957 91987000 -29856856 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 7 1286 735 121 63 77 chr11 91987000 91987137 -29856719 - B1_Mur3 SINE Alu -13 136 1 7 1286 490 309 67 25 chr11 91988648 91989105 -29854751 + L1MC2 LINE L1 4443 4933 -1213 7 1286 214 296 0 24 chr11 91989113 91989196 -29854660 + GA-rich Low_complexity Low_complexity 4 84 0 7 1286 338 352 9 0 chr11 91989295 91989400 -29854456 + B3A SINE B2 5 110 -88 7 1286 3070 39 12 47 chr11 91989751 91990155 -29853701 - RLTR10 LTR ERVK 0 390 1 7 1286 8356 21 2 0 chr11 91990157 91991150 -29852706 - RLTR10-int LTR ERVK -3 1984 990 7 1286 7152 35 11 4 chr11 91991244 91992151 -29851705 - RLTR10-int LTR ERVK -1034 953 41 7 1286 3050 39 12 47 chr11 91992163 91992565 -29851291 - RLTR10 LTR ERVK -2 388 1 7 1286 238 244 39 0 chr11 91992767 91992845 -29851011 + L1MC2 LINE L1 5656 5736 -597 7 1286 369 332 47 14 chr11 91992940 91993154 -29850702 + L1MC2 LINE L1 5858 6078 -266 7 1286 569 297 41 10 chr11 91993275 91993469 -29850387 - B3 SINE B2 -16 200 1 7 1286 907 280 53 70 chr11 91993469 91993826 -29850030 + ORR1D2 LTR MaLR 1 351 -19 7 1286 901 44 0 0 chr11 91993884 91993997 -29849859 + L1Md_F2 LINE L1 5474 5586 -297 7 1286 8017 47 3 4 chr11 91993997 91994994 -29848862 + L1Md_F2 LINE L1 5587 6582 0 7 1286 956 181 0 0 chr11 91995466 91995626 -29848230 + B2_Mm2 SINE B2 5 164 -31 8 1286 701 122 0 7 chr11 91995728 91995876 -29847980 + (GGGA)n Simple_repeat Simple_repeat 4 150 0 8 1286 259 345 26 60 chr11 91996019 91996136 -29847720 - B4A SINE B4 -179 113 1 8 1286 327 328 50 50 chr11 91996243 91996384 -29847472 - B1F1 SINE Alu -8 141 1 8 1286 216 0 0 0 chr11 91998299 91998323 -29845533 + (TTG)n Simple_repeat Simple_repeat 1 24 0 8 1286 1090 54 7 0 chr11 91998340 91998487 -29845369 - L1Md_F2 LINE L1 0 6582 6435 8 1286 264 59 0 0 chr11 91999398 91999432 -29844424 + (TATG)n Simple_repeat Simple_repeat 3 36 0 8 1286 335 21 0 41 chr11 91999951 92000000 -29843856 + (CAGAGA)n Simple_repeat Simple_repeat 3 49 0 8 1286 509 199 7 0 chr11 92000000 92000146 -29843710 + GA-rich Low_complexity Low_complexity 2 148 0 1 1286 183 152 0 0 chr11 92000273 92000319 -29843537 + A-rich Low_complexity Low_complexity 1 46 0 2 1286 384 68 41 0 chr11 92000626 92000699 -29843157 + (TTTTTG)n Simple_repeat Simple_repeat 2 77 0 3 1286 227 294 29 14 chr11 92001547 92001616 -29842240 + LTR33 LTR ERVL 30 99 -416 4 1286 7198 194 33 19 chr11 92002618 92002767 -29841089 + Lx5 LINE L1 5596 5745 -1305 5 1286 3007 77 10 2 chr11 92002767 92003160 -29840696 + MTA_Mm LTR MaLR 1 396 0 6 1286 7198 194 33 19 chr11 92003160 92004446 -29839410 + Lx5 LINE L1 5746 7050 0 5 1286 234 81 0 0 chr11 92004497 92004534 -29839322 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1286 226 191 0 0 chr11 92004580 92004622 -29839234 - Lx LINE L1 -370 6284 6243 8 1286 680 126 0 8 chr11 92004622 92004742 -29839114 + Lx LINE L1 6528 6646 -8 9 1286 538 361 18 88 chr11 92004828 92005171 -29838685 - ORR1E LTR MaLR -23 336 18 1 1286 459 52 0 0 chr11 92006145 92006203 -29837653 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1286 1623 196 48 39 chr11 92006460 92006510 -29837346 - ORR1B2 LTR MaLR -8 359 299 1 1286 459 0 0 0 chr11 92006510 92006561 -29837295 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1286 1623 196 48 39 chr11 92006561 92006866 -29836990 - ORR1B2 LTR MaLR -69 298 1 1 1286 237 400 51 47 chr11 92007081 92007296 -29836560 - MIR SINE MIR -30 232 17 1 1286 985 314 78 42 chr11 92008042 92008103 -29835753 - Lx9 LINE L1 -149 7495 7422 1 1286 225 0 0 0 chr11 92008103 92008128 -29835728 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1286 985 314 78 42 chr11 92008128 92008679 -29835177 - Lx9 LINE L1 -223 7421 6863 1 1286 419 375 7 0 chr11 92008708 92008852 -29835004 + MLT1F2 LTR MaLR 6 150 -410 1 1286 518 55 27 0 chr11 92008852 92008925 -29834931 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1 1286 1860 120 4 0 chr11 92008925 92009200 -29834656 - ORR1A2 LTR MaLR -51 276 1 1 1286 10111 137 69 23 chr11 92009200 92011077 -29832779 - ORR1A2-int LTR MaLR 0 1963 1 1 1286 1244 101 47 5 chr11 92011081 92011271 -29832585 - ORR1A2 LTR MaLR -8 319 122 1 1286 245 305 179 0 chr11 92011342 92011437 -29832419 + MLT1F2 LTR MaLR 182 293 -255 1 1287 365 291 3 2 chr11 92015818 92015912 -29827944 - PB1D7 SINE Alu -48 101 7 2 1287 241 282 0 148 chr11 92015832 92015940 -29827916 - MT2B2 LTR ERVL -343 241 150 2 1287 591 279 182 9 chr11 92016625 92016856 -29827000 - B4A SINE B4 -21 271 1 2 1287 630 71 0 0 chr11 92016882 92016967 -29826889 - B1_Mus2 SINE Alu -62 85 1 2 1287 23 33 0 0 chr11 92017044 92017074 -29826782 + AT_rich Low_complexity Low_complexity 1 30 0 2 1287 515 264 0 8 chr11 92017107 92017229 -29826627 - B3A SINE B2 -77 121 1 2 1287 488 252 102 8 chr11 92017470 92017598 -29826258 + RSINE1 SINE B4 2 141 -24 2 1287 1028 195 27 23 chr11 92017658 92017878 -29825978 - Lx4A LINE L1 -13 7045 6825 2 1287 895 76 14 7 chr11 92019299 92019445 -29824411 + L1_Mus3 LINE L1 6492 6638 0 2 1287 189 0 0 0 chr11 92020653 92020674 -29823182 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 2 1287 258 105 0 0 chr11 92020722 92020760 -29823096 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1287 1698 234 111 9 chr11 92021427 92021876 -29821980 + Lx2B LINE L1 6501 6995 -5 3 1287 180 0 0 0 chr11 92022214 92022234 -29821622 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1287 495 0 0 0 chr11 92022455 92022510 -29821346 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1287 4648 39 7 10 chr11 92022607 92023207 -29820649 + L1Md_F3 LINE L1 6009 6584 0 3 1287 930 298 12 11 chr11 92023271 92023637 -29820219 + Lx7 LINE L1 5638 5995 -1478 3 1287 4025 189 81 20 chr11 92023808 92024646 -29819210 + RMER19B LTR ERVK 2 890 -12 3 1287 392 148 0 0 chr11 92025501 92025562 -29818294 + MTC LTR MaLR 3 63 -358 3 1287 358 285 97 8 chr11 92025576 92025700 -29818156 + Lx6 LINE L1 7309 7443 -17 3 1287 389 20 20 0 chr11 92025703 92025753 -29818103 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1287 1892 185 18 3 chr11 92025753 92026083 -29817773 + MTC LTR MaLR 73 407 -14 3 1287 2617 193 59 85 chr11 92026093 92026322 -29817534 + MTC-int LTR MaLR 6 222 -1036 3 1287 836 69 9 0 chr11 92026322 92026438 -29817418 + (TG)n Simple_repeat Simple_repeat 1 117 0 4 1287 2617 193 59 85 chr11 92026438 92026587 -29817269 + MTC-int LTR MaLR 223 392 -866 3 1287 1367 95 5 0 chr11 92026587 92026776 -29817080 + B2_Mm1a SINE B2 2 191 -2 4 1287 2617 193 59 85 chr11 92026776 92027057 -29816799 + MTC-int LTR MaLR 393 648 -610 3 1287 191 213 0 41 chr11 92027234 92027283 -29816573 + L2 LINE L2 1469 1515 -1904 4 1287 1114 75 0 13 chr11 92027606 92027755 -29816101 - B1_Mus1 SINE Alu -1 147 1 4 1287 29 70 0 0 chr11 92028063 92028120 -29815736 + AT_rich Low_complexity Low_complexity 1 57 0 4 1287 315 349 74 20 chr11 92028226 92028428 -29815428 - L1MEf LINE L1 -5339 861 649 4 1287 4097 103 62 3 chr11 92028757 92029371 -29814485 - L1_Mus3 LINE L1 0 6638 5989 4 1287 296 62 4 0 chr11 92029371 92029415 -29814441 - L1_Mus3 LINE L1 -1081 5919 5875 4 1287 558 186 26 9 chr11 92029680 92029794 -29814062 - ORR1D1 LTR MaLR -258 116 1 4 1287 461 294 33 97 chr11 92029799 92030123 -29813733 - L1_Rod LINE L1 -798 5082 4772 4 1287 503 261 144 6 chr11 92030206 92030387 -29813469 - B3 SINE B2 -9 207 2 4 1287 760 179 12 4 chr11 92030442 92030702 -29813154 + CT-rich Low_complexity Low_complexity 1 262 0 5 1287 548 150 51 34 chr11 92031256 92031373 -29812483 - L1Md_F3 LINE L1 0 6584 6466 5 1287 651 324 96 43 chr11 92032217 92032656 -29811200 + MLT2B4 LTR ERVL 14 475 -81 5 1287 11213 121 69 67 chr11 92032683 92034387 -29809469 + L1VL4 LINE L1 194 1721 -1838 5 1287 8353 14 0 0 chr11 92034387 92035334 -29808522 + L1Md_A LINE L1 5636 6582 0 5 1287 11213 93 106 87 chr11 92035334 92036492 -29807364 + L1VL4 LINE L1 1722 3078 -481 5 1287 3627 118 0 4 chr11 92036483 92037050 -29806806 + Lx LINE L1 5538 6107 -547 5 1287 1336 151 30 4 chr11 92037050 92037283 -29806573 + Lx LINE L1 6410 6648 -6 5 1287 27 49 0 0 chr11 92037369 92037410 -29806446 + AT_rich Low_complexity Low_complexity 1 41 0 5 1287 22 35 0 0 chr11 92037564 92037593 -29806263 + AT_rich Low_complexity Low_complexity 1 29 0 5 1287 292 330 54 68 chr11 92037604 92037972 -29805884 + Lx8 LINE L1 5715 6077 -1396 5 1287 2155 106 78 6 chr11 92037988 92038321 -29805535 + IAPEY2_LTR LTR ERVK 1 357 0 5 1287 2511 146 33 22 chr11 92038321 92038770 -29805086 + IAPEy-int LTR ERVK 1 454 -7059 5 1287 905 155 243 28 chr11 92039177 92039591 -29804265 + IAPEy-int LTR ERVK 409 952 -6629 5 1287 1573 175 102 83 chr11 92039703 92040204 -29803652 + RMER16-int LTR ERVK 251 668 -5469 6 1287 464 230 88 0 chr11 92040207 92040320 -29803536 + RMER16-int LTR ERVK 938 1060 -5077 6 1287 261 291 0 55 chr11 92040333 92040424 -29803432 + IAPEy-int LTR ERVK 2454 2539 -4867 6 1287 665 193 0 0 chr11 92040436 92040555 -29803301 + IAPEy-int LTR ERVK 2635 2753 -4653 6 1287 419 89 0 0 chr11 92040581 92040637 -29803219 + IAPEy-int LTR ERVK 3567 3622 -3784 6 1287 589 88 46 64 chr11 92040636 92040745 -29803111 + IAPEy-int LTR ERVK 4567 4673 -2908 6 1287 3327 91 0 16 chr11 92040997 92041444 -29802412 + IAPEy-int LTR ERVK 5203 5642 -1939 6 1287 3585 70 0 2 chr11 92041435 92041891 -29801965 + IAPEy-int LTR ERVK 5761 6215 -1366 6 1287 5500 82 7 8 chr11 92041880 92042642 -29801214 + IAPEy-int LTR ERVK 6735 7495 -18 6 1287 420 343 67 43 chr11 92042642 92042660 -29801196 + Lx8 LINE L1 6741 6755 -705 6 1287 2122 122 25 36 chr11 92042660 92043018 -29800838 + IAPEY2_LTR LTR ERVK 1 354 -3 6 1287 730 331 66 53 chr11 92043018 92043510 -29800346 + Lx8 LINE L1 6756 7278 -195 6 1287 288 0 0 0 chr11 92044488 92044520 -29799336 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 6 1287 7700 50 3 2 chr11 92045316 92046270 -29797586 + L1Md_F2 LINE L1 5616 6570 -12 6 1287 3546 176 51 12 chr11 92046481 92047147 -29796709 + RLTR17 LTR ERVK 1 692 0 6 1287 21 0 0 0 chr11 92047595 92047616 -29796240 + AT_rich Low_complexity Low_complexity 1 21 0 6 1287 1118 135 0 0 chr11 92047624 92047794 -29796062 + Lx LINE L1 6363 6532 -122 6 1287 441 0 0 0 chr11 92047800 92047849 -29796007 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1287 812 161 19 0 chr11 92048048 92048210 -29795646 - Lx LINE L1 -2 6652 6488 7 1287 2407 134 3 8 chr11 92048210 92048586 -29795270 - Lx2 LINE L1 -329 6668 6295 7 1287 1295 38 0 0 chr11 92048793 92048952 -29794904 + B2_Mm1t SINE B2 2 160 -33 7 1287 186 43 0 0 chr11 92048952 92048975 -29794881 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1287 372 189 0 0 chr11 92049123 92049197 -29794659 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1287 381 296 0 30 chr11 92050364 92050465 -29793391 - B1F SINE Alu -6 143 46 7 1287 308 321 34 59 chr11 92050929 92051048 -29792808 - PB1D7 SINE Alu 0 120 5 7 1287 457 230 161 19 chr11 92052231 92052386 -29791470 - MTD LTR MaLR 0 419 243 7 1287 2405 166 61 2 chr11 92052390 92052818 -29791038 + Lx3C LINE L1 6464 6916 -60 7 1287 767 309 36 9 chr11 92052827 92053052 -29790804 - MTD LTR MaLR -188 231 1 7 1287 183 80 0 0 chr11 92053160 92053185 -29790671 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 7 1287 234 0 0 0 chr11 92053979 92054005 -29789851 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 8 1287 698 305 93 45 chr11 92054005 92054290 -29789566 - MTD LTR MaLR -117 283 1 8 1287 6311 95 36 2 chr11 92055121 92056024 -29787832 - L1_Mus3 LINE L1 -9 6629 5696 8 1287 1287 129 0 15 chr11 92056024 92056221 -29787635 + L1_Mus3 LINE L1 5488 5681 -202 8 1287 243 88 0 0 chr11 92056286 92056320 -29787536 + (TTG)n Simple_repeat Simple_repeat 2 35 0 8 1287 531 289 23 0 chr11 92056320 92056448 -29787408 - B1_Mur3 SINE Alu -11 138 8 8 1287 488 319 46 39 chr11 92057476 92057760 -29786096 + B4 SINE B4 1 286 -6 8 1287 254 361 0 9 chr11 92057766 92057915 -29785941 + (CA)n Simple_repeat Simple_repeat 1 147 0 8 1287 201 154 0 0 chr11 92058113 92058152 -29785704 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1287 470 267 0 16 chr11 92058160 92058282 -29785574 - PB1D7 SINE Alu 0 120 1 8 1287 445 324 66 71 chr11 92059956 92060139 -29783717 + B3A SINE B2 1 182 -16 8 1287 454 214 10 0 chr11 92060650 92060748 -29783108 + Lx4B LINE L1 4673 4771 -1106 9 1287 2763 193 140 26 chr11 92060737 92060881 -29782975 + Lx4B LINE L1 5097 5233 -644 9 1287 3054 241 94 53 chr11 92060881 92061749 -29782107 + RMER13B LTR ERVK 5 908 0 9 1287 2763 194 111 19 chr11 92061749 92062583 -29781273 + Lx4B LINE L1 5234 6172 -886 9 1287 191 36 0 35 chr11 92063140 92063169 -29780687 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 9 1287 5745 111 74 3 chr11 92063173 92064077 -29779779 - Lx3_Mus LINE L1 -19 6990 6023 9 1287 5637 83 10 15 chr11 92064077 92064999 -29778857 + Lx3_Mus LINE L1 5109 6028 -981 9 1287 259 282 62 78 chr11 92065177 92065369 -29778487 - L1M5 LINE L1 -480 5684 5496 9 1287 780 133 0 0 chr11 92065420 92065452 -29778404 + (TC)n Simple_repeat Simple_repeat 1 32 0 9 1287 408 20 0 0 chr11 92065452 92065501 -29778355 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1287 780 133 0 0 chr11 92065501 92065618 -29778238 + (TC)n Simple_repeat Simple_repeat 2 118 0 9 1287 301 176 0 26 chr11 92066026 92066102 -29777754 + CT-rich Low_complexity Low_complexity 4 77 0 9 1287 585 218 120 8 chr11 92066332 92066457 -29777399 - B1_Mur1 SINE Alu -1 148 10 9 1287 451 263 86 43 chr11 92066457 92066471 -29777385 - ID_B1 SINE B4 0 224 80 1 1287 267 318 101 7 chr11 92066801 92066950 -29776906 - MER106B DNA MER1_type -1 1058 896 1 1287 2636 78 73 3 chr11 92067181 92067553 -29776303 - MTB LTR MaLR -2 398 1 1 1287 23 33 0 0 chr11 92068009 92068039 -29775817 + AT_rich Low_complexity Low_complexity 1 30 0 1 1287 360 295 0 0 chr11 92068041 92068136 -29775720 - Lx9 LINE L1 -707 6937 6843 1 1287 2602 234 15 45 chr11 92068158 92068886 -29774970 + Lx9 LINE L1 6939 7644 0 1 1287 276 216 44 18 chr11 92068899 92069012 -29774844 + (TTATA)n Simple_repeat Simple_repeat 4 119 0 1 1287 1160 135 5 5 chr11 92069052 92069260 -29774596 - Lx LINE L1 -7 6647 6440 1 1287 23 68 0 0 chr11 92069263 92069307 -29774549 + AT_rich Low_complexity Low_complexity 1 44 0 1 1287 299 167 63 40 chr11 92069315 92069490 -29774366 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1287 247 229 42 54 chr11 92069529 92069695 -29774161 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 1 1287 270 230 14 0 chr11 92070023 92070097 -29773759 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1287 232 303 70 26 chr11 92070780 92070936 -29772920 - L1MEf LINE L1 -3659 3675 3513 1 1287 347 306 127 44 chr11 92070940 92071403 -29772453 - L1MEf LINE L1 -4025 3062 2564 1 1287 1175 92 11 0 chr11 92071453 92071627 -29772229 + (GGGAGA)n Simple_repeat Simple_repeat 5 180 0 1 1287 406 312 55 96 chr11 92071630 92071921 -29771935 - B4A SINE B4 -18 274 2 1 1287 608 273 79 11 chr11 92072554 92072732 -29771124 - B3 SINE B2 -25 191 2 1 1287 228 185 0 0 chr11 92072931 92072985 -29770871 + CT-rich Low_complexity Low_complexity 1 54 0 1 1287 471 35 0 0 chr11 92072986 92073043 -29770813 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1287 3720 171 101 4 chr11 92073048 92073760 -29770096 - Lx2 LINE L1 -11 6986 6206 1 1287 188 368 10 31 chr11 92074092 92074190 -29769666 + L2 LINE L2 1238 1333 -2086 1 1287 748 302 48 93 chr11 92074308 92074790 -29769066 - Lx8 LINE L1 -3 7470 7011 1 1287 992 116 36 12 chr11 92074997 92075218 -29768638 + MTA_Mm-int LTR MaLR 933 1258 0 1 1287 2983 74 10 15 chr11 92075234 92075632 -29768224 + MTA_Mm LTR MaLR 1 396 0 1 1287 1034 132 11 17 chr11 92075633 92075810 -29768046 + Lx5 LINE L1 5745 5920 -1130 1 1287 2223 73 3 7 chr11 92075810 92076113 -29767743 + MTA_Mm LTR MaLR 94 395 -1 1 1287 228 77 38 19 chr11 92076477 92076530 -29767326 + (CAAA)n Simple_repeat Simple_repeat 1 54 0 1 1287 23 0 0 0 chr11 92078217 92078240 -29765616 + AT_rich Low_complexity Low_complexity 1 23 0 1 1287 391 114 328 39 chr11 92078242 92078370 -29765486 - Lx3A LINE L1 -8 6973 6809 1 1287 643 304 65 20 chr11 92078773 92079065 -29764791 - MER110A LTR ERV1 -161 307 3 1 1287 969 305 63 3 chr11 92079228 92079527 -29764329 - MLT1B LTR MaLR -1 389 73 1 1287 464 293 14 50 chr11 92081990 92082130 -29761726 + RSINE1 SINE B4 12 146 -19 1 1287 1735 225 14 212 chr11 92082131 92082892 -29760964 - RMER19C LTR ERVK 0 611 1 1 1287 1250 185 88 25 chr11 92083747 92084030 -29759826 + Lx9 LINE L1 7165 7465 -179 1 1287 342 0 0 0 chr11 92084033 92084071 -29759785 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1287 255 329 71 0 chr11 92084221 92084291 -29759565 + ID4_ SINE ID 4 78 -5 1 1287 339 203 0 0 chr11 92084313 92084387 -29759469 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1287 183 373 36 9 chr11 92085434 92085545 -29758311 - MIRb SINE MIR -111 157 44 1 1287 365 302 0 25 chr11 92085610 92085729 -29758127 - PB1D10 SINE Alu 0 117 2 1 1287 489 34 0 0 chr11 92086118 92086177 -29757679 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1287 360 0 0 0 chr11 92086177 92086216 -29757640 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1287 5549 155 16 1 chr11 92086266 92087621 -29756235 - Lx LINE L1 -468 6590 4867 1 1287 2652 122 7 10 chr11 92087628 92088042 -29755814 + Lx LINE L1 6242 6654 0 1 1287 251 28 28 0 chr11 92088858 92088894 -29754962 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1287 243 0 0 0 chr11 92089385 92089412 -29754444 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1287 5335 101 93 7 chr11 92089709 92090543 -29753313 + RMER17A2 LTR ERVK 1 906 0 1 1287 1148 297 60 29 chr11 92090754 92091271 -29752585 - MT2A LTR ERVL 0 533 1 1 1287 192 77 0 0 chr11 92091338 92091364 -29752492 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 1 1287 879 89 5 68 chr11 92092000 92092192 -29751664 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1287 351 135 62 0 chr11 92092860 92092956 -29750900 + (TA)n Simple_repeat Simple_repeat 1 102 0 1 1287 208 85 20 41 chr11 92092983 92093032 -29750824 + (TTAA)n Simple_repeat Simple_repeat 2 49 0 1 1287 898 57 32 0 chr11 92093301 92093425 -29750431 - L1_Mus3 LINE L1 -580 6058 5931 1 1287 3993 76 9 0 chr11 92093425 92093949 -29749907 + L1_Mus3 LINE L1 6098 6626 -12 1 1287 2356 90 9 3 chr11 92094271 92094606 -29749250 - L1_Mus3 LINE L1 -3 6635 6299 1 1287 258 376 34 41 chr11 92096003 92096150 -29747706 + B1F SINE Alu 4 149 0 1 1287 289 184 9 109 chr11 92096283 92096393 -29747463 + Lx7 LINE L1 7270 7368 -328 1 1287 789 307 105 38 chr11 92096384 92097144 -29746712 - L1MA5 LINE L1 -279 6085 5213 1 1287 1109 155 5 5 chr11 92097145 92097333 -29746523 - B2_Mm2 SINE B2 -6 189 2 1 1287 2936 264 146 16 chr11 92097344 92098268 -29745588 - Lx6 LINE L1 -8 7452 6409 1 1287 438 53 0 0 chr11 92098337 92098394 -29745462 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 1 1287 553 314 25 35 chr11 92098394 92098595 -29745261 - B3 SINE B2 -16 200 2 1 1287 238 307 61 78 chr11 92098600 92099154 -29744702 - L1MA5 LINE L1 -1903 4304 3760 1 1287 266 310 14 0 chr11 92099270 92099341 -29744515 - PB1D10 SINE Alu -6 111 40 1 1287 198 109 35 35 chr11 92099476 92099533 -29744323 + T-rich Low_complexity Low_complexity 4 60 0 1 1287 435 195 0 0 chr11 92099954 92100082 -29743774 + CT-rich Low_complexity Low_complexity 1 128 0 1 1287 290 264 88 65 chr11 92100132 92100347 -29743509 - L1MA5 LINE L1 -4901 1240 1021 1 1287 1212 106 0 0 chr11 92100488 92100667 -29743189 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 1 1287 288 0 0 0 chr11 92100667 92100699 -29743157 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1 1287 447 92 0 0 chr11 92100957 92101022 -29742834 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1287 216 0 0 0 chr11 92101312 92101336 -29742520 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1287 276 328 136 74 chr11 92102172 92102482 -29741374 - L2a LINE L2 0 3426 3098 1 1287 385 355 16 45 chr11 92102987 92103131 -29740725 - Lx8 LINE L1 -6 7467 7330 1 1287 360 64 0 0 chr11 92103131 92103178 -29740678 + (CAT)n Simple_repeat Simple_repeat 1 47 0 1 1287 385 355 16 45 chr11 92103178 92103278 -29740578 - Lx8 LINE L1 -144 7329 7230 1 1287 1529 260 17 19 chr11 92104086 92104506 -29739350 + MTD LTR MaLR 1 419 0 1 1287 2072 136 16 31 chr11 92104635 92104996 -29738860 + RMER17B LTR ERVK 1 348 -558 1 1287 37667 43 0 4 chr11 92104996 92111212 -29732644 - L1Md_T LINE L1 -21 6564 275 1 1287 364 226 18 103 chr11 92111212 92111241 -29732615 + RMER17B LTR ERVK 284 311 -498 1 1287 994 98 0 0 chr11 92111241 92111374 -29732482 - B1_Mm SINE Alu -14 133 1 1 1287 2904 154 39 126 chr11 92111374 92112095 -29731761 + RMER17B LTR ERVK 301 958 0 1 1287 1081 277 69 27 chr11 92112670 92113399 -29730457 + L1MA4 LINE L1 5121 5936 -364 1 1287 239 287 45 11 chr11 92114257 92114345 -29729511 - L1M5 LINE L1 -1146 5000 4910 1 1287 1454 211 51 75 chr11 92114358 92114732 -29729124 + ORR1B2 LTR MaLR 1 365 -2 1 1287 38 81 0 0 chr11 92115152 92115239 -29728617 + AT_rich Low_complexity Low_complexity 1 87 0 1 1287 6092 170 20 4 chr11 92115895 92117004 -29726852 - Lx2B LINE L1 0 7000 5874 1 1287 5072 178 17 8 chr11 92117014 92118010 -29725846 - L1VL4 LINE L1 -806 2753 1749 1 1287 31058 93 20 8 chr11 92118019 92123214 -29720642 + L1Md_F2 LINE L1 327 5586 -297 1 1287 7422 75 4 2 chr11 92123215 92124206 -29719650 + L1Md_F2 LINE L1 5588 6580 -2 1 1287 2505 202 7 13 chr11 92124215 92124822 -29719034 - L1VL4 LINE L1 -1814 1745 1143 1 1287 7112 64 18 3 chr11 92124821 92125752 -29718104 - L1Md_F2 LINE L1 -3 6579 5635 1 1287 1962 177 14 9 chr11 92125737 92126298 -29717558 - L1VL4 LINE L1 -2420 1139 577 1 1287 396 0 0 0 chr11 92127195 92127239 -29716617 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1287 375 41 0 0 chr11 92127239 92127288 -29716568 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1287 234 388 87 28 chr11 92127708 92127953 -29715903 + LTR33A LTR ERVL 76 331 -184 1 1287 1271 136 5 0 chr11 92128997 92129188 -29714668 - ORR1A2 LTR MaLR -135 192 1 1 1287 407 307 85 88 chr11 92129283 92129705 -29714151 - RMER15 LTR ERVL 0 575 3 1 1287 246 395 23 30 chr11 92130060 92130193 -29713663 + ID_B1 SINE B4 79 210 -14 1 1287 1889 296 84 104 chr11 92131092 92132283 -29711573 + Lx5 LINE L1 5878 7044 -6 1 1287 396 340 0 84 chr11 92132327 92132481 -29711375 + B1F SINE Alu 3 143 -6 1 1287 207 0 0 0 chr11 92132982 92133005 -29710851 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1287 204 40 0 0 chr11 92133599 92133624 -29710232 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1 1287 1665 196 3 0 chr11 92133637 92133943 -29709913 - RMER6D LTR ERVK -4 716 410 1 1287 564 15 0 0 chr11 92133950 92134015 -29709841 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1287 2732 104 18 0 chr11 92134016 92134409 -29709447 - MTB LTR MaLR 0 400 1 1 1287 185 0 40 0 chr11 92134450 92134475 -29709381 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1287 261 0 0 0 chr11 92134546 92134575 -29709281 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1287 1558 215 64 48 chr11 92134745 92135259 -29708597 - RMER6D LTR ERVK -249 507 12 1 1287 228 336 65 51 chr11 92135248 92135386 -29708470 + RMER12 LTR ERVK 717 856 -466 1 1287 220 257 0 146 chr11 92135362 92135444 -29708412 - RSINE1 SINE B4 0 165 96 1 1287 235 339 61 18 chr11 92136163 92136277 -29707579 + LTR40b LTR ERVL 123 241 -221 1 1287 396 0 0 0 chr11 92136912 92136956 -29706900 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1287 1508 194 22 35 chr11 92136958 92137352 -29706504 - RLTR11A LTR ERVK -83 445 1 2 1287 374 227 34 0 chr11 92138511 92138599 -29705257 - RMER6D LTR ERVK 0 720 630 2 1287 243 231 50 25 chr11 92138542 92138622 -29705234 + B1_Mus2 SINE Alu 66 147 0 2 1287 1978 175 8 24 chr11 92138657 92139037 -29704819 - RMER6D LTR ERVK -346 374 1 2 1287 1101 110 87 0 chr11 92139043 92139216 -29704640 - RMER6-int LTR ERVK -7 3170 2983 2 1287 237 349 0 0 chr11 92139273 92139339 -29704517 - MTEb LTR MaLR -66 313 248 2 1287 450 0 0 0 chr11 92139519 92139569 -29704287 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1287 362 250 30 0 chr11 92140224 92140324 -29703532 - Lx7 LINE L1 0 7696 7594 2 1287 497 260 42 128 chr11 92140327 92140552 -29703304 - B3A SINE B2 0 195 1 2 1287 319 162 27 13 chr11 92140554 92140629 -29703227 + C-rich Low_complexity Low_complexity 5 80 0 2 1287 915 166 188 0 chr11 92140789 92140843 -29703013 - Lx9 LINE L1 -86 7558 7500 2 1287 432 0 0 0 chr11 92140843 92140891 -29702965 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1287 915 166 188 0 chr11 92140891 92141059 -29702797 - Lx9 LINE L1 -145 7499 7295 2 1287 297 0 0 0 chr11 92142436 92142469 -29701387 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2 1287 3034 245 11 11 chr11 92142478 92143207 -29700649 - Lx2B LINE L1 -121 6879 6022 2 160 3935 166 61 54 chr11 92143200 92144057 -29699799 - L1_Mur2 LINE L1 -189 5688 4826 2 1288 26 0 0 0 chr11 92144518 92144544 -29699312 + AT_rich Low_complexity Low_complexity 1 26 0 2 1288 1573 71 0 0 chr11 92144565 92144775 -29699081 - L1Md_T LINE L1 0 6582 6373 2 1288 1865 126 10 0 chr11 92144780 92145082 -29698774 - L1_Mur2 LINE L1 -1058 4819 4515 2 1288 816 211 42 42 chr11 92145087 92145280 -29698576 - B2_Mm2 SINE B2 0 195 3 2 1288 30 27 0 0 chr11 92145304 92145341 -29698515 + AT_rich Low_complexity Low_complexity 1 37 0 2 1288 902 243 26 5 chr11 92145437 92145627 -29698229 + B3 SINE B2 12 205 -11 2 1288 180 191 44 73 chr11 92145835 92145903 -29697953 - MIRb SINE MIR -69 199 134 2 1288 9004 111 19 18 chr11 92146845 92148346 -29695510 + Lx3A LINE L1 5497 6981 0 2 1288 23 0 0 0 chr11 92149009 92149032 -29694824 + AT_rich Low_complexity Low_complexity 1 23 0 2 1288 229 349 36 12 chr11 92149138 92149222 -29694634 + PB1D7 SINE Alu 18 103 -17 2 1288 2492 87 79 26 chr11 92150119 92150498 -29693358 - L1_Mus1 LINE L1 0 6567 6169 2 1288 459 0 0 0 chr11 92150499 92150550 -29693306 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2 1288 358 304 0 127 chr11 92150716 92150732 -29693124 + ID_B1 SINE B4 74 179 -45 2 1288 711 211 14 63 chr11 92150732 92150838 -29693018 + B1_Mur4 SINE Alu 3 103 -47 2 1288 2990 83 10 0 chr11 92150838 92151233 -29692623 + MTB LTR MaLR 2 400 0 2 1288 358 304 0 127 chr11 92151233 92151268 -29692588 + ID_B1 SINE B4 180 211 -13 2 1288 447 68 0 0 chr11 92151436 92151495 -29692361 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2 1288 279 54 0 0 chr11 92153027 92153064 -29690792 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2 1288 427 292 109 87 chr11 92153816 92154000 -29689856 + B3 SINE B2 3 190 -26 2 1288 189 391 16 0 chr11 92154352 92154416 -29689440 + MIRb SINE MIR 22 86 -182 2 1288 340 242 224 8 chr11 92154417 92154542 -29689314 - RMER15 LTR ERVL 0 575 424 2 1288 661 231 35 67 chr11 92154825 92155080 -29688776 - Lx7 LINE L1 -4 7692 7446 2 1288 280 320 71 10 chr11 92155247 92155345 -29688511 + PB1D7 SINE Alu 17 120 0 2 1288 767 232 7 0 chr11 92155556 92155711 -29688145 - L1_Mur3 LINE L1 -257 5623 5468 2 1288 602 199 0 28 chr11 92155712 92155857 -29687999 + Lx6 LINE L1 7319 7459 -1 2 1288 1830 214 12 63 chr11 92157440 92157850 -29686006 + ORR1B1 LTR MaLR 1 389 -5 2 1288 5862 230 53 21 chr11 92158151 92159566 -29684290 + Lx7 LINE L1 6234 7693 -3 2 1288 891 194 29 38 chr11 92159969 92160178 -29683678 + MTC LTR MaLR 1 207 -214 2 1288 1377 25 0 0 chr11 92160178 92160337 -29683519 + L1Md_T LINE L1 5428 5586 -297 2 1288 8445 32 0 0 chr11 92160337 92161333 -29682523 + L1Md_T LINE L1 5587 6582 0 2 1288 874 218 15 63 chr11 92161346 92161552 -29682304 + MTC LTR MaLR 221 416 -5 2 1288 189 0 0 0 chr11 92161552 92161573 -29682283 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1288 553 296 53 0 chr11 92161808 92161960 -29681896 + ID_B1 SINE B4 12 171 -53 2 1288 711 296 76 5 chr11 92162094 92162291 -29681565 - MER58A DNA MER1_type -8 216 6 2 1288 221 163 20 0 chr11 92162385 92162434 -29681422 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 2 1288 6370 52 2 0 chr11 92162821 92163613 -29680243 + L1Md_F2 LINE L1 5788 6581 -1 2 1288 197 65 32 0 chr11 92163618 92163649 -29680207 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 1288 230 349 54 42 chr11 92165287 92165526 -29678330 + Lx9 LINE L1 7215 7456 -188 2 1288 31 44 0 0 chr11 92165674 92165719 -29678137 + AT_rich Low_complexity Low_complexity 1 45 0 2 1288 417 323 83 89 chr11 92165828 92166178 -29677678 - ORR1E LTR MaLR -11 348 1 2 1288 216 122 0 0 chr11 92166239 92166280 -29677576 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 1288 38 39 0 0 chr11 92166445 92166497 -29677359 + AT_rich Low_complexity Low_complexity 1 52 0 2 1288 499 302 17 50 chr11 92166856 92167037 -29676819 + B4A SINE B4 112 286 -6 2 1288 689 264 28 22 chr11 92167705 92167883 -29675973 + ORR1D1 LTR MaLR 24 202 -172 2 1288 215 31 0 30 chr11 92168529 92168562 -29675294 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1288 226 69 0 0 chr11 92168668 92168697 -29675159 - Lx3_Mus LINE L1 -1290 5719 5691 2 1288 567 376 54 0 chr11 92168708 92168966 -29674890 - Lx8 LINE L1 -149 7324 7053 2 1288 1178 316 40 32 chr11 92169142 92169665 -29674191 - Lx8 LINE L1 -677 6796 6270 2 1288 308 291 12 12 chr11 92169674 92169754 -29674102 - B4 SINE B4 -208 84 5 2 1288 370 315 45 15 chr11 92169902 92170034 -29673822 + B1F1 SINE Alu 10 145 -4 2 1288 292 282 0 2 chr11 92170053 92170128 -29673728 + ID2 SINE ID 11 84 -68 2 1288 3594 191 25 9 chr11 92170741 92171421 -29672435 + Lx5 LINE L1 6360 7050 0 2 1288 252 0 0 0 chr11 92171949 92171977 -29671879 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1288 438 20 0 0 chr11 92172222 92172273 -29671583 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1288 261 0 0 0 chr11 92172675 92172704 -29671152 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1288 556 369 10 0 chr11 92173229 92173435 -29670421 + B4A SINE B4 4 211 -81 2 1288 6379 56 4 6 chr11 92173672 92174485 -29669371 + L1Md_F2 LINE L1 5758 6568 -14 2 1288 22 35 0 0 chr11 92175430 92175459 -29668397 + AT_rich Low_complexity Low_complexity 1 29 0 2 1288 199 136 34 0 chr11 92175598 92175657 -29668199 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 2 1288 1072 109 17 0 chr11 92176037 92176211 -29667645 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 2 1288 313 299 65 65 chr11 92176212 92176366 -29667490 + HAL1-3A_ME LINE L1 2284 2437 -421 2 1288 303 130 0 0 chr11 92177008 92177062 -29666794 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 2 1288 2851 81 7 20 chr11 92177132 92177536 -29666320 - L1_Mus4 LINE L1 -8 6628 6230 2 1288 252 333 0 22 chr11 92178402 92178494 -29665362 + L2a LINE L2 3301 3390 -36 2 1288 245 177 58 92 chr11 92178715 92178802 -29665054 - RSINE1 SINE B4 0 165 82 2 1288 479 340 51 5 chr11 92178983 92179178 -29664678 - B3 SINE B2 -12 204 1 2 1288 4616 61 0 13 chr11 92179195 92179792 -29664064 - L1_Mus1 LINE L1 -1 6566 5978 2 1288 21874 89 5 7 chr11 92179824 92183623 -29660233 + L1Md_F3 LINE L1 422 4210 -1673 2 1288 909 101 8 0 chr11 92183624 92183753 -29660103 - L1_Mur1 LINE L1 -303 5583 5454 2 1288 339 115 0 0 chr11 92183753 92183805 -29660051 + L1_Mur1 LINE L1 5218 5269 -617 2 1288 3143 50 0 0 chr11 92183806 92184190 -29659666 + L1Md_F3 LINE L1 5203 5586 -297 2 1288 7931 52 5 0 chr11 92184191 92185171 -29658685 + L1Md_F3 LINE L1 5588 6572 -12 2 1288 2325 78 9 3 chr11 92185523 92185859 -29657997 + L1_Mm LINE L1 2792 3129 -2754 2 1288 4091 126 107 28 chr11 92186950 92187700 -29656156 - RMER17D2 LTR ERVK 0 809 1 2 1288 303 205 18 9 chr11 92187943 92188009 -29655847 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1288 837 30 0 0 chr11 92188009 92188109 -29655747 + (TA)n Simple_repeat Simple_repeat 2 101 0 2 1288 303 205 18 9 chr11 92188109 92188155 -29655701 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1288 1124 88 0 0 chr11 92188190 92188338 -29655518 - B1_Mus1 SINE Alu 0 148 1 2 1288 297 0 0 0 chr11 92188951 92188984 -29654872 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1288 2192 111 29 0 chr11 92189425 92189741 -29654115 + ORR1A2 LTR MaLR 1 325 -2 2 1288 270 315 92 16 chr11 92190473 92190657 -29653199 + L1ME2z LINE L1 5911 6108 -336 2 1288 409 330 100 0 chr11 92191107 92191307 -29652549 + Lx8 LINE L1 6769 6988 -485 2 1288 369 0 0 0 chr11 92191384 92191425 -29652431 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1288 314 310 215 14 chr11 92191654 92192089 -29651767 + Lx9 LINE L1 7097 7619 -25 2 1288 340 337 66 35 chr11 92192475 92192785 -29651071 + L1MC4a LINE L1 7475 7818 -224 2 1288 5083 66 1 0 chr11 92193603 92194251 -29649605 - L1Md_F2 LINE L1 -17 6565 5917 2 1288 1260 212 6 45 chr11 92194510 92194866 -29648990 + MusHAL1 LINE L1 1893 2234 -478 2 1288 11003 169 27 15 chr11 92194867 92195883 -29647973 + Lx2B LINE L1 3691 4725 -1152 2 1288 246 32 0 0 chr11 92195883 92195914 -29647942 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1288 11003 191 26 30 chr11 92195914 92198052 -29645804 + Lx2B LINE L1 4726 6846 -154 2 1288 531 275 24 81 chr11 92198152 92198362 -29645494 + B3A SINE B2 1 198 0 2 1288 1772 152 71 0 chr11 92200579 92200902 -29642954 - ORR1B1 LTR MaLR -2 392 47 2 1288 369 357 14 7 chr11 92201044 92201185 -29642671 - ORR1E LTR MaLR -200 159 18 2 1288 3791 158 53 3 chr11 92201229 92201891 -29641965 - Lx4A LINE L1 -20 7038 6344 2 1288 261 253 43 124 chr11 92202129 92202314 -29641542 + MLT1D LTR MaLR 12 181 -324 2 1288 219 69 0 0 chr11 92202376 92202405 -29641451 + (GGA)n Simple_repeat Simple_repeat 2 30 0 3 1288 2138 101 6 12 chr11 92202625 92202945 -29640911 - Lx LINE L1 -741 5913 5596 3 1288 4995 119 5 3 chr11 92202945 92203684 -29640172 + Lx LINE L1 5912 6652 -2 3 1288 523 253 39 56 chr11 92203914 92204094 -29639762 + MLT1D LTR MaLR 316 492 -13 2 1288 325 259 81 25 chr11 92204105 92204388 -29639468 + L1MD LINE L1 3118 3431 -2715 3 1288 339 25 0 0 chr11 92204985 92205025 -29638831 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1288 2201 321 87 46 chr11 92205027 92205568 -29638288 - Lx8 LINE L1 -148 7325 6752 3 1288 1094 75 7 0 chr11 92205568 92205714 -29638142 + B1_Mus1 SINE Alu 2 148 0 3 1288 2201 321 87 46 chr11 92205714 92206322 -29637534 - Lx8 LINE L1 -722 6751 6129 3 1288 2059 187 49 99 chr11 92206487 92207140 -29636716 + RMER19B LTR ERVK 3 896 -6 3 1288 192 125 0 0 chr11 92207228 92207260 -29636596 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1288 255 312 51 51 chr11 92207838 92207956 -29635900 + B4A SINE B4 6 123 -169 3 1288 303 161 0 0 chr11 92208181 92208237 -29635619 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1288 243 88 0 0 chr11 92209166 92209200 -29634656 + (TTG)n Simple_repeat Simple_repeat 3 36 0 3 1288 180 0 0 0 chr11 92209200 92209220 -29634636 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1288 266 0 29 0 chr11 92210036 92210070 -29633786 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3 1288 388 167 33 0 chr11 92210075 92210165 -29633691 + (CATA)n Simple_repeat Simple_repeat 4 96 0 3 1288 234 333 14 14 chr11 92210177 92210250 -29633606 + ID4 SINE ID 4 76 -7 3 1288 313 255 112 50 chr11 92210366 92210527 -29633329 + L1M4b LINE L1 40 210 -7124 3 1288 234 0 0 0 chr11 92210803 92210829 -29633027 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1288 252 255 102 84 chr11 92211088 92211255 -29632601 + L1M4b LINE L1 1239 1408 -5926 3 1288 398 252 10 29 chr11 92211920 92212022 -29631834 - B4A SINE B4 -10 282 183 3 1288 387 0 0 0 chr11 92212041 92212084 -29631772 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1288 279 0 0 0 chr11 92212084 92212114 -29631742 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1288 218 304 0 0 chr11 92212126 92212172 -29631684 - B4A SINE B4 -220 72 27 3 1288 26 50 0 0 chr11 92212311 92212351 -29631505 + AT_rich Low_complexity Low_complexity 1 40 0 3 1288 546 307 48 12 chr11 92212708 92212876 -29630980 - B3A SINE B2 -24 174 1 3 1288 420 143 0 0 chr11 92213087 92213157 -29630699 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1288 1000 259 112 10 chr11 92213855 92214151 -29629705 + MTD LTR MaLR 80 405 -14 3 1288 627 295 55 0 chr11 92214390 92214590 -29629266 + B3 SINE B2 1 211 -5 3 1288 1178 68 0 0 chr11 92216259 92216407 -29627449 + B1_Mus1 SINE Alu 1 148 0 3 1288 218 106 21 0 chr11 92216407 92216454 -29627402 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1288 396 0 0 0 chr11 92216627 92216671 -29627185 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1288 925 139 0 21 chr11 92216673 92216813 -29627043 - B1_Mus1 SINE Alu -2 146 10 3 1288 325 338 90 84 chr11 92217424 92217579 -29626277 - RSINE1 SINE B4 0 165 10 3 1288 432 272 21 11 chr11 92217964 92218057 -29625799 + RSINE1 SINE B4 64 157 -8 3 1288 895 69 15 8 chr11 92218429 92218561 -29625295 + (GAAA)n Simple_repeat Simple_repeat 2 134 0 3 1288 324 0 0 0 chr11 92219066 92219102 -29624754 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1288 883 94 0 42 chr11 92219494 92219638 -29624218 + L1_Mus2 LINE L1 6427 6564 -2 3 1288 839 266 22 26 chr11 92219669 92219897 -29623959 - MTE2b LTR MaLR -43 336 110 3 1288 200 31 0 59 chr11 92219920 92219954 -29623902 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1288 234 285 122 122 chr11 92220167 92220371 -29623485 - MLT1K LTR MaLR -6 589 386 3 1288 452 387 5 22 chr11 92220454 92220676 -29623180 - MER58A DNA MER1_type 0 224 7 3 1288 301 332 62 83 chr11 92220830 92221139 -29622717 + MTEb LTR MaLR 35 347 -32 3 1288 229 346 0 0 chr11 92221711 92221763 -29622093 - ID4 SINE ID -31 52 1 3 1288 292 311 28 0 chr11 92221780 92221886 -29621970 - PB1D10 SINE Alu -8 109 1 3 1288 828 317 13 107 chr11 92222083 92222114 -29621742 + B4A SINE B4 5 29 -263 3 1288 2486 32 6 19 chr11 92222114 92222428 -29621428 - L1Md_F2 LINE L1 0 6582 6273 3 1288 828 317 13 107 chr11 92222428 92222714 -29621142 + B4A SINE B4 30 292 0 3 1288 294 29 0 0 chr11 92222718 92222753 -29621103 + (CACG)n Simple_repeat Simple_repeat 1 35 0 3 1288 309 244 11 11 chr11 92222763 92222850 -29621006 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1288 303 71 0 0 chr11 92222873 92222915 -29620941 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1288 33 0 0 0 chr11 92223223 92223256 -29620600 + AT_rich Low_complexity Low_complexity 1 33 0 3 1288 1631 74 14 0 chr11 92223290 92223507 -29620349 + L1Md_F2 LINE L1 6350 6569 -13 3 1288 368 334 44 61 chr11 92223700 92224016 -29619840 - ORR1E LTR MaLR -59 311 9 3 1288 547 287 55 74 chr11 92224727 92224983 -29618873 - ORSL DNA Tip100 -24 251 1 3 1288 294 306 58 63 chr11 92225336 92225542 -29618314 - L1M2 LINE L1 -831 5312 5108 3 1288 432 0 0 0 chr11 92227031 92227079 -29616777 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1288 1867 154 101 46 chr11 92227169 92227564 -29616292 - RLTR11A LTR ERVK -109 419 3 3 1288 467 33 16 0 chr11 92228660 92228721 -29615135 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 1288 226 216 0 0 chr11 92228779 92228830 -29615026 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1288 370 82 0 0 chr11 92228830 92228879 -29614977 + HAL1-3A_ME LINE L1 1975 2023 -835 3 1288 206 61 19 58 chr11 92228898 92228950 -29614906 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1288 21 36 0 0 chr11 92229929 92229957 -29613899 + AT_rich Low_complexity Low_complexity 1 28 0 3 1288 474 118 0 0 chr11 92231480 92231573 -29612283 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1288 243 210 0 16 chr11 92231576 92231659 -29612197 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 1288 229 260 40 14 chr11 92231905 92231979 -29611877 + MLT1C LTR MaLR 59 134 -333 3 1288 267 347 41 0 chr11 92232008 92232106 -29611750 - B1_Mm SINE Alu -28 119 18 3 1288 3221 74 2 0 chr11 92232279 92232699 -29611157 - L1_Mus2 LINE L1 -219 5664 5244 3 1288 2693 58 0 0 chr11 92232693 92233040 -29610816 + L1_Mus2 LINE L1 5665 6011 -555 3 1288 692 143 18 0 chr11 92233040 92233152 -29610704 + PB1D9 SINE Alu 1 114 -6 3 1288 2146 185 14 7 chr11 92233152 92233224 -29610632 + Lx2 LINE L1 6012 6087 -910 3 1288 1080 24 0 0 chr11 92233228 92233355 -29610501 + (GGAAA)n Simple_repeat Simple_repeat 4 130 0 3 1288 4132 74 29 4 chr11 92233356 92233912 -29609944 + L1_Mus1 LINE L1 5998 6567 0 3 1288 32 26 0 0 chr11 92233916 92233955 -29609901 + AT_rich Low_complexity Low_complexity 1 39 0 3 1288 348 309 90 39 chr11 92233955 92234110 -29609746 + MLT1C LTR MaLR 303 465 -2 3 1288 559 289 85 10 chr11 92235513 92235712 -29608144 - B3 SINE B2 0 216 3 3 1288 614 250 62 74 chr11 92236257 92236581 -29607275 - Lx7 LINE L1 -7 7689 7370 3 1288 2471 136 32 15 chr11 92238347 92238373 -29605483 - Lx3A LINE L1 -6 6975 6950 3 1288 2004 111 67 15 chr11 92238373 92238702 -29605154 - L1_Mus3 LINE L1 -2 6636 6291 3 1288 2471 136 32 15 chr11 92238702 92239085 -29604771 - Lx3A LINE L1 -32 6949 6560 3 1288 279 0 0 0 chr11 92239101 92239132 -29604724 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1288 378 0 0 0 chr11 92239784 92239826 -29604030 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1288 1459 248 70 55 chr11 92239946 92240402 -29603454 - RMER15 LTR ERVL -86 489 27 3 1288 396 0 0 0 chr11 92241855 92241899 -29601957 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1288 364 316 58 22 chr11 92241907 92242046 -29601810 - RSINE1 SINE B4 -19 146 3 3 1288 498 159 0 0 chr11 92242888 92242976 -29600880 + T-rich Low_complexity Low_complexity 1 88 0 3 1288 678 188 6 12 chr11 92242975 92243137 -29600719 + C-rich Low_complexity Low_complexity 5 165 0 3 1288 772 181 51 0 chr11 92243170 92243308 -29600548 - B1_Mur3 SINE Alu -2 147 3 3 1288 1449 32 21 5 chr11 92244808 92244997 -29598859 - L1Md_F2 LINE L1 -15 6567 6376 3 1288 297 0 0 0 chr11 92245199 92245232 -29598624 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1288 324 0 0 0 chr11 92245232 92245267 -29598589 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1288 809 87 0 16 chr11 92245731 92245860 -29597996 + (GAAA)n Simple_repeat Simple_repeat 4 130 0 3 1288 345 260 19 74 chr11 92245860 92245960 -29597896 - ID_B1 SINE B4 -18 206 111 3 1288 450 36 0 0 chr11 92245965 92246021 -29597835 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1288 792 305 19 9 chr11 92246159 92246371 -29597485 - B3 SINE B2 -1 215 2 3 1288 628 199 5 5 chr11 92247006 92247227 -29596629 + (TA)n Simple_repeat Simple_repeat 1 221 0 3 1288 1091 321 15 12 chr11 92247308 92247709 -29596147 + Lx8 LINE L1 6354 6755 -718 3 1288 340 216 0 40 chr11 92248374 92248475 -29595381 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1288 219 235 0 0 chr11 92248488 92248539 -29595317 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 3 1288 252 351 58 110 chr11 92248630 92248803 -29595053 - B4 SINE B4 -75 217 54 3 1288 25 65 0 0 chr11 92248822 92248868 -29594988 + AT_rich Low_complexity Low_complexity 1 46 0 3 1288 31 0 0 0 chr11 92249025 92249056 -29594800 + AT_rich Low_complexity Low_complexity 1 31 0 3 1288 2967 51 2 69 chr11 92249056 92249474 -29594382 - RLTR10 LTR ERVK 0 390 1 3 1288 915 319 30 62 chr11 92249642 92250013 -29593843 + ORR1E LTR MaLR 1 359 0 3 1288 1814 180 26 6 chr11 92250736 92251077 -29592779 + L1_Mur2 LINE L1 4829 5176 -701 3 1288 348 24 0 0 chr11 92251295 92251336 -29592520 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1288 468 0 0 0 chr11 92251336 92251387 -29592469 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1288 549 44 0 0 chr11 92251997 92252065 -29591791 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 1288 3336 136 6 6 chr11 92252791 92253338 -29590518 + Lx2 LINE L1 6451 6997 0 3 1288 200 344 63 81 chr11 92253451 92253625 -29590231 + L3 LINE CR1 3533 3703 -786 4 1288 354 370 66 6 chr11 92253637 92253819 -29590037 + L3 LINE CR1 3781 3973 -516 4 1288 369 218 23 0 chr11 92254049 92254136 -29589720 + L1MA8 LINE L1 5681 5769 -531 4 1288 570 312 47 52 chr11 92254254 92254656 -29589200 + L1MA8 LINE L1 5758 6157 -134 4 1288 1085 68 0 0 chr11 92254783 92254916 -29588940 + B1_Mus2 SINE Alu 2 134 -13 4 1288 543 56 0 0 chr11 92254917 92254988 -29588868 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 4 1288 307 89 18 18 chr11 92255256 92255313 -29588543 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1288 360 0 0 0 chr11 92255313 92255352 -29588504 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1288 413 105 0 26 chr11 92255363 92255441 -29588415 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 4 1288 2499 95 47 11 chr11 92255495 92255877 -29587979 - MTB LTR MaLR -4 396 1 4 1288 746 327 81 9 chr11 92255877 92256222 -29587634 - Lx9 LINE L1 -230 7414 7045 4 1288 23 54 0 0 chr11 92257022 92257059 -29586797 + AT_rich Low_complexity Low_complexity 1 37 0 4 1288 8011 36 12 8 chr11 92257202 92258372 -29585484 - L1Md_F3 LINE L1 -14 6570 5397 4 1288 371 73 18 0 chr11 92259102 92259157 -29584699 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1288 306 0 0 0 chr11 92259159 92259193 -29584663 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1288 557 341 80 32 chr11 92259213 92259625 -29584231 + Lx9 LINE L1 6792 7262 -382 4 1288 21 36 0 0 chr11 92259755 92259783 -29584073 + AT_rich Low_complexity Low_complexity 1 28 0 4 1288 435 324 58 37 chr11 92260944 92261133 -29582723 - RMER15 LTR ERVL -109 466 274 4 1288 612 38 0 0 chr11 92261449 92261528 -29582328 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 4 1288 24 32 0 0 chr11 92262356 92262387 -29581469 + AT_rich Low_complexity Low_complexity 1 31 0 4 1288 1960 327 55 37 chr11 92262623 92264090 -29579766 + Lx8 LINE L1 5440 6935 -538 4 1288 274 254 47 16 chr11 92264194 92264258 -29579598 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 4 1288 447 19 0 0 chr11 92264644 92264696 -29579160 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1288 1312 284 24 24 chr11 92265625 92265862 -29577994 - ORR1D2 LTR MaLR -35 335 100 4 1288 3327 40 2 5 chr11 92265862 92266259 -29577597 - MTA_Mm LTR MaLR 0 396 1 4 1288 1312 284 24 24 chr11 92266259 92266356 -29577500 - ORR1D2 LTR MaLR -271 99 1 4 1288 266 50 25 0 chr11 92267205 92267245 -29576611 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1288 648 70 0 0 chr11 92267436 92267522 -29576334 + (GA)n Simple_repeat Simple_repeat 2 87 0 4 1288 331 295 76 71 chr11 92267545 92267742 -29576114 - Lx9 LINE L1 -491 7153 6956 4 1288 379 336 0 33 chr11 92267894 92268014 -29575842 + B4A SINE B4 173 288 -4 4 1288 498 17 0 0 chr11 92268118 92268177 -29575679 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1288 757 290 9 0 chr11 92269114 92269328 -29574528 + B3 SINE B2 1 216 0 4 1288 750 285 107 22 chr11 92269375 92269834 -29574022 + L1MA8 LINE L1 5782 6279 -12 4 1288 191 380 66 8 chr11 92270104 92270226 -29573630 - L2 LINE L2 -542 2877 2749 4 1288 22 0 0 0 chr11 92271444 92271466 -29572390 + AT_rich Low_complexity Low_complexity 1 22 0 4 1288 402 196 0 0 chr11 92271779 92271886 -29571970 + (TA)n Simple_repeat Simple_repeat 1 107 0 4 1288 431 393 37 16 chr11 92271956 92272199 -29571657 + B4A SINE B4 1 248 -44 4 1288 360 350 17 8 chr11 92273367 92273485 -29570371 - B4 SINE B4 -173 119 1 4 1288 21 36 0 0 chr11 92274235 92274263 -29569593 + AT_rich Low_complexity Low_complexity 1 28 0 4 1289 2939 86 22 17 chr11 92274860 92275265 -29568591 + MTB_Mm LTR MaLR 1 407 0 4 1289 467 266 146 46 chr11 92275862 92276122 -29567734 + MER33 DNA MER1_type 35 320 -4 4 1289 618 336 38 31 chr11 92277080 92277372 -29566484 + MLT1A0 LTR MaLR 6 299 -66 4 1289 546 43 0 0 chr11 92277372 92277441 -29566415 + (TAAAA)n Simple_repeat Simple_repeat 2 70 0 4 1289 359 330 131 76 chr11 92277441 92277529 -29566327 + MLT1A0 LTR MaLR 338 407 -1 4 1289 898 245 116 10 chr11 92277616 92277917 -29565939 + L1MC1 LINE L1 5978 6310 -23 4 1289 370 322 43 32 chr11 92278101 92278287 -29565569 - MER58A DNA MER1_type -1 223 36 4 1289 369 241 36 0 chr11 92279164 92279247 -29564609 + B1_Mur3 SINE Alu 54 139 -10 4 1289 444 82 0 0 chr11 92279413 92279474 -29564382 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 4 1289 237 33 0 0 chr11 92279474 92279503 -29564353 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1289 397 252 180 40 chr11 92279631 92279954 -29563902 + RLTR9A LTR ERVK 1 368 0 4 1289 252 0 0 0 chr11 92280023 92280051 -29563805 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1289 378 233 32 43 chr11 92280303 92280397 -29563459 - PB1D7 SINE Alu 0 120 28 4 1289 189 0 0 0 chr11 92282091 92282112 -29561744 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 1289 279 0 0 0 chr11 92282899 92282930 -29560926 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1289 545 303 75 10 chr11 92283063 92283263 -29560593 - B3 SINE B2 -3 213 1 4 1289 802 275 102 58 chr11 92283767 92284092 -29559764 - ORR1E LTR MaLR -20 339 1 4 1289 450 0 0 0 chr11 92284226 92284276 -29559580 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1289 946 232 73 94 chr11 92284496 92284569 -29559287 + MT2A LTR ERVL 16 86 -447 4 1289 203 32 65 0 chr11 92284569 92284600 -29559256 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 4 1289 946 244 78 94 chr11 92284600 92284880 -29558976 + MT2A LTR ERVL 87 493 -108 4 1289 207 0 0 0 chr11 92284880 92284903 -29558953 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 4 1289 633 282 95 95 chr11 92284903 92284997 -29558859 + MT2A LTR ERVL 494 601 0 4 1289 1151 301 49 6 chr11 92285020 92285348 -29558508 - ORR1E LTR MaLR -13 346 5 4 1289 573 250 83 33 chr11 92285358 92285561 -29558295 - ORR1E-int LTR MaLR -6 1503 1193 4 1289 804 257 21 58 chr11 92285567 92285807 -29558049 + ORR1D2 LTR MaLR 121 351 -19 4 1289 706 118 21 62 chr11 92286112 92286257 -29557599 - Lx LINE L1 -5 6649 6511 4 1289 3449 30 2 0 chr11 92286788 92287183 -29556673 + MTA_Mm LTR MaLR 1 396 0 4 1289 665 134 42 0 chr11 92287840 92287959 -29555897 - Lx LINE L1 -610 6044 5921 4 1289 2661 205 19 6 chr11 92287959 92288479 -29555377 + Lx LINE L1 6112 6638 -16 4 1289 30699 81 3 9 chr11 92288481 92293472 -29550384 + L1Md_F2 LINE L1 632 5586 -297 4 1289 7887 55 3 1 chr11 92293473 92294458 -29549398 + L1Md_F2 LINE L1 5588 6574 -8 4 1289 22 0 0 0 chr11 92294487 92294509 -29549347 + AT_rich Low_complexity Low_complexity 1 22 0 4 1289 255 107 0 51 chr11 92294679 92294738 -29549118 + B2_Mm2 SINE B2 130 185 -10 4 1289 296 136 0 33 chr11 92294738 92294799 -29549057 + (CATA)n Simple_repeat Simple_repeat 1 59 0 4 1289 1385 255 96 6 chr11 92296788 92297151 -29546705 + MTD LTR MaLR 24 419 0 4 1289 318 242 0 0 chr11 92297151 92297212 -29546644 + B4A SINE B4 12 72 -220 4 1289 447 293 17 62 chr11 92297291 92297469 -29546387 + B4A SINE B4 121 290 -2 4 1289 567 252 14 7 chr11 92297489 92297637 -29546219 - HAL1-2a_MD LINE L1 -550 2474 2326 4 1289 7460 75 3 3 chr11 92297661 92299181 -29544675 - L1_Mus1 LINE L1 0 6567 5047 4 1289 223 186 0 0 chr11 92299267 92299310 -29544546 + T-rich Low_complexity Low_complexity 1 43 0 4 1289 203 211 19 0 chr11 92300575 92300627 -29543229 + A-rich Low_complexity Low_complexity 2 54 0 4 1289 737 191 34 67 chr11 92300650 92300858 -29542998 - Lx5 LINE L1 -1049 6001 5801 4 1289 6662 67 16 4 chr11 92300856 92302317 -29541539 - L1Md_F2 LINE L1 -12 6570 5086 4 1289 1892 170 41 3 chr11 92302340 92302705 -29541151 - Lx5 LINE L1 -108 5772 5394 4 1289 1665 300 114 21 chr11 92302706 92303730 -29540126 + Lx6 LINE L1 6070 7410 -50 4 1289 24 32 0 0 chr11 92303755 92303786 -29540070 + AT_rich Low_complexity Low_complexity 1 31 0 4 1289 375 121 0 0 chr11 92306118 92306176 -29537680 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1289 637 309 83 72 chr11 92307610 92307973 -29535883 + RLTR26 LTR ERVK 95 461 -181 4 1289 369 277 69 8 chr11 92308987 92309118 -29534738 + MER5A1 DNA MER1_type 23 161 -5 4 1289 2056 218 65 22 chr11 92309484 92309977 -29533879 + RMER20A LTR ERVK 3 516 0 4 1289 631 348 17 30 chr11 92309997 92310294 -29533562 - B4A SINE B4 0 292 7 4 1289 207 348 102 71 chr11 92310369 92310595 -29533261 + L2a LINE L2 3189 3421 -5 4 1289 266 283 130 17 chr11 92311022 92311119 -29532737 + RMER5 LTR ERV1 33 142 -392 4 1289 321 292 68 98 chr11 92311119 92311354 -29532502 - RLTR14 LTR ERV1 0 382 155 4 1289 737 299 84 76 chr11 92311454 92311823 -29532033 + RMER5 LTR ERV1 159 530 -4 4 1289 481 368 59 85 chr11 92313225 92313502 -29530354 + MT2A LTR ERVL 3 283 -250 4 1289 1086 123 16 31 chr11 92313502 92313695 -29530161 - B2_Mm2 SINE B2 -5 190 1 4 1289 481 335 99 66 chr11 92313695 92313931 -29529925 + MT2A LTR ERVL 284 546 -8 4 1289 734 217 11 17 chr11 92314566 92314744 -29529112 + RMER17B LTR ERVK 179 355 -603 4 1289 338 292 90 23 chr11 92314972 92315105 -29528751 + MTD LTR MaLR 278 419 0 4 1289 561 15 0 0 chr11 92315183 92315249 -29528607 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1289 473 250 31 25 chr11 92316195 92316355 -29527501 + Lx4B LINE L1 6890 7050 -8 4 1289 281 208 97 0 chr11 92316595 92316667 -29527189 - MLT1B LTR MaLR 0 390 312 4 1289 270 228 18 0 chr11 92316879 92316936 -29526920 - MLT1B LTR MaLR -409 58 1 4 1289 395 291 21 42 chr11 92316996 92317186 -29526670 - Lx9 LINE L1 -1192 6452 6267 4 1289 230 209 58 0 chr11 92317187 92317273 -29526583 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1289 236 336 0 8 chr11 92317498 92317618 -29526238 - Lx8 LINE L1 -1555 5918 5800 4 1289 828 317 80 12 chr11 92317722 92318134 -29525722 + Lx9 LINE L1 6512 6951 -693 4 1289 1003 273 53 32 chr11 92318960 92319338 -29524518 - Lx6 LINE L1 -19 7441 7056 4 1289 2369 211 44 22 chr11 92319343 92320051 -29523805 - Lx6 LINE L1 -931 6119 5298 4 1289 3232 114 62 30 chr11 92320051 92320755 -29523101 + RLTR13D4 LTR ERVK 1 1032 -1 4 1289 3918 206 30 2 chr11 92320755 92321709 -29522147 - Lx6 LINE L1 -576 5304 4324 4 1289 485 364 11 17 chr11 92322728 92322904 -29520952 - B4A SINE B4 -116 176 2 4 1289 195 440 14 0 chr11 92323474 92323615 -29520241 - MIR SINE MIR -112 150 8 4 1289 218 56 0 27 chr11 92325718 92325755 -29518101 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 1289 209 264 0 19 chr11 92326532 92326586 -29517270 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1289 500 283 9 0 chr11 92326611 92326717 -29517139 + RSINE1 SINE B4 45 151 -14 4 1289 186 43 0 0 chr11 92326731 92326754 -29517102 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1289 458 191 31 41 chr11 92327463 92327484 -29516372 + MTE-int LTR MaLR 319 340 -1240 5 1289 4422 37 17 4 chr11 92327484 92328020 -29515836 + L1Md_F2 LINE L1 6040 6582 0 5 1289 458 191 31 41 chr11 92328020 92328096 -29515760 + MTE-int LTR MaLR 341 415 -1165 5 1289 400 153 0 65 chr11 92328101 92328178 -29515678 - MTEa LTR MaLR -307 72 1 5 1289 273 109 0 0 chr11 92328291 92328337 -29515519 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 5 1289 27 62 0 0 chr11 92328844 92328892 -29514964 + AT_rich Low_complexity Low_complexity 1 48 0 5 1289 609 291 66 38 chr11 92330156 92330367 -29513489 + ID_B1 SINE B4 1 217 -7 5 1289 543 335 69 69 chr11 92330397 92330746 -29513110 - ORR1E LTR MaLR -10 349 1 5 1289 36 0 0 0 chr11 92331016 92331052 -29512804 + AT_rich Low_complexity Low_complexity 1 36 0 5 1289 242 355 46 9 chr11 92331118 92331226 -29512630 + B4A SINE B4 8 119 -173 5 1289 2437 177 25 18 chr11 92331239 92331728 -29512128 - Lx5 LINE L1 -452 6598 6107 5 1289 1574 217 102 5 chr11 92331724 92332108 -29511748 + Lx5 LINE L1 6630 7050 0 5 1289 180 200 0 0 chr11 92332117 92332157 -29511699 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1289 412 324 13 20 chr11 92332164 92332315 -29511541 + B4A SINE B4 82 231 -61 5 1289 273 203 0 33 chr11 92333817 92333878 -29509978 + L1MA8 LINE L1 6174 6232 -59 5 1289 288 0 0 0 chr11 92333897 92333929 -29509927 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1289 31 58 0 0 chr11 92333930 92333982 -29509874 + AT_rich Low_complexity Low_complexity 1 52 0 5 1289 319 165 41 0 chr11 92334615 92334712 -29509144 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 5 1289 232 360 96 22 chr11 92334717 92334827 -29509029 - B1F1 SINE Alu -12 115 1 5 1289 915 82 35 17 chr11 92335008 92335181 -29508675 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 5 1289 947 106 36 10 chr11 92335221 92335527 -29508329 + (TAGA)n Simple_repeat Simple_repeat 1 314 0 5 1289 315 71 0 0 chr11 92336466 92336508 -29507348 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1289 1102 65 65 0 chr11 92339381 92339535 -29504321 - L1Md_F2 LINE L1 -3 6579 6416 5 1289 3122 42 39 0 chr11 92340308 92340689 -29503167 - MTA_Mm LTR MaLR 0 396 1 5 1289 328 315 68 18 chr11 92341132 92341352 -29502504 - L1MB1 LINE L1 -133 6035 5805 5 1289 381 292 75 43 chr11 92341363 92341524 -29502332 + B4A SINE B4 8 173 -119 5 1289 405 246 43 26 chr11 92341659 92341776 -29502080 - L1MB1 LINE L1 -440 5728 5610 5 1289 476 308 113 11 chr11 92341822 92342203 -29501653 - L1MB1 LINE L1 -912 5228 4809 5 1289 804 259 102 12 chr11 92342275 92342599 -29501257 - L1MB1 LINE L1 -2049 4091 3739 5 1289 22 35 0 0 chr11 92342888 92342917 -29500939 + AT_rich Low_complexity Low_complexity 1 29 0 5 1289 480 18 0 0 chr11 92343492 92343549 -29500307 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 1289 369 0 0 0 chr11 92343835 92343876 -29499980 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1289 474 18 0 0 chr11 92344917 92344972 -29498884 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1289 258 32 0 0 chr11 92344972 92345002 -29498854 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1289 288 0 0 0 chr11 92346330 92346362 -29497494 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1289 339 311 22 22 chr11 92346363 92346498 -29497358 - B1_Mur1 SINE Alu -13 136 2 5 1289 1692 189 140 2 chr11 92347179 92347592 -29496264 - Lx9 LINE L1 -2 7642 7173 5 1289 221 281 0 0 chr11 92347618 92347675 -29496181 + T-rich Low_complexity Low_complexity 1 57 0 5 1289 1851 198 62 25 chr11 92347718 92348122 -29495734 - MTC LTR MaLR -2 419 1 5 1289 3681 263 80 27 chr11 92348244 92349966 -29493890 - Lx9 LINE L1 -145 7499 5510 5 1289 525 273 56 17 chr11 92349961 92350192 -29493664 - Lx9 LINE L1 -515 5332 5093 5 1289 439 252 0 18 chr11 92350190 92350299 -29493557 - L1_Rod LINE L1 -390 5457 5351 5 1289 345 109 0 0 chr11 92350325 92350389 -29493467 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1289 212 167 0 0 chr11 92350808 92350850 -29493006 + CT-rich Low_complexity Low_complexity 2 43 0 5 1289 527 280 132 27 chr11 92350921 92351178 -29492678 - B4A SINE B4 -6 286 3 5 1289 206 287 35 9 chr11 92351590 92351706 -29492150 + (TA)n Simple_repeat Simple_repeat 1 119 0 5 1289 203 173 19 0 chr11 92352377 92352429 -29491427 + A-rich Low_complexity Low_complexity 6 58 0 5 1289 228 170 0 0 chr11 92353093 92353146 -29490710 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1289 546 233 0 0 chr11 92353158 92353338 -29490518 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1289 344 48 0 0 chr11 92353341 92353383 -29490473 + HAL1-3A_ME LINE L1 1976 2017 -841 5 1289 214 164 36 0 chr11 92355527 92355582 -29488274 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1289 21 36 0 0 chr11 92356326 92356354 -29487502 + AT_rich Low_complexity Low_complexity 1 28 0 5 1289 247 284 46 64 chr11 92356624 92356733 -29487123 - MIR SINE MIR -5 257 151 5 1289 21 0 0 0 chr11 92356856 92356877 -29486979 + AT_rich Low_complexity Low_complexity 1 21 0 5 1289 526 95 62 25 chr11 92357127 92357289 -29486567 + (TCTA)n Simple_repeat Simple_repeat 4 171 0 5 1289 23 33 0 0 chr11 92357552 92357582 -29486274 + AT_rich Low_complexity Low_complexity 1 30 0 5 1289 23 0 0 0 chr11 92357653 92357676 -29486180 + AT_rich Low_complexity Low_complexity 1 23 0 5 1289 194 62 0 30 chr11 92357941 92357974 -29485882 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1289 662 270 0 0 chr11 92358000 92358137 -29485719 - B1_Mur1 SINE Alu -9 140 4 5 1289 351 338 95 55 chr11 92358494 92358820 -29485036 + L1MEc LINE L1 354 692 -5708 5 1289 8443 142 20 17 chr11 92359034 92361079 -29482777 + L1VL4 LINE L1 256 2309 -1250 5 1289 393 118 14 42 chr11 92361075 92361146 -29482710 + Lx3C LINE L1 6087 6155 -818 5 1289 841 134 0 8 chr11 92361144 92361272 -29482584 - Lx3B LINE L1 -710 6263 6137 5 1289 437 66 0 0 chr11 92361276 92361337 -29482519 - L1_Mur1 LINE L1 -3238 2648 2588 5 1289 3860 138 28 69 chr11 92361343 92361463 -29482393 + Lx3C LINE L1 6267 6385 -591 5 1289 297 0 0 0 chr11 92361463 92361496 -29482360 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 5 1289 3860 138 28 69 chr11 92361496 92362088 -29481768 + Lx3C LINE L1 6386 6950 -26 5 1289 557 256 56 29 chr11 92362343 92362634 -29481222 - L1MB7 LINE L1 -191 5993 5691 5 1289 3443 28 0 2 chr11 92363336 92363733 -29480123 - MTA_Mm LTR MaLR 0 396 1 5 1289 218 345 109 0 chr11 92364078 92364197 -29479659 - ID_B1 SINE B4 -9 215 84 5 1289 498 17 0 0 chr11 92366070 92366129 -29477727 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1289 186 189 0 0 chr11 92366130 92366167 -29477689 + GA-rich Low_complexity Low_complexity 2 38 0 5 1289 779 290 78 43 chr11 92366519 92366778 -29477078 + B4A SINE B4 2 273 -19 5 1289 243 0 0 0 chr11 92366778 92366805 -29477051 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1289 840 72 0 0 chr11 92366805 92366929 -29476927 + (GA)n Simple_repeat Simple_repeat 2 126 0 5 1289 779 290 78 43 chr11 92366929 92366949 -29476907 + B4A SINE B4 274 291 -1 5 1289 429 70 0 0 chr11 92366992 92367049 -29476807 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1289 517 264 24 0 chr11 92367401 92367526 -29476330 + B1F SINE Alu 3 130 -19 5 1289 4334 240 66 5 chr11 92369142 92370289 -29473567 + Lx9 LINE L1 6352 7568 -76 5 1289 2220 69 3 3 chr11 92370788 92371092 -29472764 + ORR1A1-int LTR MaLR 1489 1792 0 5 1289 2628 46 62 0 chr11 92371093 92371418 -29472438 + ORR1A1 LTR MaLR 2 346 0 5 1289 27 29 0 0 chr11 92371471 92371505 -29472351 + AT_rich Low_complexity Low_complexity 1 34 0 5 1289 21 0 0 0 chr11 92371946 92371967 -29471889 + AT_rich Low_complexity Low_complexity 1 21 0 5 1289 887 285 0 23 chr11 92372016 92372235 -29471621 + B3 SINE B2 3 216 0 5 1289 423 0 0 0 chr11 92372839 92372886 -29470970 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1289 253 355 13 0 chr11 92373512 92373588 -29470268 - ID4_ SINE ID -4 79 3 5 1289 906 145 0 0 chr11 92374000 92374152 -29469704 + (TCC)n Simple_repeat Simple_repeat 3 154 0 5 1289 235 400 42 21 chr11 92376742 92376931 -29466925 - MLT1B LTR MaLR 0 390 198 5 1289 6984 196 41 14 chr11 92377326 92379340 -29464516 + Lx5 LINE L1 4964 7047 -3 5 1289 3245 45 8 0 chr11 92380483 92380882 -29462974 - L1_Mus1 LINE L1 -548 6019 5618 5 1289 486 284 51 0 chr11 92381390 92381566 -29462290 + L1M5 LINE L1 5401 5585 -579 5 1289 225 157 19 19 chr11 92381980 92382032 -29461824 + T-rich Low_complexity Low_complexity 3 54 0 5 1289 297 310 58 0 chr11 92382614 92382701 -29461155 - ORR1E LTR MaLR -265 94 3 5 1289 244 303 65 33 chr11 92382919 92383011 -29460845 + PB1D7 SINE Alu 3 97 -23 5 1289 473 346 43 14 chr11 92383251 92383462 -29460394 + Lx8 LINE L1 6970 7186 -287 5 1289 514 312 20 54 chr11 92385144 92385347 -29458509 + Charlie19a DNA Charlie 11 206 -180 5 1289 258 106 0 0 chr11 92386025 92386072 -29457784 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 5 1289 414 79 0 0 chr11 92386109 92386172 -29457684 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1289 525 44 0 0 chr11 92386326 92386394 -29457462 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1289 5957 57 4 0 chr11 92386451 92387200 -29456656 + L1Md_F2 LINE L1 5817 6568 -14 5 1289 190 152 34 0 chr11 92387231 92387290 -29456566 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1289 1073 239 62 66 chr11 92387308 92387770 -29456086 - MT2A LTR ERVL -40 561 1 5 1289 6035 147 4 9 chr11 92387883 92388884 -29454972 - Lx2A1 LINE L1 0 7008 6013 5 1289 3651 134 75 3 chr11 92388884 92389750 -29454106 + Lx2A1 LINE L1 5036 5963 -1045 5 1289 633 116 23 23 chr11 92389767 92389899 -29453957 - L1_Mus3 LINE L1 -6 6632 6501 5 1289 503 307 16 0 chr11 92390044 92390171 -29453685 + Lx8 LINE L1 7161 7289 -184 5 1289 7658 77 6 4 chr11 92390761 92392111 -29451745 - L1_Mus1 LINE L1 0 6567 5243 5 1289 307 41 41 0 chr11 92392730 92392779 -29451077 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 1289 672 13 0 0 chr11 92393465 92393542 -29450314 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 5 1289 5474 59 1 3 chr11 92393556 92394255 -29449601 - L1Md_F2 LINE L1 -2 6580 5883 5 1289 30 0 0 0 chr11 92394261 92394291 -29449565 + AT_rich Low_complexity Low_complexity 1 30 0 5 1289 7761 46 0 5 chr11 92394349 92395303 -29448553 + L1Md_F2 LINE L1 5634 6582 0 5 1289 334 290 15 8 chr11 92395888 92396020 -29447836 + (TG)n Simple_repeat Simple_repeat 2 134 0 6 1289 188 111 0 27 chr11 92396077 92396114 -29447742 + (TATG)n Simple_repeat Simple_repeat 3 38 0 6 1289 270 0 0 0 chr11 92397704 92397734 -29446122 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 6 1289 381 22 0 0 chr11 92397893 92397939 -29445917 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1289 679 265 204 13 chr11 92397960 92398153 -29445703 - Lx9 LINE L1 -206 7438 7187 6 1289 4972 56 2 0 chr11 92398153 92398774 -29445082 + L1Md_F2 LINE L1 5961 6582 0 6 1289 679 265 204 13 chr11 92398774 92398893 -29444963 - Lx9 LINE L1 -458 7186 7067 6 1289 735 296 36 53 chr11 92399256 92399559 -29444297 - Lx7 LINE L1 -532 7164 6867 6 1289 21 0 0 0 chr11 92399931 92399952 -29443904 + AT_rich Low_complexity Low_complexity 1 21 0 6 1289 272 340 81 107 chr11 92400782 92400801 -29443055 - MLT1I LTR MaLR -8 403 385 6 1289 740 291 28 14 chr11 92400801 92401017 -29442839 - MER20 DNA MER1_type 0 219 1 6 1289 272 340 81 107 chr11 92401017 92401343 -29442513 - MLT1I LTR MaLR -27 384 67 6 1289 351 288 15 22 chr11 92401560 92401695 -29442161 + MIR SINE MIR 105 238 -24 6 1289 445 306 12 36 chr11 92402164 92402330 -29441526 + RSINE1 SINE B4 4 165 0 6 1289 618 82 0 0 chr11 92402509 92402594 -29441262 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1289 690 288 40 0 chr11 92402724 92402922 -29440934 - B3 SINE B2 -10 206 1 6 1289 5279 95 28 3 chr11 92402932 92403688 -29440168 - L1_Mus4 LINE L1 0 6636 5862 6 1289 1124 261 89 87 chr11 92403820 92404358 -29439498 - RLTR40 LTR ERVK -259 558 20 6 1289 339 336 99 75 chr11 92404599 92404892 -29438964 + ORR1E LTR MaLR 56 355 -4 6 1289 719 227 139 20 chr11 92405218 92405470 -29438386 + RMER20B LTR ERVK 132 413 -214 6 161 482 297 37 74 chr11 92405603 92405901 -29437955 + B4A SINE B4 2 288 -4 6 1290 310 253 102 11 chr11 92406680 92406768 -29437088 + Lx7 LINE L1 7209 7304 -392 6 1290 234 175 13 63 chr11 92406769 92406860 -29436996 + T-rich Low_complexity Low_complexity 1 86 0 6 1290 261 135 0 0 chr11 92406876 92406928 -29436928 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1290 43 71 0 0 chr11 92406972 92407057 -29436799 + AT_rich Low_complexity Low_complexity 1 85 0 6 1290 848 267 88 27 chr11 92407992 92408288 -29435568 + Lx8 LINE L1 7101 7414 -59 6 1290 414 0 0 0 chr11 92408303 92408349 -29435507 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1290 1144 74 0 0 chr11 92408500 92408648 -29435208 - B1_Mus1 SINE Alu 0 148 1 6 1290 302 247 122 49 chr11 92408656 92408860 -29434996 + L1MA8 LINE L1 5686 5904 -387 6 1290 660 241 62 75 chr11 92408864 92409383 -29434473 - L1VL4 LINE L1 -5636 996 445 6 1290 270 0 0 0 chr11 92409658 92409688 -29434168 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 6 1290 318 321 27 60 chr11 92409867 92410016 -29433840 - MIRb SINE MIR -54 214 71 6 1290 240 350 98 18 chr11 92411124 92411287 -29432569 + L2 LINE L2 301 476 -2943 6 1290 429 323 69 2 chr11 92411406 92411583 -29432273 + Lx8 LINE L1 6794 6998 -475 6 1290 1016 156 223 59 chr11 92411733 92412035 -29431821 + ORR1B1 LTR MaLR 1 318 -11 6 1290 351 0 0 0 chr11 92412100 92412139 -29431717 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1290 243 0 0 0 chr11 92412150 92412177 -29431679 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1290 439 363 84 19 chr11 92412356 92412617 -29431239 + MTE-int LTR MaLR 549 826 -754 6 1290 441 0 0 0 chr11 92412648 92412697 -29431159 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1290 185 35 0 65 chr11 92412723 92412754 -29431102 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 6 1290 507 329 55 46 chr11 92412817 92413034 -29430822 + MTE-int LTR MaLR 823 1041 -539 6 1290 280 271 125 0 chr11 92413037 92413133 -29430723 + MTEa LTR MaLR 264 371 -8 6 1290 187 132 57 0 chr11 92413529 92413582 -29430274 + T-rich Low_complexity Low_complexity 2 57 0 6 1290 26 30 0 0 chr11 92414049 92414082 -29429774 + AT_rich Low_complexity Low_complexity 1 33 0 6 1290 548 40 13 0 chr11 92414088 92414163 -29429693 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1290 564 226 27 62 chr11 92414184 92414330 -29429526 - B3A SINE B2 -57 141 1 6 1290 209 353 94 14 chr11 92414522 92414660 -29429196 + MER5A DNA MER1_type 41 189 0 6 1290 225 0 0 0 chr11 92414810 92414835 -29429021 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1290 818 255 240 141 chr11 92415169 92415653 -29428203 + MT2A LTR ERVL 1 532 -1 6 1290 719 317 78 3 chr11 92415684 92416019 -29427837 - Lx9 LINE L1 -212 7432 7073 6 1290 28 48 0 0 chr11 92416163 92416205 -29427651 + AT_rich Low_complexity Low_complexity 1 42 0 6 1290 2151 192 5 76 chr11 92416670 92417115 -29426741 - MTC LTR MaLR -8 413 1 6 1290 257 281 47 0 chr11 92417369 92417433 -29426423 + ID4_ SINE ID 11 77 -6 6 1290 195 162 0 0 chr11 92417558 92417595 -29426261 + A-rich Low_complexity Low_complexity 6 42 0 6 1290 288 0 0 0 chr11 92417601 92417633 -29426223 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1290 261 0 0 0 chr11 92417633 92417661 -29426195 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1290 26 30 0 0 chr11 92417726 92417759 -29426097 + AT_rich Low_complexity Low_complexity 1 33 0 6 1290 2496 320 92 51 chr11 92417877 92417966 -29425890 - Lx8 LINE L1 -29 7444 7348 6 1290 1442 79 5 0 chr11 92417966 92418168 -29425688 - L1_Mus2 LINE L1 0 6566 6364 6 1290 2496 320 92 51 chr11 92418168 92418472 -29425384 - Lx8 LINE L1 -126 7347 7039 6 1290 1241 126 16 0 chr11 92418472 92418655 -29425201 - B2_Mm2 SINE B2 -8 187 2 6 1290 2496 320 92 51 chr11 92418655 92418921 -29424935 - Lx8 LINE L1 -435 7038 6749 6 1290 1914 242 51 84 chr11 92418921 92419552 -29424304 - RMER19C LTR ERVK -1 610 1 6 1290 2496 306 90 37 chr11 92419552 92420899 -29422957 - Lx8 LINE L1 -725 6748 5339 6 1290 456 351 67 73 chr11 92420942 92421476 -29422380 + L1ME3B LINE L1 5457 5987 -253 6 1290 1502 178 24 35 chr11 92423461 92423912 -29419944 + BGLII_A LTR ERVK 1 394 -51 6 1290 793 270 32 44 chr11 92424328 92424580 -29419276 - MTE2a LTR MaLR -3 376 128 6 1290 488 36 46 35 chr11 92424684 92424771 -29419085 + (TAAA)n Simple_repeat Simple_repeat 2 89 0 6 1290 304 222 56 0 chr11 92424865 92424937 -29418919 - MTE2a LTR MaLR -303 76 1 6 1290 519 235 23 159 chr11 92425092 92425259 -29418597 + Lx7 LINE L1 7356 7509 -187 6 1290 1026 97 0 0 chr11 92425259 92425393 -29418463 - B1_Mus1 SINE Alu -13 135 2 6 1290 519 235 23 159 chr11 92425393 92425538 -29418318 + Lx7 LINE L1 7510 7617 -79 6 1290 4881 54 2 2 chr11 92425538 92426149 -29417707 + L1Md_F2 LINE L1 5972 6582 0 6 1290 519 235 23 159 chr11 92426149 92426230 -29417626 + Lx7 LINE L1 7618 7696 0 6 1290 318 289 66 18 chr11 92426252 92426347 -29417509 + L1M3 LINE L1 5491 5596 -704 6 1290 210 37 0 0 chr11 92426347 92426374 -29417482 + (CAA)n Simple_repeat Simple_repeat 2 28 0 6 1290 318 285 54 15 chr11 92426374 92426447 -29417409 + L1M3 LINE L1 5597 5669 -631 6 1290 1069 283 38 78 chr11 92426513 92426935 -29416921 - RMER19C LTR ERVK -206 405 1 6 1290 437 198 29 53 chr11 92428233 92428404 -29415452 - Lx9 LINE L1 -22 7622 7456 6 1290 25 31 0 0 chr11 92429373 92429405 -29414451 + AT_rich Low_complexity Low_complexity 1 32 0 6 1290 1709 201 28 14 chr11 92429647 92430005 -29413851 + ORR1D1 LTR MaLR 12 374 0 6 1290 7890 131 43 15 chr11 92430088 92432356 -29411500 - Lx3_Mus LINE L1 -2 7007 4655 6 1290 4393 101 11 0 chr11 92432331 92432977 -29410879 - Lx3_Mus LINE L1 -3147 2739 2087 6 1290 1569 235 27 89 chr11 92432990 92433517 -29410339 - Lx3_Mus LINE L1 -6485 499 6 6 1290 686 286 11 0 chr11 92433646 92433828 -29410028 - Lx9 LINE L1 -624 7020 6837 6 1290 374 307 237 15 chr11 92433854 92434323 -29409533 + Lx9 LINE L1 7052 7624 -20 6 1290 931 320 82 45 chr11 92434553 92434887 -29408969 - Charlie2a DNA MER1_type -80 2781 2432 6 1290 1272 82 21 42 chr11 92434887 92435079 -29408777 - B2_Mm2 SINE B2 -7 188 1 6 1290 931 320 82 45 chr11 92435079 92435147 -29408709 - Charlie2a DNA MER1_type -430 2431 2364 6 1290 1407 75 0 26 chr11 92435147 92435338 -29408518 - B2_Mm1a SINE B2 -7 186 1 6 1290 931 320 82 45 chr11 92435338 92435967 -29407889 - Charlie2a DNA MER1_type -498 2363 1711 6 1290 240 255 0 18 chr11 92436236 92436292 -29407564 + GA-rich Low_complexity Low_complexity 3 57 0 6 1290 782 153 0 6 chr11 92436314 92436492 -29407364 + GA-rich Low_complexity Low_complexity 2 178 0 6 1290 1124 75 0 7 chr11 92436524 92436671 -29407185 + B1_Mus1 SINE Alu 3 148 0 6 1290 238 191 44 0 chr11 92436671 92436739 -29407117 + (CAAA)n Simple_repeat Simple_repeat 1 71 0 6 1290 198 270 66 26 chr11 92437260 92437336 -29406520 - L2c LINE L2 -391 2996 2918 6 1290 489 76 0 0 chr11 92438199 92438265 -29405591 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 6 1290 352 379 21 7 chr11 92438996 92439137 -29404719 + MamRep1879 DNA hAT? 10 152 -64 6 1290 22 0 0 0 chr11 92439453 92439475 -29404381 + AT_rich Low_complexity Low_complexity 1 22 0 6 1290 270 0 0 0 chr11 92439649 92439679 -29404177 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 6 1290 2480 164 2 14 chr11 92440037 92440463 -29403393 + MTC LTR MaLR 1 421 0 6 1290 396 0 0 0 chr11 92440719 92440763 -29403093 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1290 8915 101 5 0 chr11 92442688 92444558 -29399298 + L1_Mus1 LINE L1 4515 6394 -173 6 1290 462 67 0 85 chr11 92444560 92444642 -29399214 + L1_Mus1 LINE L1 6493 6567 0 6 1290 26 64 0 0 chr11 92444750 92444797 -29399059 + AT_rich Low_complexity Low_complexity 1 47 0 6 1290 8312 48 4 0 chr11 92444797 92446606 -29397250 - L1Md_F3 LINE L1 -5 6579 4762 6 1290 4438 14 0 0 chr11 92446838 92447331 -29396525 + MT2_Mm LTR ERVL 1 493 0 6 1290 45135 16 8 0 chr11 92447331 92452651 -29391205 + MERVL-int LTR ERVL 1 5360 -125 6 1290 371 179 46 35 chr11 92452651 92452738 -29391118 + ORR1A3-int LTR MaLR 553 640 -1323 6 1290 302 0 0 0 chr11 92452738 92452776 -29391080 + MERVL-int LTR ERVL 5448 5485 0 6 1290 4394 18 0 0 chr11 92452776 92453269 -29390587 + MT2_Mm LTR ERVL 1 493 0 6 1290 784 288 5 16 chr11 92453695 92453889 -29389967 + B3A SINE B2 6 197 -1 6 1290 294 266 0 0 chr11 92453900 92453964 -29389892 + B4A SINE B4 2 65 -227 6 1290 578 318 74 0 chr11 92454054 92454230 -29389626 - B3 SINE B2 -26 190 2 6 1290 183 275 43 32 chr11 92454694 92454788 -29389068 - L3 LINE CR1 -4254 235 141 6 1290 462 132 0 0 chr11 92455196 92455272 -29388584 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1290 183 205 224 24 chr11 92455693 92455778 -29388078 + MIR SINE MIR 96 197 -65 6 1290 36853 9 0 1 chr11 92455881 92461924 -29381932 + L1Md_A LINE L1 1 5586 -297 6 1290 9073 2 0 0 chr11 92461924 92462920 -29380936 + L1Md_A LINE L1 5587 6582 0 6 1290 2397 108 101 0 chr11 92463167 92463729 -29380127 - L1_Mus4 LINE L1 -727 5909 5222 6 1290 394 106 61 0 chr11 92463716 92463782 -29380074 + Lx LINE L1 5896 5965 -689 7 1290 3076 131 6 10 chr11 92463835 92464335 -29379521 + Lx LINE L1 6094 6591 -63 7 1290 256 182 0 0 chr11 92464337 92464381 -29379475 - Lx7 LINE L1 -997 6699 6656 7 1290 401 284 39 84 chr11 92465118 92465272 -29378584 - B1F1 SINE Alu -2 147 1 7 1290 369 337 37 33 chr11 92465562 92465835 -29378021 + B4A SINE B4 1 274 -18 7 1290 3613 74 2 2 chr11 92466936 92467408 -29376448 - L1_Mus1 LINE L1 -1 6566 6095 7 1290 1133 49 0 0 chr11 92467408 92467552 -29376304 + L1_Mus1 LINE L1 5967 6110 -457 7 1290 342 303 0 95 chr11 92467546 92467714 -29376142 + Lx8 LINE L1 7225 7376 -97 7 1290 207 100 0 0 chr11 92467973 92468003 -29375853 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 1290 198 0 0 0 chr11 92469922 92469944 -29373912 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1290 1108 83 0 0 chr11 92470275 92470420 -29373436 - B1_Mus1 SINE Alu -2 146 2 7 1290 22 56 0 0 chr11 92471325 92471361 -29372495 + AT_rich Low_complexity Low_complexity 1 36 0 7 1290 6286 194 68 6 chr11 92471401 92472777 -29371079 - Lx5 LINE L1 0 7050 5589 7 1290 225 0 0 0 chr11 92472870 92472895 -29370961 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7 1290 863 265 139 21 chr11 92472896 92473227 -29370629 - ORR1D1 LTR MaLR -3 371 2 7 1290 324 307 169 23 chr11 92473303 92473563 -29370293 - Lx8 LINE L1 -333 7140 6843 7 1290 183 80 0 0 chr11 92473805 92473830 -29370026 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 7 1290 321 26 0 0 chr11 92474120 92474158 -29369698 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1290 852 10 0 0 chr11 92474158 92474254 -29369602 + (CA)n Simple_repeat Simple_repeat 1 97 0 7 1290 278 302 195 17 chr11 92474555 92474673 -29369183 + B1F2 SINE Alu 1 139 -10 7 1290 23 54 0 0 chr11 92474754 92474791 -29369065 + AT_rich Low_complexity Low_complexity 1 37 0 7 1290 432 0 0 0 chr11 92474947 92474995 -29368861 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1290 2626 201 68 13 chr11 92475824 92476354 -29367502 - RLTR20B1 LTR ERVK -4 559 1 7 1290 331 268 21 152 chr11 92476629 92476774 -29367082 + RMER15 LTR ERVL 3 128 -447 7 1290 539 350 47 34 chr11 92476810 92477106 -29366750 + RMER15 LTR ERVL 276 575 0 7 1290 268 277 0 94 chr11 92477257 92477448 -29366408 + RMER17C LTR ERVK 88 260 -150 7 1290 370 207 0 24 chr11 92477421 92477505 -29366351 + RMER13B LTR ERVK 309 390 -518 7 1290 477 0 0 0 chr11 92478625 92478678 -29365178 + (CATCT)n Simple_repeat Simple_repeat 2 54 0 7 1290 740 281 118 137 chr11 92478953 92479333 -29364523 + MTE2b LTR MaLR 3 375 -4 7 1290 584 312 121 59 chr11 92479873 92480196 -29363660 + ORR1E LTR MaLR 1 343 -16 7 1290 1120 82 7 0 chr11 92480441 92480587 -29363269 + B1_Mus2 SINE Alu 1 147 0 7 1290 234 348 53 18 chr11 92481088 92481202 -29362654 - MLT1C LTR MaLR -1 466 349 7 1290 387 320 70 56 chr11 92481356 92481872 -29361984 - L1MA4 LINE L1 -412 5888 5366 7 1290 902 310 71 26 chr11 92481935 92482680 -29361176 - L1MA4 LINE L1 -908 5235 4424 7 1290 308 320 92 20 chr11 92483415 92483568 -29360288 - L1M5 LINE L1 -1341 4805 4642 7 1290 1079 69 0 27 chr11 92483969 92484118 -29359738 - B1_Mus2 SINE Alu 0 147 3 7 1290 25 31 0 0 chr11 92484282 92484314 -29359542 + AT_rich Low_complexity Low_complexity 1 32 0 7 1290 428 220 101 43 chr11 92484372 92484510 -29359346 - Charlie12 DNA MER1_type -3 2870 2725 7 1290 274 24 24 0 chr11 92485752 92485793 -29358063 + B1_Mus2 SINE Alu 105 146 -1 7 1290 737 128 8 0 chr11 92486171 92486296 -29357560 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 7 1290 277 49 0 0 chr11 92486307 92486348 -29357508 - L1_Mus2 LINE L1 -4 6562 6522 7 1290 480 48 0 0 chr11 92486349 92486411 -29357445 - L1_Mus2 LINE L1 -193 6373 6312 7 1290 905 103 109 6 chr11 92487639 92487795 -29356061 - Lx2B LINE L1 -318 6682 6511 7 1290 479 311 64 51 chr11 92489038 92489350 -29354506 - Lx8 LINE L1 -8 7465 7150 7 1290 1217 105 6 0 chr11 92489350 92489522 -29354334 - ORR1A3 LTR MaLR 0 326 154 7 1290 295 390 42 45 chr11 92489905 92490214 -29353642 + LTR79 LTR ERVL 185 492 -35 7 1290 522 0 0 0 chr11 92491190 92491248 -29352608 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1290 222 260 13 76 chr11 92491277 92491356 -29352500 - MIRm SINE MIR -160 116 43 7 1290 30 27 0 0 chr11 92491610 92491647 -29352209 + AT_rich Low_complexity Low_complexity 1 37 0 7 1290 231 188 0 94 chr11 92491678 92491731 -29352125 - LTR88b LTR Gypsy? -123 714 667 7 1290 227 333 67 40 chr11 92491684 92491759 -29352097 - LTR88c LTR Genie? -126 736 660 7 1290 1625 113 0 0 chr11 92492268 92492507 -29351349 - L1_Mus4 LINE L1 -273 6363 6125 7 1290 2156 79 0 10 chr11 92492507 92492802 -29351054 + L1_Mus4 LINE L1 6344 6635 -1 7 1290 180 0 0 0 chr11 92493962 92493982 -29349874 + (TC)n Simple_repeat Simple_repeat 1 20 0 7 1290 1773 83 21 0 chr11 92495442 92495732 -29348124 + L1_Mur2 LINE L1 664 959 -5753 7 1290 520 53 0 0 chr11 92495731 92495806 -29348050 + L1_Mus4 LINE L1 6449 6523 -113 7 1290 635 56 46 0 chr11 92495966 92496074 -29347782 + (TCTA)n Simple_repeat Simple_repeat 3 115 0 7 1290 815 171 0 70 chr11 92496248 92496392 -29347464 + B1_Mur4 SINE Alu 5 141 -9 7 1290 207 0 0 0 chr11 92496392 92496415 -29347441 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 7 1290 815 171 0 70 chr11 92496415 92496427 -29347429 + B1_Mur4 SINE Alu 142 150 0 7 1290 200 189 0 0 chr11 92496428 92496465 -29347391 + GA-rich Low_complexity Low_complexity 4 40 0 7 1290 2949 235 37 18 chr11 92496981 92497657 -29346199 - Lx6 LINE L1 -2 7458 6770 7 1290 1908 142 17 6 chr11 92497653 92497999 -29345857 - L1_Mur1 LINE L1 -5962 1020 671 7 1290 5314 98 18 60 chr11 92498117 92498340 -29345516 + Lx3_Mus LINE L1 6200 6422 -587 7 1290 1109 70 28 0 chr11 92498340 92498483 -29345373 + B1_Mm SINE Alu 1 147 0 7 1290 5314 98 18 60 chr11 92498483 92499096 -29344760 + Lx3_Mus LINE L1 6423 7001 -8 7 1290 1095 92 0 0 chr11 92499114 92499256 -29344600 + B1_Mus1 SINE Alu 1 142 -6 7 1290 2609 239 51 11 chr11 92499332 92499995 -29343861 - Lx6 LINE L1 -685 6775 6086 7 1290 6371 199 61 192 chr11 92500000 92502032 -29341824 - Lx6 LINE L1 -1447 6013 4318 1 1290 252 0 0 0 chr11 92502032 92502060 -29341796 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1290 6371 200 41 228 chr11 92502060 92502342 -29341514 - Lx6 LINE L1 -1563 4317 4312 1 1290 346 153 42 0 chr11 92502342 92502414 -29341442 - L1Md_F2 LINE L1 -1 6581 6507 3 1290 6371 200 41 228 chr11 92502414 92502471 -29341385 - L1_Mur3 LINE L1 -1569 4311 4311 4 1290 2622 109 44 5 chr11 92502471 92502876 -29340980 - Lx2 LINE L1 -16 6981 6561 5 1290 6371 200 41 228 chr11 92502876 92504288 -29339568 - Lx6 LINE L1 -1569 4311 2868 1 1290 1269 126 15 5 chr11 92504271 92504289 -29339567 - L1_Mus3 LINE L1 -362 6276 6260 6 1290 1698 71 13 0 chr11 92504289 92504528 -29339328 - L1_Mus3 LINE L1 0 6638 6397 7 1290 1269 126 15 5 chr11 92504528 92504708 -29339148 - L1_Mus3 LINE L1 -379 6259 6077 6 1290 3033 94 7 0 chr11 92504693 92505232 -29338624 + L1_Mus3 LINE L1 5454 5997 -569 6 1290 6550 199 39 32 chr11 92505217 92506046 -29337810 - Lx6 LINE L1 -2996 2884 2068 1 1290 324 0 0 0 chr11 92506046 92506082 -29337774 + (CTG)n Simple_repeat Simple_repeat 3 38 0 8 1290 6550 202 53 30 chr11 92506082 92507237 -29336619 - Lx6 LINE L1 -3813 2067 860 1 1290 1172 329 55 16 chr11 92507232 92507895 -29335961 - Lx6 LINE L1 -7047 681 17 1 1290 4374 171 8 9 chr11 92510706 92511474 -29332382 + Lx2B LINE L1 6229 6995 -5 9 1290 200 273 0 0 chr11 92511638 92511682 -29332174 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1290 208 289 74 58 chr11 92511686 92511807 -29332049 + L2a LINE L2 3301 3423 -3 1 1290 7239 118 3 16 chr11 92512484 92513620 -29330236 - Lx LINE L1 -7 6647 5526 1 1290 218 299 0 15 chr11 92513766 92513834 -29330022 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1290 216 111 0 0 chr11 92513862 92513898 -29329958 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1290 244 288 0 0 chr11 92513988 92514061 -29329795 + L1MD LINE L1 5743 5815 -2180 1 1290 2742 137 122 78 chr11 92514760 92515479 -29328377 + RMER17A LTR ERVK 1 751 0 1 1290 182 448 0 45 chr11 92515754 92515864 -29327992 - L4 LINE RTE -395 1634 1530 1 1290 25 31 0 0 chr11 92516867 92516899 -29326957 + AT_rich Low_complexity Low_complexity 1 32 0 1 1290 324 48 0 0 chr11 92517703 92517745 -29326111 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1290 365 361 32 42 chr11 92517814 92518031 -29325825 - LTR80B LTR ERVL -369 215 1 2 1290 1004 272 170 18 chr11 92518872 92519270 -29324586 + RMER15 LTR ERVL 27 510 -65 2 1290 739 267 59 56 chr11 92519634 92519920 -29323936 + B4A SINE B4 2 288 -4 2 1290 35 24 0 0 chr11 92519930 92519972 -29323884 + AT_rich Low_complexity Low_complexity 1 42 0 2 1290 218 378 127 30 chr11 92520109 92520476 -29323380 - L4 LINE RTE -1234 795 400 2 1290 3470 125 2 0 chr11 92520476 92521004 -29322852 - Lx2A1 LINE L1 -4 7004 6476 2 1290 218 378 127 30 chr11 92521004 92521241 -29322615 - L4 LINE RTE -1630 399 133 2 1290 1060 71 43 0 chr11 92521243 92521384 -29322472 + B1_Mus2 SINE Alu 1 147 0 2 1290 32 43 0 0 chr11 92521384 92521430 -29322426 + AT_rich Low_complexity Low_complexity 1 46 0 2 1290 21 0 0 0 chr11 92522230 92522251 -29321605 + AT_rich Low_complexity Low_complexity 1 21 0 2 1290 1066 36 58 0 chr11 92522482 92522620 -29321236 + B1_Mus2 SINE Alu 1 146 -1 2 1290 25 51 0 0 chr11 92522657 92522696 -29321160 + AT_rich Low_complexity Low_complexity 1 39 0 3 1290 243 0 0 0 chr11 92523263 92523290 -29320566 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1290 455 121 0 39 chr11 92523452 92523555 -29320301 + CT-rich Low_complexity Low_complexity 1 99 0 3 1290 297 0 0 0 chr11 92523555 92523588 -29320268 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1290 186 43 0 0 chr11 92524074 92524097 -29319759 + (CAG)n Simple_repeat Simple_repeat 1 23 0 3 1290 22 56 0 0 chr11 92524742 92524778 -29319078 + AT_rich Low_complexity Low_complexity 1 36 0 3 1290 2146 200 95 33 chr11 92524986 92525525 -29318331 + RMER4B LTR ERVK 14 585 0 3 1290 217 156 0 22 chr11 92527139 92527185 -29316671 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3 1290 1332 205 146 7 chr11 92527757 92528066 -29315790 - MTD LTR MaLR 0 419 68 3 1290 296 119 17 0 chr11 92528087 92528146 -29315710 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 3 1290 640 250 0 0 chr11 92528206 92528326 -29315530 - B3 SINE B2 -89 127 8 4 1290 380 206 21 52 chr11 92528297 92528394 -29315462 - MTD LTR MaLR -327 94 1 3 1290 204 67 0 0 chr11 92528829 92528859 -29314997 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1290 527 79 0 22 chr11 92528859 92528950 -29314906 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 4 1290 217 125 18 18 chr11 92530164 92530221 -29313635 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 4 1290 303 370 24 0 chr11 92530439 92530566 -29313290 + ID_B1 SINE B4 91 220 -4 4 1290 820 91 0 0 chr11 92530589 92530699 -29313157 - Lx2A1 LINE L1 -220 6788 6679 4 1290 1134 137 25 0 chr11 92530700 92530904 -29312952 + Lx2A1 LINE L1 6788 6996 -12 4 1290 793 322 59 22 chr11 92531110 92531466 -29312390 + Lx8 LINE L1 7105 7473 0 4 1290 27 29 0 0 chr11 92531561 92531595 -29312261 + AT_rich Low_complexity Low_complexity 1 34 0 4 1290 392 306 86 101 chr11 92531596 92531811 -29312045 - B3A SINE B2 0 216 3 4 1290 25 51 0 0 chr11 92531825 92531864 -29311992 + AT_rich Low_complexity Low_complexity 1 39 0 4 1290 345 24 0 0 chr11 92532894 92532936 -29310920 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 5 1290 415 298 11 0 chr11 92532942 92533036 -29310820 - B1F2 SINE Alu -13 136 42 5 1290 396 261 113 0 chr11 92533045 92533160 -29310696 - MTEa LTR MaLR -228 151 24 5 1290 369 177 0 0 chr11 92533264 92533343 -29310513 + (TATTG)n Simple_repeat Simple_repeat 4 82 0 5 1290 368 308 50 31 chr11 92533802 92533963 -29309893 - RMER15 LTR ERVL -14 561 398 5 1290 360 0 0 0 chr11 92534207 92534247 -29309609 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1290 239 246 16 0 chr11 92534270 92534331 -29309525 + CT-rich Low_complexity Low_complexity 2 63 0 5 1290 606 93 0 0 chr11 92534415 92534501 -29309355 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 1290 838 144 195 0 chr11 92534636 92534747 -29309109 + L1_Mur1 LINE L1 2765 2880 -2997 5 1290 1014 91 28 7 chr11 92534747 92534891 -29308965 + B1_Mm SINE Alu 1 147 0 5 1290 838 144 195 0 chr11 92534891 92534974 -29308882 + L1_Mur1 LINE L1 2881 2995 -2882 5 1290 1049 84 0 0 chr11 92534972 92535114 -29308742 + L1_Mur1 LINE L1 3679 3820 -2066 5 1290 1391 78 0 20 chr11 92535108 92535304 -29308552 - L1_Mus1 LINE L1 -537 6030 5839 6 1290 4093 65 22 2 chr11 92535304 92535842 -29308014 + L1_Mus1 LINE L1 6019 6567 0 6 1290 4256 125 18 22 chr11 92535892 92536281 -29307575 + L1_Mur1 LINE L1 3812 4204 -1682 5 1290 2973 93 2 0 chr11 92536281 92536680 -29307176 - MTB LTR MaLR 0 400 1 6 161 6280 122 16 80 chr11 92536680 92537853 -29306003 - MTB-int LTR MaLR 0 1098 1 6 1291 2550 107 44 0 chr11 92537853 92538236 -29305620 - MTB LTR MaLR 0 400 1 6 1291 4256 125 18 22 chr11 92538236 92538581 -29305275 + L1_Mur1 LINE L1 4205 4543 -1343 5 1291 2207 106 6 39 chr11 92538582 92538916 -29304940 + L1_Mur1 LINE L1 5453 5775 -102 5 1291 1554 176 77 7 chr11 92538915 92539212 -29304644 + Lx4A LINE L1 6740 7057 -1 6 1291 221 196 0 18 chr11 92539229 92539286 -29304570 + (TAA)n Simple_repeat Simple_repeat 2 57 0 6 1291 406 319 64 25 chr11 92540202 92540482 -29303374 - L1MA6 LINE L1 -357 5943 5653 6 1291 406 267 137 69 chr11 92540801 92541078 -29302778 + ORR1E LTR MaLR 64 359 0 6 1291 5548 78 8 0 chr11 92542061 92542800 -29301056 - L1_Mus3 LINE L1 0 6638 5894 6 1291 2470 78 0 0 chr11 92542800 92543167 -29300689 + L1_Mus3 LINE L1 5539 5905 -733 6 1291 252 208 21 0 chr11 92543334 92543382 -29300474 + RMER15 LTR ERVL 3 51 -524 6 1291 625 258 0 91 chr11 92543458 92543633 -29300223 + B3A SINE B2 38 196 -2 6 1291 646 290 83 0 chr11 92543785 92543903 -29299953 + RMER15 LTR ERVL 367 486 -89 6 1291 321 26 0 0 chr11 92543903 92543941 -29299915 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1291 646 290 83 0 chr11 92543941 92544015 -29299841 + RMER15 LTR ERVL 487 574 -1 6 1291 21 0 0 0 chr11 92545295 92545316 -29298540 + AT_rich Low_complexity Low_complexity 1 21 0 7 1291 347 250 73 55 chr11 92546070 92546180 -29297676 + B1F2 SINE Alu 31 142 -7 7 1291 509 143 0 20 chr11 92546658 92546758 -29297098 + CT-rich Low_complexity Low_complexity 5 102 0 7 1291 216 0 0 0 chr11 92547575 92547599 -29296257 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1291 1200 111 0 0 chr11 92547733 92547913 -29295943 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1291 516 167 0 0 chr11 92547913 92548009 -29295847 + CT-rich Low_complexity Low_complexity 1 96 0 7 1291 998 110 14 0 chr11 92548014 92548159 -29295697 - B1_Mus1 SINE Alu 0 148 2 7 1291 2182 123 75 61 chr11 92548172 92548852 -29295004 - L1Md_F2 LINE L1 -1 6581 5771 7 1291 597 305 55 63 chr11 92549466 92549833 -29294023 - MTD LTR MaLR -55 364 1 7 1291 290 244 12 37 chr11 92550509 92550590 -29293266 + RSINE1 SINE B4 2 80 -85 7 1291 650 91 10 0 chr11 92550799 92550898 -29292958 + (CA)n Simple_repeat Simple_repeat 1 100 0 8 1291 507 60 0 0 chr11 92550936 92551003 -29292853 + (TATG)n Simple_repeat Simple_repeat 2 68 0 8 1291 1122 83 0 0 chr11 92551004 92551148 -29292708 - B1_Mus1 SINE Alu -2 146 3 8 1291 317 285 72 59 chr11 92554835 92555141 -29288715 + L1_Rod LINE L1 3031 3340 -2507 8 1291 605 253 119 15 chr11 92555151 92555328 -29288528 + B3 SINE B2 2 183 -10 8 1291 493 274 19 48 chr11 92555329 92555536 -29288320 + L1_Mur3 LINE L1 3333 3533 -2347 8 1291 36374 57 1 24 chr11 92555542 92561266 -29282590 + L1Md_T LINE L1 99 5586 -297 8 1291 7994 57 0 0 chr11 92561266 92562293 -29281563 + L1Md_T LINE L1 5587 6582 0 8 1291 1612 208 55 18 chr11 92562295 92562678 -29281178 + RMER1C Other Other 944 1340 -2 8 1291 189 0 0 0 chr11 92562722 92562743 -29281113 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1291 413 316 108 4 chr11 92562743 92562975 -29280881 + L1M2 LINE L1 3559 3814 -2329 8 1291 296 305 77 26 chr11 92562967 92563122 -29280734 + Lx9 LINE L1 7105 7267 -377 9 1291 425 76 15 0 chr11 92563199 92563265 -29280591 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1291 462 49 0 0 chr11 92564478 92564539 -29279317 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1291 201 39 0 0 chr11 92565038 92565064 -29278792 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1291 205 273 26 33 chr11 92567238 92567336 -29276520 + MIRm SINE MIR 83 174 -94 9 1291 330 375 6 12 chr11 92567771 92567941 -29275915 + GA-rich Low_complexity Low_complexity 2 170 0 9 1291 21 0 0 0 chr11 92568065 92568086 -29275770 + AT_rich Low_complexity Low_complexity 1 21 0 9 1291 1138 233 16 160 chr11 92569226 92569675 -29274181 + ORR1C2 LTR MaLR 1 384 0 9 1291 860 278 5 0 chr11 92570065 92570274 -29273582 + B3 SINE B2 1 210 -6 9 1291 181 98 0 47 chr11 92570319 92570362 -29273494 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 9 1291 3589 102 6 13 chr11 92570634 92571162 -29272694 - L1_Mus3 LINE L1 -2 6636 6113 1 1291 588 366 71 36 chr11 92572344 92572783 -29271073 - MLT1F LTR MaLR -84 464 11 1 1291 1228 80 0 6 chr11 92572782 92572946 -29270910 - B2_Mm2 SINE B2 -31 164 2 1 1291 276 310 111 56 chr11 92576426 92576624 -29267232 + Lx8 LINE L1 6924 7132 -341 1 1291 1987 33 0 16 chr11 92576712 92576961 -29266895 - L1Md_F3 LINE L1 -3 6581 6337 1 1291 3059 23 0 0 chr11 92576961 92577315 -29266541 + L1Md_F3 LINE L1 5988 6341 -243 1 1291 2895 267 98 14 chr11 92577312 92578196 -29265660 - RMER1C Other Other -9 1333 375 1 1291 539 285 76 0 chr11 92578241 92578385 -29265471 - RSINE1 SINE B4 0 165 11 1 1291 4884 253 47 7 chr11 92578832 92580077 -29263779 + Lx7 LINE L1 5997 7290 -406 1 1291 29023 120 16 11 chr11 92580134 92585979 -29257877 - L1_Mus2 LINE L1 0 6566 686 1 1291 311 283 60 80 chr11 92586115 92586315 -29257541 + Lx6 LINE L1 7265 7460 0 1 1291 360 0 0 0 chr11 92586468 92586508 -29257348 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1291 209 318 57 57 chr11 92586924 92586994 -29256862 - L2b LINE L2 -17 3358 3289 1 1291 519 304 9 76 chr11 92587721 92587945 -29255911 - B3 SINE B2 -6 210 2 1 1291 630 0 0 0 chr11 92588276 92588346 -29255510 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1291 203 171 0 0 chr11 92588454 92588495 -29255361 + A-rich Low_complexity Low_complexity 1 41 0 1 1291 308 374 0 0 chr11 92589425 92589524 -29254332 + LFSINE_Vert SINE SINE 9 107 -352 1 1291 280 319 19 47 chr11 92590510 92590620 -29253236 + MIRb SINE MIR 132 249 -19 1 1291 657 250 41 67 chr11 92590660 92590917 -29252939 - MTEa LTR MaLR 0 379 108 1 1291 405 153 50 30 chr11 92591307 92591408 -29252448 - Lx9 LINE L1 -7 7637 7535 1 1291 463 281 24 30 chr11 92591619 92591788 -29252068 + MER3 DNA MER1_type 9 176 -33 1 1291 21 57 0 0 chr11 92594251 92594286 -29249570 + AT_rich Low_complexity Low_complexity 1 35 0 1 1291 1143 260 90 48 chr11 92594933 92595288 -29248568 + ORR1D1 LTR MaLR 2 371 -3 1 1291 360 111 0 0 chr11 92596142 92596196 -29247660 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1291 270 0 0 0 chr11 92596541 92596571 -29247285 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1291 1421 74 16 5 chr11 92596807 92596998 -29246858 - B2_Mm2 SINE B2 -1 194 2 1 1291 468 0 0 0 chr11 92597365 92597417 -29246439 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1291 509 302 140 65 chr11 92597493 92597815 -29246041 - MLT1B LTR MaLR -44 346 1 1 1291 347 346 87 125 chr11 92597844 92598237 -29245619 + MLT1A1 LTR MaLR 1 378 -30 1 1291 1006 103 0 20 chr11 92598270 92598419 -29245437 - B1_Mm SINE Alu 0 147 2 1 1291 653 164 6 0 chr11 92598836 92598995 -29244861 + (TAGA)n Simple_repeat Simple_repeat 4 163 0 1 1291 2884 138 46 8 chr11 92600002 92600505 -29243351 + RLTR11A LTR ERVK 7 528 0 1 1291 24 0 0 0 chr11 92600602 92600626 -29243230 + AT_rich Low_complexity Low_complexity 1 24 0 1 1291 294 206 0 0 chr11 92600754 92600817 -29243039 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1291 477 90 0 0 chr11 92600825 92600892 -29242964 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1291 5790 68 5 7 chr11 92601031 92601789 -29242067 - L1Md_F2 LINE L1 -2 6580 5824 1 1291 384 277 62 56 chr11 92601895 92602090 -29241766 + Lx8 LINE L1 7270 7465 -8 1 1291 210 105 0 0 chr11 92605155 92605193 -29238663 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1291 303 333 30 89 chr11 92605195 92605363 -29238493 - MER45C DNA Tip100 0 953 796 1 1291 24 53 0 0 chr11 92606313 92606351 -29237505 + AT_rich Low_complexity Low_complexity 1 38 0 1 1291 222 306 16 90 chr11 92606452 92606483 -29237373 + PB1D7 SINE Alu 1 113 -7 1 1291 352 229 0 88 chr11 92606483 92606574 -29237282 + ID_B1 SINE B4 135 217 -7 1 1291 216 22 20 98 chr11 92607163 92607214 -29236642 + (TAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1291 911 194 168 28 chr11 92607351 92607637 -29236219 + Lx9 LINE L1 7319 7644 0 1 1291 301 329 91 6 chr11 92607639 92607804 -29236052 + L1M4 LINE L1 2283 2461 -3685 1 1291 311 226 32 0 chr11 92608156 92608218 -29235638 - ID2 SINE ID -3 80 17 1 1291 456 184 0 0 chr11 92608725 92608828 -29235028 + (TGG)n Simple_repeat Simple_repeat 1 103 0 1 1291 260 329 14 0 chr11 92608830 92608903 -29234953 - B4 SINE B4 -218 74 1 1 1291 251 54 27 0 chr11 92608912 92608949 -29234907 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1291 295 323 89 11 chr11 92608969 92609160 -29234696 + L1MA6 LINE L1 5973 6178 -122 1 1291 438 266 57 10 chr11 92609319 92609513 -29234343 + L1MC LINE L1 3209 3411 -2735 1 1291 1297 331 60 6 chr11 92609690 92609816 -29234040 + Lx8 LINE L1 6034 6167 -1306 1 1291 495 112 0 0 chr11 92609816 92609896 -29233960 + (CATA)n Simple_repeat Simple_repeat 2 81 0 1 1291 1297 314 146 7 chr11 92609896 92610414 -29233442 + Lx8 LINE L1 6168 6757 -716 1 1291 269 309 10 20 chr11 92610641 92610740 -29233116 - Lx8 LINE L1 -269 7204 7107 1 1291 288 254 141 25 chr11 92611334 92611455 -29232401 - B1F SINE Alu -2 147 13 1 1291 279 0 0 0 chr11 92611623 92611654 -29232202 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1291 307 339 31 63 chr11 92612457 92612712 -29231144 - L1_Mur3 LINE L1 -189 5691 5445 1 1291 282 73 0 0 chr11 92612853 92612894 -29230962 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1 1291 222 37 0 0 chr11 92612895 92612922 -29230934 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1 1291 294 284 61 52 chr11 92613073 92613188 -29230668 - MER58B DNA MER1_type -9 332 217 1 1291 540 316 35 0 chr11 92613463 92613634 -29230222 + B3A SINE B2 7 183 -15 1 1291 976 269 53 0 chr11 92613680 92613944 -29229912 - Lx8 LINE L1 -184 7289 7012 1 1291 290 243 30 28 chr11 92614009 92614093 -29229763 + MTE2a LTR MaLR 3 87 -292 1 1291 227 376 59 0 chr11 92614091 92614176 -29229680 + MTE2a LTR MaLR 59 148 -231 1 1291 321 301 0 12 chr11 92614254 92614338 -29229518 + Lx8 LINE L1 7068 7150 -323 1 1291 840 70 0 0 chr11 92614338 92614453 -29229403 + B1_Mm SINE Alu 32 146 -1 1 1291 381 43 0 0 chr11 92614459 92614506 -29229350 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1291 765 85 0 0 chr11 92614506 92614612 -29229244 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 1 1291 241 364 90 26 chr11 92614645 92614834 -29229022 + MT2A LTR ERVL 265 465 -68 1 1291 25 31 0 0 chr11 92615363 92615395 -29228461 + AT_rich Low_complexity Low_complexity 1 32 0 1 1291 23 68 0 0 chr11 92615796 92615840 -29228016 + AT_rich Low_complexity Low_complexity 1 44 0 1 1291 670 341 40 0 chr11 92615901 92616174 -29227682 - B4A SINE B4 -8 284 1 1 1291 26 30 0 0 chr11 92616285 92616318 -29227538 + AT_rich Low_complexity Low_complexity 1 33 0 1 1291 517 291 38 76 chr11 92616786 92617159 -29226697 + Lx7 LINE L1 7165 7678 -18 1 1291 180 0 0 0 chr11 92617185 92617205 -29226651 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1291 480 271 15 15 chr11 92618363 92618494 -29225362 - Lx7 LINE L1 -768 6928 6798 1 1291 2147 228 22 4 chr11 92618489 92618943 -29224913 - Lx6 LINE L1 -944 6516 6055 1 1291 423 0 0 0 chr11 92621032 92621079 -29222777 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1291 283 303 20 29 chr11 92621183 92621285 -29222571 + MTEa LTR MaLR 3 103 -276 1 1291 371 358 109 40 chr11 92622765 92623297 -29220559 - L2 LINE L2 -531 2888 2320 1 1291 210 352 77 94 chr11 92623514 92623865 -29219991 - L2 LINE L2 -1480 1939 1595 1 1291 1199 14 7 0 chr11 92624138 92624283 -29219573 + (TC)n Simple_repeat Simple_repeat 1 146 0 1 1291 4929 186 94 14 chr11 92624294 92625324 -29218532 - Lx4B LINE L1 -23 7035 5923 1 1291 1203 292 44 3 chr11 92627433 92627752 -29216104 + MTE2b LTR MaLR 5 336 -43 1 1291 856 302 34 42 chr11 92627974 92628330 -29215526 + Lx9 LINE L1 6994 7346 -298 1 1291 821 314 62 78 chr11 92628438 92628873 -29214983 - MT2A LTR ERVL -105 428 1 1 1291 193 316 0 0 chr11 92629721 92629778 -29214078 + L2b LINE L2 2964 3020 -355 1 1291 283 337 160 61 chr11 92630440 92630702 -29213154 - B4A SINE B4 -3 289 2 1 1291 507 303 68 18 chr11 92630708 92630930 -29212926 + MER2 DNA MER2_type 111 343 -2 1 1291 423 0 0 0 chr11 92631244 92631291 -29212565 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1291 1849 115 28 22 chr11 92631748 92632068 -29211788 + RLTRETN_Mm LTR ERVK 1 322 0 1 1291 1482 61 0 0 chr11 92632837 92633034 -29210822 - L1_Mus1 LINE L1 -480 6087 5891 1 1291 3755 58 8 0 chr11 92633034 92633513 -29210343 + L1_Mus1 LINE L1 6085 6567 0 1 1291 33 0 0 0 chr11 92633516 92633549 -29210307 + AT_rich Low_complexity Low_complexity 1 33 0 1 1291 29 0 0 0 chr11 92633725 92633754 -29210102 + AT_rich Low_complexity Low_complexity 1 29 0 1 1291 189 74 0 0 chr11 92633996 92634023 -29209833 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1291 221 83 48 48 chr11 92635912 92635975 -29207881 + T-rich Low_complexity Low_complexity 1 63 0 1 1291 306 280 232 21 chr11 92636927 92637117 -29206739 - L1M2 LINE L1 -883 5260 5031 1 1291 351 0 0 0 chr11 92637193 92637232 -29206624 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1291 198 0 0 0 chr11 92637249 92637271 -29206585 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1291 226 220 15 92 chr11 92637277 92637303 -29206553 - L1M2 LINE L1 -1248 4895 4875 1 1291 1543 173 88 52 chr11 92637303 92637687 -29206169 + RMER10B LTR ERVL 1 398 0 1 1291 226 220 15 92 chr11 92637687 92637725 -29206131 - L1M2 LINE L1 -1269 4874 4836 1 1291 271 87 72 52 chr11 92638228 92638325 -29205531 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1291 252 0 0 0 chr11 92638681 92638709 -29205147 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1291 245 377 54 20 chr11 92639024 92639173 -29204683 + MER5B DNA MER1_type 8 161 -17 1 1291 1414 87 0 5 chr11 92639197 92639406 -29204450 + L1_Mus4 LINE L1 6416 6623 -13 2 1291 229 336 106 26 chr11 92639500 92639613 -29204243 + L1M4b LINE L1 1229 1350 -5984 2 1291 32 57 0 0 chr11 92639686 92639739 -29204117 + AT_rich Low_complexity Low_complexity 1 53 0 2 1291 2599 49 65 0 chr11 92640860 92641185 -29202671 - ORR1A0 LTR MaLR 0 346 1 2 1291 13752 52 11 3 chr11 92641186 92642963 -29200893 - ORR1A0-int LTR MaLR -1 1791 2 2 1291 2873 43 3 0 chr11 92642964 92643309 -29200547 - ORR1A0 LTR MaLR 0 346 1 2 1291 773 271 74 61 chr11 92643324 92643724 -29200132 - MTD LTR MaLR -20 399 11 2 1291 1147 316 26 56 chr11 92646280 92646780 -29197076 + Lx9 LINE L1 6625 7109 -535 2 1291 182 128 0 25 chr11 92647106 92647146 -29196710 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1291 245 262 136 12 chr11 92648568 92648649 -29195207 + L2c LINE L2 3287 3377 -10 2 1291 22 35 0 0 chr11 92648728 92648757 -29195099 + AT_rich Low_complexity Low_complexity 1 29 0 2 1291 246 164 0 0 chr11 92649682 92649737 -29194119 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1291 507 78 0 0 chr11 92649736 92649813 -29194043 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1291 678 274 85 30 chr11 92650296 92650646 -29193210 + RMER2 LTR ERV1 3 443 -124 2 1291 405 0 0 0 chr11 92651833 92651878 -29191978 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1291 530 355 56 22 chr11 92652178 92652628 -29191228 + ERVL-E-int LTR ERVL 1873 2337 -3330 2 1291 379 266 9 18 chr11 92652869 92652980 -29190876 + ERVL-E-int LTR ERVL 4374 4483 -1184 2 1291 1135 294 13 16 chr11 92652980 92653360 -29190496 + MTEa LTR MaLR 1 379 0 2 1291 234 0 0 0 chr11 92653837 92653863 -29189993 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1291 236 337 9 65 chr11 92655578 92655686 -29188170 - RMER17A LTR ERVK -606 145 44 2 1291 432 37 0 0 chr11 92656609 92656663 -29187193 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1291 22 56 0 0 chr11 92656668 92656704 -29187152 + AT_rich Low_complexity Low_complexity 1 36 0 2 1291 246 95 0 0 chr11 92656942 92656984 -29186872 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 2 1291 530 399 69 27 chr11 92657023 92657358 -29186498 + MLT2E LTR ERVL 20 368 -260 2 1291 180 0 0 0 chr11 92657409 92657429 -29186427 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1291 624 177 17 17 chr11 92657435 92657613 -29186243 + CT-rich Low_complexity Low_complexity 3 180 0 2 1291 324 0 0 0 chr11 92657618 92657654 -29186202 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1291 1153 302 34 18 chr11 92658228 92658609 -29185247 + Lx8 LINE L1 6716 7102 -371 2 1291 2976 101 35 33 chr11 92658743 92659224 -29184632 + RLTR45 LTR ERVK 1 482 0 2 1291 225 102 59 39 chr11 92659276 92659327 -29184529 + A-rich Low_complexity Low_complexity 3 54 0 2 1291 222 62 0 0 chr11 92660410 92660442 -29183414 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1291 180 0 0 0 chr11 92661067 92661087 -29182769 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1291 225 0 0 0 chr11 92661406 92661431 -29182425 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1291 297 0 0 0 chr11 92661832 92661865 -29181991 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1291 195 114 0 0 chr11 92661877 92661912 -29181944 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 1291 849 258 5 9 chr11 92662776 92662991 -29180865 - B3 SINE B2 0 216 3 2 1291 870 221 63 64 chr11 92663219 92663595 -29180261 - MT2A LTR ERVL -8 593 63 2 1291 803 267 15 15 chr11 92664305 92664564 -29179292 + L1ME4a LINE L1 5628 5886 -238 2 1291 189 336 60 45 chr11 92664569 92664703 -29179153 - L2 LINE L2 -2032 1387 1252 2 1291 452 319 41 51 chr11 92666010 92666205 -29177651 + B3A SINE B2 2 194 -4 2 1291 217 286 16 0 chr11 92666897 92666960 -29176896 + GA-rich Low_complexity Low_complexity 2 65 0 2 1291 294 132 0 0 chr11 92666967 92667020 -29176836 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 2 1291 521 327 105 18 chr11 92667450 92667783 -29176073 - Lx8 LINE L1 -5 7468 7107 2 161 1358 88 0 5 chr11 92667786 92667970 -29175886 - RLTR1B LTR ERV1 -2 510 328 2 1292 2278 48 54 7 chr11 92667970 92668265 -29175591 + L1Md_F3 LINE L1 6275 6583 -1 2 1292 1134 83 34 23 chr11 92668265 92668556 -29175300 - RLTR1 LTR ERV1 -182 442 1 2 1292 292 56 0 0 chr11 92668603 92668639 -29175217 - U6 snRNA snRNA -71 36 1 2 1292 266 259 178 23 chr11 92670120 92670294 -29173562 - Charlie2a DNA MER1_type -128 2733 2533 2 1292 201 39 0 0 chr11 92670311 92670337 -29173519 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1292 485 296 248 19 chr11 92670521 92670843 -29173013 + MLT1D LTR MaLR 109 505 0 2 1292 31 26 0 0 chr11 92671198 92671236 -29172620 + AT_rich Low_complexity Low_complexity 1 38 0 2 1292 287 248 161 31 chr11 92671313 92671475 -29172381 - Charlie2a DNA MER1_type -1116 1745 1563 2 1292 350 374 71 10 chr11 92672713 92672910 -29170946 - MER20 DNA MER1_type -5 214 6 2 1292 21 0 0 0 chr11 92673190 92673211 -29170645 + AT_rich Low_complexity Low_complexity 1 21 0 2 1292 391 87 29 0 chr11 92673814 92673883 -29169973 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1292 309 100 0 0 chr11 92673889 92673939 -29169917 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1292 21 36 0 0 chr11 92674626 92674654 -29169202 + AT_rich Low_complexity Low_complexity 1 28 0 2 1292 645 253 82 115 chr11 92675012 92675526 -29168330 + Lx9 LINE L1 7133 7629 -15 2 1292 9005 100 3 16 chr11 92675793 92677932 -29165924 + L1_Mus2 LINE L1 4455 6566 0 2 1292 252 0 0 0 chr11 92678158 92678186 -29165670 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1292 460 315 93 23 chr11 92678224 92678796 -29165060 + L1MB1 LINE L1 4624 5235 -905 2 1292 306 0 0 0 chr11 92679041 92679075 -29164781 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1292 306 306 118 11 chr11 92679271 92679651 -29164205 + L1MB1 LINE L1 5716 6136 -53 2 1292 2080 180 45 4 chr11 92680960 92681477 -29162379 + Lx5 LINE L1 852 1388 -4489 2 1292 1830 157 13 28 chr11 92681485 92681873 -29161983 - Lx5 LINE L1 -938 6112 5731 2 1292 3342 152 29 129 chr11 92681871 92682848 -29161008 + Lx5 LINE L1 1736 2614 -3263 2 1292 582 142 9 0 chr11 92682838 92682951 -29160905 + MusHAL1 LINE L1 1860 1973 -739 2 1292 1788 213 58 67 chr11 92682953 92683370 -29160486 + RMER19B LTR ERVK 2 414 -488 2 1292 6729 28 0 2 chr11 92683370 92684157 -29159699 + L1Md_F2 LINE L1 5798 6582 0 2 1292 617 233 83 50 chr11 92684662 92684889 -29158967 + RMER19B LTR ERVK 380 693 -209 2 1292 10752 166 20 15 chr11 92684889 92685355 -29158501 + Lx5 LINE L1 3642 4118 -1759 2 1292 3475 23 2 0 chr11 92685355 92685750 -29158106 - MTA_Mm LTR MaLR 0 396 1 2 1292 9134 31 5 1 chr11 92685750 92686844 -29157012 - MTA_Mm-int LTR MaLR 0 1098 1 2 1292 3439 28 2 0 chr11 92686844 92687239 -29156617 - MTA_Mm LTR MaLR 0 396 1 2 1292 10752 181 45 12 chr11 92687239 92690057 -29153799 + Lx5 LINE L1 4119 7042 -8 2 1292 349 247 10 0 chr11 92690098 92690195 -29153661 - L1MA4 LINE L1 -362 5938 5841 2 1292 391 250 32 8 chr11 92690252 92690377 -29153479 + L1MA5 LINE L1 6162 6289 -11 2 1292 6716 168 56 2 chr11 92691238 92692945 -29150911 + Lx4B LINE L1 5242 7027 -31 2 1292 258 32 0 0 chr11 92692953 92692984 -29150872 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 2 1292 402 21 0 0 chr11 92693266 92693313 -29150543 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1292 4598 67 0 5 chr11 92693320 92693922 -29149934 + L1Md_F2 LINE L1 5973 6571 -11 2 1292 1011 302 14 31 chr11 92693978 92694391 -29149465 - Lx9 LINE L1 -484 7160 6755 2 1292 969 210 86 58 chr11 92694875 92695205 -29148651 + ORR1C2 LTR MaLR 45 384 -10 2 1292 405 0 0 0 chr11 92695395 92695440 -29148416 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1292 617 82 10 0 chr11 92695893 92695990 -29147866 + (TCCC)n Simple_repeat Simple_repeat 2 99 0 2 1292 210 244 85 85 chr11 92696355 92696449 -29147407 + MIRc SINE MIR 173 266 -2 2 1292 1913 201 81 21 chr11 92696960 92697429 -29146427 - Lx9 LINE L1 -747 6897 6401 2 1292 204 120 0 91 chr11 92697430 92697485 -29146371 + T-rich Low_complexity Low_complexity 2 51 0 2 1292 615 247 7 0 chr11 92697509 92697655 -29146201 + Lx9 LINE L1 7241 7387 -257 2 1292 619 64 80 18 chr11 92697656 92697768 -29146088 + L1_Mus3 LINE L1 6520 6638 0 2 1292 318 137 118 0 chr11 92697810 92697912 -29145944 + Lx9 LINE L1 7530 7643 -1 2 1292 432 324 50 40 chr11 92698121 92698343 -29145513 + RMER15 LTR ERVL 336 559 -16 2 1292 232 369 20 66 chr11 92699074 92699225 -29144631 + MIR3 SINE MIR 14 157 -51 2 1292 6583 88 9 6 chr11 92699416 92700535 -29143321 - Lx3A LINE L1 -413 6568 5454 2 1292 296 135 0 0 chr11 92700535 92700587 -29143269 + L1_Mur1 LINE L1 5218 5269 -617 2 1292 2914 47 3 3 chr11 92700588 92700972 -29142884 + L1Md_F2 LINE L1 5203 5586 -297 2 1292 7410 60 15 31 chr11 92700972 92701984 -29141872 + L1Md_F2 LINE L1 5587 6582 0 2 1292 1086 81 46 0 chr11 92701997 92702171 -29141685 + L1_Mur1 LINE L1 5255 5436 -450 2 1292 236 306 94 0 chr11 92702171 92702256 -29141600 - MTD LTR MaLR -324 95 3 2 1292 382 287 26 17 chr11 92702257 92702374 -29141482 + MLT1B LTR MaLR 73 190 -200 2 1292 888 10 0 0 chr11 92702379 92702480 -29141376 + (TTC)n Simple_repeat Simple_repeat 2 102 0 2 1292 1176 33 20 0 chr11 92702515 92702667 -29141189 - L1Md_A LINE L1 -2 6580 6426 2 1292 6008 64 24 11 chr11 92702667 92704152 -29139704 - L1Md_Gf LINE L1 -3980 1906 304 2 1292 555 248 0 16 chr11 92704152 92704479 -29139377 + CT-rich Low_complexity Low_complexity 1 321 0 2 1292 304 306 60 131 chr11 92704497 92704696 -29139160 + MLT1B LTR MaLR 190 451 -16 2 1292 393 322 51 0 chr11 92704709 92704842 -29139014 - MLT1A1 LTR MaLR -13 395 221 2 1292 22 35 0 0 chr11 92704920 92704949 -29138907 + AT_rich Low_complexity Low_complexity 1 29 0 2 1292 243 328 0 0 chr11 92704949 92705007 -29138849 - PB1D10 SINE Alu -37 80 23 2 1292 609 268 30 18 chr11 92705014 92705181 -29138675 - MLT1A1 LTR MaLR -239 169 1 2 1292 563 120 9 0 chr11 92705455 92705563 -29138293 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 1292 527 287 0 35 chr11 92705581 92705722 -29138134 - RSINE1 SINE B4 -21 144 9 2 1292 252 86 0 0 chr11 92706633 92706668 -29137188 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1292 221 380 26 53 chr11 92706917 92707031 -29136825 + L2a LINE L2 3297 3407 -19 2 1292 462 330 50 10 chr11 92707461 92707660 -29136196 - B3 SINE B2 -7 209 3 2 1292 1310 138 50 0 chr11 92708023 92708262 -29135594 - Lx2A1 LINE L1 -4 7004 6754 2 1292 1127 191 85 15 chr11 92708262 92708522 -29135334 + L1_Mm LINE L1 5419 5696 -187 3 1292 1226 41 0 7 chr11 92708771 92708919 -29134937 + B1_Mm SINE Alu 1 147 0 3 1292 239 297 42 17 chr11 92709132 92709252 -29134604 - L1M4 LINE L1 -3335 2811 2689 3 1292 267 366 0 21 chr11 92709599 92709694 -29134162 + L2 LINE L2 2680 2772 -647 3 1292 1205 327 36 11 chr11 92710181 92710543 -29133313 - MTE2b LTR MaLR -7 372 2 3 1292 586 285 51 58 chr11 92710570 92710867 -29132989 - ORR1E LTR MaLR -76 294 1 3 1292 214 195 0 0 chr11 92712065 92712106 -29131750 - L2a LINE L2 -10 3416 3376 3 1292 182 267 225 51 chr11 92712106 92712203 -29131653 - MIRm SINE MIR -8 268 107 3 1292 207 0 0 0 chr11 92713295 92713318 -29130538 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1292 332 244 24 24 chr11 92713466 92713550 -29130306 + RSINE1 SINE B4 82 165 0 3 1292 255 61 0 0 chr11 92713895 92713928 -29129928 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1292 180 0 0 0 chr11 92715050 92715070 -29128786 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 3 1292 767 330 102 16 chr11 92715601 92715915 -29127941 - MLT1A0 LTR MaLR -2 363 23 3 1292 219 114 0 0 chr11 92716078 92716113 -29127743 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 3 1292 7685 44 2 2 chr11 92716257 92717466 -29126390 - L1Md_F2 LINE L1 -3 6579 5372 3 1292 2026 52 60 4 chr11 92718278 92718547 -29125309 + L1_Mus1 LINE L1 6284 6567 0 3 1292 335 349 46 34 chr11 92719090 92719265 -29124591 - MLT1K LTR MaLR -10 585 409 3 1292 702 35 0 0 chr11 92719283 92719368 -29124488 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1292 698 303 45 91 chr11 92719677 92719964 -29123892 + B4A SINE B4 19 292 0 3 1292 468 193 0 0 chr11 92719965 92720074 -29123782 + (CA)n Simple_repeat Simple_repeat 2 110 0 3 1292 306 265 21 90 chr11 92720752 92720921 -29122935 - MTEa LTR MaLR -4 375 216 3 1292 250 255 39 0 chr11 92721322 92721373 -29122483 + tRNA-Ala-GCA tRNA tRNA 15 67 -8 3 1292 1012 211 50 0 chr11 92721476 92721675 -29122181 + ORR1B2 LTR MaLR 1 209 -158 3 1292 2042 255 103 18 chr11 92721675 92722747 -29121109 - Lx6 LINE L1 -124 7572 6395 3 1292 367 179 15 0 chr11 92722747 92722814 -29121042 + Lx6 LINE L1 6347 6414 -1046 3 1292 2047 132 53 20 chr11 92722885 92723240 -29120616 - Lx2B LINE L1 -1 6999 6633 3 1292 30391 80 19 4 chr11 92723279 92728479 -29115377 + L1Md_F2 LINE L1 309 5586 -297 3 1292 7563 62 4 7 chr11 92728480 92729459 -29114397 + L1Md_F2 LINE L1 5588 6563 -19 3 1292 22 56 0 0 chr11 92729462 92729498 -29114358 + AT_rich Low_complexity Low_complexity 1 36 0 3 1292 2756 67 0 0 chr11 92729771 92730117 -29113739 - ORR1A1 LTR MaLR 0 346 1 3 1292 331 171 114 0 chr11 92730230 92730300 -29113556 + Lx7 LINE L1 6241 6318 -1378 3 1292 2237 225 23 105 chr11 92731506 92732155 -29111701 - RMER20B LTR ERVK -2 625 30 3 1292 244 322 125 55 chr11 92732198 92732527 -29111329 - Lx8 LINE L1 -121 7352 7001 3 1292 270 385 21 36 chr11 92732610 92732750 -29111106 - B4A SINE B4 -151 141 4 3 1292 324 64 0 0 chr11 92733599 92733646 -29110210 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 1292 239 261 90 64 chr11 92733652 92733840 -29110016 + L1MB2 LINE L1 5957 6149 -22 3 1292 484 333 53 0 chr11 92733859 92734009 -29109847 + RSINE1 SINE B4 4 161 -4 3 1292 27 0 0 0 chr11 92734012 92734039 -29109817 + AT_rich Low_complexity Low_complexity 1 27 0 3 1292 292 336 177 15 chr11 92734694 92734824 -29109032 - LTR33 LTR ERVL -333 182 32 3 1292 498 250 17 0 chr11 92735011 92735077 -29108779 + polypurine Low_complexity Low_complexity 1 68 0 3 1292 1281 45 11 11 chr11 92735077 92735255 -29108601 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1292 498 250 17 0 chr11 92735255 92735364 -29108492 + GA-rich Low_complexity Low_complexity 69 178 0 3 1292 5101 129 123 9 chr11 92736270 92736604 -29107252 + RMER17B LTR ERVK 2 349 -609 3 1292 719 78 10 0 chr11 92736604 92736707 -29107149 + (TC)n Simple_repeat Simple_repeat 2 105 0 3 1292 5101 129 123 9 chr11 92736707 92737231 -29106625 + RMER17B LTR ERVK 350 957 -1 3 1292 372 22 0 0 chr11 92737231 92737276 -29106580 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1292 486 0 0 0 chr11 92737277 92737331 -29106525 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1292 4821 150 32 15 chr11 92737795 92738618 -29105238 - Lx4A LINE L1 0 7058 6222 3 1292 5059 11 0 2 chr11 92738741 92739348 -29104508 + L1Md_A LINE L1 4981 5586 -297 3 1292 8870 13 0 0 chr11 92739348 92740344 -29103512 + L1Md_A LINE L1 5587 6582 0 3 1292 662 141 17 63 chr11 92741420 92741594 -29102262 + Lx9 LINE L1 7478 7643 -1 3 1292 815 298 13 50 chr11 92741652 92742114 -29101742 + L1MB8 LINE L1 5633 6077 -101 3 1292 595 104 24 8 chr11 92742124 92742250 -29101606 - L1_Mus4 LINE L1 0 6636 6509 3 1292 316 419 57 28 chr11 92742439 92742864 -29100992 + LTR84b LTR ERVL 294 730 -31 3 1292 234 267 54 75 chr11 92743280 92743373 -29100483 + ID_B1 SINE B4 129 219 -5 3 1292 687 304 66 59 chr11 92743956 92744073 -29099783 + ORR1E LTR MaLR 3 117 -242 3 1292 2030 154 45 54 chr11 92744073 92744498 -29099358 - MTC LTR MaLR 0 421 1 3 1292 687 304 66 59 chr11 92744498 92744684 -29099172 + ORR1E LTR MaLR 118 308 -51 3 1292 294 191 21 31 chr11 92744729 92744826 -29099030 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 1292 327 260 0 0 chr11 92744828 92744924 -29098932 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 1292 217 226 38 0 chr11 92744971 92745024 -29098832 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 3 1292 839 286 58 118 chr11 92745072 92745469 -29098387 - MTE2a LTR MaLR -6 373 1 3 1292 1092 57 0 0 chr11 92745480 92745620 -29098236 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 3 1292 1031 82 8 0 chr11 92745621 92745755 -29098101 - B1_Mus2 SINE Alu -12 135 1 3 1292 210 384 35 42 chr11 92748055 92748199 -29095657 - MIRb SINE MIR -106 162 20 3 1292 207 0 0 0 chr11 92749518 92749541 -29094315 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1292 423 312 85 24 chr11 92751924 92752624 -29091232 - L1MA4 LINE L1 -400 5900 5153 3 1292 3095 229 32 24 chr11 92752789 92753606 -29090250 + Lx5 LINE L1 5903 7047 -3 3 1292 357 24 0 0 chr11 92753660 92753702 -29090154 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 3 1292 230 291 31 16 chr11 92754002 92754131 -29089725 - L1MB7 LINE L1 -10 6174 6044 3 1292 540 259 64 75 chr11 92754131 92754319 -29089537 + B3A SINE B2 9 194 -1 3 1292 285 291 105 29 chr11 92754326 92754535 -29089321 - L1MB5 LINE L1 -130 6044 5820 3 1292 21 36 0 0 chr11 92754580 92754608 -29089248 + AT_rich Low_complexity Low_complexity 1 28 0 3 1292 273 119 0 0 chr11 92754622 92754664 -29089192 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1292 284 274 0 27 chr11 92754759 92754834 -29089022 - RMER15 LTR ERVL -109 466 394 3 1292 424 308 146 42 chr11 92754833 92755182 -29088674 - MTE2a LTR MaLR -5 374 18 3 1292 332 296 9 18 chr11 92755201 92755311 -29088545 - Lx8 LINE L1 -210 7263 7155 3 1292 1172 101 96 0 chr11 92755700 92755878 -29087978 + B2_Mm2 SINE B2 1 195 0 3 1292 224 59 29 0 chr11 92755878 92755912 -29087944 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1292 3881 212 22 107 chr11 92757212 92757321 -29086535 - RMER1A Other Other -14 1016 894 3 1292 252 0 0 0 chr11 92757321 92757349 -29086507 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1292 3881 212 22 107 chr11 92757349 92757373 -29086483 - RMER1A Other Other -137 893 871 3 1292 264 30 0 0 chr11 92757373 92757406 -29086450 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 1292 3881 216 23 103 chr11 92757406 92758430 -29085426 - RMER1A Other Other -160 870 3 3 1292 953 294 88 9 chr11 92758448 92758943 -29084913 - RMER1A Other Other -556 510 45 3 1292 770 310 10 6 chr11 92759047 92759359 -29084497 + L1_Mur3 LINE L1 5056 5368 -512 3 1292 219 69 0 0 chr11 92759471 92759500 -29084356 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1292 198 0 0 0 chr11 92761171 92761193 -29082663 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 3 1292 641 344 86 79 chr11 92761210 92761852 -29082004 + Arthur1B DNA Tip100 1 646 -579 3 1292 431 246 92 0 chr11 92762142 92762268 -29081588 - MTE2a LTR MaLR -24 355 219 3 1292 1364 304 26 21 chr11 92762281 92762809 -29081047 - Lx9 LINE L1 -800 6844 6314 3 1292 389 267 0 0 chr11 92762813 92762899 -29080957 + B3 SINE B2 54 139 -77 3 1292 459 0 0 0 chr11 92762922 92762973 -29080883 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1292 324 148 0 0 chr11 92763177 92763238 -29080618 + (TTTTG)n Simple_repeat Simple_repeat 5 65 0 3 1292 449 302 146 33 chr11 92763832 92764106 -29079750 + L2a LINE L2 3122 3426 0 3 1292 252 0 0 0 chr11 92764682 92764710 -29079146 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1292 444 37 0 0 chr11 92764918 92764972 -29078884 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1292 720 373 26 35 chr11 92765102 92765413 -29078443 + LTR16A LTR ERVL 3 310 -141 3 1292 1613 246 65 28 chr11 92766033 92766430 -29077426 - MTD LTR MaLR 0 419 8 3 1292 330 45 0 0 chr11 92768480 92768524 -29075332 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1292 527 233 199 27 chr11 92769268 92769524 -29074332 - Lx6 LINE L1 -26 7434 7135 3 1292 762 207 7 0 chr11 92769912 92770047 -29073809 - ETnERV2-int LTR ERVK -204 7202 7067 3 1292 333 117 36 26 chr11 92770095 92770193 -29073663 + B1_Mur3 SINE Alu 19 149 0 3 1292 2600 76 8 8 chr11 92770249 92770607 -29073249 - L1_Mus1 LINE L1 0 6567 6210 3 1292 262 59 0 0 chr11 92770607 92770641 -29073215 + L1_Mus1 LINE L1 5849 5882 -685 3 1292 22 35 0 0 chr11 92771298 92771327 -29072529 + AT_rich Low_complexity Low_complexity 1 29 0 3 1292 1477 293 18 59 chr11 92771904 92772703 -29071153 + RMER1B Other Other 8 524 -542 3 1292 21 0 0 0 chr11 92772876 92772897 -29070959 + AT_rich Low_complexity Low_complexity 1 21 0 4 1292 567 303 21 21 chr11 92773186 92773378 -29070478 + Lx9 LINE L1 6545 6736 -908 4 1292 2641 186 95 16 chr11 92773380 92774067 -29069789 + Lx9 LINE L1 6903 7643 -1 4 1292 22 35 0 0 chr11 92775010 92775039 -29068817 + AT_rich Low_complexity Low_complexity 1 29 0 4 1292 563 88 11 0 chr11 92775483 92775574 -29068282 + (TC)n Simple_repeat Simple_repeat 2 93 0 4 1292 207 366 97 13 chr11 92775921 92776076 -29067780 + MIRb SINE MIR 16 183 -85 4 1292 212 186 17 0 chr11 92777345 92777404 -29066452 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 4 1292 647 305 115 26 chr11 92777411 92777637 -29066219 - B4A SINE B4 0 292 47 4 1292 282 29 0 0 chr11 92778159 92778194 -29065662 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1292 27 0 0 0 chr11 92778198 92778225 -29065631 + AT_rich Low_complexity Low_complexity 1 27 0 4 1292 11931 23 6 0 chr11 92778569 92780647 -29063209 - L1Md_A LINE L1 -1 6581 4490 4 1292 1612 27 0 0 chr11 92780650 92780838 -29063018 - B2_Mm1a SINE B2 -4 189 2 4 1292 243 0 0 0 chr11 92782599 92782626 -29061230 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1292 222 37 0 0 chr11 92784674 92784701 -29059155 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1292 456 352 38 14 chr11 92785473 92785686 -29058170 + B4A SINE B4 71 288 -4 4 1292 512 56 0 14 chr11 92785690 92785763 -29058093 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1292 5044 46 0 0 chr11 92786259 92786873 -29056983 + L1Md_F3 LINE L1 5954 6567 -17 4 1292 188 35 35 0 chr11 92786877 92786906 -29056950 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1292 475 336 111 52 chr11 92786919 92787400 -29056456 - MLT2B2 LTR ERVL -18 537 32 4 1292 32 67 0 0 chr11 92787632 92787692 -29056164 + AT_rich Low_complexity Low_complexity 1 60 0 4 1292 201 268 0 18 chr11 92787757 92787814 -29056042 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 4 1292 361 304 233 51 chr11 92787831 92788067 -29055789 - B4 SINE B4 -11 281 3 4 1292 23 0 0 0 chr11 92788220 92788243 -29055613 + AT_rich Low_complexity Low_complexity 1 23 0 4 1292 615 48 0 0 chr11 92789878 92789961 -29053895 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 1292 393 22 0 0 chr11 92790760 92790806 -29053050 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1292 284 269 69 0 chr11 92791404 92791486 -29052370 + ID4_ SINE ID 4 90 -62 4 1292 307 354 21 0 chr11 92792438 92792534 -29051322 - Charlie1 DNA MER1_type -2683 98 1 4 1292 248 348 136 0 chr11 92792652 92792770 -29051086 - MIRc SINE MIR -128 140 7 4 1292 422 301 31 45 chr11 92793072 92793295 -29050561 - L1MC4a LINE L1 -1195 6847 6628 4 1292 25 0 0 0 chr11 92793465 92793490 -29050366 + AT_rich Low_complexity Low_complexity 1 25 0 4 1292 459 0 0 0 chr11 92793764 92793815 -29050041 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1292 531 294 76 56 chr11 92793829 92794246 -29049610 - RMER15 LTR ERVL -65 510 2 4 1292 477 315 19 8 chr11 92795470 92795631 -29048225 - MIR3 SINE MIR -72 204 35 4 1292 360 130 0 0 chr11 92795949 92796018 -29047838 + (TCC)n Simple_repeat Simple_repeat 2 70 0 4 1292 483 306 64 53 chr11 92796052 92796428 -29047428 - L1M2 LINE L1 -578 5734 5355 4 1292 1732 162 25 99 chr11 92797335 92797739 -29046117 - ORR1C1 LTR MaLR -4 374 1 4 1292 624 27 0 0 chr11 92797856 92797930 -29045926 + (TTA)n Simple_repeat Simple_repeat 3 76 0 4 1292 838 109 14 7 chr11 92797986 92798133 -29045723 - L1_Mus3 LINE L1 -2 6636 6489 4 1292 678 207 11 6 chr11 92798275 92798450 -29045406 + CT-rich Low_complexity Low_complexity 2 177 0 4 1292 1054 248 92 4 chr11 92798553 92798824 -29045032 - Lx5 LINE L1 -278 6772 6478 4 161 3399 151 25 10 chr11 92798829 92799437 -29044419 + L1_Mur2 LINE L1 4095 4711 -1166 4 1293 2026 180 75 20 chr11 92799864 92800318 -29043538 + L1_Mur2 LINE L1 4684 5162 -715 4 1293 451 289 100 50 chr11 92801195 92801395 -29042461 + MER20 DNA MER1_type 1 210 -9 4 1293 237 309 76 116 chr11 92801521 92801693 -29042163 + MLT1H2 LTR MaLR 325 489 0 4 1293 180 0 0 0 chr11 92802087 92802107 -29041749 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 4 1293 31 44 0 0 chr11 92802872 92802917 -29040939 + AT_rich Low_complexity Low_complexity 1 45 0 4 1293 26 30 0 0 chr11 92803356 92803389 -29040467 + AT_rich Low_complexity Low_complexity 1 33 0 4 1293 405 0 0 0 chr11 92803645 92803690 -29040166 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1293 304 316 110 47 chr11 92803888 92804187 -29039669 - L1M5 LINE L1 -541 5699 5382 4 1293 942 9 0 0 chr11 92804742 92804849 -29039007 + (TC)n Simple_repeat Simple_repeat 1 107 0 4 1293 255 31 0 0 chr11 92804849 92804880 -29038976 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1293 464 312 19 13 chr11 92805026 92805182 -29038674 + RSINE1 SINE B4 2 158 -7 4 1293 672 48 0 0 chr11 92805210 92805294 -29038562 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1293 321 330 77 53 chr11 92805449 92805695 -29038161 - L1M5 LINE L1 -2367 3779 3528 4 1293 24 32 0 0 chr11 92806408 92806439 -29037417 + AT_rich Low_complexity Low_complexity 1 31 0 4 1293 1255 111 16 21 chr11 92806521 92806715 -29037141 + B2_Mm2 SINE B2 3 195 0 4 1293 372 94 0 0 chr11 92806718 92806771 -29037085 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 4 1293 200 270 174 50 chr11 92808047 92808168 -29035688 - MIRc SINE MIR -117 151 16 4 1293 1006 224 194 9 chr11 92808230 92808545 -29035311 - ORR1D1 LTR MaLR 0 374 2 4 1293 363 96 0 0 chr11 92808565 92808617 -29035239 + (CCCCCT)n Simple_repeat Simple_repeat 3 54 0 4 1293 186 43 0 0 chr11 92811153 92811176 -29032680 + (TAA)n Simple_repeat Simple_repeat 3 25 0 4 1293 420 20 0 0 chr11 92812181 92812230 -29031626 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1293 600 279 159 0 chr11 92812258 92812466 -29031390 - L1MD2 LINE L1 -196 6163 5923 4 1293 27 0 0 0 chr11 92814250 92814277 -29029579 + AT_rich Low_complexity Low_complexity 1 27 0 4 1293 247 195 17 26 chr11 92814321 92814437 -29029419 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1293 356 43 56 14 chr11 92814797 92814868 -29028988 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 4 1293 916 66 14 7 chr11 92815482 92815620 -29028236 + Lx LINE L1 6513 6651 -3 4 1293 743 291 83 4 chr11 92815944 92816172 -29027684 - Lx8 LINE L1 -189 7284 7039 4 1293 709 312 12 0 chr11 92816181 92816354 -29027502 + 7SLRNA srpRNA srpRNA 50 224 -90 4 1293 422 259 99 14 chr11 92816356 92816497 -29027359 - Lx8 LINE L1 -449 7024 6872 4 1293 818 279 33 20 chr11 92817279 92817524 -29026332 - Lx8 LINE L1 -152 7321 7074 4 1293 673 192 0 0 chr11 92817570 92817690 -29026166 + MTC LTR MaLR 1 120 -301 4 1293 255 196 0 67 chr11 92817711 92817771 -29026085 + MTC LTR MaLR 105 160 -261 4 1293 192 77 0 0 chr11 92818853 92818879 -29024977 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 4 1293 6112 19 0 0 chr11 92819099 92819846 -29024010 + L1Md_T LINE L1 5537 6285 -297 4 1293 693 344 87 14 chr11 92820172 92820529 -29023327 + Tigger9b DNA MER2_type 194 576 -48 4 1293 490 311 116 28 chr11 92820592 92820910 -29022946 - L1MD3 LINE L1 -516 7479 7134 4 1293 2580 49 61 0 chr11 92820938 92821264 -29022592 + ORR1A1 LTR MaLR 1 346 0 4 1293 257 270 101 75 chr11 92821391 92821579 -29022277 + L1MC4a LINE L1 7473 7665 -217 4 1293 183 423 15 0 chr11 92821595 92821725 -29022131 - MIRb SINE MIR -26 242 111 4 1293 224 354 86 80 chr11 92822326 92822501 -29021355 + MIRb SINE MIR 36 211 -57 4 1293 291 296 0 125 chr11 92823178 92823290 -29020566 + PB1D10 SINE Alu 20 117 0 4 1293 823 82 15 0 chr11 92823303 92823437 -29020419 + (GAGAA)n Simple_repeat Simple_repeat 3 138 0 4 1293 5142 43 2 0 chr11 92823471 92824095 -29019761 + L1Md_F3 LINE L1 5958 6582 -2 4 1293 259 320 141 31 chr11 92824220 92824610 -29019246 + L1MC4 LINE L1 7238 7670 -372 4 1293 28 29 0 0 chr11 92824867 92824902 -29018954 + AT_rich Low_complexity Low_complexity 1 35 0 4 1293 254 298 19 19 chr11 92824957 92825063 -29018793 + MLT2D LTR ERVL 14 119 -295 4 1293 297 0 0 0 chr11 92825104 92825137 -29018719 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1293 24 77 0 0 chr11 92825284 92825336 -29018520 + AT_rich Low_complexity Low_complexity 1 52 0 4 1293 1987 227 14 31 chr11 92825557 92825975 -29017881 + Lx6 LINE L1 7032 7442 -18 4 1293 1843 202 48 12 chr11 92825971 92826386 -29017470 - Lx2B LINE L1 0 7000 6571 4 1293 2707 87 5 0 chr11 92826446 92826826 -29017030 + L1_Mus3 LINE L1 6255 6636 -2 4 1293 767 226 181 9 chr11 92827516 92827726 -29016130 + ORR1D2 LTR MaLR 125 370 0 4 1293 1491 68 39 5 chr11 92829100 92829308 -29014548 + Lx LINE L1 6287 6501 -153 4 1293 817 123 0 0 chr11 92829513 92829651 -29014205 + Lx LINE L1 6515 6652 -2 4 1293 2821 19 0 0 chr11 92830113 92830435 -29013421 - RLTRETN_Mm LTR ERVK 0 322 1 4 1293 181 301 51 95 chr11 92831505 92831663 -29012193 - L2a LINE L2 -78 3348 3198 4 1293 250 250 0 0 chr11 92831705 92831773 -29012083 + Lx7 LINE L1 7238 7305 -391 4 1293 672 139 0 0 chr11 92831807 92831951 -29011905 + (GA)n Simple_repeat Simple_repeat 1 144 0 4 1293 21 0 0 0 chr11 92833334 92833355 -29010501 + AT_rich Low_complexity Low_complexity 1 21 0 4 1293 274 304 164 42 chr11 92833553 92833718 -29010138 + LTR16A LTR ERVL 30 214 -237 4 1293 548 247 98 93 chr11 92834361 92834575 -29009281 + B3 SINE B2 2 216 0 4 1293 573 15 0 0 chr11 92835027 92835093 -29008763 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1293 262 318 16 16 chr11 92835145 92835273 -29008583 + HERV16-int LTR ERVL 1919 2046 -2950 4 1293 245 238 94 35 chr11 92835739 92835909 -29007947 - L1MDb LINE L1 -5165 1244 1065 4 1293 342 315 13 47 chr11 92836234 92836384 -29007472 + Lx8 LINE L1 7078 7222 -251 4 1293 443 276 71 25 chr11 92837435 92837632 -29006224 + Lx9 LINE L1 7298 7503 -141 5 1293 30 0 0 0 chr11 92837752 92837782 -29006074 + AT_rich Low_complexity Low_complexity 1 30 0 5 1293 489 249 93 39 chr11 92837911 92838116 -29005740 + B3 SINE B2 1 216 0 5 1293 293 349 63 35 chr11 92838140 92838425 -29005431 + L1M5 LINE L1 4792 5084 -1062 5 1293 387 323 53 15 chr11 92838601 92838733 -29005123 + ID_B1 SINE B4 80 216 -8 5 1293 212 233 0 0 chr11 92838739 92838782 -29005074 + GA-rich Low_complexity Low_complexity 3 45 0 5 1293 467 295 124 46 chr11 92838854 92839071 -29004785 - ORR1E LTR MaLR -120 239 6 5 1293 711 194 0 37 chr11 92839096 92839195 -29004661 + B1_Mur4 SINE Alu 1 99 -51 5 1293 558 103 0 0 chr11 92839195 92839282 -29004574 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1293 893 64 0 8 chr11 92839282 92839407 -29004449 + (GA)n Simple_repeat Simple_repeat 2 126 0 5 1293 711 194 0 37 chr11 92839407 92839440 -29004416 + B1_Mur4 SINE Alu 100 128 -22 5 1293 684 36 0 0 chr11 92839579 92839662 -29004194 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 5 1293 518 133 11 0 chr11 92840717 92840807 -29003049 - Lx3C LINE L1 -688 5198 5108 5 1293 7168 145 16 6 chr11 92840804 92842482 -29001374 + Lx3C LINE L1 5198 6894 -82 5 1293 11425 156 3 1 chr11 92842480 92843351 -29000505 + Lx2 LINE L1 3860 4733 -1150 5 1293 311 0 26 0 chr11 92843351 92843390 -29000466 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1293 11425 137 7 3 chr11 92843390 92845280 -28998576 + Lx2 LINE L1 4734 6634 -363 5 1293 1334 135 18 0 chr11 92845280 92845509 -28998347 + Lx2 LINE L1 6765 6997 0 5 1293 32 26 0 0 chr11 92845566 92845605 -28998251 + AT_rich Low_complexity Low_complexity 1 39 0 5 1293 765 62 0 58 chr11 92845809 92845964 -28997892 + (TTCTC)n Simple_repeat Simple_repeat 4 149 0 5 1293 646 299 46 23 chr11 92845967 92846183 -28997673 - ID_B1 SINE B4 0 224 4 5 1293 185 344 130 35 chr11 92847295 92847464 -28996392 - MIRb SINE MIR -28 240 56 5 1293 948 0 45 0 chr11 92848862 92848994 -28994862 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 5 1293 316 238 24 8 chr11 92850552 92850675 -28993181 - Lx9 LINE L1 -2 7642 7518 5 1293 414 39 0 0 chr11 92850675 92850727 -28993129 + (CATA)n Simple_repeat Simple_repeat 3 54 0 5 1293 390 91 0 0 chr11 92851283 92851338 -28992518 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1293 310 240 29 0 chr11 92851372 92851476 -28992380 - HAL1 LINE L1 -136 2371 2265 5 1293 459 0 0 0 chr11 92851657 92851708 -28992148 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1293 341 325 16 40 chr11 92851974 92852221 -28991635 - HAL1 LINE L1 -800 1707 1467 5 1293 534 31 0 0 chr11 92852255 92852319 -28991537 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1293 1089 81 0 0 chr11 92852319 92852455 -28991401 - B1_Mus2 SINE Alu -10 137 2 5 1293 513 160 0 0 chr11 92852611 92852633 -28991223 + polypyrimidine Low_complexity Low_complexity 74 95 0 5 1293 1116 133 0 0 chr11 92852633 92852813 -28991043 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1293 513 160 0 0 chr11 92852813 92852884 -28990972 + polypyrimidine Low_complexity Low_complexity 3 73 0 5 1293 324 292 146 0 chr11 92852923 92852940 -28990916 - HAL1 LINE L1 -1032 1475 1451 5 1293 588 84 21 0 chr11 92852940 92853035 -28990821 - L1_Mus3 LINE L1 -4 6634 6538 5 1293 324 292 146 0 chr11 92853035 92853147 -28990709 - HAL1 LINE L1 -1057 1450 1328 5 1293 4032 94 0 60 chr11 92853739 92854352 -28989504 - L1_Mus1 LINE L1 -1 6566 5991 5 1293 3151 67 0 0 chr11 92854356 92854852 -28989004 + L1_Mus1 LINE L1 5507 6002 -564 5 1293 419 336 0 0 chr11 92854889 92855005 -28988851 + MTEa LTR MaLR 8 123 -236 5 1293 441 234 29 88 chr11 92855028 92855164 -28988692 + MTEa LTR MaLR 228 355 -24 5 1293 184 209 0 65 chr11 92855278 92855324 -28988532 - MIRm SINE MIR -30 246 204 5 1293 507 350 33 56 chr11 92855428 92855788 -28988068 - L2 LINE L2 -862 2557 2206 5 1293 538 261 173 15 chr11 92856205 92856407 -28987449 + B4 SINE B4 6 239 -53 5 1293 183 80 0 0 chr11 92856423 92856448 -28987408 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1293 182 157 23 57 chr11 92856882 92856970 -28986886 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1293 603 160 28 6 chr11 92856984 92857160 -28986696 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1293 438 179 29 6 chr11 92857186 92857360 -28986496 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1293 345 242 0 0 chr11 92857619 92857710 -28986146 + (CATA)n Simple_repeat Simple_repeat 2 92 0 5 1293 410 283 0 0 chr11 92858522 92858621 -28985235 + RSINE1 SINE B4 29 127 -38 5 1293 1462 39 0 0 chr11 92858790 92858968 -28984888 + B2_Mm1t SINE B2 4 181 -12 5 1293 492 321 76 12 chr11 92859298 92859626 -28984230 + L1MC4 LINE L1 7397 7745 -297 5 1293 274 242 63 0 chr11 92859867 92859962 -28983894 + B1F SINE Alu 20 120 -29 5 1293 313 234 148 35 chr11 92859957 92860072 -28983784 + MTC-int LTR MaLR 309 436 -822 5 1293 244 244 0 0 chr11 92860062 92860107 -28983749 + ID_B1 SINE B4 148 192 -32 5 1293 324 0 0 0 chr11 92860208 92860244 -28983612 + (CATA)n Simple_repeat Simple_repeat 1 36 0 5 1293 375 308 84 48 chr11 92860677 92860844 -28983012 + MIR SINE MIR 34 206 -56 5 1293 521 138 11 0 chr11 92861206 92861300 -28982556 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 1293 504 0 0 0 chr11 92861399 92861455 -28982401 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1293 4038 46 4 2 chr11 92861834 92862334 -28981522 + L1Md_F3 LINE L1 6072 6572 -12 5 1293 203 340 54 48 chr11 92864043 92864210 -28979646 - MIRb SINE MIR -36 232 65 5 1293 316 304 259 0 chr11 92864387 92864499 -28979357 - B3A SINE B2 -30 168 28 5 1293 851 284 186 12 chr11 92864511 92864850 -28979006 - MTD LTR MaLR -21 398 1 5 1293 737 166 172 0 chr11 92865844 92865989 -28977867 - URR1B DNA MER1_type -55 170 1 5 1293 334 242 122 41 chr11 92865989 92866016 -28977840 + CYRA11_Mm Unknown Y-chromosome 232 417 -200 5 1293 537 99 0 0 chr11 92866511 92866592 -28977264 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1293 297 0 0 0 chr11 92866592 92866624 -28977232 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1293 356 328 108 86 chr11 92867260 92867631 -28976225 - MLT1H LTR MaLR 0 549 171 5 1293 798 309 92 24 chr11 92867639 92867967 -28975889 + MER57E1 LTR ERV1 19 368 -4 5 1293 452 303 68 62 chr11 92868222 92868521 -28975335 + MTEb LTR MaLR 65 379 0 5 1293 1931 246 24 16 chr11 92868704 92869277 -28974579 + L1_Mur3 LINE L1 4542 5119 -761 5 1293 256 301 87 58 chr11 92870329 92870537 -28973319 - MIRc SINE MIR -32 236 23 5 1293 194 355 25 25 chr11 92870913 92870994 -28972862 + MIRb SINE MIR 24 104 -164 5 1293 542 283 14 14 chr11 92871019 92871166 -28972690 - B1F2 SINE Alu -1 148 2 5 1293 244 328 29 43 chr11 92871172 92871312 -28972544 + MIR SINE MIR 93 230 -32 5 1293 687 364 60 12 chr11 92871411 92871742 -28972114 - MLT1A0 LTR MaLR 0 365 19 5 1293 558 306 54 79 chr11 92871942 92872258 -28971598 + MLT2C1 LTR ERVL 13 320 -77 5 1293 627 236 249 66 chr11 92876027 92876247 -28967609 + B4 SINE B4 8 274 -18 5 1293 468 0 0 0 chr11 92876247 92876299 -28967557 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1293 627 236 249 66 chr11 92876299 92876319 -28967537 + B4 SINE B4 275 292 0 5 1293 483 263 75 0 chr11 92876908 92877094 -28966762 - MER33 DNA MER1_type 0 324 125 5 1293 456 150 21 75 chr11 92878155 92878342 -28965514 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 5 1293 230 301 96 0 chr11 92878431 92878514 -28965342 + MIR3 SINE MIR 110 200 -8 5 1293 426 20 0 0 chr11 92879868 92879919 -28963937 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1293 955 338 125 18 chr11 92879946 92880435 -28963421 + MER34A1 LTR ERV1 47 587 0 5 1293 237 33 0 0 chr11 92881052 92881082 -28962774 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1293 297 0 0 0 chr11 92881082 92881114 -28962742 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1293 362 290 28 21 chr11 92881360 92881501 -28962355 + GA-rich Low_complexity Low_complexity 4 145 0 5 1293 252 0 0 0 chr11 92881546 92881574 -28962282 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1293 224 420 80 9 chr11 92881672 92881785 -28962071 + L2b LINE L2 3253 3373 -2 5 1293 395 315 67 59 chr11 92881810 92881945 -28961911 + ID_B1 SINE B4 82 217 -7 5 1293 190 95 0 45 chr11 92881954 92881998 -28961858 + (TAA)n Simple_repeat Simple_repeat 1 42 0 5 1293 4327 50 43 28 chr11 92883080 92883658 -28960198 - LTRIS_Mus LTR ERV1 0 587 1 5 1293 22 70 0 0 chr11 92884410 92884453 -28959403 + AT_rich Low_complexity Low_complexity 1 43 0 5 1293 630 261 152 6 chr11 92884477 92884518 -28959338 - B3 SINE B2 -13 203 163 5 1293 288 0 0 0 chr11 92884518 92884550 -28959306 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1293 630 261 152 6 chr11 92884550 92884685 -28959171 - B3 SINE B2 -54 162 3 5 1293 198 103 0 0 chr11 92886499 92886528 -28957328 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1293 2342 300 63 72 chr11 92887862 92889176 -28954680 - Lx8 LINE L1 0 7473 6172 5 1293 1166 165 152 3 chr11 92889254 92889582 -28954274 - Lx9 LINE L1 0 7644 7268 5 1293 851 360 31 51 chr11 92889636 92889932 -28953924 - MLT1C LTR MaLR -2 465 185 5 1293 198 0 0 0 chr11 92889932 92889954 -28953902 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1293 1168 34 7 14 chr11 92889957 92890105 -28953751 - B1_Mm SINE Alu 0 147 1 5 1293 851 360 31 51 chr11 92890105 92890257 -28953599 - MLT1C LTR MaLR -283 184 22 5 1293 192 40 0 0 chr11 92891151 92891176 -28952680 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1293 3819 76 14 2 chr11 92891278 92891790 -28952066 - L1_Mus3 LINE L1 -6 6632 6115 5 1293 1624 39 0 24 chr11 92892922 92893134 -28950722 - L1Md_F3 LINE L1 -14 6570 6364 5 1293 1862 42 0 0 chr11 92893136 92893374 -28950482 + L1_Mm LINE L1 5024 5261 -622 5 1293 321 346 57 32 chr11 92893374 92893532 -28950324 + B3A SINE B2 34 195 -3 5 1293 23 33 0 0 chr11 92894253 92894283 -28949573 + AT_rich Low_complexity Low_complexity 1 30 0 5 1293 856 30 0 0 chr11 92894286 92894387 -28949469 - B2_Mm2 SINE B2 -94 101 1 5 1293 1261 67 5 58 chr11 92894464 92894670 -28949186 + B2_Mm2 SINE B2 1 195 0 5 1293 1118 62 20 14 chr11 92894739 92894750 -28949106 - B1_Mus1 SINE Alu 0 148 136 5 1293 468 49 24 35 chr11 92894750 92894835 -28949021 + (TTTG)n Simple_repeat Simple_repeat 1 84 0 5 1293 1118 62 20 14 chr11 92894835 92894969 -28948887 - B1_Mus1 SINE Alu -13 135 2 5 1293 555 53 0 0 chr11 92895082 92895157 -28948699 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 5 1293 605 269 71 52 chr11 92895208 92895420 -28948436 - B3A SINE B2 0 216 1 6 1293 262 169 78 11 chr11 92895612 92895702 -28948154 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 6 1293 1924 66 62 4 chr11 92895837 92896109 -28947747 - Lx3_Mus LINE L1 0 7009 6722 6 1293 930 92 0 0 chr11 92896109 92896240 -28947616 + Lx3_Mus LINE L1 6496 6626 -383 6 1293 356 0 23 0 chr11 92896240 92896284 -28947572 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 6 1293 504 277 0 0 chr11 92896312 92896424 -28947432 + B1F SINE Alu 2 113 -36 6 1293 22 56 0 0 chr11 92896831 92896867 -28946989 + AT_rich Low_complexity Low_complexity 1 36 0 6 1293 245 238 16 0 chr11 92897861 92897924 -28945932 + MLT1L LTR MaLR 205 268 -342 6 1293 419 311 70 70 chr11 92898288 92898516 -28945340 - MIRc SINE MIR -10 258 31 6 1293 271 264 12 100 chr11 92898619 92898699 -28945157 + ID_B1 SINE B4 85 157 -67 6 1293 405 0 0 0 chr11 92898704 92898749 -28945107 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1293 351 0 0 0 chr11 92898749 92898787 -28945069 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1293 23 33 0 0 chr11 92898798 92898828 -28945028 + AT_rich Low_complexity Low_complexity 1 30 0 6 1293 1815 259 88 20 chr11 92900165 92901181 -28942675 + L1MA6 LINE L1 4739 5836 -464 6 1293 1155 301 15 19 chr11 92901379 92901704 -28942152 - MTE2a LTR MaLR 0 379 56 6 1293 399 206 136 7 chr11 92901836 92901983 -28941873 + L1MA6 LINE L1 6006 6171 -129 6 1293 214 303 39 63 chr11 92902113 92902240 -28941616 - L2 LINE L2 -1434 1985 1862 6 1293 302 244 33 50 chr11 92902647 92902659 -28941197 + polypyrimidine Low_complexity Low_complexity 110 121 0 6 1293 237 33 0 0 chr11 92902659 92902689 -28941167 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1293 302 244 33 50 chr11 92902689 92902797 -28941059 + CT-rich Low_complexity Low_complexity 4 109 0 6 1293 446 0 0 18 chr11 92902810 92902865 -28940991 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1293 1086 66 7 0 chr11 92902865 92903001 -28940855 - B1_Mus2 SINE Alu -10 137 1 6 1293 206 413 54 0 chr11 92903768 92903860 -28939996 + MIRc SINE MIR 44 140 -128 6 1293 2543 174 41 86 chr11 92904044 92904635 -28939221 - RMER19C LTR ERVK -1 610 47 6 1293 1987 136 60 0 chr11 92904635 92904952 -28938904 + Lx2B LINE L1 6662 6997 -3 6 1293 890 305 21 11 chr11 92905047 92905332 -28938524 + B4 SINE B4 3 290 -2 6 1293 387 0 0 0 chr11 92905352 92905395 -28938461 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1293 960 144 0 0 chr11 92905893 92906039 -28937817 + B1_Mus1 SINE Alu 2 147 -1 6 1293 269 20 19 57 chr11 92906040 92906093 -28937763 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 6 1293 747 278 106 37 chr11 92906840 92907113 -28936743 + B4 SINE B4 1 292 0 6 1293 699 12 0 0 chr11 92907122 92907202 -28936654 + (GA)n Simple_repeat Simple_repeat 2 81 0 6 1293 316 263 80 7 chr11 92907204 92907342 -28936514 - L1MB1 LINE L1 -99 6090 5943 6 1293 269 312 0 49 chr11 92907739 92907820 -28936036 - RSINE1 SINE B4 -29 136 60 6 1293 418 264 24 42 chr11 92907910 92908114 -28935742 - L1MB1 LINE L1 -686 5482 5291 6 1293 405 0 0 0 chr11 92908121 92908166 -28935690 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1293 273 288 112 0 chr11 92908166 92908246 -28935610 - ID_B1 SINE B4 -9 215 127 6 1293 749 295 52 17 chr11 92908255 92908717 -28935139 - L1MB1 LINE L1 -1402 4738 4261 6 1293 1129 217 27 66 chr11 92908820 92908941 -28934915 - Lx9 LINE L1 -464 7180 7058 6 1293 2172 185 9 20 chr11 92908941 92909388 -28934468 - RMER10A LTR ERVL 0 442 1 6 1293 1129 217 27 66 chr11 92909388 92909601 -28934255 - Lx9 LINE L1 -587 7057 6859 6 1293 782 237 109 52 chr11 92909603 92909905 -28933951 + Lx9 LINE L1 7208 7518 -126 6 1293 270 0 0 0 chr11 92909905 92909935 -28933921 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1293 782 237 109 52 chr11 92909935 92910037 -28933819 + Lx9 LINE L1 7519 7635 -9 6 1293 2785 97 68 0 chr11 92910133 92910331 -28933525 - BGLII_A LTR ERVK 0 445 247 6 1293 566 28 0 14 chr11 92910331 92910404 -28933452 + (TCTCC)n Simple_repeat Simple_repeat 4 75 0 6 1293 2785 97 68 0 chr11 92910404 92910618 -28933238 - BGLII_A LTR ERVK -199 246 6 6 1293 21 0 0 0 chr11 92912501 92912522 -28931334 + AT_rich Low_complexity Low_complexity 1 21 0 6 1293 475 274 106 0 chr11 92912522 92912635 -28931221 + RSINE1 SINE B4 4 128 -37 6 1293 200 193 47 24 chr11 92912648 92912733 -28931123 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1293 32 0 0 0 chr11 92912819 92912851 -28931005 + AT_rich Low_complexity Low_complexity 1 32 0 6 1293 180 135 0 0 chr11 92913395 92913432 -28930424 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1293 4623 158 68 68 chr11 92913583 92914473 -28929383 + RMER19B LTR ERVK 1 890 -12 6 1293 204 40 0 0 chr11 92914533 92914558 -28929298 + (CATA)n Simple_repeat Simple_repeat 4 28 0 6 1293 1000 319 22 51 chr11 92914760 92915071 -28928785 + MTE2b LTR MaLR 25 326 -53 6 1293 195 284 56 47 chr11 92915121 92915228 -28928628 - MIRm SINE MIR -155 121 14 6 1293 29 0 0 0 chr11 92915569 92915598 -28928258 + AT_rich Low_complexity Low_complexity 1 29 0 6 1293 212 59 29 0 chr11 92915814 92915848 -28928008 + (CATA)n Simple_repeat Simple_repeat 4 38 0 6 1293 264 281 41 34 chr11 92917756 92917885 -28925971 + B3 SINE B2 69 197 -1 6 1293 753 240 174 39 chr11 92918159 92918441 -28925415 + RMER21B LTR ERV1 250 569 -273 6 1293 1172 266 12 43 chr11 92919441 92919787 -28924069 - Lx9 LINE L1 -845 6799 6465 6 1293 2690 174 61 62 chr11 92919823 92920327 -28923529 - RMER15 LTR ERVL 0 575 73 6 1293 4555 127 24 16 chr11 92920327 92921077 -28922779 - RMER6A LTR ERVK 0 756 1 6 1293 2690 174 61 62 chr11 92921077 92921148 -28922708 - RMER15 LTR ERVL -503 72 1 6 1293 393 264 7 110 chr11 92921354 92921490 -28922366 + B4A SINE B4 159 280 -12 6 1293 776 65 9 0 chr11 92921508 92921615 -28922241 + (CA)n Simple_repeat Simple_repeat 2 109 0 6 1293 2333 168 39 10 chr11 92922304 92922713 -28921143 + MTC LTR MaLR 1 421 0 6 1293 594 331 104 38 chr11 92923225 92923774 -28920082 - MLT1E2 LTR MaLR 0 505 13 6 1293 731 249 35 6 chr11 92924213 92924383 -28919473 - Lx5 LINE L1 -83 6967 6793 6 1293 233 200 0 0 chr11 92924385 92924425 -28919431 + HY3 scRNA scRNA 1 40 -61 6 1293 412 317 33 8 chr11 92924460 92924581 -28919275 + B3A SINE B2 3 126 -72 6 1293 333 0 0 0 chr11 92924583 92924620 -28919236 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1293 1473 252 80 13 chr11 92925390 92925776 -28918080 + MTD LTR MaLR 6 417 -2 6 1293 272 300 5 21 chr11 92925781 92925921 -28917935 - L1_Rod LINE L1 -643 5657 5503 6 1293 690 191 21 29 chr11 92927253 92927393 -28916463 - B1_Mur1 SINE Alu -1 148 10 6 1293 315 49 0 0 chr11 92927548 92927589 -28916267 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1293 305 278 6 0 chr11 92927667 92927840 -28916016 + (TG)n Simple_repeat Simple_repeat 1 174 0 6 1293 42 36 0 0 chr11 92927934 92927990 -28915866 + AT_rich Low_complexity Low_complexity 1 56 0 6 1293 1092 184 72 0 chr11 92928628 92928835 -28915021 + URR1A DNA MER1_type 3 224 -2 6 1293 449 317 54 18 chr11 92929498 92929665 -28914191 + B4A SINE B4 116 288 -4 6 1293 213 209 0 0 chr11 92929693 92929736 -28914120 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1294 217 51 0 49 chr11 92930090 92930131 -28913725 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 6 1294 193 372 58 10 chr11 92930184 92930287 -28913569 + MER5A DNA MER1_type 4 111 -78 6 1294 284 276 68 47 chr11 92931262 92931410 -28912446 - MIR3 SINE MIR -34 174 17 6 1294 332 232 106 9 chr11 92931856 92931969 -28911887 + L2a LINE L2 3208 3331 -95 6 1294 3342 96 15 46 chr11 92932006 92932530 -28911326 + Lx LINE L1 6146 6653 -1 6 1294 261 57 0 0 chr11 92932554 92932589 -28911267 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1294 610 24 36 0 chr11 92932589 92932672 -28911184 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 6 1294 219 286 0 0 chr11 92932698 92932754 -28911102 + L2a LINE L2 3367 3422 -4 6 1294 426 20 0 0 chr11 92932861 92932912 -28910944 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1294 34 0 0 0 chr11 92932980 92933014 -28910842 + AT_rich Low_complexity Low_complexity 1 34 0 6 1294 286 198 62 0 chr11 92933044 92933125 -28910731 - Lx4B LINE L1 -288 6770 6685 6 1294 2279 163 131 78 chr11 92933145 92933710 -28910146 + RMER19B LTR ERVK 308 902 0 6 1294 4618 179 20 26 chr11 92933716 92934710 -28909146 - Lx2B LINE L1 -318 6682 5695 6 1294 1109 123 3 5 chr11 92935528 92935721 -28908135 - B2_Mm2 SINE B2 -1 192 2 6 1294 203 250 12 0 chr11 92936464 92936548 -28907308 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 1294 1767 229 79 8 chr11 92936558 92937052 -28906804 - MT2A LTR ERVL 0 533 5 6 1294 465 219 7 52 chr11 92937148 92937302 -28906554 - MERVL_2A-int LTR ERVL -138 5623 5477 6 1294 585 0 0 0 chr11 92937305 92937370 -28906486 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 6 1294 1153 237 47 0 chr11 92937403 92937677 -28906179 - ORR1D2 LTR MaLR -83 287 1 6 1294 238 296 0 12 chr11 92937677 92937759 -28906097 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1294 725 280 24 43 chr11 92938028 92938406 -28905450 - Lx7 LINE L1 -1481 5992 5629 6 1294 206 282 68 34 chr11 92938417 92938505 -28905351 - MIRc SINE MIR -151 117 27 6 1294 738 261 71 19 chr11 92938761 92939027 -28904829 - Lx8 LINE L1 -2 7471 7192 6 1294 297 0 0 0 chr11 92939118 92939151 -28904705 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1294 25 0 0 0 chr11 92939229 92939254 -28904602 + AT_rich Low_complexity Low_complexity 1 25 0 6 1294 3335 62 11 20 chr11 92939258 92939705 -28904151 - L1_Mus2 LINE L1 -2 6564 6122 6 1294 1193 74 0 18 chr11 92939705 92939870 -28903986 + B2_Mm2 SINE B2 19 180 -15 6 1294 22 70 0 0 chr11 92941626 92941669 -28902187 + AT_rich Low_complexity Low_complexity 1 43 0 6 1294 876 245 5 15 chr11 92941748 92941943 -28901913 + B3A SINE B2 1 193 -5 6 1294 24 53 0 0 chr11 92943176 92943214 -28900642 + AT_rich Low_complexity Low_complexity 1 38 0 6 1294 21 0 0 0 chr11 92943433 92943454 -28900402 + AT_rich Low_complexity Low_complexity 1 21 0 7 1294 727 258 86 63 chr11 92943492 92943580 -28900276 - Lx8 LINE L1 -2 7471 7397 7 1294 1837 204 80 5 chr11 92943580 92943970 -28899886 - MTD LTR MaLR 0 419 1 7 1294 727 258 86 63 chr11 92943970 92944183 -28899673 - Lx8 LINE L1 -77 7396 7163 7 1294 500 308 0 0 chr11 92944226 92944372 -28899484 - Lx8 LINE L1 -457 7016 6871 7 1294 436 140 11 11 chr11 92944385 92944479 -28899377 + (TA)n Simple_repeat Simple_repeat 2 95 0 7 1294 410 307 0 0 chr11 92944485 92944612 -28899244 - Lx8 LINE L1 -633 6840 6714 7 1294 227 41 82 0 chr11 92944623 92944672 -28899184 + (TTG)n Simple_repeat Simple_repeat 2 54 0 7 1294 32025 96 23 3 chr11 92944736 92950987 -28892869 - L1Md_F2 LINE L1 -16 6566 194 7 1294 243 288 0 0 chr11 92951498 92951564 -28892292 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1294 384 22 0 0 chr11 92951585 92951630 -28892226 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1294 294 95 0 0 chr11 92951679 92951721 -28892135 + (TTA)n Simple_repeat Simple_repeat 1 42 0 7 1294 394 92 0 15 chr11 92951721 92951787 -28892069 - Lx2A LINE L1 -15 6993 6929 7 1294 1076 125 29 9 chr11 92951790 92952000 -28891856 - Lx2A LINE L1 -32 6976 6763 7 1294 396 0 0 0 chr11 92952384 92952428 -28891428 + (CATA)n Simple_repeat Simple_repeat 4 47 0 7 1294 448 357 89 51 chr11 92953270 92953586 -28890270 + MLT1D LTR MaLR 1 328 -177 7 1294 320 300 40 0 chr11 92953613 92953713 -28890143 + MLT1D LTR MaLR 402 505 0 7 1294 180 111 0 0 chr11 92954648 92954675 -28889181 + (TTA)n Simple_repeat Simple_repeat 1 27 0 7 1294 29 47 0 0 chr11 92954807 92954850 -28889006 + AT_rich Low_complexity Low_complexity 1 43 0 7 1294 475 298 49 20 chr11 92955594 92955841 -28888015 - L1M4 LINE L1 -1242 4904 4651 7 1294 363 305 41 97 chr11 92955844 92955989 -28887867 - PB1D10 SINE Alu -7 140 4 7 1294 310 336 23 54 chr11 92955883 92956012 -28887844 - ID_B1 SINE B4 -33 191 67 7 1294 21 36 0 0 chr11 92956153 92956181 -28887675 + AT_rich Low_complexity Low_complexity 1 28 0 7 1294 361 111 0 36 chr11 92956521 92956605 -28887251 + (CAAAA)n Simple_repeat Simple_repeat 1 81 0 7 1294 186 43 0 0 chr11 92956745 92956768 -28887088 + (CCA)n Simple_repeat Simple_repeat 1 23 0 7 1294 710 238 66 0 chr11 92956985 92957136 -28886720 + B3A SINE B2 1 161 -37 7 1294 627 298 146 60 chr11 92957698 92958033 -28885823 + MLT1A0 LTR MaLR 1 364 -1 7 1294 218 269 38 25 chr11 92958033 92958113 -28885743 + MIRb SINE MIR 173 253 -15 7 1294 238 302 0 0 chr11 92960069 92960132 -28883724 + G-rich Low_complexity Low_complexity 1 63 0 7 1294 226 273 0 0 chr11 92960502 92960557 -28883299 + C-rich Low_complexity Low_complexity 3 57 0 7 1294 186 71 0 0 chr11 92961664 92961692 -28882164 + (TTTTTA)n Simple_repeat Simple_repeat 6 33 0 7 1294 504 59 0 0 chr11 92961829 92961897 -28881959 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1294 456 86 0 0 chr11 92964396 92964466 -28879390 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1294 267 217 16 16 chr11 92964773 92964834 -28879022 + GA-rich Low_complexity Low_complexity 4 64 0 7 1294 24 32 0 0 chr11 92965239 92965270 -28878586 + AT_rich Low_complexity Low_complexity 1 31 0 7 1294 235 295 47 73 chr11 92965506 92965656 -28878200 + MIR SINE MIR 117 262 0 7 1294 870 254 98 8 chr11 92965759 92966025 -28877831 + B4A SINE B4 1 290 -2 7 1294 374 234 0 9 chr11 92966050 92966158 -28877698 + (CA)n Simple_repeat Simple_repeat 2 108 0 7 1294 338 26 0 0 chr11 92966167 92966206 -28877650 + HAL1-3A_ME LINE L1 1975 2013 -845 7 1294 22 0 0 0 chr11 92966463 92966485 -28877371 + AT_rich Low_complexity Low_complexity 1 22 0 7 1294 658 165 7 15 chr11 92966623 92966758 -28877098 - URR1B DNA MER1_type 0 225 92 7 1294 243 257 102 75 chr11 92967164 92967311 -28876545 + MIRc SINE MIR 96 246 -22 7 1294 306 0 0 0 chr11 92968426 92968460 -28875396 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1294 189 0 0 0 chr11 92969055 92969076 -28874780 + (CAA)n Simple_repeat Simple_repeat 2 22 0 7 1294 222 90 88 25 chr11 92969545 92969625 -28874231 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 7 1294 201 264 0 19 chr11 92971395 92971449 -28872407 + L2a LINE L2 3355 3407 -19 7 1294 230 192 77 0 chr11 92971449 92971527 -28872329 + (TTAA)n Simple_repeat Simple_repeat 4 87 0 7 1294 1109 309 41 19 chr11 92972084 92972447 -28871409 - MTEa LTR MaLR -8 371 1 7 1294 261 0 0 0 chr11 92972828 92972857 -28870999 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1294 2042 148 61 3 chr11 92973575 92973921 -28869935 - ORR1B2 LTR MaLR -1 366 1 7 1294 24 53 0 0 chr11 92973927 92973965 -28869891 + AT_rich Low_complexity Low_complexity 1 38 0 7 1294 459 0 0 0 chr11 92974701 92974752 -28869104 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1294 463 301 56 88 chr11 92974786 92975070 -28868786 - B4 SINE B4 -17 275 1 7 1294 250 215 5 18 chr11 92975540 92975619 -28868237 + MIRb SINE MIR 178 256 -6 7 1294 251 307 0 0 chr11 92975901 92975976 -28867880 + (CAT)n Simple_repeat Simple_repeat 3 77 0 7 1294 253 137 0 38 chr11 92976929 92977015 -28866841 - L1Md_F2 LINE L1 0 6582 6520 7 1294 1026 102 6 0 chr11 92977013 92977170 -28866686 + L1_Mus1 LINE L1 6346 6503 -64 7 1294 450 283 61 9 chr11 92977174 92977288 -28866568 + B3A SINE B2 45 164 -34 7 1294 410 352 35 14 chr11 92977442 92977583 -28866273 - ORR1E LTR MaLR -215 144 1 7 1294 231 114 0 0 chr11 92977995 92978030 -28865826 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1294 181 54 0 98 chr11 92978288 92978329 -28865527 + G-rich Low_complexity Low_complexity 2 38 0 7 1294 580 287 123 16 chr11 92978444 92978752 -28865104 + MER58B DNA MER1_type 1 341 0 7 1294 295 333 51 18 chr11 92978779 92978996 -28864860 - L1ME1 LINE L1 -7 6172 5949 7 1294 242 248 49 107 chr11 92979319 92979441 -28864415 + ORR1B1-int LTR MaLR 530 644 -865 7 1294 719 231 85 40 chr11 92979457 92979633 -28864223 + B4 SINE B4 14 197 -95 7 1294 3802 162 26 16 chr11 92979634 92980395 -28863461 - L1_Mur2 LINE L1 -1017 4860 4092 7 1294 1529 257 88 55 chr11 92980392 92980569 -28863287 + Lx5 LINE L1 6473 6664 -386 7 1294 2991 69 15 3 chr11 92980569 92980960 -28862896 + MTB LTR MaLR 5 400 0 7 1294 1529 257 88 55 chr11 92980960 92981325 -28862531 + Lx5 LINE L1 6665 7033 -17 7 1294 225 0 0 0 chr11 92981410 92981435 -28862421 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1294 191 227 0 22 chr11 92981659 92981704 -28862152 - MIRb SINE MIR -108 160 117 7 1294 311 293 36 40 chr11 92983345 92983461 -28860395 - B1F SINE Alu -16 104 1 7 1294 271 326 0 50 chr11 92983883 92983983 -28859873 - MIRb SINE MIR -142 126 30 7 1294 251 288 0 0 chr11 92984478 92984537 -28859319 - L2a LINE L2 -5 3421 3363 7 1294 1710 273 81 35 chr11 92986146 92987174 -28856682 - L1MA8 LINE L1 -42 6249 5161 7 1294 348 365 18 63 chr11 92987373 92987595 -28856261 + MIRb SINE MIR 21 232 -36 7 1294 229 316 108 57 chr11 92988759 92988917 -28854939 + MIR SINE MIR 52 217 -45 7 1294 1360 237 17 24 chr11 92990795 92991093 -28852763 + MTD LTR MaLR 1 296 -123 7 1294 313 224 45 0 chr11 92991107 92991174 -28852682 + MTD LTR MaLR 351 420 -1 7 1294 1215 331 46 20 chr11 92991936 92992331 -28851525 - Tigger7 DNA MER2_type -2084 407 3 7 1294 207 269 14 82 chr11 92992568 92992641 -28851215 + MIRm SINE MIR 114 181 -95 7 1294 1907 224 5 180 chr11 92992736 92993476 -28850380 - RMER19C LTR ERVK 0 611 1 7 1294 609 312 49 29 chr11 92994151 92994395 -28849461 - Lx8 LINE L1 -416 7057 6809 7 1294 2157 258 68 7 chr11 92994427 92995031 -28848825 - Lx6 LINE L1 -246 7214 6574 7 1294 3612 212 28 47 chr11 92995025 92995906 -28847950 + Lx6 LINE L1 5591 6455 -1005 7 1294 1242 238 85 7 chr11 92995906 92996211 -28847645 + MTD LTR MaLR 91 419 0 7 1294 213 322 0 0 chr11 92997325 92997384 -28846472 - MIR SINE MIR -18 244 186 7 1294 342 237 22 0 chr11 92997414 92997553 -28846303 + (CATATA)n Simple_repeat Simple_repeat 5 146 0 7 1294 187 385 62 0 chr11 92997632 92997697 -28846159 - MIR SINE MIR -186 76 8 7 1294 195 42 0 0 chr11 92998856 92998880 -28844976 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1294 274 205 26 26 chr11 92999705 92999820 -28844036 + CT-rich Low_complexity Low_complexity 3 117 0 7 1294 532 169 42 8 chr11 92999856 92999975 -28843881 - Lx9 LINE L1 -188 7456 7334 7 1294 272 308 13 0 chr11 93000671 93000749 -28843107 - Tigger5 DNA MER2_type -37 2369 2291 1 1294 641 299 60 0 chr11 93000747 93000948 -28842908 - Tigger5 DNA MER2_type -2166 240 28 1 1294 1319 245 125 31 chr11 93002131 93002514 -28841342 + MTD LTR MaLR 1 419 0 2 1294 237 333 26 20 chr11 93002514 93002659 -28841197 + LTR16A1 LTR ERVL 303 448 -8 3 1294 263 306 257 5 chr11 93002687 93002874 -28840982 - MIRb SINE MIR -28 240 7 4 1294 1618 114 112 18 chr11 93003531 93003807 -28840049 - Lx4A LINE L1 -5 7053 6752 5 1294 201 343 46 37 chr11 93004297 93004406 -28839450 + MIRc SINE MIR 122 231 -37 6 1294 4179 75 11 7 chr11 93005247 93005809 -28838047 - L1Md_F2 LINE L1 -8 6574 6011 7 1294 441 0 0 0 chr11 93006951 93007000 -28836856 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 1294 576 24 37 0 chr11 93007001 93007083 -28836773 + (GA)n Simple_repeat Simple_repeat 1 85 0 9 1294 792 256 18 18 chr11 93007118 93007281 -28836575 - B3A SINE B2 -35 163 1 1 1294 354 197 0 0 chr11 93007504 93007575 -28836281 - Lx9 LINE L1 -860 6784 6714 1 1294 229 167 19 0 chr11 93007576 93007630 -28836226 + Lx9 LINE L1 7583 7637 -7 1 1294 3093 135 57 17 chr11 93007829 93008371 -28835485 - RLTR12A LTR ERVK -4 564 1 1 1294 920 256 22 13 chr11 93008475 93008842 -28835014 - L1MA4A LINE L1 -287 6013 5618 1 1294 557 140 22 7 chr11 93009054 93009191 -28834665 + GA-rich Low_complexity Low_complexity 1 139 0 1 1294 279 279 0 14 chr11 93010696 93010765 -28833091 + ID4_ SINE ID 5 72 -11 1 1294 441 0 0 0 chr11 93010798 93010847 -28833009 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1294 315 0 0 0 chr11 93010848 93010883 -28832973 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1294 741 238 33 52 chr11 93011277 93011490 -28832366 - ID_B1 SINE B4 -14 210 2 1 1294 580 284 119 75 chr11 93011550 93011828 -28832028 - MER57F LTR ERV1 -56 380 91 2 1294 863 222 41 15 chr11 93011851 93012048 -28831808 - Lx8 LINE L1 -136 7337 7136 2 1294 775 210 5 65 chr11 93012290 93012489 -28831367 + Lx8 LINE L1 6938 7124 -349 2 1294 1094 194 25 87 chr11 93012505 93012881 -28830975 + URR1B DNA MER1_type 1 219 -6 2 1294 539 380 87 21 chr11 93012896 93013323 -28830533 + LTR82B Low_complexity ERVL 38 492 -338 2 1294 504 0 0 0 chr11 93013371 93013427 -28830429 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1294 232 367 25 0 chr11 93013691 93013770 -28830086 + RSINE1 SINE B4 83 163 -2 2 1294 441 0 0 0 chr11 93013777 93013826 -28830030 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1294 1448 189 117 23 chr11 93013844 93014186 -28829670 - ORR1D1 LTR MaLR 0 374 1 2 1294 209 345 8 25 chr11 93014597 93014719 -28829137 + L2 LINE L2 1679 1798 -1621 2 1294 456 326 146 44 chr11 93015276 93015709 -28828147 + L1ME3B LINE L1 5352 5828 -412 3 1294 290 323 11 0 chr11 93016051 93016144 -28827712 + BC1_Mm scRNA scRNA 3 96 -56 3 1294 633 80 0 0 chr11 93016643 93016731 -28827125 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 1294 216 189 0 0 chr11 93016740 93016777 -28827079 - B1F SINE Alu -83 66 30 3 1294 2534 164 29 5 chr11 93016777 93017188 -28826668 + MTC LTR MaLR 1 421 0 3 1294 674 259 67 22 chr11 93017833 93018011 -28825845 + ID_B1 SINE B4 39 224 0 3 1294 1028 289 114 45 chr11 93018298 93018787 -28825069 - MT2A LTR ERVL 0 533 11 3 1294 384 254 51 51 chr11 93019389 93019526 -28824330 - B1F SINE Alu -1 148 12 3 1294 759 305 9 14 chr11 93019906 93020122 -28823734 - ID_B1 SINE B4 -7 217 3 3 1294 1822 156 89 12 chr11 93020294 93020631 -28823225 + ORR1B2 LTR MaLR 5 367 0 3 1294 28 29 0 0 chr11 93020814 93020849 -28823007 + AT_rich Low_complexity Low_complexity 1 35 0 4 1294 467 290 28 2 chr11 93021213 93021424 -28822432 - L1MB1 LINE L1 -253 5936 5653 4 1294 22 0 0 0 chr11 93022571 93022593 -28821263 + AT_rich Low_complexity Low_complexity 1 22 0 4 1294 231 140 0 0 chr11 93022660 93022710 -28821146 + (A)n Simple_repeat Simple_repeat 1 50 0 4 1294 269 362 21 0 chr11 93022748 93022842 -28821014 - B2_Mm1t SINE B2 -97 96 1 4 1294 388 245 131 91 chr11 93022875 93023050 -28820806 + MIR SINE MIR 10 191 -71 4 1294 210 37 0 0 chr11 93023694 93023721 -28820135 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 4 1294 3697 69 39 0 chr11 93023973 93024467 -28819389 - L1Md_F2 LINE L1 -2 6580 6068 4 1294 24 53 0 0 chr11 93025092 93025130 -28818726 + AT_rich Low_complexity Low_complexity 1 38 0 4 1294 225 0 0 0 chr11 93025593 93025618 -28818238 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1294 257 368 51 0 chr11 93026298 93026415 -28817441 - MLT1J LTR MaLR -327 185 63 5 1294 189 0 0 0 chr11 93026846 93026867 -28816989 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 5 1294 32709 82 8 6 chr11 93027566 93033730 -28810126 - L1Md_F2 LINE L1 0 6582 403 5 1294 23 0 0 0 chr11 93033895 93033918 -28809938 + AT_rich Low_complexity Low_complexity 1 23 0 5 1294 314 284 53 44 chr11 93033970 93034195 -28809661 + L1MC3 LINE L1 7544 7770 -15 5 1294 333 0 0 0 chr11 93034206 93034243 -28809613 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1294 279 298 43 68 chr11 93034339 93034501 -28809355 + L2 LINE L2 2160 2317 -1102 5 1294 249 108 0 0 chr11 93034701 93034738 -28809118 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1294 186 372 136 23 chr11 93035589 93035721 -28808135 - L2b LINE L2 -8 3367 3221 5 1294 375 23 0 0 chr11 93037176 93037220 -28806636 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1294 5551 86 16 12 chr11 93037254 93038020 -28805836 + Lx3_Mus LINE L1 6223 6991 -18 6 1294 186 71 0 0 chr11 93038181 93038209 -28805647 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1294 402 74 0 0 chr11 93038281 93038335 -28805521 + (TTA)n Simple_repeat Simple_repeat 2 55 0 6 1294 213 167 0 0 chr11 93038701 93038755 -28805101 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1294 29 104 0 0 chr11 93038756 93038862 -28804994 + AT_rich Low_complexity Low_complexity 1 106 0 6 1294 234 81 0 0 chr11 93038862 93038899 -28804957 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1294 525 335 25 62 chr11 93038999 93039161 -28804695 + RSINE1 SINE B4 4 159 -6 6 1294 491 324 19 76 chr11 93039127 93039167 -28804689 - RSINE1 SINE B4 -14 151 113 6 1294 474 75 0 0 chr11 93039167 93039234 -28804622 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1294 491 324 19 76 chr11 93039234 93039350 -28804506 - RSINE1 SINE B4 -53 112 5 6 1294 728 319 36 12 chr11 93039423 93039759 -28804097 - L1_Rod LINE L1 -3420 2427 2084 6 1294 565 294 18 41 chr11 93039947 93040117 -28803739 - B4A SINE B4 -126 166 1 7 1294 306 73 0 0 chr11 93040752 93040793 -28803063 + (TCC)n Simple_repeat Simple_repeat 3 43 0 7 1294 1185 140 63 0 chr11 93040796 93041003 -28802853 - Lx2 LINE L1 0 6997 6778 7 1294 667 318 43 11 chr11 93041630 93041910 -28801946 - MER58B DNA MER1_type -14 327 39 7 1294 1526 271 60 8 chr11 93042143 93042612 -28801244 + Lx7 LINE L1 6828 7320 -376 7 1294 613 279 9 73 chr11 93042673 93042893 -28800963 - Lx7 LINE L1 -642 7054 6849 7 1294 21 0 0 0 chr11 93043074 93043095 -28800761 + AT_rich Low_complexity Low_complexity 1 21 0 7 1294 696 0 0 0 chr11 93043095 93043181 -28800675 - L1Md_A LINE L1 0 6582 6497 7 1294 5182 2 0 0 chr11 93043181 93043776 -28800080 + L1Md_A LINE L1 5876 6470 -112 7 1294 201 39 0 0 chr11 93043791 93043817 -28800039 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 7 1294 478 304 67 47 chr11 93043838 93044031 -28799825 + B3A SINE B2 1 197 -1 7 1294 273 29 0 0 chr11 93044168 93044202 -28799654 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 8 1294 1738 68 38 4 chr11 93045021 93045257 -28798599 - L1_Mus2 LINE L1 0 6566 6323 8 1294 26 50 0 0 chr11 93045584 93045624 -28798232 + AT_rich Low_complexity Low_complexity 1 40 0 8 1294 276 100 0 0 chr11 93045714 93045754 -28798102 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1294 564 292 0 28 chr11 93045830 93045971 -28797885 - 7SK RNA RNA -91 240 104 8 1294 216 210 0 16 chr11 93045980 93046043 -28797813 + T-rich Low_complexity Low_complexity 2 63 0 8 1294 275 305 0 0 chr11 93048167 93048262 -28795594 + CT-rich Low_complexity Low_complexity 4 98 0 8 1294 296 227 89 18 chr11 93048819 93048931 -28794925 + MLT2D LTR ERVL 1 120 -294 8 1294 204 213 21 0 chr11 93048957 93049004 -28794852 + C-rich Low_complexity Low_complexity 5 52 0 8 1294 404 19 19 0 chr11 93049039 93049092 -28794764 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1294 216 158 0 0 chr11 93049194 93049232 -28794624 + CT-rich Low_complexity Low_complexity 1 38 0 9 1294 252 0 0 0 chr11 93049232 93049260 -28794596 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1294 279 54 0 0 chr11 93049260 93049297 -28794559 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1294 366 404 45 19 chr11 93049298 93049452 -28794404 - RSINE1 SINE B4 -6 159 2 9 1294 4384 130 32 23 chr11 93049902 93050651 -28793205 - RMER6A LTR ERVK 0 756 1 9 1294 291 28 0 0 chr11 93050755 93050791 -28793065 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1294 278 321 0 12 chr11 93050837 93050922 -28792934 + Lx8 LINE L1 7190 7273 -200 9 1294 23 0 0 0 chr11 93051200 93051223 -28792633 + AT_rich Low_complexity Low_complexity 1 23 0 9 1294 416 50 17 0 chr11 93052204 93052264 -28791592 - L1Md_F3 LINE L1 -649 5935 5875 9 1294 346 123 39 52 chr11 93052264 93052341 -28791515 + B2_Mm2 SINE B2 120 195 0 9 1294 3346 172 72 52 chr11 93052472 93052818 -28791038 - RMER6D LTR ERVK -8 712 369 1 1294 210 71 0 0 chr11 93052818 93052846 -28791010 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1294 3346 172 72 52 chr11 93052846 93053197 -28790659 - RMER6D LTR ERVK -352 368 1 1 1294 221 196 0 18 chr11 93053283 93053340 -28790516 + (TAA)n Simple_repeat Simple_repeat 3 58 0 1 1294 388 248 111 8 chr11 93054408 93054534 -28789322 - MLT1E LTR MaLR -6 647 509 1 1294 305 368 54 50 chr11 93054636 93054876 -28788980 - MLT1E LTR MaLR -364 316 76 1 1294 935 306 70 12 chr11 93055020 93055437 -28788419 + Lx8 LINE L1 7027 7467 -6 1 1294 188 346 113 19 chr11 93055515 93055621 -28788235 + L3 LINE CR1 911 1026 -3463 1 1294 425 328 19 99 chr11 93055671 93055743 -28788113 - MLT1D LTR MaLR -264 241 180 1 1294 352 277 44 9 chr11 93055743 93055856 -28788000 + PB1D9 SINE Alu 2 118 -2 1 1294 425 328 19 99 chr11 93055856 93055996 -28787860 - MLT1D LTR MaLR -326 179 46 1 1294 541 303 78 38 chr11 93056462 93056937 -28786919 - L1MD3 LINE L1 -1 7994 7293 1 1294 212 320 87 0 chr11 93056979 93057094 -28786762 - MIRm SINE MIR -133 143 10 1 1294 261 333 0 51 chr11 93057458 93057575 -28786281 + MIR3 SINE MIR 96 206 -2 1 1294 205 352 117 36 chr11 93057865 93058139 -28785717 - L2c LINE L2 -47 3340 3045 1 1294 286 356 75 7 chr11 93058235 93058382 -28785474 + MIRc SINE MIR 6 162 -106 1 1294 317 312 0 21 chr11 93058639 93058734 -28785122 + GA-rich Low_complexity Low_complexity 6 98 0 1 1294 1339 273 47 6 chr11 93059222 93059565 -28784291 + MTE2b LTR MaLR 1 357 -22 1 1294 1374 290 130 42 chr11 93059719 93060528 -28783328 + MER97a DNA MER1_type? 9 888 -6 1 1295 377 225 219 23 chr11 93061588 93061757 -28782099 - Lx9 LINE L1 -1723 5921 5690 1 1295 820 308 46 39 chr11 93061760 93062176 -28781680 + L1M2 LINE L1 4560 4978 -1165 1 1295 793 289 73 29 chr11 93062187 93062529 -28781327 + Lx8 LINE L1 7113 7469 -4 1 1295 748 354 70 18 chr11 93062557 93063270 -28780586 + L1_Mur3 LINE L1 4944 5693 -187 1 1295 24 53 0 0 chr11 93064113 93064151 -28779705 + AT_rich Low_complexity Low_complexity 1 38 0 1 1295 180 0 0 0 chr11 93064282 93064302 -28779554 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1295 270 0 0 0 chr11 93064520 93064550 -28779306 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1295 845 291 32 20 chr11 93064826 93065072 -28778784 + B4A SINE B4 30 278 -14 1 1295 396 0 0 0 chr11 93065660 93065704 -28778152 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1295 296 340 72 38 chr11 93066691 93066954 -28776902 + B4A SINE B4 3 274 -18 1 1295 258 192 0 0 chr11 93067107 93067159 -28776697 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1295 373 319 106 63 chr11 93067704 93068052 -28775804 - L1ME1 LINE L1 -188 5991 5629 1 1295 293 295 38 16 chr11 93068055 93068241 -28775615 - L1ME1 LINE L1 -2234 3912 3723 1 1295 900 252 115 30 chr11 93068420 93068751 -28775105 - ORR1E LTR MaLR 0 359 1 1 1295 195 42 0 0 chr11 93068941 93068965 -28774891 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1295 438 69 0 0 chr11 93069059 93069117 -28774739 + (TCCC)n Simple_repeat Simple_repeat 3 60 0 1 1295 204 294 0 0 chr11 93069209 93069260 -28774596 + CT-rich Low_complexity Low_complexity 5 55 0 1 1295 662 314 53 43 chr11 93069501 93070010 -28773846 - L1MEf LINE L1 -3172 3147 2634 1 1295 218 208 292 0 chr11 93070165 93070237 -28773619 + B1F SINE Alu 1 93 -56 1 1295 551 74 0 12 chr11 93070242 93070324 -28773532 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1295 233 262 0 0 chr11 93070336 93070397 -28773459 - L1MEf LINE L1 -4512 1903 1843 1 1295 1967 71 0 4 chr11 93070438 93070692 -28773164 + Lx3A LINE L1 6640 6892 -89 1 1295 947 97 14 0 chr11 93070692 93070836 -28773020 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 1 1295 666 73 18 9 chr11 93070906 93071017 -28772839 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1295 422 191 83 0 chr11 93071086 93071170 -28772686 - RLTR11A2 LTR ERVK 0 527 437 1 1295 1135 107 34 11 chr11 93071170 93071349 -28772507 + B2_Mm2 SINE B2 2 184 -11 1 1295 1755 239 24 17 chr11 93071355 93071777 -28772079 - RLTR11A2 LTR ERVK -85 442 18 1 1295 554 255 10 50 chr11 93072064 93072262 -28771594 - L1MA4A LINE L1 -380 5923 5734 1 1295 326 271 61 83 chr11 93072467 93072696 -28771160 - L1MEf LINE L1 -5060 1355 1112 1 1295 282 263 52 13 chr11 93072697 93072774 -28771082 - PB1D10 SINE Alu 0 117 38 1 1295 453 50 0 0 chr11 93072915 93072975 -28770881 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1 1295 492 281 64 26 chr11 93073065 93073106 -28770750 + L1MA9 LINE L1 5847 5887 -425 1 1295 239 0 32 0 chr11 93073106 93073137 -28770719 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1 1295 492 281 64 26 chr11 93073137 93073329 -28770527 + L1MA9 LINE L1 5888 6088 -224 1 1295 244 287 48 16 chr11 93073381 93073505 -28770351 + L1MA9 LINE L1 6179 6306 -6 1 1295 309 362 45 27 chr11 93074008 93074232 -28769624 - L1MEf LINE L1 -6122 278 51 1 1295 380 341 145 15 chr11 93074735 93074997 -28768859 - L3 LINE CR1 -316 4173 3878 1 1295 23 78 0 0 chr11 93075593 93075644 -28768212 + AT_rich Low_complexity Low_complexity 1 51 0 1 1295 501 17 0 0 chr11 93075727 93075785 -28768071 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1295 183 80 0 0 chr11 93075798 93075823 -28768033 + (CTTA)n Simple_repeat Simple_repeat 2 26 0 1 1295 184 301 84 50 chr11 93076585 93076704 -28767152 + MIR SINE MIR 23 145 -63 1 1295 231 114 0 0 chr11 93076708 93076743 -28767113 + (GGA)n Simple_repeat Simple_repeat 3 37 0 1 1295 1242 100 0 0 chr11 93076743 93076923 -28766933 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1295 551 117 11 0 chr11 93078352 93078446 -28765410 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1295 227 284 15 0 chr11 93078447 93078537 -28765319 + GA-rich Low_complexity Low_complexity 1 91 0 1 1295 617 156 25 0 chr11 93078537 93078659 -28765197 + G-rich Low_complexity Low_complexity 3 127 0 1 1295 273 322 221 34 chr11 93078956 93079284 -28764572 + L2c LINE L2 3009 3422 -4 1 1295 278 258 169 15 chr11 93079434 93079564 -28764292 + MER5A DNA MER1_type 40 189 0 1 1295 541 270 90 17 chr11 93079911 93080088 -28763768 + B3A SINE B2 2 191 -7 1 1295 243 349 22 15 chr11 93080264 93080398 -28763458 - L1MA9 LINE L1 -234 6078 5944 1 1295 500 239 31 31 chr11 93080507 93080708 -28763148 - L1MA9 LINE L1 -328 5972 5772 1 1295 1074 136 0 0 chr11 93081312 93081518 -28762338 + (TTTC)n Simple_repeat Simple_repeat 1 206 0 1 1295 324 250 56 0 chr11 93083932 93084004 -28759852 - ID4 SINE ID -2 81 6 1 1295 489 17 0 0 chr11 93085269 93085327 -28758529 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1295 504 0 0 0 chr11 93085327 93085382 -28758474 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1295 703 245 65 40 chr11 93085493 93085693 -28758163 + B3 SINE B2 2 206 -10 1 1295 195 204 0 0 chr11 93085941 93085990 -28757866 + (CACCAT)n Simple_repeat Simple_repeat 4 52 0 1 1295 285 336 86 36 chr11 93085990 93086129 -28757727 - MIRb SINE MIR -6 262 117 1 1295 954 249 187 15 chr11 93087075 93087417 -28756439 - Lx8 LINE L1 -1 7472 7072 1 1295 213 0 53 26 chr11 93087680 93087718 -28756138 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1295 1068 95 0 0 chr11 93087718 93087855 -28756001 - B1_Mus1 SINE Alu -9 139 3 1 1295 340 307 107 12 chr11 93088036 93088204 -28755652 + L1M4 LINE L1 2340 2523 -3623 1 1295 239 315 14 86 chr11 93088402 93088541 -28755315 + L1ME3A LINE L1 6021 6149 -24 1 1295 356 0 23 0 chr11 93088729 93088773 -28755083 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 1 1295 270 302 28 19 chr11 93088823 93088931 -28754925 - Charlie26a DNA MER1_type -109 216 108 1 1295 1148 76 0 0 chr11 93089367 93089511 -28754345 + B1_Mus1 SINE Alu 3 146 -2 1 1295 207 0 0 0 chr11 93089519 93089542 -28754314 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1295 728 302 62 78 chr11 93089979 93090837 -28753019 - L1M3 LINE L1 -2334 3806 2963 1 1295 375 169 0 0 chr11 93091062 93091133 -28752723 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1295 226 305 31 31 chr11 93092485 93092583 -28751273 - MIRb SINE MIR -64 204 107 1 1295 225 0 0 0 chr11 93092753 93092778 -28751078 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 1 1295 1843 212 20 23 chr11 93092779 93093131 -28750725 - Lx5 LINE L1 -17 7033 6683 1 1295 639 244 63 0 chr11 93093132 93093259 -28750597 + Lx5 LINE L1 6548 6682 -368 1 1295 213 39 0 0 chr11 93093292 93093318 -28750538 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1295 890 153 14 0 chr11 93094335 93094479 -28749377 - B1_Mus2 SINE Alu 0 147 2 1 1295 1814 154 269 52 chr11 93094753 93095233 -28748623 - RLTR31A_Mm LTR ERVK 0 584 1 1 1295 23 54 0 0 chr11 93095371 93095408 -28748448 + AT_rich Low_complexity Low_complexity 1 37 0 1 1295 679 176 8 0 chr11 93095520 93095643 -28748213 + B1_Mus2 SINE Alu 14 144 -5 1 1295 21 0 0 0 chr11 93095655 93095676 -28748180 + AT_rich Low_complexity Low_complexity 1 21 0 1 1295 23 0 0 0 chr11 93096341 93096364 -28747492 + AT_rich Low_complexity Low_complexity 1 23 0 1 1295 525 32 0 0 chr11 93096779 93096842 -28747014 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1295 3113 29 50 0 chr11 93097176 93097553 -28746303 + MTA_Mm LTR MaLR 1 396 0 1 1295 295 335 102 5 chr11 93098879 93099065 -28744791 + Tigger12 DNA MER2_type 1683 1886 -73 1 1295 791 233 80 5 chr11 93099298 93099522 -28744334 + Lx9 LINE L1 7274 7514 -130 1 1295 394 227 39 48 chr11 93099530 93099738 -28744118 + Lx9 LINE L1 7419 7624 -20 1 1295 28 48 0 0 chr11 93099778 93099820 -28744036 + AT_rich Low_complexity Low_complexity 1 42 0 1 1295 786 236 89 44 chr11 93101546 93101573 -28742283 + Lx7 LINE L1 7175 7201 -495 1 1295 411 21 0 0 chr11 93101573 93101621 -28742235 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1295 786 236 89 44 chr11 93101621 93101836 -28742020 + Lx7 LINE L1 7202 7429 -267 1 1295 375 23 0 0 chr11 93101836 93101880 -28741976 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1295 786 236 89 44 chr11 93101880 93101951 -28741905 + Lx7 LINE L1 7430 7502 -194 1 1295 441 0 0 0 chr11 93101951 93102000 -28741856 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 1 1295 509 227 7 28 chr11 93102000 93102145 -28741711 + Lx7 LINE L1 7555 7696 0 1 1295 21 36 0 0 chr11 93102147 93102175 -28741681 + AT_rich Low_complexity Low_complexity 1 28 0 1 1295 513 32 0 0 chr11 93102210 93102273 -28741583 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1295 306 73 0 0 chr11 93103504 93103545 -28740311 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 1295 273 57 0 0 chr11 93104571 93104606 -28739250 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2 1295 228 283 94 42 chr11 93105002 93105098 -28738758 + ORR1E LTR MaLR 256 356 -3 2 1295 189 0 0 0 chr11 93105627 93105648 -28738208 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1295 1225 228 63 32 chr11 93105795 93106080 -28737776 - Lx9 LINE L1 -246 7398 7105 2 1295 479 36 36 12 chr11 93106103 93106186 -28737670 + (TA)n Simple_repeat Simple_repeat 2 86 0 2 1295 821 168 4 36 chr11 93106239 93106489 -28737367 + (TATATG)n Simple_repeat Simple_repeat 1 242 0 2 1295 321 176 11 105 chr11 93106508 93106603 -28737253 - Lx9 LINE L1 -570 7074 6989 2 1295 608 206 0 0 chr11 93106649 93106785 -28737071 + Lx9 LINE L1 7505 7640 -4 2 1295 424 237 122 58 chr11 93106916 93107104 -28736752 - B3 SINE B2 -12 204 5 2 1295 333 0 0 0 chr11 93107829 93107866 -28735990 + (TTA)n Simple_repeat Simple_repeat 1 37 0 2 1295 1191 204 37 0 chr11 93109417 93109633 -28734223 - URR1B DNA MER1_type 0 225 2 2 1295 316 218 80 98 chr11 93110363 93110475 -28733381 + RSINE1 SINE B4 13 122 -43 2 1295 432 0 0 0 chr11 93110476 93110524 -28733332 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1295 342 0 0 0 chr11 93110548 93110586 -28733270 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2 1295 490 322 7 7 chr11 93110610 93110754 -28733102 + B1F SINE Alu 1 144 -5 2 1295 394 140 32 95 chr11 93111976 93112102 -28731754 + Lx2A1 LINE L1 6890 7007 -1 2 1295 681 338 21 21 chr11 93112238 93112480 -28731376 + B4A SINE B4 25 266 -26 2 1295 459 0 0 0 chr11 93112483 93112534 -28731322 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1295 402 121 0 0 chr11 93112534 93112600 -28731256 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1295 236 202 70 81 chr11 93113702 93113788 -28730068 - ID_B1 SINE B4 -6 218 134 2 1295 998 301 58 20 chr11 93113788 93114328 -28729528 + Lx7 LINE L1 6754 7329 -367 2 1295 270 385 17 0 chr11 93114553 93114670 -28729186 + MIR SINE MIR 27 145 -117 2 1295 471 289 44 0 chr11 93114883 93114997 -28728859 + ID_B1 SINE B4 82 200 -24 2 1295 381 346 60 42 chr11 93115074 93115240 -28728616 - Tigger5 DNA MER2_type -2164 242 74 2 1295 275 304 120 0 chr11 93115348 93115440 -28728416 - MER5A1 DNA MER1_type -63 103 1 2 1295 508 229 26 90 chr11 93115527 93115711 -28728145 + B4A SINE B4 1 173 -51 2 1295 22 0 0 0 chr11 93115772 93115794 -28728062 + AT_rich Low_complexity Low_complexity 1 22 0 2 1295 407 233 23 145 chr11 93115821 93116042 -28727814 + MER33 DNA MER1_type 126 319 -5 2 1295 253 311 103 6 chr11 93116668 93116833 -28727023 - L1MCa LINE L1 -4374 2134 1954 2 1295 205 221 34 23 chr11 93117571 93117659 -28726197 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 1295 392 327 31 31 chr11 93117676 93117837 -28726019 - RSINE1 SINE B4 -1 164 4 2 1295 249 33 0 0 chr11 93118088 93118118 -28725738 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1295 514 226 126 24 chr11 93118338 93118465 -28725391 + RSINE1 SINE B4 24 163 -2 2 1295 2767 274 44 37 chr11 93119906 93120807 -28723049 - Lx7 LINE L1 -429 7267 6360 2 1295 351 0 0 0 chr11 93121880 93121919 -28721937 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1295 740 296 0 0 chr11 93121942 93122094 -28721762 - B3A SINE B2 -39 159 8 2 1295 320 64 0 21 chr11 93122376 93122424 -28721432 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1295 24 0 0 0 chr11 93123086 93123110 -28720746 + AT_rich Low_complexity Low_complexity 1 24 0 2 1295 21 0 0 0 chr11 93123234 93123255 -28720601 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 1100 70 0 0 chr11 93123375 93123517 -28720339 + L1_Mus1 LINE L1 6424 6565 -2 2 1295 207 114 0 0 chr11 93123565 93123600 -28720256 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1295 220 27 54 0 chr11 93123737 93123774 -28720082 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1295 634 238 0 85 chr11 93124483 93124648 -28719208 + B4A SINE B4 141 291 -1 2 1295 272 353 72 48 chr11 93125122 93125247 -28718609 - ID_B1 SINE B4 -41 183 56 2 1295 607 267 72 94 chr11 93126626 93126849 -28717007 - ID_B1 SINE B4 -5 219 2 2 1295 527 214 0 10 chr11 93127442 93127541 -28716315 + ORR1E LTR MaLR 33 130 -229 2 1295 789 11 0 0 chr11 93127555 93127645 -28716211 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1295 437 62 0 30 chr11 93127737 93127803 -28716053 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 2 1295 932 168 7 7 chr11 93127812 93127962 -28715894 - B1_Mur4 SINE Alu 0 150 1 2 1295 303 368 72 38 chr11 93128035 93128326 -28715530 - L1ME1 LINE L1 -60 6119 5819 2 1295 2563 148 54 69 chr11 93128908 93129445 -28714411 + RLTR24 LTR ERV1 1 529 0 2 1295 210 312 0 0 chr11 93130233 93130329 -28713527 + GA-rich Low_complexity Low_complexity 3 98 0 2 1295 353 259 124 63 chr11 93130330 93130662 -28713194 + HAL1-3A_ME LINE L1 2284 2444 -414 2 1295 203 188 20 20 chr11 93130662 93130711 -28713145 + GA-rich Low_complexity Low_complexity 6 54 0 2 1295 231 225 12 155 chr11 93130870 93130954 -28712902 - L2c LINE L2 -23 3364 3293 2 1295 194 159 45 0 chr11 93131497 93131541 -28712315 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 2 1295 240 122 0 0 chr11 93131537 93131578 -28712278 + (TTCTCC)n Simple_repeat Simple_repeat 1 41 0 2 1295 881 19 9 0 chr11 93132474 93132581 -28711275 + (GA)n Simple_repeat Simple_repeat 2 109 0 2 1295 200 284 38 104 chr11 93133682 93133788 -28710068 + MIR3 SINE MIR 110 208 0 2 1295 1042 306 101 36 chr11 93134627 93135065 -28708791 + MLT1C LTR MaLR 2 467 0 2 1295 209 57 0 28 chr11 93135122 93135158 -28708698 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1295 1305 219 151 11 chr11 93136209 93136573 -28707283 - MTD LTR MaLR 0 419 5 2 1295 198 376 11 21 chr11 93136662 93136757 -28707099 - L2a LINE L2 -24 3402 3309 2 1295 262 271 74 9 chr11 93136762 93136870 -28706986 - LTR33 LTR ERVL -21 494 380 2 1295 261 350 184 6 chr11 93137279 93137437 -28706419 - L2a LINE L2 -257 3169 2984 2 1295 23 68 0 0 chr11 93138282 93138326 -28705530 + AT_rich Low_complexity Low_complexity 1 44 0 2 1295 360 0 0 0 chr11 93138584 93138624 -28705232 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1295 270 0 0 0 chr11 93138624 93138653 -28705203 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1295 335 297 42 60 chr11 93138751 93138966 -28704890 - LTR50 LTR ERVL -2 793 583 2 1295 2187 127 63 73 chr11 93139296 93139694 -28704162 + ORR1B1 LTR MaLR 1 394 0 2 1295 421 318 69 36 chr11 93140791 93141065 -28702791 - B4A SINE B4 -8 284 2 2 1295 727 257 53 39 chr11 93142176 93142319 -28701537 - L1MA8 LINE L1 -120 6171 6018 2 1295 2044 171 136 29 chr11 93142319 93142796 -28701060 - RLTR12B LTR ERVK 0 528 1 2 1295 727 257 53 39 chr11 93142796 93143008 -28700848 - L1MA8 LINE L1 -274 6017 5812 2 1295 301 252 94 39 chr11 93144408 93144536 -28699320 - L1MC LINE L1 -2076 5806 5672 2 1295 1112 275 90 68 chr11 93144907 93145317 -28698539 - MTD LTR MaLR 0 419 1 2 1295 184 214 105 18 chr11 93145482 93145539 -28698317 - L3 LINE CR1 -2157 2332 2271 2 1295 540 327 57 13 chr11 93145825 93146054 -28697802 + MIR SINE MIR 21 259 -3 2 1295 695 187 104 115 chr11 93147580 93147858 -28695998 - Lx9 LINE L1 -1 7643 7369 2 1295 293 306 102 0 chr11 93147983 93148091 -28695765 - MER2 DNA MER2_type 0 345 227 2 1295 267 291 54 9 chr11 93148104 93148215 -28695641 - MER2 DNA MER2_type -153 192 77 2 1295 184 211 0 81 chr11 93148819 93148881 -28694975 + MIRb SINE MIR 202 258 -10 2 1295 693 0 0 0 chr11 93149146 93149223 -28694633 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 1295 2485 151 99 38 chr11 93149268 93149763 -28694093 + RLTR24 LTR ERV1 1 525 -4 2 1295 835 178 7 14 chr11 93150796 93150944 -28692912 + B1_Mur4 SINE Alu 1 147 -3 2 1295 403 260 223 52 chr11 93150960 93151171 -28692685 + B4A SINE B4 5 251 -41 2 1295 610 265 7 22 chr11 93151377 93151512 -28692344 + B1F SINE Alu 17 149 0 2 1295 24 32 0 0 chr11 93151555 93151586 -28692270 + AT_rich Low_complexity Low_complexity 1 31 0 2 1295 180 390 25 25 chr11 93152885 93153006 -28690850 + MIRc SINE MIR 5 125 -143 2 1295 1312 173 103 0 chr11 93153173 93153581 -28690275 - Lx9 LINE L1 -7 7637 7188 2 1295 723 202 17 23 chr11 93153575 93153747 -28690109 + Lx9 LINE L1 7016 7186 -458 2 1295 393 299 94 39 chr11 93153918 93154151 -28689705 + MIR SINE MIR 3 248 -14 2 1295 667 320 63 24 chr11 93154634 93154887 -28688969 + B4A SINE B4 24 286 -6 2 1295 1525 220 137 8 chr11 93154998 93155355 -28688501 - MTD LTR MaLR -14 405 3 2 1295 282 255 42 21 chr11 93155716 93155812 -28688044 + L1MC4a LINE L1 5355 5452 -672 2 1295 337 364 61 24 chr11 93155938 93156231 -28687625 + L1MC4a LINE L1 5583 5886 -1996 2 1295 1069 265 66 27 chr11 93157568 93158010 -28685846 + Lx8 LINE L1 6067 6525 -948 2 1295 221 335 98 37 chr11 93159010 93159224 -28684632 + L2 LINE L2 2852 3078 -341 2 1295 22 0 0 0 chr11 93159339 93159361 -28684495 + AT_rich Low_complexity Low_complexity 1 22 0 2 1295 1634 300 12 19 chr11 93159984 93160500 -28683356 - Lx5 LINE L1 -44 7006 6495 2 1295 604 282 51 36 chr11 93161605 93161618 -28682238 - B3A SINE B2 0 198 186 2 1295 483 100 0 0 chr11 93161618 93161688 -28682168 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1295 604 282 51 36 chr11 93161688 93161869 -28681987 - B3A SINE B2 -13 185 1 2 1295 195 139 0 0 chr11 93162901 93162937 -28680919 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1295 244 176 0 19 chr11 93162971 93163023 -28680833 + Lx9 LINE L1 5924 5974 -1670 2 1295 494 31 16 0 chr11 93163232 93163296 -28680560 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1295 369 0 0 0 chr11 93163296 93163336 -28680520 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1295 2325 252 64 38 chr11 93163338 93164106 -28679750 + Lx9 LINE L1 6341 7128 -516 2 1295 243 246 18 0 chr11 93164251 93164308 -28679548 + CT-rich Low_complexity Low_complexity 3 60 0 3 1295 2497 175 58 8 chr11 93166177 93166673 -28677183 - RLTR28 LTR ERVL 0 524 4 3 1295 312 248 16 142 chr11 93167630 93167757 -28676099 + MT2B LTR ERVL 154 264 -337 3 1295 890 192 7 0 chr11 93167646 93167792 -28676064 + B1_Mur3 SINE Alu 3 149 0 3 1295 748 280 142 9 chr11 93168274 93168679 -28675177 - L1_Mur2 LINE L1 -1701 4439 3971 3 1295 211 298 0 0 chr11 93169971 93170028 -28673828 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 3 1295 925 292 65 11 chr11 93170033 93170227 -28673629 - B4 SINE B4 0 292 92 3 1295 570 29 0 0 chr11 93170227 93170295 -28673561 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1295 925 292 65 11 chr11 93170295 93170377 -28673479 - B4 SINE B4 -201 91 1 3 1295 258 71 0 0 chr11 93170459 93170501 -28673355 + B1_Mur4 SINE Alu 108 149 -1 3 1295 252 143 0 0 chr11 93170502 93170544 -28673312 + (TAA)n Simple_repeat Simple_repeat 2 43 0 3 1295 371 325 17 8 chr11 93171440 93171558 -28672298 + RMER10B LTR ERVL 268 386 -12 3 1295 607 280 85 85 chr11 93171850 93172166 -28671690 + ORR1E LTR MaLR 1 316 -43 3 1295 444 341 103 10 chr11 93172466 93172670 -28671186 + B4A SINE B4 1 223 -69 3 1295 891 19 0 0 chr11 93172679 93172784 -28671072 + (TG)n Simple_repeat Simple_repeat 2 106 0 3 1295 801 96 0 0 chr11 93172842 93172967 -28670889 + (TG)n Simple_repeat Simple_repeat 1 125 0 3 1295 2634 158 72 81 chr11 93172968 93173539 -28670317 - RMER15 LTR ERVL -8 567 2 3 1295 504 0 0 0 chr11 93173540 93173596 -28670260 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1295 357 24 0 0 chr11 93173596 93173637 -28670219 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1295 255 79 0 0 chr11 93173638 93173676 -28670180 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 3 1295 23 68 0 0 chr11 93174462 93174506 -28669350 + AT_rich Low_complexity Low_complexity 1 44 0 3 1295 309 331 103 62 chr11 93175099 93175631 -28668225 + L3 LINE CR1 2142 2695 -1794 3 1295 443 214 42 67 chr11 93176372 93176537 -28667319 + Lx4B LINE L1 6888 7048 -10 3 1295 856 126 7 7 chr11 93176612 93176764 -28667092 + (TCTA)n Simple_repeat Simple_repeat 1 152 0 3 1295 3962 40 7 0 chr11 93178166 93178617 -28665239 - L1Md_F2 LINE L1 0 6582 6129 3 1295 6306 45 3 13 chr11 93178617 93179389 -28664467 - L1_Mm LINE L1 -121 5762 4999 3 1295 764 268 42 47 chr11 93179467 93179682 -28664174 + B3 SINE B2 3 216 0 3 1295 245 217 14 28 chr11 93179831 93179886 -28663970 - Lx9 LINE L1 -73 7571 7517 3 1295 567 29 0 0 chr11 93179886 93179955 -28663901 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1295 245 217 14 28 chr11 93179955 93179970 -28663886 - Lx9 LINE L1 -128 7516 7502 3 1295 571 263 22 14 chr11 93180103 93180242 -28663614 + B1F SINE Alu 3 142 -7 3 1295 215 339 0 0 chr11 93181511 93181629 -28662227 + T-rich Low_complexity Low_complexity 1 118 0 3 1295 1643 270 104 52 chr11 93181774 93182426 -28661430 - Lx8 LINE L1 -394 7079 6394 3 1295 529 285 131 8 chr11 93182424 93182668 -28661188 + L1_Mur3 LINE L1 4093 4366 -1514 3 1295 276 379 42 14 chr11 93182683 93182825 -28661031 + MER63A DNA AcHobo 22 167 -43 3 1295 252 0 0 0 chr11 93183738 93183766 -28660090 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1295 405 0 0 0 chr11 93184376 93184421 -28659435 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1295 418 179 13 13 chr11 93184421 93184574 -28659282 + (CAGAGA)n Simple_repeat Simple_repeat 4 156 0 3 1295 446 234 0 0 chr11 93184581 93184658 -28659198 - B1_Mur4 SINE Alu -61 89 13 3 1295 255 295 77 87 chr11 93184584 93184688 -28659168 - MT2B LTR ERVL -361 240 138 3 1295 273 57 0 0 chr11 93185745 93185780 -28658076 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 1295 22 0 0 0 chr11 93186367 93186389 -28657467 + AT_rich Low_complexity Low_complexity 1 22 0 3 1295 215 228 72 52 chr11 93186885 93186982 -28656874 + MIRm SINE MIR 79 177 -99 3 1295 2731 167 5 12 chr11 93187000 93187424 -28656432 + MTC LTR MaLR 1 421 0 3 1295 950 163 7 0 chr11 93187543 93187690 -28656166 - B1_Mus1 SINE Alu 0 148 1 3 1295 21 36 0 0 chr11 93187693 93187721 -28656135 + AT_rich Low_complexity Low_complexity 1 28 0 3 1295 685 299 17 11 chr11 93187736 93187915 -28655941 - B3A SINE B2 -18 180 1 3 1295 216 219 0 0 chr11 93188886 93188927 -28654929 - MIRb SINE MIR -66 202 162 3 1295 767 290 45 38 chr11 93190338 93190625 -28653231 + B4 SINE B4 2 290 -2 3 1295 218 0 94 0 chr11 93191565 93191597 -28652259 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1296 235 325 58 25 chr11 93192890 93193010 -28650846 - MIRb SINE MIR -129 139 16 3 1296 222 118 0 0 chr11 93194192 93194226 -28649630 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1296 218 354 62 8 chr11 93194644 93194772 -28649084 + L2b LINE L2 3224 3358 -17 3 1296 250 337 113 70 chr11 93196628 93196814 -28647042 + MIR SINE MIR 46 246 -22 3 1296 219 36 0 0 chr11 93197168 93197196 -28646660 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 3 1296 504 0 0 0 chr11 93197317 93197373 -28646483 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 3 1296 385 338 93 33 chr11 93198129 93198343 -28645513 - MLT1A0 LTR MaLR -138 227 1 3 1296 352 323 24 60 chr11 93199813 93199981 -28643875 - RSINE1 SINE B4 0 165 4 3 1296 8393 10 0 0 chr11 93200126 93201009 -28642847 + L1Md_A LINE L1 5699 6581 -1 3 1296 215 254 0 29 chr11 93201922 93201991 -28641865 + CT-rich Low_complexity Low_complexity 5 71 0 3 1296 642 244 89 0 chr11 93202410 93202545 -28641311 + RSINE1 SINE B4 2 148 -17 3 1296 455 107 13 0 chr11 93202840 93202915 -28640941 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 3 1296 503 162 133 13 chr11 93202915 93203065 -28640791 - Lx4A LINE L1 -1 7057 6890 3 1296 234 204 0 0 chr11 93203176 93203225 -28640631 - L1M6 LINE L1 -4525 1971 1923 3 1296 192 241 0 0 chr11 93203616 93203674 -28640182 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1296 596 319 99 36 chr11 93203797 93204100 -28639756 - MLT1D LTR MaLR -16 489 168 3 1296 4773 52 6 0 chr11 93204100 93204717 -28639139 - L1Md_F2 LINE L1 -419 6163 5544 3 1296 444 37 0 0 chr11 93205079 93205133 -28638723 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1296 360 280 15 15 chr11 93206550 93206684 -28637172 - Lx9 LINE L1 0 7644 7511 3 1296 362 115 0 16 chr11 93206686 93206748 -28637108 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1296 338 295 132 18 chr11 93208044 93208158 -28635698 + MLT1G1 LTR MaLR 234 360 -219 3 1296 181 167 37 0 chr11 93209147 93209201 -28634655 + T-rich Low_complexity Low_complexity 5 60 0 3 1296 192 245 0 0 chr11 93209219 93209272 -28634584 + CT-rich Low_complexity Low_complexity 1 53 0 3 1296 338 115 16 0 chr11 93209435 93209496 -28634360 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1296 7369 151 89 13 chr11 93209641 93210993 -28632863 - Lx3C LINE L1 0 6976 5546 3 1296 845 251 82 0 chr11 93211404 93211599 -28632257 - B3 SINE B2 0 216 6 3 1296 25 31 0 0 chr11 93211703 93211735 -28632121 + AT_rich Low_complexity Low_complexity 1 32 0 3 1296 378 0 0 0 chr11 93211789 93211831 -28632025 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1296 224 340 9 28 chr11 93213155 93213261 -28630595 - MIRb SINE MIR -1 267 164 3 1296 722 303 33 0 chr11 93213318 93213529 -28630327 - ID_B1 SINE B4 -6 218 1 3 1296 478 312 84 5 chr11 93213549 93213752 -28630104 + MER20 DNA MER1_type 1 219 0 3 1296 276 179 0 0 chr11 93213915 93213993 -28629863 + (TCTCTG)n Simple_repeat Simple_repeat 1 78 0 3 1296 1017 101 0 0 chr11 93213993 93214172 -28629684 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1296 461 259 9 27 chr11 93214172 93214283 -28629573 - RSINE1 SINE B4 -23 142 34 3 1296 417 298 67 80 chr11 93214291 93214670 -28629186 + L1MD3 LINE L1 5744 6111 -68 3 1296 192 125 0 0 chr11 93215452 93215484 -28628372 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 3 1296 227 322 34 0 chr11 93216107 93216225 -28627631 - Lx9 LINE L1 -7 7637 7516 3 1296 888 235 50 0 chr11 93216222 93216422 -28627434 + Lx9 LINE L1 7303 7512 -132 3 1296 2190 169 10 36 chr11 93217145 93217533 -28626323 - ORR1C1 LTR MaLR 0 378 1 3 1296 207 69 0 0 chr11 93218186 93218215 -28625641 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1296 276 316 0 31 chr11 93218420 93218518 -28625338 + PB1D10 SINE Alu 23 117 0 3 1296 792 55 0 0 chr11 93219949 93220059 -28623797 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 3 1296 784 294 33 47 chr11 93220112 93220387 -28623469 + B4A SINE B4 1 271 -21 3 1296 414 57 0 0 chr11 93220387 93220440 -28623416 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1296 1117 278 113 19 chr11 93220694 93221057 -28622799 + MTD LTR MaLR 8 404 -15 3 1296 306 88 14 29 chr11 93221071 93221141 -28622715 + (TTTTTA)n Simple_repeat Simple_repeat 2 70 0 3 1296 7028 74 72 2 chr11 93221145 93222525 -28621331 - L1_Mus2 LINE L1 0 6566 5120 3 1296 195 42 0 0 chr11 93223006 93223030 -28620826 + (CCA)n Simple_repeat Simple_repeat 3 26 0 3 1296 282 412 0 26 chr11 93223237 93223354 -28620502 - MIR SINE MIR -68 140 27 3 1296 620 347 122 64 chr11 93223359 93223940 -28619916 + Tigger7 DNA MER2_type 8 622 -1869 3 1296 531 69 0 0 chr11 93224436 93224508 -28619348 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1296 333 0 0 0 chr11 93224510 93224547 -28619309 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1296 2244 180 35 58 chr11 93224708 93225139 -28618717 - MTC LTR MaLR 0 421 1 3 1296 252 0 0 0 chr11 93225781 93225809 -28618047 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 3 1296 426 20 0 0 chr11 93225828 93225879 -28617977 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1296 845 285 60 11 chr11 93226340 93226606 -28617250 - B4 SINE B4 -10 282 4 4 1296 439 272 115 5 chr11 93226804 93226996 -28616860 - L2a LINE L2 0 3426 3214 4 1296 303 316 34 97 chr11 93228230 93228405 -28615451 + MER21B LTR ERV1 147 310 -553 4 1296 342 383 11 48 chr11 93229547 93229736 -28614120 + MLT1A LTR MaLR 10 191 -183 4 1296 282 29 0 0 chr11 93230658 93230693 -28613163 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1296 351 0 0 0 chr11 93230693 93230731 -28613125 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1296 901 189 48 102 chr11 93231472 93231678 -28612178 - Lx9 LINE L1 0 7644 7459 4 1296 525 44 0 0 chr11 93231678 93231746 -28612110 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 4 1296 901 189 48 102 chr11 93231746 93231874 -28611982 - Lx9 LINE L1 -186 7458 7328 4 1296 696 151 176 0 chr11 93232595 93232754 -28611102 + Lx3C LINE L1 6788 6974 -2 4 1296 21 0 0 0 chr11 93232786 93232807 -28611049 + AT_rich Low_complexity Low_complexity 1 21 0 4 1296 212 328 120 15 chr11 93234080 93234213 -28609643 - MIRc SINE MIR -17 251 105 4 1296 522 273 35 28 chr11 93234280 93234423 -28609433 - B1F SINE Alu -3 146 3 4 1296 261 0 0 0 chr11 93237045 93237074 -28606782 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1296 196 383 40 55 chr11 93237930 93238129 -28605727 - MIRb SINE MIR -21 247 52 4 1296 244 162 0 0 chr11 93238191 93238228 -28605628 + MIR SINE MIR 77 113 -149 4 1296 506 312 139 23 chr11 93238849 93239108 -28604748 + B4A SINE B4 4 292 0 4 1296 572 0 15 0 chr11 93239144 93239212 -28604644 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 4 1296 532 284 82 43 chr11 93239585 93239969 -28603887 - L1MA5A LINE L1 -241 6059 5653 4 1296 596 231 12 6 chr11 93239973 93240144 -28603712 - L1MA5A LINE L1 -1340 4800 4604 4 1296 234 241 35 0 chr11 93240393 93240451 -28603405 - L2a LINE L2 -18 3408 3349 4 1296 287 286 17 40 chr11 93241406 93241525 -28602331 - MIR SINE MIR -105 171 49 4 1296 407 290 222 21 chr11 93242143 93242469 -28601387 - MER96B DNA hAT -25 392 1 4 1296 354 344 49 31 chr11 93242621 93242783 -28601073 - Charlie17a DNA MER1_type -13 206 42 4 1296 402 250 9 46 chr11 93242845 93242954 -28600902 - Kanga1c DNA Tc2 -619 110 6 4 1296 887 184 119 46 chr11 93243340 93243534 -28600322 + B3 SINE B2 2 209 -7 4 1296 22 0 0 0 chr11 93243538 93243560 -28600296 + AT_rich Low_complexity Low_complexity 1 22 0 4 1296 656 189 135 19 chr11 93243714 93243870 -28599986 - MTD LTR MaLR -245 174 1 4 1296 1382 82 49 0 chr11 93244473 93244656 -28599200 - B2_Mm2 SINE B2 -3 192 1 4 1296 355 245 104 0 chr11 93244657 93244763 -28599093 + MIR SINE MIR 121 237 -25 4 1296 491 341 96 47 chr11 93245830 93246193 -28597663 - MLT1F LTR MaLR -13 535 155 4 1296 304 268 52 0 chr11 93246210 93246307 -28597549 - MLT1C LTR MaLR -7 460 359 4 1296 862 247 53 0 chr11 93246302 93246472 -28597384 + B3 SINE B2 13 191 -25 4 1296 23 0 0 0 chr11 93246549 93246572 -28597284 + AT_rich Low_complexity Low_complexity 1 23 0 4 1296 1237 299 61 48 chr11 93246654 93246747 -28597109 - L1MA4A LINE L1 -285 6015 5926 4 1296 264 30 0 0 chr11 93246747 93246780 -28597076 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 1296 1343 299 61 48 chr11 93246780 93247388 -28596468 - L1MA4A LINE L1 -374 5929 5305 4 1296 708 250 21 0 chr11 93247436 93247576 -28596280 + B1F1 SINE Alu 6 148 -1 4 1296 417 156 0 0 chr11 93248192 93248269 -28595587 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1296 3218 30 8 3 chr11 93248292 93248657 -28595199 + L1Md_F3 LINE L1 6204 6570 -14 4 1296 623 366 5 5 chr11 93248671 93248888 -28594968 - B4 SINE B4 0 292 76 4 1296 378 0 0 0 chr11 93248903 93248945 -28594911 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1296 291 316 0 0 chr11 93248945 93249024 -28594832 - B4A SINE B4 -213 79 1 4 1296 234 148 0 0 chr11 93249073 93249127 -28594729 + (A)n Simple_repeat Simple_repeat 1 54 0 4 1296 338 304 42 28 chr11 93249389 93249531 -28594325 + B4A SINE B4 2 145 -147 4 1296 458 159 11 0 chr11 93250829 93250917 -28592939 + CT-rich Low_complexity Low_complexity 2 90 0 4 1296 281 280 0 39 chr11 93252133 93252211 -28591645 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1296 872 305 83 12 chr11 93252226 93252478 -28591378 - B4A SINE B4 -16 276 7 4 1296 946 90 6 6 chr11 93252840 93252997 -28590859 + (TG)n Simple_repeat Simple_repeat 1 157 0 4 1296 229 254 56 0 chr11 93252998 93253069 -28590787 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 4 1296 437 319 54 7 chr11 93253088 93253305 -28590551 - B4A SINE B4 -21 271 2 4 1296 638 176 0 7 chr11 93253405 93253554 -28590302 + (TAGA)n Simple_repeat Simple_repeat 3 150 0 4 1296 501 17 0 0 chr11 93253730 93253788 -28590068 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1296 1598 238 32 0 chr11 93254690 93255035 -28588821 - Lx8 LINE L1 -750 6723 6368 4 1296 22 35 0 0 chr11 93255791 93255820 -28588036 + AT_rich Low_complexity Low_complexity 1 29 0 4 1296 22 70 0 0 chr11 93256138 93256181 -28587675 + AT_rich Low_complexity Low_complexity 1 43 0 4 1296 253 350 108 18 chr11 93256342 93256508 -28587348 + MIRc SINE MIR 20 200 -68 4 1296 594 332 98 22 chr11 93256511 93256736 -28587120 + B4 SINE B4 2 243 -49 4 1296 1800 165 40 6 chr11 93256741 93257065 -28586791 - ORR1B1 LTR MaLR -8 386 52 4 1296 206 235 0 19 chr11 93257332 93257384 -28586472 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1296 240 246 0 0 chr11 93257724 93257793 -28586063 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1296 203 267 32 32 chr11 93257798 93257860 -28585996 + (CATG)n Simple_repeat Simple_repeat 3 64 0 4 1296 212 250 0 0 chr11 93257814 93257858 -28585998 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1296 501 235 0 0 chr11 93257870 93258023 -28585833 + (TG)n Simple_repeat Simple_repeat 2 154 0 4 1296 213 358 62 21 chr11 93258636 93258733 -28585123 - MIRb SINE MIR -139 129 29 4 1296 882 179 0 0 chr11 93258890 93259058 -28584798 + CT-rich Low_complexity Low_complexity 1 168 0 4 1296 1335 20 0 0 chr11 93259721 93259868 -28583988 + B1_Mm SINE Alu 1 147 0 4 1296 191 316 150 50 chr11 93260557 93260857 -28582999 - L3 LINE CR1 -3 4486 4157 4 1296 380 285 104 31 chr11 93261280 93261443 -28582413 - MIRb SINE MIR -50 218 44 4 1296 396 0 0 0 chr11 93261802 93261846 -28582010 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1296 225 0 0 0 chr11 93261966 93261991 -28581865 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1296 189 0 0 0 chr11 93261989 93262010 -28581846 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 1296 3433 249 49 4 chr11 93262028 93262829 -28581027 - Lx8 LINE L1 -295 7178 6342 4 1296 606 260 6 93 chr11 93262864 93263025 -28580831 + B1F SINE Alu 2 148 -1 4 1296 225 0 0 0 chr11 93263044 93263069 -28580787 + (CAA)n Simple_repeat Simple_repeat 2 26 0 4 1296 433 191 42 21 chr11 93263148 93263244 -28580612 + B1F SINE Alu 18 115 -34 4 1296 910 294 78 0 chr11 93263745 93264014 -28579842 - MER2 DNA MER2_type -55 290 1 4 1296 333 0 0 0 chr11 93264346 93264383 -28579473 + (TAA)n Simple_repeat Simple_repeat 2 38 0 4 1296 289 342 26 9 chr11 93264524 93264639 -28579217 + B4A SINE B4 169 285 -7 4 1296 378 0 0 0 chr11 93264663 93264705 -28579151 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1296 263 255 177 62 chr11 93265558 93265671 -28578185 - RLTR42-int LTR ERVK -4141 1381 1256 4 1296 390 42 0 0 chr11 93266650 93266698 -28577158 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1296 480 234 38 98 chr11 93268024 93268160 -28575696 - B1_Mur2 SINE Alu -4 145 21 4 1296 1999 132 134 37 chr11 93268160 93268498 -28575358 + BGLII_B LTR ERVK 1 333 -108 4 1296 504 0 0 0 chr11 93268498 93268554 -28575302 + (TAGTG)n Simple_repeat Simple_repeat 1 56 0 4 1296 1999 132 134 37 chr11 93268554 93268617 -28575239 + BGLII_B LTR ERVK 334 440 -1 4 1296 465 257 31 125 chr11 93268617 93268640 -28575216 - B1F2 SINE Alu -129 20 1 4 1296 406 299 26 89 chr11 93268996 93269187 -28574669 + MIR SINE MIR 29 207 -55 4 1296 1094 72 0 0 chr11 93269280 93269418 -28574438 - L1_Mus1 LINE L1 -265 6302 6165 4 1296 34110 48 10 1 chr11 93269607 93274531 -28569325 - L1Md_F3 LINE L1 0 6584 1613 4 1296 990 37 0 0 chr11 93274531 93274638 -28569218 - U6 snRNA snRNA 0 107 1 4 1296 34110 49 12 1 chr11 93274638 93274649 -28569207 - L1Md_F3 LINE L1 -4271 1612 1604 4 1296 502 298 66 15 chr11 93275049 93275308 -28568548 - MER96B DNA hAT -145 272 1 4 1296 1719 109 48 4 chr11 93275340 93275589 -28568267 - L1_Mus4 LINE L1 0 6636 6377 4 1296 339 68 0 0 chr11 93275589 93275633 -28568223 + Lx LINE L1 6345 6388 -266 4 1296 235 241 22 132 chr11 93275658 93275749 -28568107 + MIRc SINE MIR 36 116 -152 4 1296 215 61 30 0 chr11 93275751 93275784 -28568072 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 4 1296 271 296 46 46 chr11 93275839 93275970 -28567886 - L2a LINE L2 -1 3425 3295 4 1296 201 179 0 49 chr11 93277309 93277350 -28566506 - L2a LINE L2 -18 3408 3370 4 1296 1608 148 88 42 chr11 93277523 93277854 -28566002 - Lx2 LINE L1 -1 6996 6651 4 1296 625 352 88 37 chr11 93277870 93278419 -28565437 - L2a LINE L2 -299 3127 2558 4 1296 488 305 37 41 chr11 93278421 93278664 -28565192 + Lx9 LINE L1 7215 7456 -188 4 1296 366 42 0 0 chr11 93278664 93278712 -28565144 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1296 258 357 80 26 chr11 93278712 93278832 -28565024 + Lx8 LINE L1 7328 7467 -6 4 1296 21 57 0 0 chr11 93278879 93278914 -28564942 + AT_rich Low_complexity Low_complexity 1 35 0 4 1296 192 161 0 0 chr11 93279059 93279090 -28564766 + MIRb SINE MIR 52 82 -186 4 1296 354 98 0 0 chr11 93279115 93279166 -28564690 + (TCCA)n Simple_repeat Simple_repeat 4 54 0 4 1296 1778 273 54 13 chr11 93279166 93279644 -28564212 - Lx6 LINE L1 -28 7432 6935 4 1296 365 156 0 0 chr11 93280029 93280093 -28563763 - L1Md_F LINE L1 -6282 237 174 5 1296 843 211 5 11 chr11 93280093 93280280 -28563576 - L1Md_F LINE L1 -6282 237 52 5 1296 237 296 73 36 chr11 93281169 93281334 -28562522 - MIRc SINE MIR -35 233 63 5 1296 194 348 42 32 chr11 93281530 93281625 -28562231 + MIR3 SINE MIR 87 182 -26 5 1296 471 35 0 0 chr11 93281757 93281814 -28562042 + (GTTTG)n Simple_repeat Simple_repeat 3 59 0 5 1296 228 276 0 0 chr11 93281906 93281964 -28561892 - MIRm SINE MIR -133 143 86 5 1296 1377 121 8 75 chr11 93282267 93282508 -28561348 + URR1B DNA MER1_type 1 225 0 5 1296 369 0 0 0 chr11 93282699 93282740 -28561116 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1296 318 313 89 18 chr11 93282912 93283081 -28560775 - MER20 DNA MER1_type 0 219 39 5 1296 353 288 61 7 chr11 93283898 93284045 -28559811 + MIRc SINE MIR 112 266 -2 5 1296 205 284 0 0 chr11 93284123 93284179 -28559677 - MIRc SINE MIR -138 138 83 5 1296 189 213 0 0 chr11 93284992 93285039 -28558817 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1296 611 279 114 50 chr11 93285786 93286163 -28557693 - MER63B DNA AcHobo -6 430 30 5 1296 356 310 47 40 chr11 93287882 93288030 -28555826 + MIRb SINE MIR 3 151 -117 5 1296 315 0 0 0 chr11 93288315 93288350 -28555506 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 5 1296 631 204 35 7 chr11 93288352 93288495 -28555361 - B1_Mus1 SINE Alu -1 147 1 5 1296 1126 187 130 93 chr11 93288620 93288974 -28554882 - ORR1D1 LTR MaLR -5 369 3 5 1296 9680 47 2 0 chr11 93289069 93290945 -28552911 - L1Md_F2 LINE L1 -1 6581 4704 5 1296 390 306 129 70 chr11 93291839 93292212 -28551644 - L1ME3 LINE L1 -70 6092 5698 5 1296 188 309 14 29 chr11 93292282 93292352 -28551504 + MIR SINE MIR 81 149 -59 5 1296 312 27 0 0 chr11 93293349 93293386 -28550470 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1296 528 59 0 0 chr11 93293624 93293692 -28550164 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 1296 292 298 79 15 chr11 93293855 93294027 -28549829 + L1ME1 LINE L1 5927 6112 -66 5 1296 213 384 68 5 chr11 93294077 93294215 -28549641 + MER5A DNA MER1_type 36 189 0 5 1296 578 331 46 33 chr11 93295105 93295411 -28548445 + Lx8 LINE L1 7133 7442 -31 5 1296 414 236 182 24 chr11 93295501 93295666 -28548190 - Lx8 LINE L1 -2 7471 7281 5 1296 290 312 49 63 chr11 93296134 93296339 -28547517 - L4 LINE RTE -1637 392 191 5 1296 206 254 31 16 chr11 93297124 93297188 -28546668 - MIR SINE MIR -35 227 163 5 1296 195 237 102 0 chr11 93298807 93298866 -28544990 - MIRc SINE MIR -108 160 96 5 1296 397 306 58 12 chr11 93300299 93300471 -28543385 + MER104 DNA Tc2 1 180 -1 5 1296 381 188 0 0 chr11 93300536 93300616 -28543240 + CT-rich Low_complexity Low_complexity 2 81 0 5 1296 642 314 54 57 chr11 93300679 93301050 -28542806 - L1MB7 LINE L1 -87 6097 5728 5 1296 201 195 24 0 chr11 93301050 93301091 -28542765 + CT-rich Low_complexity Low_complexity 2 43 0 5 1296 923 279 61 22 chr11 93301112 93301390 -28542466 - B4A SINE B4 -2 290 2 5 1296 926 289 51 23 chr11 93301392 93301742 -28542114 - L1MB7 LINE L1 -449 5735 5376 5 1296 256 314 113 86 chr11 93301831 93302148 -28541708 + MLT1H LTR MaLR 11 414 -135 5 1296 468 150 0 0 chr11 93302948 93303028 -28540828 + (GGA)n Simple_repeat Simple_repeat 3 82 0 5 1296 1253 282 37 19 chr11 93303619 93304181 -28539675 + L1MA4 LINE L1 5397 5946 -1527 5 1296 330 280 0 0 chr11 93304373 93304448 -28539408 + B4 SINE B4 3 77 -215 5 1296 356 186 112 10 chr11 93304449 93304547 -28539309 + Lx9 LINE L1 7537 7644 0 5 1296 297 392 77 5 chr11 93304555 93304750 -28539106 + B4 SINE B4 82 290 -2 5 1296 344 59 20 0 chr11 93305038 93305089 -28538767 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1296 216 0 0 0 chr11 93306971 93306995 -28536861 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1296 1498 262 98 38 chr11 93307405 93308036 -28535820 + L1MA6 LINE L1 5630 6298 -2 5 1296 223 349 12 0 chr11 93308517 93308600 -28535256 + MIR SINE MIR 46 129 -79 5 1296 687 190 0 0 chr11 93309481 93309618 -28534238 + (TATATG)n Simple_repeat Simple_repeat 4 140 0 5 1296 380 306 83 13 chr11 93310416 93310619 -28533237 + MIRb SINE MIR 2 218 -50 5 1296 1232 204 0 18 chr11 93310621 93310850 -28533006 - URR1B DNA MER1_type 0 225 1 5 1296 206 245 19 0 chr11 93311072 93311125 -28532731 - L2b LINE L2 0 3375 3322 5 1296 245 376 14 22 chr11 93311207 93311361 -28532495 - MIRm SINE MIR -116 160 2 5 1296 180 369 100 7 chr11 93314479 93314629 -28529227 - MIRb SINE MIR -8 260 97 5 1296 242 257 40 13 chr11 93314770 93314845 -28529011 - MTEb LTR MaLR -21 358 282 5 1296 2204 202 106 19 chr11 93314893 93315433 -28528423 + Lx9 LINE L1 7057 7643 -1 5 1296 477 286 53 0 chr11 93315684 93315817 -28528039 + MER58A DNA MER1_type 1 140 -84 5 1296 800 48 9 0 chr11 93316136 93316241 -28527615 + (TC)n Simple_repeat Simple_repeat 1 106 0 5 1296 248 309 0 0 chr11 93316255 93316323 -28527533 - ID4_ SINE ID -14 69 2 5 1296 2406 75 9 58 chr11 93318176 93318518 -28525338 - ORR1A2 LTR MaLR 0 327 3 5 1296 216 322 67 34 chr11 93319411 93319530 -28524326 + L2 LINE L2 2398 2520 -899 5 1296 279 0 0 0 chr11 93319968 93319999 -28523857 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5 1296 1082 309 94 18 chr11 93320170 93320605 -28523251 - Lx8 LINE L1 -218 7255 6788 5 1296 530 317 82 3 chr11 93320644 93320938 -28522918 + Charlie5 DNA MER1_type 2280 2596 -28 5 1296 241 336 81 9 chr11 93320987 93321098 -28522758 + LTR16C LTR ERVL 298 416 -73 5 1296 286 258 135 2 chr11 93321645 93321747 -28522109 - B1F2 SINE Alu -2 115 1 5 1296 210 118 0 0 chr11 93322709 93322743 -28521113 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1296 225 0 0 0 chr11 93322757 93322782 -28521074 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1297 198 0 0 0 chr11 93323499 93323521 -28520335 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1297 225 356 87 0 chr11 93323634 93323738 -28520118 - MIR SINE MIR -98 164 52 5 1297 260 314 50 8 chr11 93324414 93324572 -28519284 + MIRb SINE MIR 21 199 -69 5 1297 1031 123 0 40 chr11 93324875 93325052 -28518804 - B2_Mm2 SINE B2 -25 170 1 5 1297 254 304 17 9 chr11 93325253 93325369 -28518487 - MIR SINE MIR -44 218 102 5 1297 184 361 0 0 chr11 93325963 93326035 -28517821 + MIRc SINE MIR 67 138 -130 5 1297 267 31 0 0 chr11 93326181 93326213 -28517643 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1297 1221 106 0 0 chr11 93326632 93326812 -28517044 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1297 222 207 0 0 chr11 93327320 93327378 -28516478 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1297 342 0 0 0 chr11 93328013 93328051 -28515805 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1297 241 258 132 8 chr11 93328670 93328799 -28515057 - Lx8 LINE L1 -33 7440 7296 5 1297 252 86 0 0 chr11 93328810 93328845 -28515011 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1297 237 240 5 16 chr11 93328952 93329025 -28514831 + L1MD3 LINE L1 7793 7851 -144 5 1297 497 319 91 21 chr11 93329225 93329468 -28514388 + ORR1E LTR MaLR 100 359 0 5 1297 284 277 6 0 chr11 93329591 93329768 -28514088 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1297 354 274 0 0 chr11 93329803 93329960 -28513896 + (CA)n Simple_repeat Simple_repeat 2 158 0 5 1297 764 281 40 4 chr11 93329988 93330238 -28513618 - L1MA4 LINE L1 -364 5936 5678 5 1297 731 189 6 30 chr11 93330271 93330435 -28513421 + L1MD3 LINE L1 7836 7995 0 5 1297 428 250 6 0 chr11 93330573 93330749 -28513107 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1297 406 204 125 0 chr11 93330829 93330917 -28512939 + RSINE1 SINE B4 3 101 -64 5 1297 377 0 0 40 chr11 93331359 93331409 -28512447 + (TTA)n Simple_repeat Simple_repeat 2 49 0 5 1297 203 308 0 0 chr11 93331597 93331649 -28512207 - MIRm SINE MIR -138 138 87 5 1297 792 122 0 0 chr11 93332004 93332127 -28511729 + (GA)n Simple_repeat Simple_repeat 2 124 0 5 1297 438 20 0 0 chr11 93332661 93332712 -28511144 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1297 513 32 0 0 chr11 93332712 93332775 -28511081 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1297 328 282 29 44 chr11 93333803 93333940 -28509916 + MER104 DNA Tc2 37 171 -10 5 1297 378 120 0 0 chr11 93334539 93334614 -28509242 + (A)n Simple_repeat Simple_repeat 1 75 0 5 1297 313 279 87 41 chr11 93335069 93335241 -28508615 + MIRc SINE MIR 37 216 -52 5 1297 199 323 81 0 chr11 93335590 93335689 -28508167 + MIR SINE MIR 101 207 -55 5 1297 224 247 99 49 chr11 93335835 93335916 -28507940 + B4A SINE B4 2 86 -206 5 1297 242 279 12 25 chr11 93335935 93336016 -28507840 + ID2 SINE ID 1 80 -3 5 1297 6927 197 31 28 chr11 93336048 93336997 -28506859 - Lx5 LINE L1 -89 6961 5991 5 1297 507 17 0 0 chr11 93336997 93337057 -28506799 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1297 6927 181 14 6 chr11 93337057 93337778 -28506078 - Lx5 LINE L1 -1060 5990 5280 5 1297 1185 252 75 75 chr11 93337821 93338298 -28505558 - Lx8 LINE L1 -34 7439 6963 5 1297 548 295 55 30 chr11 93338326 93338525 -28505331 + B4A SINE B4 89 292 0 5 1297 3021 76 10 20 chr11 93339135 93339539 -28504317 - MTB LTR MaLR 0 400 1 5 1297 693 308 59 7 chr11 93339758 93340046 -28503810 - MER2 DNA MER2_type -42 303 1 5 1297 825 227 35 19 chr11 93340061 93340317 -28503539 + Charlie5 DNA MER1_type 2362 2621 -3 5 1297 29 0 0 0 chr11 93341948 93341977 -28501879 + AT_rich Low_complexity Low_complexity 1 29 0 5 1297 389 265 177 45 chr11 93343148 93343283 -28500573 + Lx8 LINE L1 7171 7327 -146 5 1297 216 0 0 0 chr11 93343283 93343307 -28500549 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1297 389 265 177 45 chr11 93343307 93343436 -28500420 + Lx8 LINE L1 7328 7469 -4 5 1297 530 302 45 61 chr11 93343505 93343615 -28500241 - Lx7 LINE L1 -374 5926 5779 6 1297 212 0 0 35 chr11 93343623 93343652 -28500204 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1297 718 167 35 48 chr11 93343652 93343788 -28500068 - B1_Mus1 SINE Alu -9 139 6 6 1297 530 302 44 61 chr11 93343788 93343824 -28500032 - Lx7 LINE L1 -1695 5778 5747 6 1297 324 0 0 0 chr11 93343824 93343860 -28499996 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1297 621 192 38 50 chr11 93343860 93343936 -28499920 - Lx7 LINE L1 -1727 5746 5672 6 1297 1360 164 292 33 chr11 93343936 93344302 -28499554 + RMER6B LTR ERVK 1 461 0 6 1297 621 237 62 51 chr11 93344302 93344438 -28499418 - Lx7 LINE L1 -593 5707 5549 6 1297 1898 166 23 3 chr11 93344680 93345030 -28498826 - Lx LINE L1 -4 6650 6294 6 1297 249 302 82 36 chr11 93345920 93346030 -28497826 + MIRb SINE MIR 94 208 -60 6 1297 227 307 119 89 chr11 93346263 93346337 -28497519 + MTEa LTR MaLR 3 86 -273 6 1297 621 69 0 19 chr11 93346337 93346440 -28497416 + L1Md_F2 LINE L1 6482 6582 0 6 1297 257 294 49 124 chr11 93346440 93346673 -28497183 + MTEa LTR MaLR 87 335 -44 6 1297 299 279 104 37 chr11 93346889 93347023 -28496833 - L1MA5 LINE L1 -297 6003 5861 6 1297 180 0 0 0 chr11 93347080 93347100 -28496756 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1297 258 152 68 0 chr11 93347192 93347251 -28496605 + MIR SINE MIR 84 146 -116 6 1297 381 312 9 9 chr11 93347265 93347375 -28496481 + PB1D10 SINE Alu 6 115 -2 6 1297 545 171 0 0 chr11 93347383 93347471 -28496385 + (CAGAGA)n Simple_repeat Simple_repeat 3 90 0 6 1297 715 277 20 20 chr11 93347824 93348023 -28495833 + B4A SINE B4 6 204 -88 6 1297 180 77 0 0 chr11 93349226 93349252 -28494604 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1297 218 225 103 82 chr11 93349728 93349825 -28494031 + L2c LINE L2 3289 3387 0 6 1297 270 0 0 0 chr11 93349855 93349885 -28493971 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 6 1297 454 311 29 7 chr11 93350209 93350453 -28493403 - L1MB2 LINE L1 -17 6166 5914 6 1297 180 247 103 82 chr11 93350689 93350786 -28493070 - L2c LINE L2 0 3387 3289 6 1297 1107 123 128 0 chr11 93352233 93352428 -28491428 - URR1A DNA MER1_type 0 226 7 6 1297 216 0 0 0 chr11 93353237 93353261 -28490595 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1297 231 330 61 10 chr11 93353361 93353459 -28490397 + MIRc SINE MIR 28 130 -138 6 1297 378 315 0 0 chr11 93354260 93354371 -28489485 + PB1D10 SINE Alu 1 111 -6 6 1297 1160 106 6 0 chr11 93354379 93354558 -28489298 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1297 489 34 0 0 chr11 93354560 93354619 -28489237 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 6 1297 317 117 17 0 chr11 93354940 93355000 -28488856 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1297 302 335 81 29 chr11 93355195 93355404 -28488452 + L3 LINE CR1 4154 4373 -116 6 1297 405 0 0 0 chr11 93356441 93356486 -28487370 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1297 906 242 50 0 chr11 93357202 93357400 -28486456 + B3 SINE B2 1 208 -8 6 1297 251 347 20 96 chr11 93357759 93358008 -28485848 - L2a LINE L2 -69 3357 3128 6 1297 640 259 85 0 chr11 93359474 93359663 -28484193 + B3 SINE B2 5 209 -7 6 1297 199 333 75 9 chr11 93359999 93360105 -28483751 - MIRc SINE MIR -149 119 7 6 1297 568 307 35 63 chr11 93360499 93360753 -28483103 + B4A SINE B4 2 248 -44 6 1297 1241 225 127 21 chr11 93360757 93361134 -28482722 - MTD LTR MaLR -2 417 1 6 1297 280 327 10 10 chr11 93361159 93361261 -28482595 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1297 256 326 47 54 chr11 93362397 93362546 -28481310 - MIRb SINE MIR -79 189 42 6 1297 234 378 17 59 chr11 93363449 93363567 -28480289 + MIR SINE MIR 66 178 -84 6 1297 242 314 14 0 chr11 93363809 93363879 -28479977 + Lx8 LINE L1 7034 7104 -369 6 1297 370 207 32 65 chr11 93364016 93364109 -28479747 + RMER15 LTR ERVL 422 511 -64 6 1297 508 324 142 34 chr11 93364581 93364910 -28478946 + MLT1A1 LTR MaLR 48 404 -4 6 1297 341 282 25 25 chr11 93365220 93365340 -28478516 - L1M2 LINE L1 -702 5595 5476 6 1297 791 320 0 15 chr11 93365361 93365634 -28478222 + L1MA4A LINE L1 5662 5930 -373 6 1297 357 293 10 10 chr11 93366306 93366406 -28477450 - PB1D10 SINE Alu -12 105 6 6 1297 306 0 0 0 chr11 93367186 93367220 -28476636 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1297 2477 71 29 12 chr11 93367375 93367715 -28476141 - L1Md_F2 LINE L1 -12 6570 6225 6 1297 2290 136 43 10 chr11 93367771 93368166 -28475690 - MTC LTR MaLR -13 408 1 6 1297 610 294 42 48 chr11 93368190 93368379 -28475477 - ID_B1 SINE B4 -24 200 13 6 1297 238 211 63 38 chr11 93368664 93368743 -28475113 + MTC LTR MaLR 1 81 -340 6 1297 318 26 0 0 chr11 93369113 93369152 -28474704 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1297 1016 264 34 65 chr11 93369158 93369450 -28474406 - B4A SINE B4 -9 283 1 6 1297 965 109 19 0 chr11 93370081 93370237 -28473619 + (GGAGA)n Simple_repeat Simple_repeat 4 162 0 6 1297 24 53 0 0 chr11 93370673 93370711 -28473145 + AT_rich Low_complexity Low_complexity 1 38 0 6 1297 405 0 0 0 chr11 93371681 93371726 -28472130 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 6 1297 702 297 118 39 chr11 93372799 93373135 -28470721 + L1MD3 LINE L1 7522 7890 -105 6 1297 3015 6 39 0 chr11 93373135 93373468 -28470388 - ORR1A0 LTR MaLR 0 346 1 6 1297 702 297 118 39 chr11 93373468 93373562 -28470294 + L1MD3 LINE L1 7891 7986 -9 6 1297 1178 132 79 0 chr11 93373567 93373756 -28470100 + B3 SINE B2 5 208 -8 6 1297 234 91 0 0 chr11 93374210 93374243 -28469613 + (CAT)n Simple_repeat Simple_repeat 2 34 0 6 1297 189 0 0 0 chr11 93376653 93376674 -28467182 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1297 435 299 62 0 chr11 93378047 93378239 -28465617 + MIR3 SINE MIR 10 207 -1 6 1297 306 288 29 9 chr11 93378248 93378353 -28465503 + MIRc SINE MIR 112 218 -50 6 1297 471 250 229 12 chr11 93378587 93378660 -28465196 + B4 SINE B4 2 75 -217 6 1297 1119 93 0 0 chr11 93378660 93378931 -28464925 + (TG)n Simple_repeat Simple_repeat 1 271 0 6 1297 471 250 229 12 chr11 93378931 93379025 -28464831 + B4 SINE B4 76 207 -85 6 1297 927 242 56 35 chr11 93379149 93379485 -28464371 - MTD LTR MaLR -14 405 1 6 1297 540 315 13 40 chr11 93379829 93380054 -28463802 - Lx8 LINE L1 -245 7228 7010 6 1297 280 323 0 10 chr11 93380111 93380211 -28463645 + RMER15 LTR ERVL 376 474 -101 6 1297 212 337 41 0 chr11 93380761 93380859 -28462997 - L2b LINE L2 -7 3368 3267 6 1297 300 211 0 0 chr11 93381405 93381476 -28462380 + GA-rich Low_complexity Low_complexity 2 72 0 6 1297 509 231 85 0 chr11 93381484 93381614 -28462242 - B1F SINE Alu -7 142 2 6 1297 996 270 25 11 chr11 93381621 93381902 -28461954 - MER21B LTR ERV1 -384 479 195 6 1297 245 329 0 0 chr11 93382136 93382215 -28461641 - MER21B LTR ERV1 -773 90 12 6 1297 186 43 0 0 chr11 93382632 93382655 -28461201 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1297 927 229 19 10 chr11 93385099 93385306 -28458550 + MTD LTR MaLR 3 211 -208 6 1297 1229 162 9 54 chr11 93385309 93385531 -28458325 + B3 SINE B2 5 216 0 6 1297 363 182 271 16 chr11 93385558 93385687 -28458169 + MTD LTR MaLR 196 358 -21 6 1297 369 0 0 0 chr11 93387216 93387257 -28456599 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1297 196 294 165 8 chr11 93388164 93388291 -28455565 + MER5B DNA MER1_type 1 147 -31 6 1297 296 279 128 43 chr11 93388456 93388643 -28455213 + L2a LINE L2 3224 3426 0 6 1297 999 174 101 15 chr11 93389110 93389309 -28454547 + B3 SINE B2 1 216 0 6 1297 318 26 0 0 chr11 93389315 93389354 -28454502 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1297 2071 163 16 21 chr11 93389694 93390070 -28453786 - ORR1D1 LTR MaLR 0 374 1 6 1297 673 288 45 24 chr11 93390450 93390696 -28453160 - Tigger5 DNA MER2_type -20 2386 2136 6 1297 198 0 0 0 chr11 93390800 93390822 -28453034 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 6 1297 350 375 71 4 chr11 93391277 93391531 -28452325 - L2 LINE L2 -582 2837 2567 6 1297 192 77 0 0 chr11 93391741 93391767 -28452089 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 6 1297 411 21 0 0 chr11 93391772 93391820 -28452036 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 6 1297 3891 42 0 0 chr11 93391871 93392328 -28451528 - L1Md_T LINE L1 0 6582 6126 6 1297 322 292 74 107 chr11 93393963 93394366 -28449490 + MLT1B LTR MaLR 1 390 0 6 1297 562 342 138 19 chr11 93394465 93394885 -28448971 - L2a LINE L2 -273 3153 2684 6 1297 263 322 0 11 chr11 93395611 93395705 -28448151 + MIRc SINE MIR 174 266 -2 6 1297 460 286 99 0 chr11 93396176 93396358 -28447498 + L1MA9 LINE L1 5569 5768 -523 6 1297 369 0 0 0 chr11 93396365 93396406 -28447450 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1297 498 118 0 0 chr11 93396406 93396499 -28447357 + (GA)n Simple_repeat Simple_repeat 2 94 0 6 1297 1158 75 0 0 chr11 93396531 93396677 -28447179 + B1_Mm SINE Alu 1 146 -1 6 1297 546 254 79 14 chr11 93396681 93396821 -28447035 + B1_Mur1 SINE Alu 1 149 0 6 1297 763 229 11 11 chr11 93396834 93397011 -28446845 + B3A SINE B2 5 181 -17 6 1297 297 0 0 0 chr11 93397066 93397099 -28446757 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 6 1297 538 244 0 30 chr11 93397108 93397243 -28446613 + L1MA9 LINE L1 5816 5946 -366 6 1297 365 304 0 0 chr11 93397492 93397607 -28446249 + L1MA9 LINE L1 6198 6312 0 6 1297 327 49 0 0 chr11 93398130 93398171 -28445685 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 6 1297 256 333 89 20 chr11 93398172 93398374 -28445482 - L2a LINE L2 0 3426 3211 6 1297 332 97 310 34 chr11 93398886 93399002 -28444854 - B2_Mm2 SINE B2 -1 194 47 6 1297 1219 102 17 0 chr11 93399034 93399210 -28444646 - B2_Mm1t SINE B2 -14 179 1 6 1297 851 204 139 40 chr11 93399318 93399619 -28444237 + L1MA8 LINE L1 4861 5191 -949 7 1297 1775 185 35 58 chr11 93399658 93399743 -28444113 + MTC LTR MaLR 1 79 -342 7 1297 3167 63 2 2 chr11 93399743 93400139 -28443717 - MTA_Mm LTR MaLR 0 396 1 7 1297 1775 185 35 58 chr11 93400139 93400484 -28443372 + MTC LTR MaLR 80 421 0 7 1297 495 245 187 12 chr11 93400488 93400910 -28442946 + L1MA8 LINE L1 5254 5796 -495 7 1297 494 119 12 0 chr11 93400914 93400998 -28442858 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1297 1054 240 80 63 chr11 93401013 93401364 -28442492 + MTD LTR MaLR 63 419 0 7 1297 559 259 35 30 chr11 93401370 93401569 -28442287 + L1MA8 LINE L1 5879 6078 -213 7 1297 2972 33 0 0 chr11 93401635 93401995 -28441861 + L1Md_A LINE L1 228 587 -6137 7 1297 28412 8 0 0 chr11 93401993 93405161 -28438695 + L1Md_A LINE L1 2419 5586 -297 7 1297 9026 12 0 0 chr11 93405161 93406157 -28437699 + L1Md_A LINE L1 5587 6582 0 7 1297 210 37 0 0 chr11 93407570 93407597 -28436259 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 7 1297 682 166 13 82 chr11 93407624 93407782 -28436074 - RMER1C Other Other 0 1342 1196 7 1297 437 303 21 121 chr11 93408150 93408525 -28435331 - MTEa LTR MaLR -2 377 34 7 1297 675 37 0 0 chr11 93408659 93408741 -28435115 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1297 1384 196 204 23 chr11 93408858 93409201 -28434655 - MTD LTR MaLR -14 405 1 7 1297 526 321 58 33 chr11 93409290 93409564 -28434292 + B4 SINE B4 2 282 -10 7 1297 462 36 0 0 chr11 93409572 93409628 -28434228 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1297 327 78 0 0 chr11 93409757 93409808 -28434048 + (CATA)n Simple_repeat Simple_repeat 2 52 0 7 1297 240 111 0 0 chr11 93409850 93409886 -28433970 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1297 438 164 0 43 chr11 93410019 93410134 -28433722 + CT-rich Low_complexity Low_complexity 1 110 0 7 1297 392 247 0 0 chr11 93411092 93411165 -28432691 - B4 SINE B4 0 292 220 7 1297 278 106 21 0 chr11 93411179 93411226 -28432630 + (TCC)n Simple_repeat Simple_repeat 1 48 0 7 1297 723 259 40 45 chr11 93411239 93411461 -28432395 - B4 SINE B4 -67 225 5 7 1297 582 269 53 40 chr11 93412135 93412360 -28431496 - MLT1D LTR MaLR -275 230 3 7 1297 548 298 67 84 chr11 93414581 93414878 -28428978 + B4 SINE B4 1 292 0 7 1297 258 194 0 0 chr11 93414909 93414971 -28428885 + GA-rich Low_complexity Low_complexity 2 63 0 7 1297 478 314 55 46 chr11 93415236 93415453 -28428403 + MER20 DNA MER1_type 1 219 0 7 1297 237 354 96 12 chr11 93415598 93415780 -28428076 - MIRb SINE MIR -56 212 16 7 1297 265 333 33 39 chr11 93416118 93416271 -28427585 - MER20B DNA MER1_type -630 153 2 7 1297 268 291 11 23 chr11 93416674 93416762 -28427094 - MER58B DNA MER1_type -8 333 247 7 1297 286 264 0 14 chr11 93416923 93416996 -28426860 + ID4 SINE ID 6 77 -6 7 1297 238 344 112 0 chr11 93416996 93417048 -28426808 + B4 SINE B4 6 144 -148 7 1297 286 297 119 0 chr11 93417018 93417119 -28426737 + ID_B1 SINE B4 111 223 -1 7 1297 423 119 0 0 chr11 93417356 93417423 -28426433 + (GGA)n Simple_repeat Simple_repeat 3 69 0 7 1297 526 284 84 13 chr11 93417603 93417828 -28426028 - RMER20B LTR ERVK -261 366 126 7 1297 558 54 0 0 chr11 93418024 93418098 -28425758 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 7 1297 911 211 0 4 chr11 93418467 93418719 -28425137 + GA-rich Low_complexity Low_complexity 1 251 0 7 1297 1013 283 57 20 chr11 93418851 93419204 -28424652 - L1MB5 LINE L1 -17 6157 5792 7 1297 1005 213 283 3 chr11 93419256 93419567 -28424289 + MTD LTR MaLR 18 415 -4 7 1297 386 288 80 29 chr11 93419604 93419779 -28424077 - L1MB5 LINE L1 -421 5753 5570 7 1297 288 0 0 0 chr11 93422186 93422218 -28421638 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1297 954 0 0 0 chr11 93422831 93422937 -28420919 + (GAGAA)n Simple_repeat Simple_repeat 5 110 0 7 1297 234 57 0 117 chr11 93423306 93423366 -28420490 + G-rich Low_complexity Low_complexity 5 57 0 7 1297 326 259 11 45 chr11 93424260 93424349 -28419507 + PB1 SINE Alu 37 122 -5 7 1297 236 228 21 52 chr11 93424352 93424449 -28419407 + L1MA5 LINE L1 6192 6285 -15 7 1297 390 283 18 48 chr11 93425849 93426016 -28417840 + MIRb SINE MIR 107 268 0 7 1297 180 176 0 0 chr11 93426016 93426050 -28417806 + (TTG)n Simple_repeat Simple_repeat 1 34 0 7 1297 207 0 0 0 chr11 93426052 93426075 -28417781 + (ATG)n Simple_repeat Simple_repeat 3 25 0 7 1297 191 371 19 0 chr11 93426333 93426438 -28417418 + MIRb SINE MIR 115 221 -47 7 1297 664 101 5 68 chr11 93427638 93427830 -28416026 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1297 428 143 26 9 chr11 93427851 93427964 -28415892 + (CA)n Simple_repeat Simple_repeat 2 116 0 7 1297 615 177 12 6 chr11 93428035 93428200 -28415656 + (CA)n Simple_repeat Simple_repeat 2 167 0 7 1297 919 236 85 5 chr11 93428734 93428934 -28414922 + ID_B1 SINE B4 2 217 -7 7 1297 579 134 31 0 chr11 93429024 93429121 -28414735 + Lx3B LINE L1 6874 6973 0 7 1297 33 25 0 0 chr11 93429132 93429172 -28414684 + AT_rich Low_complexity Low_complexity 1 40 0 7 1297 185 255 20 0 chr11 93429709 93429760 -28414096 + L2a LINE L2 3374 3425 -1 7 1297 315 0 0 0 chr11 93430095 93430130 -28413726 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1297 344 342 8 0 chr11 93430262 93430379 -28413477 + PB1 SINE Alu 1 118 -9 7 1297 25 0 0 0 chr11 93431401 93431426 -28412430 + AT_rich Low_complexity Low_complexity 1 25 0 7 1297 218 289 38 33 chr11 93432129 93432233 -28411623 - MIRb SINE MIR -56 206 99 7 1297 183 310 27 27 chr11 93433447 93433520 -28410336 + L2c LINE L2 3287 3359 -28 7 1297 303 324 0 0 chr11 93435563 93435668 -28408188 + MIR3 SINE MIR 93 197 -11 7 1297 345 250 11 21 chr11 93436313 93436407 -28407449 - MLT2B2 LTR ERVL -3 559 467 7 1297 801 242 117 16 chr11 93436402 93436650 -28407206 - MLT2B2 LTR ERVL -240 275 3 7 1297 262 372 24 10 chr11 93436985 93437191 -28406665 + L2a LINE L2 3029 3237 -189 7 1297 730 254 73 19 chr11 93438080 93438285 -28405571 - ID_B1 SINE B4 -7 217 2 7 1297 21 36 0 0 chr11 93438465 93438493 -28405363 + AT_rich Low_complexity Low_complexity 1 28 0 7 1297 711 35 0 0 chr11 93438712 93438798 -28405058 + (CA)n Simple_repeat Simple_repeat 1 86 0 7 1297 549 0 0 0 chr11 93439240 93439301 -28404555 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1297 351 0 0 0 chr11 93439301 93439339 -28404517 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1297 1851 256 34 16 chr11 93439404 93439849 -28404007 + Lx6 LINE L1 6982 7434 -26 7 1297 553 333 20 0 chr11 93442233 93442383 -28401473 + RSINE1 SINE B4 11 163 -2 7 1297 1057 15 15 0 chr11 93442389 93442520 -28401336 + (CA)n Simple_repeat Simple_repeat 1 133 0 7 1297 210 244 0 0 chr11 93443537 93443582 -28400274 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 7 1297 248 200 0 15 chr11 93445909 93445975 -28397881 + GA-rich Low_complexity Low_complexity 1 65 0 7 1297 294 179 0 0 chr11 93446243 93446299 -28397557 + A-rich Low_complexity Low_complexity 1 56 0 7 1297 2163 166 59 17 chr11 93446803 93447207 -28396649 - MTC LTR MaLR 0 421 1 7 1297 365 317 128 18 chr11 93448429 93448593 -28395263 + B4A SINE B4 109 290 -2 7 1297 966 254 0 19 chr11 93448694 93448907 -28394949 + B3 SINE B2 3 211 -5 7 1297 880 333 88 17 chr11 93448931 93449454 -28394402 - L2 LINE L2 -642 2777 2218 7 1297 205 110 93 27 chr11 93449717 93449792 -28394064 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 7 1297 1139 256 88 17 chr11 93449893 93450247 -28393609 - MTEb LTR MaLR 0 379 1 7 1297 918 211 10 10 chr11 93450674 93450870 -28392986 - B3 SINE B2 -7 209 14 7 1297 737 283 89 97 chr11 93451437 93451797 -28392059 + ORR1E LTR MaLR 1 357 -2 7 1297 396 70 28 0 chr11 93452808 93452879 -28390977 - Lx4A LINE L1 -1 7057 6985 7 1297 1901 180 30 22 chr11 93453451 93453821 -28390035 - ORR1D1 LTR MaLR -1 373 1 7 1298 312 302 71 71 chr11 93454434 93454630 -28389226 - MIRb SINE MIR -21 247 52 7 1298 250 337 55 20 chr11 93455223 93455423 -28388433 + L2b LINE L2 2784 2990 -429 7 1298 245 294 62 27 chr11 93455985 93456097 -28387759 + PB1D10 SINE Alu 2 117 0 7 1298 639 256 11 62 chr11 93456099 93456278 -28387578 + B3A SINE B2 3 172 -26 7 1298 237 182 58 43 chr11 93456315 93456384 -28387472 + GA-rich Low_complexity Low_complexity 3 72 0 7 1298 2567 187 30 44 chr11 93456504 93457074 -28386782 - RLTR20B3 LTR ERVK -14 563 2 7 1298 258 337 10 10 chr11 93457395 93457497 -28386359 + L2b LINE L2 3274 3375 0 7 1298 909 285 101 24 chr11 93458654 93459031 -28384825 - MLT1C LTR MaLR -1 466 61 7 1298 320 307 119 0 chr11 93459228 93459329 -28384527 + PB1D7 SINE Alu 6 118 -2 7 1298 269 270 13 13 chr11 93459376 93459451 -28384405 + ID4_ SINE ID 17 91 -61 7 1298 267 224 19 48 chr11 93459461 93459564 -28384292 + MER103 DNA DNA 55 154 -12 7 1298 359 195 17 17 chr11 93459972 93460092 -28383764 + CT-rich Low_complexity Low_complexity 3 122 0 7 1298 182 357 48 48 chr11 93460999 93461102 -28382754 - L2b LINE L2 -19 3356 3254 7 1298 341 317 89 0 chr11 93461105 93461228 -28382628 - MER58B DNA MER1_type 0 341 208 7 1298 804 154 0 0 chr11 93461835 93461991 -28381865 + (CA)n Simple_repeat Simple_repeat 2 157 0 7 1298 288 0 0 0 chr11 93462350 93462382 -28381474 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1298 21 36 0 0 chr11 93463017 93463045 -28380811 + AT_rich Low_complexity Low_complexity 1 28 0 7 1298 1654 212 78 47 chr11 93463821 93464311 -28379545 - RMER5 LTR ERV1 -4 530 26 7 1298 736 174 0 13 chr11 93466057 93466214 -28377642 + (TA)n Simple_repeat Simple_repeat 1 155 0 7 1298 668 221 39 7 chr11 93466214 93466369 -28377487 + ORR1D1 LTR MaLR 176 335 -39 7 1298 213 43 87 0 chr11 93466391 93466437 -28377419 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 7 1298 721 153 0 8 chr11 93467608 93467727 -28376129 + B3 SINE B2 2 119 -97 7 1298 195 291 14 14 chr11 93467975 93468062 -28375794 - MIR SINE MIR -119 149 63 8 1298 911 294 56 19 chr11 93468193 93468515 -28375341 + MLT1A0 LTR MaLR 2 335 -30 8 1298 518 0 16 0 chr11 93468876 93468938 -28374918 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 8 1298 181 263 119 42 chr11 93469157 93469300 -28374556 + MIRc SINE MIR 98 251 -17 8 1298 625 158 200 0 chr11 93470783 93470903 -28372953 + B1_Mur4 SINE Alu 1 144 -6 8 1298 222 37 0 0 chr11 93470903 93470930 -28372926 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 8 1298 301 212 50 86 chr11 93470958 93471044 -28372812 + L1MB5 LINE L1 5712 5792 -392 8 1298 216 0 0 0 chr11 93471044 93471068 -28372788 + (TATG)n Simple_repeat Simple_repeat 2 25 0 8 1298 301 212 50 86 chr11 93471068 93471120 -28372736 + L1MB5 LINE L1 5793 5845 -339 8 1298 396 0 0 0 chr11 93471318 93471362 -28372494 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1298 516 289 44 40 chr11 93471991 93472218 -28371638 + L1MB7 LINE L1 5808 6035 -149 8 1298 277 164 27 0 chr11 93472364 93472437 -28371419 + (TA)n Simple_repeat Simple_repeat 1 75 0 8 1298 657 289 44 18 chr11 93472451 93472726 -28371130 + B4A SINE B4 4 285 -7 8 1298 279 0 0 0 chr11 93472744 93472775 -28371081 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1298 394 231 161 8 chr11 93472881 93472999 -28370857 + L1MB5 LINE L1 6038 6173 -1 8 1298 555 90 0 0 chr11 93474081 93474159 -28369697 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1298 721 281 122 64 chr11 93474502 93474878 -28368978 - MT2A LTR ERVL -71 462 65 8 1298 402 161 0 24 chr11 93475399 93475482 -28368374 - MT2A LTR ERVL -452 81 1 8 1298 321 26 0 0 chr11 93476165 93476203 -28367653 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1298 253 283 65 82 chr11 93476354 93476585 -28367271 - ORR1E LTR MaLR -72 287 61 8 1298 279 0 0 0 chr11 93476790 93476821 -28367035 + (CATG)n Simple_repeat Simple_repeat 2 32 0 8 1298 203 277 60 12 chr11 93477030 93477114 -28366742 - MIR SINE MIR -162 100 13 8 1298 244 256 38 13 chr11 93477888 93477967 -28365889 - L1MA4 LINE L1 -175 6125 6045 8 1298 1321 223 88 60 chr11 93478643 93478834 -28365022 - MTD LTR MaLR -14 405 205 8 1298 748 48 0 19 chr11 93478834 93478941 -28364915 + (TTTC)n Simple_repeat Simple_repeat 1 105 0 8 1298 1321 222 86 65 chr11 93478941 93478953 -28364903 - MTD LTR MaLR -215 204 204 8 1298 1073 197 48 15 chr11 93478953 93479159 -28364697 - B3 SINE B2 -3 213 1 8 1298 1321 222 86 65 chr11 93479159 93479353 -28364503 - MTD LTR MaLR -215 204 12 8 1298 330 26 0 0 chr11 93480319 93480358 -28363498 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1298 415 197 21 21 chr11 93480361 93480501 -28363355 + (CATATA)n Simple_repeat Simple_repeat 5 144 0 8 1298 1109 119 155 5 chr11 93480948 93481142 -28362714 + URR1A DNA MER1_type 1 223 -3 8 1298 202 132 26 0 chr11 93481362 93481400 -28362456 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 8 1298 1379 241 46 24 chr11 93481566 93481936 -28361920 - MTE2b LTR MaLR -1 378 1 8 1298 27 0 0 0 chr11 93482268 93482295 -28361561 + AT_rich Low_complexity Low_complexity 1 27 0 8 1298 417 229 171 52 chr11 93482493 93482686 -28361170 + B3 SINE B2 1 216 0 8 1298 292 247 0 66 chr11 93483477 93483568 -28360288 + B4 SINE B4 2 86 -206 8 1298 333 342 91 13 chr11 93483580 93483734 -28360122 + B4A SINE B4 125 290 -2 8 1298 277 296 22 36 chr11 93483997 93484134 -28359722 + MER58B DNA MER1_type 207 341 0 8 1298 219 88 0 0 chr11 93485354 93485388 -28358468 + (TTG)n Simple_repeat Simple_repeat 2 35 0 8 1298 738 274 82 51 chr11 93485543 93485902 -28357954 - RLTR12B LTR ERVK -137 391 1 8 1298 360 265 61 0 chr11 93486335 93486433 -28357423 + PB1D10 SINE Alu 6 109 -8 8 1298 259 227 6 43 chr11 93486456 93486617 -28357239 + GA-rich Low_complexity Low_complexity 1 155 0 8 1298 510 284 65 5 chr11 93487268 93487452 -28356404 - MLT1D LTR MaLR 0 505 311 8 1298 232 355 76 19 chr11 93488039 93488197 -28355659 - MIRb SINE MIR -70 198 32 8 1298 310 296 27 36 chr11 93488398 93488510 -28355346 + RSINE1 SINE B4 55 165 0 8 1298 728 283 206 4 chr11 93488567 93488913 -28354943 + Lx9 LINE L1 7094 7508 -136 8 1298 516 16 0 0 chr11 93488913 93488974 -28354882 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1298 728 283 206 4 chr11 93488974 93489078 -28354778 + Lx9 LINE L1 7509 7634 -10 8 1298 453 376 6 0 chr11 93489124 93489281 -28354575 + RSINE1 SINE B4 3 160 -5 8 1298 183 318 82 0 chr11 93490076 93490161 -28353695 + L2 LINE L2 2802 2893 -526 8 1298 405 0 0 0 chr11 93490390 93490435 -28353421 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 8 1298 226 118 39 19 chr11 93490463 93490515 -28353341 + (CATG)n Simple_repeat Simple_repeat 3 55 0 8 1298 218 354 53 0 chr11 93490712 93490825 -28353031 + MIRb SINE MIR 46 164 -104 8 1298 3248 132 8 20 chr11 93490931 93491418 -28352438 + RMER1B Other Other 438 918 -148 8 1298 417 20 0 0 chr11 93491418 93491468 -28352388 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1298 315 0 0 0 chr11 93491492 93491527 -28352329 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 8 1298 243 273 182 0 chr11 93491589 93491688 -28352168 + ORR1E LTR MaLR 4 120 -239 8 1298 555 195 0 0 chr11 93491917 93492030 -28351826 + (TA)n Simple_repeat Simple_repeat 1 113 0 8 1298 188 333 0 0 chr11 93493009 93493060 -28350796 - L2b LINE L2 0 3375 3325 8 1298 254 275 53 86 chr11 93493100 93493251 -28350605 + RMER12 LTR ERVK 711 856 -466 8 1298 1024 241 99 42 chr11 93493300 93493634 -28350222 - ORR1D2 LTR MaLR -17 353 1 8 1298 21 0 0 0 chr11 93493773 93493794 -28350062 + AT_rich Low_complexity Low_complexity 1 21 0 8 1298 443 88 11 32 chr11 93494902 93494996 -28348860 + (TA)n Simple_repeat Simple_repeat 1 92 0 8 1298 1958 163 86 3 chr11 93495015 93495354 -28348502 + ORR1B2 LTR MaLR 1 367 0 8 1298 186 133 0 0 chr11 93495686 93495716 -28348140 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 8 1298 480 272 18 3 chr11 93495968 93496308 -28347548 + (TG)n Simple_repeat Simple_repeat 1 345 0 8 1298 390 289 46 40 chr11 93496308 93496481 -28347375 - B4A SINE B4 0 292 119 8 1298 364 300 0 55 chr11 93496488 93496615 -28347241 - B1_Mus2 SINE Alu -23 124 5 8 1298 3765 36 0 7 chr11 93497276 93497720 -28346136 + L1_Mm LINE L1 5145 5586 -297 8 1298 8126 38 5 19 chr11 93497720 93498718 -28345138 + L1Md_F2 LINE L1 5587 6570 -12 8 1298 543 128 0 0 chr11 93499378 93499464 -28344392 + (TTTG)n Simple_repeat Simple_repeat 3 88 0 8 1298 294 322 84 41 chr11 93499680 93500000 -28343856 + L1MC4 LINE L1 7310 7643 -399 8 1298 208 93 44 44 chr11 93500046 93500091 -28343765 + GA-rich Low_complexity Low_complexity 3 47 0 1 1298 481 271 28 78 chr11 93501229 93501409 -28342447 + B3A SINE B2 2 172 -26 2 1298 258 105 0 0 chr11 93502002 93502040 -28341816 + (CAG)n Simple_repeat Simple_repeat 1 38 0 3 1298 1832 149 110 37 chr11 93503355 93503538 -28340318 - RMER17C LTR ERVK 0 410 224 4 1298 423 0 0 0 chr11 93503538 93503585 -28340271 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1298 279 0 0 0 chr11 93503585 93503615 -28340241 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1298 1832 149 110 37 chr11 93503615 93503812 -28340044 - RMER17C LTR ERVK -187 223 2 4 1298 27 29 0 0 chr11 93504679 93504713 -28339143 + AT_rich Low_complexity Low_complexity 1 34 0 7 1298 594 312 78 0 chr11 93505269 93505517 -28338339 - MER58B DNA MER1_type 0 341 69 8 1298 452 135 60 24 chr11 93505732 93505899 -28337957 + (TCTG)n Simple_repeat Simple_repeat 4 176 0 9 1298 515 46 46 0 chr11 93505944 93506031 -28337825 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1298 405 289 70 0 chr11 93506142 93506298 -28337558 + L1MA4 LINE L1 5759 5925 -375 1 1298 453 138 0 0 chr11 93506316 93506396 -28337460 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1298 38 39 0 0 chr11 93506663 93506715 -28337141 + AT_rich Low_complexity Low_complexity 1 52 0 1 1298 329 282 22 22 chr11 93506897 93507075 -28336781 - MER33 DNA MER1_type -76 248 71 1 1298 362 243 7 0 chr11 93507509 93507649 -28336207 + (CA)n Simple_repeat Simple_repeat 2 142 0 1 1298 262 337 72 21 chr11 93507661 93507758 -28336098 - MIRb SINE MIR -154 114 13 1 1298 1409 240 47 19 chr11 93510513 93510928 -28332928 - RMER15 LTR ERVL 0 575 57 1 1298 2324 137 40 23 chr11 93511410 93511807 -28332049 - MTB_Mm LTR MaLR -3 404 1 1 1298 456 104 0 0 chr11 93513738 93513805 -28330051 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1298 884 169 14 0 chr11 93513813 93513961 -28329895 - B1_Mur4 SINE Alu 0 150 1 2 1298 340 222 0 53 chr11 93514153 93514229 -28329627 - ID4 SINE ID -11 72 1 2 1298 255 200 127 0 chr11 93514186 93514241 -28329615 - ZP3AR Satellite Satellite -127 85 24 2 1298 555 167 114 38 chr11 93514259 93514390 -28329466 - B1_Mur1 SINE Alu -8 141 1 2 1298 251 304 80 31 chr11 93517696 93517859 -28325997 - L2a LINE L2 -179 3247 3077 2 1298 585 178 0 0 chr11 93518055 93518212 -28325644 + (TG)n Simple_repeat Simple_repeat 2 158 0 2 1298 218 375 0 55 chr11 93518233 93518360 -28325496 - L2a LINE L2 -577 2842 2723 2 1298 2482 83 3 3 chr11 93518724 93519050 -28324806 - ORR1A3 LTR MaLR 0 326 1 2 1298 231 396 84 18 chr11 93519505 93519675 -28324181 - MIRb SINE MIR -72 196 22 2 1298 3123 121 26 10 chr11 93521081 93521581 -28322275 - Lx2 LINE L1 -1 6996 6489 2 1298 486 297 159 74 chr11 93521812 93522259 -28321597 + L1MB3 LINE L1 5696 6180 -3 2 1298 272 214 30 60 chr11 93522818 93522952 -28320904 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 3 1298 894 181 11 6 chr11 93522976 93523154 -28320702 + ORR1B1 LTR MaLR 1 179 -215 3 1298 342 0 0 0 chr11 93523517 93523555 -28320301 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 3 1298 895 282 88 15 chr11 93524055 93524318 -28319538 + B4A SINE B4 11 292 0 3 1298 1015 214 0 6 chr11 93525285 93525468 -28318388 + B3 SINE B2 1 182 -34 3 1298 222 156 0 22 chr11 93525499 93525545 -28318311 + (TAA)n Simple_repeat Simple_repeat 1 45 0 3 1298 733 298 35 28 chr11 93525858 93526145 -28317711 + B4A SINE B4 1 289 -3 3 1298 466 224 148 66 chr11 93526756 93526938 -28316918 - B3A SINE B2 0 198 2 3 1298 225 0 0 0 chr11 93526999 93527024 -28316832 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1298 844 221 35 30 chr11 93527317 93527518 -28316338 - B3 SINE B2 -13 203 2 3 1298 654 295 20 62 chr11 93527550 93527854 -28316002 + B4A SINE B4 2 292 0 4 1298 962 238 158 17 chr11 93528042 93528397 -28315459 + L1M4 LINE L1 5377 5781 -397 4 1298 565 320 55 5 chr11 93528500 93528720 -28315136 + MER54A LTR ERVL 192 422 -479 4 1298 510 79 0 0 chr11 93528728 93528804 -28315052 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1298 194 340 47 9 chr11 93528929 93529036 -28314820 + L2 LINE L2 1835 1945 -1474 4 1298 456 104 0 0 chr11 93529436 93529503 -28314353 + (GGA)n Simple_repeat Simple_repeat 3 69 0 4 1298 396 0 0 0 chr11 93529817 93529861 -28313995 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 4 1298 1134 0 0 0 chr11 93530120 93530246 -28313610 + (GGGAGA)n Simple_repeat Simple_repeat 6 131 0 4 1298 274 198 103 8 chr11 93530580 93530697 -28313159 - Lx9 LINE L1 0 7644 7517 4 1298 438 20 0 0 chr11 93530698 93530749 -28313107 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1298 392 241 42 17 chr11 93530752 93530870 -28312986 - Lx9 LINE L1 -172 7472 7352 4 1298 263 225 27 40 chr11 93530870 93530944 -28312912 + MER21B LTR ERV1 207 279 -584 5 1298 3147 68 2 5 chr11 93531001 93531398 -28312458 - MTA_Mm LTR MaLR 0 396 1 5 1298 8408 71 4 4 chr11 93531398 93532496 -28311360 - MTA_Mm-int LTR MaLR 0 1098 1 5 1298 1026 69 0 0 chr11 93532496 93532640 -28311216 - MTA_Mm LTR MaLR 0 407 264 5 1298 1459 49 0 24 chr11 93532604 93532814 -28311042 + MTB LTR MaLR 196 400 0 5 1298 257 276 163 18 chr11 93532875 93533041 -28310815 + MER21B LTR ERV1 403 592 -271 5 1298 479 319 38 42 chr11 93533393 93533658 -28310198 - L1ME4a LINE L1 -296 5828 5565 5 1298 1854 139 96 3 chr11 93533892 93534245 -28309611 - ORR1B1 LTR MaLR -8 386 1 5 1298 699 303 101 24 chr11 93534612 93534940 -28308916 - MLT1B LTR MaLR -35 355 3 5 1298 252 314 35 0 chr11 93535353 93535439 -28308417 + MER54A LTR ERVL 160 248 -653 5 1298 239 332 167 10 chr11 93535458 93535662 -28308194 + MER54A LTR ERVL 314 549 -352 5 1298 207 0 0 0 chr11 93535706 93535729 -28308127 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1298 212 231 0 0 chr11 93536490 93536529 -28307327 + polypurine Low_complexity Low_complexity 3 41 0 5 1298 284 291 251 19 chr11 93536661 93536924 -28306932 + L1MD2 LINE L1 5767 6090 -269 5 1298 239 341 55 39 chr11 93536924 93537052 -28306804 + B4 SINE B4 62 191 -101 6 1298 619 213 0 24 chr11 93536946 93537071 -28306785 + PB1 SINE Alu 6 127 0 6 1298 66 70 0 0 chr11 93537080 93537209 -28306647 + AT_rich Low_complexity Low_complexity 1 129 0 6 1298 210 377 51 19 chr11 93537492 93537649 -28306207 - MIR SINE MIR -6 256 95 6 1298 461 329 107 64 chr11 93537700 93538122 -28305734 + LTR16B2 LTR ERVL 23 462 0 6 1298 2230 117 3 24 chr11 93538166 93538500 -28305356 + ORR1A2 LTR MaLR 1 327 0 6 1298 1192 43 0 0 chr11 93538561 93538699 -28305157 + B1_Mus1 SINE Alu 2 139 -9 6 1298 180 0 0 0 chr11 93538699 93538719 -28305137 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1298 307 274 237 9 chr11 93539752 93539866 -28303990 - B1F1 SINE Alu -9 140 1 6 1298 636 139 0 0 chr11 93540047 93540191 -28303665 + (TC)n Simple_repeat Simple_repeat 1 144 0 6 1298 913 163 0 0 chr11 93540197 93540338 -28303518 - B1_Mus2 SINE Alu -6 141 1 7 1298 809 277 76 73 chr11 93541171 93541570 -28302286 + MTE2a LTR MaLR 6 419 0 7 1298 988 367 31 49 chr11 93541810 93542360 -28301496 + MLT2B3 LTR ERVL 15 554 0 7 1298 455 342 67 73 chr11 93543060 93543401 -28300455 - Lx8 LINE L1 -1 7472 7134 7 1298 268 229 17 27 chr11 93543450 93543533 -28300323 + MTEb LTR MaLR 272 365 -14 7 1298 774 248 30 80 chr11 93543843 93544080 -28299776 + B4 SINE B4 54 278 -14 7 1298 320 226 37 28 chr11 93544092 93544201 -28299655 + (CATA)n Simple_repeat Simple_repeat 4 113 0 7 1298 385 268 55 8 chr11 93544296 93544424 -28299432 + RMER15 LTR ERVL 426 559 -16 7 1298 339 209 15 0 chr11 93545509 93545576 -28298280 + ID4_ SINE ID 2 69 -14 7 1298 28 61 0 0 chr11 93545591 93545640 -28298216 + AT_rich Low_complexity Low_complexity 1 49 0 7 1298 252 0 0 0 chr11 93545861 93545889 -28297967 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1298 876 174 28 34 chr11 93545958 93546136 -28297720 - B2_Mm2 SINE B2 -18 177 1 8 1298 24 0 0 0 chr11 93546484 93546508 -28297348 + AT_rich Low_complexity Low_complexity 1 24 0 8 1298 1581 230 24 11 chr11 93546648 93546854 -28297002 + MTE2a LTR MaLR 1 208 -171 8 1298 531 45 0 0 chr11 93546854 93546920 -28296936 + (TC)n Simple_repeat Simple_repeat 2 67 0 8 1298 1581 230 24 11 chr11 93546920 93547087 -28296769 + MTE2a LTR MaLR 209 378 -1 8 1298 221 263 129 40 chr11 93547354 93547468 -28296388 + MIRm SINE MIR 21 149 -127 8 1298 225 0 0 0 chr11 93547625 93547650 -28296206 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 8 1298 1029 79 0 0 chr11 93548349 93548489 -28295367 + (CA)n Simple_repeat Simple_repeat 1 140 0 8 1298 22 0 0 0 chr11 93548716 93548738 -28295118 + AT_rich Low_complexity Low_complexity 1 22 0 8 1298 413 173 0 13 chr11 93548872 93548948 -28294908 - B1_Mur1 SINE Alu 0 149 75 8 1298 556 244 226 0 chr11 93549311 93549531 -28294325 + B4A SINE B4 13 282 -10 9 1298 248 239 28 14 chr11 93549546 93549618 -28294238 + (CA)n Simple_repeat Simple_repeat 2 74 0 9 1298 1037 118 0 6 chr11 93549850 93550029 -28293827 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 9 1298 1459 289 72 69 chr11 93550459 93550687 -28293169 + L1MC2 LINE L1 5433 5664 -680 9 1298 315 0 0 0 chr11 93550687 93550722 -28293134 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1298 1459 289 72 69 chr11 93550722 93550796 -28293060 + L1MC2 LINE L1 5665 5758 -586 9 1298 1749 169 41 3 chr11 93550796 93551110 -28292746 + ORR1A3 LTR MaLR 1 326 0 9 1298 1459 289 72 69 chr11 93551110 93551357 -28292499 + L1MC2 LINE L1 5759 5978 -366 9 1298 438 20 0 0 chr11 93551357 93551408 -28292448 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1298 1459 289 72 69 chr11 93551408 93551533 -28292323 + L1MC2 LINE L1 5979 6110 -234 9 1298 1913 157 3 23 chr11 93551555 93551901 -28291955 - MTC LTR MaLR -8 413 75 9 1298 221 0 35 0 chr11 93551901 93551930 -28291926 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 9 1298 4466 93 25 3 chr11 93551933 93552561 -28291295 - L1_Mus4 LINE L1 -12 6624 5983 9 1298 2124 53 0 0 chr11 93552561 93552824 -28291032 + L1_Mus4 LINE L1 5699 5961 -675 9 1298 447 135 0 0 chr11 93552825 93552899 -28290957 - MTC LTR MaLR -343 78 5 9 1298 1720 139 17 76 chr11 93552939 93552981 -28290875 - RMER17C LTR ERVK 0 410 371 1 1298 1451 84 0 5 chr11 93552981 93553172 -28290684 + B2_Mm2 SINE B2 1 190 -5 1 1298 1720 142 16 72 chr11 93553172 93553598 -28290258 - RMER17C LTR ERVK -519 439 16 1 1298 2987 36 8 0 chr11 93554011 93554375 -28289481 - L1Md_F2 LINE L1 0 6582 6216 1 1298 597 308 23 37 chr11 93554405 93554621 -28289235 + MER44B DNA MER2_type 1 213 -337 1 1298 232 121 17 33 chr11 93554805 93554865 -28288991 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1298 237 376 34 53 chr11 93555095 93555303 -28288553 - L1MEd LINE L1 -5673 446 243 1 1298 2422 181 86 69 chr11 93555387 93555893 -28287963 - RMER20B LTR ERVK -14 613 90 1 1298 216 0 0 0 chr11 93555893 93555917 -28287939 + (CCA)n Simple_repeat Simple_repeat 1 24 0 1 1298 2422 181 86 69 chr11 93555917 93556004 -28287852 - RMER20B LTR ERVK -538 89 10 1 1298 40 0 0 0 chr11 93556907 93556947 -28286909 + AT_rich Low_complexity Low_complexity 1 40 0 1 1298 300 260 77 19 chr11 93557065 93557195 -28286661 - MIR SINE MIR -59 209 76 1 1298 435 304 52 24 chr11 93558739 93558951 -28284905 + HAL1 LINE L1 2287 2504 -3 1 1298 23 0 0 0 chr11 93558995 93559018 -28284838 + AT_rich Low_complexity Low_complexity 1 23 0 1 1298 582 224 271 32 chr11 93559357 93559578 -28284278 + B4 SINE B4 5 278 -14 1 1298 271 313 107 57 chr11 93559933 93560214 -28283642 + L2a LINE L2 3026 3320 -106 1 1298 780 276 62 14 chr11 93560372 93560648 -28283208 - MLT1A0 LTR MaLR -76 289 1 1 1298 627 105 17 17 chr11 93561374 93561490 -28282366 + (CAGA)n Simple_repeat Simple_repeat 1 116 0 1 1298 769 223 59 48 chr11 93561533 93561806 -28282050 - L1MA7 LINE L1 -3 6288 6013 1 1298 2786 169 46 22 chr11 93562321 93562860 -28280996 - RMER1A Other Other -10 1020 469 1 1298 293 341 58 67 chr11 93562872 93563196 -28280660 + Tigger12 DNA MER2_type 249 562 -1397 1 1298 209 114 29 0 chr11 93563393 93563428 -28280428 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 1 1298 810 108 22 17 chr11 93563428 93563607 -28280249 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1298 414 132 47 0 chr11 93563586 93563692 -28280164 + (TCTCTG)n Simple_repeat Simple_repeat 3 113 0 1 1298 993 106 0 0 chr11 93563692 93563872 -28279984 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1298 1594 52 0 5 chr11 93564439 93564633 -28279223 + B2_Mm2 SINE B2 2 194 -1 1 1298 198 209 0 0 chr11 93564650 93564693 -28279163 + GA-rich Low_complexity Low_complexity 3 45 0 1 1298 26 30 0 0 chr11 93564967 93565000 -28278856 + AT_rich Low_complexity Low_complexity 1 33 0 1 1298 191 365 63 0 chr11 93565250 93565376 -28278480 - L2b LINE L2 -28 3347 3214 1 1298 584 267 59 0 chr11 93565542 93565677 -28278179 + RSINE1 SINE B4 3 145 -20 1 1298 288 0 0 0 chr11 93565688 93565720 -28278136 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1298 667 79 26 9 chr11 93565720 93565835 -28278021 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 1 1298 646 250 82 0 chr11 93565841 93566049 -28277807 + ORR1E LTR MaLR 3 227 -132 1 1298 447 299 139 44 chr11 93566273 93566725 -28277131 + L1MEg LINE L1 821 1349 -4851 1 1298 232 328 38 76 chr11 93566762 93566894 -28276962 + L1MDa LINE L1 416 542 -6091 1 1298 237 312 63 60 chr11 93567019 93567353 -28276503 + L1MDa LINE L1 982 1316 -5317 1 1298 1483 286 63 52 chr11 93567372 93567811 -28276045 - Lx5 LINE L1 -9 7041 6603 1 1298 384 22 0 0 chr11 93567811 93567856 -28276000 + (TCC)n Simple_repeat Simple_repeat 3 47 0 1 1298 1483 286 63 52 chr11 93567856 93567973 -28275883 - Lx5 LINE L1 -448 6602 6480 1 1298 645 298 133 24 chr11 93568001 93568468 -28275388 + L1MDa LINE L1 1305 1822 -4811 1 1298 405 102 0 0 chr11 93568630 93568689 -28275167 + (CACG)n Simple_repeat Simple_repeat 1 59 0 1 1298 390 196 120 30 chr11 93568690 93568790 -28275066 + RLTR42-int LTR ERVK 1222 1330 -4192 1 1298 186 133 0 0 chr11 93569335 93569365 -28274491 + (TCTCC)n Simple_repeat Simple_repeat 1 30 0 1 1298 423 272 92 93 chr11 93569863 93570238 -28273618 + RLTR12B LTR ERVK 19 278 -250 1 1298 467 45 0 15 chr11 93570646 93570713 -28273143 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1298 892 141 14 34 chr11 93571740 93571887 -28271969 + B1_Mus1 SINE Alu 4 147 -1 1 1298 38850 41 0 3 chr11 93572009 93578226 -28265630 - L1Md_T LINE L1 0 6585 295 1 1298 347 312 37 0 chr11 93578274 93578383 -28265473 + MER117 DNA MER1_type 1 113 -84 1 1298 791 298 20 37 chr11 93578393 93578689 -28265167 + B4A SINE B4 1 291 -1 1 1298 1866 170 70 11 chr11 93578693 93578848 -28265008 + ORR1C1 LTR MaLR 1 163 -215 1 1298 600 14 0 0 chr11 93578848 93578917 -28264939 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1298 1866 170 70 11 chr11 93578917 93579118 -28264738 + ORR1C1 LTR MaLR 164 377 -1 1 1298 194 91 0 29 chr11 93579190 93579224 -28264632 + (GAA)n Simple_repeat Simple_repeat 2 34 0 1 1298 217 256 0 0 chr11 93579313 93579356 -28264500 - MIR SINE MIR -129 79 37 1 1298 811 247 80 96 chr11 93579869 93580285 -28263571 + MTE2a LTR MaLR 1 419 0 1 1298 2240 177 94 12 chr11 93580343 93580830 -28263026 - RLTR11A2 LTR ERVK 0 527 1 1 1298 22 0 0 0 chr11 93581334 93581356 -28262500 + AT_rich Low_complexity Low_complexity 1 22 0 1 1298 299 314 27 54 chr11 93581445 93581474 -28262382 - B1F SINE Alu -5 144 117 1 1298 1452 235 67 60 chr11 93581474 93581890 -28261966 - MTD LTR MaLR 0 419 1 1 1298 299 314 27 54 chr11 93581890 93581971 -28261885 - B1F SINE Alu -33 116 37 1 1298 243 229 16 16 chr11 93581996 93582058 -28261798 + (TATG)n Simple_repeat Simple_repeat 1 62 0 1 1298 727 265 82 37 chr11 93582062 93582332 -28261524 - B4A SINE B4 -10 282 1 1 1298 243 114 0 0 chr11 93582360 93582404 -28261452 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1298 556 259 35 21 chr11 93582404 93582546 -28261310 + ID_B1 SINE B4 80 223 -1 1 1298 216 0 0 0 chr11 93583378 93583402 -28260454 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1298 279 294 28 47 chr11 93583405 93583512 -28260344 - L3 LINE CR1 -134 4355 4251 1 1298 2768 96 54 2 chr11 93583726 93584133 -28259723 - L1_Mus4 LINE L1 -6 6630 6203 1 1298 542 147 0 0 chr11 93584133 93584228 -28259628 - MTC LTR MaLR -326 95 1 1 1298 582 256 44 5 chr11 93584231 93584435 -28259421 - LTR37A LTR ERV1 -44 382 171 1 1298 736 316 13 13 chr11 93584611 93584842 -28259014 - MLT1C LTR MaLR -236 231 1 1 1298 244 270 48 48 chr11 93584842 93584939 -28258917 - LTR37A LTR ERV1 -329 97 1 1 162 340 287 111 7 chr11 93585341 93585485 -28258371 - MLT1B LTR MaLR -120 270 112 1 1299 448 283 69 50 chr11 93585627 93585787 -28258069 + RSINE1 SINE B4 3 165 0 1 1299 263 160 20 0 chr11 93585815 93585865 -28257991 - MER5B DNA MER1_type -126 52 2 1 1299 1083 162 73 5 chr11 93585870 93586062 -28257794 + B3 SINE B2 1 205 -11 1 1299 1131 99 27 0 chr11 93586065 93586333 -28257523 + (TAGA)n Simple_repeat Simple_repeat 1 275 0 1 1299 279 259 37 0 chr11 93587413 93587476 -28256380 + ID4 SINE ID 15 80 -72 1 1299 775 83 8 40 chr11 93587606 93587731 -28256125 - URR1B DNA MER1_type -2 223 103 1 1299 1773 214 52 12 chr11 93587943 93588346 -28255510 - MTD LTR MaLR 0 419 1 1 1299 408 331 0 0 chr11 93588805 93588941 -28254915 + Lx8 LINE L1 7039 7174 -299 1 1299 618 14 0 0 chr11 93589291 93589362 -28254494 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1299 464 326 50 85 chr11 93589780 93590156 -28253700 + MLT1A0 LTR MaLR 3 365 0 1 1299 797 255 57 49 chr11 93591111 93591185 -28252671 + B4 SINE B4 3 76 -216 1 1299 2850 47 25 6 chr11 93591185 93591549 -28252307 + L1Md_F3 LINE L1 6213 6583 -1 1 1299 797 255 57 49 chr11 93591549 93591721 -28252135 + B4 SINE B4 77 250 -42 1 1299 1169 62 7 0 chr11 93591722 93591866 -28251990 + B1_Mus1 SINE Alu 3 147 -1 1 1299 225 0 0 0 chr11 93591919 93591944 -28251912 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1299 1025 175 35 10 chr11 93592307 93592509 -28251347 - B3 SINE B2 -7 209 3 1 1299 407 256 8 64 chr11 93592835 93592960 -28250896 + MER2 DNA MER2_type 223 340 -5 1 1299 717 248 33 7 chr11 93593032 93593182 -28250674 + B3A SINE B2 1 154 -44 1 1299 590 284 11 40 chr11 93593818 93593994 -28249862 - B3A SINE B2 -10 188 18 1 1299 360 148 0 0 chr11 93594594 93594655 -28249201 + (T)n Simple_repeat Simple_repeat 1 61 0 1 1299 806 252 8 108 chr11 93594655 93594904 -28248952 - ID_B1 SINE B4 0 224 1 1 1299 1903 178 93 38 chr11 93596959 93597356 -28246500 + MTC LTR MaLR 1 419 -2 1 1299 3134 59 26 0 chr11 93597543 93597933 -28245923 - MTB LTR MaLR 0 400 1 1 1299 339 301 35 14 chr11 93598216 93598361 -28245495 + MIR SINE MIR 91 238 -24 1 1299 251 289 22 11 chr11 93598552 93598643 -28245213 - MIRc SINE MIR -104 164 73 1 1299 37831 27 9 8 chr11 93599385 93604560 -28239296 + L1Md_T LINE L1 406 5586 -297 1 1299 8692 26 3 0 chr11 93604560 93605553 -28238303 + L1Md_T LINE L1 5587 6582 0 1 1299 1157 162 28 32 chr11 93605790 93606039 -28237817 - ORR1C2 LTR MaLR 0 384 137 1 1299 833 212 6 22 chr11 93606060 93606243 -28237613 - ORR1D1 LTR MaLR 0 374 195 1 1299 351 237 79 40 chr11 93606384 93606485 -28237371 - PB1D10 SINE Alu -1 116 12 1 1299 275 82 61 0 chr11 93606620 93606669 -28237187 + (ATTAG)n Simple_repeat Simple_repeat 4 55 0 1 1299 242 167 100 0 chr11 93606776 93606836 -28237020 + Lx7 LINE L1 7631 7696 0 1 1299 567 293 7 0 chr11 93607401 93607541 -28236315 + ID_B1 SINE B4 84 224 0 1 1299 2379 188 39 101 chr11 93607691 93608383 -28235473 - RMER13B LTR ERVK 0 860 104 1 1299 3394 228 22 55 chr11 93608423 93609315 -28234541 - RCHARR1 DNA MER1_type -109 865 3 1 1299 636 268 46 6 chr11 93610087 93610260 -28233596 + B3A SINE B2 1 180 -18 1 1299 956 270 80 58 chr11 93610336 93610701 -28233155 - MTEb LTR MaLR -6 373 1 1 1299 207 186 0 0 chr11 93610752 93610795 -28233061 + GA-rich Low_complexity Low_complexity 2 44 0 1 1299 1026 211 14 9 chr11 93610907 93611118 -28232738 + B3 SINE B2 4 215 -1 2 1299 406 306 61 24 chr11 93611153 93611317 -28232539 + MLT1F2 LTR MaLR 1 170 -390 2 1299 561 308 82 29 chr11 93611452 93611733 -28232123 + MLT1F2 LTR MaLR 58 353 -37 2 1299 628 239 40 50 chr11 93611768 93611966 -28231890 + MLT1F2 LTR MaLR 336 531 -29 2 1299 427 271 32 32 chr11 93612505 93612636 -28231220 - MIR SINE MIR -47 161 30 2 1299 205 324 51 85 chr11 93613138 93613256 -28230600 + L2c LINE L2 3273 3386 -1 2 1299 590 281 132 25 chr11 93613541 93613822 -28230034 - MLT1D LTR MaLR -27 478 168 2 1299 253 329 47 0 chr11 93613858 93613943 -28229913 - MLT1D LTR MaLR -522 105 17 2 1299 676 315 50 21 chr11 93614210 93614492 -28229364 - B4A SINE B4 -1 291 2 2 1299 665 278 95 63 chr11 93614519 93614803 -28229053 - ORR1E LTR MaLR -66 293 1 2 1299 803 242 46 13 chr11 93614803 93615041 -28228815 - ORR1E-int LTR MaLR -53 1527 1123 2 1299 576 238 95 24 chr11 93615048 93615216 -28228640 + B2_Mm2 SINE B2 6 185 -10 2 1299 2990 251 163 29 chr11 93615208 93615937 -28227919 - MTEa-int LTR MaLR -275 1305 440 2 1299 882 0 0 0 chr11 93615937 93616035 -28227821 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 1299 2990 265 142 36 chr11 93616035 93616443 -28227413 - MTEa-int LTR MaLR -1141 439 2 2 1299 550 273 17 34 chr11 93616447 93616622 -28227234 - MTEa LTR MaLR -2 377 204 2 1299 1118 117 6 0 chr11 93617208 93617387 -28226469 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1299 222 37 0 0 chr11 93617390 93617417 -28226439 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1299 357 353 51 50 chr11 93617523 93617729 -28226127 + B4A SINE B4 2 220 -72 2 1299 387 0 0 0 chr11 93617831 93617874 -28225982 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1299 624 130 57 8 chr11 93617978 93618102 -28225754 + BC1_Mm scRNA scRNA 2 131 -21 2 1299 920 276 113 62 chr11 93618583 93619050 -28224806 - Charlie1b DNA MER1_type -32 491 1 2 1299 576 222 15 7 chr11 93619625 93619761 -28224095 - B1F SINE Alu -3 146 10 2 1299 352 325 56 25 chr11 93619647 93619808 -28224048 - ID_B1 SINE B4 -22 202 37 2 1299 1504 231 177 36 chr11 93619932 93620453 -28223403 + RMER19B LTR ERVK 309 902 0 2 1299 190 296 39 102 chr11 93620615 93620743 -28223113 - L2c LINE L2 -8 3379 3260 2 1299 216 0 0 0 chr11 93620831 93620855 -28223001 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1299 292 316 120 10 chr11 93621117 93621309 -28222547 + LTR33 LTR ERVL 275 487 -28 2 1299 1115 89 0 18 chr11 93621776 93621947 -28221909 + B2_Mm2 SINE B2 1 168 -27 2 1299 225 0 0 0 chr11 93621996 93622021 -28221835 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1299 237 65 0 0 chr11 93622173 93622204 -28221652 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1299 942 325 28 31 chr11 93622727 93623117 -28220739 + Lx8 LINE L1 7083 7471 -2 2 1299 221 0 35 0 chr11 93623593 93623622 -28220234 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1299 455 311 8 0 chr11 93623724 93623843 -28220013 + PB1 SINE Alu 1 120 -7 2 1299 355 306 9 9 chr11 93623887 93623999 -28219857 + ID_B1 SINE B4 92 203 -21 2 1299 308 77 19 0 chr11 93625076 93625128 -28218728 + (CGGGGG)n Simple_repeat Simple_repeat 4 56 0 2 1299 271 289 39 13 chr11 93625242 93625319 -28218537 + PB1D10 SINE Alu 21 99 -21 2 1299 306 132 0 0 chr11 93625319 93625372 -28218484 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1299 507 60 0 0 chr11 93625949 93626016 -28217840 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1299 708 256 47 23 chr11 93626111 93626283 -28217573 + ID_B1 SINE B4 37 212 -12 2 1299 22 0 0 0 chr11 93626291 93626313 -28217543 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 193 347 21 10 chr11 93626702 93626798 -28217058 - MER5A DNA MER1_type -6 183 87 2 1299 475 299 0 34 chr11 93628185 93628334 -28215522 - ORR1E LTR MaLR -215 144 1 2 1299 276 277 9 38 chr11 93628549 93628654 -28215202 + MLT1A1 LTR MaLR 307 408 0 2 1299 657 284 73 82 chr11 93628729 93628881 -28214975 - MLT1D LTR MaLR -166 339 172 2 1299 2025 121 48 57 chr11 93628881 93629213 -28214643 + ORR1A4 LTR MaLR 1 329 0 2 1299 657 284 73 82 chr11 93629213 93629401 -28214455 - MLT1D LTR MaLR -334 171 2 2 1299 203 302 219 0 chr11 93630550 93630669 -28213187 + MIRb SINE MIR 96 240 -28 2 1299 254 303 96 29 chr11 93630861 93630997 -28212859 + MLT1J2 LTR MaLR 4 148 -300 2 1299 2184 222 56 27 chr11 93631379 93631864 -28211992 + Lx6 LINE L1 6933 7431 -29 2 1299 293 356 0 0 chr11 93631904 93632008 -28211848 - L2 LINE L2 -527 2892 2789 2 1299 199 276 20 0 chr11 93632240 93632338 -28211518 + (TGGG)n Simple_repeat Simple_repeat 2 101 0 2 1299 591 297 103 10 chr11 93632944 93633148 -28210708 - MER58A DNA MER1_type 0 224 2 2 1299 244 369 39 26 chr11 93633346 93633499 -28210357 - MIRc SINE MIR -112 156 2 2 1299 306 0 0 0 chr11 93634317 93634351 -28209505 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1299 250 321 95 30 chr11 93635324 93635549 -28208307 + MIRb SINE MIR 21 259 -3 2 1299 240 228 0 0 chr11 93635549 93635606 -28208250 + (CAT)n Simple_repeat Simple_repeat 3 59 0 2 1299 302 274 50 66 chr11 93637154 93637275 -28206581 - MIR SINE MIR -113 149 31 2 1299 2218 194 15 94 chr11 93637475 93638017 -28205839 - RLTR18B LTR ERVK -5 507 9 2 1299 1271 288 40 0 chr11 93639299 93639650 -28204206 - MTE2b LTR MaLR -14 365 1 2 1299 361 366 0 0 chr11 93639661 93639773 -28204083 + PB1D10 SINE Alu 4 115 -2 2 1299 312 300 0 0 chr11 93639786 93639856 -28204000 + ID4 SINE ID 5 74 -9 2 1299 249 324 18 37 chr11 93640746 93640855 -28203001 + MIRb SINE MIR 22 128 -140 2 1299 367 321 122 69 chr11 93640992 93641296 -28202560 - MLT1D LTR MaLR -145 360 41 2 1299 837 209 160 30 chr11 93641302 93641539 -28202317 - MTEa LTR MaLR -2 377 110 2 1299 654 95 0 0 chr11 93641648 93641743 -28202113 + (CA)n Simple_repeat Simple_repeat 1 95 0 2 1299 322 194 16 0 chr11 93641744 93641806 -28202050 - MTEa LTR MaLR -316 63 1 2 1299 1196 213 55 49 chr11 93642958 93643304 -28200552 - RLTR14 LTR ERV1 -34 348 1 2 1299 321 26 0 0 chr11 93644765 93644803 -28199053 + (TTG)n Simple_repeat Simple_repeat 1 38 0 2 1299 844 255 48 29 chr11 93644814 93645024 -28198832 - ID_B1 SINE B4 -10 214 1 2 1299 591 107 0 46 chr11 93645506 93645614 -28198242 + MTC LTR MaLR 8 110 -311 2 1299 918 151 52 0 chr11 93645618 93645790 -28198066 + URR1A DNA MER1_type 46 226 0 2 1299 1696 191 9 31 chr11 93645790 93646115 -28197741 + MTC LTR MaLR 104 421 0 2 1299 2398 211 53 41 chr11 93646879 93647462 -28196394 + RMER1B Other Other 73 740 -326 2 1299 433 266 132 5 chr11 93647615 93647804 -28196052 + RMER20B LTR ERVK 180 392 -235 2 1299 1304 168 109 85 chr11 93647930 93648261 -28195595 + RMER1B Other Other 728 1066 0 2 1299 1235 34 0 0 chr11 93648265 93648412 -28195444 + B1_Mm SINE Alu 1 147 0 2 1299 219 69 0 0 chr11 93648412 93648441 -28195415 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1299 712 335 102 52 chr11 93648988 93649405 -28194451 + MLT2F LTR ERVL 21 468 -195 2 1299 270 0 0 0 chr11 93649405 93649435 -28194421 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1299 712 335 102 52 chr11 93649435 93649498 -28194358 + MLT2F LTR ERVL 469 524 -139 2 1299 527 347 95 62 chr11 93649623 93649998 -28193858 + MER74B LTR ERVL 67 446 -176 2 1299 480 48 0 0 chr11 93649998 93650061 -28193795 + (CCTG)n Simple_repeat Simple_repeat 2 64 0 2 1299 527 347 95 62 chr11 93650061 93650139 -28193717 + MER74B LTR ERVL 447 534 -88 2 1299 831 307 76 3 chr11 93650590 93650920 -28192936 + MLT1B LTR MaLR 3 356 -34 2 1299 642 324 28 14 chr11 93651027 93651312 -28192544 - B4A SINE B4 -2 290 2 2 1299 200 111 28 0 chr11 93652091 93652127 -28191729 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1299 525 278 0 8 chr11 93652231 93652358 -28191498 + RSINE1 SINE B4 11 136 -29 2 1299 516 32 0 0 chr11 93652362 93652424 -28191432 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1299 471 212 0 0 chr11 93652844 93652924 -28190932 + ID4 SINE ID 1 80 -3 2 1299 253 235 329 0 chr11 93653247 93653332 -28190524 + B4 SINE B4 46 158 -134 2 1299 276 169 0 0 chr11 93653353 93653430 -28190426 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1299 282 56 0 0 chr11 93653431 93653467 -28190389 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1299 452 77 44 0 chr11 93653467 93653558 -28190298 + (CA)n Simple_repeat Simple_repeat 1 95 0 2 1299 456 287 22 87 chr11 93653560 93653789 -28190067 + HAL1 LINE L1 1504 1717 -790 2 1299 401 67 33 0 chr11 93654093 93654153 -28189703 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2 1299 302 305 150 46 chr11 93654188 93654494 -28189362 + HAL1 LINE L1 2132 2469 -38 2 1299 690 219 0 0 chr11 93654847 93654975 -28188881 + RSINE1 SINE B4 3 130 -35 2 1299 423 0 0 0 chr11 93654981 93655028 -28188828 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1299 822 166 14 7 chr11 93655046 93655192 -28188664 + B1_Mus2 SINE Alu 1 147 0 2 1299 3115 72 10 12 chr11 93656050 93656457 -28187399 + MTB_Mm LTR MaLR 1 406 -1 2 1299 1072 217 7 52 chr11 93656631 93656903 -28186953 + L1Md_F LINE L1 39 298 -6221 2 1299 17266 17 0 0 chr11 93656904 93658860 -28184996 + L1Md_A LINE L1 3631 5586 -297 2 1299 8621 30 0 0 chr11 93658860 93659847 -28184009 + L1Md_A LINE L1 5587 6573 -9 2 1299 14841 68 4 36 chr11 93659847 93662527 -28181329 - L1Md_F LINE L1 -2809 3074 487 2 1299 997 119 0 27 chr11 93662690 93662837 -28181019 + B1_Mus1 SINE Alu 1 143 -5 2 1299 533 217 8 32 chr11 93664130 93664254 -28179602 + B3 SINE B2 1 121 -95 2 1299 303 326 42 7 chr11 93664573 93664715 -28179141 - MIRc SINE MIR -118 150 4 2 1299 369 0 0 0 chr11 93665886 93665927 -28177929 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1299 446 315 62 12 chr11 93665999 93666240 -28177616 + L1MB5 LINE L1 5922 6174 0 2 1299 3750 14 37 0 chr11 93666524 93666952 -28176904 + L1Md_T LINE L1 6139 6582 0 2 1299 22 0 0 0 chr11 93666952 93666974 -28176882 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 184 213 16 16 chr11 93667151 93667213 -28176643 + GA-rich Low_complexity Low_complexity 6 67 0 2 1299 485 255 9 9 chr11 93668001 93668108 -28175748 - MIRb SINE MIR -93 175 69 3 1299 240 200 0 0 chr11 93668258 93668328 -28175528 + GA-rich Low_complexity Low_complexity 1 70 0 3 1299 981 293 30 0 chr11 93668333 93668603 -28175253 - B4A SINE B4 -14 278 1 3 1299 1263 202 48 138 chr11 93668743 93669157 -28174699 + MTE2a LTR MaLR 3 379 0 3 1299 650 185 91 15 chr11 93670304 93670436 -28173420 + B1F SINE Alu 1 142 -7 3 1299 599 39 0 13 chr11 93671295 93671374 -28172482 + (TGG)n Simple_repeat Simple_repeat 3 80 0 3 1299 677 191 45 22 chr11 93671403 93671537 -28172319 - B1_Mur2 SINE Alu -8 141 5 3 1299 219 167 0 0 chr11 93672043 93672085 -28171771 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1299 261 0 0 0 chr11 93672085 93672114 -28171742 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 3 1299 212 373 102 16 chr11 93672153 93672281 -28171575 - L2b LINE L2 0 3375 3237 3 1299 232 304 96 51 chr11 93672887 93673064 -28170792 - L1M5 LINE L1 -296 5828 5644 3 1299 554 236 16 8 chr11 93673092 93673216 -28170640 + MLT1J2 LTR MaLR 5 129 -319 3 1299 757 53 0 0 chr11 93673661 93673756 -28170100 - B1_Mus1 SINE Alu -17 131 37 3 1299 306 339 38 45 chr11 93675361 93675494 -28168362 - MIRb SINE MIR -103 165 34 3 1299 1298 261 104 8 chr11 93675932 93676287 -28167569 + MER57D LTR ERV1 21 409 -2 3 1299 360 0 0 0 chr11 93676467 93676507 -28167349 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 3 1299 262 281 16 0 chr11 93676522 93676586 -28167270 + B4A SINE B4 81 145 -147 3 1299 591 283 0 14 chr11 93676537 93676677 -28167179 + B1F SINE Alu 12 149 0 3 1299 406 287 155 58 chr11 93676687 93676861 -28166995 + B3A SINE B2 2 192 -6 3 1299 879 218 84 92 chr11 93676882 93677155 -28166701 + B4A SINE B4 4 274 -18 3 1299 495 0 0 0 chr11 93677182 93677237 -28166619 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1299 246 204 0 0 chr11 93677250 93677294 -28166562 + B1F2 SINE Alu 16 59 -90 3 1299 4501 120 17 9 chr11 93677320 93677984 -28165872 + Lx4A LINE L1 6388 7056 -2 3 1299 24 0 0 0 chr11 93677990 93678014 -28165842 + AT_rich Low_complexity Low_complexity 1 24 0 3 1299 227 326 168 15 chr11 93679299 93679430 -28164426 + MIRb SINE MIR 89 239 -29 3 1299 421 261 0 11 chr11 93680166 93680259 -28163597 + B4 SINE B4 1 92 -200 3 1299 1985 186 10 112 chr11 93680259 93680764 -28163092 + RMER1B Other Other 224 873 -193 3 1299 4515 216 61 8 chr11 93680759 93681758 -28162098 + Lx2B LINE L1 5949 7000 0 3 1299 849 190 85 25 chr11 93681755 93681955 -28161901 + RMER1B Other Other 852 1063 -3 3 1299 597 14 0 0 chr11 93682009 93682079 -28161777 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1299 1170 55 0 0 chr11 93682584 93682747 -28161109 + (TG)n Simple_repeat Simple_repeat 2 164 0 3 1299 387 0 0 0 chr11 93682747 93682789 -28161067 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1299 297 0 0 0 chr11 93682789 93682821 -28161035 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1299 394 285 133 116 chr11 93682899 93683252 -28160604 - ORR1E LTR MaLR 0 359 1 3 1299 296 237 44 142 chr11 93683697 93683810 -28160046 + L2b LINE L2 3283 3384 -3 3 1299 190 299 26 113 chr11 93684352 93684503 -28159353 - L2b LINE L2 -215 3160 3023 3 1299 267 333 11 0 chr11 93684620 93684707 -28159149 + GA-rich Low_complexity Low_complexity 4 91 0 3 1299 264 280 26 13 chr11 93684793 93684869 -28158987 - MER103 DNA DNA -33 133 57 3 1299 567 329 0 102 chr11 93685711 93685955 -28157901 - MER20 DNA MER1_type 0 219 1 3 1299 311 310 10 39 chr11 93686593 93686697 -28157159 + MIRc SINE MIR 166 266 -2 3 1299 775 257 29 0 chr11 93686891 93687066 -28156790 + B3A SINE B2 1 180 -18 3 1299 384 103 0 0 chr11 93687067 93687125 -28156731 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1299 300 53 0 0 chr11 93687125 93687163 -28156693 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 3 1299 198 336 189 0 chr11 93687628 93687750 -28156106 - MIR SINE MIR 0 262 118 3 1299 245 250 132 0 chr11 93687794 93687862 -28155994 + MLT1F2 LTR MaLR 61 137 -432 3 1299 286 307 102 74 chr11 93687917 93688093 -28155763 + B4A SINE B4 9 189 -103 3 1299 288 356 84 28 chr11 93688200 93688414 -28155442 + MLT1F2 LTR MaLR 257 482 -78 3 1299 2242 104 3 68 chr11 93688444 93688796 -28155060 - ORR1A4 LTR MaLR 0 329 1 3 1299 574 268 35 7 chr11 93689069 93689206 -28154650 + RSINE1 SINE B4 11 152 -13 3 1299 441 0 0 0 chr11 93689206 93689255 -28154601 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1299 26 30 0 0 chr11 93689275 93689308 -28154548 + AT_rich Low_complexity Low_complexity 1 33 0 3 1299 291 227 13 0 chr11 93689529 93689604 -28154252 + ID4 SINE ID 5 80 -3 3 1299 257 308 56 40 chr11 93691027 93691173 -28152683 - MIRc SINE MIR -51 217 62 3 1299 239 211 13 90 chr11 93691414 93691492 -28152364 - MIRb SINE MIR -179 89 18 3 1299 238 111 0 0 chr11 93692136 93692172 -28151684 - B1_Mur1 SINE Alu -21 128 93 3 1299 1749 158 66 0 chr11 93692181 93692498 -28151358 + RMER6A LTR ERVK 2 339 -417 3 1299 4445 32 23 0 chr11 93692498 93693023 -28150833 - L1Md_F2 LINE L1 -443 6139 5603 3 1299 3051 54 3 15 chr11 93693023 93693415 -28150441 + L1Md_F2 LINE L1 6196 6582 0 3 1299 1625 141 44 27 chr11 93693416 93693777 -28150079 + RMER6A LTR ERVK 336 756 0 3 1299 212 200 180 0 chr11 93693777 93693827 -28150029 - B1_Mur4 SINE Alu -59 91 33 3 1299 261 128 0 0 chr11 93693834 93693881 -28149975 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 3 1299 489 58 0 0 chr11 93693887 93693956 -28149900 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1299 826 313 26 37 chr11 93694060 93694329 -28149527 - B4A SINE B4 -8 284 19 3 1299 1572 215 53 45 chr11 93694329 93694685 -28149171 - MTD LTR MaLR -43 376 18 3 1299 250 324 0 123 chr11 93694890 93695045 -28148811 - L2b LINE L2 -2 3373 3238 3 1299 382 294 25 82 chr11 93696184 93696343 -28147513 + RSINE1 SINE B4 3 152 -13 3 1299 214 29 0 54 chr11 93696387 93696424 -28147432 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1299 4478 110 106 5 chr11 93696808 93697477 -28146379 + RMER19A LTR ERVK 1 737 0 3 1299 249 132 0 0 chr11 93697495 93697533 -28146323 - ID_B1 SINE B4 -5 219 182 3 1299 1475 276 196 49 chr11 93697535 93698265 -28145591 - Lx8 LINE L1 0 7473 6637 3 1299 217 280 0 0 chr11 93698283 93698333 -28145523 - PB1D10 SINE Alu -37 80 31 3 1299 23 0 0 0 chr11 93698354 93698377 -28145479 + AT_rich Low_complexity Low_complexity 1 23 0 3 1299 379 157 0 0 chr11 93698377 93698447 -28145409 - Lx3B LINE L1 -1 6972 6903 3 1299 6114 71 47 31 chr11 93698447 93699339 -28144517 + L1_Mur1 LINE L1 4684 5589 -297 3 1299 909 228 38 14 chr11 93699402 93699611 -28144245 + ID_B1 SINE B4 4 217 -7 3 1299 1004 198 34 10 chr11 93699621 93699830 -28144026 + B3 SINE B2 1 214 -2 3 1299 302 312 41 10 chr11 93700034 93700131 -28143725 - L2a LINE L2 0 3426 3327 3 1299 425 311 15 11 chr11 93700143 93700258 -28143598 + ID_B1 SINE B4 35 153 -139 3 1299 192 40 0 0 chr11 93700456 93700481 -28143375 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1299 368 351 87 53 chr11 93701028 93701186 -28142670 - Cheshire DNA MER1_type -2146 274 109 3 1299 1250 128 37 0 chr11 93701186 93701373 -28142483 - B2_Mm2 SINE B2 0 195 2 3 1299 368 351 87 53 chr11 93701373 93701479 -28142377 - Cheshire DNA MER1_type -2312 108 1 3 1299 342 167 69 0 chr11 93702763 93702835 -28141021 - ID4 SINE ID -2 81 5 3 1299 232 254 18 35 chr11 93703131 93703188 -28140668 + MLT1C LTR MaLR 3 58 -409 3 1299 6579 203 41 23 chr11 93703190 93704543 -28139313 - Lx6 LINE L1 -261 7199 5822 3 1299 270 0 0 0 chr11 93704630 93704660 -28139196 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1299 243 0 0 0 chr11 93704660 93704686 -28139170 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1299 722 179 26 46 chr11 93704719 93704871 -28138985 - B1_Mur4 SINE Alu 0 150 2 3 1299 316 181 57 186 chr11 93704871 93704898 -28138958 - B4 SINE B4 -219 73 70 3 1299 331 278 271 0 chr11 93704908 93705087 -28138769 + LTR16A LTR ERVL 213 440 -11 3 1299 187 239 21 21 chr11 93705139 93705186 -28138670 + MIRc SINE MIR 56 102 -166 3 1299 285 51 0 0 chr11 93705186 93705225 -28138631 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1299 287 273 157 43 chr11 93705234 93705349 -28138507 + MIRb SINE MIR 125 252 -16 3 1299 311 262 25 0 chr11 93706376 93706456 -28137400 + ID4_ SINE ID 2 83 0 3 1299 1467 64 11 0 chr11 93706522 93706710 -28137146 + B2_Mm1t SINE B2 2 191 -2 3 1299 338 281 82 45 chr11 93706717 93706851 -28137005 + HAL1-3A_ME LINE L1 2295 2433 -425 3 1299 207 0 0 0 chr11 93706935 93706958 -28136898 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 1299 632 231 8 0 chr11 93707058 93707188 -28136668 + ID_B1 SINE B4 94 224 0 3 1299 297 109 0 0 chr11 93707189 93707244 -28136612 + (A)n Simple_repeat Simple_repeat 1 55 0 3 1299 517 219 10 30 chr11 93707391 93707490 -28136366 - B1F SINE Alu -43 106 10 3 1299 377 288 18 26 chr11 93707406 93707520 -28136336 - ID_B1 SINE B4 -53 171 59 3 1299 261 250 0 0 chr11 93708050 93708106 -28135750 + ID4_ SINE ID 28 83 0 3 1299 240 35 0 0 chr11 93708877 93708906 -28134950 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1299 425 288 90 45 chr11 93708906 93709084 -28134772 + MIRc SINE MIR 22 207 -61 3 1299 238 267 119 0 chr11 93709139 93709267 -28134589 - MIRc SINE MIR -97 171 15 3 1299 1601 235 100 0 chr11 93709436 93709836 -28134020 - MT2A LTR ERVL -3 530 91 4 1299 3676 164 211 48 chr11 93709907 93710671 -28133185 + RMER1B Other Other 45 949 -117 4 1299 189 0 0 0 chr11 93710671 93710692 -28133164 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1299 3676 164 211 48 chr11 93710692 93710802 -28133054 + RMER1B Other Other 950 1062 -4 4 1299 3523 28 2 0 chr11 93711031 93711426 -28132430 - MTA_Mm LTR MaLR 0 396 1 4 1299 435 195 0 0 chr11 93711730 93711807 -28132049 - MT2A LTR ERVL -456 77 1 4 1299 232 317 12 0 chr11 93712540 93712622 -28131234 + LTR37B LTR ERV1 7 89 -379 4 1299 393 282 37 129 chr11 93713015 93713178 -28130678 - B1_Mur3 SINE Alu -1 148 1 4 1299 529 289 41 0 chr11 93713065 93713274 -28130582 - ID_B1 SINE B4 -3 221 20 4 1299 189 256 26 0 chr11 93713539 93713578 -28130278 + MIR SINE MIR 213 252 -10 4 1299 1200 116 3 0 chr11 93713581 93713878 -28129978 + (TGGA)n Simple_repeat Simple_repeat 1 298 0 4 1299 548 217 125 6 chr11 93714632 93714808 -28129048 - B3A SINE B2 0 198 2 4 1299 234 301 121 20 chr11 93715267 93715416 -28128440 - MIRb SINE MIR -9 259 96 4 1299 1996 148 10 3 chr11 93715497 93715803 -28128053 - RLTR10E LTR ERVK -3 308 1 4 1299 473 204 43 0 chr11 93715803 93715896 -28127960 - B1F SINE Alu -52 97 1 4 1299 180 0 0 0 chr11 93716079 93716099 -28127757 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 4 1299 1151 68 0 20 chr11 93716099 93716250 -28127606 - B1_Mus1 SINE Alu 0 148 1 4 1300 247 329 0 14 chr11 93717996 93718067 -28125789 + ID4_ SINE ID 1 70 -13 4 1300 1341 260 127 13 chr11 93718161 93718624 -28125232 + RCHARR1 DNA MER1_type 26 541 -433 4 1300 857 205 152 69 chr11 93718624 93718665 -28125191 - L1_Mur3 LINE L1 -492 5388 5351 4 1300 2099 57 4 4 chr11 93718665 93718929 -28124927 - L1_Mus1 LINE L1 0 6567 6304 4 1300 857 205 152 69 chr11 93718929 93719222 -28124634 - L1_Mur3 LINE L1 -530 5350 5026 4 1300 242 163 0 58 chr11 93719222 93719274 -28124582 - L1_Mur3 LINE L1 -799 5081 5033 4 1300 578 146 138 0 chr11 93719293 93719423 -28124433 - URR1A DNA MER1_type 0 226 79 4 1300 420 188 128 0 chr11 93719473 93719590 -28124266 - L1_Mur3 LINE L1 -907 4973 4842 4 1300 416 323 75 10 chr11 93719609 93719809 -28124047 + Lx8 LINE L1 6761 6973 -500 4 1300 1409 146 254 3 chr11 93719870 93720173 -28123683 + RMER16 LTR ERVK 155 533 0 4 1300 584 307 96 22 chr11 93720197 93720467 -28123389 + Lx8 LINE L1 7040 7329 -144 4 1300 1136 188 54 54 chr11 93720563 93720878 -28122978 + RCHARR1 DNA MER1_type 513 827 -147 4 1300 298 144 44 107 chr11 93720964 93721068 -28122788 + B1_Mur2 SINE Alu 24 120 0 4 1300 279 0 0 0 chr11 93723495 93723526 -28120330 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1300 311 265 0 0 chr11 93723756 93723824 -28120032 - B4 SINE B4 -215 77 10 4 1300 617 204 106 0 chr11 93724274 93724406 -28119450 + B1_Mur1 SINE Alu 1 146 -3 4 1300 3863 58 11 11 chr11 93724485 93724955 -28118901 + L1_Mus1 LINE L1 6098 6567 0 4 1300 1023 228 31 5 chr11 93724982 93725176 -28118680 + B3 SINE B2 1 199 -17 4 1300 809 157 64 0 chr11 93725217 93725331 -28118525 + B1_Mur3 SINE Alu 1 116 -33 4 1300 357 24 0 0 chr11 93725331 93725373 -28118483 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1300 809 157 64 0 chr11 93725373 93725398 -28118458 + B1_Mur3 SINE Alu 117 148 -1 4 1300 261 292 710 0 chr11 93725901 93726015 -28117841 + RMER30 DNA MER1_type 7 201 -1 4 1300 418 283 35 9 chr11 93726097 93726211 -28117645 + PB1D10 SINE Alu 1 117 0 4 1300 1153 314 130 22 chr11 93726539 93727040 -28116816 + MER68 LTR ERVL 8 562 -1 4 1300 327 277 314 35 chr11 93727378 93727550 -28116306 - ID_B1 SINE B4 0 224 5 4 1300 351 255 37 28 chr11 93728251 93728360 -28115496 - PB1D10 SINE Alu -5 112 3 4 1300 1935 189 20 56 chr11 93728872 93729264 -28114592 + ORR1C1 LTR MaLR 1 378 0 4 1300 28 0 0 0 chr11 93729951 93729979 -28113877 + AT_rich Low_complexity Low_complexity 1 28 0 4 1300 2377 154 62 8 chr11 93730237 93730623 -28113233 + MTB_Mm LTR MaLR 1 407 0 4 1300 26 30 0 0 chr11 93730628 93730661 -28113195 + AT_rich Low_complexity Low_complexity 1 33 0 4 1300 963 244 34 19 chr11 93731276 93731485 -28112371 - B3 SINE B2 -3 213 2 4 1300 532 265 17 0 chr11 93731565 93731682 -28112174 + PB1D9 SINE Alu 2 120 0 4 1300 230 259 233 11 chr11 93732608 93732698 -28111158 - ID_B1 SINE B4 -17 207 98 4 1300 335 260 75 17 chr11 93732824 93732955 -28110901 - B3 SINE B2 -47 151 14 4 1300 1855 166 98 33 chr11 93733585 93734029 -28109827 + RMER4B LTR ERVK 30 451 -15 4 1300 1092 44 0 0 chr11 93734025 93734161 -28109695 + B1_Mus1 SINE Alu 13 148 0 4 1300 5062 148 61 3 chr11 93734182 93735048 -28108808 + MurERV4-int LTR ERVK 108 1023 -4237 4 1300 892 149 17 51 chr11 93735048 93735225 -28108631 + B2_Mm2 SINE B2 2 172 -23 4 1300 1506 128 118 11 chr11 93735225 93735487 -28108369 + MurERV4-int LTR ERVK 1013 1302 -3958 4 1300 1612 160 219 8 chr11 93735491 93735856 -28108000 + RMER4B LTR ERVK 144 585 0 4 1300 800 221 0 55 chr11 93735903 93736085 -28107771 + B3 SINE B2 1 172 -44 4 1300 220 238 12 12 chr11 93736113 93736198 -28107658 + GA-rich Low_complexity Low_complexity 4 88 0 4 1300 569 237 34 29 chr11 93736224 93736414 -28107442 + B3 SINE B2 6 198 0 4 1300 902 146 66 0 chr11 93736415 93736552 -28107304 - B1_Mur3 SINE Alu -2 147 2 4 1300 440 223 37 55 chr11 93736867 93736976 -28106880 + PB1D9 SINE Alu 1 107 -13 4 1300 1233 121 106 0 chr11 93737554 93737753 -28106103 + URR1A DNA MER1_type 7 226 0 4 1300 440 191 85 0 chr11 93738144 93738238 -28105618 + B1_Mur4 SINE Alu 44 145 -5 4 1300 231 265 0 0 chr11 93738733 93738782 -28105074 - RSINE1 SINE B4 -2 163 115 4 1300 189 121 0 0 chr11 93739565 93739598 -28104258 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1300 386 276 38 9 chr11 93739849 93739955 -28103901 + RSINE1 SINE B4 7 115 -50 4 1300 226 233 0 0 chr11 93739958 93740001 -28103855 + ID_B1 SINE B4 175 217 -7 4 1300 1108 97 19 0 chr11 93740118 93740272 -28103584 - B2_Mm2 SINE B2 -14 181 25 4 1300 288 180 188 3 chr11 93740345 93740417 -28103439 + B1_Mur2 SINE Alu 14 95 -54 4 1300 298 274 62 33 chr11 93741820 93741950 -28101906 + B1F SINE Alu 1 141 -8 4 1300 235 274 111 16 chr11 93741960 93742023 -28101833 + ID4_ SINE ID 1 69 -14 4 1300 515 188 205 0 chr11 93742050 93742167 -28101689 + B1_Mur3 SINE Alu 2 142 -7 4 1300 595 244 11 144 chr11 93742226 93742297 -28101559 + ID_B1 SINE B4 43 95 -129 4 1300 329 0 24 0 chr11 93742297 93742338 -28101518 + (CATA)n Simple_repeat Simple_repeat 4 45 0 4 1300 595 244 11 144 chr11 93742338 93742453 -28101403 + ID_B1 SINE B4 96 204 -20 4 1300 592 212 0 78 chr11 93742479 93742607 -28101249 + RSINE1 SINE B4 15 132 -33 4 1300 390 324 0 10 chr11 93742976 93743079 -28100777 + PB1D10 SINE Alu 4 105 -12 4 1300 396 309 62 75 chr11 93743874 93743892 -28099964 + B4 SINE B4 70 226 -64 4 1300 913 142 0 0 chr11 93743892 93744033 -28099823 + B1_Mus2 SINE Alu 7 147 0 4 1300 234 0 0 0 chr11 93745578 93745604 -28098252 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1300 24 53 0 0 chr11 93746552 93746590 -28097266 + GC_rich Low_complexity Low_complexity 1 38 0 4 1300 258 32 0 0 chr11 93746607 93746638 -28097218 + (CAGG)n Simple_repeat Simple_repeat 3 33 0 4 1300 185 229 0 0 chr11 93748328 93748363 -28095493 - L3 LINE CR1 -14 4475 4441 4 1300 240 35 0 0 chr11 93749087 93749116 -28094740 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 4 1300 380 291 34 17 chr11 93749117 93749236 -28094620 - RSINE1 SINE B4 -44 121 1 4 1300 1599 33 39 0 chr11 93749341 93749521 -28094335 - B2_Mm1t SINE B2 -5 188 2 4 1300 237 310 8 108 chr11 93750487 93750617 -28093239 + PB1D9 SINE Alu 2 118 -2 4 1300 378 283 89 24 chr11 93750803 93750926 -28092930 - ID_B1 SINE B4 -89 135 5 4 1300 189 0 0 0 chr11 93750946 93750967 -28092889 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 1300 761 69 155 0 chr11 93750990 93751106 -28092750 - B1_Mm SINE Alu -12 135 2 4 1300 783 76 193 0 chr11 93751144 93751263 -28092593 + B1_Mm SINE Alu 5 146 -1 4 1300 525 117 9 37 chr11 93751263 93751370 -28092486 + GA-rich Low_complexity Low_complexity 1 104 0 4 1300 535 218 106 31 chr11 93751626 93751787 -28092069 + MER3 DNA MER1_type 5 177 -32 4 1300 201 94 0 0 chr11 93751959 93751991 -28091865 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1300 268 315 64 9 chr11 93752255 93752364 -28091492 - PB1D10 SINE Alu -1 116 2 4 1300 367 335 49 43 chr11 93752480 93752664 -28091192 + MIRc SINE MIR 7 191 -77 4 1300 415 239 114 49 chr11 93753043 93753166 -28090690 - RSINE1 SINE B4 0 165 35 4 1300 364 208 27 14 chr11 93753192 93753265 -28090591 + ID4 SINE ID 10 83 0 4 1300 822 206 14 0 chr11 93753620 93753766 -28090090 + B1_Mur4 SINE Alu 1 148 -2 4 1300 503 279 121 51 chr11 93753784 93754195 -28089661 + Tigger7 DNA MER2_type 2224 2482 -9 4 1300 298 264 242 17 chr11 93754205 93754404 -28089452 + L1ME2z LINE L1 5668 5906 -258 4 1300 789 203 94 21 chr11 93754680 93754871 -28088985 + B3 SINE B2 1 205 -11 4 1300 938 136 14 0 chr11 93754890 93755030 -28088826 + B1_Mus2 SINE Alu 6 147 0 4 1300 394 278 27 18 chr11 93755085 93755195 -28088661 + PB1D10 SINE Alu 1 111 -6 4 1300 30 49 0 16 chr11 93755441 93755464 -28088392 + AT_rich Low_complexity Low_complexity 1 23 0 4 1300 345 284 25 41 chr11 93755464 93755585 -28088271 + PB1D7 SINE Alu 1 119 -1 4 1300 30 49 0 16 chr11 93755585 93755623 -28088233 + AT_rich Low_complexity Low_complexity 1 38 0 4 1300 863 135 8 0 chr11 93755798 93755924 -28087932 + B1_Mus1 SINE Alu 22 148 0 4 1300 551 255 127 7 chr11 93756086 93756228 -28087628 + B3A SINE B2 1 159 -39 5 1300 465 211 147 0 chr11 93756325 93756420 -28087436 + PB1D9 SINE Alu 3 111 -9 5 1300 603 268 0 9 chr11 93757156 93757269 -28086587 - B1_Mur1 SINE Alu -13 136 25 5 1300 400 168 263 9 chr11 93757382 93757496 -28086360 + B1F2 SINE Alu 6 148 -1 5 1300 342 346 58 16 chr11 93757560 93757751 -28086105 + L1MC4 LINE L1 6820 7018 -1024 5 1300 250 256 51 0 chr11 93757958 93758036 -28085820 + L1MC4 LINE L1 7336 7417 -625 5 1300 180 0 0 0 chr11 93758210 93758230 -28085626 + (GGGGA)n Simple_repeat Simple_repeat 5 24 0 5 1300 443 288 33 17 chr11 93758282 93758402 -28085454 - B1F SINE Alu -26 123 2 5 1300 1090 112 89 0 chr11 93758442 93758611 -28085245 + B2_Mm2 SINE B2 5 188 -7 5 1300 229 261 83 23 chr11 93758686 93758819 -28085037 + L1MC4 LINE L1 7899 8039 -3 5 1300 1109 264 42 11 chr11 93759168 93759451 -28084405 + B4A SINE B4 1 292 0 5 1300 307 289 50 20 chr11 93759692 93759791 -28084065 - PB1D10 SINE Alu -10 107 6 5 1300 595 278 32 19 chr11 93759718 93759876 -28083980 - ID_B1 SINE B4 -63 161 2 5 1300 330 87 0 0 chr11 93759876 93759922 -28083934 + (TTTTC)n Simple_repeat Simple_repeat 4 49 0 5 1300 406 232 38 165 chr11 93759922 93759944 -28083912 - B2_Mm2 SINE B2 0 195 180 5 1300 670 228 79 22 chr11 93759944 93760083 -28083773 - B1_Mus2 SINE Alu 0 147 1 5 1300 750 232 38 165 chr11 93760083 93760272 -28083584 - B3 SINE B2 -6 210 11 5 1300 578 49 0 24 chr11 93760412 93760496 -28083360 - L1Md_F2 LINE L1 0 6582 6501 5 1300 355 208 62 31 chr11 93760500 93760629 -28083227 - L1M5 LINE L1 -915 5429 5297 5 1300 201 74 0 0 chr11 93760681 93760708 -28083148 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1300 453 279 147 61 chr11 93760711 93760909 -28082947 - ID_B1 SINE B4 0 224 10 5 1300 288 351 8 67 chr11 93760914 93761033 -28082823 - PB1D10 SINE Alu 0 117 6 5 1300 328 241 12 37 chr11 93761078 93761160 -28082696 - ID_B1 SINE B4 -18 206 127 5 1300 242 343 39 19 chr11 93761160 93761182 -28082674 - B1F1 SINE Alu -18 131 26 5 1300 213 167 241 0 chr11 93761175 93761229 -28082627 - ID SINE ID -156 68 2 5 1300 234 0 0 0 chr11 93761247 93761273 -28082583 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1300 495 312 8 8 chr11 93761372 93761498 -28082358 - RSINE1 SINE B4 -38 127 2 5 1300 1220 75 0 0 chr11 93761538 93761685 -28082171 + B1_Mus2 SINE Alu 1 147 0 5 1300 317 236 95 3 chr11 93762073 93762171 -28081685 + B1F SINE Alu 6 113 -7 5 1300 337 287 171 0 chr11 93762183 93762364 -28081492 - L1M5 LINE L1 -1584 4562 4351 5 1300 316 172 185 54 chr11 93762439 93762531 -28081325 + B3 SINE B2 36 139 -77 5 1300 395 238 77 11 chr11 93762686 93762822 -28081034 + B3A SINE B2 2 163 -35 5 1300 314 237 35 6 chr11 93763151 93763226 -28080630 - PB1D10 SINE Alu -52 95 20 5 1300 1373 209 95 56 chr11 93763226 93763585 -28080271 + MTD LTR MaLR 1 373 -46 5 1300 213 65 0 0 chr11 93763821 93763852 -28080004 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1300 475 130 290 0 chr11 93763895 93763995 -28079861 - B1_Mur2 SINE Alu 0 149 21 5 1300 238 169 114 71 chr11 93763935 93764005 -28079851 - MT2B LTR ERVL -351 250 178 5 1300 507 236 29 153 chr11 93764362 93764532 -28079324 - B1_Mur2 SINE Alu 0 149 1 5 1300 405 115 0 0 chr11 93764628 93764706 -28079150 + (T)n Simple_repeat Simple_repeat 1 78 0 5 1300 1192 81 0 7 chr11 93764706 93764855 -28079001 - B1_Mus1 SINE Alu 0 148 1 5 1300 1061 223 335 12 chr11 93764896 93765308 -28078548 - RMER15 LTR ERVL -3 572 27 5 1300 432 214 58 25 chr11 93765669 93765789 -28078067 - MARNA DNA Mariner -162 424 301 5 1300 881 209 145 0 chr11 93766013 93766185 -28077671 + B3 SINE B2 4 200 -16 5 1300 382 196 53 32 chr11 93766252 93766347 -28077509 + PB1D7 SINE Alu 22 118 -2 5 1300 435 270 26 18 chr11 93766755 93766868 -28076988 - PB1D10 SINE Alu 0 117 4 5 1300 712 132 0 0 chr11 93766892 93766998 -28076858 - B2_Mm2 SINE B2 -88 107 2 5 1300 236 249 95 46 chr11 93767319 93767425 -28076431 - PB1D7 SINE Alu -7 113 3 5 1300 245 241 37 0 chr11 93767583 93767637 -28076219 + ID4 SINE ID 28 83 0 5 1300 598 296 94 22 chr11 93767714 93767894 -28075962 + B4 SINE B4 6 198 -94 5 1300 335 170 253 33 chr11 93768042 93768133 -28075723 + PB1D9 SINE Alu 9 119 -1 5 1300 695 234 14 14 chr11 93768165 93768312 -28075544 + B1_Mur3 SINE Alu 3 149 0 5 1300 772 169 35 56 chr11 93768517 93768661 -28075195 + B1_Mur1 SINE Alu 7 147 -2 5 1300 293 213 0 0 chr11 93768843 93768890 -28074966 - B1_Mus1 SINE Alu -91 57 11 5 1300 304 253 50 40 chr11 93769198 93769297 -28074559 - B1F SINE Alu -7 142 43 5 1300 720 125 0 0 chr11 93769742 93769870 -28073986 + (CA)n Simple_repeat Simple_repeat 2 129 0 5 1300 306 280 99 10 chr11 93772236 93772337 -28071519 - PB1D10 SINE Alu -7 110 1 5 1300 22 0 0 0 chr11 93772347 93772369 -28071487 + AT_rich Low_complexity Low_complexity 1 22 0 5 1300 928 151 14 14 chr11 93772400 93772548 -28071308 + B1_Mus1 SINE Alu 1 148 0 5 1300 679 252 37 37 chr11 93772591 93772752 -28071104 + RSINE1 SINE B4 4 164 -1 5 1300 3024 129 134 4 chr11 93772766 93773304 -28070552 - RLTR33 LTR ERVK 0 678 71 5 1300 355 146 31 134 chr11 93773383 93773510 -28070346 + Lx3A LINE L1 6861 6974 -7 5 1300 180 0 0 0 chr11 93774328 93774348 -28069508 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1300 456 327 0 0 chr11 93775553 93775657 -28068199 + ID_B1 SINE B4 84 187 -37 5 1300 1579 58 21 0 chr11 93776290 93776480 -28067376 - B2_Mm2 SINE B2 0 195 2 5 1300 522 306 53 21 chr11 93776600 93776790 -28067066 + B3A SINE B2 3 198 0 5 1300 390 335 17 12 chr11 93776813 93776949 -28066907 + B1F1 SINE Alu 1 134 -13 5 1300 384 287 16 50 chr11 93777275 93777396 -28066460 + PB1D10 SINE Alu 1 117 0 5 1300 657 237 101 58 chr11 93777573 93777761 -28066095 - B3A SINE B2 -1 197 2 5 1300 225 0 0 0 chr11 93777882 93777907 -28065949 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1300 335 343 39 19 chr11 93777947 93778051 -28065805 - PB1D10 SINE Alu -11 106 1 5 1300 345 337 40 0 chr11 93778125 93778226 -28065630 - PB1D7 SINE Alu -7 113 9 5 1300 1194 54 0 26 chr11 93778672 93778823 -28065033 - B1_Mus2 SINE Alu 0 147 1 5 1300 261 83 0 0 chr11 93779060 93779096 -28064760 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 5 1300 482 296 0 39 chr11 93779156 93779313 -28064543 + B1F SINE Alu 3 141 -8 5 1300 195 69 0 0 chr11 93779529 93779558 -28064298 + (ATTTG)n Simple_repeat Simple_repeat 1 29 0 5 1300 407 255 0 35 chr11 93779576 93779700 -28064156 - PB1D10 SINE Alu -10 107 1 5 1300 534 239 21 69 chr11 93781202 93781346 -28062510 + B1F2 SINE Alu 4 140 -9 5 1300 324 307 105 42 chr11 93782906 93783144 -28060712 - MER58B DNA MER1_type -1 340 88 5 1300 511 226 2 33 chr11 93783249 93783390 -28060466 + B1_Mm SINE Alu 9 145 -5 5 1300 234 318 82 0 chr11 93783822 93783907 -28059949 + B4 SINE B4 191 282 -10 5 1300 186 43 0 0 chr11 93783914 93783937 -28059919 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1300 312 242 39 69 chr11 93783977 93784079 -28059777 + PB1D7 SINE Alu 17 115 -5 5 1300 641 255 64 35 chr11 93784641 93784844 -28059012 - B3 SINE B2 -6 210 2 5 1300 438 273 0 20 chr11 93785297 93785398 -28058458 + PB1D7 SINE Alu 16 114 -6 5 1300 586 252 0 0 chr11 93785402 93785521 -28058335 + B1_Mur2 SINE Alu 1 119 -30 5 1300 380 298 53 0 chr11 93786360 93786474 -28057382 + PB1 SINE Alu 6 125 -2 5 1300 807 102 17 8 chr11 93786807 93786926 -28056930 + PB1D9 SINE Alu 1 120 0 5 1300 549 0 0 0 chr11 93787684 93787745 -28056111 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1300 619 149 93 9 chr11 93788017 93788125 -28055731 + B1_Mur3 SINE Alu 1 117 -32 5 1300 301 167 27 14 chr11 93788146 93788219 -28055637 - RCHARR1 DNA MER1_type -148 826 753 5 1300 274 171 68 41 chr11 93788222 93788295 -28055561 - RCHARR1 DNA MER1_type -512 462 388 5 1300 495 248 17 0 chr11 93788469 93788586 -28055270 - PB1D9 SINE Alu 0 120 2 5 1300 665 270 70 11 chr11 93788586 93788765 -28055091 - MTD LTR MaLR -229 190 1 5 1300 397 216 0 0 chr11 93788817 93788891 -28054965 + ID4 SINE ID 1 74 -9 5 1300 842 237 21 10 chr11 93788951 93789143 -28054713 + B3 SINE B2 9 202 -14 5 1300 374 286 14 57 chr11 93789549 93789565 -28054291 + ID_B1 SINE B4 79 213 -11 5 1300 578 232 32 0 chr11 93789565 93789690 -28054166 + B1_Mur1 SINE Alu 10 138 -11 5 1300 214 342 14 0 chr11 93790100 93790173 -28053683 + ID_B1 SINE B4 80 153 -71 5 1300 387 0 0 0 chr11 93790450 93790493 -28053363 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1300 295 308 47 19 chr11 93790494 93790600 -28053256 - RSINE1 SINE B4 -40 125 17 5 1300 628 234 14 7 chr11 93791246 93791384 -28052472 + B1F2 SINE Alu 1 139 -10 5 1300 839 133 285 0 chr11 93791417 93791582 -28052274 + B3 SINE B2 1 212 -4 5 1300 279 0 0 0 chr11 93791709 93791740 -28052116 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1300 455 201 199 70 chr11 93791761 93791932 -28051924 - B3 SINE B2 0 216 24 5 1300 1034 97 20 7 chr11 93792102 93792248 -28051608 - B1_Mus1 SINE Alu 0 148 1 5 1300 444 254 175 0 chr11 93792250 93792376 -28051480 - B1_Mur1 SINE Alu -1 148 1 5 1300 250 172 16 65 chr11 93792597 93792659 -28051197 + ID4 SINE ID 12 70 -13 6 1300 474 18 0 0 chr11 93792674 93792729 -28051127 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1300 364 308 53 33 chr11 93792835 93792986 -28050870 + ID_B1 SINE B4 70 223 -1 6 1300 491 90 0 13 chr11 93793344 93793423 -28050433 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1300 21 36 0 0 chr11 93793795 93793823 -28050033 + AT_rich Low_complexity Low_complexity 1 28 0 6 1300 7988 62 20 1 chr11 93794107 93795125 -28048731 - L1_Mus3 LINE L1 -6 6632 5596 6 1300 1181 61 0 13 chr11 93795465 93795614 -28048242 + B1_Mus2 SINE Alu 1 147 0 6 1300 212 255 20 0 chr11 93795615 93795666 -28048190 + GA-rich Low_complexity Low_complexity 2 53 0 6 1300 1222 55 0 0 chr11 93795876 93796022 -28047834 + B1_Mus2 SINE Alu 2 147 0 6 1300 601 221 29 0 chr11 93796075 93796211 -28047645 + B1_Mur3 SINE Alu 9 148 -1 6 1300 650 286 11 9 chr11 93796959 93797121 -28046735 + ID_B1 SINE B4 82 249 -43 6 1300 215 204 19 0 chr11 93797170 93797224 -28046632 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1300 447 245 66 0 chr11 93797262 93797368 -28046488 + PB1D7 SINE Alu 2 114 -6 6 1300 568 284 28 11 chr11 93797383 93797561 -28046295 + B3A SINE B2 9 189 -9 6 1300 542 292 15 0 chr11 93798276 93798406 -28045450 + B1F SINE Alu 9 140 -9 6 1300 412 285 81 92 chr11 93798454 93798628 -28045228 + B4 SINE B4 22 193 -99 6 1300 477 289 91 11 chr11 93798792 93798967 -28044889 + B3A SINE B2 28 216 0 6 1300 530 298 30 24 chr11 93799676 93799924 -28043932 + ID_B1 SINE B4 20 221 -3 6 1300 1157 96 56 17 chr11 93799924 93800104 -28043752 + B2_Mm2 SINE B2 1 187 -8 6 1300 530 301 63 42 chr11 93800104 93800129 -28043727 + ID_B1 SINE B4 193 214 -10 6 1300 37 0 0 0 chr11 93800455 93800492 -28043364 + AT_rich Low_complexity Low_complexity 1 37 0 6 1300 183 80 0 0 chr11 93801141 93801166 -28042690 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1300 474 214 0 48 chr11 93803418 93803521 -28040335 + B1_Mur1 SINE Alu 51 148 -1 6 1300 346 312 0 70 chr11 93803578 93803678 -28040178 - PB1D10 SINE Alu -21 96 4 6 1300 290 321 25 0 chr11 93803736 93803817 -28040039 + ID4_ SINE ID 1 83 0 6 1300 228 314 48 19 chr11 93803828 93803932 -28039924 + PB1D10 SINE Alu 2 108 -9 6 1300 790 120 17 0 chr11 93804169 93804286 -28039570 + PB1D9 SINE Alu 1 119 -1 6 1300 237 33 0 0 chr11 93804287 93804317 -28039539 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1300 261 0 0 0 chr11 93804382 93804411 -28039445 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1300 225 226 0 0 chr11 93804411 93804464 -28039392 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 6 1300 299 284 0 47 chr11 93804486 93804571 -28039285 + PB1D10 SINE Alu 23 103 -14 6 1300 278 250 0 18 chr11 93804787 93804844 -28039012 + ID4_ SINE ID 2 57 -26 6 1300 210 118 0 0 chr11 93806615 93806649 -28037207 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1300 21 0 0 0 chr11 93807748 93807769 -28036087 + AT_rich Low_complexity Low_complexity 1 21 0 6 1300 255 191 87 14 chr11 93808959 93809028 -28034828 - ID SINE ID -150 74 1 6 1300 383 296 38 50 chr11 93809270 93809430 -28034426 + RSINE1 SINE B4 2 159 -6 6 1300 365 183 156 78 chr11 93809764 93809918 -28033938 + B2_Mm2 SINE B2 1 166 -29 6 1300 326 177 112 12 chr11 93809967 93810047 -28033809 - PB1D7 SINE Alu -32 88 1 6 1300 593 194 52 44 chr11 93810248 93810383 -28033473 + B1_Mur3 SINE Alu 5 140 -9 6 1300 415 231 55 18 chr11 93810444 93810554 -28033302 + B3A SINE B2 3 116 -82 6 1300 296 250 154 29 chr11 93810603 93810739 -28033117 + B3 SINE B2 7 159 -57 6 1300 792 180 27 38 chr11 93811389 93811574 -28032282 - B2_Mm2 SINE B2 -11 184 2 6 1300 210 37 0 0 chr11 93811665 93811692 -28032164 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 6 1300 821 53 0 50 chr11 93811856 93811976 -28031880 + B1_Mm SINE Alu 3 116 -31 6 1300 267 272 206 0 chr11 93811981 93812073 -28031783 + B3 SINE B2 39 149 -67 6 1300 288 265 0 14 chr11 93812285 93812354 -28031502 - ID_B1 SINE B4 -35 189 122 6 1300 439 220 22 0 chr11 93812383 93812474 -28031382 - B1_Mus2 SINE Alu -3 144 52 6 1300 429 235 0 40 chr11 93812536 93812660 -28031196 - PB1D9 SINE Alu -1 119 1 6 1300 1370 65 32 16 chr11 93812732 93812919 -28030937 - B2_Mm1a SINE B2 -1 192 3 6 1300 403 206 0 27 chr11 93814425 93814500 -28029356 + ID4_ SINE ID 2 74 -9 6 1300 267 286 36 0 chr11 93814744 93814828 -28029028 + ID_B1 SINE B4 81 167 -57 6 1300 389 223 85 0 chr11 93814753 93814847 -28029009 + PB1D10 SINE Alu 10 111 -6 6 1300 771 153 29 0 chr11 93814854 93814991 -28028865 + B1_Mus1 SINE Alu 8 148 0 6 1300 709 187 199 0 chr11 93815141 93815312 -28028544 - B3 SINE B2 -11 205 1 6 1300 732 149 96 7 chr11 93815328 93815463 -28028393 - B1_Mus2 SINE Alu 0 147 1 6 1300 813 196 77 39 chr11 93815468 93815675 -28028181 - B3 SINE B2 -1 215 1 6 1300 766 53 239 0 chr11 93815740 93815853 -28028003 + B1_Mus2 SINE Alu 2 141 -6 6 1300 270 0 0 0 chr11 93815855 93815885 -28027971 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1300 23 0 0 0 chr11 93815906 93815929 -28027927 + AT_rich Low_complexity Low_complexity 1 23 0 6 1300 450 36 0 0 chr11 93815936 93815992 -28027864 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 6 1300 186 43 0 0 chr11 93816054 93816077 -28027779 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1300 1077 88 0 7 chr11 93816077 93816225 -28027631 - B1_Mm SINE Alu 0 147 1 6 1300 228 290 151 0 chr11 93816227 93816320 -28027536 - B4A SINE B4 -140 152 46 6 1300 409 214 165 33 chr11 93817971 93818092 -28025764 + ID_B1 SINE B4 80 216 -8 6 1300 512 202 96 96 chr11 93818104 93818301 -28025555 + B3A SINE B2 1 197 -1 6 1300 259 239 29 29 chr11 93818408 93818477 -28025379 + ID4_ SINE ID 5 73 -10 6 1300 469 203 161 0 chr11 93819329 93819447 -28024409 - B1F2 SINE Alu -8 141 5 6 1300 758 175 95 0 chr11 93819689 93819826 -28024030 - B1_Mur4 SINE Alu 0 150 1 6 1300 951 176 114 15 chr11 93819827 93820029 -28023827 - ID_B1 SINE B4 0 224 3 6 1300 316 113 0 19 chr11 93820071 93820125 -28023731 - PB1D9 SINE Alu -67 53 1 6 1300 548 212 26 0 chr11 93820131 93820244 -28023612 - PB1D10 SINE Alu -1 116 1 6 1300 391 250 10 10 chr11 93821144 93821245 -28022611 + ID_B1 SINE B4 121 221 -3 6 1300 1161 49 14 0 chr11 93821300 93821443 -28022413 - B1_Mm SINE Alu -2 145 1 6 1300 1507 48 16 5 chr11 93821447 93821634 -28022222 - B2_Mm2 SINE B2 -5 190 2 6 1300 984 206 30 0 chr11 93821637 93821836 -28022020 + B3 SINE B2 12 216 0 6 1300 498 217 52 0 chr11 93822343 93822458 -28021398 + B1_Mur2 SINE Alu 28 148 -1 6 1300 597 213 16 8 chr11 93822441 93822564 -28021292 + ORR1C1-int LTR MaLR 896 1019 -351 6 1300 1518 45 0 6 chr11 93822565 93822744 -28021112 + B2_Mm2 SINE B2 2 179 -16 6 1300 711 112 0 0 chr11 93822744 93822851 -28021005 + (GGAA)n Simple_repeat Simple_repeat 2 108 0 6 1300 1327 170 48 82 chr11 93822868 93823247 -28020609 + ORR1C1-int LTR MaLR 1144 1509 0 6 1300 1966 158 46 19 chr11 93823247 93823614 -28020242 + ORR1C1 LTR MaLR 1 377 -1 6 1300 272 231 0 30 chr11 93823866 93823933 -28019923 + B1F SINE Alu 75 139 -10 6 1300 1297 143 23 9 chr11 93824049 93824267 -28019589 - URR1B DNA MER1_type 0 225 5 6 1300 738 64 0 9 chr11 93824663 93824773 -28019083 + BC1_Mm scRNA scRNA 1 109 -43 6 1300 188 351 65 19 chr11 93825373 93825530 -28018326 + MIRc SINE MIR 21 185 -83 6 1300 484 251 115 16 chr11 93825727 93825909 -28017947 + B3 SINE B2 3 202 -14 6 1300 754 180 36 1 chr11 93825936 93826098 -28017758 - B2_Mm2 SINE B2 -16 182 1 6 1300 183 42 0 0 chr11 93826112 93826136 -28017720 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1300 552 254 8 0 chr11 93826148 93826274 -28017582 + B1_Mur3 SINE Alu 3 129 -20 6 1300 192 182 0 0 chr11 93826282 93826326 -28017530 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 1300 971 47 148 0 chr11 93827672 93827800 -28016056 + B1_Mm SINE Alu 1 147 0 6 1300 239 292 36 54 chr11 93827919 93828031 -28015825 + PB1D10 SINE Alu 1 110 -7 6 1300 322 134 0 29 chr11 93828045 93828114 -28015742 + GA-rich Low_complexity Low_complexity 2 68 0 6 1300 743 317 43 75 chr11 93828142 93828487 -28015369 + Lx8 LINE L1 7140 7473 0 6 1300 198 268 48 12 chr11 93829238 93829321 -28014535 - L2c LINE L2 0 3387 3302 6 1300 694 181 31 8 chr11 93830268 93830396 -28013460 - B1_Mur2 SINE Alu -17 132 2 6 1300 975 171 26 21 chr11 93830404 93830595 -28013261 - B2_Mm2 SINE B2 -3 192 1 6 1300 566 260 0 26 chr11 93830612 93830766 -28013090 - B3A SINE B2 -47 151 2 6 1300 214 146 20 20 chr11 93830774 93830823 -28013033 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 6 1300 275 213 40 50 chr11 93830869 93830968 -28012888 + PB1D9 SINE Alu 20 117 -3 6 1300 404 250 0 39 chr11 93830967 93831071 -28012785 + B1_Mur1 SINE Alu 49 148 -1 6 1300 294 176 29 14 chr11 93831097 93831166 -28012690 + L1MD2 LINE L1 5298 5367 -992 6 1300 747 270 71 5 chr11 93831201 93831398 -28012458 + ID_B1 SINE B4 14 223 -1 6 1300 867 140 147 0 chr11 93831409 93831566 -28012290 + B2_Mm1a SINE B2 1 180 -13 7 1300 295 98 314 59 chr11 93831620 93831738 -28012118 + B2_Mm2 SINE B2 48 195 0 7 1300 321 275 57 38 chr11 93831755 93831861 -28011995 + B1F SINE Alu 1 108 -41 7 1300 323 268 31 0 chr11 93831890 93831987 -28011869 + L1MD2 LINE L1 5391 5490 -869 6 1300 380 323 0 0 chr11 93832077 93832176 -28011680 + ID_B1 SINE B4 125 223 -1 7 1300 384 240 19 29 chr11 93832558 93832661 -28011195 + PB1 SINE Alu 22 123 -4 7 1300 264 354 0 48 chr11 93832717 93832800 -28011056 - ID4_ SINE ID -2 81 3 7 1300 279 210 133 4 chr11 93832802 93832916 -28010940 + L1MD2 LINE L1 5922 6050 -192 6 1300 267 283 0 0 chr11 93832955 93833008 -28010848 - B1F SINE Alu -95 54 2 7 1300 254 95 24 0 chr11 93833039 93833081 -28010775 + (TTAG)n Simple_repeat Simple_repeat 3 45 0 7 1300 1670 156 48 85 chr11 93833224 93833624 -28010232 + RLTR41 LTR ERV1 62 446 0 7 1300 685 176 64 0 chr11 93833847 93833972 -28009884 - B1_Mus1 SINE Alu -15 133 1 7 1300 843 212 90 35 chr11 93834047 93834321 -28009535 - ORR1D1 LTR MaLR -52 326 2 7 1300 259 295 80 58 chr11 93834368 93834505 -28009351 + ID_B1 SINE B4 77 216 -8 7 1300 262 197 60 15 chr11 93834522 93834589 -28009267 + ID4 SINE ID 4 73 -10 7 1300 181 345 92 12 chr11 93834741 93834914 -28008942 - L2 LINE L2 -664 2755 2569 7 1300 272 239 141 0 chr11 93834962 93835033 -28008823 + ID_B1 SINE B4 88 168 -56 7 1300 258 250 98 71 chr11 93835033 93835059 -28008797 + PB1D10 SINE Alu 7 107 -10 7 1300 1058 61 0 104 chr11 93835059 93835223 -28008633 + B1_Mus2 SINE Alu 1 147 0 7 1300 691 93 75 0 chr11 93835254 93835361 -28008495 + B2_Mm1t SINE B2 2 116 -77 7 1300 225 283 52 52 chr11 93835403 93835500 -28008356 - MER5A1 DNA MER1_type -2 164 68 7 1300 26 0 0 0 chr11 93835612 93835638 -28008218 + AT_rich Low_complexity Low_complexity 1 26 0 7 1300 389 333 59 0 chr11 93835651 93835786 -28008070 - RSINE1 SINE B4 -18 147 5 7 1300 443 78 68 0 chr11 93836060 93836163 -28007693 + (TA)n Simple_repeat Simple_repeat 2 111 0 7 1300 1278 187 67 85 chr11 93836163 93836571 -28007285 - MT2A LTR ERVL -73 460 2 7 1300 303 260 14 0 chr11 93836692 93836765 -28007091 - ID4 SINE ID -3 80 7 7 1300 381 229 128 24 chr11 93836786 93836911 -28006945 - B1F SINE Alu -1 148 11 7 1300 796 251 56 111 chr11 93836920 93836944 -28006912 - MT2A LTR ERVL 0 601 578 7 1300 1112 113 165 0 chr11 93836944 93837138 -28006718 + URR1A DNA MER1_type 1 226 0 7 1300 796 251 56 111 chr11 93837138 93837174 -28006682 - MT2A LTR ERVL -24 577 552 7 1300 495 0 0 0 chr11 93837174 93837229 -28006627 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 7 1300 1217 220 79 46 chr11 93837229 93837628 -28006228 - MT2A LTR ERVL -50 551 3 7 1300 30 27 0 0 chr11 93837640 93837677 -28006179 + AT_rich Low_complexity Low_complexity 1 37 0 7 1300 496 294 8 8 chr11 93837741 93837861 -28005995 + RSINE1 SINE B4 20 139 -26 7 1300 491 296 49 7 chr11 93837920 93838063 -28005793 + B1F SINE Alu 1 149 0 7 1300 394 327 31 25 chr11 93838334 93838497 -28005359 + MIRb SINE MIR 69 232 -36 7 1300 198 0 0 0 chr11 93838505 93838527 -28005329 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1300 351 0 0 0 chr11 93838527 93838565 -28005291 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1300 212 146 42 0 chr11 93838663 93838711 -28005145 + (GTTTG)n Simple_repeat Simple_repeat 5 54 0 7 1300 1111 95 0 0 chr11 93838711 93838858 -28004998 - B1_Mus1 SINE Alu 0 148 2 7 1300 453 253 33 148 chr11 93838995 93839037 -28004819 + RMER10A LTR ERVL 122 163 -279 7 1300 243 0 0 0 chr11 93839037 93839064 -28004792 + (TTCCC)n Simple_repeat Simple_repeat 5 31 0 7 1300 453 253 33 148 chr11 93839064 93839351 -28004505 + RMER10A LTR ERVL 164 413 -29 7 1300 207 0 0 0 chr11 93839440 93839463 -28004393 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1300 431 149 21 31 chr11 93839478 93839575 -28004281 + Lx4B LINE L1 6959 7054 -4 7 1300 1189 62 0 0 chr11 93839594 93839739 -28004117 + B1_Mus1 SINE Alu 1 145 -3 7 1300 422 266 9 17 chr11 93839804 93839919 -28003937 - PB1D10 SINE Alu 0 117 4 7 1300 1079 114 91 0 chr11 93839955 93839972 -28003884 - B2_Mm1a SINE B2 -1 192 176 7 1300 207 0 0 0 chr11 93839972 93839995 -28003861 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1300 1079 114 91 0 chr11 93839995 93840153 -28003703 - B2_Mm1a SINE B2 -18 175 2 7 1300 1537 37 26 16 chr11 93840160 93840351 -28003505 - B2_Mm1t SINE B2 0 193 1 7 1300 279 183 38 97 chr11 93840377 93840495 -28003361 - PB1D7 SINE Alu -3 117 6 7 1300 338 275 28 38 chr11 93841419 93841430 -28002426 - B1_Mur4 SINE Alu -12 138 130 7 1300 995 66 7 0 chr11 93841430 93841566 -28002290 + (TTCC)n Simple_repeat Simple_repeat 3 139 0 7 1300 394 277 25 32 chr11 93841566 93841678 -28002178 - B1F SINE Alu -21 129 14 7 1300 472 217 18 28 chr11 93841701 93841810 -28002046 - PB1D10 SINE Alu -9 108 1 7 1300 263 0 85 0 chr11 93841822 93841869 -28001987 + (TTG)n Simple_repeat Simple_repeat 2 52 0 7 1300 806 48 0 0 chr11 93841869 93841974 -28001882 - B1_Mus1 SINE Alu -8 140 36 7 1300 180 361 0 0 chr11 93841982 93842043 -28001813 - MIRm SINE MIR -117 159 99 7 1300 627 14 0 0 chr11 93842090 93842162 -28001694 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1300 636 198 56 0 chr11 93842198 93842324 -28001532 - B1F1 SINE Alu -10 139 7 7 1300 299 320 130 51 chr11 93842663 93842979 -28000877 - MLT1I LTR MaLR 0 411 71 7 1300 414 250 55 31 chr11 93843508 93843636 -28000220 + RMER1B Other Other 578 708 -358 7 1300 3549 254 77 92 chr11 93843802 93845517 -27998339 + RMER1C Other Other 30 1334 -8 7 1300 182 37 0 36 chr11 93845523 93845551 -27998305 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1300 441 261 59 0 chr11 93845713 93845832 -27998024 - ID_B1 SINE B4 0 224 99 7 1300 544 256 0 23 chr11 93845988 93846116 -27997740 - B1F SINE Alu -22 127 3 7 1300 763 182 0 0 chr11 93846431 93846557 -27997299 + B1_Mus1 SINE Alu 2 127 -21 7 1300 37 0 0 0 chr11 93846582 93846619 -27997237 + AT_rich Low_complexity Low_complexity 1 37 0 7 1300 1443 49 33 0 chr11 93847046 93847230 -27996626 - B2_Mm2 SINE B2 -4 191 2 7 1300 777 200 0 0 chr11 93847231 93847361 -27996495 - B1_Mur1 SINE Alu -17 132 3 7 1300 569 278 14 7 chr11 93847379 93847524 -27996332 - B1F2 SINE Alu 0 149 4 7 162 231 376 55 71 chr11 93847524 93847564 -27996292 - B4 SINE B4 -212 80 44 7 1301 198 103 0 0 chr11 93847616 93847645 -27996211 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 1301 843 210 81 0 chr11 93847648 93847834 -27996022 - B3 SINE B2 -15 201 1 7 1301 350 17 16 48 chr11 93847894 93847956 -27995900 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 7 1301 1023 76 45 0 chr11 93847956 93848088 -27995768 - B1_Mus2 SINE Alu -9 138 1 7 1301 500 240 77 8 chr11 93848141 93848271 -27995585 - B1F1 SINE Alu -1 148 10 7 1301 230 135 0 0 chr11 93848405 93848442 -27995414 + U6 snRNA snRNA 1 37 -70 7 1301 641 146 7 49 chr11 93848573 93848721 -27995135 - B1_Mur1 SINE Alu -16 134 3 7 1301 433 262 7 51 chr11 93849586 93849723 -27994133 - B1F SINE Alu -17 132 2 7 1301 374 274 68 38 chr11 93850572 93850705 -27993151 - RSINE1 SINE B4 -17 148 12 7 1301 21 36 0 0 chr11 93850714 93850742 -27993114 + AT_rich Low_complexity Low_complexity 1 28 0 7 1301 333 0 0 0 chr11 93850800 93850837 -27993019 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1301 469 234 7 21 chr11 93850838 93850982 -27992874 - RMER10B LTR ERVL -63 335 194 7 1301 314 145 14 28 chr11 93851961 93852032 -27991824 - RMER4A LTR ERVK -396 70 1 7 1301 189 175 0 0 chr11 93852040 93852080 -27991776 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7 1301 515 207 18 9 chr11 93852086 93852198 -27991658 - ID_B1 SINE B4 -7 217 105 7 1301 410 293 60 8 chr11 93852198 93852220 -27991636 - B1F1 SINE Alu -7 142 2 7 1301 1379 80 16 16 chr11 93852242 93852433 -27991423 - B2_Mm2 SINE B2 -3 192 2 7 1301 678 199 0 30 chr11 93852439 93852574 -27991282 - B1_Mur3 SINE Alu -2 147 17 7 1301 63 67 0 0 chr11 93852585 93852704 -27991152 + AT_rich Low_complexity Low_complexity 1 119 0 7 1301 409 289 52 7 chr11 93852713 93852849 -27991007 - RSINE1 SINE B4 -21 144 3 7 1301 279 0 0 0 chr11 93853230 93853261 -27990595 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 7 1301 476 250 27 27 chr11 93853279 93853427 -27990429 - B1F SINE Alu -1 148 1 7 1301 960 221 208 3 chr11 93853427 93853744 -27990112 - L1MB8 LINE L1 -4 6174 5793 7 1301 420 147 27 0 chr11 93853773 93853848 -27990008 + B2_Mm2 SINE B2 64 140 -55 7 1301 976 234 33 9 chr11 93853885 93854096 -27989760 - B3 SINE B2 0 216 1 7 1301 545 256 50 25 chr11 93854286 93854446 -27989410 - B3A SINE B2 -27 171 8 7 1301 501 205 181 0 chr11 93854479 93854606 -27989250 + B1_Mur4 SINE Alu 1 150 0 7 1301 415 134 12 12 chr11 93854608 93854691 -27989165 + GA-rich Low_complexity Low_complexity 2 84 0 7 1301 256 312 54 18 chr11 93854728 93854839 -27989017 - RSINE1 SINE B4 -28 137 23 7 1301 334 215 53 53 chr11 93854846 93854878 -27988978 - B3A SINE B2 -6 192 160 7 1301 321 89 0 0 chr11 93854878 93854923 -27988933 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1301 334 215 53 53 chr11 93854923 93855003 -27988853 - B3A SINE B2 -39 159 80 7 1301 249 57 0 0 chr11 93855036 93855071 -27988785 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1301 541 327 7 7 chr11 93855154 93855308 -27988548 - RSINE1 SINE B4 -10 155 2 7 1301 296 242 0 15 chr11 93855372 93855439 -27988417 + RSINE1 SINE B4 42 107 -58 7 1301 866 150 7 0 chr11 93855471 93855611 -27988245 + B1_Mur4 SINE Alu 10 150 0 8 1301 792 205 60 5 chr11 93855856 93856057 -27987799 + B3 SINE B2 5 216 0 8 1301 220 276 32 65 chr11 93856972 93857065 -27986791 + MIRc SINE MIR 60 149 -119 8 1301 21 0 0 0 chr11 93857236 93857257 -27986599 + GC_rich Low_complexity Low_complexity 1 21 0 8 1301 36 104 0 0 chr11 93857270 93857404 -27986452 + GC_rich Low_complexity Low_complexity 1 134 0 8 1301 201 178 0 62 chr11 93857465 93857513 -27986343 + (CCCCAG)n Simple_repeat Simple_repeat 6 50 0 8 1301 27 29 0 0 chr11 93857547 93857581 -27986275 + GC_rich Low_complexity Low_complexity 1 34 0 8 1301 876 153 0 26 chr11 93859567 93859721 -27984135 - B1_Mur4 SINE Alu 0 150 1 8 1301 375 23 0 0 chr11 93859904 93859948 -27983908 + (CAG)n Simple_repeat Simple_repeat 1 44 0 8 1301 1016 139 0 0 chr11 93860414 93860572 -27983284 + B2_Mm2 SINE B2 2 159 -36 8 1301 377 187 80 0 chr11 93860579 93860654 -27983202 + ID4_ SINE ID 1 81 -2 8 1301 206 180 40 0 chr11 93860875 93860925 -27982931 + CT-rich Low_complexity Low_complexity 4 55 0 8 1301 301 355 11 0 chr11 93860980 93861073 -27982783 - PB1D10 SINE Alu -22 95 2 8 1301 189 0 0 0 chr11 93861332 93861353 -27982503 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 8 1301 331 297 44 0 chr11 93861373 93861464 -27982392 - RSINE1 SINE B4 -22 143 49 8 1301 631 208 23 107 chr11 93861464 93861679 -27982177 + B3A SINE B2 1 197 -1 8 1301 692 169 17 4 chr11 93861685 93861815 -27982041 + B3A SINE B2 1 128 -65 8 1301 279 0 0 0 chr11 93861918 93861949 -27981907 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1301 222 328 0 0 chr11 93862021 93862079 -27981777 - RSINE1 SINE B4 -105 60 3 8 1301 242 179 23 0 chr11 93862127 93862178 -27981678 - B1F2 SINE Alu -52 65 9 8 1301 1390 75 27 0 chr11 93862204 93862390 -27981466 + B2_Mm1a SINE B2 1 191 -2 8 1301 255 200 0 0 chr11 93862401 93862446 -27981410 + PB1D9 SINE Alu 1 45 -75 8 1301 306 322 23 0 chr11 93862817 93862991 -27980865 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1301 233 321 23 0 chr11 93863139 93863270 -27980586 + (TG)n Simple_repeat Simple_repeat 1 134 0 8 1301 334 310 23 0 chr11 93863498 93863672 -27980184 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1301 232 284 12 58 chr11 93863702 93863788 -27980068 - B4A SINE B4 -7 285 204 8 1301 1133 200 19 10 chr11 93863859 93864066 -27979790 + B3 SINE B2 1 209 -7 8 1301 1224 244 48 26 chr11 93864082 93864393 -27979463 - MTE2a LTR MaLR -43 336 19 8 1301 444 297 7 33 chr11 93864393 93864546 -27979310 + B3 SINE B2 64 212 -4 8 1301 794 192 14 0 chr11 93864843 93864989 -27978867 + B1_Mus1 SINE Alu 1 148 0 8 1301 389 223 147 11 chr11 93865025 93865120 -27978736 - ID_B1 SINE B4 -26 198 91 8 1301 245 240 162 63 chr11 93865120 93865133 -27978723 - B1_Mus1 SINE Alu -26 119 1 8 1301 593 101 0 68 chr11 93865272 93865389 -27978467 - B1_Mur4 SINE Alu -1 149 41 8 1301 252 0 0 0 chr11 93865445 93865473 -27978383 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1301 1034 37 0 0 chr11 93865473 93865607 -27978249 - B1_Mus2 SINE Alu 0 147 14 8 1301 454 231 41 82 chr11 93865479 93865625 -27978231 - B4 SINE B4 -72 220 81 8 1301 560 250 140 0 chr11 93865672 93865836 -27978020 - B3 SINE B2 -29 187 1 8 1301 1153 129 5 36 chr11 93865862 93866055 -27977801 - B2_Mm2 SINE B2 -8 187 1 8 1301 507 226 15 22 chr11 93866060 93866196 -27977660 - B3A SINE B2 0 198 64 8 1301 1208 48 0 0 chr11 93866456 93866603 -27977253 - B1_Mus1 SINE Alu 0 148 2 8 1301 449 263 34 34 chr11 93866603 93866721 -27977135 - RSINE1 SINE B4 -45 120 3 8 1301 312 230 168 10 chr11 93867086 93867187 -27976669 + B3 SINE B2 97 213 -3 8 1301 582 165 59 25 chr11 93867473 93867591 -27976265 - B1_Mur1 SINE Alu -10 139 18 8 1301 244 300 108 108 chr11 93867591 93867630 -27976226 - B4 SINE B4 -76 216 60 8 1301 237 128 0 0 chr11 93867653 93867700 -27976156 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1301 243 210 191 27 chr11 93867855 93868002 -27975854 - L1MC5 LINE L1 -763 7198 7028 8 1301 374 0 22 0 chr11 93868198 93868244 -27975612 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1301 1088 85 0 0 chr11 93868268 93868409 -27975447 - B1_Mus2 SINE Alu -6 141 1 8 1301 1215 84 53 43 chr11 93868464 93868651 -27975205 - B2_Mm2 SINE B2 -5 190 2 8 1301 821 212 0 0 chr11 93868655 93868801 -27975055 - B1_Mus2 SINE Alu -1 146 1 8 1301 254 327 102 9 chr11 93868833 93868941 -27974915 - RSINE1 SINE B4 -4 161 44 8 1301 287 283 130 19 chr11 93868896 93869004 -27974852 - PB1D10 SINE Alu -21 128 9 8 1301 277 314 0 0 chr11 93868943 93869013 -27974843 - ID_B1 SINE B4 -74 150 81 8 1301 241 302 110 28 chr11 93870237 93870346 -27973510 + PB1D9 SINE Alu 2 119 -1 8 1301 290 345 108 33 chr11 93870436 93870556 -27973300 + RSINE1 SINE B4 1 129 -36 8 1301 261 0 0 0 chr11 93870623 93870652 -27973204 + (CCA)n Simple_repeat Simple_repeat 1 29 0 8 1301 481 333 14 0 chr11 93870879 93871026 -27972830 + B1F SINE Alu 1 149 0 8 1301 429 250 12 184 chr11 93871118 93871368 -27972488 + L1MA4 LINE L1 5702 5908 -392 8 1301 429 307 89 19 chr11 93871850 93872119 -27971737 - L2a LINE L2 -99 3327 3040 8 1301 618 294 225 32 chr11 93872157 93872727 -27971129 - L2a LINE L2 -467 2952 2273 8 1301 333 311 23 75 chr11 93872728 93872902 -27970954 + B4A SINE B4 2 166 -126 8 1301 302 273 62 13 chr11 93873047 93873157 -27970699 + PB1D10 SINE Alu 1 120 -7 8 1301 860 166 188 27 chr11 93873211 93873397 -27970459 + B3 SINE B2 1 216 0 8 1301 323 260 9 74 chr11 93873512 93873620 -27970236 + RSINE1 SINE B4 59 159 -6 8 1301 474 44 0 29 chr11 93873868 93873938 -27969918 + B1_Mur4 SINE Alu 76 143 -7 8 1301 210 304 12 37 chr11 93874061 93874143 -27969713 - ID4_ SINE ID -3 80 1 8 1301 49 52 0 0 chr11 93874416 93874493 -27969363 + AT_rich Low_complexity Low_complexity 1 77 0 8 1301 563 263 36 29 chr11 93874494 93874631 -27969225 - RSINE1 SINE B4 -26 139 2 8 1301 931 212 10 25 chr11 93874650 93874848 -27969008 - B3 SINE B2 -21 195 1 8 1301 489 218 86 104 chr11 93875553 93875590 -27968266 - B3 SINE B2 0 216 180 8 1301 1422 50 0 0 chr11 93875590 93875769 -27968087 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1301 489 218 86 104 chr11 93875769 93875786 -27968070 - B3 SINE B2 -37 179 163 8 1301 1431 59 0 0 chr11 93875786 93875965 -27967891 + (TG)n Simple_repeat Simple_repeat 1 180 -364 8 1301 1431 59 0 0 chr11 93875970 93876330 -27967526 + (TG)n Simple_repeat Simple_repeat 181 544 0 8 1301 489 218 86 104 chr11 93876330 93876487 -27967369 - B3 SINE B2 -59 157 2 8 1301 332 297 19 29 chr11 93876705 93876809 -27967047 - RSINE1 SINE B4 -15 150 48 8 1301 573 183 100 0 chr11 93877434 93877554 -27966302 - B1F SINE Alu -5 144 13 8 1301 1535 144 103 27 chr11 93877631 93877960 -27965896 - ORR1B1 LTR MaLR 0 394 41 8 1301 531 178 263 0 chr11 93878013 93878131 -27965725 + B1_Mur4 SINE Alu 2 150 0 8 1301 21 0 0 0 chr11 93878143 93878164 -27965692 + AT_rich Low_complexity Low_complexity 1 21 0 8 1301 276 236 285 26 chr11 93878327 93878479 -27965377 - B3A SINE B2 -10 206 16 8 1301 946 152 7 0 chr11 93878687 93878832 -27965024 - B1_Mus1 SINE Alu 0 148 3 8 1301 1010 116 14 0 chr11 93878960 93879107 -27964749 - B1_Mur3 SINE Alu 0 149 1 8 1301 189 121 0 0 chr11 93879150 93879183 -27964673 + (G)n Simple_repeat Simple_repeat 1 33 0 8 1301 594 260 238 0 chr11 93879265 93879488 -27964368 - B4 SINE B4 -14 278 3 8 1301 237 178 0 0 chr11 93879517 93879562 -27964294 + G-rich Low_complexity Low_complexity 1 45 0 8 1301 496 219 19 19 chr11 93879581 93879688 -27964168 - RSINE1 SINE B4 -29 136 30 8 1301 455 289 99 13 chr11 93879701 93879852 -27964004 - RSINE1 SINE B4 0 165 2 8 1301 219 36 0 0 chr11 93879946 93879974 -27963882 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1301 207 108 54 0 chr11 93879974 93880011 -27963845 + (TTG)n Simple_repeat Simple_repeat 2 40 0 8 1301 889 140 0 0 chr11 93880062 93880205 -27963651 - B1_Mur4 SINE Alu 0 150 8 8 1301 348 316 6 32 chr11 93880645 93880802 -27963054 - RSINE1 SINE B4 -11 154 2 8 1301 211 122 0 93 chr11 93881207 93881261 -27962595 + T-rich Low_complexity Low_complexity 5 53 0 8 1301 420 45 45 0 chr11 93881504 93881571 -27962285 + (TA)n Simple_repeat Simple_repeat 1 70 0 8 1301 313 319 28 49 chr11 93881612 93881754 -27962102 - RSINE1 SINE B4 -26 139 1 8 1301 25 31 0 0 chr11 93881759 93881791 -27962065 + AT_rich Low_complexity Low_complexity 1 32 0 8 1301 642 167 15 31 chr11 93881795 93881925 -27961931 - RSINE1 SINE B4 -29 136 9 8 1301 249 221 154 13 chr11 93882065 93882143 -27961713 - PB1D9 SINE Alu 0 120 32 8 1301 410 176 12 0 chr11 93882151 93882236 -27961620 + CT-rich Low_complexity Low_complexity 2 87 0 8 1301 277 251 47 0 chr11 93882406 93882502 -27961354 + B1F2 SINE Alu 43 142 -5 8 1301 348 148 0 0 chr11 93882504 93882565 -27961291 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 8 1301 500 77 0 13 chr11 93883057 93883136 -27960720 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 8 1301 847 146 0 0 chr11 93883168 93883298 -27960558 - B3 SINE B2 -86 130 1 8 1301 748 171 171 0 chr11 93883410 93883568 -27960288 - B3 SINE B2 -28 188 4 8 1301 510 254 0 9 chr11 93883572 93883687 -27960169 - PB1D9 SINE Alu -6 114 1 8 1301 1281 106 11 0 chr11 93883975 93884155 -27959701 + B2_Mm2 SINE B2 1 182 -13 8 1301 325 79 327 82 chr11 93884188 93884298 -27959558 + B2_Mm2 SINE B2 57 193 -2 9 1301 1228 41 0 0 chr11 93884762 93884909 -27958947 - B1_Mus2 SINE Alu 0 147 1 9 1301 1178 108 48 21 chr11 93885096 93885285 -27958571 + B2_Mm2 SINE B2 2 195 0 9 1301 763 70 0 26 chr11 93886388 93886505 -27957351 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 9 1301 1180 41 0 20 chr11 93887540 93887690 -27956166 + B1_Mus2 SINE Alu 1 147 0 9 1301 735 181 0 8 chr11 93887928 93888056 -27955800 - B1_Mur3 SINE Alu -2 147 21 9 1301 189 0 0 0 chr11 93888422 93888443 -27955413 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1301 537 199 12 2 chr11 93888696 93888836 -27955020 + L1MC2 LINE L1 5829 5970 -374 9 1301 298 282 98 42 chr11 93888947 93889060 -27954796 + PB1D7 SINE Alu 3 125 -2 9 1301 226 194 0 27 chr11 93889216 93889290 -27954566 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 9 1301 835 128 36 29 chr11 93889543 93889680 -27954176 + B1_Mus1 SINE Alu 1 138 -10 9 1301 261 0 0 0 chr11 93889680 93889709 -27954147 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1301 255 280 227 8 chr11 93889800 93889919 -27953937 - LTR82B Low_complexity ERVL -92 738 594 9 1301 1115 88 0 0 chr11 93889937 93890084 -27953772 - B1_Mus1 SINE Alu 0 148 2 9 1301 252 77 0 0 chr11 93890136 93890175 -27953681 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1301 1115 75 0 7 chr11 93890175 93890311 -27953545 - B1_Mus1 SINE Alu -11 137 2 9 1301 444 306 178 79 chr11 93890345 93890700 -27953156 - MLT1B LTR MaLR 0 390 1 9 1301 208 405 63 0 chr11 93890758 93890837 -27953019 - L2 LINE L2 -500 2919 2836 9 1301 706 209 22 0 chr11 93891005 93891144 -27952712 - B1_Mur1 SINE Alu -7 142 1 9 1301 330 276 71 71 chr11 93891201 93891369 -27952487 - MTEa LTR MaLR -14 365 198 9 1301 733 243 7 7 chr11 93891662 93891811 -27952045 - B1_Mur1 SINE Alu 0 149 1 9 1301 717 97 0 0 chr11 93891827 93891930 -27951926 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 9 1301 207 0 0 0 chr11 93891930 93891953 -27951903 + (CCTA)n Simple_repeat Simple_repeat 1 23 0 9 1301 816 199 7 7 chr11 93891953 93892100 -27951756 - B1_Mus1 SINE Alu -1 147 1 9 1301 408 315 0 70 chr11 93892106 93892263 -27951593 - B3A SINE B2 0 198 53 9 1301 295 225 178 11 chr11 93892274 93892364 -27951492 - B1F1 SINE Alu -1 148 44 9 1301 22 0 0 0 chr11 93892400 93892422 -27951434 + AT_rich Low_complexity Low_complexity 1 22 0 9 1301 660 37 0 0 chr11 93892452 93892533 -27951323 - B2_Mm2 SINE B2 -100 95 15 9 1301 332 302 111 12 chr11 93893087 93893258 -27950598 - L1ME3A LINE L1 -269 5904 5717 9 1301 1142 75 7 0 chr11 93893340 93893486 -27950370 + B1_Mus2 SINE Alu 1 147 0 9 1301 192 111 0 0 chr11 93893487 93893523 -27950333 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1301 528 200 105 56 chr11 93893813 93893956 -27949900 - B1_Mur4 SINE Alu 0 150 1 9 1301 265 222 59 20 chr11 93893963 93894064 -27949792 - L1ME3A LINE L1 -595 5569 5465 9 1301 1058 213 5 5 chr11 93894654 93894866 -27948990 - B3 SINE B2 -4 212 1 9 1301 503 250 63 14 chr11 93894922 93895064 -27948792 - B1F1 SINE Alu 0 149 1 9 1301 201 147 0 0 chr11 93895401 93895435 -27948421 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1301 373 274 150 0 chr11 93895464 93895577 -27948279 + RSINE1 SINE B4 3 132 -33 9 1301 21 0 0 0 chr11 93895612 93895633 -27948223 + AT_rich Low_complexity Low_complexity 1 21 0 9 1301 3232 71 27 23 chr11 93895702 93896176 -27947680 - L1_Mus3 LINE L1 -8 6630 6155 9 1301 519 170 0 0 chr11 93896271 93896371 -27947485 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1301 331 228 159 147 chr11 93896371 93896541 -27947315 - B3A SINE B2 -16 182 11 9 1301 188 109 60 45 chr11 93898320 93898387 -27945469 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 9 1301 225 83 0 0 chr11 93898447 93898483 -27945373 + (T)n Simple_repeat Simple_repeat 1 36 0 9 1301 21 0 0 0 chr11 93898491 93898512 -27945344 + AT_rich Low_complexity Low_complexity 1 21 0 9 1301 693 210 199 0 chr11 93899011 93899187 -27944669 - B3 SINE B2 -4 212 2 9 1301 536 198 54 9 chr11 93899386 93899498 -27944358 - B1_Mur1 SINE Alu -31 118 2 9 1301 867 157 21 0 chr11 93899568 93899708 -27944148 - B1_Mur4 SINE Alu -7 143 1 9 1301 33 94 0 0 chr11 93900270 93900366 -27943490 + AT_rich Low_complexity Low_complexity 1 96 0 9 1301 227 286 69 28 chr11 93901455 93901527 -27942329 + B1F SINE Alu 67 141 -8 9 1301 288 77 0 0 chr11 93901527 93901566 -27942290 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 9 1301 786 244 88 4 chr11 93901568 93901807 -27942049 - MTEa LTR MaLR -66 313 55 9 1301 872 212 104 16 chr11 93902071 93902253 -27941603 - B3 SINE B2 -13 203 6 9 1301 455 214 29 19 chr11 93902253 93902358 -27941498 - ID_B1 SINE B4 -6 218 113 9 1301 185 250 103 0 chr11 93903095 93903163 -27940693 + MIR SINE MIR 74 148 -114 9 1301 297 49 0 0 chr11 93903817 93903843 -27940013 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1301 980 86 50 0 chr11 93903843 93903983 -27939873 - B1_Mus2 SINE Alu 0 147 1 9 1301 297 49 0 0 chr11 93903983 93903997 -27939859 + (T)n Simple_repeat Simple_repeat 1 14 0 9 1301 226 367 104 40 chr11 93904118 93904243 -27939613 - RSINE1 SINE B4 -10 155 23 9 1301 221 140 0 74 chr11 93904263 93904317 -27939539 + T-rich Low_complexity Low_complexity 5 54 0 9 1301 219 36 0 0 chr11 93905879 93905907 -27937949 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1301 21 0 0 0 chr11 93906238 93906259 -27937597 + AT_rich Low_complexity Low_complexity 1 21 0 9 1301 31 26 0 0 chr11 93906346 93906384 -27937472 + AT_rich Low_complexity Low_complexity 1 38 0 9 1301 262 215 212 12 chr11 93906915 93906995 -27936861 - PB1D7 SINE Alu -1 119 24 9 1301 180 0 0 0 chr11 93907803 93907823 -27936033 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1301 668 228 8 0 chr11 93908694 93908821 -27935035 - RSINE1 SINE B4 -36 129 2 9 1301 418 234 56 0 chr11 93908830 93908937 -27934919 - ID_B1 SINE B4 -7 217 105 9 1301 358 330 10 0 chr11 93909294 93909397 -27934459 + PB1D10 SINE Alu 1 104 -13 9 1301 232 286 51 13 chr11 93909559 93909578 -27934278 - PB1D10 SINE Alu -10 107 27 9 1301 232 271 0 0 chr11 93909578 93909637 -27934219 - ID_B1 SINE B4 -58 166 108 9 1301 528 282 69 0 chr11 93909957 93910088 -27933768 + RSINE1 SINE B4 3 142 -23 9 1301 27 49 0 0 chr11 93910124 93910165 -27933691 + AT_rich Low_complexity Low_complexity 1 41 0 9 1301 2351 118 97 3 chr11 93910277 93910658 -27933198 - MTC LTR MaLR -4 417 1 9 1301 206 146 24 0 chr11 93910758 93910799 -27933057 + T-rich Low_complexity Low_complexity 6 47 0 9 1301 537 262 63 8 chr11 93910896 93911023 -27932833 - RSINE1 SINE B4 -29 136 3 9 1301 299 218 49 49 chr11 93911093 93911175 -27932681 - B3 SINE B2 -23 193 112 9 1301 527 236 9 0 chr11 93911206 93911312 -27932544 - PB1D7 SINE Alu -9 111 5 9 1301 685 230 7 45 chr11 93911819 93911974 -27931882 + B1_Mur2 SINE Alu 1 149 0 9 1301 750 278 39 10 chr11 93912047 93912254 -27931602 - ID_B1 SINE B4 -11 213 1 9 1301 180 0 0 0 chr11 93912320 93912340 -27931516 + (TTG)n Simple_repeat Simple_repeat 1 20 0 9 1301 392 301 32 0 chr11 93912350 93912443 -27931413 - B1F1 SINE Alu -53 96 1 9 1301 219 182 0 22 chr11 93913107 93913152 -27930704 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1301 531 191 54 9 chr11 93913673 93913784 -27930072 + PB1D9 SINE Alu 5 120 0 9 1301 519 200 94 16 chr11 93913801 93913928 -27929928 + B1_Mur4 SINE Alu 13 149 -1 9 1301 408 312 32 25 chr11 93913942 93914100 -27929756 + RSINE1 SINE B4 3 161 -4 9 1301 353 72 0 35 chr11 93915103 93915161 -27928695 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 9 1301 285 271 14 0 chr11 93915233 93915303 -27928553 - ID4_ SINE ID -10 73 3 9 1301 207 0 0 0 chr11 93915317 93915340 -27928516 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 9 1301 1102 82 0 27 chr11 93915340 93915490 -27928366 + B1_Mus2 SINE Alu 2 147 0 9 1301 487 195 47 23 chr11 93916928 93917047 -27926809 - B1F SINE Alu 0 149 18 9 1301 218 224 20 20 chr11 93917273 93917323 -27926533 - B1F1 SINE Alu -94 55 6 9 1301 492 18 0 0 chr11 93917366 93917423 -27926433 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1301 925 59 76 56 chr11 93917445 93917589 -27926267 + B1_Mus1 SINE Alu 1 147 -1 9 1301 947 213 18 58 chr11 93917665 93917889 -27925967 - B3 SINE B2 0 216 2 9 1301 531 297 0 7 chr11 93917918 93918067 -27925789 - B1_Mur1 SINE Alu 0 149 2 9 1301 1549 222 143 39 chr11 93918148 93918196 -27925660 - RLTR20B3 LTR ERVK -44 533 483 9 1301 303 49 0 0 chr11 93918196 93918237 -27925619 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1301 1549 222 143 39 chr11 93918237 93918648 -27925208 - RLTR20B3 LTR ERVK -95 482 28 9 1301 237 340 9 78 chr11 93918752 93918867 -27924989 - PB1D10 SINE Alu -10 107 1 9 1301 230 327 0 0 chr11 93918867 93918921 -27924935 - B4 SINE B4 -210 82 29 9 1301 552 252 102 37 chr11 93918985 93919313 -27924543 - L1M2 LINE L1 -517 5780 5427 9 1301 505 189 155 16 chr11 93919342 93919471 -27924385 - B1_Mus1 SINE Alu 0 148 2 9 1301 926 162 37 43 chr11 93919541 93919728 -27924128 - B2_Mm2 SINE B2 -8 187 2 9 1301 22 0 0 0 chr11 93919733 93919755 -27924101 + AT_rich Low_complexity Low_complexity 1 22 0 1 1301 198 158 0 0 chr11 93919930 93919952 -27923904 + T-rich Low_complexity Low_complexity 17 38 0 1 1301 1607 31 0 15 chr11 93919952 93920148 -27923708 - B2_Mm1t SINE B2 0 193 1 1 1301 198 158 0 0 chr11 93920148 93920163 -27923693 + T-rich Low_complexity Low_complexity 2 16 0 1 1301 313 286 29 0 chr11 93920163 93920233 -27923623 - ID_B1 SINE B4 -71 153 82 1 1301 25 0 0 0 chr11 93920565 93920590 -27923266 + AT_rich Low_complexity Low_complexity 1 25 0 1 1301 349 291 85 37 chr11 93920597 93920761 -27923095 + B4A SINE B4 3 174 -118 1 1301 1039 133 0 0 chr11 93920960 93921110 -27922746 - B1_Mur4 SINE Alu 0 150 1 1 1301 640 292 21 0 chr11 93921160 93921304 -27922552 - RSINE1 SINE B4 -11 154 8 1 1301 257 328 32 32 chr11 93921307 93921433 -27922423 - ID_B1 SINE B4 -19 205 80 1 1301 5108 32 0 0 chr11 93921983 93922577 -27921279 - L1Md_T LINE L1 0 6582 5989 1 1301 659 294 43 38 chr11 93922963 93923172 -27920684 + B4 SINE B4 83 292 0 1 1301 2848 124 86 14 chr11 93923235 93923726 -27920130 - RLTR11A LTR ERVK -2 526 1 1 1301 258 30 0 0 chr11 93923726 93923754 -27920102 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1301 788 87 0 45 chr11 93923751 93923907 -27919949 + (TTC)n Simple_repeat Simple_repeat 1 149 0 1 1301 418 167 315 0 chr11 93923922 93924030 -27919826 - B1_Mur2 SINE Alu -6 143 2 1 1301 271 0 51 0 chr11 93924274 93924313 -27919543 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 1 1301 725 200 26 46 chr11 93924319 93924471 -27919385 - B1_Mur3 SINE Alu 0 149 1 1 1301 943 209 71 5 chr11 93924482 93924679 -27919177 - B3 SINE B2 -2 214 5 1 1301 210 71 0 0 chr11 93924809 93924837 -27919019 + (TATAA)n Simple_repeat Simple_repeat 2 29 0 1 1301 315 65 0 0 chr11 93924842 93924888 -27918968 + (TTGG)n Simple_repeat Simple_repeat 3 48 0 1 1301 213 39 0 0 chr11 93924977 93925003 -27918853 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1301 306 318 9 61 chr11 93925003 93925117 -27918739 - B1_Mur1 SINE Alu -12 137 30 1 1301 351 250 54 0 chr11 93925110 93925202 -27918654 - PB1D10 SINE Alu -8 112 1 1 1301 1172 167 41 14 chr11 93925938 93926156 -27917700 + URR1A DNA MER1_type 1 224 -2 1 1301 2150 151 24 73 chr11 93926350 93926763 -27917093 - ORR1B1 LTR MaLR 0 394 2 1 1301 468 329 35 0 chr11 93927265 93927408 -27916448 + B1F SINE Alu 2 149 0 1 1301 256 338 12 0 chr11 93927494 93927574 -27916282 - ID4_ SINE ID -1 82 2 1 1301 265 235 29 14 chr11 93927586 93927655 -27916201 + CT-rich Low_complexity Low_complexity 2 71 0 1 1301 184 100 24 24 chr11 93927743 93927784 -27916072 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1 1301 435 181 7 59 chr11 93927785 93927920 -27915936 - RMER17C LTR ERVK -134 276 149 1 1301 1205 54 7 0 chr11 93927926 93928073 -27915783 - B1_Mus1 SINE Alu 0 148 1 1 1301 715 127 127 0 chr11 93928273 93928399 -27915457 + B1_Mus1 SINE Alu 1 142 -6 1 1301 440 345 19 51 chr11 93928450 93928604 -27915252 - RSINE1 SINE B4 0 165 17 1 1301 1196 185 17 39 chr11 93928604 93928736 -27915120 - URR1A DNA MER1_type 0 226 94 1 1301 1361 68 51 0 chr11 93928736 93928913 -27914943 + B2_Mm2 SINE B2 2 187 -8 1 1301 1196 185 17 39 chr11 93928913 93929011 -27914845 - URR1A DNA MER1_type -133 93 1 1 1301 24 0 0 0 chr11 93929534 93929558 -27914298 + AT_rich Low_complexity Low_complexity 1 24 0 1 1301 311 291 109 25 chr11 93929677 93929793 -27914063 - PB1D10 SINE Alu -21 128 6 1 1301 552 215 15 69 chr11 93929810 93929940 -27913916 - ID_B1 SINE B4 0 224 102 1 1301 860 298 58 31 chr11 93930568 93930862 -27912994 - MLT1A1 LTR MaLR -1 407 106 1 1301 443 216 0 0 chr11 93932183 93932257 -27911599 + ID_B1 SINE B4 135 208 -16 1 1301 353 306 91 0 chr11 93932286 93932407 -27911449 + MIR SINE MIR 20 151 -111 1 1301 602 160 94 23 chr11 93933747 93933875 -27909981 + B1_Mur4 SINE Alu 5 141 -9 1 1301 200 34 0 33 chr11 93933875 93933905 -27909951 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1301 337 118 44 0 chr11 93933908 93933976 -27909880 + GA-rich Low_complexity Low_complexity 2 72 0 1 1301 350 260 87 0 chr11 93934456 93934560 -27909296 + PB1D9 SINE Alu 1 113 -7 1 1301 724 245 0 0 chr11 93934570 93934709 -27909147 + B1_Mur1 SINE Alu 7 145 -4 1 1301 592 234 156 0 chr11 93934715 93934856 -27909000 + B3 SINE B2 4 166 -50 1 1301 583 255 11 96 chr11 93935128 93935306 -27908550 + RSINE1 SINE B4 3 165 0 1 1301 27 0 0 0 chr11 93935396 93935423 -27908433 + AT_rich Low_complexity Low_complexity 1 27 0 1 1301 586 238 106 5 chr11 93935740 93935947 -27907909 - Lx8 LINE L1 -357 7116 6889 1 1301 226 224 0 20 chr11 93936319 93936369 -27907487 + MTEb LTR MaLR 299 347 -32 1 1301 434 274 17 26 chr11 93936369 93936485 -27907371 - MTE2b LTR MaLR -82 297 183 1 1301 180 97 0 0 chr11 93936922 93936953 -27906903 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1 1301 1144 62 7 0 chr11 93936956 93937101 -27906755 - B1_Mus1 SINE Alu -1 147 2 1 1301 640 228 69 6 chr11 93937135 93937209 -27906647 + ID SINE ID 2 85 -139 1 1301 309 330 79 10 chr11 93937209 93937310 -27906546 + PB1D10 SINE Alu 1 108 -9 1 1301 794 112 104 7 chr11 93937601 93937736 -27906120 - B1_Mur4 SINE Alu -2 148 1 1 1301 222 317 16 0 chr11 93937942 93938017 -27905839 - PB1D10 SINE Alu -44 76 1 1 1301 534 149 29 15 chr11 93938024 93938090 -27905766 + polypyrimidine Low_complexity Low_complexity 73 140 0 1 1301 1015 102 11 17 chr11 93938090 93938270 -27905586 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 1301 534 149 29 15 chr11 93938270 93938339 -27905517 + polypyrimidine Low_complexity Low_complexity 3 72 0 1 1301 211 271 0 63 chr11 93938340 93938368 -27905488 + T-rich Low_complexity Low_complexity 33 60 0 1 1301 809 128 177 0 chr11 93938368 93938532 -27905324 - B2_Mm2 SINE B2 -1 194 2 1 1301 211 271 0 63 chr11 93938532 93938566 -27905290 + T-rich Low_complexity Low_complexity 2 32 0 1 1301 422 206 145 38 chr11 93938575 93938706 -27905150 - RMER10B LTR ERVL -59 339 195 1 1301 21 36 0 0 chr11 93940349 93940377 -27903479 + AT_rich Low_complexity Low_complexity 1 28 0 1 1301 27 29 0 0 chr11 93940967 93941001 -27902855 + AT_rich Low_complexity Low_complexity 1 34 0 1 1301 219 139 0 0 chr11 93941017 93941053 -27902803 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1301 672 186 85 0 chr11 93941072 93941201 -27902655 - B1_Mus1 SINE Alu -7 141 2 1 1301 369 62 0 0 chr11 93941336 93941384 -27902472 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1301 1419 53 37 21 chr11 93941629 93941820 -27902036 + B2_Mm2 SINE B2 2 195 0 1 1301 237 311 23 70 chr11 93942322 93942450 -27901406 + PB1 SINE Alu 1 122 -5 1 1301 1050 92 0 7 chr11 93943442 93943584 -27900272 - B1_Mus1 SINE Alu -7 141 1 1 1301 291 125 0 82 chr11 93944565 93944626 -27899230 + B3 SINE B2 2 57 -159 1 1301 210 71 0 0 chr11 93944690 93944718 -27899138 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1301 463 250 0 0 chr11 93944763 93944863 -27898993 + B3A SINE B2 2 101 -97 1 1301 251 291 87 0 chr11 93944990 93945093 -27898763 - B1F SINE Alu -1 148 37 1 1301 24 32 0 0 chr11 93945221 93945252 -27898604 + AT_rich Low_complexity Low_complexity 1 31 0 1 1301 576 0 0 0 chr11 93945401 93945465 -27898391 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 1 1301 831 53 9 0 chr11 93945660 93945773 -27898083 - B1_Mus1 SINE Alu -1 147 34 1 1301 21 0 0 0 chr11 93945786 93945807 -27898049 + AT_rich Low_complexity Low_complexity 1 21 0 1 1301 21 36 0 0 chr11 93945850 93945878 -27897978 + AT_rich Low_complexity Low_complexity 1 28 0 1 1301 746 272 6 0 chr11 93945881 93946043 -27897813 + RSINE1 SINE B4 3 165 0 1 1301 1311 75 40 0 chr11 93946061 93946234 -27897622 + B2_Mm2 SINE B2 2 181 -14 1 1301 324 104 24 11 chr11 93946262 93946326 -27897530 + B2_Mm2 SINE B2 47 109 -107 1 1301 180 0 0 0 chr11 93946338 93946358 -27897498 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 1 1301 22 0 0 0 chr11 93946358 93946380 -27897476 + AT_rich Low_complexity Low_complexity 1 22 0 1 1301 735 336 44 4 chr11 93946576 93946827 -27897029 + MTD LTR MaLR 31 291 -128 1 1301 323 212 259 26 chr11 93946986 93947102 -27896754 - B1_Mus1 SINE Alu 0 148 6 1 1301 181 53 51 26 chr11 93948255 93948294 -27895562 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1301 1198 55 7 0 chr11 93948294 93948440 -27895416 - B1_Mm SINE Alu 0 147 1 1 1301 4088 81 26 0 chr11 93948579 93949369 -27894487 - Lx LINE L1 -528 6126 5314 1 1301 3261 101 23 14 chr11 93949380 93949863 -27893993 + Lx LINE L1 6163 6649 -5 1 1301 1147 76 7 0 chr11 93950078 93950223 -27893633 - B1_Mus2 SINE Alu 0 147 2 1 1301 189 0 0 0 chr11 93950375 93950396 -27893460 + (CTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1301 337 279 115 0 chr11 93950403 93950507 -27893349 - PB1D10 SINE Alu 0 117 2 1 1301 331 330 10 0 chr11 93950537 93950634 -27893222 + PB1 SINE Alu 19 116 -11 1 1301 189 0 0 0 chr11 93950889 93950910 -27892946 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1301 350 312 43 7 chr11 93952098 93952237 -27891619 + B1F SINE Alu 1 144 -5 1 1301 326 224 45 0 chr11 93952370 93952437 -27891419 + PB1D7 SINE Alu 41 110 -10 1 1301 237 65 0 0 chr11 93952437 93952468 -27891388 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1 1301 333 294 101 0 chr11 93952506 93952615 -27891241 + RSINE1 SINE B4 3 122 -43 1 1301 437 185 0 11 chr11 93952594 93952687 -27891169 + B3 SINE B2 124 215 -1 1 1301 200 111 28 0 chr11 93952949 93952985 -27890871 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1301 268 209 66 19 chr11 93953862 93953974 -27889882 - PB1D10 SINE Alu 0 149 34 1 1301 680 12 0 0 chr11 93954300 93954384 -27889472 + L1Md_T LINE L1 6499 6582 0 1 1301 264 202 255 19 chr11 93954523 93954629 -27889227 - L1ME1 LINE L1 -3 6176 6046 1 1301 610 123 237 0 chr11 93955202 93955316 -27888540 + B1_Mur4 SINE Alu 3 143 -7 1 1301 490 202 152 23 chr11 93955614 93955746 -27888110 + B1_Mur4 SINE Alu 1 149 -1 1 1301 23 33 0 0 chr11 93955747 93955777 -27888079 + AT_rich Low_complexity Low_complexity 1 30 0 1 1301 952 140 0 39 chr11 93955965 93956121 -27887735 - B1_Mur4 SINE Alu 0 150 1 1 1301 447 212 273 0 chr11 93956138 93956303 -27887553 - B3 SINE B2 -2 214 5 1 1301 977 108 43 0 chr11 93956327 93956466 -27887390 - B1_Mus2 SINE Alu 0 147 3 1 1301 386 258 28 85 chr11 93956558 93956664 -27887192 - RSINE1 SINE B4 -53 112 13 1 1301 390 274 0 45 chr11 93957169 93957280 -27886576 + PB1D10 SINE Alu 2 107 -10 1 1301 422 288 36 73 chr11 93957573 93957738 -27886118 - RSINE1 SINE B4 0 165 7 1 1301 414 357 19 6 chr11 93957940 93958098 -27885758 - RSINE1 SINE B4 -2 163 4 1 1301 718 89 205 24 chr11 93958241 93958368 -27885488 - B1_Mur4 SINE Alu 0 150 1 1 1301 305 0 50 0 chr11 93958488 93958528 -27885328 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1301 42 0 0 0 chr11 93959859 93959901 -27883955 + AT_rich Low_complexity Low_complexity 1 42 0 1 1301 558 219 86 14 chr11 93960522 93960661 -27883195 + B1F SINE Alu 1 149 0 1 1301 221 265 0 20 chr11 93960852 93960902 -27882954 + PB1D9 SINE Alu 1 49 -71 1 1301 218 282 25 13 chr11 93961210 93961289 -27882567 + CT-rich Low_complexity Low_complexity 2 81 0 1 1301 180 0 0 0 chr11 93961534 93961554 -27882302 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1301 669 158 26 0 chr11 93961555 93961669 -27882187 - B2_Mm2 SINE B2 -77 118 2 1 1301 916 218 274 37 chr11 93961782 93962078 -27881778 - ORR1D2 LTR MaLR -4 366 1 1 1301 1078 43 57 7 chr11 93962099 93962239 -27881617 - B1_Mus1 SINE Alu 0 148 2 1 1301 1686 217 75 96 chr11 93962530 93963105 -27880751 - RLTR20B1 LTR ERVK 0 563 1 1 1301 679 292 59 40 chr11 93963801 93964065 -27879791 - B4A SINE B4 -12 280 2 1 1301 926 169 0 7 chr11 93964150 93964299 -27879557 - B1_Mur3 SINE Alu 0 149 2 1 1301 547 267 26 0 chr11 93964322 93964438 -27879418 - B1_Mur1 SINE Alu -29 120 2 1 1301 851 145 194 38 chr11 93964461 93964647 -27879209 - B3 SINE B2 0 216 2 1 1301 1056 36 64 14 chr11 93965272 93965412 -27878444 + B1_Mm SINE Alu 1 147 0 1 1301 302 91 18 0 chr11 93965452 93965507 -27878349 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1 1301 813 49 0 0 chr11 93965515 93965617 -27878239 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 1 1301 530 305 51 51 chr11 93965667 93965864 -27877992 - B3A SINE B2 -1 197 1 1 1301 2099 144 0 6 chr11 93966273 93966601 -27877255 - ORR1A3 LTR MaLR 0 326 1 1 1301 948 140 7 0 chr11 93967049 93967192 -27876664 + B1_Mur4 SINE Alu 1 144 -6 1 1301 272 275 29 14 chr11 93967474 93967544 -27876312 - ID4_ SINE ID -11 72 2 1 1301 643 243 14 0 chr11 93967614 93967754 -27876102 - B1_Mur1 SINE Alu -2 147 6 1 1301 201 275 43 0 chr11 93967779 93967848 -27876008 + L3 LINE CR1 4400 4471 -18 1 1301 219 109 64 21 chr11 93968262 93968309 -27875547 + T-rich Low_complexity Low_complexity 2 50 0 1 1301 695 148 82 0 chr11 93968375 93968497 -27875359 - B1_Mur2 SINE Alu -6 143 12 1 1301 428 227 24 2 chr11 93969111 93969209 -27874647 - PB1D7 SINE Alu -10 110 1 1 1301 783 164 16 0 chr11 93969427 93969555 -27874301 - B3 SINE B2 -86 130 1 1 1301 668 194 139 0 chr11 93969604 93969733 -27874123 + B1_Mus2 SINE Alu 1 147 0 1 1301 363 125 62 0 chr11 93970784 93970848 -27873008 - PB1D9 SINE Alu -13 107 40 1 1301 618 142 0 33 chr11 93970848 93971030 -27872826 + CT-rich Low_complexity Low_complexity 3 178 0 1 1301 750 83 0 135 chr11 93971040 93971248 -27872608 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 1 1301 411 116 0 99 chr11 93971251 93971443 -27872413 + CT-rich Low_complexity Low_complexity 3 175 0 1 1301 253 264 13 40 chr11 93971443 93971518 -27872338 - B4 SINE B4 -148 144 72 1 1301 837 206 51 66 chr11 93971713 93971910 -27871946 + B3 SINE B2 6 199 -17 1 1301 711 102 9 0 chr11 93971984 93972092 -27871764 + B1_Mus1 SINE Alu 2 110 -38 1 1301 1529 33 16 6 chr11 93972248 93972431 -27871425 + B2_Mm2 SINE B2 1 185 -10 1 1301 417 20 0 0 chr11 93972435 93972485 -27871371 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1301 522 29 0 0 chr11 93972565 93972634 -27871222 - B2_Mm2 SINE B2 -94 101 33 1 1301 308 344 0 0 chr11 93973089 93973179 -27870677 + ID_B1 SINE B4 105 194 -30 1 1301 468 0 0 0 chr11 93973184 93973236 -27870620 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1301 189 0 0 0 chr11 93974747 93974768 -27869088 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1301 247 227 0 0 chr11 93975929 93975973 -27867883 + ID_B1 SINE B4 148 191 -33 1 1301 345 347 32 0 chr11 93975979 93976103 -27867753 - B1F SINE Alu -16 133 6 1 1301 831 21 0 0 chr11 93976103 93976200 -27867656 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 1301 789 266 57 74 chr11 93976210 93976507 -27867349 - B4A SINE B4 0 292 1 1 1301 326 232 0 0 chr11 93976944 93977013 -27866843 - ID4 SINE ID -13 70 2 1 1301 1574 62 0 0 chr11 93977185 93977377 -27866479 - B2_Mm1t SINE B2 -1 192 1 1 1301 22 35 0 0 chr11 93977437 93977466 -27866390 + AT_rich Low_complexity Low_complexity 1 29 0 1 1301 285 241 168 9 chr11 93977468 93977581 -27866275 - ORR1D2 LTR MaLR -2 368 238 1 1301 198 0 0 0 chr11 93977679 93977701 -27866155 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1301 423 272 0 34 chr11 93977701 93977819 -27866037 - B1_Mur1 SINE Alu -15 134 21 1 1301 276 286 81 10 chr11 93977847 93977946 -27865910 - PB1D7 SINE Alu -7 113 8 1 162 500 174 101 0 chr11 93978621 93978730 -27865126 - B1_Mur2 SINE Alu -5 144 25 1 1302 1029 181 322 9 chr11 93979726 93980013 -27863843 - ORR1B2 LTR MaLR 0 384 1 1 1302 422 205 167 32 chr11 93980847 93980973 -27862883 + B1_Mur2 SINE Alu 7 149 0 1 1302 512 244 36 29 chr11 93981193 93981332 -27862524 - B1_Mus2 SINE Alu -2 145 6 1 1302 732 250 96 5 chr11 93981363 93981560 -27862296 + B3 SINE B2 1 215 -1 1 1302 998 136 43 48 chr11 93981587 93981773 -27862083 + B2_Mm2 SINE B2 1 185 -10 1 1302 765 186 70 21 chr11 93981776 93981919 -27861937 + B1_Mur4 SINE Alu 1 150 0 1 1302 186 71 0 0 chr11 93981920 93981948 -27861908 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1302 1336 194 147 129 chr11 93982424 93983123 -27860733 + RMER6D LTR ERVK 4 715 -5 1 1302 2082 140 30 14 chr11 93983262 93983632 -27860224 + ORR1B1 LTR MaLR 19 394 0 1 1302 420 20 0 0 chr11 93983677 93983726 -27860130 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1302 752 176 0 57 chr11 93983728 93983885 -27859971 - B3 SINE B2 -68 148 1 1 1302 269 299 13 0 chr11 93986492 93986569 -27857287 + MADE2 DNA Mariner 3 80 0 1 1302 957 94 65 7 chr11 93987547 93987686 -27856170 + B1_Mm SINE Alu 1 147 0 1 1302 980 89 0 43 chr11 93987710 93987850 -27856006 + B1_Mus2 SINE Alu 1 134 -13 1 1302 288 0 0 0 chr11 93987850 93987882 -27855974 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1302 1113 86 19 0 chr11 93987891 93988053 -27855803 + B2_Mm2 SINE B2 3 167 -28 1 1302 305 358 0 0 chr11 93988381 93988462 -27855394 + RSINE1 SINE B4 55 135 -30 1 1302 207 114 0 0 chr11 93988462 93988497 -27855359 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1302 182 37 37 0 chr11 93988559 93988586 -27855270 + (TCC)n Simple_repeat Simple_repeat 2 29 0 1 1302 344 269 13 0 chr11 93988586 93988664 -27855192 - PB1D9 SINE Alu -40 80 2 1 1302 3635 27 67 5 chr11 93988739 93989186 -27854670 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1302 630 26 0 0 chr11 93992728 93992804 -27851052 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1302 342 289 32 57 chr11 93993672 93993830 -27850026 - MER20 DNA MER1_type -62 157 4 1 1302 284 281 58 15 chr11 93994843 93994980 -27848876 - L2 LINE L2 -834 2585 2443 1 1302 29 0 0 0 chr11 93995457 93995486 -27848370 + GC_rich Low_complexity Low_complexity 1 29 0 1 1302 315 253 21 42 chr11 93996491 93996586 -27847270 + PB1D10 SINE Alu 20 112 -5 1 1302 286 269 113 54 chr11 93997303 93997488 -27846368 + MIRc SINE MIR 73 268 0 1 1302 212 144 0 65 chr11 93997936 93997982 -27845874 + MIRm SINE MIR 104 152 -124 1 1302 219 143 0 0 chr11 93997950 93997985 -27845871 + MIRc SINE MIR 118 152 -116 1 1302 225 237 158 0 chr11 93998864 93998940 -27844916 + 4.5SRNA scRNA scRNA 1 88 -6 1 1302 428 181 64 0 chr11 93998897 93998991 -27844865 + B1_Mur1 SINE Alu 47 146 -3 1 1302 255 31 0 0 chr11 93999467 93999499 -27844357 + (CCCTG)n Simple_repeat Simple_repeat 4 35 0 1 1302 728 210 191 11 chr11 94000721 94000909 -27842947 + ID_B1 SINE B4 2 223 -1 1 1302 899 51 0 0 chr11 94000912 94001029 -27842827 + B1_Mm SINE Alu 31 147 0 2 1302 280 362 37 21 chr11 94001185 94001374 -27842482 - L1ME3B LINE L1 -320 5920 5729 3 1302 746 151 7 0 chr11 94001542 94001681 -27842175 + CT-rich Low_complexity Low_complexity 3 142 0 4 1302 254 310 0 0 chr11 94002211 94002282 -27841574 - ID4_ SINE ID -2 81 11 5 1302 431 301 22 8 chr11 94002275 94002294 -27841562 - B1F SINE Alu -12 137 47 6 1302 433 269 0 0 chr11 94002294 94002402 -27841454 - ID_B1 SINE B4 -27 197 90 7 1302 318 132 0 0 chr11 94002697 94002750 -27841106 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 8 1302 208 354 114 12 chr11 94003025 94003191 -27840665 + L2a LINE L2 2396 2578 -841 9 1302 180 70 45 23 chr11 94003233 94003277 -27840579 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 1 1302 502 263 35 111 chr11 94003352 94003452 -27840404 - B3A SINE B2 -38 160 57 1 1302 1222 55 0 0 chr11 94003452 94003597 -27840259 + B1_Mus2 SINE Alu 3 147 0 1 1302 502 263 35 111 chr11 94003597 94003667 -27840189 - B3A SINE B2 -142 56 3 1 1302 250 352 77 65 chr11 94003704 94003859 -27839997 + L2a LINE L2 2745 2901 -518 9 1302 466 67 13 13 chr11 94003863 94003939 -27839917 + (TTG)n Simple_repeat Simple_repeat 3 78 0 1 1302 342 222 12 0 chr11 94004119 94004200 -27839656 + L1MC3 LINE L1 6697 6778 -1007 1 1302 1556 209 76 47 chr11 94004199 94004606 -27839250 + Lx5 LINE L1 6632 7050 0 1 1302 684 115 0 0 chr11 94004674 94004778 -27839078 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 1 1302 251 268 72 0 chr11 94004838 94004935 -27838921 + L1MC3 LINE L1 6958 7061 -724 1 1302 252 358 45 9 chr11 94005006 94005116 -27838740 + L1MC3 LINE L1 7272 7385 -400 1 1302 623 259 7 14 chr11 94005141 94005282 -27838574 - ID_B1 SINE B4 -1 223 84 1 1302 416 292 48 71 chr11 94005282 94005492 -27838364 + L1MC3 LINE L1 7388 7592 -193 1 1302 399 295 48 0 chr11 94005534 94005639 -27838217 + PB1D10 SINE Alu 5 114 -3 1 1302 361 318 9 0 chr11 94005794 94005901 -27837955 + PB1D10 SINE Alu 5 112 -5 1 1302 320 327 158 5 chr11 94006121 94006342 -27837514 + L2a LINE L2 3172 3426 0 9 1302 761 168 27 20 chr11 94008675 94008821 -27835035 - B1_Mus1 SINE Alu 0 148 2 2 1302 877 204 0 0 chr11 94009062 94009204 -27834652 + B1_Mur3 SINE Alu 2 143 -6 2 1302 198 103 0 0 chr11 94009204 94009233 -27834623 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1302 270 287 18 44 chr11 94009360 94009473 -27834383 - B1F SINE Alu 0 149 40 2 1302 315 0 0 0 chr11 94009528 94009563 -27834293 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1302 216 298 18 0 chr11 94009601 94009658 -27834198 + RSINE1 SINE B4 90 147 -18 2 1302 671 294 21 6 chr11 94009787 94009987 -27833869 - ID_B1 SINE B4 0 224 20 2 1302 234 0 0 0 chr11 94010040 94010066 -27833790 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1302 444 336 98 48 chr11 94011129 94011473 -27832383 + MLT1H1 LTR MaLR 27 398 -193 2 1302 529 348 56 7 chr11 94011568 94011837 -27832019 - L2c LINE L2 -51 3336 3055 2 1302 190 301 75 0 chr11 94013235 94013341 -27830515 - MIRm SINE MIR -125 151 38 3 1302 203 125 25 0 chr11 94013757 94013797 -27830059 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1302 221 252 0 32 chr11 94013866 94013989 -27829867 + (CATA)n Simple_repeat Simple_repeat 4 122 0 3 1302 546 102 235 0 chr11 94014170 94014268 -27829588 + URR1A DNA MER1_type 3 123 -103 3 1302 1306 108 37 21 chr11 94014268 94014458 -27829398 + B2_Mm2 SINE B2 1 193 -2 3 1302 207 0 0 0 chr11 94014523 94014546 -27829310 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1302 782 70 9 0 chr11 94014548 94014662 -27829194 + URR1A DNA MER1_type 111 225 -1 3 1302 510 219 53 0 chr11 94014793 94014907 -27828949 + ID_B1 SINE B4 82 201 -23 3 1302 422 224 108 31 chr11 94014803 94014932 -27828924 + B1F SINE Alu 11 149 0 3 1302 1209 68 0 0 chr11 94015133 94015280 -27828576 - B1_Mm SINE Alu 0 147 1 3 1302 198 267 274 10 chr11 94015327 94015429 -27828427 + MER5A DNA MER1_type 31 159 -30 3 1302 243 218 18 0 chr11 94015745 94015800 -27828056 - PB1 SINE Alu -25 102 47 4 1302 312 27 0 0 chr11 94015842 94015879 -27827977 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 4 1302 647 250 66 0 chr11 94015903 94016039 -27827817 - B1F1 SINE Alu -2 147 3 4 1302 382 92 308 68 chr11 94016053 94016170 -27827686 - B2_Mm2 SINE B2 -4 191 47 4 1302 1296 87 35 0 chr11 94016240 94016412 -27827444 - B2_Mm1t SINE B2 -14 179 2 4 1302 344 345 20 33 chr11 94016909 94017062 -27826794 + RSINE1 SINE B4 4 154 -11 4 1302 1052 204 65 0 chr11 94017071 94017272 -27826584 - B3 SINE B2 -2 214 1 4 1302 1067 115 0 26 chr11 94017442 94017594 -27826262 + B1_Mus1 SINE Alu 1 148 0 4 1302 309 327 5 12 chr11 94017603 94017699 -27826157 + PB1D10 SINE Alu 1 99 -50 4 1302 660 249 112 24 chr11 94017759 94017965 -27825891 + B4 SINE B4 5 228 -64 4 1302 696 225 23 0 chr11 94019197 94019326 -27824530 + B1F SINE Alu 1 132 -17 5 1302 1176 65 0 0 chr11 94019330 94019484 -27824372 + (GAAAA)n Simple_repeat Simple_repeat 2 155 0 5 1302 1292 34 0 0 chr11 94019485 94019633 -27824223 + B1_Mus1 SINE Alu 1 148 0 5 1302 183 284 28 69 chr11 94019669 94019741 -27824115 - MIRb SINE MIR -80 188 120 5 1302 417 262 97 0 chr11 94021278 94021381 -27822475 + PB1D10 SINE Alu 1 113 -4 5 1302 768 251 12 45 chr11 94023095 94023316 -27820540 - ID_B1 SINE B4 -49 243 24 5 1302 734 60 0 10 chr11 94023872 94023973 -27819883 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 5 1302 242 39 77 0 chr11 94023973 94024025 -27819831 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 1302 1107 74 0 0 chr11 94024027 94024162 -27819694 - B1_Mus1 SINE Alu -13 135 1 5 1302 233 315 39 23 chr11 94024869 94024999 -27818857 - MIRb SINE MIR -22 246 115 5 1302 441 305 0 119 chr11 94025498 94025658 -27818198 + RSINE1 SINE B4 8 148 -17 6 1302 672 215 122 30 chr11 94025732 94025929 -27817927 + ID_B1 SINE B4 7 221 -3 6 1302 732 141 41 0 chr11 94026014 94026135 -27817721 - B1_Mus2 SINE Alu -21 126 1 6 1302 186 322 40 61 chr11 94026427 94026526 -27817330 + MIR SINE MIR 52 148 -114 6 1302 604 267 14 0 chr11 94026672 94026818 -27817038 + B1F SINE Alu 2 149 0 6 1302 377 193 0 22 chr11 94026826 94026916 -27816940 + B4 SINE B4 1 88 -204 6 1302 638 25 12 0 chr11 94027061 94027141 -27816715 + (GA)n Simple_repeat Simple_repeat 2 82 0 6 1302 513 248 7 72 chr11 94027435 94027574 -27816282 + ID_B1 SINE B4 39 168 -56 6 1302 262 260 18 80 chr11 94027507 94027620 -27816236 + B1_Mus2 SINE Alu 21 126 -21 6 1302 822 243 14 59 chr11 94028230 94028449 -27815407 + ID_B1 SINE B4 2 210 -14 6 1302 216 317 12 12 chr11 94028668 94028751 -27815105 - MIR SINE MIR -61 147 65 7 1302 335 310 69 17 chr11 94029097 94029271 -27814585 + Charlie5 DNA MER1_type 2395 2577 -47 7 1302 386 267 88 7 chr11 94030030 94030166 -27813690 + B4 SINE B4 77 223 -69 7 1302 663 152 136 0 chr11 94030044 94030169 -27813687 + B1_Mur4 SINE Alu 9 150 0 7 1302 1120 75 7 0 chr11 94030466 94030612 -27813244 + B1_Mus1 SINE Alu 2 148 0 7 1302 707 206 6 0 chr11 94030625 94030785 -27813071 + GA-rich Low_complexity Low_complexity 2 162 0 7 1302 528 285 15 0 chr11 94031298 94031428 -27812428 + ID_B1 SINE B4 90 221 -3 7 1302 783 83 0 0 chr11 94031566 94031674 -27812182 + (CATAG)n Simple_repeat Simple_repeat 3 110 0 7 1302 234 286 176 0 chr11 94031830 94031921 -27811935 + MIRc SINE MIR 112 218 -50 7 1302 346 285 50 65 chr11 94032067 94032206 -27811650 - B1F SINE Alu 0 149 13 7 1302 576 160 0 62 chr11 94032224 94032337 -27811519 - B1_Mur2 SINE Alu -2 147 42 8 1302 1138 163 0 0 chr11 94032376 94032554 -27811302 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 8 1302 1098 151 0 18 chr11 94032565 94032788 -27811068 + (TCTCTG)n Simple_repeat Simple_repeat 1 218 0 8 1302 219 232 17 51 chr11 94032788 94032847 -27811009 - B4 SINE B4 -153 139 83 8 1302 193 288 0 85 chr11 94033974 94034052 -27809804 + MIRm SINE MIR 61 138 -138 8 1302 480 18 0 0 chr11 94034330 94034387 -27809469 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1302 188 229 0 0 chr11 94034639 94034674 -27809182 + MIR SINE MIR 116 150 -58 8 1302 252 291 196 18 chr11 94035079 94035191 -27808665 + Charlie19a DNA Charlie 47 178 -208 8 1302 249 235 0 0 chr11 94035382 94035467 -27808389 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1302 927 159 0 0 chr11 94035478 94035818 -27808038 + (TG)n Simple_repeat Simple_repeat 1 340 0 8 1302 423 248 88 0 chr11 94035870 94035983 -27807873 + PB1 SINE Alu 3 125 -2 8 1302 375 279 99 15 chr11 94036018 94036037 -27807819 + B1F SINE Alu 7 147 -1 8 1302 455 211 81 18 chr11 94036037 94036148 -27807708 + ID_B1 SINE B4 107 224 0 8 1302 321 269 0 0 chr11 94036189 94036267 -27807589 + ID2 SINE ID 2 79 -4 9 1302 521 230 15 19 chr11 94037486 94037617 -27806239 - B1F SINE Alu -7 143 6 9 1302 228 149 0 0 chr11 94037745 94037792 -27806064 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1302 1071 64 0 0 chr11 94037812 94037953 -27805903 - B1_Mm SINE Alu 0 147 7 9 1302 670 63 21 0 chr11 94038117 94038212 -27805644 - B1_Mus2 SINE Alu 0 147 51 9 1302 288 266 35 41 chr11 94038225 94038370 -27805486 - L1M5 LINE L1 -367 5817 5674 9 1302 237 266 86 16 chr11 94038371 94038558 -27805298 + RMER17D2 LTR ERVK 231 430 -379 9 1302 192 182 0 0 chr11 94038789 94038833 -27805023 + A-rich Low_complexity Low_complexity 1 44 0 9 1302 285 0 21 43 chr11 94038881 94038928 -27804928 + (TAA)n Simple_repeat Simple_repeat 3 48 0 9 1302 1148 290 14 0 chr11 94038929 94039226 -27804630 - Lx7 LINE L1 -360 7336 7036 9 1302 411 210 14 53 chr11 94039228 94039353 -27804503 - PB1D10 SINE Alu -4 145 28 1 1302 300 170 0 0 chr11 94039354 94039407 -27804449 - L1M5 LINE L1 -572 5607 5555 9 1302 251 165 11 34 chr11 94040112 94040200 -27803656 + (CA)n Simple_repeat Simple_repeat 2 87 0 1 1302 324 150 38 0 chr11 94040284 94040364 -27803492 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1302 441 138 0 0 chr11 94040482 94040576 -27803280 + (TCTCTG)n Simple_repeat Simple_repeat 3 96 0 1 1302 356 265 39 39 chr11 94040837 94040939 -27802917 - PB1D7 SINE Alu -11 109 8 1 1302 646 147 9 18 chr11 94041048 94041154 -27802702 + PB1D9 SINE Alu 2 107 -13 1 1302 183 80 0 0 chr11 94041154 94041179 -27802677 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1302 521 250 57 0 chr11 94041306 94041430 -27802426 + ID_B1 SINE B4 82 212 -12 1 1302 243 0 0 0 chr11 94041431 94041458 -27802398 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1302 207 0 0 0 chr11 94041498 94041521 -27802335 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1302 259 161 22 54 chr11 94042072 94042164 -27801692 + GA-rich Low_complexity Low_complexity 3 91 0 1 1302 303 271 92 18 chr11 94042300 94042409 -27801447 - PB1D9 SINE Alu -2 118 2 1 1302 282 128 0 21 chr11 94042524 94042572 -27801284 - RMER10A LTR ERVL -395 47 1 1 1302 468 0 0 0 chr11 94043643 94043695 -27800161 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1 1302 297 0 0 0 chr11 94043748 94043781 -27800075 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 1 1302 218 293 0 51 chr11 94044608 94044687 -27799169 - ID4_ SINE ID -2 81 7 1 1302 287 290 23 10 chr11 94044703 94044828 -27799028 - B1F1 SINE Alu -7 142 10 1 1302 338 267 122 19 chr11 94044881 94044988 -27798868 - RSINE1 SINE B4 -18 147 30 1 1302 365 238 134 30 chr11 94045149 94045283 -27798573 - B1F1 SINE Alu 0 149 2 1 1302 636 81 0 0 chr11 94045353 94045440 -27798416 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1 1302 585 50 0 12 chr11 94045452 94045465 -27798391 - B1_Mur4 SINE Alu 0 150 138 1 1302 261 0 0 0 chr11 94045465 94045494 -27798362 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1302 585 50 0 12 chr11 94045494 94045561 -27798295 - B1_Mur4 SINE Alu -13 137 71 1 1302 504 253 78 26 chr11 94045887 94046041 -27797815 - MLT1A1 LTR MaLR 0 408 247 1 1302 1313 67 66 17 chr11 94046898 94047079 -27796777 + B2_Mm1a SINE B2 2 191 -2 1 1302 216 382 19 19 chr11 94047202 94047306 -27796550 + B4 SINE B4 10 113 -179 1 1302 687 88 0 0 chr11 94047458 94047571 -27796285 + (GA)n Simple_repeat Simple_repeat 2 114 0 1 1302 584 261 21 7 chr11 94047607 94047750 -27796106 + B1_Mus2 SINE Alu 1 145 -2 1 1302 1286 27 0 0 chr11 94048049 94048195 -27795661 + B1_Mus1 SINE Alu 2 147 -1 1 1302 396 0 0 0 chr11 94048195 94048239 -27795617 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 1302 597 273 58 42 chr11 94048312 94048503 -27795353 + B3A SINE B2 5 198 0 1 1302 329 310 31 118 chr11 94048565 94048726 -27795130 + B4 SINE B4 77 223 -69 1 1302 717 201 0 21 chr11 94048585 94048727 -27795129 + B1_Mur1 SINE Alu 10 148 -1 1 1302 720 157 0 0 chr11 94048822 94048943 -27794913 - B1_Mus2 SINE Alu -21 126 6 1 1302 314 260 100 0 chr11 94049466 94049566 -27794290 - MLT1A0 LTR MaLR 0 365 256 1 1302 263 49 24 0 chr11 94049633 94049674 -27794182 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1302 1169 61 0 7 chr11 94049674 94049813 -27794043 - B1_Mus1 SINE Alu -8 140 2 1 1302 309 26 0 0 chr11 94049826 94049864 -27793992 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1302 266 273 15 0 chr11 94049870 94049936 -27793920 - ID4_ SINE ID -12 71 5 1 1302 456 19 0 0 chr11 94049954 94050007 -27793849 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 1 1302 825 206 12 6 chr11 94050013 94050174 -27793682 - B3 SINE B2 -7 209 48 1 1302 404 208 102 23 chr11 94050201 94050329 -27793527 - ID_B1 SINE B4 0 224 87 1 1302 254 224 141 0 chr11 94050402 94050473 -27793383 + ID_B1 SINE B4 128 210 -14 1 1302 537 16 0 0 chr11 94050473 94050535 -27793321 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1302 254 224 141 0 chr11 94050535 94050548 -27793308 + ID_B1 SINE B4 211 223 -1 1 1302 544 198 22 60 chr11 94051396 94051530 -27792326 + B1F2 SINE Alu 21 149 0 1 1302 442 317 27 7 chr11 94052207 94052353 -27791503 + B1F1 SINE Alu 1 149 0 1 1302 538 135 101 0 chr11 94052388 94052477 -27791379 + B1_Mur4 SINE Alu 46 143 -7 1 1302 318 48 62 16 chr11 94052490 94052554 -27791302 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 1 1302 287 219 68 0 chr11 94053006 94053079 -27790777 + MER96B DNA hAT 20 97 -320 1 1302 1223 203 19 0 chr11 94053086 94053298 -27790558 - B3 SINE B2 0 216 1 1 1302 496 288 64 7 chr11 94053303 94053443 -27790413 - B1F SINE Alu -1 148 1 1 1302 240 35 0 0 chr11 94053454 94053483 -27790373 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1302 1260 47 0 0 chr11 94053494 94053642 -27790214 - B1_Mus1 SINE Alu 0 148 1 1 1302 680 196 0 6 chr11 94053971 94054151 -27789705 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1302 580 200 0 11 chr11 94054188 94054370 -27789486 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1302 333 360 90 20 chr11 94054856 94055057 -27788799 - B3 SINE B2 0 216 2 1 1302 647 279 12 36 chr11 94054892 94055059 -27788797 - RSINE1 SINE B4 -2 163 1 1 1302 731 92 10 5 chr11 94055434 94055552 -27788304 - B1_Mus1 SINE Alu -1 119 5 1 1302 315 0 0 0 chr11 94055556 94055591 -27788265 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 1302 814 179 8 0 chr11 94055591 94055725 -27788131 - B1_Mus1 SINE Alu -12 136 2 1 1302 715 235 75 17 chr11 94056483 94056635 -27787221 + B3 SINE B2 1 164 -52 1 1302 378 0 0 0 chr11 94056635 94056677 -27787179 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1302 715 235 75 17 chr11 94056677 94056697 -27787159 + B3 SINE B2 165 183 -33 1 1302 703 191 32 0 chr11 94056971 94057097 -27786759 - B1_Mur1 SINE Alu -8 141 12 1 1302 406 298 76 0 chr11 94056996 94057127 -27786729 - B4 SINE B4 -87 205 65 1 1302 929 195 7 0 chr11 94057129 94057283 -27786573 - B3 SINE B2 -61 155 1 1 1302 405 282 71 18 chr11 94057299 94057411 -27786445 - RSINE1 SINE B4 -46 119 2 1 1302 464 231 12 31 chr11 94058225 94058369 -27785487 - PB1D10 SINE Alu 0 149 8 1 1302 405 297 0 76 chr11 94058242 94058399 -27785457 - ID_B1 SINE B4 -16 208 64 1 1302 359 302 99 70 chr11 94058451 94058622 -27785234 + MER63A DNA AcHobo 35 210 0 1 1302 456 260 63 63 chr11 94058674 94058785 -27785071 + PB1D10 SINE Alu 10 120 -29 1 1302 916 233 64 5 chr11 94059070 94059273 -27784583 - B3 SINE B2 0 216 2 1 1302 256 354 89 73 chr11 94059290 94059549 -27784307 + MLT1G1 LTR MaLR 151 413 -166 1 1302 429 256 16 49 chr11 94060149 94060272 -27783584 + PB1D7 SINE Alu 1 119 -1 1 1302 435 83 0 0 chr11 94060772 94060832 -27783024 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 1 1302 1121 70 7 7 chr11 94060937 94061080 -27782776 + B1_Mus2 SINE Alu 5 147 0 1 1302 28 29 0 0 chr11 94061793 94061828 -27782028 + AT_rich Low_complexity Low_complexity 1 35 0 1 1302 499 298 25 6 chr11 94061856 94062015 -27781841 - RSINE1 SINE B4 -1 164 3 1 1302 500 271 90 8 chr11 94062084 94062218 -27781638 + ID_B1 SINE B4 80 224 0 1 1302 303 329 0 0 chr11 94062504 94062586 -27781270 - B1F1 SINE Alu 0 149 68 1 1302 750 126 9 9 chr11 94063160 94063272 -27780584 - MTC LTR MaLR -308 113 2 1 1302 204 283 0 19 chr11 94063830 94063884 -27779972 + GA-rich Low_complexity Low_complexity 2 54 0 1 1302 241 323 86 8 chr11 94063957 94064085 -27779771 - MIRc SINE MIR -126 142 5 1 1302 1590 37 21 0 chr11 94064170 94064358 -27779498 + B2_Mm1a SINE B2 1 192 -1 1 1302 22 35 0 0 chr11 94064451 94064480 -27779376 + AT_rich Low_complexity Low_complexity 1 29 0 1 1302 261 0 0 0 chr11 94064485 94064514 -27779342 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1302 507 317 0 0 chr11 94064522 94064645 -27779211 - RSINE1 SINE B4 -39 126 4 1 1302 496 292 14 0 chr11 94064690 94064834 -27779022 + B1_Mur2 SINE Alu 3 148 -1 1 1302 335 316 109 7 chr11 94065111 94065248 -27778608 + RSINE1 SINE B4 15 165 0 1 1302 250 307 78 8 chr11 94065393 94065521 -27778335 + L1M5 LINE L1 5477 5613 -511 1 1302 250 245 217 42 chr11 94065631 94065797 -27778059 + L1M5 LINE L1 5628 5822 -302 1 1302 1045 122 0 0 chr11 94065808 94065955 -27777901 + B1_Mus2 SINE Alu 1 147 0 1 1302 208 156 0 0 chr11 94066095 94066127 -27777729 + (CAGAGA)n Simple_repeat Simple_repeat 1 32 0 1 1302 446 258 125 0 chr11 94066127 94066255 -27777601 + B4A SINE B4 127 270 -22 1 1302 228 180 0 39 chr11 94066362 94066414 -27777442 - PB1D10 SINE Alu -1 116 67 1 1302 394 271 0 40 chr11 94066369 94066469 -27777387 - ID_B1 SINE B4 -7 217 122 1 1302 534 264 20 48 chr11 94066636 94066783 -27777073 - RSINE1 SINE B4 -20 145 3 1 1302 285 238 16 0 chr11 94067198 94067261 -27776595 - PB1D10 SINE Alu -8 109 46 1 1302 432 331 115 28 chr11 94067321 94067607 -27776249 + MLT1G3 LTR MaLR 70 380 -211 1 1302 524 288 40 61 chr11 94067756 94067972 -27775884 + MLT1G3 LTR MaLR 379 595 0 1 1302 285 330 11 11 chr11 94068741 94068833 -27775023 - PB1D10 SINE Alu -12 105 14 1 1302 648 252 22 0 chr11 94068870 94069005 -27774851 - ID_B1 SINE B4 -5 219 82 1 1302 237 300 84 14 chr11 94069036 94069107 -27774749 - PB1D10 SINE Alu -40 77 2 1 1302 26 0 0 0 chr11 94069107 94069133 -27774723 + AT_rich Low_complexity Low_complexity 1 26 0 1 1302 189 0 0 0 chr11 94069351 94069372 -27774484 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1302 476 245 0 21 chr11 94069692 94069788 -27774068 - PB1D10 SINE Alu -12 105 12 1 1302 548 242 47 8 chr11 94069814 94069943 -27773913 - B1F SINE Alu -6 143 10 1 1302 523 216 135 8 chr11 94070230 94070356 -27773500 - B1F SINE Alu -7 142 1 2 1302 23 0 0 0 chr11 94070892 94070915 -27772941 + AT_rich Low_complexity Low_complexity 1 23 0 2 1302 192 135 0 0 chr11 94072377 94072414 -27771442 + (C)n Simple_repeat Simple_repeat 1 37 0 2 1302 612 50 0 0 chr11 94073480 94073560 -27770296 + (TCC)n Simple_repeat Simple_repeat 2 81 0 2 1302 27 0 0 0 chr11 94074880 94074907 -27768949 + AT_rich Low_complexity Low_complexity 1 27 0 2 1302 436 156 0 24 chr11 94075667 94075792 -27768064 + (CAG)n Simple_repeat Simple_repeat 1 122 0 2 1302 22 0 0 0 chr11 94076312 94076334 -27767522 + AT_rich Low_complexity Low_complexity 1 22 0 2 1302 332 258 78 70 chr11 94076942 94077084 -27766772 + B4A SINE B4 2 144 -148 2 1302 420 150 162 48 chr11 94077421 94077526 -27766330 + PB1D9 SINE Alu 4 120 0 2 1302 751 241 0 0 chr11 94078545 94078682 -27765174 - ID_B1 SINE B4 0 224 88 2 1302 707 144 116 43 chr11 94078923 94079061 -27764795 + B1_Mur4 SINE Alu 3 150 0 2 1302 1550 45 0 0 chr11 94079078 94079255 -27764601 + B2_Mm1a SINE B2 2 178 -15 2 1302 197 33 0 32 chr11 94079255 94079286 -27764570 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1302 964 239 67 4 chr11 94079441 94079681 -27764175 - MER2 DNA MER2_type -1 344 90 2 1302 189 0 0 0 chr11 94079886 94079907 -27763949 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 2 1302 180 0 0 0 chr11 94080329 94080349 -27763507 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2 1302 364 221 0 0 chr11 94080374 94080442 -27763414 + ID_B1 SINE B4 82 149 -75 2 1302 241 303 21 159 chr11 94080468 94080613 -27763243 - MLT1A0 LTR MaLR -240 125 1 2 1302 793 197 13 20 chr11 94080823 94080973 -27762883 - B1_Mur3 SINE Alu 0 149 1 2 1302 184 163 45 37 chr11 94081163 94081297 -27762559 + (TG)n Simple_repeat Simple_repeat 1 135 0 2 1302 562 234 146 21 chr11 94081297 94081441 -27762415 - RSINE1 SINE B4 0 165 4 2 1302 417 205 0 13 chr11 94081448 94081527 -27762329 - PB1D10 SINE Alu -17 100 23 2 1302 630 247 20 33 chr11 94082134 94082285 -27761571 - B1F2 SINE Alu 0 149 1 2 1302 717 261 91 24 chr11 94083184 94083392 -27760464 + B4A SINE B4 2 223 -69 2 1302 191 188 21 0 chr11 94083430 94083478 -27760378 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1302 1201 119 0 6 chr11 94083725 94083882 -27759974 + B2_Mm2 SINE B2 3 159 -36 2 1302 213 65 0 0 chr11 94083882 94083913 -27759943 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2 1302 1201 119 0 6 chr11 94083913 94083924 -27759932 + B2_Mm2 SINE B2 160 170 -25 2 1302 346 294 46 92 chr11 94084699 94084830 -27759026 - PB1 SINE Alu -1 126 2 2 1302 486 268 0 43 chr11 94084716 94084833 -27759023 - ID_B1 SINE B4 -33 191 80 2 1302 549 125 0 0 chr11 94085381 94085469 -27758387 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 2 1302 258 32 0 0 chr11 94085469 94085499 -27758357 + (CCTA)n Simple_repeat Simple_repeat 3 33 0 2 1302 765 161 0 0 chr11 94085653 94085771 -27758085 - B1_Mus2 SINE Alu -29 118 1 2 1302 230 197 38 50 chr11 94085842 94085922 -27757934 + (CATA)n Simple_repeat Simple_repeat 4 82 0 2 1302 832 216 85 21 chr11 94085948 94086137 -27757719 + ID_B1 SINE B4 24 224 0 2 1302 1173 44 0 0 chr11 94086234 94086371 -27757485 + B1_Mus1 SINE Alu 1 137 -11 2 1302 416 19 19 0 chr11 94086371 94086424 -27757432 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1302 279 0 0 0 chr11 94087198 94087229 -27756627 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1302 714 272 91 1 chr11 94087742 94087944 -27755912 + ID_B1 SINE B4 2 224 0 2 1302 588 70 0 0 chr11 94087957 94088043 -27755813 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 2 1302 483 111 86 57 chr11 94088512 94088618 -27755238 + PB1D9 SINE Alu 1 120 0 2 1302 352 312 71 93 chr11 94089033 94089259 -27754597 + MIRb SINE MIR 18 238 -30 2 1302 348 244 209 0 chr11 94089943 94090058 -27753798 - MIR SINE MIR -102 160 22 2 1302 369 0 0 0 chr11 94090200 94090241 -27753615 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1302 589 165 112 97 chr11 94090269 94090403 -27753453 - RSINE1 SINE B4 -28 137 2 2 1302 332 279 63 21 chr11 94090404 94090547 -27753309 - B1F SINE Alu 0 149 1 2 1302 510 17 0 0 chr11 94090842 94090901 -27752955 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1302 246 256 48 24 chr11 94091296 94091380 -27752476 + Charlie5 DNA MER1_type 28 113 -2511 2 1302 244 388 59 7 chr11 94091545 94091680 -27752176 + MIRc SINE MIR 8 149 -119 2 1302 1074 237 103 133 chr11 94091907 94092081 -27751775 - MTEa LTR MaLR -16 363 165 2 1302 495 0 0 0 chr11 94092081 94092136 -27751720 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1302 785 279 91 53 chr11 94092138 94092403 -27751453 - B4 SINE B4 -13 279 5 2 1302 1074 237 103 133 chr11 94092403 94092585 -27751271 - MTEa LTR MaLR -215 164 15 2 1302 729 125 0 0 chr11 94093814 94093934 -27749922 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1302 225 65 0 0 chr11 94094074 94094105 -27749751 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1302 663 196 127 44 chr11 94094204 94094385 -27749471 - B4A SINE B4 -55 237 42 2 1302 830 38 9 0 chr11 94094409 94094515 -27749341 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2 1302 308 242 74 0 chr11 94094524 94094619 -27749237 - PB1D10 SINE Alu -1 116 15 2 1302 224 288 0 48 chr11 94094570 94094632 -27749224 - B4A SINE B4 -144 148 90 2 1302 486 303 7 21 chr11 94095615 94095760 -27748096 + B1_Mus1 SINE Alu 4 146 -2 2 1302 487 275 29 59 chr11 94095768 94095938 -27747918 + B4A SINE B4 2 166 -126 2 1302 210 279 103 0 chr11 94095961 94096029 -27747827 + RSINE1 SINE B4 83 157 -8 2 1302 1064 97 0 0 chr11 94098325 94098459 -27745397 + B1_Mus2 SINE Alu 1 134 -13 2 1302 372 224 14 30 chr11 94098568 94098669 -27745187 - MIR SINE MIR -103 159 61 2 1302 198 0 0 0 chr11 94098862 94098884 -27744972 + (TGGG)n Simple_repeat Simple_repeat 2 23 0 2 1302 352 249 23 22 chr11 94100591 94100717 -27743139 - MIR3 SINE MIR -26 182 55 2 1302 187 211 71 71 chr11 94101560 94101616 -27742240 - L2b LINE L2 -53 3322 3267 2 1302 232 301 151 28 chr11 94105121 94105227 -27738629 - MIRb SINE MIR -63 205 87 2 1302 270 0 0 0 chr11 94105341 94105371 -27738485 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1302 413 314 92 91 chr11 94109065 94109448 -27734408 + MLT1B LTR MaLR 6 504 -1 2 1303 441 232 95 0 chr11 94110155 94110250 -27733606 - PB1D10 SINE Alu -13 104 1 2 1303 1335 144 36 5 chr11 94110283 94110506 -27733350 + ORR1B1 LTR MaLR 165 394 0 2 1303 575 233 7 36 chr11 94110567 94110705 -27733151 + ID_B1 SINE B4 91 224 0 2 1303 1317 112 11 0 chr11 94110770 94110957 -27732899 + B2_Mm2 SINE B2 1 189 -6 2 1303 843 143 36 0 chr11 94110958 94111126 -27732730 + GA-rich Low_complexity Low_complexity 1 174 0 2 1303 532 319 57 106 chr11 94111157 94111581 -27732275 + MLT1A1 LTR MaLR 1 403 -5 2 1303 1229 192 9 5 chr11 94111643 94111858 -27731998 + B3 SINE B2 1 216 0 2 1303 1154 309 77 51 chr11 94111959 94112610 -27731246 + L1MC LINE L1 4556 5223 -923 2 1303 236 196 0 56 chr11 94112628 94112682 -27731174 - MTE2a LTR MaLR -2 417 367 2 1303 846 138 0 0 chr11 94112683 94112813 -27731043 + B1_Mus1 SINE Alu 4 133 -15 2 1303 203 0 0 146 chr11 94112817 94112834 -27731022 + (TTTTTG)n Simple_repeat Simple_repeat 4 18 0 2 1303 318 26 0 0 chr11 94112834 94112873 -27730983 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1303 203 0 0 146 chr11 94112873 94112895 -27730961 + (TTTTTG)n Simple_repeat Simple_repeat 1 21 0 2 1303 1216 54 0 0 chr11 94112895 94113042 -27730814 - B1_Mus2 SINE Alu 0 147 1 2 1303 203 0 0 146 chr11 94113042 94113056 -27730800 + (TTTTTG)n Simple_repeat Simple_repeat 2 12 0 2 1303 198 0 0 0 chr11 94113058 94113080 -27730776 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 2 1303 446 290 45 56 chr11 94113090 94113269 -27730587 - MTE2a LTR MaLR -76 303 127 2 1303 402 350 117 26 chr11 94113737 94114001 -27729855 + MLT1H1 LTR MaLR 15 302 -253 2 1303 185 296 11 110 chr11 94114726 94114817 -27729039 - L2b LINE L2 -318 3057 2976 2 1303 1503 186 173 126 chr11 94115463 94115686 -27728170 + MT2A LTR ERVL 1 178 -355 2 1303 1473 73 5 0 chr11 94115686 94115877 -27727979 - B2_Mm1a SINE B2 0 193 2 2 1303 1503 186 173 126 chr11 94115877 94116162 -27727694 + MT2A LTR ERVL 179 533 0 2 1303 369 0 0 0 chr11 94116783 94116824 -27727032 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1303 303 127 0 0 chr11 94116980 94117043 -27726813 + (A)n Simple_repeat Simple_repeat 1 63 0 2 1303 634 143 159 45 chr11 94117387 94117519 -27726337 - B1_Mur3 SINE Alu 0 149 3 2 1303 1915 142 21 82 chr11 94118136 94118513 -27725343 - ORR1B1 LTR MaLR 0 394 41 2 1303 397 309 97 17 chr11 94118538 94118775 -27725081 + L1MB8 LINE L1 5787 6042 -136 2 1303 1030 228 112 158 chr11 94120037 94120511 -27723345 + RMER4B LTR ERVK 1 452 -14 2 1303 1118 188 5 46 chr11 94120658 94120876 -27722980 - B3 SINE B2 -7 209 1 2 1303 257 274 136 10 chr11 94120902 94120982 -27722874 + PB1D7 SINE Alu 2 94 -26 2 1303 279 0 0 0 chr11 94120982 94121013 -27722843 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 2 1303 257 274 136 10 chr11 94121013 94121035 -27722821 + PB1D7 SINE Alu 95 117 -3 2 1303 1690 158 62 65 chr11 94121044 94121415 -27722441 - ORR1C1 LTR MaLR -8 370 1 2 1303 234 188 104 0 chr11 94121541 94121589 -27722267 - PB1D9 SINE Alu -3 117 65 2 1303 581 307 15 0 chr11 94121546 94121683 -27722173 - ID_B1 SINE B4 -8 216 78 2 1303 518 259 0 26 chr11 94121686 94121801 -27722055 - PB1D10 SINE Alu -1 116 5 3 1303 664 127 210 8 chr11 94121810 94121929 -27721927 - B1_Mur4 SINE Alu 0 150 8 3 1303 271 246 0 58 chr11 94121879 94121948 -27721908 - B4 SINE B4 -151 141 77 3 1303 352 253 84 0 chr11 94122046 94122141 -27721715 - MLT1D LTR MaLR -65 440 338 3 1303 265 163 0 0 chr11 94122161 94122204 -27721652 + ID_B1 SINE B4 182 224 0 3 1303 192 77 0 0 chr11 94123287 94123313 -27720543 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 3 1303 2184 152 31 119 chr11 94123713 94124013 -27719843 - MTC LTR MaLR -7 414 117 3 1303 1231 54 0 0 chr11 94124013 94124160 -27719696 + B1_Mus1 SINE Alu 2 148 0 3 1303 2184 152 31 119 chr11 94124160 94124313 -27719543 - MTC LTR MaLR -305 116 1 3 1303 420 204 112 0 chr11 94124420 94124518 -27719338 + PB1D7 SINE Alu 3 111 -9 3 1303 843 222 75 5 chr11 94124553 94124752 -27719104 + B3 SINE B2 1 213 -3 3 1303 379 186 0 55 chr11 94124829 94124920 -27718936 - B3 SINE B2 0 216 131 3 1303 614 264 152 35 chr11 94124922 94125232 -27718624 - L1MB5 LINE L1 -102 6072 5727 3 1303 633 237 0 41 chr11 94125498 94125643 -27718213 - B1_Mur1 SINE Alu -8 141 3 3 1303 1991 219 241 63 chr11 94125643 94126448 -27717408 + RMER1A Other Other 1 877 -153 3 1303 216 0 0 0 chr11 94126480 94126504 -27717352 + (AGGGGG)n Simple_repeat Simple_repeat 3 26 0 3 1303 359 320 29 0 chr11 94126508 94126611 -27717245 - RSINE1 SINE B4 -57 108 3 3 1303 1134 68 0 7 chr11 94127348 94127496 -27716360 + B1_Mus2 SINE Alu 1 147 0 3 1303 558 43 0 0 chr11 94127496 94127565 -27716291 + (GGAAA)n Simple_repeat Simple_repeat 3 71 0 3 1303 977 267 28 112 chr11 94127943 94128334 -27715522 + MTE2a LTR MaLR 19 399 -20 3 1303 769 266 8 79 chr11 94128296 94128537 -27715319 - ID_B1 SINE B4 0 224 1 3 1303 855 111 8 8 chr11 94128668 94128795 -27715061 - B1_Mur4 SINE Alu -21 129 3 3 1303 402 21 0 0 chr11 94129172 94129219 -27714637 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1303 646 366 68 47 chr11 94129318 94129656 -27714200 - MLT1J-int LTR MaLR -452 935 591 3 1303 411 273 61 88 chr11 94129765 94129790 -27714066 - B2_Mm1a SINE B2 -17 176 149 3 1303 377 39 20 0 chr11 94129790 94129841 -27714015 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1303 597 261 40 46 chr11 94129841 94129996 -27713860 - B3A SINE B2 -46 152 1 3 1303 316 326 2 4 chr11 94129998 94130095 -27713761 - ID4_ SINE ID -51 101 6 3 1303 381 311 76 29 chr11 94130095 94130267 -27713589 - MLT1J-int LTR MaLR -940 447 268 3 1303 1726 148 83 127 chr11 94130613 94130691 -27713165 - ORR1C1 LTR MaLR 0 378 314 3 1303 742 166 7 65 chr11 94130691 94130846 -27713010 - B1_Mus1 SINE Alu -2 146 1 3 1303 1726 148 83 127 chr11 94130846 94130870 -27712986 - ORR1C1 LTR MaLR -65 313 301 3 1303 2585 184 12 18 chr11 94130870 94131378 -27712478 + RLTR16 LTR ERVK 1 505 0 3 1303 1726 148 83 127 chr11 94131378 94131669 -27712187 - ORR1C1 LTR MaLR -78 300 1 3 1303 331 222 20 109 chr11 94131865 94131966 -27711890 + RSINE1 SINE B4 6 97 -68 3 1303 793 146 229 45 chr11 94132228 94132407 -27711449 + B3 SINE B2 1 212 -4 3 1303 366 80 0 0 chr11 94132407 94132457 -27711399 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1303 345 315 83 0 chr11 94132459 94132567 -27711289 + B1F SINE Alu 1 117 -32 3 1303 225 0 0 0 chr11 94132567 94132592 -27711264 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1303 288 0 0 0 chr11 94132700 94132732 -27711124 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1303 756 161 0 81 chr11 94132732 94132881 -27710975 - B1_Mur3 SINE Alu -9 140 4 3 1303 270 301 136 0 chr11 94133022 94133125 -27710731 - MLT1J2 LTR MaLR -234 214 98 3 1303 361 330 18 45 chr11 94134178 94134289 -27709567 - PB1D10 SINE Alu -3 114 7 3 1303 316 335 129 32 chr11 94135080 94135428 -27708428 + L2b LINE L2 2956 3337 -38 3 1303 288 267 11 53 chr11 94135601 94135696 -27708160 + MLT1H2 LTR MaLR 72 162 -327 3 1303 254 320 19 37 chr11 94137014 94137121 -27706735 + MLT1H2 LTR MaLR 440 544 -18 3 1303 339 303 45 9 chr11 94138759 94138869 -27704987 + RSINE1 SINE B4 16 129 -36 3 1303 1176 109 0 0 chr11 94139136 94139311 -27704545 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 3 1303 373 81 0 31 chr11 94139332 94139396 -27704460 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1303 838 202 6 34 chr11 94139404 94139583 -27704273 - B3 SINE B2 -42 174 1 3 1303 476 165 110 30 chr11 94139585 94139685 -27704171 - ID_B1 SINE B4 -6 218 111 3 1303 1323 254 98 6 chr11 94139863 94140180 -27703676 + MTEa LTR MaLR 6 351 -28 3 1303 463 169 13 0 chr11 94140189 94140266 -27703590 - B1_Mur2 SINE Alu -32 117 40 3 1303 776 157 76 96 chr11 94140321 94140518 -27703338 + B3A SINE B2 4 196 -2 3 1303 682 290 24 55 chr11 94140540 94140832 -27703024 - B4A SINE B4 -8 284 2 3 1303 276 30 0 0 chr11 94140868 94140901 -27702955 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 3 1303 669 93 271 0 chr11 94140901 94141008 -27702848 - B1_Mus1 SINE Alu -11 137 2 3 1303 515 253 150 118 chr11 94141472 94141812 -27702044 - ORR1E LTR MaLR -6 353 3 3 1303 396 0 0 0 chr11 94141945 94141989 -27701867 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1303 286 295 24 92 chr11 94142027 94142186 -27701670 - LTR40a LTR ERVL -323 196 51 3 1303 270 280 132 25 chr11 94142196 94142317 -27701539 - RSINE1 SINE B4 -29 136 3 3 1303 222 287 104 47 chr11 94142833 94142939 -27700917 + MIR SINE MIR 25 136 -72 3 1303 234 0 0 0 chr11 94143542 94143568 -27700288 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1303 625 89 56 0 chr11 94144229 94144319 -27699537 - B2_Mm2 SINE B2 -99 96 2 3 1303 1073 158 70 20 chr11 94145157 94145357 -27698499 - B3 SINE B2 -5 211 2 3 1303 345 272 117 0 chr11 94145452 94145555 -27698301 + PB1D10 SINE Alu 2 116 -1 3 1303 549 238 122 24 chr11 94145557 94145721 -27698135 + B3A SINE B2 1 180 -18 3 1303 1314 98 16 11 chr11 94146455 94146641 -27697215 - B2_Mm2 SINE B2 -7 188 2 3 1303 335 144 240 46 chr11 94146724 94146826 -27697030 + B1_Mus1 SINE Alu 1 108 -9 3 1303 257 236 40 53 chr11 94146931 94147007 -27696849 + B1_Mus1 SINE Alu 2 76 -72 3 1303 22 0 0 0 chr11 94149212 94149234 -27694622 + AT_rich Low_complexity Low_complexity 1 22 0 3 1303 260 286 90 63 chr11 94149423 94149722 -27694134 - L1ME3B LINE L1 -297 5943 5637 3 1303 351 0 0 0 chr11 94150497 94150536 -27693320 + (TATG)n Simple_repeat Simple_repeat 3 41 0 3 1303 216 0 0 0 chr11 94151120 94151144 -27692712 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1303 246 32 0 0 chr11 94151144 94151174 -27692682 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1303 182 311 0 32 chr11 94151802 94151865 -27691991 + MIR SINE MIR 120 180 -82 3 1303 30 0 0 0 chr11 94152739 94152769 -27691087 + AT_rich Low_complexity Low_complexity 1 30 0 3 1303 180 111 0 0 chr11 94154075 94154102 -27689754 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1303 483 88 0 26 chr11 94157509 94157593 -27686263 + B1_Mus2 SINE Alu 37 141 -6 3 1303 225 203 0 104 chr11 94157526 94157603 -27686253 + ID_B1 SINE B4 156 224 0 3 1303 569 223 0 0 chr11 94157652 94157755 -27686101 + B1_Mur1 SINE Alu 21 123 -26 3 1303 503 348 42 11 chr11 94157867 94158056 -27685800 + Tigger5 DNA MER2_type 43 237 -2169 3 1303 235 204 9 46 chr11 94158325 94158433 -27685423 + CT-rich Low_complexity Low_complexity 3 106 0 3 1303 261 329 13 0 chr11 94158508 94158587 -27685269 - ID4 SINE ID -2 81 2 3 1303 412 315 115 0 chr11 94159706 94159836 -27684020 + RSINE1 SINE B4 16 160 -5 3 1303 1431 217 108 6 chr11 94160197 94160521 -27683335 + MER21B LTR ERV1 273 629 -234 3 1303 290 327 78 10 chr11 94160607 94160709 -27683147 + MER21B LTR ERV1 656 764 -99 3 1303 340 217 0 14 chr11 94160734 94160804 -27683052 + BC1_Mm scRNA scRNA 7 75 -77 3 1303 1651 42 0 0 chr11 94160943 94161135 -27682721 - B2_Mm1t SINE B2 0 193 2 3 1303 386 285 141 82 chr11 94161528 94161834 -27682022 - L1ME1 LINE L1 -66 6113 5790 3 1303 433 254 42 8 chr11 94161845 94161964 -27681892 - B1F1 SINE Alu 0 149 27 3 1303 1139 102 0 0 chr11 94162132 94162279 -27681577 + B1_Mus2 SINE Alu 1 147 0 3 1303 201 74 0 0 chr11 94162279 94162306 -27681550 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1303 517 147 12 29 chr11 94162451 94162553 -27681303 - B1_Mur4 SINE Alu 0 150 25 3 1303 220 304 18 0 chr11 94163113 94163169 -27680687 - B1F1 SINE Alu -88 61 5 3 1303 638 196 63 28 chr11 94163205 94163347 -27680509 + B1_Mus2 SINE Alu 1 147 0 3 1303 1181 68 0 7 chr11 94163435 94163582 -27680274 - B1_Mus2 SINE Alu 0 147 2 3 1303 493 250 8 8 chr11 94163692 94163809 -27680047 + PB1D10 SINE Alu 1 117 0 3 1303 192 125 0 0 chr11 94163809 94163841 -27680015 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1303 302 219 39 68 chr11 94164074 94164177 -27679679 - MIR SINE MIR -82 180 81 3 1303 231 288 274 41 chr11 94164203 94164572 -27679284 + L2 LINE L2 2369 2823 -596 3 1303 250 246 92 0 chr11 94164900 94164965 -27678891 + tRNA-Ala-GCY_ tRNA tRNA 5 75 0 3 1303 337 315 18 27 chr11 94165544 94165655 -27678201 - PB1D10 SINE Alu -5 112 3 3 1303 450 329 72 0 chr11 94165761 94165913 -27677943 + RSINE1 SINE B4 1 163 -2 3 1303 1544 6 0 0 chr11 94165915 94166087 -27677769 + L1_Mm LINE L1 3428 3599 -2284 3 1303 1539 48 0 5 chr11 94166123 94166310 -27677546 + B2_Mm2 SINE B2 2 187 -8 3 1303 527 225 85 0 chr11 94166333 94166462 -27677394 + B1_Mur1 SINE Alu 1 140 -9 3 1303 683 158 120 0 chr11 94166492 94166625 -27677231 + B1_Mur2 SINE Alu 1 149 0 4 1303 248 184 0 0 chr11 94166691 94166740 -27677116 + B1_Mm SINE Alu 99 147 0 4 1303 264 264 0 0 chr11 94166763 94166816 -27677040 + B4A SINE B4 1 53 -239 4 1303 285 325 83 48 chr11 94167022 94167190 -27676666 + B4 SINE B4 1 174 -118 4 1303 216 234 108 72 chr11 94167605 94167688 -27676168 - PB1D10 SINE Alu -4 113 28 4 1303 458 178 99 85 chr11 94168295 94168436 -27675420 + B1_Mur3 SINE Alu 2 144 -5 4 1303 1285 81 17 0 chr11 94168452 94168625 -27675231 + B2_Mm1t SINE B2 4 179 -14 4 1303 1626 36 0 20 chr11 94168647 94168844 -27675012 + B2_Mm1a SINE B2 1 193 0 4 1303 387 0 0 0 chr11 94168950 94168993 -27674863 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1303 423 268 127 54 chr11 94169001 94169167 -27674689 - B4A SINE B4 -113 179 2 4 1303 462 228 101 47 chr11 94169454 94169583 -27674273 - B3A SINE B2 -60 138 3 4 1303 489 308 101 20 chr11 94170094 94170293 -27673563 + MER20 DNA MER1_type 2 216 -3 4 1303 275 276 98 49 chr11 94170488 94170610 -27673246 + B1F SINE Alu 1 128 -21 4 1303 356 263 111 0 chr11 94170794 94170893 -27672963 - PB1D10 SINE Alu -5 112 3 4 1303 1209 111 33 0 chr11 94171090 94171271 -27672585 - B2_Mm2 SINE B2 -8 187 1 4 1303 1191 55 0 7 chr11 94171291 94171438 -27672418 - B1_Mus1 SINE Alu -2 146 1 4 1303 22 0 0 0 chr11 94171509 94171531 -27672325 + AT_rich Low_complexity Low_complexity 1 22 0 4 1303 820 153 0 44 chr11 94171682 94171819 -27672037 - B1_Mus2 SINE Alu -15 132 2 4 1303 378 274 38 0 chr11 94171843 94171949 -27671907 + B3A SINE B2 7 116 -82 4 1303 461 186 203 42 chr11 94171986 94172104 -27671752 + B1_Mur1 SINE Alu 13 149 0 4 1303 367 120 0 39 chr11 94172213 94172291 -27671565 + L1Md_A LINE L1 6508 6582 0 4 1303 331 281 42 0 chr11 94172426 94172522 -27671334 + RSINE1 SINE B4 3 102 -63 4 1303 213 307 17 42 chr11 94172522 94172545 -27671311 + B2_Mm2 SINE B2 2 117 -78 4 1303 367 302 139 0 chr11 94172769 94172898 -27670958 - B1F SINE Alu -2 147 1 4 1303 674 243 105 0 chr11 94172961 94173113 -27670743 - B3 SINE B2 -48 168 1 4 1303 306 283 83 28 chr11 94173270 94173379 -27670477 + PB1D7 SINE Alu 1 115 -5 4 1303 496 295 53 15 chr11 94173381 94173512 -27670344 + RSINE1 SINE B4 1 136 -29 4 1303 1120 82 0 7 chr11 94173635 94173782 -27670074 - B1_Mus2 SINE Alu 0 147 2 4 1303 236 351 27 0 chr11 94174076 94174150 -27669706 - B4A SINE B4 0 292 217 4 1303 624 270 6 30 chr11 94174159 94174323 -27669533 - B4A SINE B4 -37 255 96 4 1303 958 79 0 0 chr11 94175029 94175156 -27668700 + B1_Mus1 SINE Alu 9 135 -13 4 1303 237 33 0 0 chr11 94175156 94175186 -27668670 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1303 232 290 27 96 chr11 94175283 94175326 -27668530 - B4A SINE B4 -94 198 101 4 1303 283 274 41 0 chr11 94175326 94175399 -27668457 - B1F2 SINE Alu -73 76 1 4 1303 202 314 66 55 chr11 94175809 94175900 -27667956 + L2b LINE L2 3052 3143 -232 4 1303 972 238 98 36 chr11 94176193 94176529 -27667327 + ORR1E LTR MaLR 1 419 0 4 1303 573 268 79 31 chr11 94176623 94176850 -27667006 + RMER15 LTR ERVL 76 313 -262 4 1303 538 273 60 53 chr11 94176981 94177132 -27666724 + B3A SINE B2 6 157 -41 4 1303 464 293 8 17 chr11 94177908 94178026 -27665830 + RSINE1 SINE B4 3 119 -46 4 1303 269 302 16 0 chr11 94178266 94178329 -27665527 + ID_B1 SINE B4 112 175 -49 4 1303 710 103 207 0 chr11 94178563 94178679 -27665177 + B1_Mus1 SINE Alu 3 142 -6 4 1303 234 0 0 0 chr11 94178679 94178705 -27665151 + (CTAA)n Simple_repeat Simple_repeat 3 28 0 4 1303 516 178 286 30 chr11 94178744 94178912 -27664944 + B3 SINE B2 3 213 -3 4 1303 426 252 117 0 chr11 94179003 94179106 -27664750 + B3 SINE B2 14 128 -88 4 1303 223 214 16 125 chr11 94179162 94179226 -27664630 - B1_Mur1 SINE Alu -32 117 61 4 1303 272 145 0 83 chr11 94179530 94179590 -27664266 + RSINE1 SINE B4 4 58 -107 4 1303 650 65 333 0 chr11 94179650 94179758 -27664098 + B1_Mus1 SINE Alu 2 145 -3 4 1303 1175 126 60 0 chr11 94179763 94179945 -27663911 + B2_Mm1t SINE B2 1 193 0 4 1303 436 205 15 114 chr11 94180514 94180646 -27663210 - PB1D9 SINE Alu -1 119 1 4 1303 994 17 0 0 chr11 94180664 94180780 -27663076 + B1_Mus2 SINE Alu 19 134 -13 4 1303 292 233 149 11 chr11 94180789 94180876 -27662980 + B1_Mur3 SINE Alu 49 147 -2 4 1303 697 179 28 21 chr11 94180886 94181029 -27662827 + B1_Mus1 SINE Alu 3 146 -2 4 1303 244 48 23 23 chr11 94181029 94181072 -27662784 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1303 514 181 89 57 chr11 94181336 94181459 -27662397 - B1_Mur4 SINE Alu -2 148 22 4 1303 239 293 68 101 chr11 94181339 94181487 -27662369 - B4 SINE B4 -69 223 81 4 1303 1329 99 16 0 chr11 94181589 94181771 -27662085 + B2_Mm1t SINE B2 2 186 -7 4 1303 356 250 80 36 chr11 94181801 94181913 -27661943 + PB1D10 SINE Alu 1 117 0 4 1303 405 0 0 0 chr11 94182153 94182198 -27661658 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1303 354 23 0 0 chr11 94182526 94182569 -27661287 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1303 327 104 0 0 chr11 94182571 94182619 -27661237 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 4 1303 252 238 175 0 chr11 94183683 94183700 -27660156 - ID_B1 SINE B4 -129 95 2 4 1303 274 226 127 16 chr11 94183700 94183763 -27660093 - BC1_Mm scRNA scRNA -81 71 2 4 1303 594 160 168 0 chr11 94183988 94184113 -27659743 - B1_Mur4 SINE Alu 0 150 5 4 1303 648 180 0 54 chr11 94184244 94184373 -27659483 + B1_Mm SINE Alu 21 142 -5 4 1303 326 340 189 0 chr11 94184360 94184519 -27659337 - B4A SINE B4 -72 220 32 4 1303 407 115 198 13 chr11 94184555 94184641 -27659215 + PB1D9 SINE Alu 17 125 -2 4 1303 324 336 73 0 chr11 94184650 94184760 -27659096 + PB1D7 SINE Alu 1 118 -2 4 1303 426 260 72 46 chr11 94184782 94184935 -27658921 + RSINE1 SINE B4 2 158 -7 4 1303 30 21 0 21 chr11 94184954 94184972 -27658884 + AT_rich Low_complexity Low_complexity 1 18 0 4 1303 702 175 222 0 chr11 94184972 94185143 -27658713 + B3 SINE B2 2 210 -6 4 1303 30 21 0 21 chr11 94185143 94185172 -27658684 + AT_rich Low_complexity Low_complexity 1 29 0 4 1303 1579 42 21 0 chr11 94185693 94185884 -27657972 + B2_Mm2 SINE B2 1 195 0 4 1303 282 169 41 110 chr11 94185936 94186009 -27657847 + PB1D7 SINE Alu 32 99 -21 4 1303 297 323 67 46 chr11 94186122 94186404 -27657452 + L2 LINE L2 2137 2424 -995 4 1303 1578 62 0 0 chr11 94186460 94186652 -27657204 + B2_Mm1a SINE B2 2 193 0 4 1303 210 305 0 0 chr11 94186692 94186751 -27657105 + ID2 SINE ID 24 82 -1 4 1303 295 284 0 0 chr11 94186820 94186887 -27656969 + B4A SINE B4 2 68 -224 4 1303 306 0 0 0 chr11 94186903 94186937 -27656919 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1303 950 105 7 15 chr11 94186937 94187072 -27656784 - B1_Mus1 SINE Alu -10 138 5 4 1303 1156 56 14 0 chr11 94187099 94187243 -27656613 - B1_Mus2 SINE Alu 0 147 2 4 1303 373 300 98 15 chr11 94187254 94187386 -27656470 - MTC LTR MaLR -83 338 196 4 1303 1005 40 0 16 chr11 94187429 94187556 -27656300 - B1_Mus1 SINE Alu 0 148 24 4 1303 555 214 13 58 chr11 94187431 94187585 -27656271 - ID_B1 SINE B4 0 224 78 4 1303 235 223 143 23 chr11 94187471 94187589 -27656267 - ORR1B1-int LTR MaLR -755 754 618 4 1303 952 223 18 32 chr11 94187589 94187807 -27656049 - B3 SINE B2 0 216 2 4 1303 235 223 143 23 chr11 94187807 94187821 -27656035 - ORR1B1-int LTR MaLR -892 617 606 4 1303 265 253 76 0 chr11 94187898 94187977 -27655879 - BC1_Mm scRNA scRNA -65 87 3 4 1303 182 62 31 0 chr11 94188658 94188690 -27655166 + (CCCCG)n Simple_repeat Simple_repeat 1 33 0 4 1303 22 0 0 0 chr11 94188716 94188738 -27655118 + AT_rich Low_complexity Low_complexity 1 22 0 4 1303 180 0 0 0 chr11 94188998 94189018 -27654838 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1303 26 0 0 0 chr11 94189251 94189277 -27654579 + GC_rich Low_complexity Low_complexity 1 26 0 4 1303 203 161 15 75 chr11 94189401 94189468 -27654388 + (CGGG)n Simple_repeat Simple_repeat 3 65 0 4 1303 31 82 0 0 chr11 94189486 94189559 -27654297 + GC_rich Low_complexity Low_complexity 1 73 0 4 1303 1240 34 0 13 chr11 94190436 94190585 -27653271 - B1_Mm SINE Alu 0 147 1 4 1303 324 254 175 35 chr11 94191169 94191312 -27652544 - MIR SINE MIR 0 262 100 4 1303 689 300 165 29 chr11 94191500 94192278 -27651578 + L2a LINE L2 2433 3310 -116 4 1303 351 0 0 0 chr11 94192321 94192360 -27651496 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 4 1303 356 295 8 32 chr11 94192364 94192490 -27651366 - PB1 SINE Alu -2 125 3 4 1303 240 382 0 13 chr11 94193309 94193386 -27650470 + ID4 SINE ID 2 77 -6 4 1303 223 338 0 0 chr11 94193387 94193455 -27650401 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 4 1303 367 104 149 0 chr11 94193485 94193552 -27650304 + ID4 SINE ID 4 80 -3 4 1303 316 233 13 52 chr11 94194597 94194674 -27649182 - ID4_ SINE ID -5 78 5 4 1303 1220 55 0 0 chr11 94194728 94194874 -27648982 + B1_Mus2 SINE Alu 2 147 0 5 1303 668 231 8 0 chr11 94194913 94195043 -27648813 - B1_Mur1 SINE Alu -18 131 1 5 1303 339 78 0 0 chr11 94195499 94195550 -27648306 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1303 396 256 16 16 chr11 94196396 94196523 -27647333 - L1MC4 LINE L1 -215 7827 7701 5 1303 803 58 215 0 chr11 94196580 94196701 -27647155 + B1_Mus2 SINE Alu 1 147 0 5 1303 955 129 0 0 chr11 94196782 94196921 -27646935 - B1_Mm SINE Alu 0 147 9 5 1303 684 122 0 149 chr11 94196954 94197118 -27646738 + B1_Mur3 SINE Alu 2 142 -7 5 1303 186 43 0 0 chr11 94197118 94197141 -27646715 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 5 1303 613 285 121 6 chr11 94197194 94197367 -27646489 + B3 SINE B2 17 209 -7 5 1303 701 223 15 0 chr11 94197393 94197523 -27646333 - B3A SINE B2 -66 132 1 5 1303 762 185 0 0 chr11 94197652 94197771 -27646085 + B3 SINE B2 1 119 -97 5 1303 1077 161 109 0 chr11 94197862 94198055 -27645801 - B3 SINE B2 0 216 3 5 1303 690 281 113 45 chr11 94198055 94198390 -27645466 - L1MC4 LINE L1 -982 7060 6703 5 1303 1181 68 0 7 chr11 94198401 94198549 -27645307 + B1_Mus2 SINE Alu 1 147 0 5 1303 246 136 0 0 chr11 94198552 94198596 -27645260 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1303 351 0 0 0 chr11 94198710 94198749 -27645107 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1303 629 277 21 0 chr11 94198751 94198892 -27644964 - B1_Mur1 SINE Alu -5 144 1 5 1303 578 171 67 17 chr11 94199307 94199426 -27644430 - B1_Mur1 SINE Alu 0 149 25 5 1303 419 216 34 67 chr11 94199430 94199549 -27644307 - PB1D10 SINE Alu -2 115 1 5 1303 441 329 0 0 chr11 94200092 94200232 -27643624 - B1F SINE Alu -5 144 5 5 1303 792 203 0 50 chr11 94200633 94200794 -27643062 + RSINE1 SINE B4 3 155 -10 5 1303 261 0 0 0 chr11 94203813 94203842 -27640014 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1303 204 310 57 57 chr11 94206630 94206753 -27637103 - MIRc SINE MIR -133 135 13 5 1303 237 217 233 0 chr11 94208491 94208551 -27635305 - ID2 SINE ID -7 76 3 5 1303 288 267 93 0 chr11 94208551 94208622 -27635234 - PB1D10 SINE Alu -36 81 4 5 1303 337 228 38 0 chr11 94208920 94208999 -27634857 + ID4 SINE ID 2 83 0 5 1303 285 281 12 0 chr11 94209116 94209198 -27634658 + MER33 DNA MER1_type 24 106 -218 5 1303 377 198 10 0 chr11 94209226 94209322 -27634534 + GA-rich Low_complexity Low_complexity 2 98 0 5 1303 618 140 26 61 chr11 94209324 94209438 -27634418 + B1_Mur2 SINE Alu 40 149 0 5 1303 198 0 0 0 chr11 94209527 94209549 -27634307 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 5 1303 351 363 0 0 chr11 94209555 94209646 -27634210 - B1F1 SINE Alu -48 101 11 5 1303 993 147 181 10 chr11 94209747 94209940 -27633916 + URR1A DNA MER1_type 1 226 0 5 1303 549 274 0 0 chr11 94209944 94210050 -27633806 + RSINE1 SINE B4 12 117 -48 5 1303 21 57 0 0 chr11 94210065 94210100 -27633756 + AT_rich Low_complexity Low_complexity 1 35 0 5 1303 312 165 39 0 chr11 94210124 94210182 -27633674 + B1F SINE Alu 56 147 -2 5 1303 207 0 0 0 chr11 94210214 94210237 -27633619 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1303 700 221 21 0 chr11 94210238 94210378 -27633478 - B3A SINE B2 -42 156 14 5 1303 252 0 0 0 chr11 94210450 94210478 -27633378 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1303 405 183 264 19 chr11 94210504 94210610 -27633246 - RSINE1 SINE B4 -31 134 3 5 1303 1994 160 106 6 chr11 94210640 94210998 -27632858 + ORR1B1 LTR MaLR 1 394 0 5 1303 213 196 0 0 chr11 94211027 94211073 -27632783 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 5 1303 1221 74 68 11 chr11 94211100 94211277 -27632579 - B2_Mm2 SINE B2 -7 188 2 5 1303 840 219 114 5 chr11 94211286 94211479 -27632377 - B3 SINE B2 -1 215 2 5 1303 292 228 55 25 chr11 94211503 94211596 -27632260 - MIR SINE MIR -90 178 77 5 1303 290 340 45 0 chr11 94211993 94212117 -27631739 + MIRb SINE MIR 36 168 -94 5 1303 198 0 0 0 chr11 94212664 94212686 -27631170 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1303 203 330 0 22 chr11 94212957 94213047 -27630809 + G-rich Low_complexity Low_complexity 1 88 0 5 1303 183 159 45 0 chr11 94214046 94214090 -27629766 - L2a LINE L2 -306 3120 3075 5 1303 322 297 11 0 chr11 94214157 94214248 -27629608 - ID_B1 SINE B4 -97 127 36 5 1303 264 304 0 42 chr11 94214239 94214311 -27629545 - MER45R DNA Tip100 -1512 69 1 5 1303 368 256 0 0 chr11 94214456 94214538 -27629318 + ID4_ SINE ID 2 83 0 5 1303 233 238 14 34 chr11 94214543 94214691 -27629165 + GA-rich Low_complexity Low_complexity 4 148 0 5 1303 1122 55 176 0 chr11 94215171 94215336 -27628520 + B2_Mm2 SINE B2 1 194 -1 5 1303 759 137 0 0 chr11 94215336 94215460 -27628396 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 5 1303 242 315 26 18 chr11 94215751 94215864 -27627992 - L2 LINE L2 -2406 1013 900 5 1303 235 294 93 47 chr11 94215901 94216051 -27627805 + L2c LINE L2 2991 3147 -240 5 1303 216 0 0 0 chr11 94216200 94216224 -27627632 + (TGGA)n Simple_repeat Simple_repeat 3 26 0 5 1303 814 143 0 0 chr11 94216507 94216626 -27627230 - B1_Mus2 SINE Alu 0 147 29 5 1303 447 300 87 0 chr11 94216771 94216921 -27626935 - MER5A1 DNA MER1_type -2 164 2 5 1303 423 282 39 72 chr11 94216921 94217037 -27626819 + MER5A1 DNA MER1_type 51 161 -5 5 1303 440 313 15 0 chr11 94217223 94217357 -27626499 - MER2 DNA MER2_type -3 342 207 5 1303 238 196 0 0 chr11 94217426 94217482 -27626374 + T-rich Low_complexity Low_complexity 1 56 0 5 1303 561 227 0 40 chr11 94217528 94217652 -27626204 - PB1D7 SINE Alu 0 120 2 5 1303 567 96 0 0 chr11 94217904 94217987 -27625869 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 5 1303 439 186 40 0 chr11 94217987 94218076 -27625780 - ID4 SINE ID -54 98 7 5 1303 1203 232 72 11 chr11 94219439 94219701 -27624155 + B4A SINE B4 10 287 -5 5 1303 183 300 57 0 chr11 94219824 94219894 -27623962 - MIR SINE MIR -69 193 120 5 1303 198 0 0 0 chr11 94219996 94220018 -27623838 + (CCA)n Simple_repeat Simple_repeat 3 24 0 5 1303 294 94 0 45 chr11 94221407 94221474 -27622382 + (CAAAA)n Simple_repeat Simple_repeat 3 66 0 5 1303 198 136 0 0 chr11 94222029 94222073 -27621783 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1303 1093 89 14 0 chr11 94222073 94222219 -27621637 - B1_Mus1 SINE Alu 0 148 1 5 1303 825 285 48 63 chr11 94223337 94223752 -27620104 + L1MB2 LINE L1 5737 6145 -26 5 1303 397 241 9 61 chr11 94223806 94223921 -27619935 + RSINE1 SINE B4 5 113 -52 5 1303 460 296 161 10 chr11 94224031 94224236 -27619620 + L2a LINE L2 3191 3426 0 5 1303 1329 87 38 5 chr11 94224279 94224465 -27619391 + B2_Mm2 SINE B2 1 192 -3 5 1303 464 161 95 21 chr11 94227021 94227116 -27616740 + B1_Mur4 SINE Alu 45 146 -4 5 1303 243 306 0 84 chr11 94227025 94227132 -27616724 + MT2B LTR ERVL 205 302 -299 5 1303 193 335 52 33 chr11 94227189 94227402 -27616454 - L2c LINE L2 -125 3262 3046 5 1303 2161 135 49 22 chr11 94227496 94227817 -27616039 + ORR1C2 LTR MaLR 3 325 -59 5 1303 3280 40 0 22 chr11 94227817 94228225 -27615631 - L1Md_F2 LINE L1 0 6582 6184 5 1303 2161 135 49 22 chr11 94228225 94228273 -27615583 + ORR1C2 LTR MaLR 326 380 -4 5 1303 1370 67 83 0 chr11 94228382 94228408 -27615448 - B2_Mm2 SINE B2 0 195 170 5 1303 513 0 0 0 chr11 94228408 94228465 -27615391 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1303 1370 67 83 0 chr11 94228465 94228618 -27615238 - B2_Mm2 SINE B2 -26 169 2 5 1303 233 274 0 0 chr11 94229212 94229263 -27614593 + B1F SINE Alu 80 130 -19 5 1303 261 274 173 24 chr11 94230642 94230810 -27613046 + MLT1C LTR MaLR 44 236 -231 5 1303 380 23 0 0 chr11 94230813 94230857 -27612999 + (GAGAA)n Simple_repeat Simple_repeat 5 48 0 5 1303 874 129 11 33 chr11 94230863 94231047 -27612809 + GA-rich Low_complexity Low_complexity 1 180 0 5 1303 341 244 23 0 chr11 94231152 94231238 -27612618 + PB1D10 SINE Alu 10 97 -20 5 1303 252 0 0 0 chr11 94231245 94231273 -27612583 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1303 720 183 27 27 chr11 94231279 94231425 -27612431 + B1_Mur1 SINE Alu 3 148 -1 5 1303 226 313 136 45 chr11 94232574 94232728 -27611128 + MIRc SINE MIR 17 184 -84 5 1303 350 309 39 13 chr11 94237274 94237443 -27606413 - L1ME1 LINE L1 -27 6152 5970 5 1303 216 283 0 0 chr11 94237596 94237642 -27606214 + B4A SINE B4 34 79 -213 5 1303 433 224 18 18 chr11 94237742 94237851 -27606005 + B4A SINE B4 122 230 -62 5 1303 449 241 106 35 chr11 94237851 94237993 -27605863 + RSINE1 SINE B4 3 154 -11 5 1303 438 20 0 0 chr11 94238000 94238051 -27605805 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1303 228 125 31 15 chr11 94238103 94238168 -27605688 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1303 250 173 39 0 chr11 94238219 94238271 -27605585 + CT-rich Low_complexity Low_complexity 3 56 0 5 1303 417 270 24 98 chr11 94238320 94238443 -27605413 - B4 SINE B4 -4 288 175 5 1303 486 183 36 24 chr11 94238468 94238636 -27605220 + (TATG)n Simple_repeat Simple_repeat 2 171 0 5 1303 300 125 0 59 chr11 94238653 94238704 -27605152 + HAL1-3A_ME LINE L1 1975 2022 -836 5 1303 2050 174 100 39 chr11 94238781 94239200 -27604656 + RLTR20A LTR ERVK 1 439 -102 5 1303 342 0 0 0 chr11 94239200 94239238 -27604618 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1303 2050 174 100 39 chr11 94239238 94239328 -27604528 + RLTR20A LTR ERVK 440 540 -1 5 1303 361 278 0 179 chr11 94239986 94240126 -27603730 + B4 SINE B4 174 288 -4 5 1303 993 108 6 12 chr11 94240199 94240368 -27603488 + (GGA)n Simple_repeat Simple_repeat 2 169 0 6 162 1165 144 118 5 chr11 94240740 94240943 -27602913 - URR1A DNA MER1_type 0 226 1 6 1304 195 42 0 0 chr11 94241267 94241291 -27602565 + (ATG)n Simple_repeat Simple_repeat 3 26 0 6 1304 302 363 134 0 chr11 94241439 94241662 -27602194 + L2b LINE L2 2145 2397 -1022 6 1304 1227 48 0 0 chr11 94241690 94241835 -27602021 - B1_Mus1 SINE Alu -2 146 2 6 1304 298 271 74 54 chr11 94241890 94242038 -27601818 + L2b LINE L2 2930 3080 -295 6 1304 387 0 0 0 chr11 94242112 94242155 -27601701 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1304 203 262 0 0 chr11 94242974 94243016 -27600840 + polypyrimidine Low_complexity Low_complexity 3 44 0 6 1304 295 266 25 25 chr11 94243054 94243135 -27600721 - PB1D10 SINE Alu -35 82 2 6 1304 250 340 12 102 chr11 94243135 94243232 -27600624 - ID SINE ID -141 83 2 6 1304 461 273 27 0 chr11 94243334 94243444 -27600412 - PB1D10 SINE Alu -1 116 4 6 1304 565 304 86 60 chr11 94244023 94244292 -27599564 + B4 SINE B4 1 276 -16 6 1304 279 0 0 0 chr11 94244303 94244334 -27599522 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1304 441 282 0 8 chr11 94244461 94244579 -27599277 + RSINE1 SINE B4 42 158 -7 6 1304 244 278 0 0 chr11 94244643 94244697 -27599159 - ID4_ SINE ID -24 59 6 6 1304 233 330 0 11 chr11 94244706 94244801 -27599055 - PB1D10 SINE Alu 0 117 24 6 1304 440 273 0 9 chr11 94245407 94245518 -27598338 - ID_B1 SINE B4 -1 223 114 6 1304 262 286 39 0 chr11 94245455 94245532 -27598324 - PB1D7 SINE Alu -22 98 19 6 1304 186 303 45 18 chr11 94246051 94246162 -27597694 + L2 LINE L2 2525 2638 -781 6 1304 217 152 0 42 chr11 94246222 94246270 -27597586 + PB1D10 SINE Alu 69 114 -3 6 1304 1443 80 5 11 chr11 94248528 94248717 -27595139 - B2_Mm2 SINE B2 -7 188 1 6 1304 483 159 101 1 chr11 94248721 94248821 -27595035 - B1_Mur4 SINE Alu -1 116 2 6 1304 656 265 51 51 chr11 94248833 94249028 -27594828 - B3A SINE B2 -3 195 1 6 1304 617 267 137 10 chr11 94249030 94249227 -27594629 - ID_B1 SINE B4 -2 222 1 6 1304 469 255 0 19 chr11 94249227 94249331 -27594525 - PB1D7 SINE Alu -1 119 18 6 1304 1004 135 13 7 chr11 94250629 94250778 -27593078 - B1_Mur4 SINE Alu 0 150 1 6 1304 597 272 29 0 chr11 94250778 94250914 -27592942 - ID_B1 SINE B4 -4 220 81 6 1304 357 252 25 75 chr11 94251332 94251452 -27592404 - MIRc SINE MIR -51 217 104 6 1304 207 0 0 0 chr11 94252295 94252318 -27591538 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1304 531 269 39 77 chr11 94252544 94252725 -27591131 - ID_B1 SINE B4 -1 223 50 6 1304 254 275 29 0 chr11 94253195 94253264 -27590592 - ID4 SINE ID -8 75 5 6 1304 180 281 15 30 chr11 94253320 94253386 -27590470 + MIR3 SINE MIR 92 156 -52 6 1304 1067 14 0 28 chr11 94253403 94253548 -27590308 + (TCTCC)n Simple_repeat Simple_repeat 2 142 0 6 1304 209 33 33 0 chr11 94254890 94254920 -27588936 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1304 288 0 0 0 chr11 94255027 94255059 -27588797 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1304 1126 75 0 33 chr11 94255059 94255211 -27588645 - B1_Mus2 SINE Alu 0 147 1 6 1304 860 142 0 0 chr11 94255224 94255358 -27588498 - B1_Mus1 SINE Alu 0 148 15 6 1304 391 219 16 88 chr11 94255269 94255394 -27588462 - MT2B LTR ERVL -344 257 142 6 1304 333 0 0 0 chr11 94255538 94255575 -27588281 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1304 804 256 72 106 chr11 94256573 94257044 -27586812 + RLTR12B LTR ERVK 41 495 -33 6 1304 232 372 12 55 chr11 94257399 94257564 -27586292 - YREP_Mm Unknown Unknown -1474 338 181 6 1304 601 277 7 0 chr11 94257428 94257569 -27586287 + ID_B1 SINE B4 83 224 0 6 1304 266 322 98 8 chr11 94257592 94257714 -27586142 + L2b LINE L2 3241 3373 -2 6 1304 315 318 57 45 chr11 94258154 94258529 -27585327 - ETnERV2-int LTR ERVK -1668 5738 5078 6 1304 772 168 7 14 chr11 94258948 94259087 -27584769 + B1_Mus2 SINE Alu 10 147 0 6 1304 881 128 6 108 chr11 94259111 94259278 -27584578 + B1_Mur4 SINE Alu 1 150 0 6 1304 232 132 0 105 chr11 94259278 94259354 -27584502 + A-rich Low_complexity Low_complexity 4 71 0 6 1304 1046 81 0 36 chr11 94259903 94260070 -27583786 + B2_Mm2 SINE B2 1 161 -34 6 1304 249 33 0 0 chr11 94260071 94260101 -27583755 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1304 27 49 0 0 chr11 94260771 94260812 -27583044 + AT_rich Low_complexity Low_complexity 1 41 0 6 1304 430 17 17 17 chr11 94260833 94260893 -27582963 + (TTA)n Simple_repeat Simple_repeat 3 62 0 6 1304 783 209 0 0 chr11 94260898 94261037 -27582819 + B1_Mus1 SINE Alu 2 140 -8 6 1304 186 43 0 0 chr11 94261039 94261062 -27582794 + (CAT)n Simple_repeat Simple_repeat 1 23 0 6 1304 2314 151 32 7 chr11 94262532 94262938 -27580918 - MTC LTR MaLR -5 416 1 6 1304 1453 75 5 11 chr11 94263568 94263757 -27580099 + B2_Mm1a SINE B2 1 188 -5 6 1304 318 352 134 65 chr11 94264485 94264949 -27578907 - RLTR40 LTR ERVK -247 570 75 6 1304 489 34 0 0 chr11 94267097 94267156 -27576700 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1304 359 241 49 49 chr11 94267373 94267387 -27576469 - B1F SINE Alu 0 149 28 6 1304 446 236 19 19 chr11 94267387 94267495 -27576361 - ID_B1 SINE B4 -8 216 109 6 1304 648 38 0 0 chr11 94268147 94268226 -27575630 + (GA)n Simple_repeat Simple_repeat 1 79 0 6 1304 253 299 15 15 chr11 94268525 94268593 -27575263 + ID4_ SINE ID 2 69 -14 6 1304 258 105 0 0 chr11 94268610 94268648 -27575208 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1304 237 119 0 0 chr11 94269736 94269778 -27574078 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1304 348 64 0 0 chr11 94276518 94276565 -27567291 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1304 272 336 14 14 chr11 94276572 94276720 -27567136 + GA-rich Low_complexity Low_complexity 6 153 0 6 1304 332 307 218 17 chr11 94278861 94279040 -27564816 - MIR SINE MIR -23 239 25 6 1304 702 0 0 0 chr11 94279258 94279336 -27564520 + (TC)n Simple_repeat Simple_repeat 2 79 0 6 1304 242 337 60 0 chr11 94279680 94279763 -27564093 - MIR3 SINE MIR -12 196 109 6 1304 195 302 29 68 chr11 94279814 94279917 -27563939 + L2c LINE L2 3281 3379 -8 6 1304 326 322 92 15 chr11 94279875 94280070 -27563786 + MIRb SINE MIR 18 237 -31 6 1304 231 36 0 0 chr11 94281803 94281831 -27562025 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 6 1304 367 328 107 32 chr11 94283894 94284146 -27559710 + Charlie19a DNA Charlie 1 271 -115 6 1304 180 97 0 0 chr11 94286026 94286057 -27557799 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 6 1304 407 223 124 51 chr11 94286314 94286334 -27557522 - B1F SINE Alu 0 149 133 6 1304 234 0 0 0 chr11 94286334 94286360 -27557496 + (G)n Simple_repeat Simple_repeat 1 26 0 6 1304 407 223 124 51 chr11 94286360 94286476 -27557380 - B1F SINE Alu -17 132 5 6 1304 459 0 0 0 chr11 94286484 94286535 -27557321 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1304 299 290 184 17 chr11 94287458 94287637 -27556219 - MER102a DNA MER1_type -94 236 28 6 1304 280 350 96 27 chr11 94288250 94288438 -27555418 - MIRc SINE MIR -59 209 6 6 1304 260 327 22 22 chr11 94289220 94289357 -27554499 - MIR SINE MIR -74 194 47 6 1304 24 0 0 0 chr11 94290156 94290180 -27553676 + GC_rich Low_complexity Low_complexity 1 24 0 6 1304 396 0 0 0 chr11 94291830 94291874 -27551982 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1304 306 0 0 0 chr11 94292356 94292390 -27551466 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1304 279 0 0 0 chr11 94293096 94293127 -27550729 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1304 315 145 0 0 chr11 94293206 94293275 -27550581 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1304 288 0 0 0 chr11 94293296 94293328 -27550528 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1304 342 0 0 0 chr11 94293328 94293365 -27550491 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1304 636 14 0 0 chr11 94294802 94294875 -27548981 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1304 346 311 33 8 chr11 94295572 94295692 -27548164 + MIR SINE MIR 32 154 -108 6 1304 1270 184 9 5 chr11 94295788 94296012 -27547844 + URR1B DNA MER1_type 1 225 0 6 1304 250 224 0 65 chr11 94296032 94296094 -27547762 + B1F2 SINE Alu 1 58 -91 6 1304 339 315 75 88 chr11 94296093 94296253 -27547603 - B4 SINE B4 -126 166 9 6 1304 847 212 158 15 chr11 94296261 94296534 -27547322 + L1MA8 LINE L1 5416 5727 -564 6 1304 582 248 40 33 chr11 94296564 94296714 -27547142 + B3A SINE B2 1 151 -47 6 1304 1248 76 3 10 chr11 94296719 94297013 -27546843 + (TC)n Simple_repeat Simple_repeat 1 291 0 6 1304 235 202 22 0 chr11 94297014 94297103 -27546753 + CT-rich Low_complexity Low_complexity 1 91 0 6 1304 1210 243 8 19 chr11 94297227 94297491 -27546365 + B4A SINE B4 9 269 -23 6 1304 558 63 0 0 chr11 94297495 94297574 -27546282 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1304 499 229 48 108 chr11 94297599 94297849 -27546007 + L1MA8 LINE L1 5814 6048 -243 6 1304 967 99 0 14 chr11 94297984 94298128 -27545728 - B1_Mus1 SINE Alu -1 147 6 6 1304 335 121 17 0 chr11 94298129 94298187 -27545669 + (CCA)n Simple_repeat Simple_repeat 2 60 0 6 1304 329 257 105 0 chr11 94298187 94298339 -27545517 + L1MA8 LINE L1 6103 6270 -21 6 1304 756 149 52 0 chr11 94298378 94298512 -27545344 + B1_Mur2 SINE Alu 9 149 0 6 1304 263 272 39 98 chr11 94298517 94298619 -27545237 + MT2B LTR ERVL 156 251 -350 6 1304 483 209 18 45 chr11 94298533 94298643 -27545213 + PB1D10 SINE Alu 11 117 0 7 1304 194 266 57 36 chr11 94298754 94298847 -27545009 + MIR SINE MIR 107 195 -67 7 1304 548 289 0 0 chr11 94301433 94301547 -27542309 - PB1D10 SINE Alu -2 115 2 7 1304 197 336 67 9 chr11 94301576 94301681 -27542175 - MIRc SINE MIR -87 181 71 7 1304 432 0 0 0 chr11 94306491 94306539 -27537317 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1304 267 229 159 71 chr11 94307848 94307961 -27535895 + MT2B LTR ERVL 142 264 -337 7 1304 422 174 257 0 chr11 94307878 94307987 -27535869 + B1_Mm SINE Alu 11 147 0 7 1304 197 33 33 0 chr11 94308288 94308318 -27535538 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1304 229 222 0 69 chr11 94308331 94308389 -27535467 - PB1D10 SINE Alu -17 103 50 7 1304 534 104 31 0 chr11 94308803 94308899 -27534957 + (GGA)n Simple_repeat Simple_repeat 1 99 0 7 1304 1113 103 0 0 chr11 94308902 94309077 -27534779 + (GAA)n Simple_repeat Simple_repeat 1 175 0 7 1304 1110 73 0 0 chr11 94309336 94309472 -27534384 + B1_Mm SINE Alu 2 137 -10 7 1304 442 0 17 17 chr11 94309472 94309531 -27534325 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 7 1304 210 339 11 22 chr11 94310075 94310172 -27533684 + MIR SINE MIR 29 125 -143 7 1304 351 98 0 0 chr11 94310488 94310549 -27533307 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1304 235 359 48 0 chr11 94310676 94310821 -27533035 - L2 LINE L2 -563 2856 2705 7 1304 444 279 61 48 chr11 94311437 94311584 -27532272 + B1F SINE Alu 1 149 0 7 1304 594 280 71 45 chr11 94311601 94311680 -27532176 + ID_B1 SINE B4 1 206 -86 7 1304 609 259 7 0 chr11 94311680 94311819 -27532037 + B1F1 SINE Alu 10 149 0 7 1304 299 349 35 50 chr11 94311784 94311983 -27531873 + RMER21B LTR ERV1 550 745 -97 7 1304 298 379 58 10 chr11 94312575 94312783 -27531073 + L2 LINE L2 2369 2586 -833 7 1304 236 257 39 39 chr11 94313524 94313601 -27530255 + Charlie4z DNA MER1_type 71 147 -20 7 1304 216 0 0 0 chr11 94314161 94314185 -27529671 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1304 327 325 0 0 chr11 94314537 94314617 -27529239 - ID4_ SINE ID -2 81 2 7 1304 656 254 105 11 chr11 94314646 94314837 -27529019 + B3 SINE B2 3 211 -5 7 1304 204 40 0 0 chr11 94314852 94314877 -27528979 + (TTG)n Simple_repeat Simple_repeat 2 26 0 7 1304 270 280 158 21 chr11 94314877 94314966 -27528890 - PB1D10 SINE Alu -14 103 2 7 1304 732 203 9 0 chr11 94315051 94315386 -27528470 + (TGGA)n Simple_repeat Simple_repeat 1 338 0 7 1304 220 349 0 23 chr11 94315946 94316075 -27527781 + CT-rich Low_complexity Low_complexity 6 131 0 7 1304 201 286 68 41 chr11 94316536 94316609 -27527247 - L3 LINE CR1 -200 4308 4234 7 1304 471 206 91 52 chr11 94317657 94317811 -27526045 - L3 LINE CR1 -275 4214 4055 7 1304 204 336 63 9 chr11 94319524 94319635 -27524221 - MIR3 SINE MIR -40 168 52 7 1304 190 311 0 16 chr11 94319853 94319915 -27523941 + L2 LINE L2 226 286 -3133 7 1304 241 358 13 65 chr11 94320202 94320369 -27523487 - MIRm SINE MIR -113 163 2 7 1304 252 86 0 0 chr11 94320812 94320847 -27523009 + (TGG)n Simple_repeat Simple_repeat 2 36 0 7 1304 231 278 61 24 chr11 94321480 94321584 -27522272 + MIRc SINE MIR 56 153 -123 7 1304 272 241 0 0 chr11 94322551 94322605 -27521251 + MIR SINE MIR 205 258 -4 7 1304 201 260 40 0 chr11 94322687 94322737 -27521119 - MIR3 SINE MIR -3 205 154 7 1304 243 0 0 0 chr11 94322939 94322966 -27520890 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1304 196 326 54 33 chr11 94322997 94323089 -27520767 - MIRm SINE MIR -141 135 42 7 1304 277 218 0 0 chr11 94323861 94323916 -27519940 - ID SINE ID -168 56 2 7 1304 230 236 0 14 chr11 94323931 94324004 -27519852 + CT-rich Low_complexity Low_complexity 2 73 0 7 1304 1242 48 0 7 chr11 94324005 94324153 -27519703 - B1_Mm SINE Alu 0 147 1 7 1304 213 214 71 0 chr11 94324159 94324215 -27519641 - B1F1 SINE Alu -5 144 85 7 1304 399 41 0 0 chr11 94324218 94324267 -27519589 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1304 539 282 30 0 chr11 94324267 94324398 -27519458 - B1_Mur1 SINE Alu 0 149 15 7 1304 480 299 22 7 chr11 94324415 94324550 -27519306 + MER5B DNA MER1_type 39 175 -3 7 1304 501 333 71 26 chr11 94324949 94325203 -27518653 - MIRc SINE MIR -2 260 8 7 1304 411 21 0 0 chr11 94326005 94326053 -27517803 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1304 423 0 0 0 chr11 94326053 94326099 -27517757 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1304 291 28 0 0 chr11 94327393 94327429 -27516427 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1304 222 37 0 0 chr11 94327628 94327655 -27516201 + (CCA)n Simple_repeat Simple_repeat 2 28 0 7 1304 199 394 29 9 chr11 94327673 94327778 -27516078 + MIRc SINE MIR 115 221 -47 7 1304 270 271 14 0 chr11 94327811 94327881 -27515975 + MIRc SINE MIR 168 238 -30 7 1304 287 302 105 71 chr11 94327873 94327980 -27515876 - MIRc SINE MIR -14 254 143 7 1304 232 27 54 0 chr11 94327980 94328017 -27515839 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 7 1304 287 302 105 71 chr11 94328017 94328148 -27515708 - MIRc SINE MIR -126 142 8 7 1304 349 288 86 40 chr11 94328963 94329115 -27514741 + B4A SINE B4 66 224 -68 7 1304 721 116 116 0 chr11 94328997 94329118 -27514738 + B1_Mus1 SINE Alu 14 148 0 7 1304 200 29 83 28 chr11 94330989 94331025 -27512831 + (CAGAGA)n Simple_repeat Simple_repeat 1 38 0 7 1304 374 69 0 17 chr11 94331097 94331156 -27512700 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1304 990 63 0 0 chr11 94331492 94331635 -27512221 + (TC)n Simple_repeat Simple_repeat 1 143 0 7 1304 223 337 0 0 chr11 94331822 94331905 -27511951 + C-rich Low_complexity Low_complexity 1 83 0 7 1304 486 0 0 0 chr11 94332199 94332253 -27511603 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1304 351 0 0 0 chr11 94333091 94333130 -27510726 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 7 1304 272 266 0 0 chr11 94335566 94335630 -27508226 + (CCG)n Simple_repeat Simple_repeat 1 64 0 7 1304 525 32 0 0 chr11 94338003 94338066 -27505790 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1304 461 123 28 9 chr11 94341008 94341115 -27502741 + (CA)n Simple_repeat Simple_repeat 1 109 0 7 1304 495 0 0 0 chr11 94341357 94341412 -27502444 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1304 309 51 0 0 chr11 94346934 94346973 -27496883 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1304 220 233 14 14 chr11 94346978 94347052 -27496804 + GA-rich Low_complexity Low_complexity 1 74 0 7 1304 229 323 88 0 chr11 94348061 94348257 -27495599 - L2b LINE L2 -223 3152 2932 7 1304 2348 168 14 40 chr11 94348258 94348686 -27495170 - MTD LTR MaLR 0 419 3 7 1304 813 120 23 0 chr11 94348876 94349009 -27494847 - B1_Mur4 SINE Alu -13 137 2 7 1304 279 264 44 15 chr11 94349489 94349621 -27494235 + PB1D10 SINE Alu 1 140 -9 7 1304 569 321 78 81 chr11 94349633 94349842 -27494014 + B4 SINE B4 1 204 -88 7 1304 341 232 128 67 chr11 94349842 94350022 -27493834 + B2_Mm2 SINE B2 3 193 -2 7 1304 569 321 78 81 chr11 94350022 94350083 -27493773 + B4 SINE B4 205 270 -22 7 1304 258 56 0 0 chr11 94350083 94350119 -27493737 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1304 201 214 55 93 chr11 94350854 94350940 -27492916 - MIR SINE MIR -79 183 90 7 1304 277 327 61 30 chr11 94351604 94351740 -27492116 + MIR SINE MIR 35 174 -94 7 1304 387 0 0 0 chr11 94351780 94351823 -27492033 + (TAA)n Simple_repeat Simple_repeat 1 43 0 7 1304 418 192 0 13 chr11 94351827 94351906 -27491950 - PB1D10 SINE Alu -32 85 8 7 1304 238 346 0 13 chr11 94351916 94351995 -27491861 + MER45A DNA Tip100 92 169 -9 7 1304 519 287 98 39 chr11 94354382 94354585 -27489271 - MIRc SINE MIR -5 263 49 7 1304 316 275 11 0 chr11 94357130 94357221 -27486635 - MIRb SINE MIR -21 247 156 7 1304 263 274 15 50 chr11 94358741 94358841 -27485015 - MIRc SINE MIR -92 116 22 7 1304 182 257 0 136 chr11 94358853 94358934 -27484922 + L2a LINE L2 3263 3332 -94 7 1304 295 284 40 0 chr11 94361978 94362052 -27481804 - B1F SINE Alu -33 116 40 7 1304 419 333 128 43 chr11 94363552 94363903 -27479953 + MLT1A1 LTR MaLR 28 408 0 7 1304 655 71 20 0 chr11 94364254 94364352 -27479504 + (TC)n Simple_repeat Simple_repeat 1 100 0 7 1304 390 91 0 0 chr11 94366529 94366584 -27477272 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1304 22 0 0 0 chr11 94366584 94366606 -27477250 + AT_rich Low_complexity Low_complexity 1 22 0 7 1304 209 108 0 26 chr11 94367327 94367365 -27476491 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 7 1304 301 273 140 45 chr11 94367481 94367638 -27476218 + MIR SINE MIR 70 241 -21 7 1304 490 212 106 0 chr11 94369960 94370092 -27473764 + B4A SINE B4 116 261 -31 7 1304 186 103 0 0 chr11 94370131 94370160 -27473696 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1304 699 179 0 107 chr11 94370222 94370372 -27473484 - B1_Mur4 SINE Alu -15 135 2 7 20 363 308 50 19 chr11 94371821 94371980 -27471876 - Charlie5 DNA MER1_type -6 2618 2455 7 1305 2503 205 47 99 chr11 94372278 94372923 -27470933 + RMER19C LTR ERVK 1 611 0 7 1305 813 49 0 0 chr11 94374655 94374757 -27469099 + (CA)n Simple_repeat Simple_repeat 2 103 0 7 1305 241 47 47 0 chr11 94375697 94375740 -27468116 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 1305 488 266 73 0 chr11 94376692 94376816 -27467040 - B1_Mur1 SINE Alu -10 139 7 7 1305 291 275 0 36 chr11 94376753 94376836 -27467020 - MT2B LTR ERVL -370 231 152 7 1305 800 177 7 0 chr11 94376835 94376976 -27466880 - B1_Mus1 SINE Alu -1 147 6 7 1305 351 319 45 77 chr11 94376840 94376996 -27466860 - B4 SINE B4 -72 220 70 8 1305 568 221 108 16 chr11 94376992 94377121 -27466735 - ID_B1 SINE B4 -1 223 83 8 1305 619 193 0 0 chr11 94377132 94377241 -27466615 - B1_Mur1 SINE Alu 0 149 41 8 1305 369 287 20 10 chr11 94377279 94377381 -27466475 + B3A SINE B2 31 133 -65 8 1305 466 238 24 24 chr11 94377418 94377543 -27466313 + B1_Mus1 SINE Alu 24 148 0 8 1305 373 197 0 13 chr11 94378522 94378599 -27465257 - PB1D10 SINE Alu -21 96 21 8 1305 763 179 0 0 chr11 94378708 94378831 -27465025 + B1_Mur4 SINE Alu 3 125 -25 8 1305 1078 113 17 0 chr11 94378831 94379008 -27464848 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1305 381 246 15 99 chr11 94379445 94379576 -27464280 - PB1D7 SINE Alu 0 120 1 8 1305 746 118 5 38 chr11 94379925 94380110 -27463746 + (TA)n Simple_repeat Simple_repeat 2 180 0 8 1305 473 0 18 0 chr11 94381172 94381229 -27462627 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1305 243 114 0 0 chr11 94381291 94381335 -27462521 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1305 204 40 0 0 chr11 94381604 94381629 -27462227 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1305 345 206 29 14 chr11 94381866 94381935 -27461921 + ID4_ SINE ID 2 71 -12 8 1305 378 276 13 0 chr11 94383861 94383937 -27459919 - ID4 SINE ID -3 80 4 8 1305 496 239 0 0 chr11 94384106 94384215 -27459641 + ID_B1 SINE B4 116 224 0 8 1305 323 140 18 0 chr11 94384528 94384585 -27459271 + L1MA7 LINE L1 6228 6285 -6 8 1305 508 206 46 38 chr11 94384596 94384727 -27459129 + B1F SINE Alu 18 149 0 8 1305 241 250 132 0 chr11 94385423 94385499 -27458357 - L1MB7 LINE L1 -178 6006 5921 8 1305 231 200 92 0 chr11 94385537 94385602 -27458254 - L1M3 LINE L1 -355 5825 5755 8 1305 327 49 0 0 chr11 94385663 94385704 -27458152 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 8 1305 1723 243 178 42 chr11 94385704 94386300 -27457556 - Lx6 LINE L1 -23 7437 6761 8 1305 330 26 0 0 chr11 94386303 94386342 -27457514 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 8 1305 940 145 7 27 chr11 94386364 94386375 -27457481 - B1_Mus1 SINE Alu -1 147 140 8 1305 180 0 0 0 chr11 94386375 94386395 -27457461 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1305 940 145 7 27 chr11 94386395 94386532 -27457324 - B1_Mus1 SINE Alu -9 139 2 8 1305 189 0 0 0 chr11 94386589 94386610 -27457246 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 8 1305 1600 47 0 0 chr11 94386610 94386802 -27457054 - B2_Mm1a SINE B2 0 193 2 8 1305 732 201 7 40 chr11 94386807 94386957 -27456899 - B1_Mus1 SINE Alu -3 145 1 8 1305 741 222 6 30 chr11 94386972 94387139 -27456717 - RSINE1 SINE B4 0 165 3 8 1305 460 237 84 56 chr11 94388103 94388246 -27455610 - B1F1 SINE Alu 0 149 3 8 1305 342 0 0 0 chr11 94388660 94388698 -27455158 + (CCCCCA)n Simple_repeat Simple_repeat 5 42 0 8 1305 391 256 12 0 chr11 94389248 94389334 -27454522 + ID SINE ID 1 87 -137 8 1305 370 232 0 0 chr11 94389347 94389416 -27454440 + ID_B1 SINE B4 155 223 -1 8 1305 1347 95 6 3 chr11 94389434 94389792 -27454064 + (GAAA)n Simple_repeat Simple_repeat 1 358 0 8 1305 408 320 107 0 chr11 94389811 94389933 -27453923 + RSINE1 SINE B4 31 165 0 8 1305 579 174 33 50 chr11 94389973 94390094 -27453762 + PB1D9 SINE Alu 1 119 -1 8 1305 458 259 168 120 chr11 94390390 94390494 -27453362 + MLT1D LTR MaLR 37 107 -398 8 1305 1518 48 0 0 chr11 94390494 94390683 -27453173 - B2_Mm1t SINE B2 -3 190 2 8 1305 458 259 168 120 chr11 94390683 94390960 -27452896 + MLT1D LTR MaLR 108 436 -69 8 1305 548 288 6 19 chr11 94390988 94391144 -27452712 + ID_B1 SINE B4 70 223 -1 8 1305 545 234 68 32 chr11 94391159 94391349 -27452507 + B3A SINE B2 2 198 0 8 1305 1046 124 168 0 chr11 94391367 94391552 -27452304 + B3 SINE B2 1 216 0 8 1305 21 0 0 0 chr11 94391555 94391576 -27452280 + AT_rich Low_complexity Low_complexity 1 21 0 8 1305 827 293 31 4 chr11 94391615 94391875 -27451981 - L1MB5 LINE L1 -20 6154 5888 8 1305 441 0 0 0 chr11 94391938 94391987 -27451869 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1305 372 254 118 0 chr11 94391999 94392109 -27451747 - RSINE1 SINE B4 -32 133 11 8 1305 822 281 83 56 chr11 94392125 94392331 -27451525 - L1MB5 LINE L1 -355 5823 5608 8 1305 423 0 0 0 chr11 94392331 94392378 -27451478 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 8 1305 612 225 163 11 chr11 94392378 94392562 -27451294 - ID_B1 SINE B4 -11 213 2 8 1305 822 281 83 56 chr11 94392562 94392678 -27451178 - L1MB5 LINE L1 -571 5607 5492 8 1305 349 230 90 0 chr11 94392740 94392840 -27451016 - B1_Mus1 SINE Alu 0 148 40 8 1305 848 230 10 20 chr11 94392856 94393056 -27450800 - B3A SINE B2 0 198 1 8 1305 562 218 0 0 chr11 94393742 94393852 -27450004 + MER34 LTR ERV1 14 123 -419 8 1305 1109 62 14 0 chr11 94393855 94393999 -27449857 - B1_Mus1 SINE Alu 0 148 3 8 1305 220 227 58 43 chr11 94394031 94394100 -27449756 + ID2 SINE ID 2 71 -12 8 1305 310 266 102 41 chr11 94394123 94394221 -27449635 + PB1D10 SINE Alu 1 104 -13 8 1305 942 282 129 6 chr11 94394232 94394589 -27449267 + MER34 LTR ERV1 142 542 0 8 1305 347 256 33 11 chr11 94395326 94395417 -27448439 + PB1D9 SINE Alu 27 119 -1 8 1305 629 274 14 45 chr11 94395556 94395778 -27448078 + ID_B1 SINE B4 1 215 -9 8 1305 710 263 20 15 chr11 94396177 94396374 -27447482 + B3A SINE B2 1 198 0 8 1305 213 121 0 0 chr11 94396378 94396411 -27447445 + (GGA)n Simple_repeat Simple_repeat 3 35 0 8 1305 1037 64 50 0 chr11 94396480 94396620 -27447236 + B1_Mus2 SINE Alu 1 147 0 8 1305 777 76 0 0 chr11 94397398 94397503 -27446353 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 8 1305 329 265 188 19 chr11 94397517 94397671 -27446185 + HAL1b LINE L1 1771 1950 -59 8 1305 224 77 0 25 chr11 94397710 94397750 -27446106 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1305 291 269 75 8 chr11 94398384 94398504 -27445352 + L1MC LINE L1 4435 4562 -1584 8 1305 340 253 223 0 chr11 94398522 94398688 -27445168 - ID_B1 SINE B4 -19 205 3 8 1305 330 243 14 0 chr11 94398717 94398787 -27445069 - ID4_ SINE ID -1 82 12 8 1305 414 282 83 58 chr11 94399240 94399436 -27444420 + MER2 DNA MER2_type 15 216 -129 8 1305 564 262 104 0 chr11 94399436 94399619 -27444237 - B3 SINE B2 -11 205 4 8 1305 414 282 83 58 chr11 94399619 94399663 -27444193 + MER2 DNA MER2_type 217 261 -84 8 1305 450 238 29 0 chr11 94399661 94399766 -27444090 - RSINE1 SINE B4 -55 110 3 8 1305 318 248 109 36 chr11 94399836 94399974 -27443882 + B1F1 SINE Alu 2 149 0 8 1305 216 208 64 77 chr11 94400107 94400185 -27443671 - MER5A DNA MER1_type -35 154 78 8 1305 262 281 125 0 chr11 94400626 94400722 -27443134 + L2b LINE L2 3263 3370 -5 8 1305 321 26 0 0 chr11 94400999 94401037 -27442819 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1305 21 0 0 0 chr11 94401447 94401468 -27442388 + GC_rich Low_complexity Low_complexity 1 21 0 8 1305 225 273 20 10 chr11 94401619 94401719 -27442137 + L1MC4 LINE L1 7100 7200 -842 8 1305 850 157 21 58 chr11 94401725 94401900 -27441956 + B2_Mm2 SINE B2 3 173 -22 8 1305 862 162 70 38 chr11 94401900 94402086 -27441770 + B2_Mm2 SINE B2 1 192 -3 8 1305 850 157 21 58 chr11 94402086 94402100 -27441756 + B2_Mm2 SINE B2 174 185 -10 8 1305 657 201 141 16 chr11 94402246 94402438 -27441418 + B3 SINE B2 1 216 0 8 1305 21 0 0 0 chr11 94402440 94402461 -27441395 + AT_rich Low_complexity Low_complexity 1 21 0 8 1305 535 229 141 30 chr11 94402473 94402671 -27441185 + ID_B1 SINE B4 2 221 -3 8 1305 525 310 39 22 chr11 94402697 94402875 -27440981 + B3A SINE B2 1 181 -17 8 1305 189 0 0 0 chr11 94402878 94402899 -27440957 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1305 706 186 21 28 chr11 94402912 94403056 -27440800 + B1_Mus1 SINE Alu 5 147 -1 8 1305 1078 192 59 0 chr11 94403194 94403397 -27440459 - B3 SINE B2 0 216 2 8 1305 447 19 0 0 chr11 94404332 94404384 -27439472 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1305 244 254 73 0 chr11 94404403 94404458 -27439398 + BC1_Mm scRNA scRNA 14 72 -80 8 1305 208 268 0 0 chr11 94405310 94405366 -27438490 - MIRc SINE MIR -132 136 81 8 1305 184 172 35 0 chr11 94405656 94405714 -27438142 + C-rich Low_complexity Low_complexity 4 63 0 8 1305 479 216 34 25 chr11 94406277 94406396 -27437460 - B1F1 SINE Alu 0 149 30 8 1305 188 308 0 0 chr11 94406420 94406472 -27437384 - MIRc SINE MIR -112 156 105 8 1305 235 82 68 34 chr11 94406541 94406629 -27437227 + (TTATA)n Simple_repeat Simple_repeat 5 95 0 8 1305 27 49 0 0 chr11 94406694 94406735 -27437121 + AT_rich Low_complexity Low_complexity 1 41 0 8 1305 539 266 72 0 chr11 94406735 94406874 -27436982 - RSINE1 SINE B4 -14 151 3 8 1305 1351 75 5 5 chr11 94406890 94407078 -27436778 - B2_Mm1a SINE B2 -4 189 2 8 1305 475 250 0 25 chr11 94407185 94407304 -27436552 - PB1D7 SINE Alu -2 118 3 8 1305 541 201 66 15 chr11 94407354 94407490 -27436366 + B1F2 SINE Alu 1 143 -6 8 1305 991 95 13 20 chr11 94407496 94407646 -27436210 + B1_Mur4 SINE Alu 1 149 -1 8 1305 306 0 0 0 chr11 94407705 94407739 -27436117 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1305 248 280 171 14 chr11 94408021 94408162 -27435694 + L2b LINE L2 3032 3201 -186 8 1305 448 315 78 116 chr11 94408310 94408345 -27435511 - B4A SINE B4 0 292 271 8 1305 357 43 0 0 chr11 94408345 94408392 -27435464 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1305 448 315 78 116 chr11 94408392 94408418 -27435438 - B4A SINE B4 -22 270 247 8 1305 665 206 107 17 chr11 94408418 94408596 -27435260 - B2_Mm2 SINE B2 0 195 2 8 1305 448 315 78 116 chr11 94408596 94408827 -27435029 - B4A SINE B4 -46 246 10 8 1305 523 191 57 0 chr11 94408900 94409005 -27434851 + PB1D7 SINE Alu 1 111 -9 8 1305 191 36 36 0 chr11 94409008 94409036 -27434820 + (TAA)n Simple_repeat Simple_repeat 3 31 0 9 1305 764 261 64 5 chr11 94409040 94409244 -27434612 + ID_B1 SINE B4 4 219 -5 9 1305 210 71 0 0 chr11 94409253 94409281 -27434575 + (TAA)n Simple_repeat Simple_repeat 1 28 0 9 1305 448 187 122 0 chr11 94410984 94411091 -27432765 + PB1D7 SINE Alu 1 120 0 9 1305 189 0 0 0 chr11 94411300 94411321 -27432535 + (CATA)n Simple_repeat Simple_repeat 2 22 0 9 1305 294 29 0 0 chr11 94411351 94411386 -27432470 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1305 446 202 21 73 chr11 94411387 94411541 -27432315 + B2_Mm2 SINE B2 50 198 0 9 1305 529 155 257 18 chr11 94411620 94411791 -27432065 + B3 SINE B2 2 213 -3 9 1305 984 264 154 14 chr11 94412026 94412384 -27431472 + MER70A LTR ERVL 63 470 -2 9 1305 203 175 0 0 chr11 94412527 94412567 -27431289 + T-rich Low_complexity Low_complexity 1 40 0 9 1305 447 314 50 31 chr11 94412567 94412728 -27431128 - RSINE1 SINE B4 0 165 2 9 1305 2055 118 12 6 chr11 94412755 94413094 -27430762 + ORR1A2 LTR MaLR 29 384 0 9 1305 10297 100 136 4 chr11 94413094 94414827 -27429029 + ORR1A2-int LTR MaLR 1 1962 -1 9 1305 2059 107 62 0 chr11 94414828 94415136 -27428720 + ORR1A2 LTR MaLR 1 327 0 9 1305 953 135 12 25 chr11 94415207 94415367 -27428489 + B2_Mm2 SINE B2 5 162 -33 9 1305 180 0 0 0 chr11 94415367 94415387 -27428469 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1305 248 77 0 25 chr11 94415446 94415486 -27428370 + (TAA)n Simple_repeat Simple_repeat 2 40 0 9 1305 279 0 0 0 chr11 94415592 94415623 -27428233 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 9 1305 230 296 0 14 chr11 94415629 94415701 -27428155 + ID4 SINE ID 3 73 -10 9 1305 261 321 0 39 chr11 94415865 94415995 -27427861 + MER72B LTR ERV1 413 503 -265 9 1305 1282 106 16 0 chr11 94416050 94416238 -27427618 - B2_Mm2 SINE B2 -3 192 2 9 1305 1715 121 8 163 chr11 94416430 94416804 -27427052 - ORR1A2 LTR MaLR -8 319 3 9 1305 270 365 0 10 chr11 94416805 94416902 -27426954 - B1F1 SINE Alu -52 97 2 9 1305 814 155 0 14 chr11 94416971 94417115 -27426741 - B1_Mm SINE Alu 0 147 6 9 1305 729 34 0 0 chr11 94417116 94417204 -27426652 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 9 1305 465 259 215 15 chr11 94417212 94417378 -27426478 + B3 SINE B2 20 210 -6 9 1305 340 164 0 0 chr11 94417388 94417443 -27426413 + B1_Mur4 SINE Alu 1 55 -95 9 1305 685 72 0 0 chr11 94417532 94417629 -27426227 + B1_Mus2 SINE Alu 42 138 -9 9 1305 243 0 0 0 chr11 94417629 94417656 -27426200 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 9 1305 1380 94 0 5 chr11 94417663 94417856 -27426000 + B2_Mm2 SINE B2 2 193 -2 9 1305 753 230 102 0 chr11 94417859 94417885 -27425971 - B3 SINE B2 -10 206 181 9 1305 333 0 0 0 chr11 94417885 94417922 -27425934 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1305 753 230 102 0 chr11 94417922 94418082 -27425774 - B3 SINE B2 -36 180 2 9 1305 891 117 14 14 chr11 94418130 94418278 -27425578 - B1_Mur4 SINE Alu -2 148 1 9 1305 189 0 0 0 chr11 94418471 94418492 -27425364 + (G)n Simple_repeat Simple_repeat 1 21 0 9 1305 714 218 7 0 chr11 94418512 94418654 -27425202 - B3A SINE B2 -52 146 4 9 1305 429 224 94 29 chr11 94418845 94418983 -27424873 + B1F2 SINE Alu 1 147 -2 9 1305 202 102 41 0 chr11 94418983 94419026 -27424830 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 9 1305 282 223 112 41 chr11 94419716 94419814 -27424042 - MER81 DNA AcHobo 0 114 10 9 1305 1712 198 65 24 chr11 94420333 94420716 -27423140 + MTD LTR MaLR 7 405 -14 9 1305 269 229 11 88 chr11 94420987 94421078 -27422778 - L2a LINE L2 -1 3425 3342 9 1305 195 128 140 60 chr11 94421195 94421245 -27422611 + L2b LINE L2 3106 3159 -216 9 1305 452 222 0 100 chr11 94421468 94421578 -27422278 + BC1_Mm scRNA scRNA 1 99 -53 9 1305 222 37 0 0 chr11 94421578 94421605 -27422251 + (GGGGA)n Simple_repeat Simple_repeat 1 27 0 9 1305 368 309 65 47 chr11 94421801 94421971 -27421885 - ID_B1 SINE B4 -51 173 1 9 1305 217 291 24 183 chr11 94421971 94422056 -27421800 - B1F SINE Alu -6 143 70 9 1305 1149 43 0 0 chr11 94422056 94422194 -27421662 - B1_Mm SINE Alu -9 138 1 9 1305 217 291 24 183 chr11 94422194 94422272 -27421584 - B1F SINE Alu -80 69 6 9 1305 362 245 48 29 chr11 94422199 94422304 -27421552 - ID_B1 SINE B4 -63 161 55 9 1305 193 77 24 49 chr11 94422765 94422806 -27421050 + G-rich Low_complexity Low_complexity 1 40 0 9 1305 1257 57 102 6 chr11 94423101 94423259 -27420597 + B2_Mm2 SINE B2 2 177 -18 9 1305 243 0 0 0 chr11 94423259 94423286 -27420570 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1305 1257 57 102 6 chr11 94423286 94423303 -27420553 + B2_Mm2 SINE B2 178 194 -1 9 1305 200 208 57 0 chr11 94423933 94423986 -27419870 + (CACCC)n Simple_repeat Simple_repeat 3 58 0 9 1305 279 0 0 0 chr11 94424791 94424822 -27419034 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1305 1108 82 0 0 chr11 94428320 94428467 -27415389 + B1_Mus2 SINE Alu 1 147 0 9 1305 186 343 39 19 chr11 94428817 94428921 -27414935 + MIR3 SINE MIR 8 113 -95 9 1305 577 151 25 25 chr11 94430739 94430861 -27412995 + B1F SINE Alu 21 142 -7 9 1305 298 246 29 0 chr11 94430867 94430936 -27412920 + ID4 SINE ID 3 73 -10 9 1305 434 17 0 33 chr11 94430936 94430996 -27412860 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 9 1305 192 200 0 0 chr11 94433077 94433117 -27410739 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1305 213 39 0 0 chr11 94433147 94433173 -27410683 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1305 375 23 0 0 chr11 94433271 94433315 -27410541 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1305 225 0 0 0 chr11 94433315 94433339 -27410517 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1305 270 81 0 0 chr11 94434200 94434237 -27409619 + (G)n Simple_repeat Simple_repeat 1 37 0 9 1305 264 91 0 0 chr11 94434671 94434715 -27409141 + (GA)n Simple_repeat Simple_repeat 1 44 0 9 1305 309 186 0 54 chr11 94434719 94434793 -27409063 - ID_B1 SINE B4 -12 212 143 9 1305 239 324 28 9 chr11 94434793 94434825 -27409031 - PB1D9 SINE Alu -12 108 1 9 1305 268 220 198 25 chr11 94435518 94435639 -27408217 + B1F1 SINE Alu 5 146 -3 9 1305 408 259 121 45 chr11 94435933 94436028 -27407828 + B3 SINE B2 2 111 -105 9 1305 216 0 0 0 chr11 94436028 94436052 -27407804 + (G)n Simple_repeat Simple_repeat 1 24 0 9 1305 408 259 121 45 chr11 94436052 94436154 -27407702 + B3 SINE B2 112 213 -3 9 1305 23 54 0 0 chr11 94436154 94436191 -27407665 + AT_rich Low_complexity Low_complexity 1 37 0 9 1305 219 262 0 0 chr11 94436813 94436855 -27407001 + ID4_ SINE ID 34 75 -8 9 1305 230 274 0 0 chr11 94436855 94436906 -27406950 + G-rich Low_complexity Low_complexity 1 51 0 9 1305 586 277 54 68 chr11 94436983 94437204 -27406652 + B4 SINE B4 1 218 -74 9 1305 662 170 14 56 chr11 94437069 94437212 -27406644 + B1_Mur3 SINE Alu 13 149 0 9 1305 296 312 40 30 chr11 94437308 94437407 -27406449 + B4 SINE B4 191 290 -2 9 1305 463 250 28 91 chr11 94437548 94437724 -27406132 + L1M4 LINE L1 5494 5658 -522 9 1305 385 264 192 26 chr11 94437777 94438057 -27405799 + B4A SINE B4 1 265 -27 9 1305 468 0 0 0 chr11 94438057 94438109 -27405747 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1305 352 194 246 16 chr11 94438109 94438146 -27405710 + RSINE1 SINE B4 125 165 0 9 1305 347 141 0 13 chr11 94438150 94438229 -27405627 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1305 1112 62 14 0 chr11 94438241 94438386 -27405470 + B1_Mus2 SINE Alu 1 147 0 9 1305 423 0 0 0 chr11 94438631 94438678 -27405178 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1305 554 287 18 6 chr11 94438881 94438962 -27404894 + ID SINE ID 1 83 -141 9 1305 238 317 50 0 chr11 94438962 94439063 -27404793 + PB1D10 SINE Alu 1 106 -11 9 1305 1202 92 138 19 chr11 94439141 94439344 -27404512 + RMER6B LTR ERVK 1 228 -233 9 1305 921 65 0 0 chr11 94439344 94439467 -27404389 + B1_Mus1 SINE Alu 1 123 -25 9 1305 523 201 36 22 chr11 94439467 94439481 -27404375 + ID_B1 SINE B4 82 220 -4 9 1305 441 218 9 48 chr11 94439664 94439791 -27404065 + PB1D7 SINE Alu 27 150 0 9 1305 409 190 198 0 chr11 94439811 94439932 -27403924 + B1_Mur4 SINE Alu 6 150 0 9 1305 1315 86 5 5 chr11 94439955 94440143 -27403713 + B2_Mm1t SINE B2 3 190 -3 9 1305 781 218 94 25 chr11 94440186 94440388 -27403468 + B3 SINE B2 1 216 0 9 1305 1187 34 7 0 chr11 94440920 94441067 -27402789 + B1_Mus1 SINE Alu 1 148 0 9 1305 370 136 0 0 chr11 94441372 94441431 -27402425 + B1_Mur3 SINE Alu 78 136 -13 9 1305 189 0 0 0 chr11 94441490 94441511 -27402345 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1305 298 257 179 34 chr11 94441822 94441939 -27401917 + ID_B1 SINE B4 82 215 -9 9 1305 274 222 27 14 chr11 94441982 94442055 -27401801 + B1F SINE Alu 76 149 0 9 1305 377 290 145 0 chr11 94442064 94442125 -27401731 + ID SINE ID 14 77 -147 9 1305 540 42 0 0 chr11 94442125 94442196 -27401660 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 9 1305 377 290 145 0 chr11 94442196 94442279 -27401577 + ID_B1 SINE B4 78 178 -46 9 1305 348 193 143 12 chr11 94442215 94442299 -27401557 + PB1D10 SINE Alu 23 117 0 9 1305 369 0 0 0 chr11 94442776 94442817 -27401039 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1305 243 160 80 0 chr11 94443256 94443306 -27400550 + PB1D10 SINE Alu 36 89 -28 9 1305 1428 48 21 0 chr11 94443403 94443590 -27400266 + B2_Mm1t SINE B2 2 192 -1 9 1305 237 286 132 23 chr11 94443707 94443836 -27400020 + RSINE1 SINE B4 2 144 -21 9 1305 22 0 0 0 chr11 94443916 94443938 -27399918 + AT_rich Low_complexity Low_complexity 1 22 0 9 1305 1010 93 0 41 chr11 94443961 94444107 -27399749 + B1_Mus1 SINE Alu 8 147 -1 9 1305 776 159 24 8 chr11 94444310 94444437 -27399419 + B1_Mur4 SINE Alu 1 129 -21 1 1305 1134 93 0 0 chr11 94444446 94444607 -27399249 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 1 1305 649 93 0 0 chr11 94444633 94444719 -27399137 + B2_Mm2 SINE B2 2 87 -108 1 1305 655 239 75 16 chr11 94445016 94445203 -27398653 + B3A SINE B2 1 198 0 1 1305 579 15 0 0 chr11 94445236 94445304 -27398552 + B1_Mm SINE Alu 71 138 -9 1 1305 261 0 0 0 chr11 94445304 94445333 -27398523 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1305 1083 111 190 16 chr11 94445368 94445552 -27398304 + B3 SINE B2 1 216 0 1 1305 742 225 85 12 chr11 94445562 94445704 -27398152 + B3 SINE B2 25 167 -31 1 1305 537 92 0 0 chr11 94445704 94445780 -27398076 + (CATA)n Simple_repeat Simple_repeat 4 79 0 1 1305 742 221 65 62 chr11 94445780 94445835 -27398021 + B3 SINE B2 147 214 -2 1 1305 2908 174 134 66 chr11 94445993 94446719 -27397137 - RMER13A LTR ERVK -85 775 1 1 1305 1000 251 13 48 chr11 94446743 94446973 -27396883 + ID_B1 SINE B4 1 222 -2 1 1305 537 145 0 0 chr11 94446986 94447069 -27396787 + B1_Mus1 SINE Alu 20 102 -46 1 1305 853 234 19 14 chr11 94447069 94447277 -27396579 + B3 SINE B2 2 210 -6 1 1305 248 303 0 112 chr11 94447319 94447435 -27396421 + BC1_Mm scRNA scRNA 1 103 -49 1 1305 22 0 0 0 chr11 94447448 94447470 -27396386 + AT_rich Low_complexity Low_complexity 1 22 0 1 1305 1589 32 5 0 chr11 94447475 94447661 -27396195 - B2_Mm1a SINE B2 -6 187 1 1 1305 29 28 0 0 chr11 94447661 94447697 -27396159 + AT_rich Low_complexity Low_complexity 1 36 0 1 1305 804 190 201 0 chr11 94447697 94447871 -27395985 + B3 SINE B2 1 209 -7 1 1305 5170 55 24 0 chr11 94447871 94448819 -27395037 + L1_Mus1 LINE L1 5294 6256 -311 1 1305 354 306 9 0 chr11 94448819 94448927 -27394929 + ID_B1 SINE B4 116 224 0 1 1305 784 203 0 7 chr11 94449050 94449206 -27394650 + B2_Mm2 SINE B2 5 160 -33 1 1305 358 17 0 92 chr11 94449206 94449271 -27394585 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 1 1305 712 238 12 6 chr11 94449271 94449287 -27394569 + B2_Mm1a SINE B2 161 177 -16 1 1305 1100 80 0 0 chr11 94449289 94449426 -27394430 + B1_Mus2 SINE Alu 1 137 -10 1 1305 306 0 0 0 chr11 94449426 94449460 -27394396 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1305 381 294 75 8 chr11 94449492 94449574 -27394282 + B3 SINE B2 74 164 -52 1 1305 387 60 0 0 chr11 94449574 94449624 -27394232 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1305 381 294 75 8 chr11 94449624 94449661 -27394195 + B3 SINE B2 165 200 -16 1 1305 607 273 42 7 chr11 94449729 94449873 -27393983 + RSINE1 SINE B4 1 149 -16 1 1305 1255 68 90 6 chr11 94450357 94450516 -27393340 + B2_Mm1a SINE B2 2 160 -33 1 1305 252 0 0 0 chr11 94450516 94450544 -27393312 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1305 1255 68 90 6 chr11 94450544 94450561 -27393295 + B2_Mm1a SINE B2 161 191 -2 1 1305 330 183 128 38 chr11 94450608 94450652 -27393204 - B3 SINE B2 -7 186 1 1 1305 269 279 102 39 chr11 94450652 94450779 -27393077 - RSINE1 SINE B4 -29 136 2 1 1305 285 258 146 0 chr11 94451241 94451330 -27392526 + RSINE1 SINE B4 43 144 -21 1 1305 22 80 0 0 chr11 94451344 94451394 -27392462 + AT_rich Low_complexity Low_complexity 1 50 0 1 1305 877 145 21 14 chr11 94451398 94451538 -27392318 - B1_Mur2 SINE Alu 0 149 9 1 1305 516 73 0 42 chr11 94451560 94451631 -27392225 - B1_Mus2 SINE Alu -14 133 66 1 1305 487 157 26 128 chr11 94451653 94451770 -27392086 + MT2B LTR ERVL 153 257 -344 1 1305 1042 62 0 0 chr11 94451672 94451802 -27392054 + B1_Mus1 SINE Alu 6 135 -13 1 1305 306 0 0 0 chr11 94451802 94451836 -27392020 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 1305 302 176 0 38 chr11 94451916 94451969 -27391887 - B1_Mus1 SINE Alu -90 58 8 1 1305 211 290 0 101 chr11 94451969 94451985 -27391871 - B4 SINE B4 -150 142 81 1 1305 1500 197 128 36 chr11 94452026 94452503 -27391353 + RLTR20B3 LTR ERVK 40 560 0 1 1305 562 271 67 8 chr11 94452505 94452639 -27391217 + B3A SINE B2 2 143 -55 1 1305 381 292 61 8 chr11 94452763 94452779 -27391077 + B1F SINE Alu 12 149 0 1 1305 514 244 17 0 chr11 94452779 94452894 -27390962 + ID_B1 SINE B4 108 224 0 1 1305 790 307 95 38 chr11 94452916 94453360 -27390496 + Lx8 LINE L1 6807 7275 -198 1 1305 1089 101 6 11 chr11 94453684 94453865 -27389991 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1305 691 209 58 0 chr11 94454070 94454209 -27389647 + B1F SINE Alu 1 147 -2 1 1305 228 233 0 0 chr11 94454230 94454273 -27389583 + RLTR13D3 LTR ERVK 1 43 -1071 1 1305 1193 75 0 0 chr11 94454518 94454665 -27389191 - B1_Mus2 SINE Alu 0 147 1 1 1305 369 0 0 0 chr11 94454963 94455004 -27388852 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1305 1252 35 0 0 chr11 94455023 94455168 -27388688 - B1_Mus2 SINE Alu -1 146 2 1 1305 391 198 61 66 chr11 94455331 94455492 -27388364 + RLTR13D3 LTR ERVK 789 1053 -61 1 1305 230 330 136 0 chr11 94455746 94455849 -27388007 - B1F2 SINE Alu -32 117 1 1 1305 1202 54 14 0 chr11 94455866 94456013 -27387843 - B1_Mur4 SINE Alu 0 150 2 1 1305 258 214 13 79 chr11 94456099 94456175 -27387681 - ID4_ SINE ID -10 73 3 1 1305 1030 86 7 28 chr11 94456359 94456502 -27387354 + B1_Mus1 SINE Alu 4 143 -5 1 1305 197 33 0 32 chr11 94456503 94456534 -27387322 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 1 1305 207 0 0 0 chr11 94456565 94456588 -27387268 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 1 1305 884 72 112 0 chr11 94456589 94456714 -27387142 - B1_Mus1 SINE Alu -4 144 6 1 1305 340 235 59 0 chr11 94456828 94456913 -27386943 + B1F SINE Alu 47 136 -13 1 1305 473 257 25 42 chr11 94456958 94457076 -27386780 + PB1D7 SINE Alu 4 119 -1 1 1305 476 206 0 32 chr11 94457120 94457215 -27386641 + RSINE1 SINE B4 2 93 -72 1 1305 479 182 0 23 chr11 94457360 94457534 -27386322 + (CA)n Simple_repeat Simple_repeat 1 170 0 1 1305 420 20 0 0 chr11 94457538 94457587 -27386269 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1305 261 57 0 0 chr11 94457587 94457621 -27386235 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1305 366 295 0 79 chr11 94457641 94457755 -27386101 + MTEa LTR MaLR 140 244 -135 1 1305 427 193 140 0 chr11 94457791 94457905 -27385951 + MTEa LTR MaLR 242 371 -8 1 1305 368 245 25 83 chr11 94457941 94458061 -27385795 + PB1D7 SINE Alu 1 113 -7 1 1305 1001 224 5 19 chr11 94458073 94458282 -27385574 + B3 SINE B2 1 206 -10 1 1305 884 28 9 0 chr11 94458307 94458416 -27385440 - B1_Mus2 SINE Alu 0 147 38 1 1305 183 275 57 38 chr11 94458586 94458639 -27385217 + MER5A DNA MER1_type 1 54 -135 1 1305 270 251 55 50 chr11 94458709 94458853 -27385003 + MLT1A1 LTR MaLR 163 344 -64 1 1305 262 185 35 0 chr11 94458918 94458981 -27384875 + L1ME3 LINE L1 6093 6158 -6 1 1305 222 174 0 0 chr11 94459281 94459327 -27384529 + GA-rich Low_complexity Low_complexity 2 47 0 1 1305 381 70 0 0 chr11 94459383 94459440 -27384416 + (TGG)n Simple_repeat Simple_repeat 1 57 0 1 1305 737 209 0 57 chr11 94459441 94459598 -27384258 - B1_Mus1 SINE Alu 0 148 1 1 1305 313 295 190 21 chr11 94459986 94460010 -27383846 + ID_B1 SINE B4 59 224 0 1 1305 439 298 0 34 chr11 94460010 94460128 -27383728 + PB1D7 SINE Alu 7 120 0 1 1305 348 260 0 0 chr11 94460652 94460725 -27383131 + B4A SINE B4 1 73 -219 1 1305 306 164 0 0 chr11 94460725 94460780 -27383076 + T-rich Low_complexity Low_complexity 1 55 0 1 1305 1258 54 0 0 chr11 94460780 94460927 -27382929 - B1_Mus2 SINE Alu 0 147 1 1 1305 676 296 53 48 chr11 94460927 94461154 -27382702 + B4A SINE B4 63 290 -2 1 1305 1191 103 42 26 chr11 94461159 94461329 -27382527 + B2_Mm2 SINE B2 2 176 -19 1 1305 1259 35 0 0 chr11 94461329 94461472 -27382384 + B1_Mus2 SINE Alu 1 143 -4 1 1305 1191 103 42 26 chr11 94461472 94461491 -27382365 + B2_Mm2 SINE B2 177 194 -1 1 1305 464 86 0 14 chr11 94461493 94461564 -27382292 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 1 1305 483 63 0 0 chr11 94461694 94461757 -27382099 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1305 533 164 37 10 chr11 94461862 94461967 -27381889 - B1_Mm SINE Alu -3 147 43 1 1305 243 276 121 44 chr11 94461910 94462001 -27381855 - MT2B LTR ERVL -344 257 160 1 1305 211 206 28 42 chr11 94462359 94462373 -27381483 + polypurine Low_complexity Low_complexity 2 15 0 1 1305 875 176 7 0 chr11 94462373 94462515 -27381341 + B1_Mur4 SINE Alu 1 143 -7 1 1305 211 206 28 42 chr11 94462515 94462571 -27381285 + GA-rich Low_complexity Low_complexity 16 70 0 1 1305 216 111 0 0 chr11 94463211 94463247 -27380609 + (CGGGG)n Simple_repeat Simple_repeat 1 36 0 1 1305 234 91 0 0 chr11 94464235 94464268 -27379588 + (TCTCCC)n Simple_repeat Simple_repeat 4 36 0 1 1305 243 0 0 0 chr11 94464788 94464815 -27379041 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1305 244 64 106 0 chr11 94464846 94464893 -27378963 - FAM SINE Alu -1 314 263 1 1305 636 212 51 0 chr11 94464853 94464990 -27378866 - ID_B1 SINE B4 0 224 81 1 1305 697 253 12 19 chr11 94464990 94465151 -27378705 - RSINE1 SINE B4 -4 161 2 1 1305 677 191 0 0 chr11 94465162 94465277 -27378579 - ID_B1 SINE B4 -5 219 105 1 1305 553 261 60 0 chr11 94465277 94465294 -27378562 - B1F SINE Alu -3 144 5 1 1305 363 242 104 28 chr11 94465434 94465549 -27378307 + PB1 SINE Alu 4 125 -2 1 1305 275 178 208 52 chr11 94465543 94465620 -27378236 + MT2B LTR ERVL 152 240 -361 1 1305 329 159 29 14 chr11 94465586 94465656 -27378200 + PB1D9 SINE Alu 50 120 0 1 1305 880 44 341 0 chr11 94465658 94465793 -27378063 + B2_Mm2 SINE B2 1 181 -14 1 1305 281 254 0 0 chr11 94465809 94465864 -27377992 + ID SINE ID 26 80 -144 1 1305 645 130 0 0 chr11 94466053 94466145 -27377711 + B1_Mur1 SINE Alu 46 137 -12 1 1305 420 71 0 0 chr11 94466154 94466210 -27377646 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 1 1305 1013 153 0 0 chr11 94466303 94466453 -27377403 - B1_Mur4 SINE Alu 0 150 1 1 1305 262 312 32 0 chr11 94466800 94466893 -27376963 + RMER15 LTR ERVL 395 490 -85 1 1305 27 0 0 0 chr11 94466977 94467004 -27376852 + AT_rich Low_complexity Low_complexity 1 27 0 1 1305 1238 48 0 0 chr11 94467009 94467155 -27376701 + B1_Mm SINE Alu 2 147 0 1 1305 628 164 103 32 chr11 94467230 94467356 -27376500 + B1_Mur3 SINE Alu 2 136 -13 1 1305 408 214 0 0 chr11 94467372 94467442 -27376414 + B1_Mur2 SINE Alu 40 109 -40 1 1305 246 180 23 4 chr11 94467431 94467484 -27376372 - B1_Mur4 SINE Alu -8 142 89 1 1305 882 105 90 0 chr11 94467607 94467740 -27376116 + B1_Mus1 SINE Alu 3 147 -1 1 1305 1279 98 5 44 chr11 94468272 94468475 -27375381 + B2_Mm2 SINE B2 1 195 0 1 1305 895 161 29 0 chr11 94468521 94468658 -27375198 + B1_Mur2 SINE Alu 2 142 -7 1 1305 225 83 0 0 chr11 94468660 94468696 -27375160 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 1305 485 58 0 14 chr11 94468695 94468765 -27375091 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 1 1305 1268 102 23 0 chr11 94468937 94469114 -27374742 + B2_Mm2 SINE B2 1 181 -14 1 1305 1196 62 0 0 chr11 94469124 94469270 -27374586 - B1_Mus2 SINE Alu 0 147 2 1 1305 27 29 0 0 chr11 94469270 94469304 -27374552 + AT_rich Low_complexity Low_complexity 1 34 0 1 1305 258 255 34 34 chr11 94469611 94469632 -27374224 + RMER17B LTR ERVK 76 94 -316 1 1305 1143 145 384 4 chr11 94469632 94469895 -27373961 + ORR1B2 LTR MaLR 1 363 -4 1 1305 838 73 35 7 chr11 94469895 94470037 -27373819 + RMER17B LTR ERVK 313 457 -501 1 1305 297 100 0 0 chr11 94470354 94470404 -27373452 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1 1305 1047 103 21 0 chr11 94470404 94470549 -27373307 - B1_Mus1 SINE Alu 0 148 1 1 1305 3996 127 72 38 chr11 94470556 94471287 -27372569 - RMER6A LTR ERVK 0 756 1 1 1305 1244 48 0 0 chr11 94471352 94471499 -27372357 + B1_Mus2 SINE Alu 1 147 0 1 1305 443 186 35 11 chr11 94471554 94471641 -27372215 - RMER5 LTR ERV1 -10 524 436 1 1305 284 292 62 10 chr11 94471686 94471783 -27372073 + B1_Mur2 SINE Alu 42 143 -6 1 1305 435 291 100 74 chr11 94471889 94472119 -27371737 - RMER5 LTR ERV1 -159 375 140 1 1305 275 108 0 0 chr11 94472165 94472202 -27371654 - B2_Mm2 SINE B2 -157 38 2 1 1305 360 0 0 0 chr11 94472235 94472275 -27371581 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1305 303 200 30 30 chr11 94472275 94472342 -27371514 - ID2 SINE ID -13 70 4 1 1305 296 281 34 0 chr11 94472472 94472561 -27371295 + PB1D10 SINE Alu 24 115 -2 1 1305 21 0 0 0 chr11 94472847 94472868 -27370988 + AT_rich Low_complexity Low_complexity 1 21 0 1 1305 22 0 0 0 chr11 94473002 94473024 -27370832 + AT_rich Low_complexity Low_complexity 1 22 0 1 1305 1226 48 7 0 chr11 94473084 94473230 -27370626 + B1_Mus1 SINE Alu 2 148 0 1 1305 707 116 8 0 chr11 94473230 94473351 -27370505 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 1 1305 293 221 12 83 chr11 94473351 94473435 -27370421 - MLT1D LTR MaLR -329 176 99 1 1305 346 290 90 0 chr11 94473479 94473579 -27370277 - PB1D10 SINE Alu -8 109 1 1 1305 308 218 74 57 chr11 94473593 94473740 -27370116 - B3A SINE B2 0 198 2 1 1305 229 228 0 0 chr11 94473743 94473800 -27370056 - RCHARR1 DNA MER1_type -441 533 477 1 1305 850 152 7 46 chr11 94473814 94473966 -27369890 + B1_Mur4 SINE Alu 5 150 0 1 1305 6800 134 72 71 chr11 94473973 94474213 -27369643 + Lx5 LINE L1 5680 5894 -1156 1 1305 1154 52 0 0 chr11 94474213 94474348 -27369508 + B1_Mus2 SINE Alu 1 135 -12 1 1305 6800 134 72 71 chr11 94474348 94475476 -27368380 + Lx5 LINE L1 5895 7049 -1 1 1305 21 57 0 0 chr11 94475476 94475511 -27368345 + AT_rich Low_complexity Low_complexity 1 35 0 1 1305 213 39 0 0 chr11 94475569 94475595 -27368261 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1305 1095 65 65 0 chr11 94475595 94475733 -27368123 - B1_Mus2 SINE Alu 0 147 1 1 1305 252 250 86 34 chr11 94475739 94475870 -27367986 - MIR SINE MIR -112 164 23 1 1305 1135 204 71 81 chr11 94475880 94476163 -27367693 - RMER15 LTR ERVL -3 572 293 1 1305 802 209 41 86 chr11 94476325 94476507 -27367349 - RMER15 LTR ERVL -287 288 111 1 1305 1362 71 38 5 chr11 94476507 94476691 -27367165 - B2_Mm2 SINE B2 -5 190 1 1 1305 802 209 41 86 chr11 94476691 94476775 -27367081 - RMER15 LTR ERVL -465 110 34 1 1305 2735 82 3 19 chr11 94477324 94477695 -27366161 + RLTR8 LTR ERVK 1 365 0 1 1305 315 0 0 0 chr11 94477808 94477843 -27366013 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1305 329 0 24 0 chr11 94477843 94477883 -27365973 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1305 2163 151 263 4 chr11 94477883 94478139 -27365717 + RMER6C LTR ERVK 9 347 -343 1 1305 669 25 0 0 chr11 94478139 94478218 -27365638 + (GGGAGA)n Simple_repeat Simple_repeat 4 82 0 1 1305 2163 169 199 43 chr11 94478218 94478674 -27365182 + RMER6C LTR ERVK 321 717 -39 1 1305 610 214 23 76 chr11 94478684 94478711 -27365145 - RSINE1 SINE B4 -2 163 142 1 1305 354 80 0 0 chr11 94478711 94478761 -27365095 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1305 610 214 23 76 chr11 94478761 94478905 -27364951 - RSINE1 SINE B4 -24 141 1 1 1305 394 237 0 0 chr11 94478967 94479043 -27364813 - ID_B1 SINE B4 -34 190 115 1 1305 1978 147 58 58 chr11 94479095 94479280 -27364576 + ORR1C2 LTR MaLR 3 179 -205 1 1305 252 0 0 0 chr11 94479280 94479308 -27364548 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1305 1978 147 58 58 chr11 94479308 94479504 -27364352 + ORR1C2 LTR MaLR 180 384 0 1 1305 1757 136 235 22 chr11 94479834 94480157 -27363699 - ORR1B1 LTR MaLR -2 392 1 1 1305 1189 22 0 0 chr11 94480518 94480652 -27363204 + B1_Mus2 SINE Alu 1 134 -13 1 1305 737 155 147 0 chr11 94481042 94481171 -27362685 + B1_Mus1 SINE Alu 1 148 0 1 1305 690 100 0 0 chr11 94481361 94481461 -27362395 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 1305 1157 128 6 6 chr11 94481468 94481641 -27362215 - B2_Mm2 SINE B2 -18 177 5 1 1305 2849 142 77 30 chr11 94481668 94482047 -27361809 - RMER16 LTR ERVK 0 533 132 1 1305 1245 118 43 0 chr11 94482047 94482233 -27361623 - B2_Mm2 SINE B2 0 195 2 1 1305 2849 142 77 30 chr11 94482233 94482362 -27361494 - RMER16 LTR ERVK -402 131 2 1 1305 1295 107 32 0 chr11 94482911 94483098 -27360758 - B2_Mm2 SINE B2 -1 194 2 1 1305 1342 76 43 0 chr11 94483398 94483583 -27360273 + B2_Mm2 SINE B2 2 194 -1 1 1305 759 266 57 53 chr11 94483642 94483924 -27359932 + B4A SINE B4 10 292 0 1 1305 627 238 20 20 chr11 94484070 94484216 -27359640 - RSINE1 SINE B4 -17 148 3 1 1305 4498 12 2 0 chr11 94484234 94484726 -27359130 - MT2_Mm LTR ERVL 0 493 1 1 1305 305 0 0 0 chr11 94484726 94484764 -27359092 - MERVL-int LTR ERVL 0 5485 5448 1 1305 399 167 46 35 chr11 94484764 94484851 -27359005 - ORR1A3-int LTR MaLR -1323 640 553 1 1305 39569 14 14 0 chr11 94484851 94490138 -27353718 - MERVL-int LTR ERVL -125 5360 1 1 1305 4498 12 2 0 chr11 94490138 94490630 -27353226 - MT2_Mm LTR ERVL 0 493 1 1 1305 494 190 140 0 chr11 94490630 94490730 -27353126 - B1_Mur1 SINE Alu -14 135 22 1 1305 215 276 0 31 chr11 94491103 94491200 -27352656 + G-rich Low_complexity Low_complexity 6 99 0 1 1305 302 319 29 27 chr11 94492206 94492377 -27351479 + MIR SINE MIR 29 205 -63 1 1305 1145 62 7 0 chr11 94492377 94492523 -27351333 + B1_Mus2 SINE Alu 1 147 0 1 1305 183 80 0 0 chr11 94493699 94493724 -27350132 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1305 412 233 105 19 chr11 94493830 94493935 -27349921 - PB1D10 SINE Alu -2 115 2 1 1305 325 243 22 31 chr11 94493947 94494059 -27349797 - B1F SINE Alu 0 117 8 1 1305 241 259 17 0 chr11 94494007 94494065 -27349791 - ID_B1 SINE B4 -84 140 82 1 1305 216 222 18 18 chr11 94494346 94494401 -27349455 - PB1 SINE Alu -1 126 72 1 1305 236 318 22 11 chr11 94495193 94495282 -27348574 - B4 SINE B4 -189 103 14 1 1305 291 294 0 0 chr11 94495218 94495286 -27348570 - ID4_ SINE ID -6 77 10 1 1305 289 215 224 11 chr11 94495289 94495383 -27348473 - PB1D7 SINE Alu -34 113 3 1 1305 189 0 0 0 chr11 94495518 94495539 -27348317 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1305 508 126 26 61 chr11 94495547 94495646 -27348210 - B1_Mur4 SINE Alu -32 118 19 1 1305 1021 199 38 43 chr11 94496483 94496693 -27347163 - B3 SINE B2 0 216 8 1 1305 864 245 108 11 chr11 94496714 94496974 -27346882 - B4 SINE B4 -6 286 2 1 1305 321 208 436 0 chr11 94497059 94497153 -27346703 + RSINE1 SINE B4 4 138 -27 1 1305 272 253 21 84 chr11 94497222 94497317 -27346539 + B3A SINE B2 3 91 -107 1 1305 500 236 132 16 chr11 94498034 94498163 -27345693 + ID_B1 SINE B4 23 166 -58 1 1305 250 197 76 101 chr11 94498107 94498186 -27345670 + B1F1 SINE Alu 27 103 -46 1 1305 380 214 76 19 chr11 94500156 94500261 -27343595 + PB1D10 SINE Alu 1 111 -6 1 1305 232 135 0 0 chr11 94500717 94500754 -27343102 + B1_Mur4 SINE Alu 113 149 -1 2 1305 201 170 0 60 chr11 94500754 94500804 -27343052 + (CCCCAA)n Simple_repeat Simple_repeat 3 49 0 3 1305 1140 62 0 0 chr11 94500933 94501079 -27342777 + B1_Mus2 SINE Alu 2 147 0 4 1305 265 338 19 38 chr11 94501404 94501564 -27342292 - MamRep1161 DNA TcMar -794 163 7 5 1305 447 270 63 0 chr11 94501892 94502018 -27341838 - RSINE1 SINE B4 -29 136 3 6 1305 1002 71 50 0 chr11 94502047 94502187 -27341669 - B1_Mm SINE Alu 0 147 1 7 1305 263 245 234 0 chr11 94502195 94502289 -27341567 - ID_B1 SINE B4 -4 220 105 8 163 444 253 25 24 chr11 94502856 94502998 -27340858 + B1_Mur2 SINE Alu 13 149 0 9 1306 207 139 0 0 chr11 94503193 94503229 -27340627 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 1 1306 912 122 0 57 chr11 94503525 94503682 -27340174 - B1_Mus1 SINE Alu 0 148 1 1 1306 917 101 142 6 chr11 94503692 94503861 -27339995 - B2_Mm1t SINE B2 0 193 2 1 1306 3919 76 11 2 chr11 94503882 94504422 -27339434 - L1_Mus1 LINE L1 0 6567 6023 1 1306 806 166 117 15 chr11 94507506 94507702 -27336154 + B3 SINE B2 1 216 0 1 1306 242 143 20 0 chr11 94507937 94507986 -27335870 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1306 833 230 57 29 chr11 94508226 94508436 -27335420 - B3 SINE B2 0 216 1 1 1306 278 312 40 68 chr11 94509718 94509866 -27333990 + RSINE1 SINE B4 1 144 -21 1 1306 625 203 30 8 chr11 94509885 94510019 -27333837 + B1_Mur3 SINE Alu 1 137 -12 1 1306 198 118 0 0 chr11 94510023 94510057 -27333799 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 1 1306 371 134 60 0 chr11 94510089 94510156 -27333700 + PB1D9 SINE Alu 35 105 -15 2 1306 990 167 0 0 chr11 94510158 94510338 -27333518 + GA-rich Low_complexity Low_complexity 1 180 0 2 1306 686 181 19 65 chr11 94510397 94510551 -27333305 - B1_Mur1 SINE Alu -2 147 1 2 1306 310 383 34 46 chr11 94511009 94511247 -27332609 + LTR33 LTR ERVL 144 378 -137 2 1306 412 309 26 20 chr11 94512634 94512786 -27331070 - ID_B1 SINE B4 0 224 72 2 1306 1566 31 0 10 chr11 94512818 94513013 -27330843 - B2_Mm1a SINE B2 0 193 1 2 1306 1159 48 0 20 chr11 94513016 94513166 -27330690 - B1_Mus2 SINE Alu 0 147 1 2 1306 27 0 0 0 chr11 94513176 94513203 -27330653 + AT_rich Low_complexity Low_complexity 1 27 0 2 1306 681 253 0 18 chr11 94513206 94513371 -27330485 - RSINE1 SINE B4 -2 163 2 2 1306 236 270 165 29 chr11 94513371 94513474 -27330382 + MT2B LTR ERVL 121 237 -364 2 1306 447 60 47 0 chr11 94513419 94513498 -27330358 + B1_Mus1 SINE Alu 26 112 -8 3 1306 400 231 0 21 chr11 94513456 94513549 -27330307 + B3A SINE B2 55 145 -53 3 1306 344 267 37 19 chr11 94513976 94514083 -27329773 + PB1D10 SINE Alu 1 109 -8 3 1306 33 20 0 20 chr11 94514103 94514114 -27329742 + AT_rich Low_complexity Low_complexity 1 11 0 3 1306 1052 88 0 26 chr11 94514114 94514265 -27329591 - B1_Mus1 SINE Alu 0 148 2 3 1306 33 20 0 20 chr11 94514265 94514304 -27329552 + AT_rich Low_complexity Low_complexity 1 39 0 3 1306 1142 254 41 26 chr11 94514369 94514709 -27329147 - L1MB8 LINE L1 -219 5959 5615 3 1306 194 225 66 66 chr11 94514778 94514854 -27329002 + MIRb SINE MIR 156 231 -37 3 1306 256 178 59 118 chr11 94515835 94515851 -27328005 + MT2B2 LTR ERVL 152 246 -337 3 1306 354 226 59 12 chr11 94515851 94515936 -27327920 + B1F SINE Alu 3 91 -58 3 1306 291 28 0 0 chr11 94515954 94515990 -27327866 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 4 1306 278 295 0 13 chr11 94516259 94516338 -27327518 + ID_B1 SINE B4 92 169 -55 4 1306 722 184 0 33 chr11 94516409 94516561 -27327295 - B1_Mur2 SINE Alu -1 148 2 4 1306 957 257 5 14 chr11 94516735 94516948 -27326908 - B3 SINE B2 -5 211 1 4 1306 281 228 0 60 chr11 94516991 94517075 -27326781 - Lx8 LINE L1 -2 7471 7393 4 1306 188 333 66 11 chr11 94518413 94518504 -27325352 - MIRb SINE MIR -57 211 116 4 1306 23 33 0 0 chr11 94518711 94518741 -27325115 + AT_rich Low_complexity Low_complexity 1 30 0 4 1306 1076 58 0 0 chr11 94518838 94518975 -27324881 + B1_Mm SINE Alu 2 138 -9 4 1306 227 31 31 0 chr11 94518975 94519007 -27324849 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1306 775 117 78 0 chr11 94519018 94519146 -27324710 + B1_Mur3 SINE Alu 10 147 -2 4 1306 705 88 0 0 chr11 94519146 94519248 -27324608 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 5 1306 825 204 133 0 chr11 94519261 94519442 -27324414 + B3 SINE B2 9 213 -3 5 1306 605 191 17 0 chr11 94519463 94519578 -27324278 + B1_Mur1 SINE Alu 13 129 -20 5 1306 313 234 70 127 chr11 94519578 94519596 -27324260 + MT2B LTR ERVL 208 302 -299 5 1306 369 280 0 0 chr11 94519789 94519889 -27323967 - PB1D10 SINE Alu -17 100 1 5 1306 522 255 49 14 chr11 94519964 94520107 -27323749 - B1F1 SINE Alu -1 148 1 5 1306 578 276 15 0 chr11 94520159 94520293 -27323563 - B3A SINE B2 -62 136 1 5 1306 1120 101 90 0 chr11 94521227 94521405 -27322451 + B2_Mm2 SINE B2 1 194 -1 5 1306 1211 21 0 14 chr11 94521721 94521869 -27321987 + B1_Mus2 SINE Alu 2 147 0 5 1306 541 305 89 30 chr11 94522993 94523196 -27320660 + B4A SINE B4 70 284 -8 5 1306 1372 43 31 31 chr11 94523254 94523413 -27320443 + B2_Mm1a SINE B2 1 159 -34 6 1306 180 0 0 0 chr11 94523413 94523433 -27320423 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1306 1372 43 31 31 chr11 94523433 94523466 -27320390 + B2_Mm1a SINE B2 160 193 0 6 1306 388 230 37 142 chr11 94523630 94523649 -27320207 + B4 SINE B4 79 223 -69 6 1306 918 93 0 28 chr11 94523649 94523792 -27320064 + B1_Mus1 SINE Alu 8 146 -2 6 1306 216 0 0 0 chr11 94523806 94523830 -27320026 + (CCA)n Simple_repeat Simple_repeat 1 24 0 6 1306 385 182 89 22 chr11 94524879 94524969 -27318887 + MTD LTR MaLR 3 98 -321 6 1306 495 225 191 0 chr11 94524985 94525158 -27318698 + MTD LTR MaLR 214 419 0 6 1306 538 250 0 24 chr11 94526401 94526528 -27317328 + B1F SINE Alu 6 129 -20 6 1306 341 319 0 62 chr11 94526528 94526545 -27317311 + ID_B1 SINE B4 87 221 -3 6 1306 416 280 42 17 chr11 94527896 94528016 -27315840 + MIR3 SINE MIR 65 187 -21 6 1306 927 140 214 0 chr11 94530367 94530545 -27313311 - B3 SINE B2 0 216 1 6 1306 1109 61 7 0 chr11 94532606 94532753 -27311103 + B1_Mus1 SINE Alu 1 148 0 7 1306 362 37 56 0 chr11 94532753 94532807 -27311049 + (GAAAA)n Simple_repeat Simple_repeat 2 58 0 7 1306 294 311 120 22 chr11 94533804 94534080 -27309776 + L2 LINE L2 2279 2581 -838 7 1306 184 254 95 0 chr11 94534235 94534298 -27309558 + L2 LINE L2 2743 2811 -608 7 1306 986 173 37 42 chr11 94534312 94534529 -27309327 - B3 SINE B2 0 216 1 7 1306 558 300 19 0 chr11 94534858 94535018 -27308838 + RSINE1 SINE B4 3 165 0 7 1306 333 47 0 0 chr11 94536091 94536134 -27307722 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1306 200 86 29 0 chr11 94537039 94537074 -27306782 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1306 212 235 0 73 chr11 94538495 94538605 -27305251 + (CCCG)n Simple_repeat Simple_repeat 3 104 0 7 1306 368 271 194 0 chr11 94539253 94539408 -27304448 - MER5A DNA MER1_type -2 187 3 7 1306 535 195 80 0 chr11 94539943 94540056 -27303800 - ID_B1 SINE B4 -1 223 102 7 1306 299 283 121 0 chr11 94539968 94540067 -27303789 - B1F SINE Alu -29 120 10 8 1306 574 234 24 0 chr11 94540148 94540272 -27303584 + B4A SINE B4 48 174 -118 8 1306 27 49 0 0 chr11 94540373 94540414 -27303442 + AT_rich Low_complexity Low_complexity 1 41 0 8 1306 253 282 0 149 chr11 94540467 94540588 -27303268 + MT2B LTR ERVL 155 257 -344 8 1306 766 150 14 35 chr11 94540487 94540632 -27303224 + B1_Mus2 SINE Alu 6 147 0 8 1306 338 318 56 22 chr11 94540773 94540953 -27302903 + MamRep434 DNA TcMar 104 289 -137 8 1306 556 229 42 0 chr11 94541116 94541234 -27302622 - ID_B1 SINE B4 -4 220 98 8 1306 233 333 84 25 chr11 94541118 94541321 -27302535 + YREP_Mm Unknown Unknown 183 397 -1415 8 1306 1286 80 5 26 chr11 94541406 94541598 -27302258 - B2_Mm2 SINE B2 -6 189 2 8 1306 886 93 7 14 chr11 94541601 94541743 -27302113 + B2_Mm2 SINE B2 52 192 -3 8 1306 323 268 0 12 chr11 94541924 94542007 -27301849 + ID4_ SINE ID 2 83 0 9 1306 1015 219 29 0 chr11 94542031 94542241 -27301615 + B3 SINE B2 1 216 0 9 1306 295 273 6 182 chr11 94542276 94542398 -27301458 - L1ME3A LINE L1 -13 6160 6064 9 1306 1062 107 85 0 chr11 94542398 94542575 -27301281 - B2_Mm1t SINE B2 0 193 2 9 1306 295 273 6 182 chr11 94542575 94542622 -27301234 - L1ME3A LINE L1 -110 6063 6021 9 1306 320 311 83 6 chr11 94542824 94543005 -27300851 - L1ME3A LINE L1 -517 5607 5413 9 1306 1066 222 9 0 chr11 94543114 94543335 -27300521 - ID_B1 SINE B4 0 224 2 9 1306 230 269 39 0 chr11 94543562 94543640 -27300216 - ID4_ SINE ID -2 81 1 9 1306 387 299 37 7 chr11 94544247 94544382 -27299474 - B1F SINE Alu -10 139 1 9 1306 253 281 0 0 chr11 94544422 94544479 -27299377 - ID4_ SINE ID -26 57 1 9 1306 518 277 12 70 chr11 94544598 94544737 -27299119 - RSINE1 SINE B4 -4 161 32 9 1306 1116 129 109 47 chr11 94544737 94544948 -27298908 - URR1A DNA MER1_type -2 224 1 9 1306 518 277 12 70 chr11 94544948 94544979 -27298877 - RSINE1 SINE B4 -134 31 1 9 1306 800 254 18 23 chr11 94544987 94545205 -27298651 - ID_B1 SINE B4 -7 217 1 1 1306 479 103 26 0 chr11 94545696 94545774 -27298082 + (TCTCCC)n Simple_repeat Simple_repeat 4 83 0 1 1306 209 261 0 0 chr11 94545777 94545842 -27298014 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 1306 218 186 0 0 chr11 94545779 94545822 -27298034 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1306 709 226 7 7 chr11 94545883 94546030 -27297826 + B1F SINE Alu 2 148 -1 1 1306 1458 246 60 0 chr11 94546391 94546741 -27297115 - MTEa LTR MaLR -1 378 8 1 1306 222 22 20 82 chr11 94546748 94546797 -27297059 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 1 1306 819 64 176 0 chr11 94546798 94546923 -27296933 - B1_Mus1 SINE Alu 0 148 2 1 1306 441 0 0 0 chr11 94547242 94547291 -27296565 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1306 1218 88 6 0 chr11 94547292 94547462 -27296394 - B2_Mm2 SINE B2 -24 171 1 1 1306 1137 190 68 16 chr11 94547481 94547631 -27296225 + ORR1D1 LTR MaLR 1 164 -210 1 1306 231 36 0 0 chr11 94547631 94547659 -27296197 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1306 1137 190 68 16 chr11 94547659 94547758 -27296098 + ORR1D1 LTR MaLR 165 263 -111 1 1306 1583 180 18 42 chr11 94547758 94548095 -27295761 - ORR1A4 LTR MaLR 0 329 1 1 1306 234 241 53 66 chr11 94548118 94548186 -27295670 - B2_Mm2 SINE B2 0 195 130 1 1306 288 0 0 0 chr11 94548186 94548218 -27295638 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1306 250 226 10 61 chr11 94548218 94548300 -27295556 - B3 SINE B2 -66 129 47 1 1306 274 274 130 19 chr11 94548365 94548385 -27295471 + ORR1D1 LTR MaLR 302 320 -101 1 1306 1093 74 92 6 chr11 94548385 94548549 -27295307 - B2_Mm1t SINE B2 -14 179 2 1 1306 384 181 15 0 chr11 94548549 94548636 -27295220 + ORR1D1 LTR MaLR 285 421 0 1 1306 258 316 13 0 chr11 94549023 94549102 -27294754 - ID4 SINE ID -3 80 1 1 1306 348 24 0 0 chr11 94549114 94549155 -27294701 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1306 195 157 0 0 chr11 94549222 94549273 -27294583 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1 1306 369 197 78 13 chr11 94549278 94549355 -27294501 + RSINE1 SINE B4 7 88 -77 1 1306 1785 170 12 19 chr11 94549525 94549848 -27294008 + L1_Mur3 LINE L1 518 838 -6890 1 1306 1689 157 109 11 chr11 94549861 94550005 -27293851 + ORR1B1 LTR MaLR 12 184 -210 1 1306 306 0 0 0 chr11 94550005 94550039 -27293817 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1306 1689 157 109 11 chr11 94550039 94550243 -27293613 + ORR1B1 LTR MaLR 185 394 0 1 1306 7120 143 58 16 chr11 94550243 94551691 -27292165 + L1_Mur3 LINE L1 881 2358 -3522 1 1306 2077 88 55 0 chr11 94551691 94551998 -27291858 + ORR1A2 LTR MaLR 1 324 -3 1 1306 7120 148 72 20 chr11 94551998 94552321 -27291535 + L1_Mur3 LINE L1 2359 2739 -3141 1 1306 553 192 88 59 chr11 94552301 94552539 -27291317 + Lx7 LINE L1 7405 7649 -47 1 1306 228 257 100 0 chr11 94552539 94552609 -27291247 - ID4_ SINE ID -3 80 4 1 1306 1176 35 14 0 chr11 94552641 94552786 -27291070 + B1_Mus1 SINE Alu 2 148 0 1 1306 460 264 228 0 chr11 94552882 94553049 -27290807 + ID_B1 SINE B4 19 223 -1 1 1306 605 211 0 34 chr11 94553065 94553212 -27290644 + B1_Mur1 SINE Alu 1 142 -7 1 1306 1000 234 113 71 chr11 94553265 94553301 -27290555 + RMER4B LTR ERVK 17 49 -536 1 1306 2787 24 3 0 chr11 94553301 94553639 -27290217 + L1Md_F2 LINE L1 6244 6582 0 1 1306 1000 234 113 71 chr11 94553639 94553947 -27289909 + RMER4B LTR ERVK 50 383 -202 1 1306 2531 72 71 13 chr11 94553947 94554218 -27289638 - MTB LTR MaLR 0 400 124 1 1306 189 0 0 0 chr11 94554218 94554239 -27289617 + (CCCCCA)n Simple_repeat Simple_repeat 6 26 0 1 1306 2531 72 71 13 chr11 94554239 94554345 -27289511 - MTB LTR MaLR -277 123 1 1 1306 1000 234 95 165 chr11 94554345 94554471 -27289385 + RMER4B LTR ERVK 349 455 -11 1 1306 222 62 0 0 chr11 94554488 94554520 -27289336 + (TTAG)n Simple_repeat Simple_repeat 3 34 0 1 1306 724 210 0 0 chr11 94554526 94554669 -27289187 - B1_Mus1 SINE Alu 0 148 6 1 1306 366 240 89 162 chr11 94554784 94554877 -27288979 + B4 SINE B4 16 92 -200 1 1306 722 235 59 20 chr11 94554877 94555081 -27288775 + B3 SINE B2 2 213 -3 1 1306 366 240 89 162 chr11 94555081 94555166 -27288690 + B4 SINE B4 93 181 -111 1 1306 302 203 0 15 chr11 94555172 94555237 -27288619 - RLTR18B LTR ERVK -4 508 445 1 1306 1408 57 5 30 chr11 94555237 94555435 -27288421 + B2_Mm1t SINE B2 1 193 0 1 1306 2435 156 38 49 chr11 94555793 94556239 -27287617 - RLTR18B LTR ERVK -71 441 1 1 1306 397 336 10 0 chr11 94556246 94556350 -27287506 + B4 SINE B4 186 290 -2 1 1306 453 186 186 0 chr11 94556452 94556565 -27287291 - B1_Mur2 SINE Alu -15 134 1 1 1306 437 224 107 43 chr11 94556619 94556759 -27287097 - B1F1 SINE Alu 0 149 1 1 1306 213 312 0 48 chr11 94557287 94557371 -27286485 + B4A SINE B4 15 94 -198 1 1306 306 0 0 0 chr11 94557400 94557434 -27286422 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1306 712 199 0 6 chr11 94557434 94557749 -27286107 + (CA)n Simple_repeat Simple_repeat 1 313 0 1 1306 1215 68 0 0 chr11 94557858 94558005 -27285851 + B1_Mus2 SINE Alu 1 147 0 1 1306 228 122 0 0 chr11 94558034 94558075 -27285781 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1306 306 352 56 0 chr11 94558103 94558228 -27285628 - L1MEg LINE L1 -4111 1973 1842 1 1306 855 104 29 7 chr11 94558228 94558364 -27285492 - B1_Mus1 SINE Alu 0 148 10 1 1306 415 259 21 90 chr11 94558260 94558404 -27285452 - MT2B LTR ERVL -337 264 131 1 1306 459 292 57 28 chr11 94558405 94558546 -27285310 - RSINE1 SINE B4 -19 146 2 1 1306 992 179 89 0 chr11 94558565 94558755 -27285101 - B3 SINE B2 -9 207 1 1 1306 735 209 7 26 chr11 94558766 94558918 -27284938 - B1F SINE Alu 0 149 1 1 1306 243 0 0 0 chr11 94559401 94559428 -27284428 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 1 1306 343 282 0 0 chr11 94559876 94559954 -27283902 + PB1D10 SINE Alu 27 104 -13 1 1306 446 238 115 0 chr11 94560036 94560158 -27283698 - ID_B1 SINE B4 -88 136 1 1 1306 188 67 33 0 chr11 94560195 94560225 -27283631 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 1306 1248 34 7 0 chr11 94560225 94560371 -27283485 - B1_Mus2 SINE Alu 0 147 1 1 1306 260 0 57 57 chr11 94560615 94560668 -27283188 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1 1306 1188 62 0 0 chr11 94560668 94560813 -27283043 - B1_Mus2 SINE Alu -2 145 1 1 1306 1201 171 22 50 chr11 94560819 94561041 -27282815 - B3 SINE B2 0 216 1 1 1306 843 256 29 24 chr11 94561057 94561082 -27282774 - B3 SINE B2 -7 209 184 1 1306 210 71 0 0 chr11 94561082 94561110 -27282746 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1306 843 256 29 24 chr11 94561110 94561292 -27282564 - B3 SINE B2 -33 183 1 1 1306 362 215 0 25 chr11 94561292 94561372 -27282484 - ID_B1 SINE B4 -38 186 109 1 1306 514 255 9 9 chr11 94561523 94561634 -27282222 - PB1D10 SINE Alu 0 117 7 1 1306 242 371 33 41 chr11 94561555 94561674 -27282182 - B4A SINE B4 -119 173 56 1 1306 1192 90 6 0 chr11 94561674 94561830 -27282026 + B2_Mm2 SINE B2 1 157 -38 1 1306 234 0 0 0 chr11 94561836 94561862 -27281994 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1 1306 234 118 0 0 chr11 94562490 94562524 -27281332 - B3 SINE B2 -182 34 1 1 1306 312 242 0 16 chr11 94562581 94562644 -27281212 + HAL1-3A_ME LINE L1 1968 2029 -829 1 1306 648 254 0 0 chr11 94563849 94564026 -27279830 + CT-rich Low_complexity Low_complexity 2 178 0 1 1306 207 161 0 0 chr11 94564026 94564057 -27279799 + polypyrimidine Low_complexity Low_complexity 2 32 0 1 1306 330 290 0 39 chr11 94564209 94564313 -27279543 + RSINE1 SINE B4 3 102 -63 1 1306 887 178 93 11 chr11 94564293 94564475 -27279381 + B3 SINE B2 20 216 0 1 1306 225 272 17 142 chr11 94564477 94564597 -27279259 + B4A SINE B4 74 178 -114 1 1306 735 145 59 46 chr11 94564604 94564756 -27279100 - ORR1A4 LTR MaLR -175 154 1 1 1306 305 277 34 137 chr11 94564756 94564787 -27279069 + PB1D9 SINE Alu 3 32 -88 1 1306 628 250 0 20 chr11 94564787 94564938 -27278918 - B1F1 SINE Alu -1 148 1 1 1306 305 277 34 137 chr11 94564938 94565023 -27278833 + PB1D9 SINE Alu 33 107 -13 1 1306 851 202 55 22 chr11 94565126 94565250 -27278606 - RMER6D LTR ERVK -79 641 513 1 1306 555 56 0 0 chr11 94565250 94565321 -27278535 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1306 315 0 0 0 chr11 94565321 94565355 -27278501 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1306 851 202 55 22 chr11 94565355 94565411 -27278445 - RMER6D LTR ERVK -208 512 455 1 1306 2240 119 72 0 chr11 94566308 94566643 -27277213 + ORR1B2 LTR MaLR 1 359 -8 1 1306 3930 149 54 29 chr11 94566650 94567339 -27276517 - RMER6D LTR ERVK 0 720 15 1 1306 1189 111 35 0 chr11 94567349 94567521 -27276335 + B2_Mm1t SINE B2 2 179 -14 1 1306 337 157 0 22 chr11 94567562 94567628 -27276228 + B2_Mm2 SINE B2 47 109 -107 1 1306 204 40 0 0 chr11 94567637 94567662 -27276194 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1306 840 286 95 0 chr11 94567842 94568094 -27275762 + MLT2B2 LTR ERVL 1 276 -239 1 1306 641 167 123 0 chr11 94568104 94568218 -27275638 + RSINE1 SINE B4 4 131 -34 1 1306 23 54 0 0 chr11 94568238 94568275 -27275581 + AT_rich Low_complexity Low_complexity 1 37 0 1 1306 1262 41 0 0 chr11 94568284 94568431 -27275425 + B1_Mus2 SINE Alu 1 147 0 1 1306 1342 85 0 36 chr11 94568444 94568639 -27275217 + B2_Mm2 SINE B2 2 189 -6 1 1306 499 346 31 50 chr11 94568639 94568903 -27274953 + MLT2B2 LTR ERVL 284 543 -19 1 1306 890 294 103 21 chr11 94569110 94569392 -27274464 - MTE2b LTR MaLR -74 305 1 1 1306 1469 174 61 213 chr11 94569898 94570086 -27273770 - MTD LTR MaLR -2 417 224 1 1306 603 0 0 0 chr11 94570086 94570153 -27273703 + (TTC)n Simple_repeat Simple_repeat 2 68 0 1 1306 1469 174 61 213 chr11 94570153 94570453 -27273403 - MTD LTR MaLR -196 223 3 1 1306 626 146 138 58 chr11 94570908 94571046 -27272810 + B1_Mur3 SINE Alu 1 149 0 1 1306 1104 138 55 6 chr11 94571066 94571248 -27272608 - B2_Mm2 SINE B2 -2 193 3 1 1306 446 229 6 125 chr11 94571276 94571333 -27272523 + MT2B LTR ERVL 117 154 -447 1 1306 741 147 0 0 chr11 94571333 94571442 -27272414 + B1_Mur3 SINE Alu 2 110 -39 1 1306 1746 183 82 3 chr11 94571508 94571864 -27271992 + ORR1C2 LTR MaLR 1 384 0 1 1306 264 297 14 0 chr11 94571959 94572033 -27271823 - ID2 SINE ID -7 76 2 1 1306 216 0 0 0 chr11 94572041 94572065 -27271791 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1306 983 34 0 0 chr11 94572065 94572183 -27271673 - B1_Mm SINE Alu -10 137 20 2 1306 396 0 0 0 chr11 94572219 94572263 -27271593 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1306 264 271 165 60 chr11 94572264 94572347 -27271509 - PB1D10 SINE Alu -28 89 2 2 1306 249 135 0 148 chr11 94573582 94573593 -27270263 - PB1D10 SINE Alu -1 116 108 2 1306 243 0 0 0 chr11 94573593 94573620 -27270236 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1306 249 147 0 146 chr11 94573620 94573690 -27270166 - PB1D10 SINE Alu -12 115 59 2 1306 345 218 0 0 chr11 94573709 94573792 -27270064 + T-rich Low_complexity Low_complexity 19 101 0 2 1306 1211 61 0 0 chr11 94573792 94573939 -27269917 - B1_Mm SINE Alu 0 147 1 2 1306 345 218 0 0 chr11 94573939 94573956 -27269900 + T-rich Low_complexity Low_complexity 2 18 0 2 1306 847 197 79 37 chr11 94573987 94574000 -27269856 - Lx3C LINE L1 -1 6975 6966 2 1306 204 40 0 0 chr11 94574000 94574025 -27269831 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2 1306 847 197 79 37 chr11 94574025 94574227 -27269629 - Lx3C LINE L1 -11 6965 6751 2 1306 450 0 0 0 chr11 94574812 94574862 -27268994 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1306 1596 173 100 60 chr11 94575504 94575873 -27267983 + ORR1C2 LTR MaLR 1 384 0 2 1306 579 31 0 58 chr11 94576092 94576196 -27267660 + (TTCTC)n Simple_repeat Simple_repeat 5 102 0 2 1306 504 86 0 0 chr11 94576572 94576642 -27267214 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 2 1306 1369 50 44 6 chr11 94576648 94576828 -27267028 - B2_Mm2 SINE B2 -7 188 2 2 1306 635 263 45 10 chr11 94577050 94577250 -27266606 - MER57E1 LTR ERV1 -8 364 158 2 1306 449 17 0 17 chr11 94577521 94577580 -27266276 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1306 316 211 40 40 chr11 94577643 94577717 -27266139 - MER34A1 LTR ERV1 -363 224 151 2 1306 756 233 27 0 chr11 94577790 94577940 -27265916 + ID_B1 SINE B4 43 196 -28 2 1306 186 43 0 0 chr11 94577955 94577978 -27265878 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1306 3116 244 72 26 chr11 94578110 94578526 -27265330 + Tigger1 DNA MER2_type 68 505 -1913 2 1306 315 0 0 0 chr11 94578526 94578561 -27265295 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 2 1306 3116 244 72 26 chr11 94578561 94579002 -27264854 + Tigger1 DNA MER2_type 506 965 -1453 2 1306 411 227 121 0 chr11 94579050 94579158 -27264698 - PB1D10 SINE Alu -8 119 1 2 1306 596 178 20 0 chr11 94579180 94579281 -27264575 - PB1D10 SINE Alu 0 117 15 2 1306 224 348 92 34 chr11 94579183 94579302 -27264554 - B4 SINE B4 -87 205 80 2 1306 248 91 23 0 chr11 94579341 94579385 -27264471 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1306 465 132 72 0 chr11 94579393 94579476 -27264380 - RLTR11A2 LTR ERVK -72 455 367 2 1306 291 247 77 13 chr11 94579495 94579573 -27264283 - RLTR11A2 LTR ERVK -443 84 2 2 1306 422 264 18 0 chr11 94579573 94579675 -27264181 - MTD LTR MaLR -291 128 25 2 1306 238 245 0 36 chr11 94579902 94579957 -27263899 - MER34A1 LTR ERV1 -497 90 38 2 1306 223 217 33 0 chr11 94579966 94580026 -27263830 + BC1_Mm scRNA scRNA 2 63 -89 2 1306 820 261 82 24 chr11 94580936 94581191 -27262665 - B4A SINE B4 -18 274 5 2 1306 378 186 259 6 chr11 94581227 94581327 -27262529 - B3A SINE B2 -77 118 2 2 1306 396 0 0 0 chr11 94581332 94581376 -27262480 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1306 261 0 0 0 chr11 94581376 94581404 -27262452 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1306 1173 56 21 0 chr11 94581426 94581570 -27262286 - B1_Mus2 SINE Alu 0 147 1 2 1306 1031 182 55 10 chr11 94581583 94581783 -27262073 - B3 SINE B2 -5 211 3 2 1306 403 236 112 16 chr11 94581810 94581821 -27262035 - B1F1 SINE Alu -1 148 139 2 1306 1277 68 96 6 chr11 94581821 94581998 -27261858 - B2_Mm2 SINE B2 -1 194 2 2 1306 403 236 112 16 chr11 94581998 94582111 -27261745 - B1F1 SINE Alu -11 138 12 2 1306 574 254 88 0 chr11 94582272 94582453 -27261403 + L1MC2 LINE L1 6009 6205 -139 2 1306 280 228 35 0 chr11 94582463 94582520 -27261336 + ID4_ SINE ID 22 80 -3 2 1306 22 0 0 0 chr11 94582528 94582550 -27261306 + AT_rich Low_complexity Low_complexity 1 22 0 2 1306 262 271 92 15 chr11 94582574 94582705 -27261151 + L1MC2 LINE L1 6203 6343 -1 2 1306 280 336 62 69 chr11 94582767 94582927 -27260929 - RSINE1 SINE B4 -4 161 3 2 1306 212 0 36 0 chr11 94583560 94583588 -27260268 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1306 183 184 0 0 chr11 94583621 94583659 -27260197 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1306 547 287 39 17 chr11 94583659 94583840 -27260016 - B3A SINE B2 -13 185 1 2 1306 196 297 66 47 chr11 94584195 94584301 -27259555 + MIR SINE MIR 32 139 -123 2 1306 1444 228 80 0 chr11 94584551 94584902 -27258954 - MTEb LTR MaLR 0 379 1 2 1306 863 234 98 0 chr11 94585037 94585221 -27258635 - ID_B1 SINE B4 -22 202 1 2 1306 1352 76 43 0 chr11 94585347 94585531 -27258325 + B2_Mm1a SINE B2 1 192 -1 2 1306 423 0 0 0 chr11 94585552 94585599 -27258257 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1306 393 322 40 80 chr11 94585725 94585941 -27257915 - L1MB5 LINE L1 -299 5875 5659 2 1306 2266 75 57 31 chr11 94585941 94586258 -27257598 - ORR1A2 LTR MaLR -2 325 1 2 1306 393 322 40 80 chr11 94586258 94586341 -27257515 - L1MB5 LINE L1 -516 5658 5588 2 1306 190 316 91 10 chr11 94586430 94586529 -27257327 + MIRm SINE MIR 157 263 -13 2 1306 527 209 20 0 chr11 94586556 94586656 -27257200 - B1F SINE Alu -8 141 47 2 1306 241 304 102 118 chr11 94587033 94587514 -27256342 - L2a LINE L2 -1 3425 2914 2 1306 616 314 158 25 chr11 94587709 94588070 -27255786 + MLT1F LTR MaLR 11 419 -129 2 1306 750 23 6 4 chr11 94588070 94588177 -27255679 + B1_Mus1 SINE Alu 2 109 -11 2 1306 652 282 87 0 chr11 94588380 94588586 -27255270 - ID_B1 SINE B4 0 224 1 2 1306 408 40 0 0 chr11 94588673 94588723 -27255133 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1306 216 0 0 0 chr11 94588723 94588747 -27255109 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1306 881 182 48 77 chr11 94588747 94588955 -27254901 - MT2B LTR ERVL -55 546 345 2 1306 557 218 36 50 chr11 94588953 94589093 -27254763 - ORR1C1 LTR MaLR -238 140 3 2 1306 703 215 7 20 chr11 94589126 94589273 -27254583 + B1_Mur2 SINE Alu 3 147 -2 2 1306 1300 121 21 0 chr11 94589294 94589484 -27254372 + B2_Mm2 SINE B2 1 194 -1 2 1306 833 204 84 11 chr11 94589486 94589664 -27254192 + B3 SINE B2 26 216 0 2 1306 966 224 28 5 chr11 94589744 94589955 -27253901 - B3 SINE B2 0 216 1 2 1306 825 262 30 10 chr11 94589977 94590174 -27253682 + ID_B1 SINE B4 7 207 -17 2 1306 180 111 0 0 chr11 94590174 94590201 -27253655 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 1306 261 0 0 0 chr11 94590202 94590231 -27253625 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1306 514 277 17 86 chr11 94590233 94590407 -27253449 + ID_B1 SINE B4 52 213 -11 2 1306 840 117 25 0 chr11 94590286 94590406 -27253450 + B1_Mus1 SINE Alu 14 136 -12 2 1306 398 225 98 98 chr11 94590406 94590449 -27253407 + MT2B LTR ERVL 177 339 -262 2 1306 952 147 6 11 chr11 94590572 94590751 -27253105 + CT-rich Low_complexity Low_complexity 3 180 0 2 1306 199 345 24 57 chr11 94590921 94591044 -27252812 + MIRc SINE MIR 23 141 -127 2 1306 868 210 87 0 chr11 94591084 94591279 -27252577 + B3 SINE B2 1 212 -4 2 1306 776 196 0 8 chr11 94591331 94591465 -27252391 + B1_Mur2 SINE Alu 1 133 -16 2 1306 252 0 0 0 chr11 94591467 94591495 -27252361 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 2 1306 393 181 157 0 chr11 94591520 94591603 -27252253 + B1_Mus2 SINE Alu 52 147 0 2 1306 371 227 11 22 chr11 94591868 94591958 -27251898 - B3 SINE B2 -12 204 116 2 1306 255 333 13 0 chr11 94591989 94592064 -27251792 - ID2 SINE ID -6 77 2 2 1306 1056 80 44 142 chr11 94592083 94592202 -27251654 + B2_Mm1a SINE B2 1 117 -76 2 1306 1175 68 0 0 chr11 94592202 94592349 -27251507 + B1_Mus2 SINE Alu 1 147 0 2 1306 1056 80 44 142 chr11 94592349 94592434 -27251422 + B2_Mm1a SINE B2 118 185 -8 2 1306 542 103 11 0 chr11 94593145 94593232 -27250624 + (GGA)n Simple_repeat Simple_repeat 1 88 0 2 1306 811 133 35 7 chr11 94593377 94593521 -27250335 - B1_Mur4 SINE Alu -1 149 2 2 1306 372 292 22 0 chr11 94593713 94593802 -27250054 + PB1D10 SINE Alu 19 109 -8 2 1306 392 146 270 0 chr11 94593807 94593896 -27249960 + PB1D9 SINE Alu 1 113 -7 2 1306 285 113 149 40 chr11 94594507 94594581 -27249275 - ID4 SINE ID -1 82 1 2 1306 224 367 64 29 chr11 94594796 94594967 -27248889 + L2a LINE L2 3228 3404 -22 2 1306 996 146 0 0 chr11 94594969 94595113 -27248743 + B1_Mur4 SINE Alu 1 144 -6 2 1306 947 72 255 0 chr11 94595124 94595277 -27248579 + B2_Mm2 SINE B2 3 194 -1 2 1306 440 99 0 14 chr11 94595356 94595428 -27248428 + (TGAA)n Simple_repeat Simple_repeat 2 72 0 2 1306 535 207 50 41 chr11 94595665 94595786 -27248070 - B1_Mur1 SINE Alu -23 126 5 2 1306 254 260 81 99 chr11 94595696 94595807 -27248049 - B4 SINE B4 -113 179 71 2 1306 928 134 0 7 chr11 94595923 94596066 -27247790 - B1_Mus1 SINE Alu -6 142 1 2 1306 257 187 40 13 chr11 94596066 94596142 -27247714 - L1M3 LINE L1 -2977 3163 3086 2 1306 305 264 14 14 chr11 94596324 94596397 -27247459 - ID4_ SINE ID -2 81 9 2 1306 628 127 170 18 chr11 94596473 94596585 -27247271 - B1_Mur2 SINE Alu 0 149 21 2 1306 1182 68 0 14 chr11 94596614 94596762 -27247094 + B1_Mus2 SINE Alu 2 147 0 2 1306 213 39 0 0 chr11 94596762 94596788 -27247068 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1306 309 294 138 0 chr11 94596802 94596867 -27246989 + ID SINE ID 3 82 -142 2 1306 257 241 184 0 chr11 94596867 94596954 -27246902 + B1_Mus2 SINE Alu 2 104 -43 3 1306 844 104 93 35 chr11 94596999 94597166 -27246690 - B2_Mm2 SINE B2 -16 177 1 3 1306 317 222 32 0 chr11 94597166 94597196 -27246660 + B1_Mus1 SINE Alu 84 115 -33 3 1306 1609 170 161 8 chr11 94597196 94597575 -27246281 + RMER10A LTR ERVL 1 437 -5 3 1306 328 0 0 100 chr11 94597578 94597658 -27246198 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 3 1306 848 119 11 33 chr11 94597666 94597848 -27246008 + CT-rich Low_complexity Low_complexity 3 180 0 3 1306 744 177 49 14 chr11 94597909 94598052 -27245804 + B1_Mur2 SINE Alu 2 149 0 3 1306 221 254 16 0 chr11 94598470 94598533 -27245323 + GA-rich Low_complexity Low_complexity 2 65 0 3 1306 978 245 98 12 chr11 94599052 94599308 -27244548 + MTE2b LTR MaLR 102 379 0 3 1306 215 31 0 30 chr11 94599862 94599895 -27243961 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3 1306 1357 181 145 23 chr11 94599935 94600245 -27243611 + RLTR14 LTR ERV1 3 350 -32 3 1306 248 158 0 0 chr11 94600232 94600270 -27243586 - RLTR14 LTR ERV1 -143 239 202 3 1306 218 200 0 0 chr11 94600324 94600374 -27243482 + A-rich Low_complexity Low_complexity 1 50 0 3 1306 1176 75 0 0 chr11 94600377 94600524 -27243332 + B1_Mus1 SINE Alu 1 147 -1 3 1306 323 75 0 0 chr11 94600565 94600605 -27243251 + RLTR14-int LTR ERV1 946 985 -4332 3 1306 1010 139 24 18 chr11 94600630 94600798 -27243058 + B2_Mm1a SINE B2 2 170 -23 3 1306 791 66 9 0 chr11 94600809 94600915 -27242941 + B1_Mus2 SINE Alu 41 147 0 3 1306 7236 186 55 32 chr11 94600916 94600927 -27242929 + RLTR14-int LTR ERV1 1010 1018 -4299 3 1306 329 0 0 24 chr11 94600927 94600969 -27242887 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 3 1306 7236 186 55 32 chr11 94600969 94601501 -27242355 + RLTR14-int LTR ERV1 1019 1566 -3751 3 1306 345 47 0 0 chr11 94601501 94601544 -27242312 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 3 1306 7236 157 82 24 chr11 94601544 94603147 -27240709 + RLTR14-int LTR ERV1 1567 3262 -2055 3 1306 1728 179 57 26 chr11 94604338 94604687 -27239169 + RLTR14-int LTR ERV1 3257 3616 -1701 3 1306 1313 166 252 23 chr11 94604689 94604987 -27238869 + RLTR14-int LTR ERV1 4096 4461 -856 3 1306 194 274 44 67 chr11 94604987 94605077 -27238779 + L4 LINE RTE 504 591 -1438 3 1306 2758 105 35 2 chr11 94605077 94605479 -27238377 + RLTR14-int LTR ERV1 4551 4965 -352 3 1306 320 163 0 0 chr11 94605488 94605537 -27238319 + B3 SINE B2 79 127 -89 3 1306 538 101 38 0 chr11 94605566 94605645 -27238211 + RLTR14-int LTR ERV1 4972 5053 -264 3 1306 1841 93 30 19 chr11 94605668 94605799 -27238057 + RMER19A LTR ERVK 431 569 -168 3 1306 4890 53 3 0 chr11 94605799 94606384 -27237472 + LTRIS_Mus LTR ERV1 1 587 0 3 1306 1841 141 35 45 chr11 94606384 94606569 -27237287 + RMER19A LTR ERVK 570 902 0 3 1306 253 292 88 107 chr11 94606652 94606764 -27237092 - MLT1K LTR MaLR -3 592 489 3 1306 1959 137 10 7 chr11 94606764 94607072 -27236784 - RLTR27 LTR ERVK 0 309 1 3 1306 253 292 88 107 chr11 94607072 94607231 -27236625 - MLT1K LTR MaLR -107 488 326 3 1306 1113 62 14 0 chr11 94607329 94607473 -27236383 + B1_Mus1 SINE Alu 2 147 -1 3 1306 1186 141 7 191 chr11 94607660 94607932 -27235924 + RMER19B LTR ERVK 1 222 -680 3 1306 2311 205 89 17 chr11 94607958 94608483 -27235373 + RMER19B LTR ERVK 339 901 -1 3 1306 579 288 165 5 chr11 94608960 94609166 -27234690 + B4 SINE B4 1 239 -53 3 1306 324 0 0 0 chr11 94609179 94609215 -27234641 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1306 231 36 0 0 chr11 94609227 94609255 -27234601 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1306 450 235 0 0 chr11 94609273 94609354 -27234502 + PB1D10 SINE Alu 22 102 -15 3 1306 411 232 25 127 chr11 94609600 94609651 -27234205 + MT2B2 LTR ERVL 116 165 -419 3 1306 971 208 35 0 chr11 94609651 94609848 -27234008 + B3 SINE B2 2 205 -11 3 1306 411 232 25 127 chr11 94609848 94609954 -27233902 + MT2B2 LTR ERVL 166 257 -327 3 1306 1126 37 0 0 chr11 94609859 94609993 -27233863 + B1_Mus1 SINE Alu 9 142 -6 3 1306 564 56 0 0 chr11 94609995 94610067 -27233789 + (GAAAA)n Simple_repeat Simple_repeat 3 74 0 3 1306 685 292 42 112 chr11 94610265 94610577 -27233279 + B4A SINE B4 1 290 -2 3 1306 248 231 274 7 chr11 94610605 94610740 -27233116 - MTD LTR MaLR -21 358 188 3 1306 294 200 257 10 chr11 94610743 94610844 -27233012 - MT2A LTR ERVL -132 401 276 3 1306 250 211 130 13 chr11 94610839 94610916 -27232940 - MTD LTR MaLR -326 93 8 3 1306 326 173 13 0 chr11 94610951 94611026 -27232830 + (CATA)n Simple_repeat Simple_repeat 1 76 0 3 1306 658 257 0 83 chr11 94611216 94611280 -27232576 - B1_Mur1 SINE Alu -5 144 87 3 1306 4955 51 3 0 chr11 94611280 94611865 -27231991 + LTRIS_Mus LTR ERV1 1 587 0 3 1306 659 257 0 83 chr11 94611865 94611957 -27231899 - B1_Mur1 SINE Alu -63 86 1 3 1306 192 40 0 0 chr11 94612004 94612029 -27231827 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1306 914 199 191 21 chr11 94612430 94612500 -27231356 - MT2A LTR ERVL 0 533 466 3 1306 228 35 0 0 chr11 94612500 94612529 -27231327 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1306 914 199 191 21 chr11 94612529 94612699 -27231157 - MT2A LTR ERVL -68 465 252 3 1306 323 328 94 29 chr11 94612708 94612723 -27231133 - MTEb LTR MaLR -232 147 1 3 1306 679 211 8 0 chr11 94612723 94612846 -27231010 - MT2A LTR ERVL -409 124 1 3 1306 400 244 0 53 chr11 94612973 94613068 -27230788 - B3A SINE B2 -104 94 5 3 1306 215 229 16 16 chr11 94613119 94613181 -27230675 + CT-rich Low_complexity Low_complexity 2 63 0 3 1306 1119 150 6 6 chr11 94613186 94613360 -27230496 - B2_Mm2 SINE B2 -21 174 1 3 1306 1443 240 195 16 chr11 94613435 94613922 -27229934 - RMER15 LTR ERVL -1 574 1 3 1306 1135 75 0 13 chr11 94614007 94614156 -27229700 - B1_Mus1 SINE Alu 0 148 2 3 1306 775 257 39 5 chr11 94615758 94615965 -27227891 + B3 SINE B2 2 215 -1 3 1306 754 161 89 0 chr11 94615972 94616096 -27227760 + B1_Mus1 SINE Alu 1 135 -13 3 1306 369 43 0 0 chr11 94616106 94616153 -27227703 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1306 369 224 15 0 chr11 94616229 94616296 -27227560 - ID4_ SINE ID -13 70 3 3 1306 225 197 101 101 chr11 94616326 94616405 -27227451 - PB1 SINE Alu -48 79 1 3 1306 778 141 66 15 chr11 94616873 94617028 -27226828 + B3 SINE B2 1 164 -29 3 1306 231 152 0 0 chr11 94617233 94617266 -27226590 + 4.5SRNA scRNA scRNA 54 86 -8 3 1306 337 102 20 0 chr11 94617237 94617286 -27226570 + B1_Mus2 SINE Alu 61 110 -37 3 1306 255 207 129 35 chr11 94619741 94619826 -27224030 + ID_B1 SINE B4 128 220 -4 3 1306 241 226 0 36 chr11 94619911 94619966 -27223890 - PB1D9 SINE Alu -85 63 10 3 1306 333 301 34 50 chr11 94620002 94620121 -27223735 - PB1D9 SINE Alu 0 120 4 3 1306 239 158 0 0 chr11 94620472 94620510 -27223346 + PB1D9 SINE Alu 2 39 -81 3 1306 224 226 0 0 chr11 94620737 94620790 -27223066 + CT-rich Low_complexity Low_complexity 1 53 0 3 1306 668 199 48 28 chr11 94620834 94620979 -27222877 - B1_Mus2 SINE Alu -2 148 1 3 1306 430 230 52 17 chr11 94621010 94621125 -27222731 + PB1D9 SINE Alu 2 120 0 3 1306 337 83 203 27 chr11 94621469 94621543 -27222313 + B1_Mur3 SINE Alu 62 148 -1 3 1306 304 225 208 0 chr11 94622539 94622659 -27221197 + B1_Mur2 SINE Alu 5 149 0 3 1306 603 213 62 23 chr11 94622660 94622790 -27221066 + B1_Mur4 SINE Alu 1 135 -15 3 1306 628 261 85 25 chr11 94622813 94623013 -27220843 + B3 SINE B2 5 216 0 3 1306 706 188 64 21 chr11 94623112 94623253 -27220603 - B1_Mur2 SINE Alu 0 149 3 3 1306 390 21 0 0 chr11 94623341 94623388 -27220468 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1306 201 159 0 0 chr11 94623388 94623432 -27220424 + GA-rich Low_complexity Low_complexity 1 44 0 3 1306 809 206 7 0 chr11 94623469 94623615 -27220241 - B1_Mur4 SINE Alu 0 150 4 3 1306 22 0 0 0 chr11 94623628 94623650 -27220206 + AT_rich Low_complexity Low_complexity 1 22 0 3 1306 831 204 0 0 chr11 94623652 94623794 -27220062 + B1_Mus1 SINE Alu 1 142 -6 3 1306 2102 118 12 64 chr11 94625500 94625786 -27218070 + ORR1A2 LTR MaLR 1 276 -51 3 1306 1180 43 0 21 chr11 94625786 94625930 -27217926 + B1_Mus1 SINE Alu 2 142 -6 3 1306 211 0 28 56 chr11 94625933 94625969 -27217887 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1306 2102 118 12 64 chr11 94625969 94626022 -27217834 + ORR1A2 LTR MaLR 277 326 -1 3 1306 9397 152 80 23 chr11 94626023 94626221 -27217635 + ORR1A2-int LTR MaLR 1 194 -1769 3 1306 1223 118 38 0 chr11 94626221 94626407 -27217449 - B2_Mm2 SINE B2 0 195 3 3 1306 9397 152 80 23 chr11 94626407 94628065 -27215791 + ORR1A2-int LTR MaLR 195 1963 0 3 1306 2351 121 6 0 chr11 94628065 94628388 -27215468 + ORR1A2 LTR MaLR 1 325 -2 3 1306 634 112 224 0 chr11 94628424 94628540 -27215316 - B1_Mus2 SINE Alu 0 147 6 3 1306 199 240 40 0 chr11 94628664 94628714 -27215142 - L3 LINE CR1 -2266 2223 2172 3 1306 670 202 16 0 chr11 94628965 94629089 -27214767 - B1_Mus1 SINE Alu -21 127 2 3 1306 1133 118 6 12 chr11 94629572 94629743 -27214113 + B2_Mm2 SINE B2 1 170 -25 3 1306 195 69 0 0 chr11 94629775 94629804 -27214052 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1306 632 325 49 89 chr11 94629967 94630271 -27213585 + B4A SINE B4 1 292 0 3 1306 485 262 68 18 chr11 94630299 94630462 -27213394 - MTE2a LTR MaLR -21 358 188 3 1306 1021 226 59 102 chr11 94630465 94630819 -27213037 - MT2A LTR ERVL -132 401 63 3 1306 400 271 193 44 chr11 94630627 94630897 -27212959 - MTD LTR MaLR -102 317 8 3 1306 333 0 0 0 chr11 94630929 94630966 -27212890 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1306 826 162 13 60 chr11 94631234 94631385 -27212471 - B1_Mur1 SINE Alu -5 144 1 3 1306 235 67 0 0 chr11 94631449 94631479 -27212377 + B1_Mur3 SINE Alu 88 117 -32 3 1306 492 48 0 0 chr11 94631479 94631542 -27212314 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1306 903 240 261 86 chr11 94631937 94632389 -27211467 - MT2A LTR ERVL 0 533 3 3 1306 345 262 523 19 chr11 94632475 94632616 -27211240 - B3A SINE B2 -1 215 4 3 1306 1128 122 17 6 chr11 94632691 94632864 -27210992 - B2_Mm2 SINE B2 -20 175 1 3 1306 1628 209 180 53 chr11 94632938 94633448 -27210408 - RMER15 LTR ERVL 0 575 1 3 1306 200 361 36 57 chr11 94633717 94633976 -27209880 + L2c LINE L2 3031 3295 -80 3 1307 219 273 91 0 chr11 94635058 94635124 -27208732 + ID4_ SINE ID 1 72 -11 3 1307 679 236 0 41 chr11 94635153 94635299 -27208557 + B1F SINE Alu 1 140 -9 3 1307 193 308 148 57 chr11 94635557 94635767 -27208089 - L2 LINE L2 -864 2555 2327 3 1307 618 164 103 0 chr11 94636099 94636215 -27207641 + B1_Mur4 SINE Alu 2 129 -21 4 1307 234 347 99 0 chr11 94636656 94636869 -27206987 - L2 LINE L2 -1228 2191 1958 3 1307 610 176 63 84 chr11 94637085 94637228 -27206628 - B1_Mur1 SINE Alu 0 149 10 4 1307 1200 186 22 9 chr11 94637605 94637827 -27206029 - MTC LTR MaLR 0 421 197 4 1307 742 285 20 15 chr11 94637885 94638088 -27205768 + B3 SINE B2 8 211 -5 4 1307 606 151 0 11 chr11 94638093 94638187 -27205669 + B1_Mus1 SINE Alu 1 93 -55 4 1307 277 266 12 48 chr11 94638289 94638372 -27205484 - ID4_ SINE ID -1 82 3 4 1307 329 151 18 39 chr11 94638765 94638844 -27205012 + B1_Mus2 SINE Alu 41 112 -37 4 1307 186 303 64 53 chr11 94639776 94639870 -27203986 + L3 LINE CR1 3751 3845 -644 4 1307 313 269 233 6 chr11 94641199 94641375 -27202481 + ID_B1 SINE B4 5 220 -4 4 1307 268 200 0 20 chr11 94641467 94641518 -27202338 - PB1D9 SINE Alu -64 56 7 4 1307 234 281 15 15 chr11 94641518 94641532 -27202324 - B4 SINE B4 -151 141 77 4 1307 360 262 45 45 chr11 94641535 94641647 -27202209 - PB1D7 SINE Alu -6 114 3 4 1307 342 0 0 0 chr11 94641649 94641687 -27202169 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1307 221 57 0 28 chr11 94642281 94642317 -27201539 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1307 605 217 23 0 chr11 94642358 94642487 -27201369 - B1_Mus2 SINE Alu -1 146 15 4 1307 249 279 2 12 chr11 94642536 94642621 -27201235 + PB1D9 SINE Alu 32 120 0 4 1307 399 118 132 0 chr11 94642981 94643057 -27200799 + B1_Mus2 SINE Alu 62 147 0 4 1307 460 219 104 9 chr11 94644056 94644162 -27199694 + B1_Mur1 SINE Alu 1 116 -33 4 1307 216 0 0 0 chr11 94644176 94644200 -27199656 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1307 267 31 0 0 chr11 94644248 94644280 -27199576 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1307 249 170 128 0 chr11 94644305 94644352 -27199504 - B2_Mm2 SINE B2 -94 101 49 4 1307 928 150 53 12 chr11 94644402 94644571 -27199285 - B2_Mm1t SINE B2 -13 180 5 4 1307 598 179 70 26 chr11 94644576 94644691 -27199165 + B1_Mur3 SINE Alu 15 134 -15 4 1307 702 281 62 33 chr11 94644709 94644819 -27199037 + B3 SINE B2 1 114 -102 4 1307 3783 105 23 11 chr11 94644819 94645379 -27198477 + RMER2 LTR ERV1 1 567 0 4 1307 702 281 62 33 chr11 94645379 94645478 -27198378 + B3 SINE B2 115 216 0 4 1307 827 193 14 0 chr11 94645585 94645730 -27198126 - B1_Mur2 SINE Alu 0 149 3 4 1307 246 32 0 0 chr11 94645823 94645854 -27198002 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1307 183 80 0 0 chr11 94645854 94645878 -27197978 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1307 905 137 7 46 chr11 94645913 94646066 -27197790 - B1_Mur4 SINE Alu 0 150 4 4 1307 25 0 0 0 chr11 94646078 94646103 -27197753 + AT_rich Low_complexity Low_complexity 1 25 0 4 1307 933 169 0 0 chr11 94646103 94646251 -27197605 + B1_Mus1 SINE Alu 1 148 0 4 1307 378 0 0 0 chr11 94648150 94648192 -27195664 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1307 997 184 86 5 chr11 94648446 94648643 -27195213 + B3 SINE B2 1 213 -3 4 1307 696 286 85 60 chr11 94648834 94649036 -27194820 + B4A SINE B4 1 217 -75 4 1307 183 80 0 0 chr11 94649036 94649061 -27194795 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 1307 696 286 85 60 chr11 94649061 94649141 -27194715 + B4A SINE B4 218 289 -3 4 1307 462 273 64 13 chr11 94649170 94649326 -27194530 - MTE2a LTR MaLR -22 357 194 4 1307 962 231 50 56 chr11 94649342 94649644 -27194212 - MT2A LTR ERVL -163 370 71 4 1307 329 311 92 7 chr11 94649565 94649717 -27194139 - MTE2a LTR MaLR -247 172 8 4 1307 345 219 47 9 chr11 94649735 94649841 -27194015 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 1307 573 247 12 88 chr11 94650042 94650202 -27193654 - B1_Mur2 SINE Alu -1 148 1 4 1307 234 154 18 88 chr11 94650266 94650299 -27193557 + B1_Mur4 SINE Alu 89 121 -29 4 1307 321 47 0 0 chr11 94650299 94650342 -27193514 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1307 690 13 0 0 chr11 94650342 94650420 -27193436 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 1307 234 154 18 88 chr11 94650420 94650442 -27193414 + B1_Mur4 SINE Alu 122 140 -10 4 1307 901 258 5 27 chr11 94650842 94651065 -27192791 - MT2B LTR ERVL 0 601 384 4 1307 1168 56 7 0 chr11 94651129 94651273 -27192583 + B1_Mus1 SINE Alu 2 146 -2 4 1307 503 204 0 0 chr11 94651322 94651410 -27192446 - MT2B LTR ERVL -445 88 1 4 1307 384 265 0 64 chr11 94651526 94651635 -27192221 - B3A SINE B2 -94 104 3 4 1307 582 117 18 9 chr11 94651682 94651794 -27192062 + (TCC)n Simple_repeat Simple_repeat 2 114 0 4 1307 1046 180 5 11 chr11 94651795 94651980 -27191876 - B2_Mm2 SINE B2 -10 185 2 4 1307 1451 239 166 14 chr11 94652069 94652515 -27191341 - RMER15 LTR ERVL -14 561 48 4 1307 1179 62 14 0 chr11 94652627 94652772 -27191084 + B1_Mus1 SINE Alu 1 147 -1 4 1307 201 158 0 0 chr11 94652773 94652811 -27191045 + A-rich Low_complexity Low_complexity 1 38 0 4 1307 632 48 12 0 chr11 94652821 94652905 -27190951 + (GAAAA)n Simple_repeat Simple_repeat 4 88 0 4 1307 893 171 6 0 chr11 94653481 94653656 -27190200 + GA-rich Low_complexity Low_complexity 3 178 0 4 1307 1227 111 10 10 chr11 94653703 94653895 -27189961 + B2_Mm1t SINE B2 1 192 -1 4 1307 240 35 0 0 chr11 94654778 94654807 -27189049 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1307 908 120 15 0 chr11 94654809 94654942 -27188914 - B1_Mus1 SINE Alu -12 136 2 4 1307 245 250 94 0 chr11 94655055 94655119 -27188737 + ID4_ SINE ID 3 72 -11 4 1307 269 162 313 43 chr11 94655160 94655275 -27188581 - B2_Mm2 SINE B2 -2 193 48 4 1307 990 145 12 6 chr11 94655341 94655501 -27188355 - B2_Mm1t SINE B2 -32 161 1 4 1307 272 260 51 13 chr11 94655567 94655645 -27188211 - ID2 SINE ID -1 82 2 4 1307 766 261 39 5 chr11 94655771 94655979 -27187877 + B3 SINE B2 2 216 0 4 1307 781 161 85 0 chr11 94655985 94656115 -27187741 + B1_Mus1 SINE Alu 1 141 -7 4 1307 510 17 0 0 chr11 94656152 94656211 -27187645 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 4 1307 309 221 34 11 chr11 94656282 94656353 -27187503 - BC1_Mm scRNA scRNA -80 72 4 4 1307 257 264 68 27 chr11 94656374 94656448 -27187408 - B1F SINE Alu -49 100 24 4 1307 633 170 125 8 chr11 94656952 94657102 -27186754 + B3 SINE B2 1 166 -27 4 1307 314 106 21 0 chr11 94657315 94657362 -27186494 + B1_Mus2 SINE Alu 63 110 -37 4 1307 253 290 259 0 chr11 94659682 94659844 -27184012 + ID_B1 SINE B4 17 220 -4 4 1307 1135 96 0 0 chr11 94659889 94660035 -27183821 + B1_Mus2 SINE Alu 2 147 0 4 1307 267 207 136 17 chr11 94660099 94660158 -27183698 - PB1D9 SINE Alu -77 72 7 4 1307 329 272 33 50 chr11 94660170 94660290 -27183566 - PB1D9 SINE Alu 0 120 3 4 1307 223 259 0 0 chr11 94660895 94660953 -27182903 + CT-rich Low_complexity Low_complexity 1 58 0 4 1307 529 188 24 63 chr11 94660970 94661118 -27182738 - B1_Mus1 SINE Alu -2 147 8 4 1307 211 191 0 0 chr11 94661633 94661662 -27182194 + A-rich Low_complexity Low_complexity 1 29 0 4 1307 279 289 52 17 chr11 94661662 94661778 -27182078 + PB1D9 SINE Alu 1 120 0 4 1307 211 191 0 0 chr11 94661778 94661795 -27182061 + A-rich Low_complexity Low_complexity 30 46 0 4 1307 385 132 132 0 chr11 94662142 94662218 -27181638 + B1_Mus2 SINE Alu 62 147 0 4 1307 243 0 0 0 chr11 94662386 94662413 -27181443 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1307 1148 76 0 0 chr11 94662413 94662557 -27181299 - B1_Mus2 SINE Alu 0 147 4 4 1307 502 181 104 9 chr11 94663404 94663510 -27180346 + B1_Mur1 SINE Alu 1 116 -33 4 1307 279 256 72 64 chr11 94663510 94663525 -27180331 + ID_B1 SINE B4 82 203 -21 4 1307 216 86 0 0 chr11 94663525 94663560 -27180296 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1307 831 147 15 0 chr11 94663618 94663754 -27180102 + B1_Mus1 SINE Alu 2 139 -9 4 1307 198 103 0 0 chr11 94663769 94663798 -27180058 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 1307 626 186 152 13 chr11 94663914 94664072 -27179784 - B2_Mm1t SINE B2 -13 180 1 4 1307 434 205 139 41 chr11 94664073 94664180 -27179676 + B1_Mus2 SINE Alu 15 125 -24 4 1307 1169 62 0 7 chr11 94664180 94664327 -27179529 + B1_Mm SINE Alu 2 147 0 4 1307 416 205 139 41 chr11 94664327 94664341 -27179515 + B1_Mur3 SINE Alu 126 148 -1 4 1307 216 97 0 0 chr11 94664342 94664373 -27179483 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 4 1307 427 274 69 26 chr11 94664407 94664517 -27179339 + B3A SINE B2 1 115 -83 4 1307 1297 124 152 0 chr11 94664517 94664727 -27179129 + RMER2 LTR ERV1 1 242 -325 4 1307 312 133 0 0 chr11 94665471 94665531 -27178325 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1307 270 56 0 0 chr11 94665543 94665579 -27178277 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1307 309 314 48 10 chr11 94665579 94665682 -27178174 + ID_B1 SINE B4 70 176 -48 4 1307 377 304 0 0 chr11 94665591 94665683 -27178173 + PB1D10 SINE Alu 5 96 -21 4 1307 957 207 39 0 chr11 94666011 94666214 -27177642 + B3 SINE B2 3 213 -3 4 1307 344 342 94 0 chr11 94666494 94666611 -27177245 + B4A SINE B4 93 220 -72 4 1307 240 111 0 0 chr11 94666615 94666651 -27177205 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 4 1307 501 273 61 12 chr11 94666755 94666918 -27176938 - MTE2a LTR MaLR -21 358 188 4 1307 1092 217 81 29 chr11 94666921 94667230 -27176626 - MT2A LTR ERVL -132 401 77 4 1307 310 314 91 7 chr11 94667164 94667318 -27176538 - MTE2a LTR MaLR -243 176 10 4 1307 894 276 148 26 chr11 94667569 94667977 -27175879 - MT2B LTR ERVL 0 601 1 4 1307 387 198 109 10 chr11 94668051 94668201 -27175655 - B3A SINE B2 -14 181 3 4 1307 1160 143 0 6 chr11 94668278 94668454 -27175402 - B2_Mm2 SINE B2 -20 175 1 5 1307 314 253 143 0 chr11 94668487 94668578 -27175278 - RMER15 LTR ERVL -14 561 458 5 1307 1345 28 0 33 chr11 94669014 94669198 -27174658 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 5 1307 1231 112 11 11 chr11 94669255 94669445 -27174411 + B2_Mm1t SINE B2 2 191 -2 5 1307 240 35 0 0 chr11 94670336 94670365 -27173491 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1307 942 105 15 0 chr11 94670367 94670500 -27173356 - B1_Mus1 SINE Alu -12 136 2 5 1307 248 250 94 0 chr11 94670613 94670677 -27173179 + ID4_ SINE ID 3 72 -11 5 1307 369 0 0 0 chr11 94670750 94670791 -27173065 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1307 302 177 0 39 chr11 94670797 94670864 -27172992 - B2_Mm2 SINE B2 -107 109 47 5 1307 1007 145 13 0 chr11 94670929 94671088 -27172768 - B2_Mm1t SINE B2 -32 161 1 5 1307 248 273 51 13 chr11 94671154 94671232 -27172624 - ID2 SINE ID -1 82 2 5 1307 817 251 39 5 chr11 94671358 94671566 -27172290 + B3 SINE B2 2 216 0 5 1307 812 146 85 0 chr11 94671572 94671702 -27172154 + B1_Mus1 SINE Alu 1 141 -7 5 1307 621 0 0 0 chr11 94671734 94671803 -27172053 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 5 1307 321 246 31 0 chr11 94671871 94671936 -27171920 - ID4 SINE ID -13 70 4 5 1307 258 264 68 27 chr11 94671957 94672031 -27171825 - B1F SINE Alu -49 100 24 5 1307 583 189 125 6 chr11 94672522 94672672 -27171184 + B3 SINE B2 1 166 -27 5 1307 319 122 20 0 chr11 94672883 94672932 -27170924 + B1_Mus2 SINE Alu 61 110 -37 5 1307 264 284 259 0 chr11 94675254 94675416 -27168440 + ID_B1 SINE B4 17 220 -4 5 1307 1166 82 0 0 chr11 94675461 94675607 -27168249 + B1_Mus2 SINE Alu 2 147 0 5 1307 245 224 136 17 chr11 94675669 94675728 -27168128 - PB1D9 SINE Alu -77 72 7 5 1307 307 281 33 50 chr11 94675740 94675860 -27167996 - PB1D9 SINE Alu 0 120 3 5 1307 223 259 0 0 chr11 94676465 94676523 -27167333 + CT-rich Low_complexity Low_complexity 1 58 0 5 1307 529 188 24 63 chr11 94676540 94676688 -27167168 - B1_Mus1 SINE Alu -2 147 8 5 1307 186 43 0 0 chr11 94677231 94677254 -27166602 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1307 291 283 52 17 chr11 94677262 94677377 -27166479 + PB1D9 SINE Alu 2 120 0 5 1307 392 139 127 0 chr11 94677738 94677817 -27166039 + B1_Mus2 SINE Alu 59 147 0 5 1307 216 0 0 0 chr11 94677989 94678013 -27165843 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1307 1090 104 0 0 chr11 94678013 94678157 -27165699 - B1_Mus2 SINE Alu 0 147 4 5 1307 487 186 103 18 chr11 94679004 94679129 -27164727 + B1_Mur1 SINE Alu 1 129 -20 5 1307 194 0 39 0 chr11 94679131 94679157 -27164699 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1307 848 147 15 0 chr11 94679215 94679351 -27164505 + B1_Mus1 SINE Alu 2 139 -9 5 1307 342 115 0 0 chr11 94679363 94679415 -27164441 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 5 1307 690 178 145 13 chr11 94679531 94679690 -27164166 - B2_Mm1t SINE B2 -13 180 1 5 1307 456 220 118 71 chr11 94679691 94679798 -27164058 + B1_Mur3 SINE Alu 15 125 -24 5 1307 1128 55 7 7 chr11 94679798 94679944 -27163912 + B1_Mm SINE Alu 2 147 0 5 1307 383 220 118 71 chr11 94679944 94679963 -27163893 + B1_Mus2 SINE Alu 121 147 0 5 1307 438 257 69 26 chr11 94680001 94680111 -27163745 + B3A SINE B2 1 115 -83 5 1307 1317 119 152 0 chr11 94680111 94680321 -27163535 + RMER2 LTR ERV1 1 242 -325 5 1307 327 121 0 0 chr11 94681065 94681123 -27162733 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1307 270 56 0 0 chr11 94681135 94681171 -27162685 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1307 309 314 48 10 chr11 94681171 94681274 -27162582 + ID_B1 SINE B4 70 176 -48 5 1307 377 304 0 0 chr11 94681183 94681275 -27162581 + PB1D10 SINE Alu 5 96 -21 5 1307 916 217 39 0 chr11 94681603 94681806 -27162050 + B3 SINE B2 3 213 -3 5 1307 439 309 106 39 chr11 94682001 94682207 -27161649 + B4A SINE B4 2 223 -69 5 1307 252 86 0 0 chr11 94682207 94682242 -27161614 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 5 1307 439 309 106 39 chr11 94682242 94682291 -27161565 + B4A SINE B4 224 274 -18 5 1307 490 262 68 18 chr11 94682349 94682512 -27161344 - MTE2a LTR MaLR -21 358 188 5 1307 1086 217 81 29 chr11 94682515 94682824 -27161032 - MT2A LTR ERVL -132 401 77 5 1307 341 321 86 6 chr11 94682758 94682921 -27160935 - MTE2a LTR MaLR -243 176 1 5 1307 878 272 146 28 chr11 94683171 94683572 -27160284 - MT2B LTR ERVL -8 593 1 5 1307 387 198 109 10 chr11 94683646 94683796 -27160060 - B3A SINE B2 -14 181 3 5 1307 1125 174 5 5 chr11 94683858 94684049 -27159807 - B2_Mm2 SINE B2 -4 191 1 5 1307 1571 236 162 53 chr11 94684082 94684588 -27159268 - RMER15 LTR ERVL -14 561 1 5 1307 947 109 0 7 chr11 94685221 94685369 -27158487 + (GGA)n Simple_repeat Simple_repeat 1 147 0 5 1307 1180 113 11 11 chr11 94685421 94685600 -27158256 + B2_Mm1t SINE B2 2 180 -13 5 1307 243 0 0 0 chr11 94685600 94685627 -27158229 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1307 341 244 51 0 chr11 94686742 94686820 -27157036 - ID4_ SINE ID 0 83 2 5 1307 678 272 43 10 chr11 94686945 94687153 -27156703 + B3 SINE B2 2 216 0 5 1307 756 190 7 47 chr11 94687159 94687308 -27156548 + B1_Mus1 SINE Alu 1 143 -5 5 1307 374 242 0 0 chr11 94687394 94687460 -27156396 - ID4_ SINE ID -14 69 4 5 1307 242 243 202 14 chr11 94687467 94687570 -27156286 - PB1 SINE Alu -34 115 1 5 1307 804 171 40 14 chr11 94688060 94688221 -27155635 + B3 SINE B2 1 166 -27 5 1307 283 163 20 0 chr11 94688429 94688478 -27155378 + B1_Mus2 SINE Alu 61 110 -37 5 1307 252 288 251 0 chr11 94690835 94690998 -27152858 + ID_B1 SINE B4 17 220 -4 5 1307 258 32 0 0 chr11 94691080 94691111 -27152745 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1307 1033 67 0 0 chr11 94691833 94691967 -27151889 - B1_Mus2 SINE Alu 0 147 14 5 1307 400 105 112 50 chr11 94692272 94692352 -27151504 + B1_Mus2 SINE Alu 62 146 -1 5 1307 417 207 198 0 chr11 94693359 94693480 -27150376 + B1_Mur1 SINE Alu 5 149 0 5 1307 210 143 0 0 chr11 94693482 94693517 -27150339 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1307 814 170 56 7 chr11 94693518 94693660 -27150196 + B1_Mur4 SINE Alu 2 150 0 5 1307 1240 61 0 0 chr11 94694976 94695123 -27148733 - B1_Mm SINE Alu 0 147 1 5 1307 2110 146 12 0 chr11 94695522 94695844 -27148012 + ORR1A2 LTR MaLR 1 326 -1 5 1307 9826 155 63 34 chr11 94695845 94696063 -27147793 + ORR1A2-int LTR MaLR 1 200 -1763 5 1307 1286 81 37 11 chr11 94696063 94696250 -27147606 - B2_Mm2 SINE B2 0 195 4 5 1307 9826 155 63 34 chr11 94696250 94697939 -27145917 + ORR1A2-int LTR MaLR 201 1963 0 5 1307 1440 134 253 0 chr11 94697939 94698200 -27145656 + ORR1A2 LTR MaLR 1 327 0 5 1307 703 176 34 0 chr11 94698279 94698398 -27145458 - B1_Mus2 SINE Alu -19 128 6 5 1307 775 176 8 0 chr11 94698811 94698936 -27144920 - B1_Mus1 SINE Alu -21 127 2 5 1307 3409 117 66 24 chr11 94699810 94700354 -27143502 + RMER2 LTR ERV1 1 567 0 5 1307 469 135 0 22 chr11 94700765 94700856 -27143000 + CT-rich Low_complexity Low_complexity 1 89 0 5 1307 468 0 0 0 chr11 94700867 94700919 -27142937 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1307 1059 193 29 0 chr11 94701213 94701420 -27142436 + B3 SINE B2 1 213 -3 5 1307 515 288 94 114 chr11 94701607 94701905 -27141951 + B4A SINE B4 1 292 0 5 1307 486 281 62 12 chr11 94701934 94702096 -27141760 - MTE2a LTR MaLR -22 357 188 5 1307 931 262 43 87 chr11 94702106 94702474 -27141382 - MT2A LTR ERVL -163 370 19 5 1307 282 138 52 21 chr11 94702515 94702611 -27141245 + (CATA)n Simple_repeat Simple_repeat 4 102 0 5 1307 683 233 13 52 chr11 94702812 94702966 -27140890 - B1_Mur1 SINE Alu -1 148 1 5 1307 221 200 0 0 chr11 94703027 94703072 -27140784 + B1_Mur3 SINE Alu 85 129 -20 5 1307 905 243 19 5 chr11 94703495 94703710 -27140146 - MT2A LTR ERVL 0 533 316 5 1307 460 264 76 76 chr11 94703754 94703885 -27139971 - MT2A LTR ERVL -459 142 12 5 1307 383 265 0 59 chr11 94703956 94704096 -27139760 - B3A SINE B2 -1 215 5 5 1307 330 171 0 0 chr11 94704153 94704223 -27139633 + CT-rich Low_complexity Low_complexity 1 70 0 5 1307 982 166 57 6 chr11 94704223 94704399 -27139457 - B2_Mm2 SINE B2 -10 185 1 5 1307 319 258 30 0 chr11 94704551 94704617 -27139239 - ID4_ SINE ID -13 70 3 5 1307 252 241 86 0 chr11 94704637 94704695 -27139161 - B1F SINE Alu -49 100 38 5 1307 184 299 33 44 chr11 94705013 94705104 -27138752 + L2c LINE L2 3293 3382 -5 5 1307 746 163 38 7 chr11 94705190 94705355 -27138501 + B3 SINE B2 1 172 -23 5 1307 291 222 19 0 chr11 94705567 94705621 -27138235 + B1_Mus2 SINE Alu 61 115 -32 5 1307 192 97 0 0 chr11 94706341 94706372 -27137484 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1307 183 224 0 93 chr11 94706567 94706621 -27137235 + L3 LINE CR1 3751 3799 -690 5 1307 193 136 21 64 chr11 94708063 94708110 -27135746 + L3 LINE CR1 2779 2823 -1666 5 1307 389 264 26 43 chr11 94708323 94708438 -27135418 - PB1D9 SINE Alu -5 115 3 5 1307 552 91 0 0 chr11 94708438 94708526 -27135330 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1307 680 141 8 0 chr11 94709122 94709243 -27134613 + (TC)n Simple_repeat Simple_repeat 1 122 0 5 1307 479 250 121 0 chr11 94709283 94709415 -27134441 - B1_Mur4 SINE Alu -2 148 1 5 1307 307 324 44 53 chr11 94709446 94709560 -27134296 + B1_Mur2 SINE Alu 2 114 -6 5 1307 410 127 127 0 chr11 94709891 94709970 -27133886 + B1_Mus2 SINE Alu 59 147 0 6 1307 448 248 110 0 chr11 94710946 94711055 -27132801 + B1_Mur1 SINE Alu 1 121 -28 6 1307 1244 54 0 0 chr11 94711065 94711212 -27132644 + B1_Mus2 SINE Alu 1 147 0 6 1307 214 194 0 75 chr11 94711212 94711271 -27132585 + A-rich Low_complexity Low_complexity 8 61 0 6 1307 745 179 64 7 chr11 94711272 94711413 -27132443 + B1_Mur4 SINE Alu 2 150 0 6 1307 970 88 66 0 chr11 94711417 94711553 -27132303 + B1_Mm SINE Alu 2 146 -1 6 1307 278 26 0 25 chr11 94711555 94711595 -27132261 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 6 1307 1096 123 0 0 chr11 94713269 94713423 -27130433 + B2_Mm2 SINE B2 5 158 -37 6 1307 351 0 0 0 chr11 94713424 94713463 -27130393 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1307 362 88 0 0 chr11 94713517 94713574 -27130282 + B2_Mm1a SINE B2 127 183 -10 6 1307 2076 120 32 0 chr11 94713617 94713926 -27129930 + ORR1A2 LTR MaLR 1 319 -8 6 1307 1202 115 60 0 chr11 94713939 94714122 -27129734 - B2_Mm2 SINE B2 -1 194 1 6 1307 706 217 29 0 chr11 94714153 94714291 -27129565 - B1_Mus2 SINE Alu 0 147 6 6 1307 581 246 8 0 chr11 94714694 94714816 -27129040 - B1_Mus1 SINE Alu -21 127 5 6 1307 220 71 0 0 chr11 94715437 94715465 -27128391 + B1_Mur3 SINE Alu 94 121 -28 6 1307 369 0 0 0 chr11 94715468 94715509 -27128347 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1307 1254 54 0 0 chr11 94715774 94715921 -27127935 + B1_Mus2 SINE Alu 1 147 0 6 1307 877 248 346 0 chr11 94716083 94716479 -27127377 - MT2A LTR ERVL 0 533 1 6 1307 228 35 0 0 chr11 94716521 94716550 -27127306 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1307 336 217 112 14 chr11 94716565 94716718 -27127138 - B3A SINE B2 -14 181 3 6 1307 209 328 0 29 chr11 94716764 94716811 -27127045 + polypyrimidine Low_complexity Low_complexity 22 68 0 6 1307 1213 128 0 6 chr11 94716811 94716992 -27126864 - B2_Mm2 SINE B2 -15 180 1 6 1307 209 328 0 29 chr11 94716992 94717013 -27126843 + polypyrimidine Low_complexity Low_complexity 2 21 0 6 1307 1522 237 159 46 chr11 94717066 94717583 -27126273 - RMER15 LTR ERVL 0 575 1 6 1307 180 204 91 0 chr11 94718631 94718675 -27125181 - L3 LINE CR1 -3561 928 881 6 1307 228 261 92 0 chr11 94719191 94719256 -27124600 + ID4_ SINE ID 3 73 -10 6 1307 252 289 53 0 chr11 94719354 94719430 -27124426 - ID4_ SINE ID -1 82 3 6 1307 678 282 43 5 chr11 94719558 94719765 -27124091 + B3 SINE B2 2 216 0 6 1307 775 175 7 35 chr11 94719771 94719913 -27123943 + B1_Mus1 SINE Alu 1 138 -10 6 1307 195 69 0 0 chr11 94719919 94719948 -27123908 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 1307 320 239 45 0 chr11 94720014 94720081 -27123775 - ID4_ SINE ID -11 72 3 6 1307 1416 56 34 0 chr11 94720140 94720319 -27123537 + B2_Mm1a SINE B2 2 186 -7 6 1307 222 200 143 18 chr11 94720358 94720414 -27123442 - PB1 SINE Alu -64 63 1 6 1307 633 170 125 8 chr11 94720904 94721054 -27122802 + B3 SINE B2 1 166 -27 6 1307 256 204 20 0 chr11 94721266 94721315 -27122541 + B1_Mm SINE Alu 61 110 -37 6 1307 257 86 0 25 chr11 94723890 94723941 -27119915 - B1_Mus1 SINE Alu -91 57 7 6 1307 413 240 19 29 chr11 94723973 94724076 -27119780 - PB1D9 SINE Alu -16 104 3 6 1307 378 0 0 0 chr11 94724077 94724119 -27119737 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1307 369 0 0 0 chr11 94724119 94724159 -27119697 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1307 207 0 0 0 chr11 94724636 94724659 -27119197 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1307 189 0 0 0 chr11 94724659 94724680 -27119176 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1307 222 222 16 0 chr11 94724794 94724857 -27118999 + CT-rich Low_complexity Low_complexity 2 65 0 6 1307 780 154 15 30 chr11 94724900 94725034 -27118822 - B1_Mus2 SINE Alu -6 141 10 6 1307 243 263 89 38 chr11 94725073 94725152 -27118704 + PB1D9 SINE Alu 22 104 -16 6 1307 252 86 0 0 chr11 94725155 94725190 -27118666 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1307 429 77 110 49 chr11 94725531 94725613 -27118243 + B1_Mur3 SINE Alu 62 148 -1 6 1307 445 208 192 0 chr11 94726612 94726737 -27117119 + B1_Mur1 SINE Alu 1 149 0 6 1307 650 197 62 23 chr11 94726739 94726869 -27116987 + B1_Mur4 SINE Alu 1 135 -15 6 1307 644 251 62 43 chr11 94726891 94727099 -27116757 + B3 SINE B2 5 216 0 6 1307 257 218 18 18 chr11 94727127 94727183 -27116673 + RSINE1 SINE B4 4 59 -106 6 1307 607 260 0 20 chr11 94727199 94727348 -27116508 - B1_Mur2 SINE Alu -1 148 3 6 1307 225 0 0 0 chr11 94727438 94727463 -27116393 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1307 466 87 0 115 chr11 94727517 94727595 -27116261 - B1_Mus2 SINE Alu -7 140 72 6 1307 2068 128 45 0 chr11 94729197 94729510 -27114346 + ORR1A2 LTR MaLR 1 327 0 6 1307 2342 118 17 14 chr11 94729510 94729954 -27113902 + ORR1A2 LTR MaLR 1 386 -8 6 1307 911 124 29 0 chr11 94729998 94730135 -27113721 - B1_Mus2 SINE Alu 0 147 7 6 1307 598 165 61 0 chr11 94730562 94730677 -27113179 - B1_Mus1 SINE Alu -21 127 6 6 1307 183 256 103 0 chr11 94730967 94731045 -27112811 - MIR3 SINE MIR -11 197 112 6 1307 314 215 0 12 chr11 94731995 94732075 -27111781 + CT-rich Low_complexity Low_complexity 3 81 0 6 1307 660 244 22 0 chr11 94732077 94732212 -27111644 - B1_Mur2 SINE Alu -6 143 6 6 1307 288 0 0 0 chr11 94733492 94733524 -27110332 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1307 992 85 43 0 chr11 94733524 94733665 -27110191 - B1_Mm SINE Alu 0 147 1 6 1307 180 0 0 0 chr11 94734049 94734069 -27109787 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1307 29 0 0 0 chr11 94734186 94734215 -27109641 + AT_rich Low_complexity Low_complexity 1 29 0 6 1307 22 0 0 0 chr11 94734928 94734950 -27108906 + GC_rich Low_complexity Low_complexity 1 22 0 6 1307 234 62 0 0 chr11 94735422 94735454 -27108402 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 6 1307 192 220 82 33 chr11 94737017 94737078 -27106778 - MIRc SINE MIR -119 149 86 6 1307 426 39 0 0 chr11 94737954 94738006 -27105850 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1307 217 344 124 28 chr11 94740070 94740288 -27103568 + L2 LINE L2 2543 2781 -638 6 1307 741 212 96 20 chr11 94740905 94741081 -27102775 + B3 SINE B2 1 186 -30 6 1307 188 0 0 69 chr11 94741081 94741110 -27102746 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1307 741 212 96 20 chr11 94741110 94741130 -27102726 + B3 SINE B2 187 212 -4 6 1307 768 209 164 9 chr11 94741268 94741466 -27102390 - B3 SINE B2 -7 209 2 6 1307 513 27 40 0 chr11 94741496 94741571 -27102285 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1307 435 194 19 67 chr11 94741571 94741676 -27102180 - RSINE1 SINE B4 -63 102 3 6 1307 246 32 0 0 chr11 94741688 94741719 -27102137 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 6 1307 886 175 0 14 chr11 94741719 94741864 -27101992 - B1_Mur2 SINE Alu -6 143 1 6 1307 359 182 0 57 chr11 94741864 94741934 -27101922 - 4.5SRNA scRNA scRNA -3 91 26 6 1307 236 288 0 99 chr11 94741867 94741948 -27101908 - B1F1 SINE Alu -56 93 21 6 1307 429 233 359 24 chr11 94741959 94742126 -27101730 - ID_B1 SINE B4 0 224 2 6 1307 220 136 0 43 chr11 94742590 94742636 -27101220 + (CGG)n Simple_repeat Simple_repeat 3 46 0 6 1307 253 273 20 15 chr11 94743042 94743150 -27100706 + MIR SINE MIR 45 156 -112 6 1307 219 288 50 107 chr11 94743714 94743854 -27100002 + MIRb SINE MIR 53 184 -84 6 1307 21 0 0 0 chr11 94743930 94743951 -27099905 + GC_rich Low_complexity Low_complexity 1 21 0 6 1307 612 0 0 0 chr11 94745174 94745242 -27098614 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1307 353 289 0 58 chr11 94745403 94745524 -27098332 + polypyrimidine Low_complexity Low_complexity 1 114 0 6 1307 489 245 141 25 chr11 94746265 94746428 -27097428 + B3A SINE B2 1 182 -16 6 1307 1336 68 45 0 chr11 94746456 94746633 -27097223 + B2_Mm2 SINE B2 3 187 -8 6 1307 480 259 25 149 chr11 94746653 94746975 -27096881 + L1MC4 LINE L1 6637 6918 -1124 6 1307 286 343 22 7 chr11 94747032 94747170 -27096686 + L1M4 LINE L1 5685 5824 -350 6 1307 1235 55 0 0 chr11 94747175 94747321 -27096535 + B1_Mus1 SINE Alu 1 146 -2 6 1307 264 200 46 0 chr11 94747377 94747442 -27096414 + L1M4 LINE L1 5769 5836 -338 6 1307 293 248 57 10 chr11 94747443 94747572 -27096284 + L1MB8 LINE L1 5782 5922 -252 6 1307 534 103 0 0 chr11 94747596 94747674 -27096182 + (TCC)n Simple_repeat Simple_repeat 1 78 0 6 1307 715 211 0 26 chr11 94747674 94747825 -27096031 - B1_Mus1 SINE Alu -1 147 1 6 1307 343 274 49 0 chr11 94747913 94748015 -27095841 + L1MB8 LINE L1 6065 6171 -7 6 1307 434 219 110 158 chr11 94748036 94748182 -27095674 - B1F SINE Alu -7 142 4 6 1307 402 273 6 91 chr11 94748228 94748393 -27095463 + B4A SINE B4 2 152 -140 6 1307 672 307 30 63 chr11 94748447 94748718 -27095138 + B4A SINE B4 28 289 -3 6 1307 6202 85 6 22 chr11 94748763 94749620 -27094236 + Lx3B LINE L1 6130 6972 -1 6 1307 180 0 0 0 chr11 94749623 94749643 -27094213 + (GAA)n Simple_repeat Simple_repeat 2 21 0 6 1307 285 98 0 0 chr11 94749706 94749747 -27094109 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1307 1211 62 0 0 chr11 94749828 94749972 -27093884 - B1_Mm SINE Alu -2 145 2 6 1307 303 231 92 0 chr11 94749988 94750053 -27093803 + L1MCa LINE L1 794 864 -5644 7 1307 219 203 0 0 chr11 94750110 94750179 -27093677 + A-rich Low_complexity Low_complexity 1 69 0 7 1307 396 218 13 0 chr11 94750267 94750345 -27093511 + ID4 SINE ID 3 81 -2 7 1307 311 338 117 7 chr11 94750448 94750585 -27093271 - RSINE1 SINE B4 -6 159 8 7 1307 633 186 26 17 chr11 94750589 94750704 -27093152 - PB1D10 SINE Alu -1 116 1 7 1307 1214 203 108 108 chr11 94750705 94750986 -27092870 - ORR1D1 LTR MaLR -2 372 101 7 1307 1195 49 7 0 chr11 94750986 94751130 -27092726 - B1_Mus2 SINE Alu -1 146 2 7 1307 1214 203 108 108 chr11 94751130 94751218 -27092638 - ORR1D1 LTR MaLR -274 100 3 7 1307 330 286 26 0 chr11 94751225 94751302 -27092554 + PB1D10 SINE Alu 26 104 -13 7 1307 1030 116 0 17 chr11 94751305 94751481 -27092375 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 7 1307 724 154 35 56 chr11 94751530 94751674 -27092182 + B1_Mur4 SINE Alu 1 141 -9 7 1307 660 87 0 0 chr11 94751674 94751766 -27092090 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 7 1307 580 246 33 0 chr11 94751836 94751958 -27091898 + B1F SINE Alu 7 132 -17 7 1307 606 241 83 0 chr11 94751989 94752134 -27091722 + RSINE1 SINE B4 5 161 -4 7 1307 229 287 35 118 chr11 94752189 94752224 -27091632 + ID_B1 SINE B4 69 99 -125 7 1307 357 43 0 0 chr11 94752224 94752271 -27091585 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 7 1307 229 287 35 118 chr11 94752271 94752405 -27091451 + ID_B1 SINE B4 100 224 0 7 1307 571 178 8 71 chr11 94752279 94752406 -27091450 + B1_Mur3 SINE Alu 31 149 0 7 1307 1158 251 49 43 chr11 94752406 94752872 -27090984 + L1MCa LINE L1 1038 1506 -5002 7 1307 272 242 0 0 chr11 94752908 94752970 -27090886 + B1_Mur3 SINE Alu 1 62 -87 7 1307 602 153 135 16 chr11 94753045 94753171 -27090685 + B1_Mur3 SINE Alu 9 149 0 7 1307 1123 103 0 0 chr11 94753271 94753416 -27090440 + B1_Mus1 SINE Alu 3 147 -1 7 1307 574 233 18 0 chr11 94753418 94753581 -27090275 + GA-rich Low_complexity Low_complexity 3 168 0 7 1307 326 128 67 44 chr11 94753631 94753721 -27090135 + L1MCa LINE L1 1711 1802 -4706 7 1307 656 299 13 111 chr11 94753759 94754075 -27089781 + B4A SINE B4 8 292 0 7 1307 307 244 22 0 chr11 94754112 94754202 -27089654 + L1MC2 LINE L1 1795 1886 -4622 7 1307 749 295 24 10 chr11 94754210 94754419 -27089437 + B3 SINE B2 1 212 -4 7 1307 968 149 7 0 chr11 94754437 94754585 -27089271 + B1_Mur3 SINE Alu 1 149 0 7 1307 1361 99 16 10 chr11 94754588 94754782 -27089074 + B2_Mm2 SINE B2 1 195 0 7 1307 500 218 190 51 chr11 94754830 94755067 -27088789 + L1MC2 LINE L1 2368 2637 -3684 7 1307 813 258 21 26 chr11 94755083 94755274 -27088582 + ID_B1 SINE B4 1 190 -34 7 1307 311 65 22 0 chr11 94755297 94755343 -27088513 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 7 1307 708 243 99 11 chr11 94755343 94755534 -27088322 + MTEb LTR MaLR 170 377 -2 7 1307 248 324 35 43 chr11 94755534 94755622 -27088234 + B1F SINE Alu 56 142 -7 7 1307 365 333 12 12 chr11 94756215 94756379 -27087477 + L1MC2 LINE L1 3926 4089 -2232 7 1307 807 182 27 20 chr11 94756380 94756526 -27087330 + B1_Mur2 SINE Alu 2 148 -1 7 1307 328 292 55 98 chr11 94756390 94756553 -27087303 + B4A SINE B4 96 251 -41 7 1307 821 169 7 45 chr11 94756651 94756709 -27087147 - B1_Mur4 SINE Alu -1 149 94 7 1307 3127 67 10 19 chr11 94756709 94757120 -27086736 - MTB_Mm LTR MaLR 0 407 1 7 1307 821 169 7 45 chr11 94757120 94757216 -27086640 - B1_Mur4 SINE Alu -57 93 1 7 1307 775 233 18 6 chr11 94757216 94757371 -27086485 - ID_B1 SINE B4 -66 158 2 7 1307 362 276 51 8 chr11 94757383 94757500 -27086356 + L1MC2 LINE L1 4744 4865 -1456 7 1307 660 286 44 39 chr11 94757507 94757711 -27086145 + B4A SINE B4 74 278 -14 7 1307 2532 233 57 10 chr11 94757882 94758560 -27085296 + L1MC2 LINE L1 5466 6174 -345 7 1307 392 0 21 0 chr11 94758605 94758653 -27085203 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1307 748 218 79 11 chr11 94758758 94758948 -27084908 - B3 SINE B2 -13 203 1 7 1307 708 206 46 0 chr11 94758957 94759088 -27084768 - B4 SINE B4 -75 217 81 7 1307 207 0 0 0 chr11 94759104 94759127 -27084729 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1307 302 228 56 88 chr11 94759260 94759385 -27084471 - ORR1A3 LTR MaLR -156 170 50 7 1307 1078 63 49 25 chr11 94759385 94759548 -27084308 - B2_Mm1t SINE B2 -11 182 16 7 1307 428 248 18 9 chr11 94759569 94759679 -27084177 + L1MC2 LINE L1 6396 6506 -2 7 1307 228 35 0 0 chr11 94759941 94759970 -27083886 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1307 504 0 0 0 chr11 94759970 94760025 -27083831 + (GA)n Simple_repeat Simple_repeat 2 57 0 7 1307 204 40 0 0 chr11 94760105 94760130 -27083726 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1307 484 326 7 0 chr11 94760278 94760416 -27083440 - ID_B1 SINE B4 -7 217 79 7 1307 1979 107 26 166 chr11 94760502 94760558 -27083298 + ORR1A2 LTR MaLR 1 55 -272 7 1307 1216 86 40 17 chr11 94760558 94760735 -27083121 + B2_Mm1t SINE B2 2 182 -11 7 1307 1979 107 26 166 chr11 94760735 94760792 -27083064 + ORR1A2 LTR MaLR 56 106 -221 7 1307 1024 72 72 0 chr11 94760792 94760930 -27082926 + B1_Mus1 SINE Alu 1 148 0 7 1307 1979 107 26 166 chr11 94760930 94761195 -27082661 + ORR1A2 LTR MaLR 107 327 0 7 1307 1255 28 0 0 chr11 94761203 94761347 -27082509 + B1_Mm SINE Alu 1 144 -3 7 1307 207 0 0 0 chr11 94761347 94761370 -27082486 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1307 405 292 33 59 chr11 94761377 94761530 -27082326 + RSINE1 SINE B4 8 156 -9 7 1307 875 222 54 5 chr11 94761599 94761803 -27082053 + B3 SINE B2 3 216 0 7 1307 809 175 0 0 chr11 94761933 94762059 -27081797 + B1_Mur4 SINE Alu 12 137 -13 7 1307 979 123 7 0 chr11 94762090 94762228 -27081628 - B1_Mus2 SINE Alu 0 147 9 7 1307 267 152 0 0 chr11 94762236 94762282 -27081574 + T-rich Low_complexity Low_complexity 1 46 0 7 1307 1895 165 43 76 chr11 94762366 94762812 -27081044 + RMER6C LTR ERVK 1 431 -259 7 1307 285 236 110 110 chr11 94762861 94762961 -27080895 + PB1D7 SINE Alu 15 114 -6 7 1307 317 319 130 68 chr11 94762977 94763169 -27080687 + L1M5 LINE L1 2117 2320 -3826 7 1307 309 336 26 34 chr11 94763216 94763238 -27080618 - PB1D10 SINE Alu 0 117 5 7 1307 318 333 11 22 chr11 94763238 94763330 -27080526 - ID_B1 SINE B4 -48 176 86 7 1307 2797 245 55 42 chr11 94763605 94764401 -27079455 - RLTR40 LTR ERVK -10 807 1 7 1307 348 335 164 32 chr11 94764401 94764682 -27079174 + L1M5 LINE L1 2562 2879 -3267 7 1307 1621 50 0 0 chr11 94764682 94764917 -27078939 - L1Md_T LINE L1 0 6582 6382 7 1307 265 64 20 41 chr11 94764917 94764930 -27078926 + (TTTC)n Simple_repeat Simple_repeat 1 13 0 7 1307 561 236 9 9 chr11 94764930 94765041 -27078815 - B1_Mur1 SINE Alu -21 128 18 7 1308 368 348 43 47 chr11 94765056 94765288 -27078568 + L1MC LINE L1 2865 3095 -3051 7 1308 449 223 53 0 chr11 94765349 94765443 -27078413 - B1_Mm SINE Alu -46 101 3 7 1308 188 122 0 24 chr11 94765480 94765499 -27078357 + (CAAA)n Simple_repeat Simple_repeat 2 20 0 7 1308 1106 78 21 0 chr11 94765499 94765640 -27078216 + B1_Mus2 SINE Alu 3 146 -1 7 1308 188 122 0 24 chr11 94765640 94765662 -27078194 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 7 1308 915 324 103 21 chr11 94765725 94766299 -27077557 + L1M5 LINE L1 3494 4114 -2032 7 1308 330 252 78 65 chr11 94766379 94766494 -27077362 + L1M5 LINE L1 4251 4366 -1780 7 1308 1019 214 23 19 chr11 94766494 94766708 -27077148 + B3 SINE B2 1 215 -1 7 1308 330 252 78 65 chr11 94766708 94766726 -27077130 + L1M5 LINE L1 4367 4387 -1759 7 1308 835 166 14 20 chr11 94766726 94766874 -27076982 + B1_Mus1 SINE Alu 1 147 -1 7 1308 330 252 78 65 chr11 94766874 94766892 -27076964 + L1M5 LINE L1 4388 4405 -1741 7 1308 280 59 39 0 chr11 94766930 94766981 -27076875 + (TTG)n Simple_repeat Simple_repeat 2 54 0 7 1308 346 197 0 15 chr11 94767000 94767067 -27076789 + PB1D9 SINE Alu 4 69 -51 7 1308 477 229 16 25 chr11 94767181 94767302 -27076554 - PB1D9 SINE Alu 0 120 1 7 1308 595 174 60 60 chr11 94767414 94767579 -27076277 - B1_Mus2 SINE Alu 0 149 2 7 1308 762 185 0 49 chr11 94767616 94767758 -27076098 - B1_Mur4 SINE Alu -15 135 1 7 1308 834 247 46 35 chr11 94767764 94767910 -27075946 - B3 SINE B2 -17 199 52 7 1308 2334 90 18 59 chr11 94767910 94768251 -27075605 - ORR1A2 LTR MaLR 0 327 1 7 1308 834 247 46 35 chr11 94768251 94768301 -27075555 - B3 SINE B2 -165 51 1 7 1308 513 221 181 27 chr11 94768376 94768577 -27075279 + L1MB8 LINE L1 5653 5874 -304 7 1308 249 254 51 0 chr11 94768584 94768643 -27075213 - RMER30 DNA MER1_type -6 196 135 7 1308 865 153 8 0 chr11 94768655 94768786 -27075070 + B1_Mur3 SINE Alu 5 136 -13 7 1308 677 122 9 0 chr11 94768786 94768901 -27074955 + (GGGA)n Simple_repeat Simple_repeat 1 116 0 7 1308 973 58 7 7 chr11 94768901 94769039 -27074817 + (GAGAA)n Simple_repeat Simple_repeat 2 139 0 7 1308 473 227 111 22 chr11 94769079 94769214 -27074642 - RSINE1 SINE B4 -14 151 5 7 1308 646 231 35 61 chr11 94769219 94769449 -27074407 + L1MB8 LINE L1 5914 6137 -41 7 1308 282 220 0 0 chr11 94769495 94769554 -27074302 + L1M5 LINE L1 4614 4672 -1474 7 1308 220 275 176 0 chr11 94769554 94769645 -27074211 + B4 SINE B4 81 187 -105 7 1308 430 217 42 0 chr11 94769567 94769671 -27074185 + PB1D10 SINE Alu 15 175 0 7 1308 275 272 24 12 chr11 94769672 94769754 -27074102 + ID4 SINE ID 1 83 0 7 1308 487 198 93 19 chr11 94769763 94769871 -27073985 - PB1D9 SINE Alu -2 118 3 7 1308 233 103 0 0 chr11 94769932 94769971 -27073885 + MTD LTR MaLR 172 210 -209 7 1308 1508 53 37 0 chr11 94769972 94770159 -27073697 + B2_Mm2 SINE B2 2 195 0 7 1308 589 170 47 9 chr11 94770191 94770298 -27073558 + B1_Mur2 SINE Alu 20 130 -19 7 1308 245 325 40 57 chr11 94770298 94770315 -27073541 + ID_B1 SINE B4 101 222 -2 7 1308 716 155 7 0 chr11 94770315 94770457 -27073399 + (TA)n Simple_repeat Simple_repeat 2 144 0 7 1308 233 277 0 0 chr11 94770578 94770643 -27073213 + HAL1 LINE L1 1559 1623 -884 7 1308 21 0 0 0 chr11 94770655 94770676 -27073180 + AT_rich Low_complexity Low_complexity 1 21 0 7 1308 295 313 116 48 chr11 94770716 94771155 -27072701 + HAL1 LINE L1 1735 2203 -304 7 1308 410 296 37 56 chr11 94771184 94771246 -27072610 + ID_B1 SINE B4 26 179 -41 7 1308 522 232 0 0 chr11 94771246 94771341 -27072515 + B1_Mur2 SINE Alu 7 101 -48 7 1308 427 291 102 0 chr11 94771372 94771499 -27072357 + RSINE1 SINE B4 6 145 -20 7 1308 369 0 0 0 chr11 94771594 94771635 -27072221 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 7 1308 189 0 0 0 chr11 94771972 94771993 -27071863 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7 1308 323 296 111 0 chr11 94771993 94772101 -27071755 + L1MC4 LINE L1 6807 6926 -1116 8 1308 629 278 113 23 chr11 94772107 94772371 -27071485 - MLT1B LTR MaLR -4 386 99 8 1308 1995 155 34 73 chr11 94772371 94772781 -27071075 + ORR1B1 LTR MaLR 1 394 0 8 1308 830 218 19 0 chr11 94772947 94773103 -27070753 + B3 SINE B2 1 159 -57 8 1308 425 154 0 0 chr11 94773285 94773350 -27070506 + (GCCTAA)n Simple_repeat Simple_repeat 4 68 0 8 1308 299 334 9 19 chr11 94773350 94773487 -27070369 + MLT1A LTR MaLR 212 340 -25 8 1308 601 118 192 48 chr11 94773490 94773615 -27070241 - B1_Mur4 SINE Alu -1 149 7 8 1308 180 152 0 0 chr11 94773620 94773653 -27070203 + (CCA)n Simple_repeat Simple_repeat 1 33 0 8 1308 210 167 73 18 chr11 94773693 94773748 -27070108 - L4 LINE RTE -485 1544 1487 8 1308 271 330 10 0 chr11 94773882 94773982 -27069874 + L1MC4 LINE L1 7437 7537 -505 8 1308 640 239 53 44 chr11 94773993 94774222 -27069634 + MTD LTR MaLR 18 257 -150 8 1308 567 352 92 61 chr11 94774725 94775151 -27068705 + MLT1K LTR MaLR 155 593 -2 8 1308 241 286 116 16 chr11 94775599 94775720 -27068136 - MIRc SINE MIR -114 154 22 8 1308 297 0 0 0 chr11 94775866 94775899 -27067957 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1308 362 74 19 0 chr11 94775899 94775952 -27067904 + (TA)n Simple_repeat Simple_repeat 2 56 0 8 1308 348 247 22 22 chr11 94775965 94776056 -27067800 - B4A SINE B4 -78 214 124 8 1308 281 121 0 88 chr11 94776112 94776203 -27067653 + (TTTG)n Simple_repeat Simple_repeat 1 83 0 8 1308 607 172 0 10 chr11 94776204 94776304 -27067552 - ID_B1 SINE B4 -9 215 117 8 1308 334 282 15 68 chr11 94776483 94776616 -27067240 - MIRm SINE MIR -91 185 60 8 1308 58 60 0 0 chr11 94776772 94776872 -27066984 + AT_rich Low_complexity Low_complexity 1 100 0 8 1308 307 320 0 0 chr11 94777377 94777474 -27066382 + G-rich Low_complexity Low_complexity 1 97 0 8 1308 301 326 8 34 chr11 94777600 94777749 -27066107 + MIRb SINE MIR 35 188 -80 8 1308 459 212 17 17 chr11 94778256 94778371 -27065485 - B1_Mur4 SINE Alu -26 124 10 8 1308 316 256 91 33 chr11 94778264 94778385 -27065471 - B4 SINE B4 -88 204 77 8 1308 982 284 164 45 chr11 94778395 94778926 -27064930 - Charlie25 DNA MER1_type -42 2482 1889 8 1308 259 169 48 63 chr11 94779026 94779089 -27064767 + ID SINE ID 8 69 -155 8 1308 565 221 26 0 chr11 94779576 94779689 -27064167 + B1F SINE Alu 6 121 -28 8 1308 761 288 94 63 chr11 94779715 94780142 -27063714 - MLT1J LTR MaLR -59 453 14 8 1308 278 271 101 45 chr11 94780487 94780576 -27063280 + B1F1 SINE Alu 4 97 -52 8 1308 529 61 12 12 chr11 94780576 94780659 -27063197 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1308 339 200 138 23 chr11 94780669 94780756 -27063100 - B1_Mur1 SINE Alu -1 148 50 8 1308 440 36 0 0 chr11 94780917 94780973 -27062883 - B1_Mus2 SINE Alu -9 138 83 8 1308 850 73 48 8 chr11 94781024 94781149 -27062707 + U1 snRNA snRNA 36 165 0 8 1308 1235 65 12 0 chr11 94781153 94781322 -27062534 + (GGGAGA)n Simple_repeat Simple_repeat 4 174 0 8 1308 439 241 143 0 chr11 94781322 94781434 -27062422 - B1_Mur1 SINE Alu -21 128 1 8 1308 205 109 17 52 chr11 94781444 94781502 -27062354 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 8 1308 246 245 0 0 chr11 94781511 94781564 -27062292 - B4 SINE B4 -111 181 129 8 1308 400 264 52 108 chr11 94781573 94781785 -27062071 - B4A SINE B4 -91 201 2 8 1308 840 166 21 0 chr11 94781826 94781971 -27061885 + B1_Mur4 SINE Alu 2 149 -1 8 1308 962 162 6 0 chr11 94781975 94782154 -27061702 + GA-rich Low_complexity Low_complexity 1 180 0 8 1308 728 335 107 60 chr11 94782206 94782456 -27061400 - Charlie25 DNA MER1_type -1499 1025 782 8 1308 531 0 0 0 chr11 94782456 94782515 -27061341 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 1308 728 335 107 60 chr11 94782515 94782786 -27061070 - Charlie25 DNA MER1_type -1743 781 506 8 1308 692 145 8 33 chr11 94782786 94782907 -27060949 - PB1D9 SINE Alu -1 119 2 8 1308 728 339 87 57 chr11 94782907 94783289 -27060567 - Charlie25 DNA MER1_type -2019 505 50 8 1308 263 299 55 18 chr11 94783528 94783637 -27060219 - ERVL-E-int LTR ERVL -2324 3343 3231 8 1308 247 230 156 39 chr11 94783725 94783802 -27060054 - PB1D10 SINE Alu -22 98 13 8 1308 23 0 0 0 chr11 94783817 94783840 -27060016 + AT_rich Low_complexity Low_complexity 1 23 0 8 1308 1838 114 21 72 chr11 94783840 94784162 -27059694 + ORR1A2 LTR MaLR 1 305 -22 8 1308 243 0 0 0 chr11 94784162 94784189 -27059667 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 8 1308 2990 33 185 0 chr11 94784825 94785193 -27058663 + RLTR10C LTR ERVK 1 436 0 8 1308 340 277 124 74 chr11 94785231 94785261 -27058595 - MLT2B1 LTR ERVL -250 270 1 8 1308 662 274 31 53 chr11 94785261 94785488 -27058368 - MTEa LTR MaLR -157 222 1 8 1308 619 265 6 32 chr11 94785488 94785644 -27058212 + B3A SINE B2 1 152 -46 8 1308 28 48 0 0 chr11 94786097 94786139 -27057717 + AT_rich Low_complexity Low_complexity 1 42 0 8 1308 374 106 298 66 chr11 94786139 94786260 -27057596 - B2_Mm2 SINE B2 0 195 47 8 1308 1291 108 11 0 chr11 94786301 94786477 -27057379 - B2_Mm1t SINE B2 -14 179 2 8 1308 207 275 138 24 chr11 94786518 94786641 -27057215 + MIR3 SINE MIR 53 189 -19 8 1308 194 0 0 37 chr11 94787218 94787245 -27056611 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 8 1308 1132 65 7 0 chr11 94787247 94787386 -27056470 - B1_Mus2 SINE Alu -7 140 1 8 1308 279 0 0 0 chr11 94787432 94787463 -27056393 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1308 1300 25 0 0 chr11 94787463 94787623 -27056233 - B2_Mm1a SINE B2 -33 160 1 8 1308 363 351 67 14 chr11 94787747 94787955 -27055901 + MIR SINE MIR 12 230 -32 8 1308 447 19 0 0 chr11 94788476 94788528 -27055328 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1308 836 186 14 7 chr11 94788574 94788720 -27055136 - B1_Mur2 SINE Alu -2 147 1 8 1308 192 270 62 75 chr11 94788743 94788823 -27055033 - MIR3 SINE MIR -25 183 105 8 1308 203 22 0 115 chr11 94789814 94789866 -27053990 + (CACCC)n Simple_repeat Simple_repeat 1 46 0 8 1308 212 270 25 37 chr11 94791368 94791463 -27052393 - MIRc SINE MIR -92 176 73 8 1308 666 167 0 31 chr11 94791988 94792118 -27051738 - B1_Mus2 SINE Alu -13 134 9 8 1308 313 346 29 22 chr11 94792009 94792148 -27051708 - B4 SINE B4 -88 204 65 8 1308 426 115 310 26 chr11 94792546 94792662 -27051194 - B2_Mm2 SINE B2 -1 194 46 8 1308 1243 108 11 6 chr11 94792712 94792889 -27050967 - B2_Mm1t SINE B2 -14 179 2 8 1308 202 303 0 50 chr11 94793380 94793460 -27050396 + G-rich Low_complexity Low_complexity 6 81 0 8 1308 369 0 0 0 chr11 94793881 94793922 -27049934 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1308 218 234 21 0 chr11 94793996 94794043 -27049813 + CT-rich Low_complexity Low_complexity 1 48 0 8 1308 850 199 0 7 chr11 94794051 94794188 -27049668 - B1_Mus1 SINE Alu -11 137 2 8 1308 233 325 25 0 chr11 94794202 94794282 -27049574 + L2 LINE L2 2407 2488 -931 8 1308 198 0 0 0 chr11 94795022 94795044 -27048812 + (GCGTG)n Simple_repeat Simple_repeat 2 23 0 8 1308 351 0 0 0 chr11 94795570 94795609 -27048247 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1308 273 57 0 0 chr11 94799961 94799996 -27043860 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1308 693 301 137 58 chr11 94800025 94800640 -27043216 - L1MC4 LINE L1 0 8042 7380 8 1308 987 137 0 20 chr11 94809427 94809576 -27034280 + B1_Mus1 SINE Alu 3 148 0 8 1308 25 51 0 0 chr11 94813168 94813207 -27030649 + AT_rich Low_complexity Low_complexity 1 39 0 8 1308 189 74 0 0 chr11 94813910 94813937 -27029919 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1308 297 109 0 0 chr11 94813968 94814023 -27029833 + (T)n Simple_repeat Simple_repeat 1 55 0 8 1308 342 0 0 0 chr11 94814656 94814694 -27029162 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1308 384 22 0 0 chr11 94814694 94814738 -27029118 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1308 234 0 0 0 chr11 94816383 94816409 -27027447 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 8 1308 396 85 0 0 chr11 94817733 94817744 -27026112 + (GGA)n Simple_repeat Simple_repeat 3 13 0 8 1308 840 154 14 20 chr11 94817744 94817890 -27025966 + B1_Mur3 SINE Alu 5 149 0 8 1308 396 85 0 0 chr11 94817890 94817937 -27025919 + (GGA)n Simple_repeat Simple_repeat 2 48 0 8 1308 267 203 0 0 chr11 94817950 94818024 -27025832 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1308 393 117 0 0 chr11 94818087 94818147 -27025709 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 8 1308 418 177 322 0 chr11 94818148 94818269 -27025587 - B3 SINE B2 -6 210 51 8 1308 282 279 38 0 chr11 94818334 94818413 -27025443 + ID SINE ID 2 83 -141 8 1308 207 0 0 0 chr11 94818458 94818481 -27025375 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1308 1263 27 0 0 chr11 94818557 94818703 -27025153 + B1_Mus1 SINE Alu 2 147 -1 8 1308 180 0 0 0 chr11 94818704 94818724 -27025132 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1308 188 67 0 32 chr11 94819814 94819845 -27024011 + (AGGGGG)n Simple_repeat Simple_repeat 2 31 0 8 1308 525 216 9 35 chr11 94820091 94820206 -27023650 + HY1 scRNA scRNA 1 112 0 8 1308 745 160 145 56 chr11 94820198 94820372 -27023484 + B3 SINE B2 19 209 -7 8 1308 315 0 0 0 chr11 94820372 94820407 -27023449 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1308 819 141 247 0 chr11 94820416 94820586 -27023270 + B3 SINE B2 5 216 0 8 1308 473 150 12 0 chr11 94820993 94821073 -27022783 + B1_Mur2 SINE Alu 67 147 -2 8 1308 818 28 28 0 chr11 94821085 94821192 -27022664 + (GAAAA)n Simple_repeat Simple_repeat 1 110 0 8 1308 3258 46 35 5 chr11 94821345 94821740 -27022116 + MTB_Mm LTR MaLR 1 407 0 9 1308 6047 122 17 84 chr11 94821740 94822917 -27020939 + MTB_Mm-int LTR MaLR 1 1098 0 9 1308 3312 50 23 0 chr11 94822917 94823315 -27020541 + MTB_Mm LTR MaLR 1 407 0 9 1308 1096 84 7 0 chr11 94823328 94823471 -27020385 + B1_Mus1 SINE Alu 5 148 0 9 1308 289 243 0 28 chr11 94823888 94823960 -27019896 + MIR SINE MIR 77 146 -62 9 1308 342 282 97 55 chr11 94824896 94825061 -27018795 + MIR SINE MIR 79 250 -12 9 1308 335 286 93 19 chr11 94825142 94825249 -27018607 - PB1D10 SINE Alu 0 117 3 9 1308 420 243 153 7 chr11 94825249 94825311 -27018545 - ID SINE ID -140 84 3 9 1308 185 59 0 56 chr11 94825857 94825893 -27017963 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 9 1308 196 260 13 40 chr11 94825893 94825969 -27017887 + MIR SINE MIR 53 126 -136 9 1308 267 250 187 0 chr11 94826138 94826231 -27017625 + PB1D10 SINE Alu 2 110 -7 9 1308 211 178 22 0 chr11 94826238 94826283 -27017573 + B4 SINE B4 2 47 -245 9 1308 31 0 0 0 chr11 94826292 94826323 -27017533 + AT_rich Low_complexity Low_complexity 1 31 0 9 1308 189 171 0 0 chr11 94826901 94826936 -27016920 + (CAGA)n Simple_repeat Simple_repeat 1 35 0 9 1308 1048 135 0 0 chr11 94827151 94827299 -27016557 + B1_Mur3 SINE Alu 2 149 0 9 1308 408 258 144 0 chr11 94827332 94827464 -27016392 - ID_B1 SINE B4 0 224 74 9 1308 237 307 25 80 chr11 94827395 94827558 -27016298 + YREP_Mm Unknown Unknown 256 409 -1403 9 1308 479 253 159 22 chr11 94827586 94827768 -27016088 + ID_B1 SINE B4 15 221 -3 9 1308 743 164 70 0 chr11 94827776 94827904 -27015952 + B1_Mur1 SINE Alu 1 137 -12 9 1308 852 135 45 0 chr11 94827905 94828038 -27015818 + B1_Mur4 SINE Alu 2 140 -10 9 1308 298 49 0 0 chr11 94828171 94828212 -27015644 + B2_Mm2 SINE B2 1 41 -154 9 1308 1142 88 0 0 chr11 94828230 94828377 -27015479 + B1_Mus2 SINE Alu 1 147 0 9 1308 985 97 54 18 chr11 94828388 94828523 -27015333 + B2_Mm2 SINE B2 20 163 -32 9 1308 222 37 0 0 chr11 94828523 94828550 -27015306 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 9 1308 985 97 54 18 chr11 94828550 94828582 -27015274 + B2_Mm2 SINE B2 164 193 -2 9 1308 363 274 0 0 chr11 94828592 94828665 -27015191 + ID4_ SINE ID 2 74 -9 9 1308 293 68 0 22 chr11 94830004 94830049 -27013807 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 9 1308 277 280 27 0 chr11 94830050 94830125 -27013731 + GA-rich Low_complexity Low_complexity 6 82 0 9 1308 1649 32 16 0 chr11 94831271 94831461 -27012395 + B2_Mm1t SINE B2 1 193 0 9 1308 603 27 0 0 chr11 94831765 94831838 -27012018 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1308 911 155 13 7 chr11 94833098 94833247 -27010609 + B1_Mur4 SINE Alu 1 150 0 9 1308 21 0 0 0 chr11 94834985 94835006 -27008850 + AT_rich Low_complexity Low_complexity 1 21 0 9 1308 863 202 37 65 chr11 94835042 94835259 -27008597 - B3 SINE B2 -4 212 2 9 1308 968 251 33 0 chr11 94835259 94835474 -27008382 - ID_B1 SINE B4 0 224 3 9 1308 613 275 10 63 chr11 94835704 94835910 -27007946 - B2_Mm2 SINE B2 0 195 1 9 1308 1137 213 24 0 chr11 94835971 94836182 -27007674 - B3 SINE B2 0 216 1 9 1308 209 314 58 10 chr11 94836813 94836916 -27006940 + MIR3 SINE MIR 51 158 -50 9 1308 269 365 41 14 chr11 94837044 94837191 -27006665 - MIR SINE MIR -29 233 83 9 1308 1157 67 93 27 chr11 94838095 94838278 -27005578 - B2_Mm2 SINE B2 0 195 1 9 1308 684 174 28 0 chr11 94838334 94838443 -27005413 + PB1D9 SINE Alu 1 112 -8 9 1308 560 236 182 0 chr11 94838445 94838610 -27005246 + B3A SINE B2 1 195 -3 9 1308 289 263 211 0 chr11 94838624 94838780 -27005076 - L1MC5 LINE L1 -76 7885 7697 9 1308 413 287 29 19 chr11 94838871 94838974 -27004882 - PB1 SINE Alu -10 117 14 9 1308 378 226 38 38 chr11 94839011 94839117 -27004739 - PB1D10 SINE Alu 0 117 12 9 1308 213 271 14 28 chr11 94839258 94839330 -27004526 + CT-rich Low_complexity Low_complexity 2 72 0 9 1308 664 203 46 84 chr11 94839600 94839863 -27003993 - L1MC5 LINE L1 -781 7180 6928 9 1308 248 0 31 0 chr11 94840120 94840152 -27003704 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 9 1308 27 29 0 0 chr11 94840633 94840667 -27003189 + AT_rich Low_complexity Low_complexity 1 34 0 9 1308 340 291 90 41 chr11 94840859 94840981 -27002875 - ID_B1 SINE B4 -2 222 95 9 1308 211 306 129 61 chr11 94840864 94840996 -27002860 - B1F SINE Alu -7 142 2 9 1308 297 51 0 0 chr11 94841450 94841489 -27002367 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1308 700 223 0 48 chr11 94841515 94841661 -27002195 + B1_Mur1 SINE Alu 1 139 -10 9 1308 216 0 0 0 chr11 94841707 94841731 -27002125 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1308 315 0 0 0 chr11 94841847 94841882 -27001974 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1308 432 319 101 39 chr11 94841916 94842174 -27001682 - B4A SINE B4 -18 274 1 9 1308 699 115 0 0 chr11 94842318 94842422 -27001434 + B1_Mur4 SINE Alu 34 137 -13 9 1308 680 244 0 7 chr11 94842422 94842558 -27001298 + B3 SINE B2 8 142 -74 9 1308 219 139 0 0 chr11 94842632 94842668 -27001188 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9 1308 810 212 0 14 chr11 94842669 94842817 -27001039 - B1_Mur2 SINE Alu -3 146 1 9 1308 955 320 105 28 chr11 94842929 94843608 -27000248 + L1M5 LINE L1 4558 5288 -858 9 1308 346 269 0 0 chr11 94843608 94843686 -27000170 + PB1D10 SINE Alu 32 109 -8 9 1308 306 191 127 0 chr11 94843686 94843749 -27000107 + ID4_ SINE ID 8 78 -5 9 1308 619 242 7 29 chr11 94843774 94843910 -26999946 + B1_Mus2 SINE Alu 2 134 -13 9 1308 1256 84 0 6 chr11 94843916 94844096 -26999760 + (GAA)n Simple_repeat Simple_repeat 1 179 0 9 1308 714 155 17 17 chr11 94844096 94844214 -26999642 + PB1D9 SINE Alu 2 119 -1 9 1308 440 35 17 0 chr11 94844214 94844272 -26999584 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1308 325 362 29 119 chr11 94844354 94844500 -26999356 + MLT1L LTR MaLR 83 234 -376 9 1308 1381 12 12 0 chr11 94844500 94844667 -26999189 + (GAA)n Simple_repeat Simple_repeat 2 170 0 9 1308 325 362 29 119 chr11 94844667 94844974 -26998882 + MLT1L LTR MaLR 235 495 -115 9 1308 750 287 99 15 chr11 94845264 94845526 -26998330 + B4 SINE B4 7 290 -2 9 1308 545 254 36 0 chr11 94845567 94845705 -26998151 + B1_Mur1 SINE Alu 1 143 -6 9 1308 302 376 61 61 chr11 94845718 94846061 -26997795 + L1M5 LINE L1 5489 5831 -409 9 1308 2181 93 50 34 chr11 94846068 94846390 -26997466 + ORR1A2 LTR MaLR 1 327 0 9 1308 546 223 102 0 chr11 94846554 94846720 -26997136 + L1MB3 LINE L1 5872 6054 -129 9 1308 463 69 28 0 chr11 94846742 94846814 -26997042 + (TC)n Simple_repeat Simple_repeat 2 75 0 9 1308 932 240 18 22 chr11 94846814 94847040 -26996816 - B4 SINE B4 -67 225 1 9 1308 24 0 0 0 chr11 94847167 94847191 -26996665 + AT_rich Low_complexity Low_complexity 1 24 0 9 1308 1202 48 7 0 chr11 94847523 94847668 -26996188 + B1_Mm SINE Alu 2 147 0 9 1308 423 0 0 0 chr11 94847916 94847963 -26995893 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1308 314 237 13 0 chr11 94848209 94848285 -26995571 + ID4_ SINE ID 2 78 -5 9 1308 200 279 72 14 chr11 94848805 94848874 -26994982 - MIRb SINE MIR -156 112 40 9 1308 207 0 0 0 chr11 94849145 94849168 -26994688 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1308 258 342 0 0 chr11 94849546 94849625 -26994231 - MIRb SINE MIR -140 128 50 9 1308 768 215 131 15 chr11 94850411 94850609 -26993247 + ID_B1 SINE B4 1 221 -3 9 1308 253 294 0 14 chr11 94851080 94851149 -26992707 + G-rich Low_complexity Low_complexity 5 72 0 9 1308 227 399 61 0 chr11 94851801 94851949 -26991907 - MER5A DNA MER1_type -28 161 5 9 1308 213 39 0 0 chr11 94852345 94852371 -26991485 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 9 1308 252 297 8 51 chr11 94857372 94857489 -26986367 + CT-rich Low_complexity Low_complexity 2 113 0 9 1308 707 132 114 16 chr11 94858516 94858639 -26985217 + B1_Mur4 SINE Alu 3 137 -13 9 1308 220 273 0 0 chr11 94858647 94858691 -26985165 + polypurine Low_complexity Low_complexity 1 44 0 9 1308 204 269 75 0 chr11 94859543 94859610 -26984246 - L2b LINE L2 -17 3358 3287 9 1308 193 329 79 42 chr11 94859751 94859916 -26983940 - L2b LINE L2 -1 3386 3216 9 1308 981 109 7 39 chr11 94859934 94860087 -26983769 + B1_Mur3 SINE Alu 1 148 -1 9 1308 241 269 151 0 chr11 94860102 94860195 -26983661 - L2b LINE L2 -195 3180 3074 9 1308 849 177 13 13 chr11 94860214 94860363 -26983493 + B1_Mur2 SINE Alu 1 149 0 9 1308 213 193 50 50 chr11 94860393 94860453 -26983403 - ID4_ SINE ID -21 62 3 9 1308 194 302 76 38 chr11 94868967 94869098 -26974758 - L3 LINE CR1 -227 4262 4127 9 1308 324 0 0 0 chr11 94869675 94869711 -26974145 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1308 685 149 379 0 chr11 94869732 94869893 -26973963 + URR1B DNA MER1_type 4 225 0 9 1308 199 306 73 9 chr11 94870447 94870556 -26973300 + L2 LINE L2 2535 2650 -769 9 1308 202 374 33 0 chr11 94870641 94870732 -26973124 + L2 LINE L2 2762 2855 -564 9 1308 204 202 140 97 chr11 94870996 94871089 -26972767 + L2b LINE L2 3279 3375 0 9 1308 22 35 0 0 chr11 94871236 94871265 -26972591 + GC_rich Low_complexity Low_complexity 1 29 0 9 1308 378 0 0 0 chr11 94871511 94871553 -26972303 + (TC)n Simple_repeat Simple_repeat 1 42 0 9 1308 390 91 0 0 chr11 94871553 94871607 -26972249 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1308 1032 41 29 23 chr11 94872116 94872291 -26971565 + (GAGAA)n Simple_repeat Simple_repeat 5 180 0 9 1308 762 48 0 0 chr11 94872620 94872723 -26971133 + (TG)n Simple_repeat Simple_repeat 2 104 0 9 1308 204 111 0 0 chr11 94872739 94872775 -26971081 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1308 1150 79 0 0 chr11 94874638 94874777 -26969079 + B1_Mus2 SINE Alu 1 139 -8 9 1308 1305 83 0 0 chr11 94874777 94874957 -26968899 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1308 207 0 0 0 chr11 94874967 94874990 -26968866 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1308 279 297 141 0 chr11 94875216 94875344 -26968512 + MIR3 SINE MIR 36 181 -27 1 1308 240 35 0 0 chr11 94875625 94875654 -26968202 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1308 468 277 93 20 chr11 94875953 94876104 -26967752 + RSINE1 SINE B4 4 165 0 1 1308 29 0 0 0 chr11 94876138 94876167 -26967689 + AT_rich Low_complexity Low_complexity 1 29 0 1 1308 679 273 84 80 chr11 94876170 94876233 -26967623 + B4 SINE B4 40 164 -128 1 1308 867 103 0 0 chr11 94876233 94876359 -26967497 + B1_Mus1 SINE Alu 13 138 -10 1 1308 679 273 84 80 chr11 94876359 94876421 -26967435 + B4 SINE B4 165 291 -1 1 1308 214 325 52 0 chr11 94876465 94876542 -26967314 - MIR3 SINE MIR -120 88 8 1 1308 405 0 0 0 chr11 94876616 94876661 -26967195 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1308 210 350 143 25 chr11 94877428 94877589 -26966267 + MIR3 SINE MIR 8 187 -21 1 1308 222 270 48 0 chr11 94877624 94877687 -26966169 + MIR SINE MIR 37 102 -160 1 1308 883 114 0 0 chr11 94878169 94878300 -26965556 - B1_Mus2 SINE Alu -1 146 16 1 1308 303 28 0 0 chr11 94878307 94878343 -26965513 + (CCA)n Simple_repeat Simple_repeat 1 36 0 1 1308 248 293 88 100 chr11 94878446 94878776 -26965080 - L2 LINE L2 -357 3062 2737 1 1308 204 182 0 0 chr11 94878787 94878831 -26965025 + CT-rich Low_complexity Low_complexity 1 44 0 1 1308 640 242 24 73 chr11 94878907 94879112 -26964744 + B3A SINE B2 2 196 -2 1 1308 819 57 0 0 chr11 94879293 94879398 -26964458 + (GGGAGA)n Simple_repeat Simple_repeat 5 109 0 1 1308 581 174 73 0 chr11 94879398 94879507 -26964349 - B1_Mur3 SINE Alu -32 117 1 1 1308 345 277 60 17 chr11 94879507 94879525 -26964331 - ID_B1 SINE B4 -86 206 68 1 1308 573 55 0 0 chr11 94879866 94879939 -26963917 + (TCC)n Simple_repeat Simple_repeat 1 73 0 1 1308 191 113 130 0 chr11 94880984 94881036 -26962820 - MIRc SINE MIR -107 161 100 1 1308 221 404 98 43 chr11 94881655 94881911 -26961945 - L2b LINE L2 -18 3357 3088 1 1308 347 268 244 0 chr11 94881942 94882065 -26961791 + ID_B1 SINE B4 70 222 -2 1 1308 991 153 0 7 chr11 94882087 94882232 -26961624 + B1_Mus1 SINE Alu 2 145 -3 1 1308 240 264 0 0 chr11 94883034 94883087 -26960769 + CT-rich Low_complexity Low_complexity 1 53 0 1 1308 452 207 26 51 chr11 94883087 94883204 -26960652 - PB1D10 SINE Alu -1 116 3 1 1308 338 255 31 21 chr11 94883699 94883795 -26960061 - MIRc SINE MIR -89 179 83 1 1308 189 329 49 0 chr11 94883906 94883988 -26959868 - L2b LINE L2 -47 3328 3243 1 1308 986 181 10 41 chr11 94884023 94884219 -26959637 - B2_Mm2 SINE B2 -4 191 2 1 1308 441 0 0 0 chr11 94885367 94885416 -26958440 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 1 1308 1128 82 6 0 chr11 94885416 94885575 -26958281 - B2_Mm1a SINE B2 -33 160 1 1 1308 216 232 13 36 chr11 94890676 94890755 -26953101 + L2a LINE L2 3233 3356 -70 1 1308 222 208 0 0 chr11 94890858 94890906 -26952950 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1 1308 928 171 11 16 chr11 94891533 94892273 -26951583 + (TATG)n Simple_repeat Simple_repeat 1 735 0 1 1308 891 126 89 0 chr11 94892282 94892417 -26951439 - B1_Mus2 SINE Alu 0 147 1 1 1308 584 281 59 0 chr11 94892643 94892796 -26951060 + RSINE1 SINE B4 4 165 0 1 1308 281 270 16 0 chr11 94892930 94892993 -26950863 - B1F SINE Alu -66 83 20 1 1308 192 325 38 0 chr11 94894986 94895066 -26948790 + MIR SINE MIR 69 151 -57 1 1309 251 332 43 4 chr11 94897289 94897407 -26946449 + MIR SINE MIR 27 149 -59 1 1309 1570 176 256 3 chr11 94897637 94897973 -26945883 + MTC LTR MaLR 1 421 0 1 1309 370 301 32 16 chr11 94899154 94899279 -26944577 - PB1 SINE Alu 0 127 1 1 1309 333 270 27 0 chr11 94899717 94899791 -26944065 - ID4 SINE ID -6 77 2 1 1309 406 211 28 19 chr11 94899791 94899897 -26943959 - PB1D10 SINE Alu -1 116 10 1 1309 231 36 0 0 chr11 94903238 94903266 -26940590 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1309 302 268 14 0 chr11 94903284 94903355 -26940501 + ID SINE ID 3 74 -150 1 1309 285 283 12 30 chr11 94903355 94903389 -26940467 + ID4 SINE ID 3 103 -49 1 1309 350 198 12 167 chr11 94903820 94903940 -26939916 + B1F SINE Alu 27 148 -1 1 1309 290 282 28 0 chr11 94903952 94904023 -26939833 + ID2 SINE ID 2 74 -9 1 1309 274 302 103 103 chr11 94904225 94904380 -26939476 + B4 SINE B4 69 223 -69 1 1309 760 138 77 0 chr11 94904253 94904383 -26939473 + B1_Mus1 SINE Alu 9 148 0 1 1309 575 251 34 122 chr11 94904428 94904632 -26939224 - B3A SINE B2 -6 192 7 1 1309 347 362 106 38 chr11 94904839 94905103 -26938753 + L2b LINE L2 3062 3343 -32 1 1309 513 32 0 0 chr11 94905442 94905505 -26938351 + (TCCC)n Simple_repeat Simple_repeat 1 63 0 1 1309 546 312 99 25 chr11 94908718 94908961 -26934895 + MIR SINE MIR 1 261 -1 1 1309 309 240 124 10 chr11 94909309 94909406 -26934450 + PB1D10 SINE Alu 9 116 -1 1 1309 416 282 13 45 chr11 94909382 94909415 -26934441 + ID_B1 SINE B4 62 212 -12 1 1309 673 154 16 0 chr11 94909415 94909538 -26934318 + B1_Mur4 SINE Alu 14 138 -12 1 1309 465 103 0 0 chr11 94909538 94909606 -26934250 + (TGAA)n Simple_repeat Simple_repeat 4 71 0 1 1309 478 218 29 10 chr11 94909637 94909739 -26934117 - PB1D10 SINE Alu 0 117 14 1 1309 581 331 96 44 chr11 94909785 94910265 -26933591 - L1MC4a LINE L1 -1958 5924 5420 1 1309 667 160 0 48 chr11 94910296 94910421 -26933435 - PB1D9 SINE Alu -1 119 1 1 1309 883 170 0 21 chr11 94910427 94910571 -26933285 - B1_Mur3 SINE Alu -7 142 2 1 1309 254 333 0 0 chr11 94910630 94910714 -26933142 - B3A SINE B2 -18 180 97 1 1309 1127 157 84 73 chr11 94910711 94910984 -26932872 + RLTR31A_Mm LTR ERVK 229 557 0 1 1309 752 161 0 0 chr11 94910984 94911108 -26932748 + B1_Mur1 SINE Alu 12 135 -14 1 1309 840 133 0 0 chr11 94911132 94911312 -26932544 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1309 500 217 0 7 chr11 94911323 94911462 -26932394 + GA-rich Low_complexity Low_complexity 3 140 0 1 1309 441 259 19 0 chr11 94911859 94911967 -26931889 - B1F SINE Alu -2 147 38 1 1309 28 29 0 0 chr11 94911996 94912031 -26931825 + AT_rich Low_complexity Low_complexity 1 35 0 1 1309 857 179 8 0 chr11 94912044 94912178 -26931678 - B1_Mur2 SINE Alu -10 139 5 1 1309 243 0 0 0 chr11 94912217 94912244 -26931612 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1309 794 288 45 59 chr11 94912264 94912552 -26931304 - B4A SINE B4 -8 284 1 1 1309 240 340 47 0 chr11 94912556 94912662 -26931194 - B1_Mus1 SINE Alu 0 148 38 1 1309 396 0 0 0 chr11 94913638 94913682 -26930174 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1309 1579 27 11 11 chr11 94914717 94914904 -26928952 + B2_Mm2 SINE B2 2 188 -7 1 1309 311 361 0 0 chr11 94915596 94915693 -26928163 + MIR SINE MIR 60 156 -106 1 1309 980 179 98 44 chr11 94915775 94915980 -26927876 + B3 SINE B2 1 216 0 1 1309 617 269 34 149 chr11 94916008 94916336 -26927520 + B4 SINE B4 3 292 0 1 1309 1185 82 0 0 chr11 94916416 94916563 -26927293 + B1_Mus2 SINE Alu 1 147 0 1 1309 1605 37 11 0 chr11 94916567 94916758 -26927098 + B2_Mm1t SINE B2 1 193 0 1 1309 180 314 0 67 chr11 94917077 94917152 -26926704 - MIRb SINE MIR -158 110 41 1 1309 263 286 161 0 chr11 94917370 94917482 -26926374 + MIRc SINE MIR 16 145 -123 1 1309 219 103 0 0 chr11 94919982 94920021 -26923835 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1309 1219 68 0 0 chr11 94920025 94920172 -26923684 - B1_Mus2 SINE Alu 0 147 1 1 1309 199 238 0 45 chr11 94921350 94921416 -26922440 - MIR SINE MIR -79 129 67 1 1309 1211 82 6 16 chr11 94921609 94922226 -26921630 + (TG)n Simple_repeat Simple_repeat 1 610 0 1 1309 184 175 349 0 chr11 94922235 94922298 -26921558 - MIR SINE MIR -104 158 74 1 1309 214 315 0 0 chr11 94924269 94924323 -26919533 + L2b LINE L2 3321 3374 -1 1 1309 243 0 0 0 chr11 94924607 94924634 -26919222 + (CAA)n Simple_repeat Simple_repeat 3 29 0 1 1309 905 180 0 26 chr11 94924701 94924855 -26919001 - B1_Mur4 SINE Alu 0 150 1 1 1309 670 182 26 51 chr11 94924912 94925068 -26918788 + B3 SINE B2 1 152 -64 1 1309 702 206 15 7 chr11 94925096 94925233 -26918623 - B3 SINE B2 -12 204 67 1 1309 915 168 200 11 chr11 94925428 94925603 -26918253 + B3 SINE B2 2 209 -7 1 1309 478 219 35 44 chr11 94925719 94925870 -26917986 - B1F SINE Alu 0 149 2 1 1309 1279 108 32 5 chr11 94925924 94926110 -26917746 + B2_Mm2 SINE B2 3 193 -2 1 1309 200 136 67 11 chr11 94926291 94926380 -26917476 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1309 390 244 0 0 chr11 94926386 94926464 -26917392 + B1F SINE Alu 24 101 -48 1 1309 258 32 0 0 chr11 94926481 94926512 -26917344 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1309 546 16 0 0 chr11 94926512 94926574 -26917282 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1309 864 301 42 32 chr11 94926610 94926895 -26916961 + B4A SINE B4 1 288 -4 1 1309 1429 65 43 0 chr11 94927452 94927637 -26916219 + B2_Mm2 SINE B2 2 194 -1 1 1309 22 0 0 0 chr11 94927909 94927931 -26915925 + AT_rich Low_complexity Low_complexity 1 22 0 1 1309 675 99 0 10 chr11 94927977 94928079 -26915777 - B1_Mm SINE Alu -1 146 46 1 1309 579 222 0 17 chr11 94928169 94928288 -26915568 - B3 SINE B2 0 216 100 1 1309 566 153 20 0 chr11 94928285 94928383 -26915473 + B1_Mus1 SINE Alu 26 125 -23 1 1309 349 306 129 0 chr11 94928691 94928861 -26914995 + L1ME2 LINE L1 5960 6151 -13 1 1309 1468 88 0 15 chr11 94929243 94929439 -26914417 + B2_Mm2 SINE B2 1 193 -2 1 1309 195 42 0 0 chr11 94929805 94929829 -26914027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1309 256 301 45 64 chr11 94929829 94929939 -26913917 - B1F SINE Alu -10 139 32 1 1309 948 257 18 27 chr11 94930629 94930853 -26913003 - ID_B1 SINE B4 -2 222 1 1 1309 221 297 27 13 chr11 94934019 94934094 -26909762 - PB1D10 SINE Alu -14 103 28 1 1309 674 201 22 22 chr11 94934579 94934716 -26909140 + B1_Mur2 SINE Alu 1 137 -12 1 1309 684 35 0 0 chr11 94934716 94934803 -26909053 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 1 1309 222 37 0 0 chr11 94934868 94934895 -26908961 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1309 950 174 0 7 chr11 94934896 94935046 -26908810 - B1_Mur4 SINE Alu -1 149 1 1 1309 206 222 0 18 chr11 94938031 94938086 -26905770 + (CCCCG)n Simple_repeat Simple_repeat 3 56 0 1 1309 298 294 205 19 chr11 94939481 94939637 -26904219 - MIR SINE MIR -71 191 7 1 1309 392 296 50 36 chr11 94940060 94940200 -26903656 - RSINE1 SINE B4 -20 145 4 1 1309 730 274 130 18 chr11 94941457 94941795 -26902061 + LTR52 LTR ERVL 46 421 0 1 1309 197 108 27 0 chr11 94942302 94942339 -26901517 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 1 1309 1708 16 0 0 chr11 94942684 94942871 -26900985 + B2_Mm1a SINE B2 2 188 -5 1 1309 458 191 32 11 chr11 94943004 94943099 -26900757 + B1F SINE Alu 48 144 -5 1 1309 216 245 38 0 chr11 94943512 94943565 -26900291 + (CATG)n Simple_repeat Simple_repeat 2 56 0 1 1309 462 262 85 146 chr11 94944268 94944644 -26899212 + ORR1E LTR MaLR 1 353 -6 1 1309 447 243 3 2 chr11 94944752 94944847 -26899009 + PB1D10 SINE Alu 23 115 -2 1 1309 554 161 67 67 chr11 94944976 94945096 -26898760 - PB1D9 SINE Alu 0 120 1 1 1309 326 259 12 0 chr11 94945171 94945252 -26898604 - RSINE1 SINE B4 -83 82 1 1 1309 394 309 19 9 chr11 94945252 94945360 -26898496 - PB1D10 SINE Alu -8 109 1 1 1309 1545 47 11 0 chr11 94945993 94946184 -26897672 - B2_Mm1t SINE B2 0 193 1 1 1309 243 0 0 0 chr11 94946543 94946570 -26897286 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1309 596 67 0 11 chr11 94946570 94946661 -26897195 - B1_Mm SINE Alu 0 147 58 1 1309 296 259 11 11 chr11 94946805 94946895 -26896961 + MIRb SINE MIR 91 180 -88 1 1309 188 167 0 20 chr11 94947299 94947348 -26896508 + CT-rich Low_complexity Low_complexity 1 48 0 1 1309 396 0 0 0 chr11 94948853 94948897 -26894959 + (GGATG)n Simple_repeat Simple_repeat 3 46 0 1 1309 369 0 0 0 chr11 94949431 94949472 -26894384 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1309 759 274 42 13 chr11 94951030 94951267 -26892589 + L1MB8 LINE L1 4919 5162 -984 1 1309 442 121 0 0 chr11 94951277 94951343 -26892513 - B1_Mur3 SINE Alu -42 107 42 1 1309 315 0 0 162 chr11 94951346 94951513 -26892343 + (CTCTG)n Simple_repeat Simple_repeat 1 140 0 1 1309 260 164 48 16 chr11 94951513 94951575 -26892281 - ID_B1 SINE B4 -77 147 84 1 1309 349 111 0 0 chr11 94951522 94951576 -26892280 - B1_Mur4 SINE Alu -95 55 2 1 1309 601 264 42 0 chr11 94951578 94951722 -26892134 + B3A SINE B2 31 180 -18 1 1309 288 0 0 0 chr11 94951731 94951763 -26892093 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1309 651 220 0 8 chr11 94951766 94951885 -26891971 + PB1D9 SINE Alu 2 119 -1 1 1309 273 287 33 0 chr11 94951908 94952002 -26891854 + B1F1 SINE Alu 3 97 -20 1 1309 279 0 0 0 chr11 94952002 94952033 -26891823 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1309 1036 136 7 0 chr11 94952123 94952270 -26891586 + B1_Mur4 SINE Alu 2 149 -1 1 1309 338 144 12 35 chr11 94952272 94952358 -26891498 + Lx2A LINE L1 6923 7006 -2 1 1309 967 162 210 0 chr11 94952377 94952544 -26891312 + B3 SINE B2 5 206 -10 1 1309 22 35 0 0 chr11 94952544 94952573 -26891283 + AT_rich Low_complexity Low_complexity 1 29 0 1 1309 1222 49 0 0 chr11 94952718 94952862 -26890994 + B1_Mus2 SINE Alu 3 146 -1 1 1309 3061 42 44 20 chr11 94952992 94953382 -26890474 + MTB LTR MaLR 1 399 -1 1 1309 4681 212 60 7 chr11 94953580 94954886 -26888970 + RMER1A Other Other 8 1030 0 1 1309 798 91 190 0 chr11 94954893 94955014 -26888842 + B1_Mus2 SINE Alu 2 145 -2 1 1309 482 151 32 0 chr11 94955120 94955213 -26888643 + B2_Mm2 SINE B2 99 194 -1 1 1309 938 264 61 0 chr11 94955284 94955561 -26888295 + L1MB8 LINE L1 5572 5865 -313 1 1309 249 83 146 0 chr11 94955565 94955613 -26888243 - ORR1C2 LTR MaLR 0 384 330 1 1309 745 193 20 40 chr11 94955635 94955786 -26888070 - B1_Mur4 SINE Alu -1 149 2 1 1309 2015 108 61 6 chr11 94955787 94956113 -26887743 - ORR1C2 LTR MaLR -40 344 1 1 1309 292 279 48 12 chr11 94956115 94956234 -26887622 + L1MB8 LINE L1 5872 5992 -186 1 1309 381 260 19 48 chr11 94956286 94956391 -26887465 - PB1 SINE Alu 0 127 26 1 1309 219 135 0 0 chr11 94956391 94956428 -26887428 - MIRc SINE MIR -115 153 117 1 1309 348 263 115 10 chr11 94956446 94956542 -26887314 - PB1D10 SINE Alu -11 106 1 1 1309 724 135 49 21 chr11 94956576 94956720 -26887136 + B2_Mm2 SINE B2 34 181 -14 1 1309 765 103 154 0 chr11 94956720 94956837 -26887019 + B1_Mur4 SINE Alu 1 135 -15 1 1309 1321 110 10 20 chr11 94957481 94957676 -26886180 - B2_Mm2 SINE B2 -2 193 1 1 1309 966 133 186 37 chr11 94957677 94957865 -26885991 - B3 SINE B2 0 216 1 1 1309 423 0 0 0 chr11 94958703 94958750 -26885106 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1309 519 17 0 0 chr11 94959254 94959314 -26884542 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1 1309 353 294 0 0 chr11 94959331 94959416 -26884440 - RSINE1 SINE B4 -24 141 57 1 1309 216 0 0 0 chr11 94959840 94959864 -26883992 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1309 622 239 101 12 chr11 94960107 94960276 -26883580 + ID_B1 SINE B4 38 221 -3 1 1309 1080 103 0 33 chr11 94960577 94960727 -26883129 - B1_Mus1 SINE Alu -1 147 3 1 1309 315 0 0 0 chr11 94961718 94961753 -26882103 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1309 872 132 27 34 chr11 94962251 94962400 -26881456 - B1_Mur4 SINE Alu 0 150 3 1 1309 381 283 155 106 chr11 94962891 94963001 -26880855 - B4 SINE B4 -13 279 164 1 1309 480 35 0 0 chr11 94963001 94963059 -26880797 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1309 189 0 0 0 chr11 94963059 94963079 -26880777 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1309 381 283 155 106 chr11 94963079 94963232 -26880624 - B4 SINE B4 -129 163 3 1 1309 389 328 63 108 chr11 94963279 94963468 -26880388 - L1ME3A LINE L1 -72 6101 5909 1 1309 917 232 24 5 chr11 94963468 94963680 -26880176 - B3 SINE B2 0 216 1 1 1309 389 328 63 108 chr11 94963680 94963999 -26879857 - L1ME3A LINE L1 -265 5908 5616 1 1309 207 0 0 0 chr11 94964144 94964167 -26879689 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1309 1169 78 0 0 chr11 94964173 94964315 -26879541 - B1_Mm SINE Alu -5 142 1 1 1309 225 213 0 60 chr11 94964444 94964494 -26879362 - 4.5SRNA scRNA scRNA -11 83 37 1 1309 335 183 27 40 chr11 94964511 94964585 -26879271 - L1ME3A LINE L1 -989 5157 5085 1 1309 472 254 3 17 chr11 94964588 94964707 -26879149 + PB1D10 SINE Alu 1 117 0 1 1309 1146 123 37 21 chr11 94964712 94964903 -26878953 + B2_Mm2 SINE B2 1 194 -1 1 1309 186 71 0 0 chr11 94965092 94965120 -26878736 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1309 472 191 0 11 chr11 94965122 94965217 -26878639 - B1_Mur1 SINE Alu -14 135 42 1 1309 478 306 62 14 chr11 94965236 94965382 -26878474 - RSINE1 SINE B4 -2 163 11 1 1309 447 137 0 0 chr11 94966371 94966444 -26877412 + (GGA)n Simple_repeat Simple_repeat 2 74 0 1 1309 275 312 12 0 chr11 94968410 94968490 -26875366 - MT2B LTR ERVL -340 261 181 1 1309 1099 100 135 0 chr11 94968531 94968701 -26875155 + B2_Mm2 SINE B2 2 194 -1 1 1309 269 254 30 0 chr11 94969056 94969123 -26874733 + MIR SINE MIR 79 147 -61 1 1309 279 0 0 0 chr11 94969792 94969823 -26874033 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1309 966 148 11 28 chr11 94969996 94970177 -26873679 + B2_Mm2 SINE B2 17 194 -1 1 1309 291 225 95 63 chr11 94970235 94970330 -26873526 - MLT2D LTR ERVL -15 545 448 1 1309 257 132 55 36 chr11 94970639 94970694 -26873162 - ID_B1 SINE B4 -4 220 165 1 1309 254 134 51 152 chr11 94970640 94970719 -26873137 - B1F SINE Alu -5 144 74 1 1309 722 203 99 0 chr11 94971349 94971531 -26872325 - B3 SINE B2 0 216 17 1 1309 729 172 0 16 chr11 94971616 94971740 -26872116 + B1_Mus2 SINE Alu 1 122 -25 1 1309 498 262 0 87 chr11 94971787 94971925 -26871931 + RSINE1 SINE B4 12 137 -28 1 1309 1490 51 17 0 chr11 94971990 94972167 -26871689 + B2_Mm2 SINE B2 2 181 -14 1 1309 1414 89 11 0 chr11 94972272 94972463 -26871393 - B2_Mm1t SINE B2 0 193 1 1 1309 248 296 0 27 chr11 94972479 94972552 -26871304 + PB1D10 SINE Alu 1 71 -46 1 1309 893 121 35 7 chr11 94972601 94972743 -26871113 + B1_Mus1 SINE Alu 3 148 0 1 1309 310 241 11 46 chr11 94973071 94973158 -26870698 - RSINE1 SINE B4 -36 129 46 1 1309 821 98 30 0 chr11 94973174 94973306 -26870550 + B2_Mm2 SINE B2 60 195 0 1 1309 278 282 0 13 chr11 94973335 94973414 -26870442 - L1MC LINE L1 -788 5545 5468 1 1309 189 0 0 0 chr11 94973435 94973456 -26870400 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1309 1280 86 11 22 chr11 94973539 94973718 -26870138 - B2_Mm1t SINE B2 -14 179 3 1 1309 273 269 33 33 chr11 94974298 94974419 -26869437 + PB1D10 SINE Alu 21 139 -10 1 1309 312 27 0 0 chr11 94974419 94974456 -26869400 + (GGA)n Simple_repeat Simple_repeat 3 39 0 1 1309 342 0 0 0 chr11 94975021 94975059 -26868797 + (CCA)n Simple_repeat Simple_repeat 3 40 0 1 1309 465 134 10 30 chr11 94975195 94975295 -26868561 + CT-rich Low_complexity Low_complexity 3 100 0 1 1309 589 204 81 29 chr11 94975303 94975439 -26868417 - B1_Mur4 SINE Alu -7 143 1 1 1309 325 252 0 139 chr11 94975332 94975461 -26868395 - MT2B LTR ERVL -344 257 147 1 1309 381 328 32 14 chr11 94975606 94975825 -26868031 + L1ME3 LINE L1 5665 5892 -270 1 1309 1074 135 0 0 chr11 94975907 94976085 -26867771 + (GGA)n Simple_repeat Simple_repeat 2 179 0 1 1309 750 156 0 0 chr11 94976087 94976222 -26867634 + GA-rich Low_complexity Low_complexity 2 136 0 1 1309 230 277 0 0 chr11 94976222 94976287 -26867569 + L1ME3 LINE L1 5874 5938 -235 1 1309 738 245 109 26 chr11 94976288 94976481 -26867375 + B3 SINE B2 2 210 -6 1 1309 830 94 17 8 chr11 94976509 94976627 -26867229 + PB1D9 SINE Alu 2 120 0 1 1309 1373 83 0 22 chr11 94977191 94977375 -26866481 - B2_Mm2 SINE B2 -14 181 2 1 1309 709 115 0 24 chr11 94977386 94977511 -26866345 + (TTTTC)n Simple_repeat Simple_repeat 4 125 0 1 1309 629 229 11 49 chr11 94977534 94977554 -26866302 - ID_B1 SINE B4 -46 246 160 1 1309 904 129 0 0 chr11 94977554 94977693 -26866163 - B1_Mus1 SINE Alu -1 147 9 1 1309 629 229 11 49 chr11 94977693 94977710 -26866146 - ID_B1 SINE B4 -46 159 74 1 1309 644 45 0 0 chr11 94977890 94977978 -26865878 - L1Md_F2 LINE L1 -12 6570 6483 1 1309 908 183 0 0 chr11 94979131 94979273 -26864583 - B1_Mur3 SINE Alu -6 143 2 1 1309 252 95 0 0 chr11 94980841 94980883 -26862973 + B1_Mm SINE Alu 106 147 0 1 1309 216 0 0 0 chr11 94980886 94980910 -26862946 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1309 225 231 0 19 chr11 94980927 94980980 -26862876 - ORSL DNA Tip100 -162 113 62 1 1309 396 0 0 0 chr11 94981223 94981267 -26862589 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1309 315 248 36 27 chr11 94982481 94982593 -26861263 + GA-rich Low_complexity Low_complexity 4 116 0 1 1309 467 288 48 43 chr11 94984340 94984547 -26859309 - MIR SINE MIR -14 248 41 1 1309 186 43 0 0 chr11 94985903 94985926 -26857930 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1309 216 122 0 0 chr11 94986261 94986302 -26857554 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1309 27 29 0 0 chr11 94986559 94986593 -26857263 + AT_rich Low_complexity Low_complexity 1 34 0 1 1309 288 53 0 0 chr11 94987282 94987320 -26856536 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1309 423 0 0 0 chr11 94987559 94987606 -26856250 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1309 229 262 0 36 chr11 94988083 94988166 -26855690 + GA-rich Low_complexity Low_complexity 4 83 0 1 1309 263 260 81 14 chr11 94988607 94988681 -26855175 + ID4_ SINE ID 5 83 0 1 1309 303 193 22 11 chr11 94988681 94988770 -26855086 + GA-rich Low_complexity Low_complexity 2 91 0 1 1309 325 314 0 173 chr11 94988780 94988836 -26855020 + B1F SINE Alu 14 65 -84 1 1309 477 0 0 0 chr11 94988836 94988889 -26854967 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 1309 325 314 0 173 chr11 94988889 94988994 -26854862 + B1F SINE Alu 66 147 -2 1 1309 879 143 14 0 chr11 94989051 94989191 -26854665 + B1_Mur4 SINE Alu 9 150 0 1 1309 479 254 14 37 chr11 94989541 94989716 -26854140 + MIRb SINE MIR 55 233 -35 1 1309 242 286 30 7 chr11 94991527 94991630 -26852226 - MIR SINE MIR -137 139 36 1 1309 375 284 27 82 chr11 94992353 94992499 -26851357 - MIRb SINE MIR -8 260 123 1 1309 383 338 13 46 chr11 94992496 94992648 -26851208 + MIRb SINE MIR 87 233 -35 1 1309 255 307 37 136 chr11 94992815 94992893 -26850963 + B4 SINE B4 3 80 -212 1 1309 290 26 0 25 chr11 94992893 94992933 -26850923 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1309 610 163 146 8 chr11 94992933 94993063 -26850793 + B1_Mus1 SINE Alu 1 148 0 1 1309 255 307 37 136 chr11 94993063 94993145 -26850711 + B4 SINE B4 81 147 -145 1 1309 363 202 0 0 chr11 94993549 94993638 -26850218 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1309 222 281 0 99 chr11 94993772 94993843 -26850013 + B4A SINE B4 82 145 -147 1 1309 469 282 0 18 chr11 94993788 94993900 -26849956 + PB1D10 SINE Alu 6 115 -2 1 1309 207 0 0 0 chr11 94993902 94993925 -26849931 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1 1309 287 276 248 30 chr11 94994332 94994433 -26849423 - RSINE1 SINE B4 -40 125 3 1 1309 519 173 17 68 chr11 94994467 94994585 -26849271 - PB1D9 SINE Alu -8 112 1 1 1309 1257 209 164 9 chr11 94994635 94994953 -26848903 + MTD LTR MaLR 1 367 -52 1 1309 531 286 8 117 chr11 94995160 94995409 -26848447 - ID_B1 SINE B4 -2 222 1 1 1309 1251 54 0 0 chr11 94995999 94996147 -26847709 - B1_Mus1 SINE Alu 0 148 1 1 1309 186 264 43 65 chr11 94996833 94996926 -26846930 - MIRc SINE MIR -134 134 44 1 1309 22 0 0 0 chr11 94997029 94997051 -26846805 + GC_rich Low_complexity Low_complexity 1 22 0 1 1309 189 74 0 0 chr11 94997354 94997381 -26846475 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1309 25 51 0 0 chr11 94997394 94997433 -26846423 + AT_rich Low_complexity Low_complexity 1 39 0 1 1309 471 269 10 0 chr11 94997537 94997641 -26846215 - ID_B1 SINE B4 -14 210 106 1 1309 414 57 0 0 chr11 94997983 94998036 -26845820 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1309 353 215 128 90 chr11 94998050 94998183 -26845673 - B1_Mus1 SINE Alu 0 148 11 1 1309 402 302 39 26 chr11 94999520 94999673 -26844183 - MIRb SINE MIR -11 257 103 1 1309 599 166 17 26 chr11 94999695 94999819 -26844037 + B1_Mus1 SINE Alu 4 127 -21 1 1309 1049 140 199 11 chr11 95001430 95001611 -26842245 + B3 SINE B2 2 216 0 1 1309 263 235 0 0 chr11 95002083 95002134 -26841722 - tRNA-Ala-GCY_ tRNA tRNA -18 57 7 2 1309 219 146 0 0 chr11 95004374 95004415 -26839441 + (CCCCCG)n Simple_repeat Simple_repeat 5 45 0 3 1309 195 42 0 0 chr11 95004914 95004938 -26838918 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1309 460 284 11 105 chr11 95008064 95008245 -26835611 + RSINE1 SINE B4 2 165 0 5 1309 22 35 0 0 chr11 95008253 95008282 -26835574 + AT_rich Low_complexity Low_complexity 1 29 0 6 1309 626 122 9 36 chr11 95008453 95008564 -26835292 - B1_Mus2 SINE Alu -1 146 39 7 1309 434 8 130 0 chr11 95008567 95008690 -26835166 + (CCTG)n Simple_repeat Simple_repeat 2 140 0 8 1309 947 175 112 10 chr11 95008987 95009183 -26834673 + B3 SINE B2 1 216 0 9 1309 778 162 54 34 chr11 95009551 95009698 -26834158 - B1_Mur4 SINE Alu 0 150 1 1 1309 186 135 18 55 chr11 95010504 95010559 -26833297 + GA-rich Low_complexity Low_complexity 3 55 0 1 1309 184 30 61 0 chr11 95010674 95010707 -26833149 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1309 301 218 36 173 chr11 95010711 95010728 -26833128 - MT2B LTR ERVL -319 282 214 1 1309 590 146 0 80 chr11 95010728 95010840 -26833016 - B1_Mur2 SINE Alu -35 114 12 1 1309 201 74 0 0 chr11 95012457 95012484 -26831372 + (TTC)n Simple_repeat Simple_repeat 1 27 0 1 1309 279 0 0 0 chr11 95013205 95013236 -26830620 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1309 278 299 6 132 chr11 95013532 95013698 -26830158 - MIR SINE MIR -29 233 89 1 1309 31 26 0 0 chr11 95013894 95013932 -26829924 + AT_rich Low_complexity Low_complexity 1 38 0 1 1309 219 139 65 65 chr11 95014914 95014960 -26828896 + RSINE1 SINE B4 82 127 -38 1 1309 239 316 89 25 chr11 95014988 95015213 -26828643 - MIRb SINE MIR 0 268 20 2 1309 287 270 7 27 chr11 95015315 95015426 -26828430 - ID4_ SINE ID -24 128 16 2 1309 1056 105 122 0 chr11 95015835 95016007 -26827849 + B2_Mm2 SINE B2 1 193 -2 2 1309 449 247 0 0 chr11 95016189 95016278 -26827578 - PB1D10 SINE Alu 0 117 29 2 1309 377 281 107 28 chr11 95016697 95016875 -26826981 + MIR SINE MIR 9 195 -67 2 1309 245 239 118 15 chr11 95016984 95017051 -26826805 + PB1D10 SINE Alu 3 76 -41 2 1309 378 191 11 63 chr11 95017051 95017146 -26826710 + B4A SINE B4 1 90 -202 2 1309 278 302 24 57 chr11 95017146 95017174 -26826682 + B3A SINE B2 1 119 -79 2 1309 948 250 0 5 chr11 95017175 95017372 -26826484 + ID_B1 SINE B4 26 221 -3 2 1309 222 180 57 57 chr11 95017325 95017378 -26826478 + PB1D10 SINE Alu 65 117 0 2 1309 373 299 72 52 chr11 95017627 95017823 -26826033 - MIRc SINE MIR -20 248 51 2 1309 324 0 0 0 chr11 95018277 95018313 -26825543 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1309 270 0 0 0 chr11 95018313 95018342 -26825514 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1309 454 270 103 0 chr11 95018362 95018488 -26825368 - RSINE1 SINE B4 -24 141 3 3 1309 359 325 112 30 chr11 95018747 95018944 -26824912 + MIR SINE MIR 2 214 -54 3 1309 811 214 152 0 chr11 95019529 95019753 -26824103 - B4A SINE B4 -2 290 33 3 1309 798 186 0 48 chr11 95020031 95020178 -26823678 - B1_Mus1 SINE Alu -6 142 3 3 1309 745 178 1 0 chr11 95020238 95020373 -26823483 - B1_Mur4 SINE Alu -13 137 1 3 1309 306 258 49 132 chr11 95020373 95020475 -26823381 - MT2B2 LTR ERVL -430 154 70 3 1309 644 254 141 0 chr11 95020570 95020755 -26823101 - B3 SINE B2 -5 211 1 3 1309 227 374 17 9 chr11 95023075 95023191 -26820665 + MIRc SINE MIR 120 236 -32 3 1309 434 237 10 10 chr11 95023542 95023640 -26820216 + PB1D10 SINE Alu 18 115 -2 4 1309 390 312 79 24 chr11 95023898 95024062 -26819794 + MIRb SINE MIR 61 233 -35 4 1309 183 146 0 0 chr11 95024314 95024355 -26819501 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1309 234 354 139 0 chr11 95024636 95024845 -26819011 - MIRb SINE MIR -7 261 24 4 1309 999 130 16 3 chr11 95025624 95025934 -26817922 + (CA)n Simple_repeat Simple_repeat 1 314 0 4 1309 1387 82 11 27 chr11 95026034 95026222 -26817634 + B2_Mm2 SINE B2 1 185 -10 4 1309 185 383 26 9 chr11 95026222 95026327 -26817529 - L2b LINE L2 -274 3101 2995 4 1309 499 311 74 0 chr11 95026331 95026466 -26817390 + RSINE1 SINE B4 2 146 -19 4 1310 215 347 27 0 chr11 95027731 95027806 -26816050 + ID4_ SINE ID 7 83 0 4 1310 218 250 0 0 chr11 95027908 95027948 -26815908 + PB1D7 SINE Alu 70 109 -11 4 1310 182 61 39 39 chr11 95028722 95028773 -26815083 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1310 203 302 0 0 chr11 95028801 95028854 -26815002 + L3 LINE CR1 4328 4380 -109 5 1310 720 276 66 10 chr11 95029785 95029983 -26813873 + ID_B1 SINE B4 8 216 -8 5 1310 644 162 103 0 chr11 95030055 95030172 -26813684 + B3 SINE B2 2 130 -86 5 1310 209 333 71 8 chr11 95030822 95030949 -26812907 + L2b LINE L2 3198 3332 -43 5 1310 294 206 101 14 chr11 95030953 95031022 -26812834 - PB1D7 SINE Alu -15 105 31 5 1310 204 118 18 73 chr11 95031061 95031095 -26812761 + A-rich Low_complexity Low_complexity 4 33 0 5 1310 1229 42 0 0 chr11 95031095 95031238 -26812618 + B1_Mm SINE Alu 5 147 0 5 1310 204 118 18 73 chr11 95031238 95031258 -26812598 + A-rich Low_complexity Low_complexity 34 54 0 5 1310 1294 233 91 53 chr11 95031258 95031675 -26812181 + RCHARR1 DNA MER1_type 65 497 -477 5 1310 7418 91 43 4 chr11 95031678 95032766 -26811090 - Lx3C LINE L1 -195 6781 5651 6 1310 1217 78 39 0 chr11 95032766 95032945 -26810911 + Lx3C LINE L1 6789 6974 -2 6 1310 2884 66 9 110 chr11 95032974 95033225 -26810631 - MTB LTR MaLR 0 400 188 6 1310 1046 86 0 48 chr11 95033225 95033372 -26810484 - B1_Mus1 SINE Alu -8 140 1 6 1310 2884 66 9 110 chr11 95033372 95033565 -26810291 - MTB LTR MaLR -213 187 1 6 1310 974 117 0 7 chr11 95033613 95033751 -26810105 + B1_Mur4 SINE Alu 5 141 -9 6 1310 829 194 7 0 chr11 95033802 95033941 -26809915 + B1_Mur2 SINE Alu 2 141 -8 6 1310 403 250 130 0 chr11 95033951 95034043 -26809813 + B3 SINE B2 13 116 -100 6 1310 377 116 14 28 chr11 95034027 95034098 -26809758 + B1_Mur3 SINE Alu 79 148 -1 6 1310 530 235 26 13 chr11 95034091 95034242 -26809614 + RCHARR1 DNA MER1_type 589 741 -233 5 1310 373 188 38 32 chr11 95034353 95034509 -26809347 - B3 SINE B2 0 216 33 6 1310 372 343 10 0 chr11 95034573 95034672 -26809184 - B3A SINE B2 -29 169 70 6 1310 290 259 26 44 chr11 95034708 95034821 -26809035 - RSINE1 SINE B4 -53 112 2 6 1310 410 206 52 52 chr11 95034821 95034994 -26808862 + RCHARR1 DNA MER1_type 726 898 -76 5 1310 790 226 193 0 chr11 95034998 95035179 -26808677 - B3 SINE B2 0 216 1 7 1310 440 230 30 0 chr11 95035192 95035292 -26808564 - B1_Mm SINE Alu -7 140 38 7 1310 273 225 108 36 chr11 95035227 95035310 -26808546 - MT2B LTR ERVL -344 257 169 7 1310 1234 54 0 0 chr11 95035330 95035477 -26808379 + B1_Mus2 SINE Alu 1 147 0 7 1310 207 0 0 0 chr11 95035477 95035500 -26808356 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1310 697 227 175 6 chr11 95035500 95035677 -26808179 - B3 SINE B2 -9 207 1 7 1310 401 227 61 30 chr11 95035679 95035811 -26808045 + RCHARR1 DNA MER1_type 839 974 0 5 1310 640 209 0 0 chr11 95036684 95036794 -26807062 + PB1D10 SINE Alu 1 110 -7 7 1310 245 128 21 0 chr11 95036794 95036841 -26807015 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 7 1310 419 308 0 24 chr11 95036877 95037000 -26806856 + ID_B1 SINE B4 105 224 0 7 1310 277 229 166 46 chr11 95037000 95037023 -26806833 - YREP_Mm Unknown Unknown -1514 293 130 7 1310 610 230 72 0 chr11 95037034 95037173 -26806683 + B1_Mur1 SINE Alu 1 149 0 8 1310 566 350 0 12 chr11 95037214 95037379 -26806477 + RSINE1 SINE B4 3 165 0 8 1310 911 156 0 33 chr11 95037501 95037653 -26806203 + B1_Mus2 SINE Alu 1 147 0 8 1310 276 345 83 16 chr11 95037765 95038018 -26805838 + Zaphod DNA Tip100 508 777 -3254 8 1310 244 224 20 0 chr11 95038617 95038666 -26805190 + GA-rich Low_complexity Low_complexity 3 52 0 8 1310 419 250 40 0 chr11 95038666 95038766 -26805090 - RSINE1 SINE B4 -60 105 2 8 1310 473 202 11 0 chr11 95038775 95038864 -26804992 - B1_Mur1 SINE Alu -6 143 54 8 1310 403 279 95 8 chr11 95039038 95039176 -26804680 - MLT1A0 LTR MaLR -47 361 169 8 1310 880 90 0 0 chr11 95039243 95039365 -26804491 - B1_Mus2 SINE Alu -3 144 23 8 1310 472 321 8 112 chr11 95039246 95039411 -26804445 - ID_B1 SINE B4 -6 218 80 8 1310 234 0 0 0 chr11 95039411 95039437 -26804419 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9 1310 472 321 8 112 chr11 95039437 95039513 -26804343 - ID SINE ID -145 79 3 8 1310 186 133 0 0 chr11 95039562 95039592 -26804264 + (CAA)n Simple_repeat Simple_repeat 2 31 0 9 1310 1064 211 66 19 chr11 95039595 95039808 -26804048 + ID_B1 SINE B4 1 223 -1 9 1310 287 104 21 0 chr11 95041572 95041620 -26802236 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1310 822 184 207 0 chr11 95042092 95042271 -26801585 + B3 SINE B2 1 216 0 9 1310 313 294 137 29 chr11 95042306 95042481 -26801375 + L1MD3 LINE L1 7776 7969 -26 9 1310 198 209 0 0 chr11 95042776 95042819 -26801037 + CT-rich Low_complexity Low_complexity 3 45 0 9 1310 481 267 49 24 chr11 95042837 95042960 -26800896 - ID_B1 SINE B4 -10 214 89 9 1310 571 259 78 35 chr11 95043002 95043223 -26800633 + MIRc SINE MIR 1 226 -42 9 1310 213 225 69 14 chr11 95044811 95044883 -26798973 + MIR SINE MIR 52 127 -81 9 1310 282 29 0 0 chr11 95046415 95046450 -26797406 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1310 819 270 74 0 chr11 95046544 95046733 -26797123 + ID_B1 SINE B4 2 204 -20 1 1310 194 0 39 0 chr11 95046884 95046910 -26796946 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 1 1310 253 167 37 0 chr11 95047667 95047721 -26796135 + MIRb SINE MIR 110 165 -103 1 1310 320 0 0 24 chr11 95049588 95049629 -26794227 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1310 426 207 84 49 chr11 95049642 95049784 -26794072 + B1F2 SINE Alu 2 148 -1 1 1310 857 218 63 0 chr11 95049791 95049965 -26793891 + B3A SINE B2 1 185 -13 1 1310 198 0 0 0 chr11 95050193 95050215 -26793641 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1310 569 196 28 0 chr11 95050253 95050360 -26793496 + PB1D10 SINE Alu 6 115 -2 1 1310 211 200 0 24 chr11 95050525 95050566 -26793290 + polypyrimidine Low_complexity Low_complexity 3 42 0 1 1310 441 95 0 0 chr11 95050715 95050778 -26793078 + (TTCA)n Simple_repeat Simple_repeat 4 66 0 1 1310 222 197 13 38 chr11 95051778 95051857 -26791999 + GA-rich Low_complexity Low_complexity 2 78 0 1 1310 223 339 113 0 chr11 95051860 95051975 -26791881 + MIRm SINE MIR 2 129 -147 1 1310 210 227 0 0 chr11 95052133 95052177 -26791679 - ID4_ SINE ID -22 61 18 1 1310 204 157 135 19 chr11 95052549 95052601 -26791255 - MIR SINE MIR -108 154 97 1 1310 215 340 148 19 chr11 95053092 95053200 -26790656 - MIR SINE MIR -70 192 71 1 1310 262 286 137 44 chr11 95053368 95053573 -26790283 + L2 LINE L2 2859 3082 -337 1 1310 966 168 0 0 chr11 95053762 95053911 -26789945 - B1_Mur3 SINE Alu 0 149 1 1 1310 582 15 0 0 chr11 95054056 95054123 -26789733 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 1 1310 369 235 19 75 chr11 95054264 95054370 -26789486 - B3A SINE B2 -85 113 14 1 1310 340 209 7 185 chr11 95055135 95055270 -26788586 - PB1D10 SINE Alu 0 117 7 1 1310 182 37 37 0 chr11 95055838 95055865 -26787991 + (GGA)n Simple_repeat Simple_repeat 3 30 0 1 1310 746 285 47 5 chr11 95056375 95056590 -26787266 + ID_B1 SINE B4 1 224 0 1 1310 505 142 40 7 chr11 95056699 95056798 -26787058 - PB1D9 SINE Alu -37 112 20 1 1310 421 231 20 0 chr11 95056848 95056969 -26786887 - PB1D10 SINE Alu -21 128 4 1 1310 218 306 14 14 chr11 95057265 95057338 -26786518 - L2c LINE L2 -18 3369 3297 1 1310 232 333 0 0 chr11 95058680 95058755 -26785101 - MIRm SINE MIR -127 149 75 1 1310 308 200 83 0 chr11 95060473 95060533 -26783323 + B1_Mur4 SINE Alu 17 81 -69 1 1310 240 301 162 42 chr11 95061253 95061395 -26782461 + RSINE1 SINE B4 1 159 -6 1 1310 273 57 0 0 chr11 95061405 95061440 -26782416 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1 1310 183 80 0 0 chr11 95062636 95062661 -26781195 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1310 588 215 54 0 chr11 95062921 95063051 -26780805 - ID_B1 SINE B4 0 224 88 1 1310 243 276 43 87 chr11 95062969 95063084 -26780772 - MT2B2 LTR ERVL -339 245 136 1 1310 21 71 0 0 chr11 95063511 95063553 -26780303 + GC_rich Low_complexity Low_complexity 1 42 0 1 1310 259 312 25 0 chr11 95064043 95064123 -26779733 - PB1D10 SINE Alu 0 117 36 1 1310 414 0 0 0 chr11 95064124 95064170 -26779686 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1310 521 271 117 34 chr11 95064203 95064409 -26779447 - ID_B1 SINE B4 0 224 2 1 1310 324 0 0 0 chr11 95064411 95064447 -26779409 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1310 700 186 31 8 chr11 95064450 95064580 -26779276 - B1_Mus2 SINE Alu -13 134 2 1 1310 359 226 34 109 chr11 95064598 95064717 -26779139 + PB1D7 SINE Alu 6 115 -5 1 1310 946 149 7 0 chr11 95064790 95064931 -26778925 - B1_Mus1 SINE Alu -5 143 2 1 1310 29 28 0 0 chr11 95064961 95064997 -26778859 + AT_rich Low_complexity Low_complexity 1 36 0 1 1310 402 21 0 0 chr11 95065515 95065562 -26778294 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1310 333 0 0 0 chr11 95065562 95065598 -26778258 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1310 197 320 45 76 chr11 95067494 95067626 -26776230 + MIR SINE MIR 102 229 -33 1 1310 669 147 0 0 chr11 95068366 95068522 -26775334 + (TG)n Simple_repeat Simple_repeat 1 156 0 1 1310 705 175 0 0 chr11 95068548 95068976 -26774880 + (TG)n Simple_repeat Simple_repeat 1 428 0 1 1310 774 152 0 0 chr11 95068993 95069170 -26774686 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1310 292 360 69 31 chr11 95069971 95070289 -26773567 - L2 LINE L2 -431 2988 2659 1 1310 460 216 88 0 chr11 95070389 95070491 -26773365 + B1F1 SINE Alu 1 111 -38 1 1310 521 55 0 14 chr11 95071327 95071401 -26772455 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1310 423 0 0 0 chr11 95072320 95072367 -26771489 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1310 228 244 0 0 chr11 95073089 95073134 -26770722 + ID4 SINE ID 17 61 -22 1 1310 414 165 0 0 chr11 95073471 95073550 -26770306 + CT-rich Low_complexity Low_complexity 2 80 0 1 1310 584 226 15 29 chr11 95073660 95073797 -26770059 + ID_B1 SINE B4 84 218 -6 1 1310 615 27 0 0 chr11 95073806 95073879 -26769977 + (GAAA)n Simple_repeat Simple_repeat 4 76 0 1 1310 517 230 26 9 chr11 95074314 95074428 -26769428 + RSINE1 SINE B4 20 135 -30 1 1310 22 35 0 0 chr11 95074441 95074470 -26769386 + AT_rich Low_complexity Low_complexity 1 29 0 1 1310 252 264 0 14 chr11 95074902 95074975 -26768881 + (CATA)n Simple_repeat Simple_repeat 4 75 0 1 1310 339 238 11 35 chr11 95076331 95076418 -26767438 - PB1D10 SINE Alu -32 85 1 1 1310 369 100 79 79 chr11 95077850 95077926 -26765930 - PB1D7 SINE Alu -3 117 42 1 1310 525 201 68 88 chr11 95077950 95078097 -26765759 - B1_Mur3 SINE Alu 0 149 6 1 1310 332 346 0 116 chr11 95078195 95078368 -26765488 + MIRm SINE MIR 33 185 -91 1 1310 236 216 19 19 chr11 95078433 95078485 -26765371 + PB1D10 SINE Alu 30 81 -36 1 1310 224 77 0 71 chr11 95078514 95078570 -26765286 + (GGA)n Simple_repeat Simple_repeat 2 53 0 1 1310 440 242 92 53 chr11 95078577 95078708 -26765148 + ID_B1 SINE B4 80 215 -9 1 1310 898 112 0 0 chr11 95078798 95078932 -26764924 - B1_Mus1 SINE Alu -13 135 2 1 1310 232 189 0 70 chr11 95079029 95079086 -26764770 - B4 SINE B4 0 292 240 1 1310 872 165 20 0 chr11 95079107 95079362 -26764494 + CT-rich Low_complexity Low_complexity 1 259 0 1 1310 471 331 0 26 chr11 95079489 95079641 -26764215 - RSINE1 SINE B4 -15 150 3 1 1310 477 290 0 9 chr11 95079818 95079926 -26763930 - RSINE1 SINE B4 -51 114 8 1 1310 837 227 84 0 chr11 95079921 95080124 -26763732 - B4A SINE B4 -71 221 2 1 1310 198 383 21 11 chr11 95080134 95080229 -26763627 + MIR SINE MIR 102 197 -65 1 1310 444 258 88 95 chr11 95081147 95081190 -26762666 - RSINE1 SINE B4 -18 147 105 1 1310 1220 107 37 16 chr11 95081190 95081380 -26762476 + B2_Mm2 SINE B2 1 194 -1 1 1310 444 258 88 95 chr11 95081380 95081473 -26762383 - RSINE1 SINE B4 -61 104 12 1 1310 324 127 0 0 chr11 95081474 95081529 -26762327 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1310 850 120 0 0 chr11 95081529 95081654 -26762202 - B1_Mur4 SINE Alu -1 149 25 1 1310 818 170 67 0 chr11 95081660 95081795 -26762061 - B1_Mur2 SINE Alu -3 146 3 1 1310 616 279 13 13 chr11 95081795 95081951 -26761905 - ID_B1 SINE B4 -67 157 2 1 1310 28 29 0 0 chr11 95081991 95082026 -26761830 + AT_rich Low_complexity Low_complexity 1 35 0 1 1310 205 278 27 14 chr11 95082537 95082610 -26761246 + MIR3 SINE MIR 107 180 -28 1 1310 866 279 9 14 chr11 95082846 95083057 -26760799 + ID_B1 SINE B4 1 210 -14 1 1310 420 71 0 0 chr11 95083057 95083113 -26760743 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1310 376 350 0 0 chr11 95083140 95083237 -26760619 - PB1D10 SINE Alu -7 110 14 1 1310 689 163 0 16 chr11 95083241 95083366 -26760490 + B1_Mur4 SINE Alu 26 148 -2 1 1310 350 333 37 43 chr11 95083389 95083472 -26760384 + L2a LINE L2 3260 3346 -80 1 1310 216 0 0 0 chr11 95083472 95083496 -26760360 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1310 350 333 37 43 chr11 95083496 95083575 -26760281 + L2a LINE L2 3347 3421 -5 1 1310 258 293 0 0 chr11 95083588 95083646 -26760210 - ID4 SINE ID -24 59 2 1 1310 241 309 15 0 chr11 95086189 95086257 -26757599 + MIRb SINE MIR 130 198 -70 1 1310 315 0 0 0 chr11 95086688 95086723 -26757133 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1310 315 0 0 0 chr11 95087179 95087214 -26756642 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1310 182 315 74 32 chr11 95087251 95087346 -26756510 + L3b LINE CR1 184 282 -200 1 1310 233 128 34 34 chr11 95088035 95088124 -26755732 + T-rich Low_complexity Low_complexity 1 89 0 1 1310 651 132 0 34 chr11 95088124 95088242 -26755614 - B1_Mur3 SINE Alu 0 149 36 1 1310 987 138 0 0 chr11 95088293 95088585 -26755271 + (TG)n Simple_repeat Simple_repeat 1 292 0 1 1310 637 187 30 0 chr11 95089175 95089309 -26754547 - B1_Mur4 SINE Alu 0 150 13 1 1310 312 171 0 172 chr11 95089220 95089319 -26754537 - MT2B LTR ERVL -352 249 168 1 1310 545 164 147 59 chr11 95089378 95089514 -26754342 + B1_Mus1 SINE Alu 1 148 0 1 1310 804 219 23 88 chr11 95089530 95089745 -26754111 - B3 SINE B2 -6 210 10 1 1310 351 0 0 0 chr11 95091146 95091185 -26752671 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1310 722 102 93 16 chr11 95091200 95091329 -26752527 - B2_Mm2 SINE B2 -55 140 2 1 1310 288 77 0 0 chr11 95091330 95091369 -26752487 - B3A SINE B2 -158 40 2 1 1310 1071 120 0 0 chr11 95091405 95091555 -26752301 + B1_Mur4 SINE Alu 1 150 0 1 1310 558 219 24 0 chr11 95091750 95091873 -26751983 - B3 SINE B2 -90 126 1 2 1310 1039 128 6 0 chr11 95091892 95092048 -26751808 + B2_Mm1t SINE B2 2 158 -35 2 1310 320 167 330 9 chr11 95092095 95092204 -26751652 + B2_Mm1t SINE B2 48 191 -2 2 1310 1141 83 0 0 chr11 95092206 95092350 -26751506 + B1_Mm SINE Alu 1 144 -3 2 1310 180 0 0 0 chr11 95092350 95092370 -26751486 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1310 453 250 32 8 chr11 95092386 95092511 -26751345 - B1F SINE Alu -20 129 2 2 1310 261 0 0 0 chr11 95092747 95092776 -26751080 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1310 21 36 0 0 chr11 95093486 95093514 -26750342 + GC_rich Low_complexity Low_complexity 1 28 0 2 1310 209 289 237 0 chr11 95094261 95094358 -26749498 - MIR SINE MIR -112 150 31 2 1310 187 250 81 70 chr11 95094369 95094455 -26749401 + MIRc SINE MIR 10 96 -172 2 1310 494 272 0 0 chr11 95094561 95094675 -26749181 - ID_B1 SINE B4 -1 223 110 2 1310 343 291 110 0 chr11 95094675 95094688 -26749168 - B1F2 SINE Alu -1 148 8 2 1310 1192 81 0 0 chr11 95094716 95094864 -26748992 - B1_Mus1 SINE Alu 0 148 1 2 1310 180 242 0 151 chr11 95094995 95095068 -26748788 - L3b LINE CR1 -171 311 250 2 1310 423 0 0 0 chr11 95095693 95095740 -26748116 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1310 242 347 0 0 chr11 95096390 95096465 -26747391 + B4 SINE B4 71 145 -147 2 1310 796 256 52 5 chr11 95096575 95096787 -26747069 - ID_B1 SINE B4 0 224 3 2 1310 484 263 166 8 chr11 95096853 95097064 -26746792 - MIR SINE MIR -7 255 33 2 1310 356 267 0 0 chr11 95097532 95097618 -26746238 + B1F1 SINE Alu 5 90 -59 2 1310 475 350 23 13 chr11 95098087 95098315 -26745541 - MIR SINE MIR -30 232 4 2 1310 333 298 49 78 chr11 95098428 95098632 -26745224 + MIRb SINE MIR 53 250 -18 2 1310 418 261 33 117 chr11 95099943 95100156 -26743700 + ORR1E LTR MaLR 117 311 -48 2 1310 726 85 83 25 chr11 95100144 95100265 -26743591 + B1_Mus2 SINE Alu 19 146 -1 2 1310 428 248 19 19 chr11 95100425 95100532 -26743324 + ID_B1 SINE B4 92 198 -26 2 1310 310 186 44 20 chr11 95100534 95100616 -26743240 + B1F1 SINE Alu 58 139 -10 2 1310 228 306 0 14 chr11 95100552 95100625 -26743231 + ID_B1 SINE B4 152 223 -1 2 1310 520 291 13 13 chr11 95100638 95100788 -26743068 + RSINE1 SINE B4 13 162 -3 2 1310 456 253 62 38 chr11 95100821 95100981 -26742875 + RSINE1 SINE B4 2 165 0 2 1310 358 193 11 67 chr11 95101375 95101464 -26742392 - PB1D10 SINE Alu -12 105 22 2 1310 213 182 0 0 chr11 95102368 95102401 -26741455 + polypyrimidine Low_complexity Low_complexity 1 33 0 2 1310 198 0 0 0 chr11 95102401 95102423 -26741433 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 1310 688 276 52 5 chr11 95102433 95102626 -26741230 - ID_B1 SINE B4 -21 203 2 2 1310 515 260 6 0 chr11 95104388 95104565 -26739291 + CT-rich Low_complexity Low_complexity 1 178 0 2 1310 480 313 107 34 chr11 95104581 95104786 -26739070 - ID_B1 SINE B4 -3 221 2 2 1310 275 326 35 35 chr11 95104800 95104943 -26738913 + MIRb SINE MIR 125 267 -1 2 1310 1089 83 0 14 chr11 95105579 95105725 -26738131 + B1_Mus1 SINE Alu 3 146 -2 2 1310 448 271 66 52 chr11 95105762 95105898 -26737958 + ID_B1 SINE B4 81 218 -6 2 1310 1255 34 0 0 chr11 95106525 95106671 -26737185 + B1_Mus2 SINE Alu 2 147 0 2 1310 928 188 50 30 chr11 95106679 95106877 -26736979 - B3 SINE B2 0 216 15 2 1310 192 339 35 26 chr11 95107144 95107259 -26736597 + MIRc SINE MIR 34 149 -119 2 1310 762 269 10 36 chr11 95107752 95107945 -26735911 + ID_B1 SINE B4 35 222 -2 2 1310 738 184 0 0 chr11 95108075 95108386 -26735470 + (CA)n Simple_repeat Simple_repeat 1 311 0 2 1310 249 57 0 0 chr11 95108876 95108911 -26734945 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1310 530 265 126 0 chr11 95109321 95109472 -26734384 + ID_B1 SINE B4 1 170 -54 2 1310 747 219 104 27 chr11 95109495 95109657 -26734199 + B3A SINE B2 1 181 -17 2 1310 387 0 0 0 chr11 95109657 95109700 -26734156 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1310 747 219 104 27 chr11 95109700 95109720 -26734136 + B3A SINE B2 182 197 -1 2 1310 511 244 69 0 chr11 95110440 95110571 -26733285 + MIR SINE MIR 119 258 -4 2 1310 734 238 99 14 chr11 95110572 95110781 -26733075 + B4A SINE B4 1 227 -65 2 1310 284 315 101 14 chr11 95110781 95110929 -26732927 + RSINE1 SINE B4 2 162 -3 2 1310 245 185 0 15 chr11 95110937 95111003 -26732853 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1310 251 265 0 0 chr11 95111096 95111145 -26732711 + B1_Mur1 SINE Alu 85 133 -16 2 1310 214 89 43 22 chr11 95111150 95111196 -26732660 + T-rich Low_complexity Low_complexity 2 48 0 2 1310 351 65 0 0 chr11 95111268 95111314 -26732542 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1310 1304 20 0 0 chr11 95112299 95112445 -26731411 + B1_Mus2 SINE Alu 2 147 0 2 1310 231 36 0 0 chr11 95112445 95112473 -26731383 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1310 1282 184 9 23 chr11 95114164 95114381 -26729475 + B3 SINE B2 1 214 -2 2 1310 831 241 43 52 chr11 95114417 95114627 -26729229 - ID_B1 SINE B4 -1 223 16 2 1310 239 0 0 31 chr11 95114646 95114678 -26729178 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1310 852 181 0 27 chr11 95114773 95114921 -26728935 + B1_Mur2 SINE Alu 5 148 -1 2 1310 1101 68 0 64 chr11 95114950 95115107 -26728749 - B1_Mus1 SINE Alu 0 148 2 2 1310 311 113 0 54 chr11 95116048 95116104 -26727752 - ID4_ SINE ID -8 75 23 2 1310 429 277 108 8 chr11 95116239 95116359 -26727497 + RSINE1 SINE B4 3 134 -31 2 1310 295 297 309 24 chr11 95116808 95117015 -26726841 - B4 SINE B4 -22 270 5 2 1310 281 358 0 0 chr11 95117447 95117528 -26726328 + PB1D10 SINE Alu 1 81 -36 2 1310 827 99 73 44 chr11 95117528 95117665 -26726191 + B1_Mur2 SINE Alu 2 142 -7 2 1310 730 250 36 0 chr11 95117665 95117833 -26726023 + B3 SINE B2 38 211 -5 2 1310 1241 21 0 14 chr11 95117867 95118014 -26725842 + B1_Mm SINE Alu 1 145 -2 2 1310 190 216 56 56 chr11 95118341 95118395 -26725461 - MIR SINE MIR -136 72 19 2 1310 261 128 0 0 chr11 95119165 95119212 -26724644 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1310 242 328 63 56 chr11 95119522 95119648 -26724208 + L2b LINE L2 3230 3356 -19 2 1310 237 352 0 0 chr11 95119659 95119730 -26724126 + G-rich Low_complexity Low_complexity 6 76 0 2 1310 214 179 54 8 chr11 95120146 95120204 -26723652 + MIRb SINE MIR 21 84 -192 2 1310 21 71 0 0 chr11 95120463 95120505 -26723351 + GC_rich Low_complexity Low_complexity 1 42 0 2 1310 189 167 0 0 chr11 95121228 95121258 -26722598 - MIRc SINE MIR -125 143 114 2 1310 1130 72 39 0 chr11 95121267 95121420 -26722436 + B2_Mm2 SINE B2 1 159 -36 2 1310 301 251 117 45 chr11 95121870 95121939 -26721917 + MT2B2 LTR ERVL 87 168 -416 2 1310 618 164 73 9 chr11 95121939 95122076 -26721780 + B1_Mur3 SINE Alu 1 148 -1 2 1310 212 178 22 22 chr11 95122172 95122218 -26721638 - MIR SINE MIR -139 123 78 2 1310 544 307 78 0 chr11 95123345 95123498 -26720358 - MIR SINE MIR -10 252 88 2 1310 1206 94 76 0 chr11 95123721 95123892 -26719964 - B2_Mm2 SINE B2 -9 186 3 2 1310 955 229 54 5 chr11 95124132 95124316 -26719540 + ID_B1 SINE B4 1 193 -31 2 1310 187 312 202 18 chr11 95124414 95124475 -26719381 + MIR3 SINE MIR 34 114 -94 2 1310 1262 35 0 0 chr11 95124475 95124620 -26719236 - B1_Mus2 SINE Alu 0 147 3 2 1310 187 312 202 18 chr11 95124620 95124672 -26719184 + MIR3 SINE MIR 115 167 -41 2 1310 22 0 0 0 chr11 95124684 95124706 -26719150 + AT_rich Low_complexity Low_complexity 1 22 0 2 1310 399 289 32 84 chr11 95125932 95126030 -26717826 - B1F1 SINE Alu -2 147 57 2 1310 279 0 0 0 chr11 95126030 95126061 -26717795 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1310 399 289 32 84 chr11 95126061 95126117 -26717739 - B1F1 SINE Alu -93 56 1 2 1310 229 239 61 61 chr11 95126144 95126242 -26717614 - LTR90B LTR LTR -686 110 13 2 1310 289 290 35 71 chr11 95126243 95126384 -26717472 + MIR SINE MIR 104 239 -23 2 1310 568 217 100 0 chr11 95127236 95127356 -26716500 + ID_B1 SINE B4 93 224 0 2 1310 997 237 113 11 chr11 95127356 95127621 -26716235 + B4A SINE B4 1 292 0 2 1310 262 246 9 9 chr11 95127621 95127736 -26716120 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 1310 543 218 63 9 chr11 95128092 95128203 -26715653 + PB1D7 SINE Alu 2 118 -2 2 1310 206 351 0 0 chr11 95128606 95128680 -26715176 + C-rich Low_complexity Low_complexity 5 78 0 2 1310 416 302 137 0 chr11 95128918 95129057 -26714799 - RSINE1 SINE B4 -6 159 2 2 1310 235 228 0 25 chr11 95129610 95129664 -26714192 - MIR SINE MIR -95 113 62 2 1310 196 170 62 21 chr11 95130107 95130155 -26713701 + L2c LINE L2 3320 3369 -18 2 1310 575 183 72 26 chr11 95130420 95130535 -26713321 + RSINE1 SINE B4 4 133 -32 2 1310 2146 127 6 3 chr11 95130658 95130973 -26712883 - ORR1A2 LTR MaLR -11 316 1 2 1310 281 305 232 0 chr11 95131130 95131225 -26712631 + PB1D10 SINE Alu 1 117 0 2 1310 353 285 151 14 chr11 95131243 95131382 -26712474 + RSINE1 SINE B4 6 163 -2 2 1310 1130 85 55 0 chr11 95131429 95131594 -26712262 + B2_Mm2 SINE B2 1 174 -21 2 1310 486 272 8 53 chr11 95131592 95131724 -26712132 + B4 SINE B4 19 144 -148 3 1310 1236 54 0 0 chr11 95132705 95132852 -26711004 - B1_Mm SINE Alu 0 147 1 3 1310 466 157 55 20 chr11 95132857 95132989 -26710867 - B3 SINE B2 0 216 1 3 1310 271 39 62 62 chr11 95134259 95134340 -26709516 + (CATA)n Simple_repeat Simple_repeat 1 81 0 3 1310 254 246 33 0 chr11 95134444 95134505 -26709351 - URR1B DNA MER1_type -120 105 43 3 1310 936 182 0 0 chr11 95138172 95138320 -26705536 + B1_Mur3 SINE Alu 1 148 -1 3 1310 197 86 57 0 chr11 95138343 95138378 -26705478 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 1310 437 181 181 0 chr11 95138504 95138598 -26705258 - B3 SINE B2 -101 115 5 3 1310 273 294 163 0 chr11 95139018 95139110 -26704746 - RSINE1 SINE B4 -51 114 8 3 1310 219 298 131 28 chr11 95139128 95139235 -26704621 - B1F2 SINE Alu -3 146 29 3 1310 1922 113 92 0 chr11 95139391 95139683 -26704173 + ORR1A2 LTR MaLR 1 319 -8 3 1310 220 341 47 0 chr11 95139880 95139965 -26703891 - PB1D7 SINE Alu -31 89 1 3 1310 604 277 170 16 chr11 95139982 95140235 -26703621 + B4A SINE B4 1 292 0 3 1310 1007 166 57 48 chr11 95140267 95140476 -26703380 - B3 SINE B2 -3 213 3 3 1310 1284 71 6 6 chr11 95140491 95140662 -26703194 - B2_Mm2 SINE B2 -19 176 6 3 1310 378 307 63 27 chr11 95140709 95140943 -26702913 + MER82 DNA MER2_type 1 276 -377 3 1310 841 149 175 31 chr11 95140977 95141171 -26702685 - URR1A DNA MER1_type 0 226 5 3 1310 406 218 129 0 chr11 95141171 95141272 -26702584 + RSINE1 SINE B4 21 134 -31 3 1310 201 108 0 0 chr11 95141850 95141887 -26701969 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1310 511 236 57 0 chr11 95142165 95142271 -26701585 + PB1D9 SINE Alu 9 120 0 3 1310 257 341 63 31 chr11 95142493 95142620 -26701236 + B4 SINE B4 68 198 -94 3 1310 551 224 26 0 chr11 95142527 95142643 -26701213 + B1F SINE Alu 15 133 -16 3 1310 571 320 19 25 chr11 95143853 95144010 -26699846 + RSINE1 SINE B4 10 165 0 3 1310 189 0 0 0 chr11 95144074 95144095 -26699761 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 3 1310 1265 63 6 0 chr11 95144095 95144254 -26699602 - B2_Mm2 SINE B2 -34 161 2 3 1310 302 123 0 17 chr11 95145075 95145133 -26698723 + (GAA)n Simple_repeat Simple_repeat 1 57 0 3 1310 729 273 81 15 chr11 95145627 95145824 -26698032 - B3 SINE B2 -5 211 2 3 1310 1409 81 5 41 chr11 95145982 95146176 -26697680 - B2_Mm2 SINE B2 -8 187 1 3 1310 395 267 32 57 chr11 95146214 95146337 -26697519 - ID_B1 SINE B4 -54 170 51 3 1310 21 36 0 0 chr11 95146605 95146633 -26697223 + AT_rich Low_complexity Low_complexity 1 28 0 3 1310 1660 47 0 0 chr11 95146636 95146829 -26697027 + B2_Mm1t SINE B2 1 193 0 3 1310 1217 68 0 0 chr11 95146956 95147103 -26696753 + B1_Mus2 SINE Alu 1 147 0 3 1310 2515 122 78 58 chr11 95147934 95148396 -26695460 + RLTR28B LTR ERVL 11 481 0 3 1310 281 118 0 19 chr11 95148682 95148734 -26695122 + (GGA)n Simple_repeat Simple_repeat 3 53 0 3 1310 1144 62 14 0 chr11 95148841 95148985 -26694871 - B1_Mm SINE Alu 0 147 2 3 1310 242 264 140 98 chr11 95149138 95149281 -26694575 - ID_B1 SINE B4 -143 149 1 3 1310 439 277 87 30 chr11 95149281 95149433 -26694423 + ID_B1 SINE B4 70 227 -65 3 1310 1445 75 21 0 chr11 95149434 95149621 -26694235 + B2_Mm2 SINE B2 2 192 -3 3 1310 1276 27 0 7 chr11 95149685 95149834 -26694022 + B1_Mus1 SINE Alu 1 148 0 3 1310 344 283 21 24 chr11 95149843 95149958 -26693898 - B1F SINE Alu -2 147 1 3 1310 280 128 0 21 chr11 95149968 95150016 -26693840 - PB1 SINE Alu 0 127 81 3 1310 739 192 8 0 chr11 95150278 95150403 -26693453 - B3 SINE B2 -90 126 1 3 1310 419 250 35 35 chr11 95150715 95150860 -26692996 - B1F SINE Alu 0 149 5 3 1310 356 286 45 62 chr11 95151254 95151366 -26692490 - PB1D7 SINE Alu -5 115 6 3 1310 287 240 180 11 chr11 95151388 95151481 -26692375 - B1F SINE Alu -12 108 2 3 1310 287 278 121 65 chr11 95151596 95151704 -26692152 + B1F SINE Alu 5 120 0 3 1310 840 89 152 8 chr11 95151710 95151828 -26692028 + B1_Mur4 SINE Alu 5 141 -9 3 1310 243 0 0 0 chr11 95151828 95151855 -26692001 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1310 182 355 128 6 chr11 95151874 95152030 -26691826 - MIRb SINE MIR -26 242 68 3 1310 237 278 133 76 chr11 95153285 95153390 -26690466 + PB1 SINE Alu 5 115 -12 3 1310 180 0 0 0 chr11 95155716 95155736 -26688120 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 3 1310 200 345 129 0 chr11 95155749 95155865 -26687991 + L2a LINE L2 3294 3424 -2 3 1310 556 157 224 9 chr11 95156154 95156270 -26687586 - B1_Mur1 SINE Alu -8 141 1 3 1310 571 126 0 0 chr11 95156298 95156385 -26687471 + B1_Mur3 SINE Alu 63 149 0 3 1310 1230 81 40 11 chr11 95156576 95156750 -26687106 - B2_Mm2 SINE B2 -16 179 1 3 1310 204 139 28 0 chr11 95156773 95156809 -26687047 + T-rich Low_complexity Low_complexity 3 39 0 3 1310 371 110 0 99 chr11 95156949 95156981 -26686875 - L1Md_A LINE L1 0 6582 6576 3 1310 1273 41 0 0 chr11 95156981 95157128 -26686728 - B1_Mus2 SINE Alu 0 147 1 3 1310 371 110 0 99 chr11 95157128 95157221 -26686635 - L1Md_A LINE L1 -7 6575 6492 3 1310 691 206 8 22 chr11 95157221 95157355 -26686501 - B1_Mus1 SINE Alu -16 132 1 3 1310 852 128 72 82 chr11 95157363 95157439 -26686417 - B2_Mm2 SINE B2 0 195 120 3 1310 1637 42 0 0 chr11 95157439 95157631 -26686225 + B2_Mm1a SINE B2 2 193 0 3 1310 852 128 72 82 chr11 95157631 95157749 -26686107 - B2_Mm2 SINE B2 -76 119 3 3 1310 307 226 0 0 chr11 95157921 95157983 -26685873 - ID4_ SINE ID -14 69 8 3 1310 419 0 0 19 chr11 95158000 95158052 -26685804 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 3 1310 752 133 116 8 chr11 95158052 95158176 -26685680 - B1_Mur4 SINE Alu -7 143 5 3 1310 202 263 0 17 chr11 95158184 95158242 -26685614 + (TTA)n Simple_repeat Simple_repeat 3 59 0 3 1311 23 0 0 0 chr11 95158303 95158326 -26685530 + AT_rich Low_complexity Low_complexity 1 23 0 3 1311 259 305 167 43 chr11 95158650 95158907 -26684949 - B4 SINE B4 -3 289 1 3 1311 355 132 26 13 chr11 95158915 95158992 -26684864 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3 1311 332 296 67 42 chr11 95159049 95159169 -26684687 + RSINE1 SINE B4 43 165 0 3 1311 1161 82 0 0 chr11 95159205 95159352 -26684504 + B1_Mus1 SINE Alu 2 148 0 3 1311 351 65 0 0 chr11 95159352 95159398 -26684458 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1311 408 221 23 0 chr11 95159415 95159501 -26684355 + B1_Mur1 SINE Alu 62 149 0 3 1311 324 273 60 10 chr11 95159856 95159956 -26683900 - PB1D10 SINE Alu -12 105 1 3 1311 1300 79 72 17 chr11 95160206 95160387 -26683469 - B2_Mm1t SINE B2 -1 192 2 3 1311 254 276 105 0 chr11 95160506 95160582 -26683274 + Tigger1 DNA MER2_type 41 124 -2294 3 1311 289 178 202 48 chr11 95160587 95160711 -26683145 + Tigger1 DNA MER2_type 2201 2343 -75 3 1311 1248 48 0 0 chr11 95160781 95160927 -26682929 + B1_Mus2 SINE Alu 2 147 0 3 1311 685 308 11 0 chr11 95161635 95161817 -26682039 - ID_B1 SINE B4 -38 186 3 3 1311 369 265 92 42 chr11 95162182 95162324 -26681532 + B1_Mur3 SINE Alu 1 149 0 3 1311 562 289 55 44 chr11 95162361 95162542 -26681314 + B3 SINE B2 9 191 -25 3 1311 284 217 56 28 chr11 95162555 95162626 -26681230 - B3 SINE B2 -1 215 143 3 1311 532 261 15 0 chr11 95162695 95162825 -26681031 - B1_Mur1 SINE Alu -13 136 5 3 1311 518 319 25 12 chr11 95162825 95162987 -26680869 - B3A SINE B2 0 198 35 3 1311 808 132 16 0 chr11 95163001 95163122 -26680734 + B1_Mus2 SINE Alu 9 131 -16 3 1311 290 102 0 93 chr11 95163130 95163184 -26680672 - B3A SINE B2 -146 52 4 3 1311 231 338 13 26 chr11 95163267 95163343 -26680513 - Charlie8 DNA MER1_type -2165 263 189 3 1311 328 219 55 0 chr11 95163397 95163470 -26680386 + B1_Mur2 SINE Alu 66 142 -7 3 1311 963 200 22 0 chr11 95163491 95163671 -26680185 + B3 SINE B2 8 191 -25 3 1311 301 270 68 0 chr11 95164036 95164110 -26679746 + B1F2 SINE Alu 1 79 -70 3 1311 1301 27 0 0 chr11 95164247 95164394 -26679462 + B1_Mm SINE Alu 1 147 0 3 1311 22 0 0 0 chr11 95164963 95164985 -26678871 + AT_rich Low_complexity Low_complexity 1 22 0 3 1311 548 221 105 15 chr11 95165042 95165175 -26678681 - B1_Mus2 SINE Alu 0 147 3 3 1311 688 132 0 28 chr11 95165312 95165421 -26678435 - B3 SINE B2 -110 106 1 3 1311 590 118 176 0 chr11 95165971 95166073 -26677783 - PB1D9 SINE Alu 0 120 1 3 1311 367 76 61 0 chr11 95166117 95166183 -26677673 + (CATA)n Simple_repeat Simple_repeat 3 72 0 3 1311 715 186 42 28 chr11 95166211 95166355 -26677501 - B1_Mur1 SINE Alu -2 147 2 3 1311 1152 179 13 67 chr11 95166874 95167036 -26676820 + URR1A DNA MER1_type 1 158 -68 3 1311 473 91 382 83 chr11 95167036 95167180 -26676676 + B2_Mm2 SINE B2 1 187 -8 3 1311 1136 190 0 78 chr11 95167180 95167262 -26676594 + URR1A DNA MER1_type 146 226 0 3 1311 560 267 24 55 chr11 95167898 95168106 -26675750 + B3A SINE B2 13 216 0 3 1311 41 0 0 0 chr11 95168199 95168240 -26675616 + AT_rich Low_complexity Low_complexity 1 41 0 3 1311 600 129 145 8 chr11 95168240 95168357 -26675499 + B1_Mur3 SINE Alu 1 133 -16 3 1311 762 161 17 0 chr11 95168384 95168502 -26675354 + B3 SINE B2 1 120 -96 4 1311 1430 29 6 0 chr11 95168502 95168676 -26675180 - B2_Mm1t SINE B2 -1 192 18 4 1311 632 273 47 52 chr11 95168822 95169015 -26674841 - B3A SINE B2 -6 192 1 4 1311 744 243 0 7 chr11 95169524 95169673 -26674183 - B1F1 SINE Alu 0 149 2 4 1311 302 230 125 39 chr11 95169693 95169797 -26674059 - PB1D9 SINE Alu -5 115 3 4 1311 994 123 92 6 chr11 95169917 95170081 -26673775 + B2_Mm1t SINE B2 2 179 -14 4 1311 489 75 327 27 chr11 95170094 95170204 -26673652 + B2_Mm2 SINE B2 47 189 -6 4 1311 253 197 197 0 chr11 95172478 95172544 -26671312 + 4.5SRNA scRNA scRNA 8 86 -8 4 1311 325 183 64 55 chr11 95172496 95172583 -26671273 + B1_Mur1 SINE Alu 47 148 -1 4 1311 233 275 97 42 chr11 95172526 95172598 -26671258 + B4A SINE B4 163 238 -54 4 1311 180 0 0 0 chr11 95172715 95172735 -26671121 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1311 461 237 16 56 chr11 95172767 95172892 -26670964 - RSINE1 SINE B4 -44 121 2 4 1311 273 261 187 33 chr11 95173325 95173416 -26670440 + ID_B1 SINE B4 90 194 -30 4 1311 233 339 72 47 chr11 95173621 95173696 -26670160 + MIRb SINE MIR 28 106 -162 4 1311 1579 37 5 5 chr11 95173696 95173886 -26669970 - B2_Mm1a SINE B2 -3 190 1 4 1311 233 339 72 47 chr11 95173886 95174045 -26669811 + MIRb SINE MIR 107 268 0 4 1311 234 336 157 34 chr11 95174378 95174735 -26669121 - L2 LINE L2 -342 3077 2677 4 1311 739 179 55 60 chr11 95174841 95175047 -26668809 + B3 SINE B2 2 195 0 4 1311 1073 72 36 0 chr11 95175385 95175523 -26668333 + B1_Mus1 SINE Alu 1 143 -5 4 1311 274 31 0 0 chr11 95175524 95175556 -26668300 + (AGGGGG)n Simple_repeat Simple_repeat 5 36 0 4 1311 699 75 0 0 chr11 95175556 95175650 -26668206 + (GAA)n Simple_repeat Simple_repeat 3 96 0 4 1311 839 141 104 0 chr11 95176171 95176306 -26667550 + B1_Mur4 SINE Alu 2 150 0 4 1311 354 280 40 10 chr11 95176333 95176434 -26667422 + B1_Mur2 SINE Alu 1 104 -45 4 1311 547 202 68 23 chr11 95176472 95176604 -26667252 + B1_Mur1 SINE Alu 12 149 0 4 1311 219 315 0 27 chr11 95177333 95177408 -26666448 - L2b LINE L2 -1 3374 3302 4 1311 912 206 88 21 chr11 95177623 95177816 -26666040 - B3 SINE B2 -9 207 2 4 1311 715 259 177 8 chr11 95177827 95178069 -26665787 + MTD LTR MaLR 126 401 -18 4 1311 283 96 357 28 chr11 95178230 95178342 -26665514 - B2_Mm2 SINE B2 0 195 47 4 1311 1460 45 23 0 chr11 95178408 95178585 -26665271 - B2_Mm2 SINE B2 -13 182 2 4 1311 581 272 231 11 chr11 95178735 95178917 -26664939 - ID_B1 SINE B4 -2 222 1 4 1311 372 94 0 0 chr11 95178961 95179014 -26664842 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1311 1164 118 6 12 chr11 95179068 95179240 -26664616 - B2_Mm1t SINE B2 -8 185 15 4 1311 223 67 0 0 chr11 95179262 95179292 -26664564 - B1_Mur4 SINE Alu -120 30 1 4 1311 246 264 110 14 chr11 95179615 95179688 -26664168 + BC1_Mm scRNA scRNA 8 87 -65 4 1311 1147 62 14 0 chr11 95179846 95179991 -26663865 + B1_Mus1 SINE Alu 1 147 -1 4 1311 836 138 0 0 chr11 95180005 95180128 -26663728 + B1_Mur3 SINE Alu 21 143 -6 4 1311 499 288 104 55 chr11 95180469 95180671 -26663185 - B3 SINE B2 -2 214 3 4 1311 286 243 0 39 chr11 95180728 95180805 -26663051 - ID4_ SINE ID -9 74 1 4 1311 427 278 34 34 chr11 95180822 95180971 -26662885 - ID_B1 SINE B4 0 224 76 4 1311 465 137 25 25 chr11 95181182 95181302 -26662554 + (TA)n Simple_repeat Simple_repeat 2 121 0 4 1311 2981 61 10 53 chr11 95181689 95182107 -26661749 - MTA_Mm LTR MaLR 0 400 1 4 1311 7488 77 26 70 chr11 95182107 95183256 -26660600 - MTA_Mm-int LTR MaLR 0 1098 1 4 1311 3295 61 0 2 chr11 95183256 95183653 -26660203 - MTA_Mm LTR MaLR 0 396 1 4 1311 434 336 90 72 chr11 95183761 95184194 -26659662 + L2c LINE L2 2923 3363 -24 4 1311 880 262 20 10 chr11 95184405 95184609 -26659247 + B3 SINE B2 8 213 -3 4 1311 1611 47 0 0 chr11 95184628 95184819 -26659037 + B2_Mm1a SINE B2 2 192 -1 4 1311 1259 34 0 0 chr11 95184820 95184966 -26658890 + B1_Mus2 SINE Alu 2 147 0 4 1311 222 37 0 0 chr11 95185200 95185227 -26658629 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1311 821 82 9 0 chr11 95186548 95186658 -26657198 - B1_Mur4 SINE Alu -9 141 31 4 1311 215 346 68 89 chr11 95187244 95187390 -26656466 + MIRb SINE MIR 74 216 -52 4 1311 229 266 0 122 chr11 95188153 95188243 -26655613 + Arthur1A DNA Tip100 57 135 -42 4 1311 403 257 174 45 chr11 95188272 95188427 -26655429 + B4A SINE B4 1 175 -117 4 1311 189 0 0 0 chr11 95188507 95188528 -26655328 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1311 237 271 0 0 chr11 95188540 95188588 -26655268 + ID4 SINE ID 2 49 -34 4 1311 333 68 0 0 chr11 95188826 95188870 -26654986 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1311 654 209 0 0 chr11 95189106 95189216 -26654640 + B1_Mur1 SINE Alu 40 149 0 4 1311 1430 45 39 0 chr11 95189279 95189458 -26654398 - B2_Mm1a SINE B2 -6 187 2 4 1311 1199 68 0 0 chr11 95189461 95189607 -26654249 - B1_Mus2 SINE Alu -1 146 1 4 1311 705 224 0 95 chr11 95189617 95189775 -26654081 - B1_Mur1 SINE Alu 0 149 7 4 1311 258 32 0 0 chr11 95190315 95190346 -26653510 + (TCCTG)n Simple_repeat Simple_repeat 2 32 0 4 1311 555 169 0 0 chr11 95190349 95190438 -26653418 - B1_Mur3 SINE Alu -60 89 1 4 1311 296 256 0 109 chr11 95190353 95190454 -26653402 - MT2B2 LTR ERVL -344 240 151 4 1311 913 223 10 31 chr11 95190467 95190661 -26653195 - B3A SINE B2 -5 193 4 4 1311 430 310 35 0 chr11 95190735 95190851 -26653005 - RSINE1 SINE B4 -43 122 3 4 1311 1192 68 0 0 chr11 95190971 95191118 -26652738 - B1_Mus1 SINE Alu 0 148 2 4 1311 568 223 0 35 chr11 95191164 95191280 -26652576 + B3A SINE B2 1 112 -86 4 1311 324 296 53 53 chr11 95191280 95191296 -26652560 + RSINE1 SINE B4 2 133 -32 4 1311 474 18 0 0 chr11 95191297 95191352 -26652504 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1311 604 165 43 0 chr11 95191398 95191513 -26652343 + PB1D9 SINE Alu 1 120 0 4 1311 601 306 48 31 chr11 95191625 95191940 -26651916 - L1MB7 LINE L1 -1655 6130 5814 4 1311 658 156 28 0 chr11 95191998 95192107 -26651749 + B1_Mus2 SINE Alu 35 146 -1 4 1311 1316 93 0 63 chr11 95192114 95192320 -26651536 + B2_Mm2 SINE B2 3 195 0 4 1311 1456 44 50 0 chr11 95192354 95192535 -26651321 + B2_Mm2 SINE B2 1 190 -5 4 1311 241 192 204 42 chr11 95192547 95192664 -26651192 + MIR SINE MIR 19 149 -119 4 1311 876 161 0 20 chr11 95192732 95192884 -26650972 - B1_Mur3 SINE Alu 0 149 1 4 1311 386 317 11 12 chr11 95192887 95193018 -26650838 - ID4 SINE ID -23 129 2 4 1311 302 266 0 0 chr11 95193030 95193094 -26650762 - B1F SINE Alu -6 143 80 4 1311 422 291 44 7 chr11 95193950 95194085 -26649771 + B1F1 SINE Alu 3 142 -7 4 1311 261 83 0 0 chr11 95194195 95194231 -26649625 + (TTG)n Simple_repeat Simple_repeat 2 37 0 4 1311 1058 135 0 4 chr11 95194244 95194490 -26649366 + (TTTC)n Simple_repeat Simple_repeat 1 244 0 4 1311 692 256 102 32 chr11 95194490 95194676 -26649180 - ID_B1 SINE B4 -16 208 10 4 1311 602 204 69 44 chr11 95194823 95194982 -26648874 - RSINE1 SINE B4 0 165 3 4 1311 1312 14 0 0 chr11 95195537 95195684 -26648172 + B1_Mm SINE Alu 1 147 0 4 1311 294 298 181 30 chr11 95196087 95196253 -26647603 + MIRc SINE MIR 61 251 -17 4 1311 251 339 49 16 chr11 95196387 95196510 -26647346 + MIRb SINE MIR 139 265 -3 4 1311 251 292 0 0 chr11 95196649 95196714 -26647142 - ID4_ SINE ID -16 67 3 4 1311 216 97 0 0 chr11 95198112 95198143 -26645713 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1311 21 36 0 0 chr11 95198419 95198447 -26645409 + GC_rich Low_complexity Low_complexity 1 28 0 4 1311 234 251 96 76 chr11 95200703 95200854 -26643002 + MIRm SINE MIR 53 230 -32 4 1311 21 0 0 0 chr11 95201302 95201323 -26642533 + AT_rich Low_complexity Low_complexity 1 21 0 4 1311 207 0 0 0 chr11 95201452 95201475 -26642381 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1311 396 218 26 0 chr11 95201636 95201714 -26642142 - ID4_ SINE ID -3 80 1 4 1311 667 234 42 7 chr11 95201816 95201958 -26641898 + MER58A DNA MER1_type 1 147 -77 4 1311 1307 254 118 0 chr11 95203706 95204037 -26639819 - MTE2b LTR MaLR -7 372 3 4 1311 372 215 42 0 chr11 95205416 95205497 -26638359 + ID4 SINE ID 8 91 -61 4 1311 240 275 25 12 chr11 95206550 95206631 -26637225 + CT-rich Low_complexity Low_complexity 1 82 0 4 1311 208 278 162 14 chr11 95207149 95207225 -26636631 - MIR SINE MIR -58 150 63 4 1311 21 71 0 0 chr11 95208176 95208218 -26635638 + AT_rich Low_complexity Low_complexity 1 42 0 4 1311 689 226 45 59 chr11 95208293 95208514 -26635342 + B4A SINE B4 2 219 -73 4 1311 644 201 57 7 chr11 95208522 95208662 -26635194 + RSINE1 SINE B4 3 149 -16 4 1311 255 302 9 86 chr11 95208714 95208819 -26635037 + MT2B LTR ERVL 155 251 -350 4 1311 484 261 18 0 chr11 95208729 95208840 -26635016 + PB1D9 SINE Alu 7 119 -1 4 1311 252 0 0 0 chr11 95209151 95209179 -26634677 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1311 1220 61 0 0 chr11 95209228 95209376 -26634480 + B1_Mus1 SINE Alu 1 148 0 5 1311 184 300 20 0 chr11 95209608 95209658 -26634198 - MIR SINE MIR -107 155 105 5 1311 246 125 0 0 chr11 95209959 95210007 -26633849 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1311 1075 82 7 27 chr11 95210008 95210158 -26633698 - B1_Mus1 SINE Alu -1 147 1 5 1311 263 352 19 9 chr11 95210622 95210728 -26633128 - PB1D10 SINE Alu -10 107 1 5 1311 687 246 40 65 chr11 95210770 95210970 -26632886 + B3A SINE B2 3 197 -1 5 1311 426 205 13 0 chr11 95212133 95212211 -26631645 - ID4 SINE ID 0 83 5 5 1311 774 109 42 0 chr11 95212857 95212976 -26630880 + B1_Mus1 SINE Alu 25 148 0 5 1311 216 158 0 0 chr11 95213532 95213570 -26630286 + CT-rich Low_complexity Low_complexity 2 39 0 5 1311 668 243 90 47 chr11 95213574 95213807 -26630049 - B4A SINE B4 -46 246 4 5 1311 461 213 150 41 chr11 95213848 95213995 -26629861 - RSINE1 SINE B4 0 165 3 5 1311 609 155 10 10 chr11 95214141 95214245 -26629611 + B1_Mus1 SINE Alu 40 143 -5 5 1311 398 238 36 0 chr11 95214297 95214392 -26629464 + PB1D9 SINE Alu 23 125 -2 5 1311 232 292 105 31 chr11 95214558 95214749 -26629107 - L1MC4 LINE L1 -660 7382 7178 5 1311 605 117 0 91 chr11 95215069 95215201 -26628655 - L1Md_F2 LINE L1 -1 6581 6462 5 1311 483 243 9 0 chr11 95218634 95218745 -26625111 - PB1D10 SINE Alu 0 117 6 5 1311 379 268 28 7 chr11 95218845 95218988 -26624868 + B1F SINE Alu 2 147 -2 5 1311 424 174 0 0 chr11 95218997 95219066 -26624790 + ID4_ SINE ID 2 70 -13 5 1311 189 0 0 0 chr11 95219515 95219536 -26624320 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1311 203 133 0 0 chr11 95220338 95220368 -26623488 + (CACG)n Simple_repeat Simple_repeat 1 30 0 5 1311 218 194 0 0 chr11 95221670 95221706 -26622150 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1311 514 239 29 81 chr11 95221708 95221881 -26621975 - RSINE1 SINE B4 0 165 2 5 1311 366 250 54 0 chr11 95221954 95222046 -26621810 + PB1D10 SINE Alu 2 98 -19 5 1311 351 125 219 24 chr11 95222087 95222169 -26621687 + B1_Mus2 SINE Alu 49 146 -1 5 1311 223 216 39 0 chr11 95222183 95222234 -26621622 + B1F SINE Alu 97 149 0 5 1311 189 0 0 0 chr11 95222342 95222363 -26621493 + (CACCAT)n Simple_repeat Simple_repeat 6 26 0 5 1311 616 105 32 0 chr11 95222365 95222460 -26621396 - B1_Mus2 SINE Alu -14 133 36 5 1311 203 0 37 0 chr11 95222473 95222500 -26621356 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1311 355 303 25 92 chr11 95222517 95222575 -26621281 + L1ME4a LINE L1 5935 5989 -135 5 1311 610 202 108 0 chr11 95222575 95222704 -26621152 - B1_Mus2 SINE Alu 0 147 5 5 1311 355 303 25 92 chr11 95222704 95222841 -26621015 + L1ME4a LINE L1 5990 6117 -7 5 1311 1187 76 13 0 chr11 95222935 95223093 -26620763 + B2_Mm2 SINE B2 3 162 -33 5 1311 24 0 0 0 chr11 95223230 95223254 -26620602 + AT_rich Low_complexity Low_complexity 1 24 0 5 1311 676 143 235 0 chr11 95223366 95223485 -26620371 + B1_Mus1 SINE Alu 2 148 0 5 1311 984 103 73 0 chr11 95223492 95223628 -26620228 + B1_Mus1 SINE Alu 3 148 0 5 1311 472 254 83 49 chr11 95223665 95223930 -26619926 - L1MB5 LINE L1 -25 6149 5876 5 1311 312 268 0 0 chr11 95223942 95224024 -26619832 - L1MB5 LINE L1 -442 5741 5660 5 1311 180 111 0 0 chr11 95224030 95224057 -26619799 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1311 328 228 0 11 chr11 95224057 95224151 -26619705 - L1MB5 LINE L1 -513 5665 5577 5 1311 530 237 76 0 chr11 95224653 95224784 -26619072 + B1F1 SINE Alu 2 142 -7 5 1311 246 148 0 0 chr11 95227593 95227647 -26616209 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 5 1311 299 247 0 115 chr11 95227665 95227752 -26616104 - ID4 SINE ID -5 78 2 5 1311 380 231 13 0 chr11 95228388 95228466 -26615390 - ID4 SINE ID -1 82 4 5 1311 188 35 35 0 chr11 95229251 95229280 -26614576 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 5 1311 360 0 0 0 chr11 95229557 95229597 -26614259 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1311 440 143 43 0 chr11 95232250 95232320 -26611536 + ID4 SINE ID 2 74 -9 5 1311 1261 42 0 0 chr11 95232345 95232489 -26611367 + B1_Mm SINE Alu 1 144 -3 5 1311 198 0 0 0 chr11 95232489 95232511 -26611345 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1311 324 0 0 0 chr11 95232895 95232931 -26610925 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1311 1342 7 0 0 chr11 95232931 95233078 -26610778 - B1_Mm SINE Alu 0 147 1 5 1311 276 200 14 14 chr11 95233823 95233894 -26609962 + ID4_ SINE ID 2 72 -11 5 1311 885 185 130 5 chr11 95233921 95234106 -26609750 + B3 SINE B2 3 210 -6 5 1311 930 136 57 0 chr11 95234142 95234282 -26609574 + B1_Mus1 SINE Alu 1 148 0 5 1311 180 111 0 0 chr11 95234288 95234315 -26609541 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1311 309 211 52 62 chr11 95234522 95234618 -26609238 - PB1D10 SINE Alu -14 103 9 5 1311 464 241 8 17 chr11 95234805 95234923 -26608933 + PB1D10 SINE Alu 1 117 0 5 1311 739 261 32 25 chr11 95234940 95235097 -26608759 + B3A SINE B2 4 161 -37 5 1311 498 33 0 0 chr11 95235100 95235160 -26608696 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1311 1093 232 5 31 chr11 95235195 95235417 -26608439 - B3 SINE B2 0 216 1 5 1311 1381 89 15 45 chr11 95235445 95235646 -26608210 + B2_Mm2 SINE B2 1 195 0 5 1311 670 204 7 72 chr11 95235668 95235821 -26608035 - B1_Mur1 SINE Alu -6 143 1 5 1311 982 137 214 0 chr11 95235909 95236091 -26607765 - URR1A DNA MER1_type -5 221 1 5 1311 902 325 69 3 chr11 95237311 95237657 -26606199 - MTE2b LTR MaLR -10 369 1 5 1311 198 0 0 0 chr11 95237955 95237977 -26605879 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 5 1311 1158 59 0 0 chr11 95237977 95238113 -26605743 - B1_Mus1 SINE Alu -12 136 1 5 1311 443 201 56 137 chr11 95238142 95238303 -26605553 - B1_Mur2 SINE Alu -1 148 1 5 1311 330 247 13 27 chr11 95239922 95239997 -26603859 - ID4 SINE ID -3 80 7 5 1311 180 0 0 0 chr11 95240309 95240329 -26603527 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 5 1311 482 312 0 113 chr11 95241561 95241738 -26602118 + MER20 DNA MER1_type 57 213 -6 5 1311 1520 22 43 5 chr11 95243942 95244127 -26599729 + B2_Mm1a SINE B2 2 193 0 5 1311 770 110 95 75 chr11 95244330 95244477 -26599379 + B1_Mur4 SINE Alu 1 150 0 5 1311 250 330 56 56 chr11 95244478 95244603 -26599253 - MIR SINE MIR -126 136 12 5 1311 285 0 21 43 chr11 95244985 95245032 -26598824 + (GTGTG)n Simple_repeat Simple_repeat 1 46 0 5 1311 1204 48 7 0 chr11 95245092 95245239 -26598617 + B1_Mus1 SINE Alu 1 148 0 5 1311 383 258 52 41 chr11 95245258 95245355 -26598501 + ID_B1 SINE B4 114 211 -13 5 1311 452 288 30 48 chr11 95245438 95245606 -26598250 - MIRc SINE MIR -1 267 103 5 1311 922 203 21 73 chr11 95248042 95248276 -26595580 + ID_B1 SINE B4 3 224 0 5 1311 410 292 160 17 chr11 95249587 95249768 -26594088 - MIRb SINE MIR -35 233 27 5 1311 651 185 9 0 chr11 95249808 95249916 -26593940 - PB1D9 SINE Alu -8 112 4 5 1311 1198 48 7 0 chr11 95250127 95250273 -26593583 - B1_Mus2 SINE Alu 0 147 1 5 1311 280 283 67 48 chr11 95250889 95250993 -26592863 + Charlie17a DNA MER1_type 22 127 -92 5 1311 1213 75 98 0 chr11 95251064 95251237 -26592619 - B2_Mm2 SINE B2 -4 191 2 5 1311 250 59 78 0 chr11 95252213 95252264 -26591592 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 5 1311 759 129 0 0 chr11 95252324 95252456 -26591400 + (TG)n Simple_repeat Simple_repeat 2 133 0 5 1311 533 235 128 8 chr11 95252548 95252681 -26591175 + B1_Mur2 SINE Alu 1 149 0 5 1311 25 0 0 0 chr11 95252959 95252984 -26590872 + AT_rich Low_complexity Low_complexity 1 25 0 5 1311 234 0 0 0 chr11 95253112 95253138 -26590718 + (GGCTG)n Simple_repeat Simple_repeat 4 29 0 5 1311 263 112 54 43 chr11 95256087 95256180 -26587676 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 1311 283 284 63 74 chr11 95256196 95256291 -26587565 - ID_B1 SINE B4 -1 223 130 5 1311 752 266 31 41 chr11 95256292 95256488 -26587368 + B3A SINE B2 1 194 -4 5 1311 252 279 29 14 chr11 95256488 95256557 -26587299 - B1F2 SINE Alu -78 71 2 5 1311 317 302 132 0 chr11 95256699 95256805 -26587051 + PB1 SINE Alu 6 125 -2 5 1311 570 257 9 0 chr11 95256834 95256947 -26586909 + ID_B1 SINE B4 83 196 -28 5 1311 343 121 134 15 chr11 95256948 95257015 -26586841 + ID_B1 SINE B4 142 216 -8 5 1311 884 249 24 28 chr11 95257038 95257249 -26586607 + ID_B1 SINE B4 4 213 -11 5 1311 246 164 400 0 chr11 95257278 95257333 -26586523 + ID4_ SINE ID 5 81 -2 5 1311 236 263 84 112 chr11 95257399 95257506 -26586350 + MT2B LTR ERVL 158 261 -340 5 1311 450 222 91 18 chr11 95257410 95257520 -26586336 + PB1 SINE Alu 7 124 -3 5 1311 274 273 12 49 chr11 95257530 95257611 -26586245 + ID2 SINE ID 3 80 -3 5 1311 207 175 0 0 chr11 95258482 95258539 -26585317 + GA-rich Low_complexity Low_complexity 1 57 0 5 1311 741 144 0 18 chr11 95258640 95258753 -26585103 + PB1D9 SINE Alu 1 111 -9 5 1311 918 67 0 0 chr11 95258753 95258888 -26584968 + (CA)n Simple_repeat Simple_repeat 2 136 0 5 1311 378 247 41 41 chr11 95259056 95259153 -26584703 + MER53 DNA hAT 2 98 -95 5 1311 1039 230 23 9 chr11 95260205 95260424 -26583432 + ID_B1 SINE B4 3 224 0 6 1311 1289 246 25 7 chr11 95262162 95262440 -26581416 - B4 SINE B4 -6 286 4 6 1311 862 239 24 5 chr11 95262461 95262667 -26581189 - B3 SINE B2 -6 210 1 6 1311 414 315 0 0 chr11 95262690 95262782 -26581074 - PB1D10 SINE Alu -21 96 5 6 1311 318 367 25 8 chr11 95262692 95262813 -26581043 - ID_B1 SINE B4 -49 175 53 6 1311 244 290 37 9 chr11 95262854 95262913 -26580943 + polypyrimidine Low_complexity Low_complexity 50 112 0 6 1311 1014 260 9 0 chr11 95262913 95263132 -26580724 - ID_B1 SINE B4 -1 223 3 6 1311 244 290 37 9 chr11 95263132 95263180 -26580676 + polypyrimidine Low_complexity Low_complexity 3 49 0 6 1311 510 274 0 0 chr11 95263188 95263283 -26580573 - PB1D10 SINE Alu -13 104 10 6 1311 297 0 0 0 chr11 95263952 95263985 -26579871 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1311 209 33 0 32 chr11 95264394 95264425 -26579431 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 6 1311 24 32 0 0 chr11 95264625 95264656 -26579200 + AT_rich Low_complexity Low_complexity 1 31 0 6 1311 366 23 0 0 chr11 95264656 95264699 -26579157 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1311 243 0 0 0 chr11 95264699 95264725 -26579131 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1311 706 257 0 40 chr11 95264731 95264881 -26578975 - RSINE1 SINE B4 -19 146 3 6 1311 325 325 28 87 chr11 95264989 95265242 -26578614 - L2 LINE L2 -420 2999 2762 6 1311 1216 80 85 6 chr11 95265749 95265925 -26577931 + B2_Mm2 SINE B2 1 190 -5 6 1311 432 55 0 0 chr11 95266066 95266121 -26577735 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1311 412 208 94 0 chr11 95266214 95266310 -26577546 - MTD LTR MaLR 0 419 315 6 1311 477 211 0 21 chr11 95266290 95266387 -26577469 - MTC-int LTR MaLR -1162 96 2 6 1311 938 150 7 33 chr11 95266426 95266578 -26577278 + B1_Mur3 SINE Alu 2 149 0 6 1311 234 91 0 0 chr11 95266578 95266611 -26577245 + (CAAGA)n Simple_repeat Simple_repeat 1 33 0 6 1311 1798 171 29 82 chr11 95266611 95266809 -26577047 - MTD LTR MaLR -27 392 211 6 1311 1212 50 0 0 chr11 95266809 95266949 -26576907 - B1_Mm SINE Alu -7 140 1 6 1311 1798 171 29 82 chr11 95266949 95267053 -26576803 - MTD LTR MaLR -209 210 115 6 1311 225 0 0 0 chr11 95267053 95267078 -26576778 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1311 1798 171 29 82 chr11 95267078 95267188 -26576668 - MTD LTR MaLR -305 114 2 6 1311 215 323 104 67 chr11 95267243 95267518 -26576338 - L2b LINE L2 -36 3390 3136 6 1311 225 283 31 42 chr11 95267536 95267632 -26576224 - L2b LINE L2 -307 3068 2974 6 1311 498 304 21 97 chr11 95267734 95267920 -26575936 - B3A SINE B2 0 198 27 6 1311 1137 83 0 0 chr11 95267938 95268082 -26575774 - B1_Mm SINE Alu 0 147 4 6 1311 524 275 8 0 chr11 95268149 95268280 -26575576 - ID_B1 SINE B4 -2 222 91 6 1311 276 274 55 0 chr11 95268215 95268288 -26575568 - PB1D9 SINE Alu -42 78 2 6 1311 930 90 242 6 chr11 95268426 95268583 -26575273 - B2_Mm2 SINE B2 0 195 2 6 1311 271 262 191 27 chr11 95268588 95268698 -26575158 + B1_Mur1 SINE Alu 18 145 -4 6 1311 296 304 114 7 chr11 95268714 95268863 -26574993 - L2b LINE L2 -672 2747 2583 6 1311 243 0 0 0 chr11 95269199 95269226 -26574630 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1311 848 178 0 0 chr11 95269454 95269589 -26574267 + B1_Mur1 SINE Alu 2 136 -13 6 1311 354 45 0 0 chr11 95269589 95269633 -26574223 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1311 511 196 82 0 chr11 95269753 95269850 -26574006 - B1_Mur1 SINE Alu -3 146 42 6 1311 895 168 0 7 chr11 95269975 95270119 -26573737 - B1F SINE Alu -6 143 1 6 1311 182 37 0 36 chr11 95270681 95270709 -26573147 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 6 1311 228 337 84 60 chr11 95270731 95270946 -26572910 + MLT1N2 LTR MaLR 333 552 -10 6 1311 1244 27 0 14 chr11 95271044 95271192 -26572664 - B1_Mus2 SINE Alu 0 147 2 6 1311 1172 151 0 5 chr11 95271557 95271744 -26572112 - B2_Mm2 SINE B2 -2 193 8 6 1311 222 98 39 19 chr11 95271862 95271914 -26571942 + T-rich Low_complexity Low_complexity 4 56 0 6 1311 22 0 0 0 chr11 95272233 95272255 -26571601 + GC_rich Low_complexity Low_complexity 1 22 0 6 1311 216 158 0 0 chr11 95273336 95273374 -26570482 + CT-rich Low_complexity Low_complexity 2 39 0 6 1311 249 320 119 67 chr11 95273642 95273681 -26570175 + B4 SINE B4 49 187 -103 6 1311 342 333 11 0 chr11 95273681 95273774 -26570082 + PB1D10 SINE Alu 2 95 -22 6 1311 432 0 0 0 chr11 95274520 95274568 -26569288 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1311 243 0 0 0 chr11 95274568 95274594 -26569262 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1311 706 226 0 21 chr11 95274649 95274789 -26569067 - B1_Mur1 SINE Alu -1 148 12 6 1311 422 237 25 15 chr11 95274813 95274939 -26568917 + B1_Mur1 SINE Alu 27 149 0 6 1311 414 100 0 0 chr11 95275298 95275358 -26568498 + (CGGGG)n Simple_repeat Simple_repeat 2 61 0 6 1311 1074 62 19 0 chr11 95275445 95275605 -26568251 + (TG)n Simple_repeat Simple_repeat 1 163 0 6 1311 564 217 0 70 chr11 95277001 95277130 -26566726 - B1_Mur1 SINE Alu 0 149 30 6 1311 255 130 0 0 chr11 95278027 95278081 -26565775 + (A)n Simple_repeat Simple_repeat 1 54 0 6 1311 590 204 0 0 chr11 95279025 95279128 -26564728 + PB1D9 SINE Alu 2 104 -16 6 1311 693 195 61 30 chr11 95279623 95279755 -26564101 - B1_Mur4 SINE Alu 0 150 15 6 1311 1016 60 104 0 chr11 95279942 95280076 -26563780 - B1_Mus1 SINE Alu 0 148 1 6 1311 207 0 0 0 chr11 95280763 95280786 -26563070 + (TTTC)n Simple_repeat Simple_repeat 3 25 0 6 1311 930 154 176 0 chr11 95280805 95280987 -26562869 - B3 SINE B2 -2 214 1 6 1311 818 216 21 11 chr11 95281325 95281512 -26562344 + ID_B1 SINE B4 2 190 -34 6 1311 1275 20 0 0 chr11 95281552 95281698 -26562158 + B1_Mus2 SINE Alu 2 147 0 6 1311 1639 26 5 0 chr11 95282133 95282324 -26561532 + B2_Mm1t SINE B2 2 193 0 6 1311 198 128 0 0 chr11 95282739 95282778 -26561078 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1311 726 226 0 104 chr11 95282782 95282955 -26560901 - RSINE1 SINE B4 0 165 11 6 1311 459 288 72 0 chr11 95283405 95283544 -26560312 + B1_Mur2 SINE Alu 1 149 0 6 1311 1004 103 70 0 chr11 95283556 95283712 -26560144 + B2_Mm2 SINE B2 28 194 -1 6 1311 1001 215 170 0 chr11 95283715 95283962 -26559894 + B4A SINE B4 1 289 -3 6 1311 726 255 59 39 chr11 95284066 95284270 -26559586 - B4 SINE B4 -2 290 83 6 1311 698 207 111 68 chr11 95284305 95284339 -26559517 - B3 SINE B2 0 216 181 6 1311 318 106 0 0 chr11 95284339 95284386 -26559470 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1311 698 207 111 68 chr11 95284386 95284558 -26559298 - B3 SINE B2 -36 180 1 6 1311 880 222 49 16 chr11 95284603 95284850 -26559006 - L1M3 LINE L1 -477 5706 5452 6 1311 23 33 0 0 chr11 95284899 95284929 -26558927 + AT_rich Low_complexity Low_complexity 1 30 0 6 1311 789 198 56 17 chr11 95284952 95285132 -26558724 - B3A SINE B2 -11 187 1 6 1311 315 274 45 54 chr11 95285137 95285249 -26558607 - PB1D7 SINE Alu -7 113 3 6 1311 244 315 108 75 chr11 95285254 95285374 -26558482 - B1_Mur2 SINE Alu -25 124 1 6 1311 22 0 0 0 chr11 95285926 95285948 -26557908 + AT_rich Low_complexity Low_complexity 1 22 0 6 1311 1040 95 0 7 chr11 95285955 95286103 -26557753 - B1_Mm SINE Alu 0 147 1 6 1311 252 0 0 0 chr11 95286186 95286214 -26557642 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 6 1311 294 29 0 0 chr11 95286281 95286316 -26557540 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1311 554 237 17 9 chr11 95286317 95286432 -26557424 - PB1D7 SINE Alu -2 118 3 6 1311 251 263 29 87 chr11 95286805 95286909 -26556947 - Charlie1a DNA MER1_type -22 1433 1336 6 1311 521 210 275 8 chr11 95286914 95287034 -26556822 + RSINE1 SINE B4 1 152 -13 6 1311 28 95 0 0 chr11 95287041 95287125 -26556731 + AT_rich Low_complexity Low_complexity 1 84 0 6 1311 700 171 51 0 chr11 95287134 95287251 -26556605 + B1_Mur1 SINE Alu 23 145 -4 6 1311 956 142 0 7 chr11 95287309 95287451 -26556405 + B1_Mur4 SINE Alu 10 150 0 6 1311 307 219 129 50 chr11 95287465 95287566 -26556290 - Charlie1a DNA MER1_type -228 1227 1119 6 1311 882 160 0 0 chr11 95287573 95287704 -26556152 - B1_Mur4 SINE Alu -1 149 19 6 1311 475 187 215 0 chr11 95287706 95287813 -26556043 - B1_Mur2 SINE Alu -5 144 15 6 1311 251 261 62 0 chr11 95287766 95287831 -26556025 - B4A SINE B4 -146 146 78 6 1311 384 22 0 0 chr11 95287845 95287890 -26555966 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1311 189 0 0 0 chr11 95287896 95287917 -26555939 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1311 389 337 37 68 chr11 95287918 95288155 -26555701 - B4A SINE B4 -10 282 66 6 1311 311 275 24 24 chr11 95288210 95288292 -26555564 - RSINE1 SINE B4 -81 84 3 6 1311 2429 232 113 116 chr11 95288292 95289152 -26554704 - Charlie1a DNA MER1_type -322 1133 281 6 1311 503 195 35 26 chr11 95289152 95289268 -26554588 + PB1D7 SINE Alu 1 117 -3 6 163 1410 81 5 0 chr11 95289277 95289463 -26554393 - B2_Mm1t SINE B2 -5 188 2 6 1312 2429 232 113 116 chr11 95289463 95289727 -26554129 - Charlie1a DNA MER1_type -1175 280 3 6 1312 21 82 0 0 chr11 95290006 95290055 -26553801 + AT_rich Low_complexity Low_complexity 1 49 0 6 1312 434 203 0 0 chr11 95290078 95290152 -26553704 - RSINE1 SINE B4 -31 134 61 6 1312 353 299 39 16 chr11 95290328 95290457 -26553399 - L2 LINE L2 -348 3071 2940 6 1312 637 279 52 73 chr11 95290552 95290881 -26552975 - L2 LINE L2 -733 2686 2365 6 1312 486 267 0 64 chr11 95291620 95291760 -26552096 + B3A SINE B2 1 131 -67 6 1312 747 290 59 0 chr11 95292112 95292298 -26551558 + ID_B1 SINE B4 4 200 -24 6 1312 708 103 0 27 chr11 95292455 95292565 -26551291 - B1_Mus2 SINE Alu 0 147 41 6 1312 320 299 13 0 chr11 95292747 95292824 -26551032 - RSINE1 SINE B4 -5 160 83 6 1312 365 253 64 158 chr11 95292953 95293155 -26550701 - B3A SINE B2 -14 184 2 7 1312 29 70 0 0 chr11 95293196 95293253 -26550603 + AT_rich Low_complexity Low_complexity 1 57 0 7 1312 588 242 0 0 chr11 95293261 95293381 -26550475 + PB1D9 SINE Alu 1 120 0 7 1312 261 135 0 0 chr11 95293406 95293443 -26550413 + B3 SINE B2 3 39 -177 7 1312 1225 41 0 0 chr11 95293445 95293592 -26550264 + B1_Mus2 SINE Alu 1 147 0 7 1312 863 157 145 0 chr11 95293610 95293776 -26550080 + B3 SINE B2 27 216 0 7 1312 554 310 13 14 chr11 95293835 95293994 -26549862 + ID_B1 SINE B4 71 224 0 7 1312 596 313 92 4 chr11 95293999 95294259 -26549597 + B4A SINE B4 4 286 -6 7 1312 771 291 18 0 chr11 95294370 95294590 -26549266 - ID_B1 SINE B4 0 224 1 7 1312 709 237 88 10 chr11 95294876 95295040 -26548816 + B3 SINE B2 1 167 -49 7 1312 321 26 0 0 chr11 95295040 95295078 -26548778 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 1312 709 237 88 10 chr11 95295078 95295105 -26548751 + B3 SINE B2 168 207 -9 7 1312 23 0 0 0 chr11 95295910 95295933 -26547923 + AT_rich Low_complexity Low_complexity 1 23 0 7 1312 231 36 0 0 chr11 95295933 95295961 -26547895 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1312 418 284 89 7 chr11 95295971 95296106 -26547750 - RSINE1 SINE B4 -17 148 3 7 1312 23 68 0 0 chr11 95296340 95296384 -26547472 + AT_rich Low_complexity Low_complexity 1 44 0 7 1312 896 153 21 0 chr11 95296427 95296571 -26547285 + B1_Mus1 SINE Alu 1 147 -1 7 1312 521 257 96 34 chr11 95296803 95296980 -26546876 - MIR SINE MIR 0 262 75 7 1312 231 333 87 55 chr11 95297099 95297226 -26546630 - L2b LINE L2 -1 3374 3244 7 1312 184 309 124 31 chr11 95297243 95297340 -26546516 - L2b LINE L2 -246 3141 3036 7 1312 286 125 88 18 chr11 95297544 95297601 -26546255 - B1_Mur4 SINE Alu 0 150 90 7 1312 503 240 93 0 chr11 95297897 95298026 -26545830 - B1_Mur1 SINE Alu -8 141 1 7 1312 233 246 92 0 chr11 95298146 95298211 -26545645 + L1ME2 LINE L1 6046 6116 -48 7 1312 570 67 0 0 chr11 95298335 95298410 -26545446 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 7 1312 868 162 7 27 chr11 95298410 95298556 -26545300 - B1_Mur4 SINE Alu -7 143 1 7 1312 875 213 39 24 chr11 95298563 95298770 -26545086 - B3 SINE B2 -6 210 1 7 1312 661 241 22 0 chr11 95298994 95299131 -26544725 - ID_B1 SINE B4 -1 223 84 7 1312 629 98 43 0 chr11 95299173 95299265 -26544591 - B1_Mur3 SINE Alu -19 130 35 7 1312 1004 48 0 0 chr11 95299702 95299826 -26544030 - B1_Mus2 SINE Alu -1 146 23 7 1312 374 80 0 0 chr11 95299982 95300032 -26543824 - B1_Mus2 SINE Alu -85 62 13 7 1312 209 219 0 15 chr11 95300032 95300097 -26543759 + T-rich Low_complexity Low_complexity 2 65 0 7 1312 277 224 132 0 chr11 95300290 95300366 -26543490 - B1_Mur1 SINE Alu -41 108 23 7 1312 336 48 0 0 chr11 95300419 95300461 -26543395 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1312 389 250 0 36 chr11 95300468 95300551 -26543305 - B4 SINE B4 -212 80 1 7 1312 399 211 13 0 chr11 95300967 95301043 -26542813 - PB1D10 SINE Alu 0 117 41 7 1312 816 174 42 0 chr11 95301061 95301205 -26542651 + B1_Mur4 SINE Alu 1 150 0 7 1312 1416 69 11 0 chr11 95301207 95301395 -26542461 + B2_Mm1t SINE B2 1 190 -3 7 1312 1198 86 0 75 chr11 95301536 95301737 -26542119 + B2_Mm2 SINE B2 3 188 -7 7 1312 860 147 35 0 chr11 95302628 95302771 -26541085 + B1_Mur2 SINE Alu 2 149 0 7 1312 243 88 0 0 chr11 95302859 95302893 -26540963 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1312 204 125 0 0 chr11 95303118 95303150 -26540706 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 7 1312 726 42 51 102 chr11 95303156 95303192 -26540664 - RMER17B LTR ERVK -498 460 439 7 1312 1161 68 0 0 chr11 95303192 95303331 -26540525 + B1_Mus2 SINE Alu 1 139 -8 7 1312 301 22 21 21 chr11 95303331 95303378 -26540478 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1312 726 42 51 102 chr11 95303385 95303505 -26540351 - RMER17B LTR ERVK -520 438 312 7 1312 500 174 16 114 chr11 95303509 95303632 -26540224 - PB1D10 SINE Alu 0 117 7 7 1312 230 206 98 0 chr11 95304198 95304290 -26539566 + (TTAA)n Simple_repeat Simple_repeat 2 102 0 7 1312 952 204 61 10 chr11 95304632 95304830 -26539026 - B3 SINE B2 -1 215 8 7 1312 196 326 11 53 chr11 95305610 95305704 -26538152 + MIRc SINE MIR 52 141 -127 7 1312 496 247 54 0 chr11 95305929 95306095 -26537761 + Lx8 LINE L1 7206 7380 -93 7 1312 380 141 16 0 chr11 95306232 95306296 -26537560 - B1_Mur2 SINE Alu -1 148 84 7 1312 1070 214 10 5 chr11 95306320 95306527 -26537329 + B3 SINE B2 2 209 -7 7 1312 274 243 14 0 chr11 95306593 95306663 -26537193 - ID4 SINE ID -11 72 2 7 1312 449 245 72 65 chr11 95306701 95306854 -26537002 + RSINE1 SINE B4 11 164 -1 7 1312 409 151 20 79 chr11 95306871 95306972 -26536884 + Lx8 LINE L1 7158 7252 -221 7 1312 3067 138 152 9 chr11 95306984 95307563 -26536293 - RMER21A LTR ERV1 -69 878 217 7 1312 276 105 0 0 chr11 95307574 95307612 -26536244 + Lx8 LINE L1 7293 7330 -143 7 1312 285 364 25 0 chr11 95307711 95307829 -26536027 + PB1 SINE Alu 1 121 -6 7 1312 261 270 200 0 chr11 95308025 95308125 -26535731 - PB1D9 SINE Alu 0 120 1 7 1312 707 155 47 53 chr11 95308344 95308494 -26535362 + B1_Mur1 SINE Alu 1 149 0 7 1312 1022 51 0 92 chr11 95308499 95308651 -26535205 + B1_Mus2 SINE Alu 1 138 -9 7 1312 297 100 0 0 chr11 95308652 95308702 -26535154 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 7 1312 187 360 53 0 chr11 95308741 95308816 -26535040 - L2b LINE L2 -301 3074 2996 7 1312 215 348 52 7 chr11 95308938 95309074 -26534782 - L2b LINE L2 -589 2830 2689 7 1312 579 259 76 0 chr11 95309512 95309643 -26534213 + ID_B1 SINE B4 82 222 -2 7 1312 275 266 167 21 chr11 95309860 95309956 -26533900 + MIRc SINE MIR 120 229 -39 7 1312 180 179 0 0 chr11 95311060 95311099 -26532757 + (TATG)n Simple_repeat Simple_repeat 2 40 0 7 1312 712 187 36 0 chr11 95311129 95311268 -26532588 - B1_Mur2 SINE Alu -5 144 1 7 1312 511 179 39 226 chr11 95311355 95311432 -26532424 - B1_Mur1 SINE Alu -1 148 95 7 1312 1443 55 16 0 chr11 95311432 95311614 -26532242 - B2_Mm2 SINE B2 -7 188 4 7 1312 511 179 39 226 chr11 95311614 95311717 -26532139 - B1_Mur1 SINE Alu -55 94 2 7 1312 420 143 0 0 chr11 95311831 95311901 -26531955 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 1312 356 284 0 13 chr11 95311981 95312056 -26531800 - B1F2 SINE Alu -55 94 21 7 1312 543 128 0 0 chr11 95312481 95312559 -26531297 + B1_Mur3 SINE Alu 67 144 -5 7 1312 576 186 84 63 chr11 95312581 95312724 -26531132 - B1_Mur1 SINE Alu -1 148 3 7 1312 1382 57 0 11 chr11 95312767 95312944 -26530912 - B2_Mm2 SINE B2 -19 176 2 7 1312 36 23 0 0 chr11 95312946 95312989 -26530867 + AT_rich Low_complexity Low_complexity 1 43 0 7 1312 767 191 172 11 chr11 95313226 95313406 -26530450 + B3 SINE B2 1 209 -7 7 1312 579 173 109 36 chr11 95313419 95313557 -26530299 + B1_Mur3 SINE Alu 2 149 0 7 1312 240 320 20 30 chr11 95313612 95313712 -26530144 - B1F SINE Alu -1 148 50 7 1312 683 281 184 20 chr11 95313777 95314275 -26529581 - L2a LINE L2 0 3426 2846 7 1312 1230 236 59 64 chr11 95314721 95315142 -26528714 - MTD LTR MaLR 0 419 1 7 1312 382 311 149 29 chr11 95315186 95315663 -26528193 - L1ME3B LINE L1 -87 6153 5620 7 1312 646 201 0 44 chr11 95315698 95315833 -26528023 + B1_Mm SINE Alu 19 147 0 7 1312 257 306 0 0 chr11 95315836 95315908 -26527948 + L1MA5 LINE L1 6182 6253 -47 7 1312 195 42 0 0 chr11 95315953 95315977 -26527879 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1312 443 209 18 147 chr11 95315980 95316143 -26527713 - RSINE1 SINE B4 -21 144 3 7 1312 1087 75 7 45 chr11 95316386 95316540 -26527316 + B1_Mus1 SINE Alu 1 148 0 7 1312 521 99 12 0 chr11 95317006 95317087 -26526769 + (TCCC)n Simple_repeat Simple_repeat 3 84 0 7 1312 21 0 0 0 chr11 95317829 95317850 -26526006 + AT_rich Low_complexity Low_complexity 1 21 0 7 1312 378 284 73 20 chr11 95317889 95318040 -26525816 - B4 SINE B4 -2 290 132 7 1312 287 264 77 44 chr11 95318244 95318335 -26525521 - PB1D7 SINE Alu -7 113 20 7 1312 683 288 45 11 chr11 95319063 95319242 -26524614 - ID_B1 SINE B4 -37 187 3 7 1312 435 107 0 0 chr11 95319711 95319786 -26524070 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 1312 24 0 0 0 chr11 95320662 95320686 -26523170 + AT_rich Low_complexity Low_complexity 1 24 0 7 1312 313 226 16 145 chr11 95321103 95321227 -26522629 - PB1D10 SINE Alu -7 110 3 7 1312 605 174 37 0 chr11 95321472 95321581 -26522275 - B1_Mur2 SINE Alu -2 147 35 7 1312 565 310 81 12 chr11 95321576 95321749 -26522107 + B4A SINE B4 98 282 -10 7 1312 275 288 12 0 chr11 95321771 95321885 -26521971 + (TATG)n Simple_repeat Simple_repeat 1 115 0 7 1312 216 304 152 51 chr11 95321967 95322085 -26521771 - L2c LINE L2 -12 3375 3246 7 1312 451 262 9 0 chr11 95322227 95322334 -26521522 + PB1D7 SINE Alu 3 110 -10 7 1312 493 235 246 35 chr11 95322588 95322653 -26521203 - B4A SINE B4 0 292 215 7 1312 252 0 0 0 chr11 95322653 95322681 -26521175 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1312 493 235 246 35 chr11 95322681 95322764 -26521092 - B4A SINE B4 -78 214 113 7 1312 441 0 0 0 chr11 95322764 95322813 -26521043 + (TATG)n Simple_repeat Simple_repeat 4 52 0 7 1312 493 235 246 35 chr11 95322813 95322866 -26520990 - B4A SINE B4 -180 112 47 7 1312 1183 177 144 37 chr11 95323065 95323364 -26520492 + RMER1B Other Other 45 375 -691 7 1312 2725 127 95 21 chr11 95323334 95323817 -26520039 + RMER1B Other Other 537 1055 -11 7 1312 21 0 0 0 chr11 95324494 95324515 -26519341 + AT_rich Low_complexity Low_complexity 1 21 0 7 1312 1123 49 35 0 chr11 95325125 95325267 -26518589 + B1_Mus1 SINE Alu 2 148 0 7 1312 271 0 0 49 chr11 95325273 95325314 -26518542 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1312 201 136 45 0 chr11 95326603 95326647 -26517209 + T-rich Low_complexity Low_complexity 2 47 0 8 1312 37 0 0 0 chr11 95326722 95326759 -26517097 + AT_rich Low_complexity Low_complexity 1 37 0 8 1312 210 114 0 0 chr11 95326964 95326999 -26516857 - ID4_ SINE ID -47 36 2 8 1312 1098 256 50 21 chr11 95327586 95327866 -26515990 + B4A SINE B4 5 292 0 8 1312 888 108 35 14 chr11 95327882 95328023 -26515833 + B1_Mur4 SINE Alu 6 149 -1 8 1312 243 0 0 0 chr11 95328025 95328052 -26515804 + (CAA)n Simple_repeat Simple_repeat 2 28 0 8 1312 369 0 0 0 chr11 95328063 95328104 -26515752 + (TTC)n Simple_repeat Simple_repeat 3 43 0 8 1312 243 0 0 0 chr11 95328104 95328131 -26515725 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1312 279 0 0 0 chr11 95328131 95328162 -26515694 + (TA)n Simple_repeat Simple_repeat 2 32 0 8 1312 401 310 74 27 chr11 95328353 95328502 -26515354 + RSINE1 SINE B4 8 163 -2 8 1312 322 218 0 0 chr11 95328523 95328578 -26515278 + RSINE1 SINE B4 109 163 -2 8 1312 680 227 129 0 chr11 95328719 95328882 -26514974 + B3 SINE B2 33 216 0 8 1312 716 109 18 0 chr11 95328952 95329062 -26514794 - PB1D9 SINE Alu 0 120 9 8 1312 416 189 186 54 chr11 95328953 95329082 -26514774 - B4A SINE B4 -66 226 81 8 1312 487 248 48 0 chr11 95329155 95329280 -26514576 + MER5A DNA MER1_type 2 132 -57 8 1312 537 242 19 25 chr11 95329520 95329666 -26514190 - B1_Mur1 SINE Alu -2 147 2 8 1312 226 260 68 75 chr11 95329555 95329688 -26514168 - MT2B LTR ERVL -332 269 138 8 1312 355 302 132 0 chr11 95329702 95329831 -26514025 - RSINE1 SINE B4 -17 148 3 8 1312 1032 54 0 114 chr11 95330030 95330197 -26513659 + B1_Mus2 SINE Alu 1 148 0 8 1312 351 154 0 0 chr11 95330197 95330262 -26513594 + A-rich Low_complexity Low_complexity 1 65 0 8 1312 381 93 0 0 chr11 95330622 95330676 -26513180 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 8 1312 180 0 0 0 chr11 95330679 95330699 -26513157 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 8 1312 393 121 14 0 chr11 95330715 95330780 -26513076 - B2_Mm2 SINE B2 -82 116 46 8 1312 878 98 167 19 chr11 95330807 95330963 -26512893 - B2_Mm1t SINE B2 -14 179 1 8 1312 817 211 7 7 chr11 95331108 95331256 -26512600 - B1_Mur3 SINE Alu -1 148 1 8 1312 647 221 8 16 chr11 95331280 95331409 -26512447 - B1_Mur1 SINE Alu -21 128 1 8 1312 466 216 84 56 chr11 95331495 95331637 -26512219 - B1_Mur1 SINE Alu -1 148 3 8 1312 204 276 206 31 chr11 95332732 95332829 -26511027 + L2a LINE L2 3304 3417 -9 8 1312 484 234 9 45 chr11 95332913 95333025 -26510831 + RSINE1 SINE B4 58 165 0 8 1312 280 329 0 0 chr11 95333070 95333146 -26510710 + ID4_ SINE ID 2 77 -6 8 1312 254 333 9 103 chr11 95333171 95333278 -26510578 - Charlie8 DNA MER1_type -2219 209 113 8 1312 639 241 20 33 chr11 95333281 95333431 -26510425 - B1_Mur1 SINE Alu 0 149 2 8 1312 588 280 22 72 chr11 95333482 95333580 -26510276 + ID_B1 SINE B4 42 134 -90 8 1312 619 214 13 119 chr11 95333580 95333739 -26510117 + B1_Mur2 SINE Alu 1 142 -7 8 1312 588 280 22 72 chr11 95333739 95333821 -26510035 + ID_B1 SINE B4 135 213 -11 8 1312 245 29 29 0 chr11 95333821 95333855 -26510001 + (TAA)n Simple_repeat Simple_repeat 2 36 0 8 1312 513 256 136 30 chr11 95334748 95334917 -26508939 + B3A SINE B2 1 187 -11 8 1312 719 220 14 28 chr11 95334937 95335082 -26508774 + B1_Mur3 SINE Alu 1 143 -6 8 1312 344 238 48 0 chr11 95337262 95337346 -26506510 - PB1D7 SINE Alu -1 119 32 8 1312 27 81 0 0 chr11 95338109 95338171 -26505685 + AT_rich Low_complexity Low_complexity 1 62 0 8 1312 21 0 0 0 chr11 95338872 95338893 -26504963 + AT_rich Low_complexity Low_complexity 1 21 0 8 1312 1156 49 0 0 chr11 95339123 95339265 -26504591 + B1_Mus2 SINE Alu 6 147 0 8 1312 1041 111 41 77 chr11 95339379 95339547 -26504309 + B2_Mm2 SINE B2 4 170 -25 8 1312 1612 42 5 0 chr11 95339547 95339736 -26504120 - B2_Mm1t SINE B2 -2 191 2 8 1312 1041 111 41 77 chr11 95339736 95339762 -26504094 + B2_Mm2 SINE B2 171 191 -4 8 1312 1328 102 5 0 chr11 95340241 95340427 -26503429 - B2_Mm2 SINE B2 -8 187 1 8 1312 24 0 0 0 chr11 95340616 95340640 -26503216 + AT_rich Low_complexity Low_complexity 1 24 0 8 1312 738 199 29 0 chr11 95340664 95340800 -26503056 + B1_Mus2 SINE Alu 1 140 -7 8 1312 800 159 56 50 chr11 95340848 95341027 -26502829 + B2_Mm2 SINE B2 2 181 -14 8 1312 377 348 0 49 chr11 95341321 95341463 -26502393 - LFSINE_Vert SINE SINE 0 459 325 8 1312 353 378 6 43 chr11 95341552 95341715 -26502141 - LFSINE_Vert SINE SINE -285 174 18 8 1312 192 77 0 0 chr11 95341756 95341782 -26502074 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1312 441 279 40 60 chr11 95343536 95343685 -26500171 - B1F SINE Alu 0 149 4 8 1312 934 229 132 31 chr11 95344465 95344722 -26499134 - B4A SINE B4 -8 284 2 8 1312 262 320 13 0 chr11 95345221 95345296 -26498560 - ID4 SINE ID -4 79 4 8 1312 240 329 171 0 chr11 95345602 95345684 -26498172 - PB1D10 SINE Alu -21 96 1 8 1312 374 226 12 23 chr11 95346078 95346164 -26497692 - MER106B DNA MER1_type -911 148 64 8 1312 1042 62 13 33 chr11 95347551 95347701 -26496155 + B1_Mus2 SINE Alu 1 147 0 8 1312 23 0 0 0 chr11 95347741 95347764 -26496092 + AT_rich Low_complexity Low_complexity 1 23 0 8 1312 540 229 114 0 chr11 95347772 95347903 -26495953 - B1_Mus2 SINE Alu 0 147 2 8 1312 500 270 0 0 chr11 95347906 95347995 -26495861 - B3 SINE B2 -127 89 1 8 1312 591 237 8 0 chr11 95348023 95348154 -26495702 + B1_Mur4 SINE Alu 1 132 -18 8 1312 221 150 0 0 chr11 95348161 95348201 -26495655 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1312 894 151 0 28 chr11 95348318 95348461 -26495395 - B1_Mur1 SINE Alu -10 139 1 8 1312 336 262 37 0 chr11 95349175 95349282 -26494574 - PB1D10 SINE Alu -5 112 2 8 1312 868 122 22 37 chr11 95349644 95349780 -26494076 + B1_Mur4 SINE Alu 2 135 -15 8 1312 965 58 29 0 chr11 95351033 95351170 -26492686 + B1_Mur4 SINE Alu 10 150 0 8 1312 188 67 0 32 chr11 95351172 95351203 -26492653 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 8 1312 524 116 12 0 chr11 95354003 95354089 -26489767 + (GA)n Simple_repeat Simple_repeat 2 88 0 8 1312 765 293 60 158 chr11 95358182 95358477 -26485379 - MER63B DNA AcHobo 0 436 128 8 1312 213 65 0 0 chr11 95358477 95358508 -26485348 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1312 792 31 10 0 chr11 95358510 95358606 -26485250 - B1_Mm SINE Alu 0 147 51 8 1312 765 293 60 158 chr11 95358606 95358694 -26485162 - MER63B DNA AcHobo -309 125 2 8 1312 443 204 469 0 chr11 95358777 95358924 -26484932 + B3 SINE B2 1 216 0 8 1312 600 236 33 95 chr11 95359329 95359540 -26484316 + B3A SINE B2 1 198 0 8 1312 616 243 140 28 chr11 95359546 95359724 -26484132 + B3A SINE B2 1 198 0 8 1312 1385 74 11 11 chr11 95360254 95360445 -26483411 - B2_Mm1t SINE B2 -1 192 2 8 1312 422 342 35 25 chr11 95360455 95360485 -26483371 - B3 SINE B2 0 216 188 8 1312 1056 217 15 0 chr11 95360485 95360683 -26483173 + B3 SINE B2 2 202 -14 8 1312 535 294 72 42 chr11 95360683 95360850 -26483006 - B3A SINE B2 -10 188 17 8 1312 641 217 54 0 chr11 95361077 95361206 -26482650 - B1_Mur2 SINE Alu -12 137 2 8 1312 252 86 0 0 chr11 95362236 95362271 -26481585 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1312 1234 55 7 0 chr11 95363175 95363321 -26480535 - B1_Mus2 SINE Alu 0 147 1 8 1312 731 135 6 161 chr11 95363521 95363689 -26480167 + B1_Mur3 SINE Alu 1 142 -7 8 1312 300 309 113 0 chr11 95363704 95363801 -26480055 - MIR SINE MIR -133 129 22 8 1312 1260 48 0 0 chr11 95364810 95364957 -26478899 + B1_Mus2 SINE Alu 1 147 0 8 1312 183 42 0 0 chr11 95364957 95364981 -26478875 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1312 426 295 0 92 chr11 95366338 95366491 -26477365 + ID_B1 SINE B4 86 224 0 8 1312 464 319 94 57 chr11 95366493 95366895 -26476961 - MLT1J LTR MaLR -39 473 38 8 1312 1201 69 0 0 chr11 95366962 95367106 -26476750 + B1_Mus2 SINE Alu 2 145 -2 8 1312 1398 250 26 47 chr11 95367120 95367464 -26476392 - MTEa LTR MaLR -42 337 1 8 1312 377 260 9 107 chr11 95367625 95367737 -26476119 + MT2B LTR ERVL 163 263 -338 8 1312 834 158 24 0 chr11 95367641 95367768 -26476088 + B1_Mur1 SINE Alu 12 141 -8 8 1312 633 195 107 23 chr11 95367774 95367893 -26475963 + B1_Mus1 SINE Alu 1 131 -17 8 1312 198 0 0 0 chr11 95367893 95367915 -26475941 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 8 1312 633 195 107 23 chr11 95367915 95367926 -26475930 + B1_Mus1 SINE Alu 132 142 -6 8 1312 1016 180 24 33 chr11 95373283 95373496 -26470360 - Lx4B LINE L1 -4 7054 6844 8 1312 360 0 0 0 chr11 95373622 95373662 -26470194 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1312 23 78 0 0 chr11 95375940 95375991 -26467865 + GC_rich Low_complexity Low_complexity 1 51 0 8 1312 450 0 0 0 chr11 95377170 95377220 -26466636 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1312 318 327 67 0 chr11 95377401 95377505 -26466351 + MIRm SINE MIR 1 111 -165 8 1312 287 313 60 49 chr11 95377731 95377964 -26465892 - L2c LINE L2 -5 3370 3136 8 1312 763 280 12 0 chr11 95378812 95378980 -26464876 + ID_B1 SINE B4 14 183 -41 8 1312 862 162 77 55 chr11 95378981 95378992 -26464864 - B3 SINE B2 -3 213 208 8 1312 516 32 0 0 chr11 95378992 95379054 -26464802 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 8 1312 862 162 77 55 chr11 95379054 95379225 -26464631 - B3 SINE B2 -9 207 27 8 1312 333 0 0 0 chr11 95379244 95379281 -26464575 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 9 1312 954 95 17 97 chr11 95379281 95379456 -26464400 - B2_Mm2 SINE B2 -34 161 1 9 1312 478 228 0 56 chr11 95379488 95379595 -26464261 - B1_Mur1 SINE Alu 0 149 49 9 1312 218 97 0 0 chr11 95379617 95379648 -26464208 - B3A SINE B2 -167 31 1 8 1312 254 191 0 60 chr11 95379648 95379687 -26464169 + ID_B1 SINE B4 169 204 -20 8 1312 652 203 0 8 chr11 95379700 95379819 -26464037 + PB1D9 SINE Alu 2 119 -1 9 1312 561 68 0 0 chr11 95379819 95379893 -26463963 + (GGAA)n Simple_repeat Simple_repeat 2 75 0 9 1312 516 149 0 0 chr11 95381670 95381764 -26462092 + (TG)n Simple_repeat Simple_repeat 2 95 0 9 1312 512 235 0 10 chr11 95382336 95382435 -26461421 + ID_B1 SINE B4 112 209 -15 9 1312 1413 190 119 64 chr11 95383492 95383852 -26460004 - MTD LTR MaLR -20 399 20 9 1312 1215 62 0 0 chr11 95384616 95384762 -26459094 + B1_Mus2 SINE Alu 2 147 0 9 1312 1105 82 0 27 chr11 95384764 95384914 -26458942 + B1_Mus2 SINE Alu 1 146 -1 9 1312 272 234 0 78 chr11 95384915 95385017 -26458839 + A-rich Low_complexity Low_complexity 1 94 0 9 1312 183 42 0 0 chr11 95385018 95385042 -26458814 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 9 1312 601 208 107 28 chr11 95385109 95385287 -26458569 - B3A SINE B2 -1 197 6 9 1312 306 318 45 18 chr11 95385456 95385568 -26458288 + PB1D10 SINE Alu 1 115 -2 9 1312 663 192 156 58 chr11 95385621 95385826 -26458030 - URR1A DNA MER1_type 0 226 2 9 1312 669 175 0 0 chr11 95385867 95386038 -26457818 + (CA)n Simple_repeat Simple_repeat 2 172 0 9 1312 1034 256 39 80 chr11 95386157 95386493 -26457363 - MTEa LTR MaLR 0 379 58 9 1312 709 251 103 45 chr11 95386939 95387269 -26456587 - L1MA7 LINE L1 -379 5912 5564 9 1312 836 359 31 19 chr11 95387295 95388044 -26455812 + L1M2 LINE L1 4736 5500 -800 9 1312 529 302 6 53 chr11 95388045 95388216 -26455640 + RSINE1 SINE B4 3 165 0 9 1312 533 228 90 31 chr11 95388973 95389136 -26454720 - B3 SINE B2 -1 197 10 9 1312 216 0 0 0 chr11 95389226 95389250 -26454606 + (GA)n Simple_repeat Simple_repeat 1 24 0 9 1312 426 39 0 0 chr11 95389252 95389304 -26454552 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1312 529 222 273 10 chr11 95389323 95389528 -26454328 - B4 SINE B4 -10 282 24 9 1312 431 268 104 14 chr11 95389549 95389693 -26454163 - ID_B1 SINE B4 -2 222 66 9 1312 427 185 102 0 chr11 95389693 95389801 -26454055 - B3 SINE B2 -10 206 88 9 1312 3478 182 83 88 chr11 95389809 95390678 -26453178 - RMER19B LTR ERVK -54 848 1 9 1312 566 144 11 0 chr11 95390678 95390768 -26453088 - B3 SINE B2 -123 93 3 9 1312 459 198 32 57 chr11 95391101 95391224 -26452632 + PB1D9 SINE Alu 1 120 0 9 1312 1166 62 0 27 chr11 95391257 95391407 -26452449 + B1_Mus1 SINE Alu 3 148 0 9 1312 641 244 90 14 chr11 95391540 95391752 -26452104 - L1MC3 LINE L1 -114 7671 7444 9 1312 3381 40 5 2 chr11 95391800 95392199 -26451657 - MTB LTR MaLR 0 400 1 9 1312 460 300 36 0 chr11 95392257 95392397 -26451459 - B1F SINE Alu -1 148 4 9 1312 1210 92 81 6 chr11 95392569 95392743 -26451113 + B2_Mm2 SINE B2 2 188 -7 9 1312 714 219 260 0 chr11 95392753 95392922 -26450934 + B3 SINE B2 1 213 -3 9 1312 224 180 40 0 chr11 95393087 95393137 -26450719 + G-rich Low_complexity Low_complexity 6 57 0 9 1312 324 0 0 0 chr11 95393320 95393356 -26450500 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 1312 1082 23 69 0 chr11 95393361 95393491 -26450365 - B1_Mus2 SINE Alu -7 140 2 9 1312 1110 242 76 44 chr11 95393505 95393847 -26450009 - MTE2b LTR MaLR -26 353 1 9 1312 981 146 222 0 chr11 95394024 95394209 -26449647 - URR1A DNA MER1_type 0 226 1 9 1312 204 40 0 0 chr11 95395894 95395919 -26447937 + (C)n Simple_repeat Simple_repeat 1 25 0 9 1312 466 279 220 6 chr11 95396132 95396305 -26447551 - ID_B1 SINE B4 -13 211 2 9 1312 532 211 105 0 chr11 95396746 95396860 -26446996 + B3 SINE B2 1 126 -90 9 1312 235 286 23 45 chr11 95397168 95397256 -26446600 + MIRc SINE MIR 76 161 -107 9 1312 279 246 237 27 chr11 95397494 95397656 -26446200 - MIR SINE MIR -57 205 13 9 1312 221 306 125 15 chr11 95397831 95397967 -26445889 - L2c LINE L2 -244 3143 2993 9 1312 30 0 0 0 chr11 95398126 95398156 -26445700 + AT_rich Low_complexity Low_complexity 1 30 0 9 1312 609 259 11 110 chr11 95398170 95398352 -26445504 + RSINE1 SINE B4 2 165 0 9 1312 354 161 11 21 chr11 95398352 95398447 -26445409 + (CA)n Simple_repeat Simple_repeat 1 94 0 9 1312 520 200 0 13 chr11 95398524 95398681 -26445175 + (CA)n Simple_repeat Simple_repeat 2 156 0 9 1312 396 0 0 0 chr11 95398759 95398803 -26445053 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1312 298 310 0 17 chr11 95398828 95398946 -26444910 + (CA)n Simple_repeat Simple_repeat 1 116 0 9 1312 189 107 0 0 chr11 95398980 95399008 -26444848 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1312 354 23 0 0 chr11 95399090 95399133 -26444723 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1312 207 100 0 0 chr11 95399217 95399247 -26444609 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1312 324 70 0 0 chr11 95399465 95399508 -26444348 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1312 291 185 12 47 chr11 95402057 95402176 -26441680 + (CCCTG)n Simple_repeat Simple_repeat 1 114 0 9 1312 2826 121 7 15 chr11 95403506 95403916 -26439940 + MTB_Mm LTR MaLR 1 407 0 9 1312 213 250 19 0 chr11 95404016 95404068 -26439788 - ID4_ SINE ID -20 63 11 9 1312 306 261 162 21 chr11 95404323 95404508 -26439348 + MLT1E1A LTR MaLR 50 309 -371 9 1312 231 302 217 0 chr11 95404540 95404646 -26439210 + MLT1E1A LTR MaLR 320 448 -176 9 1312 519 17 0 0 chr11 95405880 95405940 -26437916 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1312 680 203 34 55 chr11 95406231 95406377 -26437479 - B1_Mus2 SINE Alu 0 147 5 9 1312 252 0 0 0 chr11 95406623 95406651 -26437205 + (CCCTG)n Simple_repeat Simple_repeat 3 30 0 9 1312 486 198 29 34 chr11 95406712 95406852 -26437004 - PB1D10 SINE Alu -2 147 7 9 1312 494 298 74 19 chr11 95407342 95407599 -26436257 + L1MD LINE L1 5317 5587 -2408 9 1312 898 153 222 0 chr11 95407660 95407836 -26436020 - B3 SINE B2 0 216 2 9 1312 226 269 40 61 chr11 95407853 95407952 -26435904 + Lx8 LINE L1 7082 7178 -295 9 1312 264 91 0 0 chr11 95408181 95408225 -26435631 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1312 1775 185 85 8 chr11 95408267 95408632 -26435224 - ORR1B1 LTR MaLR -1 393 1 9 1312 356 248 103 26 chr11 95408634 95408750 -26435106 + RMER15 LTR ERVL 438 562 -13 9 1312 635 214 113 2 chr11 95408773 95408983 -26434873 + L1MC3 LINE L1 5638 5887 -457 9 1312 664 288 86 7 chr11 95409003 95409272 -26434584 + L1MC3 LINE L1 6192 6481 -1304 9 1312 666 298 86 31 chr11 95409298 95409623 -26434233 + L1MC3 LINE L1 6574 6916 -869 9 1312 441 226 39 19 chr11 95409674 95409778 -26434078 - PB1D7 SINE Alu -6 114 9 9 1312 591 255 126 16 chr11 95409834 95410025 -26433831 + ID_B1 SINE B4 8 219 -5 9 1312 255 189 0 75 chr11 95410028 95410108 -26433748 + L1MC3 LINE L1 6958 7031 -754 9 1312 448 312 20 34 chr11 95410108 95410257 -26433599 + B1F2 SINE Alu 3 149 0 9 1312 404 279 185 53 chr11 95410391 95410551 -26433305 + B3 SINE B2 2 181 -35 9 1312 1177 68 14 0 chr11 95410551 95410697 -26433159 + B1_Mus1 SINE Alu 1 148 0 9 1312 404 279 185 53 chr11 95410697 95410725 -26433131 + B3 SINE B2 182 215 -1 9 1312 1057 121 213 0 chr11 95410794 95410968 -26432888 + B3 SINE B2 2 212 -4 9 1312 862 191 7 20 chr11 95411200 95411350 -26432506 - B1_Mur4 SINE Alu -2 148 1 9 1312 23 0 0 0 chr11 95411350 95411373 -26432483 + AT_rich Low_complexity Low_complexity 1 23 0 9 1312 380 291 126 0 chr11 95411505 95411632 -26432224 - ID_B1 SINE B4 0 224 82 9 1312 918 280 67 40 chr11 95411778 95412154 -26431702 + L1MC1 LINE L1 5320 5705 -739 9 1312 292 270 0 13 chr11 95412287 95412362 -26431494 - B1F SINE Alu -8 141 68 9 1312 667 254 112 11 chr11 95412559 95412738 -26431118 + B3A SINE B2 2 198 0 9 1312 735 218 22 11 chr11 95413086 95413267 -26430589 + L1MC LINE L1 3445 3627 -2519 9 1312 257 128 21 0 chr11 95413267 95413314 -26430542 + (TCC)n Simple_repeat Simple_repeat 2 49 0 9 1312 896 191 0 0 chr11 95413364 95413511 -26430345 - B1_Mur2 SINE Alu -2 147 1 9 1312 1015 227 69 28 chr11 95413511 95413828 -26430028 + L1MC LINE L1 3609 3938 -2208 9 1312 337 156 26 0 chr11 95413894 95413971 -26429885 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 1312 1383 161 171 41 chr11 95414065 95414434 -26429422 - MTD LTR MaLR 0 419 3 9 1312 223 286 26 13 chr11 95414488 95414538 -26429318 + C-rich Low_complexity Low_complexity 31 82 0 9 1312 1441 99 0 5 chr11 95414538 95414731 -26429125 - B2_Mm2 SINE B2 -2 193 2 9 1312 223 286 26 13 chr11 95414731 95414758 -26429098 + C-rich Low_complexity Low_complexity 4 30 0 9 1312 299 213 210 100 chr11 95414781 95415003 -26428853 + L1MC1 LINE L1 5741 6000 -1785 9 1312 285 29 0 0 chr11 95415003 95415037 -26428819 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 9 1312 344 239 191 51 chr11 95415037 95415175 -26428681 + L1MC1 LINE L1 6001 6165 -168 9 1312 305 265 0 0 chr11 95415553 95415621 -26428235 + L1MC1 LINE L1 6251 6318 -26 9 1312 1355 86 43 0 chr11 95415633 95415819 -26428037 - B2_Mm2 SINE B2 -1 194 1 9 1312 1180 62 7 0 chr11 95417696 95417841 -26426015 + B1_Mus2 SINE Alu 2 147 0 9 1312 237 98 0 0 chr11 95417844 95417885 -26425971 + (A)n Simple_repeat Simple_repeat 1 41 0 9 1312 411 321 156 54 chr11 95418048 95418272 -26425584 - MER2 DNA MER2_type -12 333 87 9 1312 315 283 104 107 chr11 95418324 95418573 -26425283 - RSINE1 SINE B4 0 292 45 9 1312 197 313 101 47 chr11 95418669 95418823 -26425033 + MIRc SINE MIR 19 181 -95 9 1312 609 97 0 0 chr11 95418972 95419075 -26424781 + (TC)n Simple_repeat Simple_repeat 1 103 0 9 1312 28 29 0 0 chr11 95419550 95419585 -26424271 + AT_rich Low_complexity Low_complexity 1 35 0 9 1312 925 157 0 7 chr11 95419589 95419730 -26424126 - B1_Mur2 SINE Alu -9 140 1 9 1312 715 258 87 11 chr11 95419745 95419929 -26423927 - B3A SINE B2 0 198 1 9 1312 23 54 0 0 chr11 95420301 95420338 -26423518 + AT_rich Low_complexity Low_complexity 1 37 0 9 20 516 317 9 52 chr11 95420338 95420551 -26423305 - MIRb SINE MIR -39 229 26 1 1313 733 196 7 39 chr11 95420716 95420870 -26422986 + B1F SINE Alu 1 149 0 1 1313 934 183 68 39 chr11 95420878 95421083 -26422773 + B3 SINE B2 2 212 -4 1 1313 405 0 0 0 chr11 95422485 95422530 -26421326 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1313 441 0 0 0 chr11 95422632 95422681 -26421175 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1313 1110 269 172 29 chr11 95423397 95423845 -26420011 - RLTR18B LTR ERVK 0 512 1 1 1313 275 198 102 20 chr11 95424136 95424234 -26419622 - PB1D10 SINE Alu 0 117 12 1 1313 309 269 15 0 chr11 95424293 95424360 -26419496 - ID4_ SINE ID -13 70 3 1 1313 210 37 0 0 chr11 95424413 95424440 -26419416 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1313 905 200 7 0 chr11 95424444 95424589 -26419267 - B1_Mur1 SINE Alu -3 146 1 1 1313 462 361 32 0 chr11 95424637 95424795 -26419061 - RSINE1 SINE B4 0 165 3 1 1313 441 54 0 0 chr11 95425269 95425325 -26418531 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1313 723 279 0 0 chr11 95425326 95425480 -26418376 - B3A SINE B2 -43 155 2 1 1313 320 345 22 71 chr11 95427354 95427427 -26416429 + MER33 DNA MER1_type 1 73 -251 1 1313 921 79 0 0 chr11 95427427 95427554 -26416302 + (GAA)n Simple_repeat Simple_repeat 3 129 0 1 1313 320 345 22 71 chr11 95427554 95427566 -26416290 + MER33 DNA MER1_type 74 88 -236 1 1313 758 184 7 33 chr11 95427566 95427718 -26416138 + B1_Mur3 SINE Alu 2 149 0 1 1313 320 345 22 71 chr11 95427718 95427815 -26416041 + MER33 DNA MER1_type 89 175 -149 1 1313 477 0 0 0 chr11 95427815 95427868 -26415988 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1313 432 308 69 0 chr11 95428098 95428228 -26415628 + ID_B1 SINE B4 86 224 0 1 1313 192 40 0 0 chr11 95428231 95428256 -26415600 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 1 1313 354 138 0 0 chr11 95428262 95428320 -26415536 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1313 405 0 0 0 chr11 95431085 95431130 -26412726 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1313 288 0 0 0 chr11 95431130 95431161 -26412695 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1313 257 322 69 9 chr11 95431543 95431659 -26412197 + MIR3 SINE MIR 79 201 -7 1 1313 209 95 0 67 chr11 95432975 95433020 -26410836 + A-rich Low_complexity Low_complexity 2 43 0 1 1313 396 0 0 0 chr11 95433512 95433556 -26410300 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1313 333 125 0 0 chr11 95433689 95433745 -26410111 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1313 269 183 0 16 chr11 95434015 95434076 -26409780 + (TATG)n Simple_repeat Simple_repeat 2 61 0 1 1313 373 253 0 12 chr11 95434194 95434278 -26409578 + ID4_ SINE ID 1 83 0 1 1313 203 88 0 29 chr11 95434345 95434380 -26409476 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1313 478 171 26 7 chr11 95434676 95434829 -26409027 + (CA)n Simple_repeat Simple_repeat 2 157 0 1 1313 411 193 0 0 chr11 95434834 95434917 -26408939 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1313 852 129 28 23 chr11 95434919 95435346 -26408510 + (CA)n Simple_repeat Simple_repeat 1 429 0 1 1313 258 138 19 64 chr11 95440477 95440559 -26403297 - B1_Mus1 SINE Alu -69 81 9 1 1313 466 296 67 0 chr11 95442733 95442868 -26400988 + MER91A DNA Tip100 15 158 -38 1 1313 329 0 24 0 chr11 95443543 95443584 -26400272 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1313 371 209 53 26 chr11 95444286 95444399 -26399457 - Tigger15a DNA TcMar -328 387 272 1 1313 228 190 43 97 chr11 95444457 95444550 -26399306 + MT2B LTR ERVL 153 240 -361 1 1313 359 224 12 12 chr11 95444478 95444564 -26399292 + PB1D10 SINE Alu 11 96 -21 1 1313 261 57 0 0 chr11 95444580 95444615 -26399241 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1313 489 239 0 17 chr11 95445010 95445251 -26398605 + C-rich Low_complexity Low_complexity 1 236 0 1 1313 326 341 118 11 chr11 95445333 95445511 -26398345 + MIRb SINE MIR 64 260 -8 1 1313 268 353 94 14 chr11 95446325 95446463 -26397393 + MIRb SINE MIR 110 258 -10 1 1313 215 304 29 0 chr11 95447247 95447316 -26396540 + MIRc SINE MIR 81 151 -117 1 1313 207 0 0 0 chr11 95448804 95448827 -26395029 + (CAG)n Simple_repeat Simple_repeat 2 24 0 1 1313 204 67 0 0 chr11 95448936 95448966 -26394890 + (CGCTG)n Simple_repeat Simple_repeat 2 31 0 1 1313 205 241 0 0 chr11 95449056 95449110 -26394746 + C-rich Low_complexity Low_complexity 1 54 0 1 1313 230 29 0 56 chr11 95449510 95449546 -26394310 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 1 1313 370 125 12 12 chr11 95449556 95449637 -26394219 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1313 243 254 0 87 chr11 95449638 95449707 -26394149 - ID4_ SINE ID -18 65 3 1 1313 432 0 0 0 chr11 95449991 95450039 -26393817 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1313 181 262 129 16 chr11 95450663 95450725 -26393131 - L3b LINE CR1 -29 453 385 1 1313 207 268 77 112 chr11 95451111 95451254 -26392602 + MIRc SINE MIR 12 149 -119 1 1313 291 288 12 0 chr11 95451327 95451407 -26392449 - L2a LINE L2 -6 3420 3340 1 1313 1134 159 81 14 chr11 95451430 95451641 -26392215 + URR1B DNA MER1_type 1 225 0 1 1313 213 246 0 42 chr11 95451759 95451831 -26392025 + (CCA)n Simple_repeat Simple_repeat 2 70 0 1 1313 1099 266 74 37 chr11 95451934 95452165 -26391691 + MTEa LTR MaLR 13 264 -115 1 1313 1192 222 120 24 chr11 95452165 95452385 -26391471 + ORR1D1 LTR MaLR 1 242 -132 1 1313 198 0 0 0 chr11 95452385 95452407 -26391449 + (CCTG)n Simple_repeat Simple_repeat 4 25 0 1 1313 1192 222 120 24 chr11 95452407 95452527 -26391329 + ORR1D1 LTR MaLR 243 373 -1 1 1313 1099 266 74 37 chr11 95452527 95452580 -26391276 + MTEa LTR MaLR 265 318 -61 1 1313 1258 64 116 0 chr11 95452580 95452752 -26391104 - B2_Mm2 SINE B2 -3 192 1 1 1313 1099 266 74 37 chr11 95452752 95452818 -26391038 + MTEa LTR MaLR 319 377 -2 1 1313 378 0 0 0 chr11 95453215 95453257 -26390599 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1313 207 336 96 0 chr11 95453687 95453791 -26390065 - MIRb SINE MIR -80 188 75 1 1313 693 36 0 0 chr11 95454371 95454455 -26389401 + (TGGA)n Simple_repeat Simple_repeat 4 87 0 1 1313 842 234 57 47 chr11 95455198 95455409 -26388447 - B3 SINE B2 -2 214 2 1 1313 814 245 59 0 chr11 95455417 95455621 -26388235 - ID_B1 SINE B4 -6 218 3 1 1313 216 340 132 0 chr11 95455662 95455768 -26388088 - ID_B1 SINE B4 -35 189 70 1 1313 220 186 0 44 chr11 95457159 95457204 -26386652 + polypurine Low_complexity Low_complexity 1 43 0 1 1313 219 139 0 0 chr11 95460089 95460125 -26383731 + (GGA)n Simple_repeat Simple_repeat 2 37 0 1 1313 526 288 147 16 chr11 95460127 95460378 -26383478 + B4 SINE B4 5 288 -4 1 1313 234 299 0 13 chr11 95460383 95460461 -26383395 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1313 291 122 0 0 chr11 95462735 95462784 -26381072 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1313 2255 166 147 25 chr11 95463080 95463555 -26380301 - RMER16 LTR ERVK 0 533 1 1 1313 382 182 0 13 chr11 95463555 95463633 -26380223 - RMER16-int LTR ERVK 0 5406 5330 1 1313 22612 111 15 31 chr11 95463723 95464665 -26379191 - RMER16-int LTR ERVK -109 5297 4365 1 1313 1085 129 0 0 chr11 95464665 95464812 -26379044 - B1_Mus1 SINE Alu 0 148 2 1 1313 22612 111 15 31 chr11 95464812 95466766 -26377090 - RMER16-int LTR ERVK -1042 4364 2409 1 1313 1235 48 0 0 chr11 95466766 95466912 -26376944 + B1_Mus2 SINE Alu 2 147 0 1 1313 22612 111 15 31 chr11 95466912 95467697 -26376159 - RMER16-int LTR ERVK -2998 2408 1677 1 1313 910 83 114 0 chr11 95467697 95467829 -26376027 + B1_Mus1 SINE Alu 1 147 -1 1 1313 1645 350 50 65 chr11 95467829 95468216 -26375640 - SRV_MM-int LTR ERVK -3088 3079 2707 1 1313 1233 110 35 0 chr11 95468216 95468389 -26375467 + B2_Mm1t SINE B2 1 179 -14 1 1313 353 213 83 62 chr11 95468436 95468581 -26375275 + B2_Mm2 SINE B2 47 194 -1 1 1313 1236 34 0 13 chr11 95468585 95468734 -26375122 + B1_Mus2 SINE Alu 1 147 0 1 1313 333 0 0 0 chr11 95468734 95468771 -26375085 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1313 1551 352 52 50 chr11 95468808 95470311 -26373545 - SRV_MM-int LTR ERVK -5132 3085 1173 1 1313 305 210 37 12 chr11 95470331 95470413 -26373443 - RMER16 LTR ERVK -449 84 1 1 1313 603 40 0 0 chr11 95470823 95470897 -26372959 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1313 1423 68 11 0 chr11 95470958 95471135 -26372721 + B2_Mm1t SINE B2 1 179 -14 1 1313 410 86 396 9 chr11 95471164 95471270 -26372586 + B2_Mm2 SINE B2 48 194 -1 1 1313 317 343 0 33 chr11 95471793 95471977 -26371879 + CT-rich Low_complexity Low_complexity 1 178 0 1 1313 343 288 53 63 chr11 95473189 95473378 -26370478 - L2c LINE L2 -234 3153 2964 1 1313 458 179 0 35 chr11 95473493 95473580 -26370276 - ID_B1 SINE B4 0 224 141 1 1313 953 155 0 7 chr11 95473987 95474136 -26369720 + B1_Mur3 SINE Alu 1 148 -1 1 1313 608 243 78 7 chr11 95474178 95474319 -26369537 - RSINE1 SINE B4 -4 161 11 1 1313 887 256 77 0 chr11 95474334 95474541 -26369315 - ID_B1 SINE B4 0 224 2 1 1313 261 75 0 0 chr11 95474917 95474957 -26368899 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 1 1313 447 287 58 22 chr11 95475032 95475171 -26368685 + B1F SINE Alu 1 144 -5 1 1313 349 250 8 107 chr11 95475181 95475302 -26368554 + PB1D9 SINE Alu 5 113 -7 1 1313 251 174 188 0 chr11 95475318 95475387 -26368469 + ID4_ SINE ID 1 82 -1 1 1313 444 343 81 29 chr11 95475434 95475470 -26368386 - MLT1F LTR MaLR -241 328 297 1 1313 1324 152 9 43 chr11 95475470 95475703 -26368153 - URR1A DNA MER1_type -1 225 1 1 1313 477 332 137 23 chr11 95475703 95475959 -26367897 - MLT1F LTR MaLR -263 285 1 1 1313 831 130 34 11 chr11 95477047 95477498 -26366358 + (TG)n Simple_repeat Simple_repeat 1 461 0 1 1313 225 0 0 0 chr11 95477615 95477640 -26366216 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1313 210 174 0 5 chr11 95477715 95477763 -26366093 - MIRc SINE MIR -120 148 99 1 1313 588 294 0 7 chr11 95478579 95478716 -26365140 + B1F1 SINE Alu 12 147 -2 1 1313 222 370 65 18 chr11 95479030 95479198 -26364658 - L2 LINE L2 -550 2869 2694 1 1313 1439 33 0 0 chr11 95479738 95479922 -26363934 + B2_Mm1a SINE B2 10 193 0 1 1313 197 229 148 0 chr11 95481354 95481415 -26362441 - MIRm SINE MIR -125 151 82 1 1313 181 376 45 0 chr11 95481457 95481590 -26362266 + L2 LINE L2 2354 2492 -927 1 1313 1598 62 0 0 chr11 95481872 95482065 -26361791 - B2_Mm1t SINE B2 0 193 1 1 1313 189 94 0 0 chr11 95482237 95482269 -26361587 + (CACCC)n Simple_repeat Simple_repeat 3 34 0 1 1313 1593 125 9 0 chr11 95484184 95484408 -26359448 - URR1A DNA MER1_type 0 226 1 1 1313 494 296 43 29 chr11 95485108 95485133 -26358723 - ID_B1 SINE B4 -42 250 128 1 1313 669 148 17 0 chr11 95485133 95485248 -26358608 - B1_Mur3 SINE Alu 0 149 33 1 1313 494 296 43 29 chr11 95485248 95485271 -26358585 - ID_B1 SINE B4 -42 127 1 1 1313 615 72 0 0 chr11 95485271 95485354 -26358502 - B2_Mm2 SINE B2 -112 83 1 1 1313 193 355 17 70 chr11 95485698 95485813 -26358043 - MIR3 SINE MIR -2 206 98 1 1313 651 190 86 21 chr11 95486236 95486376 -26357480 - B1_Mur2 SINE Alu 0 149 1 1 1313 386 111 0 12 chr11 95486385 95486498 -26357358 - B2_Mm2 SINE B2 0 195 48 1 1313 1391 73 23 0 chr11 95486527 95486704 -26357152 - B2_Mm2 SINE B2 -14 181 1 1 1313 198 321 92 0 chr11 95486796 95486905 -26356951 - L2c LINE L2 -3 3384 3266 1 1313 223 288 85 58 chr11 95486955 95487192 -26356664 + MIRc SINE MIR 14 251 -17 1 1313 184 321 0 0 chr11 95487758 95487814 -26356042 - MIRc SINE MIR -201 67 12 1 1313 338 322 33 33 chr11 95488670 95488821 -26355035 - MER103 DNA DNA -8 158 8 1 1313 186 347 10 78 chr11 95488982 95488993 -26354863 - L2c LINE L2 -16 3371 3361 1 1313 180 77 0 0 chr11 95488993 95489019 -26354837 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1313 186 347 10 78 chr11 95489019 95489110 -26354746 - L2c LINE L2 -27 3360 3276 1 1313 333 0 0 0 chr11 95489110 95489147 -26354709 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1 1313 191 356 59 97 chr11 95490739 95491143 -26352713 + L2b LINE L2 2981 3369 -6 1 1313 1090 172 20 10 chr11 95491890 95492090 -26351766 - URR1B DNA MER1_type -23 202 1 1 1313 255 125 0 0 chr11 95492652 95492692 -26351164 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 1 1313 1417 54 36 46 chr11 95497020 95497215 -26346641 - B2_Mm2 SINE B2 -1 194 2 1 1313 23 0 0 0 chr11 95497219 95497242 -26346614 + AT_rich Low_complexity Low_complexity 1 23 0 1 1313 288 265 61 10 chr11 95497242 95497341 -26346515 - Lx8 LINE L1 -2 7471 7368 1 1313 738 153 74 30 chr11 95497401 95497536 -26346320 - B1_Mur3 SINE Alu -8 141 1 1 1313 209 306 0 0 chr11 95498284 95498346 -26345510 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1 1313 599 174 7 0 chr11 95498363 95498507 -26345349 + CT-rich Low_complexity Low_complexity 2 146 0 1 1313 320 213 19 122 chr11 95498594 95498701 -26345155 + MER5A1 DNA MER1_type 70 165 -1 1 1313 799 111 245 13 chr11 95498708 95498863 -26344993 + B2_Mm2 SINE B2 3 193 -2 1 1313 420 272 35 17 chr11 95499040 95499156 -26344700 - RSINE1 SINE B4 -45 120 3 1 1313 270 136 0 0 chr11 95499168 95499212 -26344644 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1313 1209 62 0 0 chr11 95499212 95499358 -26344498 - B1_Mm SINE Alu 0 147 2 1 1313 478 288 103 66 chr11 95500150 95500392 -26343464 - MIR SINE MIR -5 263 13 1 1313 583 226 12 59 chr11 95502711 95502880 -26340976 + B4A SINE B4 1 161 -131 2 1313 219 349 61 38 chr11 95503412 95503543 -26340313 + L2b LINE L2 3029 3162 -213 3 1313 405 309 27 54 chr11 95503598 95503745 -26340111 - RSINE1 SINE B4 -2 163 21 4 1313 318 67 0 0 chr11 95504408 95504453 -26339403 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 5 1313 219 139 0 0 chr11 95505050 95505086 -26338770 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1313 291 85 0 0 chr11 95505086 95505133 -26338723 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 7 1313 533 64 13 0 chr11 95506113 95506191 -26337665 + (GA)n Simple_repeat Simple_repeat 1 79 0 8 1313 432 0 0 0 chr11 95507444 95507492 -26336364 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1313 838 139 35 7 chr11 95507802 95507947 -26335909 + B1_Mur3 SINE Alu 1 149 0 1 1313 344 21 0 40 chr11 95508214 95508264 -26335592 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 1 1313 498 190 6 16 chr11 95508341 95508523 -26335333 + CT-rich Low_complexity Low_complexity 1 180 0 1 1313 655 256 0 13 chr11 95508545 95508703 -26335153 + L2 LINE L2 2742 2897 -522 1 1313 280 317 80 32 chr11 95509297 95509548 -26334308 - L2 LINE L2 -417 3002 2740 1 1313 203 0 0 36 chr11 95509576 95509604 -26334252 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 1 1313 430 245 205 56 chr11 95510923 95511118 -26332738 + B4A SINE B4 12 235 -57 1 1313 1566 31 0 20 chr11 95511147 95511346 -26332510 - B2_Mm2 SINE B2 0 195 1 1 1313 522 186 10 0 chr11 95511356 95511453 -26332403 + PB1D9 SINE Alu 23 120 0 1 1313 326 321 55 30 chr11 95511453 95511518 -26332338 + B4A SINE B4 107 272 -20 1 1313 193 130 0 61 chr11 95511569 95511618 -26332238 + GA-rich Low_complexity Low_complexity 4 49 0 2 1313 297 0 0 0 chr11 95512808 95512841 -26331015 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1313 770 183 67 40 chr11 95513389 95513468 -26330388 - B3 SINE B2 0 198 104 2 1313 2741 64 42 30 chr11 95513468 95513870 -26329986 + MTB_Mm LTR MaLR 1 407 0 2 1313 770 139 0 44 chr11 95513870 95513974 -26329882 - B3 SINE B2 -113 103 2 2 1313 243 207 35 0 chr11 95514903 95514961 -26328895 - L1MA9 LINE L1 -67 6245 6186 2 1313 206 156 22 0 chr11 95515100 95515145 -26328711 + CT-rich Low_complexity Low_complexity 1 46 0 2 1313 455 221 19 0 chr11 95515155 95515259 -26328597 - PB1D10 SINE Alu -7 110 5 2 1313 269 282 39 0 chr11 95515170 95515273 -26328583 - ID_B1 SINE B4 -48 176 70 2 1313 252 239 39 148 chr11 95515295 95515339 -26328517 + MT2B2 LTR ERVL 127 156 -428 2 1313 465 207 11 0 chr11 95515339 95515426 -26328430 + B1_Mur3 SINE Alu 1 88 -61 2 1313 227 265 38 75 chr11 95515541 95515647 -26328209 - PB1D10 SINE Alu -13 104 3 3 1313 540 252 14 36 chr11 95515674 95515814 -26328042 - ID_B1 SINE B4 -9 215 79 3 1313 396 0 0 0 chr11 95516203 95516247 -26327609 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1313 661 240 98 0 chr11 95516323 95516506 -26327350 - B3 SINE B2 -15 201 1 3 1313 496 256 16 0 chr11 95516506 95516626 -26327230 - B4 SINE B4 -65 227 106 3 1313 468 77 0 0 chr11 95516707 95516772 -26327084 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1313 511 348 43 79 chr11 95516774 95516804 -26327052 - B4A SINE B4 -24 268 243 3 1313 1122 48 0 20 chr11 95516804 95516953 -26326903 - B1_Mm SINE Alu 0 147 2 3 1313 511 348 43 79 chr11 95516953 95516985 -26326871 - B4A SINE B4 -50 242 222 3 1313 1529 57 0 0 chr11 95516985 95517177 -26326679 + B2_Mm1t SINE B2 1 192 -1 3 1313 511 348 43 79 chr11 95517177 95517391 -26326465 - B4A SINE B4 -71 221 2 3 1313 1133 50 0 0 chr11 95517545 95517684 -26326172 - B1_Mus2 SINE Alu -8 139 1 3 1313 626 188 0 0 chr11 95517820 95517932 -26325924 - RSINE1 SINE B4 -43 122 11 4 1313 1343 95 0 5 chr11 95518156 95518346 -26325510 - B2_Mm2 SINE B2 -6 189 1 4 1313 386 275 36 0 chr11 95518386 95518539 -26325317 - L1M4 LINE L1 -1836 4310 4151 4 1313 432 147 0 0 chr11 95518541 95518616 -26325240 + (TCC)n Simple_repeat Simple_repeat 1 75 0 4 1313 545 318 49 39 chr11 95518760 95519045 -26324811 - B4A SINE B4 -4 288 1 4 1313 312 293 91 94 chr11 95519048 95519334 -26324522 - HAL1 LINE L1 -1425 1082 798 4 1313 628 264 115 12 chr11 95519633 95519798 -26324058 + B3 SINE B2 1 182 -34 4 1313 351 222 0 0 chr11 95519798 95519879 -26323977 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1313 762 249 0 72 chr11 95520078 95520273 -26323583 - B4A SINE B4 0 292 112 4 1313 389 86 0 0 chr11 95520272 95520330 -26323526 - B2_Mm2 SINE B2 -137 58 1 4 1313 341 356 8 17 chr11 95520335 95520452 -26323404 - PB1D10 SINE Alu -1 116 1 5 1313 453 306 30 7 chr11 95520631 95520766 -26323090 - B1_Mur1 SINE Alu -3 146 9 5 1313 313 214 122 0 chr11 95520786 95520884 -26322972 - PB1D10 SINE Alu -7 110 1 5 1313 300 320 0 0 chr11 95521028 95521106 -26322750 + ID4_ SINE ID 4 81 -2 5 1313 482 337 35 86 chr11 95521116 95521314 -26322542 + B3A SINE B2 15 202 -14 5 1313 375 239 18 0 chr11 95521325 95521492 -26322364 + (CA)n Simple_repeat Simple_repeat 1 170 0 5 1313 35 54 0 0 chr11 95521511 95521567 -26322289 + AT_rich Low_complexity Low_complexity 1 56 0 5 1313 3912 155 69 78 chr11 95521817 95521924 -26321932 - RMER19B LTR ERVK 0 902 797 5 1313 1024 68 0 108 chr11 95521924 95522090 -26321766 + B1_Mus1 SINE Alu 1 148 0 5 1313 3912 171 66 81 chr11 95522090 95522926 -26320930 - RMER19B LTR ERVK -106 796 47 5 1313 279 269 73 9 chr11 95523072 95523181 -26320675 + LTR75 LTR ERVL 115 230 -332 5 1313 572 354 42 62 chr11 95523536 95523985 -26319871 + MLT1L LTR MaLR 3 442 -168 6 1313 1130 260 70 42 chr11 95524019 95524376 -26319480 + MTEb LTR MaLR 11 377 -2 6 1313 879 228 44 0 chr11 95524531 95524737 -26319119 - B3 SINE B2 -1 215 1 6 1313 836 161 162 25 chr11 95524825 95525023 -26318833 - URR1B DNA MER1_type 0 225 1 6 1313 182 345 44 26 chr11 95525034 95525147 -26318709 + L2c LINE L2 3272 3386 -1 6 1313 232 250 54 27 chr11 95525263 95525337 -26318519 + MIRm SINE MIR 47 122 -154 6 1313 915 191 6 6 chr11 95525352 95525515 -26318341 + RSINE1 SINE B4 2 164 -1 6 1313 1056 198 39 0 chr11 95525544 95525751 -26318105 - B3 SINE B2 0 216 2 6 1313 198 91 0 0 chr11 95525923 95525956 -26317900 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 1313 1025 53 23 0 chr11 95525957 95526088 -26317768 - B1_Mm SINE Alu -13 134 1 6 1313 288 0 0 0 chr11 95526111 95526143 -26317713 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1313 648 209 42 42 chr11 95526146 95526311 -26317545 - B3 SINE B2 -50 166 2 7 1313 250 279 0 0 chr11 95526344 95526405 -26317451 - ID4 SINE ID 0 83 23 7 1313 1043 70 20 14 chr11 95526584 95526730 -26317126 - B1_Mus1 SINE Alu 0 148 2 7 1313 318 50 0 0 chr11 95526870 95526910 -26316946 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1313 338 191 0 29 chr11 95526910 95526973 -26316883 - B1_Mur3 SINE Alu -87 62 1 7 1313 257 288 0 27 chr11 95526915 95526990 -26316866 - B4 SINE B4 -149 143 71 7 1313 285 53 0 0 chr11 95527130 95527168 -26316688 - tRNA-Arg-AGA tRNA tRNA -38 38 1 7 1313 1114 41 7 14 chr11 95527356 95527503 -26316353 + B1_Mus2 SINE Alu 1 146 -1 7 1313 182 62 31 0 chr11 95527504 95527536 -26316320 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 7 1313 1301 68 17 0 chr11 95529541 95529718 -26314138 - B2_Mm2 SINE B2 -14 181 2 8 1313 747 193 54 54 chr11 95529829 95530053 -26313803 - URR1B DNA MER1_type 0 225 2 8 1313 1363 68 10 20 chr11 95530274 95530470 -26313386 - B2_Mm2 SINE B2 0 195 2 8 1313 248 284 49 12 chr11 95530552 95530634 -26313222 + MIR3 SINE MIR 96 180 -28 8 1313 966 72 50 0 chr11 95530636 95530775 -26313081 + B1_Mus2 SINE Alu 2 147 0 8 1313 257 0 30 0 chr11 95530877 95530910 -26312946 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 8 1313 490 221 0 21 chr11 95530910 95531007 -26312849 - PB1D9 SINE Alu -12 108 14 8 1313 268 143 0 20 chr11 95531062 95531112 -26312744 - ID_B1 SINE B4 -2 222 174 8 1313 442 194 67 10 chr11 95531214 95531318 -26312538 + PB1D10 SINE Alu 1 110 -7 8 1313 773 211 14 0 chr11 95531421 95531568 -26312288 + B1_Mur2 SINE Alu 1 149 0 8 1313 487 264 13 26 chr11 95531579 95531731 -26312125 + B1_Mur4 SINE Alu 1 150 0 9 1313 247 324 71 9 chr11 95531748 95531860 -26311996 + PB1D7 SINE Alu 2 120 0 9 1313 286 382 9 26 chr11 95532270 95532383 -26311473 + RSINE1 SINE B4 40 150 -15 9 1313 285 230 328 54 chr11 95532440 95532568 -26311288 + RSINE1 SINE B4 3 165 0 9 1313 546 219 53 23 chr11 95532987 95533118 -26310738 + B1_Mur1 SINE Alu 10 144 -5 9 1313 391 167 14 0 chr11 95533145 95533217 -26310639 + B1_Mur3 SINE Alu 52 124 -25 9 1313 257 320 0 0 chr11 95533401 95533476 -26310380 + ID_B1 SINE B4 145 219 -5 9 1313 251 260 89 25 chr11 95533594 95533673 -26310183 + RSINE1 SINE B4 82 165 0 9 1313 21 57 0 0 chr11 95533684 95533719 -26310137 + AT_rich Low_complexity Low_complexity 1 35 0 9 1313 1424 6 0 0 chr11 95533721 95533891 -26309965 + L1Md_A LINE L1 6413 6582 0 9 1313 481 250 28 0 chr11 95533928 95534036 -26309820 + RSINE1 SINE B4 55 165 0 1 1313 24 53 0 0 chr11 95534036 95534074 -26309782 + AT_rich Low_complexity Low_complexity 1 38 0 1 1313 510 202 229 11 chr11 95534204 95534379 -26309477 + B3 SINE B2 4 216 0 1 1313 1110 54 0 33 chr11 95534379 95534531 -26309325 + B1_Mus2 SINE Alu 1 147 0 1 1313 21 36 0 0 chr11 95534531 95534559 -26309297 + AT_rich Low_complexity Low_complexity 1 28 0 1 1313 1160 48 0 0 chr11 95535048 95535194 -26308662 + B1_Mus2 SINE Alu 2 147 0 1 1313 201 74 0 0 chr11 95535257 95535284 -26308572 + (GGA)n Simple_repeat Simple_repeat 2 28 0 1 1313 465 255 13 7 chr11 95536657 95536807 -26307049 + (TGGG)n Simple_repeat Simple_repeat 4 154 0 1 1313 246 193 53 0 chr11 95538216 95538273 -26305583 + PB1D7 SINE Alu 59 118 -2 1 1313 576 183 137 10 chr11 95538427 95538593 -26305263 - B3 SINE B2 -7 188 1 1 1313 183 303 37 75 chr11 95540015 95540122 -26303734 + L2a LINE L2 3314 3416 -10 1 1313 237 185 0 0 chr11 95540457 95540522 -26303334 + (TTTG)n Simple_repeat Simple_repeat 1 65 0 1 1313 316 307 41 41 chr11 95540522 95540668 -26303188 - B1_Mur1 SINE Alu -1 148 3 1 1313 1335 63 5 25 chr11 95542360 95542556 -26301300 - B2_Mm2 SINE B2 -2 193 2 1 1313 245 283 59 29 chr11 95544034 95544136 -26299720 - PB1D10 SINE Alu -9 108 4 1 1313 216 310 28 57 chr11 95544048 95544154 -26299702 - ID_B1 SINE B4 -52 172 70 1 1313 541 202 26 9 chr11 95544775 95544890 -26298966 - ID_B1 SINE B4 -3 221 105 1 1313 190 289 77 0 chr11 95546098 95546150 -26297706 + MIRb SINE MIR 20 75 -193 1 1313 873 199 46 51 chr11 95546195 95546412 -26297444 - B3 SINE B2 0 216 1 1 1313 257 246 0 0 chr11 95546458 95546515 -26297341 + ID4 SINE ID 2 58 -25 1 1313 647 309 34 68 chr11 95546712 95546976 -26296880 + B4A SINE B4 20 274 -18 1 1313 367 327 57 20 chr11 95547061 95547303 -26296553 + MTEa LTR MaLR 105 365 -14 1 1313 976 166 21 98 chr11 95548211 95548445 -26295411 + B3 SINE B2 1 216 0 1 1313 366 71 36 0 chr11 95548759 95548815 -26295041 - B2_Mm2 SINE B2 -57 138 81 1 1313 198 0 0 0 chr11 95549046 95549068 -26294788 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1313 964 68 15 0 chr11 95549270 95549402 -26294454 + B1_Mus1 SINE Alu 5 138 -10 1 1313 835 230 33 23 chr11 95550677 95550891 -26292965 + B3 SINE B2 1 216 0 1 1313 471 35 0 0 chr11 95551077 95551134 -26292722 + (GGA)n Simple_repeat Simple_repeat 1 57 0 1 164 219 331 0 37 chr11 95551421 95551584 -26292272 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 1 1314 991 60 160 18 chr11 95552071 95552240 -26291616 + B2_Mm2 SINE B2 3 195 0 1 1314 3316 38 0 0 chr11 95553101 95553497 -26290359 - MTA_Mm LTR MaLR 0 396 1 1 1314 448 207 3 20 chr11 95553789 95553899 -26289957 + PB1D10 SINE Alu 10 120 0 1 1314 841 182 7 0 chr11 95553911 95554059 -26289797 + B1_Mur3 SINE Alu 1 149 0 1 1314 271 222 0 0 chr11 95554614 95554668 -26289188 - PB1D9 SINE Alu -1 119 66 1 1314 803 174 0 46 chr11 95554673 95554824 -26289032 - B1_Mur2 SINE Alu -5 144 1 1 1314 1156 68 0 0 chr11 95554831 95554979 -26288877 - B1_Mus1 SINE Alu 0 148 1 1 1314 322 375 34 68 chr11 95555026 95555318 -26288538 + Charlie7 DNA MER1_type 156 437 -2175 1 1314 338 321 15 8 chr11 95555354 95555486 -26288370 + B1F2 SINE Alu 1 133 -16 1 1314 205 267 0 0 chr11 95555490 95555535 -26288321 + GA-rich Low_complexity Low_complexity 3 47 0 1 1314 743 294 57 11 chr11 95555539 95555801 -26288055 + B4A SINE B4 3 276 -16 1 1314 716 279 132 12 chr11 95555857 95556100 -26287756 + B4A SINE B4 1 272 -20 1 1314 243 0 0 0 chr11 95556135 95556162 -26287694 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1314 347 366 14 60 chr11 95556222 95556404 -26287452 + Charlie7 DNA MER1_type 466 642 -1970 1 1314 1197 43 0 0 chr11 95556404 95556545 -26287311 + B1_Mm SINE Alu 1 141 -6 1 1314 294 29 0 0 chr11 95556548 95556583 -26287273 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1314 272 338 32 78 chr11 95556583 95556614 -26287242 + Charlie7 DNA MER1_type 643 673 -1939 1 1314 359 221 12 0 chr11 95556671 95556757 -26287099 + ID_B1 SINE B4 121 207 -17 1 1314 497 325 65 38 chr11 95556758 95557020 -26286836 + B4A SINE B4 24 292 0 1 1314 269 208 0 14 chr11 95557035 95557108 -26286748 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1314 1171 109 23 0 chr11 95557158 95557332 -26286524 + B2_Mm1t SINE B2 2 179 -14 1 1314 323 67 368 37 chr11 95557379 95557485 -26286371 + B2_Mm2 SINE B2 47 187 -8 1 1314 775 132 139 0 chr11 95557513 95557642 -26286214 + B1_Mur2 SINE Alu 1 147 -2 1 1314 210 71 0 0 chr11 95558179 95558207 -26285649 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1314 915 240 20 0 chr11 95558262 95558462 -26285394 - Lx8 LINE L1 -709 6764 6561 1 1314 227 257 108 92 chr11 95560755 95560875 -26282981 - L2c LINE L2 -3 3384 3263 1 1314 315 0 0 0 chr11 95560983 95561018 -26282838 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1314 1152 62 0 7 chr11 95561912 95562052 -26281804 + B1_Mus1 SINE Alu 1 140 -8 1 1314 342 0 0 0 chr11 95562052 95562090 -26281766 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 1314 646 259 309 10 chr11 95562099 95562306 -26281550 + B4A SINE B4 9 277 -15 1 1314 1637 37 0 16 chr11 95562468 95562662 -26281194 + B2_Mm1a SINE B2 2 192 -1 1 1314 297 307 0 13 chr11 95563325 95563401 -26280455 + polypyrimidine Low_complexity Low_complexity 1 75 0 1 1314 3397 57 28 7 chr11 95563962 95564389 -26279467 - RLTR10C LTR ERVK 0 436 1 1 1314 192 158 0 0 chr11 95564619 95564657 -26279199 + CT-rich Low_complexity Low_complexity 3 40 0 1 1314 306 276 53 0 chr11 95564665 95564741 -26279115 - PB1 SINE Alu -47 80 1 1 1314 700 245 14 0 chr11 95564741 95564819 -26279037 - ID SINE ID -143 81 2 1 1314 231 36 0 0 chr11 95564825 95564853 -26279003 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1314 545 290 98 35 chr11 95565496 95565814 -26278042 - MLT1D LTR MaLR -156 349 12 1 1314 724 212 133 36 chr11 95565905 95566101 -26277755 + B3 SINE B2 2 216 0 1 1314 541 94 61 30 chr11 95566587 95566686 -26277170 - B1_Mus2 SINE Alu -1 146 45 1 1314 547 212 9 0 chr11 95566689 95566802 -26277054 - B1F SINE Alu -35 114 1 1 1314 1202 48 7 0 chr11 95567068 95567214 -26276642 - B1_Mus1 SINE Alu -1 147 1 1 1314 358 228 43 0 chr11 95567281 95567373 -26276483 - MER53 DNA hAT 0 193 98 1 1314 359 277 10 21 chr11 95567760 95567856 -26276000 + PB1D10 SINE Alu 13 107 -10 1 1314 258 32 0 0 chr11 95568194 95568225 -26275631 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1 1314 725 170 7 0 chr11 95568229 95568370 -26275486 + CT-rich Low_complexity Low_complexity 3 144 0 1 1314 459 0 0 0 chr11 95568367 95568418 -26275438 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1314 254 193 0 81 chr11 95568437 95568499 -26275357 - B1_Mus2 SINE Alu -89 58 2 1 1314 249 247 33 66 chr11 95568499 95568535 -26275321 - ID SINE ID -141 83 51 1 1314 871 220 42 38 chr11 95568778 95568991 -26274865 - B3 SINE B2 0 216 3 1 1314 243 0 0 0 chr11 95569857 95569884 -26273972 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1314 21 36 0 0 chr11 95570064 95570092 -26273764 + AT_rich Low_complexity Low_complexity 1 28 0 1 1314 385 91 0 0 chr11 95570116 95570171 -26273685 - B2_Mm2 SINE B2 -94 101 47 1 1314 1156 89 12 0 chr11 95570206 95570374 -26273482 - B2_Mm1t SINE B2 -22 171 2 1 1314 481 175 0 104 chr11 95570618 95570733 -26273123 - PB1D9 SINE Alu -7 113 11 1 1314 442 169 458 13 chr11 95570755 95570899 -26272957 - B3 SINE B2 0 216 9 1 1314 1212 34 0 33 chr11 95571286 95571437 -26272419 + B1_Mus1 SINE Alu 2 147 -1 1 1314 687 156 241 18 chr11 95571492 95571662 -26272194 + B3 SINE B2 1 208 -8 1 1314 306 292 97 24 chr11 95571744 95571909 -26271947 + MIRc SINE MIR 38 214 -54 1 1314 681 250 31 0 chr11 95571912 95572072 -26271784 + RSINE1 SINE B4 1 165 0 1 1314 1084 38 68 0 chr11 95572113 95572245 -26271611 - B1_Mus1 SINE Alu -6 142 2 1 1314 22 0 0 0 chr11 95572245 95572267 -26271589 + AT_rich Low_complexity Low_complexity 1 22 0 1 1314 513 229 154 39 chr11 95572902 95573084 -26270772 + B3 SINE B2 2 204 -12 1 1314 321 26 0 0 chr11 95573088 95573126 -26270730 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1 1314 218 160 20 0 chr11 95573471 95573521 -26270335 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1314 200 252 24 31 chr11 95574177 95574304 -26269552 + (CCCG)n Simple_repeat Simple_repeat 1 126 0 1 1314 207 0 0 0 chr11 95574346 95574369 -26269487 + (CGG)n Simple_repeat Simple_repeat 3 25 0 1 1314 204 178 0 43 chr11 95574424 95574471 -26269385 + (CGCGG)n Simple_repeat Simple_repeat 4 48 0 1 1314 252 86 0 0 chr11 95574503 95574538 -26269318 + (CGG)n Simple_repeat Simple_repeat 3 37 0 1 1314 372 119 0 0 chr11 95575299 95575358 -26268498 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1314 240 111 0 0 chr11 95575648 95575684 -26268172 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1 1314 21 0 0 0 chr11 95576242 95576263 -26267593 + AT_rich Low_complexity Low_complexity 1 21 0 1 1314 955 225 19 24 chr11 95576274 95576479 -26267377 - B3 SINE B2 -5 211 8 1 1314 291 28 0 0 chr11 95576928 95576964 -26266892 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1314 198 91 0 0 chr11 95577928 95577961 -26265895 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 2 1314 270 315 94 45 chr11 95578355 95578579 -26265277 + MIRb SINE MIR 10 258 -10 2 1314 842 206 200 0 chr11 95578888 95579068 -26264788 + B3 SINE B2 1 216 0 2 1314 1155 75 7 0 chr11 95579481 95579627 -26264229 + B1_Mus2 SINE Alu 1 147 0 2 1314 723 129 158 24 chr11 95579719 95579846 -26264010 + B1_Mus1 SINE Alu 4 147 -1 2 1314 204 174 0 0 chr11 95579857 95579869 -26263987 + polypurine Low_complexity Low_complexity 2 13 0 2 1314 1363 80 36 21 chr11 95579869 95580061 -26263795 + B2_Mm2 SINE B2 1 195 0 2 1314 204 174 0 0 chr11 95580061 95580094 -26263762 + GA-rich Low_complexity Low_complexity 14 46 0 2 1314 234 0 0 0 chr11 95580674 95580700 -26263156 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1314 423 0 0 0 chr11 95580700 95580746 -26263110 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1314 221 188 124 150 chr11 95581169 95581282 -26262574 + B1_Mus2 SINE Alu 11 120 0 2 1314 704 226 0 0 chr11 95581450 95581587 -26262269 + ID_B1 SINE B4 88 224 0 2 1314 234 91 0 0 chr11 95581767 95581800 -26262056 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1314 1395 59 43 0 chr11 95581851 95582037 -26261819 + B2_Mm2 SINE B2 2 195 0 2 1314 580 120 74 0 chr11 95582121 95582229 -26261627 - B1F2 SINE Alu 0 149 34 2 1314 985 200 60 0 chr11 95582263 95582463 -26261393 - B3 SINE B2 0 216 5 2 1314 276 316 133 0 chr11 95582480 95582578 -26261278 - PB1 SINE Alu -16 111 1 2 1314 198 71 0 0 chr11 95582765 95582793 -26261063 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1314 1298 71 21 32 chr11 95582841 95583029 -26260827 - B2_Mm2 SINE B2 -8 187 2 2 1314 559 265 37 0 chr11 95583071 95583207 -26260649 + ID_B1 SINE B4 82 222 -2 2 1314 24 32 0 0 chr11 95583236 95583267 -26260589 + AT_rich Low_complexity Low_complexity 1 31 0 2 1314 804 109 150 25 chr11 95583267 95583427 -26260429 - B2_Mm2 SINE B2 -14 181 2 2 1314 828 192 27 0 chr11 95583430 95583576 -26260280 - B1_Mur4 SINE Alu 0 150 1 2 1314 1413 103 0 5 chr11 95583587 95583782 -26260074 - B2_Mm2 SINE B2 0 195 2 2 1314 1203 54 0 0 chr11 95583818 95583965 -26259891 - B1_Mus2 SINE Alu 0 147 1 2 1314 1233 47 0 7 chr11 95584192 95584341 -26259515 - B1_Mus1 SINE Alu 0 148 1 2 1314 261 284 20 69 chr11 95584447 95584549 -26259307 + MER20 DNA MER1_type 5 101 -118 2 1314 245 281 77 82 chr11 95584749 95584812 -26259044 - MT2B LTR ERVL -274 327 203 2 1314 315 210 86 21 chr11 95584812 95584905 -26258951 - B1_Mus1 SINE Alu -7 113 15 2 1314 245 281 77 82 chr11 95584905 95584931 -26258925 - MT2B LTR ERVL -274 202 147 2 1314 1060 175 80 5 chr11 95584953 95585154 -26258702 + B3 SINE B2 1 216 0 2 1314 685 211 82 82 chr11 95585283 95585479 -26258377 + B3A SINE B2 2 197 -1 2 1314 472 272 11 97 chr11 95585737 95585912 -26257944 - RSINE1 SINE B4 0 165 6 2 1314 647 306 130 8 chr11 95586530 95586883 -26256973 - L1ME2 LINE L1 -76 6088 5693 2 1314 336 196 142 38 chr11 95586968 95587074 -26256782 - PB1D7 SINE Alu -1 119 3 2 1314 210 154 0 0 chr11 95587192 95587231 -26256625 + T-rich Low_complexity Low_complexity 1 39 0 2 1314 246 255 0 0 chr11 95587876 95587923 -26255933 + PB1 SINE Alu 78 124 -3 2 1314 285 200 108 0 chr11 95587926 95587991 -26255865 + ID4 SINE ID 2 73 -10 2 1314 322 119 269 0 chr11 95588207 95588274 -26255582 + PB1D7 SINE Alu 19 103 -17 2 1314 210 91 0 0 chr11 95588281 95588314 -26255542 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 2 1314 38 0 0 0 chr11 95589137 95589175 -26254681 + AT_rich Low_complexity Low_complexity 1 38 0 2 1314 954 215 15 29 chr11 95589341 95589547 -26254309 - B3 SINE B2 -10 206 4 2 1314 1412 45 62 0 chr11 95589560 95589739 -26254117 - B2_Mm2 SINE B2 -4 191 2 2 1314 25 0 0 0 chr11 95589747 95589772 -26254084 + AT_rich Low_complexity Low_complexity 1 25 0 2 1314 321 107 154 39 chr11 95589807 95589885 -26253971 - B1_Mur4 SINE Alu -43 107 21 2 1314 948 145 0 14 chr11 95589892 95590039 -26253817 + B1_Mus1 SINE Alu 1 145 -3 2 1314 385 240 9 88 chr11 95590258 95590372 -26253484 + PB1D9 SINE Alu 11 115 -5 2 1314 1007 251 0 22 chr11 95590566 95590790 -26253066 + ID_B1 SINE B4 5 223 -1 2 1314 548 211 32 0 chr11 95590842 95590965 -26252891 + B1_Mur1 SINE Alu 22 148 -1 2 1314 659 274 92 24 chr11 95591076 95591412 -26252444 - L1MC5 LINE L1 -497 7464 7106 2 1314 353 260 90 0 chr11 95591413 95591513 -26252343 + PB1D10 SINE Alu 1 109 -8 2 1314 941 240 29 81 chr11 95591750 95592058 -26251798 - B4 SINE B4 0 292 1 2 1314 489 316 0 7 chr11 95592326 95592463 -26251393 + ID_B1 SINE B4 82 217 -7 2 1314 341 263 193 0 chr11 95592507 95592621 -26251235 + B1F SINE Alu 7 142 -7 2 1314 498 190 0 0 chr11 95592632 95592711 -26251145 + B3A SINE B2 2 80 -118 2 1314 240 372 31 31 chr11 95592711 95592729 -26251127 + RSINE1 SINE B4 3 99 -66 2 1314 1265 28 0 0 chr11 95592730 95592875 -26250981 + B1_Mus2 SINE Alu 1 145 -2 2 1314 1127 183 52 0 chr11 95592954 95593167 -26250689 - URR1B DNA MER1_type -1 224 1 2 1314 410 267 0 10 chr11 95593207 95593309 -26250547 - B1F2 SINE Alu -7 142 42 2 1314 531 112 0 0 chr11 95593312 95593401 -26250455 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 1314 29 0 0 0 chr11 95593407 95593436 -26250420 + AT_rich Low_complexity Low_complexity 1 29 0 2 1314 683 150 35 0 chr11 95593448 95593561 -26250295 - B3 SINE B2 -7 209 93 2 1314 294 285 25 83 chr11 95593799 95593822 -26250034 + B4A SINE B4 73 86 -206 2 1314 735 157 55 35 chr11 95593822 95593967 -26249889 + B1_Mus1 SINE Alu 1 148 0 2 1314 226 285 284 31 chr11 95594158 95594285 -26249571 + RSINE1 SINE B4 3 161 -4 2 1314 930 102 0 7 chr11 95594332 95594470 -26249386 - B1_Mus1 SINE Alu -11 137 1 2 1314 1506 43 27 0 chr11 95594570 95594758 -26249098 - B2_Mm1t SINE B2 0 193 1 2 1314 341 276 13 0 chr11 95595114 95595190 -26248666 + ID4 SINE ID 2 78 -5 2 1314 577 221 66 0 chr11 95595212 95595334 -26248522 + B3 SINE B2 5 134 -82 2 1314 299 315 51 59 chr11 95595379 95595497 -26248359 - B1_Mur1 SINE Alu -32 117 1 2 1314 2152 130 88 3 chr11 95596108 95596462 -26247394 - ORR1C2 LTR MaLR 0 384 1 2 1314 258 139 36 20 chr11 95596621 95596684 -26247172 - ORR1C2-int LTR MaLR -78 1502 1420 2 1314 24 32 0 0 chr11 95596916 95596947 -26246909 + AT_rich Low_complexity Low_complexity 1 31 0 2 1314 315 281 0 0 chr11 95597690 95597779 -26246077 + PB1D10 SINE Alu 27 115 -2 2 1314 6169 60 84 7 chr11 95597922 95599438 -26244418 - L1VL2 LINE L1 -1789 1826 177 2 1314 841 203 0 0 chr11 95599444 95599592 -26244264 - B1_Mur1 SINE Alu 0 149 2 2 1314 324 337 107 47 chr11 95599883 95600182 -26243674 - MLT1L LTR MaLR -118 492 176 2 1314 286 294 11 23 chr11 95600208 95600295 -26243561 + PB1D10 SINE Alu 1 86 -31 2 1314 260 301 70 47 chr11 95600218 95600347 -26243509 + ID_B1 SINE B4 93 224 0 2 1314 1170 62 0 27 chr11 95600457 95600607 -26243249 - B1_Mus2 SINE Alu -1 146 1 2 1314 1712 26 0 0 chr11 95600629 95600821 -26243035 - B2_Mm1a SINE B2 0 193 2 2 1314 259 226 0 0 chr11 95601118 95601180 -26242676 + B1_Mur2 SINE Alu 41 102 -47 2 1314 512 274 68 44 chr11 95601486 95601692 -26242164 + B3 SINE B2 1 211 -5 2 1314 216 135 0 0 chr11 95602368 95602405 -26241451 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2 1314 367 222 0 47 chr11 95602837 95602922 -26240934 - ID4_ SINE ID 0 83 3 2 1314 474 262 224 16 chr11 95602923 95602975 -26240881 - L1MB4 LINE L1 -16 6168 6099 2 1314 237 33 0 0 chr11 95602975 95603005 -26240851 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1314 474 262 224 16 chr11 95603005 95603114 -26240742 - L1MB4 LINE L1 -86 6098 5957 2 1314 387 0 0 0 chr11 95603114 95603157 -26240699 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1314 583 305 130 18 chr11 95603157 95603627 -26240229 - L1MB4 LINE L1 -228 5956 5432 2 1314 1744 106 81 26 chr11 95603632 95603942 -26239914 - MTB_Mm LTR MaLR 0 407 81 2 1314 23 0 0 0 chr11 95603943 95603966 -26239890 + AT_rich Low_complexity Low_complexity 1 23 0 2 1314 746 239 44 11 chr11 95603974 95604156 -26239700 - B3 SINE B2 -13 203 16 2 1314 599 223 40 25 chr11 95604181 95604379 -26239477 - L1MB4 LINE L1 -840 5306 5106 2 1314 320 266 32 11 chr11 95604439 95604534 -26239322 - MTEb LTR MaLR -66 313 217 2 1314 1398 254 186 16 chr11 95604653 95605137 -26238719 - MTEb-int LTR MaLR -7 1573 1008 2 1314 1010 232 188 3 chr11 95605228 95605569 -26238287 - MTEb-int LTR MaLR -929 651 248 2 1314 531 265 85 55 chr11 95605580 95605780 -26238076 - MTEb-int LTR MaLR -1373 207 2 2 1314 427 282 55 7 chr11 95605785 95605969 -26237887 - MTEb LTR MaLR 0 379 163 2 1314 357 43 0 0 chr11 95605985 95606032 -26237824 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1314 500 245 182 15 chr11 95606159 95606362 -26237494 - B4A SINE B4 0 292 56 2 1314 309 51 0 0 chr11 95607343 95607382 -26236474 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1314 306 284 34 11 chr11 95607390 95607479 -26236377 + B1F2 SINE Alu 8 98 -51 2 1314 607 250 8 0 chr11 95607477 95607605 -26236251 + ID_B1 SINE B4 27 155 -69 2 1314 758 239 0 26 chr11 95607648 95607837 -26236019 + B3 SINE B2 32 215 -1 2 1314 299 149 209 0 chr11 95607845 95607912 -26235944 + ID_B1 SINE B4 143 223 -1 2 1314 599 208 47 16 chr11 95607966 95608093 -26235763 + B1_Mur1 SINE Alu 2 132 -17 2 1314 215 314 40 48 chr11 95608257 95608381 -26235475 - ID_B1 SINE B4 -37 187 65 2 1314 515 195 25 8 chr11 95609222 95609341 -26234515 + B1_Mur2 SINE Alu 18 138 -11 3 1314 23 0 0 0 chr11 95609371 95609394 -26234462 + AT_rich Low_complexity Low_complexity 1 23 0 3 1314 237 108 0 0 chr11 95612638 95612675 -26231181 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1314 730 224 134 0 chr11 95612808 95612987 -26230869 + B3 SINE B2 3 205 -11 3 1314 522 286 0 16 chr11 95615440 95615561 -26228295 - PB1D7 SINE Alu 0 120 2 3 1314 404 283 19 0 chr11 95615702 95615808 -26228048 - PB1D7 SINE Alu -8 112 5 3 1314 244 159 267 47 chr11 95615840 95615926 -26227930 - PB1D7 SINE Alu 0 120 16 3 1314 412 180 0 0 chr11 95616396 95616457 -26227399 + B1_Mur2 SINE Alu 35 95 -54 3 1314 958 200 13 83 chr11 95616567 95616685 -26227171 - B3 SINE B2 -1 215 101 3 1314 1194 48 0 20 chr11 95616685 95616834 -26227022 - B1_Mus1 SINE Alu 0 148 3 3 1314 958 200 13 83 chr11 95616834 95616944 -26226912 - B3 SINE B2 -116 100 3 3 1314 24 0 0 0 chr11 95616947 95616971 -26226885 + AT_rich Low_complexity Low_complexity 1 24 0 3 1314 1006 223 20 0 chr11 95617165 95617367 -26226489 - B3 SINE B2 -9 207 2 3 1314 1174 74 0 0 chr11 95617548 95617696 -26226160 - B1_Mus1 SINE Alu 0 148 1 3 1314 336 283 101 38 chr11 95617742 95617900 -26225956 - L1M5 LINE L1 -346 5778 5611 3 1314 300 209 237 6 chr11 95618005 95618178 -26225678 - L1M5 LINE L1 -648 5476 5264 3 1314 750 181 57 21 chr11 95618262 95618403 -26225453 + B1_Mus2 SINE Alu 2 147 0 3 1314 1236 54 0 0 chr11 95618673 95618820 -26225036 + B1_Mus2 SINE Alu 1 147 0 3 1314 1205 95 6 0 chr11 95618839 95618997 -26224859 + B2_Mm1a SINE B2 2 160 -33 3 1314 264 77 0 0 chr11 95618997 95619036 -26224820 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 1314 237 301 51 51 chr11 95619116 95619214 -26224642 - L2c LINE L2 -8 3379 3282 3 1314 345 272 137 13 chr11 95619240 95619393 -26224463 - MIRb SINE MIR 0 268 97 3 1314 1174 151 23 55 chr11 95619644 95619862 -26223994 - B3 SINE B2 -4 212 2 3 1314 345 24 0 0 chr11 95619863 95619905 -26223951 + (TTGG)n Simple_repeat Simple_repeat 4 45 0 3 1314 280 312 0 12 chr11 95619906 95619987 -26223869 - ID4_ SINE ID -2 81 2 3 1314 409 288 77 89 chr11 95620125 95620293 -26223563 - MER104 DNA Tc2 -1 180 15 3 1314 26 0 0 0 chr11 95620294 95620320 -26223536 + AT_rich Low_complexity Low_complexity 1 26 0 3 1314 994 140 76 6 chr11 95620327 95620499 -26223357 + B2_Mm2 SINE B2 3 186 -9 3 1314 726 123 110 44 chr11 95620505 95620641 -26223215 + B1_Mur2 SINE Alu 5 149 0 3 1314 232 308 41 24 chr11 95621038 95621161 -26222695 - L2c LINE L2 -915 2504 2380 3 1314 1269 41 0 0 chr11 95621675 95621822 -26222034 + B1_Mus2 SINE Alu 1 147 0 3 1314 394 274 0 0 chr11 95622212 95622296 -26221560 + B1F SINE Alu 29 112 -37 3 1314 851 240 38 24 chr11 95622393 95622602 -26221254 + B3 SINE B2 5 216 0 3 1314 717 231 0 0 chr11 95622610 95622744 -26221112 + B1_Mur1 SINE Alu 2 135 -14 3 1314 189 107 0 0 chr11 95623151 95623179 -26220677 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 3 1314 289 260 50 40 chr11 95623179 95623279 -26220577 - L1ME4a LINE L1 -66 6058 5958 3 1314 436 291 135 0 chr11 95623506 95623647 -26220209 - RSINE1 SINE B4 -2 163 4 3 1314 597 270 0 14 chr11 95623675 95623814 -26220042 + ID_B1 SINE B4 80 216 -8 3 1314 344 290 50 10 chr11 95623837 95623938 -26219918 + PB1D10 SINE Alu 1 105 -12 3 1314 273 57 0 0 chr11 95623938 95623973 -26219883 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1314 209 276 100 20 chr11 95624450 95624550 -26219306 + MIR SINE MIR 139 246 -16 3 1314 248 185 170 80 chr11 95628249 95628349 -26215507 - PB1D10 SINE Alu -4 113 5 3 1314 352 266 40 53 chr11 95628384 95628535 -26215321 - B1F SINE Alu 0 149 1 3 1314 200 93 0 65 chr11 95628745 95628791 -26215065 + T-rich Low_complexity Low_complexity 2 44 0 3 1314 270 0 0 0 chr11 95629169 95629199 -26214657 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1314 189 0 0 0 chr11 95631047 95631068 -26212788 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1314 211 263 69 17 chr11 95633889 95633947 -26209909 - ID4_ SINE ID -14 69 9 3 1314 388 279 35 14 chr11 95633963 95634105 -26209751 - B1F1 SINE Alu -1 148 4 3 1314 281 274 123 9 chr11 95634493 95634607 -26209249 + PB1 SINE Alu 1 127 0 3 1314 356 81 40 13 chr11 95634968 95635043 -26208813 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 1314 445 206 0 40 chr11 95635049 95635150 -26208706 - B3A SINE B2 -36 162 66 3 1314 302 290 46 9 chr11 95635198 95635306 -26208550 - PB1D9 SINE Alu -8 112 1 3 1314 481 236 35 26 chr11 95635330 95635443 -26208413 - ID_B1 SINE B4 -27 197 84 3 1314 1209 43 0 0 chr11 95635523 95635663 -26208193 - B1_Mus2 SINE Alu -7 140 1 3 1314 559 231 43 0 chr11 95635794 95635911 -26207945 - B1F1 SINE Alu -1 148 27 3 1314 380 153 29 21 chr11 95635929 95636069 -26207787 + (TG)n Simple_repeat Simple_repeat 2 142 0 3 1314 1008 214 23 75 chr11 95636071 95636099 -26207757 - B4 SINE B4 0 292 270 3 1314 193 57 57 0 chr11 95636099 95636134 -26207722 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1314 1008 214 23 75 chr11 95636134 95636413 -26207443 - B4 SINE B4 -23 269 1 3 1314 259 254 0 0 chr11 95636421 95636480 -26207376 - MER112 DNA MER1_type -176 85 27 3 1314 230 319 0 55 chr11 95636797 95636870 -26206986 - tRNA-Ala-GCG tRNA tRNA -4 71 3 3 1314 304 292 0 0 chr11 95636805 95636877 -26206979 - ID4_ SINE ID -10 73 2 3 1314 785 167 28 7 chr11 95636920 95637065 -26206791 + B1_Mur2 SINE Alu 2 149 0 3 1314 621 308 68 43 chr11 95637199 95637477 -26206379 + B4A SINE B4 8 292 0 3 1314 334 268 0 24 chr11 95637475 95637563 -26206293 + ID_B1 SINE B4 73 155 -69 3 1314 307 280 27 107 chr11 95637503 95637564 -26206292 + B1F SINE Alu 15 78 -71 3 1314 1261 34 0 0 chr11 95637564 95637711 -26206145 + B1_Mm SINE Alu 1 147 0 3 1314 307 280 27 107 chr11 95637711 95637761 -26206095 + B1F SINE Alu 79 117 -32 3 1314 287 284 134 71 chr11 95637778 95638002 -26205854 + MLT1H2 LTR MaLR 227 464 -25 3 1314 717 112 42 33 chr11 95638108 95638228 -26205628 - B1_Mur3 SINE Alu -1 148 28 3 1314 839 127 65 65 chr11 95638580 95638748 -26205108 - URR1A DNA MER1_type 0 226 59 3 1314 538 242 8 8 chr11 95639109 95639230 -26204626 + ID_B1 SINE B4 104 224 0 3 1314 469 313 120 38 chr11 95639262 95639554 -26204302 + MLT1F1 LTR MaLR 221 536 -33 3 1314 237 203 254 0 chr11 95639591 95639650 -26204206 - ID4_ SINE ID -7 76 3 3 1314 364 191 0 0 chr11 95639664 95639727 -26204129 - B1F SINE Alu -8 141 79 3 1314 388 187 0 39 chr11 95639717 95639795 -26204061 + ID_B1 SINE B4 146 220 -4 3 1314 288 192 54 14 chr11 95639897 95639971 -26203885 + RSINE1 SINE B4 58 134 -31 3 1314 317 212 61 0 chr11 95640733 95640799 -26203057 + B1_Mus1 SINE Alu 22 91 -57 3 1314 802 190 122 44 chr11 95640801 95641005 -26202851 - URR1A DNA MER1_type -2 224 5 3 1314 388 131 0 62 chr11 95641007 95641072 -26202784 + B1_Mur2 SINE Alu 83 143 -6 3 1314 2023 53 0 0 chr11 95641107 95641376 -26202480 + L1Md_F2 LINE L1 6321 6582 0 3 1314 252 0 0 0 chr11 95641490 95641518 -26202338 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3 1314 531 161 97 0 chr11 95641572 95641665 -26202191 + B1F2 SINE Alu 35 136 -13 3 1314 317 43 21 0 chr11 95641665 95641712 -26202144 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1314 432 211 136 30 chr11 95641815 95641947 -26201909 - B1F2 SINE Alu -2 147 2 3 1314 1434 44 44 0 chr11 95642166 95642325 -26201531 + B2_Mm1a SINE B2 2 160 -33 3 1314 294 29 0 0 chr11 95642325 95642360 -26201496 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1314 1434 44 44 0 chr11 95642360 95642381 -26201475 + B2_Mm1a SINE B2 161 189 -4 3 1314 311 301 0 0 chr11 95642474 95642547 -26201309 + B4 SINE B4 12 84 -208 3 1314 2276 145 148 33 chr11 95642607 95643092 -26200764 - RMER19B LTR ERVK -13 889 349 3 1314 1106 167 7 190 chr11 95643104 95643378 -26200478 - RMER19B LTR ERVK -678 224 1 3 1314 319 241 51 0 chr11 95643378 95643457 -26200399 + B1F SINE Alu 12 94 -55 3 1314 349 308 75 0 chr11 95643462 95643582 -26200274 + RSINE1 SINE B4 1 129 -36 3 1314 264 170 0 0 chr11 95643627 95643680 -26200176 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1314 1500 50 16 0 chr11 95643728 95643910 -26199946 + B2_Mm2 SINE B2 1 185 -10 3 1314 595 225 33 86 chr11 95643945 95644096 -26199760 + B1_Mur3 SINE Alu 7 149 0 3 1314 694 255 41 61 chr11 95644096 95644292 -26199564 + B3 SINE B2 19 210 -6 3 1314 270 0 0 0 chr11 95644394 95644424 -26199432 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1314 587 206 66 44 chr11 95644424 95644555 -26199301 - B1_Mur1 SINE Alu -13 136 2 3 1314 489 240 6 39 chr11 95644633 95644751 -26199105 + PB1D10 SINE Alu 2 120 -29 3 1314 331 288 0 0 chr11 95644846 95644919 -26198937 + ID_B1 SINE B4 124 196 -28 3 1314 358 324 118 0 chr11 95644958 95645094 -26198762 - MLT1C LTR MaLR -125 342 191 3 1314 381 242 48 57 chr11 95645172 95645220 -26198636 - PB1 SINE Alu -4 123 77 3 1314 523 230 18 0 chr11 95645220 95645333 -26198523 - PB1D9 SINE Alu -5 115 1 3 1314 381 242 48 57 chr11 95645333 95645389 -26198467 - PB1 SINE Alu -51 76 20 3 1314 347 297 103 84 chr11 95645389 95645492 -26198364 - ID_B1 SINE B4 -50 174 8 3 1314 412 188 176 64 chr11 95645680 95645805 -26198051 + B1_Mm SINE Alu 9 147 0 3 1314 633 189 53 30 chr11 95645846 95645977 -26197879 - B1_Mur1 SINE Alu -15 134 1 3 1314 634 189 47 16 chr11 95646012 95646141 -26197715 + B1_Mus1 SINE Alu 7 139 -9 4 1314 325 172 17 0 chr11 95646141 95646199 -26197657 - PB1D10 SINE Alu -30 87 29 4 1314 378 355 96 16 chr11 95646286 95646297 -26197559 + MLT1F-int LTR MaLR 827 837 -652 4 1314 1377 53 5 50 chr11 95646297 95646495 -26197361 - B2_Mm2 SINE B2 -6 189 1 4 1314 378 323 192 26 chr11 95646495 95646836 -26197020 + MLT1F-int LTR MaLR 838 1236 -253 4 1314 239 299 15 15 chr11 95646908 95646976 -26196880 - PB1D10 SINE Alu -32 85 18 4 1314 289 354 39 8 chr11 95646981 95647109 -26196747 + MLT1F-int LTR MaLR 1254 1385 -104 4 1314 771 195 116 26 chr11 95647123 95647313 -26196543 - B3 SINE B2 -6 210 4 4 1314 1848 112 47 47 chr11 95648532 95648851 -26195005 + Lx4B LINE L1 6740 7058 0 4 1314 775 70 35 0 chr11 95648980 95649094 -26194762 - URR1B DNA MER1_type 0 225 108 4 1314 1246 58 9 137 chr11 95649092 95649131 -26194725 - B2_Mm2 SINE B2 -4 191 155 4 1314 1112 48 6 75 chr11 95649131 95649290 -26194566 + B1_Mus1 SINE Alu 1 148 0 4 1314 1246 58 9 137 chr11 95649290 95649469 -26194387 - B2_Mm2 SINE B2 -41 154 1 4 1314 414 170 309 0 chr11 95649471 95649565 -26194291 - URR1A DNA MER1_type -103 123 1 3 1314 1076 101 0 0 chr11 95649582 95649720 -26194136 + B1_Mur4 SINE Alu 1 138 -12 4 1314 655 174 0 0 chr11 95650227 95650336 -26193520 - B1_Mus1 SINE Alu -9 139 31 4 1314 252 277 19 105 chr11 95650258 95650363 -26193493 - RLTR25B LTR ERVK -521 507 412 4 1314 261 0 0 0 chr11 95650387 95650416 -26193440 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1314 327 368 9 0 chr11 95650422 95650528 -26193328 - RSINE1 SINE B4 -13 152 46 4 1314 405 208 65 103 chr11 95650547 95650654 -26193202 - PB1 SINE Alu -1 116 14 4 1314 237 258 9 110 chr11 95650562 95650671 -26193185 - ID_B1 SINE B4 -49 175 78 4 1314 841 139 27 34 chr11 95650674 95650823 -26193033 - B1_Mur4 SINE Alu -2 148 1 4 1314 370 198 105 53 chr11 95650828 95650961 -26192895 - ID_B1 SINE B4 -3 221 82 4 1314 330 265 57 49 chr11 95651226 95651349 -26192507 + RMER5 LTR ERV1 394 517 -17 4 1314 360 0 0 0 chr11 95651353 95651393 -26192463 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1314 479 254 35 42 chr11 95651416 95651560 -26192296 + RSINE1 SINE B4 21 163 -2 4 1314 360 0 0 0 chr11 95651561 95651601 -26192255 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1314 635 119 19 29 chr11 95651610 95651714 -26192142 - B1_Mur2 SINE Alu 0 149 47 4 1314 225 0 0 0 chr11 95652715 95652740 -26191116 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 4 1314 403 272 32 73 chr11 95652793 95652916 -26190940 - PB1D10 SINE Alu -29 120 3 4 1314 2409 153 42 15 chr11 95653592 95654002 -26189854 - MTC LTR MaLR 0 421 1 4 1314 524 217 28 0 chr11 95654198 95654304 -26189552 - PB1D10 SINE Alu -8 109 1 4 1314 181 326 55 55 chr11 95654352 95654443 -26189413 + L2c LINE L2 3273 3363 -24 4 1314 564 288 0 121 chr11 95654599 95654675 -26189181 + ID SINE ID 1 69 -155 4 1314 450 92 333 0 chr11 95654675 95654762 -26189094 - PB1D9 SINE Alu 0 120 5 4 1314 564 288 0 121 chr11 95654762 95654812 -26189044 + ID_B1 SINE B4 70 219 -5 4 1314 838 156 0 0 chr11 95654812 95654934 -26188922 + B1_Mus2 SINE Alu 21 142 -5 4 1314 1074 214 0 54 chr11 95654954 95655176 -26188680 - B3 SINE B2 -6 210 1 4 1314 476 318 73 0 chr11 95655178 95655329 -26188527 + ID_B1 SINE B4 51 212 -12 4 1314 487 274 96 7 chr11 95655962 95656098 -26187758 + B3A SINE B2 3 150 -48 4 1314 21 0 0 0 chr11 95656122 95656143 -26187713 + AT_rich Low_complexity Low_complexity 1 21 0 4 1314 354 260 91 0 chr11 95656266 95656343 -26187513 - RSINE1 SINE B4 -7 158 75 4 1314 867 140 52 0 chr11 95656481 95656617 -26187239 - B1_Mus2 SINE Alu 0 147 5 4 1314 643 289 155 7 chr11 95656698 95656915 -26186941 + ID_B1 SINE B4 1 247 -45 4 1314 209 51 0 114 chr11 95657270 95657314 -26186542 + T-rich Low_complexity Low_complexity 1 39 0 4 1314 228 305 92 31 chr11 95658839 95658937 -26184919 + MIR3 SINE MIR 105 208 0 4 1314 484 287 9 0 chr11 95659053 95659168 -26184688 + RSINE1 SINE B4 18 133 -32 4 1314 1032 156 0 0 chr11 95659198 95659378 -26184478 + GA-rich Low_complexity Low_complexity 1 180 0 4 1314 654 114 246 0 chr11 95659384 95659498 -26184358 + B1_Mus1 SINE Alu 1 142 -6 4 1314 730 259 7 53 chr11 95659498 95659712 -26184144 - B3A SINE B2 -2 214 10 4 1314 660 177 146 0 chr11 95659726 95659856 -26184000 - B1_Mur1 SINE Alu 0 149 1 4 1314 477 177 25 58 chr11 95659857 95659977 -26183879 + B4 SINE B4 104 219 -73 4 1314 645 221 71 0 chr11 95659986 95660113 -26183743 + B3 SINE B2 5 140 -76 4 1314 241 245 180 81 chr11 95660087 95660198 -26183658 + MT2B LTR ERVL 89 210 -391 4 1314 398 152 0 0 chr11 95660144 95660203 -26183653 + B1_Mur4 SINE Alu 1 59 -91 4 1314 398 276 6 33 chr11 95660214 95660394 -26183462 + GA-rich Low_complexity Low_complexity 3 177 0 4 1314 456 276 2 35 chr11 95660423 95660854 -26183002 + GA-rich Low_complexity Low_complexity 1 416 0 4 1314 909 151 0 63 chr11 95660621 95660812 -26183044 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 4 1314 1020 158 0 28 chr11 95660844 95661026 -26182830 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 4 1314 545 105 137 0 chr11 95661049 95661144 -26182712 + B1_Mur3 SINE Alu 42 149 0 4 1314 221 131 21 21 chr11 95661174 95661221 -26182635 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1314 244 208 38 0 chr11 95661303 95661356 -26182500 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 4 1314 21 0 0 0 chr11 95661427 95661448 -26182408 + AT_rich Low_complexity Low_complexity 1 21 0 4 1314 711 190 0 60 chr11 95661491 95661642 -26182214 - B1_Mur2 SINE Alu -3 146 5 4 1314 361 174 328 9 chr11 95661643 95661759 -26182097 - B3 SINE B2 -14 202 50 4 1314 655 252 22 0 chr11 95662188 95662327 -26181529 + B1F SINE Alu 7 148 -1 4 1314 861 132 36 29 chr11 95662349 95662489 -26181367 + B1_Mur1 SINE Alu 2 142 -7 4 1314 212 244 0 0 chr11 95662538 95662579 -26181277 + ID4 SINE ID 24 64 -19 4 1314 256 207 34 17 chr11 95662644 95662703 -26181153 + ID_B1 SINE B4 165 224 0 4 1314 404 305 16 33 chr11 95662711 95662833 -26181023 + RSINE1 SINE B4 5 124 -41 4 1314 549 30 0 0 chr11 95662833 95662900 -26180956 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1314 746 251 0 63 chr11 95662941 95663115 -26180741 - RSINE1 SINE B4 0 165 3 4 1314 1261 41 0 0 chr11 95663157 95663304 -26180552 - B1_Mus2 SINE Alu 0 147 1 4 1314 689 244 32 13 chr11 95663372 95663530 -26180326 - B3 SINE B2 -28 188 28 4 1314 363 95 151 29 chr11 95663527 95663641 -26180215 - B2_Mm2 SINE B2 0 195 48 4 1314 1243 102 11 6 chr11 95663687 95663864 -26179992 - B2_Mm1t SINE B2 -14 179 2 4 1314 1645 11 0 16 chr11 95664122 95664308 -26179548 + B2_Mm1t SINE B2 2 184 -9 4 1314 342 0 0 0 chr11 95664321 95664359 -26179497 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1314 468 267 122 0 chr11 95664360 95664491 -26179365 - RSINE1 SINE B4 -16 149 3 4 1314 1708 169 122 0 chr11 95664728 95665048 -26178808 + ORR1B2 LTR MaLR 1 359 -8 4 1314 3525 122 39 125 chr11 95665275 95666026 -26177830 + RMER6A LTR ERVK 57 742 -14 4 1314 191 262 137 80 chr11 95666277 95666549 -26177307 + L2a LINE L2 2871 3158 -268 4 1314 252 181 0 40 chr11 95667396 95667471 -26176385 + A-rich Low_complexity Low_complexity 2 73 0 4 1314 509 262 51 45 chr11 95667565 95667721 -26176135 + RSINE1 SINE B4 8 164 -1 4 1314 214 316 111 50 chr11 95667721 95667745 -26176111 + B3A SINE B2 7 197 -1 4 1314 1034 191 43 14 chr11 95667852 95668034 -26175822 + B3 SINE B2 3 193 -23 4 1314 2350 96 16 3 chr11 95668034 95668357 -26175499 - ORR1A2 LTR MaLR 0 327 1 4 1314 1034 191 43 14 chr11 95668357 95668381 -26175475 + B3 SINE B2 194 214 -2 4 1314 995 260 9 22 chr11 95668449 95668673 -26175183 + ID_B1 SINE B4 3 223 -1 4 1314 2254 149 52 6 chr11 95668961 95669325 -26174531 - ORR1C2 LTR MaLR -1 383 3 4 1314 194 266 162 18 chr11 95669454 95669565 -26174291 + MIRb SINE MIR 111 237 -31 4 1314 377 222 6 17 chr11 95670371 95670545 -26173311 + (TG)n Simple_repeat Simple_repeat 1 172 0 4 1314 506 211 4 23 chr11 95670561 95670823 -26173033 + (TG)n Simple_repeat Simple_repeat 1 256 0 4 1314 197 218 0 13 chr11 95670895 95670974 -26172882 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1314 208 324 36 18 chr11 95671186 95671296 -26172560 + L2c LINE L2 3267 3378 -9 4 1314 670 268 41 46 chr11 95671458 95671677 -26172179 - ID_B1 SINE B4 -2 222 5 4 1314 252 0 0 0 chr11 95672403 95672431 -26171425 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1314 476 260 50 38 chr11 95672635 95672795 -26171061 - RSINE1 SINE B4 -2 163 2 4 1314 287 236 117 11 chr11 95672881 95672975 -26170881 - PB1D10 SINE Alu -3 114 11 4 1314 216 298 18 0 chr11 95673388 95673445 -26170411 + PB1 SINE Alu 4 61 -66 4 1314 334 321 38 0 chr11 95673396 95673502 -26170354 + ID_B1 SINE B4 93 202 -22 4 1314 189 0 0 0 chr11 95674098 95674119 -26169737 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1314 945 106 0 0 chr11 95674119 95674251 -26169605 - B1_Mus1 SINE Alu -11 137 6 4 1314 328 304 59 0 chr11 95674339 95674441 -26169415 + PB1D10 SINE Alu 2 109 -8 4 1314 234 208 21 10 chr11 95674480 95674554 -26169302 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1314 2290 94 19 15 chr11 95674554 95674878 -26168978 - ORR1A2 LTR MaLR 0 327 3 4 1314 234 208 21 10 chr11 95674878 95674900 -26168956 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1314 788 188 228 6 chr11 95674931 95675102 -26168754 - B3 SINE B2 -6 210 2 4 1314 478 278 65 13 chr11 95675121 95675274 -26168582 - B3 SINE B2 -7 209 49 4 1314 653 156 139 0 chr11 95675336 95675458 -26168398 - B1_Mus1 SINE Alu -2 146 8 5 1314 1486 169 154 33 chr11 95675466 95675796 -26168060 - ORR1D1 LTR MaLR -4 370 1 5 1314 421 254 55 0 chr11 95675838 95675948 -26167908 - PB1D10 SINE Alu -1 116 1 5 1314 435 250 0 0 chr11 95675859 95675951 -26167905 - ID_B1 SINE B4 -54 170 79 5 1314 855 185 7 7 chr11 95676741 95676888 -26166968 - B1_Mur1 SINE Alu -1 148 2 5 1314 625 232 22 0 chr11 95676935 95677073 -26166783 - RSINE1 SINE B4 -12 153 13 5 1314 240 248 60 0 chr11 95677336 95677418 -26166438 - L2c LINE L2 -317 3070 2976 5 1314 251 91 23 0 chr11 95677585 95677629 -26166227 - MT2A LTR ERVL 0 533 489 5 1314 1130 146 62 0 chr11 95677657 95677835 -26166021 + B2_Mm2 SINE B2 1 189 -6 5 1314 949 139 15 0 chr11 95677835 95677971 -26165885 + B1_Mur4 SINE Alu 1 139 -11 5 1314 1087 197 35 78 chr11 95678058 95678145 -26165711 + RMER10B LTR ERVL 67 165 -233 5 1314 1399 76 0 47 chr11 95678145 95678338 -26165518 - B2_Mm2 SINE B2 -9 186 3 5 1314 1087 197 35 78 chr11 95678338 95678597 -26165259 + RMER10B LTR ERVL 166 398 0 5 1314 273 288 24 48 chr11 95678987 95679071 -26164785 - ID4_ SINE ID 0 83 2 5 1314 234 91 0 0 chr11 95679173 95679206 -26164650 + (TTA)n Simple_repeat Simple_repeat 1 33 0 5 1314 1384 82 22 0 chr11 95679219 95679401 -26164455 + B2_Mm2 SINE B2 2 187 -8 5 1314 297 0 0 0 chr11 95679432 95679465 -26164391 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 5 1314 539 195 230 0 chr11 95679483 95679596 -26164260 - B1_Mur4 SINE Alu -10 140 2 5 1314 609 178 0 18 chr11 95679598 95679700 -26164156 + PB1D9 SINE Alu 13 113 -7 5 1314 339 25 0 0 chr11 95679700 95679740 -26164116 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 1314 257 254 141 0 chr11 95679769 95679840 -26164016 - ID_B1 SINE B4 -63 161 81 5 1314 384 281 32 36 chr11 95679861 95679995 -26163861 - B1F SINE Alu 0 149 1 5 1314 857 157 116 66 chr11 95680121 95680319 -26163537 - B3 SINE B2 0 216 9 5 1314 292 218 85 49 chr11 95681055 95681137 -26162719 + MT2B LTR ERVL 173 257 -344 5 1314 649 167 0 34 chr11 95681068 95681186 -26162670 + B1_Mur4 SINE Alu 37 150 0 5 1314 658 223 36 0 chr11 95681190 95681329 -26162527 + B1_Mus2 SINE Alu 1 144 -3 5 1314 217 48 71 0 chr11 95681341 95681383 -26162473 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1314 401 286 0 51 chr11 95681454 95681572 -26162284 + ID_B1 SINE B4 104 215 -9 5 1314 333 102 0 0 chr11 95681572 95681631 -26162225 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1314 284 169 24 0 chr11 95681631 95681698 -26162158 + B1F1 SINE Alu 48 149 0 5 1314 916 169 202 6 chr11 95681797 95681975 -26161881 + B3 SINE B2 4 216 0 5 1314 519 281 87 73 chr11 95682004 95682223 -26161633 + ID_B1 SINE B4 2 223 -1 5 1314 317 261 11 21 chr11 95682271 95682365 -26161491 + PB1D10 SINE Alu 22 114 -3 5 1314 191 170 0 78 chr11 95682377 95682428 -26161428 + MIRc SINE MIR 47 93 -175 5 1315 207 309 133 49 chr11 95682649 95682792 -26161064 + MIRb SINE MIR 41 195 -73 5 1315 198 226 120 87 chr11 95682872 95682964 -26160892 + MIRc SINE MIR 35 129 -139 5 1315 527 271 24 99 chr11 95683278 95683491 -26160365 + B3A SINE B2 2 198 0 5 1315 521 167 219 0 chr11 95683761 95683875 -26159981 - B1_Mus1 SINE Alu 0 148 10 5 1315 746 196 0 34 chr11 95683978 95684126 -26159730 + B1_Mus1 SINE Alu 4 146 -2 5 1315 485 254 22 22 chr11 95684411 95684548 -26159308 + ID_B1 SINE B4 79 215 -9 5 1315 243 0 0 0 chr11 95686956 95686983 -26156873 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1315 611 108 29 0 chr11 95687215 95687317 -26156539 - B1_Mus2 SINE Alu -1 146 42 5 1315 989 198 0 19 chr11 95687321 95687624 -26156232 + (TCTCTG)n Simple_repeat Simple_repeat 1 297 0 5 1315 522 298 0 0 chr11 95687562 95687740 -26156116 + CT-rich Low_complexity Low_complexity 2 179 0 5 1315 246 174 0 42 chr11 95687827 95687875 -26155981 - ID_B1 SINE B4 -5 219 174 5 1315 608 203 32 0 chr11 95688055 95688178 -26155678 + B1_Mur1 SINE Alu 9 135 -14 5 1315 219 69 0 0 chr11 95689028 95689057 -26154799 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1315 192 294 41 61 chr11 95689544 95689642 -26154214 + MIRb SINE MIR 51 146 -122 5 1315 878 170 21 0 chr11 95689792 95689933 -26153923 - B1_Mur2 SINE Alu -1 148 5 5 1315 447 291 8 0 chr11 95690444 95690561 -26153295 + ID_B1 SINE B4 107 224 0 5 1315 180 125 0 0 chr11 95691829 95691861 -26151995 + (TCC)n Simple_repeat Simple_repeat 1 32 0 5 1315 235 309 24 12 chr11 95696354 95696436 -26147420 + ID4 SINE ID 1 83 0 5 1315 500 0 17 0 chr11 95696787 95696847 -26147009 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1315 265 277 0 118 chr11 95697343 95697357 -26146499 + RLTR25B LTR ERVK 428 534 -489 5 1315 599 147 0 56 chr11 95697357 95697465 -26146391 + B1_Mur1 SINE Alu 39 140 -9 5 1315 456 19 0 0 chr11 95698146 95698199 -26145657 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1315 604 215 31 62 chr11 95699166 95699347 -26144509 - ID_B1 SINE B4 -46 246 68 5 1315 261 0 0 0 chr11 95699347 95699376 -26144480 + (CTA)n Simple_repeat Simple_repeat 1 29 0 5 1315 831 132 93 0 chr11 95699378 95699507 -26144349 - B1_Mur4 SINE Alu -6 144 4 5 1315 207 288 76 54 chr11 95699517 95699697 -26144159 + L2a LINE L2 2929 3118 -308 5 1315 215 373 78 30 chr11 95699727 95699893 -26143963 + L2a LINE L2 3251 3424 -2 5 1315 254 274 34 56 chr11 95701170 95701259 -26142597 + B1F1 SINE Alu 10 96 -53 5 1315 824 149 13 0 chr11 95701269 95701423 -26142433 + GA-rich Low_complexity Low_complexity 3 158 0 5 1315 258 32 0 0 chr11 95701692 95701723 -26142133 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1315 555 260 20 27 chr11 95701803 95701953 -26141903 - B1F2 SINE Alu 0 149 1 5 1315 394 279 41 53 chr11 95701953 95701973 -26141883 - ID_B1 SINE B4 0 224 57 5 1315 306 0 0 0 chr11 95702414 95702448 -26141408 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1315 282 257 77 34 chr11 95702675 95702687 -26141169 + B4 SINE B4 77 93 -199 5 1315 494 186 58 17 chr11 95702687 95702807 -26141049 + B1F SINE Alu 2 126 -23 5 1315 351 227 27 0 chr11 95702803 95702878 -26140978 + B1_Mur4 SINE Alu 66 142 -8 5 1315 1014 209 39 19 chr11 95705401 95705606 -26138250 - B3 SINE B2 -4 212 4 5 1315 420 335 36 52 chr11 95705614 95705650 -26138206 - MIRb SINE MIR -65 203 176 5 1315 775 240 109 5 chr11 95705650 95705851 -26138005 + ID_B1 SINE B4 1 222 -2 5 1315 420 335 36 52 chr11 95705851 95706006 -26137850 - MIRb SINE MIR -93 175 15 5 1315 726 261 94 10 chr11 95707436 95707637 -26136219 + ID_B1 SINE B4 7 224 0 5 1315 294 95 0 0 chr11 95707693 95707735 -26136121 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1315 710 222 33 117 chr11 95708101 95708315 -26135541 + B3A SINE B2 3 198 0 5 1315 22 70 0 0 chr11 95708319 95708362 -26135494 + AT_rich Low_complexity Low_complexity 1 43 0 5 1315 473 250 21 42 chr11 95708362 95708504 -26135352 + B1F SINE Alu 5 143 -6 5 1315 2279 114 31 0 chr11 95708937 95709254 -26134602 - ORR1A2 LTR MaLR 0 327 1 5 1315 1568 176 82 45 chr11 95709347 95709703 -26134153 - ORR1C2 LTR MaLR -1 383 15 5 1315 361 272 117 0 chr11 95709730 95709833 -26134023 - PB1D9 SINE Alu -5 115 1 5 1315 1014 211 14 45 chr11 95709865 95710088 -26133768 - B3 SINE B2 0 216 1 5 1315 282 116 0 0 chr11 95710251 95710294 -26133562 + (CTTG)n Simple_repeat Simple_repeat 4 46 0 5 1315 387 284 10 10 chr11 95710295 95710398 -26133458 - PB1D7 SINE Alu -15 105 3 5 1315 360 325 166 10 chr11 95710610 95710815 -26133041 - MT2A LTR ERVL 0 533 297 5 1315 1508 72 22 13 chr11 95710813 95710845 -26133011 - MTB LTR MaLR -173 227 198 5 1315 1124 89 0 14 chr11 95710845 95710993 -26132863 - B1_Mus2 SINE Alu 0 147 2 5 1315 1508 72 22 13 chr11 95710993 95711185 -26132671 - MTB LTR MaLR -203 197 1 5 1315 251 279 24 37 chr11 95711185 95711267 -26132589 - PB1D10 SINE Alu -30 87 7 5 1315 536 265 68 81 chr11 95711416 95711638 -26132218 + B4 SINE B4 1 219 -73 5 1315 757 194 0 7 chr11 95711501 95711641 -26132215 + B1_Mur2 SINE Alu 7 145 -4 5 1315 195 42 0 0 chr11 95711641 95711665 -26132191 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1315 299 155 9 28 chr11 95711957 95712063 -26131793 + (TTTG)n Simple_repeat Simple_repeat 1 104 0 5 1315 1198 88 0 0 chr11 95712065 95712213 -26131643 - B1_Mus1 SINE Alu 0 148 1 5 1315 489 196 36 29 chr11 95712289 95712426 -26131430 - L1MD3 LINE L1 -14 7981 7844 5 1315 541 273 0 14 chr11 95712431 95712576 -26131280 + B1F2 SINE Alu 5 147 -2 5 1315 309 328 69 0 chr11 95712584 95712700 -26131156 + RSINE1 SINE B4 2 125 -40 5 1315 441 0 0 0 chr11 95712747 95712796 -26131060 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1315 398 194 51 0 chr11 95712805 95712903 -26130953 - L1MD3 LINE L1 -135 7860 7758 5 1315 251 214 40 30 chr11 95713445 95713546 -26130310 + (CCCA)n Simple_repeat Simple_repeat 2 103 0 5 1315 253 323 0 127 chr11 95713945 95714055 -26129801 - PB1D7 SINE Alu -11 109 14 5 1315 895 162 0 21 chr11 95714283 95714428 -26129428 - B1_Mm SINE Alu -1 146 5 5 1315 463 221 78 26 chr11 95714431 95714547 -26129309 - B1F SINE Alu -2 147 26 5 1315 474 279 80 7 chr11 95714575 95714712 -26129144 + RSINE1 SINE B4 8 154 -11 5 1315 952 214 102 5 chr11 95714762 95714959 -26128897 - B3 SINE B2 0 216 1 6 1315 243 0 0 0 chr11 95715472 95715499 -26128357 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1315 931 153 0 40 chr11 95715499 95715641 -26128215 - B1_Mus1 SINE Alu -7 141 5 6 1315 684 222 0 59 chr11 95715646 95715799 -26128057 - B3 SINE B2 -71 145 2 6 1315 3436 36 43 7 chr11 95715928 95716349 -26127507 - RLTR10C LTR ERVK 0 436 1 6 1315 211 315 213 31 chr11 95716400 95716757 -26127099 - L3 LINE CR1 -21 4468 4047 6 1315 417 309 84 21 chr11 95716868 95717010 -26126846 - RSINE1 SINE B4 -13 152 2 6 1315 444 279 70 0 chr11 95717010 95717137 -26126719 - ID_B1 SINE B4 -7 217 82 6 1315 1222 54 0 0 chr11 95717249 95717396 -26126460 - B1_Mus2 SINE Alu 0 147 1 6 1315 546 208 8 24 chr11 95717608 95717731 -26126125 - B1_Mur4 SINE Alu -2 148 28 6 1315 410 234 271 29 chr11 95717729 95717895 -26125961 - ID_B1 SINE B4 -6 218 13 6 1315 638 210 145 29 chr11 95717899 95717925 -26125931 - B3 SINE B2 -10 206 167 6 1315 303 28 0 0 chr11 95717925 95717961 -26125895 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1315 638 210 145 29 chr11 95717961 95718106 -26125750 - B3 SINE B2 -50 166 15 6 1315 198 103 0 0 chr11 95718525 95718554 -26125302 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1315 1034 38 0 0 chr11 95718554 95718685 -26125171 - B1_Mus1 SINE Alu 0 148 18 6 1315 499 255 49 7 chr11 95718766 95718908 -26124948 - B4 SINE B4 -141 151 4 6 1315 268 314 92 100 chr11 95719143 95719522 -26124334 - L1M5 LINE L1 -1060 5086 4711 6 1315 659 27 0 0 chr11 95720484 95720557 -26123299 - tRNA-Gln-CAA tRNA tRNA -2 73 1 6 1315 1937 199 97 2 chr11 95721502 95721915 -26121941 + RLTR18B LTR ERVK 30 481 -31 6 1315 1151 101 74 58 chr11 95722002 95722191 -26121665 - B2_Mm1a SINE B2 0 193 2 6 1315 31 92 0 0 chr11 95722297 95722384 -26121472 + AT_rich Low_complexity Low_complexity 1 87 0 6 1315 515 261 43 23 chr11 95722392 95722542 -26121314 - MT2A LTR ERVL -454 147 8 6 1315 324 0 0 0 chr11 95722632 95722668 -26121188 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1315 237 65 0 0 chr11 95722668 95722699 -26121157 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1315 297 172 0 0 chr11 95722701 95722765 -26121091 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1315 601 127 146 80 chr11 95723172 95723309 -26120547 + B1_Mur4 SINE Alu 4 149 -1 6 1315 1588 166 122 33 chr11 95723426 95723787 -26120069 - RMER10B LTR ERVL 0 398 6 6 1315 561 170 28 0 chr11 95723873 95723979 -26119877 + PB1D9 SINE Alu 1 109 -11 6 1315 189 121 0 0 chr11 95724027 95724060 -26119796 + (TCCCC)n Simple_repeat Simple_repeat 2 34 0 6 1315 235 118 17 121 chr11 95724071 95724129 -26119727 - B1_Mur2 SINE Alu -16 133 82 6 1315 1237 54 0 0 chr11 95724352 95724499 -26119357 + B1_Mm SINE Alu 1 147 0 6 1315 1300 226 276 15 chr11 95724778 95725177 -26118679 - RMER15 LTR ERVL 0 575 73 6 1315 276 300 63 91 chr11 95725338 95725376 -26118480 - B3A SINE B2 -59 139 1 6 1315 470 219 133 0 chr11 95725376 95725481 -26118375 - B4A SINE B4 -173 119 1 6 1315 213 39 0 0 chr11 95725500 95725526 -26118330 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1315 1080 116 28 44 chr11 95725719 95725900 -26117956 + B2_Mm1t SINE B2 2 179 -14 6 1315 192 77 0 0 chr11 95725986 95726012 -26117844 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1315 1237 48 0 0 chr11 95726084 95726231 -26117625 + B1_Mus2 SINE Alu 1 147 0 6 1315 1159 62 7 0 chr11 95726281 95726425 -26117431 + B2_Mm2 SINE B2 1 145 -50 6 1315 210 71 0 0 chr11 95726425 95726453 -26117403 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1315 474 280 40 8 chr11 95726473 95726599 -26117257 + B1F1 SINE Alu 1 130 -19 6 1315 592 231 82 34 chr11 95726641 95726847 -26117009 - B3 SINE B2 0 216 1 6 1315 363 225 75 0 chr11 95726858 95726938 -26116918 - PB1D10 SINE Alu -8 109 24 6 1315 231 337 31 42 chr11 95726872 95726968 -26116888 - ID_B1 SINE B4 -51 173 79 6 1315 875 138 14 14 chr11 95726993 95727140 -26116716 - B1_Mur4 SINE Alu -2 148 2 6 1315 561 80 68 0 chr11 95727141 95727229 -26116627 + RLTR28 LTR ERVL 417 510 -14 6 1315 1256 14 7 7 chr11 95728385 95728532 -26115324 + B1_Mm SINE Alu 1 147 0 6 1315 206 298 0 0 chr11 95728641 95728688 -26115168 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1315 618 185 8 32 chr11 95728778 95728901 -26114955 - PB1D7 SINE Alu 0 120 1 6 1315 1346 102 32 0 chr11 95728905 95729092 -26114764 - B2_Mm1t SINE B2 0 193 1 6 1315 981 167 122 25 chr11 95729126 95729323 -26114533 + B3 SINE B2 1 216 0 6 1315 21 0 0 0 chr11 95729329 95729350 -26114506 + AT_rich Low_complexity Low_complexity 1 21 0 6 1315 216 261 28 42 chr11 95729836 95729908 -26113948 + MER5B DNA MER1_type 33 103 -75 6 1315 180 123 16 66 chr11 95730396 95730457 -26113399 + (CACCC)n Simple_repeat Simple_repeat 3 60 0 6 1315 274 275 48 29 chr11 95730782 95730811 -26113045 - BC1_Mm scRNA scRNA -40 112 6 6 1315 296 253 53 13 chr11 95730811 95730887 -26112969 - ID SINE ID -140 84 6 6 1315 225 0 0 0 chr11 95730969 95730994 -26112862 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1315 462 292 48 52 chr11 95731382 95731653 -26112203 + B4A SINE B4 4 273 -19 6 1315 3457 181 208 24 chr11 95731690 95732496 -26111360 + RMER17B LTR ERVK 1 955 -3 6 1315 280 194 111 0 chr11 95732630 95732702 -26111154 + B3 SINE B2 20 99 -117 6 1315 1218 27 0 45 chr11 95732740 95732894 -26110962 + B1_Mm SINE Alu 1 147 0 6 1315 198 167 0 0 chr11 95732897 95732933 -26110923 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1315 366 319 164 12 chr11 95732969 95733140 -26110716 + L1MD LINE L1 3921 4117 -2029 6 1315 1148 251 15 23 chr11 95733177 95733380 -26110476 - ORR1C2 LTR MaLR 0 384 183 6 1315 495 0 0 0 chr11 95733380 95733435 -26110421 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1315 1148 251 15 23 chr11 95733435 95733492 -26110364 - ORR1C2 LTR MaLR -202 182 126 6 1315 246 247 0 88 chr11 95733469 95733549 -26110307 + B1_Mus1 SINE Alu 15 87 -61 6 1315 1376 99 10 10 chr11 95733634 95733828 -26110028 + B2_Mm2 SINE B2 2 195 0 6 1315 562 332 53 37 chr11 95733835 95734121 -26109735 + B4A SINE B4 1 270 -22 6 1315 180 228 0 0 chr11 95734146 95734203 -26109653 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1315 651 270 79 10 chr11 95734275 95734477 -26109379 + ID_B1 SINE B4 2 217 -7 6 1315 703 249 31 57 chr11 95734487 95734679 -26109177 + B3A SINE B2 2 188 -10 6 1315 1337 203 30 96 chr11 95734717 95735115 -26108741 - ORR1D1 LTR MaLR 0 374 3 6 1315 653 244 45 13 chr11 95735621 95735775 -26108081 - ID_B1 SINE B4 -51 173 15 6 1315 290 258 0 29 chr11 95735716 95735784 -26108072 - BC1_Mm scRNA scRNA -81 71 6 6 1315 655 284 21 0 chr11 95736052 95736193 -26107663 + RSINE1 SINE B4 2 145 -20 6 1315 407 309 9 0 chr11 95736269 95736379 -26107477 + PB1D10 SINE Alu 1 111 -6 6 1315 250 316 49 56 chr11 95736408 95736552 -26107304 + ID_B1 SINE B4 82 224 0 6 1315 483 312 114 10 chr11 95736552 95736753 -26107103 + ID_B1 SINE B4 3 224 0 6 1315 297 291 15 52 chr11 95737599 95737733 -26106123 - L1MB3 LINE L1 -72 6111 5983 6 1315 966 106 8 0 chr11 95737976 95738108 -26105748 + B1_Mur4 SINE Alu 1 133 -17 6 1315 687 25 0 0 chr11 95738114 95738195 -26105661 + (GA)n Simple_repeat Simple_repeat 2 82 0 6 1315 285 146 0 0 chr11 95738204 95738252 -26105604 + (TCC)n Simple_repeat Simple_repeat 2 49 0 6 1315 331 269 0 147 chr11 95738270 95738379 -26105477 - PB1 SINE Alu -18 109 17 6 1315 182 330 103 35 chr11 95738448 95738564 -26105292 + L2 LINE L2 2199 2322 -1097 6 1315 308 244 236 63 chr11 95738595 95738722 -26105134 + B1F2 SINE Alu 1 149 0 6 1315 1538 38 11 5 chr11 95738736 95738923 -26104933 + B2_Mm1t SINE B2 1 188 -5 6 1315 875 175 7 7 chr11 95738964 95739119 -26104737 + ORR1D1 LTR MaLR 1 155 -219 6 1315 839 64 9 0 chr11 95739119 95739229 -26104627 + B1_Mus2 SINE Alu 37 147 0 6 1315 721 202 109 14 chr11 95739246 95739307 -26104549 + ORR1D1 LTR MaLR 143 213 -161 6 1315 1053 73 7 0 chr11 95739307 95739443 -26104413 + B1_Mm SINE Alu 2 138 -9 6 1315 208 28 83 0 chr11 95739443 95739479 -26104377 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1315 721 202 109 14 chr11 95739479 95739627 -26104229 + ORR1D1 LTR MaLR 214 372 -2 6 1315 2637 150 30 10 chr11 95739628 95740085 -26103771 + ORR1D1-int LTR MaLR 1 471 -899 6 1315 768 214 121 0 chr11 95740083 95740256 -26103600 + MTD LTR MaLR 224 417 -2 6 1315 1303 75 23 0 chr11 95740751 95740925 -26102931 + B2_Mm2 SINE B2 1 178 -17 6 1315 385 131 321 45 chr11 95740975 95741087 -26102769 + B2_Mm1t SINE B2 48 190 -3 6 1315 203 57 0 28 chr11 95741801 95741813 -26102043 + (TG)n Simple_repeat Simple_repeat 2 13 0 6 1315 198 0 0 0 chr11 95741813 95741835 -26102021 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 1315 203 57 0 28 chr11 95741835 95741858 -26101998 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1315 267 31 0 0 chr11 95742031 95742063 -26101793 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1315 419 0 20 0 chr11 95742063 95742113 -26101743 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1315 3348 152 89 63 chr11 95742948 95743645 -26100211 - RMER6D LTR ERVK -5 715 1 6 1315 243 250 19 0 chr11 95743645 95743694 -26100162 + B3A SINE B2 97 146 -52 6 1315 213 219 0 0 chr11 95743692 95743733 -26100123 + ID4_ SINE ID 43 83 0 7 1315 22 0 0 0 chr11 95743733 95743755 -26100101 + AT_rich Low_complexity Low_complexity 1 22 0 7 1315 1470 70 37 0 chr11 95743763 95743950 -26099906 + B2_Mm2 SINE B2 1 194 -1 7 1315 566 219 159 60 chr11 95744595 95744847 -26099009 + B4A SINE B4 2 278 -14 7 1315 790 206 142 77 chr11 95745392 95745639 -26098217 + RLTR9C LTR ERVK 1 263 -130 7 1315 1111 122 18 0 chr11 95745624 95745788 -26098068 - B2_Mm2 SINE B2 -27 168 2 7 1315 836 129 16 86 chr11 95745788 95745971 -26097885 + RLTRETN_Mm LTR ERVK 153 322 0 7 1315 1387 217 95 34 chr11 95746257 95746614 -26097242 + MTE2a LTR MaLR 1 379 0 7 1315 736 253 29 23 chr11 95746664 95746838 -26097018 + ID_B1 SINE B4 1 175 -49 7 1315 983 204 29 15 chr11 95746859 95747063 -26096793 + Lx8 LINE L1 6907 7113 -360 7 1315 322 236 109 39 chr11 95747076 95747204 -26096652 + RLTR20A2 LTR ERVK 155 291 -277 7 1315 505 204 125 49 chr11 95747178 95747243 -26096613 + RLTR20A2 LTR ERVK 417 490 -88 7 1315 523 62 30 20 chr11 95747243 95747342 -26096514 + (TG)n Simple_repeat Simple_repeat 2 101 0 7 1315 505 204 125 49 chr11 95747342 95747420 -26096436 + RLTR20A2 LTR ERVK 491 570 -8 7 1315 1462 58 0 26 chr11 95747471 95747665 -26096191 + B2_Mm2 SINE B2 2 190 -5 7 1315 532 316 89 30 chr11 95747665 95747900 -26095956 + B4A SINE B4 36 284 -8 7 1315 243 182 15 29 chr11 95747931 95747999 -26095857 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 7 1315 381 296 30 20 chr11 95748670 95748770 -26095086 - PB1D10 SINE Alu -10 107 7 7 1315 432 318 54 0 chr11 95748865 95748994 -26094862 - RSINE1 SINE B4 -13 152 17 7 1315 1088 30 89 0 chr11 95749068 95749203 -26094653 + B1_Mm SINE Alu 1 147 0 7 1315 245 363 72 8 chr11 95749244 95749369 -26094487 + LTR89 LTR ERVL? 736 868 -11 7 1315 2445 148 49 54 chr11 95749375 95749952 -26093904 + RMER16 LTR ERVK 1 533 0 7 1315 660 135 181 8 chr11 95750365 95750492 -26093364 - B1_Mur4 SINE Alu -1 149 1 7 1315 1221 143 94 0 chr11 95750677 95750880 -26092976 + URR1B DNA MER1_type 4 225 0 7 1315 1252 27 7 0 chr11 95750899 95751045 -26092811 + B1_Mus2 SINE Alu 1 147 0 7 1315 207 0 0 0 chr11 95751045 95751068 -26092788 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1315 1551 32 0 40 chr11 95751087 95751285 -26092571 - B2_Mm1a SINE B2 -2 191 2 7 1315 593 243 8 19 chr11 95751289 95751431 -26092425 - PB1D10 SINE Alu 0 149 14 7 1315 467 232 0 0 chr11 95751534 95751616 -26092240 + ID4 SINE ID 2 83 0 7 1315 286 304 0 0 chr11 95751645 95751714 -26092142 + ID4_ SINE ID 15 83 0 7 1315 240 373 9 18 chr11 95751714 95751757 -26092099 + ID_B1 SINE B4 15 125 -99 7 1315 1175 130 10 15 chr11 95751880 95752076 -26091780 - B2_Mm2 SINE B2 0 195 1 7 1315 412 182 153 21 chr11 95752673 95752771 -26091085 - PB1D7 SINE Alu -2 125 17 7 1315 448 301 64 104 chr11 95753327 95753553 -26090303 + RSINE1 SINE B4 5 164 -1 7 1315 869 161 21 7 chr11 95753584 95753728 -26090128 - B1_Mur1 SINE Alu -1 148 3 7 1315 1420 88 0 15 chr11 95753741 95753938 -26089918 - B2_Mm2 SINE B2 0 195 2 7 1315 378 0 0 0 chr11 95754050 95754092 -26089764 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1315 445 200 87 29 chr11 95754102 95754205 -26089651 - B1_Mur3 SINE Alu -6 143 35 7 1315 357 82 0 0 chr11 95754205 95754254 -26089602 + (CCA)n Simple_repeat Simple_repeat 3 51 0 7 1315 405 121 0 0 chr11 95754436 95754494 -26089362 - B2_Mm1t SINE B2 -44 149 92 7 1315 1643 30 5 0 chr11 95754635 95754832 -26089024 - L1Md_T LINE L1 0 6582 6385 7 1315 1635 47 0 0 chr11 95754849 95755041 -26088815 - B2_Mm1a SINE B2 0 193 2 7 1315 618 275 83 51 chr11 95755087 95755340 -26088516 - RMER15 LTR ERVL -36 539 279 7 1315 1868 146 65 34 chr11 95755525 95755879 -26087977 - ORR1B2 LTR MaLR 0 367 3 7 1315 2867 156 45 36 chr11 95755881 95756440 -26087416 - ORR1B2-int LTR MaLR 0 1509 946 7 1315 799 292 88 71 chr11 95756440 95757444 -26086412 - MuLV-int LTR ERV1 -2651 5127 3982 7 1315 374 220 202 80 chr11 95758741 95758904 -26084952 - RLTR23 LTR ERV1 -1 429 247 7 1315 506 161 10 41 chr11 95759078 95759175 -26084681 - B3A SINE B2 -94 104 11 7 1315 321 162 29 14 chr11 95759233 95759302 -26084554 + ID2 SINE ID 5 74 -9 7 1315 1342 65 37 26 chr11 95759322 95759512 -26084344 + B2_Mm2 SINE B2 1 192 -3 7 1315 2001 64 32 48 chr11 95759672 95759730 -26084126 - MusHAL1 LINE L1 -1 2711 2666 7 1315 194 0 39 0 chr11 95759730 95759756 -26084100 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1315 958 98 38 0 chr11 95759756 95759888 -26083968 - B1_Mm SINE Alu -9 138 2 7 1315 2001 64 32 48 chr11 95759888 95760138 -26083718 - MusHAL1 LINE L1 -47 2665 2408 7 1315 406 189 311 0 chr11 95760147 95760253 -26083603 - B1F2 SINE Alu -6 143 5 7 1315 871 289 5 0 chr11 95760350 95760544 -26083312 + ID_B1 SINE B4 7 201 -23 7 1315 3092 142 64 83 chr11 95760544 95760672 -26083184 + RLTR18 LTR ERVK 1 124 -492 7 1315 1492 43 11 0 chr11 95760672 95760858 -26082998 - B2_Mm1t SINE B2 -4 189 2 7 1315 3092 142 64 83 chr11 95760858 95761138 -26082718 + RLTR18 LTR ERVK 125 402 -214 7 1315 3194 39 21 3 chr11 95761138 95761527 -26082329 - MTA_Mm LTR MaLR 0 396 1 7 1315 3092 142 64 83 chr11 95761527 95761741 -26082115 + RLTR18 LTR ERVK 403 612 -4 7 1315 1838 171 77 0 chr11 95761766 95762117 -26081739 - ORR1C1 LTR MaLR 0 378 1 7 1315 210 71 0 0 chr11 95762122 95762150 -26081706 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1315 905 106 27 53 chr11 95762227 95762377 -26081479 - B1_Mur4 SINE Alu 0 150 5 7 1315 575 232 61 44 chr11 95762452 95762632 -26081224 + B3A SINE B2 1 183 -15 7 1315 889 127 0 0 chr11 95762646 95762772 -26081084 + B1_Mus1 SINE Alu 17 142 -6 7 1315 333 47 0 0 chr11 95762918 95762961 -26080895 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1315 1146 36 14 0 chr11 95763150 95763289 -26080567 + B1_Mus1 SINE Alu 2 142 -6 7 1315 282 29 0 0 chr11 95763291 95763326 -26080530 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1315 200 35 35 0 chr11 95763333 95763362 -26080494 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 7 1315 409 356 0 0 chr11 95763380 95763529 -26080327 - RSINE1 SINE B4 -14 151 3 7 1315 229 266 15 15 chr11 95763567 95763632 -26080224 - ID_B1 SINE B4 -33 191 127 7 1315 306 305 0 0 chr11 95763726 95763808 -26080048 - ID4_ SINE ID -1 82 1 7 1315 1081 93 0 0 chr11 95764243 95764382 -26079474 + B1_Mus2 SINE Alu 2 140 -7 7 1315 848 190 22 18 chr11 95764451 95764624 -26079232 + B3 SINE B2 1 184 -9 7 1315 338 152 344 2 chr11 95764628 95764737 -26079119 - B2_Mm2 SINE B2 0 195 52 7 1315 1259 107 11 0 chr11 95764758 95764935 -26078921 - B2_Mm1t SINE B2 -14 179 1 7 1315 803 230 31 20 chr11 95764938 95765133 -26078723 - B3A SINE B2 -1 197 1 7 1315 2284 133 93 13 chr11 95765292 95765680 -26078176 - MTC LTR MaLR 0 421 3 7 1315 440 239 99 26 chr11 95765790 95765915 -26077941 + B1F SINE Alu 2 128 -21 7 1315 277 178 0 0 chr11 95765954 95765999 -26077857 + B3A SINE B2 1 45 -153 7 1315 252 0 0 0 chr11 95765999 95766027 -26077829 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1315 1217 55 0 0 chr11 95766034 95766180 -26077676 - B1_Mm SINE Alu 0 147 2 7 1315 1233 34 7 0 chr11 95766318 95766464 -26077392 + B1_Mus2 SINE Alu 1 147 0 7 1315 605 309 42 37 chr11 95766486 95766701 -26077155 + MTEa LTR MaLR 164 379 0 7 1315 354 264 17 83 chr11 95766752 95766872 -26076984 + PB1D9 SINE Alu 6 117 -3 7 1315 832 131 43 14 chr11 95766916 95767055 -26076801 - B1_Mur1 SINE Alu 0 149 7 7 1315 540 305 57 16 chr11 95767363 95767556 -26076300 + RMER15 LTR ERVL 353 553 -22 7 1315 1219 42 0 0 chr11 95767778 95767920 -26075936 + B1_Mus1 SINE Alu 2 143 -5 7 1315 3264 144 155 9 chr11 95768016 95768215 -26075641 - RMER6A LTR ERVK -8 748 504 7 1315 369 43 0 0 chr11 95768215 95768262 -26075594 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1315 3264 144 155 9 chr11 95768262 95768715 -26075141 - RMER6A LTR ERVK -253 503 3 7 1315 536 143 12 0 chr11 95769031 95769115 -26074741 + RMER10B LTR ERVL 314 398 0 7 1315 401 199 154 47 chr11 95769415 95769680 -26074176 + RMER10A LTR ERVL 5 337 -105 7 1315 228 35 0 0 chr11 95769680 95769709 -26074147 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 7 1315 354 351 27 0 chr11 95769888 95769999 -26073857 + PB1D10 SINE Alu 3 116 -1 7 1315 194 0 0 37 chr11 95770028 95770055 -26073801 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 7 1315 338 295 9 0 chr11 95770090 95770195 -26073661 + Charlie1a DNA MER1_type 1291 1396 -59 7 1315 770 190 20 27 chr11 95770225 95770371 -26073485 - B1_Mur2 SINE Alu 0 149 5 7 1315 431 235 58 8 chr11 95770465 95770585 -26073271 - RSINE1 SINE B4 -37 128 3 7 1315 252 0 0 0 chr11 95771293 95771321 -26072535 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1315 567 40 0 0 chr11 95771321 95771394 -26072462 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1315 261 103 14 29 chr11 95771575 95771645 -26072211 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 7 1315 1405 193 88 12 chr11 95771678 95772033 -26071823 + RMER20A LTR ERVK 91 515 -1 7 1315 366 277 129 43 chr11 95772257 95772390 -26071466 + B4A SINE B4 5 131 -161 7 1315 700 170 34 34 chr11 95772390 95772536 -26071320 + B1_Mur2 SINE Alu 3 148 -1 7 1315 326 262 89 138 chr11 95772536 95772733 -26071123 + B4 SINE B4 78 281 -11 7 1315 477 198 35 0 chr11 95772839 95772925 -26070931 + ID_B1 SINE B4 122 210 -14 7 1315 895 231 133 44 chr11 95773012 95773374 -26070482 + RMER17C LTR ERVK 1 394 -16 8 1315 263 124 12 23 chr11 95773703 95773767 -26070089 + B1_Mm SINE Alu 85 149 0 8 1315 183 42 0 0 chr11 95773769 95773793 -26070063 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1315 207 133 0 0 chr11 95773922 95773967 -26069889 + (A)n Simple_repeat Simple_repeat 1 45 0 8 1315 208 278 54 27 chr11 95774246 95774320 -26069536 + MIR SINE MIR 106 181 -81 8 1315 482 132 0 62 chr11 95774498 95774579 -26069277 - ID_B1 SINE B4 -1 223 148 8 1315 283 55 0 83 chr11 95774705 95774765 -26069091 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 8 1315 564 15 0 0 chr11 95775427 95775492 -26068364 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1315 256 176 39 0 chr11 95777436 95777487 -26066369 + ID_B1 SINE B4 129 181 -43 8 1315 321 208 52 0 chr11 95777519 95777596 -26066260 + L1_Rod LINE L1 5149 5229 -618 8 1315 623 139 9 0 chr11 95777632 95777747 -26066109 + (TTTTC)n Simple_repeat Simple_repeat 2 117 0 8 1315 201 340 0 21 chr11 95777776 95777872 -26065984 + GA-rich Low_complexity Low_complexity 4 97 0 8 1315 1268 52 12 0 chr11 95778166 95778338 -26065518 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 8 1315 359 247 61 20 chr11 95778505 95778604 -26065252 + RMER10A LTR ERVL 321 423 -19 8 1315 1478 64 11 0 chr11 95779095 95779283 -26064573 + B2_Mm1t SINE B2 1 190 -3 8 1315 734 55 303 0 chr11 95779283 95779391 -26064465 + B1_Mm SINE Alu 1 142 -5 8 1315 231 100 0 0 chr11 95779409 95779439 -26064417 - B2_Mm1a SINE B2 -37 156 127 8 1315 865 106 91 0 chr11 95779469 95779601 -26064255 - B2_Mm2 SINE B2 -49 146 3 8 1315 366 258 120 83 chr11 95780082 95780323 -26063533 + RMER2 LTR ERV1 291 540 -27 8 1315 858 161 0 14 chr11 95780720 95780859 -26062997 + B1_Mur4 SINE Alu 14 150 0 8 1315 608 181 117 29 chr11 95780873 95781010 -26062846 + B1_Mur3 SINE Alu 1 149 0 8 1315 189 0 0 0 chr11 95781011 95781032 -26062824 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 8 1315 322 207 12 35 chr11 95781135 95781220 -26062636 + RLTR42-int LTR ERVK 1690 1772 -3750 8 1315 399 290 87 37 chr11 95781193 95781354 -26062502 + RLTR42-int LTR ERVK 1696 1864 -3658 8 1315 549 233 139 0 chr11 95781500 95781629 -26062227 - ORR1C1 LTR MaLR 0 378 232 8 1315 377 215 12 12 chr11 95782033 95782113 -26061743 - B4 SINE B4 -212 80 1 8 1315 219 103 0 0 chr11 95782134 95782173 -26061683 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1315 599 232 9 0 chr11 95782173 95782285 -26061571 - B1_Mur1 SINE Alu -14 135 23 8 1315 638 168 0 10 chr11 95782286 95782388 -26061468 - B1_Mur4 SINE Alu -15 135 35 8 1315 468 167 339 8 chr11 95782419 95782540 -26061316 + U1 snRNA snRNA 5 165 0 8 1315 336 102 0 0 chr11 95782550 95782599 -26061257 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1315 962 105 250 23 chr11 95782616 95782792 -26061064 - B3 SINE B2 0 216 1 8 1315 198 0 0 0 chr11 95782836 95782858 -26060998 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 8 1315 282 306 0 101 chr11 95782860 95782969 -26060887 + MT2B LTR ERVL 167 264 -337 8 1315 691 208 8 0 chr11 95782878 95783003 -26060853 + B1_Mus1 SINE Alu 22 147 -1 8 1315 354 138 0 0 chr11 95783008 95783066 -26060790 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1315 202 105 51 26 chr11 95783066 95783105 -26060751 + GA-rich Low_complexity Low_complexity 4 43 0 8 1315 248 186 0 0 chr11 95783109 95783152 -26060704 + RLTR40 LTR ERVK 1 43 -774 8 1315 1030 164 114 9 chr11 95783152 95783379 -26060477 - RMER1A Other Other -13 1017 767 8 1315 1046 170 80 84 chr11 95783379 95783630 -26060226 + RLTR40 LTR ERVK 25 274 -543 8 1315 1804 216 64 15 chr11 95783644 95784049 -26059807 + RLTR40 LTR ERVK 386 810 -7 8 1315 310 89 0 0 chr11 95784094 95784139 -26059717 + ORR1A4 LTR MaLR 1 45 -284 8 1315 5871 86 12 16 chr11 95784139 95784607 -26059249 + RLTR22_Mus LTR ERVK 1 477 -1331 8 1315 2085 80 31 16 chr11 95784607 95784924 -26058932 - RLTRETN_Mm LTR ERVK 0 322 1 8 1315 5871 86 12 16 chr11 95784924 95785286 -26058570 + RLTR22_Mus LTR ERVK 478 828 -980 8 1315 525 270 44 70 chr11 95785510 95785737 -26058119 + RMER12 LTR ERVK 1102 1322 0 8 1315 1722 120 39 28 chr11 95785761 95786045 -26057811 + ORR1A4 LTR MaLR 43 329 0 8 1315 2410 78 0 12 chr11 95786244 95786567 -26057289 - ORR1A2 LTR MaLR -8 319 1 8 1315 1111 80 0 0 chr11 95786642 95786780 -26057076 + B1_Mus1 SINE Alu 1 138 -10 8 1315 441 204 33 66 chr11 95786812 95786933 -26056923 + PB1D9 SINE Alu 3 119 -1 8 1315 295 209 295 42 chr11 95786958 95787053 -26056803 + B1F SINE Alu 18 136 -13 8 1315 273 281 47 0 chr11 95787068 95787132 -26056724 + PB1D10 SINE Alu 22 88 -29 8 1315 570 141 16 28 chr11 95787137 95787319 -26056537 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 8 1315 432 277 17 8 chr11 95787547 95787667 -26056189 + RMER15 LTR ERVL 407 527 -48 8 1315 465 235 117 8 chr11 95787743 95787863 -26055993 - B1F1 SINE Alu -3 146 14 8 1315 646 254 49 33 chr11 95787859 95788042 -26055814 - B3 SINE B2 -30 186 1 8 1315 267 157 0 0 chr11 95788247 95788298 -26055558 + CT-rich Low_complexity Low_complexity 2 52 0 8 1315 493 270 43 71 chr11 95788300 95788555 -26055301 - L1M2 LINE L1 -1087 5056 4809 8 1315 302 295 0 16 chr11 95788590 95788652 -26055204 - Charlie12 DNA MER1_type -2806 67 7 8 1315 4288 121 87 6 chr11 95788720 95789402 -26054454 - RMER19A LTR ERVK 0 737 1 8 1315 192 152 0 0 chr11 95789456 95789489 -26054367 + (TGG)n Simple_repeat Simple_repeat 1 33 0 8 1315 311 299 30 30 chr11 95789493 95789593 -26054263 - L1M2 LINE L1 -1447 4696 4597 8 1315 288 77 0 0 chr11 95789609 95789648 -26054208 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1315 1264 40 0 0 chr11 95789648 95789796 -26054060 - B1_Mus1 SINE Alu 0 148 1 8 1315 408 343 7 85 chr11 95789829 95789982 -26053874 + ID_B1 SINE B4 82 222 -2 8 1315 1208 68 0 0 chr11 95790254 95790401 -26053455 + B1_Mus2 SINE Alu 1 147 0 8 1315 410 181 12 12 chr11 95790658 95790742 -26053114 - PB1D10 SINE Alu -29 88 5 8 1315 519 306 28 64 chr11 95790742 95790892 -26052964 - L1M2 LINE L1 -2006 4137 3984 8 1315 1766 128 2 176 chr11 95790892 95790981 -26052875 - ORR1A4 LTR MaLR 0 329 287 8 1315 1196 62 0 0 chr11 95790981 95791127 -26052729 - B1_Mm SINE Alu 0 147 2 8 1315 1766 128 2 176 chr11 95791127 95791435 -26052421 - ORR1A4 LTR MaLR -43 286 1 8 1315 519 306 28 64 chr11 95791435 95791567 -26052289 - L1M2 LINE L1 -2160 3983 3865 8 1315 828 80 0 0 chr11 95791574 95791687 -26052169 + (TTC)n Simple_repeat Simple_repeat 3 115 0 8 1315 3054 163 96 34 chr11 95791687 95792648 -26051208 + RLTR13D1 LTR ERVK 2 1023 0 8 1315 202 182 0 0 chr11 95792648 95792681 -26051175 + polypyrimidine Low_complexity Low_complexity 2 34 0 8 1315 1400 94 16 5 chr11 95792691 95792883 -26050973 - B2_Mm2 SINE B2 0 195 2 8 1315 409 274 0 0 chr11 95792883 95792978 -26050878 - L1M2 LINE L1 -2262 3881 3787 8 1315 278 254 0 16 chr11 95793011 95793075 -26050781 - ID4_ SINE ID -19 64 2 8 1315 4766 157 33 101 chr11 95793133 95793413 -26050443 + RMER19B LTR ERVK 1 272 -630 8 1315 1660 16 5 10 chr11 95793413 95793607 -26050249 - B2_Mm1a SINE B2 0 193 1 8 1315 4766 157 33 101 chr11 95793607 95794294 -26049562 + RMER19B LTR ERVK 273 902 0 8 1315 855 159 152 43 chr11 95794571 95794923 -26048933 + RMER6B LTR ERVK 1 452 -9 8 1315 515 72 313 26 chr11 95794923 95795038 -26048818 - B2_Mm2 SINE B2 -1 194 47 8 1315 1220 125 11 0 chr11 95795085 95795261 -26048595 - B2_Mm1t SINE B2 -14 179 2 8 1315 23 0 0 0 chr11 95795263 95795286 -26048570 + AT_rich Low_complexity Low_complexity 1 23 0 8 1315 4331 40 2 8 chr11 95795596 95796102 -26047754 - RLTR1C LTR ERV1 0 503 1 8 1315 2273 115 148 101 chr11 95796114 95796317 -26047539 + RLTR19A LTR ERVK 1 195 -301 8 1315 1524 57 5 10 chr11 95796317 95796512 -26047344 + B2_Mm2 SINE B2 2 195 0 8 1315 2273 115 148 101 chr11 95796512 95796782 -26047074 + RLTR19A LTR ERVK 196 496 0 8 1315 382 208 0 152 chr11 95796956 95796977 -26046879 + MT2B LTR ERVL 152 153 -448 8 1315 829 219 0 0 chr11 95796977 95797123 -26046733 + B1_Mur3 SINE Alu 1 146 -3 8 1315 1159 59 0 0 chr11 95797214 95797350 -26046506 + B1_Mus2 SINE Alu 3 138 -9 8 1315 285 62 11 81 chr11 95797361 95797448 -26046408 + A-rich Low_complexity Low_complexity 2 82 0 8 1315 636 336 18 27 chr11 95797493 95797713 -26046143 - B4A SINE B4 -20 272 55 8 1315 1445 170 28 45 chr11 95798071 95798360 -26045496 - RMER19B LTR ERVK 0 902 619 8 1315 329 164 0 0 chr11 95798359 95798414 -26045442 - RMER19B LTR ERVK -597 305 251 8 1315 714 24 0 0 chr11 95798414 95798498 -26045358 + (GAA)n Simple_repeat Simple_repeat 3 86 0 8 1315 297 0 0 0 chr11 95798498 95798531 -26045325 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 1315 495 202 0 96 chr11 95798531 95798646 -26045210 - B4A SINE B4 -28 264 161 8 1315 863 70 0 17 chr11 95798632 95798749 -26045107 + RLTR1B LTR ERV1 191 305 -207 8 1315 2105 39 4 0 chr11 95798748 95799004 -26044852 + RLTR1B LTR ERV1 256 512 0 8 1315 267 234 43 86 chr11 95799385 95799455 -26044401 + PB1D10 SINE Alu 15 81 -36 8 1315 795 190 198 16 chr11 95799567 95799749 -26044107 - B3 SINE B2 -1 215 1 8 1315 878 126 152 36 chr11 95799778 95799943 -26043913 + B2_Mm2 SINE B2 1 184 -11 8 1315 384 88 286 103 chr11 95799987 95800113 -26043743 + B2_Mm2 SINE B2 47 195 0 8 1315 420 169 67 0 chr11 95800335 95800424 -26043432 + ORR1D2 LTR MaLR 4 98 -272 8 1315 249 81 0 26 chr11 95800427 95800465 -26043391 + PB1D9 SINE Alu 84 120 0 8 1315 1000 75 37 0 chr11 95800466 95800600 -26043256 + B1_Mus1 SINE Alu 1 139 -9 8 1315 852 46 0 0 chr11 95800601 95800710 -26043146 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 8 1315 547 222 0 80 chr11 95800891 95800910 -26042946 - B3 SINE B2 0 216 199 8 1315 956 88 88 0 chr11 95800910 95801046 -26042810 - B1_Mus1 SINE Alu 0 148 1 8 1315 547 222 0 80 chr11 95801046 95801163 -26042693 - B3 SINE B2 -18 198 91 8 1315 484 114 0 14 chr11 95801166 95801237 -26042619 + RMER10A LTR ERVL 1 70 -372 8 1315 493 295 36 57 chr11 95801650 95801844 -26042012 - B4 SINE B4 -25 267 78 8 1315 307 60 40 0 chr11 95801860 95801910 -26041946 + (CCCCCA)n Simple_repeat Simple_repeat 6 57 0 9 1315 398 268 146 108 chr11 95801923 95802012 -26041844 + ID SINE ID 1 88 -136 9 1315 1128 59 0 0 chr11 95802012 95802148 -26041708 + B1_Mus2 SINE Alu 2 137 -10 9 1315 266 0 29 0 chr11 95802148 95802182 -26041674 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1315 398 268 146 108 chr11 95802182 95802304 -26041552 + ID_B1 SINE B4 89 220 -4 9 1315 405 306 47 13 chr11 95802315 95802464 -26041392 + RSINE1 SINE B4 5 158 -7 9 1315 489 198 30 40 chr11 95802632 95802732 -26041124 - B1F SINE Alu -50 99 1 9 1315 404 268 45 23 chr11 95802809 95802986 -26040870 - RMER4B LTR ERVK -14 571 343 9 1315 1456 83 5 0 chr11 95803016 95803208 -26040648 + B2_Mm1t SINE B2 1 193 0 9 1315 706 150 196 7 chr11 95803342 95803523 -26040333 - RMER4B LTR ERVK -202 264 54 9 1315 217 0 61 0 chr11 95803538 95803571 -26040285 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1315 1402 6 0 0 chr11 95803572 95803731 -26040125 - B2_Mm2 SINE B2 -34 161 3 9 1315 266 0 29 0 chr11 95803831 95803865 -26039991 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1315 2325 205 108 5 chr11 95803865 95804418 -26039438 + RMER19C LTR ERVK 2 611 0 9 1315 734 212 108 12 chr11 95804573 95804740 -26039116 - B3 SINE B2 -4 212 30 9 1315 862 179 14 0 chr11 95804740 95804885 -26038971 + B1_Mur3 SINE Alu 3 149 0 9 1315 205 254 18 0 chr11 95804910 95804965 -26038891 + CT-rich Low_complexity Low_complexity 5 60 0 9 1315 355 173 54 41 chr11 95804966 95805065 -26038791 - PB1D9 SINE Alu -7 113 27 9 1315 379 213 97 53 chr11 95805148 95805262 -26038594 - MLT1H LTR MaLR 0 549 431 9 1315 788 183 37 35 chr11 95805370 95805604 -26038252 + RMER19B LTR ERVK 1 183 -719 9 1315 379 162 13 51 chr11 95805604 95805662 -26038194 + ORR1A3 LTR MaLR 1 55 -272 9 1315 764 70 0 10 chr11 95805662 95805763 -26038093 + B2_Mm2 SINE B2 1 100 -95 9 1315 269 120 0 57 chr11 95805764 95805817 -26038039 + B2_Mm1t SINE B2 139 188 -5 9 1315 1691 104 50 32 chr11 95805812 95805851 -26038005 + ORR1A3 LTR MaLR 43 93 -233 9 1315 189 0 0 0 chr11 95805851 95805872 -26037984 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1315 1691 104 50 32 chr11 95805872 95806111 -26037745 + ORR1A3 LTR MaLR 94 326 0 9 1315 3452 155 102 28 chr11 95806115 95806784 -26037072 + RMER19B LTR ERVK 183 900 -2 9 1315 303 49 0 0 chr11 95806957 95806998 -26036858 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1315 579 161 53 18 chr11 95806998 95807112 -26036744 - B1_Mur3 SINE Alu -1 148 31 9 1315 467 319 97 97 chr11 95807280 95807589 -26036267 + MLT1H-int LTR MaLR 480 788 -621 9 1315 1195 60 7 0 chr11 95807685 95807834 -26036022 + B1_Mur4 SINE Alu 1 150 0 9 1315 439 221 120 69 chr11 95807925 95808100 -26035756 + B3A SINE B2 10 193 -5 9 1315 426 244 22 96 chr11 95808106 95808122 -26035734 + MT2B LTR ERVL 153 158 -443 9 1315 760 200 0 0 chr11 95808122 95808247 -26035609 + B1_Mus2 SINE Alu 1 125 -22 9 1315 312 319 92 21 chr11 95808129 95808249 -26035607 + B4A SINE B4 93 223 -69 9 1315 453 36 0 0 chr11 95808249 95808304 -26035552 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 1315 312 319 92 21 chr11 95808304 95808324 -26035532 + B4A SINE B4 224 243 -49 9 1315 22 0 0 0 chr11 95808332 95808354 -26035502 + AT_rich Low_complexity Low_complexity 1 22 0 9 1315 672 204 59 29 chr11 95808386 95808522 -26035334 - B1_Mur1 SINE Alu 0 149 10 9 1315 808 167 46 56 chr11 95808530 95808727 -26035129 - B2_Mm2 SINE B2 0 195 1 9 1315 4792 147 57 73 chr11 95808949 95809866 -26033990 - RMER19B LTR ERVK 0 902 1 9 1315 674 272 20 7 chr11 95809942 95810090 -26033766 + RSINE1 SINE B4 4 153 -12 9 1315 528 201 39 42 chr11 95810132 95810319 -26033537 + B3 SINE B2 2 189 -6 9 1315 584 214 98 8 chr11 95810320 95810452 -26033404 + B1_Mur1 SINE Alu 3 146 -3 9 1315 1537 91 32 5 chr11 95810608 95810828 -26033028 - MTC LTR MaLR 0 421 196 9 1315 345 167 31 10 chr11 95810828 95810847 -26033009 + polypyrimidine Low_complexity Low_complexity 81 99 0 9 1315 1337 63 6 11 chr11 95810847 95810865 -26032991 - B2_Mm2 SINE B2 -19 176 159 9 1315 186 43 0 0 chr11 95810865 95810888 -26032968 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 1315 1337 63 6 11 chr11 95810888 95811046 -26032810 - B2_Mm2 SINE B2 -37 158 1 9 1315 345 167 31 10 chr11 95811046 95811123 -26032733 + CT-rich Low_complexity Low_complexity 1 80 0 9 1315 1212 55 7 0 chr11 95811131 95811277 -26032579 - B1_Mus2 SINE Alu 0 147 1 9 1315 353 91 30 0 chr11 95811333 95811399 -26032457 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 9 1315 340 274 58 66 chr11 95811538 95811554 -26032302 - B4A SINE B4 -154 138 3 9 1315 649 176 0 58 chr11 95811554 95811675 -26032181 - B3A SINE B2 -82 116 3 9 1315 270 0 0 0 chr11 95811683 95811713 -26032143 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1315 1340 84 0 6 chr11 95811714 95811893 -26031963 - B2_Mm2 SINE B2 -15 180 3 9 1315 369 0 0 0 chr11 95811893 95811934 -26031922 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1315 671 273 74 83 chr11 95811935 95812151 -26031705 - ID_B1 SINE B4 -10 214 1 9 1315 230 206 115 64 chr11 95812233 95812246 -26031610 - ID_B1 SINE B4 -134 90 9 9 1315 240 206 123 31 chr11 95812246 95812311 -26031545 - ID4 SINE ID -4 79 9 9 1315 1261 112 32 0 chr11 95812496 95812683 -26031173 - B2_Mm1t SINE B2 0 193 1 9 1315 612 216 0 0 chr11 95812688 95812804 -26031052 - PB1D9 SINE Alu -3 117 2 9 1315 1405 80 16 0 chr11 95812974 95813162 -26030694 - B2_Mm1a SINE B2 -2 191 1 9 1315 822 262 15 0 chr11 95813166 95813372 -26030484 - B3 SINE B2 -3 213 5 9 164 1377 103 0 25 chr11 95813464 95813663 -26030193 - B2_Mm2 SINE B2 0 195 2 9 1316 246 109 0 52 chr11 95813667 95813725 -26030131 - B2_Mm2 SINE B2 -4 191 137 9 1316 1059 117 98 0 chr11 95813816 95813979 -26029877 - B2_Mm1t SINE B2 -14 179 1 9 1316 959 144 0 6 chr11 95813979 95814147 -26029709 + (TTTC)n Simple_repeat Simple_repeat 3 169 0 9 1316 569 62 0 24 chr11 95814147 95814209 -26029647 + (TTC)n Simple_repeat Simple_repeat 1 61 0 9 1316 405 0 0 0 chr11 95814209 95814254 -26029602 + (TC)n Simple_repeat Simple_repeat 2 46 0 9 1316 569 62 0 24 chr11 95814254 95814274 -26029582 + (TTC)n Simple_repeat Simple_repeat 2 21 0 9 1316 1207 62 0 0 chr11 95814275 95814421 -26029435 - B1_Mus2 SINE Alu 0 147 2 9 1316 566 251 126 35 chr11 95814664 95814862 -26028994 - B3 SINE B2 0 216 1 9 1316 635 245 7 14 chr11 95815094 95815239 -26028617 + B1_Mur2 SINE Alu 1 144 -5 9 1316 198 0 0 0 chr11 95815241 95815263 -26028593 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1316 299 260 41 0 chr11 95815264 95815337 -26028519 + ID4_ SINE ID 8 83 0 9 1316 995 207 131 90 chr11 95815450 95815739 -26028117 + ORR1C2 LTR MaLR 3 323 -61 9 1316 677 145 17 17 chr11 95815739 95815858 -26027998 - PB1D9 SINE Alu 0 120 2 9 1316 995 207 131 90 chr11 95815858 95815935 -26027921 + ORR1C2 LTR MaLR 324 384 0 9 1316 249 57 0 0 chr11 95816004 95816039 -26027817 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 9 1316 823 67 225 0 chr11 95816042 95816162 -26027694 - B1_Mm SINE Alu 0 147 1 9 1316 32 0 0 0 chr11 95816170 95816202 -26027654 + AT_rich Low_complexity Low_complexity 1 32 0 9 1316 752 206 43 0 chr11 95816203 95816344 -26027512 + B1_Mur2 SINE Alu 2 148 -1 9 1316 357 290 65 0 chr11 95816347 95816439 -26027417 + B3A SINE B2 1 99 -99 9 1316 384 183 24 0 chr11 95816439 95816521 -26027335 - URR1B DNA MER1_type -3 222 139 9 1316 573 159 158 8 chr11 95816517 95816644 -26027212 - ORR1B1 LTR MaLR -51 343 198 9 1316 304 104 0 0 chr11 95816657 95816705 -26027151 - URR1B DNA MER1_type -70 155 108 9 1316 1102 63 0 0 chr11 95816703 95816845 -26027011 - B1_Mus2 SINE Alu 0 147 6 9 1316 341 221 28 28 chr11 95816743 95816887 -26026969 - ORR1B1-int LTR MaLR -755 754 611 9 1316 601 168 43 26 chr11 95816882 95816998 -26026858 - URR1B DNA MER1_type -102 123 6 9 1316 335 239 162 18 chr11 95817054 95817085 -26026771 - B1_Mur2 SINE Alu -21 128 99 9 1316 1503 28 50 0 chr11 95817085 95817266 -26026590 + B2_Mm1a SINE B2 2 191 -2 9 1316 335 239 162 18 chr11 95817266 95817345 -26026511 - B1_Mur2 SINE Alu -51 98 3 9 1316 217 211 96 84 chr11 95817345 95817379 -26026477 - B4 SINE B4 -202 90 56 9 1316 348 284 31 21 chr11 95817493 95817590 -26026266 + B1_Mur2 SINE Alu 1 98 -51 9 1316 28 61 0 0 chr11 95819293 95819342 -26024514 + AT_rich Low_complexity Low_complexity 1 49 0 9 1316 253 279 0 37 chr11 95819823 95819905 -26023951 + G-rich Low_complexity Low_complexity 6 84 0 9 1316 234 105 0 0 chr11 95822995 95823033 -26020823 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1316 309 268 0 12 chr11 95824038 95824121 -26019735 - ID2 SINE ID 0 83 2 9 1316 986 84 63 0 chr11 95825283 95825426 -26018430 + B2_Mm2 SINE B2 42 193 -2 9 1316 1154 75 0 0 chr11 95825430 95825576 -26018280 + B1_Mm SINE Alu 2 147 0 9 1316 240 59 0 0 chr11 95825589 95825623 -26018233 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 9 1316 461 127 28 0 chr11 95825631 95825702 -26018154 + B2_Mm2 SINE B2 2 74 -121 9 1316 223 306 70 12 chr11 95825815 95825901 -26017955 + ID_B1 SINE B4 81 171 -53 9 1316 247 290 58 35 chr11 95825825 95825922 -26017934 + PB1D9 SINE Alu 10 111 -9 9 1316 1076 92 98 0 chr11 95826033 95826197 -26017659 + B2_Mm2 SINE B2 15 194 -1 9 1316 666 73 254 0 chr11 95826198 95826308 -26017548 + B1_Mus2 SINE Alu 9 146 -1 9 1316 274 295 37 28 chr11 95826775 95826883 -26016973 + B1F1 SINE Alu 1 109 -40 9 1316 219 293 52 0 chr11 95827068 95827126 -26016730 - RSINE1 SINE B4 -51 114 54 9 1316 628 124 144 16 chr11 95827153 95827287 -26016569 - B1_Mur3 SINE Alu 0 147 6 9 1316 369 0 0 0 chr11 95827665 95827706 -26016150 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1316 234 81 0 0 chr11 95827771 95827808 -26016048 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1316 347 287 89 0 chr11 95828296 95828397 -26015459 + B1F2 SINE Alu 30 139 -10 1 1316 195 129 0 0 chr11 95828644 95828675 -26015181 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 1 1316 225 316 220 8 chr11 95830296 95830414 -26013442 + B4A SINE B4 141 283 -9 1 1316 384 211 75 28 chr11 95830478 95830585 -26013271 + PB1D10 SINE Alu 1 112 -5 1 1316 669 260 142 0 chr11 95830864 95831033 -26012823 + B3 SINE B2 1 193 -23 1 1316 261 295 22 148 chr11 95832379 95832562 -26011294 + ID_B1 SINE B4 6 165 -59 1 1316 317 227 160 0 chr11 95832492 95832567 -26011289 + PB1 SINE Alu 14 100 -27 1 1316 1352 104 5 5 chr11 95832654 95832847 -26011009 + B2_Mm2 SINE B2 1 193 -2 1 1316 459 256 31 97 chr11 95832990 95833022 -26010834 - B3A SINE B2 -14 184 153 1 1316 927 86 22 28 chr11 95833022 95833202 -26010654 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1316 459 256 31 97 chr11 95833202 95833364 -26010492 - B3A SINE B2 -46 152 3 1 1316 279 0 0 0 chr11 95834296 95834327 -26009529 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1316 1192 82 0 0 chr11 95835797 95835944 -26007912 + B1_Mus2 SINE Alu 1 147 0 1 1316 423 52 0 0 chr11 95836784 95836842 -26007014 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1316 670 163 21 43 chr11 95837147 95837288 -26006568 - B2_Mm2 SINE B2 -6 189 52 1 1316 192 77 0 0 chr11 95837310 95837336 -26006520 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1 1316 299 239 83 14 chr11 95837336 95837408 -26006448 - ID4_ SINE ID -5 78 2 1 1316 368 244 0 0 chr11 95837412 95837490 -26006366 - B1F SINE Alu -7 142 65 1 1316 328 271 94 0 chr11 95837559 95837655 -26006201 + PB1D10 SINE Alu 13 117 0 1 1316 671 223 31 31 chr11 95837669 95837831 -26006025 + B3 SINE B2 9 170 -46 1 1316 313 250 0 0 chr11 95838096 95838164 -26005692 - RSINE1 SINE B4 -30 135 68 1 1316 1309 71 0 6 chr11 95838413 95838584 -26005272 + B2_Mm2 SINE B2 1 170 -25 1 1316 230 228 35 0 chr11 95838886 95838943 -26004913 + GA-rich Low_complexity Low_complexity 2 60 0 1 1316 765 180 246 17 chr11 95839481 95839656 -26004200 - B3 SINE B2 0 216 2 1 1316 740 187 36 0 chr11 95839712 95839851 -26004005 - B1_Mus2 SINE Alu -1 146 3 1 1316 220 204 95 114 chr11 95839861 95839896 -26003960 - B1F2 SINE Alu 0 149 122 1 1316 1109 118 16 21 chr11 95839896 95840087 -26003769 + B2_Mm2 SINE B2 3 192 -3 1 1316 220 204 95 114 chr11 95840087 95840156 -26003700 - B1F2 SINE Alu -28 121 48 1 1316 688 166 27 95 chr11 95840261 95840408 -26003448 + B1_Mur1 SINE Alu 2 138 -11 1 1316 370 323 6 42 chr11 95841145 95841313 -26002543 + ID_B1 SINE B4 63 224 0 1 1316 651 187 24 14 chr11 95841176 95841314 -26002542 + B1_Mur2 SINE Alu 10 148 -1 1 1316 301 262 35 23 chr11 95841526 95841612 -26002244 + B3A SINE B2 27 113 -85 1 1316 322 275 96 34 chr11 95841697 95841874 -26001982 - L2a LINE L2 0 3426 3239 1 1316 332 294 129 22 chr11 95841899 95842038 -26001818 + MIRb SINE MIR 77 230 -38 1 1316 821 235 49 0 chr11 95842399 95842582 -26001274 + B3 SINE B2 1 192 -24 1 1316 781 168 0 0 chr11 95842927 95843046 -26000810 + B1_Mm SINE Alu 23 141 -6 1 1316 265 304 58 94 chr11 95842931 95843069 -26000787 + B4A SINE B4 112 244 -48 1 1316 348 338 50 29 chr11 95843288 95843428 -26000428 + ID_B1 SINE B4 10 152 -72 1 1316 931 172 58 93 chr11 95844341 95844566 -25999290 + URR1B DNA MER1_type 1 217 -8 1 1316 358 233 208 0 chr11 95845469 95845589 -25998267 - B1_Mm SINE Alu -1 146 2 1 1316 279 273 12 49 chr11 95845718 95845799 -25998057 - ID_B1 SINE B4 -109 115 38 1 1316 268 185 7 79 chr11 95845827 95845903 -25997953 - PB1D7 SINE Alu 0 120 43 1 1316 1204 55 0 7 chr11 95845926 95846073 -25997783 + B1_Mus1 SINE Alu 1 146 -2 1 1316 600 243 83 62 chr11 95846135 95846328 -25997528 - B3 SINE B2 -6 210 14 1 1316 1336 70 47 0 chr11 95846414 95846586 -25997270 + B2_Mm2 SINE B2 2 181 -14 1 1316 419 74 380 0 chr11 95846633 95846741 -25997115 + B2_Mm2 SINE B2 47 195 0 1 1316 1451 98 0 5 chr11 95847063 95847258 -25996598 - B2_Mm2 SINE B2 0 195 2 1 1316 801 247 25 0 chr11 95847597 95847759 -25996097 + B3 SINE B2 46 211 -5 1 1316 409 181 28 0 chr11 95847757 95847829 -25996027 + PB1D9 SINE Alu 33 106 -14 1 1316 237 284 121 40 chr11 95847829 95847856 -25996000 + B4 SINE B4 118 224 -68 1 1316 296 269 21 41 chr11 95847992 95848089 -25995767 + RSINE1 SINE B4 71 165 0 1 1316 320 156 0 105 chr11 95848263 95848279 -25995577 + ID_B1 SINE B4 148 222 0 1 1316 551 29 0 0 chr11 95848279 95848347 -25995509 + B1_Mus2 SINE Alu 80 147 0 1 1316 195 129 0 0 chr11 95848350 95848381 -25995475 + (GAA)n Simple_repeat Simple_repeat 2 32 0 1 1316 799 158 65 0 chr11 95848557 95848696 -25995160 - B1_Mus1 SINE Alu 0 148 1 1 1316 372 288 148 33 chr11 95848845 95848967 -25994889 - RSINE1 SINE B4 -25 140 5 1 1316 374 226 30 79 chr11 95849331 95849432 -25994424 - B1F1 SINE Alu -45 104 9 1 1316 417 264 19 19 chr11 95850350 95850458 -25993398 - RSINE1 SINE B4 -20 145 38 1 1316 396 0 0 0 chr11 95850480 95850524 -25993332 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1316 182 268 288 16 chr11 95850754 95850879 -25992977 - MIR3 SINE MIR -25 183 25 1 1316 251 284 0 12 chr11 95852358 95852440 -25991416 + G-rich Low_complexity Low_complexity 3 83 0 1 1316 440 171 124 93 chr11 95853383 95853512 -25990344 + MT2B LTR ERVL 146 278 -323 1 1316 446 232 40 53 chr11 95853400 95853530 -25990326 + B4A SINE B4 94 218 -74 1 1316 293 0 0 26 chr11 95853530 95853568 -25990288 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1 1316 446 232 40 53 chr11 95853568 95853587 -25990269 + B4A SINE B4 219 240 -52 1 1316 211 194 0 0 chr11 95853737 95853773 -25990083 + GA-rich Low_complexity Low_complexity 3 38 0 1 1316 350 310 30 0 chr11 95854301 95854401 -25989455 - PB1D7 SINE Alu -11 109 7 1 1316 226 222 56 90 chr11 95854323 95854412 -25989444 - MT2B2 LTR ERVL -343 241 156 1 1316 386 198 67 25 chr11 95855377 95855496 -25988360 - B1F2 SINE Alu -9 140 17 1 1316 1000 171 58 5 chr11 95855541 95855746 -25988110 + B3 SINE B2 1 216 0 1 1316 289 179 35 18 chr11 95856917 95856974 -25986882 + B1F1 SINE Alu 90 147 -2 1 1316 280 149 114 43 chr11 95857447 95857517 -25986339 + B1_Mur4 SINE Alu 76 150 0 1 1316 1020 50 7 73 chr11 95857590 95857741 -25986115 - B1_Mus2 SINE Alu 0 147 7 1 1316 505 207 128 32 chr11 95857751 95857876 -25985980 - B1_Mur2 SINE Alu -12 137 1 1 1316 898 234 48 5 chr11 95858054 95858260 -25985596 + B3 SINE B2 1 215 -1 1 1316 228 273 20 188 chr11 95858300 95858449 -25985407 + MT2B LTR ERVL 134 257 -344 1 1316 492 249 0 8 chr11 95858348 95858472 -25985384 + PB1D9 SINE Alu 9 133 -16 1 1316 1066 89 143 0 chr11 95858538 95858706 -25985150 - B2_Mm1t SINE B2 -1 192 1 1 1316 1276 86 29 0 chr11 95859653 95859827 -25984029 + B2_Mm2 SINE B2 2 180 -15 1 1316 999 67 89 0 chr11 95859827 95859962 -25983894 + B1_Mus2 SINE Alu 1 147 0 1 1316 210 91 0 0 chr11 95859962 95859995 -25983861 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1316 1207 68 0 0 chr11 95860800 95860947 -25982909 + B1_Mus1 SINE Alu 2 148 0 1 1316 614 254 14 0 chr11 95861088 95861230 -25982626 + B1F SINE Alu 1 144 -5 1 1316 376 191 191 0 chr11 95861276 95861370 -25982486 - PB1D10 SINE Alu -5 112 1 1 1316 506 239 0 0 chr11 95862079 95862188 -25981668 - PB1D9 SINE Alu -2 118 10 1 1316 301 276 7 84 chr11 95862114 95862251 -25981605 - B4 SINE B4 -124 168 46 1 1316 225 0 0 0 chr11 95862721 95862746 -25981110 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1316 531 0 0 0 chr11 95862979 95863038 -25980818 + (CTG)n Simple_repeat Simple_repeat 3 61 0 1 1316 449 34 0 17 chr11 95863740 95863800 -25980056 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 1 1316 228 128 0 41 chr11 95864376 95864425 -25979431 + C-rich Low_complexity Low_complexity 1 47 0 1 1316 396 0 0 0 chr11 95864754 95864798 -25979058 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1316 30 0 0 0 chr11 95866060 95866090 -25977766 + GC_rich Low_complexity Low_complexity 1 30 0 1 1316 210 71 0 0 chr11 95866157 95866185 -25977671 + (CCG)n Simple_repeat Simple_repeat 3 30 0 1 1316 198 0 0 0 chr11 95866453 95866475 -25977381 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 1 1316 306 0 0 0 chr11 95866711 95866745 -25977111 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1316 187 229 0 0 chr11 95869530 95869565 -25974291 + MIR SINE MIR 209 243 -19 1 1316 250 130 21 42 chr11 95869536 95869584 -25974272 + L2a LINE L2 3373 3419 -7 1 1316 201 74 0 0 chr11 95870275 95870302 -25973554 + (CCCCCT)n Simple_repeat Simple_repeat 2 28 0 1 1316 654 13 0 0 chr11 95870702 95870777 -25973079 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 1 1316 1122 95 0 0 chr11 95870824 95870971 -25972885 + B1_Mus1 SINE Alu 2 148 0 1 1316 22 0 0 0 chr11 95872938 95872960 -25970896 + AT_rich Low_complexity Low_complexity 1 22 0 1 1316 23 0 0 0 chr11 95873213 95873236 -25970620 + AT_rich Low_complexity Low_complexity 1 23 0 1 1316 365 177 0 12 chr11 95873419 95873499 -25970357 + C-rich Low_complexity Low_complexity 5 83 0 1 1316 261 118 0 0 chr11 95873832 95873883 -25969973 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1316 1639 47 0 0 chr11 95874787 95874980 -25968876 + B2_Mm1a SINE B2 1 193 0 1 1316 842 186 14 7 chr11 95875021 95875167 -25968689 + B1_Mur2 SINE Alu 1 147 -2 1 1316 1068 80 73 0 chr11 95875193 95875330 -25968526 + B1_Mus2 SINE Alu 1 147 0 1 1316 1646 42 0 0 chr11 95875333 95875525 -25968331 + B2_Mm1t SINE B2 2 193 0 1 1316 246 279 10 79 chr11 95875647 95875748 -25968108 + MT2B LTR ERVL 171 264 -337 1 1316 467 230 0 0 chr11 95875675 95875762 -25968094 + B1_Mur2 SINE Alu 42 128 -21 1 1316 229 109 21 21 chr11 95875763 95875810 -25968046 + GA-rich Low_complexity Low_complexity 2 48 0 1 1316 1265 28 0 14 chr11 95875977 95876124 -25967732 - B1_Mus2 SINE Alu -2 145 1 1 1316 1247 48 0 0 chr11 95876199 95876346 -25967510 + B1_Mus2 SINE Alu 1 147 0 1 1316 29 60 0 0 chr11 95876346 95876396 -25967460 + AT_rich Low_complexity Low_complexity 1 50 0 1 1316 317 276 46 28 chr11 95876538 95876646 -25967210 + L1ME3B LINE L1 5896 6005 -235 1 1316 243 0 0 0 chr11 95876771 95876798 -25967058 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1316 476 271 31 47 chr11 95876860 95876988 -25966868 + ID_B1 SINE B4 79 204 -20 1 1316 703 171 41 0 chr11 95877853 95877976 -25965880 + B1_Mur2 SINE Alu 1 128 -21 1 1316 526 268 20 53 chr11 95878293 95878443 -25965413 + RSINE1 SINE B4 4 148 -17 1 1316 1034 123 0 14 chr11 95878482 95878630 -25965226 + B1_Mus2 SINE Alu 1 146 -1 1 1316 567 234 94 0 chr11 95878659 95878787 -25965069 + B1_Mur2 SINE Alu 2 141 -8 1 1316 285 29 0 0 chr11 95878801 95878835 -25965021 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1316 474 18 0 0 chr11 95878835 95878889 -25964967 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1316 204 111 0 0 chr11 95878998 95879034 -25964822 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 1 1316 322 297 169 11 chr11 95879045 95879229 -25964627 - ID_B1 SINE B4 -7 217 5 1 1316 486 0 0 0 chr11 95879784 95879838 -25964018 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1316 498 214 97 18 chr11 95879839 95879953 -25963903 - B1F SINE Alu -21 128 6 1 1316 360 111 0 0 chr11 95880140 95880203 -25963653 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1316 1003 72 0 41 chr11 95880413 95880558 -25963298 + B1_Mus1 SINE Alu 1 139 -9 1 1316 378 42 0 0 chr11 95880568 95880616 -25963240 + (CAAAA)n Simple_repeat Simple_repeat 1 48 0 1 1316 493 267 0 0 chr11 95880837 95880938 -25962918 + PB1D10 SINE Alu 10 110 -7 1 1316 722 161 40 34 chr11 95880945 95881093 -25962763 + B1F SINE Alu 1 149 0 1 1316 691 253 7 58 chr11 95881118 95881273 -25962583 + ID_B1 SINE B4 76 222 -2 1 1316 225 103 0 0 chr11 95881279 95881308 -25962548 + B1_Mus1 SINE Alu 3 31 -117 1 1316 1135 74 0 7 chr11 95881315 95881464 -25962392 + B2_Mm2 SINE B2 1 148 -47 1 1316 814 101 0 0 chr11 95881461 95881570 -25962286 + B1_Mus1 SINE Alu 39 147 -1 1 1316 344 119 17 0 chr11 95881570 95881629 -25962227 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 1 1316 26 30 0 0 chr11 95881641 95881674 -25962182 + AT_rich Low_complexity Low_complexity 1 33 0 1 1316 1068 62 7 52 chr11 95882425 95882579 -25961277 - B1_Mus2 SINE Alu 0 147 1 1 1316 224 59 29 0 chr11 95882918 95882952 -25960904 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1316 782 181 0 61 chr11 95882954 95882968 -25960888 - B1_Mus1 SINE Alu -1 147 137 1 1316 210 37 0 0 chr11 95882968 95882995 -25960861 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1316 782 181 0 61 chr11 95882995 95883127 -25960729 - B1_Mus1 SINE Alu -12 136 10 1 1316 531 45 0 0 chr11 95883143 95883209 -25960647 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1316 1148 62 0 14 chr11 95883209 95883347 -25960509 - B1_Mus1 SINE Alu -10 138 1 1 1316 966 98 0 22 chr11 95883374 95883509 -25960347 + B1_Mus1 SINE Alu 10 141 -7 1 1316 180 0 0 0 chr11 95883512 95883532 -25960324 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1316 839 245 50 20 chr11 95883558 95883758 -25960098 - B3 SINE B2 -10 206 1 1 1316 354 269 99 6 chr11 95883913 95884024 -25959832 - B1F SINE Alu 0 117 1 1 1316 319 273 237 0 chr11 95884058 95884189 -25959667 + ID_B1 SINE B4 19 180 -44 1 1316 516 132 0 0 chr11 95884201 95884284 -25959572 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1316 1070 94 12 13 chr11 95884284 95884850 -25959006 + (TG)n Simple_repeat Simple_repeat 1 565 0 1 1316 313 263 16 62 chr11 95884850 95884996 -25958860 + B3 SINE B2 33 214 -2 1 1316 198 0 0 0 chr11 95885002 95885024 -25958832 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1316 751 184 79 22 chr11 95885030 95885169 -25958687 + B1_Mus2 SINE Alu 1 147 0 1 1316 426 151 0 0 chr11 95885174 95885247 -25958609 + (TAAA)n Simple_repeat Simple_repeat 2 74 0 1 1316 234 93 36 36 chr11 95886794 95886850 -25957006 + G-rich Low_complexity Low_complexity 2 57 0 1 1316 1097 95 0 7 chr11 95886965 95887114 -25956742 + B1_Mus1 SINE Alu 1 148 0 1 1316 444 260 10 0 chr11 95887396 95887492 -25956364 + PB1D10 SINE Alu 2 98 -19 1 1316 372 43 0 0 chr11 95887634 95887680 -25956176 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1316 445 252 13 11 chr11 95887701 95887824 -25956032 - PB1D7 SINE Alu 0 149 21 1 1316 761 142 0 0 chr11 95888310 95888416 -25955440 - B3 SINE B2 -110 106 1 1 1316 324 21 0 60 chr11 95888436 95888486 -25955370 + RMER4B LTR ERVK 1 47 -538 1 1316 1158 76 7 0 chr11 95888487 95888632 -25955224 + B1_Mus1 SINE Alu 2 147 -1 1 1316 1189 116 30 41 chr11 95888680 95888877 -25954979 + B2_Mm2 SINE B2 1 195 0 1 1316 2185 200 20 106 chr11 95888879 95889203 -25954653 + RMER4B LTR ERVK 33 324 -261 1 1316 1178 81 0 0 chr11 95889203 95889351 -25954505 + B1_Mus1 SINE Alu 1 148 0 1 1316 2185 200 20 106 chr11 95889351 95889631 -25954225 + RMER4B LTR ERVK 325 585 0 1 1316 425 233 152 17 chr11 95890652 95890770 -25953086 + B1F2 SINE Alu 13 146 -3 1 1316 764 194 21 0 chr11 95891295 95891439 -25952417 + B1_Mur3 SINE Alu 3 149 0 1 1316 808 261 54 0 chr11 95891451 95891654 -25952202 + B3 SINE B2 3 216 0 1 1316 304 291 0 11 chr11 95891712 95891799 -25952057 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1316 361 240 0 50 chr11 95892384 95892485 -25951371 + PB1D10 SINE Alu 21 116 -1 1 1316 473 236 94 35 chr11 95892699 95892870 -25950986 + B3A SINE B2 2 182 -16 1 1316 1019 104 7 7 chr11 95892897 95893042 -25950814 + B1_Mm SINE Alu 2 146 -1 1 1316 216 103 0 25 chr11 95893047 95893087 -25950769 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1316 908 188 9 90 chr11 95893097 95893308 -25950548 + B2_Mm2 SINE B2 2 195 0 1 1316 231 36 0 0 chr11 95893460 95893488 -25950368 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1316 735 200 0 14 chr11 95893494 95893636 -25950220 + B1_Mur1 SINE Alu 5 144 -5 1 1316 183 80 0 0 chr11 95893636 95893661 -25950195 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 1 1316 180 0 0 0 chr11 95893698 95893718 -25950138 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1 1316 748 151 12 88 chr11 95893718 95893869 -25949987 - B1_Mur4 SINE Alu -8 142 2 1 1316 619 158 167 0 chr11 95893870 95893984 -25949872 + B1_Mm SINE Alu 13 145 -2 1 1316 1340 132 19 9 chr11 95893991 95894205 -25949651 + U3 snRNA snRNA 1 216 -1 1 1316 249 139 0 0 chr11 95894217 95894260 -25949596 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1316 1096 151 5 46 chr11 95894266 95894460 -25949396 + B2_Mm2 SINE B2 2 187 -8 1 1316 23 78 0 0 chr11 95894527 95894578 -25949278 + AT_rich Low_complexity Low_complexity 1 51 0 1 1316 770 272 29 14 chr11 95894588 95894797 -25949059 + B3 SINE B2 3 214 -2 1 1316 216 158 0 0 chr11 95894823 95894861 -25948995 + T-rich Low_complexity Low_complexity 1 38 0 1 1316 274 57 0 0 chr11 95894877 95894912 -25948944 - B1_Mur4 SINE Alu -115 35 1 1 1316 1163 75 0 0 chr11 95894928 95895075 -25948781 - B1_Mus1 SINE Alu 0 148 2 1 1316 488 171 0 47 chr11 95895481 95895567 -25948289 + B1_Mus2 SINE Alu 54 135 -12 1 1316 531 230 72 29 chr11 95895844 95895983 -25947873 + B1_Mur1 SINE Alu 5 149 0 1 1316 24 0 0 0 chr11 95896298 95896322 -25947534 + GC_rich Low_complexity Low_complexity 1 24 0 1 1316 297 263 13 0 chr11 95897055 95897131 -25946725 + ID4 SINE ID 5 81 -2 1 1316 868 137 7 27 chr11 95897187 95897337 -25946519 + B1_Mus1 SINE Alu 2 148 0 1 1316 1313 76 27 5 chr11 95897363 95897549 -25946307 - B2_Mm2 SINE B2 -4 191 2 1 1316 776 176 35 0 chr11 95897785 95897927 -25945929 - B1_Mur2 SINE Alu -1 148 2 1 1316 313 279 108 57 chr11 95897942 95898150 -25945706 - B4 SINE B4 -68 224 4 1 1316 1117 81 0 39 chr11 95898369 95898523 -25945333 - B1_Mus1 SINE Alu 0 148 1 1 1316 21 36 0 0 chr11 95898567 95898595 -25945261 + AT_rich Low_complexity Low_complexity 1 28 0 1 1316 441 292 63 21 chr11 95898595 95898784 -25945072 - B3A SINE B2 0 198 2 1 1316 1328 93 16 21 chr11 95898808 95898995 -25944861 - B2_Mm1t SINE B2 -7 186 1 1 1316 210 246 49 66 chr11 95899006 95899067 -25944789 - PB1D10 SINE Alu -21 96 37 1 1316 611 198 26 0 chr11 95899108 95899224 -25944632 - PB1D9 SINE Alu -1 119 1 1 1316 704 281 28 6 chr11 95899254 95899433 -25944423 + B3A SINE B2 1 183 -15 1 1316 278 185 13 20 chr11 95899471 95899544 -25944312 + B1_Mus1 SINE Alu 2 73 -44 1 1316 213 65 0 0 chr11 95899719 95899750 -25944106 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1316 911 101 49 21 chr11 95899752 95899894 -25943962 - B1_Mus1 SINE Alu 0 148 3 1 1316 588 242 20 20 chr11 95900100 95900252 -25943604 + ID_B1 SINE B4 71 222 -2 1 1316 686 219 59 7 chr11 95900335 95900487 -25943369 - RSINE1 SINE B4 -2 163 4 1 1316 1741 16 0 0 chr11 95901014 95901206 -25942650 + B2_Mm1a SINE B2 2 193 0 1 1316 1282 85 37 16 chr11 95901232 95901398 -25942458 + B2_Mm2 SINE B2 1 173 -22 1 1316 1147 69 0 27 chr11 95901398 95901547 -25942309 + B1_Mus2 SINE Alu 1 145 -2 1 1316 1282 85 37 16 chr11 95901547 95901571 -25942285 + B2_Mm2 SINE B2 174 195 0 1 1316 338 20 0 58 chr11 95901636 95901688 -25942168 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1316 31 0 0 0 chr11 95901735 95901766 -25942090 + AT_rich Low_complexity Low_complexity 1 31 0 1 1316 332 206 27 0 chr11 95901806 95901879 -25941977 - B3A SINE B2 -85 113 39 1 1316 476 236 38 0 chr11 95901904 95902010 -25941846 - PB1D9 SINE Alu -2 118 9 1 1316 271 250 222 24 chr11 95902010 95902036 -25941820 - ID_B1 SINE B4 -2 187 67 1 1316 1171 55 7 0 chr11 95902050 95902196 -25941660 - B1_Mus1 SINE Alu -1 147 1 1 1316 593 207 83 0 chr11 95902217 95902338 -25941518 - B3 SINE B2 -5 211 81 1 1316 515 226 25 25 chr11 95902379 95902497 -25941359 - ID_B1 SINE B4 -9 215 98 1 1316 252 311 64 64 chr11 95902497 95902520 -25941336 - B1_Mur4 SINE Alu -9 141 1 1 1316 377 154 0 15 chr11 95902566 95902632 -25941224 + RLTR15 LTR ERVK 295 359 0 1 1316 1645 36 0 15 chr11 95902700 95902896 -25940960 + B2_Mm1a SINE B2 1 193 0 1 1316 427 314 12 30 chr11 95903345 95903509 -25940347 + RSINE1 SINE B4 2 162 -3 1 1316 192 158 0 0 chr11 95903531 95903569 -25940287 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1 1316 1244 35 0 0 chr11 95903570 95903714 -25940142 - B1_Mm SINE Alu -2 145 2 1 1316 24 32 0 0 chr11 95903749 95903780 -25940076 + AT_rich Low_complexity Low_complexity 1 31 0 1 1316 1118 58 0 14 chr11 95903836 95903976 -25939880 + B1_Mm SINE Alu 1 138 -9 1 1316 361 234 96 0 chr11 95904010 95904104 -25939752 + B1F SINE Alu 46 148 -1 1 1316 234 321 194 36 chr11 95904104 95904119 -25939737 + B4 SINE B4 79 145 -147 1 1316 478 202 0 66 chr11 95904119 95904225 -25939631 + PB1D9 SINE Alu 17 115 -5 1 1316 234 321 194 36 chr11 95904225 95904243 -25939613 + B4 SINE B4 146 239 -53 1 1316 717 65 0 0 chr11 95904246 95904338 -25939518 + B1_Mm SINE Alu 56 147 0 1 1316 469 204 45 27 chr11 95904399 95904510 -25939346 - PB1D10 SINE Alu 0 117 5 1 1316 496 210 157 16 chr11 95904861 95904982 -25938874 + B1_Mus1 SINE Alu 4 141 -7 1 1316 233 214 196 0 chr11 95905007 95905063 -25938793 - B1F SINE Alu -13 136 70 1 1316 665 230 44 50 chr11 95905102 95905262 -25938594 - B3 SINE B2 -57 159 1 1 1316 1419 69 32 0 chr11 95905424 95905612 -25938244 - B2_Mm2 SINE B2 0 195 2 1 1316 736 177 76 8 chr11 95905729 95905860 -25937996 - B1_Mur2 SINE Alu -7 142 3 1 1316 245 352 0 32 chr11 95906299 95906393 -25937463 + MER102c DNA MER1_type 171 261 -70 1 1316 277 250 101 70 chr11 95906744 95906873 -25936983 - L2c LINE L2 -6 3381 3249 1 1316 1457 53 26 5 chr11 95907207 95907396 -25936460 - B2_Mm1t SINE B2 0 193 1 1 1316 191 229 42 0 chr11 95909165 95909213 -25934643 - MIRc SINE MIR -50 218 169 1 1316 24 32 0 0 chr11 95911999 95912030 -25931826 + AT_rich Low_complexity Low_complexity 1 31 0 1 1316 880 83 116 0 chr11 95912047 95912168 -25931688 - B1_Mus1 SINE Alu -13 135 1 1 1316 351 282 282 0 chr11 95912169 95912201 -25931655 - B3 SINE B2 -5 211 180 1 1316 254 51 0 49 chr11 95912201 95912242 -25931614 + (TATG)n Simple_repeat Simple_repeat 1 39 0 1 1316 351 282 282 0 chr11 95912242 95912372 -25931484 - B3 SINE B2 -37 179 4 1 1316 360 160 8 8 chr11 95912465 95912546 -25931310 - B2_Mm2 SINE B2 -135 81 1 1 1316 647 143 10 0 chr11 95913209 95913307 -25930549 - PB1D9 SINE Alu -13 107 9 1 1316 382 205 301 9 chr11 95913326 95913439 -25930417 + B1_Mus1 SINE Alu 2 147 -1 1 1316 198 265 0 0 chr11 95913451 95913519 -25930337 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1316 238 222 48 0 chr11 95913568 95913631 -25930225 + B1_Mm SINE Alu 82 147 0 1 1316 1262 87 47 42 chr11 95913643 95913835 -25930021 + B2_Mm2 SINE B2 1 193 -2 1 1316 601 99 11 0 chr11 95913841 95913957 -25929899 + B1_Mus2 SINE Alu 1 120 0 1 1316 673 315 65 5 chr11 95914199 95914412 -25929444 + B4A SINE B4 5 230 -62 1 1316 409 260 72 51 chr11 95914412 95914550 -25929306 + RSINE1 SINE B4 3 143 -22 1 1316 270 280 26 13 chr11 95914563 95914639 -25929217 + B4A SINE B4 208 284 -8 1 1316 324 0 0 0 chr11 95914676 95914712 -25929144 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1 1316 554 258 12 76 chr11 95914729 95914901 -25928955 + B3A SINE B2 38 198 0 1 1316 487 238 36 14 chr11 95914923 95915041 -25928815 + PB1D9 SINE Alu 13 126 -21 1 1316 667 207 25 8 chr11 95915052 95915174 -25928682 + B3 SINE B2 1 124 -92 1 1316 753 93 42 0 chr11 95915173 95915291 -25928565 - B1_Mus1 SINE Alu -24 124 2 1 1316 1708 26 0 0 chr11 95915331 95915522 -25928334 - B2_Mm1a SINE B2 -2 191 1 1 1316 1191 75 0 0 chr11 95915549 95915696 -25928160 + B1_Mus2 SINE Alu 1 147 0 1 1316 276 102 0 0 chr11 95915704 95915753 -25928103 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1316 451 255 13 65 chr11 95915754 95915772 -25928084 + ID_B1 SINE B4 72 218 -6 1 1316 758 190 7 0 chr11 95915772 95915909 -25927947 + B1_Mur2 SINE Alu 6 143 -6 1 1316 273 185 113 52 chr11 95916009 95916106 -25927750 + RLTR25B LTR ERVK 381 483 -545 1 1316 298 238 12 23 chr11 95916058 95916144 -25927712 + PB1D10 SINE Alu 33 117 0 1 1316 499 297 47 129 chr11 95916145 95916356 -25927500 + B4A SINE B4 2 202 -90 1 1316 1031 94 150 6 chr11 95916356 95916516 -25927340 + B2_Mm2 SINE B2 3 185 -10 1 1316 499 297 47 129 chr11 95916516 95916621 -25927235 + B4A SINE B4 203 292 0 1 1316 333 254 80 26 chr11 95916649 95916706 -25927150 + BC1_Mm scRNA scRNA 2 62 -90 1 1316 1695 26 0 10 chr11 95916706 95916901 -25926955 + B2_Mm1a SINE B2 1 193 0 1 1316 333 254 80 26 chr11 95916901 95916916 -25926940 + BC1_Mm scRNA scRNA 63 76 -76 1 1316 481 162 77 51 chr11 95916916 95917033 -25926823 + PB1D9 SINE Alu 1 120 0 1 1316 333 254 80 26 chr11 95917033 95917072 -25926784 + BC1_Mm scRNA scRNA 77 119 -33 1 1316 1377 100 11 0 chr11 95917655 95917845 -25926011 - B2_Mm1t SINE B2 0 193 2 1 1316 191 287 147 10 chr11 95918034 95918136 -25925720 + MIRb SINE MIR 123 238 -30 1 1316 804 264 5 30 chr11 95918323 95918522 -25925334 + B3A SINE B2 3 196 -2 1 1316 246 256 37 37 chr11 95918545 95918626 -25925230 + ID_B1 SINE B4 143 223 -1 1 1316 721 274 29 10 chr11 95918786 95918992 -25924864 + B3 SINE B2 1 210 -6 1 1316 631 210 78 21 chr11 95919127 95919268 -25924588 - B1_Mur1 SINE Alu 0 149 1 1 1316 1318 53 123 0 chr11 95919302 95919472 -25924384 + B2_Mm1a SINE B2 2 192 -1 1 1316 278 258 0 57 chr11 95920363 95920433 -25923423 - PB1D10 SINE Alu -8 109 44 1 1316 207 0 0 0 chr11 95920534 95920557 -25923299 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1 1316 488 207 0 22 chr11 95920557 95920646 -25923210 - B1_Mur2 SINE Alu -13 136 50 1 1316 603 74 0 0 chr11 95921339 95921420 -25922436 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1316 261 301 88 9 chr11 95921893 95922007 -25921849 - MER5A DNA MER1_type -1 188 66 1 1316 460 235 140 7 chr11 95922045 95922195 -25921661 + MER105 DNA DNA 34 203 -1 1 1316 369 58 0 0 chr11 95922915 95922967 -25920889 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1316 243 291 90 72 chr11 95924121 95924248 -25919608 + MIR3 SINE MIR 50 178 -30 1 1316 180 0 0 0 chr11 95926425 95926445 -25917411 + (CCG)n Simple_repeat Simple_repeat 2 21 0 1 1316 238 299 8 17 chr11 95926475 95926594 -25917262 + (CCG)n Simple_repeat Simple_repeat 3 120 0 1 1316 215 253 45 67 chr11 95927175 95927264 -25916592 - MIRm SINE MIR -3 273 187 1 1316 296 260 52 0 chr11 95927501 95927578 -25916278 - MER46C DNA MER2_type -101 237 157 1 1316 295 201 115 5 chr11 95927579 95927661 -25916195 - B1F SINE Alu -7 110 5 1 1316 324 191 86 99 chr11 95927779 95927930 -25915926 + B1F1 SINE Alu 1 149 0 1 1316 366 333 97 20 chr11 95928023 95928219 -25915637 - MIRb SINE MIR -5 263 53 1 1316 21 71 0 0 chr11 95928392 95928434 -25915422 + AT_rich Low_complexity Low_complexity 1 42 0 1 1316 1214 49 0 0 chr11 95928437 95928579 -25915277 + B1_Mus2 SINE Alu 3 144 -3 1 1316 652 200 0 23 chr11 95928604 95928732 -25915124 + B1_Mus1 SINE Alu 2 126 -22 1 1316 703 172 0 0 chr11 95928734 95928850 -25915006 - B1_Mus2 SINE Alu -31 116 1 1 1316 1168 69 0 0 chr11 95928886 95929031 -25914825 - B1_Mus2 SINE Alu -1 146 2 1 1316 1392 67 22 0 chr11 95930174 95930354 -25913502 - B2_Mm1a SINE B2 -8 185 2 1 1316 209 208 57 0 chr11 95930387 95930440 -25913416 + (CATA)n Simple_repeat Simple_repeat 3 58 0 1 1316 263 281 105 112 chr11 95930441 95930505 -25913351 - ID_B1 SINE B4 -5 219 144 1 1316 1445 63 16 10 chr11 95930505 95930698 -25913158 - B2_Mm2 SINE B2 0 195 2 1 1316 263 281 105 112 chr11 95930698 95930785 -25913071 - ID_B1 SINE B4 -81 143 69 1 1316 346 205 94 29 chr11 95930817 95930925 -25912931 + B4A SINE B4 2 104 -188 1 1316 431 260 106 0 chr11 95930931 95931035 -25912821 + B3A SINE B2 48 162 -36 1 1316 278 246 92 0 chr11 95931360 95931425 -25912431 - ID4 SINE ID -12 71 1 1 1316 650 242 146 31 chr11 95932109 95932403 -25911453 + RLTR15 LTR ERVK 1 328 -31 1 1316 1240 96 6 17 chr11 95932653 95932834 -25911022 - B2_Mm2 SINE B2 -15 180 2 1 1316 730 153 250 12 chr11 95932915 95933087 -25910769 + B3 SINE B2 1 213 -3 1 1316 249 252 275 8 chr11 95933111 95933231 -25910625 + B3 SINE B2 27 178 -38 1 1316 1236 54 0 0 chr11 95933474 95933621 -25910235 + B1_Mus1 SINE Alu 2 148 0 1 1316 335 235 75 38 chr11 95933960 95934066 -25909790 + PB1D9 SINE Alu 11 120 0 1 1316 203 0 37 0 chr11 95934070 95934097 -25909759 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 1 1316 216 0 0 0 chr11 95934310 95934334 -25909522 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1316 501 258 62 51 chr11 95935866 95936042 -25907814 - MER5B DNA MER1_type 0 178 1 1 1316 321 307 0 54 chr11 95937622 95937715 -25906141 + ID_B1 SINE B4 79 166 -58 1 1316 297 327 43 43 chr11 95937625 95937740 -25906116 + PB1D10 SINE Alu 1 115 -2 1 1316 216 270 66 26 chr11 95937825 95937901 -25905955 + B4 SINE B4 96 174 -118 1 1316 212 255 20 0 chr11 95937884 95937935 -25905921 + B1F SINE Alu 98 149 0 1 1316 1143 70 0 7 chr11 95937939 95938084 -25905772 + B1_Mus1 SINE Alu 2 145 -3 1 1316 299 256 11 44 chr11 95938176 95938266 -25905590 + L1M5 LINE L1 5549 5635 -489 1 1316 1140 62 7 7 chr11 95938382 95938529 -25905327 + B1_Mus1 SINE Alu 2 148 0 1 1316 491 227 55 0 chr11 95938574 95938684 -25905172 - PB1D9 SINE Alu 0 120 5 1 1316 224 236 22 22 chr11 95938727 95938796 -25905060 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 1 1316 1240 99 6 6 chr11 95938796 95938969 -25904887 + B2_Mm1a SINE B2 2 174 -19 1 1316 224 236 22 22 chr11 95938969 95938990 -25904866 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1316 871 236 42 0 chr11 95939017 95939208 -25904648 - B3 SINE B2 -16 200 2 1 1316 264 264 185 11 chr11 95939251 95939343 -25904513 - RSINE1 SINE B4 -35 130 23 1 1316 731 251 27 54 chr11 95939402 95939587 -25904269 + B3A SINE B2 1 180 -18 1 1316 1381 87 6 0 chr11 95939621 95939804 -25904052 - B2_Mm1a SINE B2 -9 184 1 1 1316 592 244 61 3 chr11 95939862 95940016 -25903840 - ID_B1 SINE B4 -46 246 81 1 1316 245 243 0 51 chr11 95939951 95940029 -25903827 + YREP_Mm Unknown Unknown 253 326 -1486 1 1316 505 255 0 11 chr11 95940052 95940187 -25903669 - B1F2 SINE Alu -5 144 18 1 1316 538 223 109 16 chr11 95940208 95940358 -25903498 + B3A SINE B2 2 161 -37 1 1316 180 0 0 0 chr11 95940358 95940378 -25903478 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 1 1316 415 245 96 90 chr11 95940378 95940393 -25903463 + B2_Mm2 SINE B2 154 168 -27 1 1316 416 263 35 9 chr11 95940397 95940512 -25903344 + RSINE1 SINE B4 3 120 -45 1 1316 592 235 0 0 chr11 95940601 95940720 -25903136 - B1_Mur1 SINE Alu -6 143 25 1 1316 1203 113 11 22 chr11 95940721 95940902 -25902954 + B2_Mm1t SINE B2 1 179 -14 1 1316 356 93 333 18 chr11 95940922 95941030 -25902826 + B2_Mm2 SINE B2 47 188 -7 1 1316 454 288 56 37 chr11 95941143 95941344 -25902512 + B3 SINE B2 2 194 -1 1 1316 1011 23 91 8 chr11 95941406 95941538 -25902318 + B1_Mm SINE Alu 5 147 0 1 1316 225 204 0 0 chr11 95941539 95941583 -25902273 + A-rich Low_complexity Low_complexity 1 44 0 1 1316 1256 91 17 6 chr11 95941673 95941850 -25902006 + B2_Mm1t SINE B2 1 179 -14 1 1316 306 181 0 40 chr11 95941873 95941940 -25901916 + B2_Mm2 SINE B2 47 109 -107 1 1316 360 0 0 0 chr11 95941955 95941995 -25901861 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 1316 369 280 0 0 chr11 95942015 95942090 -25901766 + B1F2 SINE Alu 53 127 -22 1 1316 558 299 74 46 chr11 95942134 95942351 -25901505 + B4 SINE B4 1 223 -69 1 1316 1546 54 0 5 chr11 95942388 95942573 -25901283 + LSU-rRNA_Hsa rRNA rRNA 4333 4516 -519 1 1316 407 107 0 0 chr11 95942573 95942629 -25901227 - B2_Mm2 SINE B2 -138 57 2 1 1316 342 0 0 0 chr11 95942876 95942914 -25900942 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 1 1316 225 0 0 0 chr11 95942958 95942983 -25900873 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1316 376 99 14 14 chr11 95943093 95943165 -25900691 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1316 1124 240 143 16 chr11 95943199 95943521 -25900335 + MTD LTR MaLR 57 419 0 1 1316 38 39 0 0 chr11 95943533 95943585 -25900271 + AT_rich Low_complexity Low_complexity 1 52 0 1 1316 868 188 91 0 chr11 95943588 95943735 -25900121 - B3 SINE B2 -10 206 56 1 1316 1508 49 38 0 chr11 95943735 95943920 -25899936 + B2_Mm1a SINE B2 2 193 0 1 1316 868 188 91 0 chr11 95943920 95943958 -25899898 - B3 SINE B2 -161 55 5 1 1316 812 185 20 34 chr11 95943977 95944174 -25899682 - B3 SINE B2 0 195 4 1 1316 464 287 54 0 chr11 95944179 95944308 -25899548 - B3 SINE B2 0 216 81 1 1316 405 174 72 0 chr11 95944361 95944430 -25899426 - B3 SINE B2 -141 75 2 1 1316 463 164 62 70 chr11 95944443 95944562 -25899294 - PB1D9 SINE Alu -21 128 6 1 164 1091 71 35 0 chr11 95944595 95944736 -25899120 - B1_Mus2 SINE Alu 0 147 2 1 1317 204 40 0 0 chr11 95944775 95944800 -25899056 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1317 441 222 0 24 chr11 95944816 95944899 -25898957 - B3A SINE B2 -38 160 80 1 1317 31 68 0 0 chr11 95944910 95944969 -25898887 + AT_rich Low_complexity Low_complexity 1 59 0 1 1317 1250 100 39 0 chr11 95944990 95945170 -25898686 - U2 snRNA snRNA -1 187 1 1 1317 1052 211 9 45 chr11 95945180 95945358 -25898498 - B3 SINE B2 0 216 46 1 1317 3169 60 5 5 chr11 95945358 95945758 -25898098 - MTB LTR MaLR 0 400 1 1 1317 1052 211 9 45 chr11 95945758 95945802 -25898054 - B3 SINE B2 -171 45 2 1 1317 500 283 0 8 chr11 95945894 95946015 -25897841 + PB1D7 SINE Alu 1 120 0 1 1317 310 179 0 0 chr11 95946061 95946117 -25897739 + B3 SINE B2 79 134 -82 1 1317 471 301 78 34 chr11 95946115 95946294 -25897562 + ID_B1 SINE B4 37 223 -1 1 1317 368 269 60 27 chr11 95946334 95946483 -25897373 + Tigger7 DNA MER2_type 112 265 -2226 1 1317 268 184 20 0 chr11 95946513 95946562 -25897294 + Tigger7 DNA MER2_type 2431 2480 -11 1 1317 352 115 0 37 chr11 95946611 95946665 -25897191 - PB1D9 SINE Alu -36 84 33 1 1317 243 195 0 0 chr11 95946701 95946742 -25897114 - PB1D7 SINE Alu -21 99 59 1 1317 482 290 56 112 chr11 95946803 95946842 -25897014 - MLT1A0 LTR MaLR -2 363 333 1 1317 852 152 0 40 chr11 95946842 95946993 -25896863 + B1_Mm SINE Alu 3 147 0 1 1317 482 290 56 112 chr11 95946993 95947131 -25896725 - MLT1A0 LTR MaLR -33 332 192 1 1317 1581 202 46 33 chr11 95947131 95947499 -25896357 - ORR1D1 LTR MaLR -1 373 1 1 1317 482 290 56 112 chr11 95947499 95947553 -25896303 - MLT1A0 LTR MaLR -174 191 144 1 1317 828 148 0 47 chr11 95947641 95947790 -25896066 - B1_Mm SINE Alu -1 146 5 1 1317 468 290 53 59 chr11 95947790 95947828 -25896028 - ID_B1 SINE B4 0 224 39 1 1317 212 204 0 83 chr11 95947801 95947849 -25896007 - PB1D9 SINE Alu -9 111 68 1 1317 656 220 45 0 chr11 95948125 95948257 -25895599 - B1F1 SINE Alu -9 140 3 1 1317 469 259 38 81 chr11 95948257 95948285 -25895571 - ID_B1 SINE B4 -9 215 63 1 1317 1190 268 41 8 chr11 95948407 95948772 -25895084 - MTEa LTR MaLR 0 379 3 1 1317 1242 48 0 0 chr11 95948823 95948969 -25894887 - B1_Mus2 SINE Alu 0 147 2 1 1317 575 242 114 0 chr11 95948992 95949124 -25894732 - B1_Mur3 SINE Alu -2 147 1 1 1317 271 206 129 11 chr11 95949124 95949217 -25894639 - L1M4 LINE L1 -3501 2645 2542 1 1317 238 333 113 9 chr11 95949221 95949327 -25894529 + PB1 SINE Alu 11 127 0 1 1317 238 271 34 0 chr11 95949326 95949385 -25894471 + B1_Mus1 SINE Alu 1 61 -87 1 1317 1126 156 50 10 chr11 95949399 95949600 -25894256 - B3 SINE B2 -6 210 2 1 1317 742 174 0 0 chr11 95949664 95949775 -25894081 - B1_Mur4 SINE Alu -6 144 34 1 1317 617 234 16 0 chr11 95949775 95949903 -25893953 + B3 SINE B2 1 130 -86 1 1317 423 56 0 0 chr11 95949975 95950029 -25893827 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 1 1317 375 262 36 27 chr11 95950036 95950146 -25893710 - RSINE1 SINE B4 -47 118 8 1 1317 376 333 29 0 chr11 95950159 95950261 -25893595 - ID_B1 SINE B4 -41 183 79 1 1317 1500 43 48 0 chr11 95950266 95950452 -25893404 - B2_Mm2 SINE B2 0 195 1 1 1317 858 158 0 0 chr11 95950525 95950658 -25893198 + B1_Mus2 SINE Alu 9 141 -6 1 1317 1077 96 0 0 chr11 95950660 95950816 -25893040 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 1 1317 1223 199 23 0 chr11 95950896 95951117 -25892739 - URR1A DNA MER1_type 0 226 1 1 1317 561 227 158 26 chr11 95951265 95951455 -25892401 + ID_B1 SINE B4 3 217 -7 1 1317 1278 182 13 107 chr11 95951461 95951694 -25892162 + RMER19C LTR ERVK 1 203 -408 1 1317 1356 79 11 0 chr11 95951694 95951872 -25891984 + B2_Mm1t SINE B2 1 180 -13 1 1317 294 29 0 0 chr11 95951872 95951907 -25891949 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1317 1278 244 60 101 chr11 95951907 95952477 -25891379 + RMER19C LTR ERVK 124 902 0 1 1317 827 196 121 0 chr11 95952480 95952653 -25891203 + B3 SINE B2 1 194 -22 1 1317 279 0 0 0 chr11 95952653 95952684 -25891172 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1317 725 182 45 0 chr11 95952705 95952837 -25891019 - B1_Mur4 SINE Alu 0 150 13 1 1317 432 303 33 33 chr11 95952837 95952855 -25891001 - ID_B1 SINE B4 0 224 75 1 1317 806 215 47 57 chr11 95952855 95953067 -25890789 - B3 SINE B2 -2 214 5 1 1317 1339 77 49 22 chr11 95953067 95953092 -25890764 - B2_Mm2 SINE B2 -5 190 159 1 1317 378 0 0 0 chr11 95953092 95953134 -25890722 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1317 1339 77 49 22 chr11 95953134 95953293 -25890563 - B2_Mm2 SINE B2 -37 158 1 1 1317 1837 176 80 14 chr11 95953351 95953747 -25890109 + RMER10A LTR ERVL 1 426 -16 1 1317 1480 68 5 16 chr11 95953747 95953940 -25889916 - B2_Mm1a SINE B2 -2 191 1 1 1317 1837 176 80 14 chr11 95953940 95953957 -25889899 + RMER10A LTR ERVL 427 441 -1 1 1317 242 287 140 56 chr11 95954112 95954219 -25889637 + L2a LINE L2 3311 3426 0 1 1317 1030 90 43 31 chr11 95954612 95954773 -25889083 + B2_Mm2 SINE B2 31 193 -2 1 1317 237 196 0 0 chr11 95954890 95954946 -25888910 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 1 1317 240 282 89 52 chr11 95955075 95955121 -25888735 + ORSL-2a DNA Tip100 74 123 -219 1 1317 1574 38 0 21 chr11 95955121 95955310 -25888546 + B2_Mm1t SINE B2 1 185 -8 1 1317 375 23 0 0 chr11 95955313 95955357 -25888499 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 1 1317 240 282 89 52 chr11 95955357 95955497 -25888359 + ORSL-2a DNA Tip100 124 269 -73 1 1317 1039 62 0 0 chr11 95955511 95955640 -25888216 + B1_Mus1 SINE Alu 2 130 -18 1 1317 247 246 15 30 chr11 95955640 95955702 -25888154 + B4A SINE B4 168 228 -64 1 1317 429 337 15 70 chr11 95955707 95955838 -25888018 + B4A SINE B4 9 136 -156 1 1317 1200 29 0 0 chr11 95955838 95955975 -25887881 + B1_Mus2 SINE Alu 1 137 -10 1 1317 216 0 0 0 chr11 95955975 95955999 -25887857 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1317 429 337 15 70 chr11 95955999 95956067 -25887789 + B4A SINE B4 137 197 -95 1 1317 315 0 0 0 chr11 95956068 95956103 -25887753 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1317 340 328 170 11 chr11 95956244 95956426 -25887430 - MIRb SINE MIR -30 238 28 1 1317 829 119 0 0 chr11 95956491 95956609 -25887247 - B3 SINE B2 -98 118 1 1 1317 313 324 86 22 chr11 95956793 95956932 -25886924 + ID_B1 SINE B4 69 216 -8 1 1317 34 0 0 41 chr11 95956991 95957017 -25886839 + AT_rich Low_complexity Low_complexity 1 26 0 1 1317 3055 45 3 3 chr11 95957017 95957396 -25886460 - L1Md_F2 LINE L1 -2 6580 6202 1 1317 34 0 0 41 chr11 95957396 95957418 -25886438 + AT_rich Low_complexity Low_complexity 1 21 0 1 1317 1223 55 0 0 chr11 95957428 95957573 -25886283 + B1_Mus2 SINE Alu 2 146 -1 1 1317 234 218 73 0 chr11 95957602 95957657 -25886199 + Lx8 LINE L1 6765 6823 -650 1 1317 392 250 162 62 chr11 95957904 95958083 -25885773 + B3A SINE B2 2 198 0 1 1317 270 253 93 5 chr11 95958545 95958650 -25885206 + B1F SINE Alu 1 123 -26 1 1317 356 191 295 18 chr11 95959107 95959219 -25884637 + ORR1C2 LTR MaLR 238 380 -4 1 1317 220 367 0 48 chr11 95959328 95959431 -25884425 + ID_B1 SINE B4 24 121 -103 1 1317 340 282 25 25 chr11 95959494 95959614 -25884242 + B3 SINE B2 2 121 -95 1 1317 435 279 76 23 chr11 95959706 95959838 -25884018 + B1F SINE Alu 1 139 -10 1 1317 1219 104 16 27 chr11 95960476 95960664 -25883192 + B2_Mm2 SINE B2 2 187 -8 1 1317 607 226 136 7 chr11 95960704 95960851 -25883005 + B3A SINE B2 3 168 -30 1 1317 487 221 164 0 chr11 95960924 95961046 -25882810 - B1F1 SINE Alu -7 142 1 1 1317 289 347 67 40 chr11 95961046 95961068 -25882788 - B4 SINE B4 -67 198 72 1 1317 507 202 0 0 chr11 95961071 95961160 -25882696 - ID_B1 SINE B4 0 224 136 1 1317 1175 78 42 12 chr11 95961737 95961905 -25881951 - B2_Mm2 SINE B2 -18 177 5 1 1317 872 126 28 14 chr11 95962294 95962439 -25881417 - B1_Mus1 SINE Alu 0 148 2 1 1317 1410 64 37 5 chr11 95962444 95962632 -25881224 - B2_Mm2 SINE B2 -1 194 1 1 1317 1101 30 82 0 chr11 95962667 95962801 -25881055 - B1_Mm SINE Alu 0 147 3 1 1317 260 273 10 75 chr11 95962816 95962937 -25880919 - B1F2 SINE Alu -7 113 1 1 1317 443 236 129 8 chr11 95962977 95963101 -25880755 + B1F2 SINE Alu 5 143 -6 1 1317 371 264 126 0 chr11 95963126 95963213 -25880643 + PB1D10 SINE Alu 10 107 -10 1 1317 1093 57 21 0 chr11 95963216 95963357 -25880499 + B1_Mus1 SINE Alu 5 148 0 1 1317 203 167 0 0 chr11 95963369 95963411 -25880445 + A-rich Low_complexity Low_complexity 1 42 0 1 1317 329 172 333 0 chr11 95963588 95963681 -25880175 + B1_Mur4 SINE Alu 9 132 -18 1 1317 377 235 119 49 chr11 95963728 95963871 -25879985 - CYRA11_Mm Unknown Y-chromosome -293 324 172 1 1317 776 86 94 0 chr11 95963744 95963872 -25879984 + URR1B DNA MER1_type 86 225 0 1 1317 334 322 22 0 chr11 95964249 95964339 -25879517 + PB1D7 SINE Alu 24 115 -5 1 1317 28 0 0 0 chr11 95965700 95965728 -25878128 + AT_rich Low_complexity Low_complexity 1 28 0 1 1317 1170 68 0 0 chr11 95965728 95965875 -25877981 - B1_Mus2 SINE Alu 0 147 1 1 1317 953 102 7 20 chr11 95965905 95966055 -25877801 - B1_Mus1 SINE Alu 0 148 1 1 1317 535 265 35 49 chr11 95966196 95966339 -25877517 + ID_B1 SINE B4 73 213 -11 1 1317 228 279 0 62 chr11 95966895 95966960 -25876896 - RSINE1 SINE B4 -36 129 69 1 1317 1076 65 0 21 chr11 95966967 95967108 -25876748 + B1_Mus2 SINE Alu 3 140 -7 1 1317 375 23 0 0 chr11 95967211 95967255 -25876601 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1317 262 310 233 0 chr11 95967259 95967375 -25876481 - RSINE1 SINE B4 -15 150 8 1 1317 25 51 0 0 chr11 95967464 95967503 -25876353 + AT_rich Low_complexity Low_complexity 1 39 0 1 1317 337 275 37 12 chr11 95967531 95967612 -25876244 - B3 SINE B2 -12 204 122 1 1317 1491 27 58 21 chr11 95967614 95967802 -25876054 + B2_Mm2 SINE B2 1 195 0 1 1317 392 282 46 53 chr11 95967804 95967935 -25875921 + ID_B1 SINE B4 82 211 -13 1 1317 816 186 120 47 chr11 95968047 95968239 -25875617 - B3 SINE B2 -9 207 2 1 1317 645 156 31 54 chr11 95968350 95968479 -25875377 - B1_Mur1 SINE Alu -1 148 23 1 1317 602 142 138 23 chr11 95968509 95968639 -25875217 + B1_Mus1 SINE Alu 2 146 -2 1 1317 574 254 57 66 chr11 95969713 95969924 -25873932 - B3 SINE B2 -3 213 5 1 1317 431 146 196 10 chr11 95969936 95970033 -25873823 + B2_Mm1a SINE B2 57 171 -22 1 1317 262 99 70 11 chr11 95970049 95970106 -25873750 + B2_Mm2 SINE B2 56 113 -103 1 1317 281 0 130 0 chr11 95970124 95970178 -25873678 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 1 1317 1100 75 0 26 chr11 95970178 95970329 -25873527 + B1_Mus2 SINE Alu 1 147 0 1 1317 429 222 130 38 chr11 95970360 95970491 -25873365 + ID_B1 SINE B4 81 223 -1 1 1317 1188 54 7 0 chr11 95970553 95970700 -25873156 + B1_Mus1 SINE Alu 1 148 0 1 1317 216 78 19 56 chr11 95970706 95970760 -25873096 + A-rich Low_complexity Low_complexity 3 54 0 1 1317 415 178 312 18 chr11 95970882 95970991 -25872865 + B1_Mus2 SINE Alu 7 147 0 1 1317 1095 69 28 0 chr11 95970999 95971143 -25872713 + B1_Mus1 SINE Alu 1 148 0 1 1317 3360 108 39 4 chr11 95971259 95971768 -25872088 - L1_Mus3 LINE L1 -2 6636 6110 1 1317 582 188 317 24 chr11 95971968 95972132 -25871724 + B3 SINE B2 2 213 -3 1 1317 540 158 7 167 chr11 95972161 95972305 -25871551 - B1_Mur4 SINE Alu -27 123 3 1 1317 816 173 29 18 chr11 95972352 95972523 -25871333 + B2_Mm2 SINE B2 8 180 -15 1 1317 1216 103 0 6 chr11 95972523 95972689 -25871167 + B2_Mm2 SINE B2 1 165 -30 1 1317 233 29 0 29 chr11 95972695 95972730 -25871126 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1317 207 179 0 0 chr11 95973435 95973474 -25870382 + T-rich Low_complexity Low_complexity 4 42 0 1 1317 1043 88 0 39 chr11 95973519 95973672 -25870184 + B1_Mus1 SINE Alu 2 148 0 1 1317 180 0 0 0 chr11 95973674 95973694 -25870162 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1317 414 338 15 15 chr11 95973790 95973922 -25869934 + ID_B1 SINE B4 91 222 -2 1 1317 1189 55 0 14 chr11 95974209 95974356 -25869500 - B1_Mus1 SINE Alu 0 148 4 1 1317 426 227 11 11 chr11 95974370 95974459 -25869397 - PB1D7 SINE Alu -31 89 1 1 1317 297 267 0 95 chr11 95974375 95974470 -25869386 - ID_B1 SINE B4 -61 163 78 1 1317 243 239 26 118 chr11 95974694 95974770 -25869086 - LTR90B LTR LTR -79 717 649 1 1317 835 82 0 0 chr11 95975126 95975236 -25868620 + B1_Mur4 SINE Alu 6 115 -35 1 1317 256 356 82 55 chr11 95975252 95975275 -25868581 + B4 SINE B4 66 91 -201 1 1317 436 291 9 35 chr11 95975275 95975389 -25868467 + B1F2 SINE Alu 2 112 -37 1 1317 597 261 27 90 chr11 95975802 95976025 -25867831 + B3 SINE B2 1 209 -7 1 1317 669 221 39 84 chr11 95976557 95976695 -25867161 - B3A SINE B2 -28 170 27 1 1317 781 97 26 0 chr11 95976695 95976809 -25867047 - PB1D9 SINE Alu 0 120 4 1 1317 669 221 39 84 chr11 95976809 95976848 -25867008 - B3A SINE B2 -172 26 1 1 1317 652 206 30 8 chr11 95976881 95977013 -25866843 + B1_Mus1 SINE Alu 2 136 -12 1 1317 435 38 0 0 chr11 95977013 95977066 -25866790 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 1 1317 1049 95 0 13 chr11 95977069 95977218 -25866638 + B1_Mus2 SINE Alu 1 147 0 1 1317 219 23 22 65 chr11 95977218 95977264 -25866592 + (CAAAA)n Simple_repeat Simple_repeat 5 48 0 1 1317 216 189 0 0 chr11 95977266 95977303 -25866553 + GA-rich Low_complexity Low_complexity 1 37 0 1 1317 304 370 0 29 chr11 95977330 95977433 -25866423 - RSINE1 SINE B4 -63 102 3 1 1317 258 105 0 0 chr11 95977687 95977725 -25866131 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1317 1156 62 14 0 chr11 95977725 95977870 -25865986 - B1_Mm SINE Alu 0 147 1 1 1317 1582 32 21 0 chr11 95978223 95978411 -25865445 + B2_Mm1a SINE B2 2 193 0 1 1317 411 209 0 0 chr11 95978414 95978481 -25865375 + ID_B1 SINE B4 143 209 -15 1 1317 323 283 161 42 chr11 95978644 95978836 -25865020 + ID_B1 SINE B4 2 216 -8 1 1317 24 32 0 0 chr11 95978840 95978871 -25864985 + AT_rich Low_complexity Low_complexity 1 31 0 1 1317 1086 82 0 27 chr11 95978970 95979120 -25864736 + B1_Mus1 SINE Alu 1 146 -2 1 1317 348 83 0 0 chr11 95979130 95979178 -25864678 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1317 1702 21 0 10 chr11 95979308 95979503 -25864353 - B2_Mm1a SINE B2 0 193 1 1 1317 25 0 0 0 chr11 95979507 95979532 -25864324 + AT_rich Low_complexity Low_complexity 1 25 0 1 1317 1272 34 0 0 chr11 95979532 95979678 -25864178 - B1_Mus2 SINE Alu 0 147 2 1 1317 220 281 11 137 chr11 95979821 95979916 -25863940 + MIR3 SINE MIR 96 178 -30 1 1317 1629 17 0 0 chr11 95979941 95980119 -25863737 + B2_Mm1a SINE B2 1 178 -15 1 1317 374 0 22 0 chr11 95980122 95980168 -25863688 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1317 584 184 93 29 chr11 95980179 95980319 -25863537 + B1_Mur2 SINE Alu 1 149 0 1 1317 636 165 0 0 chr11 95980319 95980434 -25863422 + GA-rich Low_complexity Low_complexity 3 117 0 1 1317 33 0 0 0 chr11 95980584 95980617 -25863239 + AT_rich Low_complexity Low_complexity 1 33 0 1 1317 954 39 108 0 chr11 95980617 95980746 -25863110 - B1_Mus1 SINE Alu 0 148 6 1 1317 540 81 0 0 chr11 95981063 95981137 -25862719 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1317 760 107 44 60 chr11 95981140 95981274 -25862582 - B2_Mm2 SINE B2 -23 170 37 1 1317 759 22 0 0 chr11 95981274 95981363 -25862493 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1317 760 143 45 520 chr11 95981363 95981385 -25862471 - B2_Mm2 SINE B2 -156 37 18 1 1317 508 301 22 0 chr11 95981385 95981499 -25862357 - ID_B1 SINE B4 -17 207 69 1 1317 863 64 0 0 chr11 95982188 95982298 -25861558 - B1_Mus2 SINE Alu -8 139 30 1 1317 1229 106 50 0 chr11 95982306 95982485 -25861371 - B2_Mm1t SINE B2 -2 191 4 1 1317 406 250 62 107 chr11 95982485 95982554 -25861302 - B4 SINE B4 -188 104 45 1 1317 504 244 57 43 chr11 95982632 95982773 -25861083 - B1_Mus2 SINE Alu 0 147 5 1 1317 275 229 71 71 chr11 95983059 95983172 -25860684 - PB1D10 SINE Alu -2 115 3 1 1317 35 0 0 0 chr11 95983570 95983605 -25860251 + AT_rich Low_complexity Low_complexity 1 35 0 1 1317 1603 42 0 0 chr11 95983706 95983895 -25859961 + B2_Mm1a SINE B2 1 189 -4 1 1317 1713 166 46 6 chr11 95983907 95984252 -25859604 - RMER10B LTR ERVL 0 398 40 1 1317 971 112 0 139 chr11 95984333 95984443 -25859413 + B2_Mm2 SINE B2 2 87 -108 1 1317 1190 48 14 0 chr11 95984443 95984588 -25859268 - B1_Mus2 SINE Alu 0 147 1 1 1317 971 112 0 139 chr11 95984588 95984664 -25859192 + B2_Mm2 SINE B2 88 162 -33 1 1317 243 0 0 0 chr11 95984674 95984701 -25859155 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1317 236 261 108 0 chr11 95984862 95984927 -25858929 + PB1D10 SINE Alu 6 77 -40 1 1317 198 167 0 0 chr11 95984951 95984987 -25858869 + (CCA)n Simple_repeat Simple_repeat 1 36 0 1 1317 275 49 24 0 chr11 95984989 95985030 -25858826 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1317 198 0 0 0 chr11 95986348 95986370 -25857486 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1317 930 153 14 0 chr11 95986440 95986584 -25857272 - B1_Mus1 SINE Alu -2 146 1 1 1317 201 339 137 0 chr11 95986919 95987043 -25856813 - MIR SINE MIR -22 240 100 1 1317 269 292 79 9 chr11 95987343 95987457 -25856399 - B1F SINE Alu -23 126 5 1 1317 266 260 106 39 chr11 95988020 95988124 -25855732 + PB1D10 SINE Alu 7 117 0 1 1317 285 29 0 0 chr11 95988189 95988223 -25855633 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1317 1181 56 19 0 chr11 95988223 95988383 -25855473 + (GGAAA)n Simple_repeat Simple_repeat 2 164 0 1 1317 676 246 0 21 chr11 95988709 95988850 -25855006 - B1_Mur1 SINE Alu -1 148 11 1 1317 338 152 32 11 chr11 95988861 95988954 -25854902 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 1317 430 248 16 66 chr11 95988967 95989088 -25854768 - PB1D7 SINE Alu -5 115 1 1 1317 464 345 7 0 chr11 95989427 95989566 -25854290 + ID_B1 SINE B4 56 195 -29 1 1317 261 0 0 0 chr11 95989628 95989657 -25854199 + (TGG)n Simple_repeat Simple_repeat 2 30 0 1 1317 297 300 12 0 chr11 95989657 95989730 -25854126 + ID4_ SINE ID 7 80 -3 1 1317 225 0 0 0 chr11 95989908 95989933 -25853923 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1317 372 216 92 10 chr11 95990045 95990143 -25853713 + B1F SINE Alu 2 107 -42 1 1317 524 217 11 0 chr11 95990191 95990283 -25853573 + RSINE1 SINE B4 2 94 -71 1 1317 405 0 0 0 chr11 95990295 95990340 -25853516 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1317 392 300 0 40 chr11 95990384 95990509 -25853347 + PB1D7 SINE Alu 1 120 0 1 1317 261 196 18 18 chr11 95990512 95990569 -25853287 + B4A SINE B4 2 58 -234 1 1317 249 108 0 0 chr11 95990598 95990635 -25853221 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1317 1115 79 0 0 chr11 95990917 95991056 -25852800 - B1_Mus1 SINE Alu -9 139 1 1 1317 242 259 0 17 chr11 95991265 95991324 -25852532 + ID_B1 SINE B4 84 141 -83 1 1317 473 239 217 0 chr11 95991329 95991467 -25852389 + B3 SINE B2 47 214 -2 1 1317 465 34 0 0 chr11 95991721 95991780 -25852076 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1317 459 0 0 0 chr11 95992610 95992661 -25851195 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1317 589 263 7 28 chr11 95992705 95992846 -25851010 - ID_B1 SINE B4 0 224 87 1 1317 256 164 13 152 chr11 95992784 95992863 -25850993 + YREP_Mm Unknown Unknown 252 319 -1493 1 1317 437 248 92 0 chr11 95992885 95992994 -25850862 + PB1D7 SINE Alu 1 119 -1 1 1317 1227 41 7 0 chr11 95993068 95993215 -25850641 - B1_Mus1 SINE Alu 0 148 1 1 1317 383 272 56 37 chr11 95993474 95993581 -25850275 + RSINE1 SINE B4 4 112 -53 1 1317 282 29 0 0 chr11 95993593 95993628 -25850228 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1317 596 130 0 85 chr11 95994180 95994356 -25849500 + (CAGAGA)n Simple_repeat Simple_repeat 3 163 0 1 1317 365 0 22 0 chr11 95994388 95994433 -25849423 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1317 582 41 0 0 chr11 95994435 95994508 -25849348 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1317 282 250 43 130 chr11 95994509 95994601 -25849255 + B2_Mm2 SINE B2 17 100 -95 1 1317 387 0 0 0 chr11 95995306 95995349 -25848507 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1317 25 0 0 0 chr11 95995850 95995875 -25847981 + AT_rich Low_complexity Low_complexity 1 25 0 1 1317 274 240 13 13 chr11 95995915 95995991 -25847865 + ID4_ SINE ID 5 80 -3 1 1317 294 250 97 11 chr11 95996387 95996480 -25847376 - B1_Mur1 SINE Alu -3 146 46 1 1317 312 256 13 13 chr11 95997742 95997821 -25846035 + B3 SINE B2 2 80 -136 1 1317 862 63 0 0 chr11 95997862 95997973 -25845883 - B1_Mus2 SINE Alu -36 111 1 1 1317 23 33 0 0 chr11 95997976 95998006 -25845850 + AT_rich Low_complexity Low_complexity 1 30 0 1 1317 799 149 6 63 chr11 95998137 95998295 -25845561 + B1_Mur4 SINE Alu 1 149 -1 1 1317 225 159 0 0 chr11 95998296 95998340 -25845516 + A-rich Low_complexity Low_complexity 1 44 0 1 1317 742 167 51 24 chr11 95998349 95998531 -25845325 + B3 SINE B2 2 177 -18 1 1317 235 385 38 9 chr11 95998713 95998818 -25845038 - ID_B1 SINE B4 -45 179 72 1 1317 435 238 10 10 chr11 95998855 95998957 -25844899 - ID_B1 SINE B4 0 224 123 1 1317 268 23 68 0 chr11 95998957 95999001 -25844855 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 1 1317 1245 27 0 7 chr11 95999001 95999148 -25844708 - B1_Mus1 SINE Alu 0 148 3 1 1317 418 272 70 23 chr11 95999148 95999276 -25844580 - ID_B1 SINE B4 -90 134 1 1 1317 885 182 8 119 chr11 95999727 95999970 -25843886 + B3 SINE B2 1 216 0 1 1317 1372 84 5 10 chr11 96001347 96001539 -25842317 - B2_Mm1t SINE B2 -1 192 2 1 1317 1207 68 0 0 chr11 96001839 96001986 -25841870 + B1_Mm SINE Alu 1 147 0 2 1317 201 94 0 0 chr11 96001989 96002021 -25841835 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 3 1317 207 0 0 0 chr11 96002515 96002538 -25841318 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 4 1317 361 186 112 69 chr11 96002710 96002849 -25841007 - MIR SINE MIR -103 165 31 5 1317 366 248 8 12 chr11 96002939 96003188 -25840668 + (TG)n Simple_repeat Simple_repeat 1 248 0 6 1317 307 219 54 14 chr11 96003189 96003263 -25840593 - ID_B1 SINE B4 -26 198 122 7 1317 381 254 189 0 chr11 96003267 96003389 -25840467 - B1F SINE Alu -4 145 1 8 1317 1400 79 21 0 chr11 96003407 96003597 -25840259 - B2_Mm2 SINE B2 -1 194 1 9 1317 214 354 22 65 chr11 96003726 96003865 -25839991 + MIRc SINE MIR 69 201 -67 1 1317 1150 30 15 0 chr11 96003939 96004073 -25839783 + B1_Mm SINE Alu 2 137 -10 1 1317 190 51 77 0 chr11 96004083 96004122 -25839734 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1317 432 166 7 86 chr11 96004200 96004292 -25839564 + PB1D10 SINE Alu 29 118 -31 1 1317 184 208 31 20 chr11 96004297 96004395 -25839461 + GA-rich Low_complexity Low_complexity 2 100 0 1 1317 249 292 207 40 chr11 96004794 96004944 -25838912 - MLT1A0 LTR MaLR -233 175 1 1 1317 331 309 25 104 chr11 96005306 96005508 -25838348 + Tigger15a DNA TcMar 488 673 -42 1 1317 960 112 49 0 chr11 96005743 96005886 -25837970 + B1_Mur4 SINE Alu 1 150 0 1 1317 334 277 12 12 chr11 96005936 96006020 -25837836 - RSINE1 SINE B4 -21 144 61 1 1317 267 31 0 0 chr11 96006334 96006366 -25837490 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1317 840 76 101 0 chr11 96007723 96007842 -25836014 - B1_Mus1 SINE Alu 0 148 18 2 1317 414 273 100 7 chr11 96007728 96007868 -25835988 - B4 SINE B4 -71 221 69 2 1317 671 135 9 45 chr11 96007962 96008091 -25835765 - B1_Mur4 SINE Alu -22 127 3 2 1317 326 252 60 51 chr11 96007988 96008105 -25835751 - B4A SINE B4 -97 195 78 2 1317 188 216 0 19 chr11 96008107 96008159 -25835697 + CT-rich Low_complexity Low_complexity 3 53 0 2 1317 441 68 40 0 chr11 96008173 96008247 -25835609 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 2 1317 547 254 13 101 chr11 96008249 96008398 -25835458 - B1F SINE Alu -2 147 12 2 1317 226 293 93 75 chr11 96008314 96008421 -25835435 - MT2B2 LTR ERVL -327 257 149 2 1317 444 134 119 24 chr11 96008425 96008509 -25835347 + B1_Mur1 SINE Alu 58 149 0 2 1317 224 217 87 0 chr11 96009145 96009183 -25834673 + RSINE1 SINE B4 3 44 -121 2 1317 492 201 29 17 chr11 96009183 96009298 -25834558 + B1_Mur3 SINE Alu 1 128 -21 3 1317 333 109 0 0 chr11 96009304 96009359 -25834497 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1317 216 0 0 0 chr11 96009366 96009390 -25834466 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1317 459 0 0 0 chr11 96009433 96009484 -25834372 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1317 336 232 148 20 chr11 96009507 96009608 -25834248 - B4A SINE B4 -8 284 171 3 1317 339 297 44 26 chr11 96009777 96009891 -25833965 - PB1D10 SINE Alu 0 117 2 3 1317 4367 124 40 45 chr11 96009953 96010500 -25833356 - RMER6A LTR ERVK 0 756 204 3 1317 6214 147 28 3 chr11 96010500 96011476 -25832380 - Lx4A LINE L1 -3 7055 6056 3 1317 4367 124 40 45 chr11 96011476 96011688 -25832168 - RMER6A LTR ERVK -553 203 1 3 1317 1161 48 7 27 chr11 96011704 96011853 -25832003 + B1_Mus1 SINE Alu 1 146 -2 3 1317 351 0 0 0 chr11 96011904 96011943 -25831913 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1317 531 0 0 0 chr11 96011943 96012001 -25831855 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1317 419 272 57 102 chr11 96012003 96012042 -25831814 + B4 SINE B4 46 213 -79 4 1317 958 146 0 0 chr11 96012042 96012179 -25831677 + B1_Mur4 SINE Alu 1 137 -13 4 1317 987 9 0 0 chr11 96012569 96012681 -25831175 + (CTGTG)n Simple_repeat Simple_repeat 3 114 0 4 1317 203 311 100 0 chr11 96013780 96013870 -25829986 - MIRm SINE MIR -177 99 1 4 1317 750 196 172 11 chr11 96014108 96014294 -25829562 - B3 SINE B2 0 216 1 4 1317 754 259 111 5 chr11 96015135 96015333 -25828523 - ID_B1 SINE B4 0 224 6 4 1317 279 0 0 0 chr11 96015353 96015384 -25828472 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1317 485 180 122 35 chr11 96015398 96015513 -25828343 - B1F1 SINE Alu -21 128 4 4 1317 279 316 40 59 chr11 96016503 96016604 -25827252 + MER2 DNA MER2_type 244 342 -3 4 1317 342 0 0 0 chr11 96016709 96016747 -25827109 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 5 1317 689 113 25 12 chr11 96016768 96016900 -25826956 + B1_Mur3 SINE Alu 22 149 0 5 1317 279 222 0 0 chr11 96016927 96016981 -25826875 + PB1D9 SINE Alu 2 55 -65 5 1317 1271 27 0 7 chr11 96017018 96017166 -25826690 + B1_Mm SINE Alu 1 147 0 5 1317 1572 38 5 0 chr11 96017194 96017379 -25826477 + B2_Mm1t SINE B2 2 187 -6 5 1317 1248 28 7 0 chr11 96017550 96017695 -25826161 - B1_Mus2 SINE Alu 0 147 2 5 1317 500 267 0 0 chr11 96018459 96018560 -25825296 + PB1D10 SINE Alu 10 110 -7 5 1317 217 184 0 20 chr11 96018560 96018610 -25825246 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 5 1317 405 248 79 16 chr11 96018626 96018753 -25825103 + B3 SINE B2 81 215 -1 5 1317 998 224 92 0 chr11 96018757 96018953 -25824903 - B3 SINE B2 -2 214 1 5 1317 1139 106 15 55 chr11 96018975 96019174 -25824682 + B2_Mm2 SINE B2 2 192 -3 6 1317 548 293 6 35 chr11 96019178 96019348 -25824508 + RSINE1 SINE B4 1 165 0 6 1317 983 203 71 0 chr11 96019382 96019579 -25824277 + B3 SINE B2 2 212 -4 6 1317 474 289 32 45 chr11 96020910 96021078 -25822778 + RSINE1 SINE B4 2 161 -63 6 1317 626 243 0 27 chr11 96021139 96021287 -25822569 + B1F2 SINE Alu 1 144 -5 6 1317 331 273 69 52 chr11 96021288 96021404 -25822452 + PB1D7 SINE Alu 3 120 0 6 1317 499 270 12 9 chr11 96021480 96021616 -25822240 + RSINE1 SINE B4 25 161 -4 6 1317 1173 58 0 0 chr11 96021645 96021782 -25822074 + B1_Mus2 SINE Alu 2 138 -9 6 1317 272 48 24 0 chr11 96021782 96021824 -25822032 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1317 1277 167 9 9 chr11 96021859 96022071 -25821785 - B3 SINE B2 0 216 5 6 1317 591 233 131 6 chr11 96022077 96022237 -25821619 - B3A SINE B2 0 198 19 7 1317 518 190 8 0 chr11 96022299 96022420 -25821436 + (CATA)n Simple_repeat Simple_repeat 2 123 0 7 1317 419 275 0 0 chr11 96022481 96022572 -25821284 + PB1D7 SINE Alu 30 120 0 7 1317 517 317 0 14 chr11 96022701 96022727 -25821129 + B4 SINE B4 60 83 -209 7 1317 776 172 0 45 chr11 96022727 96022861 -25820995 + B1_Mur2 SINE Alu 1 128 -21 7 1317 900 223 76 0 chr11 96022866 96023063 -25820793 - B3 SINE B2 -4 212 1 7 1317 261 83 0 0 chr11 96023075 96023111 -25820745 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 1317 207 0 0 0 chr11 96023111 96023134 -25820722 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1317 676 258 0 125 chr11 96023134 96023342 -25820514 - B3A SINE B2 -16 182 1 7 1317 607 140 27 34 chr11 96023342 96023490 -25820366 + CT-rich Low_complexity Low_complexity 2 148 0 7 1317 215 315 14 0 chr11 96023502 96023575 -25820281 - PB1D10 SINE Alu -43 74 1 8 1317 895 101 180 13 chr11 96023812 96023962 -25819894 + B2_Mm2 SINE B2 2 176 -19 8 1317 288 0 0 0 chr11 96023969 96024001 -25819855 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1317 579 29 0 0 chr11 96024001 96024069 -25819787 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 1317 571 160 33 61 chr11 96024116 96024296 -25819560 + RMER17C LTR ERVK 100 274 -136 8 1317 1197 50 0 0 chr11 96024538 96024678 -25819178 + B1_Mus2 SINE Alu 2 141 -6 8 1317 210 37 0 0 chr11 96024678 96024705 -25819151 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 8 1317 21 0 0 0 chr11 96024834 96024855 -25819001 + GC_rich Low_complexity Low_complexity 1 21 0 8 1317 255 130 85 50 chr11 96025141 96025207 -25818649 - MIR SINE MIR -112 164 89 8 1317 1064 133 0 0 chr11 96025251 96025394 -25818462 + B1_Mus2 SINE Alu 5 147 0 8 1317 287 195 24 12 chr11 96025396 96025479 -25818377 + A-rich Low_complexity Low_complexity 1 84 0 9 1317 816 256 5 36 chr11 96025487 96025710 -25818146 - Lx7 LINE L1 -346 7350 7135 9 1317 384 351 26 13 chr11 96027371 96027527 -25816329 + MER45A DNA Tip100 19 176 -2 9 1317 310 267 0 106 chr11 96027819 96027835 -25816021 + MT2B LTR ERVL 154 254 -347 9 1317 588 175 10 0 chr11 96027835 96027932 -25815924 + B1_Mur4 SINE Alu 5 102 -48 9 1317 556 283 6 12 chr11 96028453 96028614 -25815242 + RSINE1 SINE B4 4 163 -2 9 1317 814 250 24 24 chr11 96028620 96028825 -25815031 + B3 SINE B2 1 205 -11 9 1317 333 253 0 39 chr11 96028837 96028915 -25814941 + ID4_ SINE ID 3 77 -6 9 1317 472 364 67 14 chr11 96029026 96029249 -25814607 + B4A SINE B4 12 246 -46 9 1317 433 84 28 0 chr11 96029249 96029320 -25814536 + (GA)n Simple_repeat Simple_repeat 1 73 0 9 1317 214 256 0 0 chr11 96029351 96029394 -25814462 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1317 209 286 58 23 chr11 96030808 96030894 -25812962 - MIRm SINE MIR -64 212 124 1 1317 750 22 0 21 chr11 96031042 96031137 -25812719 - B1_Mus2 SINE Alu -13 134 42 1 1317 288 40 0 152 chr11 96031087 96031146 -25812710 - 4.5SRNA scRNA scRNA -8 86 37 1 1317 201 74 0 0 chr11 96031154 96031181 -25812675 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 1 1317 259 45 22 22 chr11 96031287 96031333 -25812523 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1317 477 0 0 0 chr11 96032882 96032935 -25810921 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1317 478 258 245 0 chr11 96035236 96035395 -25808461 + B3A SINE B2 1 198 0 1 1317 752 228 0 0 chr11 96035736 96035872 -25807984 + B1_Mur3 SINE Alu 13 148 -1 1 1317 630 0 0 0 chr11 96035907 96035977 -25807879 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 1 1317 520 290 36 7 chr11 96035977 96036116 -25807740 - RSINE1 SINE B4 -10 155 13 1 1317 320 280 143 8 chr11 96036343 96036469 -25807387 + B4A SINE B4 41 183 -109 1 1317 23 0 0 0 chr11 96037252 96037275 -25806581 + AT_rich Low_complexity Low_complexity 1 23 0 1 1317 435 304 32 45 chr11 96037530 96037685 -25806171 + RSINE1 SINE B4 3 155 -10 1 1317 308 273 143 9 chr11 96037727 96037822 -25806034 - B1F1 SINE Alu -2 115 8 1 1317 245 267 0 0 chr11 96037784 96037829 -25806027 - ID_B1 SINE B4 -98 126 82 1 1317 396 0 0 0 chr11 96038146 96038190 -25805666 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1317 240 234 76 30 chr11 96038192 96038258 -25805598 - B1_Mus1 SINE Alu -51 97 29 1 1317 180 0 0 0 chr11 96040277 96040297 -25803559 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1317 546 91 0 0 chr11 96040850 96040927 -25802929 + (T)n Simple_repeat Simple_repeat 1 77 0 1 1317 452 286 67 0 chr11 96041847 96041952 -25801904 + RSINE1 SINE B4 3 114 -51 1 1317 423 0 0 0 chr11 96041952 96041999 -25801857 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1317 258 105 0 0 chr11 96042101 96042139 -25801717 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1317 504 175 49 49 chr11 96042541 96042643 -25801213 + PB1D9 SINE Alu 2 103 -17 1 1317 568 216 271 6 chr11 96043563 96043740 -25800116 - ID_B1 SINE B4 0 224 1 1 1317 382 268 45 38 chr11 96043756 96043888 -25799968 - MIRc SINE MIR -74 194 62 1 1317 230 301 65 52 chr11 96044156 96044233 -25799623 + ID4 SINE ID 3 80 -3 1 1317 1293 176 24 0 chr11 96044274 96044479 -25799377 + B3 SINE B2 1 210 -6 1 1317 900 100 0 27 chr11 96044534 96044719 -25799137 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1317 391 256 23 0 chr11 96045623 96045709 -25798147 + PB1 SINE Alu 1 88 -39 1 1317 369 0 0 0 chr11 96045751 96045792 -25798064 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1317 219 69 0 0 chr11 96046115 96046144 -25797712 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1317 540 301 61 9 chr11 96046161 96046392 -25797464 - Lx7 LINE L1 -395 7301 7059 1 1317 263 279 114 23 chr11 96046460 96046592 -25797264 - B3A SINE B2 -54 144 1 1 1317 239 221 26 105 chr11 96047172 96047248 -25796608 + ID4 SINE ID 5 74 -9 1 1317 561 30 0 0 chr11 96049020 96049087 -25794769 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1317 328 304 152 68 chr11 96050945 96051241 -25792615 + L1MC4 LINE L1 827 1147 -5068 1 1317 258 215 263 21 chr11 96052091 96052186 -25791670 - MIRc SINE MIR -28 240 123 1 1317 276 190 21 25 chr11 96052958 96053055 -25790801 - L1ME1 LINE L1 -505 5939 5844 1 1317 531 335 14 48 chr11 96053208 96053418 -25790438 + ID_B1 SINE B4 7 209 -15 1 1317 300 269 13 0 chr11 96053406 96053484 -25790372 - U6 snRNA snRNA -6 101 23 1 1317 628 149 78 9 chr11 96053652 96053767 -25790089 - B1_Mus2 SINE Alu -13 134 12 1 1317 206 208 19 0 chr11 96054685 96054738 -25789118 + CT-rich Low_complexity Low_complexity 2 55 0 1 1317 288 0 0 0 chr11 96055314 96055346 -25788510 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1317 219 183 12 24 chr11 96055349 96055433 -25788423 + (CAGAGA)n Simple_repeat Simple_repeat 4 86 0 1 1317 251 164 16 0 chr11 96056842 96056903 -25786953 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1317 462 308 22 36 chr11 96059288 96059426 -25784430 + B1F SINE Alu 1 136 -13 1 1317 22 0 0 0 chr11 96059428 96059450 -25784406 + AT_rich Low_complexity Low_complexity 1 22 0 1 1317 353 208 0 127 chr11 96063487 96063597 -25780259 + MT2B LTR ERVL 169 264 -337 1 1317 1007 54 0 0 chr11 96063503 96063632 -25780224 + B1_Mus2 SINE Alu 19 147 0 1 1317 258 56 0 0 chr11 96063632 96063668 -25780188 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1317 333 0 0 0 chr11 96064216 96064253 -25779603 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1317 221 75 25 0 chr11 96064526 96064566 -25779290 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1317 180 0 0 0 chr11 96066833 96066853 -25777003 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1317 304 213 16 0 chr11 96066859 96066920 -25776936 + ID4_ SINE ID 7 68 -15 1 1317 531 144 16 8 chr11 96067532 96067658 -25776198 + GA-rich Low_complexity Low_complexity 1 127 0 1 1317 229 254 119 0 chr11 96067728 96067795 -25776061 - PB1D7 SINE Alu -15 105 31 1 1317 294 275 0 0 chr11 96067995 96068064 -25775792 + ID4_ SINE ID 3 71 -12 1 1317 291 260 0 61 chr11 96068428 96068510 -25775346 + ID SINE ID 1 77 -147 1 1317 403 289 0 69 chr11 96068653 96068783 -25775073 + B1_Mur3 SINE Alu 22 142 -7 1 1317 453 277 83 21 chr11 96069767 96069959 -25773897 - ID_B1 SINE B4 -18 206 3 1 1317 888 193 76 103 chr11 96070436 96070806 -25773050 - RMER17C LTR ERVK -50 360 1 1 1317 213 345 0 0 chr11 96070806 96070864 -25772992 + ID4_ SINE ID 26 83 0 1 1317 925 127 15 7 chr11 96071060 96071195 -25772661 + B1_Mur3 SINE Alu 1 136 -13 1 1317 478 239 92 17 chr11 96071269 96071388 -25772468 + B4 SINE B4 8 135 -157 1 1317 211 146 71 18 chr11 96071393 96071449 -25772407 + G-rich Low_complexity Low_complexity 2 60 0 1 1317 269 26 26 0 chr11 96071669 96071707 -25772149 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1317 928 118 7 15 chr11 96071721 96071858 -25771998 - B1_Mur3 SINE Alu -1 148 13 1 1317 1101 200 53 5 chr11 96072011 96072217 -25771639 - B3 SINE B2 0 216 1 1 1317 1089 107 77 22 chr11 96072310 96072491 -25771365 - B2_Mm2 SINE B2 -4 191 1 1 1317 2097 193 57 186 chr11 96072492 96073191 -25770665 - RMER19C LTR ERVK -2 609 1 1 1317 305 324 57 9 chr11 96073191 96073297 -25770559 - B1F SINE Alu -26 123 13 1 1317 710 247 60 0 chr11 96073608 96073758 -25770098 + RSINE1 SINE B4 1 159 -6 1 1317 594 103 0 0 chr11 96073927 96074014 -25769842 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1317 271 283 83 0 chr11 96074514 96074574 -25769282 - B3 SINE B2 -38 178 114 1 1317 793 120 25 19 chr11 96074790 96074951 -25768905 + CT-rich Low_complexity Low_complexity 4 165 0 1 1317 1206 74 0 0 chr11 96074953 96075101 -25768755 - B1_Mus1 SINE Alu 0 148 1 1 1317 196 373 57 29 chr11 96075101 96075206 -25768650 + MIRm SINE MIR 156 263 -13 1 1317 723 227 181 6 chr11 96075268 96075445 -25768411 - B3 SINE B2 -6 210 3 1 1317 514 274 47 27 chr11 96075510 96075660 -25768196 - RSINE1 SINE B4 -10 155 3 1 164 472 215 13 0 chr11 96075722 96075801 -25768055 + ID_B1 SINE B4 37 116 -108 1 1318 689 149 98 63 chr11 96075814 96075957 -25767899 - B1_Mur4 SINE Alu -2 148 1 1 1318 405 293 56 21 chr11 96075958 96076101 -25767755 - B1F1 SINE Alu -1 148 1 1 1318 761 246 105 22 chr11 96076392 96076616 -25767240 + ID_B1 SINE B4 1 246 -46 1 1318 938 155 0 0 chr11 96076792 96076940 -25766916 - B1_Mur4 SINE Alu -1 149 2 1 1318 219 300 143 18 chr11 96077311 96077423 -25766433 - RSINE1 SINE B4 -2 163 38 1 1318 509 276 6 76 chr11 96077480 96077637 -25766219 - RSINE1 SINE B4 -16 149 4 1 1318 732 219 169 86 chr11 96077685 96077940 -25765916 + B4 SINE B4 3 278 -14 1 1318 468 0 0 0 chr11 96077977 96078029 -25765827 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1318 796 102 118 0 chr11 96078223 96078350 -25765506 + B1_Mur4 SINE Alu 2 143 -7 1 1318 184 250 99 62 chr11 96078367 96078448 -25765408 + L2 LINE L2 555 638 -2781 1 1318 204 97 0 0 chr11 96079534 96079565 -25764291 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1318 1236 35 7 0 chr11 96079949 96080094 -25763762 + B1_Mus1 SINE Alu 1 146 -2 1 1318 1330 90 16 0 chr11 96080101 96080290 -25763566 + B2_Mm1t SINE B2 2 193 0 1 1318 1973 212 29 153 chr11 96080444 96081114 -25762742 + RMER19C LTR ERVK 1 594 -17 1 1318 1240 35 7 0 chr11 96081122 96081267 -25762589 + B1_Mm SINE Alu 2 147 0 1 1318 523 213 0 136 chr11 96081272 96081405 -25762451 + MT2B LTR ERVL 139 257 -344 1 1318 1088 58 0 7 chr11 96081312 96081451 -25762405 + B1_Mus2 SINE Alu 10 147 0 1 1318 777 219 158 0 chr11 96081708 96081891 -25761965 + B3 SINE B2 2 213 -3 1 1318 235 163 20 0 chr11 96081901 96081952 -25761904 + (CCAA)n Simple_repeat Simple_repeat 1 52 0 1 1318 1155 88 0 13 chr11 96081952 96082102 -25761754 + B1_Mus1 SINE Alu 1 148 0 2 1318 210 217 21 21 chr11 96082102 96082145 -25761711 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 2 1318 339 216 178 22 chr11 96082150 96082240 -25761616 + PB1D10 SINE Alu 1 104 -13 2 1318 443 291 72 75 chr11 96082297 96082657 -25761199 + L1MD LINE L1 2842 3200 -2946 2 1318 346 231 14 142 chr11 96082893 96082918 -25760938 + MT2B LTR ERVL 142 148 -453 2 1318 715 148 8 34 chr11 96082918 96083037 -25760819 + B1_Mur4 SINE Alu 3 118 -32 2 1318 229 200 0 0 chr11 96083037 96083092 -25760764 + T-rich Low_complexity Low_complexity 1 55 0 2 1318 1098 101 0 13 chr11 96083094 96083244 -25760612 - B1_Mus1 SINE Alu 0 148 1 2 1318 685 153 7 14 chr11 96083297 96083436 -25760420 + GA-rich Low_complexity Low_complexity 3 140 0 2 1318 1655 42 0 0 chr11 96083523 96083716 -25760140 + B2_Mm1t SINE B2 1 193 0 2 1318 1164 36 0 48 chr11 96083722 96083869 -25759987 + B1_Mus2 SINE Alu 1 140 -7 2 1318 183 42 0 0 chr11 96083869 96083893 -25759963 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 1318 258 299 25 38 chr11 96083923 96084003 -25759853 + B2_Mm2 SINE B2 1 79 -116 2 1318 459 0 0 0 chr11 96084026 96084077 -25759779 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1318 669 274 34 0 chr11 96084095 96084241 -25759615 + RSINE1 SINE B4 15 165 0 2 1318 261 319 74 57 chr11 96084241 96084266 -25759590 + B2_Mm2 SINE B2 14 187 -8 2 1318 996 123 0 14 chr11 96084281 96084421 -25759435 + B1_Mur3 SINE Alu 3 140 -9 2 1318 253 286 32 0 chr11 96084442 96084505 -25759351 + B1_Mus1 SINE Alu 3 67 -81 2 1318 753 291 62 9 chr11 96084480 96084705 -25759151 + MLT1D LTR MaLR 268 504 -1 2 1318 1167 241 39 44 chr11 96084706 96085139 -25758717 + L1MD LINE L1 3351 3781 -2365 2 1318 209 200 0 0 chr11 96085141 96085186 -25758670 + A-rich Low_complexity Low_complexity 2 46 0 2 1318 582 259 86 23 chr11 96085206 96085380 -25758476 + B3 SINE B2 5 189 -27 2 1318 681 219 85 46 chr11 96085386 96085645 -25758211 + L1MD LINE L1 3757 4025 -2121 2 1318 180 0 0 0 chr11 96085651 96085671 -25758185 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1318 1142 92 0 0 chr11 96085672 96085814 -25758042 - B1_Mus1 SINE Alu -5 143 2 2 1318 2315 92 6 3 chr11 96085941 96086259 -25757597 + ORR1A2 LTR MaLR 1 319 -8 2 1318 448 294 54 39 chr11 96086266 96086471 -25757385 + L1MD LINE L1 4168 4375 -1771 2 1318 619 193 0 34 chr11 96086509 96086627 -25757229 + RSINE1 SINE B4 11 124 -41 2 1318 387 0 0 0 chr11 96086628 96086671 -25757185 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1318 340 211 0 106 chr11 96086723 96086808 -25757048 + RLTR25A LTR ERVK 501 576 -527 2 1318 750 142 9 0 chr11 96086739 96086852 -25757004 + B1_Mus1 SINE Alu 35 148 0 2 1318 933 227 16 21 chr11 96086861 96087050 -25756806 - B3 SINE B2 -28 188 1 2 1318 598 197 189 0 chr11 96087160 96087282 -25756574 + B1_Mur1 SINE Alu 1 145 -4 2 1318 3517 51 11 19 chr11 96087284 96087746 -25756110 + L1Md_F2 LINE L1 6122 6579 -3 2 1318 729 138 73 80 chr11 96088298 96088448 -25755408 - B1_Mur4 SINE Alu 0 150 2 2 1318 4951 142 56 65 chr11 96088590 96089500 -25754356 - RMER19B LTR ERVK 0 902 1 2 1318 1357 71 22 5 chr11 96089502 96089687 -25754169 + B2_Mm2 SINE B2 3 190 -5 2 1318 549 294 92 64 chr11 96089709 96090069 -25753787 - ORR1D2 LTR MaLR 0 370 1 2 1318 976 211 21 21 chr11 96090178 96090372 -25753484 + B3 SINE B2 1 194 -22 2 1318 1208 68 0 0 chr11 96090372 96090518 -25753338 + B1_Mm SINE Alu 1 146 -1 2 1318 860 233 5 20 chr11 96090635 96090832 -25753024 + B3A SINE B2 5 198 0 2 1318 996 151 7 0 chr11 96090940 96091086 -25752770 + B1_Mur3 SINE Alu 2 148 -1 2 1318 674 122 17 0 chr11 96091086 96091201 -25752655 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 2 1318 1392 84 0 10 chr11 96091317 96091509 -25752347 - B2_Mm2 SINE B2 -4 191 2 2 1318 843 105 229 0 chr11 96091726 96091879 -25751977 + B2_Mm1a SINE B2 2 189 -4 2 1318 643 234 99 0 chr11 96091894 96092065 -25751791 + Lx6 LINE L1 6941 7128 -332 2 1318 455 261 78 78 chr11 96092102 96092281 -25751575 + ID_B1 SINE B4 1 179 -45 2 1318 259 306 136 20 chr11 96092701 96092802 -25751054 + RSINE1 SINE B4 1 117 -48 2 1318 981 110 0 0 chr11 96092802 96092867 -25750989 + (CA)n Simple_repeat Simple_repeat 1 66 -186 2 1318 981 110 0 0 chr11 96092874 96093054 -25750802 + (CA)n Simple_repeat Simple_repeat 67 252 0 2 1318 259 306 136 20 chr11 96093054 96093091 -25750765 + RSINE1 SINE B4 125 163 -2 2 1318 38 22 0 0 chr11 96093121 96093166 -25750690 + AT_rich Low_complexity Low_complexity 1 45 0 2 1318 1258 97 11 11 chr11 96093190 96093367 -25750489 - B2_Mm2 SINE B2 -14 181 5 2 1318 830 235 97 0 chr11 96093372 96093568 -25750288 - B3 SINE B2 -1 215 1 2 1318 25 0 0 0 chr11 96093568 96093593 -25750263 + AT_rich Low_complexity Low_complexity 1 25 0 2 1318 1032 98 21 0 chr11 96093598 96093741 -25750115 + B1_Mur4 SINE Alu 2 147 -3 2 1318 2006 81 147 0 chr11 96093946 96094231 -25749625 + ORR1A2 LTR MaLR 1 327 0 2 1318 181 250 0 48 chr11 96094385 96094427 -25749429 + L4 LINE RTE 975 1014 -1015 2 1318 203 181 27 27 chr11 96094531 96094605 -25749251 + CT-rich Low_complexity Low_complexity 2 75 0 2 1318 304 270 0 31 chr11 96094610 96094675 -25749181 - ID4_ SINE ID -13 70 8 2 1318 763 269 74 5 chr11 96094952 96095154 -25748702 + B3 SINE B2 1 216 0 2 1318 439 103 4 183 chr11 96095155 96095244 -25748612 + Lx LINE L1 6556 6608 -46 2 1318 1254 48 0 0 chr11 96095244 96095391 -25748465 + B1_Mm SINE Alu 1 147 0 2 1318 439 81 0 202 chr11 96095391 96095447 -25748409 + Lx LINE L1 6609 6654 0 2 1318 1582 37 16 0 chr11 96095494 96095684 -25748172 - B2_Mm1t SINE B2 0 193 1 2 1318 291 289 21 105 chr11 96095896 96096039 -25747817 + MT2B LTR ERVL 154 284 -317 2 1318 667 197 45 8 chr11 96095918 96096051 -25747805 + B1_Mur2 SINE Alu 11 148 -1 2 1318 231 36 0 0 chr11 96096051 96096079 -25747777 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1318 303 315 46 12 chr11 96096081 96096214 -25747642 - MIR SINE MIR -130 138 3 2 1318 289 235 0 0 chr11 96096481 96096549 -25747307 + (CAG)n Simple_repeat Simple_repeat 1 68 0 2 1318 467 297 62 71 chr11 96097110 96097320 -25746536 + ID_B1 SINE B4 1 208 -16 2 1318 752 134 8 0 chr11 96097346 96097480 -25746376 + (GA)n Simple_repeat Simple_repeat 2 136 0 2 1318 274 310 110 58 chr11 96097655 96097809 -25746047 + B4A SINE B4 63 224 -68 2 1318 740 179 14 29 chr11 96097676 96097814 -25746042 + B1_Mus2 SINE Alu 11 146 -1 2 1318 1164 83 0 0 chr11 96097816 96097961 -25745895 + B1_Mus2 SINE Alu 1 145 -2 2 1318 240 244 56 44 chr11 96098284 96098328 -25745528 - B1F2 SINE Alu -10 107 18 2 1318 250 240 40 0 chr11 96098328 96098378 -25745478 - B4A SINE B4 -152 140 89 2 1318 528 16 0 0 chr11 96098402 96098463 -25745393 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1318 1432 57 17 0 chr11 96098463 96098638 -25745218 - B2_Mm2 SINE B2 -17 178 1 2 1318 504 222 25 22 chr11 96098729 96098876 -25744980 - B1_Mur3 SINE Alu 0 149 1 2 1318 275 266 28 111 chr11 96098876 96098902 -25744954 - MT2B LTR ERVL -447 154 141 2 1318 309 263 64 26 chr11 96098901 96098979 -25744877 - B1_Mus1 SINE Alu -55 93 13 2 1318 777 284 50 0 chr11 96098991 96099230 -25744626 - L1MB7 LINE L1 -120 6064 5814 2 1318 635 308 0 0 chr11 96099294 96099440 -25744416 - RSINE1 SINE B4 -17 148 3 2 1318 395 265 78 35 chr11 96099440 96099581 -25744275 - L1MB7 LINE L1 -352 5826 5680 2 1318 596 290 24 72 chr11 96099588 96099796 -25744060 - B3A SINE B2 0 198 1 2 1318 340 288 58 64 chr11 96100162 96100318 -25743538 + RLTR14 LTR ERV1 221 375 -7 2 1318 940 272 96 81 chr11 96100396 96100617 -25743239 - L1MB7 LINE L1 -1046 5100 4890 2 1318 1209 48 0 39 chr11 96100617 96100770 -25743086 + B1_Mus1 SINE Alu 2 148 0 2 1318 940 272 96 81 chr11 96100770 96100944 -25742912 - L1MB7 LINE L1 -1257 4889 4699 2 1318 920 176 0 14 chr11 96100971 96101115 -25742741 + B1_Mur2 SINE Alu 7 148 -1 2 1318 200 341 142 8 chr11 96101386 96101513 -25742343 + MIR SINE MIR 38 181 -81 2 1318 1070 87 0 6 chr11 96101868 96102042 -25741814 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 2 1318 1262 41 0 0 chr11 96102096 96102242 -25741614 + B1_Mus2 SINE Alu 2 147 0 2 1318 618 251 149 8 chr11 96102258 96102446 -25741410 + ID_B1 SINE B4 2 224 -68 2 1318 681 13 0 0 chr11 96102455 96102533 -25741323 + (GGA)n Simple_repeat Simple_repeat 2 79 0 2 1318 23 0 0 0 chr11 96102830 96102853 -25741003 + AT_rich Low_complexity Low_complexity 1 23 0 2 1318 455 251 51 145 chr11 96102900 96102942 -25740914 + B3A SINE B2 1 40 -158 2 1318 906 151 14 0 chr11 96102942 96103088 -25740768 + B1_Mus1 SINE Alu 1 148 0 2 1318 1405 74 0 6 chr11 96103091 96103268 -25740588 + B2_Mm2 SINE B2 1 176 -19 2 1318 455 251 51 145 chr11 96103268 96103435 -25740421 + B3A SINE B2 41 194 -4 2 1318 1239 124 11 5 chr11 96103459 96103645 -25740211 + B2_Mm1t SINE B2 1 187 -6 2 1318 912 121 62 28 chr11 96103656 96103801 -25740055 + B1_Mur4 SINE Alu 1 150 0 2 1318 231 36 0 0 chr11 96104200 96104228 -25739628 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1318 1512 193 143 11 chr11 96104228 96104584 -25739272 + MTD LTR MaLR 17 419 0 2 1318 267 223 26 51 chr11 96104672 96104780 -25739076 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 1318 3142 44 28 10 chr11 96104780 96105169 -25738687 + MTA_Mm LTR MaLR 1 396 0 2 1318 8027 63 38 3 chr11 96105169 96106230 -25737626 + MTA_Mm-int LTR MaLR 1 1098 0 2 1318 3333 41 5 8 chr11 96106230 96106627 -25737229 + MTA_Mm LTR MaLR 1 396 0 2 1318 267 223 26 51 chr11 96106627 96106672 -25737184 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1318 339 67 0 0 chr11 96106689 96106734 -25737122 - HAL1-3A_ME LINE L1 -839 2019 1975 2 1318 288 134 58 29 chr11 96106752 96106890 -25736966 + (TG)n Simple_repeat Simple_repeat 1 142 0 2 1318 251 260 51 13 chr11 96106933 96107011 -25736845 + B1F SINE Alu 64 144 -5 3 1318 373 237 38 143 chr11 96106947 96107080 -25736776 - B1F2 SINE Alu -30 119 1 3 1318 453 189 38 50 chr11 96107080 96107112 -25736744 - ID SINE ID -147 77 47 3 1318 536 235 113 31 chr11 96107133 96107295 -25736561 - B3 SINE B2 0 216 44 3 1318 21 0 0 0 chr11 96107370 96107391 -25736465 + GC_rich Low_complexity Low_complexity 1 21 0 3 1318 393 258 32 43 chr11 96107419 96107512 -25736344 - RSINE1 SINE B4 -31 134 43 3 1318 22 0 0 0 chr11 96107799 96107821 -25736035 + AT_rich Low_complexity Low_complexity 1 22 0 3 1318 447 250 0 0 chr11 96108026 96108106 -25735750 + B4A SINE B4 139 218 -74 3 1318 278 50 0 24 chr11 96108106 96108147 -25735709 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3 1318 219 304 53 18 chr11 96108345 96108402 -25735454 + ID4 SINE ID 1 59 -24 3 1318 299 244 70 0 chr11 96108529 96108615 -25735241 + L1MB2 LINE L1 6034 6125 -46 3 1318 457 236 0 0 chr11 96108615 96108704 -25735152 + B3A SINE B2 2 90 -108 3 1318 675 264 18 66 chr11 96108709 96108875 -25734981 + B3 SINE B2 39 196 -2 3 1318 1123 271 41 51 chr11 96108891 96108905 -25734951 - B4A SINE B4 0 292 279 3 1318 378 0 0 0 chr11 96108905 96108947 -25734909 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1318 189 107 0 0 chr11 96108947 96108974 -25734882 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1318 1123 271 41 51 chr11 96108974 96109253 -25734603 - B4A SINE B4 -14 278 2 3 1318 1057 236 0 55 chr11 96109434 96109550 -25734306 + B3 SINE B2 2 111 -105 3 1318 1312 92 11 16 chr11 96109550 96109737 -25734119 - B2_Mm1t SINE B2 -7 186 1 3 1318 1057 236 0 55 chr11 96109737 96109840 -25734016 + B3 SINE B2 112 209 -7 3 1318 389 133 67 0 chr11 96109857 96109917 -25733939 + B1_Mus1 SINE Alu 2 65 -83 3 1318 278 273 26 13 chr11 96109917 96109935 -25733921 + B4A SINE B4 87 165 -127 3 1318 263 239 13 53 chr11 96110546 96110621 -25733235 + RLTR25B LTR ERVK 428 499 -529 3 1318 686 133 38 0 chr11 96110560 96110665 -25733191 + B1_Mur4 SINE Alu 42 150 0 3 1318 674 287 50 58 chr11 96110677 96111036 -25732820 + L1ME3 LINE L1 5676 6031 -131 3 1318 225 203 0 86 chr11 96111190 96111260 -25732596 - ID4 SINE ID -19 64 1 3 1318 638 193 133 23 chr11 96111326 96111504 -25732352 + B3 SINE B2 2 192 -3 3 1318 253 203 5 9 chr11 96111524 96111579 -25732277 - MIRc SINE MIR -49 159 106 3 1318 575 222 15 38 chr11 96111580 96111711 -25732145 + B1F SINE Alu 1 128 -21 3 1318 308 96 0 37 chr11 96111895 96111949 -25731907 + (GGA)n Simple_repeat Simple_repeat 2 53 0 3 1318 180 120 39 20 chr11 96111937 96111988 -25731868 + GA-rich Low_complexity Low_complexity 1 52 0 3 1318 365 0 22 0 chr11 96112665 96112710 -25731146 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1318 495 0 0 0 chr11 96112710 96112764 -25731092 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1318 417 109 0 0 chr11 96114573 96114637 -25729219 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1318 249 33 0 0 chr11 96116230 96116260 -25727596 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1318 690 215 27 27 chr11 96118597 96118745 -25725111 + B1_Mur2 SINE Alu 2 149 0 3 1318 229 90 113 0 chr11 96118767 96118811 -25725045 + B1_Mus2 SINE Alu 57 133 -14 3 1318 285 256 70 31 chr11 96118811 96119115 -25724741 - RMER17D2 LTR ERVK -343 466 157 3 1318 222 37 0 0 chr11 96119145 96119172 -25724684 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1318 298 319 0 0 chr11 96119491 96119563 -25724293 - ID4_ SINE ID -9 74 3 3 1318 252 43 0 61 chr11 96121102 96121151 -25722705 + (TCC)n Simple_repeat Simple_repeat 3 48 0 3 1318 297 0 0 0 chr11 96121328 96121361 -25722495 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1318 405 0 0 0 chr11 96121361 96121405 -25722451 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1318 414 0 0 0 chr11 96123551 96123597 -25720259 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1318 623 13 13 0 chr11 96126759 96126835 -25717021 + (GGGAGA)n Simple_repeat Simple_repeat 6 82 0 3 1318 270 0 0 0 chr11 96127212 96127242 -25716614 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1318 201 74 0 0 chr11 96127809 96127836 -25716020 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1318 285 128 0 0 chr11 96128028 96128075 -25715781 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1318 207 0 0 0 chr11 96129619 96129642 -25714214 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1318 261 0 0 0 chr11 96130033 96130062 -25713794 + (CTG)n Simple_repeat Simple_repeat 1 29 0 3 1318 26 64 0 0 chr11 96133154 96133201 -25710655 + GC_rich Low_complexity Low_complexity 1 47 0 3 1318 23 0 0 0 chr11 96135138 96135161 -25708695 + GC_rich Low_complexity Low_complexity 1 23 0 3 1318 225 189 38 127 chr11 96135431 96135510 -25708346 - MLT1G LTR MaLR -225 366 295 3 1318 441 0 0 0 chr11 96136327 96136376 -25707480 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1318 25 0 0 0 chr11 96137693 96137718 -25706138 + AT_rich Low_complexity Low_complexity 1 25 0 3 1318 315 0 0 0 chr11 96138444 96138479 -25705377 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1318 194 0 39 0 chr11 96138686 96138712 -25705144 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 3 1318 279 0 0 0 chr11 96139303 96139334 -25704522 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1318 537 144 0 0 chr11 96139755 96139859 -25703997 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1318 330 26 0 0 chr11 96141883 96141922 -25701934 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1318 257 244 19 6 chr11 96143589 96143750 -25700106 + CT-rich Low_complexity Low_complexity 2 164 0 3 1318 226 175 63 0 chr11 96144074 96144137 -25699719 + CT-rich Low_complexity Low_complexity 5 71 0 3 1318 239 214 0 0 chr11 96144178 96144220 -25699636 + C-rich Low_complexity Low_complexity 3 44 0 3 1318 25 65 0 0 chr11 96145825 96145871 -25697985 + GC_rich Low_complexity Low_complexity 1 46 0 3 1318 213 180 0 0 chr11 96146236 96146286 -25697570 + CT-rich Low_complexity Low_complexity 1 50 0 3 1318 432 0 0 0 chr11 96146995 96147043 -25696813 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1318 311 239 0 96 chr11 96150277 96150402 -25693454 + PB1D10 SINE Alu 3 115 -2 3 1318 405 0 0 0 chr11 96150422 96150467 -25693389 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1318 288 0 0 0 chr11 96150467 96150498 -25693358 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1318 621 0 0 0 chr11 96150607 96150676 -25693180 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1318 256 304 0 25 chr11 96150906 96150987 -25692869 + GA-rich Low_complexity Low_complexity 3 81 0 3 1318 420 20 0 0 chr11 96151644 96151693 -25692163 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1318 444 19 0 0 chr11 96151857 96151910 -25691946 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1318 568 59 24 0 chr11 96153888 96153973 -25689883 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1318 237 33 0 0 chr11 96156721 96156751 -25687105 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1318 531 0 0 0 chr11 96160157 96160216 -25683640 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1318 249 167 0 0 chr11 96162812 96162866 -25680990 + (TAA)n Simple_repeat Simple_repeat 1 54 0 3 1318 261 139 0 0 chr11 96165584 96165627 -25678229 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1318 27 29 0 0 chr11 96166645 96166679 -25677177 + AT_rich Low_complexity Low_complexity 1 34 0 3 1318 206 81 27 0 chr11 96169756 96169793 -25674063 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 3 1318 187 116 22 44 chr11 96170516 96170561 -25673295 + CT-rich Low_complexity Low_complexity 3 46 0 3 1318 212 79 0 50 chr11 96170770 96170810 -25673046 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1318 185 132 26 0 chr11 96172349 96172387 -25671469 + CT-rich Low_complexity Low_complexity 2 40 0 3 1318 183 161 54 0 chr11 96172830 96172886 -25670970 + CT-rich Low_complexity Low_complexity 2 60 0 3 1318 318 106 0 0 chr11 96177185 96177232 -25666624 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 1318 204 143 0 0 chr11 96180298 96180340 -25663516 + (CCG)n Simple_repeat Simple_repeat 2 43 0 3 1318 197 65 32 0 chr11 96180827 96180858 -25662998 + (GGA)n Simple_repeat Simple_repeat 1 32 0 3 1318 445 178 0 27 chr11 96181888 96181998 -25661858 + GA-rich Low_complexity Low_complexity 2 108 0 3 1318 477 0 0 0 chr11 96182735 96182788 -25661068 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 1318 468 0 0 0 chr11 96183055 96183107 -25660749 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1318 378 42 0 0 chr11 96183276 96183324 -25660532 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1318 203 182 0 0 chr11 96184392 96184425 -25659431 + polypurine Low_complexity Low_complexity 2 34 0 3 1318 423 38 0 0 chr11 96185120 96185173 -25658683 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1318 714 44 0 0 chr11 96186015 96186105 -25657751 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1318 325 102 34 0 chr11 96187727 96187786 -25656070 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1318 233 258 149 53 chr11 96189372 96189466 -25654390 - MER34 LTR ERV1 -357 185 83 3 1318 453 81 0 0 chr11 96189634 96189696 -25654160 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1318 576 0 0 0 chr11 96189930 96189994 -25653862 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1318 226 250 17 0 chr11 96190058 96190118 -25653738 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1318 279 191 0 0 chr11 96190926 96190994 -25652862 + CT-rich Low_complexity Low_complexity 1 68 0 3 1318 801 82 0 0 chr11 96190994 96191104 -25652752 + (TG)n Simple_repeat Simple_repeat 2 111 0 3 1318 253 188 25 0 chr11 96192546 96192626 -25651230 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1318 369 62 0 0 chr11 96192868 96192916 -25650940 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 4 1318 333 0 0 0 chr11 96196285 96196322 -25647534 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1318 227 291 46 11 chr11 96196987 96197074 -25646782 + MIR3 SINE MIR 97 186 -22 4 1318 294 29 0 0 chr11 96201100 96201135 -25642721 + (TGG)n Simple_repeat Simple_repeat 2 36 0 4 1318 333 0 0 0 chr11 96201459 96201496 -25642360 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1318 297 0 0 0 chr11 96202004 96202037 -25641819 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1318 862 122 14 0 chr11 96202599 96202747 -25641109 + (TC)n Simple_repeat Simple_repeat 2 151 0 4 1318 217 298 0 0 chr11 96202805 96202862 -25640994 + CT-rich Low_complexity Low_complexity 2 58 0 4 1318 288 0 0 0 chr11 96203658 96203690 -25640166 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1318 180 0 0 0 chr11 96204357 96204377 -25639479 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4 1319 513 104 0 0 chr11 96206870 96206947 -25636909 + (CGG)n Simple_repeat Simple_repeat 2 78 0 4 1319 30 27 0 0 chr11 96208444 96208481 -25635375 + AT_rich Low_complexity Low_complexity 1 37 0 4 1319 294 98 0 0 chr11 96211794 96211845 -25632011 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1319 188 300 86 0 chr11 96212009 96212079 -25631777 + L3 LINE CR1 2031 2106 -2383 4 1319 189 0 0 0 chr11 96213713 96213734 -25630122 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1319 204 40 0 0 chr11 96216156 96216181 -25627675 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1319 23 33 0 0 chr11 96216896 96216926 -25626930 + AT_rich Low_complexity Low_complexity 1 30 0 4 1319 189 0 0 0 chr11 96217251 96217272 -25626584 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1319 686 208 35 0 chr11 96217381 96217525 -25626331 + MER5A1 DNA MER1_type 18 166 0 4 1319 525 252 6 64 chr11 96217665 96217822 -25626034 + B1F SINE Alu 1 148 -1 4 1319 23 0 0 0 chr11 96217839 96217862 -25625994 + AT_rich Low_complexity Low_complexity 1 23 0 4 1319 864 203 43 29 chr11 96217879 96218087 -25625769 + B3 SINE B2 1 211 -5 4 1319 504 0 0 0 chr11 96218139 96218195 -25625661 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1319 311 219 49 0 chr11 96219055 96219137 -25624719 + MIR3 SINE MIR 87 172 -36 4 1319 360 0 0 0 chr11 96219972 96220012 -25623844 + (TTA)n Simple_repeat Simple_repeat 3 42 0 4 1319 369 282 35 88 chr11 96220016 96220187 -25623669 - RSINE1 SINE B4 -1 164 3 4 1319 677 222 61 23 chr11 96220191 96220373 -25623483 - B3 SINE B2 -9 186 6 4 1319 1106 61 134 6 chr11 96220401 96220565 -25623291 + B2_Mm2 SINE B2 2 186 -9 4 1319 632 36 12 0 chr11 96220565 96220648 -25623208 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 4 1319 418 248 124 0 chr11 96220856 96220969 -25622887 + B1_Mus2 SINE Alu 2 128 -19 4 1319 902 137 0 7 chr11 96221005 96221145 -25622711 - B1_Mur2 SINE Alu -9 140 2 4 1319 1032 188 9 24 chr11 96221156 96221369 -25622487 - B3 SINE B2 0 216 7 4 1319 1651 16 0 0 chr11 96221383 96221575 -25622281 - B2_Mm1a SINE B2 0 193 2 4 1319 220 395 0 0 chr11 96221604 96221680 -25622176 - ID4 SINE ID -4 79 4 4 1319 868 64 128 0 chr11 96221854 96221979 -25621877 - B1_Mus2 SINE Alu -6 141 1 4 1319 847 150 224 6 chr11 96222081 96222255 -25621601 + B3 SINE B2 1 212 -4 4 1319 387 346 64 11 chr11 96222636 96222823 -25621033 - MIRc SINE MIR -62 206 10 4 1319 374 57 19 0 chr11 96222920 96222973 -25620883 + (CAT)n Simple_repeat Simple_repeat 1 54 0 4 1319 607 211 0 0 chr11 96223303 96223426 -25620430 + ID_B1 SINE B4 101 223 -1 4 1319 746 154 8 0 chr11 96223574 96223691 -25620165 + B1_Mus2 SINE Alu 24 141 -6 4 1319 234 150 0 0 chr11 96223768 96223808 -25620048 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 4 1319 180 0 0 0 chr11 96223825 96223845 -25620011 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 4 1319 240 111 0 0 chr11 96223845 96223889 -25619967 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 1319 873 68 0 0 chr11 96223896 96224013 -25619843 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 4 1319 348 24 0 0 chr11 96224027 96224068 -25619788 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 4 1319 710 210 13 53 chr11 96224216 96224367 -25619489 - B1_Mur1 SINE Alu -1 148 4 4 1319 207 0 0 0 chr11 96225300 96225323 -25618533 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1319 696 119 0 0 chr11 96225656 96225765 -25618091 + (GA)n Simple_repeat Simple_repeat 2 110 0 4 1319 419 101 0 43 chr11 96228990 96229083 -25614773 + (A)n Simple_repeat Simple_repeat 1 89 0 4 1319 414 0 0 0 chr11 96231200 96231246 -25612610 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1319 438 325 50 29 chr11 96232150 96232361 -25611495 + MIR SINE MIR 39 260 -8 4 1319 432 0 0 0 chr11 96232808 96232856 -25611000 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1319 474 18 0 0 chr11 96232856 96232910 -25610946 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1319 217 275 48 29 chr11 96233502 96233605 -25610251 + MIRm SINE MIR 42 156 -120 4 1319 1656 42 0 0 chr11 96234524 96234716 -25609140 - B2_Mm1a SINE B2 0 193 2 4 1319 280 277 24 100 chr11 96234781 96234876 -25608980 - ID SINE ID -207 85 2 4 1319 373 245 61 10 chr11 96234876 96234975 -25608881 - PB1D10 SINE Alu -1 116 13 4 1319 310 364 50 0 chr11 96234978 96235077 -25608779 + L2a LINE L2 3323 3426 0 4 1319 448 227 221 28 chr11 96236730 96236826 -25607030 + B3 SINE B2 1 119 -97 4 1319 1108 80 0 0 chr11 96236826 96236963 -25606893 + B1_Mm SINE Alu 2 138 -9 4 1319 258 0 23 45 chr11 96236963 96237007 -25606849 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1319 448 227 221 28 chr11 96237007 96237090 -25606766 + B3 SINE B2 120 215 -1 4 1319 626 259 67 43 chr11 96237466 96237676 -25606180 + B3 SINE B2 2 216 0 4 1319 730 267 48 14 chr11 96237714 96237923 -25605933 + ID_B1 SINE B4 1 216 -8 4 1319 27 0 0 0 chr11 96238040 96238067 -25605789 + AT_rich Low_complexity Low_complexity 1 27 0 4 1319 405 0 0 0 chr11 96238664 96238709 -25605147 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1319 522 225 91 23 chr11 96238895 96239027 -25604829 - MTD LTR MaLR -53 366 226 4 1319 1119 130 0 0 chr11 96239041 96239296 -25604560 + (TTC)n Simple_repeat Simple_repeat 1 255 0 4 1319 477 135 29 11 chr11 96239296 96239399 -25604457 - B2_Mm1t SINE B2 0 195 94 4 1319 331 286 0 23 chr11 96239424 96239510 -25604346 - MTD LTR MaLR -288 131 48 4 1319 401 151 12 0 chr11 96239541 96239627 -25604229 + GA-rich Low_complexity Low_complexity 2 88 0 4 1319 1201 79 135 31 chr11 96239629 96239851 -25604005 - MusHAL1 LINE L1 -726 1986 1742 4 1319 252 0 0 0 chr11 96240142 96240170 -25603686 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1319 468 0 0 0 chr11 96240171 96240223 -25603633 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1319 188 363 43 29 chr11 96240242 96240381 -25603475 - L3 LINE CR1 -218 4271 4131 4 1319 23 0 0 0 chr11 96240383 96240406 -25603450 + AT_rich Low_complexity Low_complexity 1 23 0 4 1319 920 260 30 15 chr11 96240406 96240609 -25603247 - B3 SINE B2 -9 207 2 4 1319 521 224 0 6 chr11 96240619 96240776 -25603080 + CT-rich Low_complexity Low_complexity 1 156 0 4 1319 689 245 0 7 chr11 96240781 96240921 -25602935 - B1_Mur2 SINE Alu -5 144 6 4 1319 274 250 0 106 chr11 96240842 96240936 -25602920 - MT2B LTR ERVL -362 239 156 4 1319 198 369 123 0 chr11 96240966 96241088 -25602768 - L3 LINE CR1 -383 4106 3970 4 1319 1241 79 96 0 chr11 96241111 96241289 -25602567 + B2_Mm2 SINE B2 1 195 0 4 1319 793 191 17 0 chr11 96241336 96241581 -25602275 + (TATG)n Simple_repeat Simple_repeat 1 249 0 4 1319 460 309 36 0 chr11 96242089 96242228 -25601628 - MIR SINE MIR -51 211 68 4 1319 890 242 53 0 chr11 96242796 96242986 -25600870 - ID_B1 SINE B4 0 224 25 4 1319 529 172 50 10 chr11 96244892 96244992 -25598864 - B3 SINE B2 -112 104 1 4 1319 864 157 8 0 chr11 96245338 96245472 -25598384 + B1_Mur3 SINE Alu 2 136 -13 4 1319 336 358 76 35 chr11 96245760 96246049 -25597807 + L2c LINE L2 2948 3248 -139 4 1319 334 335 99 63 chr11 96246329 96246613 -25597243 - L3 LINE CR1 -9 4480 4187 4 1319 653 244 182 0 chr11 96246800 96246981 -25596875 - ID_B1 SINE B4 0 224 11 4 1319 562 179 0 104 chr11 96247003 96247128 -25596728 - PB1D9 SINE Alu -3 117 6 4 1319 324 237 0 156 chr11 96247068 96247158 -25596698 - B4A SINE B4 -143 149 74 4 1319 1127 223 0 5 chr11 96247628 96247835 -25596021 - B3 SINE B2 -7 209 4 4 1319 575 267 0 29 chr11 96247845 96247984 -25595872 + ID_B1 SINE B4 89 223 -1 4 1319 348 83 0 0 chr11 96248406 96248454 -25595402 + (CATA)n Simple_repeat Simple_repeat 1 48 0 4 1319 327 177 0 0 chr11 96248601 96248663 -25595193 + CT-rich Low_complexity Low_complexity 1 62 0 4 1319 1139 94 134 0 chr11 96248663 96248834 -25595022 - B2_Mm2 SINE B2 -1 194 1 4 1319 1013 163 62 0 chr11 96248835 96249013 -25594843 - URR1A DNA MER1_type -2 224 36 4 1319 605 275 38 0 chr11 96249031 96249162 -25594694 + ID_B1 SINE B4 66 201 -23 4 1319 474 18 0 0 chr11 96249177 96249232 -25594624 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 1319 564 279 14 0 chr11 96249244 96249384 -25594472 + ID_B1 SINE B4 82 223 -1 4 1319 415 289 61 13 chr11 96249429 96249582 -25594274 - MIRc SINE MIR -81 181 21 4 1319 1000 88 72 7 chr11 96249686 96249824 -25594032 - B1_Mus2 SINE Alu 0 147 1 4 1319 312 312 219 25 chr11 96249833 96250070 -25593786 + L3 LINE CR1 4138 4420 -69 4 1319 934 169 23 20 chr11 96250342 96250538 -25593318 + B2_Mm1t SINE B2 1 198 0 5 1319 813 130 92 0 chr11 96250627 96250758 -25593098 + B1_Mur4 SINE Alu 1 143 -7 5 1319 28 0 0 0 chr11 96250876 96250904 -25592952 + AT_rich Low_complexity Low_complexity 1 28 0 5 1319 765 177 0 0 chr11 96251009 96251156 -25592700 + CT-rich Low_complexity Low_complexity 3 149 0 5 1319 261 0 0 0 chr11 96251158 96251187 -25592669 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 5 1319 366 190 112 12 chr11 96251188 96251268 -25592588 - BC1_Mm scRNA scRNA -59 93 6 5 1319 201 231 0 0 chr11 96252895 96252946 -25590910 - MIR SINE MIR -110 158 111 5 1319 770 184 8 0 chr11 96252959 96253084 -25590772 - B1_Mur1 SINE Alu -13 136 11 5 1319 371 234 126 87 chr11 96253093 96253299 -25590557 - B3 SINE B2 -1 215 2 5 1319 25 0 0 0 chr11 96254138 96254163 -25589693 + AT_rich Low_complexity Low_complexity 1 25 0 5 1319 649 269 67 5 chr11 96254183 96254377 -25589479 - B3 SINE B2 -9 207 2 5 1319 32 57 0 0 chr11 96254447 96254500 -25589356 + AT_rich Low_complexity Low_complexity 1 53 0 5 1319 2854 68 28 13 chr11 96254515 96254903 -25588953 - MTB_Mm LTR MaLR 0 407 14 5 1319 6066 154 72 24 chr11 96254885 96254947 -25588909 - MTB_Mm-int LTR MaLR -11 1247 1190 5 1319 1019 66 81 0 chr11 96254947 96255083 -25588773 - B1_Mus2 SINE Alu 0 147 1 5 1319 6066 154 72 24 chr11 96255083 96256207 -25587649 - MTB_Mm-int LTR MaLR -69 1189 4 5 1319 3154 71 2 7 chr11 96256207 96256616 -25587240 - MTB_Mm LTR MaLR 0 407 1 5 1319 441 300 0 0 chr11 96256633 96256733 -25587123 - RSINE1 SINE B4 -61 104 5 5 1319 476 32 16 0 chr11 96256831 96256893 -25586963 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1319 862 124 41 14 chr11 96256893 96257040 -25586816 - MT-int LTR MaLR -886 212 62 5 1319 921 236 14 19 chr11 96257056 96257072 -25586784 - B3 SINE B2 0 216 198 5 1319 261 0 0 0 chr11 96257072 96257101 -25586755 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 5 1319 921 236 14 19 chr11 96257101 96257300 -25586556 - B3 SINE B2 -19 197 2 5 1319 835 180 197 0 chr11 96257354 96257532 -25586324 - B3 SINE B2 -2 214 2 5 1319 254 344 46 39 chr11 96257561 96257691 -25586165 - MIRb SINE MIR -17 251 121 5 1319 553 279 181 10 chr11 96259230 96259429 -25584427 - MIR SINE MIR -1 261 29 5 1319 1082 118 0 11 chr11 96259678 96259858 -25583998 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1319 1027 90 14 20 chr11 96259868 96260016 -25583840 - B1_Mus1 SINE Alu 0 148 2 5 1319 207 0 0 0 chr11 96261812 96261835 -25582021 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1319 723 226 20 7 chr11 96261866 96262013 -25581843 - B1_Mur1 SINE Alu 0 149 1 5 1319 766 211 13 13 chr11 96262458 96262607 -25581249 + B1_Mur4 SINE Alu 2 150 0 5 1319 459 0 0 0 chr11 96262671 96262722 -25581134 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5 1319 445 174 100 20 chr11 96262735 96262835 -25581021 - B1_Mur2 SINE Alu 0 149 42 5 1319 244 0 0 158 chr11 96262838 96262958 -25580898 + (CTCTG)n Simple_repeat Simple_repeat 5 105 0 5 1319 287 203 0 33 chr11 96262959 96263020 -25580836 - PB1D9 SINE Alu -61 59 1 5 1319 795 273 23 28 chr11 96263033 96263248 -25580608 - ID_B1 SINE B4 -8 216 3 5 1319 626 295 36 66 chr11 96263422 96263723 -25580133 - B4A SINE B4 0 292 1 5 1319 536 296 26 7 chr11 96263727 96263880 -25579976 - B4A SINE B4 -56 236 81 5 1319 1168 169 14 40 chr11 96263891 96264113 -25579743 - B3 SINE B2 0 216 1 5 1319 296 143 18 0 chr11 96264395 96264451 -25579405 + CT-rich Low_complexity Low_complexity 2 58 0 5 1319 882 179 0 7 chr11 96264451 96264592 -25579264 - B1_Mur4 SINE Alu -5 145 6 5 1319 320 255 77 58 chr11 96264639 96264743 -25579113 + MER5A1 DNA MER1_type 7 112 -54 5 1319 852 82 0 0 chr11 96264746 96264881 -25578975 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 1319 507 17 0 0 chr11 96264883 96264943 -25578913 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1319 217 258 204 36 chr11 96264977 96265114 -25578742 - MIRc SINE MIR -98 170 11 5 1319 246 200 0 0 chr11 96265339 96265379 -25578477 + L2a LINE L2 3377 3416 -10 5 1319 411 98 0 0 chr11 96267435 96267496 -25576360 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1319 1037 227 27 60 chr11 96267496 96267787 -25576069 - B4A SINE B4 -7 285 3 5 1319 508 257 7 21 chr11 96267806 96267949 -25575907 - L1MA10 LINE L1 -7 6327 6187 5 1319 289 311 66 25 chr11 96268022 96268144 -25575712 - PB1D10 SINE Alu -21 128 2 5 1319 213 284 144 19 chr11 96268164 96268268 -25575588 - MIR SINE MIR -61 147 31 5 1319 324 0 0 0 chr11 96269824 96269860 -25573996 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1319 342 0 0 0 chr11 96269860 96269897 -25573959 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1319 184 237 0 0 chr11 96270996 96271034 -25572822 - MIRc SINE MIR -146 122 85 5 1319 466 320 109 51 chr11 96271159 96271416 -25572440 + B4 SINE B4 2 273 -19 5 1319 216 186 0 23 chr11 96271418 96271462 -25572394 + GA-rich Low_complexity Low_complexity 2 44 0 5 1319 849 146 0 0 chr11 96271514 96271644 -25572212 + B3 SINE B2 1 130 -86 5 1319 273 282 51 13 chr11 96272187 96272266 -25571590 + MIRc SINE MIR 54 135 -133 5 1319 508 298 60 66 chr11 96272673 96272856 -25571000 + MER20 DNA MER1_type 34 215 -4 5 1319 438 221 240 0 chr11 96273057 96273161 -25570695 + ID_B1 SINE B4 92 220 -4 5 1319 725 169 97 0 chr11 96273163 96273287 -25570569 + B1_Mur3 SINE Alu 3 138 -11 5 1319 207 0 0 0 chr11 96273287 96273310 -25570546 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1319 875 206 83 16 chr11 96273383 96273575 -25570281 - B3 SINE B2 -11 205 1 5 1319 591 296 53 5 chr11 96273579 96273786 -25570070 + L1MB3 LINE L1 5820 6036 -147 5 1319 418 304 72 0 chr11 96273818 96273956 -25569900 + RSINE1 SINE B4 2 149 -16 5 1319 659 293 29 23 chr11 96274050 96274248 -25569608 - B3A SINE B2 -7 209 10 5 1319 228 186 117 91 chr11 96274180 96274257 -25569599 - B4 SINE B4 -212 80 2 5 1319 276 301 129 43 chr11 96274465 96274604 -25569252 + MIR3 SINE MIR 38 188 -20 5 1319 847 255 28 42 chr11 96276005 96276218 -25567638 - B3 SINE B2 -1 215 6 5 1319 765 296 10 16 chr11 96276227 96276419 -25567437 - B3A SINE B2 -6 192 2 5 1319 294 292 11 11 chr11 96276583 96276673 -25567183 + CT-rich Low_complexity Low_complexity 3 92 0 5 1319 656 236 21 0 chr11 96276918 96277058 -25566798 - B1_Mm SINE Alu 0 147 5 5 1319 1074 188 14 36 chr11 96277173 96277357 -25566499 + B3 SINE B2 1 181 -35 5 1319 285 29 0 0 chr11 96277357 96277391 -25566465 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1319 1074 188 14 36 chr11 96277391 96277427 -25566429 + B3 SINE B2 182 216 0 5 1319 253 254 252 0 chr11 96278042 96278053 -25565803 - B1F SINE Alu -2 147 89 5 1319 344 242 176 0 chr11 96278053 96278144 -25565712 - ID_B1 SINE B4 -13 211 105 5 1319 253 254 252 0 chr11 96278144 96278157 -25565699 - B1F SINE Alu -2 88 1 5 1319 251 73 0 47 chr11 96278806 96278849 -25565007 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 5 1319 270 233 61 55 chr11 96279168 96279357 -25564499 + MIR SINE MIR 27 204 -4 5 1319 1123 43 22 0 chr11 96279439 96279577 -25564279 + B1_Mur4 SINE Alu 1 141 -9 5 1319 459 0 0 0 chr11 96279577 96279628 -25564228 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1319 187 382 26 35 chr11 96279768 96279882 -25563974 + MIRc SINE MIR 19 131 -137 5 1319 1249 42 0 0 chr11 96280065 96280208 -25563648 + B1_Mm SINE Alu 1 143 -4 5 1319 726 44 0 0 chr11 96280210 96280300 -25563556 + (GAA)n Simple_repeat Simple_repeat 2 91 0 5 1319 1000 219 9 14 chr11 96280369 96280582 -25563274 - B3 SINE B2 0 216 5 5 1319 377 296 67 72 chr11 96280824 96281155 -25562701 - RLTR15 LTR ERVK -30 329 1 5 1319 315 0 0 0 chr11 96281199 96281234 -25562622 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1319 324 277 113 60 chr11 96281276 96281426 -25562430 + MLT1J LTR MaLR 307 464 -48 5 1319 181 313 69 29 chr11 96281592 96281694 -25562162 + L3 LINE CR1 2923 3028 -1461 5 1319 595 261 7 0 chr11 96281825 96281963 -25561893 - B1F SINE Alu -8 141 3 5 1319 282 56 0 0 chr11 96282628 96282664 -25561192 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 5 1319 414 0 0 0 chr11 96283705 96283751 -25560105 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1319 186 128 0 0 chr11 96283782 96283821 -25560035 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1319 387 0 0 0 chr11 96283852 96283895 -25559961 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1319 730 216 43 0 chr11 96283901 96284040 -25559816 + B1_Mur2 SINE Alu 5 149 0 5 1319 252 330 34 51 chr11 96283936 96284054 -25559802 + RLTR25B LTR ERVK 441 556 -472 5 1319 234 176 0 0 chr11 96284059 96284093 -25559763 + ID4_ SINE ID 4 37 -46 5 1319 2032 166 55 40 chr11 96284107 96284508 -25559348 + MTC LTR MaLR 10 416 -5 5 1319 186 43 0 0 chr11 96284619 96284642 -25559214 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1319 421 350 19 66 chr11 96284662 96284873 -25558983 + MIRb SINE MIR 1 201 -67 5 1319 267 103 0 0 chr11 96285042 96285081 -25558775 + (GGA)n Simple_repeat Simple_repeat 3 41 0 5 1319 324 321 113 7 chr11 96285081 96285222 -25558634 + HAL1-3A_ME LINE L1 2284 2439 -419 5 1319 289 291 138 15 chr11 96285324 96285515 -25558341 + MIRc SINE MIR 56 267 -1 5 1319 262 324 101 107 chr11 96285517 96285863 -25557993 + LTR85a LTR Gypsy? 41 384 -318 5 1319 279 292 79 55 chr11 96286038 96286165 -25557691 - MIR SINE MIR -110 152 23 5 1319 1970 111 11 107 chr11 96286481 96286844 -25557012 - ORR1A4 LTR MaLR -1 328 1 6 1319 259 302 0 0 chr11 96286854 96286917 -25556939 + RSINE1 SINE B4 33 95 -70 6 1319 358 203 24 48 chr11 96286950 96287033 -25556823 + B4A SINE B4 15 95 -197 6 1319 549 268 56 0 chr11 96287033 96287175 -25556681 + RSINE1 SINE B4 2 151 -14 6 1319 648 284 13 88 chr11 96287202 96287430 -25556426 + B4A SINE B4 82 292 0 6 1319 330 236 0 0 chr11 96287431 96287554 -25556302 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 1319 452 360 68 8 chr11 96287659 96287911 -25555945 - MER63B DNA AcHobo -29 407 141 6 1319 635 258 77 0 chr11 96287910 96288065 -25555791 - B3A SINE B2 -30 168 2 6 1319 2223 216 11 24 chr11 96288110 96288569 -25555287 - Lx5 LINE L1 -4 7046 6594 6 1319 996 220 18 63 chr11 96288606 96288829 -25555027 - B3 SINE B2 -2 214 2 6 1319 300 252 98 129 chr11 96289331 96289463 -25554393 - B1_Mur3 SINE Alu -21 128 1 6 1319 442 304 214 5 chr11 96289463 96289677 -25554179 - LTR33 LTR ERVL -55 460 202 6 1319 688 216 65 0 chr11 96289789 96289928 -25553928 - B1_Mur1 SINE Alu -1 148 1 6 1319 288 185 0 97 chr11 96289940 96290012 -25553844 - B1_Mur1 SINE Alu -7 142 78 6 1319 334 234 315 0 chr11 96290148 96290259 -25553597 + RSINE1 SINE B4 6 151 -14 6 1319 264 185 0 0 chr11 96290352 96290406 -25553450 + CT-rich Low_complexity Low_complexity 3 56 0 6 1319 254 290 78 29 chr11 96290434 96290537 -25553319 - PB1 SINE Alu -19 108 1 6 1319 182 37 0 36 chr11 96291445 96291473 -25552383 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1319 407 297 25 17 chr11 96291877 96291997 -25551859 - MIRc SINE MIR -28 240 120 6 1319 856 163 18 8 chr11 96291999 96292187 -25551669 + B3 SINE B2 1 190 -3 6 1319 190 326 41 61 chr11 96292193 96292291 -25551565 - MIRc SINE MIR -153 115 20 6 1319 1096 225 0 5 chr11 96292373 96292587 -25551269 + B3 SINE B2 2 214 -2 6 1319 22 0 0 0 chr11 96292593 96292615 -25551241 + AT_rich Low_complexity Low_complexity 1 22 0 6 1319 419 275 45 28 chr11 96292615 96292791 -25551065 + L2a LINE L2 3248 3426 0 6 1319 217 62 83 0 chr11 96294063 96294111 -25549745 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1319 221 174 21 21 chr11 96294111 96294158 -25549698 + CT-rich Low_complexity Low_complexity 2 48 0 6 1319 361 221 0 14 chr11 96294162 96294231 -25549625 - ID4 SINE ID -13 70 3 6 1319 198 0 0 0 chr11 96294252 96294274 -25549582 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 6 1319 693 239 7 0 chr11 96294274 96294412 -25549444 - B1_Mur2 SINE Alu -10 139 1 6 1319 1783 197 24 24 chr11 96294736 96295110 -25548746 - ORR1D1 LTR MaLR 0 374 1 6 1319 1361 101 0 16 chr11 96295130 96295322 -25548534 - B2_Mm2 SINE B2 -6 189 1 6 1319 1079 243 0 0 chr11 96295330 96295544 -25548312 - B3 SINE B2 -2 214 1 6 1319 400 191 0 0 chr11 96295546 96295614 -25548242 - ID_B1 SINE B4 -5 219 152 6 1319 2432 117 91 16 chr11 96295654 96296029 -25547827 - MTB_Mm LTR MaLR -4 403 1 6 1319 533 189 0 10 chr11 96296041 96296137 -25547719 - B1F2 SINE Alu 0 149 55 6 1319 318 157 13 103 chr11 96296084 96296162 -25547694 - MT2B LTR ERVL -341 260 190 6 1319 967 289 11 15 chr11 96296250 96296520 -25547336 + MLT1A0 LTR MaLR 1 269 -96 6 1319 228 35 0 0 chr11 96296764 96296793 -25547063 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 1319 482 167 51 0 chr11 96296799 96296877 -25546979 + B1_Mur3 SINE Alu 60 141 -8 6 1319 636 38 0 0 chr11 96296895 96296974 -25546882 + (GA)n Simple_repeat Simple_repeat 1 79 0 6 1319 312 188 131 48 chr11 96297078 96297162 -25546694 - B3A SINE B2 -36 162 72 6 1319 423 221 80 39 chr11 96297135 96297296 -25546560 - B3A SINE B2 -37 161 47 6 1319 792 250 87 0 chr11 96297491 96297687 -25546169 - ID_B1 SINE B4 -9 215 3 6 1319 244 362 34 8 chr11 96298021 96298138 -25545718 - MLT1I LTR MaLR -275 136 17 6 1319 264 273 15 0 chr11 96298150 96298216 -25545640 + L3b LINE CR1 321 387 -95 6 1319 1328 90 17 6 chr11 96299136 96299314 -25544542 + B2_Mm2 SINE B2 2 181 -14 6 1319 612 40 0 0 chr11 96299314 96299389 -25544467 + (GAAA)n Simple_repeat Simple_repeat 1 75 0 6 1319 187 260 126 78 chr11 96299607 96299745 -25544111 + MIR3 SINE MIR 2 160 -108 6 1319 423 280 64 58 chr11 96300017 96300188 -25543668 + MIR SINE MIR 74 245 -17 6 1319 396 55 0 0 chr11 96301036 96301091 -25542765 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1319 237 330 31 31 chr11 96301285 96301382 -25542474 - MIR SINE MIR -76 132 36 6 1319 305 156 13 0 chr11 96301927 96302004 -25541852 + (TTTA)n Simple_repeat Simple_repeat 2 79 0 6 1319 1239 41 7 0 chr11 96302167 96302314 -25541542 - B1_Mus1 SINE Alu 0 148 1 6 1319 450 0 0 0 chr11 96302337 96302387 -25541469 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 6 1319 410 279 58 0 chr11 96302472 96302576 -25541280 - PB1D10 SINE Alu -2 115 6 6 1319 705 163 64 36 chr11 96302594 96302734 -25541122 - B1_Mur3 SINE Alu 0 149 6 6 1319 812 212 50 71 chr11 96303852 96304050 -25539806 - B3 SINE B2 -5 211 18 6 1319 763 96 0 11 chr11 96304056 96304180 -25539676 - B1_Mus2 SINE Alu 0 147 3 6 1319 328 196 135 71 chr11 96304180 96304217 -25539639 - MT2B LTR ERVL -426 175 131 6 1319 284 289 112 28 chr11 96304419 96304526 -25539330 + MIR SINE MIR 29 144 -64 6 1319 230 160 0 20 chr11 96304694 96304745 -25539111 + (TTG)n Simple_repeat Simple_repeat 1 50 0 6 1319 312 94 0 0 chr11 96305285 96305338 -25538518 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 6 1319 27 0 0 0 chr11 96306007 96306034 -25537822 + AT_rich Low_complexity Low_complexity 1 27 0 6 1319 428 335 42 0 chr11 96306157 96306324 -25537532 - MIR3 SINE MIR -3 205 32 6 1319 233 217 0 0 chr11 96306918 96306964 -25536892 - L1M5 LINE L1 -459 5665 5620 6 1319 802 202 87 39 chr11 96307108 96307144 -25536712 - B3 SINE B2 0 216 181 6 1319 387 41 0 0 chr11 96307144 96307193 -25536663 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1319 802 202 87 39 chr11 96307193 96307362 -25536494 - B3 SINE B2 -36 180 3 6 1319 386 20 20 0 chr11 96307368 96307419 -25536437 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 6 1319 1109 73 0 0 chr11 96307419 96307555 -25536301 - B1_Mus1 SINE Alu -12 136 1 6 1319 513 249 141 43 chr11 96307728 96307913 -25535943 + B3 SINE B2 1 203 -13 6 1319 240 163 0 0 chr11 96307972 96308015 -25535841 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1319 940 145 7 7 chr11 96308038 96308184 -25535672 - B1_Mus1 SINE Alu 0 148 3 6 1319 232 288 79 97 chr11 96310095 96310322 -25533534 + L1MC4 LINE L1 7809 8031 -11 6 1319 1133 221 0 0 chr11 96310418 96310626 -25533230 + B3 SINE B2 3 210 -6 6 1319 703 274 87 73 chr11 96310646 96310709 -25533147 - B4A SINE B4 0 292 244 6 1319 2516 67 45 0 chr11 96310709 96311022 -25532834 - ORR1A2 LTR MaLR 0 327 1 6 1319 703 274 87 73 chr11 96311022 96311245 -25532611 - B4A SINE B4 -49 243 2 6 1319 197 278 93 0 chr11 96311245 96311299 -25532557 - L2c LINE L2 -12 3375 3317 6 1319 991 97 41 14 chr11 96311304 96311451 -25532405 + B2_Mm2 SINE B2 3 153 -42 6 1319 411 38 0 0 chr11 96311451 96311504 -25532352 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1319 781 194 43 24 chr11 96311504 96311520 -25532336 + B2_Mm1t SINE B2 155 169 -24 6 1319 310 356 112 44 chr11 96311547 96311842 -25532014 - L2c LINE L2 -107 3280 2967 6 1319 527 254 56 0 chr11 96311842 96311968 -25531888 + B1_Mur1 SINE Alu 3 135 -14 6 1319 310 356 112 44 chr11 96311968 96312010 -25531846 - L2c LINE L2 -421 2966 2921 6 1319 459 92 0 0 chr11 96312051 96312116 -25531740 + (ATGGTG)n Simple_repeat Simple_repeat 1 65 0 6 1319 1041 157 16 22 chr11 96312122 96312304 -25531552 + URR1A DNA MER1_type 46 226 0 6 1319 772 231 52 17 chr11 96312404 96312595 -25531261 - B3A SINE B2 -14 181 1 6 1319 182 233 0 16 chr11 96312729 96312790 -25531066 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1319 543 197 46 62 chr11 96312866 96312996 -25530860 - B3A SINE B2 -70 128 1 6 1319 833 328 47 8 chr11 96313909 96314167 -25529689 + B4A SINE B4 11 278 -14 6 1319 189 390 0 12 chr11 96314476 96314559 -25529297 + L2b LINE L2 3289 3370 -5 6 1319 802 169 44 0 chr11 96315063 96315199 -25528657 + B1_Mur4 SINE Alu 2 143 -7 6 1319 1085 242 0 5 chr11 96315226 96315438 -25528418 + B3 SINE B2 6 216 0 6 1319 847 245 33 9 chr11 96315449 96315659 -25528197 - B3 SINE B2 -1 215 1 6 1319 187 362 52 21 chr11 96315659 96315755 -25528101 + L2c LINE L2 3283 3381 -6 6 1319 254 189 0 36 chr11 96315755 96315810 -25528046 + GA-rich Low_complexity Low_complexity 1 53 0 6 1319 342 269 6 12 chr11 96316951 96317120 -25526736 + (TG)n Simple_repeat Simple_repeat 1 168 0 6 1319 651 26 0 0 chr11 96319724 96319801 -25524055 + (TC)n Simple_repeat Simple_repeat 1 77 0 6 1319 985 146 7 0 chr11 96319875 96320019 -25523837 - B1_Mur1 SINE Alu 0 149 5 6 1319 631 139 47 24 chr11 96320609 96320779 -25523077 + GA-rich Low_complexity Low_complexity 2 175 0 6 1319 897 150 7 7 chr11 96320833 96320974 -25522882 - B1_Mur4 SINE Alu -9 141 1 6 1319 663 48 0 0 chr11 96321024 96321107 -25522749 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 1319 983 107 11 11 chr11 96321779 96321959 -25521897 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1319 873 294 21 52 chr11 96321963 96322250 -25521606 - B4 SINE B4 -7 285 8 6 1319 279 109 65 0 chr11 96324219 96324265 -25519591 + U5 snRNA snRNA 3 51 -65 6 1319 333 68 0 0 chr11 96324952 96324996 -25518860 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1319 23 108 0 0 chr11 96325813 96325906 -25517950 + GC_rich Low_complexity Low_complexity 1 93 0 7 1319 507 275 14 0 chr11 96327211 96327353 -25516503 - RSINE1 SINE B4 0 165 22 7 1319 269 343 0 29 chr11 96327367 96327436 -25516420 - ID4_ SINE ID -10 73 7 7 1319 186 71 0 0 chr11 96329398 96329426 -25514430 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1319 267 31 0 0 chr11 96329664 96329696 -25514160 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1319 189 0 0 0 chr11 96329797 96329818 -25514038 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7 1319 541 124 235 17 chr11 96330057 96330172 -25513684 + B1_Mur4 SINE Alu 9 148 -2 7 1319 282 257 0 91 chr11 96330509 96330586 -25513270 - ID4_ SINE ID -6 77 8 7 1319 275 250 0 65 chr11 96330747 96330824 -25513032 + ID4_ SINE ID 2 73 -10 7 1319 1103 33 26 0 chr11 96330831 96330983 -25512873 + (TG)n Simple_repeat Simple_repeat 2 157 0 7 1319 373 287 0 41 chr11 96330991 96331089 -25512767 - RSINE1 SINE B4 -69 96 3 7 1319 230 312 62 31 chr11 96331089 96331209 -25512647 - Tigger15a DNA TcMar -550 165 42 7 1319 660 221 40 11 chr11 96331284 96331458 -25512398 + Lx2B LINE L1 6822 7000 0 7 1319 851 145 7 40 chr11 96331625 96331776 -25512080 - B1_Mur1 SINE Alu -3 146 1 7 1319 203 55 0 53 chr11 96331874 96331912 -25511944 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 7 1319 896 169 0 0 chr11 96331912 96332054 -25511802 - B1_Mur4 SINE Alu 0 150 9 7 1319 346 216 9 121 chr11 96331957 96332073 -25511783 - MT2B LTR ERVL -344 257 155 7 1319 771 169 38 8 chr11 96332786 96332917 -25510939 - B1_Mur4 SINE Alu -14 136 2 7 1319 1253 103 27 16 chr11 96332960 96333148 -25510708 + B2_Mm2 SINE B2 1 190 -5 7 1319 574 160 28 0 chr11 96333184 96333290 -25510566 - B1_Mur1 SINE Alu 0 149 41 7 1319 405 0 0 0 chr11 96333533 96333578 -25510278 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1319 414 0 0 0 chr11 96333864 96333910 -25509946 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1319 558 200 16 32 chr11 96333964 96334088 -25509768 + RSINE1 SINE B4 3 124 -41 7 1319 666 97 0 0 chr11 96334089 96334202 -25509654 + (CA)n Simple_repeat Simple_repeat 1 113 0 7 1319 195 100 0 0 chr11 96334202 96334232 -25509624 + (CCA)n Simple_repeat Simple_repeat 3 32 0 7 1319 326 267 277 23 chr11 96334232 96334535 -25509321 + L1ME3 LINE L1 5719 6098 -64 7 1319 555 56 0 0 chr11 96334640 96334711 -25509145 + (CCA)n Simple_repeat Simple_repeat 3 73 0 7 1319 201 259 0 18 chr11 96334762 96334817 -25509039 + GA-rich Low_complexity Low_complexity 3 56 0 7 1319 361 241 44 100 chr11 96334919 96335001 -25508855 + B4A SINE B4 1 84 -208 7 1319 342 0 0 0 chr11 96335001 96335039 -25508817 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 7 1319 361 259 52 94 chr11 96335039 96335186 -25508670 + B4A SINE B4 84 225 -67 7 1319 791 250 8 9 chr11 96335327 96335537 -25508319 - B3A SINE B2 -11 205 3 7 1319 366 42 0 0 chr11 96335769 96335817 -25508039 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1319 505 282 94 51 chr11 96335831 96336027 -25507829 - B4A SINE B4 -4 288 84 7 1319 1288 52 12 0 chr11 96336027 96336200 -25507656 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 7 1319 505 282 94 51 chr11 96336200 96336279 -25507577 - B4A SINE B4 -209 83 1 7 1319 316 224 0 0 chr11 96336737 96336804 -25507052 + LTR85a LTR Gypsy? 15 81 -621 7 1319 261 163 0 0 chr11 96336808 96336857 -25506999 + (TTA)n Simple_repeat Simple_repeat 1 49 0 7 1319 473 138 138 0 chr11 96336857 96336951 -25506905 - PB1D7 SINE Alu -12 108 2 7 1319 535 264 43 19 chr11 96337324 96337486 -25506370 - MER20 DNA MER1_type 0 219 54 7 1320 257 128 0 21 chr11 96338171 96338219 -25505637 + (TTA)n Simple_repeat Simple_repeat 1 47 0 7 1320 912 266 63 30 chr11 96338715 96338986 -25504870 - Lx8 LINE L1 -196 7277 6998 7 1320 775 171 48 7 chr11 96338989 96339136 -25504720 - ID_B1 SINE B4 -69 155 3 7 1320 289 309 88 7 chr11 96339151 96339288 -25504568 - PB1D10 SINE Alu 0 149 2 7 1320 368 159 58 0 chr11 96339291 96339360 -25504496 + MER3 DNA MER1_type 137 209 0 7 1320 1107 292 80 6 chr11 96339713 96340051 -25503805 - MLT1A0 LTR MaLR 0 365 3 7 1320 254 29 29 0 chr11 96340488 96340523 -25503333 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1320 225 234 87 77 chr11 96341791 96341999 -25501857 - RLTR15 LTR ERVK -18 341 132 7 1320 364 178 109 27 chr11 96342110 96342220 -25501636 - RLTR15 LTR ERVK -238 121 3 7 1320 516 32 0 0 chr11 96342969 96343031 -25500825 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1320 514 250 80 8 chr11 96343032 96343157 -25500699 - RSINE1 SINE B4 -31 134 1 7 1320 1664 214 141 67 chr11 96343347 96343843 -25500013 - MT2A LTR ERVL 0 533 1 7 1320 1523 252 124 34 chr11 96343906 96344494 -25499362 - L1MC3 LINE L1 -207 7578 6938 7 1320 241 220 0 0 chr11 96344508 96344558 -25499298 - B1_Mur1 SINE Alu 0 149 100 7 1320 216 86 0 0 chr11 96344600 96344635 -25499221 + (CAGAGA)n Simple_repeat Simple_repeat 6 40 0 7 1320 284 211 260 0 chr11 96344687 96344723 -25499133 - L1MC3 LINE L1 -1658 6337 6283 7 1320 753 70 0 0 chr11 96344723 96344823 -25499033 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 7 1320 284 222 251 2 chr11 96344823 96344916 -25498940 - L1MC3 LINE L1 -1713 6282 6144 7 1320 2434 102 37 3 chr11 96344919 96345294 -25498562 + MTC LTR MaLR 34 421 0 7 1320 271 285 154 16 chr11 96345297 96345479 -25498377 - L1MC3 LINE L1 -1646 6139 5933 7 1320 831 251 48 55 chr11 96345493 96345784 -25498072 - B4A SINE B4 0 292 4 7 1320 3110 242 158 48 chr11 96345930 96347094 -25496762 - Lx8 LINE L1 0 7473 6174 7 1320 441 0 0 0 chr11 96347094 96347143 -25496713 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1320 3110 242 158 48 chr11 96347143 96347216 -25496640 - Lx8 LINE L1 -1300 6173 6100 7 1320 940 258 55 53 chr11 96347683 96348080 -25495776 - L1MEf LINE L1 -4576 1624 1227 7 1320 285 294 0 0 chr11 96348087 96348155 -25495701 - ID2 SINE ID -13 70 3 7 1320 598 250 87 27 chr11 96348337 96348522 -25495334 + B3A SINE B2 2 197 -1 7 1320 450 107 11 67 chr11 96348554 96348644 -25495212 - B1_Mur4 SINE Alu -21 129 45 7 1320 759 308 5 50 chr11 96348708 96348930 -25494926 - B4 SINE B4 -73 219 8 7 1320 1463 73 15 25 chr11 96348987 96349184 -25494672 - B2_Mm2 SINE B2 0 195 1 7 1320 27 0 0 0 chr11 96349202 96349229 -25494627 + AT_rich Low_complexity Low_complexity 1 27 0 7 1320 922 251 33 185 chr11 96349367 96349940 -25493916 - L1M4 LINE L1 -1814 4332 3847 7 1320 357 24 0 0 chr11 96352244 96352286 -25491570 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1320 892 238 72 5 chr11 96352668 96352862 -25490994 - B3 SINE B2 -9 207 1 7 1320 1068 52 0 0 chr11 96352890 96353025 -25490831 + (CA)n Simple_repeat Simple_repeat 2 136 0 7 1320 387 0 0 0 chr11 96353676 96353719 -25490137 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1320 474 83 0 0 chr11 96355393 96355465 -25488391 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1320 1007 178 69 0 chr11 96355465 96355639 -25488217 - B3 SINE B2 -28 188 3 7 1320 210 143 0 0 chr11 96355733 96355768 -25488088 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 7 1320 267 79 0 0 chr11 96355770 96355808 -25488048 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 7 1320 403 115 51 0 chr11 96355897 96355975 -25487881 + GA-rich Low_complexity Low_complexity 4 85 0 7 1320 541 226 82 7 chr11 96355982 96356129 -25487727 + RSINE1 SINE B4 6 163 -2 7 1320 370 250 0 0 chr11 96356193 96356273 -25487583 + ID4_ SINE ID 1 80 -3 7 1320 449 216 46 114 chr11 96356900 96357031 -25486825 - RSINE1 SINE B4 0 165 44 7 1320 969 144 7 0 chr11 96357037 96357183 -25486673 - B1_Mus1 SINE Alu 0 148 2 7 1320 237 240 0 0 chr11 96357191 96357241 -25486615 + CT-rich Low_complexity Low_complexity 4 53 0 7 1320 380 97 16 0 chr11 96357260 96357322 -25486534 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 7 1320 300 268 107 24 chr11 96357328 96357412 -25486444 - U6 snRNA snRNA -7 100 10 7 1320 438 69 0 0 chr11 96357430 96357488 -25486368 + (TTA)n Simple_repeat Simple_repeat 2 59 0 7 1320 1029 211 36 0 chr11 96357497 96357691 -25486165 - ID_B1 SINE B4 -18 206 6 7 1320 2113 133 73 19 chr11 96357946 96358315 -25485541 + Lx2 LINE L1 6609 6997 0 7 1320 384 272 26 0 chr11 96358481 96358595 -25485261 + B1F1 SINE Alu 2 118 -31 7 1320 416 269 0 19 chr11 96358613 96358719 -25485137 + PB1 SINE Alu 22 125 -2 7 1320 215 171 0 47 chr11 96358726 96358769 -25485087 + G-rich Low_complexity Low_complexity 2 42 0 7 1320 207 0 0 0 chr11 96359150 96359173 -25484683 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1320 756 57 0 0 chr11 96359211 96359317 -25484539 + (TG)n Simple_repeat Simple_repeat 2 107 0 7 1320 362 241 111 15 chr11 96361059 96361194 -25482662 + L1ME2z LINE L1 6296 6443 -1 7 1320 869 205 60 0 chr11 96362122 96362307 -25481549 + B3A SINE B2 1 196 -2 7 1320 441 0 0 0 chr11 96362809 96362858 -25480998 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1320 537 92 0 0 chr11 96363521 96363597 -25480259 + (TC)n Simple_repeat Simple_repeat 1 76 0 7 1320 709 157 39 8 chr11 96363601 96363729 -25480127 - B1_Mus1 SINE Alu -1 147 16 7 1320 338 255 25 119 chr11 96363729 96363757 -25480099 - ID_B1 SINE B4 0 220 80 7 1320 1349 84 21 5 chr11 96363765 96363956 -25479900 - B2_Mm2 SINE B2 0 195 2 7 1320 758 212 14 7 chr11 96363959 96364106 -25479750 - B1_Mur1 SINE Alu 0 149 2 7 1320 428 91 0 15 chr11 96365219 96365286 -25478570 + (TCC)n Simple_repeat Simple_repeat 2 67 0 7 1320 294 261 182 0 chr11 96365392 96365480 -25478376 - PB1D9 SINE Alu -5 115 12 7 1320 480 139 0 0 chr11 96366682 96366761 -25477095 + (G)n Simple_repeat Simple_repeat 1 79 0 8 1320 278 310 53 45 chr11 96366926 96367058 -25476798 + Lx8 LINE L1 6895 7027 -446 8 1320 1330 175 39 8 chr11 96367089 96367343 -25476513 - ORR1B2 LTR MaLR -47 320 59 8 1320 230 203 0 48 chr11 96367324 96367386 -25476470 - ORR1B2 LTR MaLR -244 102 44 8 1320 597 170 19 80 chr11 96367372 96367533 -25476323 - ORR1B2 LTR MaLR -240 138 1 8 1320 832 293 101 55 chr11 96367533 96367931 -25475925 + Lx8 LINE L1 7056 7471 -2 8 1320 198 0 0 0 chr11 96368081 96368103 -25475753 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 8 1320 714 179 0 8 chr11 96368103 96368220 -25475636 - B2_Mm2 SINE B2 -78 117 1 8 1320 485 199 209 64 chr11 96368253 96368425 -25475431 - B3A SINE B2 0 198 2 8 1320 305 316 52 67 chr11 96368622 96368832 -25475024 - MIR SINE MIR -9 253 47 8 1320 836 108 63 28 chr11 96370038 96370181 -25473675 + B1_Mur4 SINE Alu 1 148 -2 8 1320 270 136 0 0 chr11 96370196 96370240 -25473616 + (TAA)n Simple_repeat Simple_repeat 2 45 0 8 1320 183 80 0 0 chr11 96370265 96370290 -25473566 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1320 253 262 46 128 chr11 96370355 96370532 -25473324 - B4A SINE B4 -36 256 89 8 1320 482 263 16 33 chr11 96370808 96370930 -25472926 - B4A SINE B4 -171 121 2 8 1320 204 40 0 0 chr11 96371952 96371977 -25471879 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 8 1320 313 289 0 0 chr11 96371979 96372055 -25471801 - PB1D10 SINE Alu -8 109 34 8 1320 291 382 37 26 chr11 96373347 96373538 -25470318 + L2 LINE L2 1179 1371 -2048 8 1320 354 61 0 0 chr11 96374174 96374223 -25469633 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1320 566 231 46 0 chr11 96374449 96374579 -25469277 + B3A SINE B2 13 148 -50 8 1320 318 225 28 14 chr11 96375454 96375526 -25468330 - RSINE1 SINE B4 -91 74 2 8 1320 1618 233 20 75 chr11 96375792 96376288 -25467568 + RMER19C LTR ERVK 138 606 -5 8 1320 300 264 0 65 chr11 96377441 96377534 -25466322 - RSINE1 SINE B4 0 165 79 8 1320 210 188 21 222 chr11 96377556 96377700 -25466156 - PB1D10 SINE Alu 0 117 3 8 1320 192 77 0 0 chr11 96377935 96377961 -25465895 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 8 1320 236 322 44 57 chr11 96378032 96378190 -25465666 + MIRb SINE MIR 2 157 -111 8 1320 246 286 47 78 chr11 96378479 96378608 -25465248 + MIRb SINE MIR 143 267 -1 8 1320 416 243 108 36 chr11 96378939 96379050 -25464806 + B1F2 SINE Alu 4 122 -27 8 1320 423 0 0 0 chr11 96379067 96379114 -25464742 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 8 1320 333 0 0 0 chr11 96379117 96379154 -25464702 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1320 851 219 47 24 chr11 96379464 96379675 -25464181 - B3 SINE B2 0 216 1 8 1320 756 243 57 5 chr11 96380369 96380580 -25463276 + ID_B1 SINE B4 1 222 -2 8 1320 16225 53 1 0 chr11 96380665 96383340 -25460516 - L1Md_F2 LINE L1 -8 6574 3899 8 1320 351 44 0 0 chr11 96383399 96383444 -25460412 + (GAA)n Simple_repeat Simple_repeat 2 46 0 8 1320 415 256 100 45 chr11 96383510 96383710 -25460146 - L1MA9 LINE L1 -35 6277 6067 8 1320 958 234 5 0 chr11 96383799 96383991 -25459865 - B3 SINE B2 -21 195 3 8 1320 297 301 21 0 chr11 96384002 96384095 -25459761 - PB1D10 SINE Alu -13 104 10 8 1320 834 110 0 0 chr11 96384603 96384749 -25459107 + (TG)n Simple_repeat Simple_repeat 2 147 0 8 1320 548 270 106 21 chr11 96384846 96384878 -25458978 - B3 SINE B2 0 216 187 8 1320 225 65 0 0 chr11 96384878 96384909 -25458947 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 1320 548 270 106 21 chr11 96384909 96385065 -25458791 - B3 SINE B2 -30 186 14 8 1320 352 306 50 41 chr11 96385262 96385532 -25458324 + MTEa LTR MaLR 77 371 -8 8 1320 259 227 151 54 chr11 96386458 96386551 -25457305 - MamRep1161 DNA TcMar -813 144 43 8 1320 783 168 293 0 chr11 96386943 96387110 -25456746 - B3 SINE B2 0 216 1 8 1320 648 111 0 0 chr11 96388356 96388455 -25455401 + (TG)n Simple_repeat Simple_repeat 1 99 0 8 1320 450 211 438 20 chr11 96388458 96388477 -25455379 - B4A SINE B4 -3 289 271 8 1320 426 85 0 0 chr11 96388477 96388536 -25455320 + (CCTG)n Simple_repeat Simple_repeat 2 60 0 8 1320 450 211 438 20 chr11 96388536 96388719 -25455137 - B4A SINE B4 -22 270 2 8 1320 21 36 0 0 chr11 96388725 96388753 -25455103 + AT_rich Low_complexity Low_complexity 1 28 0 8 1320 45 19 0 0 chr11 96388819 96388871 -25454985 + AT_rich Low_complexity Low_complexity 1 52 0 8 1320 732 223 7 7 chr11 96388871 96389011 -25454845 - B1_Mur3 SINE Alu -5 144 5 8 1320 468 212 24 0 chr11 96389737 96389822 -25454034 - B1_Mus2 SINE Alu -59 88 2 8 1320 323 324 42 14 chr11 96389958 96390102 -25453754 - B1F SINE Alu -1 148 1 8 1320 2927 143 116 8 chr11 96390201 96390717 -25453139 - RMER15 LTR ERVL -3 572 1 8 1320 196 170 0 36 chr11 96390807 96390862 -25452994 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 8 1320 306 0 0 0 chr11 96390863 96390897 -25452959 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1320 619 191 57 35 chr11 96390899 96390911 -25452945 - RSINE1 SINE B4 -11 154 143 8 1320 252 0 0 0 chr11 96390911 96390939 -25452917 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1320 619 191 57 35 chr11 96390939 96391067 -25452789 - RSINE1 SINE B4 -23 142 11 8 1320 349 271 6 12 chr11 96391190 96391351 -25452505 + CT-rich Low_complexity Low_complexity 3 162 0 8 1320 928 213 5 68 chr11 96391911 96392133 -25451723 + B3 SINE B2 2 209 -7 8 1320 236 326 55 22 chr11 96392182 96392273 -25451583 - RSINE1 SINE B4 0 165 72 8 1320 363 181 0 0 chr11 96392285 96392357 -25451499 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1320 228 258 0 16 chr11 96392369 96392432 -25451424 - B4A SINE B4 -229 63 2 8 1320 245 121 191 29 chr11 96392465 96392533 -25451323 + ID4 SINE ID 3 81 -2 8 1320 863 218 0 77 chr11 96393977 96394171 -25449685 - B3 SINE B2 -37 179 1 8 1320 189 0 0 0 chr11 96394174 96394195 -25449661 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1320 342 0 0 0 chr11 96394284 96394322 -25449534 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1320 475 204 0 0 chr11 96394347 96394440 -25449416 + B3A SINE B2 5 97 -101 8 1320 444 275 9 9 chr11 96394670 96394774 -25449082 + PB1D10 SINE Alu 2 106 -11 8 1320 450 65 0 0 chr11 96394774 96394836 -25449020 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 8 1320 1051 95 24 0 chr11 96394872 96395167 -25448689 + (TCTA)n Simple_repeat Simple_repeat 1 302 0 8 1320 1056 164 113 0 chr11 96395187 96395400 -25448456 - Lx9 LINE L1 -113 7531 7295 8 1320 702 192 176 27 chr11 96395990 96396177 -25447679 - B3 SINE B2 0 216 2 8 1320 267 287 30 83 chr11 96396745 96396878 -25446978 + MIRb SINE MIR 19 144 -124 8 1320 182 33 67 0 chr11 96397485 96397515 -25446341 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 8 1320 291 310 132 34 chr11 96400574 96400808 -25443048 + L1MC4a LINE L1 7609 7865 -17 8 1320 779 200 0 20 chr11 96400812 96400960 -25442896 + B1_Mur3 SINE Alu 5 149 0 8 1320 234 0 0 0 chr11 96403720 96403746 -25440110 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1320 464 288 76 61 chr11 96404130 96404393 -25439463 + Tigger15a DNA TcMar 9 275 -440 8 1320 366 198 53 32 chr11 96404430 96404524 -25439332 + B1F SINE Alu 54 149 0 8 1320 183 184 0 0 chr11 96404526 96404564 -25439292 + GA-rich Low_complexity Low_complexity 2 39 0 8 1320 337 219 41 0 chr11 96404638 96404711 -25439145 + ID4 SINE ID 8 83 0 8 1320 186 43 0 0 chr11 96404727 96404750 -25439106 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1320 339 342 68 27 chr11 96404985 96405207 -25438649 - MIR SINE MIR -16 246 16 8 1320 968 205 97 39 chr11 96405332 96405591 -25438265 + B4A SINE B4 1 274 -18 8 1320 300 120 0 0 chr11 96405641 96405691 -25438165 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1320 732 214 44 92 chr11 96405925 96406152 -25437704 + B3A SINE B2 1 216 0 8 1320 524 196 6 0 chr11 96407036 96407215 -25436641 + GA-rich Low_complexity Low_complexity 1 180 0 8 1320 565 112 39 55 chr11 96407202 96407457 -25436399 + (CAGAGA)n Simple_repeat Simple_repeat 1 250 0 8 1320 249 290 0 0 chr11 96407457 96407519 -25436337 + GA-rich Low_complexity Low_complexity 4 65 0 8 1320 237 301 0 40 chr11 96408464 96408540 -25435316 + BC1_Mm scRNA scRNA 16 88 -64 8 1320 351 113 0 0 chr11 96408590 96408643 -25435213 + (CCA)n Simple_repeat Simple_repeat 1 53 0 8 1320 223 311 0 0 chr11 96408648 96408709 -25435147 - ID2 SINE ID -8 75 15 8 1320 459 0 0 0 chr11 96408738 96408789 -25435067 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 8 1320 457 256 167 8 chr11 96408851 96408977 -25434879 + ID_B1 SINE B4 79 224 0 8 1320 22 0 0 0 chr11 96409523 96409545 -25434311 + AT_rich Low_complexity Low_complexity 1 22 0 8 1320 420 20 0 0 chr11 96409559 96409608 -25434248 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1320 187 217 0 32 chr11 96409669 96409731 -25434125 + (TATG)n Simple_repeat Simple_repeat 1 60 0 8 1320 401 208 0 0 chr11 96409743 96409820 -25434036 - B3A SINE B2 -27 171 95 8 1320 1432 66 22 0 chr11 96410067 96410250 -25433606 + B2_Mm2 SINE B2 3 189 -6 8 1320 441 0 0 0 chr11 96410850 96410899 -25432957 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1320 245 111 44 0 chr11 96413162 96413207 -25430649 + (CATA)n Simple_repeat Simple_repeat 1 47 0 8 1320 384 222 0 0 chr11 96413298 96413370 -25430486 + ID4 SINE ID 2 73 -10 8 1320 347 141 0 13 chr11 96413373 96413452 -25430404 + GA-rich Low_complexity Low_complexity 1 78 0 8 1320 183 255 0 0 chr11 96414245 96414292 -25429564 - L3 LINE CR1 -322 4167 4121 8 1320 21 0 0 0 chr11 96414821 96414842 -25429014 + AT_rich Low_complexity Low_complexity 1 21 0 8 1320 450 143 0 0 chr11 96418385 96418462 -25425394 + (CA)n Simple_repeat Simple_repeat 2 78 0 9 1320 222 278 0 0 chr11 96419945 96419999 -25423857 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1320 639 125 0 0 chr11 96420018 96420122 -25423734 + (TC)n Simple_repeat Simple_repeat 1 104 0 9 1320 236 274 172 33 chr11 96420609 96420824 -25423032 - MIRb SINE MIR -17 251 7 9 1320 834 237 10 5 chr11 96421031 96421226 -25422630 - ID_B1 SINE B4 -28 196 1 9 1320 288 287 114 8 chr11 96422250 96422373 -25421483 - MIRc SINE MIR -16 252 117 9 1320 657 215 114 52 chr11 96423076 96423287 -25420569 - ID_B1 SINE B4 0 224 1 9 1320 26 0 0 0 chr11 96423392 96423418 -25420438 + AT_rich Low_complexity Low_complexity 1 26 0 9 1320 243 88 0 0 chr11 96423521 96423555 -25420301 + (TA)n Simple_repeat Simple_repeat 2 35 0 9 1320 576 228 98 0 chr11 96423656 96423779 -25420077 + B1_Mur1 SINE Alu 2 136 -13 9 1320 747 72 0 0 chr11 96424070 96424181 -25419675 + (TTTTG)n Simple_repeat Simple_repeat 2 112 0 9 1320 1063 23 46 0 chr11 96424181 96424312 -25419544 - B1_Mus1 SINE Alu -10 138 2 9 1320 413 282 206 10 chr11 96425092 96425296 -25418560 + B4A SINE B4 3 246 -46 9 1320 22 0 0 0 chr11 96425443 96425465 -25418391 + AT_rich Low_complexity Low_complexity 1 22 0 9 1320 1195 182 10 5 chr11 96425474 96425678 -25418178 + B3 SINE B2 1 205 -11 9 1320 599 241 43 97 chr11 96425842 96426049 -25417807 + B3A SINE B2 3 198 0 9 1320 273 225 42 0 chr11 96426639 96426710 -25417146 - B3A SINE B2 -124 74 1 9 1320 293 253 57 57 chr11 96426939 96427027 -25416829 - PB1D10 SINE Alu -57 92 5 9 1320 383 271 75 30 chr11 96427358 96427491 -25416365 + L1ME4a LINE L1 5763 5901 -223 9 1320 237 210 17 138 chr11 96427636 96427752 -25416104 + MT2B LTR ERVL 164 265 -336 9 1320 539 228 0 42 chr11 96427653 96427795 -25416061 + B1_Mur1 SINE Alu 14 149 0 9 1320 353 231 0 13 chr11 96428131 96428210 -25415646 - ID4 SINE ID -1 82 5 9 1320 296 204 0 0 chr11 96428403 96428457 -25415399 + B4 SINE B4 1 54 -238 9 1320 1109 169 5 10 chr11 96431289 96431498 -25412358 - B3 SINE B2 -7 209 2 9 1320 521 246 16 0 chr11 96431562 96431688 -25412168 - B1F SINE Alu -21 128 1 9 1320 210 294 32 0 chr11 96431933 96432059 -25411797 + (CACG)n Simple_repeat Simple_repeat 4 133 0 9 1320 621 227 0 0 chr11 96432450 96432569 -25411287 + RSINE1 SINE B4 3 121 -44 9 1320 21 36 0 0 chr11 96432613 96432641 -25411215 + AT_rich Low_complexity Low_complexity 1 28 0 9 1320 269 182 18 0 chr11 96432760 96432815 -25411041 + ID4 SINE ID 2 57 -26 9 1320 302 116 29 0 chr11 96433433 96433502 -25410354 + (TCTCTG)n Simple_repeat Simple_repeat 1 71 0 9 1320 513 0 0 0 chr11 96433514 96433571 -25410285 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 9 1320 216 0 0 0 chr11 96433772 96433796 -25410060 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1320 663 216 102 11 chr11 96433936 96434123 -25409733 - B3 SINE B2 0 216 13 9 1320 218 105 0 26 chr11 96434252 96434291 -25409565 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1320 183 232 0 0 chr11 96434454 96434510 -25409346 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 9 1320 235 165 48 58 chr11 96434517 96434620 -25409236 + (TATAA)n Simple_repeat Simple_repeat 4 105 0 9 1320 252 350 94 22 chr11 96435397 96435578 -25408278 - L2 LINE L2 -432 2987 2794 9 1320 228 111 0 0 chr11 96435578 96435614 -25408242 + (TTA)n Simple_repeat Simple_repeat 3 38 0 9 1320 264 324 0 0 chr11 96436610 96436684 -25407172 + C-rich Low_complexity Low_complexity 4 77 0 9 1320 303 140 0 0 chr11 96437913 96437963 -25405893 + (TTG)n Simple_repeat Simple_repeat 2 51 0 9 1320 591 15 0 0 chr11 96438691 96438759 -25405097 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1320 686 53 21 0 chr11 96438902 96438996 -25404860 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 9 1320 23 0 0 0 chr11 96442466 96442489 -25401367 + AT_rich Low_complexity Low_complexity 1 23 0 9 1320 341 313 57 3 chr11 96442657 96442785 -25401071 - MIR SINE MIR -12 256 117 9 1320 712 172 56 82 chr11 96444532 96444728 -25399128 - B2_Mm2 SINE B2 -3 192 2 9 1320 25 0 0 0 chr11 96444897 96444922 -25398934 + AT_rich Low_complexity Low_complexity 1 25 0 9 1320 283 305 19 28 chr11 96446065 96446173 -25397683 - PB1D10 SINE Alu -10 107 1 9 1320 226 359 51 56 chr11 96446276 96446471 -25397385 - MER58B DNA MER1_type 0 341 148 9 1320 198 0 0 0 chr11 96446479 96446501 -25397355 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1320 334 241 54 0 chr11 96446612 96446714 -25397142 + PB1D10 SINE Alu 1 114 -6 9 1320 230 318 0 0 chr11 96447163 96447229 -25396627 - B4A SINE B4 -14 278 213 9 1320 242 214 54 0 chr11 96447236 96447292 -25396564 - B4A SINE B4 -232 60 2 9 1320 268 321 13 0 chr11 96448349 96448436 -25395420 - ID4 SINE ID -59 93 6 9 1320 987 214 68 19 chr11 96448454 96448584 -25395272 - B3 SINE B2 -1 215 73 9 1320 216 0 0 0 chr11 96448584 96448608 -25395248 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1320 225 0 0 0 chr11 96448608 96448632 -25395224 + (GA)n Simple_repeat Simple_repeat 1 25 0 9 1320 987 214 68 19 chr11 96448632 96448705 -25395151 - B3 SINE B2 -144 72 2 9 1320 612 264 7 40 chr11 96449054 96449081 -25394775 - B4A SINE B4 0 292 271 9 1320 336 102 0 0 chr11 96449081 96449130 -25394726 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1320 612 234 334 36 chr11 96449130 96449315 -25394541 - B4A SINE B4 -22 270 26 9 1320 1021 126 109 0 chr11 96450447 96450621 -25393235 + B3 SINE B2 1 193 -23 9 1320 324 0 0 0 chr11 96450623 96450659 -25393197 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 1320 658 249 92 0 chr11 96450816 96450989 -25392867 + B3 SINE B2 13 201 -15 9 1320 225 0 0 0 chr11 96451137 96451162 -25392694 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1320 387 0 0 0 chr11 96451441 96451484 -25392372 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1320 467 317 64 32 chr11 96453395 96453416 -25390440 - B4A SINE B4 -1 291 271 9 1320 501 17 0 0 chr11 96453416 96453474 -25390382 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1320 467 317 64 32 chr11 96453474 96453732 -25390124 - B4A SINE B4 -22 270 4 9 1320 304 269 21 97 chr11 96454309 96454453 -25389403 + B1F1 SINE Alu 1 133 -16 9 1320 370 268 0 0 chr11 96454483 96454565 -25389291 + ID2 SINE ID 2 83 0 9 1320 501 290 0 0 chr11 96454663 96454839 -25389017 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 9 1320 656 126 201 19 chr11 96458357 96458529 -25385327 + B2_Mm2 SINE B2 2 209 -7 9 1320 290 246 132 86 chr11 96458565 96458716 -25385140 - RSINE1 SINE B4 -3 162 5 9 1320 267 79 0 0 chr11 96459010 96459048 -25384808 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 9 1320 242 206 15 0 chr11 96460655 96460723 -25383133 + (TATG)n Simple_repeat Simple_repeat 2 70 0 9 1320 248 288 105 8 chr11 96460980 96461113 -25382743 - L2c LINE L2 0 3387 3242 9 1320 246 219 0 0 chr11 96461288 96461352 -25382504 + (CATA)n Simple_repeat Simple_repeat 2 65 0 9 1320 414 0 0 0 chr11 96462249 96462295 -25381561 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 9 1320 21 36 0 0 chr11 96462775 96462803 -25381053 + AT_rich Low_complexity Low_complexity 1 28 0 9 1320 413 235 42 34 chr11 96463559 96463678 -25380178 - B1F SINE Alu -29 120 1 9 1320 450 167 0 0 chr11 96464472 96464556 -25379300 + GA-rich Low_complexity Low_complexity 1 84 0 9 1320 717 195 34 102 chr11 96466975 96467181 -25376675 + B3A SINE B2 1 192 -6 9 1321 536 303 86 97 chr11 96469197 96469661 -25374195 + L1ME1 LINE L1 5706 6164 0 9 1321 32 0 0 0 chr11 96470507 96470539 -25373317 + AT_rich Low_complexity Low_complexity 1 32 0 9 1321 321 26 0 0 chr11 96470820 96470858 -25372998 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1321 1217 55 0 0 chr11 96470870 96471016 -25372840 - B1_Mus2 SINE Alu -1 146 1 9 1321 231 266 46 130 chr11 96471120 96471169 -25372687 + ID SINE ID 44 83 -141 9 1321 382 177 38 0 chr11 96471169 96471248 -25372608 + B1_Mur4 SINE Alu 2 83 -67 9 1321 941 184 53 38 chr11 96471326 96471535 -25372321 - B3 SINE B2 -4 212 1 9 1321 342 0 0 0 chr11 96472190 96472228 -25371628 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1321 572 268 8 118 chr11 96472665 96472902 -25370954 + B3 SINE B2 1 211 -5 9 1321 273 57 0 0 chr11 96473193 96473228 -25370628 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1321 372 345 119 11 chr11 96473424 96473685 -25370171 - L2c LINE L2 -49 3338 3050 9 1321 294 179 0 0 chr11 96473690 96473746 -25370110 + A-rich Low_complexity Low_complexity 1 56 0 9 1321 717 210 91 27 chr11 96473771 96473957 -25369899 + B3A SINE B2 1 198 0 9 1321 182 246 40 68 chr11 96475248 96475322 -25368534 + MER5A DNA MER1_type 43 114 -75 9 1321 482 242 52 111 chr11 96475506 96475678 -25368178 + RSINE1 SINE B4 4 165 0 9 1321 1242 41 0 0 chr11 96476347 96476494 -25367362 + B1_Mm SINE Alu 1 147 0 9 1321 297 297 30 30 chr11 96476551 96476666 -25367190 + B1F SINE Alu 13 127 -22 9 1321 579 264 43 43 chr11 96476694 96476904 -25366952 + ID_B1 SINE B4 5 214 -10 9 1321 21 0 0 0 chr11 96477091 96477112 -25366744 + AT_rich Low_complexity Low_complexity 1 21 0 9 1321 282 116 0 0 chr11 96477754 96477797 -25366059 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1321 239 209 0 0 chr11 96478179 96478222 -25365634 + G-rich Low_complexity Low_complexity 1 43 0 9 1321 22 70 0 0 chr11 96478510 96478553 -25365303 + AT_rich Low_complexity Low_complexity 1 43 0 1 1321 222 282 12 25 chr11 96478565 96478645 -25365211 + MIRc SINE MIR 77 155 -113 1 1321 189 0 0 0 chr11 96479709 96479730 -25364126 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1321 213 119 0 0 chr11 96479777 96479819 -25364037 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 1 1321 225 108 0 0 chr11 96479821 96479858 -25363998 + (TTGG)n Simple_repeat Simple_repeat 1 37 0 1 1321 243 0 0 0 chr11 96479987 96480014 -25363842 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1321 266 206 0 14 chr11 96480106 96480180 -25363676 + CT-rich Low_complexity Low_complexity 2 74 0 1 1321 540 0 0 0 chr11 96481219 96481279 -25362577 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1321 303 194 55 101 chr11 96483987 96484096 -25359760 + PB1D10 SINE Alu 13 116 -1 1 1321 294 29 0 0 chr11 96484665 96484700 -25359156 + (TTA)n Simple_repeat Simple_repeat 1 35 0 1 1321 351 0 0 0 chr11 96485472 96485511 -25358345 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1321 213 225 0 0 chr11 96485630 96485670 -25358186 + T-rich Low_complexity Low_complexity 2 41 0 1 1321 219 329 14 0 chr11 96488244 96488314 -25355542 + GA-rich Low_complexity Low_complexity 6 76 0 1 1321 607 191 90 22 chr11 96488971 96489105 -25354751 - B1_Mur3 SINE Alu -6 143 1 1 1321 669 192 19 8 chr11 96489957 96490228 -25353628 + (CATA)n Simple_repeat Simple_repeat 1 274 0 1 1321 216 0 0 0 chr11 96490979 96491003 -25352853 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1321 378 0 0 0 chr11 96493337 96493379 -25350477 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1 1321 1280 112 16 11 chr11 96493428 96493618 -25350238 + B2_Mm2 SINE B2 5 195 0 1 1321 216 0 0 0 chr11 96493797 96493821 -25350035 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1321 429 20 0 0 chr11 96494257 96494307 -25349549 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1321 266 106 21 0 chr11 96495015 96495062 -25348794 + (TCC)n Simple_repeat Simple_repeat 3 50 0 1 1321 216 130 0 0 chr11 96495061 96495107 -25348749 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1321 25 0 0 0 chr11 96496550 96496575 -25347281 + AT_rich Low_complexity Low_complexity 1 25 0 1 1321 913 229 62 0 chr11 96497146 96497338 -25346518 - B3 SINE B2 -12 204 1 1 1321 282 56 0 0 chr11 96497475 96497511 -25346345 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1321 525 262 0 0 chr11 96497527 96497634 -25346222 - RSINE1 SINE B4 -45 120 14 1 1321 836 201 0 0 chr11 96497706 96497855 -25346001 - B1_Mur3 SINE Alu 0 149 1 1 1321 542 261 31 0 chr11 96497927 96498057 -25345799 + B1F SINE Alu 5 138 -11 1 1321 243 88 0 0 chr11 96498057 96498091 -25345765 + (TGG)n Simple_repeat Simple_repeat 1 34 0 1 1321 756 273 76 0 chr11 96498096 96498294 -25345562 + ID_B1 SINE B4 12 224 0 1 1321 525 215 0 0 chr11 96498401 96498494 -25345362 - B1_Mur3 SINE Alu -56 93 1 1 1321 333 0 0 0 chr11 96499815 96499852 -25344004 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1321 357 254 295 7 chr11 96499858 96499997 -25343859 - B4A SINE B4 -25 267 89 1 1321 419 182 25 49 chr11 96500005 96500086 -25343770 - B4A SINE B4 -212 80 2 1 1321 1151 209 0 0 chr11 96500115 96500321 -25343535 + B3 SINE B2 2 207 -9 2 1321 377 175 9 28 chr11 96500566 96500672 -25343184 + GA-rich Low_complexity Low_complexity 1 104 0 3 1321 706 175 12 26 chr11 96500685 96501124 -25342732 + GA-rich Low_complexity Low_complexity 1 432 0 3 1321 184 338 61 24 chr11 96501351 96501433 -25342423 - MIR SINE MIR -126 136 52 4 1321 759 180 0 0 chr11 96501568 96501696 -25342160 - B1_Mur4 SINE Alu -21 129 2 5 1321 337 271 65 77 chr11 96501696 96501755 -25342101 - B4 SINE B4 -203 89 33 6 1321 457 290 42 42 chr11 96501737 96501881 -25341975 - RSINE1 SINE B4 -18 147 4 7 1321 464 241 0 35 chr11 96502360 96502476 -25341380 + PB1D10 SINE Alu 1 112 -5 8 1321 1147 49 28 0 chr11 96502496 96502639 -25341217 + B1_Mus1 SINE Alu 1 147 -1 9 1321 387 294 88 102 chr11 96502678 96502894 -25340962 + ID_B1 SINE B4 4 216 -8 1 1321 1275 144 79 23 chr11 96503441 96503655 -25340201 - URR1A DNA MER1_type 0 226 1 1 1321 234 0 0 0 chr11 96504975 96505001 -25338855 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1321 207 0 0 0 chr11 96505001 96505023 -25338833 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1321 198 0 0 0 chr11 96505023 96505045 -25338811 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 1321 454 169 180 0 chr11 96505146 96505235 -25338621 + B1_Mus1 SINE Alu 1 105 -43 1 1321 234 0 0 0 chr11 96507523 96507549 -25336307 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1321 189 0 0 0 chr11 96508064 96508085 -25335771 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 1 1321 24 32 0 0 chr11 96509753 96509784 -25334072 + AT_rich Low_complexity Low_complexity 1 31 0 1 1321 507 318 69 73 chr11 96509867 96510155 -25333701 - ORR1E LTR MaLR 0 359 73 1 1321 23 78 0 0 chr11 96510548 96510599 -25333257 + AT_rich Low_complexity Low_complexity 1 51 0 2 1321 485 314 78 5 chr11 96510764 96510956 -25332900 - Charlie18a DNA MER1_type -96 246 41 2 1321 261 235 176 0 chr11 96511003 96511071 -25332785 - PB1D10 SINE Alu -5 112 33 2 1321 226 307 148 33 chr11 96511099 96511281 -25332575 + MIRb SINE MIR 22 224 -44 2 1321 672 13 0 0 chr11 96511389 96511466 -25332390 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1321 712 221 19 95 chr11 96511919 96512129 -25331727 - B3A SINE B2 -3 195 2 2 1321 181 240 100 0 chr11 96512135 96512185 -25331671 + L2c LINE L2 3289 3343 -44 2 1321 572 278 16 22 chr11 96512292 96512476 -25331380 + B3A SINE B2 4 186 -12 2 1321 196 268 18 0 chr11 96513409 96513465 -25330391 + L2c LINE L2 3098 3154 -233 2 1321 803 262 24 14 chr11 96513600 96513809 -25330047 - B3 SINE B2 -4 212 2 2 1321 22 35 0 0 chr11 96513922 96513951 -25329905 + AT_rich Low_complexity Low_complexity 1 29 0 3 1321 2592 30 0 0 chr11 96513951 96514249 -25329607 + L1Md_A LINE L1 6281 6578 -4 3 1321 1458 39 0 47 chr11 96514249 96514439 -25329417 - B2_Mm2 SINE B2 -14 181 1 3 1321 611 218 18 0 chr11 96514439 96514549 -25329307 - RSINE1 SINE B4 -46 119 8 3 1321 193 260 0 36 chr11 96514885 96514953 -25328903 + L2c LINE L2 3290 3406 -20 2 1321 1307 181 0 18 chr11 96515016 96515235 -25328621 + B3 SINE B2 2 216 0 3 1321 23 0 0 0 chr11 96516158 96516181 -25327675 + AT_rich Low_complexity Low_complexity 1 23 0 3 1321 618 238 0 23 chr11 96516184 96516313 -25327543 - ID_B1 SINE B4 -6 218 93 3 1321 679 229 85 90 chr11 96516351 96516562 -25327294 - B3 SINE B2 -6 210 1 3 1321 196 318 32 0 chr11 96518395 96518458 -25325398 + MIRc SINE MIR 183 247 -21 3 1321 336 94 0 0 chr11 96518498 96518551 -25325305 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1321 581 219 39 0 chr11 96518553 96518681 -25325175 - B3A SINE B2 -65 133 1 4 1321 1157 148 113 5 chr11 96518915 96519119 -25324737 + URR1A DNA MER1_type 1 226 0 4 1321 350 328 148 61 chr11 96519271 96519648 -25324208 - LFSINE_Vert SINE SINE -3 456 47 4 1321 942 137 0 0 chr11 96520170 96520428 -25323428 + (CA)n Simple_repeat Simple_repeat 1 258 0 4 1321 507 263 63 38 chr11 96520508 96520666 -25323190 + MIR SINE MIR 71 232 -30 4 1321 455 167 0 11 chr11 96521023 96521098 -25322758 + CT-rich Low_complexity Low_complexity 16 90 0 4 1321 315 0 0 0 chr11 96521098 96521133 -25322723 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1321 455 167 0 11 chr11 96521133 96521148 -25322708 + polypyrimidine Low_complexity Low_complexity 1 15 0 4 1321 271 320 61 98 chr11 96521357 96521404 -25322452 - MIR SINE MIR -5 257 218 4 1321 682 187 36 36 chr11 96521404 96521543 -25322313 - B1F SINE Alu -8 141 3 4 1321 271 320 61 98 chr11 96521543 96521741 -25322115 - MIR SINE MIR -45 217 21 4 1321 559 312 25 18 chr11 96521889 96522052 -25321804 - B4A SINE B4 -17 275 112 5 1321 652 206 9 0 chr11 96522081 96522188 -25321668 - PB1D10 SINE Alu -9 108 1 5 1321 273 222 15 31 chr11 96524423 96524488 -25319368 - L2c LINE L2 0 3387 3324 5 1321 200 225 0 145 chr11 96524441 96524493 -25319363 - MIRb SINE MIR -14 254 209 5 1321 597 14 0 0 chr11 96524493 96524563 -25319293 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1321 200 225 0 145 chr11 96524563 96524593 -25319263 - MIRb SINE MIR -60 208 184 5 1321 348 202 181 9 chr11 96524758 96524863 -25318993 - PB1D9 SINE Alu -1 126 4 5 1321 425 249 42 32 chr11 96525210 96525336 -25318520 + PB1 SINE Alu 1 121 -6 5 1321 520 168 74 9 chr11 96525346 96525454 -25318402 + B3 SINE B2 1 115 -101 5 1321 347 247 30 30 chr11 96525398 96525498 -25318358 + PB1D7 SINE Alu 21 120 0 5 1321 285 369 9 26 chr11 96525674 96525788 -25318068 + PB1D10 SINE Alu 1 112 -5 5 1321 959 126 230 0 chr11 96525795 96525969 -25317887 + B3 SINE B2 3 216 0 6 1321 504 241 28 0 chr11 96527219 96527327 -25316529 + PB1D10 SINE Alu 2 112 -5 6 1321 275 279 80 75 chr11 96527501 96527543 -25316313 - YREP_Mm Unknown Unknown -1468 344 246 6 1321 583 264 88 0 chr11 96527543 96527668 -25316188 + ID_B1 SINE B4 87 222 -2 6 1321 275 279 80 75 chr11 96527668 96527714 -25316142 - YREP_Mm Unknown Unknown -1468 245 131 6 1321 27 81 0 0 chr11 96527714 96527776 -25316080 + AT_rich Low_complexity Low_complexity 1 62 0 6 1321 457 211 16 35 chr11 96527791 96527894 -25315962 + B1_Mur1 SINE Alu 2 141 -8 6 1321 327 230 139 10 chr11 96527882 96527983 -25315873 - B4A SINE B4 -46 246 133 6 1321 322 250 0 59 chr11 96528010 96528095 -25315761 - ID2 SINE ID -2 81 2 6 1321 293 143 159 0 chr11 96528114 96528177 -25315679 - B3 SINE B2 -7 209 137 6 1321 605 307 98 19 chr11 96528239 96528344 -25315512 - B4A SINE B4 -5 287 183 6 1321 540 81 0 0 chr11 96528344 96528418 -25315438 + (GTCTG)n Simple_repeat Simple_repeat 5 78 0 7 1321 605 307 98 19 chr11 96528418 96528578 -25315278 - B4A SINE B4 -110 182 2 6 1321 330 219 185 0 chr11 96528580 96528699 -25315157 - B1F1 SINE Alu -7 142 2 7 1321 189 0 0 0 chr11 96528943 96528964 -25314892 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1321 325 256 99 33 chr11 96529570 96529776 -25314080 - L1M5 LINE L1 -514 5659 5435 7 1321 495 0 0 0 chr11 96530624 96530679 -25313177 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 7 1321 450 314 70 98 chr11 96531352 96531638 -25312218 + B4A SINE B4 2 279 -13 7 1321 245 250 0 0 chr11 96531671 96531723 -25312133 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1321 339 25 0 0 chr11 96531766 96531806 -25312050 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1321 360 0 0 0 chr11 96533041 96533081 -25310775 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1321 783 230 43 34 chr11 96533081 96533288 -25310568 - B3 SINE B2 -6 210 2 7 1321 540 0 0 0 chr11 96533679 96533739 -25310117 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1321 402 203 95 0 chr11 96533740 96533814 -25310042 - PB1D10 SINE Alu -15 102 22 8 1321 1011 99 7 27 chr11 96533875 96534021 -25309835 + B1_Mur3 SINE Alu 2 144 -5 8 1321 280 188 16 0 chr11 96534093 96534157 -25309699 + L1MA8 LINE L1 6222 6286 -5 8 1321 1031 184 53 0 chr11 96534190 96534380 -25309476 + B3 SINE B2 5 204 -12 8 1321 306 270 132 26 chr11 96534507 96534621 -25309235 - 7SLRNA srpRNA srpRNA -181 133 8 8 1321 934 222 11 0 chr11 96534525 96534705 -25309151 - ID_B1 SINE B4 -38 186 5 8 1321 197 197 0 16 chr11 96535442 96535504 -25308352 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1321 247 311 0 0 chr11 96537144 96537218 -25306638 - tRNA-Ile-ATT tRNA tRNA -3 74 1 8 1321 639 214 13 0 chr11 96537330 96537465 -25306391 + B1F SINE Alu 3 142 -8 8 1321 484 291 35 7 chr11 96537581 96537723 -25306133 - ID_B1 SINE B4 0 224 79 8 1321 397 300 120 111 chr11 96538380 96538605 -25305251 + MLT1J LTR MaLR 111 337 -175 9 1321 871 240 29 5 chr11 96538632 96538837 -25305019 + B3 SINE B2 1 210 -6 9 1321 249 57 0 0 chr11 96540336 96540371 -25303485 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1321 1232 155 14 18 chr11 96540384 96540601 -25303255 + B3 SINE B2 1 216 0 9 1321 210 74 0 0 chr11 96540733 96540760 -25303096 + PB1D9 SINE Alu 86 112 -8 9 1321 883 234 25 88 chr11 96540774 96541013 -25302843 + B4A SINE B4 1 224 -68 9 1321 2175 163 46 55 chr11 96541052 96541092 -25302764 + MTC LTR MaLR 1 40 -381 9 1321 1085 118 171 0 chr11 96541092 96541279 -25302577 + URR1A DNA MER1_type 5 223 -3 9 1321 2175 163 46 55 chr11 96541279 96541653 -25302203 + MTC LTR MaLR 41 411 -10 9 1321 593 265 0 41 chr11 96543588 96543757 -25300099 - RSINE1 SINE B4 -1 164 3 9 1321 1047 180 67 0 chr11 96543791 96543969 -25299887 - B3 SINE B2 -25 191 2 9 1321 234 0 0 0 chr11 96543985 96544011 -25299845 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1321 355 326 73 73 chr11 96544062 96544294 -25299562 - HAL1 LINE L1 -105 2402 2171 1 1321 839 163 0 13 chr11 96544319 96544468 -25299388 - B1_Mm SINE Alu 0 147 1 1 1321 228 148 32 16 chr11 96544469 96544531 -25299325 - HAL1 LINE L1 -326 2181 2119 1 1321 860 94 21 23 chr11 96544562 96544703 -25299153 + B1_Mur2 SINE Alu 30 307 -4 1 1321 236 190 93 81 chr11 96544846 96544932 -25298924 - HAL1 LINE L1 -545 1962 1876 1 1321 195 42 0 0 chr11 96545357 96545381 -25298475 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1321 535 336 60 88 chr11 96545391 96545789 -25298067 - HAL1 LINE L1 -1304 1203 817 1 1321 235 296 65 84 chr11 96546187 96546342 -25297514 + MIR3 SINE MIR 30 181 -27 1 1321 754 173 205 0 chr11 96546780 96546936 -25296920 + B3A SINE B2 1 188 -10 1 1321 370 311 0 9 chr11 96547027 96547134 -25296722 - PB1D10 SINE Alu -7 110 5 1 1321 306 0 0 0 chr11 96547657 96547691 -25296165 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1321 345 47 0 0 chr11 96548545 96548588 -25295268 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 1 1321 822 187 203 0 chr11 96548642 96548829 -25295027 + URR1B DNA MER1_type 1 225 0 1 1321 402 284 42 108 chr11 96550013 96550055 -25293801 + B3A SINE B2 1 35 -163 1 1321 6522 43 0 0 chr11 96550055 96550822 -25293034 + L1Md_F2 LINE L1 5804 6570 -12 1 1321 402 284 42 108 chr11 96550822 96550945 -25292911 + B3A SINE B2 36 155 -43 1 1321 180 125 0 0 chr11 96550947 96550979 -25292877 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1321 776 111 43 0 chr11 96551040 96551157 -25292699 + B1_Mus1 SINE Alu 24 145 -3 1 1321 384 282 43 0 chr11 96551641 96551758 -25292098 - RMER19A LTR ERVK -574 163 42 1 1321 251 250 58 14 chr11 96552644 96552713 -25291143 + PB1D10 SINE Alu 12 83 -34 1 1321 311 242 0 15 chr11 96552860 96552927 -25290929 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 1 1321 922 162 0 0 chr11 96553018 96553160 -25290696 + B1_Mur3 SINE Alu 1 142 -7 1 1321 335 192 0 0 chr11 96553497 96553570 -25290286 - RLTR10D LTR ERVK -286 73 1 1 1321 447 316 46 55 chr11 96553591 96553829 -25290027 - ORR1E LTR MaLR -94 265 30 1 1321 1163 90 90 6 chr11 96554319 96554497 -25289359 + B2_Mm2 SINE B2 2 194 -1 1 1321 1977 153 74 22 chr11 96554756 96555123 -25288733 + ORR1B1 LTR MaLR 1 386 -8 1 1321 675 292 87 41 chr11 96555540 96555736 -25288120 + B3 SINE B2 1 205 -11 1 1321 198 0 0 0 chr11 96556795 96556817 -25287039 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1321 24 0 0 0 chr11 96558039 96558063 -25285793 + AT_rich Low_complexity Low_complexity 1 24 0 1 1321 301 260 0 72 chr11 96558600 96558683 -25285173 + L1MDa LINE L1 2431 2507 -4126 1 1321 372 162 44 0 chr11 96558683 96558762 -25285094 + B1F1 SINE Alu 63 148 -1 1 1321 639 272 42 30 chr11 96558928 96559097 -25284759 - B3A SINE B2 -15 201 31 1 1321 212 246 231 0 chr11 96559047 96559112 -25284744 - B4 SINE B4 -212 80 1 1 1321 405 58 0 0 chr11 96559118 96559170 -25284686 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1321 537 230 93 22 chr11 96559182 96559364 -25284492 - B2_Mm2 SINE B2 0 195 1 1 1321 358 299 132 11 chr11 96559367 96559556 -25284300 - B3 SINE B2 -3 213 2 1 1321 261 258 0 70 chr11 96559641 96559712 -25284144 - ID4_ SINE ID -2 81 16 1 1321 21 0 0 0 chr11 96559726 96559747 -25284109 + AT_rich Low_complexity Low_complexity 1 21 0 1 1321 415 277 24 56 chr11 96559979 96560105 -25283751 - B3A SINE B2 -10 188 67 1 1321 180 0 0 0 chr11 96560125 96560145 -25283711 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1 1321 738 176 22 14 chr11 96560253 96560391 -25283465 - B1_Mur1 SINE Alu 0 149 11 1 1321 22 56 0 0 chr11 96560399 96560435 -25283421 + AT_rich Low_complexity Low_complexity 1 36 0 1 1321 915 137 14 7 chr11 96560474 96560621 -25283235 - B1_Mur4 SINE Alu 0 150 3 1 1321 3703 209 104 70 chr11 96560630 96561216 -25282640 - Lx9 LINE L1 -5 7639 7029 1 1321 2533 164 52 31 chr11 96561216 96561732 -25282124 - RLTR11A2 LTR ERVK 0 527 1 1 1321 3703 209 104 70 chr11 96561732 96561870 -25281986 - Lx9 LINE L1 -616 7028 6863 1 1321 248 196 69 35 chr11 96561870 96561928 -25281928 + LTR86A2 LTR ERVL 82 141 -367 1 1321 3703 209 104 70 chr11 96561928 96562109 -25281747 - Lx9 LINE L1 -616 6862 6643 1 1321 341 276 0 7 chr11 96562404 96562539 -25281317 + (CA)n Simple_repeat Simple_repeat 2 135 0 1 1321 220 377 0 0 chr11 96562708 96562769 -25281087 + B4A SINE B4 85 145 -147 1 1321 260 324 40 0 chr11 96562720 96562794 -25281062 + B1F SINE Alu 12 88 -61 1 1321 956 259 52 26 chr11 96563162 96563431 -25280425 + B4A SINE B4 15 290 -2 1 1321 233 119 24 0 chr11 96564043 96564085 -25279771 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 1 1321 361 177 0 8 chr11 96564256 96564326 -25279530 + B1_Mur4 SINE Alu 3 69 -81 1 1321 345 47 0 0 chr11 96564326 96564369 -25279487 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 1 1321 808 163 0 8 chr11 96564413 96564543 -25279313 + B1_Mus1 SINE Alu 20 148 0 1 1321 221 83 0 27 chr11 96564543 96564580 -25279276 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 1 1321 213 323 44 73 chr11 96564912 96565049 -25278807 + B4 SINE B4 64 196 -96 1 1321 430 248 0 56 chr11 96564958 96565065 -25278791 + PB1D7 SINE Alu 19 119 -1 1 1321 457 309 20 54 chr11 96565769 96565891 -25277965 + B4A SINE B4 3 124 -168 1 1321 1483 33 0 57 chr11 96565891 96566083 -25277773 + B2_Mm2 SINE B2 1 181 -14 1 1321 457 309 20 54 chr11 96566083 96566107 -25277749 + B4A SINE B4 125 144 -148 1 1321 231 328 16 0 chr11 96566205 96566266 -25277590 + RSINE1 SINE B4 85 146 -19 1 1321 604 212 0 26 chr11 96566408 96566524 -25277332 + PB1D10 SINE Alu 2 114 -3 1 1321 296 295 0 0 chr11 96566524 96566585 -25277271 + ID4 SINE ID 17 77 -6 1 1321 2356 124 18 40 chr11 96566999 96567394 -25276462 - ORR1B1 LTR MaLR -8 386 1 1 1321 1055 199 18 45 chr11 96567890 96568111 -25275745 + ID_B1 SINE B4 2 216 -8 1 1321 207 100 0 0 chr11 96568113 96568143 -25275713 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 1321 761 265 116 0 chr11 96568246 96568435 -25275421 + B3 SINE B2 1 211 -5 1 1321 247 230 12 36 chr11 96568805 96568972 -25274884 + CT-rich Low_complexity Low_complexity 2 164 0 1 1321 27 0 0 0 chr11 96570435 96570462 -25273394 + AT_rich Low_complexity Low_complexity 1 27 0 1 1321 357 24 0 0 chr11 96570836 96570878 -25272978 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1321 1287 66 0 103 chr11 96571418 96571597 -25272259 + B2_Mm2 SINE B2 14 174 -21 1 1321 1159 62 14 0 chr11 96571597 96571742 -25272114 - B1_Mm SINE Alu 0 147 1 1 1321 1287 66 0 103 chr11 96571742 96571765 -25272091 + B2_Mm2 SINE B2 175 195 0 1 1321 207 0 0 0 chr11 96573556 96573579 -25270277 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 1 1321 255 170 0 0 chr11 96574356 96574403 -25269453 + GA-rich Low_complexity Low_complexity 2 48 0 1 1321 234 0 0 0 chr11 96575646 96575672 -25268184 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1 1321 1680 31 0 0 chr11 96576426 96576617 -25267239 + B2_Mm1a SINE B2 1 191 -2 1 1321 216 0 0 0 chr11 96576619 96576643 -25267213 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1321 255 337 85 40 chr11 96577161 96577337 -25266519 + MIRb SINE MIR 74 257 -11 1 1321 21 0 0 0 chr11 96577534 96577555 -25266301 + AT_rich Low_complexity Low_complexity 1 21 0 1 1321 914 175 22 39 chr11 96578021 96578199 -25265657 + B2_Mm2 SINE B2 2 176 -19 1 1321 1021 115 41 67 chr11 96578217 96578412 -25265444 + B2_Mm2 SINE B2 1 190 -5 1 1321 886 187 62 28 chr11 96578570 96578746 -25265110 + B3A SINE B2 1 182 -16 1 1321 219 36 0 0 chr11 96579272 96579300 -25264556 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 1 1321 322 279 228 8 chr11 96580551 96580674 -25263182 + RSINE1 SINE B4 4 153 -12 1 1321 263 28 28 0 chr11 96580679 96580715 -25263141 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1321 934 198 112 0 chr11 96582228 96582415 -25261441 + B3 SINE B2 2 209 -7 1 1321 1211 55 0 14 chr11 96582442 96582590 -25261266 - B1_Mus2 SINE Alu 0 147 2 1 1321 391 219 132 9 chr11 96582786 96582892 -25260964 - PB1D9 SINE Alu -1 119 1 1 1321 213 65 0 0 chr11 96583170 96583201 -25260655 + (ACTG)n Simple_repeat Simple_repeat 1 31 0 1 1321 182 283 41 81 chr11 96583477 96583600 -25260256 - L2a LINE L2 -46 3380 3263 1 1321 405 0 0 0 chr11 96583728 96583773 -25260083 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1321 1149 81 0 0 chr11 96583893 96584041 -25259815 + B1_Mus1 SINE Alu 1 148 0 1 1321 616 96 0 62 chr11 96584045 96584190 -25259666 + GA-rich Low_complexity Low_complexity 2 137 0 1 1321 588 239 0 0 chr11 96584431 96584540 -25259316 + PB1D10 SINE Alu 1 109 -8 1 1321 326 277 25 119 chr11 96585594 96585914 -25257942 - B4 SINE B4 -1 291 2 1 1321 467 154 8 0 chr11 96587505 96587622 -25256234 + CT-rich Low_complexity Low_complexity 2 119 0 1 1321 317 231 48 0 chr11 96587625 96587729 -25256127 + (TCTCTG)n Simple_repeat Simple_repeat 2 110 0 1 1321 234 128 0 0 chr11 96587736 96587775 -25256081 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1321 185 137 39 0 chr11 96587778 96587829 -25256027 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 1 1321 25 0 0 0 chr11 96588584 96588609 -25255247 + GC_rich Low_complexity Low_complexity 1 25 0 1 1321 279 308 157 16 chr11 96589653 96589838 -25254018 + L2c LINE L2 3139 3349 -38 1 1321 194 0 39 0 chr11 96590197 96590223 -25253633 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1321 591 252 8 16 chr11 96590237 96590366 -25253490 - B1F SINE Alu -21 128 1 1 1321 401 215 20 0 chr11 96591342 96591422 -25252434 - PB1D10 SINE Alu -7 120 29 2 1321 256 231 29 44 chr11 96591364 96591432 -25252424 - 4.5SRNA scRNA scRNA -7 87 21 2 1321 349 350 76 14 chr11 96592991 96593136 -25250720 + MamSINE1 SINE tRNA 12 165 -125 2 1321 330 305 125 10 chr11 96593491 96593543 -25250313 + L1MCa LINE L1 1101 1155 -5353 2 1321 793 184 27 0 chr11 96593543 96593690 -25250166 + RSINE1 SINE B4 2 152 -13 2 1321 330 305 125 10 chr11 96593690 96593829 -25250027 + L1MCa LINE L1 1156 1313 -5195 2 1321 242 178 44 0 chr11 96595138 96595183 -25248673 + MIR SINE MIR 106 152 -56 2 1321 345 257 0 39 chr11 96595377 96595454 -25248402 - ID4 SINE ID -8 75 2 2 1321 621 171 0 26 chr11 96595489 96595603 -25248253 + B1_Mus1 SINE Alu 38 148 0 2 1321 402 97 18 80 chr11 96595603 96595715 -25248141 + A-rich Low_complexity Low_complexity 2 106 0 2 1321 219 69 0 0 chr11 96595840 96595869 -25247987 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 2 1321 962 192 106 5 chr11 96595869 96596057 -25247799 - B3 SINE B2 -8 208 2 2 1321 249 33 0 0 chr11 96596063 96596093 -25247763 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1321 318 87 0 0 chr11 96596100 96596146 -25247710 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1321 396 0 0 0 chr11 96596152 96596196 -25247660 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2 1321 1216 61 0 0 chr11 96596284 96596431 -25247425 + B1_Mus2 SINE Alu 1 147 0 2 1321 274 250 110 40 chr11 96596446 96596546 -25247310 + MIR SINE MIR 97 203 -59 2 1321 665 240 6 13 chr11 96596674 96596830 -25247026 + RSINE1 SINE B4 3 157 -8 2 1321 348 24 0 0 chr11 96596885 96596926 -25246930 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1321 641 167 44 36 chr11 96598267 96598404 -25245452 + B1_Mur1 SINE Alu 5 142 -7 2 1321 216 0 0 0 chr11 96599084 96599108 -25244748 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1321 588 29 0 0 chr11 96599973 96600043 -25243813 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1322 24 0 0 0 chr11 96601175 96601199 -25242657 + AT_rich Low_complexity Low_complexity 1 24 0 2 1322 279 0 0 0 chr11 96601208 96601239 -25242617 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1322 717 0 21 11 chr11 96601985 96602079 -25241777 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 1322 210 143 0 0 chr11 96604228 96604263 -25239593 + (TTC)n Simple_repeat Simple_repeat 2 36 0 2 1322 181 256 0 0 chr11 96604263 96604302 -25239554 + L3 LINE CR1 3094 3132 -1357 2 1322 447 19 0 0 chr11 96605135 96605187 -25238669 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1322 432 0 0 0 chr11 96605701 96605749 -25238107 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1322 234 312 42 139 chr11 96606669 96606885 -25236971 - MTD LTR MaLR -85 334 140 2 1322 807 112 0 0 chr11 96607514 96607630 -25236226 + B1_Mus1 SINE Alu 23 138 -10 2 1322 197 0 71 0 chr11 96607630 96607658 -25236198 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1322 193 294 72 14 chr11 96607991 96608060 -25235796 - MIRb SINE MIR -176 92 20 2 1322 703 151 119 0 chr11 96609555 96609681 -25234175 - B1_Mur3 SINE Alu -8 141 1 2 1322 246 162 162 0 chr11 96609717 96609791 -25234065 - PB1D7 SINE Alu -10 110 25 2 1322 498 312 14 14 chr11 96609757 96609900 -25233956 - B4A SINE B4 -149 143 1 2 1322 590 222 17 17 chr11 96610007 96610126 -25233730 - PB1D7 SINE Alu -1 119 1 2 1322 812 194 0 54 chr11 96610155 96610302 -25233554 + B3A SINE B2 1 139 -59 2 1322 659 100 9 0 chr11 96610310 96610420 -25233436 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 2 1322 220 200 16 127 chr11 96610461 96610524 -25233332 + B1F SINE Alu 92 147 -2 2 1322 276 322 16 33 chr11 96610841 96610963 -25232893 + MTA_Mm LTR MaLR 1 120 -299 2 1322 1153 198 19 5 chr11 96610970 96611178 -25232678 - B3 SINE B2 -4 212 2 2 1322 394 249 302 19 chr11 96611180 96611385 -25232471 + MTA_Mm LTR MaLR 133 395 -1 2 1322 1139 236 69 56 chr11 96611337 96611656 -25232200 - ORR1C2 LTR MaLR 0 384 62 2 1322 325 136 33 17 chr11 96611652 96611712 -25232144 + MTE2a LTR MaLR 319 379 0 2 1322 436 200 120 0 chr11 96611719 96611819 -25232037 + PB1D10 SINE Alu 1 112 -5 2 1322 2184 198 82 77 chr11 96612212 96612785 -25231071 + RMER1C Other Other 767 1342 0 2 1322 647 194 71 7 chr11 96612790 96612930 -25230926 + B1_Mur3 SINE Alu 1 149 0 2 1322 241 344 133 32 chr11 96613004 96613289 -25230567 - L2 LINE L2 -622 2797 2484 2 1322 232 281 24 35 chr11 96613294 96613379 -25230477 + (CTGGGG)n Simple_repeat Simple_repeat 5 88 0 2 1322 1172 81 0 0 chr11 96613440 96613588 -25230268 - B1_Mus1 SINE Alu 0 148 1 2 1322 654 231 58 42 chr11 96614201 96614391 -25229465 + B3A SINE B2 5 197 -1 2 1322 29 0 0 0 chr11 96614403 96614432 -25229424 + AT_rich Low_complexity Low_complexity 1 29 0 2 1322 472 206 0 7 chr11 96614432 96614542 -25229314 + B1F2 SINE Alu 42 149 0 2 1322 426 317 0 0 chr11 96614575 96614676 -25229180 + PB1D10 SINE Alu 13 113 -4 2 1322 892 123 110 6 chr11 96614689 96614852 -25229004 + B2_Mm2 SINE B2 1 180 -15 2 1322 198 0 0 0 chr11 96614852 96614874 -25228982 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1322 391 217 14 0 chr11 96614893 96614962 -25228894 + B3A SINE B2 27 96 -102 2 1322 459 0 0 0 chr11 96614973 96615024 -25228832 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1322 423 199 188 87 chr11 96615571 96615709 -25228147 + B4 SINE B4 70 221 -71 2 1322 903 53 0 0 chr11 96615600 96615714 -25228142 + B1_Mus1 SINE Alu 35 148 0 2 1322 214 178 0 0 chr11 96615714 96615759 -25228097 + A-rich Low_complexity Low_complexity 1 45 0 2 1322 863 182 0 0 chr11 96615853 96615990 -25227866 + B1_Mus1 SINE Alu 1 137 -11 2 1322 903 202 34 29 chr11 96616029 96616233 -25227623 + ID_B1 SINE B4 2 206 -18 2 1322 261 352 91 18 chr11 96616284 96616394 -25227462 - MLT1J LTR MaLR -4 508 391 2 1322 402 247 0 0 chr11 96616531 96616608 -25227248 + B3A SINE B2 1 77 -121 2 1322 1058 182 73 0 chr11 96616693 96616885 -25226971 + B3 SINE B2 2 207 -9 2 1322 1208 55 0 0 chr11 96616903 96617049 -25226807 - B1_Mus2 SINE Alu 0 147 2 2 1322 301 284 0 13 chr11 96617064 96617139 -25226717 + B4A SINE B4 219 292 0 2 1322 404 108 23 14 chr11 96617255 96617331 -25226525 + PB1D10 SINE Alu 21 102 -18 2 1322 1214 61 0 0 chr11 96617381 96617528 -25226328 + B1_Mus1 SINE Alu 2 148 0 2 1322 246 74 36 18 chr11 96617572 96617627 -25226229 + (TTTTTG)n Simple_repeat Simple_repeat 4 59 0 2 1322 441 36 0 0 chr11 96617637 96617692 -25226164 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1322 240 354 129 8 chr11 96618238 96618494 -25225362 + L1MC LINE L1 5607 5893 -1989 2 1322 404 242 113 32 chr11 96618552 96618676 -25225180 + B1F SINE Alu 13 146 -3 2 1322 889 214 38 16 chr11 96618840 96619025 -25224831 - B3A SINE B2 -5 193 5 2 1322 234 0 0 0 chr11 96619046 96619072 -25224784 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1322 615 256 0 15 chr11 96619125 96619256 -25224600 - ID_B1 SINE B4 -2 222 94 2 1322 725 210 26 46 chr11 96619256 96619410 -25224446 + B2_Mm2 SINE B2 2 150 -45 2 1322 1522 58 16 0 chr11 96619410 96619599 -25224257 + B2_Mm2 SINE B2 2 193 -2 2 1322 1240 21 7 7 chr11 96619599 96619744 -25224112 + B1_Mus2 SINE Alu 1 146 -1 2 1322 725 210 26 46 chr11 96619744 96619783 -25224073 + B2_Mm2 SINE B2 151 191 -4 2 1322 384 297 20 0 chr11 96619780 96619881 -25223975 - ID_B1 SINE B4 -119 105 3 2 1322 203 231 0 55 chr11 96619993 96620048 -25223808 - L3 LINE CR1 -200 4289 4238 2 1322 574 221 214 0 chr11 96620297 96620428 -25223428 + RSINE1 SINE B4 3 161 -4 2 1322 240 286 0 0 chr11 96621057 96621113 -25222743 + MIR SINE MIR 207 262 0 2 1322 1190 55 0 7 chr11 96621878 96622026 -25221830 + B1_Mus2 SINE Alu 1 147 0 2 1322 342 307 54 23 chr11 96622253 96622383 -25221473 + B1F1 SINE Alu 1 134 -15 2 1322 298 230 193 36 chr11 96622962 96623102 -25220754 + YREP_Mm Unknown Unknown 133 294 -1518 2 1322 442 307 43 0 chr11 96622981 96623001 -25220855 - B1F SINE Alu 0 149 4 2 1322 581 214 25 25 chr11 96623001 96623121 -25220735 - ID_B1 SINE B4 -20 204 85 2 1322 341 236 66 11 chr11 96623951 96624052 -25219804 - PB1D7 SINE Alu -8 112 6 2 1322 356 269 47 19 chr11 96624061 96624167 -25219689 - PB1D10 SINE Alu -8 109 1 2 1322 243 189 0 0 chr11 96624167 96624204 -25219652 - MER94 DNA AcHobo -24 110 74 2 1322 1615 27 27 0 chr11 96624883 96625071 -25218785 - B2_Mm1a SINE B2 0 193 1 2 1322 558 264 129 5 chr11 96625111 96625305 -25218551 - ID_B1 SINE B4 0 224 7 2 1322 536 280 28 7 chr11 96625305 96625449 -25218407 - B1F SINE Alu -1 148 2 2 1322 182 83 56 0 chr11 96625821 96625857 -25217999 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 2 1322 198 0 0 0 chr11 96626958 96626980 -25216876 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 2 1322 682 203 0 0 chr11 96627517 96627635 -25216221 - B1F1 SINE Alu -26 123 6 2 1322 231 253 76 0 chr11 96630669 96630748 -25213108 + L1MB7 LINE L1 5757 5841 -333 2 1322 579 245 38 31 chr11 96630748 96630908 -25212948 + RSINE1 SINE B4 2 162 -3 2 1322 1121 63 28 0 chr11 96630948 96631090 -25212766 + B1_Mus2 SINE Alu 1 146 -1 2 1322 984 138 14 7 chr11 96631125 96631271 -25212585 + B1_Mur4 SINE Alu 4 150 0 2 1322 338 206 144 2 chr11 96631275 96631379 -25212477 + L1MB7 LINE L1 5860 5986 -198 2 1322 303 272 86 69 chr11 96631537 96631548 -25212308 + MT2B LTR ERVL 163 210 -391 2 1322 559 151 51 138 chr11 96631548 96631686 -25212170 + B1_Mur2 SINE Alu 10 135 -14 3 1322 303 272 86 69 chr11 96631686 96631711 -25212145 + MT2B LTR ERVL 211 339 -262 2 1322 213 121 0 0 chr11 96631711 96631744 -25212112 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 3 1322 208 321 179 16 chr11 96632560 96632750 -25211106 - MIR SINE MIR -6 256 36 3 1322 763 225 36 52 chr11 96632862 96633054 -25210802 - B3A SINE B2 -9 189 1 3 1322 275 302 37 28 chr11 96633063 96633172 -25210684 - PB1D9 SINE Alu -7 113 4 3 1322 567 263 126 16 chr11 96633289 96633536 -25210320 - B4A SINE B4 -15 277 4 3 1322 264 281 102 34 chr11 96633597 96633715 -25210141 + PB1 SINE Alu 1 126 -1 3 1322 271 314 82 8 chr11 96634616 96634738 -25209118 - B1F2 SINE Alu -18 131 1 3 1322 294 239 154 9 chr11 96634804 96634914 -25208942 - L2b LINE L2 -3 3372 3247 3 1322 254 262 0 16 chr11 96634915 96634977 -25208879 + PB1D10 SINE Alu 37 97 -20 3 1322 332 43 22 0 chr11 96634977 96635023 -25208833 + (CAAT)n Simple_repeat Simple_repeat 4 50 0 3 1322 612 214 39 8 chr11 96635034 96635161 -25208695 + B1F2 SINE Alu 13 143 -6 3 1322 314 125 50 0 chr11 96635285 96635365 -25208491 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 1322 941 67 0 0 chr11 96635574 96635694 -25208162 - B1_Mus1 SINE Alu -26 122 3 3 1322 180 0 0 0 chr11 96637389 96637409 -25206447 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1322 1428 83 0 15 chr11 96639445 96639640 -25204216 + B2_Mm1a SINE B2 2 193 0 3 1322 1592 43 0 11 chr11 96639797 96639986 -25203870 + B2_Mm1a SINE B2 2 188 -5 3 1322 515 237 101 34 chr11 96639995 96640175 -25203681 + ID_B1 SINE B4 100 288 -4 3 1322 773 262 34 5 chr11 96640228 96640435 -25203421 - B3 SINE B2 -2 214 2 3 1322 638 263 157 57 chr11 96640598 96640712 -25203144 - Charlie1 DNA MER1_type -6 2775 2649 3 1322 403 223 239 6 chr11 96640712 96640879 -25202977 + B3 SINE B2 1 206 -10 3 1322 638 263 157 57 chr11 96640879 96640928 -25202928 - Charlie1 DNA MER1_type -133 2648 2607 3 1322 1075 122 54 27 chr11 96640928 96641114 -25202742 + B2_Mm1t SINE B2 1 191 -2 3 1322 638 263 157 57 chr11 96641114 96641389 -25202467 - Charlie1 DNA MER1_type -175 2606 2293 3 1322 329 253 16 13 chr11 96641421 96641510 -25202346 - B1_Mur1 SINE Alu -8 141 56 3 1322 544 232 75 127 chr11 96641629 96641683 -25202173 - B3A SINE B2 -21 177 133 3 1322 2592 114 50 23 chr11 96641683 96642122 -25201734 + RLTR11B LTR ERVK 3 453 0 3 1322 544 232 75 127 chr11 96642122 96642210 -25201646 - B3A SINE B2 -66 132 41 3 1322 1271 100 10 31 chr11 96642210 96642406 -25201450 - B2_Mm1t SINE B2 -1 192 1 3 1322 544 232 75 127 chr11 96642406 96642435 -25201421 - B3A SINE B2 -158 40 14 3 1322 997 31 132 0 chr11 96642480 96642609 -25201247 + B1_Mm SINE Alu 1 146 -1 3 1322 336 304 7 43 chr11 96642667 96642808 -25201048 + B1F SINE Alu 1 136 -13 3 1322 1083 119 11 28 chr11 96642820 96643001 -25200855 - B2_Mm2 SINE B2 -17 178 1 3 1322 578 255 97 39 chr11 96643022 96643177 -25200679 + RSINE1 SINE B4 2 165 0 3 1322 719 270 18 57 chr11 96643206 96643424 -25200432 - B3A SINE B2 -13 203 1 3 1322 324 0 0 0 chr11 96643424 96643460 -25200396 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 3 1322 296 202 259 37 chr11 96643468 96643576 -25200280 - Charlie1 DNA MER1_type -710 2071 1940 3 1322 258 348 107 54 chr11 96643627 96643653 -25200203 - ID_B1 SINE B4 -2 222 147 3 1322 357 340 10 10 chr11 96643653 96643751 -25200105 - PB1D10 SINE Alu -17 100 3 3 1322 258 348 107 54 chr11 96643751 96643776 -25200080 - ID_B1 SINE B4 -2 146 66 3 1322 600 142 92 0 chr11 96643963 96644076 -25199780 + B3 SINE B2 2 124 -69 3 1322 506 181 47 43 chr11 96644073 96644282 -25199574 - RMER4B LTR ERVK -9 576 335 3 1322 1284 51 0 0 chr11 96644281 96644438 -25199418 - B2_Mm2 SINE B2 -37 158 2 3 1322 614 49 0 12 chr11 96644450 96644533 -25199323 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 3 1322 229 241 190 0 chr11 96644615 96644673 -25199183 + PB1D10 SINE Alu 1 69 -48 3 1322 455 186 0 10 chr11 96644710 96644808 -25199048 + GA-rich Low_complexity Low_complexity 4 100 0 3 1322 305 275 19 143 chr11 96645028 96645109 -25198747 + B1F SINE Alu 1 61 -88 3 1322 1329 237 67 42 chr11 96645109 96645540 -25198316 - RMER10A LTR ERVL 0 442 1 3 1322 305 275 19 143 chr11 96645540 96645619 -25198237 + B1F SINE Alu 62 141 -8 3 1322 407 200 38 0 chr11 96645627 96645707 -25198149 + B1_Mur1 SINE Alu 30 112 -37 3 1322 813 95 0 0 chr11 96646128 96646244 -25197612 + (GGAA)n Simple_repeat Simple_repeat 4 119 0 3 1322 721 157 10 211 chr11 96646248 96646442 -25197414 + B3 SINE B2 36 216 0 3 1322 1129 49 27 20 chr11 96646442 96646589 -25197267 + B1_Mus1 SINE Alu 1 148 0 3 1322 266 50 25 0 chr11 96646595 96646635 -25197221 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 3 1322 437 148 318 0 chr11 96646636 96646724 -25197132 + PB1D9 SINE Alu 3 118 -2 3 1322 1596 37 21 0 chr11 96646728 96646916 -25196940 + B2_Mm1a SINE B2 2 193 0 3 1322 572 116 0 10 chr11 96646936 96647032 -25196824 + (GAAA)n Simple_repeat Simple_repeat 1 95 0 3 1322 625 197 16 8 chr11 96647141 96647264 -25196592 + B1_Mm SINE Alu 9 132 -15 3 1322 351 291 86 80 chr11 96647143 96647330 -25196526 + MT2B LTR ERVL 175 362 -239 3 1322 292 196 47 93 chr11 96647439 96647546 -25196310 - PB1D10 SINE Alu -2 115 14 3 1322 563 216 86 0 chr11 96647663 96647779 -25196077 - B1F2 SINE Alu -19 130 5 3 1322 1342 95 21 21 chr11 96647787 96647981 -25195875 - B2_Mm2 SINE B2 -1 194 1 3 1322 665 181 102 45 chr11 96648424 96648693 -25195163 + RMER10A LTR ERVL 3 315 -127 3 1322 244 171 0 0 chr11 96648882 96648923 -25194933 - PB1D7 SINE Alu -1 119 79 3 1322 198 0 0 0 chr11 96648941 96648963 -25194893 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1322 851 79 0 0 chr11 96648982 96649096 -25194760 - B1_Mus1 SINE Alu -1 147 34 3 1322 294 234 31 15 chr11 96649100 96649165 -25194691 - B1F SINE Alu -70 79 14 3 1322 858 72 160 0 chr11 96649281 96649406 -25194450 + B1_Mm SINE Alu 2 146 -1 3 1322 210 105 0 0 chr11 96649410 96649448 -25194408 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 1322 243 318 0 43 chr11 96649715 96649784 -25194072 + ID_B1 SINE B4 80 145 -79 3 1322 236 226 44 67 chr11 96649784 96649804 -25194052 - YREP_Mm Unknown Unknown -1487 324 238 3 1322 306 266 81 50 chr11 96650131 96650230 -25193626 + PB1D10 SINE Alu 15 116 -1 3 1322 25 31 0 0 chr11 96650774 96650806 -25193050 + GC_rich Low_complexity Low_complexity 1 32 0 3 1322 589 265 56 37 chr11 96651406 96651567 -25192289 + ID_B1 SINE B4 5 168 -56 3 1322 267 289 11 46 chr11 96651698 96651785 -25192071 + RSINE1 SINE B4 44 127 -38 3 1322 238 240 37 74 chr11 96652158 96652176 -25191680 + B1F1 SINE Alu 1 78 -71 3 1322 307 136 0 63 chr11 96652176 96652239 -25191617 + ID_B1 SINE B4 98 156 -68 3 1322 1270 102 23 0 chr11 96652390 96652566 -25191290 + B2_Mm2 SINE B2 2 181 -14 3 1322 286 190 0 17 chr11 96652598 96652657 -25191199 + B2_Mm2 SINE B2 47 104 -91 3 1322 189 0 0 0 chr11 96652678 96652699 -25191157 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 3 1322 1330 87 38 0 chr11 96652766 96652949 -25190907 - B2_Mm2 SINE B2 0 195 6 3 1322 1160 144 16 5 chr11 96652955 96653143 -25190713 - B2_Mm2 SINE B2 -1 194 5 3 1322 296 246 0 15 chr11 96653364 96653430 -25190426 - B1_Mm SINE Alu -21 126 62 3 1322 316 342 36 77 chr11 96653373 96653569 -25190287 - ID_B1 SINE B4 -26 198 11 3 1322 231 224 0 33 chr11 96653758 96653818 -25190038 + B1F SINE Alu 92 149 0 3 1322 297 235 0 0 chr11 96653833 96653884 -25189972 + RSINE1 SINE B4 11 61 -104 3 1322 288 0 0 0 chr11 96653886 96653918 -25189938 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 3 1322 1246 63 0 0 chr11 96653918 96654076 -25189780 - B2_Mm2 SINE B2 -36 159 2 3 1322 282 299 26 0 chr11 96654076 96654148 -25189708 + RSINE1 SINE B4 50 123 -42 3 1322 228 297 26 51 chr11 96654179 96654257 -25189599 + PB1D7 SINE Alu 41 116 -4 3 1322 180 0 0 0 chr11 96654599 96654619 -25189237 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1322 226 301 96 0 chr11 96654853 96654926 -25188930 + PB1D10 SINE Alu 3 82 -35 3 1322 289 333 92 8 chr11 96654939 96655069 -25188787 + B1F SINE Alu 1 141 -8 3 1322 1334 135 246 34 chr11 96655126 96655506 -25188350 + RMER6B LTR ERVK 1 461 0 3 1322 568 212 228 35 chr11 96655919 96656090 -25187766 - B3 SINE B2 -10 206 3 3 1322 223 214 125 0 chr11 96656154 96656210 -25187646 - PB1D7 SINE Alu -39 81 19 3 1322 1356 53 25 55 chr11 96656245 96656444 -25187412 - B2_Mm2 SINE B2 -1 194 2 3 1322 1582 38 5 0 chr11 96656454 96656640 -25187216 - B2_Mm1t SINE B2 -5 188 2 3 1322 25 51 0 0 chr11 96656647 96656686 -25187170 + AT_rich Low_complexity Low_complexity 1 39 0 3 1322 268 176 118 0 chr11 96657297 96657348 -25186508 - B1_Mur4 SINE Alu -60 90 34 3 1322 1114 82 0 13 chr11 96657366 96657515 -25186341 - B1_Mus2 SINE Alu 0 147 1 3 1322 519 211 78 9 chr11 96657561 96657676 -25186180 + B3A SINE B2 1 123 -75 3 1322 236 194 45 75 chr11 96657770 96657837 -25186019 - MT2B2 LTR ERVL -353 231 167 3 1322 431 65 113 0 chr11 96657777 96657839 -25186017 - B1_Mus2 SINE Alu -78 69 1 3 1322 812 194 11 74 chr11 96658001 96658190 -25185666 + B2_Mm2 SINE B2 2 178 -17 3 1322 301 264 2 5 chr11 96658204 96658280 -25185576 + B3A SINE B2 27 103 -95 3 1322 1032 47 0 0 chr11 96658294 96658421 -25185435 - B1_Mus1 SINE Alu 0 148 22 3 1322 542 210 86 142 chr11 96658300 96658533 -25185323 - B4 SINE B4 -72 220 1 3 1322 563 328 87 57 chr11 96658595 96658860 -25184996 - B4 SINE B4 -13 279 7 3 1322 321 242 156 10 chr11 96659042 96659138 -25184718 + PB1D10 SINE Alu 2 111 -6 4 1322 326 286 39 0 chr11 96659138 96659215 -25184641 + ID4_ SINE ID 1 80 -3 4 1322 3665 102 66 46 chr11 96659251 96659839 -25184017 - MT2B LTR ERVL -1 600 1 4 1322 800 220 305 61 chr11 96659878 96660334 -25183522 + RMER2 LTR ERV1 1 567 0 4 1322 989 101 0 57 chr11 96660472 96660630 -25183226 - B2_Mm2 SINE B2 0 195 47 4 1322 998 75 0 15 chr11 96660629 96660764 -25183092 + B1_Mus2 SINE Alu 15 147 0 4 1322 219 69 0 0 chr11 96660769 96660798 -25183058 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1322 201 74 0 0 chr11 96660838 96660865 -25182991 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 1322 1205 94 0 0 chr11 96660865 96661025 -25182831 - B2_Mm1t SINE B2 -33 160 1 4 1322 625 210 70 53 chr11 96661085 96661256 -25182600 + ID_B1 SINE B4 32 205 -19 4 1322 439 283 47 9 chr11 96661426 96661533 -25182323 + PB1D10 SINE Alu 1 111 -6 4 1322 822 143 8 8 chr11 96661665 96661792 -25182064 - B1_Mus1 SINE Alu -19 129 3 4 1322 201 244 0 0 chr11 96662881 96662926 -25180930 + GA-rich Low_complexity Low_complexity 3 47 0 4 1322 21 0 0 0 chr11 96663007 96663028 -25180828 + AT_rich Low_complexity Low_complexity 1 21 0 4 1322 457 291 47 8 chr11 96663028 96663156 -25180700 - B1F SINE Alu 0 149 17 4 1322 250 250 95 86 chr11 96663273 96663378 -25180478 + PB1D7 SINE Alu 15 120 0 4 1322 363 129 31 31 chr11 96663542 96663606 -25180250 + B1_Mus2 SINE Alu 84 147 0 4 1322 1074 75 7 20 chr11 96663610 96663760 -25180096 + B1_Mus1 SINE Alu 1 148 0 4 1322 347 0 23 0 chr11 96664353 96664396 -25179460 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 4 1322 360 271 84 0 chr11 96664990 96665097 -25178759 - PB1D10 SINE Alu -1 116 1 4 1322 1070 79 154 30 chr11 96665135 96665304 -25178552 + B2_Mm2 SINE B2 2 191 -4 4 1322 842 49 195 0 chr11 96665615 96665738 -25178118 + B1_Mus2 SINE Alu 1 147 0 4 1322 1012 141 36 42 chr11 96665842 96666034 -25177822 + B2_Mm2 SINE B2 1 191 -4 4 1322 295 294 18 89 chr11 96666215 96666327 -25177529 + B4 SINE B4 70 173 -119 4 1322 574 212 17 17 chr11 96666244 96666356 -25177500 + B1_Mur2 SINE Alu 6 117 -32 4 1322 741 208 0 0 chr11 96666356 96666476 -25177380 + URR1A DNA MER1_type 3 122 -104 4 1322 953 224 39 5 chr11 96666586 96666792 -25177064 + B3 SINE B2 1 213 -3 4 1322 1119 89 7 0 chr11 96666928 96667074 -25176782 - B1_Mm SINE Alu 0 147 1 4 1322 1134 82 0 13 chr11 96667386 96667535 -25176321 - B1_Mus2 SINE Alu 0 147 1 4 1322 615 116 10 31 chr11 96667643 96667741 -25176115 - B1_Mur4 SINE Alu 0 150 55 4 1322 236 288 77 77 chr11 96667695 96667838 -25176018 - RLTR25A LTR ERVK -531 572 430 4 1322 234 0 0 0 chr11 96668684 96668710 -25175146 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1322 302 269 26 0 chr11 96669036 96669114 -25174742 - L1MEg LINE L1 -4156 1928 1849 4 1322 280 246 114 30 chr11 96669478 96669597 -25174259 - PB1D10 SINE Alu 0 117 2 4 1322 776 119 0 0 chr11 96669979 96670088 -25173768 - B1_Mm SINE Alu -10 137 29 4 1322 830 244 9 49 chr11 96670130 96670354 -25173502 - B3 SINE B2 0 216 2 4 1322 478 288 9 9 chr11 96670469 96670581 -25173275 - B1F SINE Alu -26 123 12 4 1322 395 314 16 32 chr11 96670470 96670595 -25173261 - ID_B1 SINE B4 -24 200 78 4 1322 374 235 14 191 chr11 96670619 96670706 -25173150 - B1F2 SINE Alu -2 147 71 4 1322 1180 62 14 0 chr11 96670706 96670851 -25173005 + B1_Mus1 SINE Alu 2 148 0 4 1322 374 235 14 191 chr11 96670851 96670910 -25172946 - B1F2 SINE Alu -79 70 27 4 1322 1231 91 91 0 chr11 96670918 96671094 -25172762 - B2_Mm2 SINE B2 -3 192 1 4 1322 301 274 151 17 chr11 96671106 96671225 -25172631 - B3A SINE B2 -35 163 29 4 1322 660 176 159 28 chr11 96671243 96671419 -25172437 - B3 SINE B2 -17 199 1 4 1322 222 200 0 57 chr11 96671447 96671500 -25172356 - PB1D7 SINE Alu 0 120 71 4 1322 973 121 127 0 chr11 96671658 96671824 -25172032 - B2_Mm2 SINE B2 -7 188 2 4 1322 995 90 37 0 chr11 96671856 96671990 -25171866 - B1_Mus1 SINE Alu -9 139 1 4 1322 1594 43 0 0 chr11 96672124 96672311 -25171545 - B2_Mm1a SINE B2 -6 187 1 4 1322 1323 84 62 0 chr11 96672456 96672635 -25171221 + B2_Mm1t SINE B2 4 193 0 4 1322 310 306 35 53 chr11 96672655 96672769 -25171087 + B3A SINE B2 67 178 -20 4 1322 1161 69 7 0 chr11 96672804 96672949 -25170907 - B1_Mus1 SINE Alu -1 147 2 4 1322 697 246 45 57 chr11 96673004 96673181 -25170675 + B3 SINE B2 4 178 -38 4 1322 992 120 44 0 chr11 96673320 96673478 -25170378 - B2_Mm2 SINE B2 -27 168 4 4 1322 294 320 78 0 chr11 96673507 96673610 -25170246 - PB1D10 SINE Alu 0 117 7 4 1322 446 203 39 92 chr11 96674073 96674203 -25169653 + MT2B LTR ERVL 142 264 -337 4 1322 1040 50 14 35 chr11 96674097 96674241 -25169615 + B1_Mus1 SINE Alu 8 148 0 4 1322 229 217 65 0 chr11 96674367 96674413 -25169443 - PB1D9 SINE Alu -71 49 1 4 1322 1162 58 0 0 chr11 96674465 96674603 -25169253 - B1_Mus2 SINE Alu -9 138 1 4 1322 816 224 52 80 chr11 96674691 96674904 -25168952 - URR1B DNA MER1_type -18 207 1 4 1322 217 235 59 0 chr11 96675446 96675497 -25168359 - B1_Mur2 SINE Alu -7 142 89 4 1322 606 117 307 0 chr11 96675571 96675708 -25168148 + B2_Mm2 SINE B2 3 181 -14 4 1322 575 140 109 27 chr11 96675712 96675822 -25168034 - PB1D9 SINE Alu 0 120 2 4 1322 26 0 0 0 chr11 96675822 96675848 -25168008 + AT_rich Low_complexity Low_complexity 1 26 0 4 1322 385 215 12 25 chr11 96675898 96675979 -25167877 + ID_B1 SINE B4 124 203 -21 4 1322 553 271 75 14 chr11 96676001 96676147 -25167709 + B3A SINE B2 9 163 -35 4 1322 599 220 17 0 chr11 96676284 96676402 -25167454 - PB1D9 SINE Alu 0 120 1 4 1322 749 178 40 40 chr11 96676442 96676618 -25167238 + B2_Mm2 SINE B2 5 180 -15 4 1322 781 201 43 0 chr11 96676618 96676757 -25167099 + B1_Mus1 SINE Alu 2 146 -2 4 1322 380 250 68 43 chr11 96676774 96676891 -25166965 + PB1D9 SINE Alu 1 120 0 4 1322 1115 80 0 0 chr11 96677026 96677164 -25166692 - B1_Mm SINE Alu -8 139 2 4 1322 232 300 171 0 chr11 96677486 96677556 -25166300 + B1F1 SINE Alu 11 92 -57 4 1322 643 230 115 101 chr11 96677560 96677601 -25166255 + B3 SINE B2 3 42 -174 4 1322 579 213 88 7 chr11 96677601 96677738 -25166118 + B1_Mus1 SINE Alu 1 148 0 4 1322 643 230 115 101 chr11 96677738 96677904 -25165952 + B3 SINE B2 43 213 -3 4 1322 216 151 38 0 chr11 96679025 96679078 -25164778 + A-rich Low_complexity Low_complexity 2 56 0 4 1322 270 206 0 0 chr11 96681252 96681315 -25162541 + GA-rich Low_complexity Low_complexity 2 64 0 4 1322 326 216 95 0 chr11 96682176 96682250 -25161606 + ID2 SINE ID 2 82 -1 4 1322 183 42 0 0 chr11 96686114 96686138 -25157718 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1322 397 264 15 129 chr11 96687126 96687286 -25156570 + B1F2 SINE Alu 1 144 -5 4 1322 263 254 27 53 chr11 96687438 96687513 -25156343 - MER20 DNA MER1_type -77 142 70 4 1322 31 0 0 0 chr11 96690056 96690087 -25153769 + AT_rich Low_complexity Low_complexity 1 31 0 4 1322 233 339 0 0 chr11 96690108 96690170 -25153686 + PB1D10 SINE Alu 35 96 -21 4 1322 221 167 0 0 chr11 96690216 96690252 -25153604 + ID4_ SINE ID 48 83 0 4 1322 311 242 152 40 chr11 96692140 96692239 -25151617 - MER5A DNA MER1_type -79 110 1 4 1322 376 252 37 96 chr11 96692676 96692779 -25151077 + B1_Mur1 SINE Alu 4 120 -29 4 1322 1315 165 183 46 chr11 96692779 96693129 -25150727 + RMER10B LTR ERVL 1 398 0 4 1322 370 252 37 96 chr11 96693129 96693161 -25150695 + B1_Mur2 SINE Alu 99 130 -19 4 1322 292 252 0 231 chr11 96693161 96693204 -25150652 + ID_B1 SINE B4 161 222 -2 4 1322 1448 47 5 103 chr11 96693368 96693422 -25150434 + B2_Mm1t SINE B2 1 48 -145 4 1322 1510 62 5 0 chr11 96693422 96693614 -25150242 - B2_Mm1a SINE B2 0 193 1 4 1322 1448 47 5 103 chr11 96693614 96693773 -25150083 + B2_Mm1t SINE B2 49 193 0 4 1322 410 209 42 34 chr11 96693850 96693969 -25149887 - PB1D7 SINE Alu 0 120 1 4 1322 188 0 74 0 chr11 96694135 96694162 -25149694 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1322 523 55 0 14 chr11 96694162 96694229 -25149627 - B1_Mur4 SINE Alu -10 140 74 4 1322 1169 261 50 30 chr11 96694418 96694757 -25149099 + ORR1D2 LTR MaLR 25 370 0 4 1322 1494 53 27 0 chr11 96694851 96695038 -25148818 + B2_Mm1a SINE B2 2 193 0 4 1322 1136 68 0 20 chr11 96695774 96695923 -25147933 - B1_Mus2 SINE Alu -1 146 1 4 1322 329 115 39 0 chr11 96695923 96695975 -25147881 - B1_Mur4 SINE Alu -65 85 32 4 1322 273 272 49 0 chr11 96695975 96696004 -25147852 - MT2B LTR ERVL -362 239 155 4 1322 427 183 70 0 chr11 96696223 96696294 -25147562 - ID4_ SINE ID -5 78 3 4 1322 501 238 49 8 chr11 96696304 96696427 -25147429 - B1F SINE Alu -5 144 17 4 1322 489 17 0 0 chr11 96696459 96696517 -25147339 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 4 1322 1222 41 0 7 chr11 96696517 96696655 -25147201 - B1_Mus2 SINE Alu -9 138 1 4 1322 475 277 18 65 chr11 96696689 96696859 -25146997 - RSINE1 SINE B4 0 165 4 5 1322 24 0 0 0 chr11 96696860 96696884 -25146972 + AT_rich Low_complexity Low_complexity 1 24 0 5 1322 367 232 135 10 chr11 96697066 96697162 -25146694 - B1F2 SINE Alu 0 149 42 5 1322 2765 86 66 81 chr11 96697164 96697646 -25146210 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1322 2417 71 6 66 chr11 96697880 96698228 -25145628 + ORR1A2 LTR MaLR 1 327 0 5 1322 226 257 123 41 chr11 96698349 96698422 -25145434 + ID4 SINE ID 4 82 -1 5 1322 477 218 8 91 chr11 96699016 96699137 -25144719 + RSINE1 SINE B4 55 165 0 5 1322 428 297 8 71 chr11 96699416 96699543 -25144313 + PB1D9 SINE Alu 2 120 0 5 1322 308 255 143 0 chr11 96699554 96699652 -25144204 + PB1D10 SINE Alu 6 117 0 5 1322 1428 206 153 50 chr11 96699655 96700117 -25143739 + RMER4B LTR ERVK 33 465 -1 5 1322 442 256 21 92 chr11 96700117 96700258 -25143598 + ID_B1 SINE B4 90 220 -4 5 1322 312 301 81 58 chr11 96700554 96700727 -25143129 + MER5B DNA MER1_type 1 177 -1 5 1322 1208 49 0 14 chr11 96701042 96701188 -25142668 + B1_Mus1 SINE Alu 5 148 0 5 1322 534 220 16 25 chr11 96701314 96701435 -25142421 + B1F1 SINE Alu 30 149 0 5 1322 556 265 37 0 chr11 96701499 96701635 -25142221 - ID_B1 SINE B4 -3 221 81 5 1322 428 298 54 42 chr11 96702177 96702196 -25141660 - B3A SINE B2 0 198 181 5 1322 555 56 0 0 chr11 96702196 96702267 -25141589 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1322 428 298 54 42 chr11 96702267 96702415 -25141441 - B3A SINE B2 -18 180 30 5 1322 946 189 0 0 chr11 96702443 96702591 -25141265 - B1_Mur4 SINE Alu -2 148 1 5 1322 1102 55 7 7 chr11 96702610 96702757 -25141099 - B1_Mus1 SINE Alu 0 148 2 5 1322 522 213 40 124 chr11 96702757 96702789 -25141067 - B4A SINE B4 -213 79 63 5 1322 1453 78 0 15 chr11 96702833 96703029 -25140827 - B2_Mm2 SINE B2 -1 194 2 5 1322 204 40 0 0 chr11 96703030 96703055 -25140801 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 5 1322 757 204 15 0 chr11 96703055 96703187 -25140669 - B1_Mur2 SINE Alu -13 136 3 5 1322 477 278 0 50 chr11 96703190 96703311 -25140545 - PB1D10 SINE Alu -2 115 1 5 1322 916 243 92 27 chr11 96703338 96703600 -25140256 - B4 SINE B4 0 292 14 5 1322 1490 73 16 0 chr11 96703923 96704115 -25139741 + B2_Mm2 SINE B2 1 195 0 5 1322 957 200 87 5 chr11 96704530 96704726 -25139130 - B3 SINE B2 -4 212 1 5 1322 234 62 0 0 chr11 96705098 96705130 -25138726 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 5 1322 336 48 0 0 chr11 96705170 96705212 -25138644 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1322 586 121 0 0 chr11 96705212 96705295 -25138561 - B1_Mus2 SINE Alu 0 147 65 5 1322 375 142 0 5 chr11 96705341 96705406 -25138450 - B2_Mm2 SINE B2 -107 109 47 5 1322 1518 60 16 0 chr11 96705475 96705659 -25138197 + B2_Mm2 SINE B2 1 187 -8 5 1322 1484 65 5 0 chr11 96705683 96705867 -25137989 - B2_Mm1t SINE B2 -7 186 2 5 1322 2854 97 86 16 chr11 96706455 96706913 -25136943 - RMER16 LTR ERVK 0 533 1 5 1322 322 161 36 0 chr11 96707226 96707282 -25136574 + RMER10B LTR ERVL 1 58 -340 5 1322 1381 69 11 0 chr11 96707289 96707464 -25136392 + B2_Mm1t SINE B2 3 179 -14 5 1322 305 109 365 17 chr11 96707496 96707603 -25136253 + B2_Mm2 SINE B2 47 190 -5 5 1322 1081 81 121 6 chr11 96707607 96707761 -25136095 + B2_Mm1a SINE B2 1 158 -35 5 1322 387 0 0 0 chr11 96707761 96707804 -25136052 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 5 1322 1081 81 121 6 chr11 96707804 96707822 -25136034 + B2_Mm1a SINE B2 159 191 -2 5 1322 1613 135 110 7 chr11 96707825 96707955 -25135901 + RMER10B LTR ERVL 69 197 -201 5 1322 571 11 22 33 chr11 96707955 96708046 -25135810 + (TTCTC)n Simple_repeat Simple_repeat 4 93 0 5 1322 1613 135 110 7 chr11 96708046 96708214 -25135642 + RMER10B LTR ERVL 198 398 0 5 1322 436 172 178 20 chr11 96708214 96708315 -25135541 + B1_Mus2 SINE Alu 30 146 -1 5 1322 287 134 433 0 chr11 96708348 96708415 -25135441 + B3 SINE B2 1 96 -120 5 1322 552 279 75 152 chr11 96708507 96708909 -25134947 - RLTR12B LTR ERVK -133 395 25 5 1322 227 122 0 39 chr11 96708948 96708999 -25134857 + B3 SINE B2 167 215 -1 5 1322 241 245 20 0 chr11 96709023 96709072 -25134784 - RSINE1 SINE B4 -63 102 53 5 1322 23 0 0 0 chr11 96709154 96709177 -25134679 + AT_rich Low_complexity Low_complexity 1 23 0 5 1322 468 117 112 38 chr11 96709189 96709269 -25134587 - B1_Mus2 SINE Alu -56 91 6 5 1322 405 0 0 0 chr11 96709277 96709322 -25134534 + (TTA)n Simple_repeat Simple_repeat 2 46 0 5 1322 885 196 0 0 chr11 96709324 96709462 -25134394 - B1_Mur1 SINE Alu -10 139 2 5 1322 628 233 131 82 chr11 96709466 96709672 -25134184 - B3 SINE B2 0 216 1 5 1322 554 310 0 0 chr11 96709704 96709846 -25134010 + RSINE1 SINE B4 5 146 -19 5 1322 1392 84 16 10 chr11 96710456 96710649 -25133207 + B2_Mm2 SINE B2 1 194 -1 5 1322 899 84 20 3 chr11 96710652 96710783 -25133073 + B1_Mm SINE Alu 32 147 0 5 1322 27 49 0 0 chr11 96711144 96711185 -25132671 + GC_rich Low_complexity Low_complexity 1 41 0 5 1322 413 371 26 0 chr11 96712451 96712602 -25131254 - MIR3 SINE MIR -6 202 48 5 1322 451 252 114 13 chr11 96712712 96712861 -25130995 + RSINE1 SINE B4 1 164 -1 5 1322 369 0 0 0 chr11 96712861 96712902 -25130954 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 1322 678 159 44 0 chr11 96712971 96713084 -25130772 + PB1D9 SINE Alu 2 119 -1 5 1322 237 65 0 0 chr11 96713100 96713131 -25130725 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5 1322 1152 136 11 0 chr11 96713131 96713307 -25130549 + B2_Mm1t SINE B2 2 179 -14 5 1322 186 43 0 0 chr11 96713312 96713335 -25130521 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1322 244 255 0 68 chr11 96713431 96713490 -25130366 - PB1D7 SINE Alu -61 59 5 5 1322 252 0 0 0 chr11 96713496 96713524 -25130332 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1322 222 37 0 0 chr11 96713526 96713553 -25130303 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1322 634 189 94 0 chr11 96713554 96713681 -25130175 - B1_Mus2 SINE Alu -7 140 2 5 1322 646 189 79 0 chr11 96713709 96713836 -25130020 - B1F SINE Alu 0 149 13 5 1322 604 193 26 0 chr11 96713847 96713961 -25129895 - PB1D10 SINE Alu 0 117 1 5 1322 1096 64 7 0 chr11 96714228 96714369 -25129487 + B1_Mus1 SINE Alu 7 148 0 5 1322 1430 83 0 6 chr11 96714391 96714572 -25129284 - B2_Mm2 SINE B2 -14 181 2 5 1322 314 247 77 22 chr11 96716216 96716307 -25127549 - PB1D10 SINE Alu -17 100 5 5 1322 337 276 19 23 chr11 96717301 96717439 -25126417 - MIRc SINE MIR -21 187 52 5 1322 387 0 0 0 chr11 96717439 96717482 -25126374 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1322 324 0 0 0 chr11 96717482 96717517 -25126339 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1322 1414 65 11 5 chr11 96718276 96718462 -25125394 + B2_Mm1t SINE B2 1 187 -6 5 1322 344 254 30 0 chr11 96718603 96718670 -25125186 + ID4 SINE ID 4 72 -11 5 1322 219 36 0 0 chr11 96719365 96719393 -25124463 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1322 478 255 35 7 chr11 96719720 96719862 -25123994 + B1_Mm SINE Alu 1 146 -1 5 1322 609 197 103 29 chr11 96719863 96719999 -25123857 + ID_B1 SINE B4 70 215 -9 5 1322 391 273 154 0 chr11 96720014 96720124 -25123732 + RSINE1 SINE B4 3 129 -36 5 1322 1420 65 38 0 chr11 96720164 96720350 -25123506 - B2_Mm2 SINE B2 -2 193 1 5 1322 1074 176 50 20 chr11 96720409 96720613 -25123243 + B3 SINE B2 2 211 -5 5 1322 1151 15 15 0 chr11 96720625 96720759 -25123097 + B1_Mus2 SINE Alu 1 136 -11 5 1322 534 31 0 0 chr11 96720760 96720824 -25123032 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1322 1058 103 21 0 chr11 96720966 96721111 -25122745 + B1_Mus1 SINE Alu 1 148 0 5 1322 405 229 0 12 chr11 96721368 96721452 -25122404 - PB1D10 SINE Alu -14 103 21 5 1322 371 73 18 0 chr11 96722539 96722594 -25121262 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1322 288 0 0 0 chr11 96723712 96723744 -25120112 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 5 1322 493 259 0 17 chr11 96724313 96724431 -25119425 + ID_B1 SINE B4 83 198 -26 5 1322 541 0 29 0 chr11 96725007 96725076 -25118780 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1322 346 244 0 55 chr11 96725347 96725438 -25118418 + PB1D7 SINE Alu 34 119 -1 5 1322 803 180 25 123 chr11 96725720 96725923 -25117933 + B2_Mm2 SINE B2 4 186 -9 5 1322 212 136 34 0 chr11 96725998 96726057 -25117799 + T-rich Low_complexity Low_complexity 4 64 0 5 1322 1169 75 0 0 chr11 96726057 96726204 -25117652 - B1_Mus2 SINE Alu 0 147 1 5 1322 1248 48 0 0 chr11 96726457 96726604 -25117252 + B1_Mus1 SINE Alu 2 148 0 5 1322 24 0 0 0 chr11 96726604 96726628 -25117228 + AT_rich Low_complexity Low_complexity 1 24 0 5 1322 488 145 0 0 chr11 96726670 96726746 -25117110 + B2_Mm2 SINE B2 64 139 -56 5 1322 225 0 0 0 chr11 96726753 96726778 -25117078 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1322 835 162 21 0 chr11 96726804 96726946 -25116910 + B1_Mur3 SINE Alu 4 148 -1 5 1322 480 285 53 35 chr11 96727223 96727394 -25116462 - ID_B1 SINE B4 -48 176 3 5 1322 1080 75 0 0 chr11 96727600 96727734 -25116122 + B1_Mm SINE Alu 1 134 -13 5 1322 851 112 8 0 chr11 96727735 96727869 -25115987 + (GAA)n Simple_repeat Simple_repeat 1 135 0 5 1322 532 295 14 7 chr11 96728231 96728371 -25115485 + RSINE1 SINE B4 3 143 -22 6 1322 786 209 7 7 chr11 96728396 96728550 -25115306 + (TAA)n Simple_repeat Simple_repeat 1 154 0 6 1322 230 230 255 20 chr11 96729115 96729217 -25114639 - B4A SINE B4 -59 233 108 6 1322 499 141 14 21 chr11 96729128 96729230 -25114626 - PB1D10 SINE Alu -7 113 10 6 1322 1142 62 14 0 chr11 96729264 96729409 -25114447 + B1_Mus1 SINE Alu 2 148 0 6 1322 210 150 0 0 chr11 96729409 96729449 -25114407 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1322 198 143 0 0 chr11 96729457 96729492 -25114364 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 1322 1317 54 0 0 chr11 96729502 96729670 -25114186 - B2_Mm2 SINE B2 -26 169 2 6 1322 303 28 0 0 chr11 96729679 96729715 -25114141 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 6 1322 1264 48 0 0 chr11 96729853 96730000 -25113856 - B1_Mus1 SINE Alu 0 148 2 6 1322 241 226 48 0 chr11 96730039 96730101 -25113755 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 6 1322 694 288 45 0 chr11 96730136 96730334 -25113522 - ID_B1 SINE B4 -15 209 3 6 1322 1062 97 14 0 chr11 96730372 96730517 -25113339 - B1_Mus1 SINE Alu -1 147 1 6 1322 254 234 64 13 chr11 96730684 96730762 -25113094 - ID4 SINE ID 0 83 2 6 1322 596 266 100 11 chr11 96730836 96730884 -25112972 - B3A SINE B2 0 216 157 6 1322 479 91 26 0 chr11 96730884 96730961 -25112895 + (TATG)n Simple_repeat Simple_repeat 4 82 0 6 1322 596 259 86 0 chr11 96730961 96731106 -25112750 - B3A SINE B2 -34 164 6 6 165 617 273 96 5 chr11 96731120 96731319 -25112537 - B4A SINE B4 -73 219 3 6 1323 497 144 11 0 chr11 96731402 96731492 -25112364 + CT-rich Low_complexity Low_complexity 1 91 0 6 1323 310 279 0 0 chr11 96732364 96732443 -25111413 + ID_B1 SINE B4 145 223 -1 6 1323 611 267 0 39 chr11 96732444 96732647 -25111209 - HAL1-2a_MD LINE L1 -517 2507 2313 6 1323 273 257 169 13 chr11 96733206 96733313 -25110543 + PB1D7 SINE Alu 7 132 -17 6 1323 1497 48 5 26 chr11 96733364 96733558 -25110298 + B2_Mm2 SINE B2 2 191 -4 6 1323 447 19 0 0 chr11 96734638 96734690 -25109166 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1323 274 289 73 20 chr11 96735435 96735554 -25108302 + MIR3 SINE MIR 75 196 -72 6 1323 399 21 0 0 chr11 96735827 96735875 -25107981 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1323 189 107 0 0 chr11 96736565 96736593 -25107263 + (CCTG)n Simple_repeat Simple_repeat 2 29 0 6 1323 1136 161 96 19 chr11 96736598 96736807 -25107049 - URR1A DNA MER1_type -1 225 1 6 1323 202 296 0 0 chr11 96737522 96737593 -25106263 + G-rich Low_complexity Low_complexity 1 71 0 6 1323 190 244 0 0 chr11 96738765 96738806 -25105050 + MIRc SINE MIR 113 153 -115 6 1323 1193 62 0 7 chr11 96738940 96739087 -25104769 - B1_Mus2 SINE Alu 0 147 2 6 1323 484 331 0 7 chr11 96739158 96739298 -25104558 - ID_B1 SINE B4 -15 209 71 6 1323 721 243 28 0 chr11 96739361 96739505 -25104351 + RSINE1 SINE B4 3 150 -15 6 1323 180 0 0 0 chr11 96739763 96739783 -25104073 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1323 614 132 19 9 chr11 96739922 96740029 -25103827 - PB1D9 SINE Alu -12 108 1 6 1323 245 333 62 8 chr11 96740592 96740722 -25103134 + MARNA DNA Mariner 17 153 -433 6 1323 264 217 33 98 chr11 96740918 96741010 -25102846 + PB1 SINE Alu 42 127 0 6 1323 222 248 34 0 chr11 96741030 96741101 -25102755 + CT-rich Low_complexity Low_complexity 1 73 0 6 1323 788 129 0 0 chr11 96741103 96741219 -25102637 - B1_Mur2 SINE Alu -7 142 27 6 1323 237 116 0 0 chr11 96741219 96741262 -25102594 - RMER19C LTR ERVK 0 611 569 6 1323 1215 49 0 0 chr11 96741293 96741435 -25102421 - B1_Mus1 SINE Alu -5 143 2 6 1323 1983 212 82 61 chr11 96741435 96742008 -25101848 - RMER19C LTR ERVK -26 585 1 6 1323 346 287 42 34 chr11 96742039 96742158 -25101698 - PB1D7 SINE Alu 0 120 1 6 1323 352 345 9 0 chr11 96742166 96742276 -25101580 + PB1D10 SINE Alu 3 113 -4 6 1323 348 228 97 11 chr11 96742294 96742387 -25101469 + B4A SINE B4 186 286 -6 6 1323 216 0 0 0 chr11 96742394 96742418 -25101438 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1323 253 313 0 68 chr11 96742453 96742556 -25101300 - PB1D10 SINE Alu -21 96 1 6 1323 299 323 57 13 chr11 96742613 96742770 -25101086 + L3 LINE CR1 3543 3706 -783 6 1323 222 383 32 84 chr11 96742799 96742953 -25100903 + B4 SINE B4 65 210 -82 6 1323 553 135 0 11 chr11 96742875 96742965 -25100891 + B1_Mur2 SINE Alu 44 132 -17 6 1323 542 266 68 43 chr11 96743106 96743267 -25100589 + RSINE1 SINE B4 1 165 0 6 1323 427 138 23 0 chr11 96743267 96743354 -25100502 + (CATA)n Simple_repeat Simple_repeat 3 91 0 6 1323 1062 48 0 40 chr11 96743376 96743528 -25100328 + B1_Mm SINE Alu 2 147 0 6 1323 242 235 147 0 chr11 96743577 96743645 -25100211 + ID_B1 SINE B4 146 223 -1 6 1323 978 236 28 9 chr11 96743985 96744199 -25099657 - ID_B1 SINE B4 -6 218 1 6 1323 243 103 0 0 chr11 96744203 96744242 -25099614 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1323 525 271 39 0 chr11 96744243 96744372 -25099484 - B1F SINE Alu -15 134 1 6 1323 899 179 0 6 chr11 96744387 96744567 -25099289 + CT-rich Low_complexity Low_complexity 2 180 0 6 1323 229 65 0 0 chr11 96744567 96744598 -25099258 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1323 467 174 23 11 chr11 96744751 96744838 -25099018 + B3A SINE B2 1 88 -110 6 1323 1016 54 0 0 chr11 96744901 96745031 -25098825 + B1_Mm SINE Alu 18 147 0 6 1323 252 123 13 27 chr11 96745032 96745107 -25098749 + A-rich Low_complexity Low_complexity 3 76 0 6 1323 213 232 164 55 chr11 96745892 96745965 -25097891 - ID4_ SINE ID 0 83 3 6 1323 309 51 0 0 chr11 96745976 96746015 -25097841 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1323 734 224 7 7 chr11 96746017 96746152 -25097704 - B1_Mur2 SINE Alu -13 136 2 6 1323 342 290 19 9 chr11 96746153 96746261 -25097595 - PB1D7 SINE Alu -10 110 2 6 1323 429 188 9 98 chr11 96746394 96746506 -25097350 - PB1D10 SINE Alu -2 115 14 6 1323 205 208 19 0 chr11 96747179 96747232 -25096624 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 6 1323 235 328 0 0 chr11 96748250 96748314 -25095542 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1323 200 163 0 23 chr11 96748332 96748376 -25095480 + GA-rich Low_complexity Low_complexity 4 46 0 6 1323 784 240 78 22 chr11 96748811 96749034 -25094822 - B3 SINE B2 0 216 2 6 1323 699 201 19 43 chr11 96749486 96749647 -25094209 + B3 SINE B2 57 213 -3 6 1323 233 345 17 33 chr11 96749762 96749882 -25093974 - MER63B DNA AcHobo -1 435 318 6 1323 274 232 0 92 chr11 96749914 96749990 -25093866 + ID4 SINE ID 2 70 -13 6 1323 337 130 33 0 chr11 96749992 96750084 -25093772 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 6 1323 791 198 159 0 chr11 96750589 96750771 -25093085 - B3 SINE B2 -1 215 5 6 1323 1131 75 7 20 chr11 96750813 96750962 -25092894 + B1_Mur3 SINE Alu 3 149 0 6 1323 22 0 0 0 chr11 96750962 96750984 -25092872 + AT_rich Low_complexity Low_complexity 1 22 0 6 1323 256 192 108 60 chr11 96751017 96751100 -25092756 + PB1D9 SINE Alu 21 107 -13 6 1323 389 20 20 0 chr11 96751100 96751150 -25092706 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1323 486 254 34 34 chr11 96751181 96751328 -25092528 - B1F SINE Alu -2 147 1 6 1323 267 291 16 93 chr11 96751219 96751348 -25092508 - MT2B2 LTR ERVL -319 265 147 6 1323 245 328 101 0 chr11 96751494 96751613 -25092243 - L1MA7 LINE L1 -328 5963 5803 6 1323 22 0 0 0 chr11 96751619 96751641 -25092215 + AT_rich Low_complexity Low_complexity 1 22 0 6 1323 446 326 106 0 chr11 96751668 96751809 -25092047 - RSINE1 SINE B4 -8 157 2 6 1323 729 310 58 26 chr11 96751837 96752148 -25091708 - L1MA7 LINE L1 -451 5840 5520 6 1323 322 74 0 36 chr11 96752513 96752569 -25091287 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1323 418 311 195 0 chr11 96752572 96752635 -25091221 - B4A SINE B4 -14 278 86 6 1323 507 204 31 0 chr11 96752635 96752733 -25091123 - B1_Mur2 SINE Alu -48 101 1 6 1323 611 279 17 28 chr11 96752776 96752953 -25090903 - B3A SINE B2 -1 197 23 6 1323 307 87 0 0 chr11 96752981 96753027 -25090829 + B1_Mur4 SINE Alu 41 86 -64 6 1323 188 288 17 0 chr11 96754136 96754195 -25089661 + MIRc SINE MIR 83 142 -126 6 1323 1341 105 5 0 chr11 96755371 96755561 -25088295 - B2_Mm1t SINE B2 -1 192 2 6 1323 294 29 0 0 chr11 96755564 96755599 -25088257 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1323 506 283 0 0 chr11 96755600 96755706 -25088150 - PB1D10 SINE Alu -11 106 1 6 1323 28 0 0 0 chr11 96755716 96755744 -25088112 + AT_rich Low_complexity Low_complexity 1 28 0 6 1323 364 224 0 13 chr11 96755807 96755884 -25087972 - ID2 SINE ID 0 83 8 6 1323 409 198 48 105 chr11 96755897 96756021 -25087835 - PB1D10 SINE Alu 0 117 1 6 1323 1263 110 16 32 chr11 96756085 96756273 -25087583 + B2_Mm2 SINE B2 2 186 -9 6 1323 753 198 2 9 chr11 96756307 96756448 -25087408 + B3A SINE B2 24 163 -32 6 1323 540 124 0 0 chr11 96756448 96756553 -25087303 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 1323 424 237 107 95 chr11 96756553 96756579 -25087277 + B2_Mm2 SINE B2 164 193 -2 6 1323 863 130 18 6 chr11 96756767 96756937 -25086919 + (TG)n Simple_repeat Simple_repeat 1 172 0 6 1323 1077 49 0 14 chr11 96757053 96757198 -25086658 + B1_Mus1 SINE Alu 6 148 0 6 1323 622 115 0 0 chr11 96757234 96757330 -25086526 + BC1_Mm scRNA scRNA 2 97 -55 7 1323 721 230 11 63 chr11 96757373 96757563 -25086293 + B3A SINE B2 4 183 -15 7 1323 453 351 0 15 chr11 96757644 96757780 -25086076 + RSINE1 SINE B4 6 139 -26 7 1323 396 0 0 0 chr11 96757782 96757826 -25086030 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1323 542 279 41 22 chr11 96759144 96759315 -25084541 - B3A SINE B2 -30 186 2 7 1323 387 149 42 11 chr11 96759327 96759422 -25084434 - L1Md_F2 LINE L1 0 6582 6485 7 1323 760 139 21 55 chr11 96759765 96759910 -25083946 - ID_B1 SINE B4 -6 218 79 7 1323 1286 104 27 11 chr11 96759957 96760141 -25083715 + B2_Mm2 SINE B2 1 187 -8 7 1323 511 165 8 8 chr11 96760148 96760255 -25083601 + (TA)n Simple_repeat Simple_repeat 2 108 0 7 1323 270 0 0 0 chr11 96760255 96760285 -25083571 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1323 511 165 8 8 chr11 96760285 96760299 -25083557 + (TA)n Simple_repeat Simple_repeat 2 15 0 7 1323 192 152 0 0 chr11 96760422 96760455 -25083401 + T-rich Low_complexity Low_complexity 1 33 0 7 1323 223 282 11 34 chr11 96761133 96761221 -25082635 + GA-rich Low_complexity Low_complexity 4 89 0 7 1323 441 0 0 0 chr11 96763069 96763118 -25080738 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 7 1323 283 233 13 52 chr11 96763161 96763238 -25080618 - ID2 SINE ID -8 75 2 7 1323 740 179 7 0 chr11 96763782 96763933 -25079923 + CT-rich Low_complexity Low_complexity 3 154 0 7 1323 333 192 77 0 chr11 96765296 96765374 -25078482 - PB1D9 SINE Alu -33 87 4 7 1323 236 171 0 6 chr11 96765496 96765545 -25078311 + PB1D7 SINE Alu 15 61 -59 7 1323 1261 48 0 0 chr11 96765590 96765737 -25078119 + B1_Mus2 SINE Alu 1 147 0 7 1323 524 7 131 0 chr11 96765742 96765887 -25077969 + (GGGA)n Simple_repeat Simple_repeat 2 165 0 7 1323 279 114 0 0 chr11 96765880 96765924 -25077932 + (GAA)n Simple_repeat Simple_repeat 1 44 0 7 1323 758 188 57 19 chr11 96766068 96766225 -25077631 + URR1B DNA MER1_type 1 163 -62 7 1323 632 275 21 94 chr11 96766387 96766620 -25077236 - ID_B1 SINE B4 -1 223 8 7 1323 21 36 0 0 chr11 96770285 96770313 -25073543 + GC_rich Low_complexity Low_complexity 1 28 0 7 1323 479 291 14 47 chr11 96770676 96770824 -25073032 + RSINE1 SINE B4 23 165 0 7 1323 224 325 33 78 chr11 96770677 96770857 -25072999 + B2_Mm2 SINE B2 23 194 -1 7 1323 298 370 22 7 chr11 96770985 96771121 -25072735 + L2a LINE L2 3272 3409 -17 7 1323 259 286 265 22 chr11 96771658 96771683 -25072173 + B4 SINE B4 60 224 -64 7 1323 476 103 290 0 chr11 96771683 96771790 -25072066 + B1_Mur1 SINE Alu 10 147 -2 7 1323 271 233 128 0 chr11 96771859 96771945 -25071911 - ID_B1 SINE B4 -1 223 127 7 1323 237 320 106 0 chr11 96773772 96773900 -25069956 + MIR SINE MIR 23 167 -101 7 1323 252 0 0 0 chr11 96775604 96775632 -25068224 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 1323 570 193 57 50 chr11 96775632 96775790 -25068066 - B1_Mur2 SINE Alu -13 137 2 7 1323 1736 16 0 5 chr11 96775805 96775999 -25067857 - B2_Mm1a SINE B2 0 193 1 7 1323 734 263 6 0 chr11 96776041 96776197 -25067659 - RSINE1 SINE B4 -6 159 3 7 1323 181 250 0 40 chr11 96776199 96776249 -25067607 + MIR SINE MIR 99 146 -62 7 1323 402 184 255 0 chr11 96776811 96776909 -25066947 - B1_Mur2 SINE Alu -5 144 22 7 1323 435 296 0 0 chr11 96776944 96777052 -25066804 - B1F SINE Alu -40 109 2 7 1323 276 308 44 80 chr11 96777052 96777080 -25066776 - B4A SINE B4 -202 90 67 7 1323 1053 29 22 0 chr11 96778317 96778455 -25065401 + B1_Mm SINE Alu 7 147 0 7 1323 216 0 0 0 chr11 96778455 96778479 -25065377 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1323 1019 123 7 0 chr11 96779068 96779214 -25064642 + B1_Mus1 SINE Alu 1 147 -1 7 1323 288 0 0 0 chr11 96779215 96779247 -25064609 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1323 186 325 82 41 chr11 96779697 96779819 -25064037 + MIR SINE MIR 81 207 -55 7 1323 822 224 52 5 chr11 96779831 96780042 -25063814 + ID_B1 SINE B4 2 222 -2 7 1323 884 116 239 44 chr11 96780060 96780240 -25063616 + B3 SINE B2 1 215 -1 7 1323 387 354 54 40 chr11 96781081 96781305 -25062551 - MIRb SINE MIR -16 252 26 7 1323 294 29 0 0 chr11 96781604 96781639 -25062217 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1323 481 204 27 7 chr11 96781643 96781791 -25062065 + GA-rich Low_complexity Low_complexity 1 151 0 7 1323 231 167 0 0 chr11 96782842 96782884 -25060972 + CT-rich Low_complexity Low_complexity 1 42 0 7 1323 2906 53 185 46 chr11 96783034 96783336 -25060520 - MT2C_Mm LTR ERVL 0 475 110 7 1323 1493 53 5 55 chr11 96783336 96783537 -25060319 + B2_Mm1t SINE B2 1 191 -2 7 1323 2906 53 185 46 chr11 96783537 96783651 -25060205 - MT2C_Mm LTR ERVL -366 109 1 7 1323 391 220 188 9 chr11 96783789 96783964 -25059892 - MLT1C LTR MaLR -267 200 6 7 1323 398 144 0 0 chr11 96784289 96784360 -25059496 - B1_Mus2 SINE Alu -1 146 49 7 1323 759 163 96 0 chr11 96784360 96784391 -25059465 - B1_Mur4 SINE Alu 0 150 107 7 1323 1184 48 7 14 chr11 96784391 96784539 -25059317 - B1_Mus1 SINE Alu 0 148 2 7 1323 759 163 96 0 chr11 96784539 96784642 -25059214 - B1_Mur4 SINE Alu -44 106 4 7 1323 1035 207 15 10 chr11 96784659 96784864 -25058992 - B3 SINE B2 -5 211 6 7 1323 324 213 0 0 chr11 96784914 96784975 -25058881 - B1_Mur4 SINE Alu -83 67 7 7 1323 227 255 147 28 chr11 96784916 96785025 -25058831 - B4A SINE B4 -143 149 28 7 1323 257 286 0 0 chr11 96785007 96785070 -25058786 - B4 SINE B4 -158 134 72 7 1323 414 295 26 43 chr11 96785089 96785206 -25058650 - PB1D7 SINE Alu -1 119 5 7 1323 230 256 207 0 chr11 96785755 96785837 -25058019 + PB1D10 SINE Alu 5 103 -14 7 1323 318 351 0 15 chr11 96785916 96786049 -25057807 + MLT1D LTR MaLR 344 474 -31 7 1323 287 261 150 18 chr11 96786093 96786206 -25057650 + B1F1 SINE Alu 1 128 -21 7 1323 405 0 0 0 chr11 96786700 96786745 -25057111 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1323 770 196 35 14 chr11 96788150 96788295 -25055561 + B1_Mur2 SINE Alu 2 149 0 7 1323 225 154 0 0 chr11 96788358 96788397 -25055459 + T-rich Low_complexity Low_complexity 1 39 0 7 1323 1198 48 7 0 chr11 96788397 96788543 -25055313 - B1_Mus2 SINE Alu 0 147 1 7 1323 1041 155 129 0 chr11 96788937 96789130 -25054726 - URR1A DNA MER1_type -8 218 1 7 1323 210 171 0 0 chr11 96789245 96789286 -25054570 + GA-rich Low_complexity Low_complexity 2 42 0 7 1323 453 150 30 0 chr11 96789687 96789787 -25054069 + CT-rich Low_complexity Low_complexity 2 104 0 7 1323 440 224 27 11 chr11 96789823 96789935 -25053921 - PB1D10 SINE Alu -15 135 24 7 1323 205 55 26 53 chr11 96791541 96791579 -25052277 + (CCCCCA)n Simple_repeat Simple_repeat 3 39 0 7 1323 180 77 0 0 chr11 96791671 96791697 -25052159 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 7 1323 467 266 101 8 chr11 96791710 96791839 -25052017 - B1F2 SINE Alu -8 141 1 7 1323 207 0 0 0 chr11 96791868 96791891 -25051965 + (TC)n Simple_repeat Simple_repeat 1 23 0 7 1323 771 114 15 30 chr11 96791892 96792027 -25051829 - B1_Mus2 SINE Alu -1 146 14 7 1323 426 235 12 97 chr11 96792027 96792039 -25051817 - ID_B1 SINE B4 -1 223 86 7 1323 486 258 39 0 chr11 96792039 96792167 -25051689 - B1_Mur2 SINE Alu -13 136 4 7 1323 426 235 12 97 chr11 96792167 96792184 -25051672 - ID SINE ID -139 85 73 7 1323 918 121 14 21 chr11 96792378 96792522 -25051334 + B1_Mur4 SINE Alu 3 145 -5 7 1323 308 83 21 0 chr11 96792525 96792573 -25051283 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1323 1221 106 0 0 chr11 96792573 96792753 -25051103 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 7 1323 258 32 0 0 chr11 96793521 96793552 -25050304 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 7 1323 216 83 0 94 chr11 96793666 96793678 -25050178 + (CAAA)n Simple_repeat Simple_repeat 2 13 0 7 1323 1049 44 81 0 chr11 96793678 96793814 -25050042 + B1_Mus2 SINE Alu 1 147 0 7 1323 216 83 0 94 chr11 96793814 96793854 -25050002 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1323 707 132 382 0 chr11 96793922 96794066 -25049790 + B3 SINE B2 2 200 -16 7 1323 522 0 0 0 chr11 96794066 96794124 -25049732 + (TAAAA)n Simple_repeat Simple_repeat 5 62 0 7 1323 290 286 14 0 chr11 96794135 96794205 -25049651 - ID SINE ID -149 75 5 7 1323 893 167 14 20 chr11 96794259 96794406 -25049450 - B1_Mur1 SINE Alu -2 147 2 7 1323 26 0 0 0 chr11 96794409 96794435 -25049421 + AT_rich Low_complexity Low_complexity 1 26 0 7 1323 517 306 7 7 chr11 96794435 96794583 -25049273 - RSINE1 SINE B4 -17 148 1 7 1323 301 339 74 0 chr11 96794835 96794956 -25048900 - MER91A DNA Tip100 0 196 67 7 1323 486 212 55 8 chr11 96795630 96795754 -25048102 - PB1D7 SINE Alu 0 120 1 7 1323 314 343 28 9 chr11 96797313 96797422 -25046434 + PB1D10 SINE Alu 1 111 -6 7 1323 252 0 0 0 chr11 96797570 96797598 -25046258 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1323 808 208 0 0 chr11 96798494 96798643 -25045213 - B1F SINE Alu 0 149 1 7 1323 309 246 43 52 chr11 96799837 96799953 -25043903 + B1F1 SINE Alu 1 115 -34 7 1323 404 186 170 38 chr11 96801632 96801738 -25042118 - PB1D7 SINE Alu 0 120 1 7 1323 253 306 13 101 chr11 96801784 96801926 -25041930 - L2c LINE L2 -10 3377 3220 7 1323 776 265 81 36 chr11 96802595 96802888 -25040968 + MLT1B LTR MaLR 68 448 -19 7 1323 1428 83 17 0 chr11 96803145 96803326 -25040530 + B2_Mm2 SINE B2 1 184 -11 8 1323 495 0 0 0 chr11 96803326 96803381 -25040475 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1323 193 342 0 25 chr11 96803880 96803961 -25039895 - MIR SINE MIR -21 241 163 8 1323 263 282 347 14 chr11 96804315 96804459 -25039397 - ID_B1 SINE B4 -32 192 1 8 1323 294 278 0 40 chr11 96804528 96804603 -25039253 + RSINE1 SINE B4 25 96 -69 8 1323 359 286 119 8 chr11 96804714 96804848 -25039008 - MIRb SINE MIR -83 185 37 8 1323 216 219 0 0 chr11 96806565 96806606 -25037250 + B1F SINE Alu 74 114 -35 8 1323 223 336 59 42 chr11 96806760 96806793 -25037063 + ID_B1 SINE B4 54 145 -79 8 1323 257 273 52 0 chr11 96806793 96806870 -25036986 + B1F2 SINE Alu 1 81 -68 8 1323 206 95 15 60 chr11 96806890 96806957 -25036899 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 8 1323 188 400 56 0 chr11 96807015 96807140 -25036716 - L2b LINE L2 -4 3371 3240 8 1323 1332 94 16 6 chr11 96807245 96807427 -25036429 - B2_Mm2 SINE B2 -10 185 2 8 1323 453 229 109 9 chr11 96807740 96807850 -25036006 + PB1 SINE Alu 4 124 -3 8 1323 236 296 0 0 chr11 96807872 96807953 -25035903 + ID4 SINE ID 1 81 -2 8 1323 304 225 65 43 chr11 96808389 96808482 -25035374 - L1MEg LINE L1 -4125 1959 1865 8 1323 725 206 7 33 chr11 96808483 96808634 -25035222 - B1_Mur2 SINE Alu -1 148 2 8 1323 414 0 0 0 chr11 96808640 96808686 -25035170 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 8 1323 480 138 0 0 chr11 96808686 96808766 -25035090 - PB1D9 SINE Alu 0 120 41 8 1323 318 179 46 103 chr11 96809698 96809785 -25034071 + B4A SINE B4 189 270 -22 8 1323 472 321 58 0 chr11 96809861 96809998 -25033858 + RSINE1 SINE B4 3 147 -18 8 1323 288 53 0 0 chr11 96809999 96810037 -25033819 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1323 182 37 0 36 chr11 96810141 96810169 -25033687 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 8 1323 583 244 30 0 chr11 96810356 96810491 -25033365 - B1F SINE Alu -10 139 1 8 1323 398 269 14 43 chr11 96810541 96810681 -25033175 - ID_B1 SINE B4 -8 216 81 8 1323 242 119 24 0 chr11 96810671 96810713 -25033143 + ORR1C2 LTR MaLR 342 384 0 8 1323 2215 243 147 6 chr11 96810717 96811355 -25032501 + MTE-int LTR MaLR 575 1302 -278 8 1323 901 98 0 8 chr11 96811399 96811532 -25032324 - B1_Mus1 SINE Alu -10 138 7 8 1323 799 282 186 0 chr11 96811538 96811839 -25032017 + MTE-int LTR MaLR 1220 1576 -4 8 1323 609 232 94 17 chr11 96811940 96812120 -25031736 + MTEb LTR MaLR 182 375 -4 8 1323 261 0 0 0 chr11 96812160 96812189 -25031667 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1323 844 205 136 5 chr11 96812192 96812383 -25031473 + B3 SINE B2 1 216 0 8 1323 243 125 0 0 chr11 96812846 96812886 -25030970 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1323 952 244 62 16 chr11 96812905 96813163 -25030693 - B4 SINE B4 -18 274 5 8 1323 739 191 101 58 chr11 96813237 96813426 -25030430 + B3A SINE B2 1 197 -1 8 1323 420 274 26 9 chr11 96816485 96816599 -25027257 + PB1D10 SINE Alu 2 117 0 8 1323 312 247 96 11 chr11 96816601 96816695 -25027161 + PB1D10 SINE Alu 1 102 -15 8 1323 198 103 0 0 chr11 96817639 96817668 -25026188 + (TCTCCC)n Simple_repeat Simple_repeat 6 34 0 8 1323 201 74 0 0 chr11 96817908 96817935 -25025921 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 8 1323 819 201 20 41 chr11 96817940 96818137 -25025719 - B2_Mm2 SINE B2 0 195 3 8 1323 446 162 279 0 chr11 96818261 96818372 -25025484 + B1_Mur4 SINE Alu 1 142 -8 8 1323 193 314 0 0 chr11 96818544 96818595 -25025261 + MIRc SINE MIR 165 215 -53 8 1323 915 225 63 0 chr11 96819379 96819570 -25024286 + B3 SINE B2 1 203 -13 8 1323 486 146 0 0 chr11 96819587 96819669 -25024187 + (TA)n Simple_repeat Simple_repeat 1 82 0 8 1323 253 241 60 0 chr11 96819689 96819772 -25024084 + L1MC4 LINE L1 7243 7330 -712 8 1323 246 105 0 0 chr11 96819775 96819813 -25024043 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1323 333 217 60 0 chr11 96819987 96820070 -25023786 + L1MC4 LINE L1 7486 7573 -469 8 1323 331 181 40 53 chr11 96820094 96820170 -25023686 + ID SINE ID 1 75 -149 8 1323 617 269 73 15 chr11 96820798 96821002 -25022854 - B3 SINE B2 0 216 1 8 1323 224 254 18 0 chr11 96821032 96821087 -25022769 - PB1D7 SINE Alu -64 56 1 8 1323 297 216 21 74 chr11 96821273 96821288 -25022568 + B4A SINE B4 78 87 -205 8 1323 519 176 11 0 chr11 96821288 96821379 -25022477 + B1_Mus1 SINE Alu 1 92 -56 8 1323 253 253 89 0 chr11 96821576 96821655 -25022201 + L1MA4 LINE L1 5853 5938 -362 8 1323 335 287 45 18 chr11 96821765 96821875 -25021981 + B1F SINE Alu 15 127 -22 8 1323 300 27 0 0 chr11 96823429 96823466 -25020390 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1323 685 209 138 41 chr11 96823893 96824088 -25019768 - B3 SINE B2 -1 215 2 8 1323 1049 72 65 0 chr11 96824097 96824235 -25019621 - B1_Mus2 SINE Alu 0 147 1 8 1323 890 243 29 58 chr11 96824235 96824475 -25019381 - B4A SINE B4 -59 233 1 8 1323 36 0 0 0 chr11 96824823 96824859 -25018997 + AT_rich Low_complexity Low_complexity 1 36 0 8 1323 883 201 191 0 chr11 96825336 96825525 -25018331 + URR1B DNA MER1_type 1 225 0 8 1323 251 266 15 15 chr11 96825689 96825754 -25018102 + MER2B DNA MER2_type 2 66 -270 8 1323 410 252 48 24 chr11 96825759 96825885 -25017971 + MER2B DNA MER2_type 181 309 -27 8 1323 450 215 83 18 chr11 96825922 96826031 -25017825 - PB1D10 SINE Alu 0 117 2 8 1323 769 202 42 42 chr11 96826056 96826247 -25017609 + B3 SINE B2 26 216 0 8 1323 583 181 11 6 chr11 96826260 96826400 -25017456 + B1_Mur2 SINE Alu 2 149 0 8 1323 1153 48 7 33 chr11 96827200 96827351 -25016505 - B1_Mus1 SINE Alu 0 148 2 8 1323 233 361 161 18 chr11 96827646 96827863 -25015993 + L3 LINE CR1 4210 4457 -32 8 1323 1578 32 26 5 chr11 96828008 96828199 -25015657 + B2_Mm2 SINE B2 1 195 0 8 1323 1089 189 33 9 chr11 96828413 96828627 -25015229 + URR1A DNA MER1_type 8 226 0 8 1323 287 282 26 0 chr11 96829109 96829187 -25014669 - ID4 SINE ID 0 83 4 8 1323 486 248 67 17 chr11 96829313 96829432 -25014424 - RSINE1 SINE B4 -32 133 9 8 1323 468 301 24 66 chr11 96831731 96831898 -25011958 - RSINE1 SINE B4 -4 161 2 8 1323 409 242 100 0 chr11 96831935 96832055 -25011801 + Tigger5 DNA MER2_type 2137 2268 -138 8 1323 734 228 0 0 chr11 96832052 96832197 -25011659 - ID_B1 SINE B4 0 224 80 8 1323 830 133 94 0 chr11 96832269 96832397 -25011459 + B1_Mur4 SINE Alu 2 141 -9 8 1323 194 0 0 37 chr11 96832397 96832424 -25011432 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1323 628 341 206 19 chr11 96832466 96833340 -25010516 + L2a LINE L2 1902 2938 -481 8 1323 291 313 179 37 chr11 96833352 96833704 -25010152 + L2a LINE L2 3025 3426 0 8 1323 294 277 69 0 chr11 96833755 96833856 -25010000 + ID_B1 SINE B4 2 109 -115 8 1323 599 114 19 9 chr11 96834171 96834277 -25009579 + B2_Mm2 SINE B2 89 195 0 8 1323 200 184 0 0 chr11 96835321 96835359 -25008497 + C-rich Low_complexity Low_complexity 1 38 0 8 1323 567 246 65 0 chr11 96835693 96835831 -25008025 - B1F SINE Alu -1 148 2 8 1323 1078 44 66 0 chr11 96836479 96836616 -25007240 - B1_Mm SINE Alu 0 147 2 8 1323 352 281 83 0 chr11 96836782 96836878 -25006978 - RSINE1 SINE B4 -61 104 1 8 1323 361 341 8 23 chr11 96837206 96837338 -25006518 + B1F1 SINE Alu 1 130 -19 8 1323 895 146 28 0 chr11 96840424 96840568 -25003288 + B1_Mus1 SINE Alu 1 148 0 8 1323 225 0 0 0 chr11 96840570 96840595 -25003261 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1323 297 241 234 70 chr11 96840749 96840946 -25002910 + B4A SINE B4 1 211 -81 8 1323 483 48 0 0 chr11 96841062 96841124 -25002732 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1323 245 257 27 13 chr11 96841373 96841448 -25002408 - ID4 SINE ID -1 82 7 8 1323 550 212 26 9 chr11 96841855 96841969 -25001887 - PB1D10 SINE Alu -1 116 1 8 1323 691 158 63 0 chr11 96842059 96842186 -25001670 - B1_Mur4 SINE Alu 0 150 16 8 1323 262 313 55 0 chr11 96842234 96842327 -25001529 - ID2 SINE ID -54 98 2 8 1323 300 327 87 0 chr11 96842396 96842500 -25001356 - ID_B1 SINE B4 -91 133 21 8 1323 245 276 87 32 chr11 96844522 96844687 -24999169 - MIRb SINE MIR -5 263 68 8 1323 698 245 125 0 chr11 96845143 96845327 -24998529 - B4A SINE B4 -85 207 1 8 1323 648 143 0 9 chr11 96845478 96845584 -24998272 + B3 SINE B2 1 105 -111 8 1323 185 0 40 0 chr11 96845629 96845654 -24998202 + (CATA)n Simple_repeat Simple_repeat 3 28 0 8 1323 344 239 62 27 chr11 96848507 96848619 -24995237 - PB1D7 SINE Alu -1 119 4 8 1323 199 29 56 28 chr11 96848642 96848678 -24995178 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 8 1323 785 172 28 0 chr11 96848678 96848814 -24995042 - B1_Mur4 SINE Alu -8 142 3 8 1323 912 162 7 7 chr11 96850227 96850376 -24993480 + B1_Mur4 SINE Alu 1 149 -1 8 1323 928 102 7 7 chr11 96850388 96850536 -24993320 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 8 1323 1092 216 14 0 chr11 96850557 96850765 -24993091 + B3 SINE B2 1 211 -5 8 1323 1012 153 0 0 chr11 96851850 96852000 -24991856 - B1_Mur4 SINE Alu 0 150 1 8 1323 25 0 0 0 chr11 96852015 96852040 -24991816 + AT_rich Low_complexity Low_complexity 1 25 0 9 1323 1581 27 0 31 chr11 96852040 96852231 -24991625 + B2_Mm1a SINE B2 2 186 -7 9 1323 186 43 0 0 chr11 96852238 96852261 -24991595 + (TTA)n Simple_repeat Simple_repeat 3 25 0 9 1323 262 313 15 0 chr11 96852262 96852329 -24991527 - ID4 SINE ID -13 70 3 9 1323 311 197 14 27 chr11 96852387 96852460 -24991396 - B4 SINE B4 -209 83 12 9 1323 706 243 17 23 chr11 96852465 96852638 -24991218 - B4A SINE B4 -14 278 107 9 1323 217 169 17 17 chr11 96853221 96853281 -24990575 + GA-rich Low_complexity Low_complexity 1 60 0 9 1323 180 111 0 0 chr11 96854517 96854544 -24989312 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 9 1323 235 220 16 33 chr11 96855106 96855167 -24988689 + MIRm SINE MIR 202 261 -15 9 1323 1183 68 0 0 chr11 96855190 96855336 -24988520 - B1_Mm SINE Alu 0 147 2 9 1323 604 260 124 28 chr11 96855347 96855525 -24988331 - B3A SINE B2 -3 195 1 9 1323 251 311 40 0 chr11 96855535 96855609 -24988247 - PB1D10 SINE Alu -7 110 34 9 1323 389 66 0 16 chr11 96856653 96856715 -24987141 + (GGA)n Simple_repeat Simple_repeat 2 62 0 9 1323 870 262 5 10 chr11 96857302 96857506 -24986350 - B3 SINE B2 -3 213 11 9 1323 332 261 11 22 chr11 96857503 96857593 -24986263 - PB1D7 SINE Alu -27 93 5 9 1323 271 297 22 11 chr11 96857536 96857628 -24986228 - ID_B1 SINE B4 -81 143 51 9 1323 234 342 43 26 chr11 96857786 96857903 -24985953 - MIR3 SINE MIR -78 130 12 9 1323 209 276 0 0 chr11 96857975 96858033 -24985823 + MIRc SINE MIR 84 141 -127 9 1323 324 0 0 0 chr11 96859037 96859073 -24984783 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1323 21 0 0 0 chr11 96859293 96859314 -24984542 + GC_rich Low_complexity Low_complexity 1 21 0 9 1323 282 29 0 0 chr11 96859435 96859470 -24984386 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1323 189 0 0 0 chr11 96859694 96859715 -24984141 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 9 1323 595 202 0 0 chr11 96859717 96859816 -24984040 - PB1D9 SINE Alu -17 103 5 9 1323 828 110 272 0 chr11 96859836 96859972 -24983884 - B2_Mm1t SINE B2 -18 175 3 9 1323 616 281 53 2 chr11 96861093 96861264 -24982592 + ID_B1 SINE B4 33 209 -15 9 1323 612 274 52 26 chr11 96861297 96861488 -24982368 + B3 SINE B2 9 204 -12 9 1323 1165 65 0 0 chr11 96861503 96861642 -24982214 - B1_Mus1 SINE Alu -5 143 5 9 1323 250 294 0 0 chr11 96861771 96861839 -24982017 + ID4_ SINE ID 1 68 -15 9 1323 180 0 0 0 chr11 96861846 96861866 -24981990 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 1323 388 245 138 96 chr11 96861872 96862111 -24981745 - L1ME3A LINE L1 -76 6097 5849 9 1324 900 273 19 0 chr11 96866574 96866783 -24977073 + ID_B1 SINE B4 1 213 -11 9 1324 237 74 111 0 chr11 96866783 96866837 -24977019 + T-rich Low_complexity Low_complexity 2 61 0 9 1324 519 189 86 20 chr11 96866887 96867017 -24976839 + B1_Mur2 SINE Alu 15 149 0 9 1324 729 155 13 7 chr11 96867023 96867172 -24976684 + GA-rich Low_complexity Low_complexity 2 151 0 9 1324 385 244 0 79 chr11 96867193 96867282 -24976574 + ID4 SINE ID 2 83 0 9 1324 873 206 0 0 chr11 96867353 96867499 -24976357 + B1_Mus1 SINE Alu 2 147 -1 9 1324 602 138 9 0 chr11 96867499 96867608 -24976248 + (GAAA)n Simple_repeat Simple_repeat 1 110 0 9 1324 333 0 0 0 chr11 96867608 96867645 -24976211 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 9 1324 410 252 103 37 chr11 96867661 96867797 -24976059 + B1_Mm SINE Alu 3 147 0 9 1324 803 231 73 87 chr11 96867820 96868038 -24975818 + B3 SINE B2 2 216 0 9 1324 1087 51 65 0 chr11 96868046 96868184 -24975672 + B1_Mus1 SINE Alu 2 148 0 9 1324 363 23 0 0 chr11 96868211 96868255 -24975601 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1324 252 225 163 33 chr11 96868262 96868354 -24975502 + PB1D7 SINE Alu 10 113 -7 9 1324 21 0 0 0 chr11 96868354 96868375 -24975481 + AT_rich Low_complexity Low_complexity 1 21 0 9 1324 211 241 35 0 chr11 96868575 96868633 -24975223 + L2a LINE L2 3365 3424 -2 9 1324 240 35 0 0 chr11 96871385 96871414 -24972442 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 9 1324 186 43 0 0 chr11 96872025 96872048 -24971808 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 9 1324 224 175 7 22 chr11 96873074 96873128 -24970728 + MIRc SINE MIR 109 164 -104 9 1324 321 89 0 0 chr11 96873290 96873335 -24970521 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1324 567 192 0 0 chr11 96873957 96874129 -24969727 + (TG)n Simple_repeat Simple_repeat 1 172 0 9 1324 879 158 0 0 chr11 96874167 96874412 -24969444 + (TG)n Simple_repeat Simple_repeat 1 245 0 9 1324 270 0 0 0 chr11 96875244 96875274 -24968582 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1324 222 308 43 96 chr11 96875532 96875647 -24968209 + MIR SINE MIR 30 138 -70 9 1324 1126 226 9 0 chr11 96875706 96875918 -24967938 - ID_B1 SINE B4 -10 214 1 9 1324 948 48 127 0 chr11 96876066 96876192 -24967664 + B1_Mus1 SINE Alu 2 143 -5 9 1324 360 71 229 0 chr11 96876192 96876262 -24967594 + B1_Mus2 SINE Alu 62 147 0 9 1324 412 314 99 45 chr11 96876367 96876590 -24967266 + MIRb SINE MIR 18 252 -16 9 1324 1347 72 0 0 chr11 96876737 96876917 -24966939 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1324 768 152 152 0 chr11 96877438 96877596 -24966260 - URR1A DNA MER1_type 0 226 45 9 1324 181 366 106 9 chr11 96877957 96878070 -24965786 - MIRm SINE MIR -118 158 35 9 1324 278 236 61 101 chr11 96878450 96878549 -24965307 + B1F SINE Alu 22 116 -33 9 1324 351 0 0 0 chr11 96878552 96878591 -24965265 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1324 459 0 0 0 chr11 96878591 96878641 -24965215 + (GA)n Simple_repeat Simple_repeat 2 52 0 9 1324 1189 55 0 7 chr11 96878780 96878919 -24964937 + B1_Mus1 SINE Alu 1 139 -9 9 1324 262 0 0 50 chr11 96878919 96878959 -24964897 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 9 1324 273 57 0 0 chr11 96880108 96880143 -24963713 + (CTCG)n Simple_repeat Simple_repeat 2 36 0 9 1324 909 97 12 24 chr11 96881217 96881386 -24962470 + (TTCTC)n Simple_repeat Simple_repeat 2 168 0 9 1324 423 0 0 0 chr11 96881386 96881433 -24962423 + (TTC)n Simple_repeat Simple_repeat 1 47 0 9 1324 268 238 95 95 chr11 96881433 96881549 -24962307 - PB1D10 SINE Alu 0 117 2 9 1324 186 133 0 0 chr11 96881581 96881611 -24962245 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 9 1324 442 240 0 10 chr11 96881613 96881710 -24962146 - PB1D10 SINE Alu -21 96 1 9 1324 256 361 7 65 chr11 96881710 96881754 -24962102 - MT2B LTR ERVL -446 155 120 9 1324 21 0 0 0 chr11 96881940 96881961 -24961895 + GC_rich Low_complexity Low_complexity 1 21 0 9 1324 216 0 0 0 chr11 96882233 96882257 -24961599 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1324 251 218 18 0 chr11 96885244 96885299 -24958557 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1324 219 103 0 0 chr11 96887797 96887836 -24956020 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 9 1324 1246 35 0 0 chr11 96887840 96887983 -24955873 - B1_Mus1 SINE Alu -5 143 1 9 1324 530 197 24 64 chr11 96888086 96888211 -24955645 - B3 SINE B2 -9 207 88 9 1324 758 257 53 0 chr11 96888361 96888548 -24955308 - B3A SINE B2 0 198 2 9 1324 849 151 7 33 chr11 96888563 96888714 -24955142 + B1_Mus1 SINE Alu 1 147 -1 9 1324 387 0 0 0 chr11 96888768 96888811 -24955045 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1324 646 254 112 0 chr11 96888856 96889053 -24954803 - ID_B1 SINE B4 -4 220 2 9 1324 401 113 0 0 chr11 96889090 96889152 -24954704 + B1_Mus1 SINE Alu 3 64 -84 9 1324 33 25 0 0 chr11 96889157 96889197 -24954659 + AT_rich Low_complexity Low_complexity 1 40 0 9 1324 348 261 0 0 chr11 96889231 96889361 -24954495 + (CA)n Simple_repeat Simple_repeat 1 130 0 9 1324 669 270 156 35 chr11 96889761 96890018 -24953838 + B4A SINE B4 1 288 -4 9 1324 1406 80 43 0 chr11 96890154 96890341 -24953515 + B2_Mm2 SINE B2 1 195 0 9 1324 779 273 0 63 chr11 96890345 96890552 -24953304 + B3A SINE B2 1 194 -4 9 1324 624 272 122 21 chr11 96890553 96890741 -24953115 - B3 SINE B2 -7 209 3 9 1324 21 57 0 0 chr11 96890741 96890776 -24953080 + AT_rich Low_complexity Low_complexity 1 35 0 9 1324 1107 121 0 0 chr11 96890778 96890927 -24952929 + B1_Mur4 SINE Alu 2 150 0 9 1324 660 108 0 0 chr11 96892547 96892649 -24951207 - B1_Mur3 SINE Alu -2 147 46 9 1324 1233 62 0 0 chr11 96892690 96892836 -24951020 - B1_Mus1 SINE Alu 0 148 3 9 1324 865 169 48 27 chr11 96893030 96893176 -24950680 - B1_Mur1 SINE Alu 0 149 1 9 1324 237 256 97 32 chr11 96893204 96893230 -24950626 - PB1D10 SINE Alu -1 116 18 9 1324 253 224 90 0 chr11 96893230 96893297 -24950559 - ID_B1 SINE B4 -53 171 99 9 1324 258 304 165 31 chr11 96893784 96894039 -24949817 + L2c LINE L2 3078 3366 -21 9 1324 189 74 0 0 chr11 96895399 96895426 -24948430 + (TGG)n Simple_repeat Simple_repeat 3 29 0 9 1324 619 191 83 8 chr11 96895511 96895643 -24948213 + B1_Mur1 SINE Alu 7 148 -1 9 1324 195 69 0 0 chr11 96895777 96895806 -24948050 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1324 292 49 0 4 chr11 96895809 96895859 -24947997 - B1_Mus2 SINE Alu 0 149 101 9 1324 390 42 0 0 chr11 96898998 96899046 -24944810 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1324 553 248 35 28 chr11 96899046 96899187 -24944669 - RSINE1 SINE B4 -21 144 3 1 1324 1136 42 14 7 chr11 96899207 96899352 -24944504 - B1_Mus1 SINE Alu -2 146 1 1 1324 667 178 80 22 chr11 96899353 96899491 -24944365 - B1_Mur1 SINE Alu -1 148 3 1 1324 258 284 105 29 chr11 96899509 96899614 -24944242 - B1F1 SINE Alu -32 117 5 1 1324 639 195 0 17 chr11 96899772 96899892 -24943964 - PB1D9 SINE Alu -1 119 2 1 1324 246 309 72 0 chr11 96900853 96900950 -24942906 - MER5A1 DNA MER1_type -7 159 56 1 1324 457 242 0 70 chr11 96900933 96901062 -24942794 - ID_B1 SINE B4 0 224 105 1 1324 983 165 49 16 chr11 96901204 96901389 -24942467 + B2_Mm2 SINE B2 4 194 -1 1 1324 1243 34 0 20 chr11 96901391 96901541 -24942315 + B1_Mus2 SINE Alu 1 147 0 1 1324 240 163 0 0 chr11 96901554 96901597 -24942259 + A-rich Low_complexity Low_complexity 1 43 0 1 1324 1064 102 0 0 chr11 96901872 96902011 -24941845 + B1_Mus1 SINE Alu 2 140 -8 1 1324 228 35 0 0 chr11 96902011 96902040 -24941816 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1324 243 0 0 0 chr11 96902322 96902349 -24941507 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1324 273 29 0 0 chr11 96902814 96902848 -24941008 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1324 1525 63 16 0 chr11 96903529 96903719 -24940137 - B2_Mm2 SINE B2 -2 193 1 1 1324 354 314 0 55 chr11 96903964 96904092 -24939764 - RSINE1 SINE B4 -41 124 4 1 1324 334 318 69 38 chr11 96904265 96904425 -24939431 - MER5A DNA MER1_type -24 165 1 1 1324 379 312 48 48 chr11 96904751 96904896 -24938960 - B1F1 SINE Alu -2 147 3 1 1324 856 252 23 19 chr11 96904903 96905117 -24938739 - B3 SINE B2 -1 215 1 1 1324 489 233 231 32 chr11 96905462 96905648 -24938208 + ID_B1 SINE B4 2 224 0 1 1324 311 335 31 88 chr11 96906174 96906367 -24937489 - B4 SINE B4 -84 208 27 1 1324 926 64 152 0 chr11 96906588 96906713 -24937143 - B1_Mm SINE Alu -3 144 1 1 1324 376 263 0 75 chr11 96906800 96906907 -24936949 + ID_B1 SINE B4 81 179 -45 1 1324 650 241 14 7 chr11 96906942 96907084 -24936772 + B1F1 SINE Alu 1 143 -6 1 1324 676 201 207 0 chr11 96907096 96907265 -24936591 + B3 SINE B2 1 204 -12 1 1324 1080 122 77 6 chr11 96907289 96907470 -24936386 + B2_Mm2 SINE B2 2 195 0 1 1324 243 276 13 13 chr11 96907523 96907600 -24936256 - RSINE1 SINE B4 -87 78 2 1 1324 350 211 0 14 chr11 96907818 96907890 -24935966 - PB1D10 SINE Alu -21 96 26 1 1324 1231 48 0 13 chr11 96907903 96908052 -24935804 + B1_Mus1 SINE Alu 2 148 0 1 1324 23 0 0 0 chr11 96910274 96910297 -24933559 + AT_rich Low_complexity Low_complexity 1 23 0 1 1324 681 219 90 75 chr11 96910303 96910345 -24933511 - B3 SINE B2 0 216 187 1 1324 1321 57 45 11 chr11 96910345 96910524 -24933332 + B2_Mm2 SINE B2 1 185 -10 1 1324 681 219 90 75 chr11 96910524 96910693 -24933163 - B3 SINE B2 -30 186 2 1 1324 267 31 0 0 chr11 96912725 96912757 -24931099 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1324 213 302 16 0 chr11 96913059 96913122 -24930734 + MIRm SINE MIR 117 180 -96 1 1324 363 312 91 61 chr11 96914274 96914472 -24929384 + MER2 DNA MER2_type 1 204 -141 1 1324 1631 36 0 20 chr11 96914473 96914670 -24929186 + B2_Mm1a SINE B2 1 193 0 1 1324 1276 101 32 11 chr11 96914688 96914878 -24928978 + B2_Mm2 SINE B2 2 195 0 1 1324 185 260 0 76 chr11 96914921 96915000 -24928856 - L3 LINE CR1 -3702 787 715 1 1324 486 0 0 0 chr11 96918131 96918185 -24925671 + (GGTTG)n Simple_repeat Simple_repeat 5 58 0 1 1324 297 308 0 0 chr11 96918185 96918263 -24925593 - ID4_ SINE ID -5 78 1 1 1324 328 242 0 124 chr11 96918357 96918470 -24925386 + MT2B LTR ERVL 166 264 -337 1 1324 890 102 0 0 chr11 96918376 96918504 -24925352 + B1_Mus1 SINE Alu 20 147 -1 1 1324 1437 53 37 0 chr11 96918506 96918693 -24925163 + B2_Mm2 SINE B2 2 195 0 1 1324 1162 70 0 0 chr11 96918701 96918843 -24925013 + B1_Mus1 SINE Alu 1 142 -6 1 1324 372 43 0 0 chr11 96918845 96918891 -24924965 + (GAAA)n Simple_repeat Simple_repeat 1 46 0 1 1324 1201 62 0 0 chr11 96918891 96919037 -24924819 + B1_Mus2 SINE Alu 2 147 0 1 1324 210 150 0 0 chr11 96919037 96919077 -24924779 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1324 375 291 89 59 chr11 96919083 96919218 -24924638 + RMER30 DNA MER1_type 63 201 -1 1 1324 247 237 34 0 chr11 96919326 96919385 -24924471 + MIR SINE MIR 112 172 -90 1 1324 1127 62 7 27 chr11 96919423 96919572 -24924284 + B1_Mus2 SINE Alu 2 147 0 1 1324 649 268 33 27 chr11 96920839 96921023 -24922833 + ID_B1 SINE B4 2 186 -38 1 1324 636 200 30 8 chr11 96923135 96923266 -24920590 + B1_Mur3 SINE Alu 6 139 -10 1 1324 1185 43 189 0 chr11 96923337 96923501 -24920355 - B2_Mm2 SINE B2 0 195 1 1 1324 218 143 13 160 chr11 96923644 96923719 -24920137 + B3A SINE B2 12 75 -123 1 1324 473 291 11 117 chr11 96923664 96923843 -24920013 - B3 SINE B2 -53 163 4 1 1324 315 0 0 0 chr11 96923867 96923902 -24919954 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1324 228 35 0 0 chr11 96923904 96923933 -24919923 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 1 1324 218 297 40 13 chr11 96923938 96924013 -24919843 - B3A SINE B2 -34 164 88 1 1324 210 370 0 0 chr11 96924064 96924137 -24919719 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 1 1324 485 263 156 31 chr11 96924148 96924278 -24919578 + B3 SINE B2 1 149 -67 1 1324 318 50 0 0 chr11 96924278 96924318 -24919538 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1324 485 263 156 31 chr11 96924318 96924379 -24919477 + B3 SINE B2 150 216 0 1 1324 432 148 173 0 chr11 96924501 96924582 -24919274 - PB1D9 SINE Alu -6 114 20 1 1324 516 281 91 5 chr11 96924740 96924955 -24918901 - L1ME2 LINE L1 -241 5921 5689 1 1324 1018 229 9 27 chr11 96925324 96925544 -24918312 - B3 SINE B2 0 216 1 1 1324 968 226 5 35 chr11 96925558 96925760 -24918096 - B3A SINE B2 -1 197 2 1 1324 534 285 7 62 chr11 96925796 96925942 -24917914 - RSINE1 SINE B4 0 165 28 1 1324 1144 83 7 0 chr11 96925980 96926125 -24917731 + B1_Mus2 SINE Alu 1 146 -1 1 1324 1444 46 40 0 chr11 96926136 96926310 -24917546 - B2_Mm2 SINE B2 -14 181 1 1 1324 235 299 0 102 chr11 96927390 96927498 -24916358 - Charlie9 DNA MER1_type -1 2756 2660 1 1324 975 136 0 7 chr11 96927599 96927747 -24916109 + B1_Mus2 SINE Alu 1 147 0 1 1324 600 193 0 73 chr11 96927834 96927957 -24915899 + PB1D9 SINE Alu 2 115 -5 1 1324 311 230 13 51 chr11 96930322 96930400 -24913456 + ID4_ SINE ID 1 75 -8 1 1324 1078 108 0 26 chr11 96930467 96930619 -24913237 + B1_Mur3 SINE Alu 1 148 -1 1 1324 180 0 0 0 chr11 96930706 96930726 -24913130 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1324 357 82 0 0 chr11 96931024 96931073 -24912783 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1324 654 286 110 45 chr11 96931078 96931237 -24912619 - B4 SINE B4 0 292 127 1 1324 1692 156 76 7 chr11 96931237 96931541 -24912315 + ORR1A3 LTR MaLR 1 325 -1 1 1324 654 286 110 45 chr11 96931541 96931645 -24912211 - B4 SINE B4 -166 126 12 1 1324 286 135 54 0 chr11 96931646 96931720 -24912136 + (TCTG)n Simple_repeat Simple_repeat 4 81 0 1 1324 418 210 60 80 chr11 96931728 96931878 -24911978 - B1F SINE Alu -2 147 1 1 1324 185 65 0 31 chr11 96931928 96931960 -24911896 + (CCCCCA)n Simple_repeat Simple_repeat 2 32 0 1 1324 673 257 20 14 chr11 96932099 96932245 -24911611 - B1F SINE Alu 0 149 3 1 1324 1385 54 42 21 chr11 96932306 96932496 -24911360 - B2_Mm2 SINE B2 0 195 2 1 1324 269 100 140 0 chr11 96932496 96932546 -24911310 - PB1D10 SINE Alu -13 104 48 1 1324 231 120 98 20 chr11 96932503 96932554 -24911302 - ID_B1 SINE B4 -48 176 122 1 1324 478 229 0 35 chr11 96933120 96933233 -24910623 - PB1D7 SINE Alu -7 113 5 1 1324 243 0 0 0 chr11 96934007 96934034 -24909822 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1324 1048 85 124 24 chr11 96934719 96934888 -24908968 + B2_Mm2 SINE B2 1 186 -9 1 1324 1196 29 14 0 chr11 96934899 96935039 -24908817 + B1_Mm SINE Alu 2 143 -4 1 1324 1429 62 17 0 chr11 96935313 96935490 -24908366 - B2_Mm2 SINE B2 -14 181 2 1 1324 291 54 0 0 chr11 96935840 96935877 -24907979 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 1 1324 645 204 8 34 chr11 96935899 96936016 -24907840 - PB1D9 SINE Alu -5 115 2 1 1324 222 336 17 83 chr11 96936020 96936140 -24907716 - PB1D10 SINE Alu -1 116 5 1 1324 238 314 46 28 chr11 96936037 96936145 -24907711 - ID_B1 SINE B4 -34 190 81 1 1324 3303 40 8 5 chr11 96936152 96936551 -24907305 - MTB LTR MaLR 0 400 1 1 1324 285 174 58 173 chr11 96936724 96936828 -24907028 - PB1D10 SINE Alu -6 111 20 1 1324 745 289 77 0 chr11 96937061 96937269 -24906587 + ID_B1 SINE B4 1 224 0 1 1324 439 234 15 88 chr11 96937475 96937611 -24906245 + B3A SINE B2 57 182 -16 1 1324 207 0 0 0 chr11 96937690 96937713 -24906143 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1324 994 90 30 0 chr11 96937713 96937846 -24906010 - B1_Mus1 SINE Alu -9 139 3 1 1324 292 282 12 71 chr11 96937857 96937941 -24905915 - ID4 SINE ID -2 81 3 1 1324 1360 96 27 0 chr11 96937955 96938143 -24905713 - B2_Mm1t SINE B2 0 193 1 1 1324 230 0 33 0 chr11 96938171 96938201 -24905655 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1324 1121 79 0 0 chr11 96938201 96938340 -24905516 - B1_Mus1 SINE Alu -9 139 1 1 1324 843 127 73 15 chr11 96938363 96938499 -24905357 - B1_Mus2 SINE Alu -1 146 3 1 1324 3232 164 158 69 chr11 96938551 96939233 -24904623 + RMER19B LTR ERVK 1 761 -141 1 1324 186 43 0 0 chr11 96939233 96939256 -24904600 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1324 1631 17 0 0 chr11 96939256 96939433 -24904423 - B2_Mm1a SINE B2 -16 177 1 1 1324 3232 164 158 69 chr11 96939433 96939561 -24904295 + RMER19B LTR ERVK 762 883 -19 1 1324 1516 62 0 25 chr11 96939561 96939759 -24904097 + B2_Mm1t SINE B2 1 193 0 1 1324 401 299 35 43 chr11 96939860 96940091 -24903765 - L1M5 LINE L1 -3195 2951 2723 1 1324 236 147 18 0 chr11 96940737 96940782 -24903074 - PB1D9 SINE Alu -99 50 2 1 1324 566 203 44 15 chr11 96940886 96941021 -24902835 - B1F SINE Alu -1 148 10 1 1324 410 289 19 56 chr11 96940887 96941048 -24902808 - ID_B1 SINE B4 0 224 70 1 1324 451 185 0 12 chr11 96941057 96941139 -24902717 + ID_B1 SINE B4 135 215 -9 1 1324 219 69 0 0 chr11 96941139 96941168 -24902688 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 1324 823 201 37 0 chr11 96941169 96941333 -24902523 + B3A SINE B2 10 179 -19 1 1324 360 0 0 0 chr11 96941334 96941374 -24902482 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1324 1146 213 15 93 chr11 96941791 96941945 -24901911 - RLTR20C LTR ERVK 0 534 372 1 1324 1306 67 66 11 chr11 96941945 96942126 -24901730 - B2_Mm2 SINE B2 -3 192 2 1 1324 1146 243 30 96 chr11 96942126 96942338 -24901518 - RLTR20C LTR ERVK -144 390 143 1 1324 1197 263 74 84 chr11 96942482 96942682 -24901174 + RMER15 LTR ERVL 1 395 -180 1 1324 2058 99 0 0 chr11 96942682 96942974 -24900882 + ORR1A2 LTR MaLR 36 327 0 1 1324 1197 263 74 84 chr11 96942974 96943063 -24900793 + RMER15 LTR ERVL 396 575 0 1 1324 248 211 26 78 chr11 96943555 96943632 -24900224 + RMER1A Other Other 30 102 -928 1 1324 226 326 0 73 chr11 96944605 96944701 -24899155 - MIR SINE MIR -94 168 80 1 1324 460 252 18 0 chr11 96945929 96946040 -24897816 + PB1D10 SINE Alu 5 117 0 1 1324 256 170 57 0 chr11 96946252 96946305 -24897551 - RLTR11B LTR ERVK -397 56 1 1 1324 450 0 0 0 chr11 96946700 96946750 -24897106 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1324 1700 31 0 0 chr11 96946803 96946995 -24896861 - B2_Mm1a SINE B2 0 193 2 1 1324 1035 65 50 7 chr11 96947000 96947140 -24896716 - B1_Mm SINE Alu 0 147 2 1 1324 250 301 62 47 chr11 96947298 96947427 -24896429 + MLT1J LTR MaLR 25 155 -357 1 1324 737 139 49 0 chr11 96947471 96947593 -24896263 - B1_Mur4 SINE Alu -21 129 2 1 1324 692 316 16 0 chr11 96947649 96947836 -24896020 - B3 SINE B2 -26 190 1 1 1324 443 267 26 83 chr11 96947866 96948058 -24895798 - B3A SINE B2 -16 182 2 1 1324 807 186 57 0 chr11 96948093 96948233 -24895623 - B1_Mur1 SINE Alu 0 149 2 1 1324 288 291 49 49 chr11 96948358 96948481 -24895375 - MLT1A1 LTR MaLR -2 406 284 1 1324 388 361 10 77 chr11 96948805 96949000 -24894856 - B4A SINE B4 -109 183 2 1 1324 333 0 0 0 chr11 96949003 96949040 -24894816 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1324 733 193 49 28 chr11 96949041 96949185 -24894671 + B1_Mur1 SINE Alu 2 148 -1 1 1324 514 260 116 58 chr11 96949240 96949351 -24894505 - RSINE1 SINE B4 0 165 54 1 1324 4614 53 0 31 chr11 96949351 96949933 -24893923 - LTRIS2 LTR ERV1 0 564 1 1 1324 514 260 116 58 chr11 96949933 96949976 -24893880 - RSINE1 SINE B4 -112 53 2 1 1324 252 0 0 0 chr11 96950028 96950056 -24893800 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1324 640 208 8 0 chr11 96950070 96950190 -24893666 - B1_Mus2 SINE Alu -25 122 2 1 1324 413 244 0 108 chr11 96950077 96950206 -24893650 - MT2B LTR ERVL -334 267 153 1 1324 524 243 14 146 chr11 96950221 96950433 -24893423 - B3 SINE B2 0 216 33 1 1324 306 217 58 0 chr11 96950920 96950989 -24892867 + ID4_ SINE ID 1 73 -10 1 1324 422 173 16 0 chr11 96950994 96951121 -24892735 + (CAGA)n Simple_repeat Simple_repeat 2 130 0 1 1324 355 264 11 11 chr11 96951340 96951432 -24892424 - B1_Mur1 SINE Alu -1 148 57 1 1324 685 235 109 16 chr11 96951437 96951623 -24892233 - B3 SINE B2 -1 215 26 1 1324 1547 48 0 16 chr11 96951623 96951814 -24892042 + B2_Mm2 SINE B2 1 188 -7 1 1324 505 299 57 17 chr11 96951814 96951830 -24892026 - B3A SINE B2 -173 25 9 1 1324 539 92 0 0 chr11 96951891 96951967 -24891889 + B1_Mur4 SINE Alu 69 144 -6 1 1324 281 322 0 53 chr11 96952430 96952525 -24891331 - PB1D7 SINE Alu -11 109 20 1 1324 283 113 0 31 chr11 96952541 96952605 -24891251 + (TTTTA)n Simple_repeat Simple_repeat 1 62 0 1 1324 499 295 139 0 chr11 96952605 96952771 -24891085 + MTD LTR MaLR 14 202 -219 1 1324 549 88 0 0 chr11 96952771 96952851 -24891005 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 1324 1266 90 0 0 chr11 96952855 96953033 -24890823 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 1 1324 868 230 79 15 chr11 96953045 96953248 -24890608 + B3 SINE B2 1 216 0 1 1324 966 89 82 0 chr11 96953252 96953387 -24890469 + B1_Mus1 SINE Alu 3 148 0 1 1324 556 235 155 43 chr11 96953398 96953585 -24890271 + MTD LTR MaLR 194 401 -18 1 1324 324 236 0 0 chr11 96953852 96953924 -24889932 - ID_B1 SINE B4 -5 219 148 1 1324 425 292 84 66 chr11 96954271 96954557 -24889299 + B4 SINE B4 1 291 -1 1 1324 232 254 18 0 chr11 96954560 96954615 -24889241 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1324 411 226 24 0 chr11 96954828 96954912 -24888944 - MER63A DNA AcHobo -76 134 49 1 1324 1036 43 14 0 chr11 96955342 96955480 -24888376 + (GA)n Simple_repeat Simple_repeat 2 141 0 1 1324 619 116 142 47 chr11 96955602 96955729 -24888127 - B1_Mur4 SINE Alu -2 148 10 1 1324 237 392 64 19 chr11 96955795 96955951 -24887905 + HAL1 LINE L1 725 887 -1620 1 1324 666 140 335 52 chr11 96955962 96956135 -24887721 - URR1B DNA MER1_type -3 222 1 1 1324 395 222 0 0 chr11 96956148 96956220 -24887636 + ID2 SINE ID 1 72 -11 1 1324 1046 189 0 36 chr11 96956423 96956642 -24887214 + B3 SINE B2 6 216 0 1 1324 718 149 0 0 chr11 96956665 96956772 -24887084 + B3 SINE B2 5 111 -105 1 1324 1250 104 38 16 chr11 96956814 96956841 -24887015 - B2_Mm2 SINE B2 -4 191 160 1 1324 180 0 0 0 chr11 96956841 96956861 -24886995 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1324 1250 104 38 16 chr11 96956861 96957019 -24886837 - B2_Mm2 SINE B2 -36 159 2 1 1324 435 38 0 0 chr11 96957135 96957188 -24886668 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1324 386 304 0 0 chr11 96957377 96957479 -24886377 - PB1D10 SINE Alu -15 102 1 1 1324 676 256 6 35 chr11 96957513 96957686 -24886170 + B3A SINE B2 6 173 -25 1 1324 586 182 16 4 chr11 96957686 96957805 -24886051 + B1_Mur2 SINE Alu 1 127 0 1 1324 308 296 29 101 chr11 96957900 96958039 -24885817 - B4 SINE B4 -140 152 24 1 1324 486 0 0 0 chr11 96958051 96958105 -24885751 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1324 521 255 0 0 chr11 96958123 96958229 -24885627 + B1F SINE Alu 1 106 -43 1 1324 259 312 0 25 chr11 96958916 96958995 -24884861 + MADE2 DNA Mariner 2 78 -2 1 1324 23 0 0 0 chr11 96960693 96960716 -24883140 + AT_rich Low_complexity Low_complexity 1 23 0 1 1324 1204 77 0 29 chr11 96960727 96960902 -24882954 + B2_Mm2 SINE B2 1 170 -25 1 1324 324 94 0 0 chr11 96960903 96960956 -24882900 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1324 753 230 29 88 chr11 96961598 96961803 -24882053 - B4 SINE B4 -99 193 1 1 1324 783 225 0 0 chr11 96961861 96962003 -24881853 + RSINE1 SINE B4 2 143 -22 1 1324 180 135 0 0 chr11 96962017 96962054 -24881802 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 1 1324 296 48 24 0 chr11 96962055 96962097 -24881759 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1324 1269 85 0 0 chr11 96962097 96962273 -24881583 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 1 1324 398 213 96 0 chr11 96962584 96962678 -24881178 + ID_B1 SINE B4 73 175 -49 1 1324 201 121 0 0 chr11 96962678 96962711 -24881145 + (GGAGA)n Simple_repeat Simple_repeat 3 35 0 1 1324 1153 79 0 12 chr11 96963572 96963730 -24880126 + B2_Mm2 SINE B2 3 160 -35 1 1324 180 0 0 0 chr11 96963730 96963750 -24880106 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1324 721 206 54 8 chr11 96963801 96963953 -24879903 + B3A SINE B2 2 156 -42 1 1324 303 28 0 0 chr11 96963953 96963989 -24879867 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1324 350 286 55 72 chr11 96963989 96964005 -24879851 + B2_Mm1t SINE B2 151 168 -25 1 1324 1207 68 0 0 chr11 96964005 96964151 -24879705 - B1_Mus2 SINE Alu 0 147 2 1 1324 350 286 55 72 chr11 96964151 96964162 -24879694 + B2_Mm1t SINE B2 169 179 -14 1 1324 727 190 14 7 chr11 96964190 96964328 -24879528 + B1_Mus1 SINE Alu 10 148 0 1 1324 457 363 51 42 chr11 96964341 96964610 -24879246 + MER63B DNA AcHobo 98 376 -60 1 1324 402 174 14 0 chr11 96964610 96964679 -24879177 - ID4_ SINE ID -11 72 3 1 1324 457 363 51 42 chr11 96964679 96964745 -24879111 + MER63B DNA AcHobo 377 436 0 1 1324 290 383 11 6 chr11 96965125 96965301 -24878555 + (CCA)n Simple_repeat Simple_repeat 1 177 0 1 1324 188 35 35 0 chr11 96965325 96965354 -24878502 + (CCA)n Simple_repeat Simple_repeat 1 30 0 1 1324 263 343 24 12 chr11 96965492 96965660 -24878196 + (CACCAT)n Simple_repeat Simple_repeat 2 171 0 1 1324 643 286 65 0 chr11 96965936 96966121 -24877735 - ID_B1 SINE B4 -26 198 2 1 1324 496 223 64 92 chr11 96966221 96966394 -24877462 + B3A SINE B2 30 197 -1 1 1324 606 276 26 21 chr11 96966442 96966470 -24877386 - B2_Mm1t SINE B2 -2 191 162 1 1324 225 0 0 0 chr11 96966470 96966495 -24877361 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 1 1324 706 226 6 31 chr11 96966495 96966655 -24877201 - B2_Mm2 SINE B2 -38 157 2 1 1324 1000 155 0 0 chr11 96966661 96966803 -24877053 - B1_Mus1 SINE Alu -6 142 1 1 1324 401 0 20 0 chr11 96966810 96966859 -24876997 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 1324 1136 71 7 0 chr11 96966861 96967001 -24876855 - B1_Mus1 SINE Alu -6 142 2 1 1324 532 219 19 0 chr11 96967004 96967109 -24876747 - B1_Mur2 SINE Alu 0 149 43 1 1324 679 237 0 22 chr11 96967113 96967251 -24876605 + B1_Mur2 SINE Alu 13 147 -2 1 1324 370 183 232 0 chr11 96967254 96967336 -24876520 + B3 SINE B2 3 103 -113 1 1324 383 215 25 0 chr11 96967455 96967534 -24876322 - ID4 SINE ID -2 81 1 1 1324 519 294 62 128 chr11 96967879 96968025 -24875831 + B4 SINE B4 91 227 -65 1 1324 527 168 95 0 chr11 96968025 96968120 -24875736 + PB1D9 SINE Alu 1 104 -16 1 1324 384 104 0 0 chr11 96968123 96968190 -24875666 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 1 1324 519 294 62 128 chr11 96968190 96968250 -24875606 + B4 SINE B4 228 287 -5 1 1324 294 95 0 0 chr11 96968260 96968302 -24875554 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1324 340 124 20 0 chr11 96968501 96968568 -24875288 + B1F1 SINE Alu 50 148 -1 1 1324 935 134 203 16 chr11 96968805 96968987 -24874869 + B3 SINE B2 1 216 0 1 1324 219 235 39 0 chr11 96969005 96969056 -24874800 + ID4_ SINE ID 30 82 -1 1 1324 946 161 199 6 chr11 96969108 96969289 -24874567 + B3 SINE B2 1 216 0 1 1324 1183 68 0 13 chr11 96969320 96969469 -24874387 + B1_Mus2 SINE Alu 1 147 0 1 1324 650 224 71 47 chr11 96969478 96969647 -24874209 + B3 SINE B2 27 199 -17 1 1324 24 32 0 0 chr11 96969701 96969732 -24874124 + AT_rich Low_complexity Low_complexity 1 31 0 1 1324 445 309 71 14 chr11 96969744 96969885 -24873971 + B1F SINE Alu 1 149 0 1 1324 333 167 0 0 chr11 96969895 96969949 -24873907 + B3A SINE B2 3 56 -142 1 1324 297 0 0 0 chr11 96969961 96969994 -24873862 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1324 1254 42 0 0 chr11 96969994 96970138 -24873718 - B1_Mm SINE Alu 0 147 4 1 1324 210 257 0 13 chr11 96970267 96970342 -24873514 + A-rich Low_complexity Low_complexity 6 79 0 1 1324 297 0 0 0 chr11 96970717 96970750 -24873106 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1324 695 99 0 0 chr11 96970775 96970876 -24872980 + B1_Mus1 SINE Alu 10 110 -38 1 1324 272 208 96 14 chr11 96970992 96971065 -24872791 - RSINE1 SINE B4 -84 81 3 1 1324 360 280 142 17 chr11 96971798 96971859 -24871997 - B4 SINE B4 0 292 233 1 1324 479 60 0 15 chr11 96971859 96971927 -24871929 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 1 1324 360 280 142 17 chr11 96971927 96971985 -24871871 - B4 SINE B4 -60 232 159 1 1324 536 138 47 42 chr11 96972055 96972173 -24871683 - B1_Mur4 SINE Alu -1 149 34 1 1324 335 179 0 0 chr11 96972165 96972221 -24871635 - B4 SINE B4 -235 57 2 1 1324 283 23 0 43 chr11 96972231 96972277 -24871579 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1324 701 226 0 104 chr11 96972327 96972490 -24871366 - RSINE1 SINE B4 -18 147 2 1 1324 441 271 0 45 chr11 96972514 96972626 -24871230 + PB1D10 SINE Alu 1 107 -10 1 1324 258 324 37 81 chr11 96972705 96972866 -24870990 + B4 SINE B4 70 223 -69 1 1324 634 252 0 21 chr11 96972730 96972872 -24870984 + B1_Mur1 SINE Alu 11 149 0 1 1324 205 180 0 90 chr11 96972951 96973004 -24870852 + T-rich Low_complexity Low_complexity 19 66 0 1 1324 1027 118 28 0 chr11 96973004 96973148 -24870708 - B1_Mur3 SINE Alu 0 149 2 1 1324 205 180 0 90 chr11 96973148 96973161 -24870695 + T-rich Low_complexity Low_complexity 6 18 0 1 1324 1649 37 0 0 chr11 96973189 96973380 -24870476 + B2_Mm1a SINE B2 2 192 -1 1 1324 284 304 0 71 chr11 96973380 96973465 -24870391 + ID4_ SINE ID 1 79 -4 1 1324 461 267 8 24 chr11 96973470 96973593 -24870263 + ID_B1 SINE B4 55 175 -49 1 1324 192 40 0 0 chr11 96973693 96973718 -24870138 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1324 365 0 22 0 chr11 96975241 96975286 -24868570 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1324 249 33 0 0 chr11 96975288 96975318 -24868538 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1324 189 0 0 0 chr11 96975850 96975871 -24867985 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1324 180 0 0 0 chr11 96976707 96976727 -24867129 + (CCCCG)n Simple_repeat Simple_repeat 5 24 0 1 1324 930 238 48 5 chr11 96977675 96977882 -24865974 + ID_B1 SINE B4 1 216 -8 1 1324 1432 70 11 0 chr11 96977922 96978107 -24865749 + B2_Mm1a SINE B2 2 188 -5 1 1324 697 236 6 31 chr11 96978289 96978451 -24865405 - RSINE1 SINE B4 -6 159 2 1 1324 539 154 43 4 chr11 96982449 96982552 -24861304 - B1_Mur1 SINE Alu -22 128 25 1 1324 318 269 139 22 chr11 96982552 96982581 -24861275 - B4 SINE B4 -67 220 73 1 1324 444 290 0 0 chr11 96982709 96982816 -24861040 + ID_B1 SINE B4 91 197 -27 1 1324 350 276 17 162 chr11 96982816 96982874 -24860982 + B1F SINE Alu 18 149 0 1 1324 276 30 0 0 chr11 96982969 96983002 -24860854 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 1 1324 387 0 0 0 chr11 96983398 96983441 -24860415 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 1324 560 191 17 68 chr11 96983773 96983891 -24859965 + PB1D10 SINE Alu 5 116 -1 1 1324 665 306 37 23 chr11 96983899 96984113 -24859743 + B4A SINE B4 8 224 -68 1 1324 790 214 133 5 chr11 96984132 96984320 -24859536 + B3 SINE B2 2 213 -3 1 1324 486 0 0 0 chr11 96984408 96984462 -24859394 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1324 343 311 22 36 chr11 96984481 96984618 -24859238 + MIR3 SINE MIR 5 139 -69 1 1324 327 179 10 137 chr11 96986652 96986770 -24857086 - MIRc SINE MIR -103 165 58 1 1324 338 0 24 0 chr11 96986799 96986841 -24857015 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1324 495 48 0 0 chr11 96986841 96986902 -24856954 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1324 419 284 0 0 chr11 96986952 96987054 -24856802 + PB1D7 SINE Alu 2 103 -17 1 1324 22 0 0 0 chr11 96987437 96987459 -24856397 + GC_rich Low_complexity Low_complexity 1 22 0 1 1324 957 189 38 5 chr11 96987830 96988016 -24855840 + B2_Mm2 SINE B2 1 192 -3 1 1324 445 241 69 0 chr11 96988840 96988956 -24854900 - ID_B1 SINE B4 -1 223 100 1 1324 207 327 83 18 chr11 96990552 96990661 -24853195 - MIR SINE MIR -74 134 19 1 1324 324 338 7 21 chr11 96990708 96990850 -24853006 + CT-rich Low_complexity Low_complexity 3 142 0 1 1324 249 83 0 0 chr11 96991874 96991910 -24851946 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1324 450 0 0 0 chr11 96992023 96992073 -24851783 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1325 1218 14 0 0 chr11 96994941 96995081 -24848775 + (GA)n Simple_repeat Simple_repeat 2 141 0 1 1325 262 341 0 12 chr11 96996790 96996873 -24846983 - ID4 SINE ID 0 83 2 1 1325 204 284 23 45 chr11 97000356 97000533 -24843323 + (CGGG)n Simple_repeat Simple_repeat 3 175 0 1 1325 207 224 41 0 chr11 97002502 97002551 -24841305 - MIR SINE MIR -119 143 93 2 1325 441 257 83 0 chr11 97003778 97003887 -24839969 + MER94 DNA AcHobo 16 133 -1 3 1325 542 244 0 0 chr11 97004136 97004255 -24839601 + PB1D9 SINE Alu 2 120 0 4 1325 781 154 80 7 chr11 97004273 97004410 -24839446 + B1_Mur2 SINE Alu 2 148 -1 5 1325 22 0 0 0 chr11 97004412 97004434 -24839422 + AT_rich Low_complexity Low_complexity 1 22 0 6 1325 432 0 0 0 chr11 97006520 97006568 -24837288 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1325 187 267 83 62 chr11 97006967 97007063 -24836793 + MIRc SINE MIR 84 181 -87 8 1325 441 307 80 0 chr11 97008387 97008524 -24835332 + B1F SINE Alu 1 148 -1 9 1325 185 159 23 0 chr11 97008535 97008579 -24835277 + A-rich Low_complexity Low_complexity 4 48 0 1 1325 444 260 8 30 chr11 97009196 97009327 -24834529 + MIR SINE MIR 102 229 -33 1 1325 263 297 129 30 chr11 97009367 97009499 -24834357 - MIRb SINE MIR -52 216 72 1 1325 315 0 0 0 chr11 97009671 97009706 -24834150 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1325 225 0 0 0 chr11 97009899 97009924 -24833932 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1325 231 250 0 0 chr11 97011831 97011899 -24831957 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1325 280 204 21 21 chr11 97012586 97012681 -24831175 + (CCCCG)n Simple_repeat Simple_repeat 2 96 0 1 1325 22 56 0 0 chr11 97012775 97012811 -24831045 + GC_rich Low_complexity Low_complexity 1 36 0 1 1325 216 194 10 30 chr11 97012816 97012917 -24830939 + C-rich Low_complexity Low_complexity 3 101 0 1 1325 21 0 0 0 chr11 97013171 97013192 -24830664 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 278 213 132 13 chr11 97013446 97013522 -24830334 + MIR SINE MIR 29 113 -95 2 1325 860 172 0 0 chr11 97014866 97015000 -24828856 + B1_Mus1 SINE Alu 15 148 0 2 1325 292 288 0 0 chr11 97015014 97015073 -24828783 + PB1D9 SINE Alu 2 60 -60 2 1325 283 328 43 72 chr11 97015015 97015153 -24828703 + ID_B1 SINE B4 84 217 -7 2 1325 269 177 48 16 chr11 97016082 97016145 -24827711 - ID4 SINE ID -15 68 4 2 1325 328 266 14 13 chr11 97016164 97016252 -24827604 + PB1D10 SINE Alu 9 102 -212 2 1325 1339 76 38 5 chr11 97016252 97016437 -24827419 - B2_Mm2 SINE B2 -4 191 1 2 1325 811 167 30 113 chr11 97016571 97016774 -24827082 + B2_Mm2 SINE B2 8 193 -2 2 1325 774 225 75 40 chr11 97016853 97017027 -24826829 + B3 SINE B2 1 183 -33 2 1325 624 116 0 0 chr11 97017027 97017122 -24826734 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 1325 774 225 75 40 chr11 97017122 97017146 -24826710 + B3 SINE B2 184 206 -10 2 1325 1209 62 0 0 chr11 97017210 97017356 -24826500 + B1_Mm SINE Alu 2 147 0 3 1325 1292 81 41 0 chr11 97017394 97017566 -24826290 + B2_Mm2 SINE B2 2 180 -15 3 1325 183 42 0 0 chr11 97017568 97017592 -24826264 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1325 728 262 6 0 chr11 97017592 97017752 -24826104 + B3 SINE B2 54 214 -2 3 1325 891 173 0 26 chr11 97017795 97017949 -24825907 + B1_Mur4 SINE Alu 1 150 0 3 1325 897 129 8 0 chr11 97018189 97018321 -24825535 + B2_Mm2 SINE B2 1 133 -62 3 1325 318 287 30 76 chr11 97018885 97019017 -24824839 + B3 SINE B2 80 205 -11 3 1325 453 222 154 0 chr11 97019025 97019142 -24824714 - B1_Mur2 SINE Alu 0 149 15 3 1325 633 152 309 24 chr11 97019164 97019332 -24824524 - B3 SINE B2 0 216 1 3 1325 420 194 250 23 chr11 97019511 97019643 -24824213 - RSINE1 SINE B4 0 165 4 3 1325 216 234 8 32 chr11 97019781 97019844 -24824012 + MIR SINE MIR 116 183 -93 4 1325 553 155 144 25 chr11 97020080 97020205 -24823651 + B1_Mus1 SINE Alu 9 147 0 4 1325 269 304 69 69 chr11 97020085 97020244 -24823612 + MT2B2 LTR ERVL 177 335 -249 4 1325 421 290 46 107 chr11 97024162 97024359 -24819497 + B4 SINE B4 14 198 -94 4 1325 538 270 21 21 chr11 97024257 97024397 -24819459 + B1_Mus2 SINE Alu 8 147 0 4 1325 400 211 56 37 chr11 97024972 97025080 -24818776 + PB1D10 SINE Alu 3 112 -5 4 1325 239 182 328 15 chr11 97025162 97025229 -24818627 + RSINE1 SINE B4 16 103 -62 4 1325 304 273 0 0 chr11 97027812 97027884 -24815972 + ID4_ SINE ID 10 81 -71 4 1325 238 281 48 19 chr11 97027824 97027929 -24815927 + ID_B1 SINE B4 23 130 -94 4 1325 450 269 29 0 chr11 97028002 97028106 -24815750 - B3A SINE B2 -83 115 9 4 1325 522 0 0 0 chr11 97028369 97028427 -24815429 + (TAA)n Simple_repeat Simple_repeat 2 59 0 5 1325 1259 93 49 0 chr11 97028427 97028610 -24815246 + B2_Mm2 SINE B2 2 193 -2 5 1325 204 227 23 0 chr11 97028614 97028658 -24815198 + GA-rich Low_complexity Low_complexity 3 47 0 5 1325 230 232 156 29 chr11 97029354 97029467 -24814389 + B1_Mus2 SINE Alu 1 121 -27 5 1325 993 238 25 10 chr11 97029950 97030154 -24813702 + B3 SINE B2 10 216 0 5 1325 391 202 212 0 chr11 97030768 97030867 -24812989 + PB1D9 SINE Alu 1 120 0 5 1325 918 48 153 0 chr11 97030907 97031031 -24812825 + B1_Mus2 SINE Alu 2 144 -3 5 1325 1112 36 7 14 chr11 97031380 97031521 -24812335 - B1_Mus2 SINE Alu -2 145 6 5 1325 267 267 25 0 chr11 97031420 97031540 -24812316 - ORR1B1-int LTR MaLR -755 754 632 5 1325 411 140 9 64 chr11 97031599 97031704 -24812152 + B1_Mus1 SINE Alu 4 95 -54 5 1325 373 235 0 0 chr11 97031742 97031810 -24812046 + B3A SINE B2 58 125 -73 6 1325 373 264 48 32 chr11 97031839 97031964 -24811892 - MER68 LTR ERVL -228 335 209 6 1325 247 81 0 26 chr11 97032027 97032065 -24811791 + B1F SINE Alu 111 147 -2 5 1325 466 264 165 19 chr11 97032095 97032253 -24811603 + B3 SINE B2 28 208 -8 6 1325 250 180 0 129 chr11 97032348 97032418 -24811438 + 4.5SRNA scRNA scRNA 26 86 -8 6 1325 649 164 19 0 chr11 97032367 97032471 -24811385 + B1_Mur4 SINE Alu 42 147 -3 6 1325 323 301 79 50 chr11 97033091 97033231 -24810625 + B1F2 SINE Alu 4 147 -2 6 1325 285 330 11 11 chr11 97033582 97033677 -24810179 + ID_B1 SINE B4 91 185 -39 6 1325 333 0 0 0 chr11 97033693 97033730 -24810126 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1325 995 60 98 0 chr11 97034643 97034776 -24809080 - B1_Mus2 SINE Alu 0 147 2 6 1325 302 294 55 0 chr11 97035003 97035112 -24808744 + PB1D7 SINE Alu 3 117 -3 6 1325 526 254 210 0 chr11 97035117 97035298 -24808558 + ID_B1 SINE B4 6 224 0 7 1325 342 284 43 8 chr11 97035401 97035518 -24808338 + B3 SINE B2 96 216 0 7 1325 772 117 16 8 chr11 97035740 97035861 -24807995 + B1_Mur4 SINE Alu 22 143 -7 7 1325 1102 96 7 0 chr11 97035870 97036016 -24807840 + B1_Mus2 SINE Alu 1 147 0 7 1325 485 186 47 0 chr11 97036123 97036209 -24807647 + B1_Mur4 SINE Alu 61 150 0 7 1325 329 287 64 0 chr11 97036423 97036517 -24807339 - PB1D10 SINE Alu -4 113 14 7 1325 701 221 70 29 chr11 97036435 97036607 -24807249 - ID_B1 SINE B4 -45 179 1 7 1325 497 287 119 7 chr11 97037385 97037536 -24806320 + ID_B1 SINE B4 3 170 -54 7 1325 356 318 120 82 chr11 97037573 97037649 -24806207 + B4 SINE B4 4 80 -212 7 1325 425 217 123 0 chr11 97037649 97037755 -24806101 + PB1D9 SINE Alu 2 120 0 7 1325 356 318 120 82 chr11 97037755 97037893 -24805963 + B4 SINE B4 81 221 -71 7 1325 1427 47 12 0 chr11 97037893 97038051 -24805805 + B2_Mm1a SINE B2 2 159 -34 8 1325 207 0 0 0 chr11 97038051 97038074 -24805782 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 8 1325 1427 47 12 0 chr11 97038074 97038086 -24805770 + B2_Mm1a SINE B2 160 173 -20 8 1325 356 318 120 82 chr11 97038086 97038137 -24805719 + B4 SINE B4 222 280 -12 7 1325 356 67 0 0 chr11 97038735 97038780 -24805076 + B1_Mus1 SINE Alu 1 45 -103 8 1325 1199 102 28 0 chr11 97038833 97039009 -24804847 + B2_Mm2 SINE B2 15 195 0 8 1325 503 165 36 72 chr11 97039115 97039226 -24804630 + B1_Mur3 SINE Alu 30 136 -13 8 1325 264 296 94 77 chr11 97039122 97039356 -24804500 + MT2B LTR ERVL 194 431 -170 8 1325 531 236 118 31 chr11 97039313 97039440 -24804416 + B1F SINE Alu 11 148 -1 8 1325 281 157 3 0 chr11 97040726 97040771 -24803085 + B1_Mus2 SINE Alu 3 48 -69 8 1325 641 270 82 80 chr11 97040913 97041148 -24802708 + L1MB2 LINE L1 5613 5866 -305 8 1325 221 0 35 0 chr11 97041148 97041177 -24802679 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1325 641 270 82 80 chr11 97041177 97041199 -24802657 + L1MB2 LINE L1 5867 5883 -288 8 1325 444 275 12 53 chr11 97041199 97041368 -24802488 + RSINE1 SINE B4 4 165 0 9 1325 641 270 82 80 chr11 97041368 97041548 -24802308 + L1MB2 LINE L1 5884 6052 -119 8 1325 294 266 89 0 chr11 97042400 97042479 -24801377 + PB1D10 SINE Alu 32 117 0 9 1325 1156 74 0 0 chr11 97042643 97042791 -24801065 + B1_Mus1 SINE Alu 1 148 0 9 1325 226 150 0 48 chr11 97044251 97044293 -24799563 + PB1D7 SINE Alu 73 112 -8 9 1325 640 258 58 68 chr11 97044547 97044738 -24799118 + B3A SINE B2 3 191 -7 9 1325 594 209 132 0 chr11 97044744 97044873 -24798983 + B1_Mur2 SINE Alu 1 146 -3 9 1325 342 194 60 0 chr11 97045428 97045495 -24798361 + PB1D9 SINE Alu 30 100 -20 9 1325 439 304 59 0 chr11 97045658 97045793 -24798063 + B3A SINE B2 30 172 -26 9 1325 286 331 108 46 chr11 97045829 97045959 -24797897 + ID_B1 SINE B4 80 217 -7 9 1325 780 114 0 26 chr11 97047066 97047183 -24796673 + B1_Mm SINE Alu 24 137 -10 9 1325 258 156 0 0 chr11 97047196 97047241 -24796615 + A-rich Low_complexity Low_complexity 1 45 0 1 1325 243 269 0 71 chr11 97048555 97048695 -24795161 + (CGGGG)n Simple_repeat Simple_repeat 3 132 0 1 1325 254 182 0 18 chr11 97048967 97049023 -24794833 + G-rich Low_complexity Low_complexity 1 55 0 1 1325 286 190 0 60 chr11 97049195 97049279 -24794577 + GA-rich Low_complexity Low_complexity 2 80 0 1 1325 284 269 43 77 chr11 97049930 97050047 -24793809 - MIR3 SINE MIR -34 174 62 1 1325 894 111 0 16 chr11 97050720 97050848 -24793008 - B1_Mus2 SINE Alu -12 135 10 1 1325 410 212 0 139 chr11 97050745 97050860 -24792996 - MT2B LTR ERVL -337 264 166 1 1325 373 284 147 0 chr11 97050928 97051037 -24792819 - B1F SINE Alu 0 149 25 1 1325 394 249 63 96 chr11 97051124 97051186 -24792670 + MT2B LTR ERVL 97 168 -416 1 1325 1360 76 32 0 chr11 97051186 97051371 -24792485 + B2_Mm1a SINE B2 3 193 0 1 1325 590 108 13 10 chr11 97051372 97051469 -24792387 + B1_Mus2 SINE Alu 1 107 -20 1 1325 259 145 324 28 chr11 97051705 97051776 -24792080 + ID_B1 SINE B4 124 215 -9 1 1325 801 187 15 0 chr11 97051781 97051915 -24791941 + B3 SINE B2 1 136 -80 1 1325 1623 36 0 10 chr11 97051934 97052129 -24791727 + B2_Mm1t SINE B2 1 193 0 1 1325 697 217 0 8 chr11 97052634 97052764 -24791092 - B3 SINE B2 -86 130 2 1 1325 269 179 1090 0 chr11 97053079 97053179 -24790677 + B3 SINE B2 2 79 -137 1 1325 224 324 139 60 chr11 97053319 97053470 -24790386 - B4A SINE B4 -103 189 27 1 1325 194 161 0 0 chr11 97053774 97053805 -24790051 - L2a LINE L2 -23 3403 3373 1 1325 182 209 139 0 chr11 97053781 97053824 -24790032 - MIRm SINE MIR -28 248 200 1 1325 1152 95 83 11 chr11 97053987 97054168 -24789688 + B2_Mm2 SINE B2 2 195 0 1 1325 235 305 0 17 chr11 97054216 97054276 -24789580 + B1F SINE Alu 41 99 -50 1 1325 1184 43 0 0 chr11 97054333 97054472 -24789384 + B1_Mus1 SINE Alu 1 139 -9 1 1325 292 352 64 0 chr11 97054488 97054613 -24789243 + B4A SINE B4 20 152 -140 1 1325 1290 72 44 6 chr11 97054659 97054841 -24789015 + B2_Mm2 SINE B2 1 189 -6 1 1325 890 157 57 0 chr11 97054855 97054995 -24788861 + B1_Mur4 SINE Alu 3 150 0 1 1325 653 280 28 14 chr11 97055027 97055172 -24788684 + RSINE1 SINE B4 6 152 -13 1 1325 22 35 0 0 chr11 97055193 97055222 -24788634 + AT_rich Low_complexity Low_complexity 1 29 0 1 1325 982 176 134 0 chr11 97055253 97055440 -24788416 + B3 SINE B2 5 216 0 1 1325 746 256 121 44 chr11 97055578 97055827 -24788029 + B4A SINE B4 6 273 -19 1 1325 351 0 0 0 chr11 97055863 97055902 -24787954 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1325 336 268 99 30 chr11 97055913 97056044 -24787812 + B1F1 SINE Alu 1 140 -9 1 1325 238 277 179 0 chr11 97056533 97056645 -24787211 + B1F SINE Alu 1 132 -17 1 1325 546 16 0 0 chr11 97057012 97057075 -24786781 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 1325 954 54 0 8 chr11 97057075 97057206 -24786650 - B1_Mus1 SINE Alu -12 136 7 1 1325 373 241 8 94 chr11 97057108 97057236 -24786620 - MT2B LTR ERVL -344 257 141 1 1325 1461 47 0 0 chr11 97057292 97057591 -24786265 + (GAA)n Simple_repeat Simple_repeat 1 299 0 1 1325 834 216 0 0 chr11 97057772 97057920 -24785936 + B1F2 SINE Alu 1 148 -1 1 1325 320 246 45 30 chr11 97058286 97058420 -24785436 + B1F1 SINE Alu 9 144 -5 1 1325 432 256 171 38 chr11 97058433 97058591 -24785265 + B3A SINE B2 2 180 -18 1 1325 1158 83 12 0 chr11 97058872 97059040 -24784816 + B2_Mm1t SINE B2 1 170 -23 1 1325 346 91 358 0 chr11 97059076 97059185 -24784671 + B2_Mm2 SINE B2 47 194 -1 1 1325 423 0 0 0 chr11 97059789 97059836 -24784020 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1 1325 1238 77 59 0 chr11 97059836 97060005 -24783851 - B2_Mm2 SINE B2 -16 179 1 1 1325 596 224 45 13 chr11 97060033 97060187 -24783669 - B3 SINE B2 -1 215 57 1 1325 420 317 32 53 chr11 97060659 97060849 -24783007 - B3 SINE B2 -30 186 1 1 1325 366 230 14 0 chr11 97060865 97060939 -24782917 - B1_Mur2 SINE Alu -50 99 25 1 1325 624 208 70 23 chr11 97061155 97061283 -24782573 + B1_Mur1 SINE Alu 2 135 -14 1 1325 261 0 0 0 chr11 97061286 97061315 -24782541 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1325 240 59 0 0 chr11 97061653 97061687 -24782169 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1325 1256 38 0 0 chr11 97061687 97061847 -24782009 - B2_Mm1t SINE B2 -33 160 1 1 1325 227 152 0 21 chr11 97062507 97062554 -24781302 + GA-rich Low_complexity Low_complexity 3 48 0 1 1325 449 151 52 41 chr11 97062632 97062729 -24781127 + PB1D9 SINE Alu 22 119 -1 1 1325 1524 43 32 0 chr11 97062787 97062974 -24780882 + B2_Mm2 SINE B2 3 195 0 1 1325 261 119 0 0 chr11 97062977 97063019 -24780837 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1 1325 338 254 0 0 chr11 97063029 97063096 -24780760 - ID4_ SINE ID -16 67 1 1 1325 210 303 78 39 chr11 97063213 97063316 -24780540 - PB1D10 SINE Alu -5 112 6 1 1325 550 238 63 44 chr11 97063241 97063399 -24780457 - ID_B1 SINE B4 -61 163 3 1 1325 1591 37 0 10 chr11 97063763 97063956 -24779900 + B2_Mm1a SINE B2 1 191 -2 1 1325 907 123 0 7 chr11 97063974 97064121 -24779735 + B2_Mm2 SINE B2 48 193 -2 1 1325 609 195 16 24 chr11 97064210 97064336 -24779520 + B1_Mus1 SINE Alu 1 125 -23 1 1325 185 0 0 39 chr11 97064336 97064362 -24779494 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1325 796 104 16 0 chr11 97064424 97064549 -24779307 + B1_Mur2 SINE Alu 23 149 0 1 1325 255 256 87 22 chr11 97064764 97064856 -24779000 - MTEb LTR MaLR -51 328 231 1 1325 234 331 85 0 chr11 97064917 97065047 -24778809 - LTR33 LTR ERVL -4 511 371 1 1325 1660 42 0 0 chr11 97065214 97065407 -24778449 - B2_Mm1a SINE B2 0 193 1 1 1325 767 89 8 54 chr11 97065419 97065549 -24778307 + B1_Mus2 SINE Alu 24 147 0 1 1325 184 54 53 26 chr11 97065740 97065763 -24778093 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 1 1325 1185 68 0 0 chr11 97065763 97065910 -24777946 - B1_Mm SINE Alu 0 147 1 1 1325 184 54 53 26 chr11 97065910 97065924 -24777932 + (TTTTTG)n Simple_repeat Simple_repeat 4 17 0 1 1325 348 270 0 0 chr11 97066101 97066190 -24777666 - PB1D10 SINE Alu -8 109 21 1 1325 564 96 64 0 chr11 97066236 97066330 -24777526 - B1_Mur3 SINE Alu -7 142 43 1 1325 676 98 214 0 chr11 97066364 97066476 -24777380 - B1_Mus1 SINE Alu -12 136 1 1 1325 441 54 0 0 chr11 97066510 97066566 -24777290 + (CCA)n Simple_repeat Simple_repeat 2 57 0 1 1325 271 325 36 67 chr11 97066573 97066594 -24777262 + B4 SINE B4 70 224 -63 1 1325 550 246 29 7 chr11 97066594 97066733 -24777123 + B1F SINE Alu 7 148 -1 1 1325 430 316 44 25 chr11 97066735 97066894 -24776962 + RSINE1 SINE B4 2 163 -2 1 1325 718 128 17 8 chr11 97066962 97067080 -24776776 - PB1D9 SINE Alu 0 120 2 1 1325 24 0 0 0 chr11 97067186 97067210 -24776646 + AT_rich Low_complexity Low_complexity 1 24 0 1 1325 183 42 0 0 chr11 97067769 97067793 -24776063 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1325 254 0 83 0 chr11 97068207 97068243 -24775613 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1325 33 25 0 0 chr11 97069003 97069043 -24774813 + AT_rich Low_complexity Low_complexity 1 40 0 1 1325 275 228 53 0 chr11 97069340 97069397 -24774459 - B3 SINE B2 -93 123 64 1 1325 851 139 0 49 chr11 97069432 97069576 -24774280 - B1_Mus1 SINE Alu -11 137 1 1 1325 1102 66 0 0 chr11 97069600 97069737 -24774119 - B1_Mus1 SINE Alu -11 137 1 1 1325 243 276 92 0 chr11 97069812 97069888 -24773968 - B3A SINE B2 -115 83 1 1 1325 484 242 58 8 chr11 97069924 97070045 -24773811 - RSINE1 SINE B4 -36 129 3 1 1325 578 214 327 1 chr11 97070350 97070610 -24773246 + ORR1C2 LTR MaLR 50 383 -1 1 1325 356 65 0 46 chr11 97070925 97070990 -24772866 + (A)n Simple_repeat Simple_repeat 1 62 0 1 1325 1005 68 116 0 chr11 97071448 97071595 -24772261 + B2_Mm2 SINE B2 1 164 -31 1 1325 333 254 109 0 chr11 97071804 97071914 -24771942 - B1_Mus1 SINE Alu -14 134 13 1 1325 943 167 112 34 chr11 97071948 97072153 -24771703 - URR1B DNA MER1_type -4 221 1 1 1325 459 279 14 49 chr11 97072204 97072347 -24771509 + B1F SINE Alu 1 138 -11 1 1325 429 154 140 21 chr11 97072780 97072873 -24770983 - B1_Mur3 SINE Alu 0 149 46 1 1325 727 241 54 29 chr11 97073215 97073420 -24770436 + B3 SINE B2 1 210 -6 1 1325 230 116 23 0 chr11 97073451 97073494 -24770362 + (GGA)n Simple_repeat Simple_repeat 2 45 0 1 1325 206 244 44 0 chr11 97073497 97073542 -24770314 + polypurine Low_complexity Low_complexity 4 50 0 1 1325 332 340 0 0 chr11 97073930 97074036 -24769820 - B1F SINE Alu -43 106 1 1 1325 846 200 47 5 chr11 97074085 97074276 -24769580 + URR1A DNA MER1_type 28 226 0 1 1325 231 200 20 0 chr11 97074702 97074752 -24769104 + RSINE1 SINE B4 41 91 -74 1 1325 312 272 94 14 chr11 97074909 97074920 -24768936 - B4A SINE B4 -58 234 164 1 1325 465 195 144 0 chr11 97074920 97075038 -24768818 - B1_Mur2 SINE Alu -6 143 9 1 1325 396 204 50 30 chr11 97075648 97075749 -24768107 + ID_B1 SINE B4 121 223 -1 2 1325 502 289 124 28 chr11 97075842 97076091 -24767765 - B4A SINE B4 -18 274 2 2 1325 1039 227 0 18 chr11 97076113 97076333 -24767523 + B3 SINE B2 1 216 0 2 1325 221 245 0 0 chr11 97076359 97076408 -24767448 - B1_Mur1 SINE Alu -5 144 96 2 1325 1115 107 16 27 chr11 97076417 97076600 -24767256 - B2_Mm2 SINE B2 -9 186 6 2 1325 736 244 76 0 chr11 97076611 97076808 -24767048 - B3 SINE B2 0 216 5 2 1325 569 279 7 7 chr11 97076827 97076968 -24766888 - ID_B1 SINE B4 -3 221 81 2 1325 1550 53 11 0 chr11 97077271 97077461 -24766395 - B2_Mm1a SINE B2 0 193 2 2 1325 261 102 28 28 chr11 97077490 97077517 -24766339 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1325 1221 41 7 0 chr11 97077517 97077662 -24766194 + B1_Mus1 SINE Alu 2 147 -1 2 1325 261 102 28 28 chr11 97077662 97077705 -24766151 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 2 1325 718 134 75 52 chr11 97077801 97077935 -24765921 - B1_Mus2 SINE Alu -10 137 1 2 1325 739 196 147 45 chr11 97077977 97078175 -24765681 + URR1B DNA MER1_type 1 218 -7 2 1325 271 277 14 78 chr11 97078267 97078408 -24765448 + ID_B1 SINE B4 93 224 0 2 1325 1179 68 0 0 chr11 97078436 97078582 -24765274 + B1_Mus2 SINE Alu 1 146 -1 2 1325 322 229 236 9 chr11 97078583 97078693 -24765163 + ID_B1 SINE B4 81 215 -9 2 1325 379 298 24 8 chr11 97078891 97079016 -24764840 - B1F SINE Alu -17 132 6 2 1325 180 0 0 0 chr11 97079414 97079434 -24764422 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 2 1325 287 215 30 15 chr11 97079727 97079739 -24764117 - ID_B1 SINE B4 -76 148 82 2 1325 341 185 0 0 chr11 97079739 97079793 -24764063 - B1_Mus2 SINE Alu -93 54 1 2 1325 1372 68 10 30 chr11 97080274 97080472 -24763384 - B2_Mm2 SINE B2 0 195 2 2 1325 187 295 61 26 chr11 97080574 97080689 -24763167 - L3 LINE CR1 -852 3637 3519 2 1325 409 206 202 18 chr11 97080750 97080859 -24762997 - B3 SINE B2 -87 129 1 2 1325 342 0 0 0 chr11 97080868 97080906 -24762950 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1325 595 197 42 7 chr11 97080963 97081106 -24762750 - B1_Mur2 SINE Alu 0 149 2 2 1325 236 176 20 0 chr11 97081712 97081763 -24762093 + L2a LINE L2 1873 1924 -1495 2 1325 262 290 149 0 chr11 97081976 97082083 -24761773 - ID_B1 SINE B4 -15 209 87 2 1325 212 337 10 0 chr11 97082225 97082326 -24761530 + L2a LINE L2 2265 2366 -1053 2 1325 668 179 7 29 chr11 97082495 97082633 -24761223 - B1_Mus1 SINE Alu -1 147 13 2 1325 1052 36 57 14 chr11 97082670 97082810 -24761046 - B1_Mm SINE Alu 0 147 2 2 1325 272 364 90 31 chr11 97083089 97083344 -24760512 + L2a LINE L2 2957 3226 -200 2 1325 1593 47 16 0 chr11 97083643 97083835 -24760021 + B2_Mm2 SINE B2 1 195 0 2 1325 1467 82 0 5 chr11 97085442 97085638 -24758218 + B2_Mm2 SINE B2 1 195 0 2 1325 185 0 0 39 chr11 97085734 97085760 -24758096 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1325 626 165 7 118 chr11 97086153 97086245 -24757611 - B1_Mur4 SINE Alu -5 145 61 2 1325 1665 26 0 20 chr11 97086245 97086442 -24757414 + B2_Mm1a SINE B2 1 193 0 2 1325 626 179 11 128 chr11 97086442 97086508 -24757348 - B1_Mur4 SINE Alu -90 60 2 2 1325 967 152 53 16 chr11 97086529 97086716 -24757140 - B2_Mm2 SINE B2 -1 194 1 2 1325 360 256 0 53 chr11 97086735 97086830 -24757026 + B1_Mur2 SINE Alu 58 147 -2 2 1325 369 160 271 0 chr11 97086993 97087091 -24756765 + B3 SINE B2 1 127 -89 2 1325 27 29 0 0 chr11 97087139 97087173 -24756683 + AT_rich Low_complexity Low_complexity 1 34 0 2 1325 21 0 0 0 chr11 97087341 97087362 -24756494 + AT_rich Low_complexity Low_complexity 1 21 0 2 1325 497 96 0 0 chr11 97087604 97087677 -24756179 - B1_Mur4 SINE Alu -23 127 55 2 1325 421 248 83 0 chr11 97087763 97087872 -24755984 - PB1D7 SINE Alu 0 120 3 2 1325 1436 62 0 11 chr11 97088674 97088852 -24755004 - B2_Mm2 SINE B2 -18 177 2 2 1325 572 186 9 17 chr11 97089417 97089532 -24754324 - B1_Mur4 SINE Alu -13 137 24 2 1325 1291 170 13 9 chr11 97089748 97089973 -24753883 + URR1A DNA MER1_type 1 226 0 2 1325 678 126 16 25 chr11 97090042 97090164 -24753692 - B1_Mus1 SINE Alu -6 142 22 2 1325 417 257 37 0 chr11 97090237 97090346 -24753510 + B3 SINE B2 97 209 -7 2 1325 336 176 0 0 chr11 97090960 97091028 -24752828 + (TAAA)n Simple_repeat Simple_repeat 3 70 0 2 1325 294 270 13 51 chr11 97091400 97091478 -24752378 + Lx8 LINE L1 7227 7301 -172 2 1325 748 258 25 20 chr11 97091625 97091823 -24752033 + B4 SINE B4 35 233 -59 2 1325 355 271 103 0 chr11 97092059 97092166 -24751690 + PB1D9 SINE Alu 3 120 0 2 1325 942 212 9 33 chr11 97092235 97092445 -24751411 + B3 SINE B2 9 213 -3 2 1325 1325 93 11 0 chr11 97092506 97092689 -24751167 - B2_Mm1t SINE B2 -8 185 1 2 1325 522 224 7 50 chr11 97092764 97092905 -24750951 - B1_Mur2 SINE Alu -13 136 2 2 1325 225 0 0 0 chr11 97093375 97093400 -24750456 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1325 1289 27 0 0 chr11 97093400 97093547 -24750309 - B1_Mm SINE Alu 0 147 1 2 1325 300 202 128 143 chr11 97093664 97093747 -24750109 + B4A SINE B4 5 85 -207 2 1325 504 256 23 15 chr11 97093747 97093878 -24749978 + B1_Mus2 SINE Alu 1 132 -15 2 1325 543 287 43 27 chr11 97093876 97094062 -24749794 + B4A SINE B4 94 282 -10 2 1325 598 274 70 5 chr11 97094305 97094492 -24749364 + B4 SINE B4 5 203 -89 2 1325 1467 69 5 0 chr11 97094520 97094708 -24749148 + B2_Mm1a SINE B2 2 190 -3 2 1325 554 293 28 17 chr11 97094729 97094906 -24748950 + B3A SINE B2 2 180 -18 2 1325 261 360 88 0 chr11 97094975 97095100 -24748756 + RSINE1 SINE B4 17 152 -13 2 1325 373 302 0 0 chr11 97095217 97095313 -24748543 + B1_Mur2 SINE Alu 2 97 -52 2 1325 596 211 8 8 chr11 97095453 97095577 -24748279 + B1_Mus2 SINE Alu 6 129 -18 2 1325 213 39 0 0 chr11 97095585 97095611 -24748245 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1325 653 36 12 0 chr11 97095624 97095708 -24748148 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 2 1325 1012 109 40 17 chr11 97096179 97096356 -24747500 + B2_Mm2 SINE B2 15 195 0 2 1325 588 216 120 52 chr11 97096648 97096818 -24747038 + ORR1D1 LTR MaLR 14 199 -175 2 1325 598 225 0 78 chr11 97096818 97096972 -24746884 + B1_Mm SINE Alu 1 142 -5 2 1325 588 216 120 52 chr11 97096972 97096992 -24746864 + ORR1D1 LTR MaLR 200 217 -157 2 1325 913 125 42 0 chr11 97097080 97097224 -24746632 - B1_Mur4 SINE Alu 0 150 1 2 1325 21 0 0 0 chr11 97097356 97097377 -24746479 + AT_rich Low_complexity Low_complexity 1 21 0 2 1325 360 152 0 0 chr11 97097793 97097859 -24745997 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1325 936 221 38 0 chr11 97097882 97098095 -24745761 + URR1A DNA MER1_type 1 221 -5 2 1325 323 295 83 37 chr11 97098157 97098266 -24745590 + PB1D10 SINE Alu 3 116 -1 2 1325 1585 38 0 0 chr11 97098268 97098452 -24745404 + B2_Mm1a SINE B2 2 185 -8 2 1325 289 0 24 24 chr11 97098454 97098496 -24745360 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1325 353 309 151 0 chr11 97098504 97098643 -24745213 + RSINE1 SINE B4 2 161 -4 2 1325 593 181 83 38 chr11 97098662 97098794 -24745062 + B1_Mus1 SINE Alu 1 138 -10 2 1325 310 128 85 49 chr11 97098876 97098958 -24744898 + RLTR25B LTR ERVK 425 509 -519 2 1325 849 36 0 0 chr11 97098891 97099001 -24744855 + B1_Mus1 SINE Alu 39 148 0 2 1325 198 0 0 0 chr11 97099194 97099216 -24744640 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1325 886 59 0 0 chr11 97099722 97099841 -24744015 - B2_Mm2 SINE B2 -76 119 1 2 1325 22 0 0 0 chr11 97100477 97100499 -24743357 + AT_rich Low_complexity Low_complexity 1 22 0 2 1325 643 142 16 55 chr11 97100787 97100914 -24742942 + B1_Mus2 SINE Alu 26 147 0 2 1325 535 145 72 9 chr11 97100930 97101041 -24742815 + B1_Mur3 SINE Alu 32 149 0 2 1325 460 192 144 0 chr11 97101165 97101269 -24742587 + B2_Mm2 SINE B2 1 119 -76 2 1325 224 290 57 14 chr11 97101875 97101945 -24741911 - ID4_ SINE ID -9 74 2 2 1325 548 124 139 8 chr11 97101996 97102118 -24741738 - B1_Mus1 SINE Alu -1 147 10 2 1325 21 57 0 0 chr11 97103155 97103190 -24740666 + AT_rich Low_complexity Low_complexity 1 35 0 2 1325 705 184 29 14 chr11 97104321 97104459 -24739397 + B1_Mur3 SINE Alu 9 148 -1 2 1325 367 238 159 32 chr11 97104476 97104602 -24739254 - B1_Mur1 SINE Alu -5 144 3 2 1325 214 123 35 0 chr11 97104728 97104785 -24739071 + T-rich Low_complexity Low_complexity 3 61 0 2 1325 1207 54 0 0 chr11 97104790 97104937 -24738919 - B1_Mus2 SINE Alu 0 147 1 2 1325 320 211 117 18 chr11 97105233 97105344 -24738512 + B1F SINE Alu 28 149 0 2 1325 1136 82 7 0 chr11 97105353 97105500 -24738356 + B1_Mus1 SINE Alu 1 148 0 2 1325 909 248 5 0 chr11 97105973 97106179 -24737677 - B3 SINE B2 -9 207 1 2 1325 239 329 0 12 chr11 97106179 97106270 -24737586 - ID4 SINE ID -58 94 5 2 1325 26 0 0 0 chr11 97106607 97106633 -24737223 + AT_rich Low_complexity Low_complexity 1 26 0 2 1325 296 310 81 0 chr11 97106851 97106938 -24736918 + B4A SINE B4 89 182 -110 2 1325 293 157 0 19 chr11 97107030 97107076 -24736780 + B3 SINE B2 3 48 -168 2 1325 570 67 0 0 chr11 97107076 97107151 -24736705 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 2 1325 549 44 0 0 chr11 97107173 97107241 -24736615 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 3 1325 855 173 126 35 chr11 97107243 97107441 -24736415 + B3 SINE B2 1 216 0 3 1325 383 214 108 58 chr11 97107625 97107764 -24736092 + B3A SINE B2 31 176 -22 2 1325 659 232 14 0 chr11 97107964 97108102 -24735754 + B1_Mur2 SINE Alu 2 141 -8 3 1325 1229 54 0 0 chr11 97108444 97108592 -24735264 + B1_Mus1 SINE Alu 1 148 0 3 1325 186 128 0 0 chr11 97108601 97108640 -24735216 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 3 1325 818 140 65 32 chr11 97108690 97108875 -24734981 + RMER17C LTR ERVK 220 410 0 3 1325 221 234 45 30 chr11 97108938 97109004 -24734852 - B1F1 SINE Alu 0 149 83 3 1325 705 158 96 15 chr11 97109337 97109472 -24734384 + B1_Mur2 SINE Alu 4 149 0 3 1325 201 276 132 0 chr11 97109976 97110064 -24733792 - MIRc SINE MIR -96 172 72 3 1325 231 278 27 40 chr11 97111061 97111136 -24732720 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 3 1325 1402 75 32 0 chr11 97111182 97111369 -24732487 + B2_Mm2 SINE B2 1 193 -2 3 1325 1364 96 11 0 chr11 97111538 97111726 -24732130 + B2_Mm1t SINE B2 2 191 -2 3 1325 486 203 117 39 chr11 97112334 97112462 -24731394 + B1_Mur1 SINE Alu 10 147 -2 3 1325 27 0 0 0 chr11 97113172 97113199 -24730657 + AT_rich Low_complexity Low_complexity 1 27 0 3 1325 1153 101 66 17 chr11 97113201 97113382 -24730474 + B2_Mm1t SINE B2 1 190 -3 3 1325 341 333 0 38 chr11 97113506 97113612 -24730244 - RSINE1 SINE B4 -61 104 3 3 1325 460 195 129 25 chr11 97113696 97113859 -24729997 + B3A SINE B2 11 190 -8 3 1325 974 98 0 20 chr11 97114079 97114225 -24729631 + B1_Mus1 SINE Alu 1 143 -5 3 1325 877 195 89 0 chr11 97114240 97114430 -24729426 + B3 SINE B2 1 207 -9 3 1325 235 279 28 42 chr11 97114607 97114678 -24729178 + ID4_ SINE ID 1 70 -13 3 1325 529 199 54 54 chr11 97114710 97114859 -24728997 + B1_Mur1 SINE Alu 1 149 0 3 1325 307 252 147 9 chr11 97114892 97115008 -24728848 + B1F2 SINE Alu 12 143 -6 3 1325 369 0 0 0 chr11 97115353 97115394 -24728462 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1325 286 103 0 0 chr11 97115412 97115451 -24728405 - RSINE1 SINE B4 -74 91 53 3 1325 215 180 80 0 chr11 97115422 97115472 -24728384 - B4 SINE B4 -212 80 27 3 1325 1586 47 0 25 chr11 97115848 97116045 -24727811 - B2_Mm1a SINE B2 0 193 2 3 1325 669 169 130 8 chr11 97116247 97116378 -24727478 - B1_Mus2 SINE Alu 0 147 1 3 1325 892 203 45 25 chr11 97116457 97116659 -24727197 + B3 SINE B2 2 207 -9 3 1325 497 248 25 88 chr11 97116674 97116833 -24727023 - B1_Mur4 SINE Alu 0 150 2 3 1325 513 273 0 0 chr11 97117029 97117139 -24726717 - B3 SINE B2 -10 206 97 3 1325 197 33 33 0 chr11 97117156 97117186 -24726670 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1325 1100 86 0 0 chr11 97117186 97117325 -24726531 - B1_Mus1 SINE Alu -9 139 1 3 1325 1610 62 0 5 chr11 97117466 97117675 -24726181 + L1Md_A LINE L1 6375 6582 0 3 1325 737 255 69 0 chr11 97117754 97117942 -24725914 + ID_B1 SINE B4 24 224 0 3 1325 769 191 21 0 chr11 97118180 97118321 -24725535 - B1_Mur4 SINE Alu -5 145 2 3 1325 197 65 0 31 chr11 97118360 97118392 -24725464 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1325 210 191 0 0 chr11 97118392 97118434 -24725422 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 1325 379 220 35 35 chr11 97118805 97118918 -24724938 - B3A SINE B2 -84 114 2 3 1325 300 276 35 6 chr11 97119824 97119917 -24723939 - B1F SINE Alu -23 127 25 3 1325 1260 108 32 5 chr11 97120098 97120284 -24723572 + B2_Mm2 SINE B2 2 192 -3 3 1325 631 251 18 35 chr11 97120300 97120486 -24723370 + B3 SINE B2 15 194 -1 3 1325 258 313 135 50 chr11 97120497 97120638 -24723218 + RSINE1 SINE B4 3 155 -10 3 1325 207 0 0 0 chr11 97120717 97120740 -24723116 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1325 1130 63 7 0 chr11 97120740 97120882 -24722974 - B1_Mus2 SINE Alu -3 144 2 3 1325 1227 61 0 0 chr11 97121000 97121148 -24722708 - B1_Mus1 SINE Alu 0 148 1 3 1325 883 119 126 0 chr11 97121287 97121438 -24722418 + B2_Mm1t SINE B2 2 171 -22 3 1325 299 108 336 26 chr11 97121527 97121640 -24722216 + B2_Mm2 SINE B2 47 194 -1 3 1325 634 63 333 0 chr11 97121662 97121773 -24722083 + B1_Mus1 SINE Alu 1 148 0 3 1325 352 207 45 9 chr11 97121790 97121902 -24721954 + L1M5 LINE L1 5385 5500 -944 3 1325 237 91 54 18 chr11 97122034 97122090 -24721766 - B2_Mm2 SINE B2 -1 194 137 3 1325 246 140 19 74 chr11 97122089 97122143 -24721713 - B3 SINE B2 -115 101 51 3 1325 672 123 153 42 chr11 97122166 97122310 -24721546 - B2_Mm1t SINE B2 -13 180 21 3 1325 1135 44 0 0 chr11 97122340 97122477 -24721379 - B1_Mus2 SINE Alu -9 138 2 3 1325 356 278 112 56 chr11 97122519 97122679 -24721177 + ID_B1 SINE B4 2 170 -54 3 1325 772 114 0 84 chr11 97122730 97122873 -24720983 - B2_Mm2 SINE B2 -64 131 1 3 1325 1495 125 65 17 chr11 97122873 97123166 -24720690 - RMER6A LTR ERVK -1 755 449 3 1325 718 261 14 154 chr11 97123179 97123327 -24720529 + L1MC1 LINE L1 5646 5795 -538 3 1325 615 171 155 0 chr11 97123327 97123456 -24720400 - B1_Mur1 SINE Alu 0 149 1 3 1325 718 261 14 154 chr11 97123456 97123528 -24720328 + L1MC1 LINE L1 5796 5824 -509 3 1325 1155 34 0 40 chr11 97123528 97123680 -24720176 - B1_Mus2 SINE Alu 0 147 2 3 1325 718 261 14 154 chr11 97123680 97123816 -24720040 + L1MC1 LINE L1 5825 5953 -380 3 1325 378 284 0 10 chr11 97123823 97123926 -24719930 + L1MC1 LINE L1 6213 6314 -19 3 1325 200 217 0 0 chr11 97124068 97124114 -24719742 + A-rich Low_complexity Low_complexity 1 46 0 3 1325 647 161 16 33 chr11 97124114 97124236 -24719620 + PB1D9 SINE Alu 1 120 0 3 1325 229 235 0 0 chr11 97124260 97124311 -24719545 + PB1D10 SINE Alu 66 116 -1 3 1326 312 234 16 0 chr11 97124499 97124563 -24719293 - ID4_ SINE ID -16 67 3 3 1326 217 273 0 0 chr11 97124627 97124682 -24719174 - RSINE1 SINE B4 -72 93 39 3 1326 249 98 0 0 chr11 97125610 97125651 -24718205 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1326 562 254 0 8 chr11 97125653 97125784 -24718072 - B1_Mur1 SINE Alu -19 130 1 3 1326 432 0 0 0 chr11 97125921 97125969 -24717887 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1326 1035 96 0 0 chr11 97126043 97126178 -24717678 + B1_Mus1 SINE Alu 1 135 -13 3 1326 981 123 0 0 chr11 97126338 97126484 -24717372 - B1_Mus1 SINE Alu 0 148 3 3 1326 766 182 24 6 chr11 97126714 97126880 -24716976 - B2_Mm2 SINE B2 0 195 27 3 1326 1044 37 0 7 chr11 97126905 97127042 -24716814 - B1_Mus1 SINE Alu 0 148 13 3 1326 2380 50 25 9 chr11 97127098 97127424 -24716432 - L1_Mus3 LINE L1 0 6638 6308 3 1326 829 155 226 0 chr11 97127530 97127698 -24716158 + B3 SINE B2 2 207 -9 3 1326 1540 32 49 0 chr11 97128098 97128283 -24715573 + B2_Mm2 SINE B2 2 195 0 3 1326 279 274 0 0 chr11 97128745 97128807 -24715049 - PB1D10 SINE Alu -54 63 2 3 1326 342 264 64 83 chr11 97129291 97129416 -24714440 + B3A SINE B2 45 167 -31 3 1326 185 65 32 0 chr11 97129416 97129447 -24714409 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1326 342 264 64 83 chr11 97129447 97129478 -24714378 + B3A SINE B2 168 198 0 3 1326 1176 112 27 27 chr11 97129495 97129679 -24714177 + B2_Mm2 SINE B2 3 186 -9 3 1326 258 337 76 35 chr11 97129712 97129884 -24713972 + MER44B DNA MER2_type 162 340 -210 3 1326 795 98 102 29 chr11 97129923 97130060 -24713796 + B1_Mus2 SINE Alu 1 147 0 3 1326 639 234 35 14 chr11 97130467 97130610 -24713246 - B1_Mur2 SINE Alu -2 147 2 3 1326 982 109 43 0 chr11 97130978 97131116 -24712740 + B1_Mus1 SINE Alu 5 148 0 3 1326 234 125 0 0 chr11 97131116 97131164 -24712692 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1326 21 0 0 0 chr11 97131193 97131214 -24712642 + AT_rich Low_complexity Low_complexity 1 21 0 3 1326 444 113 336 9 chr11 97131329 97131436 -24712420 - B2_Mm2 SINE B2 -7 188 47 3 1326 1105 76 127 0 chr11 97131466 97131624 -24712232 - B2_Mm1t SINE B2 -15 178 1 3 1326 270 0 0 0 chr11 97131674 97131704 -24712152 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1326 287 291 57 28 chr11 97131912 97132018 -24711838 + PB1D10 SINE Alu 1 109 -8 3 1326 279 238 32 0 chr11 97132035 97132098 -24711758 + RSINE1 SINE B4 12 76 -89 3 1326 347 102 17 0 chr11 97132784 97132843 -24711013 + B2_Mm2 SINE B2 2 61 -134 3 1326 1191 48 0 7 chr11 97132843 97132989 -24710867 + B1_Mm SINE Alu 3 147 0 3 1326 679 205 70 81 chr11 97133002 97133166 -24710690 + B3 SINE B2 27 199 -17 3 1326 1319 80 21 11 chr11 97133166 97133356 -24710500 + B2_Mm2 SINE B2 2 193 -2 3 1326 679 205 70 81 chr11 97133356 97133377 -24710479 + B3 SINE B2 200 210 -6 3 1326 1647 42 0 0 chr11 97133446 97133636 -24710220 + B2_Mm1a SINE B2 1 190 -3 3 1326 1194 29 0 0 chr11 97133669 97133806 -24710050 + B1_Mm SINE Alu 1 137 -10 3 1326 273 29 0 0 chr11 97133806 97133840 -24710016 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1326 23 0 0 0 chr11 97133855 97133878 -24709978 + AT_rich Low_complexity Low_complexity 1 23 0 3 1326 658 174 0 9 chr11 97133885 97134001 -24709855 + B1_Mur4 SINE Alu 2 116 -34 3 1326 21 0 0 0 chr11 97134434 97134455 -24709401 + AT_rich Low_complexity Low_complexity 1 21 0 3 1326 638 182 6 201 chr11 97134697 97134876 -24708980 - B1_Mur4 SINE Alu -5 145 2 3 1326 23 0 0 0 chr11 97134879 97134902 -24708954 + AT_rich Low_complexity Low_complexity 1 23 0 3 1326 248 227 45 15 chr11 97134918 97134985 -24708871 - ID_B1 SINE B4 -19 205 137 4 1326 1058 143 11 17 chr11 97134991 97135169 -24708687 + B2_Mm1t SINE B2 3 179 -14 4 1326 514 68 262 41 chr11 97135201 97135323 -24708533 + B2_Mm2 SINE B2 47 195 0 4 1326 883 81 0 0 chr11 97135340 97135463 -24708393 + B1_Mm SINE Alu 25 147 0 4 1326 32 0 0 0 chr11 97135463 97135495 -24708361 + AT_rich Low_complexity Low_complexity 1 32 0 4 1326 198 118 0 0 chr11 97135540 97135574 -24708282 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 4 1326 263 208 38 0 chr11 97135582 97135635 -24708221 + PB1D9 SINE Alu 2 56 -64 4 1326 736 191 29 7 chr11 97135837 97135974 -24707882 - B1_Mur2 SINE Alu -8 141 2 4 1326 252 296 264 25 chr11 97136014 97136177 -24707679 - ID_B1 SINE B4 -19 205 4 4 1326 1458 75 21 0 chr11 97136365 97136553 -24707303 + B2_Mm1a SINE B2 2 193 0 4 1326 233 284 7 121 chr11 97136784 97136924 -24706932 + Tigger15a DNA TcMar 65 188 -527 4 1326 203 178 22 0 chr11 97137443 97137488 -24706368 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 4 1326 421 231 198 33 chr11 97137493 97137614 -24706242 - B1F SINE Alu -8 141 1 4 1326 997 16 0 0 chr11 97137870 97137993 -24705863 + B1_Mm SINE Alu 25 147 0 4 1326 180 0 0 0 chr11 97138075 97138095 -24705761 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1326 278 297 98 30 chr11 97138475 97138607 -24705249 + B1F SINE Alu 1 141 -8 4 1326 804 177 20 0 chr11 97138635 97138782 -24705074 + B1_Mur4 SINE Alu 1 150 0 4 1326 593 286 6 24 chr11 97139279 97139444 -24704412 + RSINE1 SINE B4 4 165 0 4 1326 266 308 55 27 chr11 97139560 97139670 -24704186 + PB1 SINE Alu 1 113 -14 4 1326 802 123 14 28 chr11 97139729 97139871 -24703985 - B1_Mus1 SINE Alu 0 148 9 4 1326 361 204 44 97 chr11 97139773 97139887 -24703969 - MT2B LTR ERVL -341 260 153 4 1326 249 195 24 71 chr11 97141374 97141501 -24702355 + (CCCG)n Simple_repeat Simple_repeat 1 121 0 4 1326 184 111 22 22 chr11 97141688 97141734 -24702122 + GA-rich Low_complexity Low_complexity 2 47 0 4 1326 208 0 30 30 chr11 97141850 97141883 -24701973 + (CGGG)n Simple_repeat Simple_repeat 1 33 0 4 1326 191 116 0 44 chr11 97141890 97141935 -24701921 + G-rich Low_complexity Low_complexity 1 43 0 4 1326 35 88 0 0 chr11 97141936 97142027 -24701829 + GC_rich Low_complexity Low_complexity 1 91 0 4 1326 420 206 93 0 chr11 97142409 97142506 -24701350 + B1F SINE Alu 41 146 -3 4 1326 320 235 0 24 chr11 97142549 97142632 -24701224 - ID4 SINE ID -2 81 1 4 1326 532 148 130 0 chr11 97142958 97143066 -24700790 + B1_Mur4 SINE Alu 2 123 -27 4 1326 332 293 119 49 chr11 97143178 97143374 -24700482 - MIR SINE MIR -20 242 40 4 1326 21 0 0 0 chr11 97143465 97143486 -24700370 + AT_rich Low_complexity Low_complexity 1 21 0 4 1326 405 245 9 9 chr11 97143878 97143985 -24699871 - B1F SINE Alu 0 149 43 4 1326 615 266 7 0 chr11 97144071 97144214 -24699642 - B1_Mur1 SINE Alu -1 148 5 4 1326 232 191 0 0 chr11 97144252 97144299 -24699557 - B1F SINE Alu -97 52 6 4 1326 1331 81 6 0 chr11 97144559 97144732 -24699124 + B2_Mm1a SINE B2 2 175 -18 4 1326 1180 75 0 0 chr11 97144750 97144896 -24698960 + B1_Mm SINE Alu 2 147 0 4 1326 240 200 0 0 chr11 97144896 97144956 -24698900 + A-rich Low_complexity Low_complexity 1 60 0 4 1326 855 172 207 0 chr11 97145011 97145185 -24698671 + B3 SINE B2 5 214 -2 4 1326 571 108 0 0 chr11 97145210 97145293 -24698563 + B1_Mur4 SINE Alu 68 150 0 4 1326 535 290 35 0 chr11 97145310 97145455 -24698401 + RSINE1 SINE B4 2 151 -14 4 1326 316 220 104 57 chr11 97145541 97145647 -24698209 + PB1 SINE Alu 15 125 -2 4 1326 481 266 14 28 chr11 97145675 97145818 -24698038 + ID_B1 SINE B4 84 224 0 4 1326 762 152 60 15 chr11 97145825 97145959 -24697897 + B1_Mus2 SINE Alu 1 140 -7 4 1326 30 0 0 0 chr11 97145963 97145993 -24697863 + AT_rich Low_complexity Low_complexity 1 30 0 4 1326 254 256 16 0 chr11 97146725 97146798 -24697058 + PB1D9 SINE Alu 5 82 -68 4 1326 207 100 0 0 chr11 97146800 97146830 -24697026 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1326 499 220 27 9 chr11 97146841 97146951 -24696905 + RSINE1 SINE B4 10 121 -44 4 1326 396 0 0 0 chr11 97146951 97146995 -24696861 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1326 216 0 0 0 chr11 97147103 97147127 -24696729 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1326 1193 68 0 0 chr11 97147129 97147276 -24696580 - B1_Mus1 SINE Alu 0 148 2 4 1326 384 273 67 47 chr11 97147715 97147865 -24695991 + RSINE1 SINE B4 5 157 -8 4 1326 587 291 90 0 chr11 97147989 97148178 -24695678 + B3 SINE B2 1 206 -10 4 1326 543 257 53 112 chr11 97148662 97148854 -24695002 + ID_B1 SINE B4 78 257 -35 4 1326 471 113 0 0 chr11 97149067 97149138 -24694718 + (A)n Simple_repeat Simple_repeat 1 71 0 4 1326 1183 69 0 0 chr11 97149846 97149991 -24693865 - B1_Mm SINE Alu -2 145 1 4 1326 436 276 110 15 chr11 97149994 97150130 -24693726 + B3A SINE B2 34 182 -16 4 1326 414 0 0 0 chr11 97150135 97150181 -24693675 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1326 315 0 0 0 chr11 97150181 97150215 -24693641 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1326 247 262 16 32 chr11 97150237 97150300 -24693556 + ID4 SINE ID 8 69 -14 4 1326 297 0 0 0 chr11 97150527 97150560 -24693296 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1326 525 32 0 0 chr11 97151064 97151127 -24692729 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1326 392 195 0 13 chr11 97151131 97151209 -24692647 - B1_Mur1 SINE Alu 0 149 73 4 1326 333 232 22 34 chr11 97151136 97151225 -24692631 - ID_B1 SINE B4 -4 220 133 4 1326 1245 105 38 16 chr11 97151847 97152031 -24691825 + B2_Mm2 SINE B2 1 188 -7 4 1326 800 29 0 0 chr11 97152038 97152140 -24691716 + B1_Mm SINE Alu 35 136 -11 4 1326 195 42 0 0 chr11 97152141 97152165 -24691691 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1326 984 212 34 10 chr11 97152187 97152396 -24691460 - B3 SINE B2 0 216 3 4 1326 761 56 0 0 chr11 97152531 97152639 -24691217 + L1Md_A LINE L1 6475 6582 0 4 1326 1001 116 14 0 chr11 97152669 97152816 -24691040 + B1_Mur4 SINE Alu 2 150 0 4 1326 453 247 31 92 chr11 97152867 97153063 -24690793 + B3 SINE B2 29 212 -4 4 1326 592 277 17 78 chr11 97153236 97153416 -24690440 - ID_B1 SINE B4 -3 221 44 4 1326 1421 68 16 16 chr11 97153416 97153610 -24690246 - B2_Mm2 SINE B2 -1 194 1 4 1326 592 277 17 78 chr11 97153610 97153660 -24690196 - ID SINE ID -181 43 5 4 1326 1013 59 0 0 chr11 97153713 97153849 -24690007 - B1_Mus1 SINE Alu -5 143 8 4 1326 225 0 0 0 chr11 97153862 97153887 -24689969 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1326 1793 158 77 25 chr11 97154011 97154375 -24689481 - ORR1C2 LTR MaLR -1 383 1 4 1326 907 153 0 39 chr11 97154399 97154555 -24689301 + B1_Mur4 SINE Alu 1 150 0 4 1326 443 63 0 16 chr11 97154872 97154936 -24688920 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 4 1326 602 214 38 0 chr11 97154936 97155067 -24688789 - B1_Mur2 SINE Alu -13 136 1 4 1326 494 301 8 0 chr11 97155583 97155706 -24688150 - B3A SINE B2 -73 125 2 4 1326 599 264 14 27 chr11 97155706 97155854 -24688002 - B1F SINE Alu -2 147 2 4 1326 745 206 7 14 chr11 97155998 97156146 -24687710 + B1_Mur1 SINE Alu 1 147 -2 4 1326 219 234 92 15 chr11 97156184 97156249 -24687607 - RSINE1 SINE B4 -23 142 73 4 1326 398 359 52 35 chr11 97156899 97157130 -24686726 + B4A SINE B4 2 236 -56 4 1326 324 0 0 0 chr11 97157130 97157166 -24686690 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1326 306 274 0 0 chr11 97157174 97157247 -24686609 + PB1D7 SINE Alu 48 120 0 4 1326 378 0 0 0 chr11 97157269 97157311 -24686545 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1326 1272 44 0 0 chr11 97157311 97157470 -24686386 - B2_Mm1a SINE B2 -33 160 2 4 1326 829 152 8 0 chr11 97157473 97157605 -24686251 + B1_Mus2 SINE Alu 15 147 0 4 1326 22 0 0 0 chr11 97157605 97157627 -24686229 + AT_rich Low_complexity Low_complexity 1 22 0 4 1326 1291 20 0 0 chr11 97157747 97157893 -24685963 + B1_Mm SINE Alu 2 147 0 4 1326 180 0 0 0 chr11 97157893 97157913 -24685943 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1326 370 312 170 6 chr11 97157931 97158102 -24685754 - LTR16A LTR ERVL -229 222 24 4 1326 229 245 0 0 chr11 97158187 97158240 -24685616 - L1M5 LINE L1 -858 5288 5236 4 1326 1032 96 15 0 chr11 97158325 97158461 -24685395 - B1_Mur4 SINE Alu -10 140 3 4 1326 344 172 157 41 chr11 97158488 97158609 -24685247 - B3 SINE B2 -1 215 81 4 1326 292 262 48 0 chr11 97158702 97158786 -24685070 - MIR3 SINE MIR -13 195 108 4 1326 28 29 0 0 chr11 97158854 97158889 -24684967 + AT_rich Low_complexity Low_complexity 1 35 0 4 1326 593 182 129 0 chr11 97158896 97159028 -24684828 + B1_Mur4 SINE Alu 1 149 -1 4 1326 720 244 12 6 chr11 97159050 97159223 -24684633 - B3 SINE B2 -42 174 1 4 1326 210 304 0 14 chr11 97159374 97159444 -24684412 + CT-rich Low_complexity Low_complexity 2 70 0 4 1326 195 157 0 0 chr11 97159793 97159844 -24684012 + T-rich Low_complexity Low_complexity 1 51 0 4 1326 676 116 40 40 chr11 97159845 97159971 -24683885 - B1_Mur2 SINE Alu -1 148 23 5 1326 1741 16 0 0 chr11 97159991 97160183 -24683673 - B2_Mm1a SINE B2 0 193 2 5 1326 358 216 94 58 chr11 97160212 97160354 -24683502 - B3 SINE B2 -54 162 4 5 1326 378 326 0 46 chr11 97160401 97160552 -24683304 - ID_B1 SINE B4 -1 223 80 5 1326 462 226 38 0 chr11 97160650 97160756 -24683100 - PB1D10 SINE Alu -5 112 3 5 1326 808 138 52 37 chr11 97161047 97161182 -24682674 + B1_Mur4 SINE Alu 3 139 -11 5 1326 204 125 62 0 chr11 97161183 97161231 -24682625 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1326 456 231 0 41 chr11 97161231 97161353 -24682503 - PB1D10 SINE Alu 0 117 1 5 1326 387 246 8 119 chr11 97161484 97161535 -24682321 + ID_B1 SINE B4 106 151 -73 5 1326 1360 89 11 0 chr11 97161535 97161714 -24682142 + B2_Mm1t SINE B2 1 181 -12 5 1326 735 12 0 0 chr11 97161714 97161798 -24682058 + (GAA)n Simple_repeat Simple_repeat 2 85 0 5 1326 387 246 8 119 chr11 97161798 97161879 -24681977 + ID_B1 SINE B4 152 223 -1 5 1326 210 143 0 0 chr11 97161888 97161923 -24681933 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1326 687 251 78 0 chr11 97161934 97162113 -24681743 + B3 SINE B2 1 193 -23 5 1326 965 120 0 0 chr11 97162170 97162312 -24681544 + B1_Mus2 SINE Alu 6 147 0 5 1326 1125 89 0 0 chr11 97162317 97162463 -24681393 + B1_Mus2 SINE Alu 2 147 0 5 1326 252 213 0 0 chr11 97162567 97162628 -24681228 + (TTG)n Simple_repeat Simple_repeat 2 62 0 5 1326 186 133 0 0 chr11 97162626 97162656 -24681200 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1326 395 237 116 21 chr11 97163058 97163153 -24680703 - B1_Mus1 SINE Alu 0 120 16 5 1326 668 216 6 51 chr11 97163219 97163375 -24680481 + B1_Mur1 SINE Alu 1 149 0 5 1326 847 28 0 0 chr11 97164440 97164549 -24679307 + B1_Mus2 SINE Alu 38 146 -1 5 1326 719 209 36 0 chr11 97164896 97165035 -24678821 + B1_Mur1 SINE Alu 1 144 -5 5 1326 224 234 0 111 chr11 97165089 97165161 -24678695 + RSINE1 SINE B4 88 151 -14 5 1326 1242 54 0 0 chr11 97165636 97165784 -24678072 + B1_Mus1 SINE Alu 1 148 0 5 1326 222 118 0 0 chr11 97165784 97165818 -24678038 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1326 632 225 0 0 chr11 97166303 97166423 -24677433 - B1_Mur2 SINE Alu -16 133 14 5 1326 259 200 93 112 chr11 97166330 97166437 -24677419 - MT2B LTR ERVL -343 258 154 5 1326 1233 80 25 70 chr11 97166452 97166653 -24677203 - B2_Mm1t SINE B2 0 193 2 5 1326 189 0 0 0 chr11 97166818 97166839 -24677017 + (TC)n Simple_repeat Simple_repeat 1 21 0 5 1326 432 0 0 0 chr11 97166850 97166898 -24676958 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1326 337 120 65 140 chr11 97166919 97167026 -24676830 + MT2B LTR ERVL 152 250 -351 5 1326 496 174 20 39 chr11 97166941 97167043 -24676813 + PB1D9 SINE Alu 7 106 -14 5 1326 397 138 12 12 chr11 97167052 97167133 -24676723 + GA-rich Low_complexity Low_complexity 3 83 0 5 1326 295 286 27 54 chr11 97167300 97167411 -24676445 + PB1D10 SINE Alu 9 116 -1 5 1326 1493 53 21 10 chr11 97167457 97167649 -24676207 - B2_Mm2 SINE B2 0 195 2 5 1326 1119 69 0 27 chr11 97167687 97167836 -24676020 - B1_Mus2 SINE Alu 0 147 3 5 1326 180 77 0 0 chr11 97167868 97167894 -24675962 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1326 858 243 17 0 chr11 97167902 97168075 -24675781 - B3A SINE B2 -22 176 1 5 1326 791 149 21 50 chr11 97168098 97168239 -24675617 - B1_Mur4 SINE Alu -2 148 12 5 1326 240 292 59 130 chr11 97168138 97168307 -24675549 - MT2B2 LTR ERVL -320 264 108 5 1326 189 0 0 0 chr11 97168415 97168436 -24675420 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1326 411 83 0 0 chr11 97168539 97168599 -24675257 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1326 1509 84 46 42 chr11 97168630 97168867 -24674989 + RLTR23 LTR ERV1 1 238 -192 5 1326 346 250 182 72 chr11 97169317 97169353 -24674503 + L1M2 LINE L1 3068 3104 -3039 5 1326 636 193 48 48 chr11 97169353 97169500 -24674356 + B1_Mus2 SINE Alu 1 147 0 5 1326 346 250 182 72 chr11 97169500 97169606 -24674250 + L1M2 LINE L1 3105 3234 -2909 5 1326 1520 52 5 16 chr11 97169606 97169800 -24674056 + B2_Mm1a SINE B2 2 193 0 5 1326 1447 60 32 0 chr11 97169800 97169985 -24673871 + B2_Mm1t SINE B2 1 191 -2 5 1326 346 250 182 72 chr11 97169985 97170021 -24673835 + L1M2 LINE L1 3235 3267 -2876 5 1326 207 0 0 0 chr11 97170477 97170500 -24673356 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1326 189 273 18 18 chr11 97171463 97171519 -24672337 - MIR SINE MIR -115 147 92 5 1326 228 306 0 27 chr11 97171982 97172056 -24671800 - MIR SINE MIR -59 149 78 5 1326 189 0 0 0 chr11 97172518 97172539 -24671317 + (GGGTG)n Simple_repeat Simple_repeat 5 25 0 5 1326 1686 36 0 0 chr11 97173234 97173427 -24670429 + B2_Mm1a SINE B2 1 193 0 5 1326 765 152 50 21 chr11 97173776 97173917 -24669939 + B1_Mur4 SINE Alu 1 145 -5 5 1326 228 148 16 32 chr11 97173941 97174004 -24669852 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1326 1013 66 0 21 chr11 97174119 97174259 -24669597 + B1_Mus2 SINE Alu 9 145 -2 5 1326 239 0 0 31 chr11 97174259 97174291 -24669565 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1326 243 333 12 23 chr11 97174308 97174394 -24669462 - B4A SINE B4 -73 219 135 5 1326 423 97 0 0 chr11 97174431 97174449 -24669407 + (T)n Simple_repeat Simple_repeat 1 18 0 5 1326 1619 42 0 15 chr11 97174449 97174644 -24669212 - B2_Mm1a SINE B2 0 193 2 5 1326 423 97 0 0 chr11 97174644 97174697 -24669159 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1326 509 205 36 80 chr11 97174725 97174863 -24668993 - B3 SINE B2 -5 211 80 5 1326 1129 184 45 83 chr11 97174802 97175136 -24668720 - RMER10B LTR ERVL -111 331 6 5 1326 228 128 0 0 chr11 97175143 97175162 -24668694 + (TA)n Simple_repeat Simple_repeat 1 19 0 5 1326 248 53 26 0 chr11 97175162 97175200 -24668656 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1326 228 128 0 0 chr11 97175200 97175219 -24668637 + (TA)n Simple_repeat Simple_repeat 2 20 0 5 1326 1228 55 0 0 chr11 97175284 97175430 -24668426 + B1_Mm SINE Alu 2 147 0 5 1326 841 244 36 68 chr11 97175520 97175700 -24668156 - B3 SINE B2 -3 213 40 5 1326 1603 32 21 0 chr11 97175700 97175888 -24667968 - B2_Mm1a SINE B2 0 193 2 5 1326 841 244 36 68 chr11 97175888 97175927 -24667929 - B3 SINE B2 -177 39 1 5 1326 1010 92 0 7 chr11 97175953 97176096 -24667760 - B1_Mus2 SINE Alu 0 147 6 5 1326 348 325 141 15 chr11 97176319 97176525 -24667331 + MIR SINE MIR 29 260 -2 5 1326 1073 93 60 90 chr11 97178337 97178538 -24665318 + B2_Mm2 SINE B2 1 195 0 5 1326 249 33 0 0 chr11 97178780 97178810 -24665046 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1326 347 164 0 0 chr11 97178835 97178890 -24664966 - B2_Mm2 SINE B2 -94 101 47 5 1326 22 0 0 0 chr11 97178926 97178948 -24664908 + AT_rich Low_complexity Low_complexity 1 22 0 5 1326 4115 71 14 17 chr11 97178951 97179182 -24664674 + L1VL2 LINE L1 443 652 -5683 5 1326 188 35 35 0 chr11 97179182 97179211 -24664645 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 5 1326 1069 103 0 33 chr11 97179212 97179362 -24664494 + B1_Mm SINE Alu 1 145 -2 5 1326 7337 71 14 22 chr11 97179362 97180015 -24663841 + L1VL2 LINE L1 653 1294 -2321 5 1326 1477 43 49 0 chr11 97180015 97180199 -24663657 + B2_Mm1t SINE B2 1 193 0 5 1326 7337 74 9 26 chr11 97180199 97180962 -24662894 + L1VL2 LINE L1 1295 2040 -1575 5 1326 643 270 32 20 chr11 97181052 97181396 -24662460 - L1M3 LINE L1 -1465 4675 4328 5 1326 1208 62 0 0 chr11 97181416 97181562 -24662294 + B1_Mm SINE Alu 2 147 0 5 1326 1209 125 11 0 chr11 97181596 97181772 -24662084 + B2_Mm1t SINE B2 2 179 -14 5 1326 364 90 327 9 chr11 97181838 97181948 -24661908 + B2_Mm2 SINE B2 47 191 -4 5 1326 22 0 0 0 chr11 97182067 97182089 -24661767 + AT_rich Low_complexity Low_complexity 1 22 0 5 1326 1121 96 26 0 chr11 97182089 97182245 -24661611 - B2_Mm1t SINE B2 -33 160 1 5 1326 1360 81 38 0 chr11 97182361 97182547 -24661309 - B2_Mm2 SINE B2 0 195 3 5 1326 516 52 39 0 chr11 97182935 97183012 -24660844 - L1Md_F2 LINE L1 -1 6581 6502 5 1326 370 321 83 0 chr11 97183141 97183250 -24660606 - RSINE1 SINE B4 -45 120 3 5 1326 226 262 162 72 chr11 97183294 97183405 -24660451 - L3 LINE CR1 -38 4451 4331 5 1326 346 257 39 39 chr11 97183804 97183881 -24659975 - B1_Mur3 SINE Alu -69 78 2 5 1326 283 320 0 25 chr11 97183818 97183898 -24659958 - B4 SINE B4 -143 149 72 5 1326 721 242 6 106 chr11 97183928 97184067 -24659789 - B3A SINE B2 -36 162 40 5 1326 1654 32 11 0 chr11 97184067 97184257 -24659599 - B2_Mm1a SINE B2 0 193 2 5 1326 721 242 6 106 chr11 97184257 97184297 -24659559 - B3A SINE B2 -159 39 1 5 1326 382 265 3 9 chr11 97184299 97184405 -24659451 - PB1D10 SINE Alu -12 105 1 5 1326 797 156 35 7 chr11 97184447 97184458 -24659398 - B1_Mus2 SINE Alu -1 146 136 5 1326 234 0 0 0 chr11 97184458 97184484 -24659372 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1326 797 156 35 7 chr11 97184484 97184614 -24659242 - B1_Mus2 SINE Alu -12 135 2 5 1326 714 173 57 14 chr11 97184614 97184754 -24659102 - B1_Mur1 SINE Alu -2 147 1 5 1326 201 39 0 0 chr11 97184953 97184979 -24658877 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 5 1326 472 303 13 58 chr11 97184979 97185133 -24658723 - RSINE1 SINE B4 -7 158 12 5 1326 241 231 158 42 chr11 97185239 97185285 -24658571 - B4A SINE B4 -100 192 87 5 1326 304 163 0 0 chr11 97185285 97185334 -24658522 - B1_Mur4 SINE Alu -100 50 2 5 1326 720 176 87 16 chr11 97185851 97185978 -24657878 + B1_Mus2 SINE Alu 3 138 -9 5 1326 207 0 0 0 chr11 97185978 97186001 -24657855 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1326 24 0 0 0 chr11 97186162 97186186 -24657670 + AT_rich Low_complexity Low_complexity 1 24 0 6 1326 234 91 0 0 chr11 97186187 97186220 -24657636 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1326 1260 34 0 0 chr11 97186220 97186366 -24657490 - B1_Mus2 SINE Alu 0 147 2 6 1326 621 220 51 36 chr11 97186369 97186506 -24657350 - B1_Mus1 SINE Alu 0 148 10 6 1326 365 285 16 164 chr11 97186557 97186648 -24657208 - RSINE1 SINE B4 -3 162 80 6 1326 1015 184 102 0 chr11 97186648 97186844 -24657012 - B3 SINE B2 0 216 1 6 1326 365 285 16 164 chr11 97186844 97186941 -24656915 - RSINE1 SINE B4 -86 79 2 6 1326 234 0 0 0 chr11 97186989 97187015 -24656841 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1326 1381 94 39 0 chr11 97187151 97187332 -24656524 - B2_Mm2 SINE B2 -5 190 3 6 1326 228 143 0 0 chr11 97187332 97187374 -24656482 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 1326 365 330 55 0 chr11 97187436 97187545 -24656311 + B3A SINE B2 62 176 -22 6 1326 477 0 0 0 chr11 97187545 97187598 -24656258 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1326 959 266 5 19 chr11 97187637 97187848 -24656008 + B3 SINE B2 4 211 -5 6 1326 234 273 227 0 chr11 97187887 97187975 -24655881 + PB1D7 SINE Alu 1 108 -12 6 1326 1347 226 137 91 chr11 97188278 97188608 -24655248 - RLTR40 LTR ERVK -5 812 492 6 1326 243 0 0 0 chr11 97188608 97188635 -24655221 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1326 1205 36 0 0 chr11 97188635 97188772 -24655084 - B1_Mm SINE Alu -9 138 2 6 1326 1347 226 137 91 chr11 97188772 97189009 -24654847 - RLTR40 LTR ERVK -326 491 219 6 1326 728 133 72 22 chr11 97188969 97189107 -24654749 + B1_Mur3 SINE Alu 5 149 0 6 1326 319 213 177 44 chr11 97189122 97189235 -24654621 - RLTR40 LTR ERVK -602 215 88 6 1326 31 26 0 0 chr11 97189275 97189313 -24654543 + AT_rich Low_complexity Low_complexity 1 38 0 6 1326 1043 127 0 32 chr11 97189903 97190058 -24653798 + B1_Mur4 SINE Alu 1 150 0 6 1326 955 247 11 0 chr11 97190661 97190843 -24653013 - B3 SINE B2 -6 210 27 6 1326 1215 89 67 0 chr11 97190841 97191021 -24652835 - B2_Mm2 SINE B2 -1 194 3 6 1326 242 200 0 0 chr11 97191022 97191062 -24652794 - B3A SINE B2 -157 41 2 6 1326 431 206 93 29 chr11 97191104 97191244 -24652612 - B1_Mur3 SINE Alu 0 149 1 6 1326 660 145 133 25 chr11 97191325 97191445 -24652411 - B1_Mm SINE Alu -13 134 2 6 1326 265 169 0 156 chr11 97191465 97191542 -24652314 - B1F1 SINE Alu 0 117 53 6 1326 576 184 41 58 chr11 97191637 97191729 -24652127 + B1_Mur2 SINE Alu 31 127 -22 6 1326 1150 105 43 27 chr11 97191729 97191915 -24651941 - B2_Mm2 SINE B2 -5 190 2 6 1326 576 184 41 58 chr11 97191915 97191943 -24651913 + B1_Mur2 SINE Alu 128 149 0 6 1326 279 0 0 0 chr11 97192278 97192309 -24651547 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1326 191 36 36 0 chr11 97192560 97192588 -24651268 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6 1326 250 331 156 14 chr11 97192605 97192746 -24651110 - RSINE1 SINE B4 -2 163 3 6 1326 234 0 0 0 chr11 97192769 97192795 -24651061 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1326 236 269 90 0 chr11 97194581 97194648 -24649208 + ID4 SINE ID 5 77 -6 6 1326 618 301 37 28 chr11 97194672 97194887 -24648969 + ID_B1 SINE B4 3 219 -5 6 1326 666 272 4 112 chr11 97194987 97195219 -24648637 - B3 SINE B2 0 216 10 6 1326 1266 80 0 0 chr11 97200734 97200910 -24642946 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 6 1326 1349 80 16 21 chr11 97200922 97201114 -24642742 - B2_Mm1t SINE B2 0 193 3 6 1326 312 226 107 0 chr11 97201129 97201184 -24642672 - L1MDa LINE L1 -4132 2501 2446 6 1326 1159 61 0 20 chr11 97201184 97201334 -24642522 - B1_Mus1 SINE Alu 0 148 2 6 1326 312 226 107 0 chr11 97201334 97201362 -24642494 - L1MDa LINE L1 -4188 2445 2410 6 1326 388 267 41 49 chr11 97201582 97201704 -24642152 - B1_Mur4 SINE Alu 0 150 30 6 1326 250 272 56 88 chr11 97202261 97202277 -24641579 + MT2B LTR ERVL 155 166 -435 6 1326 487 211 102 34 chr11 97202277 97202395 -24641461 + B1_Mm SINE Alu 2 127 -20 6 1326 1289 99 15 20 chr11 97202414 97202609 -24641247 + B2_Mm2 SINE B2 2 195 0 6 1326 1115 90 0 0 chr11 97203024 97203169 -24640687 + B1_Mur3 SINE Alu 3 147 -2 6 1326 1648 37 11 0 chr11 97203175 97203366 -24640490 + B2_Mm1a SINE B2 1 193 0 6 1326 1239 48 0 20 chr11 97203380 97203530 -24640326 + B1_Mus1 SINE Alu 2 148 0 6 1326 308 112 44 11 chr11 97203577 97203667 -24640189 + (CAAAC)n Simple_repeat Simple_repeat 4 96 0 6 1326 666 0 0 0 chr11 97204704 97204778 -24639078 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 1326 360 0 0 0 chr11 97205646 97205686 -24638170 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1326 1321 59 12 0 chr11 97205872 97206042 -24637814 - B2_Mm2 SINE B2 -23 172 1 6 1326 3123 159 108 68 chr11 97206079 97206995 -24636861 + RMER17B LTR ERVK 1 952 -6 6 1326 681 202 0 0 chr11 97208289 97208403 -24635453 - PB1D7 SINE Alu -5 115 2 6 1326 1151 57 0 0 chr11 97208460 97208601 -24635255 - B1_Mus2 SINE Alu 0 147 7 6 1326 1050 115 42 47 chr11 97209216 97209407 -24634449 - B2_Mm2 SINE B2 -4 191 2 6 1326 1953 169 88 21 chr11 97209409 97209784 -24634072 + MTC LTR MaLR 14 413 -8 6 1326 1346 118 127 106 chr11 97210275 97210555 -24633301 - RMER15 LTR ERVL -249 326 41 6 1326 1162 82 44 0 chr11 97210555 97210713 -24633143 + B2_Mm2 SINE B2 1 165 -30 6 1326 270 0 0 0 chr11 97210714 97210744 -24633112 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1326 966 78 0 0 chr11 97211318 97211459 -24632397 + (CA)n Simple_repeat Simple_repeat 1 141 0 6 1326 303 104 0 0 chr11 97212010 97212058 -24631798 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1326 344 241 58 0 chr11 97212146 97212233 -24631623 + PB1D10 SINE Alu 14 105 -12 6 1326 207 0 0 0 chr11 97212257 97212280 -24631576 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1326 208 77 51 0 chr11 97213420 97213459 -24630397 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 6 1326 893 107 61 0 chr11 97214101 97214232 -24629624 + B1_Mur4 SINE Alu 6 144 -6 6 1326 1011 124 166 5 chr11 97214254 97214441 -24629415 - RLTR24 LTR ERV1 -240 289 73 6 1326 832 159 0 0 chr11 97214442 97214568 -24629288 + B1_Mur2 SINE Alu 17 142 -7 6 1326 671 215 37 75 chr11 97214610 97214771 -24629085 - B4A SINE B4 -4 288 134 6 1326 672 226 66 0 chr11 97214888 97215025 -24628831 - RSINE1 SINE B4 -19 146 1 6 1326 492 276 2 6 chr11 97215037 97215156 -24628700 - PB1D7 SINE Alu -23 124 8 6 1326 269 292 14 0 chr11 97215098 97215170 -24628686 - B4A SINE B4 -142 150 78 6 1326 288 295 76 65 chr11 97215212 97215397 -24628459 - B2_Mm2 SINE B2 -1 194 8 6 1326 729 268 32 0 chr11 97215247 97215404 -24628452 - RSINE1 SINE B4 -2 163 2 6 1326 643 125 8 111 chr11 97215510 97215636 -24628220 - B1_Mus2 SINE Alu 0 147 35 6 1326 298 278 0 161 chr11 97215970 97216108 -24627748 - B1F2 SINE Alu -1 116 3 6 1326 569 296 66 16 chr11 97216108 97216193 -24627663 - ID_B1 SINE B4 -130 94 1 6 1326 438 245 104 0 chr11 97216193 97216299 -24627557 - PB1D7 SINE Alu -1 119 3 6 1326 1083 105 14 104 chr11 97216331 97216517 -24627339 + B2_Mm2 SINE B2 3 169 -26 6 1326 207 0 0 0 chr11 97216517 97216540 -24627316 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1326 1083 105 14 104 chr11 97216540 97216565 -24627291 + B2_Mm2 SINE B2 170 195 0 6 1326 181 329 96 0 chr11 97216573 97216646 -24627210 - MIRm SINE MIR -140 136 57 6 1326 311 299 108 23 chr11 97216907 97217037 -24626819 - MIRc SINE MIR -14 254 114 6 1326 304 286 87 11 chr11 97217047 97217139 -24626717 - PB1D10 SINE Alu -11 106 8 6 1326 468 269 81 32 chr11 97217142 97217265 -24626591 - B1_Mur1 SINE Alu -19 130 2 6 1326 315 284 8 61 chr11 97217270 97217395 -24626461 - PB1 SINE Alu 0 127 6 6 1326 475 282 12 15 chr11 97217573 97217687 -24626169 - PB1D10 SINE Alu -196 118 1 6 1326 854 191 33 22 chr11 97217713 97217895 -24625961 - B2_Mm2 SINE B2 -11 184 1 6 1326 624 280 98 72 chr11 97217932 97218359 -24625497 + MT2A LTR ERVL 1 523 -44 6 1326 432 0 0 0 chr11 97218359 97218407 -24625449 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1326 365 229 41 109 chr11 97218407 97218449 -24625407 + MT2A LTR ERVL 524 559 -8 6 1326 298 186 40 54 chr11 97218473 97218547 -24625309 + PB1D10 SINE Alu 40 112 -5 6 1326 23 0 0 0 chr11 97218582 97218605 -24625251 + AT_rich Low_complexity Low_complexity 1 23 0 6 1326 818 151 0 0 chr11 97218609 97218728 -24625128 - B1_Mur2 SINE Alu -7 142 24 6 1326 187 31 30 30 chr11 97218818 97218851 -24625005 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 6 1326 1740 5 5 0 chr11 97218888 97219079 -24624777 + B2_Mm1a SINE B2 2 193 0 6 1326 189 0 0 0 chr11 97219079 97219100 -24624756 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1326 231 224 0 49 chr11 97219263 97219324 -24624532 + CT-rich Low_complexity Low_complexity 4 61 0 6 1326 267 303 68 68 chr11 97219565 97219682 -24624174 - L2a LINE L2 -22 3404 3288 6 1326 964 117 4 179 chr11 97219682 97219911 -24623945 - B2_Mm2 SINE B2 -6 189 1 6 1326 1356 96 27 0 chr11 97219948 97220136 -24623720 - B2_Mm1a SINE B2 0 193 1 6 1326 219 69 0 0 chr11 97220158 97220187 -24623669 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1326 1360 53 6 0 chr11 97220191 97220361 -24623495 - B2_Mm1a SINE B2 -22 171 1 6 1326 977 159 0 0 chr11 97220389 97220534 -24623322 - B1_Mur2 SINE Alu 0 149 5 6 1326 722 262 16 21 chr11 97220558 97220749 -24623107 - B3 SINE B2 0 216 27 6 1326 1152 42 152 0 chr11 97220748 97220913 -24622943 - B2_Mm2 SINE B2 0 195 6 6 1326 214 158 79 0 chr11 97220917 97220955 -24622901 - B2_Mm2 SINE B2 -154 41 1 7 1326 450 251 122 24 chr11 97220976 97221127 -24622729 - B3 SINE B2 -32 166 3 7 1326 1328 93 11 11 chr11 97221454 97221639 -24622217 + B2_Mm1t SINE B2 2 186 -7 7 1326 881 146 40 7 chr11 97221800 97221952 -24621904 + B2_Mm2 SINE B2 1 157 -38 7 1326 687 259 63 6 chr11 97222032 97222191 -24621665 - B4A SINE B4 -85 207 40 7 1326 740 118 133 8 chr11 97222226 97222346 -24621510 + B1_Mus1 SINE Alu 1 135 -13 7 1326 687 84 0 0 chr11 97222346 97222441 -24621415 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 7 1326 529 307 72 0 chr11 97222446 97222612 -24621244 + B3A SINE B2 1 178 -20 7 1326 666 330 116 5 chr11 97222620 97222882 -24620974 + MER63C DNA AcHobo 420 706 -224 7 1326 247 310 0 0 chr11 97222882 97222953 -24620903 + ID2 SINE ID 2 72 -11 7 1326 666 330 116 5 chr11 97222953 97223129 -24620727 + MER63C DNA AcHobo 707 906 -24 7 1326 204 216 57 59 chr11 97223169 97223279 -24620577 - MIR3 SINE MIR -46 162 57 7 1326 26 0 0 0 chr11 97223585 97223611 -24620245 + GC_rich Low_complexity Low_complexity 1 26 0 7 1326 33 25 0 0 chr11 97223652 97223692 -24620164 + GC_rich Low_complexity Low_complexity 1 40 0 7 1326 183 42 0 0 chr11 97223853 97223877 -24619979 + (CCG)n Simple_repeat Simple_repeat 1 24 0 7 1326 26 30 0 0 chr11 97223915 97223948 -24619908 + GC_rich Low_complexity Low_complexity 1 33 0 7 1326 188 122 0 24 chr11 97224213 97224255 -24619601 + (CCG)n Simple_repeat Simple_repeat 2 42 0 7 1326 21 0 0 0 chr11 97225883 97225904 -24617952 + AT_rich Low_complexity Low_complexity 1 21 0 7 1326 306 0 0 0 chr11 97226114 97226148 -24617708 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1326 270 0 0 0 chr11 97226148 97226177 -24617679 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1326 1103 75 0 0 chr11 97227416 97227563 -24616293 + B1_Mus1 SINE Alu 2 148 0 7 1326 500 306 13 87 chr11 97227668 97227846 -24616010 + B3A SINE B2 1 167 -26 7 1326 306 0 0 0 chr11 97227846 97227880 -24615976 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1326 253 312 89 144 chr11 97227880 97227903 -24615953 + B2_Mm1t SINE B2 168 190 -3 7 1326 399 272 128 26 chr11 97227912 97228029 -24615827 + RSINE1 SINE B4 3 131 -34 7 1326 1128 48 7 14 chr11 97228065 97228212 -24615644 - B1_Mm SINE Alu 0 147 2 7 1326 654 225 14 14 chr11 97228239 97228379 -24615477 + B1_Mur1 SINE Alu 1 140 -9 7 1326 258 143 0 0 chr11 97228967 97229016 -24614840 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1326 1136 61 0 0 chr11 97229017 97229164 -24614692 - B1_Mus2 SINE Alu 0 147 1 7 1326 520 229 66 61 chr11 97229222 97229403 -24614453 - B3A SINE B2 -16 182 1 7 1326 251 286 19 52 chr11 97229445 97229531 -24614325 - PB1 SINE Alu -226 88 2 7 1326 444 236 27 36 chr11 97229531 97229639 -24614217 - ID_B1 SINE B4 -21 203 97 7 1326 259 253 154 44 chr11 97229558 97229649 -24614207 - PB1 SINE Alu -21 106 6 7 1326 439 184 0 0 chr11 97230667 97230743 -24613113 + ID SINE ID 2 77 -147 7 1326 446 278 12 122 chr11 97230761 97230925 -24612931 + B4 SINE B4 2 147 -145 7 1326 1349 64 21 5 chr11 97230950 97231139 -24612717 - B2_Mm1t SINE B2 0 193 2 7 1326 1280 80 37 5 chr11 97231149 97231337 -24612519 - B2_Mm2 SINE B2 0 195 2 7 1326 1317 66 38 16 chr11 97231350 97231535 -24612321 - B2_Mm2 SINE B2 -4 191 3 7 1326 204 40 0 0 chr11 97232539 97232564 -24611292 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 7 1326 1496 34 0 0 chr11 97232565 97232742 -24611114 - B2_Mm1t SINE B2 -15 178 2 7 1326 379 202 80 35 chr11 97232752 97232865 -24610991 - B1_Mur4 SINE Alu -5 145 28 7 1326 298 283 33 63 chr11 97232890 97233010 -24610846 - B1F SINE Alu 0 117 1 7 1326 584 256 119 0 chr11 97233095 97233271 -24610585 + B3A SINE B2 1 197 -1 7 1326 451 302 50 0 chr11 97233306 97233445 -24610411 + ID_B1 SINE B4 79 224 0 7 1326 531 130 0 0 chr11 97233461 97233538 -24610318 - B2_Mm2 SINE B2 -116 79 3 7 1326 3275 16 26 0 chr11 97234977 97235363 -24608493 - MTA_Mm LTR MaLR 0 396 1 7 1326 525 252 44 0 chr11 97235544 97235679 -24608177 + B1F2 SINE Alu 2 142 -7 7 1326 220 365 115 0 chr11 97236115 97236211 -24607645 - ID_B1 SINE B4 -30 194 88 7 1326 1097 211 10 0 chr11 97236662 97236870 -24606986 - B3 SINE B2 -5 211 2 7 1326 26 0 0 0 chr11 97236882 97236908 -24606948 + AT_rich Low_complexity Low_complexity 1 26 0 7 1326 591 275 14 0 chr11 97236939 97237077 -24606779 - RSINE1 SINE B4 -19 146 7 7 1326 675 163 34 47 chr11 97237238 97237386 -24606470 - B1_Mus1 SINE Alu -1 147 2 7 1326 464 264 183 6 chr11 97240110 97240274 -24603582 - B3A SINE B2 -3 195 3 7 1326 362 315 72 84 chr11 97240353 97240616 -24603240 - B4A SINE B4 -1 291 32 7 1326 324 183 82 35 chr11 97240629 97240714 -24603142 - ID_B1 SINE B4 -5 219 131 7 1326 207 0 0 0 chr11 97240750 97240773 -24603083 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1326 1181 54 0 0 chr11 97240778 97240925 -24602931 - B1_Mus1 SINE Alu 0 148 2 7 1326 785 189 33 118 chr11 97240926 97241048 -24602808 + RCHARR1 DNA MER1_type 725 845 -129 7 1326 492 216 16 57 chr11 97241048 97241171 -24602685 + PB1D9 SINE Alu 3 120 0 7 1326 785 189 33 118 chr11 97241171 97241318 -24602538 + RCHARR1 DNA MER1_type 846 971 -3 7 1326 296 226 16 0 chr11 97241327 97241389 -24602467 + B1_Mur4 SINE Alu 3 65 -85 7 1326 288 170 0 0 chr11 97241417 97241470 -24602386 + GA-rich Low_complexity Low_complexity 3 55 0 7 1326 824 239 32 26 chr11 97241494 97241697 -24602159 + B3A SINE B2 17 212 -4 7 1326 1639 16 0 0 chr11 97242459 97242649 -24601207 + B2_Mm1a SINE B2 2 191 -2 7 1326 21 68 0 17 chr11 97242652 97242693 -24601163 + AT_rich Low_complexity Low_complexity 1 41 0 7 1326 1147 61 0 0 chr11 97242693 97242840 -24601016 - B1_Mus2 SINE Alu 0 147 1 7 1326 21 68 0 17 chr11 97242840 97242858 -24600998 + AT_rich Low_complexity Low_complexity 1 18 0 7 1326 311 314 38 25 chr11 97242873 97243033 -24600823 - RSINE1 SINE B4 -2 163 2 7 1326 245 257 129 117 chr11 97243056 97243219 -24600637 - MT2B2 LTR ERVL -245 339 175 7 1326 790 145 29 14 chr11 97243082 97243222 -24600634 - B1_Mur4 SINE Alu 0 150 9 7 1326 30 59 0 0 chr11 97243240 97243291 -24600565 + AT_rich Low_complexity Low_complexity 1 51 0 7 1326 324 146 0 0 chr11 97243304 97243359 -24600497 - B2_Mm2 SINE B2 -94 101 47 7 1326 1187 85 11 54 chr11 97243391 97243577 -24600279 - B2_Mm1t SINE B2 -14 179 2 7 1326 985 116 0 0 chr11 97243588 97243735 -24600121 - B1_Mus1 SINE Alu 0 148 2 7 1326 32 26 0 0 chr11 97243736 97243775 -24600081 + AT_rich Low_complexity Low_complexity 1 39 0 7 1326 684 174 98 0 chr11 97243783 97243915 -24599941 + B1_Mur4 SINE Alu 1 145 -5 7 1326 675 0 0 0 chr11 97244099 97244174 -24599682 + (CACAC)n Simple_repeat Simple_repeat 2 76 0 7 1326 407 343 0 9 chr11 97246155 97246264 -24597592 - B1F SINE Alu -40 109 2 7 1326 1168 68 0 0 chr11 97246329 97246476 -24597380 + B1_Mus2 SINE Alu 1 147 0 7 1326 276 30 0 0 chr11 97246492 97246525 -24597331 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1326 237 285 99 7 chr11 97246525 97246677 -24597179 - L1MC5 LINE L1 -503 7458 7293 7 1326 558 210 42 0 chr11 97246785 97246904 -24596952 - ID_B1 SINE B4 -3 221 98 7 1326 911 85 160 24 chr11 97247007 97247176 -24596680 + B2_Mm1t SINE B2 1 192 -1 7 1326 405 0 0 0 chr11 97247185 97247230 -24596626 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1326 374 233 27 178 chr11 97247259 97247405 -24596451 - B1_Mm SINE Alu -23 124 1 7 1326 30 0 0 0 chr11 97247416 97247446 -24596410 + AT_rich Low_complexity Low_complexity 1 30 0 7 1326 301 294 100 9 chr11 97247481 97247591 -24596265 - MTEb LTR MaLR -259 120 1 7 1326 280 319 0 31 chr11 97247593 97247690 -24596166 - MTEb-int LTR MaLR -1 1369 1276 7 1326 824 116 57 14 chr11 97247694 97247834 -24596022 - B1_Mus2 SINE Alu 0 147 2 7 1326 548 288 18 30 chr11 97247878 97248043 -24595813 - RSINE1 SINE B4 0 165 3 7 1326 1116 82 0 0 chr11 97248093 97248240 -24595616 - B1_Mus1 SINE Alu 0 148 2 7 1326 811 236 83 35 chr11 97248323 97248657 -24595199 - MTEb-int LTR MaLR -891 689 213 7 1326 812 192 0 46 chr11 97248850 97249003 -24594853 + B1_Mus2 SINE Alu 1 146 -1 7 1326 1110 97 0 0 chr11 97249003 97249158 -24594698 - B2_Mm2 SINE B2 -39 156 2 7 1326 207 0 0 0 chr11 97249510 97249533 -24594323 + (GCCTG)n Simple_repeat Simple_repeat 1 23 0 7 1326 1147 68 0 0 chr11 97249906 97250053 -24593803 + B1_Mus1 SINE Alu 2 148 0 7 1326 378 61 0 0 chr11 97250053 97250102 -24593754 + (GAA)n Simple_repeat Simple_repeat 2 50 0 7 1326 366 216 107 0 chr11 97250115 97250210 -24593646 + PB1D7 SINE Alu 3 107 -20 7 1326 274 284 0 36 chr11 97251349 97251433 -24592423 + ID4_ SINE ID 2 82 -1 7 1326 589 208 53 15 chr11 97251768 97251900 -24591956 + ID_B1 SINE B4 78 214 -10 7 1326 221 175 25 0 chr11 97251936 97251976 -24591880 + GA-rich Low_complexity Low_complexity 2 42 0 7 1326 260 119 17 0 chr11 97252129 97252188 -24591668 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1326 261 0 0 0 chr11 97252307 97252336 -24591520 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7 1326 1159 84 33 22 chr11 97252399 97252582 -24591274 - B2_Mm2 SINE B2 -9 186 2 7 1326 621 203 120 0 chr11 97252586 97252719 -24591137 - B1_Mur1 SINE Alu 0 149 1 7 1326 568 246 146 0 chr11 97253067 97253238 -24590618 - B3 SINE B2 -19 197 2 8 1326 430 289 51 41 chr11 97253645 97253840 -24590016 - B3A SINE B2 0 198 2 8 1326 367 308 0 64 chr11 97253847 97253972 -24589884 - PB1D9 SINE Alu -2 118 2 8 1326 574 294 21 47 chr11 97254062 97254074 -24589782 - B3 SINE B2 -19 197 186 8 1326 195 69 0 0 chr11 97254074 97254103 -24589753 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 8 1326 577 269 25 51 chr11 97254103 97254283 -24589573 - B3A SINE B2 -31 185 10 8 1327 271 65 21 21 chr11 97258365 97258412 -24585444 + (GAAA)n Simple_repeat Simple_repeat 3 49 0 8 1327 1341 49 60 5 chr11 97260283 97260467 -24583389 - B2_Mm2 SINE B2 0 195 2 8 1327 579 157 111 0 chr11 97260596 97260704 -24583152 - B1_Mus1 SINE Alu -23 125 6 8 1327 1309 60 43 0 chr11 97260785 97260969 -24582887 - B2_Mm1t SINE B2 -1 192 1 8 1327 745 204 39 59 chr11 97261005 97261208 -24582648 + B3 SINE B2 1 199 -17 8 1327 615 48 286 0 chr11 97261220 97261325 -24582531 + B1_Mus1 SINE Alu 6 140 -8 8 1327 194 0 0 37 chr11 97261325 97261352 -24582504 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1327 676 164 17 8 chr11 97261389 97261506 -24582350 + PB1D9 SINE Alu 1 118 -2 8 1327 306 300 62 0 chr11 97261560 97261640 -24582216 + RSINE1 SINE B4 3 87 -78 8 1327 681 212 29 0 chr11 97263226 97263363 -24580493 + B1F SINE Alu 1 141 -8 8 1327 505 115 1 29 chr11 97263796 97263904 -24579952 - B1_Mus2 SINE Alu -2 145 25 8 1327 444 82 0 0 chr11 97265489 97265550 -24578306 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1327 215 213 26 26 chr11 97265632 97265709 -24578147 + G-rich Low_complexity Low_complexity 2 78 0 8 1327 224 214 0 77 chr11 97265888 97265979 -24577877 + G-rich Low_complexity Low_complexity 6 89 0 8 1327 306 348 0 0 chr11 97268168 97268257 -24575599 + C-rich Low_complexity Low_complexity 5 93 0 8 1327 317 286 120 14 chr11 97268409 97268551 -24575305 + MIRb SINE MIR 42 198 -70 8 1327 326 294 42 84 chr11 97269080 97269247 -24574609 + B4 SINE B4 64 223 -69 8 1327 750 126 23 16 chr11 97269120 97269249 -24574607 + B1_Mur1 SINE Alu 20 149 0 8 1327 267 261 0 185 chr11 97269811 97269856 -24574000 + Tigger5 DNA MER2_type 1 33 -2373 8 1327 574 257 7 20 chr11 97269856 97270007 -24573849 - B1F SINE Alu 0 149 1 8 1327 267 261 0 185 chr11 97270007 97270069 -24573787 + Tigger5 DNA MER2_type 34 88 -2318 8 1327 727 273 45 35 chr11 97270069 97270270 -24573586 - ID_B1 SINE B4 -11 213 11 8 1327 435 227 0 0 chr11 97270458 97270555 -24573301 - B1_Mur1 SINE Alu -26 123 27 8 1327 1373 140 0 0 chr11 97271010 97271224 -24572632 - B3 SINE B2 0 216 3 8 1327 1588 36 0 0 chr11 97271249 97271441 -24572415 - B2_Mm1t SINE B2 0 193 2 8 1327 320 315 90 102 chr11 97271481 97271647 -24572209 - RSINE1 SINE B4 0 165 2 8 1327 820 224 78 39 chr11 97271681 97271885 -24571971 - B3 SINE B2 -2 214 3 8 1327 787 204 0 0 chr11 97271923 97272065 -24571791 - B1_Mur2 SINE Alu -7 142 1 8 1327 413 214 11 0 chr11 97272067 97272156 -24571700 - B3 SINE B2 -1 215 126 8 1327 185 163 0 44 chr11 97272205 97272250 -24571606 + T-rich Low_complexity Low_complexity 3 45 0 8 1327 575 262 21 0 chr11 97272251 97272396 -24571460 - B1F SINE Alu -1 148 1 8 1327 286 323 70 81 chr11 97272900 97272942 -24570914 + ID_B1 SINE B4 54 222 -1 8 1327 336 293 108 47 chr11 97272942 97273071 -24570785 + B1F1 SINE Alu 13 149 0 8 1327 1115 70 0 0 chr11 97273074 97273216 -24570640 + B1_Mus1 SINE Alu 1 142 -6 8 1327 216 86 0 0 chr11 97273218 97273253 -24570603 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1327 209 57 0 28 chr11 97274862 97274898 -24568958 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1327 1055 99 0 4 chr11 97274904 97275169 -24568687 + (TG)n Simple_repeat Simple_repeat 1 263 0 8 1327 653 267 184 48 chr11 97275175 97275403 -24568453 - B4A SINE B4 -29 263 5 8 1327 190 0 32 32 chr11 97275419 97275450 -24568406 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1327 454 91 6 0 chr11 97275450 97275531 -24568325 - B1_Mus2 SINE Alu -7 140 61 8 1327 1031 149 4 153 chr11 97276017 97276127 -24567729 - URR1A DNA MER1_type 0 226 140 8 1327 870 118 29 22 chr11 97276127 97276265 -24567591 - B1_Mus1 SINE Alu -9 139 1 8 1327 1031 149 4 153 chr11 97276265 97276415 -24567441 - URR1A DNA MER1_type -87 139 5 8 1327 23 0 0 0 chr11 97278389 97278412 -24565444 + AT_rich Low_complexity Low_complexity 1 23 0 8 1327 1060 110 7 0 chr11 97278414 97278560 -24565296 - B1_Mus1 SINE Alu 0 148 2 8 1327 796 127 274 12 chr11 97278677 97278845 -24565011 + B3 SINE B2 5 216 0 8 1327 570 194 72 8 chr11 97279190 97279315 -24564541 + B1_Mus2 SINE Alu 1 133 -14 8 1327 282 174 68 30 chr11 97279602 97279700 -24564156 - PB1D10 SINE Alu 0 117 18 8 1327 211 269 12 50 chr11 97279729 97279832 -24564024 - MIRm SINE MIR -67 195 100 8 1327 327 171 43 0 chr11 97280672 97280742 -24563114 + L2b LINE L2 3289 3361 -14 8 1327 189 291 62 25 chr11 97280912 97280993 -24562863 - MIRc SINE MIR -149 119 36 8 1327 207 318 4 4 chr11 97281003 97281077 -24562779 + L2b LINE L2 3312 3385 -2 8 1327 1638 36 0 15 chr11 97281577 97281772 -24562084 - B2_Mm1a SINE B2 0 193 2 8 1327 1195 168 76 5 chr11 97281798 97281996 -24561860 - B3 SINE B2 -4 212 1 8 1327 1422 72 0 58 chr11 97282630 97282835 -24561021 - B2_Mm2 SINE B2 0 195 3 8 1327 1184 62 0 0 chr11 97283076 97283221 -24560635 + B1_Mus1 SINE Alu 1 145 -3 8 1327 438 241 0 0 chr11 97283247 97283334 -24560522 + ID_B1 SINE B4 138 224 0 8 1327 268 221 43 14 chr11 97283348 97283417 -24560439 + L3 LINE CR1 4303 4373 -116 8 1327 212 275 57 14 chr11 97284807 97284877 -24558979 + PB1D10 SINE Alu 43 115 -2 8 1327 601 198 33 0 chr11 97284891 97285012 -24558844 + ID_B1 SINE B4 2 126 -98 8 1327 366 193 10 83 chr11 97285036 97285052 -24558804 - MT2B LTR ERVL -352 249 164 8 1327 488 130 13 0 chr11 97285052 97285129 -24558727 - PB1D9 SINE Alu -42 78 1 8 1327 350 214 83 0 chr11 97286336 97286420 -24557436 - PB1D9 SINE Alu -4 116 26 8 1327 788 63 0 9 chr11 97286544 97286656 -24557200 + (TTTTC)n Simple_repeat Simple_repeat 4 114 0 8 1327 954 113 0 60 chr11 97286656 97286800 -24557056 - B1_Mus1 SINE Alu -12 136 1 8 1327 1151 188 51 0 chr11 97286827 97287024 -24556832 - B3 SINE B2 -9 207 1 8 1327 787 282 28 5 chr11 97287041 97287255 -24556601 - ID_B1 SINE B4 -5 219 1 8 1327 22 35 0 0 chr11 97287318 97287347 -24556509 + AT_rich Low_complexity Low_complexity 1 29 0 8 1327 465 19 0 0 chr11 97287591 97287645 -24556211 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1327 225 318 111 77 chr11 97287653 97287675 -24556181 + RLTR25A LTR ERVK 737 791 -312 8 1327 703 136 0 48 chr11 97287675 97287799 -24556057 + B1_Mus2 SINE Alu 28 145 -2 8 1327 225 318 111 77 chr11 97287799 97287860 -24555996 + RLTR25A LTR ERVK 792 954 -149 8 1327 1616 47 0 0 chr11 97287860 97288052 -24555804 + B2_Mm1a SINE B2 2 193 0 8 1327 225 318 111 77 chr11 97288052 97288195 -24555661 + RLTR25A LTR ERVK 955 1099 -4 8 1327 651 168 0 0 chr11 97288152 97288259 -24555597 - B1_Mur4 SINE Alu -34 116 10 8 1327 242 29 29 0 chr11 97288314 97288349 -24555507 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1327 1041 168 29 44 chr11 97288484 97288689 -24555167 - B3 SINE B2 -14 202 1 8 1327 365 250 38 68 chr11 97288711 97288844 -24555012 - B1F SINE Alu -2 147 19 8 1327 252 100 0 0 chr11 97290321 97290361 -24553495 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1327 555 202 160 0 chr11 97290372 97290491 -24553365 + ID_B1 SINE B4 86 223 -1 8 1327 546 108 0 12 chr11 97290775 97290859 -24552997 + B1_Mus2 SINE Alu 13 95 -52 8 1327 243 262 33 67 chr11 97290844 97290934 -24552922 - RSINE1 SINE B4 -41 124 38 8 1327 21 0 0 0 chr11 97291626 97291647 -24552209 + AT_rich Low_complexity Low_complexity 1 21 0 8 1327 1144 95 0 0 chr11 97291647 97291794 -24552062 - B1_Mus1 SINE Alu 0 148 2 8 1327 878 169 193 17 chr11 97291799 97291980 -24551876 - B3 SINE B2 0 216 4 8 1327 507 73 0 0 chr11 97291984 97292052 -24551804 + (TCC)n Simple_repeat Simple_repeat 1 68 0 8 1327 234 0 0 0 chr11 97292062 97292088 -24551768 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8 1327 1235 76 0 12 chr11 97292088 97292250 -24551606 - B2_Mm2 SINE B2 -33 162 1 8 1327 317 179 26 0 chr11 97292260 97292338 -24551518 + CT-rich Low_complexity Low_complexity 4 83 0 8 1327 544 264 41 72 chr11 97292345 97292367 -24551489 - ID_B1 SINE B4 -46 246 195 8 1327 906 116 7 0 chr11 97292367 97292505 -24551351 - B1_Mus2 SINE Alu 0 147 9 8 1327 265 296 38 52 chr11 97292407 97292617 -24551239 - ORR1B1-int LTR MaLR -755 754 548 8 1327 544 264 41 72 chr11 97292505 97292576 -24551280 - ID_B1 SINE B4 -46 194 17 8 1327 238 242 68 98 chr11 97293975 97294108 -24549748 - YREP_Mm Unknown Unknown -1461 351 223 8 1327 425 254 23 62 chr11 97294037 97294167 -24549689 + B1F1 SINE Alu 25 149 0 8 1327 1511 55 16 0 chr11 97294181 97294363 -24549493 + B2_Mm2 SINE B2 3 187 -8 8 1327 475 247 58 75 chr11 97294374 97294562 -24549294 - B3A SINE B2 -13 185 1 8 1327 320 164 15 0 chr11 97294712 97294779 -24549077 + CT-rich Low_complexity Low_complexity 3 70 0 8 1327 888 150 7 0 chr11 97294787 97294927 -24548929 - B1_Mur4 SINE Alu -8 142 2 8 1327 500 278 113 0 chr11 97294934 97295067 -24548789 - B1_Mur1 SINE Alu 0 149 2 8 1327 1170 62 7 14 chr11 97295169 97295317 -24548539 - B1_Mus1 SINE Alu -1 147 1 9 1327 489 123 0 0 chr11 97295319 97295400 -24548456 - Lx2A1 LINE L1 -4 7004 6924 9 1327 747 128 32 57 chr11 97295413 97295571 -24548285 - B2_Mm2 SINE B2 -19 176 23 9 1327 567 239 6 70 chr11 97295575 97295746 -24548110 - B4 SINE B4 -67 225 66 9 1327 819 73 18 0 chr11 97295749 97295858 -24547998 - PB1D9 SINE Alu -9 111 1 9 1327 31 26 0 0 chr11 97295858 97295896 -24547960 + AT_rich Low_complexity Low_complexity 1 38 0 9 1327 570 234 0 0 chr11 97298124 97298231 -24545625 + B1_Mur1 SINE Alu 1 107 -42 9 1327 687 251 57 31 chr11 97298254 97298447 -24545409 + B3A SINE B2 1 198 0 9 1327 1161 70 0 0 chr11 97298468 97298610 -24545246 + B1_Mus1 SINE Alu 1 142 -6 9 1327 180 0 0 0 chr11 97298612 97298632 -24545224 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1327 452 256 144 8 chr11 97298639 97298757 -24545099 + ID_B1 SINE B4 82 215 -9 9 1327 366 154 0 0 chr11 97298758 97298836 -24545020 + (CATA)n Simple_repeat Simple_repeat 4 81 0 9 1327 607 236 8 8 chr11 97298853 97298981 -24544875 + B1F1 SINE Alu 10 137 -12 9 1327 339 284 39 27 chr11 97299668 97299828 -24544028 + B4 SINE B4 2 165 0 9 1327 342 243 14 0 chr11 97299895 97299969 -24543887 + B1_Mur2 SINE Alu 46 120 -29 9 1327 183 170 80 60 chr11 97300185 97300235 -24543621 - L3 LINE CR1 -2110 2379 2329 9 1327 29 101 0 0 chr11 97301514 97301613 -24542243 + GC_rich Low_complexity Low_complexity 1 99 0 9 1327 276 77 0 0 chr11 97304890 97304929 -24538927 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 9 1327 697 160 144 0 chr11 97304930 97305055 -24538801 - B1_Mus1 SINE Alu -5 143 1 9 1327 238 293 20 10 chr11 97305055 97305155 -24538701 + (TG)n Simple_repeat Simple_repeat 2 102 0 9 1327 217 381 65 59 chr11 97306008 97306178 -24537678 + MIR3 SINE MIR 19 189 -19 9 1327 252 0 0 0 chr11 97306484 97306512 -24537344 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1327 233 98 0 24 chr11 97306512 97306553 -24537303 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1327 183 189 27 0 chr11 97307111 97307148 -24536708 + L3 LINE CR1 4435 4472 -17 9 1327 236 111 0 22 chr11 97307820 97307866 -24535990 + (GGA)n Simple_repeat Simple_repeat 3 47 0 9 1327 655 255 38 52 chr11 97308659 97308698 -24535158 - B3 SINE B2 -7 209 169 9 1327 489 34 0 0 chr11 97308698 97308757 -24535099 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1327 655 255 38 52 chr11 97308757 97308928 -24534928 - B3 SINE B2 -48 168 2 9 1327 198 0 0 0 chr11 97308957 97308979 -24534877 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1327 406 242 20 31 chr11 97309013 97309111 -24534745 - RSINE1 SINE B4 -13 152 56 9 1327 183 382 29 19 chr11 97309167 97309271 -24534585 + L2b LINE L2 3225 3329 -46 9 1327 224 209 0 0 chr11 97312374 97312417 -24531439 + (CAGGG)n Simple_repeat Simple_repeat 4 46 0 9 1327 252 0 0 0 chr11 97312495 97312523 -24531333 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1327 269 291 11 11 chr11 97314057 97314235 -24529621 + CT-rich Low_complexity Low_complexity 1 178 0 9 1327 414 218 0 0 chr11 97315832 97315942 -24527914 + (TG)n Simple_repeat Simple_repeat 2 111 0 9 1327 182 108 0 51 chr11 97315935 97315974 -24527882 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 9 1327 680 64 0 11 chr11 97316141 97316236 -24527620 + (TCTCCC)n Simple_repeat Simple_repeat 6 99 0 9 1327 414 162 80 14 chr11 97316316 97316421 -24527435 - B1F SINE Alu -1 148 33 9 1327 21 0 0 0 chr11 97316442 97316463 -24527393 + AT_rich Low_complexity Low_complexity 1 21 0 9 1327 836 199 188 0 chr11 97316636 97316817 -24527039 - B3 SINE B2 0 216 2 9 1327 334 306 52 43 chr11 97316817 97316842 -24527014 - B1F1 SINE Alu -2 147 125 9 1327 1410 93 5 5 chr11 97316842 97317036 -24526820 - B2_Mm2 SINE B2 -1 194 1 9 1327 334 306 52 43 chr11 97317036 97317126 -24526730 - B1F1 SINE Alu -25 124 31 9 1327 184 261 75 64 chr11 97317611 97317705 -24526151 - MIRm SINE MIR -151 125 31 9 1327 198 0 0 0 chr11 97318013 97318035 -24525821 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 9 1327 566 250 20 20 chr11 97318689 97318836 -24525020 + B1F SINE Alu 3 149 0 9 1327 283 250 15 0 chr11 97318839 97318907 -24524949 + ID4 SINE ID 2 70 -13 9 1327 432 0 0 0 chr11 97318907 97318955 -24524901 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1327 261 0 0 0 chr11 97318955 97318983 -24524873 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1327 742 346 18 25 chr11 97319171 97319447 -24524409 - MER2 DNA MER2_type -55 290 17 9 1327 362 316 42 104 chr11 97320381 97320425 -24523431 - B4A SINE B4 -28 264 150 9 1327 840 167 0 0 chr11 97320425 97320563 -24523293 - B1_Mus2 SINE Alu -1 146 9 9 1327 362 316 42 104 chr11 97320563 97320593 -24523263 - B4A SINE B4 -28 149 66 9 1327 311 252 227 8 chr11 97321562 97321593 -24522263 + B4A SINE B4 39 97 -195 9 1327 656 127 55 0 chr11 97321593 97321703 -24522153 + B1_Mus2 SINE Alu 1 116 -31 9 1327 239 244 86 0 chr11 97321704 97321771 -24522085 + ID4_ SINE ID 1 76 -76 9 1327 207 100 0 0 chr11 97321771 97321801 -24522055 + (CAA)n Simple_repeat Simple_repeat 1 30 0 9 1327 219 336 78 0 chr11 97321801 97321849 -24522007 + BC1_Mm scRNA scRNA 77 124 -28 9 1327 1193 69 0 0 chr11 97321850 97321995 -24521861 + B1_Mm SINE Alu 2 146 -1 9 1327 317 207 0 12 chr11 97322015 97322098 -24521758 + GA-rich Low_complexity Low_complexity 3 84 0 9 1327 529 261 94 0 chr11 97322100 97322238 -24521618 + RSINE1 SINE B4 2 152 -13 9 1327 315 0 0 0 chr11 97322260 97322295 -24521561 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 9 1327 203 267 204 82 chr11 97322511 97322756 -24521100 - L2 LINE L2 -669 2750 2476 9 1327 214 135 0 0 chr11 97323162 97323199 -24520657 + B3A SINE B2 1 37 -161 9 1327 243 0 0 0 chr11 97323221 97323248 -24520608 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1327 1017 132 0 20 chr11 97323257 97323404 -24520452 - B1_Mus1 SINE Alu 0 148 5 9 1327 833 240 21 21 chr11 97323414 97323601 -24520255 + B3 SINE B2 30 216 0 9 1327 1013 76 26 53 chr11 97323642 97323794 -24520062 + B1_Mus1 SINE Alu 1 148 0 9 1327 237 218 0 0 chr11 97323807 97323885 -24519971 + A-rich Low_complexity Low_complexity 1 78 0 9 1327 209 341 149 29 chr11 97323888 97324063 -24519793 - L2 LINE L2 -1294 2125 1930 9 1327 428 127 114 0 chr11 97324199 97324278 -24519578 + B1_Mus1 SINE Alu 2 89 -59 9 1327 529 228 38 45 chr11 97324278 97324411 -24519445 - B1_Mus2 SINE Alu -13 134 3 9 1327 302 204 111 61 chr11 97324411 97324430 -24519426 + PB1D9 SINE Alu 91 105 -15 9 1327 27 62 0 0 chr11 97324774 97324822 -24519034 + GC_rich Low_complexity Low_complexity 1 48 0 9 1327 221 83 0 27 chr11 97325047 97325084 -24518772 + (CAGGG)n Simple_repeat Simple_repeat 1 36 0 9 1327 324 257 0 14 chr11 97325861 97325951 -24517905 - MIRc SINE MIR -40 168 81 9 1327 187 371 112 0 chr11 97326707 97326823 -24517033 - L3 LINE CR1 -78 4411 4283 9 1327 364 265 183 0 chr11 97326823 97326958 -24516898 + B3 SINE B2 2 165 -33 9 1327 423 0 0 0 chr11 97326968 97327015 -24516841 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1327 630 0 0 0 chr11 97328104 97328174 -24515682 + (TTTTG)n Simple_repeat Simple_repeat 3 72 0 9 1327 235 184 0 0 chr11 97328198 97328236 -24515620 - B1F2 SINE Alu -97 52 15 9 1327 385 276 38 0 chr11 97328847 97328952 -24514904 - RSINE1 SINE B4 -54 111 3 9 1327 1421 76 11 0 chr11 97328960 97329145 -24514711 - B2_Mm1t SINE B2 -6 187 1 9 1327 274 352 33 33 chr11 97330479 97330629 -24513227 - MER20 DNA MER1_type -6 213 64 9 1327 315 304 35 35 chr11 97330649 97330765 -24513091 + RSINE1 SINE B4 21 136 -29 9 1327 468 336 38 42 chr11 97330811 97331050 -24512806 + B4A SINE B4 55 292 0 9 1327 190 281 79 0 chr11 97331233 97331322 -24512534 - L2c LINE L2 -274 3113 3018 9 1327 30 59 0 0 chr11 97331851 97331902 -24511954 + AT_rich Low_complexity Low_complexity 1 51 0 9 1327 294 313 44 18 chr11 97332024 97332158 -24511698 - MIRc SINE MIR -82 186 45 9 1327 513 209 86 0 chr11 97332196 97332301 -24511555 + PB1D10 SINE Alu 4 117 0 9 1327 895 147 25 4 chr11 97332331 97332483 -24511373 + B1_Mur3 SINE Alu 7 141 -8 9 1327 614 302 58 5 chr11 97332599 97332789 -24511067 - MER63A DNA AcHobo -1 209 10 9 1327 763 174 7 28 chr11 97333077 97333219 -24510637 - B1_Mur4 SINE Alu -11 139 1 9 1327 377 272 11 0 chr11 97333293 97333385 -24510471 - RSINE1 SINE B4 -68 97 5 9 1327 816 199 165 6 chr11 97333423 97333605 -24510251 - B3 SINE B2 -5 211 1 9 1327 286 243 111 46 chr11 97333608 97333716 -24510140 - PB1D10 SINE Alu -2 115 1 9 1327 281 311 10 7 chr11 97333716 97333807 -24510049 - ID4_ SINE ID -61 91 4 9 1327 2030 119 94 6 chr11 97333923 97334253 -24509603 - RLTR15 LTR ERVK 0 359 1 9 1327 545 258 0 16 chr11 97334406 97334528 -24509328 - PB1D7 SINE Alu 0 120 1 9 1327 251 238 0 60 chr11 97334468 97334535 -24509321 - B4A SINE B4 -147 145 83 9 1327 294 307 48 43 chr11 97334583 97334770 -24509086 - B2_Mm2 SINE B2 -6 189 2 9 1327 655 230 22 0 chr11 97334633 97334772 -24509084 - RSINE1 SINE B4 -23 142 1 9 1327 216 86 0 0 chr11 97334778 97334813 -24509043 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1327 1084 96 0 14 chr11 97334815 97334963 -24508893 - B1_Mus1 SINE Alu -2 146 1 9 1327 560 254 17 0 chr11 97335066 97335184 -24508672 - PB1D7 SINE Alu 0 120 1 9 1327 405 58 0 0 chr11 97335211 97335263 -24508593 + (TTAG)n Simple_repeat Simple_repeat 3 54 0 1 1327 637 266 0 0 chr11 97335280 97335423 -24508433 - RSINE1 SINE B4 -20 145 3 1 1327 844 273 95 11 chr11 97335584 97335847 -24508009 - B4A SINE B4 -6 286 2 1 1327 445 253 133 18 chr11 97338019 97338184 -24505672 - CYRA11_Mm Unknown Y-chromosome -227 390 207 1 1327 724 222 43 0 chr11 97338045 97338207 -24505649 + URR1B DNA MER1_type 49 217 -8 1 1327 223 288 91 25 chr11 97338307 97338428 -24505428 - MIRb SINE MIR -115 161 33 1 1327 546 235 80 7 chr11 97339940 97340077 -24503779 - B1_Mur2 SINE Alu -2 147 1 1 1327 492 231 41 16 chr11 97340289 97340412 -24503444 - RSINE1 SINE B4 -38 127 2 1 1327 233 256 114 23 chr11 97340556 97340644 -24503212 - Lx8 LINE L1 -1588 5885 5790 1 1327 482 246 22 29 chr11 97340672 97340810 -24503046 - L1M2 LINE L1 -686 5614 5478 1 1327 355 250 0 0 chr11 97340854 97340926 -24502930 - ID_B1 SINE B4 -60 164 93 1 1327 930 300 103 2 chr11 97341041 97341469 -24502387 - L1M2 LINE L1 -2137 4006 3536 1 1327 1250 41 0 7 chr11 97341544 97341692 -24502164 - B1_Mus2 SINE Alu 0 147 1 1 1327 398 275 131 28 chr11 97341715 97341754 -24502102 - B3A SINE B2 -4 194 158 1 1327 447 68 0 0 chr11 97341754 97341813 -24502043 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1327 398 275 131 28 chr11 97341813 97341949 -24501907 - B3A SINE B2 -41 157 1 1 1327 618 218 123 37 chr11 97342204 97342346 -24501510 - RLTR15 LTR ERVK -95 264 101 1 1327 423 0 0 0 chr11 97342346 97342393 -24501463 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1327 618 218 123 37 chr11 97342393 97342493 -24501363 - RLTR15 LTR ERVK -259 100 1 1 1327 301 294 115 19 chr11 97342501 97342605 -24501251 - B3 SINE B2 0 216 103 1 1327 473 214 274 19 chr11 97342600 97342757 -24501099 - ID_B1 SINE B4 -26 198 2 1 1327 230 243 28 28 chr11 97342950 97343022 -24500834 - L1_Mm LINE L1 -3572 2311 2240 1 1327 1012 226 171 7 chr11 97343746 97344044 -24499812 - MTD LTR MaLR -22 397 51 1 1327 561 88 0 0 chr11 97344335 97344415 -24499441 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 1 1327 647 166 68 11 chr11 97344415 97344569 -24499287 - B3A SINE B2 -54 162 6 1 1327 238 278 22 0 chr11 97344891 97345036 -24498820 + A-rich Low_complexity Low_complexity 1 148 0 1 1327 288 264 42 0 chr11 97345071 97345143 -24498713 + B4 SINE B4 2 76 -216 1 1327 278 203 61 30 chr11 97345193 97345259 -24498597 + RSINE1 SINE B4 65 132 -33 1 1327 409 130 26 0 chr11 97345295 97345372 -24498484 - L1Md_F2 LINE L1 -3 6579 6501 1 1327 291 191 16 0 chr11 97345406 97345469 -24498387 + B3 SINE B2 153 216 0 1 1327 263 273 7 40 chr11 97345474 97345488 -24498368 + A-rich Low_complexity Low_complexity 1 14 0 1 1327 1196 48 7 7 chr11 97345488 97345636 -24498220 + B1_Mus1 SINE Alu 1 148 0 1 1327 263 273 7 40 chr11 97345636 97345714 -24498142 + A-rich Low_complexity Low_complexity 15 90 0 1 1327 820 188 0 7 chr11 97345714 97345859 -24497997 + B1_Mus1 SINE Alu 5 148 0 1 1327 263 273 7 40 chr11 97345859 97345914 -24497942 + A-rich Low_complexity Low_complexity 91 143 0 1 1327 288 245 135 9 chr11 97346158 97346269 -24497587 + B1F2 SINE Alu 9 133 -16 1 1327 207 0 0 0 chr11 97346281 97346304 -24497552 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 1 1327 949 117 0 14 chr11 97346917 97347065 -24496791 - B1_Mus1 SINE Alu -1 147 2 1 1327 392 248 71 100 chr11 97347065 97347092 -24496764 - B4A SINE B4 -214 78 57 1 1327 314 185 41 61 chr11 97347179 97347277 -24496579 - ID_B1 SINE B4 0 224 129 1 1327 762 209 99 0 chr11 97347376 97347548 -24496308 - B3 SINE B2 -27 189 1 1 1327 482 233 10 0 chr11 97347627 97347730 -24496126 + PB1D7 SINE Alu 6 109 -11 1 1327 276 305 124 0 chr11 97347975 97348080 -24495776 - L1MC1 LINE L1 -29 6304 6187 1 1327 358 288 81 0 chr11 97348195 97348306 -24495550 - L1MC1 LINE L1 -192 6141 6022 1 1327 1435 80 5 11 chr11 97348469 97348658 -24495198 - B2_Mm2 SINE B2 -6 189 2 1 1327 499 219 0 50 chr11 97348711 97348831 -24495025 - PB1D10 SINE Alu -2 115 2 1 1327 225 300 57 0 chr11 97348834 97348904 -24494952 - L1MC1 LINE L1 -511 5822 5749 1 1327 939 230 24 5 chr11 97349540 97349745 -24494111 - B3 SINE B2 -4 212 4 1 1327 1210 68 0 0 chr11 97349756 97349902 -24493954 - B1_Mus1 SINE Alu 0 148 3 1 1327 776 269 108 35 chr11 97350012 97350270 -24493586 - B4A SINE B4 -11 281 5 1 1327 514 232 54 0 chr11 97350310 97350422 -24493434 + PB1D7 SINE Alu 3 120 0 1 1327 356 292 26 34 chr11 97350471 97350588 -24493268 - PB1D7 SINE Alu -2 118 3 1 1327 512 286 50 45 chr11 97351546 97351725 -24492131 + B3A SINE B2 7 186 -12 1 1327 668 237 191 0 chr11 97351743 97351916 -24491940 + B3 SINE B2 1 206 -10 1 1327 22 88 0 0 chr11 97352063 97352120 -24491736 + AT_rich Low_complexity Low_complexity 1 57 0 1 1327 273 89 0 0 chr11 97352722 97352767 -24491089 + (CAGGG)n Simple_repeat Simple_repeat 1 45 0 1 1327 333 289 9 28 chr11 97352848 97352955 -24490901 + C-rich Low_complexity Low_complexity 5 109 0 1 1327 238 277 145 0 chr11 97354664 97354747 -24489109 + MIRc SINE MIR 61 155 -113 1 1327 490 203 206 24 chr11 97354789 97354909 -24488947 + B1F1 SINE Alu 1 144 -5 1 1327 185 0 40 0 chr11 97354909 97354934 -24488922 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1327 499 267 72 150 chr11 97354966 97355323 -24488533 + L1MC LINE L1 3073 3380 -2766 1 1327 1511 54 16 0 chr11 97355323 97355507 -24488349 - B2_Mm2 SINE B2 -7 188 2 1 1327 499 267 72 150 chr11 97355507 97355690 -24488166 + L1MC LINE L1 3381 3571 -2575 1 1327 385 256 0 0 chr11 97355746 97355824 -24488032 - RSINE1 SINE B4 -77 88 11 1 1327 360 240 147 20 chr11 97355852 97355954 -24487902 - PB1D10 SINE Alu -2 115 1 1 1327 2049 159 72 6 chr11 97356003 97356363 -24487493 - ORR1C2 LTR MaLR 0 384 1 1 1327 442 228 0 106 chr11 97356494 97356515 -24487341 + B3A SINE B2 43 62 -136 1 1327 204 40 0 0 chr11 97356515 97356540 -24487316 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1327 1209 29 0 0 chr11 97356540 97356677 -24487179 - B1_Mm SINE Alu -9 138 2 1 1327 442 253 0 116 chr11 97356677 97356803 -24487053 + B3A SINE B2 54 158 -37 1 1327 429 81 0 0 chr11 97356803 97356865 -24486991 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1327 278 316 0 139 chr11 97356865 97356896 -24486960 + B2_Mm2 SINE B2 159 189 -6 1 1327 312 27 0 0 chr11 97356933 97356970 -24486886 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1327 602 279 19 13 chr11 97356989 97357145 -24486711 + B3A SINE B2 42 198 0 1 1327 578 256 23 88 chr11 97357365 97357405 -24486451 + B3 SINE B2 1 41 -175 1 1327 646 118 85 68 chr11 97357405 97357523 -24486333 + PB1D9 SINE Alu 1 120 0 1 1327 578 256 23 88 chr11 97357523 97357653 -24486203 + B3 SINE B2 42 160 -56 1 1327 567 0 0 0 chr11 97357655 97357718 -24486138 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1327 501 17 0 0 chr11 97357721 97357779 -24486077 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 1 1327 752 154 175 12 chr11 97358200 97358371 -24485485 + URR1A DNA MER1_type 4 202 -24 1 1327 198 0 0 0 chr11 97359402 97359424 -24484432 + (GGCTG)n Simple_repeat Simple_repeat 5 26 0 1 1327 864 186 106 0 chr11 97359424 97359612 -24484244 + B3 SINE B2 9 216 0 1 1327 662 153 132 37 chr11 97359785 97359921 -24483935 + B1_Mur4 SINE Alu 2 150 0 1 1327 418 340 125 47 chr11 97359959 97360255 -24483601 - MLT1A LTR MaLR -55 319 1 1 1327 27 0 0 0 chr11 97361750 97361777 -24482079 + GC_rich Low_complexity Low_complexity 1 27 0 1 1327 24 0 0 0 chr11 97362030 97362054 -24481802 + GC_rich Low_complexity Low_complexity 1 24 0 1 1327 318 67 0 0 chr11 97362872 97362917 -24480939 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1327 288 275 50 0 chr11 97364265 97364375 -24479481 - MIRc SINE MIR -101 167 54 1 1327 918 132 35 7 chr11 97364766 97364911 -24478945 - B1F1 SINE Alu 0 149 1 1 1327 465 326 36 68 chr11 97364913 97365287 -24478569 + MTEb LTR MaLR 6 370 -9 1 1327 838 28 9 0 chr11 97365321 97365430 -24478426 - B1_Mm SINE Alu 0 147 38 1 1327 304 173 104 26 chr11 97365363 97365440 -24478416 - RLTR25B LTR ERVK -519 509 427 1 1327 221 0 35 0 chr11 97365440 97365469 -24478387 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 1 1327 1197 62 14 0 chr11 97365469 97365614 -24478242 - B1_Mus1 SINE Alu 0 148 2 1 1327 579 308 126 37 chr11 97365622 97366131 -24477725 + L1M4 LINE L1 2269 2822 -3324 1 1327 592 214 26 0 chr11 97366138 97366255 -24477601 + RSINE1 SINE B4 2 121 -44 1 1327 790 165 0 0 chr11 97366255 97366382 -24477474 + B1_Mus2 SINE Alu 1 127 -20 1 1327 944 131 206 0 chr11 97366464 97366639 -24477217 + B3 SINE B2 1 211 -5 1 1327 590 291 6 52 chr11 97366690 97366864 -24476992 + ID_B1 SINE B4 58 223 -1 1 1327 350 286 34 51 chr11 97366972 97367090 -24476766 + RSINE1 SINE B4 34 149 -16 1 1327 414 278 38 85 chr11 97367327 97367539 -24476317 + L1MB7 LINE L1 5960 6161 -23 1 1327 275 254 250 16 chr11 97367925 97368049 -24475807 + B3A SINE B2 43 195 -3 1 1327 247 207 0 33 chr11 97368129 97368189 -24475667 + C-rich Low_complexity Low_complexity 1 58 0 1 1327 278 225 176 22 chr11 97368323 97368414 -24475442 - PB1D10 SINE Alu -1 116 12 1 1327 264 336 8 57 chr11 97368521 97368564 -24475292 - ID_B1 SINE B4 -22 202 160 1 1327 1376 71 55 0 chr11 97368564 97368746 -24475110 - B2_Mm2 SINE B2 -1 194 3 1 1327 264 336 8 57 chr11 97368746 97368825 -24475031 - ID_B1 SINE B4 -65 159 86 1 1327 431 139 11 79 chr11 97368839 97368955 -24474901 - B1_Mur2 SINE Alu 0 149 20 1 1327 852 246 131 41 chr11 97368981 97369248 -24474608 - B4A SINE B4 0 292 2 1 1327 850 124 27 33 chr11 97370305 97370455 -24473401 + B1_Mur3 SINE Alu 1 149 0 1 1327 324 341 84 60 chr11 97371947 97372231 -24471625 - L1MEe LINE L1 -3850 1004 714 1 1327 192 77 0 0 chr11 97372294 97372320 -24471536 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1327 202 231 0 19 chr11 97374300 97374353 -24469503 + GA-rich Low_complexity Low_complexity 2 53 0 1 1327 207 188 21 0 chr11 97375005 97375032 -24468824 + A-rich Low_complexity Low_complexity 2 29 0 1 1327 908 174 196 6 chr11 97375032 97375211 -24468645 + B3 SINE B2 3 215 -1 1 1327 207 188 21 0 chr11 97375211 97375231 -24468625 + A-rich Low_complexity Low_complexity 30 49 0 1 1327 291 137 6 19 chr11 97375265 97375327 -24468529 + B1F SINE Alu 87 149 -1 1 1327 464 225 61 74 chr11 97375339 97375366 -24468490 + B4 SINE B4 69 192 -100 1 1327 854 109 8 15 chr11 97375366 97375496 -24468360 + B1_Mur4 SINE Alu 1 129 -21 1 1327 318 148 0 0 chr11 97375502 97375556 -24468300 + (AGGGGG)n Simple_repeat Simple_repeat 5 58 0 1 1327 896 0 0 9 chr11 97375557 97375662 -24468194 + (GAA)n Simple_repeat Simple_repeat 2 105 0 1 1327 893 199 15 61 chr11 97376062 97376260 -24467596 + B3A SINE B2 2 190 -8 1 1327 1061 84 21 7 chr11 97376267 97376411 -24467445 + B1_Mur4 SINE Alu 5 150 0 1 1327 1145 188 5 0 chr11 97376609 97376817 -24467039 - B3 SINE B2 -2 214 6 1 1327 253 306 46 9 chr11 97377514 97377623 -24466233 + PB1D10 SINE Alu 2 114 -3 1 1327 320 235 28 56 chr11 97377861 97377969 -24465887 - BC1_Mm scRNA scRNA -42 110 6 1 1327 342 127 113 0 chr11 97378341 97378412 -24465444 + 7SK RNA RNA 53 131 -200 1 1327 245 356 0 98 chr11 97378453 97378565 -24465291 + 7SK RNA RNA 144 244 -87 1 1327 197 369 67 8 chr11 97381542 97381676 -24462180 - MIR3 SINE MIR -25 183 42 1 1327 366 256 108 45 chr11 97382228 97382399 -24461457 - MIRc SINE MIR -89 173 3 1 1327 180 351 68 0 chr11 97385655 97385729 -24458127 + MIRc SINE MIR 88 166 -102 1 1327 534 277 47 13 chr11 97385829 97385979 -24457877 + RSINE1 SINE B4 11 165 0 1 1327 687 231 38 0 chr11 97386020 97386180 -24457676 + B3 SINE B2 1 166 -50 1 1327 332 103 17 0 chr11 97386180 97386238 -24457618 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1328 342 298 24 8 chr11 97387081 97387206 -24456650 - L1M3 LINE L1 -1310 4830 4704 1 1328 643 170 101 29 chr11 97388339 97388419 -24455437 + B1F SINE Alu 1 83 -66 1 1328 1100 73 15 0 chr11 97388419 97388556 -24455300 + B1_Mus1 SINE Alu 2 140 -8 1 1328 864 77 0 0 chr11 97388556 97388673 -24455183 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 1 1328 336 24 0 0 chr11 97388676 97388717 -24455139 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1328 643 170 101 29 chr11 97388717 97388770 -24455086 + B1F SINE Alu 84 145 -4 1 1328 517 204 46 9 chr11 97389165 97389274 -24454582 + PB1D10 SINE Alu 2 114 -3 1 1328 521 240 16 31 chr11 97389335 97389483 -24454373 + B4A SINE B4 1 145 -79 1 1328 457 102 0 14 chr11 97389525 97389595 -24454261 + B3A SINE B2 7 75 -123 1 1328 505 377 60 0 chr11 97389724 97389939 -24453917 - L3 LINE CR1 -738 3751 3524 1 1328 269 350 19 77 chr11 97389960 97390115 -24453741 - MIRb SINE MIR -6 262 117 1 1328 520 307 27 128 chr11 97390115 97390162 -24453694 + MLT1J1 LTR MaLR 61 94 -350 1 1328 959 114 7 28 chr11 97390162 97390306 -24453550 + B1_Mus1 SINE Alu 1 141 -7 1 1328 520 307 27 128 chr11 97390306 97390516 -24453340 + MLT1J1 LTR MaLR 95 292 -152 1 1328 457 298 65 88 chr11 97390586 97390803 -24453053 - B3 SINE B2 -2 214 3 1 1328 309 307 86 8 chr11 97390826 97390954 -24452902 - ID_B1 SINE B4 -5 219 82 1 1328 252 0 0 0 chr11 97391227 97391255 -24452601 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1328 184 239 109 0 chr11 97394877 97394923 -24448933 - MIR3 SINE MIR -21 187 137 1 1328 378 0 0 0 chr11 97397319 97397361 -24446495 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1328 531 0 0 0 chr11 97397361 97397419 -24446437 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1328 366 183 0 0 chr11 97398655 97398726 -24445130 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1328 1400 66 33 6 chr11 97399622 97399805 -24444051 - B2_Mm2 SINE B2 -6 189 2 1 1328 1391 80 43 0 chr11 97399807 97399994 -24443862 - B2_Mm2 SINE B2 0 195 1 1 1328 872 197 0 7 chr11 97399996 97400144 -24443712 - B1_Mur2 SINE Alu -2 147 1 1 1328 270 324 0 0 chr11 97400277 97400288 -24443568 + B4A SINE B4 75 85 -207 1 1328 418 239 143 23 chr11 97400288 97400421 -24443435 + B1F SINE Alu 1 149 0 1 1328 538 261 37 0 chr11 97400602 97400736 -24443120 - B1F1 SINE Alu 0 149 11 1 1328 349 339 2 12 chr11 97401296 97401588 -24442268 + G-rich Low_complexity Low_complexity 1 288 0 1 1328 543 214 92 14 chr11 97401862 97402004 -24441852 + RMER30 DNA MER1_type 2 154 -48 1 1328 283 310 92 49 chr11 97402204 97402367 -24441489 + MER5B DNA MER1_type 6 175 -3 1 1328 231 329 33 71 chr11 97402429 97402612 -24441244 - YREP_Mm Unknown Unknown -1451 361 186 1 1328 502 208 54 39 chr11 97402483 97402613 -24441243 + B1F1 SINE Alu 10 141 -8 1 1328 617 234 24 0 chr11 97402637 97402761 -24441095 + B1_Mur1 SINE Alu 2 128 -21 1 1328 227 209 207 0 chr11 97402791 97402850 -24441006 + ID4 SINE ID 6 76 -76 1 1328 211 333 79 48 chr11 97402872 97402998 -24440858 - MIRm SINE MIR -127 149 20 1 1328 475 288 0 15 chr11 97405791 97405925 -24437931 + RSINE1 SINE B4 33 164 -1 1 1328 573 171 152 9 chr11 97406985 97407097 -24436759 + B1_Mur2 SINE Alu 1 128 -21 1 1328 504 0 0 0 chr11 97407376 97407432 -24436424 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1328 32 43 0 0 chr11 97408341 97408387 -24435469 + GC_rich Low_complexity Low_complexity 1 46 0 1 1328 29 47 0 0 chr11 97408440 97408483 -24435373 + GC_rich Low_complexity Low_complexity 1 43 0 1 1328 740 191 107 66 chr11 97411293 97411489 -24432367 - ID_B1 SINE B4 -19 205 2 1 1328 507 73 0 0 chr11 97414709 97414777 -24429079 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1328 573 195 11 28 chr11 97414827 97415006 -24428850 + GA-rich Low_complexity Low_complexity 4 179 0 1 1328 1201 75 0 0 chr11 97415228 97415375 -24428481 + B1_Mus2 SINE Alu 1 147 0 1 1328 1351 224 44 14 chr11 97415707 97416051 -24427805 + Lx5 LINE L1 6697 7050 0 1 1328 271 208 107 40 chr11 97416072 97416147 -24427709 - PB1D10 SINE Alu -20 97 18 1 1328 189 132 0 0 chr11 97416838 97416876 -24426980 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1328 1200 81 0 0 chr11 97416896 97417044 -24426812 - B1_Mus1 SINE Alu 0 148 1 1 1328 360 0 0 0 chr11 97417620 97417660 -24426196 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1328 327 209 336 28 chr11 97417664 97417807 -24426049 - ID_B1 SINE B4 -37 187 1 1 1328 344 250 14 46 chr11 97418237 97418361 -24425495 - B1F SINE Alu 0 149 1 1 1328 450 0 0 0 chr11 97419184 97419234 -24424622 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1328 219 357 47 16 chr11 97421748 97421876 -24421980 + MIRc SINE MIR 22 153 -115 1 1328 378 140 11 23 chr11 97422299 97422387 -24421469 + GA-rich Low_complexity Low_complexity 3 89 0 1 1328 371 215 139 51 chr11 97422772 97422783 -24421073 + B1F2 SINE Alu 1 144 0 1 1328 436 244 107 16 chr11 97422783 97422904 -24420952 + ID_B1 SINE B4 91 222 -2 1 1328 573 140 32 0 chr11 97422912 97423005 -24420851 + B3 SINE B2 2 97 -119 1 1328 608 146 0 37 chr11 97423536 97423643 -24420213 + B2_Mm2 SINE B2 2 104 -91 1 1328 361 290 73 56 chr11 97423673 97423852 -24420004 + ID_B1 SINE B4 41 222 -2 1 1328 379 267 79 58 chr11 97424011 97424150 -24419706 - MIRb SINE MIR -31 237 96 1 1328 198 150 0 0 chr11 97424909 97424949 -24418907 + (C)n Simple_repeat Simple_repeat 1 40 0 1 1328 22 0 0 0 chr11 97425522 97425544 -24418312 + GC_rich Low_complexity Low_complexity 1 22 0 1 1328 187 356 96 0 chr11 97425900 97426004 -24417852 + L3b LINE CR1 243 356 -126 1 1328 248 152 0 21 chr11 97426467 97426514 -24417342 + L3 LINE CR1 4337 4382 -107 1 1328 329 351 77 7 chr11 97427047 97427210 -24416646 - MIRc SINE MIR -81 187 15 1 1328 241 338 0 0 chr11 97427776 97427856 -24416000 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1328 231 36 0 0 chr11 97429567 97429595 -24414261 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1328 293 304 26 18 chr11 97430482 97430596 -24413260 - MIR3 SINE MIR -15 193 79 1 1328 222 354 22 65 chr11 97430802 97430941 -24412915 - L3b LINE CR1 -188 294 162 1 1328 180 337 35 24 chr11 97431185 97431270 -24412586 - L3b LINE CR1 -194 288 203 1 1328 180 211 0 71 chr11 97431393 97431449 -24412407 + MIRc SINE MIR 38 89 -179 1 1328 297 260 0 0 chr11 97431527 97431631 -24412225 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 1328 452 225 130 0 chr11 97432102 97432240 -24411616 - MIR3 SINE MIR -16 192 37 1 1328 186 43 0 0 chr11 97432437 97432460 -24411396 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 1328 297 0 0 0 chr11 97432568 97432601 -24411255 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1328 200 304 0 12 chr11 97432809 97432889 -24410967 + GA-rich Low_complexity Low_complexity 1 79 0 1 1328 278 98 20 0 chr11 97433083 97433134 -24410722 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 1 1328 227 179 53 18 chr11 97434804 97434861 -24408995 - MIR SINE MIR -130 132 74 1 1328 214 226 0 36 chr11 97435916 97435971 -24407885 + C-rich Low_complexity Low_complexity 1 53 0 1 1328 46 19 0 0 chr11 97436146 97436199 -24407657 + GC_rich Low_complexity Low_complexity 1 53 0 1 1328 38 0 0 0 chr11 97436303 97436341 -24407515 + GC_rich Low_complexity Low_complexity 1 38 0 1 1328 210 198 0 85 chr11 97436408 97436502 -24407354 + (CGGG)n Simple_repeat Simple_repeat 1 86 0 1 1328 198 191 0 0 chr11 97436525 97436572 -24407284 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1328 265 304 66 86 chr11 97438370 97438388 -24405468 + ID_B1 SINE B4 74 221 -3 1 1328 474 248 53 30 chr11 97438388 97438521 -24405335 + B1_Mur1 SINE Alu 14 149 0 1 1328 742 127 175 0 chr11 97438903 97439029 -24404827 + B1_Mus1 SINE Alu 1 148 0 1 1328 237 297 52 43 chr11 97439249 97439365 -24404491 - PB1D10 SINE Alu 0 117 1 1 1328 225 240 20 0 chr11 97439410 97439460 -24404396 - tRNA-Ala-GCA tRNA tRNA -14 61 11 1 1328 333 0 0 0 chr11 97439495 97439532 -24404324 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1328 222 297 16 0 chr11 97440907 97440971 -24402885 - MER5A DNA MER1_type -124 65 1 1 1328 180 0 0 0 chr11 97441329 97441349 -24402507 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1328 217 276 0 17 chr11 97441397 97441456 -24402400 + PB1D10 SINE Alu 24 81 -36 1 1328 1203 56 0 0 chr11 97441456 97441598 -24402258 + B1_Mus2 SINE Alu 1 142 -5 1 1328 24 0 0 0 chr11 97441598 97441622 -24402234 + AT_rich Low_complexity Low_complexity 1 24 0 1 1328 207 0 0 0 chr11 97441625 97441648 -24402208 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 1 1328 236 300 6 23 chr11 97441740 97441849 -24402007 + GA-rich Low_complexity Low_complexity 1 107 0 1 1328 350 299 116 39 chr11 97442312 97442493 -24401363 + L1MB7 LINE L1 5761 5955 -229 1 1328 1198 54 0 13 chr11 97442650 97442799 -24401057 - B1_Mus1 SINE Alu -1 147 1 1 1328 250 170 38 0 chr11 97442833 97442886 -24400970 + L1MB5 LINE L1 6120 6174 0 1 1328 373 270 54 0 chr11 97442903 97442914 -24400942 + B1F1 SINE Alu 9 74 -75 1 1328 419 266 11 0 chr11 97442914 97443008 -24400848 + ID_B1 SINE B4 103 197 -27 1 1328 798 96 0 0 chr11 97443014 97443149 -24400707 + (TC)n Simple_repeat Simple_repeat 2 136 0 1 1328 698 71 0 10 chr11 97443150 97443249 -24400607 - B1_Mus1 SINE Alu -12 136 39 1 1328 279 289 63 56 chr11 97443173 97443316 -24400540 - MT2B LTR ERVL -337 264 121 1 1328 700 221 40 0 chr11 97443678 97443827 -24400029 + RSINE1 SINE B4 11 165 0 1 1328 501 273 77 108 chr11 97443845 97444067 -24399789 + B3 SINE B2 2 216 0 1 1328 721 154 58 7 chr11 97444244 97444381 -24399475 - B1_Mus1 SINE Alu 0 148 5 1 1328 510 96 0 0 chr11 97444396 97444469 -24399387 + (TCC)n Simple_repeat Simple_repeat 3 75 0 1 1328 588 298 112 0 chr11 97444479 97444640 -24399216 - B3 SINE B2 -23 193 15 1 1328 423 0 0 0 chr11 97444648 97444695 -24399161 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1328 189 0 0 0 chr11 97444695 97444715 -24399141 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1 1328 638 218 0 43 chr11 97444726 97444865 -24398991 - ID_B1 SINE B4 -5 219 87 1 1328 231 303 0 156 chr11 97444865 97444906 -24398950 + YREP_Mm Unknown Unknown 182 333 -1479 1 1328 608 273 9 88 chr11 97444914 97445131 -24398725 + ID_B1 SINE B4 24 223 -1 1 1328 786 144 7 28 chr11 97444992 97445135 -24398721 + B1_Mus1 SINE Alu 8 147 -1 1 1328 342 0 0 0 chr11 97445679 97445717 -24398139 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1328 468 0 0 0 chr11 97445717 97445768 -24398088 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1328 506 249 165 17 chr11 97446036 97446212 -24397644 + MER21B LTR ERV1 274 475 -388 1 1328 302 173 58 69 chr11 97446219 97446231 -24397625 - HAL1-3A_ME LINE L1 -797 2061 2049 1 1328 675 230 190 6 chr11 97446231 97446410 -24397446 - B3 SINE B2 0 216 5 1 1328 302 173 58 69 chr11 97446410 97446484 -24397372 - HAL1-3A_ME LINE L1 -810 2048 1977 1 1328 599 286 64 57 chr11 97446533 97446815 -24397041 - B4A SINE B4 -8 284 1 1 1328 358 265 56 42 chr11 97446947 97446975 -24396881 + B1F1 SINE Alu 5 144 -1 1 1328 541 227 0 0 chr11 97446975 97447085 -24396771 + ID_B1 SINE B4 115 224 0 1 1328 392 126 0 11 chr11 97447089 97447177 -24396679 + (TAAA)n Simple_repeat Simple_repeat 1 87 0 1 1328 376 291 70 50 chr11 97447194 97447393 -24396463 + MER21B LTR ERV1 477 679 -184 1 1328 180 233 187 37 chr11 97447445 97447579 -24396277 + L2c LINE L2 3010 3163 -224 1 1328 1041 183 9 80 chr11 97447683 97447909 -24395947 - B3 SINE B2 -6 210 1 1 1328 180 77 0 0 chr11 97447952 97447978 -24395878 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 1328 753 197 0 7 chr11 97448304 97448452 -24395404 - B1_Mur1 SINE Alu 0 149 3 1 1328 252 197 229 0 chr11 97448473 97448534 -24395322 - ID2 SINE ID -4 79 5 1 1328 280 233 8 149 chr11 97448743 97448864 -24394992 + MT2B LTR ERVL 154 257 -344 1 1328 762 110 0 52 chr11 97448761 97448895 -24394961 + B1_Mur4 SINE Alu 10 136 -14 1 1328 591 60 0 0 chr11 97448895 97448979 -24394877 + (GA)n Simple_repeat Simple_repeat 2 85 0 1 1328 218 200 0 0 chr11 97449345 97449385 -24394471 + CT-rich Low_complexity Low_complexity 3 42 0 1 1328 459 141 0 0 chr11 97449406 97449484 -24394372 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 1 1328 1026 88 7 20 chr11 97449484 97449634 -24394222 - B1_Mus1 SINE Alu 0 148 1 1 1328 1123 173 85 15 chr11 97449662 97449932 -24393924 + Lx9 LINE L1 7350 7638 -6 1 1328 1049 182 9 41 chr11 97449948 97450166 -24393690 - B3 SINE B2 -5 211 1 1 1328 1267 101 21 0 chr11 97450214 97450402 -24393454 - B2_Mm2 SINE B2 -3 192 1 1 1328 966 62 0 127 chr11 97451025 97451190 -24392666 + B1_Mus1 SINE Alu 5 148 0 1 1328 210 102 16 48 chr11 97451198 97451260 -24392596 + A-rich Low_complexity Low_complexity 1 60 0 1 1328 261 0 0 0 chr11 97451402 97451431 -24392425 + (CAGGA)n Simple_repeat Simple_repeat 3 31 0 1 1328 288 0 0 0 chr11 97452176 97452208 -24391648 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1328 261 0 0 0 chr11 97452208 97452236 -24391620 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1328 258 32 0 0 chr11 97452339 97452370 -24391486 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1328 1399 54 16 5 chr11 97452432 97452619 -24391237 - B2_Mm2 SINE B2 -4 191 3 1 1328 294 322 8 63 chr11 97452620 97452746 -24391110 - RSINE1 SINE B4 -44 121 3 1 1328 551 196 104 15 chr11 97452877 97453012 -24390844 - B1_Mus1 SINE Alu 0 148 2 1 1328 465 300 31 0 chr11 97453033 97453163 -24390693 - ID_B1 SINE B4 -71 153 20 1 1328 434 238 238 0 chr11 97453197 97453369 -24390487 - B3 SINE B2 0 216 4 1 1328 306 314 9 79 chr11 97453806 97453920 -24389936 + RSINE1 SINE B4 1 106 -59 1 1328 216 0 0 0 chr11 97453954 97453978 -24389878 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1 1328 506 263 88 0 chr11 97454031 97454045 -24389811 + B1F SINE Alu 1 149 0 1 1328 690 211 0 0 chr11 97454045 97454168 -24389688 + ID_B1 SINE B4 102 224 0 1 1328 206 336 9 53 chr11 97454326 97454382 -24389474 - MIR SINE MIR -146 116 63 1 1328 2409 156 26 105 chr11 97454382 97454784 -24389072 + RLTR11A LTR ERVK 1 379 -149 1 1328 897 94 138 0 chr11 97454784 97454943 -24388913 + B2_Mm2 SINE B2 1 181 -14 1 1328 2409 156 26 105 chr11 97454943 97455113 -24388743 + RLTR11A LTR ERVK 380 528 0 1 1328 206 336 9 53 chr11 97455113 97455169 -24388687 - MIR SINE MIR -200 62 10 1 1328 887 119 13 47 chr11 97455215 97455365 -24388491 - B1_Mur4 SINE Alu -5 145 1 1 1328 2693 171 19 11 chr11 97455436 97455958 -24387898 + RLTR12B LTR ERVK 3 528 0 1 1328 243 323 50 0 chr11 97455975 97456074 -24387782 - L2a LINE L2 -7 3419 3316 1 1328 578 219 0 8 chr11 97456133 97456253 -24387603 + Lx5 LINE L1 6730 6848 -202 1 1328 1275 79 11 0 chr11 97456436 97456613 -24387243 + B2_Mm1t SINE B2 1 179 -14 1 1328 319 142 0 39 chr11 97456679 97456746 -24387110 + B2_Mm2 SINE B2 47 109 -107 1 1328 378 0 0 0 chr11 97456762 97456804 -24387052 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 1 1328 635 180 9 0 chr11 97456935 97457046 -24386810 + B1_Mus1 SINE Alu 2 113 -35 1 1328 377 68 54 0 chr11 97457395 97457469 -24386387 - RMER17C LTR ERVK -133 277 200 1 1328 821 236 26 10 chr11 97457590 97457783 -24386073 + B3A SINE B2 3 198 0 1 1328 754 187 154 5 chr11 97457800 97457988 -24385868 + B3 SINE B2 1 216 0 1 1328 880 97 66 15 chr11 97458026 97458162 -24385694 + B1_Mus1 SINE Alu 5 147 -1 1 1328 1803 185 97 10 chr11 97458178 97458571 -24385285 + Lx5 LINE L1 6624 7050 0 1 1328 222 37 0 0 chr11 97458617 97458644 -24385212 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1328 809 29 0 0 chr11 97458815 97458919 -24384937 - B1_Mus2 SINE Alu 0 147 44 1 1328 548 150 54 45 chr11 97458951 97459045 -24384811 + B1_Mur4 SINE Alu 37 136 -14 1 1328 483 18 0 0 chr11 97459045 97459101 -24384755 + (CATA)n Simple_repeat Simple_repeat 3 58 0 1 1328 548 150 54 45 chr11 97459101 97459118 -24384738 + B1_Mur4 SINE Alu 137 149 -1 1 1328 320 316 48 54 chr11 97459113 97459133 -24384723 + ID_B1 SINE B4 78 223 -1 1 1328 620 197 55 0 chr11 97459133 97459260 -24384596 + B1_Mus2 SINE Alu 13 146 -1 1 1328 29 28 0 0 chr11 97459272 97459308 -24384548 + AT_rich Low_complexity Low_complexity 1 36 0 1 1328 1146 110 0 82 chr11 97459370 97459578 -24384278 - B2_Mm2 SINE B2 -4 191 1 1 1328 405 0 0 0 chr11 97459578 97459623 -24384233 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1328 324 216 144 19 chr11 97459625 97459660 -24384196 - RSINE1 SINE B4 -38 127 90 1 1328 1282 230 24 45 chr11 97459660 97460042 -24383814 + ORR1D1 LTR MaLR 1 374 0 1 1328 324 216 144 19 chr11 97460042 97460110 -24383746 - RSINE1 SINE B4 -76 89 11 1 1328 359 310 27 33 chr11 97460162 97460312 -24383544 - B4 SINE B4 -1 291 108 1 1328 269 315 54 9 chr11 97460324 97460436 -24383420 - B4 SINE B4 -172 120 4 1 1328 454 269 70 43 chr11 97460527 97460792 -24383064 + RLTR15 LTR ERVK 45 290 -69 1 1328 1171 41 7 0 chr11 97460806 97460952 -24382904 + B1_Mus1 SINE Alu 1 147 -1 1 1328 327 253 89 0 chr11 97461041 97461120 -24382736 - B1_Mur1 SINE Alu -25 124 39 1 1328 312 212 99 12 chr11 97461114 97461195 -24382661 - B1_Mus1 SINE Alu -55 93 6 1 1328 534 282 0 13 chr11 97461199 97461350 -24382506 - B1F SINE Alu 0 149 1 1 1328 322 286 0 0 chr11 97461371 97461441 -24382415 + PB1D10 SINE Alu 2 71 -46 1 1328 701 160 0 25 chr11 97461448 97461570 -24382286 + B1_Mur4 SINE Alu 32 150 0 1 1328 1309 90 26 0 chr11 97461604 97461793 -24382063 + B2_Mm2 SINE B2 2 195 0 1 1328 563 292 24 47 chr11 97461835 97462004 -24381852 + RSINE1 SINE B4 1 165 0 1 1328 561 211 23 11 chr11 97462005 97462182 -24381674 + (CATA)n Simple_repeat Simple_repeat 2 180 0 1 1328 21 0 0 0 chr11 97462248 97462269 -24381587 + AT_rich Low_complexity Low_complexity 1 21 0 1 1328 270 0 0 0 chr11 97462284 97462314 -24381542 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1328 691 244 32 0 chr11 97462317 97462473 -24381383 - B3A SINE B2 -37 161 1 1 1328 453 333 53 29 chr11 97462584 97462865 -24380991 + L1M5 LINE L1 4796 5083 -1063 1 1328 300 200 0 148 chr11 97462974 97463062 -24380794 + PB1D10 SINE Alu 43 117 0 1 1328 501 292 0 68 chr11 97463066 97463213 -24380643 + ID_B1 SINE B4 80 216 -8 1 1328 274 227 19 85 chr11 97463226 97463332 -24380524 - L1MEc LINE L1 -6281 119 21 1 1328 739 8 67 0 chr11 97463381 97463501 -24380355 + (TC)n Simple_repeat Simple_repeat 2 129 0 1 1328 567 266 0 0 chr11 97463551 97463690 -24380166 - ID_B1 SINE B4 -4 220 82 1 1328 572 186 0 53 chr11 97464172 97464303 -24379553 - B1_Mur2 SINE Alu 0 149 26 1 1328 235 241 150 131 chr11 97464178 97464331 -24379525 - B4 SINE B4 -69 223 68 1 1328 267 373 42 0 chr11 97464488 97464606 -24379250 + LTR16B1 LTR ERVL 117 239 -241 1 1328 256 275 0 0 chr11 97464979 97465048 -24378808 + C-rich Low_complexity Low_complexity 1 69 0 1 1328 239 224 0 50 chr11 97465063 97465143 -24378713 - ORR1E LTR MaLR -212 147 72 1 1328 591 147 0 0 chr11 97465522 97465624 -24378232 + (TTTC)n Simple_repeat Simple_repeat 1 102 0 1 1328 494 194 0 162 chr11 97465624 97465772 -24378084 - B1_Mus2 SINE Alu 0 147 24 1 1328 291 190 35 0 chr11 97465758 97465816 -24378040 - ID2 SINE ID -10 73 14 1 1328 804 237 41 41 chr11 97465945 97466165 -24377691 - ID_B1 SINE B4 -3 221 2 1 1328 307 225 56 0 chr11 97466408 97466479 -24377377 - ORR1E LTR MaLR -284 75 1 1 1328 1167 70 47 0 chr11 97466539 97466711 -24377145 + B2_Mm2 SINE B2 11 190 -5 1 1328 439 107 535 14 chr11 97466716 97466858 -24376998 - B3 SINE B2 0 216 1 1 1328 307 267 56 19 chr11 97466902 97467009 -24376847 - ID_B1 SINE B4 -31 193 83 1 1328 811 158 7 0 chr11 97467187 97467326 -24376530 + B1_Mus1 SINE Alu 1 140 -8 1 1328 434 275 56 35 chr11 97467365 97467508 -24376348 + B1F SINE Alu 3 148 -1 1 1328 380 266 18 9 chr11 97467865 97467880 -24375976 + ID SINE ID 66 81 -143 1 1328 426 272 26 0 chr11 97467880 97467994 -24375862 + PB1D10 SINE Alu 1 117 0 1 1328 201 318 0 16 chr11 97468010 97468074 -24375782 - MIRb SINE MIR -77 191 129 1 1328 205 276 63 84 chr11 97468587 97468682 -24375174 - L2c LINE L2 0 3387 3295 1 1328 286 254 88 56 chr11 97468796 97468921 -24374935 - MER20 DNA MER1_type -84 135 7 1 1328 299 291 46 118 chr11 97468932 97468997 -24374859 + ID_B1 SINE B4 82 148 -76 1 1328 1176 41 0 0 chr11 97468997 97469144 -24374712 + B1_Mm SINE Alu 1 147 0 1 1328 299 291 46 118 chr11 97469144 97469230 -24374626 + ID_B1 SINE B4 149 222 -2 1 1328 853 115 42 21 chr11 97469363 97469505 -24374351 - B1_Mur4 SINE Alu -5 145 1 1 1328 787 165 0 14 chr11 97471852 97471993 -24371863 - B1_Mur1 SINE Alu -2 147 9 1 1328 508 231 64 108 chr11 97473199 97473403 -24370453 - B3A SINE B2 0 198 4 1 1328 599 263 18 11 chr11 97473476 97473660 -24370196 - B3 SINE B2 0 198 1 1 1328 412 171 0 38 chr11 97473672 97473751 -24370105 - ID_B1 SINE B4 -3 221 146 1 1328 480 252 0 45 chr11 97473720 97473853 -24370003 - B1F SINE Alu -22 127 1 1 1328 583 167 150 0 chr11 97473928 97474048 -24369808 + B1_Mur4 SINE Alu 12 149 -1 1 1328 32 26 0 0 chr11 97474582 97474621 -24369235 + AT_rich Low_complexity Low_complexity 1 39 0 1 1328 636 151 18 75 chr11 97474628 97474779 -24369077 - B1_Mur2 SINE Alu 0 149 2 1 1328 741 245 4 62 chr11 97474780 97475004 -24368852 - B3A SINE B2 -4 212 2 1 1328 213 146 0 0 chr11 97475017 97475065 -24368791 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 1 1328 1126 68 14 0 chr11 97475080 97475226 -24368630 - B1_Mus1 SINE Alu 0 148 1 1 1328 409 280 0 53 chr11 97475260 97475373 -24368483 - RSINE1 SINE B4 -4 161 55 1 1328 371 253 42 0 chr11 97475429 97475524 -24368332 - PB1D10 SINE Alu -9 108 10 1 1328 1103 107 6 0 chr11 97475550 97475709 -24368147 + B2_Mm1a SINE B2 1 160 -33 1 1328 369 0 0 0 chr11 97475709 97475750 -24368106 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 1328 393 301 24 31 chr11 97475764 97475891 -24367965 + ID_B1 SINE B4 88 213 -11 1 1328 1002 83 0 0 chr11 97475947 97476080 -24367776 + B1_Mus1 SINE Alu 2 134 -14 1 1328 2667 155 48 59 chr11 97476567 97477108 -24366748 - RMER15 LTR ERVL 0 575 41 1 1328 1037 127 0 0 chr11 97477108 97477257 -24366599 + B2_Mm2 SINE B2 1 158 -37 1 1328 255 93 0 0 chr11 97477266 97477309 -24366547 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 1 1328 225 297 54 0 chr11 97477309 97477373 -24366483 + B4 SINE B4 82 149 -143 1 1328 274 207 28 0 chr11 97477316 97477407 -24366449 + B1_Mur4 SINE Alu 5 104 -45 1 1328 353 218 51 0 chr11 97477429 97477507 -24366349 + B1_Mur4 SINE Alu 68 149 -1 1 1328 693 239 24 20 chr11 97477492 97477664 -24366192 + ID_B1 SINE B4 66 232 -60 1 1328 429 270 7 5 chr11 97477666 97477779 -24366077 + RSINE1 SINE B4 1 113 -179 1 1328 21 0 0 0 chr11 97477796 97477817 -24366039 + AT_rich Low_complexity Low_complexity 1 21 0 1 1328 681 13 0 0 chr11 97478295 97478373 -24365483 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 1328 342 225 25 0 chr11 97478952 97479032 -24364824 - ID2 SINE ID 0 83 2 1 1328 860 149 0 39 chr11 97479111 97479265 -24364591 - B1_Mur4 SINE Alu 0 150 3 1 1328 228 132 0 0 chr11 97479266 97479304 -24364552 - B2_Mm2 SINE B2 -155 40 3 1 1328 307 338 84 45 chr11 97479340 97479495 -24364361 - B3A SINE B2 0 198 38 1 1328 1044 235 117 56 chr11 97479495 97479856 -24364000 + MTC LTR MaLR 1 375 -46 1 1328 363 246 81 73 chr11 97479968 97480104 -24363752 - B1F2 SINE Alu -12 137 1 1 1328 392 230 11 11 chr11 97480327 97480415 -24363441 + ID_B1 SINE B4 137 224 0 1 1328 197 59 59 0 chr11 97480596 97480630 -24363226 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1328 255 359 22 0 chr11 97480835 97480927 -24362929 - MLT1J1 LTR MaLR -279 165 72 1 1328 963 232 175 49 chr11 97481549 97481774 -24362082 - MTD LTR MaLR -16 403 111 1 1328 1529 52 0 0 chr11 97481774 97481966 -24361890 + B2_Mm1a SINE B2 2 193 0 1 1328 963 234 249 39 chr11 97481966 97482086 -24361770 - MTD LTR MaLR -309 110 1 1 1328 411 266 0 0 chr11 97482251 97482607 -24361249 + (CA)n Simple_repeat Simple_repeat 1 356 0 1 1328 393 267 0 0 chr11 97482661 97482837 -24361019 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1328 393 267 0 0 chr11 97482891 97483067 -24360789 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1328 267 301 0 0 chr11 97483081 97483257 -24360599 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1328 401 284 70 16 chr11 97483408 97483423 -24360433 + B4 SINE B4 70 204 -87 1 1328 618 195 18 0 chr11 97483423 97483536 -24360320 + B1_Mur1 SINE Alu 1 115 -34 1 1328 219 36 0 0 chr11 97483543 97483571 -24360285 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1328 277 164 73 15 chr11 97483676 97483744 -24360112 + MIRc SINE MIR 68 139 -129 1 1328 297 0 0 0 chr11 97484197 97484230 -24359626 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1328 582 207 124 0 chr11 97484265 97484410 -24359446 - RSINE1 SINE B4 0 165 3 1 1328 219 69 0 0 chr11 97484422 97484451 -24359405 + (TTC)n Simple_repeat Simple_repeat 2 30 0 1 1328 1117 48 7 7 chr11 97484458 97484605 -24359251 - B1_Mm SINE Alu 0 147 1 1 1328 490 258 7 36 chr11 97485000 97485137 -24358719 + RSINE1 SINE B4 2 134 -31 1 1328 227 250 0 0 chr11 97485600 97485652 -24358204 + B1F1 SINE Alu 10 61 -88 1 1328 699 146 60 23 chr11 97485704 97485837 -24358019 + B1_Mus2 SINE Alu 10 147 0 1 1328 329 236 157 0 chr11 97486501 97486590 -24357266 + ID_B1 SINE B4 108 210 -14 1 1328 231 125 0 0 chr11 97486601 97486641 -24357215 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1328 478 292 8 0 chr11 97486994 97487131 -24356725 + B1F2 SINE Alu 5 142 -8 1 1328 216 0 0 0 chr11 97487352 97487376 -24356480 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1328 26 64 0 0 chr11 97490946 97490993 -24352863 + GC_rich Low_complexity Low_complexity 1 47 0 1 1328 252 247 47 12 chr11 97492223 97492309 -24351547 + LTR68 LTR ERV1 198 286 -454 1 1328 1463 53 16 0 chr11 97493744 97493932 -24349924 - B2_Mm2 SINE B2 -4 191 1 1 1328 305 266 0 25 chr11 97494044 97494125 -24349731 - PB1D10 SINE Alu -30 87 9 1 1328 220 273 32 74 chr11 97494045 97494140 -24349716 - B4A SINE B4 -119 173 83 1 1328 1094 55 7 14 chr11 97494293 97494440 -24349416 - B1_Mus1 SINE Alu 0 148 3 1 1328 1468 48 11 0 chr11 97494452 97494640 -24349216 - B2_Mm1a SINE B2 -3 190 1 1 1328 268 317 9 56 chr11 97494673 97494780 -24349076 - B4 SINE B4 -65 227 126 1 1328 663 142 17 17 chr11 97495068 97495208 -24348648 + B1_Mus2 SINE Alu 8 147 -1 1 1328 432 55 0 0 chr11 97495208 97495263 -24348593 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 1 1328 225 0 0 0 chr11 97495267 97495292 -24348564 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 1 1328 256 170 85 0 chr11 97495372 97495419 -24348437 + ID2 SINE ID 31 81 -2 1 1328 247 225 83 14 chr11 97495419 97495440 -24348416 + B4 SINE B4 32 104 -188 1 1328 289 327 109 0 chr11 97495423 97495533 -24348323 + RSINE1 SINE B4 5 126 -39 1 1328 216 0 0 0 chr11 97495550 97495574 -24348282 + (GGA)n Simple_repeat Simple_repeat 1 24 0 1 1328 530 287 7 27 chr11 97495574 97495721 -24348135 + ID_B1 SINE B4 79 222 -2 1 1328 1319 77 22 0 chr11 97495725 97495907 -24347949 - B2_Mm2 SINE B2 -9 186 1 1 1328 1161 41 7 0 chr11 97495940 97496085 -24347771 + B1_Mus1 SINE Alu 3 148 0 1 1328 661 269 116 46 chr11 97496116 97496443 -24347413 - L1MB8 LINE L1 -155 6023 5674 1 1328 295 258 0 15 chr11 97496443 97496510 -24347346 + ID4 SINE ID 12 77 -6 1 1328 213 108 0 0 chr11 97496510 97496547 -24347309 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1328 732 291 34 54 chr11 97496648 97496946 -24346910 + B4A SINE B4 1 292 0 1 1328 348 302 45 23 chr11 97497208 97497340 -24346516 + B1F SINE Alu 2 136 -13 1 1328 386 187 0 11 chr11 97497551 97497643 -24346213 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1328 207 234 21 0 chr11 97497686 97497733 -24346123 - MIR SINE MIR -181 81 34 1 1328 341 283 0 0 chr11 97497751 97497850 -24346006 + PB1D10 SINE Alu 3 101 -16 1 1328 292 304 0 0 chr11 97497854 97497923 -24345933 + ID SINE ID 12 80 -144 1 1328 1077 98 92 0 chr11 97497966 97498139 -24345717 - B2_Mm2 SINE B2 -5 190 2 1 1328 346 272 0 0 chr11 97498169 97498250 -24345606 + B1F SINE Alu 15 95 -54 1 1328 534 129 0 0 chr11 97498255 97498340 -24345516 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1328 498 161 235 26 chr11 97498344 97498459 -24345397 + B1_Mus2 SINE Alu 9 147 0 1 1328 1278 73 17 6 chr11 97498555 97498734 -24345122 + B2_Mm2 SINE B2 1 181 -14 1 1328 1037 58 58 0 chr11 97498753 97498891 -24344965 - B1_Mm SINE Alu -1 146 1 1 1328 21 36 0 0 chr11 97498896 97498924 -24344932 + AT_rich Low_complexity Low_complexity 1 28 0 1 1328 864 204 19 29 chr11 97499021 97499228 -24344628 - B3 SINE B2 -10 206 2 1 1328 520 286 8 0 chr11 97499238 97499371 -24344485 - ID_B1 SINE B4 -4 220 87 1 1328 532 205 88 36 chr11 97499423 97499560 -24344296 + B1_Mur2 SINE Alu 5 148 -1 1 1328 661 63 0 0 chr11 97499795 97499890 -24343966 - B1_Mus1 SINE Alu -52 96 2 1 1328 463 200 52 43 chr11 97499890 97499917 -24343939 - B4 SINE B4 -201 91 64 1 1328 508 167 0 32 chr11 97499907 97500000 -24343856 - B3 SINE B2 -5 211 122 1 1328 564 172 0 0 chr11 97500001 97500100 -24343756 - B3 SINE B2 -96 120 22 1 1328 387 60 0 0 chr11 97500358 97500408 -24343448 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1328 318 225 0 98 chr11 97500412 97500575 -24343281 + (CATG)n Simple_repeat Simple_repeat 4 150 0 3 1328 322 333 0 24 chr11 97500617 97500786 -24343070 + (TG)n Simple_repeat Simple_repeat 1 165 0 4 1328 257 262 5 97 chr11 97500796 97500927 -24342929 + (CATG)n Simple_repeat Simple_repeat 1 122 0 5 1328 261 0 0 0 chr11 97500927 97500956 -24342900 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1328 257 262 5 97 chr11 97500956 97501010 -24342846 + (CATG)n Simple_repeat Simple_repeat 2 48 0 7 1328 734 168 6 0 chr11 97501012 97501173 -24342683 + (TG)n Simple_repeat Simple_repeat 1 162 0 8 1328 309 26 0 0 chr11 97501231 97501269 -24342587 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1328 289 262 6 80 chr11 97501273 97501435 -24342421 + (CATG)n Simple_repeat Simple_repeat 1 150 0 9 1328 548 140 0 9 chr11 97501437 97501545 -24342311 + (TG)n Simple_repeat Simple_repeat 1 107 0 1 1328 248 283 5 85 chr11 97501568 97501757 -24342099 + (CATG)n Simple_repeat Simple_repeat 1 174 0 1 1328 403 213 7 7 chr11 97501759 97501896 -24341960 + (TG)n Simple_repeat Simple_repeat 1 137 0 1 1328 242 206 0 14 chr11 97501957 97502031 -24341825 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1328 396 0 0 0 chr11 97502133 97502177 -24341679 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1328 287 292 0 68 chr11 97502221 97502302 -24341554 + (CATG)n Simple_repeat Simple_repeat 4 78 0 1 1328 315 0 0 0 chr11 97502302 97502337 -24341519 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1328 287 292 0 68 chr11 97502337 97502398 -24341458 + (CATG)n Simple_repeat Simple_repeat 4 59 0 1 1328 198 71 0 0 chr11 97502398 97502426 -24341430 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1328 287 292 0 68 chr11 97502426 97502510 -24341346 + (CATG)n Simple_repeat Simple_repeat 1 78 0 1 1328 610 176 14 0 chr11 97502532 97502680 -24341176 + (TG)n Simple_repeat Simple_repeat 2 151 0 1 1328 423 0 0 0 chr11 97502736 97502783 -24341073 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1328 309 246 0 15 chr11 97502850 97502916 -24340940 - ID_B1 SINE B4 -48 176 112 2 1328 239 301 103 75 chr11 97503044 97503472 -24340384 + L2 LINE L2 1803 2242 -1177 2 1328 965 237 28 14 chr11 97503860 97504078 -24339778 - ID_B1 SINE B4 -2 222 2 2 1328 366 200 13 26 chr11 97504088 97504165 -24339691 - ID4 SINE ID -4 79 4 2 1328 1101 209 14 5 chr11 97504172 97504379 -24339477 - B3 SINE B2 -7 209 1 2 1328 478 234 0 70 chr11 97504795 97504910 -24338946 + PB1D10 SINE Alu 6 112 -5 2 1328 443 289 59 7 chr11 97504915 97505051 -24338805 + ID_B1 SINE B4 80 222 -2 2 1328 505 281 0 29 chr11 97505058 97505197 -24338659 + B1_Mur2 SINE Alu 6 140 -9 2 1328 533 207 90 0 chr11 97505201 97505312 -24338544 + B1_Mus2 SINE Alu 10 130 -17 2 1328 820 198 85 73 chr11 97505501 97505773 -24338083 - RMER1C Other Other -15 1327 1053 2 1328 237 65 0 0 chr11 97505773 97505804 -24338052 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3 1328 1192 75 0 0 chr11 97505806 97505953 -24337903 - B1_Mus1 SINE Alu 0 148 2 3 1328 41 48 0 0 chr11 97506011 97506073 -24337783 + AT_rich Low_complexity Low_complexity 1 62 0 3 1328 896 197 0 0 chr11 97506073 97506220 -24337636 + B1_Mus1 SINE Alu 2 148 0 3 1328 483 289 40 50 chr11 97506232 97506432 -24337424 - B3A SINE B2 0 198 1 3 1328 1344 67 50 6 chr11 97506816 97506996 -24336860 + B2_Mm2 SINE B2 2 189 -6 3 1328 735 276 5 31 chr11 97507208 97507233 -24336623 - B3 SINE B2 -30 186 164 3 1328 639 60 0 0 chr11 97507233 97507317 -24336539 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1328 735 276 5 31 chr11 97507317 97507482 -24336374 - B3 SINE B2 -53 163 1 3 1328 551 263 14 35 chr11 97507489 97507631 -24336225 - B1_Mur1 SINE Alu -8 141 3 3 1328 1331 115 16 5 chr11 97507644 97507836 -24336020 - B2_Mm2 SINE B2 -1 194 1 3 1328 36 23 0 0 chr11 97507844 97507887 -24335969 + AT_rich Low_complexity Low_complexity 1 43 0 4 1328 609 182 0 0 chr11 97507942 97508041 -24335815 + B2_Mm2 SINE B2 2 100 -95 4 1328 1442 83 10 5 chr11 97508077 97508271 -24335585 + B2_Mm2 SINE B2 1 195 0 4 1328 1160 81 0 20 chr11 97508350 97508501 -24335355 + B1_Mus1 SINE Alu 1 148 0 4 1328 294 29 0 0 chr11 97508558 97508593 -24335263 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 4 1328 286 75 0 0 chr11 97508593 97508633 -24335223 - B1_Mus1 SINE Alu -108 40 1 4 1328 426 211 10 50 chr11 97508645 97508745 -24335111 + ID_B1 SINE B4 129 224 0 4 1328 836 60 171 0 chr11 97508814 97508931 -24334925 - B1_Mm SINE Alu -10 137 1 4 1328 333 68 0 0 chr11 97508931 97508975 -24334881 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1328 890 18 0 0 chr11 97508975 97509087 -24334769 - B1_Mus2 SINE Alu 0 147 36 4 1328 288 158 74 62 chr11 97509018 97509099 -24334757 - RLTR25B LTR ERVK -519 509 428 5 1328 1647 16 32 0 chr11 97509112 97509298 -24334558 - B2_Mm1a SINE B2 0 193 2 5 1328 1419 78 16 10 chr11 97509299 97509493 -24334363 - B2_Mm2 SINE B2 0 195 1 5 1328 314 233 0 151 chr11 97509495 97509601 -24334255 + B3A SINE B2 23 112 -83 5 1328 699 228 177 6 chr11 97509662 97509843 -24334013 + B3 SINE B2 5 216 0 5 1328 437 250 31 62 chr11 97509926 97510054 -24333802 - B1F2 SINE Alu 0 149 26 5 1328 1102 48 0 0 chr11 97510102 97510247 -24333609 - B1_Mus1 SINE Alu 0 148 4 5 1328 410 180 16 126 chr11 97510137 97510264 -24333592 - MT2B LTR ERVL -337 264 152 5 1328 543 261 21 7 chr11 97510963 97511106 -24332750 + B1F1 SINE Alu 3 147 -2 5 1328 1040 43 0 14 chr11 97511114 97511257 -24332599 + B1_Mus2 SINE Alu 6 146 -1 5 1328 312 91 0 0 chr11 97511264 97511308 -24332548 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1328 322 167 17 0 chr11 97512006 97512066 -24331790 + ORR1C2 LTR MaLR 1 61 -323 6 1328 342 0 0 0 chr11 97512074 97512112 -24331744 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 6 1328 914 143 111 18 chr11 97512113 97512147 -24331709 + ORR1C2 LTR MaLR 196 229 -155 6 1328 315 0 0 0 chr11 97512147 97512182 -24331674 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 6 1328 914 143 111 18 chr11 97512182 97512318 -24331538 + ORR1C2 LTR MaLR 230 380 -4 6 1328 208 178 0 22 chr11 97512602 97512648 -24331208 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1328 221 75 25 0 chr11 97512738 97512778 -24331078 + (ACTG)n Simple_repeat Simple_repeat 1 41 0 6 1328 201 129 0 0 chr11 97512883 97512914 -24330942 + (CCA)n Simple_repeat Simple_repeat 1 31 0 6 1328 969 250 49 0 chr11 97512918 97513122 -24330734 + B3 SINE B2 1 214 -2 6 1328 726 124 8 55 chr11 97513135 97513263 -24330593 - B1_Mus1 SINE Alu -14 134 13 6 1328 690 267 58 19 chr11 97513750 97513956 -24329900 + ID_B1 SINE B4 3 216 -8 6 1328 406 256 0 0 chr11 97513962 97514048 -24329808 - PB1D10 SINE Alu -3 114 29 7 1328 614 143 76 0 chr11 97514312 97514417 -24329439 - B3 SINE B2 -101 115 3 7 1328 586 164 98 105 chr11 97514443 97514561 -24329295 - B1_Mur4 SINE Alu -6 144 27 7 1328 3524 40 33 19 chr11 97514561 97514991 -24328865 + RLTR10C LTR ERVK 1 436 0 7 1328 586 164 98 105 chr11 97514991 97515015 -24328841 - B1_Mur4 SINE Alu -124 26 3 7 1328 304 298 64 0 chr11 97515169 97515263 -24328593 - ID_B1 SINE B4 -69 155 56 7 1328 406 298 40 0 chr11 97515243 97515367 -24328489 - B1F1 SINE Alu -5 144 16 7 1328 778 120 8 0 chr11 97515403 97515528 -24328328 - B1_Mur4 SINE Alu -11 139 14 7 1328 394 229 43 60 chr11 97515435 97515551 -24328305 - B4 SINE B4 -98 194 81 7 1328 409 292 9 9 chr11 97515545 97515659 -24328197 - PB1D10 SINE Alu -2 115 2 7 1328 239 309 15 0 chr11 97515599 97515667 -24328189 - B4 SINE B4 -145 147 79 7 1328 247 250 68 27 chr11 97515695 97515769 -24328087 + ID4_ SINE ID 1 77 -6 8 1328 369 276 15 38 chr11 97515939 97516088 -24327768 + B1F2 SINE Alu 1 146 -3 8 1328 219 253 21 126 chr11 97516125 97516216 -24327640 + B4A SINE B4 19 99 -193 8 1328 549 152 0 21 chr11 97516216 97516310 -24327546 + B2_Mm2 SINE B2 2 93 -102 8 1328 466 250 36 0 chr11 97516376 97516488 -24327368 + B4 SINE B4 81 196 -96 8 1328 222 342 78 17 chr11 97516511 97516627 -24327229 + RSINE1 SINE B4 43 165 0 8 1328 283 294 0 0 chr11 97516669 97516737 -24327119 + B4 SINE B4 224 291 -1 8 1328 693 213 22 0 chr11 97517389 97517525 -24326331 + B1_Mus2 SINE Alu 1 139 -8 8 1329 358 257 0 0 chr11 97517961 97518035 -24325821 - ID4_ SINE ID -8 75 2 8 1329 417 301 15 15 chr11 97518080 97518215 -24325641 - U1 snRNA snRNA -22 143 9 8 1329 219 139 0 0 chr11 97518219 97518255 -24325601 + (TTA)n Simple_repeat Simple_repeat 2 37 0 8 1329 243 326 11 11 chr11 97518539 97518632 -24325224 - MT2B2 LTR ERVL -334 250 158 8 1329 198 0 0 0 chr11 97518911 97518933 -24324923 + (C)n Simple_repeat Simple_repeat 1 22 0 9 1329 534 196 112 0 chr11 97519210 97519317 -24324539 + PB1D7 SINE Alu 2 120 0 9 1329 228 67 0 0 chr11 97519317 97519347 -24324509 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 9 1329 832 43 248 0 chr11 97519350 97519467 -24324389 + B1_Mus2 SINE Alu 2 147 0 9 1329 1243 34 0 7 chr11 97519877 97520024 -24323832 + B1_Mm SINE Alu 1 146 -1 9 1329 267 31 0 0 chr11 97521724 97521756 -24322100 + (CGGGG)n Simple_repeat Simple_repeat 2 33 0 9 1329 360 350 8 0 chr11 97522306 97522429 -24321427 + MIRb SINE MIR 29 152 -116 9 1329 613 237 44 36 chr11 97523885 97524070 -24319786 + ID_B1 SINE B4 86 272 -20 9 1329 350 184 26 44 chr11 97524408 97524522 -24319334 + (CGGG)n Simple_repeat Simple_repeat 3 114 0 9 1329 221 75 0 24 chr11 97524706 97524747 -24319109 + (GGA)n Simple_repeat Simple_repeat 2 41 0 9 1329 203 116 23 23 chr11 97524759 97524803 -24319053 + (CGG)n Simple_repeat Simple_repeat 3 46 0 1 1329 229 119 0 92 chr11 97524801 97524866 -24318990 + C-rich Low_complexity Low_complexity 3 61 0 1 1329 28 86 0 0 chr11 97525012 97525082 -24318774 + GC_rich Low_complexity Low_complexity 1 70 0 1 1329 198 118 0 0 chr11 97525920 97525954 -24317902 + (AGGGGG)n Simple_repeat Simple_repeat 6 39 0 1 1329 433 312 27 78 chr11 97527552 97527610 -24316246 - MER3 DNA MER1_type -1 208 150 1 1329 823 261 0 70 chr11 97527610 97527837 -24316019 + B3 SINE B2 2 212 -4 1 1329 433 312 27 78 chr11 97527837 97527997 -24315859 - MER3 DNA MER1_type -60 149 1 1 1329 588 121 0 0 chr11 97528749 97528840 -24315016 + (TCC)n Simple_repeat Simple_repeat 1 91 0 1 1329 1247 41 0 0 chr11 97528840 97528986 -24314870 - B1_Mus1 SINE Alu -2 146 1 1 1329 186 43 0 0 chr11 97528996 97529019 -24314837 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1329 1593 52 0 30 chr11 97529023 97529221 -24314635 - B2_Mm2 SINE B2 -3 192 1 1 1329 228 304 101 0 chr11 97529292 97529361 -24314495 - MIRc SINE MIR -119 149 74 1 1329 180 77 0 0 chr11 97530758 97530784 -24313072 + (GGA)n Simple_repeat Simple_repeat 1 26 0 1 1329 273 316 0 0 chr11 97530784 97530863 -24312993 + (CGG)n Simple_repeat Simple_repeat 1 79 0 1 1329 450 0 0 0 chr11 97531258 97531308 -24312548 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1329 336 364 73 11 chr11 97532840 97533018 -24310838 - MIR SINE MIR -73 189 1 1 1329 330 115 0 0 chr11 97533921 97533973 -24309883 + (TCC)n Simple_repeat Simple_repeat 2 53 0 1 1329 390 291 34 107 chr11 97534174 97534351 -24309505 - B3 SINE B2 -42 174 11 1 1329 253 262 100 0 chr11 97534490 97534570 -24309286 + PB1D7 SINE Alu 22 109 -11 1 1329 898 88 8 0 chr11 97536783 97536908 -24306948 + B2_Mm1t SINE B2 1 126 -67 1 1329 391 69 440 0 chr11 97536933 97537033 -24306823 + B2_Mm2 SINE B2 47 190 -5 1 1329 192 135 0 0 chr11 97540306 97540343 -24303513 + (CAG)n Simple_repeat Simple_repeat 1 37 0 1 1329 377 324 21 42 chr11 97540695 97540888 -24302968 + ID_B1 SINE B4 36 224 0 1 1329 586 220 0 45 chr11 97540760 97540893 -24302963 + B1F1 SINE Alu 23 149 0 1 1329 259 239 130 0 chr11 97540914 97541006 -24302850 + RSINE1 SINE B4 2 105 -60 1 1329 375 237 16 49 chr11 97541079 97541102 -24302754 - B3 SINE B2 0 195 147 1 1329 488 160 0 41 chr11 97541102 97541200 -24302656 - B1_Mus2 SINE Alu -1 146 53 1 1329 375 237 16 49 chr11 97541200 97541250 -24302606 - B3 SINE B2 0 146 32 1 1329 195 69 0 0 chr11 97541262 97541291 -24302565 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 1 1329 353 157 44 78 chr11 97541291 97541381 -24302475 - PB1D9 SINE Alu 0 120 34 1 1329 203 171 0 24 chr11 97542016 97542058 -24301798 + (CGG)n Simple_repeat Simple_repeat 2 42 0 1 1329 447 241 46 0 chr11 97542396 97542504 -24301352 + RSINE1 SINE B4 24 136 -29 1 1329 297 0 0 0 chr11 97542519 97542552 -24301304 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1329 249 159 0 0 chr11 97544358 97544421 -24299435 + T-rich Low_complexity Low_complexity 1 63 0 1 1329 215 139 0 27 chr11 97544545 97544582 -24299274 + (ATAGG)n Simple_repeat Simple_repeat 1 36 0 1 1329 776 98 16 8 chr11 97544985 97545109 -24298747 - B1_Mus2 SINE Alu -6 141 17 1 1329 299 190 41 29 chr11 97545196 97545294 -24298562 - B1_Mus2 SINE Alu -16 101 2 1 1329 584 130 232 36 chr11 97545294 97545406 -24298450 - B1_Mur2 SINE Alu -15 134 1 1 1329 243 0 0 0 chr11 97547348 97547375 -24296481 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1329 473 294 60 36 chr11 97548974 97549140 -24294716 + ID_B1 SINE B4 1 170 -54 1 1329 401 217 149 9 chr11 97549148 97549255 -24294601 + RSINE1 SINE B4 4 125 -40 1 1329 234 0 0 0 chr11 97549255 97549281 -24294575 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1329 282 29 0 0 chr11 97549328 97549363 -24294493 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1329 207 189 0 0 chr11 97550078 97550115 -24293741 + CT-rich Low_complexity Low_complexity 3 39 0 1 1329 294 73 0 0 chr11 97551030 97551071 -24292785 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1329 204 143 0 0 chr11 97551140 97551182 -24292674 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1329 487 217 9 0 chr11 97551958 97552064 -24291792 + B1F SINE Alu 9 115 -34 1 1329 282 56 0 0 chr11 97552075 97552111 -24291745 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1329 275 0 29 0 chr11 97554577 97554612 -24289244 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1329 259 229 0 0 chr11 97556851 97556899 -24286957 + (CACG)n Simple_repeat Simple_repeat 4 51 0 1 1329 360 0 0 0 chr11 97557959 97557999 -24285857 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1329 401 112 58 3 chr11 97558011 97558087 -24285769 - B2_Mm2 SINE B2 -115 83 6 1 1329 228 267 135 9 chr11 97558090 97558204 -24285652 - MIR3 SINE MIR -35 173 52 1 1329 1518 53 27 0 chr11 97558501 97558688 -24285168 - B2_Mm1a SINE B2 -1 192 1 1 1329 222 37 0 0 chr11 97558779 97558806 -24285050 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1329 205 211 19 37 chr11 97560618 97560672 -24283184 + GA-rich Low_complexity Low_complexity 1 53 0 1 1329 214 29 0 54 chr11 97560875 97560912 -24282944 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 1 1329 219 88 0 0 chr11 97560995 97561029 -24282827 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 1 1329 675 0 0 0 chr11 97563762 97563836 -24280020 - tRNA-Asn-AAC tRNA tRNA -3 74 1 1 1329 801 177 48 110 chr11 97565843 97566052 -24277804 - B3 SINE B2 -20 196 1 1 1329 197 65 32 0 chr11 97566057 97566088 -24277768 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1329 514 264 57 0 chr11 97566088 97566228 -24277628 - RSINE1 SINE B4 -10 155 8 1 1329 879 218 67 10 chr11 97566447 97566642 -24277214 - B3 SINE B2 -6 210 5 1 1329 219 111 0 43 chr11 97566646 97566693 -24277163 + T-rich Low_complexity Low_complexity 4 48 0 1 1329 39 0 0 0 chr11 97566742 97566781 -24277075 + AT_rich Low_complexity Low_complexity 1 39 0 1 1329 1032 72 65 0 chr11 97566796 97566934 -24276922 + B1_Mus1 SINE Alu 2 148 0 1 1329 255 290 118 0 chr11 97566957 97567050 -24276806 + MER2 DNA MER2_type 236 339 -6 1 1329 674 255 0 32 chr11 97567375 97567533 -24276323 + RSINE1 SINE B4 8 160 -5 1 1329 207 308 0 0 chr11 97567555 97567607 -24276249 + G-rich Low_complexity Low_complexity 1 52 0 1 1329 291 297 19 29 chr11 97568369 97568473 -24275383 - B1F2 SINE Alu -33 116 14 1 1329 326 302 93 7 chr11 97568688 97568828 -24275028 - B3A SINE B2 0 198 47 1 1329 554 148 179 37 chr11 97569027 97569189 -24274667 + B2_Mm2 SINE B2 3 187 -8 1 1329 816 247 113 0 chr11 97569198 97569392 -24274464 + B3 SINE B2 1 216 0 1 1329 22 0 0 0 chr11 97569428 97569450 -24274406 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 201 74 0 0 chr11 97569548 97569575 -24274281 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1 1329 755 183 52 22 chr11 97569604 97569738 -24274118 - B1_Mur4 SINE Alu -9 141 4 1 1329 22 0 0 0 chr11 97569757 97569779 -24274077 + AT_rich Low_complexity Low_complexity 1 22 0 1 1329 331 258 66 8 chr11 97569812 97569933 -24273923 + ID_B1 SINE B4 84 211 -13 1 1329 1487 132 139 14 chr11 97569963 97570077 -24273779 - RLTR9D LTR ERVK -35 402 238 1 1329 180 0 0 0 chr11 97570077 97570097 -24273759 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1329 1487 126 148 10 chr11 97570097 97570299 -24273557 - RLTR9D LTR ERVK -166 237 2 1 1329 284 306 16 122 chr11 97570599 97570677 -24273179 + RSINE1 SINE B4 56 133 -32 1 1329 207 0 0 0 chr11 97570677 97570700 -24273156 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1329 284 306 16 122 chr11 97570700 97570744 -24273112 + RSINE1 SINE B4 134 165 0 1 1329 466 134 24 24 chr11 97570828 97570912 -24272944 - B1F1 SINE Alu 0 149 66 1 1329 294 284 125 0 chr11 97570972 97571060 -24272796 - PB1D7 SINE Alu -20 100 2 1 1329 24 0 0 0 chr11 97571065 97571089 -24272767 + AT_rich Low_complexity Low_complexity 1 24 0 1 1329 507 17 0 0 chr11 97571089 97571149 -24272707 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1329 1227 45 0 0 chr11 97571151 97571308 -24272548 - B2_Mm2 SINE B2 -37 158 2 1 1329 379 253 13 0 chr11 97571330 97571409 -24272447 - ID4 SINE ID -2 81 2 1 1329 431 101 246 25 chr11 97571426 97571548 -24272308 - B2_Mm2 SINE B2 0 195 47 1 1329 1128 86 99 0 chr11 97571580 97571742 -24272114 - B2_Mm1t SINE B2 -14 179 2 1 1329 1027 66 73 0 chr11 97571788 97571925 -24271931 - B1_Mus2 SINE Alu 0 147 1 1 1329 1408 71 39 0 chr11 97571955 97572137 -24271719 - B2_Mm1t SINE B2 -4 189 1 1 1329 511 124 45 0 chr11 97572867 97572956 -24270900 - B1_Mur4 SINE Alu -22 128 36 1 1329 212 242 49 52 chr11 97573472 97573563 -24270293 - MIRb SINE MIR -92 176 87 1 1329 296 260 0 14 chr11 97573980 97574054 -24269802 + PB1D10 SINE Alu 11 83 -34 1 1329 492 18 0 0 chr11 97574269 97574326 -24269530 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1329 355 247 26 0 chr11 97574931 97575008 -24268848 - ID4_ SINE ID -3 80 2 1 1329 191 290 129 0 chr11 97575753 97575846 -24268010 - MER5A DNA MER1_type -82 107 3 1 1329 807 135 46 20 chr11 97575846 97575997 -24267859 - B2_Mm2 SINE B2 -13 182 28 1 1329 288 0 0 0 chr11 97576016 97576048 -24267808 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1329 333 176 58 14 chr11 97576064 97576133 -24267723 - ID4 SINE ID -10 73 2 1 1329 185 0 0 39 chr11 97577160 97577186 -24266670 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1329 224 30 0 29 chr11 97578073 97578107 -24265749 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1329 234 0 0 0 chr11 97580366 97580392 -24263464 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1329 213 204 0 0 chr11 97581685 97581729 -24262127 + CT-rich Low_complexity Low_complexity 2 45 0 2 1329 180 0 0 0 chr11 97582248 97582268 -24261588 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1329 1072 116 0 0 chr11 97582281 97582428 -24261428 + B1_Mus2 SINE Alu 1 147 0 2 1329 23 33 0 0 chr11 97582455 97582485 -24261371 + AT_rich Low_complexity Low_complexity 1 30 0 2 1329 966 208 5 54 chr11 97582491 97582715 -24261141 + B3A SINE B2 4 216 0 2 1329 1315 162 81 165 chr11 97582984 97583345 -24260511 + ORR1D1 LTR MaLR 2 345 -29 2 1329 1250 48 0 0 chr11 97583345 97583492 -24260364 - B1_Mus2 SINE Alu 0 147 1 2 1329 1315 162 81 165 chr11 97583492 97583537 -24260319 + ORR1D1 LTR MaLR 346 374 0 2 1329 207 0 0 0 chr11 97584415 97584438 -24259418 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1329 732 142 0 16 chr11 97584442 97584564 -24259292 - B1_Mur2 SINE Alu 0 149 30 2 1329 500 315 12 0 chr11 97584621 97584786 -24259070 - B4A SINE B4 -125 167 1 2 1329 219 69 0 0 chr11 97585949 97585978 -24257878 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2 1329 1240 61 0 0 chr11 97585990 97586138 -24257718 - B1_Mus1 SINE Alu 0 148 1 2 1329 1301 91 11 6 chr11 97586211 97586387 -24257469 + B2_Mm2 SINE B2 1 177 -18 2 1329 681 123 0 0 chr11 97586391 97586497 -24257359 + (TAGG)n Simple_repeat Simple_repeat 2 107 0 2 1329 882 209 20 25 chr11 97586703 97586904 -24256952 + B3 SINE B2 9 208 -8 2 1329 549 259 66 15 chr11 97587314 97587404 -24256452 - RSINE1 SINE B4 -20 145 48 2 1329 1462 231 101 12 chr11 97587404 97587742 -24256114 + ORR1D2 LTR MaLR 1 368 -2 2 1329 549 259 66 15 chr11 97587742 97587788 -24256068 - RSINE1 SINE B4 -118 47 2 2 1329 304 253 69 69 chr11 97587788 97587858 -24255998 + MTEb LTR MaLR 305 379 0 2 1329 360 0 0 0 chr11 97588215 97588255 -24255601 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1329 330 321 0 0 chr11 97588263 97588344 -24255512 - ID4_ SINE ID -1 82 2 2 1329 283 221 363 7 chr11 97589115 97589261 -24254595 + B3A SINE B2 1 198 0 2 1329 669 252 58 0 chr11 97589278 97589417 -24254439 + B1_Mur1 SINE Alu 2 148 -1 2 1329 264 59 0 0 chr11 97589421 97589455 -24254401 + (CAA)n Simple_repeat Simple_repeat 1 34 0 2 1329 460 160 78 29 chr11 97591123 97591226 -24252630 - PB1D9 SINE Alu 0 120 13 2 1329 1359 80 17 0 chr11 97591226 97591401 -24252455 + B2_Mm2 SINE B2 3 180 -15 2 1329 1102 70 0 13 chr11 97591401 97591560 -24252296 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 2 1329 216 0 0 0 chr11 97591685 97591709 -24252147 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1329 350 288 44 26 chr11 97591915 97592029 -24251827 + B1F SINE Alu 24 139 -10 2 1329 207 0 0 0 chr11 97592100 97592123 -24251733 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1329 332 221 155 26 chr11 97593025 97593141 -24250715 + ID_B1 SINE B4 85 215 -9 2 1329 393 283 70 9 chr11 97593290 97593404 -24250452 + B1F2 SINE Alu 17 137 -12 2 1329 222 37 0 0 chr11 97593404 97593431 -24250425 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2 1329 252 0 0 0 chr11 97594105 97594133 -24249723 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 2 1329 551 192 32 24 chr11 97594686 97594809 -24249047 + B1_Mur3 SINE Alu 5 128 -21 2 1329 312 152 0 0 chr11 97594809 97594875 -24248981 + GA-rich Low_complexity Low_complexity 1 66 0 2 1329 234 261 0 0 chr11 97595009 97595074 -24248782 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1329 330 115 0 0 chr11 97595576 97595628 -24248228 + (GGGAGA)n Simple_repeat Simple_repeat 4 55 0 2 1329 964 123 116 55 chr11 97595872 97595903 -24247953 - B2_Mm1t SINE B2 0 193 171 2 1329 1179 29 0 0 chr11 97595903 97596040 -24247816 + B1_Mus1 SINE Alu 1 137 -11 2 1329 761 65 0 18 chr11 97596040 97596149 -24247707 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 2 1329 964 123 116 55 chr11 97596149 97596297 -24247559 - B2_Mm1t SINE B2 -23 170 3 2 1329 640 172 15 45 chr11 97596304 97596438 -24247418 + B1_Mur3 SINE Alu 18 147 -2 2 1329 312 210 136 29 chr11 97596529 97596632 -24247224 + PB1D10 SINE Alu 4 117 0 2 1329 426 205 13 0 chr11 97596657 97596735 -24247121 + ID4 SINE ID 3 81 -2 2 1329 185 0 40 0 chr11 97596749 97596774 -24247082 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1329 330 273 0 0 chr11 97597031 97597108 -24246748 + PB1D10 SINE Alu 34 110 -7 2 1329 562 177 55 31 chr11 97597206 97597334 -24246522 + B1_Mur1 SINE Alu 19 149 0 2 1329 180 0 0 0 chr11 97597383 97597403 -24246453 + (TTA)n Simple_repeat Simple_repeat 1 20 0 2 1329 544 172 267 0 chr11 97597412 97597528 -24246328 - B1_Mus1 SINE Alu 0 148 2 2 1329 1243 111 15 35 chr11 97597624 97597821 -24246035 - B2_Mm2 SINE B2 -1 194 2 2 1329 301 78 62 0 chr11 97597834 97597898 -24245958 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 2 1329 1198 68 7 0 chr11 97597898 97598045 -24245811 - B1_Mus1 SINE Alu 0 148 1 2 1329 305 328 40 76 chr11 97598051 97598249 -24245607 - B3 SINE B2 0 216 26 2 1329 803 149 94 179 chr11 97598254 97598466 -24245390 - B3A SINE B2 0 198 5 2 1329 273 364 0 0 chr11 97599024 97599134 -24244722 + L2 LINE L2 2815 2924 -495 2 1329 351 258 0 79 chr11 97599582 97599683 -24244173 + PB1D10 SINE Alu 3 95 -22 2 1329 343 304 0 67 chr11 97599683 97599701 -24244155 + ID_B1 SINE B4 84 194 -30 2 1329 713 84 107 16 chr11 97599713 97599834 -24244022 + B1_Mur4 SINE Alu 19 150 0 2 1329 421 274 10 0 chr11 97599925 97600027 -24243829 + RSINE1 SINE B4 31 133 -32 2 1329 583 188 160 24 chr11 97600125 97600294 -24243562 + B2_Mm2 SINE B2 3 194 -1 2 1329 302 292 14 0 chr11 97600303 97600375 -24243481 + ID4 SINE ID 1 73 -10 2 1329 542 218 372 0 chr11 97600554 97600710 -24243146 + B3 SINE B2 2 215 -1 2 1329 603 255 6 47 chr11 97600888 97601057 -24242799 - RSINE1 SINE B4 0 165 4 2 1329 244 344 11 0 chr11 97601804 97601897 -24241959 + B1F SINE Alu 56 149 0 2 1329 618 272 62 47 chr11 97601909 97601993 -24241863 + ID SINE ID 1 87 -137 2 1329 241 333 32 71 chr11 97601993 97602119 -24241737 + B1F2 SINE Alu 1 121 -28 2 1329 1411 80 32 0 chr11 97602217 97602405 -24241451 + B2_Mm2 SINE B2 2 195 0 2 1329 297 167 0 0 chr11 97602407 97602461 -24241395 + GA-rich Low_complexity Low_complexity 1 54 0 2 1329 251 254 0 0 chr11 97602470 97602525 -24241331 + ID4_ SINE ID 28 82 -1 2 1329 809 248 84 69 chr11 97602547 97602867 -24240989 + L1M4 LINE L1 5293 5617 -561 2 1329 1223 41 14 0 chr11 97603207 97603352 -24240504 - B1_Mus1 SINE Alu -1 147 1 2 1329 183 80 0 0 chr11 97603352 97603377 -24240479 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1329 204 200 0 0 chr11 97605924 97605964 -24237892 + (CGG)n Simple_repeat Simple_repeat 2 41 0 2 1329 233 109 22 0 chr11 97606083 97606129 -24237727 + (CCCCG)n Simple_repeat Simple_repeat 4 50 0 2 1329 1143 55 0 40 chr11 97607069 97607220 -24236636 + B1_Mus2 SINE Alu 1 145 -2 2 1329 210 236 55 0 chr11 97607346 97607401 -24236455 + PB1D10 SINE Alu 21 78 -39 2 1329 220 208 115 13 chr11 97607595 97607673 -24236183 + PB1D10 SINE Alu 31 116 -1 2 1329 319 304 0 0 chr11 97607710 97607802 -24236054 + ID_B1 SINE B4 131 222 -2 2 1329 555 313 65 5 chr11 97609873 97610088 -24233768 + B4A SINE B4 10 237 -55 2 1329 856 150 13 39 chr11 97610537 97610690 -24233166 + B1_Mur3 SINE Alu 1 149 0 2 1329 261 258 30 0 chr11 97610707 97610773 -24233083 + ID_B1 SINE B4 82 149 -75 2 1329 243 0 0 0 chr11 97610793 97610820 -24233036 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1329 600 265 13 13 chr11 97610942 97611091 -24232765 - B4A SINE B4 -2 290 142 2 1329 1269 132 5 5 chr11 97611125 97611315 -24232541 - B2_Mm1a SINE B2 -2 191 2 2 1329 192 40 0 0 chr11 97611357 97611382 -24232474 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 2 1329 1196 23 0 0 chr11 97611382 97611515 -24232341 - B1_Mm SINE Alu -13 134 2 2 1329 511 265 102 0 chr11 97611555 97611702 -24232154 - RSINE1 SINE B4 0 165 4 2 1329 264 275 39 0 chr11 97611748 97611836 -24232020 + PB1D10 SINE Alu 5 102 -18 2 1329 1022 251 9 18 chr11 97611861 97612080 -24231776 + ID_B1 SINE B4 8 224 0 2 1329 674 234 14 7 chr11 97612338 97612480 -24231376 + RSINE1 SINE B4 2 144 -21 2 1329 459 0 0 0 chr11 97612490 97612541 -24231315 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1329 198 0 0 0 chr11 97612541 97612562 -24231294 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 2 1329 584 305 61 72 chr11 97612583 97612862 -24230994 + B4A SINE B4 17 292 0 2 1329 367 232 0 88 chr11 97613040 97613289 -24230567 + (TACTG)n Simple_repeat Simple_repeat 1 227 0 2 1329 202 283 0 88 chr11 97613221 97613403 -24230453 + (CATAC)n Simple_repeat Simple_repeat 4 169 0 2 1329 370 219 5 82 chr11 97613337 97613521 -24230335 + (TACTG)n Simple_repeat Simple_repeat 5 174 0 2 1329 289 268 73 45 chr11 97614196 97614299 -24229557 + B1F SINE Alu 1 100 -49 2 1329 306 73 0 0 chr11 97615289 97615330 -24228526 + (TTC)n Simple_repeat Simple_repeat 3 43 0 2 1329 21 0 0 0 chr11 97615507 97615528 -24228328 + AT_rich Low_complexity Low_complexity 1 21 0 2 1329 783 178 240 6 chr11 97615529 97615689 -24228167 + B3 SINE B2 1 202 -14 2 1329 1312 27 0 0 chr11 97615689 97615836 -24228020 + B1_Mm SINE Alu 1 147 0 3 1329 783 178 240 6 chr11 97615836 97615850 -24228006 + B3 SINE B2 203 216 0 2 1329 183 80 0 0 chr11 97616033 97616058 -24227798 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1329 847 60 0 25 chr11 97616110 97616123 -24227733 - B1_Mus2 SINE Alu 0 147 137 3 1329 228 86 0 0 chr11 97616123 97616158 -24227698 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1329 847 60 0 25 chr11 97616158 97616264 -24227592 - B1_Mus2 SINE Alu -11 136 31 3 1329 613 252 15 15 chr11 97616344 97616477 -24227379 + B3A SINE B2 1 133 -65 3 1329 222 207 102 68 chr11 97616499 97616587 -24227269 + PB1D10 SINE Alu 17 107 -10 3 1329 1301 58 109 0 chr11 97616604 97616778 -24227078 + B2_Mm2 SINE B2 2 194 -1 3 1329 1261 41 0 0 chr11 97616779 97616926 -24226930 + B1_Mus2 SINE Alu 1 147 0 3 1329 206 118 0 0 chr11 97616926 97616960 -24226896 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1329 682 147 0 9 chr11 97616968 97617078 -24226778 + B1_Mur4 SINE Alu 1 109 -41 3 1329 430 182 0 18 chr11 97617088 97617200 -24226656 + GA-rich Low_complexity Low_complexity 3 112 0 3 1329 773 204 119 22 chr11 97617226 97617411 -24226445 + B3 SINE B2 1 203 -13 3 1329 242 178 0 0 chr11 97617641 97617686 -24226170 + PB1D9 SINE Alu 76 120 0 3 1329 381 306 54 134 chr11 97617699 97617765 -24226091 + B4A SINE B4 30 93 -199 3 1329 427 286 108 31 chr11 97617765 97617895 -24225961 + B1_Mur1 SINE Alu 1 140 -9 3 1329 381 306 54 134 chr11 97617895 97618051 -24225805 + B4A SINE B4 94 234 -58 3 1329 580 240 41 8 chr11 97618073 97618195 -24225661 + RSINE1 SINE B4 28 153 -12 3 1329 783 234 36 26 chr11 97618483 97618676 -24225180 - B3A SINE B2 -3 195 1 3 1329 1238 60 78 0 chr11 97619657 97619824 -24224032 + B2_Mm2 SINE B2 2 181 -14 3 1329 1117 70 35 0 chr11 97619824 97619967 -24223889 - B1_Mus1 SINE Alu 0 148 1 3 1329 216 135 0 0 chr11 97619979 97620016 -24223840 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1329 246 271 0 0 chr11 97620561 97620609 -24223247 + ID4_ SINE ID 17 64 -19 3 1329 296 261 125 0 chr11 97620954 97621042 -24222814 + ID_B1 SINE B4 125 223 -1 3 1329 650 267 0 0 chr11 97621049 97621180 -24222676 + RSINE1 SINE B4 4 134 -31 3 1329 414 203 13 13 chr11 97621183 97621258 -24222598 + BC1_Mm scRNA scRNA 2 76 -76 3 1329 364 200 29 0 chr11 97621443 97621513 -24222343 + ID4 SINE ID 9 80 -3 3 1329 925 169 10 62 chr11 97621605 97621800 -24222056 + B2_Mm2 SINE B2 2 186 -9 3 1329 1533 42 5 16 chr11 97621806 97621999 -24221857 + B2_Mm2 SINE B2 1 191 -4 3 1329 317 250 208 0 chr11 97622486 97622558 -24221298 + PB1D7 SINE Alu 21 107 -13 3 1329 866 126 112 107 chr11 97622580 97622688 -24221168 + B2_Mm1t SINE B2 1 118 -75 3 1329 1188 41 0 40 chr11 97622688 97622840 -24221016 - B1_Mm SINE Alu 0 147 2 3 1329 866 126 112 107 chr11 97622840 97622909 -24220947 + B2_Mm1t SINE B2 119 179 -14 3 1329 371 188 246 50 chr11 97622909 97623067 -24220789 + B2_Mm2 SINE B2 2 188 -7 3 1329 496 253 88 103 chr11 97623069 97623263 -24220593 - B3 SINE B2 -25 191 1 3 1329 1085 226 144 6 chr11 97623336 97623656 -24220200 - MTE2a LTR MaLR -1 378 15 3 1329 731 260 82 120 chr11 97624789 97625113 -24218743 - MTE2a LTR MaLR -59 360 46 3 1329 1222 55 7 0 chr11 97625114 97625260 -24218596 + B1_Mus2 SINE Alu 1 147 0 3 1329 229 282 105 66 chr11 97626368 97626520 -24217336 + MER20 DNA MER1_type 25 182 -37 3 1329 1342 216 100 16 chr11 97626560 97626880 -24216976 + MTD LTR MaLR 57 403 -16 3 1329 21 0 0 0 chr11 97628373 97628394 -24215462 + AT_rich Low_complexity Low_complexity 1 21 0 3 1329 551 248 41 34 chr11 97628394 97628540 -24215316 - B1_Mus2 SINE Alu 0 147 1 3 1329 22 35 0 0 chr11 97628546 97628575 -24215281 + AT_rich Low_complexity Low_complexity 1 29 0 3 1329 1134 88 0 7 chr11 97628577 97628725 -24215131 + B1_Mus1 SINE Alu 2 148 0 3 1329 275 72 0 23 chr11 97628726 97628769 -24215087 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 3 1329 503 149 0 33 chr11 97628781 97628871 -24214985 - B2_Mm1t SINE B2 -26 167 81 3 1329 1137 29 0 7 chr11 97628883 97629023 -24214833 - B1_Mus2 SINE Alu 0 147 9 3 1329 523 276 79 79 chr11 97629023 97629107 -24214749 - B4 SINE B4 -63 225 2 3 1329 249 158 0 0 chr11 97629140 97629178 -24214678 + B3 SINE B2 2 39 -177 3 1329 1165 82 7 0 chr11 97629181 97629327 -24214529 + B1_Mus2 SINE Alu 1 147 0 3 1329 673 246 83 6 chr11 97629808 97629976 -24213880 + B3 SINE B2 27 207 -9 3 1329 305 211 18 0 chr11 97630034 97630091 -24213765 + PB1D9 SINE Alu 18 75 -45 3 1329 377 289 11 0 chr11 97630142 97630232 -24213624 + B3A SINE B2 87 177 -21 3 1329 2103 89 41 6 chr11 97630283 97630598 -24213258 + Lx2A1 LINE L1 6570 6895 -113 3 1329 819 35 261 0 chr11 97630652 97630767 -24213089 + B1_Mus2 SINE Alu 3 147 0 3 1329 388 244 0 24 chr11 97630788 97630872 -24212984 + B1_Mur2 SINE Alu 68 149 0 3 1329 230 278 20 0 chr11 97630921 97631004 -24212852 - ID4 SINE ID -66 86 2 3 1329 672 27 0 0 chr11 97631139 97631214 -24212642 - tRNA-Cys-TGY tRNA tRNA 0 75 1 3 1329 290 275 10 52 chr11 97631657 97631753 -24212103 - PB1D10 SINE Alu -5 112 21 3 1329 1129 51 14 21 chr11 97631797 97631938 -24211918 + B1_Mm SINE Alu 1 140 -7 3 1329 180 111 0 0 chr11 97631938 97631965 -24211891 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1329 1492 48 38 0 chr11 97631973 97632159 -24211697 - B2_Mm2 SINE B2 -1 194 2 3 1329 421 290 23 15 chr11 97632218 97632351 -24211505 - B1F2 SINE Alu -11 138 5 3 1329 208 167 0 23 chr11 97632379 97632422 -24211434 + T-rich Low_complexity Low_complexity 3 44 0 3 1329 423 278 64 9 chr11 97632446 97632555 -24211301 - RSINE1 SINE B4 -1 164 50 3 1329 1067 106 147 0 chr11 97633177 97633347 -24210509 + B2_Mm2 SINE B2 1 195 0 3 1329 261 0 0 0 chr11 97633687 97633716 -24210140 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1329 372 300 8 24 chr11 97634349 97634472 -24209384 + MIR SINE MIR 24 144 -118 3 1329 359 271 75 37 chr11 97634602 97634736 -24209120 - ID_B1 SINE B4 -4 220 82 3 1329 758 193 28 0 chr11 97634815 97634960 -24208896 + B1_Mur4 SINE Alu 2 150 0 3 1329 1006 33 0 0 chr11 97634964 97635085 -24208771 + B1_Mm SINE Alu 27 147 0 3 1329 381 93 0 0 chr11 97635085 97635139 -24208717 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1329 943 50 0 32 chr11 97635141 97635266 -24208590 + B1_Mus1 SINE Alu 28 148 0 3 1329 282 29 0 0 chr11 97635266 97635301 -24208555 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 3 1329 430 125 25 0 chr11 97635300 97635380 -24208476 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 1329 316 333 0 0 chr11 97635412 97635496 -24208360 + B1F SINE Alu 11 94 -55 3 1329 2756 97 44 15 chr11 97635742 97636151 -24207705 + BGLII LTR ERVK 1 421 0 3 1329 186 43 0 0 chr11 97636198 97636221 -24207635 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1329 248 274 0 0 chr11 97636248 97636299 -24207557 - ID4_ SINE ID -30 53 3 3 1329 237 282 129 0 chr11 97636299 97636377 -24207479 + PB1 SINE Alu 37 125 -2 3 1329 300 181 80 40 chr11 97636725 97636800 -24207056 + MTEb LTR MaLR 143 220 -159 3 1329 283 186 52 121 chr11 97637283 97637399 -24206457 - ID_B1 SINE B4 -114 110 3 3 1329 769 103 167 0 chr11 97637767 97637893 -24205963 - B1_Mus1 SINE Alu 0 148 2 3 1329 181 236 67 83 chr11 97637946 97638006 -24205850 + L2 LINE L2 2383 2441 -978 3 1329 261 228 100 12 chr11 97638057 97638130 -24205726 + PB1D9 SINE Alu 18 87 -61 3 1329 956 119 95 11 chr11 97638471 97638650 -24205206 - B2_Mm2 SINE B2 0 195 2 3 1329 1099 50 42 7 chr11 97638979 97639121 -24204735 - B1_Mus2 SINE Alu 0 147 1 3 1329 911 93 170 24 chr11 97639805 97639970 -24203886 + B2_Mm1a SINE B2 2 190 -3 3 1329 836 98 47 47 chr11 97640030 97640159 -24203697 + B1_Mus1 SINE Alu 2 130 -18 3 1329 1348 90 0 64 chr11 97640770 97640946 -24202910 + B2_Mm2 SINE B2 1 165 -30 3 1329 1108 84 0 0 chr11 97640946 97641088 -24202768 - B1_Mus1 SINE Alu -6 142 1 3 1329 1348 90 0 64 chr11 97641088 97641113 -24202743 + B2_Mm2 SINE B2 166 189 -6 3 1329 360 0 0 0 chr11 97641113 97641153 -24202703 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1329 226 284 42 83 chr11 97641155 97641167 -24202689 - MT2B2 LTR ERVL -325 259 168 3 1329 251 337 12 12 chr11 97641167 97641251 -24202605 - PB1D10 SINE Alu -30 87 4 3 1329 946 71 0 23 chr11 97641279 97641409 -24202447 + B1_Mus1 SINE Alu 22 148 0 3 1329 1037 37 82 0 chr11 97642453 97642587 -24201269 + B1_Mus2 SINE Alu 2 146 -1 3 1329 209 77 0 49 chr11 97642588 97642629 -24201227 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1329 320 288 90 0 chr11 97644021 97644132 -24199724 + PB1 SINE Alu 4 124 -3 3 1329 351 0 0 0 chr11 97644490 97644529 -24199327 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 1329 1097 59 0 29 chr11 97644532 97644671 -24199185 - B1_Mus2 SINE Alu -12 135 1 3 1329 23 0 0 0 chr11 97644678 97644701 -24199155 + AT_rich Low_complexity Low_complexity 1 23 0 3 1329 236 316 95 54 chr11 97644751 97644898 -24198958 - L2a LINE L2 -3 3423 3271 3 1329 1511 49 22 5 chr11 97644905 97645090 -24198766 + B2_Mm2 SINE B2 2 189 -6 3 1329 225 203 38 35 chr11 97645255 97645313 -24198543 + PB1 SINE Alu 59 127 0 3 1329 760 211 0 40 chr11 97645382 97645482 -24198374 - B1_Mus2 SINE Alu -1 146 52 3 1329 3376 68 99 70 chr11 97645482 97645985 -24197871 - MURVY-LTR LTR ERV1 -1 518 1 4 1329 760 211 0 40 chr11 97645985 97646032 -24197824 - B1_Mus2 SINE Alu -96 51 5 3 1329 288 0 0 0 chr11 97646073 97646105 -24197751 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1329 3704 32 93 122 chr11 97646185 97646790 -24197066 - RLTR6_Mm LTR ERV1 -67 587 1 4 1329 278 306 56 0 chr11 97646790 97646862 -24196994 + RSINE1 SINE B4 86 161 -4 4 1329 953 196 42 56 chr11 97647022 97647048 -24196808 + B3 SINE B2 4 27 -189 4 1329 1204 141 56 14 chr11 97647048 97647264 -24196592 + URR1A DNA MER1_type 2 226 0 4 1329 953 196 42 56 chr11 97647264 97647453 -24196403 + B3 SINE B2 28 216 0 4 1329 254 266 0 31 chr11 97647678 97647703 -24196153 + A-rich Low_complexity Low_complexity 1 25 0 4 1329 1014 67 82 0 chr11 97647703 97647838 -24196018 + B1_Mus2 SINE Alu 2 147 0 4 1329 254 266 0 31 chr11 97647838 97647884 -24195972 + A-rich Low_complexity Low_complexity 26 67 0 4 1329 757 157 44 15 chr11 97647884 97648020 -24195836 + B1_Mur4 SINE Alu 4 143 -7 4 1329 254 266 0 31 chr11 97648020 97648075 -24195781 + A-rich Low_complexity Low_complexity 68 122 0 4 1329 460 103 46 0 chr11 97648445 97648532 -24195324 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 4 166 1242 55 0 0 chr11 97648550 97648696 -24195160 - B1_Mus2 SINE Alu 0 147 2 4 1330 852 212 78 29 chr11 97648735 97648939 -24194917 + B3 SINE B2 1 214 -2 4 1330 22 0 0 0 chr11 97648941 97648963 -24194893 + AT_rich Low_complexity Low_complexity 1 22 0 4 1330 1433 121 8 55 chr11 97648978 97649215 -24194641 - MTC LTR MaLR 0 421 196 4 1330 285 146 0 0 chr11 97649217 97649265 -24194591 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1330 956 50 0 0 chr11 97649265 97649386 -24194470 - B1_Mus2 SINE Alu 0 147 27 4 1330 994 172 5 26 chr11 97649390 97649581 -24194275 - MTC LTR MaLR -207 200 14 4 1330 265 62 359 0 chr11 97649562 97649626 -24194230 - MTC-int LTR MaLR -10 1248 1162 4 1330 407 248 69 113 chr11 97649596 97649641 -24194215 + B4 SINE B4 59 206 -82 4 1330 676 131 36 27 chr11 97649641 97649751 -24194105 + B1_Mur4 SINE Alu 10 120 -30 4 1330 258 32 0 0 chr11 97649755 97649786 -24194070 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1330 1040 66 14 7 chr11 97649786 97649924 -24193932 - B1_Mus1 SINE Alu 0 148 10 4 1330 401 214 0 10 chr11 97649943 97650042 -24193814 + GA-rich Low_complexity Low_complexity 3 100 0 4 1330 299 103 0 0 chr11 97650051 97650090 -24193766 + B1_Mus2 SINE Alu 1 39 -108 4 1330 3080 154 49 22 chr11 97650063 97650243 -24193613 - MTC-int LTR MaLR -690 568 394 4 1330 790 76 193 0 chr11 97650243 97650362 -24193494 - B1_Mm SINE Alu -5 142 1 4 1330 3080 142 49 22 chr11 97650362 97650748 -24193108 - MTC-int LTR MaLR -865 393 1 4 1330 725 154 81 0 chr11 97650797 97650920 -24192936 + B1_Mur3 SINE Alu 12 144 -5 4 1330 22 35 0 0 chr11 97650920 97650949 -24192907 + AT_rich Low_complexity Low_complexity 1 29 0 4 1330 195 100 0 0 chr11 97650952 97650982 -24192874 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 4 1330 652 189 0 62 chr11 97650997 97651127 -24192729 + B1_Mur4 SINE Alu 29 150 0 4 1330 201 94 0 0 chr11 97651130 97651162 -24192694 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1330 1026 80 0 68 chr11 97651232 97651380 -24192476 + B1_Mus1 SINE Alu 2 139 -9 4 1330 207 0 0 0 chr11 97651380 97651403 -24192453 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1330 1725 165 11 51 chr11 97651435 97651787 -24192069 - RLTR11B LTR ERVK 0 453 116 4 1330 530 175 129 17 chr11 97651774 97651890 -24191966 + B1_Mur1 SINE Alu 19 147 -2 4 1330 1743 109 88 103 chr11 97651900 97652277 -24191579 + RMER4B LTR ERVK 3 373 -212 4 1330 913 116 70 99 chr11 97652278 97652315 -24191541 + B2_Mm2 SINE B2 3 35 -160 4 1330 1643 42 0 0 chr11 97652315 97652508 -24191348 + B2_Mm1a SINE B2 1 193 0 4 1330 913 116 70 99 chr11 97652508 97652642 -24191214 + B2_Mm2 SINE B2 36 169 -26 4 1330 209 33 33 0 chr11 97652644 97652674 -24191182 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1330 1112 171 12 122 chr11 97652677 97652784 -24191072 + RMER4B LTR ERVK 364 453 -132 4 1330 1176 62 7 0 chr11 97652784 97652930 -24190926 - B1_Mus2 SINE Alu 0 147 1 4 1330 1112 171 12 122 chr11 97652930 97653068 -24190788 + RMER4B LTR ERVK 454 582 -3 4 1330 667 260 100 20 chr11 97653109 97653309 -24190547 - B3 SINE B2 0 216 1 4 1330 943 117 27 14 chr11 97653456 97653603 -24190253 - B1_Mur4 SINE Alu -1 149 1 4 1330 438 69 0 0 chr11 97653604 97653662 -24190194 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 4 1330 345 140 0 0 chr11 97654117 97654174 -24189682 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 4 1330 361 277 17 86 chr11 97654222 97654384 -24189472 - RMER5 LTR ERV1 -9 525 375 4 1330 1069 57 49 14 chr11 97654384 97654526 -24189330 + B1_Mus2 SINE Alu 1 147 0 4 1330 361 277 17 86 chr11 97654526 97654537 -24189319 - RMER5 LTR ERV1 -160 374 364 4 1330 758 121 112 122 chr11 97654570 97654758 -24189098 - B2_Mm2 SINE B2 -7 188 3 4 1330 276 200 187 0 chr11 97654760 97654835 -24189021 - RMER5 LTR ERV1 -267 267 179 4 1330 362 222 68 27 chr11 97654850 97654924 -24188932 - B1_Mur2 SINE Alu -56 93 17 4 1330 415 200 140 35 chr11 97654934 97655048 -24188808 - ID_B1 SINE B4 0 224 99 4 1330 2384 215 58 24 chr11 97655094 97655752 -24188104 - Lx9 LINE L1 -8 7636 6957 4 1330 558 0 0 0 chr11 97655944 97656006 -24187850 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1330 524 297 47 0 chr11 97656014 97656142 -24187714 - RSINE1 SINE B4 -29 136 3 4 1330 269 321 34 41 chr11 97656408 97656545 -24187311 + L2 LINE L2 1384 1519 -1900 4 1330 300 120 0 0 chr11 97656545 97656595 -24187261 + (CTGTG)n Simple_repeat Simple_repeat 3 52 0 4 1330 1099 64 43 0 chr11 97656664 97656805 -24187051 + B1_Mus2 SINE Alu 1 147 0 4 1330 249 33 0 0 chr11 97656805 97656835 -24187021 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1330 224 59 29 0 chr11 97656923 97656957 -24186899 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 4 1330 1158 77 0 0 chr11 97656973 97657116 -24186740 - B1_Mus2 SINE Alu -4 143 1 4 1330 225 94 0 0 chr11 97657424 97657456 -24186400 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 4 1330 420 177 63 0 chr11 97657494 97657573 -24186283 + B1_Mus1 SINE Alu 1 84 -64 4 1330 352 274 10 21 chr11 97657656 97657753 -24186103 - PB1D10 SINE Alu -13 104 9 4 1330 876 196 0 0 chr11 97657761 97657940 -24185916 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1330 632 28 0 0 chr11 97658385 97658457 -24185399 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 4 1330 330 167 38 89 chr11 97658721 97658800 -24185056 + B1F2 SINE Alu 1 75 -74 4 1330 1032 79 50 0 chr11 97658800 97658940 -24184916 + B1_Mus2 SINE Alu 1 147 0 4 1330 354 239 0 15 chr11 97658954 97659022 -24184834 + ID_B1 SINE B4 143 209 -15 4 1330 207 0 0 0 chr11 97659023 97659046 -24184810 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 4 1330 288 294 137 69 chr11 97659504 97659679 -24184177 + MER5A DNA MER1_type 3 189 0 4 1330 630 41 0 0 chr11 97660218 97660291 -24183565 - tRNA-Cys-TGY tRNA tRNA -2 73 1 4 1330 222 177 16 31 chr11 97661557 97661621 -24182235 + G-rich Low_complexity Low_complexity 5 67 0 4 1330 189 252 234 37 chr11 97662820 97662927 -24180929 + MIR3 SINE MIR 34 161 -47 4 1330 220 254 0 35 chr11 97663670 97663727 -24180129 - L2b LINE L2 -2 3373 3319 4 1330 868 215 9 89 chr11 97663925 97664150 -24179706 - B3 SINE B2 -5 211 5 4 1330 205 152 0 0 chr11 97664152 97664185 -24179671 + C-rich Low_complexity Low_complexity 1 33 0 4 1330 510 236 33 73 chr11 97664334 97664485 -24179371 + RMER30 DNA MER1_type 5 149 -53 4 1330 304 231 0 5 chr11 97664594 97664652 -24179204 - B1F1 SINE Alu -87 62 8 4 1330 439 272 25 42 chr11 97664676 97664795 -24179061 - PB1D10 SINE Alu 0 117 1 4 1330 539 296 11 77 chr11 97664795 97664883 -24178973 - ID SINE ID -148 76 1 4 1330 44 0 0 0 chr11 97664923 97664967 -24178889 + AT_rich Low_complexity Low_complexity 1 44 0 4 1330 686 172 15 62 chr11 97664996 97665126 -24178730 + B1F2 SINE Alu 7 130 -19 4 1330 255 31 0 0 chr11 97665588 97665620 -24178236 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 4 1330 214 220 195 18 chr11 97668354 97668446 -24175410 - MIR SINE MIR -87 189 77 4 1330 188 143 0 23 chr11 97668655 97668698 -24175158 + CT-rich Low_complexity Low_complexity 2 43 0 4 1330 1046 234 0 10 chr11 97668714 97668917 -24174939 - B3 SINE B2 -6 210 10 4 1330 273 230 54 0 chr11 97671447 97671521 -24172335 - ID_B1 SINE B4 -2 222 145 4 1330 282 29 0 0 chr11 97671528 97671563 -24172293 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 4 1330 513 224 79 36 chr11 97671713 97671852 -24172004 - ID_B1 SINE B4 -70 154 10 4 1330 196 341 0 68 chr11 97672128 97672216 -24171640 - MIR3 SINE MIR -12 196 115 4 1330 193 250 0 111 chr11 97673202 97673265 -24170591 + MIR SINE MIR 116 171 -97 4 1330 21 0 0 0 chr11 97673477 97673498 -24170358 + GC_rich Low_complexity Low_complexity 1 21 0 4 1330 187 324 106 19 chr11 97676178 97676282 -24167574 + MIRb SINE MIR 111 223 -45 4 1330 653 169 48 0 chr11 97676422 97676546 -24167310 - B1_Mur4 SINE Alu -19 131 2 4 1330 223 252 95 78 chr11 97677915 97678031 -24165825 + B3 SINE B2 87 204 -12 4 1330 359 121 0 29 chr11 97678570 97678638 -24165218 + CT-rich Low_complexity Low_complexity 3 68 0 4 1330 258 281 0 0 chr11 97678638 97678695 -24165161 + polypyrimidine Low_complexity Low_complexity 4 60 0 4 1330 419 258 133 0 chr11 97679109 97679237 -24164619 - B1F1 SINE Alu -2 147 3 4 1330 357 245 0 4 chr11 97679503 97679590 -24164266 - PB1D7 SINE Alu -60 89 5 4 1330 224 259 0 158 chr11 97679590 97679604 -24164252 - ID_B1 SINE B4 -57 167 83 4 1330 459 0 0 0 chr11 97680502 97680553 -24163303 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1330 239 244 81 103 chr11 97680813 97680900 -24162956 + B4A SINE B4 169 253 -39 4 1330 965 121 0 0 chr11 97681102 97681243 -24162613 - B1_Mus1 SINE Alu -1 147 7 4 1330 195 311 74 46 chr11 97681271 97681379 -24162477 + MIR SINE MIR 33 143 -119 5 1330 1196 62 7 0 chr11 97681678 97681824 -24162032 - B1_Mus1 SINE Alu -1 147 1 5 1330 474 178 154 8 chr11 97681827 97681957 -24161899 - B1_Mur1 SINE Alu 0 149 1 5 1330 230 218 33 98 chr11 97681970 97682031 -24161825 - PB1D7 SINE Alu -8 112 56 5 1330 406 215 44 11 chr11 97682988 97683117 -24160739 - MIRm SINE MIR -106 156 29 5 1330 219 220 0 0 chr11 97683149 97683199 -24160657 + GA-rich Low_complexity Low_complexity 1 50 0 5 1330 327 104 0 0 chr11 97683284 97683332 -24160524 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1330 312 242 157 8 chr11 97683352 97683473 -24160383 - B1_Mur1 SINE Alu -8 141 3 5 1330 241 132 19 19 chr11 97683491 97683545 -24160311 + T-rich Low_complexity Low_complexity 2 55 0 5 1330 1130 101 0 26 chr11 97683549 97683701 -24160155 - B1_Mus1 SINE Alu 0 148 1 5 1330 403 268 0 35 chr11 97683712 97683828 -24160028 - PB1D9 SINE Alu -7 113 2 5 1330 351 0 0 0 chr11 97685009 97685048 -24158808 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 5 1330 1218 56 0 0 chr11 97685050 97685192 -24158664 - B1_Mus1 SINE Alu -6 142 1 5 1330 1310 75 0 17 chr11 97685203 97685380 -24158476 - B2_Mm2 SINE B2 -20 175 2 5 1330 413 296 10 0 chr11 97685411 97685509 -24158347 - B3 SINE B2 -65 151 53 5 1330 348 176 0 0 chr11 97685872 97685923 -24157933 - B3 SINE B2 -159 57 7 5 1330 448 265 24 57 chr11 97687349 97687473 -24156383 + B1F1 SINE Alu 10 129 -20 5 1330 290 373 42 7 chr11 97688802 97688945 -24154911 + MARNA DNA Mariner 227 374 -212 5 1330 218 220 17 0 chr11 97689635 97689694 -24154162 + GA-rich Low_complexity Low_complexity 2 61 0 5 1330 327 293 24 0 chr11 97690040 97690122 -24153734 + PB1D7 SINE Alu 21 104 -16 5 1330 237 180 0 0 chr11 97690130 97690180 -24153676 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 5 1330 429 141 0 0 chr11 97690182 97690253 -24153603 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 5 1330 622 259 19 68 chr11 97690347 97690554 -24153302 - B3A SINE B2 0 198 2 5 1330 511 322 10 66 chr11 97690628 97690824 -24153032 - B3 SINE B2 -22 194 10 5 1330 793 94 7 59 chr11 97690935 97691071 -24152785 + B1_Mur4 SINE Alu 22 150 0 5 1330 240 280 43 5 chr11 97691179 97691270 -24152586 + MIRc SINE MIR 112 212 -56 5 1330 431 278 8 0 chr11 97691653 97691764 -24152092 + B3 SINE B2 1 115 -78 5 1330 438 237 120 26 chr11 97692194 97692311 -24151545 - RSINE1 SINE B4 -36 129 2 5 1330 614 259 28 14 chr11 97692528 97692673 -24151183 - B1F2 SINE Alu -1 148 2 5 1330 1614 32 5 0 chr11 97692808 97692994 -24150862 - B2_Mm1t SINE B2 -5 188 2 5 1330 542 214 49 1 chr11 97694338 97694467 -24149389 - B1_Mur1 SINE Alu -8 141 1 5 1330 281 310 129 84 chr11 97694467 97694484 -24149372 - B4 SINE B4 -65 178 66 5 1330 258 229 28 28 chr11 97694560 97694632 -24149224 + PB1D9 SINE Alu 49 120 0 5 1330 249 225 267 11 chr11 97694697 97694787 -24149069 - PB1 SINE Alu -14 113 1 5 1330 198 150 0 0 chr11 97695565 97695605 -24148251 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1330 339 254 0 66 chr11 97695612 97695688 -24148168 + ID4 SINE ID 4 74 -9 5 1330 228 180 20 0 chr11 97696268 97696318 -24147538 + (CACTA)n Simple_repeat Simple_repeat 4 54 0 5 1330 373 267 22 22 chr11 97696353 97696457 -24147399 + PB1D7 SINE Alu 9 119 -8 5 1330 226 176 0 0 chr11 97696757 97696791 -24147065 - ID2 SINE ID 0 83 50 5 1330 283 281 18 119 chr11 97696801 97696910 -24146946 - B1F1 SINE Alu -17 100 3 5 1330 855 203 202 6 chr11 97696923 97697101 -24146755 - B3 SINE B2 -3 213 1 5 1330 782 154 38 15 chr11 97697893 97698025 -24145831 + B1_Mur2 SINE Alu 3 137 -12 5 1330 237 167 0 0 chr11 97699846 97699900 -24143956 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1330 996 82 82 0 chr11 97701055 97701190 -24142666 + B1_Mm SINE Alu 2 147 0 5 1330 342 67 0 0 chr11 97701190 97701235 -24142621 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1330 645 279 19 13 chr11 97701423 97701579 -24142277 - RSINE1 SINE B4 -2 163 7 5 1330 259 207 82 103 chr11 97701626 97701723 -24142133 + PB1D10 SINE Alu 23 117 0 5 1330 185 35 69 0 chr11 97703052 97703081 -24140775 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1330 264 30 0 0 chr11 97704211 97704244 -24139612 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 5 1330 479 240 40 0 chr11 97704427 97704527 -24139329 + PB1D10 SINE Alu 1 104 -13 5 1330 901 240 79 10 chr11 97704535 97704737 -24139119 + B3 SINE B2 1 216 0 5 1330 319 208 52 0 chr11 97704893 97704970 -24138886 - ID4_ SINE ID -2 81 1 5 1330 786 170 64 0 chr11 97704993 97705134 -24138722 + B1_Mur4 SINE Alu 1 150 0 5 1330 773 133 138 15 chr11 97705296 97705426 -24138430 + B1_Mus2 SINE Alu 1 146 -1 5 1330 579 210 5 14 chr11 97705494 97705612 -24138244 - PB1D10 SINE Alu -21 128 11 5 1330 536 0 0 15 chr11 97705881 97705946 -24137910 + (TTA)n Simple_repeat Simple_repeat 3 66 0 5 1330 320 282 184 13 chr11 97705948 97706106 -24137750 - HAL1-3A_ME LINE L1 -390 2468 2284 5 1330 270 266 61 13 chr11 97706116 97706222 -24137634 - B1F SINE Alu -10 107 1 5 1330 1628 42 0 0 chr11 97706516 97706705 -24137151 - B2_Mm1t SINE B2 -4 189 1 5 1330 884 224 24 28 chr11 97706881 97707092 -24136764 - B3 SINE B2 -5 211 2 5 1330 240 111 0 0 chr11 97707151 97707187 -24136669 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1330 434 224 79 30 chr11 97707192 97707293 -24136563 - RSINE1 SINE B4 -33 132 27 5 1330 315 0 0 0 chr11 97707309 97707344 -24136512 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1330 898 50 117 0 chr11 97707345 97707465 -24136391 - B1_Mus2 SINE Alu -12 135 2 5 1330 180 77 0 0 chr11 97707558 97707584 -24136272 + (TTGTG)n Simple_repeat Simple_repeat 2 27 0 5 1330 268 307 68 0 chr11 97707584 97707672 -24136184 - PB1D7 SINE Alu 0 120 27 5 1330 794 238 30 108 chr11 97707706 97707899 -24135957 - B3 SINE B2 0 216 31 5 1330 1304 90 5 31 chr11 97707899 97708071 -24135785 + B2_Mm2 SINE B2 1 169 -26 5 1330 1632 16 22 0 chr11 97708071 97708253 -24135603 + B2_Mm1a SINE B2 1 186 -7 5 1330 1304 90 5 31 chr11 97708253 97708275 -24135581 + B2_Mm2 SINE B2 170 190 -5 5 1330 412 27 0 63 chr11 97708279 97708358 -24135498 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1330 794 238 30 108 chr11 97708358 97708390 -24135466 - B3 SINE B2 -186 30 4 5 1330 1798 119 178 12 chr11 97708537 97708868 -24134988 + ORR1B1 LTR MaLR 1 386 -8 5 1330 505 232 0 40 chr11 97708872 97708971 -24134885 - B1F SINE Alu -54 95 1 5 1330 1190 88 0 0 chr11 97709402 97709549 -24134307 + B1_Mus1 SINE Alu 2 148 0 5 1330 235 226 0 0 chr11 97709549 97709611 -24134245 + A-rich Low_complexity Low_complexity 1 62 0 5 1330 646 160 193 0 chr11 97709798 97709917 -24133939 - B1_Mus2 SINE Alu 0 147 6 5 1330 279 254 32 0 chr11 97710321 97710384 -24133472 + tRNA-Ala-GCY_ tRNA tRNA 5 69 -6 5 1330 277 298 28 0 chr11 97710384 97710399 -24133457 + ID4_ SINE ID 33 90 -62 5 1330 612 246 13 74 chr11 97710491 97710640 -24133216 - B1F2 SINE Alu 0 149 10 5 1330 685 184 88 0 chr11 97710686 97710811 -24133045 + B1_Mur1 SINE Alu 1 136 -13 5 1330 1125 68 7 0 chr11 97710832 97710978 -24132878 - B1_Mus2 SINE Alu 0 147 1 5 1330 2602 65 3 6 chr11 97711024 97711363 -24132493 - ORR1A1 LTR MaLR -8 338 1 5 1330 1177 68 0 0 chr11 97711445 97711592 -24132264 + B1_Mus2 SINE Alu 1 147 0 5 1330 1104 87 0 0 chr11 97712488 97712626 -24131230 - B1_Mus1 SINE Alu -6 142 5 5 1330 216 67 0 0 chr11 97712658 97712688 -24131168 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1330 1187 94 62 57 chr11 97712750 97712942 -24130914 - B2_Mm2 SINE B2 -1 194 2 5 1330 997 129 0 13 chr11 97713124 97713273 -24130583 + B1_Mus1 SINE Alu 1 147 -1 5 1330 368 230 0 26 chr11 97713443 97713519 -24130337 + ID4_ SINE ID 9 82 -1 5 1330 853 194 41 56 chr11 97713637 97713834 -24130022 - B3 SINE B2 0 216 23 5 1330 375 238 0 101 chr11 97713867 97713956 -24129900 + MT2B LTR ERVL 161 240 -361 5 1330 816 194 14 0 chr11 97713879 97714018 -24129838 + B1_Mur4 SINE Alu 10 150 0 5 1330 312 176 176 0 chr11 97714628 97714702 -24129154 + ID4 SINE ID 2 88 -64 5 1330 304 265 162 0 chr11 97715092 97715209 -24128647 - L1MCa LINE L1 -4560 1948 1813 5 1330 204 311 99 11 chr11 97715989 97716080 -24127776 + MIRm SINE MIR 49 147 -129 5 1330 567 174 181 38 chr11 97716082 97716231 -24127625 + B3 SINE B2 2 173 -43 5 1330 375 23 0 0 chr11 97716231 97716275 -24127581 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1330 451 192 81 62 chr11 97716275 97716305 -24127551 + B2_Mm2 SINE B2 160 186 -9 5 1330 317 254 0 0 chr11 97716306 97716369 -24127487 + B1_Mur4 SINE Alu 11 73 -77 5 1330 700 226 0 49 chr11 97716463 97716607 -24127249 + B1_Mur2 SINE Alu 9 145 -4 5 1330 558 267 186 16 chr11 97717011 97717194 -24126662 + ID_B1 SINE B4 3 216 -8 5 1330 528 16 0 0 chr11 97717286 97717347 -24126509 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1330 513 32 0 0 chr11 97717347 97717409 -24126447 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1330 830 131 100 0 chr11 97717761 97717891 -24125965 - B1_Mur3 SINE Alu -5 144 2 6 1330 324 0 0 0 chr11 97718561 97718597 -24125259 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1330 207 0 0 0 chr11 97718599 97718622 -24125234 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1330 671 190 37 7 chr11 97718693 97718866 -24124990 - B3 SINE B2 -10 185 1 6 1330 995 249 52 101 chr11 97719272 97719795 -24124061 + MYSERV16_I-int LTR ERVK 244 740 -1586 6 1330 771 180 11 11 chr11 97719797 97719977 -24123879 + CT-rich Low_complexity Low_complexity 1 180 0 6 1330 1151 89 0 0 chr11 97719977 97720123 -24123733 - B1_Mus1 SINE Alu -1 147 2 6 1330 522 0 0 0 chr11 97720140 97720198 -24123658 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 6 1330 530 245 50 7 chr11 97720200 97720340 -24123516 + MYSERV-int LTR ERVK 4981 5126 -1424 6 1330 575 298 43 22 chr11 97720340 97720525 -24123331 + RMER4A LTR ERVK 251 439 -27 6 1330 691 176 25 12 chr11 97720525 97720686 -24123170 + MYSERV-int LTR ERVK 5305 5467 -1083 6 1330 588 80 100 2 chr11 97720686 97720788 -24123068 - B1_Mus1 SINE Alu -5 115 4 6 1330 372 174 161 11 chr11 97720710 97720797 -24123059 - B4 SINE B4 -113 179 80 6 1330 1932 144 20 51 chr11 97720806 97721177 -24122679 + MYSERV6-int LTR ERVK 7937 8300 -659 6 1330 2222 125 55 0 chr11 97721177 97721505 -24122351 + ORR1A1 LTR MaLR 1 346 0 6 1330 1932 144 20 51 chr11 97721505 97721528 -24122328 + MYSERV6-int LTR ERVK 8301 8319 -640 6 1330 250 53 0 26 chr11 97721526 97721565 -24122291 + MYSERV16_I-int LTR ERVK 1799 1836 -490 6 1330 901 273 63 76 chr11 97721565 97722035 -24121821 + RLTR12B LTR ERVK 34 528 0 6 1330 1202 190 15 5 chr11 97722089 97722295 -24121561 - B3 SINE B2 -7 209 2 6 1330 1192 49 7 0 chr11 97722395 97722539 -24121317 - B1_Mus2 SINE Alu -2 145 1 6 1330 21 0 0 0 chr11 97722609 97722630 -24121226 + AT_rich Low_complexity Low_complexity 1 21 0 6 1330 1270 34 0 0 chr11 97722630 97722777 -24121079 - B1_Mus2 SINE Alu 0 147 1 6 1330 372 311 42 0 chr11 97722791 97722910 -24120946 - B4 SINE B4 -168 124 1 6 1330 446 0 19 0 chr11 97723064 97723118 -24120738 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 6 1330 507 259 14 56 chr11 97723590 97723733 -24120123 + RSINE1 SINE B4 17 153 -12 6 1330 249 83 0 0 chr11 97723733 97723769 -24120087 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 6 1330 260 220 17 0 chr11 97723796 97723855 -24120001 - B1F1 SINE Alu -1 148 89 6 1330 277 304 3 3 chr11 97723935 97724042 -24119814 + RMER4A LTR ERVK 6 112 -473 6 1330 357 227 80 0 chr11 97724273 97724348 -24119508 - B1_Mur2 SINE Alu -56 93 13 6 1330 244 164 14 43 chr11 97724362 97724432 -24119424 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 6 1330 871 115 0 14 chr11 97724434 97724575 -24119281 - B1_Mur4 SINE Alu 0 150 12 6 1330 593 259 23 0 chr11 97725125 97725256 -24118600 - ID_B1 SINE B4 -19 205 72 6 1330 26 50 0 0 chr11 97725384 97725424 -24118432 + AT_rich Low_complexity Low_complexity 1 40 0 6 1330 274 161 16 0 chr11 97725445 97725507 -24118349 - B3 SINE B2 0 216 154 6 1330 243 88 0 0 chr11 97725537 97725571 -24118285 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1330 252 77 51 0 chr11 97726009 97726048 -24117808 - MLT2C1 LTR ERVL 0 563 523 6 1330 986 39 0 0 chr11 97726183 97726310 -24117546 - B1_Mus2 SINE Alu 0 147 21 6 1330 1393 94 16 5 chr11 97726724 97726917 -24116939 - B2_Mm2 SINE B2 0 195 1 6 1330 817 158 6 82 chr11 97726928 97727087 -24116769 - B1_Mus1 SINE Alu 0 148 2 6 1330 399 244 159 45 chr11 97727115 97727291 -24116565 - B3A SINE B2 0 198 3 6 1330 230 292 119 42 chr11 97727588 97727706 -24116150 - B4A SINE B4 -165 127 1 6 1330 1146 76 81 6 chr11 97727805 97727977 -24115879 - B2_Mm2 SINE B2 -9 186 2 6 1330 676 191 37 22 chr11 97728017 97728151 -24115705 - B1_Mur1 SINE Alu -12 137 2 6 1330 845 224 6 6 chr11 97728329 97728504 -24115352 - B3 SINE B2 -41 175 1 6 1330 249 269 86 130 chr11 97728504 97728655 -24115201 + B4 SINE B4 76 219 -73 6 1330 663 159 12 17 chr11 97728526 97728661 -24115195 + B1_Mus1 SINE Alu 11 148 -1 6 1330 1230 48 0 0 chr11 97728663 97728810 -24115046 + B1_Mus2 SINE Alu 1 147 0 6 1330 213 39 0 0 chr11 97728836 97728862 -24114994 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1330 231 254 0 15 chr11 97729204 97729272 -24114584 + MIR SINE MIR 184 250 -12 6 1330 553 284 67 0 chr11 97729403 97729537 -24114319 + B1_Mus2 SINE Alu 4 146 -1 6 1330 388 203 0 0 chr11 97729613 97729682 -24114174 + ID4_ SINE ID 2 70 -13 6 1330 326 203 16 0 chr11 97730081 97730145 -24113711 - PB1D9 SINE Alu -55 65 1 6 1330 724 166 41 71 chr11 97730195 97730364 -24113492 + B3 SINE B2 2 165 -30 6 1330 728 190 7 28 chr11 97730371 97730512 -24113344 + B1_Mur3 SINE Alu 1 138 -11 6 1330 230 182 0 64 chr11 97730567 97730614 -24113242 + B1_Mus1 SINE Alu 17 60 -88 6 1330 309 280 158 59 chr11 97730612 97730764 -24113092 + B4A SINE B4 63 229 -63 6 1330 435 197 261 17 chr11 97730764 97730883 -24112973 + B1F2 SINE Alu 1 148 -1 6 1330 675 260 34 39 chr11 97730933 97731097 -24112759 + B3 SINE B2 1 160 -56 6 1330 186 43 0 0 chr11 97731097 97731120 -24112736 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1330 675 260 34 39 chr11 97731120 97731159 -24112697 + B3 SINE B2 161 203 -13 6 1330 224 212 0 15 chr11 97731165 97731203 -24112653 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1330 1311 41 106 0 chr11 97731203 97731373 -24112483 + B2_Mm2 SINE B2 2 189 -6 6 1330 224 212 0 15 chr11 97731373 97731401 -24112455 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 1330 477 0 0 0 chr11 97731551 97731604 -24112252 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 6 1330 562 65 39 0 chr11 97731609 97731686 -24112170 - B2_Mm2 SINE B2 -115 80 1 6 1330 206 81 0 26 chr11 97731899 97731927 -24111929 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 6 1330 1174 68 0 14 chr11 97731927 97732075 -24111781 - B1_Mm SINE Alu 0 147 2 6 1330 206 81 0 26 chr11 97732075 97732084 -24111772 + (TTTTG)n Simple_repeat Simple_repeat 5 13 0 6 1330 675 231 143 5 chr11 97732490 97732686 -24111170 - ID_B1 SINE B4 -1 223 1 6 1330 483 276 54 27 chr11 97732727 97732876 -24110980 + RSINE1 SINE B4 13 165 0 6 1330 1167 55 0 14 chr11 97732914 97733062 -24110794 - B1_Mm SINE Alu 0 147 2 6 1330 241 305 95 0 chr11 97733105 97733200 -24110656 - MER44B DNA MER2_type -413 137 34 6 1330 663 176 84 0 chr11 97733323 97733454 -24110402 + B1_Mus1 SINE Alu 1 142 -6 6 1330 694 253 53 32 chr11 97733468 97733656 -24110200 + B3A SINE B2 1 192 -6 6 1330 1136 29 43 0 chr11 97733681 97733821 -24110035 + B1_Mm SINE Alu 2 147 0 6 1330 351 0 0 0 chr11 97733821 97733860 -24109996 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1330 1019 246 10 10 chr11 97733869 97734074 -24109782 + B3 SINE B2 1 205 -11 6 1330 782 154 40 53 chr11 97734691 97734842 -24109014 + B1_Mur3 SINE Alu 1 149 0 6 1330 699 156 39 0 chr11 97734868 97734996 -24108860 + B1_Mur4 SINE Alu 18 150 0 6 1330 726 236 7 0 chr11 97735115 97735263 -24108593 - B1_Mur3 SINE Alu 0 149 1 6 1330 891 171 206 0 chr11 97735273 97735443 -24108413 - B3 SINE B2 -11 205 1 6 1330 1382 38 0 21 chr11 97736474 97736663 -24107193 - B2_Mm1a SINE B2 0 193 9 6 1330 716 230 14 0 chr11 97736806 97736945 -24106911 + B1_Mur4 SINE Alu 1 141 -9 6 1330 543 281 93 44 chr11 97736984 97737189 -24106667 - B3 SINE B2 0 216 2 6 1330 306 194 0 0 chr11 97737196 97737258 -24106598 + T-rich Low_complexity Low_complexity 4 65 0 6 1330 1213 14 7 14 chr11 97737287 97737434 -24106422 - B1_Mus1 SINE Alu 0 148 3 6 1330 1331 102 43 0 chr11 97737832 97738019 -24105837 + B2_Mm2 SINE B2 1 195 0 6 1330 1186 74 0 0 chr11 97738114 97738262 -24105594 + B1_Mus1 SINE Alu 1 148 0 6 1330 825 157 63 14 chr11 97738393 97738535 -24105321 + B1_Mur3 SINE Alu 1 149 0 6 1330 219 39 53 105 chr11 97738539 97738596 -24105260 + A-rich Low_complexity Low_complexity 3 56 0 6 1330 271 296 63 27 chr11 97738754 97738865 -24104991 - PB1 SINE Alu -12 115 1 6 1330 566 245 40 7 chr11 97738865 97738939 -24104917 - ID SINE ID -144 80 2 6 1330 313 306 48 82 chr11 97738949 97739095 -24104761 - B1F SINE Alu -8 141 1 6 1330 559 202 20 1 chr11 97739598 97739727 -24104129 + B1F SINE Alu 17 149 0 6 1330 21 89 0 0 chr11 97739747 97739803 -24104053 + AT_rich Low_complexity Low_complexity 1 56 0 6 1330 613 163 68 23 chr11 97739904 97740036 -24103820 - B1_Mus1 SINE Alu 0 148 11 6 1330 292 343 56 0 chr11 97739942 97740050 -24103806 - B4 SINE B4 -98 194 81 6 1330 351 260 73 0 chr11 97740073 97740169 -24103687 - PB1D10 SINE Alu 0 117 15 6 1330 1329 91 48 0 chr11 97740394 97740580 -24103276 + B2_Mm2 SINE B2 1 195 0 6 1330 257 222 16 0 chr11 97741015 97741078 -24102778 - ID SINE ID -159 65 2 6 1330 758 171 64 0 chr11 97741711 97741851 -24102005 - B1_Mur2 SINE Alu 0 149 1 6 1330 1297 79 39 11 chr11 97741883 97742063 -24101793 + B2_Mm2 SINE B2 1 185 -10 6 1330 180 0 0 0 chr11 97742111 97742131 -24101725 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6 1330 1555 23 23 0 chr11 97742131 97742308 -24101548 - B2_Mm1a SINE B2 -11 182 2 6 1330 324 0 0 0 chr11 97742312 97742348 -24101508 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 7 1330 1577 23 0 11 chr11 97742348 97742527 -24101329 - B2_Mm1a SINE B2 -15 178 2 7 1330 1488 49 16 0 chr11 97742532 97742717 -24101139 - B2_Mm1t SINE B2 -5 188 1 7 1330 29 28 0 0 chr11 97742720 97742756 -24101100 + AT_rich Low_complexity Low_complexity 1 36 0 7 1330 839 76 0 0 chr11 97742765 97742884 -24100972 + B1_Mus1 SINE Alu 30 148 0 7 1330 252 196 43 0 chr11 97742974 97743020 -24100836 - PB1D7 SINE Alu -64 56 9 7 1330 857 57 8 0 chr11 97743493 97743615 -24100241 + B1_Mm SINE Alu 25 147 0 7 1330 572 185 0 27 chr11 97743679 97743790 -24100066 + B1_Mus1 SINE Alu 40 147 -1 7 1330 206 260 0 0 chr11 97744129 97744179 -24099677 + T-rich Low_complexity Low_complexity 1 50 0 7 1330 660 137 0 82 chr11 97744181 97744316 -24099540 - B1_Mur4 SINE Alu -21 129 6 7 1330 322 202 105 121 chr11 97744552 97744676 -24099180 + B1_Mur3 SINE Alu 13 134 -15 7 1330 214 163 41 0 chr11 97744681 97744730 -24099126 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1330 201 108 0 0 chr11 97745326 97745363 -24098493 + (TAAAAA)n Simple_repeat Simple_repeat 1 37 0 7 1330 1263 80 23 6 chr11 97746030 97746207 -24097649 - B2_Mm2 SINE B2 -14 181 2 7 1330 317 250 35 53 chr11 97746443 97746557 -24097299 - PB1D10 SINE Alu -5 112 1 7 1330 254 280 40 13 chr11 97746776 97746852 -24097004 + ID4_ SINE ID 2 79 -4 7 1330 234 62 0 0 chr11 97746986 97747018 -24096838 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1330 524 197 19 39 chr11 97747206 97747346 -24096510 + ID_B1 SINE B4 90 221 -3 7 1330 2331 141 100 31 chr11 97747361 97747753 -24096103 - RLTR28 LTR ERVL 0 524 95 7 1330 982 78 47 0 chr11 97747753 97747882 -24095974 + B1_Mm SINE Alu 2 136 -11 7 1330 377 39 0 19 chr11 97747884 97747936 -24095920 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1330 2331 141 100 31 chr11 97747936 97748030 -24095826 - RLTR28 LTR ERVL -430 94 1 7 1330 278 245 0 0 chr11 97748036 97748089 -24095767 + ID4_ SINE ID 11 63 -20 7 1330 1102 62 27 14 chr11 97748172 97748318 -24095538 + B1_Mus1 SINE Alu 1 148 0 7 1330 267 31 0 0 chr11 97748318 97748350 -24095506 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1330 858 190 28 2 chr11 97748350 97748526 -24095330 + B3 SINE B2 27 216 0 7 1330 23 0 0 0 chr11 97748529 97748552 -24095304 + AT_rich Low_complexity Low_complexity 1 23 0 7 1330 488 121 11 11 chr11 97748593 97748685 -24095171 - B2_Mm1a SINE B2 -5 188 97 7 1330 1730 170 72 102 chr11 97748777 97749124 -24094732 - RLTR28B LTR ERVL 0 481 122 7 1330 1090 113 77 0 chr11 97749124 97749292 -24094564 + B2_Mm2 SINE B2 1 181 -14 7 1330 1730 170 72 102 chr11 97749292 97749403 -24094453 - RLTR28B LTR ERVL -360 121 37 7 1330 25 0 0 0 chr11 97749486 97749511 -24094345 + AT_rich Low_complexity Low_complexity 1 25 0 7 1330 551 38 13 0 chr11 97749511 97749590 -24094266 + L1Md_F2 LINE L1 6501 6580 -2 7 1330 1094 95 0 13 chr11 97749600 97749750 -24094106 + B1_Mus1 SINE Alu 1 148 0 7 1330 2737 138 71 10 chr11 97749776 97750283 -24093573 + RMER15 LTR ERVL 17 554 -21 7 1330 225 324 15 0 chr11 97750690 97750758 -24093098 + ID4_ SINE ID 2 70 -13 7 1330 737 118 234 33 chr11 97750856 97750953 -24092903 + URR1A DNA MER1_type 1 138 -88 7 1330 2376 144 15 23 chr11 97750953 97751350 -24092506 + ORR1B1 LTR MaLR 1 394 0 7 1330 737 118 234 33 chr11 97751350 97751436 -24092420 + URR1A DNA MER1_type 139 221 -5 7 1330 752 247 75 83 chr11 97751442 97751720 -24092136 + B4 SINE B4 17 292 0 7 1330 778 163 64 0 chr11 97751859 97752000 -24091856 - B1_Mur4 SINE Alu 0 150 1 7 1330 705 94 22 0 chr11 97752007 97752145 -24091711 + (TG)n Simple_repeat Simple_repeat 1 141 0 7 1330 1560 141 48 146 chr11 97752194 97752592 -24091264 - RLTR15 LTR ERVK 0 359 1 7 1330 238 290 25 116 chr11 97752593 97752714 -24091142 + RSINE1 SINE B4 56 165 0 7 1330 291 217 0 0 chr11 97752789 97752849 -24091007 + ID4 SINE ID 13 72 -11 7 1330 681 13 0 0 chr11 97752861 97752939 -24090917 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1330 1868 151 88 3 chr11 97753107 97753459 -24090397 - RMER15 LTR ERVL -3 572 191 7 1330 3503 125 50 16 chr11 97753629 97754248 -24089608 + RLTR33 LTR ERVK 1 640 -38 7 1330 660 145 214 6 chr11 97754253 97754426 -24089430 - RMER15 LTR ERVL -366 209 1 7 1330 303 303 35 14 chr11 97754483 97754627 -24089229 + B1F SINE Alu 2 148 -1 7 1330 753 216 14 85 chr11 97754904 97755116 -24088740 + B3A SINE B2 2 198 0 7 1330 534 314 31 54 chr11 97755171 97755393 -24088463 + Tigger5 DNA MER2_type 2 218 -2188 7 1330 1191 231 40 200 chr11 97755401 97755985 -24087871 - RMER19C LTR ERVK -1 610 106 7 1330 1169 76 0 0 chr11 97755985 97756129 -24087727 + B1_Mus2 SINE Alu 4 147 0 7 1330 1191 231 40 200 chr11 97756129 97756270 -24087586 - RMER19C LTR ERVK -506 105 1 7 1330 635 261 83 0 chr11 97756339 97756519 -24087337 - B4 SINE B4 0 292 98 7 1330 265 79 0 0 chr11 97756543 97756581 -24087275 + RLTR28B LTR ERVL 68 105 -376 7 1330 753 148 0 0 chr11 97756581 97756709 -24087147 + (TTTTC)n Simple_repeat Simple_repeat 1 128 0 7 1330 1700 171 98 12 chr11 97756709 97756749 -24087107 + RLTR28 LTR ERVL 49 91 -433 7 1330 822 150 13 33 chr11 97756749 97756901 -24086955 - B1_Mur3 SINE Alu 0 149 1 7 1330 1700 171 98 12 chr11 97756901 97757058 -24086798 + RLTR28 LTR ERVL 92 265 -259 7 1330 270 0 0 0 chr11 97757058 97757088 -24086768 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1330 1700 171 98 12 chr11 97757088 97757308 -24086548 + RLTR28 LTR ERVL 266 502 -22 7 1330 998 221 34 0 chr11 97757450 97757658 -24086198 - B3 SINE B2 0 216 2 7 1330 523 191 52 9 chr11 97757887 97758003 -24085853 + B1_Mm SINE Alu 26 146 -1 7 1330 396 179 0 0 chr11 97758460 97758538 -24085318 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 7 1330 744 106 8 0 chr11 97758560 97758692 -24085164 - RLTR28 LTR ERVL -33 491 359 7 1330 323 183 0 0 chr11 97758762 97758822 -24085034 - RLTR28 LTR ERVL -178 346 287 7 1330 1149 112 6 0 chr11 97758825 97759003 -24084853 - B2_Mm1t SINE B2 -6 187 9 7 1330 1659 108 55 17 chr11 97759003 97759294 -24084562 - RLTR28 LTR ERVL -222 302 1 7 1330 272 211 128 26 chr11 97759294 97759372 -24084484 + B1F2 SINE Alu 12 97 -52 7 1330 405 237 136 0 chr11 97759427 97759545 -24084311 + B4A SINE B4 141 274 -18 7 1330 367 189 32 43 chr11 97759652 97759746 -24084110 + L1M LINE L1 5316 5408 -936 7 1330 505 295 11 80 chr11 97759789 97760065 -24083791 + B4A SINE B4 32 288 -4 7 1330 591 94 0 0 chr11 97760101 97760197 -24083659 + (GA)n Simple_repeat Simple_repeat 2 97 0 7 1330 356 246 34 26 chr11 97760215 97760332 -24083524 + L1M LINE L1 5434 5551 -782 7 1330 697 177 23 11 chr11 97760396 97760573 -24083283 + CT-rich Low_complexity Low_complexity 2 180 0 7 1330 326 216 27 0 chr11 97760585 97760659 -24083197 - PB1D10 SINE Alu -5 112 37 7 1330 261 236 40 27 chr11 97760732 97760806 -24083050 - B1F SINE Alu -43 106 32 7 1330 388 318 0 26 chr11 97760854 97760967 -24082889 + PB1D10 SINE Alu 6 115 -2 7 1330 863 142 7 39 chr11 97761535 97761689 -24082167 - B1_Mur4 SINE Alu -1 149 1 7 1330 238 200 20 0 chr11 97761719 97761769 -24082087 - B3A SINE B2 -82 116 66 7 1330 210 242 31 31 chr11 97761933 97761997 -24081859 - ID SINE ID -139 85 22 7 1330 215 208 57 0 chr11 97762449 97762502 -24081354 + B3 SINE B2 98 153 -63 7 1330 261 0 0 0 chr11 97762502 97762531 -24081325 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1330 1200 87 0 0 chr11 97762531 97762862 -24080994 + (TGGA)n Simple_repeat Simple_repeat 1 331 0 7 1330 613 193 9 17 chr11 97762879 97762995 -24080861 + PB1D9 SINE Alu 4 118 -2 7 1330 251 290 59 93 chr11 97763095 97763213 -24080643 + PB1D10 SINE Alu 2 115 -2 7 1330 757 202 61 51 chr11 97763520 97763734 -24080122 - B3 SINE B2 0 216 1 7 1330 188 34 0 33 chr11 97763772 97763802 -24080054 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1330 1155 49 14 0 chr11 97763805 97763947 -24079909 - B1_Mur4 SINE Alu -6 144 1 7 1330 201 171 0 0 chr11 97764096 97764131 -24079725 + T-rich Low_complexity Low_complexity 1 35 0 7 1330 366 115 0 0 chr11 97764421 97764482 -24079374 + (GGGGA)n Simple_repeat Simple_repeat 4 64 0 7 1330 378 143 0 0 chr11 97764628 97764691 -24079165 + (TCC)n Simple_repeat Simple_repeat 2 64 0 7 1330 279 0 0 0 chr11 97764744 97764775 -24079081 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1330 983 140 6 0 chr11 97765003 97765174 -24078682 + (CCTG)n Simple_repeat Simple_repeat 4 175 0 7 1330 367 270 11 11 chr11 97765174 97765264 -24078592 - PB1D7 SINE Alu -9 111 22 7 1330 890 50 8 0 chr11 97765267 97765386 -24078470 + B1_Mus1 SINE Alu 29 148 0 7 1330 205 244 11 22 chr11 97765472 97765564 -24078292 + (TATG)n Simple_repeat Simple_repeat 4 94 0 7 1330 1398 208 107 3 chr11 97765567 97765895 -24077961 - ORR1D2 LTR MaLR -8 362 1 7 1330 522 0 0 0 chr11 97765909 97765967 -24077889 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1330 191 250 120 74 chr11 97766319 97766427 -24077429 + L2b LINE L2 3027 3139 -236 7 1330 1030 209 27 18 chr11 97766600 97766819 -24077037 - ID_B1 SINE B4 -1 223 3 7 1330 840 61 0 0 chr11 97767749 97767863 -24075993 + B1_Mm SINE Alu 34 147 0 7 1330 240 59 0 0 chr11 97767863 97767897 -24075959 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1330 385 198 0 80 chr11 97767897 97767985 -24075871 - B3A SINE B2 -117 81 1 7 1330 940 249 84 31 chr11 97768006 97768329 -24075527 + MTE2a LTR MaLR 39 378 -1 7 1330 289 251 5 82 chr11 97769012 97769207 -24074649 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 7 1330 203 204 0 39 chr11 97769692 97769743 -24074113 + CT-rich Low_complexity Low_complexity 2 50 0 7 1330 206 216 0 0 chr11 97770111 97770148 -24073708 + MIRm SINE MIR 216 252 -24 7 1330 190 189 0 51 chr11 97770201 97770240 -24073616 + MIRm SINE MIR 219 255 -21 8 1330 1260 34 0 0 chr11 97770561 97770707 -24073149 + B1_Mm SINE Alu 2 147 0 8 1330 254 308 88 6 chr11 97770797 97770957 -24072899 + L1MC5 LINE L1 7703 7875 -86 8 1330 284 254 133 63 chr11 97771052 97771195 -24072661 + B4 SINE B4 106 258 -34 8 1330 213 108 0 0 chr11 97771202 97771239 -24072617 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1330 272 49 15 76 chr11 97771714 97771780 -24072076 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 8 1330 1251 34 0 0 chr11 97771791 97771938 -24071918 - B1_Mm SINE Alu 0 147 1 8 1330 817 167 7 0 chr11 97771942 97772086 -24071770 - B1_Mur4 SINE Alu 0 150 6 8 1330 250 173 58 0 chr11 97772121 97772173 -24071683 - PB1D7 SINE Alu 0 120 66 8 1330 550 244 8 22 chr11 97772127 97772261 -24071595 - ID_B1 SINE B4 -6 218 87 8 1330 330 67 0 0 chr11 97772707 97772752 -24071104 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1330 251 336 79 16 chr11 97773113 97773240 -24070616 + L3 LINE CR1 4303 4437 -52 8 1330 584 253 13 33 chr11 97773421 97773572 -24070284 - RSINE1 SINE B4 0 165 18 8 1330 406 269 37 0 chr11 97773595 97773703 -24070153 - PB1D7 SINE Alu -7 113 2 8 1330 371 254 105 0 chr11 97773717 97773831 -24070025 - ID_B1 SINE B4 -3 221 96 8 1330 486 0 0 0 chr11 97773831 97773885 -24069971 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1330 380 242 0 40 chr11 97773926 97774025 -24069831 - B3A SINE B2 -102 96 2 8 1330 843 39 0 0 chr11 97774036 97774139 -24069717 + (TTC)n Simple_repeat Simple_repeat 3 105 0 8 1330 537 242 57 32 chr11 97774213 97774371 -24069485 + RSINE1 SINE B4 3 164 -1 8 1330 230 0 33 0 chr11 97775475 97775505 -24068351 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 8 1330 522 0 0 0 chr11 97775821 97775879 -24067977 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1330 392 37 19 0 chr11 97775879 97775933 -24067923 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1330 299 194 0 132 chr11 97775985 97776068 -24067788 - PB1D10 SINE Alu -5 112 41 8 1330 1767 155 88 150 chr11 97776212 97776353 -24067503 - RMER16 LTR ERVK -1 532 416 8 1330 1137 88 0 0 chr11 97776353 97776500 -24067356 - B1_Mus1 SINE Alu -1 147 1 8 1330 1767 155 88 150 chr11 97776500 97776525 -24067331 - RMER16 LTR ERVK -118 415 415 8 1330 1130 77 0 0 chr11 97776525 97776668 -24067188 - B1_Mus1 SINE Alu -1 147 5 8 1330 1767 155 88 150 chr11 97776668 97777000 -24066856 - RMER16 LTR ERVK -118 415 64 8 1330 367 35 35 0 chr11 97778307 97778364 -24065492 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1330 2434 133 71 0 chr11 97778731 97779099 -24064757 + ORR1B1 LTR MaLR 1 394 0 8 1330 1608 178 107 13 chr11 97779159 97779534 -24064322 + RMER17C LTR ERVK 1 410 0 8 1331 970 125 0 7 chr11 97779865 97780010 -24063846 + B1_Mus1 SINE Alu 1 144 -4 8 1331 288 91 0 0 chr11 97780010 97780054 -24063802 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 8 1331 180 111 0 0 chr11 97780054 97780081 -24063775 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8 1331 484 278 62 7 chr11 97780312 97780457 -24063399 - RSINE1 SINE B4 -11 154 2 8 1331 1024 159 128 31 chr11 97780653 97780848 -24063008 + B3 SINE B2 3 216 0 8 1331 359 183 12 0 chr11 97780857 97780939 -24062917 + (CAT)n Simple_repeat Simple_repeat 3 85 0 8 1331 277 174 137 0 chr11 97781267 97781339 -24062517 + MIRc SINE MIR 35 114 -94 8 1331 217 162 0 0 chr11 97781399 97781436 -24062420 + MIRc SINE MIR 119 155 -113 8 1331 249 422 0 0 chr11 97781652 97781742 -24062114 - MER81 DNA AcHobo -23 91 2 8 1331 375 241 55 33 chr11 97781828 97781972 -24061884 - MIRc SINE MIR -110 158 12 8 1331 458 114 0 0 chr11 97782456 97782526 -24061330 - B1_Mus2 SINE Alu -6 141 72 8 1331 534 236 0 9 chr11 97782930 97783041 -24060815 - ID_B1 SINE B4 -1 223 114 8 1331 336 48 0 0 chr11 97783070 97783112 -24060744 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1331 679 210 0 0 chr11 97783509 97783628 -24060228 - RSINE1 SINE B4 -37 128 10 8 1331 334 247 26 89 chr11 97784067 97784258 -24059598 + C-rich Low_complexity Low_complexity 2 180 0 8 1331 379 152 294 0 chr11 97784877 97784969 -24058887 - PB1D7 SINE Alu 0 120 2 8 1331 983 38 15 22 chr11 97785996 97786132 -24057724 + B1_Mm SINE Alu 13 147 0 8 1331 207 0 0 0 chr11 97786132 97786155 -24057701 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1331 597 262 0 0 chr11 97786264 97786386 -24057470 - B1F1 SINE Alu -26 123 2 8 1331 184 355 32 21 chr11 97786538 97786633 -24057223 + MER5A DNA MER1_type 36 131 -58 8 1331 779 222 12 47 chr11 97787584 97787754 -24056102 + RSINE1 SINE B4 2 165 0 8 1331 627 251 29 21 chr11 97787758 97787920 -24055936 + ID_B1 SINE B4 77 228 -64 8 1331 415 176 38 92 chr11 97787908 97788039 -24055817 + MT2B LTR ERVL 155 278 -323 8 1331 798 143 0 8 chr11 97787931 97788058 -24055798 + B1_Mur4 SINE Alu 16 141 -9 8 1331 324 0 0 0 chr11 97788059 97788095 -24055761 + (TAA)n Simple_repeat Simple_repeat 1 36 0 8 1331 523 308 44 27 chr11 97788095 97788329 -24055527 + MIR SINE MIR 22 267 -1 8 1331 190 323 0 58 chr11 97788566 97788635 -24055221 - MIR SINE MIR -117 145 81 8 1331 192 287 113 31 chr11 97789971 97790068 -24053788 - MIRm SINE MIR 0 276 172 8 1331 405 0 0 0 chr11 97790175 97790220 -24053636 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1331 207 0 0 0 chr11 97790232 97790255 -24053601 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8 1331 1153 187 9 41 chr11 97791188 97791406 -24052450 + B3 SINE B2 1 211 -5 8 1331 450 227 16 98 chr11 97791535 97791657 -24052199 - PB1D10 SINE Alu -1 116 5 8 1331 232 246 155 17 chr11 97791666 97791782 -24052074 + MIRb SINE MIR 106 237 -31 8 1331 848 188 0 0 chr11 97792307 97792445 -24051411 + B1_Mur2 SINE Alu 2 139 -10 8 1331 706 100 9 9 chr11 97792468 97792579 -24051277 + ID_B1 SINE B4 108 218 -6 8 1331 419 252 0 75 chr11 97792585 97792689 -24051167 + PB1D7 SINE Alu 7 102 -18 8 1331 1305 177 138 53 chr11 97792689 97793029 -24050827 + ORR1D1 LTR MaLR 1 369 -5 8 1331 233 250 78 13 chr11 97793060 97793137 -24050719 + ID4_ SINE ID 2 83 0 8 1331 360 0 0 0 chr11 97793154 97793194 -24050662 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1331 391 220 1 64 chr11 97793710 97793821 -24050035 + PB1 SINE Alu 17 123 -4 8 1331 507 240 107 0 chr11 97793965 97794086 -24049770 + B1_Mur4 SINE Alu 15 148 -2 8 1331 652 112 8 25 chr11 97794091 97794210 -24049646 + BC1_Mm scRNA scRNA 1 117 -35 8 1331 183 80 0 0 chr11 97794215 97794240 -24049616 + (CAA)n Simple_repeat Simple_repeat 2 26 0 8 1331 850 159 32 96 chr11 97794340 97794452 -24049404 + B2_Mm2 SINE B2 1 111 -84 8 1331 1299 27 0 0 chr11 97794452 97794599 -24049257 + B1_Mus1 SINE Alu 2 148 0 8 1331 850 159 32 96 chr11 97794599 97794674 -24049182 + B2_Mm2 SINE B2 112 176 -19 8 1331 949 91 21 0 chr11 97796281 97796424 -24047432 + B1_Mus1 SINE Alu 2 147 -1 8 1331 857 192 0 18 chr11 97796512 97796676 -24047180 + B3 SINE B2 52 212 -4 8 1331 674 220 123 12 chr11 97797522 97797709 -24046147 + B3 SINE B2 24 216 0 8 1331 1333 115 16 10 chr11 97797710 97797903 -24045953 + B2_Mm2 SINE B2 1 194 -1 8 1331 186 133 0 0 chr11 97797922 97797952 -24045904 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 8 1331 277 274 241 28 chr11 97798029 97798137 -24045719 - ID_B1 SINE B4 -16 208 82 8 1331 216 0 0 0 chr11 97798137 97798161 -24045695 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1331 952 212 44 5 chr11 97798182 97798386 -24045470 - B3 SINE B2 -3 213 2 8 1331 826 216 0 7 chr11 97798403 97798552 -24045304 - B1_Mur2 SINE Alu 0 149 2 8 1331 720 139 0 16 chr11 97800065 97800189 -24043667 - B1_Mur3 SINE Alu -2 147 26 8 1331 584 316 6 0 chr11 97800251 97800409 -24043447 + MTEa LTR MaLR 1 159 -220 8 1331 442 216 111 33 chr11 97800422 97800575 -24043281 + MTEa LTR MaLR 210 374 -5 8 1331 1263 88 37 42 chr11 97800867 97801058 -24042798 - B2_Mm2 SINE B2 -5 190 1 8 1331 395 266 32 0 chr11 97801173 97801267 -24042589 - PB1D10 SINE Alu -16 101 5 8 1331 298 287 110 39 chr11 97801629 97801756 -24042100 + B1F1 SINE Alu 1 136 -13 8 1331 220 282 28 14 chr11 97801943 97802015 -24041841 - MIRm SINE MIR -101 175 103 8 1331 1089 111 9 132 chr11 97802525 97802744 -24041112 - B2_Mm2 SINE B2 -3 192 1 8 1331 306 0 0 0 chr11 97802756 97802790 -24041066 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 8 1331 1879 219 42 25 chr11 97802791 97803199 -24040657 - Lx5 LINE L1 -18 7032 6618 8 1331 268 304 0 12 chr11 97803403 97803483 -24040373 + MIR SINE MIR 38 116 -92 8 1331 222 213 0 60 chr11 97804571 97804621 -24039235 - B1_Mur1 SINE Alu -22 127 81 8 1331 1999 115 41 88 chr11 97804677 97804948 -24038908 + ORR1A2 LTR MaLR 1 268 -59 8 1331 1146 83 7 0 chr11 97804948 97805093 -24038763 + B1_Mus1 SINE Alu 1 146 -2 8 1331 248 0 31 0 chr11 97805093 97805125 -24038731 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 8 1331 1398 74 21 26 chr11 97805134 97805327 -24038529 + B2_Mm2 SINE B2 1 192 -3 8 1331 1999 115 41 88 chr11 97805327 97805387 -24038469 + ORR1A2 LTR MaLR 269 326 -1 8 1331 244 307 39 4 chr11 97806154 97806280 -24037576 - MIR SINE MIR -27 241 104 8 1331 297 247 16 105 chr11 97806635 97806767 -24037089 + B1F1 SINE Alu 1 118 -2 9 1331 1745 16 0 0 chr11 97806860 97807053 -24036803 + B2_Mm1a SINE B2 1 193 0 9 1331 1327 75 29 0 chr11 97807054 97807227 -24036629 - B2_Mm1t SINE B2 -14 179 2 9 1331 376 222 12 0 chr11 97807228 97807309 -24036547 - MTD LTR MaLR -10 409 328 9 1331 517 260 17 124 chr11 97807315 97807548 -24036308 - MTD LTR MaLR -211 208 1 9 1331 1023 99 28 7 chr11 97807614 97807751 -24036105 + B1_Mus1 SINE Alu 2 142 -6 9 1331 320 23 0 43 chr11 97807751 97807797 -24036059 + (CAA)n Simple_repeat Simple_repeat 2 45 0 9 1331 432 0 0 0 chr11 97807884 97807932 -24035924 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1331 213 208 55 36 chr11 97808018 97808073 -24035783 - ID4_ SINE ID -20 63 8 9 1331 278 227 167 49 chr11 97808091 97808193 -24035663 - PB1D10 SINE Alu -3 114 1 9 1331 25 0 0 0 chr11 97808200 97808225 -24035631 + AT_rich Low_complexity Low_complexity 1 25 0 9 1331 221 182 18 0 chr11 97809014 97809069 -24034787 + G-rich Low_complexity Low_complexity 3 58 0 9 1331 275 243 0 41 chr11 97809100 97809173 -24034683 + G-rich Low_complexity Low_complexity 6 75 0 9 1331 204 40 0 0 chr11 97809274 97809299 -24034557 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 9 1331 706 65 0 0 chr11 97809679 97809772 -24034084 - B1_Mm SINE Alu -2 145 53 9 1331 520 186 29 0 chr11 97809771 97809873 -24033983 + B1_Mur4 SINE Alu 14 118 -32 9 1331 399 21 0 0 chr11 97809875 97809923 -24033933 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1331 500 254 101 62 chr11 97809941 97810101 -24033755 - ID_B1 SINE B4 -46 246 77 9 1331 843 158 0 0 chr11 97810582 97810912 -24032944 + (TG)n Simple_repeat Simple_repeat 1 330 0 9 1331 666 294 66 0 chr11 97810919 97811130 -24032726 - B4A SINE B4 0 292 68 9 1331 320 280 10 39 chr11 97811165 97811269 -24032587 - B4A SINE B4 -187 105 5 9 1331 318 240 105 26 chr11 97811297 97811434 -24032422 - PB1D10 SINE Alu 0 149 7 9 1331 255 238 29 44 chr11 97811750 97811833 -24032023 - ID4_ SINE ID -58 94 13 9 1331 290 246 15 0 chr11 97812271 97812336 -24031520 + MER2 DNA MER2_type 273 338 -7 9 1331 1176 290 47 19 chr11 97812349 97812711 -24031145 + MTEb LTR MaLR 8 379 0 9 1331 324 301 28 28 chr11 97812876 97812982 -24030874 + PB1 SINE Alu 20 125 -2 9 1331 396 0 0 0 chr11 97812984 97813028 -24030828 + (GA)n Simple_repeat Simple_repeat 1 44 0 9 1331 1159 40 7 0 chr11 97813030 97813180 -24030676 + B2_Mm2 SINE B2 1 151 -44 9 1331 275 0 0 28 chr11 97813180 97813216 -24030640 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 9 1331 313 176 147 0 chr11 97813265 97813333 -24030523 + B3 SINE B2 2 79 -137 9 1331 367 190 233 29 chr11 97813329 97813432 -24030424 + B1_Mus1 SINE Alu 19 142 -6 9 1331 2759 130 83 68 chr11 97813589 97814191 -24029665 + RMER6A LTR ERVK 25 635 -121 9 1331 841 142 89 0 chr11 97814167 97814336 -24029520 + B2_Mm2 SINE B2 12 195 0 9 1331 787 161 130 0 chr11 97814318 97814480 -24029376 + RMER6A LTR ERVK 574 756 0 9 1331 210 306 106 0 chr11 97814811 97814896 -24028960 - MIR SINE MIR -59 149 56 9 1331 288 167 0 0 chr11 97815753 97815807 -24028049 - URR1B DNA MER1_type 0 225 172 9 1331 612 240 143 23 chr11 97819018 97819193 -24024663 + B3A SINE B2 3 198 0 9 1331 799 62 100 15 chr11 97819277 97819407 -24024449 - B1_Mur4 SINE Alu 0 150 10 9 1331 251 232 114 14 chr11 97819419 97819489 -24024367 - B1_Mur1 SINE Alu -8 141 65 9 1331 546 256 12 15 chr11 97819466 97819478 -24024378 - ID_B1 SINE B4 -30 194 141 9 1331 256 277 81 89 chr11 97819478 97819601 -24024255 - MT2B LTR ERVL -344 257 136 9 1331 546 256 12 15 chr11 97819601 97819619 -24024237 - ID_B1 SINE B4 -30 140 45 9 1331 543 221 45 22 chr11 97819692 97819826 -24024030 + B1F1 SINE Alu 5 141 -8 9 1331 459 348 72 59 chr11 97820129 97820268 -24023588 + MLT1C LTR MaLR 19 159 -308 9 1331 665 162 106 15 chr11 97820268 97820400 -24023456 - B1_Mus1 SINE Alu -2 146 3 9 1331 459 348 72 59 chr11 97820400 97820581 -24023275 + MLT1C LTR MaLR 160 343 -124 9 1331 1008 48 0 0 chr11 97820974 97821100 -24022756 + (TCC)n Simple_repeat Simple_repeat 1 126 0 9 1331 335 339 0 17 chr11 97821103 97821220 -24022636 + MLT1J LTR MaLR 257 371 -141 9 1331 385 121 61 0 chr11 97821458 97821524 -24022332 + ID_B1 SINE B4 142 211 -13 9 1331 1108 218 14 0 chr11 97821705 97821916 -24021940 - B3 SINE B2 0 216 3 9 1331 300 394 6 0 chr11 97822929 97823094 -24020762 + (CA)n Simple_repeat Simple_repeat 1 166 0 9 1331 220 337 0 11 chr11 97823224 97823317 -24020539 + (CA)n Simple_repeat Simple_repeat 1 92 0 9 1331 1257 27 0 7 chr11 97823392 97823540 -24020316 - B1_Mus2 SINE Alu 0 147 1 9 1331 249 333 0 47 chr11 97823577 97823662 -24020194 - ID_B1 SINE B4 -63 161 81 9 1331 1274 92 6 11 chr11 97824232 97824407 -24019449 - B2_Mm1t SINE B2 -18 175 2 9 1331 1077 140 0 0 chr11 97824423 97824601 -24019255 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 9 1331 258 32 0 0 chr11 97824601 97824632 -24019224 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1331 473 289 45 70 chr11 97824633 97824655 -24019201 - ID_B1 SINE B4 -46 246 176 9 1331 785 187 7 0 chr11 97824655 97824794 -24019062 - B1_Mur2 SINE Alu -5 144 5 9 1331 473 289 45 70 chr11 97824794 97824830 -24019026 - ID_B1 SINE B4 -46 175 49 9 1331 1171 75 0 0 chr11 97825826 97825973 -24017883 + B1_Mus1 SINE Alu 1 147 -1 9 1331 1258 69 4 4 chr11 97825973 97826236 -24017620 + (GGAGA)n Simple_repeat Simple_repeat 1 263 0 9 1331 657 38 0 0 chr11 97826237 97826317 -24017539 + (GAGAA)n Simple_repeat Simple_repeat 1 80 0 9 1331 1335 92 32 0 chr11 97827285 97827470 -24016386 - B2_Mm1t SINE B2 -1 192 2 9 1331 1349 109 0 15 chr11 97827500 97827696 -24016160 + B2_Mm2 SINE B2 2 194 -1 9 1331 252 0 0 0 chr11 97827696 97827724 -24016132 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1331 390 263 25 34 chr11 97828887 97828914 -24014942 + MT2B LTR ERVL 138 163 -438 9 1331 616 140 65 0 chr11 97828914 97829021 -24014835 + B1_Mm SINE Alu 2 115 -32 9 1331 508 235 10 0 chr11 97829021 97829123 -24014733 + B1F1 SINE Alu 38 140 -9 9 1331 285 29 0 0 chr11 97829123 97829157 -24014699 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 9 1331 581 237 38 0 chr11 97829170 97829301 -24014555 + B1F SINE Alu 14 149 0 9 1331 268 300 0 12 chr11 97829504 97829585 -24014271 + MIRb SINE MIR 43 122 -146 9 1331 363 252 90 10 chr11 97829595 97829695 -24014161 + RSINE1 SINE B4 3 110 -55 9 1331 378 0 0 0 chr11 97829732 97829774 -24014082 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1331 253 157 78 0 chr11 97830717 97830768 -24013088 - RSINE1 SINE B4 -55 110 56 9 1331 1263 222 137 26 chr11 97830768 97831119 -24012737 - MTD LTR MaLR -29 390 1 9 1331 248 312 12 78 chr11 97831297 97831462 -24012394 + B4 SINE B4 100 253 -39 9 1331 748 135 164 12 chr11 97831462 97831582 -24012274 + B2_Mm2 SINE B2 1 145 -50 9 1331 468 0 0 0 chr11 97831582 97831634 -24012222 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1331 748 135 164 12 chr11 97831634 97831678 -24012178 + B2_Mm2 SINE B2 146 190 -5 9 1331 538 182 54 9 chr11 97831724 97831835 -24012021 - PB1D7 SINE Alu 0 120 5 9 1331 312 27 0 0 chr11 97831919 97831956 -24011900 + (CAAG)n Simple_repeat Simple_repeat 4 40 0 9 1331 596 278 104 20 chr11 97831956 97832158 -24011698 + B4A SINE B4 2 220 -72 9 1331 1171 62 0 7 chr11 97833113 97833260 -24010596 - B1_Mus2 SINE Alu -1 146 1 9 1331 538 208 0 0 chr11 97833416 97833512 -24010344 - B1F SINE Alu -45 104 9 9 1331 1076 64 57 0 chr11 97833541 97833681 -24010175 - B1_Mus1 SINE Alu 0 148 1 9 1331 317 281 0 94 chr11 97833684 97833790 -24010066 - PB1 SINE Alu -2 125 30 9 1331 282 292 105 32 chr11 97833790 97833806 -24010050 - ID_B1 SINE B4 -1 221 91 9 1331 604 271 37 56 chr11 97833823 97834038 -24009818 + B3A SINE B2 1 211 -5 9 1331 1124 102 0 40 chr11 97834075 97834235 -24009621 + B2_Mm2 SINE B2 2 161 -34 9 1331 312 27 0 0 chr11 97834235 97834272 -24009584 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 9 1331 1124 102 0 40 chr11 97834272 97834285 -24009571 + B2_Mm2 SINE B2 162 168 -27 9 1331 318 67 0 0 chr11 97834399 97834444 -24009412 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1331 877 177 6 0 chr11 97834467 97834625 -24009231 - B3 SINE B2 -57 159 1 9 1331 1186 68 0 0 chr11 97834925 97835072 -24008784 + B1_Mus1 SINE Alu 2 148 0 9 1331 951 115 13 39 chr11 97835367 97835521 -24008335 + B1_Mur4 SINE Alu 1 150 0 9 1331 2143 110 75 11 chr11 97835851 97836210 -24007646 + RLTR14 LTR ERV1 1 382 0 9 1331 231 204 0 0 chr11 97836223 97836272 -24007584 + B1F SINE Alu 68 116 -33 9 1331 4692 109 10 108 chr11 97836334 97837335 -24006521 + RMER17A2 LTR ERVK 1 903 -3 9 1331 362 253 168 0 chr11 97837372 97837467 -24006389 - PB1D10 SINE Alu -2 115 5 9 1331 437 231 18 10 chr11 97837496 97837618 -24006238 - PB1D7 SINE Alu -12 137 11 9 1331 420 312 0 0 chr11 97837627 97837755 -24006101 + HAL1 LINE L1 1523 1650 -857 9 1331 1130 221 9 5 chr11 97837965 97838179 -24005677 - ID_B1 SINE B4 -9 215 1 9 1331 578 282 0 14 chr11 97838327 97838471 -24005385 + RSINE1 SINE B4 20 161 -4 9 1331 25 0 0 0 chr11 97838471 97838496 -24005360 + AT_rich Low_complexity Low_complexity 1 25 0 9 1331 711 214 0 28 chr11 97838651 97838795 -24005061 + B1_Mur3 SINE Alu 2 141 -8 9 1331 485 255 7 16 chr11 97840318 97840485 -24003371 - L1MB3 LINE L1 -206 5973 5809 9 1331 425 269 89 46 chr11 97840539 97840786 -24003070 - L1MB3 LINE L1 -636 5544 5292 9 1331 708 225 35 7 chr11 97840957 97841100 -24002756 - B1_Mur1 SINE Alu -1 148 2 9 1331 488 333 29 6 chr11 97841204 97841376 -24002480 + MER117 DNA MER1_type 3 178 -19 1 1331 220 118 0 4 chr11 97841752 97841795 -24002061 + MIRb SINE MIR 218 256 -6 1 1331 195 298 184 37 chr11 97842947 97843083 -24000773 - MIR SINE MIR -74 188 33 1 1331 397 266 15 45 chr11 97843099 97843115 -24000741 + ID SINE ID 70 81 -143 1 1331 665 195 16 0 chr11 97843115 97843238 -24000618 + B1_Mur3 SINE Alu 2 126 -23 1 1331 192 297 65 65 chr11 97844096 97844204 -23999652 + L2c LINE L2 3053 3160 -227 1 1331 744 226 23 64 chr11 97844645 97844863 -23998993 + ID_B1 SINE B4 7 215 -9 1 1331 195 42 0 0 chr11 97845014 97845038 -23998818 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 1331 430 215 70 84 chr11 97845078 97845220 -23998636 - ID_B1 SINE B4 -5 219 80 1 1331 278 234 23 117 chr11 97846471 97846619 -23997237 - MIR3 SINE MIR -36 172 46 1 1331 24 0 0 0 chr11 97848076 97848100 -23995756 + GC_rich Low_complexity Low_complexity 1 24 0 1 1331 297 284 89 27 chr11 97848815 97848927 -23994929 - PB1D7 SINE Alu 0 120 2 1 1331 217 300 144 0 chr11 97849342 97849432 -23994424 - MER5A DNA MER1_type -86 103 1 1 1331 632 28 0 0 chr11 97849559 97849631 -23994225 - tRNA-Cys-TGY tRNA tRNA -3 72 1 1 1331 641 27 0 0 chr11 97850235 97850308 -23993548 - tRNA-Cys-TGY tRNA tRNA -2 73 1 1 1331 423 0 0 0 chr11 97852146 97852193 -23991663 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1331 510 125 0 0 chr11 97852427 97852507 -23991349 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1331 445 235 76 25 chr11 97852587 97852705 -23991151 - ID_B1 SINE B4 -1 223 100 1 1331 250 312 37 12 chr11 97852745 97852826 -23991030 + L2a LINE L2 3313 3395 -31 1 1331 504 0 0 0 chr11 97852860 97852916 -23990940 + (TTC)n Simple_repeat Simple_repeat 3 58 0 1 1331 233 0 62 0 chr11 97852932 97852964 -23990892 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1331 942 85 0 0 chr11 97852964 97853093 -23990763 - B1_Mus1 SINE Alu -9 139 11 1 1331 1056 146 0 0 chr11 97853098 97853276 -23990580 + (TCC)n Simple_repeat Simple_repeat 2 179 0 1 1331 445 255 64 76 chr11 97853276 97853298 -23990558 - B4 SINE B4 -205 87 64 1 1331 1112 70 0 40 chr11 97853983 97854132 -23989724 - B1_Mus1 SINE Alu -1 147 5 1 1331 643 218 90 0 chr11 97854133 97854266 -23989590 - B1F SINE Alu 0 149 5 1 1331 956 40 0 8 chr11 97854492 97854618 -23989238 + B1_Mus1 SINE Alu 24 148 0 1 1331 425 289 0 10 chr11 97855004 97855102 -23988754 - PB1D10 SINE Alu 0 117 21 1 1331 704 89 0 18 chr11 97855144 97855258 -23988598 - B2_Mm2 SINE B2 -1 194 83 1 1331 1499 59 0 5 chr11 97855290 97855476 -23988380 + B2_Mm2 SINE B2 2 186 -9 1 1331 422 264 0 31 chr11 97857561 97857690 -23986166 + RMER30 DNA MER1_type 9 133 -69 1 1331 1025 91 21 7 chr11 97857716 97857860 -23985996 - B1_Mus2 SINE Alu 0 147 2 1 1331 261 0 0 0 chr11 97857872 97857901 -23985955 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1331 464 202 0 0 chr11 97857982 97858066 -23985790 - B3A SINE B2 -114 84 1 1 1331 619 262 15 50 chr11 97858163 97858364 -23985492 + B3A SINE B2 5 198 0 1 1331 717 110 0 0 chr11 97858384 97858484 -23985372 + B1_Mus2 SINE Alu 2 101 -46 1 1331 344 240 17 164 chr11 97858616 97858732 -23985124 - PB1 SINE Alu -1 119 21 1 1331 180 0 0 0 chr11 97859155 97859175 -23984681 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1331 652 43 11 2 chr11 97859182 97859296 -23984560 - B1_Mus2 SINE Alu 0 150 40 1 1331 384 243 237 53 chr11 97859938 97860090 -23983766 + B3A SINE B2 3 182 -16 1 1331 450 53 0 0 chr11 97860100 97860157 -23983699 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1331 599 65 361 0 chr11 97860305 97860413 -23983443 + B1_Mus1 SINE Alu 2 148 0 1 1331 650 117 0 19 chr11 97860415 97860520 -23983336 + B2_Mm2 SINE B2 66 168 -27 1 1331 193 325 26 26 chr11 97861305 97861422 -23982434 + L2b LINE L2 3049 3165 -210 1 1331 495 237 51 51 chr11 97862011 97862149 -23981707 + B1F1 SINE Alu 7 144 -5 1 1331 262 234 0 4 chr11 97862330 97862400 -23981456 + PB1D9 SINE Alu 1 69 -81 1 1331 276 30 0 0 chr11 97862553 97862586 -23981270 + (CACCC)n Simple_repeat Simple_repeat 4 36 0 1 1331 189 0 0 0 chr11 97862887 97862908 -23980948 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 1 1331 22 0 0 0 chr11 97865213 97865235 -23978621 + GC_rich Low_complexity Low_complexity 1 22 0 1 1331 556 281 29 0 chr11 97865881 97866020 -23977836 + B1F1 SINE Alu 1 143 -6 1 1331 216 0 0 0 chr11 97866021 97866045 -23977811 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1331 380 200 8 0 chr11 97867297 97867417 -23976439 + (CA)n Simple_repeat Simple_repeat 1 121 0 1 1331 233 267 10 131 chr11 97867512 97867611 -23976245 - PB1 SINE Alu -8 119 33 1 1331 275 336 43 7 chr11 97867642 97867780 -23976076 + L1MC4 LINE L1 7480 7622 -420 1 1331 887 154 257 12 chr11 97867786 97867957 -23975899 + B3 SINE B2 1 213 -3 1 1331 838 139 15 0 chr11 97868092 97868229 -23975627 - B1_Mur1 SINE Alu -2 147 9 1 1331 210 301 14 14 chr11 97868261 97868335 -23975521 - PB1D10 SINE Alu -11 106 33 1 1331 1423 70 27 0 chr11 97868359 97868546 -23975310 + B2_Mm2 SINE B2 1 192 -3 1 1331 321 208 156 74 chr11 97868647 97868782 -23975074 + MT2B LTR ERVL 133 278 -323 1 1331 602 186 61 23 chr11 97868674 97868806 -23975050 + B1_Mur4 SINE Alu 9 145 -5 1 1331 221 269 141 0 chr11 97868837 97868915 -23974941 + B1F1 SINE Alu 1 89 -60 1 1331 237 371 0 0 chr11 97868961 97869031 -23974825 + ID4 SINE ID 3 72 -11 1 1331 265 265 0 78 chr11 97869058 97869148 -23974708 + ID2 SINE ID 1 83 0 1 1331 604 238 88 73 chr11 97869076 97869166 -23974690 + B4 SINE B4 14 219 -72 1 1331 610 127 71 26 chr11 97869166 97869279 -23974577 + B1_Mus2 SINE Alu 5 122 -25 1 1331 194 0 39 0 chr11 97869280 97869306 -23974550 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 1 1331 338 273 52 0 chr11 97869343 97869420 -23974436 + ID_B1 SINE B4 136 216 -8 1 1331 262 286 10 20 chr11 97869534 97869634 -23974222 - MIR SINE MIR -128 134 36 1 1331 208 327 0 0 chr11 97869674 97869729 -23974127 - MIRc SINE MIR -30 238 184 1 1331 320 227 133 10 chr11 97869899 97869997 -23973859 + PB1D10 SINE Alu 1 110 -7 1 1331 412 267 102 15 chr11 97870018 97870155 -23973701 + B3A SINE B2 50 198 0 1 1331 209 372 0 0 chr11 97871979 97872073 -23971783 + G-rich Low_complexity Low_complexity 5 98 0 1 1331 180 0 0 0 chr11 97873368 97873388 -23970468 + (CCCA)n Simple_repeat Simple_repeat 4 23 0 1 1331 266 236 121 22 chr11 97873910 97874001 -23969855 - MIRb SINE MIR -82 186 87 1 1331 882 69 170 30 chr11 97874619 97874784 -23969072 + B2_Mm2 SINE B2 8 195 0 1 1331 641 281 6 42 chr11 97874808 97874975 -23968881 + RSINE1 SINE B4 1 161 -4 1 1331 180 0 0 0 chr11 97874990 97875010 -23968846 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1331 739 51 0 0 chr11 97875011 97875109 -23968747 - B1_Mus2 SINE Alu -48 99 2 1 1331 1349 29 0 11 chr11 97875145 97875320 -23968536 + B2_Mm2 SINE B2 1 173 -22 1 1331 423 291 37 37 chr11 97875327 97875491 -23968365 - RSINE1 SINE B4 0 165 2 1 1331 917 210 16 138 chr11 97875500 97875754 -23968102 - ID_B1 SINE B4 0 224 2 1 1331 488 252 21 56 chr11 97875896 97876039 -23967817 + B3A SINE B2 46 183 -15 1 1331 414 0 0 0 chr11 97876043 97876089 -23967767 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 1 1331 397 219 0 0 chr11 97876119 97876201 -23967655 - B2_Mm2 SINE B2 -19 176 95 1 1331 593 171 70 60 chr11 97876214 97876397 -23967459 - B2_Mm2 SINE B2 -1 215 28 1 1331 379 264 225 48 chr11 97876561 97876748 -23967108 + B4A SINE B4 67 286 -6 1 1331 378 0 0 0 chr11 97876754 97876796 -23967060 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1331 510 257 9 0 chr11 97876804 97876913 -23966943 + PB1D7 SINE Alu 1 110 -10 1 1331 407 246 118 0 chr11 97876926 97877036 -23966820 + RSINE1 SINE B4 3 125 -40 1 1331 1168 62 0 7 chr11 97877106 97877253 -23966603 - B1_Mm SINE Alu 0 147 2 1 1331 869 131 21 21 chr11 97877287 97877428 -23966428 + B1_Mus1 SINE Alu 5 145 -3 1 1331 235 358 0 0 chr11 97877433 97877500 -23966356 + ID4 SINE ID 1 67 -16 1 1331 214 373 61 18 chr11 97877500 97877516 -23966340 + ID SINE ID 1 89 -135 1 1331 225 94 0 0 chr11 97877516 97877548 -23966308 + (CGTG)n Simple_repeat Simple_repeat 4 35 0 1 1331 214 373 61 18 chr11 97877548 97877628 -23966228 + ID_B1 SINE B4 90 170 -54 1 1331 257 296 12 12 chr11 97877572 97877654 -23966202 + PB1D10 SINE Alu 34 115 -2 1 1331 461 198 12 0 chr11 97877711 97877792 -23966064 - ID4_ SINE ID 0 83 2 1 1331 232 123 92 0 chr11 97880071 97880136 -23963720 + Lx3_Mus LINE L1 6939 7009 0 1 1331 378 0 0 0 chr11 97880515 97880557 -23963299 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1331 420 20 0 0 chr11 97882086 97882135 -23961721 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1331 452 242 30 10 chr11 97882300 97882400 -23961456 + PB1D10 SINE Alu 1 102 -15 1 1331 423 0 0 0 chr11 97882400 97882447 -23961409 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1331 249 83 0 0 chr11 97883926 97883962 -23959894 + (CCG)n Simple_repeat Simple_repeat 2 37 0 1 1331 203 178 22 0 chr11 97883981 97884026 -23959830 + C-rich Low_complexity Low_complexity 3 48 0 1 1331 591 198 151 0 chr11 97884796 97884922 -23958934 + B1_Mus1 SINE Alu 3 147 -1 1 1331 427 230 22 9 chr11 97885016 97885122 -23958734 + B1F SINE Alu 1 141 -8 1 1331 1241 99 43 22 chr11 97885136 97885321 -23958535 + B2_Mm2 SINE B2 1 189 -6 1 1331 1208 48 7 0 chr11 97885478 97885623 -23958233 + B1_Mm SINE Alu 1 146 -1 1 1331 739 77 151 71 chr11 97885639 97885765 -23958091 + B1_Mus1 SINE Alu 1 136 -12 1 1331 642 49 0 0 chr11 97885765 97885847 -23958009 + (GAA)n Simple_repeat Simple_repeat 1 82 0 1 1331 405 254 70 9 chr11 97886111 97886226 -23957630 + B1_Mur1 SINE Alu 21 142 -7 1 1331 398 208 91 82 chr11 97886316 97886426 -23957430 - PB1D9 SINE Alu -1 119 9 1 1331 212 182 23 0 chr11 97886437 97886481 -23957375 + (TTTG)n Simple_repeat Simple_repeat 3 47 0 1 1331 1140 75 0 20 chr11 97886482 97886632 -23957224 - B1_Mus1 SINE Alu 0 148 2 1 1331 394 224 26 78 chr11 97886756 97886872 -23956984 + PB1D10 SINE Alu 1 110 -7 1 1331 423 179 33 0 chr11 97886914 97887011 -23956845 - B1_Mur1 SINE Alu -42 107 1 1 1331 288 305 18 71 chr11 97887011 97887027 -23956829 - MT2B LTR ERVL -340 261 155 1 1331 267 282 118 108 chr11 97887038 97887233 -23956623 - B3A SINE B2 -1 197 1 1 1331 419 209 75 9 chr11 97887250 97887356 -23956500 - ID_B1 SINE B4 -3 221 109 1 1331 1181 48 14 14 chr11 97890044 97890192 -23953664 - B1_Mus1 SINE Alu 0 148 1 1 1331 1298 87 16 42 chr11 97891219 97891411 -23952445 + B2_Mm2 SINE B2 1 187 -8 1 1331 868 66 0 8 chr11 97892033 97892155 -23951701 - B1_Mus1 SINE Alu -27 121 1 1 1331 829 113 131 20 chr11 97892158 97892311 -23951545 - B2_Mm2 SINE B2 -23 172 3 1 1331 630 53 42 0 chr11 97893075 97893170 -23950686 - B2_Mm1a SINE B2 0 193 95 1 1331 495 216 105 65 chr11 97893219 97893343 -23950513 - B3 SINE B2 -86 130 2 1 1331 292 246 60 12 chr11 97893343 97893451 -23950405 + MTD LTR MaLR 1 120 -259 1 1331 279 337 220 22 chr11 97893451 97893656 -23950200 + MT2A LTR ERVL 1 375 -158 1 1331 680 195 97 51 chr11 97893639 97893834 -23950022 + MTD LTR MaLR 214 417 -2 1 1331 442 209 29 0 chr11 97894048 97894073 -23949783 + B4 SINE B4 60 85 -207 1 1331 1209 92 91 11 chr11 97894073 97894249 -23949607 + B2_Mm2 SINE B2 2 191 -4 1 1331 442 209 29 0 chr11 97894249 97894328 -23949528 + B4 SINE B4 86 166 -126 1 1331 360 171 34 79 chr11 97894250 97894339 -23949517 + MT2B2 LTR ERVL 167 251 -333 1 1331 248 180 0 74 chr11 97894335 97894389 -23949467 - MTD LTR MaLR -156 263 214 1 1331 499 56 0 0 chr11 97894432 97894503 -23949353 + B1_Mm SINE Alu 77 147 0 1 1331 221 163 0 20 chr11 97894510 97894560 -23949296 + GA-rich Low_complexity Low_complexity 2 50 0 1 1331 549 231 82 71 chr11 97894724 97894920 -23948936 + B3A SINE B2 1 198 0 1 1331 875 78 139 0 chr11 97894920 97895048 -23948808 + B1_Mus2 SINE Alu 1 147 0 1 1331 29 47 0 0 chr11 97895050 97895093 -23948763 + AT_rich Low_complexity Low_complexity 1 43 0 1 1331 790 196 21 14 chr11 97895301 97895446 -23948410 - B1_Mus2 SINE Alu -1 146 1 1 1331 1584 37 32 0 chr11 97895814 97896001 -23947855 + B2_Mm1a SINE B2 1 193 0 1 1331 207 354 12 12 chr11 97896583 97896693 -23947163 + MIRm SINE MIR 70 182 -26 1 1331 235 253 48 0 chr11 97896678 97896753 -23947103 + MIRc SINE MIR 83 165 -43 1 1331 312 253 61 40 chr11 97896854 97896953 -23946903 + PB1 SINE Alu 1 101 -26 1 1331 257 274 3 0 chr11 97896974 97897041 -23946815 + B1F SINE Alu 4 71 -46 1 1331 608 178 37 44 chr11 97899707 97899842 -23944014 + B1_Mur1 SINE Alu 14 147 -2 1 1331 458 215 0 61 chr11 97899840 97899954 -23943902 + B1F2 SINE Alu 43 149 0 1 1331 651 166 39 90 chr11 97899959 97900145 -23943711 + B3 SINE B2 2 193 -2 1 1331 407 103 64 0 chr11 97900261 97900339 -23943517 - B1_Mus2 SINE Alu 0 147 65 1 1331 1244 61 0 0 chr11 97900383 97900531 -23943325 - B1_Mus1 SINE Alu 0 148 1 1 1331 676 140 0 26 chr11 97900546 97900663 -23943193 - B1_Mur4 SINE Alu 0 150 37 1 1331 277 200 187 0 chr11 97900702 97900777 -23943079 - ID_B1 SINE B4 -84 140 52 1 1331 1278 34 0 0 chr11 97902064 97902210 -23941646 + B1_Mm SINE Alu 2 147 0 1 1331 306 300 0 18 chr11 97902952 97903043 -23940813 - RSINE1 SINE B4 -204 88 2 1 1331 1124 77 148 6 chr11 97903164 97903333 -23940523 - B2_Mm2 SINE B2 -2 193 1 1 1331 239 267 0 62 chr11 97903334 97903414 -23940442 - PB1D10 SINE Alu -42 75 1 1 1331 183 295 0 62 chr11 97903440 97903505 -23940351 + L2b LINE L2 3314 3374 -1 1 1331 996 73 65 7 chr11 97903646 97903784 -23940072 - B1_Mm SINE Alu 0 147 2 1 1331 504 196 0 0 chr11 97904279 97904376 -23939480 + B1_Mus2 SINE Alu 51 147 0 1 1331 225 0 0 0 chr11 97904376 97904401 -23939455 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1331 325 238 96 24 chr11 97905494 97905619 -23938237 + ID_B1 SINE B4 86 219 -5 1 1331 479 207 24 72 chr11 97905631 97905756 -23938100 + PB1D9 SINE Alu 2 120 0 1 1331 217 200 0 0 chr11 97905761 97905796 -23938060 + polypyrimidine Low_complexity Low_complexity 1 35 0 1 1331 1066 82 0 13 chr11 97905815 97905964 -23937892 + B1_Mus2 SINE Alu 1 147 0 1 1331 243 0 0 0 chr11 97905969 97905996 -23937860 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1331 755 285 54 15 chr11 97905996 97906199 -23937657 - ID_B1 SINE B4 -13 211 1 1 1331 979 212 29 48 chr11 97906405 97906613 -23937243 + ID_B1 SINE B4 10 213 -11 1 1331 278 359 108 13 chr11 97906473 97906631 -23937225 + FAM SINE Alu 138 310 -1 1 1331 1252 54 0 0 chr11 97906663 97906811 -23937045 + B1_Mus1 SINE Alu 1 148 0 1 1331 210 291 33 65 chr11 97906859 97906951 -23936905 + PB1D10 SINE Alu 29 117 0 1 1331 746 229 84 0 chr11 97906995 97907174 -23936682 + B3 SINE B2 2 195 -21 1 1331 416 216 22 33 chr11 97907213 97907304 -23936552 + ID_B1 SINE B4 122 211 -13 1 1331 1198 77 53 27 chr11 97907301 97907319 -23936537 - B2_Mm2 SINE B2 -1 194 180 1 1331 733 208 206 11 chr11 97907319 97907499 -23936357 - B3 SINE B2 0 216 2 1 1331 225 0 0 0 chr11 97907499 97907524 -23936332 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1331 1198 77 53 27 chr11 97907524 97907692 -23936164 - B2_Mm2 SINE B2 -16 179 3 1 1331 652 172 0 17 chr11 97907694 97907812 -23936044 - PB1D9 SINE Alu 0 120 5 1 1331 764 250 15 25 chr11 97908062 97908259 -23935597 + B3A SINE B2 3 197 -1 1 1331 303 127 0 0 chr11 97908430 97908493 -23935363 + (T)n Simple_repeat Simple_repeat 1 63 0 1 1331 1294 27 0 0 chr11 97908493 97908639 -23935217 - B1_Mus1 SINE Alu 0 148 3 1 1331 207 361 2 53 chr11 97909669 97909799 -23934057 + MIR3 SINE MIR 73 201 -75 1 1331 314 301 88 103 chr11 97910130 97910460 -23933396 - L3 LINE CR1 -5 4484 4160 1 1332 405 0 0 0 chr11 97910868 97910913 -23932943 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1332 615 236 6 77 chr11 97910920 97911051 -23932805 - RSINE1 SINE B4 -19 146 25 1 1332 1690 162 109 12 chr11 97911051 97911126 -23932730 + ORR1B2 LTR MaLR 5 99 -268 1 1332 327 49 0 0 chr11 97911126 97911167 -23932689 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1332 1690 162 109 12 chr11 97911167 97911422 -23932434 + ORR1B2 LTR MaLR 100 366 -1 1 1332 615 236 6 77 chr11 97911422 97911446 -23932410 - RSINE1 SINE B4 -141 24 2 1 1332 23 0 0 0 chr11 97912297 97912320 -23931536 + GC_rich Low_complexity Low_complexity 1 23 0 1 1332 480 264 48 41 chr11 97912714 97912860 -23930996 + B1F SINE Alu 3 149 0 1 1332 482 268 82 6 chr11 97915282 97915440 -23928416 - B4 SINE B4 -11 281 112 1 1332 1181 68 0 0 chr11 97915513 97915659 -23928197 + B1_Mus1 SINE Alu 2 147 -1 1 1332 660 213 22 0 chr11 97915706 97915842 -23928014 - B1F SINE Alu 0 149 11 1 1332 239 309 14 81 chr11 97915709 97915857 -23927999 + YREP_Mm Unknown Unknown 182 319 -1493 1 1332 652 234 20 14 chr11 97915865 97916012 -23927844 + B1_Mur1 SINE Alu 1 148 -1 1 1332 1192 41 7 33 chr11 97916013 97916165 -23927691 + B1_Mus1 SINE Alu 1 148 0 1 1332 206 224 0 0 chr11 97916169 97916227 -23927629 + A-rich Low_complexity Low_complexity 1 58 0 1 1332 1100 140 207 0 chr11 97916470 97916649 -23927207 - B3 SINE B2 0 216 1 1 1332 253 316 0 78 chr11 97917292 97917395 -23926461 + PB1 SINE Alu 17 111 -16 1 1332 226 268 18 0 chr11 97917625 97917681 -23926175 - PB1D9 SINE Alu -54 66 10 1 1332 180 0 0 0 chr11 97917687 97917707 -23926149 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1332 1237 20 0 52 chr11 97917707 97917862 -23925994 - B1_Mus2 SINE Alu 0 147 1 1 1332 1125 155 42 42 chr11 97917884 97918099 -23925757 - B3 SINE B2 0 216 2 1 1332 35 0 0 0 chr11 97918099 97918134 -23925722 + AT_rich Low_complexity Low_complexity 1 35 0 1 1332 807 142 79 0 chr11 97918134 97918261 -23925595 + B1_Mus1 SINE Alu 2 138 -10 1 1332 229 235 0 19 chr11 97919352 97919404 -23924452 + PB1D9 SINE Alu 40 90 -30 1 1332 1040 237 285 3 chr11 97919406 97919721 -23924135 + MTD LTR MaLR 3 406 -15 1 1332 380 347 20 33 chr11 97919773 97919925 -23923931 - RSINE1 SINE B4 -4 161 12 1 1332 1186 75 0 0 chr11 97920012 97920159 -23923697 - B1_Mus2 SINE Alu 0 147 1 1 1332 959 103 14 20 chr11 97920397 97920545 -23923311 + B1_Mur4 SINE Alu 1 147 -3 1 1332 207 100 0 0 chr11 97920608 97920638 -23923218 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 1 1332 234 0 0 0 chr11 97922044 97922070 -23921786 + (GCTG)n Simple_repeat Simple_repeat 3 28 0 1 1332 330 211 6 54 chr11 97922410 97922499 -23921357 - B1F SINE Alu -8 112 25 1 1332 258 211 0 17 chr11 97922586 97922644 -23921212 + 4.5SRNA scRNA scRNA 30 86 -8 1 1332 567 163 0 0 chr11 97922599 97922691 -23921165 + B1_Mus2 SINE Alu 45 136 -11 1 1332 294 249 6 9 chr11 97922715 97922782 -23921074 + B1_Mur1 SINE Alu 43 137 -12 1 1332 449 213 28 9 chr11 97922965 97923074 -23920782 + B1_Mur4 SINE Alu 35 145 -5 1 1332 223 287 129 0 chr11 97923725 97923826 -23920030 + MIR3 SINE MIR 1 114 -94 1 1332 266 191 147 0 chr11 97923925 97923993 -23919863 - PB1D10 SINE Alu -4 113 36 1 1332 396 0 0 0 chr11 97923994 97924038 -23919818 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1332 1335 93 44 0 chr11 97924080 97924262 -23919594 - B2_Mm2 SINE B2 -5 190 1 1 1332 1000 54 78 0 chr11 97924284 97924413 -23919443 - B1_Mus1 SINE Alu -8 140 2 1 1332 441 290 67 33 chr11 97924432 97924582 -23919274 - RSINE1 SINE B4 0 165 11 1 1332 914 43 0 0 chr11 97924630 97924747 -23919109 + B1_Mm SINE Alu 21 137 -10 1 1332 432 0 0 0 chr11 97924747 97924795 -23919061 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1332 348 289 7 99 chr11 97924795 97924929 -23918927 - B1F SINE Alu -27 122 1 1 1332 261 0 0 0 chr11 97924945 97924974 -23918882 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1332 547 244 47 8 chr11 97924978 97925106 -23918750 - B1F2 SINE Alu -16 133 1 1 1332 193 221 156 0 chr11 97925422 97925499 -23918357 - MIRc SINE MIR -64 204 116 1 1332 691 35 0 0 chr11 97925815 97925901 -23917955 - B2_Mm2 SINE B2 -109 86 1 1 1332 200 59 29 0 chr11 97926098 97926132 -23917724 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1332 229 82 31 62 chr11 97927163 97927228 -23916628 + GA-rich Low_complexity Low_complexity 2 64 0 1 1332 235 173 160 0 chr11 97927276 97927351 -23916505 + L1_Mur1 LINE L1 612 698 -6284 1 1332 199 330 59 20 chr11 97927598 97927700 -23916156 - L2a LINE L2 -22 3404 3299 1 1332 700 257 31 46 chr11 97928474 97928670 -23915186 + B3A SINE B2 2 194 -4 1 1332 2034 110 33 16 chr11 97928690 97928994 -23914862 + RLTR27 LTR ERVK 1 309 0 1 1332 386 30 38 0 chr11 97929019 97929072 -23914784 + MMERVK10C-int LTR ERVK 163 267 -7314 1 1332 568 254 62 42 chr11 97929103 97929296 -23914560 + MMERVK10C-int LTR ERVK 656 852 -1135 1 1332 238 213 0 62 chr11 97929297 97929362 -23914494 + GA-rich Low_complexity Low_complexity 5 65 0 1 1332 3009 341 19 37 chr11 97929598 97931454 -23912402 + MMERVK10C-int LTR ERVK 1095 2917 -4664 1 1332 3526 321 32 29 chr11 97931491 97933310 -23910546 + MMERVK10C-int LTR ERVK 3653 5477 -2104 1 1332 417 306 18 24 chr11 97933529 97933693 -23910163 + MMERVK10C-int LTR ERVK 6907 7069 -512 1 1332 1535 142 4 30 chr11 97933814 97934082 -23909774 + MMERVK10C-int LTR ERVK 7321 7581 0 1 1332 1990 115 47 20 chr11 97934082 97934383 -23909473 + RLTR27 LTR ERVK 1 309 0 1 1332 1458 21 24 101 chr11 97934387 97934427 -23909429 + B2_Mm2 SINE B2 1 40 -155 1 1332 1174 68 0 7 chr11 97934427 97934575 -23909281 + B1_Mus1 SINE Alu 2 148 0 1 1332 1458 21 24 101 chr11 97934575 97934741 -23909115 + B2_Mm2 SINE B2 41 191 -4 1 1332 773 125 0 8 chr11 97934795 97934916 -23908940 + B1_Mus1 SINE Alu 16 135 -13 1 1332 506 302 83 35 chr11 97934901 97935131 -23908725 + B4A SINE B4 7 247 -45 1 1332 366 271 54 43 chr11 97935141 97935281 -23908575 - B1F1 SINE Alu -5 144 7 1 1332 1017 137 0 7 chr11 97935379 97935526 -23908330 + B1_Mus2 SINE Alu 2 147 0 1 1332 274 301 0 46 chr11 97935542 97935629 -23908227 + B4A SINE B4 210 292 0 1 1332 351 333 18 9 chr11 97935667 97935776 -23908080 + PB1D7 SINE Alu 3 112 -8 1 1332 384 226 204 0 chr11 97935799 97935892 -23907964 + PB1D7 SINE Alu 2 113 -7 1 1332 941 229 28 5 chr11 97935903 97936114 -23907742 + B3 SINE B2 1 216 0 1 1332 339 182 101 92 chr11 97936128 97936237 -23907619 + MT2B LTR ERVL 155 264 -337 1 1332 850 77 69 0 chr11 97936141 97936271 -23907585 + B1_Mm SINE Alu 9 147 0 1 1332 527 178 40 0 chr11 97937615 97937716 -23906140 - ID_B1 SINE B4 -15 209 105 1 1332 669 186 161 40 chr11 97937736 97937910 -23905946 + B2_Mm2 SINE B2 1 195 0 1 1332 876 171 14 14 chr11 97938948 97939096 -23904760 + B1_Mur2 SINE Alu 1 148 -1 1 1332 506 235 108 24 chr11 97939129 97939295 -23904561 - B3 SINE B2 -35 181 2 1 1332 1132 96 0 0 chr11 97939390 97939536 -23904320 - B1_Mus1 SINE Alu -1 147 2 1 1332 1195 48 7 0 chr11 97939563 97939709 -23904147 - B1_Mus1 SINE Alu 0 148 2 1 1332 1251 98 60 0 chr11 97939733 97939917 -23903939 + B2_Mm2 SINE B2 1 195 0 1 1332 486 0 0 0 chr11 97940064 97940118 -23903738 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1332 587 206 77 51 chr11 97940125 97940301 -23903555 + B3 SINE B2 1 171 -24 1 1332 1505 190 152 17 chr11 97940315 97940831 -23903025 + RMER4A LTR ERVK 26 585 0 1 1332 2508 106 20 5 chr11 97941038 97941436 -23902420 + LTRIS4 LTR ERV1 104 507 0 1 1332 217 186 220 0 chr11 97941503 97941562 -23902294 - ID4_ SINE ID 0 83 12 1 1332 406 265 168 7 chr11 97941567 97941704 -23902152 - RSINE1 SINE B4 -3 162 4 1 1332 327 303 10 10 chr11 97942022 97942122 -23901734 + PB1D10 SINE Alu 11 110 -7 1 1332 392 244 0 34 chr11 97942286 97942375 -23901481 - ID_B1 SINE B4 -2 222 137 1 1332 667 264 57 78 chr11 97942365 97942558 -23901298 - B3A SINE B2 -3 192 4 1 1332 932 153 82 0 chr11 97942576 97942746 -23901110 - B2_Mm1t SINE B2 -9 184 1 1 1332 302 253 185 11 chr11 97942762 97942854 -23901002 - PB1D10 SINE Alu -6 111 4 1 1332 387 233 77 10 chr11 97943332 97943436 -23900420 + B2_Mm2 SINE B2 1 111 -84 1 1332 785 201 6 24 chr11 97943426 97943594 -23900262 - B3 SINE B2 -51 165 1 1 1332 24 0 0 0 chr11 97943947 97943971 -23899885 + AT_rich Low_complexity Low_complexity 1 24 0 1 1332 24 0 0 0 chr11 97945740 97945764 -23898092 + AT_rich Low_complexity Low_complexity 1 24 0 1 1332 215 250 0 35 chr11 97946237 97946295 -23897561 - RSINE1 SINE B4 -107 58 3 1 1332 236 348 11 0 chr11 97947369 97947461 -23896395 - B1F SINE Alu -51 98 6 1 1332 240 239 137 27 chr11 97948408 97948481 -23895375 + PB1D10 SINE Alu 24 104 -13 1 1332 239 230 133 33 chr11 97948553 97948643 -23895213 + PB1 SINE Alu 27 125 -2 1 1332 258 116 0 0 chr11 97950158 97950201 -23893655 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1332 23 33 0 0 chr11 97952387 97952417 -23891439 + AT_rich Low_complexity Low_complexity 1 30 0 1 1332 299 254 32 88 chr11 97952451 97952576 -23891280 + MT2B LTR ERVL 139 256 -345 1 1332 506 212 80 36 chr11 97952487 97952624 -23891232 + B1_Mur2 SINE Alu 6 148 -1 1 1332 566 163 0 0 chr11 97952950 97953042 -23890814 - B1F1 SINE Alu -52 97 6 1 1332 505 263 0 114 chr11 97953073 97953249 -23890607 + RSINE1 SINE B4 2 157 -8 1 1332 369 248 159 55 chr11 97953257 97953402 -23890454 + B3 SINE B2 57 216 0 1 1332 22 0 0 0 chr11 97953685 97953707 -23890149 + AT_rich Low_complexity Low_complexity 1 22 0 1 1332 788 132 69 8 chr11 97953728 97953858 -23889998 - B1_Mur4 SINE Alu -12 138 1 1 1332 538 125 115 0 chr11 97953905 97954001 -23889855 + B3 SINE B2 14 120 -96 1 1332 1413 51 6 11 chr11 97954542 97954721 -23889135 + B2_Mm2 SINE B2 3 180 -15 1 1332 1511 58 5 0 chr11 97954721 97954912 -23888944 + B2_Mm1t SINE B2 2 193 0 1 1332 341 255 57 38 chr11 97954998 97955104 -23888752 - PB1D10 SINE Alu -7 110 3 1 1332 964 71 0 0 chr11 97955263 97955390 -23888466 + B2_Mm2 SINE B2 1 127 -68 1 1332 225 0 0 0 chr11 97955390 97955415 -23888441 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1332 1235 35 0 0 chr11 97955418 97955561 -23888295 - B1_Mus1 SINE Alu -5 143 1 1 1332 518 120 0 0 chr11 97955577 97955652 -23888204 + B2_Mm1t SINE B2 48 122 -71 1 1332 189 121 0 0 chr11 97955677 97955710 -23888146 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1332 605 154 18 0 chr11 97955857 97955967 -23887889 + B1_Mus1 SINE Alu 37 148 0 1 1332 234 125 0 0 chr11 97956350 97956398 -23887458 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1332 205 316 7 97 chr11 97957415 97957569 -23886287 + MIR SINE MIR 21 160 -102 1 1332 520 218 81 9 chr11 97957779 97957890 -23885966 + B1_Mur2 SINE Alu 21 139 -10 1 1332 333 0 0 0 chr11 97957890 97957927 -23885929 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1 1332 182 37 37 0 chr11 97958614 97958641 -23885215 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1332 549 196 19 0 chr11 97958642 97958749 -23885107 - PB1D9 SINE Alu -11 109 1 1 1332 227 307 23 0 chr11 97958994 97959082 -23884774 + ID_B1 SINE B4 82 171 -53 1 1332 333 0 0 0 chr11 97959100 97959137 -23884719 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1332 359 244 86 25 chr11 97959142 97959247 -23884609 - PB1D7 SINE Alu -28 121 8 1 1332 269 279 94 133 chr11 97959239 97959367 -23884489 - B1F1 SINE Alu -23 126 4 1 1332 1148 68 0 26 chr11 97959380 97959531 -23884325 - B1_Mus2 SINE Alu 0 147 1 1 1332 287 189 226 0 chr11 97960038 97960144 -23883712 - B1F2 SINE Alu -17 132 3 1 1332 183 42 0 0 chr11 97960595 97960619 -23883237 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1332 1229 22 0 0 chr11 97960619 97960758 -23883098 - B1_Mus2 SINE Alu -8 139 1 1 1332 407 298 8 38 chr11 97960779 97960897 -23882959 - PB1D7 SINE Alu -2 125 4 1 1332 1172 135 11 5 chr11 97962481 97962667 -23881189 + B2_Mm2 SINE B2 1 187 -8 1 1332 712 173 98 0 chr11 97962677 97962850 -23881006 + B2_Mm2 SINE B2 2 191 -4 1 1332 807 95 0 0 chr11 97963596 97963712 -23880144 + B2_Mm2 SINE B2 1 116 -79 1 1332 24 0 0 0 chr11 97963714 97963738 -23880118 + AT_rich Low_complexity Low_complexity 1 24 0 1 1332 366 62 410 0 chr11 97963792 97963887 -23879969 + B2_Mm2 SINE B2 47 180 -15 1 1332 875 190 66 119 chr11 97964296 97964355 -23879501 + B3 SINE B2 1 47 -169 1 1332 1238 41 0 0 chr11 97964355 97964501 -23879355 - B1_Mus2 SINE Alu 0 147 2 1 1332 875 190 66 119 chr11 97964501 97964668 -23879188 + B3 SINE B2 48 215 -1 1 1332 699 154 23 0 chr11 97964734 97964864 -23878992 - B1_Mur4 SINE Alu 0 150 18 1 1332 213 39 0 0 chr11 97964983 97965009 -23878847 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1 1332 379 206 104 42 chr11 97965222 97965318 -23878538 - PB1D7 SINE Alu 0 120 19 1 1332 501 280 56 46 chr11 97965413 97965608 -23878248 - B4 SINE B4 -11 281 85 1 1332 236 250 66 0 chr11 97965614 97965690 -23878166 - L1M4 LINE L1 -1771 4375 4295 1 1332 659 178 23 15 chr11 97965710 97965841 -23878015 - B1_Mur2 SINE Alu 0 149 18 1 1332 231 125 0 0 chr11 97965849 97965889 -23877967 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1 1332 343 321 37 0 chr11 97965898 97966007 -23877849 - RSINE1 SINE B4 -4 161 49 1 1332 387 41 0 0 chr11 97966083 97966132 -23877724 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1332 389 227 54 9 chr11 97966132 97966233 -23877623 - PB1D9 SINE Alu -9 111 5 1 1332 279 253 0 107 chr11 97966254 97966338 -23877518 - B1F2 SINE Alu -56 93 19 1 1332 274 234 62 0 chr11 97966730 97966794 -23877062 - L1M4 LINE L1 -2053 4093 4026 1 1332 312 237 0 70 chr11 97966795 97966895 -23876961 + PB1D10 SINE Alu 1 93 -24 1 1332 348 238 78 10 chr11 97967014 97967116 -23876740 - B1F SINE Alu 0 149 41 1 1332 229 190 259 12 chr11 97967203 97967288 -23876568 - B1F1 SINE Alu -26 123 18 1 1332 308 286 143 0 chr11 97967335 97967426 -23876430 - B1_Mus2 SINE Alu -43 104 1 1 1332 248 293 52 26 chr11 97967359 97967436 -23876420 - B4 SINE B4 -136 156 78 1 1332 298 270 22 11 chr11 97967511 97967601 -23876255 - B1F SINE Alu -44 105 15 1 1332 242 275 174 38 chr11 97967609 97967874 -23875982 - L1M4 LINE L1 -3198 2948 2648 1 1332 435 225 25 59 chr11 97967922 97968040 -23875816 - B1_Mur1 SINE Alu -17 132 19 1 1332 285 267 0 137 chr11 97967946 97968063 -23875793 - MT2B LTR ERVL -340 261 161 1 1332 294 179 0 0 chr11 97968069 97968125 -23875731 + T-rich Low_complexity Low_complexity 1 56 0 1 1332 1197 48 0 0 chr11 97968557 97968703 -23875153 - B1_Mm SINE Alu 0 147 2 1 1332 486 259 159 0 chr11 97968836 97969006 -23874850 - B3A SINE B2 0 198 2 1 1332 506 113 122 108 chr11 97969271 97969410 -23874446 + B1_Mus1 SINE Alu 8 148 0 1 1332 254 275 58 0 chr11 97969425 97969494 -23874362 + ID4 SINE ID 1 73 -10 1 1332 464 245 9 0 chr11 97969863 97969969 -23873887 - ID_B1 SINE B4 -3 221 115 1 1332 456 268 46 66 chr11 97969969 97970010 -23873846 - B1F SINE Alu 0 144 1 1 1332 212 186 254 0 chr11 97970615 97970674 -23873182 + ID4_ SINE ID 5 78 -5 1 1332 21 0 0 0 chr11 97970977 97970998 -23872858 + AT_rich Low_complexity Low_complexity 1 21 0 1 1332 332 359 66 13 chr11 97971243 97971469 -23872387 + MER21B LTR ERV1 497 734 -129 1 1332 765 168 27 40 chr11 97971597 97971746 -23872110 - B1_Mur3 SINE Alu -2 147 1 1 1332 258 306 51 0 chr11 97971774 97971872 -23871984 - PB1D9 SINE Alu 0 120 18 1 1332 791 243 11 33 chr11 97972876 97973059 -23870797 - B3 SINE B2 -36 180 2 1 1332 250 227 53 0 chr11 97973067 97973142 -23870714 - ID_B1 SINE B4 -2 222 144 1 1332 799 230 50 44 chr11 97973155 97973429 -23870427 - B4A SINE B4 -15 277 2 1 1332 1111 89 6 0 chr11 97973741 97973899 -23869957 + B2_Mm1a SINE B2 2 160 -33 1 1332 252 0 0 0 chr11 97973899 97973927 -23869929 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1332 307 247 183 0 chr11 97974147 97974240 -23869616 - PB1D9 SINE Alu -10 110 1 1 1332 265 246 58 0 chr11 97974863 97974932 -23868924 - BC1_Mm scRNA scRNA -56 96 24 1 1332 297 205 108 94 chr11 97975385 97975496 -23868360 - PB1D9 SINE Alu -7 113 5 1 1332 363 241 40 33 chr11 97976794 97976931 -23866925 - PB1D10 SINE Alu -1 148 12 1 1332 1432 80 11 0 chr11 97976941 97977128 -23866728 - B2_Mm1t SINE B2 -3 190 2 1 1332 347 237 165 15 chr11 97977480 97977613 -23866243 - L1MB3 LINE L1 -65 6118 5966 1 1332 235 241 37 0 chr11 97977881 97977935 -23865921 - L1MB3 LINE L1 -502 5687 5632 1 1332 225 154 0 0 chr11 97978030 97978069 -23865787 + CT-rich Low_complexity Low_complexity 1 39 0 1 1332 721 143 0 1 chr11 97978110 97978234 -23865622 - B1_Mur3 SINE Alu -26 123 1 1 1332 1226 136 16 16 chr11 97978286 97978480 -23865376 + B2_Mm2 SINE B2 1 194 -1 1 1332 410 188 0 119 chr11 97978482 97978591 -23865265 - PB1D7 SINE Alu -19 129 33 1 1332 339 301 164 62 chr11 97978614 97978689 -23865167 - L1MB3 LINE L1 -748 5398 5327 1 1332 1308 92 11 16 chr11 97978689 97978877 -23864979 + B2_Mm2 SINE B2 1 187 -8 1 1332 339 301 164 62 chr11 97978877 97979155 -23864701 - L1MB3 LINE L1 -820 5326 5009 1 1332 240 122 0 0 chr11 97979656 97979697 -23864159 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 1 1332 393 185 25 0 chr11 97979847 97979928 -23863928 + B3 SINE B2 2 84 -132 1 1332 295 234 13 25 chr11 97980309 97980388 -23863468 - PB1D7 SINE Alu -30 90 13 1 1332 337 277 11 5 chr11 97980402 97980510 -23863346 - B1_Mur2 SINE Alu -1 119 14 1 1332 1134 68 0 13 chr11 97980554 97980703 -23863153 - B1_Mus2 SINE Alu 0 147 1 1 1332 588 116 36 0 chr11 97980785 97980897 -23862959 + (CATATA)n Simple_repeat Simple_repeat 3 118 0 1 1332 598 316 23 0 chr11 97980897 97981074 -23862782 - B3 SINE B2 -34 182 2 1 1332 246 233 80 23 chr11 97981111 97981199 -23862657 - B1_Mur3 SINE Alu -10 139 47 1 1332 282 331 112 22 chr11 97981501 97981680 -23862176 - ORR1E LTR MaLR -164 195 1 1 1332 893 150 161 0 chr11 97981750 97981930 -23861926 + B3 SINE B2 2 210 -6 1 1332 316 49 0 0 chr11 97981959 97982000 -23861856 + RMER6A LTR ERVK 1 41 -420 1 1332 410 219 0 116 chr11 97981975 97982001 -23861855 - MT2B LTR ERVL -331 270 189 1 1332 645 84 0 0 chr11 97982001 97982096 -23861760 - B1_Mus2 SINE Alu -52 95 1 1 1332 3882 138 23 4 chr11 97982096 97982768 -23861088 + RMER6A LTR ERVK 30 714 -42 1 1332 1120 62 0 7 chr11 97982774 97982920 -23860936 - B1_Mus2 SINE Alu 0 147 3 1 1332 484 240 47 0 chr11 97982989 97983118 -23860738 + B3 SINE B2 76 210 -6 1 1332 614 183 91 8 chr11 97983400 97983532 -23860324 + B1_Mm SINE Alu 5 147 0 1 1332 511 271 23 0 chr11 97983654 97983787 -23860069 + B3 SINE B2 78 213 -3 1 1332 596 182 48 55 chr11 97983825 97983970 -23859886 - B1_Mur3 SINE Alu 0 149 6 1 1332 1567 48 5 0 chr11 97984076 97984265 -23859591 + B2_Mm1t SINE B2 2 191 -2 1 1332 1273 27 0 0 chr11 97984267 97984414 -23859442 + B1_Mm SINE Alu 1 147 0 1 1332 29 0 0 0 chr11 97984414 97984443 -23859413 + AT_rich Low_complexity Low_complexity 1 29 0 1 1332 296 271 116 8 chr11 97984533 97984651 -23859205 + PB1D7 SINE Alu 1 123 -24 1 1332 981 132 0 0 chr11 97984760 97984904 -23858952 - B1_Mur4 SINE Alu -4 146 3 1 1332 371 266 18 27 chr11 97984951 97985063 -23858793 + MLT1A1 LTR MaLR 288 398 -10 1 1332 1373 79 17 0 chr11 97985555 97985732 -23858124 + B2_Mm2 SINE B2 2 181 -14 1 1332 1015 78 42 0 chr11 97985755 97985897 -23857959 - B1_Mus1 SINE Alu 0 148 1 1 1332 530 175 36 80 chr11 97986302 97986414 -23857442 + PB1D9 SINE Alu 5 111 -9 1 1332 249 57 0 0 chr11 97986414 97986449 -23857407 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1332 215 338 0 0 chr11 97986657 97986731 -23857125 + PB1D10 SINE Alu 16 89 -28 1 1332 332 198 29 0 chr11 97986797 97986876 -23856980 + L1MB7 LINE L1 5559 5640 -534 1 1332 238 307 0 51 chr11 97986906 97986985 -23856871 + RSINE1 SINE B4 3 77 -88 1 1332 695 259 131 19 chr11 97987021 97987289 -23856567 + L1MB7 LINE L1 5694 5991 -193 1 1332 1129 44 0 0 chr11 97987406 97987542 -23856314 + B1_Mus2 SINE Alu 1 136 -11 1 1332 264 30 0 0 chr11 97987543 97987576 -23856280 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1332 192 77 0 0 chr11 97987854 97987880 -23855976 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 1 1332 1122 61 0 20 chr11 97987884 97988034 -23855822 - B1_Mus2 SINE Alu 0 147 1 1 1332 488 91 34 11 chr11 97988036 97988125 -23855731 - B2_Mm2 SINE B2 -3 192 102 1 1332 712 159 64 14 chr11 97988138 97988278 -23855578 - B1_Mm SINE Alu 0 147 1 1 1332 959 41 0 0 chr11 97988663 97988786 -23855070 - B2_Mm2 SINE B2 -69 126 4 1 1332 537 202 139 0 chr11 97988825 97988954 -23854902 + B1_Mus2 SINE Alu 1 147 0 1 1332 1091 57 21 0 chr11 97989079 97989220 -23854636 + B1_Mus2 SINE Alu 1 144 -3 1 1332 231 174 65 0 chr11 97989459 97989505 -23854351 + Charlie12 DNA MER1_type 31 79 -2794 1 1332 242 303 88 34 chr11 97989791 97989938 -23853918 + RSINE1 SINE B4 2 156 -9 1 1332 235 122 73 0 chr11 97990329 97990370 -23853486 - B1_Mus2 SINE Alu -95 52 9 1 1332 704 203 174 22 chr11 97990379 97990571 -23853285 - B3 SINE B2 -6 210 9 1 1332 180 0 0 0 chr11 97990585 97990605 -23853251 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1332 652 190 0 104 chr11 97990605 97990769 -23853087 - B1_Mus2 SINE Alu 0 147 1 1 1332 364 315 17 17 chr11 97991078 97991214 -23852642 - L1M4b LINE L1 -1579 5427 5291 1 1332 1102 77 147 12 chr11 97991214 97991384 -23852472 - B2_Mm2 SINE B2 -1 194 2 1 1332 364 315 17 17 chr11 97991384 97991428 -23852428 - L1M4b LINE L1 -1716 5290 5248 1 1332 412 267 0 10 chr11 97991587 97991689 -23852167 - PB1D9 SINE Alu -18 102 2 1 1332 215 135 19 37 chr11 97991930 97991984 -23851872 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 1 1332 588 101 0 11 chr11 97991986 97992076 -23851780 - B2_Mm2 SINE B2 -90 105 17 1 1332 414 266 83 13 chr11 97992234 97992390 -23851466 - B3 SINE B2 -7 209 43 1 1332 220 257 26 26 chr11 97992423 97992499 -23851357 - B1_Mur4 SINE Alu -56 94 19 1 1332 304 269 99 7 chr11 97992562 97992704 -23851152 - L1M4b LINE L1 -4206 3128 2974 1 1332 286 253 197 0 chr11 97992792 97992931 -23850925 - L1M4b LINE L1 -4526 2576 2347 1 1332 273 257 100 0 chr11 97992967 97993037 -23850819 - PB1D10 SINE Alu -1 116 40 1 1332 24 0 0 0 chr11 97993268 97993292 -23850564 + AT_rich Low_complexity Low_complexity 1 24 0 1 1332 4036 20 0 0 chr11 97993331 97993786 -23850070 - L1Md_F3 LINE L1 -14 6570 6116 1 1332 813 47 0 0 chr11 97993787 97993894 -23849962 - B1_Mus1 SINE Alu -13 135 29 1 1332 407 347 97 0 chr11 97994249 97994465 -23849391 - L1M4 LINE L1 -447 5727 5491 1 1332 213 263 16 81 chr11 97994475 97994537 -23849319 - ID SINE ID -144 80 23 1 1332 241 241 169 0 chr11 97994549 97994632 -23849224 - L1M4 LINE L1 -804 5342 5246 1 1332 252 308 15 0 chr11 97995105 97995119 -23848737 + ID_B1 SINE B4 69 134 -90 1 1332 260 216 20 0 chr11 97995119 97995170 -23848686 + B1_Mus2 SINE Alu 2 53 -94 1 1332 361 158 0 0 chr11 97995174 97995231 -23848625 + RMER6B LTR ERVK 1 57 -404 1 1332 873 88 0 8 chr11 97995242 97995368 -23848488 + RMER6B LTR ERVK 337 461 0 1 1332 424 223 32 0 chr11 97995368 97995462 -23848394 + B1_Mur1 SINE Alu 52 148 -1 1 1332 252 200 0 18 chr11 97995600 97995656 -23848200 + MLT1H-int LTR MaLR 789 843 -566 1 1332 373 237 43 2 chr11 97995694 97995790 -23848066 + B1F SINE Alu 1 105 -22 1 1332 224 30 0 29 chr11 97995790 97995824 -23848032 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1332 486 274 41 30 chr11 97995873 97996042 -23847814 + B4A SINE B4 1 171 -121 1 1332 363 44 0 0 chr11 97996180 97996225 -23847631 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1332 468 0 0 0 chr11 97996225 97996276 -23847580 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1332 207 0 0 0 chr11 97996649 97996672 -23847184 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1332 992 87 72 0 chr11 97996696 97996834 -23847022 + B1_Mus1 SINE Alu 1 148 0 1 1332 818 189 0 26 chr11 97997022 97997174 -23846682 - B1_Mus1 SINE Alu 0 148 1 1 1332 212 234 72 79 chr11 97997666 97997805 -23846051 - B4A SINE B4 -81 211 74 1 1332 212 143 0 67 chr11 97997927 97997972 -23845884 + B2_Mm2 SINE B2 44 85 -110 1 1332 449 165 69 23 chr11 97997940 97998027 -23845829 + RSINE1 SINE B4 55 145 -20 1 1332 472 170 70 70 chr11 97998287 97998401 -23845455 - PB1D9 SINE Alu -1 119 6 1 1332 261 261 10 61 chr11 97998327 97998425 -23845431 - MT2B LTR ERVL -360 241 149 1 1332 708 110 396 0 chr11 97998628 97998782 -23845074 + B3 SINE B2 2 216 0 1 1332 1233 81 0 0 chr11 97998874 97999046 -23844810 + B2_Mm2 SINE B2 1 172 -23 1 1332 206 290 74 21 chr11 97999055 97999150 -23844706 + L2a LINE L2 3304 3403 -23 1 1332 231 88 0 0 chr11 97999266 97999300 -23844556 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 1 1332 231 250 153 0 chr11 97999392 97999464 -23844392 + RSINE1 SINE B4 64 146 -19 1 1332 560 80 66 57 chr11 97999500 97999606 -23844250 + B1_Mus2 SINE Alu 5 111 -36 1 1332 790 138 29 0 chr11 97999625 97999763 -23844093 - URR1B DNA MER1_type -4 221 80 1 1332 388 267 0 11 chr11 98000392 98000483 -23843373 - B1F SINE Alu -28 121 32 1 1332 340 162 150 0 chr11 98000509 98000589 -23843267 - ID_B1 SINE B4 -11 213 122 2 1332 301 135 24 119 chr11 98001568 98001652 -23842204 + PB1D9 SINE Alu 37 112 -8 3 1332 206 308 94 52 chr11 98001871 98001967 -23841889 - MIRb SINE MIR -140 128 29 4 1332 947 137 199 0 chr11 98001984 98002145 -23841711 + B2_Mm2 SINE B2 3 195 0 5 1332 402 230 77 82 chr11 98002606 98002800 -23841056 - B3A SINE B2 -5 193 1 6 1332 419 184 69 130 chr11 98003261 98003392 -23840464 - B1F SINE Alu 0 127 5 7 1332 642 208 236 6 chr11 98003559 98003733 -23840123 - B3 SINE B2 0 216 3 8 1332 207 0 0 0 chr11 98003809 98003832 -23840024 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1332 766 191 0 0 chr11 98003832 98003968 -23839888 - B1_Mus1 SINE Alu -12 136 1 1 1332 469 250 16 31 chr11 98004235 98004363 -23839493 + RSINE1 SINE B4 2 127 -38 1 1332 402 70 42 0 chr11 98004370 98004441 -23839415 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1332 1067 113 119 0 chr11 98004455 98004623 -23839233 + B2_Mm2 SINE B2 2 189 -6 1 1332 542 91 0 0 chr11 98004641 98004718 -23839138 + B1_Mus2 SINE Alu 2 78 -69 1 1332 378 213 36 36 chr11 98004718 98004747 -23839109 + B4 SINE B4 97 192 -100 1 1332 29 0 0 0 chr11 98005210 98005239 -23838617 + AT_rich Low_complexity Low_complexity 1 29 0 1 1332 281 186 14 0 chr11 98005404 98005474 -23838382 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1332 23 0 0 0 chr11 98005474 98005497 -23838359 + AT_rich Low_complexity Low_complexity 1 23 0 1 1332 533 206 84 42 chr11 98005502 98005644 -23838212 + B1F2 SINE Alu 2 149 0 1 1332 984 67 97 0 chr11 98005648 98005782 -23838074 + B1_Mm SINE Alu 1 147 0 2 1332 202 71 0 0 chr11 98005782 98005810 -23838046 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 1332 215 0 67 0 chr11 98005815 98005845 -23838011 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1332 456 120 50 12 chr11 98006803 98006901 -23836955 + B1_Mus1 SINE Alu 40 150 0 2 1332 546 239 32 69 chr11 98006909 98007098 -23836758 + B3A SINE B2 1 182 -16 2 1332 207 0 0 0 chr11 98007148 98007171 -23836685 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2 1332 271 239 42 0 chr11 98007300 98007371 -23836485 + PB1D7 SINE Alu 41 114 -6 2 1332 996 168 25 10 chr11 98007380 98007584 -23836272 + B3 SINE B2 4 210 -6 2 1332 315 0 0 0 chr11 98007608 98007643 -23836213 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1332 484 260 32 8 chr11 98007850 98007974 -23835882 - B1F SINE Alu -18 131 5 2 1332 305 250 48 39 chr11 98008089 98008193 -23835663 + PB1D10 SINE Alu 13 117 0 3 1332 1131 51 0 14 chr11 98008306 98008446 -23835410 + B1_Mm SINE Alu 4 141 -6 3 1332 207 0 0 0 chr11 98008447 98008470 -23835386 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1332 594 227 8 35 chr11 98008682 98008832 -23835024 - B1_Mur3 SINE Alu 0 149 2 3 1332 800 153 27 14 chr11 98008862 98009008 -23834848 + B1_Mus1 SINE Alu 1 148 0 3 1332 203 32 65 0 chr11 98010009 98010040 -23833816 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1332 235 200 0 0 chr11 98011515 98011560 -23832296 + (CCG)n Simple_repeat Simple_repeat 2 46 0 3 1332 339 171 128 37 chr11 98012445 98012554 -23831302 - PB1D9 SINE Alu 0 120 2 3 1332 1139 91 85 6 chr11 98012665 98012841 -23831015 - B2_Mm2 SINE B2 -4 191 2 3 1332 386 233 48 10 chr11 98013256 98013360 -23830496 + ID_B1 SINE B4 111 218 -6 3 1332 401 160 13 0 chr11 98013363 98013438 -23830418 + B1_Mur1 SINE Alu 74 149 0 4 1332 180 0 0 0 chr11 98014144 98014164 -23829692 + (CAG)n Simple_repeat Simple_repeat 1 20 0 4 1332 351 113 0 0 chr11 98014877 98014939 -23828917 + (A)n Simple_repeat Simple_repeat 1 62 0 4 1332 22 56 0 0 chr11 98015980 98016016 -23827840 + AT_rich Low_complexity Low_complexity 1 36 0 4 1332 265 229 0 16 chr11 98020093 98020155 -23823701 + PB1D10 SINE Alu 50 110 -7 4 1332 631 319 29 0 chr11 98020513 98020723 -23823133 + ID_B1 SINE B4 1 216 -8 4 1332 1626 181 89 50 chr11 98020730 98020971 -23822885 + RMER1B Other Other 690 921 -145 4 1332 270 0 0 0 chr11 98020971 98021001 -23822855 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1332 1626 181 89 50 chr11 98021001 98021120 -23822736 + RMER1B Other Other 922 1064 -2 4 1332 1337 78 5 77 chr11 98021130 98021243 -23822613 + B2_Mm1a SINE B2 1 111 -82 4 1332 1168 63 0 0 chr11 98021243 98021386 -23822470 + B1_Mm SINE Alu 2 144 -3 4 1332 243 0 0 0 chr11 98021386 98021413 -23822443 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1332 1337 78 5 77 chr11 98021413 98021506 -23822350 + B2_Mm1a SINE B2 112 192 -1 4 1332 25 0 0 0 chr11 98021959 98021984 -23821872 + AT_rich Low_complexity Low_complexity 1 25 0 5 1332 502 122 44 0 chr11 98022065 98022155 -23821701 + B1_Mus2 SINE Alu 16 109 -38 5 1332 180 77 0 0 chr11 98022164 98022190 -23821666 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1332 340 143 0 0 chr11 98022644 98022707 -23821149 + B3 SINE B2 147 209 -7 5 1332 328 243 50 75 chr11 98022791 98022911 -23820945 - PB1D10 SINE Alu 0 117 1 5 1332 431 200 0 74 chr11 98023130 98023238 -23820618 - B1_Mur4 SINE Alu 0 150 51 5 1332 222 189 56 19 chr11 98023249 98023303 -23820553 + B1_Mur1 SINE Alu 57 112 -37 5 1332 232 272 62 0 chr11 98023380 98023461 -23820395 - BC1_Mm scRNA scRNA -43 109 24 5 1332 290 163 182 109 chr11 98023484 98023594 -23820262 - PB1D9 SINE Alu -1 119 2 5 1332 1401 84 16 16 chr11 98023720 98023913 -23819943 - B2_Mm1a SINE B2 0 193 1 6 1332 943 89 188 19 chr11 98023919 98024079 -23819777 - B2_Mm2 SINE B2 -8 187 1 6 1332 355 326 48 28 chr11 98024566 98024711 -23819145 + B1F1 SINE Alu 1 148 -1 6 1332 345 24 0 0 chr11 98024810 98024852 -23819004 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1332 821 220 27 67 chr11 98025789 98026013 -23817843 + B3 SINE B2 2 216 0 6 1332 877 119 67 0 chr11 98026026 98026160 -23817696 + B1_Mus1 SINE Alu 5 147 -1 6 1332 959 121 103 3 chr11 98026229 98026459 -23817397 + ORR1A4 LTR MaLR 43 320 -9 6 1332 307 222 100 0 chr11 98026459 98026549 -23817307 - PB1D9 SINE Alu -17 103 5 6 1332 216 292 29 59 chr11 98026752 98026785 -23817071 + PB1D10 SINE Alu 17 115 -2 6 1332 260 232 101 0 chr11 98026785 98026854 -23817002 + ID_B1 SINE B4 147 222 -2 6 1332 1180 116 40 0 chr11 98026858 98027031 -23816825 + B2_Mm2 SINE B2 2 181 -14 7 1332 411 76 365 0 chr11 98027044 98027151 -23816705 + B2_Mm2 SINE B2 47 192 -3 7 1332 227 55 0 53 chr11 98027151 98027189 -23816667 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 7 1332 519 296 66 0 chr11 98027197 98027393 -23816463 + B3 SINE B2 8 216 0 7 1332 844 225 21 5 chr11 98028462 98028654 -23815202 + B3 SINE B2 21 215 -1 7 1332 219 208 0 0 chr11 98029074 98029122 -23814734 + B1F SINE Alu 95 142 -7 7 1332 680 172 271 6 chr11 98029335 98029505 -23814351 + B3 SINE B2 2 216 0 7 1332 289 225 62 12 chr11 98029523 98029604 -23814252 + MTC LTR MaLR 196 280 -141 7 1332 240 278 0 0 chr11 98029858 98029912 -23813944 + ID_B1 SINE B4 134 187 -37 7 1332 223 241 23 46 chr11 98030255 98030342 -23813514 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 7 1332 456 281 7 61 chr11 98030505 98030653 -23813203 + B1F SINE Alu 1 140 -9 8 1332 23 33 0 0 chr11 98030795 98030825 -23813031 + AT_rich Low_complexity Low_complexity 1 30 0 8 1332 224 275 14 0 chr11 98030954 98031023 -23812833 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1332 270 262 213 9 chr11 98031034 98031142 -23812714 + RSINE1 SINE B4 3 132 -33 8 1332 1108 113 42 21 chr11 98031392 98031581 -23812275 + B2_Mm2 SINE B2 1 193 -2 8 1332 1324 83 0 22 chr11 98031593 98031777 -23812079 + B2_Mm2 SINE B2 2 181 -14 8 1332 277 253 32 0 chr11 98031796 98031868 -23811988 + ID4 SINE ID 21 94 -58 8 1332 350 289 103 36 chr11 98031917 98032111 -23811745 + B4A SINE B4 86 292 0 8 1332 569 52 13 0 chr11 98032165 98032242 -23811614 + (GAAAA)n Simple_repeat Simple_repeat 3 80 0 8 1332 569 238 21 7 chr11 98033154 98033298 -23810558 + B1_Mur1 SINE Alu 2 147 -2 8 1332 288 261 78 43 chr11 98033373 98033489 -23810367 + B4 SINE B4 79 198 -94 9 1332 538 226 29 36 chr11 98033385 98033523 -23810333 + B1_Mur2 SINE Alu 6 142 -7 9 1332 486 129 12 12 chr11 98033896 98033982 -23809874 + BC1_Mm scRNA scRNA 1 86 -66 9 1332 405 200 0 14 chr11 98033982 98034053 -23809803 + B3 SINE B2 2 71 -145 9 1332 1556 62 0 5 chr11 98034223 98034417 -23809439 + B2_Mm2 SINE B2 1 193 -2 9 1332 251 304 22 81 chr11 98034815 98034951 -23808905 + B3 SINE B2 85 212 -4 9 1332 958 178 0 16 chr11 98034963 98035146 -23808710 + B2_Mm2 SINE B2 2 181 -14 9 1332 568 146 0 10 chr11 98035150 98035247 -23808609 + B1_Mus2 SINE Alu 52 147 0 9 1332 1409 60 43 16 chr11 98035504 98035692 -23808164 + B2_Mm2 SINE B2 2 194 -1 9 1332 598 176 294 29 chr11 98035919 98036089 -23807767 - B3 SINE B2 -1 215 1 9 1332 403 295 67 37 chr11 98036090 98036224 -23807632 - B1F1 SINE Alu -2 147 10 1 1332 793 152 34 20 chr11 98036267 98036415 -23807441 - B1_Mur4 SINE Alu 0 150 1 1 1332 422 229 36 0 chr11 98036447 98036530 -23807326 + B3A SINE B2 14 99 -99 1 1332 505 304 17 33 chr11 98036987 98037167 -23806689 + MTE2b LTR MaLR 1 177 -202 1 1332 1718 59 18 5 chr11 98037185 98037408 -23806448 + L1Md_F3 LINE L1 6358 6583 -1 1 1332 453 36 0 0 chr11 98037432 98037487 -23806369 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1332 512 234 52 52 chr11 98037537 98037672 -23806184 - B1_Mur3 SINE Alu -12 137 3 1 1332 233 250 28 0 chr11 98037786 98037858 -23805998 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 1 1332 242 276 49 73 chr11 98037865 98037947 -23805909 - ID4 SINE ID -2 81 2 1 1332 761 210 60 13 chr11 98037988 98038191 -23805665 - B2_Mm2 SINE B2 -5 211 2 1 1332 1095 82 0 13 chr11 98038259 98038408 -23805448 + B1_Mus2 SINE Alu 1 147 0 1 1332 449 317 28 0 chr11 98038493 98038635 -23805221 + ID_B1 SINE B4 78 223 -1 1 1332 494 235 75 8 chr11 98038638 98038771 -23805085 + B1_Mur1 SINE Alu 1 142 -7 1 1332 21 0 0 0 chr11 98038773 98038794 -23805062 + AT_rich Low_complexity Low_complexity 1 21 0 1 1332 694 98 0 19 chr11 98038841 98038945 -23804911 + B1_Mus2 SINE Alu 35 136 -11 1 1332 213 65 0 0 chr11 98038945 98038976 -23804880 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1332 429 229 74 28 chr11 98039165 98039273 -23804583 + PB1D9 SINE Alu 2 114 -6 1 1332 1489 82 0 5 chr11 98039313 98039508 -23804348 - B2_Mm2 SINE B2 0 195 2 1 1332 1107 95 0 0 chr11 98039744 98039892 -23803964 - B1_Mus1 SINE Alu 0 148 1 1 1332 1235 112 26 5 chr11 98039950 98040139 -23803717 + B2_Mm1t SINE B2 1 193 0 1 1332 258 32 0 0 chr11 98040139 98040170 -23803686 + (GAA)n Simple_repeat Simple_repeat 3 33 0 1 1332 630 151 116 23 chr11 98040181 98040310 -23803546 + B1_Mus1 SINE Alu 1 141 -7 1 1332 213 39 0 0 chr11 98040312 98040338 -23803518 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1 1332 180 0 0 0 chr11 98040576 98040596 -23803260 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1332 292 309 72 36 chr11 98040608 98040803 -23803053 - B4A SINE B4 -46 246 45 1 166 770 247 159 72 chr11 98041820 98042165 -23801691 + MTEa LTR MaLR 1 375 -4 1 1333 300 197 98 0 chr11 98042197 98042258 -23801598 + B1_Mus1 SINE Alu 7 73 -75 1 1333 787 162 0 37 chr11 98042263 98042398 -23801458 + B1_Mur4 SINE Alu 20 149 -1 1 1333 355 220 0 174 chr11 98042443 98042575 -23801281 + PB1D10 SINE Alu 1 109 -8 1 1333 213 203 65 104 chr11 98042635 98042712 -23801144 + B1_Mur1 SINE Alu 76 149 0 1 1333 799 200 212 0 chr11 98042931 98043101 -23800755 - B3 SINE B2 -10 206 1 1 1333 1217 34 0 26 chr11 98043227 98043378 -23800478 + B1_Mm SINE Alu 1 147 0 1 1333 334 310 9 146 chr11 98043440 98043659 -23800197 + ID_B1 SINE B4 27 215 -9 1 1333 858 243 9 51 chr11 98043673 98043700 -23800156 + B3 SINE B2 3 29 -187 1 1333 3727 37 7 0 chr11 98043700 98044133 -23799723 + RLTR10C LTR ERVK 1 436 0 1 1333 858 243 9 51 chr11 98044133 98044322 -23799534 + B3 SINE B2 30 210 -6 1 1333 327 221 0 95 chr11 98044460 98044565 -23799291 + PB1D10 SINE Alu 15 109 -8 1 1333 680 144 71 64 chr11 98044595 98044736 -23799120 + B1_Mur1 SINE Alu 1 142 -7 1 1333 273 356 82 15 chr11 98044785 98044919 -23798937 + RSINE1 SINE B4 23 165 0 1 1333 254 170 43 0 chr11 98045374 98045421 -23798435 - ID_B1 SINE B4 -58 166 118 1 1333 288 287 129 9 chr11 98045490 98045606 -23798250 - RSINE1 SINE B4 -33 132 3 1 1333 1184 36 34 45 chr11 98045625 98045801 -23798055 - L1Md_F3 LINE L1 0 6584 6411 1 1333 1184 55 0 0 chr11 98046049 98046189 -23797667 + B1_Mus1 SINE Alu 1 140 -8 1 1333 243 0 0 0 chr11 98046189 98046216 -23797640 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 1 1333 728 236 11 27 chr11 98046227 98046414 -23797442 + B3 SINE B2 28 211 -5 1 1333 707 152 22 29 chr11 98046447 98046583 -23797273 + B1_Mur4 SINE Alu 10 144 -6 1 1333 352 206 49 31 chr11 98047497 98047598 -23796258 + B3A SINE B2 2 101 -115 1 1333 314 333 29 0 chr11 98047639 98047741 -23796115 + PB1D10 SINE Alu 12 116 -1 1 1333 305 307 46 73 chr11 98047843 98047994 -23795862 + ID_B1 SINE B4 27 173 -51 1 1333 633 54 214 9 chr11 98048010 98048122 -23795734 - B1_Mus2 SINE Alu -1 146 12 1 1333 1637 32 16 0 chr11 98048123 98048313 -23795543 + B2_Mm1a SINE B2 1 193 0 1 1333 635 214 101 0 chr11 98048394 98048562 -23795294 + B3 SINE B2 1 185 -31 1 1333 441 0 0 0 chr11 98048571 98048620 -23795236 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1333 294 29 0 0 chr11 98048622 98048657 -23795199 + (CAAAG)n Simple_repeat Simple_repeat 3 37 0 1 1333 222 288 39 52 chr11 98048798 98048875 -23794981 - ID4_ SINE ID 0 83 8 1 1333 300 255 9 105 chr11 98049318 98049423 -23794433 + PB1D10 SINE Alu 10 104 -13 1 1333 1283 88 5 81 chr11 98049608 98049818 -23794038 + B2_Mm2 SINE B2 2 195 0 1 1333 368 272 32 8 chr11 98049837 98049963 -23793893 + MER2 DNA MER2_type 135 263 -82 1 1333 536 186 0 10 chr11 98049957 98050060 -23793796 - B1_Mus2 SINE Alu 0 147 46 1 1333 472 60 0 0 chr11 98050253 98050320 -23793536 - B1_Mus2 SINE Alu -79 68 2 1 1333 328 227 42 74 chr11 98050758 98050853 -23793003 + PB1D10 SINE Alu 20 111 -9 1 1333 318 310 26 26 chr11 98050893 98051009 -23792847 - PB1 SINE Alu -11 116 1 1 1333 435 306 0 0 chr11 98051038 98051149 -23792707 + PB1D9 SINE Alu 2 112 -8 1 1333 1008 196 39 29 chr11 98051173 98051378 -23792478 + B3 SINE B2 7 213 -3 1 1333 1014 44 82 0 chr11 98051448 98051583 -23792273 - B1_Mus2 SINE Alu -1 146 1 1 1333 252 267 0 75 chr11 98051583 98051676 -23792180 - RSINE1 SINE B4 -1 164 79 1 1333 319 240 6 0 chr11 98051739 98051816 -23792040 - B1_Mur4 SINE Alu -66 84 5 1 1333 936 220 0 0 chr11 98051829 98052011 -23791845 + B3 SINE B2 27 208 -8 1 1333 528 278 41 36 chr11 98052086 98052280 -23791576 - B3A SINE B2 -1 197 3 1 1333 230 281 35 35 chr11 98052345 98052430 -23791426 + RSINE1 SINE B4 3 87 -78 1 1333 252 234 31 15 chr11 98052481 98052546 -23791310 + MurSatRep1 Unknown Unknown 224 289 -1848 1 1333 465 240 124 0 chr11 98052620 98052741 -23791115 - B1_Mus1 SINE Alu -12 136 1 1 1333 227 143 0 23 chr11 98052750 98052793 -23791063 - B4A SINE B4 -68 224 183 1 1333 1434 75 21 0 chr11 98052857 98053043 -23790813 + B2_Mm2 SINE B2 2 191 -4 1 1333 188 35 35 0 chr11 98053052 98053081 -23790775 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1333 1019 73 7 0 chr11 98053081 98053218 -23790638 - B1_Mus2 SINE Alu -9 138 1 1 1333 276 200 105 13 chr11 98053228 98053304 -23790552 - ID4_ SINE ID 0 83 1 1 1333 750 54 113 30 chr11 98054845 98054978 -23788878 + B1_Mur4 SINE Alu 7 150 0 1 1333 744 120 45 8 chr11 98055122 98055256 -23788600 + B1_Mm SINE Alu 9 147 0 1 1333 239 339 0 0 chr11 98055296 98055355 -23788501 + ID4_ SINE ID 12 70 -13 1 1333 1054 129 11 18 chr11 98055422 98055617 -23788239 + B2_Mm2 SINE B2 1 200 -16 1 1333 21 0 0 0 chr11 98055627 98055648 -23788208 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 290 133 91 26 chr11 98055653 98055730 -23788126 + RLTR25B LTR ERVK 428 509 -519 1 1333 828 45 0 0 chr11 98055661 98055773 -23788083 + B1_Mus2 SINE Alu 36 147 0 1 1333 191 140 0 50 chr11 98055773 98055833 -23788023 + A-rich Low_complexity Low_complexity 1 57 0 1 1333 299 250 72 10 chr11 98056098 98056195 -23787661 - B1_Mur2 SINE Alu -8 141 39 1 1333 231 36 0 0 chr11 98056555 98056583 -23787273 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 1 1333 785 130 36 0 chr11 98056583 98056721 -23787135 - B1_Mur4 SINE Alu -5 145 3 1 1333 572 256 23 0 chr11 98056721 98056854 -23787002 + B1_Mur1 SINE Alu 9 144 -5 1 1333 773 173 35 53 chr11 98056855 98057026 -23786830 - B2_Mm2 SINE B2 -26 169 2 1 1333 26 0 0 0 chr11 98057028 98057054 -23786802 + AT_rich Low_complexity Low_complexity 1 26 0 1 1333 616 144 110 0 chr11 98057060 98057178 -23786678 + B1_Mur2 SINE Alu 18 148 -1 1 1333 2178 142 161 21 chr11 98057336 98057809 -23786047 - RMER15 LTR ERVL -3 572 34 1 1333 311 184 143 13 chr11 98057842 98057919 -23785937 - B1_Mus2 SINE Alu -16 131 45 1 1333 1075 172 79 8 chr11 98057985 98058225 -23785631 - RLTR14-int LTR ERV1 -4090 1227 971 1 1333 1400 74 0 21 chr11 98058225 98058418 -23785438 - B2_Mm2 SINE B2 -5 190 2 1 1333 1147 88 0 0 chr11 98058458 98058605 -23785251 - B1_Mus1 SINE Alu 0 148 2 1 1333 853 156 141 0 chr11 98058691 98058760 -23785096 - RLTR14-int LTR ERV1 -4390 927 845 1 1333 846 83 0 0 chr11 98058760 98058893 -23784963 + (GA)n Simple_repeat Simple_repeat 1 133 0 1 1333 853 156 141 0 chr11 98058893 98059015 -23784841 - RLTR14-int LTR ERV1 -4473 844 711 1 1333 512 276 22 38 chr11 98059178 98059465 -23784391 - RLTR14-int LTR ERV1 -4939 378 55 1 1333 1152 222 194 47 chr11 98059465 98059956 -23783900 - RMER2 LTR ERV1 -4 563 1 1 1333 363 315 10 75 chr11 98059956 98060009 -23783847 - RLTR14-int LTR ERV1 -5263 54 1 1 1333 1842 167 55 22 chr11 98060012 98060379 -23783477 - RLTR14 LTR ERV1 -3 379 1 1 1333 229 272 165 0 chr11 98060481 98060584 -23783272 - PB1D7 SINE Alu 0 120 1 1 1333 528 198 0 0 chr11 98060642 98060733 -23783123 + B1_Mur2 SINE Alu 1 91 -58 1 1333 446 204 88 40 chr11 98060735 98060883 -23782973 + RMER10A LTR ERVL 226 380 -62 2 1333 636 250 106 100 chr11 98060897 98061226 -23782630 - RMER10A LTR ERVL -111 331 1 2 1333 238 281 53 0 chr11 98061312 98061369 -23782487 + PB1 SINE Alu 66 125 -2 2 1333 655 230 52 0 chr11 98061374 98061509 -23782347 + B1_Mur1 SINE Alu 1 142 -7 2 1333 279 293 61 54 chr11 98061600 98061748 -23782108 + B1F2 SINE Alu 1 149 0 2 1333 426 20 0 0 chr11 98061883 98061934 -23781922 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1333 466 232 82 47 chr11 98062057 98062229 -23781627 - B3 SINE B2 -28 167 2 2 1333 730 113 70 0 chr11 98062462 98062577 -23781279 - B1_Mus1 SINE Alu -25 123 1 2 1333 272 264 55 122 chr11 98062577 98062653 -23781203 - MT2B2 LTR ERVL -425 159 96 2 1333 1005 76 20 59 chr11 98062853 98063006 -23780850 - B1_Mm SINE Alu 0 147 1 2 1333 195 100 0 0 chr11 98063094 98063124 -23780732 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1333 221 225 41 68 chr11 98063249 98063337 -23780519 + PB1D7 SINE Alu 28 113 -36 2 1333 989 71 14 47 chr11 98063523 98063671 -23780185 + B1_Mur4 SINE Alu 1 143 -7 2 1333 426 276 82 13 chr11 98066493 98066651 -23777205 + MIR SINE MIR 84 252 -10 2 1333 337 257 128 0 chr11 98066872 98067020 -23776836 - L1ME2z LINE L1 -160 6284 6118 2 1333 592 265 0 56 chr11 98067078 98067222 -23776634 - B1F SINE Alu -1 148 13 2 1333 986 99 7 7 chr11 98067348 98067490 -23776366 - B1_Mus1 SINE Alu -4 144 3 2 1333 313 272 8 47 chr11 98067670 98067765 -23776091 + B1_Mur3 SINE Alu 49 148 -1 2 1333 1566 38 11 0 chr11 98067815 98068001 -23775855 + B2_Mm1a SINE B2 2 189 -4 2 1333 307 341 11 0 chr11 98068047 98068138 -23775718 + PB1D10 SINE Alu 26 117 0 2 1333 218 273 182 0 chr11 98068158 98068224 -23775632 + ID2 SINE ID 2 79 -4 2 1333 33 0 0 0 chr11 98068254 98068287 -23775569 + AT_rich Low_complexity Low_complexity 1 33 0 2 1333 606 291 64 20 chr11 98068400 98068603 -23775253 + B3 SINE B2 2 213 -3 2 1333 359 164 98 28 chr11 98068756 98068868 -23774988 + B1_Mur4 SINE Alu 1 150 0 2 1333 234 307 11 64 chr11 98069028 98069059 -23774797 - B1F SINE Alu 0 149 119 2 1333 1106 62 0 20 chr11 98069059 98069207 -23774649 - B1_Mm SINE Alu 0 147 3 2 1333 234 307 11 64 chr11 98069207 98069269 -23774587 - B1F SINE Alu -31 118 62 2 1333 404 276 128 33 chr11 98069285 98069465 -23774391 - B3A SINE B2 -1 197 1 2 1333 233 350 46 93 chr11 98069492 98069643 -23774213 - B4 SINE B4 -59 233 90 2 1333 1155 122 17 0 chr11 98069819 98069999 -23773857 - B2_Mm2 SINE B2 -9 186 4 2 1333 429 226 11 21 chr11 98070026 98070121 -23773735 - B3 SINE B2 -5 211 118 2 1333 574 203 42 174 chr11 98070209 98070375 -23773481 - B3 SINE B2 0 195 43 2 1333 1068 62 0 76 chr11 98070375 98070532 -23773324 - B1_Mus1 SINE Alu 0 148 4 2 1333 574 176 26 183 chr11 98070532 98070579 -23773277 - B3 SINE B2 -174 42 1 2 1333 832 146 0 8 chr11 98070609 98070740 -23773116 - B1_Mus2 SINE Alu 0 147 18 2 1333 1195 107 22 6 chr11 98070770 98070948 -23772908 - B2_Mm2 SINE B2 -14 181 1 2 1333 559 268 109 10 chr11 98070958 98071150 -23772706 - B3 SINE B2 -5 211 1 2 1333 387 301 16 47 chr11 98071174 98071206 -23772650 - PB1 SINE Alu -2 125 93 2 1333 1598 26 21 0 chr11 98071206 98071395 -23772461 - B2_Mm1t SINE B2 0 193 1 2 1333 523 155 4 11 chr11 98071395 98071491 -23772365 - B1_Mus1 SINE Alu -35 92 1 2 1333 295 213 0 0 chr11 98071492 98071539 -23772317 - B1_Mus2 SINE Alu -94 53 7 2 1333 253 260 45 45 chr11 98071539 98071574 -23772282 - B4A SINE B4 -149 130 55 2 1333 327 233 125 23 chr11 98072780 98072868 -23770988 - RSINE1 SINE B4 -35 130 34 2 1333 315 261 144 93 chr11 98072910 98073007 -23770849 - PB1D10 SINE Alu -14 103 2 2 1333 771 208 14 0 chr11 98073114 98073258 -23770598 - B1_Mur4 SINE Alu -3 147 2 2 1333 326 279 163 58 chr11 98073263 98073453 -23770403 - B3 SINE B2 -6 210 1 2 1333 710 262 38 14 chr11 98073471 98073680 -23770176 - B3 SINE B2 -2 214 1 2 1333 1198 55 0 0 chr11 98073778 98073924 -23769932 - B1_Mm SINE Alu 0 147 2 2 1333 597 94 0 0 chr11 98073951 98074036 -23769820 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1333 328 52 17 33 chr11 98074098 98074158 -23769698 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1333 1177 61 0 7 chr11 98074159 98074307 -23769549 - B1_Mus2 SINE Alu 0 147 1 2 1333 266 288 39 52 chr11 98074369 98074446 -23769410 - B4 SINE B4 -1 291 216 2 1333 1080 101 0 7 chr11 98074456 98074605 -23769251 - B1_Mus1 SINE Alu 0 148 1 2 1333 406 143 61 61 chr11 98074624 98074706 -23769150 + B1_Mur2 SINE Alu 13 94 -55 2 1333 755 215 0 20 chr11 98074743 98074890 -23768966 + B1_Mus1 SINE Alu 5 148 0 2 1333 497 234 240 23 chr11 98074913 98075088 -23768768 - B3 SINE B2 -2 214 2 2 1333 237 362 113 9 chr11 98075111 98075217 -23768639 - B3A SINE B2 -80 118 2 2 1333 331 333 32 16 chr11 98075329 98075454 -23768402 - PB1 SINE Alu 0 127 1 2 1333 521 216 34 17 chr11 98075475 98075593 -23768263 - PB1D9 SINE Alu 0 120 1 2 1333 22 35 0 0 chr11 98075662 98075691 -23768165 + AT_rich Low_complexity Low_complexity 1 29 0 2 1333 507 310 56 12 chr11 98075735 98075895 -23767961 + B4 SINE B4 124 290 -2 2 1333 620 290 26 0 chr11 98076179 98076334 -23767522 + B3 SINE B2 1 159 -57 2 1333 704 197 8 0 chr11 98076472 98076604 -23767252 - B1_Mur3 SINE Alu 0 149 17 2 1333 313 252 115 130 chr11 98076630 98076822 -23767034 - B3A SINE B2 -6 192 2 2 1333 324 336 85 15 chr11 98077000 98077130 -23766726 + B1F1 SINE Alu 11 149 0 2 1333 501 185 135 23 chr11 98077135 98077268 -23766588 + B1_Mus1 SINE Alu 1 148 0 2 1333 310 272 12 36 chr11 98077279 98077363 -23766493 - PB1D9 SINE Alu -36 84 3 2 1333 59 0 0 14 chr11 98077679 98077711 -23766145 + AT_rich Low_complexity Low_complexity 1 32 0 2 1333 1266 108 0 6 chr11 98077711 98077888 -23765968 - B2_Mm2 SINE B2 -18 177 2 2 1333 59 0 0 14 chr11 98077888 98077925 -23765931 + AT_rich Low_complexity Low_complexity 1 37 0 2 1333 767 182 16 0 chr11 98078036 98078162 -23765694 - B1_Mur2 SINE Alu -20 129 2 2 1333 1081 68 7 27 chr11 98078243 98078393 -23765463 + B1_Mus1 SINE Alu 2 148 0 2 1333 207 0 0 0 chr11 98078498 98078521 -23765335 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1333 325 314 0 0 chr11 98078554 98078624 -23765232 + B3 SINE B2 137 206 -10 2 1333 450 222 178 41 chr11 98078630 98078799 -23765057 + B3A SINE B2 1 192 -6 2 1333 221 214 35 18 chr11 98078870 98078927 -23764929 + B1F SINE Alu 41 98 -51 2 1333 426 85 0 0 chr11 98079010 98079069 -23764787 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 2 1333 1087 75 0 20 chr11 98079138 98079288 -23764568 - B1_Mus1 SINE Alu 0 148 2 2 1333 278 356 78 42 chr11 98079660 98079822 -23764034 - ID_B1 SINE B4 -37 187 20 2 1333 831 280 0 6 chr11 98079822 98079998 -23763858 + B3 SINE B2 2 176 -40 2 1333 28 71 0 0 chr11 98080001 98080057 -23763799 + AT_rich Low_complexity Low_complexity 1 56 0 2 1333 612 168 188 31 chr11 98080089 98080249 -23763607 - B2_Mm2 SINE B2 -10 185 1 2 1333 618 299 34 0 chr11 98080588 98080735 -23763121 - B3 SINE B2 -4 212 61 2 1333 803 149 49 49 chr11 98080816 98080978 -23762878 - B2_Mm2 SINE B2 -6 189 28 2 1333 1362 207 99 66 chr11 98081117 98081333 -23762523 - ORR1C2 LTR MaLR 0 384 165 2 1333 222 37 0 0 chr11 98081333 98081360 -23762496 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 2 1333 1317 100 21 0 chr11 98081360 98081550 -23762306 - B2_Mm2 SINE B2 -1 194 1 2 1333 1362 207 99 66 chr11 98081550 98081694 -23762162 - ORR1C2 LTR MaLR -220 164 12 2 1333 285 161 0 31 chr11 98081710 98081774 -23762082 - PB1D9 SINE Alu 0 120 59 2 1333 884 94 7 41 chr11 98081802 98081947 -23761909 - B1_Mus2 SINE Alu -7 140 1 2 1333 549 189 27 2 chr11 98081954 98082072 -23761784 + B1_Mur4 SINE Alu 23 149 0 2 1333 318 314 38 83 chr11 98081957 98082089 -23761767 + B4 SINE B4 111 236 -56 2 1333 1493 49 16 0 chr11 98082521 98082705 -23761151 - B2_Mm2 SINE B2 -8 187 1 2 1333 21 57 0 0 chr11 98082705 98082740 -23761116 + AT_rich Low_complexity Low_complexity 1 35 0 2 1333 536 269 180 36 chr11 98082816 98083094 -23760762 - MER2 DNA MER2_type -27 318 1 2 1333 213 191 0 130 chr11 98083094 98083132 -23760724 + B2_Mm2 SINE B2 44 74 -121 2 1333 338 159 13 80 chr11 98083408 98083483 -23760373 - RSINE1 SINE B4 -21 144 75 2 1333 225 250 0 48 chr11 98083618 98083681 -23760175 - B1_Mm SINE Alu -7 140 81 2 1333 264 208 0 0 chr11 98084192 98084240 -23759616 - B2_Mm2 SINE B2 -146 49 2 2 1333 661 260 0 0 chr11 98084277 98084400 -23759456 - B1_Mm SINE Alu -23 124 2 2 1333 659 158 55 0 chr11 98084409 98084536 -23759320 - B1_Mur2 SINE Alu -7 142 9 2 1333 489 307 67 6 chr11 98084561 98084725 -23759131 - B3A SINE B2 -15 183 10 2 1333 312 182 57 57 chr11 98084762 98084832 -23759024 - B1_Mur2 SINE Alu -13 136 67 2 1333 357 313 17 34 chr11 98084846 98084965 -23758891 - RSINE1 SINE B4 -36 129 13 2 1333 211 230 89 63 chr11 98085115 98085194 -23758662 + PB1D9 SINE Alu 34 114 -6 2 1333 581 273 56 6 chr11 98085227 98085389 -23758467 + B3 SINE B2 47 216 0 3 1333 959 121 45 1 chr11 98086125 98086299 -23757557 - B2_Mm2 SINE B2 -4 189 1 3 1333 335 215 103 0 chr11 98086410 98086502 -23757354 - PB1D10 SINE Alu -10 110 7 3 1333 273 274 82 12 chr11 98086429 98086514 -23757342 - ID_B1 SINE B4 -57 167 77 3 1333 242 306 70 35 chr11 98086714 98086829 -23757027 + ID_B1 SINE B4 2 120 -104 3 1333 224 349 105 0 chr11 98087084 98087170 -23756686 + PB1 SINE Alu 14 108 -19 3 1333 232 250 0 59 chr11 98087326 98087377 -23756479 + PB1 SINE Alu 23 70 -57 3 1333 607 252 14 7 chr11 98087404 98087548 -23756308 + B1_Mur1 SINE Alu 3 147 -2 3 1333 498 269 0 0 chr11 98087569 98087677 -23756179 - B1_Mur2 SINE Alu -41 108 1 3 1333 246 279 17 103 chr11 98087573 98087689 -23756167 - MT2B LTR ERVL -344 257 152 3 1333 189 0 0 0 chr11 98087929 98087950 -23755906 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1333 1168 108 49 0 chr11 98088430 98088615 -23755241 + B2_Mm2 SINE B2 2 195 0 3 1333 1194 48 0 0 chr11 98088617 98088764 -23755092 + B1_Mm SINE Alu 1 147 0 3 1333 336 287 46 0 chr11 98088829 98088916 -23754940 + PB1D9 SINE Alu 20 110 -10 3 1333 257 351 84 63 chr11 98089361 98089504 -23754352 + RSINE1 SINE B4 20 165 0 3 1333 193 128 21 21 chr11 98089505 98089553 -23754303 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1333 1590 37 11 0 chr11 98089671 98089862 -23753994 - B2_Mm1t SINE B2 0 193 1 3 1333 379 314 0 5 chr11 98089933 98090039 -23753817 + B1F SINE Alu 15 117 0 3 1333 299 235 58 14 chr11 98090384 98090453 -23753403 + ID4 SINE ID 2 73 -10 3 1333 238 258 30 0 chr11 98090585 98090651 -23753205 + PB1D10 SINE Alu 45 112 -5 3 1333 185 300 32 48 chr11 98090651 98090714 -23753142 + MER5A DNA MER1_type 13 74 -115 3 1333 700 113 43 9 chr11 98090714 98090830 -23753026 + PB1D9 SINE Alu 1 120 0 3 1333 340 333 62 10 chr11 98090936 98091033 -23752823 + B1_Mur2 SINE Alu 2 103 -46 3 1333 21 0 0 0 chr11 98091037 98091058 -23752798 + AT_rich Low_complexity Low_complexity 1 21 0 3 1333 674 236 7 7 chr11 98091681 98091826 -23752030 - B1_Mur4 SINE Alu 0 150 6 3 1333 282 231 15 0 chr11 98092833 98092898 -23750958 - L1MC5 LINE L1 -929 7032 6967 3 1333 725 253 6 6 chr11 98093013 98093172 -23750684 - B3A SINE B2 -37 161 3 3 1333 1326 73 5 63 chr11 98093328 98093533 -23750323 - B2_Mm1t SINE B2 0 193 1 3 1333 565 263 60 0 chr11 98093734 98093867 -23749989 - ID_B1 SINE B4 -3 221 81 3 1333 557 248 7 72 chr11 98093929 98094081 -23749775 - B1_Mur2 SINE Alu -5 144 3 3 1333 674 199 99 33 chr11 98094225 98094407 -23749449 - B2_Mm2 SINE B2 0 195 2 3 1333 871 82 74 0 chr11 98094658 98094780 -23749076 + B2_Mm2 SINE B2 1 131 -64 3 1333 637 181 94 0 chr11 98095036 98095163 -23748693 + B1_Mur3 SINE Alu 10 148 -1 3 1333 566 212 18 0 chr11 98095471 98095584 -23748272 + B1_Mur1 SINE Alu 35 149 0 3 1333 465 240 152 39 chr11 98095606 98095784 -23748072 + B3A SINE B2 1 198 0 3 1333 244 312 70 44 chr11 98095983 98096097 -23747759 + PB1D10 SINE Alu 1 117 0 3 1333 389 230 11 11 chr11 98096156 98096244 -23747612 - B1_Mur4 SINE Alu -5 145 58 3 1333 407 296 138 23 chr11 98096686 98096904 -23746952 - L1MC4 LINE L1 -548 7494 7252 3 1333 263 269 100 18 chr11 98096915 98097025 -23746831 - PB1D9 SINE Alu 0 120 2 3 1333 282 262 0 0 chr11 98097029 98097113 -23746743 + CT-rich Low_complexity Low_complexity 3 86 0 3 1333 662 243 64 26 chr11 98097122 98097278 -23746578 - B3 SINE B2 -7 209 48 3 1333 260 331 120 13 chr11 98097383 98097533 -23746323 - B4 SINE B4 -126 166 1 3 1333 574 254 40 45 chr11 98098140 98098387 -23745469 - RCHARR1 DNA MER1_type -1 973 728 3 1333 953 63 0 30 chr11 98098569 98098700 -23745156 - B1_Mus1 SINE Alu 0 148 22 3 1333 438 296 67 106 chr11 98098577 98098701 -23745155 - B4 SINE B4 -72 220 111 3 1333 348 216 518 0 chr11 98098701 98098840 -23745016 + B3 SINE B2 2 212 -4 3 1333 438 296 67 106 chr11 98098840 98098923 -23744933 - B4 SINE B4 -182 110 21 3 1333 498 192 30 37 chr11 98098962 98099097 -23744759 - RCHARR1 DNA MER1_type -452 522 389 3 1333 664 175 125 0 chr11 98099119 98099239 -23744617 - B1_Mur2 SINE Alu -14 135 1 3 1333 517 208 92 0 chr11 98099283 98099403 -23744453 - B1_Mur2 SINE Alu -5 144 14 3 1333 183 80 0 0 chr11 98099457 98099482 -23744374 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1333 554 310 109 10 chr11 98099497 98099699 -23744157 - RCHARR1 DNA MER1_type -694 280 59 3 1333 25 0 0 0 chr11 98099745 98099770 -23744086 + AT_rich Low_complexity Low_complexity 1 25 0 3 1333 279 208 0 0 chr11 98099791 98099844 -23744012 - B2_Mm2 SINE B2 -94 101 49 3 1333 1103 118 59 0 chr11 98099854 98100023 -23743833 - B2_Mm1t SINE B2 -14 179 1 3 1333 1184 125 38 5 chr11 98100106 98100291 -23743565 - B2_Mm2 SINE B2 -2 193 3 3 1333 399 317 0 68 chr11 98100454 98100586 -23743270 + B3 SINE B2 1 123 -93 3 1333 647 212 72 13 chr11 98100565 98100718 -23743138 - B3 SINE B2 -5 211 50 3 1333 455 381 14 0 chr11 98101115 98101254 -23742602 + RSINE1 SINE B4 3 143 -22 3 1333 388 239 11 43 chr11 98101327 98101419 -23742437 - RSINE1 SINE B4 -69 96 8 3 1333 234 277 0 0 chr11 98101473 98101538 -23742318 + T-rich Low_complexity Low_complexity 1 65 0 3 1333 571 246 14 21 chr11 98101608 98101749 -23742107 + B1_Mm SINE Alu 2 141 -6 3 1333 490 184 184 0 chr11 98102325 98102450 -23741406 - B1_Mur2 SINE Alu 0 149 2 3 1333 221 176 115 19 chr11 98102492 98102544 -23741312 - RSINE1 SINE B4 -38 127 71 3 1333 731 264 44 22 chr11 98102524 98102706 -23741150 - B3 SINE B2 -29 187 2 3 1333 248 296 120 20 chr11 98103534 98103634 -23740222 + PB1D10 SINE Alu 6 115 -2 3 1333 236 317 64 40 chr11 98103766 98103782 -23740074 - ID_B1 SINE B4 -3 221 94 3 1333 489 259 0 9 chr11 98103782 98103891 -23739965 - B1_Mur1 SINE Alu -29 120 13 3 1333 306 297 27 0 chr11 98104051 98104125 -23739731 - RSINE1 SINE B4 -87 78 3 3 1333 1592 31 0 30 chr11 98104340 98104538 -23739318 - B2_Mm1t SINE B2 0 193 2 3 1333 1191 55 7 0 chr11 98105033 98105179 -23738677 - B1_Mus2 SINE Alu 0 147 1 3 1333 291 122 0 0 chr11 98105351 98105400 -23738456 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1333 512 286 50 0 chr11 98105401 98105520 -23738336 - B3 SINE B2 -35 181 57 3 1333 388 322 9 0 chr11 98105886 98106001 -23737855 + ID_B1 SINE B4 88 203 -21 3 1333 407 326 52 7 chr11 98106208 98106344 -23737512 - RSINE1 SINE B4 -21 144 3 3 1333 947 226 29 0 chr11 98108073 98108281 -23735575 + B3 SINE B2 3 216 0 3 1333 765 144 77 28 chr11 98109620 98109763 -23734093 - B1_Mur4 SINE Alu 0 150 1 3 1333 22 35 0 0 chr11 98112056 98112085 -23731771 + AT_rich Low_complexity Low_complexity 1 29 0 3 1333 183 80 0 0 chr11 98112087 98112112 -23731744 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1333 255 125 0 0 chr11 98112614 98112654 -23731202 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1333 29 47 0 0 chr11 98113413 98113456 -23730400 + AT_rich Low_complexity Low_complexity 1 43 0 3 1333 27 0 0 0 chr11 98114076 98114103 -23729753 + AT_rich Low_complexity Low_complexity 1 27 0 3 1333 22 0 0 0 chr11 98114369 98114391 -23729465 + AT_rich Low_complexity Low_complexity 1 22 0 3 1333 342 0 0 0 chr11 98114552 98114590 -23729266 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1333 198 103 0 0 chr11 98115211 98115240 -23728616 + (GAA)n Simple_repeat Simple_repeat 3 31 0 3 1333 695 291 21 32 chr11 98117095 98117283 -23726573 - B3A SINE B2 -7 191 6 3 1333 207 0 0 0 chr11 98117299 98117322 -23726534 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1333 889 71 95 0 chr11 98117322 98117448 -23726408 - B1_Mus1 SINE Alu -10 138 1 3 1333 369 214 174 0 chr11 98118219 98118317 -23725539 - B1_Mur2 SINE Alu -20 129 15 3 1333 520 195 168 16 chr11 98118455 98118580 -23725276 - B1_Mur3 SINE Alu 0 149 6 3 1333 233 159 0 64 chr11 98118812 98118859 -23724997 - MIRm SINE MIR -17 259 216 3 1333 521 225 155 0 chr11 98118864 98118993 -23724863 - B1_Mur1 SINE Alu 0 149 1 3 1333 433 264 22 0 chr11 98119314 98119405 -23724451 + ID_B1 SINE B4 119 211 -13 3 1333 476 219 16 58 chr11 98119437 98119558 -23724298 - PB1D9 SINE Alu 0 120 5 3 1333 25 0 0 0 chr11 98119562 98119587 -23724269 + AT_rich Low_complexity Low_complexity 1 25 0 3 1333 379 160 107 0 chr11 98119713 98119788 -23724068 - B3 SINE B2 -92 124 42 3 1333 1026 170 32 46 chr11 98119788 98120004 -23723852 - B3 SINE B2 -2 214 2 3 1333 26 93 0 0 chr11 98120004 98120079 -23723777 + AT_rich Low_complexity Low_complexity 1 75 0 3 1333 782 171 50 0 chr11 98120080 98120220 -23723636 - B1_Mus1 SINE Alu 0 148 2 3 1333 477 256 105 88 chr11 98120220 98120253 -23723603 - B4 SINE B4 -207 85 50 3 1333 258 234 112 38 chr11 98120490 98120570 -23723286 - ID_B1 SINE B4 -1 223 138 3 1333 681 196 43 106 chr11 98120827 98120867 -23722989 + ID_B1 SINE B4 49 222 0 3 1333 1141 68 0 0 chr11 98120867 98121013 -23722843 + B1_Mm SINE Alu 2 147 0 3 1333 1140 68 0 33 chr11 98121162 98121314 -23722542 + B1_Mm SINE Alu 1 147 0 4 1333 255 316 126 15 chr11 98122862 98122997 -23720859 - MIR3 SINE MIR -3 205 56 4 1333 362 263 120 10 chr11 98123199 98123299 -23720557 + PB1D9 SINE Alu 1 111 -9 4 1333 510 255 107 33 chr11 98123314 98123464 -23720392 + RSINE1 SINE B4 5 165 0 4 1333 1352 77 50 0 chr11 98125246 98125428 -23718428 - B2_Mm1t SINE B2 -1 192 2 4 1333 315 102 17 18 chr11 98126335 98126395 -23717461 + L1_Mus3 LINE L1 6092 6139 -499 4 1333 341 242 53 0 chr11 98128994 98129089 -23714767 - MIR3 SINE MIR 0 208 109 4 1333 1650 26 11 0 chr11 98130460 98130651 -23713205 + B2_Mm1a SINE B2 1 193 0 4 1333 1190 54 7 0 chr11 98131036 98131183 -23712673 - B1_Mus1 SINE Alu 0 148 1 4 1333 446 305 0 19 chr11 98132092 98132199 -23711657 - PB1D10 SINE Alu -1 116 12 4 1333 3164 31 25 25 chr11 98132199 98132595 -23711261 - MTA_Mm LTR MaLR 0 396 1 4 1333 214 191 21 0 chr11 98132639 98132686 -23711170 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1333 671 183 219 0 chr11 98132688 98132852 -23711004 - B3 SINE B2 -15 201 2 4 1333 1149 56 21 0 chr11 98133522 98133665 -23710191 + B1_Mus2 SINE Alu 2 147 0 4 1333 200 163 0 58 chr11 98133673 98133725 -23710131 + G-rich Low_complexity Low_complexity 3 51 0 4 1333 195 186 0 0 chr11 98133926 98133969 -23709887 + CT-rich Low_complexity Low_complexity 3 45 0 4 1333 532 225 17 35 chr11 98134565 98134680 -23709176 - 5S rRNA rRNA -8 113 1 4 1333 234 195 229 12 chr11 98135554 98135637 -23708219 + MIR SINE MIR 11 111 -151 4 1333 618 299 102 0 chr11 98135994 98136181 -23707675 - B3 SINE B2 -10 206 1 4 1333 261 0 0 0 chr11 98136220 98136249 -23707607 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1333 737 208 5 106 chr11 98136682 98136737 -23707119 - B3 SINE B2 -7 209 168 4 1333 1277 34 0 0 chr11 98136737 98136884 -23706972 - B1_Mm SINE Alu 0 147 1 4 1333 737 208 5 106 chr11 98136884 98136896 -23706960 - B3 SINE B2 -49 167 160 4 1333 257 0 30 0 chr11 98136896 98136929 -23706927 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1333 737 208 5 106 chr11 98136929 98137048 -23706808 - B3 SINE B2 -57 159 41 4 1333 568 175 208 0 chr11 98137170 98137290 -23706566 - B1_Mus2 SINE Alu 0 147 3 4 1333 399 113 0 0 chr11 98137336 98137398 -23706458 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1333 530 223 211 29 chr11 98137399 98137570 -23706286 - B3 SINE B2 -13 203 2 4 1333 392 287 131 0 chr11 98137751 98137873 -23705983 - RSINE1 SINE B4 -15 150 13 4 1333 334 228 76 0 chr11 98137892 98137971 -23705885 - ID_B1 SINE B4 -7 217 133 4 1333 211 227 23 0 chr11 98138016 98138060 -23705796 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1333 185 0 40 0 chr11 98138093 98138118 -23705738 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1333 1157 82 0 14 chr11 98138118 98138266 -23705590 - B1_Mus2 SINE Alu 0 147 2 4 1333 453 239 0 61 chr11 98138279 98138377 -23705479 - RSINE1 SINE B4 -63 102 11 4 1333 229 256 67 124 chr11 98138297 98138386 -23705470 - B2_Mm1t SINE B2 -109 84 1 4 1333 243 0 0 0 chr11 98138423 98138450 -23705406 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 4 1333 573 286 53 0 chr11 98138500 98138633 -23705223 - B3A SINE B2 -57 141 2 4 1333 989 179 17 94 chr11 98138654 98138888 -23704968 - B3 SINE B2 0 216 1 4 1333 789 232 19 72 chr11 98138891 98139100 -23704756 - B3A SINE B2 0 198 1 4 1333 427 243 108 89 chr11 98139222 98139246 -23704610 - B4A SINE B4 -48 244 89 4 1333 574 225 108 0 chr11 98139246 98139375 -23704481 - B1_Mur3 SINE Alu -3 146 4 4 1333 941 78 162 0 chr11 98139495 98139637 -23704219 + B2_Mm1t SINE B2 3 167 -26 4 1333 306 114 196 18 chr11 98139710 98139822 -23704034 + B2_Mm2 SINE B2 48 195 0 4 1333 520 204 10 0 chr11 98139859 98139957 -23703899 - B1_Mus1 SINE Alu -13 135 37 4 1333 618 297 13 7 chr11 98139956 98140105 -23703751 - ID_B1 SINE B4 -5 219 70 4 1333 271 306 61 61 chr11 98140105 98140133 -23703723 + YREP_Mm Unknown Unknown 182 358 -1454 4 1333 584 245 21 14 chr11 98140157 98140302 -23703554 + B1F SINE Alu 3 148 -1 4 1333 539 144 169 39 chr11 98140316 98140446 -23703410 + B1_Mur1 SINE Alu 2 148 -1 4 1333 240 254 16 16 chr11 98140446 98140510 -23703346 + B4A SINE B4 3 66 -226 4 1333 488 264 31 16 chr11 98140522 98140649 -23703207 + B4A SINE B4 109 237 -55 4 1333 626 244 24 24 chr11 98140849 98141013 -23702843 - RSINE1 SINE B4 0 165 2 4 1333 305 242 14 41 chr11 98141131 98141226 -23702630 + ID4 SINE ID 10 99 -53 4 1333 1237 41 0 7 chr11 98141393 98141540 -23702316 - B1_Mus1 SINE Alu -2 146 1 4 1333 243 88 0 0 chr11 98141540 98141574 -23702282 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1333 226 306 111 0 chr11 98141676 98141784 -23702072 - L1MD LINE L1 -345 5897 5778 4 1333 269 223 0 0 chr11 98141923 98141986 -23701870 - L1M5 LINE L1 -503 5788 5726 4 1333 1008 62 62 0 chr11 98142025 98142154 -23701702 - B1_Mus2 SINE Alu -10 137 1 4 1333 699 202 0 53 chr11 98142235 98142366 -23701490 - B1_Mur1 SINE Alu -23 126 3 4 1333 977 145 40 61 chr11 98142461 98142499 -23701357 - B2_Mm2 SINE B2 0 195 159 4 1333 1122 82 0 0 chr11 98142499 98142646 -23701210 - B1_Mus1 SINE Alu -1 147 1 4 1333 887 150 71 16 chr11 98142647 98142830 -23701026 - B2_Mm2 SINE B2 -2 193 1 4 1333 977 145 40 61 chr11 98142830 98142987 -23700869 - B2_Mm2 SINE B2 -37 158 2 4 1333 1274 71 6 0 chr11 98143005 98143173 -23700683 - B2_Mm1a SINE B2 -23 170 2 4 1333 335 255 109 17 chr11 98143175 98143325 -23700531 - MIRc SINE MIR -49 219 51 4 1333 1071 82 20 7 chr11 98143979 98144126 -23699730 + B1_Mur4 SINE Alu 2 150 0 4 1333 217 283 17 0 chr11 98144608 98144668 -23699188 + CT-rich Low_complexity Low_complexity 1 61 0 4 1333 215 302 0 0 chr11 98144931 98144984 -23698872 + CT-rich Low_complexity Low_complexity 2 54 0 4 1333 213 222 19 0 chr11 98145220 98145274 -23698582 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1333 714 136 0 0 chr11 98145413 98145531 -23698325 + (TCCC)n Simple_repeat Simple_repeat 3 120 0 4 1333 209 273 0 0 chr11 98145862 98145906 -23697950 + polypurine Low_complexity Low_complexity 2 45 0 4 1333 688 155 8 8 chr11 98146166 98146283 -23697573 + B1_Mur3 SINE Alu 2 118 -31 4 1333 663 139 23 0 chr11 98146440 98146569 -23697287 + CT-rich Low_complexity Low_complexity 1 132 0 4 1333 381 43 0 0 chr11 98146752 98146799 -23697057 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1333 216 184 0 0 chr11 98147425 98147474 -23696382 + (CCG)n Simple_repeat Simple_repeat 3 51 0 4 1333 944 126 14 7 chr11 98147518 98147662 -23696194 - B1_Mur3 SINE Alu 0 149 5 4 1333 525 292 7 0 chr11 98147892 98148029 -23695827 + B1F1 SINE Alu 5 142 -7 4 1333 21 0 0 31 chr11 98148198 98148214 -23695642 + AT_rich Low_complexity Low_complexity 1 16 0 4 1333 1029 104 147 0 chr11 98148214 98148377 -23695479 - B2_Mm2 SINE B2 -8 187 1 4 1333 21 0 0 31 chr11 98148377 98148392 -23695464 + AT_rich Low_complexity Low_complexity 1 15 0 4 1333 914 117 27 33 chr11 98148618 98148768 -23695088 - B1_Mur3 SINE Alu 0 149 1 4 1333 199 242 14 57 chr11 98149446 98149516 -23694340 - MIRb SINE MIR -3 265 199 4 1333 717 257 0 66 chr11 98149782 98149978 -23693878 - B3A SINE B2 -14 184 2 4 1333 348 313 25 0 chr11 98150022 98150123 -23693733 + L2b LINE L2 3294 3424 -2 4 1333 349 256 47 47 chr11 98152941 98153068 -23690788 + MIR3 SINE MIR 81 207 -1 4 1333 4812 47 14 3 chr11 98153272 98153853 -23690003 - LTRIS_Mus LTR ERV1 0 587 1 4 1333 637 231 158 12 chr11 98153972 98154143 -23689713 + B3A SINE B2 2 197 -1 4 1333 226 300 29 0 chr11 98154160 98154230 -23689626 - ID4 SINE ID -9 74 3 4 1333 1154 78 145 0 chr11 98154370 98154536 -23689320 + B2_Mm2 SINE B2 5 194 -1 4 1333 223 317 53 75 chr11 98154595 98154728 -23689128 - MIRb SINE MIR -129 139 3 4 1333 187 302 31 16 chr11 98154995 98155059 -23688797 - L3b LINE CR1 -2 480 416 4 1333 569 230 55 16 chr11 98155311 98155439 -23688417 - B1_Mur2 SINE Alu -16 133 1 4 1333 208 264 96 43 chr11 98155647 98155780 -23688076 + L2c LINE L2 3267 3421 -5 4 1333 204 111 0 0 chr11 98155995 98156031 -23687825 + (CCG)n Simple_repeat Simple_repeat 1 36 0 4 1333 197 248 99 54 chr11 98156558 98156669 -23687187 + MIRc SINE MIR 30 145 -123 4 1333 288 0 0 0 chr11 98156919 98156951 -23686905 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1333 236 170 19 0 chr11 98158643 98158696 -23685160 + CT-rich Low_complexity Low_complexity 2 55 0 4 1333 504 296 37 30 chr11 98159186 98159432 -23684424 - MIRb SINE MIR -9 259 10 4 1333 209 147 24 42 chr11 98160570 98160617 -23683239 - MIR SINE MIR -114 154 106 4 1333 249 276 93 28 chr11 98160617 98160725 -23683131 + MIRb SINE MIR 39 153 -115 4 1333 906 176 0 7 chr11 98160940 98161083 -23682773 - B1_Mur3 SINE Alu -5 144 3 4 1333 395 230 162 16 chr11 98161100 98161233 -23682623 - MIRb SINE MIR -106 162 19 4 1333 578 281 39 19 chr11 98161241 98161419 -23682437 - ID_B1 SINE B4 -27 265 86 4 1333 416 237 13 0 chr11 98161430 98161506 -23682350 - PB1D7 SINE Alu -10 110 34 4 1333 250 376 30 0 chr11 98161519 98161620 -23682236 - L2c LINE L2 -259 3128 3025 4 1333 319 298 37 25 chr11 98161870 98162011 -23681845 - MIRc SINE MIR -84 184 41 5 1333 603 281 0 0 chr11 98162082 98162221 -23681635 + ID_B1 SINE B4 86 224 0 5 1333 184 238 0 23 chr11 98162312 98162355 -23681501 - MIRm SINE MIR -123 153 112 5 1333 970 72 58 0 chr11 98162395 98162534 -23681322 - B1_Mus1 SINE Alu 0 148 2 5 1333 236 149 65 73 chr11 98163159 98163282 -23680574 + (AGGTG)n Simple_repeat Simple_repeat 3 124 0 5 1333 238 211 50 50 chr11 98163699 98163779 -23680077 + RSINE1 SINE B4 47 126 -39 5 1333 495 0 0 0 chr11 98163812 98163867 -23679989 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1333 387 306 0 20 chr11 98163980 98164072 -23679784 - PB1D10 SINE Alu -4 113 24 5 1333 678 262 40 35 chr11 98164072 98164246 -23679610 + B3A SINE B2 2 176 -22 5 1333 513 47 0 0 chr11 98164262 98164326 -23679530 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1333 384 22 0 0 chr11 98164430 98164475 -23679381 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1333 795 182 0 21 chr11 98164517 98164657 -23679199 + B1_Mur1 SINE Alu 2 138 -11 5 1333 1002 85 56 7 chr11 98164736 98164878 -23678978 + B1_Mur4 SINE Alu 1 149 -1 5 1333 252 270 95 0 chr11 98164889 98164963 -23678893 + PB1D7 SINE Alu 39 119 -1 5 1333 266 186 65 48 chr11 98165033 98165095 -23678761 + MIR SINE MIR 110 172 -90 5 1333 3056 38 61 8 chr11 98165200 98165576 -23678280 + MTA_Mm LTR MaLR 1 396 0 5 1333 225 64 41 41 chr11 98165970 98166019 -23677837 + (TGGGGG)n Simple_repeat Simple_repeat 3 51 0 5 1333 297 223 65 37 chr11 98166531 98166638 -23677218 + PB1D7 SINE Alu 9 118 -2 5 1333 735 183 0 0 chr11 98166778 98166958 -23676898 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1333 326 267 50 50 chr11 98166968 98167100 -23676756 - B3A SINE B2 -2 196 65 5 1333 1388 73 11 0 chr11 98167101 98167278 -23676578 + B2_Mm1t SINE B2 1 179 -14 5 1333 354 127 0 0 chr11 98167325 98167380 -23676476 + B2_Mm2 SINE B2 47 101 -94 5 1333 22 35 0 0 chr11 98167389 98167418 -23676438 + AT_rich Low_complexity Low_complexity 1 29 0 5 1333 260 154 135 0 chr11 98167422 98167474 -23676382 - B3A SINE B2 -124 74 16 5 1333 503 301 82 0 chr11 98167520 98167666 -23676190 - RSINE1 SINE B4 -6 159 2 5 1333 270 0 0 0 chr11 98167762 98167792 -23676064 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1333 767 146 65 0 chr11 98167792 98167915 -23675941 - B1_Mus2 SINE Alu -12 135 5 5 1333 350 42 21 0 chr11 98167917 98167965 -23675891 + (CAT)n Simple_repeat Simple_repeat 2 50 0 5 1333 247 302 186 47 chr11 98167965 98168201 -23675655 - L2 LINE L2 -619 2800 2532 5 1333 227 336 12 88 chr11 98168377 98168537 -23675319 + RLTR1 LTR ERV1 125 272 -352 5 1333 360 0 0 0 chr11 98169152 98169192 -23674664 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1333 616 272 33 13 chr11 98169197 98169350 -23674506 - B3A SINE B2 -38 160 5 5 1333 488 152 99 20 chr11 98169373 98169474 -23674382 - B1_Mus2 SINE Alu 0 147 39 5 1333 234 324 97 18 chr11 98169418 98169531 -23674325 - MT2B LTR ERVL -343 258 137 5 1333 304 301 10 12 chr11 98169522 98169614 -23674242 + PB1D7 SINE Alu 18 116 -4 5 1333 212 262 113 16 chr11 98169641 98169703 -23674153 + RSINE1 SINE B4 13 80 -85 5 1333 255 280 40 0 chr11 98169839 98169914 -23673942 + RSINE1 SINE B4 88 165 0 5 1333 222 231 0 0 chr11 98169924 98169989 -23673867 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1333 501 284 5 0 chr11 98170035 98170491 -23673365 + (CA)n Simple_repeat Simple_repeat 1 458 0 5 1333 249 336 58 66 chr11 98170638 98170775 -23673081 - L2 LINE L2 -832 2587 2452 5 1333 1251 166 5 5 chr11 98171098 98171304 -23672552 + B3 SINE B2 2 207 -9 5 1333 841 192 62 0 chr11 98171372 98171533 -23672323 + B3 SINE B2 40 210 -6 5 1333 359 120 361 0 chr11 98171627 98171735 -23672121 + B2_Mm2 SINE B2 47 193 -2 5 1333 865 249 9 49 chr11 98171760 98171984 -23671872 + MTD LTR MaLR 1 215 -206 5 1333 754 175 0 28 chr11 98171983 98172124 -23671732 + B1_Mur2 SINE Alu 11 147 -2 5 1333 228 135 0 0 chr11 98172141 98172178 -23671678 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1333 1187 159 23 18 chr11 98172178 98172396 -23671460 + MTD LTR MaLR 196 414 -5 5 1333 907 116 80 0 chr11 98172397 98172535 -23671321 + B1_Mur4 SINE Alu 1 149 -1 5 1334 585 294 63 0 chr11 98173011 98173154 -23670702 - RSINE1 SINE B4 -12 153 2 5 1334 366 23 0 0 chr11 98173158 98173201 -23670655 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1334 278 325 8 82 chr11 98173247 98173381 -23670475 - RSINE1 SINE B4 -33 132 9 5 1334 646 290 96 27 chr11 98173377 98173597 -23670259 - B4A SINE B4 -52 240 6 5 1334 2370 63 79 0 chr11 98173599 98173902 -23669954 - ORR1A2 LTR MaLR 0 327 1 5 1334 679 232 42 7 chr11 98173937 98174072 -23669784 + B1_Mur2 SINE Alu 2 141 -8 5 1334 333 47 0 0 chr11 98174072 98174115 -23669741 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 5 1334 1169 63 7 0 chr11 98174502 98174644 -23669212 + B1_Mus2 SINE Alu 5 147 0 5 1334 894 116 0 0 chr11 98174648 98174875 -23668981 + (GA)n Simple_repeat Simple_repeat 1 227 0 5 1334 21 0 0 0 chr11 98175467 98175488 -23668368 + GC_rich Low_complexity Low_complexity 1 21 0 5 1334 230 303 152 0 chr11 98176033 98176099 -23667757 - ID4_ SINE ID -5 78 3 5 1334 361 296 62 110 chr11 98176169 98176210 -23667646 - B4A SINE B4 -28 264 223 5 1334 360 0 0 0 chr11 98176210 98176250 -23667606 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1334 970 48 0 0 chr11 98176252 98176376 -23667480 - B1_Mus1 SINE Alu -6 142 19 5 1334 387 214 16 111 chr11 98176281 98176407 -23667449 - MT2B LTR ERVL -337 264 151 5 1334 361 296 62 110 chr11 98176376 98176417 -23667439 - B4A SINE B4 -70 220 66 5 1334 200 31 62 0 chr11 98176723 98176755 -23667101 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1334 317 244 47 94 chr11 98176757 98176884 -23666972 - PB1 SINE Alu -2 125 5 5 1334 422 286 0 76 chr11 98176896 98177040 -23666816 - ID_B1 SINE B4 -2 222 90 5 1334 237 207 12 24 chr11 98178711 98178795 -23665061 + GA-rich Low_complexity Low_complexity 5 87 0 5 1334 453 19 0 0 chr11 98179521 98179575 -23664281 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1334 198 193 0 0 chr11 98180771 98180828 -23663028 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 5 1334 189 107 0 0 chr11 98181994 98182022 -23661834 + (TTC)n Simple_repeat Simple_repeat 1 28 0 5 1334 237 33 0 0 chr11 98182156 98182186 -23661670 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1334 633 27 0 0 chr11 98183334 98183409 -23660447 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1334 189 0 0 0 chr11 98183519 98183540 -23660316 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1334 208 128 0 49 chr11 98184006 98184047 -23659809 + T-rich Low_complexity Low_complexity 2 40 0 5 1334 189 0 0 0 chr11 98186230 98186251 -23657605 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 1334 297 68 0 0 chr11 98186532 98186576 -23657280 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1334 243 215 0 25 chr11 98187023 98187104 -23656752 + A-rich Low_complexity Low_complexity 3 81 0 5 1334 466 133 22 0 chr11 98187284 98187374 -23656482 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1334 22 35 0 0 chr11 98187547 98187576 -23656280 + GC_rich Low_complexity Low_complexity 1 29 0 5 1334 23 68 0 0 chr11 98187689 98187733 -23656123 + AT_rich Low_complexity Low_complexity 1 44 0 5 1334 231 215 0 0 chr11 98187814 98187879 -23655977 + T-rich Low_complexity Low_complexity 1 65 0 5 1334 240 35 0 0 chr11 98189375 98189404 -23654452 + (TCC)n Simple_repeat Simple_repeat 2 30 0 5 1334 30 27 0 0 chr11 98190155 98190192 -23653664 + GC_rich Low_complexity Low_complexity 1 37 0 5 1334 184 212 15 15 chr11 98190751 98190818 -23653038 + GA-rich Low_complexity Low_complexity 2 68 0 5 1334 211 136 0 22 chr11 98191091 98191136 -23652720 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 5 1334 309 26 0 0 chr11 98191675 98191713 -23652143 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1334 180 111 0 0 chr11 98191874 98191901 -23651955 + (TCC)n Simple_repeat Simple_repeat 3 29 0 5 1334 662 96 0 9 chr11 98193077 98193182 -23650674 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 1334 589 184 127 8 chr11 98193238 98193364 -23650492 - B1_Mur2 SINE Alu 0 149 9 5 1334 349 244 39 0 chr11 98193390 98193468 -23650388 + ID2 SINE ID 3 83 0 5 1334 786 163 155 12 chr11 98193631 98193799 -23650057 - B2_Mm2 SINE B2 -2 193 2 5 1334 757 107 0 24 chr11 98193879 98194003 -23649853 + B1_Mur4 SINE Alu 30 150 0 5 1334 220 214 0 0 chr11 98194105 98194147 -23649709 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 5 1334 271 197 164 0 chr11 98196514 98196575 -23647281 + ID SINE ID 5 75 -149 5 1334 931 101 31 0 chr11 98196936 98197065 -23646791 - B1_Mur4 SINE Alu -15 135 3 5 1334 188 300 73 24 chr11 98197476 98197558 -23646298 + L2b LINE L2 3114 3199 -176 5 1334 195 374 18 61 chr11 98197696 98197810 -23646046 + MIRb SINE MIR 123 231 -37 5 1334 202 292 138 0 chr11 98198035 98198100 -23645756 + MIRc SINE MIR 92 165 -103 5 1334 194 331 46 80 chr11 98198216 98198367 -23645489 + MIRm SINE MIR 115 260 -16 5 1334 265 290 0 0 chr11 98198601 98198670 -23645186 + CT-rich Low_complexity Low_complexity 2 70 0 5 1334 221 330 37 83 chr11 98198794 98198903 -23644953 - MIRm SINE MIR -125 151 48 5 1334 510 178 83 18 chr11 98198903 98199012 -23644844 + PB1D7 SINE Alu 2 117 -3 5 1334 360 0 0 0 chr11 98199082 98199122 -23644734 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1334 654 225 7 27 chr11 98199130 98199276 -23644580 - RSINE1 SINE B4 -20 145 3 5 1334 185 233 145 32 chr11 98199579 98199641 -23644215 + L2b LINE L2 3097 3165 -210 6 1334 41 103 0 0 chr11 98200242 98200388 -23643468 + GC_rich Low_complexity Low_complexity 1 146 0 6 1334 209 247 21 10 chr11 98201598 98201660 -23642196 - MIR SINE MIR -116 152 92 6 1334 387 0 0 0 chr11 98201692 98201735 -23642121 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1334 282 356 18 12 chr11 98201784 98201909 -23641947 - MIR SINE MIR -58 210 81 6 1334 1306 95 26 21 chr11 98202268 98202461 -23641395 + B2_Mm2 SINE B2 1 194 -1 6 1334 495 0 0 0 chr11 98202472 98202527 -23641329 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1334 308 337 96 21 chr11 98202783 98202971 -23640885 - MIRb SINE MIR -17 251 50 6 1334 356 224 35 12 chr11 98204290 98204376 -23639480 + B1F1 SINE Alu 61 148 -1 6 1334 263 260 164 0 chr11 98204518 98204591 -23639265 - B1F SINE Alu -58 91 7 6 1334 321 236 219 8 chr11 98204631 98204759 -23639097 + MIRb SINE MIR 104 258 -10 6 1334 267 93 0 0 chr11 98204763 98204806 -23639050 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1334 651 204 65 14 chr11 98204973 98205112 -23638744 + B3 SINE B2 3 148 -68 6 1334 384 22 0 0 chr11 98205128 98205173 -23638683 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1334 426 211 182 40 chr11 98205180 98205328 -23638528 + B3 SINE B2 48 216 0 6 1334 872 166 14 7 chr11 98205441 98205587 -23638269 + B1F2 SINE Alu 1 147 -2 6 1334 226 222 0 0 chr11 98205590 98205635 -23638221 + B3A SINE B2 2 46 -152 6 1334 923 155 7 13 chr11 98205635 98205785 -23638071 + B1_Mur3 SINE Alu 1 149 0 6 1334 478 257 98 7 chr11 98205804 98205957 -23637899 + B3A SINE B2 32 198 0 6 1334 1356 85 11 0 chr11 98205963 98206139 -23637717 + B2_Mm1t SINE B2 2 179 -14 6 1334 340 117 316 26 chr11 98206181 98206295 -23637561 + B2_Mm2 SINE B2 47 193 -2 6 1334 951 127 0 0 chr11 98207163 98207313 -23636543 + (GAA)n Simple_repeat Simple_repeat 1 150 0 6 1334 540 0 0 0 chr11 98208615 98208675 -23635181 + (TC)n Simple_repeat Simple_repeat 2 61 0 6 1334 279 0 0 0 chr11 98209061 98209092 -23634764 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1334 310 308 43 57 chr11 98211621 98211762 -23632094 + MIR3 SINE MIR 30 168 -40 6 1334 410 291 108 69 chr11 98213096 98213162 -23630694 + ID_B1 SINE B4 13 223 -1 6 1334 487 237 51 44 chr11 98213162 98213299 -23630557 + B1_Mus1 SINE Alu 11 148 0 6 1334 257 298 149 0 chr11 98213296 98213437 -23630419 + B4 SINE B4 43 204 -88 6 1334 497 289 36 15 chr11 98213336 98213473 -23630383 + B1F1 SINE Alu 10 149 0 6 1334 611 295 65 16 chr11 98214121 98214307 -23629549 + ID_B1 SINE B4 25 219 -5 6 1334 324 203 47 0 chr11 98214372 98214436 -23629420 - tRNA-Ala-GCY_ tRNA tRNA -4 71 5 6 1334 1069 83 0 20 chr11 98214638 98214785 -23629071 - B1_Mus1 SINE Alu 0 148 5 6 1334 356 274 22 88 chr11 98215625 98215761 -23628095 - ID_B1 SINE B4 -4 220 94 6 1334 192 184 0 0 chr11 98216736 98216785 -23627071 + GA-rich Low_complexity Low_complexity 3 51 0 6 1334 21 0 0 0 chr11 98217489 98217510 -23626346 + AT_rich Low_complexity Low_complexity 1 21 0 6 1334 445 286 7 79 chr11 98217770 98217922 -23625934 - B1F SINE Alu -8 141 1 6 1334 225 239 0 0 chr11 98219334 98219380 -23624476 + PB1D10 SINE Alu 5 50 -67 6 1334 244 267 85 5 chr11 98221123 98221228 -23622628 + MIR SINE MIR 87 205 -63 6 1334 625 143 161 0 chr11 98221542 98221654 -23622202 + B1_Mus1 SINE Alu 8 137 -11 6 1334 234 0 0 0 chr11 98221656 98221682 -23622174 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1334 181 295 131 0 chr11 98222163 98222224 -23621632 - MIRm SINE MIR -124 152 84 6 1334 249 297 86 43 chr11 98223118 98223280 -23620576 - MIRb SINE MIR -76 192 24 6 1334 466 291 230 8 chr11 98224025 98224417 -23619439 - L2 LINE L2 -359 3060 2582 6 1334 1365 96 0 26 chr11 98225045 98225238 -23618618 - B2_Mm2 SINE B2 -6 189 2 6 1334 423 0 0 0 chr11 98226106 98226153 -23617703 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1334 509 249 18 167 chr11 98226162 98226265 -23617591 + B3A SINE B2 3 91 -107 6 1334 1127 62 7 14 chr11 98226265 98226411 -23617445 + B1_Mus2 SINE Alu 3 147 0 6 1334 509 249 18 167 chr11 98226411 98226529 -23617327 + B3A SINE B2 92 191 -7 6 1334 928 86 14 0 chr11 98226568 98226708 -23617148 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 6 1334 1017 92 8 0 chr11 98226712 98226843 -23617013 - B1_Mus1 SINE Alu -16 132 1 6 1334 1178 69 7 0 chr11 98226873 98227018 -23616838 + B1_Mm SINE Alu 2 147 0 6 1334 761 250 0 23 chr11 98227037 98227209 -23616647 + B3 SINE B2 48 215 -1 6 1334 682 296 76 19 chr11 98227232 98227442 -23616414 + ID_B1 SINE B4 2 223 -1 6 1334 258 156 0 0 chr11 98228444 98228489 -23615367 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 6 1334 313 303 139 0 chr11 98229014 98229136 -23614720 + L1MC LINE L1 5503 5641 -2241 6 1334 274 246 43 0 chr11 98229255 98229324 -23614532 + ID4 SINE ID 2 73 -10 6 1334 269 185 121 39 chr11 98229367 98229475 -23614381 + PB1D7 SINE Alu 10 120 0 6 1334 680 190 0 0 chr11 98229497 98229613 -23614243 + B1_Mus1 SINE Alu 33 148 0 6 1334 1632 16 0 35 chr11 98229648 98229845 -23614011 + B2_Mm1a SINE B2 2 191 -2 6 1334 448 212 0 10 chr11 98229953 98230053 -23613803 + ID_B1 SINE B4 125 223 -1 6 1334 713 253 7 14 chr11 98230055 98230203 -23613653 + RSINE1 SINE B4 3 149 -16 6 1334 328 164 0 0 chr11 98230250 98230305 -23613551 + B3 SINE B2 8 62 -154 6 1334 619 170 42 49 chr11 98230314 98230456 -23613400 + B1_Mur2 SINE Alu 9 149 0 6 1334 807 192 64 6 chr11 98230453 98230610 -23613246 + B3 SINE B2 48 213 -3 6 1334 606 277 175 24 chr11 98230636 98230976 -23612880 + MLT1C LTR MaLR 35 387 -80 6 1334 287 296 0 24 chr11 98231009 98231092 -23612764 - ID4_ SINE ID -1 82 2 6 1334 274 261 193 0 chr11 98231146 98231234 -23612622 - PB1D10 SINE Alu -12 105 1 6 1334 386 233 404 24 chr11 98231244 98231395 -23612461 + ID_B1 SINE B4 15 222 -2 6 1334 620 136 48 48 chr11 98231892 98232016 -23611840 + BC1_Mm scRNA scRNA 2 125 -27 6 1334 342 277 83 83 chr11 98232510 98232715 -23611141 - L2b LINE L2 0 3375 3171 6 1334 279 0 0 0 chr11 98233214 98233245 -23610611 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1334 226 235 0 0 chr11 98234016 98234067 -23609789 - L2c LINE L2 0 3387 3337 6 1334 376 316 32 19 chr11 98234561 98234716 -23609140 - ORSL-2b DNA Tip100 -14 494 338 6 1334 409 76 0 29 chr11 98234950 98235018 -23608838 + (GGAGA)n Simple_repeat Simple_repeat 1 66 0 6 1334 928 154 11 0 chr11 98235028 98235203 -23608653 + (TG)n Simple_repeat Simple_repeat 2 178 0 6 1334 495 279 66 0 chr11 98235411 98235547 -23608309 + B1F2 SINE Alu 1 145 -4 6 1334 560 113 71 10 chr11 98237304 98237402 -23606454 - B1F2 SINE Alu -8 141 38 6 1334 610 224 49 0 chr11 98237453 98237596 -23606260 - ID_B1 SINE B4 -65 159 10 6 1334 688 246 14 14 chr11 98242423 98242571 -23601285 + B1_Mur1 SINE Alu 2 149 0 6 1334 311 232 0 102 chr11 98242652 98242849 -23601007 + (CCCA)n Simple_repeat Simple_repeat 2 178 0 6 1334 229 274 258 0 chr11 98243286 98243410 -23600446 + MIRc SINE MIR 21 179 -89 6 1334 32 0 0 0 chr11 98243574 98243606 -23600250 + GC_rich Low_complexity Low_complexity 1 32 0 6 1334 804 50 0 0 chr11 98243717 98243818 -23600038 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 1334 1082 72 153 18 chr11 98243904 98244074 -23599782 + B2_Mm2 SINE B2 1 193 -2 6 1334 195 42 0 0 chr11 98244074 98244098 -23599758 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 6 1334 926 133 0 32 chr11 98244113 98244299 -23599557 + GA-rich Low_complexity Low_complexity 1 180 0 6 1334 328 270 20 10 chr11 98248252 98248353 -23595503 + PB1 SINE Alu 14 115 -12 6 1334 212 197 29 29 chr11 98248377 98248445 -23595411 + GA-rich Low_complexity Low_complexity 1 68 0 6 1334 275 305 114 41 chr11 98255061 98255184 -23588672 + MIRm SINE MIR 4 135 -141 6 1334 279 297 43 21 chr11 98256224 98256317 -23587539 - L3b LINE CR1 -189 293 199 6 1334 276 271 0 0 chr11 98256823 98256893 -23586963 + PB1D10 SINE Alu 48 117 0 6 1334 1312 36 91 0 chr11 98256904 98257069 -23586787 + B2_Mm2 SINE B2 2 181 -14 6 1334 1618 37 11 0 chr11 98257072 98257261 -23586595 + B2_Mm1a SINE B2 3 193 0 6 1334 406 298 70 0 chr11 98257726 98257840 -23586016 - B1F SINE Alu -19 130 9 6 1334 212 310 0 0 chr11 98257793 98257851 -23586005 - ID_B1 SINE B4 -88 136 79 6 1334 396 288 34 61 chr11 98257864 98258012 -23585844 - B1F SINE Alu -5 144 1 6 1334 275 268 35 47 chr11 98258506 98258592 -23585264 + L2b LINE L2 3271 3355 -20 6 1334 605 231 112 0 chr11 98259870 98260004 -23583852 - B1_Mur2 SINE Alu 0 149 1 6 1334 390 42 0 0 chr11 98260461 98260509 -23583347 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1334 449 242 84 32 chr11 98260862 98261016 -23582840 + MIRb SINE MIR 34 195 -73 6 1334 217 378 83 6 chr11 98261993 98262150 -23581706 + L2 LINE L2 2604 2772 -647 6 1334 1366 196 182 17 chr11 98262161 98262508 -23581348 - MTD LTR MaLR -2 417 14 6 1334 532 194 8 8 chr11 98262887 98263012 -23580844 + CT-rich Low_complexity Low_complexity 3 127 0 6 1334 251 246 14 42 chr11 98263074 98263146 -23580710 + RSINE1 SINE B4 56 125 -40 7 1334 390 21 0 0 chr11 98263159 98263206 -23580650 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1334 586 337 12 0 chr11 98263216 98263385 -23580471 + B3A SINE B2 1 171 -27 7 1334 423 267 10 0 chr11 98263772 98263873 -23579983 - PB1D10 SINE Alu -5 112 11 7 1334 289 361 0 40 chr11 98263870 98263907 -23579949 + B4 SINE B4 53 85 -207 7 1334 371 247 0 0 chr11 98263907 98263984 -23579872 + B1_Mur3 SINE Alu 1 77 -72 7 1334 288 0 0 0 chr11 98263986 98264018 -23579838 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1334 444 241 35 14 chr11 98264181 98264342 -23579514 + MER57A-int LTR ERV1 5808 5949 -238 7 1334 517 225 68 30 chr11 98264748 98264881 -23578975 - RSINE1 SINE B4 -20 145 8 7 1334 1578 16 0 0 chr11 98265537 98265795 -23578061 + (TTC)n Simple_repeat Simple_repeat 1 258 0 7 1334 1050 90 0 0 chr11 98265797 98265930 -23577926 - B1_Mus2 SINE Alu -14 133 1 7 1334 751 197 6 58 chr11 98266446 98266602 -23577254 + B1_Mur1 SINE Alu 2 149 0 7 1334 1121 89 6 0 chr11 98266787 98266945 -23576911 + B2_Mm1a SINE B2 2 160 -33 7 1334 288 0 0 0 chr11 98266945 98266977 -23576879 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 7 1334 418 211 21 0 chr11 98267100 98267195 -23576661 + B1F1 SINE Alu 53 149 0 7 1334 29 60 0 0 chr11 98267195 98267245 -23576611 + AT_rich Low_complexity Low_complexity 1 50 0 7 1334 445 176 67 29 chr11 98267336 98267441 -23576415 - B1_Mur1 SINE Alu -5 144 36 7 1334 25 31 0 0 chr11 98267486 98267518 -23576338 + AT_rich Low_complexity Low_complexity 1 32 0 7 1334 1023 153 199 0 chr11 98267541 98267717 -23576139 + B3 SINE B2 1 211 -5 7 1334 200 212 45 0 chr11 98267735 98267801 -23576055 + A-rich Low_complexity Low_complexity 2 70 0 7 1334 188 67 0 32 chr11 98267818 98267849 -23576007 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 7 1334 198 0 0 0 chr11 98267961 98267983 -23575873 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 7 1334 291 342 58 27 chr11 98268150 98268396 -23575460 + L2a LINE L2 2993 3253 -122 7 1334 359 247 31 10 chr11 98268471 98268569 -23575287 + B1F SINE Alu 42 141 -8 7 1334 350 278 36 0 chr11 98268572 98268714 -23575142 + ID2 SINE ID 1 148 -4 7 1334 323 324 117 0 chr11 98268982 98269093 -23574763 + PB1 SINE Alu 1 124 -3 7 1334 1179 61 0 7 chr11 98269397 98269545 -23574311 - B1_Mus2 SINE Alu 0 147 1 7 1334 533 183 0 0 chr11 98269612 98269705 -23574151 + B1_Mur2 SINE Alu 57 149 0 7 1334 1294 103 16 5 chr11 98269721 98269906 -23573950 - B2_Mm1t SINE B2 -6 187 1 7 1334 1163 68 14 0 chr11 98269941 98270089 -23573767 - B1_Mur4 SINE Alu 0 150 1 7 1334 216 0 0 0 chr11 98270353 98270377 -23573479 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1334 279 0 0 0 chr11 98271066 98271097 -23572759 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1334 733 166 329 6 chr11 98271278 98271448 -23572408 + URR1B DNA MER1_type 1 225 0 7 1334 267 253 53 0 chr11 98271933 98272008 -23571848 - B1F SINE Alu -70 79 1 7 1334 229 95 79 0 chr11 98272108 98272171 -23571685 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1334 550 312 113 19 chr11 98272418 98272630 -23571226 - MIRb SINE MIR -12 256 25 7 1334 311 297 0 32 chr11 98272785 98272879 -23570977 + MER53 DNA hAT 6 96 -97 7 1334 823 184 33 99 chr11 98273060 98273271 -23570585 + B3A SINE B2 1 197 -1 7 1334 603 27 0 0 chr11 98274694 98274767 -23569089 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1334 236 181 0 191 chr11 98274770 98274859 -23568997 - ID4 SINE ID -10 73 2 7 1334 242 378 23 30 chr11 98275180 98275311 -23568545 - MIRb SINE MIR -36 232 103 7 1334 691 251 52 12 chr11 98276262 98276435 -23567421 + B3 SINE B2 36 215 -1 7 1334 486 0 0 0 chr11 98276641 98276695 -23567161 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1334 240 35 0 0 chr11 98277968 98277997 -23565859 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 7 1334 894 63 0 0 chr11 98278304 98278430 -23565426 + (TG)n Simple_repeat Simple_repeat 2 127 0 7 1334 490 211 26 3 chr11 98278704 98279016 -23564840 + (TG)n Simple_repeat Simple_repeat 1 319 0 7 1334 424 223 29 0 chr11 98279027 98279202 -23564654 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1334 223 268 84 0 chr11 98279208 98279279 -23564577 + MIRb SINE MIR 15 91 -177 7 1334 910 65 0 0 chr11 98279353 98279477 -23564379 - B1_Mus1 SINE Alu 0 148 25 7 1334 249 207 35 0 chr11 98279463 98279521 -23564335 - B4A SINE B4 -217 75 16 7 1334 248 229 0 26 chr11 98282568 98282640 -23561216 + ID4 SINE ID 13 80 -72 7 1334 403 239 27 18 chr11 98282876 98282987 -23560869 - PB1D7 SINE Alu 0 120 9 7 1334 276 240 73 46 chr11 98282897 98283006 -23560850 - ID_B1 SINE B4 -45 179 68 7 1334 321 337 25 0 chr11 98283670 98283833 -23560023 + CT-rich Low_complexity Low_complexity 2 168 0 7 1334 524 124 180 0 chr11 98284605 98284694 -23559162 - U6 snRNA snRNA -2 105 1 7 1334 963 183 11 11 chr11 98284722 98284899 -23558957 - B3 SINE B2 0 216 40 7 1334 207 0 0 0 chr11 98284924 98284947 -23558909 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 7 1334 494 174 33 0 chr11 98284950 98285042 -23558814 - B1F2 SINE Alu -13 136 42 7 1334 583 261 7 43 chr11 98285031 98285209 -23558647 - ID_B1 SINE B4 -43 249 76 7 1334 423 309 135 14 chr11 98285247 98285454 -23558402 + MIR SINE MIR 20 251 -11 7 1334 360 294 0 0 chr11 98285687 98285772 -23558084 + ID_B1 SINE B4 92 176 -48 7 1334 352 320 54 8 chr11 98285786 98285915 -23557941 + MIR SINE MIR 57 191 -71 7 1334 698 198 20 10 chr11 98286830 98287016 -23556840 - B3 SINE B2 -5 190 2 7 1334 225 0 0 0 chr11 98287103 98287128 -23556728 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 7 1334 272 250 0 22 chr11 98287138 98287228 -23556628 + (TCTCTG)n Simple_repeat Simple_repeat 6 93 0 7 1334 785 269 5 21 chr11 98287229 98287419 -23556437 - B4 SINE B4 0 292 106 7 1334 402 173 0 0 chr11 98287447 98287522 -23556334 + CT-rich Low_complexity Low_complexity 1 75 0 7 1334 470 255 94 87 chr11 98287522 98287553 -23556303 - B4 SINE B4 -46 246 190 7 1334 707 113 47 0 chr11 98287553 98287659 -23556197 - B1_Mus1 SINE Alu -14 134 24 7 1334 470 255 94 87 chr11 98287659 98287750 -23556106 - B4 SINE B4 -46 189 15 7 1334 189 264 27 27 chr11 98287767 98287841 -23556015 + MIR SINE MIR 108 181 -81 7 1334 1118 102 0 0 chr11 98288868 98289015 -23554841 - B1_Mur2 SINE Alu -2 147 1 7 1334 270 348 81 7 chr11 98289824 98289960 -23553896 + MIR SINE MIR 117 262 0 7 1334 1376 97 16 0 chr11 98290415 98290600 -23553256 - B2_Mm2 SINE B2 -5 190 3 7 1334 322 281 88 82 chr11 98290649 98290797 -23553059 + B2_Mm2 SINE B2 1 149 -46 7 1334 251 28 28 0 chr11 98290797 98290833 -23553023 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1334 322 281 88 82 chr11 98290833 98290866 -23552990 + B2_Mm2 SINE B2 150 182 -13 7 1334 660 267 0 0 chr11 98290869 98291004 -23552852 + RSINE1 SINE B4 14 148 -17 7 1334 641 242 8 0 chr11 98291192 98291316 -23552540 - RSINE1 SINE B4 -36 129 5 7 1334 651 26 0 0 chr11 98291346 98291423 -23552433 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 1334 1743 233 15 20 chr11 98291423 98291821 -23552035 - MTD LTR MaLR -11 408 13 7 1334 825 169 89 11 chr11 98291826 98292005 -23551851 - B3 SINE B2 -22 194 2 7 1334 247 245 0 0 chr11 98292006 98292055 -23551801 + C-rich Low_complexity Low_complexity 3 51 0 7 1334 652 128 179 0 chr11 98292057 98292174 -23551682 - B1_Mus1 SINE Alu -10 138 1 7 1334 751 231 54 21 chr11 98292352 98292538 -23551318 - Lx5 LINE L1 -6 7044 6853 7 1334 423 265 20 11 chr11 98293745 98293855 -23550001 + PB1D10 SINE Alu 6 127 0 7 1334 205 186 0 0 chr11 98298425 98298468 -23545388 + T-rich Low_complexity Low_complexity 1 43 0 7 1334 353 254 67 76 chr11 98300769 98300888 -23542968 - RSINE1 SINE B4 -3 162 45 7 1334 411 269 182 48 chr11 98301183 98301608 -23542248 - L1MB8 LINE L1 -104 6058 5572 7 1334 185 0 0 39 chr11 98301608 98301634 -23542222 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1334 334 196 101 20 chr11 98301636 98301735 -23542121 - L1M4 LINE L1 -608 5575 5469 7 1334 377 91 308 60 chr11 98301739 98301856 -23542000 - B2_Mm2 SINE B2 -2 193 48 7 1334 1319 95 11 0 chr11 98301904 98302083 -23541773 - B2_Mm1t SINE B2 -11 182 2 7 1334 1069 78 14 0 chr11 98302167 98302309 -23541547 - B1_Mus1 SINE Alu 0 148 5 7 1334 331 210 20 10 chr11 98302323 98302424 -23541432 - L1M4 LINE L1 -827 5319 5218 7 1334 1211 68 0 0 chr11 98302499 98302645 -23541211 + B1_Mus2 SINE Alu 2 147 0 7 1334 644 154 26 59 chr11 98302675 98302827 -23541029 + B1_Mus1 SINE Alu 1 147 -1 7 1334 302 210 17 167 chr11 98302845 98302965 -23540891 - L1M4 LINE L1 -1053 5093 4992 7 1334 314 320 56 75 chr11 98302956 98302994 -23540862 - L1MC LINE L1 -1079 5067 5031 7 1334 810 203 7 20 chr11 98302994 98303145 -23540711 - B1_Mur4 SINE Alu -1 149 1 7 1334 314 320 56 75 chr11 98303145 98303165 -23540691 - L1MC LINE L1 -1116 5030 5007 7 1334 950 199 30 45 chr11 98303165 98303365 -23540491 - B3A SINE B2 -1 197 1 7 1334 314 320 56 75 chr11 98303365 98303478 -23540378 - L1MC LINE L1 -1140 5006 4894 7 1334 381 274 9 28 chr11 98303478 98303587 -23540269 + PB1D10 SINE Alu 4 110 -7 7 1334 314 320 56 75 chr11 98303587 98303626 -23540230 - L1MC LINE L1 -1253 4893 4860 7 1334 526 151 189 25 chr11 98303644 98303766 -23540090 + B1_Mur1 SINE Alu 8 149 0 7 1334 1163 69 7 0 chr11 98303772 98303916 -23539940 + B1_Mus2 SINE Alu 2 146 -1 7 1334 200 100 0 24 chr11 98303916 98303957 -23539899 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1335 457 230 127 0 chr11 98304182 98304308 -23539548 - RSINE1 SINE B4 -22 143 2 8 1335 348 284 100 9 chr11 98304327 98304437 -23539419 + B1F1 SINE Alu 10 129 -20 8 1335 958 220 4 74 chr11 98304467 98304698 -23539158 + B3 SINE B2 2 216 0 8 1335 925 182 0 7 chr11 98304775 98304924 -23538932 - B1_Mur4 SINE Alu -1 149 2 8 1335 1036 134 31 46 chr11 98304969 98305165 -23538691 - B2_Mm2 SINE B2 -2 193 1 8 1335 211 283 0 19 chr11 98305409 98305463 -23538393 + RSINE1 SINE B4 27 79 -86 8 1335 306 106 0 0 chr11 98305687 98305734 -23538122 + (TGGGGG)n Simple_repeat Simple_repeat 3 49 0 8 1335 1153 138 16 0 chr11 98305734 98305922 -23537934 + URR1B DNA MER1_type 35 225 0 8 1335 297 288 184 18 chr11 98305939 98306102 -23537754 + B2_Mm2 SINE B2 2 191 -4 8 1335 1209 55 0 18 chr11 98306106 98306272 -23537584 + B2_Mm2 SINE B2 2 164 -31 8 1335 666 68 0 0 chr11 98306279 98306367 -23537489 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 8 1335 784 122 6 149 chr11 98306370 98306544 -23537312 + B1_Mur3 SINE Alu 1 149 0 8 1335 347 149 14 0 chr11 98306547 98306621 -23537235 + GA-rich Low_complexity Low_complexity 2 76 0 8 1335 263 284 31 54 chr11 98306762 98306892 -23536964 - MER5A DNA MER1_type -3 186 60 8 1335 272 246 111 60 chr11 98307169 98307286 -23536570 + L2b LINE L2 3205 3327 -48 8 1335 356 310 58 17 chr11 98307399 98307430 -23536426 - B4A SINE B4 -38 254 146 8 1335 633 169 88 8 chr11 98307430 98307555 -23536301 - B1_Mur3 SINE Alu -7 142 8 8 1335 356 310 58 17 chr11 98307555 98307573 -23536283 - B4A SINE B4 -38 145 74 8 1335 204 40 0 0 chr11 98308204 98308229 -23535627 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1335 207 0 0 0 chr11 98308735 98308758 -23535098 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 8 1335 234 0 0 0 chr11 98308868 98308894 -23534962 + (GGATG)n Simple_repeat Simple_repeat 1 26 0 8 1335 318 26 0 0 chr11 98309569 98309608 -23534248 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1335 188 263 9 0 chr11 98313801 98313915 -23529941 + (TG)n Simple_repeat Simple_repeat 2 116 0 8 1335 456 223 0 0 chr11 98313954 98314129 -23529727 + (TG)n Simple_repeat Simple_repeat 2 176 0 8 1335 595 313 55 9 chr11 98314134 98314353 -23529503 - B4A SINE B4 0 292 64 8 1335 841 232 19 89 chr11 98316894 98317107 -23526749 - B3A SINE B2 0 198 1 8 1335 277 316 32 0 chr11 98317134 98317229 -23526627 + ID_B1 SINE B4 73 170 -54 8 1335 393 214 67 0 chr11 98317154 98317243 -23526613 + PB1D10 SINE Alu 12 106 -11 8 1335 269 292 102 19 chr11 98317993 98318101 -23525755 - MIR3 SINE MIR -18 190 74 8 1335 308 250 0 77 chr11 98318197 98318275 -23525581 + RSINE1 SINE B4 76 147 -18 8 1335 459 0 0 0 chr11 98318284 98318335 -23525521 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 8 1335 213 65 0 0 chr11 98319076 98319107 -23524749 + (C)n Simple_repeat Simple_repeat 1 31 0 8 1335 21 0 0 0 chr11 98319263 98319284 -23524572 + GC_rich Low_complexity Low_complexity 1 21 0 8 1335 577 262 109 22 chr11 98321421 98321604 -23522252 + RMER30 DNA MER1_type 2 200 -2 8 1335 209 171 0 0 chr11 98322663 98322698 -23521158 + C-rich Low_complexity Low_complexity 1 35 0 8 1335 181 292 26 53 chr11 98323351 98323427 -23520429 - MIRb SINE MIR -52 216 143 8 1335 549 0 0 0 chr11 98324174 98324235 -23519621 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 8 1335 519 45 0 0 chr11 98324539 98324605 -23519251 + (TGG)n Simple_repeat Simple_repeat 3 68 0 8 1335 772 91 40 28 chr11 98324605 98324937 -23518919 + (TG)n Simple_repeat Simple_repeat 1 336 0 8 1335 207 162 0 0 chr11 98325790 98325827 -23518029 + (CACG)n Simple_repeat Simple_repeat 3 39 0 8 1335 186 43 0 0 chr11 98326701 98326724 -23517132 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1335 274 274 96 8 chr11 98327039 98327164 -23516692 + B1_Mur4 SINE Alu 8 143 -7 8 1335 387 267 26 0 chr11 98327052 98327168 -23516688 + ID_B1 SINE B4 103 221 -3 8 1335 564 42 0 0 chr11 98330242 98330313 -23513543 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 8 1335 696 248 7 0 chr11 98330351 98330496 -23513360 - RSINE1 SINE B4 -16 149 4 8 1335 400 235 52 9 chr11 98330606 98330722 -23513134 + B1F SINE Alu 21 141 -8 8 1335 322 250 26 0 chr11 98330736 98330812 -23513044 + ID4 SINE ID 6 83 0 8 1335 1036 116 0 11 chr11 98332964 98333138 -23510718 + (GGGA)n Simple_repeat Simple_repeat 1 172 0 8 1335 247 188 21 0 chr11 98334403 98334451 -23509405 + CT-rich Low_complexity Low_complexity 4 52 0 8 1335 429 20 0 0 chr11 98334452 98334502 -23509354 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1335 571 233 39 39 chr11 98334532 98334688 -23509168 - B4A SINE B4 0 292 137 8 1335 236 222 219 14 chr11 98334782 98334855 -23509001 - B1_Mur1 SINE Alu -15 134 47 8 1335 432 37 0 0 chr11 98334945 98334999 -23508857 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1335 778 83 25 0 chr11 98334999 98335119 -23508737 - U2 snRNA snRNA -62 126 4 8 1335 242 208 302 0 chr11 98335126 98335154 -23508702 - ID_B1 SINE B4 0 224 100 8 1335 253 231 15 44 chr11 98335154 98335222 -23508634 - B1F2 SINE Alu -65 84 19 8 1335 186 43 0 0 chr11 98335230 98335253 -23508603 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 8 1335 608 36 0 12 chr11 98335841 98335924 -23507932 + L1Md_T LINE L1 6501 6582 0 8 1335 393 176 0 0 chr11 98336187 98336261 -23507595 + (CAG)n Simple_repeat Simple_repeat 1 74 0 8 1335 598 241 7 14 chr11 98336683 98336822 -23507034 - ID_B1 SINE B4 -1 223 86 8 1335 571 195 16 25 chr11 98336826 98336947 -23506909 - B1_Mur1 SINE Alu -18 131 12 8 1335 419 146 118 49 chr11 98337136 98337249 -23506607 + PB1D9 SINE Alu 1 120 0 8 1335 366 80 0 0 chr11 98337249 98337299 -23506557 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 8 1335 592 229 13 15 chr11 98339295 98339429 -23504427 + B1F SINE Alu 1 133 -16 8 1335 298 0 48 0 chr11 98339642 98339684 -23504172 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1335 884 241 127 0 chr11 98339904 98340149 -23503707 + B4A SINE B4 2 277 -15 8 1335 216 0 0 0 chr11 98340833 98340857 -23502999 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1335 405 0 0 0 chr11 98342936 98342981 -23500875 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 8 1335 528 227 141 0 chr11 98343132 98343260 -23500596 - B1_Mur3 SINE Alu -1 148 3 8 1335 303 234 16 0 chr11 98343291 98343355 -23500501 + ID4 SINE ID 19 83 0 8 1335 242 181 137 14 chr11 98343889 98343962 -23499894 - PB1D10 SINE Alu 0 117 36 8 1335 247 243 41 41 chr11 98344102 98344175 -23499681 + ID_B1 SINE B4 74 146 -78 8 1335 517 225 0 77 chr11 98344446 98344576 -23499280 + PB1D9 SINE Alu 1 120 0 8 1335 813 188 0 0 chr11 98344864 98345122 -23498734 + (CA)n Simple_repeat Simple_repeat 1 258 0 8 1335 323 254 92 17 chr11 98345183 98345303 -23498553 + L1M4 LINE L1 5700 5828 -1957 8 1335 345 24 0 0 chr11 98345381 98345423 -23498433 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1335 384 299 121 74 chr11 98346303 98346642 -23497214 + L2 LINE L2 2599 2953 -466 8 1335 587 172 17 17 chr11 98347255 98347373 -23496483 + B3 SINE B2 3 120 -96 8 1335 638 109 10 0 chr11 98347387 98347488 -23496368 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 8 1335 475 187 109 27 chr11 98347552 98347662 -23496194 + PB1D9 SINE Alu 1 119 -1 8 1335 556 206 0 31 chr11 98347733 98347863 -23495993 + B3 SINE B2 27 152 -64 8 1335 740 142 0 40 chr11 98348117 98348242 -23495614 + PB1D9 SINE Alu 1 120 0 8 1335 225 0 0 0 chr11 98348354 98348379 -23495477 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1335 222 310 0 27 chr11 98348449 98348522 -23495334 - ID4 SINE ID 0 83 13 8 1335 812 114 0 8 chr11 98348804 98348936 -23494920 + (GGGA)n Simple_repeat Simple_repeat 3 133 0 8 1335 522 270 7 33 chr11 98349330 98349483 -23494373 + B1F1 SINE Alu 1 149 0 8 1335 459 333 31 21 chr11 98349558 98349751 -23494105 - B3A SINE B2 0 198 4 8 1335 21 0 0 0 chr11 98349769 98349790 -23494066 + AT_rich Low_complexity Low_complexity 1 21 0 8 1335 189 0 0 0 chr11 98349839 98349860 -23493996 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1335 570 175 40 45 chr11 98350663 98350814 -23493042 - B1_Mur2 SINE Alu 0 149 3 8 1335 372 200 9 95 chr11 98350814 98350889 -23492967 - PB1D7 SINE Alu -38 82 17 8 1335 489 212 0 0 chr11 98351115 98351294 -23492562 + CT-rich Low_complexity Low_complexity 2 180 0 8 1335 678 176 56 0 chr11 98351297 98351422 -23492434 - B1_Mur2 SINE Alu -16 133 2 8 1335 297 308 0 0 chr11 98352091 98352260 -23491596 + (CA)n Simple_repeat Simple_repeat 1 169 0 8 1335 1325 75 11 26 chr11 98352530 98352721 -23491135 - B2_Mm2 SINE B2 -6 189 2 8 1335 423 0 0 0 chr11 98353192 98353239 -23490617 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1335 1059 238 8 39 chr11 98353239 98353493 -23490363 - B4 SINE B4 -30 262 17 8 1335 557 250 14 21 chr11 98353518 98353661 -23490195 + B1_Mur1 SINE Alu 2 143 -6 8 1335 190 250 46 15 chr11 98353846 98353911 -23489945 - MIR3 SINE MIR 0 208 142 8 1335 879 205 44 39 chr11 98354017 98354220 -23489636 + B3 SINE B2 1 204 -12 8 1335 195 69 0 0 chr11 98354220 98354249 -23489607 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 8 1335 195 167 0 0 chr11 98354731 98354773 -23489083 + CT-rich Low_complexity Low_complexity 4 45 0 8 1335 296 175 0 66 chr11 98355328 98355389 -23488467 + B4 SINE B4 196 252 -40 9 1335 770 142 0 4 chr11 98356328 98356578 -23487278 + (TC)n Simple_repeat Simple_repeat 1 249 0 9 1335 672 266 11 34 chr11 98356635 98356810 -23487046 + B3A SINE B2 1 171 -27 9 1335 342 0 0 0 chr11 98356816 98356854 -23487002 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1335 365 301 32 24 chr11 98356878 98357004 -23486852 + PB1 SINE Alu 1 127 0 9 1335 676 222 27 20 chr11 98357059 98357192 -23486664 + B1_Mur2 SINE Alu 1 136 -13 9 1335 216 0 0 0 chr11 98357192 98357216 -23486640 + (CAA)n Simple_repeat Simple_repeat 1 24 0 9 1335 676 222 27 20 chr11 98357216 98357229 -23486627 + B1_Mur2 SINE Alu 137 147 -2 9 1335 967 240 24 24 chr11 98357229 98357438 -23486418 - B3 SINE B2 -7 209 1 9 1335 270 319 17 26 chr11 98357489 98357605 -23486251 + PB1D10 SINE Alu 1 115 -2 9 1335 191 36 36 0 chr11 98357664 98357692 -23486164 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1335 872 143 0 21 chr11 98357692 98357835 -23486021 - B1_Mur4 SINE Alu -9 141 2 9 1335 478 259 25 17 chr11 98357880 98357998 -23485858 + RSINE1 SINE B4 24 142 -23 9 1335 254 224 86 43 chr11 98358169 98358239 -23485617 - ID SINE ID -149 75 3 9 1335 360 327 13 6 chr11 98358370 98358527 -23485329 + L1ME3B LINE L1 6083 6240 0 9 1335 404 0 0 82 chr11 98359639 98359700 -23484156 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1335 180 0 0 0 chr11 98359728 98359748 -23484108 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1335 1004 191 20 10 chr11 98360717 98360918 -23482938 + B3 SINE B2 14 216 0 9 1335 555 217 23 23 chr11 98361023 98361155 -23482701 + B3 SINE B2 3 134 -82 9 1335 740 175 0 0 chr11 98361149 98361269 -23482587 - B1_Mur2 SINE Alu -5 144 25 9 1335 307 365 0 10 chr11 98361282 98361379 -23482477 - PB1D10 SINE Alu -21 96 1 9 1335 327 100 0 0 chr11 98361384 98361399 -23482457 + (TC)n Simple_repeat Simple_repeat 1 15 0 9 1335 750 53 0 0 chr11 98361399 98361494 -23482362 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 9 1335 327 100 0 0 chr11 98361494 98361528 -23482328 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1335 961 282 17 40 chr11 98361550 98361849 -23482007 + B4A SINE B4 1 292 0 9 1335 279 0 0 0 chr11 98362128 98362159 -23481697 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 9 1335 443 345 29 49 chr11 98362375 98362579 -23481277 - ID_B1 SINE B4 -24 200 1 9 1335 356 238 129 0 chr11 98362586 98362687 -23481169 - PB1D10 SINE Alu -13 114 1 9 1335 200 34 0 33 chr11 98362981 98363011 -23480845 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 9 1335 21 36 0 0 chr11 98363047 98363075 -23480781 + AT_rich Low_complexity Low_complexity 1 28 0 9 1335 256 200 0 0 chr11 98363746 98363796 -23480060 + L1ME1 LINE L1 5060 5109 -1037 9 1335 1168 54 143 0 chr11 98363887 98364055 -23479801 + B2_Mm2 SINE B2 2 193 -2 9 1335 479 269 126 10 chr11 98364151 98364382 -23479474 + L1ME1 LINE L1 5334 5588 -2454 9 1335 269 345 77 58 chr11 98364413 98364739 -23479117 + MLT1F1 LTR MaLR 123 454 -115 9 1335 275 307 44 0 chr11 98364850 98364964 -23478892 + L1ME1 LINE L1 5595 5713 -466 9 1335 357 267 33 0 chr11 98365043 98365133 -23478723 + B1_Mur2 SINE Alu 1 93 -56 9 1335 512 339 50 4 chr11 98365146 98365407 -23478449 + L1ME1 LINE L1 5814 6086 -93 9 1335 221 276 69 36 chr11 98365494 98365612 -23478244 + B4 SINE B4 2 133 -32 9 1335 24 77 0 0 chr11 98365638 98365690 -23478166 + AT_rich Low_complexity Low_complexity 1 52 0 9 1335 315 250 0 0 chr11 98366875 98366943 -23476913 + ID4_ SINE ID 8 75 -8 9 1335 492 128 0 0 chr11 98366955 98367033 -23476823 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 9 1335 584 259 39 45 chr11 98367173 98367351 -23476505 + B3A SINE B2 5 181 -17 9 1335 208 206 0 0 chr11 98367351 98367385 -23476471 + (CG)n Simple_repeat Simple_repeat 2 35 0 9 1335 479 269 24 48 chr11 98367816 98367984 -23475872 + RMER30 DNA MER1_type 26 189 -13 9 1335 650 203 17 0 chr11 98368019 98368137 -23475719 + RSINE1 SINE B4 4 123 -42 9 1335 794 199 0 0 chr11 98368258 98368394 -23475462 + B1_Mus1 SINE Alu 1 136 -12 9 1335 1147 76 0 0 chr11 98368480 98368625 -23475231 + B1_Mus1 SINE Alu 1 145 -3 9 1335 185 0 40 0 chr11 98368625 98368650 -23475206 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 1335 538 183 9 9 chr11 98368818 98368923 -23474933 - B1F1 SINE Alu 0 149 45 9 1335 377 272 40 6 chr11 98369098 98369202 -23474654 - B1F SINE Alu 0 117 18 9 1335 1356 72 2 0 chr11 98369633 98370095 -23473761 + (TGGA)n Simple_repeat Simple_repeat 1 463 0 9 1335 510 231 1 1 chr11 98370175 98370278 -23473578 + B1F SINE Alu 12 115 -34 9 1335 297 128 0 0 chr11 98370289 98370336 -23473520 + (GGA)n Simple_repeat Simple_repeat 2 48 0 9 1335 304 193 18 0 chr11 98370811 98370868 -23472988 - MER63D DNA AcHobo -693 368 311 9 1335 228 238 191 0 chr11 98370877 98370940 -23472916 - MER63D DNA AcHobo -986 75 1 9 1335 488 136 0 11 chr11 98371286 98371375 -23472481 + (GGGAGA)n Simple_repeat Simple_repeat 4 91 0 9 1335 236 289 108 32 chr11 98371893 98371986 -23471870 + B1F SINE Alu 21 120 -29 9 1335 463 216 9 56 chr11 98372241 98372349 -23471507 + RSINE1 SINE B4 3 105 -60 9 1335 647 0 26 0 chr11 98373008 98373086 -23470770 + (TTTTG)n Simple_repeat Simple_repeat 4 83 0 9 1335 467 280 44 10 chr11 98373086 98373222 -23470634 - ID_B1 SINE B4 -12 212 81 9 1335 180 111 0 0 chr11 98373491 98373518 -23470338 + (ATG)n Simple_repeat Simple_repeat 3 29 0 9 1335 320 235 106 0 chr11 98373524 98373609 -23470247 - PB1D10 SINE Alu -23 94 1 9 1335 500 237 26 0 chr11 98373997 98374111 -23469745 - B1F2 SINE Alu 0 149 33 9 1335 233 224 0 0 chr11 98374647 98374696 -23469160 - L2c LINE L2 -1 3386 3338 9 1335 244 206 14 87 chr11 98375132 98375201 -23468655 + MER21B LTR ERV1 5 68 -795 9 1335 355 294 62 50 chr11 98375387 98375566 -23468290 + MER21B LTR ERV1 345 525 -338 9 1335 1016 274 128 28 chr11 98375732 98376122 -23467734 + MER21-int LTR ERV1 1 429 -3762 9 1335 714 301 26 11 chr11 98376144 98376416 -23467440 + B4A SINE B4 2 277 -15 9 1335 318 290 30 0 chr11 98376629 98376729 -23467127 - BC1_Mm scRNA scRNA -43 109 7 9 1335 590 290 84 0 chr11 98376798 98377012 -23466844 + MER4B-int LTR ERV1 3750 3981 -2777 9 1335 31 0 0 0 chr11 98377519 98377550 -23466306 + AT_rich Low_complexity Low_complexity 1 31 0 9 1335 311 261 8 115 chr11 98377657 98377787 -23466069 - PB1D10 SINE Alu 0 117 2 9 1335 452 258 115 12 chr11 98377875 98378040 -23465816 - B3A SINE B2 -16 182 1 9 1335 583 169 393 18 chr11 98378563 98378726 -23465130 - URR1B DNA MER1_type 0 225 2 9 1335 307 235 106 0 chr11 98379023 98379108 -23464748 - B1F SINE Alu -13 136 43 9 1335 810 190 0 21 chr11 98379311 98379451 -23464405 + B1_Mur4 SINE Alu 1 137 -13 9 1335 258 56 0 0 chr11 98379453 98379489 -23464367 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1335 369 0 0 0 chr11 98379614 98379655 -23464201 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1335 346 219 209 0 chr11 98379708 98379813 -23464043 - B4A SINE B4 -165 127 1 9 1335 750 201 8 0 chr11 98380301 98380435 -23463421 + B1_Mur1 SINE Alu 6 140 -9 9 1335 258 203 132 26 chr11 98380585 98380661 -23463195 + B1F SINE Alu 20 103 -46 9 1335 369 105 0 50 chr11 98380662 98380742 -23463114 + G-rich Low_complexity Low_complexity 1 76 0 9 1335 551 251 88 105 chr11 98380753 98381096 -23462760 - L1ME2z LINE L1 -382 6062 5726 9 1335 276 30 0 0 chr11 98381103 98381136 -23462720 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 9 1335 472 220 70 0 chr11 98381138 98381238 -23462618 - B1_Mur1 SINE Alu -20 129 23 9 1335 25 31 0 0 chr11 98381259 98381291 -23462565 + AT_rich Low_complexity Low_complexity 1 32 0 9 1335 981 188 29 10 chr11 98381308 98381512 -23462344 + B3 SINE B2 3 210 -6 9 1335 788 263 154 11 chr11 98381546 98381904 -23461952 - L1MC3 LINE L1 -21 7764 7356 9 1335 665 235 88 18 chr11 98381920 98382114 -23461742 - L1ME2z LINE L1 -758 5686 5444 9 1335 24 0 0 0 chr11 98382326 98382350 -23461506 + AT_rich Low_complexity Low_complexity 1 24 0 9 1335 236 272 87 0 chr11 98382416 98382519 -23461337 - L1ME2z LINE L1 -2667 3479 3368 9 1335 213 81 0 51 chr11 98382536 98382575 -23461281 + (CCCCCA)n Simple_repeat Simple_repeat 4 40 0 9 1335 317 236 221 0 chr11 98382678 98382805 -23461051 - L1ME2z LINE L1 -2928 3218 3064 9 1335 236 94 77 15 chr11 98383215 98383280 -23460576 + T-rich Low_complexity Low_complexity 3 71 0 9 1335 1029 122 20 0 chr11 98383281 98383428 -23460428 - B1_Mur4 SINE Alu 0 150 1 9 1335 468 229 11 0 chr11 98383432 98383535 -23460321 - B1_Mur1 SINE Alu -21 128 25 9 1335 531 295 31 31 chr11 98383903 98384127 -23459729 - L1ME2z LINE L1 -4404 1838 1615 9 1335 1334 177 0 0 chr11 98384240 98384455 -23459401 + B3 SINE B2 1 215 -1 9 1335 561 212 18 0 chr11 98384511 98384624 -23459232 + B1_Mur1 SINE Alu 20 134 -15 9 1335 502 248 40 8 chr11 98384647 98384773 -23459083 + B1F SINE Alu 1 130 -19 9 1335 407 277 24 40 chr11 98385219 98385343 -23458513 - B1F2 SINE Alu -16 133 12 9 1335 496 286 111 35 chr11 98385364 98385705 -23458151 - L1ME2z LINE L1 -5245 997 631 9 1335 222 242 0 0 chr11 98385936 98386002 -23457854 + (CA)n Simple_repeat Simple_repeat 2 67 0 9 1335 635 281 105 0 chr11 98387103 98387331 -23456525 + L1MC4 LINE L1 6786 7037 -1005 9 1335 759 215 6 55 chr11 98387350 98387532 -23456324 + B3 SINE B2 28 200 -16 9 1335 588 29 0 0 chr11 98387532 98387602 -23456254 + (TAAAA)n Simple_repeat Simple_repeat 5 74 0 9 1335 773 211 10 69 chr11 98387681 98387885 -23455971 - B3A SINE B2 -6 192 1 9 1335 349 285 114 39 chr11 98388062 98388413 -23455443 + L1MC4 LINE L1 7495 7908 -134 9 1335 427 263 8 34 chr11 98388857 98388975 -23454881 - B3A SINE B2 -37 161 47 9 1335 300 267 67 0 chr11 98389260 98389335 -23454521 - ID4_ SINE ID -2 81 2 9 1335 231 111 19 135 chr11 98390489 98390511 -23453345 + MT2B LTR ERVL 242 257 -344 9 1335 569 170 10 10 chr11 98390511 98390612 -23453244 + B1_Mus2 SINE Alu 1 101 -46 9 1335 582 284 0 21 chr11 98391316 98391460 -23452396 + ID_B1 SINE B4 84 224 0 9 1335 733 240 0 0 chr11 98391634 98391780 -23452076 + B1_Mur1 SINE Alu 2 147 -2 9 1335 784 257 42 14 chr11 98391965 98392182 -23451674 + ID_B1 SINE B4 2 224 0 1 1335 564 89 0 0 chr11 98392182 98392261 -23451595 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1335 348 316 72 0 chr11 98392291 98392430 -23451426 + L1ME2z LINE L1 1962 2110 -4132 1 1335 250 326 157 38 chr11 98392473 98392625 -23451231 + B3 SINE B2 10 182 -34 1 1335 267 93 0 0 chr11 98392625 98392668 -23451188 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 1 1335 870 196 0 52 chr11 98392668 98392679 -23451177 + RSINE1 SINE B4 155 165 0 1 1335 250 326 157 38 chr11 98392679 98392700 -23451156 + B3 SINE B2 183 215 -1 1 1335 576 327 64 24 chr11 98392709 98393297 -23450559 + L1ME2z LINE L1 5338 5981 -463 1 1335 468 0 0 0 chr11 98393369 98393421 -23450435 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 1 1335 857 132 8 0 chr11 98393421 98393542 -23450314 - B1_Mur4 SINE Alu -14 136 15 1 1335 426 292 30 37 chr11 98393542 98393556 -23450300 - ID_B1 SINE B4 -14 210 77 1 1335 447 19 0 0 chr11 98393567 98393619 -23450237 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1335 241 184 0 20 chr11 98393644 98393694 -23450162 + (TATG)n Simple_repeat Simple_repeat 3 51 0 1 1335 503 204 0 53 chr11 98393730 98393844 -23450012 + RSINE1 SINE B4 3 110 -55 1 1335 862 207 16 21 chr11 98394036 98394228 -23449628 + B3 SINE B2 1 191 -25 1 1335 345 47 0 0 chr11 98394873 98394916 -23448940 + (TCCCC)n Simple_repeat Simple_repeat 4 46 0 1 1335 998 197 43 0 chr11 98394950 98395138 -23448718 - B3 SINE B2 -18 198 3 1 1335 231 349 19 0 chr11 98395587 98395693 -23448163 + L2 LINE L2 2264 2371 -1048 1 1335 797 194 7 20 chr11 98395926 98396073 -23447783 + B1_Mur3 SINE Alu 1 145 -4 1 1335 276 297 170 61 chr11 98396082 98396229 -23447627 - RSINE1 SINE B4 -1 164 2 1 1335 735 48 0 0 chr11 98396343 98396446 -23447410 + L1Md_T LINE L1 6480 6582 0 1 1335 317 312 41 33 chr11 98396464 98396601 -23447255 + B1F SINE Alu 7 144 -5 1 1335 410 206 110 0 chr11 98396719 98396812 -23447044 - B1F SINE Alu -21 99 5 1 1335 377 298 130 0 chr11 98396838 98396969 -23446887 + B1F2 SINE Alu 1 148 -1 1 1335 207 100 0 0 chr11 98396989 98397019 -23446837 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1335 504 265 106 78 chr11 98397019 98397199 -23446657 + B3 SINE B2 27 211 -5 1 1335 293 276 110 66 chr11 98397310 98397446 -23446410 - MER5A1 DNA MER1_type 0 166 25 1 1335 1096 229 209 3 chr11 98397446 98397753 -23446103 + ORR1D1 LTR MaLR 1 370 -4 1 1335 1015 99 21 0 chr11 98397883 98398024 -23445832 - B1_Mus1 SINE Alu -4 144 1 1 1335 421 200 16 134 chr11 98397914 98398041 -23445815 - MT2B LTR ERVL -337 264 153 1 1335 305 259 14 14 chr11 98397919 98398064 -23445792 - ORR1B1-int LTR MaLR -755 754 610 1 1335 362 274 73 7 chr11 98398381 98398517 -23445339 - MER20B DNA MER1_type -381 402 258 1 1335 262 289 88 32 chr11 98398834 98398959 -23444897 - L2 LINE L2 -559 2860 2729 1 1335 355 239 65 0 chr11 98399238 98399330 -23444526 + PB1D10 SINE Alu 14 111 -6 1 1335 351 239 174 0 chr11 98399343 98399435 -23444421 + B3 SINE B2 20 127 -89 1 1335 424 308 98 0 chr11 98399446 98399579 -23444277 + ID_B1 SINE B4 79 224 0 1 1335 1248 40 0 13 chr11 98399610 98399760 -23444096 + B1_Mus1 SINE Alu 1 148 0 1 1335 489 237 164 45 chr11 98400193 98400370 -23443486 - B3A SINE B2 0 198 1 1 1335 22 0 0 0 chr11 98400379 98400401 -23443455 + AT_rich Low_complexity Low_complexity 1 22 0 1 1335 668 221 70 74 chr11 98400536 98400751 -23443105 + ID_B1 SINE B4 5 218 -6 1 1335 207 85 42 21 chr11 98400751 98400799 -23443057 + (GGAGA)n Simple_repeat Simple_repeat 1 49 0 1 1335 970 228 11 0 chr11 98400813 98400997 -23442859 + B3 SINE B2 20 205 -11 1 1335 997 280 60 7 chr11 98401078 98401376 -23442480 + RCHARR1 DNA MER1_type 9 322 -652 1 1335 678 122 93 47 chr11 98401393 98401522 -23442334 - B1_Mur3 SINE Alu -1 148 14 1 1335 642 224 35 12 chr11 98401546 98401718 -23442138 + RCHARR1 DNA MER1_type 323 498 -476 1 1335 729 225 60 55 chr11 98401725 98401908 -23441948 + B3A SINE B2 14 197 -1 1 1335 1703 191 128 18 chr11 98401913 98402351 -23441505 + RCHARR1 DNA MER1_type 483 968 -6 1 1335 252 222 98 120 chr11 98402599 98402691 -23441165 + RSINE1 SINE B4 76 165 0 1 1335 918 306 4 32 chr11 98402835 98403085 -23440771 + B4A SINE B4 46 288 -4 1 1335 411 257 55 9 chr11 98403160 98403270 -23440586 + PB1D7 SINE Alu 5 119 -1 1 1335 736 256 23 41 chr11 98403975 98404195 -23439661 + B3 SINE B2 1 216 0 1 1335 586 151 151 0 chr11 98404879 98404985 -23438871 + B1F SINE Alu 22 143 -6 1 1335 1067 134 6 0 chr11 98405848 98406027 -23437829 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1335 459 261 17 9 chr11 98407588 98407704 -23436152 + PB1D7 SINE Alu 3 119 -1 1 1335 202 206 0 0 chr11 98407842 98407876 -23435980 + polypurine Low_complexity Low_complexity 3 36 0 1 1335 690 207 0 40 chr11 98408255 98408406 -23435450 + B1_Mur2 SINE Alu 1 145 -4 1 1335 180 0 0 0 chr11 98408431 98408451 -23435405 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1335 1196 221 103 128 chr11 98409021 98409175 -23434681 + L1MC3 LINE L1 7089 7260 -525 1 1335 1239 41 0 13 chr11 98409175 98409324 -23434532 + B1_Mus2 SINE Alu 1 147 0 1 1335 1196 221 103 128 chr11 98409324 98409723 -23434133 + L1MC3 LINE L1 7261 7628 -157 1 1335 649 221 16 0 chr11 98409724 98409851 -23434005 + B1_Mm SINE Alu 2 130 -17 1 1335 1317 95 21 16 chr11 98409993 98410186 -23433670 + B2_Mm2 SINE B2 2 195 0 1 1335 680 197 41 34 chr11 98410342 98410489 -23433367 + B1_Mur3 SINE Alu 2 149 0 1 1335 492 18 0 0 chr11 98410546 98410603 -23433253 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1335 870 123 13 82 chr11 98410620 98410779 -23433077 - B1_Mur4 SINE Alu -2 148 1 1 1335 573 264 88 34 chr11 98410785 98410989 -23432867 - B3A SINE B2 0 216 2 1 1335 1026 167 30 30 chr11 98411107 98411305 -23432551 + B3 SINE B2 5 202 -14 1 1335 233 326 34 0 chr11 98413077 98413166 -23430690 + L2c LINE L2 3064 3155 -232 1 1335 23 0 0 0 chr11 98413898 98413921 -23429935 + AT_rich Low_complexity Low_complexity 1 23 0 1 1335 1161 175 24 10 chr11 98414001 98414209 -23429647 - B3 SINE B2 -5 211 1 1 1335 230 337 0 53 chr11 98414302 98414396 -23429460 + ID_B1 SINE B4 79 167 -57 1 1335 278 254 57 27 chr11 98414323 98414408 -23429448 + B1F1 SINE Alu 15 101 -19 1 1335 182 62 31 0 chr11 98414640 98414672 -23429184 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1335 203 211 19 0 chr11 98414674 98414726 -23429130 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1335 959 158 0 0 chr11 98414863 98415002 -23428854 + B1_Mur1 SINE Alu 5 143 -6 1 1335 26 0 0 0 chr11 98415299 98415325 -23428531 + AT_rich Low_complexity Low_complexity 1 26 0 1 1335 475 219 211 6 chr11 98415380 98415397 -23428459 - B3A SINE B2 -10 188 172 1 1335 279 0 0 0 chr11 98415397 98415428 -23428428 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1335 475 219 211 6 chr11 98415428 98415566 -23428290 - B3A SINE B2 -27 171 2 1 1335 1106 29 66 0 chr11 98416154 98416291 -23427565 + B1_Mm SINE Alu 2 147 0 1 1335 476 181 0 12 chr11 98416956 98417040 -23426816 + ID_B1 SINE B4 142 224 0 1 1335 234 62 0 0 chr11 98417089 98417121 -23426735 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1335 451 307 11 69 chr11 98417188 98417363 -23426493 - RSINE1 SINE B4 0 165 1 1 1335 303 236 0 0 chr11 98417408 98417463 -23426393 - RSINE1 SINE B4 -50 115 61 1 1335 211 221 52 117 chr11 98417410 98417487 -23426369 - B1_Mus1 SINE Alu -76 72 1 1 1335 881 193 66 47 chr11 98417818 98418030 -23425826 - B3 SINE B2 0 216 1 1 1335 569 249 101 51 chr11 98418184 98418362 -23425494 - B4 SINE B4 0 292 106 1 1335 956 89 209 0 chr11 98418407 98418565 -23425291 - B2_Mm2 SINE B2 -4 191 1 1 1335 895 191 163 0 chr11 98420039 98420217 -23423639 - B3 SINE B2 -6 210 4 1 1335 525 16 0 0 chr11 98420372 98420434 -23423422 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1335 450 0 0 0 chr11 98420434 98420483 -23423373 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1335 540 296 195 13 chr11 98420585 98421175 -23422681 - L1MC2 LINE L1 -306 6027 5300 1 1335 287 291 11 34 chr11 98421447 98421536 -23422320 + B1F SINE Alu 58 144 -5 1 1335 284 246 58 0 chr11 98422218 98422287 -23421569 + MER106B DNA MER1_type 964 1036 -23 1 1335 318 107 0 0 chr11 98422605 98422661 -23421195 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1335 372 164 0 0 chr11 98422736 98422803 -23421053 + CT-rich Low_complexity Low_complexity 1 67 0 1 1335 415 269 9 9 chr11 98422803 98422919 -23420937 - PB1D7 SINE Alu 0 120 5 1 1335 344 281 25 34 chr11 98423070 98423188 -23420668 + ID_B1 SINE B4 82 198 -26 1 1335 576 196 0 0 chr11 98423089 98423196 -23420660 + B1F SINE Alu 22 128 -21 1 1335 259 203 14 68 chr11 98423164 98423238 -23420618 + ID_B1 SINE B4 146 215 -9 1 1335 254 197 16 0 chr11 98423367 98423428 -23420428 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1335 548 303 8 15 chr11 98423542 98423676 -23420180 - B4A SINE B4 -74 218 86 1 1335 624 264 77 27 chr11 98423695 98423878 -23419978 - B3A SINE B2 -6 192 1 1 1335 250 279 15 0 chr11 98423885 98423953 -23419903 - B4A SINE B4 -220 72 4 1 1335 569 285 39 0 chr11 98423989 98424119 -23419737 - ID_B1 SINE B4 -6 218 84 1 1335 1124 45 58 0 chr11 98424233 98424388 -23419468 - B2_Mm2 SINE B2 0 195 32 1 1335 936 220 11 0 chr11 98424929 98425120 -23418736 + B3 SINE B2 3 195 -21 1 1335 498 233 187 37 chr11 98426478 98426580 -23417276 + RLTR15 LTR ERVK 1 127 -232 1 1335 225 0 0 0 chr11 98426580 98426605 -23417251 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1335 498 233 187 37 chr11 98426605 98426796 -23417060 + RLTR15 LTR ERVK 128 338 -21 1 1335 305 244 0 58 chr11 98426975 98427062 -23416794 - PB1 SINE Alu -23 104 23 1 1335 260 292 125 0 chr11 98427113 98427185 -23416671 - ID4_ SINE ID -1 82 2 1 1335 310 213 123 68 chr11 98427252 98427393 -23416463 - ID_B1 SINE B4 0 224 83 1 1335 698 284 163 100 chr11 98427722 98428294 -23415562 + RLTR18 LTR ERVK 5 612 -4 1 1335 1607 122 68 145 chr11 98428297 98428576 -23415280 - MTC LTR MaLR -12 409 122 1 1335 1384 69 17 0 chr11 98428576 98428751 -23415105 + B2_Mm2 SINE B2 1 178 -17 1 1335 1607 122 68 145 chr11 98428751 98428836 -23415020 - MTC LTR MaLR -300 121 73 1 1335 302 217 14 28 chr11 98428965 98429036 -23414820 - MTEb LTR MaLR -60 319 250 1 1335 332 333 61 44 chr11 98429202 98429431 -23414425 - L1M5 LINE L1 -799 5347 5115 1 1335 226 340 107 15 chr11 98429524 98429721 -23414135 - L1M5 LINE L1 -1255 4891 4677 1 1335 663 230 20 74 chr11 98429723 98429925 -23413931 + B3A SINE B2 3 193 -5 1 1335 208 0 62 0 chr11 98429943 98429975 -23413881 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1335 253 140 0 34 chr11 98430348 98430407 -23413449 + CT-rich Low_complexity Low_complexity 1 57 0 1 1335 457 221 61 9 chr11 98430670 98430784 -23413072 - PB1D7 SINE Alu 0 120 1 1 1335 299 257 41 22 chr11 98430919 98431028 -23412828 - B4A SINE B4 -44 248 138 1 1335 444 103 115 0 chr11 98431239 98431317 -23412539 - B2_Mm2 SINE B2 -14 181 95 1 1335 222 37 0 0 chr11 98431320 98431347 -23412509 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1335 783 188 8 0 chr11 98431380 98431513 -23412343 - B1_Mur4 SINE Alu -2 148 15 1 1335 1089 76 14 0 chr11 98431516 98431660 -23412196 + B1_Mus2 SINE Alu 2 147 0 1 1335 1183 62 7 0 chr11 98431793 98431939 -23411917 - B1_Mus1 SINE Alu -1 147 1 1 1335 389 285 15 175 chr11 98431939 98432021 -23411835 - L1M2 LINE L1 -509 5782 5701 1 1335 801 188 28 0 chr11 98432021 98432165 -23411691 + B1_Mus1 SINE Alu 1 148 0 1 1335 389 282 95 141 chr11 98432165 98432577 -23411279 - L1M2 LINE L1 -600 5700 5311 1 1335 1139 90 6 0 chr11 98432740 98432906 -23410950 + (TTCTCC)n Simple_repeat Simple_repeat 3 169 0 1 1335 1102 48 0 81 chr11 98432976 98433136 -23410720 + B1_Mus1 SINE Alu 2 148 0 1 1335 327 49 0 0 chr11 98433138 98433179 -23410677 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1335 1534 195 200 94 chr11 98433221 98433702 -23410154 + MT2A LTR ERVL 1 532 -1 1 1335 326 233 27 0 chr11 98433707 98433780 -23410076 - PB1D10 SINE Alu -41 76 2 1 1335 212 297 13 63 chr11 98433837 98433916 -23409940 + ID4 SINE ID 7 81 -2 1 1335 665 194 97 0 chr11 98434205 98434339 -23409517 + B1_Mus2 SINE Alu 1 147 0 1 1335 1297 27 0 0 chr11 98434351 98434498 -23409358 + B1_Mm SINE Alu 1 147 0 1 1335 432 0 0 0 chr11 98434754 98434802 -23409054 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 166 4451 108 103 1 chr11 98434841 98435508 -23408348 + RMER19A LTR ERVK 1 735 -2 1 1336 369 202 152 27 chr11 98436429 98436541 -23407315 - ID_B1 SINE B4 -17 207 82 1 1336 273 57 0 0 chr11 98436579 98436614 -23407242 + (ATG)n Simple_repeat Simple_repeat 1 35 0 1 1336 645 221 21 3 chr11 98436807 98436947 -23406909 + ID_B1 SINE B4 80 234 -58 1 1336 908 161 20 0 chr11 98436988 98437137 -23406719 + MTC LTR MaLR 270 421 0 1 1336 261 57 0 0 chr11 98438272 98438307 -23405549 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 1 1336 335 312 101 28 chr11 98438507 98438685 -23405171 - MIRb SINE MIR -59 209 19 1 1336 597 169 169 0 chr11 98438786 98438910 -23404946 + B1_Mus2 SINE Alu 3 147 0 1 1336 1260 87 48 16 chr11 98438913 98439101 -23404755 + B2_Mm2 SINE B2 2 195 0 1 1336 303 28 0 0 chr11 98439437 98439473 -23404383 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1 1336 894 120 60 0 chr11 98439474 98439607 -23404249 - B1_Mus1 SINE Alu -1 147 7 1 1336 303 254 34 76 chr11 98439508 98439627 -23404229 - MT2B LTR ERVL -337 264 151 1 1336 299 203 14 0 chr11 98439924 98439998 -23403858 + GA-rich Low_complexity Low_complexity 3 77 0 1 1336 343 56 0 36 chr11 98440002 98440058 -23403798 + (TCC)n Simple_repeat Simple_repeat 3 56 0 1 1336 479 244 62 75 chr11 98440159 98440305 -23403551 - ID_B1 SINE B4 0 224 81 1 1336 1299 168 5 23 chr11 98440331 98440550 -23403306 - B3 SINE B2 0 216 2 1 1336 1210 41 0 7 chr11 98440568 98440716 -23403140 - B1_Mm SINE Alu 0 147 1 1 1336 213 39 0 0 chr11 98444167 98444193 -23399663 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1 1336 305 253 50 40 chr11 98450902 98451001 -23392855 + B1F SINE Alu 41 140 -9 1 1336 1634 113 36 236 chr11 98451047 98451543 -23392313 + RMER10B LTR ERVL 2 398 0 1 1336 632 165 10 0 chr11 98451553 98451656 -23392200 + B1_Mur2 SINE Alu 42 145 -4 1 1336 30 0 0 0 chr11 98451664 98451694 -23392162 + AT_rich Low_complexity Low_complexity 1 30 0 1 1336 316 274 39 158 chr11 98451726 98451960 -23391896 + L1MC5 LINE L1 7720 7925 -36 1 1336 560 283 78 21 chr11 98452066 98452257 -23391599 + MIR SINE MIR 61 262 0 1 1336 2056 136 26 6 chr11 98453008 98453356 -23390500 + RLTR15 LTR ERVK 1 355 -4 1 1336 558 0 0 0 chr11 98454357 98454419 -23389437 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1336 477 0 0 0 chr11 98454470 98454523 -23389333 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1336 368 262 27 65 chr11 98454532 98454716 -23389140 - L1MA4 LINE L1 -373 5927 5751 1 1336 1068 201 9 31 chr11 98454799 98455025 -23388831 - RLTR18B LTR ERVK -3 509 289 1 1336 180 0 0 0 chr11 98455082 98455102 -23388754 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1336 882 231 22 122 chr11 98455110 98455199 -23388657 - RLTR18B LTR ERVK -261 251 175 1 1336 996 154 45 11 chr11 98455199 98455376 -23388480 + B2_Mm2 SINE B2 2 184 -11 1 1336 882 231 22 122 chr11 98455376 98455557 -23388299 - RLTR18B LTR ERVK -338 174 8 1 1336 725 167 8 8 chr11 98456129 98456250 -23387606 + B1_Mur4 SINE Alu 21 141 -9 1 1336 213 39 0 0 chr11 98456268 98456294 -23387562 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1 1336 760 275 9 15 chr11 98456548 98456751 -23387105 + B3A SINE B2 1 199 -17 1 1336 201 74 0 0 chr11 98456751 98456778 -23387078 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1336 592 314 37 50 chr11 98456778 98456792 -23387064 + B3 SINE B2 200 215 -1 1 1336 568 117 29 0 chr11 98457234 98457337 -23386519 + (GAAA)n Simple_repeat Simple_repeat 1 106 0 1 1336 322 311 20 176 chr11 98457553 98457649 -23386207 + MER45A DNA Tip100 51 139 -39 1 1336 1259 48 0 0 chr11 98457649 98457796 -23386060 - B1_Mus2 SINE Alu 0 147 1 1 1336 322 311 20 176 chr11 98457796 98457847 -23386009 + MER45A DNA Tip100 140 175 -3 1 1336 291 85 0 0 chr11 98457864 98457911 -23385945 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1336 463 206 67 29 chr11 98457911 98458016 -23385840 + B1F SINE Alu 31 139 -10 1 1336 24 32 0 0 chr11 98458023 98458054 -23385802 + AT_rich Low_complexity Low_complexity 1 31 0 1 1336 1231 133 13 72 chr11 98458065 98458300 -23385556 - URR1B DNA MER1_type -4 221 1 1 1336 342 0 0 0 chr11 98458938 98458976 -23384880 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1336 480 18 0 0 chr11 98459874 98459931 -23383925 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 1 1336 768 147 44 7 chr11 98460971 98461108 -23382748 + URR1A DNA MER1_type 1 142 -84 1 1336 378 0 0 0 chr11 98461111 98461153 -23382703 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1336 772 305 22 87 chr11 98461401 98461713 -23382143 + B4A SINE B4 1 292 0 1 1336 390 42 0 0 chr11 98461721 98461769 -23382087 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1336 441 0 0 0 chr11 98463976 98464025 -23379831 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1336 180 0 0 0 chr11 98464236 98464256 -23379600 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1336 727 201 194 6 chr11 98464291 98464471 -23379385 + B3 SINE B2 3 216 0 1 1336 887 124 13 88 chr11 98464474 98464633 -23379223 + B1_Mus1 SINE Alu 2 148 0 1 1336 418 279 26 43 chr11 98464651 98464767 -23379089 + PB1D10 SINE Alu 3 116 -1 1 1336 873 185 84 5 chr11 98464855 98465045 -23378811 + Lx8 LINE L1 6872 7076 -397 1 1336 252 233 109 25 chr11 98465167 98465286 -23378570 + Lx8 LINE L1 7343 7471 -2 1 1336 1113 220 5 5 chr11 98465335 98465550 -23378306 + B3 SINE B2 1 215 -1 1 1336 312 358 67 142 chr11 98465562 98465758 -23378098 + B4A SINE B4 1 197 -95 1 1336 1324 74 40 0 chr11 98465758 98465934 -23377922 + B2_Mm2 SINE B2 1 183 -12 1 1336 1044 151 0 0 chr11 98465934 98466113 -23377743 + GA-rich Low_complexity Low_complexity 2 180 0 1 1336 312 358 67 142 chr11 98466113 98466231 -23377625 + B4A SINE B4 198 291 -1 1 1336 629 225 6 38 chr11 98466906 98467066 -23376790 + ID_B1 SINE B4 73 223 -1 1 1336 200 327 0 0 chr11 98467527 98467582 -23376274 + GA-rich Low_complexity Low_complexity 4 58 0 1 1336 414 250 36 0 chr11 98467592 98467676 -23376180 + PB1D10 SINE Alu 4 90 -27 1 1336 312 147 0 39 chr11 98467678 98467756 -23376100 + GA-rich Low_complexity Low_complexity 3 77 0 1 1336 298 312 71 30 chr11 98468438 98468537 -23375319 + B3A SINE B2 76 178 -20 1 1336 255 274 0 40 chr11 98468541 98468617 -23375239 + ID_B1 SINE B4 145 217 -7 1 1336 480 108 0 39 chr11 98468549 98468626 -23375230 + B1_Mus2 SINE Alu 73 146 -1 1 1336 1126 111 0 18 chr11 98468639 98468804 -23375052 + B2_Mm2 SINE B2 3 164 -31 1 1336 1455 39 0 0 chr11 98468815 98468993 -23374863 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 1336 520 250 178 14 chr11 98468999 98469145 -23374711 + B3 SINE B2 47 216 0 1 1336 326 303 0 0 chr11 98469197 98469273 -23374583 + PB1D10 SINE Alu 24 99 -18 1 1336 398 263 16 109 chr11 98469376 98469504 -23374352 + RSINE1 SINE B4 50 165 0 1 1336 215 307 0 0 chr11 98469508 98469583 -23374273 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1336 615 14 0 0 chr11 98469619 98469691 -23374165 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1336 1138 101 19 0 chr11 98470766 98470924 -23372932 + B2_Mm2 SINE B2 1 161 -34 1 1336 1955 163 16 14 chr11 98471094 98471461 -23372395 + RLTR9A LTR ERVK 1 368 0 1 1336 2540 138 40 16 chr11 98471627 98472054 -23371802 + RLTR9B LTR ERVK 1 437 0 1 1336 6207 137 38 62 chr11 98472175 98472659 -23371197 + ETnERV2-int LTR ERVK 1175 1642 -5764 1 1336 1478 38 21 21 chr11 98472659 98472845 -23371011 + B2_Mm1a SINE B2 2 187 -6 1 1336 6207 137 38 62 chr11 98472845 98473249 -23370607 + ETnERV2-int LTR ERVK 1643 2042 -5364 1 1336 339 44 0 0 chr11 98473249 98473294 -23370562 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1336 6207 137 38 62 chr11 98473294 98473690 -23370166 + ETnERV2-int LTR ERVK 2043 2428 -4978 1 1336 834 212 171 110 chr11 98473708 98473989 -23369867 - RLTR1B LTR ERV1 -214 298 1 1 1336 2783 234 10 2 chr11 98473989 98474581 -23369275 - MMERGLN-int LTR ERV1 0 7556 6960 1 1336 2942 33 0 3 chr11 98474591 98474929 -23368927 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1336 53584 25 15 7 chr11 98474929 98481352 -23362504 + IAPEz-int LTR ERVK 8 6481 0 1 1336 2942 33 0 3 chr11 98481352 98481690 -23362166 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1336 2222 266 9 11 chr11 98481690 98482257 -23361599 - MMERGLN-int LTR ERV1 -601 6955 6390 1 1336 227 176 137 68 chr11 98482749 98482822 -23361034 - MER5B DNA MER1_type -14 164 87 1 1336 11086 216 3 3 chr11 98482885 98485037 -23358819 - MMERGLN-int LTR ERV1 -1908 5648 3498 1 1336 806 58 0 0 chr11 98485042 98485146 -23358710 - RLTR1B-int LTR ERV1 -3195 104 1 1 1336 1755 110 28 84 chr11 98485146 98485602 -23358254 - RLTR1B LTR ERV1 0 624 165 1 1336 252 143 0 0 chr11 98485642 98485684 -23358172 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1336 312 122 0 0 chr11 98486976 98487025 -23356831 + RLTR9A LTR ERVK 320 368 0 1 1336 7114 93 30 30 chr11 98487955 98488540 -23355316 - RLTR13D4 LTR ERVK 0 1033 432 1 1336 1060 117 0 14 chr11 98488540 98488676 -23355180 + B1_Mus2 SINE Alu 2 137 -10 1 1336 206 0 69 0 chr11 98488676 98488705 -23355151 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1336 1060 117 0 14 chr11 98488705 98488716 -23355140 + B1_Mus2 SINE Alu 138 147 0 1 1336 7114 93 30 30 chr11 98488716 98489163 -23354693 - RLTR13D4 LTR ERVK -602 431 1 1 1336 189 245 0 0 chr11 98489754 98489803 -23354053 + CT-rich Low_complexity Low_complexity 3 51 0 1 1336 453 36 0 0 chr11 98489828 98489883 -23353973 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1 1336 1092 114 6 0 chr11 98489883 98490041 -23353815 - B2_Mm1t SINE B2 -33 160 2 1 1336 2043 194 58 0 chr11 98491282 98491746 -23352110 + L1_Mur2 LINE L1 5086 5576 -301 1 1336 244 322 0 0 chr11 98492091 98492150 -23351706 - MIRb SINE MIR -92 176 118 1 1336 690 209 77 8 chr11 98492247 98492377 -23351479 + B1_Mur3 SINE Alu 4 142 -7 1 1336 512 229 57 9 chr11 98492793 98492899 -23350957 + PB1D10 SINE Alu 6 116 -33 1 1336 1321 102 0 6 chr11 98493203 98493381 -23350475 + B2_Mm2 SINE B2 1 177 -18 1 1336 186 143 0 0 chr11 98493383 98493418 -23350438 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1336 531 0 0 0 chr11 98493419 98493478 -23350378 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 1336 1322 85 37 11 chr11 98495002 98495192 -23348664 - B2_Mm2 SINE B2 0 195 1 1 1336 1218 68 0 0 chr11 98495314 98495460 -23348396 - B1_Mus1 SINE Alu -2 146 1 1 1336 219 228 0 0 chr11 98495589 98495681 -23348175 + GA-rich Low_complexity Low_complexity 2 93 0 1 1336 444 42 0 40 chr11 98495914 98495988 -23347868 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1 1336 1167 75 0 20 chr11 98495993 98496143 -23347713 + B1_Mus1 SINE Alu 1 147 -1 1 1336 719 202 17 0 chr11 98497360 98497599 -23346257 + (TATATG)n Simple_repeat Simple_repeat 1 243 0 1 1336 409 131 0 0 chr11 98497601 98497662 -23346194 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1336 189 0 0 0 chr11 98497769 98497790 -23346066 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1336 321 190 0 0 chr11 98497808 98497876 -23345980 - B2_Mm2 SINE B2 -102 114 47 1 1336 1156 123 6 0 chr11 98497946 98498116 -23345740 - B2_Mm1t SINE B2 -22 171 1 1 1336 283 208 53 40 chr11 98498285 98498360 -23345496 + B1F SINE Alu 74 149 0 1 1336 780 210 14 7 chr11 98498412 98498556 -23345300 - B1_Mur1 SINE Alu -2 147 3 1 1336 264 247 0 0 chr11 98498626 98498711 -23345145 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 1 1336 1844 33 44 40 chr11 98499544 98499640 -23344216 + LTRIS5 LTR ERV1 1 97 -350 1 1336 1228 76 24 107 chr11 98499640 98499846 -23344010 + B2_Mm2 SINE B2 1 189 -6 1 1336 1844 33 44 40 chr11 98499846 98500000 -23343856 + LTRIS5 LTR ERV1 98 252 -195 1 1336 1373 78 16 0 chr11 98500000 98500192 -23343664 + LTRIS5 LTR ERV1 253 447 0 1 1336 785 187 7 7 chr11 98500288 98500428 -23343428 + B1_Mur4 SINE Alu 9 148 -2 2 1336 198 103 0 0 chr11 98500860 98500889 -23342967 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1336 990 110 21 0 chr11 98500889 98501034 -23342822 + B1_Mus1 SINE Alu 1 148 0 4 1336 428 263 37 62 chr11 98501066 98501264 -23342592 + B3 SINE B2 8 190 -5 5 1336 684 134 159 38 chr11 98501271 98501403 -23342453 + B1_Mur2 SINE Alu 1 148 -1 6 1336 28 0 0 0 chr11 98501413 98501441 -23342415 + AT_rich Low_complexity Low_complexity 1 28 0 7 1336 434 139 12 0 chr11 98501488 98501574 -23342282 + (CA)n Simple_repeat Simple_repeat 1 87 0 8 1336 3673 200 118 18 chr11 98502121 98502992 -23340864 - RMER17B LTR ERVK 0 958 1 9 1336 589 260 8 9 chr11 98503090 98503243 -23340613 + ID_B1 SINE B4 73 224 -68 1 1336 354 123 0 0 chr11 98503268 98503325 -23340531 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1336 232 298 0 0 chr11 98503738 98503795 -23340061 + GA-rich Low_complexity Low_complexity 4 60 0 1 1336 349 298 36 0 chr11 98503803 98503887 -23339969 + PB1D10 SINE Alu 4 90 -27 1 1336 303 333 31 0 chr11 98503887 98503899 -23339957 + ID_B1 SINE B4 85 183 -41 1 1336 234 156 0 45 chr11 98503900 98503967 -23339889 + GA-rich Low_complexity Low_complexity 4 67 0 1 1336 5259 173 57 32 chr11 98504144 98504816 -23339040 + RMER16-int LTR ERVK 2176 2862 -2544 1 1336 447 19 0 0 chr11 98504816 98504868 -23338988 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1336 252 0 0 0 chr11 98504868 98504895 -23338961 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1336 5259 158 131 25 chr11 98504895 98506081 -23337775 + RMER16-int LTR ERVK 2863 4175 -1231 1 1336 395 286 0 38 chr11 98506079 98506210 -23337646 + ETnERV2-int LTR ERVK 6086 6211 -1195 1 1336 353 261 166 24 chr11 98506286 98506455 -23337401 + ETnERV2-int LTR ERVK 6233 6425 -981 1 1336 372 149 26 26 chr11 98506662 98506738 -23337118 + ETnERV2-int LTR ERVK 7329 7404 -2 1 1336 1660 154 107 12 chr11 98506739 98506945 -23336911 + RLTR9A LTR ERVK 1 228 -140 1 1336 327 25 0 0 chr11 98506945 98506985 -23336871 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1336 1660 154 107 12 chr11 98506985 98507114 -23336742 + RLTR9A LTR ERVK 229 368 0 1 1336 392 231 12 135 chr11 98507676 98507846 -23336010 + RNLTR23 LTR ERVK 480 628 -14 2 1336 351 326 96 25 chr11 98508724 98508922 -23334934 - L2c LINE L2 -2 3385 3174 2 1336 397 257 7 7 chr11 98508965 98509102 -23334754 + CT-rich Low_complexity Low_complexity 2 138 0 2 1336 447 278 0 45 chr11 98509106 98509238 -23334618 + C-rich Low_complexity Low_complexity 3 128 0 2 1336 959 155 6 0 chr11 98509238 98509412 -23334444 + CT-rich Low_complexity Low_complexity 1 175 0 2 1336 425 190 47 12 chr11 98509412 98509497 -23334359 - B2_Mm2 SINE B2 -103 92 5 2 1336 243 0 0 0 chr11 98509507 98509534 -23334322 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1336 1196 64 0 0 chr11 98509539 98509679 -23334177 - B1_Mm SINE Alu -7 140 1 2 1336 2014 198 64 2 chr11 98510987 98511443 -23332413 + L1_Mur2 LINE L1 5080 5563 -314 2 1336 227 304 32 11 chr11 98511574 98511667 -23332189 - L2c LINE L2 -1506 1913 1819 2 1336 239 298 0 0 chr11 98511778 98511835 -23332021 - MIRb SINE MIR -94 174 118 3 1336 667 197 86 8 chr11 98511952 98512080 -23331776 + B1_Mur1 SINE Alu 5 142 -7 3 1336 519 234 6 1 chr11 98512493 98512599 -23331257 + PB1D10 SINE Alu 6 116 -33 3 1336 1104 152 0 55 chr11 98512903 98513105 -23330751 + B2_Mm2 SINE B2 1 191 -4 3 1336 1680 26 5 0 chr11 98514420 98514611 -23329245 + B2_Mm1a SINE B2 2 193 0 3 1336 22 35 0 0 chr11 98514840 98514869 -23328987 + AT_rich Low_complexity Low_complexity 1 29 0 3 1336 1046 116 0 20 chr11 98514869 98515019 -23328837 + B1_Mus1 SINE Alu 2 148 0 3 1336 1357 52 46 0 chr11 98515036 98515209 -23328647 - B2_Mm2 SINE B2 -14 181 1 3 1336 1036 72 72 0 chr11 98515269 98515407 -23328449 - B1_Mus1 SINE Alu 0 148 1 3 1336 302 256 11 0 chr11 98515528 98515618 -23328238 + GA-rich Low_complexity Low_complexity 2 92 0 3 1336 703 214 7 7 chr11 98517022 98517306 -23326550 + (TATATG)n Simple_repeat Simple_repeat 1 284 0 4 1336 397 136 283 26 chr11 98517425 98517538 -23326318 - B2_Mm2 SINE B2 -7 188 47 4 1336 1135 156 11 0 chr11 98517601 98517781 -23326075 - B2_Mm1t SINE B2 -11 182 1 4 1336 21 0 0 0 chr11 98517790 98517811 -23326045 + AT_rich Low_complexity Low_complexity 1 21 0 4 1336 774 204 21 7 chr11 98518096 98518239 -23325617 - B1_Mur1 SINE Alu -2 147 3 4 1336 480 168 0 0 chr11 98518311 98518412 -23325444 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 4 1336 198 0 0 0 chr11 98518477 98518499 -23325357 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 1336 289 194 122 51 chr11 98519123 98519221 -23324635 + MT2B LTR ERVL 153 257 -344 4 1336 582 160 182 16 chr11 98519136 98519257 -23324599 + B1_Mur4 SINE Alu 9 149 -1 4 1336 28 48 0 0 chr11 98519257 98519299 -23324557 + AT_rich Low_complexity Low_complexity 1 42 0 4 1336 444 135 0 0 chr11 98519516 98519590 -23324266 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1336 632 246 22 43 chr11 98520220 98520444 -23323412 + ID_B1 SINE B4 73 292 0 5 1336 252 185 0 0 chr11 98520444 98520498 -23323358 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1336 2796 61 0 23 chr11 98520519 98520873 -23322983 + ORR1A1 LTR MaLR 1 346 0 5 1336 419 250 36 0 chr11 98521349 98521433 -23322423 + PB1D10 SINE Alu 4 90 -27 5 1336 345 133 0 39 chr11 98521435 98521513 -23322343 + GA-rich Low_complexity Low_complexity 3 77 0 5 1336 276 130 0 0 chr11 98521972 98522018 -23321838 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1336 356 324 46 0 chr11 98522278 98522386 -23321470 + B3A SINE B2 76 188 -10 5 1336 489 119 0 49 chr11 98522361 98522468 -23321388 + B1_Mus2 SINE Alu 52 149 -1 5 1336 1199 135 0 25 chr11 98522481 98522679 -23321177 + B2_Mm2 SINE B2 3 195 0 5 1336 452 300 100 0 chr11 98522681 98522821 -23321035 + B3A SINE B2 45 198 0 6 1336 1151 150 0 26 chr11 98522852 98523044 -23320812 + B2_Mm2 SINE B2 2 188 -7 6 1336 295 280 12 33 chr11 98523054 98523076 -23320780 + PB1D10 SINE Alu 1 64 -53 6 1336 303 294 0 0 chr11 98523076 98523144 -23320712 + ID_B1 SINE B4 105 172 -52 6 1336 1241 35 7 0 chr11 98523218 98523362 -23320494 - B1_Mus2 SINE Alu -1 146 2 6 1336 431 239 41 74 chr11 98523422 98523544 -23320312 + RSINE1 SINE B4 47 164 -1 6 1336 207 204 0 0 chr11 98523553 98523602 -23320254 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1336 1104 108 0 0 chr11 98524654 98524811 -23319045 + B2_Mm2 SINE B2 1 157 -38 6 1336 636 14 0 0 chr11 98524811 98524884 -23318972 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 1336 228 224 0 0 chr11 98525325 98525392 -23318464 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1336 186 294 176 0 chr11 98526318 98526386 -23317470 - MIRm SINE MIR -38 238 159 7 1336 428 338 79 23 chr11 98526328 98526543 -23317313 - L2c LINE L2 -45 3342 3116 7 1336 324 0 0 0 chr11 98526586 98526622 -23317234 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 7 1336 845 90 0 0 chr11 98526638 98526749 -23317107 - B2_Mm2 SINE B2 -83 112 2 7 1336 539 57 0 0 chr11 98528569 98528639 -23315217 + B2_Mm2 SINE B2 1 70 -125 7 1336 954 136 7 33 chr11 98528652 98528804 -23315052 + B1_Mus1 SINE Alu 1 148 0 7 1336 189 327 59 0 chr11 98528878 98528979 -23314877 - L2c LINE L2 -217 3170 3064 7 1336 882 199 5 64 chr11 98529709 98529897 -23313959 + B3A SINE B2 1 177 -21 7 1336 567 134 0 0 chr11 98529901 98530020 -23313836 + (TC)n Simple_repeat Simple_repeat 1 119 0 7 1336 217 333 10 40 chr11 98530297 98530397 -23313459 - L2c LINE L2 -1507 1912 1816 7 1336 291 254 0 0 chr11 98530499 98530558 -23313298 - MIRb SINE MIR -92 176 118 7 1336 222 0 51 26 chr11 98530671 98530710 -23313146 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 8 1336 725 169 76 15 chr11 98530725 98530857 -23312999 + B1_Mur3 SINE Alu 5 144 -5 8 1336 552 224 0 0 chr11 98531262 98531360 -23312496 + PB1D10 SINE Alu 2 99 -18 8 1336 1330 86 11 6 chr11 98531690 98531866 -23311990 + B2_Mm2 SINE B2 1 177 -18 8 1336 745 215 0 16 chr11 98535135 98535380 -23308476 + (TATATG)n Simple_repeat Simple_repeat 1 241 0 8 1336 357 264 0 0 chr11 98535365 98535475 -23308381 + (TA)n Simple_repeat Simple_repeat 1 110 0 8 1336 307 374 11 39 chr11 98535483 98535659 -23308197 - L1MC4a LINE L1 -1203 6679 6509 8 1336 1222 61 0 0 chr11 98535659 98535806 -23308050 - B1_Mus2 SINE Alu 0 147 1 8 1336 1118 88 0 26 chr11 98536052 98536204 -23307652 + B1_Mus1 SINE Alu 1 148 0 8 1336 498 239 88 22 chr11 98536227 98536364 -23307492 + RSINE1 SINE B4 12 157 -8 8 1336 782 197 7 0 chr11 98536417 98536564 -23307292 + B1_Mur1 SINE Alu 1 148 -1 9 1336 638 223 27 48 chr11 98536637 98536783 -23307073 + B1F SINE Alu 7 149 0 9 1336 811 190 21 7 chr11 98536835 98536978 -23306878 - B1_Mur1 SINE Alu -2 147 3 9 1336 234 246 0 0 chr11 98537047 98537104 -23306752 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 9 1336 245 195 51 25 chr11 98538009 98538088 -23305768 + 4.5SRNA scRNA scRNA 6 86 -8 9 1336 741 93 9 9 chr11 98538039 98538147 -23305709 + B1_Mur4 SINE Alu 43 150 0 9 1336 216 0 0 0 chr11 98538188 98538212 -23305644 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1336 252 0 0 0 chr11 98538583 98538611 -23305245 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 1336 1308 164 27 5 chr11 98538660 98538881 -23304975 + URR1A DNA MER1_type 1 226 0 9 1336 963 188 22 22 chr11 98539239 98539424 -23304432 - B3 SINE B2 -27 189 5 9 1336 492 18 0 0 chr11 98539424 98539481 -23304375 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1336 486 234 139 39 chr11 98540063 98540192 -23303664 + RSINE1 SINE B4 2 143 -22 1 1336 219 319 101 53 chr11 98540075 98540244 -23303612 + B2_Mm2 SINE B2 11 187 -8 1 1336 854 190 207 0 chr11 98540250 98540424 -23303432 + B3 SINE B2 2 211 -5 1 1336 715 186 14 63 chr11 98540443 98540586 -23303270 + B1_Mus1 SINE Alu 1 136 -12 1 1336 249 57 0 0 chr11 98540587 98540622 -23303234 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1336 741 65 0 0 chr11 98540639 98540747 -23303109 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 1336 386 230 31 117 chr11 98540753 98540881 -23302975 + PB1D9 SINE Alu 1 117 -3 1 1336 701 191 19 0 chr11 98541345 98541507 -23302349 + (ATGGTG)n Simple_repeat Simple_repeat 6 170 0 1 1336 600 197 20 47 chr11 98541521 98541670 -23302186 - RSINE1 SINE B4 -18 147 3 1 1336 1788 144 61 38 chr11 98541784 98542130 -23301726 - ORR1B1 LTR MaLR 0 394 41 1 1336 2760 86 0 16 chr11 98542165 98542545 -23301311 + L1_Mus2 LINE L1 6193 6566 0 1 1336 309 245 160 0 chr11 98542566 98542660 -23301196 + PB1D10 SINE Alu 9 117 0 1 1336 665 197 51 7 chr11 98542688 98542826 -23301030 - RSINE1 SINE B4 -20 145 2 1 1336 642 156 130 8 chr11 98542846 98542969 -23300887 - B1_Mur3 SINE Alu 0 149 12 1 1336 944 163 0 7 chr11 98543035 98543183 -23300673 - B1_Mur3 SINE Alu -1 148 2 1 1336 333 0 0 0 chr11 98545036 98545073 -23298783 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1336 924 222 45 20 chr11 98545936 98546134 -23297722 - B3 SINE B2 -13 203 1 1 1336 443 287 50 0 chr11 98547489 98547590 -23296266 + PB1D10 SINE Alu 1 106 -11 1 1336 306 190 35 0 chr11 98547635 98547693 -23296163 + PB1D9 SINE Alu 1 60 -60 1 1336 730 246 54 0 chr11 98547766 98547949 -23295907 + B3 SINE B2 1 194 -4 1 1336 317 294 106 41 chr11 98548244 98548414 -23295442 - L1MB7 LINE L1 -84 6100 5920 1 1336 297 289 47 0 chr11 98548824 98548952 -23294904 - L1MB7 LINE L1 -453 5721 5588 1 1336 958 222 207 12 chr11 98549227 98549546 -23294310 - ORR1C2 LTR MaLR 0 384 4 1 1336 184 238 227 16 chr11 98549859 98549987 -23293869 + L2b LINE L2 2931 3085 -290 1 1336 1228 68 0 0 chr11 98550007 98550154 -23293702 - B1_Mus2 SINE Alu 0 147 1 1 1336 3323 28 3 0 chr11 98550175 98550563 -23293293 - L1Md_F3 LINE L1 0 6584 6196 1 1336 512 278 118 0 chr11 98550618 98550762 -23293094 + RSINE1 SINE B4 3 163 -2 1 1336 1402 102 0 5 chr11 98550804 98551000 -23292856 - B2_Mm2 SINE B2 0 195 1 1 1336 421 294 37 0 chr11 98551062 98551171 -23292685 + RSINE1 SINE B4 13 125 -40 1 1336 379 298 100 63 chr11 98551424 98551460 -23292396 - B4 SINE B4 -30 262 146 1 1336 671 182 76 0 chr11 98551460 98551592 -23292264 - B1_Mur3 SINE Alu -1 148 7 1 1336 667 229 26 46 chr11 98551592 98551743 -23292113 - B1_Mur1 SINE Alu 0 149 2 1 1336 379 298 100 63 chr11 98551592 98551614 -23292242 - B4 SINE B4 -30 145 66 1 1336 380 173 59 76 chr11 98553017 98553136 -23290720 + PB1D10 SINE Alu 1 117 0 1 1336 430 218 218 0 chr11 98553570 98553680 -23290176 - B1_Mus1 SINE Alu -11 137 4 1 1336 279 362 20 72 chr11 98553882 98554034 -23289822 + B1_Mus2 SINE Alu 3 146 -1 1 1336 264 316 35 9 chr11 98554032 98554147 -23289709 - MLT1D LTR MaLR -57 448 331 1 1336 200 111 28 0 chr11 98554229 98554265 -23289591 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1336 493 200 42 0 chr11 98554276 98554371 -23289485 - B1_Mur2 SINE Alu -38 111 13 1 1336 730 234 30 12 chr11 98554361 98554530 -23289326 - B3A SINE B2 -25 173 2 1 1336 1234 55 0 0 chr11 98556222 98556367 -23287489 + B1_Mus2 SINE Alu 3 147 0 1 1336 271 325 107 8 chr11 98556369 98556490 -23287366 + B4 SINE B4 72 204 -88 1 1336 608 213 16 0 chr11 98556386 98556508 -23287348 + B1_Mur2 SINE Alu 10 133 -16 1 1336 396 0 0 0 chr11 98556518 98556562 -23287294 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 1 1336 443 269 18 9 chr11 98557605 98557714 -23286142 + ID_B1 SINE B4 8 117 -107 1 1336 228 206 206 0 chr11 98558505 98558568 -23285288 - B1_Mur1 SINE Alu 0 149 74 1 1336 329 226 281 31 chr11 98558890 98559050 -23284806 + B3 SINE B2 3 202 -14 1 1336 317 229 3 7 chr11 98559064 98559147 -23284709 + ID4_ SINE ID 11 92 -60 1 1336 345 186 0 0 chr11 98559290 98559349 -23284507 - ID_B1 SINE B4 -22 202 144 1 1336 774 179 57 0 chr11 98559550 98559690 -23284166 - B1_Mur4 SINE Alu -2 148 1 1 1336 1578 275 178 37 chr11 98559707 98560539 -23283317 - Lx8 LINE L1 -179 7294 6346 1 1336 320 250 114 0 chr11 98560561 98560649 -23283207 - PB1D10 SINE Alu -16 101 4 1 1336 701 254 7 0 chr11 98560649 98560729 -23283127 - ID SINE ID -140 84 4 1 1336 866 149 17 51 chr11 98560899 98561076 -23282780 - URR1A DNA MER1_type -2 224 54 1 1336 1132 62 7 27 chr11 98561144 98561293 -23282563 + B1_Mus2 SINE Alu 2 147 0 1 1336 825 155 0 0 chr11 98563465 98563613 -23280243 + GA-rich Low_complexity Low_complexity 3 150 0 1 1337 225 94 0 0 chr11 98569708 98569740 -23274116 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1337 1207 277 48 0 chr11 98569959 98570313 -23273543 + L1MB2 LINE L1 5799 6169 -2 1 1337 269 224 149 23 chr11 98572794 98572881 -23270975 + PB1D7 SINE Alu 5 102 -18 1 1337 657 177 84 8 chr11 98572966 98573097 -23270759 + B1_Mm SINE Alu 7 147 0 1 1337 21 57 0 0 chr11 98573210 98573245 -23270611 + AT_rich Low_complexity Low_complexity 1 35 0 1 1337 1607 47 0 15 chr11 98573245 98573440 -23270416 - B2_Mm1t SINE B2 -1 192 1 1 1337 664 198 178 43 chr11 98573445 98573630 -23270226 - B3 SINE B2 -5 211 2 1 1337 417 296 19 0 chr11 98574617 98574725 -23269131 - PB1D7 SINE Alu 0 120 11 1 1337 230 320 13 26 chr11 98574779 98574856 -23269000 - MurSatRep1 Unknown Unknown -1860 277 202 1 1337 1018 67 0 0 chr11 98576135 98576270 -23267586 + B1_Mus2 SINE Alu 13 147 0 1 1337 392 213 37 135 chr11 98576137 98576300 -23267556 + B4A SINE B4 100 246 -46 1 1337 285 29 0 0 chr11 98576300 98576334 -23267522 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1337 938 90 0 0 chr11 98577235 98577368 -23266488 + B1_Mus1 SINE Alu 16 148 0 1 1337 369 0 0 0 chr11 98577645 98577686 -23266170 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1337 318 302 15 73 chr11 98578900 98579036 -23264820 + L2a LINE L2 3296 3423 -3 1 1337 218 288 91 0 chr11 98580575 98580641 -23263215 + ID4_ SINE ID 2 73 -10 1 1337 989 106 42 0 chr11 98580720 98580862 -23262994 + B1_Mur4 SINE Alu 2 149 -1 1 1337 292 190 22 112 chr11 98580889 98580978 -23262878 + ID4_ SINE ID 1 81 -2 1 1337 309 349 19 0 chr11 98580997 98581103 -23262753 + PB1 SINE Alu 5 112 -15 1 1337 316 128 135 69 chr11 98581311 98581402 -23262454 + PB1D10 SINE Alu 31 148 -1 1 1337 230 282 127 0 chr11 98581431 98581502 -23262354 + ID4_ SINE ID 4 83 0 1 1337 34 0 0 0 chr11 98581506 98581540 -23262316 + AT_rich Low_complexity Low_complexity 1 34 0 1 1337 453 184 76 34 chr11 98581540 98581658 -23262198 - B3 SINE B2 0 216 94 1 1337 940 87 0 14 chr11 98581664 98581804 -23262052 - B1_Mur4 SINE Alu 0 150 13 1 1337 379 242 16 116 chr11 98581701 98581878 -23261978 - MT2B LTR ERVL -320 264 92 1 1337 459 266 94 0 chr11 98582183 98582268 -23261588 + RSINE1 SINE B4 11 100 -65 1 1337 207 0 0 0 chr11 98582268 98582291 -23261565 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 1 1337 459 266 94 0 chr11 98582291 98582333 -23261523 + RSINE1 SINE B4 101 149 -16 1 1337 181 364 0 0 chr11 98582432 98582498 -23261358 + L2c LINE L2 3281 3346 -41 1 1337 237 348 50 0 chr11 98583659 98583800 -23260056 + L2 LINE L2 1881 2028 -1391 1 1337 283 321 76 88 chr11 98584126 98584389 -23259467 + ORR1E LTR MaLR 82 341 -18 1 1337 461 147 0 0 chr11 98584669 98584744 -23259112 - URR1B DNA MER1_type 0 225 151 1 1337 475 263 35 77 chr11 98584728 98584752 -23259104 + ID_B1 SINE B4 63 221 0 1 1337 744 218 7 0 chr11 98584752 98584894 -23258962 + B1_Mus2 SINE Alu 5 147 0 1 1337 411 173 29 9 chr11 98584898 98585003 -23258853 + GA-rich Low_complexity Low_complexity 1 107 0 1 1337 295 237 66 0 chr11 98585055 98585131 -23258725 + ID4 SINE ID 2 82 -1 1 1337 313 248 9 114 chr11 98585231 98585345 -23258511 + B3A SINE B2 97 198 0 1 1337 318 282 45 68 chr11 98585323 98585456 -23258400 + B4A SINE B4 65 194 -98 1 1337 797 112 16 0 chr11 98585357 98585482 -23258374 + B1_Mus1 SINE Alu 6 132 -16 1 1337 324 313 70 47 chr11 98585802 98585973 -23257883 + L1ME2 LINE L1 5952 6126 -38 1 1337 322 276 109 29 chr11 98586198 98586336 -23257520 - B4 SINE B4 -96 196 48 1 1337 381 22 0 0 chr11 98586349 98586395 -23257461 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1337 422 248 54 18 chr11 98586548 98586659 -23257197 + PB1D7 SINE Alu 6 120 0 1 1337 758 106 118 22 chr11 98586663 98586798 -23257058 + B1_Mus1 SINE Alu 1 148 0 1 1337 278 337 32 0 chr11 98586843 98586938 -23256918 + Charlie1 DNA MER1_type 1 98 -2683 1 1337 393 273 152 0 chr11 98586940 98587072 -23256784 + RSINE1 SINE B4 14 165 0 1 1337 350 285 54 3 chr11 98587084 98587271 -23256585 + Charlie1 DNA MER1_type 2063 2166 -615 1 1337 404 280 10 0 chr11 98587306 98587406 -23256450 + PB1D10 SINE Alu 15 115 -2 1 1337 789 172 8 0 chr11 98588454 98588582 -23255274 + B1_Mus2 SINE Alu 3 131 -16 2 1337 279 0 0 0 chr11 98588616 98588647 -23255209 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1337 241 250 0 0 chr11 98588649 98588705 -23255151 - ID SINE ID -167 57 2 2 1337 471 222 0 0 chr11 98588823 98588904 -23254952 - ID4 SINE ID -1 82 2 2 1337 307 356 62 28 chr11 98588940 98589119 -23254737 + L2c LINE L2 3034 3218 -169 2 1337 272 222 15 60 chr11 98589259 98589326 -23254530 + BC1_Mm scRNA scRNA 8 71 -81 2 1337 366 250 196 8 chr11 98589269 98589402 -23254454 + ID_B1 SINE B4 14 171 -53 2 1337 311 216 40 0 chr11 98589351 98589425 -23254431 + PB1D10 SINE Alu 40 116 -1 2 1337 1167 75 0 0 chr11 98589544 98589691 -23254165 - B1_Mm SINE Alu 0 147 1 2 1337 186 103 0 0 chr11 98590358 98590387 -23253469 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1337 809 157 49 21 chr11 98591297 98591440 -23252416 + B1_Mus2 SINE Alu 1 147 0 2 1337 206 32 0 31 chr11 98591451 98591483 -23252373 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1337 1669 26 5 0 chr11 98591542 98591734 -23252122 + B2_Mm1a SINE B2 1 193 0 2 1337 23 0 0 0 chr11 98593143 98593166 -23250690 + AT_rich Low_complexity Low_complexity 1 23 0 2 1337 209 208 0 20 chr11 98593166 98593215 -23250641 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1337 949 247 121 51 chr11 98593217 98593490 -23250366 - B4A SINE B4 0 292 1 2 1337 867 131 0 0 chr11 98593496 98593626 -23250230 - B1_Mus2 SINE Alu -7 140 11 2 1337 226 269 149 0 chr11 98593654 98593721 -23250135 - B1_Mm SINE Alu -6 141 65 2 1337 811 137 50 0 chr11 98593729 98593868 -23249988 + B1_Mus1 SINE Alu 3 148 0 2 1337 202 29 28 28 chr11 98593871 98593907 -23249949 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1337 523 272 106 15 chr11 98594158 98594356 -23249500 + B3 SINE B2 1 216 0 2 1337 1367 85 15 45 chr11 98594377 98594575 -23249281 + B2_Mm2 SINE B2 2 193 -2 2 1337 1116 191 14 24 chr11 98594901 98595110 -23248746 + B3 SINE B2 3 209 -7 2 1337 712 153 0 31 chr11 98595122 98595250 -23248606 + B1_Mus2 SINE Alu 24 147 0 2 1337 269 306 21 121 chr11 98595419 98595444 -23248412 - B1F SINE Alu -1 148 124 2 1337 1076 238 29 0 chr11 98595444 98595654 -23248202 - B3 SINE B2 0 216 1 2 1337 269 306 21 121 chr11 98595654 98595769 -23248087 - B1F SINE Alu -26 123 22 2 1337 612 254 94 36 chr11 98596006 98596198 -23247658 - B4 SINE B4 -10 282 80 2 1337 253 306 70 35 chr11 98596205 98596320 -23247536 - PB1D9 SINE Alu -1 119 1 2 1337 294 319 71 82 chr11 98596320 98596418 -23247438 - B4 SINE B4 -195 97 2 2 1337 25 0 0 0 chr11 98596829 98596854 -23247002 + AT_rich Low_complexity Low_complexity 1 25 0 2 1337 1212 48 0 20 chr11 98596854 98597004 -23246852 - B1_Mus2 SINE Alu 0 147 1 2 1337 324 143 0 0 chr11 98597135 98597191 -23246665 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1337 1195 54 0 13 chr11 98597237 98597386 -23246470 - B1_Mm SINE Alu 0 147 1 2 1337 600 268 48 6 chr11 98597598 98597763 -23246093 + B3 SINE B2 38 209 -7 2 1337 439 223 0 88 chr11 98597780 98597893 -23245963 + B1_Mus2 SINE Alu 32 134 -13 2 1337 1254 80 108 0 chr11 98597894 98598070 -23245786 + B2_Mm2 SINE B2 1 195 0 2 1337 888 62 23 0 chr11 98598070 98598199 -23245657 + B1_Mus1 SINE Alu 15 146 -2 2 1337 341 183 37 0 chr11 98598334 98598416 -23245440 + CT-rich Low_complexity Low_complexity 4 88 0 2 1337 1073 103 14 0 chr11 98598428 98598574 -23245282 + B1_Mus1 SINE Alu 1 148 0 2 1337 217 132 0 0 chr11 98598575 98598613 -23245243 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1337 790 65 0 0 chr11 98598812 98598919 -23244937 - B1_Mus2 SINE Alu 0 147 41 2 1337 285 180 0 32 chr11 98598870 98598933 -23244923 - 4.5SRNA scRNA scRNA -8 86 26 2 1337 219 167 0 0 chr11 98598977 98599019 -23244837 + T-rich Low_complexity Low_complexity 1 42 0 2 1337 625 185 17 0 chr11 98599053 98599172 -23244684 - B1_Mur1 SINE Alu -5 144 24 2 1337 289 192 63 108 chr11 98599075 98599186 -23244670 - MT2B LTR ERVL -323 278 173 2 1337 258 331 58 75 chr11 98599186 98599218 -23244638 - B4 SINE B4 -63 199 60 2 1337 708 233 0 0 chr11 98599227 98599360 -23244496 - RSINE1 SINE B4 -30 135 3 2 1337 858 237 45 15 chr11 98599390 98599591 -23244265 - B3 SINE B2 -7 209 3 2 1337 188 67 0 32 chr11 98600013 98600044 -23243812 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 2 1337 341 58 19 0 chr11 98600264 98600316 -23243540 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1337 314 188 25 172 chr11 98600758 98600880 -23242976 + PB1D9 SINE Alu 10 113 -7 2 1337 1164 48 0 52 chr11 98600886 98601041 -23242815 + B1_Mm SINE Alu 1 147 0 2 1337 198 0 0 0 chr11 98601041 98601063 -23242793 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1337 343 38 38 0 chr11 98602144 98602197 -23241659 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1337 244 326 125 7 chr11 98602575 98602711 -23241145 - MIR3 SINE MIR -6 202 51 2 1337 201 259 26 61 chr11 98602916 98603031 -23240825 + G-rich Low_complexity Low_complexity 2 112 0 2 1337 23 33 0 0 chr11 98603218 98603248 -23240608 + GC_rich Low_complexity Low_complexity 1 30 0 2 1337 21 0 0 0 chr11 98603655 98603676 -23240180 + GC_rich Low_complexity Low_complexity 1 21 0 2 1337 369 0 0 0 chr11 98604022 98604063 -23239793 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1337 203 369 18 26 chr11 98604996 98605110 -23238746 + L2c LINE L2 3273 3385 -2 2 1337 386 264 107 0 chr11 98606796 98606917 -23236939 + MIRb SINE MIR 36 169 -99 2 1337 304 277 128 0 chr11 98606949 98607043 -23236813 + ID_B1 SINE B4 118 223 -1 2 1337 252 193 191 12 chr11 98607976 98608060 -23235796 + MIRc SINE MIR 2 100 -168 2 1337 406 270 0 7 chr11 98608127 98608227 -23235629 + ID4 SINE ID 6 102 -50 2 1337 494 103 0 13 chr11 98608977 98609056 -23234800 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 2 1337 198 0 0 0 chr11 98609056 98609078 -23234778 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1337 345 47 0 0 chr11 98609094 98609137 -23234719 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 2 1337 286 341 22 16 chr11 98610732 98610926 -23232930 + CT-rich Low_complexity Low_complexity 1 195 0 2 1337 234 0 0 0 chr11 98611029 98611055 -23232801 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1337 341 224 53 53 chr11 98613186 98613318 -23230538 + MIRm SINE MIR 17 148 -128 2 1337 537 276 17 0 chr11 98613350 98613466 -23230390 - PB1D7 SINE Alu 0 120 3 2 1337 180 0 0 0 chr11 98613485 98613505 -23230351 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1337 543 273 25 0 chr11 98613505 98613626 -23230230 - ID_B1 SINE B4 -3 221 98 2 1337 826 196 0 20 chr11 98613825 98613976 -23229880 + B1_Mur1 SINE Alu 1 148 -1 2 1337 354 45 0 0 chr11 98616934 98616978 -23226878 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1337 431 320 8 0 chr11 98617837 98617962 -23225894 + PB1 SINE Alu 2 127 0 2 1337 256 306 161 10 chr11 98618486 98618637 -23225219 + MIRb SINE MIR 61 237 -31 2 1337 263 206 12 110 chr11 98618758 98618840 -23225016 + MT2B2 LTR ERVL 169 242 -342 2 1337 408 297 30 0 chr11 98618773 98618874 -23224982 + B1F SINE Alu 18 121 -28 2 1337 595 272 7 0 chr11 98618874 98619021 -23224835 + B1_Mur1 SINE Alu 2 149 0 2 1337 960 239 32 105 chr11 98619145 98619375 -23224481 + B4A SINE B4 1 222 -70 2 1337 1421 40 90 0 chr11 98619375 98619534 -23224322 + B2_Mm1a SINE B2 1 160 -33 2 1337 252 0 0 0 chr11 98619534 98619562 -23224294 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2 1337 1421 40 90 0 chr11 98619562 98619579 -23224277 + B2_Mm1a SINE B2 161 191 -2 2 1337 960 239 32 105 chr11 98619579 98619662 -23224194 + B4A SINE B4 223 291 -1 2 1337 193 320 13 13 chr11 98619756 98619832 -23224024 + MER5A DNA MER1_type 92 167 -22 2 1337 508 220 152 0 chr11 98620034 98620152 -23223704 + ID_B1 SINE B4 79 214 -10 2 1337 273 254 21 159 chr11 98620152 98620174 -23223682 + MT2B LTR ERVL 160 279 -322 2 1337 1462 50 67 0 chr11 98620174 98620354 -23223502 - B2_Mm2 SINE B2 -3 192 1 2 1337 926 110 0 14 chr11 98620354 98620492 -23223364 + B1_Mus2 SINE Alu 12 147 0 2 1337 185 289 64 26 chr11 98620857 98620935 -23222921 + MIR SINE MIR 172 252 -10 2 1337 320 0 0 24 chr11 98621003 98621044 -23222812 + (TAG)n Simple_repeat Simple_repeat 1 40 0 2 1337 899 35 9 0 chr11 98621044 98621159 -23222697 + (GAA)n Simple_repeat Simple_repeat 3 118 0 2 1337 826 244 79 10 chr11 98621329 98621532 -23222324 + ID_B1 SINE B4 2 218 -6 2 1337 1190 74 0 0 chr11 98621550 98621698 -23222158 - B1_Mus1 SINE Alu 0 148 1 2 1337 618 222 21 7 chr11 98621712 98621857 -23221999 - B1_Mur4 SINE Alu -2 148 2 2 1337 1227 106 36 26 chr11 98622473 98622666 -23221190 - B2_Mm2 SINE B2 0 195 1 2 1337 1262 28 7 0 chr11 98623756 98623901 -23219955 + B1_Mm SINE Alu 1 146 -1 2 1337 261 0 0 0 chr11 98624527 98624556 -23219300 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1337 346 291 32 15 chr11 98624627 98624774 -23219082 + MIR SINE MIR 75 226 -42 2 1337 231 36 0 0 chr11 98626306 98626334 -23217522 + (GCTTG)n Simple_repeat Simple_repeat 3 30 0 2 1337 198 128 0 0 chr11 98626427 98626466 -23217390 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1337 288 0 0 0 chr11 98627333 98627365 -23216491 + (TCC)n Simple_repeat Simple_repeat 1 32 0 3 1337 225 94 0 0 chr11 98627391 98627423 -23216433 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1337 738 0 0 0 chr11 98627677 98627759 -23216097 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1337 488 298 149 34 chr11 98630021 98630316 -23213540 + L2b LINE L2 3039 3367 -8 3 1337 214 240 0 0 chr11 98633193 98633243 -23210613 + GA-rich Low_complexity Low_complexity 3 52 0 3 1337 189 398 9 44 chr11 98634648 98634761 -23209095 + MIR SINE MIR 40 148 -60 3 1337 240 333 20 29 chr11 98637409 98637453 -23206403 + B4A SINE B4 44 86 -206 3 1337 483 267 0 0 chr11 98637453 98637554 -23206302 + B1F SINE Alu 2 102 -47 3 1337 225 250 108 15 chr11 98638017 98638082 -23205774 + PB1 SINE Alu 41 111 -16 3 1337 300 245 42 83 chr11 98638954 98639074 -23204782 - PB1D10 SINE Alu 0 117 3 3 1337 213 39 0 0 chr11 98639147 98639173 -23204683 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1337 1005 204 102 0 chr11 98639390 98639586 -23204270 + B3 SINE B2 1 216 0 3 1337 477 235 21 64 chr11 98639618 98639759 -23204097 + B1F SINE Alu 1 135 -14 3 1337 234 62 0 0 chr11 98639759 98639791 -23204065 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 3 1337 951 152 0 0 chr11 98639858 98640036 -23203820 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 1337 1202 186 0 40 chr11 98640276 98640500 -23203356 + B3 SINE B2 2 216 0 3 1337 968 117 66 0 chr11 98640514 98640651 -23203205 + B1_Mus1 SINE Alu 1 146 -2 3 1337 510 289 26 19 chr11 98641393 98641548 -23202308 - MIRb SINE MIR -18 250 95 3 1337 225 0 0 0 chr11 98642018 98642043 -23201813 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1337 1388 75 26 26 chr11 98642049 98642241 -23201615 + B2_Mm2 SINE B2 1 192 -3 3 1337 1170 64 0 0 chr11 98642413 98642554 -23201302 + B1_Mus2 SINE Alu 1 141 -6 3 1337 217 0 0 57 chr11 98642557 98642592 -23201264 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1337 466 261 100 0 chr11 98642596 98642726 -23201130 + B1_Mur1 SINE Alu 1 143 -6 3 1337 294 29 0 0 chr11 98642730 98642765 -23201091 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 3 1337 207 288 0 0 chr11 98643416 98643482 -23200374 + G-rich Low_complexity Low_complexity 1 66 0 3 1337 207 88 0 0 chr11 98643815 98643849 -23200007 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1337 366 263 76 55 chr11 98645204 98645349 -23198507 + MER5A DNA MER1_type 18 165 -24 3 1337 225 303 12 84 chr11 98645796 98645879 -23197977 + MT2B LTR ERVL 162 238 -363 3 1337 457 241 28 0 chr11 98645808 98645916 -23197940 + PB1D9 SINE Alu 10 120 0 3 1337 985 201 27 59 chr11 98646029 98646251 -23197605 - B3 SINE B2 0 216 2 3 1337 781 154 0 0 chr11 98646884 98647004 -23196852 - B1_Mus1 SINE Alu -12 136 17 3 1337 207 0 0 0 chr11 98647004 98647027 -23196829 + (CCA)n Simple_repeat Simple_repeat 2 24 0 3 1337 361 278 69 83 chr11 98647036 98647050 -23196806 - B4 SINE B4 -192 100 74 3 1337 608 188 68 0 chr11 98648721 98648838 -23195018 - B3 SINE B2 -65 151 27 3 1337 949 165 10 74 chr11 98649160 98649363 -23194493 + B2_Mm2 SINE B2 3 192 -3 3 1337 744 194 45 0 chr11 98649395 98649529 -23194327 - B1_Mus2 SINE Alu -6 141 2 3 1337 379 248 148 0 chr11 98650063 98650164 -23193692 - B1_Mur1 SINE Alu -1 148 33 3 1337 369 0 0 0 chr11 98650528 98650569 -23193287 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1337 416 231 197 8 chr11 98651314 98651436 -23192420 - B1_Mur1 SINE Alu 0 149 5 3 1337 308 238 175 19 chr11 98651548 98651651 -23192205 + PB1D7 SINE Alu 2 120 0 3 1337 1184 62 0 7 chr11 98651875 98652022 -23191834 + B1_Mm SINE Alu 1 146 -1 3 1337 248 312 26 0 chr11 98652100 98652177 -23191679 + B1F SINE Alu 71 149 0 3 1337 207 0 0 0 chr11 98652453 98652476 -23191380 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 1337 774 63 120 45 chr11 98652476 98652600 -23191256 - B1_Mus1 SINE Alu -6 142 6 3 1337 445 207 90 0 chr11 98652659 98652770 -23191086 + B1_Mur2 SINE Alu 29 149 0 3 1337 932 164 108 16 chr11 98652792 98652978 -23190878 - B3 SINE B2 -7 209 7 3 1337 690 209 32 147 chr11 98653023 98653275 -23190581 + ID_B1 SINE B4 2 224 0 3 1337 293 317 57 68 chr11 98653275 98653451 -23190405 + MER58B DNA MER1_type 145 318 -23 3 1337 336 270 110 0 chr11 98653473 98653573 -23190283 + PB1D10 SINE Alu 1 111 -6 3 1337 268 333 35 0 chr11 98653623 98653710 -23190146 - MER5A DNA MER1_type -77 112 23 3 1337 380 265 7 111 chr11 98653712 98653865 -23189991 - RSINE1 SINE B4 -28 137 1 3 1337 233 325 76 8 chr11 98653964 98654082 -23189774 - RSINE1 SINE B4 -37 128 3 3 1337 310 257 0 54 chr11 98654084 98654158 -23189698 - ID SINE ID -141 83 14 3 1337 320 289 124 21 chr11 98654987 98655132 -23188724 - L2 LINE L2 -973 2446 2287 3 1337 604 212 80 0 chr11 98655393 98655530 -23188326 - B1_Mur2 SINE Alu -1 148 1 3 1337 330 288 24 8 chr11 98656281 98656407 -23187449 + C-rich Low_complexity Low_complexity 2 129 0 3 1337 257 269 47 27 chr11 98656707 98656856 -23187000 + G-rich Low_complexity Low_complexity 2 153 0 3 1337 270 202 59 12 chr11 98656747 98656832 -23187024 + (CGGGG)n Simple_repeat Simple_repeat 2 90 0 3 1337 180 179 0 0 chr11 98656878 98656917 -23186939 + (CGG)n Simple_repeat Simple_repeat 3 41 0 3 1337 264 186 0 41 chr11 98657053 98657126 -23186730 + C-rich Low_complexity Low_complexity 2 71 0 3 1337 314 195 11 135 chr11 98659954 98660043 -23183813 + ID4_ SINE ID 2 79 -4 3 1337 496 243 45 0 chr11 98660807 98660918 -23182938 + PB1D7 SINE Alu 5 120 0 3 1337 764 52 278 0 chr11 98661152 98661267 -23182589 - B1_Mus1 SINE Alu 0 148 2 3 1337 321 306 20 0 chr11 98664230 98664328 -23179528 + PB1 SINE Alu 20 119 -8 3 1337 315 125 319 18 chr11 98664407 98664520 -23179336 - B2_Mm2 SINE B2 -2 193 47 3 1337 1215 88 53 0 chr11 98664552 98664722 -23179134 - B2_Mm1t SINE B2 -14 179 1 3 1337 798 241 15 49 chr11 98665772 98665977 -23177879 + B3A SINE B2 1 198 0 3 1337 201 156 0 0 chr11 98666075 98666107 -23177749 + (TGG)n Simple_repeat Simple_repeat 3 34 0 3 1337 1287 27 0 0 chr11 98666394 98666541 -23177315 - B1_Mus2 SINE Alu 0 147 1 3 1337 324 102 0 0 chr11 98667734 98667783 -23176073 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1337 501 17 0 0 chr11 98668212 98668270 -23175586 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1337 261 0 0 0 chr11 98668439 98668468 -23175388 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1337 253 256 103 11 chr11 98669694 98669730 -23174126 + PB1D10 SINE Alu 23 117 0 3 1337 294 196 0 0 chr11 98669730 98669781 -23174075 + ID_B1 SINE B4 173 223 -1 3 1337 214 238 82 59 chr11 98669826 98669911 -23173945 + PB1D10 SINE Alu 31 117 0 3 1337 255 230 11 22 chr11 98671259 98671348 -23172508 + (CGG)n Simple_repeat Simple_repeat 1 88 0 3 1337 1050 65 7 0 chr11 98672682 98672820 -23171036 + B1_Mus1 SINE Alu 10 148 0 3 1337 255 31 0 0 chr11 98672822 98672854 -23171002 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1337 1113 102 0 0 chr11 98673323 98673470 -23170386 + B1_Mus2 SINE Alu 1 147 0 3 1337 457 274 273 19 chr11 98673558 98673774 -23170082 + B4 SINE B4 2 272 -20 3 1337 372 94 0 0 chr11 98673941 98673994 -23169862 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 1337 851 168 35 0 chr11 98674138 98674281 -23169575 + B1_Mur3 SINE Alu 1 148 -1 3 1337 1666 11 0 25 chr11 98674416 98674613 -23169243 - B2_Mm1a SINE B2 0 193 2 3 1337 293 172 0 65 chr11 98674614 98674676 -23169180 - B1_Mus2 SINE Alu -1 146 89 3 1337 848 161 27 20 chr11 98674859 98675005 -23168851 - B1_Mus1 SINE Alu -1 147 1 3 1337 894 212 109 0 chr11 98675025 98675218 -23168638 - B3 SINE B2 0 216 3 3 1337 349 304 58 10 chr11 98675746 98675849 -23168007 + PB1D10 SINE Alu 1 108 -9 3 1337 530 191 9 19 chr11 98675864 98675971 -23167885 - B1_Mur1 SINE Alu -1 148 43 3 1337 325 276 53 0 chr11 98676018 98676094 -23167762 + ID4_ SINE ID 4 83 0 3 1337 504 0 0 0 chr11 98676130 98676186 -23167670 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1337 311 50 0 0 chr11 98676189 98676229 -23167627 - B1_Mur4 SINE Alu -8 142 103 3 1337 1206 50 0 0 chr11 98676244 98676383 -23167473 - B1_Mm SINE Alu -8 139 1 3 1337 22 0 0 0 chr11 98676393 98676415 -23167441 + AT_rich Low_complexity Low_complexity 1 22 0 3 1337 684 228 13 58 chr11 98676417 98676571 -23167285 + B1_Mur3 SINE Alu 3 149 0 3 1337 231 235 56 90 chr11 98676604 98676693 -23167163 + BC1_Mm scRNA scRNA 7 92 -60 3 1337 296 261 118 34 chr11 98676719 98676838 -23167018 - MT2B LTR ERVL -298 303 175 3 1337 423 222 133 0 chr11 98676756 98676846 -23167010 - B1_Mus1 SINE Alu -43 105 4 3 1337 795 275 14 51 chr11 98676977 98677192 -23166664 + MTE-int LTR MaLR 882 1088 -492 3 1337 1160 68 0 7 chr11 98677204 98677353 -23166503 - B1_Mus1 SINE Alu 0 148 1 3 1337 1050 149 378 3 chr11 98677393 98677692 -23166164 - MTC LTR MaLR -8 413 1 3 1337 1230 238 67 3 chr11 98677693 98678052 -23165804 + L1M4 LINE L1 3502 3883 -2263 4 1337 343 306 34 59 chr11 98678270 98678388 -23165468 - B3A SINE B2 -39 159 45 4 1337 322 339 15 83 chr11 98678392 98678524 -23165332 + U17 snRNA snRNA 68 190 -17 4 1337 1352 50 32 42 chr11 98678623 98678813 -23165043 + B2_Mm2 SINE B2 1 188 -7 4 1337 785 205 37 37 chr11 98678814 98678976 -23164880 + B3A SINE B2 1 162 -36 4 1337 445 306 20 40 chr11 98679093 98679243 -23164613 - B1_Mur1 SINE Alu -1 148 2 4 1337 497 303 82 49 chr11 98679348 98679653 -23164203 - RLTR15 LTR ERVK 0 359 45 4 1337 994 87 35 39 chr11 98679692 98679857 -23163999 + B2_Mm2 SINE B2 28 187 -8 4 1337 822 141 56 7 chr11 98679865 98680008 -23163848 + B1_Mur4 SINE Alu 1 150 0 4 1337 627 269 42 42 chr11 98680008 98680198 -23163658 + B3 SINE B2 27 216 0 4 1337 1318 27 0 0 chr11 98680207 98680355 -23163501 - B1_Mus1 SINE Alu 0 148 1 4 1337 528 223 124 0 chr11 98680435 98680556 -23163300 + B1_Mur2 SINE Alu 1 136 -13 4 1337 1220 54 7 0 chr11 98680752 98680899 -23162957 + B1_Mus1 SINE Alu 1 148 0 4 1337 721 221 14 7 chr11 98680956 98681097 -23162759 + B1_Mur1 SINE Alu 1 142 -7 4 1337 249 231 19 0 chr11 98681132 98681184 -23162672 + ID4 SINE ID 11 63 -20 4 1337 474 300 27 0 chr11 98681269 98681379 -23162477 + RSINE1 SINE B4 18 130 -35 4 1337 463 248 18 35 chr11 98681484 98681597 -23162259 - PB1D10 SINE Alu 0 117 7 4 1337 318 106 0 0 chr11 98681665 98681712 -23162144 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1337 394 318 59 29 chr11 98681712 98681848 -23162008 - RSINE1 SINE B4 -24 141 2 4 1337 254 105 26 0 chr11 98682136 98682174 -23161682 - ID4_ SINE ID -31 52 14 4 1337 991 271 56 22 chr11 98682215 98682483 -23161373 - B4 SINE B4 -13 279 3 4 1337 599 248 53 0 chr11 98682490 98682623 -23161233 - ID_B1 SINE B4 0 224 85 4 1337 355 304 36 0 chr11 98683242 98683354 -23160502 + PB1D10 SINE Alu 2 117 0 4 1337 392 222 26 69 chr11 98683360 98683476 -23160380 + PB1D9 SINE Alu 5 115 -5 4 1337 342 0 0 0 chr11 98683928 98683966 -23159890 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1337 207 0 0 0 chr11 98683967 98683990 -23159866 + (TTGG)n Simple_repeat Simple_repeat 1 23 0 4 1337 858 175 21 0 chr11 98685189 98685332 -23158524 + B1_Mur4 SINE Alu 5 150 0 4 1337 1195 48 0 13 chr11 98685335 98685484 -23158372 + B1_Mus2 SINE Alu 1 147 0 4 1337 987 158 43 5 chr11 98685563 98685748 -23158108 - B2_Mm2 SINE B2 -2 193 2 4 1337 829 134 243 6 chr11 98685754 98685927 -23157929 - B3 SINE B2 0 216 3 4 1337 640 259 36 0 chr11 98685931 98686070 -23157786 - B3 SINE B2 -3 213 70 4 1337 2795 206 95 32 chr11 98686079 98686798 -23157058 - Lx9 LINE L1 -1 7643 6864 4 1337 1168 84 0 0 chr11 98686798 98686941 -23156915 + B1_Mus1 SINE Alu 2 144 -4 4 1337 2795 206 95 32 chr11 98686941 98687028 -23156828 - Lx9 LINE L1 -781 6863 6786 4 1337 368 229 0 0 chr11 98687071 98687141 -23156715 - Lx9 LINE L1 -984 6660 6591 4 1337 1080 45 0 8 chr11 98687346 98687479 -23156377 - B1_Mus1 SINE Alu 0 148 17 4 1337 180 0 0 0 chr11 98687479 98687499 -23156357 + (CCA)n Simple_repeat Simple_repeat 2 21 0 4 1337 1087 137 0 6 chr11 98687503 98687679 -23156177 - ORR1A1 LTR MaLR -171 175 1 4 1337 270 0 0 0 chr11 98687724 98687754 -23156102 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1337 899 257 9 46 chr11 98687764 98687980 -23155876 - B3 SINE B2 0 216 9 4 1337 1405 82 11 0 chr11 98687993 98688177 -23155679 - B2_Mm1t SINE B2 -6 187 2 4 1337 444 115 0 0 chr11 98688522 98688583 -23155273 + B1_Mus2 SINE Alu 64 124 -23 4 1337 1217 50 0 0 chr11 98688662 98688803 -23155053 - B1_Mus2 SINE Alu -5 142 2 4 1337 485 257 142 0 chr11 98689048 98689161 -23154695 - B1_Mur1 SINE Alu -18 131 3 4 1337 1085 185 189 0 chr11 98689168 98689427 -23154429 - ORR1D1 LTR MaLR -25 349 42 4 1337 397 324 58 14 chr11 98689485 98689623 -23154233 - B1F SINE Alu 0 149 6 4 1337 730 199 13 27 chr11 98690947 98691097 -23152759 - B1_Mur3 SINE Alu 0 149 2 4 1337 365 226 0 109 chr11 98690992 98691111 -23152745 - MT2B LTR ERVL -341 260 155 4 1337 245 182 143 45 chr11 98691109 98691208 -23152648 - B1F2 SINE Alu 0 149 17 4 1337 553 247 41 58 chr11 98691445 98691617 -23152239 + B3A SINE B2 1 169 -29 4 1337 832 193 171 35 chr11 98691617 98691744 -23152112 - MTC LTR MaLR 0 421 302 4 1337 207 0 0 0 chr11 98691744 98691767 -23152089 + (G)n Simple_repeat Simple_repeat 1 23 0 4 1337 832 193 171 35 chr11 98691767 98691838 -23152018 - MTC LTR MaLR -120 301 197 4 1337 1257 41 7 0 chr11 98691998 98692144 -23151712 + B1_Mus2 SINE Alu 1 147 0 4 1337 1186 55 0 7 chr11 98692174 98692322 -23151534 + B1_Mm SINE Alu 1 147 0 4 1337 228 59 0 0 chr11 98692396 98692430 -23151426 - PB1D9 SINE Alu 0 120 87 4 1337 403 192 78 29 chr11 98693274 98693376 -23150480 - PB1D7 SINE Alu -13 107 1 4 1337 216 0 0 0 chr11 98695282 98695306 -23148550 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1337 307 244 21 43 chr11 98695313 98695407 -23148449 - PB1D10 SINE Alu -16 101 10 4 1337 233 29 29 0 chr11 98695454 98695488 -23148368 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1337 486 264 65 12 chr11 98696416 98696585 -23147271 - MER5B DNA MER1_type 0 178 1 4 1337 330 87 0 0 chr11 98697016 98697062 -23146794 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1338 181 315 19 0 chr11 98697368 98697422 -23146434 - L2 LINE L2 -2805 614 560 4 1338 24 0 0 0 chr11 98698016 98698040 -23145816 + GC_rich Low_complexity Low_complexity 1 24 0 4 1338 207 276 55 87 chr11 98700673 98700800 -23143056 - L3 LINE CR1 -2235 2254 2132 4 1338 1313 87 17 0 chr11 98701753 98701926 -23141930 - B2_Mm2 SINE B2 -19 176 1 4 1338 443 238 62 31 chr11 98701949 98702079 -23141777 + MIRc SINE MIR 63 196 -72 4 1338 847 174 0 7 chr11 98702251 98702390 -23141466 + B1_Mus1 SINE Alu 1 138 -10 4 1338 477 256 70 42 chr11 98702551 98702694 -23141162 - B1F2 SINE Alu 0 149 3 4 1338 204 122 0 0 chr11 98702737 98702778 -23141078 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1338 1100 88 0 7 chr11 98702803 98702951 -23140905 - B1_Mus2 SINE Alu 0 147 1 4 1338 1598 52 0 0 chr11 98703096 98703288 -23140568 - B2_Mm1t SINE B2 0 193 2 4 1338 808 239 65 10 chr11 98704077 98704276 -23139580 - B3 SINE B2 -6 210 1 4 1338 398 270 104 0 chr11 98704407 98704522 -23139334 - B1F SINE Alu -22 127 1 4 1338 774 288 72 43 chr11 98704562 98704845 -23139011 - MER63B DNA AcHobo -2 434 141 4 1338 441 0 0 0 chr11 98704845 98704894 -23138962 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 1338 1109 99 0 0 chr11 98704896 98705037 -23138819 - B1_Mus2 SINE Alu -6 141 1 4 1338 774 288 72 43 chr11 98705037 98705055 -23138801 - MER63B DNA AcHobo -296 140 121 4 1338 905 109 78 28 chr11 98705181 98705322 -23138534 - B1_Mur4 SINE Alu 0 150 3 4 1338 802 120 17 8 chr11 98705373 98705491 -23138365 + PB1D9 SINE Alu 2 120 0 4 1338 929 197 53 5 chr11 98705583 98705772 -23138084 + B3 SINE B2 9 206 -10 4 1338 520 248 0 35 chr11 98705787 98705900 -23137956 + PB1D10 SINE Alu 1 109 -8 4 1338 291 273 30 0 chr11 98705918 98705984 -23137872 + ID4_ SINE ID 2 69 -14 4 1338 342 0 0 0 chr11 98705993 98706031 -23137825 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1338 822 168 293 0 chr11 98706424 98706591 -23137265 - B3 SINE B2 0 216 1 4 1338 261 355 88 64 chr11 98706835 98707085 -23136771 - L2b LINE L2 -10 3365 3110 4 1338 356 278 0 11 chr11 98707703 98707794 -23136062 + MER5A1 DNA MER1_type 77 166 0 4 1338 279 0 0 0 chr11 98707970 98708001 -23135855 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1338 331 263 40 10 chr11 98708008 98708108 -23135748 - PB1D9 SINE Alu -13 107 5 4 1338 1148 51 0 0 chr11 98708951 98709088 -23134768 + B1_Mm SINE Alu 2 138 -9 4 1338 256 24 49 0 chr11 98709088 98709129 -23134727 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 4 1338 792 252 45 50 chr11 98709141 98709362 -23134494 + ID_B1 SINE B4 4 223 -1 4 1338 742 244 43 0 chr11 98709377 98709541 -23134315 + B3A SINE B2 2 172 -26 4 1338 901 160 14 7 chr11 98709596 98709741 -23134115 - B1_Mur2 SINE Alu -2 147 2 4 1338 1297 80 35 56 chr11 98709815 98710013 -23133843 + B2_Mm2 SINE B2 2 195 0 4 1338 402 74 0 0 chr11 98710014 98710068 -23133788 + (TAGG)n Simple_repeat Simple_repeat 2 55 0 4 1338 195 42 0 0 chr11 98710068 98710091 -23133765 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 4 1338 892 34 0 0 chr11 98710263 98710380 -23133476 - L1Md_A LINE L1 0 6582 6466 4 1338 564 15 0 0 chr11 98712928 98712993 -23130863 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1338 204 40 0 0 chr11 98713469 98713494 -23130362 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 4 1338 306 67 0 0 chr11 98714441 98714486 -23129370 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1338 370 308 116 7 chr11 98714972 98715119 -23128737 + RSINE1 SINE B4 2 164 -1 4 1338 542 133 39 34 chr11 98715119 98715298 -23128558 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1338 217 143 0 0 chr11 98715363 98715398 -23128458 + B4A SINE B4 86 120 -172 4 1338 519 188 134 45 chr11 98715443 98715577 -23128279 - B1_Mur1 SINE Alu -2 147 2 5 1338 822 134 117 31 chr11 98715789 98715951 -23127905 - B2_Mm2 SINE B2 -19 176 1 5 1338 348 273 50 0 chr11 98716053 98716152 -23127704 - PB1D7 SINE Alu -14 106 3 5 1338 448 270 43 53 chr11 98716155 98716345 -23127511 + L1M5 LINE L1 5516 5714 -448 5 1338 182 33 0 62 chr11 98716427 98716459 -23127397 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 5 1338 1186 42 0 34 chr11 98716460 98716609 -23127247 - B1_Mus2 SINE Alu -2 145 2 5 1338 998 147 19 91 chr11 98716629 98716839 -23127017 - B2_Mm2 SINE B2 0 195 1 5 1338 421 209 44 0 chr11 98716909 98717000 -23126856 + B1F SINE Alu 10 104 -45 5 1338 856 222 78 29 chr11 98717101 98717305 -23126551 + B3 SINE B2 2 215 -1 5 1338 544 261 66 31 chr11 98717307 98717484 -23126372 + B3A SINE B2 22 189 -27 5 1338 309 296 42 49 chr11 98717494 98717636 -23126220 + B1F SINE Alu 5 145 -4 5 1338 819 247 120 12 chr11 98717671 98717913 -23125943 + B4A SINE B4 3 270 -22 5 1338 294 377 97 0 chr11 98717973 98718087 -23125769 + PB1 SINE Alu 1 125 -2 5 1338 320 117 25 25 chr11 98718091 98718170 -23125686 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1338 228 276 134 6 chr11 98718228 98718385 -23125471 + L1M5 LINE L1 5743 5919 -260 5 1338 671 231 0 7 chr11 98718396 98718531 -23125325 + B1_Mur1 SINE Alu 11 144 -5 5 1338 389 265 122 81 chr11 98718656 98718709 -23125147 + L2a LINE L2 3196 3243 -183 5 1338 1391 75 16 0 chr11 98718709 98718895 -23124961 + B2_Mm1t SINE B2 1 189 -4 5 1338 389 265 122 81 chr11 98718895 98719063 -23124793 + L2a LINE L2 3244 3426 0 5 1338 396 222 22 0 chr11 98719267 98719357 -23124499 - PB1D10 SINE Alu -1 116 25 5 1338 261 245 28 8 chr11 98719703 98719790 -23124066 - B1F1 SINE Alu -18 102 17 5 1338 311 397 26 0 chr11 98719865 98719878 -23123978 - B1F1 SINE Alu -29 120 3 5 1338 451 304 0 0 chr11 98719878 98719980 -23123876 - ID_B1 SINE B4 -39 185 84 5 1338 1087 120 0 180 chr11 98720097 98720330 -23123526 - B2_Mm2 SINE B2 -4 191 1 5 1338 422 263 61 93 chr11 98720610 98720781 -23123075 + MT2B LTR ERVL 98 264 -320 5 1338 1144 50 0 0 chr11 98720675 98720815 -23123041 + B1_Mus2 SINE Alu 7 146 -1 5 1338 638 205 31 0 chr11 98720828 98720955 -23122901 - B1_Mur1 SINE Alu -13 136 6 5 1338 497 252 52 9 chr11 98720959 98721075 -23122781 - B4A SINE B4 -61 231 111 5 1338 443 323 15 0 chr11 98721083 98721213 -23122643 - B1F SINE Alu -15 134 3 5 1338 1217 61 0 20 chr11 98721233 98721244 -23122612 - B1_Mus1 SINE Alu 0 148 140 5 1338 207 0 0 0 chr11 98721244 98721267 -23122589 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 1338 1217 61 0 20 chr11 98721267 98721406 -23122450 - B1_Mus1 SINE Alu -9 139 1 5 1338 1530 37 37 0 chr11 98721407 98721594 -23122262 - B2_Mm2 SINE B2 0 195 2 5 1338 913 184 0 7 chr11 98721625 98721773 -23122083 + B1_Mur2 SINE Alu 1 147 -2 5 1338 1028 251 0 0 chr11 98721805 98722008 -23121848 + B3 SINE B2 1 203 -13 5 1338 759 112 0 0 chr11 98722038 98722154 -23121702 + (GGA)n Simple_repeat Simple_repeat 2 117 0 5 1338 2673 158 25 5 chr11 98722566 98723011 -23120845 + Lx5 LINE L1 6597 7050 0 5 1338 477 195 0 23 chr11 98723291 98723409 -23120447 + CT-rich Low_complexity Low_complexity 15 129 0 5 1338 1404 85 37 0 chr11 98723409 98723597 -23120259 - B2_Mm2 SINE B2 0 195 1 5 1338 477 195 0 23 chr11 98723597 98723609 -23120247 + polypyrimidine Low_complexity Low_complexity 3 14 0 5 1338 652 140 19 0 chr11 98723619 98723726 -23120130 - B1_Mur3 SINE Alu 0 149 41 5 1338 242 326 86 56 chr11 98723740 98724022 -23119834 + L2c LINE L2 3091 3403 -23 5 1338 376 276 39 23 chr11 98724668 98724798 -23119058 + MER5B DNA MER1_type 35 166 -12 5 1338 699 24 0 0 chr11 98725014 98725099 -23118757 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 1338 255 170 0 0 chr11 98725949 98725996 -23117860 + CT-rich Low_complexity Low_complexity 1 47 0 5 1338 639 154 92 35 chr11 98725996 98726137 -23117719 - B1_Mur4 SINE Alu 0 150 2 5 1338 978 147 0 26 chr11 98726165 98726319 -23117537 - B1_Mur4 SINE Alu 0 150 1 5 1338 1136 112 24 0 chr11 98726330 98726500 -23117356 - B2_Mm2 SINE B2 -7 188 15 5 1338 198 0 0 0 chr11 98726513 98726535 -23117321 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1338 1122 63 7 0 chr11 98726541 98726683 -23117173 + B1_Mus2 SINE Alu 5 147 0 5 1338 1463 79 5 0 chr11 98726699 98726889 -23116967 + B2_Mm2 SINE B2 1 191 -4 5 1338 1033 129 53 0 chr11 98726889 98727051 -23116805 - B2_Mm2 SINE B2 -22 173 3 5 1338 279 0 0 0 chr11 98727058 98727089 -23116767 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1338 1293 27 0 0 chr11 98727089 98727236 -23116620 - B1_Mus2 SINE Alu 0 147 1 5 1338 188 275 45 81 chr11 98727339 98727450 -23116406 + L3 LINE CR1 4290 4396 -93 5 1338 939 162 15 0 chr11 98727726 98727862 -23115994 - B1_Mur4 SINE Alu -11 139 2 5 1338 836 167 8 0 chr11 98728167 98728299 -23115557 - B1_Mus1 SINE Alu -15 133 1 5 1338 1158 48 7 52 chr11 98728321 98728475 -23115381 - B1_Mus2 SINE Alu 0 147 1 5 1338 267 267 0 85 chr11 98729302 98729384 -23114472 - ID4 SINE ID -8 75 1 5 1338 326 206 99 40 chr11 98729429 98729530 -23114326 + PB1D9 SINE Alu 1 107 -13 5 1338 23 54 0 0 chr11 98729922 98729959 -23113897 + AT_rich Low_complexity Low_complexity 1 37 0 5 1338 422 308 13 40 chr11 98729994 98730143 -23113713 - RSINE1 SINE B4 -17 148 4 5 1338 239 232 42 42 chr11 98730190 98730262 -23113594 + ID4 SINE ID 3 74 -9 5 1338 1091 38 0 0 chr11 98730358 98730490 -23113366 - B1_Mm SINE Alu -8 139 8 5 1338 443 194 8 100 chr11 98730385 98730505 -23113351 - MT2B LTR ERVL -337 264 156 5 1338 185 132 26 0 chr11 98730613 98730651 -23113205 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1338 216 0 0 0 chr11 98730660 98730684 -23113172 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1338 507 33 0 0 chr11 98730684 98730745 -23113111 + (GGA)n Simple_repeat Simple_repeat 2 62 0 5 1338 312 298 95 41 chr11 98730762 98730909 -23112947 - RSINE1 SINE B4 -9 156 2 5 1338 212 221 65 154 chr11 98730920 98731043 -23112813 - B1F SINE Alu -8 141 30 5 1338 345 231 39 124 chr11 98730956 98731109 -23112747 + B3A SINE B2 59 198 0 5 1338 315 278 88 73 chr11 98731148 98731284 -23112572 + ID_B1 SINE B4 84 221 -3 5 1338 293 352 28 9 chr11 98731330 98731436 -23112420 + ID_B1 SINE B4 77 184 -40 5 1338 242 179 0 0 chr11 98731436 98731475 -23112381 + BC1_Mm scRNA scRNA 13 51 -101 5 1338 485 230 10 10 chr11 98731552 98731653 -23112203 - B3A SINE B2 -95 103 3 5 1338 210 143 0 0 chr11 98731684 98731719 -23112137 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1338 465 202 34 0 chr11 98731723 98731812 -23112044 - U6 snRNA snRNA -14 93 2 5 1338 234 62 0 0 chr11 98731818 98731850 -23112006 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1338 703 139 122 15 chr11 98731850 98731974 -23111882 - B1_Mus1 SINE Alu -9 139 2 5 1338 481 317 85 0 chr11 98732193 98732357 -23111499 - B3A SINE B2 -20 178 1 5 1338 350 316 117 47 chr11 98732490 98732746 -23111110 - L2b LINE L2 -31 3344 3071 5 1338 261 236 53 40 chr11 98732821 98732896 -23110960 - ID2 SINE ID -2 81 6 5 1338 282 148 0 85 chr11 98733980 98734039 -23109817 - B1_Mur1 SINE Alu 0 149 96 5 1338 589 14 0 0 chr11 98734082 98734153 -23109703 + B1_Mus2 SINE Alu 77 147 0 5 1338 310 191 0 22 chr11 98734153 98734231 -23109625 + GA-rich Low_complexity Low_complexity 2 77 0 5 1338 1012 131 58 26 chr11 98734231 98734420 -23109436 + B2_Mm2 SINE B2 1 195 0 5 1338 310 191 0 22 chr11 98734420 98734432 -23109424 + polypurine Low_complexity Low_complexity 78 89 0 5 1338 293 254 134 24 chr11 98734433 98734455 -23109401 + B4 SINE B4 86 162 -130 5 1338 402 163 38 124 chr11 98734455 98734560 -23109296 + PB1D9 SINE Alu 25 120 0 5 1338 293 254 134 24 chr11 98734560 98734582 -23109274 + B4 SINE B4 163 248 -44 5 1338 1663 108 11 180 chr11 98734593 98734665 -23109191 - ORR1A4 LTR MaLR -8 321 268 5 1338 1234 68 0 0 chr11 98734665 98734813 -23109043 - B1_Mus1 SINE Alu 0 148 1 5 1338 1663 108 11 180 chr11 98734813 98735102 -23108754 - ORR1A4 LTR MaLR -62 267 21 5 1338 280 237 4 7 chr11 98735090 98735164 -23108692 - B1F1 SINE Alu -91 58 5 5 1338 269 290 0 0 chr11 98735110 98735172 -23108684 - ID_B1 SINE B4 -85 139 78 5 1338 404 319 8 8 chr11 98735219 98735339 -23108517 - PB1 SINE Alu -3 124 5 5 1338 509 299 7 35 chr11 98735549 98735691 -23108165 - RSINE1 SINE B4 -25 140 3 5 1338 21 71 0 0 chr11 98735850 98735892 -23107964 + AT_rich Low_complexity Low_complexity 1 42 0 5 1338 480 293 20 60 chr11 98735901 98736050 -23107806 + RSINE1 SINE B4 2 144 -21 5 1338 432 181 0 0 chr11 98736089 98736172 -23107684 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1338 625 245 0 56 chr11 98736193 98736353 -23107503 + RSINE1 SINE B4 4 154 -11 5 1338 418 297 0 10 chr11 98736390 98736492 -23107364 - ID_B1 SINE B4 -38 186 86 5 1338 422 220 43 32 chr11 98736547 98736641 -23107215 - B1F SINE Alu -54 95 1 5 1338 567 122 122 0 chr11 98736690 98736788 -23107068 + B1_Mus1 SINE Alu 34 143 -5 5 1338 337 311 50 8 chr11 98736856 98736976 -23106880 + B4A SINE B4 3 127 -165 5 1338 608 201 49 28 chr11 98737009 98737152 -23106704 - B1_Mur1 SINE Alu -2 147 2 6 1338 473 161 0 75 chr11 98737246 98737340 -23106516 - PB1D9 SINE Alu 0 120 34 6 1338 180 103 0 0 chr11 98737479 98737495 -23106361 + (TTTTC)n Simple_repeat Simple_repeat 5 20 0 6 1338 1674 36 0 0 chr11 98737495 98737688 -23106168 - B2_Mm1a SINE B2 0 193 1 6 1338 180 103 0 0 chr11 98737688 98737700 -23106156 + (TTTTC)n Simple_repeat Simple_repeat 3 14 0 6 1338 980 93 29 0 chr11 98737713 98737853 -23106003 + B2_Mm2 SINE B2 50 193 -2 6 1338 873 244 29 5 chr11 98737902 98738108 -23105748 - B3 SINE B2 -4 212 2 6 1338 576 194 0 36 chr11 98738123 98738235 -23105621 - PB1D10 SINE Alu 0 117 10 6 1338 352 277 81 149 chr11 98738301 98738475 -23105381 - RSINE1 SINE B4 0 165 4 6 1338 647 167 20 40 chr11 98738739 98738811 -23105045 - BC1_Mm scRNA scRNA -4 148 80 6 1338 279 0 0 0 chr11 98738811 98738842 -23105014 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1338 647 167 20 40 chr11 98738842 98738919 -23104937 - BC1_Mm scRNA scRNA -73 79 2 6 1338 1234 49 0 0 chr11 98738954 98739097 -23104759 - B1_Mus2 SINE Alu -1 146 4 6 1338 236 277 77 0 chr11 98739140 98739205 -23104651 - ID4_ SINE ID -11 72 3 6 1338 1096 30 8 0 chr11 98739282 98739416 -23104440 - B1_Mus2 SINE Alu 0 147 13 6 1338 444 184 17 127 chr11 98739316 98739434 -23104422 - MT2B LTR ERVL -337 264 160 6 1338 268 257 81 0 chr11 98739923 98739997 -23103859 - PB1D9 SINE Alu -7 113 34 6 1338 235 251 182 2 chr11 98740335 98740420 -23103436 - ID4_ SINE ID -53 99 1 6 1338 532 252 46 39 chr11 98740462 98740615 -23103241 - RSINE1 SINE B4 -1 164 11 6 1338 423 0 0 0 chr11 98740660 98740707 -23103149 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1338 236 160 80 0 chr11 98740714 98740764 -23103092 - PB1D10 SINE Alu -63 54 1 6 1338 559 299 0 0 chr11 98740818 98740935 -23102921 + ID_B1 SINE B4 93 209 -15 6 1338 27 0 0 26 chr11 98740948 98740974 -23102882 + AT_rich Low_complexity Low_complexity 1 26 0 6 1338 1748 10 0 0 chr11 98740974 98741166 -23102690 - B2_Mm1a SINE B2 0 193 2 6 1338 27 0 0 26 chr11 98741166 98741177 -23102679 + AT_rich Low_complexity Low_complexity 1 11 0 6 1338 1400 29 114 0 chr11 98741177 98741352 -23102504 - B2_Mm2 SINE B2 0 195 1 6 1338 480 239 66 41 chr11 98741354 98741476 -23102380 - B1_Mur1 SINE Alu -2 147 23 6 1338 499 118 51 13 chr11 98741559 98741659 -23102197 + B3 SINE B2 2 100 -98 6 1338 1359 68 17 7 chr11 98742132 98742325 -23101531 - B2_Mm2 SINE B2 0 216 2 6 1338 583 230 58 0 chr11 98742335 98742474 -23101382 - B1_Mur1 SINE Alu -1 148 2 6 1338 1208 61 0 7 chr11 98742653 98742801 -23101055 - B1_Mus2 SINE Alu 0 147 1 6 1338 377 312 37 0 chr11 98742982 98743091 -23100765 - PB1 SINE Alu -9 118 6 6 1338 861 156 256 0 chr11 98743127 98743307 -23100549 - URR1A DNA MER1_type 0 226 1 6 1338 195 69 0 0 chr11 98743389 98743418 -23100438 + (TATG)n Simple_repeat Simple_repeat 2 30 0 6 1338 321 93 0 0 chr11 98743564 98743618 -23100238 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 6 1338 328 164 79 40 chr11 98743628 98743704 -23100152 - B4 SINE B4 -50 242 164 6 1338 817 159 14 14 chr11 98743766 98743906 -23099950 - B1_Mur3 SINE Alu 0 149 10 6 1338 224 367 22 0 chr11 98744076 98744166 -23099690 - RSINE1 SINE B4 -71 94 3 6 1338 277 43 65 0 chr11 98744591 98744637 -23099219 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 6 1338 687 180 143 17 chr11 98744643 98744818 -23099038 - B3A SINE B2 0 198 2 6 1338 301 338 0 0 chr11 98745151 98745225 -23098631 + MER58C DNA MER1_type 9 82 -133 6 1338 228 303 30 167 chr11 98745245 98745303 -23098553 - MT2B LTR ERVL -276 325 160 6 1338 633 175 141 8 chr11 98745305 98745426 -23098430 - B1_Mus1 SINE Alu -6 142 6 6 1338 281 298 104 30 chr11 98745426 98745438 -23098418 - B4 SINE B4 -70 220 78 6 1338 968 225 36 29 chr11 98745652 98745931 -23097925 + L1MC LINE L1 5341 5621 -723 6 1338 259 233 33 0 chr11 98745977 98746037 -23097819 + L1MC2 LINE L1 6258 6319 -25 6 1338 205 191 0 0 chr11 98746363 98746405 -23097451 + CT-rich Low_complexity Low_complexity 1 42 0 6 1338 859 271 9 9 chr11 98746584 98746800 -23097056 - B3 SINE B2 0 216 1 6 1338 3211 53 5 5 chr11 98746829 98747225 -23096631 - MTA_Mm LTR MaLR 0 396 1 6 1338 339 276 125 11 chr11 98747235 98747323 -23096533 - PB1D10 SINE Alu -15 102 5 6 1338 29 47 0 0 chr11 98747342 98747385 -23096471 + AT_rich Low_complexity Low_complexity 1 43 0 6 1338 397 286 60 20 chr11 98747396 98747496 -23096360 - B1_Mur1 SINE Alu -10 139 36 6 1338 985 130 14 0 chr11 98747676 98747822 -23096034 + B1_Mus1 SINE Alu 1 148 0 6 1338 942 219 50 0 chr11 98747976 98748177 -23095679 - B3 SINE B2 -5 211 1 6 1338 224 30 30 0 chr11 98748186 98748219 -23095637 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 6 1338 563 172 21 0 chr11 98748227 98748320 -23095536 - B1_Mm SINE Alu -51 96 2 6 1338 394 254 59 37 chr11 98748320 98748367 -23095489 - ID SINE ID -143 81 32 6 1338 291 192 13 64 chr11 98748325 98748403 -23095453 - PB1D10 SINE Alu -2 115 42 6 1338 643 276 25 25 chr11 98748639 98748843 -23095013 - B3 SINE B2 -12 204 1 6 1338 1838 131 26 81 chr11 98748956 98749304 -23094552 - ORR1A4 LTR MaLR 0 329 1 6 1338 242 293 71 24 chr11 98749410 98749494 -23094362 - PB1D10 SINE Alu -29 88 1 6 1338 485 271 101 0 chr11 98749561 98749690 -23094166 + RSINE1 SINE B4 3 144 -21 6 1338 323 292 0 0 chr11 98749749 98749821 -23094035 + ID4 SINE ID 2 73 -10 6 1338 1103 83 21 0 chr11 98750087 98750232 -23093624 - B1_Mus1 SINE Alu 0 148 1 6 1338 323 299 58 71 chr11 98750277 98750432 -23093424 + B4A SINE B4 126 278 -14 6 1338 255 61 0 0 chr11 98750437 98750470 -23093386 + (CATA)n Simple_repeat Simple_repeat 4 36 0 6 1338 3368 49 2 12 chr11 98750642 98751052 -23092804 - MTB_Mm LTR MaLR -1 406 1 6 1338 338 279 35 11 chr11 98751072 98751159 -23092697 + RSINE1 SINE B4 16 104 -61 6 1338 678 173 15 8 chr11 98751221 98751355 -23092501 + B1_Mus2 SINE Alu 13 147 0 6 1338 328 345 66 10 chr11 98751543 98751739 -23092117 + MIRb SINE MIR 46 252 -16 6 1338 216 237 49 62 chr11 98753165 98753246 -23090610 + ID4 SINE ID 3 82 -1 6 1338 492 184 63 28 chr11 98754426 98754535 -23089321 - PB1D9 SINE Alu -2 118 1 6 1338 356 238 26 103 chr11 98754431 98754548 -23089308 - MT2B LTR ERVL -338 263 156 6 1338 1211 62 7 0 chr11 98754576 98754722 -23089134 + B1_Mus1 SINE Alu 2 148 0 6 1338 671 147 368 13 chr11 98754739 98754891 -23088965 + B3 SINE B2 3 208 -8 6 1338 240 326 12 0 chr11 98755112 98755198 -23088658 + PB1 SINE Alu 27 113 -14 6 1338 759 245 47 26 chr11 98755289 98755482 -23088374 + B3 SINE B2 20 216 0 6 1338 783 144 56 21 chr11 98755498 98755640 -23088216 + B1_Mm SINE Alu 1 147 0 6 1338 916 222 34 39 chr11 98755849 98756064 -23087792 + B3 SINE B2 2 213 -3 6 1338 189 94 0 0 chr11 98756083 98756115 -23087741 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1338 1235 54 0 0 chr11 98756115 98756262 -23087594 - B1_Mus2 SINE Alu 0 147 1 6 1338 222 274 68 0 chr11 98756700 98756773 -23087083 + B1F SINE Alu 41 118 -31 6 1338 526 184 44 0 chr11 98756787 98756901 -23086955 + PB1D9 SINE Alu 2 120 0 6 1338 1156 75 7 0 chr11 98757086 98757232 -23086624 - B1_Mus2 SINE Alu 0 147 1 6 1338 362 277 0 0 chr11 98757946 98758029 -23085827 + ID4 SINE ID 1 83 0 6 1338 254 178 22 0 chr11 98758047 98758092 -23085764 + ID4 SINE ID 35 80 -3 6 1338 533 205 0 59 chr11 98758490 98758609 -23085247 + PB1D10 SINE Alu 5 116 -1 6 1338 600 215 39 0 chr11 98759029 98759159 -23084697 + B1_Mur1 SINE Alu 3 137 -12 6 1338 1150 52 0 0 chr11 98759195 98759331 -23084525 - B1_Mm SINE Alu -8 139 4 6 1338 928 213 27 11 chr11 98759333 98759518 -23084338 + B3 SINE B2 29 216 0 6 1338 423 0 0 0 chr11 98759529 98759576 -23084280 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1338 926 223 52 41 chr11 98759579 98759846 -23084010 - B4A SINE B4 -22 270 1 6 1338 508 196 41 0 chr11 98760240 98760337 -23083519 - RSINE1 SINE B4 -62 103 3 6 1338 686 150 117 64 chr11 98760380 98760551 -23083305 + B2_Mm2 SINE B2 1 180 -15 6 1338 1272 48 0 0 chr11 98760551 98760698 -23083158 + B1_Mus2 SINE Alu 1 147 0 6 1338 270 0 0 0 chr11 98760698 98760728 -23083128 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1338 831 83 0 0 chr11 98760758 98760867 -23082989 + B1_Mus1 SINE Alu 40 148 0 6 1338 243 79 0 0 chr11 98762509 98762547 -23081309 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 6 1338 959 120 8 0 chr11 98762579 98762712 -23081144 - B1_Mus2 SINE Alu -13 134 1 6 1338 243 247 0 0 chr11 98763149 98763222 -23080634 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1338 205 258 0 53 chr11 98764604 98764698 -23079158 + A-rich Low_complexity Low_complexity 3 91 0 6 1338 185 65 32 0 chr11 98765449 98765480 -23078376 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1338 1290 34 0 0 chr11 98765490 98765636 -23078220 - B1_Mus1 SINE Alu -2 146 1 7 1338 247 275 87 52 chr11 98765848 98765963 -23077893 - MT2B LTR ERVL -308 293 175 7 1338 432 179 159 9 chr11 98765866 98765973 -23077883 - B1_Mm SINE Alu -24 123 1 7 1338 228 35 0 0 chr11 98766199 98766228 -23077628 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 1338 276 30 0 0 chr11 98767232 98767265 -23076591 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1338 949 47 136 23 chr11 98767732 98767864 -23075992 + B1_Mus1 SINE Alu 1 147 -1 7 1338 811 142 67 0 chr11 98768070 98768204 -23075652 + B1_Mur3 SINE Alu 1 143 -6 7 1338 225 0 0 0 chr11 98768892 98768917 -23074939 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1338 841 171 14 7 chr11 98770425 98770572 -23073284 + B1_Mur4 SINE Alu 3 150 0 7 1338 403 315 96 10 chr11 98770655 98770854 -23073002 - ID_B1 SINE B4 -6 218 3 7 1338 354 310 125 31 chr11 98770914 98771074 -23072782 + MER20 DNA MER1_type 36 210 -9 7 1338 681 169 88 7 chr11 98771231 98771368 -23072488 + B1_Mur4 SINE Alu 2 149 -1 7 1338 661 216 60 66 chr11 98772143 98772326 -23071530 - B3 SINE B2 -34 182 1 7 1338 1254 48 0 0 chr11 98772339 98772486 -23071370 - B1_Mus2 SINE Alu 0 147 1 7 1338 414 263 0 0 chr11 98773018 98773094 -23070762 - ID4 SINE ID -7 76 1 7 1338 456 224 34 25 chr11 98773177 98773296 -23070560 - B1_Mur3 SINE Alu 0 149 30 7 1338 360 267 85 120 chr11 98773626 98773826 -23070030 - B4A SINE B4 0 292 100 7 1338 349 214 23 23 chr11 98773853 98773939 -23069917 - B3 SINE B2 -1 215 130 7 1338 1248 54 0 0 chr11 98773974 98774121 -23069735 + B1_Mus1 SINE Alu 2 148 0 7 1338 249 343 0 15 chr11 98774199 98774267 -23069589 + AluF_3 SINE Alu 137 197 -114 7 1338 270 188 0 0 chr11 98774345 98774393 -23069463 + B4A SINE B4 4 51 -241 7 1338 339 247 24 0 chr11 98774389 98774474 -23069382 + B4A SINE B4 200 286 -6 7 1338 232 269 0 107 chr11 98774555 98774630 -23069226 + BC1_Mm scRNA scRNA 22 88 -64 7 1338 668 121 52 148 chr11 98774679 98774834 -23069022 - B1_Mus2 SINE Alu -7 140 1 7 1338 322 148 38 17 chr11 98774845 98774915 -23068941 - PB1D9 SINE Alu -7 113 42 7 1338 315 305 57 0 chr11 98774918 98775023 -23068833 - PB1D10 SINE Alu -6 111 1 7 1338 475 233 139 0 chr11 98775579 98775708 -23068148 + RSINE1 SINE B4 3 149 -16 7 1338 1215 41 14 0 chr11 98776031 98776176 -23067680 - B1_Mus1 SINE Alu 0 148 2 7 1338 289 180 131 0 chr11 98777507 98777568 -23066288 - B1F SINE Alu -8 141 73 7 1338 1406 119 0 0 chr11 98777576 98777769 -23066087 - B2_Mm2 SINE B2 -1 194 2 7 1338 216 0 0 0 chr11 98777789 98777813 -23066043 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1338 465 230 59 45 chr11 98777813 98777940 -23065916 - B3 SINE B2 -13 203 75 7 1338 1389 80 6 0 chr11 98777963 98778138 -23065718 - B2_Mm2 SINE B2 -18 177 2 7 1338 388 248 18 71 chr11 98780800 98780913 -23062943 + B1_Mur1 SINE Alu 41 147 -2 7 1338 725 158 36 36 chr11 98780919 98781057 -23062799 + B1_Mur4 SINE Alu 2 139 -11 7 1338 211 277 0 0 chr11 98781122 98781169 -23062687 + B1F SINE Alu 18 64 -85 7 1338 714 225 45 55 chr11 98781274 98781476 -23062380 + B3 SINE B2 11 210 -6 7 1338 1081 92 0 7 chr11 98781478 98781631 -23062225 + B2_Mm2 SINE B2 14 165 -30 7 1338 908 67 44 7 chr11 98781639 98781774 -23062082 - B1_Mus1 SINE Alu 0 148 9 7 1338 273 322 80 49 chr11 98782688 98782851 -23061005 - YREP_Mm Unknown Unknown -1463 349 182 7 1338 576 209 99 15 chr11 98782722 98782853 -23061003 + ID_B1 SINE B4 82 223 -1 7 1338 304 319 20 41 chr11 98783275 98783373 -23060483 - RSINE1 SINE B4 -58 107 12 7 1338 375 209 27 123 chr11 98783457 98783587 -23060269 + B1_Mur4 SINE Alu 4 120 0 7 1338 297 89 0 0 chr11 98784086 98784131 -23059725 + (GGATG)n Simple_repeat Simple_repeat 3 47 0 7 1338 222 171 0 0 chr11 98785127 98785168 -23058688 + (TTA)n Simple_repeat Simple_repeat 2 42 0 7 1338 289 286 0 103 chr11 98785552 98785669 -23058187 + BC1_Mm scRNA scRNA 15 119 -33 7 1338 504 360 113 4 chr11 98785673 98785921 -23057935 + B4 SINE B4 12 286 -6 7 1338 182 309 14 42 chr11 98787574 98787645 -23056211 - MIRm SINE MIR -125 151 83 7 1338 1204 62 7 0 chr11 98788270 98788416 -23055440 - B1_Mm SINE Alu 0 147 1 7 1338 1147 115 17 6 chr11 98788467 98788642 -23055214 + B2_Mm2 SINE B2 13 189 -6 7 1338 244 323 111 25 chr11 98790542 98790704 -23053152 + MIRc SINE MIR 2 177 -91 7 1338 417 127 0 0 chr11 98791485 98791564 -23052292 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1338 269 307 89 32 chr11 98792709 98792867 -23050989 - MIR3 SINE MIR -21 187 21 7 1338 219 344 194 16 chr11 98793087 98793211 -23050645 - MIR3 SINE MIR -28 180 35 7 1338 236 184 82 0 chr11 98793454 98793503 -23050353 - MER91C DNA Tip100 -63 77 25 7 1338 369 43 0 0 chr11 98794220 98794267 -23049589 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1338 459 198 74 67 chr11 98795097 98795232 -23048624 - B1F SINE Alu -2 147 12 7 1338 303 51 0 0 chr11 98795246 98795285 -23048571 - PB1D9 SINE Alu -81 39 1 7 1338 1442 95 16 0 chr11 98795287 98795477 -23048379 - B2_Mm2 SINE B2 0 195 3 7 1338 561 202 122 53 chr11 98795836 98795967 -23047889 - B1F1 SINE Alu -9 140 1 7 1338 351 0 0 0 chr11 98795979 98796018 -23047838 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1338 1296 101 27 0 chr11 98796307 98796495 -23047361 - B2_Mm1a SINE B2 0 193 1 7 1338 292 260 64 113 chr11 98796898 98796935 -23046921 + MT2B LTR ERVL 146 264 -337 7 1338 610 158 14 89 chr11 98796935 98797081 -23046775 + B1_Mur3 SINE Alu 14 148 -1 7 1338 292 260 64 113 chr11 98797081 98797102 -23046754 + MT2B LTR ERVL 265 339 -262 7 1338 777 129 0 26 chr11 98797104 98797255 -23046601 + GA-rich Low_complexity Low_complexity 3 149 0 7 1338 183 336 66 79 chr11 98797811 98797963 -23045893 + MIR3 SINE MIR 23 172 -36 7 1338 324 261 10 80 chr11 98798368 98798468 -23045388 - MIRm SINE MIR -97 179 87 7 1338 209 125 0 24 chr11 98798586 98798627 -23045229 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1338 243 0 0 0 chr11 98800872 98800899 -23042957 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1338 273 57 0 0 chr11 98802593 98802628 -23041228 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1338 201 39 0 0 chr11 98803709 98803735 -23040121 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1338 324 0 0 0 chr11 98804569 98804605 -23039251 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1338 763 256 46 28 chr11 98805784 98806001 -23037855 + ID_B1 SINE B4 1 221 -3 7 1338 183 191 39 78 chr11 98806424 98806475 -23037381 - L2a LINE L2 -24 3402 3354 7 1338 385 239 165 0 chr11 98806472 98806581 -23037275 - MIRm SINE MIR -127 149 23 7 1338 318 26 0 0 chr11 98806679 98806718 -23037138 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1338 938 37 0 0 chr11 98807757 98807864 -23035992 + U6 snRNA snRNA 1 107 0 7 1338 2156 41 3 53 chr11 98807864 98807999 -23035857 + L1_Mus1 LINE L1 6300 6433 -134 7 1338 1652 31 5 0 chr11 98807999 98808190 -23035666 - B2_Mm1a SINE B2 0 193 2 7 1338 2156 41 3 53 chr11 98808190 98808336 -23035520 + L1_Mus1 LINE L1 6434 6567 0 7 1338 195 42 0 0 chr11 98808676 98808700 -23035156 + (CCCCCT)n Simple_repeat Simple_repeat 1 24 0 7 1338 332 294 32 42 chr11 98809172 98809274 -23034582 + PB1D10 SINE Alu 18 112 -5 7 1338 605 334 60 39 chr11 98809372 98809886 -23033970 - L1MB8 LINE L1 -156 6022 5498 7 1338 1147 289 0 14 chr11 98809925 98810209 -23033647 - B4A SINE B4 -8 284 5 7 1338 967 55 0 0 chr11 98810292 98810420 -23033436 - B1_Mus1 SINE Alu -4 144 17 7 1338 381 212 0 108 chr11 98810323 98810434 -23033422 - MT2B LTR ERVL -337 264 166 7 1338 282 116 0 0 chr11 98810514 98810557 -23033299 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 7 1338 1193 60 0 29 chr11 98813381 98813554 -23030302 - B2_Mm2 SINE B2 -26 169 2 7 1338 849 161 58 0 chr11 98813836 98813973 -23029883 + B1_Mus1 SINE Alu 4 148 0 7 1338 213 65 0 0 chr11 98814605 98814636 -23029220 + (C)n Simple_repeat Simple_repeat 1 31 0 7 1338 219 217 0 0 chr11 98815069 98815115 -23028741 + G-rich Low_complexity Low_complexity 1 46 0 7 1338 198 0 0 0 chr11 98816618 98816640 -23027216 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1338 193 250 158 53 chr11 98816833 98816909 -23026947 + MIRc SINE MIR 57 140 -128 7 1338 201 129 0 0 chr11 98816987 98817018 -23026838 + (G)n Simple_repeat Simple_repeat 1 31 0 7 1338 492 18 0 0 chr11 98817571 98817628 -23026228 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 7 1338 330 280 99 10 chr11 98818020 98818121 -23025735 + RSINE1 SINE B4 1 110 -55 7 1338 300 91 0 0 chr11 98818127 98818171 -23025685 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1338 1096 231 14 0 chr11 98818179 98818387 -23025469 - B3 SINE B2 -5 211 1 7 1338 230 147 59 0 chr11 98818392 98818460 -23025396 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 1338 499 240 21 0 chr11 98818476 98818572 -23025284 - PB1D9 SINE Alu -18 102 5 7 1338 1344 75 48 5 chr11 98818664 98818851 -23025005 - B2_Mm2 SINE B2 0 195 1 7 1338 1115 69 21 0 chr11 98818938 98819083 -23024773 - B1_Mur3 SINE Alu 0 149 2 8 1338 980 155 0 7 chr11 98819304 98819453 -23024403 - B1_Mur4 SINE Alu -1 149 2 8 1338 1036 112 77 27 chr11 98819860 98819896 -23023960 - B2_Mm2 SINE B2 -2 193 156 8 1338 552 30 0 0 chr11 98819896 98819962 -23023894 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1338 1036 112 77 27 chr11 98819962 98820108 -23023748 - B2_Mm2 SINE B2 -40 155 3 8 1338 213 238 0 0 chr11 98820114 98820156 -23023700 + T-rich Low_complexity Low_complexity 4 45 0 8 1338 941 144 0 40 chr11 98820156 98820308 -23023548 - B1_Mus1 SINE Alu 0 148 3 8 1338 362 254 72 9 chr11 98820429 98820563 -23023293 - B1_Mur4 SINE Alu -6 144 1 8 1338 21 36 0 0 chr11 98821690 98821718 -23022138 + GC_rich Low_complexity Low_complexity 1 28 0 8 1338 21 57 0 0 chr11 98821794 98821829 -23022027 + GC_rich Low_complexity Low_complexity 1 35 0 8 1338 1330 113 87 15 chr11 98823532 98823738 -23020118 + URR1A DNA MER1_type 5 225 -1 8 1338 214 207 35 0 chr11 98827111 98827169 -23016687 + G-rich Low_complexity Low_complexity 4 63 0 8 1338 205 194 0 0 chr11 98827389 98827425 -23016431 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1338 432 0 0 0 chr11 98827867 98827915 -23015941 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1339 183 42 0 0 chr11 98828819 98828843 -23015013 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1339 696 206 14 34 chr11 98828874 98829020 -23014836 - B1_Mur2 SINE Alu -6 143 1 8 1339 333 47 0 0 chr11 98829557 98829600 -23014256 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1339 212 259 17 0 chr11 98830527 98830585 -23013271 + CT-rich Low_complexity Low_complexity 1 59 0 8 1339 241 270 0 0 chr11 98830774 98830837 -23013019 + C-rich Low_complexity Low_complexity 1 63 0 8 1339 182 33 67 0 chr11 98831347 98831377 -23012479 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 8 1339 645 280 80 5 chr11 98832577 98832764 -23011092 - MER3 DNA MER1_type -4 205 5 8 1339 1248 35 7 0 chr11 98833265 98833410 -23010446 + B1_Mus2 SINE Alu 2 147 0 8 1339 913 168 107 10 chr11 98834008 98834213 -23009643 + URR1A DNA MER1_type 2 226 0 8 1339 200 79 0 50 chr11 98835392 98835432 -23008424 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 8 1339 504 0 0 0 chr11 98835963 98836019 -23007837 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1339 1110 60 167 6 chr11 98836934 98837102 -23006754 - B2_Mm2 SINE B2 0 195 1 8 1339 393 250 87 29 chr11 98837177 98837280 -23006576 + B1_Mur2 SINE Alu 41 149 0 8 1339 704 56 11 0 chr11 98837369 98837458 -23006398 + B2_Mm1t SINE B2 82 171 -22 8 1339 401 135 40 13 chr11 98837457 98837532 -23006324 - B2_Mm2 SINE B2 -4 191 115 8 1339 619 108 0 21 chr11 98837529 98837624 -23006232 + B1_Mus2 SINE Alu 40 132 -15 8 1339 230 290 18 0 chr11 98837698 98837767 -23006089 + ID4 SINE ID 27 96 -56 8 1339 468 303 135 6 chr11 98837876 98838032 -23005824 - B3A SINE B2 -22 176 1 8 1339 560 274 44 13 chr11 98838086 98838245 -23005611 + RSINE1 SINE B4 2 165 0 8 1339 1296 83 44 0 chr11 98838267 98838447 -23005409 + B2_Mm2 SINE B2 1 188 -7 8 1339 852 220 173 39 chr11 98838503 98838619 -23005237 - Lx8 LINE L1 -4 7469 7351 8 1339 644 202 286 0 chr11 98838619 98838787 -23005069 - B3 SINE B2 0 216 1 8 1339 852 220 173 39 chr11 98838787 98838977 -23004879 - Lx8 LINE L1 -123 7350 7123 8 1339 591 271 74 42 chr11 98838987 98839203 -23004653 - B4A SINE B4 -69 223 1 8 1339 395 256 112 8 chr11 98839413 98839547 -23004309 - B1_Mur1 SINE Alu 0 149 2 8 1339 22 56 0 0 chr11 98839617 98839653 -23004203 + AT_rich Low_complexity Low_complexity 1 36 0 8 1339 416 242 11 21 chr11 98839715 98839808 -23004048 - PB1D10 SINE Alu -19 98 7 8 1339 510 207 285 17 chr11 98839838 98840010 -23003846 - ID_B1 SINE B4 -6 218 1 8 1339 934 26 0 0 chr11 98840621 98840734 -23003122 + B1_Mus1 SINE Alu 36 148 0 8 1339 272 332 134 40 chr11 98840752 98841003 -23002853 + L2a LINE L2 2916 3186 -240 8 1339 590 289 53 31 chr11 98841096 98841321 -23002535 + MER33 DNA MER1_type 59 288 -36 8 1339 386 238 54 143 chr11 98841331 98841443 -23002413 + B1_Mm SINE Alu 14 118 -29 8 1339 230 0 0 32 chr11 98841443 98841474 -23002382 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 8 1339 386 238 54 143 chr11 98841474 98841508 -23002348 + B1_Mm SINE Alu 119 147 0 8 1339 1100 37 7 0 chr11 98842364 98842500 -23001356 + B1_Mus2 SINE Alu 11 147 0 8 1339 210 71 0 0 chr11 98844399 98844427 -22999429 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 8 1339 605 234 29 7 chr11 98845636 98845774 -22998082 - B1F SINE Alu -5 144 4 8 1339 186 229 214 0 chr11 98846143 98846213 -22997643 - MIR SINE MIR -69 193 109 8 1339 192 143 0 0 chr11 98846863 98846905 -22996951 + (CACCC)n Simple_repeat Simple_repeat 4 45 0 8 1339 194 246 101 76 chr11 98847500 98847579 -22996277 + L2a LINE L2 3345 3425 -1 8 1339 2217 175 97 34 chr11 98847823 98848320 -22995536 + RLTR12B LTR ERVK 1 528 0 8 1339 215 273 14 57 chr11 98848633 98848703 -22995153 - RSINE1 SINE B4 -94 71 5 8 1339 252 0 0 0 chr11 98848775 98848803 -22995053 + (TC)n Simple_repeat Simple_repeat 2 29 0 8 1339 378 0 0 0 chr11 98848803 98848844 -22995012 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1339 534 235 0 0 chr11 98848859 98848957 -22994899 - RSINE1 SINE B4 -23 142 45 8 1339 21 0 0 0 chr11 98848985 98849006 -22994850 + AT_rich Low_complexity Low_complexity 1 21 0 8 1339 813 215 0 7 chr11 98849010 98849160 -22994696 - B1_Mur2 SINE Alu 0 149 1 8 1339 1148 36 0 0 chr11 98849343 98849480 -22994376 + B1_Mus1 SINE Alu 2 138 -10 8 1339 186 43 0 0 chr11 98849480 98849503 -22994353 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1339 833 194 107 5 chr11 98849516 98849703 -22994153 + B3 SINE B2 1 206 -10 8 1339 1643 26 0 16 chr11 98849799 98849991 -22993865 + B2_Mm1a SINE B2 1 189 -4 8 1339 377 301 39 10 chr11 98850003 98850107 -22993749 + PB1D10 SINE Alu 9 115 -2 8 1339 1218 54 0 0 chr11 98850397 98850544 -22993312 + B1_Mus2 SINE Alu 1 147 0 8 1339 611 195 152 62 chr11 98850712 98850969 -22992887 + L1M5 LINE L1 5543 5822 -342 8 1339 215 273 0 29 chr11 98851091 98851159 -22992697 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 8 1339 580 194 19 0 chr11 98851160 98851263 -22992593 - B1_Mur2 SINE Alu -43 106 2 8 1339 986 212 19 14 chr11 98851263 98851478 -22992378 - B3 SINE B2 0 216 1 8 1339 245 247 64 13 chr11 98851505 98851583 -22992273 - RSINE1 SINE B4 -2 163 82 8 1339 921 71 233 31 chr11 98851718 98851877 -22991979 + B2_Mm2 SINE B2 1 191 -4 8 1339 1149 93 40 28 chr11 98851880 98852057 -22991799 + B2_Mm1t SINE B2 1 179 -14 8 1339 1222 55 0 0 chr11 98852071 98852216 -22991640 - B1_Mus2 SINE Alu -1 146 2 8 1339 207 0 0 0 chr11 98852216 98852239 -22991617 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 8 1339 317 240 260 44 chr11 98852406 98852633 -22991223 - B4A SINE B4 -16 276 1 8 1339 355 108 0 56 chr11 98852896 98852963 -22990893 - B2_Mm2 SINE B2 -107 109 48 8 1339 1267 79 0 113 chr11 98852982 98853195 -22990661 - B2_Mm1a SINE B2 -3 190 2 8 1339 630 178 119 34 chr11 98853195 98853377 -22990479 - B3 SINE B2 -2 214 4 8 1339 479 264 8 15 chr11 98853449 98853580 -22990276 - RSINE1 SINE B4 -31 134 5 8 1339 286 163 0 0 chr11 98853868 98853917 -22989939 - ID_B1 SINE B4 0 224 176 8 1339 404 259 34 59 chr11 98853913 98854032 -22989824 + B1_Mus1 SINE Alu 16 131 -17 8 1339 245 250 0 0 chr11 98854006 98854058 -22989798 - ID SINE ID -170 54 3 8 1339 372 299 10 0 chr11 98855790 98855887 -22987969 - ID_B1 SINE B4 -124 100 3 8 1339 910 163 208 0 chr11 98856030 98856208 -22987648 - B3 SINE B2 -1 215 1 8 1339 21 0 0 0 chr11 98856211 98856232 -22987624 + AT_rich Low_complexity Low_complexity 1 21 0 8 1339 1303 67 0 0 chr11 98856331 98856495 -22987361 + B2_Mm2 SINE B2 2 165 -30 8 1339 34 24 0 0 chr11 98856791 98856832 -22987024 + AT_rich Low_complexity Low_complexity 1 41 0 8 1339 302 213 12 4 chr11 98856855 98856926 -22986930 - PB1D10 SINE Alu -33 84 15 8 1339 739 181 124 6 chr11 98857373 98857534 -22986322 - B3 SINE B2 -7 209 30 8 1339 283 155 0 5 chr11 98857552 98857615 -22986241 - B3 SINE B2 -133 62 1 8 1339 1027 124 0 0 chr11 98857663 98857808 -22986048 - B1_Mur4 SINE Alu -1 149 5 8 1339 1201 34 0 45 chr11 98857827 98857981 -22985875 - B1_Mus2 SINE Alu 0 147 1 8 1339 769 52 267 0 chr11 98858236 98858352 -22985504 - B1_Mus1 SINE Alu 0 148 2 8 1339 590 215 43 36 chr11 98858376 98858516 -22985340 - RSINE1 SINE B4 -10 155 15 8 1339 557 182 168 26 chr11 98859408 98859521 -22984335 + B1_Mur2 SINE Alu 21 149 0 8 1339 783 214 126 0 chr11 98859539 98859721 -22984135 + B3 SINE B2 2 206 -10 8 1339 1269 98 0 67 chr11 98859747 98859955 -22983901 + B2_Mm2 SINE B2 2 195 0 8 1339 1142 89 0 0 chr11 98860008 98860154 -22983702 + B1_Mus2 SINE Alu 2 147 0 8 1339 1105 129 12 17 chr11 98860183 98860356 -22983500 + B2_Mm2 SINE B2 1 172 -23 8 1339 294 333 17 59 chr11 98860308 98860426 -22983430 - RSINE1 SINE B4 -7 158 46 8 1339 446 297 24 48 chr11 98861162 98861286 -22982570 - RSINE1 SINE B4 0 165 45 8 1339 212 184 0 0 chr11 98861311 98861349 -22982507 + T-rich Low_complexity Low_complexity 1 38 0 8 1339 1082 70 0 7 chr11 98861351 98861495 -22982361 - B1_Mus2 SINE Alu -2 145 3 9 1339 233 176 58 19 chr11 98861626 98861678 -22982178 - PB1D10 SINE Alu -2 115 62 9 1339 688 221 52 67 chr11 98861835 98862029 -22981827 + B3A SINE B2 4 194 -4 9 1339 975 130 7 0 chr11 98862858 98863004 -22980852 + B1_Mus1 SINE Alu 1 147 -1 9 1339 655 218 42 0 chr11 98863415 98863557 -22980299 - B1_Mur4 SINE Alu 0 150 3 9 1339 908 206 100 0 chr11 98863557 98863736 -22980120 - B3 SINE B2 -18 198 1 9 1339 711 245 55 30 chr11 98864478 98864680 -22979176 - B3 SINE B2 -7 209 3 9 1339 474 244 0 11 chr11 98864682 98864773 -22979083 - PB1D9 SINE Alu -5 115 26 9 1339 406 211 113 19 chr11 98865715 98865821 -22978035 + PB1D9 SINE Alu 5 120 0 9 1339 1102 104 85 0 chr11 98866021 98866185 -22977671 + B2_Mm2 SINE B2 1 178 -17 9 1339 1170 62 0 7 chr11 98866194 98866341 -22977515 + B1_Mm SINE Alu 2 147 0 9 1339 225 0 0 0 chr11 98866341 98866366 -22977490 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1339 486 293 68 129 chr11 98866565 98866843 -22977013 - B4 SINE B4 -19 273 13 9 1339 236 203 0 78 chr11 98866996 98867060 -22976796 + RLTR25A LTR ERVK 508 566 -537 9 1339 447 125 28 0 chr11 98867012 98867084 -22976772 + PB1D9 SINE Alu 47 120 0 9 1339 987 81 112 26 chr11 98867086 98867238 -22976618 - B2_Mm2 SINE B2 -26 169 5 9 1339 1041 85 85 0 chr11 98867701 98867866 -22975990 + B2_Mm2 SINE B2 1 179 -16 9 1339 1685 32 0 0 chr11 98867866 98868055 -22975801 + B2_Mm1a SINE B2 1 189 -4 9 1339 269 292 83 42 chr11 98868055 98868211 -22975645 - L1M5 LINE L1 -468 5694 5531 9 1339 766 165 0 30 chr11 98869124 98869255 -22974601 + B1_Mus1 SINE Alu 1 127 -21 9 1339 1427 65 16 0 chr11 98869399 98869584 -22974272 + B2_Mm1a SINE B2 2 189 -4 9 1339 815 81 172 31 chr11 98869592 98869720 -22974136 + B1_Mm SINE Alu 2 147 0 9 1339 26 0 0 0 chr11 98869720 98869746 -22974110 + AT_rich Low_complexity Low_complexity 1 26 0 9 1339 656 182 40 47 chr11 98870007 98870157 -22973699 + B1_Mur4 SINE Alu 2 150 0 9 1339 1089 69 7 20 chr11 98870342 98870490 -22973366 + B1_Mus2 SINE Alu 2 147 0 9 1339 231 318 15 0 chr11 98872109 98872175 -22971681 - tRNA-Ala-GCA tRNA tRNA -8 67 1 9 1339 310 162 191 0 chr11 98872593 98872661 -22971195 - PB1D9 SINE Alu -21 99 19 9 1339 331 292 46 19 chr11 98872610 98872718 -22971138 - MT2B LTR ERVL -364 237 127 9 1339 397 266 91 9 chr11 98872789 98872899 -22970957 + Tigger7 DNA MER2_type 2369 2487 -4 9 1339 1040 98 0 0 chr11 98872915 98873048 -22970808 - B1_Mus1 SINE Alu -11 137 5 9 1339 1231 97 42 16 chr11 98873551 98873740 -22970116 + B2_Mm2 SINE B2 1 194 -1 9 1339 363 302 79 51 chr11 98873985 98874201 -22969655 + B4A SINE B4 71 292 0 9 1339 683 184 0 16 chr11 98874333 98874460 -22969396 + B1_Mur3 SINE Alu 12 136 -13 9 1339 1236 85 85 6 chr11 98874856 98875033 -22968823 - B2_Mm2 SINE B2 0 195 5 9 1339 1022 139 73 0 chr11 98875054 98875219 -22968637 - B2_Mm2 SINE B2 -7 188 12 9 1339 547 117 21 11 chr11 98875418 98875510 -22968346 + MTD LTR MaLR 320 412 -7 9 1339 319 246 0 0 chr11 98875510 98875579 -22968277 + MTD-int LTR MaLR 2 70 -1722 9 1339 299 159 62 16 chr11 98875556 98875620 -22968236 + MTD LTR MaLR 312 378 0 9 1339 249 375 111 0 chr11 98876469 98876613 -22967243 + B2_Mm2 SINE B2 3 162 -33 9 1339 331 252 90 10 chr11 98876737 98876837 -22967019 - RSINE1 SINE B4 -13 152 45 9 1339 357 235 75 75 chr11 98876834 98876940 -22966916 + RSINE1 SINE B4 60 165 0 9 1339 1100 95 0 0 chr11 98876964 98877111 -22966745 + B1_Mus1 SINE Alu 2 148 0 9 1339 401 189 27 13 chr11 98877114 98877189 -22966667 + B1_Mur1 SINE Alu 74 149 0 9 1339 35 24 0 0 chr11 98878136 98878178 -22965678 + AT_rich Low_complexity Low_complexity 1 42 0 9 1339 354 276 9 54 chr11 98878596 98878707 -22965149 - B3 SINE B2 -56 160 55 9 1339 622 200 54 60 chr11 98878825 98878974 -22964882 - B1_Mur3 SINE Alu 0 149 2 9 1339 237 186 33 17 chr11 98878978 98879038 -22964818 - PB1D9 SINE Alu -1 119 59 9 1339 340 215 31 0 chr11 98879074 98879139 -22964717 + B1_Mur3 SINE Alu 2 68 -81 9 1339 2362 85 9 0 chr11 98879163 98879479 -22964377 + ORR1A2 LTR MaLR 1 319 -8 9 1339 312 130 0 0 chr11 98879501 98879547 -22964309 - B1_Mus2 SINE Alu -6 141 96 9 1339 358 264 0 14 chr11 98879541 98879614 -22964242 + B1_Mur1 SINE Alu 66 137 -12 9 1339 696 246 162 0 chr11 98879663 98879830 -22964026 - B3 SINE B2 -21 195 2 9 1339 1085 75 0 39 chr11 98879893 98880046 -22963810 - B1_Mus2 SINE Alu 0 147 1 9 1339 1157 69 14 0 chr11 98880479 98880624 -22963232 + B1_Mm SINE Alu 1 147 0 9 1339 278 288 182 12 chr11 98880831 98880996 -22962860 - B2_Mm2 SINE B2 -1 194 2 9 1339 823 94 94 0 chr11 98881323 98881451 -22962405 + B1_Mus1 SINE Alu 7 146 -2 9 1339 452 238 67 38 chr11 98881611 98881716 -22962140 - PB1D9 SINE Alu -1 119 12 9 1339 239 253 59 71 chr11 98881655 98881740 -22962116 - MT2B LTR ERVL -367 234 151 9 1339 923 186 16 32 chr11 98881796 98881815 -22962041 - B2_Mm2 SINE B2 -8 187 170 9 1339 1096 118 89 6 chr11 98881815 98881970 -22961886 + B2_Mm2 SINE B2 2 161 -34 9 1339 204 40 0 0 chr11 98881970 98881995 -22961861 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 9 1339 1255 87 5 42 chr11 98881998 98882191 -22961665 - B2_Mm2 SINE B2 -8 187 2 9 1339 1096 118 89 6 chr11 98882191 98882210 -22961646 + B2_Mm2 SINE B2 162 188 -7 9 1339 923 186 16 32 chr11 98882210 98882379 -22961477 - B2_Mm2 SINE B2 -26 169 5 9 1339 369 261 125 9 chr11 98882405 98882517 -22961339 - PB1 SINE Alu -2 125 1 9 1339 254 286 93 51 chr11 98882519 98882637 -22961219 + MT2B LTR ERVL 156 278 -323 9 1339 453 234 109 66 chr11 98882531 98882668 -22961188 + B1_Mur1 SINE Alu 6 148 -1 9 1339 706 218 7 27 chr11 98882787 98882933 -22960923 - B1_Mur3 SINE Alu -5 144 2 9 1339 276 288 71 124 chr11 98883184 98883198 -22960658 + YREP_Mm Unknown Unknown 163 187 -1625 9 1339 475 325 0 0 chr11 98883198 98883312 -22960544 - ID_B1 SINE B4 -4 220 107 9 1339 276 288 71 124 chr11 98883312 98883410 -22960446 + YREP_Mm Unknown Unknown 188 376 -1436 9 1339 346 298 207 0 chr11 98883410 98883531 -22960325 - B1_Mus2 SINE Alu 0 147 2 9 1339 836 152 58 0 chr11 98883818 98883956 -22959900 - B1_Mur1 SINE Alu -1 148 3 9 1339 411 21 0 0 chr11 98883979 98884027 -22959829 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1339 322 179 0 188 chr11 98884507 98884603 -22959253 - ID4 SINE ID -4 79 2 9 1339 270 250 194 20 chr11 98884620 98884718 -22959138 - PB1 SINE Alu -2 115 1 9 1339 850 137 237 21 chr11 98885953 98886139 -22957717 + URR1A DNA MER1_type 1 226 0 9 1339 829 136 15 8 chr11 98886501 98886634 -22957222 + B1_Mur3 SINE Alu 7 140 -9 9 1339 1149 56 7 0 chr11 98886985 98887127 -22956729 - B1_Mus1 SINE Alu -4 144 2 9 1339 756 234 58 70 chr11 98887251 98887596 -22956260 - RMER17A2 LTR ERVK -523 383 43 9 1339 365 265 48 48 chr11 98887596 98887699 -22956157 - B1F1 SINE Alu -16 133 31 9 1339 1043 167 23 0 chr11 98887848 98888022 -22955834 + RLTR24 LTR ERV1 1 178 -351 9 1339 1638 31 0 15 chr11 98888024 98888219 -22955637 - B2_Mm1a SINE B2 0 193 2 9 1339 1195 128 17 0 chr11 98888260 98888440 -22955416 + B2_Mm1a SINE B2 5 187 -6 9 1339 2490 169 41 132 chr11 98888440 98888802 -22955054 + RLTR24 LTR ERV1 175 528 -1 9 1339 604 201 57 43 chr11 98889149 98889289 -22954567 - RLTR42 LTR ERVK 0 239 98 9 1339 927 55 158 0 chr11 98889293 98889420 -22954436 + B1_Mm SINE Alu 1 147 0 9 1339 234 0 0 0 chr11 98889420 98889446 -22954410 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1339 537 147 59 0 chr11 98889446 98889548 -22954308 - RLTR42 LTR ERVK -131 108 1 9 1339 822 83 67 40 chr11 98889548 98889698 -22954158 - RLTR42-int LTR ERVK 0 5522 5369 9 1339 880 167 35 0 chr11 98889698 98889842 -22954014 + B1_Mur4 SINE Alu 1 149 -1 9 1339 423 179 13 0 chr11 98889878 98889956 -22953900 - RLTR42-int LTR ERVK -139 5383 5305 9 1339 2127 146 29 16 chr11 98889956 98890332 -22953524 - ORR1B1 LTR MaLR -13 381 1 9 1339 4023 172 102 48 chr11 98890342 98891058 -22952798 - RLTR42-int LTR ERVK -226 5296 4520 9 1339 198 0 0 0 chr11 98891058 98891080 -22952776 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 1339 4023 172 102 48 chr11 98891080 98891092 -22952764 - RLTR42-int LTR ERVK -1003 4519 4519 9 1339 1233 61 0 0 chr11 98891092 98891240 -22952616 - B1_Mus1 SINE Alu 0 148 1 9 1339 4023 172 102 48 chr11 98891240 98891390 -22952466 - RLTR42-int LTR ERVK -1003 4519 4369 9 1339 614 140 9 0 chr11 98891392 98891506 -22952350 + (TCC)n Simple_repeat Simple_repeat 1 115 0 9 1339 217 311 35 64 chr11 98891527 98891668 -22952188 - MIRb SINE MIR -82 186 50 9 1339 360 298 0 0 chr11 98892313 98892484 -22951372 + (TG)n Simple_repeat Simple_repeat 2 172 0 9 1339 504 0 0 0 chr11 98892919 98892975 -22950881 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 9 1339 649 134 27 8 chr11 98892985 98893109 -22950747 - B1_Mur2 SINE Alu -21 129 1 9 1339 1020 90 169 0 chr11 98893180 98893346 -22950510 + B2_Mm2 SINE B2 2 195 0 9 1339 393 22 0 0 chr11 98893479 98893525 -22950331 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1339 521 259 0 8 chr11 98893536 98893653 -22950203 - RSINE1 SINE B4 -39 126 11 9 1339 1269 85 0 0 chr11 98893657 98893833 -22950023 + (TTC)n Simple_repeat Simple_repeat 3 178 0 9 1339 558 133 0 0 chr11 98893833 98893923 -22949933 + (TTCTCC)n Simple_repeat Simple_repeat 3 92 0 9 1339 717 307 31 24 chr11 98893939 98894229 -22949627 + B4A SINE B4 1 292 0 9 1339 330 87 0 0 chr11 98894248 98894294 -22949562 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1339 1185 61 7 0 chr11 98894989 98895136 -22948720 - B1_Mus1 SINE Alu 0 148 1 1 1339 1671 37 0 0 chr11 98895145 98895334 -22948522 - B2_Mm1t SINE B2 -3 190 2 1 1339 2059 160 189 9 chr11 98895334 98895795 -22948061 - RMER19B LTR ERVK -16 886 343 1 1339 850 81 0 24 chr11 98895798 98895925 -22947931 - B1_Mus1 SINE Alu 0 148 25 1 1339 238 140 0 0 chr11 98895936 98895986 -22947870 - B3 SINE B2 0 216 167 1 1339 945 203 31 10 chr11 98896107 98896301 -22947555 - B3 SINE B2 -12 204 7 1 1339 414 0 0 0 chr11 98897322 98897368 -22946488 + (TGG)n Simple_repeat Simple_repeat 3 48 0 1 1339 509 125 68 0 chr11 98897368 98897456 -22946400 + PB1D9 SINE Alu 16 109 -11 1 1339 317 24 24 0 chr11 98897456 98897498 -22946358 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1339 374 133 324 39 chr11 98897498 98897511 -22946345 + B1_Mus1 SINE Alu 137 147 -1 1 1339 1255 34 7 0 chr11 98898047 98898193 -22945663 + B1_Mus2 SINE Alu 1 147 0 1 1339 482 331 46 11 chr11 98898334 98898508 -22945348 + MIR SINE MIR 1 180 -82 1 1339 423 38 0 0 chr11 98898625 98898678 -22945178 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 1339 607 155 144 17 chr11 98898678 98898796 -22945060 - B1_Mur2 SINE Alu -14 135 3 1 1339 328 207 322 0 chr11 98899189 98899276 -22944580 - PB1D10 SINE Alu 0 117 3 1 1339 298 282 0 53 chr11 98899296 98899371 -22944485 - ID4_ SINE ID -11 72 2 1 1339 499 247 24 91 chr11 98899540 98899705 -22944151 + B3A SINE B2 43 196 -2 1 1339 1256 97 63 0 chr11 98899713 98899888 -22943968 + B2_Mm2 SINE B2 3 188 -7 1 1339 618 248 14 21 chr11 98899895 98900039 -22943817 + B1_Mur1 SINE Alu 6 148 -1 1 1339 184 59 59 0 chr11 98901046 98901080 -22942776 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1339 421 351 20 0 chr11 98901694 98901842 -22942014 - MER91B DNA Tip100 -36 154 4 1 1339 381 198 0 0 chr11 98903505 98903586 -22940270 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1339 216 310 12 12 chr11 98903602 98903687 -22940169 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1339 360 0 0 0 chr11 98903720 98903760 -22940096 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1339 759 100 0 0 chr11 98904732 98904842 -22939014 + (GGA)n Simple_repeat Simple_repeat 1 110 0 1 1339 195 69 0 0 chr11 98906803 98906832 -22937024 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 1 1339 643 255 7 0 chr11 98907740 98907881 -22935975 + ID_B1 SINE B4 82 223 -1 1 1339 180 0 0 0 chr11 98908290 98908310 -22935546 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1339 860 168 7 7 chr11 98909937 98910081 -22933775 - B1_Mus1 SINE Alu -1 147 4 1 1339 625 267 0 7 chr11 98910101 98910248 -22933608 - B1F2 SINE Alu -2 147 2 1 1339 1502 49 11 0 chr11 98911718 98911903 -22931953 - B2_Mm1t SINE B2 -6 187 1 1 1339 925 133 7 0 chr11 98911952 98912095 -22931761 + B1_Mur4 SINE Alu 7 150 0 1 1339 297 300 0 14 chr11 98912275 98912346 -22931510 - B1F2 SINE Alu -74 75 6 1 1339 225 316 0 106 chr11 98912285 98912370 -22931486 - B4A SINE B4 -142 150 75 1 1339 240 35 0 0 chr11 98913183 98913212 -22930644 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1 1339 189 321 0 0 chr11 98913217 98913270 -22930586 - L2a LINE L2 -15 3411 3359 1 1339 451 125 23 0 chr11 98914551 98914582 -22929274 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1339 828 0 0 0 chr11 98914582 98914674 -22929182 + (TTCTC)n Simple_repeat Simple_repeat 3 94 0 1 1339 451 125 23 0 chr11 98914674 98914730 -22929126 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1339 405 136 0 0 chr11 98914739 98914805 -22929051 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1339 270 0 0 0 chr11 98915274 98915304 -22928552 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1339 1407 85 37 0 chr11 98915390 98915578 -22928278 - B2_Mm2 SINE B2 0 195 1 1 1339 958 83 105 0 chr11 98915582 98915715 -22928141 - B1_Mus1 SINE Alu 0 148 2 1 1339 919 85 0 0 chr11 98915719 98915849 -22928007 - B2_Mm2 SINE B2 -31 164 35 1 1339 888 205 0 13 chr11 98916210 98916368 -22927488 + RSINE1 SINE B4 3 158 -7 1 1339 2247 120 3 36 chr11 98917877 98918214 -22925642 - ORR1A3 LTR MaLR 0 326 1 1 1339 2195 144 61 6 chr11 98918973 98919371 -22924485 + MTC LTR MaLR 1 403 -18 1 1339 712 160 92 0 chr11 98919421 98919540 -22924316 + B1_Mur2 SINE Alu 2 131 -18 1 1339 476 125 62 0 chr11 98919657 98919737 -22924119 + B1_Mur4 SINE Alu 53 137 -13 1 1339 396 0 0 0 chr11 98919738 98919782 -22924074 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1339 683 24 0 12 chr11 98919858 98919936 -22923920 + (TTC)n Simple_repeat Simple_repeat 1 78 0 1 1339 1292 72 0 11 chr11 98919936 98920118 -22923738 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1339 683 24 0 12 chr11 98920118 98920125 -22923731 + (TTC)n Simple_repeat Simple_repeat 3 9 0 1 1339 669 268 27 77 chr11 98920126 98920348 -22923508 - B3 SINE B2 -5 211 1 1 1339 224 253 67 78 chr11 98920678 98920691 -22923165 + ID_B1 SINE B4 78 131 -93 1 1339 244 271 84 14 chr11 98920691 98920762 -22923094 + PB1D10 SINE Alu 5 80 -37 1 1339 351 235 7 143 chr11 98922471 98922625 -22921231 + MT2B LTR ERVL 132 264 -337 1 1339 909 121 7 7 chr11 98922518 98922660 -22921196 + B1_Mur2 SINE Alu 8 149 0 1 1339 1374 80 32 5 chr11 98922709 98922898 -22920958 + B2_Mm2 SINE B2 2 195 0 1 1339 211 294 213 0 chr11 98923680 98923816 -22920040 + L2b LINE L2 3019 3183 -192 1 1339 564 220 59 22 chr11 98923861 98923996 -22919860 - B1F SINE Alu -1 148 9 1 1339 925 131 14 0 chr11 98924039 98924184 -22919672 - B1_Mus2 SINE Alu 0 147 1 1 1339 309 216 94 0 chr11 98924202 98924313 -22919543 + L2b LINE L2 3258 3387 0 1 1339 229 332 92 39 chr11 98924735 98924942 -22918914 + MLT1B LTR MaLR 149 366 -24 1 1339 662 270 16 43 chr11 98925322 98925508 -22918348 - B3 SINE B2 -6 210 30 1 1339 892 112 97 0 chr11 98925509 98925643 -22918213 + B1_Mus1 SINE Alu 2 148 0 1 1339 288 77 0 0 chr11 98925707 98925746 -22918110 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1339 1306 83 38 22 chr11 98925951 98926136 -22917720 - B2_Mm2 SINE B2 -6 189 2 1 1339 192 197 100 57 chr11 98926251 98926321 -22917535 + MIR SINE MIR 108 180 -82 1 1339 226 274 4 0 chr11 98926376 98926436 -22917420 + B1F SINE Alu 39 99 -21 1 1339 522 281 99 68 chr11 98926448 98926669 -22917187 + B4A SINE B4 8 235 -57 1 1339 405 0 0 0 chr11 98926706 98926751 -22917105 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1339 674 193 47 20 chr11 98926759 98926907 -22916949 + B3 SINE B2 15 166 -50 1 1339 360 0 0 0 chr11 98927550 98927590 -22916266 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1339 1168 61 0 26 chr11 98927822 98927973 -22915883 - B1_Mus1 SINE Alu 0 148 2 1 1339 375 23 0 0 chr11 98928671 98928715 -22915141 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1339 782 250 70 24 chr11 98928743 98928956 -22914900 - ID_B1 SINE B4 -1 223 1 1 1339 237 132 0 0 chr11 98929771 98929809 -22914047 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1 1339 1042 227 85 22 chr11 98929837 98930107 -22913749 - B4A SINE B4 -2 290 4 1 1339 723 24 0 0 chr11 98930415 98930500 -22913356 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 1 1339 5907 101 82 6 chr11 98930500 98931390 -22912466 + RMER17B LTR ERVK 1 958 0 1 1339 303 169 21 10 chr11 98931390 98931486 -22912370 + CT-rich Low_complexity Low_complexity 4 100 0 1 1339 290 203 0 59 chr11 98931489 98931557 -22912299 - B1_Mur1 SINE Alu -21 128 65 1 1339 661 224 0 0 chr11 98931523 98931648 -22912208 - B1F2 SINE Alu -22 127 3 1 1339 318 67 0 0 chr11 98933417 98933462 -22910394 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1339 578 144 0 10 chr11 98934081 98934179 -22909677 - B1_Mur4 SINE Alu -52 98 2 1 1339 26 0 0 0 chr11 98934179 98934205 -22909651 + AT_rich Low_complexity Low_complexity 1 26 0 1 1339 1297 146 65 19 chr11 98934448 98934664 -22909192 - URR1A DNA MER1_type 0 226 1 1 1339 201 39 0 0 chr11 98934749 98934775 -22909081 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1339 676 253 143 16 chr11 98937111 98937300 -22906556 + ID_B1 SINE B4 4 216 -8 1 1339 334 243 0 13 chr11 98937313 98937388 -22906468 + RSINE1 SINE B4 6 79 -86 1 1339 1122 101 0 12 chr11 98937419 98937590 -22906266 - B2_Mm2 SINE B2 -25 170 2 1 1339 1239 67 0 0 chr11 98937593 98937757 -22906099 - B2_Mm2 SINE B2 -31 164 1 1 1339 1174 44 0 0 chr11 98937787 98937924 -22905932 + B1_Mus2 SINE Alu 1 137 -10 1 1339 188 34 0 33 chr11 98937924 98937954 -22905902 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1339 2284 129 14 186 chr11 98938796 98939010 -22904846 - RMER4A LTR ERVK 0 466 324 1 1339 282 29 0 0 chr11 98939010 98939045 -22904811 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1339 995 143 0 0 chr11 98939045 98939185 -22904671 - B1_Mus1 SINE Alu -8 140 1 1 1339 2284 129 14 186 chr11 98939185 98939532 -22904324 - RMER4A LTR ERVK -143 323 2 1 1339 698 197 116 10 chr11 98940894 98941068 -22902788 - B3 SINE B2 -5 190 1 1 1339 967 82 89 7 chr11 98941810 98941937 -22901919 + B1_Mus1 SINE Alu 1 139 -9 1 1339 186 71 0 0 chr11 98941937 98941965 -22901891 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1339 475 344 36 0 chr11 98942344 98942539 -22901317 + MIRb SINE MIR 21 222 -46 1 1339 360 0 0 0 chr11 98942722 98942762 -22901094 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1339 574 246 111 50 chr11 98942778 98942958 -22900898 - ID_B1 SINE B4 -33 191 1 1 1339 220 318 12 12 chr11 98943171 98943257 -22900599 - MIRc SINE MIR -113 155 70 1 1339 201 213 65 16 chr11 98944023 98944085 -22899771 + MIRm SINE MIR 120 184 -92 1 1339 272 245 71 0 chr11 98944572 98944670 -22899186 + PB1D7 SINE Alu 11 115 -5 1 1339 817 140 7 7 chr11 98945488 98945639 -22898217 + GA-rich Low_complexity Low_complexity 3 153 0 1 1339 277 220 0 0 chr11 98945639 98945698 -22898158 + ID_B1 SINE B4 164 222 -2 1 1339 382 293 18 37 chr11 98945944 98946107 -22897749 + MER63D DNA AcHobo 6 165 -896 1 1339 254 96 35 88 chr11 98946147 98946204 -22897652 + B1F SINE Alu 96 149 0 1 1339 321 249 381 6 chr11 98946252 98946434 -22897422 + MER63D DNA AcHobo 137 385 -676 1 1339 189 0 0 0 chr11 98946715 98946736 -22897120 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1339 317 281 0 50 chr11 98947604 98947705 -22896151 + MIRc SINE MIR 63 158 -110 1 1339 242 266 48 15 chr11 98947825 98947930 -22895926 - MIR SINE MIR -38 230 118 1 1339 420 185 194 0 chr11 98948905 98949013 -22894843 + ID_B1 SINE B4 86 214 -10 1 1339 327 25 0 0 chr11 98950822 98950862 -22892994 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1339 503 274 114 23 chr11 98951996 98952295 -22891561 - L1MC LINE L1 -2326 3820 3495 1 1339 506 236 175 34 chr11 98952368 98952574 -22891282 + MER2 DNA MER2_type 106 340 -5 1 1339 404 253 32 0 chr11 98952659 98952754 -22891102 - PB1D10 SINE Alu -1 116 19 1 1339 452 272 123 71 chr11 98953034 98953204 -22890652 + MTD LTR MaLR 1 179 -240 1 1339 228 67 0 0 chr11 98953206 98953236 -22890620 + (AGCTG)n Simple_repeat Simple_repeat 4 33 0 1 1339 573 234 22 7 chr11 98953266 98953404 -22890452 + MTD LTR MaLR 280 419 0 1 1339 615 134 0 0 chr11 98953405 98953524 -22890332 + (TG)n Simple_repeat Simple_repeat 1 119 0 1 1339 210 290 129 0 chr11 98953543 98953636 -22890220 - B4A SINE B4 -177 115 11 1 1339 250 341 156 0 chr11 98953802 98953937 -22889919 + MER33 DNA MER1_type 1 156 -168 1 1339 595 248 7 29 chr11 98953977 98954114 -22889742 - RSINE1 SINE B4 -21 144 11 1 1339 286 284 0 0 chr11 98954129 98954217 -22889639 + MER33 DNA MER1_type 156 243 -81 1 1339 231 237 0 0 chr11 98954210 98954269 -22889587 - MLT1D LTR MaLR -21 606 548 1 1339 420 347 94 43 chr11 98954283 98954635 -22889221 - MLT1D LTR MaLR -131 374 5 1 1339 180 0 0 0 chr11 98954765 98954785 -22889071 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1339 243 344 62 8 chr11 98954906 98955035 -22888821 + LTR33A LTR ERVL 75 210 -310 1 1339 618 153 58 122 chr11 98955377 98955466 -22888390 - B1_Mus1 SINE Alu 0 148 53 1 1339 1306 115 16 0 chr11 98955466 98955657 -22888199 + B2_Mm2 SINE B2 1 194 -1 1 1339 618 153 58 122 chr11 98955657 98955723 -22888133 - B1_Mus1 SINE Alu -96 52 3 1 1339 1082 88 19 117 chr11 98955773 98955979 -22887877 + B2_Mm2 SINE B2 1 186 -9 1 1339 1876 150 56 17 chr11 98956014 98956374 -22887482 - ORR1D1 LTR MaLR 0 374 1 1 1339 252 59 0 0 chr11 98956599 98956633 -22887223 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 1 1339 322 250 29 0 chr11 98956633 98956701 -22887155 - PB1D10 SINE Alu -8 109 40 1 1339 1945 134 2 120 chr11 98956702 98957144 -22886712 + RMER10B LTR ERVL 9 398 0 1 1339 189 171 0 0 chr11 98957520 98957555 -22886301 + CT-rich Low_complexity Low_complexity 2 36 0 1 1339 255 122 0 0 chr11 98957552 98957601 -22886255 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1339 930 101 0 0 chr11 98957601 98957740 -22886116 - B1_Mur4 SINE Alu 0 150 12 1 1339 1732 272 78 63 chr11 98958145 98958863 -22884993 - Charlie7 DNA MER1_type -64 2548 1820 1 1339 336 364 58 92 chr11 98959025 98959093 -22884763 - Charlie7 DNA MER1_type -2175 437 383 1 1339 297 0 0 0 chr11 98959098 98959131 -22884725 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1339 583 254 0 7 chr11 98959131 98959260 -22884596 - B1F SINE Alu -16 133 6 1 167 336 364 58 92 chr11 98959260 98959584 -22884272 - Charlie7 DNA MER1_type -2230 382 58 1 1340 334 254 192 24 chr11 98960384 98960509 -22883347 + RSINE1 SINE B4 4 149 -16 1 1340 717 161 16 0 chr11 98960594 98960718 -22883138 + B1_Mus2 SINE Alu 5 130 -17 1 1340 677 93 0 0 chr11 98960765 98960862 -22882994 + B2_Mm2 SINE B2 2 98 -97 1 1340 417 298 110 57 chr11 98960920 98961148 -22882708 + MLT1E2 LTR MaLR 64 303 -145 1 1340 380 240 57 9 chr11 98961214 98961319 -22882537 - PB1D7 SINE Alu -10 110 1 1 1340 418 302 12 19 chr11 98961327 98961476 -22882380 + MLT1E2 LTR MaLR 404 607 -73 1 1340 417 200 0 23 chr11 98961490 98961577 -22882279 + B4 SINE B4 1 85 -207 1 1340 645 149 117 22 chr11 98961587 98961724 -22882132 + B1_Mur4 SINE Alu 1 150 0 1 1340 215 313 0 97 chr11 98961724 98961750 -22882106 + BC1_Mm scRNA scRNA 89 112 -40 1 1340 496 243 9 0 chr11 98961751 98961862 -22881994 + Lx7 LINE L1 7166 7277 -419 1 1340 257 275 0 0 chr11 98961912 98962003 -22881853 + T-rich Low_complexity Low_complexity 1 91 0 1 1340 273 159 0 16 chr11 98962028 98962092 -22881764 + Lx7 LINE L1 7615 7677 -19 1 1340 529 263 20 55 chr11 98962124 98962325 -22881531 + B4 SINE B4 85 278 -14 1 1340 421 383 0 0 chr11 98962371 98962551 -22881305 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1340 819 0 0 0 chr11 98962582 98962673 -22881183 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1 1340 1078 58 0 0 chr11 98962673 98962811 -22881045 - B1_Mus1 SINE Alu -10 138 1 1 1340 360 43 0 0 chr11 98962846 98962892 -22880964 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 1 1340 510 322 122 53 chr11 98962924 98963226 -22880630 - MER115 DNA Tip100 -59 634 312 1 1340 809 255 42 25 chr11 98963425 98963666 -22880190 - L1MB5 LINE L1 -63 6111 5867 1 1340 195 273 100 69 chr11 98964169 98964299 -22879557 + L4 LINE RTE 1290 1423 -606 1 1340 505 193 141 16 chr11 98965095 98965216 -22878640 - B1_Mus2 SINE Alu 0 147 12 1 1340 1208 27 7 0 chr11 98965216 98965362 -22878494 + B1_Mus2 SINE Alu 1 147 0 1 1340 207 0 0 0 chr11 98965364 98965387 -22878469 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1340 985 234 5 18 chr11 98965498 98965716 -22878140 + B3 SINE B2 2 216 0 1 1340 270 125 0 0 chr11 98965743 98965791 -22878065 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1340 448 247 97 43 chr11 98965791 98965977 -22877879 - B3 SINE B2 -11 205 10 1 1340 884 90 259 63 chr11 98965984 98966173 -22877683 - URR1A DNA MER1_type 0 226 1 1 1340 247 254 15 0 chr11 98966305 98966372 -22877484 + L2b LINE L2 3299 3366 -9 1 1340 249 318 129 25 chr11 98966988 98967330 -22876526 - L2b LINE L2 -256 3119 2739 1 1340 1492 52 0 5 chr11 98969308 98969500 -22874356 - B2_Mm1a SINE B2 -2 191 1 1 1340 199 345 49 24 chr11 98970012 98970135 -22873721 + MIR SINE MIR 77 201 -67 1 1340 1019 115 0 13 chr11 98970246 98970396 -22873460 + B1_Mus1 SINE Alu 1 148 0 1 1340 24 67 0 0 chr11 98970407 98970452 -22873404 + AT_rich Low_complexity Low_complexity 1 45 0 1 1340 690 153 67 8 chr11 98970568 98970687 -22873169 - B1_Mur1 SINE Alu -12 137 12 1 1340 515 229 28 0 chr11 98971017 98971126 -22872730 + B1_Mur1 SINE Alu 35 146 -3 1 1340 183 42 0 0 chr11 98971616 98971640 -22872216 + (G)n Simple_repeat Simple_repeat 1 24 0 1 1340 705 247 38 8 chr11 98972107 98972302 -22871554 + B3 SINE B2 2 196 -2 1 1340 1188 79 0 91 chr11 98972308 98972516 -22871340 + B2_Mm2 SINE B2 2 190 -5 1 1340 439 253 0 0 chr11 98973076 98973171 -22870685 + B4A SINE B4 1 95 -197 1 1340 1219 82 53 0 chr11 98973172 98973343 -22870513 + B2_Mm2 SINE B2 2 181 -14 1 1340 216 0 0 0 chr11 98973395 98973419 -22870437 + (CAAAC)n Simple_repeat Simple_repeat 4 27 0 1 1340 879 229 31 26 chr11 98973432 98973625 -22870231 + B3 SINE B2 3 196 -2 1 1340 802 152 129 43 chr11 98973634 98973820 -22870036 + B3 SINE B2 15 216 0 1 1340 427 97 409 0 chr11 98974273 98974366 -22869490 - URR1A DNA MER1_type -95 131 1 1 1340 416 356 61 42 chr11 98974622 98974886 -22868970 + HAL1 LINE L1 786 1054 -1453 1 1340 315 0 0 0 chr11 98974905 98974940 -22868916 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1340 757 190 0 11 chr11 98975078 98975259 -22868597 + CT-rich Low_complexity Low_complexity 2 180 0 1 1340 368 294 195 53 chr11 98975293 98975483 -22868373 - ID_B1 SINE B4 -2 222 6 1 1340 384 316 97 59 chr11 98975490 98975731 -22868125 + HAL1 LINE L1 1221 1477 -1030 1 1340 592 251 128 28 chr11 98975731 98975911 -22867945 + B3A SINE B2 1 198 0 1 1340 384 316 97 59 chr11 98975911 98976073 -22867783 + HAL1 LINE L1 1478 1639 -868 1 1340 703 118 9 0 chr11 98976083 98976202 -22867654 + B1_Mur3 SINE Alu 1 128 -22 1 1340 201 94 0 0 chr11 98976203 98976235 -22867621 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1340 222 220 0 0 chr11 98976584 98976634 -22867222 + PB1D9 SINE Alu 5 54 -66 1 1340 474 162 0 0 chr11 98976634 98976834 -22867022 + (CAGAGA)n Simple_repeat Simple_repeat 1 200 0 1 1340 546 146 47 28 chr11 98976837 98976930 -22866926 + B1_Mur4 SINE Alu 43 140 -10 1 1340 540 45 0 0 chr11 98976930 98976997 -22866859 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1340 546 146 47 28 chr11 98976997 98977009 -22866847 + B1_Mur4 SINE Alu 141 150 0 1 1340 258 343 27 67 chr11 98977349 98977499 -22866357 + MLT1J LTR MaLR 350 493 -19 1 1340 910 158 220 0 chr11 98977707 98977884 -22865972 - B3 SINE B2 0 216 1 1 1340 312 350 60 24 chr11 98978092 98978259 -22865597 + LTR79 LTR ERVL 308 480 -47 1 1340 261 0 0 0 chr11 98978264 98978293 -22865563 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1340 586 238 159 21 chr11 98978478 98978667 -22865189 - B3 SINE B2 0 216 2 1 1340 1000 88 127 17 chr11 98978693 98978866 -22864990 - B2_Mm2 SINE B2 -2 193 2 1 1340 254 325 12 0 chr11 98979113 98979193 -22864663 + B4A SINE B4 70 150 -142 1 1340 518 276 45 0 chr11 98979136 98979270 -22864586 + B1F1 SINE Alu 9 148 -1 1 1340 562 274 25 40 chr11 98979909 98980107 -22863749 - B3A SINE B2 -1 197 3 1 1340 582 158 61 9 chr11 98980140 98980255 -22863601 + B1_Mus1 SINE Alu 27 147 -1 1 1340 234 0 0 0 chr11 98980261 98980287 -22863569 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1340 294 289 11 32 chr11 98980366 98980459 -22863397 + MLT1F2 LTR MaLR 18 108 -359 1 1340 439 210 10 10 chr11 98980813 98980914 -22862942 - MER53 DNA hAT -92 101 1 1 1340 216 97 0 0 chr11 98981098 98981129 -22862727 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1340 267 25 0 48 chr11 98981187 98981221 -22862635 - B1_Mus1 SINE Alu -97 51 19 1 1340 438 20 0 0 chr11 98981221 98981272 -22862584 + (CCA)n Simple_repeat Simple_repeat 2 52 0 1 1340 210 113 0 145 chr11 98981279 98981298 -22862558 - B4A SINE B4 -189 103 84 1 1340 347 207 624 15 chr11 98981510 98981643 -22862213 + B3A SINE B2 2 215 -1 1 1340 337 244 86 138 chr11 98981676 98981808 -22862048 + B1F SINE Alu 6 138 -11 1 1340 237 65 0 0 chr11 98981808 98981839 -22862017 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1340 337 244 86 138 chr11 98981839 98981858 -22861998 + B1F SINE Alu 139 149 0 1 1340 916 257 187 77 chr11 98982578 98983021 -22860835 + MLT1F2 LTR MaLR 74 565 -4 1 1340 528 16 0 0 chr11 98983071 98983132 -22860724 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1340 217 292 103 10 chr11 98983368 98983465 -22860391 + RSINE1 SINE B4 45 150 -15 1 1340 288 0 0 0 chr11 98983485 98983517 -22860339 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1340 371 111 0 0 chr11 98983605 98983659 -22860197 - B2_Mm2 SINE B2 -94 101 48 1 1340 1274 74 11 0 chr11 98983673 98983848 -22860008 - B2_Mm1t SINE B2 -14 179 3 1 1340 274 299 10 30 chr11 98984347 98984447 -22859409 - L1M5 LINE L1 -458 5666 5569 1 1340 366 260 101 16 chr11 98984703 98984832 -22859024 - ID_B1 SINE B4 -3 221 82 1 1340 266 216 149 50 chr11 98984835 98984953 -22858903 + MIRb SINE MIR 51 178 -90 1 1340 863 154 132 5 chr11 98984965 98985154 -22858702 + B3 SINE B2 1 213 -3 1 1340 420 20 0 0 chr11 98985484 98985533 -22858323 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1340 333 0 0 0 chr11 98986790 98986827 -22857029 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1340 254 244 71 24 chr11 98986835 98986919 -22856937 - ID_B1 SINE B4 -8 216 129 1 1340 490 206 263 0 chr11 98986988 98987163 -22856693 + B4A SINE B4 70 290 -2 1 1340 198 118 0 0 chr11 98987205 98987239 -22856617 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 1 1340 396 0 0 0 chr11 98987245 98987289 -22856567 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1340 351 0 0 0 chr11 98987289 98987327 -22856529 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1340 228 221 14 42 chr11 98987371 98987442 -22856414 - MLT1J2 LTR MaLR 0 448 380 1 1340 320 324 46 41 chr11 98989977 98990173 -22853683 + MIR SINE MIR 34 230 -32 1 1340 729 0 0 0 chr11 98990232 98990313 -22853543 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 1 1340 992 204 23 19 chr11 98991319 98991534 -22852322 + B3 SINE B2 1 216 0 1 1340 324 127 0 0 chr11 98991629 98991684 -22852172 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1340 231 61 0 0 chr11 98992031 98992064 -22851792 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1340 1200 69 0 0 chr11 98992296 98992502 -22851354 + (TG)n Simple_repeat Simple_repeat 1 206 0 1 1340 225 0 0 0 chr11 98993977 98994002 -22849854 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1340 1001 120 72 33 chr11 98994135 98994316 -22849540 - B2_Mm2 SINE B2 -6 189 2 1 1340 285 98 0 0 chr11 98994476 98994517 -22849339 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1340 369 62 0 0 chr11 98994999 98995047 -22848809 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1340 255 83 16 32 chr11 98995161 98995223 -22848633 + (TGG)n Simple_repeat Simple_repeat 2 62 0 1 1340 663 222 115 16 chr11 98995559 98995751 -22848105 - ID_B1 SINE B4 -10 214 4 1 1340 488 186 19 19 chr11 98995764 98995868 -22847988 - PB1D10 SINE Alu -5 112 9 1 1340 294 305 83 25 chr11 98996315 98996436 -22847420 - MIRb SINE MIR -87 189 62 1 1340 261 0 0 0 chr11 98996898 98996927 -22846929 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1340 1069 143 0 6 chr11 98997121 98997290 -22846566 + B2_Mm2 SINE B2 2 169 -26 1 1340 405 0 0 0 chr11 98997293 98997338 -22846518 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1340 764 226 113 0 chr11 98997352 98997520 -22846336 + B3 SINE B2 25 211 -5 1 1340 342 0 0 0 chr11 98997678 98997716 -22846140 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1340 215 255 110 28 chr11 98998435 98998544 -22845312 + MIRb SINE MIR 34 151 -117 1 1340 1047 82 0 27 chr11 98998577 98998727 -22845129 + B1_Mus2 SINE Alu 2 147 0 1 1340 302 61 0 20 chr11 98998740 98998790 -22845066 + (CAGA)n Simple_repeat Simple_repeat 1 49 0 1 1340 198 309 34 68 chr11 98998838 98998956 -22844900 + MIR3 SINE MIR 57 170 -38 1 1340 5115 31 34 5 chr11 98999350 99000000 -22843856 - L1_Mus1 LINE L1 0 6567 5899 1 1340 3009 90 10 0 chr11 99000015 99000428 -22843428 - L1_Mm LINE L1 0 5883 5467 1 1340 706 164 0 0 chr11 99000918 99001028 -22842828 - B1_Mur2 SINE Alu -35 114 5 2 1340 1175 29 0 0 chr11 99001317 99001453 -22842403 - B1_Mus1 SINE Alu -12 136 1 3 1340 441 50 0 0 chr11 99001525 99001585 -22842271 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1340 575 233 155 85 chr11 99002086 99002344 -22841512 - B4A SINE B4 -7 285 10 5 1340 31 0 0 0 chr11 99002379 99002410 -22841446 + AT_rich Low_complexity Low_complexity 1 31 0 6 1340 747 224 0 0 chr11 99002410 99002557 -22841299 + B1_Mus1 SINE Alu 2 148 0 7 1340 830 222 108 0 chr11 99002575 99002769 -22841087 - B3 SINE B2 0 216 2 8 1340 303 345 18 0 chr11 99002826 99002936 -22840920 - MIR SINE MIR -36 226 115 9 1340 419 299 60 0 chr11 99003050 99003184 -22840672 - MIR SINE MIR -117 145 4 9 1340 360 0 0 0 chr11 99003414 99003454 -22840402 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1340 481 293 19 25 chr11 99004593 99004754 -22839102 + MLT1A1 LTR MaLR 2 161 -247 1 1340 324 290 11 11 chr11 99004771 99004865 -22838991 + MLT1A1 LTR MaLR 314 407 -1 1 1340 212 315 75 43 chr11 99007426 99007519 -22836337 + MER5A DNA MER1_type 66 161 -28 1 1340 781 249 48 24 chr11 99007556 99007762 -22836094 + B3 SINE B2 1 211 -5 1 1340 1074 145 0 11 chr11 99007775 99007949 -22835907 + B2_Mm2 SINE B2 23 194 -1 1 1340 208 120 40 0 chr11 99010655 99010705 -22833151 + C-rich Low_complexity Low_complexity 3 54 0 1 1340 516 280 88 39 chr11 99013642 99013824 -22830032 - B4A SINE B4 -81 211 21 1 1340 287 266 97 12 chr11 99014796 99014899 -22828957 + MER63B DNA AcHobo 325 438 -623 1 1340 582 63 0 0 chr11 99015034 99015113 -22828743 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 1 1340 187 56 83 0 chr11 99015718 99015754 -22828102 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 1340 252 0 0 0 chr11 99016984 99017012 -22826844 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1340 387 0 0 0 chr11 99017012 99017055 -22826801 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2 1340 227 226 77 77 chr11 99017055 99017139 -22826717 - RLTR25B LTR ERVK -502 526 442 2 1340 714 200 0 0 chr11 99017062 99017177 -22826679 - B1_Mur3 SINE Alu -33 116 2 2 1340 214 273 30 0 chr11 99017270 99017336 -22826520 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1340 427 275 101 91 chr11 99017351 99017627 -22826229 - B4A SINE B4 -12 280 2 2 1340 371 325 61 24 chr11 99017716 99017842 -22826014 - MER54B LTR ERVL -620 173 41 2 1340 1371 77 22 6 chr11 99017842 99018024 -22825832 + B2_Mm2 SINE B2 1 185 -10 2 1340 371 325 61 24 chr11 99018024 99018061 -22825795 - MER54B LTR ERVL -753 40 4 2 1340 426 322 42 7 chr11 99018066 99018210 -22825646 + LTR33A LTR ERVL 48 196 -324 2 1340 813 252 100 74 chr11 99018212 99018271 -22825585 - L1MB7 LINE L1 -5 6179 6134 2 1340 1153 196 9 0 chr11 99018271 99018485 -22825371 - B3 SINE B2 0 216 1 3 1340 813 252 100 74 chr11 99018485 99018914 -22824942 - L1MB7 LINE L1 -51 6133 5678 2 1340 857 216 36 49 chr11 99018932 99019156 -22824700 - ORR1D1 LTR MaLR 0 374 154 3 1340 796 227 0 13 chr11 99019179 99019335 -22824521 - RSINE1 SINE B4 -10 155 2 3 1340 369 0 0 0 chr11 99019369 99019410 -22824446 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 3 1340 585 202 69 8 chr11 99019519 99019649 -22824207 - MLT1A LTR MaLR -5 369 232 3 1340 3627 141 19 11 chr11 99019724 99019811 -22824045 - RLTR20A2 LTR ERVK -1 577 491 3 1340 369 0 0 0 chr11 99019811 99019852 -22824004 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1340 3627 141 19 11 chr11 99019852 99020336 -22823520 - RLTR20A2 LTR ERVK -88 490 2 3 1340 823 183 23 19 chr11 99020515 99020695 -22823161 + B3 SINE B2 1 183 -12 3 1340 213 39 0 0 chr11 99020695 99020721 -22823135 + (GGA)n Simple_repeat Simple_repeat 2 27 0 3 1340 819 146 0 0 chr11 99020722 99020845 -22823011 + B2_Mm2 SINE B2 3 125 -70 3 1340 906 10 0 0 chr11 99020878 99020981 -22822875 + (GAA)n Simple_repeat Simple_repeat 1 103 0 4 1340 288 0 0 0 chr11 99020981 99021013 -22822843 + (CAG)n Simple_repeat Simple_repeat 1 32 0 4 1340 256 229 69 28 chr11 99021013 99021085 -22822771 + PB1D7 SINE Alu 45 119 -1 4 1340 213 39 0 0 chr11 99021247 99021273 -22822583 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1340 1209 50 0 0 chr11 99021273 99021413 -22822443 - B1_Mus2 SINE Alu -7 140 1 4 1340 711 134 0 18 chr11 99022798 99022912 -22820944 + MTC LTR MaLR 1 112 -307 4 1340 981 169 81 11 chr11 99023324 99023510 -22820346 + MTC LTR MaLR 186 384 -37 4 1340 1140 75 0 33 chr11 99023511 99023528 -22820328 - B1_Mus2 SINE Alu 0 147 135 4 1340 189 74 0 0 chr11 99023528 99023555 -22820301 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 4 1340 1140 75 0 33 chr11 99023555 99023689 -22820167 - B1_Mus2 SINE Alu -13 134 1 4 1340 1111 263 9 100 chr11 99024023 99024373 -22819483 - MTE2b LTR MaLR 0 379 62 4 1340 859 214 49 35 chr11 99025495 99025698 -22818158 + B3 SINE B2 1 206 -10 4 1340 411 265 74 74 chr11 99026191 99026369 -22817487 - MIRb SINE MIR -59 209 37 5 1340 356 339 102 34 chr11 99026422 99026599 -22817257 - MLT1N2 LTR MaLR -291 271 83 5 1340 248 345 88 35 chr11 99027235 99027349 -22816507 + PB1 SINE Alu 7 126 -1 5 1340 252 321 13 13 chr11 99027357 99027436 -22816420 + ID2 SINE ID 4 82 -1 5 1340 426 53 0 0 chr11 99027855 99027912 -22815944 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1340 423 291 12 0 chr11 99027968 99028054 -22815802 + B3 SINE B2 81 167 -49 5 1340 939 245 38 121 chr11 99028063 99028435 -22815421 + MTEa LTR MaLR 36 376 -3 5 1340 198 0 0 0 chr11 99028886 99028908 -22814948 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1340 574 220 143 8 chr11 99028916 99029049 -22814807 - RSINE1 SINE B4 -12 153 3 5 1340 283 267 87 28 chr11 99029055 99029181 -22814675 + MIRb SINE MIR 35 162 -114 5 1340 504 81 0 0 chr11 99030188 99030262 -22813594 + (TATG)n Simple_repeat Simple_repeat 1 74 0 6 1340 560 343 94 28 chr11 99030455 99030773 -22813083 + L1ME4a LINE L1 5505 5843 -281 6 1340 893 115 14 21 chr11 99030783 99030925 -22812931 - B1_Mur4 SINE Alu -1 149 9 6 1340 576 258 54 21 chr11 99031014 99031200 -22812656 + B3A SINE B2 4 195 -3 6 1340 32 91 0 0 chr11 99031200 99031288 -22812568 + AT_rich Low_complexity Low_complexity 1 88 0 6 1340 336 206 0 88 chr11 99031667 99031747 -22812109 + B1F SINE Alu 51 123 -26 6 1340 353 320 43 43 chr11 99031781 99031944 -22811912 - MER3 DNA MER1_type -28 181 19 6 1340 218 323 82 10 chr11 99032874 99032971 -22810885 + MIR SINE MIR 1 104 -158 6 1340 890 120 0 43 chr11 99033026 99033165 -22810691 - B1_Mur4 SINE Alu -1 149 17 6 1340 447 306 73 0 chr11 99033165 99033289 -22810567 - ID_B1 SINE B4 -11 213 81 6 1340 995 147 38 33 chr11 99033470 99033653 -22810203 - B2_Mm2 SINE B2 -10 185 2 7 1340 211 265 0 0 chr11 99033655 99033704 -22810152 + MER5B DNA MER1_type 116 164 -14 7 1340 218 264 0 0 chr11 99034043 99034115 -22809741 + T-rich Low_complexity Low_complexity 1 72 0 7 1340 4716 127 57 4 chr11 99034139 99034845 -22809011 - Lx4A LINE L1 0 7058 6316 7 1340 198 0 0 0 chr11 99034854 99034876 -22808980 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1340 1189 55 14 0 chr11 99034876 99035021 -22808835 - B1_Mm SINE Alu 0 147 1 7 1340 503 214 68 0 chr11 99035244 99035347 -22808509 + ID_B1 SINE B4 86 195 -29 7 1340 395 22 0 0 chr11 99035347 99035393 -22808463 - MTB LTR MaLR 0 400 355 7 1340 9217 32 5 17 chr11 99035395 99036441 -22807415 + MTA_Mm-int LTR MaLR 1 1042 -56 7 1340 1591 47 0 15 chr11 99036441 99036637 -22807219 + B2_Mm1a SINE B2 1 193 0 7 1340 9217 32 5 17 chr11 99036637 99036701 -22807155 + MTA_Mm-int LTR MaLR 1043 1098 0 7 1340 3494 20 13 0 chr11 99036701 99037092 -22806764 + MTA_Mm LTR MaLR 1 396 0 7 1340 249 125 61 30 chr11 99037111 99037177 -22806679 + (CAAA)n Simple_repeat Simple_repeat 3 70 0 8 1340 228 303 25 0 chr11 99037727 99037801 -22806055 + L2c LINE L2 3275 3338 -49 8 1340 303 49 0 0 chr11 99037807 99037848 -22806008 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 8 1340 707 32 11 0 chr11 99037851 99037945 -22805911 + (GA)n Simple_repeat Simple_repeat 2 96 0 8 1340 261 0 0 0 chr11 99038432 99038461 -22805395 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1340 358 312 21 42 chr11 99039064 99039208 -22804648 - B1F1 SINE Alu -6 143 3 8 1340 202 371 51 11 chr11 99039270 99039376 -22804480 - MIR SINE MIR -126 150 34 8 1340 228 35 0 0 chr11 99039452 99039481 -22804375 + (C)n Simple_repeat Simple_repeat 1 29 0 8 1340 792 94 0 0 chr11 99040088 99040194 -22803662 - B2_Mm2 SINE B2 -88 107 2 8 1340 520 304 75 50 chr11 99040197 99040398 -22803458 - B3 SINE B2 -4 212 7 8 1340 450 319 59 35 chr11 99040388 99040557 -22803299 - MLT1B LTR MaLR -215 175 3 9 1340 319 224 0 0 chr11 99040759 99040826 -22803030 - L1ME4a LINE L1 -274 5850 5784 9 1340 332 202 24 97 chr11 99040970 99041137 -22802719 - ORR1D1 LTR MaLR 0 370 146 9 1340 769 147 11 28 chr11 99041137 99041319 -22802537 + GA-rich Low_complexity Low_complexity 2 180 0 9 1340 1058 170 0 21 chr11 99041322 99041508 -22802348 - ORR1D1 LTR MaLR -192 182 1 9 1340 892 275 23 47 chr11 99041805 99042061 -22801795 - B4 SINE B4 -8 284 35 9 1340 965 254 67 55 chr11 99042245 99042585 -22801271 + MTEa LTR MaLR 17 372 -7 9 1340 390 324 111 33 chr11 99042866 99043019 -22800837 + RSINE1 SINE B4 1 165 0 9 1340 935 117 7 49 chr11 99043210 99043354 -22800502 + B1_Mur1 SINE Alu 12 149 0 9 1340 569 72 12 0 chr11 99043373 99043456 -22800400 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 9 1340 609 262 0 84 chr11 99043479 99043658 -22800198 - RSINE1 SINE B4 0 165 2 9 1340 1206 245 28 103 chr11 99044824 99045066 -22798790 + ORR1B1 LTR MaLR 2 219 -175 1 1340 2850 166 78 24 chr11 99045066 99045604 -22798252 + RMER2 LTR ERV1 1 567 0 1 1340 1206 245 28 103 chr11 99045604 99045748 -22798108 + ORR1B1 LTR MaLR 220 359 -35 1 1340 232 269 147 15 chr11 99045858 99045926 -22797930 - ID4_ SINE ID 0 83 7 1 1340 1930 205 86 84 chr11 99045968 99046490 -22797366 + RLTR11A LTR ERVK 1 523 -5 1 1340 438 154 0 0 chr11 99046548 99046626 -22797230 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 1 1340 2353 29 49 64 chr11 99046631 99046960 -22796896 - ORR1A0 LTR MaLR 0 346 23 1 1340 824 165 6 0 chr11 99046966 99047124 -22796732 + (TCCA)n Simple_repeat Simple_repeat 1 159 0 1 1340 969 151 7 0 chr11 99047959 99048105 -22795751 - B1_Mus1 SINE Alu 0 148 2 1 1340 189 0 0 0 chr11 99048112 99048133 -22795723 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1340 650 197 34 34 chr11 99051001 99051148 -22792708 - B1F SINE Alu -2 147 1 1 1340 244 250 130 61 chr11 99051335 99051450 -22792406 - MER34A LTR ERV1 -26 545 423 1 1340 297 0 0 0 chr11 99052013 99052046 -22791810 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1340 668 237 97 126 chr11 99052368 99052927 -22790929 + RLTR19-int LTR ERVK 2664 3021 -3116 1 1340 258 105 0 0 chr11 99053035 99053073 -22790783 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1340 1101 80 0 0 chr11 99053077 99053215 -22790641 - B1_Mus2 SINE Alu -7 140 3 1 1340 1150 93 0 60 chr11 99053250 99053433 -22790423 - L1_Mus2 LINE L1 0 6566 6395 1 1340 4249 157 61 75 chr11 99053433 99053881 -22789975 - RMER19B LTR ERVK -35 867 410 1 1340 3187 20 0 3 chr11 99053881 99054236 -22789620 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1340 4249 157 61 75 chr11 99054236 99054666 -22789190 - RMER19B LTR ERVK -493 409 2 1 1340 1483 238 115 56 chr11 99054767 99055030 -22788826 + RLTR19-int LTR ERVK 3449 3721 -2416 1 1340 181 0 33 33 chr11 99055030 99055060 -22788796 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1340 1483 238 115 56 chr11 99055060 99055420 -22788436 + RLTR19-int LTR ERVK 3722 4108 -2029 1 1340 477 274 60 27 chr11 99055439 99055589 -22788267 + RLTR19-int LTR ERVK 4226 4380 -1757 1 1340 2459 152 93 45 chr11 99055806 99056311 -22787545 + RLTR24 LTR ERV1 1 529 0 1 1340 1143 42 134 35 chr11 99056414 99056586 -22787270 - B2_Mm2 SINE B2 -6 189 1 1 1340 1773 140 44 38 chr11 99057337 99057678 -22786178 - ORR1B2 LTR MaLR -8 359 17 1 1340 765 67 0 0 chr11 99057691 99057795 -22786061 - B1_Mus2 SINE Alu -1 146 43 1 1340 269 159 99 28 chr11 99057733 99057804 -22786052 - RLTR25B LTR ERVK -519 509 434 1 1340 278 327 92 13 chr11 99058013 99058165 -22785691 + RMER15 LTR ERVL 405 568 -7 1 1340 488 198 100 36 chr11 99058283 99058393 -22785463 - PB1D9 SINE Alu -1 119 3 1 1340 306 316 16 73 chr11 99058395 99058518 -22785338 - RSINE1 SINE B4 -46 119 4 1 1340 532 248 44 0 chr11 99058529 99058666 -22785190 - ID_B1 SINE B4 0 224 82 1 1340 1047 243 129 29 chr11 99059168 99059549 -22784307 - MTD LTR MaLR 0 419 1 1 1340 799 154 0 7 chr11 99059678 99059815 -22784041 + B1_Mus2 SINE Alu 12 147 0 1 1340 1102 186 244 59 chr11 99060233 99060564 -22783292 - RMER4A LTR ERVK 0 466 63 1 1340 1159 48 14 0 chr11 99060564 99060709 -22783147 + B1_Mus1 SINE Alu 2 148 0 1 1340 1102 204 51 54 chr11 99060709 99060774 -22783082 - RMER4A LTR ERVK -404 62 9 1 1340 450 262 0 0 chr11 99061139 99061246 -22782610 - PB1D10 SINE Alu 0 117 11 1 1340 708 256 57 78 chr11 99061797 99062093 -22781763 + B4A SINE B4 2 291 -1 1 1340 1144 226 50 33 chr11 99062722 99063024 -22780832 - MTEb LTR MaLR -38 341 35 1 1340 189 0 0 0 chr11 99063081 99063102 -22780754 + (CGGGG)n Simple_repeat Simple_repeat 4 24 0 1 1340 675 38 15 12 chr11 99063154 99063267 -22780589 - B1_Mm SINE Alu 0 120 1 1 1340 759 219 0 20 chr11 99063267 99063413 -22780443 - ID_B1 SINE B4 -33 191 49 1 1340 259 255 53 11 chr11 99063414 99063446 -22780410 - BC1_Mm scRNA scRNA -53 99 68 1 1340 1268 27 0 0 chr11 99063446 99063594 -22780262 - B1_Mus1 SINE Alu 0 148 1 1 1340 259 255 53 11 chr11 99063594 99063656 -22780200 - BC1_Mm scRNA scRNA -85 67 2 1 1340 246 200 104 26 chr11 99063951 99063964 -22779892 + B1F SINE Alu 13 94 -54 1 1340 268 191 32 0 chr11 99063964 99064027 -22779829 + ID_B1 SINE B4 108 172 -52 1 1340 1332 53 0 0 chr11 99064038 99064207 -22779649 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1340 229 230 0 26 chr11 99064232 99064308 -22779548 + GA-rich Low_complexity Low_complexity 3 76 0 1 1340 812 197 0 0 chr11 99064402 99064544 -22779312 + B1_Mur4 SINE Alu 9 150 0 1 1340 943 157 10 56 chr11 99064624 99064820 -22779036 + B2_Mm2 SINE B2 1 187 -8 1 1340 861 234 7 21 chr11 99065549 99065774 -22778082 + B3A SINE B2 1 215 -1 1 1340 384 247 0 0 chr11 99065984 99066065 -22777791 + B4A SINE B4 7 87 -205 1 1340 417 20 0 0 chr11 99066084 99066134 -22777722 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 1 1340 758 121 0 25 chr11 99066135 99066254 -22777602 - B1_Mur3 SINE Alu -13 136 21 1 1340 1351 66 38 16 chr11 99066264 99066449 -22777407 - B2_Mm2 SINE B2 -5 190 2 1 1340 369 286 22 106 chr11 99066449 99066499 -22777357 - ID_B1 SINE B4 -132 92 47 1 1340 277 149 224 0 chr11 99066483 99066550 -22777306 + B4A SINE B4 143 224 -68 1 1340 1638 56 0 0 chr11 99066550 99066763 -22777093 + L1Md_F2 LINE L1 6370 6582 0 1 1340 561 293 113 26 chr11 99066913 99067292 -22776564 + L1MCa LINE L1 1337 1748 -4760 1 1340 237 108 0 0 chr11 99067769 99067806 -22776050 + (G)n Simple_repeat Simple_repeat 1 37 0 1 1340 355 170 82 31 chr11 99068112 99068209 -22775647 + PB1D9 SINE Alu 18 119 -1 1 1340 464 176 0 0 chr11 99068512 99068603 -22775253 - B3 SINE B2 -4 212 122 1 1340 267 167 0 0 chr11 99069953 99070001 -22773855 + B1_Mus2 SINE Alu 99 146 -1 1 1340 483 152 0 0 chr11 99071840 99071919 -22771937 + B3 SINE B2 1 79 -137 1 1340 1369 36 10 0 chr11 99071911 99072103 -22771753 - MT-int LTR MaLR -66 1032 839 1 1340 265 136 23 0 chr11 99072094 99072138 -22771718 + B3A SINE B2 79 123 -75 1 1340 26 0 0 0 chr11 99072188 99072214 -22771642 + AT_rich Low_complexity Low_complexity 1 26 0 1 1340 231 204 19 0 chr11 99072217 99072271 -22771585 + Charlie5 DNA MER1_type 2388 2442 -182 1 1340 725 240 92 1 chr11 99072281 99072496 -22771360 - B4 SINE B4 -8 284 55 1 1340 1532 43 27 0 chr11 99072602 99072789 -22771067 + B2_Mm1t SINE B2 2 193 0 1 1340 284 225 53 84 chr11 99072802 99072933 -22770923 + PB1 SINE Alu 1 127 0 1 1340 216 282 0 0 chr11 99073790 99073868 -22769988 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 1 1340 549 176 184 0 chr11 99074931 99075056 -22768800 - B1_Mur2 SINE Alu 0 149 2 1 1340 765 233 38 32 chr11 99075558 99075744 -22768112 - B3A SINE B2 -10 188 2 1 1340 947 118 99 3 chr11 99076047 99076364 -22767492 + BGLII_Mus LTR ERVK 2 421 0 1 1340 1174 174 4 35 chr11 99076802 99077029 -22766827 + URR1A DNA MER1_type 1 220 -6 1 1340 1170 68 0 0 chr11 99077044 99077191 -22766665 + B1_Mus1 SINE Alu 2 148 0 1 1340 222 171 0 0 chr11 99077192 99077233 -22766623 + A-rich Low_complexity Low_complexity 1 41 0 1 1340 324 250 13 38 chr11 99077591 99077670 -22766186 + B4A SINE B4 24 100 -192 1 1340 294 125 0 0 chr11 99077871 99077919 -22765937 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1340 718 302 41 16 chr11 99078102 99078348 -22765508 - B4A SINE B4 -8 284 33 1 1340 351 271 18 83 chr11 99078356 99078512 -22765344 - PB1D7 SINE Alu -5 144 2 1 1340 833 134 0 0 chr11 99078744 99078871 -22764985 - B2_Mm2 SINE B2 -66 129 3 1 1340 2829 115 25 27 chr11 99079191 99079546 -22764310 + ORR1A3-int LTR MaLR 79 434 -1529 1 1340 463 78 39 0 chr11 99079546 99079623 -22764233 + L1Md_F2 LINE L1 6503 6582 0 1 1340 2829 115 25 27 chr11 99079623 99079750 -22764106 + ORR1A3-int LTR MaLR 435 560 -1403 1 1340 393 202 29 78 chr11 99079743 99079845 -22764011 + MT2B2 LTR ERVL 157 253 -331 1 1340 1206 55 97 22 chr11 99079837 99080022 -22763834 + MTB_Mm LTR MaLR 209 407 0 1 1340 1220 42 0 0 chr11 99080033 99080177 -22763679 + B1_Mus2 SINE Alu 3 146 -1 1 1340 274 215 122 37 chr11 99080201 99080283 -22763573 + PB1D10 SINE Alu 28 116 -1 1 1340 246 254 47 16 chr11 99081461 99081525 -22762331 - ID4 SINE ID -13 70 5 1 1340 186 43 0 0 chr11 99081527 99081550 -22762306 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1340 943 39 54 0 chr11 99081551 99081680 -22762176 - B1_Mus1 SINE Alu 0 148 13 1 1340 21 0 0 0 chr11 99082305 99082326 -22761530 + AT_rich Low_complexity Low_complexity 1 21 0 1 1340 24 0 0 0 chr11 99082593 99082617 -22761239 + AT_rich Low_complexity Low_complexity 1 24 0 1 1340 252 143 0 0 chr11 99083494 99083536 -22760320 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1340 22 35 0 0 chr11 99088030 99088059 -22755797 + AT_rich Low_complexity Low_complexity 1 29 0 1 1340 520 192 21 24 chr11 99088633 99088759 -22755097 + PB1D10 SINE Alu 17 140 -9 1 1340 243 183 183 0 chr11 99089144 99089204 -22754652 - ID4 SINE ID -11 72 2 1 1340 225 132 0 0 chr11 99089864 99089902 -22753954 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1341 324 306 60 0 chr11 99091112 99091246 -22752610 - MIRb SINE MIR -71 197 56 1 1341 1205 55 0 0 chr11 99093551 99093697 -22750159 - B1_Mus2 SINE Alu 0 147 2 1 1341 333 47 0 0 chr11 99093773 99093816 -22750040 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1341 385 278 31 10 chr11 99093816 99093914 -22749942 - PB1D10 SINE Alu -17 100 1 1 1341 908 95 24 10 chr11 99094998 99095174 -22748682 + B2_Mm2 SINE B2 1 189 -4 1 1341 234 105 0 0 chr11 99095480 99095518 -22748338 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1341 189 0 0 0 chr11 99096022 99096043 -22747813 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1341 353 252 91 25 chr11 99096604 99096803 -22747053 + RLTR21 LTR ERVK 1097 1308 -264 2 1341 255 79 0 0 chr11 99096810 99096848 -22747008 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 2 1341 412 247 0 0 chr11 99096857 99096938 -22746918 - B3 SINE B2 -34 182 102 2 1341 624 186 0 33 chr11 99097099 99097221 -22746635 - B1_Mur4 SINE Alu -5 145 28 2 1341 661 240 47 0 chr11 99098555 99098726 -22745130 - MIR SINE MIR -28 234 56 2 1341 1244 48 0 0 chr11 99098748 99098895 -22744961 - B1_Mus1 SINE Alu 0 148 2 2 1341 892 213 31 50 chr11 99099206 99099428 -22744428 - ID_B1 SINE B4 0 224 7 2 1341 387 0 0 0 chr11 99099707 99099750 -22744106 + (TGG)n Simple_repeat Simple_repeat 3 45 0 2 1341 494 238 5 201 chr11 99100523 99100707 -22743149 - B1F SINE Alu -1 148 1 2 1341 37 52 0 0 chr11 99100713 99100771 -22743085 + AT_rich Low_complexity Low_complexity 1 58 0 2 1341 246 310 0 12 chr11 99100787 99100872 -22742984 + PB1D10 SINE Alu 23 106 -11 2 1341 398 267 0 0 chr11 99100888 99100963 -22742893 + ID2 SINE ID 1 75 -8 2 1341 563 239 9 0 chr11 99101169 99101282 -22742574 + RSINE1 SINE B4 23 136 -29 2 1341 540 42 0 0 chr11 99101288 99101359 -22742497 + (CCAA)n Simple_repeat Simple_repeat 2 72 0 2 1341 351 0 0 0 chr11 99101636 99101675 -22742181 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1341 638 66 0 11 chr11 99102079 99102171 -22741685 + B2_Mm2 SINE B2 2 92 -103 2 1341 189 0 0 0 chr11 99102540 99102561 -22741295 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1341 1211 14 7 0 chr11 99102572 99102712 -22741144 - B1_Mus2 SINE Alu -6 141 1 2 1341 246 143 0 0 chr11 99102824 99102873 -22740983 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1341 487 240 35 85 chr11 99102890 99103192 -22740664 - B4 SINE B4 0 292 63 2 1341 496 272 75 110 chr11 99103290 99103643 -22740213 + MLT1H1 LTR MaLR 16 358 -197 2 1341 23 0 0 0 chr11 99103941 99103964 -22739892 + AT_rich Low_complexity Low_complexity 1 23 0 2 1341 369 0 0 0 chr11 99104906 99104947 -22738909 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1341 322 247 112 0 chr11 99105699 99105788 -22738068 + PB1D10 SINE Alu 1 99 -18 2 1341 1466 65 16 0 chr11 99105904 99106090 -22737766 + B2_Mm2 SINE B2 1 189 -6 2 1341 201 224 20 0 chr11 99106801 99106850 -22737006 - MIRc SINE MIR -127 141 92 2 1341 213 39 0 0 chr11 99107009 99107035 -22736821 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2 1341 420 20 0 0 chr11 99107081 99107130 -22736726 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1341 550 261 8 0 chr11 99107140 99107274 -22736582 - RSINE1 SINE B4 -28 137 3 2 1341 548 273 56 39 chr11 99107353 99107532 -22736324 - B3A SINE B2 -16 182 1 2 1341 408 244 165 67 chr11 99107703 99107927 -22735929 - Charlie5 DNA MER1_type -15 2609 2364 2 1341 242 286 24 0 chr11 99107966 99108050 -22735806 + B4A SINE B4 1 86 -206 2 1341 967 200 77 32 chr11 99108050 99108298 -22735558 + Lx5 LINE L1 6784 7042 -8 2 1341 679 312 15 5 chr11 99108298 99108501 -22735355 + B4A SINE B4 82 286 -6 2 1341 333 222 14 14 chr11 99108569 99108642 -22735214 + ID4 SINE ID 2 74 -9 2 1341 1165 69 7 0 chr11 99108907 99109052 -22734804 - B1_Mus2 SINE Alu -1 146 1 2 1341 264 237 21 31 chr11 99109464 99109560 -22734296 + L1MA9 LINE L1 5978 6072 -240 2 1341 228 67 0 0 chr11 99109567 99109597 -22734259 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 1341 685 185 0 49 chr11 99109602 99109744 -22734112 - B1_Mur3 SINE Alu -11 138 4 2 1341 1084 122 42 42 chr11 99110049 99110238 -22733618 + B2_Mm2 SINE B2 1 189 -6 2 1341 1076 129 50 6 chr11 99110307 99110486 -22733370 - B2_Mm2 SINE B2 -6 189 3 2 1341 460 154 94 19 chr11 99110518 99110624 -22733232 - B3 SINE B2 0 216 103 2 1341 662 285 50 43 chr11 99110883 99111162 -22732694 - Lx8 LINE L1 -349 7124 6844 2 1341 575 213 218 28 chr11 99111190 99111369 -22732487 - ID_B1 SINE B4 -9 215 3 2 1341 240 86 0 0 chr11 99112453 99112488 -22731368 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1341 1330 101 22 0 chr11 99112488 99112667 -22731189 - B2_Mm2 SINE B2 -12 183 1 2 1341 1351 72 6 6 chr11 99112818 99113000 -22730856 - B2_Mm2 SINE B2 0 195 14 2 1341 870 71 53 6 chr11 99113063 99113233 -22730623 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 2 1341 312 169 38 8 chr11 99113244 99113375 -22730481 + (TCTA)n Simple_repeat Simple_repeat 3 137 0 2 1341 234 0 0 0 chr11 99113403 99113429 -22730427 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1341 216 97 0 0 chr11 99113429 99113460 -22730396 + (CAT)n Simple_repeat Simple_repeat 1 31 0 2 1341 772 239 0 19 chr11 99113497 99113655 -22730201 - RSINE1 SINE B4 -6 159 5 2 1341 236 278 42 0 chr11 99114673 99114745 -22729111 + RLTR12B LTR ERVK 106 180 -348 2 1341 228 247 43 53 chr11 99114868 99114962 -22728894 + RLTR11A2 LTR ERVK 419 511 -16 2 1341 1037 128 11 58 chr11 99115331 99115521 -22728335 + B2_Mm2 SINE B2 1 181 -14 2 1341 458 70 0 14 chr11 99115523 99115595 -22728261 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1341 959 250 8 86 chr11 99115602 99115869 -22727987 - B4A SINE B4 -4 288 43 2 1341 226 209 43 43 chr11 99116159 99116229 -22727627 + MER67C LTR ERV1 4 73 -638 2 1341 608 194 0 7 chr11 99116246 99116391 -22727465 + (CA)n Simple_repeat Simple_repeat 1 144 0 2 1341 461 209 26 35 chr11 99116420 99116534 -22727322 + PB1D10 SINE Alu 5 117 0 2 1341 317 237 104 59 chr11 99116649 99116800 -22727056 + B4A SINE B4 3 250 -42 2 1341 874 114 69 0 chr11 99116953 99116972 -22726884 - B1_Mur4 SINE Alu -1 149 131 2 1341 342 0 0 0 chr11 99116972 99117010 -22726846 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1341 874 114 69 0 chr11 99117010 99117121 -22726735 - B1_Mur4 SINE Alu -20 130 11 2 1341 1229 286 142 21 chr11 99117131 99117566 -22726290 + MER67C LTR ERV1 198 685 -26 2 1341 341 229 103 10 chr11 99117654 99117751 -22726105 - B3 SINE B2 -1 215 110 2 1341 231 146 0 0 chr11 99117801 99117842 -22726014 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 1341 1053 106 29 37 chr11 99117845 99118053 -22725803 - B2_Mm2 SINE B2 0 216 4 2 1341 431 220 99 0 chr11 99118056 99118147 -22725709 - RSINE1 SINE B4 -62 103 4 2 1341 33 25 0 0 chr11 99118155 99118195 -22725661 + AT_rich Low_complexity Low_complexity 1 40 0 2 1341 233 197 15 0 chr11 99118215 99118281 -22725575 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 2 1341 181 0 0 65 chr11 99118390 99118421 -22725435 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1341 1110 77 21 0 chr11 99118426 99118569 -22725287 - B1_Mus2 SINE Alu 0 147 2 2 1341 409 306 6 89 chr11 99118576 99118734 -22725122 - ID_B1 SINE B4 -1 223 79 2 1341 351 0 0 0 chr11 99118859 99118898 -22724958 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1341 1455 39 0 0 chr11 99119663 99119841 -22724015 + (TTC)n Simple_repeat Simple_repeat 3 180 0 2 1341 381 188 0 0 chr11 99119842 99119927 -22723929 + CT-rich Low_complexity Low_complexity 4 88 0 2 1341 384 323 24 8 chr11 99119983 99120108 -22723748 - RSINE1 SINE B4 -38 127 1 2 1341 1119 249 82 9 chr11 99121178 99121519 -22722337 - ORR1D2 LTR MaLR -4 366 1 2 1341 262 289 81 63 chr11 99121554 99121665 -22722191 - PB1D10 SINE Alu -4 113 1 2 1341 678 93 0 0 chr11 99121757 99121865 -22721991 + (TG)n Simple_repeat Simple_repeat 1 108 0 2 1341 763 209 0 0 chr11 99121865 99121994 -22721862 - RSINE1 SINE B4 -34 131 3 2 1341 569 158 268 45 chr11 99122590 99122769 -22721087 + ID_B1 SINE B4 2 220 -4 2 1341 644 56 11 0 chr11 99122776 99122865 -22720991 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1341 1038 107 8 1 chr11 99122909 99123686 -22720170 + (CA)n Simple_repeat Simple_repeat 1 782 0 2 1341 1123 234 141 32 chr11 99123875 99124251 -22719605 - MTD LTR MaLR -2 417 1 2 1341 226 286 15 60 chr11 99125102 99125169 -22718687 + MER20 DNA MER1_type 42 105 -114 2 1341 781 226 0 48 chr11 99126059 99126226 -22717630 + RSINE1 SINE B4 3 161 -4 2 1341 1153 195 9 14 chr11 99126286 99126499 -22717357 + B3 SINE B2 4 215 -1 2 1341 22 0 0 0 chr11 99126830 99126852 -22717004 + AT_rich Low_complexity Low_complexity 1 22 0 2 1341 548 244 8 32 chr11 99126974 99127097 -22716759 - ID_B1 SINE B4 -8 216 97 2 1341 297 361 27 27 chr11 99127097 99127114 -22716742 - B1_Mur4 SINE Alu 0 110 3 2 1341 395 228 5 54 chr11 99127467 99127583 -22716273 - PB1D10 SINE Alu -6 111 6 2 1341 288 235 0 4 chr11 99127588 99127645 -22716211 - B1F1 SINE Alu -88 60 6 2 1341 286 233 0 62 chr11 99127651 99127715 -22716141 - B1F1 SINE Alu -88 60 1 2 1341 240 111 0 0 chr11 99128196 99128232 -22715624 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 1341 1015 95 13 20 chr11 99128235 99128385 -22715471 - B1_Mur4 SINE Alu -1 149 1 2 1341 503 195 88 99 chr11 99128385 99128418 -22715438 - B4A SINE B4 -217 75 45 2 1341 633 246 0 40 chr11 99128773 99128921 -22714935 + ID_B1 SINE B4 82 223 -1 2 1341 213 263 17 17 chr11 99129092 99129150 -22714706 - ID4_ SINE ID -23 60 3 2 1341 668 175 102 8 chr11 99129207 99129334 -22714522 - B1_Mur4 SINE Alu -11 139 1 2 1341 689 225 46 55 chr11 99129417 99129627 -22714229 - B3A SINE B2 -5 211 1 2 1341 207 0 0 0 chr11 99129632 99129655 -22714201 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 2 1341 1393 79 0 6 chr11 99129656 99129835 -22714021 - B2_Mm2 SINE B2 -17 178 1 2 1341 2368 150 41 34 chr11 99129874 99130288 -22713568 - RLTR41 LTR ERV1 -29 417 1 3 1341 880 169 214 0 chr11 99130738 99130916 -22712940 + B3 SINE B2 1 216 0 3 1341 288 0 0 0 chr11 99130919 99130951 -22712905 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1341 319 265 175 49 chr11 99131092 99131235 -22712621 - HAL1-3A_ME LINE L1 -414 2444 2284 3 1341 874 186 3 7 chr11 99131235 99131534 -22712322 + CT-rich Low_complexity Low_complexity 1 297 0 3 1341 1098 206 49 0 chr11 99131819 99132023 -22711833 - B3 SINE B2 -1 215 2 3 1341 1196 68 0 0 chr11 99132061 99132207 -22711649 + B1_Mus2 SINE Alu 2 147 0 3 1341 231 311 0 0 chr11 99132524 99132585 -22711271 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1341 384 259 42 90 chr11 99132585 99132729 -22711127 - ID_B1 SINE B4 0 224 88 3 1341 422 349 78 48 chr11 99132871 99133142 -22710714 + L3 LINE CR1 4208 4486 -3 3 1341 798 153 0 0 chr11 99133349 99133493 -22710363 + CT-rich Low_complexity Low_complexity 1 144 0 3 1341 4063 196 29 121 chr11 99133823 99134605 -22709251 + RMER1A Other Other 45 728 -302 3 1341 3191 36 23 3 chr11 99134605 99134993 -22708863 - MTA_Mm LTR MaLR 0 396 1 3 1341 4063 196 29 121 chr11 99134993 99135296 -22708560 + RMER1A Other Other 729 1030 0 3 1341 714 210 153 11 chr11 99135456 99135639 -22708217 - B3 SINE B2 -6 210 2 3 1341 207 0 0 0 chr11 99135642 99135665 -22708191 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 1341 216 0 0 0 chr11 99136223 99136247 -22707609 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1341 213 250 0 0 chr11 99136359 99136419 -22707437 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1341 260 309 35 23 chr11 99136421 99136507 -22707349 - B4A SINE B4 -2 290 204 3 1341 384 296 10 0 chr11 99136887 99136985 -22706871 + ID_B1 SINE B4 124 222 -2 3 1341 384 262 47 47 chr11 99137190 99137318 -22706538 - MLT1A0 LTR MaLR -237 128 1 3 1341 240 233 65 65 chr11 99137582 99137674 -22706182 + B3A SINE B2 95 186 -12 3 1341 664 206 170 0 chr11 99137879 99138018 -22705838 + B2_Mm2 SINE B2 1 165 -30 3 1341 387 0 0 0 chr11 99138018 99138061 -22705795 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1341 664 206 170 0 chr11 99138061 99138086 -22705770 + B2_Mm2 SINE B2 166 192 -3 3 1341 22 0 0 0 chr11 99139197 99139219 -22704637 + AT_rich Low_complexity Low_complexity 1 22 0 3 1341 598 239 106 31 chr11 99139242 99139438 -22704418 - B3A SINE B2 -13 203 3 3 1341 730 243 28 47 chr11 99139612 99139803 -22704053 - B4 SINE B4 -82 210 6 3 1341 1176 64 0 0 chr11 99140422 99140562 -22703294 - B1_Mus1 SINE Alu -8 140 1 3 1341 550 205 134 0 chr11 99140562 99140689 -22703167 - B1F2 SINE Alu -5 144 1 3 1341 309 339 126 0 chr11 99140765 99140781 -22703075 - ID_B1 SINE B4 0 224 82 3 1341 433 288 126 0 chr11 99140781 99140892 -22702964 - B1F SINE Alu -24 125 1 3 1341 755 256 67 97 chr11 99141729 99141803 -22702053 - B4 SINE B4 -1 291 222 3 1341 726 96 0 0 chr11 99141803 99141907 -22701949 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 3 1341 755 256 67 97 chr11 99141907 99142039 -22701817 - B4 SINE B4 -71 221 85 3 1341 252 86 0 0 chr11 99142039 99142074 -22701782 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 3 1341 755 256 67 97 chr11 99142074 99142165 -22701691 - B4 SINE B4 -208 84 2 3 1341 388 62 0 94 chr11 99142957 99143063 -22700793 + G-rich Low_complexity Low_complexity 1 96 0 3 1341 341 249 77 26 chr11 99143098 99143278 -22700578 - B4A SINE B4 -74 218 2 3 1341 210 305 0 0 chr11 99144429 99144488 -22699368 + CT-rich Low_complexity Low_complexity 4 62 0 3 1341 373 333 62 0 chr11 99144522 99144536 -22699320 + B1F1 SINE Alu 1 137 -12 3 1341 467 287 17 0 chr11 99144536 99144651 -22699205 + ID_B1 SINE B4 96 212 -12 3 1341 384 22 0 0 chr11 99144651 99144696 -22699160 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 3 1341 474 299 27 0 chr11 99145628 99145775 -22698081 + RSINE1 SINE B4 1 151 -14 3 1341 180 125 0 0 chr11 99145786 99145818 -22698038 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1341 308 289 29 76 chr11 99147251 99147356 -22696500 - PB1D10 SINE Alu -9 108 9 3 1341 717 259 7 4 chr11 99147269 99147444 -22696412 - ID_B1 SINE B4 -113 179 2 3 1341 677 200 32 0 chr11 99147885 99148010 -22695846 + RSINE1 SINE B4 1 129 -36 3 1341 486 0 0 0 chr11 99148036 99148090 -22695766 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1341 574 281 44 24 chr11 99148132 99148384 -22695472 + L1MB2 LINE L1 5908 6164 -7 3 1341 1170 148 0 0 chr11 99148575 99148965 -22694891 + (TG)n Simple_repeat Simple_repeat 1 390 0 3 1341 294 247 299 0 chr11 99148978 99149075 -22694781 - B4A SINE B4 -117 175 50 3 1341 471 78 0 0 chr11 99149428 99149492 -22694364 + (TCCC)n Simple_repeat Simple_repeat 4 67 0 3 1341 968 232 74 42 chr11 99149647 99149720 -22694136 - B4A SINE B4 0 292 215 3 1341 306 0 0 0 chr11 99149720 99149754 -22694102 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1341 968 232 74 42 chr11 99149754 99149963 -22693893 - B4A SINE B4 -78 214 1 3 1341 4955 43 9 0 chr11 99150053 99150635 -22693221 + LTRIS_Mus LTR ERV1 1 587 0 3 1341 3394 47 0 0 chr11 99150768 99151176 -22692680 - L1Md_F3 LINE L1 -14 6570 6163 3 1341 207 0 0 0 chr11 99151873 99151896 -22691960 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1341 1114 79 0 0 chr11 99151896 99152036 -22691820 - B1_Mus1 SINE Alu -8 140 1 3 1341 1235 156 29 5 chr11 99152451 99152657 -22691199 + B3 SINE B2 1 211 -5 3 1341 22 0 0 0 chr11 99152819 99152841 -22691015 + AT_rich Low_complexity Low_complexity 1 22 0 3 1341 568 254 198 0 chr11 99152845 99153022 -22690834 - ID_B1 SINE B4 -5 219 8 3 1341 21 0 0 0 chr11 99153149 99153170 -22690686 + AT_rich Low_complexity Low_complexity 1 21 0 3 1341 205 162 0 0 chr11 99153222 99153259 -22690597 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1341 347 273 250 0 chr11 99153261 99153389 -22690467 - RSINE1 SINE B4 0 165 6 3 1341 341 265 67 3 chr11 99153390 99153491 -22690365 - B1F SINE Alu -6 143 37 3 1341 1270 231 172 69 chr11 99153491 99154189 -22689667 - L1M4c LINE L1 -3121 3982 3213 3 1341 740 232 17 26 chr11 99154206 99154399 -22689457 + B3A SINE B2 1 180 -36 3 1341 610 305 83 48 chr11 99154907 99155161 -22688695 - L1M4c LINE L1 -4597 2511 2250 3 1341 405 0 0 0 chr11 99155161 99155206 -22688650 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1341 610 313 83 47 chr11 99155206 99155348 -22688508 - L1M4c LINE L1 -4859 2249 2150 3 1341 213 121 0 0 chr11 99155369 99155402 -22688454 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1341 960 167 0 43 chr11 99155403 99155591 -22688265 - B2_Mm2 SINE B2 -14 181 2 3 1341 202 265 0 20 chr11 99155691 99155741 -22688115 + CT-rich Low_complexity Low_complexity 4 52 0 3 1341 243 61 0 0 chr11 99155763 99155796 -22688060 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1341 401 314 70 35 chr11 99155799 99155941 -22687915 - RSINE1 SINE B4 -9 156 10 3 1341 369 102 0 0 chr11 99155956 99156015 -22687841 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1341 381 278 59 15 chr11 99156047 99156182 -22687674 - B1F2 SINE Alu -5 144 4 3 1341 326 250 50 124 chr11 99156503 99156645 -22687211 - L1M4c LINE L1 -5035 1995 1852 3 1341 1353 136 22 22 chr11 99156645 99156871 -22686985 + URR1A DNA MER1_type 1 226 0 3 1341 326 250 50 124 chr11 99156871 99156929 -22686927 - L1M4c LINE L1 -5179 1851 1810 3 1341 490 207 0 11 chr11 99157225 99157313 -22686543 - RMER1C Other Other -252 1090 1004 3 1341 303 89 0 0 chr11 99157319 99157331 -22686525 + (TC)n Simple_repeat Simple_repeat 1 12 0 3 1341 710 78 0 10 chr11 99157331 99157434 -22686422 + (TTTCC)n Simple_repeat Simple_repeat 4 105 0 3 1341 303 89 0 0 chr11 99157434 99157466 -22686390 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1341 766 211 18 66 chr11 99157469 99157688 -22686168 - RMER1C Other Other -353 989 818 3 1341 2726 192 127 18 chr11 99157839 99157887 -22685969 + Lx6 LINE L1 6812 6859 -601 3 1341 1933 129 188 35 chr11 99157887 99158287 -22685569 - RMER6B LTR ERVK 0 461 1 3 1341 2726 192 127 18 chr11 99158287 99158799 -22685057 + Lx6 LINE L1 6860 7433 -27 3 1341 1158 138 26 11 chr11 99158800 99158990 -22684866 + B2_Mm2 SINE B2 2 194 -1 3 1341 294 260 0 52 chr11 99159014 99159091 -22684765 - RSINE1 SINE B4 -85 80 8 3 1341 527 111 0 0 chr11 99159623 99159690 -22684166 - RLTR15 LTR ERVK -14 345 279 3 1341 2116 101 12 68 chr11 99159690 99160029 -22683827 + ORR1A2 LTR MaLR 1 320 -7 3 1341 611 209 129 0 chr11 99160029 99160192 -22683664 + RMER17C LTR ERVK 1 184 -226 3 1341 390 21 0 0 chr11 99160192 99160239 -22683617 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1341 388 209 133 97 chr11 99160239 99160288 -22683568 + RMER17C LTR ERVK 403 437 -521 3 1341 3868 80 12 17 chr11 99160288 99161245 -22682611 - L1VL4 LINE L1 -2211 1348 401 3 1341 538 302 24 10 chr11 99161328 99161535 -22682321 - L1MA4A LINE L1 -363 5940 5731 3 1341 348 24 0 0 chr11 99161602 99161643 -22682213 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1341 3014 118 77 16 chr11 99161822 99162332 -22681524 - RLTR26 LTR ERVK 0 642 102 3 1341 1106 65 0 21 chr11 99162335 99162477 -22681379 + MERVK26-int LTR ERVK 6277 6415 -504 3 1341 637 144 0 0 chr11 99162483 99162580 -22681276 - RLTR26 LTR ERVK -545 97 1 3 1341 3905 85 28 2 chr11 99162583 99163089 -22680767 - MERVK26-int LTR ERVK -1 6918 6400 3 1341 18319 55 10 7 chr11 99163087 99165325 -22678531 - MERVK26-int LTR ERVK -1273 5646 3402 3 1341 242 235 0 56 chr11 99165471 99165543 -22678313 + RLTR19 LTR ERVK 8 75 -424 3 1341 278 83 0 59 chr11 99165602 99165653 -22678203 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1341 576 219 7 7 chr11 99165662 99165800 -22678056 + RLTR19 LTR ERVK 112 249 -250 3 1341 251 308 148 89 chr11 99165822 99165937 -22677919 + RLTR19 LTR ERVK 221 348 -148 3 1341 3047 47 0 27 chr11 99165937 99166312 -22677544 - RLTR10B2 LTR ERVK 0 365 1 3 1341 392 308 148 89 chr11 99166312 99166453 -22677403 + RLTR19 LTR ERVK 349 495 -4 3 1341 3274 48 179 2 chr11 99166760 99167195 -22676661 - RLTR1B LTR ERV1 0 512 1 3 1341 1176 197 34 97 chr11 99167499 99167881 -22675975 + RMER17C LTR ERVK 53 410 0 3 1341 1123 36 43 0 chr11 99167955 99168095 -22675761 + B1_Mm SINE Alu 2 147 0 3 1341 440 191 138 0 chr11 99168579 99168673 -22675183 - B4A SINE B4 -6 286 180 3 1341 351 0 0 0 chr11 99168729 99168768 -22675088 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1341 484 204 21 0 chr11 99169094 99169187 -22674669 + B3 SINE B2 122 216 0 3 1341 204 304 0 25 chr11 99169225 99169306 -22674550 + T-rich Low_complexity Low_complexity 4 82 0 3 1341 196 53 26 26 chr11 99169322 99169361 -22674495 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1341 780 252 24 24 chr11 99169438 99169649 -22674207 - ID_B1 SINE B4 -6 218 8 4 1341 239 234 178 0 chr11 99169665 99169772 -22674084 - L1M3 LINE L1 -2960 3180 3055 4 1341 432 0 0 0 chr11 99170013 99170061 -22673795 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1341 1296 111 26 0 chr11 99170360 99170550 -22673306 - B2_Mm2 SINE B2 0 195 1 4 1341 31 0 0 0 chr11 99170575 99170606 -22673250 + AT_rich Low_complexity Low_complexity 1 31 0 4 1341 252 0 0 0 chr11 99170622 99170650 -22673206 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1341 248 210 21 129 chr11 99170657 99170750 -22673106 - RSINE1 SINE B4 -80 85 3 4 1341 1439 80 0 11 chr11 99170827 99171017 -22672839 - B2_Mm2 SINE B2 -6 189 2 4 1341 387 0 0 0 chr11 99171122 99171165 -22672691 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1341 397 270 0 0 chr11 99171167 99171256 -22672600 - RSINE1 SINE B4 -63 102 14 4 1341 961 106 28 21 chr11 99171469 99171614 -22672242 - B1_Mus1 SINE Alu -1 147 2 4 1341 893 144 66 16 chr11 99172357 99172540 -22671316 - B2_Mm2 SINE B2 0 195 4 4 1341 597 268 35 30 chr11 99172860 99173154 -22670702 + RLTR18B LTR ERVK 1 284 -332 4 1341 854 284 27 89 chr11 99173212 99173540 -22670316 + RLTR18B LTR ERVK 190 613 -3 4 1341 399 295 116 37 chr11 99173562 99173777 -22670079 - B4A SINE B4 -60 232 1 4 1341 548 106 11 0 chr11 99173838 99173932 -22669924 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 1341 335 282 44 71 chr11 99174037 99174220 -22669636 - RMER17C-int LTR ERVK 0 3238 3061 4 1341 567 193 31 128 chr11 99174219 99174281 -22669575 - RLTR19-int LTR ERVK -2478 3659 3598 4 1341 3363 31 21 0 chr11 99174281 99174669 -22669187 + MTA_Mm LTR MaLR 1 396 0 4 1341 567 193 31 128 chr11 99174669 99174802 -22669054 - RLTR19-int LTR ERVK -2540 3597 3483 4 1341 1036 183 124 0 chr11 99175320 99175506 -22668350 - B3 SINE B2 -7 209 1 4 1341 267 275 0 80 chr11 99175788 99175863 -22667993 - RMER30 DNA MER1_type -1 201 133 4 1341 743 237 71 109 chr11 99176060 99176453 -22667403 + RMER17C LTR ERVK 1 378 -32 4 1341 210 275 0 0 chr11 99176459 99176528 -22667328 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1341 314 356 84 47 chr11 99178187 99178508 -22665348 - MER2 DNA MER2_type -4 341 9 4 1341 775 197 7 26 chr11 99178828 99178979 -22664877 + B1_Mur1 SINE Alu 1 148 -1 4 1341 180 0 0 0 chr11 99178984 99179004 -22664852 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 4 1341 1277 99 0 47 chr11 99179058 99179249 -22664607 + B2_Mm2 SINE B2 2 183 -12 4 1341 216 0 0 0 chr11 99179249 99179273 -22664583 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1341 249 33 0 0 chr11 99180232 99180262 -22663594 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1341 35 0 0 0 chr11 99181152 99181187 -22662669 + AT_rich Low_complexity Low_complexity 1 35 0 4 1341 1018 107 129 6 chr11 99181374 99181544 -22662312 + B2_Mm2 SINE B2 4 194 -1 4 1341 766 280 150 43 chr11 99181563 99182049 -22661807 + Lx8 LINE L1 6934 7471 -2 4 1341 246 62 0 0 chr11 99182757 99182789 -22661067 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 4 1341 243 79 0 0 chr11 99183031 99183069 -22660787 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1341 189 0 0 0 chr11 99183524 99183545 -22660311 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1341 378 0 0 0 chr11 99185090 99185132 -22658724 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1341 559 266 98 5 chr11 99185133 99185348 -22658508 - L1MA8 LINE L1 -53 6238 6004 4 1341 33 90 0 0 chr11 99185481 99185570 -22658286 + AT_rich Low_complexity Low_complexity 1 89 0 4 1341 389 248 80 37 chr11 99185577 99185740 -22658116 - L1MA8 LINE L1 -873 5267 5098 4 1341 723 219 7 9 chr11 99185761 99185946 -22657910 + B3A SINE B2 34 216 0 4 1341 668 267 111 63 chr11 99185981 99186524 -22657332 - L1MA8 LINE L1 -1081 5065 4478 4 1341 517 230 140 87 chr11 99186563 99186792 -22657064 - Lx8 LINE L1 -30 7443 7203 4 1341 555 261 100 11 chr11 99186799 99186989 -22656867 - L1MA8 LINE L1 -1684 4459 4253 4 1341 282 179 0 0 chr11 99187017 99187073 -22656783 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1341 306 73 0 0 chr11 99187128 99187169 -22656687 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1341 1216 50 0 0 chr11 99187169 99187330 -22656526 - B2_Mm2 SINE B2 -34 161 1 4 1341 294 328 39 39 chr11 99187364 99187402 -22656454 - B3A SINE B2 -12 186 7 4 1341 385 273 49 21 chr11 99187402 99187544 -22656312 - RSINE1 SINE B4 -12 153 8 4 1341 648 270 115 0 chr11 99187558 99187758 -22656098 - B4A SINE B4 -64 228 6 4 1341 210 217 0 21 chr11 99187894 99187941 -22655915 + (TTA)n Simple_repeat Simple_repeat 1 46 0 4 1341 682 264 84 72 chr11 99187941 99188178 -22655678 - Lx8 LINE L1 -951 6522 6283 4 1341 392 97 16 0 chr11 99188179 99188241 -22655615 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1341 240 35 0 0 chr11 99188242 99188271 -22655585 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1341 254 293 17 0 chr11 99188281 99188339 -22655517 - Lx8 LINE L1 -1319 6154 6096 4 1341 234 278 0 0 chr11 99188457 99188511 -22655345 + CT-rich Low_complexity Low_complexity 3 56 0 4 1341 364 264 85 8 chr11 99189015 99189145 -22654711 - B1F SINE Alu -5 144 5 4 1341 1524 265 72 22 chr11 99189181 99189625 -22654231 - Lx8 LINE L1 -151 7322 6857 4 1341 558 43 0 0 chr11 99191274 99191343 -22652513 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1341 325 207 23 0 chr11 99191434 99191521 -22652335 + CT-rich Low_complexity Low_complexity 1 89 0 4 1341 468 303 23 8 chr11 99191617 99191750 -22652106 - B1F SINE Alu -9 140 6 4 1341 337 324 19 9 chr11 99191959 99192065 -22651791 + PB1D10 SINE Alu 10 116 -1 4 1341 646 262 169 25 chr11 99192188 99192431 -22651425 + B4 SINE B4 15 292 0 4 1341 609 14 0 0 chr11 99192457 99192527 -22651329 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1341 574 249 133 39 chr11 99192705 99192885 -22650971 - B3A SINE B2 -1 197 1 4 1341 576 218 113 82 chr11 99193320 99193515 -22650341 + Lx6 LINE L1 7218 7418 -42 4 1341 495 0 0 0 chr11 99193523 99193578 -22650278 + (TAA)n Simple_repeat Simple_repeat 2 56 0 4 1341 955 145 79 34 chr11 99193906 99194084 -22649772 - B2_Mm2 SINE B2 -8 187 2 4 1341 313 229 44 15 chr11 99194317 99194416 -22649440 + PB1D10 SINE Alu 12 196 -115 4 1341 285 146 0 0 chr11 99194416 99194464 -22649392 + (CAT)n Simple_repeat Simple_repeat 3 50 0 4 1341 407 106 15 0 chr11 99194566 99194632 -22649224 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1341 991 221 29 10 chr11 99195317 99195523 -22648333 + B3 SINE B2 2 211 -5 4 1341 504 32 0 0 chr11 99196833 99196895 -22646961 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1341 680 243 96 92 chr11 99196901 99197029 -22646827 - B4A SINE B4 -22 270 140 4 1341 788 197 7 0 chr11 99197029 99197176 -22646680 - B1_Mus1 SINE Alu 0 148 1 4 1341 680 243 96 92 chr11 99197176 99197296 -22646560 - B4A SINE B4 -153 139 21 4 1341 1199 219 0 0 chr11 99197492 99197702 -22646154 + B3 SINE B2 2 211 -5 4 1341 323 299 0 0 chr11 99198160 99198237 -22645619 - ID4_ SINE ID -2 81 5 4 1341 365 313 0 9 chr11 99198249 99198365 -22645491 - PB1D10 SINE Alu -2 115 1 4 1341 309 259 35 53 chr11 99198600 99198714 -22645142 - PB1D10 SINE Alu 0 117 6 4 1341 260 253 13 13 chr11 99198649 99198725 -22645131 - B4A SINE B4 -137 155 80 4 1341 669 265 72 43 chr11 99199799 99199814 -22644042 - B4 SINE B4 -8 284 271 4 1341 324 102 0 0 chr11 99199814 99199863 -22643993 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1341 669 265 72 43 chr11 99199863 99200123 -22643733 - B4 SINE B4 -22 270 1 4 1341 1182 54 0 0 chr11 99200151 99200298 -22643558 + B1_Mus2 SINE Alu 1 147 0 4 1341 198 0 0 0 chr11 99200298 99200320 -22643536 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1341 240 333 43 0 chr11 99200454 99200547 -22643309 - PB1D10 SINE Alu -18 99 3 4 1341 195 100 0 0 chr11 99200554 99200584 -22643272 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1341 517 228 8 61 chr11 99200660 99200791 -22643065 - B1F2 SINE Alu -8 141 18 4 1341 1045 177 29 19 chr11 99201904 99202111 -22641745 - B3 SINE B2 -6 210 2 4 1341 248 193 0 17 chr11 99202143 99202201 -22641655 + T-rich Low_complexity Low_complexity 2 58 0 4 1341 614 253 49 61 chr11 99202536 99202700 -22641156 + RSINE1 SINE B4 2 163 -2 4 1341 793 233 0 35 chr11 99202846 99203015 -22640841 - RSINE1 SINE B4 0 165 3 4 1341 523 291 141 0 chr11 99203211 99203410 -22640446 + MIR SINE MIR 14 240 -22 4 1341 1226 299 65 47 chr11 99203615 99204235 -22639621 - L1MC1 LINE L1 -16 6317 5687 4 1341 548 198 107 36 chr11 99204237 99204432 -22639424 - B3 SINE B2 -5 190 1 4 1341 433 180 14 57 chr11 99204439 99204578 -22639278 - L1MC1 LINE L1 -2098 5687 5561 4 1341 676 254 53 5 chr11 99204707 99204913 -22638943 - ID_B1 SINE B4 -8 216 1 4 1341 995 276 29 86 chr11 99205033 99205184 -22638672 + ORR1D2 LTR MaLR 3 148 -222 4 1341 288 0 0 0 chr11 99205184 99205216 -22638640 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1341 995 276 29 86 chr11 99205216 99205261 -22638595 + ORR1D2 LTR MaLR 149 182 -188 4 1341 1312 125 16 0 chr11 99205261 99205453 -22638403 + B2_Mm2 SINE B2 1 195 0 4 1341 995 276 29 86 chr11 99205453 99205639 -22638217 + ORR1D2 LTR MaLR 183 363 -7 4 1341 1341 237 102 22 chr11 99205657 99206019 -22637837 - Lx8 LINE L1 -97 7376 6986 4 1341 504 275 137 24 chr11 99206024 99206236 -22637620 - Lx8 LINE L1 -253 7220 6985 4 1341 338 217 196 142 chr11 99206371 99206575 -22637281 - B3 SINE B2 0 216 2 4 1341 947 48 0 0 chr11 99207267 99207393 -22636463 + B1_Mus2 SINE Alu 21 146 -1 4 1341 944 244 55 55 chr11 99207427 99207717 -22636139 + B4 SINE B4 3 292 0 4 1341 200 163 0 23 chr11 99207723 99207767 -22636089 + GA-rich Low_complexity Low_complexity 3 45 0 4 1341 294 29 0 0 chr11 99207852 99207887 -22635969 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1341 871 264 49 28 chr11 99208389 99208674 -22635182 + B4 SINE B4 1 291 -1 5 1341 952 168 0 0 chr11 99209135 99209284 -22634572 - B1_Mur2 SINE Alu 0 149 1 5 1341 224 260 200 0 chr11 99210491 99210591 -22633265 - PB1D7 SINE Alu 0 120 1 5 1341 942 212 84 5 chr11 99211674 99211864 -22631992 - B3 SINE B2 -10 206 2 5 1341 210 105 0 0 chr11 99212906 99212944 -22630912 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 5 1341 187 152 0 42 chr11 99213258 99213306 -22630550 + CT-rich Low_complexity Low_complexity 3 48 0 5 1341 368 252 10 10 chr11 99213314 99213414 -22630442 - PB1D10 SINE Alu -14 103 4 5 1341 370 283 51 28 chr11 99213727 99213891 -22629965 + MER45R DNA Tip100 1157 1327 -254 5 1341 956 210 15 20 chr11 99213891 99214090 -22629766 + B3A SINE B2 1 198 0 5 1341 370 283 51 28 chr11 99214090 99214103 -22629753 + MER45R DNA Tip100 1328 1338 -243 5 1341 1153 88 0 7 chr11 99214252 99214401 -22629455 + B1_Mus1 SINE Alu 1 148 0 5 1341 583 278 12 12 chr11 99214444 99214608 -22629248 - B4A SINE B4 -41 251 88 5 1341 321 281 12 0 chr11 99214651 99214733 -22629123 + ID_B1 SINE B4 102 184 -40 5 1341 1246 96 84 40 chr11 99214852 99215079 -22628777 + Lx4A LINE L1 6822 7058 0 5 1341 243 170 0 0 chr11 99215175 99215222 -22628634 + (CATA)n Simple_repeat Simple_repeat 2 48 0 5 1341 465 34 0 0 chr11 99215289 99215348 -22628508 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1341 626 194 62 0 chr11 99215348 99215477 -22628379 - B1_Mur1 SINE Alu -10 139 3 5 1341 834 215 75 0 chr11 99215606 99215806 -22628050 + B4 SINE B4 5 219 -73 5 1341 304 150 0 32 chr11 99215815 99215877 -22627979 + B1_Mur4 SINE Alu 1 60 -90 5 1341 214 0 0 157 chr11 99215878 99215980 -22627876 + (CAGAG)n Simple_repeat Simple_repeat 5 90 0 5 1341 621 144 0 0 chr11 99215983 99216087 -22627769 + B1_Mus2 SINE Alu 42 145 -2 5 1341 1420 81 16 0 chr11 99216090 99216276 -22627580 + B2_Mm2 SINE B2 1 189 -6 5 1341 2132 276 61 42 chr11 99216653 99217304 -22626552 + Lx8 LINE L1 6677 7353 -120 5 1341 297 0 0 0 chr11 99217304 99217337 -22626519 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1341 2132 276 61 42 chr11 99217337 99217455 -22626401 + Lx8 LINE L1 7354 7460 -13 5 1341 425 311 0 24 chr11 99217536 99217661 -22626195 - B1_Mur1 SINE Alu -25 124 3 5 1341 21 57 0 0 chr11 99217779 99217814 -22626042 + AT_rich Low_complexity Low_complexity 1 35 0 5 1341 351 347 89 31 chr11 99217817 99218076 -22625780 + B4 SINE B4 1 274 -18 5 1341 333 0 0 0 chr11 99218303 99218340 -22625516 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1341 911 17 8 0 chr11 99219156 99219275 -22624581 + B1_Mus2 SINE Alu 28 147 0 5 1341 180 97 0 0 chr11 99219275 99219306 -22624550 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 5 1341 595 274 88 41 chr11 99219459 99219643 -22624213 - L1MA4 LINE L1 -326 5965 5763 5 1341 1960 164 21 24 chr11 99219643 99220018 -22623838 + ORR1D1 LTR MaLR 1 374 0 5 1341 595 287 246 44 chr11 99220018 99220393 -22623463 - L1MA4 LINE L1 -534 5766 5320 5 1341 204 67 0 0 chr11 99220472 99220502 -22623354 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1341 664 214 15 8 chr11 99220510 99220642 -22623214 - B1_Mur2 SINE Alu -15 134 2 5 1341 1313 299 58 8 chr11 99220648 99221151 -22622705 - L1MA4 LINE L1 -840 5303 4776 5 1341 601 262 12 23 chr11 99221196 99221368 -22622488 - B3A SINE B2 -16 182 13 5 167 1029 116 7 0 chr11 99221368 99221514 -22622342 + B1_Mur4 SINE Alu 2 148 -2 5 1342 649 210 73 0 chr11 99222184 99222308 -22621548 + B1F SINE Alu 1 133 -16 5 1342 1342 89 21 10 chr11 99222310 99222503 -22621353 - B2_Mm2 SINE B2 0 195 1 5 1342 488 122 12 0 chr11 99222516 99222598 -22621258 + (CAA)n Simple_repeat Simple_repeat 1 83 0 5 1342 735 343 62 26 chr11 99223158 99223544 -22620312 + MER45B DNA Tip100 53 452 -588 5 1342 450 250 89 22 chr11 99223580 99223715 -22620141 + B1_Mur1 SINE Alu 6 149 0 5 1342 353 279 72 28 chr11 99223766 99224017 -22619839 + MER45B DNA Tip100 632 893 -147 5 1342 456 218 182 0 chr11 99224107 99224217 -22619639 + B1_Mus2 SINE Alu 3 132 -15 5 1342 261 0 0 0 chr11 99224219 99224248 -22619608 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1342 3511 25 2 0 chr11 99224262 99224657 -22619199 + MTA_Mm LTR MaLR 1 396 0 5 1342 257 278 89 73 chr11 99224694 99224818 -22619038 + MER45B DNA Tip100 915 1040 0 5 1342 298 248 78 52 chr11 99225111 99225160 -22618696 + MER58B DNA MER1_type 31 80 -261 5 1342 1048 211 14 0 chr11 99225160 99225369 -22618487 - B3 SINE B2 -4 212 1 5 1342 298 248 78 52 chr11 99225369 99225434 -22618422 + MER58B DNA MER1_type 81 148 -193 5 1342 225 254 68 0 chr11 99225448 99225566 -22618290 + ORR1B1-int LTR MaLR 634 759 -750 5 1342 929 68 8 0 chr11 99225467 99225600 -22618256 + B1_Mus1 SINE Alu 15 148 0 5 1342 260 27 0 26 chr11 99225612 99225650 -22618206 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 5 1342 337 274 107 13 chr11 99225653 99225812 -22618044 + MER58B DNA MER1_type 157 330 -11 5 1342 180 0 0 0 chr11 99227007 99227027 -22616829 + (TGG)n Simple_repeat Simple_repeat 1 20 0 5 1342 726 189 0 0 chr11 99227055 99227351 -22616505 + (TG)n Simple_repeat Simple_repeat 1 296 0 5 1342 359 311 46 29 chr11 99227351 99227556 -22616300 - B3A SINE B2 -13 203 2 5 1342 392 229 185 28 chr11 99227556 99227755 -22616101 - B4A SINE B4 -60 232 1 5 1342 342 0 0 0 chr11 99228551 99228589 -22615267 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1342 234 0 0 0 chr11 99228589 99228614 -22615242 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1342 333 0 0 0 chr11 99228614 99228650 -22615206 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1342 554 278 14 14 chr11 99228650 99228796 -22615060 - RSINE1 SINE B4 -18 147 2 5 1342 549 44 0 0 chr11 99229495 99229563 -22614293 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1342 2267 108 96 10 chr11 99229564 99229974 -22613882 + RMER16 LTR ERVK 3 533 0 5 1342 399 41 0 0 chr11 99229976 99230025 -22613831 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1342 234 0 0 0 chr11 99230025 99230050 -22613806 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1342 575 293 110 30 chr11 99230060 99230129 -22613727 - B4 SINE B4 -4 288 211 5 1342 576 0 0 0 chr11 99230129 99230193 -22613663 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1342 575 293 110 30 chr11 99230193 99230387 -22613469 - B4 SINE B4 -82 210 4 5 1342 714 254 89 5 chr11 99231788 99231978 -22611878 - B3 SINE B2 -8 208 3 5 1342 255 31 0 0 chr11 99232276 99232308 -22611548 + (C)n Simple_repeat Simple_repeat 1 32 0 5 1342 540 0 0 0 chr11 99232907 99232967 -22610889 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 5 1342 588 226 15 8 chr11 99232979 99233113 -22610743 - B1F SINE Alu -2 147 13 5 1342 920 131 0 0 chr11 99233118 99233255 -22610601 + B1_Mur3 SINE Alu 10 146 -3 5 1342 273 284 172 14 chr11 99233674 99233857 -22609999 - MIR SINE MIR -14 248 36 5 1342 439 269 0 0 chr11 99234362 99234470 -22609386 + PB1D10 SINE Alu 7 114 -3 5 1342 1044 56 0 7 chr11 99234601 99234744 -22609112 + B1_Mus2 SINE Alu 6 147 0 5 1342 186 103 0 0 chr11 99234746 99234775 -22609081 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1342 703 171 57 0 chr11 99234821 99234944 -22608912 - B3 SINE B2 -86 130 1 5 1342 22 0 0 0 chr11 99235587 99235609 -22608247 + AT_rich Low_complexity Low_complexity 1 22 0 5 1342 432 293 0 15 chr11 99236917 99237052 -22606804 + Lx9 LINE L1 7338 7470 -174 5 1342 3699 56 0 0 chr11 99237249 99237696 -22606160 + L1_Mus1 LINE L1 6121 6567 0 5 1342 288 203 87 0 chr11 99237808 99237877 -22605979 - B1F SINE Alu 0 149 75 5 1342 231 243 229 18 chr11 99238452 99238561 -22605295 - MLT1A1 LTR MaLR -4 404 273 5 1342 242 247 135 0 chr11 99238724 99238813 -22605043 - ORR1E LTR MaLR -255 104 4 5 1342 227 303 90 0 chr11 99239085 99239194 -22604662 + B4 SINE B4 78 274 -18 5 1342 200 200 25 0 chr11 99239197 99239237 -22604619 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1342 231 88 0 0 chr11 99239723 99239757 -22604099 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1342 208 122 0 68 chr11 99240240 99240284 -22603572 + C-rich Low_complexity Low_complexity 2 42 0 5 1342 533 238 89 39 chr11 99240284 99240463 -22603393 - Lx8 LINE L1 -61 7412 7225 5 1342 25 0 0 0 chr11 99240702 99240727 -22603129 + AT_rich Low_complexity Low_complexity 1 25 0 5 1342 313 199 241 11 chr11 99240834 99240975 -22602881 + L1MA8 LINE L1 6130 6291 0 5 1342 1555 204 29 42 chr11 99241286 99241387 -22602469 + MTD LTR MaLR 23 117 -302 5 1342 378 0 0 0 chr11 99241387 99241429 -22602427 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 1342 1555 204 29 42 chr11 99241429 99241706 -22602150 + MTD LTR MaLR 118 396 -23 5 1342 342 207 231 0 chr11 99241714 99241835 -22602021 + B3 SINE B2 63 211 -5 5 1342 180 0 0 0 chr11 99241941 99241961 -22601895 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1342 1984 162 79 13 chr11 99242551 99242570 -22601286 + RMER4B LTR ERVK 17 43 -542 5 1342 198 0 0 0 chr11 99242570 99242592 -22601264 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1342 1984 153 138 12 chr11 99242592 99243078 -22600778 + RMER4B LTR ERVK 44 585 0 5 1342 194 311 105 74 chr11 99243347 99243576 -22600280 - L2 LINE L2 -624 2795 2560 5 1342 352 296 65 0 chr11 99243577 99243685 -22600171 + MLT1D LTR MaLR 1 115 -390 5 1342 320 261 97 130 chr11 99244081 99244442 -22599414 + RMER10A LTR ERVL 12 360 -82 5 1342 22 56 0 0 chr11 99245413 99245449 -22598407 + AT_rich Low_complexity Low_complexity 1 36 0 5 1342 1817 146 160 0 chr11 99245709 99246065 -22597791 - MTC LTR MaLR -8 413 1 5 1342 369 290 0 0 chr11 99247289 99247578 -22596278 + (CCG)n Simple_repeat Simple_repeat 1 289 0 5 1342 21 0 0 0 chr11 99249183 99249204 -22594652 + AT_rich Low_complexity Low_complexity 1 21 0 5 1342 203 189 0 0 chr11 99249716 99249753 -22594103 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1342 219 136 33 17 chr11 99251199 99251259 -22592597 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1342 325 299 53 63 chr11 99253493 99253700 -22590156 - L2c LINE L2 0 3387 3183 6 1342 674 300 65 43 chr11 99254155 99254434 -22589422 + B4 SINE B4 8 292 0 6 1342 645 198 0 0 chr11 99254441 99254683 -22589173 + (CA)n Simple_repeat Simple_repeat 1 242 0 6 1342 221 266 51 0 chr11 99255168 99255234 -22588622 + MIRm SINE MIR 78 153 -123 6 1342 353 43 0 0 chr11 99255603 99255650 -22588206 + tRNA-Asn-AAC tRNA tRNA 31 77 0 6 1342 1188 41 7 0 chr11 99255670 99255816 -22588040 + B1_Mus2 SINE Alu 1 147 0 6 1342 204 146 62 0 chr11 99255816 99255864 -22587992 + A-rich Low_complexity Low_complexity 3 53 0 6 1342 229 317 24 0 chr11 99257100 99257182 -22586674 - MIRb SINE MIR -20 248 165 6 1342 558 0 0 0 chr11 99257951 99258013 -22585843 + (TTTTG)n Simple_repeat Simple_repeat 5 66 0 6 1342 219 226 0 19 chr11 99258190 99258244 -22585612 + C-rich Low_complexity Low_complexity 3 55 0 6 1342 264 256 26 0 chr11 99258690 99258768 -22585088 + B4 SINE B4 1 80 -212 6 1342 1151 55 7 0 chr11 99259312 99259457 -22584399 + B1_Mus2 SINE Alu 1 146 -1 6 1342 243 0 0 0 chr11 99259476 99259503 -22584353 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1342 499 170 50 0 chr11 99260927 99261027 -22582829 - RMER1B Other Other -3 1063 959 6 1342 205 152 0 0 chr11 99262066 99262099 -22581757 + G-rich Low_complexity Low_complexity 2 34 0 6 1342 246 156 0 0 chr11 99262647 99262692 -22581164 + G-rich Low_complexity Low_complexity 6 50 0 6 1342 236 289 37 28 chr11 99263885 99263992 -22579864 - PB1D10 SINE Alu -5 112 5 6 1342 859 196 200 6 chr11 99264501 99264681 -22579175 - B3 SINE B2 0 216 2 6 1342 184 262 45 15 chr11 99264842 99264908 -22578948 - L3 LINE CR1 -90 4399 4332 6 1342 599 152 9 0 chr11 99266016 99266128 -22577728 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 6 1342 866 210 0 12 chr11 99266718 99266887 -22576969 + B3 SINE B2 2 168 -48 6 1342 183 80 0 0 chr11 99267362 99267387 -22576469 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 6 1342 26 30 0 0 chr11 99267931 99267964 -22575892 + AT_rich Low_complexity Low_complexity 1 33 0 6 1342 813 230 150 8 chr11 99268116 99268342 -22575514 - Lx8 LINE L1 -361 7112 6850 6 1342 240 59 0 0 chr11 99268342 99268376 -22575480 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 6 1342 813 230 150 8 chr11 99268376 99268403 -22575453 - Lx8 LINE L1 -624 6849 6823 6 1342 266 318 12 0 chr11 99268648 99268733 -22575123 + (TG)n Simple_repeat Simple_repeat 2 87 0 6 1342 352 198 160 0 chr11 99268855 99268961 -22574895 - B3 SINE B2 0 216 94 6 1342 264 127 0 60 chr11 99269061 99269083 -22574773 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 6 1342 1074 144 0 0 chr11 99269083 99269263 -22574593 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 6 1342 1023 152 0 8 chr11 99269263 99269471 -22574385 + (TCTA)n Simple_repeat Simple_repeat 1 206 0 6 1342 1284 89 0 0 chr11 99269471 99269651 -22574205 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 6 1342 264 127 0 60 chr11 99269651 99269664 -22574192 + (TCTA)n Simple_repeat Simple_repeat 4 16 0 6 1342 253 235 34 34 chr11 99269851 99269939 -22573917 + L1MA9 LINE L1 6183 6270 -42 6 1342 182 150 25 0 chr11 99270346 99270386 -22573470 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 6 1342 323 205 26 0 chr11 99272036 99272114 -22571742 + B4A SINE B4 2 81 -211 6 1342 288 0 0 0 chr11 99272114 99272146 -22571710 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1342 235 253 77 87 chr11 99272172 99272276 -22571580 + B4A SINE B4 173 275 -17 6 1342 435 194 0 0 chr11 99272300 99272398 -22571458 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 1342 264 317 0 0 chr11 99273101 99273183 -22570673 - ID4 SINE ID 0 83 2 6 1342 261 358 65 50 chr11 99273593 99273793 -22570063 - L1ME1 LINE L1 -67 6112 5910 6 1342 353 252 48 112 chr11 99273799 99273924 -22569932 - PB1 SINE Alu -3 117 1 6 1342 572 245 7 7 chr11 99274138 99274278 -22569578 - B4 SINE B4 -39 253 114 6 1342 222 324 0 39 chr11 99274268 99274345 -22569511 - B3A SINE B2 -123 75 2 6 1342 364 307 86 8 chr11 99275312 99275440 -22568416 + MLT1A0 LTR MaLR 43 180 -185 6 1342 252 0 0 0 chr11 99275821 99275849 -22568007 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1342 235 250 77 0 chr11 99276045 99276097 -22567759 - MIR SINE MIR -186 76 21 6 1342 241 161 0 61 chr11 99277666 99277732 -22566124 - PB1D10 SINE Alu -2 115 54 6 1342 195 42 0 0 chr11 99277737 99277761 -22566095 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1342 24 0 0 0 chr11 99277761 99277785 -22566071 + AT_rich Low_complexity Low_complexity 1 24 0 6 1342 845 136 0 0 chr11 99277853 99277985 -22565871 + B1_Mur3 SINE Alu 7 138 -11 6 1342 270 0 0 0 chr11 99278798 99278828 -22565028 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1342 294 246 0 0 chr11 99279039 99279108 -22564748 - PB1D10 SINE Alu -28 89 21 6 1342 424 296 69 69 chr11 99279989 99280236 -22563620 - ORSL DNA Tip100 0 275 29 6 1342 435 238 89 0 chr11 99281085 99281186 -22562670 + ID_B1 SINE B4 84 193 -31 6 1342 373 169 12 12 chr11 99281186 99281270 -22562586 + GA-rich Low_complexity Low_complexity 2 85 0 6 1342 324 0 0 0 chr11 99282292 99282328 -22561528 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1342 242 330 20 10 chr11 99282529 99282627 -22561229 - Lx9 LINE L1 -1727 5917 5819 6 1342 328 228 25 0 chr11 99282634 99282713 -22561143 + ID4 SINE ID 3 83 0 6 1342 24 32 0 0 chr11 99282924 99282955 -22560901 + AT_rich Low_complexity Low_complexity 1 31 0 6 1342 192 125 0 0 chr11 99284344 99284376 -22559480 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1342 318 203 54 0 chr11 99284540 99284614 -22559242 + B3 SINE B2 1 78 -138 6 1342 1107 78 175 0 chr11 99284985 99285151 -22558705 + B2_Mm2 SINE B2 1 195 0 6 1342 270 299 172 49 chr11 99285192 99285459 -22558397 - LTR84a LTR ERVL -372 385 86 6 1342 709 219 27 0 chr11 99286306 99286452 -22557404 - B1_Mur4 SINE Alu 0 150 1 6 1342 373 210 53 34 chr11 99287087 99287192 -22556664 + B1F SINE Alu 2 106 -41 6 1342 180 77 0 0 chr11 99287204 99287230 -22556626 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 6 1342 203 61 30 0 chr11 99287245 99287278 -22556578 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 6 1342 300 241 0 0 chr11 99287316 99287374 -22556482 + ID4 SINE ID 24 81 -2 6 1342 266 304 29 0 chr11 99287374 99287385 -22556471 + ID_B1 SINE B4 25 95 -129 6 1342 336 19 0 54 chr11 99287399 99287455 -22556401 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1342 1322 62 6 0 chr11 99288512 99288689 -22555167 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 6 1342 297 0 0 0 chr11 99288689 99288722 -22555134 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 6 1342 342 0 0 0 chr11 99288722 99288759 -22555097 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 6 1342 203 319 75 0 chr11 99288971 99289065 -22554791 + MIR SINE MIR 152 252 -10 6 1342 198 250 0 0 chr11 99289335 99289407 -22554449 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1342 487 293 36 6 chr11 99289512 99289677 -22554179 + L1MB7 LINE L1 6005 6174 -10 6 1342 537 151 23 11 chr11 99290958 99291132 -22552724 + (TCTCTG)n Simple_repeat Simple_repeat 2 177 0 6 1342 528 45 0 0 chr11 99291132 99291199 -22552657 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1342 231 80 0 74 chr11 99293357 99293411 -22550445 + GA-rich Low_complexity Low_complexity 4 53 0 6 1342 580 186 0 27 chr11 99293896 99294045 -22549811 + (CCA)n Simple_repeat Simple_repeat 2 146 0 6 1342 1111 183 5 52 chr11 99294466 99294679 -22549177 + B3 SINE B2 1 203 -13 6 1342 218 219 0 0 chr11 99294681 99294722 -22549134 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 6 1342 293 98 0 47 chr11 99294875 99294939 -22548917 + (A)n Simple_repeat Simple_repeat 1 61 0 6 1342 547 319 0 0 chr11 99295885 99296029 -22547827 + RSINE1 SINE B4 1 144 -21 6 1342 213 283 17 0 chr11 99296033 99296093 -22547763 + CT-rich Low_complexity Low_complexity 2 62 0 6 1342 271 268 174 10 chr11 99296180 99296278 -22547578 + PB1D10 SINE Alu 3 116 -1 6 1342 446 216 6 0 chr11 99296299 99296470 -22547386 + (CA)n Simple_repeat Simple_repeat 2 173 0 6 1342 601 162 29 0 chr11 99296535 99296708 -22547148 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 1342 966 242 99 9 chr11 99297385 99297443 -22546413 - B4 SINE B4 -9 283 222 6 1342 411 21 0 0 chr11 99297443 99297491 -22546365 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1342 966 242 99 9 chr11 99297491 99297665 -22546191 - B4 SINE B4 -71 221 30 6 1342 380 274 38 0 chr11 99298337 99298443 -22545413 + PB1D10 SINE Alu 1 110 -7 6 1342 369 0 0 0 chr11 99298449 99298490 -22545366 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 6 1342 401 307 0 14 chr11 99299983 99300125 -22543731 + B1F2 SINE Alu 1 140 -9 6 1342 675 293 68 41 chr11 99300249 99300544 -22543312 - Lx8 LINE L1 -5 7468 7166 6 1342 210 37 0 0 chr11 99300546 99300573 -22543283 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1342 333 0 0 0 chr11 99301482 99301519 -22542337 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1342 245 350 38 11 chr11 99301696 99301881 -22541975 + ORR1E LTR MaLR 8 197 -162 6 1342 21 0 0 0 chr11 99302506 99302527 -22541329 + AT_rich Low_complexity Low_complexity 1 21 0 6 1342 2547 37 3 65 chr11 99303242 99303420 -22540436 - MTA_Mm LTR MaLR -47 349 188 6 1342 1531 68 5 0 chr11 99303420 99303612 -22540244 - B2_Mm1a SINE B2 0 193 1 6 1342 2547 37 3 65 chr11 99303612 99303805 -22540051 - MTA_Mm LTR MaLR -209 187 1 6 1342 1353 230 144 27 chr11 99303810 99304185 -22539671 - MTD LTR MaLR 0 419 1 6 1342 776 266 139 23 chr11 99304299 99304557 -22539299 + B4A SINE B4 1 288 -4 7 1342 284 326 61 0 chr11 99304570 99304717 -22539139 - RMER15 LTR ERVL -15 560 405 7 1342 669 236 0 14 chr11 99305138 99305284 -22538572 - B1_Mur3 SINE Alu -2 147 4 7 1342 322 317 127 47 chr11 99305464 99306021 -22537835 + L1MEg LINE L1 1035 1670 -4555 7 1342 1688 131 188 22 chr11 99306051 99306371 -22537485 + ORR1D1 LTR MaLR 1 373 -1 7 1342 726 302 55 24 chr11 99306516 99306815 -22537041 + Tigger7 DNA MER2_type 82 389 -2102 7 1342 279 0 0 0 chr11 99307250 99307281 -22536575 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1342 487 294 85 115 chr11 99307323 99307688 -22536168 - ORR1E LTR MaLR -2 357 4 7 1342 1550 299 71 36 chr11 99307688 99308298 -22535558 - ORR1E-int LTR MaLR -50 1530 899 7 1342 180 297 55 48 chr11 99311302 99311447 -22532409 - L2c LINE L2 -172 3215 3070 7 1342 243 0 0 0 chr11 99312543 99312570 -22531286 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1342 268 260 85 47 chr11 99312854 99312983 -22530873 - MTD LTR MaLR -269 150 17 7 1342 194 350 117 0 chr11 99313065 99313262 -22530594 + MIRb SINE MIR 42 261 -7 7 1342 417 292 35 18 chr11 99313363 99313534 -22530322 + L1MA4 LINE L1 5751 5924 -376 7 1342 191 222 12 0 chr11 99313711 99313792 -22530064 + GA-rich Low_complexity Low_complexity 4 85 0 7 1342 851 208 0 0 chr11 99313904 99314048 -22529808 + B1_Mur2 SINE Alu 1 144 -5 7 1342 253 219 17 26 chr11 99314306 99314423 -22529433 + GA-rich Low_complexity Low_complexity 1 116 0 7 1342 477 0 0 0 chr11 99314600 99314653 -22529203 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1342 503 157 14 0 chr11 99314698 99314838 -22529018 + (CAGA)n Simple_repeat Simple_repeat 2 143 0 7 1342 353 88 0 34 chr11 99314838 99314897 -22528959 + HAL1-3A_ME LINE L1 1978 2034 -824 7 1342 3866 53 0 4 chr11 99314900 99315369 -22528487 - L1Md_F2 LINE L1 -158 6424 5958 7 1342 435 249 230 22 chr11 99316467 99316689 -22527167 - RMER13A LTR ERVK -410 450 183 7 1342 405 0 0 0 chr11 99316720 99316765 -22527091 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 7 1342 1109 81 0 18 chr11 99316765 99316928 -22526928 - B2_Mm2 SINE B2 -34 161 2 7 1342 1813 240 50 42 chr11 99317195 99317691 -22526165 - Lx8 LINE L1 -408 7065 6566 7 1342 416 211 11 11 chr11 99317698 99317789 -22526067 - Lx8 LINE L1 -1009 6464 6374 7 1342 10411 76 13 11 chr11 99317800 99319578 -22524278 + Lx3_Mus LINE L1 5232 7009 0 7 1342 900 28 0 0 chr11 99319826 99319933 -22523923 + (GAA)n Simple_repeat Simple_repeat 2 108 0 7 1342 576 0 0 0 chr11 99320007 99320071 -22523785 + (TTTTA)n Simple_repeat Simple_repeat 3 66 0 7 1342 252 257 86 38 chr11 99320106 99320211 -22523645 - L2a LINE L2 -2 3424 3315 7 1342 427 284 0 10 chr11 99320911 99321014 -22522842 + PB1D10 SINE Alu 10 111 -6 7 1342 2719 296 49 10 chr11 99321424 99322254 -22521602 - Lx8 LINE L1 -352 7121 6259 7 1342 1077 82 0 0 chr11 99322408 99322542 -22521314 + B1_Mus1 SINE Alu 2 135 -13 7 1342 599 0 0 14 chr11 99322542 99322614 -22521242 + (CAAAA)n Simple_repeat Simple_repeat 3 73 0 7 1342 253 329 0 0 chr11 99322668 99322750 -22521106 + PB1D10 SINE Alu 29 110 -7 7 1342 185 94 0 30 chr11 99322779 99322812 -22521044 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 7 1342 243 181 0 0 chr11 99323483 99323555 -22520301 + GA-rich Low_complexity Low_complexity 1 72 0 7 1342 490 221 50 24 chr11 99323625 99323836 -22520020 + B4 SINE B4 1 251 -41 7 1342 387 0 0 0 chr11 99323847 99323890 -22519966 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1342 615 301 1 5 chr11 99324017 99324201 -22519655 + Lx7 LINE L1 7136 7310 -163 7 1342 198 174 0 0 chr11 99324252 99324298 -22519558 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 7 1342 198 0 0 0 chr11 99324405 99324427 -22519429 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1342 405 0 0 0 chr11 99325654 99325699 -22518157 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1342 410 53 18 0 chr11 99325699 99325756 -22518100 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 1342 369 0 0 0 chr11 99326368 99326409 -22517447 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1342 261 222 0 0 chr11 99326902 99326965 -22516891 + (TATG)n Simple_repeat Simple_repeat 1 63 0 7 1342 526 187 0 101 chr11 99326967 99327086 -22516770 - B1F SINE Alu -40 109 3 7 1342 435 19 0 0 chr11 99328657 99328709 -22515147 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1342 669 58 0 0 chr11 99328786 99328872 -22514984 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 1342 236 267 0 0 chr11 99330502 99330547 -22513309 - B4 SINE B4 -16 276 232 7 1342 219 69 0 0 chr11 99330555 99330584 -22513272 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1342 581 307 73 31 chr11 99330628 99330887 -22512969 - B4A SINE B4 -18 274 5 7 1342 387 285 189 21 chr11 99330887 99331077 -22512779 - B4 SINE B4 -70 222 1 7 1342 1162 200 9 5 chr11 99331213 99331424 -22512432 + B3 SINE B2 2 213 -3 7 1342 280 257 110 37 chr11 99331526 99331635 -22512221 - RSINE1 SINE B4 -23 142 26 7 1342 496 248 69 0 chr11 99332147 99332292 -22511564 + MER5A1 DNA MER1_type 9 163 -3 7 1342 192 385 0 9 chr11 99333004 99333109 -22510747 + MIRb SINE MIR 56 159 -109 7 1342 761 255 112 12 chr11 99333273 99333523 -22510333 - B4 SINE B4 -15 277 3 7 1342 261 0 0 0 chr11 99334015 99334044 -22509812 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1342 5272 10 0 0 chr11 99334055 99334636 -22509220 - L1Md_T LINE L1 0 6582 6002 7 1342 249 301 106 25 chr11 99335315 99335475 -22508381 - MLT1G LTR MaLR -8 583 411 7 1342 207 157 0 0 chr11 99335594 99335645 -22508211 + T-rich Low_complexity Low_complexity 1 51 0 7 1342 219 338 0 0 chr11 99336931 99337002 -22506854 - ID4_ SINE ID -9 74 4 7 1342 488 246 187 10 chr11 99337074 99337283 -22506573 - MER2 DNA MER2_type 0 345 100 7 1342 642 244 68 48 chr11 99337889 99338096 -22505760 + B3 SINE B2 2 212 -4 7 1342 251 191 0 16 chr11 99340904 99340968 -22502888 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 7 1342 328 332 117 21 chr11 99343128 99343411 -22500445 + L2 LINE L2 1285 1594 -1825 7 1342 216 224 35 0 chr11 99343669 99343727 -22500129 + CT-rich Low_complexity Low_complexity 5 64 0 7 1342 304 352 0 9 chr11 99344149 99344255 -22499601 - PB1D10 SINE Alu -12 105 1 7 1342 212 333 11 11 chr11 99344752 99344840 -22499016 + MIRc SINE MIR 77 164 -104 7 1342 352 325 88 70 chr11 99345635 99345966 -22497890 + ORR1E LTR MaLR 6 342 -17 7 1342 768 165 11 31 chr11 99346030 99346293 -22497563 + GA-rich Low_complexity Low_complexity 1 257 0 7 1342 378 302 17 4 chr11 99346295 99346479 -22497377 - B4A SINE B4 -77 215 1 7 1342 433 254 24 39 chr11 99346575 99346702 -22497154 - B4A SINE B4 -55 237 113 7 1342 481 271 22 15 chr11 99347540 99347675 -22496181 - B1F SINE Alu -1 148 13 7 1342 387 0 0 0 chr11 99348226 99348269 -22495587 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1342 537 157 0 0 chr11 99348324 99348413 -22495443 - B3A SINE B2 -109 89 1 7 1342 1692 204 95 89 chr11 99348577 99349093 -22494763 - Lx8 LINE L1 -143 7330 6812 7 1342 489 62 0 0 chr11 99349211 99349276 -22494580 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1342 468 248 116 7 chr11 99349333 99349479 -22494377 - B4A SINE B4 -29 263 102 7 1342 306 125 0 0 chr11 99349666 99349714 -22494142 + (TTA)n Simple_repeat Simple_repeat 2 49 0 7 1342 804 214 75 20 chr11 99351102 99351302 -22492554 + ID_B1 SINE B4 2 212 -12 7 1342 588 238 85 6 chr11 99351362 99351527 -22492329 - B3A SINE B2 -17 181 4 7 1342 230 290 43 0 chr11 99352297 99352366 -22491490 + MIRb SINE MIR 123 194 -74 7 1343 409 258 148 58 chr11 99355405 99355648 -22488208 + B4A SINE B4 1 265 -27 7 1343 351 0 0 0 chr11 99355965 99356004 -22487852 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1343 667 296 53 5 chr11 99356379 99356569 -22487287 - ID_B1 SINE B4 -10 214 16 7 1343 444 313 81 101 chr11 99357465 99357810 -22486046 + ORR1E LTR MaLR 1 338 -21 7 1343 942 269 61 11 chr11 99359452 99359730 -22484126 - B4A SINE B4 0 292 1 7 1343 418 200 20 20 chr11 99360766 99360868 -22482988 - PB1D10 SINE Alu -1 116 15 7 1343 245 208 0 14 chr11 99362100 99362173 -22481683 + CT-rich Low_complexity Low_complexity 2 73 0 7 1343 194 150 0 24 chr11 99362217 99362258 -22481598 + CT-rich Low_complexity Low_complexity 1 40 0 7 1343 549 231 14 29 chr11 99362270 99362408 -22481448 - B3 SINE B2 0 216 81 7 1343 365 102 17 0 chr11 99362439 99362498 -22481358 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 7 1343 297 0 0 0 chr11 99363246 99363279 -22480577 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1343 312 27 0 0 chr11 99363936 99363973 -22479883 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1343 414 0 0 0 chr11 99364077 99364123 -22479733 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1343 750 200 23 0 chr11 99364602 99364732 -22479124 + B1_Mur1 SINE Alu 2 134 -15 7 1343 258 291 76 0 chr11 99364815 99364894 -22478962 + L1MA5 LINE L1 6211 6295 -5 7 1343 333 0 0 0 chr11 99364972 99365009 -22478847 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1343 310 275 27 27 chr11 99365039 99365185 -22478671 - RLTR15 LTR ERVK -53 306 161 7 1343 463 177 66 51 chr11 99365231 99365368 -22478488 - RLTR15 LTR ERVK -188 171 33 7 1343 882 254 98 39 chr11 99365388 99365642 -22478214 - B4A SINE B4 -23 269 1 7 1343 360 0 0 0 chr11 99365741 99365781 -22478075 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1343 212 297 62 0 chr11 99366427 99366491 -22477365 + MIR SINE MIR 195 262 0 7 1343 427 227 8 15 chr11 99366730 99366864 -22476992 + CT-rich Low_complexity Low_complexity 2 134 0 8 1343 795 305 75 57 chr11 99366891 99367382 -22476474 + MLT1D LTR MaLR 1 500 -5 8 1343 270 143 0 0 chr11 99367384 99367433 -22476423 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1343 858 169 10 42 chr11 99368775 99368967 -22474889 + Lx4A LINE L1 6867 7052 -6 8 1343 411 107 0 0 chr11 99368968 99369043 -22474813 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 8 1343 235 357 76 0 chr11 99369505 99369662 -22474194 + MIRb SINE MIR 38 206 -62 8 1343 450 0 0 0 chr11 99369954 99370004 -22473852 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1343 423 280 84 2 chr11 99370197 99370358 -22473498 - MIR SINE MIR -28 240 68 8 1343 678 173 0 0 chr11 99370395 99370505 -22473351 - PB1D9 SINE Alu -7 113 4 8 1343 342 0 0 0 chr11 99372535 99372573 -22471283 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1343 180 349 63 8 chr11 99372662 99372789 -22471067 + MIR SINE MIR 63 196 -66 8 1343 306 0 0 0 chr11 99373045 99373079 -22470777 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1343 407 256 153 10 chr11 99373094 99373287 -22470569 - B4A SINE B4 -21 271 41 8 1343 419 265 29 36 chr11 99375174 99375311 -22468545 + B1F SINE Alu 9 144 -5 8 1343 192 231 0 0 chr11 99376193 99376245 -22467611 + (CAA)n Simple_repeat Simple_repeat 2 53 0 8 1343 220 336 46 9 chr11 99376461 99376569 -22467287 + MIRc SINE MIR 19 130 -138 8 1343 1103 148 39 5 chr11 99377280 99377484 -22466372 - URR1B DNA MER1_type -6 219 9 8 1343 399 21 0 0 chr11 99377686 99377734 -22466122 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1343 219 288 123 12 chr11 99378517 99378598 -22465258 - MIRc SINE MIR -115 153 64 8 1343 211 214 58 25 chr11 99378714 99378796 -22465060 + MIR SINE MIR 56 145 -131 8 1343 304 259 144 0 chr11 99379042 99379181 -22464675 - MER103 DNA DNA -4 162 4 8 1343 236 254 0 43 chr11 99381517 99381587 -22462269 + L2a LINE L2 3359 3425 -1 8 1343 219 114 0 0 chr11 99381773 99381808 -22462048 + (TC)n Simple_repeat Simple_repeat 2 36 0 8 1343 615 92 0 0 chr11 99381926 99382013 -22461843 + (TTTTC)n Simple_repeat Simple_repeat 4 90 0 8 1343 235 305 0 47 chr11 99383417 99383503 -22460353 - MLT1D LTR MaLR -138 367 286 8 1343 1030 258 149 11 chr11 99383655 99384023 -22459833 - MTD LTR MaLR 0 419 1 8 1343 279 203 17 0 chr11 99384292 99384351 -22459505 - MLT1D LTR MaLR -317 188 129 8 1343 855 144 20 27 chr11 99385047 99385197 -22458659 + B1_Mur4 SINE Alu 2 150 0 8 1343 705 56 0 0 chr11 99385207 99385297 -22458559 + (CCAA)n Simple_repeat Simple_repeat 2 91 0 8 1343 3335 61 2 0 chr11 99385993 99386402 -22457454 + L1_Mus1 LINE L1 6157 6566 -1 8 1343 396 0 0 0 chr11 99386795 99386839 -22457017 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1343 510 46 0 0 chr11 99386940 99387005 -22456851 + (TATG)n Simple_repeat Simple_repeat 4 68 0 8 1343 898 102 41 0 chr11 99387005 99387152 -22456704 - B2_Mm2 SINE B2 -42 153 1 8 1343 300 281 82 7 chr11 99387159 99387306 -22456550 - L1ME3B LINE L1 -313 5927 5770 8 1343 414 0 0 0 chr11 99387309 99387355 -22456501 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1343 402 21 0 0 chr11 99387360 99387407 -22456449 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1343 785 195 12 12 chr11 99387409 99387570 -22456286 - B3 SINE B2 -51 165 5 8 1343 505 239 0 26 chr11 99388190 99388306 -22455550 + PB1D10 SINE Alu 4 116 -1 8 1343 715 160 0 20 chr11 99388586 99388739 -22455117 + CT-rich Low_complexity Low_complexity 1 150 0 8 1343 237 163 0 0 chr11 99389094 99389143 -22454713 + (CAT)n Simple_repeat Simple_repeat 2 50 0 8 1343 361 238 10 29 chr11 99389144 99389248 -22454608 + Charlie20a DNA Charlie 475 576 -231 8 1343 248 176 15 0 chr11 99389791 99389859 -22453997 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1343 28 61 0 0 chr11 99389867 99389916 -22453940 + AT_rich Low_complexity Low_complexity 1 49 0 8 1343 5592 105 179 3 chr11 99390565 99391444 -22452412 - RLTR13D4 LTR ERVK 0 1033 1 8 1343 342 0 0 0 chr11 99391693 99391731 -22452125 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1343 2291 183 0 10 chr11 99391741 99392127 -22451729 - Lx5 LINE L1 -261 6789 6408 8 1343 1632 146 71 4 chr11 99392119 99392387 -22451469 + L1_Mur2 LINE L1 5529 5814 -63 8 1343 252 86 0 0 chr11 99392427 99392462 -22451394 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1343 216 0 0 0 chr11 99392467 99392491 -22451365 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1343 1127 66 0 0 chr11 99392491 99392627 -22451229 - B1_Mm SINE Alu -10 137 2 8 1343 441 0 0 0 chr11 99392628 99392677 -22451179 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1343 287 257 136 34 chr11 99393271 99393342 -22450514 + L1MA4 LINE L1 5825 5895 -405 8 1343 270 0 0 0 chr11 99393342 99393372 -22450484 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1343 287 257 136 34 chr11 99393372 99393477 -22450379 + L1MA4 LINE L1 5896 6018 -282 8 1343 728 270 57 5 chr11 99393573 99393785 -22450071 - ID_B1 SINE B4 -1 223 1 8 1343 1030 306 93 61 chr11 99394277 99394409 -22449447 - L1MDa LINE L1 -4802 1831 1706 8 1343 450 0 0 0 chr11 99394409 99394459 -22449397 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 8 1343 333 0 0 0 chr11 99394466 99394503 -22449353 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1343 1030 306 93 61 chr11 99394503 99394682 -22449174 - L1MDa LINE L1 -4934 1699 1506 8 1343 1473 160 85 114 chr11 99394682 99394873 -22448983 + RMER17C LTR ERVK 1 222 -188 8 1343 546 54 0 0 chr11 99394873 99394947 -22448909 + (TC)n Simple_repeat Simple_repeat 2 75 0 8 1343 1473 160 85 114 chr11 99394947 99395177 -22448679 + RMER17C LTR ERVK 223 410 0 8 1343 1030 306 93 61 chr11 99395177 99395860 -22447996 - L1MDa LINE L1 -5128 1505 799 8 1343 963 264 39 30 chr11 99396137 99396442 -22447414 - L1MDa LINE L1 -6242 391 84 8 1343 909 187 32 16 chr11 99396474 99396664 -22447192 + B2_Mm2 SINE B2 3 195 0 8 1343 1209 61 0 0 chr11 99396666 99396813 -22447043 + B1_Mus2 SINE Alu 1 147 0 8 1343 374 122 37 0 chr11 99396813 99396920 -22446936 + (CAAA)n Simple_repeat Simple_repeat 2 112 0 8 1343 340 258 32 0 chr11 99396932 99397025 -22446831 + Lx8 LINE L1 6392 6487 -986 8 1343 1662 294 133 9 chr11 99397025 99397670 -22446186 + Lx8 LINE L1 6746 7470 -3 8 1343 234 0 0 0 chr11 99399247 99399273 -22444583 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1343 459 0 0 0 chr11 99399273 99399323 -22444533 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1343 256 300 43 0 chr11 99399338 99399408 -22444448 - RSINE1 SINE B4 -71 94 22 8 1343 883 228 192 47 chr11 99399409 99399731 -22444125 + ORR1D2 LTR MaLR 2 370 0 8 1343 355 271 60 64 chr11 99400104 99400331 -22443525 + MIR SINE MIR 42 268 0 8 1343 213 65 0 0 chr11 99400771 99400802 -22443054 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1343 285 259 0 23 chr11 99401882 99401969 -22441887 + MIR SINE MIR 116 200 -62 8 1343 37 39 0 0 chr11 99402863 99402914 -22440942 + AT_rich Low_complexity Low_complexity 1 51 0 8 1343 417 211 0 0 chr11 99403352 99403480 -22440376 + (TG)n Simple_repeat Simple_repeat 1 128 0 8 1343 490 286 23 45 chr11 99403480 99403656 -22440200 - B3A SINE B2 -16 182 11 8 1343 300 27 0 0 chr11 99405006 99405043 -22438813 + (TTAAA)n Simple_repeat Simple_repeat 1 37 0 8 1343 246 257 71 0 chr11 99405185 99405255 -22438601 - 5S rRNA rRNA -11 110 36 8 1343 483 117 0 0 chr11 99405332 99405426 -22438430 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 8 1343 408 20 0 0 chr11 99405932 99405981 -22437875 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1343 1137 116 0 0 chr11 99406046 99406219 -22437637 + (TTC)n Simple_repeat Simple_repeat 3 175 0 8 1343 372 94 0 0 chr11 99406221 99406274 -22437582 + (TCC)n Simple_repeat Simple_repeat 2 54 0 8 1343 232 206 16 0 chr11 99406298 99406361 -22437495 + Lx7 LINE L1 7044 7107 -589 8 1343 247 254 0 0 chr11 99406361 99406432 -22437424 + (CAGCT)n Simple_repeat Simple_repeat 2 72 0 8 1343 765 265 77 52 chr11 99406456 99406552 -22437304 + Lx8 LINE L1 7155 7244 -229 8 1343 5565 65 41 4 chr11 99406552 99407277 -22436579 + L1Md_F2 LINE L1 5830 6581 -1 8 1343 765 265 77 52 chr11 99407277 99407490 -22436366 + Lx8 LINE L1 7245 7472 -1 8 1343 794 110 134 0 chr11 99407497 99407624 -22436232 + B1_Mus1 SINE Alu 5 148 0 8 1343 372 94 0 0 chr11 99407624 99407677 -22436179 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 8 1343 2283 167 79 31 chr11 99407762 99407854 -22436002 - RLTR16 LTR ERVK 0 505 415 8 1343 636 38 0 0 chr11 99407854 99407933 -22435923 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1343 2283 167 79 31 chr11 99407933 99408322 -22435534 - RLTR16 LTR ERVK -91 414 2 8 1343 297 281 49 33 chr11 99409316 99409463 -22434393 - B3 SINE B2 -2 214 53 8 1343 893 120 71 12 chr11 99409440 99409609 -22434247 + RLTR15 LTR ERVK 181 359 0 8 1343 265 314 45 70 chr11 99409617 99409732 -22434124 - ORR1E LTR MaLR -255 115 4 8 1343 293 323 77 18 chr11 99409756 99409926 -22433930 - L1M5 LINE L1 -901 5543 5364 8 1343 253 306 0 0 chr11 99409908 99409993 -22433863 - L1M2 LINE L1 -515 5776 5692 8 1343 491 235 92 81 chr11 99410061 99410237 -22433619 - ORR1E LTR MaLR -7 367 181 8 1343 888 136 0 0 chr11 99410237 99410413 -22433443 + (GA)n Simple_repeat Simple_repeat 1 176 0 8 1343 278 279 69 64 chr11 99410413 99410439 -22433417 - ORR1E LTR MaLR -183 191 165 8 1343 216 217 0 0 chr11 99410439 99410531 -22433325 + GA-rich Low_complexity Low_complexity 1 92 0 8 1343 807 152 0 0 chr11 99410542 99410720 -22433136 + GA-rich Low_complexity Low_complexity 2 179 0 8 1343 605 229 140 0 chr11 99410720 99410877 -22432979 - ORR1E LTR MaLR -175 184 6 8 1343 2025 202 49 15 chr11 99410887 99411294 -22432562 + MTC LTR MaLR 1 421 0 8 1343 267 79 0 0 chr11 99414302 99414340 -22429516 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1343 1284 89 0 0 chr11 99414444 99414624 -22429232 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1343 294 114 71 0 chr11 99414624 99414683 -22429173 + CT-rich Low_complexity Low_complexity 5 66 0 8 1343 623 214 148 37 chr11 99414699 99414888 -22428968 - B3 SINE B2 -1 215 6 8 1343 776 282 95 9 chr11 99414892 99415103 -22428753 - B4 SINE B4 -63 229 1 8 1343 180 111 0 0 chr11 99415837 99415864 -22427992 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1343 358 164 12 37 chr11 99415910 99415992 -22427864 + ORR1A3-int LTR MaLR 561 640 -1323 9 1343 309 26 0 0 chr11 99415992 99416030 -22427826 + MERVL-int LTR ERVL 5448 5485 0 9 1343 2279 7 4 0 chr11 99416030 99416307 -22427549 + MT2_Mm LTR ERVL 1 278 -215 9 1343 393 240 21 0 chr11 99416310 99416406 -22427450 - B3 SINE B2 -111 105 8 9 1343 425 133 0 13 chr11 99416553 99416629 -22427227 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 9 1343 219 263 182 0 chr11 99416631 99416730 -22427126 - PB1D10 SINE Alu 0 117 1 9 1343 23 33 0 0 chr11 99417003 99417033 -22426823 + AT_rich Low_complexity Low_complexity 1 30 0 9 1343 184 314 77 19 chr11 99417092 99417196 -22426660 + MIRb SINE MIR 5 114 -154 9 1343 312 70 0 0 chr11 99417357 99417400 -22426456 + (TAA)n Simple_repeat Simple_repeat 1 43 0 9 1343 24 32 0 0 chr11 99418726 99418757 -22425099 + AT_rich Low_complexity Low_complexity 1 31 0 9 1343 495 0 0 0 chr11 99419731 99419786 -22424070 + (T)n Simple_repeat Simple_repeat 1 55 0 9 1343 3062 142 15 9 chr11 99421558 99422083 -22421773 - RLTR12B LTR ERVK 0 528 1 9 1343 1184 141 15 0 chr11 99423521 99423720 -22420136 - URR1B DNA MER1_type -23 202 1 9 1343 263 305 60 22 chr11 99424715 99424849 -22419007 + MIRc SINE MIR 11 149 -119 9 1343 341 112 366 30 chr11 99424882 99424983 -22418873 - B2_Mm2 SINE B2 -14 181 47 9 1343 1220 107 11 0 chr11 99425049 99425226 -22418630 - B2_Mm1t SINE B2 -14 179 1 9 1343 830 268 123 81 chr11 99425377 99425551 -22418305 - MTEa LTR MaLR -7 372 202 9 1343 486 0 0 0 chr11 99425551 99425605 -22418251 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 1343 830 268 123 81 chr11 99425605 99425787 -22418069 - MTEa LTR MaLR -178 201 1 9 1343 233 314 29 19 chr11 99425834 99425938 -22417918 - MIR3 SINE MIR -19 189 85 9 1343 644 0 13 0 chr11 99426408 99426484 -22417372 + (GA)n Simple_repeat Simple_repeat 1 77 0 9 1343 1753 231 19 5 chr11 99429252 99429665 -22414191 - MTD LTR MaLR 0 419 1 9 1343 549 125 0 0 chr11 99429993 99430081 -22413775 + (CA)n Simple_repeat Simple_repeat 2 89 0 9 1343 220 224 186 17 chr11 99430086 99430145 -22413711 - ID2 SINE ID -13 70 2 9 1343 33 0 0 0 chr11 99430145 99430178 -22413678 + AT_rich Low_complexity Low_complexity 1 33 0 9 1343 447 312 24 0 chr11 99430585 99430755 -22413101 - L1MA5 LINE L1 -1 6299 6126 9 1343 1039 188 28 24 chr11 99431732 99431945 -22411911 - B3 SINE B2 0 216 3 9 1343 872 206 5 61 chr11 99432391 99432587 -22411269 - B3 SINE B2 -5 211 27 9 1343 579 209 57 14 chr11 99432607 99432748 -22411108 - B1_Mur3 SINE Alu -1 148 2 9 1343 632 236 159 37 chr11 99432799 99432962 -22410894 + B3A SINE B2 1 183 -15 9 1343 180 77 0 0 chr11 99432968 99432994 -22410862 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1343 279 322 0 50 chr11 99433648 99433769 -22410087 - PB1D10 SINE Alu 0 117 3 9 1343 23 0 0 0 chr11 99435108 99435131 -22408725 + AT_rich Low_complexity Low_complexity 1 23 0 9 1343 188 67 33 0 chr11 99435299 99435329 -22408527 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 9 1343 312 274 123 68 chr11 99435523 99435742 -22408114 - LTR50 LTR ERVL -542 253 23 9 1343 191 114 29 0 chr11 99435819 99435854 -22408002 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 9 1343 626 237 8 8 chr11 99435909 99436041 -22407815 - RSINE1 SINE B4 -31 134 3 9 1343 434 263 0 0 chr11 99436049 99436148 -22407708 - PB1D7 SINE Alu -5 115 17 9 1343 366 74 0 0 chr11 99436193 99436247 -22407609 + (TATTG)n Simple_repeat Simple_repeat 5 58 0 9 1343 599 225 62 8 chr11 99436278 99436408 -22407448 - B4A SINE B4 -4 288 152 9 1343 387 314 64 17 chr11 99437095 99437267 -22406589 + ERVL-E-int LTR ERVL 2548 2727 -2940 9 1343 648 171 0 0 chr11 99437302 99437442 -22406414 + GA-rich Low_complexity Low_complexity 2 141 0 9 1343 270 379 77 31 chr11 99437442 99437793 -22406063 + ERVL-E-int LTR ERVL 2840 3206 -2279 9 1343 21 0 0 0 chr11 99438755 99438776 -22405080 + AT_rich Low_complexity Low_complexity 1 21 0 9 1343 343 304 86 29 chr11 99438843 99438982 -22404874 - RSINE1 SINE B4 -16 149 3 9 1343 182 245 27 146 chr11 99439009 99439119 -22404737 - L3 LINE CR1 -3543 946 850 9 1343 369 0 0 0 chr11 99439794 99439835 -22404021 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 9 1343 905 229 161 19 chr11 99439996 99440380 -22403476 - L1MC2 LINE L1 -389 5944 5448 9 1343 247 371 0 0 chr11 99444663 99444838 -22399018 + (GGCTG)n Simple_repeat Simple_repeat 5 179 0 9 1343 462 65 0 0 chr11 99445573 99445635 -22398221 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1343 192 179 0 0 chr11 99445840 99445879 -22397977 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1343 414 229 51 0 chr11 99446012 99446130 -22397726 - B3A SINE B2 -10 188 65 9 1343 738 294 43 4 chr11 99446144 99446421 -22397435 - L1M3 LINE L1 -1534 4606 4319 9 1343 269 26 26 0 chr11 99446421 99446459 -22397397 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1343 382 329 32 28 chr11 99446472 99446719 -22397137 - L1M3 LINE L1 -1918 4222 3975 9 1343 417 86 0 0 chr11 99446757 99446815 -22397041 + (TCTG)n Simple_repeat Simple_repeat 3 60 0 9 1343 471 281 9 0 chr11 99446843 99446957 -22396899 - RSINE1 SINE B4 -29 136 22 9 1343 882 253 69 112 chr11 99446974 99447566 -22396290 - L1M3 LINE L1 -2185 3955 3389 9 1343 439 265 403 26 chr11 99447611 99447807 -22396049 - B4A SINE B4 -8 284 15 9 1343 2860 222 36 61 chr11 99447912 99448718 -22395138 - Lx9 LINE L1 0 7644 6859 9 1343 731 275 18 31 chr11 99448769 99448994 -22394862 + ID_B1 SINE B4 3 224 0 9 1343 999 74 0 0 chr11 99449212 99449334 -22394522 + L1Md_F2 LINE L1 5465 5586 -297 9 1343 7941 48 24 2 chr11 99449335 99450307 -22393549 + L1Md_F2 LINE L1 5588 6580 -2 9 1343 547 282 0 58 chr11 99450371 99450544 -22393312 - RSINE1 SINE B4 0 165 3 9 1343 271 182 26 0 chr11 99450554 99450631 -22393225 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 9 1343 544 234 33 11 chr11 99451325 99451474 -22392382 + MTD LTR MaLR 255 404 -15 9 1343 488 257 19 0 chr11 99451553 99451658 -22392198 + RSINE1 SINE B4 1 107 -58 9 1343 209 360 0 0 chr11 99452384 99452559 -22391297 + (GGCTG)n Simple_repeat Simple_repeat 5 179 0 9 1343 240 321 66 22 chr11 99453160 99453297 -22390559 - MIR SINE MIR -4 258 116 9 1343 1358 248 13 13 chr11 99453305 99453603 -22390253 + Lx6 LINE L1 7136 7433 -27 9 1343 526 283 100 79 chr11 99453789 99454069 -22389787 - B4A SINE B4 -3 289 4 9 1343 348 228 174 68 chr11 99454378 99454510 -22389346 + RSINE1 SINE B4 8 153 -12 9 1343 1069 51 0 0 chr11 99455282 99455420 -22388436 - B1_Mus2 SINE Alu 0 147 10 9 1343 209 108 27 0 chr11 99455958 99455995 -22387861 + (TCC)n Simple_repeat Simple_repeat 1 38 0 9 1343 253 337 29 39 chr11 99456015 99456117 -22387739 - RSINE1 SINE B4 0 165 65 9 1343 994 273 0 4 chr11 99456165 99456397 -22387459 - B4A SINE B4 -61 231 1 9 1343 482 251 70 56 chr11 99456913 99457128 -22386728 - MTD LTR MaLR -2 417 200 9 1343 338 343 58 42 chr11 99457169 99457494 -22386362 - Lx8 LINE L1 0 7473 7173 9 1343 894 246 71 14 chr11 99457493 99457774 -22386082 + L1_Mur3 LINE L1 5216 5512 -368 9 1343 896 274 0 9 chr11 99457781 99457998 -22385858 - MTD LTR MaLR -204 215 1 9 1343 185 226 19 19 chr11 99458122 99458176 -22385680 - MIR SINE MIR -65 143 90 9 1343 599 153 8 0 chr11 99459895 99460026 -22383830 + (TA)n Simple_repeat Simple_repeat 2 133 0 9 1343 3443 114 2 10 chr11 99461155 99461659 -22382197 + Lx2 LINE L1 6498 6997 0 9 1343 648 0 0 0 chr11 99461996 99462068 -22381788 + (TC)n Simple_repeat Simple_repeat 1 72 0 9 1343 686 72 0 10 chr11 99462130 99462228 -22381628 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 9 1343 281 89 22 0 chr11 99462230 99462275 -22381581 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 9 1343 1290 80 0 0 chr11 99462277 99462453 -22381403 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 9 1343 502 221 38 15 chr11 99462505 99462638 -22381218 - B4 SINE B4 -151 141 6 9 1343 1037 220 5 0 chr11 99463078 99463287 -22380569 + B3 SINE B2 2 211 -5 9 1343 270 73 0 0 chr11 99463290 99463331 -22380525 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 9 1343 529 253 81 40 chr11 99463362 99463560 -22380296 - Lx9 LINE L1 -151 7493 7288 9 1343 689 196 84 93 chr11 99463689 99463914 -22379942 + Lx8 LINE L1 7249 7471 -2 9 1343 564 283 81 13 chr11 99464876 99465112 -22378744 - L1MA6 LINE L1 -35 6265 6014 9 1343 827 279 9 14 chr11 99465403 99465614 -22378242 - B3 SINE B2 -6 210 1 9 1343 542 244 0 34 chr11 99465810 99465929 -22377927 - PB1D10 SINE Alu -2 115 1 9 1343 873 279 46 32 chr11 99466002 99466287 -22377569 - B4A SINE B4 0 292 4 9 1343 257 258 81 0 chr11 99466661 99466723 -22377133 + ID4 SINE ID 1 67 -16 9 1343 857 245 66 0 chr11 99466669 99466865 -22376991 + ID_B1 SINE B4 15 223 -1 9 1343 913 187 9 15 chr11 99466983 99467315 -22376541 + CT-rich Low_complexity Low_complexity 1 329 0 9 1343 197 284 68 0 chr11 99467785 99467859 -22375997 + MIR SINE MIR 150 228 -34 9 1343 286 302 35 10 chr11 99467901 99468001 -22375855 + PB1D9 SINE Alu 13 114 -6 9 1343 615 246 24 6 chr11 99468029 99468101 -22375755 + B4 SINE B4 8 80 -212 9 1343 306 0 0 0 chr11 99468101 99468135 -22375721 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1343 615 246 24 6 chr11 99468135 99468230 -22375626 + B4 SINE B4 81 177 -115 9 1343 369 0 0 0 chr11 99468305 99468346 -22375510 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1343 552 15 0 0 chr11 99468969 99469034 -22374822 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1343 22 0 0 0 chr11 99469427 99469449 -22374407 + AT_rich Low_complexity Low_complexity 1 22 0 9 1343 408 280 42 0 chr11 99469635 99469753 -22374103 - ID_B1 SINE B4 -21 203 81 1 1343 342 356 0 0 chr11 99469793 99469897 -22373959 - PB1D7 SINE Alu -16 104 1 1 1343 230 321 117 19 chr11 99472146 99472308 -22371548 - MIRb SINE MIR -34 234 57 1 1343 4421 85 16 5 chr11 99473160 99473738 -22370118 + MT2B2 LTR ERVL 1 584 0 1 1343 269 252 108 0 chr11 99473780 99473860 -22369996 + ID4 SINE ID 8 94 -58 1 1343 206 186 23 0 chr11 99473903 99473946 -22369910 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 1343 234 0 0 0 chr11 99474352 99474378 -22369478 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1343 207 0 0 0 chr11 99474446 99474469 -22369387 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1343 678 148 32 24 chr11 99474473 99474598 -22369258 - B1_Mur4 SINE Alu -13 137 12 1 1343 189 0 0 0 chr11 99474642 99474663 -22369193 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1 1343 25 0 0 0 chr11 99475336 99475361 -22368495 + AT_rich Low_complexity Low_complexity 1 25 0 1 1343 428 231 194 0 chr11 99476980 99477114 -22366742 + RSINE1 SINE B4 2 161 -4 1 1343 853 263 12 153 chr11 99477417 99477834 -22366022 + MTE2a LTR MaLR 1 358 -21 1 1343 288 0 0 0 chr11 99478683 99478715 -22365141 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1343 1537 215 41 28 chr11 99479171 99479535 -22364321 + ORR1D1 LTR MaLR 6 374 0 1 1343 642 226 152 9 chr11 99480148 99480358 -22363498 + MTD LTR MaLR 149 388 -31 1 1343 213 47 22 44 chr11 99480415 99480460 -22363396 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 1 1343 331 323 28 51 chr11 99483368 99483544 -22360312 - MIR SINE MIR -43 219 48 1 1344 262 305 30 8 chr11 99484050 99484182 -22359674 + MER53 DNA hAT 59 193 0 1 1344 838 273 53 15 chr11 99484581 99484845 -22359011 - B4 SINE B4 -16 276 3 1 1344 651 87 36 55 chr11 99485630 99485740 -22358116 - B1_Mur4 SINE Alu 0 150 43 1 1344 336 153 0 0 chr11 99485742 99485827 -22358029 + CT-rich Low_complexity Low_complexity 2 86 0 1 1344 272 167 0 115 chr11 99485850 99485911 -22357945 - B1_Mur4 SINE Alu -95 55 1 1 1344 2340 112 79 0 chr11 99486921 99487261 -22356595 - ORR1B2 LTR MaLR 0 367 1 1 1344 383 313 37 7 chr11 99487661 99487796 -22356060 - B1F1 SINE Alu -10 139 1 1 1344 582 204 137 110 chr11 99488084 99488266 -22355590 - B3A SINE B2 -8 187 1 1 1344 273 286 7 118 chr11 99488285 99488420 -22355436 - B3 SINE B2 0 216 97 1 1344 246 264 0 0 chr11 99489098 99489204 -22354652 + (CAG)n Simple_repeat Simple_repeat 1 106 0 1 1344 332 243 0 0 chr11 99490337 99490407 -22353449 - RSINE1 SINE B4 -80 85 16 1 1344 423 173 0 0 chr11 99490435 99490516 -22353340 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1344 300 222 37 0 chr11 99490516 99490597 -22353259 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 1344 258 265 0 0 chr11 99490614 99490663 -22353193 + RSINE1 SINE B4 37 85 -80 1 1344 470 161 11 0 chr11 99490687 99490780 -22353076 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 1 1344 284 170 52 31 chr11 99490926 99491023 -22352833 + (TTATA)n Simple_repeat Simple_repeat 1 99 0 1 1344 384 22 0 0 chr11 99491108 99491153 -22352703 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1344 501 17 0 0 chr11 99491153 99491210 -22352646 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1344 396 0 0 0 chr11 99492514 99492558 -22351298 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1344 485 16 16 0 chr11 99492558 99492619 -22351237 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1344 291 373 11 26 chr11 99492819 99493009 -22350847 - LTR16A LTR ERVL -15 436 250 1 1344 3417 134 29 16 chr11 99493529 99494090 -22349766 - Lx4A LINE L1 0 7058 6491 1 1344 4149 91 5 2 chr11 99494094 99494667 -22349189 + Lx4A LINE L1 5587 6161 -897 1 1344 1203 201 13 4 chr11 99494706 99494936 -22348920 - Lx9 LINE L1 -409 7235 7004 1 1344 355 216 11 0 chr11 99494944 99495032 -22348824 + Lx9 LINE L1 7507 7595 -49 1 1344 315 0 0 0 chr11 99495178 99495213 -22348643 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1344 342 326 43 36 chr11 99495220 99495360 -22348496 - RSINE1 SINE B4 -22 143 3 1 1344 195 279 0 0 chr11 99495943 99496047 -22347809 + (CAG)n Simple_repeat Simple_repeat 1 104 0 1 1344 21 0 0 0 chr11 99496962 99496983 -22346873 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 232 191 0 0 chr11 99497072 99497119 -22346737 + Lx8 LINE L1 7425 7471 -2 1 1344 288 0 0 0 chr11 99498275 99498307 -22345549 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1344 198 0 0 0 chr11 99498307 99498328 -22345528 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1344 1377 326 77 31 chr11 99498376 99499117 -22344739 + Lx8 LINE L1 6697 7471 -2 1 1344 3243 177 56 2 chr11 99499421 99499993 -22343863 - RMER1B Other Other -13 1053 451 1 1344 1975 202 58 96 chr11 99500026 99500525 -22343331 - RMER1B Other Other -542 524 45 1 1344 22 56 0 0 chr11 99500822 99500858 -22342998 + AT_rich Low_complexity Low_complexity 1 36 0 2 1344 6189 68 15 11 chr11 99500928 99501840 -22342016 + RLTR13D6 LTR ERVK 1 849 -53 3 1344 909 206 67 5 chr11 99502387 99502582 -22341274 + B3 SINE B2 2 208 -8 4 1344 906 129 12 6 chr11 99502633 99502797 -22341059 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 5 1344 1287 19 0 0 chr11 99503269 99503423 -22340433 + (CA)n Simple_repeat Simple_repeat 2 155 0 6 1344 2610 43 6 18 chr11 99503518 99503814 -22340042 - L1Md_F2 LINE L1 -503 6079 5785 7 1344 1981 98 0 51 chr11 99503814 99504126 -22339730 + L1Md_F2 LINE L1 6276 6571 -11 8 1344 2610 43 6 18 chr11 99504126 99504163 -22339693 - L1Md_F2 LINE L1 -798 5784 5750 7 1344 351 273 0 22 chr11 99504951 99505086 -22338770 + (CAG)n Simple_repeat Simple_repeat 1 132 0 9 1344 4153 106 8 2 chr11 99506651 99507246 -22336610 - L1_Mus3 LINE L1 -7 6631 6033 1 1344 943 307 39 9 chr11 99507295 99507633 -22336223 + MTEb LTR MaLR 1 348 -31 1 1344 239 336 76 36 chr11 99508184 99508434 -22335422 - RLTR16 LTR ERVK -227 278 19 1 1344 459 205 107 0 chr11 99508491 99508613 -22335243 - L1MA6 LINE L1 -2 6298 6164 1 1344 513 0 0 0 chr11 99508633 99508690 -22335166 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1 1344 1126 59 0 0 chr11 99508691 99508826 -22335030 - B1_Mus2 SINE Alu -12 135 1 1 1344 362 307 66 0 chr11 99508955 99509092 -22334764 - L1MC4a LINE L1 -2031 5851 5706 1 1344 1171 211 9 0 chr11 99509298 99509521 -22334335 - URR1B DNA MER1_type 0 225 1 1 1344 526 271 0 15 chr11 99509937 99510072 -22333784 - B3 SINE B2 0 216 84 1 1344 423 0 0 0 chr11 99510173 99510220 -22333636 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1344 875 292 19 19 chr11 99510227 99510496 -22333360 - B4 SINE B4 -23 269 1 2 1344 833 139 53 0 chr11 99510650 99510801 -22333055 - B2_Mm1t SINE B2 0 193 35 2 1344 239 296 6 41 chr11 99511079 99511248 -22332608 + (CAG)n Simple_repeat Simple_repeat 1 163 0 2 1344 603 193 103 1 chr11 99512115 99512204 -22331652 - RLTR20C LTR ERVK -18 560 461 2 1344 399 73 0 0 chr11 99512204 99512259 -22331597 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1344 603 182 98 0 chr11 99512259 99512321 -22331535 - RLTR20C LTR ERVK -87 491 417 2 1344 964 197 74 74 chr11 99512313 99512625 -22331231 - RLTR20C LTR ERVK -222 312 1 2 1344 328 264 82 23 chr11 99512633 99512791 -22331065 + L1MC4 LINE L1 6934 7125 -917 2 1344 283 193 23 35 chr11 99512810 99512896 -22330960 + L1MC4 LINE L1 7226 7310 -572 2 1344 455 274 269 4 chr11 99512938 99513165 -22330691 + B4 SINE B4 2 288 -4 2 1344 357 317 130 11 chr11 99513277 99513539 -22330317 + L1MC4 LINE L1 7460 7752 -290 2 1344 207 0 0 0 chr11 99513786 99513809 -22330047 + (CAG)n Simple_repeat Simple_repeat 2 24 0 2 1344 764 234 140 11 chr11 99513817 99514089 -22329767 - RLTR28B LTR ERVL -164 317 11 2 1344 369 0 0 0 chr11 99515040 99515081 -22328775 + (GGGAGA)n Simple_repeat Simple_repeat 1 41 0 2 1344 202 55 0 53 chr11 99515329 99515367 -22328489 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1344 3049 202 18 2 chr11 99516760 99517310 -22326546 - Lx5 LINE L1 -296 6754 6196 3 1344 4793 173 57 3 chr11 99517310 99518222 -22325634 + L1_Mur2 LINE L1 4444 5404 -473 3 1344 268 298 58 116 chr11 99518275 99518334 -22325522 - Lx8 LINE L1 0 7473 7421 3 1344 792 117 12 49 chr11 99518334 99518496 -22325360 - Lx3_Mus LINE L1 -6 7003 6848 3 1344 268 298 58 116 chr11 99518496 99518694 -22325162 - Lx8 LINE L1 -53 7420 7231 3 1344 374 219 137 26 chr11 99518701 99518818 -22325038 + Lx8 LINE L1 6827 6956 -517 3 1344 366 147 0 0 chr11 99518840 99518908 -22324948 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1344 603 27 0 0 chr11 99519167 99519240 -22324616 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1344 273 283 20 29 chr11 99519457 99519559 -22324297 - Lx8 LINE L1 -2 7471 7371 3 1344 376 314 0 0 chr11 99519840 99519977 -22323879 + (CAG)n Simple_repeat Simple_repeat 2 138 0 3 1344 1198 150 14 0 chr11 99521150 99521357 -22322499 + ORR1B1 LTR MaLR 1 210 -184 4 1344 867 232 106 6 chr11 99521358 99521631 -22322225 + Lx6 LINE L1 7103 7433 -27 4 1344 509 272 23 23 chr11 99521725 99521905 -22321951 - MTD LTR MaLR -256 163 1 4 1344 663 144 0 0 chr11 99522039 99522150 -22321706 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 1344 220 67 0 82 chr11 99522761 99522810 -22321046 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1344 477 84 0 0 chr11 99522839 99522910 -22320946 - ORR1A4-int LTR MaLR -1892 71 1 4 1344 1907 144 22 9 chr11 99522910 99523233 -22320623 - ORR1A4 LTR MaLR 0 329 3 4 1344 423 0 0 0 chr11 99523576 99523623 -22320233 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1344 519 45 0 0 chr11 99523623 99523688 -22320168 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1344 818 90 199 7 chr11 99524041 99524187 -22319669 - L1_Mus4 LINE L1 -6 6630 6457 4 1344 303 335 0 0 chr11 99526793 99526966 -22316890 + (CAG)n Simple_repeat Simple_repeat 3 175 0 4 1344 906 168 52 26 chr11 99527974 99528206 -22315650 + Lx9 LINE L1 7406 7643 -1 5 1344 354 339 67 18 chr11 99529037 99529262 -22314594 + HERV16-int LTR ERVL 2611 2846 -2150 5 1344 280 242 152 11 chr11 99530051 99530143 -22313713 - MTE2a LTR MaLR -93 286 182 5 1344 333 280 85 71 chr11 99530179 99530533 -22313323 + L1MA4 LINE L1 5571 5929 -371 5 1344 210 37 0 0 chr11 99530563 99530590 -22313266 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1344 2414 71 113 11 chr11 99530885 99531239 -22312617 + RLTR10 LTR ERVK 1 390 0 5 1344 1023 45 0 0 chr11 99533113 99533245 -22310611 + B1_Mus2 SINE Alu 9 140 -7 5 1344 225 0 0 0 chr11 99533250 99533275 -22310581 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1344 667 271 77 52 chr11 99533474 99533836 -22310020 - RLTR21 LTR ERVK -5 1567 1197 5 1344 1170 228 0 0 chr11 99533840 99534090 -22309766 - RMER12B LTR ERVK -1154 250 1 5 1344 431 309 80 45 chr11 99534475 99534787 -22309069 - ORR1D1 LTR MaLR -14 360 38 6 1344 212 294 0 0 chr11 99535322 99535390 -22308466 + (CAG)n Simple_repeat Simple_repeat 2 69 0 6 1344 410 305 74 140 chr11 99537604 99537960 -22305896 - RMER12B LTR ERVK -4 1568 1243 6 1344 437 89 0 15 chr11 99537960 99538028 -22305828 + (CATA)n Simple_repeat Simple_repeat 1 67 0 6 1344 2189 273 126 63 chr11 99538028 99539296 -22304560 - RMER12B LTR ERVK -330 1242 1 6 1344 666 0 0 0 chr11 99540652 99540726 -22303130 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 6 1344 214 294 0 0 chr11 99541910 99541978 -22301878 + (CAG)n Simple_repeat Simple_repeat 2 69 0 6 1344 2595 275 105 44 chr11 99543038 99544305 -22299551 - RMER12B LTR ERVK -144 1260 1 6 1344 211 365 0 0 chr11 99546702 99546847 -22297009 + (CAG)n Simple_repeat Simple_repeat 2 146 0 6 1344 493 260 11 142 chr11 99549087 99549369 -22294487 - RLTR21 LTR ERVK -166 1406 1162 6 1344 2646 252 118 74 chr11 99549378 99550665 -22293191 - RMER12B LTR ERVK -311 1261 1 6 1344 917 69 8 0 chr11 99553662 99553792 -22290064 + (TC)n Simple_repeat Simple_repeat 2 132 0 7 1344 1144 58 0 0 chr11 99554567 99554704 -22289152 + B1_Mus2 SINE Alu 1 137 -10 7 1344 364 37 0 36 chr11 99554704 99554760 -22289096 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 1344 432 278 40 76 chr11 99554861 99555046 -22288810 - RLTR21 LTR ERVK -162 1410 1239 7 1344 270 0 0 0 chr11 99555046 99555076 -22288780 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1344 432 278 40 76 chr11 99555076 99555139 -22288717 - RLTR21 LTR ERVK -334 1238 1171 7 1344 1469 289 123 72 chr11 99555178 99556320 -22287536 - RMER12B LTR ERVK -198 1206 6 7 1344 500 330 50 30 chr11 99556720 99557023 -22286833 - ORR1D1 LTR MaLR -22 352 44 7 1344 225 294 0 0 chr11 99557564 99557632 -22286224 + (CAG)n Simple_repeat Simple_repeat 2 69 0 7 1344 1101 249 180 60 chr11 99558792 99559476 -22284380 - RMER12B LTR ERVK -406 998 233 7 1344 492 222 0 0 chr11 99559482 99559572 -22284284 - RMER12B LTR ERVK -1314 90 1 7 1344 382 358 42 36 chr11 99559950 99560257 -22283599 - ORR1D1 LTR MaLR -16 358 50 7 1344 594 0 0 0 chr11 99560263 99560329 -22283527 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 8 1344 2625 255 90 110 chr11 99563283 99564798 -22279058 - RMER12B LTR ERVK -167 1405 1 8 1344 5873 63 0 88 chr11 99564801 99565709 -22278147 - RLTR22_Mus LTR ERVK 0 1808 981 8 1344 190 243 0 91 chr11 99565763 99565779 -22278077 + L3 LINE CR1 3337 3352 -1137 8 1344 216 0 0 0 chr11 99565779 99565803 -22278053 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 8 1344 190 243 0 91 chr11 99565803 99565863 -22277993 + L3 LINE CR1 3353 3406 -1083 8 1344 230 348 0 0 chr11 99566263 99566378 -22277478 + (CAG)n Simple_repeat Simple_repeat 3 117 0 8 1344 615 27 0 0 chr11 99567719 99567792 -22276064 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 1344 1187 70 0 7 chr11 99567792 99567937 -22275919 - B1_Mm SINE Alu -3 144 1 8 1344 2076 244 94 94 chr11 99568815 99570202 -22273654 - RMER12B LTR ERVK -5 1567 1 8 1344 233 356 0 17 chr11 99571337 99571514 -22272342 + (CAG)n Simple_repeat Simple_repeat 3 176 0 8 1344 800 263 187 71 chr11 99573192 99573685 -22270171 - RMER12B LTR ERVK -187 1217 693 9 1344 1457 75 0 21 chr11 99573685 99573876 -22269980 - B2_Mm2 SINE B2 -8 187 1 9 1344 800 200 53 63 chr11 99573876 99574013 -22269843 - RMER12B LTR ERVK -712 692 428 9 1344 3153 24 0 0 chr11 99574033 99574370 -22269486 - IAPLTR1a_Mm LTR ERVK 0 337 1 9 1344 7130 30 24 6 chr11 99574370 99575207 -22268649 - IAPEz-int LTR ERVK 0 6481 5630 9 1344 24960 32 36 13 chr11 99575193 99578191 -22265665 - IAPEz-int LTR ERVK -3405 3076 8 9 1344 3153 24 0 0 chr11 99578191 99578528 -22265328 - IAPLTR1a_Mm LTR ERVK 0 337 1 9 1344 1295 269 9 82 chr11 99578534 99578960 -22264896 - RMER12B LTR ERVK -1009 395 1 9 1344 1861 70 0 4 chr11 99580517 99580747 -22263109 + L1_Mus1 LINE L1 6339 6567 0 9 1344 450 0 0 0 chr11 99582193 99582243 -22261613 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1344 1161 117 0 0 chr11 99582465 99582610 -22261246 + B1_Mus1 SINE Alu 3 147 -1 9 1344 2051 84 7 14 chr11 99582610 99582886 -22260970 + L1_Mus3 LINE L1 6365 6638 0 9 1344 554 291 72 113 chr11 99583233 99583648 -22260208 - RLTR21 LTR ERVK -4 1568 1171 9 1344 2808 261 127 75 chr11 99583648 99584898 -22258958 - RMER12B LTR ERVK -144 1260 1 9 1344 411 21 0 0 chr11 99587093 99587141 -22256715 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1344 582 75 0 0 chr11 99587141 99587220 -22256636 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1344 559 281 78 133 chr11 99587899 99588321 -22255535 - RLTR21 LTR ERVK 0 1572 1174 1 1344 640 229 0 0 chr11 99588349 99588467 -22255389 - RMER12B LTR ERVK -1277 127 10 1 1344 681 275 111 75 chr11 99588524 99589342 -22254514 + RLTR21 LTR ERVK 756 1568 -4 1 1344 212 294 0 0 chr11 99591571 99591639 -22252217 + (CTG)n Simple_repeat Simple_repeat 2 69 0 1 1344 2619 266 118 49 chr11 99592403 99593663 -22250193 + RMER12B LTR ERVK 1 1262 -310 1 1344 271 265 0 0 chr11 99593671 99593739 -22250117 + (TATG)n Simple_repeat Simple_repeat 4 71 0 1 1344 1171 225 113 63 chr11 99593849 99594247 -22249609 - RMER12B LTR ERVK -825 579 162 1 1344 250 143 0 0 chr11 99594250 99594292 -22249564 - RMER12B LTR ERVK -1359 45 4 1 1344 640 337 42 3 chr11 99594696 99594982 -22248874 - ORR1D1 LTR MaLR -28 346 50 1 1344 189 0 0 0 chr11 99596709 99596730 -22247126 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1344 2178 98 3 7 chr11 99596995 99597284 -22246572 - L1Md_F2 LINE L1 -12 6570 6283 1 1344 447 55 0 0 chr11 99597284 99597339 -22246517 + L1Md_F2 LINE L1 6227 6281 -303 1 1344 308 262 0 0 chr11 99597596 99597680 -22246176 + CT-rich Low_complexity Low_complexity 1 84 0 1 1344 1924 264 98 103 chr11 99598500 99599942 -22243914 - RMER12B LTR ERVK -156 1416 6 1 1344 247 345 82 43 chr11 99600352 99600609 -22243247 - ORR1C2 LTR MaLR -30 354 88 1 1344 198 0 0 0 chr11 99600686 99600708 -22243148 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1344 229 338 0 21 chr11 99601231 99601376 -22242480 + (CAG)n Simple_repeat Simple_repeat 2 143 0 1 1344 1165 251 184 54 chr11 99602500 99603145 -22240711 - RMER12B LTR ERVK -457 947 219 1 1344 483 261 0 0 chr11 99603137 99603229 -22240627 - RMER12B LTR ERVK -1312 92 1 1 1344 416 341 43 30 chr11 99603616 99603921 -22239935 - ORR1D1 LTR MaLR -16 358 50 1 1344 459 0 0 0 chr11 99603927 99603978 -22239878 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1344 212 294 0 0 chr11 99604494 99604562 -22239294 + (CAG)n Simple_repeat Simple_repeat 2 69 0 1 1344 710 294 78 123 chr11 99605871 99606209 -22237647 - RMER12B LTR ERVK -11 1561 1242 1 1344 264 59 0 0 chr11 99606209 99606243 -22237613 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1344 2429 288 116 60 chr11 99606243 99607505 -22236351 - RMER12B LTR ERVK -144 1260 1 1 1344 419 312 58 44 chr11 99607900 99608195 -22235661 - ORR1D1 LTR MaLR -25 349 51 1 1344 214 294 0 0 chr11 99608744 99608812 -22235044 + (CAG)n Simple_repeat Simple_repeat 2 69 0 1 1344 336 208 0 0 chr11 99610483 99610579 -22233277 + CT-rich Low_complexity Low_complexity 1 96 0 1 1344 491 274 55 128 chr11 99611381 99611843 -22232013 - RMER12B LTR ERVK -156 1416 638 1 1344 1648 227 48 10 chr11 99611859 99612251 -22231605 - RMER12B LTR ERVK -997 407 1 1 1344 513 314 91 34 chr11 99612649 99612987 -22230869 - ORR1D1 LTR MaLR -22 348 3 1 1344 478 203 47 113 chr11 99613148 99613298 -22230558 + MT2B LTR ERVL 125 264 -337 1 1344 413 258 44 99 chr11 99613173 99613199 -22230657 + B4A SINE B4 76 166 -126 1 1344 1043 67 0 7 chr11 99613199 99613334 -22230522 + B1_Mus1 SINE Alu 15 148 0 1 1344 413 258 44 99 chr11 99613334 99613354 -22230502 + B4A SINE B4 167 246 -46 1 1344 504 48 0 0 chr11 99613367 99613430 -22230426 + (GGAAA)n Simple_repeat Simple_repeat 3 65 0 1 1344 222 136 0 0 chr11 99613742 99613786 -22230070 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 1344 484 238 60 112 chr11 99613791 99614082 -22229774 - RMER12B LTR ERVK -145 1259 992 1 20 7497 62 11 4 chr11 99614163 99615100 -22228756 - L1Md_F2 LINE L1 -3 6579 5637 1 1345 1744 256 124 131 chr11 99615125 99615784 -22228072 - RMER12B LTR ERVK -454 950 229 1 1345 1002 110 0 0 chr11 99615784 99615939 -22227917 + (TTTC)n Simple_repeat Simple_repeat 3 157 0 1 1345 1744 256 124 131 chr11 99615939 99616235 -22227621 - RMER12B LTR ERVK -1176 228 1 1 1345 342 359 67 41 chr11 99616623 99616937 -22226919 - ORR1D1 LTR MaLR -16 358 37 1 1345 531 222 6 131 chr11 99618582 99618802 -22225054 - RMER12B LTR ERVK -999 405 175 1 1345 928 207 80 0 chr11 99618908 99619096 -22224760 - RMER12B LTR ERVK -1201 203 1 1 1345 2749 269 109 91 chr11 99622374 99624014 -22219842 - RMER12B LTR ERVK 0 1572 1 1 1345 501 337 57 22 chr11 99624404 99624739 -22219117 - ORR1D1 LTR MaLR -3 381 29 1 1345 1080 45 0 0 chr11 99627868 99628002 -22215854 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 1345 809 317 111 13 chr11 99628290 99628903 -22214953 + L1MA4 LINE L1 5254 5926 -374 1 1345 390 235 0 0 chr11 99628912 99629014 -22214842 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 1345 2048 100 10 10 chr11 99629169 99629462 -22214394 + ORR1A2 LTR MaLR 1 293 -34 1 1345 10320 132 70 18 chr11 99629476 99629540 -22214316 + ORR1A2-int LTR MaLR 1 56 -1907 1 1345 1480 63 0 10 chr11 99629540 99629732 -22214124 - L1Md_F3 LINE L1 -14 6570 6381 1 1345 10320 132 70 18 chr11 99629732 99631533 -22212323 + ORR1A2-int LTR MaLR 57 1963 0 1 1345 2169 116 0 0 chr11 99631543 99631846 -22212010 + ORR1A2 LTR MaLR 25 327 0 1 1345 1148 239 206 9 chr11 99632032 99632382 -22211474 + MTD LTR MaLR 1 419 0 1 1345 200 357 0 0 chr11 99633371 99633500 -22210356 + (CAG)n Simple_repeat Simple_repeat 3 131 0 1 1345 225 372 0 0 chr11 99633629 99633801 -22210055 + (CAG)n Simple_repeat Simple_repeat 3 174 0 1 1345 244 178 13 52 chr11 99635163 99635240 -22208616 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 1 1345 1620 194 16 0 chr11 99635638 99635942 -22207914 + Lx9 LINE L1 7048 7356 -288 1 1345 504 0 0 0 chr11 99635946 99636002 -22207854 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1345 1229 166 30 0 chr11 99636115 99636314 -22207542 - Lx5 LINE L1 -459 6591 6387 1 1345 1872 215 79 19 chr11 99636316 99636748 -22207108 + Lx5 LINE L1 6590 7047 -3 1 1345 1220 233 92 56 chr11 99637169 99637374 -22206482 + Lx7 LINE L1 7236 7430 -266 1 1345 215 79 26 0 chr11 99637374 99637412 -22206444 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1345 1220 233 92 56 chr11 99637412 99637541 -22206315 + Lx7 LINE L1 7431 7578 -118 1 1345 806 78 0 9 chr11 99637541 99637657 -22206199 + (GAAA)n Simple_repeat Simple_repeat 4 118 0 1 1345 1220 233 92 56 chr11 99637657 99637766 -22206090 + Lx7 LINE L1 7579 7695 -1 1 1345 324 94 0 0 chr11 99638096 99638149 -22205707 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1345 261 0 0 0 chr11 99638167 99638196 -22205660 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 1 1345 1064 100 0 22 chr11 99638197 99638307 -22205549 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1 1345 1305 83 0 0 chr11 99638307 99638487 -22205369 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1345 1064 100 0 22 chr11 99638487 99638560 -22205296 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 1 1345 261 337 87 17 chr11 99638732 99638904 -22204952 + L1M2 LINE L1 4708 4891 -1252 1 1345 2362 247 137 97 chr11 99638906 99640177 -22203679 + RMER12 LTR ERVK 1 1322 0 1 1345 315 343 0 0 chr11 99641492 99641664 -22202192 + (CAG)n Simple_repeat Simple_repeat 3 174 0 1 1345 498 17 0 0 chr11 99643777 99643836 -22200020 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1345 2243 179 57 0 chr11 99644590 99645008 -22198848 - Lx9 LINE L1 -155 7489 7048 1 1345 390 243 34 17 chr11 99645407 99645583 -22198273 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 1345 319 344 3 3 chr11 99646771 99647116 -22196740 + (CTG)n Simple_repeat Simple_repeat 1 345 0 1 1345 198 0 0 0 chr11 99647475 99647497 -22196359 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1345 528 310 155 31 chr11 99648452 99649032 -22194824 - L1MA4 LINE L1 -372 5928 5277 1 1345 687 182 74 0 chr11 99649035 99649156 -22194700 + B3 SINE B2 1 130 -86 1 1345 186 43 0 0 chr11 99649174 99649197 -22194659 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1345 348 270 39 31 chr11 99649218 99649348 -22194508 - RLTR22_Mur LTR ERVK -35 1813 1683 1 1345 4638 175 107 19 chr11 99649335 99649691 -22194165 - RMER12 LTR ERVK -178 1144 769 1 1345 414 0 0 0 chr11 99649691 99649737 -22194119 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 1 1345 4638 175 107 19 chr11 99649737 99650427 -22193429 - RMER12 LTR ERVK -554 768 6 1 1345 213 39 0 0 chr11 99650427 99650453 -22193403 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1345 951 169 0 0 chr11 99650464 99650641 -22193215 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 1345 1777 31 0 0 chr11 99650771 99650963 -22192893 - B2_Mm1t SINE B2 -1 192 1 1 1345 359 300 115 65 chr11 99651447 99651707 -22192149 - MLT1F1 LTR MaLR -29 540 268 1 1345 243 0 0 0 chr11 99651733 99651760 -22192096 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1345 461 130 0 0 chr11 99652081 99652158 -22191698 + Lx7 LINE L1 7604 7680 -16 1 1345 1095 219 87 24 chr11 99652489 99652821 -22191035 - RMER13B LTR ERVK -104 804 452 1 1345 477 0 0 0 chr11 99652822 99652875 -22190981 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1345 1969 69 0 87 chr11 99652883 99653169 -22190687 - L1_Mus2 LINE L1 0 6566 6306 1 1345 1892 180 45 51 chr11 99653169 99653544 -22190312 - RMER13B LTR ERVK -535 373 1 1 1345 236 345 6 6 chr11 99654051 99654223 -22189633 + (CAG)n Simple_repeat Simple_repeat 3 174 0 1 1345 501 79 19 38 chr11 99655194 99655299 -22188557 + (TTCTC)n Simple_repeat Simple_repeat 4 106 0 1 1345 615 243 35 43 chr11 99655479 99655711 -22188145 - CYRA11_Mm Unknown Y-chromosome -214 403 174 1 1345 1160 174 39 5 chr11 99655506 99655714 -22188142 + URR1B DNA MER1_type 11 225 0 1 1345 273 310 14 0 chr11 99656295 99656366 -22187490 + ID4 SINE ID 8 79 -4 1 1345 24 77 0 0 chr11 99657419 99657471 -22186385 + AT_rich Low_complexity Low_complexity 1 52 0 1 1345 441 0 0 0 chr11 99657835 99657884 -22185972 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 1 1345 755 75 9 0 chr11 99657884 99657991 -22185865 + (TTTTC)n Simple_repeat Simple_repeat 1 108 0 1 1345 1097 61 0 62 chr11 99657991 99658183 -22185673 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1345 1751 288 21 12 chr11 99658198 99658720 -22185136 - Lx6 LINE L1 -13 7447 6566 1 1345 192 275 83 48 chr11 99659268 99659352 -22184504 - L4 LINE RTE -433 1596 1510 1 1345 217 322 11 28 chr11 99659807 99659983 -22183873 + (CAG)n Simple_repeat Simple_repeat 3 175 0 1 1345 677 137 8 0 chr11 99660757 99660874 -22182982 + (TC)n Simple_repeat Simple_repeat 2 119 0 1 1345 1125 128 0 0 chr11 99660899 99661079 -22182777 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1345 1119 179 39 5 chr11 99661272 99661480 -22182376 + URR1B DNA MER1_type 11 225 0 1 1345 280 300 29 0 chr11 99662063 99662133 -22181723 + ID4 SINE ID 8 79 -4 1 1345 181 407 19 32 chr11 99662233 99662388 -22181468 - MER5B DNA MER1_type -21 157 5 1 1345 31 58 0 0 chr11 99663184 99663236 -22180620 + AT_rich Low_complexity Low_complexity 1 52 0 1 1345 653 0 13 0 chr11 99663614 99663691 -22180165 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 1 1345 1872 277 16 12 chr11 99663701 99664226 -22179630 - Lx6 LINE L1 -13 7447 6566 2 1345 192 275 83 48 chr11 99664752 99664836 -22179020 - L4 LINE RTE -433 1596 1510 2 1345 217 322 11 28 chr11 99665291 99665467 -22178389 + (CAG)n Simple_repeat Simple_repeat 3 175 0 2 1345 572 156 9 0 chr11 99666271 99666380 -22177476 + CT-rich Low_complexity Low_complexity 2 111 0 2 1345 219 263 0 34 chr11 99666382 99666396 -22177460 + T-rich Low_complexity Low_complexity 44 57 0 2 1345 1053 134 0 0 chr11 99666396 99666576 -22177280 + (TTC)n Simple_repeat Simple_repeat 1 224 0 2 1345 219 263 0 34 chr11 99666576 99666620 -22177236 + T-rich Low_complexity Low_complexity 1 43 0 2 1345 1119 179 39 5 chr11 99666805 99667013 -22176843 + URR1B DNA MER1_type 11 225 0 2 1345 254 300 29 0 chr11 99667596 99667666 -22176190 + ID4 SINE ID 8 79 -4 2 1345 31 58 0 0 chr11 99668717 99668769 -22175087 + AT_rich Low_complexity Low_complexity 1 52 0 2 1345 545 0 15 0 chr11 99669147 99669212 -22174644 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 2 1345 1881 277 16 12 chr11 99669222 99669747 -22174109 - Lx6 LINE L1 -13 7447 6566 2 1345 453 36 0 0 chr11 99671719 99671774 -22172082 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1345 217 143 0 51 chr11 99671775 99671788 -22172068 + polypyrimidine Low_complexity Low_complexity 44 56 0 2 1345 1179 74 17 0 chr11 99671788 99671964 -22171892 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2 1345 217 143 0 51 chr11 99671964 99672009 -22171847 + CT-rich Low_complexity Low_complexity 1 43 0 2 1345 384 239 87 0 chr11 99672184 99672276 -22171580 + URR1B DNA MER1_type 1 100 -125 2 1345 233 324 14 0 chr11 99672415 99672486 -22171370 + ID4 SINE ID 8 79 -4 2 1345 2759 129 93 10 chr11 99672538 99673032 -22170824 + RMER4B LTR ERVK 40 574 -11 2 1345 258 207 0 0 chr11 99673121 99673179 -22170677 + CT-rich Low_complexity Low_complexity 3 60 0 2 1345 1018 196 164 13 chr11 99673558 99673796 -22170060 - MTC LTR MaLR -4 417 144 2 1345 297 329 55 89 chr11 99673840 99674077 -22169779 + MLT1E1 LTR MaLR 389 617 -37 2 1345 2155 148 6 11 chr11 99674644 99674992 -22168864 + ORR1A1 LTR MaLR 1 346 0 2 1345 183 42 0 0 chr11 99677395 99677419 -22166437 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1345 243 61 0 0 chr11 99678375 99678408 -22165448 + (CTAA)n Simple_repeat Simple_repeat 3 35 0 2 1345 391 290 45 8 chr11 99678594 99678726 -22165130 + B1F1 SINE Alu 5 141 -8 2 1345 970 248 141 14 chr11 99680219 99680587 -22163269 - MTD LTR MaLR -4 415 1 2 1345 346 351 0 0 chr11 99680837 99680948 -22162908 + (CA)n Simple_repeat Simple_repeat 1 111 0 2 1345 182 123 70 0 chr11 99681101 99681158 -22162698 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1345 1472 283 42 9 chr11 99681176 99681721 -22162135 - L1M2 LINE L1 -484 5816 5254 2 1345 231 329 86 0 chr11 99681997 99682067 -22161789 + ID4_ SINE ID 7 82 -1 2 1345 357 252 17 42 chr11 99682067 99682187 -22161669 + GA-rich Low_complexity Low_complexity 1 117 0 2 1345 351 269 19 22 chr11 99682192 99682320 -22161536 + Lx8 LINE L1 5400 5585 -727 2 1345 2974 118 7 2 chr11 99682354 99682814 -22161042 - RLTR20A2 LTR ERVK -116 462 1 2 1345 256 294 145 11 chr11 99682961 99683147 -22160709 + Lx8 LINE L1 5695 5905 -1568 2 1345 4505 12 2 0 chr11 99683267 99683759 -22160097 - MT2_Mm LTR ERVL 0 493 1 2 1345 321 0 0 0 chr11 99683759 99683797 -22160059 - MERVL-int LTR ERVL 0 5485 5448 2 1345 362 167 46 35 chr11 99683797 99683884 -22159972 - ORR1A3-int LTR MaLR -1323 640 553 2 1345 20089 22 0 0 chr11 99683884 99686118 -22157738 - MERVL-int LTR ERVL -125 5360 3126 2 1345 4322 42 8 16 chr11 99686118 99687530 -22156326 + L1Md_Gf LINE L1 1 604 -5918 2 1345 36053 34 1 0 chr11 99687550 99693037 -22150819 + L1Md_T LINE L1 1 5589 -297 2 1345 9048 6 2 3 chr11 99693037 99694034 -22149822 + L1Md_T LINE L1 5590 6585 0 2 1345 180 0 0 0 chr11 99694434 99694454 -22149402 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1345 21391 12 24 0 chr11 99694454 99697523 -22146333 - MERVL-int LTR ERVL -2344 3141 1 2 1345 4505 12 2 0 chr11 99697523 99698015 -22145841 - MT2_Mm LTR ERVL 0 493 1 2 1345 580 276 82 46 chr11 99700057 99700251 -22143605 - Lx8 LINE L1 -352 7121 6921 2 1345 26 0 0 0 chr11 99700597 99700623 -22143233 + AT_rich Low_complexity Low_complexity 1 26 0 2 1345 260 216 26 18 chr11 99700743 99700856 -22143000 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 1345 1133 222 124 27 chr11 99702571 99702909 -22140947 - Lx8 LINE L1 -10 7463 7093 2 1345 616 316 190 15 chr11 99702954 99703506 -22140350 + L1M3de LINE L1 579 1076 -5577 2 1345 409 303 106 47 chr11 99703957 99704213 -22139643 + L1M3de LINE L1 1376 1646 -5007 2 1345 1486 195 102 11 chr11 99704291 99704665 -22139191 + MTD LTR MaLR 12 419 0 2 1345 450 0 0 0 chr11 99705076 99705126 -22138730 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2 1345 688 83 266 0 chr11 99705126 99705235 -22138621 - B1_Mus1 SINE Alu -9 139 2 2 1345 441 0 0 0 chr11 99705584 99705633 -22138223 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 2 1345 263 325 27 0 chr11 99705633 99705720 -22138136 - PB1D10 SINE Alu -10 110 17 2 1345 444 143 0 0 chr11 99706062 99706071 -22137785 + (TA)n Simple_repeat Simple_repeat 1 9 0 2 1345 441 0 0 0 chr11 99706071 99706120 -22137736 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1345 444 143 0 0 chr11 99706120 99706187 -22137669 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1345 1231 251 116 21 chr11 99706730 99707161 -22136695 - L1MA9 LINE L1 -18 6294 5823 2 1345 351 0 0 0 chr11 99707536 99707575 -22136281 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 1345 878 145 0 0 chr11 99709254 99709392 -22134464 + B1_Mus1 SINE Alu 6 143 -5 2 1345 548 197 136 84 chr11 99710045 99710200 -22133656 - RSINE1 SINE B4 -1 164 2 2 1345 261 0 0 0 chr11 99710367 99710396 -22133460 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1345 732 133 0 0 chr11 99710498 99710618 -22133238 + (TCC)n Simple_repeat Simple_repeat 2 121 0 2 1345 1606 276 45 48 chr11 99711005 99711246 -22132610 - L1MA6 LINE L1 -6 6294 6059 2 1345 288 77 0 0 chr11 99711246 99711285 -22132571 + (CTTA)n Simple_repeat Simple_repeat 1 39 0 2 1345 779 200 114 22 chr11 99711285 99711469 -22132387 - B3 SINE B2 -14 202 2 2 1345 1606 276 45 48 chr11 99711469 99711846 -22132010 - L1MA6 LINE L1 -242 6058 5678 2 1345 199 118 86 29 chr11 99713623 99713693 -22130163 + (TATTG)n Simple_repeat Simple_repeat 2 75 0 2 1345 367 256 128 0 chr11 99714104 99714221 -22129635 + ID_B1 SINE B4 93 224 0 2 1345 1299 115 10 5 chr11 99714904 99715097 -22128759 + B2_Mm2 SINE B2 1 194 -1 2 1345 586 242 102 175 chr11 99715828 99716243 -22127613 - MT2A LTR ERVL -88 513 1 2 1345 364 143 0 0 chr11 99716243 99716299 -22127557 - MERVL_2A-int LTR ERVL 0 5761 5706 2 1345 293 261 42 32 chr11 99716299 99716394 -22127462 - ORR1A3-int LTR MaLR -1324 639 544 2 1345 180 0 0 0 chr11 99716416 99716436 -22127420 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1345 749 281 102 80 chr11 99716436 99716799 -22127057 + Lx8 LINE L1 6857 7227 -246 2 1345 300 280 96 27 chr11 99716818 99717005 -22126851 + Lx8 LINE L1 7267 7466 -7 2 1345 994 9 0 0 chr11 99717621 99717728 -22126128 + U6 snRNA snRNA 1 107 0 2 1345 1324 37 0 0 chr11 99717728 99717889 -22125967 + L1Md_A LINE L1 6422 6582 0 2 1345 845 260 81 116 chr11 99717890 99718408 -22125448 + Lx9 LINE L1 7126 7625 -19 2 1345 210 150 0 0 chr11 99718813 99718853 -22125003 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1345 205 384 0 0 chr11 99719483 99719655 -22124201 + (CTG)n Simple_repeat Simple_repeat 1 172 0 2 1345 519 17 0 0 chr11 99720632 99720692 -22123164 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1345 201 229 0 0 chr11 99720692 99720727 -22123129 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1345 3470 200 78 6 chr11 99720727 99721382 -22122474 - RMER1B Other Other -12 1054 353 2 1345 389 222 0 0 chr11 99721383 99721464 -22122392 - RMER1B Other Other -942 124 44 2 1345 406 224 83 18 chr11 99721906 99722015 -22121841 - RSINE1 SINE B4 -39 126 11 2 1345 25 51 0 0 chr11 99722148 99722187 -22121669 + AT_rich Low_complexity Low_complexity 1 39 0 2 1345 789 152 13 58 chr11 99722335 99722489 -22121367 + B1_Mur4 SINE Alu 3 149 -1 2 1345 1384 227 44 20 chr11 99722549 99722953 -22120903 - Lx5 LINE L1 -198 6852 6604 2 1345 2411 63 0 9 chr11 99723077 99723396 -22120460 + L1Md_F2 LINE L1 6266 6581 -1 2 1345 22 35 0 0 chr11 99723399 99723428 -22120428 + AT_rich Low_complexity Low_complexity 1 29 0 2 1345 1381 123 151 0 chr11 99723509 99723761 -22120095 - RLTR11A LTR ERVK -238 290 1 2 1345 919 247 80 33 chr11 99724253 99724554 -22119302 - Lx8 LINE L1 -140 7333 7019 2 1345 368 0 0 41 chr11 99725222 99725271 -22118585 + (TAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1345 333 0 0 0 chr11 99726839 99726876 -22116980 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2 1345 257 362 7 14 chr11 99727238 99727381 -22116475 - ORR1C2 LTR MaLR -235 149 8 2 1345 645 14 0 0 chr11 99728373 99728447 -22115409 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 1345 8221 47 10 0 chr11 99728919 99730233 -22113623 + L1_Mus1 LINE L1 5241 6567 0 2 1345 581 298 6 0 chr11 99730241 99730399 -22113457 - MLT1D LTR MaLR 0 505 347 2 1345 275 252 111 9 chr11 99730484 99730592 -22113264 - MLT1D LTR MaLR -334 171 53 2 1345 1445 49 0 37 chr11 99731431 99731591 -22112265 + B2_Mm1t SINE B2 1 160 -33 2 1345 612 73 0 0 chr11 99731591 99731673 -22112183 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 2 1345 1445 49 0 37 chr11 99731673 99731702 -22112154 + B2_Mm1t SINE B2 161 183 -10 2 1345 541 264 214 0 chr11 99732022 99732200 -22111656 + B3 SINE B2 1 216 0 2 1345 620 271 39 61 chr11 99732348 99732610 -22111246 + L1PB4 LINE L1 5694 5925 -1771 2 1345 1835 144 30 30 chr11 99732686 99733015 -22110841 + ORR1A4 LTR MaLR 1 329 0 2 1345 435 259 16 49 chr11 99733583 99733705 -22110151 + RSINE1 SINE B4 48 165 0 2 1345 26 0 0 0 chr11 99733705 99733731 -22110125 + AT_rich Low_complexity Low_complexity 1 26 0 2 1345 774 272 31 22 chr11 99735989 99736218 -22107638 + Lx8 LINE L1 6876 7106 -367 2 1345 501 289 71 19 chr11 99737722 99737934 -22105922 - MLT1D LTR MaLR -7 498 276 2 1345 267 248 79 68 chr11 99738207 99738384 -22105472 + L1M5 LINE L1 5282 5460 -704 2 1345 363 318 130 44 chr11 99738385 99738756 -22105100 - ORR1E LTR MaLR -2 368 1 3 1345 378 0 0 0 chr11 99738863 99738905 -22104951 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1345 493 313 0 39 chr11 99738955 99739108 -22104748 - B4 SINE B4 -144 148 2 3 1345 276 100 0 0 chr11 99739536 99739576 -22104280 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1345 540 260 19 6 chr11 99741885 99742065 -22101791 + L1MA4A LINE L1 5705 5924 -379 3 1345 977 322 85 50 chr11 99742159 99742698 -22101158 + Lx9 LINE L1 6905 7462 -182 3 1345 270 0 0 0 chr11 99742772 99742802 -22101054 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1345 1021 228 56 11 chr11 99743174 99743440 -22100416 + B4A SINE B4 3 280 -12 3 1345 27 0 0 0 chr11 99743656 99743683 -22100173 + AT_rich Low_complexity Low_complexity 1 27 0 3 168 41998 12 2 6 chr11 99744204 99751437 -22092419 - L1Md_A LINE L1 0 6582 1 3 1346 7900 55 6 4 chr11 99751497 99753128 -22090728 - L1Md_F2 LINE L1 0 6582 4949 3 1346 783 131 23 0 chr11 99753303 99753433 -22090423 - RLTR45 LTR ERVK 0 482 350 3 1346 1162 44 0 0 chr11 99753433 99753570 -22090286 - L1Md_A LINE L1 -642 5940 5804 3 1346 1922 107 24 70 chr11 99753570 99753942 -22089914 - RLTR45 LTR ERVK -127 355 1 3 1346 489 34 0 0 chr11 99753994 99754053 -22089803 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1346 238 0 0 0 chr11 99754118 99754153 -22089703 + L1_Mus2 LINE L1 6532 6566 0 3 1346 278 256 27 144 chr11 99754482 99754628 -22089228 - MLT1A1 LTR MaLR -279 129 1 3 1346 3019 78 2 15 chr11 99754993 99755398 -22088458 + MTB LTR MaLR 1 400 0 3 1346 2895 280 74 81 chr11 99755946 99757150 -22086706 + Lx5 LINE L1 5853 7049 -1 3 1346 643 208 77 0 chr11 99757199 99757329 -22086527 - B3A SINE B2 -56 142 3 3 1346 2276 165 15 5 chr11 99757772 99758181 -22085675 + MTC LTR MaLR 1 413 -8 3 1346 22 0 0 0 chr11 99759253 99759275 -22084581 + AT_rich Low_complexity Low_complexity 1 22 0 3 1346 270 319 106 75 chr11 99759437 99759664 -22084192 - MLT1D LTR MaLR -68 437 204 3 1346 402 292 35 0 chr11 99759726 99759897 -22083959 - L1MB1 LINE L1 -100 6068 5892 3 1346 373 293 154 28 chr11 99759885 99760099 -22083757 - L1MB1 LINE L1 -383 5785 5545 3 1346 291 270 11 0 chr11 99760345 99760434 -22083422 - Lx6 LINE L1 -27 7433 7344 3 1346 342 0 0 0 chr11 99760655 99760693 -22083163 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1346 4373 205 55 31 chr11 99760693 99760708 -22083148 - Lx5 LINE L1 -14 7036 7027 3 1346 3379 30 5 8 chr11 99760708 99761105 -22082751 + MTA_Mm LTR MaLR 1 396 0 3 1346 4373 205 55 31 chr11 99761105 99762080 -22081776 - Lx5 LINE L1 -24 7026 6023 3 1346 569 162 9 0 chr11 99762080 99762191 -22081665 + CT-rich Low_complexity Low_complexity 1 112 0 3 1346 3170 137 22 6 chr11 99762197 99762703 -22081153 - L1_Mur2 LINE L1 -286 5591 5078 3 1346 3754 120 0 24 chr11 99762703 99763299 -22080557 + L1_Mur2 LINE L1 4507 5088 -789 3 1346 402 291 134 24 chr11 99763387 99763640 -22080216 - RMER15 LTR ERVL -15 560 280 3 1346 337 245 47 17 chr11 99764658 99764774 -22079082 + L1M3 LINE L1 2651 2774 -3372 3 1346 327 49 0 0 chr11 99764860 99764901 -22078955 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1346 449 309 109 60 chr11 99764937 99765202 -22078654 - B4 SINE B4 -11 281 4 3 1346 343 301 86 52 chr11 99765205 99765496 -22078360 + L1M3 LINE L1 2869 3169 -2974 3 1346 374 297 148 5 chr11 99765496 99765719 -22078137 + L1M3 LINE L1 4020 4274 -1866 3 1346 321 183 33 0 chr11 99765750 99765810 -22078046 + B3A SINE B2 3 64 -134 3 1346 423 56 0 0 chr11 99765847 99765901 -22077955 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1346 360 296 67 36 chr11 99766078 99766271 -22077585 - L1M3 LINE L1 -484 5684 5486 3 1346 414 0 0 0 chr11 99766926 99766972 -22076884 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1346 708 296 32 39 chr11 99766972 99767369 -22076487 + L1M3 LINE L1 5263 5663 -493 3 1346 432 0 0 0 chr11 99767423 99767471 -22076385 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1346 187 103 25 25 chr11 99767551 99767591 -22076265 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1346 3169 37 8 0 chr11 99770261 99770642 -22073214 + L1Md_T LINE L1 6199 6582 0 3 1346 6152 39 3 1 chr11 99771127 99771857 -22071999 + L1Md_F2 LINE L1 5849 6579 -3 3 1346 760 243 32 5 chr11 99772063 99772249 -22071607 + B3 SINE B2 2 192 -24 3 1346 657 276 68 10 chr11 99772264 99772469 -22071387 + RMER1B Other Other 166 382 -684 3 1346 528 286 30 71 chr11 99772511 99772778 -22071078 + RMER1C Other Other 1071 1326 -16 3 1346 1377 113 19 14 chr11 99772851 99773066 -22070790 + Lx5 LINE L1 5761 5976 -1074 3 1346 1165 216 5 0 chr11 99773060 99773268 -22070588 - Lx5 LINE L1 -602 6448 6240 3 1346 261 121 167 0 chr11 99773270 99773336 -22070520 + RMER6B LTR ERVK 3 79 -382 3 1346 2619 124 35 19 chr11 99773338 99773766 -22070090 + MYSERV6-int LTR ERVK 8524 8958 -1 3 1346 1051 180 374 26 chr11 99773766 99774108 -22069748 + RMER6B LTR ERVK 1 461 0 3 1346 337 118 98 0 chr11 99774108 99774159 -22069697 - Lx5 LINE L1 -805 6245 6190 3 1346 361 349 21 38 chr11 99777038 99777276 -22066580 - L1MB1 LINE L1 -43 6125 5892 3 1346 395 265 25 17 chr11 99777276 99777395 -22066461 - L1M2 LINE L1 -517 5780 5661 3 1346 753 183 8 0 chr11 99778322 99778442 -22065414 - ETnERV2-int LTR ERVK -210 7196 7076 3 1346 352 127 14 113 chr11 99778442 99778513 -22065343 - RLTR17 LTR ERVK -524 168 105 3 1346 624 323 6 6 chr11 99778637 99778796 -22065060 + B3 SINE B2 1 159 -57 3 1346 19025 178 42 22 chr11 99778830 99782436 -22061420 + Lx5 LINE L1 1163 4798 -1079 3 1346 414 0 0 0 chr11 99782436 99782482 -22061374 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1346 19025 178 43 21 chr11 99782482 99782922 -22060934 + Lx5 LINE L1 4799 5295 -582 3 1346 36543 40 6 3 chr11 99782927 99788123 -22055733 + L1Md_T LINE L1 285 5589 -297 3 1346 9095 25 0 0 chr11 99788123 99789107 -22054749 + L1Md_T LINE L1 5590 6573 -12 3 1346 6523 187 37 24 chr11 99789107 99790855 -22053001 + Lx5 LINE L1 5278 7050 0 3 1346 263 270 24 22 chr11 99790948 99791075 -22052781 + B3A SINE B2 3 183 -15 3 1346 251 287 73 57 chr11 99791208 99791366 -22052490 - L1MB1 LINE L1 -441 5727 5564 3 1346 3113 71 15 20 chr11 99791366 99791768 -22052088 - MTB LTR MaLR 0 400 1 3 1346 251 287 73 57 chr11 99791768 99791786 -22052070 - L1MB1 LINE L1 -605 5563 5548 3 1346 272 240 38 19 chr11 99792987 99793093 -22050763 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1346 258 209 34 34 chr11 99793094 99793183 -22050673 - Lx9 LINE L1 -1307 6337 6249 3 1346 237 180 0 0 chr11 99793185 99793235 -22050621 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1346 283 65 0 0 chr11 99794657 99794703 -22049153 - L1Md_T LINE L1 0 6582 6537 3 1346 4115 35 0 0 chr11 99794703 99795159 -22048697 - L1Md_T LINE L1 -2 6580 6125 3 1346 335 286 31 154 chr11 99795356 99795421 -22048435 + L1M2 LINE L1 5374 5433 -751 3 1346 1340 20 0 13 chr11 99795421 99795570 -22048286 + B1_Mm SINE Alu 1 147 0 3 1346 664 250 20 69 chr11 99795570 99795829 -22048027 + L1M2 LINE L1 5434 5662 -638 3 1346 201 121 0 0 chr11 99797000 99797033 -22046823 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1346 260 345 40 23 chr11 99798644 99798819 -22045037 - L1MA9 LINE L1 -228 6084 5907 3 1346 3391 88 29 35 chr11 99798820 99799305 -22044551 - RLTR45 LTR ERVK 0 482 1 3 1346 328 319 17 8 chr11 99799321 99799441 -22044415 - L1M1 LINE L1 -517 5783 5663 3 1346 26 0 0 0 chr11 99799720 99799746 -22044110 + AT_rich Low_complexity Low_complexity 1 26 0 3 1346 209 283 0 0 chr11 99799795 99799848 -22044008 + (TTTG)n Simple_repeat Simple_repeat 3 55 0 3 1346 1015 232 23 14 chr11 99799923 99800137 -22043719 + B3 SINE B2 1 216 0 3 1346 684 0 0 0 chr11 99800774 99800850 -22043006 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1346 665 214 54 0 chr11 99800850 99800962 -22042894 - B1_Mur2 SINE Alu -30 119 2 3 1346 244 308 21 103 chr11 99800962 99801078 -22042778 - MT2B2 LTR ERVL -326 258 155 3 1346 27 0 0 0 chr11 99801459 99801486 -22042370 + AT_rich Low_complexity Low_complexity 1 27 0 3 1346 2371 122 36 95 chr11 99801495 99801967 -22041889 - Lx3B LINE L1 -4 6969 6526 3 1346 923 216 26 5 chr11 99802259 99802454 -22041402 - B3 SINE B2 -17 199 1 3 1346 1272 348 38 54 chr11 99802871 99803613 -22040243 - Lx8 LINE L1 -2 7471 6742 3 1346 986 137 0 0 chr11 99803615 99803754 -22040102 - B1_Mur4 SINE Alu -5 145 7 3 1346 457 158 8 150 chr11 99803655 99803782 -22040074 - MT2B LTR ERVL -344 257 149 3 1346 810 311 73 56 chr11 99803797 99804152 -22039704 - Lx8 LINE L1 -775 6698 6338 3 1346 353 191 101 56 chr11 99804159 99804248 -22039608 + B4 SINE B4 200 292 0 3 1346 232 328 121 0 chr11 99804283 99804399 -22039457 + L1MA4 LINE L1 4861 4990 -1153 3 1346 3197 276 152 32 chr11 99804418 99805715 -22038141 + Lx8 LINE L1 5875 7327 -146 3 1346 250 26 51 0 chr11 99805827 99805866 -22037990 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1346 755 241 14 14 chr11 99805875 99806022 -22037834 + B1_Mur1 SINE Alu 3 149 0 3 1346 425 103 15 0 chr11 99806032 99806100 -22037756 + (GGGAGA)n Simple_repeat Simple_repeat 2 70 0 3 1346 221 303 0 0 chr11 99806100 99806166 -22037690 + A-rich Low_complexity Low_complexity 3 68 0 3 1346 1080 309 41 50 chr11 99806171 99807060 -22036796 + L1MA4 LINE L1 5025 5906 -394 3 1346 26 0 0 0 chr11 99807305 99807331 -22036525 + AT_rich Low_complexity Low_complexity 1 26 0 3 1346 1228 56 14 0 chr11 99807492 99807636 -22036220 + B1_Mus1 SINE Alu 2 147 -1 3 1346 459 0 0 0 chr11 99807636 99807687 -22036169 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 1346 532 166 33 55 chr11 99807688 99807847 -22036009 - B2_Mm2 SINE B2 -13 182 34 3 1346 613 195 44 0 chr11 99808169 99808282 -22035574 - ETnERV2-int LTR ERVK -214 7192 7075 3 1346 827 58 0 0 chr11 99808282 99808386 -22035470 - B2_Mm2 SINE B2 -90 105 2 3 1346 306 0 0 0 chr11 99811002 99811036 -22032820 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 1346 29 0 0 0 chr11 99811134 99811163 -22032693 + AT_rich Low_complexity Low_complexity 1 29 0 3 1346 180 135 0 0 chr11 99811331 99811368 -22032488 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1346 180 77 0 0 chr11 99811368 99811394 -22032462 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1346 390 252 80 15 chr11 99811419 99811556 -22032300 - RMER15 LTR ERVL -25 550 405 3 1346 300 303 205 26 chr11 99811867 99812057 -22031799 + HAL1-3A_ME LINE L1 1975 2198 -660 3 1346 372 283 139 0 chr11 99812076 99812242 -22031614 - L1MB1 LINE L1 -87 6081 5893 3 1346 347 305 62 67 chr11 99812637 99812816 -22031040 + Lx8 LINE L1 7158 7335 -138 4 1346 1016 139 0 11 chr11 99813267 99813449 -22030407 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1346 513 0 0 0 chr11 99813449 99813506 -22030350 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 4 1346 958 131 23 0 chr11 99813510 99813685 -22030171 + GA-rich Low_complexity Low_complexity 2 180 0 4 1346 1559 286 70 124 chr11 99813689 99813977 -22029879 - L1M2 LINE L1 -2088 4055 3772 4 1346 592 176 92 9 chr11 99813977 99814086 -22029770 - PB1D9 SINE Alu -2 118 1 4 1346 1559 286 70 124 chr11 99814086 99815335 -22028521 - L1M2 LINE L1 -2372 3771 2601 4 1346 1115 299 77 36 chr11 99815433 99816104 -22027752 + L1M2 LINE L1 4047 4744 -1399 4 1346 1273 68 0 0 chr11 99816104 99816252 -22027604 + B1_Mus1 SINE Alu 1 148 0 4 1346 1115 299 77 36 chr11 99816252 99816350 -22027506 + L1M2 LINE L1 4745 4847 -1296 4 1346 301 270 30 82 chr11 99817763 99817917 -22025939 - L1MB1 LINE L1 -9 6180 6034 4 1346 1392 234 19 42 chr11 99817939 99818300 -22025556 + L1_Rod LINE L1 3614 3966 -1881 4 1346 239 291 20 28 chr11 99818306 99818416 -22025440 + L1M2 LINE L1 5501 5657 -655 4 1346 410 235 36 22 chr11 99818435 99818574 -22025282 - L1M3 LINE L1 -579 5610 5470 4 1346 234 0 0 0 chr11 99818805 99818831 -22025025 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 4 1346 697 302 80 8 chr11 99819795 99820045 -22023811 + Lx8 LINE L1 7019 7286 -187 4 1346 255 344 76 53 chr11 99820103 99820235 -22023621 + LTR31 LTR ERV1 114 248 -371 4 1346 296 245 257 7 chr11 99820260 99820400 -22023456 + Lx8 LINE L1 7290 7464 -9 4 1346 599 351 142 32 chr11 99820510 99820911 -22022945 - LTR31 LTR ERV1 -48 571 127 4 1346 1022 251 23 5 chr11 99821596 99821816 -22022040 - ID_B1 SINE B4 0 224 1 4 1346 342 115 0 0 chr11 99822631 99822683 -22021173 + (ATG)n Simple_repeat Simple_repeat 3 54 0 4 1346 3546 162 30 6 chr11 99823257 99823921 -22019935 + RMER6A LTR ERVK 1 756 0 4 1346 975 271 120 29 chr11 99823995 99824337 -22019519 + MTD LTR MaLR 1 373 -46 4 1346 184 256 0 44 chr11 99824836 99824881 -22018975 + L4 LINE RTE 622 664 -1365 4 1346 189 267 0 0 chr11 99824995 99825040 -22018816 - MIR SINE MIR -141 121 77 4 1346 226 274 110 102 chr11 99825261 99825379 -22018477 - L2a LINE L2 -9 3417 3260 4 1346 1535 227 27 70 chr11 99825432 99825802 -22018054 - ORR1E LTR MaLR 0 359 6 4 1346 680 228 27 14 chr11 99826239 99826386 -22017470 + B1F2 SINE Alu 1 149 0 4 1346 1244 57 0 0 chr11 99826663 99826804 -22017052 + B1_Mm SINE Alu 1 141 -6 4 1346 909 74 0 0 chr11 99826806 99826928 -22016928 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 4 1346 1051 112 12 0 chr11 99826928 99827098 -22016758 + (GGGA)n Simple_repeat Simple_repeat 3 174 0 4 1346 296 371 146 0 chr11 99827589 99827767 -22016089 - MamRep605 Unknown Unknown -73 803 600 4 1346 216 0 0 0 chr11 99828380 99828404 -22015452 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1346 392 82 16 0 chr11 99828405 99828466 -22015390 + (GGGAGA)n Simple_repeat Simple_repeat 3 64 0 4 1346 737 196 8 0 chr11 99828470 99828730 -22015126 + (TG)n Simple_repeat Simple_repeat 1 262 0 4 1346 1287 61 0 0 chr11 99829936 99830083 -22013773 + B1_Mus2 SINE Alu 1 147 0 4 1346 234 0 0 0 chr11 99830083 99830109 -22013747 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1346 659 196 50 21 chr11 99830120 99830261 -22013595 + B1F1 SINE Alu 3 147 -2 4 1346 216 0 0 0 chr11 99830392 99830416 -22013440 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 4 1346 514 291 51 3 chr11 99831370 99831550 -22012306 + MLT1F2 LTR MaLR 371 567 -2 4 1346 450 53 0 0 chr11 99831583 99831640 -22012216 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1346 724 309 84 15 chr11 99831651 99831924 -22011932 - B4 SINE B4 0 292 1 4 1346 315 280 165 8 chr11 99832247 99832380 -22011476 + HAL1-3A_ME LINE L1 2285 2438 -420 4 1346 349 214 34 56 chr11 99832788 99832877 -22010979 + B1F SINE Alu 26 112 -37 4 1346 319 295 13 13 chr11 99832907 99832986 -22010870 + ID4 SINE ID 2 80 -3 4 1346 348 318 13 38 chr11 99833277 99833434 -22010422 + L1M2 LINE L1 4784 4936 -1207 4 1346 441 0 0 0 chr11 99833443 99833492 -22010364 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 4 1346 339 44 0 0 chr11 99833543 99833588 -22010268 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 4 1346 223 265 20 0 chr11 99833870 99833919 -22009937 - RSINE1 SINE B4 -57 108 59 4 1346 274 241 17 0 chr11 99833913 99833971 -22009885 + RSINE1 SINE B4 107 165 0 4 1346 257 273 107 67 chr11 99833969 99834118 -22009738 + RLTR25B LTR ERVK 338 492 -536 4 1346 497 175 102 10 chr11 99834036 99834134 -22009722 + PB1D9 SINE Alu 14 120 0 4 1346 1448 106 23 14 chr11 99834376 99834597 -22009259 - Lx2 LINE L1 0 6997 6775 4 1346 4204 94 127 5 chr11 99834595 99835234 -22008622 - Lx2 LINE L1 -352 6645 5929 4 1346 8285 70 28 2 chr11 99835236 99835575 -22008281 - L1VL4 LINE L1 -1500 2059 1724 4 1346 234 0 0 0 chr11 99835575 99835601 -22008255 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1346 8285 74 42 1 chr11 99835601 99837050 -22006806 - L1VL4 LINE L1 -1836 1723 213 4 1346 1120 102 0 0 chr11 99837146 99837293 -22006563 - B1_Mm SINE Alu 0 147 1 4 1346 737 182 16 0 chr11 99838043 99838169 -22005687 + B1_Mur3 SINE Alu 11 138 -11 4 1346 628 267 62 20 chr11 99838306 99838501 -22005355 - ID_B1 SINE B4 -19 205 3 4 1346 246 258 116 0 chr11 99838516 99838604 -22005252 - B1F SINE Alu -7 113 17 4 1346 576 289 7 0 chr11 99841292 99841434 -22002422 + B1F SINE Alu 1 143 -6 4 1346 3814 143 44 5 chr11 99842140 99842758 -22001098 - RLTR26 LTR ERVK 0 642 1 4 1346 406 315 90 6 chr11 99843122 99843288 -22000568 + B4A SINE B4 1 180 -112 4 1346 249 119 0 0 chr11 99843396 99843438 -22000418 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1346 40 0 0 0 chr11 99843514 99843554 -22000302 + AT_rich Low_complexity Low_complexity 1 40 0 4 1346 267 221 0 0 chr11 99843644 99843730 -22000126 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 1346 250 324 117 27 chr11 99844203 99844314 -21999542 + MER20 DNA MER1_type 98 218 -1 4 1346 187 140 137 20 chr11 99844847 99844898 -21998958 + L3 LINE CR1 2107 2163 -2326 4 1346 364 288 7 41 chr11 99845089 99845234 -21998622 + GA-rich Low_complexity Low_complexity 2 141 0 4 1346 280 189 46 19 chr11 99845255 99845363 -21998493 + GA-rich Low_complexity Low_complexity 3 113 0 4 1346 240 248 16 16 chr11 99845393 99845516 -21998340 + GA-rich Low_complexity Low_complexity 3 125 0 4 1346 360 261 0 0 chr11 99845668 99845798 -21998058 + GA-rich Low_complexity Low_complexity 3 132 0 4 1346 312 336 46 33 chr11 99845817 99845968 -21997888 + HAL1-3A_ME LINE L1 2292 2444 -414 4 1346 229 275 30 81 chr11 99848426 99848525 -21995331 - MIRb SINE MIR -83 185 92 4 1346 213 288 53 53 chr11 99848589 99848721 -21995135 - B2_Mm2 SINE B2 -18 177 46 4 1346 499 269 62 14 chr11 99848611 99848753 -21995103 - RSINE1 SINE B4 0 165 12 4 1346 725 260 7 0 chr11 99849111 99849265 -21994591 + RSINE1 SINE B4 9 163 -2 4 1346 659 181 62 0 chr11 99849298 99849442 -21994414 - Lx2B LINE L1 -5 6995 6843 4 1346 325 344 47 8 chr11 99851275 99851404 -21992452 + L2a LINE L2 3293 3426 0 4 1346 492 297 91 109 chr11 99851790 99852003 -21991853 + L1ME1 LINE L1 5601 5815 -364 4 1346 632 266 102 55 chr11 99852003 99852277 -21991579 + B4 SINE B4 2 288 -4 4 1346 492 297 91 109 chr11 99852277 99852321 -21991535 + L1ME1 LINE L1 5816 5828 -351 4 1346 225 0 0 0 chr11 99852321 99852346 -21991510 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1346 459 35 0 0 chr11 99852346 99852402 -21991454 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1346 492 297 91 109 chr11 99852402 99852702 -21991154 + L1ME1 LINE L1 5829 6149 -30 4 1346 409 48 0 61 chr11 99852987 99853053 -21990803 + B2_Mm1a SINE B2 127 188 -5 4 1346 310 156 69 40 chr11 99853077 99853251 -21990605 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1346 531 0 0 0 chr11 99853281 99853340 -21990516 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 4 1346 541 258 47 0 chr11 99853345 99853473 -21990383 + B1_Mur1 SINE Alu 2 135 -14 4 1346 223 164 16 32 chr11 99853670 99853733 -21990123 + A-rich Low_complexity Low_complexity 1 62 0 4 1346 247 234 276 24 chr11 99853817 99853848 -21990008 + ID_B1 SINE B4 64 221 -2 4 1346 412 242 105 0 chr11 99853848 99853943 -21989913 + PB1 SINE Alu 21 125 -2 4 1346 296 295 0 25 chr11 99853956 99854036 -21989820 + ID4_ SINE ID 5 82 -1 4 1346 301 319 0 0 chr11 99854975 99855141 -21988715 + (CCG)n Simple_repeat Simple_repeat 3 168 0 4 1346 215 204 0 0 chr11 99855130 99855174 -21988682 + (CAG)n Simple_repeat Simple_repeat 3 46 0 4 1346 400 232 15 33 chr11 99856052 99856669 -21987187 + GA-rich Low_complexity Low_complexity 1 605 0 4 1346 968 236 14 19 chr11 99856718 99856934 -21986922 + B3 SINE B2 2 216 0 4 1346 975 197 0 22 chr11 99857727 99857909 -21985947 - URR1A DNA MER1_type -1 225 48 4 1346 180 0 0 0 chr11 99858607 99858627 -21985229 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1346 546 154 35 0 chr11 99858640 99858809 -21985047 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 4 1346 311 276 29 39 chr11 99859095 99859197 -21984659 + MIR SINE MIR 100 200 -62 4 1346 1967 212 8 0 chr11 99859198 99859576 -21984280 + RLTR14 LTR ERV1 2 382 0 4 1346 291 255 0 0 chr11 99859655 99859761 -21984095 + (TG)n Simple_repeat Simple_repeat 2 107 0 4 1346 460 313 90 58 chr11 99861521 99861833 -21982023 - L1MC LINE L1 -2081 5801 5480 4 1346 1182 37 0 0 chr11 99862256 99862391 -21981465 - B1_Mus2 SINE Alu -12 135 1 4 1346 1365 92 16 0 chr11 99862398 99862582 -21981274 - B2_Mm2 SINE B2 -8 187 1 4 1346 510 181 91 147 chr11 99862598 99862883 -21980973 - Lx7 LINE L1 -9 7687 7419 4 1346 1435 228 44 93 chr11 99862885 99863358 -21980498 - RMER4A LTR ERVK 0 466 17 4 1346 2533 159 87 93 chr11 99863369 99863930 -21979926 - Lx7 LINE L1 -276 7420 6863 4 1346 442 233 0 0 chr11 99863930 99864016 -21979840 + 4.5SRNA scRNA scRNA 9 94 0 4 1346 29 0 0 0 chr11 99864095 99864124 -21979732 + AT_rich Low_complexity Low_complexity 1 29 0 4 1346 180 77 0 0 chr11 99864146 99864172 -21979684 + (TGG)n Simple_repeat Simple_repeat 1 26 0 5 1346 183 80 0 0 chr11 99864196 99864221 -21979635 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1346 1213 27 0 33 chr11 99864221 99864372 -21979484 - B1_Mus2 SINE Alu 0 147 2 5 1346 439 299 9 0 chr11 99864372 99864479 -21979377 - RSINE1 SINE B4 -46 119 12 5 1346 289 311 0 0 chr11 99864458 99864532 -21979324 - ID_B1 SINE B4 -70 154 81 5 1346 1147 178 37 33 chr11 99864562 99864777 -21979079 + B3 SINE B2 1 216 0 5 1346 24 32 0 0 chr11 99864826 99864857 -21978999 + AT_rich Low_complexity Low_complexity 1 31 0 5 1346 338 310 170 38 chr11 99864919 99865261 -21978595 - L1MC LINE L1 -783 5363 4977 4 1346 752 329 78 57 chr11 99865357 99865647 -21978209 + Lx8 LINE L1 6827 7113 -360 5 1346 757 223 146 5 chr11 99865647 99865832 -21978024 + B3 SINE B2 1 211 -5 5 1346 752 329 78 57 chr11 99865832 99865982 -21977874 + Lx8 LINE L1 7114 7262 -211 5 1346 522 103 0 0 chr11 99865982 99866060 -21977796 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1346 752 329 78 57 chr11 99866060 99866250 -21977606 + Lx8 LINE L1 7263 7471 -2 5 1346 267 309 163 23 chr11 99866510 99866639 -21977217 - MIRb SINE MIR -117 151 3 5 1346 357 24 0 0 chr11 99866969 99867011 -21976845 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1346 300 284 18 97 chr11 99867036 99867149 -21976707 + MER3 DNA MER1_type 86 189 -20 5 1346 319 328 121 71 chr11 99867173 99867537 -21976319 + L1MEd LINE L1 21 402 -5717 5 1346 878 217 33 19 chr11 99868006 99868217 -21975639 + B3 SINE B2 1 214 -2 5 1346 218 194 0 16 chr11 99868294 99868357 -21975499 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1346 304 283 98 24 chr11 99869161 99869284 -21974572 - HAL1-3A_ME LINE L1 -445 2413 2282 5 1346 226 286 0 0 chr11 99869284 99869333 -21974523 + polypyrimidine Low_complexity Low_complexity 2 50 0 5 1346 699 297 32 41 chr11 99869461 99869679 -21974177 - ID_B1 SINE B4 -1 223 8 5 1346 648 315 42 35 chr11 99870193 99870482 -21973374 - B4A SINE B4 0 292 2 5 1346 900 278 65 15 chr11 99871708 99871971 -21971885 + B4A SINE B4 1 276 -16 5 1346 244 123 40 27 chr11 99871997 99872072 -21971784 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1346 411 38 0 0 chr11 99873527 99873580 -21970276 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 1346 1307 161 9 30 chr11 99874552 99874782 -21969074 - URR1B DNA MER1_type 0 225 1 5 1347 290 26 26 0 chr11 99877949 99877988 -21965868 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1347 198 321 28 84 chr11 99878142 99878285 -21965571 - MIRb SINE MIR -7 261 127 5 1347 226 306 143 75 chr11 99878787 99878994 -21964862 - L2 LINE L2 -415 3004 2784 5 1347 272 61 61 0 chr11 99878994 99879043 -21964813 + (CAGAGA)n Simple_repeat Simple_repeat 6 57 0 5 1347 226 306 143 75 chr11 99879043 99879114 -21964742 - L2 LINE L2 -636 2783 2707 5 1347 1166 266 24 31 chr11 99879377 99879664 -21964192 + B4A SINE B4 8 292 0 5 1347 345 82 0 0 chr11 99879664 99879713 -21964143 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1347 991 335 55 23 chr11 99880680 99881028 -21962828 + MTE2b LTR MaLR 1 359 -20 5 1347 425 285 51 20 chr11 99881046 99881243 -21962613 + L1MB8 LINE L1 4550 4752 -1394 5 1347 252 296 19 12 chr11 99881244 99881389 -21962467 + L1MB8 LINE L1 4858 5002 -1144 5 1347 230 250 159 0 chr11 99881407 99881495 -21962361 + PB1 SINE Alu 15 116 -11 5 1347 920 177 0 13 chr11 99881568 99881717 -21962139 + B1_Mur2 SINE Alu 2 148 -1 5 1347 225 94 0 0 chr11 99881717 99881749 -21962107 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1347 1157 88 0 0 chr11 99881800 99881947 -21961909 + B1_Mus2 SINE Alu 1 147 0 5 1347 762 289 0 0 chr11 99881960 99882126 -21961730 + B3A SINE B2 1 166 -32 5 1347 237 83 0 0 chr11 99882134 99882170 -21961686 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1347 687 302 78 73 chr11 99882207 99882749 -21961107 + L1MB8 LINE L1 5137 5675 -503 5 1347 590 279 7 0 chr11 99882749 99882896 -21960960 + B1F SINE Alu 1 148 -1 5 1347 760 302 55 25 chr11 99882899 99883174 -21960682 + B4A SINE B4 2 284 -8 5 1347 1341 229 103 31 chr11 99883300 99883722 -21960134 + RMER16 LTR ERVK 1 533 0 5 1347 301 231 19 26 chr11 99883815 99883924 -21959932 + L1MB8 LINE L1 5827 5935 -248 5 1347 447 151 92 11 chr11 99884411 99884498 -21959358 + RLTR20B2 LTR ERVK 1 94 -466 5 1347 299 113 19 0 chr11 99886450 99886503 -21957353 + (GGGAGA)n Simple_repeat Simple_repeat 3 56 0 5 1347 184 303 42 92 chr11 99889421 99889541 -21954315 + L2c LINE L2 3272 3385 -2 5 1347 403 299 142 36 chr11 99889663 99889916 -21953940 + B4 SINE B4 1 280 -12 5 1347 275 65 0 21 chr11 99889932 99889979 -21953877 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1347 489 17 0 0 chr11 99890120 99890178 -21953678 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1347 834 118 0 0 chr11 99890195 99890356 -21953500 + (TG)n Simple_repeat Simple_repeat 2 162 0 5 1347 479 123 12 0 chr11 99892474 99892555 -21951301 + (TCC)n Simple_repeat Simple_repeat 1 82 0 5 1347 438 310 53 44 chr11 99892593 99892799 -21951057 - MARNA DNA Mariner -181 405 198 5 1347 21 0 0 0 chr11 99893028 99893049 -21950807 + AT_rich Low_complexity Low_complexity 1 21 0 5 1347 333 0 0 0 chr11 99893262 99893299 -21950557 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1347 26 30 0 0 chr11 99893346 99893379 -21950477 + AT_rich Low_complexity Low_complexity 1 33 0 5 1347 384 307 25 56 chr11 99894140 99894302 -21949554 - RSINE1 SINE B4 -6 159 3 5 1347 252 0 0 0 chr11 99894419 99894447 -21949409 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1347 766 222 40 28 chr11 99895011 99895187 -21948669 + B3 SINE B2 39 216 0 5 1347 1231 280 148 12 chr11 99895236 99895662 -21948194 + MLT2B1 LTR ERVL 1 484 -36 5 1347 649 213 35 0 chr11 99896690 99896831 -21947025 + B1_Mur2 SINE Alu 1 146 -3 5 1347 2172 190 47 20 chr11 99897436 99898003 -21945853 - RMER6A LTR ERVK -98 592 1 5 1347 192 40 0 0 chr11 99899913 99899938 -21943918 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1347 208 227 0 0 chr11 99900487 99900531 -21943325 + G-rich Low_complexity Low_complexity 4 47 0 5 1347 219 324 13 66 chr11 99900910 99900986 -21942870 + L2c LINE L2 3264 3335 -52 5 1347 405 0 0 0 chr11 99903457 99903502 -21940354 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 5 1347 402 69 0 0 chr11 99903671 99903729 -21940127 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1347 227 386 13 25 chr11 99903772 99903929 -21939927 - MIRc SINE MIR 0 268 114 5 1347 213 342 175 0 chr11 99904985 99905099 -21938757 + MIRb SINE MIR 117 250 -18 5 1347 482 207 8 59 chr11 99905108 99905143 -21938713 - MLT1D LTR MaLR 0 505 472 5 1347 3238 129 92 20 chr11 99905143 99905689 -21938167 - RMER4B LTR ERVK 0 585 1 5 1347 482 230 20 67 chr11 99905689 99905810 -21938046 - MLT1D LTR MaLR -34 593 394 5 1347 745 258 19 0 chr11 99905849 99906004 -21937852 + RSINE1 SINE B4 8 165 0 5 1347 467 206 184 7 chr11 99906038 99906185 -21937671 + L1M4 LINE L1 4989 5161 -985 5 1347 919 252 29 0 chr11 99906212 99906418 -21937438 + B3 SINE B2 5 216 0 5 1347 249 347 0 13 chr11 99906462 99906538 -21937318 + ID4 SINE ID 5 79 -4 5 1347 776 267 89 40 chr11 99906540 99906720 -21937136 + L1M4 LINE L1 5190 5374 -772 5 1347 738 0 0 0 chr11 99906720 99906802 -21937054 + (GAA)n Simple_repeat Simple_repeat 1 82 0 5 1347 776 246 101 35 chr11 99906802 99907000 -21936856 + L1M4 LINE L1 5375 5582 -598 5 1347 186 128 0 0 chr11 99907603 99907642 -21936214 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 1347 300 138 0 0 chr11 99909296 99909361 -21934495 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1347 923 125 0 28 chr11 99910180 99910361 -21933495 + GA-rich Low_complexity Low_complexity 3 178 0 5 1347 360 0 0 0 chr11 99912214 99912254 -21931602 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1347 432 0 0 0 chr11 99912256 99912304 -21931552 + (TTGG)n Simple_repeat Simple_repeat 4 51 0 5 1347 270 283 0 0 chr11 99912728 99912788 -21931068 + ID4 SINE ID 23 82 -1 5 1347 206 340 39 20 chr11 99915218 99915320 -21928536 - MIRm SINE MIR -9 267 164 5 1347 1153 64 0 0 chr11 99915374 99915515 -21928341 + B1_Mus2 SINE Alu 1 141 -6 5 1347 189 0 0 0 chr11 99915516 99915537 -21928319 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1347 333 0 0 0 chr11 99915666 99915703 -21928153 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1347 378 0 0 0 chr11 99915703 99915744 -21928112 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1347 1384 126 51 9 chr11 99916332 99916548 -21927308 + URR1B DNA MER1_type 1 225 0 5 1347 541 380 20 40 chr11 99916623 99916870 -21926986 + MIR SINE MIR 8 249 -13 5 1347 234 0 0 0 chr11 99916968 99916994 -21926862 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1347 507 297 13 7 chr11 99918376 99918525 -21925331 - MER5A1 DNA MER1_type -8 158 9 5 1347 202 310 17 0 chr11 99918573 99918631 -21925225 + MIRc SINE MIR 20 78 -190 5 1347 522 270 131 12 chr11 99919782 99920026 -21923830 + Lx9 LINE L1 7343 7615 -29 5 1347 747 282 33 5 chr11 99920305 99920515 -21923341 - B3 SINE B2 0 216 1 5 1347 1028 287 69 37 chr11 99920797 99921283 -21922573 - L1MA8 LINE L1 -353 5938 5364 5 1347 243 146 0 0 chr11 99921503 99921544 -21922312 + (CTG)n Simple_repeat Simple_repeat 1 41 0 5 1347 1111 68 7 27 chr11 99921579 99921729 -21922127 - B1_Mus1 SINE Alu 0 148 2 5 1347 227 263 25 62 chr11 99922015 99922096 -21921760 - MIRm SINE MIR 0 276 199 5 1347 283 250 7 73 chr11 99922268 99922314 -21921542 + ORR1B1-int LTR MaLR 613 648 -861 5 1347 1164 55 0 7 chr11 99922314 99922461 -21921395 + B1_Mus1 SINE Alu 3 148 0 5 1347 271 337 0 0 chr11 99922885 99922968 -21920888 + ID4_ SINE ID 1 83 0 5 1347 270 0 0 0 chr11 99923262 99923292 -21920564 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1347 243 0 0 0 chr11 99923306 99923333 -21920523 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1347 976 162 30 30 chr11 99923471 99923668 -21920188 + B3 SINE B2 6 202 -14 5 1347 207 69 0 0 chr11 99923673 99923702 -21920154 + (CAT)n Simple_repeat Simple_repeat 2 30 0 6 1347 371 294 0 12 chr11 99923721 99923833 -21920023 - MIRb SINE MIR -144 124 10 6 1347 546 264 8 0 chr11 99924212 99924337 -21919519 + B1F1 SINE Alu 9 134 -15 6 1347 371 198 43 12 chr11 99925132 99925296 -21918560 + (CAGAGA)n Simple_repeat Simple_repeat 4 172 0 6 1347 721 191 43 92 chr11 99925944 99926129 -21917727 + B2_Mm2 SINE B2 2 177 -18 6 1347 302 160 60 0 chr11 99926133 99926183 -21917673 - HAL1-3A_ME LINE L1 -831 2027 1975 6 1347 189 107 0 0 chr11 99926205 99926233 -21917623 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 6 1347 1481 273 123 51 chr11 99926352 99927001 -21916855 - Lx8 LINE L1 0 7473 6778 6 1347 291 113 0 0 chr11 99927026 99927079 -21916777 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 6 1347 563 24 0 45 chr11 99927575 99927664 -21916192 + (TCTCC)n Simple_repeat Simple_repeat 1 85 0 6 1347 1250 181 15 0 chr11 99929441 99929646 -21914210 + B3 SINE B2 1 208 -8 6 1347 882 223 36 116 chr11 99930042 99930371 -21913485 - Lx9 LINE L1 -15 7629 7327 6 1347 847 261 64 14 chr11 99930368 99930586 -21913270 + Lx9 LINE L1 7094 7322 -322 6 1347 567 0 0 0 chr11 99930871 99930934 -21912922 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 6 1347 288 0 0 0 chr11 99931647 99931679 -21912177 + (ATTG)n Simple_repeat Simple_repeat 3 34 0 6 1347 733 216 19 8 chr11 99931689 99931869 -21911987 - B3 SINE B2 -7 191 5 6 1347 304 321 18 27 chr11 99931940 99932052 -21911804 + MTD LTR MaLR 5 115 -304 6 1347 453 277 27 0 chr11 99932240 99932352 -21911504 - PB1D10 SINE Alu -1 116 2 6 1347 339 371 55 14 chr11 99932863 99933008 -21910848 + L1M5 LINE L1 5414 5564 -560 6 1347 843 126 18 9 chr11 99933456 99933675 -21910181 + CT-rich Low_complexity Low_complexity 1 220 0 6 1347 339 321 80 29 chr11 99933910 99934048 -21909808 - MER63B DNA AcHobo -18 418 274 6 1347 423 331 78 0 chr11 99934581 99934723 -21909133 + MER5A DNA MER1_type 2 154 -35 6 1347 254 296 45 0 chr11 99935293 99935381 -21908475 + MER46C DNA MER2_type 127 218 -120 6 1347 1627 240 58 14 chr11 99936930 99937289 -21906567 - MTEa LTR MaLR 0 379 5 6 1347 352 284 42 17 chr11 99937440 99937558 -21906298 - MER58A DNA MER1_type -55 169 49 6 1347 290 300 148 34 chr11 99937945 99938121 -21905735 - MIRb SINE MIR -61 207 12 6 1347 244 310 69 0 chr11 99938310 99938397 -21905459 - B1_Mur3 SINE Alu -55 94 2 6 1347 205 333 31 39 chr11 99939514 99939642 -21904214 + MIR3 SINE MIR 60 186 -22 6 1347 286 331 80 53 chr11 99939662 99939850 -21904006 + MER3 DNA MER1_type 11 203 -6 6 1347 270 371 30 48 chr11 99940765 99940932 -21902924 + MIR SINE MIR 84 247 -15 6 1347 233 292 70 4 chr11 99940934 99941019 -21902837 + B1F SINE Alu 11 98 -51 6 1347 329 299 11 0 chr11 99941346 99941433 -21902423 + MIR SINE MIR 73 160 -102 6 1347 239 109 0 68 chr11 99941444 99941503 -21902353 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1347 1064 226 0 14 chr11 99941831 99942038 -21901818 + B3 SINE B2 3 206 -10 6 1347 343 345 70 43 chr11 99943429 99943686 -21900170 + Charlie8 DNA MER1_type 1 264 -2164 6 1347 328 281 209 59 chr11 99943820 99944049 -21899807 + B4A SINE B4 2 270 -22 6 1347 276 30 0 0 chr11 99944049 99944082 -21899774 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 1347 328 281 209 59 chr11 99944082 99944105 -21899751 + B4A SINE B4 271 292 0 6 1347 227 250 0 40 chr11 99944105 99944205 -21899651 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1347 540 30 0 0 chr11 99944258 99944324 -21899532 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1347 181 402 49 0 chr11 99944554 99944656 -21899200 - L2c LINE L2 -5 3382 3276 6 1347 216 337 0 24 chr11 99945527 99945612 -21898244 - MIRm SINE MIR -138 138 56 6 1347 276 351 26 18 chr11 99945662 99945775 -21898081 - MER5B DNA MER1_type -32 146 33 6 1347 225 0 0 0 chr11 99947297 99947322 -21896534 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1347 269 369 75 29 chr11 99947457 99947630 -21896226 - MIRb SINE MIR -73 195 15 6 1347 858 20 0 0 chr11 99948110 99948210 -21895646 + (GAA)n Simple_repeat Simple_repeat 2 101 0 6 1347 686 243 75 153 chr11 99948222 99948543 -21895313 - MTE2a LTR MaLR 0 379 84 6 1347 245 300 33 0 chr11 99948530 99948620 -21895236 + MTD LTR MaLR 28 120 -299 6 1347 272 314 76 39 chr11 99948714 99948921 -21894935 - MIRb SINE MIR -11 251 35 6 1347 630 248 27 7 chr11 99950564 99950710 -21893146 - MTE2b LTR MaLR -32 347 199 6 1347 263 333 32 0 chr11 99950765 99950858 -21892998 + MER5B DNA MER1_type 11 106 -72 6 1347 241 192 0 52 chr11 99950875 99950952 -21892904 + T-rich Low_complexity Low_complexity 4 76 0 6 1347 191 259 37 0 chr11 99950959 99951013 -21892843 + MER5B DNA MER1_type 123 178 0 6 1347 745 219 36 46 chr11 99951279 99951475 -21892381 - B3A SINE B2 -4 194 1 6 1347 284 336 46 53 chr11 99951658 99951809 -21892047 - MIRc SINE MIR -93 175 26 6 1347 1197 73 0 0 chr11 99951876 99952054 -21891802 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 6 1347 217 170 21 21 chr11 99952164 99952212 -21891644 + L2b LINE L2 3328 3375 0 6 1347 850 290 24 48 chr11 99953075 99953325 -21890531 + B4 SINE B4 18 261 -31 6 1347 387 0 0 0 chr11 99955113 99955156 -21888700 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1347 552 299 6 17 chr11 99955640 99955820 -21888036 + C-rich Low_complexity Low_complexity 2 179 0 6 1347 204 360 23 53 chr11 99956727 99956859 -21886997 - MIR3 SINE MIR -47 161 34 6 1347 351 65 0 0 chr11 99959886 99959932 -21883924 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1347 291 202 0 0 chr11 99960334 99960443 -21883413 + (TG)n Simple_repeat Simple_repeat 1 109 0 6 1347 380 309 94 0 chr11 99965145 99965294 -21878562 + MIR SINE MIR 76 238 -24 6 1347 376 313 79 13 chr11 99966033 99966185 -21877671 + MIRb SINE MIR 39 200 -68 6 1347 401 279 92 11 chr11 99967367 99967567 -21876289 + Lx9 LINE L1 5722 5963 -1681 6 1347 390 245 130 48 chr11 99967794 99967908 -21875948 + RSINE1 SINE B4 3 130 -35 6 1347 248 0 31 0 chr11 99967908 99967940 -21875916 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1347 390 245 130 48 chr11 99967940 99967971 -21875885 + RSINE1 SINE B4 131 159 -6 6 1347 212 186 23 0 chr11 99967992 99968035 -21875821 + GA-rich Low_complexity Low_complexity 5 48 0 6 1347 446 302 6 58 chr11 99968067 99968239 -21875617 + RSINE1 SINE B4 3 165 0 6 1347 187 404 55 12 chr11 99968492 99968655 -21875201 + MIRc SINE MIR 32 201 -67 6 1347 270 376 26 0 chr11 99969476 99969593 -21874263 - MER20 DNA MER1_type -1 218 99 6 1347 195 42 0 0 chr11 99969756 99969780 -21874076 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 6 1347 184 291 116 0 chr11 99969783 99969869 -21873987 - L2a LINE L2 -16 3410 3315 6 1347 253 317 129 14 chr11 99970213 99970360 -21873496 + MIR3 SINE MIR 36 199 -9 6 1347 189 74 0 0 chr11 99970727 99970754 -21873102 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1347 1248 175 0 18 chr11 99971109 99971336 -21872520 - URR1B DNA MER1_type -2 223 1 6 1347 257 276 53 0 chr11 99972361 99972437 -21871419 - MER53 DNA hAT -89 104 25 6 1347 2425 158 73 12 chr11 99976534 99977029 -21866827 - RLTR11A LTR ERVK 0 528 4 6 1347 28 0 0 0 chr11 99977175 99977203 -21866653 + AT_rich Low_complexity Low_complexity 1 28 0 6 1347 242 157 86 17 chr11 99977589 99977706 -21866150 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 6 1347 233 324 0 0 chr11 99982540 99982651 -21861205 + (CCA)n Simple_repeat Simple_repeat 1 111 0 6 1347 811 266 9 0 chr11 99983443 99983657 -21860199 + B3 SINE B2 1 216 0 6 1347 310 291 26 43 chr11 99983813 99983928 -21859928 - RSINE1 SINE B4 0 165 53 6 1347 232 330 77 0 chr11 99984307 99984398 -21859458 + MER20 DNA MER1_type 28 125 -94 6 1347 619 252 92 19 chr11 99985774 99985980 -21857876 - ID_B1 SINE B4 0 224 4 6 1347 658 339 124 101 chr11 99986149 99986973 -21856883 + MER21B LTR ERV1 1 843 -20 6 1347 312 325 83 0 chr11 99987614 99987734 -21856122 - MIRb SINE MIR -40 228 99 6 1347 782 298 9 5 chr11 99987753 99987969 -21855887 + ID_B1 SINE B4 2 218 -6 6 1347 563 307 48 44 chr11 99988022 99988271 -21855585 + MER21B LTR ERV1 464 713 -150 6 1347 810 276 15 0 chr11 99988374 99988570 -21855286 - ID_B1 SINE B4 -23 201 3 6 1347 801 114 0 0 chr11 99988581 99988704 -21855152 + (TTGG)n Simple_repeat Simple_repeat 1 123 0 6 1347 331 310 16 8 chr11 99989547 99989688 -21854168 + MIRb SINE MIR 29 170 -106 6 1347 257 227 66 13 chr11 99990281 99990357 -21853499 - MIRm SINE MIR -92 184 105 6 1347 339 244 133 0 chr11 99990710 99990800 -21853056 + ID_B1 SINE B4 88 189 -35 6 1347 720 43 0 0 chr11 99990805 99990897 -21852959 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1347 593 254 23 0 chr11 99990973 99991103 -21852753 - RSINE1 SINE B4 -29 136 4 6 1347 403 317 40 67 chr11 99991640 99991863 -21851993 + MIRb SINE MIR 23 239 -29 6 1347 182 312 0 40 chr11 99992333 99992383 -21851473 - L2b LINE L2 -203 3172 3125 6 1347 186 189 0 0 chr11 99993398 99993435 -21850421 + (CTG)n Simple_repeat Simple_repeat 2 38 0 6 1347 257 300 0 0 chr11 99996896 99996996 -21846860 + (CCA)n Simple_repeat Simple_repeat 1 100 0 6 1347 862 279 60 15 chr11 99999392 99999658 -21844198 + B4A SINE B4 1 278 -14 6 1347 1046 128 0 6 chr11 99999661 99999834 -21844022 + (GGAA)n Simple_repeat Simple_repeat 3 174 0 6 1347 274 296 86 12 chr11 100001266 100001398 -21842458 + MIRb SINE MIR 39 178 -90 1 1347 315 250 14 0 chr11 100001530 100001602 -21842254 + B4A SINE B4 23 95 -197 2 1347 482 314 116 8 chr11 100001602 100001852 -21842004 + B4A SINE B4 1 277 -15 3 1347 1407 79 5 0 chr11 100004135 100004324 -21839532 + B2_Mm1a SINE B2 2 191 -2 4 1347 737 122 26 9 chr11 100004336 100004452 -21839404 + PB1D9 SINE Alu 3 120 0 5 1347 497 88 12 0 chr11 100004475 100004555 -21839301 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 6 1347 591 250 0 0 chr11 100004567 100004679 -21839177 + B3 SINE B2 1 112 -104 7 1347 231 88 0 0 chr11 100004718 100004752 -21839104 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 8 1347 459 0 0 0 chr11 100005070 100005121 -21838735 + (GGTTG)n Simple_repeat Simple_repeat 5 55 0 9 1347 875 101 54 8 chr11 100005164 100005294 -21838562 - B1_Mur3 SINE Alu -9 140 5 1 1347 336 266 26 52 chr11 100005310 100005425 -21838431 - PB1D7 SINE Alu -8 112 1 1 1347 351 0 0 0 chr11 100005977 100006016 -21837840 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 1347 335 245 186 0 chr11 100006046 100006148 -21837708 - ID_B1 SINE B4 -17 207 87 1 1348 212 241 36 18 chr11 100008429 100008484 -21835372 + MIR SINE MIR 93 148 -60 1 1348 575 233 0 6 chr11 100008620 100008797 -21835059 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1348 271 242 0 48 chr11 100008813 100008939 -21834917 + (CA)n Simple_repeat Simple_repeat 2 121 0 1 1348 497 58 14 0 chr11 100010031 100010100 -21833756 + (GGA)n Simple_repeat Simple_repeat 2 71 0 1 1348 224 304 29 19 chr11 100010100 100010204 -21833652 + MIR SINE MIR 158 262 0 1 1348 180 276 68 17 chr11 100010384 100010443 -21833413 - MIRb SINE MIR -142 126 65 1 1348 310 290 207 33 chr11 100010758 100010908 -21832948 - MIRb SINE MIR -58 210 35 1 1348 225 158 0 26 chr11 100011399 100011438 -21832418 + B1_Mus2 SINE Alu 10 47 -100 1 1348 376 241 0 17 chr11 100011456 100011574 -21832282 + GA-rich Low_complexity Low_complexity 3 118 0 2 1348 726 324 28 0 chr11 100011989 100012205 -21831651 - ID_B1 SINE B4 0 224 3 2 1348 1012 248 46 94 chr11 100012859 100012924 -21830932 + B4 SINE B4 1 67 -225 2 1348 1395 258 39 17 chr11 100012924 100013286 -21830570 + ORR1D2 LTR MaLR 1 370 0 2 1348 1012 248 46 94 chr11 100013286 100013449 -21830407 + B4 SINE B4 68 226 -66 2 1348 569 27 13 0 chr11 100013449 100013524 -21830332 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 2 1348 1012 248 46 94 chr11 100013524 100013601 -21830255 + B4 SINE B4 227 291 -1 2 1348 897 206 71 57 chr11 100014352 100014509 -21829347 + B3 SINE B2 1 158 -58 2 1348 2257 53 250 0 chr11 100014509 100014829 -21829027 + MTB LTR MaLR 1 400 0 2 1348 897 206 71 57 chr11 100014829 100014882 -21828974 + B3 SINE B2 159 214 -2 2 1348 194 150 25 0 chr11 100015407 100015447 -21828409 + GA-rich Low_complexity Low_complexity 1 41 0 2 1348 260 0 0 54 chr11 100015607 100015644 -21828212 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1348 1232 41 7 0 chr11 100015648 100015795 -21828061 - B1_Mus1 SINE Alu 0 148 1 2 1348 316 103 35 0 chr11 100016234 100016292 -21827564 + (TCTCCC)n Simple_repeat Simple_repeat 5 64 0 3 1348 561 55 0 0 chr11 100016294 100016367 -21827489 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1348 261 340 110 38 chr11 100016757 100017020 -21826836 - L2a LINE L2 -163 3212 2931 3 1348 399 349 0 0 chr11 100018080 100018209 -21825647 + (CA)n Simple_repeat Simple_repeat 2 130 0 3 1348 257 291 0 16 chr11 100018299 100018481 -21825375 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1348 448 306 7 13 chr11 100018511 100018660 -21825196 + (CATA)n Simple_repeat Simple_repeat 3 150 0 3 1348 357 62 0 0 chr11 100018673 100018721 -21825135 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1348 304 245 11 179 chr11 100019754 100019933 -21823923 + MT2B LTR ERVL 91 239 -362 3 1348 722 189 16 0 chr11 100019858 100019980 -21823876 + B1_Mur2 SINE Alu 10 133 -16 3 1348 288 0 0 0 chr11 100019980 100020012 -21823844 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 3 1348 567 0 0 0 chr11 100020014 100020077 -21823779 + (AATAG)n Simple_repeat Simple_repeat 3 65 0 4 1348 1136 215 96 82 chr11 100020142 100020821 -21823035 - RLTR40 LTR ERVK -4 813 1 4 1348 2724 143 43 38 chr11 100020822 100021329 -21822527 - RLTR40 LTR ERVK -307 510 1 4 1348 507 229 9 9 chr11 100021402 100021508 -21822348 - PB1D10 SINE Alu -10 107 2 4 1348 658 351 58 46 chr11 100021809 100021902 -21821954 - LTR40a LTR ERVL -23 496 400 4 1348 614 267 15 0 chr11 100021902 100022033 -21821823 + B1F SINE Alu 3 135 -14 4 1348 658 351 58 46 chr11 100022033 100022267 -21821589 - LTR40a LTR ERVL -120 399 166 4 1348 332 292 29 14 chr11 100022959 100023098 -21820758 + L1MC LINE L1 5292 5432 -2450 4 1348 222 362 28 19 chr11 100023132 100023239 -21820617 + PB1D10 SINE Alu 3 110 -7 4 1348 961 146 14 0 chr11 100023254 100023398 -21820458 + B1_Mur4 SINE Alu 5 150 0 4 1348 523 254 158 0 chr11 100023567 100023732 -21820124 + B3A SINE B2 2 192 -6 4 1348 1160 66 0 0 chr11 100023768 100023905 -21819951 - B1_Mus1 SINE Alu -10 138 2 5 1348 719 250 0 0 chr11 100024000 100024136 -21819720 - RSINE1 SINE B4 -22 143 8 5 1348 345 185 0 0 chr11 100024175 100024240 -21819616 + L1MC LINE L1 5670 5734 -2148 4 1348 202 211 16 66 chr11 100024803 100024864 -21818992 - L2b LINE L2 -29 3346 3289 5 1348 765 210 14 7 chr11 100024994 100025133 -21818723 - RSINE1 SINE B4 -23 142 3 5 1348 381 291 18 0 chr11 100025413 100025523 -21818333 - PB1D10 SINE Alu -5 112 1 5 1348 441 0 0 0 chr11 100026052 100026101 -21817755 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1348 389 217 124 8 chr11 100026101 100026222 -21817634 + MIRb SINE MIR 124 258 -10 5 1348 701 102 9 0 chr11 100026317 100026425 -21817431 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 1348 345 193 98 142 chr11 100027244 100027420 -21816436 - MLT1D LTR MaLR -115 390 213 5 1348 620 172 34 8 chr11 100027420 100027537 -21816319 + PB1D7 SINE Alu 1 120 0 5 1348 345 193 98 142 chr11 100027537 100027565 -21816291 - MLT1D LTR MaLR -293 212 195 5 1348 479 278 122 30 chr11 100027884 100028114 -21815742 + MLT1D LTR MaLR 82 332 -173 6 1348 1288 258 67 20 chr11 100028115 100028314 -21815542 - MTEa LTR MaLR 0 379 181 6 1348 2449 152 8 0 chr11 100028314 100028690 -21815166 - RLTR14 LTR ERV1 -2 380 2 6 1348 1288 258 67 20 chr11 100028690 100028846 -21815010 - MTEa LTR MaLR -199 180 7 6 1348 299 284 38 118 chr11 100028942 100029079 -21814777 + PB1D10 SINE Alu 6 136 -13 6 1348 304 274 28 19 chr11 100029974 100030082 -21813774 - MIRb SINE MIR -39 229 121 6 1348 241 285 11 179 chr11 100031928 100032112 -21811744 + RLTR25A LTR ERVK 426 578 -525 6 1348 894 125 0 0 chr11 100032021 100032149 -21811707 + B1_Mus1 SINE Alu 16 143 -5 6 1348 801 47 0 0 chr11 100032518 100032624 -21811232 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 1348 600 14 0 0 chr11 100032722 100032791 -21811065 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 6 1348 249 286 73 29 chr11 100033785 100033922 -21809934 - MER103 DNA DNA -2 164 22 6 1348 206 338 15 22 chr11 100033951 100034087 -21809769 + (TG)n Simple_repeat Simple_repeat 2 136 0 7 1348 439 288 23 31 chr11 100034093 100034222 -21809634 - B4A SINE B4 0 292 165 7 1348 879 141 2 29 chr11 100034465 100034611 -21809245 + B1_Mur1 SINE Alu 1 143 -6 7 1348 541 304 52 37 chr11 100034741 100034763 -21809093 - B3A SINE B2 -4 194 176 7 1348 465 19 0 0 chr11 100034763 100034817 -21809039 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1348 601 276 61 19 chr11 100034817 100034985 -21808871 - B3 SINE B2 -23 175 1 7 1348 348 189 0 0 chr11 100035429 100035503 -21808353 + GA-rich Low_complexity Low_complexity 3 76 0 7 1348 264 254 13 53 chr11 100035504 100035579 -21808277 + B4 SINE B4 156 227 -65 7 1348 693 68 0 0 chr11 100035589 100035677 -21808179 + B2_Mm2 SINE B2 5 92 -103 7 1348 244 323 86 54 chr11 100036766 100037044 -21806812 + L2b LINE L2 2916 3202 -173 7 1348 582 54 0 0 chr11 100037539 100037613 -21806243 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 7 1348 601 259 0 15 chr11 100038119 100038252 -21805604 - ID_B1 SINE B4 0 224 94 8 1348 231 331 37 97 chr11 100038601 100038735 -21805121 + MIRb SINE MIR 138 263 -5 8 1348 515 328 97 31 chr11 100038807 100039128 -21804728 + MLT1N2 LTR MaLR 81 422 -140 8 1348 189 94 0 0 chr11 100039395 100039427 -21804429 + (TTGTG)n Simple_repeat Simple_repeat 2 33 0 8 1348 194 340 10 58 chr11 100039441 100039544 -21804312 + L2 LINE L2 2597 2694 -725 8 1348 564 140 0 0 chr11 100039571 100039678 -21804178 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 8 1348 195 386 83 16 chr11 100039983 100040175 -21803681 + L2 LINE L2 2865 3069 -350 8 1348 657 237 123 25 chr11 100040803 100041006 -21802850 + ID_B1 SINE B4 1 223 -1 8 1348 721 236 0 28 chr11 100041256 100041400 -21802456 + RSINE1 SINE B4 3 142 -23 8 1348 305 47 0 23 chr11 100041401 100041445 -21802411 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1348 246 62 0 0 chr11 100041447 100041479 -21802377 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 8 1348 526 231 0 18 chr11 100041604 100041714 -21802142 + PB1D10 SINE Alu 1 108 -9 9 1348 1503 138 4 4 chr11 100042385 100042611 -21801245 - URR1A DNA MER1_type 0 226 1 9 1348 291 255 8 131 chr11 100042621 100042743 -21801113 + MT2B LTR ERVL 147 253 -348 9 1348 708 225 7 0 chr11 100042636 100042774 -21801082 + ID_B1 SINE B4 71 209 -15 9 1348 184 263 119 95 chr11 100043056 100043182 -21800674 + L3 LINE CR1 880 1008 -3481 9 1348 410 261 26 43 chr11 100043214 100043330 -21800526 - MTE2a LTR MaLR -108 271 158 9 1348 960 168 9 0 chr11 100043315 100043494 -21800362 - ORR1C1 LTR MaLR -12 372 194 9 1348 753 222 72 127 chr11 100043483 100043742 -21800114 - RLTR15 LTR ERVK -17 342 115 9 1348 597 28 0 0 chr11 100043742 100043813 -21800043 + (TC)n Simple_repeat Simple_repeat 2 72 0 9 1348 753 222 72 127 chr11 100043813 100043915 -21799941 - RLTR15 LTR ERVK -245 114 1 9 1348 971 148 86 125 chr11 100043915 100043957 -21799899 - ORR1C2 LTR MaLR -142 242 181 9 1348 201 74 0 0 chr11 100043957 100043984 -21799872 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1348 971 148 86 125 chr11 100043984 100044171 -21799685 - ORR1C2 LTR MaLR -204 180 23 9 1348 302 234 271 0 chr11 100044676 100044783 -21799073 + B4 SINE B4 146 281 -11 1 1348 1741 142 122 91 chr11 100045165 100045354 -21798502 - RMER10B LTR ERVL 0 398 196 1 1348 216 0 0 0 chr11 100045354 100045378 -21798478 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1348 1741 142 122 91 chr11 100045378 100045574 -21798282 - RMER10B LTR ERVL -203 195 1 1 1348 464 280 55 20 chr11 100045902 100046048 -21797808 + MLT1H LTR MaLR 6 156 -393 1 1348 2230 128 50 56 chr11 100046281 100046677 -21797179 - ORR1B1 LTR MaLR 0 394 1 1 1348 1042 102 7 26 chr11 100046788 100046939 -21796917 - B1_Mus1 SINE Alu 0 148 1 1 1348 1874 126 86 0 chr11 100047074 100047375 -21796481 - IAPEY3_LTR LTR ERVK -5 327 1 1 1348 280 177 47 31 chr11 100047380 100047444 -21796412 + PB1D10 SINE Alu 21 85 -32 1 1348 278 258 45 0 chr11 100047449 100047515 -21796341 + ID4_ SINE ID 2 70 -13 1 1348 768 275 33 22 chr11 100047534 100047716 -21796140 + B3A SINE B2 1 184 -14 1 1348 610 313 60 78 chr11 100047784 100048068 -21795788 - MTEa LTR MaLR -99 280 2 1 1348 931 237 28 19 chr11 100048882 100049093 -21794763 - B3 SINE B2 0 216 4 1 1348 301 386 0 0 chr11 100049743 100049896 -21793960 + C-rich Low_complexity Low_complexity 1 153 0 1 1348 356 383 0 0 chr11 100049968 100050196 -21793660 + C-rich Low_complexity Low_complexity 1 228 0 1 1348 366 391 0 0 chr11 100050205 100050471 -21793385 + C-rich Low_complexity Low_complexity 1 266 0 1 1348 241 423 30 6 chr11 100053125 100053289 -21790567 - L2c LINE L2 -197 3190 3023 1 1348 315 122 0 0 chr11 100053439 100053488 -21790368 + (TGGG)n Simple_repeat Simple_repeat 4 52 0 1 1348 275 297 0 13 chr11 100053848 100053923 -21789933 + GA-rich Low_complexity Low_complexity 3 76 0 1 1348 310 272 0 0 chr11 100054142 100054245 -21789611 + (CCA)n Simple_repeat Simple_repeat 1 103 0 1 1348 674 187 7 0 chr11 100055357 100055507 -21788349 + (TG)n Simple_repeat Simple_repeat 2 152 0 1 1348 611 229 6 0 chr11 100055539 100055714 -21788142 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1348 846 213 66 108 chr11 100055714 100056019 -21787837 - B4A SINE B4 0 292 1 1 1348 228 311 73 32 chr11 100056176 100056299 -21787557 + MIR SINE MIR 13 140 -122 1 1348 25 31 0 0 chr11 100056484 100056516 -21787340 + AT_rich Low_complexity Low_complexity 1 32 0 1 1348 294 339 37 66 chr11 100056546 100056682 -21787174 - RSINE1 SINE B4 -15 150 19 1 1348 343 165 16 78 chr11 100056815 100057006 -21786850 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1348 411 146 51 68 chr11 100057007 100057184 -21786672 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 1 1348 304 172 44 59 chr11 100057792 100057860 -21785996 + PB1D10 SINE Alu 51 117 0 1 1348 238 290 87 0 chr11 100058769 100058838 -21785018 - ID_B1 SINE B4 -55 169 95 1 1348 269 369 7 13 chr11 100059208 100059359 -21784497 + C-rich Low_complexity Low_complexity 1 150 0 1 1348 899 256 157 4 chr11 100060522 100060757 -21783099 + B4A SINE B4 18 288 -4 1 1348 201 74 0 0 chr11 100060800 100060827 -21783029 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1348 238 336 154 8 chr11 100062925 100063048 -21780808 - MIRb SINE MIR -72 196 56 1 1348 305 213 89 96 chr11 100063121 100063256 -21780600 - MIRb SINE MIR -20 248 115 1 1348 1159 148 70 14 chr11 100063276 100063489 -21780367 + URR1B DNA MER1_type 1 225 0 1 1348 1187 96 0 0 chr11 100063519 100063676 -21780180 + B2_Mm2 SINE B2 3 159 -36 1 1348 789 41 0 0 chr11 100063676 100063773 -21780083 + (GAAA)n Simple_repeat Simple_repeat 3 99 0 1 1348 575 248 58 19 chr11 100063985 100064141 -21779715 + RSINE1 SINE B4 4 165 0 1 1348 26 0 0 0 chr11 100064152 100064178 -21779678 + AT_rich Low_complexity Low_complexity 1 26 0 1 1348 187 224 102 0 chr11 100064186 100064235 -21779621 + L2a LINE L2 3366 3419 -7 1 1348 199 82 82 0 chr11 100065086 100065135 -21778721 + T-rich Low_complexity Low_complexity 2 54 0 1 1348 235 292 30 15 chr11 100066778 100066844 -21777012 + MER5A DNA MER1_type 95 161 -28 1 1348 226 312 35 39 chr11 100067895 100068031 -21775825 + MIR SINE MIR 47 186 -90 1 1348 303 173 0 0 chr11 100068425 100068506 -21775350 + (CCA)n Simple_repeat Simple_repeat 1 81 0 1 1348 288 77 0 0 chr11 100069661 100069700 -21774156 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1348 289 197 8 52 chr11 100070678 100070812 -21773044 + CT-rich Low_complexity Low_complexity 3 130 0 1 1348 374 134 6 63 chr11 100072132 100072291 -21771565 + T-rich Low_complexity Low_complexity 1 150 0 1 1348 383 252 8 80 chr11 100072291 100072416 -21771440 - PB1D10 SINE Alu 0 117 2 1 1348 26 0 0 0 chr11 100072416 100072442 -21771414 + AT_rich Low_complexity Low_complexity 1 26 0 1 1348 487 296 0 91 chr11 100072447 100072538 -21771318 + ID_B1 SINE B4 60 139 -153 1 1348 1332 86 16 0 chr11 100072538 100072725 -21771131 + B2_Mm1a SINE B2 1 190 -3 1 1348 487 293 0 70 chr11 100072725 100072813 -21771043 + ID_B1 SINE B4 136 214 -10 1 1348 369 197 0 0 chr11 100072813 100072889 -21770967 + (ATG)n Simple_repeat Simple_repeat 2 77 0 1 1348 738 323 65 23 chr11 100072897 100073331 -21770525 - L1MC4a LINE L1 -24 7858 7407 1 1348 609 14 0 0 chr11 100073761 100073831 -21770025 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1348 711 0 0 0 chr11 100073879 100073958 -21769898 + (CTTG)n Simple_repeat Simple_repeat 1 79 0 1 1348 322 210 125 39 chr11 100073959 100074063 -21769793 - PB1 SINE Alu -13 114 2 1 1348 1207 54 0 0 chr11 100074188 100074335 -21769521 - B1_Mm SINE Alu 0 147 1 1 1348 1153 146 116 0 chr11 100074889 100075088 -21768768 - URR1A DNA MER1_type -4 222 1 1 1348 192 329 41 0 chr11 100075089 100075162 -21768694 - MIR3 SINE MIR -49 159 84 1 1348 315 164 0 0 chr11 100075659 100075720 -21768136 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 1 1348 357 155 17 0 chr11 100075782 100075840 -21768016 + ID4 SINE ID 7 65 -18 1 1348 361 239 13 0 chr11 100075891 100076050 -21767806 + (TGGA)n Simple_repeat Simple_repeat 2 162 0 1 1348 239 324 57 29 chr11 100077333 100077438 -21766418 - MER63D DNA AcHobo -3 1058 951 1 1348 885 246 14 0 chr11 100077572 100077783 -21766073 + B3 SINE B2 1 214 -2 1 1348 23 0 0 0 chr11 100077856 100077879 -21765977 + AT_rich Low_complexity Low_complexity 1 23 0 1 1348 719 197 51 7 chr11 100077924 100078062 -21765794 + ID_B1 SINE B4 81 224 0 1 1348 22 35 0 0 chr11 100078068 100078097 -21765759 + AT_rich Low_complexity Low_complexity 1 29 0 1 1348 533 219 84 0 chr11 100078204 100078320 -21765536 - MER63D DNA AcHobo -773 288 163 1 1348 2279 105 21 76 chr11 100078320 100078701 -21765155 - RLTR8 LTR ERVK 0 365 6 1 1348 1340 99 16 5 chr11 100078702 100078894 -21764962 + B2_Mm2 SINE B2 2 195 0 1 1348 618 258 19 6 chr11 100078912 100079072 -21764784 - MER63D DNA AcHobo -896 165 4 1 1348 294 222 0 0 chr11 100079548 100079638 -21764218 + (TGG)n Simple_repeat Simple_repeat 1 90 0 1 1348 1432 58 27 0 chr11 100079679 100079867 -21763989 + B2_Mm1a SINE B2 1 193 0 1 1348 353 214 16 118 chr11 100080610 100080747 -21763109 + MIRc SINE MIR 40 165 -103 1 1348 750 237 31 51 chr11 100081217 100081413 -21762443 + B3A SINE B2 1 192 -6 1 1348 211 304 0 35 chr11 100081588 100081646 -21762210 - B1F SINE Alu -2 147 92 1 1348 555 16 0 0 chr11 100081648 100081712 -21762144 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1348 24 0 0 0 chr11 100081740 100081764 -21762092 + AT_rich Low_complexity Low_complexity 1 24 0 1 1348 582 281 15 0 chr11 100081778 100081913 -21761943 + ID_B1 SINE B4 82 218 -6 1 1348 419 281 58 9 chr11 100081983 100082113 -21761743 + PB1D10 SINE Alu 1 132 -16 1 1348 279 276 0 9 chr11 100082118 100082217 -21761639 + ID4_ SINE ID 28 124 -28 1 1348 371 214 33 12 chr11 100082187 100082294 -21761562 - PB1 SINE Alu -204 110 1 1 1348 1331 108 0 20 chr11 100082316 100082515 -21761341 - B2_Mm2 SINE B2 0 195 1 1 1348 180 0 0 0 chr11 100082515 100082535 -21761321 + (CCA)n Simple_repeat Simple_repeat 2 21 0 1 1348 750 207 189 6 chr11 100083716 100083896 -21759960 - ID_B1 SINE B4 -6 218 6 1 1348 240 258 61 20 chr11 100084358 100084457 -21759399 + ORR1D2 LTR MaLR 268 370 0 1 1348 258 352 26 66 chr11 100084747 100084975 -21758881 + L1M5 LINE L1 5485 5703 -421 1 1348 517 263 0 17 chr11 100085698 100085814 -21758042 + PB1D10 SINE Alu 1 114 -3 1 1348 782 324 109 52 chr11 100086046 100087309 -21756547 + HAL1 LINE L1 594 1929 -578 1 1348 1231 62 0 0 chr11 100087310 100087456 -21756400 + B1_Mm SINE Alu 2 147 0 1 1348 195 69 0 0 chr11 100087456 100087485 -21756371 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1348 573 324 199 29 chr11 100087485 100087937 -21755919 + HAL1 LINE L1 1911 2439 -68 1 1348 333 218 23 39 chr11 100087938 100088201 -21755655 + (CA)n Simple_repeat Simple_repeat 1 258 0 1 1348 897 128 0 0 chr11 100088704 100088884 -21754972 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1348 7442 82 31 8 chr11 100092029 100093029 -21750827 + RLTR13D5 LTR ERVK 1 1023 0 1 1348 240 35 0 0 chr11 100094709 100094738 -21749118 + (C)n Simple_repeat Simple_repeat 1 29 0 1 1348 283 109 0 0 chr11 100095441 100095487 -21748369 + BGLII_A LTR ERVK 1 46 -399 1 1348 1208 228 15 11 chr11 100095487 100095757 -21748099 + RLTR17 LTR ERVK 348 618 -74 1 1348 725 105 9 0 chr11 100096511 100096616 -21747240 - B1_Mus2 SINE Alu 0 147 42 1 1348 224 0 0 157 chr11 100096619 100096727 -21747129 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 1 1348 276 149 0 0 chr11 100096727 100096774 -21747082 + (TCTCTG)n Simple_repeat Simple_repeat 1 47 0 1 1348 271 164 18 35 chr11 100096776 100096833 -21747023 - B1_Mur4 SINE Alu -90 60 5 1 1348 31 0 0 0 chr11 100097106 100097137 -21746719 + AT_rich Low_complexity Low_complexity 1 31 0 1 1348 2813 94 45 19 chr11 100097235 100097669 -21746187 + RMER16 LTR ERVK 1 533 0 1 1348 9323 98 40 7 chr11 100097670 100099001 -21744855 + RMER16-int LTR ERVK 2 1376 -4030 1 1348 14249 106 41 18 chr11 100098996 100101808 -21742048 + RMER16-int LTR ERVK 1497 4472 -934 1 1348 1036 103 7 20 chr11 100101808 100101957 -21741899 - B1_Mus1 SINE Alu -1 147 1 2 1348 8356 146 49 57 chr11 100101957 100102906 -21740950 + RMER16-int LTR ERVK 4473 5406 0 1 1348 2812 104 46 43 chr11 100102930 100103391 -21740465 + RMER16 LTR ERVK 70 531 -2 1 1348 5303 159 26 25 chr11 100103393 100104572 -21739284 + MYSERV16_I-int LTR ERVK 971 2199 -127 2 1348 422 158 165 8 chr11 100105026 100105147 -21738709 + MYSERV16_I-int LTR ERVK 2186 2325 -1 2 1348 3242 158 35 21 chr11 100105147 100105676 -21738180 + RLTR20B3 LTR ERVK 1 521 -56 2 1348 180 0 0 0 chr11 100105676 100105696 -21738160 + (CTG)n Simple_repeat Simple_repeat 2 21 0 2 1348 3242 158 35 21 chr11 100105696 100105735 -21738121 + RLTR20B3 LTR ERVK 522 576 -1 2 1348 542 171 11 49 chr11 100105935 100106120 -21737736 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1348 555 16 0 0 chr11 100106700 100106764 -21737092 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1348 576 106 0 0 chr11 100106766 100106851 -21737005 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1348 218 16 0 127 chr11 100109080 100109151 -21734705 + (TCTCCC)n Simple_repeat Simple_repeat 1 62 0 2 1348 186 193 0 0 chr11 100109884 100109941 -21733915 + (CCA)n Simple_repeat Simple_repeat 1 57 0 2 1348 792 188 0 0 chr11 100112470 100112603 -21731253 - B1_Mus2 SINE Alu -6 141 9 2 1348 753 133 120 0 chr11 100112787 100112945 -21730911 + MYSERV16_I-int LTR ERVK 2149 2325 -1 2 1348 3184 141 32 12 chr11 100112945 100113506 -21730350 + RLTR20B3 LTR ERVK 6 577 0 2 1348 375 23 0 0 chr11 100113712 100113756 -21730100 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1348 483 48 0 0 chr11 100113815 100113877 -21729979 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1348 190 289 161 15 chr11 100114372 100114502 -21729354 - MER5B DNA MER1_type 0 178 30 2 1348 187 292 21 0 chr11 100114733 100114781 -21729075 - L2b LINE L2 -3 3372 3324 2 1348 288 0 0 0 chr11 100117487 100117519 -21726337 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1348 234 62 0 0 chr11 100120029 100120061 -21723795 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1348 459 52 0 0 chr11 100122542 100122600 -21721256 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1348 459 0 0 0 chr11 100125299 100125350 -21718506 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1348 189 154 0 0 chr11 100125352 100125391 -21718465 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1348 22 0 0 0 chr11 100127913 100127935 -21715921 + AT_rich Low_complexity Low_complexity 1 22 0 2 1348 228 316 7 126 chr11 100128877 100129170 -21714686 + L2a LINE L2 3110 3418 -8 2 1348 630 250 14 14 chr11 100131880 100132026 -21711830 + RSINE1 SINE B4 1 146 -19 2 1348 360 0 0 0 chr11 100132028 100132068 -21711788 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1348 540 0 0 0 chr11 100132068 100132127 -21711729 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 1348 184 268 0 0 chr11 100132876 100132917 -21710939 + L3b LINE CR1 258 298 -184 2 1348 309 261 68 17 chr11 100133616 100133733 -21710123 + B1F SINE Alu 24 146 -3 2 1348 610 256 24 30 chr11 100133746 100133911 -21709945 + RSINE1 SINE B4 2 165 0 2 1348 528 214 0 23 chr11 100133927 100134193 -21709663 + (CA)n Simple_repeat Simple_repeat 1 259 0 2 1348 422 88 15 0 chr11 100134281 100134349 -21709507 + (TTG)n Simple_repeat Simple_repeat 2 70 0 2 1348 837 113 8 8 chr11 100134363 100134497 -21709359 - B1_Mur4 SINE Alu -1 149 16 2 1348 1032 212 10 19 chr11 100134526 100134733 -21709123 + B3 SINE B2 3 207 -9 2 1348 31 26 0 0 chr11 100134733 100134771 -21709085 + AT_rich Low_complexity Low_complexity 1 38 0 2 1348 682 130 0 0 chr11 100134795 100134903 -21708953 + B1_Mur3 SINE Alu 40 147 -2 2 1348 22 0 0 0 chr11 100134906 100134928 -21708928 + AT_rich Low_complexity Low_complexity 1 22 0 2 1348 2451 216 59 44 chr11 100136555 100136684 -21707172 - Lx9 LINE L1 -1 7643 7506 2 1348 420 20 0 0 chr11 100136684 100136733 -21707123 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1348 2451 216 59 44 chr11 100136733 100137265 -21706591 - Lx9 LINE L1 -139 7505 6973 2 1348 1258 47 0 0 chr11 100137620 100137768 -21706088 + B1_Mus1 SINE Alu 1 148 0 2 1348 243 333 12 12 chr11 100138557 100138639 -21705217 + MLT1C LTR MaLR 23 104 -401 2 1348 244 296 57 0 chr11 100138752 100138840 -21705016 + MLT1C LTR MaLR 294 386 -81 2 1348 615 14 0 0 chr11 100138850 100138922 -21704934 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1349 245 212 119 63 chr11 100139161 100139287 -21704569 - L2b LINE L2 -5 3370 3238 2 1349 800 160 193 0 chr11 100139916 100140067 -21703789 - URR1A DNA MER1_type 0 226 63 2 1349 180 0 0 0 chr11 100140067 100140087 -21703769 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1349 800 160 193 0 chr11 100140087 100140116 -21703740 - URR1A DNA MER1_type -164 62 12 2 1349 226 342 0 13 chr11 100140476 100140553 -21703303 - ID4_ SINE ID -5 78 3 2 1349 906 214 102 20 chr11 100140588 100140784 -21703072 - ID_B1 SINE B4 -8 216 5 2 1349 344 279 0 0 chr11 100141038 100141117 -21702739 - PB1 SINE Alu 0 127 49 2 1349 491 256 31 62 chr11 100141178 100141370 -21702486 - B3 SINE B2 0 216 31 2 1349 826 184 7 0 chr11 100141411 100141547 -21702309 - B1_Mur2 SINE Alu -8 141 5 2 1349 502 211 0 71 chr11 100141565 100141677 -21702179 - ID_B1 SINE B4 -2 222 119 2 1349 2477 131 84 0 chr11 100141848 100142229 -21701627 - MTC LTR MaLR -4 417 5 2 1349 640 250 84 12 chr11 100144234 100144400 -21699456 + B3A SINE B2 5 182 -16 2 1349 1139 64 13 0 chr11 100144663 100144819 -21699037 + (GAAA)n Simple_repeat Simple_repeat 4 161 0 2 1349 244 312 24 36 chr11 100147649 100147732 -21696124 + ID4 SINE ID 1 82 -1 2 1349 333 0 0 0 chr11 100148812 100148849 -21695007 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1349 527 186 10 0 chr11 100149156 100149253 -21694603 + B1F1 SINE Alu 20 117 -32 2 1349 207 88 0 0 chr11 100149267 100149301 -21694555 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 2 1349 554 0 0 15 chr11 100149310 100149377 -21694479 + (GAGAA)n Simple_repeat Simple_repeat 5 70 0 2 1349 915 109 6 58 chr11 100149439 100149595 -21694261 + B1_Mur3 SINE Alu 2 149 0 2 1349 309 294 0 17 chr11 100150855 100150945 -21692911 + MIR3 SINE MIR 85 177 -99 2 1349 207 0 0 0 chr11 100151402 100151425 -21692431 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1349 915 170 0 7 chr11 100153214 100153368 -21690488 - B3 SINE B2 -61 155 3 2 1349 870 224 30 45 chr11 100153377 100153578 -21690278 - B3A SINE B2 0 198 1 2 1349 321 361 53 31 chr11 100153596 100153751 -21690105 - L1ME3A LINE L1 -35 6138 5979 2 1349 1289 93 16 21 chr11 100153751 100153938 -21689918 - B2_Mm2 SINE B2 -9 186 1 2 1349 321 361 53 31 chr11 100153938 100154008 -21689848 - L1ME3A LINE L1 -195 5978 5909 2 1349 1029 195 36 18 chr11 100155177 100155396 -21688460 + ID_B1 SINE B4 2 224 0 2 1349 1015 149 104 35 chr11 100155795 100155996 -21687860 + B3 SINE B2 2 216 0 2 1349 251 145 0 38 chr11 100156007 100156086 -21687770 + T-rich Low_complexity Low_complexity 1 76 0 2 1349 278 288 8 112 chr11 100156105 100156230 -21687626 - PB1D7 SINE Alu -8 112 1 2 1349 259 208 0 0 chr11 100156444 100156497 -21687359 - ID4 SINE ID -29 54 2 2 1349 331 273 0 0 chr11 100156504 100156581 -21687275 + MER58B DNA MER1_type 127 203 -138 2 1349 287 230 121 44 chr11 100156927 100157018 -21686838 - MTD LTR MaLR -304 115 18 2 1349 344 255 188 8 chr11 100157630 100157764 -21686092 + MIRb SINE MIR 7 154 -122 2 1349 747 292 35 0 chr11 100157766 100157968 -21685888 + B4 SINE B4 82 290 -2 2 1349 1195 81 0 23 chr11 100158126 100158303 -21685553 + B2_Mm2 SINE B2 2 174 -21 2 1349 405 0 0 0 chr11 100158782 100158827 -21685029 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1349 209 286 187 0 chr11 100159022 100159113 -21684743 + L2a LINE L2 3317 3424 -2 2 1349 228 250 0 0 chr11 100159535 100159599 -21684257 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1349 343 254 71 202 chr11 100160417 100160502 -21683354 + ID SINE ID 12 82 -142 2 1349 1402 85 0 6 chr11 100160502 100160680 -21683176 + B2_Mm2 SINE B2 1 177 -18 2 1349 343 254 71 202 chr11 100160680 100160762 -21683094 + ID_B1 SINE B4 83 157 -67 2 1349 498 283 47 31 chr11 100160763 100160907 -21682949 + B3A SINE B2 3 153 -45 2 1349 360 0 0 0 chr11 100160907 100160947 -21682909 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1349 498 283 47 31 chr11 100160947 100160995 -21682861 + B3A SINE B2 154 198 0 2 1349 270 0 0 0 chr11 100161022 100161052 -21682804 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1349 1149 44 0 0 chr11 100161054 100161189 -21682667 - B1_Mus1 SINE Alu -13 135 1 2 1349 922 200 99 10 chr11 100161202 100161404 -21682452 - MTC LTR MaLR -8 413 194 2 1349 868 67 160 0 chr11 100161443 100161562 -21682294 - B1_Mus1 SINE Alu -10 138 1 2 1349 231 65 0 0 chr11 100161562 100161593 -21682263 - MTC LTR MaLR -211 210 180 2 1349 538 165 275 0 chr11 100161593 100161702 -21682154 + B1_Mus1 SINE Alu 3 141 -7 2 1349 186 43 0 0 chr11 100161702 100161725 -21682131 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1349 778 210 61 22 chr11 100161732 100161912 -21681944 + B3 SINE B2 30 216 0 2 1349 1082 137 55 0 chr11 100161929 100162111 -21681745 - MTC LTR MaLR -228 193 2 2 1349 235 250 62 0 chr11 100162249 100162329 -21681527 + (CGGGG)n Simple_repeat Simple_repeat 1 85 0 2 1349 251 246 0 0 chr11 100162261 100162318 -21681538 + G-rich Low_complexity Low_complexity 1 57 0 2 1349 448 235 1 0 chr11 100162471 100162577 -21681279 + B1_Mur2 SINE Alu 3 109 -11 2 1349 711 90 0 0 chr11 100162581 100162681 -21681175 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 2 1349 184 271 100 0 chr11 100162691 100162761 -21681095 - L2a LINE L2 -268 3158 3082 2 1349 729 223 163 32 chr11 100162874 100163064 -21680792 + B3 SINE B2 2 216 0 2 1349 654 132 0 28 chr11 100163296 100163405 -21680451 + URR1A DNA MER1_type 1 106 -120 2 1349 1648 26 5 5 chr11 100163406 100163598 -21680258 - B2_Mm1a SINE B2 0 193 2 2 1349 997 65 0 0 chr11 100163598 100163737 -21680119 - B2_Mm1a SINE B2 -1 192 54 2 1349 625 100 10 0 chr11 100163737 100163837 -21680019 + URR1A DNA MER1_type 94 194 -32 2 1349 32 43 0 0 chr11 100164052 100164098 -21679758 + AT_rich Low_complexity Low_complexity 1 46 0 2 1349 279 0 0 0 chr11 100164122 100164153 -21679703 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1349 563 175 17 17 chr11 100164164 100164280 -21679576 - ORR1B1 LTR MaLR -274 120 5 2 1349 504 222 10 0 chr11 100164287 100164386 -21679470 - B3A SINE B2 -98 100 1 2 1349 404 214 165 0 chr11 100164390 100164493 -21679363 - PB1D9 SINE Alu 0 120 1 2 1349 243 224 0 0 chr11 100164502 100164551 -21679305 - ID_B1 SINE B4 -9 215 167 3 1349 1039 256 82 32 chr11 100164571 100164914 -21678942 + MTD LTR MaLR 24 383 -36 3 1349 1287 69 69 0 chr11 100164967 100165142 -21678714 - B2_Mm2 SINE B2 -7 188 2 3 1349 636 182 0 0 chr11 100165157 100165267 -21678589 - PB1D9 SINE Alu -2 118 9 3 1349 222 215 162 12 chr11 100165284 100165364 -21678492 - PB1D7 SINE Alu 0 120 29 3 1349 1437 108 18 104 chr11 100165379 100165573 -21678283 + MTB_Mm LTR MaLR 1 195 -212 3 1349 1701 31 0 0 chr11 100165573 100165765 -21678091 + B2_Mm1a SINE B2 1 192 -1 3 1349 1437 108 18 104 chr11 100165765 100165849 -21678007 + MTB_Mm LTR MaLR 196 255 -152 3 1349 581 126 32 0 chr11 100165800 100165895 -21677961 - ORR1B1-int LTR MaLR -371 1592 1495 2 1349 2386 131 13 39 chr11 100165895 100165946 -21677910 - ORR1B1-int LTR MaLR -761 1202 1169 2 1349 1099 92 108 11 chr11 100165946 100166122 -21677734 - B2_Mm1a SINE B2 0 193 1 3 1349 2386 131 13 39 chr11 100166122 100166532 -21677324 - ORR1B1-int LTR MaLR -795 1168 753 2 1349 326 259 25 67 chr11 100167136 100167256 -21676600 + PB1D10 SINE Alu 1 115 -2 3 1349 532 185 18 44 chr11 100167294 100167407 -21676449 + B3 SINE B2 2 111 -105 3 1349 1223 76 35 0 chr11 100167458 100167630 -21676226 + B2_Mm1t SINE B2 2 179 -14 3 1349 466 133 313 17 chr11 100167677 100167792 -21676064 + B2_Mm2 SINE B2 47 195 0 3 1349 444 37 0 0 chr11 100167792 100167846 -21676010 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 3 1349 375 121 0 0 chr11 100167861 100167919 -21675937 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1349 840 164 68 38 chr11 100167928 100168217 -21675639 + RMER17C LTR ERVK 1 410 0 3 1349 240 35 0 0 chr11 100168229 100168258 -21675598 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1349 400 243 27 155 chr11 100168299 100168518 -21675338 - B3A SINE B2 -3 195 5 3 1349 629 196 0 80 chr11 100168539 100168707 -21675149 - B1_Mur2 SINE Alu 0 149 1 3 1349 218 119 0 23 chr11 100168722 100168765 -21675091 + (GTTTG)n Simple_repeat Simple_repeat 5 46 0 3 1349 265 272 0 58 chr11 100169748 100169834 -21674022 - ID4_ SINE ID -1 82 2 3 1349 252 204 0 0 chr11 100169866 100169910 -21673946 + B1_Mur4 SINE Alu 1 44 -106 3 1349 219 57 57 0 chr11 100169905 100169940 -21673916 + B1_Mus2 SINE Alu 100 136 -11 3 1349 1056 67 0 0 chr11 100170014 100170148 -21673708 - B1_Mus2 SINE Alu -13 134 1 3 1349 1409 63 26 0 chr11 100170153 100170343 -21673513 - B2_Mm2 SINE B2 0 195 1 3 1349 321 285 56 68 chr11 100170345 100170356 -21673500 - B2_Mm2 SINE B2 -1 194 184 3 1349 752 193 13 65 chr11 100170356 100170511 -21673345 - B1_Mur1 SINE Alu 0 149 3 3 1349 455 242 127 15 chr11 100170511 100170661 -21673195 - B3A SINE B2 -1 197 35 3 1349 1088 45 0 0 chr11 100170716 100170850 -21673006 + B1_Mus1 SINE Alu 2 135 -13 3 1349 522 46 0 0 chr11 100170850 100170915 -21672941 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 3 1349 1475 311 83 36 chr11 100171183 100171969 -21671887 - Lx8 LINE L1 -4 7469 6647 3 1349 351 226 0 109 chr11 100171969 100172088 -21671768 + MT2B LTR ERVL 152 257 -344 3 1349 840 168 0 7 chr11 100171990 100172134 -21671722 + B1_Mus2 SINE Alu 5 147 0 3 1349 332 305 107 0 chr11 100172135 100172266 -21671590 - Lx8 LINE L1 -842 6631 6487 3 1349 1204 41 0 0 chr11 100172337 100172484 -21671372 + B1_Mus1 SINE Alu 2 148 0 3 1349 397 277 102 41 chr11 100172548 100172695 -21671161 - MTD LTR MaLR -50 357 202 3 1349 257 270 48 39 chr11 100172742 100172846 -21671010 + PB1D9 SINE Alu 2 106 -14 3 1349 489 76 0 0 chr11 100172848 100172914 -21670942 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 3 1349 577 214 17 0 chr11 100172915 100173032 -21670824 - MTD LTR MaLR -300 119 1 3 1349 365 325 117 46 chr11 100173686 100174037 -21669819 - MamGypLTR1a LTR Gypsy -20 764 389 3 1349 1024 71 42 7 chr11 100174159 100174301 -21669555 + B1_Mus1 SINE Alu 2 148 0 3 1349 25 0 0 0 chr11 100174301 100174326 -21669530 + AT_rich Low_complexity Low_complexity 1 25 0 3 1349 284 233 0 215 chr11 100174379 100174472 -21669384 + ID4_ SINE ID 4 76 -7 3 1349 23 33 0 0 chr11 100174584 100174614 -21669242 + AT_rich Low_complexity Low_complexity 1 30 0 3 1349 354 138 0 0 chr11 100175126 100175184 -21668672 + (CAGA)n Simple_repeat Simple_repeat 3 60 0 3 1349 593 189 16 0 chr11 100175202 100175324 -21668532 + B1_Mur3 SINE Alu 24 147 -2 3 1349 1147 54 0 0 chr11 100175328 100175475 -21668381 + B1_Mus2 SINE Alu 1 147 0 3 1349 257 284 0 10 chr11 100175475 100175565 -21668291 + A-rich Low_complexity Low_complexity 5 94 0 3 1349 330 239 93 76 chr11 100175565 100175683 -21668173 + PB1D7 SINE Alu 1 120 0 3 1349 257 284 0 10 chr11 100175683 100175695 -21668161 + A-rich Low_complexity Low_complexity 95 106 0 3 1349 581 214 17 8 chr11 100175695 100175813 -21668043 + PB1D9 SINE Alu 2 120 0 3 1349 241 303 23 105 chr11 100175848 100175948 -21667908 + MT2B2 LTR ERVL 169 257 -327 3 1349 374 279 12 0 chr11 100175948 100176034 -21667822 + PB1D9 SINE Alu 1 87 -33 3 1349 547 124 268 25 chr11 100176410 100176567 -21667289 + B2_Mm2 SINE B2 1 195 0 3 1349 387 0 0 0 chr11 100176622 100176665 -21667191 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1349 900 152 0 0 chr11 100176665 100176803 -21667053 - B1_Mur4 SINE Alu -12 138 1 3 1349 334 284 84 24 chr11 100177310 100177476 -21666380 + MER45A DNA Tip100 1 176 -2 3 1349 416 266 26 0 chr11 100177518 100177631 -21666225 + PB1D10 SINE Alu 2 117 0 3 1349 1033 83 7 0 chr11 100177948 100178093 -21665763 + B1_Mus2 SINE Alu 2 147 0 3 1349 546 57 0 0 chr11 100178095 100178165 -21665691 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 3 1349 339 85 0 0 chr11 100178389 100178436 -21665420 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1349 252 232 0 0 chr11 100178557 100178613 -21665243 + ID_B1 SINE B4 169 224 0 3 1349 384 232 0 12 chr11 100178677 100178760 -21665096 + B3A SINE B2 4 85 -113 3 1349 518 219 199 17 chr11 100178820 100178853 -21665003 - B3 SINE B2 -1 215 184 3 1349 450 0 0 0 chr11 100178853 100178903 -21664953 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1349 518 219 199 17 chr11 100178903 100179050 -21664806 - B3 SINE B2 -33 183 2 3 1349 378 0 0 0 chr11 100179071 100179113 -21664743 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 3 1349 844 137 13 70 chr11 100179507 100179664 -21664192 - B1_Mur3 SINE Alu -1 148 1 3 1349 963 65 0 28 chr11 100179759 100179901 -21663955 - B1_Mm SINE Alu 0 147 10 3 1349 465 228 34 34 chr11 100179909 100180027 -21663829 - PB1D9 SINE Alu -1 119 2 3 1349 234 222 175 0 chr11 100180078 100180141 -21663715 - ID_B1 SINE B4 -67 157 84 3 1349 180 0 0 0 chr11 100180288 100180308 -21663548 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1349 960 68 8 0 chr11 100180308 100180440 -21663416 - B1_Mus1 SINE Alu 0 148 16 3 1349 479 157 226 0 chr11 100180436 100180551 -21663305 + B1_Mus2 SINE Alu 7 147 0 3 1349 230 274 97 0 chr11 100183669 100183731 -21660125 + RSINE1 SINE B4 57 124 -41 3 1349 273 339 57 8 chr11 100183949 100184071 -21659785 - ID_B1 SINE B4 -7 217 90 3 1349 447 234 72 0 chr11 100183966 100184077 -21659779 - B1_Mur4 SINE Alu -31 119 1 3 1349 1002 95 0 26 chr11 100184179 100184331 -21659525 + B1_Mus1 SINE Alu 1 148 0 3 1349 248 246 28 42 chr11 100184489 100184561 -21659295 + ID4 SINE ID 2 72 -11 3 1349 1390 73 5 0 chr11 100184576 100184767 -21659089 + B2_Mm1a SINE B2 2 193 0 3 1349 715 134 212 15 chr11 100184804 100185028 -21658828 + B2_Mm2 SINE B2 2 210 -6 3 1349 227 289 216 0 chr11 100185193 100185290 -21658566 - PB1 SINE Alu -4 123 6 3 1349 380 207 36 12 chr11 100185560 100185643 -21658213 - B1_Mur2 SINE Alu -5 144 60 3 1349 378 0 0 0 chr11 100185684 100185726 -21658130 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1349 214 268 54 0 chr11 100185726 100185782 -21658074 + PB1D10 SINE Alu 52 110 -7 3 1349 233 234 0 0 chr11 100185738 100185785 -21658071 + ID_B1 SINE B4 174 220 -4 3 1349 623 199 88 133 chr11 100185790 100185949 -21657907 + B3 SINE B2 1 164 -52 3 1349 1063 101 0 7 chr11 100185949 100186098 -21657758 + B1_Mus1 SINE Alu 1 148 0 3 1349 623 199 88 133 chr11 100186098 100186164 -21657692 + B3 SINE B2 165 216 0 3 1349 299 219 0 215 chr11 100186172 100186265 -21657591 + ID4_ SINE ID 4 76 -7 3 1349 332 314 38 0 chr11 100186826 100186931 -21656925 + PB1D10 SINE Alu 1 109 -8 3 1349 32 26 0 0 chr11 100186932 100186971 -21656885 + AT_rich Low_complexity Low_complexity 1 39 0 3 1349 1034 109 75 0 chr11 100187002 100187176 -21656680 - B2_Mm2 SINE B2 -6 189 3 3 1349 976 59 37 7 chr11 100187187 100187323 -21656533 - B1_Mus1 SINE Alu -6 142 3 3 1349 2369 148 44 33 chr11 100187331 100187785 -21656071 - RMER6B LTR ERVK -2 459 1 3 1349 474 292 8 30 chr11 100187907 100188041 -21655815 + ID_B1 SINE B4 79 209 -15 3 1349 315 71 0 0 chr11 100188041 100188083 -21655773 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3 1349 467 256 60 48 chr11 100188388 100188556 -21655300 + RLTR23 LTR ERV1 261 430 0 3 1349 485 237 0 9 chr11 100189309 100189424 -21654432 - PB1D9 SINE Alu -2 118 5 3 1349 273 57 0 0 chr11 100189484 100189519 -21654337 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1349 670 163 65 0 chr11 100189522 100189645 -21654211 - B1_Mur3 SINE Alu -18 131 1 3 1349 327 276 29 54 chr11 100189674 100189859 -21653997 - B3A SINE B2 0 195 7 3 1349 206 81 27 0 chr11 100189864 100189901 -21653955 + (CCA)n Simple_repeat Simple_repeat 2 39 0 3 1349 436 215 93 0 chr11 100189924 100190031 -21653825 + PB1D9 SINE Alu 3 119 -1 3 1349 943 39 131 0 chr11 100190037 100190167 -21653689 + B1_Mus1 SINE Alu 1 147 -1 3 1349 215 174 22 0 chr11 100190167 100190213 -21653643 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 3 1349 438 276 0 0 chr11 100190320 100190418 -21653438 + ID_B1 SINE B4 114 211 -13 4 1349 542 177 219 9 chr11 100190425 100190539 -21653317 + B1_Mur2 SINE Alu 4 141 -8 4 1349 925 210 35 5 chr11 100190553 100190754 -21653102 + B3 SINE B2 5 211 -5 4 1349 584 234 76 0 chr11 100190773 100190918 -21652938 + RSINE1 SINE B4 8 163 -2 4 1349 1325 80 37 0 chr11 100190991 100191178 -21652678 + B2_Mm2 SINE B2 2 195 0 4 1349 189 0 0 0 chr11 100191183 100191204 -21652652 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1349 316 303 73 0 chr11 100191220 100191329 -21652527 + MER2B DNA MER2_type 201 317 -19 4 1349 198 143 0 0 chr11 100191459 100191494 -21652362 + (AGGGGG)n Simple_repeat Simple_repeat 2 36 0 4 1349 268 295 13 13 chr11 100192101 100192180 -21651676 - ID4_ SINE ID -2 81 3 4 1349 585 250 0 0 chr11 100192236 100192360 -21651496 + RSINE1 SINE B4 29 152 -13 4 1349 462 179 11 54 chr11 100192393 100192520 -21651336 + B1_Mur4 SINE Alu 1 150 0 4 1349 1256 95 21 5 chr11 100192539 100192729 -21651127 + B2_Mm2 SINE B2 1 193 -2 4 1349 524 56 0 14 chr11 100192731 100192804 -21651052 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 4 1349 387 175 112 0 chr11 100192817 100192897 -21650959 + B3A SINE B2 5 93 -105 4 1349 443 208 192 0 chr11 100192941 100193066 -21650790 - B1_Mur3 SINE Alu 0 149 1 4 1349 228 412 29 0 chr11 100193382 100193518 -21650338 + MIR SINE MIR 92 231 -31 4 1349 180 111 0 0 chr11 100194497 100194524 -21649332 + (TCC)n Simple_repeat Simple_repeat 2 28 0 4 1349 197 132 26 0 chr11 100195782 100195820 -21648036 + GA-rich Low_complexity Low_complexity 1 39 0 4 1349 504 280 131 0 chr11 100196140 100196315 -21647541 + MER3 DNA MER1_type 1 198 -11 4 1349 304 242 164 0 chr11 100196386 100196514 -21647342 - B1F SINE Alu 0 149 1 4 1349 215 169 13 53 chr11 100196608 100196647 -21647209 + T-rich Low_complexity Low_complexity 38 73 0 4 1349 696 171 0 99 chr11 100196647 100196809 -21647047 - B1_Mus2 SINE Alu 0 147 2 4 1349 215 169 13 53 chr11 100196809 100196825 -21647031 + T-rich Low_complexity Low_complexity 22 37 0 4 1349 1129 75 0 0 chr11 100196825 100196971 -21646885 - B1_Mm SINE Alu 0 147 2 4 1349 215 169 13 53 chr11 100196971 100196989 -21646867 + T-rich Low_complexity Low_complexity 4 21 0 4 1349 201 94 0 0 chr11 100197032 100197064 -21646792 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1349 340 162 38 0 chr11 100197612 100197692 -21646164 + CT-rich Low_complexity Low_complexity 6 88 0 4 1349 625 296 38 0 chr11 100198417 100198576 -21645280 + B3A SINE B2 14 178 -20 4 1349 285 29 0 0 chr11 100198581 100198615 -21645241 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1349 3204 52 0 14 chr11 100198959 100199372 -21644484 + MTB_Mm LTR MaLR 1 407 0 4 1349 553 320 67 38 chr11 100199456 100199696 -21644160 + LTR16C LTR ERVL 213 459 -30 4 1349 957 280 106 35 chr11 100200475 100200729 -21643127 - MLT1C LTR MaLR -4 463 185 4 1349 213 39 0 0 chr11 100200729 100200755 -21643101 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1349 957 280 106 35 chr11 100200755 100200896 -21642960 - MLT1C LTR MaLR -283 184 40 4 1349 519 217 19 0 chr11 100200913 100201019 -21642837 + PB1D7 SINE Alu 3 110 -10 4 1349 937 254 0 19 chr11 100201033 100201242 -21642614 + B3 SINE B2 4 208 -8 4 1349 346 391 81 13 chr11 100201573 100201871 -21641985 + MERVL_2A-int LTR ERVL 1998 2315 -3446 4 1349 687 130 9 0 chr11 100201976 100202084 -21641772 + B1_Mus1 SINE Alu 40 148 0 4 1349 239 221 14 29 chr11 100202463 100202533 -21641323 - MER58D DNA MER1_type -11 375 307 4 1349 319 267 99 0 chr11 100202570 100202671 -21641185 + PB1D10 SINE Alu 10 120 -29 4 1349 351 254 146 62 chr11 100202681 100202811 -21641045 - B1F SINE Alu 0 149 9 4 1349 354 224 13 0 chr11 100202902 100202978 -21640878 + ID_B1 SINE B4 146 222 -2 4 1349 1203 106 0 50 chr11 100202988 100203187 -21640669 + B2_Mm2 SINE B2 5 193 -2 4 1349 1178 261 172 18 chr11 100203205 100203312 -21640544 + RMER15 LTR ERVL 47 176 -399 4 1349 1110 68 7 0 chr11 100203312 100203458 -21640398 - B1_Mm SINE Alu 0 147 1 4 1349 1178 261 172 18 chr11 100203458 100203798 -21640058 + RMER15 LTR ERVL 177 563 -12 4 1349 1017 256 5 5 chr11 100203802 100204026 -21639830 + ID_B1 SINE B4 1 224 0 4 1349 1154 72 15 72 chr11 100204034 100204058 -21639798 - B2_Mm2 SINE B2 -8 187 170 4 1349 1167 48 7 0 chr11 100204058 100204204 -21639652 - B1_Mm SINE Alu 0 147 1 4 1349 1154 72 15 72 chr11 100204204 100204374 -21639482 - B2_Mm2 SINE B2 -26 169 4 4 1349 21 0 0 0 chr11 100204390 100204411 -21639445 + AT_rich Low_complexity Low_complexity 1 21 0 4 1349 1163 61 0 0 chr11 100204697 100204844 -21639012 + B1_Mm SINE Alu 1 147 0 4 1349 250 307 0 13 chr11 100205309 100205385 -21638471 + ID2 SINE ID 2 76 -7 4 1349 3171 143 86 11 chr11 100205459 100206026 -21637830 + RMER19C LTR ERVK 1 610 -1 4 1349 767 183 21 21 chr11 100206367 100206512 -21637344 - B1_Mur1 SINE Alu 0 149 5 4 1349 225 237 0 0 chr11 100206528 100206587 -21637269 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 4 1349 370 263 99 22 chr11 100206681 100206888 -21636968 - B4A SINE B4 -14 278 8 4 1349 414 262 9 28 chr11 100206907 100207013 -21636843 - PB1D10 SINE Alu -2 115 12 4 1349 538 272 8 0 chr11 100207085 100207210 -21636646 + B1_Mur1 SINE Alu 5 130 -19 4 1349 295 296 65 0 chr11 100207227 100207335 -21636521 + MTE-int LTR MaLR 1311 1425 -155 4 1349 297 0 0 0 chr11 100207336 100207369 -21636487 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1349 721 148 23 15 chr11 100207369 100207493 -21636363 - B1_Mus1 SINE Alu -9 139 13 4 1349 207 276 145 8 chr11 100207901 100208018 -21635838 + MIRc SINE MIR 47 179 -89 4 1349 867 165 0 0 chr11 100208115 100208606 -21635250 + (CA)n Simple_repeat Simple_repeat 1 491 0 4 1349 350 281 115 40 chr11 100209627 100209801 -21634055 + MIRb SINE MIR 18 204 -64 4 1349 218 333 78 0 chr11 100211213 100211303 -21632553 - MIRc SINE MIR -142 126 30 4 1349 741 129 105 0 chr11 100211642 100211766 -21632090 + B1_Mus2 SINE Alu 4 140 -7 4 1349 1357 57 11 0 chr11 100211772 100211947 -21631909 + B2_Mm1t SINE B2 3 179 -14 4 1349 308 121 310 26 chr11 100211998 100212114 -21631742 + B2_Mm2 SINE B2 47 195 0 4 1349 390 147 40 0 chr11 100212114 100212189 -21631667 + GA-rich Low_complexity Low_complexity 1 78 0 4 1349 733 100 0 24 chr11 100212189 100212312 -21631544 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 4 1349 287 253 0 13 chr11 100214560 100214636 -21629220 - PB1D10 SINE Alu -41 76 2 4 1349 283 332 82 30 chr11 100214638 100214811 -21629045 - MIRc SINE MIR -72 196 14 4 1349 250 231 0 15 chr11 100215320 100215386 -21628470 + CT-rich Low_complexity Low_complexity 2 66 0 4 1349 378 0 0 0 chr11 100218118 100218160 -21625696 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1349 34 0 0 0 chr11 100218464 100218498 -21625358 + AT_rich Low_complexity Low_complexity 1 34 0 4 1349 867 269 25 41 chr11 100218501 100218745 -21625111 - B4A SINE B4 -15 277 38 4 1349 234 0 0 0 chr11 100218777 100218803 -21625053 + (TATG)n Simple_repeat Simple_repeat 2 27 0 4 1349 923 176 122 0 chr11 100218823 100219011 -21624845 - B3 SINE B2 -5 211 1 4 1349 549 194 152 23 chr11 100219024 100219156 -21624700 - B1F SINE Alu 0 149 1 4 1349 226 224 17 0 chr11 100219183 100219241 -21624615 + B1_Mur2 SINE Alu 89 147 -2 4 1349 330 167 0 0 chr11 100219248 100219308 -21624548 + T-rich Low_complexity Low_complexity 1 60 0 4 1349 1103 95 0 0 chr11 100219308 100219455 -21624401 - B1_Mus1 SINE Alu 0 148 2 4 1349 591 92 0 0 chr11 100219673 100219760 -21624096 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1349 461 301 18 0 chr11 100220071 100220184 -21623672 + ID_B1 SINE B4 90 204 -20 4 1349 201 130 102 61 chr11 100220265 100220314 -21623542 - L2c LINE L2 0 3387 3337 4 1349 395 220 9 44 chr11 100220403 100220517 -21623339 - B4A SINE B4 -58 234 125 4 1349 926 186 4 112 chr11 100220642 100220891 -21622965 - ORR1D1 LTR MaLR -151 223 2 4 1349 269 293 153 28 chr11 100221089 100221233 -21622623 - L2b LINE L2 -2 3373 3212 4 1349 290 255 26 62 chr11 100221243 100221324 -21622532 + PB1D10 SINE Alu 9 86 -31 4 1349 1824 198 24 136 chr11 100221324 100221914 -21621942 - RLTR28 LTR ERVL 0 524 1 4 1349 290 255 26 62 chr11 100221914 100221945 -21621911 + PB1D10 SINE Alu 87 117 0 4 1349 256 178 53 7 chr11 100222141 100222198 -21621658 + B1_Mur4 SINE Alu 9 66 -84 4 1349 222 228 0 17 chr11 100222187 100222245 -21621611 - B2_Mm2 SINE B2 -138 57 1 4 1349 326 245 75 38 chr11 100222575 100222681 -21621175 + PB1D9 SINE Alu 11 120 0 4 1349 203 0 37 0 chr11 100222685 100222712 -21621144 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 4 1349 189 0 0 0 chr11 100222925 100222946 -21620910 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1349 206 286 0 0 chr11 100223736 100223792 -21620064 + L2b LINE L2 3311 3366 -9 4 1349 191 250 108 15 chr11 100225034 100225099 -21618757 + L2c LINE L2 3313 3383 -4 4 1349 583 265 29 29 chr11 100225113 100225288 -21618568 - B3 SINE B2 -15 201 27 4 1349 286 196 0 0 chr11 100225375 100225426 -21618430 - B3 SINE B2 -159 57 7 4 1349 299 296 68 11 chr11 100225442 100225542 -21618314 - PB1D10 SINE Alu -8 109 1 4 1349 218 233 43 43 chr11 100225833 100225927 -21617929 + MIRb SINE MIR 42 135 -133 4 1349 633 171 90 1 chr11 100226151 100226287 -21617569 + B1_Mur2 SINE Alu 5 150 0 4 1349 880 114 24 6 chr11 100226287 100226455 -21617401 + (GA)n Simple_repeat Simple_repeat 1 171 0 4 1349 373 271 43 79 chr11 100226510 100226650 -21617206 + B1F SINE Alu 7 141 -8 5 1349 211 204 56 0 chr11 100226651 100226705 -21617151 + GA-rich Low_complexity Low_complexity 4 60 0 5 1349 703 283 121 72 chr11 100227265 100227659 -21616197 + MLT2B1 LTR ERVL 99 519 -36 5 1349 431 256 125 55 chr11 100227665 100227793 -21616063 - ID_B1 SINE B4 -7 217 81 5 1349 297 0 0 0 chr11 100227813 100227846 -21616010 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1349 306 0 0 0 chr11 100227846 100227879 -21615977 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1349 853 138 14 42 chr11 100227880 100228024 -21615832 - B1_Mus1 SINE Alu -6 142 3 5 1349 463 256 203 0 chr11 100228336 100228469 -21615387 - RSINE1 SINE B4 -2 163 4 5 1349 243 0 0 0 chr11 100228542 100228569 -21615287 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 5 1349 1204 64 0 0 chr11 100228569 100228726 -21615130 - B2_Mm2 SINE B2 -38 157 1 5 1349 322 255 245 40 chr11 100228749 100228900 -21614956 - B3A SINE B2 -16 182 1 5 1349 434 262 33 46 chr11 100228964 100229116 -21614740 + B4A SINE B4 80 229 -63 5 1349 368 153 56 0 chr11 100229126 100229198 -21614658 + RSINE1 SINE B4 6 81 -84 5 1349 213 0 81 0 chr11 100229759 100229796 -21614060 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 5 1349 1266 41 0 0 chr11 100229798 100229944 -21613912 - B1_Mus2 SINE Alu 0 147 2 5 1349 784 214 154 0 chr11 100229956 100230138 -21613718 - B3 SINE B2 -6 210 1 5 1349 198 0 0 0 chr11 100232450 100232472 -21611384 + (TGGGGG)n Simple_repeat Simple_repeat 4 25 0 5 1349 230 337 69 0 chr11 100232975 100233076 -21610780 + B1F SINE Alu 41 148 -1 5 1349 290 262 35 23 chr11 100233087 100233173 -21610683 + BC1_Mm scRNA scRNA 2 88 -64 5 1349 268 350 87 29 chr11 100233173 100233195 -21610661 + ID_B1 SINE B4 2 219 -5 5 1349 350 306 10 0 chr11 100233195 100233293 -21610563 + B1F SINE Alu 46 144 -5 5 1349 189 0 0 0 chr11 100233293 100233314 -21610542 + (TTC)n Simple_repeat Simple_repeat 1 21 0 5 1349 612 97 0 0 chr11 100233499 100233592 -21610264 + (GA)n Simple_repeat Simple_repeat 1 93 0 5 1349 272 287 5 211 chr11 100234301 100234365 -21609491 + ID SINE ID 3 63 -161 5 1349 429 20 0 0 chr11 100234365 100234415 -21609441 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1349 272 287 5 211 chr11 100234415 100234460 -21609396 + ID SINE ID 64 73 -151 5 1349 385 243 20 48 chr11 100234460 100234564 -21609292 + PB1D7 SINE Alu 1 102 -18 5 1349 351 195 28 85 chr11 100234569 100234679 -21609177 + PB1D10 SINE Alu 22 120 -29 5 1349 517 143 99 0 chr11 100234850 100234941 -21608915 + B2_Mm2 SINE B2 2 101 -94 5 1349 243 296 0 188 chr11 100234975 100235052 -21608804 + B1F SINE Alu 1 66 -83 5 1349 1258 86 91 0 chr11 100235052 100235227 -21608629 + B2_Mm2 SINE B2 2 192 -3 5 1349 243 296 0 188 chr11 100235227 100235282 -21608574 + B1F SINE Alu 67 108 -41 5 1349 37 23 0 0 chr11 100236007 100236051 -21607805 + AT_rich Low_complexity Low_complexity 1 44 0 5 1349 383 103 18 77 chr11 100236098 100236266 -21607590 + (TA)n Simple_repeat Simple_repeat 2 159 0 5 1349 773 142 14 21 chr11 100236268 100236412 -21607444 - B1_Mur3 SINE Alu 0 149 7 5 1349 559 243 196 28 chr11 100236482 100236732 -21607124 - B4A SINE B4 0 292 1 5 1349 351 179 50 25 chr11 100236901 100236981 -21606875 + ID4_ SINE ID 2 83 0 5 1349 321 205 11 78 chr11 100237044 100237134 -21606722 - PB1D10 SINE Alu 0 117 34 5 1349 993 45 38 0 chr11 100237173 100237306 -21606550 - B1_Mus1 SINE Alu 0 148 11 5 1349 480 280 52 15 chr11 100237308 100237442 -21606414 - ID_B1 SINE B4 -3 221 83 5 1349 399 232 228 18 chr11 100238540 100238707 -21605149 + ID_B1 SINE B4 3 204 -20 5 1349 24 32 0 0 chr11 100238712 100238743 -21605113 + AT_rich Low_complexity Low_complexity 1 31 0 5 1349 460 220 5 42 chr11 100238759 100238871 -21604985 + PB1D10 SINE Alu 11 113 -36 5 1349 815 179 27 7 chr11 100238871 100239017 -21604839 + B1_Mur2 SINE Alu 1 149 0 5 1349 256 254 86 100 chr11 100239017 100239044 -21604812 + B1_Mur2 SINE Alu 114 147 -2 5 1349 1145 70 0 0 chr11 100239048 100239190 -21604666 + B1_Mus1 SINE Alu 1 142 -6 5 1349 328 268 89 8 chr11 100240180 100240304 -21603552 + MIRb SINE MIR 4 137 -131 5 1349 495 150 0 64 chr11 100240440 100240571 -21603285 - B3 SINE B2 -29 187 1 5 1349 315 0 0 0 chr11 100241035 100241070 -21602786 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1349 1140 62 7 0 chr11 100241070 100241214 -21602642 - B1_Mus1 SINE Alu -3 145 1 5 1349 23 33 0 0 chr11 100241335 100241365 -21602491 + AT_rich Low_complexity Low_complexity 1 30 0 5 1349 1237 61 0 0 chr11 100241365 100241512 -21602344 + B1_Mm SINE Alu 1 147 0 5 1349 1413 83 0 0 chr11 100241516 100241696 -21602160 - B2_Mm2 SINE B2 -15 180 1 5 1349 454 239 0 0 chr11 100241706 100241794 -21602062 - B3A SINE B2 -86 112 25 5 1349 293 263 140 10 chr11 100242327 100242427 -21601429 + PB1D10 SINE Alu 2 114 -3 5 1349 796 187 14 0 chr11 100242428 100242567 -21601289 + B3 SINE B2 1 141 -75 5 1349 1223 55 0 0 chr11 100242608 100242754 -21601102 - B1_Mus2 SINE Alu 0 147 2 5 1349 375 23 0 0 chr11 100243356 100243400 -21600456 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1349 801 229 152 12 chr11 100243407 100243650 -21600206 - B4 SINE B4 -15 277 1 5 1349 819 196 0 13 chr11 100243669 100243819 -21600037 - B1_Mur2 SINE Alu 0 149 2 5 1349 314 320 0 0 chr11 100245282 100245357 -21598499 - ID4_ SINE ID -6 77 3 5 1349 941 218 23 28 chr11 100245373 100245590 -21598266 + B3 SINE B2 1 216 0 5 1349 321 297 35 26 chr11 100245604 100245718 -21598138 - B1F SINE Alu -34 115 1 5 1349 724 265 85 0 chr11 100245726 100245915 -21597941 + ID_B1 SINE B4 18 222 -2 5 1349 745 244 25 30 chr11 100245918 100246117 -21597739 + B3A SINE B2 1 198 0 5 1349 267 300 118 44 chr11 100246118 100246254 -21597602 - MIRb SINE MIR -6 262 117 5 1349 737 143 120 0 chr11 100247321 100247454 -21596402 + B1_Mur3 SINE Alu 1 149 0 5 1349 214 239 0 0 chr11 100248810 100248856 -21595000 - MIRm SINE MIR -103 173 128 5 1349 328 270 90 0 chr11 100249146 100249246 -21594610 + PB1D7 SINE Alu 5 113 -7 5 1349 210 246 0 47 chr11 100249547 100249611 -21594245 + C-rich Low_complexity Low_complexity 3 63 0 5 1349 252 200 16 32 chr11 100250185 100250247 -21593609 - MIRb SINE MIR -90 178 118 5 1349 999 141 220 0 chr11 100250501 100250678 -21593178 - B3 SINE B2 0 216 1 5 1349 209 33 33 0 chr11 100250686 100250716 -21593140 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1349 1023 31 78 8 chr11 100250716 100250844 -21593012 - B1_Mus1 SINE Alu -9 139 3 5 1349 183 246 0 97 chr11 100251975 100252047 -21591809 + MIR SINE MIR 74 138 -70 5 1349 1537 48 0 26 chr11 100252951 100253145 -21590711 + B2_Mm2 SINE B2 2 190 -5 5 1349 452 338 58 26 chr11 100253155 100253310 -21590546 + RSINE1 SINE B4 2 161 -4 5 1349 29 0 0 0 chr11 100253602 100253631 -21590225 + AT_rich Low_complexity Low_complexity 1 29 0 5 1349 1149 74 0 7 chr11 100253637 100253786 -21590070 + B1_Mus1 SINE Alu 1 148 0 5 1349 642 230 7 15 chr11 100254383 100254520 -21589336 + B3 SINE B2 1 136 -80 5 1349 481 188 70 40 chr11 100255486 100255586 -21588270 + ID_B1 SINE B4 25 127 -97 5 1349 404 246 0 76 chr11 100255620 100255739 -21588117 + RSINE1 SINE B4 56 165 0 5 1349 230 0 33 0 chr11 100255740 100255770 -21588086 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5 1349 631 210 65 7 chr11 100255800 100255939 -21587917 + B1F2 SINE Alu 2 148 -1 5 1349 237 155 310 0 chr11 100255947 100256005 -21587851 + ID_B1 SINE B4 147 222 -2 5 1349 355 242 123 29 chr11 100259677 100259847 -21584009 + MIRb SINE MIR 38 223 -45 5 1349 403 102 51 30 chr11 100259908 100260004 -21583852 + B1_Mur4 SINE Alu 1 112 -37 5 1349 296 298 87 0 chr11 100260056 100260160 -21583696 + RSINE1 SINE B4 49 161 -4 5 1349 207 114 0 0 chr11 100260249 100260284 -21583572 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1349 1226 42 7 0 chr11 100260286 100260430 -21583426 - B1_Mm SINE Alu 0 147 3 5 1349 534 108 0 0 chr11 100260931 100261014 -21582842 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1349 236 387 47 18 chr11 100261920 100262091 -21581765 - L3b LINE CR1 -102 380 205 5 1349 525 234 42 67 chr11 100262407 100262572 -21581284 - RSINE1 SINE B4 -1 164 4 5 1349 366 61 0 0 chr11 100262657 100262706 -21581150 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1349 378 154 0 0 chr11 100264349 100264427 -21579429 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1349 192 316 91 10 chr11 100264471 100264570 -21579286 - MIR SINE MIR -61 147 41 5 1349 664 290 90 5 chr11 100265514 100265715 -21578141 - ID_B1 SINE B4 -4 220 3 5 1349 210 312 64 11 chr11 100265864 100265958 -21577898 + MIR SINE MIR 94 192 -70 5 1349 206 291 95 19 chr11 100266124 100266229 -21577627 + MIR SINE MIR 35 147 -61 5 1349 1070 195 34 34 chr11 100266495 100266702 -21577154 - B3 SINE B2 -7 209 3 5 1349 1156 114 22 0 chr11 100266815 100266999 -21576857 - B2_Mm2 SINE B2 -6 189 2 5 1349 211 292 0 15 chr11 100267176 100267242 -21576614 + CT-rich Low_complexity Low_complexity 5 69 0 5 1349 270 336 10 0 chr11 100267849 100267953 -21575903 + (CA)n Simple_repeat Simple_repeat 1 105 0 5 1349 381 193 57 0 chr11 100268034 100268122 -21575734 - PB1D9 SINE Alu 0 120 28 5 1349 282 365 32 45 chr11 100268129 100268284 -21575572 + L2a LINE L2 3273 3425 -1 6 1349 219 36 0 0 chr11 100268993 100269021 -21574835 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1349 1186 68 0 7 chr11 100269021 100269169 -21574687 - B1_Mus1 SINE Alu 0 148 2 6 168 649 236 49 14 chr11 100270076 100270218 -21573638 - B1_Mur1 SINE Alu 0 149 3 6 1350 681 203 63 35 chr11 100270218 100270361 -21573495 - B1_Mur1 SINE Alu -2 147 1 6 1350 252 0 0 0 chr11 100270995 100271023 -21572833 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 6 1350 219 344 112 41 chr11 100271472 100271642 -21572214 - MIRb SINE MIR -21 247 66 6 1350 497 181 0 0 chr11 100271763 100271846 -21572010 + B3 SINE B2 48 130 -86 6 1350 306 0 0 0 chr11 100271883 100271917 -21571939 + (TAA)n Simple_repeat Simple_repeat 2 35 0 6 1350 413 312 89 0 chr11 100272589 100272746 -21571110 + MER117 DNA MER1_type 27 197 0 6 1350 275 0 0 28 chr11 100272792 100272828 -21571028 + (GGGTG)n Simple_repeat Simple_repeat 3 37 0 6 1350 22 35 0 0 chr11 100272977 100273006 -21570850 + AT_rich Low_complexity Low_complexity 1 29 0 6 1350 282 29 0 0 chr11 100274340 100274375 -21569481 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1350 795 193 30 0 chr11 100274539 100274674 -21569182 - B1_Mur3 SINE Alu -6 143 5 6 1350 306 0 0 0 chr11 100275145 100275179 -21568677 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1350 342 0 0 0 chr11 100276589 100276627 -21567229 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1350 184 260 13 76 chr11 100278336 100278415 -21565441 + MIRb SINE MIR 122 195 -73 6 1350 751 157 107 0 chr11 100278576 100278697 -21565159 - B1_Mur4 SINE Alu -14 136 3 6 1350 586 251 147 5 chr11 100278813 100278997 -21564859 - B3 SINE B2 -6 210 1 6 1350 503 196 149 0 chr11 100279001 100279108 -21564748 - B1_Mur2 SINE Alu -9 140 18 6 1350 1087 65 65 0 chr11 100279109 100279247 -21564609 + B1_Mus1 SINE Alu 2 148 0 6 1350 261 0 0 0 chr11 100279250 100279279 -21564577 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1350 823 155 88 94 chr11 100279454 100279510 -21564346 + B3 SINE B2 6 64 -152 6 1350 249 57 0 0 chr11 100279519 100279554 -21564302 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1350 1548 63 0 5 chr11 100279554 100279734 -21564122 - B2_Mm1a SINE B2 -13 180 1 6 1350 823 155 88 94 chr11 100279734 100279869 -21563987 + B3 SINE B2 65 196 -20 6 1350 258 32 0 0 chr11 100279869 100279900 -21563956 + (CATA)n Simple_repeat Simple_repeat 2 32 0 6 1350 459 83 162 0 chr11 100279900 100280001 -21563855 - B2_Mm2 SINE B2 -9 184 47 6 1350 1306 97 23 0 chr11 100280048 100280224 -21563632 - B2_Mm2 SINE B2 -14 181 2 6 1350 329 241 35 35 chr11 100280283 100280369 -21563487 + PB1D9 SINE Alu 17 102 -18 6 1350 545 232 14 22 chr11 100280292 100280421 -21563435 + ID_B1 SINE B4 105 235 -57 6 1350 242 343 56 73 chr11 100280421 100280600 -21563256 + B3A SINE B2 3 178 -20 6 1350 1708 26 0 0 chr11 100280691 100280883 -21562973 + B2_Mm1a SINE B2 2 193 0 6 1350 224 346 12 25 chr11 100281058 100281138 -21562718 + ID4 SINE ID 4 82 -1 6 1350 25 51 0 0 chr11 100281366 100281405 -21562451 + AT_rich Low_complexity Low_complexity 1 39 0 6 1350 714 215 37 0 chr11 100281405 100281540 -21562316 - B1_Mur3 SINE Alu -8 141 2 6 1350 203 298 18 0 chr11 100281915 100281972 -21561884 - MIRc SINE MIR -128 140 83 6 1350 216 296 13 53 chr11 100282688 100282763 -21561093 + MER91A DNA Tip100 9 80 -116 6 1350 734 263 6 18 chr11 100286296 100286466 -21557390 - B3 SINE B2 -21 195 28 6 1350 1314 96 37 5 chr11 100286488 100286677 -21557179 - B2_Mm2 SINE B2 0 195 1 6 1350 1010 251 20 0 chr11 100286684 100286883 -21556973 - B3 SINE B2 -7 209 7 6 1350 404 222 101 0 chr11 100286892 100286991 -21556865 - B1_Mus1 SINE Alu -5 143 35 6 1350 562 231 207 36 chr11 100287035 100287228 -21556628 - B4A SINE B4 -65 227 2 6 1350 982 223 154 39 chr11 100287892 100288224 -21555632 + ORR1D1 LTR MaLR 1 370 -4 6 1350 214 269 119 0 chr11 100288682 100288749 -21555107 + MIRb SINE MIR 51 125 -143 6 1350 1306 34 0 0 chr11 100289022 100289170 -21554686 - B1_Mus1 SINE Alu 0 148 1 6 1350 1166 198 14 9 chr11 100289276 100289490 -21554366 + B3 SINE B2 2 216 0 6 1350 1161 95 0 0 chr11 100289504 100289651 -21554205 + B1_Mus1 SINE Alu 2 148 0 6 1350 189 171 0 0 chr11 100289985 100290020 -21553836 + GA-rich Low_complexity Low_complexity 1 35 0 6 1350 809 131 95 0 chr11 100290542 100290679 -21553177 - B1_Mur4 SINE Alu 0 150 1 6 1350 327 237 0 62 chr11 100290768 100290849 -21553007 - ID4 SINE ID -6 77 2 6 1350 451 257 36 119 chr11 100291658 100291676 -21552180 + B4A SINE B4 68 71 -221 6 1350 888 173 0 6 chr11 100291676 100291832 -21552024 + B1_Mur4 SINE Alu 1 150 0 6 1350 213 39 0 0 chr11 100291832 100291858 -21551998 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 6 1350 270 0 0 0 chr11 100291978 100292008 -21551848 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1350 468 333 30 8 chr11 100292057 100292190 -21551666 + ID_B1 SINE B4 78 213 -11 6 1350 297 276 84 19 chr11 100292749 100292856 -21551000 + MER58A DNA MER1_type 45 158 -66 6 1350 620 221 18 0 chr11 100292963 100293076 -21550780 - PB1D9 SINE Alu 0 120 6 6 1350 207 100 0 0 chr11 100293078 100293108 -21550748 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 6 1350 755 137 88 44 chr11 100293109 100293246 -21550610 - B1_Mur2 SINE Alu -6 143 1 6 1350 232 81 81 0 chr11 100293603 100293640 -21550216 - PB1D7 SINE Alu 0 120 81 6 1350 230 333 27 166 chr11 100293644 100293672 -21550184 + ID_B1 SINE B4 53 213 -11 6 1350 508 250 6 145 chr11 100293672 100293831 -21550025 + B1_Mur2 SINE Alu 2 138 -11 6 1350 809 107 8 0 chr11 100293831 100293962 -21549894 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 6 1350 445 252 0 63 chr11 100293976 100294103 -21549753 + PB1 SINE Alu 1 119 -8 6 1350 288 171 0 186 chr11 100294552 100294638 -21549218 - B4 SINE B4 -1 291 222 6 1350 1099 116 0 0 chr11 100294638 100294784 -21549072 - B1_Mus1 SINE Alu 0 148 3 6 1350 413 291 50 17 chr11 100294814 100294933 -21548923 - RSINE1 SINE B4 -2 163 41 6 1350 716 283 7 126 chr11 100294922 100295193 -21548663 - B4 SINE B4 -53 239 1 6 1350 358 206 14 34 chr11 100295247 100295393 -21548463 + (CA)n Simple_repeat Simple_repeat 2 144 0 6 1350 322 250 48 48 chr11 100295486 100295503 -21548353 + MT2B LTR ERVL 153 169 -432 6 1350 707 159 98 0 chr11 100295503 100295635 -21548221 + B1_Mus2 SINE Alu 3 147 0 6 1350 1016 133 0 26 chr11 100296367 100296521 -21547335 - B1_Mur4 SINE Alu 0 150 1 6 1350 442 289 92 0 chr11 100296524 100296666 -21547190 - ID_B1 SINE B4 0 224 70 6 1350 740 179 95 24 chr11 100296722 100296983 -21546873 + ORR1D1 LTR MaLR 1 364 -10 6 1350 325 289 38 19 chr11 100297834 100297940 -21545916 + PB1D10 SINE Alu 1 108 -9 6 1350 220 218 35 35 chr11 100297991 100298048 -21545808 + ID2 SINE ID 3 59 -24 6 1350 868 218 118 10 chr11 100298062 100298257 -21545599 + B3 SINE B2 1 216 0 6 1350 761 304 0 23 chr11 100298305 100298524 -21545332 + ID_B1 SINE B4 2 215 -9 6 1350 833 191 41 0 chr11 100298529 100298677 -21545179 + B3A SINE B2 2 154 -44 6 1350 486 0 0 0 chr11 100298677 100298731 -21545125 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1350 788 253 23 17 chr11 100298731 100298759 -21545097 + B3 SINE B2 154 179 -37 6 1350 489 228 26 26 chr11 100298765 100298882 -21544974 + PB1D9 SINE Alu 3 119 -1 6 1350 1066 191 23 28 chr11 100298913 100299128 -21544728 + B3 SINE B2 3 216 0 6 1350 859 114 137 0 chr11 100299744 100299875 -21543981 + B1_Mur4 SINE Alu 2 150 0 6 1350 559 296 33 77 chr11 100299887 100300070 -21543786 + ID_B1 SINE B4 50 224 0 6 1350 224 330 0 126 chr11 100300437 100300548 -21543308 + MIRc SINE MIR 90 186 -82 6 1350 587 241 157 45 chr11 100300681 100300859 -21542997 + B3A SINE B2 1 198 0 6 1350 851 147 15 7 chr11 100300999 100301136 -21542720 - B1_Mur1 SINE Alu -7 142 5 6 1350 335 180 144 12 chr11 100301156 100301251 -21542605 - B1F1 SINE Alu -35 114 8 6 1350 324 272 12 12 chr11 100302699 100302781 -21541075 + ID4_ SINE ID 1 82 -1 6 1350 289 277 0 67 chr11 100303595 100303684 -21540172 - RMER30 DNA MER1_type -112 90 8 6 1350 548 156 35 44 chr11 100303733 100303835 -21540021 + PB1D10 SINE Alu 3 105 -12 6 1350 183 42 0 0 chr11 100303835 100303859 -21539997 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1350 548 156 35 44 chr11 100303859 100303870 -21539986 + PB1D10 SINE Alu 106 115 -2 6 1350 704 261 26 26 chr11 100303910 100304099 -21539757 - B3 SINE B2 0 216 28 6 1350 251 250 82 20 chr11 100304094 100304192 -21539664 - MER58B DNA MER1_type -19 322 219 6 1350 759 116 74 8 chr11 100304210 100304332 -21539524 + B1_Mur2 SINE Alu 20 149 0 6 1350 1563 47 16 0 chr11 100304335 100304525 -21539331 + B2_Mm1t SINE B2 1 193 0 6 1350 446 213 99 99 chr11 100304560 100304742 -21539114 - MER58B DNA MER1_type -153 188 7 6 1350 229 26 53 0 chr11 100304951 100304989 -21538867 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 6 1350 875 83 61 0 chr11 100304989 100305113 -21538743 - B1_Mur4 SINE Alu -12 138 7 6 1350 297 128 0 0 chr11 100305123 100305170 -21538686 + (TCC)n Simple_repeat Simple_repeat 3 49 0 6 1350 748 177 13 64 chr11 100305179 100305336 -21538520 - B1_Mur3 SINE Alu 0 149 1 6 1350 621 266 56 0 chr11 100305352 100305495 -21538361 + RSINE1 SINE B4 13 163 -2 7 1350 378 61 0 0 chr11 100305506 100305555 -21538301 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1350 260 132 0 0 chr11 100305568 100305606 -21538250 - B1F2 SINE Alu -110 39 2 7 1350 253 195 0 0 chr11 100305570 100305611 -21538245 - B4A SINE B4 -170 122 82 7 1350 384 203 417 20 chr11 100305773 100305924 -21537932 - B3 SINE B2 -5 211 1 7 1350 198 0 0 0 chr11 100305935 100305957 -21537899 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1350 940 250 38 0 chr11 100305958 100306142 -21537714 - B3 SINE B2 -9 207 17 7 1350 1008 225 9 18 chr11 100306211 100306428 -21537428 + B4A SINE B4 2 216 -76 7 1350 203 0 0 36 chr11 100306428 100306456 -21537400 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1350 1420 59 16 11 chr11 100306460 100306647 -21537209 + B2_Mm2 SINE B2 1 188 -7 7 1350 223 311 91 77 chr11 100307296 100307439 -21536417 + L2b LINE L2 3222 3366 -9 7 1350 988 170 48 0 chr11 100307915 100308103 -21535753 - Lx4A LINE L1 -48 7010 6814 7 1350 792 256 44 0 chr11 100308136 100308316 -21535540 + B3A SINE B2 1 188 -10 7 1350 575 273 84 70 chr11 100309152 100309230 -21534626 - MER2 DNA MER2_type -37 308 228 7 1350 531 225 27 0 chr11 100309230 100309341 -21534515 + PB1D7 SINE Alu 2 115 -5 7 1350 575 273 84 70 chr11 100309341 100309475 -21534381 - MER2 DNA MER2_type -118 227 93 7 1350 578 217 83 0 chr11 100309508 100309628 -21534228 - RSINE1 SINE B4 -31 134 5 7 1350 21 36 0 0 chr11 100309633 100309661 -21534195 + AT_rich Low_complexity Low_complexity 1 28 0 7 1350 653 209 107 88 chr11 100309661 100309818 -21534038 - B3 SINE B2 -7 209 32 7 1350 745 151 27 48 chr11 100309818 100309964 -21533892 + B1_Mur2 SINE Alu 1 143 -6 7 1350 653 209 107 88 chr11 100309964 100310011 -21533845 - B3 SINE B2 -185 31 1 7 1350 425 243 48 0 chr11 100310013 100310116 -21533740 - PB1D9 SINE Alu -1 119 12 7 1350 329 247 58 12 chr11 100310045 100310131 -21533725 - B4A SINE B4 -121 171 82 7 1350 331 262 0 24 chr11 100310133 100310215 -21533641 - PB1D7 SINE Alu 0 120 41 7 1350 1222 62 0 0 chr11 100310225 100310371 -21533485 - B1_Mus2 SINE Alu 0 147 2 7 1350 290 236 0 0 chr11 100310371 100310426 -21533430 + B3A SINE B2 90 144 -54 7 1350 297 109 0 0 chr11 100310431 100310486 -21533370 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 7 1350 459 0 0 0 chr11 100310486 100310537 -21533319 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1350 1031 138 191 11 chr11 100310561 100310744 -21533112 + B3 SINE B2 1 216 0 7 1350 607 254 50 100 chr11 100310760 100310910 -21532946 - B3A SINE B2 -21 195 56 7 1350 200 59 29 0 chr11 100310910 100310944 -21532912 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1350 1052 88 7 0 chr11 100310944 100311080 -21532776 - B1_Mm SINE Alu -9 138 2 7 1350 607 247 51 85 chr11 100311080 100311144 -21532712 - B3A SINE B2 -143 55 2 7 1350 318 26 0 0 chr11 100311149 100311188 -21532668 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1350 495 33 0 0 chr11 100311193 100311254 -21532602 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1350 961 96 0 0 chr11 100311254 100311379 -21532477 - B1_Mur4 SINE Alu -16 134 10 7 1350 513 233 32 40 chr11 100311272 100311397 -21532459 - B4 SINE B4 -88 204 81 7 1350 374 283 11 0 chr11 100311426 100311518 -21532338 - RSINE1 SINE B4 0 165 73 7 1350 391 120 14 8 chr11 100311725 100311833 -21532023 - B2_Mm2 SINE B2 -2 193 47 7 1350 1271 108 11 0 chr11 100311898 100312074 -21531782 - B2_Mm1t SINE B2 -14 179 2 7 1350 558 209 74 44 chr11 100312161 100312296 -21531560 + B1_Mur2 SINE Alu 6 144 -5 7 1350 1149 82 0 7 chr11 100312297 100312444 -21531412 + B1_Mus1 SINE Alu 1 146 -2 7 1350 794 134 86 43 chr11 100312493 100312633 -21531223 + B1_Mur1 SINE Alu 2 147 -2 7 1350 880 213 40 50 chr11 100312655 100312877 -21530979 + ID_B1 SINE B4 5 224 0 7 1350 351 0 0 0 chr11 100312893 100312932 -21530924 + (TA)n Simple_repeat Simple_repeat 1 39 0 7 1350 809 241 101 35 chr11 100312948 100313146 -21530710 + B4 SINE B4 8 218 -74 7 1350 765 226 69 64 chr11 100313170 100313373 -21530483 + B3 SINE B2 1 204 -12 7 1350 1027 46 0 8 chr11 100313452 100313584 -21530272 + B2_Mm2 SINE B2 2 132 -63 7 1350 250 271 186 0 chr11 100313751 100313821 -21530035 + B4 SINE B4 209 291 -1 7 1350 527 173 76 9 chr11 100313920 100314025 -21529831 + B3 SINE B2 5 116 -100 7 1350 2011 104 12 76 chr11 100314025 100314368 -21529488 + ORR1A4 LTR MaLR 1 321 -8 7 1350 9823 124 54 126 chr11 100314372 100314843 -21529013 + ORR1A4-int LTR MaLR 1 440 -1523 7 1350 3634 67 24 0 chr11 100314843 100315307 -21528549 + L1_Mus1 LINE L1 6093 6567 0 7 1350 9823 124 54 126 chr11 100315307 100316949 -21526907 + ORR1A4-int LTR MaLR 441 1963 0 7 1350 2121 117 16 0 chr11 100316949 100317265 -21526591 + ORR1A4 LTR MaLR 1 321 -8 7 1350 285 304 62 12 chr11 100317271 100317351 -21526505 + B3 SINE B2 113 196 -20 7 1350 1222 29 0 0 chr11 100317373 100317511 -21526345 + B1_Mus1 SINE Alu 3 140 -8 7 1350 434 221 0 0 chr11 100320360 100320437 -21523419 + ID SINE ID 2 78 -146 7 1350 334 272 0 58 chr11 100320437 100320481 -21523375 + BC1_Mm scRNA scRNA 2 115 -37 7 1350 380 238 137 77 chr11 100321021 100321203 -21522653 - B3A SINE B2 -1 197 5 7 1350 662 174 129 0 chr11 100322091 100322223 -21521633 + B1_Mur1 SINE Alu 1 149 0 7 1350 510 157 45 0 chr11 100322907 100322996 -21520860 + B1_Mur1 SINE Alu 57 149 0 7 1350 510 240 52 46 chr11 100325965 100326118 -21517738 + RSINE1 SINE B4 12 165 0 7 1350 369 305 11 0 chr11 100326132 100326227 -21517629 + PB1D10 SINE Alu 14 109 -8 7 1350 553 196 53 18 chr11 100326286 100326400 -21517456 - PB1D9 SINE Alu 0 120 3 7 1350 459 268 98 0 chr11 100326401 100326524 -21517332 - B3 SINE B2 -5 211 77 7 1350 453 331 13 69 chr11 100326492 100326651 -21517205 + B3A SINE B2 49 198 0 7 1350 1913 102 60 17 chr11 100327073 100327371 -21516485 - ORR1A4 LTR MaLR 0 329 19 7 1350 26 0 0 0 chr11 100327954 100327980 -21515876 + AT_rich Low_complexity Low_complexity 1 26 0 7 1350 1472 136 53 152 chr11 100327993 100328349 -21515507 + ORR1A4 LTR MaLR 1 321 -8 7 1350 403 184 119 3 chr11 100328422 100328521 -21515335 - PB1 SINE Alu -7 120 13 7 1350 189 0 0 0 chr11 100328750 100328771 -21515085 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 1350 347 201 84 9 chr11 100328777 100328880 -21514976 - PB1D9 SINE Alu -7 120 21 7 1350 1139 43 0 21 chr11 100329019 100329163 -21514693 - B1_Mus1 SINE Alu 0 148 8 7 1350 420 202 56 37 chr11 100329459 100329567 -21514289 - PB1D9 SINE Alu -8 112 3 7 1350 233 192 316 40 chr11 100329586 100329662 -21514194 - PB1D7 SINE Alu -11 109 13 7 1350 514 202 29 0 chr11 100330130 100330234 -21513622 - PB1D9 SINE Alu 0 120 14 7 1350 810 176 7 40 chr11 100330239 100330387 -21513469 - B1_Mus1 SINE Alu 0 148 6 7 1350 437 295 0 0 chr11 100330398 100330510 -21513346 - PB1D10 SINE Alu -5 112 1 7 1350 986 214 47 0 chr11 100330558 100330750 -21513106 - B3 SINE B2 -15 201 1 7 1350 903 228 23 36 chr11 100330975 100331194 -21512662 - B3 SINE B2 0 216 1 7 1350 227 262 36 72 chr11 100331202 100331313 -21512543 - PB1D10 SINE Alu -6 111 5 7 1350 230 304 59 59 chr11 100331379 100331411 -21512445 - ID_B1 SINE B4 -4 220 102 7 1350 414 200 92 23 chr11 100331411 100331498 -21512358 - B1_Mur1 SINE Alu -36 113 21 7 1350 202 322 174 71 chr11 100331517 100331571 -21512285 + L2a LINE L2 2516 2575 -844 7 1350 816 130 50 7 chr11 100331571 100331710 -21512146 + B1_Mus1 SINE Alu 2 146 -2 7 1350 202 322 174 71 chr11 100331710 100331775 -21512081 + L2a LINE L2 2576 2641 -778 7 1350 586 194 308 25 chr11 100331775 100331934 -21511922 + B3 SINE B2 2 205 -11 7 1350 202 322 174 71 chr11 100331934 100332037 -21511819 + L2a LINE L2 2642 2761 -658 7 1350 1124 153 94 0 chr11 100332157 100332360 -21511496 + URR1A DNA MER1_type 5 226 0 7 1350 412 155 0 14 chr11 100332548 100332620 -21511236 + B1_Mur2 SINE Alu 78 148 -1 7 1350 267 324 0 36 chr11 100332737 100332849 -21511007 + L2a LINE L2 3313 3420 -6 7 1350 21 57 0 0 chr11 100332951 100332986 -21510870 + AT_rich Low_complexity Low_complexity 1 35 0 7 1350 246 190 0 33 chr11 100333995 100334055 -21509801 + (CCG)n Simple_repeat Simple_repeat 1 58 0 7 1350 329 141 102 16 chr11 100334341 100334417 -21509439 - B1_Mur4 SINE Alu -1 119 31 7 1350 630 137 129 0 chr11 100334411 100334535 -21509321 + B1_Mur4 SINE Alu 11 150 0 7 1350 559 277 92 38 chr11 100334558 100334742 -21509114 - B3A SINE B2 -3 195 2 7 1350 461 238 99 38 chr11 100334781 100334912 -21508944 - ID_B1 SINE B4 0 224 86 7 1350 229 26 26 26 chr11 100334914 100334953 -21508903 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1350 1185 51 0 0 chr11 100334953 100335090 -21508766 - B1_Mus1 SINE Alu -10 138 2 7 1350 1261 27 7 0 chr11 100335133 100335279 -21508577 + B1_Mus2 SINE Alu 1 147 0 7 1350 186 43 0 0 chr11 100335504 100335527 -21508329 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1350 618 130 10 10 chr11 100335529 100335630 -21508226 - B1_Mur4 SINE Alu -13 137 37 7 1350 272 164 79 32 chr11 100335575 100335638 -21508218 - 4.5SRNA scRNA scRNA -8 86 21 7 1350 293 264 42 42 chr11 100335700 100335795 -21508061 + PB1D10 SINE Alu 12 106 -11 7 1350 479 195 43 11 chr11 100335857 100335968 -21507888 + B1_Mus2 SINE Alu 38 146 -2 7 1350 1247 54 0 0 chr11 100335970 100336117 -21507739 + B1_Mus2 SINE Alu 1 147 0 7 1350 220 303 54 43 chr11 100336428 100336521 -21507335 - L2 LINE L2 -840 2579 2486 7 1350 1083 44 65 14 chr11 100336806 100336944 -21506912 - B1_Mus2 SINE Alu -1 146 2 7 1350 1383 76 11 5 chr11 100336971 100337156 -21506700 + B2_Mm1t SINE B2 1 186 -7 7 1350 503 280 39 32 chr11 100337167 100337322 -21506534 - B3A SINE B2 -38 160 5 8 1350 491 248 112 8 chr11 100337329 100337463 -21506393 - B1_Mur1 SINE Alu 0 149 2 8 1350 263 241 149 75 chr11 100337387 100337481 -21506375 - MT2B LTR ERVL -361 240 140 8 1350 24 32 0 0 chr11 100338186 100338217 -21505639 + AT_rich Low_complexity Low_complexity 1 31 0 8 1350 312 268 0 53 chr11 100338751 100338826 -21505030 + ID2 SINE ID 2 72 -11 8 1350 1209 58 0 0 chr11 100338855 100339026 -21504830 + (CA)n Simple_repeat Simple_repeat 2 172 0 8 1350 762 146 117 7 chr11 100339816 100339961 -21503895 + RLTR12B LTR ERVK 1 161 -367 8 1350 370 316 59 83 chr11 100339993 100340162 -21503694 + MTEa LTR MaLR 24 188 -191 8 1350 220 221 49 61 chr11 100340318 100340336 -21503520 + PB1D9 SINE Alu 40 119 0 8 1350 258 254 16 0 chr11 100340336 100340399 -21503457 + ID_B1 SINE B4 161 224 0 8 1350 583 205 71 0 chr11 100341128 100341255 -21502601 + MTD LTR MaLR 1 136 -283 8 1350 594 221 14 14 chr11 100341252 100341390 -21502466 + MTD LTR MaLR 277 414 -5 8 1350 802 183 42 0 chr11 100341390 100341532 -21502324 + B1_Mur3 SINE Alu 1 148 -1 8 1350 1329 71 32 32 chr11 100341822 100342011 -21501845 + B2_Mm1t SINE B2 1 189 -4 8 1350 222 229 42 0 chr11 100342019 100342067 -21501789 + RSINE1 SINE B4 3 52 -113 8 1350 21 0 0 0 chr11 100342119 100342140 -21501716 + GC_rich Low_complexity Low_complexity 1 21 0 8 1350 662 215 129 12 chr11 100342462 100342653 -21501203 - B3 SINE B2 0 195 2 8 1350 327 194 16 0 chr11 100343354 100343416 -21500440 + RCHARR1 DNA MER1_type 82 144 -830 8 1350 439 216 41 0 chr11 100343770 100343867 -21499989 + PB1D9 SINE Alu 1 101 -19 8 1350 261 0 0 0 chr11 100343873 100343902 -21499954 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 1350 300 186 0 0 chr11 100343900 100343959 -21499897 + A-rich Low_complexity Low_complexity 1 59 0 8 1350 1008 154 7 0 chr11 100344224 100344373 -21499483 + B1_Mur4 SINE Alu 1 150 0 8 1350 361 198 16 24 chr11 100344373 100344497 -21499359 + GA-rich Low_complexity Low_complexity 2 124 0 8 1350 313 109 0 0 chr11 100344501 100344547 -21499309 - ID_B1 SINE B4 -66 158 113 8 1350 556 160 170 0 chr11 100344746 100344846 -21499010 + B1_Mus2 SINE Alu 1 117 -30 8 1350 240 35 0 0 chr11 100345449 100345478 -21498378 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1350 957 129 0 0 chr11 100345479 100345618 -21498238 - B1_Mur4 SINE Alu -10 140 2 8 1350 367 339 79 42 chr11 100346109 100346354 -21497502 - MIRb SINE MIR -10 252 1 8 1350 1234 68 0 0 chr11 100346484 100346632 -21497224 + B1_Mus1 SINE Alu 1 148 0 8 1350 262 236 0 0 chr11 100346783 100346838 -21497018 + RSINE1 SINE B4 1 55 -110 8 1350 334 194 0 16 chr11 100347312 100347375 -21496481 - PB1 SINE Alu -20 107 46 8 1350 561 268 75 52 chr11 100347563 100347736 -21496120 - B3 SINE B2 -10 206 30 8 1350 666 154 114 8 chr11 100347935 100348066 -21495790 + B1_Mus2 SINE Alu 1 145 -2 8 1350 289 139 0 37 chr11 100348560 100348642 -21495214 + (CAGA)n Simple_repeat Simple_repeat 4 82 0 8 1350 2481 88 25 0 chr11 100348749 100349068 -21494788 + ORR1A2 LTR MaLR 1 327 0 8 1350 10495 136 70 38 chr11 100349069 100350076 -21493780 + ORR1A2-int LTR MaLR 2 1077 -886 8 1350 1234 41 0 27 chr11 100350076 100350226 -21493630 - B1_Mm SINE Alu 0 147 2 8 1350 10495 136 70 38 chr11 100350226 100351001 -21492855 + ORR1A2-int LTR MaLR 1078 1849 -114 8 1350 864 105 137 0 chr11 100351001 100351125 -21492731 + B1_Mus1 SINE Alu 1 141 -7 8 1350 213 39 0 0 chr11 100351125 100351151 -21492705 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1350 10495 136 70 38 chr11 100351151 100351267 -21492589 + ORR1A2-int LTR MaLR 1850 1962 -1 8 1350 1763 116 84 29 chr11 100351267 100351577 -21492279 + ORR1A2 LTR MaLR 1 327 0 8 1350 887 247 111 41 chr11 100351766 100352036 -21491820 - B4A SINE B4 -1 291 3 8 1350 419 234 21 11 chr11 100352048 100352143 -21491713 - PB1D10 SINE Alu -21 96 1 8 1350 951 157 21 42 chr11 100352353 100352546 -21491310 + B2_Mm2 SINE B2 1 189 -6 8 1350 836 185 20 0 chr11 100353067 100353213 -21490643 - B1_Mur2 SINE Alu 0 149 1 8 1350 728 96 59 25 chr11 100353288 100353406 -21490450 - B2_Mm2 SINE B2 0 195 74 8 1350 324 0 0 0 chr11 100354313 100354349 -21489507 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 8 1350 773 227 22 62 chr11 100354364 100354589 -21489267 + B3 SINE B2 1 216 0 8 1350 2551 87 42 82 chr11 100355512 100355940 -21487916 + IAPLTR2a LTR ERVK 1 411 0 8 1350 634 225 35 35 chr11 100356259 100356402 -21487454 - B1_Mur1 SINE Alu 0 149 7 8 1350 751 241 35 40 chr11 100356431 100356630 -21487226 - B3A SINE B2 0 198 1 8 1350 583 250 135 37 chr11 100356883 100357128 -21486728 + B4A SINE B4 1 269 -23 8 1350 309 89 0 0 chr11 100357128 100357173 -21486683 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1350 182 152 208 42 chr11 100357359 100357407 -21486449 - L2 LINE L2 -2930 489 434 8 1350 814 223 6 0 chr11 100357473 100357630 -21486226 + RSINE1 SINE B4 2 159 -6 8 1350 231 274 89 56 chr11 100357923 100358098 -21485758 - Cheshire DNA MER1_type -2179 241 17 8 1350 207 0 0 0 chr11 100358199 100358222 -21485634 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1350 276 290 159 0 chr11 100358413 100358520 -21485336 + B4 SINE B4 76 199 -93 8 1350 482 219 28 19 chr11 100358430 100358537 -21485319 + PB1D9 SINE Alu 13 120 0 8 1350 1437 134 144 47 chr11 100358659 100358957 -21484899 + ORR1A4 LTR MaLR 3 329 0 8 1350 292 232 57 14 chr11 100359183 100359253 -21484603 - ID4 SINE ID -9 74 2 8 1350 1130 181 24 10 chr11 100360497 100360704 -21483152 - B3 SINE B2 -6 210 1 8 1350 759 231 0 0 chr11 100360707 100360854 -21483002 - B1_Mur1 SINE Alu -1 148 2 8 1350 723 257 47 33 chr11 100360870 100361083 -21482773 - B3 SINE B2 0 216 1 8 1350 558 260 31 39 chr11 100361092 100361220 -21482636 - ID_B1 SINE B4 -7 217 91 8 1350 448 252 140 0 chr11 100361246 100361353 -21482503 - B1F SINE Alu -27 122 1 8 1350 29 0 0 0 chr11 100361354 100361383 -21482473 + AT_rich Low_complexity Low_complexity 1 29 0 8 1350 774 164 62 8 chr11 100361383 100361512 -21482344 - B1_Mus1 SINE Alu -3 145 10 8 1350 225 228 33 132 chr11 100361870 100361883 -21481973 + MT2B LTR ERVL 152 233 -368 8 1350 317 299 0 13 chr11 100361883 100361961 -21481895 + B1_Mur3 SINE Alu 2 78 -71 8 1350 730 194 11 81 chr11 100362920 100363094 -21480762 + B3A SINE B2 1 162 -36 8 1350 1264 102 17 0 chr11 100363160 100363337 -21480519 + B2_Mm1t SINE B2 1 180 -13 8 1350 270 156 0 22 chr11 100363405 100363451 -21480405 + B2_Mm2 SINE B2 47 91 -104 8 1350 24 0 0 0 chr11 100363465 100363489 -21480367 + AT_rich Low_complexity Low_complexity 1 24 0 8 1350 316 246 0 28 chr11 100363625 100363696 -21480160 + ID4 SINE ID 15 83 0 8 1350 315 243 0 41 chr11 100365714 100365787 -21478069 - PB1D7 SINE Alu -5 115 46 8 1350 300 310 108 8 chr11 100365882 100366012 -21477844 - MIRb SINE MIR -117 151 9 8 1350 727 184 37 0 chr11 100366841 100366977 -21476879 - B1_Mur1 SINE Alu -7 142 2 8 1350 858 212 77 74 chr11 100367232 100367517 -21476339 + RLTR15 LTR ERVK 1 286 -73 8 1350 336 223 20 24 chr11 100367528 100367653 -21476203 + RMER19C LTR ERVK 327 412 -199 8 1350 336 287 23 0 chr11 100367652 100367739 -21476117 + ID_B1 SINE B4 135 223 -1 8 1350 386 333 8 41 chr11 100367744 100367866 -21475990 + B1F SINE Alu 3 120 -29 8 1350 1329 126 16 0 chr11 100368495 100368686 -21475170 + B2_Mm2 SINE B2 2 195 0 8 1350 1517 43 43 0 chr11 100368718 100368903 -21474953 + B2_Mm2 SINE B2 1 193 -2 8 1350 1345 82 49 0 chr11 100369085 100369269 -21474587 + B2_Mm2 SINE B2 3 195 0 8 1350 968 121 21 7 chr11 100369380 100369522 -21474334 + B1_Mur4 SINE Alu 1 144 -6 8 1350 225 0 0 0 chr11 100369523 100369548 -21474308 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 8 1350 456 265 7 83 chr11 100369698 100369842 -21474014 + MurERV4-int LTR ERVK 4519 4651 -609 8 1350 307 185 37 0 chr11 100369853 100369907 -21473949 + RMER2 LTR ERV1 1 56 -511 8 1350 685 261 142 52 chr11 100369874 100370241 -21473615 + RMER2 LTR ERV1 168 567 0 8 1350 4220 256 130 123 chr11 100370245 100370338 -21473518 + MYSERV-int LTR ERVK 3890 3983 -2567 8 1350 1248 55 0 0 chr11 100370338 100370484 -21473372 + B1_Mus2 SINE Alu 2 147 0 8 1350 4220 255 122 111 chr11 100370484 100371922 -21471934 + MYSERV-int LTR ERVK 3984 5361 -1189 8 1350 762 168 42 0 chr11 100371922 100372065 -21471791 - B1_Mur2 SINE Alu 0 149 1 8 1350 4249 198 77 21 chr11 100372065 100373175 -21470681 + MYSERV6-int LTR ERVK 7787 8958 -1 8 1350 966 186 45 29 chr11 100373179 100373422 -21470434 + RLTR15 LTR ERVK 4 250 -109 8 1350 196 304 71 0 chr11 100373792 100373848 -21470008 + L2b LINE L2 3309 3368 -7 8 1350 958 198 60 10 chr11 100373953 100374152 -21469704 + B3 SINE B2 4 212 -4 8 1350 202 237 24 84 chr11 100375591 100375674 -21468182 + L3 LINE CR1 932 1009 -3480 8 1350 486 0 0 0 chr11 100375855 100375909 -21467947 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1350 234 233 49 16 chr11 100376494 100376555 -21467301 - LTR16D1 LTR ERVL -492 183 121 8 1350 246 32 0 0 chr11 100378535 100378566 -21465290 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1350 1198 48 0 20 chr11 100378571 100378720 -21465136 + B1_Mm SINE Alu 1 146 -1 8 1350 302 264 0 125 chr11 100378881 100378985 -21464871 + RSINE1 SINE B4 75 165 0 8 1350 21 36 0 0 chr11 100379005 100379033 -21464823 + AT_rich Low_complexity Low_complexity 1 28 0 8 1350 498 292 67 67 chr11 100379038 100379247 -21464609 + B3A SINE B2 8 216 0 8 1350 390 209 10 62 chr11 100379277 100379374 -21464482 + ID_B1 SINE B4 128 219 -5 8 1350 1342 79 0 69 chr11 100379999 100380203 -21463653 + B2_Mm2 SINE B2 2 191 -4 9 1350 435 308 42 0 chr11 100381862 100382005 -21461851 - RSINE1 SINE B4 -14 151 3 9 1350 587 195 250 17 chr11 100383981 100384153 -21459703 - B3 SINE B2 0 216 5 9 1350 826 132 43 22 chr11 100384229 100384368 -21459488 - B1_Mus2 SINE Alu 0 147 6 9 1350 491 325 101 10 chr11 100384389 100384588 -21459268 - MIR SINE MIR -14 248 32 9 1350 397 306 27 9 chr11 100385174 100385286 -21458570 + PB1D10 SINE Alu 3 116 -1 9 1350 412 244 0 12 chr11 100385911 100385994 -21457862 + ID4 SINE ID 1 82 -1 9 1350 189 279 42 95 chr11 100387191 100387286 -21456570 + L3 LINE CR1 3826 3915 -574 9 1350 983 37 80 7 chr11 100390484 100390621 -21453235 - B1_Mus2 SINE Alu 0 147 1 9 1350 451 281 0 26 chr11 100390862 100390979 -21452877 - ID_B1 SINE B4 -2 222 109 9 1350 330 310 45 30 chr11 100390979 100390991 -21452865 - B1_Mur2 SINE Alu -1 144 14 9 1350 299 367 26 32 chr11 100391066 100391221 -21452635 + RSINE1 SINE B4 12 165 0 9 1350 220 191 24 0 chr11 100391248 100391290 -21452566 + B1_Mur4 SINE Alu 50 92 -58 9 1350 651 179 112 0 chr11 100391326 100391460 -21452396 + B1_Mur3 SINE Alu 1 149 0 9 1350 1253 123 22 14 chr11 100391518 100391741 -21452115 - URR1A DNA MER1_type 0 226 2 9 1350 283 253 112 31 chr11 100391754 100391852 -21452004 + PB1 SINE Alu 22 127 0 9 1350 1013 176 25 20 chr11 100391854 100392057 -21451799 + B3 SINE B2 1 204 -12 9 1350 867 158 7 7 chr11 100392090 100392237 -21451619 + B1_Mus1 SINE Alu 1 147 -1 9 1350 217 140 17 17 chr11 100392238 100392296 -21451560 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 9 1350 1510 143 224 3 chr11 100392390 100392685 -21451171 + RMER1B Other Other 558 917 -149 9 1350 303 143 0 0 chr11 100392688 100392730 -21451126 + RMER1B Other Other 876 917 -149 9 1350 327 137 0 0 chr11 100392759 100392810 -21451046 + RMER1A Other Other 805 855 -175 9 1350 733 162 119 17 chr11 100392842 100393018 -21450838 + RMER1B Other Other 870 1063 -3 9 1350 258 275 12 24 chr11 100393110 100393192 -21450664 + L2a LINE L2 3340 3420 -6 9 1350 2203 94 21 59 chr11 100393275 100393615 -21450241 - ORR1A2 LTR MaLR 0 327 1 9 1350 317 229 125 62 chr11 100393649 100393761 -21450095 + PB1D9 SINE Alu 1 119 -1 9 1350 627 185 23 8 chr11 100394083 100394214 -21449642 - B1_Mur1 SINE Alu 0 149 17 9 1350 2197 106 18 58 chr11 100394344 100394725 -21449131 - ORR1C1 LTR MaLR -10 368 3 9 1350 4252 204 48 29 chr11 100394729 100395670 -21448186 - ORR1C1-int LTR MaLR -2 1368 403 9 1350 2601 61 0 0 chr11 100395670 100395997 -21447859 - ORR1A2 LTR MaLR 0 327 1 9 1350 4252 205 51 34 chr11 100395997 100396059 -21447797 - ORR1C1-int LTR MaLR -968 402 351 9 1350 270 0 0 0 chr11 100396059 100396089 -21447767 + (TTA)n Simple_repeat Simple_repeat 3 32 0 9 1350 4164 217 86 88 chr11 100396089 100396464 -21447392 - ORR1C1-int LTR MaLR -1006 503 112 9 1350 1071 80 0 0 chr11 100396464 100396602 -21447254 + B1_Mus1 SINE Alu 1 138 -10 9 1350 4164 217 86 88 chr11 100396602 100396731 -21447125 - ORR1C1-int LTR MaLR -1398 111 1 9 1350 354 86 17 0 chr11 100396735 100396792 -21447064 - B1_Mm SINE Alu 0 147 90 9 1350 2145 130 15 66 chr11 100396792 100397127 -21446729 - ORR1C1 LTR MaLR -2 376 60 9 1350 2478 195 156 19 chr11 100397127 100397775 -21446081 + RMER19A LTR ERVK 1 737 0 9 1350 2145 130 15 66 chr11 100397775 100397835 -21446021 - ORR1C1 LTR MaLR -319 59 1 9 1350 425 248 110 0 chr11 100398057 100398166 -21445690 + B1F2 SINE Alu 29 149 0 9 1350 232 250 163 0 chr11 100398189 100398281 -21445575 + B3 SINE B2 106 212 -4 9 1350 311 274 41 0 chr11 100398303 100398376 -21445480 + PB1D10 SINE Alu 1 76 -41 9 1350 389 321 14 28 chr11 100398392 100398475 -21445381 + ID_B1 SINE B4 27 107 -117 9 1350 1337 64 32 11 chr11 100398475 100398665 -21445191 + B2_Mm2 SINE B2 2 195 0 9 1350 389 321 14 28 chr11 100398665 100398722 -21445134 + ID_B1 SINE B4 108 165 -59 9 1350 575 68 0 0 chr11 100399471 100399544 -21444312 + tRNA-Phe-TTY tRNA tRNA 1 73 -3 9 1350 1015 134 0 11 chr11 100399706 100399887 -21443969 + (GAA)n Simple_repeat Simple_repeat 2 180 0 9 1350 238 294 32 21 chr11 100399896 100399990 -21443866 + RSINE1 SINE B4 16 110 -55 9 1350 345 320 67 13 chr11 100400071 100400220 -21443636 + RSINE1 SINE B4 3 159 -6 9 1350 207 100 0 0 chr11 100400228 100400258 -21443598 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 9 1350 332 214 95 0 chr11 100400324 100400408 -21443448 - MTEb LTR MaLR -11 368 277 9 1350 532 267 132 27 chr11 100400833 100401091 -21442765 + B4A SINE B4 8 292 0 9 1351 365 305 72 18 chr11 100401224 100401391 -21442465 + L1M5 LINE L1 5534 5709 -531 9 1351 475 255 0 0 chr11 100401550 100401648 -21442208 + PB1D7 SINE Alu 13 110 -10 9 1351 261 342 50 25 chr11 100401555 100401675 -21442181 + ID_B1 SINE B4 99 221 -3 9 1351 398 276 15 21 chr11 100401690 100401865 -21441991 + L1M4 LINE L1 5257 5437 -2348 9 1351 398 296 8 34 chr11 100401871 100401990 -21441866 + PB1D10 SINE Alu 1 116 -1 9 1351 684 0 0 0 chr11 100402090 100402166 -21441690 + (TC)n Simple_repeat Simple_repeat 2 77 0 9 1351 719 196 7 0 chr11 100402170 100402308 -21441548 - B1_Mur3 SINE Alu -6 143 5 9 1351 566 0 29 0 chr11 100402591 100402660 -21441196 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 9 1351 724 204 36 86 chr11 100402702 100402922 -21440934 + B3 SINE B2 3 211 -5 9 1351 300 263 77 42 chr11 100402967 100403056 -21440800 + B1F SINE Alu 1 96 -53 9 1351 360 0 0 0 chr11 100403056 100403096 -21440760 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1351 300 263 77 42 chr11 100403096 100403149 -21440707 + B1F SINE Alu 97 148 -1 9 1351 670 278 31 5 chr11 100403163 100403358 -21440498 + ID_B1 SINE B4 11 210 -14 9 1351 235 319 11 0 chr11 100403636 100403657 -21440199 + ID SINE ID 2 61 -163 9 1351 248 246 16 0 chr11 100403657 100403718 -21440138 + ID4 SINE ID 22 83 0 9 1351 283 274 25 101 chr11 100403767 100403966 -21439890 - L1ME1 LINE L1 -73 6106 5923 9 1351 450 0 0 0 chr11 100404275 100404325 -21439531 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 1351 454 207 0 0 chr11 100404326 100404408 -21439448 + B3 SINE B2 4 85 -131 9 1351 342 0 0 0 chr11 100404413 100404451 -21439405 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1351 470 290 29 7 chr11 100404536 100404675 -21439181 - B3A SINE B2 -55 143 2 9 1351 240 35 0 0 chr11 100404742 100404771 -21439085 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1351 1213 41 0 0 chr11 100404771 100404918 -21438938 - B1_Mus2 SINE Alu 0 147 1 9 1351 225 278 97 58 chr11 100404944 100405047 -21438809 - PB1D10 SINE Alu -1 116 10 9 1351 1368 59 16 5 chr11 100405123 100405309 -21438547 + B2_Mm2 SINE B2 2 189 -6 9 1351 1055 89 0 14 chr11 100405316 100405454 -21438402 + B1_Mus1 SINE Alu 1 138 -10 9 1351 216 0 0 0 chr11 100405454 100405478 -21438378 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1351 504 233 41 8 chr11 100405568 100405689 -21438167 - B1F1 SINE Alu -10 139 15 9 1351 456 261 48 27 chr11 100405810 100405956 -21437900 - B1_Mur1 SINE Alu 0 149 1 9 1351 631 152 9 0 chr11 100405994 100406099 -21437757 + B3 SINE B2 2 107 -109 9 1351 290 98 20 0 chr11 100406181 100406232 -21437624 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1351 387 306 48 14 chr11 100406266 100406412 -21437444 - B4 SINE B4 -139 153 3 9 1351 230 293 56 48 chr11 100406516 100406708 -21437148 - MIRc SINE MIR -55 213 17 9 1351 264 235 0 39 chr11 100407259 100407361 -21436495 + CT-rich Low_complexity Low_complexity 2 99 0 9 1351 241 213 0 0 chr11 100407386 100407433 -21436423 - PB1D7 SINE Alu -6 114 68 9 1351 764 285 1 9 chr11 100407615 100407796 -21436060 - B3 SINE B2 -38 178 1 9 1351 490 175 201 71 chr11 100407835 100408019 -21435837 - B3 SINE B2 -8 208 1 9 1351 301 291 29 66 chr11 100408441 100408577 -21435279 - MIR SINE MIR -99 163 33 9 1351 590 292 57 14 chr11 100408634 100408846 -21435010 + ID_B1 SINE B4 2 222 -2 9 1351 644 36 12 0 chr11 100408955 100409038 -21434818 + (TTCC)n Simple_repeat Simple_repeat 4 87 0 9 1351 647 215 7 43 chr11 100409038 100409179 -21434677 - B1_Mus2 SINE Alu -11 136 1 9 1351 517 221 65 14 chr11 100409197 100409335 -21434521 + B1F SINE Alu 5 149 0 9 1351 539 294 7 7 chr11 100409814 100409951 -21433905 + ID_B1 SINE B4 82 218 -6 9 1351 327 146 0 0 chr11 100410274 100410329 -21433527 + (GGA)n Simple_repeat Simple_repeat 3 57 0 9 1351 316 257 0 175 chr11 100410354 100410549 -21433307 + B1_Mur1 SINE Alu 1 147 -2 9 1351 392 0 21 0 chr11 100412575 100412623 -21431233 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 9 1351 808 29 0 0 chr11 100412624 100412727 -21431129 - B1_Mus2 SINE Alu -12 135 33 9 1351 640 218 0 43 chr11 100413239 100413378 -21430478 + B1_Mur2 SINE Alu 12 144 -5 9 1351 1228 27 0 0 chr11 100413617 100413764 -21430092 + B1_Mm SINE Alu 1 147 0 9 1351 198 91 0 0 chr11 100413764 100413797 -21430059 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1351 248 325 42 17 chr11 100413977 100414096 -21429760 - MIR3 SINE MIR -38 170 49 9 1351 231 36 0 0 chr11 100415628 100415656 -21428200 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 9 1351 181 286 76 25 chr11 100415993 100416072 -21427784 + MIR3 SINE MIR 74 156 -52 9 1351 302 147 0 17 chr11 100416136 100416201 -21427655 + ID4 SINE ID 2 65 -18 9 1351 674 156 26 23 chr11 100416270 100416588 -21427268 + (CA)n Simple_repeat Simple_repeat 1 319 0 9 1351 27 0 0 0 chr11 100416715 100416742 -21427114 + AT_rich Low_complexity Low_complexity 1 27 0 9 1351 481 214 107 33 chr11 100416760 100416910 -21426946 - RSINE1 SINE B4 -4 161 1 9 1351 233 260 53 27 chr11 100417052 100417127 -21426729 - ORR1E LTR MaLR -275 84 8 1 1351 200 35 35 0 chr11 100417188 100417217 -21426639 + (TCCG)n Simple_repeat Simple_repeat 3 32 0 1 1351 1092 57 0 0 chr11 100417545 100417686 -21426170 + B1_Mus2 SINE Alu 1 141 -6 1 1351 25 0 0 0 chr11 100417686 100417711 -21426145 + AT_rich Low_complexity Low_complexity 1 25 0 1 1351 448 264 119 17 chr11 100417746 100417923 -21425933 + MIRb SINE MIR 4 198 -70 1 1351 548 120 43 11 chr11 100417941 100418034 -21425822 + PB1D9 SINE Alu 25 120 0 1 1351 336 65 0 61 chr11 100418112 100418178 -21425678 - B2_Mm1a SINE B2 -5 188 127 1 1351 1138 97 16 44 chr11 100418242 100418425 -21425431 - B2_Mm2 SINE B2 -17 178 1 1 1351 347 298 26 9 chr11 100419132 100419247 -21424609 - PB1D10 SINE Alu 0 117 1 1 1351 1013 63 0 53 chr11 100419329 100419479 -21424377 - B1_Mm SINE Alu -5 142 1 1 1351 519 234 102 0 chr11 100419621 100419749 -21424107 - ID_B1 SINE B4 -1 223 83 1 1351 315 303 11 22 chr11 100419772 100419863 -21423993 - ID_B1 SINE B4 -92 132 43 1 1351 301 250 13 0 chr11 100419888 100419964 -21423892 - ID4 SINE ID -4 79 3 1 1351 654 214 20 52 chr11 100419977 100420130 -21423726 - B1_Mur1 SINE Alu 0 149 2 1 1351 267 262 25 12 chr11 100420218 100420299 -21423557 - ID4 SINE ID -1 82 1 1 1351 262 314 21 35 chr11 100421169 100421311 -21422545 + YREP_Mm Unknown Unknown 152 291 -1521 1 1351 705 208 3 13 chr11 100421194 100421336 -21422520 - ID_B1 SINE B4 -68 224 91 1 1351 445 202 23 46 chr11 100421336 100421466 -21422390 - PB1 SINE Alu 0 127 1 1 1351 280 286 49 98 chr11 100421466 100421488 -21422368 - B4A SINE B4 -201 91 70 1 1351 1189 87 38 11 chr11 100421775 100421961 -21421895 - B2_Mm1t SINE B2 0 193 3 1 1351 212 88 0 108 chr11 100422042 100422144 -21421712 + CT-rich Low_complexity Low_complexity 3 93 0 1 1351 212 229 0 0 chr11 100422375 100422423 -21421433 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1351 195 42 0 0 chr11 100422549 100422573 -21421283 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1351 323 229 29 0 chr11 100422688 100422758 -21421098 - ID4_ SINE ID -11 72 1 1 1351 254 324 36 9 chr11 100423339 100423451 -21420405 + PB1D7 SINE Alu 1 115 -5 1 1351 393 141 0 0 chr11 100423451 100423522 -21420334 + (GGA)n Simple_repeat Simple_repeat 2 72 0 1 1351 552 68 0 0 chr11 100423556 100423629 -21420227 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1351 1015 107 0 0 chr11 100423635 100423775 -21420081 - B1_Mur4 SINE Alu -6 144 5 1 1351 23 68 0 0 chr11 100423790 100423834 -21420022 + AT_rich Low_complexity Low_complexity 1 44 0 1 1351 350 298 23 31 chr11 100423894 100424022 -21419834 - RSINE1 SINE B4 -36 129 3 1 1351 307 248 50 9 chr11 100424357 100424469 -21419387 - PB1D10 SINE Alu -9 118 2 1 1351 327 272 25 0 chr11 100424538 100424619 -21419237 - ID4_ SINE ID 0 83 1 1 1351 227 157 0 19 chr11 100425140 100425192 -21418664 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1351 883 92 28 0 chr11 100425228 100425369 -21418487 - B1_Mur4 SINE Alu 0 150 6 1 1351 1453 325 113 47 chr11 100425416 100426290 -21417566 - Lx8 LINE L1 -6 7467 6536 1 1351 234 0 0 0 chr11 100426290 100426316 -21417540 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1351 672 72 7 0 chr11 100426415 100426517 -21417339 - B1_Mm SINE Alu -10 110 2 1 1351 608 169 119 0 chr11 100426517 100426632 -21417224 + B1_Mur4 SINE Alu 15 143 -7 1 1351 367 267 11 11 chr11 100426668 100426759 -21417097 + B4A SINE B4 2 92 -200 1 1351 564 162 0 0 chr11 100426935 100427040 -21416816 + (CAT)n Simple_repeat Simple_repeat 2 106 0 1 1351 1170 35 0 14 chr11 100427239 100427386 -21416470 + B1_Mus2 SINE Alu 3 147 0 1 1351 251 67 0 43 chr11 100427386 100427433 -21416423 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1351 1313 76 54 0 chr11 100427502 100427686 -21416170 + B2_Mm2 SINE B2 1 194 -1 1 1351 626 259 67 10 chr11 100427693 100427888 -21415968 - ID_B1 SINE B4 -12 212 7 1 1351 374 276 0 71 chr11 100428639 100428752 -21415104 - PB1 SINE Alu -16 111 7 1 1351 306 0 0 0 chr11 100428823 100428857 -21414999 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1351 1604 36 0 0 chr11 100428959 100429151 -21414705 - B2_Mm1t SINE B2 -1 192 1 1 1351 400 309 65 0 chr11 100429307 100429430 -21414426 - MER3 DNA MER1_type -76 133 3 1 1351 1203 108 11 0 chr11 100430828 100431004 -21412852 - B2_Mm1t SINE B2 -14 179 2 1 1351 363 191 138 0 chr11 100431036 100431130 -21412726 + PB1D10 SINE Alu 11 117 0 1 1351 241 322 0 11 chr11 100431584 100431672 -21412184 - PB1D7 SINE Alu -15 105 19 1 1351 247 306 0 34 chr11 100431593 100431681 -21412175 - ID_B1 SINE B4 -49 175 91 1 1351 1093 98 103 6 chr11 100433720 100433895 -21409961 + B2_Mm2 SINE B2 2 193 -2 1 1351 1861 113 57 3 chr11 100433905 100434206 -21409650 - ORR1A2 LTR MaLR -8 319 3 1 1351 778 188 199 0 chr11 100434446 100434622 -21409234 + B3 SINE B2 1 211 -5 1 1351 873 163 20 0 chr11 100434633 100434780 -21409076 + B1_Mur4 SINE Alu 1 150 0 1 1351 21 0 0 0 chr11 100434960 100434981 -21408875 + AT_rich Low_complexity Low_complexity 1 21 0 1 1351 189 0 0 0 chr11 100434984 100435005 -21408851 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1351 793 87 0 0 chr11 100435005 100435120 -21408736 - B1_Mur4 SINE Alu -12 138 24 1 1351 445 214 11 0 chr11 100435236 100435325 -21408531 + ID_B1 SINE B4 132 221 -3 1 1351 1437 209 85 11 chr11 100435331 100435436 -21408420 - RLTR14 LTR ERV1 -2 380 270 1 1351 1097 75 0 13 chr11 100435436 100435585 -21408271 - B1_Mus1 SINE Alu 0 148 2 1 1351 1437 209 85 11 chr11 100435585 100435833 -21408023 - RLTR14 LTR ERV1 -113 269 2 1 1351 781 144 38 0 chr11 100435929 100436061 -21407795 + B1_Mur2 SINE Alu 13 149 0 1 1351 393 235 32 73 chr11 100438908 100439032 -21404824 - B1F2 SINE Alu 0 149 31 1 1351 721 99 41 0 chr11 100441281 100441402 -21402454 + B1_Mur4 SINE Alu 1 126 -24 1 1351 1099 42 0 0 chr11 100441401 100441543 -21402313 + B1_Mus2 SINE Alu 6 147 0 1 1351 190 300 67 48 chr11 100443599 100443704 -21400152 - L2a LINE L2 -319 3107 3001 1 1351 1163 82 0 13 chr11 100443709 100443858 -21399998 - B1_Mus1 SINE Alu 0 148 2 1 1351 292 236 148 43 chr11 100443891 100443916 -21399940 + B4 SINE B4 61 187 -105 1 1351 425 118 144 56 chr11 100443916 100444006 -21399850 + B1F SINE Alu 1 98 -51 1 1351 441 36 0 0 chr11 100444009 100444064 -21399792 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1351 523 182 63 9 chr11 100447312 100447423 -21396433 + PB1D9 SINE Alu 3 119 -1 1 1351 964 136 7 7 chr11 100447543 100447691 -21396165 + B1_Mur4 SINE Alu 2 149 -1 1 1351 551 248 68 30 chr11 100447796 100447929 -21395927 - B1F SINE Alu 0 149 12 1 1351 302 0 26 0 chr11 100448232 100448270 -21395586 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1351 253 188 62 0 chr11 100448476 100448524 -21395332 - PB1D10 SINE Alu -1 116 66 1 1351 400 300 89 155 chr11 100448481 100448532 -21395324 - ID_B1 SINE B4 -6 218 173 1 1351 750 144 40 67 chr11 100448532 100448681 -21395175 - B1_Mus2 SINE Alu -2 145 1 1 1351 400 300 89 155 chr11 100448681 100448705 -21395151 - ID_B1 SINE B4 -52 172 157 1 1351 878 169 0 33 chr11 100448705 100448858 -21394998 + B1_Mur4 SINE Alu 2 149 -1 1 1351 400 300 89 155 chr11 100448858 100448875 -21394981 - ID_B1 SINE B4 -68 156 156 1 1351 501 258 0 69 chr11 100448875 100449050 -21394806 - RSINE1 SINE B4 0 165 3 1 1351 400 300 89 155 chr11 100449050 100449168 -21394688 - ID_B1 SINE B4 -68 156 20 1 1351 240 340 176 7 chr11 100449124 100449205 -21394651 - ZP3AR Satellite Satellite -3 209 44 1 1351 305 246 0 0 chr11 100449205 100449266 -21394590 - ID4_ SINE ID -21 62 2 1 1351 886 25 246 0 chr11 100449404 100449522 -21394334 - B1_Mm SINE Alu 0 147 1 1 1351 22 0 0 0 chr11 100449547 100449569 -21394287 + AT_rich Low_complexity Low_complexity 1 22 0 1 1351 504 251 136 51 chr11 100449812 100449988 -21393868 + ID_B1 SINE B4 2 192 -32 1 1351 273 250 8 182 chr11 100449876 100450008 -21393848 + PB1D10 SINE Alu 9 117 0 1 1351 452 268 151 54 chr11 100450157 100450362 -21393494 - B4A SINE B4 -20 272 48 1 1351 274 309 216 31 chr11 100450383 100450480 -21393376 - B1F SINE Alu -32 117 3 1 1351 293 298 66 8 chr11 100450837 100450959 -21392897 - L2a LINE L2 -3 3423 3295 1 1351 503 308 143 5 chr11 100450927 100451123 -21392733 + L3b LINE CR1 222 444 -38 1 1351 1268 34 0 13 chr11 100451704 100451854 -21392002 - B1_Mus1 SINE Alu 0 148 1 1 1351 269 289 39 58 chr11 100453043 100453146 -21390710 - BC1_Mm scRNA scRNA -45 107 7 1 1351 774 160 33 40 chr11 100453201 100453351 -21390505 - B1_Mur3 SINE Alu 0 149 1 1 1351 227 329 0 14 chr11 100453464 100453535 -21390321 - tRNA-Ala-GCY_ tRNA tRNA -1 74 5 1 1351 316 322 25 34 chr11 100453675 100453794 -21390062 + MER58B DNA MER1_type 217 334 -7 1 1351 365 246 0 40 chr11 100453836 100453912 -21389944 + RSINE1 SINE B4 36 108 -57 1 1351 224 306 54 46 chr11 100454383 100454513 -21389343 - MIR SINE MIR -47 215 85 1 1351 1019 202 19 72 chr11 100454766 100454974 -21388882 + B3 SINE B2 10 206 -10 1 1351 629 228 19 0 chr11 100454975 100455100 -21388756 - B1_Mur1 SINE Alu -13 136 9 1 1351 589 180 20 0 chr11 100455794 100455894 -21387962 + B1_Mur2 SINE Alu 47 148 -1 1 1351 396 0 0 0 chr11 100456411 100456455 -21387401 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1351 841 127 97 0 chr11 100457645 100457779 -21386077 + B1_Mur2 SINE Alu 1 147 -2 1 1351 472 230 8 74 chr11 100457796 100457918 -21385938 + PB1D9 SINE Alu 1 114 -6 1 1351 247 255 127 73 chr11 100457933 100457951 -21385905 + ID_B1 SINE B4 70 124 -100 1 1351 276 253 173 0 chr11 100457951 100458026 -21385830 + PB1D10 SINE Alu 4 91 -26 1 1351 247 255 127 73 chr11 100458026 100458043 -21385813 + ID_B1 SINE B4 125 185 -39 1 1351 463 218 146 26 chr11 100458095 100458246 -21385610 + B2_Mm2 SINE B2 8 176 -19 1 1351 476 316 70 80 chr11 100458251 100458464 -21385392 + B4 SINE B4 3 213 -79 1 1351 271 233 40 14 chr11 100458497 100458571 -21385285 + B1_Mur2 SINE Alu 74 149 0 1 1351 903 150 0 0 chr11 100458739 100458879 -21384977 + B1_Mur3 SINE Alu 9 148 -1 1 1351 896 140 0 8 chr11 100458931 100459061 -21384795 + B3 SINE B2 2 130 -86 1 1351 690 260 99 5 chr11 100459153 100459354 -21384502 - ID_B1 SINE B4 0 224 5 1 1351 1220 55 7 0 chr11 100460103 100460249 -21383607 + B1_Mus2 SINE Alu 1 147 0 1 1351 361 324 111 6 chr11 100460343 100460514 -21383342 + MER20 DNA MER1_type 6 194 -25 1 1351 768 215 87 25 chr11 100460664 100460860 -21382996 + B3 SINE B2 2 209 -7 1 1351 289 264 22 123 chr11 100460869 100460885 -21382971 + MT2B LTR ERVL 153 275 -325 1 1351 620 207 50 0 chr11 100460885 100461006 -21382850 + B1_Mur2 SINE Alu 3 129 -20 1 1351 371 343 46 89 chr11 100461074 100461378 -21382478 + B4A SINE B4 2 292 0 1 1351 268 43 21 21 chr11 100461434 100461481 -21382375 + (CACAC)n Simple_repeat Simple_repeat 1 47 0 1 1351 225 0 0 0 chr11 100461518 100461543 -21382313 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1351 324 207 107 24 chr11 100461568 100461652 -21382204 + MT2B2 LTR ERVL 197 287 -297 1 1351 329 276 154 23 chr11 100461611 100461741 -21382115 + B4A SINE B4 75 221 -71 1 1351 558 162 9 54 chr11 100461636 100461747 -21382109 + PB1D9 SINE Alu 15 120 0 1 1351 564 309 89 30 chr11 100461782 100462108 -21381748 + L1MA4A LINE L1 5438 5783 -520 1 1351 531 82 0 0 chr11 100462108 100462181 -21381675 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1351 564 322 102 25 chr11 100462181 100462305 -21381551 + L1MA4A LINE L1 5784 5927 -244 1 1351 570 224 17 8 chr11 100463329 100463446 -21380410 + PB1D7 SINE Alu 1 118 -2 1 1351 238 323 67 8 chr11 100463473 100463607 -21380249 + B1_Mus2 SINE Alu 6 147 0 1 1351 816 213 131 0 chr11 100463610 100463793 -21380063 + B3 SINE B2 1 207 -9 1 1351 22 70 0 0 chr11 100463793 100463836 -21380020 + AT_rich Low_complexity Low_complexity 1 43 0 1 1351 1284 92 15 66 chr11 100463852 100464049 -21379807 + B2_Mm2 SINE B2 2 188 -7 1 1351 1160 77 118 0 chr11 100464060 100464229 -21379627 + B2_Mm2 SINE B2 3 191 -4 1 1351 454 191 160 0 chr11 100464305 100464424 -21379432 - PB1D10 SINE Alu 0 149 12 1 1351 804 164 7 48 chr11 100464781 100464928 -21378928 + B1_Mur1 SINE Alu 2 142 -7 1 1351 1217 49 0 0 chr11 100466259 100466402 -21377454 + B1_Mus2 SINE Alu 5 147 0 1 1351 213 65 0 0 chr11 100466402 100466433 -21377423 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1351 246 128 0 0 chr11 100467223 100467262 -21376594 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1351 327 123 0 66 chr11 100467290 100467351 -21376505 - B1_Mus2 SINE Alu -88 59 3 1 1351 295 192 0 75 chr11 100467351 100467368 -21376488 - ID_B1 SINE B4 -77 130 78 1 1351 629 206 7 51 chr11 100467370 100467508 -21376348 + B1_Mur1 SINE Alu 18 149 0 1 1351 423 256 0 0 chr11 100467831 100467909 -21375947 - ID_B1 SINE B4 -30 194 117 1 1351 225 0 0 0 chr11 100468016 100468041 -21375815 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1351 1207 68 0 0 chr11 100468041 100468188 -21375668 - B1_Mus1 SINE Alu 0 148 2 1 1351 268 211 37 19 chr11 100468602 100468656 -21375200 + RSINE1 SINE B4 1 54 -238 1 1351 396 0 0 0 chr11 100468708 100468752 -21375104 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1351 270 0 0 0 chr11 100468752 100468781 -21375075 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1351 513 235 126 0 chr11 100468824 100468943 -21374913 - B1_Mur1 SINE Alu -15 134 1 1 1351 624 263 63 38 chr11 100469516 100469674 -21374182 + RSINE1 SINE B4 4 165 0 1 1351 892 255 15 29 chr11 100469702 100469908 -21373948 - B3 SINE B2 -5 211 9 1 1351 801 220 333 10 chr11 100470086 100470402 -21373454 + MTD LTR MaLR 7 419 0 1 1351 367 278 9 18 chr11 100471224 100471334 -21372522 - PB1D9 SINE Alu -7 113 5 1 1351 261 0 0 0 chr11 100471684 100471713 -21372143 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1351 222 171 0 0 chr11 100472238 100472279 -21371577 + CT-rich Low_complexity Low_complexity 2 42 0 1 1351 249 258 91 61 chr11 100472437 100472536 -21371320 + MT2B LTR ERVL 156 257 -344 1 1351 479 299 0 9 chr11 100472466 100472574 -21371282 + B1F SINE Alu 36 142 -7 1 1351 1196 69 0 0 chr11 100472585 100472730 -21371126 + B1_Mus2 SINE Alu 3 147 0 1 1351 840 144 32 0 chr11 100472750 100472875 -21370981 + B3 SINE B2 1 129 -87 1 1351 33 0 0 0 chr11 100472894 100472927 -21370929 + AT_rich Low_complexity Low_complexity 1 33 0 1 1351 450 184 39 39 chr11 100473893 100473995 -21369861 + RSINE1 SINE B4 1 102 -63 1 1351 222 128 0 0 chr11 100473996 100474035 -21369821 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1351 1213 115 16 6 chr11 100474984 100475167 -21368689 + B2_Mm2 SINE B2 2 186 -9 1 1351 606 242 4 11 chr11 100475598 100475729 -21368127 + B1_Mur1 SINE Alu 1 133 -16 1 1351 974 123 6 0 chr11 100475731 100475893 -21367963 + (GGAGA)n Simple_repeat Simple_repeat 4 166 0 1 1351 438 218 0 0 chr11 100475893 100475971 -21367885 + RSINE1 SINE B4 23 100 -65 1 1351 192 40 0 0 chr11 100475973 100475998 -21367858 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1351 657 172 68 209 chr11 100476056 100476136 -21367720 + B3 SINE B2 1 53 -163 1 1351 1234 87 46 6 chr11 100476136 100476310 -21367546 - B2_Mm2 SINE B2 -14 181 1 1 1351 657 172 68 209 chr11 100476310 100476478 -21367378 + B3 SINE B2 54 214 -2 1 1351 821 236 43 16 chr11 100476498 100476683 -21367173 + B3A SINE B2 2 191 -7 1 1351 1572 37 16 5 chr11 100476778 100476970 -21366886 - B2_Mm2 SINE B2 0 195 2 1 1351 312 70 0 0 chr11 100477362 100477405 -21366451 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 1 1351 741 23 0 0 chr11 100478138 100478225 -21365631 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1 1351 1042 88 0 29 chr11 100478230 100478370 -21365486 - B1_Mus1 SINE Alu -11 137 2 1 1351 821 61 211 0 chr11 100478385 100478499 -21365357 + B1_Mus2 SINE Alu 1 138 -9 1 1351 222 37 0 0 chr11 100478572 100478599 -21365257 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1 1351 870 156 16 0 chr11 100478630 100478758 -21365098 - B3 SINE B2 -86 130 1 1 1351 237 280 118 22 chr11 100478860 100478895 -21364961 - B1_Mur1 SINE Alu -1 148 116 1 1351 456 19 0 0 chr11 100478895 100478948 -21364908 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1351 255 252 141 0 chr11 100478948 100479047 -21364809 - B1_Mm SINE Alu -34 113 1 1 1351 391 294 33 0 chr11 100479047 100479139 -21364717 - PB1D10 SINE Alu -21 96 2 1 1351 505 209 18 71 chr11 100479252 100479365 -21364491 + B1_Mur1 SINE Alu 1 107 -42 1 1351 216 0 0 0 chr11 100479997 100480021 -21363835 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 1351 791 178 175 17 chr11 100482021 100482198 -21361658 - URR1B DNA MER1_type -20 205 1 1 1351 211 312 127 45 chr11 100482443 100482577 -21361279 + L2c LINE L2 2719 2863 -556 1 1351 4312 107 7 3 chr11 100482699 100483298 -21360558 + MT2B LTR ERVL 1 601 0 1 1351 203 347 106 39 chr11 100483345 100483525 -21360331 + L2c LINE L2 3103 3294 -93 1 1351 395 208 108 31 chr11 100483614 100483728 -21360128 - PB1D7 SINE Alu -19 129 9 1 1351 229 288 17 0 chr11 100483676 100483735 -21360121 - ID_B1 SINE B4 -83 141 82 1 1351 960 162 0 0 chr11 100483753 100483895 -21359961 + B1_Mur3 SINE Alu 1 142 -7 1 1351 273 278 0 0 chr11 100483920 100483974 -21359882 + ID SINE ID 27 80 -144 1 1351 272 266 63 14 chr11 100483974 100483995 -21359861 + ID4 SINE ID 31 96 -56 1 1351 1066 82 0 7 chr11 100484845 100484981 -21358875 + B1_Mus1 SINE Alu 2 136 -12 1 1351 235 171 35 176 chr11 100485103 100485126 -21358730 + B1_Mur1 SINE Alu 73 144 -4 1 1351 308 246 0 0 chr11 100485126 100485187 -21358669 + ID_B1 SINE B4 159 219 -5 1 1351 338 270 16 105 chr11 100485967 100486091 -21357765 - PB1D9 SINE Alu -7 113 1 1 1351 2982 65 33 5 chr11 100486574 100486963 -21356893 + MTB LTR MaLR 1 400 0 1 1351 488 180 0 105 chr11 100489202 100489326 -21354530 + MT2B LTR ERVL 154 264 -337 1 1351 953 35 0 0 chr11 100489215 100489331 -21354525 + B1_Mm SINE Alu 2 117 -30 1 1351 495 258 70 0 chr11 100489346 100489474 -21354382 + B1_Mur1 SINE Alu 3 139 -10 1 1351 394 224 167 39 chr11 100489621 100489723 -21354133 - PB1D10 SINE Alu -2 115 1 1 1351 234 0 0 0 chr11 100490964 100490990 -21352866 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 1 1351 1179 76 0 0 chr11 100492300 100492445 -21351411 + B1_Mm SINE Alu 2 146 -1 1 1351 183 291 36 18 chr11 100492486 100492542 -21351314 + L2 LINE L2 1474 1530 -1889 1 1351 811 279 9 31 chr11 100492715 100492941 -21350915 - ID_B1 SINE B4 -3 221 1 1 1351 409 326 23 15 chr11 100492947 100493078 -21350778 - ID_B1 SINE B4 -2 222 91 1 1351 501 261 41 82 chr11 100493081 100493252 -21350604 + MLT1C LTR MaLR 304 467 0 1 1351 523 244 154 40 chr11 100493396 100493544 -21350312 + B3A SINE B2 4 176 -22 1 1351 1010 117 0 22 chr11 100493544 100493728 -21350128 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1351 523 244 154 40 chr11 100493728 100493754 -21350102 + B3A SINE B2 177 198 0 1 1351 994 141 0 39 chr11 100493755 100493910 -21349946 + B1_Mur4 SINE Alu 1 149 -1 1 1351 423 0 0 0 chr11 100494473 100494520 -21349336 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1351 472 234 42 67 chr11 100494656 100494777 -21349079 - PB1D10 SINE Alu -20 129 12 1 1351 283 182 127 100 chr11 100494680 100494790 -21349066 - MT2B LTR ERVL -338 263 151 1 1351 406 344 38 4 chr11 100495235 100495425 -21348431 + MIRb SINE MIR 14 208 -60 1 1351 869 114 67 30 chr11 100495430 100495565 -21348291 + B1_Mur4 SINE Alu 11 150 0 1 1351 574 200 19 0 chr11 100495573 100495678 -21348178 + B1_Mur1 SINE Alu 1 107 -42 1 1351 450 240 69 17 chr11 100496572 100496703 -21347153 - PB1D10 SINE Alu -1 149 7 1 1351 274 242 60 90 chr11 100496619 100496719 -21347137 - B4A SINE B4 -114 178 82 1 1351 452 268 71 9 chr11 100496717 100496830 -21347026 - PB1D9 SINE Alu 0 120 1 1 1351 893 220 24 0 chr11 100496830 100496908 -21346948 - ID SINE ID -140 84 3 1 1351 202 214 24 0 chr11 100496915 100496957 -21346899 + CT-rich Low_complexity Low_complexity 1 43 0 1 1351 549 191 84 78 chr11 100497003 100497145 -21346711 - B1F SINE Alu 0 149 7 1 1351 311 338 77 94 chr11 100497289 100497524 -21346332 + MamGypLTR1b LTR Gypsy 413 643 -139 1 1351 475 50 80 0 chr11 100497660 100497760 -21346096 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1351 678 244 28 74 chr11 100497846 100498008 -21345848 + B4A SINE B4 2 161 -131 1 1351 2018 173 4 100 chr11 100498008 100498509 -21345347 - RLTR11B LTR ERVK 0 453 1 1 1351 678 244 28 74 chr11 100498509 100498563 -21345293 + B4A SINE B4 162 208 -84 1 1351 1103 76 7 14 chr11 100498731 100498878 -21344978 + B1_Mm SINE Alu 2 147 0 1 1351 879 219 88 0 chr11 100499660 100499852 -21344004 + B3 SINE B2 2 210 -6 1 1351 1018 54 85 0 chr11 100499870 100500000 -21343856 + B1_Mus1 SINE Alu 1 141 -7 1 1351 342 0 0 0 chr11 100500005 100500043 -21343813 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 1351 1191 54 0 7 chr11 100500312 100500451 -21343405 + B1_Mus1 SINE Alu 1 139 -9 2 1351 207 0 0 0 chr11 100500451 100500474 -21343382 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1351 1143 42 7 27 chr11 100500793 100500939 -21342917 - B1_Mus1 SINE Alu -5 143 1 4 1351 382 221 146 8 chr11 100502559 100502682 -21341174 + MIRc SINE MIR 3 142 -126 5 1351 252 0 0 0 chr11 100503088 100503116 -21340740 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1351 484 281 8 30 chr11 100503121 100503253 -21340603 - ID_B1 SINE B4 -35 189 61 7 1351 771 164 0 41 chr11 100503230 100503376 -21340480 - B1_Mur4 SINE Alu 0 150 11 8 1351 318 232 9 112 chr11 100503281 100503388 -21340468 - MT2B LTR ERVL -344 257 162 9 1351 809 183 0 47 chr11 100503432 100503581 -21340275 - B1F2 SINE Alu -7 142 1 1 1351 387 0 0 0 chr11 100504473 100504516 -21339340 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1351 200 125 0 70 chr11 100504792 100504835 -21339021 + CT-rich Low_complexity Low_complexity 2 41 0 1 1351 198 0 0 0 chr11 100505850 100505872 -21337984 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 1 1351 980 177 96 29 chr11 100506284 100506493 -21337363 - ID_B1 SINE B4 0 224 2 1 1351 492 106 0 0 chr11 100506591 100506676 -21337180 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1351 1456 45 67 0 chr11 100506922 100507100 -21336756 + B2_Mm1a SINE B2 1 190 -3 1 1351 1177 54 0 45 chr11 100508362 100508517 -21335339 + B1_Mus1 SINE Alu 1 148 0 1 1351 489 110 0 0 chr11 100508517 100508590 -21335266 + (A)n Simple_repeat Simple_repeat 1 73 0 1 1351 1298 91 6 11 chr11 100508600 100508777 -21335079 + B2_Mm1t SINE B2 2 177 -16 1 1351 311 87 322 26 chr11 100508811 100508926 -21334930 + B2_Mm2 SINE B2 47 195 0 2 1351 830 143 7 0 chr11 100510232 100510379 -21333477 + (GGGA)n Simple_repeat Simple_repeat 3 150 0 2 1351 1155 117 0 0 chr11 100510381 100510561 -21333295 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1351 330 26 0 0 chr11 100510911 100510950 -21332906 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1351 205 86 29 0 chr11 100510998 100511033 -21332823 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1351 799 81 114 0 chr11 100511034 100511157 -21332699 - B1_Mus1 SINE Alu 0 148 12 2 1351 328 267 67 0 chr11 100511151 100511241 -21332615 + B1F SINE Alu 25 120 -29 2 1351 188 294 120 42 chr11 100512269 100512411 -21331445 - MIRm SINE MIR -83 193 41 2 1351 1351 79 15 26 chr11 100513745 100513940 -21329916 - B2_Mm2 SINE B2 0 195 3 2 1351 480 99 0 0 chr11 100513947 100514018 -21329838 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 1351 863 151 0 35 chr11 100514018 100514162 -21329694 - B1_Mur2 SINE Alu -9 140 2 3 1351 416 278 51 17 chr11 100514302 100514419 -21329437 - B1_Mur2 SINE Alu -16 133 13 3 1351 345 250 0 27 chr11 100516500 100516574 -21327282 - ID4 SINE ID -9 74 3 3 1351 310 237 66 18 chr11 100516583 100516692 -21327164 - B1F SINE Alu -1 148 30 3 1351 1232 55 0 0 chr11 100516807 100516953 -21326903 + B1_Mus2 SINE Alu 2 147 0 3 1351 198 0 0 0 chr11 100516953 100516975 -21326881 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1351 839 145 58 19 chr11 100517011 100517166 -21326690 + B2_Mm2 SINE B2 2 162 -33 3 1351 360 0 0 0 chr11 100517166 100517206 -21326650 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 1351 35 24 0 0 chr11 100517253 100517295 -21326561 + AT_rich Low_complexity Low_complexity 1 42 0 3 1351 332 266 106 0 chr11 100517322 100517416 -21326440 - PB1D10 SINE Alu -13 104 1 3 1351 217 211 96 0 chr11 100518324 100518376 -21325480 - ID4 SINE ID -22 61 5 4 1351 216 130 0 0 chr11 100518383 100518429 -21325427 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 4 1351 930 46 121 8 chr11 100518429 100518561 -21325295 - B1_Mus1 SINE Alu -1 147 1 4 1351 261 0 0 0 chr11 100519657 100519686 -21324170 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1351 296 396 0 6 chr11 100519717 100519877 -21323979 + (TG)n Simple_repeat Simple_repeat 2 160 0 4 1351 532 256 18 30 chr11 100519977 100520142 -21323714 + MLT1B LTR MaLR 11 173 -217 4 1351 422 261 16 50 chr11 100520177 100520298 -21323558 + PB1D10 SINE Alu 1 117 0 4 1351 1028 156 194 0 chr11 100520305 100520485 -21323371 + B3 SINE B2 1 215 -1 4 1351 1428 83 5 35 chr11 100520512 100520712 -21323144 + B2_Mm2 SINE B2 1 194 -1 4 1351 743 259 73 11 chr11 100520723 100520914 -21322942 + ID_B1 SINE B4 9 211 -13 4 1351 384 277 24 40 chr11 100520968 100521092 -21322764 + MLT1B LTR MaLR 345 466 -1 4 1351 419 306 40 70 chr11 100521856 100522117 -21321739 + RMER15 LTR ERVL 275 574 -1 4 1351 564 316 148 11 chr11 100522117 100522388 -21321468 + MLT1C LTR MaLR 159 467 0 5 1351 270 81 0 0 chr11 100523215 100523252 -21320604 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1351 559 279 101 0 chr11 100523464 100523622 -21320234 + ID_B1 SINE B4 32 205 -19 5 1351 667 131 13 27 chr11 100523628 100523777 -21320079 + CT-rich Low_complexity Low_complexity 1 147 0 5 1351 1007 162 0 0 chr11 100523779 100523927 -21319929 - B1_Mur4 SINE Alu -2 148 1 5 1351 255 61 0 0 chr11 100523937 100523970 -21319886 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 5 1351 970 156 201 0 chr11 100523992 100524171 -21319685 + B3 SINE B2 2 216 0 5 1351 201 39 0 0 chr11 100524186 100524212 -21319644 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1351 2971 21 3 0 chr11 100524212 100524544 -21319312 + IAPLTR1a_Mm LTR ERVK 5 337 0 5 1351 21920 36 18 13 chr11 100524544 100527275 -21316581 + IAPEz-int LTR ERVK 8 2751 -3730 5 1351 28019 13 2 0 chr11 100527267 100530499 -21313357 + IAPEz-int LTR ERVK 3244 6481 0 5 1351 3008 21 3 0 chr11 100530499 100530835 -21313021 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1351 1081 44 73 0 chr11 100530843 100530979 -21312877 - B1_Mm SINE Alu 0 147 2 5 1351 854 185 119 21 chr11 100530987 100531180 -21312676 - B3 SINE B2 -4 212 1 6 1352 197 346 0 25 chr11 100532274 100532354 -21311502 + MIR3 SINE MIR 104 181 -27 6 1352 180 211 0 0 chr11 100533815 100533853 -21310003 - L3b LINE CR1 -196 286 249 6 1352 213 272 50 5 chr11 100535269 100535399 -21308457 + L2c LINE L2 3026 3162 -225 6 1352 188 276 72 72 chr11 100535758 100535883 -21307973 + L2 LINE L2 2485 2609 -810 6 1352 221 316 225 38 chr11 100535796 100536036 -21307820 - L3b LINE CR1 -16 4492 4202 6 1352 288 130 0 0 chr11 100536133 100536179 -21307677 + (TCC)n Simple_repeat Simple_repeat 3 48 0 6 1352 359 237 0 0 chr11 100536512 100536593 -21307263 - ID4 SINE ID -58 94 14 6 1352 360 328 17 8 chr11 100536897 100537014 -21306842 - MIRb SINE MIR -140 128 11 6 1352 524 228 30 38 chr11 100537104 100537236 -21306620 + B1F SINE Alu 19 149 0 6 1352 1218 61 0 0 chr11 100537259 100537407 -21306449 + B1_Mus1 SINE Alu 1 148 0 7 1352 1179 196 9 5 chr11 100538045 100538260 -21305596 - ID_B1 SINE B4 -8 216 1 7 1352 216 97 0 0 chr11 100538279 100538310 -21305546 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1352 991 93 27 54 chr11 100538314 100538462 -21305394 + B1_Mus1 SINE Alu 3 146 -2 7 1352 226 0 0 56 chr11 100538468 100538504 -21305352 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 7 1352 241 357 96 19 chr11 100541115 100541272 -21302584 - MER5B DNA MER1_type -3 175 7 7 1352 1718 169 26 124 chr11 100541427 100541853 -21302003 + ORR1C2 LTR MaLR 1 384 0 7 1352 281 143 20 0 chr11 100541925 100541974 -21301882 - B2_Mm1t SINE B2 -116 77 28 7 1352 355 310 10 0 chr11 100541976 100542076 -21301780 - ID_B1 SINE B4 -1 223 123 7 1352 513 228 26 17 chr11 100542110 100542226 -21301630 - PB1D10 SINE Alu 0 117 1 7 1352 253 243 86 0 chr11 100542165 100542235 -21301621 - B4A SINE B4 -146 146 71 8 1352 210 189 18 36 chr11 100542349 100542404 -21301452 + C-rich Low_complexity Low_complexity 5 58 0 8 1352 213 303 43 43 chr11 100542903 100542996 -21300860 + MIR SINE MIR 78 170 -92 8 1352 264 59 0 0 chr11 100543568 100543602 -21300254 + (TCC)n Simple_repeat Simple_repeat 3 36 0 8 1352 211 232 107 0 chr11 100543675 100543690 -21300166 + ID4_ SINE ID 15 76 -7 8 1352 248 287 161 65 chr11 100543690 100543731 -21300125 + ID SINE ID 37 77 -147 8 1352 369 0 0 0 chr11 100543731 100543772 -21300084 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 8 1352 248 287 161 65 chr11 100543772 100543787 -21300069 + ID_B1 SINE B4 78 219 -4 8 1352 441 254 18 0 chr11 100543787 100543897 -21299959 + B1F SINE Alu 33 144 -5 8 1352 271 286 65 0 chr11 100543968 100544045 -21299811 + RMER30 DNA MER1_type 9 90 -112 8 1352 267 103 0 0 chr11 100544061 100544100 -21299756 + (CAAG)n Simple_repeat Simple_repeat 2 40 0 8 1352 631 196 8 1 chr11 100544120 100544248 -21299608 + B3A SINE B2 59 186 -30 9 1352 520 115 0 19 chr11 100544248 100544354 -21299502 + (CA)n Simple_repeat Simple_repeat 1 104 0 9 1352 491 271 18 49 chr11 100544354 100544367 -21299489 + B3 SINE B2 187 195 -21 9 1352 913 102 19 70 chr11 100544367 100544525 -21299331 + B1_Mur4 SINE Alu 1 150 0 9 1352 491 271 18 49 chr11 100544525 100544545 -21299311 + B3 SINE B2 196 215 -1 9 1352 413 269 16 40 chr11 100544550 100544674 -21299182 + RMER30 DNA MER1_type 82 202 0 8 1352 919 48 0 8 chr11 100545125 100545250 -21298606 + B1_Mus1 SINE Alu 24 147 -1 9 1352 954 90 0 0 chr11 100545281 100545415 -21298441 + (GAA)n Simple_repeat Simple_repeat 2 135 0 9 1352 1055 153 60 0 chr11 100545784 100545967 -21297889 - B2_Mm2 SINE B2 0 195 2 9 1352 513 304 0 47 chr11 100546048 100546217 -21297639 - RSINE1 SINE B4 0 165 5 9 1352 808 73 0 0 chr11 100546234 100546344 -21297512 - B1_Mus1 SINE Alu 0 148 39 9 1352 241 284 121 24 chr11 100546402 100546485 -21297371 - B4A SINE B4 -150 142 52 9 1352 231 293 81 47 chr11 100546535 100546621 -21297235 + L2c LINE L2 3318 3426 0 9 1352 450 0 0 0 chr11 100546841 100546891 -21296965 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1352 519 181 99 125 chr11 100547299 100547451 -21296405 + B1_Mus1 SINE Alu 1 148 0 1 1352 684 271 28 222 chr11 100547750 100547917 -21295939 + MTEa LTR MaLR 5 171 -208 1 1352 632 154 0 35 chr11 100547917 100548031 -21295825 + PB1D9 SINE Alu 2 111 -9 1 1352 684 271 28 222 chr11 100548031 100548299 -21295557 + MTEa LTR MaLR 172 355 -24 1 1352 551 148 182 32 chr11 100549318 100549444 -21294412 + B1F SINE Alu 5 149 0 1 1352 402 21 0 0 chr11 100549498 100549545 -21294311 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1352 210 160 0 0 chr11 100550048 100550098 -21293758 + A-rich Low_complexity Low_complexity 1 50 0 1 1352 390 309 54 25 chr11 100550929 100551058 -21292798 + PB1 SINE Alu 6 132 -17 1 1352 250 339 0 0 chr11 100551060 100551143 -21292713 + ID4 SINE ID 8 90 -62 1 1352 448 307 17 100 chr11 100551151 100551179 -21292677 - MER115 DNA Tip100 -82 611 591 1 1352 829 196 102 36 chr11 100551179 100551375 -21292481 - ID_B1 SINE B4 -15 209 1 1 1352 448 307 17 100 chr11 100551375 100551585 -21292271 - MER115 DNA Tip100 -103 590 393 1 1352 191 231 0 55 chr11 100552170 100552225 -21291631 + L3b LINE CR1 312 363 -119 1 1352 410 290 38 8 chr11 100552292 100552424 -21291432 - MIR SINE MIR -16 246 111 1 1352 636 221 21 35 chr11 100552530 100552675 -21291181 + RSINE1 SINE B4 3 145 -20 1 1352 324 0 0 0 chr11 100552679 100552715 -21291141 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1352 479 69 14 0 chr11 100552715 100552786 -21291070 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1352 195 366 173 6 chr11 100552797 100552959 -21290897 + L3b LINE CR1 265 453 -29 1 1352 397 268 31 10 chr11 100553977 100554075 -21289781 - PB1D10 SINE Alu -9 108 9 1 1352 218 156 0 22 chr11 100554108 100554154 -21289702 + CT-rich Low_complexity Low_complexity 3 47 0 1 1352 254 261 130 0 chr11 100555288 100555357 -21288499 - MamRep4096 DNA hAT? -1 425 348 1 1352 375 118 26 13 chr11 100555485 100555562 -21288294 + CT-rich Low_complexity Low_complexity 2 79 0 1 1352 329 174 159 0 chr11 100555563 100555632 -21288224 - ID_B1 SINE B4 0 224 145 1 1352 435 100 0 0 chr11 100555656 100555726 -21288130 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1352 398 267 60 15 chr11 100555743 100555876 -21287980 - RSINE1 SINE B4 -21 144 6 1 1352 449 278 16 8 chr11 100555879 100556006 -21287850 - ID_B1 SINE B4 -83 141 14 1 1352 1375 200 165 36 chr11 100556778 100557248 -21286608 + RMER4B LTR ERVK 15 585 0 1 1352 1210 54 0 20 chr11 100557881 100558032 -21285824 + B1_Mus1 SINE Alu 1 148 0 1 1352 225 0 0 0 chr11 100558032 100558057 -21285799 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1352 769 208 141 0 chr11 100558595 100558787 -21285069 - B4A SINE B4 -67 225 7 1 1352 217 111 18 36 chr11 100558839 100558874 -21284982 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1352 1207 55 7 0 chr11 100558874 100559020 -21284836 - B1_Mus1 SINE Alu -1 147 1 1 1352 217 111 18 36 chr11 100559020 100559040 -21284816 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1352 501 266 161 36 chr11 100560016 100560184 -21283672 - ID_B1 SINE B4 -13 211 23 1 1352 350 271 42 0 chr11 100561025 100561121 -21282735 - PB1D10 SINE Alu 0 117 18 1 1352 1222 156 102 4 chr11 100561122 100561367 -21282489 + ORR1B1 LTR MaLR 1 269 -125 1 1352 350 129 0 16 chr11 100561367 100561430 -21282426 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 1 1352 1233 77 0 16 chr11 100561642 100561826 -21282030 + B2_Mm2 SINE B2 8 188 -7 1 1352 1523 59 5 0 chr11 100561834 100562020 -21281836 + B2_Mm1t SINE B2 1 187 -6 1 1352 752 229 32 6 chr11 100562123 100562281 -21281575 + RSINE1 SINE B4 3 164 -1 1 1352 788 175 21 81 chr11 100563862 100564048 -21279808 + B2_Mm2 SINE B2 2 176 -19 1 1352 182 335 139 24 chr11 100564150 100564315 -21279541 - L2a LINE L2 -260 3166 2983 1 1352 243 0 0 0 chr11 100565632 100565659 -21278197 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1352 234 105 0 0 chr11 100567188 100567226 -21276630 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1352 822 288 9 0 chr11 100568801 100569016 -21274840 + ID_B1 SINE B4 5 221 -3 1 1352 356 263 13 0 chr11 100569046 100569122 -21274734 + ID4 SINE ID 4 80 -3 1 1352 198 0 0 0 chr11 100569123 100569145 -21274711 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1352 965 125 14 14 chr11 100569174 100569320 -21274536 - B1_Mus1 SINE Alu -1 147 2 1 1352 189 291 69 85 chr11 100571032 100571220 -21272636 + MIRc SINE MIR 33 217 -51 1 1352 1228 55 0 0 chr11 100571270 100571416 -21272440 + B1_Mus2 SINE Alu 1 146 -1 1 1352 220 255 10 10 chr11 100573554 100573657 -21270199 + (CTGGGG)n Simple_repeat Simple_repeat 1 103 0 1 1352 249 33 0 0 chr11 100574224 100574254 -21269602 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1352 1147 63 0 21 chr11 100574254 100574390 -21269466 - B1_Mus1 SINE Alu -10 138 3 1 1352 216 0 0 0 chr11 100574515 100574539 -21269317 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1352 290 67 22 0 chr11 100574904 100574949 -21268907 + (CAGGG)n Simple_repeat Simple_repeat 2 47 0 1 1352 704 140 253 0 chr11 100577804 100577954 -21265902 - B2_Mm2 SINE B2 -6 189 2 1 1352 256 208 147 40 chr11 100578608 100578683 -21265173 + PB1D10 SINE Alu 5 87 -30 1 1352 1415 75 38 0 chr11 100579480 100579666 -21264190 - B2_Mm2 SINE B2 -2 193 1 1 1352 252 0 0 0 chr11 100580102 100580130 -21263726 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 1 1352 256 297 117 0 chr11 100583029 100583136 -21260720 - MIRm SINE MIR -116 146 32 1 1352 310 204 17 26 chr11 100584291 100584407 -21259449 + (TG)n Simple_repeat Simple_repeat 2 116 0 1 1352 1451 169 82 16 chr11 100584416 100584735 -21259121 - RLTR15 LTR ERVK -19 340 1 1 1352 266 231 35 23 chr11 100584762 100584888 -21258968 + (TG)n Simple_repeat Simple_repeat 1 129 0 1 1352 2432 170 121 14 chr11 100584888 100585401 -21258455 + RLTR12A LTR ERVK 1 568 0 1 1352 266 231 35 23 chr11 100585401 100585447 -21258409 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1352 473 206 0 10 chr11 100585998 100586101 -21257755 + PB1D9 SINE Alu 18 119 -1 1 1352 242 306 47 64 chr11 100586887 100587050 -21256806 + MIR SINE MIR 29 191 -71 1 1352 261 146 24 52 chr11 100587175 100587250 -21256606 - MIR SINE MIR -146 122 39 1 1352 429 20 0 0 chr11 100587343 100587393 -21256463 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1 1352 267 103 0 0 chr11 100587396 100587435 -21256421 + (TTCTC)n Simple_repeat Simple_repeat 2 40 0 1 1352 853 103 8 0 chr11 100587435 100587561 -21256295 - B1_Mus2 SINE Alu 0 147 21 1 1352 325 296 320 0 chr11 100587615 100587740 -21256116 - RSINE1 SINE B4 0 165 1 1 1352 557 246 82 0 chr11 100587925 100588059 -21255797 + B1_Mur2 SINE Alu 5 149 0 1 1352 1354 80 6 0 chr11 100588288 100588463 -21255393 + B2_Mm2 SINE B2 1 176 -19 1 1352 598 252 23 0 chr11 100589215 100589346 -21254510 + RSINE1 SINE B4 3 136 -29 1 1352 21 0 0 0 chr11 100589368 100589389 -21254467 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 1268 20 0 7 chr11 100589394 100589541 -21254315 + B1_Mus2 SINE Alu 1 146 -1 1 1352 339 211 146 10 chr11 100589834 100589930 -21253926 - PB1D10 SINE Alu 0 117 9 1 1352 241 297 66 0 chr11 100589861 100589952 -21253904 - B4 SINE B4 -127 165 69 1 1352 1222 34 0 7 chr11 100591127 100591273 -21252583 + B1_Mus2 SINE Alu 2 146 -1 1 1352 1071 269 234 34 chr11 100592746 100593373 -21250483 + L1MC3 LINE L1 6764 7516 -269 1 1352 289 221 64 13 chr11 100593446 100593524 -21250332 + L1MC3 LINE L1 7660 7741 -44 1 1352 878 159 21 0 chr11 100594727 100594872 -21248984 + B1_Mus1 SINE Alu 1 148 0 1 1352 493 256 29 22 chr11 100595030 100595166 -21248690 - B1F1 SINE Alu 0 149 13 1 1352 623 207 20 54 chr11 100595307 100595455 -21248401 + B1_Mus2 SINE Alu 5 147 0 1 1352 432 180 19 96 chr11 100595512 100595650 -21248206 - PB1D9 SINE Alu -20 130 2 1 1352 1660 31 11 0 chr11 100595894 100596085 -21247771 - B2_Mm1a SINE B2 0 193 1 1 1352 252 299 116 63 chr11 100596085 100596274 -21247582 - MIRb SINE MIR -69 199 1 1 1352 772 244 67 5 chr11 100596304 100596498 -21247358 - ID_B1 SINE B4 -17 207 2 1 1352 678 242 26 0 chr11 100596516 100596654 -21247202 + RSINE1 SINE B4 3 144 -21 1 1352 405 0 0 0 chr11 100596654 100596699 -21247157 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1352 678 242 26 0 chr11 100596699 100596713 -21247143 + RSINE1 SINE B4 145 158 -7 1 1352 579 232 0 35 chr11 100596782 100596898 -21246958 + PB1D9 SINE Alu 1 112 -8 1 1352 342 0 0 0 chr11 100597882 100597920 -21245936 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1352 359 205 64 0 chr11 100599983 100600061 -21243795 + PB1D9 SINE Alu 38 120 0 1 1352 270 136 0 0 chr11 100600061 100600105 -21243751 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1352 481 254 79 0 chr11 100600146 100600272 -21243584 + RSINE1 SINE B4 2 137 -28 1 1352 658 239 7 2 chr11 100600390 100600540 -21243316 - B1_Mur1 SINE Alu -1 148 1 1 1352 313 299 51 73 chr11 100600425 100600562 -21243294 - B4 SINE B4 -90 202 69 1 1352 1140 62 7 0 chr11 100600765 100600910 -21242946 - B1_Mus2 SINE Alu 0 147 2 1 1352 396 0 0 0 chr11 100603551 100603595 -21240261 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1352 193 29 29 29 chr11 100603666 100603701 -21240155 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1352 436 136 227 0 chr11 100603716 100603804 -21240052 + B1_Mur4 SINE Alu 3 110 -40 1 1352 258 221 136 23 chr11 100603725 100603813 -21240043 + MT2B LTR ERVL 175 272 -329 2 1352 739 270 44 29 chr11 100603830 100604036 -21239820 - B4A SINE B4 -76 216 8 2 1352 621 261 14 14 chr11 100604030 100604170 -21239686 - ID_B1 SINE B4 -5 219 80 2 1352 213 305 17 0 chr11 100604255 100604314 -21239542 - MER5A DNA MER1_type -15 174 115 2 1352 288 77 0 0 chr11 100604703 100604742 -21239114 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1352 237 65 0 0 chr11 100604958 100604989 -21238867 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1352 296 129 152 76 chr11 100604989 100605081 -21238775 - B1_Mm SINE Alu -21 126 28 2 1352 1197 42 7 0 chr11 100605095 100605238 -21238618 - B1_Mus1 SINE Alu 0 148 5 2 1352 214 344 83 38 chr11 100605250 100605383 -21238473 - MIRc SINE MIR -108 160 22 2 1352 1119 75 7 0 chr11 100605834 100605981 -21237875 - B1_Mus1 SINE Alu 0 148 1 2 1352 286 271 57 0 chr11 100606043 100606113 -21237743 - RSINE1 SINE B4 -48 117 44 2 1352 436 220 15 8 chr11 100606376 100606509 -21237347 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 2 1352 229 96 47 0 chr11 100609532 100609575 -21234281 + MIR SINE MIR 105 155 -121 2 1352 312 137 0 0 chr11 100610309 100610360 -21233496 + (TTC)n Simple_repeat Simple_repeat 2 52 0 2 1352 348 24 0 0 chr11 100612001 100612042 -21231814 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1352 464 258 62 8 chr11 100612162 100612177 -21231679 + B4 SINE B4 70 91 -201 2 1352 844 95 8 0 chr11 100612177 100612303 -21231553 + B1_Mus1 SINE Alu 2 128 -20 2 1352 497 250 154 17 chr11 100612766 100612817 -21231039 - B3 SINE B2 -3 213 163 2 1352 273 119 0 0 chr11 100612817 100612859 -21230997 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1352 192 77 0 0 chr11 100612866 100612892 -21230964 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 2 1352 497 250 154 17 chr11 100612892 100613007 -21230849 - B3 SINE B2 -61 155 16 2 1352 274 317 39 85 chr11 100613882 100614129 -21229727 - MIRb SINE MIR -3 259 26 2 1352 297 0 0 0 chr11 100614642 100614675 -21229181 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1352 582 54 0 0 chr11 100615324 100615398 -21228458 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1352 198 313 96 30 chr11 100615705 100615840 -21228016 + L2b LINE L2 3027 3170 -217 2 1352 213 298 103 16 chr11 100616023 100616149 -21227707 + L2b LINE L2 3238 3374 -1 2 1352 256 260 68 0 chr11 100617464 100617537 -21226319 - ID4_ SINE ID 0 83 6 2 1352 227 93 0 23 chr11 100618549 100618593 -21225263 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1352 226 224 102 0 chr11 100618701 100618750 -21225106 - MIR3 SINE MIR -46 162 109 2 1352 190 275 220 0 chr11 100618721 100618812 -21225044 + MIRm SINE MIR 17 127 -149 2 1352 212 330 142 27 chr11 100619356 100619510 -21224346 + MIR3 SINE MIR 1 170 -98 2 1352 252 0 0 0 chr11 100619790 100619818 -21224038 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1352 21 0 0 0 chr11 100620989 100621010 -21222846 + GC_rich Low_complexity Low_complexity 1 21 0 2 1352 573 115 0 0 chr11 100621475 100621562 -21222294 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2 1352 685 245 38 6 chr11 100621595 100621755 -21222101 - RSINE1 SINE B4 0 165 1 2 1352 903 301 84 88 chr11 100621778 100622244 -21221612 - MLT1C LTR MaLR -3 464 1 2 1352 490 265 91 77 chr11 100622561 100622782 -21221074 + ID_B1 SINE B4 1 224 0 2 1352 219 167 0 0 chr11 100623417 100623459 -21220397 + (CAG)n Simple_repeat Simple_repeat 2 43 0 2 1352 1202 54 0 13 chr11 100625009 100625159 -21218697 + B1_Mus1 SINE Alu 1 148 0 2 1352 588 29 0 0 chr11 100625163 100625233 -21218623 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 2 1352 195 42 0 0 chr11 100625288 100625312 -21218544 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 1352 1282 34 0 0 chr11 100625312 100625458 -21218398 - B1_Mus2 SINE Alu 0 147 2 2 1352 809 260 33 24 chr11 100625480 100625693 -21218163 - B3 SINE B2 -1 215 1 2 1352 459 0 0 0 chr11 100626073 100626124 -21217732 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1352 339 25 0 0 chr11 100626124 100626163 -21217693 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1352 1125 118 61 11 chr11 100626185 100626365 -21217491 + B2_Mm2 SINE B2 1 189 -6 2 1352 212 294 0 0 chr11 100626380 100626431 -21217425 + G-rich Low_complexity Low_complexity 3 53 0 2 1352 216 0 0 0 chr11 100626620 100626644 -21217212 + (CAGGC)n Simple_repeat Simple_repeat 1 24 0 2 1352 1244 55 0 0 chr11 100626960 100627106 -21216750 - B1_Mus1 SINE Alu 0 148 3 2 1352 776 244 17 0 chr11 100627157 100627333 -21216523 + B3 SINE B2 30 208 -8 2 1352 30 0 0 0 chr11 100627338 100627368 -21216488 + AT_rich Low_complexity Low_complexity 1 30 0 2 1352 777 98 0 0 chr11 100627540 100627652 -21216204 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 2 1352 1337 86 11 0 chr11 100627652 100627826 -21216030 - B2_Mm1t SINE B2 -16 177 2 2 1352 847 51 8 8 chr11 100628909 100629027 -21214829 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 2 1352 1090 96 0 6 chr11 100629032 100629189 -21214667 - B2_Mm2 SINE B2 -38 157 2 2 1352 216 324 110 21 chr11 100630112 100630257 -21213599 + MIRb SINE MIR 50 207 -61 2 1352 192 97 0 0 chr11 100631619 100631650 -21212206 + (CAG)n Simple_repeat Simple_repeat 2 32 0 2 1352 1312 14 0 0 chr11 100631828 100631974 -21211882 + B1_Mus2 SINE Alu 2 147 0 2 1352 1242 54 0 0 chr11 100632573 100632721 -21211135 + B1_Mus1 SINE Alu 1 148 0 2 1352 234 150 0 0 chr11 100632723 100632763 -21211093 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1352 250 176 0 105 chr11 100632801 100632858 -21210998 + ID_B1 SINE B4 150 200 -24 2 1352 897 81 0 0 chr11 100632861 100632984 -21210872 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 2 1352 1363 68 45 0 chr11 100633015 100633192 -21210664 - B2_Mm2 SINE B2 -10 185 1 2 1352 272 284 13 52 chr11 100633278 100633388 -21210468 + PB1D7 SINE Alu 17 124 -25 2 1352 754 191 7 7 chr11 100633407 100633544 -21210312 + B1_Mur4 SINE Alu 13 149 -1 2 1352 289 297 106 85 chr11 100633561 100633696 -21210160 - MER67C LTR ERV1 -15 696 567 2 1352 186 71 0 0 chr11 100633696 100633724 -21210132 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 2 1352 337 256 97 44 chr11 100633724 100633889 -21209967 - MER67C LTR ERV1 -145 566 361 2 1352 569 158 253 6 chr11 100633994 100634160 -21209696 - B3 SINE B2 -1 215 9 2 1352 342 0 0 0 chr11 100634165 100634203 -21209653 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1352 216 361 51 10 chr11 100634204 100634302 -21209554 - B3A SINE B2 -96 102 1 2 1352 655 268 40 63 chr11 100634326 100634396 -21209460 - ID_B1 SINE B4 -6 218 157 2 1352 1336 106 21 11 chr11 100634396 100634587 -21209269 - B2_Mm2 SINE B2 -1 194 2 2 1352 655 268 40 63 chr11 100634587 100634739 -21209117 - ID_B1 SINE B4 -68 156 1 2 1352 953 151 14 14 chr11 100634794 100634942 -21208914 - B1_Mur4 SINE Alu -2 148 1 2 1352 450 0 0 0 chr11 100635012 100635062 -21208794 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1352 614 180 45 0 chr11 100635063 100635174 -21208682 - MT2A LTR ERVL -71 462 347 2 1352 1663 115 136 54 chr11 100635337 100635386 -21208470 - ORR1B2 LTR MaLR -8 359 326 2 1352 1286 91 48 11 chr11 100635386 100635574 -21208282 - B2_Mm2 SINE B2 0 195 1 2 1352 1663 115 136 54 chr11 100635574 100635856 -21208000 - ORR1B2 LTR MaLR -42 325 1 2 1352 639 320 20 5 chr11 100635915 100636113 -21207743 - 7SK RNA RNA -129 202 2 2 1352 303 275 78 21 chr11 100636121 100636262 -21207594 - L1MB7 LINE L1 0 6184 6036 2 1352 940 128 35 0 chr11 100636275 100636416 -21207440 + B1_Mur3 SINE Alu 2 147 -2 2 1352 395 302 126 17 chr11 100636446 100636500 -21207356 - B4 SINE B4 -13 279 86 2 1352 557 173 21 8 chr11 100636500 100636621 -21207235 - B1_Mus2 SINE Alu -2 118 1 2 1352 198 0 0 0 chr11 100636626 100636648 -21207208 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1352 385 73 0 52 chr11 100636688 100636746 -21207110 - B2_Mm2 SINE B2 -94 101 47 2 1352 1381 79 23 0 chr11 100636828 100637005 -21206851 - B2_Mm2 SINE B2 -14 181 1 2 1352 478 287 114 0 chr11 100637156 100637323 -21206533 - L1MC LINE L1 -2361 3785 3600 2 1352 602 267 199 0 chr11 100637354 100637530 -21206326 + B3 SINE B2 1 211 -5 2 1352 1117 42 0 65 chr11 100637742 100637895 -21205961 + B1_Mus2 SINE Alu 5 147 0 2 1352 681 245 14 0 chr11 100638247 100638390 -21205466 - ID_B1 SINE B4 -76 148 4 2 1352 306 214 28 28 chr11 100638521 100638593 -21205263 - ID4 SINE ID -10 73 2 2 1352 873 208 62 0 chr11 100638849 100639027 -21204829 - B3 SINE B2 0 216 28 2 1352 920 63 0 23 chr11 100639041 100639171 -21204685 - B1_Mus2 SINE Alu 0 147 21 2 1352 256 200 16 32 chr11 100639265 100639327 -21204529 - B1_Mm SINE Alu 0 147 87 2 1352 225 0 0 0 chr11 100639327 100639352 -21204504 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 2 1352 952 77 0 0 chr11 100639352 100639482 -21204374 - B1_Mus1 SINE Alu 0 148 19 2 1352 374 173 67 0 chr11 100639497 100639572 -21204284 - B1_Mm SINE Alu -45 102 23 2 1352 257 284 241 0 chr11 100639583 100639699 -21204157 - ID_B1 SINE B4 0 224 81 2 1352 1114 78 83 68 chr11 100639720 100639912 -21203944 - B2_Mm2 SINE B2 0 195 1 2 1352 2301 147 136 51 chr11 100639913 100640400 -21203456 - RLTR12B LTR ERVK 0 528 1 2 1352 845 79 0 163 chr11 100640402 100640568 -21203288 + MTC LTR MaLR 178 316 -105 2 1352 825 158 33 32 chr11 100640709 100640895 -21202961 + B3 SINE B2 1 195 0 2 1352 482 234 80 40 chr11 100640908 100641098 -21202758 + MTC LTR MaLR 202 421 0 2 1352 256 191 176 0 chr11 100641455 100641523 -21202333 + PB1D7 SINE Alu 36 115 -5 2 1352 519 60 0 0 chr11 100641595 100641662 -21202194 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1352 1074 90 0 0 chr11 100645295 100645473 -21198383 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 1352 219 146 0 0 chr11 100645476 100645517 -21198339 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 1352 375 262 0 0 chr11 100645907 100645991 -21197865 - PB1D9 SINE Alu -1 119 36 3 1352 237 325 127 54 chr11 100645925 100646091 -21197765 - ID_B1 SINE B4 -45 179 2 3 1352 220 224 66 49 chr11 100646040 100646101 -21197755 - ID4 SINE ID -15 68 7 3 1352 406 248 44 0 chr11 100646106 100646219 -21197637 - B1F SINE Alu -6 143 26 3 1352 572 318 0 7 chr11 100646273 100646422 -21197434 + RSINE1 SINE B4 2 149 -16 3 1352 234 0 0 0 chr11 100646426 100646452 -21197404 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1352 219 338 14 0 chr11 100646573 100646644 -21197212 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1352 263 223 214 41 chr11 100646668 100646766 -21197090 - B4 SINE B4 -171 121 7 3 1352 366 323 70 8 chr11 100646873 100647001 -21196855 + MIR SINE MIR 12 147 -115 3 1352 564 176 0 0 chr11 100647010 100647101 -21196755 + ORR1C2 LTR MaLR 293 383 -1 3 1352 229 327 141 39 chr11 100647201 100647484 -21196372 + L1M5 LINE L1 5409 5720 -404 3 1352 468 0 0 0 chr11 100647616 100647668 -21196188 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1352 348 353 47 6 chr11 100647823 100647994 -21195862 + L2a LINE L2 3056 3233 -193 3 1352 215 274 20 0 chr11 100648251 100648302 -21195554 + B1_Mus1 SINE Alu 2 53 -95 3 1352 360 0 0 0 chr11 100648440 100648480 -21195376 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1352 823 179 204 11 chr11 100648955 100649136 -21194720 + B3 SINE B2 1 216 0 3 1352 286 224 20 18 chr11 100649892 100649967 -21193889 + B1F SINE Alu 32 93 -56 3 1352 826 177 188 27 chr11 100650388 100650574 -21193282 + B3 SINE B2 1 216 0 3 1352 421 215 18 53 chr11 100651128 100651241 -21192615 + MER5A1 DNA MER1_type 16 124 -42 3 1352 1336 81 0 22 chr11 100651637 100651815 -21192041 - B2_Mm2 SINE B2 -19 176 3 3 1352 577 246 54 0 chr11 100652615 100652745 -21191111 + ID_B1 SINE B4 87 223 -1 3 1352 400 269 8 68 chr11 100652735 100652970 -21190886 - RMER17D LTR ERVK -471 418 198 3 1352 275 277 85 103 chr11 100653202 100653309 -21190547 - B4 SINE B4 -6 286 223 3 1352 1077 151 124 10 chr11 100653309 100653503 -21190353 + B3 SINE B2 1 216 0 3 1352 281 158 70 0 chr11 100653503 100653560 -21190296 - B4 SINE B4 -231 61 1 3 1352 613 219 14 42 chr11 100653560 100653703 -21190153 - ID_B1 SINE B4 -1 223 85 3 1352 633 220 90 42 chr11 100653742 100653817 -21190039 + RMER20B LTR ERVK 10 80 -547 3 1352 1222 41 0 0 chr11 100653817 100653955 -21189901 + B1_Mus2 SINE Alu 1 138 -9 3 1352 416 35 17 0 chr11 100653955 100654013 -21189843 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 1352 633 179 80 46 chr11 100654019 100654245 -21189611 + RMER20B LTR ERVK 81 377 -250 3 1352 389 222 0 47 chr11 100654271 100654356 -21189500 + RMER20B LTR ERVK 546 626 -1 3 1352 300 111 0 0 chr11 100654356 100654401 -21189455 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1352 269 191 0 0 chr11 100654412 100654470 -21189386 - B1_Mur4 SINE Alu -7 143 83 3 1352 31 0 0 0 chr11 100654693 100654724 -21189132 + AT_rich Low_complexity Low_complexity 1 31 0 3 1352 651 282 28 43 chr11 100654966 100655177 -21188679 + ID_B1 SINE B4 2 209 -15 3 1352 231 310 0 0 chr11 100655178 100655236 -21188620 + G-rich Low_complexity Low_complexity 1 58 0 3 1352 213 294 78 10 chr11 100655519 100655622 -21188234 - MIRb SINE MIR -156 112 3 3 1352 546 98 0 0 chr11 100655659 100655741 -21188115 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1352 518 0 16 0 chr11 100655741 100655802 -21188054 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1352 222 288 0 101 chr11 100656125 100656214 -21187642 - B1F SINE Alu 0 149 70 3 1352 406 294 15 73 chr11 100656227 100656363 -21187493 - ID_B1 SINE B4 -1 223 96 3 1352 301 333 31 111 chr11 100656363 100656384 -21187472 - B1F2 SINE Alu 0 144 1 3 1352 650 195 0 102 chr11 100656411 100656577 -21187279 - B1_Mur3 SINE Alu 0 149 1 3 1352 579 192 71 16 chr11 100656729 100656856 -21187000 + B1F1 SINE Alu 16 149 0 3 1352 192 77 0 0 chr11 100657100 100657126 -21186730 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 3 1352 241 257 52 26 chr11 100657157 100657361 -21186495 + (CATA)n Simple_repeat Simple_repeat 1 209 0 3 1352 387 227 23 52 chr11 100657389 100657561 -21186295 + (CATATA)n Simple_repeat Simple_repeat 6 172 0 3 1352 217 294 43 22 chr11 100657573 100657712 -21186144 + (CATA)n Simple_repeat Simple_repeat 4 145 0 3 1352 269 365 77 0 chr11 100660314 100660470 -21183386 + MIRb SINE MIR 31 198 -70 3 1352 195 69 0 0 chr11 100660470 100660499 -21183357 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1352 237 167 0 0 chr11 100660499 100660541 -21183315 - ID SINE ID -173 51 10 3 1352 1115 233 0 5 chr11 100661131 100661347 -21182509 - B3 SINE B2 -1 215 1 3 1352 324 222 28 0 chr11 100661563 100661635 -21182221 - ID4_ SINE ID -8 75 2 3 1352 1085 96 0 0 chr11 100661699 100661845 -21182011 + B1_Mus1 SINE Alu 2 147 -1 3 1352 1419 55 50 0 chr11 100661870 100662052 -21181804 + B2_Mm1a SINE B2 1 191 -2 3 1352 784 192 13 20 chr11 100662112 100662261 -21181595 - B1_Mur3 SINE Alu 0 149 2 3 1352 840 200 11 61 chr11 100662265 100662446 -21181410 - B2_Mm2 SINE B2 -22 173 2 3 2 184 286 11 67 chr11 100663219 100663309 -21180547 - L2c LINE L2 -8 3379 3295 3 1353 766 220 6 0 chr11 100664276 100664435 -21179421 + B3A SINE B2 39 198 0 3 1353 486 304 130 16 chr11 100664669 100664923 -21178933 + L1MC4 LINE L1 7606 7888 -154 3 1353 724 177 11 0 chr11 100664926 100665101 -21178755 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1353 284 257 14 0 chr11 100665187 100665257 -21178599 + L1MC4a LINE L1 7812 7882 0 3 1353 250 245 78 78 chr11 100665271 100665373 -21178483 + PB1D7 SINE Alu 2 103 -17 3 1353 533 197 158 8 chr11 100665372 100665540 -21178316 - B3A SINE B2 0 216 36 3 1353 2476 145 5 17 chr11 100665541 100665956 -21177900 + MTC LTR MaLR 4 413 -8 3 1353 234 119 0 0 chr11 100665960 100666002 -21177854 - B3A SINE B2 -156 42 1 3 1353 1287 41 0 0 chr11 100667420 100667567 -21176289 - B1_Mus1 SINE Alu -1 147 1 3 1353 493 283 6 11 chr11 100667801 100667912 -21175944 - PB1 SINE Alu -39 110 4 3 1353 400 123 12 39 chr11 100668660 100668732 -21175124 + B1_Mur2 SINE Alu 54 149 0 3 1353 426 266 67 50 chr11 100668798 100668917 -21174939 + B1_Mur1 SINE Alu 27 147 -2 3 1353 255 172 243 97 chr11 100668916 100669010 -21174846 + PB1D9 SINE Alu 1 110 -10 3 1353 216 0 0 0 chr11 100669010 100669034 -21174822 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1353 658 243 77 0 chr11 100669052 100669221 -21174635 + B3A SINE B2 1 182 -16 3 1353 261 234 141 0 chr11 100669361 100669425 -21174431 - ID4_ SINE ID -9 74 2 3 1353 498 75 0 0 chr11 100669436 100669503 -21174353 + (TCC)n Simple_repeat Simple_repeat 1 67 0 3 1353 410 260 59 10 chr11 100669509 100669610 -21174246 - PB1D7 SINE Alu -12 108 3 3 1353 235 300 105 61 chr11 100669989 100670170 -21173686 - B3A SINE B2 0 198 10 3 1353 728 261 0 18 chr11 100670014 100670178 -21173678 - RSINE1 SINE B4 -2 163 3 3 1353 250 290 0 0 chr11 100670770 100670839 -21173017 - ID4 SINE ID -14 69 1 3 1353 368 230 0 0 chr11 100670853 100670927 -21172929 - B1F SINE Alu -8 141 68 3 1353 1492 54 21 0 chr11 100670932 100671118 -21172738 - B2_Mm2 SINE B2 -4 191 2 3 1353 222 122 61 0 chr11 100671127 100671176 -21172680 + T-rich Low_complexity Low_complexity 2 53 0 3 1353 914 98 75 0 chr11 100671184 100671317 -21172539 - B1_Mm SINE Alu 0 147 5 3 1353 353 262 12 0 chr11 100671417 100671501 -21172355 + ID_B1 SINE B4 82 166 -58 3 1353 441 209 33 0 chr11 100671437 100671528 -21172328 + PB1D10 SINE Alu 22 115 -2 3 1353 759 187 175 0 chr11 100671585 100671751 -21172105 + B2_Mm2 SINE B2 1 195 0 3 1353 1144 202 14 0 chr11 100672522 100672735 -21171121 + B3 SINE B2 1 216 0 3 1353 599 195 115 9 chr11 100672761 100672907 -21170949 + B4 SINE B4 2 150 -74 3 1353 627 173 18 9 chr11 100672950 100673061 -21170795 + B1F2 SINE Alu 38 149 0 3 1353 297 264 129 117 chr11 100672955 100673118 -21170738 + B4 SINE B4 128 292 0 3 1353 222 231 0 0 chr11 100673120 100673185 -21170671 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1353 1153 147 51 0 chr11 100673569 100673766 -21170090 - B3 SINE B2 -6 210 4 3 1353 974 83 226 43 chr11 100673829 100673993 -21169863 + B2_Mm2 SINE B2 2 195 0 3 1353 1238 128 83 10 chr11 100674242 100674447 -21169409 - URR1B DNA MER1_type -2 223 4 3 1353 1640 21 21 0 chr11 100674538 100674727 -21169129 + B2_Mm1a SINE B2 1 193 0 3 1353 301 269 158 21 chr11 100674748 100674843 -21169013 + PB1D7 SINE Alu 1 108 -12 3 1353 216 0 0 0 chr11 100674868 100674892 -21168964 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1353 180 0 0 0 chr11 100674892 100674911 -21168945 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 3 1353 605 208 7 78 chr11 100674930 100675071 -21168785 - B1_Mur1 SINE Alu -1 148 18 3 1353 26 0 0 0 chr11 100675222 100675248 -21168608 + AT_rich Low_complexity Low_complexity 1 26 0 3 1353 366 221 21 10 chr11 100675450 100675546 -21168310 + L1MA5 LINE L1 6135 6231 -69 3 1353 21 36 0 0 chr11 100675577 100675605 -21168251 + AT_rich Low_complexity Low_complexity 1 28 0 3 1353 555 226 193 41 chr11 100676414 100676585 -21167271 - ID_B1 SINE B4 -27 197 1 4 1353 657 261 31 13 chr11 100677091 100677250 -21166606 - RSINE1 SINE B4 -1 164 3 4 1353 324 102 0 0 chr11 100677260 100677309 -21166547 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 4 1353 709 164 0 0 chr11 100677321 100677431 -21166425 - B2_Mm2 SINE B2 -85 110 1 4 1353 581 277 25 6 chr11 100677742 100677902 -21165954 + RSINE1 SINE B4 2 164 -1 4 1353 282 128 21 0 chr11 100677913 100677960 -21165896 + L1MB7 LINE L1 6126 6173 -11 4 1353 234 0 0 0 chr11 100678562 100678588 -21165268 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1353 717 245 79 10 chr11 100678972 100679174 -21164682 + B4A SINE B4 2 217 -75 4 1353 1078 140 129 5 chr11 100679168 100679362 -21164494 - URR1B DNA MER1_type -7 218 1 4 1353 340 266 0 0 chr11 100679363 100679427 -21164429 + B4A SINE B4 227 290 -2 4 1353 801 169 0 0 chr11 100679440 100679791 -21164065 + (CA)n Simple_repeat Simple_repeat 1 351 0 4 1353 344 277 0 29 chr11 100679902 100680006 -21163850 + BC1_Mm scRNA scRNA 1 101 -51 4 1353 261 253 115 10 chr11 100680148 100680244 -21163612 + U6 snRNA snRNA 1 106 -1 4 1353 216 0 0 0 chr11 100680414 100680438 -21163418 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 1353 575 201 65 94 chr11 100680530 100680700 -21163156 + RSINE1 SINE B4 1 165 0 4 1353 316 179 0 25 chr11 100680700 100680780 -21163076 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1353 481 218 128 8 chr11 100680869 100680994 -21162862 - ID_B1 SINE B4 -19 205 66 4 1353 220 305 34 0 chr11 100682051 100682110 -21161746 + ID SINE ID 19 79 -145 4 1353 334 293 8 65 chr11 100682227 100682351 -21161505 + PB1D10 SINE Alu 1 117 0 4 1353 431 314 28 40 chr11 100682362 100682538 -21161318 + B3A SINE B2 1 174 -24 4 1353 267 79 0 0 chr11 100682544 100682582 -21161274 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1353 267 79 0 0 chr11 100682915 100682953 -21160903 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1353 281 247 224 10 chr11 100683160 100683258 -21160598 - B1F SINE Alu -9 140 22 4 1353 207 0 0 0 chr11 100683541 100683564 -21160292 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1353 719 192 56 62 chr11 100684188 100684349 -21159507 - RSINE1 SINE B4 -4 161 2 4 1353 966 155 188 27 chr11 100684511 100684697 -21159159 + B3 SINE B2 1 216 0 4 1353 715 246 108 20 chr11 100685104 100685307 -21158549 + B4 SINE B4 3 223 -69 4 1353 207 0 0 0 chr11 100685331 100685354 -21158502 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1353 183 274 35 35 chr11 100685807 100685894 -21157962 - MIRb SINE MIR -64 204 118 4 1353 736 244 19 6 chr11 100685988 100686149 -21157707 + RSINE1 SINE B4 3 165 0 4 1353 24 0 0 0 chr11 100686152 100686176 -21157680 + AT_rich Low_complexity Low_complexity 1 24 0 4 1353 876 174 135 10 chr11 100688481 100688673 -21155183 + B3 SINE B2 1 216 0 4 1353 409 217 129 65 chr11 100688688 100688834 -21155022 + B4 SINE B4 1 169 -123 4 1353 874 316 47 11 chr11 100688858 100689133 -21154723 + B4A SINE B4 8 292 0 4 1353 273 200 55 41 chr11 100689179 100689252 -21154604 + B4 SINE B4 217 290 -2 4 1353 369 0 0 0 chr11 100689260 100689301 -21154555 + HAL1-3A_ME LINE L1 1975 2015 -843 4 1353 246 217 188 0 chr11 100689311 100689380 -21154476 + ID2 SINE ID 1 82 -1 4 1353 525 191 9 37 chr11 100689385 100689494 -21154362 - ID_B1 SINE B4 -4 220 115 4 1353 224 206 156 52 chr11 100689431 100689508 -21154348 - PB1 SINE Alu -21 106 22 4 1353 241 299 15 0 chr11 100689707 100689774 -21154082 + GA-rich Low_complexity Low_complexity 3 70 0 4 1353 645 221 146 0 chr11 100690281 100690480 -21153376 + L1MB2 LINE L1 5899 6126 -45 4 1353 245 250 56 42 chr11 100690485 100690556 -21153300 + ID4_ SINE ID 2 73 -10 4 1353 185 338 0 25 chr11 100690898 100690977 -21152879 - L2b LINE L2 -13 3362 3286 4 1353 396 294 6 82 chr11 100691726 100691885 -21151971 - RSINE1 SINE B4 -17 148 2 4 1353 301 233 42 149 chr11 100692175 100692296 -21151560 + PB1D10 SINE Alu 10 117 0 4 1353 465 213 151 22 chr11 100692604 100692743 -21151113 - RSINE1 SINE B4 -6 159 3 4 1353 450 245 10 10 chr11 100693301 100693404 -21150452 - RSINE1 SINE B4 -13 152 50 4 1353 840 246 65 40 chr11 100693574 100693808 -21150048 + B4A SINE B4 7 245 -47 4 1353 243 61 0 0 chr11 100693808 100693841 -21150015 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1353 840 246 65 40 chr11 100693841 100693881 -21149975 + B4A SINE B4 246 288 -4 4 1353 505 260 6 62 chr11 100694060 100694220 -21149636 - Tigger7 DNA MER2_type -10 2481 2331 4 1353 1669 229 65 38 chr11 100694225 100694289 -21149567 + MTD LTR MaLR 5 63 -356 4 1353 760 127 110 0 chr11 100694289 100694407 -21149449 + B1_Mur3 SINE Alu 1 131 -18 4 1353 1669 229 65 38 chr11 100694407 100694742 -21149114 + MTD LTR MaLR 64 414 -5 4 1353 682 316 40 34 chr11 100694887 100695185 -21148671 - Tigger7 DNA MER2_type -2187 304 5 4 1353 266 139 263 53 chr11 100695223 100695299 -21148557 + Charlie5 DNA MER1_type 22 113 -2511 4 1353 446 229 90 18 chr11 100695305 100695416 -21148440 + ID_B1 SINE B4 99 217 -7 4 1353 273 272 79 121 chr11 100695466 100695530 -21148326 + Charlie5 DNA MER1_type 2272 2328 -296 4 1353 807 174 21 0 chr11 100695530 100695674 -21148182 + B1_Mus1 SINE Alu 2 148 0 4 1353 273 272 79 121 chr11 100695674 100695864 -21147992 + Charlie5 DNA MER1_type 2329 2522 -102 4 1353 571 192 0 98 chr11 100695864 100695997 -21147859 - PB1D7 SINE Alu 0 120 1 4 1353 273 272 79 121 chr11 100695997 100696096 -21147760 + Charlie5 DNA MER1_type 2523 2611 -13 4 1353 598 137 78 10 chr11 100696395 100696498 -21147358 - PB1D10 SINE Alu -6 111 2 4 1353 720 153 98 8 chr11 100696595 100696727 -21147129 + B1_Mur2 SINE Alu 5 148 -1 4 1353 224 311 54 0 chr11 100696979 100697053 -21146803 + MIR SINE MIR 182 259 -3 4 1353 751 178 7 29 chr11 100697055 100697194 -21146662 + B1F2 SINE Alu 2 137 -12 4 1353 236 30 0 29 chr11 100697206 100697240 -21146616 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1353 1465 68 21 0 chr11 100697284 100697474 -21146382 - B2_Mm2 SINE B2 0 195 2 4 1353 994 189 42 5 chr11 100698736 100698928 -21144928 - B3 SINE B2 -17 199 1 4 1353 582 198 22 60 chr11 100698958 100699092 -21144764 - B1_Mur1 SINE Alu -9 140 12 4 1353 201 94 0 0 chr11 100699116 100699148 -21144708 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1353 1302 20 0 0 chr11 100699148 100699294 -21144562 - B1_Mm SINE Alu 0 147 2 4 1353 21 36 0 0 chr11 100699478 100699506 -21144350 + AT_rich Low_complexity Low_complexity 1 28 0 4 1353 717 185 46 0 chr11 100699726 100699856 -21144000 - B1_Mur1 SINE Alu 0 149 14 4 1353 723 138 31 31 chr11 100699987 100700114 -21143742 + B1_Mur1 SINE Alu 23 149 0 4 1353 316 282 31 134 chr11 100700003 100700130 -21143726 + B4 SINE B4 127 240 -52 4 1353 1262 34 0 0 chr11 100700503 100700649 -21143207 + B1_Mus2 SINE Alu 2 147 0 4 1353 273 244 53 9 chr11 100701615 100701787 -21142069 - L1_Rod LINE L1 -624 5500 5257 4 1353 272 156 88 15 chr11 100701800 100701937 -21141919 + (TA)n Simple_repeat Simple_repeat 1 147 0 4 1353 317 291 12 25 chr11 100702112 100702193 -21141663 + ID SINE ID 6 85 -139 4 1353 286 273 15 0 chr11 100702747 100702813 -21141043 + ID4_ SINE ID 1 67 -16 4 1353 369 0 0 0 chr11 100702814 100702855 -21141001 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1353 48 0 0 0 chr11 100702881 100702929 -21140927 + AT_rich Low_complexity Low_complexity 1 48 0 4 1353 502 199 12 124 chr11 100702947 100703108 -21140748 + B1F SINE Alu 7 149 0 4 1353 502 281 74 18 chr11 100703794 100703957 -21139899 + B3A SINE B2 11 182 -16 4 1353 1212 43 0 0 chr11 100703982 100704123 -21139733 + B1_Mus1 SINE Alu 2 142 -6 4 1353 434 199 191 0 chr11 100704457 100704598 -21139258 + MIR SINE MIR 8 175 -87 4 1353 806 294 36 22 chr11 100704613 100704891 -21138965 + B4 SINE B4 1 282 -10 4 1353 612 220 45 0 chr11 100705172 100705304 -21138552 - B1_Mur2 SINE Alu -9 140 3 4 1353 811 209 13 0 chr11 100706338 100706496 -21137360 + ID_B1 SINE B4 48 207 -17 4 1353 733 176 18 154 chr11 100706500 100706647 -21137209 - URR1A DNA MER1_type 0 226 113 4 1353 1375 104 16 5 chr11 100706647 100706840 -21137016 - B2_Mm2 SINE B2 0 195 1 4 1353 733 176 18 154 chr11 100706840 100706913 -21136943 - URR1A DNA MER1_type -114 112 36 4 1353 200 200 0 0 chr11 100707505 100707540 -21136316 + GA-rich Low_complexity Low_complexity 2 36 0 4 1353 198 0 0 0 chr11 100707720 100707742 -21136114 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1353 480 35 0 0 chr11 100707878 100707936 -21135920 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1353 339 25 0 0 chr11 100707936 100707975 -21135881 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1353 214 241 172 92 chr11 100708142 100708229 -21135627 + PB1D10 SINE Alu 13 106 -11 4 1353 245 29 0 29 chr11 100708229 100708264 -21135592 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1353 351 0 0 0 chr11 100708369 100708408 -21135448 + (CATA)n Simple_repeat Simple_repeat 4 42 0 4 1353 427 246 96 9 chr11 100708433 100708548 -21135308 - PB1 SINE Alu -2 125 1 4 1353 952 148 0 0 chr11 100708686 100708835 -21135021 + B1_Mur4 SINE Alu 2 150 0 4 1353 330 132 0 0 chr11 100709363 100709416 -21134440 + (GGA)n Simple_repeat Simple_repeat 3 55 0 4 1353 212 0 0 35 chr11 100709743 100709772 -21134084 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1353 235 226 19 0 chr11 100709793 100709846 -21134010 + GA-rich Low_complexity Low_complexity 3 56 0 4 1353 209 297 110 73 chr11 100710555 100710664 -21133192 + MIR3 SINE MIR 85 197 -11 4 1353 273 98 0 0 chr11 100711063 100711104 -21132752 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 4 1353 26 50 0 0 chr11 100711568 100711608 -21132248 + GC_rich Low_complexity Low_complexity 1 40 0 4 1353 26 50 0 0 chr11 100711656 100711696 -21132160 + GC_rich Low_complexity Low_complexity 1 40 0 4 1353 23 33 0 0 chr11 100711861 100711891 -21131965 + GC_rich Low_complexity Low_complexity 1 30 0 5 1353 1299 164 5 5 chr11 100713231 100713446 -21130410 - URR1B DNA MER1_type 0 225 11 5 1353 227 335 45 8 chr11 100713735 100713850 -21130006 + MIRc SINE MIR 106 223 -39 5 1353 254 281 10 73 chr11 100714888 100715061 -21128795 + MIR SINE MIR 29 189 -19 5 1353 760 98 8 8 chr11 100715273 100715407 -21128449 + (GA)n Simple_repeat Simple_repeat 1 134 0 5 1353 216 0 0 0 chr11 100715883 100715907 -21127949 + (CTG)n Simple_repeat Simple_repeat 3 26 0 5 1353 198 118 0 0 chr11 100716130 100716164 -21127692 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1353 218 361 80 47 chr11 100716220 100716260 -21127596 - MIRb SINE MIR -35 233 197 5 1353 330 244 261 0 chr11 100716260 100716375 -21127481 - B1F SINE Alu -3 146 2 5 1353 218 361 80 47 chr11 100716375 100716546 -21127310 - MIRb SINE MIR -72 196 15 5 1353 405 0 0 0 chr11 100717587 100717632 -21126224 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1353 663 308 21 17 chr11 100718481 100718723 -21125133 - B4 SINE B4 -3 289 69 5 1353 312 278 213 8 chr11 100719419 100719546 -21124310 + RSINE1 SINE B4 3 155 -10 5 1353 217 297 27 13 chr11 100720046 100720121 -21123735 + MIR SINE MIR 67 142 -66 5 1353 181 313 18 116 chr11 100720992 100721104 -21122752 + MIR3 SINE MIR 84 184 -24 5 1353 207 0 0 0 chr11 100721254 100721277 -21122579 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1353 25 0 0 0 chr11 100721366 100721391 -21122465 + AT_rich Low_complexity Low_complexity 1 25 0 5 1353 645 126 22 33 chr11 100723918 100724099 -21119757 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 5 1353 211 205 0 0 chr11 100724747 100724786 -21119070 + CT-rich Low_complexity Low_complexity 2 40 0 5 1353 567 227 76 21 chr11 100724826 100724970 -21118886 - B3A SINE B2 -41 157 6 5 1353 214 217 0 21 chr11 100724978 100725025 -21118831 + CT-rich Low_complexity Low_complexity 4 49 0 5 1353 247 277 23 46 chr11 100725074 100725161 -21118695 + MIR SINE MIR 118 202 -60 5 1353 21 36 0 0 chr11 100725222 100725250 -21118606 + AT_rich Low_complexity Low_complexity 1 28 0 5 1353 195 326 92 24 chr11 100725673 100725895 -21117961 - L2a LINE L2 -340 3086 2848 5 1353 494 125 134 71 chr11 100726509 100726621 -21117235 - PB1D9 SINE Alu -1 119 1 5 1353 219 333 91 57 chr11 100726967 100727142 -21116714 - MIRb SINE MIR -20 248 68 5 1353 270 116 0 0 chr11 100727540 100727583 -21116273 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1353 726 204 0 8 chr11 100727626 100727759 -21116097 - B1_Mur1 SINE Alu 0 149 18 5 1353 511 336 26 42 chr11 100727770 100728149 -21115707 - L1M5 LINE L1 -3106 3040 2668 5 1353 1354 84 0 16 chr11 100728226 100728420 -21115436 + B2_Mm2 SINE B2 1 191 -4 5 1353 564 143 200 8 chr11 100728480 100728600 -21115256 - B1_Mus1 SINE Alu -1 147 5 5 1353 397 194 184 9 chr11 100728815 100728924 -21114932 - Charlie1b DNA MER1_type -270 253 126 5 1353 842 234 53 0 chr11 100728942 100729151 -21114705 + ID_B1 SINE B4 4 223 -1 5 1353 264 284 0 84 chr11 100729161 100729280 -21114576 + PB1D10 SINE Alu 3 111 -6 5 1353 30 27 0 0 chr11 100729337 100729374 -21114482 + AT_rich Low_complexity Low_complexity 1 37 0 5 1353 985 43 62 41 chr11 100729565 100729692 -21114164 + B1_Mus1 SINE Alu 1 135 -13 5 1353 360 0 0 0 chr11 100729692 100729732 -21114124 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1353 985 43 62 41 chr11 100729732 100729749 -21114107 + B1_Mus1 SINE Alu 136 148 0 5 1353 284 102 0 20 chr11 100729926 100729976 -21113880 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 5 1353 273 362 43 23 chr11 100730181 100730438 -21113418 - L1M5 LINE L1 -3499 2647 2386 5 1353 496 248 0 0 chr11 100730467 100730572 -21113284 - PB1D10 SINE Alu -8 109 5 5 1353 663 222 0 0 chr11 100730575 100730728 -21113128 + CT-rich Low_complexity Low_complexity 2 154 0 5 1353 447 19 0 0 chr11 100730764 100730816 -21113040 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1353 222 281 134 0 chr11 100730819 100730901 -21112955 - B3A SINE B2 -98 100 8 5 1353 661 204 13 47 chr11 100730907 100731056 -21112800 - B1_Mur3 SINE Alu -5 144 1 5 1353 353 303 75 15 chr11 100731237 100731371 -21112485 - B4A SINE B4 -150 142 1 5 1353 256 257 110 73 chr11 100731475 100731486 -21112370 - PB1D10 SINE Alu 0 117 5 5 1353 309 265 122 0 chr11 100731486 100731584 -21112272 - ID_B1 SINE B4 -29 195 86 5 1353 189 0 0 0 chr11 100732341 100732362 -21111494 + (AGCTG)n Simple_repeat Simple_repeat 4 24 0 5 1353 462 282 39 32 chr11 100732466 100732620 -21111236 + ID_B1 SINE B4 2 156 -68 5 1353 274 294 0 12 chr11 100732647 100732733 -21111123 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1353 969 99 0 7 chr11 100732840 100732983 -21110873 + MT2B LTR ERVL 1 142 -459 5 1353 3803 72 2 0 chr11 100732985 100733482 -21110374 + MERVL-int LTR ERVL 2461 2958 -2527 5 1353 5312 82 51 16 chr11 100733476 100734243 -21109613 + MERVL-int LTR ERVL 3517 4310 -1175 5 1353 238 57 0 0 chr11 100734243 100734278 -21109578 - ORR1A4 LTR MaLR -294 35 1 5 1353 222 98 39 19 chr11 100734380 100734432 -21109424 + C-rich Low_complexity Low_complexity 1 53 0 5 1353 349 325 17 0 chr11 100734658 100734775 -21109081 - MIR SINE MIR -65 197 79 5 1353 828 171 191 11 chr11 100734775 100734958 -21108898 - B3 SINE B2 0 216 1 5 1353 438 292 65 7 chr11 100737356 100737494 -21106362 + ID_B1 SINE B4 79 224 0 5 1353 547 213 47 54 chr11 100737534 100737683 -21106173 + B1_Mur2 SINE Alu 1 148 -1 5 1353 258 105 0 0 chr11 100737871 100737909 -21105947 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 5 1353 380 254 48 32 chr11 100738508 100738634 -21105222 + B1F SINE Alu 22 149 0 5 1353 1027 119 17 17 chr11 100738666 100738846 -21105010 + B2_Mm2 SINE B2 2 181 -14 5 1353 994 221 10 15 chr11 100738912 100739110 -21104746 + B3 SINE B2 7 203 -13 5 1353 234 0 0 0 chr11 100739110 100739136 -21104720 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1353 768 119 0 0 chr11 100739135 100739253 -21104603 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 1353 22 35 0 0 chr11 100739274 100739303 -21104553 + AT_rich Low_complexity Low_complexity 1 29 0 5 1353 730 234 27 59 chr11 100739316 100739538 -21104318 + B3 SINE B2 2 216 0 5 1353 226 389 70 16 chr11 100739550 100739678 -21104178 + RSINE1 SINE B4 9 143 -22 5 1353 261 0 0 0 chr11 100739683 100739712 -21104144 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1353 297 0 0 0 chr11 100739712 100739744 -21104112 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1353 665 239 135 5 chr11 100739786 100739857 -21103999 + ID SINE ID 7 77 -147 5 1353 324 0 0 0 chr11 100739857 100739893 -21103963 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 5 1353 665 239 135 5 chr11 100739893 100740014 -21103842 + ID_B1 SINE B4 78 223 -1 5 1353 796 157 60 0 chr11 100740049 100740183 -21103673 + B1_Mus1 SINE Alu 1 142 -6 5 1353 265 296 73 18 chr11 100740332 100740442 -21103414 - PB1D10 SINE Alu 0 117 2 5 1353 252 0 0 0 chr11 100744014 100744042 -21099814 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1353 536 0 16 0 chr11 100744042 100744105 -21099751 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 1353 297 260 133 48 chr11 100744108 100744213 -21099643 - RSINE1 SINE B4 -50 115 2 5 1353 903 261 56 28 chr11 100744262 100744546 -21099310 - B4A SINE B4 0 292 1 5 1353 354 190 126 52 chr11 100744614 100744725 -21099131 - PB1D9 SINE Alu -32 117 2 5 1353 474 229 55 0 chr11 100745958 100746067 -21097789 - PB1D10 SINE Alu -1 116 2 5 1353 209 33 33 0 chr11 100746650 100746680 -21097176 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1353 934 131 46 0 chr11 100747102 100747255 -21096601 + B2_Mm1t SINE B2 20 179 -14 5 1353 318 124 0 23 chr11 100747270 100747334 -21096522 + B2_Mm2 SINE B2 49 109 -107 5 1353 26 30 0 0 chr11 100749524 100749557 -21094299 + AT_rich Low_complexity Low_complexity 1 33 0 5 1353 537 147 148 44 chr11 100750570 100750705 -21093151 - B1_Mur3 SINE Alu 0 149 1 5 1353 1196 48 0 0 chr11 100751526 100751673 -21092183 - B1_Mus1 SINE Alu 0 148 2 5 1353 401 284 106 0 chr11 100752346 100752487 -21091369 + RSINE1 SINE B4 2 157 -8 5 1353 946 134 35 6 chr11 100753632 100753804 -21090052 - URR1B DNA MER1_type 0 225 49 5 1353 239 114 23 0 chr11 100754119 100754163 -21089693 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 5 1353 1162 129 0 10 chr11 100756763 100756958 -21086898 + B2_Mm2 SINE B2 2 194 -1 5 1353 1250 120 16 5 chr11 100757147 100757340 -21086516 + B2_Mm2 SINE B2 1 195 0 5 1353 507 261 65 13 chr11 100757922 100758077 -21085779 + RSINE1 SINE B4 3 165 0 5 1353 998 108 11 17 chr11 100758085 100758264 -21085592 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 5 1353 520 163 15 23 chr11 100758269 100758401 -21085455 + GA-rich Low_complexity Low_complexity 1 131 0 5 1353 223 304 43 14 chr11 100758459 100758529 -21085327 - ID4 SINE ID -3 80 9 5 1353 268 296 137 15 chr11 100758877 100759012 -21084844 - L1M5 LINE L1 -560 5680 5534 5 1353 205 51 25 25 chr11 100759249 100759289 -21084567 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1353 651 48 0 0 chr11 100759619 100759702 -21084154 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 1353 561 112 115 49 chr11 100760444 100760566 -21083290 - B1_Mus2 SINE Alu 0 147 18 5 1353 310 293 96 81 chr11 100760614 100760811 -21083045 + MLT1L LTR MaLR 376 575 -35 5 1353 543 211 9 0 chr11 100760975 100761089 -21082767 + PB1D9 SINE Alu 1 115 -5 5 1353 229 203 39 104 chr11 100761229 100761306 -21082550 - ID4_ SINE ID 0 83 12 5 1353 8263 173 28 37 chr11 100761490 100763642 -21080214 + Lx6 LINE L1 5167 7291 -169 5 1353 216 0 0 0 chr11 100763648 100763672 -21080184 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 6 1353 21 0 0 0 chr11 100763995 100764016 -21079840 + AT_rich Low_complexity Low_complexity 1 21 0 6 1353 752 148 44 15 chr11 100764211 100764348 -21079508 + B1_Mus2 SINE Alu 2 142 -5 6 1353 342 67 0 0 chr11 100764349 100764394 -21079462 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1353 234 0 0 0 chr11 100764394 100764419 -21079437 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1353 276 30 0 0 chr11 100765182 100765215 -21078641 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 6 1353 23 54 0 0 chr11 100765364 100765401 -21078455 + AT_rich Low_complexity Low_complexity 1 37 0 6 1353 25 31 0 0 chr11 100765526 100765558 -21078298 + AT_rich Low_complexity Low_complexity 1 32 0 6 1353 860 176 7 13 chr11 100765562 100765712 -21078144 + B1_Mur4 SINE Alu 2 150 0 6 1353 488 234 23 61 chr11 100765778 100765910 -21077946 + B1F SINE Alu 1 127 -22 6 1353 312 240 0 13 chr11 100765916 100765992 -21077864 + B1F SINE Alu 75 149 0 6 1353 233 75 0 24 chr11 100766129 100766170 -21077686 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 6 1353 390 293 0 29 chr11 100766685 100766787 -21077069 + PB1D10 SINE Alu 17 115 -2 6 1353 24 0 0 0 chr11 100767247 100767271 -21076585 + AT_rich Low_complexity Low_complexity 1 24 0 6 1353 222 254 48 0 chr11 100767512 100767575 -21076281 + ID4 SINE ID 2 67 -16 6 1353 521 184 197 38 chr11 100767977 100768132 -21075724 - B3 SINE B2 -1 215 52 6 1353 281 209 45 0 chr11 100768623 100768690 -21075166 + PB1D10 SINE Alu 40 109 -8 6 1353 323 244 73 37 chr11 100768693 100768829 -21075027 + B1F SINE Alu 1 141 -8 6 1353 271 263 66 66 chr11 100768867 100768973 -21074883 + B1F2 SINE Alu 10 115 -2 6 1353 231 295 105 18 chr11 100768976 100769090 -21074766 + ID_B1 SINE B4 1 124 -100 6 1353 374 265 78 0 chr11 100770163 100770265 -21073591 + ID_B1 SINE B4 90 199 -25 6 1353 347 237 13 0 chr11 100770403 100770479 -21073377 + ID4 SINE ID 7 83 0 6 1353 436 298 0 39 chr11 100770561 100770690 -21073166 + ID_B1 SINE B4 76 199 -25 6 1353 496 233 24 40 chr11 100770576 100770701 -21073155 + B1F SINE Alu 10 132 -17 6 1353 1578 26 5 0 chr11 100770716 100770907 -21072949 - B2_Mm1t SINE B2 0 193 2 6 1353 491 259 30 15 chr11 100770951 100771084 -21072772 + ID_B1 SINE B4 88 222 -2 6 1353 386 305 79 79 chr11 100771097 100771261 -21072595 + RSINE1 SINE B4 2 165 0 6 1353 236 182 0 35 chr11 100771329 100771386 -21072470 + B4 SINE B4 37 91 -201 6 1353 828 204 89 38 chr11 100771400 100771635 -21072221 + Lx7 LINE L1 7450 7696 0 6 1353 590 283 128 5 chr11 100771640 100771828 -21072028 + B4 SINE B4 82 292 0 6 1353 269 250 229 0 chr11 100772904 100773000 -21070856 - PB1D9 SINE Alu -2 118 1 6 1353 219 333 30 0 chr11 100773031 100773059 -21070797 + B4 SINE B4 56 85 -207 6 1353 258 244 115 0 chr11 100773059 100773137 -21070719 + B1F SINE Alu 1 87 -62 6 1353 688 271 14 23 chr11 100773197 100773412 -21070444 + B3 SINE B2 4 216 0 6 1353 1224 80 51 0 chr11 100773472 100773648 -21070208 + B2_Mm2 SINE B2 2 186 -9 6 1353 37 39 0 0 chr11 100774025 100774076 -21069780 + AT_rich Low_complexity Low_complexity 1 51 0 6 1353 857 245 89 54 chr11 100774486 100774766 -21069090 + B4 SINE B4 1 290 -2 6 1353 268 187 265 7 chr11 100774929 100775080 -21068776 + MER33 DNA MER1_type 94 283 -41 6 1353 843 172 21 0 chr11 100775080 100775225 -21068631 + B1_Mur3 SINE Alu 2 149 0 6 1353 290 229 129 0 chr11 100776068 100776138 -21067718 + ID4_ SINE ID 1 79 -4 6 1353 1099 177 204 10 chr11 100776525 100776833 -21067023 + ORR1C1 LTR MaLR 9 376 -2 6 1353 797 261 9 36 chr11 100776865 100777084 -21066772 - B3 SINE B2 -3 213 1 6 1353 563 304 0 0 chr11 100777481 100777619 -21066237 + ID_B1 SINE B4 82 219 -5 6 1353 613 207 17 0 chr11 100777673 100777789 -21066067 - B1_Mur1 SINE Alu -27 122 5 6 1353 2631 179 26 12 chr11 100777867 100778375 -21065481 + RLTR11A2 LTR ERVK 11 525 -2 6 1353 196 227 42 70 chr11 100778696 100778767 -21065089 + L2 LINE L2 2486 2554 -865 6 1353 432 360 22 7 chr11 100778979 100779116 -21064740 + ID_B1 SINE B4 78 216 -8 6 1353 1112 183 36 36 chr11 100779212 100779433 -21064423 + ID_B1 SINE B4 4 224 0 6 1353 219 178 0 0 chr11 100779433 100779473 -21064383 + A-rich Low_complexity Low_complexity 1 40 0 6 1353 591 256 0 8 chr11 100779556 100779674 -21064182 - RSINE1 SINE B4 -45 120 4 6 1353 268 277 52 21 chr11 100779674 100779770 -21064086 - MIRc SINE MIR -102 166 68 6 1353 898 127 49 7 chr11 100779980 100780123 -21063733 + B1_Mur4 SINE Alu 1 149 -1 6 1353 208 344 19 86 chr11 100780878 100780983 -21062873 + L2b LINE L2 3257 3354 -21 6 1353 369 0 0 0 chr11 100780986 100781027 -21062829 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1353 803 131 33 0 chr11 100781079 100781201 -21062655 - B1_Mm SINE Alu -21 126 1 6 1353 286 238 154 0 chr11 100781357 100781474 -21062382 + B4A SINE B4 2 146 -146 6 1353 566 242 0 0 chr11 100781648 100781747 -21062109 + PB1D7 SINE Alu 15 113 -7 6 1353 204 125 0 0 chr11 100781761 100781793 -21062063 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 6 1353 569 283 20 7 chr11 100782083 100782229 -21061627 - B1F1 SINE Alu -1 148 1 6 1353 377 285 110 29 chr11 100782295 100782550 -21061306 + MLT1G LTR MaLR 248 563 -28 6 1353 362 302 64 12 chr11 100782683 100782854 -21061002 + L2 LINE L2 2249 2428 -991 6 1353 186 262 113 16 chr11 100783028 100783090 -21060766 - MIRm SINE MIR -14 262 195 6 1353 510 199 8 14 chr11 100783621 100783732 -21060124 + PB1D10 SINE Alu 1 108 -41 6 1353 257 250 19 0 chr11 100783764 100783816 -21060040 + B1F SINE Alu 1 53 -96 6 1353 1606 193 37 164 chr11 100784136 100784564 -21059292 + ORR1D1 LTR MaLR 1 374 0 6 1353 381 169 0 53 chr11 100784796 100784871 -21058985 + ID SINE ID 2 72 -152 6 1353 1117 142 104 16 chr11 100785050 100785243 -21058613 + B3 SINE B2 2 211 -5 6 1353 458 281 49 61 chr11 100785358 100785521 -21058335 + RSINE1 SINE B4 4 164 -1 6 1353 28 29 0 0 chr11 100785536 100785571 -21058285 + AT_rich Low_complexity Low_complexity 1 35 0 6 1353 646 147 10 0 chr11 100785740 100785842 -21058014 + B1F2 SINE Alu 46 148 -1 6 1353 261 118 0 0 chr11 100786246 100786297 -21057559 + (A)n Simple_repeat Simple_repeat 1 51 0 6 1353 321 305 21 14 chr11 100786475 100786618 -21057238 + B1F SINE Alu 1 144 -5 6 1353 222 232 52 35 chr11 100786632 100786690 -21057166 + ID2 SINE ID 3 61 -22 6 1353 908 176 0 7 chr11 100786698 100786847 -21057009 - B1_Mur3 SINE Alu -1 148 1 6 1353 415 115 32 6 chr11 100786953 100787026 -21056830 + B1_Mus1 SINE Alu 31 102 -18 6 1353 331 266 161 87 chr11 100787038 100787417 -21056439 + L1MC2 LINE L1 5704 6110 -234 6 1353 217 352 38 0 chr11 100787419 100787524 -21056332 + PB1D7 SINE Alu 3 111 -9 6 1353 324 259 72 22 chr11 100787527 100787665 -21056191 + L1MC2 LINE L1 6092 6236 -108 6 1353 397 297 50 8 chr11 100787700 100787819 -21056037 + B1F2 SINE Alu 17 140 -9 6 1353 432 0 0 0 chr11 100787820 100787868 -21055988 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1353 629 234 185 5 chr11 100787915 100788104 -21055752 + ID_B1 SINE B4 2 224 0 6 1353 286 191 147 0 chr11 100788127 100788195 -21055661 + ID_B1 SINE B4 142 219 -5 6 1353 541 228 70 0 chr11 100788360 100788474 -21055382 + RSINE1 SINE B4 3 124 -41 6 1353 26 30 0 0 chr11 100788501 100788534 -21055322 + AT_rich Low_complexity Low_complexity 1 33 0 6 1353 770 156 59 0 chr11 100788544 100788679 -21055177 + B1_Mus1 SINE Alu 1 143 -5 6 1353 821 169 35 7 chr11 100789033 100789176 -21054680 + B1_Mm SINE Alu 1 147 0 6 1353 1123 63 35 0 chr11 100789178 100789320 -21054536 + B1_Mm SINE Alu 1 147 0 6 1353 297 135 0 0 chr11 100789320 100789372 -21054484 + (A)n Simple_repeat Simple_repeat 1 52 0 6 1353 186 71 0 0 chr11 100789745 100789773 -21054083 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1353 1050 68 45 0 chr11 100789773 100789905 -21053951 - B1_Mm SINE Alu -9 138 1 6 1353 486 301 60 0 chr11 100790034 100790167 -21053689 + B1F1 SINE Alu 9 149 0 6 1353 240 331 53 53 chr11 100790293 100790424 -21053432 - Charlie1 DNA MER1_type -148 2633 2503 6 1353 499 252 0 75 chr11 100790427 100790573 -21053283 + RSINE1 SINE B4 3 137 -28 6 1353 1087 105 7 0 chr11 100790635 100790778 -21053078 - B1_Mur4 SINE Alu -6 144 1 6 1353 378 102 0 17 chr11 100790807 100790867 -21052989 - B1_Mus2 SINE Alu 0 147 89 6 1353 326 254 115 66 chr11 100790921 100791043 -21052813 + ID_B1 SINE B4 79 206 -18 6 1353 221 83 0 27 chr11 100791043 100791080 -21052776 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 6 1353 548 321 110 82 chr11 100791082 100791729 -21052127 - Charlie1 DNA MER1_type -302 2479 1815 6 1353 422 275 75 15 chr11 100791933 100792066 -21051790 - B1F2 SINE Alu -8 141 1 6 1353 256 239 76 0 chr11 100792069 100792161 -21051695 - L1MC1 LINE L1 -23 6310 6212 6 1353 222 261 0 0 chr11 100792384 100792430 -21051426 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1353 366 23 0 0 chr11 100793368 100793411 -21050445 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1353 718 180 0 79 chr11 100793619 100793758 -21050098 + B1_Mur1 SINE Alu 10 137 -12 7 1353 182 118 29 0 chr11 100793763 100793797 -21050059 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 7 1353 387 194 0 27 chr11 100793796 100793907 -21049949 + (TG)n Simple_repeat Simple_repeat 1 108 0 7 1353 279 342 0 26 chr11 100793933 100794011 -21049845 - ID4_ SINE ID -6 77 2 7 1353 269 361 20 10 chr11 100794022 100794120 -21049736 - PB1D10 SINE Alu -9 108 10 7 1353 962 122 119 4 chr11 100794159 100794339 -21049517 + B2_Mm2 SINE B2 1 203 -13 7 169 216 200 0 0 chr11 100794339 100794384 -21049472 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1354 21 0 0 0 chr11 100794386 100794407 -21049449 + AT_rich Low_complexity Low_complexity 1 21 0 7 1354 623 258 0 159 chr11 100794434 100794544 -21049312 - RSINE1 SINE B4 -2 163 70 7 1354 1238 54 0 0 chr11 100794544 100794691 -21049165 + B1_Mm SINE Alu 1 147 0 7 1354 623 258 0 159 chr11 100794691 100794769 -21049087 - RSINE1 SINE B4 -96 69 5 7 1354 852 268 19 5 chr11 100794797 100795003 -21048853 - ID_B1 SINE B4 -13 211 3 7 1354 424 316 97 77 chr11 100795364 100795611 -21048245 - MIRb SINE MIR -2 266 15 7 1354 21 0 0 0 chr11 100796429 100796450 -21047406 + AT_rich Low_complexity Low_complexity 1 21 0 7 1354 1135 100 0 0 chr11 100796473 100796623 -21047233 + B1_Mur4 SINE Alu 1 150 0 7 1354 181 320 13 13 chr11 100796726 100796802 -21047054 - MIRm SINE MIR -186 82 7 7 1354 377 229 50 40 chr11 100796941 100797041 -21046815 - B1F SINE Alu -1 148 48 7 1354 264 353 83 0 chr11 100797053 100797186 -21046670 - B1F2 SINE Alu -5 144 1 7 1354 453 294 0 139 chr11 100797190 100797356 -21046500 - B1F SINE Alu -6 143 1 7 1354 585 220 33 1 chr11 100797376 100797504 -21046352 - B1_Mur4 SINE Alu -3 146 6 7 1354 390 91 0 0 chr11 100797520 100797575 -21046281 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1354 224 324 0 29 chr11 100797951 100798021 -21045835 + polypurine Low_complexity Low_complexity 4 71 0 7 1354 227 134 75 0 chr11 100798452 100798519 -21045337 + GA-rich Low_complexity Low_complexity 2 73 0 7 1354 254 240 67 20 chr11 100798672 100798756 -21045100 + MIR SINE MIR 75 167 -109 7 1354 942 180 39 0 chr11 100798948 100799126 -21044730 + B3 SINE B2 32 216 0 7 1354 242 109 0 42 chr11 100799996 100800044 -21043812 + G-rich Low_complexity Low_complexity 5 50 0 7 1354 374 301 66 75 chr11 100801659 100801871 -21041985 + B3 SINE B2 1 210 -6 7 1354 246 233 253 53 chr11 100802456 100802551 -21041305 - PB1D9 SINE Alu -3 117 4 7 1354 1230 89 65 22 chr11 100802565 100802749 -21041107 - B2_Mm2 SINE B2 -1 194 3 7 1354 914 123 7 33 chr11 100802756 100802907 -21040949 - B1_Mus1 SINE Alu -1 147 1 7 1354 243 325 25 25 chr11 100803003 100803082 -21040774 - Charlie24 DNA MER1_type 0 2450 2372 7 1354 270 0 0 0 chr11 100803414 100803444 -21040412 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1354 220 327 48 0 chr11 100803617 100803721 -21040135 - PB1D10 SINE Alu -4 113 5 7 1354 243 0 0 0 chr11 100803748 100803775 -21040081 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1354 297 286 0 38 chr11 100803870 100803950 -21039906 + B4A SINE B4 1 77 -215 7 1354 531 268 54 40 chr11 100804030 100804178 -21039678 + RSINE1 SINE B4 15 164 -1 7 1354 531 0 0 0 chr11 100804178 100804237 -21039619 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1354 3363 57 2 37 chr11 100804257 100804302 -21039554 - Lx3_Mus LINE L1 0 7009 6970 7 1354 3392 36 13 0 chr11 100804302 100804693 -21039163 - MTA_Mm LTR MaLR 0 396 1 7 1354 3363 57 2 37 chr11 100804693 100805102 -21038754 - Lx3_Mus LINE L1 -40 6969 6571 7 1354 222 37 0 0 chr11 100805113 100805140 -21038716 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7 1354 1193 96 0 6 chr11 100805140 100805300 -21038556 - B2_Mm2 SINE B2 -34 161 2 7 1354 195 298 0 0 chr11 100805880 100805927 -21037929 - L2b LINE L2 -13 3362 3316 7 1354 325 265 45 86 chr11 100806142 100806275 -21037581 - B1F SINE Alu -8 141 3 7 1354 351 258 0 73 chr11 100806309 100806405 -21037451 - ID_B1 SINE B4 -1 223 135 7 1354 832 237 62 69 chr11 100806404 100806673 -21037183 - RMER19C LTR ERVK -199 412 137 7 1354 216 296 0 0 chr11 100806646 100806690 -21037166 - B1F2 SINE Alu -104 45 2 7 1354 843 326 129 6 chr11 100806708 100807057 -21036799 + MLT1G1 LTR MaLR 154 545 -34 7 1354 285 285 24 107 chr11 100807042 100807104 -21036752 + MT2B2 LTR ERVL 111 158 -426 7 1354 645 254 24 0 chr11 100807104 100807230 -21036626 + B1_Mur1 SINE Alu 2 130 -19 7 1354 257 0 30 0 chr11 100807232 100807265 -21036591 + (CAA)n Simple_repeat Simple_repeat 2 35 0 7 1354 407 207 60 62 chr11 100807269 100807425 -21036431 + B3A SINE B2 37 188 -7 7 1354 843 150 30 0 chr11 100807435 100807568 -21036288 + B1_Mm SINE Alu 3 139 -8 7 1354 393 22 0 0 chr11 100807582 100807628 -21036228 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1354 296 203 92 15 chr11 100807630 100807666 -21036190 - B2_Mm2 SINE B2 -124 71 36 7 1354 369 0 0 0 chr11 100807666 100807707 -21036149 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1354 296 203 92 15 chr11 100807707 100807735 -21036121 - B2_Mm2 SINE B2 -160 35 3 7 1354 30 0 0 0 chr11 100807740 100807770 -21036086 + AT_rich Low_complexity Low_complexity 1 30 0 7 1354 198 309 29 0 chr11 100808662 100808730 -21035126 + MIRm SINE MIR 199 268 -8 7 1354 1046 221 18 5 chr11 100808732 100808950 -21034906 + ID_B1 SINE B4 4 224 0 7 1354 514 298 121 60 chr11 100808955 100809137 -21034719 + B3A SINE B2 3 195 -3 7 1354 733 143 69 38 chr11 100809147 100809278 -21034578 + B1_Mur3 SINE Alu 15 149 0 7 1354 1277 109 11 0 chr11 100809284 100809467 -21034389 - B2_Mm1t SINE B2 -7 186 2 7 1354 535 196 170 0 chr11 100809493 100809605 -21034251 + B1_Mur1 SINE Alu 5 135 -14 7 1354 207 261 0 0 chr11 100809659 100809705 -21034151 + CT-rich Low_complexity Low_complexity 3 48 0 7 1354 210 105 0 0 chr11 100809977 100810015 -21033841 + (C)n Simple_repeat Simple_repeat 1 38 0 7 1354 1824 200 14 128 chr11 100810015 100810221 -21033635 + Lx9 LINE L1 6971 7156 -488 7 1354 1289 34 0 0 chr11 100810221 100810367 -21033489 + B1_Mm SINE Alu 2 147 0 7 1354 1824 200 14 128 chr11 100810367 100810732 -21033124 + Lx9 LINE L1 7157 7477 -167 7 1354 251 340 18 54 chr11 100810739 100810851 -21033005 - RMER12 LTR ERVK -466 856 749 7 1354 233 194 62 41 chr11 100810851 100810948 -21032908 + Lx9 LINE L1 7543 7641 -3 7 1354 1316 86 27 11 chr11 100810953 100811141 -21032715 + B2_Mm2 SINE B2 1 191 -4 7 1354 255 93 0 0 chr11 100811559 100811602 -21032254 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1354 207 0 0 0 chr11 100811599 100811622 -21032234 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1354 1656 201 5 78 chr11 100811635 100811672 -21032184 - ORR1D1 LTR MaLR -29 345 316 7 1354 204 40 0 0 chr11 100811672 100811697 -21032159 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 7 1354 1656 201 5 78 chr11 100811697 100812031 -21031825 - ORR1D1 LTR MaLR -59 315 1 7 1354 236 28 56 0 chr11 100812124 100812160 -21031696 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1354 611 250 45 8 chr11 100812453 100812586 -21031270 + ID_B1 SINE B4 87 224 0 7 1354 263 254 0 17 chr11 100812611 100812671 -21031185 + B1_Mur4 SINE Alu 36 94 -56 7 1354 248 265 39 10 chr11 100812777 100812880 -21030976 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1354 246 269 130 29 chr11 100812899 100812968 -21030888 + B4 SINE B4 217 292 0 7 1354 227 333 92 13 chr11 100813965 100814041 -21029815 - ID4_ SINE ID 0 83 2 7 1354 247 117 32 32 chr11 100814057 100814119 -21029737 + (TCTCTG)n Simple_repeat Simple_repeat 3 64 0 7 1354 896 149 0 39 chr11 100814271 100814425 -21029431 + B1_Mus1 SINE Alu 1 148 0 7 1354 394 270 24 79 chr11 100814279 100814444 -21029412 + B4A SINE B4 91 246 -46 7 1354 315 146 0 0 chr11 100814444 100814499 -21029357 + (GGA)n Simple_repeat Simple_repeat 1 55 0 7 1354 202 42 0 0 chr11 100814499 100814523 -21029333 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 1354 524 266 24 8 chr11 100814528 100814653 -21029203 - B1F SINE Alu -21 128 2 7 1354 339 302 60 90 chr11 100814703 100814936 -21028920 + MLT1K LTR MaLR 196 421 -174 7 1354 904 226 6 17 chr11 100815089 100815269 -21028587 - B3 SINE B2 -2 214 37 7 1354 474 328 53 70 chr11 100815279 100815466 -21028390 - B3A SINE B2 -6 192 9 7 1354 709 239 83 30 chr11 100815668 100815689 -21028167 + B3A SINE B2 7 38 -160 7 1354 336 103 0 0 chr11 100815689 100815747 -21028109 + (CGTG)n Simple_repeat Simple_repeat 4 61 0 7 1354 709 243 84 36 chr11 100815747 100815912 -21027944 + B3A SINE B2 39 194 -1 7 1354 237 300 0 0 chr11 100815953 100816003 -21027853 + ID2 SINE ID 5 54 -29 7 1354 216 86 0 0 chr11 100816040 100816075 -21027781 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1354 291 183 83 0 chr11 100816117 100816177 -21027679 + PB1D9 SINE Alu 43 107 -13 7 1354 798 11 0 0 chr11 100816183 100816274 -21027582 + (GGGA)n Simple_repeat Simple_repeat 2 92 0 7 1354 393 22 0 0 chr11 100816435 100816481 -21027375 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1354 515 228 143 19 chr11 100816710 100816871 -21026985 + B4 SINE B4 112 292 0 7 1354 234 246 132 0 chr11 100817722 100817804 -21026052 + MIRm SINE MIR 62 166 -96 7 1354 267 103 0 0 chr11 100817925 100817964 -21025892 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 7 1354 29 0 0 0 chr11 100818240 100818269 -21025587 + AT_rich Low_complexity Low_complexity 1 29 0 7 1354 471 226 29 0 chr11 100819313 100819415 -21024441 - B1F SINE Alu -5 144 40 7 1354 248 224 119 30 chr11 100819348 100819449 -21024407 - RLTR25B LTR ERVK -521 507 398 7 1354 363 311 48 24 chr11 100819415 100819436 -21024420 - ID_B1 SINE B4 -3 219 94 7 1354 1835 73 29 111 chr11 100822372 100822679 -21021177 + L1Md_F2 LINE L1 6301 6582 0 8 1354 413 0 39 0 chr11 100822775 100822827 -21021029 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 8 1354 854 168 0 53 chr11 100822835 100822986 -21020870 + B1_Mur1 SINE Alu 2 144 -5 8 1354 249 33 0 0 chr11 100823050 100823080 -21020776 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1354 1156 83 14 0 chr11 100823294 100823439 -21020417 + B1_Mm SINE Alu 1 147 0 8 1354 309 169 0 0 chr11 100823441 100823500 -21020356 + GA-rich Low_complexity Low_complexity 2 60 0 8 1354 908 107 41 48 chr11 100824310 100824457 -21019399 + B1_Mur3 SINE Alu 2 147 -2 8 1354 463 335 77 14 chr11 100824684 100824893 -21018963 + MER106A DNA MER1_type 11 232 -4 8 1354 276 307 0 0 chr11 100825284 100825363 -21018493 + ID2 SINE ID 7 85 -67 8 1354 453 257 18 0 chr11 100827105 100827218 -21016638 - PB1D10 SINE Alu -2 115 1 8 1354 238 365 0 45 chr11 100827219 100827331 -21016525 + MIR3 SINE MIR 59 165 -43 8 1354 301 130 19 0 chr11 100827378 100827432 -21016424 - RLTR16 LTR ERVK 0 505 451 8 1354 793 164 0 15 chr11 100828258 100828388 -21015468 + B1_Mur4 SINE Alu 2 129 -21 8 1354 222 37 0 0 chr11 100828435 100828462 -21015394 + (TAA)n Simple_repeat Simple_repeat 1 27 0 8 1354 812 151 165 16 chr11 100829114 100829302 -21014554 - B3 SINE B2 0 216 1 8 1354 180 358 64 16 chr11 100832676 100832801 -21011055 - MIR3 SINE MIR -42 166 36 8 1354 897 116 7 26 chr11 100833309 100833460 -21010396 + B1_Mus1 SINE Alu 1 148 0 8 1354 729 182 27 20 chr11 100833495 100833641 -21010215 + B1_Mur1 SINE Alu 2 148 -1 8 1354 537 58 0 0 chr11 100833714 100833783 -21010073 + (GA)n Simple_repeat Simple_repeat 2 70 0 8 1354 447 268 133 16 chr11 100833798 100833963 -21009893 + B3 SINE B2 1 175 -20 8 1354 877 124 0 70 chr11 100834097 100834253 -21009603 + B1_Mur3 SINE Alu 5 149 0 8 1354 929 194 9 173 chr11 100834261 100834486 -21009370 + B3 SINE B2 7 210 -6 8 1354 414 0 0 0 chr11 100834487 100834533 -21009323 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1354 538 208 78 23 chr11 100834541 100834669 -21009187 - RSINE1 SINE B4 -29 136 2 8 1354 400 236 94 0 chr11 100834799 100834905 -21008951 - PB1D7 SINE Alu 0 120 5 8 1354 342 273 0 66 chr11 100835030 100835136 -21008720 + PB1D10 SINE Alu 19 117 0 8 1354 1393 89 16 5 chr11 100835137 100835329 -21008527 + B2_Mm2 SINE B2 1 194 -1 8 1354 360 64 0 0 chr11 100835329 100835376 -21008480 + (GGA)n Simple_repeat Simple_repeat 2 48 0 8 1354 521 248 90 8 chr11 100835376 100835510 -21008346 + B1F2 SINE Alu 5 149 0 8 1354 22 70 0 0 chr11 100835549 100835592 -21008264 + AT_rich Low_complexity Low_complexity 1 43 0 8 1354 308 211 0 0 chr11 100835628 100835685 -21008171 - L1MC LINE L1 -2085 5797 5741 8 1354 342 0 0 0 chr11 100836288 100836326 -21007530 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1354 1035 95 14 0 chr11 100836877 100837024 -21006832 + B1_Mur4 SINE Alu 2 150 0 8 1354 662 235 38 0 chr11 100837071 100837203 -21006653 + ID_B1 SINE B4 82 218 -6 8 1354 677 172 8 8 chr11 100837329 100837458 -21006398 - B1_Mur2 SINE Alu -20 129 1 8 1354 229 241 25 50 chr11 100837461 100837592 -21006264 - B3 SINE B2 0 216 62 8 1354 37 23 0 0 chr11 100837660 100837704 -21006152 + AT_rich Low_complexity Low_complexity 1 44 0 8 1354 1245 34 0 0 chr11 100837708 100837855 -21006001 + B1_Mm SINE Alu 1 147 0 8 1354 185 0 40 0 chr11 100837875 100837900 -21005956 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1354 675 251 98 0 chr11 100837914 100838077 -21005779 - B3A SINE B2 -11 187 9 8 1354 476 271 97 7 chr11 100838200 100838345 -21005511 + B3 SINE B2 59 216 0 8 1354 284 272 102 88 chr11 100838903 100838973 -21004883 + B1F SINE Alu 1 69 -80 8 1354 775 230 62 0 chr11 100838973 100839151 -21004705 - B3A SINE B2 -6 192 4 8 1354 284 272 102 88 chr11 100839151 100839217 -21004639 + B1F SINE Alu 70 139 -10 8 1354 272 27 27 0 chr11 100839217 100839254 -21004602 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 8 1354 408 258 33 6 chr11 100839313 100839482 -21004374 + ID_B1 SINE B4 4 221 -3 8 1354 1278 83 39 0 chr11 100839643 100839804 -21004052 + B2_Mm2 SINE B2 2 162 -33 8 1354 267 31 0 0 chr11 100839804 100839836 -21004020 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 8 1354 1278 83 39 0 chr11 100839836 100839855 -21004001 + B2_Mm2 SINE B2 163 188 -7 8 1354 548 288 45 6 chr11 100839867 100840024 -21003832 + RSINE1 SINE B4 3 165 0 8 1354 1568 37 0 40 chr11 100840061 100840259 -21003597 + B2_Mm2 SINE B2 1 190 -5 8 1354 1060 64 0 0 chr11 100840267 100840407 -21003449 + B1_Mus1 SINE Alu 9 148 0 8 1354 410 269 45 90 chr11 100840268 100840423 -21003433 + B4A SINE B4 94 241 -51 8 1354 512 252 26 33 chr11 100840588 100840740 -21003116 + ID_B1 SINE B4 66 216 -8 8 1354 1101 202 25 0 chr11 100840748 100840946 -21002910 + B3 SINE B2 2 204 -12 8 1354 212 31 62 0 chr11 100841770 100841802 -21002054 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1354 918 152 0 7 chr11 100841802 100841942 -21001914 - B1_Mus1 SINE Alu -7 141 2 8 1354 522 250 25 8 chr11 100841957 100842078 -21001778 + B1F SINE Alu 6 128 -21 8 1354 316 20 38 38 chr11 100842079 100842132 -21001724 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 8 1354 499 258 78 0 chr11 100842297 100842425 -21001431 - ID_B1 SINE B4 0 224 87 8 1354 575 252 15 0 chr11 100842486 100842617 -21001239 - B1_Mur1 SINE Alu -16 133 1 8 1354 407 314 71 35 chr11 100842617 100842684 -21001172 - ID_B1 SINE B4 -16 208 4 8 1354 563 301 94 59 chr11 100842692 100843147 -21000709 - L1MC4 LINE L1 -411 7631 7161 8 1354 22 35 0 0 chr11 100843147 100843176 -21000680 + AT_rich Low_complexity Low_complexity 1 29 0 8 1354 546 226 236 6 chr11 100843187 100843352 -21000504 - B3 SINE B2 -11 205 3 8 1354 298 298 35 9 chr11 100843691 100843806 -21000050 - L1MC4 LINE L1 -1020 7022 6905 8 1354 474 155 20 10 chr11 100843837 100843935 -20999921 + PB1D9 SINE Alu 2 100 -20 8 1354 741 102 0 0 chr11 100844123 100844231 -20999625 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 8 1354 516 294 68 24 chr11 100844411 100844617 -20999239 - ID_B1 SINE B4 -8 216 2 8 1354 385 213 10 50 chr11 100845091 100845190 -20998666 - 7SK RNA RNA -42 289 195 8 1354 21 36 0 0 chr11 100845342 100845370 -20998486 + AT_rich Low_complexity Low_complexity 1 28 0 8 1354 228 100 0 0 chr11 100845806 100845846 -20998010 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 8 1354 878 174 0 7 chr11 100845857 100846007 -20997849 - B1_Mur4 SINE Alu 0 150 2 8 1354 459 0 0 0 chr11 100846019 100846070 -20997786 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1354 216 122 0 0 chr11 100846070 100846111 -20997745 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1354 1247 34 0 0 chr11 100846228 100846374 -20997482 + B1_Mus2 SINE Alu 2 147 0 8 1354 1541 42 0 55 chr11 100846389 100846591 -20997265 + B2_Mm2 SINE B2 2 192 -3 8 1354 427 161 33 54 chr11 100846597 100846689 -20997167 - B1_Mus1 SINE Alu -58 90 1 8 1354 957 83 0 0 chr11 100846732 100846864 -20996992 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 8 1354 1108 103 0 0 chr11 100846880 100847026 -20996830 + B1_Mus1 SINE Alu 2 147 -1 8 1354 495 242 47 141 chr11 100847030 100847222 -20996634 - B3A SINE B2 -15 183 8 8 1354 665 227 122 6 chr11 100847355 100847519 -20996337 + B3A SINE B2 1 183 -15 8 1354 643 207 0 0 chr11 100847613 100847729 -20996127 - B3 SINE B2 -11 205 90 8 1354 1796 73 45 156 chr11 100847734 100848024 -20995832 + ORR1A2 LTR MaLR 1 286 -41 8 1354 1103 70 28 0 chr11 100848024 100848167 -20995689 + B1_Mus1 SINE Alu 2 148 0 8 1354 1796 73 45 156 chr11 100848167 100848234 -20995622 + ORR1A2 LTR MaLR 287 318 -9 8 1354 540 0 0 0 chr11 100848302 100848362 -20995494 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 8 1354 1309 92 17 0 chr11 100848362 100848536 -20995320 - B2_Mm2 SINE B2 -16 179 3 8 1354 225 269 26 136 chr11 100848580 100848696 -20995160 - L1M5 LINE L1 -3006 3140 3041 8 1354 1632 42 5 0 chr11 100848696 100848888 -20994968 - B2_Mm1a SINE B2 0 193 1 8 1354 225 269 26 136 chr11 100848888 100848926 -20994930 - L1M5 LINE L1 -3106 3040 3003 8 1354 1190 48 0 7 chr11 100848928 100849074 -20994782 + B1_Mus2 SINE Alu 2 146 -1 8 1354 245 266 87 0 chr11 100849107 100849202 -20994654 - B1F SINE Alu -45 104 2 8 1354 3689 95 97 53 chr11 100849202 100849873 -20993983 + RLTR19B LTR ERVK 15 715 0 8 1354 466 289 76 54 chr11 100849995 100850310 -20993546 - L1MC4 LINE L1 -108 7934 7613 8 1354 500 214 4 26 chr11 100850316 100850469 -20993387 - B3A SINE B2 -3 213 1 8 1354 945 123 0 19 chr11 100850499 100850657 -20993199 + RLTR14 LTR ERV1 1 155 -227 8 1354 762 177 29 53 chr11 100850657 100850866 -20992990 - RMER10B LTR ERVL 0 398 195 8 1354 335 121 17 0 chr11 100850866 100850924 -20992932 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 8 1354 1325 122 34 34 chr11 100850924 100851188 -20992668 - RMER10B LTR ERVL -134 264 1 8 1354 1410 144 22 19 chr11 100851188 100851418 -20992438 + RLTR14 LTR ERV1 152 382 0 8 1354 228 258 0 31 chr11 100851445 100851480 -20992376 + (TTG)n Simple_repeat Simple_repeat 1 34 0 8 1354 1145 54 0 13 chr11 100851480 100851629 -20992227 + B1_Mus2 SINE Alu 1 147 0 8 1354 228 258 0 31 chr11 100851629 100851657 -20992199 + (TTG)n Simple_repeat Simple_repeat 3 30 0 8 1354 202 35 69 0 chr11 100851704 100851733 -20992123 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 8 1354 618 99 0 0 chr11 100851733 100851824 -20992032 + (TC)n Simple_repeat Simple_repeat 1 91 0 8 1354 932 80 0 21 chr11 100851833 100851973 -20991883 + (TTTCC)n Simple_repeat Simple_repeat 3 139 0 8 1354 666 200 69 0 chr11 100851973 100852103 -20991753 - B1_Mur4 SINE Alu -10 140 2 9 1354 276 337 11 33 chr11 100852103 100852195 -20991661 - RSINE1 SINE B4 -73 92 3 9 1354 180 111 0 0 chr11 100852803 100852830 -20991026 + (TATG)n Simple_repeat Simple_repeat 2 28 0 9 1354 431 189 10 59 chr11 100852974 100853075 -20990781 - PB1D7 SINE Alu -3 117 22 9 1354 328 274 35 62 chr11 100853411 100853524 -20990332 + RSINE1 SINE B4 54 163 -2 9 1354 773 164 23 0 chr11 100853804 100853932 -20989924 - B1_Mur4 SINE Alu -19 131 1 9 1354 320 221 19 65 chr11 100853932 100854091 -20989765 - L1MEf LINE L1 -4084 2549 2399 9 1354 1204 61 0 0 chr11 100854091 100854238 -20989618 + B1_Mus2 SINE Alu 1 147 0 9 1354 601 236 47 8 chr11 100854292 100854420 -20989436 - RSINE1 SINE B4 -29 136 4 9 1354 647 220 38 0 chr11 100854449 100854581 -20989275 - B1_Mur1 SINE Alu -7 142 6 9 1354 257 315 8 67 chr11 100854482 100854594 -20989262 - MT2B LTR ERVL -338 263 158 9 1354 890 231 33 14 chr11 100854594 100854805 -20989051 - B3 SINE B2 0 216 2 9 1354 510 217 69 14 chr11 100854844 100854989 -20988867 - B4 SINE B4 -5 287 135 9 1354 522 0 0 0 chr11 100855227 100855285 -20988571 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 9 1354 783 173 38 0 chr11 100855285 100855418 -20988438 - B1_Mur2 SINE Alu -11 138 1 9 1354 617 186 32 0 chr11 100855520 100855644 -20988212 + B3 SINE B2 3 130 -86 9 1354 249 311 61 71 chr11 100855674 100855871 -20987985 - L1MEf LINE L1 -4500 2133 1939 9 1354 261 139 0 0 chr11 100855873 100855916 -20987940 + (TCTCC)n Simple_repeat Simple_repeat 5 47 0 9 1354 821 10 10 0 chr11 100855960 100856058 -20987798 + (GA)n Simple_repeat Simple_repeat 2 100 0 9 1354 269 169 15 44 chr11 100856087 100856155 -20987701 - L1MEf LINE L1 -4902 1731 1666 9 1354 189 176 29 29 chr11 100856179 100856249 -20987607 + CT-rich Low_complexity Low_complexity 4 73 0 9 1354 406 208 45 13 chr11 100856272 100856371 -20987485 - B1F SINE Alu -11 138 16 9 1354 341 264 16 16 chr11 100856410 100856537 -20987319 - MTEa LTR MaLR -3 376 250 9 1354 794 279 27 9 chr11 100856549 100856773 -20987083 - MTEa LTR MaLR -102 277 50 9 1354 887 34 8 0 chr11 100856773 100856890 -20986966 + B1_Mm SINE Alu 30 147 0 9 1354 375 239 10 71 chr11 100857037 100857136 -20986720 - B4A SINE B4 -199 93 1 9 1354 400 252 0 10 chr11 100857293 100857397 -20986459 - RSINE1 SINE B4 -41 124 22 9 1354 270 73 0 0 chr11 100857426 100857467 -20986389 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 9 1354 505 282 0 0 chr11 100857474 100857591 -20986265 - B1F SINE Alu -12 137 21 9 1354 793 156 55 28 chr11 100857616 100857761 -20986095 + B1_Mur4 SINE Alu 1 149 -1 9 1354 416 346 49 23 chr11 100857852 100858115 -20985741 - L1MEf LINE L1 -5347 1286 1017 9 1354 513 182 0 0 chr11 100858137 100858236 -20985620 + (TG)n Simple_repeat Simple_repeat 2 100 0 9 1354 366 42 0 0 chr11 100858245 100858293 -20985563 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 9 1354 1114 73 0 0 chr11 100858293 100858429 -20985427 - B1_Mus1 SINE Alu -12 136 1 9 1354 1044 195 72 4 chr11 100858621 100858858 -20984998 + MTD LTR MaLR 1 253 -166 9 1354 859 168 0 27 chr11 100859135 100859282 -20984574 + B1_Mur3 SINE Alu 1 143 -6 9 1354 1295 89 41 0 chr11 100859293 100859462 -20984394 + B2_Mm2 SINE B2 4 179 -16 9 1354 324 0 0 0 chr11 100859462 100859498 -20984358 + (GA)n Simple_repeat Simple_repeat 1 36 0 9 1354 252 0 0 0 chr11 100859564 100859592 -20984264 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1354 234 307 13 13 chr11 100859817 100859893 -20983963 - ID2 SINE ID -2 81 6 9 1354 747 144 49 21 chr11 100860158 100860300 -20983556 - B1_Mur4 SINE Alu 0 150 5 9 1354 765 272 11 5 chr11 100860334 100860519 -20983337 + B3 SINE B2 1 186 -30 9 1354 414 0 0 0 chr11 100860519 100860565 -20983291 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1354 436 276 59 59 chr11 100860599 100860758 -20983098 + ID_B1 SINE B4 12 177 -47 9 1354 1713 154 149 134 chr11 100860758 100861220 -20982636 - RLTR28 LTR ERVL 0 524 87 9 1354 760 92 6 135 chr11 100861220 100861383 -20982473 + B1_Mur4 SINE Alu 1 142 -8 9 1354 1713 154 149 134 chr11 100861383 100861436 -20982420 - RLTR28 LTR ERVL -438 86 3 9 1354 436 276 59 59 chr11 100861436 100861480 -20982376 + ID_B1 SINE B4 178 215 -9 9 1354 931 239 34 16 chr11 100861489 100861770 -20982086 + ID_B1 SINE B4 2 287 -5 9 1354 396 246 88 34 chr11 100861826 100861973 -20981883 + L1MC4 LINE L1 6784 6938 -1104 9 1354 1888 136 81 33 chr11 100862174 100862569 -20981287 + RMER10A LTR ERVL 1 414 -28 9 1354 236 310 32 75 chr11 100862565 100862844 -20981012 - RMER17C LTR ERVK -35 375 109 9 1354 209 194 0 0 chr11 100863026 100863062 -20980794 + T-rich Low_complexity Low_complexity 4 39 0 9 1354 292 253 45 11 chr11 100863064 100863152 -20980704 + B3A SINE B2 88 178 -20 9 1354 423 0 0 0 chr11 100863161 100863208 -20980648 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1354 231 301 41 0 chr11 100863208 100863281 -20980575 - ID_B1 SINE B4 -9 215 140 9 1354 357 23 0 0 chr11 100863481 100863504 -20980352 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1354 1191 55 7 0 chr11 100863504 100863650 -20980206 - B1_Mus2 SINE Alu 0 147 1 9 1354 357 23 0 0 chr11 100863650 100863670 -20980186 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1354 224 211 0 0 chr11 100863711 100863749 -20980107 - B1_Mur4 SINE Alu -106 44 7 9 1354 771 69 0 0 chr11 100863765 100863867 -20979989 + (TC)n Simple_repeat Simple_repeat 1 102 0 9 1354 355 229 90 18 chr11 100863868 100863979 -20979877 - ID_B1 SINE B4 -2 222 104 9 1354 1941 44 23 35 chr11 100863985 100864245 -20979611 + L1Md_F2 LINE L1 6326 6582 0 9 1354 501 97 0 0 chr11 100864719 100864791 -20979065 + (A)n Simple_repeat Simple_repeat 1 72 0 9 1354 1156 68 0 7 chr11 100865046 100865194 -20978662 - B1_Mm SINE Alu 0 147 1 9 1354 23 33 0 0 chr11 100865197 100865227 -20978629 + AT_rich Low_complexity Low_complexity 1 30 0 9 1354 1471 78 5 0 chr11 100865243 100865435 -20978421 - B2_Mm1a SINE B2 0 193 1 9 1354 194 260 0 14 chr11 100865536 100865610 -20978246 + (TG)n Simple_repeat Simple_repeat 2 74 0 9 1354 3182 53 0 10 chr11 100865667 100866064 -20977792 - MTA_Mm LTR MaLR -3 393 1 9 1354 536 287 132 27 chr11 100866069 100866146 -20977710 - B4 SINE B4 -6 286 182 9 1354 804 208 0 7 chr11 100866146 100866291 -20977565 - B1_Mur2 SINE Alu -1 148 5 9 1354 536 287 132 27 chr11 100866291 100866471 -20977385 - B4 SINE B4 -111 181 2 9 1354 819 31 0 0 chr11 100866484 100866582 -20977274 + (TTTCC)n Simple_repeat Simple_repeat 4 101 0 9 1354 747 0 0 0 chr11 100866582 100866665 -20977191 + (TTCCC)n Simple_repeat Simple_repeat 4 86 0 9 1354 1256 84 6 0 chr11 100866665 100866844 -20977012 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 9 1354 397 294 127 43 chr11 100866989 100867288 -20976568 + MLT1C LTR MaLR 5 328 -139 9 1354 582 254 7 0 chr11 100867327 100867465 -20976391 + ID_B1 SINE B4 81 219 -5 9 1354 441 245 31 0 chr11 100867757 100867855 -20976001 - PB1D10 SINE Alu -7 110 10 9 1354 436 228 21 11 chr11 100867775 100867868 -20975988 - ID_B1 SINE B4 -54 170 77 9 1354 414 0 0 0 chr11 100867876 100867922 -20975934 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 9 1354 245 104 21 0 chr11 100868192 100868235 -20975621 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 9 1354 1211 61 0 0 chr11 100868235 100868382 -20975474 - B1_Mm SINE Alu 0 147 1 9 1354 322 283 23 98 chr11 100868387 100868520 -20975336 - PB1 SINE Alu -3 124 2 9 1354 235 314 0 11 chr11 100868679 100868766 -20975090 + MIR SINE MIR 156 241 -21 9 1354 238 246 16 98 chr11 100868806 100868906 -20974950 - PB1D7 SINE Alu -23 104 5 9 1354 648 0 0 0 chr11 100869229 100869301 -20974555 + (GAA)n Simple_repeat Simple_repeat 1 72 0 9 1354 371 282 45 9 chr11 100869306 100869417 -20974439 + RSINE1 SINE B4 15 129 -36 9 1354 279 0 0 0 chr11 100869422 100869453 -20974403 + (TTA)n Simple_repeat Simple_repeat 2 32 0 9 1354 212 154 0 0 chr11 100870835 100870874 -20972982 + (CGG)n Simple_repeat Simple_repeat 3 41 0 9 1354 249 304 7 88 chr11 100872438 100872457 -20971399 + B4A SINE B4 70 77 -215 9 1354 568 183 67 65 chr11 100872457 100872652 -20971204 + B1_Mur4 SINE Alu 3 150 0 9 1354 452 198 10 10 chr11 100872665 100872762 -20971094 + ID_B1 SINE B4 128 224 0 9 1354 198 71 0 0 chr11 100873365 100873393 -20970463 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1354 375 194 151 0 chr11 100873509 100873602 -20970254 + PB1D7 SINE Alu 1 107 -13 9 1354 461 284 48 34 chr11 100873635 100873781 -20970075 + ID_B1 SINE B4 77 224 0 9 1354 284 198 116 0 chr11 100874572 100874670 -20969186 + B1_Mur1 SINE Alu 1 124 -25 9 1354 523 270 57 130 chr11 100874693 100875008 -20968848 + B4 SINE B4 1 292 0 9 1354 186 167 0 0 chr11 100875375 100875411 -20968445 + CT-rich Low_complexity Low_complexity 2 37 0 9 1354 490 207 72 34 chr11 100875427 100875557 -20968299 - B1F SINE Alu -5 144 7 9 1354 208 233 0 0 chr11 100875574 100875617 -20968239 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1354 260 342 0 0 chr11 100875620 100875693 -20968163 - B4A SINE B4 -4 288 216 9 1354 1443 89 5 0 chr11 100875705 100875896 -20967960 - B2_Mm1a SINE B2 -1 192 1 9 1354 221 30 61 0 chr11 100875897 100875930 -20967926 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 9 1354 858 134 30 0 chr11 100875942 100876076 -20967780 - B1_Mur4 SINE Alu -1 149 12 9 1354 263 308 11 0 chr11 100876134 100876225 -20967631 - B4 SINE B4 -199 93 2 9 1354 238 294 128 14 chr11 100876225 100876373 -20967483 - L1MC4 LINE L1 -644 7398 7234 9 1354 902 123 65 0 chr11 100876437 100876575 -20967281 - B1_Mur2 SINE Alu -1 148 2 9 1354 37 0 0 0 chr11 100876579 100876616 -20967240 + AT_rich Low_complexity Low_complexity 1 37 0 9 1354 803 169 0 21 chr11 100876616 100876761 -20967095 - B1_Mur3 SINE Alu 0 149 8 1 1354 38 0 0 20 chr11 100876765 100876799 -20967057 + AT_rich Low_complexity Low_complexity 1 34 0 1 1354 1129 74 0 0 chr11 100876799 100876947 -20966909 - B1_Mus1 SINE Alu 0 148 1 1 1354 38 0 0 20 chr11 100876947 100876961 -20966895 + AT_rich Low_complexity Low_complexity 1 14 0 1 1354 292 214 86 100 chr11 100876961 100877101 -20966755 - B3A SINE B2 -1 197 60 1 1354 315 228 21 32 chr11 100877191 100877286 -20966570 - B3A SINE B2 -84 114 21 1 1354 215 339 31 0 chr11 100877397 100877462 -20966394 + PB1D10 SINE Alu 29 95 -22 1 1354 427 191 0 35 chr11 100877642 100877729 -20966127 + B3A SINE B2 2 85 -113 1 1354 223 186 0 0 chr11 100877776 100877819 -20966037 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1354 265 239 60 0 chr11 100877822 100877889 -20965967 - ID4 SINE ID -9 74 4 1 1354 189 0 0 0 chr11 100877939 100877960 -20965896 + (TGG)n Simple_repeat Simple_repeat 3 23 0 1 1354 525 80 0 0 chr11 100877960 100878035 -20965821 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1354 356 333 7 83 chr11 100878036 100878180 -20965676 - RSINE1 SINE B4 -32 133 1 1 1354 417 257 209 0 chr11 100878203 100878351 -20965505 + B3A SINE B2 2 180 -18 1 1354 497 279 0 203 chr11 100878360 100878567 -20965289 + RSINE1 SINE B4 1 165 0 1 1354 1304 179 5 0 chr11 100878814 100879026 -20964830 + B3 SINE B2 1 213 -3 1 1354 335 235 335 25 chr11 100879087 100879317 -20964539 - L1M2 LINE L1 -489 5802 5487 1 1354 428 231 100 0 chr11 100879317 100879447 -20964409 - B1F2 SINE Alu -6 143 1 1 1354 282 272 75 28 chr11 100879447 100879480 -20964376 - L1M2 LINE L1 -805 5486 5447 1 1354 205 262 0 0 chr11 100880338 100880380 -20963476 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1354 215 222 139 58 chr11 100880583 100880669 -20963187 - B1F SINE Alu -24 125 33 1 1354 207 0 0 0 chr11 100880712 100880735 -20963121 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1354 767 162 20 27 chr11 100880744 100880890 -20962966 - B1_Mus1 SINE Alu -1 147 3 1 1354 340 243 117 0 chr11 100881064 100881167 -20962689 + PB1D9 SINE Alu 6 120 0 1 1354 251 289 40 40 chr11 100881218 100881319 -20962537 - MIRb SINE MIR -159 109 9 1 1354 308 136 0 33 chr11 100882297 100882358 -20961498 + CT-rich Low_complexity Low_complexity 3 61 0 1 1354 410 268 78 54 chr11 100883429 100883595 -20960261 + MER5A DNA MER1_type 19 188 -1 1 1354 474 198 133 16 chr11 100884375 100884489 -20959367 + ID_B1 SINE B4 82 212 -12 1 1354 210 71 0 0 chr11 100884489 100884517 -20959339 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 1354 474 198 133 16 chr11 100884517 100884530 -20959326 + ID_B1 SINE B4 213 224 0 1 1354 802 156 194 38 chr11 100885845 100886031 -20957825 + B3 SINE B2 2 216 0 1 1354 184 167 42 0 chr11 100886033 100886081 -20957775 + GA-rich Low_complexity Low_complexity 1 50 0 1 1354 246 62 0 0 chr11 100887556 100887588 -20956268 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1354 256 300 0 37 chr11 100887746 100887881 -20955975 + T-rich Low_complexity Low_complexity 2 131 0 1 1354 351 200 56 65 chr11 100888148 100888255 -20955601 + B1F SINE Alu 18 123 -26 1 1354 288 0 0 0 chr11 100888295 100888327 -20955529 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1354 276 284 50 119 chr11 100890289 100890317 -20953539 - YREP_Mm Unknown Unknown -1495 317 230 1 1354 568 167 52 9 chr11 100890317 100890432 -20953424 + B1F SINE Alu 21 140 -9 1 1354 276 284 50 119 chr11 100890432 100890449 -20953407 - YREP_Mm Unknown Unknown -1495 229 169 1 1354 447 321 62 21 chr11 100890749 100890943 -20952913 + B4A SINE B4 16 217 -75 1 1354 402 21 0 0 chr11 100891012 100891059 -20952797 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1354 30 0 0 0 chr11 100891240 100891270 -20952586 + AT_rich Low_complexity Low_complexity 1 30 0 1 1354 941 205 50 5 chr11 100891293 100891494 -20952362 - B3 SINE B2 -6 210 1 1 1354 432 55 0 0 chr11 100892887 100892942 -20950914 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1354 1307 102 0 10 chr11 100892976 100893173 -20950683 + B2_Mm2 SINE B2 1 195 0 1 1354 933 138 7 0 chr11 100893320 100893465 -20950391 - B1_Mus1 SINE Alu -1 147 2 1 1354 1313 94 5 0 chr11 100893697 100893888 -20949968 - B2_Mm1t SINE B2 0 193 2 1 1354 397 254 110 48 chr11 100894083 100894228 -20949628 - RSINE1 SINE B4 -10 155 2 1 1354 513 222 64 93 chr11 100894428 100894602 -20949254 - B3A SINE B2 0 198 32 1 1354 237 33 0 0 chr11 100894602 100894632 -20949224 + (CAG)n Simple_repeat Simple_repeat 2 31 0 1 1354 513 222 64 93 chr11 100894632 100894661 -20949195 - B3A SINE B2 -167 31 2 1 1354 295 313 0 12 chr11 100894857 100894941 -20948915 - ID4_ SINE ID 0 83 1 1 1354 259 313 0 0 chr11 100894960 100895027 -20948829 + ID4_ SINE ID 15 81 -2 1 1354 183 205 0 0 chr11 100895730 100895769 -20948087 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 1 1354 1213 174 0 5 chr11 100895780 100895993 -20947863 - URR1A DNA MER1_type -4 222 11 1 1354 329 276 0 0 chr11 100896069 100896145 -20947711 + ID4 SINE ID 8 83 0 1 1354 593 209 9 0 chr11 100896297 100896412 -20947444 - B1_Mus2 SINE Alu 0 147 32 1 1354 771 249 54 5 chr11 100896414 100896600 -20947256 + ID_B1 SINE B4 29 223 -1 1 1354 255 377 7 21 chr11 100896481 100896622 -20947234 - YREP_Mm Unknown Unknown -1519 293 155 1 1354 438 20 0 0 chr11 100897002 100897053 -20946803 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 1354 315 0 0 0 chr11 100897054 100897089 -20946767 + (CATA)n Simple_repeat Simple_repeat 1 35 0 1 1354 248 245 0 0 chr11 100897502 100897555 -20946301 - PB1 SINE Alu -39 88 36 1 1354 24 0 0 0 chr11 100897624 100897648 -20946208 + AT_rich Low_complexity Low_complexity 1 24 0 1 1354 244 217 176 24 chr11 100897709 100897794 -20946062 - B1F SINE Alu -51 98 1 1 1354 273 57 0 0 chr11 100897901 100897936 -20945920 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1354 398 339 188 0 chr11 100898213 100898316 -20945540 - RMER30 DNA MER1_type -1 201 99 1 1354 231 36 0 0 chr11 100898316 100898344 -20945512 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1354 398 339 188 0 chr11 100898344 100898405 -20945451 - RMER30 DNA MER1_type -104 98 7 1 1354 633 194 8 23 chr11 100898447 100898579 -20945277 - B1_Mur1 SINE Alu -2 147 18 1 1354 908 136 7 0 chr11 100898788 100898928 -20944928 + B1_Mur3 SINE Alu 3 143 -6 1 1354 1234 80 26 31 chr11 100900446 100900639 -20943217 - B2_Mm2 SINE B2 -2 193 2 1 1354 297 0 0 0 chr11 100900691 100900724 -20943132 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1354 207 0 0 0 chr11 100900724 100900746 -20943110 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1354 532 279 155 32 chr11 100900767 100901019 -20942837 - B4A SINE B4 -9 283 1 1 1354 342 0 0 0 chr11 100901361 100901399 -20942457 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1354 252 239 60 0 chr11 100901414 100901481 -20942375 - B1F SINE Alu -36 113 43 1 1354 292 281 40 50 chr11 100901534 100901635 -20942221 + PB1D7 SINE Alu 18 117 -3 1 1354 823 308 32 14 chr11 100901734 100902014 -20941842 + B4A SINE B4 8 292 0 1 1354 654 221 39 39 chr11 100902059 100902238 -20941618 + RCHARR1 DNA MER1_type 305 483 -491 1 1354 252 300 0 12 chr11 100902238 100902319 -20941537 - ID4_ SINE ID 0 83 4 1 1354 919 203 54 37 chr11 100902322 100902563 -20941293 + RCHARR1 DNA MER1_type 496 740 -234 1 1354 649 235 53 0 chr11 100902571 100902703 -20941153 - ID_B1 SINE B4 -5 219 81 1 1354 434 180 132 8 chr11 100902701 100902830 -20941026 + RCHARR1 DNA MER1_type 725 869 -105 1 1354 1011 108 0 7 chr11 100902953 100903102 -20940754 + B1_Mus1 SINE Alu 1 148 0 1 1354 389 266 78 17 chr11 100903165 100903280 -20940576 - B3 SINE B2 0 216 95 1 1354 229 257 24 108 chr11 100903329 100903412 -20940444 + B4A SINE B4 66 141 -151 1 1354 242 296 0 129 chr11 100903419 100903512 -20940344 + ID4 SINE ID 1 81 -2 1 1354 950 112 111 6 chr11 100903583 100903754 -20940102 + B2_Mm2 SINE B2 1 189 -6 1 1354 263 308 34 119 chr11 100903770 100903924 -20939932 + L1MC5 LINE L1 7685 7812 -149 1 1354 869 134 49 0 chr11 100903924 100904066 -20939790 + B1_Mur3 SINE Alu 1 149 0 1 1354 263 308 34 119 chr11 100904066 100904180 -20939676 + L1MC5 LINE L1 7813 7930 -31 1 1354 906 179 25 50 chr11 100904621 100904821 -20939035 - B3A SINE B2 -3 195 1 1 1354 379 208 21 0 chr11 100905536 100905637 -20938219 + B1F SINE Alu 5 143 -6 1 1354 257 295 8 43 chr11 100906630 100906747 -20937109 + CT-rich Low_complexity Low_complexity 3 115 0 1 1354 324 0 0 0 chr11 100908360 100908396 -20935460 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1354 821 110 102 0 chr11 100908644 100908771 -20935085 + B1_Mus2 SINE Alu 2 141 -6 1 1354 198 0 0 0 chr11 100910459 100910481 -20933375 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 1 1354 198 303 61 61 chr11 100912475 100912640 -20931216 - L2c LINE L2 -151 3236 3072 1 1354 621 250 8 0 chr11 100913348 100913480 -20930376 - ID_B1 SINE B4 -12 212 80 1 1354 368 259 0 74 chr11 100914187 100914308 -20929548 - PB1D10 SINE Alu 0 117 6 1 1354 1208 265 59 11 chr11 100914590 100914945 -20928911 + MTE2b LTR MaLR 8 379 0 1 1354 750 188 0 51 chr11 100915022 100915179 -20928677 + B1_Mur4 SINE Alu 2 150 0 1 1354 303 188 186 12 chr11 100915236 100915322 -20928534 + B1_Mus2 SINE Alu 47 147 0 1 1354 941 219 21 0 chr11 100915359 100915546 -20928310 + B3 SINE B2 1 191 -25 1 1354 771 182 14 0 chr11 100915583 100915726 -20928130 + B1_Mur1 SINE Alu 5 149 0 1 1354 424 103 29 0 chr11 100915752 100915820 -20928036 + B3 SINE B2 37 106 -110 1 1354 582 106 327 0 chr11 100915844 100915957 -20927899 + B1_Mur4 SINE Alu 1 150 0 1 1354 313 316 9 9 chr11 100915974 100916089 -20927767 + PB1D10 SINE Alu 3 117 0 1 1354 207 0 0 0 chr11 100917194 100917217 -20926639 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1354 456 283 9 0 chr11 100917220 100917326 -20926530 - PB1D10 SINE Alu -10 107 1 1 1354 698 239 32 0 chr11 100917641 100917796 -20926060 + RSINE1 SINE B4 6 165 0 1 1354 267 174 56 28 chr11 100917824 100917895 -20925961 + MER53 DNA hAT 27 99 -94 1 1354 234 373 39 23 chr11 100918940 100919069 -20924787 + MIRb SINE MIR 110 240 -28 1 1354 180 0 0 0 chr11 100920139 100920159 -20923697 + (CCCCG)n Simple_repeat Simple_repeat 5 24 0 1 1354 519 69 0 0 chr11 100920490 100920562 -20923294 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1354 998 62 13 34 chr11 100921078 100921227 -20922629 + B1_Mus1 SINE Alu 1 146 -2 1 1354 1405 69 16 0 chr11 100922192 100922381 -20921475 - B2_Mm2 SINE B2 -3 192 1 1 1354 24 32 0 0 chr11 100922383 100922414 -20921442 + AT_rich Low_complexity Low_complexity 1 31 0 1 1354 310 305 12 0 chr11 100922416 100922498 -20921358 + B4 SINE B4 1 83 -209 1 1354 2311 151 42 5 chr11 100922503 100922908 -20920948 - MTC LTR MaLR -1 420 1 1 1354 263 238 36 36 chr11 100922918 100923001 -20920855 + RSINE1 SINE B4 82 164 -1 1 1354 284 274 24 0 chr11 100923130 100923214 -20920642 + 7SLRNA srpRNA srpRNA 1 86 -228 1 1354 517 151 7 23 chr11 100923184 100923298 -20920558 - B3 SINE B2 -83 115 1 1 1354 682 190 108 0 chr11 100923299 100923457 -20920399 - B3A SINE B2 -13 185 11 1 1354 297 186 227 0 chr11 100923478 100923575 -20920281 - PB1D9 SINE Alu 0 120 2 1 1355 261 0 0 0 chr11 100925582 100925611 -20918245 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1355 343 306 54 9 chr11 100925920 100926032 -20917824 + PB1D10 SINE Alu 1 117 0 1 1355 240 297 33 11 chr11 100926046 100926138 -20917718 + L1M4 LINE L1 4901 4994 -1152 1 1355 398 276 235 25 chr11 100926238 100926442 -20917414 + L1M4 LINE L1 4932 5178 -968 1 1355 425 233 23 62 chr11 100926750 100926878 -20916978 + ID_B1 SINE B4 99 221 -3 1 1355 432 224 41 41 chr11 100926893 100927014 -20916842 + RSINE1 SINE B4 8 128 -37 1 1355 769 100 0 55 chr11 100927139 100927266 -20916590 + B1_Mur3 SINE Alu 17 136 -13 1 1355 534 31 0 0 chr11 100927302 100927366 -20916490 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1355 385 219 105 8 chr11 100927662 100927786 -20916070 - ORR1D1 LTR MaLR -1 369 234 1 1355 929 123 60 24 chr11 100927891 100928057 -20915799 - URR1B DNA MER1_type -47 178 7 1 1355 431 189 0 32 chr11 100928073 100928166 -20915690 - ORR1D1 LTR MaLR -284 90 1 1 1355 352 255 93 0 chr11 100928834 100928959 -20914897 + B1F2 SINE Alu 12 149 0 1 1355 186 167 0 0 chr11 100928961 100928997 -20914859 + A-rich Low_complexity Low_complexity 1 36 0 1 1355 687 166 65 0 chr11 100929056 100929195 -20914661 - B1_Mus1 SINE Alu 0 148 1 1 1355 439 216 190 0 chr11 100929196 100929312 -20914544 + B1_Mur2 SINE Alu 12 149 0 1 1355 801 232 52 36 chr11 100929336 100929528 -20914328 + B3 SINE B2 7 201 -15 1 1355 547 280 0 45 chr11 100929572 100929729 -20914127 - RSINE1 SINE B4 -14 151 2 1 1355 388 300 0 10 chr11 100929862 100929963 -20913893 + PB1D7 SINE Alu 21 120 0 1 1355 693 251 64 55 chr11 100930016 100930375 -20913481 + RMER19C LTR ERVK 1 309 -302 1 1355 198 0 0 0 chr11 100930387 100930409 -20913447 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1355 1073 227 116 10 chr11 100930431 100930734 -20913122 + RMER5 LTR ERV1 200 534 0 1 1355 278 293 103 18 chr11 100930814 100930946 -20912910 - B4 SINE B4 -150 142 3 1 1355 201 229 96 41 chr11 100931956 100932029 -20911827 + MIRb SINE MIR 52 128 -140 1 1355 268 235 43 29 chr11 100932636 100932706 -20911150 + B1F2 SINE Alu 10 80 -69 1 1355 1338 184 51 18 chr11 100932698 100932974 -20910882 - MTD LTR MaLR -116 303 19 1 1355 207 0 0 0 chr11 100932974 100932997 -20910859 + (G)n Simple_repeat Simple_repeat 1 23 0 1 1355 185 194 116 29 chr11 100933070 100933139 -20910717 + L2b LINE L2 3241 3315 -60 1 1355 359 316 0 0 chr11 100933783 100933881 -20909975 + PB1D10 SINE Alu 2 99 -18 1 1355 585 210 176 6 chr11 100933900 100934082 -20909774 + B3 SINE B2 4 216 0 1 1355 1248 162 0 9 chr11 100934160 100934372 -20909484 - B3 SINE B2 -6 210 1 1 1355 21 0 0 0 chr11 100935635 100935656 -20908200 + AT_rich Low_complexity Low_complexity 1 21 0 1 1355 257 232 21 95 chr11 100935677 100935772 -20908084 + MT2B LTR ERVL 154 241 -360 1 1355 477 209 114 0 chr11 100935688 100935793 -20908063 + ID_B1 SINE B4 81 197 -27 1 1355 332 279 41 83 chr11 100935820 100935941 -20907915 + RSINE1 SINE B4 50 165 0 1 1355 195 100 0 0 chr11 100935945 100935975 -20907881 + (CACCAT)n Simple_repeat Simple_repeat 3 32 0 1 1355 695 224 0 45 chr11 100935992 100936146 -20907710 + B1_Mur3 SINE Alu 1 147 -2 1 1355 952 90 0 0 chr11 100936183 100936316 -20907540 - B1_Mus1 SINE Alu -1 147 15 1 1355 1234 118 69 0 chr11 100936314 100936518 -20907338 - URR1A DNA MER1_type -8 218 1 1 1355 552 303 0 32 chr11 100936570 100936727 -20907129 - RSINE1 SINE B4 -2 163 12 1 1355 1523 37 5 0 chr11 100936757 100936947 -20906909 - B2_Mm1t SINE B2 -1 192 2 1 1355 1360 79 11 0 chr11 100937040 100937230 -20906626 - B2_Mm1t SINE B2 0 193 2 1 1355 364 262 98 45 chr11 100939145 100939277 -20904579 + ID_B1 SINE B4 86 224 0 1 1355 270 57 0 0 chr11 100939390 100939425 -20904431 + U2 snRNA snRNA 1 35 -153 1 1355 227 409 29 0 chr11 100941575 100941601 -20902255 - B4A SINE B4 -60 232 92 1 1355 523 216 27 0 chr11 100941601 100941712 -20902144 - PB1D9 SINE Alu 0 120 7 1 1355 242 275 58 105 chr11 100941797 100941988 -20901868 - B2_Mm2 SINE B2 0 195 14 1 1355 256 269 61 51 chr11 100942045 100942143 -20901713 - ID_B1 SINE B4 -36 188 90 1 1355 339 324 73 23 chr11 100942156 100942179 -20901677 - B4A SINE B4 0 292 271 1 1355 273 57 0 0 chr11 100942179 100942214 -20901642 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1355 339 296 103 34 chr11 100942214 100942415 -20901441 - B4A SINE B4 -22 270 49 1 1355 760 135 68 0 chr11 100942530 100942663 -20901193 - B1_Mus1 SINE Alu -1 147 6 1 1355 294 29 0 0 chr11 100943858 100943893 -20899963 + (CCCCG)n Simple_repeat Simple_repeat 5 39 0 1 1355 184 253 12 62 chr11 100946008 100946036 -20897820 - L3 LINE CR1 -4320 169 142 1 1355 189 0 0 0 chr11 100946036 100946057 -20897799 + (TCC)n Simple_repeat Simple_repeat 1 21 0 1 1355 184 253 12 62 chr11 100946057 100946108 -20897748 - L3 LINE CR1 -4348 141 94 1 1355 990 193 20 30 chr11 100951754 100951957 -20891899 - B3 SINE B2 -7 209 9 1 1355 247 245 198 45 chr11 100951992 100952103 -20891753 - RSINE1 SINE B4 -35 130 3 1 1355 1167 81 0 7 chr11 100952181 100952330 -20891526 - B1_Mus1 SINE Alu 0 148 1 1 1355 22 70 0 0 chr11 100953462 100953505 -20890351 + AT_rich Low_complexity Low_complexity 1 43 0 1 1355 299 130 0 18 chr11 100954677 100954732 -20889124 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 1 1355 1163 43 0 41 chr11 100954736 100954882 -20888974 - B1_Mm SINE Alu -7 140 1 1 1355 235 329 54 60 chr11 100955231 100955380 -20888476 + B1F1 SINE Alu 2 149 0 1 1355 23 0 0 0 chr11 100955533 100955556 -20888300 + AT_rich Low_complexity Low_complexity 1 23 0 1 1355 758 43 250 25 chr11 100956058 100956178 -20887678 - B1_Mus1 SINE Alu 0 148 2 1 1355 1218 41 7 0 chr11 100957445 100957590 -20886266 + B1_Mus2 SINE Alu 1 146 -1 1 1355 503 246 73 48 chr11 100962017 100962141 -20881715 - RSINE1 SINE B4 -36 129 3 1 1355 485 280 31 80 chr11 100962684 100962710 -20881146 + ID_B1 SINE B4 70 222 0 1 1355 789 152 44 22 chr11 100962710 100962845 -20881011 + B1_Mur4 SINE Alu 13 150 0 1 1355 245 311 16 0 chr11 100962856 100962917 -20880939 + ID4 SINE ID 2 63 -20 1 1355 546 170 293 0 chr11 100963066 100963240 -20880616 + URR1A DNA MER1_type 1 225 -1 1 1355 279 256 160 0 chr11 100963130 100963255 -20880601 - CYRA11_Mm Unknown Y-chromosome -325 292 148 1 1355 373 205 51 0 chr11 100963825 100963903 -20879953 + ID4 SINE ID 1 82 -1 1 1355 324 321 12 0 chr11 100963903 100963987 -20879869 + L1MEg LINE L1 1875 1959 -4125 1 1355 246 267 51 39 chr11 100966292 100966370 -20877486 - B1F SINE Alu 0 149 71 1 1355 626 271 15 0 chr11 100966620 100966753 -20877103 + ID_B1 SINE B4 74 208 -16 1 1355 439 265 49 0 chr11 100966779 100966881 -20876975 + PB1D9 SINE Alu 2 108 -12 1 1355 219 69 0 0 chr11 100966881 100966910 -20876946 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 1 1355 932 239 34 5 chr11 100966914 100967120 -20876736 + B3 SINE B2 2 213 -3 1 1355 615 177 26 17 chr11 100967332 100967447 -20876409 - PB1D9 SINE Alu -3 117 2 1 1355 261 0 0 0 chr11 100967527 100967556 -20876300 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1355 212 350 103 0 chr11 100967809 100967906 -20875950 + MIRc SINE MIR 48 154 -114 1 1355 1224 48 0 13 chr11 100967930 100968079 -20875777 + B1_Mus1 SINE Alu 1 147 -1 1 1355 611 276 0 0 chr11 100968396 100968538 -20875318 + ID_B1 SINE B4 74 211 -13 1 1355 490 244 112 1 chr11 100968593 100968758 -20875098 + L1M3 LINE L1 3634 3821 -2325 1 1355 484 233 67 0 chr11 100969057 100969177 -20874679 - B1_Mm SINE Alu -10 137 10 1 1355 641 296 50 0 chr11 100969192 100969371 -20874485 - B4A SINE B4 -61 231 44 1 1355 392 286 29 0 chr11 100969430 100969535 -20874321 + ID_B1 SINE B4 1 108 -116 1 1355 294 339 25 50 chr11 100969558 100969679 -20874177 - PB1 SINE Alu -8 119 2 1 1355 480 290 25 25 chr11 100969705 100969864 -20873992 + RSINE1 SINE B4 3 161 -4 1 1355 529 298 38 8 chr11 100969907 100970039 -20873817 + B1F2 SINE Alu 2 137 -12 1 1355 221 0 0 33 chr11 100970039 100970069 -20873787 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1355 671 252 72 126 chr11 100970179 100970318 -20873538 + ID_B1 SINE B4 2 154 -70 1 1355 1162 36 43 0 chr11 100970318 100970458 -20873398 + B1_Mm SINE Alu 2 147 0 1 1355 671 252 72 126 chr11 100970458 100970540 -20873316 + ID_B1 SINE B4 155 211 -13 1 1355 568 128 266 0 chr11 100970979 100971088 -20872768 + B1_Mur2 SINE Alu 2 139 -10 1 1355 212 0 0 35 chr11 100971088 100971117 -20872739 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1355 1151 77 14 179 chr11 100971138 100971178 -20872678 + B2_Mm2 SINE B2 2 35 -160 1 1355 1272 48 0 0 chr11 100971178 100971325 -20872531 + B1_Mus2 SINE Alu 1 147 0 1 1355 1151 77 14 179 chr11 100971325 100971507 -20872349 + B2_Mm2 SINE B2 36 187 -8 1 1355 571 238 32 16 chr11 100972022 100972146 -20871710 + ID_B1 SINE B4 99 224 0 1 1355 268 333 48 0 chr11 100972453 100972537 -20871319 + PB1D10 SINE Alu 27 114 -3 1 1355 888 157 50 0 chr11 100972817 100972957 -20870899 + B1_Mur3 SINE Alu 2 148 -1 1 1355 239 173 0 19 chr11 100973059 100973112 -20870744 + GA-rich Low_complexity Low_complexity 3 54 0 1 1355 256 231 38 25 chr11 100973113 100973193 -20870663 + L1MC5 LINE L1 7300 7380 -581 1 1355 266 336 72 57 chr11 100973675 100973970 -20869886 + RLTR41 LTR ERV1 108 450 -82 1 1355 487 271 25 8 chr11 100974029 100974148 -20869708 + RSINE1 SINE B4 39 159 -6 1 1355 768 223 96 16 chr11 100974158 100974345 -20869511 + B3 SINE B2 5 206 -10 1 1355 1467 188 137 10 chr11 100974405 100974712 -20869144 + ORR1C2 LTR MaLR 39 384 0 1 1355 21 0 0 0 chr11 100974725 100974746 -20869110 + AT_rich Low_complexity Low_complexity 1 21 0 1 1355 666 156 12 177 chr11 100974764 100974928 -20868928 + B1_Mur3 SINE Alu 13 149 0 1 1355 1429 68 21 5 chr11 100974955 100975146 -20868710 + B2_Mm2 SINE B2 2 195 0 1 1355 601 268 91 7 chr11 100975155 100975220 -20868636 + ID SINE ID 3 80 -144 1 1355 346 289 50 42 chr11 100975220 100975339 -20868517 + PB1D7 SINE Alu 1 120 0 1 1355 509 283 14 7 chr11 100975385 100975524 -20868332 + RSINE1 SINE B4 3 142 -23 1 1355 471 35 0 0 chr11 100975540 100975597 -20868259 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1355 473 192 106 33 chr11 100975724 100975875 -20867981 - L1MB7 LINE L1 -37 6147 5986 1 1355 373 288 62 30 chr11 100975998 100976130 -20867726 + PB1D9 SINE Alu 1 148 0 1 1355 506 236 292 0 chr11 100976194 100976355 -20867501 - B3 SINE B2 -6 210 3 1 1355 533 212 20 108 chr11 100976433 100976543 -20867313 - ID_B1 SINE B4 -10 214 116 1 1355 246 32 0 0 chr11 100976543 100976574 -20867282 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1355 533 212 20 108 chr11 100976574 100976611 -20867245 - ID_B1 SINE B4 -109 115 80 1 1355 311 316 0 13 chr11 100976817 100976894 -20866962 + ID_B1 SINE B4 32 107 -117 1 1355 290 228 18 0 chr11 100977223 100977280 -20866576 + tRNA-Ala-GCY_ tRNA tRNA 9 66 -9 1 1355 214 296 56 0 chr11 100977280 100977294 -20866562 + BC1_Mm scRNA scRNA 15 89 -63 1 1355 327 158 35 0 chr11 100977488 100977545 -20866311 - HAL1-3A_ME LINE L1 -825 2033 1975 1 1355 347 296 143 0 chr11 100977557 100977655 -20866201 - B1_Mur2 SINE Alu -26 123 12 1 1355 241 253 0 39 chr11 100977780 100977801 -20866055 + polypurine Low_complexity Low_complexity 2 21 0 1 1355 1236 49 0 0 chr11 100977801 100977945 -20865911 + B1_Mus1 SINE Alu 5 148 0 1 1355 241 253 0 39 chr11 100977945 100978001 -20865855 + polypurine Low_complexity Low_complexity 22 75 0 1 1355 774 167 0 48 chr11 100978001 100978146 -20865710 + B1_Mus1 SINE Alu 9 146 -2 1 1355 315 104 0 0 chr11 100978944 100978992 -20864864 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1355 305 275 0 0 chr11 100979636 100979705 -20864151 + ID_B1 SINE B4 88 156 -68 1 1355 550 175 227 16 chr11 100979790 100979918 -20863938 + B3A SINE B2 2 156 -42 1 1355 880 154 28 7 chr11 100982868 100983012 -20860844 - B1_Mus1 SINE Alu -1 147 1 1 1355 354 302 19 9 chr11 100983014 100983121 -20860735 + MER46C DNA MER2_type 231 338 0 1 1355 875 244 83 0 chr11 100983201 100983406 -20860450 + ID_B1 SINE B4 3 224 0 1 1355 1074 108 0 45 chr11 100983408 100983563 -20860293 + B1_Mus1 SINE Alu 1 148 0 1 1355 645 161 137 48 chr11 100983741 100983915 -20859941 + B2_Mm2 SINE B2 2 186 -30 1 1355 559 269 47 27 chr11 100984130 100984279 -20859577 + RSINE1 SINE B4 6 157 -8 1 1355 681 232 95 76 chr11 100984450 100984660 -20859196 + B3 SINE B2 2 215 -1 1 1355 287 231 62 37 chr11 100986698 100986779 -20857077 - ID4 SINE ID 0 83 1 1 1355 1044 135 4 0 chr11 100986929 100987172 -20856684 + (CA)n Simple_repeat Simple_repeat 1 244 0 1 1355 587 248 45 8 chr11 100988300 100988434 -20855422 - RSINE1 SINE B4 -23 142 4 1 1355 617 201 142 66 chr11 100988437 100988487 -20855369 - B3 SINE B2 0 216 166 1 1355 513 0 0 0 chr11 100988487 100988544 -20855312 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1355 617 201 142 66 chr11 100988544 100988690 -20855166 - B3 SINE B2 -51 165 5 1 1355 960 133 28 0 chr11 100988779 100988922 -20854934 + B1_Mus1 SINE Alu 2 148 0 1 1355 729 176 56 14 chr11 100988940 100989084 -20854772 + B1_Mur4 SINE Alu 1 150 0 1 1355 299 349 91 59 chr11 100989189 100989375 -20854481 - MIR SINE MIR -51 211 20 1 1355 1289 41 0 0 chr11 100989396 100989543 -20854313 - B1_Mus2 SINE Alu 0 147 1 1 1355 711 311 20 20 chr11 100989582 100989782 -20854074 - B3 SINE B2 -10 206 7 1 1355 266 278 0 40 chr11 100989782 100989857 -20853999 - PB1D10 SINE Alu -5 112 41 1 1355 298 295 0 49 chr11 100989955 100990037 -20853819 - ID4 SINE ID -2 81 4 1 1355 198 0 0 0 chr11 100990116 100990138 -20853718 + (G)n Simple_repeat Simple_repeat 1 22 0 1 1355 470 33 0 0 chr11 100990711 100990771 -20853085 - B1_Mus1 SINE Alu -87 61 2 1 1355 385 230 28 57 chr11 100990771 100990817 -20853039 - B4 SINE B4 -147 145 43 1 1355 1095 76 0 0 chr11 100990937 100991069 -20852787 + B1_Mus2 SINE Alu 2 133 -14 1 1355 1067 125 11 0 chr11 100991069 100991245 -20852611 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1355 507 179 0 0 chr11 100991245 100991351 -20852505 + GA-rich Low_complexity Low_complexity 2 107 0 1 1355 942 180 105 11 chr11 100992256 100992447 -20851409 + B3 SINE B2 1 209 -7 1 1355 207 204 0 0 chr11 100992452 100992496 -20851360 + A-rich Low_complexity Low_complexity 1 44 0 1 1355 471 295 0 0 chr11 100992543 100992655 -20851201 - PB1D10 SINE Alu -5 112 1 1 1355 683 164 102 0 chr11 100992941 100993069 -20850787 - B1_Mus2 SINE Alu -2 145 5 1 1355 423 247 175 6 chr11 100993140 100993323 -20850533 - B3 SINE B2 -1 215 2 1 1355 365 300 19 48 chr11 100993405 100993510 -20850346 + RSINE1 SINE B4 44 145 -20 1 1355 504 0 0 0 chr11 100993513 100993569 -20850287 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1355 728 68 10 0 chr11 100993569 100993671 -20850185 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 1355 1181 26 245 0 chr11 100993714 100993869 -20849987 + B2_Mm1t SINE B2 1 193 0 1 1355 1061 101 142 0 chr11 100993879 100994048 -20849808 + B2_Mm1t SINE B2 1 193 0 1 1355 511 241 166 18 chr11 100994067 100994199 -20849657 - B3 SINE B2 -6 210 54 1 1355 270 0 0 0 chr11 100994199 100994229 -20849627 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1355 511 241 166 18 chr11 100994229 100994265 -20849591 - B3 SINE B2 -163 53 18 1 1355 255 232 216 23 chr11 100994377 100994552 -20849304 - MIR SINE MIR -18 250 32 1 1355 231 36 0 0 chr11 100994784 100994812 -20849044 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1355 182 156 0 22 chr11 100994996 100995042 -20848814 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1355 1316 20 0 0 chr11 100995111 100995258 -20848598 - B1_Mus2 SINE Alu 0 147 1 1 1355 356 245 255 0 chr11 100995258 100995352 -20848504 - RSINE1 SINE B4 -45 120 3 1 1355 351 209 30 0 chr11 100995440 100995507 -20848349 + PB1 SINE Alu 12 80 -47 1 1355 202 281 10 40 chr11 100995508 100995608 -20848248 + G-rich Low_complexity Low_complexity 6 102 0 1 1355 655 292 106 6 chr11 100995653 100995832 -20848024 + ID_B1 SINE B4 3 199 -25 1 1355 246 234 48 96 chr11 100996209 100996259 -20847597 + MER44D DNA MER2_type 9 56 -649 1 1355 276 280 80 45 chr11 100996259 100996371 -20847485 + PB1D10 SINE Alu 1 116 -1 1 1355 246 234 48 96 chr11 100996371 100996424 -20847432 + MER44D DNA MER2_type 57 107 -598 1 1355 180 0 0 0 chr11 100996622 100996642 -20847214 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1355 929 183 60 73 chr11 100996724 100996808 -20847048 - B3 SINE B2 -1 215 124 1 1355 826 189 13 13 chr11 100996808 100996958 -20846898 - B1_Mur4 SINE Alu 0 150 1 1 1355 929 183 60 73 chr11 100996958 100997091 -20846765 - B3 SINE B2 -93 123 1 1 1355 753 222 6 0 chr11 100997106 100997248 -20846608 - B1F SINE Alu 0 149 1 1 1355 554 233 81 52 chr11 100997305 100997441 -20846415 + B1_Mur2 SINE Alu 1 140 -9 1 1355 484 15 31 0 chr11 100997441 100997506 -20846350 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1355 527 78 13 0 chr11 100997540 100997617 -20846239 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 1355 272 290 29 29 chr11 100997628 100997731 -20846125 - PB1D10 SINE Alu -12 105 3 1 1355 265 238 32 0 chr11 100997796 100997859 -20845997 + MIR SINE MIR 69 133 -75 1 1355 317 162 0 149 chr11 100997855 100997942 -20845914 - L2c LINE L2 -2 3385 3312 1 1355 556 268 0 7 chr11 100998408 100998547 -20845309 + ID_B1 SINE B4 82 219 -5 1 1355 373 155 28 0 chr11 100998761 100998832 -20845024 + B1_Mur3 SINE Alu 76 148 -1 1 1355 907 140 148 22 chr11 100998846 100999029 -20844827 - B3 SINE B2 -5 211 6 1 1355 434 194 14 0 chr11 100999110 100999182 -20844674 - ID4 SINE ID -2 81 9 1 1355 1177 176 28 19 chr11 100999267 100999481 -20844375 - B3 SINE B2 0 216 1 1 1355 261 221 0 61 chr11 101000117 101000132 -20843724 + ID SINE ID 71 80 -144 1 1355 214 184 101 38 chr11 101000132 101000211 -20843645 + B1F2 SINE Alu 3 86 -63 2 1355 246 62 0 0 chr11 101000642 101000674 -20843182 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1355 930 150 13 13 chr11 101000674 101000823 -20843033 - B1_Mur3 SINE Alu 0 149 1 4 1355 891 241 9 28 chr11 101000996 101001214 -20842642 + B4A SINE B4 2 215 -77 5 1355 208 178 0 22 chr11 101001214 101001260 -20842596 + T-rich Low_complexity Low_complexity 2 46 0 6 1355 1002 170 0 0 chr11 101001264 101001411 -20842445 - B1_Mur4 SINE Alu -1 149 3 7 1355 790 200 29 0 chr11 101001430 101001570 -20842286 + B1_Mur4 SINE Alu 1 144 -6 8 1355 226 319 105 14 chr11 101001718 101001767 -20842089 - MER5A DNA MER1_type -33 156 106 9 1355 384 22 0 0 chr11 101001767 101001812 -20842044 + (CCG)n Simple_repeat Simple_repeat 2 46 0 1 1355 226 319 105 14 chr11 101001812 101001905 -20841951 - MER5A DNA MER1_type -84 105 1 9 1355 262 314 48 56 chr11 101001985 101002110 -20841746 - MLT1J LTR MaLR -2 510 387 1 1355 253 228 40 4 chr11 101002146 101002228 -20841628 + ORR1D1 LTR MaLR 1 85 -274 1 1355 462 287 24 91 chr11 101002263 101002428 -20841428 + RSINE1 SINE B4 11 164 -1 1 1355 384 22 0 0 chr11 101002439 101002484 -20841372 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1355 443 289 47 8 chr11 101002515 101002644 -20841212 + ID_B1 SINE B4 78 211 -13 1 1355 554 240 101 25 chr11 101002710 101002868 -20840988 + ID_B1 SINE B4 52 221 -3 1 1355 294 29 0 0 chr11 101003007 101003042 -20840814 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1 1355 626 261 12 53 chr11 101003682 101003852 -20840004 - B3 SINE B2 -6 210 48 1 1355 426 191 44 11 chr11 101003817 101003907 -20839949 - RSINE1 SINE B4 -40 125 33 1 1355 2056 106 23 7 chr11 101003915 101004218 -20839638 - L1_Mus4 LINE L1 0 6636 6329 2 1355 259 0 47 47 chr11 101004262 101004305 -20839551 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1355 847 146 0 15 chr11 101004305 101004437 -20839419 - B1_Mus1 SINE Alu -9 139 10 2 1355 431 134 0 12 chr11 101004453 101004536 -20839320 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 2 1355 1119 21 0 0 chr11 101004640 101004780 -20839076 + B1_Mus1 SINE Alu 9 148 0 2 1355 297 0 0 0 chr11 101004780 101004813 -20839043 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1355 343 210 0 0 chr11 101004813 101004875 -20838981 - B3A SINE B2 -86 112 51 2 1355 1590 27 21 21 chr11 101005616 101005808 -20838048 - B2_Mm1a SINE B2 0 193 2 2 1355 220 206 43 21 chr11 101005923 101006017 -20837839 + T-rich Low_complexity Low_complexity 2 97 0 2 1355 731 188 75 0 chr11 101006027 101006160 -20837696 - B1_Mur2 SINE Alu -6 143 1 2 1355 376 309 127 33 chr11 101006320 101006501 -20837355 - B4A SINE B4 -10 282 85 3 1355 1007 159 8 0 chr11 101006513 101006758 -20837098 + (TA)n Simple_repeat Simple_repeat 1 247 0 3 1355 551 289 8 0 chr11 101006758 101006886 -20836970 + B3 SINE B2 1 129 -87 3 1355 400 304 0 19 chr11 101006895 101006999 -20836857 - RSINE1 SINE B4 -61 104 3 3 1355 209 195 0 0 chr11 101007001 101007019 -20836837 + T-rich Low_complexity Low_complexity 24 41 0 3 1355 1246 61 0 0 chr11 101007019 101007166 -20836690 - B1_Mm SINE Alu 0 147 1 3 1355 209 195 0 0 chr11 101007166 101007188 -20836668 + T-rich Low_complexity Low_complexity 2 23 0 3 1355 833 181 218 11 chr11 101007197 101007376 -20836480 - B3 SINE B2 0 216 1 3 1355 1416 86 21 0 chr11 101007384 101007570 -20836286 - B2_Mm2 SINE B2 -5 190 1 3 1355 1012 297 28 14 chr11 101008280 101008567 -20835289 - B4A SINE B4 0 292 2 3 1355 324 158 0 0 chr11 101008633 101008690 -20835166 + (TTA)n Simple_repeat Simple_repeat 1 57 0 4 1355 214 344 31 20 chr11 101008695 101008793 -20835063 + L2c LINE L2 3057 3158 -229 4 1355 545 259 36 7 chr11 101009143 101009283 -20834573 - RSINE1 SINE B4 0 165 22 4 1355 442 141 19 107 chr11 101009526 101009629 -20834227 + B1_Mur4 SINE Alu 51 144 -6 4 1355 347 318 19 19 chr11 101011078 101011232 -20832624 + L1M5 LINE L1 4904 5057 -1089 4 1355 1372 109 5 5 chr11 101011404 101011598 -20832258 - B2_Mm2 SINE B2 0 195 2 4 1355 748 178 8 0 chr11 101011608 101011737 -20832119 - B1_Mus2 SINE Alu -7 140 11 4 1355 352 288 58 17 chr11 101011818 101011938 -20831918 - RSINE1 SINE B4 -38 127 3 4 1355 1227 41 7 0 chr11 101011956 101012102 -20831754 + B1_Mus2 SINE Alu 1 147 0 4 1355 187 116 45 23 chr11 101012149 101012193 -20831663 + (TATG)n Simple_repeat Simple_repeat 4 48 0 4 1355 277 233 302 0 chr11 101012203 101012289 -20831567 - PB1D10 SINE Alu -5 112 1 5 1355 885 41 32 0 chr11 101012428 101012551 -20831305 + B2_Mm1t SINE B2 67 193 0 5 1355 886 256 18 36 chr11 101012671 101012890 -20830966 + B3 SINE B2 2 216 0 5 1355 220 302 16 0 chr11 101012910 101012973 -20830883 + ID SINE ID 7 70 -154 5 1355 1091 81 0 0 chr11 101013081 101013217 -20830639 + B1_Mus2 SINE Alu 3 138 -9 5 1355 198 0 0 0 chr11 101013217 101013239 -20830617 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1355 340 240 431 20 chr11 101013360 101013513 -20830343 + B3 SINE B2 1 216 0 5 1355 289 216 74 15 chr11 101013554 101013622 -20830234 + PB1 SINE Alu 43 125 -2 5 1355 342 67 0 0 chr11 101013691 101013736 -20830120 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1355 210 26 77 0 chr11 101013785 101013824 -20830032 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 5 1355 2764 151 75 21 chr11 101013955 101014488 -20829368 + RMER15 LTR ERVL 14 575 0 6 1355 229 227 318 0 chr11 101014488 101014543 -20829313 - B3A SINE B2 -121 77 2 6 1355 225 303 39 26 chr11 101014578 101014656 -20829200 + ID4_ SINE ID 2 80 -3 6 1355 232 254 0 0 chr11 101014719 101014786 -20829070 + T-rich Low_complexity Low_complexity 1 67 0 6 1355 1054 135 0 0 chr11 101014786 101014934 -20828922 - B1_Mus1 SINE Alu 0 148 1 6 1355 331 324 19 107 chr11 101015170 101015329 -20828527 + ID_B1 SINE B4 80 224 0 5 1355 853 154 7 0 chr11 101015378 101015521 -20828335 + B1_Mur4 SINE Alu 1 144 -6 6 1355 369 307 19 44 chr11 101015387 101015547 -20828309 + B4A SINE B4 94 249 -43 6 1355 247 295 12 60 chr11 101015615 101015698 -20828158 - PB1D9 SINE Alu -25 95 17 6 1355 213 39 0 0 chr11 101015730 101015756 -20828100 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1355 1459 58 5 36 chr11 101015781 101015977 -20827879 - B2_Mm1t SINE B2 -3 190 1 6 1355 2579 135 12 19 chr11 101015987 101016410 -20827446 - Lx2 LINE L1 -1 6996 6577 7 1355 386 226 26 78 chr11 101016470 101016585 -20827271 - RSINE1 SINE B4 -30 135 27 7 1355 742 180 43 7 chr11 101016609 101016749 -20827107 - B1_Mur1 SINE Alu -2 147 3 7 1355 829 102 16 0 chr11 101016803 101016930 -20826926 + B1_Mus2 SINE Alu 19 147 0 7 1355 227 180 0 20 chr11 101018321 101018337 -20825519 + polypurine Low_complexity Low_complexity 3 17 0 7 1355 1656 36 5 0 chr11 101018337 101018529 -20825327 + B2_Mm1t SINE B2 1 193 0 7 1355 227 180 0 20 chr11 101018529 101018563 -20825293 + polypurine Low_complexity Low_complexity 18 51 0 7 1355 425 304 39 39 chr11 101019266 101019394 -20824462 - RSINE1 SINE B4 -29 136 9 7 1355 976 238 146 62 chr11 101019394 101019893 -20823963 + RMER4B LTR ERVK 1 572 -13 7 1355 201 74 0 0 chr11 101019893 101019920 -20823936 + (CATA)n Simple_repeat Simple_repeat 2 28 0 7 1355 841 246 129 18 chr11 101019979 101020267 -20823589 + MTE2a LTR MaLR 65 365 -14 8 1355 636 262 0 33 chr11 101020797 101020947 -20822909 + B1F SINE Alu 5 149 0 8 1355 323 303 40 20 chr11 101020947 101021048 -20822808 - PB1D10 SINE Alu -11 106 4 8 1355 305 218 62 37 chr11 101022522 101022603 -20821253 - ID4 SINE ID 0 83 1 8 1355 363 96 0 0 chr11 101027061 101027113 -20816743 + (TCCC)n Simple_repeat Simple_repeat 3 54 0 8 1355 212 287 83 21 chr11 101028295 101028391 -20815465 + MIRb SINE MIR 23 124 -144 8 1355 337 287 8 34 chr11 101030269 101030407 -20813449 + MIRc SINE MIR 31 160 -102 8 1355 24 0 0 0 chr11 101032583 101032607 -20811249 + GC_rich Low_complexity Low_complexity 1 24 0 8 1355 214 219 15 45 chr11 101032663 101032730 -20811126 + CT-rich Low_complexity Low_complexity 3 67 0 8 1355 198 320 88 24 chr11 101033929 101034054 -20809802 - L3b LINE CR1 -149 333 201 8 1355 396 0 0 0 chr11 101034140 101034184 -20809672 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1355 259 200 0 0 chr11 101034250 101034295 -20809561 - PB1 SINE Alu -64 63 19 9 1355 213 292 81 27 chr11 101034466 101034540 -20809316 - L3 LINE CR1 -137 4352 4275 9 1355 423 0 0 0 chr11 101036088 101036135 -20807721 + (TC)n Simple_repeat Simple_repeat 1 47 0 9 1355 184 365 37 28 chr11 101036157 101036264 -20807592 + MIR SINE MIR 30 137 -71 9 1355 219 313 0 0 chr11 101036647 101036714 -20807142 + C-rich Low_complexity Low_complexity 5 71 0 9 1355 211 140 0 23 chr11 101037027 101037071 -20806785 + T-rich Low_complexity Low_complexity 1 43 0 9 1355 729 63 0 0 chr11 101037331 101037426 -20806430 + (GA)n Simple_repeat Simple_repeat 2 96 0 9 1355 351 0 0 0 chr11 101041368 101041407 -20802449 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1355 606 256 38 0 chr11 101042163 101042296 -20801560 + B1F SINE Alu 9 146 -3 9 1355 221 279 88 0 chr11 101042352 101042420 -20801436 + B3A SINE B2 95 168 -30 1 1355 28 0 0 0 chr11 101042425 101042453 -20801403 + AT_rich Low_complexity Low_complexity 1 28 0 1 1355 189 0 0 0 chr11 101043220 101043241 -20800615 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1355 1249 252 21 7 chr11 101046960 101047244 -20796612 - B4 SINE B4 -3 289 2 1 1355 349 338 44 7 chr11 101047472 101047609 -20796247 + MIR3 SINE MIR 36 177 -31 1 1355 317 320 0 10 chr11 101048517 101048618 -20795238 - MIRc SINE MIR -15 253 154 1 1355 1209 29 0 0 chr11 101048625 101048762 -20795094 + B1_Mus1 SINE Alu 2 138 -10 1 1355 198 0 0 0 chr11 101048762 101048784 -20795072 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1355 936 224 102 0 chr11 101048867 101049063 -20794793 + ID_B1 SINE B4 1 216 -8 1 1355 260 275 192 0 chr11 101049066 101049186 -20794670 + RSINE1 SINE B4 2 144 -21 1 1355 673 214 15 15 chr11 101049207 101049340 -20794516 + B1_Mm SINE Alu 1 133 -14 1 1355 201 39 0 0 chr11 101049342 101049368 -20794488 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 1355 320 77 0 19 chr11 101050874 101050927 -20792929 + (CCCCAG)n Simple_repeat Simple_repeat 3 54 0 1 1355 830 137 64 14 chr11 101052141 101052282 -20791574 + B1_Mus1 SINE Alu 1 148 0 1 1355 313 267 111 0 chr11 101055181 101055271 -20788585 - PB1D7 SINE Alu -16 104 5 1 1355 407 303 30 0 chr11 101055273 101055372 -20788484 - PB1D7 SINE Alu 0 120 19 1 1356 236 254 27 40 chr11 101056574 101056648 -20787208 + ID4 SINE ID 5 77 -6 1 1356 986 291 14 21 chr11 101057179 101057467 -20786389 + B4 SINE B4 2 287 -5 1 1356 489 243 237 0 chr11 101057981 101058154 -20785702 - B3 SINE B2 -2 214 1 1 1356 639 277 30 69 chr11 101058161 101058363 -20785493 - B3A SINE B2 0 198 5 1 1356 698 192 0 16 chr11 101058380 101058502 -20785354 + PB1D9 SINE Alu 1 120 0 1 1356 1164 29 0 7 chr11 101058502 101058639 -20785217 + B1_Mus2 SINE Alu 1 137 -10 1 1356 185 86 57 0 chr11 101058652 101058687 -20785169 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1356 440 184 0 0 chr11 101058891 101058967 -20784889 + ID_B1 SINE B4 88 163 -61 1 1356 224 289 0 0 chr11 101059164 101059216 -20784640 + CT-rich Low_complexity Low_complexity 3 54 0 1 1356 334 252 17 86 chr11 101059335 101059452 -20784404 - PB1D10 SINE Alu -4 113 5 1 1356 951 194 59 0 chr11 101059477 101059663 -20784193 - B3A SINE B2 0 198 2 1 1356 222 368 0 14 chr11 101059813 101059882 -20783974 + PB1 SINE Alu 1 68 -59 1 1356 754 203 7 40 chr11 101059961 101060110 -20783746 - B1_Mur4 SINE Alu -4 146 3 1 1356 1239 153 29 15 chr11 101060161 101060367 -20783489 + B3 SINE B2 1 209 -7 1 1356 229 313 15 0 chr11 101061170 101061237 -20782619 - tRNA-Ala-GCY_ tRNA tRNA -6 69 2 1 1356 591 209 96 7 chr11 101061652 101061787 -20782069 - B1_Mur1 SINE Alu -2 147 1 1 1356 270 0 0 0 chr11 101062778 101062808 -20781048 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1 1356 626 173 6 187 chr11 101062809 101062980 -20780876 - B1_Mus2 SINE Alu -7 140 1 1 1356 437 329 34 14 chr11 101063042 101063190 -20780666 + RSINE1 SINE B4 15 165 0 1 1356 377 322 110 0 chr11 101063570 101063716 -20780140 - RSINE1 SINE B4 0 165 4 1 1356 1105 81 0 0 chr11 101063841 101063977 -20779879 + B1_Mus1 SINE Alu 1 136 -12 1 1356 645 14 0 0 chr11 101063979 101064053 -20779803 + (GAAAA)n Simple_repeat Simple_repeat 3 76 0 1 1356 884 167 6 0 chr11 101064054 101064222 -20779634 + GA-rich Low_complexity Low_complexity 1 169 0 1 1356 558 202 132 52 chr11 101064267 101064403 -20779453 + B1_Mur1 SINE Alu 2 148 -1 1 1356 277 262 80 45 chr11 101064860 101064873 -20778983 + 4.5SRNA scRNA scRNA 1 89 -3 1 1356 321 233 110 0 chr11 101064873 101064946 -20778910 + B1F2 SINE Alu 14 94 -55 1 1356 315 308 17 25 chr11 101065747 101065867 -20777989 + BC1_Mm scRNA scRNA 4 122 -30 1 1356 434 211 137 0 chr11 101066845 101066940 -20776916 + RSINE1 SINE B4 12 119 -46 1 1356 1164 62 7 0 chr11 101066940 101067085 -20776771 + B1_Mus1 SINE Alu 2 147 -1 1 1356 817 170 15 7 chr11 101068066 101068202 -20775654 - B1_Mus2 SINE Alu -6 141 5 1 1356 1264 108 11 0 chr11 101068836 101069012 -20774844 + B2_Mm1t SINE B2 2 179 -14 1 1356 336 140 0 53 chr11 101069059 101069126 -20774730 + B2_Mm2 SINE B2 47 109 -107 1 1356 237 83 0 0 chr11 101070001 101070037 -20773819 + (G)n Simple_repeat Simple_repeat 1 36 0 1 1356 340 79 228 119 chr11 101070040 101070113 -20773743 + BC1_Mm scRNA scRNA 4 87 -65 1 1356 1079 75 20 0 chr11 101070113 101070259 -20773597 + B1_Mur4 SINE Alu 2 150 0 1 1356 340 79 228 119 chr11 101070259 101070286 -20773570 + BC1_Mm scRNA scRNA 88 115 -37 1 1356 1084 127 34 28 chr11 101070301 101070479 -20773377 + B2_Mm2 SINE B2 3 181 -14 1 1356 528 93 361 0 chr11 101070516 101070624 -20773232 + B2_Mm2 SINE B2 47 193 -2 1 1356 229 351 0 0 chr11 101071121 101071198 -20772658 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1356 371 285 72 54 chr11 101071254 101071421 -20772435 - B4A SINE B4 -121 171 2 1 1356 885 179 192 16 chr11 101072121 101072303 -20771553 + B3 SINE B2 3 216 0 1 1356 801 184 50 0 chr11 101072315 101072456 -20771400 + B1_Mur2 SINE Alu 2 149 0 1 1356 270 254 18 0 chr11 101072649 101072704 -20771152 + B1_Mur3 SINE Alu 7 62 -87 1 1356 1322 81 6 0 chr11 101072822 101072995 -20770861 - B2_Mm1t SINE B2 -18 175 2 1 1356 368 109 0 0 chr11 101073037 101073101 -20770755 + Lx2 LINE L1 6934 6997 0 1 1356 1328 92 16 11 chr11 101073114 101073300 -20770556 + B2_Mm2 SINE B2 1 187 -8 1 1356 241 226 15 61 chr11 101073470 101073536 -20770320 - ID4_ SINE ID -19 64 2 1 1356 332 323 39 31 chr11 101073546 101073674 -20770182 - B1F1 SINE Alu -10 139 11 1 1356 189 0 0 0 chr11 101073678 101073699 -20770157 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1356 1049 109 0 7 chr11 101073723 101073871 -20769985 + B1_Mus1 SINE Alu 2 148 0 1 1356 441 95 0 0 chr11 101073871 101073934 -20769922 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 1 1356 337 239 204 0 chr11 101073948 101074036 -20769820 - PB1D9 SINE Alu -13 107 2 1 1356 690 251 85 0 chr11 101074243 101074442 -20769414 + B3 SINE B2 1 216 0 1 1356 1192 14 7 52 chr11 101074723 101074877 -20768979 - B1_Mus2 SINE Alu 0 147 1 1 1356 237 33 0 0 chr11 101076081 101076111 -20767745 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1356 330 91 0 0 chr11 101076111 101076166 -20767690 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1356 413 299 88 27 chr11 101076181 101076329 -20767527 - RSINE1 SINE B4 -4 161 5 1 1356 274 216 99 58 chr11 101076686 101076791 -20767065 + PB1D7 SINE Alu 13 120 0 1 1356 551 276 14 29 chr11 101076833 101076971 -20766885 - ID_B1 SINE B4 -88 136 1 1 1356 536 217 87 50 chr11 101076988 101077166 -20766690 - B3A SINE B2 0 216 36 1 1356 221 385 38 25 chr11 101077248 101077328 -20766528 + MIRm SINE MIR 173 253 -23 1 1356 22 0 0 0 chr11 101077520 101077542 -20766314 + AT_rich Low_complexity Low_complexity 1 22 0 1 1356 296 333 23 0 chr11 101077545 101077632 -20766224 + RSINE1 SINE B4 4 92 -73 1 1356 491 283 35 21 chr11 101077711 101077852 -20766004 - ID_B1 SINE B4 0 224 82 1 1356 958 31 154 23 chr11 101078058 101078188 -20765668 + B1_Mm SINE Alu 1 147 0 1 1356 228 288 57 90 chr11 101078971 101079093 -20764763 + B4A SINE B4 77 194 -98 1 1356 513 218 45 61 chr11 101079002 101079134 -20764722 + B1F2 SINE Alu 19 148 -1 1 1356 368 159 0 16 chr11 101079136 101079200 -20764656 + ID4 SINE ID 8 70 -13 1 1356 258 203 27 80 chr11 101079200 101079211 -20764645 + B4 SINE B4 10 80 -212 1 1356 619 208 25 0 chr11 101079467 101079587 -20764269 + B3 SINE B2 92 214 -2 1 1356 204 40 0 0 chr11 101079623 101079648 -20764208 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1 1356 693 176 32 0 chr11 101079677 101079802 -20764054 - B3 SINE B2 -86 130 2 1 1356 315 140 624 95 chr11 101080247 101080388 -20763468 + B3A SINE B2 2 216 0 1 1356 1196 61 0 0 chr11 101080406 101080553 -20763303 - B1_Mus1 SINE Alu 0 148 2 1 1356 607 261 20 34 chr11 101080555 101080702 -20763154 - B3 SINE B2 -1 215 71 1 1356 443 299 24 0 chr11 101080817 101080945 -20762911 - PB1D10 SINE Alu -9 140 1 1 1356 494 317 48 32 chr11 101081126 101081315 -20762541 - B3A SINE B2 -2 196 5 1 1356 1462 66 6 0 chr11 101081327 101081510 -20762346 + B2_Mm1t SINE B2 2 185 -8 1 1356 658 91 0 0 chr11 101081523 101081611 -20762245 + BC1_Mm scRNA scRNA 1 88 -64 1 1356 659 251 123 18 chr11 101081612 101081782 -20762074 - B3A SINE B2 -10 188 1 1 1356 715 182 36 14 chr11 101081916 101082055 -20761801 - B1_Mus2 SINE Alu 0 147 6 1 1356 183 42 0 0 chr11 101082230 101082254 -20761602 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1356 444 221 9 19 chr11 101082518 101082624 -20761232 - PB1D10 SINE Alu 0 117 13 1 1356 707 246 126 0 chr11 101083225 101083416 -20760440 + B3 SINE B2 2 216 0 1 1356 1484 64 37 0 chr11 101083434 101083622 -20760234 + B2_Mm2 SINE B2 1 195 0 1 1356 444 37 0 0 chr11 101083809 101083863 -20759993 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 2 1356 1195 65 7 0 chr11 101083868 101084021 -20759835 - B2_Mm2 SINE B2 -41 154 1 2 1356 622 212 128 3 chr11 101084203 101084380 -20759476 + B3A SINE B2 5 198 0 2 1356 255 292 48 16 chr11 101084385 101084510 -20759346 + L1M5 LINE L1 5428 5555 -618 2 1356 467 214 61 0 chr11 101084510 101084608 -20759248 + RSINE1 SINE B4 23 126 -39 2 1356 21 0 0 0 chr11 101084823 101084844 -20759012 + AT_rich Low_complexity Low_complexity 1 21 0 2 1356 597 249 97 31 chr11 101084848 101085043 -20758813 - B3 SINE B2 -6 210 3 2 1356 1300 89 33 0 chr11 101085118 101085298 -20758558 + B2_Mm2 SINE B2 1 186 -9 2 1356 232 100 50 0 chr11 101085343 101085383 -20758473 + B1_Mus2 SINE Alu 86 127 -20 2 1356 473 308 0 0 chr11 101085413 101085530 -20758326 - ID_B1 SINE B4 -33 191 75 2 1356 21 0 0 0 chr11 101085657 101085678 -20758178 + AT_rich Low_complexity Low_complexity 1 21 0 2 1356 446 286 101 43 chr11 101085940 101086079 -20757777 - ID_B1 SINE B4 -5 219 73 2 1356 244 275 54 77 chr11 101086248 101086378 -20757478 + ID_B1 SINE B4 79 205 -19 2 1356 480 182 144 32 chr11 101086266 101086391 -20757465 + B1_Mur3 SINE Alu 11 149 0 2 1356 544 276 92 40 chr11 101086665 101086839 -20757017 + B3 SINE B2 6 188 -28 2 1356 183 42 0 0 chr11 101086841 101086865 -20756991 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 1356 1116 37 15 0 chr11 101086892 101087028 -20756828 + B1_Mus2 SINE Alu 2 139 -8 2 1356 25 51 0 0 chr11 101087483 101087522 -20756334 + GC_rich Low_complexity Low_complexity 1 39 0 2 1356 447 139 0 14 chr11 101088001 101088074 -20755782 - B1_Mus2 SINE Alu -75 72 1 2 1356 1197 107 0 6 chr11 101088080 101088091 -20755765 - B2_Mm2 SINE B2 -25 170 160 2 1356 180 0 0 0 chr11 101088091 101088111 -20755745 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2 1356 1197 107 0 6 chr11 101088111 101088269 -20755587 - B2_Mm2 SINE B2 -36 159 2 2 1356 26 30 0 0 chr11 101088372 101088405 -20755451 + AT_rich Low_complexity Low_complexity 1 33 0 2 1356 1179 62 0 7 chr11 101088494 101088641 -20755215 - B1_Mus1 SINE Alu 0 148 3 2 1356 689 288 22 53 chr11 101088643 101088680 -20755176 - B3 SINE B2 -1 194 159 2 1356 360 77 0 0 chr11 101088680 101088732 -20755124 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1356 689 284 27 0 chr11 101088732 101088901 -20754955 - B3 SINE B2 -42 174 2 2 1356 374 121 0 33 chr11 101088943 101089003 -20754853 + B1_Mus1 SINE Alu 9 66 -82 2 1356 1871 125 30 166 chr11 101089003 101089444 -20754412 + RMER10B LTR ERVL 18 398 0 2 1356 635 140 21 0 chr11 101089446 101089539 -20754317 + B1_Mur2 SINE Alu 49 143 -6 2 1356 218 193 0 17 chr11 101089546 101089604 -20754252 + GA-rich Low_complexity Low_complexity 4 60 0 2 1356 365 287 24 77 chr11 101089639 101089809 -20754047 + RSINE1 SINE B4 4 164 -1 2 1356 186 133 0 0 chr11 101089828 101089858 -20753998 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 1356 1178 82 0 0 chr11 101089863 101090010 -20753846 + B1_Mus2 SINE Alu 1 147 0 2 1356 315 0 0 0 chr11 101090016 101090051 -20753805 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 1356 819 167 0 8 chr11 101090150 101090277 -20753579 - B1_Mus1 SINE Alu -21 127 2 2 1356 333 326 0 0 chr11 101090291 101090380 -20753476 - MER5B DNA MER1_type -89 89 1 2 1356 255 308 100 55 chr11 101093190 101093410 -20750446 - MIRb SINE MIR -38 230 1 2 1356 191 125 125 0 chr11 101093410 101093445 -20750411 + MIR3 SINE MIR 169 208 0 2 1356 881 139 14 7 chr11 101093927 101094065 -20749791 + B1_Mur2 SINE Alu 1 139 -10 2 1356 669 213 15 7 chr11 101094096 101094233 -20749623 + B3A SINE B2 27 164 -34 2 1356 234 0 0 0 chr11 101094236 101094262 -20749594 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1356 421 352 36 5 chr11 101094262 101094483 -20749373 - MIRb SINE MIR -12 256 22 2 1356 316 288 33 92 chr11 101094625 101094778 -20749078 - B1F SINE Alu -2 147 4 2 1356 482 246 33 25 chr11 101094672 101094793 -20749063 - ID_B1 SINE B4 -34 190 69 2 1356 433 228 157 48 chr11 101094981 101095259 -20748597 + RLTR41 LTR ERV1 166 470 -62 2 1356 317 318 122 24 chr11 101095395 101095588 -20748268 - MIRb SINE MIR -35 233 14 2 1356 985 136 117 36 chr11 101095618 101095889 -20747967 + BGLII_B LTR ERVK 1 329 -112 2 1356 3037 125 109 28 chr11 101095885 101096427 -20747429 - RLTR1D LTR ERV1 -16 589 3 2 1356 1012 92 0 0 chr11 101096428 101096559 -20747297 + BGLII_B LTR ERVK 311 441 0 2 1356 233 257 28 14 chr11 101096616 101096687 -20747169 - MTEb LTR MaLR 0 379 308 2 1356 436 296 7 36 chr11 101096729 101096832 -20747024 + MTEb LTR MaLR 71 170 -209 2 1356 917 201 16 11 chr11 101096832 101097023 -20746833 + B2_Mm2 SINE B2 1 192 -3 2 1356 436 296 7 36 chr11 101097023 101097059 -20746797 + MTEb LTR MaLR 171 206 -173 2 1356 418 307 10 0 chr11 101097056 101097157 -20746699 - ORR1E LTR MaLR -257 102 1 2 1356 278 59 0 0 chr11 101097183 101097217 -20746639 - MTEb LTR MaLR -47 332 299 2 1356 603 169 6 128 chr11 101097228 101097339 -20746517 + URR1A DNA MER1_type 51 153 -73 2 1356 1387 89 16 5 chr11 101097339 101097532 -20746324 + B2_Mm2 SINE B2 1 195 0 2 1356 261 0 0 0 chr11 101097540 101097569 -20746287 + (TTA)n Simple_repeat Simple_repeat 3 31 0 2 1356 603 169 6 128 chr11 101097569 101097604 -20746252 + URR1A DNA MER1_type 154 187 -39 2 1356 571 220 0 0 chr11 101097644 101097744 -20746112 - B3A SINE B2 -35 163 64 2 1356 1336 56 0 0 chr11 101097744 101097906 -20745950 - B2_Mm2 SINE B2 -33 162 1 2 1356 281 277 81 40 chr11 101097906 101098030 -20745826 + MIRb SINE MIR 104 232 -36 2 1356 235 333 14 0 chr11 101098554 101098626 -20745230 + ID4_ SINE ID 2 74 -9 2 1356 23 0 0 0 chr11 101098644 101098667 -20745189 + AT_rich Low_complexity Low_complexity 1 23 0 2 1356 209 323 30 15 chr11 101098710 101098776 -20745080 + MIR SINE MIR 2 68 -194 2 1356 283 313 0 0 chr11 101098776 101098843 -20745013 + ID4 SINE ID 11 77 -6 2 1356 259 31 0 0 chr11 101099098 101099130 -20744726 + U3 snRNA snRNA 1 32 -185 2 1356 486 33 0 0 chr11 101100227 101100287 -20743569 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1356 589 222 7 46 chr11 101100289 101100307 -20743549 + ID_B1 SINE B4 80 224 0 2 1356 1089 38 0 0 chr11 101100307 101100440 -20743416 + B1_Mus2 SINE Alu 15 147 0 2 1356 1081 197 35 5 chr11 101100535 101100734 -20743122 + B3 SINE B2 3 207 -9 2 1356 849 140 43 22 chr11 101100748 101100887 -20742969 - B1_Mur4 SINE Alu -6 144 3 2 1356 781 180 28 28 chr11 101100923 101101066 -20742790 - B1_Mur3 SINE Alu -5 144 2 2 1356 1157 69 7 0 chr11 101101099 101101244 -20742612 + B1_Mus2 SINE Alu 2 147 0 2 1356 1296 110 11 0 chr11 101101359 101101541 -20742315 - B2_Mm1t SINE B2 -9 184 1 2 1356 397 205 83 12 chr11 101101561 101101645 -20742211 + B1F SINE Alu 19 108 -41 2 1356 1149 99 11 34 chr11 101101652 101101669 -20742187 - B2_Mm2 SINE B2 -21 174 159 2 1356 206 32 0 31 chr11 101101669 101101701 -20742155 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1356 1360 25 0 0 chr11 101101701 101101860 -20741996 - B2_Mm1t SINE B2 -33 160 2 2 1356 1203 81 0 0 chr11 101101937 101102085 -20741771 - B1_Mus1 SINE Alu 0 148 1 2 1356 229 224 57 34 chr11 101102109 101102197 -20741659 - RLTR12B LTR ERVK -47 481 392 2 1356 1441 59 38 0 chr11 101102359 101102545 -20741311 - B2_Mm2 SINE B2 -1 194 2 2 1356 319 281 177 64 chr11 101102602 101102822 -20741034 - RLTR12B LTR ERVK -258 270 26 2 1356 1298 34 0 0 chr11 101102930 101103077 -20740779 - B1_Mm SINE Alu 0 147 1 2 1356 744 250 6 51 chr11 101103112 101103268 -20740588 - RSINE1 SINE B4 -6 159 11 2 1356 2123 103 36 63 chr11 101103551 101103824 -20740032 + ORR1A2 LTR MaLR 1 285 -42 2 1356 1253 40 0 0 chr11 101103824 101103972 -20739884 + B1_Mus1 SINE Alu 1 148 0 2 1356 2123 103 36 63 chr11 101103972 101104031 -20739825 + ORR1A2 LTR MaLR 286 324 -3 2 1356 707 236 0 7 chr11 101104139 101104288 -20739568 - B1_Mur1 SINE Alu 0 149 2 2 1356 502 242 53 58 chr11 101104329 101104518 -20739338 + L1MA4A LINE L1 5577 5764 -527 2 1356 308 259 12 47 chr11 101104548 101104633 -20739223 + RSINE1 SINE B4 25 106 -59 2 1356 211 167 20 20 chr11 101104747 101104796 -20739060 + A-rich Low_complexity Low_complexity 3 51 0 2 1356 216 0 0 0 chr11 101104835 101104859 -20738997 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1356 473 238 53 49 chr11 101104865 101105067 -20738789 + L1MA4A LINE L1 5781 6023 -280 2 1356 207 0 0 0 chr11 101105237 101105260 -20738596 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1356 195 304 169 25 chr11 101105367 101105485 -20738371 - MIRc SINE MIR -121 147 13 2 1356 663 269 72 0 chr11 101105725 101105918 -20737938 + ID_B1 SINE B4 2 208 -16 2 1356 486 0 0 0 chr11 101105922 101105976 -20737880 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 2 1356 790 220 12 35 chr11 101105993 101106163 -20737693 + B3A SINE B2 18 183 -15 2 1356 225 0 0 0 chr11 101106392 101106417 -20737439 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1356 201 220 45 106 chr11 101106890 101106956 -20736900 + MIRc SINE MIR 113 174 -94 2 1356 180 77 0 0 chr11 101106970 101106996 -20736860 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 1356 231 36 0 0 chr11 101107854 101107882 -20735974 + (CTG)n Simple_repeat Simple_repeat 1 28 0 2 1356 180 0 0 0 chr11 101109655 101109675 -20734181 + (CAGTT)n Simple_repeat Simple_repeat 3 22 0 2 1356 1008 8 106 0 chr11 101110179 101110302 -20733554 + B1_Mus1 SINE Alu 1 136 -12 2 1356 207 0 0 0 chr11 101110303 101110326 -20733530 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1356 234 0 0 0 chr11 101110357 101110383 -20733473 + (GGGTG)n Simple_repeat Simple_repeat 1 26 0 2 1356 216 0 0 0 chr11 101110384 101110408 -20733448 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1356 1187 61 68 52 chr11 101110854 101111045 -20732811 - B2_Mm2 SINE B2 0 195 2 3 1356 584 62 12 0 chr11 101111050 101111131 -20732725 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 3 1356 535 184 20 0 chr11 101111131 101111229 -20732627 - PB1D9 SINE Alu -12 108 9 3 1356 180 0 0 0 chr11 101111254 101111274 -20732582 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1356 264 30 0 0 chr11 101111282 101111315 -20732541 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 1356 1216 36 0 0 chr11 101111315 101111453 -20732403 - B1_Mm SINE Alu -8 139 2 3 1356 668 197 87 0 chr11 101111460 101111587 -20732269 - B1_Mus1 SINE Alu -9 139 2 3 1356 1279 98 16 5 chr11 101111809 101111994 -20731862 + B2_Mm2 SINE B2 8 194 -1 3 1356 1176 88 0 7 chr11 101112010 101112158 -20731698 + B1_Mus1 SINE Alu 2 148 0 3 1356 314 327 54 132 chr11 101112274 101112570 -20731286 - ORR1E LTR MaLR 0 359 87 3 1356 589 192 144 0 chr11 101112826 101112951 -20730905 + B1_Mur2 SINE Alu 1 143 -6 3 1356 709 254 63 21 chr11 101113159 101113348 -20730508 + B3A SINE B2 1 197 -1 3 1356 1480 65 16 0 chr11 101113373 101113559 -20730297 + B2_Mm2 SINE B2 1 189 -6 3 1356 259 278 0 0 chr11 101113574 101113628 -20730228 + ID_B1 SINE B4 96 149 -75 3 1356 263 215 104 30 chr11 101113628 101113641 -20730215 + B1F1 SINE Alu 15 86 -31 3 1356 1452 93 0 5 chr11 101113660 101113855 -20730001 - B2_Mm2 SINE B2 0 195 2 3 1356 236 321 70 35 chr11 101114159 101114330 -20729526 + L2 LINE L2 2205 2381 -1038 3 1356 24 0 0 0 chr11 101114830 101114854 -20729002 + GC_rich Low_complexity Low_complexity 1 24 0 3 1356 354 278 41 0 chr11 101115950 101116047 -20727809 - PB1D10 SINE Alu -5 112 12 3 1356 1453 87 0 5 chr11 101116339 101116535 -20727321 - B2_Mm2 SINE B2 0 195 1 3 1356 210 37 0 0 chr11 101116537 101116564 -20727292 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 3 1356 661 225 19 82 chr11 101116580 101116595 -20727261 - B2_Mm2 SINE B2 0 195 181 3 1356 1205 41 14 0 chr11 101116595 101116740 -20727116 - B1_Mm SINE Alu 0 147 1 3 1356 882 165 22 28 chr11 101116740 101116932 -20726924 - B3 SINE B2 -15 180 1 3 1356 186 43 0 0 chr11 101117010 101117033 -20726823 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1356 208 150 25 0 chr11 101117081 101117121 -20726735 + C-rich Low_complexity Low_complexity 2 42 0 3 1356 323 269 79 95 chr11 101118322 101118370 -20725486 - L1M4b LINE L1 -5064 2270 2220 3 1356 1199 68 0 0 chr11 101118370 101118517 -20725339 - B1_Mus1 SINE Alu 0 148 2 3 1356 872 178 7 0 chr11 101118522 101118668 -20725188 - B1_Mus1 SINE Alu 0 148 2 3 1356 323 269 79 95 chr11 101118668 101118802 -20725054 - L1M4b LINE L1 -5115 2219 2085 3 1356 837 204 132 21 chr11 101118802 101118992 -20724864 - B3 SINE B2 -4 212 2 3 1356 621 40 0 0 chr11 101122947 101123023 -20720833 + (TCC)n Simple_repeat Simple_repeat 2 77 0 3 1356 208 211 0 0 chr11 101123485 101123523 -20720333 + G-rich Low_complexity Low_complexity 3 40 0 3 1356 446 151 28 9 chr11 101125879 101125986 -20717870 + (TA)n Simple_repeat Simple_repeat 2 110 0 3 1356 304 343 81 11 chr11 101126100 101126274 -20717582 - MIRc SINE MIR -37 231 46 3 1356 219 36 0 0 chr11 101127084 101127112 -20716744 + (C)n Simple_repeat Simple_repeat 1 28 0 3 1356 186 318 34 86 chr11 101127244 101127361 -20716495 + L2c LINE L2 3261 3371 -16 3 1356 215 407 28 0 chr11 101127424 101127532 -20716324 - MIRc SINE MIR -146 122 12 3 1356 1439 53 26 21 chr11 101127767 101127961 -20715895 - B2_Mm2 SINE B2 0 195 1 3 1356 349 163 173 28 chr11 101127979 101128074 -20715782 + B1_Mur1 SINE Alu 24 113 -36 3 1356 743 239 12 6 chr11 101128160 101128320 -20715536 - RSINE1 SINE B4 -2 163 3 3 1356 518 267 40 140 chr11 101128738 101128807 -20715049 - B4 SINE B4 -2 290 222 3 1356 1315 65 48 11 chr11 101128807 101128994 -20714862 - B2_Mm2 SINE B2 0 195 2 3 1356 518 267 40 140 chr11 101128994 101129124 -20714732 - B4 SINE B4 -71 221 111 3 1356 764 130 8 31 chr11 101129001 101129128 -20714728 - B1_Mus2 SINE Alu -2 145 22 3 1356 1245 48 0 0 chr11 101129176 101129322 -20714534 - B1_Mm SINE Alu 0 147 2 3 1356 525 234 9 18 chr11 101129323 101129432 -20714424 - B4 SINE B4 -79 213 106 3 1356 407 283 113 0 chr11 101131529 101131635 -20712221 + ID_B1 SINE B4 92 209 -15 3 1356 346 280 169 0 chr11 101131635 101131647 -20712209 + B1F SINE Alu 11 148 -1 3 1356 858 164 47 37 chr11 101131719 101131909 -20711947 - B2_Mm2 SINE B2 -1 194 3 3 1356 187 167 0 0 chr11 101132114 101132144 -20711712 + MIRm SINE MIR 241 270 -6 3 1356 201 39 0 0 chr11 101132247 101132273 -20711583 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1356 982 157 29 6 chr11 101133253 101133426 -20710430 - URR1A DNA MER1_type 0 226 50 3 1356 287 261 123 0 chr11 101133559 101133624 -20710232 - ID4 SINE ID -10 73 1 3 1356 1174 68 0 7 chr11 101134048 101134196 -20709660 - B1_Mus1 SINE Alu 0 148 2 3 1356 180 0 0 0 chr11 101134250 101134270 -20709586 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 3 1356 864 174 0 13 chr11 101134270 101134421 -20709435 - B1_Mur3 SINE Alu 0 149 1 3 1356 279 266 105 11 chr11 101134460 101134555 -20709301 + PB1D9 SINE Alu 5 108 -12 3 1356 828 201 201 0 chr11 101134801 101134975 -20708881 - B3 SINE B2 -6 210 2 3 1356 200 274 113 21 chr11 101134983 101135080 -20708776 + MIRb SINE MIR 110 215 -53 3 1356 378 312 14 34 chr11 101135603 101135822 -20708034 - L1MC4 LINE L1 -4 8038 7792 3 1356 1243 43 0 0 chr11 101135909 101136050 -20707806 + B1_Mus2 SINE Alu 2 142 -5 3 1356 1110 96 11 11 chr11 101137071 101137251 -20706605 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1356 520 248 101 0 chr11 101140991 101141120 -20702736 - B1_Mur2 SINE Alu 0 149 8 3 1356 798 185 0 8 chr11 101141159 101141290 -20702566 - B3 SINE B2 -86 130 1 3 1356 667 162 14 28 chr11 101141682 101141823 -20702033 - B3 SINE B2 -42 153 9 3 1356 636 176 11 19 chr11 101142418 101142554 -20701302 + B3A SINE B2 2 134 -64 3 1356 765 31 0 0 chr11 101142572 101142668 -20701188 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1356 658 279 31 21 chr11 101142696 101142890 -20700966 + B3A SINE B2 1 196 -2 3 1356 224 30 30 0 chr11 101143037 101143070 -20700786 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1356 421 174 81 0 chr11 101143636 101143722 -20700134 - ID_B1 SINE B4 0 224 132 3 1356 274 275 57 38 chr11 101143722 101143742 -20700114 - PB1D9 SINE Alu 0 120 13 3 1356 295 328 136 84 chr11 101145580 101145986 -20697870 - L2c LINE L2 -2 3385 2959 3 1356 410 183 309 11 chr11 101146463 101146557 -20697299 - B1_Mus2 SINE Alu -21 126 5 3 1356 757 161 30 8 chr11 101146687 101146818 -20697038 + B1_Mur1 SINE Alu 14 147 -2 3 1356 257 229 37 32 chr11 101147187 101147254 -20696602 + BC1_Mm scRNA scRNA 1 80 -3 3 1356 1362 97 27 0 chr11 101147683 101147869 -20695987 + B2_Mm2 SINE B2 1 191 -4 3 1356 1323 92 22 0 chr11 101147879 101148063 -20695793 + B2_Mm2 SINE B2 2 189 -6 3 1356 363 44 0 0 chr11 101149284 101149329 -20694527 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 3 1356 541 223 9 18 chr11 101149330 101149444 -20694412 - B1_Mur2 SINE Alu -13 136 24 3 1356 216 309 0 0 chr11 101151625 101151680 -20692176 - ID4 SINE ID -24 59 5 3 1356 839 111 109 22 chr11 101151889 101152027 -20691829 - B1_Mur4 SINE Alu 0 150 1 3 1356 360 243 34 86 chr11 101152185 101152302 -20691554 - PB1D10 SINE Alu 0 117 7 3 1356 256 313 30 0 chr11 101152330 101152397 -20691459 + Charlie12 DNA MER1_type 12 80 -2793 3 1356 180 0 0 0 chr11 101153074 101153094 -20690762 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 3 1356 470 237 197 51 chr11 101153143 101153321 -20690535 - B3 SINE B2 -12 204 1 3 1356 667 98 205 0 chr11 101153351 101153473 -20690383 + B1_Mur1 SINE Alu 2 148 -1 3 1356 1257 102 32 0 chr11 101153489 101153675 -20690181 + B2_Mm1t SINE B2 1 192 -1 3 1356 334 358 135 32 chr11 101153900 101154307 -20689549 + L2b LINE L2 2927 3375 0 3 1356 851 216 102 5 chr11 101154342 101154528 -20689328 + B3 SINE B2 3 206 -10 3 1356 1273 117 17 0 chr11 101154855 101155034 -20688822 - B2_Mm2 SINE B2 -13 182 1 3 1356 1086 103 0 7 chr11 101155746 101155892 -20687964 + B1_Mus2 SINE Alu 1 145 -2 3 1356 398 293 30 0 chr11 101155932 101156031 -20687825 - RSINE1 SINE B4 -61 104 3 3 1356 1105 73 0 0 chr11 101157748 101157884 -20685972 - B1_Mus1 SINE Alu -12 136 1 3 1356 291 232 14 0 chr11 101157918 101157987 -20685869 + B4A SINE B4 2 71 -221 3 1356 276 238 105 92 chr11 101157977 101158112 -20685744 + B1_Mur2 SINE Alu 16 149 0 3 1356 335 235 19 56 chr11 101158197 101158305 -20685551 + B4A SINE B4 129 232 -60 3 1356 411 271 56 9 chr11 101159362 101159470 -20684386 - RSINE1 SINE B4 -8 157 45 3 1356 362 264 2 39 chr11 101159456 101159561 -20684295 - B1F SINE Alu -16 104 7 3 1356 332 215 38 12 chr11 101159776 101159856 -20684000 - ID4_ SINE ID 0 83 2 3 1356 368 207 183 0 chr11 101159881 101159963 -20683893 - ID_B1 SINE B4 -2 222 126 3 1356 457 239 111 7 chr11 101160040 101160175 -20683681 - B1F1 SINE Alu 0 149 1 3 1356 441 227 136 0 chr11 101160517 101160627 -20683229 - B1_Mur2 SINE Alu -21 128 4 3 1356 554 249 79 51 chr11 101160908 101161086 -20682770 - B3A SINE B2 -14 184 2 4 1356 267 331 87 87 chr11 101161262 101161339 -20682517 + B1F SINE Alu 1 65 -84 4 1356 990 118 14 7 chr11 101161339 101161484 -20682372 - B1_Mus1 SINE Alu -2 146 1 4 1356 267 331 87 87 chr11 101161484 101161555 -20682301 + B1F SINE Alu 66 148 -1 4 1356 495 262 246 49 chr11 101161578 101161984 -20681872 + L1MA6 LINE L1 5785 6270 -30 4 1356 239 196 36 89 chr11 101162025 101162081 -20681775 + B1_Mus1 SINE Alu 1 53 -95 4 1356 394 172 147 21 chr11 101162119 101162214 -20681642 + PB1D9 SINE Alu 1 107 -13 4 1356 1024 224 10 5 chr11 101162269 101162471 -20681385 + B3 SINE B2 2 204 -12 4 1356 538 229 17 8 chr11 101162714 101162833 -20681023 - PB1D7 SINE Alu 0 120 1 4 1356 351 0 0 0 chr11 101163805 101163844 -20680012 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1356 906 147 0 0 chr11 101163844 101163980 -20679876 - B1_Mur4 SINE Alu -13 137 2 4 1356 347 100 33 0 chr11 101164074 101164134 -20679722 + (TATG)n Simple_repeat Simple_repeat 3 64 0 4 1356 229 70 70 0 chr11 101164166 101164209 -20679647 + (TATG)n Simple_repeat Simple_repeat 3 48 0 4 1356 560 216 186 29 chr11 101164241 101164413 -20679443 + B3 SINE B2 1 199 -17 4 1356 333 0 0 0 chr11 101164419 101164456 -20679400 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1356 207 0 0 0 chr11 101164456 101164478 -20679378 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1356 240 313 38 66 chr11 101164594 101164700 -20679156 + RSINE1 SINE B4 3 105 -60 4 1356 1196 61 0 13 chr11 101165133 101165282 -20678574 - B1_Mm SINE Alu 0 147 1 4 1356 226 296 50 109 chr11 101165428 101165441 -20678415 - RLTR21 LTR ERVK -325 1247 1235 4 1356 481 229 119 0 chr11 101165441 101165559 -20678297 + B1_Mur1 SINE Alu 2 133 -16 4 1356 226 296 50 109 chr11 101165559 101165765 -20678091 - RLTR21 LTR ERVK -338 1234 1041 4 1356 315 122 0 0 chr11 101165765 101165814 -20678042 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 4 1356 513 207 16 72 chr11 101165822 101165947 -20677909 - ID_B1 SINE B4 0 224 107 4 1356 300 316 28 57 chr11 101165947 101165963 -20677893 - B1F SINE Alu 0 149 13 4 1356 378 0 0 0 chr11 101166003 101166045 -20677811 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4 1356 1111 83 7 14 chr11 101166047 101166058 -20677798 - B1_Mus1 SINE Alu -1 147 138 4 1356 387 0 0 0 chr11 101166058 101166101 -20677755 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1356 1111 83 7 14 chr11 101166101 101166236 -20677620 - B1_Mus1 SINE Alu -11 137 2 4 1356 1478 69 0 5 chr11 101166369 101166559 -20677297 + B2_Mm2 SINE B2 2 190 -5 4 1356 410 182 191 0 chr11 101166602 101166712 -20677144 + B3 SINE B2 86 216 0 4 1356 775 130 26 0 chr11 101166750 101166865 -20676991 - B1_Mur4 SINE Alu 0 150 33 4 1356 497 186 206 25 chr11 101166899 101167059 -20676797 - B2_Mm2 SINE B2 -5 190 2 4 1356 933 228 69 0 chr11 101167073 101167275 -20676581 - B3 SINE B2 0 216 1 4 1356 1219 83 41 18 chr11 101167365 101167536 -20676320 - B2_Mm1t SINE B2 -18 175 1 4 1356 648 219 0 55 chr11 101167605 101167750 -20676106 - B1_Mur1 SINE Alu -10 139 3 4 1356 1231 167 51 9 chr11 101167816 101168033 -20675823 + URR1A DNA MER1_type 1 226 0 4 1356 709 144 16 33 chr11 101168703 101168825 -20675031 + PB1D9 SINE Alu 1 120 0 4 1356 2402 170 48 37 chr11 101169206 101169694 -20674162 + RLTR12B LTR ERVK 5 507 -21 4 1356 1129 102 0 0 chr11 101169694 101169841 -20674015 - B1_Mus1 SINE Alu 0 148 2 4 1356 2402 170 48 37 chr11 101169841 101169870 -20673986 + RLTR12B LTR ERVK 508 528 0 4 1356 354 323 24 71 chr11 101169904 101170074 -20673782 + MIR SINE MIR 84 245 -17 4 1356 331 293 174 0 chr11 101170135 101170302 -20673554 - L2a LINE L2 0 3426 3231 4 1356 819 294 105 56 chr11 101170302 101170395 -20673461 + MLT1C LTR MaLR 38 140 -327 4 1356 1609 142 109 140 chr11 101170395 101170781 -20673075 + ORR1C1 LTR MaLR 1 374 -4 4 1356 819 294 105 56 chr11 101170781 101171095 -20672761 + MLT1C LTR MaLR 141 465 -2 4 1356 586 281 20 0 chr11 101171255 101171401 -20672455 + B1F SINE Alu 1 149 0 4 1356 329 227 30 0 chr11 101171441 101171507 -20672349 + PB1D10 SINE Alu 36 103 -14 4 1356 643 220 86 0 chr11 101171515 101171701 -20672155 - L1M5 LINE L1 -391 5782 5581 4 1356 230 307 12 62 chr11 101171704 101171784 -20672072 - B1F SINE Alu -34 115 40 4 1356 1619 179 7 7 chr11 101171850 101172125 -20671731 - MTC LTR MaLR 0 421 147 4 1356 255 250 0 0 chr11 101172122 101172166 -20671690 - PB1D9 SINE Alu -74 46 3 4 1356 228 345 0 0 chr11 101172123 101172181 -20671675 - ID_B1 SINE B4 -98 126 69 4 1356 207 0 0 0 chr11 101172187 101172210 -20671646 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1356 1158 58 0 0 chr11 101172210 101172349 -20671507 - B1_Mus1 SINE Alu -9 139 1 4 1356 1134 199 0 61 chr11 101172372 101172602 -20671254 - B3 SINE B2 0 216 1 4 1356 305 264 148 11 chr11 101172610 101172698 -20671158 - PB1D10 SINE Alu 0 127 28 4 1356 660 189 114 0 chr11 101172788 101172920 -20670936 + B1_Mur1 SINE Alu 1 147 -2 4 1356 546 306 36 22 chr11 101172981 101173118 -20670738 + RSINE1 SINE B4 8 146 -19 4 1356 1007 55 0 8 chr11 101173173 101173302 -20670554 + B1_Mus1 SINE Alu 21 148 0 4 1356 417 216 11 22 chr11 101173520 101173610 -20670246 - PB1 SINE Alu -7 120 32 4 1356 927 43 0 0 chr11 101173905 101174021 -20669835 + B1_Mus1 SINE Alu 33 148 0 4 1356 39 50 0 0 chr11 101174099 101174159 -20669697 + AT_rich Low_complexity Low_complexity 1 60 0 4 1356 477 282 0 24 chr11 101174462 101174589 -20669267 + ID_B1 SINE B4 88 211 -13 4 1356 212 316 40 61 chr11 101174619 101174767 -20669089 - L2 LINE L2 -1691 1728 1584 4 1356 992 222 173 1 chr11 101174790 101175057 -20668799 - MTD LTR MaLR -15 404 107 4 1356 1448 89 0 5 chr11 101175059 101175252 -20668604 + B2_Mm2 SINE B2 1 192 -3 4 1356 211 231 0 0 chr11 101175329 101175368 -20668488 - L2 LINE L2 -2074 1345 1307 4 1356 200 61 0 57 chr11 101175767 101175802 -20668054 + (CCTG)n Simple_repeat Simple_repeat 3 35 0 4 1356 1117 142 15 35 chr11 101175997 101176194 -20667662 - B2_Mm2 SINE B2 0 195 3 4 1356 251 275 58 0 chr11 101176434 101176503 -20667353 - MER2 DNA MER2_type -272 73 1 4 1356 1091 79 0 7 chr11 101176535 101176675 -20667181 + B1_Mus1 SINE Alu 1 139 -9 4 1356 432 130 0 0 chr11 101176691 101176760 -20667096 + (A)n Simple_repeat Simple_repeat 1 69 0 4 1356 279 260 40 0 chr11 101177551 101177651 -20666205 + (CGAG)n Simple_repeat Simple_repeat 1 104 0 4 1356 213 196 0 56 chr11 101178243 101178297 -20665559 + GA-rich Low_complexity Low_complexity 2 52 0 4 1356 240 35 0 0 chr11 101178843 101178872 -20664984 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1356 631 172 24 72 chr11 101179401 101179526 -20664330 - B1_Mur1 SINE Alu -1 148 30 4 1356 240 322 0 0 chr11 101179664 101179723 -20664133 - ID4 SINE ID -2 81 23 4 1356 1230 92 5 123 chr11 101179723 101179934 -20663922 + B2_Mm1t SINE B2 2 187 -6 4 1356 215 295 0 179 chr11 101179934 101179969 -20663887 - ID4_ SINE ID -54 29 4 4 1356 381 266 35 9 chr11 101180017 101180131 -20663725 + B1F SINE Alu 33 149 0 4 1356 468 250 9 9 chr11 101180366 101180471 -20663385 - RSINE1 SINE B4 -57 108 4 4 1356 219 36 0 0 chr11 101180567 101180595 -20663261 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1356 543 221 122 0 chr11 101182451 101182582 -20661274 - B1_Mur1 SINE Alu -1 148 2 4 1356 594 284 10 35 chr11 101182591 101182792 -20661064 - B3A SINE B2 0 198 3 4 1356 192 284 0 0 chr11 101184272 101184339 -20659517 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1356 275 65 22 0 chr11 101185181 101185227 -20658629 + (CATA)n Simple_repeat Simple_repeat 3 49 0 4 1356 673 175 80 7 chr11 101185548 101185686 -20658170 - B1_Mur3 SINE Alu -1 148 1 4 1356 302 217 179 12 chr11 101185690 101185774 -20658082 - B1F SINE Alu 0 149 52 4 1356 294 302 188 8 chr11 101185774 101185807 -20658049 - ID_B1 SINE B4 0 224 87 4 1357 22 0 0 0 chr11 101188321 101188343 -20655513 + GC_rich Low_complexity Low_complexity 1 22 0 4 1357 198 133 0 0 chr11 101188346 101188376 -20655480 - MIRc SINE MIR -117 151 122 4 1357 249 108 0 0 chr11 101189157 101189194 -20654662 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 4 1357 545 283 14 7 chr11 101189256 101189402 -20654454 - B1F2 SINE Alu -1 148 2 4 1357 1350 64 36 26 chr11 101190821 101191013 -20652843 + B2_Mm2 SINE B2 2 195 0 4 1357 1183 82 7 0 chr11 101191071 101191218 -20652638 - B1_Mus1 SINE Alu 0 148 1 4 1357 831 171 13 20 chr11 101191358 101191507 -20652349 - B1_Mur3 SINE Alu -1 148 1 4 1357 309 51 0 0 chr11 101194492 101194531 -20649325 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1357 916 136 14 48 chr11 101194536 101194683 -20649173 - B1_Mur4 SINE Alu -7 143 2 4 1357 1523 259 43 170 chr11 101195068 101196098 -20647758 - RMER13B LTR ERVK -9 899 1 4 1357 1132 75 0 20 chr11 101196284 101196434 -20647422 + B1_Mm SINE Alu 1 147 0 4 1357 24 32 0 0 chr11 101196434 101196465 -20647391 + AT_rich Low_complexity Low_complexity 1 31 0 4 1357 22 0 0 0 chr11 101196493 101196515 -20647341 + AT_rich Low_complexity Low_complexity 1 22 0 4 1357 956 146 21 0 chr11 101196516 101196660 -20647196 + B1_Mus1 SINE Alu 2 148 0 4 1357 440 276 53 47 chr11 101196676 101196847 -20647009 - B3A SINE B2 0 198 27 4 1357 1044 133 11 39 chr11 101197942 101198122 -20645734 - URR1A DNA MER1_type 0 226 52 4 1357 239 85 49 33 chr11 101199529 101199590 -20644266 + CT-rich Low_complexity Low_complexity 6 67 0 4 1357 573 220 126 50 chr11 101200174 101200356 -20643500 + B3A SINE B2 3 198 0 4 1357 900 159 14 0 chr11 101200363 101200508 -20643348 + B1_Mus2 SINE Alu 1 147 0 5 1357 2107 149 66 78 chr11 101201390 101201753 -20642103 + MTC LTR MaLR 5 377 -44 5 1357 1683 16 0 20 chr11 101201753 101201949 -20641907 - B2_Mm1a SINE B2 0 193 2 5 1357 2107 149 66 78 chr11 101201949 101202007 -20641849 + MTC LTR MaLR 378 421 0 5 1357 1198 68 0 0 chr11 101202318 101202464 -20641392 + B1_Mus2 SINE Alu 2 147 0 5 1357 3249 63 2 12 chr11 101202717 101203121 -20640735 - MTB LTR MaLR 0 400 1 5 1357 352 345 0 0 chr11 101203255 101203342 -20640514 + PB1D10 SINE Alu 1 87 -30 5 1357 618 314 65 30 chr11 101203342 101203656 -20640200 + ORR1E LTR MaLR 1 349 -30 5 1357 935 186 61 41 chr11 101203736 101203932 -20639924 - MTD LTR MaLR 0 419 220 5 1357 788 192 0 26 chr11 101203948 101204103 -20639753 + URR1B DNA MER1_type 73 223 -2 5 1357 747 220 28 0 chr11 101204386 101204527 -20639329 - B1_Mur1 SINE Alu 0 149 5 5 1357 473 261 43 17 chr11 101204634 101204751 -20639105 - B1F SINE Alu -1 148 29 5 1357 245 267 0 8 chr11 101205283 101205400 -20638456 + (CA)n Simple_repeat Simple_repeat 1 116 0 5 1357 227 380 7 13 chr11 101205403 101205555 -20638301 + (CATA)n Simple_repeat Simple_repeat 2 152 0 5 1357 465 341 0 6 chr11 101205637 101205817 -20638039 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1357 183 288 0 0 chr11 101205883 101205994 -20637862 + (CA)n Simple_repeat Simple_repeat 2 112 0 5 1357 233 125 0 59 chr11 101205995 101206046 -20637810 + CT-rich Low_complexity Low_complexity 1 48 0 5 1357 378 0 0 0 chr11 101206046 101206088 -20637768 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1357 754 134 101 0 chr11 101206101 101206220 -20637636 - B1_Mur3 SINE Alu -17 132 2 5 1357 1065 58 0 0 chr11 101206221 101206358 -20637498 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 5 1357 22 35 0 0 chr11 101206593 101206622 -20637234 + AT_rich Low_complexity Low_complexity 1 29 0 5 1357 273 57 0 0 chr11 101206780 101206815 -20637041 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1357 246 185 0 18 chr11 101206818 101206873 -20636983 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1357 488 333 0 0 chr11 101206967 101207081 -20636775 + B3A SINE B2 9 122 -76 5 1357 447 78 0 0 chr11 101207096 101207160 -20636696 + (CATA)n Simple_repeat Simple_repeat 4 67 0 5 1357 192 77 0 0 chr11 101207439 101207465 -20636391 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1357 2809 30 27 6 chr11 101207582 101207920 -20635936 - L1Md_F2 LINE L1 0 6582 6238 5 1357 302 43 22 0 chr11 101207938 101207946 -20635910 + (CAAAAA)n Simple_repeat Simple_repeat 2 9 0 5 1357 1212 68 0 0 chr11 101207946 101208094 -20635762 + B1_Mus1 SINE Alu 1 148 0 5 1357 302 43 22 0 chr11 101208094 101208131 -20635725 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 5 1357 1425 94 16 0 chr11 101208146 101208337 -20635519 + B2_Mm2 SINE B2 2 195 0 5 1357 341 297 78 8 chr11 101208348 101208477 -20635379 - B1F SINE Alu -11 138 1 5 1357 357 24 0 0 chr11 101208484 101208526 -20635330 + (CTG)n Simple_repeat Simple_repeat 1 42 0 5 1357 740 201 38 6 chr11 101208541 101208701 -20635155 - B3A SINE B2 -33 165 1 5 1357 199 93 23 23 chr11 101208813 101208857 -20634999 + (CCCCCA)n Simple_repeat Simple_repeat 1 44 0 5 1357 1315 225 96 3 chr11 101208858 101209170 -20634686 + ORR1D2 LTR MaLR 30 370 0 5 1357 354 265 54 90 chr11 101209264 101209430 -20634426 + RMER5 LTR ERV1 33 192 -342 5 1357 393 318 47 0 chr11 101209429 101209558 -20634298 + B1F SINE Alu 7 141 -8 5 1357 547 261 0 0 chr11 101209444 101209563 -20634293 + ID_B1 SINE B4 103 221 -3 5 1357 824 273 66 41 chr11 101209598 101209869 -20633987 + RMER5 LTR ERV1 218 495 -39 5 1357 734 235 84 16 chr11 101210365 101210555 -20633301 - ID_B1 SINE B4 -19 205 3 5 1357 3357 127 72 79 chr11 101210931 101211221 -20632635 + RMER6C LTR ERVK 1 298 -392 5 1357 1178 55 7 0 chr11 101211221 101211367 -20632489 + B1_Mm SINE Alu 1 147 0 5 1357 3357 127 72 79 chr11 101211367 101211771 -20632085 + RMER6C LTR ERVK 299 690 0 5 1357 814 226 38 164 chr11 101212260 101212552 -20631304 - MTE2b LTR MaLR -122 257 3 5 1357 351 0 0 0 chr11 101213293 101213332 -20630524 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1357 282 252 73 79 chr11 101213914 101214078 -20629778 - RLTR11A2 LTR ERVK -58 395 233 5 1357 756 265 40 68 chr11 101214059 101214408 -20629448 - RLTR11A2 LTR ERVK -242 335 1 5 1357 225 0 0 0 chr11 101214450 101214475 -20629381 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1357 235 368 44 0 chr11 101214482 101214550 -20629306 - RSINE1 SINE B4 -7 158 88 5 1357 21 0 0 0 chr11 101215126 101215147 -20628709 + AT_rich Low_complexity Low_complexity 1 21 0 5 1357 888 265 18 0 chr11 101215263 101215482 -20628374 - ID_B1 SINE B4 -1 223 1 5 1357 339 295 26 0 chr11 101215890 101215968 -20627888 - B3 SINE B2 -41 175 96 5 1357 2226 137 113 85 chr11 101215969 101216213 -20627643 + RLTR28 LTR ERVL 1 257 -267 5 1357 1142 95 0 7 chr11 101216213 101216361 -20627495 + B1_Mus2 SINE Alu 1 147 0 5 1357 2226 137 113 85 chr11 101216361 101216612 -20627244 + RLTR28 LTR ERVL 258 510 -14 5 1357 312 200 51 39 chr11 101216624 101216702 -20627154 - B3A SINE B2 -94 104 26 5 1357 423 111 0 4 chr11 101216741 101216812 -20627044 + B1_Mus2 SINE Alu 81 149 0 5 1357 243 283 31 165 chr11 101216756 101216883 -20626973 + B4 SINE B4 183 292 0 5 1357 204 67 0 0 chr11 101216941 101216971 -20626885 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1357 1133 62 7 52 chr11 101216971 101217125 -20626731 - B1_Mm SINE Alu 0 147 1 5 1357 216 0 0 0 chr11 101217364 101217388 -20626468 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1357 492 232 127 66 chr11 101217773 101217911 -20625945 + MIR SINE MIR 12 167 -95 5 1357 1570 27 5 16 chr11 101217911 101218101 -20625755 - B2_Mm1a SINE B2 -5 188 1 5 1357 492 232 127 66 chr11 101218101 101218128 -20625728 + MIR SINE MIR 168 187 -75 5 1357 1045 83 69 0 chr11 101218128 101218272 -20625584 + B2_Mm2 SINE B2 1 154 -41 5 1357 396 103 0 0 chr11 101218272 101218330 -20625526 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 5 1357 226 176 40 13 chr11 101218339 101218414 -20625442 + (TTTAA)n Simple_repeat Simple_repeat 4 80 0 5 1357 656 206 21 35 chr11 101218622 101218763 -20625093 - B1_Mus2 SINE Alu 0 147 9 5 1357 376 269 86 43 chr11 101218764 101218977 -20624879 - MLT1H LTR MaLR -2 547 334 5 1357 243 0 0 0 chr11 101219107 101219134 -20624722 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1357 623 293 0 7 chr11 101219247 101219388 -20624468 - RSINE1 SINE B4 -22 143 4 5 1357 290 307 162 45 chr11 101219394 101219592 -20624264 - ID_B1 SINE B4 -3 221 1 5 1357 392 287 17 17 chr11 101219597 101219714 -20624142 - MLT1H LTR MaLR -376 173 57 5 1357 573 282 75 27 chr11 101220347 101220533 -20623323 + B4A SINE B4 36 230 -62 5 1357 1314 175 0 9 chr11 101220533 101220746 -20623110 + B3 SINE B2 1 211 -5 5 1357 28 0 0 0 chr11 101220746 101220774 -20623082 + AT_rich Low_complexity Low_complexity 1 28 0 5 1357 289 212 41 96 chr11 101220776 101220849 -20623007 + B4A SINE B4 216 284 -8 5 1357 355 191 25 5 chr11 101221754 101221851 -20622005 - RLTR6-int LTR ERV1 -5581 2197 2123 5 1357 851 146 14 27 chr11 101222510 101222658 -20621198 - B1_Mur4 SINE Alu -1 149 4 5 1357 775 182 91 0 chr11 101222689 101222832 -20621024 - RSINE1 SINE B4 -2 163 8 5 1357 521 246 0 17 chr11 101222882 101222998 -20620858 - PB1 SINE Alu -12 115 2 5 1357 1073 91 14 0 chr11 101223166 101223309 -20620547 + B1_Mm SINE Alu 1 145 -2 5 1357 477 34 0 0 chr11 101223309 101223368 -20620488 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5 1357 514 203 214 6 chr11 101224040 101224199 -20619657 + ID_B1 SINE B4 22 213 -11 5 1357 885 58 0 0 chr11 101224208 101224328 -20619528 + (CA)n Simple_repeat Simple_repeat 1 120 0 5 1357 338 137 0 0 chr11 101225002 101225053 -20618803 - B1_Mur3 SINE Alu -21 128 78 5 1357 546 251 96 0 chr11 101225111 101225278 -20618578 + B3A SINE B2 1 183 -15 5 1357 312 259 42 85 chr11 101225306 101225424 -20618432 + HAL1-3A_ME LINE L1 1975 2087 -771 5 1357 516 206 48 10 chr11 101225596 101225699 -20618157 - PB1D10 SINE Alu -1 116 10 5 1357 770 197 0 0 chr11 101226897 101227029 -20616827 - B1_Mur2 SINE Alu -16 133 2 5 1357 306 328 128 11 chr11 101227074 101227262 -20616594 + ID_B1 SINE B4 14 223 -1 5 1357 1192 93 59 21 chr11 101227285 101227446 -20616410 + B2_Mm2 SINE B2 2 162 -33 5 1357 318 26 0 0 chr11 101227446 101227485 -20616371 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 1357 1192 93 59 21 chr11 101227485 101227509 -20616347 + B2_Mm2 SINE B2 163 193 -2 5 1357 325 208 53 53 chr11 101227628 101227704 -20616152 + ID4_ SINE ID 2 77 -6 5 1357 869 171 253 0 chr11 101227779 101227949 -20615907 + B3 SINE B2 3 215 -1 5 1357 715 171 244 34 chr11 101228253 101228429 -20615427 - B3 SINE B2 -2 214 2 5 1357 664 234 108 10 chr11 101229568 101229771 -20614085 - ID_B1 SINE B4 -1 223 1 5 1357 230 163 0 85 chr11 101229992 101230039 -20613817 - MIR SINE MIR -4 258 216 5 1357 301 148 56 0 chr11 101230039 101230093 -20613763 - HAL1-3A_ME LINE L1 -824 2034 1978 5 1357 461 273 218 4 chr11 101230106 101230345 -20613511 - B4 SINE B4 -2 290 1 5 1357 213 39 0 0 chr11 101230368 101230394 -20613462 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1357 779 163 69 8 chr11 101230394 101230524 -20613332 - B1_Mur2 SINE Alu -11 138 1 5 1357 514 198 144 0 chr11 101230561 101230672 -20613184 - B1F SINE Alu -21 128 2 5 1357 384 274 195 35 chr11 101230672 101230748 -20613108 - B4 SINE B4 -188 104 1 5 1357 380 306 44 18 chr11 101230756 101230869 -20612987 - PB1D10 SINE Alu 0 117 2 5 1357 254 295 138 35 chr11 101230889 101231005 -20612851 - ID_B1 SINE B4 -2 222 95 5 1357 489 17 0 0 chr11 101231015 101231073 -20612783 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1357 650 270 13 51 chr11 101231080 101231236 -20612620 - RSINE1 SINE B4 -12 153 4 5 1357 297 250 0 0 chr11 101231309 101231373 -20612483 - ID4 SINE ID -18 65 2 6 1357 414 265 211 70 chr11 101231408 101231664 -20612192 + B4 SINE B4 1 292 0 6 1357 364 257 0 0 chr11 101231721 101231791 -20612065 - PB1 SINE Alu -33 94 25 6 1357 556 214 0 0 chr11 101232569 101232667 -20611189 - ID_B1 SINE B4 0 224 127 6 1357 559 248 101 0 chr11 101232696 101232825 -20611031 + B3 SINE B2 63 204 -12 6 1357 279 0 0 0 chr11 101232828 101232859 -20610997 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1357 241 65 0 0 chr11 101232862 101232893 -20610963 - B1_Mur4 SINE Alu -7 143 113 6 1357 1125 45 8 0 chr11 101232893 101233027 -20610829 - B1_Mus1 SINE Alu -12 136 2 6 1357 207 100 0 0 chr11 101233050 101233080 -20610776 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1357 483 406 25 18 chr11 101233208 101233484 -20610372 - LTR16A LTR ERVL -159 292 15 6 1357 247 325 97 0 chr11 101233484 101233598 -20610258 - L2a LINE L2 -234 3192 3068 6 1357 212 288 128 46 chr11 101233737 101233846 -20610010 + L2b LINE L2 3258 3375 0 6 1357 222 268 0 14 chr11 101233859 101233931 -20609925 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 6 1357 230 338 0 0 chr11 101234332 101234403 -20609453 - ID4 SINE ID -9 74 4 6 1357 954 229 45 5 chr11 101234563 101234765 -20609091 + B3 SINE B2 7 216 0 6 1357 244 254 113 0 chr11 101234780 101234851 -20609005 + B1F SINE Alu 44 122 -27 6 1357 288 0 0 0 chr11 101234880 101234912 -20608944 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1357 248 214 0 0 chr11 101234918 101234960 -20608896 + B4 SINE B4 2 43 -249 6 1357 1556 43 5 0 chr11 101235009 101235195 -20608661 - B2_Mm1t SINE B2 -6 187 1 6 1357 309 225 73 24 chr11 101235244 101235326 -20608530 - ORR1D2 LTR MaLR -128 242 157 6 1357 443 187 7 0 chr11 101235336 101235361 -20608495 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1357 252 0 0 0 chr11 101235361 101235389 -20608467 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1357 443 187 7 0 chr11 101235389 101235502 -20608354 + (CA)n Simple_repeat Simple_repeat 1 113 0 6 1357 405 54 0 0 chr11 101235570 101235626 -20608230 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1357 441 179 40 50 chr11 101235658 101235758 -20608098 - ORR1D2 LTR MaLR -266 104 6 6 1357 260 255 64 73 chr11 101236151 101236261 -20607595 + PB1D7 SINE Alu 1 109 -11 6 1357 566 241 124 18 chr11 101236173 101236273 -20607583 + B4 SINE B4 106 209 -83 6 1357 504 0 0 0 chr11 101236273 101236329 -20607527 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1357 566 241 124 18 chr11 101236329 101236397 -20607459 + B4 SINE B4 210 291 -1 6 1357 495 281 16 0 chr11 101236827 101236948 -20606908 + RSINE1 SINE B4 43 165 0 6 1357 614 278 35 0 chr11 101237131 101237275 -20606581 + RSINE1 SINE B4 13 161 -4 6 1357 872 157 91 15 chr11 101239263 101239354 -20604502 - B3 SINE B2 0 216 121 6 1357 269 321 133 120 chr11 101239354 101239478 -20604378 + B4A SINE B4 1 109 -183 6 1357 1157 35 28 0 chr11 101239478 101239621 -20604235 - B1_Mus1 SINE Alu 0 148 2 6 1357 335 267 95 51 chr11 101239621 101239747 -20604109 + B4 SINE B4 110 253 -39 6 1357 1257 48 0 0 chr11 101239747 101239894 -20603962 + B1_Mm SINE Alu 1 147 0 6 1357 216 0 0 0 chr11 101239931 101239955 -20603901 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1357 681 201 22 7 chr11 101240018 101240153 -20603703 + B4A SINE B4 156 292 0 6 1357 2578 132 64 52 chr11 101241135 101241654 -20602202 - RLTR11A2 LTR ERVK 0 527 3 6 1357 209 329 71 0 chr11 101241661 101241746 -20602110 - MIR SINE MIR -78 184 94 6 1357 788 160 94 61 chr11 101241795 101241975 -20601881 - RMER10A LTR ERVL -250 192 7 6 1357 656 201 85 14 chr11 101241978 101242119 -20601737 + Lx8 LINE L1 6770 6920 -553 6 1357 549 249 218 35 chr11 101242199 101242515 -20601341 + MLT1A LTR MaLR 1 374 0 6 1357 240 111 0 0 chr11 101242615 101242660 -20601196 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1357 372 313 34 89 chr11 101242706 101242732 -20601124 + L1MEe LINE L1 721 746 -4108 6 1357 1187 54 0 13 chr11 101242732 101242881 -20600975 + B1_Mus1 SINE Alu 2 148 0 6 1357 372 313 34 89 chr11 101242881 101243033 -20600823 + L1MEe LINE L1 747 889 -3965 6 1357 279 278 86 76 chr11 101243083 101243188 -20600668 + ID4 SINE ID 2 107 -45 6 1357 542 235 132 132 chr11 101243239 101243655 -20600201 + RMER10A LTR ERVL 22 437 -5 6 1357 187 75 0 91 chr11 101243658 101243702 -20600154 + CT-rich Low_complexity Low_complexity 2 41 0 6 1357 1110 83 7 0 chr11 101243790 101243935 -20599921 + B1_Mus1 SINE Alu 3 148 0 6 1357 460 205 88 24 chr11 101243999 101244124 -20599732 + RMER17C LTR ERVK 278 410 0 6 1357 765 181 29 7 chr11 101244285 101244424 -20599432 - B1_Mur3 SINE Alu 0 149 8 6 1357 383 256 7 89 chr11 101244311 101244457 -20599399 - MT2B2 LTR ERVL -308 276 143 6 1357 414 304 133 0 chr11 101244457 101244615 -20599241 - L1M4 LINE L1 -380 5798 5620 6 1357 315 0 0 0 chr11 101244628 101244663 -20599193 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6 1357 1195 77 6 0 chr11 101244664 101244820 -20599036 - B2_Mm2 SINE B2 -37 158 2 6 1357 242 188 68 0 chr11 101244826 101244884 -20598972 - L1MC LINE L1 -723 5621 5556 6 1357 1157 75 0 0 chr11 101245456 101245602 -20598254 + B1_Mus2 SINE Alu 2 147 0 6 1357 195 42 0 0 chr11 101245602 101245626 -20598230 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1357 186 171 0 0 chr11 101245688 101245729 -20598127 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 6 1357 986 135 13 20 chr11 101245729 101245880 -20597976 - B1_Mur4 SINE Alu 0 150 1 6 1357 964 118 59 0 chr11 101245953 101246088 -20597768 + B1_Mus1 SINE Alu 1 143 -5 6 1357 336 48 0 0 chr11 101246089 101246131 -20597725 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1357 1757 110 2 154 chr11 101246131 101246333 -20597523 - RMER17C LTR ERVK -13 397 224 6 1357 474 18 0 0 chr11 101246333 101246388 -20597468 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1357 1757 110 2 154 chr11 101246388 101246625 -20597231 - RMER17C LTR ERVK -187 223 25 6 1357 394 200 94 62 chr11 101246589 101246717 -20597139 + B1F1 SINE Alu 13 144 -5 6 1357 238 140 0 50 chr11 101246732 101246792 -20597064 + GA-rich Low_complexity Low_complexity 4 60 0 6 1357 828 269 61 33 chr11 101247119 101247515 -20596341 - RLTR11B LTR ERVK -18 423 1 6 1357 363 314 0 0 chr11 101247652 101247827 -20596029 + (CATATA)n Simple_repeat Simple_repeat 5 179 0 6 1357 876 192 95 12 chr11 101247862 101248031 -20595825 - B3 SINE B2 -33 183 1 6 1357 253 108 0 0 chr11 101248032 101248069 -20595787 - B2_Mm2 SINE B2 -156 39 3 6 1357 253 248 153 57 chr11 101248098 101248222 -20595634 - RMER15 LTR ERVL 0 575 440 6 1357 333 0 0 0 chr11 101248614 101248651 -20595205 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1357 381 43 0 0 chr11 101248651 101248697 -20595159 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1357 838 226 36 31 chr11 101248697 101248889 -20594967 + MTEa LTR MaLR 187 379 0 6 1357 225 0 0 0 chr11 101249304 101249329 -20594527 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1357 646 235 7 42 chr11 101249340 101249482 -20594374 - RSINE1 SINE B4 -26 139 3 6 1357 421 168 69 10 chr11 101249491 101249593 -20594263 - B1_Mm SINE Alu 0 147 40 6 1357 291 173 0 0 chr11 101249621 101249702 -20594154 + C-rich Low_complexity Low_complexity 1 81 0 6 1357 281 306 14 0 chr11 101249740 101249812 -20594044 - ID_B1 SINE B4 -5 219 147 6 1357 1520 49 0 21 chr11 101249812 101250000 -20593856 - B2_Mm1a SINE B2 -8 185 2 6 1357 1070 130 0 6 chr11 101250546 101250724 -20593132 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 6 1357 261 0 0 0 chr11 101250767 101250796 -20593060 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1357 599 308 56 0 chr11 101250975 101251173 -20592683 + ID_B1 SINE B4 3 211 -13 6 1357 519 17 0 0 chr11 101251176 101251236 -20592620 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 6 1357 385 312 0 35 chr11 101251264 101251377 -20592479 + RSINE1 SINE B4 53 161 -4 6 1357 461 231 27 36 chr11 101251416 101251528 -20592328 + B2_Mm2 SINE B2 7 117 -78 6 1357 262 323 74 35 chr11 101251714 101251916 -20591940 - L1M5 LINE L1 -356 5768 5559 6 1357 314 138 17 0 chr11 101252062 101252120 -20591736 + CT-rich Low_complexity Low_complexity 3 61 0 6 1357 650 136 45 19 chr11 101252247 101252557 -20591299 + (CA)n Simple_repeat Simple_repeat 1 318 0 6 1357 1305 235 39 12 chr11 101252713 101253045 -20590811 - RLTR16 LTR ERVK -12 493 153 6 1357 206 118 0 0 chr11 101253045 101253079 -20590777 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 6 1357 827 198 43 0 chr11 101253079 101253241 -20590615 - RLTR16 LTR ERVK -336 169 1 6 1357 264 225 28 23 chr11 101253294 101253318 -20590538 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1357 3565 20 2 0 chr11 101253318 101253713 -20590143 + MTA_Mm LTR MaLR 1 396 0 6 1357 264 225 28 23 chr11 101253713 101253865 -20589991 + (CA)n Simple_repeat Simple_repeat 2 153 0 6 1357 426 20 0 0 chr11 101253866 101253917 -20589939 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1357 244 222 0 53 chr11 101253952 101254009 -20589847 - ID4_ SINE ID -27 56 3 6 1357 222 320 30 101 chr11 101254100 101254124 -20589732 - B2_Mm2 SINE B2 -10 185 2 6 1357 726 210 6 69 chr11 101254124 101254298 -20589558 - RSINE1 SINE B4 0 165 3 6 1357 320 274 44 142 chr11 101254455 101254638 -20589218 + MT2B LTR ERVL 100 264 -337 6 1357 641 190 8 33 chr11 101254533 101254653 -20589203 + B1_Mur3 SINE Alu 14 130 -19 6 1357 387 0 0 0 chr11 101254681 101254724 -20589132 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1357 1008 296 11 25 chr11 101254738 101255012 -20588844 - B4 SINE B4 -14 278 9 6 1357 421 53 93 0 chr11 101255247 101255322 -20588534 + L1Md_F3 LINE L1 6502 6583 -1 6 1357 210 143 0 0 chr11 101255325 101255360 -20588496 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1357 1191 42 7 0 chr11 101255368 101255511 -20588345 + B1_Mus2 SINE Alu 1 144 -3 7 1357 758 140 37 26 chr11 101255511 101255668 -20588188 + B3 SINE B2 14 177 -18 7 1357 965 76 6 94 chr11 101255678 101255838 -20588018 + B1_Mus1 SINE Alu 1 146 -2 7 1357 395 306 8 9 chr11 101256110 101256229 -20587627 + PB1 SINE Alu 2 110 -17 7 1357 347 143 18 0 chr11 101256239 101256295 -20587561 + B4A SINE B4 1 57 -235 7 1357 894 292 41 58 chr11 101257062 101257356 -20586500 + B4A SINE B4 1 289 -3 7 1357 853 137 15 0 chr11 101257372 101257503 -20586353 + RMER16 LTR ERVK 1 133 -400 7 1357 350 176 27 75 chr11 101257502 101257649 -20586207 + RMER17B LTR ERVK 314 453 -505 7 1357 228 86 0 0 chr11 101257649 101257684 -20586172 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1357 2043 89 7 3 chr11 101257684 101257977 -20585879 + RMER16 LTR ERVK 202 495 -38 7 1357 567 43 0 0 chr11 101258002 101258072 -20585784 + (TCC)n Simple_repeat Simple_repeat 2 71 0 7 1357 688 128 14 113 chr11 101258072 101258204 -20585652 - ORR1A2 LTR MaLR -85 242 122 7 1357 224 0 65 0 chr11 101258489 101258520 -20585336 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7 1357 839 121 114 0 chr11 101258536 101258668 -20585188 + B1_Mus1 SINE Alu 2 148 0 7 1357 26 30 0 0 chr11 101258671 101258704 -20585152 + AT_rich Low_complexity Low_complexity 1 33 0 7 1357 1240 120 16 11 chr11 101258712 101258799 -20585057 - U2 snRNA snRNA -1 187 101 7 1357 1347 97 22 0 chr11 101258799 101258984 -20584872 + B2_Mm2 SINE B2 1 189 -6 7 1357 1240 120 16 11 chr11 101258984 101259082 -20584774 - U2 snRNA snRNA -88 100 1 7 1357 861 267 29 24 chr11 101259102 101259309 -20584547 - B3 SINE B2 0 216 9 7 1357 220 132 18 54 chr11 101259310 101259366 -20584490 + CT-rich Low_complexity Low_complexity 1 54 0 7 1357 1344 89 10 25 chr11 101259366 101259429 -20584427 - B2_Mm2 SINE B2 -1 194 133 7 1357 1845 164 197 24 chr11 101259429 101259809 -20584047 - RLTR41 LTR ERV1 0 446 1 7 1357 1344 89 10 25 chr11 101259809 101259941 -20583915 - B2_Mm2 SINE B2 -63 132 2 7 1357 2280 148 70 27 chr11 101259990 101260323 -20583533 + MTC LTR MaLR 1 346 -75 7 1357 3066 30 202 0 chr11 101260323 101260718 -20583138 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1357 2280 148 70 27 chr11 101260718 101260786 -20583070 + MTC LTR MaLR 347 419 -2 7 1357 1143 71 0 0 chr11 101261251 101261392 -20582464 + B1_Mus1 SINE Alu 2 142 -6 7 1357 31 0 0 0 chr11 101261392 101261423 -20582433 + AT_rich Low_complexity Low_complexity 1 31 0 7 1357 533 206 89 48 chr11 101262027 101262191 -20581665 - B3 SINE B2 -9 186 21 7 1357 1834 170 59 28 chr11 101262191 101262213 -20581643 + RLTR9A LTR ERVK 1 18 -350 7 1357 620 211 71 81 chr11 101262213 101262424 -20581432 - B3 SINE B2 -5 211 3 7 1357 1834 170 59 28 chr11 101262424 101262758 -20581098 + RLTR9A LTR ERVK 19 368 0 7 1357 252 232 78 132 chr11 101262760 101262964 -20580892 + ETnERV-int LTR ERVK 4 196 -3118 7 1357 195 100 0 0 chr11 101263060 101263090 -20580766 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1357 1454 69 32 0 chr11 101263102 101263291 -20580565 + B2_Mm2 SINE B2 1 195 0 7 1357 432 0 0 0 chr11 101263331 101263379 -20580477 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1357 680 166 22 161 chr11 101263379 101263559 -20580297 + RLTR45-int LTR ERVK 2098 2252 -4992 7 1357 1790 106 4 18 chr11 101263559 101263837 -20580019 - LTRIS2 LTR ERV1 0 564 291 7 1357 1232 48 0 0 chr11 101263837 101263984 -20579872 + B1_Mus2 SINE Alu 1 147 0 7 1357 198 0 0 0 chr11 101263984 101264006 -20579850 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1357 669 192 88 42 chr11 101264616 101264795 -20579061 - B3 SINE B2 -9 186 1 7 1357 741 206 66 81 chr11 101264797 101265008 -20578848 - B3 SINE B2 -5 211 4 7 1357 729 226 78 84 chr11 101265022 101265201 -20578655 - B3A SINE B2 -13 182 5 7 1357 313 222 61 30 chr11 101265798 101265890 -20577966 + RSINE1 SINE B4 1 93 -199 7 1357 493 269 30 7 chr11 101265890 101266025 -20577831 + RSINE1 SINE B4 2 139 -26 7 1357 237 65 0 0 chr11 101266070 101266101 -20577755 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 7 1357 696 134 173 0 chr11 101266128 101266255 -20577601 + B1_Mur4 SINE Alu 2 150 0 7 1357 1233 54 0 0 chr11 101266257 101266404 -20577452 + B1_Mus2 SINE Alu 1 147 0 7 1357 551 60 23 57 chr11 101266702 101266790 -20577066 + B1_Mur4 SINE Alu 66 150 0 7 1357 426 219 168 0 chr11 101266787 101266906 -20576950 + B4 SINE B4 81 219 -73 7 1357 1200 54 7 0 chr11 101266973 101267120 -20576736 - B1_Mus1 SINE Alu 0 148 1 7 1357 774 121 154 14 chr11 101267156 101267299 -20576557 + B2_Mm2 SINE B2 2 164 -31 7 1357 1376 154 185 64 chr11 101267307 101267741 -20576115 + RMER4B LTR ERVK 39 460 -6 7 1357 195 114 0 0 chr11 101267870 101267905 -20575951 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1357 755 91 93 17 chr11 101268550 101268682 -20575174 + B1_Mus1 SINE Alu 1 149 0 7 1357 784 189 223 9 chr11 101268787 101269011 -20574845 + RMER15 LTR ERVL 257 528 -47 7 1357 1048 75 20 0 chr11 101269014 101269160 -20574696 + URR1A DNA MER1_type 78 226 0 7 1357 198 0 0 0 chr11 101269183 101269205 -20574651 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 7 1357 1505 68 16 0 chr11 101270080 101270272 -20573584 + B2_Mm2 SINE B2 1 195 0 7 1357 1185 68 7 0 chr11 101270351 101270497 -20573359 + B1_Mus1 SINE Alu 2 148 0 7 1357 1017 124 0 0 chr11 101270549 101270710 -20573146 + (GGAA)n Simple_repeat Simple_repeat 2 162 0 7 1357 303 146 0 0 chr11 101272017 101272072 -20571784 + (GCATG)n Simple_repeat Simple_repeat 2 56 0 7 1357 286 315 14 0 chr11 101273395 101273468 -20570388 + ID4_ SINE ID 2 75 -8 7 1357 193 127 18 35 chr11 101273493 101273550 -20570306 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 7 1357 268 278 0 0 chr11 101273643 101273697 -20570159 - L2c LINE L2 0 3387 3334 7 1357 339 25 0 0 chr11 101273975 101274015 -20569841 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 7 1357 309 273 39 0 chr11 101274022 101274099 -20569757 + ID4_ SINE ID 4 83 0 7 1357 270 254 15 15 chr11 101274693 101274761 -20569095 - L2c LINE L2 -957 2462 2395 7 1357 409 246 263 0 chr11 101274770 101274884 -20568972 + B1F2 SINE Alu 6 149 0 7 1357 595 285 73 0 chr11 101274889 101275026 -20568830 + RSINE1 SINE B4 6 152 -13 7 1357 940 206 51 5 chr11 101275690 101275777 -20568079 + URR1A DNA MER1_type 2 88 -138 7 1357 1695 31 0 0 chr11 101275777 101275970 -20567886 - B2_Mm1a SINE B2 0 193 1 7 1357 940 206 51 5 chr11 101275970 101276097 -20567759 + URR1A DNA MER1_type 89 225 -1 7 1357 526 207 177 7 chr11 101276358 101276499 -20567357 + RSINE1 SINE B4 1 165 0 7 1357 40 37 0 0 chr11 101276499 101276553 -20567303 + AT_rich Low_complexity Low_complexity 1 54 0 7 1357 1097 86 33 0 chr11 101276644 101276796 -20567060 + B2_Mm2 SINE B2 2 158 -37 7 1357 999 82 80 19 chr11 101276797 101276959 -20566897 + B2_Mm1t SINE B2 8 179 -14 7 1357 308 141 361 0 chr11 101276981 101277089 -20566767 + B2_Mm2 SINE B2 49 195 0 7 1357 273 241 0 69 chr11 101277118 101277185 -20566671 + A-rich Low_complexity Low_complexity 1 66 0 7 1357 1156 62 7 7 chr11 101277185 101277332 -20566524 + B1_Mus1 SINE Alu 2 148 0 7 1357 273 241 0 69 chr11 101277332 101277356 -20566500 + A-rich Low_complexity Low_complexity 67 85 0 7 1357 1205 62 0 0 chr11 101277356 101277502 -20566354 + B1_Mus2 SINE Alu 2 147 0 7 1357 273 241 0 69 chr11 101277502 101277525 -20566331 + A-rich Low_complexity Low_complexity 86 108 0 7 1357 191 307 28 73 chr11 101277660 101277769 -20566087 + L2 LINE L2 137 240 -3179 7 1357 181 261 43 0 chr11 101277781 101277827 -20566029 + L2a LINE L2 3139 3186 -189 7 1357 180 184 132 0 chr11 101277963 101278001 -20565855 + L2b LINE L2 3024 3066 -309 7 1357 198 256 95 71 chr11 101278212 101278296 -20565560 + L2a LINE L2 3339 3424 -2 7 1357 849 177 0 14 chr11 101279143 101279286 -20564570 - B1_Mur4 SINE Alu -8 142 2 7 1357 293 72 35 18 chr11 101279304 101279361 -20564495 - B2_Mm2 SINE B2 -6 189 132 7 1357 1180 56 14 0 chr11 101279409 101279553 -20564303 - B1_Mus1 SINE Alu 0 148 3 7 1357 1097 131 0 18 chr11 101279596 101279759 -20564097 - B2_Mm2 SINE B2 -35 160 1 7 1357 180 0 0 0 chr11 101279770 101279790 -20564066 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1357 21 0 0 0 chr11 101279839 101279860 -20563996 + AT_rich Low_complexity Low_complexity 1 21 0 7 1357 340 237 0 0 chr11 101279875 101279934 -20563922 - B3A SINE B2 -92 106 48 7 1357 243 0 0 0 chr11 101279936 101279963 -20563893 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1357 180 192 125 71 chr11 101280488 101280544 -20563312 - L3 LINE CR1 -3499 990 932 7 1357 404 272 0 0 chr11 101281127 101281219 -20562637 + B3 SINE B2 1 92 -124 7 1357 573 248 0 58 chr11 101281241 101281378 -20562478 + ID_B1 SINE B4 88 216 -8 7 1357 964 131 20 20 chr11 101281390 101281538 -20562318 + B1_Mur3 SINE Alu 2 149 0 7 1357 493 193 11 0 chr11 101281563 101281651 -20562205 + B3A SINE B2 1 89 -109 7 1357 367 276 92 0 chr11 101281785 101281883 -20561973 + PB1D10 SINE Alu 11 117 0 7 1357 339 250 167 173 chr11 101282210 101282251 -20561605 + RSINE1 SINE B4 3 36 -129 7 1357 1255 40 0 0 chr11 101282251 101282399 -20561457 + B1_Mus1 SINE Alu 1 148 0 7 1357 339 250 167 173 chr11 101282399 101282507 -20561349 + RSINE1 SINE B4 37 151 -14 7 1357 180 77 0 0 chr11 101282519 101282545 -20561311 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7 1357 679 112 53 53 chr11 101282565 101282678 -20561178 - B1_Mur4 SINE Alu -37 113 1 7 1357 390 213 75 130 chr11 101282678 101282719 -20561137 - MT2B LTR ERVL -449 152 120 7 1357 479 263 10 0 chr11 101282700 101282799 -20561057 + B3A SINE B2 11 110 -88 7 1357 405 0 0 0 chr11 101282806 101282851 -20561005 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1357 533 169 148 31 chr11 101282857 101282985 -20560871 + B1F2 SINE Alu 6 148 -1 7 1357 349 191 16 0 chr11 101283555 101283618 -20560238 - B3 SINE B2 -144 72 9 7 1357 901 150 0 45 chr11 101283618 101283772 -20560084 + B1_Mus2 SINE Alu 1 147 0 8 1357 306 0 0 0 chr11 101283782 101283816 -20560040 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 1357 303 298 130 6 chr11 101283875 101283905 -20559951 - B2_Mm1t SINE B2 -11 182 1 8 1357 470 285 114 15 chr11 101283905 101284037 -20559819 - RSINE1 SINE B4 -19 146 2 8 1357 856 203 104 5 chr11 101284120 101284313 -20559543 - B3 SINE B2 0 216 5 8 1357 1371 87 38 0 chr11 101284509 101284694 -20559162 + B2_Mm2 SINE B2 2 193 -2 8 1357 232 244 23 114 chr11 101284738 101284826 -20559030 + MT2B2 LTR ERVL 171 250 -334 8 1357 447 250 20 0 chr11 101284749 101284849 -20559007 + PB1D10 SINE Alu 16 117 0 8 1357 222 184 0 0 chr11 101286475 101286513 -20557343 + GA-rich Low_complexity Low_complexity 3 40 0 8 1357 265 324 0 51 chr11 101288021 101288099 -20555757 - ID4_ SINE ID -8 75 2 8 1357 22 35 0 0 chr11 101288102 101288131 -20555725 + AT_rich Low_complexity Low_complexity 1 29 0 8 1357 288 0 0 0 chr11 101288190 101288222 -20555634 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1357 502 252 19 0 chr11 101288237 101288340 -20555516 - RSINE1 SINE B4 -21 144 40 8 1357 563 305 19 0 chr11 101288344 101288498 -20555358 - ID_B1 SINE B4 -67 157 1 8 1357 1013 234 14 0 chr11 101288848 101289057 -20554799 + B3 SINE B2 2 213 -3 8 1357 1675 26 5 0 chr11 101289314 101289506 -20554350 + B2_Mm1t SINE B2 1 193 0 8 1357 258 130 0 217 chr11 101289826 101289845 -20554011 - ID_B1 SINE B4 0 224 171 8 1357 316 160 0 0 chr11 101289845 101289895 -20553961 - B1F SINE Alu -7 142 93 8 1357 241 270 68 0 chr11 101290295 101290369 -20553487 - ID_B1 SINE B4 -10 214 136 8 1357 225 0 0 0 chr11 101291138 101291163 -20552693 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 8 1357 1021 143 0 0 chr11 101291188 101291335 -20552521 + B1_Mus1 SINE Alu 2 148 0 8 1357 800 83 0 0 chr11 101291405 101291513 -20552343 - B1_Mus1 SINE Alu -1 147 40 8 1357 246 237 77 26 chr11 101291447 101291525 -20552331 - RLTR25B LTR ERVK -519 509 428 8 1357 722 227 84 20 chr11 101291563 101291765 -20552091 - B3 SINE B2 0 216 2 8 1357 742 215 114 10 chr11 101291904 101292106 -20551750 - ID_B1 SINE B4 0 224 2 8 1357 213 121 0 0 chr11 101292152 101292185 -20551671 + (TTCTCC)n Simple_repeat Simple_repeat 3 35 0 8 1357 1205 61 7 0 chr11 101292197 101292344 -20551512 - B1_Mus1 SINE Alu 0 148 1 8 1357 387 271 10 40 chr11 101292401 101292501 -20551355 - RSINE1 SINE B4 -68 97 1 8 1357 501 221 98 8 chr11 101292976 101293099 -20550757 + B1_Mur1 SINE Alu 5 138 -11 8 1357 287 211 0 34 chr11 101293559 101293618 -20550238 + PB1D10 SINE Alu 53 109 -8 8 1357 659 219 17 75 chr11 101293622 101293795 -20550061 + RSINE1 SINE B4 3 165 0 8 1357 376 246 124 25 chr11 101293857 101293978 -20549878 + L1MB8 LINE L1 5954 6086 -92 8 1357 383 116 14 8 chr11 101293978 101294085 -20549771 - B2_Mm2 SINE B2 -3 192 47 8 1357 843 60 351 0 chr11 101294117 101294251 -20549605 - B2_Mm2 SINE B2 -14 181 1 8 1357 369 267 67 121 chr11 101294294 101294376 -20549480 + ID SINE ID 7 80 -144 8 1357 330 290 23 181 chr11 101294376 101294553 -20549303 + B1F1 SINE Alu 1 149 0 8 1357 320 296 167 8 chr11 101295832 101295958 -20547898 + RSINE1 SINE B4 2 147 -18 8 1357 233 265 41 0 chr11 101297381 101297430 -20546426 - RSINE1 SINE B4 -61 104 54 8 1357 1173 78 26 0 chr11 101297524 101297678 -20546178 + B2_Mm2 SINE B2 1 158 -37 8 1357 204 67 0 0 chr11 101297679 101297709 -20546147 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 8 1357 982 77 8 0 chr11 101297776 101297906 -20545950 + B1_Mus1 SINE Alu 12 142 -6 8 1357 240 140 120 0 chr11 101297917 101297967 -20545889 - B3 SINE B2 -158 58 3 8 1357 1154 68 0 7 chr11 101297998 101298145 -20545711 - B1_Mm SINE Alu 0 147 2 8 1357 459 123 219 42 chr11 101298180 101298299 -20545557 - B1F2 SINE Alu 0 149 10 8 1357 566 185 71 16 chr11 101298309 101298435 -20545421 - ID_B1 SINE B4 -2 222 90 8 1357 767 250 66 6 chr11 101298756 101298937 -20544919 + B3 SINE B2 19 210 -6 8 1357 1679 103 35 74 chr11 101298941 101299224 -20544632 + L1Md_F2 LINE L1 6311 6582 0 8 1357 23 33 0 0 chr11 101299333 101299363 -20544493 + AT_rich Low_complexity Low_complexity 1 30 0 8 1357 1512 68 0 5 chr11 101299541 101299734 -20544122 + B2_Mm1a SINE B2 2 193 0 8 1357 183 80 0 0 chr11 101299750 101299775 -20544081 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1357 1142 43 50 0 chr11 101300075 101300214 -20543642 + B1_Mm SINE Alu 2 147 0 8 1357 210 71 0 0 chr11 101300214 101300242 -20543614 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1357 1653 32 0 0 chr11 101300441 101300630 -20543226 + B2_Mm1t SINE B2 1 189 -4 8 1357 1668 21 5 0 chr11 101301228 101301416 -20542440 + B2_Mm1t SINE B2 1 189 -4 8 1357 318 261 33 0 chr11 101301543 101301635 -20542221 + B1F SINE Alu 1 95 -54 8 1357 1044 101 0 0 chr11 101301661 101301799 -20542057 + B1_Mus1 SINE Alu 1 138 -10 8 1357 605 244 0 0 chr11 101301849 101301968 -20541888 + B1F SINE Alu 24 142 -7 8 1357 760 246 26 47 chr11 101301973 101302165 -20541691 + B3A SINE B2 4 191 -7 8 1357 1670 26 5 0 chr11 101302188 101302380 -20541476 + B2_Mm1t SINE B2 1 193 0 8 1357 935 181 26 95 chr11 101302412 101302644 -20541212 + B3 SINE B2 1 216 0 8 1357 627 26 0 0 chr11 101302648 101302725 -20541131 + B1_Mur4 SINE Alu 72 148 -2 8 1357 446 75 15 0 chr11 101302763 101302830 -20541026 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 1357 25 0 0 0 chr11 101302830 101302855 -20541001 + AT_rich Low_complexity Low_complexity 1 25 0 8 1357 216 67 0 0 chr11 101302979 101303009 -20540847 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1357 1277 27 0 0 chr11 101303009 101303156 -20540700 - B1_Mm SINE Alu 0 147 1 8 1357 40 21 0 0 chr11 101303175 101303222 -20540634 + AT_rich Low_complexity Low_complexity 1 47 0 8 1357 337 267 89 0 chr11 101303230 101303320 -20540536 - PB1D10 SINE Alu -13 104 7 8 1357 230 159 14 0 chr11 101303320 101303389 -20540467 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1357 243 200 0 57 chr11 101305487 101305540 -20538316 + RSINE1 SINE B4 49 98 -67 8 1357 362 317 64 29 chr11 101305563 101305735 -20538121 + B3A SINE B2 3 180 -18 8 1357 301 205 68 12 chr11 101305760 101305831 -20538025 - B1_Mur4 SINE Alu -78 71 1 8 1357 25 0 0 0 chr11 101306820 101306845 -20537011 + AT_rich Low_complexity Low_complexity 1 25 0 8 1357 5135 28 35 0 chr11 101306997 101307600 -20536256 - L1Md_F2 LINE L1 -12 6570 5947 8 1357 218 235 78 0 chr11 101307687 101307738 -20536118 + B1_Mur2 SINE Alu 79 133 -16 8 1357 270 200 100 0 chr11 101307800 101307870 -20535986 + PB1D9 SINE Alu 34 110 -10 8 1357 1615 36 5 0 chr11 101307987 101308179 -20535677 + B2_Mm1t SINE B2 1 193 0 8 1357 808 154 11 143 chr11 101308185 101308230 -20535626 + B2_Mm2 SINE B2 1 26 -169 8 1357 1202 61 0 0 chr11 101308230 101308377 -20535479 + B1_Mm SINE Alu 1 147 0 8 1357 808 154 11 143 chr11 101308377 101308520 -20535336 + B2_Mm2 SINE B2 27 164 -31 8 1357 1371 31 0 0 chr11 101308522 101308682 -20535174 + B2_Mm1t SINE B2 1 160 -33 8 1357 295 16 62 46 chr11 101308682 101308747 -20535109 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 8 1357 1159 118 5 101 chr11 101308761 101308801 -20535055 + B2_Mm1a SINE B2 2 34 -159 8 1357 892 103 7 58 chr11 101308801 101308956 -20534900 + B1_Mus1 SINE Alu 2 148 0 8 1357 1159 118 5 101 chr11 101308956 101309123 -20534733 + B2_Mm1a SINE B2 35 189 -4 8 1357 280 224 0 0 chr11 101309123 101309172 -20534684 - B3 SINE B2 -122 94 46 8 1357 631 196 59 15 chr11 101309196 101309331 -20534525 - B1_Mur4 SINE Alu 0 150 10 8 1357 304 262 88 143 chr11 101309203 101309350 -20534506 - B4 SINE B4 -73 219 81 8 1357 833 54 18 0 chr11 101309366 101309477 -20534379 - B1_Mm SINE Alu 0 147 35 8 1357 1219 48 0 0 chr11 101310138 101310285 -20533571 - B1_Mus1 SINE Alu 0 148 2 8 1357 263 255 0 0 chr11 101310859 101310910 -20532946 + B4 SINE B4 3 53 -239 8 1357 1252 63 121 0 chr11 101310912 101311086 -20532770 + B2_Mm2 SINE B2 1 195 0 8 1357 1413 63 5 26 chr11 101311129 101311324 -20532532 + B2_Mm1t SINE B2 3 193 0 8 1357 1186 119 6 0 chr11 101311359 101311527 -20532329 + B2_Mm1t SINE B2 2 170 -23 8 1357 323 75 0 19 chr11 101311616 101311670 -20532186 + B2_Mm2 SINE B2 137 189 -6 8 1357 309 254 191 69 chr11 101311661 101311792 -20532064 + B4 SINE B4 80 226 -66 8 1357 893 230 5 46 chr11 101311798 101312017 -20531839 + B3 SINE B2 5 214 -2 8 1357 1239 41 0 7 chr11 101312029 101312176 -20531680 - B1_Mm SINE Alu 0 147 2 8 1357 991 217 29 5 chr11 101312207 101312411 -20531445 + B3 SINE B2 4 212 -4 8 1357 318 233 27 0 chr11 101312442 101312515 -20531341 - B3 SINE B2 -141 75 1 8 1357 416 67 0 48 chr11 101312566 101312629 -20531227 + B1_Mur4 SINE Alu 90 149 -1 8 1357 692 238 43 112 chr11 101312675 101312907 -20530949 - B3 SINE B2 0 216 1 8 1357 1117 181 23 28 chr11 101312910 101313126 -20530730 - B3 SINE B2 0 216 2 8 1357 378 61 0 0 chr11 101313174 101313223 -20530633 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1357 616 196 58 7 chr11 101313224 101313363 -20530493 - RSINE1 SINE B4 -15 150 5 8 1357 236 262 82 0 chr11 101313504 101313565 -20530291 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 9 1357 654 210 41 20 chr11 101313721 101313867 -20529989 - B1_Mur1 SINE Alu 0 149 1 9 1357 416 250 74 0 chr11 101314030 101314138 -20529718 - PB1D10 SINE Alu -1 116 1 9 1357 1474 58 10 10 chr11 101314657 101314849 -20529007 - B2_Mm2 SINE B2 -2 193 2 9 1357 406 198 28 56 chr11 101314899 101315006 -20528850 + PB1D10 SINE Alu 13 116 -1 9 1357 607 283 113 66 chr11 101315075 101315332 -20528524 + B4 SINE B4 6 274 -18 9 1357 513 32 0 0 chr11 101315404 101315467 -20528389 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1357 845 147 0 14 chr11 101315479 101315617 -20528239 + B1_Mus2 SINE Alu 12 147 0 9 1357 207 0 0 0 chr11 101315627 101315650 -20528206 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1357 223 344 14 0 chr11 101315970 101316060 -20527796 - L2a LINE L2 -5 3421 3280 9 1357 286 308 93 50 chr11 101316340 101316490 -20527366 + MIRb SINE MIR 59 218 -50 9 1357 403 209 35 0 chr11 101316500 101316586 -20527270 + B1F SINE Alu 11 99 -50 9 1357 699 277 101 5 chr11 101316638 101316827 -20527029 + ID_B1 SINE B4 5 211 -13 9 1357 404 226 9 54 chr11 101316986 101317098 -20526758 + RSINE1 SINE B4 24 130 -35 9 1357 1197 54 0 33 chr11 101317218 101317370 -20526486 + B1_Mm SINE Alu 1 147 0 9 1357 875 147 6 0 chr11 101317370 101317533 -20526323 + GA-rich Low_complexity Low_complexity 3 166 0 9 1357 828 246 16 16 chr11 101318014 101318196 -20525660 + B3A SINE B2 1 182 -16 9 1357 338 306 86 33 chr11 101318215 101318367 -20525489 + MIRb SINE MIR 79 238 -30 9 1358 550 195 114 0 chr11 101319896 101320019 -20523837 - B1_Mur4 SINE Alu -9 141 5 9 1358 342 0 0 0 chr11 101322095 101322133 -20521723 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1358 377 200 11 101 chr11 101322133 101322222 -20521634 + RSINE1 SINE B4 85 165 0 9 1358 181 121 16 49 chr11 101322256 101322297 -20521559 + A-rich Low_complexity Low_complexity 2 41 0 9 1358 1226 48 7 0 chr11 101322297 101322442 -20521414 + B1_Mm SINE Alu 2 147 0 9 1358 181 121 16 49 chr11 101322442 101322461 -20521395 + A-rich Low_complexity Low_complexity 42 60 0 9 1358 667 111 174 45 chr11 101322468 101322600 -20521256 + B1_Mur4 SINE Alu 1 149 -1 9 1358 376 290 194 22 chr11 101322633 101322813 -20521043 + ID_B1 SINE B4 2 212 -12 9 1358 207 0 0 0 chr11 101322813 101322836 -20521020 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 9 1358 490 250 0 27 chr11 101322842 101322953 -20520903 + PB1D9 SINE Alu 1 108 -12 9 1358 223 327 0 0 chr11 101323001 101323056 -20520800 + ID_B1 SINE B4 84 138 -86 9 1358 21 0 0 0 chr11 101324185 101324206 -20519650 + AT_rich Low_complexity Low_complexity 1 21 0 9 1358 182 337 117 78 chr11 101324734 101324837 -20519019 + MIR SINE MIR 40 146 -116 9 1358 21 36 0 0 chr11 101327184 101327212 -20516644 + GC_rich Low_complexity Low_complexity 1 28 0 9 1358 1225 35 7 0 chr11 101327907 101328051 -20515805 - B1_Mus2 SINE Alu -2 145 1 9 1358 415 205 160 17 chr11 101328095 101328214 -20515642 - B1_Mur1 SINE Alu -9 140 5 9 1358 254 246 114 14 chr11 101328238 101328308 -20515548 - ID4 SINE ID -3 80 4 9 1358 919 181 0 7 chr11 101328452 101328602 -20515254 - B1_Mur1 SINE Alu 0 149 1 9 1358 204 40 0 0 chr11 101328622 101328647 -20515209 + (TATG)n Simple_repeat Simple_repeat 4 28 0 9 1358 234 91 0 0 chr11 101328649 101328682 -20515174 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 9 1358 202 306 35 0 chr11 101329478 101329648 -20514208 + G-rich Low_complexity Low_complexity 3 178 0 9 1358 237 291 0 0 chr11 101329539 101329625 -20514231 + (CGG)n Simple_repeat Simple_repeat 1 86 0 9 1358 186 43 0 0 chr11 101330671 101330694 -20513162 + (T)n Simple_repeat Simple_repeat 1 23 0 9 1358 1347 65 42 26 chr11 101330972 101330996 -20512860 - B2_Mm1a SINE B2 -1 192 161 9 1358 213 39 0 0 chr11 101330996 101331022 -20512834 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 9 1358 1347 65 42 26 chr11 101331022 101331186 -20512670 - B2_Mm1a SINE B2 -33 160 1 9 1358 954 178 64 46 chr11 101334106 101334324 -20509532 - URR1B DNA MER1_type 0 225 4 9 1358 1130 74 0 13 chr11 101334988 101335138 -20508718 + B1_Mus1 SINE Alu 1 148 0 9 1358 204 67 0 0 chr11 101335138 101335168 -20508688 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1358 479 255 0 0 chr11 101335174 101335272 -20508584 + PB1D7 SINE Alu 5 102 -18 9 1358 824 185 0 33 chr11 101336098 101336249 -20507607 - B1_Mur3 SINE Alu -2 147 2 9 1358 810 164 0 0 chr11 101336325 101336471 -20507385 + CT-rich Low_complexity Low_complexity 2 147 0 9 1358 548 187 154 54 chr11 101336556 101336671 -20507185 - Lx9 LINE L1 -1 7643 7532 9 1358 1219 55 0 0 chr11 101336671 101336817 -20507039 - B1_Mus2 SINE Alu 0 147 2 9 1358 548 187 154 54 chr11 101336817 101336922 -20506934 - Lx9 LINE L1 -113 7531 7401 9 1358 265 179 43 15 chr11 101336936 101337008 -20506848 - PB1 SINE Alu -2 125 78 9 1358 309 189 338 0 chr11 101337012 101337086 -20506770 + PB1D9 SINE Alu 5 103 -17 9 1358 315 0 0 0 chr11 101337105 101337140 -20506716 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1358 405 0 0 0 chr11 101337140 101337184 -20506672 + (TA)n Simple_repeat Simple_repeat 2 46 0 9 1358 1712 26 0 0 chr11 101337339 101337531 -20506325 + B2_Mm1a SINE B2 2 193 0 9 1358 1647 26 5 5 chr11 101337835 101338027 -20505829 + B2_Mm1t SINE B2 2 193 0 9 1358 1151 75 7 0 chr11 101338043 101338189 -20505667 + B1_Mm SINE Alu 1 147 0 9 1358 186 71 0 0 chr11 101338190 101338218 -20505638 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 9 1358 437 0 19 0 chr11 101338382 101338435 -20505421 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 9 1358 578 235 17 0 chr11 101338478 101338593 -20505263 - PB1D10 SINE Alu 0 117 1 9 1358 716 209 22 0 chr11 101339558 101339697 -20504159 - B1_Mus2 SINE Alu 0 147 6 9 1358 316 226 22 77 chr11 101339619 101339710 -20504146 - MT2B LTR ERVL -361 240 155 9 1358 977 83 0 117 chr11 101339736 101339899 -20503957 + B1_Mus1 SINE Alu 5 148 0 9 1358 392 77 0 15 chr11 101339899 101339965 -20503891 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 9 1358 203 269 0 0 chr11 101339971 101340023 -20503833 + MIRc SINE MIR 71 122 -146 9 1358 366 244 0 0 chr11 101341063 101341153 -20502703 - L1MB5 LINE L1 -15 6159 6070 9 1358 337 223 227 173 chr11 101341724 101341813 -20502043 + B4 SINE B4 1 89 -203 9 1358 363 23 0 0 chr11 101341813 101341857 -20501999 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1358 337 223 227 173 chr11 101341857 101341938 -20501918 + B4 SINE B4 90 219 -73 9 1358 763 187 15 0 chr11 101341938 101342072 -20501784 + B1_Mur1 SINE Alu 4 139 -10 9 1358 337 223 227 173 chr11 101342072 101342177 -20501679 + B4 SINE B4 220 291 -1 9 1358 185 304 0 35 chr11 101342381 101342439 -20501417 + MIR SINE MIR 45 100 -108 9 1358 256 276 207 0 chr11 101343023 101343110 -20500746 + ID_B1 SINE B4 112 216 -8 9 1358 249 241 30 121 chr11 101343110 101343122 -20500734 + PB1D9 SINE Alu 31 120 0 9 1358 476 213 35 44 chr11 101343144 101343257 -20500599 + B3A SINE B2 2 113 -85 9 1358 1476 57 5 20 chr11 101343297 101343493 -20500363 + B2_Mm1t SINE B2 1 193 0 9 1358 589 192 8 46 chr11 101343523 101343654 -20500202 + B1_Mm SINE Alu 2 127 -20 9 1358 981 198 42 42 chr11 101343700 101343916 -20499940 - B3 SINE B2 0 216 1 9 1358 1264 77 35 0 chr11 101344245 101344415 -20499441 - B2_Mm2 SINE B2 -19 176 1 9 1358 1011 114 0 51 chr11 101344617 101344774 -20499082 - B1_Mur3 SINE Alu 0 149 1 9 1358 327 306 32 24 chr11 101344812 101344936 -20498920 + MIRb SINE MIR 9 133 -135 9 1358 234 0 0 0 chr11 101345420 101345446 -20498410 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1358 779 44 289 0 chr11 101346035 101346149 -20497707 - B1_Mus1 SINE Alu 0 148 2 9 1358 458 244 8 42 chr11 101346150 101346270 -20497586 - RSINE1 SINE B4 -47 118 3 9 1358 238 167 0 0 chr11 101346276 101346318 -20497538 - ID_B1 SINE B4 0 224 183 9 1358 278 211 99 0 chr11 101346281 101346352 -20497504 - PB1D7 SINE Alu -5 115 38 9 1358 1375 92 16 0 chr11 101346514 101346698 -20497158 + B2_Mm2 SINE B2 1 187 -8 9 1358 207 0 0 0 chr11 101346718 101346741 -20497115 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9 1358 1567 174 93 3 chr11 101347637 101347960 -20495896 + ORR1B1 LTR MaLR 43 394 0 9 1358 1234 75 110 0 chr11 101348061 101348234 -20495622 - B2_Mm1t SINE B2 0 193 2 9 1358 443 96 0 93 chr11 101348277 101348369 -20495487 - B1_Mur4 SINE Alu -5 145 35 9 1358 320 221 238 61 chr11 101348365 101348529 -20495327 - B3 SINE B2 -23 193 1 9 1358 484 219 67 0 chr11 101349069 101349188 -20494668 + B1F2 SINE Alu 9 135 -14 9 1358 782 206 7 0 chr11 101349507 101349653 -20494203 - B1_Mur1 SINE Alu -1 148 2 9 1358 561 191 19 9 chr11 101349678 101349784 -20494072 - PB1D9 SINE Alu -13 107 1 9 1358 564 224 31 56 chr11 101349893 101350054 -20493802 - RSINE1 SINE B4 -7 158 2 9 1358 236 324 0 0 chr11 101350735 101350803 -20493053 - PB1D10 SINE Alu -49 68 1 9 1358 390 336 41 0 chr11 101351542 101351664 -20492192 - B1_Mur1 SINE Alu -20 129 3 9 1358 822 185 200 11 chr11 101351769 101351949 -20491907 - B3 SINE B2 0 216 3 9 1358 893 136 271 6 chr11 101351970 101352140 -20491716 - B3 SINE B2 -1 215 1 9 1358 1110 36 73 0 chr11 101352167 101352304 -20491552 - B1_Mm SINE Alu 0 147 1 9 1358 976 125 42 0 chr11 101352367 101352511 -20491345 + B1_Mur4 SINE Alu 1 150 0 1 1358 235 300 60 60 chr11 101352539 101352656 -20491200 + ID_B1 SINE B4 73 189 -35 1 1358 349 288 0 55 chr11 101352564 101352674 -20491182 + B1F1 SINE Alu 13 116 -1 1 1358 272 280 12 47 chr11 101352654 101352740 -20491116 + B4 SINE B4 68 150 -142 1 1358 355 238 23 23 chr11 101352683 101352769 -20491087 + B1_Mm SINE Alu 8 93 -54 1 1358 237 155 50 40 chr11 101352769 101352821 -20491035 + A-rich Low_complexity Low_complexity 1 52 0 1 1358 1413 53 31 16 chr11 101352821 101353013 -20490843 + B2_Mm2 SINE B2 1 195 0 1 1358 237 155 50 40 chr11 101353013 101353061 -20490795 + A-rich Low_complexity Low_complexity 53 101 0 1 1358 234 0 0 0 chr11 101353659 101353685 -20490171 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1358 848 111 123 53 chr11 101354435 101354606 -20489250 + URR1A DNA MER1_type 1 183 -43 1 1358 1235 86 5 46 chr11 101354968 101355163 -20488693 - B2_Mm1a SINE B2 -6 187 1 1 1358 656 276 24 41 chr11 101355228 101355398 -20488458 - B3A SINE B2 -31 167 1 1 1358 439 273 66 8 chr11 101355401 101355523 -20488333 - ID_B1 SINE B4 -5 219 91 1 1358 435 242 35 95 chr11 101356079 101356248 -20487608 + MER3 DNA MER1_type 1 159 -50 1 1358 819 167 39 33 chr11 101356217 101356397 -20487459 - B2_Mm2 SINE B2 -6 189 9 1 1358 27 0 0 0 chr11 101356410 101356437 -20487419 + AT_rich Low_complexity Low_complexity 1 27 0 1 1358 966 106 35 7 chr11 101356440 101356583 -20487273 - B1_Mus1 SINE Alu 0 148 2 1 1358 730 186 244 0 chr11 101356601 101356773 -20487083 - B3 SINE B2 0 216 3 1 1358 371 245 44 62 chr11 101356782 101356895 -20486961 - PB1D9 SINE Alu -5 115 5 1 1358 506 245 58 0 chr11 101356922 101357061 -20486795 - B1_Mur1 SINE Alu 0 149 3 1 1358 420 227 20 40 chr11 101357127 101357228 -20486628 - PB1D9 SINE Alu -13 107 9 1 1358 274 266 95 84 chr11 101357228 101357316 -20486540 - ID_B1 SINE B4 -13 211 13 1 1358 237 139 0 0 chr11 101357449 101357492 -20486364 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1358 267 276 108 16 chr11 101358723 101358852 -20485004 + MIRb SINE MIR 39 179 -89 1 1358 235 162 0 0 chr11 101359407 101359444 -20484412 + B1_Mur1 SINE Alu 100 136 -13 1 1358 418 222 72 27 chr11 101359447 101359558 -20484298 - PB1D9 SINE Alu -2 118 3 1 1358 411 253 207 28 chr11 101359596 101359775 -20484081 - B3 SINE B2 -1 215 5 1 1358 565 179 232 40 chr11 101359758 101359909 -20483947 + B3 SINE B2 33 212 -4 1 1358 3258 46 8 0 chr11 101360054 101360447 -20483409 + MTA_Mm LTR MaLR 1 396 0 1 1358 786 74 73 24 chr11 101360711 101360835 -20483021 - B1_Mm SINE Alu 0 147 18 1 1358 401 232 150 14 chr11 101361041 101361181 -20482675 + RSINE1 SINE B4 2 160 -5 1 1358 362 241 23 145 chr11 101361333 101361464 -20482392 + RSINE1 SINE B4 19 133 -32 1 1358 1228 49 0 0 chr11 101361672 101361815 -20482041 - B1_Mus1 SINE Alu -5 143 1 1 1358 213 253 222 13 chr11 101361963 101362082 -20481774 + L2a LINE L2 3258 3407 -19 1 1358 318 284 133 26 chr11 101362301 101362496 -20481360 - ID_B1 SINE B4 -6 218 3 1 1358 317 236 9 25 chr11 101362557 101362654 -20481202 + PB1D10 SINE Alu 1 92 -57 1 1358 435 38 0 0 chr11 101362723 101362776 -20481080 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 1 1358 465 19 0 0 chr11 101362776 101362829 -20481027 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1358 762 92 25 0 chr11 101362849 101362968 -20480888 + B1_Mus2 SINE Alu 14 135 -12 1 1358 245 51 26 0 chr11 101362969 101363008 -20480848 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1358 674 220 118 12 chr11 101365093 101365263 -20478593 - B3 SINE B2 0 216 29 1 1358 559 226 9 0 chr11 101365989 101366095 -20477761 - PB1D10 SINE Alu -6 111 5 1 1358 1085 172 66 19 chr11 101366143 101366356 -20477500 - URR1B DNA MER1_type 0 225 3 1 1358 337 264 17 60 chr11 101366845 101366962 -20476894 - RSINE1 SINE B4 -10 155 44 1 1358 631 186 18 0 chr11 101367040 101367153 -20476703 + B1_Mur1 SINE Alu 34 148 -1 1 1358 1182 35 0 27 chr11 101368172 101368308 -20475548 + B1_Mus1 SINE Alu 4 139 -9 1 1358 184 0 97 0 chr11 101368308 101368339 -20475517 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 1 1358 1182 35 0 27 chr11 101368339 101368351 -20475505 + B1_Mus1 SINE Alu 140 148 0 1 1358 1266 99 27 6 chr11 101369695 101369878 -20473978 + B2_Mm2 SINE B2 3 189 -6 1 1358 466 204 21 11 chr11 101369991 101370085 -20473771 + PB1D10 SINE Alu 1 95 -22 1 1358 212 299 120 30 chr11 101370117 101370217 -20473639 - PB1 SINE Alu -9 118 10 1 1358 21 57 0 0 chr11 101370217 101370252 -20473604 + AT_rich Low_complexity Low_complexity 1 35 0 1 1358 654 185 73 7 chr11 101370296 101370432 -20473424 - B1F2 SINE Alu -3 146 2 1 1358 381 242 22 0 chr11 101370655 101370746 -20473110 + B3 SINE B2 123 215 -1 1 1358 389 67 0 32 chr11 101371469 101371531 -20472325 + B1_Mur4 SINE Alu 1 60 -90 1 1358 239 178 112 56 chr11 101371533 101371640 -20472216 + RLTR25B LTR ERVK 397 509 -519 1 1358 787 58 0 0 chr11 101371577 101371681 -20472175 + B1_Mus2 SINE Alu 42 145 -2 1 1358 234 0 0 0 chr11 101371681 101371707 -20472149 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1358 387 246 222 28 chr11 101372124 101372304 -20471552 + B3 SINE B2 2 216 0 1 1358 370 230 0 0 chr11 101372347 101372421 -20471435 + ID_B1 SINE B4 143 216 -8 1 1358 236 329 0 0 chr11 101372469 101372545 -20471311 + ID4 SINE ID 2 77 -6 1 1358 21 36 0 0 chr11 101372960 101372988 -20470868 + AT_rich Low_complexity Low_complexity 1 28 0 1 1358 293 255 153 0 chr11 101373299 101373397 -20470459 + B1F2 SINE Alu 24 136 -13 1 1358 297 0 0 0 chr11 101373397 101373430 -20470426 + (CCAA)n Simple_repeat Simple_repeat 4 36 0 1 1358 253 301 51 34 chr11 101373430 101373455 -20470401 + B1_Mur4 SINE Alu 125 150 0 1 1358 386 298 68 34 chr11 101373544 101373690 -20470166 - B4A SINE B4 -60 232 82 1 1358 354 262 0 0 chr11 101373873 101373957 -20469899 - B4A SINE B4 -207 85 2 1 1358 382 298 98 13 chr11 101374358 101374511 -20469345 - ID_B1 SINE B4 -58 166 1 1 1358 492 190 0 29 chr11 101374997 101375100 -20468756 - B1_Mur3 SINE Alu -48 101 2 1 1358 487 278 17 0 chr11 101375175 101375290 -20468566 + PB1D9 SINE Alu 3 119 -1 1 1358 962 122 90 12 chr11 101375296 101375462 -20468394 + B2_Mm2 SINE B2 3 181 -14 1 1358 378 0 0 0 chr11 101375464 101375506 -20468350 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1358 257 214 143 0 chr11 101375521 101375591 -20468265 + B1_Mur4 SINE Alu 68 147 -3 1 1358 624 264 43 60 chr11 101375673 101375858 -20467998 + B3 SINE B2 9 190 -26 1 1358 31 26 0 0 chr11 101375858 101375896 -20467960 + AT_rich Low_complexity Low_complexity 1 38 0 1 1358 1128 61 59 113 chr11 101375974 101376178 -20467678 + B2_Mm2 SINE B2 1 193 -2 1 1358 504 45 0 0 chr11 101376204 101376271 -20467585 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1358 1007 161 194 0 chr11 101376796 101376976 -20466880 - B3 SINE B2 0 216 2 1 1358 296 315 56 7 chr11 101376977 101377121 -20466735 - B4A SINE B4 -51 241 91 1 1358 630 196 43 7 chr11 101377193 101377332 -20466524 - B1_Mur2 SINE Alu 0 149 6 1 1358 228 211 42 14 chr11 101378046 101378118 -20465738 - ID_B1 SINE B4 -70 154 81 1 1358 236 177 94 31 chr11 101379256 101379320 -20464536 - B3A SINE B2 -130 68 1 1 1358 30 27 0 0 chr11 101379320 101379357 -20464499 + AT_rich Low_complexity Low_complexity 1 37 0 1 1358 914 153 37 42 chr11 101379479 101379508 -20464348 - B2_Mm1t SINE B2 -2 191 160 1 1358 261 0 0 0 chr11 101379508 101379537 -20464319 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 1358 1055 100 0 6 chr11 101379537 101379698 -20464158 - B2_Mm2 SINE B2 -34 161 2 1 1358 739 133 0 105 chr11 101379787 101379930 -20463926 + B1_Mur4 SINE Alu 23 150 0 1 1358 185 0 40 0 chr11 101379936 101379961 -20463895 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1358 465 177 10 14 chr11 101379993 101380095 -20463761 + B1_Mur2 SINE Alu 19 143 -6 1 1358 215 340 38 85 chr11 101381180 101381286 -20462570 - PB1D10 SINE Alu 0 117 17 1 1358 474 281 93 33 chr11 101381412 101381563 -20462293 + RSINE1 SINE B4 3 162 -3 1 1358 614 195 16 0 chr11 101381978 101382101 -20461755 - B1_Mur1 SINE Alu 0 149 25 1 1358 1709 21 0 0 chr11 101382198 101382391 -20461465 + B2_Mm1a SINE B2 1 193 0 1 1358 1145 75 110 0 chr11 101382409 101382582 -20461274 + B2_Mm2 SINE B2 4 195 0 1 1358 212 259 229 49 chr11 101382681 101382803 -20461053 + RSINE1 SINE B4 20 163 -2 1 1358 1156 41 7 40 chr11 101382825 101382977 -20460879 + B1_Mus2 SINE Alu 1 147 0 1 1358 306 67 0 0 chr11 101382979 101383024 -20460832 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1358 471 212 52 17 chr11 101383983 101384098 -20459758 + PB1D9 SINE Alu 2 120 0 1 1358 22 0 0 0 chr11 101384208 101384230 -20459626 + AT_rich Low_complexity Low_complexity 1 22 0 1 1358 216 214 63 182 chr11 101384266 101384337 -20459519 - B3A SINE B2 -87 111 37 1 1358 749 183 220 11 chr11 101384337 101384514 -20459342 - B3 SINE B2 0 216 3 1 1358 216 214 63 182 chr11 101384514 101384568 -20459288 - B3A SINE B2 -162 36 1 1 1358 781 255 0 15 chr11 101388105 101388300 -20455556 - B3 SINE B2 -24 192 1 1 1358 773 192 20 0 chr11 101388323 101388469 -20455387 - B1_Mur4 SINE Alu -1 149 1 1 1358 1379 89 11 0 chr11 101388607 101388798 -20455058 - B2_Mm1a SINE B2 0 193 1 1 1358 966 113 179 0 chr11 101389022 101389173 -20454683 - B2_Mm2 SINE B2 -17 178 1 1 1358 300 111 0 0 chr11 101389577 101389631 -20454225 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1358 1351 82 16 0 chr11 101389687 101389871 -20453985 + B2_Mm1a SINE B2 2 188 -5 1 1358 972 249 48 42 chr11 101389897 101390186 -20453670 + Lx8 LINE L1 7000 7290 -183 1 1358 766 229 12 0 chr11 101390195 101390361 -20453495 + B2_Mm2 SINE B2 6 173 -22 1 1358 319 151 0 23 chr11 101390411 101390477 -20453379 + B2_Mm2 SINE B2 47 109 -107 1 1358 421 229 148 0 chr11 101390518 101390640 -20453216 + B1_Mur2 SINE Alu 2 141 -8 1 1358 1245 52 92 6 chr11 101390751 101390924 -20452932 + B2_Mm2 SINE B2 1 188 -7 1 1358 180 143 0 0 chr11 101390927 101390969 -20452887 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 1358 207 105 26 0 chr11 101391204 101391242 -20452614 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 1 1358 27 0 0 0 chr11 101391282 101391309 -20452547 + AT_rich Low_complexity Low_complexity 1 27 0 1 1358 405 274 154 7 chr11 101391550 101391686 -20452170 - RSINE1 SINE B4 -8 157 2 1 1358 249 196 0 0 chr11 101391779 101391830 -20452026 + (ATGGTG)n Simple_repeat Simple_repeat 4 54 0 1 1358 392 255 11 11 chr11 101391831 101391926 -20451930 - PB1D7 SINE Alu -8 112 18 1 1358 445 262 75 176 chr11 101392703 101392902 -20450954 + B3A SINE B2 11 194 -4 1 1358 382 141 28 0 chr11 101393604 101393675 -20450181 + PB1D9 SINE Alu 42 114 -6 1 1358 261 276 195 0 chr11 101393726 101393849 -20450007 - B1_Mm SINE Alu 0 147 1 1 1358 393 281 124 48 chr11 101393857 101394044 -20449812 - B3 SINE B2 -9 189 2 1 1358 633 162 120 23 chr11 101394211 101394344 -20449512 + B1_Mus1 SINE Alu 2 147 -1 1 1358 255 197 48 16 chr11 101394404 101394466 -20449390 + B4 SINE B4 3 66 -226 1 1358 252 243 222 9 chr11 101394996 101395104 -20448752 + B4 SINE B4 156 286 -6 1 1358 248 303 248 0 chr11 101395786 101395895 -20447961 + B4A SINE B4 82 217 -75 1 1358 22 35 0 0 chr11 101396089 101396118 -20447738 + AT_rich Low_complexity Low_complexity 1 29 0 1 1358 24 32 0 0 chr11 101396468 101396499 -20447357 + AT_rich Low_complexity Low_complexity 1 31 0 1 1358 453 231 141 0 chr11 101396516 101396637 -20447219 - RSINE1 SINE B4 -13 152 15 1 1358 327 164 0 0 chr11 101397309 101397370 -20446486 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1 1358 455 73 15 0 chr11 101397370 101397438 -20446418 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1358 756 164 8 15 chr11 101397551 101397681 -20446175 + B1_Mur3 SINE Alu 6 134 -15 1 1358 240 111 0 0 chr11 101397701 101397737 -20446119 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 1 1358 814 170 28 14 chr11 101397871 101398014 -20445842 - B1_Mus2 SINE Alu 0 147 3 1 1358 883 274 53 0 chr11 101398035 101398261 -20445595 - B4A SINE B4 -53 239 2 1 1358 234 264 149 0 chr11 101398600 101398687 -20445169 - MER5A1 DNA MER1_type -65 101 2 1 1358 745 239 27 38 chr11 101399068 101399251 -20444605 + B3A SINE B2 2 182 -16 1 1358 520 202 85 114 chr11 101399380 101399581 -20444275 + ORR1D1 LTR MaLR 180 374 0 1 1358 459 289 42 7 chr11 101399624 101399767 -20444089 + B1F2 SINE Alu 2 149 0 1 1358 292 259 141 0 chr11 101399980 101400065 -20443791 - MER2 DNA MER2_type 0 345 249 1 1358 1628 31 5 0 chr11 101400067 101400258 -20443598 + B2_Mm1t SINE B2 2 193 0 1 1358 737 181 0 0 chr11 101400304 101400431 -20443425 + B3A SINE B2 2 128 -70 1 1358 369 340 43 25 chr11 101400491 101400654 -20443202 - MER2 DNA MER2_type -173 172 7 1 1358 1233 48 0 0 chr11 101400945 101401091 -20442765 - B1_Mus2 SINE Alu 0 147 2 1 1358 915 194 68 5 chr11 101401465 101401672 -20442184 + URR1B DNA MER1_type 1 220 -5 1 1358 1176 62 14 0 chr11 101402361 101402506 -20441350 + B1_Mus1 SINE Alu 2 148 0 1 1358 204 40 0 0 chr11 101402506 101402531 -20441325 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1358 369 200 99 54 chr11 101402601 101402712 -20441144 + PB1D9 SINE Alu 5 120 0 1 1358 213 293 0 0 chr11 101402807 101402865 -20440991 + ID2 SINE ID 3 60 -23 1 1358 381 22 0 0 chr11 101402947 101402993 -20440863 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1358 302 306 51 0 chr11 101403004 101403102 -20440754 + ID_B1 SINE B4 88 190 -34 1 1358 582 277 15 78 chr11 101403144 101403348 -20440508 + B3A SINE B2 8 198 0 1 1358 1297 106 16 11 chr11 101403360 101403551 -20440305 - B2_Mm2 SINE B2 -3 192 1 1 1358 797 203 43 4 chr11 101403627 101403817 -20440039 - B3A SINE B2 -19 197 2 1 1358 306 333 52 7 chr11 101404057 101404211 -20439645 + Tigger7 DNA MER2_type 191 351 -2140 1 1358 186 43 0 0 chr11 101404212 101404235 -20439621 + (CACCC)n Simple_repeat Simple_repeat 1 23 0 1 1358 391 266 32 0 chr11 101404245 101404339 -20439517 - B1F1 SINE Alu -52 97 1 1 1358 336 197 15 0 chr11 101404339 101404402 -20439454 + Tigger7 DNA MER2_type 350 413 -2078 1 1358 344 228 0 137 chr11 101404395 101404512 -20439344 + Tigger7 DNA MER2_type 2365 2465 -26 1 1358 502 206 262 0 chr11 101404611 101404737 -20439119 - RSINE1 SINE B4 -4 161 3 1 1358 511 225 16 32 chr11 101406071 101406195 -20437661 + B1_Mur3 SINE Alu 13 134 -15 1 1358 335 344 24 8 chr11 101406320 101406443 -20437413 + PB1 SINE Alu 1 125 -2 1 1358 522 219 32 16 chr11 101406584 101406709 -20437147 - B1_Mur2 SINE Alu 0 149 23 1 1358 420 37 0 0 chr11 101406944 101406998 -20436858 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1358 551 202 53 0 chr11 101407081 101407195 -20436661 + PB1D9 SINE Alu 1 120 0 1 1358 211 261 21 4 chr11 101407217 101407276 -20436580 + PB1D10 SINE Alu 17 75 -42 1 1358 1158 48 65 0 chr11 101407382 101407550 -20436306 - B2_Mm1a SINE B2 -6 187 9 1 1358 360 186 0 95 chr11 101407529 101407545 -20436311 - B4A SINE B4 -126 166 120 1 1358 474 73 0 0 chr11 101407545 101407613 -20436243 - B1_Mus1 SINE Alu -79 69 2 1 1358 360 186 0 95 chr11 101407613 101407624 -20436232 - B4A SINE B4 -126 119 81 1 1358 332 254 83 25 chr11 101408104 101408301 -20435555 - B4A SINE B4 -3 289 1 1 1358 769 173 71 7 chr11 101408351 101408491 -20435365 + B1_Mur2 SINE Alu 1 149 0 1 1358 1237 82 15 76 chr11 101408576 101408773 -20435083 + B2_Mm1t SINE B2 1 185 -8 1 1358 682 246 14 0 chr11 101408803 101408941 -20434915 + B1_Mur1 SINE Alu 5 144 -5 1 1358 749 60 0 0 chr11 101408963 101409063 -20434793 + B2_Mm2 SINE B2 16 115 -80 1 1358 490 167 95 0 chr11 101409077 101409161 -20434695 - B3 SINE B2 -86 130 39 1 1358 374 272 147 22 chr11 101409317 101409501 -20434355 - ID_B1 SINE B4 -16 208 2 1 1358 272 303 59 29 chr11 101409580 101409682 -20434174 + L1ME2 LINE L1 6003 6107 -337 1 1358 274 229 105 75 chr11 101409689 101409822 -20434034 + B1F SINE Alu 1 149 0 1 1358 522 241 17 0 chr11 101410509 101410625 -20433231 - ID_B1 SINE B4 -1 223 106 1 1358 399 254 80 24 chr11 101410515 101410640 -20433216 - B1F SINE Alu -7 142 11 1 1358 406 292 66 0 chr11 101410648 101410785 -20433071 - B1F SINE Alu -3 146 1 1 1358 1039 151 55 11 chr11 101410876 101411057 -20432799 + B2_Mm2 SINE B2 1 189 -6 1 1358 1269 101 26 16 chr11 101411079 101411271 -20432585 + B2_Mm2 SINE B2 2 195 0 1 1358 1278 106 27 0 chr11 101411285 101411473 -20432383 + B2_Mm2 SINE B2 1 193 -2 1 1358 256 267 66 11 chr11 101411477 101411568 -20432288 + B3A SINE B2 1 96 -102 1 1358 887 153 7 14 chr11 101411632 101411778 -20432078 + B1_Mus1 SINE Alu 3 147 -1 1 1358 347 285 146 0 chr11 101412098 101412221 -20431635 + ID_B1 SINE B4 77 217 -7 1 1358 365 277 27 62 chr11 101412231 101412377 -20431479 + B1_Mur1 SINE Alu 1 141 -8 1 1358 693 84 0 0 chr11 101412388 101412483 -20431373 + B1_Mur3 SINE Alu 30 124 -25 1 1358 189 0 0 0 chr11 101412488 101412509 -20431347 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 1 1358 393 273 23 8 chr11 101415606 101415735 -20428121 - B3 SINE B2 -84 132 2 1 1358 283 260 0 13 chr11 101415770 101415848 -20428008 + PB1D9 SINE Alu 32 108 -12 1 1358 223 359 101 13 chr11 101416003 101416161 -20427695 - MIRc SINE MIR -60 208 37 1 1358 444 242 30 0 chr11 101417099 101417198 -20426658 - PB1 SINE Alu -12 115 14 1 1358 945 73 88 7 chr11 101418515 101418652 -20425204 - B1_Mus1 SINE Alu 0 148 1 1 1358 1485 59 37 0 chr11 101418661 101418848 -20425008 - B2_Mm2 SINE B2 0 195 2 1 1358 244 301 63 21 chr11 101418963 101419058 -20424798 - L1MC LINE L1 -1979 5903 5805 1 1358 432 0 0 0 chr11 101419222 101419270 -20424586 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1358 952 216 19 19 chr11 101419285 101419497 -20424359 + B3 SINE B2 1 212 -4 1 1358 234 367 0 0 chr11 101419591 101419670 -20424186 - ID4 SINE ID -3 80 2 1 1358 742 171 6 88 chr11 101419718 101419878 -20423978 + B1_Mur3 SINE Alu 3 149 0 1 1358 243 277 48 0 chr11 101419925 101420008 -20423848 - L1MC LINE L1 -709 5415 5329 1 1358 474 220 0 35 chr11 101420037 101420150 -20423706 - B1_Mur4 SINE Alu -20 130 22 1 1358 378 0 0 0 chr11 101420211 101420253 -20423603 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1358 248 302 0 0 chr11 101420350 101420413 -20423443 + ID SINE ID 21 83 -141 1 1358 353 250 0 0 chr11 101420425 101420509 -20423347 + B4A SINE B4 1 84 -208 1 1358 647 70 80 0 chr11 101421180 101421280 -20422576 + B1_Mur3 SINE Alu 40 147 -2 1 1358 224 333 43 9 chr11 101421465 101421582 -20422274 - MIRb SINE MIR -116 160 29 1 1358 387 236 6 15 chr11 101421810 101421913 -20421943 + PB1D10 SINE Alu 13 112 -5 1 1358 742 234 91 14 chr11 101422048 101422256 -20421600 - ID_B1 SINE B4 0 224 1 1 1358 454 212 147 32 chr11 101422692 101422882 -20420974 - RMER15 LTR ERVL -2 573 362 1 1358 21 36 0 0 chr11 101423187 101423215 -20420641 + AT_rich Low_complexity Low_complexity 1 28 0 1 1358 256 281 130 46 chr11 101423421 101423529 -20420327 + PB1D10 SINE Alu 1 117 0 1 1358 667 177 29 92 chr11 101423834 101424008 -20419848 + B2_Mm2 SINE B2 6 168 -27 1 1358 391 303 13 101 chr11 101424036 101424194 -20419662 + B1F SINE Alu 3 146 -3 1 1358 342 0 0 0 chr11 101424382 101424420 -20419436 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1358 1207 62 0 0 chr11 101424422 101424568 -20419288 - B1_Mus2 SINE Alu -1 146 1 1 1358 1201 61 0 0 chr11 101425340 101425487 -20418369 + B1_Mus2 SINE Alu 1 147 0 1 1358 912 148 90 6 chr11 101425502 101425679 -20418177 + B2_Mm1t SINE B2 2 193 0 1 1358 29 0 0 0 chr11 101425752 101425781 -20418075 + AT_rich Low_complexity Low_complexity 1 29 0 1 1358 816 53 0 18 chr11 101425781 101425895 -20417961 - B1_Mus1 SINE Alu 0 148 37 1 1358 272 189 0 19 chr11 101426248 101426302 -20417554 + B4 SINE B4 36 88 -204 1 1358 542 319 64 85 chr11 101426307 101426602 -20417254 + B4 SINE B4 4 292 0 1 1358 525 272 146 49 chr11 101426590 101426795 -20417061 + B4 SINE B4 67 291 -1 1 1358 230 0 33 0 chr11 101426890 101426920 -20416936 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 1 1358 1664 21 11 0 chr11 101428102 101428292 -20415564 + B2_Mm1a SINE B2 2 193 0 1 1358 1408 45 79 0 chr11 101428661 101428821 -20415035 + B2_Mm1a SINE B2 1 160 -33 1 1358 207 0 0 0 chr11 101428821 101428844 -20415012 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1358 1408 45 79 0 chr11 101428844 101428861 -20414995 + B2_Mm1a SINE B2 161 190 -3 1 1358 791 204 155 5 chr11 101428881 101429068 -20414788 + B3 SINE B2 2 216 0 1 1358 660 157 83 0 chr11 101429094 101429215 -20414641 + B1_Mur3 SINE Alu 19 149 0 1 1358 1388 84 15 20 chr11 101429441 101429636 -20414220 + B2_Mm2 SINE B2 2 195 0 1 1358 222 37 0 0 chr11 101430286 101430313 -20413543 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1358 312 304 9 26 chr11 101430330 101430445 -20413411 - RSINE1 SINE B4 -50 115 3 1 1358 231 322 18 50 chr11 101431156 101431255 -20412601 + PB1D10 SINE Alu 2 99 -21 1 1358 597 92 0 0 chr11 101431645 101431743 -20412113 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1 1358 745 148 55 0 chr11 101431743 101431871 -20411985 - B1_Mus1 SINE Alu -7 141 7 1 1358 1229 29 0 0 chr11 101432052 101432192 -20411664 + B1_Mm SINE Alu 3 142 -5 1 1358 392 183 153 44 chr11 101432357 101432494 -20411362 + L1MC4a LINE L1 7728 7879 -3 1 1358 325 250 54 11 chr11 101434777 101434870 -20408986 + PB1D9 SINE Alu 19 115 -5 1 1358 1207 48 7 0 chr11 101435085 101435231 -20408625 + B1_Mus2 SINE Alu 1 147 0 1 1358 687 266 142 8 chr11 101435253 101435499 -20408357 + B4A SINE B4 2 280 -12 1 1358 1299 105 10 20 chr11 101435835 101436030 -20407826 - B2_Mm1t SINE B2 0 193 1 1 1358 1407 87 16 0 chr11 101437022 101437206 -20406650 + B2_Mm2 SINE B2 2 188 -7 1 1358 978 38 106 0 chr11 101437879 101438011 -20405845 - B1_Mus2 SINE Alu 0 147 2 1 1358 506 226 58 10 chr11 101439776 101439879 -20403977 + PB1D10 SINE Alu 2 109 -8 1 1358 407 205 167 25 chr11 101440125 101440245 -20403611 - B1_Mm SINE Alu -1 146 10 1 1358 527 171 136 16 chr11 101440354 101440479 -20403377 + RSINE1 SINE B4 18 157 -8 1 1358 1168 61 0 13 chr11 101440494 101440643 -20403213 + B1_Mus2 SINE Alu 1 147 0 1 1358 255 399 7 0 chr11 101440734 101440872 -20402984 - L2 LINE L2 -1001 2418 2280 1 1358 329 162 101 14 chr11 101441224 101441293 -20402563 + PB1D9 SINE Alu 2 76 -44 1 1358 198 0 0 0 chr11 101444228 101444250 -20399606 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1358 1112 44 0 0 chr11 101444250 101444386 -20399470 - B1_Mus2 SINE Alu 0 147 12 1 1358 418 216 15 121 chr11 101444285 101444417 -20399439 - MT2B LTR ERVL -337 264 147 1 1358 1240 54 0 0 chr11 101445330 101445477 -20398379 + B1_Mm SINE Alu 1 147 0 1 1358 291 54 0 0 chr11 101445718 101445755 -20398101 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1358 398 195 25 49 chr11 101446003 101446084 -20397772 + ID4 SINE ID 3 81 -2 1 1358 521 239 9 27 chr11 101446540 101446612 -20397244 + RSINE1 SINE B4 11 83 -82 1 1358 3608 13 2 0 chr11 101446612 101447007 -20396849 - MTA_Mm LTR MaLR 0 396 1 1 1358 521 239 9 27 chr11 101447007 101447046 -20396810 + RSINE1 SINE B4 84 120 -45 1 1358 183 244 44 0 chr11 101447379 101447424 -20396432 - MIR SINE MIR -139 69 23 1 1358 715 215 214 6 chr11 101447963 101448136 -20395720 + B3 SINE B2 2 210 -6 1 1358 910 150 0 35 chr11 101448171 101448316 -20395540 + B1_Mur4 SINE Alu 2 141 -9 1 1358 243 0 0 0 chr11 101448316 101448343 -20395513 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1358 372 294 71 27 chr11 101448358 101448470 -20395386 - PB1 SINE Alu -6 121 5 1 1358 3257 152 192 37 chr11 101448623 101448829 -20395027 + RMER19B LTR ERVK 24 237 -665 1 1358 1083 60 15 0 chr11 101448829 101448962 -20394894 + B1_Mm SINE Alu 1 135 -12 1 1358 612 40 0 0 chr11 101448962 101449037 -20394819 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1358 3257 152 192 37 chr11 101449037 101449567 -20394289 + RMER19B LTR ERVK 238 873 -29 1 169 1288 117 0 11 chr11 101449567 101449757 -20394099 + B2_Mm2 SINE B2 2 189 -6 1 1359 1262 41 0 0 chr11 101449763 101449910 -20393946 + B1_Mus2 SINE Alu 1 147 0 1 1359 1170 91 25 65 chr11 101449930 101450131 -20393725 + B2_Mm2 SINE B2 2 194 -1 1 1359 432 323 52 30 chr11 101450516 101450650 -20393206 + RSINE1 SINE B4 25 161 -4 1 1359 1070 103 7 0 chr11 101450655 101450801 -20393055 - B1_Mus1 SINE Alu 0 148 2 1 1359 373 200 283 22 chr11 101453271 101453363 -20390493 - PB1D9 SINE Alu -3 117 2 1 1359 235 339 0 0 chr11 101453310 101453375 -20390481 - B4A SINE B4 -153 139 75 1 1359 284 310 11 33 chr11 101453387 101453477 -20390379 - B4A SINE B4 -138 154 67 1 1359 1285 21 7 0 chr11 101453509 101453654 -20390202 + B1_Mm SINE Alu 1 146 -1 1 1359 2046 173 10 58 chr11 101453671 101454070 -20389786 - MTB_Mm LTR MaLR -27 380 1 1 1359 302 314 11 23 chr11 101454070 101454146 -20389710 - B4 SINE B4 -213 79 5 1 1359 216 0 0 0 chr11 101455300 101455324 -20388532 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1359 504 288 20 20 chr11 101455524 101455673 -20388183 + B1F SINE Alu 1 149 0 1 1359 669 211 49 7 chr11 101455695 101455838 -20388018 + B1_Mur4 SINE Alu 2 150 0 1 1359 500 273 18 0 chr11 101455852 101455962 -20387894 + B3A SINE B2 65 176 -22 1 1359 23 33 0 0 chr11 101455971 101456001 -20387855 + AT_rich Low_complexity Low_complexity 1 30 0 1 1359 393 229 13 19 chr11 101456016 101456108 -20387748 + ID4 SINE ID 6 93 -59 1 1359 190 73 49 0 chr11 101457052 101457093 -20386763 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 1 1359 526 205 53 18 chr11 101457221 101457335 -20386521 + B3A SINE B2 1 118 -80 1 1359 345 333 0 0 chr11 101457362 101457443 -20386413 + B1F2 SINE Alu 3 83 -66 1 1359 414 256 0 23 chr11 101457435 101457523 -20386333 - B3 SINE B2 -130 86 1 1 1359 565 236 6 146 chr11 101457657 101457821 -20386035 + B3A SINE B2 2 142 -56 1 1359 285 109 0 0 chr11 101457836 101457882 -20385974 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1359 795 225 106 11 chr11 101457894 101458083 -20385773 + B3 SINE B2 1 207 -9 1 1359 589 269 37 0 chr11 101458101 101458235 -20385621 + B1_Mur1 SINE Alu 4 142 -7 1 1359 1242 41 0 7 chr11 101458262 101458409 -20385447 + B1_Mus2 SINE Alu 2 147 0 1 1359 194 0 0 37 chr11 101458409 101458436 -20385420 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1 1359 1325 92 12 0 chr11 101458452 101458625 -20385231 + B2_Mm1t SINE B2 5 179 -14 1 1359 283 133 364 110 chr11 101458672 101458702 -20385154 + B2_Mm2 SINE B2 47 71 -124 1 1359 5837 86 71 24 chr11 101458702 101459564 -20384292 + RMER17A2 LTR ERVK 5 906 0 1 1359 283 133 364 110 chr11 101459564 101459651 -20384205 + B2_Mm2 SINE B2 72 194 -1 1 1359 315 33 23 0 chr11 101459668 101459714 -20384142 + B2_Mm2 SINE B2 2 53 -163 1 1359 243 86 16 65 chr11 101459796 101459858 -20383998 + A-rich Low_complexity Low_complexity 2 60 0 1 1359 259 215 419 0 chr11 101459869 101459962 -20383894 + B1F2 SINE Alu 2 133 -16 1 1359 203 295 63 13 chr11 101461189 101461268 -20382588 + MIRb SINE MIR 17 99 -169 1 1359 1179 56 14 0 chr11 101461277 101461420 -20382436 - B1_Mur4 SINE Alu -1 149 5 1 1359 1492 107 107 0 chr11 101461753 101461995 -20381861 + RMER1B Other Other 583 850 -216 1 1359 659 108 49 8 chr11 101462173 101462295 -20381561 + RMER1B Other Other 938 1064 -2 1 1359 438 316 23 11 chr11 101462355 101462531 -20381325 + (CATG)n Simple_repeat Simple_repeat 3 180 0 1 1359 862 169 7 45 chr11 101462639 101462794 -20381062 + B1_Mur4 SINE Alu 1 149 -1 1 1359 729 274 12 25 chr11 101462860 101463021 -20380835 + RSINE1 SINE B4 3 161 -4 1 1359 532 250 50 8 chr11 101463074 101463088 -20380768 - B3 SINE B2 0 216 202 1 1359 816 110 147 16 chr11 101463088 101463217 -20380639 - B1_Mus1 SINE Alu -1 147 2 1 1359 532 250 50 8 chr11 101463217 101463323 -20380533 - B3 SINE B2 -15 201 91 1 1359 871 136 0 0 chr11 101463375 101463500 -20380356 - B2_Mm2 SINE B2 -70 125 1 1 1359 556 240 0 28 chr11 101463501 101463608 -20380248 - B3 SINE B2 -112 104 1 1 1359 335 279 0 25 chr11 101463795 101463876 -20379980 - B4A SINE B4 -211 81 3 1 1359 235 338 67 37 chr11 101464073 101464208 -20379648 - MIR3 SINE MIR -36 172 34 1 1359 193 255 21 0 chr11 101464258 101464305 -20379551 - MIRc SINE MIR -198 70 23 1 1359 215 152 0 0 chr11 101464404 101464437 -20379419 - B3A SINE B2 -165 33 1 1 1359 1016 119 6 32 chr11 101464521 101464677 -20379179 - B2_Mm2 SINE B2 -43 152 1 1 1359 222 118 0 0 chr11 101464749 101464783 -20379073 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1359 315 0 0 0 chr11 101464783 101464817 -20379039 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1359 546 186 52 17 chr11 101464894 101465009 -20378847 + PB1D9 SINE Alu 1 119 -1 1 1359 479 240 24 101 chr11 101465022 101465109 -20378747 + B1F SINE Alu 1 89 -60 1 1359 2342 131 32 21 chr11 101465109 101465483 -20378373 + RLTR14 LTR ERV1 3 380 -2 1 1359 479 256 20 97 chr11 101465483 101465533 -20378323 + B1F SINE Alu 85 127 -21 1 1359 271 256 11 68 chr11 101465596 101465613 -20378243 + MT2B2 LTR ERVL 152 163 -421 1 1359 270 288 73 46 chr11 101465613 101465722 -20378134 + PB1D10 SINE Alu 2 113 -4 1 1359 1640 32 0 0 chr11 101466163 101466350 -20377506 + U2 snRNA snRNA 1 187 -1 1 1359 962 27 0 0 chr11 101466432 101466544 -20377312 - B2_Mm1t SINE B2 -80 113 2 1 1359 385 129 500 33 chr11 101466556 101466676 -20377180 - B2_Mm2 SINE B2 -19 176 1 1 1359 886 149 50 0 chr11 101466726 101466867 -20376989 - B1_Mus1 SINE Alu 0 148 1 1 1359 25 0 0 0 chr11 101466869 101466894 -20376962 + AT_rich Low_complexity Low_complexity 1 25 0 1 1359 1652 31 0 10 chr11 101466909 101467102 -20376754 + B2_Mm1a SINE B2 2 192 -1 1 1359 294 29 0 0 chr11 101467154 101467189 -20376667 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1359 1042 53 53 0 chr11 101467194 101467326 -20376530 - B1_Mus2 SINE Alu -7 140 2 1 1359 701 172 105 39 chr11 101467514 101467695 -20376161 - B2_Mm2 SINE B2 0 195 3 1 1359 675 93 0 0 chr11 101467727 101467813 -20376043 - B1_Mus1 SINE Alu -62 86 1 1 1359 8568 73 32 46 chr11 101467816 101468467 -20375389 - Lx3A LINE L1 -1 6980 6347 1 1359 861 49 194 8 chr11 101468467 101468591 -20375265 - B1_Mus2 SINE Alu 0 147 1 1 1359 8568 73 32 46 chr11 101468591 101468911 -20374945 - Lx3A LINE L1 -635 6346 6037 1 1359 180 0 0 0 chr11 101468911 101468931 -20374925 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1359 8568 73 32 46 chr11 101468931 101469288 -20374568 - Lx3A LINE L1 -945 6036 5669 1 1359 613 97 254 0 chr11 101469280 101469402 -20374454 + Lx4B LINE L1 5530 5679 -1379 1 1359 802 149 7 36 chr11 101469443 101469582 -20374274 + B1_Mur3 SINE Alu 1 135 -14 1 1359 28 0 0 0 chr11 101469900 101469928 -20373928 + AT_rich Low_complexity Low_complexity 1 28 0 1 1359 1035 124 0 7 chr11 101470560 101470706 -20373150 + B1_Mus1 SINE Alu 2 146 -2 1 1359 264 59 0 0 chr11 101470712 101470746 -20373110 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 1 1359 1309 86 6 17 chr11 101470773 101470951 -20372905 + B2_Mm1t SINE B2 2 177 -16 1 1359 423 0 0 0 chr11 101470951 101470998 -20372858 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 1 1359 619 203 79 24 chr11 101471148 101471274 -20372582 - B1_Mur2 SINE Alu -10 139 7 1 1359 318 258 15 0 chr11 101471215 101471281 -20372575 - B4 SINE B4 -142 150 84 1 1359 491 320 44 17 chr11 101471348 101471529 -20372327 - B4A SINE B4 -64 228 43 1 1359 295 125 62 0 chr11 101471553 101471601 -20372255 + PB1D10 SINE Alu 52 102 -15 1 1359 288 317 19 19 chr11 101471771 101471877 -20371979 + GA-rich Low_complexity Low_complexity 2 107 0 1 1359 327 243 37 55 chr11 101472356 101472465 -20371391 + B3A SINE B2 1 107 -91 1 1359 364 250 0 83 chr11 101472614 101472627 -20371229 + MT2B LTR ERVL 154 158 -443 1 1359 587 138 3 0 chr11 101472627 101472727 -20371129 + B1_Mus1 SINE Alu 3 103 -46 1 1359 709 11 22 0 chr11 101473122 101473212 -20370644 + (TTTTG)n Simple_repeat Simple_repeat 4 95 0 1 1359 1160 52 0 0 chr11 101473212 101473346 -20370510 - B1_Mus1 SINE Alu -12 136 3 1 1359 754 62 10 0 chr11 101473462 101473559 -20370297 - B2_Mm1t SINE B2 -55 138 41 1 1359 302 159 0 14 chr11 101473590 101473660 -20370196 + CT-rich Low_complexity Low_complexity 2 70 0 1 1359 1181 68 7 0 chr11 101473663 101473809 -20370047 - B1_Mus2 SINE Alu 0 147 1 1 1359 396 224 0 0 chr11 101473939 101474037 -20369819 + CT-rich Low_complexity Low_complexity 3 100 0 1 1359 1192 49 7 0 chr11 101474050 101474194 -20369662 - B1_Mus1 SINE Alu -2 146 2 1 1359 1353 95 26 0 chr11 101474200 101474389 -20369467 - B2_Mm2 SINE B2 0 195 2 1 1359 750 114 0 0 chr11 101474544 101474649 -20369207 - B2_Mm2 SINE B2 -89 106 2 1 1359 687 258 156 101 chr11 101475672 101476167 -20367689 - MLT1F1 LTR MaLR -44 525 4 1 1359 497 333 167 45 chr11 101476189 101476699 -20367157 - MER21B LTR ERV1 -21 842 271 1 1359 188 67 0 32 chr11 101477817 101477848 -20366008 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1 1359 1197 101 0 12 chr11 101477969 101478140 -20365716 - B2_Mm2 SINE B2 -19 176 8 1 1359 401 262 106 15 chr11 101478308 101478440 -20365416 + RSINE1 SINE B4 3 146 -19 1 1359 489 276 13 44 chr11 101478721 101478838 -20365018 + U2 snRNA snRNA 7 118 -70 1 1359 630 190 7 28 chr11 101478838 101478979 -20364877 + RMER17C LTR ERVK 1 138 -272 1 1359 1274 183 163 20 chr11 101478996 101479175 -20364681 - RMER17C LTR ERVK -3 407 214 1 1359 477 0 0 0 chr11 101479175 101479228 -20364628 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1359 1274 183 163 20 chr11 101479228 101479404 -20364452 - RMER17C LTR ERVK -197 213 3 1 1359 610 198 16 16 chr11 101479845 101479968 -20363888 - B3A SINE B2 -75 123 1 1 1359 848 146 73 0 chr11 101480101 101480238 -20363618 + B1_Mus1 SINE Alu 2 148 0 1 1359 610 102 40 30 chr11 101480338 101480439 -20363417 + B2_Mm1t SINE B2 2 103 -90 1 1359 351 0 0 0 chr11 101480459 101480498 -20363358 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1359 1231 75 6 0 chr11 101480498 101480657 -20363199 - B2_Mm1a SINE B2 -33 160 1 1 1359 1201 55 7 0 chr11 101480750 101480895 -20362961 - B1_Mus2 SINE Alu 0 147 2 1 1359 623 248 0 20 chr11 101481016 101481164 -20362692 - B1_Mur1 SINE Alu 0 149 5 1 1359 3617 47 205 0 chr11 101481229 101481697 -20362159 - LTRIS2 LTR ERV1 0 564 1 1 1359 1188 68 0 20 chr11 101481865 101482015 -20361841 - B1_Mus1 SINE Alu 0 148 2 1 1359 1700 181 79 13 chr11 101482056 101482374 -20361482 - RMER17A2 LTR ERVK 0 906 568 1 1359 1344 44 66 6 chr11 101482374 101482555 -20361301 + B2_Mm1a SINE B2 2 193 0 1 1359 1128 65 0 13 chr11 101482558 101482715 -20361141 + B2_Mm1a SINE B2 35 189 -4 1 1359 1046 66 59 0 chr11 101482725 101482861 -20360995 + B1_Mus2 SINE Alu 1 144 -3 1 1359 3059 96 122 6 chr11 101482895 101483410 -20360446 - RMER17A2 LTR ERVK -331 575 1 1 1359 1727 150 67 22 chr11 101483414 101483749 -20360107 - RLTR12A LTR ERVK -184 384 1 1 1359 332 238 77 29 chr11 101483876 101483980 -20359876 + PB1D10 SINE Alu 1 109 -8 1 1359 357 239 42 0 chr11 101483998 101484084 -20359772 + ID4_ SINE ID 6 94 -58 1 1359 205 280 0 0 chr11 101484342 101484392 -20359464 + L2 LINE L2 2647 2696 -723 1 1359 1910 178 72 22 chr11 101484530 101484960 -20358896 - RMER16 LTR ERVK 0 533 1 1 1359 1391 148 30 49 chr11 101485066 101485148 -20358708 - RLTR23 LTR ERV1 0 430 349 1 1359 4232 44 22 2 chr11 101485148 101485650 -20358206 - RLTR1B LTR ERV1 0 512 1 1 1359 1391 148 30 49 chr11 101485650 101485823 -20358033 - RLTR23 LTR ERV1 -82 348 180 1 1359 2375 107 0 0 chr11 101485823 101486132 -20357724 + RLTR27 LTR ERVK 1 309 0 1 1359 2373 129 59 21 chr11 101486144 101486531 -20357325 - RLTR9D LTR ERVK -1 402 1 1 1359 463 118 43 86 chr11 101486531 101486608 -20357248 - RLTR23 LTR ERV1 -259 171 99 1 1359 503 74 222 0 chr11 101486655 101486736 -20357120 - RLTR23 LTR ERV1 -331 99 1 1 1359 476 296 167 16 chr11 101486743 101487000 -20356856 - RMER15 LTR ERVL -3 572 277 1 1359 226 125 31 0 chr11 101487049 101487097 -20356759 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 1 1359 1243 54 0 0 chr11 101487097 101487244 -20356612 - B1_Mus2 SINE Alu 0 147 1 1 1359 226 125 31 0 chr11 101487244 101487259 -20356597 + (TTTG)n Simple_repeat Simple_repeat 1 16 0 1 1359 1021 52 82 0 chr11 101487259 101487394 -20356462 - B1_Mus2 SINE Alu 0 147 2 1 1359 180 0 0 0 chr11 101487454 101487474 -20356382 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1359 1208 43 0 0 chr11 101487475 101487616 -20356240 - B1_Mus2 SINE Alu -6 141 1 1 1359 279 240 113 113 chr11 101487662 101487695 -20356161 - B2_Mm1a SINE B2 -4 189 160 1 1359 204 40 0 0 chr11 101487695 101487720 -20356136 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1359 399 240 113 112 chr11 101487720 101487828 -20356028 - B3 SINE B2 -34 159 48 1 1359 1656 27 0 0 chr11 101488679 101488866 -20354990 + U2 snRNA snRNA 1 187 -1 1 1359 552 139 0 0 chr11 101489021 101489100 -20354756 + B2_Mm2 SINE B2 2 80 -115 1 1359 21 71 0 0 chr11 101489990 101490032 -20353824 + AT_rich Low_complexity Low_complexity 1 42 0 1 1359 1628 26 21 0 chr11 101490313 101490502 -20353354 - B2_Mm1a SINE B2 0 193 1 1 1359 605 166 184 25 chr11 101490847 101490983 -20352873 + B3 SINE B2 2 162 -36 1 1359 1182 49 0 27 chr11 101490983 101491131 -20352725 + B1_Mus1 SINE Alu 5 148 0 1 1359 711 164 16 8 chr11 101491214 101491337 -20352519 + RLTR12A LTR ERVK 335 458 -110 1 1359 640 289 23 11 chr11 101491336 101491511 -20352345 - ID_B1 SINE B4 -29 195 19 1 1359 189 0 0 0 chr11 101492015 101492036 -20351820 + (CTGGGG)n Simple_repeat Simple_repeat 5 25 0 1 1359 180 97 0 0 chr11 101492331 101492362 -20351494 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1359 314 248 113 24 chr11 101492649 101492773 -20351083 + B3A SINE B2 2 136 -62 1 1359 790 54 170 0 chr11 101492802 101492914 -20350942 - B1_Mus1 SINE Alu 0 148 18 1 1359 365 183 233 108 chr11 101492807 101492936 -20350920 - B4 SINE B4 -71 221 77 1 1359 1040 84 0 7 chr11 101493574 101493718 -20350138 - B1_Mus1 SINE Alu 0 148 6 1 1359 236 284 0 47 chr11 101493615 101493763 -20350093 - ORR1B1-int LTR MaLR -755 754 614 1 1359 2606 212 201 27 chr11 101493765 101494063 -20349793 - RMER1A Other Other -34 996 636 1 1359 1196 61 0 7 chr11 101494063 101494211 -20349645 + B1_Mm SINE Alu 1 147 0 1 1359 2606 212 201 27 chr11 101494211 101494684 -20349172 - RMER1A Other Other -395 635 91 1 1359 479 296 86 11 chr11 101494770 101494944 -20348912 - B4A SINE B4 -6 286 100 1 1359 448 32 3 20 chr11 101494971 101495040 -20348816 + B1_Mm SINE Alu 76 146 -4 1 1359 842 85 77 0 chr11 101495295 101495425 -20348431 + B1_Mus2 SINE Alu 8 147 0 1 1359 234 0 0 0 chr11 101495519 101495545 -20348311 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 1359 1241 41 7 0 chr11 101495643 101495788 -20348068 - B1_Mus1 SINE Alu -1 147 2 1 1359 559 172 213 0 chr11 101495799 101495921 -20347935 - B1F2 SINE Alu 0 149 2 1 1359 800 185 15 32 chr11 101496298 101496493 -20347363 + B3 SINE B2 2 189 -4 1 1359 444 226 164 25 chr11 101496623 101496782 -20347074 - B3A SINE B2 -17 181 1 1 1359 540 45 0 0 chr11 101497596 101497663 -20346193 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1359 574 172 308 71 chr11 101498100 101498139 -20345717 + B3 SINE B2 2 39 -177 1 1359 1385 75 32 0 chr11 101498139 101498325 -20345531 + B2_Mm1t SINE B2 2 193 0 1 1359 574 172 308 71 chr11 101498325 101498454 -20345402 + B3 SINE B2 40 210 -6 1 1359 573 264 42 24 chr11 101498503 101498670 -20345186 - B3A SINE B2 -24 174 5 1 1359 238 218 18 18 chr11 101498723 101498779 -20345077 - B1_Mus1 SINE Alu -92 56 1 1 1359 864 190 32 16 chr11 101499320 101499507 -20344349 - RMER5 LTR ERV1 -1 533 344 1 1359 703 199 15 7 chr11 101499515 101499652 -20344204 - B1_Mur3 SINE Alu -6 143 6 1 1359 1318 256 23 17 chr11 101499652 101499998 -20343858 - RMER5 LTR ERV1 -174 360 13 1 1359 931 158 200 0 chr11 101500113 101500278 -20343578 + B3 SINE B2 3 200 -16 1 1359 28 0 0 0 chr11 101500283 101500311 -20343545 + AT_rich Low_complexity Low_complexity 1 28 0 2 1359 882 125 16 0 chr11 101500404 101500532 -20343324 + B1_Mus1 SINE Alu 6 135 -13 3 1359 309 26 0 0 chr11 101500533 101500571 -20343285 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1359 321 301 28 37 chr11 101500895 101501002 -20342854 - B1F SINE Alu -25 124 19 5 1359 272 169 33 33 chr11 101501036 101501097 -20342759 + RLTR25A LTR ERVK 512 572 -531 6 1359 798 50 0 0 chr11 101501044 101501145 -20342711 + B1_Mm SINE Alu 46 146 -1 7 1359 2464 161 130 14 chr11 101501171 101501657 -20342199 + RMER15 LTR ERVL 34 575 0 8 1359 1042 147 66 66 chr11 101501683 101501909 -20341947 + URR1A DNA MER1_type 1 226 0 9 1359 1083 88 0 26 chr11 101502043 101502195 -20341661 - B1_Mus1 SINE Alu 0 148 1 1 1359 27 0 0 0 chr11 101502196 101502223 -20341633 + AT_rich Low_complexity Low_complexity 1 27 0 1 1359 512 259 13 52 chr11 101502223 101502378 -20341478 - B1_Mur4 SINE Alu -1 149 1 1 1359 217 241 10 135 chr11 101502400 101502496 -20341360 + PB1D7 SINE Alu 30 113 -7 1 1359 1656 27 0 0 chr11 101503061 101503248 -20340608 + U2 snRNA snRNA 1 187 -1 1 1359 401 104 312 0 chr11 101503535 101503612 -20340244 + B1_Mus1 SINE Alu 1 101 -47 1 1359 283 183 266 46 chr11 101503612 101503638 -20340218 + MT2B LTR ERVL 179 290 -311 1 1359 1029 74 96 0 chr11 101503945 101504080 -20339776 - B1_Mus1 SINE Alu 0 148 1 1 1359 34 24 0 0 chr11 101504080 101504121 -20339735 + AT_rich Low_complexity Low_complexity 1 41 0 1 1359 398 105 96 1 chr11 101504336 101504405 -20339451 - B1_Mus2 SINE Alu -43 74 1 1 1359 453 19 0 0 chr11 101504539 101504593 -20339263 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1359 532 238 16 8 chr11 101504839 101504966 -20338890 + B1_Mur4 SINE Alu 20 147 -3 2 1359 313 206 152 87 chr11 101505081 101505219 -20338637 + B1_Mus2 SINE Alu 1 147 0 2 1359 356 221 0 123 chr11 101505229 101505302 -20338554 + L1M2 LINE L1 4442 4503 -1380 2 1359 1643 42 0 0 chr11 101505302 101505495 -20338361 + B2_Mm1t SINE B2 1 193 0 2 1359 497 238 76 90 chr11 101505495 101505665 -20338191 + L1M2 LINE L1 4504 4707 -1436 2 1359 1383 66 33 0 chr11 101505665 101505847 -20338009 + B2_Mm1t SINE B2 2 189 -4 2 1359 497 265 154 55 chr11 101505847 101506241 -20337615 + L1M2 LINE L1 4677 5128 -752 2 1359 1497 59 0 11 chr11 101506248 101506437 -20337419 + B2_Mm1a SINE B2 1 187 -6 2 1359 330 112 128 0 chr11 101506691 101506766 -20337090 - B1_Mm SINE Alu -47 101 3 2 1359 1656 27 0 0 chr11 101507057 101507244 -20336612 - U2 snRNA snRNA -1 187 1 2 1359 221 244 10 131 chr11 101507811 101507910 -20335946 - PB1D7 SINE Alu -7 113 27 2 1359 349 266 21 31 chr11 101507911 101508008 -20335848 - B1_Mur2 SINE Alu 0 149 54 3 1359 402 53 3 0 chr11 101508028 101508083 -20335773 + B1_Mm SINE Alu 53 138 -9 3 1359 203 167 0 0 chr11 101508126 101508168 -20335688 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 1359 831 57 0 0 chr11 101508168 101508274 -20335582 - B1_Mm SINE Alu 0 147 42 3 1359 357 184 53 0 chr11 101508211 101508287 -20335569 - RLTR25B LTR ERVK -519 509 430 3 1359 1198 49 0 0 chr11 101508369 101508511 -20335345 + B1_Mus2 SINE Alu 1 142 -5 3 1359 1583 43 0 16 chr11 101508664 101508855 -20335001 + B2_Mm1a SINE B2 2 189 -4 3 1359 28 0 0 0 chr11 101508862 101508890 -20334966 + AT_rich Low_complexity Low_complexity 1 28 0 3 1359 186 43 0 0 chr11 101508954 101508977 -20334879 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1359 258 116 0 0 chr11 101508977 101509020 -20334836 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1359 623 273 60 25 chr11 101509257 101509456 -20334400 + MTC LTR MaLR 4 209 -210 4 1359 702 158 102 0 chr11 101509457 101509584 -20334272 + B1_Mur3 SINE Alu 2 141 -8 4 1359 760 267 26 16 chr11 101509627 101509821 -20334035 + MTC LTR MaLR 204 399 -22 4 1359 2075 139 3 6 chr11 101509821 101510133 -20333723 + RLTR10E LTR ERVK 1 311 0 4 1359 7430 146 42 42 chr11 101510134 101511626 -20332230 + MMERVK10C-int LTR ERVK 1 1491 -6090 4 1359 339 148 0 0 chr11 101511615 101511676 -20332180 + MMERVK10C-int LTR ERVK 1879 1939 -5642 4 1359 238 201 54 20 chr11 101511689 101511836 -20332020 + (TATAA)n Simple_repeat Simple_repeat 1 152 0 4 1359 19555 71 0 4 chr11 101511836 101514397 -20329459 + MMERVK10C-int LTR ERVK 4453 7002 -579 4 1359 1211 154 10 15 chr11 101514397 101514601 -20329255 + RLTRETN_Mm LTR ERVK 120 322 0 4 1359 1926 140 43 15 chr11 101514615 101514942 -20328914 + MTB_Mm LTR MaLR 4 339 -68 4 1359 499 184 7 126 chr11 101515112 101515134 -20328722 + MT2B LTR ERVL 146 150 -451 4 1359 846 113 24 0 chr11 101515134 101515258 -20328598 + B1_Mur1 SINE Alu 2 128 -21 4 1359 468 0 0 0 chr11 101515258 101515310 -20328546 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1359 891 42 185 0 chr11 101515312 101515431 -20328425 - B1_Mus1 SINE Alu -6 142 2 4 1359 386 250 0 75 chr11 101515478 101515612 -20328244 + RMER17C-int LTR ERVK 2849 2972 -266 5 1359 232 362 11 11 chr11 101516155 101516250 -20327606 + RMER10B LTR ERVL 247 341 -57 5 1359 1174 62 7 7 chr11 101516265 101516411 -20327445 - B1_Mm SINE Alu -1 146 1 5 1359 500 296 73 88 chr11 101516460 101516790 -20327066 - RMER10A LTR ERVL -13 429 105 5 1359 235 282 70 84 chr11 101517052 101517195 -20326661 + RMER15 LTR ERVL 13 153 -422 5 1359 700 181 29 29 chr11 101517294 101517431 -20326425 - B1_Mus2 SINE Alu -1 146 10 5 1359 690 147 189 49 chr11 101517463 101517627 -20326229 + B2_Mm2 SINE B2 1 187 -8 5 1359 807 75 190 8 chr11 101517638 101517759 -20326097 + B1_Mus2 SINE Alu 1 143 -4 5 1359 2584 123 96 56 chr11 101517998 101518228 -20325628 - RLTR28 LTR ERVL -6 518 250 5 1359 1198 56 21 0 chr11 101518228 101518372 -20325484 - B1_Mm SINE Alu 0 147 1 5 1359 2584 123 96 56 chr11 101518372 101518639 -20325217 - RLTR28 LTR ERVL -275 249 1 5 1359 269 316 123 47 chr11 101518718 101518954 -20324902 + RMER15 LTR ERVL 319 572 -3 5 1359 363 266 68 3 chr11 101519090 101519202 -20324654 + PB1D7 SINE Alu 1 119 -1 6 1359 1656 27 0 0 chr11 101519551 101519738 -20324118 + U2 snRNA snRNA 1 187 -1 6 1359 862 88 0 0 chr11 101519963 101520076 -20323780 - B1_Mus1 SINE Alu -34 114 2 6 1359 388 240 81 52 chr11 101520076 101520109 -20323747 - B4A SINE B4 -201 91 55 6 1359 1232 29 0 0 chr11 101520420 101520560 -20323296 - B1_Mm SINE Alu -7 140 1 6 1359 280 265 146 49 chr11 101520617 101520706 -20323150 - B1F SINE Alu -6 143 37 6 1359 1055 66 151 0 chr11 101520706 101520872 -20322984 - B2_Mm1a SINE B2 -2 191 1 6 1359 280 265 146 49 chr11 101520872 101520905 -20322951 - B1F SINE Alu -113 36 9 6 1359 575 67 0 0 chr11 101520951 101521026 -20322830 + B1_Mur4 SINE Alu 76 150 0 6 1359 236 278 115 31 chr11 101521176 101521306 -20322550 + B1F2 SINE Alu 4 144 -5 6 1359 1085 200 48 10 chr11 101521563 101521770 -20322086 + B3 SINE B2 2 216 0 6 1359 1348 80 40 0 chr11 101521852 101522028 -20321828 + B2_Mm2 SINE B2 2 184 -11 7 1359 876 174 118 11 chr11 101522056 101522242 -20321614 - B3 SINE B2 0 216 11 7 1359 318 220 336 8 chr11 101522280 101522399 -20321457 - RSINE1 SINE B4 -4 161 4 7 1359 1103 36 72 7 chr11 101522803 101522941 -20320915 + B1_Mus2 SINE Alu 1 147 0 7 1359 320 74 19 0 chr11 101522952 101522978 -20320878 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 1359 315 0 0 0 chr11 101522978 101523013 -20320843 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1359 320 74 19 0 chr11 101523013 101523040 -20320816 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 1359 182 253 0 132 chr11 101523350 101523441 -20320415 + MIRc SINE MIR 40 118 -150 7 1359 180 0 0 0 chr11 101523490 101523510 -20320346 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1359 230 311 58 51 chr11 101523612 101523768 -20320088 + YREP_Mm Unknown Unknown 150 306 -1506 7 1359 594 252 7 30 chr11 101523637 101523772 -20320084 - ID_B1 SINE B4 -3 221 90 8 1359 230 289 46 130 chr11 101523780 101523808 -20320048 - PB1D9 SINE Alu 0 120 1 8 1359 279 283 214 39 chr11 101523808 101523911 -20319945 - B4 SINE B4 -86 206 86 8 1359 261 213 49 127 chr11 101523873 101524003 -20319853 + RLTR25B LTR ERVK 435 572 -531 8 1359 679 118 10 19 chr11 101523941 101524045 -20319811 + B1_Mus2 SINE Alu 45 147 0 8 1359 219 242 0 31 chr11 101524047 101524069 -20319787 + A-rich Low_complexity Low_complexity 1 22 0 8 1359 1243 56 76 38 chr11 101524069 101524253 -20319603 + B2_Mm2 SINE B2 1 191 -4 8 1359 786 102 16 25 chr11 101524253 101524373 -20319483 + PB1D9 SINE Alu 1 120 0 8 1359 219 242 0 31 chr11 101524373 101524413 -20319443 + A-rich Low_complexity Low_complexity 23 61 0 8 1359 254 261 46 0 chr11 101525158 101525223 -20318633 - ID4 SINE ID -6 77 10 8 1359 423 291 35 8 chr11 101525235 101525377 -20318479 - B1F SINE Alu -1 148 1 9 1359 205 311 171 36 chr11 101525504 101525644 -20318212 + MIRb SINE MIR 28 186 -82 9 1359 293 281 0 68 chr11 101525670 101525758 -20318098 + PB1D7 SINE Alu 39 120 0 9 1359 703 210 0 112 chr11 101525769 101525810 -20318046 + B1_Mur2 SINE Alu 1 31 -118 9 1359 925 115 65 0 chr11 101525810 101525949 -20317907 - B1_Mus1 SINE Alu 0 148 1 9 1359 703 210 0 112 chr11 101525949 101526068 -20317788 + B1_Mur2 SINE Alu 32 143 -6 9 1359 746 238 14 0 chr11 101526092 101526235 -20317621 + B3A SINE B2 6 150 -48 9 1359 772 132 54 27 chr11 101526248 101526396 -20317460 + B2_Mm2 SINE B2 14 165 -30 9 1359 22 0 0 0 chr11 101527367 101527389 -20316467 + AT_rich Low_complexity Low_complexity 1 22 0 9 1359 341 260 260 0 chr11 101527414 101527537 -20316319 + RSINE1 SINE B4 11 165 0 9 1359 1148 41 7 0 chr11 101527594 101527739 -20316117 - B1_Mus1 SINE Alu 0 148 3 9 1359 324 0 0 0 chr11 101529900 101529936 -20313920 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1359 212 0 0 35 chr11 101530197 101530226 -20313630 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 1 1359 438 53 0 0 chr11 101530347 101530404 -20313452 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1359 245 275 70 44 chr11 101531599 101531713 -20312143 - MIR3 SINE MIR -85 123 7 1 1359 577 197 99 25 chr11 101531916 101532077 -20311779 - RMER30 DNA MER1_type -29 173 1 1 1359 285 234 31 0 chr11 101532063 101532127 -20311729 + B1F2 SINE Alu 2 67 -82 1 1359 266 194 97 31 chr11 101532420 101532500 -20311356 + PB1D7 SINE Alu 12 94 -33 1 1359 824 137 49 28 chr11 101532603 101532746 -20311110 + B1_Mus2 SINE Alu 2 147 0 1 1359 433 351 74 26 chr11 101532747 101533057 -20310799 - L1ME4a LINE L1 -50 6074 5750 1 1359 209 109 22 0 chr11 101533095 101533141 -20310715 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1359 381 325 59 8 chr11 101533192 101533310 -20310546 + RSINE1 SINE B4 10 133 -32 1 1359 1118 68 0 69 chr11 101533383 101533542 -20310314 + B1_Mus1 SINE Alu 1 148 0 1 1359 564 177 186 39 chr11 101533602 101533731 -20310125 + B1_Mur1 SINE Alu 2 149 0 1 1359 784 158 13 33 chr11 101533765 101533916 -20309940 - B1_Mur3 SINE Alu -1 148 1 1 1359 374 221 156 0 chr11 101533924 101534001 -20309855 + B1_Mur2 SINE Alu 7 95 -54 1 1359 230 0 0 32 chr11 101534003 101534034 -20309822 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1359 1294 56 0 0 chr11 101534034 101534194 -20309662 - B2_Mm1t SINE B2 -33 160 1 1 1359 216 0 0 0 chr11 101535043 101535067 -20308789 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1359 305 315 77 58 chr11 101535077 101535232 -20308624 - B3A SINE B2 -2 214 57 1 1359 271 167 74 0 chr11 101535305 101535359 -20308497 - PB1D9 SINE Alu -8 112 55 1 1359 2591 121 37 22 chr11 101535465 101535872 -20307984 + MTC LTR MaLR 1 413 -8 1 1359 485 236 130 30 chr11 101535926 101536057 -20307799 - ID_B1 SINE B4 0 224 81 1 1359 274 240 78 26 chr11 101536165 101536242 -20307614 - ID4_ SINE ID -2 81 1 1 1359 1074 23 61 0 chr11 101536286 101536418 -20307438 + B1_Mur4 SINE Alu 1 140 -10 1 1359 352 253 29 69 chr11 101536973 101537075 -20306781 + RSINE1 SINE B4 3 100 -65 1 1359 442 0 35 0 chr11 101537076 101537134 -20306722 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1359 1328 85 11 0 chr11 101537196 101537373 -20306483 + B2_Mm1a SINE B2 1 179 -14 1 1359 499 193 12 0 chr11 101537393 101537476 -20306380 + B3 SINE B2 12 95 -121 1 1359 1344 92 32 0 chr11 101537565 101537750 -20306106 - B2_Mm1a SINE B2 -2 191 1 1 1359 1083 128 0 0 chr11 101537753 101537902 -20305954 - B1_Mur4 SINE Alu -1 149 1 1 1359 30 59 0 0 chr11 101537925 101537976 -20305880 + AT_rich Low_complexity Low_complexity 1 51 0 1 1359 517 270 73 0 chr11 101537977 101538114 -20305742 - B1_Mur1 SINE Alu -1 148 2 1 1359 311 283 0 108 chr11 101538157 101538186 -20305670 - PB1D10 SINE Alu -1 116 18 1 1359 330 256 73 0 chr11 101538186 101538268 -20305588 - ID_B1 SINE B4 -38 186 99 1 1359 292 253 38 0 chr11 101538316 101538395 -20305461 - ID4 SINE ID 0 83 2 1 1359 280 273 65 0 chr11 101538435 101538512 -20305344 + ID2 SINE ID 2 83 0 1 1359 260 335 166 11 chr11 101538618 101538799 -20305057 + L3b LINE CR1 193 401 -81 1 1359 213 65 0 0 chr11 101538865 101538896 -20304960 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1359 864 143 35 35 chr11 101538902 101539047 -20304809 - B1_Mur2 SINE Alu 0 149 5 1 1359 452 62 37 12 chr11 101539409 101539491 -20304365 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1359 1365 68 5 31 chr11 101539585 101539781 -20304075 - B2_Mm1t SINE B2 -2 191 1 1 1359 246 373 73 42 chr11 101539889 101540054 -20303802 + B3A SINE B2 29 198 0 1 1359 254 234 147 105 chr11 101540214 101540357 -20303499 - LTR16A1 LTR ERVL -55 401 253 1 1359 417 327 0 0 chr11 101540379 101540480 -20303376 + PB1D7 SINE Alu 13 113 -7 1 1359 441 307 36 0 chr11 101540506 101540643 -20303213 + ID_B1 SINE B4 80 221 -3 1 1359 543 251 29 7 chr11 101540668 101540805 -20303051 + ID_B1 SINE B4 78 213 -11 1 1359 213 208 0 0 chr11 101541587 101541659 -20302197 + G-rich Low_complexity Low_complexity 1 72 0 1 1359 426 53 0 0 chr11 101541890 101541947 -20301909 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1359 273 305 114 0 chr11 101542726 101542831 -20301025 - B1_Mus1 SINE Alu -31 117 1 1 1359 286 286 123 9 chr11 101542865 101542971 -20300885 - PB1D7 SINE Alu -2 118 1 1 1359 685 217 75 19 chr11 101542971 101543042 -20300814 - ID SINE ID -144 80 1 1 1359 201 74 0 0 chr11 101543050 101543077 -20300779 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1 1359 237 65 0 0 chr11 101543258 101543289 -20300567 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1359 292 128 0 0 chr11 101543302 101543341 -20300515 - B1_Mus2 SINE Alu -99 48 10 1 1359 225 0 0 0 chr11 101543357 101543382 -20300474 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1 1359 468 156 51 20 chr11 101543382 101543480 -20300376 - B1_Mur1 SINE Alu -13 136 36 1 1359 243 229 70 14 chr11 101543435 101543506 -20300350 - RLTR25B LTR ERVK -545 483 409 1 1359 497 135 11 0 chr11 101543507 101543596 -20300260 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 1 1359 1475 68 10 5 chr11 101543611 101543803 -20300053 + B2_Mm1a SINE B2 1 193 0 1 1359 294 213 66 0 chr11 101544333 101544394 -20299462 + RSINE1 SINE B4 3 67 -98 1 1359 345 62 0 0 chr11 101544465 101544513 -20299343 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1359 756 198 0 0 chr11 101544587 101544708 -20299148 - B1_Mur1 SINE Alu -5 144 24 1 1359 440 292 13 59 chr11 101544727 101544880 -20298976 - RSINE1 SINE B4 0 165 20 1 1359 324 48 0 0 chr11 101545564 101545606 -20298250 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1359 319 335 21 4 chr11 101545820 101545969 -20297887 - B3A SINE B2 -29 187 34 1 1359 1036 149 0 0 chr11 101546099 101546247 -20297609 + B1_Mur4 SINE Alu 3 150 0 1 1359 183 42 0 0 chr11 101546346 101546370 -20297486 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 1 1359 261 250 0 175 chr11 101546559 101546612 -20297244 - B3 SINE B2 -135 81 40 1 1359 743 83 0 9 chr11 101546612 101546721 -20297135 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 1 1359 1225 49 0 0 chr11 101546722 101546865 -20296991 - B1_Mus1 SINE Alu -4 144 2 1 1359 261 250 0 175 chr11 101546865 101546906 -20296950 - B3 SINE B2 -177 39 2 1 1359 228 35 0 0 chr11 101546911 101546940 -20296916 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1359 929 144 14 0 chr11 101547170 101547316 -20296540 - B1_Mur4 SINE Alu -1 149 2 1 1359 22 35 0 0 chr11 101547316 101547345 -20296511 + AT_rich Low_complexity Low_complexity 1 29 0 1 1359 343 311 9 45 chr11 101547356 101547467 -20296389 + PB1D10 SINE Alu 2 108 -9 1 1359 387 0 0 0 chr11 101547468 101547511 -20296345 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1359 476 231 48 0 chr11 101547515 101547619 -20296237 + B1_Mur2 SINE Alu 23 131 -18 1 1359 252 0 0 0 chr11 101547619 101547647 -20296209 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1359 1066 120 71 6 chr11 101547734 101547902 -20295954 + B2_Mm1t SINE B2 1 179 -14 1 1359 297 218 0 0 chr11 101547933 101547988 -20295868 + B2_Mm2 SINE B2 47 101 -94 1 1359 216 0 0 0 chr11 101548013 101548037 -20295819 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1359 288 266 116 116 chr11 101548305 101548556 -20295300 + L2c LINE L2 3133 3383 -4 1 1359 272 148 46 38 chr11 101549079 101549148 -20294708 - B1F1 SINE Alu -27 90 14 1 1359 892 122 35 28 chr11 101549698 101549842 -20294014 + B1_Mur1 SINE Alu 5 149 0 1 1359 1525 58 16 0 chr11 101549964 101550153 -20293703 + B2_Mm2 SINE B2 1 192 -3 1 1359 290 154 95 71 chr11 101550179 101550191 -20293665 - B4 SINE B4 -206 86 1 1 1359 603 28 0 0 chr11 101550191 101550263 -20293593 - B2_Mm2 SINE B2 -123 72 1 1 1359 334 282 40 106 chr11 101550263 101550416 -20293440 + B3 SINE B2 72 211 -5 1 1359 26 0 0 0 chr11 101550416 101550442 -20293414 + AT_rich Low_complexity Low_complexity 1 26 0 1 1359 1111 102 0 0 chr11 101550453 101550600 -20293256 + B1_Mus1 SINE Alu 1 147 -1 1 1359 222 37 0 0 chr11 101550666 101550693 -20293163 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1 1359 579 223 71 7 chr11 101551935 101552075 -20291781 - B1_Mur2 SINE Alu 0 149 1 1 1359 1841 148 13 7 chr11 101552715 101553021 -20290835 + RMER17C-int LTR ERVK 2931 3238 0 1 1359 1957 112 67 52 chr11 101553021 101553425 -20290431 + RMER17C LTR ERVK 1 410 0 1 1359 221 319 14 0 chr11 101553514 101553583 -20290273 + L2c LINE L2 3102 3171 -216 1 1359 205 316 0 0 chr11 101553613 101553670 -20290186 - MER5B DNA MER1_type 0 178 122 1 1359 347 207 180 22 chr11 101553681 101553770 -20290086 + PB1D10 SINE Alu 5 107 -10 1 1359 911 231 0 118 chr11 101553818 101554064 -20289792 - ID_B1 SINE B4 -6 218 2 1 1359 625 287 0 47 chr11 101554194 101554344 -20289512 + RSINE1 SINE B4 2 144 -21 1 1359 1252 41 0 0 chr11 101554908 101555055 -20288801 - B1_Mm SINE Alu 0 147 1 1 1359 375 299 56 72 chr11 101555103 101555120 -20288736 - B2_Mm2 SINE B2 -2 193 177 1 1359 264 59 0 0 chr11 101555120 101555154 -20288702 + (CAT)n Simple_repeat Simple_repeat 1 34 0 1 1359 618 261 16 21 chr11 101555154 101555316 -20288540 - B3 SINE B2 -19 176 17 1 1359 267 127 17 83 chr11 101555347 101555407 -20288449 + B3 SINE B2 161 216 0 1 1359 453 286 0 153 chr11 101555467 101555624 -20288232 - B3A SINE B2 -43 155 23 2 1359 396 0 0 0 chr11 101555679 101555723 -20288133 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 1359 938 44 0 0 chr11 101555723 101555837 -20288019 - B1_Mm SINE Alu -2 145 32 2 1359 339 279 21 41 chr11 101555766 101555863 -20287993 - MT2B LTR ERVL -344 257 163 2 1359 366 199 194 0 chr11 101555873 101555959 -20287897 - B1F SINE Alu -35 114 13 2 1359 477 226 0 47 chr11 101555989 101556096 -20287760 - B1_Mus2 SINE Alu 0 147 46 2 1359 305 253 91 26 chr11 101556038 101556115 -20287741 - MT2B LTR ERVL -343 258 177 2 1359 275 0 0 28 chr11 101556121 101556157 -20287699 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1359 1004 57 86 0 chr11 101556157 101556297 -20287559 - B2_Mm2 SINE B2 -42 153 2 2 1359 249 211 0 0 chr11 101556422 101556479 -20287377 + (CATA)n Simple_repeat Simple_repeat 3 59 0 2 1359 792 241 62 36 chr11 101556494 101556688 -20287168 - B3 SINE B2 -14 202 4 2 1359 410 270 52 88 chr11 101556688 101556937 -20286919 - B4A SINE B4 -60 232 1 2 1359 365 224 42 22 chr11 101558093 101558231 -20285625 - PB1D10 SINE Alu -1 148 3 2 1359 785 156 35 14 chr11 101558311 101558454 -20285402 - B1_Mur2 SINE Alu -2 147 2 2 1359 468 293 43 0 chr11 101558455 101558571 -20285285 - RSINE1 SINE B4 -44 121 1 2 1359 246 268 38 76 chr11 101558577 101558682 -20285174 - PB1D10 SINE Alu -8 109 9 2 1359 530 272 40 71 chr11 101558733 101558931 -20284925 + RMER10B LTR ERVL 197 388 -10 2 1359 313 354 74 37 chr11 101558967 101559184 -20284672 + L1M5 LINE L1 5506 5730 -394 2 1359 793 238 85 0 chr11 101559296 101559485 -20284371 + ID_B1 SINE B4 2 206 -18 2 1359 695 254 75 32 chr11 101559500 101559708 -20284148 + B3A SINE B2 1 212 -4 2 1359 811 213 41 70 chr11 101559712 101559945 -20283911 + B3 SINE B2 1 206 -10 2 1359 586 121 111 0 chr11 101559998 101560097 -20283759 + B1_Mur4 SINE Alu 36 145 -5 2 1359 216 0 0 0 chr11 101560108 101560132 -20283724 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 2 1359 208 129 0 0 chr11 101560135 101560166 -20283690 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2 1359 285 29 0 0 chr11 101560303 101560337 -20283519 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1359 222 150 0 0 chr11 101560655 101560695 -20283161 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1359 590 142 30 156 chr11 101561183 101561350 -20282506 + B1_Mus1 SINE Alu 2 147 -1 2 1359 541 258 25 0 chr11 101561414 101561534 -20282322 - RSINE1 SINE B4 -40 125 3 2 1359 522 263 7 15 chr11 101561536 101561671 -20282185 - B1F1 SINE Alu -6 143 10 2 1359 213 326 56 106 chr11 101561671 101561696 -20282160 - B4 SINE B4 -71 220 69 2 1359 272 336 86 0 chr11 101562134 101562250 -20281606 + MER5B DNA MER1_type 9 134 -44 2 1359 486 256 0 17 chr11 101562367 101562486 -20281370 - PB1D10 SINE Alu 0 117 1 2 1359 693 245 0 0 chr11 101562705 101562844 -20281012 - RSINE1 SINE B4 -25 140 2 2 1359 227 278 46 3 chr11 101562875 101562954 -20280902 + AluF_3 SINE Alu 146 211 -100 2 1359 397 226 22 3 chr11 101562981 101563097 -20280759 - L1MB5 LINE L1 -206 5968 5852 2 1359 727 147 116 0 chr11 101563102 101563231 -20280625 + B1_Mur2 SINE Alu 1 144 -5 2 1359 330 169 0 0 chr11 101563231 101563296 -20280560 + GA-rich Low_complexity Low_complexity 1 65 0 2 1359 677 185 75 50 chr11 101563305 101563504 -20280352 - L1MB5 LINE L1 -328 5846 5643 2 1359 525 32 0 0 chr11 101563657 101563720 -20280136 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2 1359 1389 86 27 0 chr11 101563737 101563923 -20279933 + B2_Mm1t SINE B2 2 192 -1 2 1359 344 240 200 0 chr11 101563933 101564033 -20279823 + PB1D9 SINE Alu 1 120 0 2 1359 1206 48 0 7 chr11 101564117 101564265 -20279591 - B1_Mus2 SINE Alu 0 147 1 2 1359 1471 74 16 0 chr11 101564266 101564456 -20279400 - B2_Mm2 SINE B2 -1 194 2 2 1359 860 159 0 40 chr11 101564499 101564650 -20279206 - B1_Mur4 SINE Alu 0 150 6 2 1359 438 202 171 9 chr11 101565027 101565132 -20278724 - B1_Mur1 SINE Alu -2 147 26 2 1359 270 0 0 0 chr11 101566424 101566454 -20277402 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1359 353 299 30 59 chr11 101566454 101566589 -20277267 - B1_Mm SINE Alu -2 145 15 2 1359 800 261 26 16 chr11 101566489 101566680 -20277176 - ID_B1 SINE B4 -29 195 3 2 1359 23 0 0 0 chr11 101566690 101566713 -20277143 + AT_rich Low_complexity Low_complexity 1 23 0 2 1359 1262 41 0 0 chr11 101566713 101566859 -20276997 - B1_Mus2 SINE Alu 0 147 2 2 1359 250 214 54 0 chr11 101566973 101567029 -20276827 + L2a LINE L2 3368 3426 0 2 1359 517 269 43 141 chr11 101567207 101567441 -20276415 + B3 SINE B2 1 211 -5 2 1359 427 184 0 26 chr11 101567444 101567522 -20276334 - B1_Mur3 SINE Alu -4 145 70 2 1359 827 171 7 14 chr11 101567562 101567710 -20276146 + B1_Mus1 SINE Alu 1 147 -1 2 1359 1227 169 22 27 chr11 101567743 101567968 -20275888 - URR1B DNA MER1_type 0 225 2 2 1359 280 352 53 57 chr11 101568527 101568730 -20275126 + MIR SINE MIR 25 234 -34 2 1359 37 23 0 0 chr11 101568747 101568791 -20275065 + AT_rich Low_complexity Low_complexity 1 44 0 2 1359 1174 42 7 27 chr11 101568801 101568949 -20274907 - B1_Mus1 SINE Alu -2 146 2 2 1359 582 250 7 28 chr11 101568950 101569094 -20274762 - B1F SINE Alu 0 149 9 2 1359 745 248 79 6 chr11 101569150 101569358 -20274498 - B4A SINE B4 0 292 56 2 1359 304 324 57 14 chr11 101569408 101569549 -20274307 - B1F SINE Alu 0 149 3 2 1359 237 229 21 0 chr11 101569694 101569742 -20274114 - B3A SINE B2 -16 182 134 2 1359 344 219 46 111 chr11 101570212 101570320 -20273536 + RSINE1 SINE B4 3 103 -62 2 1359 908 260 22 89 chr11 101570348 101570661 -20273195 + B4A SINE B4 1 292 0 2 1359 338 221 27 71 chr11 101570728 101570840 -20273016 + PB1D10 SINE Alu 4 110 -7 2 1359 963 122 14 0 chr11 101571062 101571201 -20272655 + B1_Mur3 SINE Alu 2 142 -7 2 1359 293 267 0 0 chr11 101571392 101571467 -20272389 + ID4 SINE ID 3 77 -6 2 1359 368 255 32 0 chr11 101571670 101571764 -20272092 + PB1D7 SINE Alu 1 97 -23 2 1359 276 208 0 19 chr11 101571792 101571846 -20272010 + B3A SINE B2 1 53 -145 2 1359 186 43 0 0 chr11 101571847 101571870 -20271986 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1359 1442 69 37 0 chr11 101571930 101572118 -20271738 + B2_Mm2 SINE B2 1 195 0 2 1359 1055 128 7 0 chr11 101572395 101572543 -20271313 - B1_Mur4 SINE Alu 0 150 2 2 1359 1288 27 0 0 chr11 101572665 101572811 -20271045 + B1_Mm SINE Alu 2 147 0 2 1359 1029 233 0 0 chr11 101572848 101573041 -20270815 - B3 SINE B2 -22 194 2 2 1359 529 280 88 0 chr11 101573152 101573277 -20270579 - ID_B1 SINE B4 -7 217 82 2 1359 466 262 103 0 chr11 101573493 101573619 -20270237 - B1F SINE Alu -1 148 10 2 1359 204 40 0 0 chr11 101573641 101573666 -20270190 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 2 1359 719 204 15 0 chr11 101573672 101573804 -20270052 + B1_Mus1 SINE Alu 2 135 -13 2 1359 1477 63 11 0 chr11 101573812 101574002 -20269854 - B2_Mm1t SINE B2 0 193 2 2 1359 246 62 0 0 chr11 101574016 101574048 -20269808 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1359 377 239 154 90 chr11 101574104 101574260 -20269596 + B3A SINE B2 1 166 -32 2 1359 412 285 39 32 chr11 101574283 101574439 -20269417 - RSINE1 SINE B4 -6 159 3 2 1359 547 202 10 0 chr11 101574441 101574540 -20269316 - MIRb SINE MIR -115 153 54 2 1359 352 299 37 18 chr11 101574569 101574678 -20269178 + MER81 DNA AcHobo 3 113 -1 2 1359 849 233 17 9 chr11 101575708 101575923 -20267933 + B3A SINE B2 1 213 -3 2 1359 1089 53 38 0 chr11 101576077 101576210 -20267646 + B1_Mm SINE Alu 1 138 -9 2 1359 817 166 18 21 chr11 101576226 101576387 -20267469 + B3 SINE B2 9 168 -27 2 1359 1494 63 11 0 chr11 101576387 101576577 -20267279 + B2_Mm1a SINE B2 1 192 -1 2 1359 643 215 65 75 chr11 101576577 101576601 -20267255 + B2_Mm2 SINE B2 169 192 -3 2 1359 199 157 39 0 chr11 101576664 101576715 -20267141 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1359 279 128 0 0 chr11 101576715 101576762 -20267094 + B1_Mur4 SINE Alu 102 148 -2 2 1359 306 300 37 30 chr11 101576925 101577059 -20266797 - L1MB3 LINE L1 -62 6121 5987 2 1359 250 241 17 69 chr11 101577411 101577469 -20266387 - ID4_ SINE ID -8 75 21 2 1359 303 140 0 0 chr11 101577486 101577536 -20266320 + (TCC)n Simple_repeat Simple_repeat 1 50 0 2 1359 537 240 0 0 chr11 101577536 101577636 -20266220 - PB1D10 SINE Alu -8 109 10 2 1359 339 226 0 0 chr11 101577729 101577791 -20266065 - ID_B1 SINE B4 0 224 163 2 1359 929 239 33 9 chr11 101577916 101578127 -20265729 + B3 SINE B2 1 216 0 2 1359 461 228 340 6 chr11 101578166 101578325 -20265531 + ID_B1 SINE B4 12 223 -1 2 1359 1067 82 133 17 chr11 101578329 101578502 -20265354 + B2_Mm2 SINE B2 1 193 -2 2 1359 688 259 20 0 chr11 101578528 101578675 -20265181 + RSINE1 SINE B4 3 152 -13 2 1359 1592 285 138 56 chr11 101578730 101578997 -20264859 + MER54B LTR ERVL 119 426 -367 2 1359 1143 65 0 0 chr11 101578997 101579136 -20264720 - B1_Mus1 SINE Alu -9 139 1 2 1359 1592 285 138 56 chr11 101579136 101579492 -20264364 + MER54B LTR ERVL 427 793 0 2 1359 1375 80 26 11 chr11 101580109 101580269 -20263587 + B2_Mm1a SINE B2 1 160 -33 3 1359 312 27 0 0 chr11 101580269 101580306 -20263550 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1359 1375 80 26 11 chr11 101580306 101580335 -20263521 + B2_Mm1a SINE B2 161 193 0 3 1359 450 143 0 0 chr11 101580356 101580433 -20263423 + (GGGGA)n Simple_repeat Simple_repeat 4 80 0 3 1359 332 257 14 0 chr11 101580443 101580517 -20263339 + ID4_ SINE ID 4 78 -5 3 1359 474 287 32 16 chr11 101580519 101580643 -20263213 + B4 SINE B4 128 253 -39 3 1359 195 69 0 0 chr11 101580658 101580687 -20263169 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1359 240 265 0 58 chr11 101580688 101580792 -20263064 + (CAGA)n Simple_repeat Simple_repeat 2 99 0 3 1360 450 301 8 180 chr11 101580839 101581028 -20262828 - ID_B1 SINE B4 -3 221 73 3 1360 225 0 0 0 chr11 101581028 101581053 -20262803 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1360 450 301 8 180 chr11 101581053 101581102 -20262754 - ID SINE ID -152 72 24 3 1360 252 286 0 54 chr11 101581860 101581934 -20261922 - ID4_ SINE ID 0 83 14 3 1360 1244 18 6 18 chr11 101582132 101582298 -20261558 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 3 1360 603 202 105 0 chr11 101582298 101582422 -20261434 - B1_Mur3 SINE Alu -12 137 1 3 1360 333 145 182 18 chr11 101582441 101582553 -20261303 - B2_Mm2 SINE B2 0 195 47 3 1360 1201 125 11 6 chr11 101582566 101582743 -20261113 - B2_Mm1t SINE B2 -14 179 2 3 1360 1215 109 33 5 chr11 101582777 101582961 -20260895 + B2_Mm2 SINE B2 4 192 -3 3 1360 567 239 0 66 chr11 101582961 101583112 -20260744 + B1F2 SINE Alu 1 142 -7 3 1360 396 268 121 85 chr11 101583120 101583402 -20260454 + B4 SINE B4 1 292 0 3 1360 310 136 86 14 chr11 101583490 101583790 -20260066 + (TA)n Simple_repeat Simple_repeat 1 321 0 3 1360 411 284 75 18 chr11 101583795 101583966 -20259890 - B3 SINE B2 -18 175 1 3 1360 208 219 40 40 chr11 101583989 101584089 -20259767 + (TTATA)n Simple_repeat Simple_repeat 1 100 0 3 1360 872 216 33 16 chr11 101584090 101584274 -20259582 + B3 SINE B2 26 212 -4 3 1360 22 0 0 0 chr11 101584337 101584359 -20259497 + AT_rich Low_complexity Low_complexity 1 22 0 3 1360 1201 89 83 6 chr11 101584362 101584543 -20259313 - B2_Mm2 SINE B2 0 195 1 3 1360 364 202 189 11 chr11 101584545 101584640 -20259216 - B1_Mur1 SINE Alu -1 148 37 3 1360 298 212 59 29 chr11 101584594 101584662 -20259194 - MT2B LTR ERVL -362 239 170 3 1360 510 252 7 73 chr11 101584651 101584801 -20259055 - RSINE1 SINE B4 -23 142 3 3 1360 560 262 54 0 chr11 101584961 101585110 -20258746 - RSINE1 SINE B4 -7 158 2 3 1360 1568 125 194 4 chr11 101585138 101585411 -20258445 - ORR1A2 LTR MaLR -2 325 1 3 1360 274 330 39 78 chr11 101585755 101585857 -20257999 + PB1 SINE Alu 5 102 -25 3 1360 321 26 0 0 chr11 101586102 101586140 -20257716 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 1360 1086 95 0 26 chr11 101586152 101586304 -20257552 + B1_Mus1 SINE Alu 1 148 0 3 1360 210 158 0 0 chr11 101586907 101586945 -20256911 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1360 431 0 37 0 chr11 101587071 101587125 -20256731 + (TATG)n Simple_repeat Simple_repeat 3 58 0 3 1360 1378 80 15 36 chr11 101587279 101587474 -20256382 - B2_Mm2 SINE B2 -4 191 1 3 1360 946 145 35 0 chr11 101587478 101587490 -20256366 - B1_Mur4 SINE Alu 0 150 139 3 1360 219 69 0 0 chr11 101587490 101587519 -20256337 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 3 1360 946 145 35 0 chr11 101587519 101587651 -20256205 - B1_Mur4 SINE Alu -12 138 2 3 1360 250 227 119 15 chr11 101587662 101587729 -20256127 - B4A SINE B4 -206 86 13 3 1360 183 282 60 52 chr11 101587837 101587953 -20255903 - L3 LINE CR1 -3414 1075 959 3 1360 256 268 28 14 chr11 101588507 101588579 -20255277 + ID4_ SINE ID 11 83 0 3 1360 216 0 0 0 chr11 101588864 101588888 -20254968 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1360 315 230 35 115 chr11 101589128 101589241 -20254615 - ID_B1 SINE B4 0 224 121 3 1360 588 264 21 82 chr11 101589194 101589303 -20254553 + ID_B1 SINE B4 42 145 -79 3 1360 418 196 98 45 chr11 101589303 101589415 -20254441 - PB1D9 SINE Alu -1 119 2 3 1360 588 264 21 82 chr11 101589415 101589499 -20254357 + ID_B1 SINE B4 146 223 -1 3 1360 387 198 111 0 chr11 101589520 101589601 -20254255 - ID_B1 SINE B4 -48 176 87 3 1360 1370 81 32 0 chr11 101589628 101589814 -20254042 - B2_Mm2 SINE B2 -2 193 2 3 1360 396 0 0 0 chr11 101589869 101589913 -20253943 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1360 203 327 10 19 chr11 101590152 101590255 -20253601 + CT-rich Low_complexity Low_complexity 1 102 0 3 1360 545 181 0 95 chr11 101590379 101590495 -20253361 - PB1D9 SINE Alu -1 119 15 3 1360 533 148 63 94 chr11 101591419 101591444 -20252412 - B3A SINE B2 -73 125 111 3 1360 1386 94 0 20 chr11 101591444 101591640 -20252216 + B2_Mm2 SINE B2 1 192 -3 3 1360 533 148 63 94 chr11 101591640 101591741 -20252115 - B3A SINE B2 -88 110 3 3 1360 332 224 90 20 chr11 101591793 101591893 -20251963 - RSINE1 SINE B4 -2 163 57 3 1360 672 104 0 0 chr11 101591956 101592052 -20251804 - B1_Mus2 SINE Alu -9 138 43 3 1360 563 275 51 70 chr11 101592052 101592073 -20251783 - ID_B1 SINE B4 -9 215 101 3 1360 1233 160 39 5 chr11 101592073 101592280 -20251576 - B3 SINE B2 -1 215 2 3 1360 563 275 51 70 chr11 101592280 101592377 -20251479 - ID_B1 SINE B4 -124 100 5 3 1360 311 222 165 79 chr11 101592548 101592675 -20251181 - B1F SINE Alu 0 149 12 3 1360 692 248 0 0 chr11 101592688 101592817 -20251039 - B1_Mur2 SINE Alu -20 129 1 3 1360 239 246 47 116 chr11 101592817 101592847 -20251009 + YREP_Mm Unknown Unknown 321 341 -1471 3 1360 483 18 0 0 chr11 101593035 101593091 -20250765 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 3 1360 846 174 227 0 chr11 101593098 101593270 -20250586 + B3 SINE B2 5 215 -1 3 1360 456 254 18 0 chr11 101593374 101593484 -20250372 - PB1D9 SINE Alu -8 112 1 3 1360 246 95 0 0 chr11 101594572 101594614 -20249242 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1360 246 298 0 127 chr11 101595261 101595288 -20248568 + MT2B2 LTR ERVL 97 224 -357 3 1360 445 214 33 25 chr11 101595288 101595340 -20248516 + B4 SINE B4 32 84 -208 3 1360 575 28 0 0 chr11 101595340 101595411 -20248445 + B1_Mus1 SINE Alu 1 71 -77 3 1360 1419 54 16 21 chr11 101595853 101596041 -20247815 - B2_Mm2 SINE B2 -8 187 1 3 1360 1138 75 0 7 chr11 101596084 101596231 -20247625 + B1_Mus1 SINE Alu 1 146 -2 3 1360 1112 145 124 5 chr11 101596328 101596529 -20247327 - URR1B DNA MER1_type 0 225 1 3 1360 1410 60 54 0 chr11 101597337 101597522 -20246334 + B2_Mm2 SINE B2 1 195 0 3 1360 595 231 72 36 chr11 101597611 101597750 -20246106 + B1_Mur2 SINE Alu 7 150 0 3 1360 2750 142 89 18 chr11 101597771 101598265 -20245591 - RLTR24 LTR ERV1 0 529 1 3 1360 704 284 109 18 chr11 101598413 101598642 -20245214 - MER2 DNA MER2_type 0 345 96 3 1360 636 162 0 26 chr11 101598780 101598894 -20244962 + RSINE1 SINE B4 2 112 -53 3 1360 267 240 0 0 chr11 101599478 101599603 -20244253 + (CAGAGA)n Simple_repeat Simple_repeat 3 127 0 3 1360 21 57 0 0 chr11 101600011 101600046 -20243810 + AT_rich Low_complexity Low_complexity 1 35 0 3 1360 703 194 38 0 chr11 101600112 101600253 -20243603 - B1_Mur2 SINE Alu 0 149 2 3 1360 438 291 56 46 chr11 101600253 101600306 -20243550 - B4 SINE B4 0 224 27 3 1360 243 88 0 0 chr11 101600433 101600467 -20243389 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1360 1197 55 14 0 chr11 101600467 101600612 -20243244 - B1_Mm SINE Alu 0 147 1 3 1360 353 289 48 32 chr11 101600795 101600920 -20242936 - B1F SINE Alu -2 147 21 3 1360 387 198 65 6 chr11 101601246 101601414 -20242442 + (TGAG)n Simple_repeat Simple_repeat 3 180 0 3 1360 314 225 52 17 chr11 101601432 101601604 -20242252 + (TGAG)n Simple_repeat Simple_repeat 3 180 0 3 1360 364 210 65 6 chr11 101601732 101601900 -20241956 + (TGAG)n Simple_repeat Simple_repeat 3 180 0 3 1360 25 0 0 0 chr11 101603099 101603124 -20240732 + AT_rich Low_complexity Low_complexity 1 25 0 3 1360 234 208 0 0 chr11 101603139 101603192 -20240664 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1360 450 258 0 31 chr11 101603197 101603293 -20240563 - B1_Mur2 SINE Alu -56 93 1 3 1360 672 254 17 98 chr11 101603377 101603613 -20240243 - ID_B1 SINE B4 -1 223 7 3 1360 22 35 0 0 chr11 101603961 101603990 -20239866 + AT_rich Low_complexity Low_complexity 1 29 0 3 1360 493 313 96 39 chr11 101604022 101604178 -20239678 - RSINE1 SINE B4 0 165 1 3 1360 301 306 36 18 chr11 101604184 101604294 -20239562 - RSINE1 SINE B4 0 165 54 3 1360 1145 42 21 0 chr11 101604797 101604939 -20238917 + B1_Mm SINE Alu 2 146 -1 3 1360 599 205 17 0 chr11 101605026 101605143 -20238713 - PB1D9 SINE Alu -1 119 1 3 1360 1463 78 5 0 chr11 101605261 101605453 -20238403 - B2_Mm1a SINE B2 0 193 1 3 1360 578 267 143 73 chr11 101605616 101605875 -20237981 - B4A SINE B4 -11 281 5 3 1360 547 243 43 35 chr11 101605908 101606049 -20237807 - B1F1 SINE Alu -7 142 1 3 1360 590 211 9 9 chr11 101606252 101606362 -20237494 - B1_Mur3 SINE Alu -39 110 1 3 1360 362 257 8 131 chr11 101606256 101606386 -20237470 - MT2B LTR ERVL -343 258 145 3 1360 1430 89 5 0 chr11 101606691 101606881 -20236975 - B2_Mm1a SINE B2 0 193 3 3 1360 865 156 7 39 chr11 101606945 101607098 -20236758 + B1_Mur3 SINE Alu 1 148 -1 3 1360 527 223 21 166 chr11 101607180 101607325 -20236531 - B3A SINE B2 -69 129 6 3 1360 365 272 12 12 chr11 101607445 101607527 -20236329 + ID4_ SINE ID 2 83 0 3 1360 360 316 13 93 chr11 101607527 101607595 -20236261 + B4 SINE B4 2 139 -153 3 1360 333 174 58 0 chr11 101607551 101607620 -20236236 + B1_Mus1 SINE Alu 12 84 -64 4 1360 714 217 0 35 chr11 101607622 101607765 -20236091 + B1_Mus2 SINE Alu 5 142 -5 4 1360 255 286 132 0 chr11 101607755 101607846 -20236010 + ID_B1 SINE B4 118 220 -4 4 1360 1303 81 0 6 chr11 101607854 101608027 -20235829 + B2_Mm2 SINE B2 1 172 -23 4 1360 728 319 13 2 chr11 101608063 101608263 -20235593 - B3A SINE B2 -10 206 6 4 1360 925 232 14 28 chr11 101608267 101608484 -20235372 - B3 SINE B2 -2 214 1 4 1360 624 288 0 0 chr11 101608491 101608637 -20235219 - B1F1 SINE Alu -3 146 1 4 1360 2095 138 187 10 chr11 101609208 101609604 -20234252 - RMER4A LTR ERVK 0 466 1 4 1360 22 0 0 0 chr11 101609690 101609712 -20234144 + AT_rich Low_complexity Low_complexity 1 22 0 4 1360 903 238 99 48 chr11 101609730 101609804 -20234052 + B4 SINE B4 25 110 -182 4 1360 342 0 0 0 chr11 101609804 101609842 -20234014 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1360 903 238 99 48 chr11 101609842 101610019 -20233837 + B4 SINE B4 111 288 -4 4 1360 341 193 26 39 chr11 101610081 101610237 -20233619 + (CA)n Simple_repeat Simple_repeat 2 155 0 4 1360 255 184 102 0 chr11 101610350 101610399 -20233457 - PB1D9 SINE Alu -8 112 59 4 1360 397 264 176 51 chr11 101610412 101610588 -20233268 - B3A SINE B2 0 198 1 4 1360 1376 81 37 5 chr11 101610672 101610859 -20232997 - B2_Mm2 SINE B2 -1 194 2 4 1360 268 290 36 31 chr11 101610895 101611022 -20232834 + L1MB7 LINE L1 5830 5968 -206 4 1360 419 267 17 0 chr11 101611035 101611151 -20232705 + L1MB7 LINE L1 6018 6135 -49 4 1360 375 266 49 35 chr11 101611658 101611802 -20232054 - B1F SINE Alu 0 149 4 4 1360 688 216 173 0 chr11 101611985 101612147 -20231709 - B3 SINE B2 -26 190 1 4 1360 1541 186 258 5 chr11 101612611 101613038 -20230818 - RMER4B LTR ERVK -58 527 28 4 1360 1239 104 0 47 chr11 101613023 101613215 -20230641 - B2_Mm2 SINE B2 -4 191 9 4 1360 319 83 0 0 chr11 101613214 101613262 -20230594 - RMER4B LTR ERVK -537 48 1 4 1360 490 236 55 9 chr11 101614097 101614209 -20229647 + PB1 SINE Alu 10 127 0 4 1360 380 248 27 62 chr11 101614212 101614324 -20229532 + PB1D10 SINE Alu 3 110 -7 4 1360 261 0 0 0 chr11 101614390 101614419 -20229437 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1360 717 266 0 0 chr11 101614702 101614845 -20229011 - B4 SINE B4 -141 151 9 4 1360 23 54 0 0 chr11 101614849 101614886 -20228970 + AT_rich Low_complexity Low_complexity 1 37 0 4 1360 587 156 178 8 chr11 101614904 101615033 -20228823 - RSINE1 SINE B4 -14 151 1 4 1360 298 247 105 13 chr11 101615033 101615185 -20228671 - L1M4 LINE L1 -397 5787 5622 4 1360 204 239 0 42 chr11 101616253 101616283 -20227573 + polypyrimidine Low_complexity Low_complexity 20 48 0 4 1360 1216 91 85 0 chr11 101616283 101616301 -20227555 - B2_Mm1a SINE B2 0 193 162 4 1360 414 0 0 0 chr11 101616301 101616347 -20227509 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 4 1360 1216 91 85 0 chr11 101616347 101616504 -20227352 - B2_Mm1a SINE B2 -32 161 4 4 1360 204 239 0 42 chr11 101616504 101616521 -20227335 + polypyrimidine Low_complexity Low_complexity 3 19 0 4 1360 384 255 0 41 chr11 101616531 101616629 -20227227 + B1_Mur3 SINE Alu 43 136 -13 4 1360 254 305 17 0 chr11 101616785 101616844 -20227012 - ID4 SINE ID -13 70 11 4 1360 1309 105 0 6 chr11 101616864 101617046 -20226810 - B2_Mm2 SINE B2 -14 181 1 4 1360 437 216 106 89 chr11 101617103 101617273 -20226583 - B3A SINE B2 -4 191 45 4 1360 240 111 0 0 chr11 101617298 101617334 -20226522 + (CATA)n Simple_repeat Simple_repeat 3 38 0 4 1360 434 368 160 0 chr11 101617884 101618096 -20225760 - MIR SINE MIR 0 262 17 4 1360 876 170 0 28 chr11 101618273 101618418 -20225438 - B1_Mus1 SINE Alu -7 141 1 4 1360 372 88 0 0 chr11 101619393 101619450 -20224406 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1360 378 0 0 0 chr11 101619450 101619491 -20224365 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1360 509 200 24 0 chr11 101619494 101619579 -20224277 - B1_Mur1 SINE Alu -42 107 21 4 1360 349 275 36 81 chr11 101619579 101619605 -20224251 - MT2B LTR ERVL -341 260 155 4 1360 292 183 96 27 chr11 101619670 101619743 -20224113 - B3 SINE B2 -78 138 61 4 1360 221 139 23 0 chr11 101620538 101620581 -20223275 + CT-rich Low_complexity Low_complexity 2 45 0 4 1360 466 292 27 20 chr11 101620582 101620729 -20223127 - B1_Mur1 SINE Alu -1 148 1 4 1360 227 326 214 31 chr11 101620818 101620916 -20222940 - B1F1 SINE Alu 0 117 2 4 1360 431 279 175 0 chr11 101621102 101621331 -20222525 - L1MB5 LINE L1 -248 5926 5658 4 1360 842 171 15 107 chr11 101621344 101621540 -20222316 - B3 SINE B2 -8 208 31 4 1360 1534 42 16 5 chr11 101621579 101621769 -20222087 - B2_Mm1a SINE B2 -1 192 1 4 1360 606 214 34 60 chr11 101621786 101621935 -20221921 - B3A SINE B2 -3 195 51 4 1360 1139 62 7 7 chr11 101622015 101622162 -20221694 - B1_Mus2 SINE Alu 0 147 1 4 1360 428 217 33 0 chr11 101622190 101622282 -20221574 - PB1D9 SINE Alu -25 95 1 4 1360 708 12 0 0 chr11 101622291 101622372 -20221484 + (TTTCC)n Simple_repeat Simple_repeat 4 84 0 4 1360 232 293 61 0 chr11 101622389 101622471 -20221385 - L1MB5 LINE L1 -573 5607 5521 4 1360 352 275 167 43 chr11 101622642 101622828 -20221028 - B3 SINE B2 -2 214 6 4 1360 700 166 77 77 chr11 101622844 101622860 -20220996 - B2_Mm2 SINE B2 -9 186 172 4 1360 1170 52 0 0 chr11 101622860 101622996 -20220860 + B1_Mus1 SINE Alu 2 137 -11 4 1360 216 0 0 0 chr11 101622996 101623020 -20220836 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1360 700 166 77 77 chr11 101623020 101623185 -20220671 - B2_Mm2 SINE B2 -24 171 5 4 1360 612 259 65 0 chr11 101623216 101623355 -20220501 + ID_B1 SINE B4 2 149 -75 4 1360 496 209 67 0 chr11 101623797 101623902 -20219954 - ID_B1 SINE B4 -29 195 84 4 1360 1458 78 5 25 chr11 101623967 101624165 -20219691 - B2_Mm2 SINE B2 0 195 2 4 1360 816 131 72 7 chr11 101624237 101624375 -20219481 - B1_Mur3 SINE Alu 0 149 3 4 1360 21 0 0 0 chr11 101624376 101624397 -20219459 + AT_rich Low_complexity Low_complexity 1 21 0 4 1360 790 197 19 21 chr11 101624402 101624596 -20219260 - B3 SINE B2 0 195 3 4 1360 240 35 0 0 chr11 101624598 101624627 -20219229 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1360 290 278 20 49 chr11 101624673 101624775 -20219081 - RSINE1 SINE B4 -42 123 25 4 1360 195 69 0 0 chr11 101624911 101624940 -20218916 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1360 342 0 0 0 chr11 101626277 101626315 -20217541 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1360 546 91 0 0 chr11 101626319 101626396 -20217460 + (GGGA)n Simple_repeat Simple_repeat 1 77 0 4 1360 917 230 173 4 chr11 101626538 101626787 -20217069 - B4 SINE B4 0 292 2 4 1360 261 128 0 0 chr11 101626797 101626844 -20217012 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1360 1024 72 56 28 chr11 101626844 101626987 -20216869 - B1_Mus1 SINE Alu 0 148 2 4 1360 823 181 21 7 chr11 101627106 101627251 -20216605 - B1_Mur1 SINE Alu -1 148 2 4 1360 509 239 9 18 chr11 101627251 101627362 -20216494 + PB1D7 SINE Alu 11 120 0 4 1360 409 135 220 40 chr11 101627370 101627470 -20216386 + RSINE1 SINE B4 11 128 -37 4 1360 219 69 0 0 chr11 101627501 101627530 -20216326 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1360 302 361 0 10 chr11 101627659 101627757 -20216099 - MIR SINE MIR -59 149 53 4 1360 885 103 2 0 chr11 101628307 101628447 -20215409 + B1_Mus1 SINE Alu 1 143 -5 4 1360 487 248 57 0 chr11 101629613 101629718 -20214138 - PB1D7 SINE Alu -3 117 7 4 1360 1029 232 0 37 chr11 101629757 101629972 -20213884 - B3 SINE B2 -5 211 5 4 1360 496 279 7 52 chr11 101630078 101630214 -20213642 - RSINE1 SINE B4 -30 135 6 4 1360 234 62 0 0 chr11 101633680 101633712 -20210144 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1360 396 40 0 0 chr11 101634271 101634321 -20209535 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 4 1360 497 220 54 18 chr11 101634321 101634421 -20209435 - B1F SINE Alu -13 136 33 4 1360 23 0 0 0 chr11 101634757 101634780 -20209076 + AT_rich Low_complexity Low_complexity 1 23 0 4 1360 208 70 93 0 chr11 101635675 101635718 -20208138 + T-rich Low_complexity Low_complexity 6 52 0 4 1360 990 41 0 0 chr11 101635718 101635839 -20208017 - B1_Mus2 SINE Alu 0 147 27 4 1360 703 169 8 0 chr11 101635842 101635960 -20207896 - B1_Mus2 SINE Alu 0 147 29 4 1360 612 298 56 24 chr11 101635961 101636174 -20207682 - ID_B1 SINE B4 0 224 5 4 1360 266 323 40 20 chr11 101636189 101636290 -20207566 - B1F SINE Alu 0 149 47 4 1360 769 141 8 0 chr11 101637434 101637555 -20206301 - B1_Mus2 SINE Alu 0 147 26 4 1360 427 83 14 27 chr11 101637562 101637636 -20206220 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 4 1360 1118 62 21 0 chr11 101637638 101637782 -20206074 - B1_Mus1 SINE Alu -1 147 1 4 1360 567 78 0 0 chr11 101637799 101637876 -20205980 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1360 185 381 36 0 chr11 101638811 101638895 -20204961 + MER5A DNA MER1_type 98 184 -5 4 1360 375 201 24 97 chr11 101639092 101639257 -20204599 - RMER17C LTR ERVK -135 275 123 4 1360 188 320 97 0 chr11 101639304 101639407 -20204449 + L3b LINE CR1 239 351 -131 4 1360 340 211 95 0 chr11 101639782 101639877 -20203979 - B1F SINE Alu -45 104 1 4 1360 293 298 50 1 chr11 101640003 101640105 -20203751 + L2b LINE L2 3281 3424 -2 4 1360 456 211 66 19 chr11 101640419 101640525 -20203331 - PB1D10 SINE Alu -6 111 1 4 1360 1512 48 16 0 chr11 101640584 101640771 -20203085 + B2_Mm1a SINE B2 3 192 -1 4 1360 228 35 0 0 chr11 101641827 101641856 -20202000 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1360 189 74 0 0 chr11 101643619 101643646 -20200210 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 5 1360 24 0 0 0 chr11 101644097 101644121 -20199735 + AT_rich Low_complexity Low_complexity 1 24 0 5 1360 189 0 0 0 chr11 101645007 101645028 -20198828 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1360 249 242 0 0 chr11 101645757 101645823 -20198033 + G-rich Low_complexity Low_complexity 4 69 0 5 1360 339 113 0 0 chr11 101646176 101646229 -20197627 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1360 182 43 0 0 chr11 101647308 101647331 -20196525 + L2b LINE L2 3336 3358 -17 5 1360 848 234 26 15 chr11 101649174 101649369 -20194487 - B3A SINE B2 0 198 2 5 1360 462 49 0 0 chr11 101649383 101649444 -20194412 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 5 1360 459 274 9 0 chr11 101649447 101649553 -20194303 - ID_B1 SINE B4 -7 217 111 5 1360 239 268 145 66 chr11 101649936 101650088 -20193768 + MTC LTR MaLR 155 318 -103 5 1360 301 43 21 21 chr11 101650446 101650494 -20193362 + (CCCCCA)n Simple_repeat Simple_repeat 4 51 0 5 1360 626 279 25 25 chr11 101651029 101651187 -20192669 + RSINE1 SINE B4 8 165 0 5 1360 954 138 0 0 chr11 101651188 101651399 -20192457 + (CA)n Simple_repeat Simple_repeat 1 211 0 5 1360 858 313 27 31 chr11 101651554 101651847 -20192009 - B4A SINE B4 0 292 1 5 1360 228 67 0 0 chr11 101651880 101651910 -20191946 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 5 1360 423 288 42 21 chr11 101651919 101652061 -20191795 - RSINE1 SINE B4 -19 146 2 5 1360 198 0 0 0 chr11 101652273 101652295 -20191561 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1360 204 40 0 0 chr11 101652798 101652823 -20191033 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1360 725 217 6 58 chr11 101652865 101653036 -20190820 - ID_B1 SINE B4 -9 215 54 5 1360 351 0 0 0 chr11 101653087 101653126 -20190730 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1360 222 37 0 0 chr11 101653126 101653152 -20190704 + (CTTTG)n Simple_repeat Simple_repeat 3 29 0 5 1360 537 288 32 142 chr11 101653740 101653833 -20190023 - ID_B1 SINE B4 -2 222 146 5 1360 207 0 0 0 chr11 101653833 101653856 -20190000 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1360 683 146 102 31 chr11 101653857 101653984 -20189872 - B1_Mur3 SINE Alu -13 136 1 5 1360 537 288 32 142 chr11 101653984 101654001 -20189855 - ID_B1 SINE B4 -79 145 134 5 1360 852 256 65 0 chr11 101654001 101654200 -20189656 - B3 SINE B2 -3 213 2 5 1360 537 288 32 142 chr11 101654200 101654333 -20189523 - ID_B1 SINE B4 -91 133 3 5 1360 240 58 55 55 chr11 101654350 101654405 -20189451 + A-rich Low_complexity Low_complexity 3 57 0 5 1360 237 275 36 50 chr11 101654435 101654544 -20189312 - PB1 SINE Alu -6 143 32 5 1360 195 42 0 0 chr11 101654865 101654889 -20188967 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 5 1360 646 264 49 99 chr11 101655054 101655277 -20188579 + ID_B1 SINE B4 6 217 -7 5 1360 1260 95 21 16 chr11 101655637 101655830 -20188026 + B2_Mm2 SINE B2 2 195 0 5 1360 207 0 0 0 chr11 101655858 101655881 -20187975 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1360 298 196 71 0 chr11 101655915 101655971 -20187885 - ID SINE ID -141 83 24 5 1360 218 367 20 39 chr11 101656077 101656179 -20187677 - RSINE1 SINE B4 -63 102 3 5 1360 952 256 8 75 chr11 101656425 101656666 -20187190 - B4 SINE B4 -10 282 58 5 1360 623 160 332 3 chr11 101656782 101656946 -20186910 - ORR1C2 LTR MaLR -20 364 125 5 1360 538 172 16 0 chr11 101656948 101657076 -20186780 + GA-rich Low_complexity Low_complexity 1 130 0 5 1360 1078 146 0 27 chr11 101657076 101657259 -20186597 - ORR1C2 LTR MaLR -199 185 8 5 1360 211 238 149 56 chr11 101657229 101657254 -20186602 - B4A SINE B4 -94 198 125 5 1360 312 203 86 14 chr11 101657254 101657324 -20186532 - PB1D10 SINE Alu -36 81 7 5 1360 211 238 149 56 chr11 101657324 101657336 -20186520 - B4A SINE B4 -94 124 82 5 1360 3430 57 32 0 chr11 101657344 101657781 -20186075 - L1Md_F3 LINE L1 0 6584 6134 5 1360 1659 37 0 0 chr11 101657811 101658002 -20185854 + B2_Mm1a SINE B2 2 192 -1 5 1360 198 0 0 0 chr11 101658013 101658035 -20185821 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 5 1360 195 355 108 19 chr11 101658178 101658336 -20185520 - L2c LINE L2 -189 3198 3027 5 1360 413 259 159 159 chr11 101658830 101658956 -20184900 + B4A SINE B4 2 98 -194 5 1360 1165 95 0 0 chr11 101658956 101659103 -20184753 - B1_Mus1 SINE Alu 0 148 2 5 1360 413 259 159 159 chr11 101659103 101659252 -20184604 + B4A SINE B4 99 277 -15 5 1360 360 0 0 0 chr11 101659262 101659302 -20184554 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1360 1164 88 0 18 chr11 101659790 101659932 -20183924 + B2_Mm2 SINE B2 15 154 -41 5 1360 276 30 0 0 chr11 101659932 101659965 -20183891 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 1360 1164 88 0 18 chr11 101659965 101659985 -20183871 + B2_Mm2 SINE B2 155 174 -21 5 1360 467 161 698 0 chr11 101660148 101660275 -20183581 - ID_B1 SINE B4 0 224 9 5 1360 369 0 0 0 chr11 101660275 101660316 -20183540 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 5 1360 931 120 34 34 chr11 101660321 101660468 -20183388 - B1_Mur4 SINE Alu -1 149 3 5 1360 1174 162 35 15 chr11 101660493 101660694 -20183162 - B3 SINE B2 -11 205 1 5 1360 648 102 0 0 chr11 101661464 101661562 -20182294 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 5 1360 874 276 81 27 chr11 101661604 101661865 -20181991 - B4 SINE B4 -3 289 15 5 1360 337 235 173 50 chr11 101661890 101662029 -20181827 - RMER10B LTR ERVL -51 347 192 5 1360 293 281 73 0 chr11 101662037 101662119 -20181737 - PB1D7 SINE Alu -8 112 25 5 1360 26 30 0 0 chr11 101662150 101662183 -20181673 + AT_rich Low_complexity Low_complexity 1 33 0 5 1360 253 312 246 15 chr11 101662191 101662321 -20181535 - RSINE1 SINE B4 -1 164 5 5 1360 239 240 0 0 chr11 101662324 101662374 -20181482 + MIR SINE MIR 102 151 -111 5 1360 342 0 0 0 chr11 101662375 101662413 -20181443 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1360 662 94 187 49 chr11 101662478 101662601 -20181255 - B1_Mus2 SINE Alu 0 149 10 5 1360 547 215 22 51 chr11 101663811 101663948 -20179908 + ID_B1 SINE B4 81 213 -11 5 1360 313 287 140 143 chr11 101664163 101664384 -20179472 - MER2 DNA MER2_type -23 322 100 5 1360 1052 80 58 0 chr11 101664384 101664522 -20179334 - B1_Mus2 SINE Alu 0 147 2 5 1360 326 273 50 51 chr11 101664522 101664621 -20179235 - MER2 DNA MER2_type -246 99 3 5 1360 785 232 15 70 chr11 101664649 101664802 -20179054 + B3A SINE B2 8 162 -36 5 1360 414 0 0 0 chr11 101664802 101664848 -20179008 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1360 785 232 15 70 chr11 101664848 101664893 -20178963 + B3A SINE B2 163 195 -3 5 1360 765 147 103 0 chr11 101664895 101665031 -20178825 + B1_Mur4 SINE Alu 1 150 0 5 1360 3018 40 0 0 chr11 101665044 101665390 -20178466 - ORR1A1 LTR MaLR 0 346 1 5 1360 992 186 15 40 chr11 101665444 101665646 -20178210 - B3 SINE B2 0 216 20 5 1360 800 271 42 5 chr11 101666002 101666217 -20177639 + ID_B1 SINE B4 1 223 -1 5 1360 848 233 130 5 chr11 101666572 101666788 -20177068 - MER58B DNA MER1_type -1 340 98 5 1360 899 203 38 21 chr11 101666906 101666924 -20176932 - B3 SINE B2 -27 189 173 5 1360 344 41 41 0 chr11 101666924 101666973 -20176883 + (TATG)n Simple_repeat Simple_repeat 4 54 0 5 1360 899 203 38 21 chr11 101666973 101667140 -20176716 - B3 SINE B2 -44 172 2 5 1360 273 29 0 0 chr11 101667386 101667420 -20176436 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1360 464 204 59 99 chr11 101667440 101667592 -20176264 + B4A SINE B4 76 221 -71 5 1360 1075 53 0 0 chr11 101667467 101667598 -20176258 + B1_Mus1 SINE Alu 18 148 0 5 1360 1368 85 0 6 chr11 101667639 101667816 -20176040 + B2_Mm2 SINE B2 1 176 -19 5 1360 279 347 47 40 chr11 101668695 101668845 -20175011 + L2b LINE L2 3224 3374 -1 5 1360 483 63 0 0 chr11 101669423 101669486 -20174370 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 5 1360 760 260 19 51 chr11 101669490 101669705 -20174151 - ID_B1 SINE B4 -14 210 3 5 1360 266 232 0 18 chr11 101669744 101669801 -20174055 - ID4_ SINE ID -27 56 1 5 1360 1300 201 0 0 chr11 101669828 101670042 -20173814 - B3 SINE B2 -2 214 1 5 1360 325 100 0 39 chr11 101670256 101670308 -20173548 - HAL1-3A_ME LINE L1 -832 2026 1977 5 1360 688 261 83 10 chr11 101671213 101671418 -20172438 + ID_B1 SINE B4 2 221 -3 5 1360 527 284 33 26 chr11 101672295 101672447 -20171409 - ID_B1 SINE B4 -18 206 54 5 1360 337 280 32 11 chr11 101673247 101673341 -20170515 + MIRb SINE MIR 85 180 -88 5 1360 975 234 88 40 chr11 101673403 101673500 -20170356 + B4A SINE B4 2 105 -187 5 1360 2372 74 48 13 chr11 101673500 101673816 -20170040 + ORR1A2 LTR MaLR 1 327 0 5 1360 975 234 88 40 chr11 101673816 101673990 -20169866 + B4A SINE B4 106 286 -6 5 1360 614 281 18 30 chr11 101674065 101674230 -20169626 - RSINE1 SINE B4 0 165 3 5 1360 236 225 11 111 chr11 101674286 101674376 -20169480 - ID4_ SINE ID 0 83 3 5 1360 466 251 40 165 chr11 101674416 101674640 -20169216 + B3A SINE B2 2 197 -1 5 1360 269 234 111 51 chr11 101674845 101674962 -20168894 - MIR3 SINE MIR -21 187 64 5 1360 303 127 0 0 chr11 101675015 101675078 -20168778 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1360 543 242 61 0 chr11 101675095 101675227 -20168629 - ID_B1 SINE B4 -83 141 2 5 1360 519 186 114 15 chr11 101675240 101675371 -20168485 - B1F SINE Alu -5 144 1 5 1360 704 229 14 0 chr11 101675469 101675613 -20168243 + RSINE1 SINE B4 16 161 -4 5 1360 209 342 0 0 chr11 101676164 101676237 -20167619 + GA-rich Low_complexity Low_complexity 2 74 0 5 1360 225 0 0 0 chr11 101677449 101677474 -20166382 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1360 185 0 40 0 chr11 101677692 101677717 -20166139 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1360 1330 102 11 5 chr11 101677785 101677972 -20165884 - B2_Mm2 SINE B2 -7 188 1 5 1360 445 279 47 54 chr11 101678259 101678276 -20165580 - ID_B1 SINE B4 -19 205 83 6 1360 562 234 56 0 chr11 101678276 101678383 -20165473 - B1F SINE Alu -35 114 2 6 1360 352 286 11 0 chr11 101678545 101678636 -20165220 + MTE2a LTR MaLR 5 96 -283 6 1360 325 236 84 157 chr11 101678639 101678804 -20165052 + MTE2a LTR MaLR 60 212 -167 6 1360 561 29 14 0 chr11 101678804 101678873 -20164983 - ORR1A3 LTR MaLR 0 326 257 6 1360 971 144 64 43 chr11 101678876 101678903 -20164953 - B2_Mm2 SINE B2 -2 193 160 6 1360 5386 45 5 8 chr11 101678903 101679553 -20164303 + L1_Mus1 LINE L1 5918 6565 -2 6 1360 971 144 64 43 chr11 101679553 101679713 -20164143 - B2_Mm2 SINE B2 -36 159 3 6 1360 1748 139 37 30 chr11 101679713 101679972 -20163884 - ORR1A3 LTR MaLR -64 262 2 6 1360 256 169 28 84 chr11 101679985 101680002 -20163854 + MTE2a LTR MaLR 299 313 -57 6 1360 3373 36 23 0 chr11 101680002 101680389 -20163467 + MTA_Mm LTR MaLR 1 396 0 6 1360 256 169 28 84 chr11 101680389 101680442 -20163414 + MTE2a LTR MaLR 314 365 -5 6 1360 532 287 0 0 chr11 101680504 101680619 -20163237 - PB1D7 SINE Alu -1 119 5 6 1360 391 226 0 97 chr11 101680633 101680736 -20163120 - PB1D10 SINE Alu -2 115 23 6 1360 289 220 128 32 chr11 101680803 101680897 -20162959 + BC1_Mm scRNA scRNA 2 104 -48 6 1360 1067 120 59 16 chr11 101681078 101681264 -20162592 - B2_Mm2 SINE B2 -1 194 1 6 1360 511 211 139 86 chr11 101681284 101681471 -20162385 - B3A SINE B2 0 198 2 6 1360 220 241 0 69 chr11 101681508 101681566 -20162290 - ID2 SINE ID -3 80 27 6 1360 590 241 13 52 chr11 101681616 101681769 -20162087 - B1F2 SINE Alu -1 148 2 6 1360 24 32 0 0 chr11 101682755 101682786 -20161070 + GC_rich Low_complexity Low_complexity 1 31 0 6 1360 208 158 26 0 chr11 101683051 101683089 -20160767 + CT-rich Low_complexity Low_complexity 3 41 0 6 1360 649 266 21 7 chr11 101683118 101683258 -20160598 - RSINE1 SINE B4 -15 150 9 6 1360 216 0 0 0 chr11 101683273 101683297 -20160559 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1360 303 207 21 0 chr11 101683422 101683562 -20160294 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 1360 414 309 119 34 chr11 101683768 101684036 -20159820 + B4 SINE B4 2 292 0 6 1360 1100 185 48 19 chr11 101684228 101684437 -20159419 - B3 SINE B2 0 216 2 6 1360 375 23 0 0 chr11 101684453 101684497 -20159359 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1360 398 222 0 0 chr11 101684502 101684574 -20159282 - B3A SINE B2 -38 160 89 6 1360 899 232 11 0 chr11 101685005 101685186 -20158670 - B3A SINE B2 -15 183 1 6 1360 1056 70 27 27 chr11 101685556 101685703 -20158153 - B1_Mm SINE Alu 0 147 1 6 1360 1413 69 37 16 chr11 101685736 101685927 -20157929 - B2_Mm2 SINE B2 0 195 1 6 1360 180 0 0 0 chr11 101685928 101685948 -20157908 + (TTCTC)n Simple_repeat Simple_repeat 1 20 0 6 1360 666 131 54 0 chr11 101685949 101686117 -20157739 + CT-rich Low_complexity Low_complexity 2 178 0 6 1360 623 199 99 28 chr11 101686148 101686329 -20157527 - B2_Mm2 SINE B2 -1 194 1 6 1360 1703 190 94 46 chr11 101686575 101686967 -20156889 + MTD LTR MaLR 1 411 -8 6 1360 315 309 0 23 chr11 101686969 101687055 -20156801 + RSINE1 SINE B4 20 103 -62 6 1360 970 80 7 28 chr11 101687070 101687212 -20156644 - B1_Mus1 SINE Alu 0 148 10 6 1360 493 269 44 88 chr11 101687072 101687231 -20156625 - B4 SINE B4 -69 223 72 6 1360 190 345 43 70 chr11 101687232 101687419 -20156437 + L2b LINE L2 2819 3000 -419 6 1360 1182 182 33 9 chr11 101687626 101687837 -20156019 - B3 SINE B2 0 216 1 6 1360 1214 218 51 112 chr11 101687948 101687999 -20155857 - MTE2a LTR MaLR 0 379 334 6 1360 2939 73 42 0 chr11 101687999 101688381 -20155475 + MTB LTR MaLR 1 398 -2 6 1360 1214 218 51 112 chr11 101688381 101688722 -20155134 - MTE2a LTR MaLR -46 333 11 6 1360 239 300 25 0 chr11 101689234 101689314 -20154542 + ID4_ SINE ID 2 83 0 6 1360 417 167 0 29 chr11 101689314 101689419 -20154437 + G-rich Low_complexity Low_complexity 2 103 0 6 1360 280 212 15 29 chr11 101689606 101689674 -20154182 - ID_B1 SINE B4 -2 222 156 6 1360 322 228 66 58 chr11 101689698 101689819 -20154037 - MER96B DNA hAT -271 146 25 6 1360 318 280 54 31 chr11 101689849 101689895 -20153961 - B1F1 SINE Alu -12 137 6 6 1360 354 229 36 0 chr11 101689895 101689978 -20153878 - ID_B1 SINE B4 -52 172 87 6 1360 758 199 295 0 chr11 101690335 101690501 -20153355 - B3 SINE B2 0 216 2 6 1360 235 269 122 112 chr11 101690695 101690729 -20153127 - B2_Mm1a SINE B2 -2 191 2 6 1360 555 299 32 0 chr11 101690729 101690883 -20152973 - RSINE1 SINE B4 -4 161 3 6 1360 197 258 42 63 chr11 101690975 101691070 -20152786 + L2b LINE L2 3252 3344 -31 6 1360 270 81 0 0 chr11 101691071 101691108 -20152748 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 6 1360 349 201 423 22 chr11 101692384 101692521 -20151335 - ID_B1 SINE B4 -1 223 32 6 1360 246 311 0 47 chr11 101692471 101692535 -20151321 - ID4_ SINE ID -3 80 20 6 1360 756 236 23 46 chr11 101692556 101692729 -20151127 - ID_B1 SINE B4 -12 212 44 6 1360 288 224 30 24 chr11 101692734 101692899 -20150957 + C-rich Low_complexity Low_complexity 3 168 0 6 1360 257 267 231 22 chr11 101692939 101692967 -20150889 - B4A SINE B4 -46 246 122 6 1360 543 240 10 0 chr11 101692967 101693067 -20150789 - PB1D10 SINE Alu -8 109 9 6 1360 428 265 52 52 chr11 101693255 101693410 -20150446 - MER5A DNA MER1_type -3 186 32 6 1360 2681 58 3 3 chr11 101693826 101694153 -20149703 - ORR1A2 LTR MaLR 0 327 1 6 1360 799 274 27 11 chr11 101694259 101694447 -20149409 - B4A SINE B4 -4 288 98 6 1360 448 254 66 6 chr11 101694568 101694734 -20149122 + MER57A-int LTR ERV1 5804 5979 -208 6 1360 775 170 44 15 chr11 101694819 101694956 -20148900 + B1_Mur3 SINE Alu 9 149 0 6 1360 190 95 48 0 chr11 101694986 101695028 -20148828 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 6 1360 369 268 0 0 chr11 101695189 101695271 -20148585 + ID4 SINE ID 2 83 0 6 1360 482 242 20 96 chr11 101695326 101695472 -20148384 - ID_B1 SINE B4 -3 221 87 6 1360 180 77 0 0 chr11 101695472 101695498 -20148358 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 6 1360 478 284 26 0 chr11 101695501 101695617 -20148239 - PB1D7 SINE Alu -1 119 1 6 1360 201 328 127 11 chr11 101695692 101695792 -20148064 + MIRm SINE MIR 42 151 -117 6 1360 27 0 0 0 chr11 101696351 101696378 -20147478 + AT_rich Low_complexity Low_complexity 1 27 0 6 1360 200 152 43 0 chr11 101696804 101696850 -20147006 + CT-rich Low_complexity Low_complexity 2 49 0 6 1360 885 192 0 0 chr11 101696857 101697003 -20146853 - B1_Mur4 SINE Alu -2 148 3 6 1360 268 188 46 15 chr11 101697006 101697071 -20146785 + MIR3 SINE MIR 97 163 -45 6 1360 1320 97 6 6 chr11 101697410 101697587 -20146269 - B2_Mm2 SINE B2 -18 177 1 6 1360 1160 82 7 0 chr11 101697631 101697777 -20146079 - B1_Mus1 SINE Alu -1 147 1 6 1360 236 91 0 0 chr11 101697786 101697819 -20146037 - RLTR25A LTR ERVK -416 687 655 6 1360 1119 261 83 8 chr11 101698297 101698563 -20145293 - B4 SINE B4 -6 286 1 6 1360 432 254 88 56 chr11 101698887 101699012 -20144844 + RSINE1 SINE B4 22 150 -15 6 1360 228 67 0 0 chr11 101699028 101699058 -20144798 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 6 1360 2156 136 141 0 chr11 101699089 101699458 -20144398 - MTC LTR MaLR 0 421 1 6 1360 772 197 0 0 chr11 101699477 101699609 -20144247 - B1_Mur2 SINE Alu -16 133 2 6 1360 281 68 0 22 chr11 101699670 101699715 -20144141 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1360 757 293 81 8 chr11 101699758 101699958 -20143898 + B4A SINE B4 14 226 -66 6 1360 330 91 0 0 chr11 101699958 101700013 -20143843 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1360 757 293 81 8 chr11 101700013 101700046 -20143810 + B4A SINE B4 227 263 -29 6 1360 207 114 0 0 chr11 101700091 101700126 -20143730 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1360 1214 54 7 0 chr11 101700151 101700298 -20143558 - B1_Mus1 SINE Alu 0 148 1 6 1360 195 100 0 0 chr11 101700901 101700931 -20142925 + (C)n Simple_repeat Simple_repeat 1 30 0 6 1360 316 158 5 57 chr11 101701313 101701414 -20142442 - B1_Mur4 SINE Alu 0 150 59 6 1360 563 219 26 0 chr11 101701487 101701601 -20142255 - PB1D9 SINE Alu -1 119 3 6 1360 238 326 52 10 chr11 101701643 101701739 -20142117 - B4 SINE B4 -180 112 13 6 1360 263 242 63 16 chr11 101701678 101701741 -20142115 - ID4_ SINE ID -7 76 11 6 1360 22 56 0 0 chr11 101701797 101701833 -20142023 + AT_rich Low_complexity Low_complexity 1 36 0 6 1360 846 275 0 6 chr11 101701849 101702032 -20141824 - B3A SINE B2 -16 182 1 6 1360 198 200 200 0 chr11 101702038 101702088 -20141768 - MIR SINE MIR -64 144 85 6 1360 324 300 131 101 chr11 101702235 101702298 -20141558 - ID_B1 SINE B4 -17 275 167 6 1360 509 297 0 0 chr11 101702298 101702409 -20141447 - PB1D10 SINE Alu -1 116 6 6 1360 324 300 131 101 chr11 101702409 101702502 -20141354 - ID_B1 SINE B4 -17 166 1 6 1360 2771 136 70 9 chr11 101702745 101703199 -20140657 - Lx2B LINE L1 -1 6999 6518 6 1360 860 264 64 36 chr11 101703199 101703419 -20140437 + B4 SINE B4 56 281 -11 6 1360 240 270 214 0 chr11 101703566 101703692 -20140164 + L3 LINE CR1 4334 4486 -3 6 1360 191 349 28 85 chr11 101703844 101703985 -20139871 - MIRc SINE MIR -84 184 52 6 1360 1286 200 5 0 chr11 101704558 101704773 -20139083 + B3 SINE B2 1 216 0 6 1360 245 301 123 123 chr11 101704951 101704996 -20138860 - B3 SINE B2 0 216 10 6 1360 630 273 49 74 chr11 101704996 101705158 -20138698 - RSINE1 SINE B4 0 165 8 6 1360 946 206 4 91 chr11 101705225 101705455 -20138401 + B3 SINE B2 1 210 -6 6 1360 381 298 9 0 chr11 101705543 101705657 -20138199 - PB1D10 SINE Alu -2 115 1 6 1360 451 150 146 29 chr11 101705668 101705771 -20138085 - L1MA5 LINE L1 -33 6267 6153 7 1360 523 263 51 7 chr11 101705970 101706108 -20137748 + LTR52 LTR ERVL 7 150 -271 7 1360 384 300 50 23 chr11 101706316 101706462 -20137394 - MLT1J LTR MaLR -314 198 63 7 1360 5915 138 16 22 chr11 101706482 101706511 -20137345 - RMER19B LTR ERVK 0 902 885 7 1360 1590 43 0 0 chr11 101706511 101706695 -20137161 - B2_Mm1a SINE B2 -8 185 2 7 1360 5915 138 16 22 chr11 101706695 101707572 -20136284 - RMER19B LTR ERVK -18 884 1 7 1360 1341 105 5 0 chr11 101708228 101708419 -20135437 - B2_Mm1t SINE B2 0 193 2 7 1360 483 250 89 32 chr11 101708958 101709115 -20134741 + MLT1J LTR MaLR 103 268 -244 7 1360 530 342 0 0 chr11 101709161 101709316 -20134540 + RSINE1 SINE B4 4 158 -7 7 1360 215 225 0 0 chr11 101709467 101709507 -20134349 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1360 753 259 0 0 chr11 101709517 101709660 -20134196 - RSINE1 SINE B4 -21 144 2 7 1360 547 190 70 0 chr11 101710253 101710353 -20133503 - B1_Mur3 SINE Alu -40 109 3 7 1360 514 279 36 0 chr11 101710413 101710553 -20133303 - RSINE1 SINE B4 -17 148 4 7 1360 185 139 23 0 chr11 101711184 101711227 -20132629 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1360 345 232 0 68 chr11 101711229 101711317 -20132539 - B4 SINE B4 0 292 211 7 1360 794 249 20 40 chr11 101711318 101711519 -20132337 - B3A SINE B2 -1 197 1 7 1360 27 0 0 0 chr11 101711538 101711565 -20132291 + AT_rich Low_complexity Low_complexity 1 27 0 7 1360 598 168 6 11 chr11 101711598 101711779 -20132077 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 21 627 271 29 81 chr11 101711779 101711952 -20131904 - RSINE1 SINE B4 0 165 2 7 1361 658 259 7 0 chr11 101711952 101712097 -20131759 - B4 SINE B4 -65 227 82 7 1361 197 132 26 0 chr11 101712887 101712925 -20130931 + CT-rich Low_complexity Low_complexity 2 40 0 7 1361 297 0 0 0 chr11 101713896 101713929 -20129927 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1361 218 274 92 31 chr11 101713974 101714072 -20129784 + MIRc SINE MIR 82 185 -91 7 1361 976 251 67 39 chr11 101714076 101714358 -20129498 + B4A SINE B4 3 292 0 7 1361 270 180 60 0 chr11 101714358 101714458 -20129398 + (CA)n Simple_repeat Simple_repeat 1 106 0 7 1361 399 239 24 12 chr11 101714453 101714622 -20129234 + (CATA)n Simple_repeat Simple_repeat 4 174 0 7 1361 23 33 0 0 chr11 101714824 101714854 -20129002 + AT_rich Low_complexity Low_complexity 1 30 0 7 1361 396 281 37 103 chr11 101714868 101715137 -20128719 - B4 SINE B4 0 292 54 7 1361 715 236 61 0 chr11 101715146 101715294 -20128562 + ORR1D2 LTR MaLR 1 157 -213 7 1361 652 231 231 9 chr11 101715294 101715524 -20128332 - MT2A LTR ERVL 0 533 252 7 1361 4596 138 71 71 chr11 101715524 101716415 -20127441 + RMER19B LTR ERVK 1 891 -11 7 1361 1072 238 55 16 chr11 101716422 101716678 -20127178 - MT2A LTR ERVL -267 266 1 7 1361 853 190 63 24 chr11 101716678 101716881 -20126975 + ORR1D2 LTR MaLR 153 363 -7 7 1361 313 293 165 6 chr11 101716981 101717139 -20126717 - MIRb SINE MIR -11 257 75 7 1361 428 95 11 35 chr11 101717989 101718076 -20125780 + (TC)n Simple_repeat Simple_repeat 2 86 0 7 1361 446 96 0 14 chr11 101718077 101718151 -20125705 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 1361 587 204 68 121 chr11 101718353 101718559 -20125297 - B3A SINE B2 -2 196 2 7 1361 249 262 7 7 chr11 101718564 101718710 -20125146 - L1M2 LINE L1 -2942 3201 3056 7 1361 1268 20 0 20 chr11 101718980 101719129 -20124727 - B1_Mm SINE Alu 0 147 2 7 1361 550 328 109 33 chr11 101719246 101719520 -20124336 - MER44A DNA MER2_type -21 318 24 7 1361 680 250 22 0 chr11 101719549 101719685 -20124171 + ID_B1 SINE B4 84 222 -2 7 1361 180 344 47 54 chr11 101719685 101719814 -20124042 - MIR3 SINE MIR -79 129 2 7 1361 228 35 0 0 chr11 101720166 101720195 -20123661 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 7 1361 306 67 0 0 chr11 101720428 101720473 -20123383 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1361 441 0 0 0 chr11 101720743 101720792 -20123064 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1361 1287 27 0 0 chr11 101720806 101720953 -20122903 + B1_Mus2 SINE Alu 1 147 0 7 1361 203 273 0 0 chr11 101721020 101721064 -20122792 + CT-rich Low_complexity Low_complexity 1 44 0 7 1361 1166 241 9 0 chr11 101721064 101721284 -20122572 - ID_B1 SINE B4 -1 223 2 7 1361 440 300 7 60 chr11 101721675 101721708 -20122148 + ID_B1 SINE B4 54 194 -30 7 1361 489 241 26 35 chr11 101721708 101721824 -20122032 + B1F SINE Alu 2 116 -33 7 1361 483 259 67 92 chr11 101721965 101722203 -20121653 - MER58D DNA MER1_type -9 377 146 7 1361 21 89 0 0 chr11 101722252 101722308 -20121548 + AT_rich Low_complexity Low_complexity 1 56 0 7 1361 408 250 0 0 chr11 101722316 101722444 -20121412 + (CA)n Simple_repeat Simple_repeat 2 129 0 7 1361 262 247 108 0 chr11 101722448 101722541 -20121315 - PB1D10 SINE Alu -3 114 12 7 1361 245 268 159 23 chr11 101723006 101723094 -20120762 + MLT1A1 LTR MaLR 309 408 0 7 1361 654 285 24 0 chr11 101723145 101723310 -20120546 + B4A SINE B4 1 169 -123 7 1361 371 269 62 17 chr11 101723367 101723527 -20120329 + B4A SINE B4 125 292 0 7 1361 315 0 0 0 chr11 101723528 101723563 -20120293 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1361 556 99 20 10 chr11 101723671 101723773 -20120083 + (TCTCTG)n Simple_repeat Simple_repeat 4 106 0 7 1361 331 295 60 15 chr11 101723914 101724048 -20119808 + L1M4 LINE L1 4443 4582 -1564 7 1361 1219 244 77 143 chr11 101724109 101724216 -20119640 - MTD LTR MaLR -8 411 328 7 1361 996 220 24 9 chr11 101724216 101724427 -20119429 - B3 SINE B2 -1 215 2 7 1361 1219 244 77 143 chr11 101724427 101724444 -20119412 - MTD LTR MaLR -92 327 322 7 1361 705 186 0 58 chr11 101724444 101724598 -20119258 - B1_Mur1 SINE Alu -1 148 4 7 1361 1219 244 77 143 chr11 101724598 101724912 -20118944 - MTD LTR MaLR -98 321 1 7 1361 1357 289 54 47 chr11 101724912 101725411 -20118445 + MLT2B2 LTR ERVL 50 576 -25 7 1361 534 79 25 34 chr11 101725412 101725530 -20118326 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 7 1361 667 311 110 68 chr11 101725588 101725830 -20118026 + L1M4 LINE L1 4579 4822 -1324 7 1361 327 300 9 0 chr11 101725830 101725940 -20117916 + PB1D10 SINE Alu 2 112 -5 7 1361 667 311 110 68 chr11 101725940 101726485 -20117371 + L1M4 LINE L1 4823 5399 -747 7 1361 914 252 83 83 chr11 101726497 101726848 -20117008 + ORR1E LTR MaLR 4 354 -5 7 1361 272 211 0 14 chr11 101726904 101726976 -20116880 + GA-rich Low_complexity Low_complexity 3 73 0 7 1361 503 306 16 22 chr11 101726976 101727122 -20116734 + L1M4 LINE L1 5477 5623 -555 7 1361 885 149 14 0 chr11 101727122 101727270 -20116586 + B1_Mur4 SINE Alu 1 150 0 7 1361 503 306 16 22 chr11 101727270 101727307 -20116549 + L1M4 LINE L1 5624 5659 -519 7 1361 223 245 0 0 chr11 101727322 101727375 -20116481 + CT-rich Low_complexity Low_complexity 2 54 0 7 1361 640 229 28 7 chr11 101727386 101727531 -20116325 - B1_Mur1 SINE Alu 0 149 2 7 1361 257 248 201 8 chr11 101727533 101727599 -20116257 + L1M4 LINE L1 5627 5693 -485 7 1361 378 0 0 0 chr11 101727599 101727641 -20116215 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1361 257 248 201 8 chr11 101727641 101727708 -20116148 + L1M4 LINE L1 5694 5785 -393 7 1361 229 282 40 127 chr11 101727708 101727858 -20115998 + MT2B LTR ERVL 98 234 -367 7 1361 261 269 42 31 chr11 101727780 101727876 -20115980 + ID_B1 SINE B4 80 176 -48 7 1361 320 222 21 53 chr11 101727805 101727900 -20115956 + PB1D10 SINE Alu 26 117 0 7 1361 305 338 0 0 chr11 101727960 101728034 -20115822 - B4 SINE B4 -3 289 216 7 1361 192 97 0 0 chr11 101728044 101728075 -20115781 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1361 755 210 19 19 chr11 101728078 101728238 -20115618 - B3A SINE B2 -38 160 1 7 1361 633 313 9 69 chr11 101728238 101728469 -20115387 - B4 SINE B4 -65 227 11 7 1361 205 214 89 0 chr11 101729616 101729672 -20114184 + MIR3 SINE MIR 120 180 -28 7 1361 331 227 0 0 chr11 101729783 101729849 -20114007 - B4A SINE B4 -4 288 223 7 1361 1061 95 0 13 chr11 101729849 101729999 -20113857 + B1_Mus1 SINE Alu 1 148 0 7 1361 542 103 11 0 chr11 101730005 101730092 -20113764 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 7 1361 261 0 0 0 chr11 101730092 101730121 -20113735 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1361 345 24 0 0 chr11 101730231 101730273 -20113583 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7 1361 1277 31 0 0 chr11 101730273 101730433 -20113423 - B2_Mm1a SINE B2 -33 160 1 7 1361 228 258 92 127 chr11 101730434 101730576 -20113280 - B1F SINE Alu -12 137 1 7 1361 300 266 0 130 chr11 101730473 101730581 -20113275 - B4A SINE B4 -118 174 81 7 1361 1009 158 152 0 chr11 101730655 101730839 -20113017 - B3 SINE B2 -4 212 1 7 1361 426 308 123 60 chr11 101732282 101732517 -20111339 - B4 SINE B4 -2 290 41 7 1361 411 267 40 14 chr11 101733699 101733847 -20110009 - RSINE1 SINE B4 -11 154 3 7 1361 808 125 23 0 chr11 101733867 101733995 -20109861 - B1_Mur1 SINE Alu 0 149 19 7 1361 237 65 0 0 chr11 101734014 101734045 -20109811 + (CTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1361 222 233 58 126 chr11 101734242 101734345 -20109511 + PB1D10 SINE Alu 21 116 -1 7 1361 399 193 0 0 chr11 101734400 101734483 -20109373 + G-rich Low_complexity Low_complexity 5 87 0 7 1361 239 232 1 30 chr11 101734702 101734778 -20109078 - MIRm SINE MIR -141 135 56 7 1361 504 93 0 0 chr11 101734818 101734893 -20108963 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1361 243 292 0 0 chr11 101735908 101736014 -20107842 + (TCCA)n Simple_repeat Simple_repeat 4 109 0 7 1361 246 309 32 0 chr11 101736020 101736114 -20107742 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 7 1361 412 292 136 0 chr11 101736520 101736667 -20107189 + MTEa LTR MaLR 7 173 -206 7 1361 597 72 0 0 chr11 101736761 101736844 -20107012 + (TCC)n Simple_repeat Simple_repeat 1 83 0 7 1361 901 127 0 0 chr11 101736845 101736979 -20106877 - B1_Mus1 SINE Alu -13 135 2 7 1361 429 20 0 0 chr11 101737141 101737191 -20106665 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1361 589 265 11 3 chr11 101737204 101737352 -20106504 - ID_B1 SINE B4 -1 223 83 7 1361 315 0 0 0 chr11 101737641 101737676 -20106180 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1361 737 232 0 27 chr11 101737676 101737822 -20106034 - RSINE1 SINE B4 -20 145 4 7 1361 941 192 0 43 chr11 101737899 101738084 -20105772 - B3 SINE B2 -8 208 32 8 1361 1267 115 16 0 chr11 101738092 101738284 -20105572 - B2_Mm2 SINE B2 0 195 1 8 1361 480 35 0 0 chr11 101738300 101738358 -20105498 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1361 243 229 0 0 chr11 101738371 101738419 -20105437 - B4 SINE B4 -74 218 171 8 1361 222 171 0 0 chr11 101738480 101738521 -20105335 + GA-rich Low_complexity Low_complexity 2 42 0 8 1361 424 194 281 7 chr11 101738526 101738661 -20105195 - B3A SINE B2 -26 172 1 8 1361 281 242 11 0 chr11 101741335 101741426 -20102430 + (TG)n Simple_repeat Simple_repeat 1 92 0 8 1361 305 291 0 0 chr11 101741430 101741509 -20102347 - B4A SINE B4 0 292 214 8 1361 630 37 0 0 chr11 101741512 101741593 -20102263 + (TATG)n Simple_repeat Simple_repeat 3 83 0 8 1361 423 336 9 0 chr11 101741598 101741714 -20102142 - RSINE1 SINE B4 -47 118 2 8 1361 856 256 8 48 chr11 101741714 101741953 -20101903 - B4A SINE B4 -63 229 1 8 1361 241 263 18 0 chr11 101742304 101742361 -20101495 - MIR SINE MIR -171 91 34 8 1361 478 317 0 20 chr11 101743523 101743671 -20100185 - ID_B1 SINE B4 0 224 80 8 1361 714 205 87 31 chr11 101744950 101745146 -20098710 - B3 SINE B2 -9 207 1 8 1361 422 150 18 45 chr11 101745499 101745611 -20098245 + G-rich Low_complexity Low_complexity 1 109 0 8 1361 626 137 27 44 chr11 101745631 101745814 -20098042 + GA-rich Low_complexity Low_complexity 1 180 0 8 1361 212 263 34 8 chr11 101745800 101745919 -20097937 + G-rich Low_complexity Low_complexity 4 125 0 8 1361 474 65 0 0 chr11 101746311 101746373 -20097483 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 8 1361 262 322 103 0 chr11 101746384 101746471 -20097385 - B1F SINE Alu -38 111 16 8 1361 258 295 26 0 chr11 101747089 101747167 -20096689 - ID4 SINE ID -1 82 3 8 1361 906 279 154 40 chr11 101748807 101749152 -20094704 + L1MB2 LINE L1 4532 4921 -1219 8 1361 306 0 0 0 chr11 101749152 101749186 -20094670 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1361 906 279 154 40 chr11 101749186 101749385 -20094471 + L1MB2 LINE L1 4922 5138 -1002 8 1361 270 238 16 0 chr11 101749409 101749472 -20094384 + RSINE1 SINE B4 61 124 -41 8 1361 435 262 0 23 chr11 101749538 101749667 -20094189 + L1MB2 LINE L1 5478 5603 -580 8 1361 462 283 6 132 chr11 101749671 101749838 -20094018 + B3A SINE B2 1 146 -49 8 1361 315 0 0 0 chr11 101749840 101749875 -20093981 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1361 662 314 87 82 chr11 101749881 101750453 -20093403 + L1MB2 LINE L1 5597 6171 0 8 1361 387 0 0 0 chr11 101751684 101751727 -20092129 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 8 1361 547 303 58 43 chr11 101751727 101751926 -20091930 - ID_B1 SINE B4 -14 210 8 8 1361 903 132 0 7 chr11 101751963 101752108 -20091748 - URR1A DNA MER1_type 0 226 83 8 1361 455 234 55 42 chr11 101752108 101752119 -20091737 + CYRA11_Mm Unknown Y-chromosome 227 329 -288 8 1361 347 260 105 9 chr11 101752385 101752490 -20091366 + ID_B1 SINE B4 110 224 0 8 1361 296 318 0 0 chr11 101753494 101753579 -20090277 - PB1D10 SINE Alu -32 85 1 8 1361 200 222 0 0 chr11 101754179 101754224 -20089632 + CT-rich Low_complexity Low_complexity 1 45 0 8 1361 189 0 0 0 chr11 101754695 101754716 -20089140 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1361 27 0 0 0 chr11 101755382 101755409 -20088447 + AT_rich Low_complexity Low_complexity 1 27 0 8 1361 369 0 0 0 chr11 101755941 101755982 -20087874 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1361 402 79 0 0 chr11 101756240 101756303 -20087553 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1361 1105 176 18 13 chr11 101756778 101757002 -20086854 - URR1B DNA MER1_type 0 225 1 8 1361 184 299 143 0 chr11 101757298 101757375 -20086481 - MIR SINE MIR -134 128 41 8 1361 21 36 0 0 chr11 101757405 101757433 -20086423 + AT_rich Low_complexity Low_complexity 1 28 0 8 1361 1011 101 0 0 chr11 101757522 101757660 -20086196 - B1_Mur2 SINE Alu -7 142 5 8 1361 268 274 13 40 chr11 101757695 101757771 -20086085 - B4A SINE B4 -82 210 137 8 1361 225 94 0 0 chr11 101759020 101759052 -20084804 + (CACCAT)n Simple_repeat Simple_repeat 5 36 0 8 1361 723 266 57 21 chr11 101759088 101759368 -20084488 - B4 SINE B4 -2 290 1 8 1361 305 328 57 8 chr11 101759408 101759531 -20084325 + MIRm SINE MIR 29 157 -119 8 1361 1628 150 139 12 chr11 101759612 101759942 -20083914 - ORR1C2 LTR MaLR -1 383 12 8 1361 608 73 0 18 chr11 101760224 101760325 -20083531 - B1_Mur4 SINE Alu 0 150 30 8 1361 1372 69 11 0 chr11 101760396 101760584 -20083272 + B2_Mm1t SINE B2 2 191 -2 8 1361 852 88 22 0 chr11 101760613 101760749 -20083107 + (GA)n Simple_repeat Simple_repeat 1 139 0 8 1361 821 175 0 0 chr11 101761075 101761212 -20082644 - B1_Mur2 SINE Alu -12 137 1 8 1361 895 193 88 44 chr11 101761403 101761631 -20082225 - RMER10A LTR ERVL -204 238 1 8 1361 1023 189 0 0 chr11 101761631 101761816 -20082040 - B3 SINE B2 -31 185 1 8 1361 308 319 64 40 chr11 101762118 101762161 -20081695 - MER53 DNA hAT -6 187 147 8 1361 1336 93 0 15 chr11 101762161 101762358 -20081498 + B2_Mm2 SINE B2 2 195 0 8 1361 308 319 64 40 chr11 101762358 101762487 -20081369 - MER53 DNA hAT -47 146 12 8 1361 855 131 0 0 chr11 101763209 101763346 -20080510 + (TTTCC)n Simple_repeat Simple_repeat 2 138 0 8 1361 438 139 0 0 chr11 101763338 101763410 -20080446 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1361 972 74 0 29 chr11 101763410 101763549 -20080307 - B1_Mus1 SINE Alu 0 148 14 8 1361 475 246 32 124 chr11 101763423 101763609 -20080247 - B4 SINE B4 -75 217 49 8 1361 410 305 25 38 chr11 101763648 101763808 -20080048 - RSINE1 SINE B4 -6 159 2 8 1361 768 168 0 0 chr11 101763889 101764014 -20079842 + B1_Mur1 SINE Alu 25 149 0 8 1361 471 239 17 17 chr11 101764051 101764166 -20079690 + PB1D10 SINE Alu 3 117 0 8 1361 180 0 0 0 chr11 101764311 101764331 -20079525 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1361 180 279 116 0 chr11 101764450 101764493 -20079363 - L2 LINE L2 -3307 112 65 8 1361 195 197 24 0 chr11 101765160 101765213 -20078643 - MIR SINE MIR -64 144 90 8 1361 378 0 0 0 chr11 101765890 101765932 -20077924 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1361 360 0 0 0 chr11 101765932 101765972 -20077884 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1361 442 245 19 19 chr11 101766137 101766241 -20077615 - PB1D10 SINE Alu -2 115 12 8 1361 1170 54 0 0 chr11 101766249 101766396 -20077460 - B1_Mm SINE Alu 0 147 1 8 1361 405 0 0 0 chr11 101766983 101767028 -20076828 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1361 333 0 0 0 chr11 101767229 101767266 -20076590 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1361 242 265 104 38 chr11 101767482 101767588 -20076268 - B1_Mur3 SINE Alu -36 113 1 8 1361 601 177 40 0 chr11 101767588 101767624 -20076232 - B4 SINE B4 -202 90 50 8 1361 736 274 142 42 chr11 101768294 101768603 -20075253 + MTE2a LTR MaLR 40 379 0 8 1361 259 278 14 0 chr11 101768909 101768981 -20074875 + MIRb SINE MIR 51 123 -145 8 1361 788 212 0 4 chr11 101769404 101769658 -20074198 + (TG)n Simple_repeat Simple_repeat 1 252 0 8 1361 815 138 9 26 chr11 101769649 101769888 -20073968 + (TATG)n Simple_repeat Simple_repeat 1 234 0 8 1361 512 148 0 8 chr11 101770492 101770615 -20073241 + CT-rich Low_complexity Low_complexity 2 123 0 8 1361 459 0 0 0 chr11 101770615 101770666 -20073190 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1361 481 193 23 0 chr11 101770685 101770791 -20073065 - B1F SINE Alu -1 119 11 8 1361 228 103 34 17 chr11 101771297 101771356 -20072500 + T-rich Low_complexity Low_complexity 1 60 0 8 1361 843 157 6 17 chr11 101772552 101772733 -20071123 + GA-rich Low_complexity Low_complexity 1 179 0 8 1361 185 196 0 21 chr11 101773157 101773204 -20070652 + (CACG)n Simple_repeat Simple_repeat 1 46 0 8 1361 228 268 223 0 chr11 101773931 101774043 -20069813 - MIRc SINE MIR -85 183 47 8 1361 319 283 4 50 chr11 101776352 101776503 -20067353 - PB1D10 SINE Alu -8 141 2 8 1361 471 78 0 0 chr11 101777387 101777451 -20066405 + (TCCA)n Simple_repeat Simple_repeat 4 67 0 8 1361 315 132 0 0 chr11 101777529 101777597 -20066259 + (TC)n Simple_repeat Simple_repeat 2 69 0 8 1361 391 18 36 0 chr11 101777609 101777665 -20066191 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1361 400 287 8 39 chr11 101777745 101777772 -20066084 + ID SINE ID 57 79 -145 8 1361 527 208 10 0 chr11 101777772 101777873 -20065983 + B1F1 SINE Alu 1 102 -47 8 1361 550 244 0 16 chr11 101777898 101778019 -20065837 + ID_B1 SINE B4 105 223 -1 8 1361 260 352 34 27 chr11 101778220 101778366 -20065490 - MER5B DNA MER1_type -5 173 27 8 1361 762 43 0 0 chr11 101778563 101778657 -20065199 + (TCC)n Simple_repeat Simple_repeat 3 96 0 8 1361 927 150 0 0 chr11 101778665 101778812 -20065044 - B1_Mus2 SINE Alu 0 147 1 8 1361 526 7 132 0 chr11 101779308 101779459 -20064397 + (CAGG)n Simple_repeat Simple_repeat 2 172 0 8 1361 2104 131 12 20 chr11 101779787 101780131 -20063725 - ORR1B1 LTR MaLR 0 394 54 8 1361 183 225 0 24 chr11 101781374 101781415 -20062441 - L3 LINE CR1 -2 4487 4448 8 1361 286 267 93 0 chr11 101781477 101781563 -20062293 + MIR SINE MIR 83 176 -86 8 1361 225 258 51 9 chr11 101781616 101781735 -20062121 - MIRc SINE MIR -129 147 21 8 1361 387 0 0 0 chr11 101781736 101781779 -20062077 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1361 301 202 0 71 chr11 101781789 101781874 -20061982 - B4 SINE B4 0 292 214 8 1361 209 262 16 0 chr11 101781876 101781937 -20061919 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1361 362 228 58 29 chr11 101782091 101782195 -20061661 - B4 SINE B4 -51 241 135 8 1361 811 104 72 0 chr11 101783900 101784025 -20059831 + B1_Mus1 SINE Alu 15 148 0 8 1361 272 282 34 34 chr11 101784056 101784144 -20059712 + RSINE1 SINE B4 6 93 -72 9 1361 342 0 0 0 chr11 101784170 101784208 -20059648 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1361 1086 142 0 11 chr11 101784428 101784452 -20059404 - B2_Mm2 SINE B2 -19 176 154 9 1361 191 36 0 35 chr11 101784452 101784481 -20059375 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 9 1361 1086 142 0 11 chr11 101784481 101784634 -20059222 - B2_Mm2 SINE B2 -42 153 1 9 1361 615 249 30 94 chr11 101784673 101784908 -20058948 + ID_B1 SINE B4 3 222 -2 9 1361 430 237 35 9 chr11 101785091 101785206 -20058650 - PB1D9 SINE Alu -1 119 2 9 1361 469 234 18 18 chr11 101785214 101785327 -20058529 - PB1D10 SINE Alu 0 117 5 9 1361 236 279 44 42 chr11 101785931 101786038 -20057818 + L2a LINE L2 3020 3127 -299 9 1361 303 320 138 72 chr11 101787342 101787537 -20056319 + B4A SINE B4 10 217 -75 9 1361 534 138 28 39 chr11 101787666 101787847 -20056009 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1361 234 0 0 0 chr11 101788426 101788452 -20055404 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1361 216 86 0 0 chr11 101789218 101789253 -20054603 + (C)n Simple_repeat Simple_repeat 1 35 0 9 1361 357 191 15 0 chr11 101790071 101790139 -20053717 + ID_B1 SINE B4 156 224 0 9 1361 802 114 16 0 chr11 101790408 101790531 -20053325 + B2_Mm1a SINE B2 3 127 -66 9 1361 291 146 0 35 chr11 101790555 101790612 -20053244 + B2_Mm2 SINE B2 47 101 -94 9 1361 662 259 124 0 chr11 101790688 101790873 -20052983 + ID_B1 SINE B4 9 216 -8 9 1361 281 297 40 40 chr11 101790743 101790894 -20052962 - YREP_Mm Unknown Unknown -1499 313 163 9 1361 254 200 0 18 chr11 101791848 101791904 -20051952 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 9 1361 343 313 50 65 chr11 101791906 101792227 -20051629 - L1MEd LINE L1 -4999 1120 805 9 1361 293 0 27 0 chr11 101792227 101792264 -20051592 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 9 1361 258 245 65 56 chr11 101792285 101792393 -20051463 - PB1D10 SINE Alu -8 109 1 9 1361 260 256 32 95 chr11 101792393 101792488 -20051368 + MIRb SINE MIR 108 196 -72 9 1361 694 246 50 30 chr11 101792871 101793072 -20050784 + ID_B1 SINE B4 1 205 -19 9 1361 351 0 0 0 chr11 101793075 101793114 -20050742 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 9 1361 209 288 123 0 chr11 101793237 101793310 -20050546 - MIRb SINE MIR -161 107 26 9 1361 213 241 0 0 chr11 101794054 101794108 -20049748 + CT-rich Low_complexity Low_complexity 3 56 0 9 1361 862 148 0 53 chr11 101794110 101794260 -20049596 - B1_Mur4 SINE Alu -6 144 3 9 1361 328 227 13 13 chr11 101794268 101794344 -20049512 + MIR SINE MIR 44 119 -143 9 1361 362 198 0 131 chr11 101794917 101795039 -20048817 + RMER30 DNA MER1_type 9 114 -88 9 1361 1015 231 67 35 chr11 101795064 101795347 -20048509 - B4A SINE B4 0 292 1 9 1361 340 261 11 11 chr11 101795354 101795443 -20048413 + RMER30 DNA MER1_type 109 197 -5 9 1361 530 239 7 0 chr11 101795917 101796072 -20047784 + (TA)n Simple_repeat Simple_repeat 2 157 0 9 1361 273 159 14 0 chr11 101796132 101796201 -20047655 + MT2A LTR ERVL 464 533 0 9 1361 288 0 0 0 chr11 101796445 101796477 -20047379 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1361 658 140 0 0 chr11 101796608 101796715 -20047141 + B1_Mur4 SINE Alu 31 137 -13 9 1361 255 31 0 0 chr11 101796715 101796747 -20047109 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1361 564 340 4 45 chr11 101797192 101797457 -20046399 + L1M5 LINE L1 5549 5802 -322 9 1361 597 223 169 5 chr11 101797513 101797702 -20046154 + ID_B1 SINE B4 5 224 0 9 1361 1200 281 89 16 chr11 101797750 101798198 -20045658 + Lx8 LINE L1 6991 7471 -2 9 1361 234 213 0 0 chr11 101798275 101798288 -20045568 + (TG)n Simple_repeat Simple_repeat 2 14 0 9 1361 183 80 0 0 chr11 101798288 101798313 -20045543 + (CG)n Simple_repeat Simple_repeat 2 26 0 9 1361 234 213 0 0 chr11 101798313 101798360 -20045496 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1361 29 84 0 0 chr11 101798661 101798732 -20045124 + GC_rich Low_complexity Low_complexity 1 71 0 9 1361 195 229 82 0 chr11 101799337 101799398 -20044458 + L2a LINE L2 3098 3163 -224 9 1361 236 290 118 37 chr11 101799913 101800074 -20043782 - MIRb SINE MIR -15 253 80 9 1361 252 273 45 0 chr11 101801296 101801362 -20042494 + L2a LINE L2 3335 3403 -23 9 1361 461 295 82 34 chr11 101801512 101801719 -20042137 - ID_B1 SINE B4 -6 218 2 9 1361 180 111 0 0 chr11 101801886 101801913 -20041943 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 9 1361 333 0 0 0 chr11 101802136 101802173 -20041683 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1361 324 0 0 0 chr11 101802173 101802208 -20041648 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1361 227 268 42 0 chr11 101802239 101802310 -20041546 - MamGypLTR2b LTR Gypsy -80 842 769 9 1361 302 265 59 30 chr11 101802800 101802901 -20040955 + PB1D10 SINE Alu 2 105 -12 9 1361 198 0 0 0 chr11 101802901 101802923 -20040933 + (CAAAC)n Simple_repeat Simple_repeat 3 24 0 9 1361 251 338 103 22 chr11 101802923 101802938 -20040918 + ID_B1 SINE B4 78 137 -87 9 1361 365 238 92 125 chr11 101802938 101802983 -20040873 + PB1 SINE Alu 12 56 -71 9 1361 1116 68 0 0 chr11 101802983 101803129 -20040727 + B1_Mm SINE Alu 2 147 0 9 1361 365 238 92 125 chr11 101803129 101803203 -20040653 + PB1 SINE Alu 57 127 0 9 1361 491 281 59 0 chr11 101803293 101803428 -20040428 - ID_B1 SINE B4 0 224 82 9 1361 641 271 46 73 chr11 101803549 101803808 -20040048 + B4 SINE B4 41 292 0 9 1361 201 74 0 0 chr11 101804408 101804435 -20039421 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 9 1361 378 0 0 0 chr11 101804744 101804786 -20039070 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1361 972 250 0 0 chr11 101804786 101804974 -20038882 - B3 SINE B2 -28 188 1 9 1361 1484 42 5 10 chr11 101805022 101805214 -20038642 + B2_Mm2 SINE B2 1 191 -4 9 1361 224 303 40 0 chr11 101805323 101805399 -20038457 + ID4_ SINE ID 1 79 -4 9 1361 270 0 0 0 chr11 101805506 101805536 -20038320 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 9 1361 1688 156 95 14 chr11 101805899 101806245 -20037611 + ORR1D1 LTR MaLR 1 374 0 9 1361 731 288 120 35 chr11 101806246 101806271 -20037585 - L1MB7 LINE L1 -95 6089 6068 9 1361 1532 123 140 40 chr11 101806271 101806513 -20037343 + RMER17C LTR ERVK 2 250 -160 9 1361 603 21 95 0 chr11 101806513 101806608 -20037248 + (CTATA)n Simple_repeat Simple_repeat 1 104 0 9 1361 1532 123 140 40 chr11 101806608 101806737 -20037119 + RMER17C LTR ERVK 251 410 0 9 1361 731 291 116 35 chr11 101806737 101807168 -20036688 - L1MB7 LINE L1 -117 6067 5595 9 1361 465 168 5 48 chr11 101807206 101807394 -20036462 + (TCTG)n Simple_repeat Simple_repeat 1 180 0 9 1361 798 312 8 0 chr11 101807519 101807766 -20036090 - Lx8 LINE L1 -153 7320 7072 9 1361 395 285 56 16 chr11 101807775 101807900 -20035956 - RMER10B LTR ERVL 0 398 269 9 1361 270 222 15 60 chr11 101808233 101808300 -20035556 - Lx8 LINE L1 -450 7023 6960 9 1361 25 0 0 0 chr11 101808315 101808340 -20035516 + AT_rich Low_complexity Low_complexity 1 25 0 9 1361 209 33 0 32 chr11 101808370 101808401 -20035455 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 9 1361 1127 57 0 0 chr11 101808403 101808544 -20035312 - B1_Mus2 SINE Alu -6 141 1 9 1361 335 100 20 0 chr11 101808597 101808647 -20035209 + tRNA-Lys-AAG tRNA tRNA 26 76 0 9 1361 772 197 29 40 chr11 101808669 101808848 -20035008 - B3 SINE B2 -13 203 28 9 1361 929 225 191 31 chr11 101808972 101809297 -20034559 - MTEa LTR MaLR -1 378 2 9 1361 1098 68 7 0 chr11 101809338 101809484 -20034372 - B1_Mus1 SINE Alu -1 147 1 9 1361 328 297 85 16 chr11 101809496 101809684 -20034172 - Cheshire DNA MER1_type -110 2310 2110 9 1361 462 276 308 40 chr11 101810560 101810788 -20033068 + B4A SINE B4 2 291 -1 9 1361 885 41 187 0 chr11 101811213 101811336 -20032520 + B1_Mus2 SINE Alu 2 147 0 9 1361 516 68 0 0 chr11 101812416 101812489 -20031367 + (CCA)n Simple_repeat Simple_repeat 2 74 0 9 1361 252 111 0 0 chr11 101813198 101813243 -20030613 + (TATG)n Simple_repeat Simple_repeat 2 46 0 9 1361 730 216 246 5 chr11 101813299 101813533 -20030323 - B4A SINE B4 -2 290 2 9 1361 418 291 155 30 chr11 101814732 101814925 -20028931 - B4A SINE B4 -16 276 60 9 1361 226 272 53 21 chr11 101815005 101815099 -20028757 - MLT1A1 LTR MaLR 0 408 312 9 1361 671 270 7 7 chr11 101815368 101815517 -20028339 - RSINE1 SINE B4 -14 151 3 9 1361 308 167 0 0 chr11 101815678 101815732 -20028124 + B3A SINE B2 1 54 -144 9 1361 638 236 29 0 chr11 101815739 101815879 -20027977 - B3 SINE B2 -68 148 5 9 1361 228 35 0 0 chr11 101816380 101816409 -20027447 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1361 576 222 61 108 chr11 101816555 101816767 -20027089 + B3 SINE B2 1 202 -14 9 1361 360 0 0 0 chr11 101816800 101816840 -20027016 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1361 502 226 9 9 chr11 101816841 101816948 -20026908 - PB1D9 SINE Alu -13 107 1 9 1361 429 264 0 0 chr11 101816990 101817096 -20026760 - B1_Mur2 SINE Alu -1 148 43 9 1361 402 21 0 0 chr11 101817775 101817822 -20026034 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1361 233 240 16 0 chr11 101818626 101818747 -20025109 + ORR1B1-int LTR MaLR 632 754 -755 9 1361 1016 70 0 0 chr11 101818644 101818778 -20025078 + B1_Mus1 SINE Alu 6 139 -9 9 1361 195 69 0 0 chr11 101818778 101818807 -20025049 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 9 1361 260 173 19 0 chr11 101818815 101818867 -20024989 + MTE2b LTR MaLR 326 378 -1 9 1361 1096 282 17 11 chr11 101819846 101820133 -20023723 + B4 SINE B4 1 289 -3 9 1361 939 141 0 7 chr11 101820469 101820619 -20023237 - B1_Mur4 SINE Alu 0 150 2 9 1361 1069 198 0 24 chr11 101820999 101821206 -20022650 + B3 SINE B2 9 210 -6 1 1361 408 40 0 0 chr11 101821613 101821663 -20022193 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1361 258 57 37 19 chr11 101821901 101821955 -20021901 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 1 1361 222 250 78 0 chr11 101822691 101822755 -20021101 + ID4_ SINE ID 2 70 -13 1 1361 180 0 0 0 chr11 101822859 101822879 -20020977 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1361 325 273 101 0 chr11 101822900 101822999 -20020857 - PB1D7 SINE Alu -10 110 2 1 1361 21 0 0 0 chr11 101825199 101825220 -20018636 + GC_rich Low_complexity Low_complexity 1 21 0 1 1361 23 0 0 0 chr11 101825336 101825359 -20018497 + GC_rich Low_complexity Low_complexity 1 23 0 1 1361 272 213 89 17 chr11 101825757 101825851 -20018005 + MIR SINE MIR 54 151 -117 1 1361 474 224 254 40 chr11 101825923 101826100 -20017756 - ID_B1 SINE B4 -8 216 2 1 1361 22 0 0 0 chr11 101826381 101826403 -20017453 + GC_rich Low_complexity Low_complexity 1 22 0 1 1361 204 237 0 0 chr11 101826560 101826598 -20017258 - L2b LINE L2 -13 3362 3325 1 1361 278 235 14 14 chr11 101828896 101828965 -20014891 - ID2 SINE ID -13 70 2 1 1361 787 238 139 8 chr11 101829276 101829534 -20014322 - B4A SINE B4 0 292 1 1 1361 1547 26 21 0 chr11 101830616 101830805 -20013051 - B2_Mm1t SINE B2 0 193 1 1 1361 198 0 0 0 chr11 101830973 101830995 -20012861 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 1361 348 296 0 34 chr11 101831053 101831172 -20012684 - PB1D10 SINE Alu 0 117 3 1 1361 250 284 84 63 chr11 101831184 101831327 -20012529 - L1MD1 LINE L1 0 6242 6097 1 1361 226 274 103 47 chr11 101831498 101831605 -20012251 - PB1D10 SINE Alu -1 116 4 1 1361 269 306 52 52 chr11 101831646 101831801 -20012055 - L1MD1 LINE L1 -241 6001 5847 1 1361 552 278 20 25 chr11 101831807 101832003 -20011853 - L1MC1 LINE L1 -249 6084 5890 1 1361 545 251 128 22 chr11 101832045 101832224 -20011632 - B3A SINE B2 0 198 1 1 1361 264 252 167 26 chr11 101832262 101832376 -20011480 + ID_B1 SINE B4 87 216 -8 1 1361 898 116 65 0 chr11 101833786 101833924 -20009932 + B1_Mus1 SINE Alu 1 147 -1 1 1361 420 263 44 0 chr11 101833956 101834070 -20009786 - B1F2 SINE Alu -30 119 1 1 1361 189 94 0 0 chr11 101834081 101834113 -20009743 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1361 243 0 0 0 chr11 101834264 101834291 -20009565 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1361 261 0 0 0 chr11 101835231 101835260 -20008596 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1361 542 55 0 0 chr11 101836455 101836528 -20007328 - B2_Mm2 SINE B2 -122 73 1 1 1361 337 260 96 0 chr11 101836574 101836678 -20007178 + RSINE1 SINE B4 9 122 -43 1 1361 284 28 0 0 chr11 101836681 101836717 -20007139 + tRNA-Phe-TTY tRNA tRNA 2 37 -39 1 1361 349 288 15 92 chr11 101836810 101836940 -20006916 + PB1D7 SINE Alu 1 120 0 1 1361 673 237 7 19 chr11 101836945 101837100 -20006756 + RSINE1 SINE B4 11 163 -2 1 1361 239 371 28 33 chr11 101837100 101837126 -20006730 + B3 SINE B2 10 189 -27 1 1361 337 273 76 62 chr11 101837197 101837324 -20006532 + L1ME3A LINE L1 5935 6054 -119 1 1361 1288 37 135 0 chr11 101837324 101837487 -20006369 - B2_Mm2 SINE B2 -10 185 1 1 1361 337 273 76 62 chr11 101837487 101837570 -20006286 + L1ME3A LINE L1 6055 6148 -25 1 1361 337 325 0 50 chr11 101837572 101837692 -20006164 + ID_B1 SINE B4 60 173 -51 1 1361 431 220 0 74 chr11 101837609 101837717 -20006139 + PB1D10 SINE Alu 16 115 -2 1 1361 784 229 55 11 chr11 101837799 101837980 -20005876 + B3A SINE B2 8 196 -2 1 1361 233 377 73 34 chr11 101838126 101838332 -20005524 + L1ME1 LINE L1 5961 6174 -5 1 1361 967 208 14 9 chr11 101838332 101838546 -20005310 + B3 SINE B2 2 216 0 1 1361 684 45 0 0 chr11 101838753 101838841 -20005015 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1361 306 194 0 65 chr11 101839301 101839378 -20004478 + B1F1 SINE Alu 78 149 0 1 1361 814 313 17 28 chr11 101840148 101840437 -20003419 - B4A SINE B4 -6 286 1 1 1361 495 164 207 0 chr11 101841107 101841223 -20002633 + MYSERV16_I-int LTR ERVK 475 614 -1712 1 1361 1984 156 35 11 chr11 101841225 101841594 -20002262 - MYSERV16_I-int LTR ERVK -1765 561 184 1 1361 1788 140 70 3 chr11 101841594 101841830 -20002026 + RLTR20A LTR ERVK 199 438 -103 1 1361 351 0 0 0 chr11 101841830 101841869 -20001987 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1361 1788 140 70 3 chr11 101841869 101841948 -20001908 + RLTR20A LTR ERVK 439 534 -7 1 1361 951 274 46 28 chr11 101842372 101842657 -20001199 + B4A SINE B4 3 292 0 1 1361 424 276 16 16 chr11 101842769 101842894 -20000962 + ORR1E LTR MaLR 14 138 -221 1 1362 245 269 0 85 chr11 101843496 101843510 -20000346 + MT2B2 LTR ERVL 154 157 -427 1 1362 398 246 45 12 chr11 101843510 101843628 -20000228 + B1F2 SINE Alu 1 117 0 1 1362 443 307 39 19 chr11 101843635 101843791 -20000065 + MIR SINE MIR 26 184 -78 1 1362 247 320 10 14 chr11 101843863 101843966 -19999890 + L2a LINE L2 3276 3425 -1 1 1362 1325 70 35 6 chr11 101847013 101847186 -19996670 + B2_Mm1t SINE B2 2 179 -14 1 1362 233 322 67 0 chr11 101847311 101847401 -19996455 + ID_B1 SINE B4 1 96 -128 1 1362 583 250 44 0 chr11 101847715 101847851 -19996005 - ID_B1 SINE B4 -1 223 82 1 1362 544 301 21 21 chr11 101848853 101849046 -19994810 - ID_B1 SINE B4 -8 216 24 1 1362 1175 56 0 0 chr11 101849388 101849530 -19994326 - B1_Mus1 SINE Alu -6 142 1 1 1362 191 170 0 21 chr11 101849885 101849933 -19993923 + CT-rich Low_complexity Low_complexity 6 52 0 1 1362 405 0 0 0 chr11 101851232 101851277 -19992579 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1362 631 159 76 38 chr11 101851284 101851415 -19992441 - B1_Mur4 SINE Alu 0 150 15 1 1362 279 242 18 144 chr11 101851319 101851430 -19992426 - MT2B LTR ERVL -343 258 162 1 1362 936 198 10 20 chr11 101851431 101851627 -19992229 - B2_Mm2 SINE B2 0 195 2 1 1362 251 206 132 40 chr11 101852548 101852624 -19991232 + PB1 SINE Alu 43 125 -2 1 1362 275 276 115 0 chr11 101853056 101853143 -19990713 + RSINE1 SINE B4 12 108 -57 1 1362 228 358 59 54 chr11 101853380 101853566 -19990290 - RMER21A LTR ERV1 -208 739 553 1 1362 316 383 0 0 chr11 101853606 101853734 -19990122 + (TG)n Simple_repeat Simple_repeat 1 128 0 1 1362 828 229 169 20 chr11 101853738 101853992 -19989864 - B4A SINE B4 0 292 1 1 1362 252 273 71 18 chr11 101853995 101854107 -19989749 - PB1 SINE Alu -3 124 7 1 1362 824 233 11 0 chr11 101854009 101854189 -19989667 - ID_B1 SINE B4 -38 186 5 1 1362 481 271 28 7 chr11 101854352 101854493 -19989363 - L1MDa LINE L1 -3285 3252 3109 1 1362 244 250 21 134 chr11 101854514 101854545 -19989311 - L1M5 LINE L1 -3570 2576 2547 1 1362 1351 92 22 0 chr11 101854545 101854729 -19989127 + B2_Mm2 SINE B2 1 188 -7 1 1362 244 250 21 134 chr11 101854729 101854794 -19989062 - L1M5 LINE L1 -3600 2546 2491 1 1362 616 269 35 23 chr11 101854799 101854970 -19988886 - B3A SINE B2 -5 193 21 1 1362 501 281 16 38 chr11 101854974 101855159 -19988697 - L1MDa LINE L1 -3642 2895 2715 1 1362 701 291 65 15 chr11 101855212 101855474 -19988382 - B4 SINE B4 -16 276 2 1 1362 252 319 166 72 chr11 101855647 101855975 -19987881 - L1MDa LINE L1 -4597 2036 1659 1 1362 2762 70 36 41 chr11 101855975 101856363 -19987493 - L1Md_F2 LINE L1 0 6582 6197 1 1362 252 319 166 72 chr11 101856363 101856504 -19987352 - L1MDa LINE L1 -4975 1658 1523 1 1362 736 267 93 10 chr11 101856506 101856710 -19987146 - ID_B1 SINE B4 -2 222 2 1 1362 469 282 6 71 chr11 101856828 101856996 -19986860 - RSINE1 SINE B4 0 165 9 1 1362 242 348 14 47 chr11 101857109 101857257 -19986599 - L1MDa LINE L1 -5486 1147 1005 1 1362 299 216 278 0 chr11 101857981 101858078 -19985778 + B1F SINE Alu 15 138 -11 1 1362 304 200 118 13 chr11 101858083 101858159 -19985697 + B3 SINE B2 1 84 -132 1 1362 1040 261 17 31 chr11 101858227 101858516 -19985340 - Lx6 LINE L1 -43 7417 7133 1 1362 599 0 14 0 chr11 101859174 101859245 -19984611 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1362 959 41 213 20 chr11 101859904 101860054 -19983802 + B2_Mm2 SINE B2 4 182 -13 1 1362 225 250 17 0 chr11 101860074 101860134 -19983722 + B2_Mm2 SINE B2 64 124 -71 1 1362 390 289 42 58 chr11 101860506 101860682 -19983174 - B4A SINE B4 -113 179 3 1 1362 210 289 18 90 chr11 101860686 101860819 -19983037 + MIRm SINE MIR 69 204 -64 1 1362 266 352 41 50 chr11 101861083 101861325 -19982531 + Tigger15a DNA TcMar 325 564 -151 1 1362 259 241 36 12 chr11 101861759 101861843 -19982013 + MIR3 SINE MIR 93 178 -30 1 1362 466 202 153 15 chr11 101862337 101862468 -19981388 + B1F SINE Alu 1 149 0 1 1362 975 271 27 44 chr11 101862540 101862837 -19981019 + B4A SINE B4 1 292 0 1 1362 279 0 0 0 chr11 101862953 101862984 -19980872 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1362 871 157 30 0 chr11 101864307 101864441 -19979415 + B1_Mur3 SINE Alu 5 142 -7 1 1362 396 0 0 0 chr11 101864447 101864491 -19979365 + (CTAA)n Simple_repeat Simple_repeat 3 46 0 1 1362 1054 217 19 5 chr11 101864497 101864710 -19979146 + B3 SINE B2 1 216 0 1 1362 660 190 140 6 chr11 101864758 101864922 -19978934 - B3 SINE B2 -3 213 28 1 1362 526 294 78 0 chr11 101865010 101865163 -19978693 - B3A SINE B2 -33 165 1 1 1362 809 260 6 0 chr11 101865719 101865892 -19977964 - B3A SINE B2 -15 183 10 1 1362 408 318 0 0 chr11 101865911 101866018 -19977838 - PB1D10 SINE Alu -8 109 3 1 1362 1056 234 14 0 chr11 101866879 101867093 -19976763 - ID_B1 SINE B4 -7 217 1 1 1362 318 301 97 8 chr11 101867330 101867454 -19976402 - L2c LINE L2 -222 3165 3031 1 1362 345 24 0 0 chr11 101867539 101867581 -19976275 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1362 583 323 99 16 chr11 101867635 101867887 -19975969 - B4A SINE B4 -12 280 8 1 1362 306 350 115 14 chr11 101868302 101868519 -19975337 + L2c LINE L2 2925 3163 -224 1 1362 345 320 51 17 chr11 101869003 101869178 -19974678 + MIR SINE MIR 47 227 -35 1 1362 408 293 22 22 chr11 101870130 101870266 -19973590 + MIR3 SINE MIR 12 147 -61 1 1362 530 330 28 5 chr11 101870286 101870499 -19973357 + L1MC4 LINE L1 7655 7872 -170 1 1362 269 163 41 0 chr11 101872454 101872503 -19971353 - Charlie12 DNA MER1_type -9 2864 2814 1 1362 425 282 40 13 chr11 101872560 101872711 -19971145 + RMER30 DNA MER1_type 21 175 -27 1 1362 189 0 0 0 chr11 101873190 101873211 -19970645 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1362 783 325 66 36 chr11 101873531 101873598 -19970258 + MER2 DNA MER2_type 4 77 -268 1 1362 249 33 0 0 chr11 101873598 101873628 -19970228 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1362 783 325 66 36 chr11 101873628 101873722 -19970134 + MER2 DNA MER2_type 78 179 -166 1 1362 1974 178 72 0 chr11 101873722 101874071 -19969785 - ORR1D1 LTR MaLR 0 374 1 1 1362 783 325 66 36 chr11 101874071 101874240 -19969616 + MER2 DNA MER2_type 180 344 -1 1 1362 455 231 39 0 chr11 101874280 101874384 -19969472 + B1F SINE Alu 41 148 -1 1 1362 189 107 0 0 chr11 101875224 101875252 -19968604 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1362 215 409 74 44 chr11 101876019 101876290 -19967566 + L4 LINE RTE 1550 1828 -201 1 1362 479 196 171 0 chr11 101876351 101876504 -19967352 - B3 SINE B2 -6 187 1 1 1362 672 299 0 0 chr11 101876689 101876846 -19967010 + RSINE1 SINE B4 1 157 -8 1 1362 539 301 133 39 chr11 101876896 101877319 -19966537 + LTR16C LTR ERVL 17 568 0 1 1362 888 127 283 0 chr11 101878188 101878354 -19965502 + B3 SINE B2 4 216 0 1 1362 360 0 0 0 chr11 101878361 101878401 -19965455 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1362 1390 97 16 0 chr11 101878639 101878824 -19965032 - B2_Mm2 SINE B2 -7 188 1 1 1362 1233 206 9 0 chr11 101878835 101879049 -19964807 - B3 SINE B2 0 216 1 1 1362 427 17 16 16 chr11 101879728 101879789 -19964067 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1362 429 70 0 0 chr11 101880312 101880369 -19963487 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1362 713 189 244 27 chr11 101880417 101880614 -19963242 - B4 SINE B4 -51 241 2 1 1362 243 0 0 0 chr11 101880699 101880726 -19963130 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1362 621 118 0 0 chr11 101880740 101880850 -19963006 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 1 1362 744 201 21 0 chr11 101880878 101881022 -19962834 - ID_B1 SINE B4 -22 202 56 1 1362 337 294 0 92 chr11 101881057 101881188 -19962668 - PB1 SINE Alu 0 127 9 1 1362 666 254 0 14 chr11 101882110 101882250 -19961606 + ID_B1 SINE B4 86 223 -1 1 1362 507 259 129 7 chr11 101882262 101882402 -19961454 + RSINE1 SINE B4 5 161 -4 1 1362 26 0 0 0 chr11 101882417 101882443 -19961413 + AT_rich Low_complexity Low_complexity 1 26 0 1 1362 250 314 75 74 chr11 101882833 101883043 -19960813 + MIRb SINE MIR 40 259 -3 1 1362 230 193 123 0 chr11 101883580 101883637 -19960219 - MER58D DNA MER1_type -7 379 316 1 1362 1201 49 0 7 chr11 101883698 101883843 -19960013 + B1_Mus2 SINE Alu 2 145 -2 1 1362 1104 104 6 23 chr11 101883858 101884021 -19959835 + B2_Mm2 SINE B2 1 163 -32 1 1362 318 50 0 0 chr11 101884021 101884061 -19959795 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1 1362 1184 114 6 22 chr11 101884062 101884242 -19959614 + B2_Mm2 SINE B2 1 177 -18 1 1362 1104 104 6 23 chr11 101884242 101884253 -19959603 + B2_Mm2 SINE B2 164 174 -21 1 1362 436 200 17 0 chr11 101884253 101884373 -19959483 + (TA)n Simple_repeat Simple_repeat 1 122 0 1 1362 403 309 78 6 chr11 101885347 101885513 -19958343 - MIR SINE MIR -79 183 6 1 1362 286 206 31 43 chr11 101885509 101885602 -19958254 - MIRb SINE MIR -118 150 59 1 1362 378 0 0 0 chr11 101886186 101886228 -19957628 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1362 35 98 0 0 chr11 101888276 101888388 -19955468 + GC_rich Low_complexity Low_complexity 1 112 0 1 1362 252 285 0 0 chr11 101888420 101888501 -19955355 - L2a LINE L2 -8 3418 3287 1 1362 207 167 0 0 chr11 101888533 101888569 -19955287 + G-rich Low_complexity Low_complexity 1 36 0 1 1362 306 164 0 0 chr11 101888738 101888793 -19955063 + A-rich Low_complexity Low_complexity 1 55 0 1 1362 2485 138 40 15 chr11 101889367 101889763 -19954093 - MTB_Mm LTR MaLR -1 406 1 1 1362 622 195 8 33 chr11 101889784 101889906 -19953950 - PB1D9 SINE Alu 0 120 2 1 1362 225 0 0 0 chr11 101890081 101890106 -19953750 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1362 1197 69 0 0 chr11 101890106 101890251 -19953605 - B1_Mus2 SINE Alu 0 147 3 1 1362 300 286 172 16 chr11 101890252 101890380 -19953476 + L1MC LINE L1 4978 5125 -1021 1 1362 857 196 100 6 chr11 101890390 101890570 -19953286 + B3A SINE B2 1 197 -1 1 1362 654 286 6 44 chr11 101890658 101890841 -19953015 + B4 SINE B4 1 176 -116 1 1362 276 280 147 20 chr11 101890873 101890975 -19952881 + B4 SINE B4 161 275 -17 1 1362 315 0 0 0 chr11 101890981 101891016 -19952840 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1362 456 235 36 89 chr11 101891020 101891255 -19952601 + L1MC LINE L1 5200 5433 -731 1 1362 460 206 78 10 chr11 101891256 101891359 -19952497 - MLT1A0 LTR MaLR -7 358 249 1 1362 676 289 101 40 chr11 101891562 101891839 -19952017 - MTE2a LTR MaLR -39 340 47 1 1362 352 279 5 6 chr11 101891840 101891938 -19951918 + PB1D10 SINE Alu 3 99 -50 1 1362 669 235 64 6 chr11 101891948 101892119 -19951737 + B3A SINE B2 2 182 -16 1 1362 338 290 0 57 chr11 101892120 101892226 -19951630 + HAL1-3A_ME LINE L1 1976 2075 -783 1 1362 225 224 0 0 chr11 101892801 101892850 -19951006 + ID4 SINE ID 6 54 -29 1 1362 25 0 0 0 chr11 101892861 101892886 -19950970 + AT_rich Low_complexity Low_complexity 1 25 0 1 1362 1154 59 0 0 chr11 101892911 101893047 -19950809 + B1_Mus1 SINE Alu 2 137 -11 1 1362 362 262 121 45 chr11 101893444 101893576 -19950280 - L1MEg LINE L1 -925 5221 5080 1 1362 629 237 147 0 chr11 101893585 101893762 -19950094 + ID_B1 SINE B4 20 222 -2 1 1362 553 317 54 65 chr11 101893769 101893959 -19949897 + B4 SINE B4 1 179 -113 1 1362 4601 105 67 35 chr11 101893959 101894691 -19949165 - RMER6A LTR ERVK 0 756 2 1 1362 553 287 61 36 chr11 101894691 101894795 -19949061 + B4 SINE B4 84 274 -18 1 1362 288 0 0 0 chr11 101894853 101894885 -19948971 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1362 420 111 0 0 chr11 101895013 101895076 -19948780 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1362 711 222 120 22 chr11 101895142 101895183 -19948673 + B3 SINE B2 4 43 -173 1 1362 2149 177 67 35 chr11 101895183 101895199 -19948657 + MTD LTR MaLR 3 20 -399 1 1362 234 0 0 0 chr11 101895199 101895225 -19948631 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1362 2149 177 67 35 chr11 101895225 101895411 -19948445 + MTD LTR MaLR 21 209 -210 1 1362 1018 122 0 0 chr11 101895411 101895550 -19948306 + B1_Mus1 SINE Alu 1 139 -9 1 1362 279 0 0 0 chr11 101895550 101895581 -19948275 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1362 2149 177 67 35 chr11 101895581 101895780 -19948076 + MTD LTR MaLR 210 418 -1 1 1362 711 222 120 22 chr11 101895780 101895922 -19947934 + B3 SINE B2 44 205 -11 1 1362 332 305 37 79 chr11 101896368 101896557 -19947299 - L1MEg LINE L1 -5398 844 664 1 1362 272 247 0 28 chr11 101896656 101896741 -19947115 + RSINE1 SINE B4 2 84 -208 1 1362 44 35 0 0 chr11 101896769 101896827 -19947029 + AT_rich Low_complexity Low_complexity 1 58 0 1 1362 279 79 0 0 chr11 101896827 101896865 -19946991 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1362 854 243 26 37 chr11 101897274 101897543 -19946313 - L1MD3 LINE L1 -17 7978 7713 1 1362 575 271 107 15 chr11 101897561 101897767 -19946089 - MER2 DNA MER2_type -1 344 120 1 1362 226 258 31 70 chr11 101897800 101897916 -19945940 + B1_Mus1 SINE Alu 1 114 -34 1 1362 223 266 46 15 chr11 101897952 101898017 -19945839 + B4 SINE B4 2 68 -224 1 1362 330 183 0 0 chr11 101898022 101898093 -19945763 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1362 254 333 0 0 chr11 101898184 101898250 -19945606 - MER2B DNA MER2_type -177 159 94 1 1362 23 43 0 21 chr11 101898266 101898286 -19945570 + AT_rich Low_complexity Low_complexity 1 20 0 1 1362 917 189 129 16 chr11 101898286 101898480 -19945376 + B3 SINE B2 1 216 0 1 1362 23 43 0 21 chr11 101898480 101898507 -19945349 + AT_rich Low_complexity Low_complexity 1 27 0 1 1362 288 0 0 0 chr11 101898511 101898543 -19945313 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1362 369 0 0 0 chr11 101898543 101898583 -19945273 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1362 315 246 5 21 chr11 101898662 101898759 -19945097 - RSINE1 SINE B4 -35 130 36 1 1362 563 278 93 16 chr11 101899492 101899686 -19944170 + B3 SINE B2 8 216 0 1 1362 685 154 0 8 chr11 101899692 101899810 -19944046 + B2_Mm2 SINE B2 2 118 -77 1 1362 598 184 136 45 chr11 101899775 101899929 -19943927 + RMER19B LTR ERVK 158 325 -577 1 1362 2083 130 6 26 chr11 101899946 101900294 -19943562 + RMER19B LTR ERVK 544 884 -18 1 1362 261 116 23 0 chr11 101900296 101900339 -19943517 + B2_Mm1t SINE B2 1 44 -149 1 1362 498 319 58 37 chr11 101900543 101900784 -19943072 - MER20B DNA MER1_type -18 765 520 1 1362 258 32 0 0 chr11 101900875 101900906 -19942950 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1362 583 293 6 0 chr11 101901064 101901221 -19942635 + RSINE1 SINE B4 5 162 -3 1 1362 29 28 0 0 chr11 101901989 101902025 -19941831 + AT_rich Low_complexity Low_complexity 1 36 0 1 1362 1145 197 39 0 chr11 101902029 101902232 -19941624 + B3 SINE B2 4 214 -2 1 1362 234 0 0 0 chr11 101902479 101902505 -19941351 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1362 740 81 90 0 chr11 101902506 101902617 -19941239 - B1_Mus1 SINE Alu -12 136 16 1 1362 180 0 0 0 chr11 101903048 101903068 -19940788 + (GGGTG)n Simple_repeat Simple_repeat 5 24 0 1 1362 204 97 0 0 chr11 101903323 101903354 -19940502 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1362 367 187 33 0 chr11 101903374 101903465 -19940391 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 1 1362 336 246 0 0 chr11 101903601 101903666 -19940190 - ID4 SINE ID -16 67 3 1 1362 545 248 79 92 chr11 101903929 101904093 -19939763 - RSINE1 SINE B4 0 165 4 1 1362 21 0 0 0 chr11 101904646 101904667 -19939189 + GC_rich Low_complexity Low_complexity 1 21 0 1 1362 209 325 52 17 chr11 101905169 101905285 -19938571 - MIRb SINE MIR -97 171 52 1 1362 274 23 0 44 chr11 101905458 101905503 -19938353 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1362 1016 101 0 7 chr11 101905508 101905648 -19938208 - B1_Mus2 SINE Alu -7 140 2 1 1362 234 0 0 0 chr11 101905827 101905853 -19938003 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 1362 531 173 9 9 chr11 101905855 101905960 -19937896 - PB1D9 SINE Alu -9 111 7 1 1362 371 156 0 0 chr11 101906138 101906202 -19937654 + RMER19B LTR ERVK 43 106 -796 1 1362 647 179 13 3 chr11 101906174 101906311 -19937545 + RMER19B LTR ERVK 50 180 -557 1 1362 1248 111 41 0 chr11 101907766 101907937 -19935919 + B2_Mm2 SINE B2 2 179 -16 1 1362 633 27 0 0 chr11 101907937 101908012 -19935844 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 1362 455 283 26 9 chr11 101909112 101909226 -19934630 + PB1D10 SINE Alu 2 117 0 1 1362 546 258 12 41 chr11 101909228 101909398 -19934458 + RSINE1 SINE B4 1 165 0 1 1362 22 0 0 0 chr11 101909413 101909435 -19934421 + AT_rich Low_complexity Low_complexity 1 22 0 1 1362 263 331 53 40 chr11 101909586 101909737 -19934119 + YREP_Mm Unknown Unknown 141 293 -1519 1 1362 532 271 7 27 chr11 101909623 101909771 -19934085 - ID_B1 SINE B4 -9 215 71 1 1362 278 287 147 10 chr11 101909805 101909907 -19933949 - MIR SINE MIR -117 145 30 1 1362 986 167 0 0 chr11 101910227 101910371 -19933485 + B1_Mus2 SINE Alu 3 146 -1 1 1362 216 0 0 0 chr11 101910402 101910426 -19933430 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1362 380 228 167 0 chr11 101910511 101910625 -19933231 + ID_B1 SINE B4 91 223 -1 1 1362 246 277 58 70 chr11 101910571 101910741 -19933115 - MER33 DNA MER1_type -12 312 145 1 1362 781 84 0 0 chr11 101910741 101910848 -19933008 + B2_Mm2 SINE B2 2 108 -87 1 1362 323 136 17 0 chr11 101910875 101910934 -19932922 + (ATGGTG)n Simple_repeat Simple_repeat 4 63 0 1 1362 463 226 34 25 chr11 101910948 101911066 -19932790 + PB1 SINE Alu 3 121 -6 1 1362 240 364 41 0 chr11 101911404 101911525 -19932331 - ORR1E LTR MaLR -190 169 44 1 1362 1016 209 0 131 chr11 101912415 101912652 -19931204 - B3 SINE B2 -10 206 1 1 1362 216 86 0 0 chr11 101913119 101913154 -19930702 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1362 278 236 22 33 chr11 101913640 101913732 -19930124 + PB1D10 SINE Alu 7 97 -20 1 1362 211 291 84 60 chr11 101913762 101913903 -19929953 - MIRm SINE MIR -93 183 25 1 1362 500 269 97 63 chr11 101914207 101914413 -19929443 + ID_B1 SINE B4 9 221 -3 1 1362 612 285 44 0 chr11 101914413 101914550 -19929306 + B1_Mur1 SINE Alu 1 143 -6 1 1362 186 286 48 0 chr11 101914599 101914662 -19929194 - MIR SINE MIR -114 148 83 1 1362 281 269 40 129 chr11 101915155 101915279 -19928577 + PB1D10 SINE Alu 1 113 -4 1 1362 670 29 0 45 chr11 101916117 101916227 -19927629 + (TTCC)n Simple_repeat Simple_repeat 1 105 0 1 1362 1208 94 78 0 chr11 101917002 101917182 -19926674 + B2_Mm2 SINE B2 1 194 -1 1 1362 330 314 73 16 chr11 101917245 101917312 -19926544 + L1MEg LINE L1 1814 1885 -4199 1 1362 803 193 64 0 chr11 101917312 101917452 -19926404 + B1_Mur3 SINE Alu 1 149 0 1 1362 330 314 73 16 chr11 101917452 101917507 -19926349 + L1MEg LINE L1 1886 1942 -4142 1 1362 215 233 0 0 chr11 101917638 101917681 -19926175 + MER5B DNA MER1_type 11 53 -125 1 1362 253 222 173 48 chr11 101917687 101917791 -19926065 + MLT1J2 LTR MaLR 2 119 -329 1 1362 198 0 0 0 chr11 101918462 101918484 -19925372 + (TCC)n Simple_repeat Simple_repeat 3 24 0 1 1362 216 0 0 0 chr11 101919598 101919622 -19924234 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1362 201 211 0 0 chr11 101920956 101921008 -19922848 + GA-rich Low_complexity Low_complexity 1 52 0 1 1362 264 59 0 0 chr11 101922518 101922552 -19921304 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1362 195 167 0 0 chr11 101923051 101923093 -19920763 + A-rich Low_complexity Low_complexity 1 42 0 1 1362 517 153 16 43 chr11 101924888 101925072 -19918784 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1362 267 183 37 30 chr11 101925115 101925250 -19918606 + (TG)n Simple_repeat Simple_repeat 2 137 0 1 1362 558 161 28 22 chr11 101925266 101925444 -19918412 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1362 960 35 0 0 chr11 101926170 101926286 -19917570 + (CA)n Simple_repeat Simple_repeat 2 117 0 1 1362 208 284 250 0 chr11 101926457 101926545 -19917311 - MIR3 SINE MIR -17 191 82 1 1362 217 290 0 0 chr11 101926596 101926665 -19917191 - RSINE1 SINE B4 0 165 97 1 1362 380 241 33 82 chr11 101926664 101926786 -19917070 + RSINE1 SINE B4 25 140 -25 1 1362 381 93 0 0 chr11 101926812 101926866 -19916990 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1362 394 289 86 0 chr11 101927188 101927403 -19916453 - L1MC4a LINE L1 -291 7751 7487 1 1362 267 31 0 0 chr11 101927404 101927436 -19916420 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1362 840 196 102 15 chr11 101927466 101927663 -19916193 - B3 SINE B2 -1 215 2 1 1362 903 173 26 51 chr11 101927828 101928023 -19915833 - URR1A DNA MER1_type 0 226 37 1 1362 424 251 41 15 chr11 101928244 101928371 -19915485 - PB1D10 SINE Alu 0 148 16 1 1362 378 0 0 0 chr11 101928557 101928599 -19915257 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1362 628 247 18 41 chr11 101928612 101928781 -19915075 - RSINE1 SINE B4 0 165 1 1 1362 321 307 0 0 chr11 101928990 101929078 -19914778 - PB1D7 SINE Alu 0 120 33 1 1362 249 275 114 29 chr11 101929126 101929231 -19914625 + MER3 DNA MER1_type 37 150 -59 1 1362 677 141 0 32 chr11 101929217 101929342 -19914514 - B1_Mus2 SINE Alu 0 147 27 1 1362 861 183 193 6 chr11 101929548 101929729 -19914127 + B3 SINE B2 2 216 0 1 1362 383 345 126 26 chr11 101929743 101930014 -19913842 - MLT1A0 LTR MaLR -63 302 5 1 1362 198 0 0 0 chr11 101930270 101930292 -19913564 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1362 1096 178 32 37 chr11 101930398 101930614 -19913242 - B3 SINE B2 -1 215 1 1 1362 608 156 153 23 chr11 101930637 101930768 -19913088 - B1F SINE Alu -1 148 1 1 1362 901 297 151 36 chr11 101930799 101931523 -19912333 - L1MC4a LINE L1 -2022 5860 5044 1 1362 198 0 0 0 chr11 101931523 101931545 -19912311 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1362 254 349 104 26 chr11 101931545 101931677 -19912179 - L1MC4a LINE L1 -1103 5043 4903 1 1362 494 260 23 8 chr11 101931688 101931820 -19912036 + B4A SINE B4 1 134 -158 1 1362 203 0 0 36 chr11 101931961 101931989 -19911867 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 1 1362 370 308 28 124 chr11 101931993 101932097 -19911759 + B4A SINE B4 127 223 -69 1 1362 624 261 104 5 chr11 101932097 101932290 -19911566 + B3 SINE B2 5 216 0 1 1362 370 308 28 124 chr11 101932290 101932363 -19911493 + B4A SINE B4 224 287 -5 1 1362 1263 48 0 0 chr11 101932485 101932631 -19911225 + B1_Mm SINE Alu 1 146 -1 1 1362 324 0 0 0 chr11 101932631 101932667 -19911189 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1362 860 197 7 0 chr11 101932671 101932818 -19911038 + B1_Mur3 SINE Alu 1 148 -1 1 1362 236 339 0 135 chr11 101933091 101933224 -19910632 - PB1D10 SINE Alu -1 116 2 1 1362 270 236 0 0 chr11 101933300 101933355 -19910501 - RSINE1 SINE B4 -20 145 91 1 1362 227 206 31 31 chr11 101933797 101933862 -19909994 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 1 1362 895 228 50 15 chr11 101934502 101934702 -19909154 - B3 SINE B2 -1 215 9 1 1362 691 251 76 11 chr11 101934849 101935034 -19908822 + ID_B1 SINE B4 8 204 -20 1 1362 245 269 0 191 chr11 101934933 101935048 -19908808 + PB1D10 SINE Alu 14 106 -11 1 1362 379 351 20 20 chr11 101935894 101936045 -19907811 + ORR1E LTR MaLR 12 162 -197 1 1362 537 141 197 47 chr11 101936046 101936173 -19907683 + B1_Mur4 SINE Alu 3 148 0 1 1362 1551 132 115 109 chr11 101937400 101937688 -19906168 + ORR1B2 LTR MaLR 1 328 -39 1 1362 1420 55 11 6 chr11 101937688 101937865 -19905991 + B2_Mm1t SINE B2 3 181 -12 1 1362 261 0 0 0 chr11 101937865 101937894 -19905962 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1362 1551 132 115 109 chr11 101937894 101937966 -19905890 + ORR1B2 LTR MaLR 329 359 -8 1 1362 226 229 0 0 chr11 101938003 101938051 -19905805 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1 1362 823 226 12 19 chr11 101938740 101938915 -19904941 + B3A SINE B2 6 176 -22 1 1362 408 20 0 0 chr11 101938915 101938964 -19904892 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1362 358 278 52 99 chr11 101938964 101938980 -19904876 + B2_Mm1t SINE B2 174 188 -5 1 1362 336 291 0 0 chr11 101939080 101939166 -19904690 - L2a LINE L2 -36 3390 3305 1 1362 418 269 27 18 chr11 101939196 101939306 -19904550 - PB1 SINE Alu 0 127 17 1 1362 213 94 0 0 chr11 101939325 101939357 -19904499 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1 1362 441 208 89 0 chr11 101939503 101939604 -19904252 - ID_B1 SINE B4 -6 218 109 1 1362 236 254 43 29 chr11 101939546 101939615 -19904241 - PB1D9 SINE Alu -34 86 17 1 1362 358 217 48 0 chr11 101939625 101939708 -19904148 - PB1D10 SINE Alu 0 117 31 1 1362 659 247 13 7 chr11 101939847 101939998 -19903858 + B4A SINE B4 1 152 -140 1 1362 366 362 0 8 chr11 101940038 101940166 -19903690 + (CA)n Simple_repeat Simple_repeat 2 128 0 1 1362 264 77 0 0 chr11 101940187 101940226 -19903630 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1362 225 0 0 0 chr11 101941541 101941566 -19902290 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1362 939 159 14 0 chr11 101942646 101942791 -19901065 + B1_Mus1 SINE Alu 2 148 0 1 1362 270 81 0 0 chr11 101944962 101944999 -19898857 + (TAAG)n Simple_repeat Simple_repeat 3 39 0 1 1362 34 24 0 0 chr11 101944999 101945040 -19898816 + AT_rich Low_complexity Low_complexity 1 41 0 1 1362 1147 80 17 6 chr11 101945231 101945407 -19898449 - ORR1B2 LTR MaLR -189 178 1 1 1362 309 331 62 8 chr11 101946827 101946955 -19896901 - MIRc SINE MIR -87 181 47 1 1362 637 109 79 35 chr11 101947020 101947134 -19896722 - B1_Mur4 SINE Alu -1 149 31 1 1362 618 14 0 0 chr11 101947506 101947577 -19896279 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1362 580 102 20 0 chr11 101947976 101948074 -19895782 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 1362 315 0 0 0 chr11 101948172 101948207 -19895649 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1362 327 104 0 0 chr11 101951708 101951756 -19892100 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1362 1193 81 0 0 chr11 101951775 101951936 -19891920 - B2_Mm2 SINE B2 -34 161 1 1 1362 216 0 0 0 chr11 101952087 101952111 -19891745 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1362 427 306 47 62 chr11 101952174 101952207 -19891649 + B4A SINE B4 58 172 -120 1 1362 1119 29 0 0 chr11 101952207 101952347 -19891509 + B1_Mus1 SINE Alu 9 148 0 1 1362 427 306 47 62 chr11 101952347 101952366 -19891490 + B4A SINE B4 173 246 -46 1 1362 563 164 76 17 chr11 101952380 101952498 -19891358 + B2_Mm2 SINE B2 6 130 -65 1 1362 252 0 0 0 chr11 101952545 101952573 -19891283 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1362 464 265 0 25 chr11 101953662 101953782 -19890074 - PB1D10 SINE Alu 0 117 1 1 1362 21 36 0 0 chr11 101953930 101953958 -19889898 + AT_rich Low_complexity Low_complexity 1 28 0 1 1362 238 291 80 26 chr11 101954008 101954121 -19889735 + L2c LINE L2 3249 3367 -20 1 1362 355 284 158 45 chr11 101954386 101954519 -19889337 + B1F SINE Alu 1 148 -1 1 1362 731 229 7 0 chr11 101954548 101954688 -19889168 + B1_Mur2 SINE Alu 1 141 -8 1 1362 332 205 39 0 chr11 101954712 101954790 -19889066 + B3A SINE B2 1 81 -117 1 1362 360 0 0 0 chr11 101954793 101954833 -19889023 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1362 698 257 22 28 chr11 101954865 101955045 -19888811 + B4A SINE B4 1 179 -113 1 1362 733 274 35 35 chr11 101955433 101955660 -19888196 - MTE-int LTR MaLR -17 1563 1337 1 1362 827 162 14 7 chr11 101955673 101955816 -19888040 - B1_Mur4 SINE Alu -1 149 6 1 1362 940 277 69 0 chr11 101955826 101956086 -19887770 - MTE-int LTR MaLR -228 1352 1075 1 1362 480 240 98 8 chr11 101956313 101956435 -19887421 + ID_B1 SINE B4 81 213 -11 1 1362 369 109 0 0 chr11 101956435 101956499 -19887357 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1362 440 147 58 26 chr11 101956507 101956609 -19887247 + B1_Mur4 SINE Alu 2 119 -1 1 1362 414 0 0 0 chr11 101958337 101958383 -19885473 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1362 344 294 22 0 chr11 101959195 101959287 -19884569 + RSINE1 SINE B4 2 95 -70 1 1362 1049 190 87 0 chr11 101959937 101960132 -19883724 + B3 SINE B2 5 216 0 1 1362 411 21 0 0 chr11 101960549 101960597 -19883259 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1362 189 273 29 57 chr11 101961067 101961137 -19882719 + MIR3 SINE MIR 88 155 -53 1 1362 297 0 0 0 chr11 101961755 101961788 -19882068 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1362 351 0 0 0 chr11 101961788 101961826 -19882030 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1362 450 36 0 0 chr11 101964524 101964580 -19879276 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 1 1362 916 288 35 14 chr11 101964846 101965128 -19878728 - B4 SINE B4 -3 289 2 1 1362 1244 92 0 120 chr11 101965140 101965222 -19878634 - B2_Mm2 SINE B2 -7 188 116 1 1362 1192 68 0 0 chr11 101965222 101965369 -19878487 + B1_Mus2 SINE Alu 1 147 0 1 1362 1244 92 0 120 chr11 101965369 101965495 -19878361 - B2_Mm2 SINE B2 -80 115 5 1 1362 330 235 12 24 chr11 101965503 101965586 -19878270 - PB1D10 SINE Alu -1 116 35 1 1362 486 259 16 18 chr11 101965788 101965942 -19877914 + RSINE1 SINE B4 11 163 -2 1 1362 794 163 56 7 chr11 101966021 101966163 -19877693 + B1_Mur3 SINE Alu 1 149 0 1 1362 264 258 86 76 chr11 101966193 101966298 -19877558 + RSINE1 SINE B4 43 148 -17 1 1362 275 358 71 16 chr11 101970401 101970583 -19873273 - L3b LINE CR1 -43 439 248 1 1362 1120 91 0 0 chr11 101970808 101970951 -19872905 - B1_Mus1 SINE Alu -4 144 2 1 1362 537 115 124 0 chr11 101971262 101971375 -19872481 + L1Md_F2 LINE L1 6454 6580 -2 1 1362 336 184 184 48 chr11 101972182 101972285 -19871571 + PB1D9 SINE Alu 4 120 0 1 1362 424 338 71 33 chr11 101972290 101972471 -19871385 + ID_B1 SINE B4 6 196 -28 1 1362 2525 149 35 2 chr11 101972471 101972875 -19870981 - MTC LTR MaLR 0 421 5 1 1362 424 338 71 33 chr11 101972875 101972904 -19870952 + ID_B1 SINE B4 197 224 0 1 1362 220 224 44 15 chr11 101972937 101973005 -19870851 + B4A SINE B4 5 74 -218 1 1362 528 252 70 21 chr11 101973481 101973623 -19870233 + RSINE1 SINE B4 9 157 -8 1 1362 366 0 18 36 chr11 101973623 101973679 -19870177 + (CACAC)n Simple_repeat Simple_repeat 1 55 0 1 1362 231 36 0 0 chr11 101973749 101973777 -19870079 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1362 716 255 7 0 chr11 101973779 101973924 -19869932 - B1_Mur1 SINE Alu -2 147 2 1 170 1308 94 14 103 chr11 101973971 101974184 -19869672 - B2_Mm2 SINE B2 0 195 2 1 1363 206 62 0 30 chr11 101974925 101974958 -19868898 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1363 756 173 0 0 chr11 101974958 101975085 -19868771 - B1_Mur3 SINE Alu -9 140 14 1 1363 242 331 40 107 chr11 101975085 101975107 -19868749 - B4 SINE B4 -75 217 79 1 1363 215 207 207 0 chr11 101975285 101975343 -19868513 - RSINE1 SINE B4 -17 148 79 1 1363 1157 64 0 0 chr11 101975859 101975999 -19867857 + B1_Mm SINE Alu 1 140 -7 1 1363 1008 132 0 0 chr11 101976002 101976168 -19867688 + (GAAA)n Simple_repeat Simple_repeat 2 167 0 1 1363 180 0 0 0 chr11 101976171 101976191 -19867665 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1363 1984 220 70 57 chr11 101976451 101976868 -19866988 + RMER19C LTR ERVK 1 505 -106 1 1363 1226 68 0 0 chr11 101976868 101977015 -19866841 - B1_Mus2 SINE Alu 0 147 1 1 1363 1984 217 66 58 chr11 101977015 101977131 -19866725 + RMER19C LTR ERVK 506 611 0 1 1363 751 261 41 5 chr11 101977214 101977410 -19866446 + B3 SINE B2 1 203 -13 1 1363 195 42 0 0 chr11 101977410 101977434 -19866422 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1363 633 148 29 7 chr11 101977891 101978027 -19865829 + CT-rich Low_complexity Low_complexity 4 142 0 1 1363 478 238 9 0 chr11 101978027 101978132 -19865724 - PB1D9 SINE Alu -14 106 1 1 1363 941 227 0 0 chr11 101978394 101978557 -19865299 + RSINE1 SINE B4 3 165 0 1 1363 648 236 0 0 chr11 101978557 101978735 -19865121 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1363 445 268 150 26 chr11 101978982 101979135 -19864721 + RMER5 LTR ERV1 340 511 -23 1 1363 279 0 0 0 chr11 101979274 101979305 -19864551 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1363 546 216 39 31 chr11 101979308 101979437 -19864419 - B1_Mur1 SINE Alu -14 135 6 1 1363 251 310 9 83 chr11 101979446 101979555 -19864301 - BC1_Mm scRNA scRNA -47 105 5 1 1363 910 220 25 30 chr11 101979596 101979766 -19864090 + B3A SINE B2 1 173 -25 1 1363 216 0 0 0 chr11 101979766 101979790 -19864066 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1363 910 220 25 30 chr11 101979790 101979816 -19864040 + B3A SINE B2 174 196 -2 1 1363 571 242 117 112 chr11 101979830 101980044 -19863812 + B3 SINE B2 1 215 -1 1 1363 476 194 93 0 chr11 101980061 101980169 -19863687 + B1F2 SINE Alu 5 122 -27 1 1363 311 315 193 30 chr11 101980343 101980680 -19863176 + L1MD2 LINE L1 5589 5980 -379 1 1363 1252 145 24 10 chr11 101980754 101980963 -19862893 + B3 SINE B2 2 213 -3 1 1363 1091 136 20 40 chr11 101980966 101981165 -19862691 + B2_Mm2 SINE B2 1 195 0 1 1363 1024 136 0 7 chr11 101981167 101981315 -19862541 + B1_Mus2 SINE Alu 1 147 0 1 1363 358 346 18 18 chr11 101981817 101981982 -19861874 + RSINE1 SINE B4 1 165 0 1 1363 348 24 0 0 chr11 101982011 101982052 -19861804 + (TGG)n Simple_repeat Simple_repeat 1 41 0 1 1363 339 235 46 23 chr11 101982486 101982573 -19861283 + L1ME4a LINE L1 6034 6122 -2 1 1363 914 176 0 13 chr11 101982577 101982727 -19861129 + B1_Mur2 SINE Alu 1 148 -1 1 1363 1087 108 0 0 chr11 101982729 101982886 -19860970 + B2_Mm2 SINE B2 2 158 -37 1 1363 252 0 0 0 chr11 101982887 101982915 -19860941 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1 1363 891 248 9 28 chr11 101982922 101983134 -19860722 + ID_B1 SINE B4 1 208 -16 1 1363 390 42 0 0 chr11 101983135 101983183 -19860673 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 1 1363 1018 96 32 0 chr11 101983196 101983447 -19860409 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 1 1363 304 342 72 20 chr11 101983609 101983761 -19860095 - L3 LINE CR1 -1077 3412 3253 1 1363 230 344 115 12 chr11 101983811 101983976 -19859880 + MIR SINE MIR 20 201 -61 1 1363 573 278 23 34 chr11 101984022 101984197 -19859659 + ID_B1 SINE B4 3 175 -49 1 1363 415 222 30 20 chr11 101984112 101984213 -19859643 + PB1D10 SINE Alu 7 108 -9 1 1363 378 0 0 0 chr11 101984368 101984410 -19859446 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1363 351 0 0 0 chr11 101985164 101985203 -19858653 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1363 602 271 0 0 chr11 101985210 101985332 -19858524 - RSINE1 SINE B4 -22 143 22 1 1363 225 0 0 0 chr11 101985970 101985995 -19857861 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1363 349 342 110 86 chr11 101986358 101986515 -19857341 + MLT1J LTR MaLR 12 175 -337 1 1363 183 80 0 0 chr11 101986515 101986540 -19857316 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1363 665 275 91 25 chr11 101986541 101986739 -19857117 - ID_B1 SINE B4 -11 213 3 1 1363 349 342 110 86 chr11 101986739 101986963 -19856893 + MLT1J LTR MaLR 176 415 -97 1 1363 243 0 0 0 chr11 101986963 101986990 -19856866 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1363 1228 48 7 0 chr11 101986990 101987135 -19856721 - B1_Mus1 SINE Alu -2 146 1 1 1363 349 342 110 86 chr11 101987135 101987168 -19856688 + MLT1J LTR MaLR 416 439 -73 1 1363 272 287 59 0 chr11 101987174 101987275 -19856581 + MER5A DNA MER1_type 1 107 -82 1 1363 206 270 0 13 chr11 101987276 101987351 -19856505 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1363 251 250 33 0 chr11 101987416 101987476 -19856380 + MER5A DNA MER1_type 123 184 -5 1 1363 533 232 135 8 chr11 101987619 101987745 -19856111 - B1_Mur2 SINE Alu -7 142 1 1 1363 284 0 0 27 chr11 101987765 101987802 -19856054 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1363 636 247 25 51 chr11 101987802 101987960 -19855896 - B3A SINE B2 -44 154 1 1 1363 437 198 0 0 chr11 101987972 101988053 -19855803 - ID_B1 SINE B4 -1 223 143 1 1363 279 273 49 29 chr11 101988054 101988156 -19855700 + B1F SINE Alu 5 108 -41 1 1363 792 216 39 111 chr11 101988346 101988554 -19855302 + B3A SINE B2 5 197 -1 1 1363 395 317 0 0 chr11 101988779 101988902 -19854954 - L1ME3A LINE L1 -4 6169 6047 1 1363 371 245 75 9 chr11 101989020 101989127 -19854729 - B4A SINE B4 -47 245 132 1 1363 330 322 40 7 chr11 101989137 101989287 -19854569 - L1ME3A LINE L1 -477 5696 5542 1 1363 536 240 0 60 chr11 101989335 101989468 -19854388 + B1_Mur1 SINE Alu 18 142 -7 1 1363 840 48 0 0 chr11 101989474 101989579 -19854277 + (GGAA)n Simple_repeat Simple_repeat 3 107 0 1 1363 537 276 45 6 chr11 101989600 101989757 -19854099 + RSINE1 SINE B4 3 165 0 1 1363 1065 166 0 7 chr11 101990730 101991142 -19852714 + (CA)n Simple_repeat Simple_repeat 1 409 0 1 1363 375 262 38 69 chr11 101992359 101992373 -19851483 + MT2B LTR ERVL 152 161 -440 1 1363 955 98 14 0 chr11 101992373 101992516 -19851340 + B1_Mus2 SINE Alu 3 147 0 1 1363 473 256 45 23 chr11 101992537 101992669 -19851187 + B1F SINE Alu 5 139 -10 1 1363 657 25 0 0 chr11 101993080 101993159 -19850697 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1363 671 116 30 37 chr11 101993254 101993531 -19850325 + (TG)n Simple_repeat Simple_repeat 1 274 0 1 1363 185 364 29 52 chr11 101993594 101993730 -19850126 + MIRb SINE MIR 63 195 -73 1 1363 354 61 0 0 chr11 101993926 101993975 -19849881 + (ATTG)n Simple_repeat Simple_repeat 2 50 0 1 1363 845 61 17 0 chr11 101993975 101994090 -19849766 - B1_Mur3 SINE Alu -10 139 23 1 1363 381 260 0 40 chr11 101994160 101994260 -19849596 + ID_B1 SINE B4 116 211 -13 1 1363 972 236 156 12 chr11 101994406 101994588 -19849268 - MTD LTR MaLR -8 411 212 1 1363 1180 83 0 0 chr11 101994588 101994733 -19849123 - B1_Mus1 SINE Alu -1 147 3 1 1363 972 236 156 12 chr11 101994733 101994876 -19848980 - MTD LTR MaLR -208 211 40 1 1363 536 267 86 6 chr11 101994862 101995024 -19848832 - B3 SINE B2 -6 210 36 1 1363 1241 48 0 0 chr11 101995066 101995211 -19848645 + B1_Mus1 SINE Alu 2 146 -2 1 1363 185 0 40 0 chr11 101995212 101995237 -19848619 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1363 262 149 53 26 chr11 101995254 101995330 -19848526 + (CAAA)n Simple_repeat Simple_repeat 3 80 0 1 1363 189 265 265 0 chr11 101995427 101995525 -19848331 - MIRb SINE MIR -58 210 87 1 1363 241 113 75 0 chr11 101995862 101995915 -19847941 + C-rich Low_complexity Low_complexity 1 57 0 1 1363 278 367 8 15 chr11 101996189 101996319 -19847537 - RMER10B LTR ERVL -23 375 247 1 1363 367 247 12 0 chr11 101996793 101996878 -19846978 - PB1D10 SINE Alu -5 112 27 1 1363 1083 186 5 45 chr11 101996908 101997128 -19846728 - B3 SINE B2 -5 211 1 1 1363 936 134 0 0 chr11 101997358 101997635 -19846221 + (GA)n Simple_repeat Simple_repeat 1 277 0 1 1363 455 269 46 0 chr11 101997638 101997746 -19846110 - RSINE1 SINE B4 -51 114 2 1 1363 524 270 29 0 chr11 101998024 101998161 -19845695 + RSINE1 SINE B4 8 148 -17 1 1363 450 0 0 0 chr11 101998161 101998211 -19845645 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1363 460 301 15 7 chr11 101998471 101998608 -19845248 - ID_B1 SINE B4 -1 223 86 1 1363 323 316 37 15 chr11 101998629 101998719 -19845137 - L1MEg LINE L1 -4132 1952 1859 1 1363 902 109 80 0 chr11 101998719 101998856 -19845000 - B1_Mur3 SINE Alu 0 149 2 1 1363 323 316 37 15 chr11 101998856 101998868 -19844988 - L1MEg LINE L1 -4226 1858 1847 1 1363 1403 90 11 0 chr11 101998868 101999056 -19844800 - B2_Mm1t SINE B2 -3 190 1 1 1363 323 316 37 15 chr11 101999056 101999087 -19844769 - L1MEg LINE L1 -4238 1846 1815 1 1363 573 203 123 20 chr11 101999087 101999233 -19844623 - RSINE1 SINE B4 0 165 5 1 1363 250 268 0 0 chr11 101999299 101999355 -19844501 + PB1D7 SINE Alu 55 110 -10 1 1363 272 221 117 0 chr11 102000144 102000221 -19843635 + B4 SINE B4 201 286 -6 1 1363 1206 65 77 0 chr11 102000939 102001109 -19842747 + B2_Mm2 SINE B2 1 183 -12 2 1363 888 154 0 0 chr11 102001111 102001247 -19842609 - B1_Mur4 SINE Alu -13 137 2 3 1363 464 289 49 92 chr11 102001291 102001455 -19842401 + RSINE1 SINE B4 9 165 0 4 1363 300 292 120 40 chr11 102001516 102001537 -19842319 + L1MEg LINE L1 1839 1859 -4225 5 1363 1086 36 65 14 chr11 102001537 102001676 -19842180 + B1_Mus2 SINE Alu 2 147 0 6 1363 300 292 120 40 chr11 102001676 102001754 -19842102 + L1MEg LINE L1 1860 1946 -4138 5 1363 1199 82 68 42 chr11 102002178 102002368 -19841488 - B2_Mm2 SINE B2 0 195 1 7 1363 290 234 11 80 chr11 102002459 102002500 -19841356 + PB1D10 SINE Alu 31 66 -51 8 1363 219 69 0 0 chr11 102002500 102002529 -19841327 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1363 290 234 11 80 chr11 102002529 102002575 -19841281 + PB1D10 SINE Alu 67 112 -5 8 1363 186 43 0 0 chr11 102002674 102002697 -19841159 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1363 986 133 224 0 chr11 102002719 102002884 -19840972 + B3 SINE B2 1 202 -14 1 1363 297 0 0 0 chr11 102002890 102002923 -19840933 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1363 348 178 0 5 chr11 102002937 102003002 -19840854 - B2_Mm2 SINE B2 -107 109 47 1 1363 1194 124 11 0 chr11 102003034 102003211 -19840645 - B2_Mm1t SINE B2 -14 179 1 1 1363 318 26 0 0 chr11 102003228 102003267 -19840589 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1363 1308 56 0 0 chr11 102003267 102003427 -19840429 - B2_Mm1a SINE B2 -33 160 1 1 1363 354 224 213 49 chr11 102003471 102003593 -19840263 + B4A SINE B4 10 151 -141 1 1363 468 0 0 0 chr11 102004333 102004385 -19839471 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1363 239 323 0 0 chr11 102004755 102004767 -19839089 + B4A SINE B4 74 85 -207 1 1363 409 250 108 22 chr11 102004767 102004895 -19838961 + PB1D10 SINE Alu 1 128 -19 2 1363 259 266 12 81 chr11 102004930 102005016 -19838840 + MIR3 SINE MIR 81 160 -48 2 1363 369 153 268 9 chr11 102005523 102005635 -19838221 - B2_Mm2 SINE B2 0 195 55 2 1363 1277 97 11 6 chr11 102005683 102005860 -19837996 - B2_Mm1t SINE B2 -14 179 2 2 1363 423 236 50 93 chr11 102005868 102005889 -19837967 - ID_B1 SINE B4 -5 219 201 2 1363 1036 117 7 14 chr11 102005889 102006037 -19837819 + B1_Mus1 SINE Alu 2 148 0 2 1363 423 236 50 93 chr11 102006037 102006155 -19837701 - ID_B1 SINE B4 -24 200 86 2 1363 226 218 0 0 chr11 102006168 102006223 -19837633 + T-rich Low_complexity Low_complexity 5 59 0 2 1363 525 203 0 68 chr11 102006228 102006360 -19837496 - B1_Mur2 SINE Alu 0 149 27 2 1363 258 307 154 29 chr11 102006357 102006461 -19837395 - PB1D10 SINE Alu 0 117 1 2 1363 345 197 0 155 chr11 102009663 102009747 -19834109 + PB1D9 SINE Alu 33 103 -17 2 1363 228 335 35 2 chr11 102009985 102010086 -19833770 + MIRc SINE MIR 66 175 -101 3 1363 344 279 0 0 chr11 102010855 102010934 -19832922 - ID2 SINE ID 0 83 5 3 1363 396 0 0 0 chr11 102011140 102011184 -19832672 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1363 905 84 258 0 chr11 102011246 102011401 -19832455 + B2_Mm2 SINE B2 1 195 0 3 1363 962 69 8 0 chr11 102011532 102011662 -19832194 - B1_Mm SINE Alu 0 147 17 3 1363 519 250 81 29 chr11 102011672 102011808 -19832048 - B3A SINE B2 -3 195 53 3 1363 1444 89 0 5 chr11 102011813 102012005 -19831851 - B2_Mm2 SINE B2 -4 191 1 3 1363 988 277 0 10 chr11 102012093 102012301 -19831555 + B3 SINE B2 1 206 -10 3 1363 465 281 145 12 chr11 102012303 102012469 -19831387 - B3A SINE B2 -9 189 2 3 1363 441 0 0 0 chr11 102012469 102012518 -19831338 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1363 413 36 18 0 chr11 102012518 102012572 -19831284 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1363 666 217 182 24 chr11 102012585 102012755 -19831101 - ID_B1 SINE B4 -26 198 2 4 1363 275 324 43 35 chr11 102012884 102012999 -19830857 + MIRm SINE MIR 34 149 -127 4 1363 318 333 48 0 chr11 102013123 102013228 -19830628 + PB1D10 SINE Alu 1 110 -7 4 1363 691 165 98 0 chr11 102013240 102013373 -19830483 + B1_Mus2 SINE Alu 2 147 0 4 1363 210 290 16 0 chr11 102013422 102013484 -19830372 - ID2 SINE ID 0 83 21 4 1363 24 32 0 0 chr11 102013508 102013539 -19830317 + AT_rich Low_complexity Low_complexity 1 31 0 4 1363 747 124 71 0 chr11 102013549 102013662 -19830194 - B1_Mur4 SINE Alu -10 140 20 4 1363 180 0 0 0 chr11 102014171 102014191 -19829665 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1363 1332 90 16 21 chr11 102014947 102015140 -19828716 + B2_Mm2 SINE B2 2 193 -2 4 1363 221 225 69 45 chr11 102016167 102016280 -19827576 - MIRc SINE MIR -125 143 29 5 1363 480 183 77 0 chr11 102016371 102016475 -19827381 + PB1D9 SINE Alu 9 120 0 5 1363 252 303 99 26 chr11 102016716 102016870 -19826986 + MIR3 SINE MIR 2 171 -37 5 1363 908 127 52 46 chr11 102017905 102018078 -19825778 + B2_Mm2 SINE B2 1 174 -21 5 1363 1066 130 54 0 chr11 102018086 102018270 -19825586 - B2_Mm2 SINE B2 0 195 2 5 1363 676 234 14 14 chr11 102018272 102018419 -19825437 - B2_Mm2 SINE B2 -22 173 27 5 1363 181 288 68 0 chr11 102018570 102018629 -19825227 + MIR SINE MIR 128 190 -72 5 1363 849 85 85 0 chr11 102018819 102018949 -19824907 + RMER19B LTR ERVK 734 874 -28 5 1363 282 231 138 0 chr11 102018951 102019016 -19824840 - PB1D9 SINE Alu -46 74 1 5 1363 345 47 0 0 chr11 102019021 102019064 -19824792 + (TCC)n Simple_repeat Simple_repeat 3 45 0 5 1363 876 25 33 8 chr11 102019343 102019465 -19824391 + (TTTC)n Simple_repeat Simple_repeat 1 125 0 6 1363 1335 96 0 21 chr11 102019467 102019659 -19824197 - B2_Mm2 SINE B2 -7 188 1 6 1363 807 203 0 14 chr11 102019662 102019807 -19824049 - B1_Mus1 SINE Alu 0 148 6 6 1363 180 0 0 0 chr11 102019819 102019839 -19824017 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 6 1363 326 23 0 23 chr11 102019839 102019883 -19823973 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1363 889 88 0 0 chr11 102019883 102019997 -19823859 - B1_Mur4 SINE Alu -10 140 27 6 1363 1659 31 5 0 chr11 102020023 102020214 -19823642 + B2_Mm1t SINE B2 1 192 -1 6 1363 216 0 0 0 chr11 102021600 102021624 -19822232 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1363 666 60 0 0 chr11 102021624 102021707 -19822149 - B1_Mus2 SINE Alu -12 135 53 6 1363 297 167 41 96 chr11 102021657 102021730 -19822126 - MT2B LTR ERVL -344 257 189 6 1363 252 0 0 0 chr11 102021733 102021761 -19822095 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 1363 1074 61 30 0 chr11 102021761 102021892 -19821964 - B1_Mus2 SINE Alu -12 135 1 7 1363 396 278 36 27 chr11 102021909 102022020 -19821836 + PB1D7 SINE Alu 1 112 -8 7 1363 785 290 5 48 chr11 102022021 102022231 -19821625 + ID_B1 SINE B4 19 219 -5 7 1363 483 244 67 33 chr11 102022326 102022481 -19821375 + B3A SINE B2 1 145 -50 7 1363 217 253 37 74 chr11 102022452 102022533 -19821323 - B4A SINE B4 -214 78 1 7 1363 1184 74 0 0 chr11 102022578 102022726 -19821130 + B1_Mus1 SINE Alu 1 148 0 7 1363 498 237 29 29 chr11 102023046 102023185 -19820671 - B1F SINE Alu -6 143 5 7 1363 459 0 0 0 chr11 102023367 102023418 -19820438 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1363 468 0 0 0 chr11 102023420 102023472 -19820384 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1363 25 0 0 0 chr11 102023915 102023940 -19819916 + AT_rich Low_complexity Low_complexity 1 25 0 8 1363 327 49 0 0 chr11 102023963 102024004 -19819852 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1363 21 82 0 0 chr11 102024797 102024846 -19819010 + AT_rich Low_complexity Low_complexity 1 49 0 8 1363 243 125 0 0 chr11 102024869 102024909 -19818947 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1363 536 266 42 35 chr11 102025796 102025940 -19817916 - B3A SINE B2 -53 145 1 8 1363 694 273 22 11 chr11 102026027 102026205 -19817651 + B3 SINE B2 3 182 -34 8 1363 718 207 14 0 chr11 102026878 102027018 -19816838 + B1_Mus2 SINE Alu 1 142 -5 8 1363 234 269 0 107 chr11 102027018 102027083 -19816773 + MT2B LTR ERVL 199 256 -345 8 1363 512 128 198 0 chr11 102027021 102027107 -19816749 + B1_Mus2 SINE Alu 40 142 -5 8 1363 297 128 0 0 chr11 102027112 102027159 -19816697 + (GGA)n Simple_repeat Simple_repeat 2 48 0 8 1363 1080 72 43 0 chr11 102029367 102029506 -19814350 + B1_Mur3 SINE Alu 1 145 -4 9 1363 564 249 195 22 chr11 102030363 102030548 -19813308 + ID_B1 SINE B4 3 219 -5 9 1363 606 255 73 7 chr11 102031291 102031441 -19812415 + RSINE1 SINE B4 4 163 -2 9 1363 1011 187 9 120 chr11 102031904 102032012 -19811844 - B3 SINE B2 -10 206 110 9 1363 1124 88 0 20 chr11 102032012 102032163 -19811693 + B1_Mus1 SINE Alu 1 148 0 9 1363 1011 194 11 114 chr11 102032163 102032293 -19811563 - B3 SINE B2 -72 121 1 9 1363 434 250 18 63 chr11 102032307 102032418 -19811438 - PB1D10 SINE Alu -8 109 4 9 1363 282 284 9 73 chr11 102032322 102032432 -19811424 + YREP_Mm Unknown Unknown 224 326 -1486 9 1363 574 126 19 0 chr11 102032638 102032741 -19811115 + (GGGA)n Simple_repeat Simple_repeat 1 105 0 9 1363 380 227 224 52 chr11 102032922 102033038 -19810818 + RSINE1 SINE B4 12 147 -18 9 1363 484 214 20 20 chr11 102033153 102033253 -19810603 + PB1D10 SINE Alu 18 117 0 9 1363 461 293 60 20 chr11 102033453 102033603 -19810253 + RSINE1 SINE B4 6 161 -4 1 1363 1128 82 0 7 chr11 102033843 102033991 -19809865 - B1_Mus2 SINE Alu 0 147 1 1 1363 365 336 19 0 chr11 102034419 102034526 -19809330 + PB1D10 SINE Alu 1 109 -8 1 1363 450 232 0 0 chr11 102034577 102034677 -19809179 + ID_B1 SINE B4 80 175 -49 1 1363 334 215 152 10 chr11 102034697 102034784 -19809072 - PB1 SINE Alu -214 100 12 1 1363 284 247 72 24 chr11 102034713 102034796 -19809060 - ID_B1 SINE B4 -59 165 79 1 1363 1153 69 0 0 chr11 102034917 102035061 -19808795 + B1_Mm SINE Alu 3 146 -1 1 1363 429 176 54 0 chr11 102035079 102035153 -19808703 + RSINE1 SINE B4 59 136 -29 1 1363 280 198 73 104 chr11 102035216 102035233 -19808623 + MT2B LTR ERVL 146 159 -442 1 1363 388 297 29 10 chr11 102035233 102035335 -19808521 + PB1D10 SINE Alu 3 106 -11 1 1363 330 296 78 49 chr11 102035373 102035515 -19808341 + RSINE1 SINE B4 20 165 0 1 1363 283 297 27 0 chr11 102035585 102035659 -19808197 + ID4 SINE ID 2 77 -6 1 1363 298 359 48 0 chr11 102035806 102035909 -19807947 + MER58A DNA MER1_type 1 108 -116 1 1363 258 253 127 0 chr11 102036267 102036346 -19807510 + B1F1 SINE Alu 5 93 -56 1 1363 720 277 66 10 chr11 102037261 102037458 -19806398 + B3 SINE B2 7 214 -2 1 1363 1209 41 7 7 chr11 102037681 102037827 -19806029 + B1_Mus2 SINE Alu 2 147 0 1 1363 22 0 0 0 chr11 102037856 102037878 -19805978 + AT_rich Low_complexity Low_complexity 1 22 0 1 1363 381 191 115 21 chr11 102037892 102037988 -19805868 + B1_Mur4 SINE Alu 46 150 0 1 1363 342 0 0 0 chr11 102037990 102038028 -19805828 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 1 1363 396 0 0 0 chr11 102038028 102038071 -19805785 + (GAGAA)n Simple_repeat Simple_repeat 2 45 0 1 1363 330 271 0 0 chr11 102038356 102038426 -19805430 - RMER30 DNA MER1_type 0 202 133 1 1363 713 260 44 17 chr11 102038867 102039047 -19804809 + ID_B1 SINE B4 40 224 0 1 1363 348 80 0 0 chr11 102039047 102039074 -19804782 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1363 1212 61 0 0 chr11 102039074 102039221 -19804635 + B1_Mus2 SINE Alu 1 147 0 1 1363 348 80 0 0 chr11 102039221 102039243 -19804613 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1363 614 187 62 35 chr11 102039921 102040065 -19803791 + B1_Mur2 SINE Alu 1 148 -1 1 1363 298 232 0 0 chr11 102040072 102040128 -19803728 - ID4_ SINE ID -27 56 1 1 1363 420 213 43 0 chr11 102040554 102040648 -19803208 + ID_B1 SINE B4 127 224 0 1 1363 261 98 0 0 chr11 102041219 102041260 -19802596 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 1 1363 730 200 15 8 chr11 102042151 102042282 -19801574 - B1_Mur4 SINE Alu -9 141 10 1 1363 377 282 14 84 chr11 102042187 102042330 -19801526 - MT2B LTR ERVL -344 257 125 1 1363 733 299 167 4 chr11 102042440 102042685 -19801171 + B4A SINE B4 2 286 -6 1 1363 749 188 145 20 chr11 102042753 102042906 -19800950 + B3A SINE B2 6 176 -22 1 1363 584 270 43 7 chr11 102042906 102043044 -19800812 + B1_Mur1 SINE Alu 2 144 -5 1 1363 597 246 134 38 chr11 102043044 102043076 -19800780 + B3 SINE B2 176 209 -7 1 1363 186 103 0 0 chr11 102043077 102043106 -19800750 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1363 514 298 0 0 chr11 102043122 102043226 -19800630 - B1F2 SINE Alu -45 104 1 1 1363 465 279 35 18 chr11 102043258 102043371 -19800485 - ID_B1 SINE B4 -19 205 91 1 1363 263 167 0 32 chr11 102043371 102043433 -19800423 + T-rich Low_complexity Low_complexity 4 63 0 1 1363 522 144 101 46 chr11 102043438 102043547 -19800309 - PB1D7 SINE Alu -5 115 1 1 1363 594 259 7 53 chr11 102043633 102043784 -19800072 + ID_B1 SINE B4 81 224 0 1 1363 750 256 33 24 chr11 102043786 102043998 -19799858 + ID_B1 SINE B4 3 216 -8 1 1363 803 161 7 20 chr11 102044375 102044521 -19799335 + B1_Mur4 SINE Alu 1 144 -6 1 1363 396 40 0 0 chr11 102044522 102044572 -19799284 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1363 252 86 0 0 chr11 102045006 102045041 -19798815 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1 1363 1101 70 35 0 chr11 102045109 102045251 -19798605 + B1_Mm SINE Alu 1 147 0 1 1363 204 118 0 29 chr11 102046529 102046564 -19797292 + (CGG)n Simple_repeat Simple_repeat 3 36 0 1 1363 183 314 21 75 chr11 102046888 102046981 -19796875 - MIRc SINE MIR -113 155 68 1 1363 249 265 202 10 chr11 102047113 102047212 -19796644 - MIRb SINE MIR -90 178 61 1 1363 221 316 0 0 chr11 102047246 102047303 -19796553 + MIRb SINE MIR 152 208 -60 1 1363 387 60 0 0 chr11 102047452 102047502 -19796354 + (CATA)n Simple_repeat Simple_repeat 4 53 0 1 1363 186 128 0 0 chr11 102048044 102048083 -19795773 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1363 978 55 8 8 chr11 102048083 102048211 -19795645 - B1_Mm SINE Alu 0 147 20 1 1363 368 278 71 75 chr11 102048226 102048357 -19795499 - Tigger7 DNA MER2_type -44 2447 2318 1 1363 198 0 0 0 chr11 102048357 102048379 -19795477 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 1 1363 932 162 0 7 chr11 102048380 102048523 -19795333 - B1_Mur3 SINE Alu -7 142 1 1 1363 368 286 81 49 chr11 102048523 102048690 -19795166 - Tigger7 DNA MER2_type -174 2317 2229 1 1363 1244 48 115 0 chr11 102048701 102048866 -19794990 + B2_Mm2 SINE B2 1 184 -11 1 1363 686 117 18 26 chr11 102048879 102048993 -19794863 + B1_Mur4 SINE Alu 32 144 -6 1 1363 1109 82 0 7 chr11 102049004 102049152 -19794704 + B1_Mus2 SINE Alu 1 147 0 1 1363 249 283 225 28 chr11 102049193 102049335 -19794521 - Tigger7 DNA MER2_type -2248 243 74 1 1363 425 250 21 0 chr11 102049321 102049417 -19794439 - B3 SINE B2 0 216 119 1 1363 761 172 7 46 chr11 102049515 102049667 -19794189 + B1_Mm SINE Alu 2 147 0 1 1363 284 218 233 33 chr11 102049712 102049802 -19794054 + PB1D10 SINE Alu 9 116 -1 1 1363 403 147 209 29 chr11 102049809 102049914 -19793942 + B1_Mur2 SINE Alu 25 148 -1 1 1363 718 179 21 35 chr11 102050047 102050192 -19793664 + B1_Mus2 SINE Alu 5 147 0 1 1363 302 262 0 149 chr11 102050201 102050295 -19793561 + B4A SINE B4 76 155 -137 1 1363 418 183 9 131 chr11 102050211 102050318 -19793538 + B1_Mur3 SINE Alu 1 94 -56 1 1363 23 0 0 0 chr11 102051063 102051086 -19792770 + GC_rich Low_complexity Low_complexity 1 23 0 1 1363 227 330 70 26 chr11 102051620 102051735 -19792121 + MER5A DNA MER1_type 24 143 -46 1 1363 296 286 135 54 chr11 102051834 102051945 -19791911 + MER5A1 DNA MER1_type 10 129 -37 1 1363 229 279 165 0 chr11 102052463 102052542 -19791314 - ID_B1 SINE B4 -48 176 85 1 1363 253 270 32 0 chr11 102052481 102052544 -19791312 - PB1D7 SINE Alu -54 66 2 1 1363 297 0 0 0 chr11 102052927 102052960 -19790896 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1363 1054 81 0 69 chr11 102053015 102053174 -19790682 - B1_Mus1 SINE Alu 0 148 1 1 1363 458 248 0 0 chr11 102059384 102059485 -19784371 - PB1D10 SINE Alu -5 112 12 1 1363 300 53 0 0 chr11 102063451 102063489 -19780367 + (TCC)n Simple_repeat Simple_repeat 2 39 0 1 1363 241 169 0 44 chr11 102063865 102063933 -19779923 + (CTG)n Simple_repeat Simple_repeat 3 67 0 1 1363 306 354 95 5 chr11 102064427 102064637 -19779219 + MER33 DNA MER1_type 29 257 -67 1 1363 1188 61 0 7 chr11 102064642 102064790 -19779066 - B1_Mus2 SINE Alu 0 147 1 1 1363 597 177 95 16 chr11 102064790 102064916 -19778940 + B1_Mur1 SINE Alu 13 148 -1 1 1363 535 299 70 66 chr11 102065002 102065274 -19778582 - B4 SINE B4 -18 274 2 1 1363 368 264 6 71 chr11 102065346 102065483 -19778373 + PB1D7 SINE Alu 16 147 -2 1 1363 240 136 68 0 chr11 102067353 102067397 -19776459 - PB1D10 SINE Alu 0 117 71 1 1363 655 224 7 15 chr11 102067359 102067495 -19776361 - ID_B1 SINE B4 -6 218 84 1 1363 21 57 0 0 chr11 102067886 102067921 -19775935 + GC_rich Low_complexity Low_complexity 1 35 0 1 1363 252 200 0 0 chr11 102067979 102068059 -19775797 + (CTG)n Simple_repeat Simple_repeat 3 82 0 1 1363 407 289 44 38 chr11 102068794 102069013 -19774843 - MIR SINE MIR -29 239 24 1 1363 213 390 0 0 chr11 102069328 102069423 -19774433 + G-rich Low_complexity Low_complexity 4 98 0 1 1363 333 0 0 0 chr11 102070165 102070202 -19773654 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1363 387 0 0 0 chr11 102070205 102070248 -19773608 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1363 207 0 0 0 chr11 102070248 102070270 -19773586 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1363 881 96 0 0 chr11 102072045 102072170 -19771686 + B1_Mur4 SINE Alu 24 148 -2 1 1363 476 256 60 81 chr11 102072195 102072344 -19771512 + B1F SINE Alu 4 149 0 1 1363 313 324 33 13 chr11 102072826 102072976 -19770880 - MIR3 SINE MIR -23 185 33 1 1363 191 294 105 12 chr11 102073537 102073623 -19770233 + MIRb SINE MIR 137 230 -38 1 1363 264 59 0 0 chr11 102073680 102073714 -19770142 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1363 334 231 51 0 chr11 102073768 102073846 -19770010 + ID4 SINE ID 2 83 0 1 1363 274 302 208 0 chr11 102073898 102073994 -19769862 + PB1D10 SINE Alu 2 117 0 1 1363 435 202 22 11 chr11 102073997 102074087 -19769769 + B1_Mur1 SINE Alu 59 149 0 1 1363 232 243 0 195 chr11 102074130 102074217 -19769639 + B1F1 SINE Alu 28 97 -52 1 1363 360 0 0 0 chr11 102074220 102074260 -19769596 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1363 228 35 0 0 chr11 102074260 102074288 -19769568 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1363 877 200 102 5 chr11 102074290 102074486 -19769370 + B3 SINE B2 2 216 0 2 1363 946 152 0 11 chr11 102074500 102074679 -19769177 + GA-rich Low_complexity Low_complexity 3 179 0 2 1363 249 350 62 17 chr11 102075239 102075416 -19768440 - MIR3 SINE MIR -3 205 21 2 1363 222 37 0 0 chr11 102075787 102075814 -19768042 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 2 1363 235 250 17 0 chr11 102076571 102076631 -19767225 + Zaphod2 DNA Tip100 3 63 -3461 2 1363 272 288 133 9 chr11 102076768 102076873 -19766983 + MIRb SINE MIR 46 163 -105 2 1363 207 0 0 0 chr11 102077982 102078005 -19765851 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1363 414 0 0 0 chr11 102078775 102078821 -19765035 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1363 531 284 0 6 chr11 102082159 102082293 -19761563 - PB1D7 SINE Alu -19 130 3 2 1363 267 0 22 44 chr11 102090309 102090354 -19753502 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1363 213 175 0 0 chr11 102091346 102091386 -19752470 + (CGG)n Simple_repeat Simple_repeat 2 41 0 2 1363 365 341 116 33 chr11 102092082 102092339 -19751517 + L1ME4a LINE L1 5544 5826 -298 2 1363 1356 129 71 0 chr11 102092371 102092596 -19751260 + RMER16 LTR ERVK 63 303 -230 2 1363 860 94 47 0 chr11 102092594 102092722 -19751134 + B1_Mus1 SINE Alu 14 147 -1 2 1363 412 146 19 28 chr11 102092844 102092950 -19750906 + CT-rich Low_complexity Low_complexity 5 109 0 2 1363 863 121 33 66 chr11 102092959 102093110 -19750746 - B1_Mus2 SINE Alu 0 147 2 2 1363 1383 81 32 0 chr11 102093168 102093354 -19750502 - B2_Mm1t SINE B2 0 193 2 2 1363 278 359 27 27 chr11 102093657 102093803 -19750053 - MER5A DNA MER1_type -18 171 26 2 1363 190 377 84 26 chr11 102093918 102094073 -19749783 + L2c LINE L2 3052 3215 -172 2 1363 300 250 14 14 chr11 102094145 102094218 -19749638 - tRNA-Ala-GCY_ tRNA tRNA 0 75 3 2 1363 1145 167 347 13 chr11 102094443 102094757 -19749099 + MTC LTR MaLR 3 421 0 2 1363 360 0 0 0 chr11 102094767 102094807 -19749049 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1363 273 333 0 0 chr11 102094810 102094885 -19748971 - PB1D10 SINE Alu -38 79 5 2 1363 605 138 0 60 chr11 102094915 102095031 -19748825 - B1_Mus1 SINE Alu 0 148 40 2 1363 245 231 55 156 chr11 102094921 102095049 -19748807 - B4 SINE B4 -69 223 109 2 1363 835 235 44 20 chr11 102095085 102095289 -19748567 - B3 SINE B2 0 216 8 2 1363 1395 68 15 25 chr11 102095343 102095540 -19748316 - B2_Mm2 SINE B2 0 195 1 2 1363 276 306 92 45 chr11 102095625 102095841 -19748015 - MIR3 SINE MIR -22 254 35 2 1363 195 146 0 0 chr11 102096041 102096082 -19747774 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1363 374 287 66 0 chr11 102096082 102096218 -19747638 + ID_B1 SINE B4 78 222 -2 2 1363 517 270 50 28 chr11 102096222 102096363 -19747493 + B1_Mur1 SINE Alu 1 144 -5 2 1363 465 182 36 30 chr11 102097761 102097928 -19745928 + ID_B1 SINE B4 9 221 -3 2 1363 357 131 0 0 chr11 102098072 102098133 -19745723 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 2 1363 1814 164 186 10 chr11 102098197 102098610 -19745246 + RMER15 LTR ERVL 90 575 0 2 1363 357 24 0 0 chr11 102098892 102098934 -19744922 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 1363 1189 42 0 20 chr11 102098934 102099070 -19744786 - B1_Mus2 SINE Alu -11 136 1 2 1363 649 238 61 0 chr11 102099164 102099311 -19744545 - ID_B1 SINE B4 -20 204 49 2 1363 194 261 0 42 chr11 102099429 102099477 -19744379 + MIRc SINE MIR 102 147 -121 2 1363 218 213 64 0 chr11 102099487 102099534 -19744322 + PB1D7 SINE Alu 45 94 -26 2 1363 189 0 0 0 chr11 102099920 102099941 -19743915 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1363 1405 55 21 27 chr11 102100472 102100659 -19743197 - B2_Mm2 SINE B2 -8 187 2 2 1363 199 306 16 0 chr11 102100714 102100776 -19743080 + MIRc SINE MIR 75 137 -131 2 1363 271 362 8 8 chr11 102100947 102101064 -19742792 + PB1D10 SINE Alu 1 117 0 2 1363 701 254 25 30 chr11 102101282 102101481 -19742375 + B3A SINE B2 1 198 0 2 1363 920 152 21 0 chr11 102101537 102101682 -19742174 + B1_Mur4 SINE Alu 2 149 -1 2 1363 776 167 33 53 chr11 102101692 102101844 -19742012 + B1_Mur3 SINE Alu 1 149 0 2 1363 573 165 9 35 chr11 102101879 102101992 -19741864 + B1_Mus2 SINE Alu 38 147 0 2 1363 322 278 133 0 chr11 102102007 102102097 -19741759 + RSINE1 SINE B4 6 107 -58 2 1363 418 236 0 41 chr11 102102192 102102289 -19741567 + PB1D10 SINE Alu 24 116 -1 2 1363 30 0 0 0 chr11 102102402 102102432 -19741424 + AT_rich Low_complexity Low_complexity 1 30 0 2 1363 210 286 16 0 chr11 102102759 102102822 -19741034 - MIRb SINE MIR -87 181 118 2 1363 349 312 18 0 chr11 102102865 102102974 -19740882 - ID_B1 SINE B4 0 224 114 2 1363 979 223 29 10 chr11 102103264 102103472 -19740384 + B3 SINE B2 1 212 -4 2 1363 315 0 0 0 chr11 102103493 102103528 -19740328 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1363 870 162 0 14 chr11 102103530 102103668 -19740188 - B1_Mur3 SINE Alu -11 138 3 2 1363 412 233 136 0 chr11 102103695 102103798 -19740058 + PB1D10 SINE Alu 1 117 0 2 1363 222 369 0 0 chr11 102104119 102104203 -19739653 + MIRb SINE MIR 107 190 -78 2 1363 264 355 0 61 chr11 102104259 102104373 -19739483 + B3A SINE B2 62 168 -30 2 1363 308 43 0 13 chr11 102104386 102104439 -19739417 + B1_Mus2 SINE Alu 69 147 0 2 1363 273 292 87 48 chr11 102104641 102104767 -19739089 - L1MB7 LINE L1 -19 6165 6035 2 1363 1123 60 157 23 chr11 102104855 102105027 -19738829 + B2_Mm2 SINE B2 1 195 0 2 170 664 198 35 35 chr11 102105033 102105208 -19738648 + B1_Mus2 SINE Alu 2 311 0 2 1364 1095 83 21 0 chr11 102105214 102105358 -19738498 + B1_Mm SINE Alu 1 147 0 2 1364 326 45 60 15 chr11 102105360 102105373 -19738483 + (CAAAAA)n Simple_repeat Simple_repeat 3 14 0 2 1364 1222 48 0 0 chr11 102105373 102105519 -19738337 + B1_Mus2 SINE Alu 2 147 0 2 1364 326 45 60 15 chr11 102105519 102105572 -19738284 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 2 1364 361 179 12 12 chr11 102105653 102105738 -19738118 + CT-rich Low_complexity Low_complexity 2 86 0 2 1364 208 231 0 0 chr11 102106701 102106740 -19737116 + (CACG)n Simple_repeat Simple_repeat 1 39 0 2 1364 491 260 20 33 chr11 102106888 102107039 -19736817 - MER3 DNA MER1_type -56 153 5 2 1364 332 320 92 34 chr11 102107440 102107647 -19736209 - MIRb SINE MIR -14 254 36 2 1364 460 266 9 9 chr11 102107872 102107982 -19735874 + PB1D7 SINE Alu 1 110 -10 2 1364 304 239 0 0 chr11 102108142 102108209 -19735647 - MurSatRep1 Unknown Unknown -1839 298 232 2 1364 231 204 0 0 chr11 102108216 102108265 -19735591 + A-rich Low_complexity Low_complexity 1 49 0 2 1364 929 185 25 45 chr11 102108267 102108465 -19735391 + B2_Mm2 SINE B2 2 195 0 2 1364 212 257 135 0 chr11 102108487 102108561 -19735295 + PB1D10 SINE Alu 1 84 -33 2 1364 198 91 0 0 chr11 102108980 102109013 -19734843 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1364 907 108 65 0 chr11 102109020 102109159 -19734697 - B1_Mus1 SINE Alu 0 148 1 2 1364 276 261 40 80 chr11 102109180 102109280 -19734576 + Charlie4z DNA MER1_type 31 126 -41 2 1364 254 295 59 69 chr11 102109594 102109696 -19734160 + ID_B1 SINE B4 2 102 -122 2 1364 23 0 0 0 chr11 102109750 102109773 -19734083 + GC_rich Low_complexity Low_complexity 1 23 0 2 1364 530 202 161 0 chr11 102109778 102109902 -19733954 + ID_B1 SINE B4 58 201 -23 2 1364 258 32 0 0 chr11 102109956 102109987 -19733869 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1364 218 136 23 0 chr11 102110727 102110771 -19733085 + CT-rich Low_complexity Low_complexity 2 46 0 2 1364 446 207 154 8 chr11 102110803 102110920 -19732936 - B1_Mur2 SINE Alu -10 139 6 2 1364 212 250 100 0 chr11 102111167 102111227 -19732629 + ID_B1 SINE B4 92 157 -67 2 1364 231 207 91 68 chr11 102111227 102111315 -19732541 + B4 SINE B4 1 90 -202 2 1364 198 103 0 0 chr11 102111554 102111583 -19732273 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1364 214 82 0 208 chr11 102111583 102111660 -19732196 + T-rich Low_complexity Low_complexity 1 61 0 2 1364 1158 36 50 0 chr11 102111660 102111800 -19732056 - B1_Mus2 SINE Alu 0 147 1 2 1364 360 244 11 22 chr11 102112245 102112337 -19731519 + PB1D10 SINE Alu 24 114 -3 2 1364 682 233 0 7 chr11 102112363 102112510 -19731346 - B1_Mur3 SINE Alu -3 146 1 2 1364 249 261 170 98 chr11 102112533 102112548 -19731308 + B4A SINE B4 82 140 -152 2 1364 625 126 9 35 chr11 102112548 102112663 -19731193 + PB1D9 SINE Alu 9 120 0 2 1364 249 261 170 98 chr11 102112663 102112686 -19731170 + B4A SINE B4 141 245 -47 2 1364 622 278 29 6 chr11 102112712 102112882 -19730974 + ID_B1 SINE B4 51 224 0 2 1364 183 257 39 51 chr11 102113087 102113165 -19730691 + MIR SINE MIR 72 148 -60 2 1364 1123 59 0 0 chr11 102113315 102113450 -19730406 + B1_Mus1 SINE Alu 2 136 -12 2 1364 360 0 0 0 chr11 102113450 102113490 -19730366 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2 1364 370 278 27 7 chr11 102113615 102113749 -19730107 - PB1D10 SINE Alu -15 132 1 2 1364 227 297 54 0 chr11 102113686 102113760 -19730096 - B4A SINE B4 -144 148 71 2 1364 210 146 0 146 chr11 102113857 102113905 -19729951 - PB1D9 SINE Alu -59 61 21 2 1364 335 48 65 0 chr11 102113946 102114008 -19729848 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1364 890 146 177 0 chr11 102114041 102114205 -19729651 - B2_Mm2 SINE B2 -2 193 1 2 1364 730 86 0 0 chr11 102114307 102114412 -19729444 - B1_Mus2 SINE Alu 0 147 43 2 1364 273 244 75 25 chr11 102114350 102114430 -19729426 - RLTR25B LTR ERVK -519 509 426 3 1364 777 298 0 5 chr11 102114437 102114636 -19729220 - B3A SINE B2 0 198 1 3 1364 486 174 11 0 chr11 102114896 102114988 -19728868 - B1_Mur4 SINE Alu 0 150 58 3 1364 261 281 112 45 chr11 102114990 102115124 -19728732 - ID_B1 SINE B4 -2 222 80 3 1364 265 213 120 0 chr11 102116094 102116169 -19727687 + B1_Mur4 SINE Alu 1 84 -66 3 1364 364 250 104 26 chr11 102116103 102116218 -19727638 + ID_B1 SINE B4 90 213 -11 3 1364 216 281 66 112 chr11 102117467 102117619 -19726237 + B1_Mur2 SINE Alu 4 148 -1 3 1364 736 184 188 11 chr11 102117622 102117798 -19726058 + B3 SINE B2 1 207 -9 3 1364 303 256 0 60 chr11 102117819 102117902 -19725954 + B4 SINE B4 215 292 0 3 1364 795 274 46 38 chr11 102118025 102118282 -19725574 + MTE2b LTR MaLR 64 317 -62 3 1364 680 254 17 17 chr11 102119931 102120107 -19723749 + B3A SINE B2 23 198 0 3 1364 209 159 0 22 chr11 102120171 102120182 -19723674 + A-rich Low_complexity Low_complexity 2 12 0 3 1364 1314 130 10 5 chr11 102120182 102120376 -19723480 + B2_Mm2 SINE B2 1 195 0 3 1364 209 159 0 22 chr11 102120376 102120409 -19723447 + A-rich Low_complexity Low_complexity 13 45 0 3 1364 281 264 33 136 chr11 102122465 102122563 -19721293 + MIR3 SINE MIR 35 118 -90 3 1364 1223 34 0 33 chr11 102122563 102122715 -19721141 - B1_Mus1 SINE Alu 0 148 2 3 1364 281 264 33 136 chr11 102122715 102122800 -19721056 + MIR3 SINE MIR 119 199 -9 3 1364 1015 229 14 32 chr11 102122946 102123163 -19720693 - B3 SINE B2 -1 215 3 3 1364 1316 20 0 0 chr11 102124396 102124543 -19719313 - B1_Mus1 SINE Alu 0 148 2 3 1364 287 130 0 18 chr11 102125165 102125220 -19718636 + (TCC)n Simple_repeat Simple_repeat 2 55 0 3 1364 607 148 187 8 chr11 102125399 102125522 -19718334 - B1_Mur3 SINE Alu -4 145 1 3 1364 1215 146 55 15 chr11 102126651 102126853 -19717003 - B3 SINE B2 -4 212 3 3 1364 221 224 86 0 chr11 102127053 102127111 -19716745 - B3A SINE B2 -80 118 56 3 1364 941 160 7 0 chr11 102129323 102129467 -19714389 + B1_Mus2 SINE Alu 3 147 0 3 1364 419 207 0 12 chr11 102130582 102130665 -19713191 - B1_Mur3 SINE Alu -63 86 5 3 1364 738 187 64 7 chr11 102130684 102130824 -19713032 - B1_Mus1 SINE Alu 0 148 1 3 1364 1291 112 16 5 chr11 102130844 102131032 -19712824 - B2_Mm1t SINE B2 -1 192 3 3 1364 442 282 7 27 chr11 102131390 102131536 -19712320 - ID_B1 SINE B4 0 224 82 3 1364 247 292 66 99 chr11 102131554 102131706 -19712150 - B1_Mur3 SINE Alu -1 148 2 3 1364 326 374 9 0 chr11 102131613 102131728 -19712128 - ID_B1 SINE B4 -48 176 61 3 1364 200 133 0 62 chr11 102131865 102131877 -19711979 + A-rich Low_complexity Low_complexity 1 10 0 3 1364 1211 55 7 0 chr11 102131877 102132023 -19711833 + B1_Mus2 SINE Alu 1 147 0 3 1364 200 133 0 62 chr11 102132023 102132058 -19711798 + A-rich Low_complexity Low_complexity 11 45 0 3 1364 896 44 0 0 chr11 102132074 102132188 -19711668 + B1_Mm SINE Alu 29 142 -5 3 1364 629 267 19 6 chr11 102132341 102132503 -19711353 + 7SK RNA RNA 2 165 -166 3 1364 559 235 14 49 chr11 102132527 102132670 -19711186 - B1_Mur2 SINE Alu -1 148 11 3 1364 1079 216 0 24 chr11 102132706 102132919 -19710937 - B3 SINE B2 -4 212 5 3 1364 220 167 28 0 chr11 102132947 102133019 -19710837 + (TTG)n Simple_repeat Simple_repeat 2 75 0 3 1364 198 0 0 0 chr11 102133026 102133048 -19710808 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 3 1364 895 145 27 7 chr11 102133454 102133600 -19710256 - B1_Mur4 SINE Alu -1 149 1 3 1364 394 247 0 22 chr11 102134220 102134311 -19709545 - B3A SINE B2 -11 187 99 3 1364 355 260 36 55 chr11 102134335 102134445 -19709411 - PB1D10 SINE Alu -9 108 1 3 1364 230 73 0 24 chr11 102134457 102134499 -19709357 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 3 1364 965 32 0 0 chr11 102134499 102134622 -19709234 - B1_Mus1 SINE Alu 0 148 26 3 1364 475 221 0 142 chr11 102134651 102134751 -19709105 - B1F2 SINE Alu -4 145 63 3 1364 207 0 0 0 chr11 102134751 102134774 -19709082 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1364 475 221 0 142 chr11 102134774 102134842 -19709014 - B1F2 SINE Alu -87 62 1 3 1364 572 273 191 27 chr11 102134871 102135059 -19708797 - ID_B1 SINE B4 -4 220 2 3 1364 445 333 0 0 chr11 102135069 102135186 -19708670 - PB1D7 SINE Alu -1 119 3 3 1364 480 154 131 28 chr11 102135370 102135477 -19708379 + B1F SINE Alu 31 148 -1 3 1364 1590 57 0 0 chr11 102135648 102135840 -19708016 + B2_Mm1t SINE B2 2 193 0 3 1364 1912 75 3 48 chr11 102135851 102136145 -19707711 + Lx LINE L1 6373 6653 -1 3 1364 1268 35 0 0 chr11 102136154 102136298 -19707558 + B1_Mus1 SINE Alu 5 148 0 3 1364 523 155 20 30 chr11 102136365 102136465 -19707391 + B1_Mur4 SINE Alu 46 144 -6 3 1364 659 276 81 0 chr11 102137040 102137214 -19706642 + ID_B1 SINE B4 1 188 -36 3 1364 370 303 141 38 chr11 102137220 102137313 -19706543 + ID_B1 SINE B4 8 211 -13 3 1364 615 141 0 0 chr11 102137313 102137405 -19706451 + B1_Mus2 SINE Alu 43 134 -13 3 1364 994 129 0 21 chr11 102138929 102139072 -19704784 + B1_Mur3 SINE Alu 1 140 -9 3 1364 189 0 0 0 chr11 102139444 102139465 -19704391 + (C)n Simple_repeat Simple_repeat 1 21 0 3 1364 289 243 114 0 chr11 102139710 102139780 -19704076 + PB1D10 SINE Alu 1 78 -39 3 1364 229 256 25 37 chr11 102140161 102140242 -19703614 + ID4 SINE ID 1 80 -3 3 1364 338 151 164 0 chr11 102140271 102140344 -19703512 + PB1D10 SINE Alu 32 116 -1 3 1364 1173 189 5 23 chr11 102141235 102141452 -19702404 + URR1B DNA MER1_type 1 213 -12 3 1364 1891 83 0 80 chr11 102141567 102141581 -19702275 - L1_Mus2 LINE L1 0 6566 6554 3 1364 1177 48 14 14 chr11 102141581 102141728 -19702128 - B1_Mus2 SINE Alu 0 147 1 3 1364 1453 75 38 0 chr11 102141735 102141921 -19701935 - B2_Mm2 SINE B2 -2 193 1 3 1364 1891 83 0 80 chr11 102141921 102142199 -19701657 - L1_Mus2 LINE L1 -19 6547 6290 3 1364 1150 61 0 39 chr11 102142210 102142363 -19701493 - B1_Mus1 SINE Alu 0 148 2 3 1364 1475 177 159 18 chr11 102142385 102142482 -19701374 - Lx5 LINE L1 -5 7045 6905 3 1364 279 0 0 0 chr11 102142482 102142513 -19701343 + (C)n Simple_repeat Simple_repeat 1 31 0 3 1364 1475 177 159 18 chr11 102142513 102142748 -19701108 - Lx5 LINE L1 -146 6904 6667 3 1364 262 254 13 53 chr11 102142881 102142956 -19700900 - B3A SINE B2 -36 162 91 3 1364 790 134 112 0 chr11 102143071 102143205 -19700651 + B1_Mur3 SINE Alu 1 149 0 3 1364 1510 38 43 16 chr11 102143208 102143395 -19700461 + B2_Mm1a SINE B2 2 193 0 3 1364 1154 74 0 13 chr11 102143406 102143556 -19700300 + B1_Mus1 SINE Alu 1 148 0 3 1364 279 0 0 0 chr11 102143556 102143587 -19700269 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1364 195 42 0 0 chr11 102143652 102143676 -19700180 + (TAA)n Simple_repeat Simple_repeat 2 25 0 3 1364 810 188 0 46 chr11 102143678 102143829 -19700027 + B1_Mur3 SINE Alu 5 148 -1 3 1364 24 0 0 0 chr11 102143835 102143859 -19699997 + AT_rich Low_complexity Low_complexity 1 24 0 3 1364 424 276 184 23 chr11 102143859 102144033 -19699823 + B4A SINE B4 82 283 -9 3 1364 234 128 0 0 chr11 102144035 102144074 -19699782 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1364 285 222 42 0 chr11 102144281 102144353 -19699503 + PB1D10 SINE Alu 42 116 -1 3 1364 1398 87 16 5 chr11 102144391 102144576 -19699280 + B2_Mm2 SINE B2 1 187 -8 3 1364 1204 41 0 14 chr11 102144627 102144774 -19699082 + B1_Mus2 SINE Alu 3 147 0 3 1364 287 104 21 0 chr11 102144774 102144822 -19699034 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1364 584 299 32 0 chr11 102144832 102144989 -19698867 + RSINE1 SINE B4 2 163 -2 3 1364 452 167 194 0 chr11 102145099 102145207 -19698649 - URR1A DNA MER1_type -68 158 30 3 1364 192 77 0 0 chr11 102145260 102145286 -19698570 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1364 885 212 16 11 chr11 102145306 102145497 -19698359 + B3A SINE B2 6 197 -1 3 1364 194 0 39 0 chr11 102145520 102145546 -19698310 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1364 1142 43 0 14 chr11 102145546 102145687 -19698169 - B1_Mus1 SINE Alu -9 139 1 3 1364 392 280 81 51 chr11 102146949 102147162 -19696694 - MIRb SINE MIR -8 260 29 3 1364 192 298 109 55 chr11 102147207 102147317 -19696539 - L2c LINE L2 -9 3378 3263 3 1364 350 280 25 33 chr11 102147574 102147696 -19696160 - ID_B1 SINE B4 -5 219 99 3 1364 666 159 133 16 chr11 102148119 102148247 -19695609 + B1_Mus1 SINE Alu 1 143 -5 3 1364 234 91 0 0 chr11 102148498 102148531 -19695325 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1364 24 53 0 0 chr11 102157481 102157519 -19686337 + GC_rich Low_complexity Low_complexity 1 38 0 3 1364 24 0 0 0 chr11 102157543 102157567 -19686289 + GC_rich Low_complexity Low_complexity 1 24 0 3 1364 26 30 0 0 chr11 102157651 102157684 -19686172 + GC_rich Low_complexity Low_complexity 1 33 0 3 1364 35 0 0 0 chr11 102157715 102157750 -19686106 + GC_rich Low_complexity Low_complexity 1 35 0 3 1364 30 0 0 0 chr11 102157830 102157860 -19685996 + GC_rich Low_complexity Low_complexity 1 30 0 3 1364 286 262 13 51 chr11 102157868 102158025 -19685831 + (CCCCG)n Simple_repeat Simple_repeat 3 153 0 3 1364 190 185 15 30 chr11 102158177 102158244 -19685612 + CT-rich Low_complexity Low_complexity 3 68 0 3 1364 493 174 87 40 chr11 102159438 102159564 -19684292 + B1_Mur2 SINE Alu 18 149 0 3 1364 260 111 295 77 chr11 102159615 102159693 -19684163 - PB1D10 SINE Alu 0 117 23 4 1364 180 0 0 0 chr11 102159724 102159744 -19684112 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1364 251 230 81 0 chr11 102159755 102159829 -19684027 - B3A SINE B2 -115 83 4 4 1364 1153 95 0 0 chr11 102159922 102160069 -19683787 + B1_Mus1 SINE Alu 2 148 0 4 1364 230 163 0 23 chr11 102160069 102160113 -19683743 + GA-rich Low_complexity Low_complexity 3 45 0 4 1364 328 308 53 59 chr11 102160178 102160216 -19683640 + MT2B2 LTR ERVL 124 271 -310 4 1364 640 91 42 0 chr11 102160216 102160327 -19683529 + B1_Mus2 SINE Alu 4 125 -24 4 1364 1181 63 0 0 chr11 102160737 102160880 -19682976 + B1_Mus1 SINE Alu 5 147 -1 4 1364 250 330 40 26 chr11 102161091 102161242 -19682614 - L2a LINE L2 -7 3419 3222 4 1364 621 250 42 0 chr11 102161313 102161457 -19682399 - B3 SINE B2 -27 189 40 4 1364 232 27 54 0 chr11 102161482 102161519 -19682337 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1364 1132 72 0 0 chr11 102161519 102161657 -19682199 - B1_Mus2 SINE Alu -9 138 1 4 1364 233 212 29 43 chr11 102161665 102161734 -19682122 - B1_Mur4 SINE Alu -54 96 29 4 1364 256 158 35 17 chr11 102161746 102161763 -19682093 - B2_Mm2 SINE B2 -136 59 41 4 1364 1415 62 62 0 chr11 102161763 102161942 -19681914 - B2_Mm2 SINE B2 -5 190 1 4 1364 256 158 35 17 chr11 102161942 102161982 -19681874 - B2_Mm2 SINE B2 -155 40 1 4 1364 1027 117 21 0 chr11 102162008 102162153 -19681703 + B1_Mus1 SINE Alu 1 148 0 4 1364 202 221 29 14 chr11 102162153 102162222 -19681634 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 4 1364 466 269 199 29 chr11 102162261 102162502 -19681354 + B4 SINE B4 1 282 -10 4 1364 358 242 49 0 chr11 102162789 102162912 -19680944 - L2a LINE L2 -216 3171 3040 4 1364 800 77 99 8 chr11 102162918 102163049 -19680807 + B1_Mur4 SINE Alu 7 149 -1 4 1364 1273 41 0 0 chr11 102163142 102163288 -19680568 + B1_Mm SINE Alu 2 147 0 4 1364 315 0 0 0 chr11 102163288 102163323 -19680533 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1364 885 272 4 77 chr11 102163348 102163583 -19680273 - ID_B1 SINE B4 -3 221 4 4 1364 1102 68 7 27 chr11 102163770 102163920 -19679936 - B1_Mus2 SINE Alu 0 147 1 4 1364 501 250 33 33 chr11 102163968 102163979 -19679877 - B1F1 SINE Alu -2 147 139 4 1364 216 0 0 0 chr11 102163979 102164003 -19679853 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1364 501 250 33 33 chr11 102164003 102164111 -19679745 - B1F1 SINE Alu -11 138 28 4 1364 252 254 0 0 chr11 102164167 102164222 -19679634 - PB1 SINE Alu -18 109 55 4 1364 1129 66 0 0 chr11 102164676 102164812 -19679044 - B1_Mus1 SINE Alu -11 137 2 4 1364 334 328 62 15 chr11 102164878 102165008 -19678848 + RSINE1 SINE B4 1 136 -29 4 1364 292 325 8 66 chr11 102165122 102165244 -19678612 - PB1D7 SINE Alu -5 115 1 4 1364 294 29 0 0 chr11 102166302 102166337 -19677519 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1364 432 0 0 0 chr11 102167025 102167073 -19676783 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1364 396 91 0 0 chr11 102167138 102167204 -19676652 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1364 186 43 0 0 chr11 102167792 102167815 -19676041 + (GAAA)n Simple_repeat Simple_repeat 3 25 0 4 1364 207 0 0 0 chr11 102167915 102167938 -19675918 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 4 1364 243 173 0 0 chr11 102168027 102168079 -19675777 + (CAT)n Simple_repeat Simple_repeat 3 54 0 4 1364 297 125 0 0 chr11 102168251 102168307 -19675549 + (TCC)n Simple_repeat Simple_repeat 2 57 0 4 1364 261 217 33 78 chr11 102169693 102169783 -19674073 + PB1D10 SINE Alu 28 113 -4 4 1364 25 0 0 0 chr11 102169850 102169875 -19673981 + GC_rich Low_complexity Low_complexity 1 25 0 4 1364 1126 55 14 7 chr11 102175975 102176121 -19667735 + B1_Mus2 SINE Alu 1 147 0 4 1364 21 100 0 0 chr11 102178253 102178323 -19665533 + GC_rich Low_complexity Low_complexity 1 70 0 4 1364 21 0 0 0 chr11 102178560 102178581 -19665275 + GC_rich Low_complexity Low_complexity 1 21 0 4 1364 24 32 0 0 chr11 102178646 102178677 -19665179 + GC_rich Low_complexity Low_complexity 1 31 0 4 1364 188 154 19 0 chr11 102179026 102179078 -19664778 + (CGG)n Simple_repeat Simple_repeat 3 55 0 4 1364 183 42 0 0 chr11 102179144 102179168 -19664688 + (CCCG)n Simple_repeat Simple_repeat 2 25 0 4 1364 244 300 0 0 chr11 102179215 102179275 -19664581 + G-rich Low_complexity Low_complexity 1 60 0 4 1364 237 308 27 7 chr11 102179385 102179532 -19664324 + G-rich Low_complexity Low_complexity 6 155 0 4 1364 217 0 0 57 chr11 102180326 102180361 -19663495 + (CCCG)n Simple_repeat Simple_repeat 3 35 0 4 1364 23 33 0 0 chr11 102180415 102180445 -19663411 + GC_rich Low_complexity Low_complexity 1 30 0 4 1364 22 70 0 0 chr11 102180538 102180581 -19663275 + AT_rich Low_complexity Low_complexity 1 43 0 4 1364 211 239 0 0 chr11 102181067 102181113 -19662743 + T-rich Low_complexity Low_complexity 1 46 0 4 1364 673 156 0 16 chr11 102182402 102182526 -19661330 - B1_Mur3 SINE Alu -1 148 27 4 1364 23 0 0 0 chr11 102182526 102182549 -19661307 + AT_rich Low_complexity Low_complexity 1 23 0 4 1364 622 185 352 13 chr11 102182747 102182906 -19660950 - B3 SINE B2 -3 213 1 4 1364 221 0 0 33 chr11 102182918 102182948 -19660908 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1364 831 66 3 0 chr11 102182950 102183076 -19660780 - B1_Mus1 SINE Alu -12 138 9 4 1364 1215 61 0 0 chr11 102183780 102183927 -19659929 + B1_Mus1 SINE Alu 2 148 0 4 1364 243 0 0 0 chr11 102184039 102184066 -19659790 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1364 732 226 0 35 chr11 102184121 102184295 -19659561 - RLTR20D LTR ERVK 0 578 411 4 1364 873 274 20 80 chr11 102184274 102184575 -19659281 - RLTR20D LTR ERVK -285 283 1 4 1364 415 311 21 69 chr11 102184776 102184921 -19658935 - RSINE1 SINE B4 -24 141 4 4 1364 479 302 168 20 chr11 102185023 102185273 -19658583 + B4A SINE B4 1 287 -5 4 1364 897 99 270 0 chr11 102185414 102185566 -19658290 - B2_Mm1t SINE B2 0 193 1 4 1364 745 190 28 7 chr11 102185568 102185711 -19658145 - B1_Mus1 SINE Alu 0 148 3 4 1364 230 341 62 0 chr11 102185716 102185845 -19658011 - L1M5 LINE L1 -660 5580 5444 4 1364 629 126 235 0 chr11 102185852 102185971 -19657885 - B1_Mus1 SINE Alu -1 147 1 4 1364 225 324 111 0 chr11 102185983 102186091 -19657765 - ID_B1 SINE B4 0 224 105 4 1364 393 245 0 21 chr11 102186127 102186223 -19657633 - PB1D7 SINE Alu 0 120 27 4 1364 469 94 0 56 chr11 102186356 102186446 -19657410 - L1Md_F2 LINE L1 0 6582 6498 4 1364 1654 47 0 0 chr11 102186573 102186766 -19657090 - B2_Mm1a SINE B2 0 193 1 4 1364 1503 68 16 0 chr11 102186831 102187023 -19656833 + B2_Mm2 SINE B2 1 195 0 4 1364 1118 61 0 0 chr11 102187031 102187163 -19656693 + B1_Mus1 SINE Alu 2 133 -15 4 1364 585 42 0 0 chr11 102187164 102187236 -19656620 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 4 1364 374 242 41 3 chr11 102187268 102187397 -19656459 - MLT2B4 LTR ERVL -78 489 348 4 1364 569 124 0 10 chr11 102187574 102187672 -19656184 + (TCC)n Simple_repeat Simple_repeat 3 99 0 4 1364 767 174 61 0 chr11 102187972 102188104 -19655752 - B1_Mus2 SINE Alu -7 140 1 4 1364 233 217 69 46 chr11 102188163 102188250 -19655606 - MTE-int LTR MaLR -1491 89 1 4 1364 565 150 130 0 chr11 102188277 102188377 -19655479 + B3 SINE B2 1 113 -103 4 1364 984 72 7 0 chr11 102188444 102188582 -19655274 - B1_Mus2 SINE Alu 0 147 9 4 1364 308 337 65 22 chr11 102188650 102188852 -19655004 - MLT2B3 LTR ERVL -151 566 351 4 1364 186 43 0 0 chr11 102189158 102189181 -19654675 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 4 1364 324 64 0 0 chr11 102189455 102189502 -19654354 + (TTGG)n Simple_repeat Simple_repeat 1 47 0 4 1364 974 25 0 0 chr11 102189505 102189625 -19654231 - B1_Mus2 SINE Alu -6 141 22 4 1364 207 0 0 0 chr11 102189627 102189650 -19654206 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1364 528 196 41 95 chr11 102189650 102189797 -19654059 - B1_Mur4 SINE Alu -9 141 3 4 1364 566 294 26 53 chr11 102189797 102189896 -19653960 - ID_B1 SINE B4 -127 97 3 4 1364 275 301 39 64 chr11 102189899 102190055 -19653801 - LTR73 LTR ERV1 -303 269 118 4 1364 1221 21 0 27 chr11 102190469 102190616 -19653240 + B1_Mm SINE Alu 5 147 0 4 1364 24 0 0 0 chr11 102190616 102190640 -19653216 + AT_rich Low_complexity Low_complexity 1 24 0 4 1364 2262 163 38 16 chr11 102190647 102191090 -19652766 - RLTR11B LTR ERVK 0 453 1 4 1364 683 83 64 0 chr11 102191226 102191335 -19652521 + B1_Mus1 SINE Alu 33 148 0 4 1364 207 0 0 0 chr11 102191337 102191360 -19652496 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1364 246 319 14 0 chr11 102191497 102191566 -19652290 + B4 SINE B4 5 74 -218 4 1364 1131 62 0 40 chr11 102191799 102191951 -19651905 + B1_Mm SINE Alu 1 146 -1 4 1364 582 295 84 0 chr11 102192192 102192358 -19651498 - B4A SINE B4 -111 181 2 4 1364 1418 94 5 0 chr11 102192579 102192771 -19651085 - B2_Mm1a SINE B2 0 193 1 4 1364 1367 235 50 109 chr11 102193035 102193494 -19650362 - RLTR41 LTR ERV1 -14 432 1 4 1364 1648 5 0 0 chr11 102193583 102193768 -19650088 - L1Md_A LINE L1 -1 6581 6397 4 1364 776 65 0 9 chr11 102193802 102193910 -19649946 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 4 1364 827 162 0 49 chr11 102193910 102194053 -19649803 - B1_Mus1 SINE Alu -12 136 1 4 1364 522 191 26 17 chr11 102194060 102194177 -19649679 - PB1D9 SINE Alu -2 118 1 4 1364 210 192 0 19 chr11 102194186 102194239 -19649617 + T-rich Low_complexity Low_complexity 3 54 0 4 1364 262 129 108 46 chr11 102194439 102194504 -19649352 + RMER15 LTR ERVL 1 69 -506 5 1364 708 250 36 15 chr11 102194512 102194707 -19649149 + RMER15 LTR ERVL 27 225 -350 5 1364 1188 75 0 0 chr11 102194839 102194985 -19648871 + B1_Mus1 SINE Alu 3 148 0 5 1364 180 0 0 0 chr11 102195010 102195030 -19648826 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1364 637 123 19 19 chr11 102195107 102195215 -19648641 - MTC LTR MaLR -151 270 163 5 1364 214 182 0 0 chr11 102195664 102195708 -19648148 + T-rich Low_complexity Low_complexity 1 44 0 5 1364 348 127 0 0 chr11 102195730 102195785 -19648071 + (T)n Simple_repeat Simple_repeat 1 55 0 5 1364 894 50 17 0 chr11 102195785 102195905 -19647951 - B1_Mus1 SINE Alu 0 148 27 5 1364 389 148 0 0 chr11 102195926 102195987 -19647869 - B3 SINE B2 -155 61 1 5 1364 258 32 0 0 chr11 102196267 102196298 -19647558 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1364 323 305 180 22 chr11 102196624 102196802 -19647054 - L1MCa LINE L1 -6032 476 271 5 1364 275 249 142 21 chr11 102196963 102197263 -19646593 - L1MD LINE L1 -2682 3464 3125 5 1364 510 31 0 0 chr11 102197263 102197327 -19646529 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1364 297 0 0 0 chr11 102197327 102197359 -19646497 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1364 317 273 88 29 chr11 102197362 102197464 -19646392 - PB1D9 SINE Alu -12 108 1 5 1364 254 70 0 65 chr11 102197476 102197522 -19646334 + (TCTCCC)n Simple_repeat Simple_repeat 3 45 0 5 1364 325 273 11 0 chr11 102197558 102197646 -19646210 - B1F SINE Alu -22 127 39 5 1364 258 322 40 40 chr11 102197734 102197883 -19645973 + RSINE1 SINE B4 3 151 -14 5 1364 276 149 0 0 chr11 102197895 102197942 -19645914 + (TAA)n Simple_repeat Simple_repeat 1 47 0 5 1364 448 147 0 0 chr11 102198004 102198072 -19645784 - B1_Mur4 SINE Alu -64 86 19 5 1364 1115 76 7 27 chr11 102198078 102198227 -19645629 + B1_Mm SINE Alu 2 147 0 5 1364 257 268 0 0 chr11 102198269 102198340 -19645516 - L1MD LINE L1 -3384 2762 2692 5 1364 355 78 0 0 chr11 102198363 102198414 -19645442 - B1_Mus2 SINE Alu -9 138 88 5 1364 602 327 25 0 chr11 102198409 102198571 -19645285 + ID_B1 SINE B4 53 218 -6 5 1364 250 303 110 10 chr11 102198591 102198629 -19645227 + PB1D10 SINE Alu 1 37 -80 5 1364 186 43 0 0 chr11 102198629 102198652 -19645204 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1364 250 303 110 10 chr11 102198652 102198713 -19645143 + PB1D10 SINE Alu 38 109 -8 5 1364 1251 120 16 27 chr11 102198809 102198997 -19644859 + B2_Mm2 SINE B2 1 186 -9 5 1364 896 160 14 0 chr11 102199008 102199152 -19644704 + B1_Mus2 SINE Alu 1 146 -1 5 1364 393 280 0 48 chr11 102199171 102199276 -19644580 + ID_B1 SINE B4 81 180 -44 5 1364 414 296 132 16 chr11 102199321 102199503 -19644353 + RMER21B LTR ERV1 365 567 -275 5 1364 707 207 89 24 chr11 102200274 102200442 -19643414 - ID_B1 SINE B4 -8 216 38 5 1364 360 246 154 0 chr11 102200453 102200563 -19643293 - ID_B1 SINE B4 -3 221 95 5 1364 1105 164 29 29 chr11 102201039 102201246 -19642610 - B3 SINE B2 -9 207 1 5 1364 2611 135 89 51 chr11 102201315 102201351 -19642505 - RLTR12A LTR ERVK 0 568 534 5 1364 1679 31 0 0 chr11 102201351 102201543 -19642313 + B2_Mm1a SINE B2 2 193 0 5 1364 2611 135 89 51 chr11 102201543 102202036 -19641820 - RLTR12A LTR ERVK -35 533 19 5 1364 567 77 0 0 chr11 102202057 102202135 -19641721 + B1_Mus1 SINE Alu 2 79 -69 5 1364 331 200 34 91 chr11 102202058 102202146 -19641710 + MT2B LTR ERVL 167 249 -352 5 1364 642 151 16 25 chr11 102202144 102202217 -19641639 - RMER4A LTR ERVK -68 398 326 5 1364 499 133 0 0 chr11 102202217 102202307 -19641549 - L1Md_F2 LINE L1 -1 6581 6492 5 1364 642 151 16 25 chr11 102202307 102202355 -19641501 - RMER4A LTR ERVK -141 325 278 5 1364 697 173 0 23 chr11 102202374 102202504 -19641352 - RMER4A LTR ERVK -308 158 32 5 1364 259 146 0 20 chr11 102202527 102202576 -19641280 - RMER4A LTR ERVK -418 48 1 5 1364 737 170 0 175 chr11 102202577 102202777 -19641079 + URR1A DNA MER1_type 62 226 0 5 1364 323 193 0 11 chr11 102202826 102202915 -19640941 + (ATG)n Simple_repeat Simple_repeat 3 90 0 5 1364 449 218 118 0 chr11 102203199 102203309 -19640547 + B1F1 SINE Alu 27 149 0 5 1364 311 220 45 107 chr11 102203274 102203386 -19640470 + RLTR25B LTR ERVK 405 509 -519 5 1364 672 87 9 28 chr11 102203325 102203432 -19640424 + B1_Mm SINE Alu 43 147 0 5 1364 216 0 0 0 chr11 102203432 102203456 -19640400 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1364 1011 90 8 0 chr11 102203528 102203662 -19640194 + B1_Mus2 SINE Alu 1 135 -12 5 1364 216 67 0 0 chr11 102203663 102203693 -19640163 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1364 564 195 125 0 chr11 102203722 102203850 -19640006 + B1_Mur4 SINE Alu 6 149 -1 5 1364 441 0 0 0 chr11 102203949 102203998 -19639858 + (GGA)n Simple_repeat Simple_repeat 3 51 0 5 1364 324 222 13 5 chr11 102204182 102204273 -19639583 + B1F1 SINE Alu 9 97 -23 5 1364 239 248 73 89 chr11 102204273 102204300 -19639556 + B4A SINE B4 103 206 -86 5 1364 685 52 0 20 chr11 102204825 102204924 -19638932 + B1_Mur4 SINE Alu 54 150 0 5 1364 228 182 0 0 chr11 102204933 102204977 -19638879 + GA-rich Low_complexity Low_complexity 2 45 0 5 1364 765 281 25 75 chr11 102204978 102205259 -19638597 + B4A SINE B4 2 268 -24 5 1364 792 260 53 41 chr11 102205240 102205485 -19638371 + B4A SINE B4 44 291 -1 5 1364 427 156 39 0 chr11 102205553 102205630 -19638226 + RLTR24 LTR ERV1 402 481 -48 5 1364 324 0 0 0 chr11 102205689 102205725 -19638131 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1364 232 286 0 13 chr11 102205742 102205784 -19638072 + polypurine Low_complexity Low_complexity 2 43 0 5 1364 949 121 50 0 chr11 102205784 102205924 -19637932 + B1_Mm SINE Alu 1 147 0 5 1364 232 286 0 13 chr11 102205924 102205959 -19637897 + polypurine Low_complexity Low_complexity 44 77 0 5 1364 630 254 0 0 chr11 102206098 102206224 -19637632 + RSINE1 SINE B4 3 128 -37 5 1364 308 227 149 15 chr11 102206308 102206375 -19637481 - B1_Mm SINE Alu -7 110 35 5 1364 263 254 16 0 chr11 102206326 102206389 -19637467 - RLTR25A LTR ERVK -544 559 496 5 1364 287 104 368 0 chr11 102206403 102206486 -19637370 + B3 SINE B2 2 119 -76 5 1364 233 75 25 0 chr11 102206515 102206555 -19637301 + (CATA)n Simple_repeat Simple_repeat 4 44 0 5 1364 554 160 185 39 chr11 102206563 102206693 -19637163 + B1_Mur3 SINE Alu 1 149 0 5 1364 1268 70 6 0 chr11 102207124 102207296 -19636560 + B2_Mm2 SINE B2 1 173 -22 5 1364 368 142 274 0 chr11 102207332 102207445 -19636411 + B2_Mm2 SINE B2 47 190 -5 5 1364 2004 176 122 79 chr11 102207460 102207966 -19635890 - RLTR24 LTR ERV1 -1 528 1 5 1364 232 277 46 0 chr11 102207972 102208033 -19635823 + B1F1 SINE Alu 4 67 -82 5 1364 1296 134 153 9 chr11 102208033 102208380 -19635476 - RMER17C LTR ERVK 0 410 14 5 1364 387 105 0 136 chr11 102208378 102208466 -19635390 + B1_Mur3 SINE Alu 73 148 -1 5 1364 357 321 8 175 chr11 102208482 102208662 -19635194 + ID_B1 SINE B4 2 151 -73 5 1364 1211 68 0 0 chr11 102208662 102208808 -19635048 + B1_Mus2 SINE Alu 2 147 0 5 1364 357 321 8 175 chr11 102208808 102208895 -19634961 + ID_B1 SINE B4 152 224 0 5 1364 1199 48 0 7 chr11 102209926 102210073 -19633783 + B1_Mus2 SINE Alu 1 146 -1 5 1364 197 365 19 19 chr11 102210272 102210378 -19633478 - MIRb SINE MIR -33 235 130 5 1364 24 53 0 0 chr11 102210510 102210548 -19633308 + AT_rich Low_complexity Low_complexity 1 38 0 5 1364 402 74 0 0 chr11 102210848 102210902 -19632954 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 5 1364 389 250 40 48 chr11 102211187 102211313 -19632543 - MIR SINE MIR -65 197 73 5 1364 815 285 39 5 chr11 102212098 102212306 -19631550 - ID_B1 SINE B4 0 224 10 5 1364 187 299 190 22 chr11 102213253 102213390 -19630466 - MIR3 SINE MIR -14 194 35 5 1364 417 194 15 15 chr11 102215847 102215983 -19627873 + (TCCA)n Simple_repeat Simple_repeat 3 138 0 5 1364 1285 7 0 39 chr11 102216022 102216037 -19627819 - B1_Mus2 SINE Alu 0 147 138 5 1364 252 77 0 0 chr11 102216037 102216076 -19627780 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1364 1285 7 0 39 chr11 102216076 102216213 -19627643 - B1_Mus2 SINE Alu -10 137 1 5 1364 1464 74 11 0 chr11 102216213 102216402 -19627454 - B2_Mm2 SINE B2 -1 194 3 5 1364 225 239 101 11 chr11 102216559 102216648 -19627208 + BC1_Mm scRNA scRNA 1 97 -55 5 1364 1121 52 15 0 chr11 102216671 102216807 -19627049 + B1_Mm SINE Alu 1 138 -9 5 1364 495 0 0 0 chr11 102216807 102216862 -19626994 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1364 552 241 0 78 chr11 102218619 102218772 -19625084 + B1F SINE Alu 1 141 -8 5 1364 198 0 0 0 chr11 102220053 102220075 -19623781 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1364 217 385 43 27 chr11 102223227 102223411 -19620445 + L2 LINE L2 2895 3081 -338 5 1364 1189 22 0 0 chr11 102224797 102224931 -19618925 + B1_Mus2 SINE Alu 1 134 -13 5 1364 324 0 0 0 chr11 102224931 102224967 -19618889 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1364 180 369 160 21 chr11 102225343 102225487 -19618369 - MIRb SINE MIR -102 166 3 5 1364 406 330 49 49 chr11 102225545 102225749 -19618107 + MIR SINE MIR 31 234 -28 5 1364 816 161 8 213 chr11 102227445 102227554 -19616302 + ID_B1 SINE B4 2 101 -123 5 1364 1251 47 0 0 chr11 102227554 102227702 -19616154 - B1_Mus1 SINE Alu 0 148 1 5 1364 816 161 8 213 chr11 102227702 102227845 -19616011 + ID_B1 SINE B4 102 202 -22 5 1364 423 56 0 0 chr11 102228297 102228351 -19615505 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 5 1364 1058 43 0 7 chr11 102228360 102228499 -19615357 - B1_Mus2 SINE Alu -2 145 8 5 1364 1490 37 31 21 chr11 102228503 102228533 -19615323 - B2_Mm1a SINE B2 0 193 161 5 1364 207 0 0 0 chr11 102228533 102228556 -19615300 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1364 1490 37 31 21 chr11 102228556 102228716 -19615140 - B2_Mm1a SINE B2 -33 160 1 5 1364 21 0 0 0 chr11 102228716 102228737 -19615119 + AT_rich Low_complexity Low_complexity 1 21 0 5 1364 670 211 8 15 chr11 102228741 102228871 -19614985 + B1_Mm SINE Alu 3 131 -16 6 1364 180 0 0 0 chr11 102228871 102228891 -19614965 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 1364 839 208 95 40 chr11 102228908 102229108 -19614748 - ID_B1 SINE B4 -12 212 2 6 1364 189 0 0 0 chr11 102229216 102229237 -19614619 + (GGA)n Simple_repeat Simple_repeat 2 22 0 6 1364 537 16 0 0 chr11 102230199 102230261 -19613595 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1364 217 350 10 10 chr11 102231216 102231317 -19612539 + C-rich Low_complexity Low_complexity 4 104 0 6 1364 209 133 44 0 chr11 102231474 102231519 -19612337 + L2b LINE L2 3093 3139 -236 6 1364 418 304 160 4 chr11 102231560 102231836 -19612020 - MLT1J LTR MaLR 0 512 194 6 1364 248 303 83 0 chr11 102232070 102232162 -19611694 + B4A SINE B4 134 234 -58 6 1364 528 211 110 22 chr11 102232162 102232298 -19611558 + RSINE1 SINE B4 3 150 -15 6 1364 660 241 28 14 chr11 102232339 102232482 -19611374 + B1_Mur1 SINE Alu 1 145 -4 6 1364 284 211 52 13 chr11 102232482 102232559 -19611297 + B4A SINE B4 213 292 0 6 1364 577 144 6 42 chr11 102232559 102232726 -19611130 + (CA)n Simple_repeat Simple_repeat 1 161 0 6 1364 469 159 6 56 chr11 102232777 102232937 -19610919 + (CATA)n Simple_repeat Simple_repeat 3 154 0 6 1364 250 232 13 80 chr11 102233035 102233110 -19610746 + PB1 SINE Alu 25 94 -33 6 1364 702 35 0 0 chr11 102233131 102233216 -19610640 + (GAAAA)n Simple_repeat Simple_repeat 2 86 0 6 1364 898 123 86 6 chr11 102233301 102233464 -19610392 - URR1B DNA MER1_type -49 176 1 6 1364 315 275 0 12 chr11 102233881 102233962 -19609894 + L4 LINE RTE 1733 1812 -217 6 1364 550 0 29 0 chr11 102234683 102234753 -19609103 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1364 309 305 61 61 chr11 102235313 102235477 -19608379 + RSINE1 SINE B4 2 165 0 6 1364 23 33 0 0 chr11 102235484 102235514 -19608342 + AT_rich Low_complexity Low_complexity 1 30 0 6 1364 462 251 230 17 chr11 102235523 102235697 -19608159 + ID_B1 SINE B4 9 219 -5 6 1364 870 154 42 0 chr11 102235700 102235843 -19608013 + B1_Mur2 SINE Alu 1 149 0 6 1364 243 0 0 0 chr11 102235875 102235902 -19607954 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1364 1051 109 0 7 chr11 102235904 102236052 -19607804 + B1_Mus2 SINE Alu 1 147 0 6 1364 280 178 14 14 chr11 102236060 102236134 -19607722 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1365 425 176 265 0 chr11 102238256 102238358 -19605498 + B3 SINE B2 1 129 -87 6 1365 283 164 48 32 chr11 102238368 102238431 -19605425 + B1_Mur4 SINE Alu 87 150 0 6 1365 281 26 26 0 chr11 102238431 102238469 -19605387 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 6 1365 968 236 5 42 chr11 102239416 102239633 -19604223 + B4 SINE B4 15 223 -69 6 1365 1172 82 0 0 chr11 102239650 102239797 -19604059 + B1_Mus2 SINE Alu 1 147 0 6 1365 180 0 0 0 chr11 102239797 102239817 -19604039 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1365 1198 164 180 22 chr11 102240160 102240471 -19603385 + ORR1D1 LTR MaLR 4 363 -11 6 1365 1837 146 40 22 chr11 102240475 102240798 -19603058 + ORR1A4 LTR MaLR 1 329 0 6 1365 629 203 0 48 chr11 102240850 102240974 -19602882 + PB1D9 SINE Alu 3 120 0 6 1365 450 91 308 60 chr11 102241028 102241145 -19602711 + B2_Mm2 SINE B2 47 192 -3 6 1365 480 159 37 0 chr11 102241152 102241259 -19602597 + L1MC3 LINE L1 6989 7099 -686 6 1365 543 277 113 93 chr11 102241407 102241471 -19602385 + Lx8 LINE L1 6878 6935 -538 6 1365 1042 85 42 7 chr11 102241471 102241613 -19602243 - B1_Mus2 SINE Alu 0 147 1 6 1365 543 277 113 93 chr11 102241613 102241795 -19602061 + Lx8 LINE L1 6936 7129 -344 6 1365 849 57 16 24 chr11 102241796 102241922 -19601934 + B1_Mus2 SINE Alu 23 147 0 6 1365 310 323 16 16 chr11 102241931 102242057 -19601799 + Lx8 LINE L1 7121 7246 -227 6 1365 387 113 0 0 chr11 102242142 102242213 -19601643 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1365 198 0 0 0 chr11 102242213 102242235 -19601621 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1365 296 260 88 59 chr11 102242326 102242428 -19601428 + 5S rRNA rRNA 5 109 -12 6 1365 250 274 0 0 chr11 102242534 102242596 -19601260 + L1MC3 LINE L1 7345 7406 -379 6 1365 631 329 59 40 chr11 102242599 102242903 -19600953 + MLT2C1 LTR ERVL 1 310 -87 6 1365 263 314 117 19 chr11 102243092 102243306 -19600550 + L1M4 LINE L1 3873 4107 -2039 6 1365 1036 159 142 5 chr11 102243442 102243632 -19600224 + B3 SINE B2 1 216 0 6 1365 1244 54 0 0 chr11 102243648 102243796 -19600060 + B1_Mus1 SINE Alu 1 148 0 6 1365 290 323 37 31 chr11 102243812 102243975 -19599881 + L1M2 LINE L1 5278 5441 -859 6 1365 1047 115 0 13 chr11 102243976 102244126 -19599730 + B1_Mus1 SINE Alu 1 148 0 6 1365 188 67 33 0 chr11 102244203 102244233 -19599623 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 6 1365 480 274 31 44 chr11 102244282 102244442 -19599414 + RSINE1 SINE B4 8 165 0 6 1365 1382 106 26 0 chr11 102244482 102244671 -19599185 + B2_Mm2 SINE B2 2 195 0 6 1365 251 211 111 111 chr11 102244682 102244695 -19599161 + PB1D10 SINE Alu 1 117 0 6 1365 366 211 192 0 chr11 102244695 102244799 -19599057 + ID_B1 SINE B4 100 223 -1 6 1365 669 25 0 0 chr11 102245048 102245127 -19598729 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 6 1365 305 288 74 20 chr11 102245477 102245626 -19598230 - MERVL-int LTR ERVL -2142 3619 3463 6 1365 186 43 0 0 chr11 102245664 102245687 -19598169 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1365 275 232 67 57 chr11 102245700 102245805 -19598051 - PB1D10 SINE Alu 0 117 12 6 1365 290 167 17 0 chr11 102245811 102245871 -19597985 + CT-rich Low_complexity Low_complexity 3 63 0 6 1365 316 336 43 7 chr11 102245969 102246110 -19597746 - MERVL-int LTR ERVL -2333 3152 3008 6 1365 210 71 0 0 chr11 102246142 102246170 -19597686 + (TTC)n Simple_repeat Simple_repeat 2 29 0 6 1365 1075 64 50 0 chr11 102246170 102246310 -19597546 - B1_Mus1 SINE Alu 0 148 2 6 1365 22 35 0 0 chr11 102246395 102246424 -19597432 + GC_rich Low_complexity Low_complexity 1 29 0 6 1365 384 284 224 0 chr11 102246895 102247029 -19596827 - RSINE1 SINE B4 0 165 2 6 1365 285 303 22 0 chr11 102247048 102247137 -19596719 - MERVL-int LTR ERVL -3536 2178 2088 6 1365 263 343 43 48 chr11 102247670 102247878 -19595978 - MERVL-int LTR ERVL -3642 1354 1148 6 1365 252 154 0 0 chr11 102248523 102248575 -19595281 + T-rich Low_complexity Low_complexity 1 52 0 6 1365 1237 49 0 0 chr11 102248577 102248721 -19595135 - B1_Mm SINE Alu 0 147 4 6 1365 960 99 32 13 chr11 102249137 102249291 -19594565 - B2_Mm1a SINE B2 0 193 37 6 1365 784 73 203 0 chr11 102249398 102249521 -19594335 + B1_Mus1 SINE Alu 1 148 0 6 1365 644 286 20 37 chr11 102249567 102249770 -19594086 + Lx8 LINE L1 6513 6855 -789 6 1365 1208 43 0 0 chr11 102249787 102249925 -19593931 + B1_Mus1 SINE Alu 3 140 -8 6 1365 495 0 0 0 chr11 102249926 102249981 -19593875 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1365 594 41 0 0 chr11 102249981 102250053 -19593803 + (GGAAA)n Simple_repeat Simple_repeat 4 76 0 6 1365 1152 59 0 0 chr11 102250053 102250189 -19593667 + B1_Mm SINE Alu 3 138 -9 6 1365 345 279 78 14 chr11 102250201 102250343 -19593513 + L1M4b LINE L1 2216 2366 -4968 6 1365 273 29 0 0 chr11 102250405 102250439 -19593417 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1365 807 163 13 26 chr11 102250512 102250663 -19593193 - B1_Mur3 SINE Alu 0 149 1 6 1365 374 57 19 0 chr11 102250663 102250716 -19593140 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1365 1736 184 29 86 chr11 102250742 102250966 -19592890 + ORR1B1 LTR MaLR 1 226 -168 6 1365 1693 31 0 0 chr11 102250966 102251158 -19592698 + B2_Mm1a SINE B2 2 193 0 6 1365 1736 184 29 86 chr11 102251158 102251342 -19592514 + ORR1B1 LTR MaLR 227 386 -8 6 1365 761 266 5 48 chr11 102251343 102251529 -19592327 - B4A SINE B4 -82 210 33 6 1365 1290 34 0 0 chr11 102251561 102251708 -19592148 + B1_Mm SINE Alu 1 147 0 6 1365 321 89 0 0 chr11 102251708 102251753 -19592103 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1365 226 275 72 0 chr11 102252020 102252089 -19591767 + LTR33A LTR ERVL 81 154 -366 6 1365 647 149 41 0 chr11 102252484 102252610 -19591246 + B1_Mur2 SINE Alu 9 144 -5 6 1365 209 196 0 18 chr11 102252611 102252668 -19591188 + GA-rich Low_complexity Low_complexity 2 57 0 6 1365 1281 40 0 0 chr11 102252702 102252850 -19591006 - B1_Mus1 SINE Alu 0 148 1 6 1365 316 224 66 0 chr11 102253004 102253080 -19590776 + ID4_ SINE ID 2 82 -1 6 1365 289 274 13 0 chr11 102253309 102253394 -19590462 + BC1_Mm scRNA scRNA 5 90 -62 6 1365 222 261 46 0 chr11 102253403 102253468 -19590388 + B1F2 SINE Alu 44 111 -38 6 1365 682 201 63 21 chr11 102253499 102253641 -19590215 + B1F2 SINE Alu 1 148 -1 6 1365 595 247 101 0 chr11 102253674 102253893 -19589963 + L1M4b LINE L1 5939 6179 -827 6 1365 22 70 0 0 chr11 102254924 102254967 -19588889 + GC_rich Low_complexity Low_complexity 1 43 0 6 1365 198 0 0 0 chr11 102257385 102257407 -19586449 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1365 784 158 22 22 chr11 102257408 102257544 -19586312 - B1_Mur2 SINE Alu -13 136 1 6 1365 678 241 13 6 chr11 102257586 102257745 -19586111 - RSINE1 SINE B4 -2 163 4 6 1365 21 36 0 0 chr11 102260145 102260173 -19583683 + AT_rich Low_complexity Low_complexity 1 28 0 6 1365 236 265 90 0 chr11 102262434 102262576 -19581280 + MIRb SINE MIR 22 172 -36 6 1365 473 335 53 19 chr11 102262650 102262912 -19580944 + L4 LINE RTE 1758 2028 -1 6 1365 542 273 8 8 chr11 102262924 102263057 -19580799 + L2c LINE L2 3254 3386 -1 6 1365 297 182 0 0 chr11 102264159 102264214 -19579642 - B4 SINE B4 -74 218 164 6 1365 269 229 265 0 chr11 102264214 102264242 -19579614 - B1_Mur1 SINE Alu -8 141 37 6 1365 500 258 0 24 chr11 102264284 102264407 -19579449 - PB1D7 SINE Alu 0 120 1 7 1365 308 279 78 43 chr11 102266563 102266679 -19577177 + B4 SINE B4 61 180 -112 7 1365 462 197 11 5 chr11 102266592 102266697 -19577159 + B1_Mur4 SINE Alu 5 107 -13 7 1365 996 72 14 55 chr11 102267274 102267420 -19576436 - B1_Mus1 SINE Alu -8 140 1 7 1365 202 374 36 0 chr11 102268134 102268217 -19575639 - MIR SINE MIR -63 145 60 7 1365 25 51 0 0 chr11 102268944 102268983 -19574873 + GC_rich Low_complexity Low_complexity 1 39 0 7 1365 1230 61 0 0 chr11 102270163 102270310 -19573546 + B1_Mm SINE Alu 1 147 0 7 1365 245 146 21 0 chr11 102270481 102270529 -19573327 + CT-rich Low_complexity Low_complexity 2 50 0 7 1365 418 248 182 8 chr11 102270557 102270683 -19573173 - B1F SINE Alu 0 149 2 7 1365 518 274 10 72 chr11 102271350 102271400 -19572456 - ID_B1 SINE B4 -14 278 128 7 1365 809 171 0 7 chr11 102271400 102271541 -19572315 - B1_Mur2 SINE Alu 0 149 10 7 1365 518 274 10 72 chr11 102271541 102271556 -19572300 - ID_B1 SINE B4 -14 127 76 7 1365 1231 102 30 70 chr11 102271693 102271845 -19572011 - B2_Mm1t SINE B2 0 193 36 7 1365 1611 47 16 0 chr11 102271845 102272035 -19571821 + B2_Mm1a SINE B2 1 193 0 7 1365 1231 102 30 70 chr11 102272035 102272083 -19571773 - B2_Mm1t SINE B2 -158 35 1 7 1365 1074 57 42 7 chr11 102272111 102272253 -19571603 - B1_Mus1 SINE Alu 0 148 2 7 1365 409 248 98 60 chr11 102272321 102272454 -19571402 - B1_Mur1 SINE Alu -5 144 7 7 1365 251 238 16 0 chr11 102272520 102272583 -19571273 + tRNA-Ala-GCY_ tRNA tRNA 3 66 -9 7 1365 335 275 0 0 chr11 102273096 102273165 -19570691 + ID4_ SINE ID 4 72 -11 7 1365 266 263 0 0 chr11 102273199 102273256 -19570600 + MER20B DNA MER1_type 1 57 -726 7 1365 1208 281 3 14 chr11 102273466 102273755 -19570101 - B4 SINE B4 -2 290 5 7 1365 781 281 35 5 chr11 102273784 102273984 -19569872 - B3 SINE B2 -6 210 5 7 1365 22 0 0 0 chr11 102273991 102274013 -19569843 + AT_rich Low_complexity Low_complexity 1 22 0 7 1365 1013 179 39 15 chr11 102274019 102274223 -19569633 + B3 SINE B2 6 214 -2 7 1365 255 281 33 22 chr11 102274273 102274364 -19569492 + MER20B DNA MER1_type 614 705 -78 7 1365 268 303 0 33 chr11 102274415 102274507 -19569349 - PB1D10 SINE Alu -20 97 9 7 1365 267 305 45 45 chr11 102274433 102274543 -19569313 - B4A SINE B4 -125 167 58 7 1365 360 223 7 160 chr11 102274929 102275073 -19568783 - PB1 SINE Alu -3 124 3 7 1365 693 189 87 54 chr11 102275073 102275132 -19568724 - ID_B1 SINE B4 -134 90 26 7 1365 303 167 137 14 chr11 102275137 102275210 -19568646 - PB1D10 SINE Alu -1 116 35 7 1365 223 298 0 34 chr11 102275401 102275460 -19568396 - ID4 SINE ID -26 57 1 7 1365 1456 65 11 0 chr11 102275465 102275651 -19568205 - B2_Mm1t SINE B2 -5 188 1 7 1365 203 365 101 14 chr11 102275967 102276106 -19567750 - MIRc SINE MIR -3 265 115 7 1365 321 26 0 0 chr11 102276109 102276147 -19567709 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1365 729 297 132 76 chr11 102276158 102276698 -19567158 + RMER15 LTR ERVL 4 573 -2 7 1365 772 359 28 16 chr11 102276701 102277024 -19566832 + RMER15-int LTR ERVL 2 328 -4671 7 1365 1064 52 73 0 chr11 102277085 102277221 -19566635 + B1_Mus1 SINE Alu 1 146 -2 7 1365 423 315 75 35 chr11 102277308 102277535 -19566321 + RMER15-int LTR ERVL 528 763 -4236 7 1365 1411 100 11 0 chr11 102277622 102277812 -19566044 + B2_Mm1t SINE B2 2 193 0 7 1365 1853 130 19 19 chr11 102277953 102277997 -19565859 - MTC LTR MaLR -1 420 379 7 1365 4183 42 18 4 chr11 102277997 102278493 -19565363 + RLTR1C LTR ERV1 1 503 0 7 1365 1853 130 19 19 chr11 102278493 102278761 -19565095 - MTC LTR MaLR -43 378 108 7 1365 550 165 0 64 chr11 102278796 102278906 -19564950 + B1_Mur3 SINE Alu 24 126 -23 7 1365 499 54 21 32 chr11 102278907 102279002 -19564854 + (GA)n Simple_repeat Simple_repeat 1 94 0 7 1365 520 174 9 60 chr11 102279003 102279119 -19564737 - MTC LTR MaLR -311 110 1 7 1365 832 233 120 10 chr11 102279140 102279348 -19564508 + RMER15-int LTR ERVL 1068 1298 -3701 7 1365 742 231 83 49 chr11 102279359 102279564 -19564292 + B3 SINE B2 2 213 -3 7 1365 377 272 51 112 chr11 102279767 102279808 -19564048 + B4 SINE B4 63 202 -90 7 1365 801 160 0 0 chr11 102279808 102279939 -19563917 + B1_Mur2 SINE Alu 14 144 -5 7 1365 994 40 0 0 chr11 102279947 102280073 -19563783 + B1_Mus1 SINE Alu 23 148 0 7 1365 200 111 28 0 chr11 102280073 102280109 -19563747 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 7 1365 433 307 122 52 chr11 102280245 102280516 -19563340 + RMER15-int LTR ERVL 1739 2028 -2971 7 1365 919 132 72 6 chr11 102280876 102281043 -19562813 + B2_Mm2 SINE B2 4 181 -14 7 1365 180 0 0 0 chr11 102281043 102281063 -19562793 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1365 865 252 47 17 chr11 102281107 102281265 -19562591 + RMER15-int LTR ERVL 4469 4634 -365 7 1365 224 30 30 0 chr11 102281265 102281298 -19562558 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1365 865 252 47 17 chr11 102281298 102281373 -19562483 + RMER15-int LTR ERVL 4635 4709 -290 7 1365 247 78 19 19 chr11 102281455 102281507 -19562349 + (TTTG)n Simple_repeat Simple_repeat 4 55 0 7 1365 1163 48 7 46 chr11 102281507 102281660 -19562196 - B1_Mm SINE Alu 0 147 1 7 1365 486 282 30 22 chr11 102281660 102281794 -19562062 - RSINE1 SINE B4 -29 136 2 7 1365 850 251 0 0 chr11 102281833 102282000 -19561856 + RMER15-int LTR ERVL 4807 4973 -26 7 1365 697 187 24 61 chr11 102282001 102282166 -19561690 + RMER15 LTR ERVL 2 160 -415 7 1365 776 296 90 11 chr11 102282164 102282441 -19561415 + RMER15 LTR ERVL 275 573 -2 7 1365 267 289 94 19 chr11 102283544 102283650 -19560206 + MT2B LTR ERVL 144 257 -344 7 1365 372 157 71 12 chr11 102283577 102283661 -19560195 + B1_Mus2 SINE Alu 25 113 -34 7 1365 1225 68 0 0 chr11 102283735 102283882 -19559974 - B1_Mus2 SINE Alu 0 147 1 7 1365 267 93 0 0 chr11 102284056 102284099 -19559757 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1365 456 288 7 50 chr11 102284156 102284271 -19559585 - RSINE1 SINE B4 -30 135 26 7 1365 2615 95 54 189 chr11 102284271 102284841 -19559015 - MT2_Mm LTR ERVL 0 493 1 7 1365 456 288 7 50 chr11 102284841 102284864 -19558992 - RSINE1 SINE B4 -140 25 3 7 1365 1578 11 0 0 chr11 102285024 102285204 -19558652 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1365 832 117 6 69 chr11 102285204 102285368 -19558488 - Lx LINE L1 -9 6645 6491 7 1365 350 225 12 12 chr11 102285473 102285554 -19558302 - MER45A DNA Tip100 0 178 98 7 1365 351 296 66 36 chr11 102285644 102285663 -19558193 + B4 SINE B4 64 86 -206 7 1365 579 252 0 22 chr11 102285663 102285797 -19558059 + B1_Mur1 SINE Alu 1 131 -18 7 1365 306 0 0 0 chr11 102285802 102285836 -19558020 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1365 236 260 75 12 chr11 102285916 102285999 -19557857 + MIR3 SINE MIR 110 193 -15 7 1365 240 356 98 0 chr11 102286310 102286442 -19557414 + MER53 DNA hAT 10 154 -39 7 1365 669 190 48 34 chr11 102286484 102286631 -19557225 + B1_Mur1 SINE Alu 1 149 0 7 1365 273 396 7 27 chr11 102287310 102287458 -19556398 + MLT2B4 LTR ERVL 71 215 -341 7 1365 1395 94 21 0 chr11 102287540 102287731 -19556125 + B2_Mm2 SINE B2 1 195 0 7 1365 620 187 154 0 chr11 102287962 102288085 -19555771 + B1_Mur2 SINE Alu 1 142 -7 7 1365 539 262 124 66 chr11 102288091 102288332 -19555524 + L1M4 LINE L1 5511 5765 -413 7 1365 342 290 111 65 chr11 102288579 102288778 -19555078 - RMER15 LTR ERVL 0 575 368 7 1365 431 253 252 31 chr11 102289060 102289205 -19554651 + B3A SINE B2 2 183 -15 7 1365 216 97 0 0 chr11 102289205 102289236 -19554620 + (CATA)n Simple_repeat Simple_repeat 1 31 0 7 1365 431 253 252 31 chr11 102289236 102289249 -19554607 + B3A SINE B2 184 195 -3 7 1365 408 272 83 53 chr11 102289307 102289439 -19554417 + ID_B1 SINE B4 81 216 -8 7 1365 412 248 168 0 chr11 102289463 102289588 -19554268 + B1F SINE Alu 2 147 -2 7 1365 198 71 0 0 chr11 102289589 102289617 -19554239 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 7 1365 1262 21 0 14 chr11 102289748 102289896 -19553960 + B1_Mm SINE Alu 2 147 0 7 1365 209 33 0 32 chr11 102289905 102289936 -19553920 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1365 799 174 7 7 chr11 102289944 102290089 -19553767 + B1_Mur4 SINE Alu 6 150 0 7 1365 330 264 37 130 chr11 102289948 102290109 -19553747 + B4A SINE B4 94 239 -53 7 1365 636 313 58 17 chr11 102290408 102290630 -19553226 + ID_B1 SINE B4 9 241 -51 7 1365 260 311 0 53 chr11 102290615 102290710 -19553146 - PB1 SINE Alu -23 104 15 7 1365 593 199 49 4 chr11 102292697 102292824 -19551032 - B1F SINE Alu -19 130 18 7 1365 273 266 48 117 chr11 102292715 102292860 -19550996 - MT2B2 LTR ERVL -306 278 144 7 1365 288 0 0 0 chr11 102292962 102292994 -19550862 + (TTA)n Simple_repeat Simple_repeat 2 33 0 7 1365 1220 68 0 0 chr11 102293012 102293160 -19550696 - B1_Mus1 SINE Alu 0 148 1 7 1365 180 179 0 25 chr11 102296542 102296582 -19547274 + MIRc SINE MIR 161 199 -69 7 1365 180 111 0 0 chr11 102298066 102298093 -19545763 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1365 228 321 34 62 chr11 102298170 102298186 -19545670 - RMER4A LTR ERVK -77 389 375 7 1365 567 43 0 0 chr11 102298186 102298256 -19545600 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1365 228 321 34 62 chr11 102298256 102298385 -19545471 - RMER4A LTR ERVK -92 374 248 7 1365 32 0 0 0 chr11 102299087 102299119 -19544737 + GC_rich Low_complexity Low_complexity 1 32 0 7 1365 24 53 0 0 chr11 102299523 102299561 -19544295 + GC_rich Low_complexity Low_complexity 1 38 0 7 1365 205 234 71 86 chr11 102301781 102301851 -19542005 + MIRm SINE MIR 88 156 -120 7 1365 472 283 21 67 chr11 102301852 102301973 -19541883 + B3 SINE B2 1 115 -101 7 1365 1128 29 73 0 chr11 102301973 102302110 -19541746 + B1_Mm SINE Alu 1 147 0 7 1365 472 283 21 67 chr11 102302110 102302181 -19541675 + B3 SINE B2 116 183 -33 7 1365 503 16 16 0 chr11 102302199 102302263 -19541593 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1365 306 148 0 0 chr11 102302352 102302406 -19541450 + (CCTG)n Simple_repeat Simple_repeat 2 55 0 7 1365 623 236 7 7 chr11 102302427 102302576 -19541280 - B1_Mur4 SINE Alu 0 150 2 7 1365 277 250 8 118 chr11 102302681 102302808 -19541048 + PB1D7 SINE Alu 1 113 -7 7 1365 866 188 93 39 chr11 102302854 102303059 -19540797 - B3 SINE B2 0 216 1 7 1365 450 0 0 0 chr11 102303100 102303150 -19540706 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1365 339 25 0 0 chr11 102303150 102303189 -19540667 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1365 345 344 108 0 chr11 102303242 102303399 -19540457 - MIR SINE MIR -4 258 85 8 1365 1187 48 14 0 chr11 102303795 102303940 -19539916 + B1_Mm SINE Alu 1 147 0 8 1365 194 0 0 37 chr11 102304303 102304330 -19539526 + (CCCCAG)n Simple_repeat Simple_repeat 1 26 0 8 1365 959 48 0 0 chr11 102304685 102304809 -19539047 - B1_Mus1 SINE Alu 0 148 25 8 1365 244 287 9 38 chr11 102304815 102304920 -19538936 - MIRb SINE MIR -115 153 52 8 1365 301 272 115 10 chr11 102305848 102305952 -19537904 - MIR SINE MIR -118 144 30 8 1365 225 0 0 0 chr11 102306115 102306140 -19537716 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1365 23 78 0 0 chr11 102308354 102308405 -19535451 + GC_rich Low_complexity Low_complexity 1 51 0 8 1365 401 304 62 0 chr11 102309403 102309515 -19534341 - PB1D7 SINE Alu 0 120 2 8 1365 308 196 0 0 chr11 102309640 102309696 -19534160 + B1F2 SINE Alu 52 107 -42 8 1365 286 330 22 0 chr11 102310133 102310224 -19533632 + CT-rich Low_complexity Low_complexity 4 96 0 8 1365 198 0 0 0 chr11 102310356 102310378 -19533478 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1365 379 344 156 30 chr11 102310378 102310750 -19533106 - L3 LINE CR1 -730 3759 3341 8 1365 373 196 13 33 chr11 102311281 102311349 -19532507 + polypyrimidine Low_complexity Low_complexity 81 150 0 8 1365 1162 92 44 98 chr11 102311349 102311553 -19532303 - B2_Mm2 SINE B2 -2 193 1 8 1365 373 196 13 33 chr11 102311553 102311637 -19532219 + CT-rich Low_complexity Low_complexity 1 80 0 8 1365 221 362 0 0 chr11 102311669 102311727 -19532129 - ID4_ SINE ID -8 75 18 8 1365 2066 147 54 34 chr11 102311834 102312222 -19531634 - MTB_Mm LTR MaLR -8 399 4 8 1365 436 288 93 28 chr11 102312246 102312302 -19531554 - ID_B1 SINE B4 -8 216 161 8 1365 3940 92 22 2 chr11 102312302 102312835 -19531021 - L1_Mus2 LINE L1 0 6566 6023 8 1365 436 288 93 28 chr11 102312835 102312960 -19530896 - ID_B1 SINE B4 -64 160 23 8 1365 470 16 32 0 chr11 102312973 102313035 -19530821 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 8 1365 1614 22 0 32 chr11 102313055 102313245 -19530611 + B2_Mm1a SINE B2 1 184 -9 8 1365 255 233 0 32 chr11 102313274 102313336 -19530520 - B1F SINE Alu -16 133 74 8 1365 511 215 25 9 chr11 102313337 102313462 -19530394 - B1F SINE Alu -19 130 5 8 1365 236 324 114 7 chr11 102313494 102313634 -19530222 + L2a LINE L2 3271 3425 -1 8 1365 1197 75 0 0 chr11 102314005 102314152 -19529704 + B1_Mus1 SINE Alu 1 147 -1 8 1365 189 94 0 0 chr11 102314153 102314185 -19529671 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1365 710 230 0 81 chr11 102314209 102314370 -19529486 + B1_Mur1 SINE Alu 1 148 -1 8 1365 373 300 14 161 chr11 102315015 102315064 -19528792 - RSINE1 SINE B4 -29 136 90 8 1365 1010 139 7 0 chr11 102315064 102315208 -19528648 + B1_Mus1 SINE Alu 3 147 -1 8 1365 373 300 14 161 chr11 102315208 102315301 -19528555 - RSINE1 SINE B4 -76 89 15 8 1365 333 0 0 0 chr11 102315312 102315349 -19528507 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 8 1365 245 184 0 0 chr11 102315349 102315398 -19528458 - ID_B1 SINE B4 -13 211 163 8 1365 1102 176 52 14 chr11 102315542 102315755 -19528101 + URR1B DNA MER1_type 5 225 0 8 1365 1176 211 98 146 chr11 102315807 102315892 -19527964 + MTD LTR MaLR 1 78 -341 8 1365 891 182 0 0 chr11 102315892 102316035 -19527821 + B1_Mus2 SINE Alu 4 146 -1 8 1365 1176 211 98 146 chr11 102316035 102316111 -19527745 + MTD LTR MaLR 79 115 -304 8 1365 990 179 47 65 chr11 102316111 102316326 -19527530 - B3 SINE B2 -5 211 1 8 1365 1176 211 98 146 chr11 102316326 102316601 -19527255 + MTD LTR MaLR 116 417 -2 8 1365 180 135 0 0 chr11 102317488 102317525 -19526331 + (CCCCG)n Simple_repeat Simple_repeat 2 38 0 8 1365 950 149 0 0 chr11 102317928 102318069 -19525787 - B1_Mus1 SINE Alu -7 141 1 8 1365 226 114 45 0 chr11 102318082 102318159 -19525697 + (CAGAGA)n Simple_repeat Simple_repeat 1 80 0 8 1365 231 219 137 0 chr11 102318956 102319029 -19524827 - ID SINE ID -141 83 1 8 1365 824 170 0 29 chr11 102319991 102320130 -19523726 + B1_Mur3 SINE Alu 1 135 -14 8 1365 198 0 0 0 chr11 102320130 102320152 -19523704 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1365 1154 52 0 0 chr11 102320152 102320288 -19523568 - B1_Mus2 SINE Alu -10 137 2 8 1365 1516 69 16 0 chr11 102320317 102320506 -19523350 + B2_Mm2 SINE B2 2 193 -2 8 1365 636 266 209 12 chr11 102320687 102320931 -19522925 - B4A SINE B4 0 292 1 8 1365 565 198 19 0 chr11 102323381 102323487 -19520369 + B1_Mur4 SINE Alu 11 118 -32 8 1365 288 0 0 0 chr11 102323487 102323519 -19520337 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1365 249 33 0 0 chr11 102323527 102323557 -19520299 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 8 1365 831 153 7 27 chr11 102323636 102323784 -19520072 - B1_Mur2 SINE Alu 0 149 5 8 1365 504 255 91 77 chr11 102323784 102323984 -19519872 - ID_B1 SINE B4 -11 213 8 8 1365 866 162 0 33 chr11 102324124 102324277 -19519579 + B1_Mur1 SINE Alu 2 149 0 8 1365 682 195 8 0 chr11 102324636 102324759 -19519097 + B1_Mur1 SINE Alu 24 147 -2 8 1365 636 301 0 21 chr11 102325316 102325506 -19518350 - ID_B1 SINE B4 0 224 39 8 1365 1242 27 0 14 chr11 102327951 102328099 -19515757 - B1_Mus2 SINE Alu -1 146 1 8 1365 403 231 28 37 chr11 102328113 102328221 -19515635 - PB1D10 SINE Alu 0 117 11 8 1365 343 174 129 11 chr11 102328233 102328326 -19515530 - B1F SINE Alu -2 147 44 8 1365 21 0 0 0 chr11 102328554 102328575 -19515281 + GC_rich Low_complexity Low_complexity 1 21 0 8 1365 196 287 100 33 chr11 102329662 102329752 -19514104 + MIRb SINE MIR 137 232 -36 8 1365 335 375 68 81 chr11 102329778 102329920 -19513936 - LTR16A LTR ERVL -43 408 276 8 1365 404 213 121 93 chr11 102329920 102330060 -19513796 - B1_Mur2 SINE Alu -1 148 5 8 1365 335 375 68 81 chr11 102330060 102330077 -19513779 - LTR16A LTR ERVL -176 275 262 8 1365 350 290 36 27 chr11 102330077 102330187 -19513669 - PB1D10 SINE Alu -6 111 1 8 1365 335 375 68 81 chr11 102330187 102330322 -19513534 - LTR16A LTR ERVL -190 261 117 8 1365 1448 75 5 16 chr11 102332145 102332336 -19511520 + B2_Mm1t SINE B2 2 190 -3 8 1365 268 261 127 8 chr11 102332455 102332543 -19511313 - ID4 SINE ID -52 100 7 8 1365 202 309 97 26 chr11 102332667 102332780 -19511076 + L2a LINE L2 3296 3416 -10 8 1365 1348 88 0 27 chr11 102332889 102333075 -19510781 - B2_Mm2 SINE B2 -14 181 1 8 1365 511 289 17 124 chr11 102333120 102333186 -19510670 - RSINE1 SINE B4 0 165 118 8 1365 1227 48 0 0 chr11 102333186 102333332 -19510524 - B1_Mus2 SINE Alu 0 147 2 8 1365 511 289 17 124 chr11 102333332 102333443 -19510413 - RSINE1 SINE B4 -48 117 7 8 1365 335 250 83 0 chr11 102333475 102333571 -19510285 - PB1D10 SINE Alu -5 112 9 8 1365 320 240 62 10 chr11 102333497 102333594 -19510262 - ID_B1 SINE B4 -57 167 66 8 1365 612 214 29 44 chr11 102333605 102333742 -19510114 - B1_Mur4 SINE Alu -2 148 14 8 1365 249 382 12 71 chr11 102333608 102333756 -19510100 - B4 SINE B4 -69 223 84 8 1365 371 204 229 103 chr11 102333756 102333931 -19509925 - B3A SINE B2 -1 197 1 8 1365 249 382 12 71 chr11 102333931 102333951 -19509905 - B4 SINE B4 -209 83 65 8 1365 560 203 17 17 chr11 102334432 102334552 -19509304 - PB1D9 SINE Alu 0 120 1 8 1365 1789 163 19 137 chr11 102334729 102335197 -19508659 + MTC LTR MaLR 1 413 -8 8 1365 1399 90 21 0 chr11 102335355 102335544 -19508312 + B2_Mm2 SINE B2 2 194 -1 8 1365 717 152 32 8 chr11 102335989 102336115 -19507741 + B2_Mm2 SINE B2 2 130 -65 8 1365 964 73 0 7 chr11 102336186 102336323 -19507533 - B1_Mus2 SINE Alu 0 147 12 8 1365 21 36 0 0 chr11 102338510 102338538 -19505318 + AT_rich Low_complexity Low_complexity 1 28 0 8 1365 285 98 0 0 chr11 102341487 102341528 -19502328 + (TCC)n Simple_repeat Simple_repeat 2 42 0 8 1365 24 0 0 0 chr11 102343716 102343740 -19500116 + AT_rich Low_complexity Low_complexity 1 24 0 8 1365 796 165 19 0 chr11 102343744 102343890 -19499966 + B2_Mm2 SINE B2 1 160 -38 8 1365 720 231 104 30 chr11 102343945 102344146 -19499710 - B3 SINE B2 0 216 1 8 1365 378 245 138 0 chr11 102344233 102344327 -19499529 - RSINE1 SINE B4 -58 107 1 8 1365 395 319 8 8 chr11 102344406 102344523 -19499333 + B1F SINE Alu 5 121 -28 8 1365 468 227 122 23 chr11 102344644 102344655 -19499201 - B1_Mur1 SINE Alu -1 148 140 8 1365 243 0 0 0 chr11 102344655 102344682 -19499174 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1365 468 227 122 23 chr11 102344682 102344801 -19499055 - B1_Mur1 SINE Alu -10 139 5 8 1365 1618 36 0 40 chr11 102344814 102345015 -19498841 - B2_Mm1t SINE B2 0 193 1 8 1365 648 0 0 0 chr11 102345036 102345108 -19498748 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 8 1365 189 107 0 0 chr11 102345115 102345143 -19498713 + (GGA)n Simple_repeat Simple_repeat 1 28 0 8 1365 838 95 0 0 chr11 102345306 102345432 -19498424 + B1_Mus1 SINE Alu 1 126 -22 8 1365 396 0 0 0 chr11 102345474 102345518 -19498338 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 1365 26 50 0 0 chr11 102345523 102345563 -19498293 + AT_rich Low_complexity Low_complexity 1 40 0 8 1365 225 65 0 0 chr11 102345713 102345744 -19498112 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 8 1365 1268 34 0 0 chr11 102345745 102345892 -19497964 - B1_Mm SINE Alu 0 147 1 8 1365 375 322 87 0 chr11 102345924 102346073 -19497783 - RSINE1 SINE B4 -2 163 2 8 1365 1167 132 26 11 chr11 102346100 102346291 -19497565 + B2_Mm2 SINE B2 2 195 0 8 1365 360 0 0 0 chr11 102346641 102346681 -19497175 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 8 1365 901 44 168 0 chr11 102346681 102346818 -19497038 - B2_Mm1a SINE B2 -32 161 2 8 1365 267 353 84 32 chr11 102347073 102347228 -19496628 + RSINE1 SINE B4 3 165 0 8 1365 512 180 0 0 chr11 102347270 102347359 -19496497 + B1_Mus2 SINE Alu 1 89 -58 8 1365 716 188 0 0 chr11 102347576 102347704 -19496152 - B1_Mur3 SINE Alu -20 129 2 8 1365 408 263 52 9 chr11 102347843 102347958 -19495898 - B1_Mus2 SINE Alu 0 120 1 9 1365 619 292 41 6 chr11 102348187 102348359 -19495497 - ID_B1 SINE B4 -3 221 44 9 1365 630 199 43 18 chr11 102348418 102348582 -19495274 - B2_Mm2 SINE B2 -27 168 1 9 1365 479 259 46 0 chr11 102348618 102348726 -19495130 - PB1D7 SINE Alu -5 115 3 9 1365 378 0 0 0 chr11 102350296 102350338 -19493518 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1365 251 250 139 49 chr11 102350630 102350654 -19493202 - ID_B1 SINE B4 -9 215 84 9 1365 299 206 108 17 chr11 102350654 102350751 -19493105 - PB1D10 SINE Alu -43 106 3 9 1365 405 210 0 57 chr11 102351097 102351203 -19492653 - PB1D9 SINE Alu -20 100 1 9 1365 2942 41 13 3 chr11 102351519 102351906 -19491950 - MTB LTR MaLR 0 400 10 9 1365 5190 103 28 80 chr11 102351883 102352873 -19490983 - MTB-int LTR MaLR -10 1088 150 9 1365 1084 29 0 0 chr11 102352877 102353015 -19490841 - B1_Mus2 SINE Alu 0 147 10 9 1365 876 70 14 34 chr11 102353025 102353172 -19490684 - MTB-int LTR MaLR -934 164 21 9 1365 1526 68 10 5 chr11 102353198 102353391 -19490465 - B2_Mm2 SINE B2 -1 194 1 9 1365 669 76 124 0 chr11 102353391 102353496 -19490360 - MTB LTR MaLR -5 402 285 9 1365 1166 62 7 0 chr11 102354010 102354156 -19489700 + B1_Mus1 SINE Alu 1 147 -1 9 1365 1142 96 78 0 chr11 102354167 102354334 -19489522 - B2_Mm2 SINE B2 -15 180 1 9 1365 399 73 0 0 chr11 102354349 102354404 -19489452 + (TATG)n Simple_repeat Simple_repeat 2 56 0 9 1365 242 187 227 0 chr11 102355188 102355263 -19488593 + B1_Mus1 SINE Alu 3 94 -54 9 1365 1619 42 5 0 chr11 102355331 102355522 -19488334 - B2_Mm1a SINE B2 -1 192 1 9 1365 1170 61 0 26 chr11 102356689 102356840 -19487016 - B1_Mus2 SINE Alu 0 147 1 9 1365 342 0 0 0 chr11 102357003 102357041 -19486815 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1365 241 235 64 83 chr11 102359310 102359409 -19484447 - RMER17C LTR ERVK -135 275 168 9 1365 396 0 0 0 chr11 102359409 102359453 -19484403 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1365 241 235 64 83 chr11 102359453 102359557 -19484299 - RMER17C LTR ERVK -243 167 76 9 1365 344 306 0 59 chr11 102359719 102359837 -19484019 - PB1D10 SINE Alu 0 117 7 9 1365 658 286 121 7 chr11 102360051 102360290 -19483566 - B4A SINE B4 -2 290 19 9 1365 415 281 43 22 chr11 102360336 102360474 -19483382 - B4A SINE B4 -5 287 147 9 1365 559 322 22 61 chr11 102360726 102360954 -19482902 - MER20 DNA MER1_type 0 219 1 9 1365 231 88 0 0 chr11 102361018 102361052 -19482804 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 9 1365 234 0 0 0 chr11 102361316 102361342 -19482514 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 9 1365 824 219 122 5 chr11 102361374 102361571 -19482285 + MTD LTR MaLR 171 390 -29 9 1365 818 271 16 5 chr11 102362698 102362891 -19480965 - B3 SINE B2 -21 195 1 9 1365 210 139 28 0 chr11 102363113 102363149 -19480707 + ID4_ SINE ID 5 41 -42 9 1365 678 110 0 18 chr11 102363542 102363653 -19480203 - B1_Mur4 SINE Alu -7 143 35 9 1365 243 274 0 16 chr11 102363742 102363805 -19480051 + tRNA-Ala-GCA tRNA tRNA 3 64 -11 9 1365 1448 45 45 0 chr11 102363903 102364082 -19479774 + B2_Mm2 SINE B2 2 188 -7 9 1365 27 0 0 0 chr11 102364110 102364137 -19479719 + AT_rich Low_complexity Low_complexity 1 27 0 9 1365 420 279 18 0 chr11 102364272 102364383 -19479473 - B3A SINE B2 -85 113 1 9 1365 373 253 99 40 chr11 102364390 102364542 -19479314 - B3A SINE B2 0 198 38 9 1365 471 295 1 0 chr11 102364764 102364901 -19478955 - B1F SINE Alu -9 141 3 9 1365 355 233 252 0 chr11 102364930 102365033 -19478823 + RSINE1 SINE B4 15 143 -22 9 1365 642 91 0 0 chr11 102365245 102365344 -19478512 + (CCTG)n Simple_repeat Simple_repeat 2 100 0 9 1365 1223 87 0 6 chr11 102365352 102365526 -19478330 - B2_Mm2 SINE B2 -22 173 1 9 1365 308 304 88 9 chr11 102365677 102365690 -19478166 + B4 SINE B4 71 92 -200 9 1365 567 173 99 63 chr11 102365690 102365832 -19478024 + B1_Mur3 SINE Alu 2 148 -1 9 1365 608 215 108 0 chr11 102365852 102365982 -19477874 + B1_Mus2 SINE Alu 1 144 -3 9 1365 284 0 28 0 chr11 102366011 102366047 -19477809 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 9 1365 887 218 51 0 chr11 102366130 102366327 -19477529 - B3 SINE B2 -4 212 6 9 1365 379 244 168 25 chr11 102366357 102366558 -19477298 - B4 SINE B4 -7 285 75 9 170 637 124 35 11 chr11 102367186 102367335 -19476521 - B2_Mm2 SINE B2 -22 171 9 9 1366 1385 75 21 0 chr11 102367352 102367538 -19476318 - B2_Mm1t SINE B2 -3 190 1 9 1366 536 253 179 17 chr11 102367649 102367822 -19476034 + B3 SINE B2 2 202 -14 9 1366 241 281 98 0 chr11 102367826 102367908 -19475948 + RSINE1 SINE B4 75 164 -1 9 1366 210 105 0 0 chr11 102367951 102367989 -19475867 + (G)n Simple_repeat Simple_repeat 1 38 0 9 1366 1098 82 0 20 chr11 102368010 102368149 -19475707 + B1_Mus2 SINE Alu 2 138 -9 9 1366 480 35 0 0 chr11 102368149 102368207 -19475649 + (TTAAA)n Simple_repeat Simple_repeat 3 60 0 9 1366 491 171 0 0 chr11 102369818 102369906 -19473950 - ID_B1 SINE B4 -5 219 132 9 1366 21 36 0 0 chr11 102370212 102370240 -19473616 + AT_rich Low_complexity Low_complexity 1 28 0 9 1366 200 216 0 0 chr11 102370454 102370491 -19473365 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 9 1366 21 0 0 0 chr11 102371312 102371333 -19472523 + AT_rich Low_complexity Low_complexity 1 21 0 9 1366 1089 36 7 41 chr11 102372061 102372207 -19471649 + B1_Mus2 SINE Alu 2 142 -5 9 1366 21 0 0 0 chr11 102372525 102372546 -19471310 + AT_rich Low_complexity Low_complexity 1 21 0 9 1366 738 175 7 28 chr11 102372757 102372898 -19470958 - B1_Mus1 SINE Alu -1 147 10 9 1366 638 178 287 24 chr11 102372916 102373083 -19470773 - B3 SINE B2 -5 211 1 9 1366 186 43 0 0 chr11 102373192 102373215 -19470641 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1366 1173 68 0 0 chr11 102373217 102373364 -19470492 - B1_Mus2 SINE Alu 0 147 1 9 1366 23 33 0 0 chr11 102373388 102373418 -19470438 + AT_rich Low_complexity Low_complexity 1 30 0 9 1366 297 253 161 0 chr11 102373468 102373555 -19470301 + RSINE1 SINE B4 4 104 -61 9 1366 336 175 0 0 chr11 102373757 102373820 -19470036 + (TATG)n Simple_repeat Simple_repeat 4 66 0 9 1366 625 256 194 36 chr11 102373830 102374077 -19469779 - B4A SINE B4 -4 288 3 9 1366 349 267 19 88 chr11 102374114 102374274 -19469582 + B1F1 SINE Alu 1 149 0 9 1366 666 289 77 14 chr11 102374969 102375176 -19468680 - B4 SINE B4 -7 285 66 9 1366 394 289 16 16 chr11 102375173 102375296 -19468560 + MTE-int LTR MaLR 1432 1554 -26 9 1366 406 340 27 20 chr11 102375298 102375448 -19468408 + RSINE1 SINE B4 5 155 -10 9 1366 392 195 58 0 chr11 102375465 102375552 -19468304 + PB1D9 SINE Alu 14 105 -15 9 1366 243 152 0 0 chr11 102375567 102375613 -19468243 + A-rich Low_complexity Low_complexity 1 46 0 9 1366 416 221 80 37 chr11 102375619 102375734 -19468122 + B1_Mur4 SINE Alu 33 147 -3 9 1366 229 296 86 0 chr11 102375973 102376054 -19467802 - PB1D10 SINE Alu -1 116 29 9 1366 373 316 115 5 chr11 102376147 102376338 -19467518 + ID_B1 SINE B4 6 217 -7 9 1366 556 276 24 0 chr11 102376379 102376506 -19467350 + RSINE1 SINE B4 5 134 -31 9 1366 1999 131 19 6 chr11 102376542 102376865 -19466991 + Lx4A LINE L1 6732 7058 0 9 1366 1151 68 14 0 chr11 102376872 102377018 -19466838 + B1_Mus1 SINE Alu 1 148 0 9 1366 321 244 80 23 chr11 102377294 102377382 -19466474 - PB1D10 SINE Alu -24 93 1 9 1366 580 255 185 19 chr11 102377424 102377732 -19466124 + RLTR15 LTR ERVK 1 359 0 9 1366 622 283 0 50 chr11 102377772 102377932 -19465924 - RSINE1 SINE B4 -12 153 2 9 1366 372 204 39 0 chr11 102378177 102378280 -19465576 + PB1D7 SINE Alu 14 120 0 9 1366 447 286 119 0 chr11 102378330 102378456 -19465400 + RSINE1 SINE B4 3 143 -22 9 1366 914 164 14 0 chr11 102378610 102378756 -19465100 + B1_Mur3 SINE Alu 2 149 0 9 1366 212 349 0 0 chr11 102378869 102378935 -19464921 + ID4_ SINE ID 15 80 -3 9 1366 565 241 36 14 chr11 102379387 102379526 -19464330 + B1_Mur2 SINE Alu 2 143 -6 9 1366 253 296 184 0 chr11 102379573 102379671 -19464185 + PB1D10 SINE Alu 2 117 0 9 1366 751 237 188 22 chr11 102379744 102379973 -19463883 - B4 SINE B4 -25 267 1 9 1366 570 241 78 50 chr11 102380124 102380303 -19463553 - B3A SINE B2 0 198 15 9 1366 229 173 0 37 chr11 102380363 102380417 -19463439 + B1_Mus2 SINE Alu 95 146 -1 9 1366 594 227 31 0 chr11 102380541 102380669 -19463187 - B1_Mur2 SINE Alu -17 132 1 9 1366 845 209 112 0 chr11 102380686 102380873 -19462983 - B3 SINE B2 -8 208 1 9 1366 586 289 43 6 chr11 102380911 102381107 -19462749 + B3A SINE B2 1 205 -11 9 1366 862 198 64 0 chr11 102381127 102381314 -19462542 - B3 SINE B2 -6 210 12 9 1366 26 0 0 0 chr11 102381330 102381356 -19462500 + AT_rich Low_complexity Low_complexity 1 26 0 9 1366 292 230 126 0 chr11 102381542 102381629 -19462227 + B3A SINE B2 3 100 -98 9 1366 28 0 0 0 chr11 102381647 102381675 -19462181 + AT_rich Low_complexity Low_complexity 1 28 0 9 1366 35 71 0 0 chr11 102381687 102381757 -19462099 + AT_rich Low_complexity Low_complexity 1 70 0 9 1366 1235 28 0 7 chr11 102381786 102381931 -19461925 + B1_Mm SINE Alu 1 144 -3 9 1366 207 0 0 0 chr11 102381931 102381954 -19461902 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1366 55 56 0 0 chr11 102381982 102382072 -19461784 + AT_rich Low_complexity Low_complexity 1 90 0 1 1366 354 260 9 28 chr11 102382505 102382612 -19461244 + PB1D7 SINE Alu 13 117 -3 1 1366 449 282 26 0 chr11 102382616 102382733 -19461123 + ID_B1 SINE B4 95 214 -10 1 1366 372 181 108 0 chr11 102382961 102383044 -19460812 + B1_Mur4 SINE Alu 53 144 -6 1 1366 2343 44 66 0 chr11 102383081 102383398 -19460458 + ORR1A1 LTR MaLR 1 338 -8 1 1366 374 229 57 9 chr11 102383448 102383554 -19460302 + ID_B1 SINE B4 108 218 -6 1 1366 619 219 0 0 chr11 102383601 102383720 -19460136 + B1_Mur4 SINE Alu 22 140 -10 1 1366 196 200 0 32 chr11 102383775 102383837 -19460019 + GA-rich Low_complexity Low_complexity 2 61 0 1 1366 522 307 11 78 chr11 102383837 102384017 -19459839 + B4A SINE B4 7 174 -118 1 1366 216 314 0 0 chr11 102384037 102384088 -19459768 + G-rich Low_complexity Low_complexity 3 53 0 1 1366 262 221 191 0 chr11 102384262 102384330 -19459526 + RSINE1 SINE B4 47 127 -38 1 1366 236 266 31 31 chr11 102384397 102384494 -19459362 + PB1D7 SINE Alu 21 117 -3 1 1366 222 37 0 0 chr11 102384501 102384528 -19459328 + (CACGA)n Simple_repeat Simple_repeat 5 31 0 1 1366 1216 48 0 0 chr11 102384568 102384714 -19459142 + B1_Mus2 SINE Alu 2 147 0 1 1366 207 0 0 0 chr11 102384714 102384737 -19459119 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1366 1190 98 63 0 chr11 102384769 102384943 -19458913 + B2_Mm2 SINE B2 2 186 -9 1 1366 490 70 0 27 chr11 102384996 102385070 -19458786 + ORR1A3 LTR MaLR 247 318 -8 1 1366 1198 97 19 131 chr11 102385373 102385545 -19458311 - B2_Mm1a SINE B2 -2 191 36 1 1366 1215 34 0 20 chr11 102385545 102385695 -19458161 - B1_Mm SINE Alu 0 147 1 1 1366 1198 97 19 131 chr11 102385695 102385736 -19458120 - B2_Mm1a SINE B2 -158 35 2 1 1366 1162 28 13 27 chr11 102386105 102386254 -19457602 + B1_Mus1 SINE Alu 2 148 0 1 1366 234 245 0 19 chr11 102386393 102386447 -19457409 + B1F SINE Alu 96 148 -1 1 1366 1097 76 101 0 chr11 102386450 102386608 -19457248 + B2_Mm1t SINE B2 2 175 -18 1 1366 241 188 0 20 chr11 102386635 102386684 -19457172 + ID_B1 SINE B4 162 209 -15 1 1366 401 262 38 76 chr11 102386743 102386875 -19456981 + B1F2 SINE Alu 23 149 0 1 1366 778 158 24 0 chr11 102386921 102387048 -19456808 - B1_Mur4 SINE Alu -16 134 5 1 1366 311 202 98 33 chr11 102387360 102387452 -19456404 + B1_Mus1 SINE Alu 5 102 -46 1 1366 204 125 0 0 chr11 102387470 102387502 -19456354 + (CATG)n Simple_repeat Simple_repeat 3 34 0 1 1366 1146 48 0 33 chr11 102387545 102387696 -19456160 + B1_Mus2 SINE Alu 2 147 0 1 1366 531 198 0 38 chr11 102387808 102387913 -19455943 - B1_Mur1 SINE Alu -27 122 22 1 1366 802 163 14 14 chr11 102388109 102388252 -19455604 - B1_Mus1 SINE Alu 0 148 6 1 1366 311 233 200 0 chr11 102388275 102388365 -19455491 - PB1D9 SINE Alu -1 119 12 1 1366 518 146 10 0 chr11 102390667 102390763 -19453093 + CT-rich Low_complexity Low_complexity 2 98 0 1 1366 808 190 0 7 chr11 102390765 102390908 -19452948 - B1_Mur3 SINE Alu -6 143 2 1 1366 985 254 9 5 chr11 102391011 102391221 -19452635 - ID_B1 SINE B4 -13 211 1 1 1366 395 275 47 55 chr11 102391702 102391829 -19452027 + ID_B1 SINE B4 99 224 0 1 1366 1206 41 0 33 chr11 102391914 102392066 -19451790 + B1_Mus1 SINE Alu 1 147 -1 1 1366 291 286 8 56 chr11 102392181 102392307 -19451549 + PB1D9 SINE Alu 1 120 0 1 1366 504 227 141 28 chr11 102393333 102393510 -19450346 - B3A SINE B2 0 198 2 1 1366 706 95 17 8 chr11 102393526 102393643 -19450213 + (GAGAA)n Simple_repeat Simple_repeat 4 121 0 1 1366 38 61 0 0 chr11 102393973 102394039 -19449817 + AT_rich Low_complexity Low_complexity 1 66 0 1 1366 237 242 277 32 chr11 102394044 102394138 -19449718 + B1F2 SINE Alu 2 118 -31 1 1366 412 198 154 57 chr11 102394156 102394279 -19449577 + B1_Mur2 SINE Alu 1 135 -14 1 1366 1033 73 0 19 chr11 102394279 102394433 -19449423 + (GGAAA)n Simple_repeat Simple_repeat 1 151 0 1 1366 434 270 33 0 chr11 102394598 102394711 -19449145 + PB1D7 SINE Alu 1 116 -33 1 1366 891 91 252 7 chr11 102394901 102395056 -19448800 + B2_Mm2 SINE B2 1 193 -2 1 1366 859 109 0 28 chr11 102398882 102399024 -19444832 - B1_Mus1 SINE Alu 0 148 11 1 1366 381 267 40 94 chr11 102398897 102399046 -19444810 - B4 SINE B4 -78 214 74 1 1366 22 0 0 0 chr11 102399745 102399767 -19444089 + AT_rich Low_complexity Low_complexity 1 22 0 1 1366 1168 41 7 7 chr11 102399786 102399933 -19443923 + B1_Mus1 SINE Alu 2 148 0 1 1366 445 295 0 15 chr11 102399943 102400074 -19443782 + RSINE1 SINE B4 3 131 -34 1 1366 222 285 61 116 chr11 102400212 102400359 -19443497 + B4 SINE B4 12 150 -142 1 1366 391 228 130 0 chr11 102400306 102400398 -19443458 + B1_Mm SINE Alu 13 116 -31 1 1366 1068 194 38 19 chr11 102400565 102400775 -19443081 + B3 SINE B2 2 215 -1 1 1366 282 304 0 0 chr11 102400799 102400878 -19442978 + ID4_ SINE ID 1 79 -4 1 1366 1196 62 0 0 chr11 102400896 102401042 -19442814 + B1_Mus2 SINE Alu 2 147 0 1 1366 207 0 0 0 chr11 102401042 102401065 -19442791 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1366 413 156 64 13 chr11 102401200 102401278 -19442578 - B3 SINE B2 -133 83 2 1 1366 306 275 0 24 chr11 102401432 102401514 -19442342 - ID4_ SINE ID -2 81 2 1 1366 981 161 34 113 chr11 102401556 102401794 -19442062 + URR1B DNA MER1_type 7 225 0 1 1366 287 281 98 93 chr11 102401794 102401820 -19442036 - CYRA11_Mm Unknown Y-chromosome -450 167 141 1 1366 3237 43 13 0 chr11 102401821 102402212 -19441644 + MTA_Mm LTR MaLR 1 396 0 1 1366 1590 26 10 21 chr11 102402377 102402571 -19441285 + B2_Mm1t SINE B2 2 193 0 1 1366 417 175 37 55 chr11 102402648 102402757 -19441099 - B1_Mur1 SINE Alu 0 149 43 1 1366 308 318 68 23 chr11 102402904 102403036 -19440820 - RSINE1 SINE B4 -25 140 3 1 1366 479 312 0 14 chr11 102403243 102403389 -19440467 - ID_B1 SINE B4 -2 222 79 1 1366 668 231 44 13 chr11 102403521 102403679 -19440177 - RSINE1 SINE B4 0 165 3 1 1366 556 327 22 31 chr11 102403713 102403937 -19439919 + ID_B1 SINE B4 2 223 -1 1 1366 287 311 39 10 chr11 102404012 102404116 -19439740 + RSINE1 SINE B4 59 165 0 1 1366 558 221 18 0 chr11 102404139 102404252 -19439604 - PB1D9 SINE Alu -5 115 1 1 1366 695 232 7 0 chr11 102404614 102404752 -19439104 + B1_Mus2 SINE Alu 9 147 0 1 1366 672 257 0 13 chr11 102404791 102404941 -19438915 + B1_Mur2 SINE Alu 1 148 -1 1 1366 844 118 0 0 chr11 102405002 102405129 -19438727 - B1_Mus2 SINE Alu -9 138 12 1 1366 381 246 98 91 chr11 102405129 102405145 -19438711 - B4 SINE B4 -75 217 74 1 1366 524 83 200 61 chr11 102405457 102405572 -19438284 + B1_Mus2 SINE Alu 17 147 0 1 1366 203 0 0 36 chr11 102405573 102405601 -19438255 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1366 308 212 87 39 chr11 102405740 102405843 -19438013 + PB1D9 SINE Alu 13 120 0 1 1366 278 266 59 69 chr11 102405898 102405999 -19437857 + PB1D10 SINE Alu 18 117 0 1 1366 264 338 0 0 chr11 102406045 102406119 -19437737 - ID4_ SINE ID -8 75 2 1 1366 289 311 0 11 chr11 102406147 102406238 -19437618 - ID_B1 SINE B4 -1 223 134 1 1366 471 136 324 9 chr11 102406246 102406357 -19437499 - B1_Mus2 SINE Alu -1 146 1 1 1366 271 350 158 41 chr11 102406543 102406689 -19437167 + RSINE1 SINE B4 3 165 0 1 1366 217 311 82 0 chr11 102406712 102406773 -19437083 + BC1_Mm scRNA scRNA 8 73 -79 1 1366 391 309 39 8 chr11 102406723 102406850 -19437006 + ID_B1 SINE B4 25 155 -69 1 1366 279 0 0 0 chr11 102406936 102406967 -19436889 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1366 399 41 0 0 chr11 102406967 102407016 -19436840 + (GGA)n Simple_repeat Simple_repeat 2 50 0 1 1366 1254 28 0 0 chr11 102407573 102407715 -19436141 + B1_Mus1 SINE Alu 1 142 -6 1 1366 196 0 118 0 chr11 102407722 102407756 -19436100 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 1366 339 296 20 0 chr11 102407871 102407969 -19435887 + B1F SINE Alu 50 149 0 1 1366 444 147 165 0 chr11 102407981 102408090 -19435766 + B1_Mur1 SINE Alu 23 149 0 1 1366 218 289 0 0 chr11 102408119 102408164 -19435692 + B4A SINE B4 78 122 -170 1 1366 380 250 0 111 chr11 102408132 102408258 -19435598 + PB1D10 SINE Alu 6 117 0 1 1366 1375 81 16 0 chr11 102408753 102408939 -19434917 + B2_Mm1a SINE B2 3 191 -2 1 1366 952 113 35 0 chr11 102408944 102409085 -19434771 + B1_Mus1 SINE Alu 3 148 0 1 1366 968 68 75 0 chr11 102409170 102409303 -19434553 - B1_Mus2 SINE Alu 0 147 5 1 1366 1681 201 91 95 chr11 102409625 102410143 -19433713 + RLTR20C LTR ERVK 3 518 -16 1 1366 834 50 30 0 chr11 102410512 102410613 -19433243 - U6 snRNA snRNA -3 104 1 1 1366 1192 21 0 14 chr11 102410727 102410870 -19432986 + B1_Mm SINE Alu 2 142 -5 1 1366 183 80 0 0 chr11 102410875 102410900 -19432956 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1366 267 290 41 99 chr11 102411317 102411442 -19432414 + RSINE1 SINE B4 3 126 -39 1 1366 441 0 0 0 chr11 102411442 102411491 -19432365 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1366 267 290 41 99 chr11 102411491 102411537 -19432319 + RSINE1 SINE B4 127 164 -1 1 1366 23 0 0 0 chr11 102411637 102411660 -19432196 + AT_rich Low_complexity Low_complexity 1 23 0 1 1366 419 231 0 28 chr11 102411671 102411778 -19432078 + PB1D9 SINE Alu 13 116 -4 1 1366 288 0 0 0 chr11 102411914 102411946 -19431910 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1 1366 449 217 55 48 chr11 102412443 102412588 -19431268 + B1F SINE Alu 3 148 -1 1 1366 341 254 74 58 chr11 102412602 102412723 -19431133 + ID_B1 SINE B4 84 206 -18 1 1366 649 241 144 20 chr11 102412992 102413187 -19430669 + ID_B1 SINE B4 3 221 -3 1 1366 539 273 0 57 chr11 102413264 102413423 -19430433 + RSINE1 SINE B4 7 156 -9 1 1366 247 272 219 68 chr11 102413472 102413618 -19430238 + B3A SINE B2 1 168 -30 1 1366 626 138 169 8 chr11 102413699 102413823 -19430033 + B1_Mur4 SINE Alu 5 148 -2 1 1366 32 0 0 0 chr11 102413824 102413856 -19430000 + AT_rich Low_complexity Low_complexity 1 32 0 1 1366 601 221 24 24 chr11 102414068 102414193 -19429663 - RSINE1 SINE B4 -29 136 12 1 1366 490 282 24 8 chr11 102414207 102414332 -19429524 - ID_B1 SINE B4 -7 217 91 1 1366 198 0 0 0 chr11 102414346 102414368 -19429488 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1366 1359 70 43 5 chr11 102414378 102414564 -19429292 + B2_Mm2 SINE B2 3 195 0 1 1366 201 176 0 0 chr11 102414773 102414807 -19429049 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 1366 228 288 100 57 chr11 102414807 102414877 -19428979 - ID4 SINE ID -9 74 2 1 1366 219 180 20 0 chr11 102414969 102415019 -19428837 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1366 445 244 198 23 chr11 102415042 102415214 -19428642 + ID_B1 SINE B4 2 203 -21 1 1366 426 248 59 17 chr11 102415572 102415691 -19428165 - RSINE1 SINE B4 -40 125 2 1 1366 21 57 0 0 chr11 102415936 102415971 -19427885 + AT_rich Low_complexity Low_complexity 1 35 0 1 1366 187 29 86 0 chr11 102416555 102416590 -19427266 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1366 22 0 0 0 chr11 102417054 102417076 -19426780 + GC_rich Low_complexity Low_complexity 1 22 0 1 1366 287 204 161 0 chr11 102418195 102418215 -19425641 + B1F SINE Alu 42 149 0 1 1366 358 206 27 0 chr11 102418215 102418288 -19425568 + ID_B1 SINE B4 149 223 -1 1 1366 201 133 0 0 chr11 102418447 102418477 -19425379 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 1 1366 532 223 41 16 chr11 102418502 102418625 -19425231 - B3A SINE B2 -71 127 2 1 1366 405 54 0 0 chr11 102418707 102418763 -19425093 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 1366 220 62 0 0 chr11 102418769 102418801 -19425055 - B3 SINE B2 -184 32 1 1 1366 274 237 184 0 chr11 102418801 102418874 -19424982 - B4A SINE B4 -62 230 144 1 1366 183 80 0 0 chr11 102419052 102419077 -19424779 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1366 1246 44 0 0 chr11 102419077 102419236 -19424620 - B2_Mm1a SINE B2 -33 160 2 1 1366 2033 152 60 11 chr11 102419316 102419682 -19424174 - ORR1C2 LTR MaLR 0 384 1 1 1366 441 238 0 68 chr11 102419884 102420008 -19423848 + B3A SINE B2 1 94 -122 1 1366 1142 59 0 0 chr11 102420008 102420144 -19423712 - B1_Mm SINE Alu -11 136 1 1 1366 434 284 0 191 chr11 102420144 102420202 -19423654 + B3 SINE B2 95 148 -68 1 1366 972 171 114 8 chr11 102420241 102420477 -19423379 - RMER15 LTR ERVL -3 572 312 1 1366 523 259 70 42 chr11 102420491 102420705 -19423151 - RMER15 LTR ERVL -350 225 6 1 1366 542 258 70 0 chr11 102420856 102420984 -19422872 - ID_B1 SINE B4 -3 221 85 1 1366 788 215 81 6 chr11 102421016 102421189 -19422667 - B3 SINE B2 -3 213 28 1 1366 216 0 0 0 chr11 102421206 102421230 -19422626 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1366 1196 49 0 0 chr11 102421230 102421373 -19422483 - B1_Mus2 SINE Alu 0 147 5 1 1366 601 224 202 0 chr11 102421384 102421567 -19422289 - ID_B1 SINE B4 -4 220 1 1 1366 219 231 179 0 chr11 102421675 102421753 -19422103 - PB1D10 SINE Alu -21 96 5 1 1366 424 202 10 29 chr11 102421789 102421891 -19421965 + B1F SINE Alu 38 137 -12 1 1366 180 0 0 0 chr11 102422029 102422049 -19421807 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1366 488 219 132 8 chr11 102422049 102422178 -19421678 - B1F SINE Alu 0 149 5 1 1366 655 207 43 22 chr11 102422205 102422343 -19421513 - B1_Mur2 SINE Alu 0 149 9 1 1366 882 162 13 20 chr11 102422345 102422496 -19421360 + B1_Mur4 SINE Alu 1 150 0 1 1366 277 157 59 0 chr11 102422513 102422564 -19421292 - L1MC4 LINE L1 -1018 7024 6971 1 1366 390 179 0 138 chr11 102422640 102422763 -19421093 - ID_B1 SINE B4 0 224 119 1 1366 881 217 34 15 chr11 102422845 102423051 -19420805 - B3 SINE B2 -5 211 2 1 1366 959 151 0 51 chr11 102423100 102423274 -19420582 + ORR1A2 LTR MaLR 1 165 -162 1 1366 773 91 17 0 chr11 102423274 102423402 -19420454 + B1_Mm SINE Alu 4 150 0 1 1366 900 85 16 0 chr11 102423402 102423531 -19420325 + ORR1A2 LTR MaLR 155 285 -41 1 1366 1193 35 14 0 chr11 102423532 102423676 -19420180 + B1_Mm SINE Alu 2 147 0 1 1366 824 145 222 12 chr11 102423755 102423922 -19419934 + B3 SINE B2 1 202 -14 1 1366 1424 179 122 80 chr11 102424105 102424505 -19419351 - MTD LTR MaLR -2 417 1 1 1366 753 246 80 31 chr11 102424525 102424852 -19419004 + RLTR15 LTR ERVK 1 343 -16 1 1366 228 86 0 0 chr11 102425192 102425227 -19418629 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1366 758 220 0 0 chr11 102425341 102425482 -19418374 + B1_Mur3 SINE Alu 1 141 -8 1 1366 722 164 95 22 chr11 102425749 102425886 -19417970 - B1_Mus1 SINE Alu 0 148 2 1 1366 507 33 0 0 chr11 102425900 102425961 -19417895 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1 1366 609 192 8 39 chr11 102425963 102426093 -19417763 - RMER1C Other Other -20 1322 1197 1 1366 608 233 37 8 chr11 102426111 102426245 -19417611 + B1_Mur1 SINE Alu 3 140 -9 1 1366 511 274 7 72 chr11 102426252 102426432 -19417424 + B3A SINE B2 2 165 -28 1 1366 387 105 0 0 chr11 102426455 102426512 -19417344 + (CCA)n Simple_repeat Simple_repeat 3 59 0 1 1366 2811 60 34 46 chr11 102426553 102426969 -19416887 + RLTR10A LTR ERVK 1 411 0 1 1366 471 100 0 0 chr11 102427019 102427089 -19416767 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1366 525 157 165 9 chr11 102427382 102427491 -19416365 - B1_Mur2 SINE Alu -2 147 22 1 1366 1191 62 0 0 chr11 102427500 102427646 -19416210 + B1_Mus1 SINE Alu 2 147 -1 1 1366 180 0 54 54 chr11 102427647 102427684 -19416172 + (TAAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1366 345 294 27 18 chr11 102427805 102427916 -19415940 + B3A SINE B2 2 113 -85 1 1366 910 70 236 0 chr11 102427932 102428089 -19415767 - B2_Mm2 SINE B2 0 195 2 1 1366 207 69 0 0 chr11 102428115 102428144 -19415712 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1366 1178 62 0 0 chr11 102428153 102428299 -19415557 - B1_Mm SINE Alu 0 147 2 1 1366 684 186 7 58 chr11 102428299 102428436 -19415420 - B1_Mur3 SINE Alu -18 131 2 1 1366 275 65 22 0 chr11 102428451 102428497 -19415359 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1366 21 36 0 0 chr11 102428504 102428532 -19415324 + AT_rich Low_complexity Low_complexity 1 28 0 1 1366 911 90 42 0 chr11 102428601 102428745 -19415111 - B2_Mm1t SINE B2 -14 179 30 1 1366 248 256 71 24 chr11 102428769 102428853 -19415003 - B1_Mur2 SINE Alu 0 149 62 1 1366 1093 37 66 0 chr11 102428967 102429103 -19414753 - B1_Mm SINE Alu 0 147 3 1 1366 377 106 90 45 chr11 102429271 102429360 -19414496 + PB1 SINE Alu 2 94 -33 1 1366 28 29 0 0 chr11 102429413 102429448 -19414408 + AT_rich Low_complexity Low_complexity 1 35 0 1 1366 207 0 0 0 chr11 102429905 102429928 -19413928 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1366 459 259 61 0 chr11 102429938 102430069 -19413787 + B1_Mur1 SINE Alu 5 143 -6 1 1366 213 121 0 0 chr11 102430075 102430108 -19413748 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1366 1316 223 32 102 chr11 102430113 102430523 -19413333 + RLTR18B LTR ERVK 1 381 -131 1 1366 1031 30 0 7 chr11 102430525 102430660 -19413196 + B2_Mm2 SINE B2 2 135 -60 1 1366 276 143 49 39 chr11 102430663 102430765 -19413091 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 1 1366 312 27 0 0 chr11 102430767 102430804 -19413052 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1366 436 305 23 8 chr11 102430808 102430937 -19412919 + RLTR18B LTR ERVK 381 511 -1 1 1366 680 226 35 45 chr11 102430947 102431146 -19412710 + B3A SINE B2 1 197 -1 1 1366 495 256 31 0 chr11 102431166 102431295 -19412561 + ID_B1 SINE B4 3 135 -89 1 1366 233 94 264 0 chr11 102431259 102431312 -19412544 + PB1D7 SINE Alu 18 84 -36 1 1366 518 188 19 19 chr11 102431619 102431722 -19412134 - B1_Mur3 SINE Alu -1 148 46 1 1366 817 121 241 6 chr11 102431899 102432057 -19411799 + B2_Mm2 SINE B2 1 195 0 1 1366 508 89 0 12 chr11 102432089 102432169 -19411687 + B1_Mur4 SINE Alu 72 150 0 1 1366 985 223 237 66 chr11 102432280 102432736 -19411120 - RLTR20C LTR ERVK 0 534 1 1 1366 276 338 12 99 chr11 102432774 102432935 -19410921 - RSINE1 SINE B4 0 165 19 1 1366 239 327 89 18 chr11 102432986 102433098 -19410758 - RSINE1 SINE B4 -1 164 45 1 1366 486 49 0 0 chr11 102433098 102433159 -19410697 + (TCC)n Simple_repeat Simple_repeat 3 63 0 1 1366 1196 74 0 0 chr11 102433162 102433310 -19410546 - B1_Mus1 SINE Alu 0 148 1 1 1366 1313 108 5 25 chr11 102433312 102433511 -19410345 - B2_Mm2 SINE B2 0 195 1 1 1366 286 235 47 13 chr11 102433536 102433632 -19410224 + MIR SINE MIR 66 167 -101 1 1366 660 152 24 3 chr11 102433797 102433971 -19409885 - B2_Mm2 SINE B2 -10 183 1 1 1366 270 0 0 0 chr11 102433971 102434001 -19409855 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1366 258 223 0 20 chr11 102434014 102434087 -19409769 - ID_B1 SINE B4 -139 153 83 1 1366 612 78 0 10 chr11 102434101 102434205 -19409651 - L1_Mus3 LINE L1 0 6638 6536 1 1366 441 129 29 10 chr11 102434514 102434616 -19409240 + T-rich Low_complexity Low_complexity 2 105 0 1 1366 251 295 189 26 chr11 102434876 102435029 -19408827 - MIRb SINE MIR -3 265 88 1 1366 599 245 115 6 chr11 102435079 102435235 -19408621 + B3 SINE B2 1 173 -43 1 1366 22 0 0 0 chr11 102435238 102435260 -19408596 + AT_rich Low_complexity Low_complexity 1 22 0 1 1366 1075 113 0 7 chr11 102435400 102435551 -19408305 - B1_Mur4 SINE Alu 0 150 1 1 1366 883 119 0 7 chr11 102435573 102435708 -19408148 - B2_Mm2 SINE B2 -60 135 2 1 1366 25 0 0 0 chr11 102435713 102435738 -19408118 + AT_rich Low_complexity Low_complexity 1 25 0 1 1366 609 279 0 7 chr11 102435751 102435899 -19407957 - RSINE1 SINE B4 -16 149 3 1 1366 614 253 45 7 chr11 102435926 102436081 -19407775 - B3 SINE B2 -7 209 49 1 1366 39 22 0 0 chr11 102436115 102436161 -19407695 + AT_rich Low_complexity Low_complexity 1 46 0 1 1366 711 230 35 59 chr11 102436173 102436217 -19407639 - B3A SINE B2 0 198 160 1 1366 180 0 0 0 chr11 102436217 102436237 -19407619 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1366 711 230 35 59 chr11 102436237 102436395 -19407461 - B3A SINE B2 -39 159 1 1 1366 348 313 0 0 chr11 102436505 102436588 -19407268 - RSINE1 SINE B4 0 165 83 1 1366 2692 138 11 107 chr11 102436612 102437055 -19406801 + RLTR11A LTR ERVK 12 450 -78 1 1366 1190 55 0 0 chr11 102437055 102437201 -19406655 + B1_Mm SINE Alu 2 147 0 1 1366 2692 138 11 107 chr11 102437201 102437327 -19406529 + RLTR11A LTR ERVK 451 526 -2 1 1366 685 170 48 28 chr11 102437429 102437574 -19406282 - B1_Mur2 SINE Alu 0 149 2 1 1366 403 245 83 98 chr11 102437633 102437887 -19405969 + MER33 DNA MER1_type 74 323 -1 1 1366 379 314 16 8 chr11 102437941 102438063 -19405793 - MER2B DNA MER2_type -4 332 210 1 1366 27 0 0 0 chr11 102438173 102438200 -19405656 + AT_rich Low_complexity Low_complexity 1 27 0 1 1366 228 290 53 21 chr11 102439031 102439126 -19404730 + C-rich Low_complexity Low_complexity 3 100 0 1 1366 297 0 0 0 chr11 102439361 102439394 -19404462 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1 1366 422 296 30 74 chr11 102439395 102439530 -19404326 - RSINE1 SINE B4 0 165 37 1 1366 346 273 20 10 chr11 102439677 102439777 -19404079 + PB1D7 SINE Alu 13 113 -7 1 1366 203 0 0 36 chr11 102439989 102440017 -19403839 + (TCCCG)n Simple_repeat Simple_repeat 3 29 0 1 1366 378 257 10 10 chr11 102441525 102441627 -19402229 + PB1 SINE Alu 26 127 0 1 1366 1367 85 21 0 chr11 102441631 102441819 -19402037 + B2_Mm2 SINE B2 1 192 -3 1 1366 545 172 30 0 chr11 102442001 102442100 -19401756 + B1F2 SINE Alu 31 132 -17 1 1366 522 313 37 28 chr11 102442132 102442349 -19401507 + ID_B1 SINE B4 3 221 -3 1 1366 373 222 9 83 chr11 102443483 102443591 -19400265 + PB1D7 SINE Alu 13 112 -8 1 1366 236 40 80 0 chr11 102444673 102444723 -19399133 + (TTG)n Simple_repeat Simple_repeat 2 55 0 1 1366 865 139 16 0 chr11 102444737 102444866 -19398990 - B1_Mur4 SINE Alu -18 132 2 1 1366 198 0 0 0 chr11 102445043 102445065 -19398791 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1 1366 1166 69 7 0 chr11 102445080 102445225 -19398631 - B1_Mus2 SINE Alu -1 146 1 1 1366 384 205 0 103 chr11 102445430 102445517 -19398339 + B1_Mur3 SINE Alu 2 79 -70 1 1366 1144 202 14 14 chr11 102445517 102445728 -19398128 + B3 SINE B2 1 211 -5 1 1366 244 210 126 69 chr11 102445876 102445894 -19397962 - B4 SINE B4 -200 92 1 1 1366 525 72 0 0 chr11 102445894 102445963 -19397893 - B2_Mm2 SINE B2 -126 69 1 1 1366 33 0 0 0 chr11 102446076 102446109 -19397747 + AT_rich Low_complexity Low_complexity 1 33 0 1 1366 394 108 0 159 chr11 102446766 102446854 -19397002 + PB1D9 SINE Alu 45 118 -2 1 1366 604 245 0 55 chr11 102446865 102446894 -19396962 + ID_B1 SINE B4 66 219 -4 1 1366 951 119 0 0 chr11 102446894 102447028 -19396828 + B1_Mus2 SINE Alu 9 142 -5 1 1366 685 238 0 7 chr11 102447060 102447198 -19396658 + ORR1E LTR MaLR 6 132 -227 1 1366 1888 98 57 125 chr11 102447620 102447971 -19395885 - ORR1A2 LTR MaLR 0 327 1 1 1366 877 219 27 43 chr11 102448103 102448289 -19395567 + B3 SINE B2 1 183 -33 1 1366 725 130 19 0 chr11 102448288 102448396 -19395460 + PB1D9 SINE Alu 9 118 -2 1 1366 1218 74 0 0 chr11 102448466 102448614 -19395242 - B1_Mus1 SINE Alu 0 148 1 1 1366 1647 21 21 0 chr11 102448687 102448875 -19394981 + B2_Mm1a SINE B2 2 193 0 1 1366 243 0 0 0 chr11 102448902 102448929 -19394927 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1366 626 275 64 20 chr11 102448943 102449147 -19394709 + B3 SINE B2 2 214 -2 1 1366 222 37 0 0 chr11 102449153 102449180 -19394676 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1366 775 180 0 67 chr11 102449180 102449329 -19394527 - B1_Mus1 SINE Alu -9 139 1 1 1366 188 163 0 23 chr11 102449342 102449386 -19394470 + GA-rich Low_complexity Low_complexity 3 45 0 1 1366 322 381 60 35 chr11 102449392 102449879 -19393977 - MER52-int LTR ERV1 -4506 2585 2087 1 1366 830 258 27 0 chr11 102450096 102450282 -19393574 - B3 SINE B2 0 216 26 1 1366 25 0 0 0 chr11 102450335 102450360 -19393496 + AT_rich Low_complexity Low_complexity 1 25 0 1 1366 1125 95 0 0 chr11 102450360 102450507 -19393349 - B1_Mus1 SINE Alu 0 148 2 1 1366 790 127 36 91 chr11 102450508 102450673 -19393183 - B2_Mm2 SINE B2 -2 193 38 1 1366 792 259 96 0 chr11 102450678 102450875 -19392981 - B3 SINE B2 0 216 1 1 1366 660 200 0 0 chr11 102451148 102451288 -19392568 + CT-rich Low_complexity Low_complexity 4 143 0 1 1366 234 254 0 48 chr11 102451289 102451351 -19392505 - ID_B1 SINE B4 -1 223 165 1 1366 419 240 0 91 chr11 102451296 102451406 -19392450 - B1_Mur2 SINE Alu -8 141 42 1 1366 198 229 0 0 chr11 102451409 102451479 -19392377 + CT-rich Low_complexity Low_complexity 2 71 0 1 1366 676 203 83 0 chr11 102451855 102451988 -19391868 + B1_Mm SINE Alu 3 146 -1 1 1366 682 214 85 53 chr11 102452037 102452225 -19391631 + B3A SINE B2 5 198 0 1 1366 22 0 0 0 chr11 102452225 102452247 -19391609 + AT_rich Low_complexity Low_complexity 1 22 0 1 1366 338 84 120 53 chr11 102452247 102452322 -19391534 + RLTR25B LTR ERVK 430 509 -519 1 1366 788 56 0 18 chr11 102452258 102452353 -19391503 + B1_Mus2 SINE Alu 41 135 -12 1 1366 959 111 17 17 chr11 102452353 102452528 -19391328 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 1 1366 1036 123 14 7 chr11 102452528 102452675 -19391181 + B1_Mur3 SINE Alu 1 148 -1 1 1366 788 56 0 18 chr11 102452675 102452687 -19391169 + B1_Mus2 SINE Alu 136 146 -1 1 1366 1118 45 15 0 chr11 102452972 102453106 -19390750 + B1_Mus1 SINE Alu 1 136 -12 1 1366 264 30 0 0 chr11 102453107 102453140 -19390716 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1366 577 241 0 0 chr11 102453539 102453647 -19390209 + ID_B1 SINE B4 115 222 -2 1 1366 1296 119 11 0 chr11 102454281 102454466 -19389390 + B2_Mm1t SINE B2 1 187 -6 1 1366 287 303 156 0 chr11 102454474 102454540 -19389316 + RSINE1 SINE B4 16 97 -68 1 1366 420 20 0 0 chr11 102454540 102454589 -19389267 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1366 287 303 156 0 chr11 102454589 102454631 -19389225 + RSINE1 SINE B4 98 140 -25 1 1366 259 271 35 12 chr11 102454632 102454702 -19389154 + RMER15 LTR ERVL 2 74 -501 1 1366 1653 32 0 0 chr11 102454702 102454890 -19388966 + B2_Mm1a SINE B2 2 189 -4 1 1366 259 271 35 12 chr11 102454890 102454905 -19388951 + RMER15 LTR ERVL 75 88 -487 1 1366 1704 199 224 19 chr11 102454959 102455374 -19388482 + RMER15 LTR ERVL 58 557 -18 1 1366 21 71 0 0 chr11 102455415 102455457 -19388399 + AT_rich Low_complexity Low_complexity 1 42 0 1 1366 1269 95 39 16 chr11 102455459 102455641 -19388215 + B2_Mm2 SINE B2 2 187 -8 1 1366 703 231 20 20 chr11 102455667 102455813 -19388043 - B1_Mur4 SINE Alu -2 148 3 1 1366 843 190 0 14 chr11 102455848 102455987 -19387869 + B1_Mm SINE Alu 3 139 -8 1 1366 285 208 0 0 chr11 102456004 102456081 -19387775 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1366 326 206 16 16 chr11 102456110 102456174 -19387682 - RSINE1 SINE B4 -42 123 60 1 1366 337 241 0 34 chr11 102456179 102456279 -19387577 - B4A SINE B4 -64 228 137 1 1366 936 39 156 0 chr11 102456396 102456524 -19387332 - B1_Mus1 SINE Alu 0 148 1 1 1366 548 212 259 23 chr11 102457800 102457974 -19385882 - B3 SINE B2 -1 215 1 1 1366 496 312 111 22 chr11 102457976 102458156 -19385700 - ID_B1 SINE B4 -14 210 15 1 1366 387 233 24 0 chr11 102458205 102458287 -19385569 - B3 SINE B2 -86 130 47 1 1366 1064 117 81 32 chr11 102458455 102458640 -19385216 - B2_Mm2 SINE B2 0 195 2 1 1366 1247 35 7 0 chr11 102458670 102458815 -19385041 + B1_Mus2 SINE Alu 2 147 0 1 1366 493 197 10 13 chr11 102458834 102458947 -19384909 - B1_Mur4 SINE Alu 0 120 10 1 1366 375 221 0 14 chr11 102458946 102459015 -19384841 - ID_B1 SINE B4 -13 211 144 1 1366 405 278 10 10 chr11 102458994 102459092 -19384764 + RSINE1 SINE B4 57 154 -11 1 1366 326 268 62 0 chr11 102459648 102459760 -19384096 - L1MA5 LINE L1 -36 6264 6146 1 1366 1214 54 14 0 chr11 102459799 102459946 -19383910 + B1_Mur4 SINE Alu 2 150 0 1 1366 285 29 0 0 chr11 102459948 102459982 -19383874 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1366 903 209 91 5 chr11 102460230 102460427 -19383429 + B3 SINE B2 3 216 0 1 1366 402 191 130 28 chr11 102460444 102460552 -19383304 + PB1D9 SINE Alu 1 119 -1 1 1366 534 152 0 0 chr11 102460572 102460664 -19383192 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 1366 1089 79 169 6 chr11 102460816 102460982 -19382874 - B2_Mm2 SINE B2 0 195 3 1 1366 281 279 0 32 chr11 102460982 102461045 -19382811 + ID SINE ID 23 83 -141 1 1366 286 291 0 10 chr11 102461045 102461057 -19382799 + ID4 SINE ID 22 93 -59 1 1366 552 259 50 36 chr11 102461084 102461097 -19382759 - B1_Mur2 SINE Alu 0 149 139 1 1366 252 0 0 0 chr11 102461097 102461125 -19382731 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1366 552 261 49 43 chr11 102461125 102461268 -19382588 - B1_Mur2 SINE Alu -11 138 1 1 1366 795 254 0 84 chr11 102461283 102461498 -19382358 + B3A SINE B2 1 197 -1 1 1366 739 161 29 80 chr11 102461506 102461520 -19382336 - B2_Mm2 SINE B2 0 195 183 1 1366 1127 78 7 0 chr11 102461520 102461661 -19382195 - B1_Mus1 SINE Alu -2 146 5 1 1366 739 161 29 80 chr11 102461661 102461821 -19382035 - B2_Mm2 SINE B2 -13 182 30 1 1366 799 186 156 48 chr11 102462045 102462231 -19381625 - B3 SINE B2 -10 206 1 1 1366 1277 65 26 36 chr11 102462241 102462433 -19381423 - B2_Mm2 SINE B2 -5 190 1 1 1366 248 312 117 18 chr11 102462441 102462477 -19381379 - B2_Mm2 SINE B2 -10 185 7 1 1366 476 331 0 0 chr11 102462477 102462604 -19381252 - RSINE1 SINE B4 -31 134 8 1 1366 249 33 0 0 chr11 102462792 102462822 -19381034 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 1 1366 1519 58 16 0 chr11 102463105 102463295 -19380561 - B2_Mm2 SINE B2 -1 194 2 1 1366 501 259 88 0 chr11 102463332 102463479 -19380377 - B3 SINE B2 0 216 57 1 1366 607 203 75 8 chr11 102463560 102463694 -19380162 + B1_Mur3 SINE Alu 1 143 -6 1 1366 261 160 13 51 chr11 102463739 102463799 -19380057 + CT-rich Low_complexity Low_complexity 19 76 0 1 1366 1134 70 7 0 chr11 102463799 102463941 -19379915 - B1_Mus1 SINE Alu -5 143 1 1 1366 261 160 13 51 chr11 102463941 102463959 -19379897 + polypyrimidine Low_complexity Low_complexity 1 18 0 1 1366 293 302 22 44 chr11 102463961 102464051 -19379805 - PB1D7 SINE Alu -21 99 12 1 1366 183 80 0 0 chr11 102466087 102466112 -19377744 + (CTG)n Simple_repeat Simple_repeat 3 27 0 1 1366 21 0 0 0 chr11 102467858 102467879 -19375977 + AT_rich Low_complexity Low_complexity 1 21 0 1 1366 27 62 0 0 chr11 102467983 102468031 -19375825 + AT_rich Low_complexity Low_complexity 1 48 0 1 1366 192 297 40 81 chr11 102470403 102470502 -19373354 - L2 LINE L2 -2861 558 464 1 1366 246 196 39 0 chr11 102471804 102471855 -19372001 - L1M5 LINE L1 -466 5658 5606 1 1366 294 29 0 0 chr11 102471991 102472026 -19371830 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1366 276 205 0 152 chr11 102473322 102473414 -19370442 + ID4_ SINE ID 3 80 -3 1 1366 306 0 0 0 chr11 102473839 102473873 -19369983 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1366 762 88 0 0 chr11 102473886 102473988 -19369868 - BC1_Mm scRNA scRNA -49 103 2 1 1366 267 251 83 75 chr11 102474039 102474163 -19369693 - PB1D10 SINE Alu -15 135 16 1 1366 455 241 216 14 chr11 102474076 102474236 -19369620 - ID_B1 SINE B4 -101 191 1 1 1366 935 74 78 2 chr11 102474537 102474680 -19369176 + B2_Mm2 SINE B2 1 178 -38 1 1366 879 10 0 0 chr11 102474680 102474780 -19369076 + (GAA)n Simple_repeat Simple_repeat 3 102 0 1 1366 745 181 206 17 chr11 102474780 102474816 -19369040 + B3 SINE B2 179 214 -2 1 1366 481 301 95 26 chr11 102474916 102475148 -19368708 - LTR37A LTR ERV1 -40 386 139 1 1366 252 0 0 0 chr11 102475431 102475459 -19368397 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1366 1103 196 14 0 chr11 102475466 102475675 -19368181 - B3 SINE B2 -4 212 1 1 1366 445 279 35 56 chr11 102475812 102475838 -19368018 + B4 SINE B4 72 212 -80 1 1366 747 161 76 0 chr11 102475838 102475956 -19367900 + B1_Mur2 SINE Alu 9 135 -14 1 1366 228 67 0 0 chr11 102475956 102475986 -19367870 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1366 1194 75 0 0 chr11 102476110 102476257 -19367599 - B1_Mus1 SINE Alu 0 148 2 1 1366 868 132 15 23 chr11 102476327 102476459 -19367397 + B1_Mur4 SINE Alu 5 135 -15 1 1366 312 347 8 46 chr11 102476460 102476590 -19367266 + MER117 DNA MER1_type 67 191 -6 1 1366 392 277 29 10 chr11 102476663 102476765 -19367091 - PB1D9 SINE Alu -14 106 3 1 1366 344 286 50 0 chr11 102476878 102476997 -19366859 + MER5A1 DNA MER1_type 42 166 0 1 1366 545 268 164 43 chr11 102477349 102477517 -19366339 + B3A SINE B2 9 194 -22 1 1366 1239 48 7 0 chr11 102477517 102477664 -19366192 + B1_Mus1 SINE Alu 1 148 0 1 1366 476 276 141 57 chr11 102477664 102477687 -19366169 + B3 SINE B2 195 215 -1 1 1366 925 182 115 0 chr11 102477697 102477889 -19365967 + B3 SINE B2 3 216 0 1 1366 1311 87 16 27 chr11 102477917 102478105 -19365751 - B2_Mm2 SINE B2 -9 186 1 1 1366 286 221 211 46 chr11 102478622 102478731 -19365125 + ID_B1 SINE B4 91 217 -7 1 1366 626 304 7 0 chr11 102478739 102478887 -19364969 + RSINE1 SINE B4 4 152 -13 1 1366 298 284 135 1 chr11 102478928 102479060 -19364796 + MLT1H1 LTR MaLR 44 243 -352 1 1366 325 330 16 25 chr11 102479093 102479214 -19364642 - L2b LINE L2 -156 3219 3100 1 1366 288 277 13 90 chr11 102479462 102479617 -19364239 + B1F SINE Alu 6 148 -1 1 1366 481 121 40 0 chr11 102479702 102479801 -19364055 + (CAGA)n Simple_repeat Simple_repeat 2 104 0 1 1366 439 198 37 0 chr11 102479801 102479882 -19363974 - B3 SINE B2 -131 85 2 1 1366 951 141 21 7 chr11 102479886 102480029 -19363827 - B1_Mus2 SINE Alu -1 146 2 1 1366 1086 102 12 35 chr11 102480235 102480407 -19363449 + URR1A DNA MER1_type 59 226 0 1 1366 21 36 0 0 chr11 102480532 102480560 -19363296 + AT_rich Low_complexity Low_complexity 1 28 0 1 1366 832 202 197 0 chr11 102480592 102480770 -19363086 - B3 SINE B2 -3 213 1 1 1366 835 234 26 0 chr11 102480839 102481031 -19362825 + B3 SINE B2 1 197 -19 1 1366 309 146 0 0 chr11 102481031 102481080 -19362776 + (ATG)n Simple_repeat Simple_repeat 2 50 0 1 1366 743 67 87 0 chr11 102481112 102481216 -19362640 - BC1_Mm scRNA scRNA -39 113 1 1 1366 732 161 84 35 chr11 102481372 102481514 -19362342 - B1_Mur1 SINE Alu 0 149 1 1 1366 1238 233 119 21 chr11 102481515 102481852 -19362004 - MTEb LTR MaLR -7 372 3 1 1366 290 311 38 28 chr11 102482036 102482142 -19361714 + MLT1H LTR MaLR 100 206 -343 1 1366 1461 60 0 0 chr11 102482151 102482336 -19361520 + B2_Mm1a SINE B2 9 193 0 1 1366 1223 61 0 0 chr11 102482353 102482501 -19361355 + B1_Mus1 SINE Alu 1 148 0 1 1366 806 129 92 21 chr11 102482518 102482660 -19361196 - B2_Mm2 SINE B2 -27 168 17 1 1366 383 206 14 0 chr11 102482760 102482833 -19361023 + ID4_ SINE ID 6 79 -4 1 1366 279 235 94 0 chr11 102482833 102482845 -19361011 + B4A SINE B4 6 98 -194 1 1366 280 41 40 20 chr11 102482930 102482980 -19360876 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 1 1366 1184 68 7 0 chr11 102482980 102483127 -19360729 - B1_Mus1 SINE Alu 0 148 1 1 1366 271 327 29 82 chr11 102483140 102483310 -19360546 + MLT1H LTR MaLR 327 487 -2 1 1366 215 312 51 51 chr11 102483949 102484047 -19359809 - MIR3 SINE MIR -20 188 91 1 1366 1833 133 77 74 chr11 102484212 102484522 -19359334 + ORR1B2 LTR MaLR 1 327 -40 1 1366 1194 43 0 0 chr11 102484522 102484660 -19359196 + B1_Mus2 SINE Alu 1 138 -9 1 1366 216 0 0 0 chr11 102484660 102484684 -19359172 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1366 1833 133 77 74 chr11 102484684 102484738 -19359118 + ORR1B2 LTR MaLR 328 366 -1 1 1366 378 0 0 0 chr11 102484829 102484871 -19358985 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1366 238 218 48 71 chr11 102485135 102485219 -19358637 - ID4 SINE ID -1 82 1 1 1366 201 410 44 22 chr11 102486217 102486354 -19357502 - MER91C DNA Tip100 0 140 1 1 1366 297 51 0 0 chr11 102487005 102487044 -19356812 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1366 801 82 0 0 chr11 102487268 102487378 -19356478 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1 1366 189 107 0 0 chr11 102487389 102487417 -19356439 + (TCC)n Simple_repeat Simple_repeat 3 30 0 1 1366 782 157 42 21 chr11 102487419 102487562 -19356294 - B1_Mur3 SINE Alu -1 148 3 1 1366 207 0 0 0 chr11 102487585 102487608 -19356248 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1366 1209 35 7 0 chr11 102487610 102487752 -19356104 - B1_Mm SINE Alu -4 143 1 1 1366 322 285 224 7 chr11 102488437 102488589 -19355267 + MIR3 SINE MIR 16 200 -8 1 1366 561 267 42 42 chr11 102489267 102489464 -19354392 + ID_B1 SINE B4 59 253 -39 1 1366 21 36 0 0 chr11 102489630 102489658 -19354198 + AT_rich Low_complexity Low_complexity 1 28 0 1 1366 406 226 39 200 chr11 102489662 102489817 -19354039 - B1F1 SINE Alu -7 142 13 1 1366 463 215 33 0 chr11 102489733 102489823 -19354033 - ID_B1 SINE B4 -47 177 89 1 1366 214 333 0 0 chr11 102489878 102489935 -19353921 - MER5A DNA MER1_type -94 95 39 1 1366 1649 36 0 10 chr11 102490302 102490497 -19353359 - B2_Mm1a SINE B2 0 193 1 1 1366 23 0 0 0 chr11 102490536 102490559 -19353297 + AT_rich Low_complexity Low_complexity 1 23 0 1 1366 490 273 91 0 chr11 102490589 102490721 -19353135 + B1F SINE Alu 1 144 -5 1 1366 188 105 79 0 chr11 102490739 102490777 -19353079 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1 1366 311 243 0 41 chr11 102490796 102490869 -19352987 + ID4_ SINE ID 14 83 0 1 1366 430 240 27 63 chr11 102490918 102491029 -19352827 + PB1 SINE Alu 9 115 -12 1 1366 256 224 0 8 chr11 102491055 102491121 -19352735 + PB1D9 SINE Alu 64 127 0 1 1366 657 234 113 15 chr11 102491202 102491397 -19352459 - B3 SINE B2 -1 215 2 1 1366 363 105 0 0 chr11 102491420 102491477 -19352379 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1366 297 216 135 11 chr11 102491479 102491568 -19352288 - RSINE1 SINE B4 -62 103 4 1 1366 234 312 189 16 chr11 102491822 102491949 -19351907 + B4A SINE B4 76 224 -68 1 1366 572 204 16 25 chr11 102491836 102491958 -19351898 + PB1D10 SINE Alu 7 117 0 1 1366 298 322 92 38 chr11 102492976 102493220 -19350636 - MIRb SINE MIR -4 264 2 1 1366 347 241 12 0 chr11 102493277 102493360 -19350496 + B4 SINE B4 1 84 -208 1 1366 319 300 0 43 chr11 102493407 102493501 -19350355 + B4A SINE B4 182 271 -21 1 1366 227 286 0 0 chr11 102494361 102494424 -19349432 + C-rich Low_complexity Low_complexity 1 63 0 1 1366 215 343 0 0 chr11 102494770 102494837 -19349019 - L2a LINE L2 0 3426 3360 1 1366 305 121 0 49 chr11 102495022 102495083 -19348773 + CT-rich Low_complexity Low_complexity 1 58 0 1 1366 214 105 0 81 chr11 102495396 102495422 -19348434 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1366 1162 68 0 0 chr11 102495422 102495568 -19348288 + B1_Mm SINE Alu 1 146 -1 1 1366 214 105 0 81 chr11 102495568 102495603 -19348253 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1366 1199 115 11 11 chr11 102495623 102495808 -19348048 - B2_Mm2 SINE B2 -9 186 2 1 1366 1484 88 0 5 chr11 102495824 102496019 -19347837 - B2_Mm2 SINE B2 0 195 2 1 1366 263 357 35 9 chr11 102496149 102496262 -19347594 + Zaphod DNA Tip100 3914 4029 -2 1 1366 890 200 108 0 chr11 102496263 102496387 -19347469 + B3 SINE B2 2 126 -90 1 1366 639 71 0 0 chr11 102496387 102496472 -19347384 + (TTCCC)n Simple_repeat Simple_repeat 5 89 0 1 1366 890 200 108 0 chr11 102496472 102496532 -19347324 + B3 SINE B2 127 205 -11 1 1366 405 0 0 0 chr11 102496544 102496589 -19347267 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1366 229 211 70 0 chr11 102496947 102497004 -19346852 - ORR1C2 LTR MaLR -323 61 1 1 1366 1215 55 0 0 chr11 102497046 102497191 -19346665 - B1_Mus2 SINE Alu 0 147 3 1 1366 342 0 0 0 chr11 102497277 102497315 -19346541 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1366 181 53 79 0 chr11 102497344 102497382 -19346474 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1366 617 175 43 9 chr11 102497383 102497498 -19346358 - PB1D9 SINE Alu 0 120 2 1 1366 353 274 79 35 chr11 102497565 102497736 -19346120 + MIRb SINE MIR 4 172 -36 1 1366 318 26 0 0 chr11 102497855 102497894 -19345962 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1366 653 236 39 0 chr11 102497898 102498025 -19345831 - B1F2 SINE Alu -17 132 1 1 1367 334 234 0 0 chr11 102498833 102498897 -19344959 + ID4 SINE ID 1 64 -19 1 1367 985 195 4 97 chr11 102499215 102499453 -19344403 - B3 SINE B2 0 216 1 1 1367 306 0 0 0 chr11 102499471 102499505 -19344351 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1 1367 701 285 4 94 chr11 102501182 102501289 -19342567 - ID_B1 SINE B4 -2 222 124 1 1367 321 26 0 0 chr11 102501289 102501327 -19342529 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2 1367 3705 93 4 0 chr11 102501328 102501835 -19342021 - L1_Mus3 LINE L1 -16 6622 6114 3 1367 701 285 4 94 chr11 102501835 102501969 -19341887 - ID_B1 SINE B4 -101 123 1 1 1367 279 0 0 0 chr11 102502104 102502135 -19341721 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1367 373 235 0 12 chr11 102502149 102502231 -19341625 + ID4 SINE ID 1 81 -2 5 1367 27 49 0 0 chr11 102502666 102502707 -19341149 + AT_rich Low_complexity Low_complexity 1 41 0 6 1367 417 39 0 0 chr11 102502806 102502857 -19340999 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1367 1193 138 32 5 chr11 102502959 102503148 -19340708 - B2_Mm2 SINE B2 0 195 2 8 1367 1383 67 17 11 chr11 102503165 102503345 -19340511 + B2_Mm2 SINE B2 1 181 -14 9 1367 357 259 12 12 chr11 102503352 102503434 -19340422 + ID2 SINE ID 2 83 0 1 1367 264 122 0 0 chr11 102503436 102503477 -19340379 + (GGA)n Simple_repeat Simple_repeat 3 43 0 1 1367 1084 214 14 10 chr11 102503480 102503688 -19340168 + B3 SINE B2 2 210 -6 1 1367 280 224 35 0 chr11 102504221 102504279 -19339577 - ID4 SINE ID -22 61 2 1 1367 1333 76 21 21 chr11 102504575 102504764 -19339092 + B2_Mm2 SINE B2 1 189 -6 1 1367 323 60 20 0 chr11 102504937 102504987 -19338869 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1367 24 32 0 0 chr11 102504987 102505018 -19338838 + AT_rich Low_complexity Low_complexity 1 31 0 1 1367 337 250 24 0 chr11 102505057 102505141 -19338715 - PB1D10 SINE Alu -31 86 1 1 1367 720 221 15 73 chr11 102505719 102505924 -19337932 + B3A SINE B2 1 193 -5 1 1367 188 122 24 0 chr11 102505942 102505983 -19337873 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1367 740 154 66 7 chr11 102505994 102506131 -19337725 - B1_Mur3 SINE Alu -2 147 3 2 1367 334 250 40 0 chr11 102506173 102506273 -19337583 + PB1 SINE Alu 22 125 -2 2 1367 1445 76 11 0 chr11 102506296 102506480 -19337376 - B2_Mm2 SINE B2 -8 187 2 2 1367 564 308 41 18 chr11 102506533 102506751 -19337105 - ID_B1 SINE B4 0 224 2 2 1367 225 350 96 10 chr11 102507217 102507321 -19336535 - MIRc SINE MIR -34 234 122 2 1367 428 172 11 0 chr11 102507429 102507516 -19336340 + CT-rich Low_complexity Low_complexity 3 90 0 2 1367 243 0 0 0 chr11 102507793 102507820 -19336036 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1367 242 282 70 0 chr11 102507922 102507993 -19335863 + ID4 SINE ID 4 79 -4 2 1367 388 269 0 41 chr11 102508020 102508117 -19335739 + PB1D10 SINE Alu 12 104 -13 2 1367 568 160 11 0 chr11 102508149 102508243 -19335613 - B1_Mus2 SINE Alu -43 104 10 2 1367 466 248 128 54 chr11 102508282 102508431 -19335425 + B3A SINE B2 1 160 -38 3 1367 769 215 7 0 chr11 102508433 102508568 -19335288 + B1_Mur1 SINE Alu 1 136 -13 3 1367 219 36 0 0 chr11 102508568 102508596 -19335260 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1367 429 339 8 0 chr11 102508615 102508736 -19335120 + B4A SINE B4 10 131 -161 3 1367 427 271 188 6 chr11 102508799 102508959 -19334897 + B3 SINE B2 1 189 -27 3 1367 483 241 58 29 chr11 102509016 102509153 -19334703 + ID_B1 SINE B4 76 216 -8 3 1367 609 250 70 6 chr11 102509642 102509799 -19334057 + ID_B1 SINE B4 2 168 -56 3 1367 976 123 212 0 chr11 102510124 102510294 -19333562 + B3 SINE B2 1 206 -10 3 1367 750 251 33 22 chr11 102510323 102510506 -19333350 - B3 SINE B2 0 216 32 3 1367 310 293 11 89 chr11 102510713 102510803 -19333053 + B1_Mur3 SINE Alu 8 90 -59 3 1367 207 161 0 0 chr11 102510852 102510908 -19332948 + T-rich Low_complexity Low_complexity 1 56 0 4 1367 849 158 0 0 chr11 102510917 102511056 -19332800 - B1_Mur4 SINE Alu -11 139 1 4 1367 266 311 0 26 chr11 102511211 102511287 -19332569 + RSINE1 SINE B4 75 148 -17 4 1367 409 134 35 9 chr11 102511300 102511413 -19332443 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 4 1367 307 171 143 13 chr11 102511910 102511987 -19331869 + ID SINE ID 3 89 -135 4 1367 198 143 0 0 chr11 102512013 102512048 -19331808 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1367 953 41 0 8 chr11 102512050 102512173 -19331683 + (TTCCC)n Simple_repeat Simple_repeat 4 125 0 4 1367 312 27 0 0 chr11 102512173 102512209 -19331647 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 4 1367 389 109 16 0 chr11 102512212 102512276 -19331580 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1367 539 211 48 21 chr11 102512276 102512421 -19331435 - B1_Mur4 SINE Alu -1 149 1 4 1367 407 197 0 0 chr11 102512426 102512502 -19331354 + ID_B1 SINE B4 148 223 -1 4 1367 415 238 114 61 chr11 102512979 102513207 -19330649 + MIRc SINE MIR 27 266 -2 5 1367 213 296 0 75 chr11 102513507 102513613 -19330243 - MIR SINE MIR -96 172 72 5 1367 491 200 26 35 chr11 102513625 102513739 -19330117 + PB1D10 SINE Alu 1 113 -4 5 1367 1002 133 190 16 chr11 102513881 102514065 -19329791 + B3 SINE B2 1 216 0 5 1367 583 239 11 87 chr11 102514098 102514242 -19329614 - B3A SINE B2 -27 171 39 5 1367 1162 128 16 11 chr11 102514242 102514432 -19329424 + B2_Mm2 SINE B2 2 192 -3 5 1367 583 239 11 87 chr11 102514432 102514470 -19329386 - B3A SINE B2 -160 38 3 5 1367 187 103 51 0 chr11 102514524 102514563 -19329293 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1367 663 206 53 94 chr11 102514568 102514739 -19329117 - RSINE1 SINE B4 0 165 2 5 1367 898 218 19 5 chr11 102515292 102515499 -19328357 - B3 SINE B2 -6 210 1 5 1367 650 279 17 11 chr11 102515532 102515713 -19328143 - B3A SINE B2 -16 182 1 5 1367 280 284 0 11 chr11 102515998 102516087 -19327769 + MER121 Unknown Unknown 115 202 -210 6 1367 649 170 0 0 chr11 102516467 102516567 -19327289 - PB1D9 SINE Alu -17 103 4 6 1367 254 291 81 42 chr11 102516784 102517068 -19326788 + RMER17C LTR ERVK 46 340 -70 6 1367 353 258 111 61 chr11 102517092 102517290 -19326566 + ORR1E LTR MaLR 80 287 -72 6 1367 227 280 47 31 chr11 102517288 102517417 -19326439 + ORR1E LTR MaLR 248 378 -1 6 1367 189 364 23 0 chr11 102517562 102517650 -19326206 + MIRb SINE MIR 40 129 -139 6 1367 613 158 123 0 chr11 102517734 102517848 -19326008 + B1_Mus2 SINE Alu 13 140 -7 6 1367 429 273 101 8 chr11 102517874 102518003 -19325853 + RSINE1 SINE B4 8 148 -17 6 1367 204 227 23 0 chr11 102518895 102518939 -19324917 + CT-rich Low_complexity Low_complexity 1 45 0 6 1367 289 182 10 137 chr11 102518939 102519041 -19324815 - PB1D9 SINE Alu -5 115 27 6 1367 229 299 20 40 chr11 102519073 102519174 -19324682 - MER58B DNA MER1_type -217 124 26 6 1367 238 234 11 154 chr11 102519158 102519249 -19324607 + RSINE1 SINE B4 88 165 0 7 1367 428 165 0 11 chr11 102519249 102519341 -19324515 + (CA)n Simple_repeat Simple_repeat 1 91 0 7 1367 224 143 357 0 chr11 102519402 102519458 -19324398 + B1_Mus1 SINE Alu 23 98 -50 7 1367 236 238 0 0 chr11 102519481 102519523 -19324333 + ID4_ SINE ID 2 43 -40 7 1367 718 186 287 0 chr11 102519724 102519762 -19324094 - B3 SINE B2 0 216 131 7 1367 243 88 0 0 chr11 102519762 102519796 -19324060 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 7 1367 718 186 287 0 chr11 102519796 102519924 -19323932 - B3 SINE B2 -86 130 3 7 1367 473 247 152 76 chr11 102519924 102520064 -19323792 - B4A SINE B4 -78 214 61 7 1367 1409 64 26 16 chr11 102520064 102520092 -19323764 - B2_Mm1t SINE B2 0 193 161 7 1367 222 37 0 0 chr11 102520092 102520119 -19323737 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1367 1409 64 26 16 chr11 102520119 102520281 -19323575 - B2_Mm1t SINE B2 -33 160 1 7 1367 473 247 152 76 chr11 102520281 102520337 -19323519 - B4A SINE B4 -232 60 3 7 1367 927 244 10 15 chr11 102521268 102521472 -19322384 - B3 SINE B2 -9 207 5 7 1367 702 216 41 33 chr11 102521487 102521731 -19322125 - MER33 DNA MER1_type -65 259 14 8 1367 587 280 45 6 chr11 102521755 102521931 -19321925 - MER5A DNA MER1_type -5 184 2 8 1367 427 287 0 8 chr11 102522113 102522236 -19321620 - RSINE1 SINE B4 -13 152 31 8 1367 300 196 0 0 chr11 102522263 102522314 -19321542 + ID4 SINE ID 33 83 0 7 1367 666 265 222 0 chr11 102522321 102522645 -19321211 + L1MC2 LINE L1 5432 5827 -517 8 1367 1300 90 26 21 chr11 102522647 102522839 -19321017 + B2_Mm2 SINE B2 2 194 -1 8 1367 315 113 31 46 chr11 102522853 102522918 -19320938 + PB1D9 SINE Alu 9 72 -48 8 1367 534 247 26 7 chr11 102523228 102523383 -19320473 + L1MC2 LINE L1 5827 5984 -349 8 1367 189 0 0 0 chr11 102523433 102523454 -19320402 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 8 1367 462 256 35 28 chr11 102523472 102523613 -19320243 - B3A SINE B2 -16 182 41 8 1367 493 298 119 11 chr11 102523649 102523927 -19319929 + L1MC2 LINE L1 6026 6333 0 8 1367 784 139 79 14 chr11 102523947 102524075 -19319781 + B1_Mur4 SINE Alu 3 140 -10 8 1367 513 0 0 0 chr11 102524075 102524132 -19319724 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1367 261 273 0 0 chr11 102524394 102524460 -19319396 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 9 1367 3093 141 28 35 chr11 102524461 102525040 -19318816 - RMER15 LTR ERVL 0 575 1 9 1367 511 160 0 0 chr11 102525116 102525210 -19318646 - B1_Mur3 SINE Alu 0 149 54 9 1367 666 211 56 7 chr11 102525250 102525393 -19318463 + B1_Mur4 SINE Alu 1 150 0 9 1367 320 310 153 14 chr11 102525448 102525592 -19318264 - RSINE1 SINE B4 0 165 2 9 1367 501 234 156 22 chr11 102525592 102525771 -19318085 - B4 SINE B4 -65 227 25 9 1367 21 0 0 0 chr11 102526841 102526862 -19316994 + GC_rich Low_complexity Low_complexity 1 21 0 9 1367 208 211 0 0 chr11 102526948 102526986 -19316870 + (CGG)n Simple_repeat Simple_repeat 2 39 0 9 1367 268 257 0 0 chr11 102527829 102527899 -19315957 + C-rich Low_complexity Low_complexity 1 70 0 9 1367 183 80 0 0 chr11 102528057 102528082 -19315774 + (TA)n Simple_repeat Simple_repeat 2 26 0 9 1367 356 226 108 0 chr11 102528125 102528218 -19315638 - RSINE1 SINE B4 -20 145 43 1 1367 26 40 0 20 chr11 102528325 102528357 -19315499 + AT_rich Low_complexity Low_complexity 1 32 0 1 1367 1077 107 7 0 chr11 102528357 102528506 -19315350 + B1_Mur4 SINE Alu 1 150 0 1 1367 26 40 0 20 chr11 102528506 102528524 -19315332 + AT_rich Low_complexity Low_complexity 1 18 0 1 1367 236 149 64 0 chr11 102528572 102528619 -19315237 - B3 SINE B2 -161 55 6 1 1367 640 143 50 8 chr11 102528924 102529044 -19314812 - B1_Mus2 SINE Alu -21 126 2 1 1367 765 217 68 5 chr11 102529089 102529279 -19314577 - B3 SINE B2 -14 202 1 1 1367 793 280 9 14 chr11 102530050 102530260 -19313596 - B3 SINE B2 -7 209 1 1 1367 1516 53 21 0 chr11 102530280 102530470 -19313386 - B2_Mm2 SINE B2 0 195 2 1 1367 510 250 62 7 chr11 102530512 102530657 -19313199 - RSINE1 SINE B4 0 165 13 1 1367 649 177 158 37 chr11 102530704 102530868 -19312988 + B2_Mm2 SINE B2 1 184 -11 1 1367 674 173 52 15 chr11 102531415 102531550 -19312306 + B1_Mur2 SINE Alu 10 149 0 1 1367 663 233 6 64 chr11 102532013 102532169 -19311687 - B1_Mm SINE Alu 0 147 1 1 1367 180 0 0 0 chr11 102532200 102532220 -19311636 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1367 595 140 0 0 chr11 102532233 102532326 -19311530 - B1_Mur4 SINE Alu -33 117 25 1 1367 288 341 0 0 chr11 102532342 102532424 -19311432 - PB1D7 SINE Alu 0 120 39 1 1367 985 52 7 0 chr11 102532419 102532555 -19311301 - B1_Mus1 SINE Alu 0 148 12 1 1367 189 0 0 0 chr11 102532831 102532852 -19311004 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1367 611 237 14 14 chr11 102532856 102532997 -19310859 - B1_Mur1 SINE Alu -1 148 8 1 1367 355 315 13 63 chr11 102532997 102533015 -19310841 - ID_B1 SINE B4 -1 223 73 1 1367 401 244 13 0 chr11 102533323 102533401 -19310455 + ID4 SINE ID 1 79 -4 1 1367 26 0 0 0 chr11 102534663 102534689 -19309167 + AT_rich Low_complexity Low_complexity 1 26 0 1 1367 650 289 37 5 chr11 102534708 102534899 -19308957 + B3A SINE B2 1 197 -1 1 1367 862 168 28 0 chr11 102537306 102537449 -19306407 - B1_Mus1 SINE Alu 0 148 2 1 1367 1220 35 0 0 chr11 102537595 102537738 -19306118 + B1_Mus1 SINE Alu 1 143 -5 1 1367 234 216 0 19 chr11 102538330 102538382 -19305474 + ID_B1 SINE B4 145 195 -29 1 1367 1117 254 18 21 chr11 102538439 102538721 -19305135 - B4A SINE B4 -4 288 8 1 1367 248 200 48 107 chr11 102538820 102538904 -19304952 + ID SINE ID 3 81 -143 1 1367 608 212 0 33 chr11 102539006 102539128 -19304728 + RSINE1 SINE B4 4 121 -44 1 1367 378 0 0 0 chr11 102539652 102539694 -19304162 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1367 923 271 65 11 chr11 102539730 102540006 -19303850 - B4A SINE B4 0 292 2 1 1367 280 232 0 51 chr11 102540053 102540112 -19303744 + ID SINE ID 1 56 -168 1 1367 640 237 39 50 chr11 102540259 102540441 -19303415 + B3A SINE B2 3 182 -16 1 1367 270 0 0 0 chr11 102540453 102540483 -19303373 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1367 1173 81 68 17 chr11 102540602 102540779 -19303077 - B2_Mm2 SINE B2 -6 189 4 1 1367 550 222 48 0 chr11 102540797 102540923 -19302933 - B1_Mur1 SINE Alu -5 144 13 1 1367 22 0 0 0 chr11 102542577 102542599 -19301257 + AT_rich Low_complexity Low_complexity 1 22 0 1 1367 22 56 0 0 chr11 102542745 102542781 -19301075 + AT_rich Low_complexity Low_complexity 1 36 0 1 1367 411 299 47 29 chr11 102543813 102543985 -19299871 + ID_B1 SINE B4 2 176 -48 1 1367 272 118 0 0 chr11 102544005 102544056 -19299800 + ID_B1 SINE B4 117 167 -57 1 1367 924 157 174 20 chr11 102544106 102544301 -19299555 + URR1A DNA MER1_type 2 226 0 1 1367 295 277 125 21 chr11 102544396 102544492 -19299364 - RSINE1 SINE B4 0 165 60 1 1367 254 225 40 40 chr11 102544624 102544698 -19299158 + B4A SINE B4 219 292 0 1 1367 691 150 256 29 chr11 102544822 102544994 -19298862 + B3 SINE B2 1 211 -5 1 1367 671 191 36 54 chr11 102545072 102545238 -19298618 - B3 SINE B2 -3 213 51 1 1367 572 284 7 0 chr11 102545440 102545581 -19298275 + ID_B1 SINE B4 82 223 -1 1 1367 358 247 43 0 chr11 102546201 102546294 -19297562 - MER58C DNA MER1_type -118 97 1 1 1367 360 196 504 0 chr11 102546587 102546720 -19297136 - RMER30 DNA MER1_type -1 201 2 1 1367 350 278 108 27 chr11 102547121 102547232 -19296624 + PB1D7 SINE Alu 1 120 0 1 1367 739 182 125 26 chr11 102547949 102548141 -19295715 + B3 SINE B2 2 212 -4 1 1367 180 0 0 0 chr11 102548170 102548190 -19295666 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 1367 1226 56 0 0 chr11 102548191 102548351 -19295505 - B2_Mm2 SINE B2 -34 161 2 1 1367 988 169 11 17 chr11 102548829 102549010 -19294846 + B3 SINE B2 14 193 -23 1 1367 279 0 0 0 chr11 102549010 102549041 -19294815 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1367 22 0 0 0 chr11 102549287 102549309 -19294547 + AT_rich Low_complexity Low_complexity 1 22 0 1 1367 252 0 0 0 chr11 102549425 102549453 -19294403 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1367 263 217 29 14 chr11 102549499 102549569 -19294287 + ID_B1 SINE B4 148 218 -6 1 1367 849 196 0 0 chr11 102549623 102549771 -19294085 + B1_Mur1 SINE Alu 1 148 -1 1 1367 24 67 0 0 chr11 102549771 102549816 -19294040 + AT_rich Low_complexity Low_complexity 1 45 0 1 1367 242 264 69 0 chr11 102550458 102550545 -19293311 + B1F2 SINE Alu 31 123 -26 1 1367 367 104 39 77 chr11 102550618 102550722 -19293134 - L1Md_A LINE L1 0 6582 6483 1 1367 503 218 36 0 chr11 102550831 102550941 -19292915 + PB1D9 SINE Alu 1 114 -6 1 1367 759 225 137 20 chr11 102551005 102551254 -19292602 + MTEa LTR MaLR 26 303 -76 1 1367 336 228 93 34 chr11 102551885 102552003 -19291853 - RSINE1 SINE B4 -40 125 1 1 1367 430 247 0 0 chr11 102552090 102552179 -19291677 + B3A SINE B2 40 128 -70 1 1367 372 71 0 0 chr11 102552194 102552250 -19291606 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1367 246 55 71 18 chr11 102552807 102552863 -19290993 + (CAAAA)n Simple_repeat Simple_repeat 1 59 0 1 1367 248 277 148 26 chr11 102553092 102553207 -19290649 + RSINE1 SINE B4 2 130 -35 1 1367 1116 36 36 0 chr11 102553207 102553373 -19290483 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1367 1038 89 0 14 chr11 102553759 102553907 -19289949 - B1_Mur4 SINE Alu -3 147 2 1 1367 1289 20 0 0 chr11 102553937 102554083 -19289773 - B1_Mm SINE Alu 0 147 2 1 1367 237 50 48 48 chr11 102554184 102554247 -19289609 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1367 491 256 70 0 chr11 102554255 102554384 -19289472 - RSINE1 SINE B4 -24 141 4 1 1367 245 225 84 15 chr11 102554406 102554537 -19289319 - L1MA8 LINE L1 -88 6203 6064 1 1367 2692 135 118 17 chr11 102554733 102555252 -19288604 + RMER4B LTR ERVK 15 585 0 1 1367 517 221 0 0 chr11 102555284 102555388 -19288468 - PB1D7 SINE Alu -15 105 2 1 1367 21 0 0 0 chr11 102555690 102555711 -19288145 + GC_rich Low_complexity Low_complexity 1 21 0 1 1367 22 35 0 0 chr11 102555913 102555942 -19287914 + AT_rich Low_complexity Low_complexity 1 29 0 1 1367 620 78 0 22 chr11 102556459 102556551 -19287305 - B1_Mur4 SINE Alu 0 150 61 1 1367 30 0 0 0 chr11 102556953 102556983 -19286873 + AT_rich Low_complexity Low_complexity 1 30 0 1 1367 1373 86 21 11 chr11 102557017 102557205 -19286651 + B2_Mm2 SINE B2 1 190 -5 1 1367 936 215 0 0 chr11 102557495 102557658 -19286198 - B3 SINE B2 -53 163 1 1 1367 541 129 216 0 chr11 102557996 102558112 -19285744 - B1_Mur4 SINE Alu -1 149 9 1 1367 296 226 146 46 chr11 102558004 102558134 -19285722 - ID_B1 SINE B4 -9 215 73 1 1367 418 196 93 47 chr11 102558136 102558243 -19285613 - PB1D7 SINE Alu 0 120 9 1 1367 1704 168 108 12 chr11 102559585 102559929 -19283927 - MTD LTR MaLR -8 411 35 1 1367 299 299 10 0 chr11 102559967 102560064 -19283792 - MIRb SINE MIR -36 232 135 1 1367 367 133 51 51 chr11 102560064 102560143 -19283713 + B3 SINE B2 1 79 -137 1 1367 970 190 56 10 chr11 102560498 102560695 -19283161 - B3 SINE B2 -9 207 2 1 1367 484 236 87 24 chr11 102560730 102560856 -19283000 - B1F SINE Alu -10 139 6 1 1367 285 254 0 0 chr11 102560803 102560862 -19282994 - B4A SINE B4 -149 143 85 1 1367 225 243 0 79 chr11 102560862 102560875 -19282981 + YREP_Mm Unknown Unknown 259 324 -1488 1 1367 248 272 121 17 chr11 102561017 102561145 -19282711 + PB1D10 SINE Alu 2 141 -6 1 1367 1663 47 0 0 chr11 102561174 102561367 -19282489 + B2_Mm1a SINE B2 1 193 0 1 1367 948 124 13 52 chr11 102561549 102561702 -19282154 + B1_Mur2 SINE Alu 3 149 0 1 1367 501 160 16 16 chr11 102561702 102561823 -19282033 + GA-rich Low_complexity Low_complexity 3 123 0 1 1367 3197 55 10 15 chr11 102561832 102562234 -19281622 + MTB LTR MaLR 1 400 0 1 1367 227 310 28 0 chr11 102562296 102562367 -19281489 - ID2 SINE ID -1 82 10 1 1367 344 204 80 44 chr11 102562516 102562629 -19281227 + PB1D10 SINE Alu 1 117 0 1 1367 679 279 36 0 chr11 102562691 102562856 -19281000 - B3A SINE B2 -27 171 1 1 1367 231 361 0 78 chr11 102562940 102563069 -19280787 + PB1 SINE Alu 1 119 -1 2 1367 1149 125 11 0 chr11 102563069 102563245 -19280611 + B2_Mm1t SINE B2 2 179 -14 2 1367 284 109 0 127 chr11 102563296 102563342 -19280514 + B2_Mm2 SINE B2 47 89 -106 2 1367 6879 28 27 10 chr11 102563342 102564150 -19279706 - RLTR13B2 LTR ERVK 0 822 1 2 1367 284 147 0 131 chr11 102564150 102564176 -19279680 + B2_Mm2 SINE B2 90 109 -107 2 1367 300 27 0 0 chr11 102564182 102564219 -19279637 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2 1367 452 277 69 28 chr11 102564248 102564393 -19279463 + RSINE1 SINE B4 1 151 -14 2 1367 26 50 0 0 chr11 102564462 102564502 -19279354 + AT_rich Low_complexity Low_complexity 1 40 0 2 1367 1589 135 54 96 chr11 102564517 102564574 -19279282 - ORR1A4 LTR MaLR -8 321 287 2 1367 188 35 35 0 chr11 102564574 102564603 -19279253 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1367 1104 86 0 0 chr11 102564606 102564746 -19279110 - B1_Mus2 SINE Alu -6 141 2 2 1367 1589 135 54 96 chr11 102564746 102565019 -19278837 - ORR1A4 LTR MaLR -43 286 1 2 1367 914 220 53 37 chr11 102565019 102565207 -19278649 - B3 SINE B2 -24 192 2 2 1367 226 232 64 115 chr11 102565450 102565528 -19278328 + ID4 SINE ID 8 81 -2 2 1367 363 310 38 15 chr11 102565549 102565680 -19278176 - B3A SINE B2 -26 172 39 2 1367 1320 253 38 42 chr11 102566016 102566419 -19277437 + MTE2a LTR MaLR 5 419 0 2 1367 429 20 0 0 chr11 102566440 102566490 -19277366 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1367 225 0 0 0 chr11 102566563 102566588 -19277268 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1367 951 244 48 75 chr11 102566878 102566936 -19276920 - B4A SINE B4 -7 285 218 2 1367 216 0 0 0 chr11 102566936 102566960 -19276896 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1367 951 244 48 75 chr11 102566960 102567194 -19276662 - B4A SINE B4 -75 217 2 2 1367 393 232 72 21 chr11 102567240 102567337 -19276519 - B4 SINE B4 -6 286 185 2 1367 1064 183 69 0 chr11 102567410 102567612 -19276244 + B3 SINE B2 1 216 0 2 1367 2279 102 13 0 chr11 102567754 102568069 -19275787 + ORR1A2 LTR MaLR 1 319 -8 2 1367 507 92 0 0 chr11 102568082 102568147 -19275709 - ERVL-B4-int LTR ERVL -1236 4478 4414 2 1367 21 0 0 0 chr11 102568185 102568206 -19275650 + AT_rich Low_complexity Low_complexity 1 21 0 2 1367 521 274 156 18 chr11 102568760 102568927 -19274929 - B3A SINE B2 -5 193 4 2 1367 364 261 95 43 chr11 102568927 102569034 -19274822 - B4A SINE B4 -57 235 123 2 1367 868 233 49 5 chr11 102569100 102569303 -19274553 - B3 SINE B2 -4 212 1 2 1367 368 0 43 0 chr11 102569355 102569402 -19274454 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1367 988 73 66 0 chr11 102569402 102569538 -19274318 - B1_Mus1 SINE Alu -2 146 2 2 1367 700 227 93 20 chr11 102569799 102570046 -19273810 - Charlie7 DNA MER1_type -453 2159 1895 2 1367 886 228 15 31 chr11 102570035 102570230 -19273626 - B3 SINE B2 0 216 25 2 1367 536 299 0 62 chr11 102570264 102570410 -19273446 - ID_B1 SINE B4 -5 219 83 2 1367 289 293 24 0 chr11 102570422 102570504 -19273352 - Charlie7 DNA MER1_type -712 1900 1817 2 1367 383 253 63 0 chr11 102570516 102570611 -19273245 + PB1D7 SINE Alu 20 120 0 2 1367 753 241 274 10 chr11 102570926 102571232 -19272624 - MTD LTR MaLR -31 388 2 2 1367 253 155 53 66 chr11 102571351 102571427 -19272429 - Charlie7 DNA MER1_type -2451 161 87 2 1367 788 150 287 0 chr11 102571439 102571606 -19272250 + B3 SINE B2 2 216 0 2 1367 539 274 15 7 chr11 102571908 102572044 -19271812 - B1F1 SINE Alu -1 148 12 2 1367 277 242 169 70 chr11 102571950 102572092 -19271764 - MT2B LTR ERVL -343 258 103 2 1367 1055 188 103 21 chr11 102572780 102573044 -19270812 - RMER1B Other Other -14 1052 784 2 1367 466 50 0 0 chr11 102573044 102573104 -19270752 + RMER19A LTR ERVK 2 61 -676 2 1367 3595 53 40 17 chr11 102573121 102573597 -19270259 - RLTR1C LTR ERV1 -16 487 1 2 1367 2514 167 134 53 chr11 102573602 102574171 -19269685 + RMER19A LTR ERVK 123 737 0 2 1367 724 133 9 0 chr11 102574212 102574325 -19269531 - ORR1A4 LTR MaLR -211 118 5 2 1367 316 289 134 0 chr11 102574521 102574618 -19269238 - RMER1B Other Other -913 153 44 2 1367 351 0 0 0 chr11 102574931 102574970 -19268886 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 1367 204 125 0 0 chr11 102575023 102575055 -19268801 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1367 387 0 0 0 chr11 102575103 102575146 -19268710 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2 1367 415 309 35 26 chr11 102575146 102575259 -19268597 - RSINE1 SINE B4 -5 160 47 2 1367 2144 66 31 7 chr11 102575261 102575552 -19268304 - ORR1A2 LTR MaLR -29 298 1 2 1367 1078 241 22 13 chr11 102575593 102575824 -19268032 - B4A SINE B4 -58 234 2 2 1367 374 188 14 0 chr11 102575835 102575904 -19267952 - ID4_ SINE ID -10 73 4 2 1367 295 188 186 14 chr11 102575933 102576003 -19267853 - ID4 SINE ID 0 83 2 2 1367 1147 87 35 80 chr11 102576010 102576211 -19267645 - B2_Mm2 SINE B2 -3 192 1 2 1367 287 219 31 15 chr11 102576279 102576344 -19267512 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 2 1367 219 136 33 17 chr11 102576376 102576436 -19267420 + CT-rich Low_complexity Low_complexity 2 62 0 2 1367 272 222 15 73 chr11 102576659 102576727 -19267129 + ID_B1 SINE B4 96 159 -65 2 1367 2564 190 114 52 chr11 102576711 102577439 -19266417 + RMER17A2 LTR ERVK 134 906 0 2 1367 274 291 58 35 chr11 102577526 102577697 -19266159 - L1MC LINE L1 -2139 5743 5569 2 1367 249 237 111 63 chr11 102577755 102577881 -19265975 - L1MC LINE L1 -2411 5471 5340 2 1367 1271 34 0 0 chr11 102577986 102578132 -19265724 + B1_Mm SINE Alu 2 147 0 2 1367 228 35 0 0 chr11 102578139 102578168 -19265688 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1367 539 194 19 106 chr11 102578258 102578311 -19265545 - RMER4B LTR ERVK -35 431 405 2 1367 3198 135 22 10 chr11 102578311 102578811 -19265045 + RLTR19C LTR ERVK 1 506 0 2 1367 579 230 149 43 chr11 102578811 102579168 -19264688 - RMER4B LTR ERVK -62 404 1 2 1367 563 197 114 8 chr11 102579210 102579333 -19264523 - B1_Mus2 SINE Alu -10 137 2 2 1367 989 228 20 0 chr11 102579501 102579698 -19264158 + B3 SINE B2 3 203 -13 2 1367 412 191 254 35 chr11 102579732 102579846 -19264010 + B1_Mur2 SINE Alu 5 143 -6 2 1367 423 0 0 0 chr11 102579847 102579894 -19263962 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1367 23 33 0 0 chr11 102579947 102579977 -19263879 + AT_rich Low_complexity Low_complexity 1 30 0 2 1367 295 319 75 0 chr11 102580019 102580113 -19263743 - RSINE1 SINE B4 -11 154 54 2 1367 1368 63 0 0 chr11 102580131 102580336 -19263520 + (TTCC)n Simple_repeat Simple_repeat 1 205 0 2 1367 388 246 67 42 chr11 102580344 102580463 -19263393 - Charlie4z DNA MER1_type -14 153 32 2 1367 779 223 116 7 chr11 102580443 102580661 -19263195 - MTE2a LTR MaLR -139 240 1 2 1367 1054 75 30 0 chr11 102581489 102581623 -19262233 + B1_Mus2 SINE Alu 1 138 -9 2 1367 224 30 30 0 chr11 102581623 102581656 -19262200 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1367 3561 38 28 21 chr11 102581702 102582135 -19261721 - RLTR10C LTR ERVK 0 436 1 2 1367 4335 76 2 24 chr11 102582556 102583136 -19260720 + RMER2 LTR ERV1 1 567 0 2 1367 882 129 19 52 chr11 102584235 102584390 -19259466 - B1_Mur4 SINE Alu 0 150 1 2 1367 463 238 167 0 chr11 102584397 102584523 -19259333 - B1_Mur2 SINE Alu -2 147 1 2 1367 2408 189 83 19 chr11 102585568 102586098 -19257758 - RLTR12A LTR ERVK -4 564 1 2 1367 330 296 207 27 chr11 102586317 102586539 -19257317 + RMER20B LTR ERVK 250 511 -116 2 1367 1293 104 27 0 chr11 102586741 102586924 -19256932 - B2_Mm2 SINE B2 -7 188 1 2 1367 969 203 10 10 chr11 102587001 102587195 -19256661 - B3 SINE B2 0 216 23 2 1367 387 0 0 0 chr11 102587195 102587238 -19256618 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1367 237 175 25 0 chr11 102587261 102587301 -19256555 - RSINE1 SINE B4 -38 127 87 2 1367 599 223 166 33 chr11 102587311 102587492 -19256364 + B3 SINE B2 4 208 -8 2 1367 32 26 0 0 chr11 102587493 102587532 -19256324 + AT_rich Low_complexity Low_complexity 1 39 0 2 1367 1167 102 6 38 chr11 102587532 102587715 -19256141 - B2_Mm2 SINE B2 -18 177 1 2 1367 341 293 40 0 chr11 102587883 102587982 -19255874 - L2 LINE L2 -967 2452 2350 2 1367 316 197 30 56 chr11 102588334 102588430 -19255426 + B1_Mur2 SINE Alu 50 149 0 2 1367 180 0 0 0 chr11 102588430 102588450 -19255406 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1367 363 211 0 37 chr11 102588580 102588668 -19255188 - PB1D9 SINE Alu -4 123 38 2 1367 265 333 37 37 chr11 102588704 102588838 -19255018 - ID_B1 SINE B4 -68 156 23 2 1367 403 175 0 70 chr11 102589329 102589415 -19254441 + RSINE1 SINE B4 3 82 -83 2 1367 458 259 39 87 chr11 102589567 102589639 -19254217 + RSINE1 SINE B4 43 113 -52 2 1367 1275 79 67 0 chr11 102589639 102589817 -19254039 + B2_Mm2 SINE B2 2 191 -4 2 1367 458 259 39 87 chr11 102589817 102589871 -19253985 + RSINE1 SINE B4 114 163 -2 2 1367 225 154 0 0 chr11 102590344 102590383 -19253473 + T-rich Low_complexity Low_complexity 1 39 0 2 1367 862 182 0 13 chr11 102590383 102590533 -19253323 - B1_Mur3 SINE Alu 0 149 2 2 1367 717 165 9 29 chr11 102590709 102591015 -19252841 + CT-rich Low_complexity Low_complexity 1 299 0 2 1367 216 0 0 0 chr11 102591015 102591039 -19252817 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1367 464 228 158 0 chr11 102591332 102591459 -19252397 + B3 SINE B2 70 216 0 2 1367 308 322 121 9 chr11 102591497 102591613 -19252243 + RSINE1 SINE B4 6 134 -31 2 1367 594 75 0 0 chr11 102591639 102591719 -19252137 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1367 1227 81 0 0 chr11 102591721 102591881 -19251975 - B2_Mm2 SINE B2 -34 161 2 2 1367 894 140 204 17 chr11 102591899 102592080 -19251776 + B3 SINE B2 2 216 0 2 1367 889 168 0 20 chr11 102592083 102592229 -19251627 + B1_Mur3 SINE Alu 1 143 -6 3 1367 264 59 0 0 chr11 102592231 102592265 -19251591 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 3 1367 369 0 0 0 chr11 102592282 102592323 -19251533 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 1367 355 144 35 45 chr11 102592336 102592416 -19251440 - B1_Mur2 SINE Alu -8 141 59 3 1367 1235 48 0 0 chr11 102593078 102593224 -19250632 - B1_Mm SINE Alu 0 147 2 3 1367 189 0 0 0 chr11 102593684 102593705 -19250151 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1367 934 269 169 12 chr11 102594105 102594524 -19249332 + L1MB8 LINE L1 5588 6066 -118 3 1367 428 132 39 26 chr11 102594726 102594804 -19249052 - ID4 SINE ID 0 83 5 3 1367 825 109 34 0 chr11 102594823 102594970 -19248886 + (GGGA)n Simple_repeat Simple_repeat 4 155 0 3 1367 689 189 66 29 chr11 102595212 102595348 -19248508 + B1_Mur3 SINE Alu 9 149 0 3 1367 218 211 0 0 chr11 102595372 102595410 -19248446 + A-rich Low_complexity Low_complexity 2 39 0 3 1367 755 127 0 25 chr11 102595654 102595775 -19248081 - PB1D9 SINE Alu -1 119 2 3 1367 411 289 88 7 chr11 102596318 102596454 -19247402 + B3 SINE B2 1 147 -69 3 1367 568 152 11 0 chr11 102596395 102596487 -19247369 - B1_Mur4 SINE Alu -56 94 2 3 1367 299 312 0 40 chr11 102596533 102596633 -19247223 - B3A SINE B2 -100 98 3 3 1367 508 268 52 7 chr11 102596643 102596797 -19247059 - L1M4 LINE L1 -429 5745 5585 3 1367 196 328 49 0 chr11 102597011 102597072 -19246784 - MIRm SINE MIR -3 273 210 3 1367 201 138 0 0 chr11 102597072 102597101 -19246755 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 3 1367 194 0 39 0 chr11 102597921 102597947 -19245909 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1367 558 237 38 15 chr11 102597950 102598083 -19245773 - B1_Mur1 SINE Alu -13 136 1 3 1367 888 182 152 6 chr11 102598220 102598397 -19245459 - ID_B1 SINE B4 -17 207 5 3 1367 247 267 10 91 chr11 102598753 102598767 -19245089 + MT2B2 LTR ERVL 151 156 -428 3 1367 484 207 11 0 chr11 102598767 102598854 -19245002 + PB1D7 SINE Alu 1 88 -32 3 1367 386 308 57 9 chr11 102598984 102599089 -19244767 + PB1 SINE Alu 1 110 -17 3 1367 488 236 6 17 chr11 102599107 102599288 -19244568 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 1367 225 0 0 0 chr11 102600190 102600215 -19243641 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1367 403 250 8 65 chr11 102601270 102601394 -19242462 + ID2 SINE ID 3 119 -33 3 1367 189 74 0 0 chr11 102601800 102601827 -19242029 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1367 510 232 56 97 chr11 102601950 102602146 -19241710 - B3A SINE B2 0 198 11 3 1367 307 250 84 105 chr11 102602229 102602372 -19241484 + MT2B LTR ERVL 115 254 -347 3 1367 438 245 113 73 chr11 102602247 102602270 -19241586 + B4 SINE B4 68 96 -196 3 1367 647 212 71 28 chr11 102602270 102602411 -19241445 + B1_Mur3 SINE Alu 3 149 0 3 1367 266 305 30 40 chr11 102603827 102603926 -19239930 - PB1D9 SINE Alu 0 120 23 3 1367 375 23 0 0 chr11 102604313 102604357 -19239499 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1367 180 0 0 0 chr11 102604797 102604817 -19239039 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1367 1773 10 0 0 chr11 102605814 102606007 -19237849 + B2_Mm1a SINE B2 1 193 0 3 1367 695 218 35 0 chr11 102606364 102606506 -19237350 + B1F1 SINE Alu 1 147 -2 3 1367 952 89 16 0 chr11 102606539 102606663 -19237193 + B1_Mus1 SINE Alu 5 130 -18 3 1367 943 119 0 28 chr11 102606674 102606855 -19237001 + (GGA)n Simple_repeat Simple_repeat 3 178 0 3 1367 531 0 0 0 chr11 102606855 102606914 -19236942 + (GAA)n Simple_repeat Simple_repeat 2 60 0 3 1367 2716 48 42 3 chr11 102606975 102607308 -19236548 + ORR1A1 LTR MaLR 1 346 0 3 1367 12831 53 85 1 chr11 102607308 102608962 -19234894 + ORR1A1-int LTR MaLR 1 1792 0 3 1367 2542 52 40 3 chr11 102608962 102609288 -19234568 + ORR1A1 LTR MaLR 1 338 -8 3 1367 691 276 112 54 chr11 102610103 102610379 -19233477 + B4A SINE B4 1 292 0 3 1367 437 252 111 0 chr11 102610492 102610591 -19233265 + PB1D10 SINE Alu 1 110 -7 3 1367 237 146 0 0 chr11 102610740 102610788 -19233068 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 3 1367 405 39 0 0 chr11 102611092 102611143 -19232713 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 3 1367 305 259 61 12 chr11 102611143 102611225 -19232631 - PB1D10 SINE Alu -15 102 17 3 1367 262 299 117 27 chr11 102612143 102612340 -19231516 - L1MC LINE L1 -2057 5825 5574 3 1367 654 157 0 0 chr11 102612408 102612529 -19231327 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 1367 190 348 90 0 chr11 102612909 102612998 -19230858 - L2 LINE L2 -964 2455 2359 3 1367 207 100 0 0 chr11 102613005 102613035 -19230821 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 3 1367 573 88 0 0 chr11 102614769 102614849 -19229007 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 1367 602 265 191 29 chr11 102617487 102617728 -19226128 - B4 SINE B4 -8 284 5 3 1367 906 181 14 0 chr11 102617837 102617981 -19225875 + B1_Mur1 SINE Alu 4 149 0 3 1367 339 150 0 0 chr11 102617981 102618041 -19225815 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 3 1367 1499 47 5 30 chr11 102618227 102618425 -19225431 + B2_Mm1a SINE B2 1 193 0 3 1367 304 197 15 29 chr11 102618574 102618642 -19225214 - ID4 SINE ID -13 70 4 3 1367 198 0 0 0 chr11 102618829 102618851 -19225005 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1367 679 258 93 34 chr11 102618933 102619138 -19224718 + ID_B1 SINE B4 5 221 -3 3 1367 204 40 0 0 chr11 102619786 102619811 -19224045 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 3 1367 234 0 0 0 chr11 102619811 102619836 -19224020 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 1367 493 250 0 9 chr11 102619836 102619945 -19223911 - PB1D9 SINE Alu -12 108 1 3 1367 289 164 18 0 chr11 102619973 102620028 -19223828 - PB1D9 SINE Alu -1 119 64 3 1367 420 37 0 0 chr11 102622248 102622302 -19221554 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1367 23 0 0 0 chr11 102622723 102622746 -19221110 + GC_rich Low_complexity Low_complexity 1 23 0 3 1367 206 179 18 18 chr11 102622792 102622849 -19221007 + C-rich Low_complexity Low_complexity 4 60 0 3 1367 231 88 0 0 chr11 102622850 102622884 -19220972 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 3 1367 266 301 160 15 chr11 102625378 102625584 -19218272 - MIRc SINE MIR -29 239 2 3 1367 391 315 8 8 chr11 102627501 102627564 -19216292 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1367 1384 77 33 0 chr11 102627564 102627745 -19216111 - B2_Mm1t SINE B2 -5 188 2 3 1367 391 315 8 8 chr11 102627745 102627809 -19216047 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1367 601 199 12 0 chr11 102627822 102627993 -19215863 + (TG)n Simple_repeat Simple_repeat 2 174 0 3 1367 684 0 0 0 chr11 102628264 102628340 -19215516 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1368 362 250 104 22 chr11 102629761 102629896 -19213960 - ID_B1 SINE B4 0 224 79 3 1368 214 296 0 58 chr11 102631833 102631919 -19211937 - ID4 SINE ID -1 82 2 3 1368 238 250 211 31 chr11 102632368 102632496 -19211360 - MIRc SINE MIR -113 155 5 3 1368 207 0 0 0 chr11 102636937 102636960 -19206896 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 1368 243 224 0 49 chr11 102638741 102638802 -19205054 - MIR SINE MIR -100 108 51 3 1368 576 42 0 0 chr11 102639880 102639951 -19203905 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1368 298 213 0 96 chr11 102642576 102642587 -19201269 + ID_B1 SINE B4 150 185 -39 3 1368 389 131 0 0 chr11 102642587 102642650 -19201206 + B1F1 SINE Alu 81 143 -6 3 1368 827 66 207 0 chr11 102642685 102642806 -19201050 + B1_Mm SINE Alu 2 147 0 3 1368 467 33 16 0 chr11 102642806 102642867 -19200989 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 3 1368 1269 147 182 79 chr11 102643420 102643738 -19200118 - MTC LTR MaLR 0 419 69 3 1368 729 177 0 0 chr11 102643751 102643875 -19199981 - B1_Mus1 SINE Alu -1 147 24 3 1368 186 43 0 0 chr11 102645265 102645288 -19198568 + (CGGGG)n Simple_repeat Simple_repeat 1 23 0 3 1368 304 265 58 10 chr11 102645744 102645847 -19198009 + ID_B1 SINE B4 84 191 -33 3 1368 261 0 0 0 chr11 102645853 102645882 -19197974 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1368 961 138 0 7 chr11 102645906 102646052 -19197804 + B1_Mus1 SINE Alu 4 148 0 3 1368 309 26 0 0 chr11 102647252 102647290 -19196566 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1368 903 55 0 16 chr11 102647290 102647419 -19196437 - B1_Mm SINE Alu -20 127 1 3 1368 484 264 87 11 chr11 102647419 102647491 -19196365 - B4 SINE B4 -71 221 4 3 1368 1155 88 17 12 chr11 102647688 102647860 -19195996 + B2_Mm2 SINE B2 2 174 -21 3 1368 1107 51 0 74 chr11 102647860 102648009 -19195847 + B1_Mm SINE Alu 1 138 -9 3 1368 201 0 100 25 chr11 102648009 102648049 -19195807 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1368 429 204 96 17 chr11 102648284 102648399 -19195457 + B1F2 SINE Alu 26 149 0 3 1368 2779 63 3 0 chr11 102648457 102648807 -19195049 + L1Md_F2 LINE L1 6232 6582 0 3 1368 420 55 0 0 chr11 102648845 102648900 -19194956 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1368 253 250 0 0 chr11 102648958 102649010 -19194846 - RSINE1 SINE B4 -111 54 3 3 1368 829 266 86 123 chr11 102649090 102649396 -19194460 - L1MB2 LINE L1 -83 6088 5782 3 1368 774 227 122 56 chr11 102649396 102649666 -19194190 - B4 SINE B4 -4 288 1 3 1368 829 266 86 123 chr11 102649666 102649679 -19194177 - L1M3 LINE L1 -390 5781 5781 3 1368 610 249 70 22 chr11 102649679 102649864 -19193992 - B3A SINE B2 -4 194 1 4 1368 829 266 86 123 chr11 102649864 102650034 -19193822 - L1MB2 LINE L1 -390 5781 5616 3 1368 465 103 0 0 chr11 102650034 102650102 -19193754 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 4 1368 829 266 86 123 chr11 102650102 102650124 -19193732 - L1MB2 LINE L1 -556 5615 5594 3 1368 838 126 101 22 chr11 102650126 102650264 -19193592 - B1_Mur3 SINE Alu 0 149 1 4 1368 27 0 0 0 chr11 102650270 102650297 -19193559 + AT_rich Low_complexity Low_complexity 1 27 0 4 1368 533 276 3 1 chr11 102650551 102650687 -19193169 + B1F2 SINE Alu 4 141 -8 4 1368 1161 60 0 0 chr11 102650734 102650884 -19192972 + (CCA)n Simple_repeat Simple_repeat 2 151 0 4 1368 418 304 152 0 chr11 102650888 102651026 -19192830 + B3A SINE B2 4 162 -36 4 1368 243 274 142 58 chr11 102651029 102651219 -19192637 - RLTR25B LTR ERVK -383 645 440 4 1368 784 164 13 40 chr11 102651112 102651264 -19192592 - B1_Mus1 SINE Alu 0 148 1 4 1368 24 0 0 0 chr11 102651270 102651294 -19192562 + AT_rich Low_complexity Low_complexity 1 24 0 4 1368 267 238 143 2 chr11 102651720 102651819 -19192037 + PB1D7 SINE Alu 5 117 -3 4 1368 518 289 72 39 chr11 102651837 102652017 -19191839 + B3 SINE B2 16 201 -15 4 1368 224 197 0 53 chr11 102652053 102652084 -19191772 + A-rich Low_complexity Low_complexity 1 29 0 4 1368 837 194 14 7 chr11 102652084 102652229 -19191627 + B1_Mus1 SINE Alu 2 147 -1 4 1368 224 197 0 53 chr11 102652229 102652272 -19191584 + A-rich Low_complexity Low_complexity 30 71 0 4 1368 213 255 125 161 chr11 102652275 102652443 -19191413 + RSINE1 SINE B4 4 165 0 4 1368 739 277 82 46 chr11 102652499 102652758 -19191098 + B4A SINE B4 3 272 -20 4 1368 342 0 0 0 chr11 102652758 102652796 -19191060 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1368 739 277 82 46 chr11 102652796 102652816 -19191040 + B4A SINE B4 273 292 0 4 1368 329 280 90 36 chr11 102654190 102654301 -19189555 + PB1 SINE Alu 3 119 -8 4 1368 393 22 0 0 chr11 102654376 102654422 -19189434 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1368 753 152 71 14 chr11 102654528 102654668 -19189188 + B1_Mur3 SINE Alu 1 148 -1 4 1368 596 207 8 17 chr11 102654852 102654970 -19188886 + B1_Mur3 SINE Alu 22 138 -11 4 1368 595 303 155 0 chr11 102655131 102655382 -19188474 + B4A SINE B4 1 290 -2 4 1368 234 0 0 0 chr11 102656281 102656307 -19187549 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1368 664 156 20 1 chr11 102656408 102656554 -19187302 - B1_Mur3 SINE Alu 0 150 1 4 1368 1502 74 16 0 chr11 102656697 102656886 -19186970 + B2_Mm2 SINE B2 1 192 -3 4 1368 1160 75 0 7 chr11 102656892 102657040 -19186816 + B1_Mus1 SINE Alu 2 148 0 4 1368 219 292 54 143 chr11 102657488 102657511 -19186345 + PB1D7 SINE Alu 18 92 -28 4 1368 339 262 0 36 chr11 102657511 102657594 -19186262 + ID_B1 SINE B4 138 217 -7 4 1368 270 316 0 92 chr11 102657992 102658079 -19185777 - BC1_Mm scRNA scRNA -73 79 1 4 1368 1055 90 14 7 chr11 102658106 102658252 -19185604 - B1_Mus1 SINE Alu 0 148 2 4 1368 922 176 128 0 chr11 102658501 102658689 -19185167 - B3 SINE B2 -4 212 1 4 1368 1646 26 11 0 chr11 102659536 102659726 -19184130 - B2_Mm1a SINE B2 -1 192 1 4 1368 622 158 17 26 chr11 102659729 102659846 -19184010 - PB1D9 SINE Alu -2 118 3 4 1368 26 0 0 0 chr11 102660520 102660546 -19183310 + GC_rich Low_complexity Low_complexity 1 26 0 4 1368 701 213 22 0 chr11 102662983 102663119 -19180737 + B1_Mur2 SINE Alu 1 139 -10 4 1368 210 37 0 0 chr11 102663354 102663381 -19180475 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1368 1217 43 0 0 chr11 102663395 102663536 -19180320 + B1_Mus2 SINE Alu 2 142 -5 4 1368 1390 74 23 0 chr11 102663536 102663712 -19180144 - B2_Mm2 SINE B2 -14 181 2 4 1368 509 214 108 1 chr11 102663714 102663850 -19180006 - B1_Mur2 SINE Alu -1 148 1 4 1368 341 291 120 60 chr11 102663757 102663855 -19180001 - MT2B2 LTR ERVL -327 257 162 4 1368 303 287 46 9 chr11 102663855 102663964 -19179892 - PB1D10 SINE Alu 0 117 5 4 1368 341 291 120 60 chr11 102663964 102664048 -19179808 - MT2B2 LTR ERVL -423 161 64 4 1368 1006 211 33 9 chr11 102664467 102664678 -19179178 + B3 SINE B2 1 216 0 4 1368 430 222 8 79 chr11 102664717 102664844 -19179012 + PB1D9 SINE Alu 2 119 -1 4 1368 408 148 49 12 chr11 102665106 102665188 -19178668 + B1_Mur2 SINE Alu 65 149 0 4 1368 549 195 25 58 chr11 102665316 102665436 -19178420 + PB1D9 SINE Alu 5 120 0 4 1368 1088 222 0 18 chr11 102665663 102665883 -19177973 + B3 SINE B2 1 216 0 4 1368 282 130 31 25 chr11 102665885 102665967 -19177889 + B1_Mus2 SINE Alu 67 149 0 4 1368 473 154 118 0 chr11 102665982 102666092 -19177764 + B1_Mur1 SINE Alu 26 148 -1 4 1368 287 315 22 0 chr11 102666377 102666469 -19177387 - B3A SINE B2 -104 94 1 4 1368 580 261 124 5 chr11 102666726 102666911 -19176945 + ID_B1 SINE B4 2 208 -16 4 1368 452 203 25 132 chr11 102667203 102667362 -19176494 + B3 SINE B2 69 210 -6 4 1368 846 264 33 24 chr11 102667460 102667673 -19176183 + B3 SINE B2 2 216 0 4 1368 874 203 94 20 chr11 102667698 102667881 -19175975 + B3 SINE B2 33 206 -10 4 1368 1048 141 28 22 chr11 102667913 102668095 -19175761 + B2_Mm2 SINE B2 2 184 -11 4 1368 471 198 35 18 chr11 102668447 102668560 -19175296 - PB1D9 SINE Alu 0 120 6 4 1368 715 236 0 20 chr11 102668589 102668740 -19175116 - B1_Mus1 SINE Alu 0 148 1 4 1368 236 290 58 0 chr11 102669403 102669472 -19174384 + ID4 SINE ID 4 76 -7 4 1368 1130 15 7 0 chr11 102669540 102669676 -19174180 + (GGAGA)n Simple_repeat Simple_repeat 4 140 0 4 1368 207 0 0 0 chr11 102670116 102670139 -19173717 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 4 1368 980 221 11 11 chr11 102670146 102670329 -19173527 + B3 SINE B2 31 213 -3 4 1368 329 271 162 72 chr11 102670371 102670538 -19173318 + B3A SINE B2 11 192 -6 4 1368 343 286 47 0 chr11 102670557 102670656 -19173200 + PB1D10 SINE Alu 1 102 -15 4 1368 413 314 159 17 chr11 102670688 102670921 -19172935 + L1MEc LINE L1 108 373 -6027 4 1368 364 278 56 0 chr11 102670967 102671077 -19172779 + PB1D9 SINE Alu 5 119 -1 4 1368 1392 92 5 0 chr11 102671093 102671278 -19172578 - B2_Mm1t SINE B2 -7 186 1 4 1368 317 231 62 25 chr11 102671302 102671382 -19172474 - L1M4c LINE L1 -5209 1175 1093 4 1368 407 295 75 30 chr11 102671440 102671573 -19172283 - ID_B1 SINE B4 -83 141 3 4 1368 350 231 76 95 chr11 102673131 102673236 -19170620 - PB1D10 SINE Alu -10 107 5 4 1368 369 0 0 0 chr11 102673256 102673297 -19170559 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1368 189 0 0 0 chr11 102673297 102673317 -19170539 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 1368 715 229 93 5 chr11 102673323 102673516 -19170340 + B3 SINE B2 1 210 -6 4 1368 608 229 8 0 chr11 102673545 102673667 -19170189 + MTD LTR MaLR 227 349 -70 4 1368 289 278 93 0 chr11 102673688 102673785 -19170071 - PB1D10 SINE Alu -11 106 1 4 1368 1173 75 0 0 chr11 102673994 102674140 -19169716 - B1_Mus2 SINE Alu 0 147 2 4 1368 1085 162 6 0 chr11 102674223 102674396 -19169460 - B3 SINE B2 -5 211 38 4 1368 379 214 29 0 chr11 102674772 102674842 -19169014 + ID4 SINE ID 1 72 -11 4 1368 257 235 29 0 chr11 102674854 102674922 -19168934 - L1ME3A LINE L1 -40 6133 6064 4 1368 269 316 128 74 chr11 102674970 102675204 -19168652 + RSINE1 SINE B4 42 272 -20 4 1368 201 74 0 0 chr11 102675220 102675247 -19168609 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1368 461 244 78 9 chr11 102675325 102675441 -19168415 - ID_B1 SINE B4 -8 216 93 4 1368 231 320 51 0 chr11 102676124 102676202 -19167654 + B1F SINE Alu 41 122 -27 4 1368 941 93 132 7 chr11 102676196 102676347 -19167509 - B2_Mm2 SINE B2 -25 170 1 4 1368 586 79 0 0 chr11 102676349 102676425 -19167431 - ORR1C1 LTR MaLR -41 337 262 4 1368 629 174 8 17 chr11 102676464 102676581 -19167275 - PB1D9 SINE Alu 0 120 5 4 1368 220 280 91 26 chr11 102676676 102676753 -19167103 + B1_Mus1 SINE Alu 12 93 -55 4 1368 845 270 24 5 chr11 102677120 102677325 -19166531 - B3 SINE B2 -6 210 2 4 1368 270 177 145 0 chr11 102677486 102677548 -19166308 + ID4_ SINE ID 2 72 -11 4 1368 274 311 0 13 chr11 102677582 102677657 -19166199 + ID4_ SINE ID 2 75 -8 4 1368 298 261 39 108 chr11 102677665 102677794 -19166062 + PB1D9 SINE Alu 1 120 0 4 1368 433 308 57 28 chr11 102678438 102678615 -19165241 + ID_B1 SINE B4 40 221 -3 4 1368 21 0 0 0 chr11 102679721 102679742 -19164114 + AT_rich Low_complexity Low_complexity 1 21 0 4 1368 24 85 0 0 chr11 102680111 102680170 -19163686 + GC_rich Low_complexity Low_complexity 1 59 0 4 1368 22 0 0 0 chr11 102680197 102680219 -19163637 + GC_rich Low_complexity Low_complexity 1 22 0 4 1368 28 0 0 0 chr11 102680239 102680267 -19163589 + GC_rich Low_complexity Low_complexity 1 28 0 4 1368 21 57 0 0 chr11 102680314 102680349 -19163507 + GC_rich Low_complexity Low_complexity 1 35 0 4 1368 215 61 30 0 chr11 102680376 102680409 -19163447 + (CCG)n Simple_repeat Simple_repeat 2 35 0 4 1368 29 28 0 0 chr11 102680595 102680631 -19163225 + GC_rich Low_complexity Low_complexity 1 36 0 4 1368 471 275 67 62 chr11 102681164 102681358 -19162498 + B3A SINE B2 4 198 0 4 1368 180 0 0 0 chr11 102681659 102681679 -19162177 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1368 189 0 0 0 chr11 102681705 102681726 -19162130 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1368 445 294 55 14 chr11 102681796 102681941 -19161915 - ID_B1 SINE B4 -4 220 70 5 1368 533 246 96 15 chr11 102681966 102682102 -19161754 - B1_Mur2 SINE Alu -1 148 2 5 1368 258 242 65 0 chr11 102682333 102682395 -19161461 + ID4 SINE ID 1 66 -17 5 1368 285 260 110 0 chr11 102682442 102682596 -19161260 + L1ME3A LINE L1 5653 5823 -350 5 1368 313 319 54 0 chr11 102682626 102682792 -19161064 + L1ME3A LINE L1 5915 6089 -84 5 1368 374 212 38 0 chr11 102682825 102682905 -19160951 - ID4 SINE ID 0 83 1 5 1368 302 98 20 0 chr11 102682921 102682972 -19160884 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1368 236 229 83 0 chr11 102682972 102683020 -19160836 - B4A SINE B4 -20 272 221 5 1368 777 135 0 0 chr11 102683020 102683146 -19160710 + (TA)n Simple_repeat Simple_repeat 2 127 0 5 1368 1258 41 0 0 chr11 102683159 102683306 -19160550 - B1_Mus2 SINE Alu 0 147 1 5 1368 759 258 41 111 chr11 102683306 102683386 -19160470 - B4A SINE B4 -62 230 147 5 1368 2291 115 12 0 chr11 102683386 102683707 -19160149 - ORR1A3 LTR MaLR -1 325 1 5 1368 759 258 41 111 chr11 102683707 102683754 -19160102 - B4A SINE B4 -146 146 97 5 1368 719 210 58 0 chr11 102683754 102683892 -19159964 + B1_Mur3 SINE Alu 1 146 -3 5 1368 759 258 41 111 chr11 102683892 102684007 -19159849 - B4A SINE B4 -196 96 4 5 1368 642 259 36 91 chr11 102684041 102684262 -19159594 + B3 SINE B2 8 216 0 5 1368 288 245 213 0 chr11 102684334 102684428 -19159428 + RSINE1 SINE B4 21 134 -31 5 1368 326 349 27 9 chr11 102684498 102684608 -19159248 - PB1D7 SINE Alu -8 112 1 5 1368 473 167 0 20 chr11 102684638 102684736 -19159120 + CT-rich Low_complexity Low_complexity 1 96 0 5 1368 281 175 35 59 chr11 102684736 102684821 -19159035 - B1F1 SINE Alu 0 149 67 5 1368 480 272 0 9 chr11 102684794 102684909 -19158947 - B1_Mur2 SINE Alu -27 122 9 5 1368 336 211 211 0 chr11 102685301 102685377 -19158479 + ORR1C1 LTR MaLR 3 94 -325 5 1368 363 127 141 0 chr11 102685376 102685447 -19158409 + PB1D9 SINE Alu 40 120 0 5 1368 233 184 0 0 chr11 102685460 102685498 -19158358 + B3 SINE B2 3 40 -176 5 1368 575 92 0 0 chr11 102685496 102685572 -19158284 + ORR1C1 LTR MaLR 262 337 -41 5 1368 1402 54 43 21 chr11 102685574 102685762 -19158094 + B2_Mm2 SINE B2 1 192 -3 5 1368 517 157 22 0 chr11 102685772 102685861 -19157995 + B1_Mur4 SINE Alu 1 91 -59 5 1368 563 172 78 0 chr11 102685851 102685967 -19157889 + ORR1C1 LTR MaLR 295 419 0 5 1368 668 166 0 9 chr11 102685974 102686208 -19157648 + (TG)n Simple_repeat Simple_repeat 1 231 0 5 1368 369 176 13 26 chr11 102686241 102686317 -19157539 - HAL1-3A_ME LINE L1 -831 2027 1953 5 1368 494 324 7 34 chr11 102686415 102686562 -19157294 - RSINE1 SINE B4 -22 143 1 5 1368 666 264 126 10 chr11 102686582 102686781 -19157075 - ID_B1 SINE B4 -1 223 2 5 1368 274 316 122 0 chr11 102686790 102686888 -19156968 - PB1D10 SINE Alu -7 110 1 5 1368 724 236 86 15 chr11 102687101 102687299 -19156557 + B3 SINE B2 5 216 0 5 1368 656 223 74 20 chr11 102687308 102687484 -19156372 + B3 SINE B2 3 186 -9 5 1368 1042 128 6 13 chr11 102687541 102687699 -19156157 + B2_Mm2 SINE B2 2 158 -37 5 1368 315 0 0 0 chr11 102687700 102687735 -19156121 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1368 816 213 0 28 chr11 102687752 102687897 -19155959 + B1_Mur3 SINE Alu 1 141 -8 5 1368 629 230 21 14 chr11 102687957 102688098 -19155758 + B1_Mur2 SINE Alu 1 142 -7 5 1368 1388 6 6 0 chr11 102688253 102688414 -19155442 + (GAA)n Simple_repeat Simple_repeat 1 162 0 5 1368 223 301 19 37 chr11 102689153 102689260 -19154596 - MIRc SINE MIR -137 131 27 5 1368 183 342 89 0 chr11 102689198 102689277 -19154579 + MIRm SINE MIR 42 127 -149 5 1368 852 239 43 0 chr11 102689383 102689571 -19154285 + B3 SINE B2 2 197 -19 5 1368 1174 56 14 0 chr11 102689587 102689729 -19154127 + B1_Mur4 SINE Alu 1 144 -6 5 1368 189 0 0 0 chr11 102689730 102689751 -19154105 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 5 1368 23 33 0 0 chr11 102689800 102689830 -19154026 + AT_rich Low_complexity Low_complexity 1 30 0 5 1368 660 160 12 5 chr11 102689830 102689964 -19153892 + B2_Mm2 SINE B2 1 137 -61 5 1368 872 200 36 36 chr11 102690002 102690190 -19153666 - B3 SINE B2 0 216 29 5 1368 4385 144 99 69 chr11 102690190 102691054 -19152802 + RMER19B LTR ERVK 1 890 -12 5 1368 320 299 82 0 chr11 102691605 102691702 -19152154 - PB1 SINE Alu -22 105 1 5 1368 813 94 8 20 chr11 102691902 102692029 -19151827 - B2_Mm2 SINE B2 -62 131 1 5 1368 318 148 0 0 chr11 102692034 102692088 -19151768 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 5 1368 693 142 18 9 chr11 102692098 102692212 -19151644 - B1F2 SINE Alu 0 149 35 5 1368 241 278 28 83 chr11 102692117 102692262 -19151594 - RLTR25B LTR ERVK -508 520 384 5 1368 203 238 29 200 chr11 102693367 102693438 -19150418 + MIRm SINE MIR 67 121 -155 5 1368 914 162 7 26 chr11 102693438 102693590 -19150266 - B1_Mur3 SINE Alu 0 149 1 5 1368 203 238 29 200 chr11 102693590 102693623 -19150233 + MIRm SINE MIR 122 153 -123 5 1368 250 149 29 6 chr11 102693592 102693650 -19150206 + MIRc SINE MIR 119 180 -88 5 1368 1655 159 40 29 chr11 102693687 102694036 -19149820 + RMER1B Other Other 713 1065 -1 5 1368 576 217 47 0 chr11 102694599 102694728 -19149128 + B1_Mm SINE Alu 12 146 -1 5 1368 312 270 77 22 chr11 102694737 102694828 -19149028 + RSINE1 SINE B4 10 105 -60 5 1368 305 158 53 0 chr11 102694938 102694995 -19148861 + B1_Mur1 SINE Alu 83 142 -7 5 1368 476 349 54 0 chr11 102695001 102695167 -19148689 - B3A SINE B2 -4 194 20 5 1368 225 221 147 0 chr11 102695106 102695174 -19148682 - B4A SINE B4 -211 81 4 5 1368 735 270 49 0 chr11 102695182 102695386 -19148470 - B3 SINE B2 -1 215 2 5 1368 207 162 0 0 chr11 102695539 102695576 -19148280 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1368 277 325 47 23 chr11 102695936 102696065 -19147791 + MIRb SINE MIR 35 166 -102 5 1368 710 182 104 15 chr11 102696152 102696286 -19147570 + B1_Mur1 SINE Alu 2 147 -2 5 1368 780 153 24 0 chr11 102696406 102696530 -19147326 - B1_Mur4 SINE Alu -21 129 3 5 1368 455 220 45 27 chr11 102696531 102696643 -19147213 - PB1D9 SINE Alu -1 119 6 5 1368 449 246 76 8 chr11 102696643 102696762 -19147094 - B1F SINE Alu -3 146 20 5 1368 676 36 26 18 chr11 102696987 102697101 -19146755 + (TG)n Simple_repeat Simple_repeat 1 115 0 5 1368 268 203 94 0 chr11 102698926 102698990 -19144866 + MIRm SINE MIR 76 145 -131 5 1368 1162 83 0 0 chr11 102701958 102702102 -19141754 + B1_Mus2 SINE Alu 2 145 -2 5 1368 324 70 0 0 chr11 102702115 102702158 -19141698 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1368 703 241 99 26 chr11 102703211 102703403 -19140453 - B3 SINE B2 -5 211 6 5 1368 975 94 0 32 chr11 102703634 102703820 -19140036 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1368 590 259 13 39 chr11 102703954 102704107 -19139749 - B1F2 SINE Alu 0 149 1 5 1368 445 221 41 74 chr11 102704123 102704245 -19139611 - PB1D9 SINE Alu -2 118 1 5 1368 608 213 72 50 chr11 102704245 102704399 -19139457 - ID_B1 SINE B4 -71 221 65 5 1368 213 237 33 33 chr11 102704506 102704567 -19139289 + B1F SINE Alu 89 149 0 5 1368 332 321 60 87 chr11 102705791 102705817 -19138039 + B1F SINE Alu 1 26 -123 5 1368 2243 135 65 16 chr11 102705817 102706202 -19137654 + MTB_Mm LTR MaLR 4 407 0 5 1368 332 321 60 87 chr11 102706202 102706325 -19137531 + B1F SINE Alu 27 146 -3 5 1368 1304 72 49 11 chr11 102706643 102706827 -19137029 - B2_Mm2 SINE B2 -3 192 2 5 1368 1012 213 29 10 chr11 102706846 102707050 -19136806 - B3 SINE B2 -8 208 1 5 1368 283 269 52 31 chr11 102707075 102707171 -19136685 - PB1D7 SINE Alu -22 98 1 5 1368 204 286 141 13 chr11 102708051 102708129 -19135727 - L2b LINE L2 -4 3371 3284 5 1368 489 235 10 0 chr11 102708251 102708353 -19135503 + B1_Mur4 SINE Alu 48 150 0 5 1368 1158 187 5 14 chr11 102708701 102708913 -19134943 + B3 SINE B2 7 216 0 5 1368 213 39 0 0 chr11 102709915 102709941 -19133915 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 5 1368 1125 56 21 14 chr11 102710809 102710953 -19132903 - B1_Mus1 SINE Alu -2 146 2 5 1368 2044 69 92 7 chr11 102711029 102711322 -19132534 + ORR1A2 LTR MaLR 1 318 -9 5 1368 839 151 20 48 chr11 102711766 102711912 -19131944 - B1_Mur2 SINE Alu -7 142 1 5 1368 375 289 114 0 chr11 102711922 102712036 -19131820 - B1F SINE Alu -13 136 10 5 1368 212 348 80 0 chr11 102712047 102712145 -19131711 - MIRc SINE MIR -115 153 47 5 1368 707 214 20 7 chr11 102712145 102712291 -19131565 + B1_Mur1 SINE Alu 2 149 0 5 1368 212 348 80 0 chr11 102712291 102712304 -19131552 - MIRc SINE MIR -222 46 34 5 1368 583 299 130 65 chr11 102712389 102712665 -19131191 + ORR1E LTR MaLR 56 349 -10 5 1368 187 321 0 18 chr11 102713523 102713580 -19130276 - L3b LINE CR1 -123 359 304 5 1368 210 71 0 0 chr11 102713903 102713931 -19129925 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 5 1368 370 256 40 74 chr11 102714073 102714221 -19129635 - B1F SINE Alu -2 147 5 5 1368 241 250 170 57 chr11 102714324 102714430 -19129426 - PB1 SINE Alu -8 119 2 5 1368 421 254 0 0 chr11 102714582 102714653 -19129203 + B1_Mur3 SINE Alu 1 71 -78 5 1368 1329 103 5 30 chr11 102714681 102714881 -19128975 - B2_Mm2 SINE B2 0 195 1 5 1368 332 215 15 15 chr11 102714898 102714964 -19128892 - B3A SINE B2 -132 66 1 5 1368 610 200 189 56 chr11 102714964 102715160 -19128696 - ID_B1 SINE B4 -2 222 1 5 1368 595 256 17 25 chr11 102715176 102715343 -19128513 - B3 SINE B2 0 216 49 5 1368 407 245 9 73 chr11 102715358 102715468 -19128388 - B3A SINE B2 -94 104 2 5 1368 555 186 123 9 chr11 102715485 102715599 -19128257 - B1_Mur2 SINE Alu -7 142 16 6 1368 347 176 68 128 chr11 102715504 102715621 -19128235 - MT2B LTR ERVL -337 264 155 6 1368 801 10 0 0 chr11 102715626 102715727 -19128129 - L1Md_T LINE L1 0 6582 6482 6 1368 754 246 100 54 chr11 102715756 102716035 -19127821 + B4A SINE B4 1 292 0 6 1368 219 69 0 0 chr11 102717037 102717066 -19126790 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1368 419 250 57 16 chr11 102717066 102717188 -19126668 - B1F2 SINE Alu -22 127 1 6 1368 259 248 93 76 chr11 102717084 102717202 -19126654 - B4 SINE B4 -94 198 79 6 1368 1130 120 18 0 chr11 102717609 102717776 -19126080 - B2_Mm2 SINE B2 -25 170 1 6 1368 826 229 93 0 chr11 102717782 102717987 -19125869 - ID_B1 SINE B4 0 224 1 6 1368 408 287 29 19 chr11 102718118 102718221 -19125635 + PB1D10 SINE Alu 13 116 -1 6 1368 343 279 76 0 chr11 102718520 102718599 -19125257 - PB1D10 SINE Alu -29 88 4 6 1368 349 138 24 48 chr11 102719049 102719133 -19124723 + L1_Mus2 LINE L1 6485 6566 0 6 1368 726 168 104 0 chr11 102719800 102719925 -19123931 - B3 SINE B2 -28 188 51 6 1368 188 67 33 0 chr11 102720181 102720211 -19123645 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 6 1368 504 236 45 0 chr11 102720727 102720837 -19123019 - PB1D9 SINE Alu -5 115 1 6 1368 529 309 21 69 chr11 102720874 102721062 -19122794 + B3A SINE B2 2 180 -18 6 1368 664 250 89 0 chr11 102721863 102722031 -19121825 + ID_B1 SINE B4 29 211 -13 6 1368 500 250 106 91 chr11 102722207 102722230 -19121626 - ID_B1 SINE B4 -51 241 198 6 1368 745 131 107 0 chr11 102722230 102722352 -19121504 - B1_Mur4 SINE Alu -7 143 9 6 1368 500 250 106 91 chr11 102722352 102722446 -19121410 - ID_B1 SINE B4 -51 197 8 6 1368 956 131 0 0 chr11 102722468 102722613 -19121243 + B2_Mm2 SINE B2 2 146 -49 6 1368 928 32 16 0 chr11 102722612 102722736 -19121120 + B1_Mus1 SINE Alu 22 147 -1 6 1368 229 218 0 0 chr11 102722762 102722817 -19121039 + PB1D10 SINE Alu 3 57 -60 6 1368 224 227 0 83 chr11 102722817 102722831 -19121025 + ID_B1 SINE B4 84 146 -78 6 1368 232 329 99 33 chr11 102722959 102723110 -19120746 - RSINE1 SINE B4 -4 161 1 6 1368 445 252 56 0 chr11 102723111 102723218 -19120638 - PB1D7 SINE Alu -3 117 5 6 1368 511 256 83 25 chr11 102723415 102723619 -19120237 + B3 SINE B2 1 216 0 6 1368 328 297 76 23 chr11 102724573 102724704 -19119152 - L1M5 LINE L1 -2936 3210 3073 6 1368 279 281 89 11 chr11 102724715 102724805 -19119051 - PB1D7 SINE Alu -2 118 22 6 1368 565 247 51 13 chr11 102724890 102725046 -19118810 + L1MC4 LINE L1 6708 6869 -1173 6 1368 371 311 28 9 chr11 102725151 102725258 -19118598 + PB1D9 SINE Alu 2 110 -10 6 1368 814 137 0 0 chr11 102725276 102725400 -19118456 - B1_Mus1 SINE Alu 0 148 25 6 1368 461 294 45 13 chr11 102725442 102725597 -19118259 - RSINE1 SINE B4 -4 161 2 6 1368 288 0 0 0 chr11 102727133 102727165 -19116691 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1368 585 128 154 0 chr11 102727181 102727298 -19116558 - B1_Mur3 SINE Alu 0 149 15 6 1368 314 305 12 0 chr11 102727307 102727389 -19116467 - ID4_ SINE ID 0 83 1 6 1368 272 233 0 22 chr11 102727472 102727554 -19116302 - PB1 SINE Alu -5 144 70 6 1368 358 181 37 45 chr11 102727528 102727643 -19116213 - PB1D9 SINE Alu -29 118 7 6 1368 254 280 35 115 chr11 102727555 102727668 -19116188 - MT2B LTR ERVL -348 253 150 6 1368 210 37 0 0 chr11 102727899 102727926 -19115930 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1368 1255 50 0 0 chr11 102727926 102728087 -19115769 - B2_Mm2 SINE B2 -33 162 2 6 1368 670 194 29 29 chr11 102728158 102728296 -19115560 + B1_Mur2 SINE Alu 1 138 -11 6 1368 681 142 0 0 chr11 102728316 102728429 -19115427 + (GA)n Simple_repeat Simple_repeat 2 114 0 6 1368 230 294 133 29 chr11 102730938 102731043 -19112813 + PB1D10 SINE Alu 1 116 -1 6 1368 902 172 58 48 chr11 102731970 102732159 -19111697 - B3 SINE B2 -25 191 1 6 1368 229 154 0 0 chr11 102733014 102733053 -19110803 - MTD LTR MaLR 0 419 381 6 1368 575 258 176 18 chr11 102733166 102733387 -19110469 - B4 SINE B4 -6 286 31 6 1368 1203 27 0 7 chr11 102733444 102733592 -19110264 - B1_Mus2 SINE Alu 0 147 1 6 1368 242 301 124 0 chr11 102733732 102733845 -19110011 - L2 LINE L2 -672 2747 2621 6 1368 295 322 268 8 chr11 102735070 102735599 -19108257 - L2 LINE L2 -935 2484 1818 6 1368 219 351 0 0 chr11 102735599 102735656 -19108200 - ID SINE ID -139 85 29 6 1368 276 250 15 0 chr11 102735657 102735725 -19108131 - PB1D10 SINE Alu 0 117 49 6 1368 225 0 0 0 chr11 102735754 102735779 -19108077 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 1368 581 134 0 30 chr11 102735779 102735871 -19107985 - B1_Mur4 SINE Alu -13 137 46 6 1368 385 238 193 28 chr11 102735908 102736120 -19107736 - L2 LINE L2 -1632 1787 1541 6 1368 253 329 0 0 chr11 102736200 102736270 -19107586 - L3 LINE CR1 -550 3939 3870 6 1368 372 250 143 0 chr11 102736642 102736754 -19107102 - B1_Mur1 SINE Alu -21 128 1 6 1368 889 104 44 0 chr11 102737032 102737167 -19106689 - B1_Mus1 SINE Alu -5 143 3 6 1368 231 374 0 44 chr11 102737188 102737325 -19106531 - BC1_Mm scRNA scRNA -16 136 6 6 1368 1293 95 21 0 chr11 102737529 102737718 -19106138 + B2_Mm2 SINE B2 1 193 -2 6 1368 407 275 71 61 chr11 102737984 102738214 -19105642 + MTEb LTR MaLR 123 378 -1 6 1368 22 35 0 0 chr11 102738220 102738249 -19105607 + AT_rich Low_complexity Low_complexity 1 29 0 6 1368 433 192 170 37 chr11 102738258 102738393 -19105463 - ID_B1 SINE B4 -1 223 71 6 1368 306 240 52 0 chr11 102738725 102738821 -19105035 + PB1D9 SINE Alu 12 112 -8 6 1368 229 242 110 59 chr11 102739229 102739251 -19104605 + YREP_Mm Unknown Unknown 182 270 -1542 6 1368 433 252 39 0 chr11 102739251 102739354 -19104502 - ID_B1 SINE B4 -40 184 78 6 1368 229 242 110 59 chr11 102739354 102739365 -19104491 + YREP_Mm Unknown Unknown 271 324 -1488 6 1368 900 227 63 19 chr11 102739370 102739577 -19104279 - B3 SINE B2 0 216 1 6 1368 261 200 25 51 chr11 102739584 102739663 -19104193 - PB1D10 SINE Alu -1 116 40 6 1368 279 0 0 0 chr11 102739737 102739768 -19104088 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1368 240 300 38 0 chr11 102740140 102740220 -19103636 - L1MC4 LINE L1 -625 7417 7335 6 1368 296 294 0 19 chr11 102740228 102740333 -19103523 + B3 SINE B2 22 120 -73 6 1368 317 321 27 33 chr11 102740642 102740800 -19103056 + B4A SINE B4 20 174 -118 6 1368 201 108 0 0 chr11 102740890 102740927 -19102929 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1368 237 250 58 14 chr11 102741439 102741508 -19102348 - ID2 SINE ID -9 74 3 6 1368 182 250 54 0 chr11 102741587 102741643 -19102213 + MIR SINE MIR 195 253 -9 6 1368 208 303 0 0 chr11 102743330 102743396 -19100460 + CT-rich Low_complexity Low_complexity 2 67 0 6 1368 233 273 30 15 chr11 102743513 102743580 -19100276 - ID SINE ID -139 85 18 6 1368 196 393 61 14 chr11 102744062 102744209 -19099647 + MIRb SINE MIR 26 179 -89 6 1368 357 24 0 0 chr11 102744631 102744673 -19099183 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1368 192 264 56 22 chr11 102745001 102745090 -19098766 + MIRc SINE MIR 112 203 -65 6 1368 1139 180 5 19 chr11 102745660 102745870 -19097986 - B3 SINE B2 -9 207 1 6 1368 234 0 0 0 chr11 102746328 102746354 -19097502 + (CAGGG)n Simple_repeat Simple_repeat 3 28 0 6 1368 297 0 0 0 chr11 102748233 102748266 -19095590 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1368 984 97 6 13 chr11 102750212 102750369 -19093487 + B2_Mm2 SINE B2 2 157 -38 6 1368 360 0 0 0 chr11 102750371 102750411 -19093445 + (TAA)n Simple_repeat Simple_repeat 2 41 0 6 1368 306 307 8 50 chr11 102751087 102751207 -19092649 + MIRb SINE MIR 122 236 -32 6 1368 537 16 0 0 chr11 102752852 102752914 -19090942 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1368 504 111 0 0 chr11 102753371 102753461 -19090395 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 1368 270 0 0 0 chr11 102753467 102753497 -19090359 + (TTC)n Simple_repeat Simple_repeat 3 32 0 6 1368 429 99 24 12 chr11 102753494 102753576 -19090280 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 1368 601 216 9 0 chr11 102753589 102753705 -19090151 - B1_Mur1 SINE Alu -20 129 13 6 1368 224 59 0 29 chr11 102753790 102753825 -19090031 + (CATATA)n Simple_repeat Simple_repeat 5 38 0 6 1368 244 282 36 60 chr11 102753829 102753912 -19089944 - B3A SINE B2 -61 137 57 6 1368 197 261 0 0 chr11 102755434 102755480 -19088376 + MIR SINE MIR 65 110 -152 6 1368 242 279 44 44 chr11 102756016 102756106 -19087750 + MT2B LTR ERVL 167 256 -345 6 1368 548 215 28 0 chr11 102756042 102756149 -19087707 + B1_Mur1 SINE Alu 40 149 0 6 1368 360 269 9 44 chr11 102756317 102756430 -19087426 - ID_B1 SINE B4 -17 207 99 6 1368 248 256 37 37 chr11 102756447 102756528 -19087328 + MIR SINE MIR 74 154 -108 6 1368 570 296 129 26 chr11 102758688 102758952 -19084904 + B4 SINE B4 2 292 0 6 21 247 284 202 0 chr11 102760359 102760468 -19083388 - B1_Mur2 SINE Alu -10 139 9 6 1369 1999 121 58 44 chr11 102760685 102761166 -19082690 - MT2B2 LTR ERVL 0 475 1 6 1369 337 315 111 18 chr11 102761507 102761678 -19082178 - L1MC4a LINE L1 -1952 5930 5744 6 1369 204 258 44 29 chr11 102762484 102762552 -19081304 + MIRb SINE MIR 117 185 -83 6 1369 810 223 51 46 chr11 102762865 102763081 -19080775 - ID_B1 SINE B4 -7 217 1 7 1369 1205 115 10 16 chr11 102763404 102763598 -19080258 - B2_Mm1t SINE B2 0 193 1 7 1369 555 210 40 12 chr11 102764173 102764334 -19079522 + B3 SINE B2 22 197 -1 7 1369 512 224 2 10 chr11 102764436 102764559 -19079297 + B1_Mur2 SINE Alu 1 147 -2 7 1369 187 211 52 17 chr11 102765478 102765536 -19078320 + MIRc SINE MIR 160 219 -49 7 1369 333 324 14 28 chr11 102765993 102766136 -19077720 - MamRep434 DNA TcMar -212 214 74 7 1369 306 0 0 0 chr11 102766399 102766433 -19077423 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1369 282 250 13 13 chr11 102766452 102766529 -19077327 - RSINE1 SINE B4 -86 79 3 7 1369 226 118 0 0 chr11 102766630 102766664 -19077192 - ID4_ SINE ID -38 45 12 7 1369 383 267 0 11 chr11 102766696 102766787 -19077069 - PB1D10 SINE Alu -27 90 1 7 1369 285 169 0 0 chr11 102766891 102766950 -19076906 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1369 911 141 0 0 chr11 102768884 102769026 -19074830 - B1_Mur2 SINE Alu 0 149 8 7 1369 496 268 36 7 chr11 102770776 102770915 -19072941 - ID_B1 SINE B4 -19 205 63 7 1369 836 111 14 49 chr11 102771107 102771249 -19072607 - B1_Mur3 SINE Alu -2 147 11 7 1369 355 229 9 143 chr11 102771150 102771262 -19072594 - MT2B LTR ERVL -344 257 161 7 1369 420 218 79 0 chr11 102771269 102771370 -19072486 - PB1D9 SINE Alu -10 110 2 7 1369 223 200 0 0 chr11 102771859 102771904 -19071952 + L4 LINE RTE 1981 2025 -4 7 1369 287 224 17 0 chr11 102772110 102772168 -19071688 + Charlie15a DNA MER1_type 123 181 -43 7 1369 673 156 23 8 chr11 102772167 102772296 -19071560 + B1_Mur4 SINE Alu 20 150 0 7 1369 363 154 0 0 chr11 102772318 102772383 -19071473 + A-rich Low_complexity Low_complexity 1 65 0 7 1369 689 106 130 0 chr11 102773418 102773541 -19070315 + B1_Mus2 SINE Alu 9 147 0 7 1369 572 289 25 19 chr11 102773846 102774008 -19069848 + RSINE1 SINE B4 3 165 0 7 1369 210 71 0 0 chr11 102774188 102774216 -19069640 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1369 315 292 0 14 chr11 102778078 102778151 -19065705 + RSINE1 SINE B4 3 74 -91 7 1369 1156 68 0 0 chr11 102778271 102778419 -19065437 + B1_Mus1 SINE Alu 1 148 0 7 1369 300 155 0 0 chr11 102778419 102778490 -19065366 + A-rich Low_complexity Low_complexity 1 71 0 7 1369 342 316 0 10 chr11 102778623 102778719 -19065137 + PB1D10 SINE Alu 23 117 0 7 1369 1148 55 0 0 chr11 102778730 102778876 -19064980 + B1_Mus2 SINE Alu 2 147 0 7 1369 228 273 0 18 chr11 102778877 102778933 -19064923 + ID4 SINE ID 26 80 -3 7 1369 1351 81 0 5 chr11 102778966 102779153 -19064703 + B2_Mm2 SINE B2 3 188 -7 7 1369 440 246 35 0 chr11 102779234 102779348 -19064508 + PB1D9 SINE Alu 3 120 0 7 1369 399 300 89 16 chr11 102779476 102779621 -19064235 - B2_Mm2 SINE B2 -26 167 4 7 1369 573 191 0 50 chr11 102779840 102779961 -19063895 - ID_B1 SINE B4 -1 223 109 7 1369 349 274 0 117 chr11 102780056 102780184 -19063672 - ID_B1 SINE B4 -6 218 106 7 1369 450 280 33 47 chr11 102780242 102780392 -19063464 - ID_B1 SINE B4 0 224 77 7 1369 254 308 43 104 chr11 102780251 102780414 -19063442 - MT2B LTR ERVL -316 285 133 7 1369 531 244 0 64 chr11 102780415 102780555 -19063301 + B1_Mur2 SINE Alu 19 149 0 7 1369 471 331 33 80 chr11 102780860 102780970 -19062886 - L1M5 LINE L1 -1459 4687 4592 7 1369 1091 68 0 7 chr11 102780970 102781117 -19062739 - B1_Mus2 SINE Alu 0 147 2 7 1369 471 331 33 80 chr11 102781117 102781522 -19062334 - L1M5 LINE L1 -1555 4591 4196 7 1369 1255 101 5 26 chr11 102781710 102781904 -19061952 - B2_Mm1t SINE B2 -2 191 2 7 1369 796 296 19 23 chr11 102782328 102782587 -19061269 - MIR SINE MIR -4 258 1 7 1369 327 242 143 0 chr11 102784229 102784320 -19059536 - PB1D10 SINE Alu -5 112 9 7 1369 216 316 0 38 chr11 102784253 102784332 -19059524 - B4A SINE B4 -132 160 85 7 1369 277 309 45 18 chr11 102784343 102784455 -19059401 - L1M5 LINE L1 -1971 4175 4061 7 1369 233 225 41 27 chr11 102784853 102784926 -19058930 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 7 1369 324 0 0 0 chr11 102785033 102785069 -19058787 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1369 226 199 60 66 chr11 102785072 102785150 -19058706 - B1_Mus1 SINE Alu -8 112 26 7 1369 200 264 40 90 chr11 102785541 102785641 -19058215 + MIR SINE MIR 96 190 -72 7 1369 517 224 24 8 chr11 102786745 102786871 -19056985 + B1_Mur1 SINE Alu 12 139 -10 7 1369 217 0 61 0 chr11 102787189 102787222 -19056634 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1369 1211 66 60 0 chr11 102787323 102787490 -19056366 - B2_Mm2 SINE B2 -18 177 1 7 1369 25 0 0 0 chr11 102787529 102787554 -19056302 + AT_rich Low_complexity Low_complexity 1 25 0 7 1369 268 322 22 54 chr11 102787727 102787819 -19056037 + B1F SINE Alu 45 133 -16 7 1369 1909 121 15 51 chr11 102787902 102788183 -19055673 + ORR1A2 LTR MaLR 1 286 -41 7 1369 943 38 104 15 chr11 102788183 102788318 -19055538 + B1_Mus2 SINE Alu 1 147 0 7 1369 1300 76 43 0 chr11 102788323 102788507 -19055349 + B2_Mm1a SINE B2 1 192 -1 7 1369 1909 121 15 51 chr11 102788507 102788550 -19055306 + ORR1A2 LTR MaLR 287 319 -8 7 1369 9673 128 86 21 chr11 102788554 102789509 -19054347 + ORR1A2-int LTR MaLR 1 1022 -941 7 1369 1541 22 0 21 chr11 102789509 102789698 -19054158 + B2_Mm1a SINE B2 1 185 -8 7 1369 9673 128 86 21 chr11 102789698 102790586 -19053270 + ORR1A2-int LTR MaLR 1023 1963 0 7 1369 2238 74 58 0 chr11 102790586 102790895 -19052961 + ORR1A2 LTR MaLR 1 327 0 7 1369 28 0 0 0 chr11 102790985 102791013 -19052843 + AT_rich Low_complexity Low_complexity 1 28 0 7 1369 849 224 0 38 chr11 102791068 102791254 -19052602 + B3A SINE B2 4 182 -16 7 1369 533 158 254 0 chr11 102791287 102791401 -19052455 + B1_Mur2 SINE Alu 1 143 -6 7 1369 21 0 0 0 chr11 102791411 102791432 -19052424 + AT_rich Low_complexity Low_complexity 1 21 0 7 1369 415 218 0 0 chr11 102791438 102791516 -19052340 + ID2 SINE ID 2 79 -4 7 1369 444 19 0 0 chr11 102791545 102791598 -19052258 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1369 426 277 76 0 chr11 102791616 102791735 -19052121 + RSINE1 SINE B4 4 131 -34 7 1369 1507 260 120 41 chr11 102791742 102792337 -19051519 + RMER19A LTR ERVK 1 733 -4 7 1369 271 329 0 0 chr11 102792605 102792681 -19051175 - ID4 SINE ID 0 83 8 7 1369 508 191 9 11 chr11 102792792 102792934 -19050922 + B3 SINE B2 65 194 -1 7 1369 361 268 0 0 chr11 102792988 102793070 -19050786 - ID4 SINE ID 0 83 2 7 1369 297 313 34 17 chr11 102793082 102793199 -19050657 - B1F SINE Alu -20 129 11 7 1369 252 170 0 0 chr11 102793291 102793344 -19050512 + T-rich Low_complexity Low_complexity 1 53 0 7 1369 1229 20 0 0 chr11 102793351 102793498 -19050358 - B1_Mm SINE Alu 0 147 1 7 1369 2559 157 79 72 chr11 102793498 102794268 -19049588 - RMER19B LTR ERVK -18 884 1 7 1369 764 235 64 32 chr11 102794564 102794784 -19049072 + B4 SINE B4 2 228 -64 7 1369 813 195 0 0 chr11 102794792 102794941 -19048915 + B1_Mur1 SINE Alu 1 149 0 7 1369 474 240 8 62 chr11 102795219 102795348 -19048508 - LTR16A LTR ERVL -324 127 6 7 1369 725 152 71 14 chr11 102795451 102795591 -19048265 - B1_Mur4 SINE Alu 0 150 3 7 1369 801 155 178 21 chr11 102796223 102796414 -19047442 - URR1B DNA MER1_type 0 225 5 7 1369 255 305 91 48 chr11 102796833 102797019 -19046837 - MIRm SINE MIR -71 197 4 7 1369 382 267 58 33 chr11 102799649 102799769 -19044087 + PB1 SINE Alu 1 123 -4 7 1369 253 245 107 0 chr11 102800161 102800280 -19043576 - MIRb SINE MIR -69 199 61 7 1369 388 37 0 18 chr11 102800294 102800349 -19043507 + B1_Mm SINE Alu 93 146 -1 7 1369 287 224 0 50 chr11 102801231 102801311 -19042545 + G-rich Low_complexity Low_complexity 2 77 0 7 1369 1229 174 5 5 chr11 102802272 102802480 -19041376 + B3 SINE B2 1 208 -8 7 1369 29 0 0 0 chr11 102802480 102802509 -19041347 + AT_rich Low_complexity Low_complexity 1 29 0 7 1369 412 241 98 49 chr11 102802906 102803028 -19040828 + RSINE1 SINE B4 3 130 -35 7 1369 304 158 18 0 chr11 102803083 102803140 -19040716 + B1_Mur4 SINE Alu 2 59 -91 7 1369 567 146 0 60 chr11 102803175 102803292 -19040564 + B1_Mur4 SINE Alu 40 149 -1 7 1369 851 102 0 23 chr11 102804231 102804362 -19039494 - B1_Mur3 SINE Alu -18 131 4 7 1369 30 0 0 0 chr11 102807640 102807670 -19036186 + GC_rich Low_complexity Low_complexity 1 30 0 7 1369 24 0 0 0 chr11 102807934 102807958 -19035898 + GC_rich Low_complexity Low_complexity 1 24 0 7 1369 476 326 27 16 chr11 102809387 102809571 -19034285 - MIR SINE MIR -42 220 35 7 1369 421 257 32 63 chr11 102810829 102810987 -19032869 - RSINE1 SINE B4 -10 155 3 7 1369 402 21 0 0 chr11 102810992 102811039 -19032817 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 7 1369 582 86 0 0 chr11 102811042 102811123 -19032733 + (TTTCC)n Simple_repeat Simple_repeat 1 81 0 7 1369 216 0 0 0 chr11 102811123 102811147 -19032709 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 7 1369 303 266 33 12 chr11 102811149 102811249 -19032607 - PB1D10 SINE Alu -10 110 5 7 1369 752 128 24 0 chr11 102811270 102811395 -19032461 - B1_Mus1 SINE Alu -14 134 7 7 1369 218 327 133 0 chr11 102811300 102811413 -19032443 - B4A SINE B4 -98 194 67 7 1369 1038 197 14 19 chr11 102811990 102812202 -19031654 - B3 SINE B2 -4 212 2 7 1369 814 141 0 8 chr11 102812220 102812349 -19031507 - B1_Mur2 SINE Alu -21 128 1 7 1369 366 332 39 63 chr11 102813253 102813459 -19030397 - MIRb SINE MIR -46 222 22 7 1369 206 95 24 0 chr11 102813655 102813697 -19030159 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1369 581 171 29 0 chr11 102813699 102813804 -19030052 - B1_Mus2 SINE Alu 0 147 40 8 1369 245 255 0 0 chr11 102814855 102814902 -19028954 - ID2 SINE ID -29 54 8 8 1369 297 301 117 0 chr11 102814931 102815034 -19028822 - PB1D10 SINE Alu -2 115 1 8 1369 1155 43 0 0 chr11 102815050 102815190 -19028666 + B1_Mus1 SINE Alu 2 141 -7 8 1369 708 74 0 0 chr11 102815192 102815287 -19028569 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 8 1369 231 299 13 38 chr11 102815339 102815444 -19028412 - MIR SINE MIR -106 170 65 8 1369 1377 43 37 16 chr11 102815694 102815881 -19027975 + B2_Mm2 SINE B2 2 192 -3 8 1369 459 284 36 66 chr11 102815986 102816152 -19027704 + MER45A DNA Tip100 1 161 -17 8 1369 228 269 45 0 chr11 102816980 102817047 -19026809 - B3A SINE B2 -126 72 3 8 1369 583 196 9 0 chr11 102817497 102817609 -19026247 + B1_Mur1 SINE Alu 1 113 -36 8 1369 346 293 20 0 chr11 102817627 102817726 -19026130 + ID_B1 SINE B4 84 184 -40 8 1369 207 0 0 0 chr11 102818814 102818837 -19025019 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1369 327 317 0 0 chr11 102820177 102820278 -19023578 + PB1D10 SINE Alu 1 101 -16 8 1369 1274 66 11 11 chr11 102820334 102820519 -19023337 - B2_Mm2 SINE B2 -1 194 10 8 1369 644 233 19 64 chr11 102820560 102820716 -19023140 + RSINE1 SINE B4 3 151 -14 8 1369 205 189 38 0 chr11 102820762 102820776 -19023080 + polypurine Low_complexity Low_complexity 2 16 0 8 1369 1145 62 0 0 chr11 102820776 102820915 -19022941 + B1_Mus2 SINE Alu 1 139 -8 8 1369 191 61 0 29 chr11 102820915 102820949 -19022907 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 8 1369 205 189 38 0 chr11 102820955 102820993 -19022863 + polypurine Low_complexity Low_complexity 17 55 0 8 1369 384 269 16 87 chr11 102821020 102821146 -19022710 + ID_B1 SINE B4 100 216 -8 8 1369 1180 173 0 19 chr11 102821291 102821503 -19022353 + B3 SINE B2 2 209 -7 8 1369 387 0 0 0 chr11 102821504 102821547 -19022309 + (TAA)n Simple_repeat Simple_repeat 3 45 0 8 1369 387 0 0 0 chr11 102821884 102821927 -19021929 + (TGG)n Simple_repeat Simple_repeat 2 44 0 8 1369 337 303 8 0 chr11 102822028 102822150 -19021706 + (TGG)n Simple_repeat Simple_repeat 3 125 0 8 1369 302 253 96 0 chr11 102822317 102822400 -19021456 + PB1D10 SINE Alu 23 113 -4 8 1369 247 278 0 0 chr11 102822521 102822575 -19021281 - ID4_ SINE ID -29 54 1 8 1369 396 0 0 0 chr11 102823061 102823105 -19020751 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 8 1369 219 206 58 14 chr11 102823255 102823324 -19020532 + (ATGGTG)n Simple_repeat Simple_repeat 4 75 0 8 1369 515 326 26 0 chr11 102823402 102823592 -19020264 - ID_B1 SINE B4 -29 195 1 8 1369 1127 48 14 0 chr11 102823631 102823776 -19020080 - B1_Mus1 SINE Alu 0 148 2 8 1369 528 269 68 6 chr11 102823783 102823944 -19019912 - MIR SINE MIR -14 248 78 8 1369 1280 88 16 5 chr11 102823944 102824128 -19019728 + B2_Mm2 SINE B2 2 187 -8 8 1369 200 176 0 0 chr11 102826140 102826174 -19017682 + C-rich Low_complexity Low_complexity 1 34 0 8 1369 185 0 0 39 chr11 102827324 102827350 -19016506 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 8 1369 262 191 0 0 chr11 102827430 102827472 -19016384 + MIR SINE MIR 109 150 -58 8 1369 978 128 0 0 chr11 102827472 102827621 -19016235 + B1_Mur4 SINE Alu 2 150 0 8 1369 221 277 102 10 chr11 102828446 102828561 -19015295 - MIRc SINE MIR -90 186 63 8 1369 246 278 63 50 chr11 102828624 102828642 -19015214 - B4A SINE B4 -46 246 230 8 1369 744 221 0 0 chr11 102828642 102828782 -19015074 - B1_Mur1 SINE Alu -6 143 4 8 1369 498 237 40 39 chr11 102828782 102828944 -19014912 - ID_B1 SINE B4 -63 229 65 8 1369 207 0 0 0 chr11 102830531 102830554 -19013302 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1369 903 217 28 42 chr11 102830554 102830770 -19013086 - ID_B1 SINE B4 -10 214 2 8 1369 587 164 19 0 chr11 102832448 102832552 -19011304 - B1_Mus2 SINE Alu -1 146 41 8 1369 654 126 0 0 chr11 102832552 102832655 -19011201 + (TCC)n Simple_repeat Simple_repeat 3 105 0 8 1369 773 146 35 7 chr11 102833978 102834123 -19009733 + B1_Mur4 SINE Alu 1 149 -1 8 1369 201 39 0 0 chr11 102834126 102834152 -19009704 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 8 1369 624 206 28 35 chr11 102834170 102834311 -19009545 + ID_B1 SINE B4 1 140 -84 8 1369 634 132 8 16 chr11 102834311 102834337 -19009519 + polypurine Low_complexity Low_complexity 2 27 0 8 1369 1178 59 142 0 chr11 102834337 102834506 -19009350 + B2_Mm1t SINE B2 1 193 0 8 1369 634 132 8 16 chr11 102834506 102834602 -19009254 + polypurine Low_complexity Low_complexity 28 123 0 8 1369 289 297 0 47 chr11 102834602 102834708 -19009148 + ID_B1 SINE B4 122 222 -2 8 1369 387 0 0 0 chr11 102834722 102834765 -19009091 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1369 226 230 0 47 chr11 102834799 102834863 -19008993 - RSINE1 SINE B4 -28 137 77 8 1369 1070 79 0 0 chr11 102834935 102835074 -19008782 + B1_Mm SINE Alu 1 139 -8 8 1369 282 29 0 0 chr11 102835074 102835109 -19008747 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1369 736 161 0 81 chr11 102835134 102835283 -19008573 + B1_Mur1 SINE Alu 13 149 0 8 1369 367 308 15 37 chr11 102835388 102835523 -19008333 + MIR SINE MIR 116 247 -15 8 1369 302 237 161 0 chr11 102836013 102836106 -19007750 + PB1D10 SINE Alu 1 108 -9 8 1369 260 221 0 94 chr11 102836113 102836198 -19007658 + ID4_ SINE ID 1 77 -6 8 1369 233 371 8 15 chr11 102836206 102836340 -19007516 - YREP_Mm Unknown Unknown -1486 326 194 8 1369 647 232 0 0 chr11 102836221 102836346 -19007510 + ID_B1 SINE B4 87 211 -13 8 1369 1171 82 0 23 chr11 102836342 102836517 -19007339 - B2_Mm2 SINE B2 -18 177 7 8 1369 563 243 117 12 chr11 102836565 102836736 -19007120 + B3 SINE B2 28 216 0 8 1369 1228 225 38 22 chr11 102836886 102837204 -19006652 - L1ME1 LINE L1 0 6179 5857 8 1369 469 284 35 41 chr11 102837237 102837266 -19006590 - B3 SINE B2 0 216 185 8 1369 1109 49 14 0 chr11 102837266 102837408 -19006448 - B1_Mus1 SINE Alu 0 148 5 8 1369 469 284 35 41 chr11 102837408 102837547 -19006309 - B3 SINE B2 -32 184 50 8 1369 428 97 0 16 chr11 102837549 102837612 -19006244 - B1_Mur4 SINE Alu -74 76 15 8 1369 1036 57 14 28 chr11 102837614 102837759 -19006097 + B1_Mus2 SINE Alu 5 147 0 8 1369 197 54 0 75 chr11 102837762 102837802 -19006054 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1369 921 32 159 0 chr11 102837824 102837950 -19005906 + B1_Mm SINE Alu 2 147 0 8 1369 380 294 0 9 chr11 102838025 102838132 -19005724 - B3A SINE B2 -2 196 91 8 1369 669 327 9 9 chr11 102838132 102838345 -19005511 + B4A SINE B4 1 213 -79 8 1369 180 111 0 0 chr11 102838345 102838372 -19005484 + (CACG)n Simple_repeat Simple_repeat 1 27 0 8 1369 290 296 12 0 chr11 102838401 102838482 -19005374 + ID4_ SINE ID 1 82 -1 8 1369 562 210 0 25 chr11 102838483 102838644 -19005212 + (CATATA)n Simple_repeat Simple_repeat 2 158 0 8 1369 248 262 0 0 chr11 102838649 102838670 -19005186 + (CATA)n Simple_repeat Simple_repeat 2 22 0 8 1369 2975 34 47 13 chr11 102838670 102839053 -19004803 - MTA_Mm LTR MaLR 0 396 1 8 1369 248 262 0 0 chr11 102839053 102839092 -19004764 + (CATA)n Simple_repeat Simple_repeat 3 41 0 8 1369 202 295 0 0 chr11 102839255 102839316 -19004540 + MIRc SINE MIR 103 163 -105 8 1369 724 146 79 21 chr11 102839404 102839544 -19004312 - B1_Mur4 SINE Alu 0 150 3 8 1369 198 0 0 0 chr11 102840387 102840409 -19003447 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1369 603 104 0 0 chr11 102840409 102840515 -19003341 + (GA)n Simple_repeat Simple_repeat 2 107 0 8 1369 193 200 111 0 chr11 102840816 102840861 -19002995 + MIRc SINE MIR 90 139 -129 8 1369 375 290 28 0 chr11 102840870 102840977 -19002879 + PB1D10 SINE Alu 1 110 -7 8 1369 269 241 32 15 chr11 102840987 102841088 -19002768 + ID4_ SINE ID 6 107 -45 8 1369 322 314 59 0 chr11 102841092 102841194 -19002662 + PB1D9 SINE Alu 2 109 -11 8 1369 504 0 0 0 chr11 102841194 102841250 -19002606 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1369 486 0 0 0 chr11 102841717 102841771 -19002085 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1369 401 275 27 47 chr11 102842651 102842800 -19001056 - RSINE1 SINE B4 -15 150 5 8 1369 185 83 28 0 chr11 102842818 102842854 -19001002 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 8 1369 1024 186 65 32 chr11 102843180 102843397 -19000459 + URR1A DNA MER1_type 1 224 -2 8 1369 266 177 71 71 chr11 102843754 102843839 -19000017 - MIR3 SINE MIR -14 194 110 8 1369 408 111 0 0 chr11 102844228 102844291 -18999565 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1369 354 23 0 0 chr11 102844566 102844609 -18999247 + (TGAG)n Simple_repeat Simple_repeat 4 46 0 8 1369 204 238 0 0 chr11 102845079 102845121 -18998735 + CT-rich Low_complexity Low_complexity 3 44 0 8 1369 742 24 56 8 chr11 102845237 102845363 -18998493 + (TG)n Simple_repeat Simple_repeat 2 133 0 8 1369 348 24 0 0 chr11 102846153 102846194 -18997662 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1369 180 77 0 0 chr11 102846479 102846505 -18997351 + (C)n Simple_repeat Simple_repeat 1 26 0 8 1369 240 35 0 0 chr11 102846856 102846885 -18996971 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1369 489 17 0 0 chr11 102846897 102846955 -18996901 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1369 212 315 11 11 chr11 102847049 102847139 -18996717 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 8 1369 417 207 165 0 chr11 102847156 102847277 -18996579 - B1F1 SINE Alu -6 143 3 8 1369 246 270 0 13 chr11 102847651 102847726 -18996130 + MER3 DNA MER1_type 40 113 -96 9 1369 241 154 53 6 chr11 102847758 102847819 -18996037 - PB1D9 SINE Alu 0 120 49 9 1369 317 226 137 0 chr11 102847993 102848095 -18995761 - MIRc SINE MIR -116 152 37 9 1369 504 62 0 59 chr11 102848297 102848373 -18995483 - URR1B DNA MER1_type 0 225 155 9 1369 213 39 0 0 chr11 102848373 102848399 -18995457 + (CAT)n Simple_repeat Simple_repeat 1 26 0 9 1369 31 58 0 0 chr11 102848410 102848462 -18995394 + AT_rich Low_complexity Low_complexity 1 52 0 9 1369 840 200 0 0 chr11 102848462 102848612 -18995244 - B1_Mur4 SINE Alu 0 150 1 9 1369 668 212 6 81 chr11 102848612 102848780 -18995076 - URR1B DNA MER1_type -70 155 1 9 1369 640 182 0 9 chr11 102849725 102849836 -18994020 + PB1D9 SINE Alu 2 111 -9 9 1369 184 282 76 90 chr11 102850179 102850323 -18993533 + MIRm SINE MIR 72 213 -63 9 1369 757 209 93 0 chr11 102850750 102850922 -18992934 - ID_B1 SINE B4 -35 189 2 9 1369 211 308 76 9 chr11 102851011 102851116 -18992740 - MIRb SINE MIR -123 145 34 9 1369 23 54 0 0 chr11 102851311 102851348 -18992508 + GC_rich Low_complexity Low_complexity 1 37 0 9 1369 710 108 0 9 chr11 102851958 102852070 -18991786 + B1_Mur4 SINE Alu 22 132 -18 9 1369 423 0 0 0 chr11 102852131 102852178 -18991678 + (TGGGGG)n Simple_repeat Simple_repeat 1 47 0 9 1369 327 25 0 0 chr11 102852434 102852474 -18991382 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 9 1369 323 0 48 0 chr11 102854139 102854181 -18989675 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 9 1369 934 72 0 0 chr11 102854181 102854306 -18989550 - B1_Mm SINE Alu -9 138 14 9 1369 490 238 31 50 chr11 102854306 102854340 -18989516 - ID_B1 SINE B4 -9 215 60 9 1369 208 283 80 10 chr11 102855378 102855478 -18988378 - L2c LINE L2 -18 3369 3263 9 1369 615 204 167 27 chr11 102857192 102857378 -18986478 - B3 SINE B2 -4 212 1 9 1369 289 299 23 0 chr11 102857474 102857561 -18986295 + ID_B1 SINE B4 2 90 -134 9 1369 1220 27 0 0 chr11 102858151 102858297 -18985559 + B1_Mus1 SINE Alu 3 148 0 9 1369 23 0 0 0 chr11 102858297 102858320 -18985536 + AT_rich Low_complexity Low_complexity 1 23 0 9 1369 262 306 45 20 chr11 102858944 102859080 -18984776 - L2c LINE L2 -211 3164 3027 9 1369 203 172 33 33 chr11 102859970 102860030 -18983826 + CT-rich Low_complexity Low_complexity 3 62 0 9 1369 270 271 0 54 chr11 102861793 102861867 -18981989 - ID4 SINE ID -9 74 5 9 1369 234 315 11 63 chr11 102861864 102861959 -18981897 - PB1D10 SINE Alu -16 101 12 9 1369 211 238 121 45 chr11 102862465 102862531 -18981325 + B1F SINE Alu 79 149 0 9 1369 638 285 13 13 chr11 102862553 102862706 -18981150 + RSINE1 SINE B4 3 155 -10 9 1369 1401 225 59 9 chr11 102862767 102863104 -18980752 + RCHARR1 DNA MER1_type 239 592 -382 9 1369 360 230 35 0 chr11 102863133 102863220 -18980636 + PB1D10 SINE Alu 28 117 0 9 1369 996 191 46 10 chr11 102863234 102863430 -18980426 + B3 SINE B2 1 203 -13 9 1369 741 189 28 7 chr11 102863533 102863677 -18980179 - B1_Mur4 SINE Alu -3 147 1 9 1369 1113 131 22 0 chr11 102864034 102864217 -18979639 - B2_Mm1t SINE B2 -5 188 2 9 1369 882 51 0 0 chr11 102864235 102864352 -18979504 - B1_Mm SINE Alu 0 147 31 9 1369 397 208 167 0 chr11 102864402 102864498 -18979358 - ID_B1 SINE B4 -30 194 83 9 1369 1227 27 0 0 chr11 102865244 102865392 -18978464 + B1_Mus1 SINE Alu 1 148 0 9 1369 349 284 0 22 chr11 102865394 102865484 -18978372 + L1MEg LINE L1 1882 1969 -4115 9 1369 1078 68 0 7 chr11 102865829 102865976 -18977880 + B1_Mm SINE Alu 2 147 0 9 1369 693 165 0 0 chr11 102866016 102866131 -18977725 + B1_Mur2 SINE Alu 35 149 0 9 1369 204 65 42 42 chr11 102866138 102866186 -18977670 + (TATG)n Simple_repeat Simple_repeat 3 50 0 9 1369 608 197 34 0 chr11 102866186 102866303 -18977553 - RSINE1 SINE B4 -42 123 3 9 1369 306 225 191 29 chr11 102867164 102867269 -18976587 - B3A SINE B2 -33 165 44 9 1369 222 284 15 0 chr11 102867408 102867475 -18976381 + MIRc SINE MIR 75 142 -126 9 1369 546 91 0 0 chr11 102868655 102868732 -18975124 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 9 1369 525 169 103 44 chr11 102868887 102869023 -18974833 + B1_Mus1 SINE Alu 5 148 0 9 1369 245 294 98 46 chr11 102869206 102869359 -18974497 + RSINE1 SINE B4 5 165 0 9 1369 505 171 1 0 chr11 102869433 102869528 -18974328 + B1_Mur4 SINE Alu 52 148 -2 9 1369 611 297 159 10 chr11 102869651 102869960 -18973896 + RCHARR1 DNA MER1_type 11 365 -609 9 1369 343 263 28 49 chr11 102869962 102870106 -18973750 + ID_B1 SINE B4 14 154 -70 9 1369 363 241 112 69 chr11 102870116 102870232 -18973624 + RSINE1 SINE B4 10 130 -35 9 1369 637 137 82 30 chr11 102870276 102870411 -18973445 + B1_Mur4 SINE Alu 9 150 0 9 1369 293 292 52 52 chr11 102870277 102870432 -18973424 + B4A SINE B4 94 248 -44 9 1369 381 167 15 0 chr11 102870588 102870654 -18973202 + B1F SINE Alu 76 142 -7 9 1369 775 218 42 52 chr11 102870664 102870823 -18973033 + B3 SINE B2 6 161 -55 9 1369 1620 26 0 0 chr11 102870823 102871013 -18972843 + B2_Mm1t SINE B2 2 191 -2 9 1369 775 218 42 52 chr11 102871013 102871066 -18972790 + B3 SINE B2 162 216 0 9 1369 311 234 34 80 chr11 102871077 102871165 -18972691 + MT2B LTR ERVL 157 240 -361 9 1369 671 218 8 0 chr11 102871088 102871221 -18972635 + B1_Mus2 SINE Alu 6 139 -8 9 1369 293 218 12 25 chr11 102871218 102871298 -18972558 + RCHARR1 DNA MER1_type 661 739 -235 9 1369 630 261 111 35 chr11 102871290 102871489 -18972367 - B3 SINE B2 -1 215 2 9 1369 645 257 40 6 chr11 102871672 102871848 -18972008 - B3A SINE B2 -15 183 2 9 1369 553 281 96 5 chr11 102872182 102872379 -18971477 - B3 SINE B2 0 216 2 9 1369 312 265 121 35 chr11 102872411 102872552 -18971304 - RCHARR1 DNA MER1_type -185 789 637 9 1369 762 158 68 0 chr11 102872778 102872911 -18970945 - B1_Mur2 SINE Alu -6 143 2 9 1369 340 225 5 15 chr11 102872913 102872997 -18970859 - B4A SINE B4 -206 86 2 9 1369 795 137 21 7 chr11 102873079 102873219 -18970637 + B1_Mur3 SINE Alu 8 149 0 9 1369 567 55 345 0 chr11 102873333 102873443 -18970413 - B2_Mm2 SINE B2 -1 194 47 9 1369 981 77 141 0 chr11 102873471 102873627 -18970229 - B2_Mm1t SINE B2 -14 179 2 9 1369 1243 63 17 28 chr11 102873680 102873859 -18969997 - B2_Mm2 SINE B2 -9 186 10 9 1369 427 17 17 0 chr11 102873881 102873941 -18969915 - B1_Mm SINE Alu 0 147 87 9 1369 1132 99 76 0 chr11 102874122 102874294 -18969562 + B2_Mm2 SINE B2 2 186 -9 9 1369 180 0 0 0 chr11 102874308 102874328 -18969528 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1369 210 143 0 125 chr11 102874958 102875054 -18968802 + (CAG)n Simple_repeat Simple_repeat 3 86 0 9 1369 366 160 16 106 chr11 102875070 102875259 -18968597 + (CAG)n Simple_repeat Simple_repeat 3 174 0 9 1369 306 185 17 100 chr11 102875294 102875474 -18968382 + (CAG)n Simple_repeat Simple_repeat 3 167 0 9 1369 320 179 17 100 chr11 102875518 102875698 -18968158 + (CAG)n Simple_repeat Simple_repeat 3 167 0 9 1369 355 176 22 88 chr11 102875826 102876007 -18967849 + (CAG)n Simple_repeat Simple_repeat 3 171 0 9 1369 600 118 32 0 chr11 102876141 102876234 -18967622 - B1_Mur3 SINE Alu -22 127 32 9 1369 25 31 0 0 chr11 102876294 102876326 -18967530 + AT_rich Low_complexity Low_complexity 1 32 0 9 1369 658 200 107 45 chr11 102876338 102876516 -18967340 + B3 SINE B2 5 193 -23 9 1369 198 91 0 0 chr11 102876517 102876550 -18967306 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1369 321 228 11 92 chr11 102876557 102876644 -18967212 + ID4_ SINE ID 2 81 -2 9 1369 508 273 28 0 chr11 102876669 102876812 -18967044 - ID_B1 SINE B4 0 224 78 9 1369 385 89 47 71 chr11 102877083 102877168 -18966688 - B1_Mus1 SINE Alu -64 84 2 9 1369 356 261 108 0 chr11 102877168 102877279 -18966577 - RCHARR1 DNA MER1_type -493 481 359 9 1369 572 278 72 16 chr11 102877310 102877504 -18966352 - RCHARR1 DNA MER1_type -769 205 1 9 1369 192 279 226 19 chr11 102877894 102878000 -18965856 - MIRc SINE MIR -117 151 24 9 1369 214 205 0 0 chr11 102878589 102878628 -18965228 + T-rich Low_complexity Low_complexity 1 39 0 9 1369 990 45 83 0 chr11 102878628 102878761 -18965095 - B1_Mus1 SINE Alu 0 148 5 9 1369 618 24 0 0 chr11 102878787 102878870 -18964986 - L1Md_T LINE L1 0 6582 6500 9 1369 347 125 0 0 chr11 102879788 102879844 -18964012 + MTC LTR MaLR 1 56 -365 9 1369 216 0 0 0 chr11 102879845 102879869 -18963987 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1369 794 199 7 0 chr11 102879895 102880041 -18963815 + B1_Mur4 SINE Alu 4 150 0 9 1369 309 151 0 0 chr11 102880041 102880094 -18963762 + A-rich Low_complexity Low_complexity 1 53 0 9 1369 1393 204 23 44 chr11 102880094 102880437 -18963419 + MTC LTR MaLR 67 402 -19 9 1369 416 259 0 94 chr11 102881189 102881317 -18962539 + ID_B1 SINE B4 104 219 -5 9 1369 319 314 41 48 chr11 102881363 102881510 -18962346 + B1F SINE Alu 2 147 -2 9 1369 210 182 0 0 chr11 102881764 102881797 -18962059 - PB1D10 SINE Alu -25 92 60 9 1369 450 292 15 37 chr11 102881960 102882095 -18961761 - RSINE1 SINE B4 -31 134 3 9 1369 631 197 0 32 chr11 102882419 102882545 -18961311 + B1_Mus2 SINE Alu 9 130 -17 9 1369 446 256 42 70 chr11 102882562 102882705 -18961151 - B4A SINE B4 -153 139 1 9 1369 522 198 8 79 chr11 102883056 102883182 -18960674 + PB1D10 SINE Alu 1 117 0 9 1369 632 65 33 0 chr11 102883182 102883274 -18960582 + (GGGAGA)n Simple_repeat Simple_repeat 3 97 0 9 1369 180 0 0 0 chr11 102883617 102883637 -18960219 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 1369 285 288 39 65 chr11 102884132 102884235 -18959621 - BC1_Mm scRNA scRNA -47 105 4 9 1369 360 0 0 0 chr11 102884374 102884414 -18959442 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1369 822 273 23 14 chr11 102884492 102884711 -18959145 + ID_B1 SINE B4 1 221 -3 9 1369 755 238 135 0 chr11 102884711 102884868 -18958988 + B3 SINE B2 7 166 -50 9 1369 558 108 0 0 chr11 102884868 102884951 -18958905 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1369 755 238 135 0 chr11 102884951 102884978 -18958878 + B3 SINE B2 167 214 -2 9 1369 1103 75 0 0 chr11 102885085 102885231 -18958625 - B1_Mm SINE Alu 0 147 2 1 1369 329 0 0 24 chr11 102885280 102885322 -18958534 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 1 1369 294 286 0 0 chr11 102885330 102885393 -18958463 - ID4 SINE ID -6 77 15 1 1369 223 250 112 28 chr11 102885411 102885518 -18958338 - PB1D10 SINE Alu -1 116 1 1 1369 580 206 31 16 chr11 102885656 102885784 -18958072 + B1_Mur2 SINE Alu 7 136 -13 1 1369 180 0 0 0 chr11 102885784 102885804 -18958052 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1369 962 32 8 0 chr11 102885806 102885932 -18957924 - B1_Mus2 SINE Alu 0 147 21 1 1369 547 208 11 106 chr11 102885932 102885957 -18957899 - ID_B1 SINE B4 0 222 79 1 1369 180 0 0 0 chr11 102885957 102885977 -18957879 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1369 558 281 87 39 chr11 102885977 102886207 -18957649 + B4A SINE B4 30 270 -22 1 1369 593 170 47 88 chr11 102886350 102886467 -18957389 - B1_Mus1 SINE Alu -2 146 35 1 1369 4273 68 16 7 chr11 102886467 102887043 -18956813 + MT2B2 LTR ERVL 1 581 -3 1 1369 593 170 47 88 chr11 102887043 102887073 -18956783 - B1_Mus1 SINE Alu -114 34 5 1 1369 188 219 0 0 chr11 102887095 102887136 -18956720 + L2c LINE L2 3116 3156 -231 1 1369 249 182 0 68 chr11 102887231 102887290 -18956566 - ID_B1 SINE B4 -1 223 169 1 1369 311 310 60 0 chr11 102887396 102887496 -18956360 - B1F SINE Alu -42 107 2 1 1369 188 321 0 19 chr11 102887604 102887658 -18956198 + MIRm SINE MIR 29 81 -195 1 1369 1378 64 37 0 chr11 102887761 102887949 -18955907 + B2_Mm2 SINE B2 1 195 0 1 1369 262 233 0 48 chr11 102888059 102888122 -18955734 - tRNA-Ala-GCY_ tRNA tRNA 0 75 16 1 1369 304 321 67 7 chr11 102888710 102888845 -18955011 + MIR SINE MIR 106 248 -14 1 1369 1116 154 207 23 chr11 102888861 102889166 -18954690 + Lx9 LINE L1 7283 7643 -1 1 1369 403 267 69 0 chr11 102890743 102890859 -18952997 - B1F2 SINE Alu 0 149 26 1 1369 246 128 0 0 chr11 102891062 102891101 -18952755 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1369 187 54 26 26 chr11 102891140 102891178 -18952678 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1369 943 60 98 0 chr11 102891179 102891312 -18952544 - B1_Mus1 SINE Alu 0 148 3 1 1370 26 0 0 0 chr11 102891880 102891906 -18951950 + AT_rich Low_complexity Low_complexity 1 26 0 1 1370 600 179 51 0 chr11 102892439 102892556 -18951300 - B1_Mur4 SINE Alu -16 134 12 1 1370 593 233 62 0 chr11 102892571 102892700 -18951156 + B1_Mur1 SINE Alu 13 149 0 1 1370 392 295 19 0 chr11 102893069 102893174 -18950682 - ID_B1 SINE B4 -16 208 102 1 1370 378 0 0 0 chr11 102893233 102893275 -18950581 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1370 302 336 41 0 chr11 102893611 102893733 -18950123 - B3 SINE B2 -5 211 85 1 1370 463 284 58 6 chr11 102893817 102893973 -18949883 - RSINE1 SINE B4 0 165 2 1 1370 391 266 17 13 chr11 102894082 102894197 -18949659 + PB1D7 SINE Alu 21 128 -21 1 1370 319 216 27 13 chr11 102894252 102894327 -18949529 - MTD LTR MaLR -63 356 281 1 1370 380 37 0 18 chr11 102894391 102894446 -18949410 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1370 507 301 38 70 chr11 102894446 102894573 -18949283 - B3 SINE B2 -64 152 28 1 1370 439 224 80 0 chr11 102894573 102894698 -18949158 - B1F2 SINE Alu -13 136 2 1 1370 507 301 38 70 chr11 102894698 102894727 -18949129 - B3 SINE B2 -189 27 1 1 1370 180 0 0 0 chr11 102894732 102894752 -18949104 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1370 858 173 0 7 chr11 102894756 102894907 -18948949 - B1_Mur4 SINE Alu 0 150 1 1 1370 507 107 0 0 chr11 102894917 102894992 -18948864 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 1 1370 824 45 0 0 chr11 102894994 102895105 -18948751 - B1_Mus2 SINE Alu -1 146 36 1 1370 299 315 101 18 chr11 102895094 102895262 -18948594 - MTD LTR MaLR -206 201 20 1 1370 956 80 73 0 chr11 102895825 102895962 -18947894 - B1_Mus1 SINE Alu 0 148 2 1 1370 346 241 96 0 chr11 102896049 102896132 -18947724 - RSINE1 SINE B4 -53 112 22 1 1370 185 0 40 0 chr11 102896156 102896181 -18947675 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1370 1112 51 0 0 chr11 102896181 102896319 -18947537 - B1_Mus2 SINE Alu -9 138 1 1 1370 396 246 53 0 chr11 102896332 102896446 -18947410 - PB1D7 SINE Alu 0 120 1 1 1370 242 270 112 84 chr11 102897325 102897358 -18946498 - B2_Mm1a SINE B2 0 193 11 1 1370 549 239 41 21 chr11 102897358 102897503 -18946353 - RSINE1 SINE B4 -6 159 12 1 1370 580 197 79 0 chr11 102897787 102897914 -18945942 + B1_Mur2 SINE Alu 1 137 -12 1 1370 186 133 0 0 chr11 102897933 102897963 -18945893 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1370 1523 46 0 0 chr11 102897973 102898170 -18945686 + L1Md_A LINE L1 6386 6582 0 1 1370 282 259 47 0 chr11 102898858 102898943 -18944913 - B1F SINE Alu -60 89 1 1 1370 1092 107 152 5 chr11 102899046 102899243 -18944613 + URR1A DNA MER1_type 1 226 0 1 1370 601 233 8 8 chr11 102899697 102899831 -18944025 + B1_Mus2 SINE Alu 1 134 -13 1 1370 258 285 49 68 chr11 102899931 102900093 -18943763 - RSINE1 SINE B4 -6 159 1 1 1370 441 0 0 0 chr11 102900179 102900228 -18943628 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1370 240 169 0 0 chr11 102900260 102900308 -18943548 - B1_Mus1 SINE Alu -86 62 14 1 1370 940 201 53 10 chr11 102900353 102900559 -18943297 + B3 SINE B2 2 216 0 1 1370 526 214 17 17 chr11 102901089 102901208 -18942648 + PB1D9 SINE Alu 1 119 -1 1 1370 214 214 71 0 chr11 102901337 102901393 -18942463 - B1_Mur4 SINE Alu -5 145 86 1 1370 586 83 10 20 chr11 102901456 102901554 -18942302 - B2_Mm2 SINE B2 -19 176 80 1 1370 1209 101 16 16 chr11 102901653 102901845 -18942011 - B2_Mm1a SINE B2 -1 192 1 1 1370 458 292 8 0 chr11 102901849 102901969 -18941887 - B1F2 SINE Alu -1 148 28 1 1370 186 103 0 0 chr11 102901988 102902017 -18941839 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1370 1145 61 0 0 chr11 102902017 102902164 -18941692 - B1_Mus2 SINE Alu 0 147 1 1 1370 21 0 0 0 chr11 102902924 102902945 -18940911 + AT_rich Low_complexity Low_complexity 1 21 0 1 1370 219 36 0 0 chr11 102902945 102902973 -18940883 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 1 1370 396 0 0 0 chr11 102903057 102903101 -18940755 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1370 605 212 0 77 chr11 102903102 102903245 -18940611 - B1_Mur1 SINE Alu -13 136 5 1 1370 381 247 0 29 chr11 102903851 102903953 -18939903 + B1F SINE Alu 31 119 -1 1 1370 499 220 156 31 chr11 102903957 102904149 -18939707 + ID_B1 SINE B4 2 217 -7 1 1370 459 0 0 0 chr11 102904149 102904200 -18939656 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 1 1370 183 184 0 0 chr11 102904512 102904550 -18939306 + GA-rich Low_complexity Low_complexity 2 39 0 1 1370 284 175 18 0 chr11 102904899 102904956 -18938900 + RSINE1 SINE B4 29 86 -79 1 1370 824 126 26 32 chr11 102905033 102905189 -18938667 + URR1A DNA MER1_type 71 225 -1 1 1370 690 199 7 1 chr11 102905448 102905592 -18938264 - B1_Mur1 SINE Alu -5 144 2 1 1370 267 280 53 0 chr11 102905675 102905750 -18938106 - ID4 SINE ID -2 81 3 1 1370 281 289 33 22 chr11 102905779 102905871 -18937985 - RSINE1 SINE B4 -15 150 58 1 1370 836 37 0 0 chr11 102905850 102905959 -18937897 - B1_Mus2 SINE Alu -37 110 2 1 1370 299 226 0 16 chr11 102905853 102905979 -18937877 - ORR1B1-int LTR MaLR -755 754 631 1 1370 963 226 9 42 chr11 102906141 102906354 -18937502 - B3 SINE B2 -10 206 1 1 1370 374 255 47 0 chr11 102906365 102906471 -18937385 - PB1D10 SINE Alu -6 111 1 1 1370 400 271 105 0 chr11 102906583 102906716 -18937140 + B1F2 SINE Alu 3 149 0 1 1370 396 118 25 38 chr11 102906986 102907065 -18936791 - B1_Mm SINE Alu 0 147 70 1 1370 740 256 56 33 chr11 102907108 102907322 -18936534 - B4A SINE B4 -72 220 2 1 1370 396 217 31 42 chr11 102907345 102907441 -18936415 - PB1D10 SINE Alu 0 117 23 1 1370 695 185 59 0 chr11 102907470 102907605 -18936251 - B1_Mur1 SINE Alu 0 149 7 1 1370 468 254 35 0 chr11 102908268 102908382 -18935474 + B1_Mus1 SINE Alu 8 125 -23 1 1370 395 103 10 67 chr11 102908382 102908460 -18935396 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 1 1370 1218 102 0 6 chr11 102908460 102908637 -18935219 + B2_Mm2 SINE B2 2 177 -18 1 1370 395 103 10 67 chr11 102908637 102908662 -18935194 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 1370 222 118 0 0 chr11 102908931 102908965 -18934891 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1 1370 293 317 84 22 chr11 102908965 102909137 -18934719 - B3A SINE B2 -15 180 4 1 1370 785 136 40 54 chr11 102911218 102911366 -18932490 + B1_Mus2 SINE Alu 1 146 -1 1 1370 509 247 114 24 chr11 102911448 102911614 -18932242 + B3 SINE B2 8 188 -28 1 1370 460 243 42 85 chr11 102911619 102911808 -18932048 - B3A SINE B2 -15 183 3 1 1370 409 248 20 0 chr11 102912285 102912386 -18931470 + PB1D7 SINE Alu 18 120 0 1 1370 1506 37 11 0 chr11 102912397 102912587 -18931269 + B2_Mm1t SINE B2 2 193 0 1 1370 344 281 86 29 chr11 102913237 102913376 -18930480 - B1F2 SINE Alu -2 147 1 1 1370 236 337 138 49 chr11 102913376 102913443 -18930413 - B4 SINE B4 -205 87 3 1 1370 644 154 33 53 chr11 102913858 102914009 -18929847 - B1_Mus1 SINE Alu 0 148 1 1 1370 567 181 103 0 chr11 102914225 102914341 -18929515 - MTD LTR MaLR 0 419 292 1 1370 1270 74 0 38 chr11 102914353 102914536 -18929320 - B2_Mm2 SINE B2 -19 176 1 1 1370 368 261 33 0 chr11 102914540 102914632 -18929224 - MTD LTR MaLR -326 95 1 1 1370 450 200 38 9 chr11 102914658 102914764 -18929092 - B3 SINE B2 -103 113 5 1 1370 270 0 0 0 chr11 102914848 102914878 -18928978 + (GTTTG)n Simple_repeat Simple_repeat 3 32 0 1 1370 454 228 114 0 chr11 102914879 102915002 -18928854 - B1_Mur1 SINE Alu -11 138 2 1 1370 369 269 34 77 chr11 102915032 102915149 -18928707 - ID_B1 SINE B4 -106 118 7 1 1370 404 250 0 50 chr11 102915174 102915275 -18928581 - PB1D10 SINE Alu 0 117 22 1 1370 396 0 0 0 chr11 102915340 102915384 -18928472 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1370 267 31 0 0 chr11 102915484 102915516 -18928340 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1370 1142 50 0 0 chr11 102915520 102915660 -18928196 - B1_Mus2 SINE Alu -5 142 3 1 1370 1336 100 11 0 chr11 102915674 102915864 -18927992 - B2_Mm1t SINE B2 -1 192 1 1 1370 318 310 29 48 chr11 102915931 102916036 -18927820 - RSINE1 SINE B4 -17 148 46 1 1370 405 261 78 9 chr11 102916637 102916753 -18927103 - MLT1A1 LTR MaLR -46 362 239 1 1370 602 186 0 50 chr11 102917264 102917383 -18926473 + PB1D9 SINE Alu 2 114 -6 1 1370 218 338 15 0 chr11 102917410 102917478 -18926378 + PB1D10 SINE Alu 34 102 -15 1 1370 519 152 50 0 chr11 102917962 102918061 -18925795 + PB1D9 SINE Alu 8 111 -9 1 1370 284 286 56 48 chr11 102918061 102918083 -18925773 + B4A SINE B4 93 214 -78 1 1370 288 0 0 0 chr11 102920347 102920379 -18923477 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1370 469 198 73 0 chr11 102920379 102920475 -18923381 + ID_B1 SINE B4 109 211 -13 1 1370 429 20 0 0 chr11 102920677 102920727 -18923129 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1370 267 313 23 108 chr11 102920816 102920945 -18922911 - B4A SINE B4 -118 174 57 1 1370 4013 95 32 4 chr11 102921819 102922107 -18921749 - MYSERV16_I-int LTR ERVK -954 1372 988 1 1370 1220 27 0 0 chr11 102922107 102922253 -18921603 + B1_Mus1 SINE Alu 2 147 -1 1 1370 4013 200 73 64 chr11 102922253 102922789 -18921067 - MYSERV16_I-int LTR ERVK -1339 987 444 1 1370 1128 42 21 0 chr11 102922789 102922933 -18920923 + B1_Mus2 SINE Alu 1 147 0 1 1370 4013 214 68 69 chr11 102922933 102923488 -18920368 - MYSERV16_I-int LTR ERVK -1883 443 2 1 1370 1101 75 7 0 chr11 102924011 102924158 -18919698 + B1_Mus1 SINE Alu 1 148 0 1 1370 251 93 0 53 chr11 102924158 102924215 -18919641 + (A)n Simple_repeat Simple_repeat 1 54 0 1 1370 1240 209 116 7 chr11 102924649 102924943 -18918913 - RLTR20C LTR ERVK -205 329 4 1 1370 198 0 0 0 chr11 102925029 102925051 -18918805 + (G)n Simple_repeat Simple_repeat 1 22 0 1 1370 516 16 0 0 chr11 102926336 102926397 -18917459 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1370 414 206 19 76 chr11 102926421 102926526 -18917330 - B1_Mur1 SINE Alu -41 108 10 1 1370 390 286 130 11 chr11 102926529 102926706 -18917150 - ID_B1 SINE B4 -1 223 26 1 1370 32 43 0 0 chr11 102927391 102927437 -18916419 + AT_rich Low_complexity Low_complexity 1 46 0 1 1370 268 286 116 0 chr11 102930560 102930672 -18913184 - PB1 SINE Alu -2 125 1 1 1370 1072 114 49 5 chr11 102930840 102931025 -18912831 - B2_Mm1a SINE B2 0 193 1 1 1370 369 58 0 0 chr11 102933488 102933540 -18910316 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1370 369 258 121 0 chr11 102933579 102933711 -18910145 - B1F2 SINE Alu 0 149 2 1 1370 762 297 4 60 chr11 102933750 102934001 -18909855 + B4A SINE B4 1 237 -55 1 1370 549 258 6 48 chr11 102934020 102934187 -18909669 + B3 SINE B2 47 206 -10 1 1370 216 267 51 51 chr11 102934185 102934264 -18909592 + RSINE1 SINE B4 87 165 0 1 1370 434 210 20 10 chr11 102934299 102934400 -18909456 - ID_B1 SINE B4 -8 216 115 1 1370 521 175 242 0 chr11 102934421 102934541 -18909315 + B1_Mur4 SINE Alu 2 150 0 1 1370 378 194 112 0 chr11 102934581 102934679 -18909177 + PB1D9 SINE Alu 12 120 0 1 1370 1332 84 15 20 chr11 102934772 102934967 -18908889 + B2_Mm2 SINE B2 2 195 0 1 1370 246 105 0 0 chr11 102936199 102936237 -18907619 + (TCC)n Simple_repeat Simple_repeat 1 38 0 1 1370 567 198 17 8 chr11 102936602 102936719 -18907137 - PB1D9 SINE Alu 0 120 3 1 1370 444 209 198 9 chr11 102936782 102936893 -18906963 - ID_B1 SINE B4 0 224 93 1 1370 574 233 143 96 chr11 102937016 102937225 -18906631 + ID_B1 SINE B4 3 221 -3 1 1370 948 148 0 13 chr11 102937321 102937479 -18906377 + B2_Mm2 SINE B2 1 156 -39 1 1370 1100 45 0 0 chr11 102937693 102937827 -18906029 + B1_Mus2 SINE Alu 2 135 -12 1 1370 206 0 69 0 chr11 102937828 102937857 -18905999 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1370 261 0 0 0 chr11 102939040 102939069 -18904787 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1370 725 215 0 7 chr11 102940482 102940632 -18903224 - B1_Mur1 SINE Alu 0 149 1 1 1370 489 254 0 9 chr11 102940707 102940822 -18903034 + PB1D10 SINE Alu 1 114 -3 1 1370 880 65 105 0 chr11 102941179 102941303 -18902553 - B1_Mus2 SINE Alu -9 138 2 1 1370 462 254 8 85 chr11 102942316 102942402 -18901454 + RSINE1 SINE B4 3 81 -84 1 1370 225 0 0 0 chr11 102942402 102942427 -18901429 + (CG)n Simple_repeat Simple_repeat 2 26 0 1 1370 180 0 0 0 chr11 102942427 102942446 -18901410 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1370 462 254 8 85 chr11 102942446 102942487 -18901369 + RSINE1 SINE B4 82 120 -45 1 1370 771 186 0 21 chr11 102943390 102943533 -18900323 - B1_Mur1 SINE Alu -1 148 9 1 1370 675 210 14 0 chr11 102943599 102943742 -18900114 - B1F SINE Alu 0 149 5 1 1370 212 179 0 0 chr11 102943840 102943879 -18899977 + CT-rich Low_complexity Low_complexity 2 40 0 1 1370 228 234 0 0 chr11 102943932 102943979 -18899877 + L2c LINE L2 3113 3159 -228 1 1370 650 241 27 14 chr11 102944038 102944185 -18899671 + B1F SINE Alu 1 149 0 1 1370 440 266 31 0 chr11 102944185 102944313 -18899543 + B3A SINE B2 1 132 -66 1 1370 186 43 0 0 chr11 102944333 102944356 -18899500 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1370 610 285 0 15 chr11 102944385 102944517 -18899339 + B1_Mur1 SINE Alu 4 133 -16 1 1370 1296 101 20 46 chr11 102944526 102944723 -18899133 - B2_Mm2 SINE B2 -2 193 2 1 1370 260 221 64 85 chr11 102944755 102944776 -18899080 + MT2B LTR ERVL 138 229 -372 1 1370 519 82 0 0 chr11 102944776 102944849 -18899007 + B1_Mus1 SINE Alu 1 73 -75 1 1370 234 137 35 105 chr11 102944907 102944964 -18898892 + PB1D10 SINE Alu 27 79 -38 1 1370 6801 15 1 0 chr11 102944976 102945717 -18898139 + RLTR4_Mm LTR ERV1 1 742 0 1 1370 65625 16 5 0 chr11 102945717 102953277 -18890579 + RLTR4_MM-int LTR ERV1 1 7601 0 1 1370 6778 16 1 0 chr11 102953277 102954018 -18889838 + RLTR4_Mm LTR ERV1 1 742 0 1 1370 992 214 35 10 chr11 102954074 102954277 -18889579 + B3 SINE B2 3 210 -6 1 1370 1366 124 0 5 chr11 102954280 102954475 -18889381 + B2_Mm2 SINE B2 2 195 0 1 1370 1163 76 7 0 chr11 102954477 102954621 -18889235 + B1_Mus1 SINE Alu 2 146 -2 1 1370 279 0 0 0 chr11 102954631 102954662 -18889194 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1370 685 285 98 4 chr11 102954662 102954898 -18888958 + B4A SINE B4 27 284 -8 1 1370 371 56 19 0 chr11 102954926 102954980 -18888876 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1370 561 304 50 12 chr11 102955376 102955536 -18888320 - B4 SINE B4 -126 166 1 1 1370 494 243 19 9 chr11 102956268 102956376 -18887480 + PB1D7 SINE Alu 1 109 -11 1 1370 315 222 42 53 chr11 102956888 102956983 -18886873 + PB1D10 SINE Alu 11 104 -13 1 1370 249 306 56 0 chr11 102957301 102957321 -18886535 - B1F SINE Alu -16 133 25 1 1370 361 217 0 0 chr11 102957321 102957404 -18886452 - ID_B1 SINE B4 -36 188 106 1 1370 334 295 105 8 chr11 102957445 102957578 -18886278 - B1F2 SINE Alu 0 149 4 1 1370 316 335 93 22 chr11 102957578 102957658 -18886198 - ID_B1 SINE B4 -130 94 2 1 1370 358 255 64 0 chr11 102957702 102957796 -18886060 - PB1D10 SINE Alu -7 110 11 1 1370 294 261 58 0 chr11 102957880 102957949 -18885907 - B1F1 SINE Alu -76 73 1 1 1370 270 0 0 0 chr11 102958371 102958401 -18885455 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1370 1238 35 0 0 chr11 102959423 102959566 -18884290 + B1_Mus2 SINE Alu 5 147 0 1 1370 351 332 91 23 chr11 102959685 102959751 -18884105 + MIR SINE MIR 18 88 -174 1 1370 338 224 176 46 chr11 102959751 102959882 -18883974 - B1F2 SINE Alu -1 148 1 1 1370 351 332 91 23 chr11 102959882 102960034 -18883822 + MIR SINE MIR 89 251 -11 1 1370 255 282 47 12 chr11 102961688 102961774 -18882082 + MIRb SINE MIR 88 176 -92 1 1370 380 70 0 0 chr11 102962080 102962137 -18881719 - B1_Mur4 SINE Alu -92 58 2 1 1370 311 138 0 17 chr11 102962084 102962143 -18881713 - B4A SINE B4 -154 138 81 1 1370 747 199 191 11 chr11 102962148 102962187 -18881669 - ID_B1 SINE B4 0 224 186 1 1370 276 30 0 0 chr11 102962187 102962220 -18881636 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1370 747 199 191 11 chr11 102962220 102962368 -18881488 - ID_B1 SINE B4 -39 185 5 1 1370 210 175 25 0 chr11 102967203 102967243 -18876613 - MIR SINE MIR -87 121 81 1 1370 212 59 0 29 chr11 102967685 102967720 -18876136 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1 1370 694 154 0 31 chr11 102967720 102967847 -18876009 - B1_Mus1 SINE Alu -2 146 24 1 1370 373 298 8 53 chr11 102968020 102968151 -18875705 - ID_B1 SINE B4 -22 202 78 1 1370 189 267 83 0 chr11 102968153 102968213 -18875643 - MIRm SINE MIR -126 150 86 1 1370 432 0 0 0 chr11 102968863 102968911 -18874945 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1370 1005 44 0 7 chr11 102969000 102969136 -18874720 + B1_Mm SINE Alu 13 147 0 1 1370 1180 59 59 0 chr11 102969232 102969401 -18874455 - B2_Mm1t SINE B2 -6 187 9 1 1370 428 226 26 14 chr11 102969407 102969523 -18874333 + B1F SINE Alu 16 129 -18 1 1370 1216 91 85 0 chr11 102969955 102969972 -18873884 - B2_Mm1a SINE B2 -1 192 176 1 1370 387 0 0 0 chr11 102969972 102970015 -18873841 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1370 1216 91 85 0 chr11 102970015 102970173 -18873683 - B2_Mm1a SINE B2 -18 175 3 1 1370 698 217 147 0 chr11 102970223 102970407 -18873449 - B3 SINE B2 -4 212 2 1 1370 496 214 0 10 chr11 102970425 102970529 -18873327 - B1_Mur1 SINE Alu 0 149 47 1 1370 603 176 9 9 chr11 102970553 102970662 -18873194 + PB1D7 SINE Alu 12 120 0 1 1370 339 224 189 19 chr11 102970563 102970673 -18873183 + B4A SINE B4 107 240 -52 1 1370 584 302 16 22 chr11 102970673 102970856 -18873000 + B3A SINE B2 1 182 -16 1 1370 339 224 189 19 chr11 102970856 102970904 -18872952 + B4A SINE B4 241 292 0 1 1370 1266 27 7 0 chr11 102971183 102971329 -18872527 + B1_Mm SINE Alu 1 147 0 1 1370 519 158 9 65 chr11 102971355 102971463 -18872393 - PB1D10 SINE Alu -5 112 11 1 1370 253 261 160 0 chr11 102971357 102971476 -18872380 - B4A SINE B4 -72 220 83 1 1370 332 224 40 0 chr11 102971508 102971584 -18872272 - ID4 SINE ID -2 81 3 1 1370 240 245 0 0 chr11 102971629 102971678 -18872178 - B3 SINE B2 -99 117 69 1 1370 1142 65 0 0 chr11 102971681 102971819 -18872037 + B1_Mus1 SINE Alu 2 139 -9 1 1370 1231 80 86 0 chr11 102971934 102972109 -18871747 - B2_Mm2 SINE B2 -5 190 1 1 1370 267 271 131 0 chr11 102972131 102972238 -18871618 - B3 SINE B2 0 216 96 1 1370 342 287 45 27 chr11 102972420 102972531 -18871325 - L1MC4 LINE L1 -1126 6916 6804 1 1370 790 218 112 0 chr11 102974904 102975092 -18868764 - B3 SINE B2 0 216 8 1 1370 267 293 81 0 chr11 102975358 102975457 -18868399 + PB1D10 SINE Alu 11 117 0 1 1370 560 284 71 15 chr11 102975747 102975944 -18867912 - B3 SINE B2 -4 212 5 1 1370 393 313 65 27 chr11 102975968 102976152 -18867704 + MIRc SINE MIR 21 211 -57 1 1370 298 256 11 11 chr11 102977579 102977666 -18866190 + GA-rich Low_complexity Low_complexity 1 87 0 1 1370 285 39 59 0 chr11 102980697 102980748 -18863108 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1370 1111 83 7 0 chr11 102981388 102981533 -18862323 + B1_Mm SINE Alu 2 147 0 1 1370 399 252 163 0 chr11 102982084 102982219 -18861637 + ID_B1 SINE B4 5 161 -63 1 1370 226 310 14 0 chr11 102982156 102982227 -18861629 + PB1D10 SINE Alu 18 89 -28 1 1370 508 69 0 0 chr11 102982227 102982303 -18861553 + L1Md_T LINE L1 5949 6024 -612 1 1370 1304 79 0 45 chr11 102982304 102982502 -18861354 + B2_Mm1t SINE B2 2 190 -3 1 1370 5094 31 0 0 chr11 102982502 102983081 -18860775 + L1Md_T LINE L1 6004 6582 0 1 1370 351 210 12 47 chr11 102983087 102983101 -18860755 + ID_B1 SINE B4 143 156 -68 1 1370 1146 63 28 0 chr11 102983101 102983244 -18860612 + B1_Mus2 SINE Alu 1 147 0 1 1370 351 210 12 47 chr11 102983244 102983314 -18860542 + ID_B1 SINE B4 157 224 0 1 1370 858 237 62 112 chr11 102983323 102983541 -18860315 + B4 SINE B4 2 215 -77 1 1370 634 245 0 39 chr11 102983541 102983694 -18860162 + B1_Mur1 SINE Alu 3 149 0 1 1370 858 237 62 112 chr11 102983694 102983779 -18860077 + B4 SINE B4 216 290 -2 1 1370 818 229 56 25 chr11 102983953 102984150 -18859706 + B3 SINE B2 1 203 -13 1 1370 1173 68 7 0 chr11 102984174 102984320 -18859536 + B1_Mus2 SINE Alu 1 147 0 1 1370 189 0 0 0 chr11 102984320 102984341 -18859515 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1370 462 310 0 0 chr11 102984355 102984468 -18859388 + ID_B1 SINE B4 86 198 -26 1 1370 255 302 67 0 chr11 102984699 102984789 -18859067 + B1_Mus1 SINE Alu 1 97 -51 1 1370 254 269 0 0 chr11 102984945 102984997 -18858859 + ID4_ SINE ID 4 55 -28 1 1370 595 316 43 9 chr11 102985084 102985295 -18858561 + Lx8 LINE L1 7113 7330 -143 1 1370 992 80 0 0 chr11 102985392 102985529 -18858327 + B2_Mm2 SINE B2 1 137 -58 1 1370 790 196 7 20 chr11 102985540 102985691 -18858165 + B1_Mur4 SINE Alu 2 150 0 1 1370 518 284 45 0 chr11 102985870 102986004 -18857852 - B1F SINE Alu -8 141 2 1 1370 1113 86 0 0 chr11 102986093 102986233 -18857623 + B1_Mus2 SINE Alu 1 140 -7 1 1370 579 122 0 0 chr11 102986252 102986342 -18857514 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1370 520 224 0 41 chr11 102986492 102986613 -18857243 - B1_Mur1 SINE Alu 0 149 34 1 1370 406 185 58 107 chr11 102986753 102986874 -18856982 - PB1D7 SINE Alu -5 115 1 1 1370 823 185 7 20 chr11 102987064 102987213 -18856643 - B1_Mur2 SINE Alu -1 148 2 1 1370 506 312 27 76 chr11 102987323 102987507 -18856349 + ID_B1 SINE B4 45 219 -5 1 1370 697 210 21 14 chr11 102987777 102987922 -18855934 + B1_Mur3 SINE Alu 2 147 -2 1 1370 558 272 24 8 chr11 102987944 102988070 -18855786 - B1F SINE Alu -17 132 5 1 1370 454 248 485 30 chr11 102988102 102988302 -18855554 + B4A SINE B4 2 292 0 1 1370 388 278 0 10 chr11 102988379 102988477 -18855379 - ID_B1 SINE B4 -14 210 114 1 1370 1082 110 0 0 chr11 102988477 102988623 -18855233 + B1_Mus1 SINE Alu 2 147 -1 1 1370 644 177 115 0 chr11 102988696 102988826 -18855030 - B1_Mur1 SINE Alu 0 149 5 1 1370 853 236 28 28 chr11 102988832 102989046 -18854810 - B3 SINE B2 0 216 3 1 1370 430 184 45 11 chr11 102989089 102989177 -18854679 + PB1D9 SINE Alu 23 113 -7 1 1370 366 200 124 48 chr11 102989201 102989306 -18854550 + PB1D9 SINE Alu 7 119 -1 1 1370 601 266 45 65 chr11 102989350 102989551 -18854305 - B3A SINE B2 0 198 2 1 1370 360 209 22 55 chr11 102989755 102989846 -18854010 + B1_Mm SINE Alu 60 147 0 1 1370 430 271 78 96 chr11 102990442 102990609 -18853247 - B4 SINE B4 -10 282 119 1 1370 570 179 107 0 chr11 102990625 102990737 -18853119 - B1_Mur4 SINE Alu -18 132 9 1 1370 395 273 146 49 chr11 102990641 102990744 -18853112 - B4 SINE B4 -88 204 91 1 1370 644 215 131 33 chr11 102990744 102990927 -18852929 - B3 SINE B2 -15 201 1 1 1370 395 273 146 49 chr11 102990927 102991008 -18852848 - B4 SINE B4 -202 90 2 1 1370 356 264 46 0 chr11 102991012 102991099 -18852757 - PB1D7 SINE Alu -6 114 24 1 1370 395 296 35 0 chr11 102991337 102991452 -18852404 - PB1D7 SINE Alu 0 120 2 1 1370 274 320 19 28 chr11 102991556 102991662 -18852194 + B1_Mm SINE Alu 43 147 0 1 1370 819 251 75 5 chr11 102991709 102991909 -18851947 + ID_B1 SINE B4 1 214 -10 1 1370 462 203 101 8 chr11 102992028 102992147 -18851709 + RSINE1 SINE B4 7 136 -29 1 1370 568 254 65 0 chr11 102992174 102992312 -18851544 + ID_B1 SINE B4 78 224 0 1 1370 229 235 272 0 chr11 102992325 102992406 -18851450 + B1F SINE Alu 13 115 -5 1 1370 427 135 27 0 chr11 102992551 102992625 -18851231 - B1_Mur1 SINE Alu -20 129 54 1 1370 180 0 0 0 chr11 102993130 102993150 -18850706 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1370 23 0 0 0 chr11 102994166 102994189 -18849667 + GC_rich Low_complexity Low_complexity 1 23 0 1 1370 423 0 0 0 chr11 102994439 102994486 -18849370 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1370 386 250 10 20 chr11 102995625 102995723 -18848133 - PB1D10 SINE Alu -20 97 1 1 1370 218 364 89 24 chr11 102995725 102995932 -18847924 - MIRb SINE MIR -6 262 42 1 1370 21 0 0 0 chr11 102995999 102996020 -18847836 + AT_rich Low_complexity Low_complexity 1 21 0 1 1370 294 29 0 0 chr11 102996258 102996293 -18847563 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 1370 403 231 13 0 chr11 102996294 102996372 -18847484 - ID4 SINE ID -3 80 2 1 1370 615 136 33 25 chr11 102996409 102996530 -18847326 - B1_Mur3 SINE Alu 0 149 28 1 1370 288 0 0 0 chr11 102996530 102996562 -18847294 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1370 261 83 0 0 chr11 102996988 102997024 -18846832 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1370 336 253 78 100 chr11 102997024 102997193 -18846663 + ID_B1 SINE B4 53 220 -4 1 1370 481 208 127 8 chr11 102997069 102997195 -18846661 + B1F SINE Alu 6 146 -3 1 1370 478 239 152 21 chr11 102997239 102997384 -18846472 + RSINE1 SINE B4 2 165 0 1 1370 337 176 206 11 chr11 102997631 102997723 -18846133 - B1_Mus1 SINE Alu -16 132 23 1 1370 190 0 0 62 chr11 102998115 102998147 -18845709 + (CCCCCA)n Simple_repeat Simple_repeat 2 31 0 1 1370 321 260 8 119 chr11 102998148 102998239 -18845617 + PB1 SINE Alu 21 108 -19 1 1370 1032 73 73 0 chr11 102998239 102998376 -18845480 - B1_Mus1 SINE Alu 0 148 2 1 1370 321 260 8 119 chr11 102998376 102998402 -18845454 + PB1 SINE Alu 109 125 -2 1 1370 240 390 83 13 chr11 102998409 102998565 -18845291 + ID_B1 SINE B4 3 169 -55 1 1370 324 211 0 27 chr11 102998518 102998591 -18845265 + PB1D10 SINE Alu 42 112 -5 1 1370 271 295 64 0 chr11 102998578 102998656 -18845200 - MER45R DNA Tip100 -1477 104 22 1 1370 252 241 18 202 chr11 102998651 102998760 -18845096 - PB1 SINE Alu -29 98 2 1 1370 687 258 139 5 chr11 102998841 102999028 -18844828 + ID_B1 SINE B4 13 224 0 1 1370 597 189 0 0 chr11 102999028 102999080 -18844776 + A-rich Low_complexity Low_complexity 1 52 0 1 1370 1225 55 0 0 chr11 102999080 102999226 -18844630 + B1_Mus2 SINE Alu 2 147 0 1 1370 597 189 0 0 chr11 102999226 102999300 -18844556 + A-rich Low_complexity Low_complexity 53 126 0 1 1370 666 223 90 19 chr11 103000537 103000734 -18843122 - B3 SINE B2 -2 193 2 1 1370 512 252 86 42 chr11 103000734 103000940 -18842916 - ID_B1 SINE B4 -60 232 3 2 1370 493 332 5 44 chr11 103000941 103001092 -18842764 + B3A SINE B2 2 145 -53 3 1370 267 31 0 0 chr11 103001092 103001124 -18842732 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1370 493 332 5 44 chr11 103001124 103001177 -18842679 + B3A SINE B2 146 197 -1 3 1370 240 310 127 13 chr11 103001397 103001554 -18842302 + ID_B1 SINE B4 2 176 -48 5 1370 318 174 174 0 chr11 103001490 103001559 -18842297 + PB1D7 SINE Alu 23 103 -17 6 1370 305 234 51 34 chr11 103002412 103002529 -18841327 - MIRc SINE MIR -105 163 39 7 1370 597 14 0 0 chr11 103002642 103002712 -18841144 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1370 450 0 0 0 chr11 103002896 103002946 -18840910 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1370 1088 36 7 0 chr11 103003479 103003616 -18840240 + (TC)n Simple_repeat Simple_repeat 1 138 0 1 1370 341 301 11 0 chr11 103004515 103004608 -18839248 + ID_B1 SINE B4 2 95 -129 1 1370 525 257 14 75 chr11 103004685 103004832 -18839024 + B3A SINE B2 2 139 -59 1 1370 225 0 0 0 chr11 103004846 103004871 -18838985 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 1 1370 2551 45 0 3 chr11 103004917 103005231 -18838625 - L1Md_F2 LINE L1 0 6582 6270 1 1370 361 288 78 42 chr11 103005242 103005434 -18838422 - L1MB5 LINE L1 -45 6129 5931 1 1370 196 240 134 71 chr11 103005785 103005897 -18837959 - MIR SINE MIR -128 134 16 1 1370 1460 78 0 16 chr11 103007160 103007354 -18836502 - B2_Mm2 SINE B2 -4 191 1 1 1370 238 196 103 78 chr11 103007359 103007475 -18836381 - B2_Mm1t SINE B2 -2 191 73 1 1370 490 126 45 22 chr11 103007488 103007577 -18836279 + PB1D9 SINE Alu 19 109 -11 1 1370 246 32 0 0 chr11 103007577 103007608 -18836248 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1370 1372 72 10 45 chr11 103007640 103007842 -18836014 + B2_Mm2 SINE B2 1 195 0 2 1370 417 338 124 24 chr11 103008256 103008465 -18835391 - MLT1B LTR MaLR 0 467 238 2 1370 549 0 0 0 chr11 103008465 103008526 -18835330 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1370 833 224 10 44 chr11 103008580 103008785 -18835071 - MLT1B LTR MaLR -156 234 37 2 1370 465 213 95 7 chr11 103008892 103009029 -18834827 - ID_B1 SINE B4 0 224 76 2 1370 1493 154 106 104 chr11 103009069 103009474 -18834382 - MTC LTR MaLR -12 409 4 2 1370 1276 41 0 0 chr11 103009477 103009623 -18834233 + B1_Mm SINE Alu 1 146 -1 2 1370 361 262 148 39 chr11 103009774 103009858 -18833998 + MTD LTR MaLR 1 100 -319 2 1370 369 43 0 0 chr11 103009858 103009905 -18833951 + (TATG)n Simple_repeat Simple_repeat 3 49 0 2 1370 361 262 148 39 chr11 103009905 103009975 -18833881 + MTD LTR MaLR 101 172 -247 2 1370 667 203 0 63 chr11 103009967 103010109 -18833747 + B1_Mur3 SINE Alu 17 149 0 2 1370 240 111 0 0 chr11 103010109 103010145 -18833711 + (GGA)n Simple_repeat Simple_repeat 3 38 0 3 1370 681 159 158 23 chr11 103010145 103010332 -18833524 + MTD LTR MaLR 197 406 -13 2 1370 189 0 0 0 chr11 103010385 103010406 -18833450 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1370 607 277 62 21 chr11 103010406 103010598 -18833258 - B4A SINE B4 -68 224 25 3 1370 226 313 44 15 chr11 103010547 103010615 -18833241 - ID4 SINE ID -10 73 4 3 1370 1182 178 71 0 chr11 103010664 103010861 -18832995 - B3 SINE B2 -3 213 3 3 1370 220 235 19 19 chr11 103010968 103011020 -18832836 - MIRm SINE MIR -123 153 102 3 1370 413 260 20 31 chr11 103011157 103011283 -18832573 + ID_B1 SINE B4 85 201 -23 3 1370 227 290 72 0 chr11 103011522 103011591 -18832265 - B3A SINE B2 -123 75 2 3 1370 224 30 30 0 chr11 103011881 103011914 -18831942 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 1370 1246 48 0 0 chr11 103011916 103012062 -18831794 - B1_Mus2 SINE Alu 0 147 2 3 1370 228 274 0 0 chr11 103012066 103012117 -18831739 - PB1D10 SINE Alu -66 51 1 4 1370 503 99 0 0 chr11 103012873 103012944 -18830912 + B1_Mus2 SINE Alu 1 71 -76 4 1370 627 212 37 15 chr11 103012953 103013087 -18830769 - B1_Mur1 SINE Alu 0 149 13 4 1370 232 250 31 15 chr11 103013084 103013149 -18830707 - PB1D10 SINE Alu 0 117 52 4 1370 189 0 0 0 chr11 103013198 103013219 -18830637 + (TCC)n Simple_repeat Simple_repeat 1 21 0 4 1370 1168 83 107 0 chr11 103013219 103013388 -18830468 - B2_Mm2 SINE B2 -7 188 2 4 1370 308 260 18 14 chr11 103013487 103013571 -18830285 + PB1D10 SINE Alu 1 87 -33 4 1370 752 296 55 30 chr11 103013595 103013851 -18830005 + B4A SINE B4 5 270 -22 4 1370 372 22 0 0 chr11 103013851 103013896 -18829960 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1370 752 296 55 30 chr11 103013896 103013910 -18829946 + B4A SINE B4 271 282 -10 4 1370 312 70 0 0 chr11 103013994 103014037 -18829819 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1370 243 345 79 55 chr11 103014039 103014119 -18829737 - B4 SINE B4 -12 280 199 5 1370 1278 34 0 0 chr11 103014119 103014267 -18829589 - B1_Mus1 SINE Alu 0 148 1 5 1370 365 309 28 14 chr11 103014267 103014388 -18829468 - ID_B1 SINE B4 -94 198 74 5 1370 695 214 47 68 chr11 103014559 103014572 -18829284 - B3 SINE B2 -2 214 202 5 1370 204 125 0 0 chr11 103014572 103014604 -18829252 + (TATG)n Simple_repeat Simple_repeat 1 32 0 5 1370 695 214 47 68 chr11 103014604 103014781 -18829075 - B3 SINE B2 -15 201 29 5 1370 252 167 0 0 chr11 103014796 103014844 -18829012 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 5 1370 901 132 0 27 chr11 103014867 103015015 -18828841 - B1_Mm SINE Alu -3 144 1 5 1370 21 57 0 0 chr11 103015015 103015050 -18828806 + AT_rich Low_complexity Low_complexity 1 35 0 5 1370 449 270 247 38 chr11 103015081 103015320 -18828536 - B4A SINE B4 0 292 4 5 1370 452 294 119 0 chr11 103015320 103015447 -18828409 - B4A SINE B4 -66 226 83 5 1370 274 204 10 31 chr11 103015447 103015533 -18828323 + (TTG)n Simple_repeat Simple_repeat 3 88 0 5 1370 1196 48 0 33 chr11 103015533 103015684 -18828172 - B1_Mm SINE Alu 0 147 2 6 1370 274 204 10 31 chr11 103015684 103015693 -18828163 + (TTG)n Simple_repeat Simple_repeat 1 8 0 6 1370 1041 118 7 0 chr11 103015693 103015837 -18828019 - B1_Mus1 SINE Alu -2 146 2 6 1370 597 209 70 0 chr11 103016283 103016412 -18827444 + RSINE1 SINE B4 12 149 -16 6 1370 981 130 0 0 chr11 103016414 103016576 -18827280 + (CA)n Simple_repeat Simple_repeat 1 162 0 6 1370 648 194 29 15 chr11 103016626 103016762 -18827094 + B1_Mur1 SINE Alu 11 148 -1 6 1370 512 273 124 6 chr11 103017029 103017206 -18826650 - B3A SINE B2 0 198 1 6 1370 395 229 19 103 chr11 103017221 103017328 -18826528 - PB1D9 SINE Alu -17 103 6 6 1370 186 43 0 0 chr11 103017337 103017360 -18826496 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 6 1370 778 264 9 103 chr11 103017360 103017592 -18826264 - ID_B1 SINE B4 -14 210 1 6 1370 353 286 36 116 chr11 103017635 103017939 -18825917 - MTE2a LTR MaLR -7 372 88 7 1370 818 86 26 0 chr11 103017939 103018055 -18825801 + PB1D9 SINE Alu 1 119 -1 7 1370 273 345 35 108 chr11 103018055 103018157 -18825699 - MTE2a LTR MaLR -272 87 2 7 1370 342 200 165 29 chr11 103018326 103018429 -18825427 + PB1D9 SINE Alu 3 119 -1 7 1370 291 236 53 26 chr11 103018487 103018499 -18825357 - PB1D10 SINE Alu -1 116 105 7 1370 1224 55 0 0 chr11 103018499 103018644 -18825212 - B1_Mus1 SINE Alu -2 146 2 7 1370 291 236 53 26 chr11 103018644 103018744 -18825112 - PB1D10 SINE Alu -13 104 1 7 1370 516 312 15 15 chr11 103018754 103018925 -18824931 + ID_B1 SINE B4 60 224 0 7 1370 225 0 0 0 chr11 103018932 103018957 -18824899 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 1370 566 225 35 48 chr11 103019053 103019198 -18824658 - B1_Mur1 SINE Alu -1 148 6 7 1370 209 333 0 0 chr11 103019266 103019326 -18824530 + CT-rich Low_complexity Low_complexity 2 61 0 7 1370 779 127 127 0 chr11 103019386 103019512 -18824344 + B1_Mus1 SINE Alu 1 142 -6 7 1370 306 0 0 0 chr11 103019516 103019550 -18824306 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 1370 206 283 0 0 chr11 103020158 103020204 -18823652 + G-rich Low_complexity Low_complexity 5 50 0 8 1370 378 0 0 0 chr11 103020760 103020802 -18823054 + (T)n Simple_repeat Simple_repeat 1 42 0 8 1370 290 238 16 0 chr11 103020826 103020889 -18822967 - ID4_ SINE ID -17 66 3 8 1370 324 157 71 0 chr11 103020889 103020948 -18822908 - B1_Mm SINE Alu -36 111 48 8 1370 614 225 23 0 chr11 103021206 103021335 -18822521 - B1_Mur4 SINE Alu -13 137 6 8 1370 886 156 20 7 chr11 103021381 103021677 -18822179 + (TATATG)n Simple_repeat Simple_repeat 1 299 0 8 1370 512 232 72 0 chr11 103021679 103021817 -18822039 - RSINE1 SINE B4 0 165 18 8 1370 427 285 24 0 chr11 103021833 103021956 -18821900 - B4A SINE B4 -86 206 81 8 1370 589 195 8 17 chr11 103022413 103022533 -18821323 - PB1D9 SINE Alu -1 119 1 8 1371 495 309 105 11 chr11 103022596 103022786 -18821070 - B4 SINE B4 -2 290 83 9 1371 1122 96 0 0 chr11 103023064 103023210 -18820646 + B1_Mus1 SINE Alu 2 147 -1 9 1371 365 145 0 13 chr11 103023408 103023485 -18820371 + (TAAA)n Simple_repeat Simple_repeat 1 76 0 9 1371 675 246 61 6 chr11 103023528 103023708 -18820148 + B3A SINE B2 5 194 -4 9 1371 646 277 84 9 chr11 103023716 103023913 -18819943 - B3A SINE B2 -1 197 1 9 1371 270 176 0 0 chr11 103023914 103023965 -18819891 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 9 1371 265 289 16 102 chr11 103024016 103024143 -18819713 + B3A SINE B2 96 211 -5 9 1371 1393 80 5 5 chr11 103024145 103024333 -18819523 + B2_Mm2 SINE B2 3 190 -5 9 1371 622 213 0 135 chr11 103024361 103024524 -18819332 - B1_Mur1 SINE Alu -6 143 3 9 1371 514 132 47 0 chr11 103024585 103024687 -18819169 - B1_Mus1 SINE Alu -21 128 21 9 1371 387 0 0 0 chr11 103024690 103024733 -18819123 + (CCA)n Simple_repeat Simple_repeat 2 44 0 1 1371 461 240 9 46 chr11 103024947 103025056 -18818800 - ID_B1 SINE B4 -18 206 102 1 1371 687 216 18 12 chr11 103025065 103025229 -18818627 + MER3 DNA MER1_type 9 173 -36 1 1371 1180 220 0 0 chr11 103025230 103025439 -18818417 + B3 SINE B2 1 209 -7 1 1371 1200 29 0 0 chr11 103025458 103025596 -18818260 + B1_Mm SINE Alu 1 138 -9 1 1371 1259 54 0 0 chr11 103026284 103026432 -18817424 - B1_Mus1 SINE Alu 0 148 1 1 1371 297 75 0 0 chr11 103026433 103026473 -18817383 + (TTCCC)n Simple_repeat Simple_repeat 4 43 0 1 1371 942 134 28 0 chr11 103026538 103026680 -18817176 + B1_Mus1 SINE Alu 1 146 -2 1 1371 947 228 36 0 chr11 103026716 103026909 -18816947 + B3 SINE B2 8 207 -9 1 1371 501 47 0 0 chr11 103026913 103026977 -18816879 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 1 1371 449 220 0 57 chr11 103026980 103027073 -18816783 - MTD LTR MaLR -307 112 23 1 1371 468 0 0 0 chr11 103027073 103027125 -18816731 + (CAAAC)n Simple_repeat Simple_repeat 3 54 0 1 1371 449 220 0 57 chr11 103027125 103027137 -18816719 - MTD LTR MaLR -397 22 13 1 1371 1417 194 114 23 chr11 103027284 103027627 -18816229 - ORR1D1 LTR MaLR 0 374 1 1 1371 251 303 0 84 chr11 103027712 103027795 -18816061 + PB1D10 SINE Alu 5 80 -37 1 1371 392 314 49 14 chr11 103028020 103028162 -18815694 - ID_B1 SINE B4 -3 221 75 1 1371 393 241 0 0 chr11 103028181 103028260 -18815596 - B4A SINE B4 0 292 214 1 1371 249 350 93 28 chr11 103028255 103028286 -18815570 - B3A SINE B2 0 198 5 1 1371 449 313 60 7 chr11 103028286 103028437 -18815419 - RSINE1 SINE B4 -1 164 6 1 1371 1422 39 39 16 chr11 103028469 103028651 -18815205 + B2_Mm2 SINE B2 1 186 -9 1 1371 867 207 34 0 chr11 103028651 103028824 -18815032 - B3 SINE B2 -10 206 28 1 1371 785 239 0 0 chr11 103028854 103028992 -18814864 - B1_Mur1 SINE Alu -10 139 2 1 1371 1183 41 0 39 chr11 103029189 103029342 -18814514 - B1_Mus2 SINE Alu 0 147 1 1 1371 1293 40 0 22 chr11 103029456 103029635 -18814221 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 1 1371 945 36 9 22 chr11 103029643 103029787 -18814069 - B2_Mm2 SINE B2 -61 155 3 1 1371 223 273 0 0 chr11 103029807 103029862 -18813994 - PB1D10 SINE Alu -46 71 17 1 1371 356 262 0 36 chr11 103029890 103029973 -18813883 - ID4_ SINE ID 0 83 4 1 1371 243 327 18 9 chr11 103030209 103030320 -18813536 - Charlie19a DNA Charlie -5 381 270 1 1371 200 258 16 31 chr11 103030659 103030723 -18813133 + L2b LINE L2 3309 3371 -4 1 1371 180 238 24 0 chr11 103031359 103031401 -18812455 + MIR SINE MIR 58 100 -108 1 1371 25 90 0 0 chr11 103032213 103032280 -18811576 + GC_rich Low_complexity Low_complexity 1 67 0 1 1371 221 232 90 79 chr11 103036059 103036148 -18807708 + MIRb SINE MIR 89 178 -90 1 1371 1118 82 7 0 chr11 103036710 103036857 -18806999 + B1_Mus1 SINE Alu 1 148 0 1 1371 366 249 48 35 chr11 103036891 103037054 -18806802 + MIR SINE MIR 62 218 -50 1 1371 267 31 0 0 chr11 103037090 103037122 -18806734 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1371 779 113 0 0 chr11 103037831 103037946 -18805910 - B1_Mus1 SINE Alu -8 140 26 1 1371 225 241 137 84 chr11 103038307 103038461 -18805395 - MIRc SINE MIR -86 182 23 1 1371 185 213 0 41 chr11 103040637 103040686 -18803170 + MIR SINE MIR 85 131 -77 1 1371 382 167 15 0 chr11 103041144 103041210 -18802646 - ID4_ SINE ID -13 70 4 1 1371 448 198 15 146 chr11 103041224 103041354 -18802502 - PB1D10 SINE Alu 0 117 5 1 1371 186 43 0 0 chr11 103042358 103042381 -18801475 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1371 189 0 0 0 chr11 103042381 103042401 -18801455 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1371 234 0 0 0 chr11 103042987 103043013 -18800843 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1371 584 200 43 0 chr11 103043692 103043807 -18800049 + PB1D9 SINE Alu 1 120 0 1 1371 450 267 43 20 chr11 103044611 103044767 -18799089 - B4A SINE B4 0 165 3 1 1371 723 144 0 0 chr11 103044775 103044900 -18798956 + (TA)n Simple_repeat Simple_repeat 1 125 0 1 1371 261 119 0 0 chr11 103044921 103044963 -18798893 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1371 365 194 0 15 chr11 103044967 103045035 -18798821 - ID4_ SINE ID -14 69 3 1 1371 995 108 11 22 chr11 103045061 103045241 -18798615 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1 1371 726 233 126 19 chr11 103045819 103046024 -18797832 + B4 SINE B4 1 227 -65 1 1371 535 291 51 0 chr11 103046024 103046182 -18797674 + B4A SINE B4 1 166 -126 1 1371 255 59 0 0 chr11 103046236 103046270 -18797586 + ID_B1 SINE B4 180 213 -11 1 1371 561 250 45 25 chr11 103046516 103046674 -18797182 - ID_B1 SINE B4 -47 245 82 1 1371 350 181 71 79 chr11 103047367 103047493 -18796363 - RMER30 DNA MER1_type -76 126 2 1 1371 749 115 15 44 chr11 103048224 103048360 -18795496 - URR1B DNA MER1_type 0 225 94 1 1371 590 293 84 26 chr11 103048416 103048689 -18795167 + B4A SINE B4 2 290 -2 1 1371 1107 113 0 0 chr11 103048722 103048980 -18794876 + (CA)n Simple_repeat Simple_repeat 1 258 0 1 1371 917 151 0 14 chr11 103048997 103049138 -18794718 - B1_Mur2 SINE Alu -8 141 3 1 1371 437 299 24 0 chr11 103049154 103049281 -18794575 + ID_B1 SINE B4 79 208 -16 1 1371 187 324 15 0 chr11 103049368 103049436 -18794420 - L2a LINE L2 0 3426 3358 1 1371 518 264 40 67 chr11 103049466 103049555 -18794301 + B4 SINE B4 2 86 -206 1 1371 409 266 11 0 chr11 103049555 103049649 -18794207 + PB1D9 SINE Alu 2 96 -24 1 1371 1037 195 53 5 chr11 103049688 103049894 -18793962 + B3 SINE B2 1 216 0 1 1371 1177 62 7 0 chr11 103049924 103050070 -18793786 + B1_Mm SINE Alu 1 147 0 1 1371 457 280 68 8 chr11 103050088 103050221 -18793635 + B4 SINE B4 86 226 -66 1 1371 407 243 29 10 chr11 103050229 103050333 -18793523 + B3A SINE B2 47 152 -46 1 1371 873 116 0 14 chr11 103050344 103050484 -18793372 - B1_Mur3 SINE Alu -2 147 10 1 1371 306 257 14 41 chr11 103050569 103050642 -18793214 + B4 SINE B4 222 292 0 1 1371 946 154 0 7 chr11 103050744 103050894 -18792962 + B1_Mur4 SINE Alu 2 150 0 1 1371 317 342 26 0 chr11 103051787 103051816 -18792040 + ID SINE ID 50 81 -143 1 1371 324 308 34 3 chr11 103051816 103051953 -18791903 + PB1D10 SINE Alu 1 149 0 1 1371 743 227 56 70 chr11 103052506 103052719 -18791137 + B3 SINE B2 2 211 -5 1 1371 735 213 0 28 chr11 103052756 103052901 -18790955 + B1_Mur4 SINE Alu 2 142 -8 1 1371 405 0 0 0 chr11 103052921 103052966 -18790890 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1371 241 333 0 0 chr11 103052966 103053026 -18790830 + polypurine Low_complexity Low_complexity 5 64 0 1 1371 339 289 35 9 chr11 103053034 103053149 -18790707 + L1MB7 LINE L1 5927 6044 -140 1 1371 204 163 0 0 chr11 103054782 103054825 -18789031 + (CCA)n Simple_repeat Simple_repeat 2 44 0 1 1371 573 187 23 39 chr11 103059193 103059321 -18784535 - B1F2 SINE Alu -21 128 3 1 1371 621 0 0 0 chr11 103059355 103059424 -18784432 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1371 411 209 74 61 chr11 103063390 103063538 -18780318 + L1MC1 LINE L1 2747 2896 -3250 1 1371 992 151 0 6 chr11 103063636 103063816 -18780040 + GA-rich Low_complexity Low_complexity 2 180 0 1 1371 230 245 161 42 chr11 103063842 103063878 -18779978 + B1_Mus1 SINE Alu 2 143 -3 1 1371 429 233 0 0 chr11 103063878 103063964 -18779892 + ID_B1 SINE B4 135 220 -4 1 1371 1157 130 54 0 chr11 103063966 103064151 -18779705 + B2_Mm2 SINE B2 1 195 0 1 1371 1201 275 149 21 chr11 103064174 103064469 -18779387 + L1MC1 LINE L1 2923 3232 -2914 1 1371 584 276 43 43 chr11 103064469 103064632 -18779224 + RSINE1 SINE B4 3 165 0 1 1371 1201 275 149 21 chr11 103064632 103065052 -18778804 + L1MC1 LINE L1 3233 3729 -2417 1 1371 987 129 0 7 chr11 103065147 103065295 -18778561 - B1_Mus1 SINE Alu 0 148 2 1 1371 474 172 11 0 chr11 103065302 103065389 -18778467 + PB1D9 SINE Alu 28 115 -5 1 1371 912 233 23 0 chr11 103065425 103065597 -18778259 - B3A SINE B2 -19 179 4 1 1371 409 305 8 23 chr11 103065612 103065652 -18778204 + L1MD LINE L1 3663 3702 -2444 1 1371 1240 55 0 0 chr11 103065652 103065798 -18778058 + B1_Mm SINE Alu 1 146 -1 1 1371 409 305 8 23 chr11 103065798 103065888 -18777968 + L1MD LINE L1 3703 3791 -2355 1 1371 771 192 7 33 chr11 103065938 103066089 -18777767 + B1_Mur2 SINE Alu 3 149 0 1 1371 366 235 28 95 chr11 103066097 103066180 -18777676 + L1MC1 LINE L1 5160 5238 -908 1 1371 4731 58 22 2 chr11 103066180 103066766 -18777090 + L1_Mus1 LINE L1 5970 6567 0 1 1371 1540 272 101 85 chr11 103066766 103067827 -18776029 + L1MC1 LINE L1 5239 6317 -16 1 1371 358 113 0 75 chr11 103067836 103067903 -18775953 - ID_B1 SINE B4 0 224 163 1 1371 663 207 7 62 chr11 103067906 103068050 -18775806 - B1_Mur1 SINE Alu -11 138 3 1 1371 383 215 13 0 chr11 103068054 103068133 -18775723 - ID_B1 SINE B4 -63 161 82 1 1371 23 0 0 0 chr11 103068141 103068164 -18775692 + AT_rich Low_complexity Low_complexity 1 23 0 1 1371 370 252 78 0 chr11 103068392 103068495 -18775361 + PB1D10 SINE Alu 2 112 -5 1 1371 1085 103 62 6 chr11 103068496 103068672 -18775184 + B2_Mm2 SINE B2 9 194 -1 1 1371 306 284 77 19 chr11 103069092 103069196 -18774660 + HAL1-3A_ME LINE L1 1221 1330 -1528 1 1371 474 280 0 0 chr11 103069245 103069352 -18774504 + PB1D10 SINE Alu 3 109 -8 1 1371 192 77 0 0 chr11 103071154 103071180 -18772676 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1 1371 728 269 68 60 chr11 103071357 103071622 -18772234 - B4A SINE B4 0 292 26 1 1371 185 122 49 0 chr11 103072174 103072215 -18771641 + CT-rich Low_complexity Low_complexity 2 44 0 2 1371 210 71 0 0 chr11 103073793 103073821 -18770035 + (CAT)n Simple_repeat Simple_repeat 2 29 0 2 1371 405 290 0 0 chr11 103073829 103073922 -18769934 - B1_Mur2 SINE Alu -55 94 2 2 1371 507 107 0 0 chr11 103073927 103074002 -18769854 + (CAT)n Simple_repeat Simple_repeat 2 76 0 2 1371 692 197 22 29 chr11 103074003 103074139 -18769717 - B1_Mur2 SINE Alu -11 138 4 2 1371 261 83 0 0 chr11 103074139 103074175 -18769681 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 1371 1179 76 0 0 chr11 103074175 103074320 -18769536 - B1_Mus2 SINE Alu -2 145 1 2 1371 330 281 98 35 chr11 103074346 103074519 -18769337 - B2_Mm2 SINE B2 -11 184 1 2 1371 448 252 31 31 chr11 103074520 103074647 -18769209 - B3 SINE B2 -89 127 1 2 1371 808 191 0 7 chr11 103074661 103074798 -18769058 - B1_Mur1 SINE Alu -11 138 3 2 1371 325 291 131 22 chr11 103074816 103074999 -18768857 - L1MC LINE L1 -3454 2692 2490 2 1371 22 0 0 0 chr11 103075123 103075145 -18768711 + AT_rich Low_complexity Low_complexity 1 22 0 2 1371 349 266 43 121 chr11 103075146 103075287 -18768569 - B3A SINE B2 -2 196 67 2 1371 237 307 48 38 chr11 103075353 103075367 -18768489 - B1_Mur4 SINE Alu -22 128 23 2 1371 396 264 11 0 chr11 103075367 103075458 -18768398 - ID_B1 SINE B4 -30 194 103 2 1371 826 267 60 8 chr11 103075597 103075831 -18768025 + Lx5 LINE L1 6805 7050 0 2 1371 450 328 24 35 chr11 103075864 103076054 -18767802 - ID_B1 SINE B4 -7 217 39 2 1371 340 158 26 0 chr11 103076057 103076133 -18767723 - L1MEc LINE L1 -3944 2456 2379 2 1371 499 254 26 116 chr11 103076476 103076743 -18767113 - CYRA11_Mm Unknown Y-chromosome -203 414 172 2 1371 1149 168 0 27 chr11 103076524 103076744 -18767112 + URR1B DNA MER1_type 12 225 0 2 1371 697 289 175 0 chr11 103077733 103077979 -18765877 - B4 SINE B4 -2 290 2 2 1371 431 300 81 60 chr11 103078165 103078449 -18765407 - B4A SINE B4 -1 291 2 2 1371 821 148 78 0 chr11 103078479 103078621 -18765235 - B2_Mm2 SINE B2 -42 153 1 2 1371 707 146 0 24 chr11 103078734 103078860 -18764996 - B1_Mur3 SINE Alu 0 149 27 2 1371 276 30 0 0 chr11 103079158 103079191 -18764665 + (CACCG)n Simple_repeat Simple_repeat 4 36 0 2 1371 299 296 35 44 chr11 103080189 103080302 -18763554 - RSINE1 SINE B4 -4 161 50 2 1371 308 331 14 75 chr11 103080336 103080355 -18763501 + ID_B1 SINE B4 62 199 -25 2 1371 528 225 8 62 chr11 103080355 103080483 -18763373 + B1_Mur2 SINE Alu 1 121 -28 2 1371 333 242 0 0 chr11 103080506 103080572 -18763284 - ID_B1 SINE B4 0 224 159 2 1371 319 250 170 0 chr11 103080572 103080606 -18763250 - PB1D10 SINE Alu 0 117 1 2 1371 361 193 74 37 chr11 103083277 103083384 -18760472 - PB1D9 SINE Alu -1 119 1 2 1371 1226 68 0 0 chr11 103083455 103083603 -18760253 + B1_Mus1 SINE Alu 1 148 0 2 1371 234 152 0 0 chr11 103083606 103083665 -18760191 + A-rich Low_complexity Low_complexity 1 59 0 2 1371 288 192 118 40 chr11 103083722 103083798 -18760058 + ID4 SINE ID 2 83 0 2 1371 306 0 0 0 chr11 103083980 103084014 -18759842 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1371 1219 49 0 0 chr11 103084042 103084186 -18759670 - B1_Mus1 SINE Alu -1 147 4 2 1371 864 131 43 14 chr11 103084245 103084384 -18759472 - B1_Mur4 SINE Alu -5 145 3 2 1371 180 111 0 0 chr11 103084415 103084442 -18759414 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2 1371 1222 61 0 0 chr11 103084442 103084589 -18759267 - B1_Mus1 SINE Alu 0 148 2 2 1371 327 49 0 0 chr11 103085886 103085927 -18757929 + (TTAGGG)n Simple_repeat Simple_repeat 6 46 0 2 1371 777 264 12 67 chr11 103085972 103086267 -18757589 - RMER19B LTR ERVK -663 239 1 2 1371 548 275 32 53 chr11 103087029 103087217 -18756639 - B3A SINE B2 -14 184 1 2 1371 248 297 78 19 chr11 103087298 103087401 -18756455 - PB1D10 SINE Alu 0 117 9 2 1371 438 20 0 0 chr11 103087423 103087474 -18756382 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1371 416 219 135 0 chr11 103087475 103087571 -18756285 - PB1D9 SINE Alu -9 111 3 2 1371 22 35 0 0 chr11 103087574 103087603 -18756253 + AT_rich Low_complexity Low_complexity 1 29 0 2 1371 249 271 155 37 chr11 103087989 103088150 -18755706 - L1M5 LINE L1 -604 5590 5411 2 1371 485 308 24 49 chr11 103089118 103089282 -18754574 - RSINE1 SINE B4 0 165 6 2 1371 960 157 7 0 chr11 103089295 103089442 -18754414 - B1_Mur3 SINE Alu -1 148 1 2 1371 549 224 35 0 chr11 103089445 103089561 -18754295 - PB1D7 SINE Alu 0 120 1 2 1371 326 278 0 0 chr11 103089782 103089854 -18754002 - ID4_ SINE ID 0 83 12 2 1371 403 213 0 0 chr11 103089874 103089949 -18753907 - PB1D10 SINE Alu -5 112 38 2 1371 960 104 37 0 chr11 103090064 103090198 -18753658 - B1_Mus1 SINE Alu -5 143 5 2 1371 512 272 52 39 chr11 103090198 103090351 -18753505 - ID_B1 SINE B4 -67 157 3 2 1371 803 150 63 21 chr11 103090407 103090550 -18753306 + B1_Mur2 SINE Alu 1 149 0 2 1371 217 269 11 21 chr11 103090702 103090797 -18753059 + G-rich Low_complexity Low_complexity 4 97 0 2 1371 304 232 135 34 chr11 103090894 103090983 -18752873 + PB1D10 SINE Alu 23 120 0 2 1371 926 161 31 31 chr11 103091009 103091201 -18752655 + B2_Mm2 SINE B2 3 194 -1 2 1371 528 214 0 10 chr11 103091253 103091357 -18752499 + B1_Mur1 SINE Alu 17 119 -30 2 1371 489 121 0 0 chr11 103091916 103091999 -18751857 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1371 320 285 82 82 chr11 103093104 103093238 -18750618 - PB1D10 SINE Alu -15 134 1 2 1371 777 176 210 0 chr11 103093257 103093433 -18750423 + URR1B DNA MER1_type 1 213 -12 2 1371 1024 22 15 0 chr11 103093430 103093565 -18750291 + B1_Mus2 SINE Alu 11 147 0 2 1371 232 191 16 0 chr11 103093565 103093628 -18750228 + A-rich Low_complexity Low_complexity 3 66 0 2 1371 207 0 0 0 chr11 103093628 103093651 -18750205 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1371 370 206 397 0 chr11 103093671 103093817 -18750039 - B3 SINE B2 -12 204 1 2 1371 293 229 131 30 chr11 103093932 103094031 -18749825 - B4 SINE B4 -182 110 2 2 1371 338 296 35 0 chr11 103095341 103095456 -18748400 + B4A SINE B4 3 121 -171 2 1371 304 235 29 0 chr11 103095494 103095562 -18748294 + ID2 SINE ID 1 70 -13 2 1371 589 99 36 30 chr11 103095566 103095732 -18748124 + (CA)n Simple_repeat Simple_repeat 1 167 0 2 1371 377 20 20 0 chr11 103096280 103096330 -18747526 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1371 222 191 0 0 chr11 103096511 103096553 -18747303 + RSINE1 SINE B4 2 43 -122 2 1371 234 0 0 0 chr11 103098314 103098340 -18745516 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1371 434 284 0 5 chr11 103098668 103098787 -18745069 - PB1D7 SINE Alu -22 127 14 2 1371 831 156 30 30 chr11 103099155 103099320 -18744536 + B2_Mm2 SINE B2 1 165 -30 2 1371 228 312 171 75 chr11 103099770 103099830 -18744026 + ORR1E LTR MaLR 86 137 -222 2 1371 240 111 0 0 chr11 103099830 103099866 -18743990 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1371 228 312 171 75 chr11 103099866 103100044 -18743812 + ORR1E LTR MaLR 138 347 -12 2 1371 806 63 32 0 chr11 103103794 103103920 -18739936 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1371 805 161 28 13 chr11 103104076 103104260 -18739596 + B3 SINE B2 1 189 -6 2 1371 476 261 16 65 chr11 103104268 103104391 -18739465 + Lx8 LINE L1 7209 7325 -148 2 1371 758 210 85 16 chr11 103104474 103104663 -18739193 + B3 SINE B2 8 209 -7 2 1371 30 0 0 0 chr11 103104675 103104705 -18739151 + AT_rich Low_complexity Low_complexity 1 30 0 2 1371 736 203 80 0 chr11 103104708 103104846 -18739010 - B1_Mur4 SINE Alu 0 150 2 2 1371 707 147 79 29 chr11 103105792 103105932 -18737924 - B1_Mus2 SINE Alu 0 147 1 2 1371 337 307 0 0 chr11 103105961 103106036 -18737820 - ID4_ SINE ID -6 77 3 2 1371 686 278 80 5 chr11 103106055 103106243 -18737613 - B3 SINE B2 -13 203 2 2 1371 1997 67 26 4 chr11 103106636 103106904 -18736952 + L1_Mus2 LINE L1 6293 6566 0 2 1371 253 324 63 49 chr11 103107183 103107326 -18736530 - MIR3 SINE MIR -26 182 38 2 1371 696 174 120 5 chr11 103108505 103108705 -18735151 + Lx4B LINE L1 6724 7041 -17 2 1371 379 0 39 0 chr11 103108709 103108760 -18735096 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1371 263 279 0 68 chr11 103109095 103109168 -18734688 - ID4_ SINE ID -14 69 2 2 1371 484 328 8 0 chr11 103109197 103109319 -18734537 + RSINE1 SINE B4 38 160 -5 2 1371 625 257 12 11 chr11 103109449 103109643 -18734213 - B3A SINE B2 -11 182 1 2 1371 978 232 43 5 chr11 103109655 103109863 -18733993 - B3 SINE B2 0 216 1 2 1371 370 268 46 79 chr11 103111461 103111668 -18732188 - MIRb SINE MIR -38 230 21 2 1371 423 316 40 25 chr11 103111981 103112179 -18731677 + L1MEg LINE L1 1414 1614 -4470 2 1371 668 226 38 6 chr11 103112184 103112344 -18731512 + B3 SINE B2 1 165 -51 2 1371 344 71 18 0 chr11 103112344 103112400 -18731456 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1371 320 297 56 71 chr11 103112400 103112435 -18731421 + B2_Mm1t SINE B2 156 193 0 2 1371 1189 28 0 7 chr11 103112538 103112681 -18731175 + B2_Mm2 SINE B2 4 145 -50 2 1371 198 0 0 0 chr11 103112682 103112704 -18731152 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 3 1371 367 152 12 12 chr11 103112709 103112789 -18731067 + GA-rich Low_complexity Low_complexity 1 80 0 3 1371 1036 135 0 7 chr11 103112848 103112997 -18730859 + B1_Mus1 SINE Alu 1 148 0 3 1371 26 93 0 0 chr11 103113139 103113214 -18730642 + AT_rich Low_complexity Low_complexity 1 75 0 3 1371 194 119 48 0 chr11 103113317 103113359 -18730497 + (CATA)n Simple_repeat Simple_repeat 2 45 0 3 1371 214 316 111 62 chr11 103113613 103113920 -18729936 - L2b LINE L2 -32 3343 3022 3 1371 313 188 100 0 chr11 103113975 103114055 -18729801 + RSINE1 SINE B4 76 163 -2 3 1371 1053 101 0 0 chr11 103115540 103115678 -18728178 + B1_Mus2 SINE Alu 1 138 -9 3 1371 234 0 0 0 chr11 103115678 103115704 -18728152 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1371 498 194 384 25 chr11 103115763 103115922 -18727934 + B3 SINE B2 1 216 0 3 1371 903 268 20 15 chr11 103115997 103116198 -18727658 - B3 SINE B2 -9 207 6 3 1371 24 0 0 0 chr11 103116317 103116341 -18727515 + AT_rich Low_complexity Low_complexity 1 24 0 3 1371 243 0 0 0 chr11 103116402 103116429 -18727427 + (CAA)n Simple_repeat Simple_repeat 3 29 0 3 1371 688 159 5 5 chr11 103116858 103117078 -18726778 + (CA)n Simple_repeat Simple_repeat 1 220 0 3 1371 381 162 0 0 chr11 103117870 103117938 -18725918 + GA-rich Low_complexity Low_complexity 2 69 0 3 1371 220 312 78 9 chr11 103118408 103118522 -18725334 - MIRc SINE MIR -134 134 8 3 1371 589 144 103 0 chr11 103119327 103119424 -18724432 - PB1D10 SINE Alu 0 117 11 3 1371 342 257 81 54 chr11 103119338 103119486 -18724370 - MT2B2 LTR ERVL -322 262 111 3 1371 316 292 0 0 chr11 103119434 103119506 -18724350 - Tigger14a DNA MER2_type -172 152 81 3 1371 599 347 46 0 chr11 103120794 103121013 -18722843 - Tigger5 DNA MER2_type -2167 239 11 3 1371 663 235 0 0 chr11 103121092 103121207 -18722649 + B1F1 SINE Alu 1 115 -34 3 1371 281 312 0 0 chr11 103121224 103121288 -18722568 + RSINE1 SINE B4 83 146 -19 3 1371 504 0 0 0 chr11 103121302 103121358 -18722498 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1371 482 275 81 0 chr11 103122559 103122708 -18721148 - B4 SINE B4 -131 161 1 3 1371 768 129 9 0 chr11 103122723 103122839 -18721017 - B1_Mur2 SINE Alu 0 149 33 3 1371 239 277 13 145 chr11 103122744 103122896 -18720960 - RLTR25B LTR ERVK -508 520 389 3 1371 257 27 0 51 chr11 103122898 103122937 -18720919 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1371 760 294 0 0 chr11 103124591 103124751 -18719105 + RSINE1 SINE B4 2 161 -4 3 1371 243 88 0 0 chr11 103124770 103124804 -18719052 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 3 1371 199 309 14 29 chr11 103125124 103125194 -18718662 - MIRb SINE MIR -156 112 44 3 1371 215 290 32 16 chr11 103125246 103125309 -18718547 + MIR3 SINE MIR 93 156 -52 3 1371 189 0 0 0 chr11 103126267 103126288 -18717568 + (TCTG)n Simple_repeat Simple_repeat 1 21 0 3 1371 24 53 0 0 chr11 103126439 103126477 -18717379 + AT_rich Low_complexity Low_complexity 1 38 0 3 1371 342 0 0 0 chr11 103126875 103126913 -18716943 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1371 517 189 18 45 chr11 103127169 103127280 -18716576 - PB1D10 SINE Alu -9 108 1 3 1371 225 0 0 0 chr11 103127812 103127837 -18716019 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1371 215 266 0 15 chr11 103128715 103128780 -18715076 + C-rich Low_complexity Low_complexity 4 67 0 3 1371 381 250 29 39 chr11 103129927 103130031 -18713825 + B1F1 SINE Alu 31 133 -16 3 1371 287 306 0 14 chr11 103131108 103131181 -18712675 - ID4 SINE ID 0 83 12 3 1371 282 250 124 10 chr11 103131311 103131408 -18712448 - B1F1 SINE Alu -41 108 1 3 1371 784 229 5 14 chr11 103131577 103131726 -18712130 + ID_B1 SINE B4 84 224 -68 3 1371 782 280 0 45 chr11 103132614 103132838 -18711018 + ID_B1 SINE B4 5 218 -6 3 1371 200 163 68 23 chr11 103133218 103133262 -18710594 - L2a LINE L2 -82 3344 3299 3 1371 570 227 9 0 chr11 103133854 103133964 -18709892 - PB1D9 SINE Alu -9 111 1 3 1371 369 227 0 0 chr11 103134033 103134099 -18709757 - ID SINE ID -151 73 8 3 1371 197 227 22 22 chr11 103134344 103134389 -18709467 - L2a LINE L2 -222 3165 3121 3 1371 220 268 70 0 chr11 103134495 103134566 -18709290 - L2a LINE L2 -813 2606 2531 3 1371 783 59 2 3 chr11 103134646 103134760 -18709096 - B1_Mm SINE Alu -7 113 1 3 1371 429 81 0 0 chr11 103135309 103135371 -18708485 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 3 1371 712 177 76 8 chr11 103135413 103135544 -18708312 - B1_Mur2 SINE Alu -5 144 5 3 1371 1237 61 0 0 chr11 103135605 103135752 -18708104 + B1_Mus1 SINE Alu 1 147 -1 3 1371 28 0 0 0 chr11 103135777 103135805 -18708051 + AT_rich Low_complexity Low_complexity 1 28 0 3 1371 2385 83 0 74 chr11 103135827 103136179 -18707677 - ORR1A2 LTR MaLR 0 327 2 3 1371 590 325 12 6 chr11 103136489 103136659 -18707197 + ID_B1 SINE B4 54 224 0 3 1371 792 218 101 0 chr11 103136663 103136842 -18707014 + B3A SINE B2 1 197 -1 3 1371 978 285 64 18 chr11 103136862 103137113 -18706743 + B4A SINE B4 8 270 -22 3 1371 378 0 0 0 chr11 103137114 103137156 -18706700 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1371 324 0 0 0 chr11 103138084 103138120 -18705736 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1371 450 0 0 0 chr11 103138120 103138169 -18705687 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1371 439 233 216 0 chr11 103138169 103138285 -18705571 - RSINE1 SINE B4 -22 143 3 3 1371 363 121 0 0 chr11 103138295 103138353 -18705503 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 3 1371 592 138 91 9 chr11 103138358 103138468 -18705388 + PB1D9 SINE Alu 2 120 0 3 1371 696 231 45 6 chr11 103138493 103138650 -18705206 + RSINE1 SINE B4 1 163 -2 3 1371 240 228 35 92 chr11 103139068 103139155 -18704701 - ID4_ SINE ID 0 83 2 3 1371 430 250 43 26 chr11 103139161 103139276 -18704580 - PB1D10 SINE Alu 0 117 1 3 1371 995 212 55 10 chr11 103139310 103139510 -18704346 - B3 SINE B2 0 216 8 3 1371 307 266 0 12 chr11 103139550 103139630 -18704226 - PB1D10 SINE Alu -38 79 1 3 1371 1155 209 5 0 chr11 103139903 103140118 -18703738 + B3 SINE B2 1 216 0 3 1371 1256 48 0 0 chr11 103140293 103140439 -18703417 - B1_Mus2 SINE Alu -1 146 1 3 1371 453 234 25 59 chr11 103141234 103141352 -18702504 - PB1D10 SINE Alu -2 115 2 3 1371 226 208 0 20 chr11 103141487 103141536 -18702320 - Charlie1b DNA MER1_type -46 477 430 3 1371 515 269 44 15 chr11 103141581 103141717 -18702139 - ID_B1 SINE B4 -7 217 78 3 1371 992 175 73 24 chr11 103141731 103141936 -18701920 - B3 SINE B2 0 216 2 3 1371 321 331 115 0 chr11 103141945 103142093 -18701763 - Charlie1b DNA MER1_type -219 304 140 3 1371 354 336 8 8 chr11 103142239 103142356 -18701500 - MIRb SINE MIR -100 168 52 3 1371 327 322 153 48 chr11 103144295 103144504 -18699352 - L2b LINE L2 0 3375 3145 3 1371 537 311 51 10 chr11 103144505 103144700 -18699156 - LTR16A LTR ERVL -6 445 243 3 1371 276 269 0 15 chr11 103144732 103144800 -18699056 - LTR16A LTR ERVL -293 158 92 3 1371 180 0 0 0 chr11 103145408 103145428 -18698428 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1371 672 248 21 0 chr11 103145434 103145579 -18698277 + B1_Mur1 SINE Alu 1 148 -1 3 1371 533 218 0 29 chr11 103145636 103145740 -18698116 + PB1D10 SINE Alu 17 117 0 3 1371 317 266 11 49 chr11 103145874 103146014 -18697842 - PB1D10 SINE Alu -1 148 17 3 1371 397 278 31 10 chr11 103146377 103146475 -18697381 - B1F1 SINE Alu -49 100 1 3 1371 293 261 14 0 chr11 103146414 103146483 -18697373 - B4A SINE B4 -146 146 77 3 1371 367 255 47 0 chr11 103146483 103146589 -18697267 - MIR SINE MIR -118 144 34 3 1371 396 0 0 0 chr11 103147551 103147595 -18696261 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1371 343 289 44 11 chr11 103147813 103147904 -18695952 + B4 SINE B4 5 98 -194 3 1371 746 206 14 0 chr11 103147904 103148050 -18695806 + B1_Mur3 SINE Alu 2 149 0 3 1371 1356 69 5 26 chr11 103148064 103148223 -18695633 + B2_Mm1t SINE B2 1 159 -34 3 1371 324 0 0 0 chr11 103148223 103148259 -18695597 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1371 1356 69 5 26 chr11 103148259 103148292 -18695564 + B2_Mm1t SINE B2 160 189 -4 3 1371 788 262 40 53 chr11 103148273 103148499 -18695357 + B4 SINE B4 70 292 0 3 1371 240 167 0 0 chr11 103148504 103148552 -18695304 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1371 719 268 0 19 chr11 103148584 103148740 -18695116 + RSINE1 SINE B4 2 154 -11 3 1371 586 284 0 14 chr11 103149253 103149396 -18694460 - ID_B1 SINE B4 0 224 84 3 1371 270 0 0 0 chr11 103149398 103149428 -18694428 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 3 1371 621 175 0 0 chr11 103149428 103149525 -18694331 - PB1D9 SINE Alu -13 107 11 3 1371 560 263 80 0 chr11 103150425 103150562 -18693294 + B1F SINE Alu 1 148 -1 3 1371 241 310 34 42 chr11 103151101 103151115 -18692741 - YREP_Mm Unknown Unknown -1486 326 314 3 1371 472 279 45 0 chr11 103151115 103151226 -18692630 + PB1D10 SINE Alu 2 117 0 3 1371 21 0 0 0 chr11 103151389 103151410 -18692446 + GC_rich Low_complexity Low_complexity 1 21 0 3 1371 957 129 13 20 chr11 103151610 103151760 -18692096 - B1_Mur4 SINE Alu 0 150 2 3 1371 231 281 145 12 chr11 103151760 103151843 -18692013 - B4A SINE B4 -196 96 3 3 1371 3910 65 4 0 chr11 103151871 103152362 -18691494 - L1_Mus1 LINE L1 0 6567 6075 3 1371 322 317 92 46 chr11 103152484 103152636 -18691220 - MIRb SINE MIR -21 247 89 3 1371 476 239 72 18 chr11 103152730 103152896 -18690960 - MER5B DNA MER1_type -3 175 1 3 1371 621 72 0 0 chr11 103153158 103153241 -18690615 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1372 848 263 82 47 chr11 103154249 103154460 -18689396 + B4A SINE B4 1 217 -75 4 1372 1231 155 14 19 chr11 103154460 103154671 -18689185 + B3 SINE B2 2 211 -5 4 1372 848 263 82 47 chr11 103154671 103154714 -18689142 + B4A SINE B4 218 264 -28 4 1372 26 0 0 0 chr11 103154727 103154753 -18689103 + AT_rich Low_complexity Low_complexity 1 26 0 4 1372 261 180 0 0 chr11 103154996 103155046 -18688810 + GA-rich Low_complexity Low_complexity 3 52 0 4 1372 228 288 119 48 chr11 103155046 103155130 -18688726 + B4A SINE B4 201 290 -2 4 1372 1586 205 93 64 chr11 103155817 103155942 -18687914 + MTD LTR MaLR 1 120 -299 4 1372 906 193 0 0 chr11 103155942 103156092 -18687764 - B1_Mur4 SINE Alu 0 150 1 4 1372 1586 205 93 64 chr11 103156092 103156373 -18687483 + MTD LTR MaLR 121 419 0 4 1372 404 175 69 52 chr11 103156412 103156510 -18687346 - PB1D9 SINE Alu -7 113 16 4 1372 219 351 60 22 chr11 103156533 103156667 -18687189 + MER5A DNA MER1_type 45 183 -6 4 1372 884 254 75 5 chr11 103156752 103156961 -18686895 + B4A SINE B4 4 227 -65 4 1372 869 270 23 19 chr11 103156961 103157176 -18686680 + B3 SINE B2 1 216 0 4 1372 288 0 0 0 chr11 103157188 103157220 -18686636 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1372 809 249 59 10 chr11 103157229 103157432 -18686424 + B3 SINE B2 1 213 -3 4 1372 441 0 0 0 chr11 103157642 103157691 -18686165 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1372 584 83 10 0 chr11 103157691 103157787 -18686069 + (GA)n Simple_repeat Simple_repeat 1 97 0 4 1372 2690 154 82 105 chr11 103157787 103158376 -18685480 + RMER15 LTR ERVL 1 575 0 4 1372 1306 210 95 126 chr11 103158418 103158706 -18685150 + L1MB5 LINE L1 3601 3896 -2250 4 1372 459 0 0 0 chr11 103158706 103158757 -18685099 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1372 1306 210 95 126 chr11 103158757 103159150 -18684706 + L1MB5 LINE L1 3897 4261 -1885 4 1372 202 146 49 0 chr11 103159151 103159192 -18684664 + (CAA)n Simple_repeat Simple_repeat 2 44 0 4 1372 970 160 0 0 chr11 103159192 103159336 -18684520 + B1_Mus1 SINE Alu 1 144 -4 4 1372 330 137 29 19 chr11 103159372 103159476 -18684380 + A-rich Low_complexity Low_complexity 5 109 0 4 1372 570 288 14 48 chr11 103159780 103159926 -18683930 + B4A SINE B4 13 153 -139 4 1372 225 300 22 11 chr11 103159950 103160041 -18683815 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 1372 333 258 84 21 chr11 103160051 103160146 -18683710 + PB1D10 SINE Alu 6 106 -43 4 1372 650 286 14 0 chr11 103160228 103160368 -18683488 + RSINE1 SINE B4 3 144 -21 4 1372 241 82 41 0 chr11 103160378 103160427 -18683429 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1372 231 234 80 18 chr11 103160797 103160910 -18682946 + L1MB5 LINE L1 5188 5307 -839 4 1372 773 232 149 94 chr11 103160910 103160981 -18682875 + B4 SINE B4 2 74 -218 4 1372 221 0 0 33 chr11 103160981 103161011 -18682845 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 4 1372 773 232 149 94 chr11 103161011 103161215 -18682641 + B4 SINE B4 75 292 0 4 1372 479 287 8 30 chr11 103161244 103161426 -18682430 + L1MB5 LINE L1 5290 5465 -699 4 1372 345 47 0 0 chr11 103161754 103161797 -18682059 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1372 412 239 37 0 chr11 103161872 103161981 -18681875 + L1MB5 LINE L1 5802 5914 -260 4 1372 250 275 37 24 chr11 103162002 103162084 -18681772 - ID4_ SINE ID 0 83 1 4 1372 1436 180 156 16 chr11 103162084 103162377 -18681479 + ORR1D1 LTR MaLR 37 374 0 4 1372 296 171 0 79 chr11 103162502 103162578 -18681278 - PB1 SINE Alu -2 125 56 4 1372 1232 206 9 0 chr11 103162755 103162969 -18680887 + B3 SINE B2 1 216 0 4 1372 275 272 27 96 chr11 103163126 103163313 -18680543 - L1ME2z LINE L1 -36 6408 6235 4 1372 232 211 96 0 chr11 103163336 103163388 -18680468 - ID4_ SINE ID -18 65 9 4 1372 1275 89 78 0 chr11 103163434 103163595 -18680261 + B2_Mm2 SINE B2 2 162 -33 4 1372 216 0 0 0 chr11 103163595 103163619 -18680237 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1372 1275 89 78 0 chr11 103163619 103163637 -18680219 + B2_Mm2 SINE B2 163 193 -2 4 1372 225 320 176 22 chr11 103163647 103163960 -18679896 - L1ME2z LINE L1 -305 6139 5779 4 1372 797 294 76 6 chr11 103164046 103164435 -18679421 - L1ME2z LINE L1 -785 5659 5242 4 1372 353 317 29 77 chr11 103164457 103164470 -18679386 - CYRA11_Mm Unknown Y-chromosome -225 392 305 4 1372 1079 131 98 74 chr11 103164470 103164685 -18679171 + URR1A DNA MER1_type 7 226 0 4 1372 353 317 29 77 chr11 103164685 103164703 -18679153 - CYRA11_Mm Unknown Y-chromosome -225 304 159 4 1372 707 280 28 0 chr11 103164783 103164926 -18678930 + RSINE1 SINE B4 4 150 -15 4 1372 264 122 0 0 chr11 103164950 103164991 -18678865 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1372 237 301 51 76 chr11 103165023 103165181 -18678675 - L1ME2z LINE L1 -976 5170 5017 4 1372 253 280 109 10 chr11 103165274 103165305 -18678551 - ID_B1 SINE B4 -107 117 7 4 1372 258 232 29 14 chr11 103165305 103165375 -18678481 - ID4 SINE ID -6 77 7 4 1372 312 316 0 0 chr11 103165375 103165473 -18678383 - L1ME2z LINE L1 -1641 4505 4408 4 1372 478 268 97 9 chr11 103165507 103165620 -18678236 + RSINE1 SINE B4 18 140 -25 4 1372 395 278 157 0 chr11 103165668 103165776 -18678080 + ID_B1 SINE B4 79 203 -21 4 1372 40 67 0 0 chr11 103165792 103165867 -18677989 + AT_rich Low_complexity Low_complexity 1 75 0 4 1372 664 281 72 69 chr11 103166954 103167245 -18676611 + B4A SINE B4 1 292 0 4 1372 212 239 22 0 chr11 103167943 103167989 -18675867 + C-rich Low_complexity Low_complexity 4 50 0 4 1372 343 319 71 21 chr11 103168189 103168330 -18675526 - MIR SINE MIR -95 167 20 4 1372 4354 137 108 72 chr11 103168847 103169135 -18674721 + RMER19B LTR ERVK 1 240 -662 4 1372 405 0 0 0 chr11 103169135 103169180 -18674676 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1372 4354 137 108 72 chr11 103169180 103169664 -18674192 + RMER19B LTR ERVK 241 777 -125 4 1372 342 0 0 0 chr11 103169664 103169702 -18674154 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1372 4354 137 108 72 chr11 103169702 103169799 -18674057 + RMER19B LTR ERVK 778 900 -2 4 1372 354 329 42 0 chr11 103170222 103170365 -18673491 + B1F SINE Alu 1 149 0 4 1372 726 107 214 0 chr11 103170408 103170520 -18673336 + B1_Mur3 SINE Alu 1 136 -13 4 1372 253 0 54 0 chr11 103170523 103170560 -18673296 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1372 477 278 112 43 chr11 103170565 103170843 -18673013 + L1M4 LINE L1 5300 5596 -588 4 1372 433 194 0 0 chr11 103170854 103170926 -18672930 + ID4_ SINE ID 1 72 -11 4 1372 285 254 142 39 chr11 103171001 103171206 -18672650 + L1M4 LINE L1 5601 5826 -338 4 1372 1250 120 0 42 chr11 103171628 103171819 -18672037 - B2_Mm2 SINE B2 -12 183 1 4 1372 282 29 0 0 chr11 103171862 103171897 -18671959 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1372 288 279 0 0 chr11 103171982 103172050 -18671806 - L1MB3 LINE L1 -201 5982 5915 4 1372 1440 86 11 5 chr11 103172150 103172338 -18671518 - B2_Mm2 SINE B2 -6 189 1 4 1372 512 207 229 28 chr11 103172372 103172551 -18671305 - B3 SINE B2 -1 215 1 4 1372 1062 144 0 0 chr11 103172653 103172833 -18671023 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 4 1372 465 260 114 0 chr11 103172849 103172972 -18670884 - B1F SINE Alu -8 141 5 4 1372 396 250 39 29 chr11 103173131 103173234 -18670622 + PB1D10 SINE Alu 14 117 0 4 1372 845 176 0 12 chr11 103173937 103174109 -18669747 + CT-rich Low_complexity Low_complexity 4 173 0 4 1372 381 317 80 73 chr11 103174217 103174506 -18669350 - B4A SINE B4 0 292 2 4 1372 236 254 0 0 chr11 103175004 103175059 -18668797 + PB1D9 SINE Alu 58 112 -8 4 1372 444 290 0 8 chr11 103175075 103175200 -18668656 + ID_B1 SINE B4 82 205 -19 4 1372 357 280 51 43 chr11 103175299 103175437 -18668419 + MIR SINE MIR 43 181 -81 4 1372 1494 33 0 0 chr11 103175948 103176128 -18667728 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1372 345 290 49 42 chr11 103176160 103176304 -18667552 - L2a LINE L2 0 3426 3282 4 1372 291 281 171 40 chr11 103176682 103176834 -18667022 - MIR3 SINE MIR -18 190 19 4 1372 938 232 57 30 chr11 103177410 103177672 -18666184 + B4 SINE B4 20 288 -4 4 1372 1146 72 0 0 chr11 103177954 103178092 -18665764 - B1_Mus1 SINE Alu -10 138 1 4 1372 259 288 71 104 chr11 103178095 103178277 -18665579 + MLT1G3 LTR MaLR 190 365 -230 4 1372 424 294 28 0 chr11 103178832 103178941 -18664915 - PB1D10 SINE Alu -5 112 1 4 1372 249 309 65 9 chr11 103180396 103180504 -18663352 + L2b LINE L2 3257 3370 -5 4 1372 276 191 0 0 chr11 103180648 103180695 -18663161 + ID4 SINE ID 28 74 -9 4 1372 257 218 0 68 chr11 103180695 103180707 -18663149 + ID SINE ID 29 83 -141 4 1372 351 0 0 0 chr11 103181097 103181136 -18662720 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1372 330 26 0 0 chr11 103181136 103181174 -18662682 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1372 568 197 137 16 chr11 103181174 103181298 -18662558 - B1_Mur3 SINE Alu -10 139 1 4 1372 565 236 68 54 chr11 103181343 103181491 -18662365 - RSINE1 SINE B4 0 165 16 4 1372 270 339 23 31 chr11 103181973 103182101 -18661755 + B1F1 SINE Alu 1 127 -22 4 1372 534 176 0 0 chr11 103182311 103182430 -18661426 + (TG)n Simple_repeat Simple_repeat 1 119 0 4 1372 283 329 0 83 chr11 103182436 103182496 -18661360 - B1_Mur3 SINE Alu -1 148 6 4 1372 400 281 10 0 chr11 103182496 103182592 -18661264 - B4 SINE B4 -105 187 91 4 1372 237 212 14 70 chr11 103182643 103182714 -18661142 - L1ME3A LINE L1 -231 5942 5876 4 1372 313 382 7 7 chr11 103182727 103182880 -18660976 - L1ME3A LINE L1 -354 5808 5656 4 1372 573 244 0 0 chr11 103182929 103183089 -18660767 + T-rich Low_complexity Low_complexity 1 160 0 4 1372 1214 75 0 0 chr11 103183089 103183236 -18660620 - B1_Mus2 SINE Alu 0 147 1 4 1372 398 225 7 0 chr11 103183265 103183407 -18660449 + (CA)n Simple_repeat Simple_repeat 1 143 0 4 1372 368 291 167 25 chr11 103183407 103183611 -18660245 - L1ME3A LINE L1 -894 5550 5318 4 1372 3560 201 144 12 chr11 103183611 103184098 -18659758 - RMER17B LTR ERVK 0 958 435 4 1372 957 34 0 0 chr11 103184098 103184215 -18659641 + (GGGAGA)n Simple_repeat Simple_repeat 6 122 0 4 1372 3560 201 144 12 chr11 103184215 103184573 -18659283 - RMER17B LTR ERVK -524 434 3 4 1372 347 313 149 50 chr11 103184573 103184610 -18659246 - L1ME3A LINE L1 -850 5323 5285 4 1372 249 312 88 19 chr11 103184925 103185085 -18658771 - MER113 DNA MER1_type -158 363 193 4 1372 564 264 93 83 chr11 103185085 103185374 -18658482 + B4A SINE B4 1 292 0 4 1372 183 162 0 0 chr11 103185380 103185417 -18658439 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1372 276 176 26 51 chr11 103186824 103186902 -18656954 + G-rich Low_complexity Low_complexity 2 77 0 4 1372 285 287 100 7 chr11 103187084 103187229 -18656627 + L1MD1 LINE L1 5867 6024 -309 4 1372 671 258 71 15 chr11 103187233 103187430 -18656426 + B3 SINE B2 5 212 -4 5 1372 1246 115 10 35 chr11 103187434 103187633 -18656223 + B2_Mm2 SINE B2 2 195 0 5 1372 956 169 0 13 chr11 103187757 103187907 -18655949 - B1_Mur1 SINE Alu 0 149 2 5 1372 261 289 60 30 chr11 103187914 103188014 -18655842 + L1MD1 LINE L1 6045 6147 -212 4 1372 393 253 11 0 chr11 103188138 103188233 -18655623 + B3A SINE B2 87 182 -16 5 1372 459 248 9 9 chr11 103188299 103188405 -18655451 + ID_B1 SINE B4 109 214 -10 5 1372 842 223 120 0 chr11 103189028 103189203 -18654653 + B3A SINE B2 1 196 -2 5 1372 252 86 0 0 chr11 103189298 103189333 -18654523 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1372 459 265 8 8 chr11 103189361 103189479 -18654377 - RSINE1 SINE B4 -45 120 3 5 1372 227 262 33 0 chr11 103189482 103189543 -18654313 - L2a LINE L2 -12 3414 3352 5 1372 198 322 32 65 chr11 103189901 103189994 -18653862 - MIRb SINE MIR -67 201 112 5 1372 425 260 161 54 chr11 103190150 103190280 -18653576 - RSINE1 SINE B4 -16 149 6 5 1372 286 318 36 0 chr11 103190476 103190586 -18653270 - L2a LINE L2 -856 2563 2450 5 1372 290 244 95 24 chr11 103190903 103190987 -18652869 + RSINE1 SINE B4 74 163 -2 5 1372 28 0 0 0 chr11 103190987 103191015 -18652841 + AT_rich Low_complexity Low_complexity 1 28 0 5 1372 462 91 0 0 chr11 103191540 103191617 -18652239 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 5 1372 488 299 105 69 chr11 103191878 103192183 -18651673 + MLT1A LTR MaLR 11 326 -48 5 1372 838 120 0 8 chr11 103192320 103192446 -18651410 + B2_Mm2 SINE B2 1 125 -70 5 1372 234 0 0 0 chr11 103192454 103192480 -18651376 + (CATA)n Simple_repeat Simple_repeat 1 26 0 5 1372 324 0 0 0 chr11 103192495 103192531 -18651325 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 5 1372 522 0 0 0 chr11 103192545 103192603 -18651253 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 1372 248 348 90 0 chr11 103192610 103192625 -18651231 + PB1D10 SINE Alu 1 95 -20 5 1372 357 250 0 0 chr11 103192625 103192697 -18651159 + ID_B1 SINE B4 105 176 -48 5 1372 705 296 86 12 chr11 103192694 103192937 -18650919 + MER115 DNA Tip100 433 693 0 5 1372 247 288 0 111 chr11 103196101 103196191 -18647665 - BC1_Mm scRNA scRNA -71 81 2 5 1372 264 279 0 16 chr11 103196204 103196266 -18647590 + ID2 SINE ID 5 65 -18 5 1372 378 0 0 0 chr11 103196682 103196724 -18647132 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1372 180 0 0 0 chr11 103196724 103196743 -18647113 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1372 764 199 41 159 chr11 103197227 103197472 -18646384 + B3 SINE B2 1 216 0 5 1372 335 320 83 40 chr11 103197556 103197784 -18646072 + L4 LINE RTE 1574 1811 -218 5 1372 444 266 0 0 chr11 103197938 103198239 -18645617 + (TG)n Simple_repeat Simple_repeat 1 301 0 5 1372 955 233 71 85 chr11 103198271 103198566 -18645290 - B4 SINE B4 0 292 2 5 1372 907 75 15 0 chr11 103199150 103199283 -18644573 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 5 1372 550 281 92 0 chr11 103202553 103202706 -18641150 + ID_B1 SINE B4 58 224 0 5 1372 391 100 14 14 chr11 103202881 103202952 -18640904 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1372 1014 208 14 5 chr11 103203067 103203275 -18640581 + B3 SINE B2 1 210 -6 5 1372 236 289 26 13 chr11 103203504 103203581 -18640275 + B4A SINE B4 1 78 -214 5 1372 31 0 0 0 chr11 103203642 103203673 -18640183 + AT_rich Low_complexity Low_complexity 1 31 0 5 1372 315 0 0 0 chr11 103204098 103204133 -18639723 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 5 1372 329 218 128 0 chr11 103204133 103204211 -18639645 - L1M4b LINE L1 -5409 1925 1838 5 1372 872 293 16 62 chr11 103204213 103204519 -18639337 - B4A SINE B4 0 292 1 5 1372 402 260 95 24 chr11 103207392 103207518 -18636338 + B1F SINE Alu 15 149 0 5 1372 457 92 13 13 chr11 103207518 103207595 -18636261 + (GA)n Simple_repeat Simple_repeat 1 77 0 5 1372 323 216 0 8 chr11 103208636 103208753 -18635103 + (CA)n Simple_repeat Simple_repeat 2 117 0 5 1372 316 42 0 111 chr11 103208753 103208807 -18635049 + HAL1-3A_ME LINE L1 1976 2023 -835 5 1372 361 182 33 0 chr11 103208821 103208942 -18634914 + (CAGA)n Simple_repeat Simple_repeat 2 126 0 5 1372 335 24 0 0 chr11 103208943 103208984 -18634872 + HAL1-3A_ME LINE L1 1976 2016 -842 5 1372 385 267 12 0 chr11 103209008 103209094 -18634762 - ID_B1 SINE B4 -133 91 5 5 1372 450 265 26 45 chr11 103209217 103209371 -18634485 + B4 SINE B4 1 151 -141 5 1372 249 185 74 0 chr11 103209742 103209796 -18634060 + tRNA-Ala-GCA tRNA tRNA 2 59 -16 5 1372 510 236 16 39 chr11 103209845 103209929 -18633927 - B1F SINE Alu -1 148 64 5 1372 1330 151 382 0 chr11 103209929 103210233 -18633623 + MTC LTR MaLR 2 421 0 5 1372 510 248 12 43 chr11 103210233 103210290 -18633566 - B1F SINE Alu -57 63 11 5 1372 853 232 23 28 chr11 103211123 103211340 -18632516 - B3 SINE B2 0 216 1 5 1372 315 113 0 40 chr11 103211352 103211426 -18632430 + (TAAA)n Simple_repeat Simple_repeat 3 73 0 5 1372 407 316 33 2 chr11 103211439 103211577 -18632279 + B1F SINE Alu 1 147 -2 5 1372 541 157 37 0 chr11 103211661 103211795 -18632061 + GA-rich Low_complexity Low_complexity 1 139 0 5 1372 183 42 0 0 chr11 103211795 103211819 -18632037 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1372 180 0 0 0 chr11 103212048 103212068 -18631788 + (CAGTG)n Simple_repeat Simple_repeat 2 21 0 5 1372 732 184 21 0 chr11 103212261 103212402 -18631454 + B1_Mur3 SINE Alu 6 149 0 5 1372 230 316 157 9 chr11 103212754 103212773 -18631083 - ID_B1 SINE B4 -2 222 204 5 1372 1429 75 0 16 chr11 103212773 103212962 -18630894 - B2_Mm2 SINE B2 -5 190 5 5 1372 230 316 157 9 chr11 103212962 103213057 -18630799 - ID_B1 SINE B4 -21 203 91 5 1372 365 288 43 0 chr11 103212964 103213069 -18630787 - PB1D10 SINE Alu -40 109 1 5 1372 373 218 162 6 chr11 103213095 103213221 -18630635 - PB1D9 SINE Alu 0 149 4 5 1372 320 73 0 35 chr11 103213335 103213392 -18630464 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1372 1337 108 21 0 chr11 103213449 103213635 -18630221 + B2_Mm1t SINE B2 1 190 -3 5 1372 528 230 21 56 chr11 103213635 103213778 -18630078 + B3A SINE B2 14 151 -47 5 1372 327 105 0 0 chr11 103213783 103213840 -18630016 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1372 1558 285 94 49 chr11 103213855 103214645 -18629211 + L1MA6 LINE L1 5476 6300 0 5 1372 1112 198 56 0 chr11 103214650 103214847 -18629009 + B3 SINE B2 2 209 -7 5 1372 35 0 0 0 chr11 103215064 103215099 -18628757 + AT_rich Low_complexity Low_complexity 1 35 0 5 1372 413 223 44 9 chr11 103215693 103215806 -18628050 - PB1D10 SINE Alu 0 117 1 5 1372 1053 39 0 0 chr11 103216866 103216996 -18626860 + (GGGAGA)n Simple_repeat Simple_repeat 4 133 0 5 1372 459 196 29 19 chr11 103217919 103218023 -18625833 - B1F SINE Alu -25 124 20 5 1372 256 327 6 46 chr11 103219454 103219627 -18624229 + G-rich Low_complexity Low_complexity 3 168 0 5 1372 312 27 0 0 chr11 103219628 103219665 -18624191 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1372 180 0 0 0 chr11 103221154 103221174 -18622682 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 5 1372 307 238 43 106 chr11 103221322 103221463 -18622393 - MER46C DNA MER2_type -67 271 140 5 1372 244 272 218 42 chr11 103222267 103222432 -18621424 + MIR3 SINE MIR 11 204 -4 5 1372 180 111 0 0 chr11 103223170 103223197 -18620659 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1372 180 0 0 0 chr11 103226158 103226178 -18617678 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1372 492 18 0 0 chr11 103226180 103226237 -18617619 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1372 340 323 67 3 chr11 103229801 103229951 -18613905 - MIR SINE MIR -73 189 29 5 1372 541 275 94 15 chr11 103230352 103230555 -18613301 + B4A SINE B4 30 248 -44 5 1372 275 309 102 65 chr11 103231715 103232009 -18611847 + L2b LINE L2 3071 3375 0 5 1372 276 269 80 29 chr11 103232480 103232618 -18611238 - MIRb SINE MIR -112 156 12 5 1372 191 136 44 22 chr11 103232938 103232983 -18610873 - MIRc SINE MIR -128 140 95 5 1372 760 169 7 13 chr11 103234206 103234356 -18609500 + B1_Mur3 SINE Alu 1 149 0 5 1372 26 0 0 0 chr11 103234380 103234406 -18609450 + AT_rich Low_complexity Low_complexity 1 26 0 5 1372 252 311 167 22 chr11 103234409 103234547 -18609309 + RSINE1 SINE B4 8 165 0 5 1372 197 152 0 0 chr11 103234670 103234703 -18609153 - MIRc SINE MIR -121 147 115 5 1372 448 209 0 94 chr11 103235596 103235723 -18608133 - PB1D10 SINE Alu 0 117 3 5 1372 317 215 25 25 chr11 103235776 103235857 -18607999 + PB1D10 SINE Alu 33 113 -4 5 1372 369 280 34 51 chr11 103236914 103237091 -18606765 + MIR SINE MIR 57 230 -32 5 1372 244 233 0 62 chr11 103237170 103237234 -18606622 + B4A SINE B4 84 143 -149 5 1372 473 254 18 0 chr11 103237181 103237291 -18606565 + PB1D10 SINE Alu 6 117 0 5 1372 226 301 48 0 chr11 103237295 103237378 -18606478 + MT2B LTR ERVL 155 241 -360 5 1372 380 228 76 0 chr11 103237305 103237384 -18606472 + PB1D10 SINE Alu 5 89 -28 5 1372 187 341 125 11 chr11 103239007 103239191 -18604665 + L2 LINE L2 1467 1671 -1748 5 1372 185 312 63 18 chr11 103239432 103239543 -18604313 + L2 LINE L2 2212 2327 -1092 5 1372 624 257 0 34 chr11 103240052 103240201 -18603655 + B1F SINE Alu 6 149 0 5 1372 705 230 7 0 chr11 103240210 103240358 -18603498 + B1_Mur1 SINE Alu 1 149 0 5 1372 357 289 0 0 chr11 103240919 103241002 -18602854 + B1_Mur1 SINE Alu 61 143 -6 5 1372 384 77 0 0 chr11 103241398 103241450 -18602406 + (CTGGGG)n Simple_repeat Simple_repeat 3 54 0 5 1372 365 235 114 32 chr11 103241811 103241934 -18601922 - RSINE1 SINE B4 -28 137 5 6 1372 365 221 58 16 chr11 103241936 103242101 -18601755 - L1M4 LINE L1 -393 5490 5350 6 1372 329 307 20 0 chr11 103242147 103242248 -18601608 + MLT1C LTR MaLR 102 204 -263 6 1372 402 235 156 22 chr11 103242210 103242225 -18601631 + B4 SINE B4 73 134 -158 6 1372 495 208 79 0 chr11 103242225 103242326 -18601530 + B1_Mur2 SINE Alu 1 109 -40 6 1372 402 235 156 22 chr11 103242326 103242345 -18601511 + B4 SINE B4 135 225 -67 6 1372 532 298 118 61 chr11 103242338 103242617 -18601239 + MLT1C LTR MaLR 171 465 -2 6 1372 919 272 38 96 chr11 103242619 103242739 -18601117 - L1M4 LINE L1 -858 5288 5193 6 1372 376 280 114 0 chr11 103242739 103242871 -18600985 - B1F SINE Alu -2 147 1 6 1372 919 272 38 96 chr11 103242871 103243148 -18600708 - L1M4 LINE L1 -954 5192 4914 6 1372 373 300 36 9 chr11 103244178 103244289 -18599567 - RSINE1 SINE B4 -49 116 3 6 1372 522 0 0 0 chr11 103244512 103244570 -18599286 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1372 292 290 68 101 chr11 103245009 103245216 -18598640 + L2a LINE L2 3156 3406 -20 6 1372 481 303 0 16 chr11 103245926 103246050 -18597806 + RSINE1 SINE B4 43 164 -1 6 1372 228 265 113 75 chr11 103245936 103246095 -18597761 + B3 SINE B2 52 216 0 6 1372 1206 247 75 80 chr11 103246229 103246271 -18597585 + L1MB8 LINE L1 5290 5323 -855 6 1372 1137 169 9 32 chr11 103246271 103246491 -18597365 + B3 SINE B2 2 216 0 6 1372 1206 247 75 80 chr11 103246491 103247021 -18596835 + L1MB8 LINE L1 5324 5858 -320 6 1372 351 270 60 0 chr11 103247033 103247133 -18596723 - PB1D10 SINE Alu -7 110 5 6 1372 438 267 0 0 chr11 103247155 103247260 -18596596 + B4A SINE B4 1 105 -187 6 1372 302 283 178 7 chr11 103247392 103247538 -18596318 + L1MB8 LINE L1 6005 6175 -9 6 1372 293 284 108 0 chr11 103247581 103247683 -18596173 - PB1D10 SINE Alu 0 117 5 6 1372 355 143 51 71 chr11 103247902 103248000 -18595856 + PB1D7 SINE Alu 23 118 -2 6 1372 365 305 13 7 chr11 103249727 103249879 -18593977 + L1MB7 LINE L1 4832 4984 -1162 6 1372 444 237 66 7 chr11 103250022 103250158 -18593698 + L1MB7 LINE L1 4934 5077 -1069 6 1372 236 289 99 49 chr11 103250173 103250315 -18593541 + L1MB7 LINE L1 5372 5520 -664 6 1372 226 233 25 76 chr11 103250330 103250409 -18593447 - PB1D10 SINE Alu -3 114 40 6 1372 819 262 182 0 chr11 103250451 103250791 -18593065 + L1MB7 LINE L1 5546 5947 -237 6 1372 650 200 0 0 chr11 103250869 103250989 -18592867 + B1_Mus1 SINE Alu 22 141 -7 6 1372 380 292 106 0 chr11 103251062 103251175 -18592681 + B3 SINE B2 1 125 -91 6 1372 322 228 209 9 chr11 103251180 103251295 -18592561 + L1M2 LINE L1 5507 5644 -647 6 1372 33 0 0 0 chr11 103251648 103251681 -18592175 + AT_rich Low_complexity Low_complexity 1 33 0 6 1372 279 265 11 98 chr11 103251728 103251820 -18592036 + MT2B LTR ERVL 173 256 -345 6 1372 583 211 40 8 chr11 103251743 103251867 -18591989 + B1_Mur2 SINE Alu 22 149 0 6 1372 222 274 236 0 chr11 103251869 103251975 -18591881 + B1F1 SINE Alu 19 149 0 6 1372 245 190 50 33 chr11 103251969 103252029 -18591827 + MT2B LTR ERVL 197 257 -344 6 1372 553 103 11 0 chr11 103251986 103252073 -18591783 + B1_Mur4 SINE Alu 63 150 0 6 1372 291 175 0 0 chr11 103252073 103252130 -18591726 + A-rich Low_complexity Low_complexity 1 57 0 6 1372 254 286 43 0 chr11 103252139 103252209 -18591647 + ID4_ SINE ID 3 75 -8 6 1372 1130 224 53 4 chr11 103252331 103252578 -18591278 - B4 SINE B4 -13 279 21 6 1372 417 109 0 0 chr11 103252786 103252850 -18591006 + Lx7 LINE L1 6989 7052 -644 6 1372 369 175 40 30 chr11 103252852 103252952 -18590904 + Lx7 LINE L1 7595 7695 -1 6 1372 253 290 152 48 chr11 103253507 103253612 -18590244 + PB1D10 SINE Alu 1 116 -1 6 1372 363 222 150 44 chr11 103253622 103253735 -18590121 + RSINE1 SINE B4 11 135 -30 6 1372 502 208 8 40 chr11 103255172 103255297 -18588559 + ID_B1 SINE B4 103 223 -1 6 1372 303 183 28 0 chr11 103255326 103255397 -18588459 + ID4 SINE ID 1 73 -10 6 1372 355 230 160 0 chr11 103255762 103255862 -18587994 + PB1D7 SINE Alu 1 116 -4 6 1372 246 299 15 0 chr11 103256860 103256927 -18586929 - ID4_ SINE ID -13 70 3 6 1372 891 201 58 19 chr11 103257167 103257375 -18586481 + B3 SINE B2 1 216 0 6 1372 987 223 5 36 chr11 103257648 103257867 -18585989 + B3 SINE B2 1 212 -4 6 1372 978 59 82 0 chr11 103257929 103258064 -18585792 + B1_Mm SINE Alu 2 147 0 6 1372 27 0 0 0 chr11 103258779 103258806 -18585050 + AT_rich Low_complexity Low_complexity 1 27 0 6 1372 914 214 16 27 chr11 103258819 103259006 -18584850 - B3 SINE B2 -1 215 31 6 1372 1261 109 0 25 chr11 103259020 103259218 -18584638 - B2_Mm2 SINE B2 -2 193 1 6 1372 443 173 53 0 chr11 103259487 103259562 -18584294 - B1_Mus2 SINE Alu -17 130 52 6 1372 244 247 33 56 chr11 103259562 103259577 -18584279 - ID_B1 SINE B4 -17 207 120 6 1372 817 200 0 7 chr11 103260049 103260195 -18583661 + B1_Mur1 SINE Alu 3 147 -2 6 1372 850 204 77 0 chr11 103260459 103260655 -18583201 + B3 SINE B2 1 211 -5 6 1372 1174 54 0 0 chr11 103260662 103260809 -18583047 + B1_Mus1 SINE Alu 2 148 0 6 1372 575 261 14 130 chr11 103260904 103261055 -18582801 - B3A SINE B2 -11 187 43 6 1372 431 129 274 8 chr11 103261055 103261172 -18582684 + B1_Mur3 SINE Alu 2 149 0 6 1372 575 261 14 130 chr11 103261172 103261227 -18582629 - B3A SINE B2 -156 42 5 6 1372 820 314 100 37 chr11 103261336 103261795 -18582061 - L1MB7 LINE L1 -29 6155 5668 6 1372 302 245 138 28 chr11 103261893 103262002 -18581854 + B1F SINE Alu 21 141 -8 6 1372 245 299 26 0 chr11 103262049 103262126 -18581730 + ID4 SINE ID 5 83 0 6 1372 1076 69 0 27 chr11 103262145 103262294 -18581562 + B1_Mus1 SINE Alu 2 146 -2 6 1372 1099 91 108 0 chr11 103262340 103262516 -18581340 + B2_Mm2 SINE B2 1 195 0 6 1372 411 294 96 102 chr11 103262548 103262870 -18580986 - L1MB7 LINE L1 -575 5605 5286 6 1372 803 135 35 0 chr11 103262961 103263102 -18580754 - B1_Mus2 SINE Alu 0 147 2 6 1372 355 331 109 46 chr11 103263112 103263286 -18580570 - B4A SINE B4 -69 223 39 6 1372 21 71 0 0 chr11 103263477 103263519 -18580337 + AT_rich Low_complexity Low_complexity 1 42 0 6 1372 780 233 83 15 chr11 103264137 103264331 -18579525 + B4A SINE B4 25 232 -60 6 1372 554 220 37 0 chr11 103264331 103264440 -18579416 + RSINE1 SINE B4 4 116 -49 6 1372 348 111 0 0 chr11 103264456 103264519 -18579337 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1372 189 132 0 0 chr11 103264524 103264562 -18579294 + (GGGAGA)n Simple_repeat Simple_repeat 4 41 0 6 1372 225 0 0 0 chr11 103264565 103264590 -18579266 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 6 1372 250 357 63 14 chr11 103264687 103264829 -18579027 + B1F SINE Alu 1 149 0 6 1372 1081 111 43 27 chr11 103264856 103265010 -18578846 + B2_Mm2 SINE B2 1 152 -43 6 1372 360 43 0 0 chr11 103265010 103265056 -18578800 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1372 1081 111 43 27 chr11 103265056 103265086 -18578770 + B2_Mm2 SINE B2 153 188 -7 6 1372 766 56 0 0 chr11 103265519 103265627 -18578229 + ORR1A1 LTR MaLR 1 108 -238 6 1372 399 40 0 0 chr11 103265621 103265671 -18578185 + ORR1A1 LTR MaLR 289 338 -8 6 1372 940 296 18 31 chr11 103265676 103265962 -18577894 + RCHARR1 DNA MER1_type 17 298 -676 6 1372 746 191 15 0 chr11 103265975 103266111 -18577745 - B1_Mur2 SINE Alu -10 139 2 6 1372 358 272 25 25 chr11 103266115 103266256 -18577600 - B1_Mur3 SINE Alu -6 141 1 6 1372 440 175 211 16 chr11 103266256 103266384 -18577472 + RCHARR1 DNA MER1_type 282 434 -540 6 1372 757 244 61 0 chr11 103266396 103266593 -18577263 + RCHARR1 DNA MER1_type 750 958 -16 6 1372 1576 26 0 25 chr11 103266929 103267126 -18576730 + B2_Mm1t SINE B2 1 192 -1 6 1372 1322 49 60 16 chr11 103267613 103267798 -18576058 + B2_Mm1a SINE B2 1 193 0 6 1372 1834 213 190 73 chr11 103268126 103268930 -18574926 + RLTR13D6 LTR ERVK 1 1033 0 6 1372 322 252 214 9 chr11 103269241 103269353 -18574503 + B1F SINE Alu 14 148 -1 6 1372 317 297 149 37 chr11 103269358 103269519 -18574337 + B3A SINE B2 16 194 -4 6 1372 180 0 0 0 chr11 103269522 103269542 -18574314 + (CTAAA)n Simple_repeat Simple_repeat 1 20 0 6 1372 185 281 121 12 chr11 103269921 103270004 -18573852 - MIRb SINE MIR -70 198 107 6 1372 218 266 0 0 chr11 103270581 103270687 -18573169 + (TTAGGG)n Simple_repeat Simple_repeat 1 106 0 6 1372 251 276 33 44 chr11 103270911 103271002 -18572854 - B1F SINE Alu -59 90 1 6 1372 721 108 177 0 chr11 103271043 103271173 -18572683 + B2_Mm1t SINE B2 35 187 -6 6 1372 337 300 13 73 chr11 103271180 103271331 -18572525 - B1F1 SINE Alu -7 142 1 6 1372 1014 112 0 0 chr11 103271454 103271597 -18572259 + B1_Mus1 SINE Alu 1 143 -5 6 1372 216 0 0 0 chr11 103271601 103271625 -18572231 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 6 1372 324 270 14 0 chr11 103271887 103271961 -18571895 + ID4_ SINE ID 1 75 -8 6 1372 404 176 0 13 chr11 103272812 103272887 -18570969 + ID_B1 SINE B4 81 154 -70 6 1372 385 252 115 10 chr11 103272813 103272917 -18570939 + PB1D10 SINE Alu 1 115 -2 6 1372 248 0 31 0 chr11 103272953 103272985 -18570871 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1372 430 153 0 76 chr11 103273012 103273104 -18570752 + B1_Mur2 SINE Alu 63 147 -2 6 1372 563 188 35 18 chr11 103274735 103274849 -18569007 - Lx6 LINE L1 -392 7068 6953 6 1372 651 156 18 9 chr11 103274842 103274952 -18568904 - Lx6 LINE L1 -609 6851 6741 6 1372 1189 202 44 134 chr11 103274982 103275167 -18568689 + ORR1B1 LTR MaLR 41 192 -202 6 1372 1364 48 21 16 chr11 103275167 103275358 -18568498 - B2_Mm1a SINE B2 0 193 2 6 1372 1189 202 44 134 chr11 103275358 103275561 -18568295 + ORR1B1 LTR MaLR 193 394 0 6 1372 4813 199 52 29 chr11 103275561 103276705 -18567151 - Lx6 LINE L1 -724 6736 5547 6 1372 648 253 52 0 chr11 103276701 103276895 -18566961 + Lx6 LINE L1 7088 7291 -169 6 1372 26 64 0 0 chr11 103277265 103277312 -18566544 + AT_rich Low_complexity Low_complexity 1 47 0 6 1372 229 267 146 19 chr11 103277405 103277508 -18566348 - RSINE1 SINE B4 -39 126 11 6 1372 945 141 217 17 chr11 103277767 103277947 -18565909 - B3 SINE B2 0 216 1 6 1372 227 323 65 0 chr11 103277969 103278028 -18565828 - ID4_ SINE ID -7 76 14 6 1372 1203 197 101 33 chr11 103278028 103278404 -18565452 + RMER16 LTR ERVK 1 533 0 6 1372 375 23 0 0 chr11 103278521 103278565 -18565291 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1372 367 330 0 0 chr11 103278601 103278689 -18565167 + B3A SINE B2 23 110 -88 6 1372 469 220 11 21 chr11 103278689 103278802 -18565054 + PB1D9 SINE Alu 2 113 -34 7 1372 211 200 0 0 chr11 103278923 103278958 -18564898 + B1F2 SINE Alu 1 35 -114 7 1372 356 279 21 85 chr11 103279067 103279208 -18564648 + MER3 DNA MER1_type 71 202 -7 7 1372 236 328 63 79 chr11 103279470 103279659 -18564197 + ORR1D1 LTR MaLR 8 193 -181 7 1372 243 0 0 0 chr11 103279672 103279699 -18564157 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1372 238 118 0 0 chr11 103280302 103280336 -18563520 - B1F SINE Alu -20 129 96 7 1372 305 274 24 103 chr11 103281274 103281400 -18562456 + RSINE1 SINE B4 17 132 -33 7 1372 665 258 77 5 chr11 103281418 103281613 -18562243 + ID_B1 SINE B4 8 216 -8 7 1372 1112 89 0 54 chr11 103281639 103281805 -18562051 + B2_Mm2 SINE B2 2 158 -37 7 1372 452 93 198 0 chr11 103281832 103281933 -18561923 + B2_Mm2 SINE B2 47 192 -1 7 1372 401 228 0 12 chr11 103281952 103282032 -18561824 + PB1D7 SINE Alu 32 110 -10 7 1372 303 231 0 0 chr11 103282040 103282092 -18561764 - HAL1-3A_ME LINE L1 -831 2027 1976 7 1372 399 89 0 0 chr11 103282093 103282149 -18561707 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1372 224 71 0 0 chr11 103282149 103282177 -18561679 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1372 413 157 96 0 chr11 103282179 103282262 -18561594 - U6 snRNA snRNA -4 103 13 7 1372 321 26 0 0 chr11 103282268 103282306 -18561550 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1372 413 157 96 0 chr11 103282310 103282393 -18561463 - U6 snRNA snRNA -4 103 13 7 1372 321 26 0 0 chr11 103282399 103282437 -18561419 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1372 413 157 96 0 chr11 103282441 103282524 -18561332 - U6 snRNA snRNA -4 103 13 7 1372 378 0 0 0 chr11 103282530 103282572 -18561284 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1372 540 225 57 52 chr11 103284392 103284584 -18559272 + B3A SINE B2 1 193 -5 7 171 770 347 142 40 chr11 103284721 103284847 -18559009 + MER21B LTR ERV1 6 132 -731 7 1373 1142 199 142 110 chr11 103284847 103285292 -18558564 - RMER6B LTR ERVK 0 461 3 7 1373 770 347 142 40 chr11 103285292 103285415 -18558441 + MER21B LTR ERV1 133 264 -599 7 1373 322 302 19 9 chr11 103285415 103285522 -18558334 + PB1D10 SINE Alu 2 109 -8 7 1373 770 347 142 40 chr11 103285522 103286030 -18557826 + MER21B LTR ERV1 265 841 -22 7 1373 280 253 35 71 chr11 103286054 103286139 -18557717 + MLT1F1 LTR MaLR 5 86 -483 7 1373 365 303 78 28 chr11 103286287 103286467 -18557389 + Lx8 LINE L1 7037 7225 -248 7 1373 368 322 68 101 chr11 103286661 103286977 -18556879 + MLT1G1 LTR MaLR 28 342 -206 7 1373 717 149 9 17 chr11 103287946 103288062 -18555794 + B1_Mur3 SINE Alu 4 118 -31 7 1373 2594 53 0 3 chr11 103288063 103288386 -18555470 - ORR1A2 LTR MaLR 0 327 6 7 1373 1263 101 0 0 chr11 103288950 103289119 -18554737 + B2_Mm2 SINE B2 1 169 -26 7 1373 392 67 17 0 chr11 103289125 103289185 -18554671 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1373 333 228 133 59 chr11 103290364 103290499 -18553357 - B1F SINE Alu 0 149 5 7 1373 240 271 107 0 chr11 103290804 103290944 -18552912 + ORR1B1-int LTR MaLR 600 754 -755 7 1373 1082 70 7 14 chr11 103290841 103290985 -18552871 + B1_Mus1 SINE Alu 6 148 0 7 1373 184 44 20 118 chr11 103290996 103291047 -18552809 + A-rich Low_complexity Low_complexity 2 47 0 7 1373 281 268 8 0 chr11 103291442 103291569 -18552287 + (CA)n Simple_repeat Simple_repeat 1 128 0 7 1373 1631 196 67 26 chr11 103292051 103292396 -18551460 - ORR1B2 LTR MaLR -8 359 1 7 1373 278 50 0 24 chr11 103292900 103292941 -18550915 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 7 1373 524 248 23 98 chr11 103293265 103293439 -18550417 + B3A SINE B2 38 198 0 7 1373 569 27 27 0 chr11 103293726 103293800 -18550056 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 7 1373 557 253 65 46 chr11 103295424 103295577 -18548279 + RSINE1 SINE B4 2 157 -8 7 1373 268 260 122 105 chr11 103295577 103295596 -18548260 + B2_Mm2 SINE B2 1 175 -20 7 1373 386 309 92 21 chr11 103296506 103296740 -18547116 - RMER20B LTR ERVK -223 419 169 7 1373 888 224 158 15 chr11 103297640 103297912 -18545944 - ORR1E LTR MaLR -1 358 48 7 1373 830 218 61 200 chr11 103299870 103300357 -18543499 - BGLII_B LTR ERVK -27 414 1 7 1373 207 0 0 0 chr11 103301264 103301287 -18542569 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1373 395 252 101 70 chr11 103301337 103301495 -18542361 - RSINE1 SINE B4 0 165 3 7 1373 278 198 102 20 chr11 103301541 103301639 -18542217 - MTEb LTR MaLR -81 298 193 7 1373 417 236 19 19 chr11 103301665 103301773 -18542083 + MT2B LTR ERVL 489 596 -5 7 1373 254 217 43 0 chr11 103302104 103302173 -18541683 - MYSERV16_I-int LTR ERVK -125 2201 2130 7 1373 2630 130 45 0 chr11 103302928 103303329 -18540527 + MTC LTR MaLR 3 421 0 7 1373 5201 115 59 16 chr11 103303333 103304194 -18539662 - RMER17A2 LTR ERVK -4 902 5 7 1373 3690 169 19 34 chr11 103304661 103305364 -18538492 - RLTR17 LTR ERVK 0 692 1 7 1373 7578 178 62 65 chr11 103305364 103307398 -18536458 - RMER3D-int LTR ERVK 0 2842 318 7 1373 716 248 0 26 chr11 103308296 103308449 -18535407 + B1_Mur3 SINE Alu 1 149 0 7 1373 497 308 7 27 chr11 103308965 103309112 -18534744 - B1F SINE Alu 0 149 6 7 1373 21 0 0 0 chr11 103309552 103309573 -18534283 + AT_rich Low_complexity Low_complexity 1 21 0 7 1373 267 31 0 0 chr11 103309573 103309605 -18534251 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1373 207 0 0 0 chr11 103309605 103309627 -18534229 + (GA)n Simple_repeat Simple_repeat 1 23 0 7 1373 212 304 36 0 chr11 103309636 103309692 -18534164 - RSINE1 SINE B4 -13 152 95 7 1373 3572 161 31 10 chr11 103309890 103310468 -18533388 - Lx5 LINE L1 -82 6968 6379 7 1373 4528 117 45 7 chr11 103310467 103311074 -18532782 + Lx5 LINE L1 5301 5934 -1116 7 1373 775 227 82 70 chr11 103311074 103311429 -18532427 + RLTR10D LTR ERVK 1 359 0 7 1373 4528 136 60 21 chr11 103311429 103311863 -18531993 + Lx5 LINE L1 5935 6382 -668 7 1373 22 0 0 0 chr11 103312025 103312047 -18531809 + AT_rich Low_complexity Low_complexity 1 22 0 7 1373 245 250 203 0 chr11 103312958 103313022 -18530834 + B1F1 SINE Alu 26 102 -47 7 1373 312 270 151 26 chr11 103313765 103313917 -18529939 + L1M2 LINE L1 4289 4459 -1684 7 1373 221 216 216 0 chr11 103314021 103314072 -18529784 + ID4_ SINE ID 6 67 -16 7 1373 260 313 56 60 chr11 103314271 103314556 -18529300 - B4A SINE B4 -6 286 3 7 1373 967 129 6 6 chr11 103314601 103314780 -18529076 + (TTC)n Simple_repeat Simple_repeat 2 180 0 7 1373 878 229 36 36 chr11 103315094 103315289 -18528567 + B3 SINE B2 1 195 -21 7 1373 315 0 0 0 chr11 103315290 103315325 -18528531 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1373 653 144 167 8 chr11 103315337 103315463 -18528393 + B1F SINE Alu 2 147 -2 7 1373 241 232 18 0 chr11 103315546 103315602 -18528254 + B3 SINE B2 110 166 -50 7 1373 825 249 47 71 chr11 103315865 103316120 -18527736 + RMER15 LTR ERVL 300 548 -27 7 1373 330 214 0 0 chr11 103316120 103316209 -18527647 + (TG)n Simple_repeat Simple_repeat 1 89 0 7 1373 300 183 33 0 chr11 103316224 103316284 -18527572 + B3 SINE B2 144 205 -11 7 1373 230 330 39 10 chr11 103317083 103317187 -18526669 + BC1_Mm scRNA scRNA 3 109 -43 7 1373 626 192 19 64 chr11 103317323 103317479 -18526377 + B1_Mur2 SINE Alu 1 149 0 7 1373 192 111 0 0 chr11 103317486 103317522 -18526334 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1373 321 278 50 34 chr11 103319701 103319820 -18524036 - PB1 SINE Alu -28 121 1 7 1373 474 245 19 89 chr11 103319847 103320004 -18523852 + B1_Mur1 SINE Alu 1 146 -3 7 1373 1026 91 35 0 chr11 103320437 103320580 -18523276 - B1_Mus1 SINE Alu 0 148 1 7 1373 1017 211 46 0 chr11 103320603 103320797 -18523059 - B3 SINE B2 -6 210 8 7 1373 343 216 0 38 chr11 103320804 103321020 -18522836 + (TA)n Simple_repeat Simple_repeat 1 207 0 7 1373 226 132 38 0 chr11 103321097 103321150 -18522706 + (CATA)n Simple_repeat Simple_repeat 2 56 0 7 1373 212 182 0 52 chr11 103321182 103321240 -18522616 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1373 403 279 31 38 chr11 103321242 103321402 -18522454 - RSINE1 SINE B4 -4 161 3 7 1373 1142 240 151 36 chr11 103321541 103322017 -18521839 + Lx9 LINE L1 7110 7640 -4 7 1373 2281 169 111 38 chr11 103322314 103322811 -18521045 + RMER16 LTR ERVK 1 533 0 7 1373 229 297 31 0 chr11 103323163 103323227 -18520629 + ID2 SINE ID 12 77 -6 7 1373 407 134 0 12 chr11 103323227 103323310 -18520546 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1373 244 216 64 51 chr11 103324339 103324417 -18519439 + PB1D7 SINE Alu 42 120 0 7 1373 330 194 16 0 chr11 103324684 103324746 -18519110 - ID4_ SINE ID -19 64 2 7 1373 348 340 143 0 chr11 103324801 103325066 -18518790 + L1ME1 LINE L1 5861 6163 -16 7 1373 405 304 93 29 chr11 103325125 103325264 -18518592 + RSINE1 SINE B4 3 150 -15 7 1373 1233 85 3 0 chr11 103325266 103325620 -18518236 + (CA)n Simple_repeat Simple_repeat 1 354 0 7 1373 583 273 56 46 chr11 103325843 103326039 -18517817 + B3A SINE B2 1 198 0 7 1373 248 310 24 151 chr11 103326220 103326425 -18517431 - RLTR25B LTR ERVK -408 620 442 7 1373 840 178 7 15 chr11 103326322 103326459 -18517397 - B1_Mur1 SINE Alu -7 142 7 7 1373 316 254 40 160 chr11 103326470 103326620 -18517236 - B3A SINE B2 -4 194 63 7 1373 360 299 84 17 chr11 103326605 103326724 -18517132 - B3A SINE B2 -36 162 36 7 1373 550 254 164 0 chr11 103326733 103326898 -18516958 + B3 SINE B2 16 207 -9 7 1373 279 0 0 0 chr11 103327066 103327097 -18516759 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1373 445 246 235 8 chr11 103327098 103327217 -18516639 - RSINE1 SINE B4 -18 147 2 8 1373 539 206 29 0 chr11 103327247 103327349 -18516507 - PB1D9 SINE Alu -7 113 9 8 1373 231 292 90 23 chr11 103327297 103327430 -18516426 - ID_B1 SINE B4 -82 142 1 8 1373 2112 76 0 0 chr11 103327430 103327705 -18516151 + L1VL2 LINE L1 344 618 -5717 8 1373 35 71 0 0 chr11 103327861 103327931 -18515925 + AT_rich Low_complexity Low_complexity 1 70 0 8 1373 873 94 60 74 chr11 103327934 103328083 -18515773 + B1_Mus1 SINE Alu 2 148 0 8 1373 1150 81 0 0 chr11 103328360 103328508 -18515348 - B1_Mur3 SINE Alu 0 149 2 8 1373 280 228 76 0 chr11 103328529 103328608 -18515248 + L1M2 LINE L1 2750 2834 -3309 8 1373 203 204 19 0 chr11 103328930 103328984 -18514872 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1373 657 167 42 0 chr11 103329247 103329367 -18514489 - B1_Mur3 SINE Alu -24 125 1 8 1373 24 0 0 0 chr11 103330146 103330170 -18513686 + AT_rich Low_complexity Low_complexity 1 24 0 8 1373 288 0 0 0 chr11 103330170 103330202 -18513654 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1373 295 227 0 29 chr11 103330267 103330335 -18513521 - B3A SINE B2 -130 68 3 8 1373 323 358 25 16 chr11 103330341 103330463 -18513393 - MIRb SINE MIR -117 151 29 8 1373 25 31 0 0 chr11 103330528 103330560 -18513296 + AT_rich Low_complexity Low_complexity 1 32 0 8 1373 267 311 27 0 chr11 103330751 103330825 -18513031 - ID4_ SINE ID 0 83 8 8 1373 433 249 33 81 chr11 103331072 103331213 -18512643 - ID_B1 SINE B4 -6 218 85 8 1373 824 296 185 20 chr11 103331357 103331568 -18512288 + L1M4 LINE L1 3 250 -6292 8 1373 291 71 0 0 chr11 103331568 103331610 -18512246 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 8 1373 824 296 185 20 chr11 103331610 103331950 -18511906 + L1M4 LINE L1 251 645 -5897 8 1373 184 310 113 30 chr11 103332382 103332515 -18511341 + MIRb SINE MIR 23 166 -102 8 1373 1168 199 19 0 chr11 103333206 103333417 -18510439 - B3 SINE B2 0 216 2 8 1373 188 114 0 43 chr11 103333694 103333740 -18510116 + A-rich Low_complexity Low_complexity 2 45 0 8 1373 1686 36 0 0 chr11 103333908 103334101 -18509755 + B2_Mm1a SINE B2 1 193 0 8 1373 225 0 0 0 chr11 103334101 103334126 -18509730 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1373 1050 208 40 52 chr11 103334524 103334849 -18509007 + BGLII_B LTR ERVK 121 441 0 8 1373 1123 52 0 0 chr11 103334884 103335018 -18508838 + B1_Mus1 SINE Alu 2 135 -13 8 1373 342 0 0 0 chr11 103335018 103335056 -18508800 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 8 1373 1936 317 66 48 chr11 103335332 103335823 -18508033 + MYSERV6-int LTR ERVK 969 1475 -5075 8 1373 1198 68 0 0 chr11 103335823 103335971 -18507885 + B1_Mus1 SINE Alu 1 148 0 8 1373 1936 317 66 48 chr11 103335971 103336481 -18507375 + MYSERV6-int LTR ERVK 1476 1988 -4562 8 1373 277 254 0 0 chr11 103336522 103336585 -18507271 + MYSERV6-int LTR ERVK 2715 2777 -3003 8 1373 2835 56 50 13 chr11 103336585 103336967 -18506889 + MTA_Mm LTR MaLR 1 396 0 8 1373 7012 93 22 4 chr11 103336967 103338039 -18505817 + MTA_Mm-int LTR MaLR 1 1092 -6 8 1373 2781 62 8 3 chr11 103338016 103338401 -18505455 + MTA_Mm LTR MaLR 14 400 0 8 1373 7833 195 9 23 chr11 103338401 103339938 -18503918 + MYSERV6-int LTR ERVK 2320 3834 -5125 8 1373 537 154 33 0 chr11 103339938 103340029 -18503827 + RLTR31_Mm LTR ERVK 1 94 -467 8 1373 195 69 0 0 chr11 103340029 103340058 -18503798 + (CAGAGA)n Simple_repeat Simple_repeat 1 29 0 8 1373 3525 195 74 17 chr11 103340066 103340942 -18502914 + MYSERV6-int LTR ERVK 3588 4615 -4344 8 1373 2157 106 20 104 chr11 103340946 103341348 -18502508 + RLTR9A LTR ERVK 1 368 0 8 1373 281 300 126 48 chr11 103341350 103341644 -18502212 + ETnERV2-int LTR ERVK 4 320 -2994 8 1373 6038 132 49 50 chr11 103341694 103341726 -18502130 + ETnERV2-int LTR ERVK 1046 1078 -6328 8 1373 621 72 0 0 chr11 103341726 103341809 -18502047 + (GGA)n Simple_repeat Simple_repeat 2 84 0 8 1373 6038 132 49 50 chr11 103341809 103342923 -18500933 + ETnERV2-int LTR ERVK 1079 2191 -5215 8 1373 10896 170 72 53 chr11 103343023 103344888 -18498968 + RMER16-int LTR ERVK 1415 3878 -3528 8 1373 2317 60 22 6 chr11 103344888 103345204 -18498652 - L1_Mus3 LINE L1 -8 6630 6310 8 1373 10896 151 82 47 chr11 103345204 103345263 -18498593 + RMER16-int LTR ERVK 2806 2864 -2542 8 1373 402 21 0 0 chr11 103345263 103345310 -18498546 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 8 1373 10896 165 72 48 chr11 103345310 103346458 -18497398 + RMER16-int LTR ERVK 2865 3821 -1585 8 1373 306 200 46 23 chr11 103346626 103346713 -18497143 + RMER16-int LTR ERVK 6337 6425 -981 8 1373 321 184 25 50 chr11 103346912 103346992 -18496864 + RMER16-int LTR ERVK 7327 7404 -2 8 1373 1950 119 118 3 chr11 103346993 103347323 -18496533 + RLTR9A LTR ERVK 1 368 0 8 1373 4346 185 82 44 chr11 103347466 103349269 -18494587 + MYSERV16_I-int LTR ERVK 402 2326 0 8 1373 983 221 15 38 chr11 103349275 103349602 -18494254 + BGLII_B LTR ERVK 110 439 -2 8 1373 1673 202 17 51 chr11 103349752 103350276 -18493580 + L1_Mur3 LINE L1 876 1370 -4507 8 1373 2122 141 3 58 chr11 103350336 103350682 -18493174 + ORR1A2 LTR MaLR 1 327 0 8 1373 315 239 14 0 chr11 103350827 103350898 -18492958 - AluF_3 SINE Alu -99 212 141 8 1373 402 275 83 15 chr11 103351399 103351532 -18492324 - B1F SINE Alu -6 143 2 8 1373 727 127 101 23 chr11 103351626 103351755 -18492101 - B1_Mur3 SINE Alu -9 140 2 8 1373 380 307 9 17 chr11 103352718 103352834 -18491022 - MER20 DNA MER1_type -15 204 90 8 1373 305 244 12 37 chr11 103353248 103353329 -18490527 + ID2 SINE ID 5 83 0 8 1373 242 292 40 50 chr11 103353891 103353992 -18489864 + MER5A DNA MER1_type 63 162 -27 8 1373 548 256 0 58 chr11 103354181 103354318 -18489538 + RSINE1 SINE B4 2 130 -35 8 1373 216 0 0 0 chr11 103354425 103354449 -18489407 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1373 230 0 33 0 chr11 103354530 103354560 -18489296 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1373 301 287 31 41 chr11 103354564 103354662 -18489194 - MER58C DNA MER1_type -25 190 94 8 1373 397 306 0 22 chr11 103355371 103355508 -18488348 - B1F1 SINE Alu -6 143 10 8 1373 1071 259 68 65 chr11 103356181 103356583 -18487273 + MTD LTR MaLR 9 399 -20 8 1373 527 253 14 14 chr11 103356673 103356821 -18487035 + B1F2 SINE Alu 2 149 0 8 1373 377 320 33 39 chr11 103356916 103357069 -18486787 + RSINE1 SINE B4 4 155 -10 8 1373 224 370 35 41 chr11 103358234 103358403 -18485453 - MIR SINE MIR -69 193 26 8 1373 255 103 0 0 chr11 103364435 103364474 -18479382 + (TCC)n Simple_repeat Simple_repeat 2 40 0 8 1373 207 135 0 51 chr11 103366532 103366571 -18477285 + G-rich Low_complexity Low_complexity 4 40 0 8 1373 319 198 272 0 chr11 103367966 103368047 -18475809 + PB1D9 SINE Alu 1 103 -17 8 1373 273 343 9 54 chr11 103368270 103368381 -18475475 + PB1D10 SINE Alu 3 108 -9 8 1373 541 274 106 11 chr11 103368928 103369116 -18474740 - B3 SINE B2 -10 206 1 8 1373 279 0 0 0 chr11 103369540 103369571 -18474285 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1373 250 114 0 0 chr11 103370076 103370111 -18473745 - RSINE1 SINE B4 -43 122 88 8 1373 244 157 19 19 chr11 103370185 103370237 -18473619 + PB1D7 SINE Alu 69 120 0 8 1373 325 77 46 0 chr11 103370248 103370313 -18473543 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 8 1373 467 232 45 115 chr11 103370395 103370595 -18473261 - B3A SINE B2 -10 188 3 8 1373 262 281 41 54 chr11 103370615 103370762 -18473094 + B1F SINE Alu 5 149 0 8 1373 321 236 7 88 chr11 103370765 103370902 -18472954 + ID4 SINE ID 5 130 -22 8 1373 235 326 45 0 chr11 103371177 103371266 -18472590 + ID_B1 SINE B4 129 221 -3 8 1373 867 180 141 16 chr11 103371386 103371578 -18472278 - B3 SINE B2 0 216 1 8 1373 716 132 0 0 chr11 103371866 103371972 -18471884 + Lx6 LINE L1 6630 6735 -725 8 1373 990 167 0 0 chr11 103371998 103372178 -18471678 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 1373 2948 233 33 52 chr11 103372179 103372767 -18471089 + Lx6 LINE L1 6749 7321 -139 8 1373 1424 34 17 0 chr11 103372767 103372946 -18470910 - L1Md_A LINE L1 0 6582 6401 8 1373 2948 233 33 52 chr11 103372946 103373083 -18470773 + Lx6 LINE L1 7322 7460 0 8 1373 1175 36 7 0 chr11 103373088 103373226 -18470630 + B1_Mus1 SINE Alu 1 139 -9 8 1373 2730 228 85 95 chr11 103373262 103374235 -18469621 + MTC-int LTR MaLR 295 1258 0 8 1373 1008 208 222 13 chr11 103374255 103374572 -18469284 + MTD LTR MaLR 37 419 0 8 1373 825 133 162 40 chr11 103374620 103374793 -18469063 + B3 SINE B2 5 198 -18 8 1373 297 200 0 32 chr11 103374853 103374915 -18468941 + Lx8 LINE L1 7402 7461 -12 8 1373 281 0 77 0 chr11 103375259 103375298 -18468558 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 8 1373 1200 48 7 0 chr11 103375298 103375444 -18468412 - B1_Mus1 SINE Alu 0 148 2 8 1373 3819 189 54 57 chr11 103376312 103376882 -18466974 - RLTR25A LTR ERVK 0 1028 392 8 1373 270 0 0 0 chr11 103376882 103376912 -18466944 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1373 3819 185 30 45 chr11 103376912 103377335 -18466521 - RLTR25A LTR ERVK -709 394 2 8 1373 860 258 77 70 chr11 103377460 103377856 -18466000 + MTE2a LTR MaLR 11 405 -14 8 1373 1145 221 144 16 chr11 103378146 103378470 -18465386 - MTD LTR MaLR -14 405 50 8 1373 8353 66 4 6 chr11 103378485 103380212 -18463644 - L1_Mus1 LINE L1 0 6567 4842 8 1373 684 0 0 0 chr11 103380324 103380400 -18463456 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 8 1373 2401 93 0 6 chr11 103380406 103380752 -18463104 + MTB_Mm LTR MaLR 1 344 -63 8 1373 315 71 0 0 chr11 103380752 103380794 -18463062 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1373 417 39 0 0 chr11 103380801 103380852 -18463004 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1373 359 315 92 0 chr11 103381079 103381209 -18462647 - RSINE1 SINE B4 -10 155 14 8 1373 716 262 29 0 chr11 103381322 103381352 -18462504 - B3 SINE B2 -28 188 156 8 1373 453 76 0 0 chr11 103381352 103381418 -18462438 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1373 716 262 29 0 chr11 103381418 103381559 -18462297 - B3 SINE B2 -61 155 13 8 1373 742 192 67 62 chr11 103381986 103382180 -18461676 - B3 SINE B2 -21 195 1 8 1373 1690 5 21 0 chr11 103382339 103382527 -18461329 - B2_Mm1a SINE B2 0 193 2 8 1373 1346 85 17 0 chr11 103382553 103382729 -18461127 - B2_Mm2 SINE B2 -12 183 5 8 1373 775 163 8 0 chr11 103382760 103382889 -18460967 - B1_Mur2 SINE Alu 0 149 20 8 1373 1796 270 33 38 chr11 103382889 103383929 -18459927 + Lx6 LINE L1 6108 7434 -26 8 1373 3111 173 98 63 chr11 103383974 103384579 -18459277 + Lx7 LINE L1 6921 7518 -178 8 1373 1415 85 5 0 chr11 103384579 103384768 -18459088 - B2_Mm1t SINE B2 -3 190 1 9 1373 3111 173 98 63 chr11 103384768 103384907 -18458949 + Lx7 LINE L1 7519 7691 -5 8 1373 629 269 58 14 chr11 103384907 103385087 -18458769 - B3 SINE B2 -11 184 1 9 1373 976 269 154 24 chr11 103385562 103386145 -18457711 - MTE2a-int LTR MaLR -383 1197 539 9 1373 1568 249 24 3 chr11 103386157 103386536 -18457320 - MTE2a-int LTR MaLR -1193 387 1 9 1373 1422 216 15 93 chr11 103386519 103386585 -18457271 - MTE2a LTR MaLR -2 377 317 9 1373 826 275 5 5 chr11 103386585 103386804 -18457052 + ID_B1 SINE B4 1 219 -5 9 1373 1422 216 15 93 chr11 103386804 103387146 -18456710 - MTE2a LTR MaLR -63 316 1 9 1373 328 250 12 75 chr11 103387196 103387356 -18456500 + RLTR15 LTR ERVK 194 343 -16 9 1373 2725 275 69 78 chr11 103387929 103388499 -18455357 + MYSERV-int LTR ERVK 3750 4316 -2234 9 1373 2013 153 9 41 chr11 103388499 103388839 -18455017 - ORR1A4 LTR MaLR 0 329 1 9 1373 2725 275 69 78 chr11 103388839 103389554 -18454302 + MYSERV-int LTR ERVK 4317 5022 -1528 9 1373 487 242 21 127 chr11 103389554 103389743 -18454113 + RMER4B LTR ERVK 371 539 -46 9 1373 796 151 102 28 chr11 103389753 103389930 -18453926 + MYSERV6-int LTR ERVK 7768 7957 -1002 9 1373 868 203 43 11 chr11 103389930 103390114 -18453742 - B2_Mm2 SINE B2 -5 190 1 9 1373 291 150 0 62 chr11 103390120 103390184 -18453672 + MYSERV6-int LTR ERVK 7950 8009 -950 9 1373 259 245 10 50 chr11 103390189 103390321 -18453535 + Lx4B LINE L1 6840 7038 -20 9 1373 259 133 0 0 chr11 103390328 103390373 -18453483 - MYSERV6-int LTR ERVK -907 8052 8008 9 1373 3162 143 53 9 chr11 103390383 103390932 -18452924 + MYSERV16_I-int LTR ERVK 1754 2326 0 9 1373 278 178 0 0 chr11 103390934 103390979 -18452877 + MYSERV6-int LTR ERVK 8832 8876 -83 9 1373 266 0 29 0 chr11 103390980 103391014 -18452842 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1373 3416 75 40 21 chr11 103391482 103391956 -18451900 + L1_Mus3 LINE L1 6146 6628 -10 9 1373 549 281 0 14 chr11 103391976 103392117 -18451739 - B3A SINE B2 -47 151 13 9 1373 21 0 0 0 chr11 103392207 103392228 -18451628 + AT_rich Low_complexity Low_complexity 1 21 0 9 1373 306 0 0 0 chr11 103392253 103392287 -18451569 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1373 608 220 37 0 chr11 103392287 103392396 -18451460 - RSINE1 SINE B4 -40 125 13 9 1373 3478 48 0 0 chr11 103393046 103393440 -18450416 + L1_Mus1 LINE L1 6174 6567 0 9 1373 4079 179 12 6 chr11 103393487 103394161 -18449695 + Lx5 LINE L1 6373 7050 0 9 1373 631 221 35 14 chr11 103394420 103394562 -18449294 - B3 SINE B2 -4 212 68 9 1373 1920 262 33 47 chr11 103394568 103394928 -18448928 + Lx6 LINE L1 6945 7213 -247 9 1373 2602 83 0 52 chr11 103394928 103395273 -18448583 + ORR1A2 LTR MaLR 1 327 0 9 1373 1920 252 33 42 chr11 103395273 103395500 -18448356 + Lx6 LINE L1 7214 7427 -33 9 1373 1040 158 16 16 chr11 103395573 103395760 -18448096 - ORR1D1 LTR MaLR -187 187 1 9 1373 22 0 0 0 chr11 103395904 103395926 -18447930 + AT_rich Low_complexity Low_complexity 1 22 0 9 1373 525 210 124 16 chr11 103396785 103396906 -18446950 + B1F SINE Alu 5 138 -11 9 1373 252 0 0 0 chr11 103396906 103396934 -18446922 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 1373 224 140 0 23 chr11 103398244 103398288 -18445568 + PB1D9 SINE Alu 73 115 -5 9 1373 248 257 153 28 chr11 103398308 103398380 -18445476 - RSINE1 SINE B4 -28 137 57 9 1373 227 309 0 0 chr11 103398870 103398951 -18444905 + L1_Mm LINE L1 4375 4455 -1428 9 1373 403 280 94 23 chr11 103398991 103399119 -18444737 + RSINE1 SINE B4 1 137 -28 9 1373 558 208 59 0 chr11 103399139 103399240 -18444616 - B1_Mur1 SINE Alu -5 144 38 9 1373 2969 26 144 0 chr11 103399241 103399587 -18444269 + MTA_Mm LTR MaLR 1 396 0 9 1373 607 250 85 28 chr11 103399623 103399800 -18444056 + B3 SINE B2 1 187 -29 9 1373 937 213 20 36 chr11 103399801 103399996 -18443860 + B3A SINE B2 7 198 0 9 1373 419 267 129 0 chr11 103400202 103400303 -18443553 + B3A SINE B2 47 160 -38 9 1373 400 289 82 0 chr11 103400405 103400540 -18443316 + B1F SINE Alu 2 147 -2 9 1373 261 0 0 0 chr11 103400718 103400747 -18443109 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1373 22 0 0 0 chr11 103402291 103402313 -18441543 + AT_rich Low_complexity Low_complexity 1 22 0 9 1373 394 331 0 58 chr11 103402354 103402508 -18441348 + B1F SINE Alu 1 145 -4 9 1373 478 267 0 76 chr11 103402509 103402526 -18441330 + ID_B1 SINE B4 78 213 -11 9 1373 704 239 0 21 chr11 103402526 103402654 -18441202 + B1_Mur1 SINE Alu 11 138 -11 9 1373 209 33 33 0 chr11 103402654 103402684 -18441172 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 1373 478 267 0 76 chr11 103402684 103402696 -18441160 + ID_B1 SINE B4 214 223 -1 9 1373 741 249 50 20 chr11 103406197 103406398 -18437458 + BGLII_B LTR ERVK 231 437 -4 9 1373 376 266 42 11 chr11 103406406 103406501 -18437355 - B1F1 SINE Alu -51 98 1 9 1373 261 274 8 100 chr11 103407558 103407616 -18436240 + BC1_Mm scRNA scRNA 14 69 -83 9 1373 189 0 0 0 chr11 103407616 103407637 -18436219 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 1373 261 274 8 100 chr11 103407637 103407708 -18436148 + BC1_Mm scRNA scRNA 70 131 -21 9 1373 617 38 0 12 chr11 103407875 103407956 -18435900 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 9 1373 396 234 0 0 chr11 103407973 103408050 -18435806 - B1_Mur2 SINE Alu -10 139 63 9 1373 279 261 92 93 chr11 103408051 103408414 -18435442 + RLTR12B LTR ERVK 9 320 -208 9 1373 16041 201 71 15 chr11 103409649 103410258 -18433598 + Lx5 LINE L1 806 1440 -4437 9 1373 204 40 0 0 chr11 103410258 103410283 -18433573 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1373 16041 141 62 11 chr11 103410283 103412197 -18431659 + Lx5 LINE L1 1441 3477 -2400 9 1373 902 100 0 7 chr11 103412197 103412338 -18431518 + (GAAA)n Simple_repeat Simple_repeat 3 142 0 9 1373 558 0 0 0 chr11 103412341 103412403 -18431453 + (GAGAA)n Simple_repeat Simple_repeat 1 62 0 9 1373 16041 141 62 11 chr11 103412403 103413125 -18430731 + Lx5 LINE L1 3478 4216 -1661 9 1373 3254 238 117 102 chr11 103413125 103413917 -18429939 + RLTR22_Mur LTR ERVK 1 747 -1101 9 1373 1250 61 0 20 chr11 103413917 103414067 -18429789 + B1_Mm SINE Alu 1 147 0 9 1373 3254 238 117 102 chr11 103414067 103414333 -18429523 + RLTR22_Mur LTR ERVK 748 1034 -814 9 1373 776 11 11 0 chr11 103414333 103414426 -18429430 + (GA)n Simple_repeat Simple_repeat 2 95 0 9 1373 3254 238 117 102 chr11 103414426 103414690 -18429166 + RLTR22_Mur LTR ERVK 1035 1307 -541 9 1373 588 111 0 0 chr11 103414690 103414780 -18429076 + (TG)n Simple_repeat Simple_repeat 2 91 0 9 1373 3254 238 117 102 chr11 103414780 103415039 -18428817 + RLTR22_Mur LTR ERVK 1308 1608 -240 9 1373 293 243 40 0 chr11 103415098 103415172 -18428684 + RLTR21 LTR ERVK 1341 1417 -155 9 171 8129 136 59 16 chr11 103415298 103417410 -18426446 + Lx5 LINE L1 4217 7045 -5 9 1374 947 343 14 11 chr11 103417542 103417978 -18425878 + MYSERV6-int LTR ERVK 432 868 -8091 9 1374 33545 82 12 11 chr11 103417981 103422365 -18421491 + L1Md_F2 LINE L1 245 4630 -1253 9 1374 269 26 26 0 chr11 103422365 103422403 -18421453 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 9 1374 33545 63 9 1 chr11 103422403 103423349 -18420507 + L1Md_F2 LINE L1 4631 5584 -299 9 1374 8367 62 0 8 chr11 103423349 103424352 -18419504 + L1Md_F2 LINE L1 5587 6581 -1 9 1374 4559 134 37 37 chr11 103424352 103425127 -18418729 + RMER16-int LTR ERVK 2549 3323 -2083 9 1374 5388 54 11 7 chr11 103425127 103425823 -18418033 + RLTR13C2 LTR ERVK 1 699 -109 9 1374 351 0 0 0 chr11 103425824 103425863 -18417993 + (A)n Simple_repeat Simple_repeat 1 39 0 9 1374 2608 301 35 50 chr11 103425868 103425963 -18417893 + MYSERV6-int LTR ERVK 863 977 -7982 9 1374 3578 158 93 38 chr11 103425963 103426513 -18417343 + RLTR17 LTR ERVK 1 571 -121 9 1374 342 0 0 0 chr11 103426513 103426551 -18417305 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9 1374 1143 71 0 28 chr11 103426551 103426696 -18417160 - B1_Mm SINE Alu -3 144 4 9 1374 3578 158 93 38 chr11 103426696 103426800 -18417056 + RLTR17 LTR ERVK 572 691 -1 9 1374 2608 293 35 45 chr11 103426800 103427862 -18415994 + MYSERV6-int LTR ERVK 978 1993 -6966 9 1374 1343 31 0 0 chr11 103427862 103428021 -18415835 + B2_Mm1t SINE B2 2 160 -33 9 1374 381 22 0 0 chr11 103428021 103428067 -18415789 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 9 1374 6835 197 33 48 chr11 103428192 103428549 -18415307 + MYSERV6-int LTR ERVK 2099 2457 -6502 9 1374 2648 39 42 0 chr11 103428549 103428855 -18415001 + L1_Mus1 LINE L1 6248 6566 -1 9 1374 6835 197 33 48 chr11 103428855 103429250 -18414606 + MYSERV6-int LTR ERVK 2458 2817 -6142 9 1374 269 26 26 0 chr11 103429250 103429288 -18414568 + (CAA)n Simple_repeat Simple_repeat 1 39 0 9 1374 6835 197 33 48 chr11 103429288 103429946 -18413910 + MYSERV6-int LTR ERVK 2818 3480 -5479 9 1374 3922 158 78 22 chr11 103429946 103430418 -18413438 + RMER6A LTR ERVK 1 509 -247 9 1374 531 0 0 0 chr11 103430418 103430477 -18413379 + (GA)n Simple_repeat Simple_repeat 2 60 0 9 1374 3922 158 78 22 chr11 103430477 103430720 -18413136 + RMER6A LTR ERVK 510 756 0 9 1374 6835 197 33 48 chr11 103430720 103430936 -18412920 + MYSERV6-int LTR ERVK 3481 3703 -5256 9 1374 396 0 0 0 chr11 103430940 103430984 -18412872 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1374 692 160 0 34 chr11 103430984 103431159 -18412697 + (TG)n Simple_repeat Simple_repeat 1 169 0 9 1374 2146 236 35 10 chr11 103431159 103431652 -18412204 + MYSERV6-int LTR ERVK 4273 4777 -483 9 1374 1894 238 73 93 chr11 103431653 103432550 -18411306 + RLTR22_Mur LTR ERVK 1 1133 -715 9 1374 1066 211 81 186 chr11 103432567 103433183 -18410673 + RMER12 LTR ERVK 821 1563 -245 9 1374 1155 247 11 7 chr11 103433183 103433468 -18410388 + MYSERV6-int LTR ERVK 4774 5059 -201 9 1374 1926 226 82 30 chr11 103433467 103433992 -18409864 + MYSERV-int LTR ERVK 4601 5152 -1398 9 1374 571 221 6 133 chr11 103433995 103434181 -18409675 + RMER4A LTR ERVK 282 556 -29 9 1374 1162 152 48 90 chr11 103434181 103434659 -18409197 + MYSERV-int LTR ERVK 8709 8955 -4 9 1374 489 285 61 90 chr11 103434670 103434809 -18409047 + RLTR12B LTR ERVK 9 139 -389 9 1374 623 103 8 25 chr11 103434809 103434929 -18408927 - L1_Mus4 LINE L1 -1 6635 6518 9 1374 489 280 54 119 chr11 103434929 103435125 -18408731 + RLTR12B LTR ERVK 140 322 -246 9 1374 2719 144 153 21 chr11 103435902 103436419 -18407437 - RMER4B LTR ERVK 0 585 1 9 1374 817 163 85 0 chr11 103436419 103436572 -18407284 - MurERV4-int LTR ERVK 0 5260 5095 9 1374 7185 164 83 20 chr11 103436591 103437981 -18405875 - MurERV4-int LTR ERVK -3498 1762 178 9 1374 509 44 15 0 chr11 103437981 103438049 -18405807 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 9 1374 941 224 172 25 chr11 103438049 103438180 -18405676 - MurERV4-int LTR ERVK -5083 177 2 9 1374 278 143 171 0 chr11 103438183 103438253 -18405603 - RMER4B LTR ERVK -3 582 501 9 1374 396 263 34 53 chr11 103439026 103439235 -18404621 + L1ME1 LINE L1 5077 5281 -865 9 1374 352 295 90 11 chr11 103439282 103439371 -18404485 + RSINE1 SINE B4 68 163 -2 9 1374 357 298 5 43 chr11 103439430 103439576 -18404280 + PB1D10 SINE Alu 1 149 0 9 1374 3062 81 30 2 chr11 103439714 103440108 -18403748 + RLTR44B LTR ERVK 1 405 0 9 1374 641 100 4 4 chr11 103440108 103440242 -18403614 + RLTR44-int LTR ERVK 209 303 -2509 9 1374 5546 110 13 21 chr11 103440910 103441934 -18401922 + RLTR44-int LTR ERVK 662 1489 -1323 9 1374 5168 46 0 0 chr11 103441946 103442612 -18401244 + RLTR44-int LTR ERVK 2117 2812 0 9 1374 3278 77 37 16 chr11 103442612 103443048 -18400808 + RLTR44B LTR ERVK 1 445 -4 9 1374 712 258 46 23 chr11 103443094 103443312 -18400544 - ID_B1 SINE B4 0 224 2 9 1374 368 289 54 6 chr11 103443391 103443558 -18400298 + L1ME1 LINE L1 5861 6035 -144 9 1374 428 307 52 32 chr11 103443573 103443728 -18400128 - RSINE1 SINE B4 -4 161 4 9 1374 222 202 0 0 chr11 103444323 103444373 -18399483 - B3A SINE B2 -166 50 1 9 1374 900 161 0 0 chr11 103444418 103444561 -18399295 - B1_Mur4 SINE Alu -6 144 2 9 1374 3047 332 31 20 chr11 103444602 103444688 -18399168 + Lx8 LINE L1 6097 6189 -1284 9 1374 450 65 0 0 chr11 103444688 103444750 -18399106 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1374 675 0 0 0 chr11 103444750 103444825 -18399031 + (GA)n Simple_repeat Simple_repeat 1 75 0 9 1374 3047 332 31 20 chr11 103444825 103445234 -18398622 + Lx8 LINE L1 6190 6611 -862 9 1374 207 0 0 0 chr11 103445234 103445257 -18398599 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1374 3047 332 31 20 chr11 103445257 103445938 -18397918 + Lx8 LINE L1 6612 7286 -187 9 1374 522 278 6 100 chr11 103446315 103446495 -18397361 + RSINE1 SINE B4 3 165 0 9 1374 678 219 153 16 chr11 103446634 103446824 -18397032 + B3 SINE B2 1 216 0 9 1374 196 333 71 24 chr11 103447149 103447275 -18396581 + L2c LINE L2 3254 3385 -2 9 1374 1195 114 172 39 chr11 103447522 103447770 -18396086 + ORR1B2 LTR MaLR 1 281 -48 9 1374 3467 42 0 0 chr11 103447773 103448181 -18395675 + L1Md_F2 LINE L1 5179 5586 -297 1 1374 8426 45 0 0 chr11 103448181 103449177 -18394679 + L1Md_F2 LINE L1 5587 6582 0 1 1374 317 109 0 0 chr11 103449177 103449223 -18394633 + ORR1B2 LTR MaLR 341 386 -8 9 1374 321 265 98 0 chr11 103449230 103449332 -18394524 + Lx8 LINE L1 7178 7289 -184 1 1374 1092 229 117 7 chr11 103449360 103449642 -18394214 - ORR1D2 LTR MaLR -13 357 45 1 1374 1271 20 7 0 chr11 103449680 103449826 -18394030 + B1_Mus2 SINE Alu 1 147 0 1 1374 264 91 0 0 chr11 103449833 103449877 -18393979 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1374 364 224 72 101 chr11 103450273 103450412 -18393444 - B1F SINE Alu 0 149 15 1 1374 361 294 46 64 chr11 103450939 103451043 -18392813 + Lx8 LINE L1 7229 7327 -146 1 1374 180 0 0 0 chr11 103451043 103451063 -18392793 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1374 361 294 46 64 chr11 103451063 103451089 -18392767 + Lx8 LINE L1 7328 7352 -121 1 1374 2449 152 158 93 chr11 103451089 103451317 -18392539 + RMER6C LTR ERVK 1 317 -373 1 1374 288 0 0 0 chr11 103451317 103451349 -18392507 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1374 2449 152 158 93 chr11 103451349 103451766 -18392090 + RMER6C LTR ERVK 318 688 -2 1 1374 361 294 46 64 chr11 103451766 103451852 -18392004 + Lx8 LINE L1 7353 7440 -33 1 1374 486 0 0 0 chr11 103451855 103451909 -18391947 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1374 866 281 0 32 chr11 103451916 103452166 -18391690 + Lx8 LINE L1 6200 6441 -1032 1 1374 1541 189 95 12 chr11 103452174 103452511 -18391345 - ORR1D1 LTR MaLR 0 374 10 1 1374 2697 283 61 50 chr11 103452512 103453498 -18390358 + Lx8 LINE L1 6453 7449 -24 1 1374 369 0 0 0 chr11 103453583 103453624 -18390232 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1374 22 80 0 0 chr11 103453708 103453758 -18390098 + AT_rich Low_complexity Low_complexity 1 50 0 1 1374 587 303 64 105 chr11 103453823 103454214 -18389642 + L1M4 LINE L1 361 735 -5807 1 1374 32892 95 2 24 chr11 103454946 103457778 -18386078 + L1_Mus2 LINE L1 436 3180 -2703 1 1374 210 37 0 0 chr11 103457778 103457805 -18386051 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1374 32892 84 1 10 chr11 103457805 103461197 -18382659 + L1_Mus2 LINE L1 3181 6565 -1 1 1374 662 175 142 57 chr11 103461227 103461403 -18382453 + B2_Mm2 SINE B2 1 191 -4 1 1374 246 333 22 0 chr11 103463560 103463650 -18380206 - Arthur1 DNA Tip100 -3853 94 3 1 1374 1453 210 26 3 chr11 103463951 103464300 -18379556 + L1_Mur3 LINE L1 860 1216 -6496 1 1374 870 235 58 39 chr11 103464299 103464507 -18379349 + Lx6 LINE L1 6989 7200 -260 1 1374 25 0 0 0 chr11 103464592 103464617 -18379239 + AT_rich Low_complexity Low_complexity 1 25 0 1 1374 296 324 9 9 chr11 103464851 103464960 -18378896 - MER20 DNA MER1_type 0 219 111 1 1374 334 294 61 38 chr11 103465074 103465205 -18378651 + RSINE1 SINE B4 3 136 -29 1 1374 538 151 0 0 chr11 103465584 103465670 -18378186 + BC1_Mm scRNA scRNA 2 87 -65 1 1374 392 209 77 60 chr11 103466232 103466349 -18377507 + MER5A DNA MER1_type 45 163 -26 1 1374 254 261 92 67 chr11 103466694 103466813 -18377043 - B4 SINE B4 -8 284 163 1 1374 372 139 14 14 chr11 103466985 103467058 -18376798 - B3A SINE B2 -69 129 57 1 1374 193 295 64 0 chr11 103467320 103467398 -18376458 + L2c LINE L2 3258 3340 -47 1 1374 636 200 26 0 chr11 103467658 103467773 -18376083 - PB1D9 SINE Alu 0 120 3 1 1374 1146 68 0 13 chr11 103467815 103467964 -18375892 + B1_Mus1 SINE Alu 2 148 0 1 1374 2031 119 83 81 chr11 103468023 103468442 -18375414 + BGLII_Mus LTR ERVK 1 420 -2 1 1374 611 201 20 48 chr11 103468666 103468812 -18375044 - B1_Mur1 SINE Alu -7 142 1 1 1374 322 319 0 0 chr11 103469044 103469116 -18374740 + B1F1 SINE Alu 1 72 -77 1 1374 676 286 15 25 chr11 103469153 103469350 -18374506 + ID_B1 SINE B4 21 215 -9 1 1374 213 235 59 0 chr11 103469308 103469359 -18374497 + PB1D10 SINE Alu 64 117 0 1 1374 410 306 0 22 chr11 103469954 103470091 -18373765 - B1F1 SINE Alu -6 143 10 1 1374 409 359 75 22 chr11 103471992 103472260 -18371596 - B4A SINE B4 -6 286 5 1 1374 283 265 0 0 chr11 103472282 103472360 -18371496 - ID4_ SINE ID -4 79 2 1 1374 350 304 58 10 chr11 103472360 103472463 -18371393 - PB1D10 SINE Alu 0 117 10 1 1374 732 172 22 7 chr11 103472834 103472969 -18370887 - B1_Mur1 SINE Alu 0 149 13 1 1374 332 343 20 0 chr11 103473175 103473274 -18370582 + PB1D10 SINE Alu 3 103 -14 1 1374 299 368 77 5 chr11 103473690 103473911 -18369945 - MIR SINE MIR -21 241 5 1 1374 363 329 13 77 chr11 103483125 103483280 -18360576 - RSINE1 SINE B4 -17 148 4 1 1374 1715 54 4 9 chr11 103484021 103484246 -18359610 - L1Md_F2 LINE L1 -12 6570 6347 1 1374 300 27 0 0 chr11 103484803 103484840 -18359016 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1374 600 111 0 0 chr11 103485984 103486083 -18357773 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1374 228 35 0 0 chr11 103486082 103486111 -18357745 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1374 243 338 0 25 chr11 103486137 103486216 -18357640 - ID2 SINE ID -6 77 1 1 1374 291 54 0 0 chr11 103487190 103487227 -18356629 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 1 1374 408 232 122 89 chr11 103487253 103487466 -18356390 - ID_B1 SINE B4 -2 222 3 1 1374 201 74 0 0 chr11 103487718 103487745 -18356111 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1 1374 1061 179 10 29 chr11 103489678 103489885 -18353971 - B3 SINE B2 -6 210 8 1 1374 1256 219 96 63 chr11 103491219 103491584 -18352272 + MTEb LTR MaLR 1 377 -2 1 1374 579 325 18 30 chr11 103491800 103491965 -18351891 - RSINE1 SINE B4 0 165 3 1 1374 348 0 58 0 chr11 103491972 103492024 -18351832 + (TTA)n Simple_repeat Simple_repeat 1 55 0 1 1374 22 56 0 0 chr11 103492377 103492413 -18351443 + AT_rich Low_complexity Low_complexity 1 36 0 1 1374 4169 107 106 37 chr11 103492767 103493524 -18350332 - RMER17D2 LTR ERVK 0 809 1 1 1374 439 253 180 30 chr11 103494384 103494584 -18349272 + B4A SINE B4 49 278 -14 1 1374 216 67 0 0 chr11 103494618 103494648 -18349208 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1374 704 231 92 0 chr11 103494856 103495051 -18348805 - B3 SINE B2 -3 213 1 1 1374 184 235 0 29 chr11 103495772 103495842 -18348014 + CT-rich Low_complexity Low_complexity 3 70 0 1 1374 276 345 0 11 chr11 103495842 103495933 -18347923 - PB1 SINE Alu -12 115 26 1 1374 210 207 0 3 chr11 103495956 103496012 -18347844 + MIRc SINE MIR 108 162 -100 1 1374 209 162 0 0 chr11 103496699 103496736 -18347120 - L2b LINE L2 -18 3357 3321 1 1374 218 259 0 0 chr11 103496925 103496979 -18346877 + L2 LINE L2 3028 3081 -338 1 1374 568 176 15 0 chr11 103497077 103497213 -18346643 + GA-rich Low_complexity Low_complexity 1 138 0 1 1374 439 261 126 12 chr11 103497393 103497560 -18346296 - B3 SINE B2 -30 186 1 1 1374 207 0 0 0 chr11 103497563 103497586 -18346270 + (TTG)n Simple_repeat Simple_repeat 3 25 0 1 1374 305 212 14 57 chr11 103497601 103497671 -18346185 - RSINE1 SINE B4 -97 68 2 1 1374 277 263 105 0 chr11 103497684 103497779 -18346077 - PB1D10 SINE Alu -1 116 12 1 1374 262 258 146 0 chr11 103498350 103498439 -18345417 - B1F SINE Alu -34 115 14 1 1374 498 61 0 0 chr11 103498925 103498991 -18344865 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1374 221 246 128 17 chr11 103499044 103499167 -18344689 + MIRm SINE MIR 80 207 -55 1 1374 401 317 65 5 chr11 103499387 103499571 -18344285 + L1MC4 LINE L1 7369 7563 -479 1 1374 230 286 36 0 chr11 103499808 103499892 -18343964 - MER53 DNA hAT -4 189 103 1 1374 252 333 0 0 chr11 103500619 103500697 -18343159 + MLT1K LTR MaLR 513 590 -5 1 1374 225 0 0 0 chr11 103501103 103501128 -18342728 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1374 367 257 98 27 chr11 103501535 103501647 -18342209 - PB1D7 SINE Alu 0 120 1 3 1374 346 310 25 58 chr11 103501676 103501796 -18342060 - L1MC5 LINE L1 -557 7404 7289 4 1374 1281 260 12 128 chr11 103501818 103502179 -18341677 - MTE2a LTR MaLR -2 377 54 5 1374 393 22 0 0 chr11 103502179 103502225 -18341631 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1374 306 0 0 0 chr11 103502225 103502258 -18341598 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1374 1281 260 12 128 chr11 103502258 103502301 -18341555 - MTE2a LTR MaLR -326 53 20 5 1374 701 242 12 82 chr11 103502800 103502971 -18340885 + B3 SINE B2 3 161 -55 8 1374 22 0 0 0 chr11 103502980 103503002 -18340854 + AT_rich Low_complexity Low_complexity 1 22 0 9 1374 3176 76 0 17 chr11 103503149 103503563 -18340293 - MTB_Mm LTR MaLR 0 407 1 1 1374 634 286 53 29 chr11 103504108 103504317 -18339539 - ID_B1 SINE B4 -9 215 2 1 1374 400 181 136 38 chr11 103504321 103504453 -18339403 - B1F SINE Alu 0 149 5 1 1374 242 336 27 45 chr11 103504461 103504573 -18339283 - ORR1E LTR MaLR -249 110 1 1 1374 306 269 159 40 chr11 103504885 103505036 -18338820 - MIRb SINE MIR -1 267 99 1 1374 622 271 18 199 chr11 103505457 103505793 -18338063 - B4 SINE B4 -17 275 1 1 1374 209 324 0 40 chr11 103505823 103505897 -18337959 - MIR SINE MIR -94 114 44 1 1374 376 277 50 0 chr11 103505928 103506029 -18337827 + PB1D10 SINE Alu 1 106 -11 1 1374 356 102 0 0 chr11 103506029 103506078 -18337778 - ORR1A4 LTR MaLR -7 322 274 1 1374 267 138 11 22 chr11 103506079 103506168 -18337688 + (TTTG)n Simple_repeat Simple_repeat 1 88 0 1 1374 477 0 0 0 chr11 103506177 103506230 -18337626 + (GTTTG)n Simple_repeat Simple_repeat 1 53 0 1 1374 1195 62 7 0 chr11 103506230 103506375 -18337481 - B1_Mus1 SINE Alu -1 147 2 2 1374 313 226 0 0 chr11 103506376 103506421 -18337435 - ORR1B1 LTR MaLR -41 326 282 2 1374 2131 90 23 7 chr11 103506421 103506723 -18337133 - ORR1A3 LTR MaLR -2 324 18 2 1374 1364 147 22 9 chr11 103506719 103506946 -18336910 - ORR1B1 LTR MaLR -124 270 41 2 1374 237 341 42 35 chr11 103507210 103507353 -18336503 + MamRep434 DNA TcMar 1 144 -282 2 1374 278 213 134 31 chr11 103508002 103508099 -18335757 + MIRb SINE MIR 22 128 -140 2 1374 274 264 0 54 chr11 103508207 103508299 -18335557 + MLT1F2 LTR MaLR 232 318 -251 2 1374 1832 133 145 6 chr11 103508302 103508619 -18335237 + ORR1B2 LTR MaLR 1 361 -6 2 1374 374 325 135 0 chr11 103508611 103508774 -18335082 + MLT1F2 LTR MaLR 368 552 -8 2 1374 486 288 86 29 chr11 103508882 103509057 -18334799 + B4A SINE B4 102 286 -6 2 1374 254 231 61 15 chr11 103509270 103509336 -18334520 + MER89 LTR ERV1 1 69 -490 2 1374 286 352 143 47 chr11 103509333 103509676 -18334180 + MER89 LTR ERV1 182 557 -2 2 1374 228 214 14 41 chr11 103510748 103510821 -18333035 + (CGGGG)n Simple_repeat Simple_repeat 3 73 0 2 1374 564 29 0 0 chr11 103511903 103511973 -18331883 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1374 208 189 42 42 chr11 103512086 103512158 -18331698 + T-rich Low_complexity Low_complexity 3 74 0 3 1374 459 257 0 0 chr11 103513587 103513688 -18330168 - PB1D10 SINE Alu -16 101 1 3 1374 286 345 80 25 chr11 103514102 103514299 -18329557 + MIRm SINE MIR 29 252 -16 3 1374 243 239 12 6 chr11 103514480 103514554 -18329302 - MIRm SINE MIR -122 154 77 3 1374 278 250 170 0 chr11 103515704 103515804 -18328052 + MIRb SINE MIR 104 220 -48 3 1374 22 0 0 0 chr11 103516096 103516118 -18327738 + AT_rich Low_complexity Low_complexity 1 22 0 3 1374 191 227 23 0 chr11 103517016 103517060 -18326796 - MIR SINE MIR -55 153 109 3 1374 265 311 44 11 chr11 103517852 103517943 -18325913 + MIR3 SINE MIR 66 159 -49 3 1374 346 293 12 157 chr11 103519178 103519344 -18324512 - MLT1F2 LTR MaLR -400 148 7 3 1374 751 336 28 21 chr11 103519426 103519712 -18324144 + B4A SINE B4 1 288 -4 4 1374 231 36 0 0 chr11 103520061 103520089 -18323767 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1374 285 281 100 15 chr11 103520137 103520267 -18323589 - L1MEe LINE L1 -4117 737 597 4 1374 23 0 0 0 chr11 103520267 103520290 -18323566 + AT_rich Low_complexity Low_complexity 1 23 0 4 1374 235 310 14 14 chr11 103520323 103520395 -18323461 - ID_B1 SINE B4 -4 220 149 4 1374 365 325 0 41 chr11 103520450 103520572 -18323284 - PB1D10 SINE Alu 0 117 1 4 1374 2684 160 2 5 chr11 103520695 103521115 -18322741 + MTC LTR MaLR 3 421 0 4 1374 300 307 110 28 chr11 103521181 103521399 -18322457 - L1ME1 LINE L1 -159 6020 5785 4 1374 337 263 111 0 chr11 103521422 103521521 -18322335 - PB1D7 SINE Alu -4 116 7 4 1374 888 278 69 46 chr11 103521559 103521951 -18321905 - L1ME1 LINE L1 -408 5771 5371 4 1374 344 288 0 43 chr11 103522222 103522351 -18321505 - RSINE1 SINE B4 -169 123 5 4 1374 255 325 105 35 chr11 103522416 103522588 -18321268 + MamRep605 Unknown Unknown 643 826 -50 5 1374 459 0 0 0 chr11 103523124 103523175 -18320681 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1374 222 62 0 0 chr11 103523597 103523629 -18320227 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1374 693 53 0 0 chr11 103524449 103524543 -18319313 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 1374 429 228 0 0 chr11 103525213 103525292 -18318564 + RSINE1 SINE B4 2 80 -85 5 1374 234 0 0 0 chr11 103525292 103525318 -18318538 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 5 1374 312 158 0 0 chr11 103525318 103525375 -18318481 + CT-rich Low_complexity Low_complexity 4 60 0 5 1374 225 0 0 0 chr11 103525383 103525408 -18318448 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1374 252 204 17 4 chr11 103525913 103525992 -18317864 + ID4 SINE ID 5 83 -69 5 1374 198 0 0 0 chr11 103526348 103526370 -18317486 + (GA)n Simple_repeat Simple_repeat 1 22 0 5 1374 267 292 113 34 chr11 103526370 103526547 -18317309 - MLT1K LTR MaLR -37 558 368 6 1374 238 263 15 0 chr11 103526650 103526716 -18317140 - MLT1K LTR MaLR -303 141 84 6 1374 600 272 61 0 chr11 103528930 103529077 -18314779 + B3A SINE B2 1 156 -42 6 1374 230 193 18 0 chr11 103529077 103529134 -18314722 + CT-rich Low_complexity Low_complexity 3 60 0 6 1374 783 158 189 73 chr11 103529172 103529217 -18314639 + B3 SINE B2 1 40 -176 6 1374 3199 51 5 8 chr11 103529217 103529614 -18314242 + MTA_Mm LTR MaLR 1 396 0 6 1374 7978 64 21 70 chr11 103529614 103530769 -18313087 + MTA_Mm-int LTR MaLR 1 1098 0 6 1374 3189 44 15 8 chr11 103530769 103531162 -18312694 + MTA_Mm LTR MaLR 1 396 0 6 1374 783 158 189 73 chr11 103531162 103531305 -18312551 + B3 SINE B2 41 211 -5 6 1374 840 121 0 0 chr11 103531392 103531524 -18312332 + (TC)n Simple_repeat Simple_repeat 1 132 0 6 1374 591 204 174 8 chr11 103531532 103531691 -18312165 - B3 SINE B2 -28 188 1 6 1374 297 328 56 24 chr11 103532199 103532324 -18311532 + MLT1G3 LTR MaLR 163 291 -304 6 1374 297 288 14 14 chr11 103532400 103532474 -18311382 + MLT1G3 LTR MaLR 423 496 -99 6 1374 1077 232 161 28 chr11 103532585 103532909 -18310947 + MTEa LTR MaLR 7 373 -6 6 1374 882 185 0 0 chr11 103533156 103533389 -18310467 + (TA)n Simple_repeat Simple_repeat 1 233 0 6 1374 259 345 81 20 chr11 103533409 103533557 -18310299 - RSINE1 SINE B4 -8 157 1 7 1374 213 330 10 67 chr11 103533785 103533889 -18309967 - MIRm SINE MIR -138 138 41 7 1374 259 304 8 89 chr11 103534414 103534447 -18309409 - ID_B1 SINE B4 -31 193 82 7 1374 287 276 79 22 chr11 103534447 103534536 -18309320 - B1F2 SINE Alu -55 94 1 7 1374 658 252 39 48 chr11 103534552 103534760 -18309096 - B3 SINE B2 -10 206 1 7 1374 845 168 99 50 chr11 103537516 103537717 -18306139 - B3 SINE B2 -5 211 1 7 1374 487 235 68 61 chr11 103541034 103541197 -18302659 + B4 SINE B4 1 164 -128 7 1374 474 237 17 17 chr11 103541664 103541780 -18302076 - PB1D10 SINE Alu 0 117 2 7 1374 183 80 0 0 chr11 103542148 103542173 -18301683 + (TATATG)n Simple_repeat Simple_repeat 6 30 0 7 1374 569 206 63 0 chr11 103542173 103542299 -18301557 - B3 SINE B2 -47 169 36 7 1374 577 212 8 25 chr11 103543025 103543146 -18300710 + PB1D9 SINE Alu 2 120 0 8 1374 243 203 0 0 chr11 103543146 103543205 -18300651 + GA-rich Low_complexity Low_complexity 4 62 0 8 1374 834 218 0 0 chr11 103543553 103543695 -18300161 + B1_Mur1 SINE Alu 1 142 -7 8 1374 312 329 0 0 chr11 103543712 103543794 -18300062 + ID4_ SINE ID 2 83 0 8 1374 335 250 27 0 chr11 103545969 103546076 -18297780 - MIR SINE MIR -57 211 93 8 1375 333 0 0 0 chr11 103547373 103547410 -18296446 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1375 279 0 0 0 chr11 103547507 103547538 -18296318 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1375 1023 103 7 27 chr11 103549031 103549181 -18294675 + B1_Mur3 SINE Alu 3 149 0 8 1375 415 266 186 46 chr11 103550815 103551033 -18292823 - MIR SINE MIR 0 268 8 8 1375 422 216 65 47 chr11 103551284 103551391 -18292465 - PB1D10 SINE Alu -1 116 8 8 1375 355 245 67 29 chr11 103551313 103551418 -18292438 - ID_B1 SINE B4 -53 171 63 9 1375 323 311 0 22 chr11 103552468 103552548 -18291308 + PB1D10 SINE Alu 3 81 -36 9 1375 347 282 0 0 chr11 103552548 103552619 -18291237 + ID4 SINE ID 4 74 -9 9 1375 323 311 0 22 chr11 103552619 103552630 -18291226 + PB1D10 SINE Alu 82 92 -25 9 1375 1337 283 90 59 chr11 103552928 103553593 -18290263 + Lx9 LINE L1 6959 7644 0 9 1375 388 322 182 31 chr11 103553779 103554164 -18289692 + L1M5 LINE L1 5257 5699 -474 9 1375 768 181 0 61 chr11 103554381 103554528 -18289328 - B1_Mur2 SINE Alu -7 142 5 9 1375 564 280 24 0 chr11 103554718 103554843 -18289013 + RSINE1 SINE B4 3 130 -35 9 1375 261 0 0 0 chr11 103554861 103554890 -18288966 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1375 438 165 0 0 chr11 103555673 103555752 -18288104 + GA-rich Low_complexity Low_complexity 2 80 0 9 1375 233 208 192 13 chr11 103556402 103556480 -18287376 + MT2B2 LTR ERVL 161 252 -332 9 1375 240 377 19 0 chr11 103556562 103556668 -18287188 + MIR SINE MIR 25 132 -76 1 1375 777 183 14 7 chr11 103556789 103556932 -18286924 + B1F2 SINE Alu 5 148 -1 1 1375 426 353 23 0 chr11 103557060 103557193 -18286663 + B1_Mur1 SINE Alu 5 140 -9 1 1375 200 189 0 0 chr11 103557557 103557594 -18286262 + CT-rich Low_complexity Low_complexity 3 39 0 1 1375 1427 71 49 0 chr11 103557972 103558156 -18285700 + B2_Mm2 SINE B2 1 193 -2 1 1375 234 0 0 0 chr11 103558377 103558403 -18285453 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1375 252 331 20 122 chr11 103560361 103560509 -18283347 + MTE2b LTR MaLR 158 290 -89 1 1375 595 331 163 16 chr11 103560519 103560838 -18283018 - FordPrefect DNA Tip100 -168 1515 1150 1 1375 949 292 38 72 chr11 103560870 103561217 -18282639 - MTEa LTR MaLR -5 374 40 1 1375 440 171 0 0 chr11 103561273 103561349 -18282507 - B3A SINE B2 -121 77 2 1 1375 827 311 58 58 chr11 103561469 103561794 -18282062 - FordPrefect DNA Tip100 -693 990 666 1 1375 460 216 78 10 chr11 103561900 103562003 -18281853 - PB1D7 SINE Alu -10 110 1 1 1375 245 375 36 0 chr11 103562674 103562786 -18281070 + PB1D9 SINE Alu 5 120 0 1 1375 578 146 10 40 chr11 103562802 103562902 -18280954 + PB1D9 SINE Alu 17 113 -7 1 1375 294 358 88 13 chr11 103563178 103563436 -18280420 + L2c LINE L2 2930 3210 -177 1 1375 239 0 0 31 chr11 103563772 103563804 -18280052 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1 1375 1197 199 0 5 chr11 103565345 103565562 -18278294 - B3 SINE B2 0 216 1 1 1375 372 314 78 120 chr11 103566888 103567196 -18276660 + MER44A DNA MER2_type 5 299 -40 1 1375 210 266 37 25 chr11 103567291 103567372 -18276484 + MIRm SINE MIR 45 126 -150 1 1375 446 215 124 84 chr11 103567498 103567522 -18276334 - B2_Mm2 SINE B2 -10 185 153 1 1375 800 48 9 0 chr11 103567522 103567627 -18276229 + (TATG)n Simple_repeat Simple_repeat 1 106 0 1 1375 681 215 124 84 chr11 103567627 103567780 -18276076 - B3A SINE B2 -43 152 1 1 1375 210 324 0 0 chr11 103568125 103568193 -18275663 + MIR SINE MIR 119 186 -76 1 1375 776 202 6 0 chr11 103569498 103569859 -18273997 + (TCCA)n Simple_repeat Simple_repeat 1 363 0 1 1375 281 244 12 0 chr11 103569876 103569962 -18273894 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 1 1375 281 26 26 0 chr11 103570662 103570700 -18273156 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1375 614 248 0 60 chr11 103572513 103572663 -18271193 + RSINE1 SINE B4 2 142 -23 1 1375 655 197 24 0 chr11 103572658 103572785 -18271071 + B1_Mur1 SINE Alu 12 141 -8 1 1375 180 283 96 48 chr11 103573988 103574092 -18269764 - MIR3 SINE MIR -27 181 73 1 1375 727 191 0 0 chr11 103574338 103574464 -18269392 + B1_Mur1 SINE Alu 12 137 -12 1 1375 180 111 0 0 chr11 103574482 103574509 -18269347 + (GAA)n Simple_repeat Simple_repeat 1 27 0 1 1375 762 303 10 0 chr11 103574671 103574866 -18268990 + ID_B1 SINE B4 2 198 -26 1 1375 243 0 0 0 chr11 103574876 103574903 -18268953 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1375 1858 208 64 14 chr11 103575308 103575727 -18268129 - Lx8 LINE L1 -271 7202 6763 1 1375 229 217 22 0 chr11 103576191 103576237 -18267619 + GA-rich Low_complexity Low_complexity 3 49 0 1 1375 270 352 56 0 chr11 103576943 103577068 -18266788 + MIRb SINE MIR 66 197 -71 1 1375 234 173 0 37 chr11 103577071 103577125 -18266731 + B3 SINE B2 163 214 -2 1 1375 538 323 89 86 chr11 103577345 103577380 -18266476 - B4 SINE B4 0 292 259 1 1375 1323 96 11 0 chr11 103577380 103577557 -18266299 - B2_Mm2 SINE B2 -16 179 1 1 1375 538 323 89 86 chr11 103577557 103577812 -18266044 - B4 SINE B4 -34 258 2 1 1375 1034 96 176 0 chr11 103578179 103578366 -18265490 + URR1B DNA MER1_type 6 225 0 1 1375 201 255 0 18 chr11 103578558 103578614 -18265242 + GA-rich Low_complexity Low_complexity 6 60 0 1 1375 186 103 0 0 chr11 103579019 103579048 -18264808 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1375 716 276 35 51 chr11 103579052 103579308 -18264548 - B4A SINE B4 -14 278 27 1 1375 257 273 0 15 chr11 103579918 103579985 -18263871 + MIR SINE MIR 85 150 -58 1 1375 306 200 0 0 chr11 103580720 103580775 -18263081 + PB1D10 SINE Alu 19 73 -44 1 1375 196 380 0 48 chr11 103580998 103581081 -18262775 + L2b LINE L2 3263 3369 -18 1 1375 213 149 0 21 chr11 103581221 103581269 -18262587 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 1 1375 929 192 0 0 chr11 103581366 103581512 -18262344 + B1_Mus2 SINE Alu 1 146 -1 1 1375 1066 71 64 0 chr11 103581543 103581683 -18262173 + B1_Mur4 SINE Alu 2 150 0 1 1375 244 196 17 35 chr11 103581995 103582053 -18261803 + GA-rich Low_complexity Low_complexity 2 58 0 1 1375 702 91 0 0 chr11 103582273 103582372 -18261484 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 1375 422 242 10 0 chr11 103582390 103582489 -18261367 + B4A SINE B4 128 227 -65 1 1375 326 247 27 27 chr11 103582569 103582644 -18261212 + B4A SINE B4 218 292 0 1 1375 282 362 93 44 chr11 103582865 103583047 -18260809 + MIRb SINE MIR 58 248 -20 1 1375 241 312 105 35 chr11 103584422 103584526 -18259330 + MIRb SINE MIR 45 159 -109 1 1375 207 0 0 0 chr11 103584526 103584549 -18259307 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1375 241 312 105 35 chr11 103584549 103584587 -18259269 + MIRb SINE MIR 160 197 -71 1 1375 871 258 148 19 chr11 103584645 103584902 -18258954 + B4 SINE B4 2 291 -1 1 1375 557 329 12 6 chr11 103584930 103585092 -18258764 + RSINE1 SINE B4 3 165 0 1 1375 789 143 7 36 chr11 103585094 103585232 -18258624 - B1_Mm SINE Alu -5 142 9 1 1375 710 206 55 50 chr11 103585258 103585457 -18258399 - B3 SINE B2 0 216 17 1 1375 249 33 0 0 chr11 103585457 103585487 -18258369 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1375 306 271 86 29 chr11 103585548 103585723 -18258133 + L1MC4 LINE L1 7267 7451 -591 1 1375 363 113 0 0 chr11 103586112 103586174 -18257682 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1375 1444 49 0 0 chr11 103586240 103586410 -18257446 - MTB LTR MaLR -8 392 223 1 1375 2362 82 22 17 chr11 103586410 103586934 -18256922 + ORR1A2 LTR MaLR 1 386 -8 1 1375 1055 265 43 25 chr11 103586945 103587224 -18256632 - B4A SINE B4 -6 286 3 1 1375 371 200 89 13 chr11 103588315 103588479 -18255377 + B4 SINE B4 8 214 -78 1 1375 234 0 0 0 chr11 103588479 103588505 -18255351 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1375 243 269 0 0 chr11 103588531 103588639 -18255217 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1375 295 288 80 0 chr11 103588689 103588814 -18255042 + L2a LINE L2 3274 3408 -18 1 1375 243 276 138 29 chr11 103589064 103589202 -18254654 - Charlie8 DNA MER1_type -2154 274 122 1 1375 21 36 0 0 chr11 103589970 103589998 -18253858 + AT_rich Low_complexity Low_complexity 1 28 0 1 1375 386 325 123 26 chr11 103592691 103592846 -18251010 - MER91A DNA Tip100 -23 173 4 1 1375 186 313 0 56 chr11 103592925 103592996 -18250860 + MIR SINE MIR 81 147 -61 1 1375 256 227 26 171 chr11 103594236 103594353 -18249503 + B1F SINE Alu 3 120 -29 1 1375 549 223 9 26 chr11 103595504 103595619 -18248237 + PB1D10 SINE Alu 2 114 -3 1 1375 215 324 28 0 chr11 103595619 103595690 -18248166 - MER5A DNA MER1_type -56 133 61 1 1375 266 73 0 24 chr11 103595981 103596023 -18247833 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 1 1375 477 0 0 0 chr11 103596201 103596254 -18247602 + (CAGG)n Simple_repeat Simple_repeat 1 53 0 1 1375 207 0 0 0 chr11 103597373 103597396 -18246460 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1375 590 290 136 42 chr11 103597415 103597680 -18246176 + B4A SINE B4 2 281 -11 1 1375 234 0 0 0 chr11 103597702 103597728 -18246128 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1375 21 71 0 0 chr11 103597917 103597959 -18245897 + AT_rich Low_complexity Low_complexity 1 42 0 1 1375 449 322 13 7 chr11 103599910 103600060 -18243796 + MIR SINE MIR 111 261 -1 1 1375 642 171 8 8 chr11 103602017 103602135 -18241721 + PB1D9 SINE Alu 1 118 -2 1 1375 297 128 0 0 chr11 103602242 103602289 -18241567 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 1 1375 232 293 152 17 chr11 103604717 103604835 -18239021 + MIRc SINE MIR 84 217 -51 1 1375 299 288 32 140 chr11 103605191 103605377 -18238479 - MT2B LTR ERVL -269 332 167 1 1375 537 252 0 16 chr11 103605258 103605379 -18238477 - B1_Mur1 SINE Alu -30 119 1 1 1375 1261 169 56 9 chr11 103605403 103605618 -18238238 - URR1B DNA MER1_type 0 225 1 1 1375 475 280 15 15 chr11 103606126 103606260 -18237596 + ID_B1 SINE B4 81 214 -10 1 1375 503 320 22 22 chr11 103606385 103606567 -18237289 + L1ME1 LINE L1 4569 4750 -1396 1 1375 1165 274 79 19 chr11 103606784 103607253 -18236603 + L1ME1 LINE L1 5374 5870 -309 1 1375 770 252 80 20 chr11 103607797 103608045 -18235811 - B4 SINE B4 -27 265 2 1 1375 224 348 101 0 chr11 103608153 103608242 -18235614 + MIRb SINE MIR 27 124 -144 1 1375 315 0 0 0 chr11 103609304 103609339 -18234517 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1375 230 259 0 0 chr11 103609621 103609675 -18234181 - MIR SINE MIR -10 252 199 1 1375 180 0 0 0 chr11 103613996 103614016 -18229840 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1375 288 0 0 0 chr11 103614016 103614047 -18229809 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1375 345 176 0 0 chr11 103614255 103614329 -18229527 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1375 264 59 0 0 chr11 103614326 103614360 -18229496 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1 1375 211 288 96 36 chr11 103614902 103614985 -18228871 - MIRc SINE MIR -98 170 83 1 1375 903 201 50 40 chr11 103615263 103615465 -18228391 + ID_B1 SINE B4 3 206 -18 1 1375 211 200 25 0 chr11 103615471 103615511 -18228345 + GA-rich Low_complexity Low_complexity 3 43 0 1 1375 324 0 0 0 chr11 103615714 103615750 -18228106 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1375 1266 90 0 0 chr11 103616048 103616226 -18227630 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 1 1375 287 282 0 66 chr11 103616243 103616319 -18227537 - ID4 SINE ID -8 75 5 2 1375 930 132 239 11 chr11 103616406 103616590 -18227266 + URR1A DNA MER1_type 1 226 0 2 1375 1266 34 7 0 chr11 103616608 103616755 -18227101 + B1_Mus1 SINE Alu 1 148 0 2 1375 252 0 0 0 chr11 103616778 103616806 -18227050 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 2 1375 786 191 7 20 chr11 103616853 103617003 -18226853 + B1_Mur1 SINE Alu 1 148 -1 2 1375 213 222 0 0 chr11 103617384 103617429 -18226427 + GA-rich Low_complexity Low_complexity 4 48 0 2 1375 423 38 0 0 chr11 103617803 103617856 -18226000 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1375 726 113 33 0 chr11 103617857 103617993 -18225863 + B1_Mus1 SINE Alu 2 142 -6 2 1375 244 282 0 60 chr11 103618069 103618152 -18225704 - MER2 DNA MER2_type -148 197 120 2 1375 675 186 35 14 chr11 103618164 103618306 -18225550 + B1_Mur2 SINE Alu 5 149 0 2 1375 486 0 0 0 chr11 103618315 103618369 -18225487 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 2 1375 1224 54 0 0 chr11 103618369 103618516 -18225340 + B1_Mus2 SINE Alu 1 147 0 2 1375 278 155 0 33 chr11 103618516 103618565 -18225291 + A-rich Low_complexity Low_complexity 10 57 0 2 1375 1688 26 0 0 chr11 103618629 103618818 -18225038 + B2_Mm1a SINE B2 1 189 -4 2 1375 269 51 26 0 chr11 103618894 103618933 -18224923 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 2 1375 1146 74 14 0 chr11 103619016 103619164 -18224692 - B1_Mur4 SINE Alu 0 150 1 2 1375 227 241 0 17 chr11 103620012 103620071 -18223785 - MIR SINE MIR -131 131 74 2 1375 591 286 53 0 chr11 103621404 103621575 -18222281 + ID_B1 SINE B4 42 221 -3 2 1375 841 307 82 7 chr11 103621579 103621848 -18222008 + B4A SINE B4 3 291 -1 2 1375 222 91 0 0 chr11 103622119 103622152 -18221704 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1375 336 83 0 0 chr11 103622157 103622205 -18221651 + (T)n Simple_repeat Simple_repeat 1 48 0 2 1375 1230 68 0 0 chr11 103622205 103622352 -18221504 - B1_Mus2 SINE Alu 0 147 1 2 1375 538 276 54 22 chr11 103622359 103622544 -18221312 - B3A SINE B2 -6 192 2 2 1375 931 176 170 0 chr11 103622764 103622797 -18221059 - B3 SINE B2 0 216 183 2 1375 522 0 0 0 chr11 103622797 103622855 -18221001 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1375 931 176 170 0 chr11 103622855 103623003 -18220853 - B3 SINE B2 -34 182 5 2 1375 1207 75 0 0 chr11 103623058 103623205 -18220651 - B1_Mus2 SINE Alu 0 147 1 2 1375 993 187 19 63 chr11 103623211 103623240 -18220616 - B3A SINE B2 0 198 182 2 1375 297 51 0 0 chr11 103623240 103623279 -18220577 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 2 1375 993 187 19 63 chr11 103623279 103623455 -18220401 - B3A SINE B2 -17 181 2 2 1375 852 259 23 28 chr11 103623457 103623675 -18220181 - ID_B1 SINE B4 -7 217 1 2 1375 297 0 0 0 chr11 103624129 103624162 -18219694 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1375 239 0 32 0 chr11 103624295 103624326 -18219530 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1375 774 32 0 0 chr11 103625822 103625915 -18217941 + (GGGA)n Simple_repeat Simple_repeat 3 95 0 2 1375 252 0 0 0 chr11 103626774 103626802 -18217054 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1375 211 322 0 0 chr11 103627053 103627112 -18216744 + C-rich Low_complexity Low_complexity 3 61 0 2 1375 328 66 0 76 chr11 103628777 103628843 -18215013 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 2 1375 203 189 0 0 chr11 103629200 103629237 -18214619 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1375 3125 77 7 2 chr11 103629239 103629642 -18214214 - MTB_Mm LTR MaLR -2 405 1 2 1375 436 212 159 0 chr11 103629646 103629759 -18214097 + B3 SINE B2 86 216 0 2 1375 275 0 29 0 chr11 103630590 103630625 -18213231 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1375 486 0 0 0 chr11 103630625 103630678 -18213178 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1375 228 35 0 0 chr11 103631211 103631240 -18212616 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1375 204 382 13 13 chr11 103633766 103633925 -18209931 + C-rich Low_complexity Low_complexity 2 160 0 2 1375 309 82 0 0 chr11 103639467 103639516 -18204340 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 2 1375 486 0 0 0 chr11 103640372 103640426 -18203430 + (TTTTG)n Simple_repeat Simple_repeat 4 57 0 2 1375 690 167 8 45 chr11 103640426 103640558 -18203298 - B1_Mus2 SINE Alu -12 135 9 2 1375 206 302 75 53 chr11 103640606 103640739 -18203117 + MIR3 SINE MIR 13 148 -60 2 1375 872 174 227 0 chr11 103641235 103641407 -18202449 - B3 SINE B2 -4 212 2 2 1375 225 0 0 0 chr11 103641420 103641445 -18202411 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1375 189 279 16 16 chr11 103642838 103642900 -18200956 + MIRc SINE MIR 110 171 -97 2 1375 405 39 0 0 chr11 103644598 103644649 -18199207 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1375 812 298 26 9 chr11 103644696 103644926 -18198930 - B4 SINE B4 -4 288 55 2 1375 287 324 120 52 chr11 103645040 103645232 -18198624 + L4 LINE RTE 1715 1919 -110 2 1375 466 270 0 35 chr11 103645442 103645557 -18198299 + PB1D10 SINE Alu 7 117 0 2 1375 792 185 51 0 chr11 103645752 103645909 -18197947 - ID_B1 SINE B4 -55 169 5 2 1375 587 269 57 0 chr11 103646290 103646431 -18197425 + B1_Mur3 SINE Alu 1 149 0 2 1375 209 243 62 7 chr11 103646763 103646839 -18197017 - MIR SINE MIR -79 189 109 2 1375 273 350 109 50 chr11 103647104 103647342 -18196514 + MER115 DNA Tip100 8 259 -434 2 1375 311 270 181 7 chr11 103648178 103648316 -18195540 + MIRb SINE MIR 64 225 -43 2 1375 180 0 0 0 chr11 103648664 103648684 -18195172 + (TCC)n Simple_repeat Simple_repeat 2 21 0 2 1375 589 243 143 6 chr11 103649957 103650139 -18193717 - B4A SINE B4 -85 207 1 2 1375 582 156 191 32 chr11 103650173 103650283 -18193573 + B1_Mus2 SINE Alu 2 134 -13 2 1375 243 0 0 0 chr11 103650283 103650310 -18193546 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 2 1375 582 156 191 32 chr11 103650310 103650325 -18193531 + B1_Mus2 SINE Alu 135 147 0 2 1375 736 179 65 0 chr11 103650457 103650580 -18193276 - B1_Mur1 SINE Alu -18 131 1 2 1375 203 271 0 20 chr11 103650815 103650864 -18192992 + polypyrimidine Low_complexity Low_complexity 5 52 0 2 1375 609 179 89 8 chr11 103651844 103651968 -18191888 - B1F2 SINE Alu -15 134 1 2 1375 586 223 149 31 chr11 103651988 103652182 -18191674 - ID_B1 SINE B4 -3 221 5 2 1375 532 242 67 15 chr11 103652186 103652320 -18191536 - B1F2 SINE Alu -1 148 8 2 1375 687 267 14 0 chr11 103653741 103653887 -18189969 + B1F2 SINE Alu 2 149 0 2 1375 529 318 52 0 chr11 103654712 103654885 -18188971 + MIRb SINE MIR 81 262 -6 2 1375 308 257 89 89 chr11 103655288 103655412 -18188444 + MT2B LTR ERVL 137 260 -341 2 1375 605 202 0 0 chr11 103655323 103655427 -18188429 + B1_Mur1 SINE Alu 19 122 -27 2 1375 331 272 12 24 chr11 103655531 103655614 -18188242 + ID4_ SINE ID 2 83 0 2 1375 501 17 0 0 chr11 103655644 103655702 -18188154 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1375 450 0 0 0 chr11 103655702 103655751 -18188105 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1375 406 211 237 47 chr11 103657394 103657563 -18186293 + ID_B1 SINE B4 1 201 -23 2 1375 797 172 272 0 chr11 103663889 103664058 -18179798 + B3 SINE B2 2 216 0 2 1375 357 216 59 0 chr11 103664115 103664217 -18179639 - L1MB4 LINE L1 -39 6141 6034 2 1375 230 267 107 0 chr11 103664650 103664725 -18179131 + B4 SINE B4 1 83 -209 2 1375 763 193 21 0 chr11 103664795 103664935 -18178921 + ID_B1 SINE B4 81 223 -1 2 1375 377 333 0 0 chr11 103665122 103665236 -18178620 + PB1D10 SINE Alu 2 115 -2 2 1375 260 227 15 15 chr11 103665251 103665318 -18178538 + BC1_Mm scRNA scRNA 14 80 -72 2 1375 527 249 34 62 chr11 103667159 103667335 -18176521 + MIR SINE MIR 60 230 -32 2 1375 315 211 64 26 chr11 103667737 103667815 -18176041 - PB1D10 SINE Alu -12 105 25 2 1375 467 33 16 0 chr11 103668871 103668932 -18174924 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1375 304 224 0 29 chr11 103670008 103670077 -18173779 + MamRep488 DNA hAT 70 136 -83 2 1375 25 0 0 0 chr11 103671257 103671282 -18172574 + GC_rich Low_complexity Low_complexity 1 25 0 2 1375 45 75 0 0 chr11 103671338 103671432 -18172424 + GC_rich Low_complexity Low_complexity 1 94 0 2 1375 357 310 130 0 chr11 103673070 103673170 -18170686 - RSINE1 SINE B4 -13 152 40 2 1375 269 227 129 5 chr11 103673291 103673426 -18170430 + MIRb SINE MIR 16 175 -93 2 1375 204 267 241 28 chr11 103674367 103674475 -18169381 + MIR SINE MIR 21 151 -57 2 1375 612 186 65 0 chr11 103674493 103674617 -18169239 + B1_Mur2 SINE Alu 2 133 -16 2 1376 24 0 0 0 chr11 103679190 103679214 -18164642 + AT_rich Low_complexity Low_complexity 1 24 0 2 1376 30 0 0 0 chr11 103679242 103679272 -18164584 + AT_rich Low_complexity Low_complexity 1 30 0 2 1376 26 0 0 0 chr11 103680299 103680325 -18163531 + AT_rich Low_complexity Low_complexity 1 26 0 2 1376 375 235 47 47 chr11 103680486 103680593 -18163263 + PB1D9 SINE Alu 9 115 -5 2 1376 449 248 85 0 chr11 103680983 103681112 -18162744 - B1_Mur2 SINE Alu -6 143 4 2 1376 1045 67 16 53 chr11 103681538 103681728 -18162128 + Lx LINE L1 6472 6654 0 2 1376 922 141 28 0 chr11 103682343 103682485 -18161371 - B1_Mur4 SINE Alu 0 150 5 2 1376 180 0 0 0 chr11 103682495 103682515 -18161341 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1376 790 223 19 0 chr11 103682536 103682693 -18161163 - URR1B DNA MER1_type -1 224 65 2 1376 318 290 104 52 chr11 103682693 103682728 -18161128 + CYRA11_Mm Unknown Y-chromosome 172 373 -244 3 1376 520 139 116 0 chr11 103682728 103682814 -18161042 - B1_Mus1 SINE Alu -42 106 11 3 1376 437 207 147 179 chr11 103682814 103682841 -18161015 - B4 SINE B4 -81 206 1 3 1376 584 170 50 0 chr11 103682841 103682941 -18160915 - B3 SINE B2 -111 105 1 3 1376 21 0 0 0 chr11 103683893 103683914 -18159942 + AT_rich Low_complexity Low_complexity 1 21 0 3 1376 230 100 31 62 chr11 103684618 103684682 -18159174 + A-rich Low_complexity Low_complexity 2 63 0 3 1376 1169 82 7 0 chr11 103685579 103685725 -18158131 - B1_Mus1 SINE Alu 0 148 2 3 1376 184 288 44 29 chr11 103687362 103687430 -18156426 - L2a LINE L2 -1 3425 3357 3 1376 878 167 7 0 chr11 103687646 103687790 -18156066 + B1_Mus2 SINE Alu 3 147 0 3 1376 538 187 0 17 chr11 103688746 103688849 -18155007 - PB1D7 SINE Alu -31 118 25 3 1376 201 74 0 0 chr11 103689269 103689296 -18154560 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1376 482 111 56 0 chr11 103690186 103690258 -18153598 - PB1D9 SINE Alu -1 119 44 3 1376 400 164 0 0 chr11 103690255 103690322 -18153534 + B1_Mur1 SINE Alu 76 142 -7 3 1376 214 73 49 0 chr11 103690943 103690984 -18152872 + (TTTCC)n Simple_repeat Simple_repeat 4 46 0 3 1376 1039 120 0 0 chr11 103690998 103691140 -18152716 - B1_Mur4 SINE Alu -8 142 1 3 1376 252 0 0 0 chr11 103691249 103691277 -18152579 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1376 241 312 58 112 chr11 103693784 103694026 -18149830 - RMER21B LTR ERV1 -31 811 583 3 1376 333 275 118 45 chr11 103694294 103694515 -18149341 + L2a LINE L2 3190 3426 0 3 1376 214 245 19 0 chr11 103694576 103694629 -18149227 + CT-rich Low_complexity Low_complexity 5 58 0 3 1376 682 184 58 14 chr11 103695149 103695287 -18148569 - B1_Mur3 SINE Alu -2 147 4 3 1376 1713 26 0 0 chr11 103695616 103695808 -18148048 - B2_Mm1a SINE B2 0 193 2 3 1376 1133 76 7 0 chr11 103696188 103696332 -18147524 - B1_Mus2 SINE Alu 0 147 3 3 1376 961 148 0 32 chr11 103696873 103697027 -18146829 - B1_Mur4 SINE Alu 0 150 2 3 1376 528 214 108 97 chr11 103697051 103697227 -18146629 + B3 SINE B2 1 178 -38 3 1376 631 111 53 44 chr11 103698332 103698445 -18145411 + PB1D9 SINE Alu 1 114 -6 3 1376 193 29 29 29 chr11 103698449 103698484 -18145372 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1376 217 125 24 48 chr11 103698789 103698831 -18145025 - PB1D10 SINE Alu -1 116 76 3 1376 233 204 0 0 chr11 103698837 103698881 -18144975 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1376 415 316 72 31 chr11 103699609 103699802 -18144054 - MIRc SINE MIR -21 247 47 3 1376 219 229 0 0 chr11 103700052 103700100 -18143756 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1376 198 0 0 0 chr11 103700423 103700445 -18143411 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1376 21 0 0 0 chr11 103700835 103700856 -18143000 + AT_rich Low_complexity Low_complexity 1 21 0 3 1376 660 241 0 43 chr11 103700955 103701094 -18142762 - ID_B1 SINE B4 -5 219 87 3 1376 473 246 26 17 chr11 103701101 103701217 -18142639 - PB1D10 SINE Alu 0 117 1 3 1376 1234 28 0 0 chr11 103701561 103701696 -18142160 + B1_Mus1 SINE Alu 5 139 -9 3 1376 288 0 0 0 chr11 103701696 103701728 -18142128 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1376 706 268 7 102 chr11 103703782 103704056 -18139800 - L1MB8 LINE L1 -12 6166 5919 3 1376 1178 193 19 0 chr11 103704057 103704269 -18139587 + B3 SINE B2 1 216 0 3 1376 489 34 0 0 chr11 103704276 103704335 -18139521 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1376 1283 39 11 11 chr11 103704352 103704532 -18139324 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1376 313 176 13 13 chr11 103704535 103704610 -18139246 + GA-rich Low_complexity Low_complexity 4 78 0 3 1376 630 297 134 22 chr11 103704610 103705103 -18138753 - L1MB8 LINE L1 -272 5906 5359 3 1376 593 80 11 0 chr11 103705128 103705216 -18138640 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 1376 761 140 22 22 chr11 103705494 103705633 -18138223 - B1_Mur3 SINE Alu -1 148 10 3 1376 370 261 48 76 chr11 103705521 103705666 -18138190 - MT2B LTR ERVL -322 279 139 3 1376 475 122 0 22 chr11 103705756 103705848 -18138008 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1376 387 309 44 50 chr11 103705947 103706107 -18137749 + RSINE1 SINE B4 7 165 0 3 1376 24 0 0 0 chr11 103706332 103706356 -18137500 + AT_rich Low_complexity Low_complexity 1 24 0 3 1376 325 202 40 110 chr11 103706531 103706631 -18137225 + PB1 SINE Alu 33 125 -2 3 1376 348 256 11 0 chr11 103706640 103706730 -18137126 + BC1_Mm scRNA scRNA 13 103 -49 3 1376 259 241 172 23 chr11 103707425 103707561 -18136295 + B3 SINE B2 51 192 -3 3 1376 25 0 0 0 chr11 103708359 103708384 -18135472 + AT_rich Low_complexity Low_complexity 1 25 0 3 1376 307 236 219 0 chr11 103709450 103709573 -18134283 - B4A SINE B4 -52 240 91 3 1376 564 198 22 1 chr11 103709466 103709578 -18134278 - B1_Mm SINE Alu -5 115 1 3 1376 1254 261 35 32 chr11 103710368 103710709 -18133147 + RMER15 LTR ERVL 4 345 -230 3 1376 900 176 6 24 chr11 103710873 103711042 -18132814 + RMER15 LTR ERVL 304 469 -106 3 1376 884 145 20 14 chr11 103711471 103711618 -18132238 + B1_Mur4 SINE Alu 1 148 -2 3 1376 276 30 0 0 chr11 103711641 103711674 -18132182 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1376 196 245 75 0 chr11 103711683 103711736 -18132120 - L2 LINE L2 -993 2426 2370 3 1376 259 374 97 46 chr11 103712020 103712258 -18131598 + MLT1I LTR MaLR 154 403 -8 3 1376 216 0 0 0 chr11 103712299 103712323 -18131533 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1376 1146 95 0 0 chr11 103712409 103712556 -18131300 + B1_Mus1 SINE Alu 1 147 -1 3 1376 719 211 23 0 chr11 103712710 103712843 -18131013 - B1_Mur2 SINE Alu -13 136 1 3 1376 22 0 0 0 chr11 103713471 103713493 -18130363 + GC_rich Low_complexity Low_complexity 1 22 0 3 1376 334 299 46 30 chr11 103713631 103713762 -18130094 + ID_B1 SINE B4 84 216 -8 3 1376 369 0 0 0 chr11 103713762 103713803 -18130053 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1376 243 0 0 0 chr11 103714505 103714532 -18129324 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1376 396 0 0 0 chr11 103716741 103716785 -18127071 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1376 1574 201 98 14 chr11 103717099 103717527 -18126329 + Lx9 LINE L1 7173 7636 -8 3 1376 332 169 17 0 chr11 103717712 103717771 -18126085 - PB1D7 SINE Alu -56 64 5 3 1376 285 381 7 67 chr11 103717778 103717913 -18125943 - MIRc SINE MIR -117 151 25 3 1376 681 224 63 42 chr11 103718054 103718245 -18125611 - B3A SINE B2 -1 197 3 3 1376 807 149 20 41 chr11 103719823 103719970 -18123886 + B1_Mur4 SINE Alu 1 144 -6 3 1376 902 236 23 5 chr11 103721560 103721776 -18122080 - B3A SINE B2 0 216 2 3 1376 455 243 81 0 chr11 103721843 103721856 -18122000 + ID_B1 SINE B4 70 91 -133 3 1376 659 100 146 0 chr11 103721856 103721966 -18121890 + B1_Mus2 SINE Alu 2 127 -20 3 1376 253 321 18 18 chr11 103722133 103722247 -18121609 + L2c LINE L2 3019 3132 -255 3 1376 1288 90 26 31 chr11 103722248 103722443 -18121413 - B2_Mm2 SINE B2 0 195 2 3 1376 755 106 187 0 chr11 103722730 103722853 -18121003 - B1_Mus1 SINE Alu -1 147 2 3 1376 344 149 81 0 chr11 103723680 103723754 -18120102 + PB1D9 SINE Alu 41 120 0 3 1376 331 184 93 7 chr11 103723776 103724078 -18119778 + GA-rich Low_complexity Low_complexity 1 328 0 3 1376 246 288 34 0 chr11 103724078 103724137 -18119719 + G-rich Low_complexity Low_complexity 2 62 0 3 1376 778 96 8 16 chr11 103724138 103724265 -18119591 + (GAGAA)n Simple_repeat Simple_repeat 4 129 0 3 1376 198 0 0 0 chr11 103724266 103724288 -18119568 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 3 1376 255 202 314 9 chr11 103724750 103724855 -18119001 + L1MB3 LINE L1 5216 5352 -788 3 1376 367 284 51 57 chr11 103724979 103725127 -18118729 + PB1D10 SINE Alu 1 146 -3 3 1376 922 293 131 43 chr11 103725177 103725289 -18118567 + L1MB3 LINE L1 5475 5593 -590 3 1376 829 179 7 14 chr11 103725289 103725436 -18118420 + B1_Mus2 SINE Alu 2 147 0 3 1376 922 293 131 43 chr11 103725436 103725933 -18117923 + L1MB3 LINE L1 5594 6138 -45 3 1376 585 0 0 0 chr11 103726707 103726772 -18117084 + (AGGGGG)n Simple_repeat Simple_repeat 4 68 0 3 1376 240 35 0 0 chr11 103727263 103727292 -18116564 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1376 1413 71 16 0 chr11 103727308 103727492 -18116364 - B2_Mm2 SINE B2 -7 188 2 3 1376 920 157 0 13 chr11 103727494 103727643 -18116213 - B1_Mus1 SINE Alu -1 147 1 3 1376 275 240 126 47 chr11 103727535 103727662 -18116194 - RLTR25A LTR ERVK -522 581 445 3 1376 331 208 104 0 chr11 103728228 103728305 -18115551 + PB1D7 SINE Alu 35 119 -1 3 1376 290 257 78 19 chr11 103728417 103728520 -18115336 + L1MA5 LINE L1 6189 6297 -3 3 1376 525 184 35 120 chr11 103728537 103728679 -18115177 + B1F SINE Alu 1 130 -19 3 1376 248 159 23 198 chr11 103728679 103728765 -18115091 + ID_B1 SINE B4 130 200 -24 3 1376 346 83 0 211 chr11 103728693 103728769 -18115087 + B1F SINE Alu 67 126 -23 3 1376 270 236 99 0 chr11 103728764 103728853 -18115003 + B1_Mur4 SINE Alu 44 140 -10 3 1376 21 36 0 0 chr11 103729716 103729744 -18114112 + AT_rich Low_complexity Low_complexity 1 28 0 3 1376 819 204 0 0 chr11 103729748 103729895 -18113961 + B1_Mur4 SINE Alu 2 148 -2 3 1376 363 44 0 0 chr11 103729906 103729951 -18113905 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1376 737 228 25 0 chr11 103729983 103730141 -18113715 - RSINE1 SINE B4 -2 163 2 3 1376 223 195 24 0 chr11 103730359 103730400 -18113456 + B3A SINE B2 2 43 -155 4 1376 300 70 0 0 chr11 103731280 103731323 -18112533 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1376 316 377 23 0 chr11 103731323 103731453 -18112403 - B1F1 SINE Alu -11 138 6 4 1376 727 170 96 7 chr11 103731494 103731630 -18112226 - B1_Mur4 SINE Alu 0 150 3 4 1376 363 44 0 0 chr11 103731665 103731710 -18112146 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1376 250 260 40 50 chr11 103731758 103731859 -18111997 - RSINE1 SINE B4 -62 103 4 4 1376 1163 34 7 40 chr11 103731951 103732103 -18111753 + B1_Mm SINE Alu 1 147 0 4 1376 275 241 8 156 chr11 103732729 103732857 -18110999 + PB1 SINE Alu 1 109 -18 4 1376 315 291 13 0 chr11 103732876 103732955 -18110901 + ID4_ SINE ID 2 81 -2 4 1376 387 0 0 0 chr11 103732983 103733026 -18110830 + (CCA)n Simple_repeat Simple_repeat 3 45 0 4 1376 205 306 139 35 chr11 103733026 103733141 -18110715 + L2c LINE L2 3256 3382 -5 4 1376 200 286 0 0 chr11 103733835 103733884 -18109972 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1376 301 316 104 0 chr11 103734933 103735104 -18108752 - L1MA5 LINE L1 -36 6264 6078 4 1376 25 51 0 0 chr11 103735152 103735191 -18108665 + AT_rich Low_complexity Low_complexity 1 39 0 4 1376 570 316 72 0 chr11 103735319 103735471 -18108385 + RSINE1 SINE B4 3 165 0 4 1376 322 279 154 55 chr11 103735528 103735638 -18108218 + RSINE1 SINE B4 41 161 -4 4 1376 22 0 0 0 chr11 103735638 103735660 -18108196 + AT_rich Low_complexity Low_complexity 1 22 0 4 1376 21 36 0 0 chr11 103735764 103735792 -18108064 + AT_rich Low_complexity Low_complexity 1 28 0 4 1376 360 283 76 0 chr11 103735807 103735899 -18107957 - RSINE1 SINE B4 0 165 67 4 1376 3221 221 59 32 chr11 103736249 103736991 -18106865 + RMER1C Other Other 568 1329 -13 4 1376 28 61 0 0 chr11 103737068 103737117 -18106739 + AT_rich Low_complexity Low_complexity 1 49 0 4 1376 1105 277 145 26 chr11 103737217 103737755 -18106101 - Lx7 LINE L1 -201 7495 6894 4 1376 28 48 0 0 chr11 103737982 103738024 -18105832 + AT_rich Low_complexity Low_complexity 1 42 0 4 1376 483 264 67 87 chr11 103738608 103738765 -18105091 + B4A SINE B4 64 216 -76 4 1376 1436 6 0 6 chr11 103738765 103738924 -18104932 + B2_Mm1a SINE B2 2 160 -33 4 1376 321 26 0 0 chr11 103738924 103738962 -18104894 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1376 27 29 0 0 chr11 103739372 103739406 -18104450 + AT_rich Low_complexity Low_complexity 1 34 0 4 1376 327 143 93 105 chr11 103739670 103739756 -18104100 + PB1D9 SINE Alu 33 117 -3 4 1376 195 42 0 0 chr11 103740455 103740479 -18103377 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1376 1141 57 43 0 chr11 103740479 103740620 -18103236 - B1_Mm SINE Alu 0 147 1 4 1376 341 240 87 0 chr11 103740663 103740767 -18103089 + HAL1b LINE L1 1694 1806 -203 4 1376 309 51 0 0 chr11 103741023 103741062 -18102794 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1376 1254 34 0 7 chr11 103741062 103741210 -18102646 - B1_Mus2 SINE Alu 0 147 1 4 1376 658 253 26 10 chr11 103741827 103742019 -18101837 + Looper DNA PiggyBac 35 229 -1329 4 1376 283 258 152 0 chr11 103742282 103742348 -18101508 - ID4 SINE ID -2 81 6 4 1376 245 175 48 0 chr11 103742378 103742441 -18101415 - L1MEg LINE L1 -4733 1351 1286 4 1376 729 247 63 6 chr11 103742450 103742625 -18101231 - MLT2B4 LTR ERVL -371 185 1 4 1376 934 248 45 0 chr11 103742710 103742912 -18100944 - B3 SINE B2 -5 211 1 4 1376 1183 177 45 36 chr11 103743280 103743483 -18100373 + URR1B DNA MER1_type 1 211 -14 4 1376 2981 48 55 16 chr11 103743483 103743868 -18099988 + MTB LTR MaLR 1 400 0 4 1376 1183 177 45 36 chr11 103743868 103743887 -18099969 + URR1B DNA MER1_type 212 225 0 4 1376 991 152 95 32 chr11 103745765 103745955 -18097901 + B3 SINE B2 15 216 0 4 1376 186 43 0 0 chr11 103745969 103745992 -18097864 + (GGA)n Simple_repeat Simple_repeat 3 25 0 4 1376 247 259 112 56 chr11 103746467 103746610 -18097246 + RMER10A LTR ERVL 75 225 -217 4 1376 904 190 87 40 chr11 103747655 103747907 -18095949 + RLTR15 LTR ERVK 77 340 -19 4 1376 499 197 152 24 chr11 103748459 103748584 -18095272 + B1_Mur3 SINE Alu 1 141 -8 4 1376 517 182 0 22 chr11 103748593 103748683 -18095173 + ORR1A3-int LTR MaLR 876 963 -1000 4 1376 553 201 227 44 chr11 103748660 103748889 -18094967 + RLTR25B LTR ERVK 620 890 -138 4 1376 381 329 139 58 chr11 103749177 103749593 -18094263 - L2 LINE L2 -1871 1548 1099 4 1376 205 182 0 0 chr11 103749653 103749686 -18094170 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1376 1626 52 0 0 chr11 103749707 103749899 -18093957 + B2_Mm1t SINE B2 2 193 0 4 1376 256 0 0 0 chr11 103750354 103750383 -18093473 - ORR1B2 LTR MaLR -338 29 1 4 1376 277 220 0 17 chr11 103750759 103750819 -18093037 + ID_B1 SINE B4 83 141 -83 4 1376 265 250 33 22 chr11 103750760 103750850 -18093006 + PB1D7 SINE Alu 3 93 -27 4 1376 637 254 84 0 chr11 103750847 103750989 -18092867 + RSINE1 SINE B4 12 165 0 4 1376 195 100 0 0 chr11 103751031 103751061 -18092795 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1376 250 250 0 0 chr11 103751070 103751122 -18092734 + B1F SINE Alu 96 147 -2 4 1376 480 245 0 29 chr11 103751275 103751385 -18092471 + B1_Mur2 SINE Alu 17 147 -2 4 1376 309 221 23 11 chr11 103751393 103751480 -18092376 - Charlie18a DNA MER1_type -130 212 125 4 1376 324 123 46 0 chr11 103751512 103751577 -18092279 + Lx9 LINE L1 7576 7643 -1 4 1376 499 197 31 62 chr11 103753598 103753728 -18090128 - B1_Mur2 SINE Alu -8 141 16 4 1376 403 294 84 26 chr11 103753713 103753910 -18089946 - B3A SINE B2 -9 189 1 4 1376 593 183 128 15 chr11 103754555 103754688 -18089168 + B1F SINE Alu 1 148 -1 4 1376 217 371 53 8 chr11 103754739 103754872 -18088984 - MER5A DNA MER1_type -1 188 50 4 1376 199 242 62 31 chr11 103755066 103755130 -18088726 + L3 LINE CR1 3842 3907 -582 4 1376 260 207 35 0 chr11 103755646 103755704 -18088152 - MTE2b LTR MaLR -25 354 295 4 1376 806 217 56 51 chr11 103755746 103755960 -18087896 - B3 SINE B2 0 216 2 4 1376 824 294 35 39 chr11 103755961 103756191 -18087665 - B4A SINE B4 -63 229 1 4 1376 1052 109 234 5 chr11 103757153 103757337 -18086519 + URR1A DNA MER1_type 1 226 0 4 1376 180 111 0 0 chr11 103757765 103757792 -18086064 + (TGG)n Simple_repeat Simple_repeat 3 29 0 4 1376 1423 84 21 0 chr11 103759012 103759202 -18084654 + B2_Mm2 SINE B2 2 195 0 4 1376 398 318 27 9 chr11 103760171 103760282 -18083574 - RSINE1 SINE B4 -1 164 52 4 1376 26 50 0 0 chr11 103761169 103761209 -18082647 + AT_rich Low_complexity Low_complexity 1 40 0 4 1376 223 340 111 82 chr11 103762118 103762505 -18081351 - L2c LINE L2 -225 3162 2756 4 1376 351 0 0 0 chr11 103762957 103762996 -18080860 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1376 409 188 9 103 chr11 103763706 103763813 -18080043 + MT2B LTR ERVL 160 256 -345 4 1376 968 134 0 0 chr11 103763717 103763859 -18079997 + B1_Mur4 SINE Alu 9 150 0 4 1376 1140 130 0 17 chr11 103763863 103764043 -18079813 + B2_Mm2 SINE B2 1 177 -18 4 1376 280 324 124 21 chr11 103764172 103764317 -18079539 + MER20 DNA MER1_type 57 216 -3 4 1376 687 131 205 0 chr11 103764369 103764491 -18079365 + B1_Mus2 SINE Alu 1 147 0 4 1376 257 229 0 0 chr11 103764491 103764561 -18079295 + A-rich Low_complexity Low_complexity 1 70 0 4 1376 524 290 25 84 chr11 103765353 103765556 -18078300 + MIR SINE MIR 50 240 -22 4 1376 829 158 7 33 chr11 103766139 103766290 -18077566 + B1_Mur3 SINE Alu 2 148 -1 4 1376 795 147 103 0 chr11 103766423 103766559 -18077297 - B1_Mur4 SINE Alu 0 150 1 4 1376 242 159 188 16 chr11 103766693 103766757 -18077099 - ID4_ SINE ID -1 82 8 4 1376 460 196 51 43 chr11 103767002 103767119 -18076737 + B1F1 SINE Alu 6 123 -26 4 1376 225 250 16 16 chr11 103767122 103767183 -18076673 + GA-rich Low_complexity Low_complexity 4 64 0 4 1376 234 0 0 0 chr11 103768863 103768889 -18074967 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1376 666 51 14 49 chr11 103768889 103769033 -18074823 + (TTG)n Simple_repeat Simple_repeat 2 140 0 4 1376 860 86 0 66 chr11 103769036 103769173 -18074683 - B1_Mur3 SINE Alu -21 128 1 4 1376 23 0 0 0 chr11 103770596 103770619 -18073237 + AT_rich Low_complexity Low_complexity 1 23 0 4 1376 189 107 0 0 chr11 103770723 103770751 -18073105 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1376 37 0 0 0 chr11 103772604 103772641 -18071215 + AT_rich Low_complexity Low_complexity 1 37 0 4 1376 421 294 123 0 chr11 103773038 103773184 -18070672 + RSINE1 SINE B4 2 165 0 4 1376 21 57 0 0 chr11 103773195 103773230 -18070626 + AT_rich Low_complexity Low_complexity 1 35 0 4 1376 220 325 24 24 chr11 103773270 103773350 -18070506 + B1_Mur2 SINE Alu 4 83 -66 4 1376 561 227 92 55 chr11 103773350 103773561 -18070295 + B3 SINE B2 2 195 0 4 1376 290 313 88 29 chr11 103773883 103774123 -18069733 + L1MC4a LINE L1 7545 7798 -84 4 1376 1198 68 0 0 chr11 103774166 103774313 -18069543 - B1_Mus1 SINE Alu 0 148 2 4 1376 319 213 11 15 chr11 103775457 103775557 -18068299 + B1_Mur4 SINE Alu 1 99 -21 4 1376 183 261 43 14 chr11 103775561 103775631 -18068225 - L2a LINE L2 -12 3414 3343 4 1376 265 225 0 33 chr11 103775844 103775936 -18067920 + (TTTG)n Simple_repeat Simple_repeat 2 90 0 5 1376 776 160 0 0 chr11 103775937 103776056 -18067800 - PB1D9 SINE Alu 0 120 2 5 1376 311 279 332 34 chr11 103776328 103776597 -18067259 - Charlie1 DNA MER1_type -10 2771 2423 5 1376 810 250 23 56 chr11 103776606 103776822 -18067034 - ID_B1 SINE B4 0 224 16 5 1376 1013 209 22 35 chr11 103777065 103777293 -18066563 - B4A SINE B4 -67 225 1 5 1376 518 248 126 36 chr11 103777471 103777638 -18066218 - B3A SINE B2 -16 182 1 5 1376 210 71 0 0 chr11 103778185 103778213 -18065643 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1376 1051 90 14 0 chr11 103779452 103779597 -18064259 + B1_Mus1 SINE Alu 2 148 0 5 1376 900 179 75 6 chr11 103779619 103779793 -18064063 + B3 SINE B2 27 212 -4 5 1376 589 274 83 0 chr11 103780033 103780201 -18063655 + B3A SINE B2 1 182 -16 5 1376 232 296 0 18 chr11 103780305 103780360 -18063496 + RSINE1 SINE B4 23 76 -89 5 1376 642 349 14 5 chr11 103780384 103780597 -18063259 + Lx8 LINE L1 7099 7313 -160 5 1376 387 41 0 0 chr11 103780780 103780829 -18063027 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1376 645 243 28 0 chr11 103780829 103780973 -18062883 - B3A SINE B2 -50 148 1 5 1376 26 0 0 0 chr11 103782235 103782261 -18061595 + AT_rich Low_complexity Low_complexity 1 26 0 5 1376 317 152 0 4 chr11 103782296 103782359 -18061497 + B3 SINE B2 5 65 -130 5 1376 1789 218 14 8 chr11 103782915 103783285 -18060571 - ORR1D1 LTR MaLR -2 372 1 5 1376 521 250 120 63 chr11 103783336 103783511 -18060345 + B3 SINE B2 2 186 -30 5 1376 189 0 0 0 chr11 103783513 103783534 -18060322 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1376 609 231 34 40 chr11 103784566 103784715 -18059141 + B1_Mur1 SINE Alu 1 148 -1 5 1376 1282 88 12 0 chr11 103784792 103784963 -18058893 + B2_Mm1t SINE B2 2 174 -19 5 1376 925 207 60 5 chr11 103785057 103785256 -18058600 - B3 SINE B2 -5 211 2 5 1376 228 294 65 60 chr11 103785295 103785494 -18058362 + L1MC4 LINE L1 508 707 -5508 5 1376 23 0 0 0 chr11 103785640 103785663 -18058193 + AT_rich Low_complexity Low_complexity 1 23 0 5 1376 200 265 0 0 chr11 103785692 103785741 -18058115 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1376 402 294 89 79 chr11 103785798 103786001 -18057855 - B4A SINE B4 -86 206 2 5 1376 1272 198 191 9 chr11 103786076 103786428 -18057428 + MTD LTR MaLR 1 405 -14 5 1376 1047 65 65 7 chr11 103786590 103786729 -18057127 + B1_Mus2 SINE Alu 1 147 0 5 1376 1154 62 7 7 chr11 103786801 103786947 -18056909 - B1_Mus2 SINE Alu 0 147 2 5 1376 1689 21 0 0 chr11 103786950 103787138 -18056718 - B2_Mm1a SINE B2 -4 189 2 5 1376 24 32 0 0 chr11 103787141 103787172 -18056684 + AT_rich Low_complexity Low_complexity 1 31 0 5 1376 305 113 19 0 chr11 103788667 103788720 -18055136 - B1_Mur1 SINE Alu 0 149 96 5 1376 21 0 0 0 chr11 103789080 103789101 -18054755 + AT_rich Low_complexity Low_complexity 1 21 0 5 1376 4505 12 2 0 chr11 103789208 103789700 -18054156 + MT2_Mm LTR ERVL 1 493 0 5 1376 370 287 167 0 chr11 103789753 103789861 -18053995 + RSINE1 SINE B4 3 128 -37 5 1376 28 0 0 26 chr11 103790635 103790646 -18053210 + AT_rich Low_complexity Low_complexity 1 11 0 5 1376 196 53 53 0 chr11 103790646 103790684 -18053172 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 5 1376 28 0 0 26 chr11 103790684 103790711 -18053145 + AT_rich Low_complexity Low_complexity 1 27 0 5 1376 1266 44 0 0 chr11 103790711 103790871 -18052985 - B2_Mm1a SINE B2 -33 160 1 5 1376 224 305 284 7 chr11 103791603 103791758 -18052098 - MIR SINE MIR -34 228 31 5 1376 302 256 0 13 chr11 103792732 103792811 -18051045 + PB1D7 SINE Alu 43 120 0 5 1376 748 216 76 0 chr11 103792943 103793128 -18050728 - ID_B1 SINE B4 -25 199 1 5 1376 23 0 0 0 chr11 103793327 103793350 -18050506 + AT_rich Low_complexity Low_complexity 1 23 0 5 1376 257 274 126 10 chr11 103793354 103793457 -18050399 - PB1D10 SINE Alu 0 120 6 5 1376 183 80 0 0 chr11 103793514 103793539 -18050317 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1376 1600 17 0 0 chr11 103793580 103793754 -18050102 - B2_Mm1a SINE B2 -18 175 2 5 1376 906 150 7 20 chr11 103793757 103793907 -18049949 - B1_Mur3 SINE Alu -1 148 1 5 1376 243 0 0 0 chr11 103793971 103793998 -18049858 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1376 556 253 49 24 chr11 103794352 103794545 -18049311 - B3A SINE B2 -7 191 7 5 1376 384 77 0 0 chr11 103794582 103794634 -18049222 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1376 347 269 65 29 chr11 103794682 103794820 -18049036 + B1F SINE Alu 6 148 -1 5 1376 404 190 129 10 chr11 103794904 103795005 -18048851 + RSINE1 SINE B4 15 127 -38 5 1376 414 0 0 0 chr11 103795045 103795091 -18048765 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1376 620 292 138 28 chr11 103795095 103795451 -18048405 + Charlie7 DNA MER1_type 1924 2318 -294 5 1376 1438 79 11 0 chr11 103796342 103796532 -18047324 - B2_Mm1t SINE B2 -1 192 1 5 1376 252 286 20 10 chr11 103796565 103796664 -18047192 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 5 1376 498 231 15 15 chr11 103797523 103797655 -18046201 + ID_B1 SINE B4 90 221 -3 5 1376 258 148 16 115 chr11 103797961 103798022 -18045834 + B1F SINE Alu 5 59 -90 5 1376 931 52 7 49 chr11 103798317 103798459 -18045397 + B1_Mus1 SINE Alu 13 148 0 5 1376 220 47 70 0 chr11 103798498 103798515 -18045341 + (TTGG)n Simple_repeat Simple_repeat 3 19 0 5 1376 198 0 0 0 chr11 103798515 103798537 -18045319 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1376 220 47 70 0 chr11 103798537 103798562 -18045294 + (TTGG)n Simple_repeat Simple_repeat 3 30 0 5 1376 648 212 21 22 chr11 103798576 103798724 -18045132 - ID_B1 SINE B4 0 224 82 5 1376 419 221 141 8 chr11 103798742 103798870 -18044986 + RSINE1 SINE B4 4 148 -17 5 1376 577 246 92 53 chr11 103799227 103799454 -18044402 + L1M5 LINE L1 5583 5818 -361 5 1376 312 286 50 81 chr11 103799977 103800137 -18043719 - L1MA5 LINE L1 -380 5920 5766 5 1376 276 30 0 0 chr11 103800137 103800170 -18043686 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1376 1158 61 0 7 chr11 103800170 103800318 -18043538 - B1_Mm SINE Alu 0 147 1 5 1376 1421 76 38 0 chr11 103800321 103800506 -18043350 - B2_Mm2 SINE B2 -3 192 1 5 1376 237 225 86 12 chr11 103800510 103800591 -18043265 - L1M4 LINE L1 -396 5782 5696 5 1376 316 283 17 34 chr11 103800649 103800766 -18043090 - PB1D10 SINE Alu -2 115 1 5 1376 563 230 97 6 chr11 103800807 103800982 -18042874 - L1M4 LINE L1 -885 5261 5071 5 1376 356 271 42 21 chr11 103801049 103801192 -18042664 - L1M4 LINE L1 -1737 4409 4264 5 1376 382 205 0 46 chr11 103801253 103801340 -18042516 + ID4 SINE ID 1 83 0 5 1376 508 230 57 32 chr11 103801494 103801651 -18042205 - L1M4 LINE L1 -1973 4173 4013 5 1376 231 61 0 0 chr11 103802037 103802070 -18041786 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1376 762 116 54 61 chr11 103802545 103802692 -18041164 + B1_Mur4 SINE Alu 5 150 0 5 1376 290 304 51 66 chr11 103802959 103803156 -18040700 - L1M5 LINE L1 -785 5361 5168 5 1376 208 136 0 64 chr11 103803328 103803375 -18040481 + CT-rich Low_complexity Low_complexity 1 44 0 5 1376 424 290 6 1 chr11 103803409 103803531 -18040325 + MLT1B LTR MaLR 241 382 -8 5 1376 1521 53 16 0 chr11 103804541 103804728 -18039128 + B2_Mm2 SINE B2 1 190 -5 5 1376 662 194 8 15 chr11 103805286 103805417 -18038439 + B1_Mur1 SINE Alu 1 130 -19 5 1376 470 70 14 0 chr11 103805423 103805494 -18038362 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 5 1376 261 163 0 0 chr11 103805501 103805550 -18038306 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 5 1376 602 214 0 41 chr11 103805644 103805766 -18038090 - PB1D10 SINE Alu 0 117 1 5 1376 23 78 0 0 chr11 103805813 103805864 -18037992 + AT_rich Low_complexity Low_complexity 1 51 0 5 1376 384 187 0 0 chr11 103805907 103806030 -18037826 + (TA)n Simple_repeat Simple_repeat 1 123 0 5 1376 341 212 162 0 chr11 103806213 103806312 -18037544 - PB1D7 SINE Alu -5 115 1 5 1376 25 31 0 0 chr11 103806477 103806509 -18037347 + AT_rich Low_complexity Low_complexity 1 32 0 5 1376 231 61 0 0 chr11 103806581 103806614 -18037242 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1376 236 284 120 7 chr11 103806667 103806809 -18037047 + Lx6 LINE L1 7270 7427 -33 5 1376 343 162 24 98 chr11 103806809 103806891 -18036965 + B1_Mus1 SINE Alu 37 112 -36 5 1376 204 40 0 0 chr11 103806933 103806958 -18036898 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 5 1376 517 149 0 116 chr11 103807031 103807152 -18036704 - B1_Mur1 SINE Alu 0 149 43 5 1376 518 221 0 59 chr11 103807178 103807313 -18036543 - RSINE1 SINE B4 -36 129 3 5 1376 336 24 0 0 chr11 103807383 103807424 -18036432 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1376 874 234 26 10 chr11 103807935 103808129 -18035727 - B3A SINE B2 0 198 2 5 1376 236 315 45 0 chr11 103808456 103808545 -18035311 - MER5A DNA MER1_type -96 93 1 5 1376 990 156 102 5 chr11 103808562 103808749 -18035107 + B3 SINE B2 5 209 -7 5 21 1419 238 3 31 chr11 103808771 103809092 -18034764 + Lx7 LINE L1 7055 7366 -330 5 1377 234 0 0 0 chr11 103809106 103809132 -18034724 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1377 441 0 0 0 chr11 103809181 103809230 -18034626 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 5 1377 1105 50 0 7 chr11 103809232 103809374 -18034482 - B1_Mus1 SINE Alu -6 142 2 5 1377 411 226 85 0 chr11 103809411 103809517 -18034339 + Lx7 LINE L1 7559 7673 -23 5 1377 273 29 0 0 chr11 103809524 103809558 -18034298 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1377 21 0 0 0 chr11 103809669 103809690 -18034166 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 22 0 0 0 chr11 103810003 103810025 -18033831 + AT_rich Low_complexity Low_complexity 1 22 0 6 1377 323 245 55 73 chr11 103810623 103810733 -18033123 + RSINE1 SINE B4 58 165 0 6 1377 1587 37 16 0 chr11 103811145 103811335 -18032521 + B2_Mm2 SINE B2 2 194 -1 6 1377 503 206 64 35 chr11 103811622 103811763 -18032093 + B1_Mur4 SINE Alu 5 149 -1 6 1377 387 288 71 14 chr11 103811877 103812018 -18031838 + RSINE1 SINE B4 3 151 -14 6 1377 712 213 0 0 chr11 103812291 103812427 -18031429 - B1F2 SINE Alu -7 142 7 6 1377 359 282 165 36 chr11 103813152 103813376 -18030480 + B4 SINE B4 24 276 -16 6 1377 495 180 40 0 chr11 103813571 103813671 -18030185 - B1_Mur2 SINE Alu 0 149 46 6 1377 226 304 29 0 chr11 103813928 103814030 -18029826 - L2 LINE L2 -1293 2126 2022 6 1377 32 91 0 0 chr11 103815343 103815431 -18028425 + GC_rich Low_complexity Low_complexity 1 88 0 6 1377 1670 36 0 0 chr11 103816859 103817052 -18026804 + B2_Mm1a SINE B2 1 193 0 6 1377 228 35 0 0 chr11 103817071 103817100 -18026756 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 6 1377 570 226 8 31 chr11 103817128 103817256 -18026600 - B3 SINE B2 -90 126 2 6 1377 480 228 135 96 chr11 103817343 103817624 -18026232 - B4A SINE B4 0 292 1 6 1377 613 225 48 127 chr11 103817793 103818164 -18025692 - RMER10A LTR ERVL -14 428 87 6 1377 660 194 39 0 chr11 103818306 103818435 -18025421 + B1_Mur3 SINE Alu 3 136 -13 6 1377 408 88 0 0 chr11 103818684 103818741 -18025115 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 6 1377 225 75 37 19 chr11 103818894 103818948 -18024908 + (TTTTG)n Simple_repeat Simple_repeat 4 58 0 6 1377 1122 49 35 0 chr11 103818954 103819096 -18024760 - B1_Mus2 SINE Alu 0 147 1 6 1377 1000 220 57 48 chr11 103819119 103819474 -18024382 + RMER16 LTR ERVK 1 533 0 6 1377 285 98 0 0 chr11 103820191 103820232 -18023624 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1377 1631 213 57 29 chr11 103820348 103820734 -18023122 - MTD LTR MaLR -20 399 3 6 1377 1340 96 21 0 chr11 103820777 103820965 -18022891 + B2_Mm1a SINE B2 2 193 0 6 1377 599 264 12 6 chr11 103821057 103821221 -18022635 + MLT2D LTR ERVL 35 199 -215 6 1377 658 252 7 0 chr11 103821323 103821470 -18022386 + B1_Mur1 SINE Alu 2 149 0 6 1377 250 292 114 78 chr11 103821501 103821668 -18022188 + MLT2D LTR ERVL 378 550 -10 6 1377 1552 48 16 0 chr11 103822032 103822220 -18021636 - B2_Mm2 SINE B2 0 195 5 6 1377 1221 225 12 81 chr11 103823354 103823544 -18020312 - MTEa LTR MaLR -45 334 164 6 1377 1772 146 126 87 chr11 103823544 103823851 -18020005 - MTC LTR MaLR -1 420 97 6 1377 1515 48 11 0 chr11 103823851 103824040 -18019816 - B2_Mm1t SINE B2 -1 192 2 6 1377 1772 146 126 87 chr11 103824040 103824136 -18019720 - MTC LTR MaLR -325 96 1 6 1377 1221 225 12 81 chr11 103824136 103824289 -18019567 - MTEa LTR MaLR -216 163 15 6 1377 635 66 73 0 chr11 103824317 103824453 -18019403 + (TC)n Simple_repeat Simple_repeat 1 146 0 6 1377 302 211 0 53 chr11 103824454 103824529 -18019327 - ID4 SINE ID -11 72 2 6 1377 1025 134 37 16 chr11 103824673 103824863 -18018993 - B2_Mm2 SINE B2 0 195 2 6 1377 372 43 0 0 chr11 103824948 103824994 -18018862 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 6 1377 657 38 0 0 chr11 103824994 103825073 -18018783 + (TC)n Simple_repeat Simple_repeat 2 81 0 6 1377 227 303 53 0 chr11 103825079 103825155 -18018701 - ID4_ SINE ID -2 81 2 6 1377 456 250 30 41 chr11 103825500 103825659 -18018197 - MTD LTR MaLR -14 405 224 6 1377 273 248 2 18 chr11 103825764 103825839 -18018017 + MTEb LTR MaLR 294 396 -12 6 1377 483 48 0 0 chr11 103825843 103825905 -18017951 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1377 441 0 0 0 chr11 103825905 103825954 -18017902 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1377 430 226 5 3 chr11 103825967 103826073 -18017783 + ID4 SINE ID 6 112 -40 6 1377 1456 54 27 5 chr11 103826129 103826156 -18017700 - B2_Mm1t SINE B2 -1 192 161 6 1377 207 0 0 0 chr11 103826156 103826179 -18017677 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1377 1456 54 27 5 chr11 103826179 103826338 -18017518 - B2_Mm1t SINE B2 -33 160 2 6 1377 799 246 15 44 chr11 103826358 103826562 -18017294 - B3A SINE B2 0 198 1 6 1377 665 286 92 34 chr11 103826587 103826880 -18016976 - L1MC1 LINE L1 -15 6318 6009 6 1377 315 191 170 0 chr11 103826924 103827018 -18016838 - L1MC1 LINE L1 -422 5911 5802 6 1377 213 234 25 49 chr11 103827045 103827126 -18016730 - ID4 SINE ID -4 79 1 6 1377 1531 53 5 0 chr11 103827174 103827361 -18016495 - B2_Mm1a SINE B2 -4 189 2 6 1377 1539 33 33 0 chr11 103829423 103829607 -18014249 + B2_Mm1a SINE B2 2 191 -2 6 1377 213 237 0 0 chr11 103830294 103830353 -18013503 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1377 731 286 97 8 chr11 103830639 103830907 -18012949 - B4A SINE B4 0 292 1 6 1377 290 277 36 0 chr11 103831012 103831095 -18012761 - PB1D7 SINE Alu 0 120 35 6 1377 226 276 79 0 chr11 103832083 103832159 -18011697 + L2a LINE L2 3341 3422 -4 6 1377 385 342 33 0 chr11 103832170 103832290 -18011566 + MLT1H2 LTR MaLR 2 125 -364 6 1377 672 238 59 108 chr11 103832604 103832680 -18011176 - B4 SINE B4 0 292 220 6 1377 237 65 0 0 chr11 103832680 103832711 -18011145 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1377 672 238 59 108 chr11 103832711 103832940 -18010916 - B4 SINE B4 -73 219 2 6 1377 334 321 111 7 chr11 103832959 103833094 -18010762 - B1F1 SINE Alu 0 149 1 6 1377 984 191 80 10 chr11 103833153 103833354 -18010502 - B3 SINE B2 0 216 2 6 1377 360 328 55 23 chr11 103833622 103833750 -18010106 - B1F1 SINE Alu -15 134 3 6 1377 443 294 37 6 chr11 103833750 103833797 -18010059 - ID SINE ID -137 87 41 6 1377 243 301 83 39 chr11 103833850 103834030 -18009826 - L2 LINE L2 -1724 1695 1508 6 1377 624 300 77 30 chr11 103835223 103835454 -18008402 - ID_B1 SINE B4 -33 259 12 6 1377 326 255 56 84 chr11 103835640 103835747 -18008109 - B1F2 SINE Alu 0 149 46 6 1377 1982 110 27 75 chr11 103835751 103836086 -18007770 - ORR1A2 LTR MaLR -8 319 1 6 1377 298 200 5 0 chr11 103836086 103836147 -18007709 - B4A SINE B4 -157 135 69 6 1377 391 295 114 0 chr11 103836166 103836271 -18007585 - ID_B1 SINE B4 -20 204 88 6 1377 266 87 0 21 chr11 103836293 103836340 -18007516 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 6 1377 210 238 0 0 chr11 103836407 103836449 -18007407 - B4A SINE B4 -169 123 82 6 1377 308 262 59 4 chr11 103836466 103836571 -18007285 - B1F2 SINE Alu -2 115 2 6 1377 237 227 45 0 chr11 103836685 103836729 -18007127 + ID4_ SINE ID 29 74 -9 6 1377 1435 71 16 5 chr11 103836866 103837051 -18006805 - B2_Mm2 SINE B2 -7 188 2 6 1377 243 0 0 0 chr11 103837080 103837107 -18006749 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1377 1414 102 0 5 chr11 103837114 103837310 -18006546 + B2_Mm2 SINE B2 1 195 0 6 1377 304 329 43 37 chr11 103837342 103837427 -18006429 - ID_B1 SINE B4 -47 177 16 6 1377 367 174 31 15 chr11 103837427 103837503 -18006353 - ID4_ SINE ID -59 93 16 6 1377 1590 52 0 5 chr11 103837525 103837720 -18006136 - B2_Mm2 SINE B2 0 195 2 6 1377 245 289 106 13 chr11 103837727 103837878 -18005978 - L1MB3 LINE L1 -47 6136 5972 6 1377 227 300 38 0 chr11 103838071 103838151 -18005705 - ID4_ SINE ID 0 83 1 6 1377 293 278 105 13 chr11 103838439 103838592 -18005264 + MIRb SINE MIR 87 253 -15 6 1377 356 301 80 33 chr11 103838966 103839117 -18004739 + ID_B1 SINE B4 65 222 -2 6 1377 895 149 7 15 chr11 103839337 103839473 -18004383 - B1_Mus1 SINE Alu -9 139 5 6 1377 256 171 45 23 chr11 103839620 103839752 -18004104 + (TATAA)n Simple_repeat Simple_repeat 3 137 0 6 1377 186 315 19 0 chr11 103839778 103839832 -18004024 - MIRm SINE MIR -195 81 27 6 1377 1016 130 7 20 chr11 103840017 103840166 -18003690 - B1_Mur3 SINE Alu -2 147 1 6 1377 939 152 14 25 chr11 103840175 103840375 -18003481 - B3 SINE B2 -1 194 1 6 1377 21 0 0 0 chr11 103840392 103840413 -18003443 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 223 233 68 14 chr11 103841087 103841161 -18002695 - L3 LINE CR1 -305 4184 4107 6 1377 229 342 77 39 chr11 103841732 103841887 -18001969 - MER21B LTR ERV1 -260 603 443 6 1377 363 329 93 57 chr11 103841779 103842166 -18001690 - MER77 LTR ERVL -20 587 187 6 1377 312 347 52 5 chr11 103842354 103842545 -18001311 + LTR16E2 LTR ERVL 351 550 -18 6 1377 438 242 0 95 chr11 103842789 103842894 -18000962 - PB1D10 SINE Alu -12 105 11 6 1377 505 282 117 19 chr11 103843257 103843463 -18000393 - L2a LINE L2 -7 3419 3194 6 1377 662 271 126 9 chr11 103844595 103844818 -17999038 - L2a LINE L2 -638 2781 2533 6 1377 229 243 170 33 chr11 103847264 103847417 -17996439 - L1MB8 LINE L1 -58 6120 5947 6 1377 892 192 52 81 chr11 103848005 103848215 -17995641 - B3 SINE B2 -10 206 3 6 1377 946 228 87 0 chr11 103848250 103848434 -17995422 + B3 SINE B2 2 201 -15 6 1377 1407 66 11 11 chr11 103848434 103848619 -17995237 - B2_Mm1a SINE B2 -8 185 1 6 1377 24 0 0 0 chr11 103848626 103848650 -17995206 + AT_rich Low_complexity Low_complexity 1 24 0 6 1377 431 35 18 0 chr11 103849259 103849316 -17994540 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1377 241 278 122 77 chr11 103849316 103849472 -17994384 + RSINE1 SINE B4 3 165 0 6 1377 227 289 6 62 chr11 103850116 103850202 -17993654 + MIRb SINE MIR 28 112 -150 6 1377 23 0 0 0 chr11 103850227 103850250 -17993606 + GC_rich Low_complexity Low_complexity 1 23 0 7 1377 307 205 57 57 chr11 103850525 103850613 -17993243 - PB1D10 SINE Alu -9 108 21 7 1377 219 226 339 28 chr11 103850613 103850627 -17993229 - ID_B1 SINE B4 -2 182 80 7 1377 703 286 5 20 chr11 103850880 103851080 -17992776 + B3A SINE B2 2 198 0 7 1377 320 242 0 15 chr11 103852061 103852128 -17991728 - PB1D10 SINE Alu -23 94 29 7 1377 803 286 28 5 chr11 103852130 103852348 -17991508 - ID_B1 SINE B4 0 224 2 7 1377 1163 87 92 6 chr11 103852552 103852725 -17991131 - B2_Mm2 SINE B2 -7 188 1 7 1377 215 265 116 35 chr11 103853093 103853144 -17990712 - L3 LINE CR1 -1074 3415 3364 7 1377 577 276 52 13 chr11 103853144 103853298 -17990558 + RSINE1 SINE B4 2 161 -4 7 1377 215 265 116 35 chr11 103853298 103853332 -17990524 - L3 LINE CR1 -1126 3363 3323 7 1377 514 168 10 68 chr11 103853360 103853521 -17990335 + B3 SINE B2 1 216 0 7 1377 637 240 96 13 chr11 103853534 103853715 -17990141 + B3 SINE B2 1 181 -14 7 1377 245 280 93 0 chr11 103853886 103853961 -17989895 + ID4_ SINE ID 2 83 0 7 1377 188 146 0 47 chr11 103854217 103854260 -17989596 + C-rich Low_complexity Low_complexity 2 42 0 7 1377 477 276 0 0 chr11 103854263 103854379 -17989477 - PB1D10 SINE Alu 0 117 2 7 1377 404 296 82 0 chr11 103854411 103854509 -17989347 + PB1D10 SINE Alu 3 108 -9 7 1377 1244 269 81 40 chr11 103855369 103855841 -17988015 + Lx5 LINE L1 6542 7032 -18 7 1377 267 294 187 74 chr11 103855972 103856229 -17987627 - LTR48B LTR ERV1 0 787 368 7 1377 720 250 40 0 chr11 103856284 103856436 -17987420 - B4A SINE B4 -2 290 133 7 1377 327 164 33 0 chr11 103856461 103856522 -17987334 - B4A SINE B4 -223 69 7 7 1377 389 335 152 5 chr11 103856531 103856729 -17987127 - LTR48B LTR ERV1 -290 354 128 7 1377 1437 257 42 42 chr11 103857378 103857544 -17986312 + MTD LTR MaLR 10 173 -246 7 1377 438 285 112 56 chr11 103857544 103857741 -17986115 + B3 SINE B2 3 210 -6 7 1377 1437 257 42 42 chr11 103857741 103857984 -17985872 + MTD LTR MaLR 174 418 -1 7 1377 210 71 0 0 chr11 103858096 103858124 -17985732 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1377 233 303 0 15 chr11 103858697 103858764 -17985092 + MIRc SINE MIR 127 192 -76 7 1377 703 261 6 31 chr11 103859395 103859557 -17984299 + RSINE1 SINE B4 3 160 -5 7 1377 392 77 51 0 chr11 103859557 103859635 -17984221 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 7 1377 509 127 52 0 chr11 103859664 103859798 -17984058 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 7 1377 537 274 66 7 chr11 103860345 103860481 -17983375 + B1F1 SINE Alu 1 144 -5 7 1377 186 118 0 0 chr11 103860485 103860519 -17983337 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 7 1377 1295 27 0 0 chr11 103861337 103861483 -17982373 - B1_Mus2 SINE Alu 0 147 2 7 1377 3203 53 7 17 chr11 103861666 103862070 -17981786 + MTB LTR MaLR 1 400 0 7 1377 438 280 130 72 chr11 103862645 103862868 -17980988 - B4 SINE B4 -53 239 4 7 1377 364 238 30 0 chr11 103863338 103863439 -17980417 + L1MA5 LINE L1 6050 6153 -147 7 1377 531 252 50 16 chr11 103863468 103863589 -17980267 - ID_B1 SINE B4 -1 223 99 7 1377 307 311 21 148 chr11 103863777 103863966 -17979890 - HAL1 LINE L1 -2333 174 10 7 1377 451 264 153 13 chr11 103864042 103864342 -17979514 - L1MA6 LINE L1 -18 6282 5941 7 1377 269 250 75 0 chr11 103864343 103864423 -17979433 - B4A SINE B4 -6 286 201 7 1377 576 247 5 32 chr11 103864917 103865105 -17978751 - L1MA6 LINE L1 -692 5608 5426 7 1377 464 219 138 0 chr11 103865230 103865350 -17978506 - PB1D9 SINE Alu 0 147 7 7 1377 548 305 25 70 chr11 103865357 103865558 -17978298 - B3A SINE B2 -5 193 2 7 1377 726 264 49 15 chr11 103865593 103865797 -17978059 + B3 SINE B2 6 216 0 7 1377 1215 189 5 0 chr11 103865814 103866015 -17977841 + B3 SINE B2 5 206 -10 7 1377 1267 41 0 0 chr11 103866045 103866191 -17977665 + B1_Mus2 SINE Alu 2 147 0 7 1377 297 167 0 0 chr11 103866192 103866246 -17977610 + A-rich Low_complexity Low_complexity 1 54 0 7 1377 279 308 103 0 chr11 103866583 103866690 -17977166 + B1F SINE Alu 32 149 0 7 1377 1221 229 96 0 chr11 103866704 103867006 -17976850 - ORR1E LTR MaLR -28 331 1 7 1377 914 276 55 16 chr11 103867364 103867618 -17976238 - B4 SINE B4 -14 278 15 7 1377 248 250 35 12 chr11 103869162 103869247 -17974609 + RMER12B LTR ERVK 1105 1191 -213 7 1377 252 0 0 0 chr11 103869389 103869417 -17974439 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1377 530 271 112 68 chr11 103869867 103870073 -17973783 + ID_B1 SINE B4 3 217 -7 7 1377 261 0 0 0 chr11 103870810 103870839 -17973017 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7 1377 589 291 8 0 chr11 103870842 103870969 -17972887 - ID_B1 SINE B4 -15 209 82 7 1377 492 250 266 28 chr11 103871086 103871263 -17972593 - ID_B1 SINE B4 0 224 6 7 1377 3098 189 23 38 chr11 103871553 103872158 -17971698 - RMER20B LTR ERVK -22 605 10 7 1377 222 268 18 0 chr11 103873314 103873370 -17970486 + C-rich Low_complexity Low_complexity 1 57 0 7 1377 216 306 42 0 chr11 103873370 103873442 -17970414 - ID4_ SINE ID -6 77 3 7 1377 254 292 14 14 chr11 103873521 103873594 -17970262 + ID4_ SINE ID 1 73 -10 7 1377 333 0 0 0 chr11 103873616 103873653 -17970203 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1377 369 86 0 0 chr11 103873901 103873959 -17969897 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1377 207 0 0 0 chr11 103874260 103874283 -17969573 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 7 1377 328 309 146 22 chr11 103874776 103874961 -17968895 - LTR16A LTR ERVL -94 357 150 7 1377 698 122 182 24 chr11 103875291 103875417 -17968439 - B1_Mus2 SINE Alu -1 146 1 7 1377 24 0 0 0 chr11 103875427 103875451 -17968405 + AT_rich Low_complexity Low_complexity 1 24 0 7 1377 450 320 36 89 chr11 103875454 103875622 -17968234 - RSINE1 SINE B4 -4 161 3 7 1377 357 24 0 0 chr11 103875884 103875926 -17967930 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 7 1377 263 254 8 0 chr11 103875969 103876091 -17967765 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 7 1377 311 289 0 28 chr11 103876098 103876205 -17967651 + (CCCA)n Simple_repeat Simple_repeat 2 105 0 7 1377 279 291 8 5 chr11 103876210 103876295 -17967561 - L2a LINE L2 -19 3407 3271 7 1377 317 263 47 71 chr11 103876347 103876406 -17967450 - MER58A DNA MER1_type -20 204 142 7 1377 3234 43 12 15 chr11 103876406 103876807 -17967049 - MTB LTR MaLR 0 400 1 7 1377 317 263 47 71 chr11 103876807 103876874 -17966982 - MER58A DNA MER1_type -83 141 81 7 1377 186 43 0 0 chr11 103876950 103876973 -17966883 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 7 1377 445 339 70 6 chr11 103876981 103877153 -17966703 + MIRb SINE MIR 85 267 -1 7 1377 270 0 0 0 chr11 103877316 103877346 -17966510 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1377 665 122 0 9 chr11 103877588 103877704 -17966152 + (TG)n Simple_repeat Simple_repeat 1 115 0 7 1377 1028 260 14 59 chr11 103877743 103878029 -17965827 - B4A SINE B4 -19 273 1 7 1377 619 228 65 65 chr11 103879640 103879856 -17964000 + RLTR9A LTR ERVK 153 368 0 7 1377 383 167 40 30 chr11 103880204 103880303 -17963553 + RLTR9D LTR ERVK 302 401 -2 7 1377 233 283 132 40 chr11 103880804 103880872 -17962984 - RMER2 LTR ERV1 -27 540 466 7 1377 3337 48 8 0 chr11 103880872 103881269 -17962587 + MTB LTR MaLR 1 400 0 7 1377 233 283 132 40 chr11 103881269 103881351 -17962505 - RMER2 LTR ERV1 -102 465 376 7 1377 675 213 3 2 chr11 103881978 103882106 -17961750 + B3A SINE B2 1 130 -65 7 1377 333 100 0 0 chr11 103882121 103882171 -17961685 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1377 377 195 48 24 chr11 103882531 103882615 -17961241 - ID_B1 SINE B4 -33 191 106 7 1377 542 268 134 117 chr11 103882622 103883129 -17960727 + RMER20B LTR ERVK 1 575 -52 7 1377 314 270 0 0 chr11 103883362 103883425 -17960431 - ID SINE ID -152 72 10 7 1377 570 234 53 30 chr11 103884482 103884539 -17959317 + ID SINE ID 23 82 -142 7 1377 253 312 101 30 chr11 103884539 103884638 -17959218 + B1_Mm SINE Alu 1 106 -41 7 1377 323 238 0 0 chr11 103884957 103885020 -17958836 + MIR SINE MIR 106 168 -94 7 1377 371 244 5 211 chr11 103885097 103885305 -17958551 + RSINE1 SINE B4 1 165 0 7 1377 981 260 45 45 chr11 103885637 103885927 -17957929 - B4 SINE B4 -2 290 1 7 1377 452 267 58 22 chr11 103885935 103886073 -17957783 - ID_B1 SINE B4 -3 221 79 7 1377 358 262 9 72 chr11 103886042 103886153 -17957703 - ID_B1 SINE B4 -33 191 88 7 1377 704 22 11 0 chr11 103886320 103886410 -17957446 + (TC)n Simple_repeat Simple_repeat 1 91 0 7 1377 201 39 0 0 chr11 103886821 103886847 -17957009 + (TGGGGG)n Simple_repeat Simple_repeat 1 26 0 7 1377 443 281 22 15 chr11 103887188 103887325 -17956531 + RMER15 LTR ERVL 422 559 -16 7 1377 237 226 129 12 chr11 103887379 103887464 -17956392 - MIRb SINE MIR -56 212 118 7 1377 390 308 96 28 chr11 103887603 103887780 -17956076 - MER58A DNA MER1_type -35 189 1 7 1377 862 157 27 29 chr11 103887864 103888029 -17955827 + B3A SINE B2 1 161 -55 7 1377 529 215 0 45 chr11 103888098 103888210 -17955646 + PB1D10 SINE Alu 2 108 -9 7 1377 240 194 83 0 chr11 103889127 103889199 -17954657 + L1M2 LINE L1 2745 2822 -3321 7 1377 801 162 7 75 chr11 103889268 103889415 -17954441 - RLTR14 LTR ERV1 0 382 246 7 1377 886 171 17 24 chr11 103889411 103889603 -17954253 - B3 SINE B2 -7 188 1 7 1377 1280 204 26 59 chr11 103889597 103889621 -17954235 - RLTR14 LTR ERV1 -114 268 243 7 1377 450 0 0 0 chr11 103889621 103889671 -17954185 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1377 1280 204 26 59 chr11 103889671 103889917 -17953939 - RLTR14 LTR ERV1 -140 242 9 7 1377 268 273 82 0 chr11 103890186 103890300 -17953556 - MIRb SINE MIR -122 146 9 7 1377 224 295 174 37 chr11 103890324 103890433 -17953423 - MIR SINE MIR -63 145 22 7 1377 302 289 106 16 chr11 103891141 103891264 -17952592 + MLT1F1 LTR MaLR 2 135 -434 7 1377 1248 206 84 14 chr11 103891274 103891570 -17952286 + MTEb LTR MaLR 63 379 0 7 1377 279 145 0 52 chr11 103891679 103891737 -17952119 + B1_Mus2 SINE Alu 5 59 -88 8 1377 307 156 0 0 chr11 103891737 103891782 -17952074 + G-rich Low_complexity Low_complexity 113 157 0 8 1377 368 119 0 0 chr11 103891782 103891841 -17952015 + B1_Mur4 SINE Alu 42 100 -50 8 1377 333 272 98 0 chr11 103891854 103891946 -17951910 + MLT1F1 LTR MaLR 309 409 -160 7 1377 297 0 0 0 chr11 103891961 103891994 -17951862 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1377 507 216 112 0 chr11 103892018 103892134 -17951722 - RSINE1 SINE B4 -35 130 2 8 1377 339 256 52 70 chr11 103892158 103892290 -17951566 + MLT1F1 LTR MaLR 386 535 -34 7 1377 1789 101 92 118 chr11 103892399 103892737 -17951119 - ORR1A4 LTR MaLR 0 329 1 8 1377 196 250 103 0 chr11 103895057 103895125 -17948731 + MIR SINE MIR 109 183 -79 8 1377 514 177 377 0 chr11 103895145 103895275 -17948581 + B4 SINE B4 1 179 -113 8 1377 384 119 0 0 chr11 103895277 103895336 -17948520 + (CATA)n Simple_repeat Simple_repeat 4 62 0 8 1377 322 143 20 0 chr11 103895365 103895414 -17948442 + HAL1-3A_ME LINE L1 1969 2018 -840 8 1377 798 203 14 14 chr11 103895726 103895871 -17947985 - B1_Mus2 SINE Alu -1 146 2 8 1377 222 338 14 0 chr11 103895957 103896028 -17947828 - BC1_Mm scRNA scRNA -62 90 19 8 1377 2603 127 30 0 chr11 103897742 103898113 -17945743 - RLTR14 LTR ERV1 0 382 1 8 1377 2688 133 8 92 chr11 103898343 103898841 -17945015 - RMER6B LTR ERVK -5 456 1 8 1377 586 266 73 0 chr11 103898963 103899087 -17944769 + ID_B1 SINE B4 79 211 -13 8 1377 220 229 0 0 chr11 103899109 103899157 -17944699 + A-rich Low_complexity Low_complexity 1 48 0 8 1377 567 332 79 45 chr11 103899220 103899690 -17944166 - L1ME4a LINE L1 -1 6123 5638 8 1377 654 149 13 7 chr11 103900194 103900343 -17943513 + (CA)n Simple_repeat Simple_repeat 1 150 0 8 1377 236 296 42 0 chr11 103900390 103900461 -17943395 - MIR3 SINE MIR -26 182 109 8 1377 6835 30 0 1 chr11 103900476 103901264 -17942592 - L1Md_A LINE L1 0 6582 5796 8 1377 680 0 0 12 chr11 103902571 103902652 -17941204 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 8 1377 483 18 0 0 chr11 103903033 103903089 -17940767 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1377 26 30 0 0 chr11 103903250 103903283 -17940573 + AT_rich Low_complexity Low_complexity 1 33 0 8 1377 1215 68 0 0 chr11 103903302 103903449 -17940407 + B1_Mus2 SINE Alu 1 147 0 8 1377 351 0 0 0 chr11 103903528 103903567 -17940289 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 8 1377 442 316 7 7 chr11 103903568 103903705 -17940151 - ID_B1 SINE B4 -2 222 86 8 1377 428 268 85 131 chr11 103903728 103903934 -17939922 - B4 SINE B4 0 292 93 8 1377 823 143 56 14 chr11 103903934 103904076 -17939780 - B1_Mur2 SINE Alu 0 149 2 8 1377 428 268 85 131 chr11 103904076 103904174 -17939682 - B4 SINE B4 -200 92 2 8 1377 486 49 0 0 chr11 103904723 103904784 -17939072 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 8 1377 560 278 121 6 chr11 103904845 103905019 -17938837 - MER20 DNA MER1_type -2 217 24 8 1377 216 0 0 0 chr11 103905019 103905043 -17938813 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1377 535 234 12 0 chr11 103905369 103905540 -17938316 + (CA)n Simple_repeat Simple_repeat 2 174 0 8 1377 300 125 17 35 chr11 103905541 103905599 -17938257 + HAL1-3A_ME LINE L1 1972 2028 -830 8 1377 257 0 30 0 chr11 103906283 103906316 -17937540 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1377 252 221 124 34 chr11 103906712 103906801 -17937055 - PB1D10 SINE Alu -6 111 15 8 1377 238 276 58 0 chr11 103906728 103906815 -17937041 - ID_B1 SINE B4 -52 172 81 8 1377 1254 266 29 29 chr11 103907033 103907374 -17936482 + ORR1D2 LTR MaLR 3 343 -27 8 1377 565 268 9 0 chr11 103907749 103907861 -17935995 + ID_B1 SINE B4 106 218 -6 8 1377 229 258 76 133 chr11 103908036 103908165 -17935691 - L2c LINE L2 -1 3386 3248 8 1377 1401 231 60 110 chr11 103908481 103908530 -17935326 - MTEa LTR MaLR 0 379 335 8 1377 2017 184 30 11 chr11 103908530 103908899 -17934957 - ORR1C1 LTR MaLR 0 378 3 8 1377 1401 231 60 110 chr11 103908899 103909248 -17934608 - MTEa LTR MaLR -45 334 1 8 1377 269 338 137 82 chr11 103909261 103909516 -17934340 - MLT1J LTR MaLR -173 339 71 8 1377 1644 51 69 5 chr11 103910615 103910831 -17933025 - MTB LTR MaLR 0 400 171 8 1377 1308 76 0 0 chr11 103910962 103911133 -17932723 - MTB LTR MaLR -236 171 1 8 1377 261 294 65 0 chr11 103911453 103911545 -17932311 + MIR SINE MIR 77 174 -88 8 1377 431 270 24 156 chr11 103912769 103912806 -17931050 - B2_Mm2 SINE B2 -11 184 151 8 1377 520 35 58 0 chr11 103912806 103912893 -17930963 + (TG)n Simple_repeat Simple_repeat 1 92 0 8 1377 760 285 0 46 chr11 103912893 103913066 -17930790 - B3A SINE B2 -32 166 2 8 1377 443 294 121 65 chr11 103913323 103913538 -17930318 + LTR16A LTR ERVL 218 444 -7 8 1377 300 53 0 0 chr11 103913561 103913599 -17930257 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 8 1377 705 235 26 47 chr11 103915119 103915157 -17928699 - B2_Mm2 SINE B2 -7 188 157 8 1377 291 54 0 0 chr11 103915157 103915194 -17928662 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1377 823 183 85 0 chr11 103915194 103915347 -17928509 - B3 SINE B2 -50 166 1 8 1377 218 238 128 23 chr11 103915708 103915794 -17928062 + MIR3 SINE MIR 70 164 -44 8 1377 958 211 77 0 chr11 103916181 103916389 -17927467 + ID_B1 SINE B4 1 224 0 8 1377 196 339 31 69 chr11 103917928 103918058 -17925798 + MIRc SINE MIR 2 126 -142 8 1377 274 214 139 23 chr11 103918079 103918090 -17925766 + MT2B LTR ERVL 145 165 -436 8 1377 448 214 119 0 chr11 103918090 103918174 -17925682 + B1_Mur2 SINE Alu 1 94 -55 8 1377 1212 235 159 40 chr11 103918126 103918434 -17925422 + RLTR20D LTR ERVK 118 465 -103 8 1377 495 0 0 0 chr11 103918434 103918489 -17925367 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1377 1212 235 159 40 chr11 103918489 103918583 -17925273 + RLTR20D LTR ERVK 466 567 -1 8 1377 367 238 75 9 chr11 103919021 103919127 -17924729 - PB1D7 SINE Alu -6 114 2 8 1377 1138 250 35 137 chr11 103919170 103919372 -17924484 - MTE2a LTR MaLR -14 365 176 8 1377 1026 76 0 0 chr11 103919372 103919517 -17924339 + (TC)n Simple_repeat Simple_repeat 1 145 0 8 1377 746 174 29 7 chr11 103919518 103919657 -17924199 - B1_Mur4 SINE Alu -6 144 3 8 1377 1138 250 35 137 chr11 103919657 103919855 -17924001 - MTE2a LTR MaLR -204 175 4 8 1377 1160 300 50 22 chr11 103920038 103920399 -17923457 + MTE2b LTR MaLR 4 374 -5 8 1377 197 342 103 51 chr11 103920465 103920582 -17923274 + MIRb SINE MIR 21 143 -125 8 1377 218 247 21 73 chr11 103920916 103921012 -17922844 - MIR3 SINE MIR -27 181 91 8 1377 861 119 48 0 chr11 103921637 103921763 -17922093 + B1_Mur1 SINE Alu 13 144 -5 8 1377 194 322 0 0 chr11 103922823 103922882 -17920974 - MIR SINE MIR -68 140 82 8 1377 871 243 38 0 chr11 103923591 103923776 -17920080 - MTEb LTR MaLR -164 215 24 8 1377 1194 15 8 0 chr11 103923842 103923976 -17919880 + B1_Mm SINE Alu 2 136 -11 8 1377 233 29 0 29 chr11 103923976 103924011 -17919845 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 8 1377 2481 161 31 39 chr11 103924060 103924550 -17919306 + RLTR28 LTR ERVL 7 492 -32 8 1377 1917 209 35 15 chr11 103924605 103924887 -17918969 - MTD LTR MaLR -8 411 128 8 1377 219 36 0 0 chr11 103924887 103924915 -17918941 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 8 1377 1917 209 35 15 chr11 103924915 103925026 -17918830 - MTD LTR MaLR -292 127 11 8 1377 697 272 113 27 chr11 103925596 103925853 -17918003 - B4A SINE B4 -13 279 1 8 1377 565 211 7 105 chr11 103925869 103926012 -17917844 - ID_B1 SINE B4 0 224 96 8 1377 239 195 60 83 chr11 103926030 103926114 -17917742 + MIRc SINE MIR 69 150 -118 8 1377 249 296 26 9 chr11 103926828 103926944 -17916912 + L1M5 LINE L1 5352 5469 -693 8 1377 481 217 122 2 chr11 103926945 103927077 -17916779 + ID_B1 SINE B4 65 207 -17 8 1377 643 308 119 16 chr11 103927113 103927492 -17916364 + L1MA5 LINE L1 5506 5923 -377 8 1377 314 293 0 0 chr11 103927568 103927650 -17916206 + PB1D10 SINE Alu 1 82 -35 8 1377 311 284 33 33 chr11 103927733 103927853 -17916003 + L1MA5 LINE L1 5995 6114 -177 8 1377 883 258 0 12 chr11 103927867 103928032 -17915824 - RSINE1 SINE B4 0 165 3 8 1377 206 143 20 0 chr11 103928127 103928176 -17915680 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 8 1377 324 0 0 0 chr11 103928278 103928314 -17915542 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1377 217 207 0 79 chr11 103928368 103928431 -17915425 + G-rich Low_complexity Low_complexity 6 63 0 8 1377 556 253 17 23 chr11 103928512 103928686 -17915170 + L1MA5 LINE L1 6111 6283 -8 8 1377 531 286 15 40 chr11 103928791 103928991 -17914865 + MIRb SINE MIR 66 260 -8 8 1377 381 276 0 28 chr11 103929022 103929130 -17914726 - MIRb SINE MIR -84 184 80 8 1377 542 268 35 35 chr11 103929328 103929471 -17914385 + RSINE1 SINE B4 20 162 -3 8 1377 327 204 58 66 chr11 103929531 103929678 -17914178 + MTD LTR MaLR 224 419 0 8 1377 351 0 0 0 chr11 103929902 103929941 -17913915 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1377 475 246 142 8 chr11 103930095 103930222 -17913634 - MTE2b LTR MaLR -5 374 231 8 1377 546 234 31 39 chr11 103930218 103930347 -17913509 - MTE2b LTR MaLR -251 128 1 8 1377 487 220 38 57 chr11 103930441 103930547 -17913309 - RSINE1 SINE B4 -32 133 30 8 1377 837 144 14 43 chr11 103930733 103930871 -17912985 + B1_Mus2 SINE Alu 3 136 -11 8 1377 1151 58 0 13 chr11 103930874 103931031 -17912825 + (GAAA)n Simple_repeat Simple_repeat 4 158 0 8 1377 232 125 0 0 chr11 103931032 103931064 -17912792 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 8 1377 938 167 0 6 chr11 103931064 103931245 -17912611 + GA-rich Low_complexity Low_complexity 1 180 0 8 1377 559 271 154 9 chr11 103931536 103931756 -17912100 - RMER15 LTR ERVL -13 562 311 8 1377 803 261 102 16 chr11 103931784 103932094 -17911762 + ORR1E LTR MaLR 22 354 -5 8 1377 1868 159 129 14 chr11 103932244 103932594 -17911262 - ORR1B1 LTR MaLR 0 394 5 8 1377 2202 63 14 24 chr11 103933027 103933319 -17910537 + L1_Mus1 LINE L1 6279 6567 0 8 1377 2241 238 22 10 chr11 103933472 103933964 -17909892 + ORR1E-int LTR MaLR 21 518 -852 8 1377 644 173 18 60 chr11 103934284 103934450 -17909406 - FordPrefect DNA Tip100 -728 955 797 9 1377 3662 218 51 29 chr11 103934461 103935291 -17908565 + ORR1E-int LTR MaLR 523 1370 0 8 1377 718 225 71 22 chr11 103935293 103935549 -17908307 + ORR1E LTR MaLR 1 284 -86 8 1377 246 132 23 35 chr11 103935574 103935660 -17908196 + (TCTG)n Simple_repeat Simple_repeat 2 86 0 9 1377 592 211 78 30 chr11 103935663 103935865 -17907991 + ORR1E LTR MaLR 154 366 -8 8 1377 333 0 0 0 chr11 103937686 103937723 -17906133 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 9 1377 294 272 31 52 chr11 103937739 103937836 -17906020 + PB1D10 SINE Alu 3 97 -20 9 1377 627 51 0 0 chr11 103937957 103938036 -17905820 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 9 1377 369 0 0 0 chr11 103938554 103938595 -17905261 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1377 280 359 0 0 chr11 103938709 103938801 -17905055 + MIR3 SINE MIR 110 201 -7 9 1377 438 231 0 0 chr11 103938850 103938967 -17904889 + (TG)n Simple_repeat Simple_repeat 2 118 0 9 1377 2539 129 87 5 chr11 103939046 103939435 -17904421 - MTC LTR MaLR 0 421 1 9 1377 590 261 247 3 chr11 103939481 103939773 -17904083 - Lx8 LINE L1 -181 7292 6930 9 1377 1091 216 89 4 chr11 103939781 103940027 -17903829 - Lx6 LINE L1 -145 7315 7049 9 172 398 240 125 0 chr11 103940043 103940139 -17903717 - Lx8 LINE L1 -557 6916 6809 9 1378 895 286 10 0 chr11 103940509 103940715 -17903141 + B4 SINE B4 2 209 -83 9 1378 249 98 0 0 chr11 103940753 103940794 -17903062 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 9 1378 22 56 0 0 chr11 103941220 103941256 -17902600 + AT_rich Low_complexity Low_complexity 1 36 0 9 1378 946 92 0 0 chr11 103941328 103941459 -17902397 - L1_Mus1 LINE L1 0 6567 6437 9 1378 788 173 0 8 chr11 103941531 103941665 -17902191 + B1_Mur1 SINE Alu 17 149 0 9 1378 571 274 37 37 chr11 103941761 103941924 -17901932 + Tigger5 DNA MER2_type 95 257 -2149 9 1378 3567 152 101 19 chr11 103942013 103942705 -17901151 + RMER1B Other Other 317 1065 -1 9 1378 416 269 42 14 chr11 103942705 103942848 -17901008 + Tigger5 DNA MER2_type 2211 2357 -49 9 1378 638 270 0 12 chr11 103942939 103943104 -17900752 + HAL1-2a_MD LINE L1 2345 2507 -517 9 1378 219 125 0 0 chr11 103943104 103943144 -17900712 + (CCA)n Simple_repeat Simple_repeat 1 40 0 9 1378 356 215 0 9 chr11 103943276 103943384 -17900472 + GA-rich Low_complexity Low_complexity 4 110 0 9 1378 888 93 37 6 chr11 103943755 103943918 -17899938 + (TCTCCC)n Simple_repeat Simple_repeat 3 170 0 9 1378 189 0 0 0 chr11 103944626 103944647 -17899209 + (C)n Simple_repeat Simple_repeat 1 21 0 9 1378 1798 153 141 41 chr11 103945278 103945619 -17898237 + ORR1C1 LTR MaLR 4 378 0 9 1378 300 301 72 101 chr11 103945666 103945984 -17897872 - ORR1E LTR MaLR -5 354 46 9 1378 518 257 93 46 chr11 103946940 103947091 -17896765 - RSINE1 SINE B4 -5 160 3 9 1378 787 313 10 0 chr11 103948097 103948295 -17895561 - ID_B1 SINE B4 -24 200 1 9 1378 369 0 0 0 chr11 103949426 103949467 -17894389 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1378 469 245 64 55 chr11 103949470 103949672 -17894184 - B4A SINE B4 -18 274 32 9 1378 875 310 124 30 chr11 103949690 103950199 -17893657 - L1MD1 LINE L1 -8 6234 5678 9 1378 881 244 69 5 chr11 103950209 103950411 -17893445 - B3 SINE B2 0 216 2 9 1378 226 200 169 0 chr11 103950463 103950528 -17893328 - RSINE1 SINE B4 0 165 90 9 1378 397 342 130 1 chr11 103950608 103950930 -17892926 - L1MD1 LINE L1 -684 5675 5312 9 1378 563 192 0 0 chr11 103950969 103951073 -17892783 + PB1D9 SINE Alu 7 110 -10 9 1378 524 211 18 0 chr11 103951281 103951390 -17892466 - PB1D9 SINE Alu -2 118 8 9 1378 302 211 0 148 chr11 103951301 103951429 -17892427 - MT2B LTR ERVL -351 250 142 9 1378 217 130 18 36 chr11 103951429 103951485 -17892371 + (TTGG)n Simple_repeat Simple_repeat 2 56 0 9 1378 972 200 11 5 chr11 103951493 103951674 -17892182 - ID_B1 SINE B4 -37 187 5 9 1378 2517 95 3 0 chr11 103951674 103951999 -17891857 - ORR1A2 LTR MaLR 0 327 2 9 1378 569 221 7 99 chr11 103952586 103952727 -17891129 + ID_B1 SINE B4 86 213 -11 9 1378 376 244 13 13 chr11 103952729 103952808 -17891048 + ID4 SINE ID 3 81 -2 9 1378 503 243 25 100 chr11 103952808 103952820 -17891036 + B1F1 SINE Alu 137 148 -1 9 1378 930 276 25 0 chr11 103953099 103953338 -17890518 + B4A SINE B4 1 245 -47 9 1378 614 261 38 6 chr11 103953333 103953491 -17890365 + B3 SINE B2 48 210 -6 9 1378 268 268 0 0 chr11 103953506 103953562 -17890294 + B4A SINE B4 225 280 -12 9 1378 245 29 0 29 chr11 103953603 103953638 -17890218 + (GGA)n Simple_repeat Simple_repeat 1 34 0 9 1378 3192 36 36 15 chr11 103953792 103954184 -17889672 - MTB LTR MaLR 0 400 1 9 1378 801 84 6 55 chr11 103954184 103954347 -17889509 - MTB-int LTR MaLR 0 1098 944 9 1378 5542 121 81 15 chr11 103955011 103956038 -17887818 - MTB-int LTR MaLR -159 1099 5 9 1378 2897 77 30 23 chr11 103956044 103956196 -17887660 - MTB LTR MaLR 0 400 256 9 1378 1101 85 0 7 chr11 103956196 103956338 -17887518 + B1_Mus1 SINE Alu 1 141 -7 9 1378 621 0 0 0 chr11 103956338 103956407 -17887449 + (CAAG)n Simple_repeat Simple_repeat 2 70 0 9 1378 2897 77 30 23 chr11 103956407 103956650 -17887206 - MTB LTR MaLR -145 255 2 9 1378 231 308 66 8 chr11 103957063 103957184 -17886672 + MIRc SINE MIR 62 189 -79 9 1378 180 111 0 0 chr11 103957493 103957520 -17886336 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1378 326 258 499 84 chr11 103957625 103957816 -17886040 - B4 SINE B4 -4 288 18 9 1378 213 185 37 0 chr11 103958228 103958282 -17885574 + T-rich Low_complexity Low_complexity 2 57 0 9 1378 230 0 33 0 chr11 103958284 103958314 -17885542 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 9 1378 420 221 179 8 chr11 103958337 103958460 -17885396 - B1_Mur2 SINE Alu -1 148 5 9 1378 325 245 9 89 chr11 103958466 103958578 -17885278 - PB1D10 SINE Alu -2 115 13 9 1378 502 252 82 19 chr11 103958496 103958654 -17885202 - ID_B1 SINE B4 -51 173 6 9 1378 560 245 0 0 chr11 103958669 103958775 -17885081 - PB1D10 SINE Alu -7 110 5 9 1378 465 237 50 8 chr11 103958776 103958895 -17884961 + ID_B1 SINE B4 30 153 -71 9 1378 644 262 107 25 chr11 103958916 103959112 -17884744 + ID_B1 SINE B4 9 220 -4 9 1378 766 215 5 119 chr11 103960059 103960244 -17883612 + RSINE1 SINE B4 2 165 0 9 1378 613 237 240 11 chr11 103961821 103961994 -17881862 + ID_B1 SINE B4 3 217 -7 9 1378 405 0 0 0 chr11 103961994 103962039 -17881817 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 9 1378 228 326 174 0 chr11 103963184 103963322 -17880534 + MIRc SINE MIR 42 203 -65 9 1378 261 109 0 0 chr11 103964272 103964318 -17879538 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1378 275 342 65 42 chr11 103964905 103965073 -17878783 + Charlie5 DNA MER1_type 2239 2410 -214 9 1378 645 118 0 60 chr11 103965136 103965253 -17878603 - B1_Mur2 SINE Alu -21 128 19 9 1378 288 318 35 26 chr11 103965159 103965272 -17878584 - B4A SINE B4 -98 194 81 9 1378 286 284 93 107 chr11 103965272 103965364 -17878492 - MT2B LTR ERVL -337 264 63 9 1378 502 180 0 12 chr11 103965377 103965476 -17878380 - B1F SINE Alu -24 93 3 9 1378 228 149 0 0 chr11 103965727 103965774 -17878082 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1378 246 308 26 0 chr11 103966287 103966365 -17877491 + ID4 SINE ID 2 81 -2 9 1378 183 300 17 0 chr11 103967626 103967686 -17876170 + L2b LINE L2 3309 3369 -6 9 1378 204 414 43 0 chr11 103967849 103967989 -17875867 - L2a LINE L2 -8 3418 3273 9 1378 259 312 10 21 chr11 103968048 103968212 -17875644 - L2a LINE L2 -313 3113 2955 9 1378 350 277 123 0 chr11 103969076 103969206 -17874650 + RSINE1 SINE B4 3 148 -17 9 1378 386 335 30 12 chr11 103969428 103969597 -17874259 + C-rich Low_complexity Low_complexity 4 175 0 9 1378 243 0 0 0 chr11 103969729 103969756 -17874100 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1378 286 266 132 54 chr11 103969871 103970038 -17873818 - MIR SINE MIR -69 193 14 9 1378 243 0 0 0 chr11 103970265 103970292 -17873564 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 9 1378 452 308 0 0 chr11 103970292 103970412 -17873444 - ID_B1 SINE B4 -14 210 91 9 1378 456 274 67 27 chr11 103970463 103970613 -17873243 + ID_B1 SINE B4 56 211 -13 9 1378 273 327 63 94 chr11 103970971 103971322 -17872534 - ORR1D1 LTR MaLR -7 367 28 9 1378 416 282 38 8 chr11 103971481 103971613 -17872243 + B4A SINE B4 32 167 -125 9 1378 978 143 0 7 chr11 103971918 103972066 -17871790 - B1_Mus2 SINE Alu 0 147 1 9 1378 220 227 133 10 chr11 103972181 103972279 -17871577 + MIRm SINE MIR 40 149 -127 9 1378 591 254 140 35 chr11 103972302 103972495 -17871361 + B3 SINE B2 1 191 -25 9 1378 750 88 24 0 chr11 103972565 103972690 -17871166 + (GA)n Simple_repeat Simple_repeat 2 129 0 9 1378 242 276 40 19 chr11 103973555 103973661 -17870195 + L1M5 LINE L1 5715 5822 -302 9 1378 4168 95 32 2 chr11 103973914 103974481 -17869375 - MT2B2 LTR ERVL 0 584 1 9 1378 1270 229 106 125 chr11 103974836 103975107 -17868749 - MTD LTR MaLR -2 417 124 9 1378 781 285 14 14 chr11 103975107 103975317 -17868539 + B3 SINE B2 2 211 -5 9 1378 1270 229 106 125 chr11 103975317 103975470 -17868386 - MTD LTR MaLR -296 123 1 9 1378 335 231 0 0 chr11 103975482 103975547 -17868309 - ID_B1 SINE B4 -33 191 127 9 1378 210 251 158 42 chr11 103975679 103975831 -17868025 + MIRc SINE MIR 11 182 -94 9 1378 725 271 71 60 chr11 103977169 103977436 -17866420 - B4A SINE B4 -19 273 4 9 1378 233 296 62 90 chr11 103977694 103977839 -17866017 + MT2B2 LTR ERVL 124 264 -320 9 1378 575 173 102 8 chr11 103977744 103977872 -17865984 + B1F1 SINE Alu 10 149 0 9 1378 615 259 38 12 chr11 103978359 103978504 -17865352 + RSINE1 SINE B4 2 151 -14 9 1378 216 0 0 0 chr11 103978504 103978528 -17865328 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1378 615 259 38 12 chr11 103978528 103978542 -17865314 + RSINE1 SINE B4 152 165 0 9 1378 665 267 105 0 chr11 103978589 103978761 -17865095 + ID_B1 SINE B4 3 192 -32 9 1378 823 148 59 0 chr11 103979355 103979490 -17864366 + B1_Mur4 SINE Alu 3 145 -5 9 1378 1859 150 7 3 chr11 103980018 103980326 -17863530 - RLTR14 LTR ERV1 0 382 74 9 1378 229 328 109 29 chr11 103980335 103980473 -17863383 + RMER13A LTR ERVK 2 150 -710 1 1378 619 291 40 69 chr11 103980443 103980690 -17863166 + RLTR26 LTR ERVK 178 417 -225 1 1378 315 83 42 0 chr11 103980889 103980937 -17862919 - RLTR14 LTR ERV1 -332 50 1 1 1378 824 255 10 24 chr11 103981027 103981236 -17862620 - B3 SINE B2 0 216 11 1 1378 2434 181 58 71 chr11 103981225 103981806 -17862050 - RMER4B LTR ERVK -11 574 1 1 1378 249 132 0 0 chr11 103981806 103981844 -17862012 - B2_Mm2 SINE B2 -156 39 2 1 1378 236 240 20 0 chr11 103982270 103982320 -17861536 + BC1_Mm scRNA scRNA 23 73 -79 1 1378 263 28 0 27 chr11 103982322 103982359 -17861497 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1378 928 164 13 20 chr11 103982397 103982546 -17861310 - B1_Mur2 SINE Alu 0 149 2 1 1378 198 79 35 106 chr11 103982707 103982877 -17860979 + (CCCCAG)n Simple_repeat Simple_repeat 2 159 0 1 1378 581 262 186 122 chr11 103982985 103983039 -17860817 - Lx8 LINE L1 0 7473 7425 1 1378 252 0 0 0 chr11 103983039 103983067 -17860789 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1378 581 262 186 122 chr11 103983067 103983464 -17860392 - Lx8 LINE L1 -49 7424 6993 1 1378 308 296 23 0 chr11 103983485 103983573 -17860283 - B1F SINE Alu -58 91 2 1 1378 365 294 14 56 chr11 103983573 103983657 -17860199 - ID SINE ID -142 82 5 1 1378 205 234 109 0 chr11 103984169 103984233 -17859623 - MIRm SINE MIR -155 121 51 1 1378 3869 166 108 84 chr11 103984624 103985479 -17858377 + RMER19B LTR ERVK 1 883 -19 1 1378 1390 64 12 0 chr11 103985479 103985652 -17858204 + B2_Mm1t SINE B2 1 175 -18 1 1378 3869 166 108 84 chr11 103985652 103985677 -17858179 + RMER19B LTR ERVK 884 902 0 1 1378 497 241 49 64 chr11 103986390 103986594 -17857262 + ID_B1 SINE B4 24 224 0 1 1378 781 135 7 36 chr11 103986457 103986595 -17857261 + B1_Mus2 SINE Alu 14 147 0 1 1378 186 133 0 0 chr11 103986595 103986625 -17857231 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 1378 384 272 10 0 chr11 103986647 103986750 -17857106 + ID_B1 SINE B4 115 218 -6 1 1378 1074 233 9 0 chr11 103986750 103986969 -17856887 + ID_B1 SINE B4 3 223 -1 1 1378 286 229 43 0 chr11 103987000 103987070 -17856786 + PB1D10 SINE Alu 23 95 -22 1 1378 528 100 0 0 chr11 103987072 103987152 -17856704 + (GGA)n Simple_repeat Simple_repeat 2 81 0 1 1378 321 191 0 16 chr11 103987311 103987375 -17856481 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 1 1378 338 314 62 19 chr11 103987411 103987573 -17856283 - L1MC5 LINE L1 -88 7873 7705 1 1378 387 0 0 0 chr11 103987575 103987618 -17856238 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1378 503 288 0 16 chr11 103987622 103987749 -17856107 - B3A SINE B2 -33 165 41 1 1378 460 309 60 49 chr11 103987876 103988060 -17855796 - MER20 DNA MER1_type -21 198 13 1 1378 677 172 20 46 chr11 103988229 103988381 -17855475 + B1_Mur3 SINE Alu 1 148 -1 1 1378 27 92 0 0 chr11 103988486 103988562 -17855294 + AT_rich Low_complexity Low_complexity 1 76 0 1 1378 198 262 197 15 chr11 103988866 103988998 -17854858 + MIRc SINE MIR 65 220 -48 1 1378 25 0 0 0 chr11 103989337 103989362 -17854494 + AT_rich Low_complexity Low_complexity 1 25 0 1 1378 791 273 52 5 chr11 103989368 103989578 -17854278 + ID_B1 SINE B4 2 221 -3 1 1378 442 259 88 66 chr11 103989591 103989818 -17854038 + B4A SINE B4 9 240 -52 1 1378 453 296 0 70 chr11 103989820 103989976 -17853880 + RSINE1 SINE B4 15 159 -6 1 1378 785 111 8 0 chr11 103989998 103990115 -17853741 - B1_Mur4 SINE Alu -1 149 32 1 1378 25 31 0 0 chr11 103990128 103990160 -17853696 + AT_rich Low_complexity Low_complexity 1 32 0 1 1378 333 277 0 24 chr11 103990162 103990247 -17853609 + RSINE1 SINE B4 83 165 0 1 1378 264 231 29 51 chr11 103990258 103990395 -17853461 + ORR1B1-int LTR MaLR 621 754 -755 1 1378 783 138 69 0 chr11 103990296 103990426 -17853430 + B1_Mus1 SINE Alu 10 148 0 1 1378 381 43 0 0 chr11 103990565 103990612 -17853244 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 1 1378 451 329 55 51 chr11 103990628 103990881 -17852975 + L2c LINE L2 3133 3386 -1 1 1378 639 330 66 14 chr11 103990971 103991221 -17852635 + MER5C DNA MER1_type 5 271 -42 1 1378 599 245 29 7 chr11 103991221 103991361 -17852495 + B1F SINE Alu 1 143 -6 1 1378 639 330 66 14 chr11 103991361 103991399 -17852457 + MER5C DNA MER1_type 272 308 -5 1 1378 405 0 0 0 chr11 103991404 103991449 -17852407 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1378 261 360 43 7 chr11 103992329 103992469 -17851387 - MIRb SINE MIR -81 187 43 1 1378 240 277 46 0 chr11 103992754 103992819 -17851037 + MIRm SINE MIR 82 149 -127 1 1378 201 147 0 0 chr11 103993439 103993473 -17850383 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 1378 323 219 17 42 chr11 103994008 103994127 -17849729 + G-rich Low_complexity Low_complexity 5 120 0 1 1378 446 61 15 0 chr11 103996420 103996486 -17847370 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1378 287 348 11 0 chr11 103997473 103997592 -17846264 + MIR SINE MIR 23 143 -133 1 1378 364 295 0 10 chr11 103998598 103998694 -17845162 + B4 SINE B4 1 95 -197 1 1378 2010 173 150 5 chr11 103998695 103999053 -17844803 + RMER1C Other Other 806 1191 -151 1 1378 824 102 0 14 chr11 103999053 103999192 -17844664 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 1 1378 2010 173 150 5 chr11 103999192 103999246 -17844610 + RMER1C Other Other 1192 1277 -65 1 1378 522 301 18 104 chr11 103999261 103999483 -17844373 + B4A SINE B4 84 286 -6 1 1378 913 226 32 23 chr11 103999725 103999942 -17843914 + ID_B1 SINE B4 2 220 -4 1 1378 207 0 0 0 chr11 103999942 103999965 -17843891 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1378 261 281 16 0 chr11 104000745 104000809 -17843047 - Charlie12 DNA MER1_type 0 2873 2809 1 1378 294 298 57 71 chr11 104002048 104002189 -17841667 + MIRc SINE MIR 20 158 -110 2 1378 748 274 31 55 chr11 104002406 104002661 -17841195 - Charlie10 DNA MER1_type -2570 252 4 3 1378 592 290 78 17 chr11 104003526 104003705 -17840151 - B4 SINE B4 -91 201 12 4 1378 287 302 103 0 chr11 104003687 104003813 -17840043 - MER20 DNA MER1_type -5 214 76 5 1378 1869 188 50 8 chr11 104004659 104005018 -17838838 - ORR1C1 LTR MaLR 0 378 5 6 1378 254 232 18 0 chr11 104005159 104005215 -17838641 + MTD LTR MaLR 5 61 -358 7 1378 933 71 0 0 chr11 104005219 104005345 -17838511 - B1_Mus1 SINE Alu -21 127 2 8 1378 1273 201 161 12 chr11 104005348 104005671 -17838185 + MTD LTR MaLR 48 418 -1 7 1378 983 260 77 71 chr11 104005714 104006037 -17837819 - MTEb LTR MaLR 0 379 55 9 1378 329 221 0 42 chr11 104006074 104006145 -17837711 - B1_Mus2 SINE Alu -2 145 78 1 1378 221 309 59 76 chr11 104006429 104006548 -17837308 - MIRb SINE MIR -63 205 89 1 1378 191 273 130 0 chr11 104006652 104006729 -17837127 - MIRc SINE MIR -102 166 80 1 1378 581 193 102 15 chr11 104006911 104007048 -17836808 + B1F SINE Alu 1 149 0 1 1378 598 122 9 9 chr11 104007064 104007172 -17836684 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 1 1378 288 0 0 0 chr11 104007254 104007286 -17836570 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 1 1378 1039 260 81 15 chr11 104008321 104008594 -17835262 + B4A SINE B4 2 292 0 1 1378 216 97 0 0 chr11 104009087 104009118 -17834738 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1378 236 149 21 0 chr11 104009148 104009195 -17834661 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1378 1141 69 0 20 chr11 104009477 104009624 -17834232 + B1_Mus2 SINE Alu 1 144 -3 1 1378 2007 177 35 6 chr11 104010554 104010900 -17832956 + Lx5 LINE L1 6695 7050 0 1 1378 517 307 77 28 chr11 104010973 104011154 -17832702 + B4A SINE B4 1 190 -102 2 1378 249 180 0 0 chr11 104011315 104011365 -17832491 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1378 25 51 0 0 chr11 104011560 104011599 -17832257 + AT_rich Low_complexity Low_complexity 1 39 0 2 1378 770 125 142 0 chr11 104011684 104011804 -17832052 + B1_Mur3 SINE Alu 2 138 -11 2 1378 470 296 9 0 chr11 104011831 104011946 -17831910 + PB1D10 SINE Alu 1 116 -1 2 1378 501 339 18 0 chr11 104012072 104012240 -17831616 + Tigger12 DNA MER2_type 601 771 -1188 2 1378 225 0 0 0 chr11 104012291 104012316 -17831540 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 1378 200 149 21 0 chr11 104012913 104012960 -17830896 + (ATTG)n Simple_repeat Simple_repeat 2 49 0 2 1378 371 292 20 59 chr11 104015398 104015551 -17828305 - MIRc SINE MIR -105 163 17 2 1378 537 16 0 0 chr11 104016407 104016469 -17827387 + (GGGA)n Simple_repeat Simple_repeat 2 63 0 2 1378 324 364 98 23 chr11 104017097 104017311 -17826545 - MIRb SINE MIR -1 267 38 3 1378 199 267 0 0 chr11 104017440 104017485 -17826371 - MIRm SINE MIR -19 257 213 3 1378 669 110 0 10 chr11 104017582 104017683 -17826173 - B1_Mus2 SINE Alu 0 147 48 3 1378 248 225 0 101 chr11 104017632 104017711 -17826145 - RLTR25B LTR ERVK -530 498 428 3 1378 242 337 306 0 chr11 104018215 104018473 -17825383 + L2c LINE L2 3029 3365 -61 3 1378 238 246 59 44 chr11 104018503 104018639 -17825217 + Lx7 LINE L1 7554 7691 -5 3 1378 206 118 0 0 chr11 104018753 104018787 -17825069 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 3 1378 216 0 0 0 chr11 104020518 104020542 -17823314 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1378 257 278 57 3 chr11 104020803 104020908 -17822948 - MIRm SINE MIR -57 151 46 3 1378 219 276 122 6 chr11 104021738 104021835 -17822021 - MIR SINE MIR -121 147 46 3 1378 206 346 66 29 chr11 104022216 104022353 -17821503 + MIR3 SINE MIR 36 177 -31 4 1378 384 267 115 14 chr11 104022921 104023151 -17820705 - MIRb SINE MIR 0 262 7 4 1378 449 113 28 0 chr11 104024464 104024535 -17819321 - PB1D9 SINE Alu -5 115 43 4 1378 1251 28 7 0 chr11 104024558 104024703 -17819153 - B1_Mm SINE Alu 0 147 2 4 1378 227 143 41 0 chr11 104025361 104025410 -17818446 + CT-rich Low_complexity Low_complexity 3 53 0 4 1378 298 347 16 0 chr11 104025795 104025919 -17817937 - L1MC4a LINE L1 -2001 5881 5756 4 1378 254 280 34 93 chr11 104026375 104026493 -17817363 - MER5A1 DNA MER1_type -44 122 12 4 1378 679 302 4 63 chr11 104027234 104027297 -17816559 - ID_B1 SINE B4 -1 223 166 4 1378 1045 191 28 32 chr11 104027297 104027513 -17816343 + B3 SINE B2 1 215 -1 4 1378 679 302 4 63 chr11 104027513 104027686 -17816170 - ID_B1 SINE B4 -59 165 1 4 1378 218 346 72 36 chr11 104029011 104029149 -17814707 + MIRc SINE MIR 89 231 -37 4 1378 677 255 14 0 chr11 104029201 104029346 -17814510 + RSINE1 SINE B4 3 149 -16 5 1378 349 188 0 45 chr11 104029421 104029488 -17814368 + ID4 SINE ID 3 66 -17 5 1378 805 267 21 17 chr11 104029687 104029923 -17813933 - B4A SINE B4 -8 284 48 5 1378 531 313 36 27 chr11 104032075 104032298 -17811558 + MIR SINE MIR 37 261 -1 5 1378 207 0 0 0 chr11 104032313 104032336 -17811520 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1378 198 0 0 0 chr11 104033118 104033140 -17810716 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1378 573 336 27 33 chr11 104033494 104033793 -17810063 - RMER15 LTR ERVL 0 575 279 5 1378 474 75 0 0 chr11 104034397 104034464 -17809392 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1378 290 319 50 29 chr11 104038653 104038792 -17805064 - MIR SINE MIR -88 174 33 5 1378 312 119 0 0 chr11 104039995 104040054 -17803802 + (A)n Simple_repeat Simple_repeat 1 59 0 5 1378 335 208 16 16 chr11 104040175 104040297 -17803559 + CT-rich Low_complexity Low_complexity 1 122 0 6 1378 253 333 67 0 chr11 104040356 104040461 -17803395 - L1M4 LINE L1 -565 5613 5502 6 1378 1039 196 65 5 chr11 104040492 104040692 -17803164 - ID_B1 SINE B4 -9 215 4 6 1378 859 54 0 0 chr11 104040706 104040818 -17803038 - B2_Mm2 SINE B2 -82 113 2 6 1378 185 139 23 0 chr11 104040874 104040917 -17802939 + A-rich Low_complexity Low_complexity 3 46 0 6 1378 966 135 31 0 chr11 104041021 104041184 -17802672 + URR1A DNA MER1_type 59 226 0 6 1378 821 283 47 34 chr11 104041365 104041687 -17802169 + Tigger13a DNA MER2_type 185 510 -261 6 1378 471 352 109 6 chr11 104041913 104042233 -17801623 - MLT1A0 LTR MaLR -10 355 3 6 1378 564 56 0 0 chr11 104042311 104042383 -17801473 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1378 415 287 19 0 chr11 104042478 104042586 -17801270 - PB1D10 SINE Alu -7 110 1 6 1378 5369 65 16 6 chr11 104042776 104043475 -17800381 - L1_Mus3 LINE L1 0 6638 5933 7 1378 634 255 14 7 chr11 104043509 104043651 -17800205 - RSINE1 SINE B4 -21 144 2 7 1378 459 0 0 0 chr11 104043745 104043796 -17800060 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1378 676 277 72 6 chr11 104043804 104044069 -17799787 - ORR1D1 LTR MaLR -15 344 47 7 1378 228 321 24 47 chr11 104044084 104044169 -17799687 + B1F2 SINE Alu 1 83 -66 7 1378 605 281 186 20 chr11 104044216 104044463 -17799393 - B4A SINE B4 0 292 5 7 1378 255 266 34 76 chr11 104044804 104044922 -17798934 - L2c LINE L2 0 3387 3275 7 1378 252 314 29 0 chr11 104045117 104045187 -17798669 + ID4_ SINE ID 2 73 -10 7 1378 631 250 110 73 chr11 104046282 104046554 -17797302 + B4A SINE B4 1 282 -10 7 1378 971 209 136 4 chr11 104046596 104046831 -17797025 - MTD LTR MaLR 0 419 154 7 1378 606 126 10 10 chr11 104046825 104046929 -17796927 + B1_Mur2 SINE Alu 30 133 -16 8 1378 2334 140 127 15 chr11 104046930 104047393 -17796463 + RMER21B LTR ERV1 2 516 -326 8 1378 249 33 0 0 chr11 104047725 104047755 -17796101 + (TCC)n Simple_repeat Simple_repeat 2 31 0 8 1378 200 317 61 0 chr11 104049941 104050023 -17793833 - MIRb SINE MIR -93 175 89 8 1378 813 114 0 0 chr11 104051087 104051210 -17792646 + (GGGA)n Simple_repeat Simple_repeat 4 126 0 8 1378 366 125 0 45 chr11 104052842 104052909 -17790947 - URR1B DNA MER1_type 0 225 162 8 1378 2325 144 83 20 chr11 104052909 104053305 -17790551 + MTC LTR MaLR 1 421 0 8 1378 6221 146 49 39 chr11 104053305 104054495 -17789361 + MTC-int LTR MaLR 1 1226 -32 8 1378 707 134 367 6 chr11 104054495 104054653 -17789203 + B3 SINE B2 2 216 0 8 1378 6221 146 49 39 chr11 104054653 104054707 -17789149 + MTC-int LTR MaLR 1227 1258 0 8 1378 2235 138 74 41 chr11 104054707 104055101 -17788755 + MTC LTR MaLR 1 407 0 8 1378 978 170 6 0 chr11 104055114 104055279 -17788577 - URR1B DNA MER1_type -56 169 4 8 1378 333 0 0 0 chr11 104055685 104055722 -17788134 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1378 339 319 6 19 chr11 104055764 104055924 -17787932 + (CA)n Simple_repeat Simple_repeat 1 158 0 8 1378 480 35 0 0 chr11 104056425 104056483 -17787373 + (TTA)n Simple_repeat Simple_repeat 3 60 0 8 1378 1110 50 43 7 chr11 104056494 104056635 -17787221 - B1_Mus1 SINE Alu -1 147 2 9 1378 191 380 50 0 chr11 104056979 104057079 -17786777 + MIRb SINE MIR 64 168 -100 9 1378 455 248 30 0 chr11 104057742 104057843 -17786013 - PB1D7 SINE Alu -10 110 7 9 1378 270 353 20 0 chr11 104057756 104057858 -17785998 - ID_B1 SINE B4 -50 174 71 9 1378 326 279 85 7 chr11 104058094 104058235 -17785621 - L1M3 LINE L1 -712 5456 5305 9 1378 702 240 113 42 chr11 104058613 104058896 -17784960 + L1MA6 LINE L1 5992 6294 -6 9 1378 952 155 0 7 chr11 104058906 104059055 -17784801 + B1_Mur1 SINE Alu 1 148 -1 9 1378 283 208 42 0 chr11 104059468 104059540 -17784316 + CT-rich Low_complexity Low_complexity 2 76 0 9 1378 787 202 123 21 chr11 104059541 104059728 -17784128 - ID_B1 SINE B4 -17 207 2 9 1378 293 245 57 113 chr11 104059747 104059871 -17783985 - AluG_3 SINE Alu -91 220 1 9 1378 460 284 0 0 chr11 104059898 104060014 -17783842 + PB1D10 SINE Alu 2 117 0 1 1378 210 71 0 0 chr11 104060122 104060150 -17783706 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1 1378 3246 41 3 0 chr11 104060173 104060560 -17783296 + L1Md_F2 LINE L1 6195 6582 0 1 1378 3006 132 7 7 chr11 104060967 104061418 -17782438 + RLTR20B2 LTR ERVK 1 451 -109 1 1378 252 0 0 0 chr11 104061428 104061456 -17782400 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1378 360 0 0 0 chr11 104061456 104061495 -17782361 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1378 496 188 12 21 chr11 104061919 104062038 -17781818 + RMER20A LTR ERVK 1 157 -359 1 1378 749 231 68 105 chr11 104062035 104062330 -17781526 + RMER13A LTR ERVK 183 466 -394 1 1378 1236 35 0 20 chr11 104062599 104062747 -17781109 + B1_Mm SINE Alu 3 147 0 1 1378 3074 152 130 15 chr11 104062873 104063162 -17780694 - RMER6C LTR ERVK -5 685 330 1 1378 198 0 0 0 chr11 104063162 104063184 -17780672 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1378 3074 152 130 15 chr11 104063184 104063508 -17780348 - RMER6C LTR ERVK -361 329 2 1 1378 364 309 106 55 chr11 104063508 104063699 -17780157 + MLT1E LTR MaLR 78 278 -376 1 1378 742 271 12 6 chr11 104063682 104063842 -17780014 + B3 SINE B2 7 167 -49 1 1378 3188 121 23 4 chr11 104063863 104064336 -17779520 - RLTR1C LTR ERV1 -21 482 1 1 1378 454 291 20 0 chr11 104064382 104064515 -17779341 + MLT1E LTR MaLR 458 595 -59 1 1378 344 235 224 9 chr11 104065133 104065249 -17778607 - B1F SINE Alu -6 143 3 1 1378 378 312 62 38 chr11 104065260 104065420 -17778436 + RSINE1 SINE B4 2 165 0 1 1378 21 36 0 0 chr11 104065425 104065453 -17778403 + AT_rich Low_complexity Low_complexity 1 28 0 1 1378 644 238 157 11 chr11 104065583 104065774 -17778082 - ID_B1 SINE B4 -5 219 1 1 1378 382 250 0 11 chr11 104066273 104066362 -17777494 - MLT1A LTR MaLR -7 367 280 1 1378 216 0 0 0 chr11 104066384 104066408 -17777448 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1378 1277 35 0 0 chr11 104066408 104066553 -17777303 - B1_Mm SINE Alu -2 145 1 1 1378 569 188 171 0 chr11 104066959 104067076 -17776780 - B1_Mur1 SINE Alu 0 149 13 1 1378 310 212 232 0 chr11 104067145 104067244 -17776612 - MLT1D LTR MaLR -43 462 341 1 1378 628 225 39 0 chr11 104067414 104067543 -17776313 + B3A SINE B2 6 139 -59 1 1378 628 262 34 45 chr11 104067538 104067714 -17776142 - ID_B1 SINE B4 -48 176 3 1 1378 271 297 89 0 chr11 104067752 104067853 -17776003 - MLT1A LTR MaLR -347 158 49 1 1378 180 314 0 0 chr11 104068592 104068643 -17775213 + MIRc SINE MIR 48 98 -170 1 1378 293 229 41 33 chr11 104068655 104068777 -17775079 + L1M LINE L1 5271 5393 -966 1 1378 777 135 0 0 chr11 104068955 104069081 -17774775 + (TTCC)n Simple_repeat Simple_repeat 4 129 0 1 1378 253 268 81 47 chr11 104069103 104069189 -17774667 - B1F SINE Alu -45 104 16 1 1378 735 243 0 0 chr11 104069244 104069388 -17774468 - B1_Mur1 SINE Alu 0 149 6 1 1378 470 153 0 0 chr11 104069940 104070012 -17773844 + B3 SINE B2 2 73 -143 1 1378 286 233 68 14 chr11 104069974 104070048 -17773808 - ORR1B1 LTR MaLR -45 349 272 1 1378 467 228 0 0 chr11 104070043 104070135 -17773721 + B1_Mur1 SINE Alu 51 142 -7 1 1378 1380 161 183 30 chr11 104070254 104070302 -17773554 - ORR1B1 LTR MaLR 0 394 347 1 1378 216 0 0 0 chr11 104070302 104070326 -17773530 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1378 1380 174 157 29 chr11 104070326 104070664 -17773192 - ORR1B1 LTR MaLR -48 346 1 1 1378 198 0 0 0 chr11 104070704 104070726 -17773130 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1378 900 271 71 4 chr11 104070726 104070978 -17772878 - B4A SINE B4 -23 269 1 1 1379 525 262 123 32 chr11 104071930 104072182 -17771674 + B4A SINE B4 2 276 -16 1 1379 977 148 0 7 chr11 104072961 104073111 -17770745 + B1_Mur2 SINE Alu 1 149 0 1 1379 324 307 150 40 chr11 104073428 104073601 -17770255 - ID_B1 SINE B4 -17 207 16 1 1379 1896 186 42 12 chr11 104073675 104074012 -17769844 + MTD LTR MaLR 1 347 -72 1 1379 617 266 22 0 chr11 104074020 104074159 -17769697 + B1F SINE Alu 1 142 -7 1 1379 947 242 38 19 chr11 104074161 104074372 -17769484 + ID_B1 SINE B4 1 215 -9 1 1379 2578 56 3 58 chr11 104074383 104074725 -17769131 + ORR1A2 LTR MaLR 5 327 0 1 1379 297 51 0 0 chr11 104074802 104074841 -17769015 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1379 531 217 126 75 chr11 104075289 104075488 -17768368 + ID_B1 SINE B4 12 220 -4 1 1379 873 248 9 38 chr11 104075516 104075710 -17768146 + B3A SINE B2 8 197 -1 1 1379 1263 35 0 0 chr11 104075710 104075852 -17768004 + B1_Mus2 SINE Alu 1 142 -5 1 1379 770 248 9 38 chr11 104075852 104075867 -17767989 + B3 SINE B2 197 211 -5 1 1379 278 250 67 134 chr11 104076014 104076148 -17767708 + RMER30 DNA MER1_type 78 202 0 1 1379 843 207 125 21 chr11 104076866 104077038 -17766818 - ID_B1 SINE B4 -9 215 23 1 1379 1354 77 16 27 chr11 104077038 104077225 -17766631 - B2_Mm2 SINE B2 -9 186 2 1 1379 843 207 125 21 chr11 104077225 104077244 -17766612 - ID SINE ID -202 22 4 1 1379 459 280 100 33 chr11 104077257 104077497 -17766359 - L1MC1 LINE L1 -2 6331 6076 1 1379 622 247 54 36 chr11 104077508 104077676 -17766180 - MTEb LTR MaLR 0 379 209 1 1379 495 205 52 59 chr11 104077679 104077814 -17766042 + B4 SINE B4 159 292 0 1 1379 492 234 21 11 chr11 104077966 104078061 -17765795 - PB1D10 SINE Alu -21 96 1 1 1379 565 258 0 29 chr11 104078320 104078456 -17765400 + ID_B1 SINE B4 93 224 0 1 1379 207 0 0 0 chr11 104078888 104078911 -17764945 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1379 346 209 15 139 chr11 104079009 104079151 -17764705 - B1_Mm SINE Alu -9 140 12 1 1379 416 282 27 18 chr11 104079807 104079919 -17763937 + PB1D10 SINE Alu 3 115 -2 1 1379 325 269 84 6 chr11 104080321 104080427 -17763429 + PB1D10 SINE Alu 5 118 -31 1 1379 648 241 45 124 chr11 104080522 104080764 -17763092 - MTEa LTR MaLR -24 355 133 1 1379 495 0 0 0 chr11 104080884 104080939 -17762917 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1379 550 211 0 147 chr11 104080940 104081036 -17762820 - RSINE1 SINE B4 -22 143 49 1 1379 1204 48 7 7 chr11 104081036 104081184 -17762672 + B1_Mus1 SINE Alu 1 148 0 1 1379 550 211 0 147 chr11 104081184 104081243 -17762613 - RSINE1 SINE B4 -117 48 11 1 1379 368 337 92 52 chr11 104081534 104082054 -17761802 - ERVL-E-int LTR ERVL -2217 3450 2910 1 1379 864 333 11 7 chr11 104082318 104082593 -17761263 + B4A SINE B4 1 276 -16 1 1379 378 61 0 0 chr11 104082646 104082695 -17761161 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1379 216 0 0 0 chr11 104082695 104082719 -17761137 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1379 318 26 0 0 chr11 104082722 104082761 -17761095 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1379 378 0 0 0 chr11 104082900 104082942 -17760914 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1379 850 286 10 35 chr11 104082942 104083133 -17760723 - B4A SINE B4 -6 286 98 1 1379 251 323 96 59 chr11 104083012 104083147 -17760709 - B1_Mus1 SINE Alu -8 140 1 1 1379 2292 123 19 8 chr11 104083146 104083500 -17760356 + ORR1B1 LTR MaLR 1 358 -36 1 1379 767 139 66 0 chr11 104083500 104083622 -17760234 + B3 SINE B2 1 130 -86 1 1379 432 0 0 0 chr11 104083659 104083707 -17760149 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1 1379 365 115 0 0 chr11 104083715 104083767 -17760089 + ORR1B1 LTR MaLR 340 391 -3 1 1379 307 250 16 0 chr11 104083770 104083834 -17760022 - B4A SINE B4 -201 91 27 1 1379 499 273 29 7 chr11 104083946 104084086 -17759770 - B1F1 SINE Alu -2 147 5 1 1379 903 249 74 26 chr11 104084241 104084472 -17759384 + B4A SINE B4 2 243 -49 1 1379 272 27 27 0 chr11 104084505 104084542 -17759314 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1379 457 311 48 21 chr11 104084841 104085028 -17758828 - LTR41B LTR ERVL -555 203 12 1 1379 521 260 19 7 chr11 104085037 104085167 -17758689 + B1F2 SINE Alu 1 128 -20 1 1379 23 0 0 0 chr11 104085471 104085494 -17758362 + GC_rich Low_complexity Low_complexity 1 23 0 1 1379 213 121 0 0 chr11 104085631 104085664 -17758192 + (CGTG)n Simple_repeat Simple_repeat 3 35 0 1 1379 2518 116 50 14 chr11 104085758 104086178 -17757678 - ORR1B1 LTR MaLR -8 386 1 1 1379 665 232 7 21 chr11 104086270 104086415 -17757441 - ID_B1 SINE B4 -1 223 81 1 1379 507 211 228 6 chr11 104086662 104086824 -17757032 + B3A SINE B2 1 198 0 1 1379 261 277 0 0 chr11 104087071 104087136 -17756720 - HERV16-int LTR ERVL -4354 642 578 1 1379 737 245 39 44 chr11 104087722 104087927 -17755929 - ID_B1 SINE B4 0 224 21 1 1379 758 249 27 27 chr11 104088045 104088231 -17755625 - B3 SINE B2 0 216 31 1 1379 325 274 98 0 chr11 104088249 104088351 -17755505 + Charlie4a DNA MER1_type 394 505 -3 1 1379 1235 88 47 0 chr11 104088411 104088581 -17755275 + B2_Mm1t SINE B2 2 179 -14 1 1379 448 142 183 17 chr11 104088594 104088709 -17755147 + B2_Mm2 SINE B2 47 180 -15 1 1379 896 108 7 0 chr11 104088709 104088848 -17755008 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 1 1379 1243 54 0 0 chr11 104089081 104089228 -17754628 - B1_Mus2 SINE Alu 0 147 1 1 1379 908 147 40 20 chr11 104091037 104091219 -17752637 + B2_Mm2 SINE B2 15 195 0 1 1379 744 93 1 0 chr11 104091334 104091450 -17752406 + B2_Mm2 SINE B2 1 117 -99 1 1379 180 0 0 0 chr11 104091452 104091472 -17752384 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 1 1379 477 245 131 9 chr11 104091491 104091598 -17752258 - B1F SINE Alu -28 121 2 1 1379 655 170 9 26 chr11 104091628 104091743 -17752113 + PB1D9 SINE Alu 2 114 -6 1 1379 204 267 17 0 chr11 104092797 104092889 -17750967 + (CCG)n Simple_repeat Simple_repeat 1 93 0 1 1379 260 240 118 13 chr11 104097424 104097500 -17746356 + MER20 DNA MER1_type 79 162 -57 1 1379 218 351 53 0 chr11 104097620 104097714 -17746142 - MIRm SINE MIR -97 179 81 2 1379 459 370 11 40 chr11 104098057 104098234 -17745622 + B4A SINE B4 24 195 -97 2 1379 244 228 18 0 chr11 104098245 104098302 -17745554 + GA-rich Low_complexity Low_complexity 4 61 0 2 1379 21 0 0 0 chr11 104099162 104099183 -17744673 + AT_rich Low_complexity Low_complexity 1 21 0 2 1379 198 143 0 0 chr11 104099574 104099609 -17744247 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 2 1379 775 217 44 82 chr11 104099997 104100203 -17743653 - B3A SINE B2 0 198 1 2 1379 455 0 18 0 chr11 104100221 104100276 -17743580 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1379 244 189 0 54 chr11 104100284 104100324 -17743532 - RLTR11A2 LTR ERVK 0 527 488 2 1379 4481 18 0 0 chr11 104100324 104100817 -17743039 - MT2_Mm LTR ERVL 0 493 1 2 1379 244 189 0 54 chr11 104100817 104100832 -17743024 - RLTR11A2 LTR ERVK -40 487 475 2 1379 399 167 46 35 chr11 104100855 104100942 -17742914 - ORR1A3-int LTR MaLR -1323 640 553 2 1379 19237 24 1 0 chr11 104100942 104103194 -17740662 - MERVL-int LTR ERVL -125 5360 3107 2 1379 2463 17 0 0 chr11 104103177 104103465 -17740391 - MERVL-int LTR ERVL -5197 288 1 2 1379 4481 18 0 0 chr11 104103465 104103958 -17739898 - MT2_Mm LTR ERVL 0 493 1 2 1379 2476 140 92 18 chr11 104103958 104104416 -17739440 - RLTR11A2 LTR ERVK -35 492 1 2 1379 523 259 98 0 chr11 104104419 104104562 -17739294 - RSINE1 SINE B4 -6 159 3 2 1379 261 280 12 62 chr11 104104642 104104722 -17739134 - B4A SINE B4 -1 291 216 2 1379 22 0 0 0 chr11 104104722 104104744 -17739112 + AT_rich Low_complexity Low_complexity 1 22 0 2 1379 1317 155 14 23 chr11 104104745 104104963 -17738893 - B3 SINE B2 0 216 1 2 1379 354 320 31 39 chr11 104104966 104105093 -17738763 - B4A SINE B4 -68 224 99 2 1379 444 277 11 0 chr11 104105135 104105229 -17738627 + B4A SINE B4 8 102 -190 2 1379 669 170 0 0 chr11 104106192 104106420 -17737436 + (TG)n Simple_repeat Simple_repeat 1 228 0 2 1379 586 289 127 28 chr11 104106441 104106513 -17737343 - B4A SINE B4 -8 284 213 2 1379 969 203 43 14 chr11 104106513 104106723 -17737133 - B3 SINE B2 0 216 1 2 1379 586 289 127 28 chr11 104106723 104106781 -17737075 - B4A SINE B4 -80 212 137 2 1379 360 59 0 0 chr11 104106781 104106832 -17737024 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2 1379 423 0 0 0 chr11 104106834 104106881 -17736975 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1379 586 289 127 28 chr11 104106881 104106999 -17736857 - B4A SINE B4 -156 136 10 2 1379 1217 41 0 40 chr11 104107029 104107181 -17736675 - B1_Mus2 SINE Alu 0 147 2 2 1379 242 183 217 0 chr11 104109125 104109185 -17734671 - ID4_ SINE ID -8 75 3 2 1379 1456 65 32 0 chr11 104109499 104109685 -17734171 + B2_Mm2 SINE B2 2 193 -2 2 1379 720 204 14 19 chr11 104110278 104110425 -17733431 - B1F SINE Alu -2 147 5 2 1379 720 167 71 35 chr11 104111247 104111425 -17732431 + B2_Mm2 SINE B2 2 192 -1 2 1379 663 156 0 9 chr11 104111838 104111948 -17731908 + PB1D9 SINE Alu 5 113 -7 2 1379 1011 74 0 7 chr11 104112015 104112151 -17731705 - B1_Mus1 SINE Alu -12 136 2 2 1379 198 0 0 0 chr11 104112165 104112187 -17731669 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1379 28 48 0 0 chr11 104112191 104112233 -17731623 + AT_rich Low_complexity Low_complexity 1 42 0 2 1379 342 0 0 0 chr11 104113327 104113365 -17730491 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1379 395 145 14 0 chr11 104113390 104113459 -17730397 - B1_Mus2 SINE Alu -1 146 77 2 1379 865 261 5 0 chr11 104113649 104113844 -17730012 + B3 SINE B2 2 197 -19 2 1379 351 0 0 0 chr11 104113847 104113886 -17729970 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 2 1379 441 184 219 65 chr11 104113931 104114100 -17729756 + B3A SINE B2 2 196 -2 2 1379 288 0 0 0 chr11 104114148 104114180 -17729676 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2 1379 306 327 40 0 chr11 104114881 104114982 -17728874 + PB1D10 SINE Alu 7 111 -6 2 1379 910 143 0 26 chr11 104115215 104115366 -17728490 + B1_Mur3 SINE Alu 1 147 -2 2 1379 824 217 33 0 chr11 104117051 104117235 -17726621 - B3 SINE B2 0 216 27 2 1379 199 0 31 31 chr11 104117244 104117276 -17726580 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1379 1165 41 7 0 chr11 104117279 104117425 -17726431 - B1_Mm SINE Alu 0 147 1 2 1379 426 224 55 18 chr11 104117461 104117570 -17726286 - PB1D10 SINE Alu -2 115 3 2 1379 246 128 0 0 chr11 104117911 104117950 -17725906 + (TCC)n Simple_repeat Simple_repeat 1 39 0 2 1379 841 112 8 0 chr11 104117950 104118075 -17725781 - B1_Mus1 SINE Alu 0 148 23 2 1379 435 291 66 22 chr11 104118268 104118405 -17725451 + RSINE1 SINE B4 3 145 -20 2 1379 315 0 0 0 chr11 104118408 104118443 -17725413 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1379 406 229 0 163 chr11 104118499 104118640 -17725216 + B1F1 SINE Alu 13 130 -19 2 1379 399 21 0 0 chr11 104118645 104118693 -17725163 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1379 194 57 0 54 chr11 104119462 104119499 -17724357 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1379 1174 48 0 0 chr11 104119511 104119658 -17724198 - B1_Mus2 SINE Alu 0 147 1 2 1379 292 333 81 8 chr11 104119828 104119952 -17723904 + MIR SINE MIR 17 149 -113 2 1379 2599 75 72 8 chr11 104120653 104121029 -17722827 - MTB LTR MaLR 0 400 1 2 1379 6449 91 27 90 chr11 104121032 104121835 -17722021 - MTB-int LTR MaLR -3 1095 390 2 1379 1370 83 5 0 chr11 104121835 104122027 -17721829 - B2_Mm1t SINE B2 0 193 1 2 1379 6449 91 27 90 chr11 104122027 104122391 -17721465 - MTB-int LTR MaLR -709 389 1 2 1379 2452 71 6 6 chr11 104122393 104122720 -17721136 - MTB LTR MaLR 0 327 1 2 1379 314 274 16 41 chr11 104123275 104123397 -17720459 + L1M5 LINE L1 5570 5688 -436 2 1379 457 213 0 0 chr11 104123403 104123497 -17720359 + PB1D10 SINE Alu 18 111 -6 2 1379 951 128 30 0 chr11 104123587 104123751 -17720105 - URR1A DNA MER1_type 0 226 58 2 1379 691 99 349 8 chr11 104123833 104123965 -17719891 - B2_Mm2 SINE B2 -18 177 1 2 1379 726 226 58 18 chr11 104123987 104124158 -17719698 - B3 SINE B2 -37 179 2 2 1379 586 168 17 26 chr11 104124192 104124308 -17719548 + PB1D10 SINE Alu 2 116 -1 2 1379 186 133 0 0 chr11 104124308 104124338 -17719518 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 2 1379 1064 72 0 0 chr11 104124428 104124566 -17719290 + B1_Mus2 SINE Alu 1 138 -9 2 1379 261 0 0 0 chr11 104124566 104124595 -17719261 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1379 357 257 28 65 chr11 104124659 104124767 -17719089 + PB1 SINE Alu 13 116 -11 2 1379 332 242 20 31 chr11 104124825 104124923 -17718933 + PB1D10 SINE Alu 21 117 0 2 1379 765 291 37 26 chr11 104125122 104125390 -17718466 + B4A SINE B4 6 276 -16 2 1379 357 62 0 0 chr11 104125396 104125444 -17718412 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2 1379 917 129 7 0 chr11 104125479 104125618 -17718238 - B1_Mur3 SINE Alu -8 141 2 2 1379 1387 88 16 0 chr11 104126378 104126570 -17717286 - B2_Mm2 SINE B2 0 195 1 2 1379 508 239 35 99 chr11 104126647 104126819 -17717037 + RSINE1 SINE B4 3 163 -2 2 1379 243 0 0 0 chr11 104126969 104126996 -17716860 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1379 320 215 11 102 chr11 104126996 104127074 -17716782 - ID4_ SINE ID -11 72 2 2 1379 487 235 8 40 chr11 104127084 104127208 -17716648 - ID_B1 SINE B4 -3 221 102 2 1379 701 251 6 12 chr11 104127822 104127983 -17715873 + RSINE1 SINE B4 2 161 -4 2 1379 366 80 0 0 chr11 104128031 104128081 -17715775 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 2 1379 551 99 22 0 chr11 104128081 104128171 -17715685 + (CATA)n Simple_repeat Simple_repeat 2 94 0 2 1379 335 299 31 0 chr11 104128204 104128301 -17715555 - MIRc SINE MIR -126 142 43 2 1379 21 0 0 0 chr11 104128326 104128347 -17715509 + AT_rich Low_complexity Low_complexity 1 21 0 2 1379 24 0 0 0 chr11 104128400 104128424 -17715432 + AT_rich Low_complexity Low_complexity 1 24 0 2 1379 514 208 146 0 chr11 104128445 104128575 -17715281 + B1_Mur3 SINE Alu 1 149 0 2 1379 213 39 0 0 chr11 104129288 104129314 -17714542 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1379 519 165 32 80 chr11 104129348 104129473 -17714383 + PB1D9 SINE Alu 2 120 0 2 1379 478 264 0 0 chr11 104129514 104129620 -17714236 + B1F2 SINE Alu 6 111 -38 2 1379 416 250 0 83 chr11 104129699 104129799 -17714057 + PB1D10 SINE Alu 18 109 -8 2 1379 429 198 25 0 chr11 104129799 104129880 -17713976 + ID4 SINE ID 1 83 0 2 1379 887 140 34 20 chr11 104129972 104130118 -17713738 - B1_Mur3 SINE Alu -1 148 1 2 1379 313 226 71 12 chr11 104130120 104130205 -17713651 - PB1D7 SINE Alu -1 119 30 2 1379 520 322 56 6 chr11 104130206 104130384 -17713472 - ID_B1 SINE B4 -35 189 3 2 1379 423 0 0 0 chr11 104130395 104130442 -17713414 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1379 535 261 75 13 chr11 104130444 104130603 -17713253 + B3 SINE B2 7 175 -41 2 1379 504 231 33 59 chr11 104132487 104132639 -17711217 - B1_Mur1 SINE Alu 0 149 2 2 1379 458 287 9 9 chr11 104132691 104132807 -17711049 - PB1D10 SINE Alu -1 116 1 2 1379 276 365 0 34 chr11 104132708 104132827 -17711029 - ID_B1 SINE B4 -45 179 65 2 1379 354 374 0 7 chr11 104132899 104133047 -17710809 + (CA)n Simple_repeat Simple_repeat 2 148 0 2 1379 369 224 61 71 chr11 104134232 104134373 -17709483 - MIRb SINE MIR -106 162 15 2 1379 367 253 110 0 chr11 104134408 104134499 -17709357 + PB1D10 SINE Alu 1 101 -16 2 1379 1338 59 26 11 chr11 104135194 104135383 -17708473 - B2_Mm2 SINE B2 -3 192 1 2 1379 402 266 167 25 chr11 104136012 104136253 -17707603 + B4A SINE B4 2 280 -12 2 1379 576 209 9 0 chr11 104136412 104136522 -17707334 + PB1D10 SINE Alu 1 111 -6 2 1379 327 85 0 0 chr11 104136749 104136796 -17707060 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1379 366 299 56 35 chr11 104136845 104136869 -17706987 - B4 SINE B4 -66 226 86 2 1379 596 153 0 6 chr11 104136869 104136983 -17706873 - PB1D9 SINE Alu -10 110 1 3 1379 342 238 42 55 chr11 104137069 104137200 -17706656 + PB1D10 SINE Alu 1 120 0 3 1379 249 212 157 57 chr11 104137919 104137953 -17705903 - ID_B1 SINE B4 -40 184 152 3 1379 2738 34 44 110 chr11 104137953 104138010 -17705846 - MTB LTR MaLR 0 400 346 3 1379 1150 48 7 0 chr11 104138010 104138156 -17705700 + B1_Mm SINE Alu 1 147 0 3 1379 2738 34 44 110 chr11 104138156 104138526 -17705330 - MTB LTR MaLR -55 345 1 3 1379 249 212 157 57 chr11 104138526 104138561 -17705295 - ID_B1 SINE B4 -73 151 108 3 1379 755 245 122 5 chr11 104138818 104139007 -17704849 - B3 SINE B2 -4 212 2 3 1379 859 123 13 27 chr11 104139014 104139164 -17704692 - B1_Mus1 SINE Alu 0 148 1 3 1379 454 223 24 35 chr11 104139360 104139498 -17704358 - PB1D9 SINE Alu -6 143 1 3 1379 299 289 144 7 chr11 104139940 104140093 -17703763 + MIRb SINE MIR 6 179 -89 3 1379 202 200 0 24 chr11 104141228 104141269 -17702587 + CT-rich Low_complexity Low_complexity 4 43 0 3 1379 299 254 0 0 chr11 104141272 104141339 -17702517 - ID4 SINE ID -13 70 4 3 1379 393 256 0 22 chr11 104141904 104141996 -17701860 + 5S rRNA rRNA 1 90 -31 3 1379 317 336 16 39 chr11 104141913 104142040 -17701816 + AmnSINE1 SINE SINE 10 133 -442 3 1379 1291 108 0 5 chr11 104142054 104142250 -17701606 - B2_Mm2 SINE B2 0 195 1 3 1379 22 0 0 0 chr11 104142262 104142284 -17701572 + AT_rich Low_complexity Low_complexity 1 22 0 3 1379 655 224 33 22 chr11 104142305 104142489 -17701367 + B3 SINE B2 9 195 0 3 1379 259 229 68 13 chr11 104142511 104142587 -17701269 + PB1D10 SINE Alu 13 93 -27 3 1379 434 222 22 0 chr11 104142598 104142688 -17701168 + B4A SINE B4 2 93 -199 3 1379 608 259 0 0 chr11 104144123 104144258 -17699598 + B1F2 SINE Alu 6 140 -9 3 1379 300 93 0 0 chr11 104144266 104144309 -17699547 + B3A SINE B2 2 44 -154 3 1379 1008 70 0 40 chr11 104144321 104144469 -17699387 + B1_Mus2 SINE Alu 6 147 0 3 1379 377 286 108 25 chr11 104144487 104144645 -17699211 + B3A SINE B2 27 197 -1 3 1379 1238 32 0 0 chr11 104144649 104144804 -17699052 + B2_Mm1a SINE B2 1 155 -38 3 1379 261 0 0 0 chr11 104144805 104144834 -17699022 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 1379 1172 41 7 0 chr11 104144875 104145021 -17698835 - B1_Mus1 SINE Alu -1 147 1 3 1379 975 68 0 20 chr11 104145029 104145180 -17698676 - L1Md_F2 LINE L1 -1 6581 6434 3 1379 279 0 0 0 chr11 104145332 104145363 -17698493 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1379 279 0 0 0 chr11 104145387 104145418 -17698438 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1379 738 34 0 0 chr11 104145418 104145507 -17698349 + (GA)n Simple_repeat Simple_repeat 1 89 0 3 1379 465 19 0 0 chr11 104146415 104146469 -17697387 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 3 1379 649 189 24 0 chr11 104146471 104146598 -17697258 - B1_Mm SINE Alu -13 134 5 3 1379 1890 119 91 15 chr11 104146930 104147271 -17696585 - ORR1B2 LTR MaLR 0 367 1 3 1379 1590 121 98 92 chr11 104147480 104147807 -17696049 - ORR1A4 LTR MaLR 0 329 1 3 1379 881 146 0 0 chr11 104148127 104148264 -17695592 + B1_Mur4 SINE Alu 3 139 -11 3 1379 496 269 7 39 chr11 104149379 104149534 -17694322 + RSINE1 SINE B4 4 153 -12 3 1379 1019 88 7 0 chr11 104149572 104149719 -17694137 + B1_Mus1 SINE Alu 1 148 0 3 1379 314 255 57 22 chr11 104149720 104149843 -17694013 + L1M5 LINE L1 3117 3246 -2900 3 1379 1356 215 91 20 chr11 104152016 104152367 -17691489 - MTEa LTR MaLR 0 379 4 3 1379 1166 123 16 0 chr11 104152637 104152824 -17691032 - B2_Mm2 SINE B2 0 195 6 3 1379 723 294 78 55 chr11 104153228 104153574 -17690282 - MTEa LTR MaLR -25 354 1 3 1379 439 306 8 24 chr11 104153968 104153984 -17689872 + ID_B1 SINE B4 83 207 -17 3 1379 490 243 36 0 chr11 104153984 104154095 -17689761 + B1F SINE Alu 18 132 -17 3 1379 185 35 0 65 chr11 104155059 104155090 -17688766 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1379 1053 62 7 0 chr11 104155092 104155237 -17688619 - B1_Mm SINE Alu -1 146 1 3 1379 476 251 59 81 chr11 104155237 104155279 -17688577 - B4A SINE B4 -212 80 43 3 1379 1259 90 31 41 chr11 104155403 104155599 -17688257 - B2_Mm2 SINE B2 -1 194 1 3 1379 28 0 0 0 chr11 104156630 104156658 -17687198 + AT_rich Low_complexity Low_complexity 1 28 0 3 1379 596 255 82 19 chr11 104157034 104157242 -17686614 - ID_B1 SINE B4 -3 221 1 3 1379 715 133 0 15 chr11 104157495 104157607 -17686249 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 3 1379 1123 62 0 0 chr11 104157607 104157753 -17686103 - B1_Mus2 SINE Alu 0 147 2 3 1379 715 133 0 15 chr11 104157753 104157777 -17686079 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 3 1379 585 92 208 40 chr11 104157799 104157924 -17685932 - B1_Mus1 SINE Alu -1 147 2 3 1379 488 210 134 0 chr11 104158499 104158618 -17685238 + ID_B1 SINE B4 88 222 -2 3 1379 338 196 17 10 chr11 104159246 104159324 -17684532 - MIR3 SINE MIR -32 176 107 3 1379 352 323 34 32 chr11 104160933 104161127 -17682729 - MIRb SINE MIR -79 197 3 3 1379 995 31 0 0 chr11 104161265 104161392 -17682464 - B1_Mm SINE Alu -20 127 1 3 1379 380 253 20 25 chr11 104161572 104161698 -17682158 + RSINE1 SINE B4 10 133 -159 3 1379 216 329 42 14 chr11 104161689 104161760 -17682096 + RSINE1 SINE B4 92 164 -1 3 1379 627 237 7 15 chr11 104161943 104162080 -17681776 + B1F SINE Alu 9 144 -5 3 1379 326 206 72 36 chr11 104162081 104162192 -17681664 + PB1D10 SINE Alu 3 117 0 3 1379 1233 82 0 0 chr11 104164350 104164521 -17679335 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 3 1379 899 77 0 23 chr11 104165412 104165545 -17678311 - B1_Mus1 SINE Alu -1 147 18 3 1379 408 257 0 0 chr11 104165795 104165935 -17677921 + (TG)n Simple_repeat Simple_repeat 2 141 0 3 1379 535 246 65 29 chr11 104166927 104167065 -17676791 + B1F SINE Alu 1 143 -6 3 1379 294 348 35 0 chr11 104167075 104167190 -17676666 + PB1D9 SINE Alu 1 119 -1 3 1379 360 0 0 0 chr11 104168847 104168887 -17674969 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1379 818 146 23 23 chr11 104169615 104169667 -17674189 + B1_Mus1 SINE Alu 4 56 -92 3 1379 1255 99 10 35 chr11 104169667 104169865 -17673991 + B2_Mm1t SINE B2 1 193 0 3 1379 818 146 23 23 chr11 104169865 104169945 -17673911 + B1_Mus1 SINE Alu 57 136 -12 3 1379 402 21 0 0 chr11 104169946 104169993 -17673863 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1379 796 80 0 66 chr11 104170001 104170122 -17673734 + B1_Mus2 SINE Alu 25 137 -10 3 1379 303 274 104 10 chr11 104170141 104170237 -17673619 - PB1 SINE Alu -12 115 11 3 1379 627 211 156 1 chr11 104170328 104170495 -17673361 - B3 SINE B2 -13 182 1 3 1379 419 266 140 12 chr11 104172293 104172464 -17671392 - MLT1B LTR MaLR -168 222 30 3 1379 596 244 81 49 chr11 104173812 104173997 -17669859 + ID_B1 SINE B4 2 192 -32 3 1379 1658 32 0 0 chr11 104174026 104174215 -17669641 - B2_Mm1a SINE B2 -3 190 2 3 1379 487 203 151 8 chr11 104174242 104174361 -17669495 + RSINE1 SINE B4 2 137 -28 3 1379 523 247 92 20 chr11 104174385 104174538 -17669318 + B3A SINE B2 2 165 -33 3 1379 267 31 0 0 chr11 104174538 104174570 -17669286 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1379 642 228 39 32 chr11 104174575 104174729 -17669127 + RSINE1 SINE B4 11 165 0 3 1379 268 343 37 90 chr11 104174729 104174764 -17669092 + B2_Mm2 SINE B2 10 188 -7 3 1379 319 258 157 45 chr11 104175625 104175759 -17668097 + B1F2 SINE Alu 1 149 0 3 1379 748 133 8 45 chr11 104175867 104176000 -17667856 - URR1B DNA MER1_type -6 219 92 3 1379 377 41 0 0 chr11 104176000 104176049 -17667807 + B1_Mus2 SINE Alu 1 49 -98 3 1379 216 0 0 0 chr11 104176066 104176090 -17667766 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1379 445 206 17 143 chr11 104176090 104176209 -17667647 - URR1B DNA MER1_type -121 104 1 3 1379 267 340 140 0 chr11 104176291 104176391 -17667465 + PB1D10 SINE Alu 1 114 -3 3 1379 660 26 0 0 chr11 104176554 104176632 -17667224 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 3 1379 286 200 0 0 chr11 104176634 104176681 -17667175 + ID_B1 SINE B4 92 138 -86 3 1379 832 156 13 39 chr11 104176681 104176834 -17667022 + B1_Mur2 SINE Alu 1 149 0 3 1379 1207 62 0 0 chr11 104176854 104177000 -17666856 + B1_Mus2 SINE Alu 2 147 0 3 1379 252 86 0 0 chr11 104177001 104177036 -17666820 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 1379 211 102 61 0 chr11 104177516 104177565 -17666291 + T-rich Low_complexity Low_complexity 4 55 0 3 1379 1167 48 7 20 chr11 104177566 104177715 -17666141 - B1_Mm SINE Alu 0 147 1 3 1379 757 287 18 18 chr11 104177717 104177937 -17665919 - ID_B1 SINE B4 -1 223 4 3 1379 261 313 24 24 chr11 104178710 104178795 -17665061 + L4 LINE RTE 1746 1830 -199 3 1379 248 130 22 0 chr11 104178811 104178857 -17664999 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1379 525 191 11 0 chr11 104178873 104178962 -17664894 + B1_Mur2 SINE Alu 57 146 -3 3 1379 269 228 11 112 chr11 104178883 104178972 -17664884 + ID_B1 SINE B4 145 224 0 3 1379 21 0 0 0 chr11 104180188 104180209 -17663647 + GC_rich Low_complexity Low_complexity 1 21 0 3 1379 216 0 0 0 chr11 104181626 104181650 -17662206 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1379 1020 109 17 62 chr11 104183934 104184110 -17659746 + URR1A DNA MER1_type 48 215 -11 3 1379 457 238 30 107 chr11 104183963 104184132 -17659724 - CYRA11_Mm Unknown Y-chromosome -297 320 165 3 1379 365 0 22 0 chr11 104184371 104184416 -17659440 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1379 601 270 127 62 chr11 104184456 104184607 -17659249 - B4A SINE B4 -14 278 113 4 1379 1606 42 0 5 chr11 104184607 104184798 -17659058 + B2_Mm1t SINE B2 3 192 -1 4 1379 601 270 127 62 chr11 104184798 104184906 -17658950 - B4A SINE B4 -180 112 2 4 1379 255 61 0 0 chr11 104184960 104184993 -17658863 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1379 1174 63 0 0 chr11 104185040 104185183 -17658673 + B1_Mus2 SINE Alu 5 147 0 4 1379 249 33 0 0 chr11 104185183 104185213 -17658643 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1379 4412 108 60 56 chr11 104185456 104185606 -17658250 + RMER6A LTR ERVK 1 150 -606 4 1379 1407 79 11 5 chr11 104185606 104185796 -17658060 - B2_Mm1t SINE B2 -1 192 2 4 1379 4412 108 60 56 chr11 104185796 104185815 -17658041 + RMER6A LTR ERVK 151 151 -605 4 1379 1724 21 0 0 chr11 104185815 104186007 -17657849 - B2_Mm1a SINE B2 0 193 2 4 1379 4412 108 60 56 chr11 104186007 104186589 -17657267 + RMER6A LTR ERVK 151 756 0 4 1379 260 220 0 0 chr11 104186589 104186639 -17657217 + tRNA-Ala-GCY_ tRNA tRNA 18 67 -8 4 1379 215 31 31 0 chr11 104186640 104186672 -17657184 + (TAGA)n Simple_repeat Simple_repeat 3 35 0 4 1379 365 217 169 0 chr11 104187011 104187094 -17656762 + PB1D10 SINE Alu 15 111 -6 4 1379 1201 41 14 0 chr11 104187103 104187248 -17656608 + B1_Mur4 SINE Alu 4 150 0 4 1379 519 238 0 19 chr11 104187299 104187406 -17656450 + RSINE1 SINE B4 6 110 -55 4 1379 228 195 0 0 chr11 104187461 104187502 -17656354 + PB1D9 SINE Alu 1 41 -79 4 1379 3933 112 7 65 chr11 104187503 104187964 -17655892 - RMER6A LTR ERVK 0 756 322 4 1379 354 23 0 0 chr11 104187964 104188007 -17655849 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 1379 1174 29 0 7 chr11 104188007 104188145 -17655711 - B1_Mm SINE Alu -10 137 1 4 1379 3933 118 23 57 chr11 104188145 104188436 -17655420 - RMER6A LTR ERVK -353 337 4 4 1379 383 229 12 12 chr11 104188446 104188530 -17655326 + B1_Mur1 SINE Alu 55 138 -11 4 1379 923 239 14 37 chr11 104188794 104189011 -17654845 + ID_B1 SINE B4 9 220 -4 4 1379 731 203 36 0 chr11 104189020 104189158 -17654698 + B1_Mus2 SINE Alu 5 147 0 4 1379 378 107 0 0 chr11 104189158 104189214 -17654642 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 4 1379 381 131 0 0 chr11 104191384 104191445 -17652411 + (A)n Simple_repeat Simple_repeat 1 61 0 4 1379 330 179 269 0 chr11 104193873 104193951 -17649905 - PB1D10 SINE Alu -6 111 13 4 1379 180 182 0 0 chr11 104194824 104194868 -17648988 + T-rich Low_complexity Low_complexity 1 44 0 4 1379 218 196 0 0 chr11 104195019 104195070 -17648786 + T-rich Low_complexity Low_complexity 1 51 0 4 1379 21 36 0 0 chr11 104198078 104198106 -17645750 + AT_rich Low_complexity Low_complexity 1 28 0 4 1379 1760 10 0 0 chr11 104198208 104198401 -17645455 - B2_Mm1a SINE B2 0 193 1 4 1379 353 284 0 11 chr11 104198537 104198626 -17645230 - B1F SINE Alu -51 98 11 4 1379 1404 54 49 0 chr11 104198648 104198833 -17645023 + B2_Mm2 SINE B2 2 195 0 4 1379 335 195 205 13 chr11 104198902 104198980 -17644876 - B1F SINE Alu -51 98 6 4 1379 1221 105 12 0 chr11 104199107 104199278 -17644578 + B2_Mm1t SINE B2 2 174 -19 4 1379 516 32 0 0 chr11 104199281 104199343 -17644513 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 4 1379 480 189 27 45 chr11 104199905 104200016 -17643840 - B1_Mus2 SINE Alu 0 147 39 4 1379 718 228 0 45 chr11 104200473 104200629 -17643227 + B1_Mur2 SINE Alu 1 149 0 4 1379 1243 48 0 0 chr11 104200637 104200784 -17643072 + B1_Mus2 SINE Alu 1 147 0 4 1379 1206 34 0 33 chr11 104201653 104201804 -17642052 - B1_Mus2 SINE Alu -1 146 1 4 1379 476 220 43 52 chr11 104202015 104202130 -17641726 + PB1D9 SINE Alu 1 114 -6 4 1380 387 0 0 0 chr11 104202243 104202286 -17641570 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 4 1380 306 366 40 35 chr11 104202587 104202788 -17641068 + MIRb SINE MIR 7 208 -60 4 1380 291 211 0 17 chr11 104202797 104202855 -17641001 - B1F1 SINE Alu -88 61 5 4 1380 194 327 102 9 chr11 104204913 104205021 -17638835 - L4 LINE RTE -1499 530 413 4 1380 330 269 144 0 chr11 104205613 104205717 -17638139 - PB1 SINE Alu -8 119 1 4 1380 225 277 118 24 chr11 104205915 104206000 -17637856 + PB1D7 SINE Alu 27 119 -1 4 1380 280 187 117 26 chr11 104206077 104206154 -17637702 - B1_Mur1 SINE Alu 0 149 66 4 1380 759 251 83 71 chr11 104206173 104206426 -17637430 + Lx7 LINE L1 7078 7333 -363 4 1380 359 130 54 68 chr11 104206438 104206512 -17637344 - B1_Mus2 SINE Alu 0 147 75 4 1380 301 209 86 21 chr11 104206539 104206632 -17637224 - L1MEe LINE L1 -4055 799 701 4 1380 421 220 110 0 chr11 104206732 104206832 -17637024 - PB1D9 SINE Alu 0 120 10 4 1380 644 263 12 2 chr11 104206758 104206918 -17636938 - ID_B1 SINE B4 -124 168 4 4 1380 588 309 14 7 chr11 104206977 104207111 -17636745 - B3 SINE B2 -42 174 40 4 1380 568 194 30 75 chr11 104207111 104207245 -17636611 + B1_Mur3 SINE Alu 1 128 -21 4 1380 290 288 25 0 chr11 104207296 104207376 -17636480 + ID4 SINE ID 2 83 0 4 1380 494 250 0 33 chr11 104207469 104207589 -17636267 + PB1D9 SINE Alu 1 116 -4 4 1380 196 77 0 103 chr11 104208368 104208426 -17635430 + A-rich Low_complexity Low_complexity 3 54 0 4 1380 245 288 26 40 chr11 104208642 104208718 -17635138 - ID SINE ID -148 76 2 4 1380 316 126 448 0 chr11 104208911 104208998 -17634858 + B1_Mus2 SINE Alu 22 147 0 4 1380 410 247 20 30 chr11 104208999 104209099 -17634757 - PB1D9 SINE Alu -12 108 10 4 1380 280 339 98 38 chr11 104209130 104209262 -17634594 - B1F2 SINE Alu -9 140 1 4 1380 1157 62 0 20 chr11 104209283 104209431 -17634425 + B1_Mus2 SINE Alu 2 146 -1 4 1380 214 295 0 47 chr11 104209476 104209540 -17634316 - B1F1 SINE Alu -83 66 6 4 1380 956 76 83 8 chr11 104209712 104209844 -17634012 + B1_Mus1 SINE Alu 2 143 -5 4 1380 649 229 77 61 chr11 104209987 104210168 -17633688 + ID_B1 SINE B4 25 208 -16 4 1380 737 168 80 0 chr11 104210303 104210440 -17633416 + B1_Mur2 SINE Alu 2 149 0 4 1380 1378 89 21 0 chr11 104210994 104211185 -17632671 + B2_Mm2 SINE B2 1 195 0 4 1380 1408 61 61 0 chr11 104211185 104211344 -17632512 + B2_Mm1t SINE B2 2 160 -33 4 1380 207 0 0 0 chr11 104211344 104211367 -17632489 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1380 1408 61 61 0 chr11 104211367 104211388 -17632468 + B2_Mm1t SINE B2 161 192 -1 4 1380 585 222 89 14 chr11 104211399 104211603 -17632253 + B3 SINE B2 3 198 0 4 1380 416 190 17 10 chr11 104211615 104211710 -17632146 + B1F1 SINE Alu 1 97 -50 4 1380 1147 65 0 0 chr11 104212205 104212343 -17631513 + B1_Mm SINE Alu 1 138 -9 4 1380 339 25 0 0 chr11 104212343 104212383 -17631473 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 1380 336 219 45 62 chr11 104212802 104212914 -17630942 + L1M4b LINE L1 2217 2326 -5008 4 1380 297 75 0 0 chr11 104212996 104213036 -17630820 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 4 1380 23 33 0 0 chr11 104213467 104213497 -17630359 + AT_rich Low_complexity Low_complexity 1 30 0 4 1380 326 294 29 29 chr11 104213521 104213626 -17630230 + PB1D10 SINE Alu 13 117 0 4 1380 287 325 13 13 chr11 104213627 104213705 -17630151 + ID4_ SINE ID 6 83 0 4 1380 303 284 0 54 chr11 104213706 104213809 -17630047 + A-rich Low_complexity Low_complexity 1 96 0 4 1380 1117 101 89 0 chr11 104213809 104213988 -17629868 + B2_Mm2 SINE B2 1 195 0 4 1380 303 284 0 54 chr11 104213988 104214014 -17629842 + A-rich Low_complexity Low_complexity 97 122 0 4 1380 1215 78 78 0 chr11 104214102 104214269 -17629587 + B2_Mm1t SINE B2 2 181 -12 4 1380 258 32 0 0 chr11 104214269 104214300 -17629556 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1380 657 269 96 5 chr11 104214311 104214509 -17629347 + B3 SINE B2 1 216 0 4 1380 629 189 115 0 chr11 104214526 104214648 -17629208 + B1_Mur2 SINE Alu 13 148 -1 4 1380 569 204 78 0 chr11 104214898 104215040 -17628816 + B2_Mm2 SINE B2 38 190 -5 4 1380 364 319 62 57 chr11 104215260 104215453 -17628403 - B3A SINE B2 -4 194 1 4 1380 194 335 177 30 chr11 104215483 104215720 -17628136 + L2a LINE L2 1917 2188 -1231 4 1380 246 352 49 21 chr11 104215820 104215962 -17627894 + L2a LINE L2 3281 3426 0 4 1380 251 284 138 60 chr11 104216145 104216261 -17627595 + PB1 SINE Alu 1 125 -2 4 1380 333 342 93 11 chr11 104216352 104216535 -17627321 + B3 SINE B2 4 201 -15 4 1380 1019 76 0 0 chr11 104216563 104216694 -17627162 + B1_Mus1 SINE Alu 10 140 -8 4 1380 470 213 129 124 chr11 104216874 104217099 -17626757 - RMER1C Other Other 0 1342 1117 4 1380 282 281 95 19 chr11 104217202 104217307 -17626549 + PB1D10 SINE Alu 5 117 0 4 1380 396 277 19 96 chr11 104217480 104217636 -17626220 - ID_B1 SINE B4 0 224 81 4 1380 766 155 47 53 chr11 104218956 104219106 -17624750 + B1_Mur4 SINE Alu 1 149 -1 4 1380 633 27 0 0 chr11 104219572 104219647 -17624209 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1380 521 170 79 9 chr11 104219663 104219781 -17624075 - B1_Mur3 SINE Alu -11 138 19 4 1380 407 205 27 199 chr11 104219820 104219966 -17623890 + B4A SINE B4 3 123 -169 4 1380 550 263 69 109 chr11 104220041 104220216 -17623640 + B3A SINE B2 27 194 -4 4 1380 867 255 19 0 chr11 104220226 104220438 -17623418 + B3 SINE B2 1 216 0 4 1380 390 291 141 7 chr11 104220478 104220627 -17623229 + B4 SINE B4 124 292 0 4 1380 21 36 0 0 chr11 104220805 104220833 -17623023 + AT_rich Low_complexity Low_complexity 1 28 0 4 1380 920 156 45 13 chr11 104221193 104221349 -17622507 + URR1B DNA MER1_type 1 161 -64 4 1380 533 281 85 68 chr11 104221360 104221536 -17622320 + B3 SINE B2 27 205 -11 5 1380 337 269 67 42 chr11 104221618 104221738 -17622118 + PB1D10 SINE Alu 7 129 -18 5 1380 259 259 167 11 chr11 104221844 104221934 -17621922 + ID_B1 SINE B4 113 216 -8 5 1380 265 232 157 12 chr11 104222097 104222180 -17621676 + ID_B1 SINE B4 119 213 -11 5 1380 1168 57 0 0 chr11 104222181 104222315 -17621541 + B1_Mus2 SINE Alu 1 134 -13 5 1380 241 47 47 0 chr11 104222315 104222358 -17621498 + (CAA)n Simple_repeat Simple_repeat 1 45 0 5 1380 525 235 41 32 chr11 104222534 104222657 -17621199 - B1_Mur2 SINE Alu -1 148 25 5 1380 848 113 12 30 chr11 104222689 104222853 -17621003 + CT-rich Low_complexity Low_complexity 1 161 0 5 1380 559 98 363 0 chr11 104222853 104222955 -17620901 - B1_Mm SINE Alu -8 139 1 5 1380 2140 193 109 2 chr11 104222998 104223449 -17620407 + RLTR19 LTR ERVK 1 499 0 5 1380 996 66 7 0 chr11 104223848 104223984 -17619872 + B1_Mus2 SINE Alu 1 137 -10 5 1380 280 178 132 114 chr11 104224200 104224314 -17619542 - PB1D9 SINE Alu 0 120 5 5 1380 499 229 10 0 chr11 104224322 104224418 -17619438 + B1_Mur1 SINE Alu 53 149 0 5 1380 816 76 8 16 chr11 104224542 104224663 -17619193 - B1_Mus1 SINE Alu -1 147 28 5 1380 697 144 17 8 chr11 104224788 104224907 -17618949 - PB1D9 SINE Alu 0 120 1 5 1380 276 315 130 0 chr11 104225717 104225825 -17618031 - ID_B1 SINE B4 -53 171 50 5 1380 210 105 0 0 chr11 104226164 104226202 -17617654 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1380 1088 50 43 0 chr11 104226202 104226343 -17617513 - B1_Mus2 SINE Alu 0 147 1 5 1380 204 229 0 79 chr11 104226617 104226693 -17617163 + A-rich Low_complexity Low_complexity 4 73 0 5 1380 476 287 35 92 chr11 104226829 104227002 -17616854 + B4 SINE B4 61 223 -69 5 1380 754 206 14 14 chr11 104226861 104227004 -17616852 + B1_Mur2 SINE Alu 7 149 0 5 1380 235 242 90 15 chr11 104227105 104227172 -17616684 + L1MC4a LINE L1 6359 6430 -1452 5 1380 346 313 34 34 chr11 104227208 104227327 -17616529 + B1_Mur3 SINE Alu 1 119 -1 5 1380 461 177 0 40 chr11 104227399 104227426 -17616430 - B3A SINE B2 -8 208 8 5 1380 265 344 41 10 chr11 104227426 104227523 -17616333 - B4A SINE B4 -185 107 8 5 1380 480 126 25 24 chr11 104227740 104227845 -17616011 - PB1D9 SINE Alu -9 111 13 5 1380 284 240 13 51 chr11 104227909 104227988 -17615868 + B1_Mur4 SINE Alu 75 150 0 5 1380 258 235 29 0 chr11 104228065 104228133 -17615723 + L1MC4a LINE L1 6905 6974 -908 5 1380 531 310 34 92 chr11 104228193 104228399 -17615457 + B4A SINE B4 2 195 -97 5 1380 304 318 37 18 chr11 104228354 104228463 -17615393 - ID_B1 SINE B4 -37 187 77 5 1380 221 266 150 12 chr11 104228473 104228553 -17615303 - PB1D9 SINE Alu -1 119 29 5 1380 225 0 0 0 chr11 104228561 104228586 -17615270 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1380 24 0 0 0 chr11 104228905 104228929 -17614927 + AT_rich Low_complexity Low_complexity 1 24 0 5 1380 659 194 0 23 chr11 104228946 104229078 -17614778 + B1_Mur2 SINE Alu 13 141 -8 5 1380 226 91 0 0 chr11 104229248 104229281 -17614575 - B1_Mm SINE Alu -2 145 113 5 1380 548 306 21 45 chr11 104229281 104229524 -17614332 - Lx8 LINE L1 -315 7158 6922 5 1380 614 279 77 41 chr11 104229549 104229743 -17614113 - ID_B1 SINE B4 0 224 24 5 1380 258 342 14 0 chr11 104229686 104229759 -17614097 - ID4_ SINE ID -3 80 7 5 1380 414 188 52 35 chr11 104230294 104230410 -17613446 - PB1D9 SINE Alu 0 120 3 5 1380 509 182 336 0 chr11 104230796 104230939 -17612917 + B2_Mm2 SINE B2 2 192 -3 5 1380 247 297 26 51 chr11 104231146 104231224 -17612632 + ID4_ SINE ID 6 81 -2 5 1380 22 0 0 0 chr11 104231332 104231354 -17612502 + AT_rich Low_complexity Low_complexity 1 22 0 5 1380 228 349 46 28 chr11 104231368 104231477 -17612379 + PB1D7 SINE Alu 10 120 0 5 1380 1228 66 18 0 chr11 104231554 104231720 -17612136 + B2_Mm2 SINE B2 4 172 -23 5 1380 257 315 124 0 chr11 104231937 104232026 -17611830 - PB1D10 SINE Alu -13 104 5 5 1380 1109 56 21 0 chr11 104232537 104232679 -17611177 - B1_Mus1 SINE Alu -1 147 3 5 1380 243 328 49 0 chr11 104232684 104232745 -17611111 - B1F SINE Alu -85 64 1 5 1380 588 145 65 57 chr11 104232783 104232907 -17610949 - B1_Mus2 SINE Alu 0 147 23 5 1380 323 222 69 0 chr11 104233292 104233364 -17610492 + ID_B1 SINE B4 115 191 -33 5 1380 237 293 0 68 chr11 104233364 104233380 -17610476 + PB1D10 SINE Alu 34 115 -2 5 1380 615 222 124 54 chr11 104233654 104233840 -17610016 - B3 SINE B2 0 216 18 5 1380 1200 34 0 0 chr11 104233888 104234034 -17609822 - B1_Mm SINE Alu 0 147 2 5 1380 442 18 0 0 chr11 104234038 104234093 -17609763 - B1_Mur4 SINE Alu 0 150 96 5 1380 549 98 130 0 chr11 104234121 104234213 -17609643 + B1_Mur4 SINE Alu 30 133 -17 5 1380 377 295 0 80 chr11 104234270 104234432 -17609424 + B1F1 SINE Alu 1 149 0 5 1380 319 326 76 0 chr11 104234463 104234555 -17609301 + B1_Mur2 SINE Alu 2 100 -49 5 1380 449 272 48 0 chr11 104234474 104234577 -17609279 + ID_B1 SINE B4 94 201 -23 5 1380 3944 77 88 7 chr11 104235107 104235673 -17608183 - L1_Mus3 LINE L1 -4 6634 6023 5 1380 229 260 0 20 chr11 104235769 104235820 -17608036 - RSINE1 SINE B4 -104 61 12 5 1380 291 319 11 11 chr11 104235909 104236001 -17607855 + MLT1C LTR MaLR 368 459 -8 5 1380 567 310 50 19 chr11 104236142 104236303 -17607553 + B3 SINE B2 51 216 0 5 1380 284 370 0 0 chr11 104236329 104236421 -17607435 + ID_B1 SINE B4 80 171 -53 5 1380 186 43 0 0 chr11 104236523 104236546 -17607310 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 5 1380 3465 48 7 9 chr11 104236551 104236993 -17606863 - L1Md_F2 LINE L1 -10 6572 6132 5 1380 723 95 0 37 chr11 104237019 104237128 -17606728 - B2_Mm2 SINE B2 -88 107 3 5 1380 25 0 0 0 chr11 104237358 104237383 -17606473 + AT_rich Low_complexity Low_complexity 1 25 0 5 1380 418 297 92 26 chr11 104237640 104237792 -17606064 - RSINE1 SINE B4 -2 163 2 5 1380 795 191 144 17 chr11 104237823 104238004 -17605852 + B3 SINE B2 6 209 -7 5 1380 1407 71 16 0 chr11 104238279 104238463 -17605393 - B2_Mm2 SINE B2 -7 188 2 5 1380 366 80 0 0 chr11 104238693 104238743 -17605113 + (A)n Simple_repeat Simple_repeat 1 50 0 5 1380 370 295 32 0 chr11 104239117 104239212 -17604644 - B3A SINE B2 -98 100 3 5 1380 195 237 205 26 chr11 104239351 104239429 -17604427 + L2a LINE L2 3305 3396 -30 5 1380 529 244 9 7 chr11 104240456 104240577 -17603279 - PB1D9 SINE Alu -31 119 4 5 1380 402 312 17 68 chr11 104240879 104240996 -17602860 - ID_B1 SINE B4 -21 203 93 5 1380 539 187 208 0 chr11 104241050 104241204 -17602652 - B3 SINE B2 -4 212 27 5 1380 236 202 167 0 chr11 104241352 104241436 -17602420 + L1M5 LINE L1 4725 4822 -1324 5 1380 329 290 11 21 chr11 104241710 104241805 -17602051 + PB1D7 SINE Alu 14 107 -13 5 1380 374 250 0 24 chr11 104243331 104243413 -17600443 - B1_Mur2 SINE Alu -24 125 46 5 1380 390 167 12 37 chr11 104243879 104243960 -17599896 + B3 SINE B2 138 216 0 5 1380 1156 74 0 0 chr11 104244174 104244322 -17599534 + B1_Mus1 SINE Alu 1 148 0 5 1380 180 0 0 0 chr11 104244359 104244379 -17599477 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1380 291 54 0 0 chr11 104244675 104244712 -17599144 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 5 1380 216 0 0 0 chr11 104245490 104245514 -17598342 + (TATG)n Simple_repeat Simple_repeat 4 27 0 5 1380 315 286 0 0 chr11 104245918 104245974 -17597882 - B1F SINE Alu -61 88 33 5 1380 847 154 83 6 chr11 104246394 104246551 -17597305 - URR1A DNA MER1_type 0 226 58 5 1380 207 305 0 17 chr11 104246778 104246838 -17597018 - MIR SINE MIR -120 142 84 5 1380 1252 21 0 0 chr11 104247202 104247347 -17596509 - B1_Mm SINE Alu -2 145 1 5 1380 22 0 0 0 chr11 104247453 104247475 -17596381 + AT_rich Low_complexity Low_complexity 1 22 0 5 1380 227 229 0 20 chr11 104247475 104247524 -17596332 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 5 1380 676 216 14 35 chr11 104247528 104247672 -17596184 - B1_Mus2 SINE Alu -6 141 1 5 1380 669 267 71 10 chr11 104247748 104247945 -17595911 + B3 SINE B2 3 211 -5 5 1380 438 20 0 0 chr11 104248152 104248203 -17595653 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1380 268 258 110 22 chr11 104248929 104249020 -17594836 - PB1D10 SINE Alu -7 110 12 5 1380 510 344 6 36 chr11 104249304 104249470 -17594386 - B3A SINE B2 -11 187 27 5 1380 29 0 0 0 chr11 104249644 104249673 -17594183 + AT_rich Low_complexity Low_complexity 1 29 0 5 1380 365 184 79 0 chr11 104249782 104249858 -17593998 + B3 SINE B2 129 210 -6 5 1380 530 146 11 22 chr11 104249878 104249969 -17593887 + B3 SINE B2 4 93 -123 5 1380 1285 102 27 0 chr11 104250067 104250253 -17593603 - B2_Mm1t SINE B2 -2 191 1 5 1380 526 180 152 9 chr11 104250254 104250366 -17593490 + B1_Mur4 SINE Alu 15 142 -8 5 1380 552 264 0 0 chr11 104250404 104250514 -17593342 + B3 SINE B2 1 110 -106 5 1380 541 312 44 13 chr11 104250551 104250710 -17593146 - B3A SINE B2 -34 164 1 5 1380 251 312 97 110 chr11 104251039 104251194 -17592662 - B3A SINE B2 0 198 46 6 1380 310 222 127 0 chr11 104251240 104251342 -17592514 + PB1D9 SINE Alu 5 132 -15 6 1380 504 0 0 0 chr11 104251377 104251433 -17592423 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 6 1380 699 46 0 0 chr11 104251434 104251521 -17592335 + (GGAAA)n Simple_repeat Simple_repeat 4 90 0 6 1380 306 305 169 15 chr11 104251524 104251654 -17592202 + ID_B1 SINE B4 1 150 -74 6 1380 261 179 68 114 chr11 104251666 104251754 -17592102 + B4 SINE B4 209 292 0 6 1380 236 125 0 0 chr11 104252255 104252295 -17591561 + L1MC5 LINE L1 7806 7845 -116 6 1380 413 276 62 39 chr11 104252447 104252575 -17591281 + B1F1 SINE Alu 11 141 -8 6 1380 958 94 51 0 chr11 104252806 104252944 -17590912 + B2_Mm2 SINE B2 2 146 -49 6 1380 354 127 0 0 chr11 104252944 104252999 -17590857 + B2_Mm2 SINE B2 1 55 -140 6 1380 225 0 0 0 chr11 104253217 104253242 -17590614 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 6 1380 373 336 81 139 chr11 104253349 104253531 -17590325 + B4A SINE B4 35 229 -63 6 1380 385 252 78 8 chr11 104253531 104253659 -17590197 + B1F1 SINE Alu 1 137 -12 6 1380 373 336 81 139 chr11 104253659 104253749 -17590107 + B4A SINE B4 230 291 -1 6 1380 22 0 0 0 chr11 104253850 104253872 -17589984 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 492 268 40 24 chr11 104254255 104254381 -17589475 + B1_Mur1 SINE Alu 22 149 0 6 1380 676 190 25 0 chr11 104254384 104254505 -17589351 + B1_Mur3 SINE Alu 1 124 -25 6 1380 715 195 0 45 chr11 104255170 104255326 -17588530 + B1_Mur4 SINE Alu 1 149 -1 6 1380 229 224 70 12 chr11 104255361 104255447 -17588409 - L1MC2 LINE L1 -126 6218 6128 6 1380 246 32 0 0 chr11 104255745 104255776 -17588080 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1380 842 150 29 64 chr11 104255920 104256091 -17587765 + URR1B DNA MER1_type 7 171 -54 6 1380 214 330 92 10 chr11 104256094 104256192 -17587664 + L2 LINE L2 2868 2973 -446 6 1380 28 0 0 0 chr11 104256739 104256767 -17587089 + AT_rich Low_complexity Low_complexity 1 28 0 6 1380 857 156 50 0 chr11 104256776 104256917 -17586939 + B1_Mur4 SINE Alu 2 149 -1 6 1380 763 37 0 44 chr11 104257270 104257384 -17586472 + B1_Mus2 SINE Alu 39 147 0 6 1380 231 88 0 0 chr11 104257414 104257448 -17586408 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1380 567 268 22 7 chr11 104257465 104257604 -17586252 + RSINE1 SINE B4 3 143 -22 6 1380 318 296 113 43 chr11 104258467 104258608 -17585248 - RSINE1 SINE B4 0 165 15 6 1380 867 165 21 59 chr11 104258680 104258867 -17584989 - B2_Mm2 SINE B2 -14 181 2 6 1380 190 320 0 93 chr11 104259613 104259699 -17584157 - L2a LINE L2 -300 3126 3049 6 1380 253 220 0 0 chr11 104260272 104260322 -17583534 - ORR1D2 LTR MaLR -320 50 1 6 1380 779 214 64 30 chr11 104260399 104260601 -17583255 + B3 SINE B2 1 209 -7 6 1380 572 235 242 9 chr11 104260750 104260969 -17582887 - B4 SINE B4 -19 273 4 6 1380 324 235 18 69 chr11 104261013 104261142 -17582714 + B3 SINE B2 5 193 -5 6 1380 289 261 0 0 chr11 104261424 104261489 -17582367 + PB1D10 SINE Alu 32 96 -21 6 1380 280 312 62 0 chr11 104262327 104262407 -17581449 + B1F1 SINE Alu 10 94 -55 6 1380 255 31 0 0 chr11 104262807 104262839 -17581017 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1380 263 277 60 12 chr11 104262876 104262960 -17580896 - PB1D10 SINE Alu -6 111 24 6 1380 303 243 50 14 chr11 104263030 104263120 -17580736 + ID_B1 SINE B4 81 169 -55 6 1380 230 298 71 12 chr11 104263047 104263132 -17580724 + B1_Mur3 SINE Alu 14 103 -46 6 1380 916 152 84 63 chr11 104263319 104263509 -17580347 - B2_Mm2 SINE B2 0 195 2 6 1380 779 251 33 38 chr11 104263694 104263905 -17579951 - B3 SINE B2 -4 212 3 6 1380 264 333 61 45 chr11 104264017 104264149 -17579707 + RSINE1 SINE B4 3 136 -29 6 1380 189 0 0 0 chr11 104264174 104264195 -17579661 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1380 1011 95 0 26 chr11 104264198 104264350 -17579506 + B1_Mus1 SINE Alu 1 148 0 6 1380 260 224 35 0 chr11 104264458 104264516 -17579340 - PB1D10 SINE Alu -9 108 49 6 1380 658 181 20 55 chr11 104264680 104264826 -17579030 - B1_Mur4 SINE Alu -9 141 1 6 1380 499 214 134 0 chr11 104265290 104265402 -17578454 + B1_Mus2 SINE Alu 21 147 0 6 1380 366 23 0 0 chr11 104265440 104265483 -17578373 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1380 22 0 0 0 chr11 104265489 104265511 -17578345 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 613 247 87 120 chr11 104265999 104266059 -17577797 + MER2 DNA MER2_type 57 115 -230 6 1380 1080 29 43 7 chr11 104266059 104266199 -17577657 + B1_Mus2 SINE Alu 3 147 0 6 1380 613 247 87 120 chr11 104266199 104266437 -17577419 + MER2 DNA MER2_type 116 345 0 6 1380 637 94 131 9 chr11 104266827 104266934 -17576922 - PB1D9 SINE Alu 0 120 1 6 1380 346 305 118 8 chr11 104267026 104267145 -17576711 + RSINE1 SINE B4 3 134 -31 6 1380 22 35 0 0 chr11 104267434 104267463 -17576393 + AT_rich Low_complexity Low_complexity 1 29 0 6 1380 358 268 87 31 chr11 104267599 104267795 -17576061 + L1MB7 LINE L1 4935 5141 -1005 6 1380 1333 96 11 0 chr11 104267856 104268044 -17575812 - B2_Mm1t SINE B2 -2 191 2 6 1380 734 301 87 50 chr11 104268108 104268416 -17575440 + L1MB7 LINE L1 5483 5816 -368 6 1380 664 202 85 0 chr11 104268416 104268545 -17575311 + B1_Mur1 SINE Alu 1 140 -9 6 1380 734 301 87 50 chr11 104268545 104268733 -17575123 + L1MB7 LINE L1 5817 5997 -187 6 1380 525 248 46 39 chr11 104268902 104269032 -17574824 - RSINE1 SINE B4 -33 132 2 6 1380 357 269 43 0 chr11 104269100 104269193 -17574663 + B1_Mus2 SINE Alu 1 97 -50 6 1380 316 275 87 0 chr11 104269225 104269294 -17574562 + RSINE1 SINE B4 20 94 -71 6 1380 216 86 0 0 chr11 104269327 104269362 -17574494 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1380 274 220 66 82 chr11 104269688 104269839 -17574017 + B3 SINE B2 1 163 -32 6 1380 1035 64 42 7 chr11 104270188 104270330 -17573526 - B1_Mus2 SINE Alu 0 147 1 6 1380 213 196 100 67 chr11 104270394 104270454 -17573402 - MER5A DNA MER1_type -3 186 125 6 1380 573 298 13 32 chr11 104270455 104270611 -17573245 + B3 SINE B2 58 210 -6 6 1380 249 296 70 0 chr11 104271657 104271728 -17572128 - B3A SINE B2 -122 76 1 6 1380 620 291 143 29 chr11 104271820 104272064 -17571792 + B4A SINE B4 1 272 -20 6 1380 250 240 37 74 chr11 104272262 104272343 -17571513 + B1_Mus1 SINE Alu 36 113 -35 6 1380 1423 80 5 0 chr11 104272411 104272599 -17571257 + B2_Mm1t SINE B2 1 189 -4 6 1380 518 115 10 0 chr11 104272618 104272722 -17571134 + L1Md_F2 LINE L1 6478 6582 0 6 1380 265 312 104 21 chr11 104273230 104273250 -17570606 + ID_B1 SINE B4 65 220 -4 6 1380 437 228 153 8 chr11 104273250 104273374 -17570482 + B1_Mus1 SINE Alu 6 147 -1 6 1380 22 0 0 0 chr11 104273381 104273403 -17570453 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 906 228 0 38 chr11 104273656 104273866 -17569990 - B3 SINE B2 -10 206 5 6 1380 729 244 173 7 chr11 104273966 104274276 -17569580 + MTEa LTR MaLR 19 379 0 6 1380 506 313 26 39 chr11 104274492 104274645 -17569211 - RSINE1 SINE B4 -12 153 3 6 1380 580 210 42 8 chr11 104275174 104275294 -17568562 + B1_Mur4 SINE Alu 7 130 -20 6 1380 445 255 46 156 chr11 104275324 104275424 -17568432 + B3 SINE B2 1 77 -139 6 1380 1223 34 0 0 chr11 104275424 104275570 -17568286 - B1_Mus2 SINE Alu 0 147 2 6 1380 445 255 46 156 chr11 104275570 104275706 -17568150 + B3 SINE B2 78 211 -5 6 1380 389 232 152 0 chr11 104275726 104275838 -17568018 + B3 SINE B2 2 130 -86 6 1380 204 321 113 7 chr11 104276024 104276165 -17567691 + MIRc SINE MIR 21 176 -92 6 1380 1128 49 0 14 chr11 104276459 104276605 -17567251 + B1_Mm SINE Alu 2 145 -2 6 1380 270 277 185 85 chr11 104276884 104276970 -17566886 + B1_Mus2 SINE Alu 5 105 -42 6 1380 1243 116 17 0 chr11 104276970 104277151 -17566705 + B2_Mm2 SINE B2 1 184 -11 6 1380 270 277 185 85 chr11 104277151 104277194 -17566662 + B1_Mus2 SINE Alu 106 147 0 6 1380 593 56 0 0 chr11 104277196 104277268 -17566588 + L1Md_F3 LINE L1 5515 5586 -297 6 1380 7855 43 14 1 chr11 104277268 104278237 -17565619 + L1Md_F3 LINE L1 5587 6568 -16 6 1380 581 197 81 16 chr11 104278792 104278916 -17564940 + ID_B1 SINE B4 85 216 -8 6 1380 541 226 79 21 chr11 104278940 104279080 -17564776 + B1_Mur1 SINE Alu 1 148 -1 6 1380 518 212 121 0 chr11 104279208 104279340 -17564516 + B3 SINE B2 2 149 -67 6 1380 234 0 0 0 chr11 104279492 104279518 -17564338 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1380 408 219 72 10 chr11 104280310 104280407 -17563449 + B1_Mus2 SINE Alu 45 147 0 6 1380 619 274 72 12 chr11 104280423 104280589 -17563267 + B3A SINE B2 1 176 -22 6 1380 738 27 282 0 chr11 104281202 104281312 -17562544 - B1_Mus1 SINE Alu -5 143 3 6 1380 776 199 7 41 chr11 104281566 104281587 -17562269 - B1_Mur2 SINE Alu -7 142 125 6 1380 1150 186 13 22 chr11 104281587 104281813 -17562043 + URR1B DNA MER1_type 1 224 -1 6 1380 776 199 7 41 chr11 104281813 104281938 -17561918 - B1_Mur2 SINE Alu -25 124 1 6 1380 677 106 168 0 chr11 104283300 104283413 -17560443 + B1_Mur4 SINE Alu 1 132 -18 6 1380 247 313 130 10 chr11 104283585 104283685 -17560171 + PB1D10 SINE Alu 6 117 0 6 1380 422 267 100 64 chr11 104283686 104283826 -17560030 + B3 SINE B2 50 194 -4 6 1380 224 191 45 0 chr11 104283876 104283965 -17559891 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1380 1592 296 126 36 chr11 104284117 104284784 -17559072 + MER21B LTR ERV1 90 816 -47 6 1380 873 150 0 8 chr11 104286913 104287047 -17556809 + B1_Mur4 SINE Alu 2 134 -16 6 1380 520 293 49 0 chr11 104287927 104288050 -17555806 - RSINE1 SINE B4 -33 132 4 6 1380 236 111 65 22 chr11 104288067 104288113 -17555743 + Charlie1a DNA MER1_type 67 114 -1341 7 1380 378 0 0 0 chr11 104288135 104288177 -17555679 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1380 353 304 78 23 chr11 104288180 104288308 -17555548 - RSINE1 SINE B4 -30 135 1 7 1380 445 254 68 0 chr11 104288308 104288424 -17555432 + Charlie1a DNA MER1_type 108 231 -1224 7 1380 212 312 42 0 chr11 104288497 104288545 -17555311 + RSINE1 SINE B4 96 145 -20 7 1380 518 321 15 0 chr11 104288796 104288930 -17554926 + ID_B1 SINE B4 81 216 -8 7 1380 805 276 27 11 chr11 104288934 104289117 -17554739 - B3 SINE B2 -26 190 5 7 1380 282 177 325 48 chr11 104289442 104289525 -17554331 - PB1D9 SINE Alu -13 107 2 7 1380 922 86 96 26 chr11 104289636 104289792 -17554064 + B2_Mm2 SINE B2 2 168 -27 7 1380 1426 63 0 0 chr11 104289816 104289990 -17553866 + B2_Mm1t SINE B2 1 174 -19 7 1380 243 278 93 72 chr11 104290023 104290120 -17553736 + RSINE1 SINE B4 53 151 -14 7 1380 601 284 57 21 chr11 104290196 104290390 -17553466 + B3 SINE B2 1 201 -15 7 1380 22 0 0 0 chr11 104290390 104290412 -17553444 + AT_rich Low_complexity Low_complexity 1 22 0 7 1380 227 247 42 115 chr11 104290614 104290632 -17553224 + MT2B LTR ERVL 149 159 -442 7 1380 405 296 34 17 chr11 104290632 104290739 -17553117 + B1F2 SINE Alu 1 111 -9 7 1380 255 31 0 0 chr11 104290739 104290771 -17553085 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1380 439 323 23 8 chr11 104290936 104291064 -17552792 + RSINE1 SINE B4 12 141 -24 7 1380 207 0 0 0 chr11 104291073 104291096 -17552760 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1380 1355 93 5 20 chr11 104291185 104291382 -17552474 + B2_Mm2 SINE B2 2 195 0 7 1380 539 209 42 35 chr11 104291388 104291405 -17552451 + ID_B1 SINE B4 78 222 -2 7 1380 790 110 47 0 chr11 104291405 104291532 -17552324 + B1_Mm SINE Alu 14 146 -1 7 1380 1205 47 0 13 chr11 104291641 104291791 -17552065 - B1_Mus1 SINE Alu 0 148 1 7 1380 226 319 9 113 chr11 104291877 104291983 -17551873 - MER20 DNA MER1_type -1 218 124 7 1380 573 141 0 0 chr11 104292264 104292363 -17551493 + (GGA)n Simple_repeat Simple_repeat 2 100 0 7 1380 846 146 8 0 chr11 104293905 104294035 -17549821 - B1_Mus2 SINE Alu -6 141 11 7 1380 1127 121 50 0 chr11 104294134 104294291 -17549565 + B2_Mm1t SINE B2 3 168 -25 7 1380 396 0 0 0 chr11 104294291 104294335 -17549521 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 7 1380 1127 121 50 0 chr11 104294335 104294359 -17549497 + B2_Mm1t SINE B2 169 192 -1 7 1380 399 310 84 15 chr11 104294485 104294616 -17549240 + RSINE1 SINE B4 12 151 -14 7 1380 387 0 0 0 chr11 104294627 104294670 -17549186 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1380 475 297 76 11 chr11 104294689 104294873 -17548983 - MIRb SINE MIR -10 258 63 7 1380 712 236 106 11 chr11 104294890 104295070 -17548786 - B3A SINE B2 -1 197 1 7 1380 647 25 0 0 chr11 104296369 104296449 -17547407 + B1_Mm SINE Alu 68 147 0 7 1380 423 202 67 48 chr11 104296724 104296828 -17547028 - PB1D9 SINE Alu -10 110 5 7 1380 23 54 0 0 chr11 104297001 104297038 -17546818 + AT_rich Low_complexity Low_complexity 1 37 0 7 1380 779 281 0 6 chr11 104297117 104297278 -17546578 - B3A SINE B2 -38 160 1 7 1380 228 218 227 11 chr11 104298456 104298544 -17545312 + B1F1 SINE Alu 5 111 -38 7 1380 543 202 98 44 chr11 104298675 104298872 -17544984 + B3A SINE B2 7 210 -6 7 1380 640 207 101 22 chr11 104298999 104299137 -17544719 - B1_Mur2 SINE Alu 0 149 1 7 1380 21 0 0 0 chr11 104299261 104299282 -17544574 + AT_rich Low_complexity Low_complexity 1 21 0 7 1380 181 256 114 13 chr11 104300155 104300234 -17543622 + MIR3 SINE MIR 98 184 -24 7 1380 201 94 0 0 chr11 104302702 104302734 -17541122 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1380 241 225 12 48 chr11 104302947 104303031 -17540825 + GA-rich Low_complexity Low_complexity 5 85 0 7 1380 24 96 0 0 chr11 104303129 104303202 -17540654 + GC_rich Low_complexity Low_complexity 1 73 0 7 1380 216 182 0 0 chr11 104303215 104303259 -17540597 + G-rich Low_complexity Low_complexity 4 47 0 7 1380 47 78 0 0 chr11 104303693 104303796 -17540060 + GC_rich Low_complexity Low_complexity 1 103 0 7 1380 243 125 0 0 chr11 104305184 104305224 -17538632 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1380 523 227 9 26 chr11 104305473 104305586 -17538270 + B1_Mur2 SINE Alu 4 114 -35 7 1380 244 182 70 35 chr11 104305590 104305647 -17538209 + MT2B2 LTR ERVL 199 257 -327 7 1380 768 21 11 0 chr11 104305596 104305691 -17538165 + B1_Mus2 SINE Alu 52 147 0 7 1380 183 42 0 0 chr11 104305694 104305718 -17538138 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1380 21 0 0 0 chr11 104305839 104305860 -17537996 + AT_rich Low_complexity Low_complexity 1 21 0 7 1380 632 106 150 0 chr11 104305949 104306062 -17537794 - B1_Mus2 SINE Alu -13 134 5 7 1380 189 0 0 0 chr11 104306113 104306134 -17537722 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1380 327 355 8 69 chr11 104306213 104306343 -17537513 + ID_B1 SINE B4 85 206 -18 7 1380 642 175 49 35 chr11 104306481 104306623 -17537233 + B1_Mus2 SINE Alu 1 144 -3 7 1380 657 254 0 14 chr11 104306642 104306782 -17537074 + B1F2 SINE Alu 11 148 -1 7 1380 249 271 113 14 chr11 104307550 104307621 -17536235 + B1F1 SINE Alu 12 89 -60 7 1380 375 307 161 12 chr11 104307639 104307807 -17536049 + ID_B1 SINE B4 22 214 -10 7 1380 647 106 65 37 chr11 104307883 104307991 -17535865 - B1_Mus1 SINE Alu -35 113 3 7 1380 606 265 141 29 chr11 104307993 104308199 -17535657 - B4A SINE B4 -61 231 3 7 1380 230 300 0 0 chr11 104308270 104308320 -17535536 + B4A SINE B4 82 131 -161 7 1380 621 184 44 0 chr11 104308314 104308428 -17535428 + B1_Mur3 SINE Alu 11 129 -20 7 1380 480 239 46 0 chr11 104308634 104308743 -17535113 - PB1D10 SINE Alu -2 115 2 7 1380 338 333 17 17 chr11 104309226 104309342 -17534514 + PB1D10 SINE Alu 1 116 -1 7 1380 611 258 76 13 chr11 104309414 104309571 -17534285 + B3 SINE B2 50 216 0 7 1380 486 294 43 22 chr11 104309599 104309738 -17534118 + B1F SINE Alu 3 144 -5 7 1380 648 179 73 0 chr11 104309800 104309923 -17533933 + B1_Mur2 SINE Alu 1 132 -17 7 1380 1243 88 35 0 chr11 104309948 104310119 -17533737 + B2_Mm1t SINE B2 5 181 -12 7 1380 358 98 32 10 chr11 104310149 104310259 -17533597 + B2_Mm2 SINE B2 47 194 -1 7 1380 391 112 189 0 chr11 104310317 104310424 -17533432 - B2_Mm2 SINE B2 -3 192 46 7 1380 1139 95 53 0 chr11 104310451 104310620 -17533236 - B2_Mm1t SINE B2 -14 179 2 7 1380 1877 142 117 24 chr11 104310728 104311317 -17532539 - RMER6C LTR ERVK 0 690 1 7 1380 1015 124 56 0 chr11 104311488 104311666 -17532190 - B2_Mm2 SINE B2 -6 189 2 7 1380 485 164 12 24 chr11 104311685 104311786 -17532070 + B1_Mur4 SINE Alu 40 145 -5 7 1380 410 227 138 73 chr11 104312240 104312351 -17531505 + L1M4 LINE L1 3619 3743 -2403 7 1380 1414 65 38 0 chr11 104312351 104312537 -17531319 + B2_Mm2 SINE B2 1 193 -2 7 1380 410 227 138 73 chr11 104312537 104312658 -17531198 + L1M4 LINE L1 3744 3866 -2280 7 1380 446 224 272 6 chr11 104312658 104312820 -17531036 + B3 SINE B2 2 206 -10 7 1380 410 227 138 73 chr11 104312820 104312971 -17530885 + L1M4 LINE L1 3867 4028 -2118 7 1380 285 299 78 33 chr11 104312973 104313063 -17530793 - PB1D10 SINE Alu -1 116 23 7 1380 672 160 0 0 chr11 104313193 104313312 -17530544 + GA-rich Low_complexity Low_complexity 2 120 0 7 1380 425 248 143 0 chr11 104313357 104313462 -17530394 - B1_Mur1 SINE Alu -12 137 18 7 1380 691 221 15 0 chr11 104313528 104313664 -17530192 + B1_Mm SINE Alu 10 147 0 7 1380 195 129 0 0 chr11 104313664 104313695 -17530161 + (GAAA)n Simple_repeat Simple_repeat 1 31 0 7 1380 411 253 58 0 chr11 104313695 104313849 -17530007 + L1M4 LINE L1 4074 4236 -1910 7 1380 589 319 13 34 chr11 104313849 104314031 -17529825 + ID_B1 SINE B4 70 249 -43 7 1380 579 241 82 92 chr11 104314095 104314301 -17529555 + B3 SINE B2 5 208 -8 7 1380 21 35 0 49 chr11 104314302 104314321 -17529535 + AT_rich Low_complexity Low_complexity 1 18 0 7 1380 861 92 273 7 chr11 104314321 104314464 -17529392 + B2_Mm2 SINE B2 1 181 -14 7 1380 21 35 0 49 chr11 104314464 104314476 -17529380 + AT_rich Low_complexity Low_complexity 1 12 0 7 1380 1233 34 0 0 chr11 104314476 104314622 -17529234 - B1_Mus2 SINE Alu 0 147 2 7 1380 21 35 0 49 chr11 104314622 104314650 -17529206 + AT_rich Low_complexity Low_complexity 1 28 0 7 1380 382 252 216 9 chr11 104314653 104314769 -17529087 + B1_Mus2 SINE Alu 2 141 -6 7 1380 790 269 39 0 chr11 104315619 104315801 -17528055 - B3 SINE B2 -5 211 23 7 1380 26 0 0 0 chr11 104315912 104315938 -17527918 + AT_rich Low_complexity Low_complexity 1 26 0 7 1380 207 0 0 0 chr11 104315972 104315995 -17527861 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 7 1380 302 339 131 87 chr11 104316036 104316288 -17527568 + B4 SINE B4 15 277 -15 7 1380 264 278 155 62 chr11 104316691 104316719 -17527137 + ID_B1 SINE B4 49 224 0 7 1380 308 287 150 30 chr11 104316719 104316852 -17527004 + B1F SINE Alu 1 149 0 7 1380 876 212 114 24 chr11 104317165 104317411 -17526445 + RLTR20A2 LTR ERVK 1 268 -310 7 1380 636 203 101 32 chr11 104317419 104317577 -17526279 + RLTR20A2 LTR ERVK 383 551 0 7 1380 910 148 0 32 chr11 104317900 104318054 -17525802 + B1_Mur3 SINE Alu 1 149 0 7 1380 220 104 0 59 chr11 104318069 104318120 -17525736 + G-rich Low_complexity Low_complexity 3 50 0 7 1380 23 33 0 0 chr11 104318563 104318593 -17525263 + AT_rich Low_complexity Low_complexity 1 30 0 7 1380 684 203 8 8 chr11 104318773 104318897 -17524959 - B1F SINE Alu -8 141 18 7 1380 563 274 52 0 chr11 104318952 104319087 -17524769 + RSINE1 SINE B4 4 145 -20 8 1380 334 202 62 73 chr11 104319254 104319350 -17524506 + PB1D10 SINE Alu 22 116 -1 8 1380 244 311 0 0 chr11 104319360 104319405 -17524451 + B1F1 SINE Alu 3 47 -102 8 1380 1388 59 27 5 chr11 104319883 104320071 -17523785 + B2_Mm2 SINE B2 1 192 -3 8 1380 1057 120 13 33 chr11 104320403 104320618 -17523238 - ORR1A3 LTR MaLR 0 329 116 8 1380 415 247 67 0 chr11 104320548 104320637 -17523219 - B1_Mus2 SINE Alu -31 116 22 8 1380 979 102 272 22 chr11 104320652 104320832 -17523024 - MT2B LTR ERVL -342 259 35 8 1380 2423 182 138 31 chr11 104320684 104321089 -17522767 - ORR1A2-int LTR MaLR -1165 798 358 8 1380 991 70 16 0 chr11 104321089 104321217 -17522639 + B1_Mus2 SINE Alu 2 131 -16 8 1380 2423 146 100 23 chr11 104321217 104321429 -17522427 - ORR1A2-int LTR MaLR -1606 357 1 8 1380 1883 120 89 13 chr11 104321429 104321733 -17522123 - ORR1A2 LTR MaLR 0 327 1 8 1380 328 338 26 60 chr11 104321850 104322001 -17521855 + B1F2 SINE Alu 4 149 0 8 1380 688 251 117 5 chr11 104322019 104322207 -17521649 + B3 SINE B2 8 216 0 8 1380 486 269 0 9 chr11 104322253 104322362 -17521494 + PB1D9 SINE Alu 1 108 -12 8 1380 225 0 0 0 chr11 104322362 104322387 -17521469 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 8 1380 538 219 0 0 chr11 104322389 104322485 -17521371 + B1_Mur2 SINE Alu 1 96 -53 8 1380 645 290 36 36 chr11 104322485 104322678 -17521178 + B3A SINE B2 6 198 0 8 1380 396 205 39 0 chr11 104322791 104322869 -17520987 + B1_Mus1 SINE Alu 2 82 -66 8 1380 244 264 38 0 chr11 104323380 104323433 -17520423 + ID4_ SINE ID 10 64 -19 8 1380 224 339 0 0 chr11 104323455 104323517 -17520339 + BC1_Mm scRNA scRNA 20 81 -71 8 1380 364 257 39 19 chr11 104323675 104323778 -17520078 + B1F SINE Alu 38 142 -7 8 1380 24 77 0 0 chr11 104323846 104323898 -17519958 + AT_rich Low_complexity Low_complexity 1 52 0 8 1380 1330 80 21 5 chr11 104324119 104324308 -17519548 + B2_Mm1t SINE B2 2 193 0 8 1380 502 227 70 49 chr11 104324335 104324520 -17519336 + B3A SINE B2 4 192 -6 8 1380 553 225 0 35 chr11 104324879 104324994 -17518862 + RSINE1 SINE B4 4 114 -51 8 1380 311 381 93 25 chr11 104325102 104325339 -17518517 - L2 LINE L2 -851 2568 2316 8 1380 786 234 0 0 chr11 104325554 104325695 -17518161 - B1_Mur1 SINE Alu -7 142 2 8 1380 483 242 50 0 chr11 104325769 104325868 -17517988 + B1F1 SINE Alu 19 122 -27 8 1380 674 256 35 57 chr11 104325910 104326138 -17517718 + ID_B1 SINE B4 2 224 0 8 1380 1415 70 27 0 chr11 104326146 104326332 -17517524 + B2_Mm2 SINE B2 1 191 -4 8 1380 558 196 120 47 chr11 104326358 104326508 -17517348 + B3A SINE B2 37 197 -1 8 1380 299 208 4 30 chr11 104326550 104326628 -17517228 + B1_Mur1 SINE Alu 56 149 0 8 1380 486 133 256 0 chr11 104326637 104326727 -17517129 + B1_Mus1 SINE Alu 30 142 -6 8 1380 207 244 0 0 chr11 104326733 104326774 -17517082 + GA-rich Low_complexity Low_complexity 2 42 0 8 1380 514 216 72 0 chr11 104326907 104327004 -17516852 + PB1D10 SINE Alu 13 116 -1 8 1380 3121 36 15 3 chr11 104327538 104327927 -17515929 + L1Md_F2 LINE L1 6188 6581 -1 8 1380 370 307 66 0 chr11 104328753 104328890 -17514966 + B1F2 SINE Alu 3 148 -1 8 1380 520 206 60 22 chr11 104329176 104329310 -17514546 + B1_Mur1 SINE Alu 2 140 -9 8 1380 229 286 13 0 chr11 104330352 104330429 -17513427 + (CCCCG)n Simple_repeat Simple_repeat 2 79 0 8 1380 21 36 0 0 chr11 104330489 104330517 -17513339 + GC_rich Low_complexity Low_complexity 1 28 0 8 1380 22 35 0 0 chr11 104330595 104330624 -17513232 + GC_rich Low_complexity Low_complexity 1 29 0 8 1380 209 30 61 0 chr11 104330899 104330932 -17512924 + (TCTCTG)n Simple_repeat Simple_repeat 3 37 0 8 1380 401 290 40 10 chr11 104331462 104331563 -17512293 + PB1D10 SINE Alu 1 104 -13 8 1380 205 88 29 0 chr11 104331781 104331815 -17512041 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1380 582 272 19 24 chr11 104332169 104332380 -17511476 - B3 SINE B2 -6 210 1 8 1380 25 31 0 0 chr11 104332459 104332491 -17511365 + AT_rich Low_complexity Low_complexity 1 32 0 8 1380 410 272 119 40 chr11 104332523 104332699 -17511157 - Charlie4 DNA MER1_type -1664 297 108 8 1380 210 37 0 0 chr11 104332753 104332780 -17511076 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1380 358 229 83 0 chr11 104333137 104333233 -17510623 + PB1D10 SINE Alu 1 104 -13 8 1381 917 181 119 0 chr11 104333475 104333668 -17510188 + B3 SINE B2 1 216 0 8 1381 930 142 14 0 chr11 104333856 104334004 -17509852 - B1_Mur4 SINE Alu 0 150 1 8 1381 223 333 25 0 chr11 104334039 104334120 -17509736 + BC1_Mm scRNA scRNA 11 93 -59 8 1381 282 358 62 11 chr11 104334530 104334708 -17509148 + L1M5 LINE L1 5563 5749 -491 8 1381 230 162 60 36 chr11 104334750 104334833 -17509023 + (GTTTG)n Simple_repeat Simple_repeat 1 85 0 8 1381 385 316 17 9 chr11 104334846 104334976 -17508880 - B1F SINE Alu -1 148 18 8 1381 1345 74 36 26 chr11 104334992 104335185 -17508671 - B2_Mm2 SINE B2 0 195 1 8 1381 357 82 0 0 chr11 104335185 104335234 -17508622 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 8 1381 230 232 0 35 chr11 104335243 104335301 -17508555 - RSINE1 SINE B4 -8 157 102 8 1381 230 287 41 31 chr11 104335306 104335403 -17508453 + RSINE1 SINE B4 44 141 -24 8 1381 542 155 10 10 chr11 104335441 104335545 -17508311 + PB1D9 SINE Alu 5 108 -12 8 1381 30 0 0 0 chr11 104335623 104335653 -17508203 + AT_rich Low_complexity Low_complexity 1 30 0 8 1381 1086 81 0 0 chr11 104335657 104335793 -17508063 + B1_Mus1 SINE Alu 3 138 -10 8 1381 210 37 0 0 chr11 104335793 104335820 -17508036 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1381 2547 149 41 26 chr11 104335848 104336338 -17507518 - RMER19B LTR ERVK -404 498 2 8 1381 832 208 45 0 chr11 104336349 104336527 -17507329 + B3 SINE B2 1 186 -30 8 1381 797 245 76 0 chr11 104336565 104336749 -17507107 - B3 SINE B2 -4 212 15 8 1381 478 292 0 0 chr11 104337066 104337179 -17506677 + B3A SINE B2 2 114 -84 8 1381 1306 90 11 0 chr11 104337234 104337411 -17506445 + B2_Mm1t SINE B2 1 179 -14 8 1381 292 46 448 0 chr11 104337443 104337543 -17506313 + B2_Mm2 SINE B2 47 191 -4 8 1381 33 0 0 0 chr11 104337566 104337599 -17506257 + AT_rich Low_complexity Low_complexity 1 33 0 8 1381 523 122 12 0 chr11 104337613 104337695 -17506161 + B3 SINE B2 1 83 -133 8 1381 252 0 0 0 chr11 104338099 104338127 -17505729 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 8 1381 312 70 0 0 chr11 104338299 104338342 -17505514 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1381 393 290 72 57 chr11 104338350 104338544 -17505312 - B3A SINE B2 0 198 2 8 1381 1099 66 0 0 chr11 104338712 104338849 -17505007 + B1_Mm SINE Alu 1 137 -10 8 1381 230 0 33 0 chr11 104338849 104338879 -17504977 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 8 1381 449 188 82 0 chr11 104338972 104339057 -17504799 + B1_Mus2 SINE Alu 1 92 -55 8 1381 305 276 11 22 chr11 104338982 104339071 -17504785 + MT2B LTR ERVL 175 262 -339 8 1381 616 219 184 49 chr11 104339073 104339318 -17504538 - B4A SINE B4 -10 282 5 8 1381 620 129 40 17 chr11 104339339 104339512 -17504344 + (TG)n Simple_repeat Simple_repeat 2 178 0 8 1381 316 267 0 26 chr11 104339526 104339603 -17504253 - RSINE1 SINE B4 0 165 91 8 1381 993 234 89 22 chr11 104339702 104340016 -17503840 - MTD LTR MaLR 0 419 85 8 1381 192 77 0 0 chr11 104340028 104340054 -17503802 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1381 908 132 27 14 chr11 104340058 104340204 -17503652 - B1_Mur4 SINE Alu -1 149 2 8 1381 825 232 183 12 chr11 104340296 104340536 -17503320 + B4A SINE B4 1 281 -11 8 1381 279 0 0 0 chr11 104340614 104340645 -17503211 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 1381 416 177 177 0 chr11 104340719 104340815 -17503041 + PB1D9 SINE Alu 1 113 -7 8 1381 2231 198 15 141 chr11 104341064 104341647 -17502209 + RLTR18B LTR ERVK 1 510 -2 8 1381 2433 134 241 30 chr11 104341747 104342315 -17501541 - RMER6C LTR ERVK 0 690 3 8 1381 417 270 121 45 chr11 104342433 104342565 -17501291 + RSINE1 SINE B4 11 152 -13 8 1381 189 0 0 0 chr11 104342568 104342589 -17501267 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1381 441 0 0 0 chr11 104342589 104342637 -17501219 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1381 1496 68 0 0 chr11 104342779 104342971 -17500885 - B2_Mm1a SINE B2 -1 192 1 8 1381 324 346 63 19 chr11 104343056 104343215 -17500641 - RMER4A LTR ERVK -35 431 266 8 1381 530 213 56 0 chr11 104343230 104343338 -17500518 - MurERV4_19-int LTR ERVK -409 5371 5258 8 1381 1180 49 7 7 chr11 104343600 104343745 -17500111 + B1_Mm SINE Alu 2 146 -1 8 1381 657 0 0 0 chr11 104343747 104343820 -17500036 + (GAA)n Simple_repeat Simple_repeat 2 74 0 8 1381 380 229 0 0 chr11 104343971 104344041 -17499815 + B3A SINE B2 69 138 -60 8 1381 387 0 0 0 chr11 104344048 104344091 -17499765 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1381 571 255 62 47 chr11 104344573 104344766 -17499090 - B3 SINE B2 -1 215 20 8 1381 343 224 0 73 chr11 104344779 104344861 -17498995 - PB1D7 SINE Alu 0 120 45 8 1381 1094 158 138 29 chr11 104344949 104345261 -17498595 + ORR1B1 LTR MaLR 1 321 -8 8 1381 656 226 161 52 chr11 104345267 104345515 -17498341 + B4A SINE B4 1 275 -17 9 1381 285 183 0 0 chr11 104345532 104345592 -17498264 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1381 411 264 82 89 chr11 104345592 104345750 -17498106 - RSINE1 SINE B4 0 165 9 9 1381 310 352 47 5 chr11 104345757 104345971 -17497885 - L1MC4a LINE L1 -1990 5892 5670 9 1381 554 262 0 47 chr11 104345997 104346125 -17497731 + B3 SINE B2 36 157 -59 9 1381 653 264 6 44 chr11 104346144 104346326 -17497530 - ID_B1 SINE B4 -45 179 5 9 1381 316 170 0 0 chr11 104346304 104346357 -17497499 - B1_Mus1 SINE Alu -89 59 7 9 1381 513 76 0 0 chr11 104346367 104346446 -17497410 + (TC)n Simple_repeat Simple_repeat 1 79 0 9 1381 228 67 0 0 chr11 104346446 104346476 -17497380 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1381 877 129 14 21 chr11 104346478 104346621 -17497235 - B1_Mur3 SINE Alu -7 142 1 9 1381 438 276 113 7 chr11 104346732 104346874 -17496982 + B4A SINE B4 134 290 -2 9 1381 373 165 21 0 chr11 104346875 104346972 -17496884 + (CA)n Simple_repeat Simple_repeat 2 100 0 9 1381 2075 184 101 72 chr11 104347015 104347799 -17496057 + RMER19B LTR ERVK 1 902 0 9 1381 692 240 0 0 chr11 104347799 104347944 -17495912 + B3A SINE B2 12 156 -42 9 1381 345 24 0 0 chr11 104347960 104348002 -17495854 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1381 28 0 0 0 chr11 104348158 104348186 -17495670 + AT_rich Low_complexity Low_complexity 1 28 0 9 1381 920 155 191 11 chr11 104348186 104348369 -17495487 - B3 SINE B2 0 216 1 9 1381 861 187 113 5 chr11 104348380 104348574 -17495282 - B3 SINE B2 0 216 2 9 1381 951 70 0 0 chr11 104348576 104348704 -17495152 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 9 1381 771 198 0 0 chr11 104348704 104348830 -17495026 - B1_Mur1 SINE Alu -16 133 8 9 1381 217 163 0 20 chr11 104348847 104348878 -17494978 + T-rich Low_complexity Low_complexity 24 54 0 9 1381 1141 82 7 0 chr11 104348878 104349024 -17494832 - B1_Mus2 SINE Alu 0 147 1 9 1381 217 163 0 20 chr11 104349024 104349042 -17494814 + T-rich Low_complexity Low_complexity 6 23 0 9 1381 1132 143 6 6 chr11 104349144 104349320 -17494536 + B2_Mm1t SINE B2 3 178 -15 9 1381 351 0 0 0 chr11 104349320 104349359 -17494497 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 9 1381 663 251 54 49 chr11 104349359 104349431 -17494425 + Lx6 LINE L1 7070 7134 -326 9 1381 1425 65 22 0 chr11 104349431 104349615 -17494241 - B2_Mm2 SINE B2 -7 188 1 9 1381 663 251 54 49 chr11 104349615 104349726 -17494130 + Lx6 LINE L1 7135 7254 -206 9 1381 847 171 31 41 chr11 104349726 104349921 -17493935 - B2_Mm2 SINE B2 0 195 3 9 1381 433 84 36 0 chr11 104349927 104350010 -17493846 + (TTTTTG)n Simple_repeat Simple_repeat 4 89 0 9 1381 1252 48 0 0 chr11 104350011 104350157 -17493699 - B1_Mus2 SINE Alu -1 146 1 9 1381 859 158 82 5 chr11 104350169 104350353 -17493503 + Lx6 LINE L1 7262 7459 -1 9 1381 310 333 0 22 chr11 104350588 104350772 -17493084 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1381 386 188 10 0 chr11 104350822 104350923 -17492933 + (TG)n Simple_repeat Simple_repeat 1 102 0 9 1381 327 208 36 72 chr11 104350931 104351014 -17492842 - B4 SINE B4 0 292 213 9 1381 530 182 203 59 chr11 104351022 104351209 -17492647 - B3 SINE B2 0 216 3 9 1381 256 254 0 45 chr11 104351212 104351278 -17492578 - B4 SINE B4 -62 230 168 9 1381 815 37 9 0 chr11 104351278 104351385 -17492471 + (CA)n Simple_repeat Simple_repeat 2 109 0 9 1381 283 167 0 20 chr11 104351419 104351483 -17492373 - PB1 SINE Alu -3 124 58 9 1381 308 243 56 112 chr11 104351484 104351609 -17492247 - B4 SINE B4 -172 120 3 9 1381 347 234 20 50 chr11 104351617 104351716 -17492140 - ID_B1 SINE B4 0 224 129 9 1381 1872 180 120 13 chr11 104351922 104352372 -17491484 - RLTR19C LTR ERVK -1 505 8 9 1381 524 124 34 0 chr11 104352404 104352493 -17491363 - B2_Mm2 SINE B2 -101 94 3 9 1381 24 77 0 0 chr11 104352559 104352611 -17491245 + AT_rich Low_complexity Low_complexity 1 52 0 9 1381 3575 42 28 0 chr11 104353397 104353821 -17490035 - RLTR10C LTR ERVK 0 436 1 9 1381 7355 44 16 53 chr11 104353821 104354749 -17489107 - MMERVK10C-int LTR ERVK 0 7581 6690 9 1381 243 0 0 0 chr11 104354749 104354776 -17489080 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1381 7355 44 16 53 chr11 104354776 104354814 -17489042 - MMERVK10C-int LTR ERVK -892 6689 6652 9 1381 8066 37 0 0 chr11 104354805 104355731 -17488125 - MMERVK10C-int LTR ERVK -1771 5810 4885 9 1381 2659 45 0 2 chr11 104355730 104356269 -17487587 - MMERVK10C-int LTR ERVK -3734 3847 3512 9 1381 344 45 23 0 chr11 104356272 104356316 -17487540 - MMERVK10C-int LTR ERVK -6405 137 93 9 1381 284 138 55 44 chr11 104356316 104356407 -17487449 + CT-rich Low_complexity Low_complexity 3 94 0 9 1381 1479 39 0 17 chr11 104356499 104356680 -17487176 - MMERVK10C-int LTR ERVK -7403 178 1 9 1381 417 0 0 0 chr11 104356697 104356748 -17487108 - RLTR10C LTR ERVK -385 51 1 9 1381 469 181 43 0 chr11 104356780 104356874 -17486982 - ORR1D1 LTR MaLR -85 289 192 9 1381 344 224 39 58 chr11 104356859 104356963 -17486893 - RLTR12A LTR ERVK -183 385 284 9 1381 529 170 209 46 chr11 104356952 104357145 -17486711 + MT2A LTR ERVL 99 414 -187 9 1381 201 169 55 27 chr11 104357151 104357224 -17486632 + (TA)n Simple_repeat Simple_repeat 2 76 0 9 1381 511 139 10 10 chr11 104357261 104357363 -17486493 + (TA)n Simple_repeat Simple_repeat 1 102 0 9 1381 394 207 78 43 chr11 104358054 104358170 -17485686 + PB1D9 SINE Alu 1 120 0 9 1381 680 206 57 13 chr11 104358173 104358330 -17485526 - RSINE1 SINE B4 0 165 2 9 1381 495 73 0 0 chr11 104358345 104358413 -17485443 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 9 1381 503 235 269 6 chr11 104358431 104358598 -17485258 + B3 SINE B2 3 213 -3 9 1381 1772 185 221 77 chr11 104358674 104359208 -17484648 + RMER19C LTR ERVK 1 611 0 9 1381 268 125 17 51 chr11 104359210 104359269 -17484587 - RMER19C LTR ERVK -554 57 1 9 1381 660 193 152 39 chr11 104359561 104359739 -17484117 + B3A SINE B2 1 198 0 9 1381 180 0 0 0 chr11 104360057 104360077 -17483779 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 9 1381 1116 192 9 9 chr11 104360093 104360309 -17483547 + B3 SINE B2 1 216 0 9 1381 913 148 7 0 chr11 104360310 104360452 -17483404 + B1_Mus2 SINE Alu 2 144 -3 9 1381 23 0 0 0 chr11 104360452 104360475 -17483381 + AT_rich Low_complexity Low_complexity 1 23 0 9 1381 547 280 25 25 chr11 104360937 104361098 -17482758 + RSINE1 SINE B4 1 161 -4 9 1381 472 248 26 16 chr11 104361129 104361260 -17482596 + PB1D10 SINE Alu 11 148 0 9 1381 334 268 56 42 chr11 104361262 104361294 -17482562 + ID_B1 SINE B4 70 215 -9 9 1381 380 243 71 9 chr11 104361294 104361406 -17482450 + B1F SINE Alu 22 140 -9 9 1381 385 222 128 9 chr11 104361424 104361533 -17482323 + B1_Mur4 SINE Alu 28 149 -1 9 1381 274 194 87 0 chr11 104361538 104361641 -17482215 + (CAAAC)n Simple_repeat Simple_repeat 3 114 0 9 1381 267 283 50 0 chr11 104361653 104361713 -17482143 + ID4 SINE ID 10 72 -11 9 1381 332 245 55 98 chr11 104361736 104361899 -17481957 + B4A SINE B4 15 170 -122 9 1381 320 313 26 17 chr11 104361897 104362014 -17481842 + B3A SINE B2 64 181 -17 9 1381 391 183 229 16 chr11 104362021 104362143 -17481713 - B1_Mur2 SINE Alu 0 149 2 9 1381 820 93 279 26 chr11 104362435 104362589 -17481267 - B2_Mm1t SINE B2 0 193 1 9 1381 388 71 18 0 chr11 104362620 104362676 -17481180 - B1_Mus2 SINE Alu -81 66 10 9 1381 2255 138 130 9 chr11 104362680 104363126 -17480730 + RLTR12A LTR ERVK 10 509 -59 9 1381 353 287 104 7 chr11 104363142 104363286 -17480570 - ID_B1 SINE B4 -63 161 4 9 1381 302 246 390 10 chr11 104363403 104363608 -17480248 - B4A SINE B4 -6 286 4 9 1381 23 0 0 0 chr11 104363894 104363917 -17479939 + AT_rich Low_complexity Low_complexity 1 23 0 9 1381 234 241 0 0 chr11 104364590 104364644 -17479212 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1381 219 178 0 62 chr11 104364759 104364807 -17479049 + A-rich Low_complexity Low_complexity 5 49 0 9 1381 21 0 0 0 chr11 104365284 104365305 -17478551 + AT_rich Low_complexity Low_complexity 1 21 0 9 1381 2339 85 56 19 chr11 104367224 104367584 -17476272 - L1_Mus4 LINE L1 -2 6634 6262 9 1381 607 158 66 16 chr11 104367592 104367714 -17476142 - B1_Mus2 SINE Alu -3 144 17 9 1381 607 242 29 35 chr11 104367793 104367964 -17475892 - ID_B1 SINE B4 -5 219 50 9 1381 329 269 65 0 chr11 104368919 104369012 -17474844 - PB1D10 SINE Alu -16 101 3 9 1381 405 244 0 0 chr11 104369265 104369347 -17474509 + B1_Mus2 SINE Alu 15 96 -51 9 1381 355 322 13 59 chr11 104369395 104369547 -17474309 + B3A SINE B2 1 145 -53 9 1381 507 195 115 0 chr11 104369470 104369583 -17474273 - B1_Mus1 SINE Alu -21 127 2 9 1381 390 91 377 0 chr11 104369864 104369970 -17473886 + B2_Mm2 SINE B2 3 148 -47 9 1381 571 37 0 36 chr11 104370006 104370090 -17473766 - B1_Mur4 SINE Alu 0 150 70 9 1381 245 293 53 68 chr11 104370160 104370292 -17473564 - ID_B1 SINE B4 -92 132 3 9 1381 231 349 47 0 chr11 104370306 104370412 -17473444 - PB1D10 SINE Alu -6 111 1 9 1381 252 296 12 47 chr11 104370607 104370692 -17473164 + L2c LINE L2 3294 3375 -12 9 1381 394 261 86 17 chr11 104370912 104371029 -17472827 - B1F SINE Alu -1 148 24 9 1381 508 125 0 12 chr11 104371153 104371234 -17472622 - B1_Mur2 SINE Alu 0 149 70 9 1381 1282 83 61 0 chr11 104371240 104371420 -17472436 - B2_Mm2 SINE B2 0 195 5 9 1381 1815 200 86 84 chr11 104371669 104372204 -17471652 - RLTR20A LTR ERVK 0 541 6 9 1381 704 139 130 62 chr11 104372205 104372397 -17471459 - MYSERV16_I-int LTR ERVK -5 2321 2117 9 1381 464 170 259 0 chr11 104372519 104372729 -17471127 + ORR1D1 LTR MaLR 63 361 -13 9 1381 21 0 0 0 chr11 104372923 104372944 -17470912 + AT_rich Low_complexity Low_complexity 1 21 0 9 1381 1212 42 0 0 chr11 104372953 104373097 -17470759 + B1_Mus1 SINE Alu 2 145 -3 9 1381 720 0 0 0 chr11 104373230 104373310 -17470546 + (TG)n Simple_repeat Simple_repeat 1 80 0 9 1381 554 115 177 0 chr11 104373310 104373406 -17470450 - B3A SINE B2 -85 113 1 9 1381 454 229 63 6 chr11 104373671 104373791 -17470065 + B3A SINE B2 59 184 -32 9 1381 180 0 0 0 chr11 104373791 104373811 -17470045 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 1381 391 273 84 21 chr11 104373811 104373838 -17470018 + B3 SINE B2 185 216 0 9 1381 227 281 53 83 chr11 104373886 104374018 -17469838 - ID_B1 SINE B4 -18 206 79 1 1381 249 33 0 0 chr11 104374639 104374669 -17469187 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 1 1381 483 192 19 9 chr11 104374671 104374776 -17469080 - PB1D9 SINE Alu -13 107 2 1 1381 21 0 0 0 chr11 104374777 104374798 -17469058 + AT_rich Low_complexity Low_complexity 1 21 0 1 1381 246 266 62 0 chr11 104374798 104374862 -17468994 - PB1 SINE Alu -31 96 29 1 1381 877 158 13 33 chr11 104375073 104375224 -17468632 - B1_Mur4 SINE Alu 0 150 3 1 1381 1433 62 5 30 chr11 104375262 104375460 -17468396 - B2_Mm1t SINE B2 0 193 1 1 1381 271 312 19 104 chr11 104375880 104375966 -17467890 - B1F SINE Alu -3 146 68 1 1381 906 118 20 27 chr11 104375966 104376114 -17467742 - B1_Mus1 SINE Alu 0 148 2 1 1381 271 312 19 104 chr11 104376114 104376181 -17467675 - B1F SINE Alu -82 67 6 1 1381 367 273 23 83 chr11 104376115 104376247 -17467609 - ID_B1 SINE B4 -69 155 32 1 1381 755 191 44 6 chr11 104376245 104376403 -17467453 + MTB_Mm LTR MaLR 244 407 0 1 1381 228 216 20 0 chr11 104376491 104376542 -17467314 + RSINE1 SINE B4 21 72 -93 1 1381 247 279 44 127 chr11 104377085 104377266 -17466590 - B4 SINE B4 -119 173 8 1 1381 649 187 21 41 chr11 104377433 104377578 -17466278 - B1_Mus2 SINE Alu -5 142 1 1 1381 245 319 43 34 chr11 104377580 104377697 -17466159 - RSINE1 SINE B4 -46 119 2 1 1381 216 0 0 0 chr11 104377731 104377755 -17466101 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1381 248 293 53 13 chr11 104378357 104378433 -17465423 - ID_B1 SINE B4 -4 220 142 1 1381 216 272 11 69 chr11 104378551 104378638 -17465218 + ID4_ SINE ID 1 82 -1 1 1381 1407 102 0 5 chr11 104379041 104379237 -17464619 + B2_Mm2 SINE B2 1 195 0 1 1381 507 258 192 12 chr11 104379298 104379459 -17464397 + B3 SINE B2 10 199 -17 1 1381 264 213 0 0 chr11 104379475 104379536 -17464320 + GA-rich Low_complexity Low_complexity 2 62 0 1 1381 447 245 133 0 chr11 104379892 104380035 -17463821 - B3A SINE B2 -36 162 1 1 1381 319 250 0 38 chr11 104380264 104380343 -17463513 + B1F1 SINE Alu 74 149 0 1 1381 386 234 26 61 chr11 104380343 104380457 -17463399 + PB1D9 SINE Alu 1 110 -10 1 1381 645 224 71 20 chr11 104380596 104380792 -17463064 + ID_B1 SINE B4 17 222 -2 1 1381 380 179 330 1 chr11 104380796 104380903 -17462953 + B1_Mur1 SINE Alu 3 146 -1 1 1381 1553 47 5 0 chr11 104380993 104381183 -17462673 - B2_Mm1a SINE B2 -1 192 2 1 1381 1670 181 48 37 chr11 104381307 104381567 -17462289 + MTC LTR MaLR 44 316 -105 1 1381 960 75 181 30 chr11 104381567 104381733 -17462123 - B2_Mm2 SINE B2 0 195 5 1 1381 1670 181 48 37 chr11 104381733 104381846 -17462010 + MTC LTR MaLR 317 421 0 1 1381 29 47 0 0 chr11 104381861 104381904 -17461952 + AT_rich Low_complexity Low_complexity 1 43 0 1 1381 26 50 0 0 chr11 104382361 104382401 -17461455 + AT_rich Low_complexity Low_complexity 1 40 0 1 1381 338 254 190 24 chr11 104382404 104382566 -17461290 + B3 SINE B2 15 193 -2 1 1381 383 248 129 0 chr11 104383074 104383175 -17460681 - PB1D7 SINE Alu -1 119 6 1 1381 230 325 106 31 chr11 104383486 104383740 -17460116 - L1MD2 LINE L1 -158 6201 5929 1 1381 338 252 36 45 chr11 104383811 104383923 -17459933 + PB1D10 SINE Alu 7 117 0 1 1381 395 357 6 60 chr11 104384298 104384480 -17459376 + B3 SINE B2 3 174 -42 1 1381 804 238 30 35 chr11 104384751 104384951 -17458905 - B3 SINE B2 -5 211 13 1 1381 598 255 27 7 chr11 104384972 104385118 -17458738 - B1_Mur1 SINE Alu 0 149 1 1 1381 652 225 14 40 chr11 104385141 104385289 -17458567 - B1_Mur2 SINE Alu 0 149 6 1 1381 780 246 26 31 chr11 104385293 104385486 -17458370 - B3A SINE B2 -6 192 1 1 1381 242 355 55 27 chr11 104385518 104385628 -17458228 + PB1D7 SINE Alu 1 113 -7 1 1381 678 276 36 10 chr11 104385753 104385947 -17457909 + ID_B1 SINE B4 17 215 -9 1 1381 703 291 97 70 chr11 104386000 104386358 -17457498 - MTE2b LTR MaLR -2 377 7 1 1381 360 269 106 15 chr11 104386405 104386537 -17457319 - B3A SINE B2 -41 157 14 1 1381 502 214 118 37 chr11 104386966 104387102 -17456754 + B1_Mur2 SINE Alu 2 148 -1 1 1381 517 174 211 0 chr11 104387102 104387211 -17456645 + B1_Mm SINE Alu 4 135 -12 1 1381 1058 69 14 14 chr11 104388951 104389098 -17454758 - B1_Mus2 SINE Alu 0 147 1 1 1381 645 308 38 19 chr11 104389170 104389382 -17454474 - ID_B1 SINE B4 -3 221 6 1 1381 23 33 0 0 chr11 104390237 104390267 -17453589 + AT_rich Low_complexity Low_complexity 1 30 0 1 1381 244 276 52 0 chr11 104390274 104390332 -17453524 + RSINE1 SINE B4 1 61 -104 1 1381 847 150 13 13 chr11 104390427 104390576 -17453280 + B1_Mur4 SINE Alu 2 150 0 1 1381 231 180 0 39 chr11 104390577 104390629 -17453227 + A-rich Low_complexity Low_complexity 2 51 0 1 1381 447 301 20 14 chr11 104390988 104391136 -17452720 + B4A SINE B4 39 187 -105 1 1381 1271 27 0 0 chr11 104391592 104391739 -17452117 - B1_Mm SINE Alu 0 147 1 1 1381 544 164 213 0 chr11 104391995 104392117 -17451739 - B1_Mus1 SINE Alu 0 148 1 1 1381 490 258 153 0 chr11 104392259 104392383 -17451473 - B1_Mur1 SINE Alu -6 143 1 1 1381 509 110 0 12 chr11 104392397 104392480 -17451376 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 1 1381 24 0 0 0 chr11 104393170 104393194 -17450662 + AT_rich Low_complexity Low_complexity 1 24 0 1 1381 1089 82 19 0 chr11 104393237 104393395 -17450461 + B2_Mm2 SINE B2 35 195 0 1 1381 468 232 129 35 chr11 104393389 104393505 -17450351 - B3 SINE B2 -82 134 8 1 1381 259 127 16 16 chr11 104393516 104393580 -17450276 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1381 288 0 0 0 chr11 104393584 104393616 -17450240 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1381 628 211 114 0 chr11 104393649 104393772 -17450084 - B1_Mur3 SINE Alu -12 137 1 1 1381 1502 64 37 0 chr11 104393906 104394094 -17449762 + B2_Mm2 SINE B2 1 195 0 1 1381 276 273 76 115 chr11 104394129 104394286 -17449570 - RSINE1 SINE B4 -13 152 2 1 1381 638 208 45 23 chr11 104394423 104394556 -17449300 - B1_Mur2 SINE Alu -12 137 2 1 1381 918 182 151 18 chr11 104394617 104395023 -17448833 + RLTR11A2 LTR ERVK 8 527 0 1 1381 1032 110 0 14 chr11 104395136 104395284 -17448572 + B1_Mus1 SINE Alu 1 146 -2 1 1381 302 301 0 0 chr11 104395725 104395798 -17448058 - ID4 SINE ID -3 80 8 1 1381 273 293 98 0 chr11 104396368 104396450 -17447406 + PB1D7 SINE Alu 10 99 -21 1 1381 297 75 0 0 chr11 104396450 104396490 -17447366 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1381 216 0 0 0 chr11 104396591 104396615 -17447241 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1381 594 261 42 0 chr11 104396780 104396922 -17446934 + RSINE1 SINE B4 4 151 -14 1 1381 1185 112 45 0 chr11 104396943 104397121 -17446735 + B2_Mm2 SINE B2 1 186 -9 1 1381 312 283 35 26 chr11 104397145 104397261 -17446595 + PB1D10 SINE Alu 1 117 0 1 1381 619 276 84 23 chr11 104397286 104397501 -17446355 + B4 SINE B4 61 288 -4 1 1381 714 93 0 0 chr11 104397519 104397627 -17446229 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1381 271 286 88 104 chr11 104397680 104397805 -17446051 + B3A SINE B2 76 198 0 1 1381 200 139 0 27 chr11 104398064 104398101 -17445755 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1381 331 227 150 41 chr11 104398106 104398253 -17445603 - RSINE1 SINE B4 0 165 3 1 1381 366 305 45 7 chr11 104398283 104398441 -17445415 - B3A SINE B2 -44 172 2 1 1381 1196 68 0 0 chr11 104398572 104398720 -17445136 - B1_Mus1 SINE Alu 0 148 1 1 1381 21 0 0 0 chr11 104398896 104398917 -17444939 + AT_rich Low_complexity Low_complexity 1 21 0 1 1381 447 137 0 0 chr11 104398990 104399063 -17444793 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1381 565 160 20 0 chr11 104399585 104399685 -17444171 - B1_Mur1 SINE Alu -5 144 43 1 1381 861 110 15 0 chr11 104399836 104399972 -17443884 - B1_Mus2 SINE Alu 0 147 10 1 1381 392 268 46 86 chr11 104399838 104399989 -17443867 - B4 SINE B4 -69 223 79 1 1381 657 249 17 23 chr11 104400293 104400466 -17443390 - B3 SINE B2 -6 210 39 1 1381 346 174 73 101 chr11 104400698 104400807 -17443049 + MT2B LTR ERVL 158 263 -338 1 1381 682 172 31 8 chr11 104400715 104400844 -17443012 + B1_Mur4 SINE Alu 19 150 0 1 1381 611 284 75 0 chr11 104401189 104401390 -17442466 - ID_B1 SINE B4 -7 217 2 1 1381 885 260 79 8 chr11 104401416 104401668 -17442188 - B4A SINE B4 -22 270 1 1 1381 653 232 96 18 chr11 104401694 104401861 -17441995 - B3 SINE B2 -1 215 36 1 1381 625 262 62 0 chr11 104402287 104402447 -17441409 + B3A SINE B2 2 171 -27 1 1381 490 189 53 26 chr11 104402762 104402876 -17440980 + PB1D10 SINE Alu 1 117 0 1 1381 568 271 71 76 chr11 104402888 104403112 -17440744 + B4 SINE B4 2 224 -68 1 1381 351 96 0 0 chr11 104403112 104403164 -17440692 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 1 1381 212 241 18 36 chr11 104403382 104403438 -17440418 + RSINE1 SINE B4 12 66 -99 1 1381 481 245 56 61 chr11 104403511 104403707 -17440149 + L1_Rod LINE L1 4804 4998 -849 1 1381 333 265 16 49 chr11 104403711 104403834 -17440022 - RLTR25B LTR ERVK -468 560 442 1 1381 692 130 19 0 chr11 104403733 104403841 -17440015 - B1_Mur3 SINE Alu -6 143 34 1 1381 285 122 0 0 chr11 104403937 104403967 -17439889 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1381 1260 41 0 0 chr11 104403967 104404114 -17439742 - B1_Mm SINE Alu 0 147 1 1 1381 285 122 0 0 chr11 104404114 104404132 -17439724 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1381 347 291 182 0 chr11 104404163 104404328 -17439528 + L1M2 LINE L1 5159 5353 -790 1 1381 1428 157 210 47 chr11 104404417 104404604 -17439252 + L1_Mus4 LINE L1 5590 5765 -1293 1 1381 1017 43 58 0 chr11 104404604 104404742 -17439114 + B1_Mm SINE Alu 2 147 0 1 1381 1428 73 243 8 chr11 104404742 104404925 -17438931 + L1_Mus4 LINE L1 5766 6001 -635 1 1381 607 103 33 49 chr11 104404926 104405048 -17438808 + Lx LINE L1 6534 6653 -1 1 1381 265 315 9 0 chr11 104405052 104405160 -17438696 + Lx9 LINE L1 7217 7325 -319 1 1381 243 0 0 0 chr11 104405184 104405211 -17438645 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1381 777 107 18 0 chr11 104405214 104405326 -17438530 - PB1D9 SINE Alu -6 114 1 1 1381 310 199 76 74 chr11 104405361 104405456 -17438400 + Lx7 LINE L1 5695 5823 -474 1 1381 227 219 15 30 chr11 104405479 104405545 -17438311 + Lx7 LINE L1 5759 5823 -1873 1 1381 209 161 0 0 chr11 104406178 104406209 -17437647 + polypurine Low_complexity Low_complexity 3 33 0 1 1381 287 177 32 0 chr11 104406678 104406740 -17437116 - B4A SINE B4 -13 279 216 1 1381 326 232 65 94 chr11 104406777 104406886 -17436970 - B4A SINE B4 0 292 189 1 1381 360 0 0 0 chr11 104406886 104406926 -17436930 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1381 326 232 65 94 chr11 104406926 104406954 -17436902 - B4A SINE B4 -104 188 159 1 1381 21 0 0 0 chr11 104407237 104407258 -17436598 + AT_rich Low_complexity Low_complexity 1 21 0 1 1381 830 214 5 62 chr11 104407259 104407453 -17436403 + B3A SINE B2 1 183 -15 1 1381 261 304 63 0 chr11 104407531 104407610 -17436246 - ID_B1 SINE B4 -51 173 90 1 1381 254 288 0 0 chr11 104407559 104407618 -17436238 - B1F2 SINE Alu -90 59 1 1 1381 341 259 68 51 chr11 104407627 104407745 -17436111 - PB1D7 SINE Alu 0 120 1 1 1381 536 306 0 7 chr11 104407999 104408144 -17435712 - ID_B1 SINE B4 -1 223 80 1 1381 598 203 40 24 chr11 104408654 104408780 -17435076 - B1_Mur1 SINE Alu -20 129 2 1 1381 336 288 9 26 chr11 104409093 104409207 -17434649 - PB1D10 SINE Alu 0 117 6 1 1381 253 217 0 0 chr11 104409341 104409387 -17434469 + RSINE1 SINE B4 1 46 -119 1 1381 473 187 0 42 chr11 104409933 104410028 -17433828 - ID_B1 SINE B4 -6 218 128 1 1381 180 0 0 0 chr11 104412354 104412374 -17431482 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1381 251 319 0 14 chr11 104412858 104412928 -17430928 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 1 1381 210 243 154 51 chr11 104412962 104413040 -17430816 - PB1 SINE Alu -11 116 31 1 1381 333 344 56 0 chr11 104413610 104413803 -17430053 - MLT1H LTR MaLR -322 227 20 1 1381 1033 268 24 59 chr11 104414048 104414110 -17429746 - MTEa LTR MaLR 0 379 322 1 1381 654 176 136 0 chr11 104414110 104414235 -17429621 + B1_Mur1 SINE Alu 2 143 -6 1 1381 1033 268 24 59 chr11 104414235 104414545 -17429311 - MTEa LTR MaLR -58 321 20 1 1381 181 366 43 11 chr11 104414595 104414689 -17429167 - L3 LINE CR1 -578 3911 3815 1 1381 863 271 4 22 chr11 104414844 104415073 -17428783 + B4 SINE B4 4 228 -64 1 1381 582 147 0 0 chr11 104415073 104415168 -17428688 + B1_Mur3 SINE Alu 1 95 -54 1 1381 240 35 0 0 chr11 104415283 104415312 -17428544 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1381 1807 228 45 0 chr11 104415521 104415921 -17427935 + MTD LTR MaLR 1 418 -1 1 1381 28 29 0 0 chr11 104416034 104416069 -17427787 + AT_rich Low_complexity Low_complexity 1 35 0 1 1381 394 247 89 68 chr11 104416069 104416118 -17427738 - B3 SINE B2 -2 214 160 1 1381 354 23 0 0 chr11 104416118 104416161 -17427695 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1381 3726 11 126 0 chr11 104416161 104416596 -17427260 - MT2_Mm LTR ERVL -3 490 1 1 1381 394 247 89 68 chr11 104416596 104416736 -17427120 - B3 SINE B2 -57 159 21 1 1381 330 293 20 0 chr11 104416760 104416859 -17426997 - B4 SINE B4 -191 101 1 1 1381 945 246 9 9 chr11 104416870 104417087 -17426769 - ID_B1 SINE B4 -6 218 2 1 1381 794 201 148 0 chr11 104417183 104417372 -17426484 + ID_B1 SINE B4 8 224 0 1 1381 279 0 0 0 chr11 104417652 104417683 -17426173 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1381 194 345 58 0 chr11 104417840 104417927 -17425929 + L2 LINE L2 2348 2439 -980 1 1381 308 274 37 19 chr11 104418392 104418500 -17425356 - MER34 LTR ERV1 -186 356 247 1 1381 1505 214 22 77 chr11 104418506 104418717 -17425139 + MTD LTR MaLR 1 198 -221 1 1381 1314 95 26 21 chr11 104418717 104418910 -17424946 + B2_Mm2 SINE B2 2 195 0 1 1381 1505 214 22 77 chr11 104418910 104419099 -17424757 + MTD LTR MaLR 199 379 -40 1 1381 789 226 13 18 chr11 104419091 104419294 -17424562 - B3 SINE B2 -2 191 6 1 1381 180 0 0 0 chr11 104419371 104419391 -17424465 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 1 1381 237 232 203 0 chr11 104419444 104419513 -17424343 + ID4 SINE ID 1 83 0 1 1381 497 193 0 0 chr11 104419521 104419609 -17424247 - MER34 LTR ERV1 -427 115 28 1 1381 572 93 18 36 chr11 104419969 104420081 -17423775 + (TCCCC)n Simple_repeat Simple_repeat 3 112 0 1 1381 490 299 95 12 chr11 104420089 104420258 -17423598 + MLT1B LTR MaLR 192 374 -16 1 1381 627 108 0 0 chr11 104420588 104420681 -17423175 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1381 180 0 0 0 chr11 104420686 104420706 -17423150 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1381 1497 122 28 0 chr11 104420859 104421112 -17422744 - RMER6A LTR ERVK 0 756 497 1 1381 366 197 28 0 chr11 104421116 104421187 -17422669 + B4 SINE B4 128 200 -92 1 1381 239 230 149 66 chr11 104421265 104421386 -17422470 + B2_Mm2 SINE B2 62 192 -3 1 1381 251 263 119 8 chr11 104421774 104421801 -17422055 + B1F1 SINE Alu 1 149 0 1 1381 255 233 84 37 chr11 104421801 104421908 -17421948 + ID_B1 SINE B4 113 224 0 1 1381 473 215 133 37 chr11 104422165 104422300 -17421556 + B3 SINE B2 69 216 0 1 1381 880 248 18 0 chr11 104422915 104423141 -17420715 + L1_Rod LINE L1 5615 5844 -3 1 1381 3011 136 38 122 chr11 104423386 104424149 -17419707 - RMER6A LTR ERVK 0 756 58 1 1381 24 0 0 0 chr11 104424185 104424209 -17419647 + AT_rich Low_complexity Low_complexity 1 24 0 1 1381 1101 198 14 0 chr11 104424227 104424444 -17419412 - URR1B DNA MER1_type -5 220 1 1 1381 491 234 9 27 chr11 104424568 104424678 -17419178 - ID_B1 SINE B4 -16 208 101 1 1381 589 215 0 46 chr11 104424775 104424926 -17418930 + ID_B1 SINE B4 81 224 0 1 1381 995 285 29 14 chr11 104424928 104425206 -17418650 + B4A SINE B4 11 292 0 1 1381 297 100 0 0 chr11 104425218 104425268 -17418588 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1381 183 42 0 0 chr11 104425378 104425402 -17418454 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1381 1199 48 0 0 chr11 104425412 104425558 -17418298 - B1_Mus2 SINE Alu 0 147 2 1 1381 440 264 111 117 chr11 104425724 104425920 -17417936 - Charlie5 DNA MER1_type -287 2337 2136 1 1381 329 224 133 0 chr11 104425920 104426018 -17417838 + PB1D10 SINE Alu 1 111 -6 1 1381 440 264 111 117 chr11 104426018 104426172 -17417684 - Charlie5 DNA MER1_type -489 2135 1989 1 1381 311 211 9 35 chr11 104426476 104426589 -17417267 + CT-rich Low_complexity Low_complexity 4 113 0 1 1381 581 255 7 28 chr11 104427468 104427613 -17416243 - B4 SINE B4 -70 222 81 1 1381 282 211 63 38 chr11 104428056 104428135 -17415721 - RSINE1 SINE B4 0 165 85 1 1381 674 294 16 26 chr11 104428186 104428375 -17415481 + B4A SINE B4 43 229 -63 1 1381 653 122 270 0 chr11 104428376 104428491 -17415365 + B1_Mus2 SINE Alu 2 147 0 1 1381 301 333 56 49 chr11 104428555 104428697 -17415159 + B3 SINE B2 28 170 -46 1 1381 432 91 0 0 chr11 104428711 104428777 -17415079 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1381 267 252 79 56 chr11 104428813 104428873 -17414983 - MIR SINE MIR -104 158 102 1 1381 636 197 34 27 chr11 104428873 104429004 -17414852 + B1_Mur3 SINE Alu 2 136 -13 1 1381 198 103 0 0 chr11 104429004 104429033 -17414823 + (CAG)n Simple_repeat Simple_repeat 1 29 0 1 1381 636 197 34 27 chr11 104429033 104429047 -17414809 + B1_Mur3 SINE Alu 137 147 -2 1 1381 267 252 79 56 chr11 104429047 104429112 -17414744 - MIR SINE MIR -161 101 30 1 1381 230 232 70 28 chr11 104429675 104429746 -17414110 - L1MEc LINE L1 -6144 256 183 1 1381 387 0 0 0 chr11 104430102 104430145 -17413711 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1381 21 57 0 0 chr11 104430390 104430425 -17413431 + AT_rich Low_complexity Low_complexity 1 35 0 1 1381 726 237 27 38 chr11 104430432 104430616 -17413240 - B3A SINE B2 -16 182 1 1 1381 348 256 13 0 chr11 104430638 104430716 -17413140 - ID4 SINE ID -3 80 2 1 1381 947 213 63 74 chr11 104430900 104430930 -17412926 + B4A SINE B4 12 36 -256 1 1381 1769 127 218 3 chr11 104430930 104431246 -17412610 + ORR1C2 LTR MaLR 1 384 0 1 1381 947 213 63 74 chr11 104431246 104431487 -17412369 + B4A SINE B4 37 280 -12 1 1381 252 0 0 0 chr11 104431487 104431515 -17412341 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 1 1381 947 213 63 74 chr11 104431515 104431526 -17412330 + B4A SINE B4 281 291 -1 1 1381 706 206 0 22 chr11 104431559 104431682 -17412174 + B1F SINE Alu 14 136 -13 1 1381 230 0 0 32 chr11 104431682 104431713 -17412143 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1381 706 206 0 22 chr11 104431713 104431728 -17412128 + B1F SINE Alu 137 149 0 1 1381 686 237 7 6 chr11 104432971 104433112 -17410744 + B3A SINE B2 14 149 -44 1 1381 375 60 0 0 chr11 104433112 104433162 -17410694 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1381 279 267 107 96 chr11 104433162 104433198 -17410658 + B2_Mm1t SINE B2 150 192 -1 1 1381 697 259 7 7 chr11 104433250 104433394 -17410462 + RSINE1 SINE B4 3 146 -19 1 1381 382 294 0 0 chr11 104433976 104434078 -17409778 - RSINE1 SINE B4 -36 129 28 1 1381 823 227 15 20 chr11 104434603 104434805 -17409051 - ID_B1 SINE B4 -22 202 2 1 1381 1062 138 0 0 chr11 104437119 104437293 -17406563 + (TCTCC)n Simple_repeat Simple_repeat 5 178 0 1 1381 310 304 11 32 chr11 104437527 104437622 -17406234 - PB1D10 SINE Alu 0 117 25 1 1381 187 261 266 32 chr11 104437745 104437811 -17406045 + MIR SINE MIR 44 109 -153 1 1381 369 0 0 0 chr11 104437811 104437852 -17406004 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1381 187 261 266 32 chr11 104437852 104437943 -17405913 + MIR SINE MIR 110 238 -24 1 1381 201 167 0 23 chr11 104438493 104438536 -17405320 + (GGGTG)n Simple_repeat Simple_repeat 5 46 0 1 1381 309 157 0 0 chr11 104439074 104439125 -17404731 - B3 SINE B2 -160 56 6 1 1381 209 108 0 26 chr11 104440183 104440221 -17403635 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 1 1381 192 77 0 0 chr11 104440860 104440886 -17402970 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 1 1381 632 232 169 23 chr11 104441350 104441522 -17402334 - B3 SINE B2 -6 210 14 1 1381 389 276 82 22 chr11 104441836 104442044 -17401812 - MIR SINE MIR -34 228 21 1 1381 264 312 38 108 chr11 104442227 104442308 -17401548 + MamRep488 DNA hAT 3 82 -137 1 1381 1448 88 5 0 chr11 104442308 104442500 -17401356 - B2_Mm1a SINE B2 0 193 1 1 1381 264 312 38 108 chr11 104442500 104442576 -17401280 + MamRep488 DNA hAT 83 149 -70 1 1381 593 218 49 12 chr11 104442578 104442756 -17401100 + B3A SINE B2 2 192 -3 1 1381 813 230 95 29 chr11 104443360 104443570 -17400286 - ID_B1 SINE B4 0 224 1 1 1381 219 216 0 0 chr11 104443674 104443711 -17400145 + polypyrimidine Low_complexity Low_complexity 1 37 0 1 1381 607 256 18 42 chr11 104443728 104443895 -17399961 - B3A SINE B2 -34 164 2 1 1381 185 318 0 0 chr11 104443900 104443944 -17399912 + MIRc SINE MIR 109 152 -116 1 1381 688 231 0 34 chr11 104444309 104444457 -17399399 + ID_B1 SINE B4 82 224 0 1 1381 597 264 26 6 chr11 104446532 104446688 -17397168 - RSINE1 SINE B4 -4 161 3 1 1381 348 321 19 1 chr11 104446694 104446819 -17397037 + MIRb SINE MIR 68 194 -74 1 1381 1133 182 12 65 chr11 104447271 104447518 -17396338 - MTD LTR MaLR -2 417 184 1 1381 561 229 68 96 chr11 104447577 104447783 -17396073 - MTD LTR MaLR -213 206 11 1 1381 1420 81 16 0 chr11 104447783 104447968 -17395888 + B2_Mm2 SINE B2 2 189 -6 1 1381 688 195 0 0 chr11 104447983 104448101 -17395755 + B3 SINE B2 1 118 -98 1 1381 378 0 0 0 chr11 104448593 104448635 -17395221 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1381 575 238 103 0 chr11 104448904 104449030 -17394826 + ID_B1 SINE B4 84 222 -2 1 1381 825 236 12 6 chr11 104449159 104449321 -17394535 + B3A SINE B2 2 164 -34 1 1381 324 120 0 0 chr11 104449323 104449373 -17394483 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1381 315 226 0 0 chr11 104449412 104449474 -17394382 + ID4 SINE ID 6 67 -16 1 1381 257 267 241 6 chr11 104449492 104449658 -17394198 - L1MB3 LINE L1 -190 5993 5789 1 1381 25 0 0 0 chr11 104449684 104449709 -17394147 + AT_rich Low_complexity Low_complexity 1 25 0 1 1381 374 204 46 11 chr11 104449768 104449858 -17393998 + B1_Mur2 SINE Alu 30 149 0 1 1381 243 0 0 0 chr11 104450624 104450651 -17393205 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1381 192 217 0 21 chr11 104450658 104450705 -17393151 - L2b LINE L2 -13 3362 3317 1 1381 203 256 186 0 chr11 104450671 104450757 -17393099 - MIRb SINE MIR -21 247 146 1 1381 210 143 0 0 chr11 104450844 104450879 -17392977 + (CAT)n Simple_repeat Simple_repeat 1 35 0 1 1381 660 237 58 39 chr11 104450918 104451124 -17392732 + MTD LTR MaLR 18 227 -192 1 1381 426 280 0 0 chr11 104452008 104452101 -17391755 - B3A SINE B2 -103 95 3 1 1381 582 311 47 56 chr11 104452053 104452107 -17391749 - B4A SINE B4 -18 274 215 1 1381 234 0 0 0 chr11 104452107 104452133 -17391723 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1381 582 311 25 55 chr11 104452133 104452242 -17391614 - B4A SINE B4 -77 215 106 1 1381 2364 141 55 12 chr11 104452242 104452644 -17391212 + MTC LTR MaLR 3 421 0 1 1381 582 311 25 55 chr11 104452644 104452713 -17391143 - B4A SINE B4 -187 105 40 1 1381 207 0 0 0 chr11 104452797 104452820 -17391036 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1381 1230 68 0 0 chr11 104452820 104452967 -17390889 - B1_Mm SINE Alu 0 147 1 1 1381 849 262 13 108 chr11 104453094 104453410 -17390446 - B4A SINE B4 -2 290 5 1 1381 384 40 0 0 chr11 104454466 104454516 -17389340 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1 1381 1000 120 14 0 chr11 104454523 104454665 -17389191 - B1_Mur4 SINE Alu -5 145 2 1 1381 451 241 87 40 chr11 104454666 104454839 -17389017 - B2_Mm2 SINE B2 -14 181 1 1 1381 1113 169 108 0 chr11 104455161 104455356 -17388500 + B3 SINE B2 1 216 0 1 1381 436 231 0 0 chr11 104455809 104455887 -17387969 + B3A SINE B2 2 79 -119 1 1381 204 125 41 20 chr11 104455900 104455949 -17387907 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1381 983 267 35 93 chr11 104455951 104456020 -17387836 - RCHARR1 DNA MER1_type -52 922 853 1 1381 1446 72 17 0 chr11 104456020 104456200 -17387656 - B2_Mm2 SINE B2 -11 184 2 1 1381 983 267 35 93 chr11 104456200 104456560 -17387296 - RCHARR1 DNA MER1_type -122 852 518 1 1381 460 295 80 42 chr11 104456564 104456826 -17387030 - Lx8 LINE L1 0 7473 7202 1 1381 453 250 175 111 chr11 104456844 104457015 -17386841 - ID_B1 SINE B4 -41 183 2 1 1381 1103 176 84 0 chr11 104457015 104457240 -17386616 - RCHARR1 DNA MER1_type -437 537 293 1 1381 616 214 68 0 chr11 104457240 104457357 -17386499 + RSINE1 SINE B4 3 127 -38 1 1381 422 284 84 30 chr11 104458216 104458424 -17385432 + MIRb SINE MIR 2 231 -37 1 1381 1196 62 0 0 chr11 104459632 104459777 -17384079 - B1_Mm SINE Alu -1 146 2 1 1381 199 326 138 53 chr11 104460050 104460144 -17383712 - MIRc SINE MIR -129 139 38 1 1381 347 0 23 0 chr11 104460184 104460227 -17383629 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 1 1381 219 292 167 0 chr11 104460273 104460345 -17383511 - RSINE1 SINE B4 -74 91 8 1 1381 378 0 0 0 chr11 104461241 104461283 -17382573 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1381 809 268 56 32 chr11 104461368 104461562 -17382294 + MTE2b LTR MaLR 1 206 -173 1 1381 444 37 0 0 chr11 104461562 104461616 -17382240 + (TCC)n Simple_repeat Simple_repeat 3 56 0 1 1381 1263 48 0 0 chr11 104461617 104461764 -17382092 - B1_Mm SINE Alu 0 147 1 1 1381 809 268 56 32 chr11 104461764 104461783 -17382073 + MTE2b LTR MaLR 207 221 -158 1 1381 23 54 0 0 chr11 104461824 104461861 -17381995 + AT_rich Low_complexity Low_complexity 1 37 0 1 1381 324 0 0 0 chr11 104461885 104461921 -17381935 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1381 459 266 35 35 chr11 104461921 104462034 -17381822 - RSINE1 SINE B4 -51 114 2 1 1381 373 301 26 9 chr11 104462969 104463083 -17380773 + PB1D10 SINE Alu 1 116 -1 1 1381 186 43 0 0 chr11 104463312 104463335 -17380521 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1381 470 328 102 112 chr11 104463387 104463682 -17380174 - B4A SINE B4 0 292 1 1 1381 345 303 44 44 chr11 104463686 104463834 -17380022 + L1MEf LINE L1 757 898 -5196 1 1381 1222 54 0 0 chr11 104463834 104463981 -17379875 + B1_Mus2 SINE Alu 1 147 0 1 1381 338 259 71 91 chr11 104463981 104464138 -17379718 + L1MEf LINE L1 859 1019 -5075 1 172 444 276 130 61 chr11 104464224 104464471 -17379385 + L1MEf LINE L1 1037 1300 -4900 1 1382 305 236 144 12 chr11 104464476 104464643 -17379213 + L1MC4 LINE L1 6952 7140 -742 1 1382 453 222 40 10 chr11 104464889 104464989 -17378867 - RSINE1 SINE B4 -17 148 46 1 1382 1279 40 0 0 chr11 104465023 104465171 -17378685 + B1_Mus1 SINE Alu 1 148 0 1 1382 477 141 0 0 chr11 104465171 104465256 -17378600 + (A)n Simple_repeat Simple_repeat 1 85 0 1 1382 431 221 157 111 chr11 104465261 104465541 -17378315 + L1MC4 LINE L1 7300 7592 -450 1 1382 250 240 48 39 chr11 104466146 104466250 -17377606 + L1MC4 LINE L1 7714 7818 -64 1 1382 406 258 126 75 chr11 104466395 104466609 -17377247 + ORR1D1 LTR MaLR 8 232 -142 1 1382 263 324 0 14 chr11 104466635 104466704 -17377152 + RSINE1 SINE B4 11 78 -87 1 1382 243 250 85 57 chr11 104466679 104466767 -17377089 + B3 SINE B2 95 182 -34 1 1382 819 52 27 49 chr11 104466767 104466950 -17376906 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1382 243 250 85 57 chr11 104466950 104466967 -17376889 + B3 SINE B2 183 203 -13 1 1382 309 94 46 23 chr11 104466968 104467055 -17376801 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 1382 750 189 256 0 chr11 104467229 104467393 -17376463 - B3 SINE B2 -6 210 5 1 1382 329 307 82 20 chr11 104467403 104467599 -17376257 + L1MEf LINE L1 1559 1766 -4434 1 1382 635 241 114 52 chr11 104467709 104467919 -17375937 - B4A SINE B4 -69 223 1 1 1382 730 231 113 0 chr11 104468344 104468530 -17375326 - ID_B1 SINE B4 -16 208 2 1 1382 531 0 0 0 chr11 104468534 104468593 -17375263 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1 1382 195 129 0 0 chr11 104470029 104470060 -17373796 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1382 858 251 29 10 chr11 104470061 104470266 -17373590 - ID_B1 SINE B4 -15 209 1 1 1382 243 0 0 0 chr11 104471034 104471061 -17372795 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1382 378 288 114 17 chr11 104471594 104471799 -17372057 + MIR SINE MIR 3 215 -53 1 1382 468 231 6 0 chr11 104472311 104472654 -17371202 + (TG)n Simple_repeat Simple_repeat 1 345 0 1 1382 264 324 29 0 chr11 104472656 104472724 -17371132 - ID4 SINE ID -11 72 3 1 1382 243 0 0 0 chr11 104473134 104473161 -17370695 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1382 779 235 81 10 chr11 104473479 104473677 -17370179 + B3 SINE B2 1 212 -4 1 1382 529 298 134 0 chr11 104473702 104473873 -17369983 + B3A SINE B2 2 195 -3 1 1382 569 330 65 0 chr11 104473896 104474175 -17369681 - L1ME1 LINE L1 -59 6120 5824 1 1382 760 169 8 1 chr11 104474332 104474460 -17369396 + B1_Mur3 SINE Alu 21 149 0 1 1382 1026 25 0 0 chr11 104474516 104474637 -17369219 + (TTTC)n Simple_repeat Simple_repeat 4 124 0 1 1382 1000 296 64 16 chr11 104474690 104475129 -17368727 - Lx8 LINE L1 -17 7456 6997 1 1382 305 113 0 46 chr11 104475240 104475305 -17368551 + A-rich Low_complexity Low_complexity 2 63 0 1 1382 405 235 73 0 chr11 104476262 104476398 -17367458 - L1MA8 LINE L1 -8 6283 6138 1 1382 563 145 0 0 chr11 104476429 104476512 -17367344 - B1_Mur4 SINE Alu 0 150 68 1 1382 337 188 36 36 chr11 104476525 104476608 -17367248 + L1MA8 LINE L1 6042 6124 -167 1 1382 260 245 0 0 chr11 104476620 104476669 -17367187 + PB1D7 SINE Alu 1 49 -71 1 1382 536 251 48 24 chr11 104476678 104476839 -17367017 - ID_B1 SINE B4 -62 230 70 1 1382 576 0 0 0 chr11 104477182 104477246 -17366610 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 1 1382 216 303 39 29 chr11 104477341 104477443 -17366413 - MIR SINE MIR -70 138 36 1 1382 227 352 146 55 chr11 104478127 104478292 -17365564 + L2c LINE L2 2579 2758 -661 1 1382 621 0 0 0 chr11 104478640 104478709 -17365147 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1382 298 350 17 25 chr11 104478714 104478834 -17365022 + L2c LINE L2 3256 3374 -13 1 1382 279 79 0 0 chr11 104478834 104478872 -17364984 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1 1382 696 287 104 18 chr11 104479073 104479408 -17364448 - MLT1C LTR MaLR -3 387 44 1 1382 306 0 0 0 chr11 104479417 104479451 -17364405 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1382 463 133 22 11 chr11 104479665 104479756 -17364100 + CT-rich Low_complexity Low_complexity 2 93 0 1 1382 588 268 42 7 chr11 104481297 104481440 -17362416 + RSINE1 SINE B4 3 150 -15 1 1382 237 167 0 0 chr11 104481916 104481927 -17361929 + (CA)n Simple_repeat Simple_repeat 2 12 0 1 1382 204 40 0 0 chr11 104481927 104481952 -17361904 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1382 237 167 0 0 chr11 104481952 104482006 -17361850 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1382 246 224 0 15 chr11 104482055 104482123 -17361733 + CT-rich Low_complexity Low_complexity 1 67 0 1 1382 211 114 22 22 chr11 104482129 104482156 -17361700 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1382 234 0 0 0 chr11 104482156 104482182 -17361674 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1382 211 114 22 22 chr11 104482182 104482199 -17361657 + (CA)n Simple_repeat Simple_repeat 2 18 0 1 1382 318 305 0 0 chr11 104482778 104482860 -17360996 - ID4 SINE ID 0 83 2 1 1382 552 257 151 28 chr11 104482860 104483112 -17360744 - LTR37A LTR ERV1 -2 466 184 1 1382 864 102 103 225 chr11 104483954 104484207 -17359649 - URR1A DNA MER1_type 0 226 5 1 1382 247 296 55 105 chr11 104484702 104484831 -17359025 - RLTR40 LTR ERVK -155 662 543 1 1382 1299 239 122 22 chr11 104484831 104485242 -17358614 - RMER5 LTR ERV1 0 534 83 1 1382 657 194 0 0 chr11 104485694 104485874 -17357982 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1382 234 213 115 0 chr11 104487913 104487974 -17355882 - MER53 DNA hAT 0 193 126 1 1382 342 0 0 0 chr11 104488214 104488252 -17355604 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1382 657 224 54 7 chr11 104488383 104488458 -17355398 + ID SINE ID 1 82 -142 1 1382 333 272 21 32 chr11 104488458 104488545 -17355311 + PB1 SINE Alu 1 86 -41 1 1382 938 278 18 0 chr11 104488545 104488768 -17355088 + B4A SINE B4 2 228 -64 1 1382 685 215 15 7 chr11 104488770 104488906 -17354950 + B1_Mur2 SINE Alu 13 149 0 1 1382 1307 97 27 5 chr11 104489777 104489964 -17353892 + B2_Mm2 SINE B2 3 193 -2 1 1382 249 306 0 0 chr11 104490207 104490269 -17353587 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1382 326 270 0 0 chr11 104490566 104490640 -17353216 - HAL1-3A_ME LINE L1 -809 2049 1976 1 1382 237 164 22 59 chr11 104490661 104490797 -17353059 + (TG)n Simple_repeat Simple_repeat 1 131 0 1 1382 620 149 8 42 chr11 104490812 104491072 -17352784 + (TG)n Simple_repeat Simple_repeat 1 250 0 1 1382 228 315 108 16 chr11 104491313 104491442 -17352414 + MIR SINE MIR 122 262 0 1 1382 335 347 83 7 chr11 104491613 104491758 -17352098 - MIR3 SINE MIR -17 191 36 1 1382 254 167 37 0 chr11 104492089 104492143 -17351713 - L1MB2 LINE L1 0 6171 6116 1 1382 1279 191 48 38 chr11 104492146 104492353 -17351503 - B4A SINE B4 0 292 85 1 1382 759 40 0 0 chr11 104492353 104492452 -17351404 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 1382 1279 191 48 38 chr11 104492452 104492533 -17351323 - B4A SINE B4 -208 84 1 1 1382 471 310 29 19 chr11 104492547 104492754 -17351102 - L1MB3 LINE L1 -37 6146 5938 1 1382 350 344 27 35 chr11 104494205 104494228 -17349628 - ID_B1 SINE B4 -56 236 140 1 1382 477 328 9 0 chr11 104494228 104494344 -17349512 - B1F1 SINE Alu -31 118 2 1 1382 350 344 27 35 chr11 104494344 104494358 -17349498 - ID_B1 SINE B4 -56 139 70 1 1382 474 18 0 0 chr11 104494515 104494570 -17349286 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1382 665 175 95 63 chr11 104495074 104495263 -17348593 - B3A SINE B2 0 198 4 1 1382 979 168 78 39 chr11 104495666 104495871 -17347985 - B3 SINE B2 -3 213 1 1 1382 269 193 21 119 chr11 104495890 104496005 -17347851 - PB1D7 SINE Alu 0 149 46 1 1382 331 198 0 0 chr11 104496076 104496143 -17347713 + ORR1E LTR MaLR 1 67 -303 1 1382 304 304 0 0 chr11 104496161 104496230 -17347626 - ID2 SINE ID -13 70 2 1 1382 653 263 107 104 chr11 104496251 104496607 -17347249 - ORR1E LTR MaLR -2 357 1 1 1382 663 224 5 134 chr11 104496683 104496777 -17347079 + B3A SINE B2 4 90 -108 1 1382 234 0 0 0 chr11 104496786 104496812 -17347044 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1382 1172 55 0 20 chr11 104496812 104496951 -17346905 - B1_Mus1 SINE Alu -10 138 1 1 1382 663 224 5 134 chr11 104496951 104497042 -17346814 + B3A SINE B2 91 165 -33 1 1382 234 311 0 0 chr11 104497439 104497500 -17346356 - MTEa LTR MaLR 0 379 319 1 1382 335 250 0 0 chr11 104497682 104497742 -17346114 + ID4 SINE ID 15 74 -9 1 1382 603 178 0 0 chr11 104497788 104497962 -17345894 + (CA)n Simple_repeat Simple_repeat 1 174 0 1 1382 513 194 0 0 chr11 104497983 104498158 -17345698 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1382 194 33 0 62 chr11 104498155 104498187 -17345669 + (CAGAGA)n Simple_repeat Simple_repeat 6 35 0 1 1382 219 103 0 0 chr11 104498187 104498226 -17345630 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1382 254 29 0 28 chr11 104499093 104499129 -17344727 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1382 236 300 89 24 chr11 104500047 104500087 -17343769 - BC1_Mm scRNA scRNA -19 133 88 1 1382 503 212 0 66 chr11 104500087 104500208 -17343648 - PB1D10 SINE Alu -1 116 4 2 1382 237 300 89 24 chr11 104500208 104500290 -17343566 - ID4_ SINE ID -65 87 3 1 1382 306 0 0 0 chr11 104501349 104501383 -17342473 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1382 855 143 13 75 chr11 104502049 104502208 -17341648 + B1_Mur4 SINE Alu 1 149 -1 4 1382 395 106 15 0 chr11 104502696 104502762 -17341094 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1382 311 355 21 0 chr11 104503952 104504045 -17339811 - L2a LINE L2 -21 3405 3311 6 1382 948 226 39 10 chr11 104504108 104504314 -17339542 - B3 SINE B2 -4 212 1 7 1382 454 224 279 0 chr11 104505854 104506015 -17337841 - MER3 DNA MER1_type 0 209 4 8 1382 263 265 10 0 chr11 104506048 104506150 -17337706 + (TG)n Simple_repeat Simple_repeat 1 103 0 9 1382 1054 232 67 53 chr11 104506158 104506440 -17337416 - B4A SINE B4 -4 288 3 1 1382 245 336 30 101 chr11 104506684 104506853 -17337003 - MamSINE1 SINE tRNA -121 169 13 1 1382 345 224 128 12 chr11 104506875 104506961 -17336895 + ID_B1 SINE B4 89 184 -40 1 1382 279 270 249 25 chr11 104507041 104507202 -17336654 + B3A SINE B2 1 197 -1 1 1382 33 66 0 0 chr11 104507307 104507368 -17336488 + AT_rich Low_complexity Low_complexity 1 61 0 1 1382 264 226 146 56 chr11 104508888 104508977 -17334879 + LTR16A1 LTR ERVL 61 157 -299 1 1382 374 292 25 16 chr11 104508999 104509111 -17334745 + LTR16A1 LTR ERVL 209 323 -133 1 1382 510 86 0 0 chr11 104509111 104509192 -17334664 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1382 690 258 122 69 chr11 104509203 104509465 -17334391 - B4 SINE B4 -16 276 1 1 1382 792 176 58 7 chr11 104509638 104509775 -17334081 - B1_Mur4 SINE Alu -6 144 1 1 1382 810 149 284 6 chr11 104509801 104509970 -17333886 - B3 SINE B2 0 216 1 1 1382 895 244 15 10 chr11 104509971 104510174 -17333682 - B3 SINE B2 -11 205 2 2 1382 252 231 141 0 chr11 104510175 104510253 -17333603 - 4.5SRNA scRNA scRNA -4 90 2 2 1382 41994 4 0 0 chr11 104510544 104516894 -17326962 - L1Md_A LINE L1 0 6582 232 2 1382 258 339 92 23 chr11 104517170 104517300 -17326556 + L2b LINE L2 3229 3367 -8 2 1382 264 355 43 27 chr11 104517466 104517654 -17326202 - L2b LINE L2 -158 3217 3027 2 1382 471 277 83 135 chr11 104517982 104518308 -17325548 - ORR1D2 LTR MaLR -1 369 61 2 1382 2184 208 87 34 chr11 104519371 104519462 -17324394 - RLTR20B1 LTR ERVK -4 559 472 2 1382 362 21 21 0 chr11 104519462 104519509 -17324347 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1382 2184 208 87 34 chr11 104519509 104519945 -17323911 - RLTR20B1 LTR ERVK -92 471 5 2 1382 419 272 96 48 chr11 104520688 104520854 -17323002 + MER45A DNA Tip100 5 178 0 2 1382 1074 117 0 0 chr11 104520908 104521087 -17322769 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 2 1382 304 275 44 0 chr11 104521125 104521228 -17322628 + PB1D10 SINE Alu 22 136 -13 3 1382 576 216 21 21 chr11 104521823 104521965 -17321891 + B1F1 SINE Alu 3 144 -5 3 1382 1094 188 49 10 chr11 104521986 104522190 -17321666 + B3 SINE B2 1 212 -4 3 1382 205 127 0 52 chr11 104522725 104522783 -17321073 + G-rich Low_complexity Low_complexity 6 60 0 3 1382 192 346 111 0 chr11 104522793 104522874 -17320982 + MIRb SINE MIR 111 200 -68 3 1382 516 154 22 11 chr11 104523911 104524003 -17319853 + B3A SINE B2 1 93 -105 3 1382 338 280 47 0 chr11 104524804 104524911 -17318945 - MER53 DNA hAT -81 112 1 3 1382 580 235 68 81 chr11 104525738 104525960 -17317896 - MIR SINE MIR -14 248 30 3 1382 281 327 36 45 chr11 104526018 104526130 -17317726 - Charlie8 DNA MER1_type -2163 265 155 3 1382 573 193 0 0 chr11 104526136 104526276 -17317580 + (TG)n Simple_repeat Simple_repeat 2 141 0 3 1382 690 265 33 29 chr11 104526370 104526580 -17317276 - B3 SINE B2 0 216 6 4 1382 348 306 23 3 chr11 104527253 104527372 -17316484 - MIR SINE MIR -50 218 91 4 1382 378 287 72 13 chr11 104527575 104527727 -17316129 - RSINE1 SINE B4 -2 163 3 4 1382 1149 202 14 9 chr11 104530449 104530669 -17313187 - ID_B1 SINE B4 0 224 4 4 1382 240 254 110 27 chr11 104530745 104530818 -17313038 + ID4 SINE ID 1 79 -4 4 1382 414 0 0 0 chr11 104530819 104530865 -17312991 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1382 369 0 0 0 chr11 104531992 104532033 -17311823 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 1382 212 0 0 35 chr11 104532213 104532242 -17311614 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1382 565 254 188 0 chr11 104532255 104532420 -17311436 + B3A SINE B2 1 196 -2 4 1382 2739 216 38 35 chr11 104532925 104532957 -17310899 + Lx6 LINE L1 6849 6878 -582 4 1382 447 19 0 0 chr11 104532957 104533009 -17310847 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1382 2739 216 38 35 chr11 104533009 104533576 -17310280 + Lx6 LINE L1 6879 7450 -10 4 1382 349 256 26 0 chr11 104533590 104533668 -17310188 + MER5A DNA MER1_type 103 182 -7 5 1382 1673 21 11 0 chr11 104533760 104533950 -17309906 - B2_Mm1a SINE B2 -1 192 1 5 1382 640 240 50 31 chr11 104534076 104534235 -17309621 - RSINE1 SINE B4 0 165 4 5 1382 766 254 18 6 chr11 104534446 104534612 -17309244 + B3A SINE B2 1 168 -30 5 1382 481 278 9 0 chr11 104534704 104534819 -17309037 + PB1D9 SINE Alu 5 120 0 5 1382 983 218 49 5 chr11 104534844 104535047 -17308809 + B3 SINE B2 1 212 -4 5 1382 244 264 79 35 chr11 104535438 104535552 -17308304 - ORR1E LTR MaLR -177 182 64 5 1382 657 325 126 60 chr11 104535710 104535890 -17307966 - MTE-int LTR MaLR -65 1515 1326 5 1382 481 234 35 87 chr11 104535890 104536063 -17307793 + RSINE1 SINE B4 2 165 0 5 1382 657 325 126 60 chr11 104536063 104536271 -17307585 - MTE-int LTR MaLR -255 1325 1092 5 1382 2176 128 116 6 chr11 104536271 104536633 -17307223 - RLTR44A LTR ERVK 0 405 4 6 1382 657 325 126 60 chr11 104536633 104536678 -17307178 - MTE-int LTR MaLR -489 1091 1052 5 1382 1288 36 0 12 chr11 104536680 104536848 -17307008 + (TTC)n Simple_repeat Simple_repeat 1 166 0 6 1382 452 176 10 0 chr11 104536850 104536952 -17306904 + CT-rich Low_complexity Low_complexity 2 104 0 6 1382 5169 63 12 0 chr11 104537237 104537886 -17305970 + L1_Mus3 LINE L1 5976 6632 -6 6 1382 312 384 68 54 chr11 104537890 104538168 -17305688 - MTE-int LTR MaLR -1109 471 190 5 1382 505 327 91 66 chr11 104538274 104538624 -17305232 - MT2A LTR ERVL -174 359 1 6 1382 492 99 0 0 chr11 104538662 104538733 -17305123 + (GGA)n Simple_repeat Simple_repeat 1 71 0 6 1382 486 46 0 0 chr11 104538794 104538859 -17304997 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 6 1382 622 146 55 0 chr11 104538859 104538969 -17304887 - ID_B1 SINE B4 -1 223 108 6 1382 242 324 82 68 chr11 104538889 104539035 -17304821 + MLT2B5 LTR ERVL 286 433 -168 6 1382 286 283 179 34 chr11 104539282 104539461 -17304395 + MLT1D LTR MaLR 107 311 -201 6 1382 704 296 88 32 chr11 104539479 104539730 -17304126 - MLT1F1 LTR MaLR -6 563 299 7 1382 619 211 101 43 chr11 104539921 104540109 -17303747 + MLT1D LTR MaLR 6 204 -301 7 1382 1147 52 0 0 chr11 104540229 104540364 -17303492 - B1_Mus1 SINE Alu -13 135 1 7 1382 207 0 0 0 chr11 104541085 104541108 -17302748 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1382 326 207 138 0 chr11 104541992 104542079 -17301777 + MLT1D LTR MaLR 395 493 -12 6 1382 388 277 204 19 chr11 104542109 104542271 -17301585 - MLT1F-int LTR MaLR 0 1489 1298 7 1382 665 239 117 0 chr11 104542292 104542455 -17301401 - B4 SINE B4 -110 182 1 7 1382 444 174 217 9 chr11 104542464 104542584 -17301272 - B1F SINE Alu -8 141 1 7 1382 251 54 27 0 chr11 104542590 104542627 -17301229 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1382 1497 69 0 5 chr11 104542658 104542848 -17301008 - B2_Mm2 SINE B2 -6 189 1 7 1382 386 277 113 62 chr11 104542852 104543029 -17300827 - MLT1F-int LTR MaLR -623 866 681 7 1382 1105 220 64 132 chr11 104543029 104543123 -17300733 + L1M2 LINE L1 4871 4962 -1181 7 1382 2435 85 19 0 chr11 104543123 104543442 -17300414 + ORR1A2 LTR MaLR 3 327 0 8 1382 1105 220 64 132 chr11 104543442 104543845 -17300011 + L1M2 LINE L1 4963 5334 -809 7 1382 533 285 78 13 chr11 104544028 104544284 -17299572 + L1MA7 LINE L1 5265 5526 -765 8 1382 1016 241 120 87 chr11 104544284 104544675 -17299181 + MTD LTR MaLR 2 405 -14 8 1382 204 172 49 29 chr11 104544720 104544822 -17299034 + T-rich Low_complexity Low_complexity 5 108 0 8 1382 887 100 0 8 chr11 104544822 104544953 -17298903 - B1_Mus1 SINE Alu 0 148 19 8 1382 1059 239 153 101 chr11 104544968 104545639 -17298217 + L1MA7 LINE L1 5584 6289 -2 8 1382 1402 210 74 3 chr11 104545736 104546032 -17297824 - Lx2B LINE L1 -2 6998 6682 8 1382 254 271 159 0 chr11 104546076 104546183 -17297673 - MIRb SINE MIR -128 140 17 8 1382 560 284 39 0 chr11 104546263 104546390 -17297466 + RSINE1 SINE B4 4 135 -30 8 1382 414 261 225 24 chr11 104548049 104548218 -17295638 - B3 SINE B2 -12 204 2 8 1382 305 342 16 16 chr11 104548323 104548445 -17295411 + MIRb SINE MIR 139 260 -8 8 1382 213 94 0 0 chr11 104548479 104548511 -17295345 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1382 360 0 0 0 chr11 104548948 104548988 -17294868 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 9 1382 22 0 0 0 chr11 104549210 104549232 -17294624 + AT_rich Low_complexity Low_complexity 1 22 0 9 1382 486 279 43 7 chr11 104549330 104549471 -17294385 - Lx8 LINE L1 -281 7192 7047 9 1382 869 230 169 64 chr11 104549531 104549875 -17293981 - ORR1C2 LTR MaLR 0 384 5 9 1382 1626 285 118 15 chr11 104549878 104550420 -17293436 - Lx8 LINE L1 -545 6928 6331 9 1382 278 288 35 26 chr11 104550415 104550529 -17293327 - L1MA7 LINE L1 -186 6105 5991 9 1382 457 252 105 52 chr11 104550556 104550728 -17293128 - Lx8 LINE L1 -9 7464 7284 9 1382 322 153 65 48 chr11 104550906 104550968 -17292888 + MTE2b LTR MaLR 1 63 -316 9 1382 347 267 8 32 chr11 104550990 104551114 -17292742 - Lx8 LINE L1 0 7473 7353 9 1382 459 259 66 95 chr11 104551108 104551310 -17292546 - L1M3 LINE L1 -1460 4683 4475 9 1382 790 261 59 5 chr11 104551310 104551514 -17292342 - B3 SINE B2 0 216 2 1 1382 349 259 66 95 chr11 104551514 104551554 -17292302 - L1M3 LINE L1 -1669 4474 4448 9 1382 327 252 81 37 chr11 104551544 104551705 -17292151 - L1MD LINE L1 -2516 5479 5312 1 1382 614 230 37 18 chr11 104551768 104551932 -17291924 - L1MC LINE L1 -891 5255 5089 1 1382 603 40 0 0 chr11 104552850 104552924 -17290932 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 1 1382 1450 58 15 40 chr11 104552924 104553112 -17290744 - B2_Mm2 SINE B2 -11 184 1 1 1382 258 355 66 29 chr11 104553636 104553877 -17289979 + MER112 DNA MER1_type 11 260 -1 1 1382 407 303 93 60 chr11 104554145 104554542 -17289314 + L1MC5 LINE L1 7474 7883 -78 1 1382 34 24 0 0 chr11 104554822 104554863 -17288993 + AT_rich Low_complexity Low_complexity 1 41 0 1 1382 9146 86 26 32 chr11 104554863 104556178 -17287678 - Lx3A LINE L1 -5 6976 5670 1 1382 27 49 0 0 chr11 104556186 104556227 -17287629 + AT_rich Low_complexity Low_complexity 1 41 0 1 1382 984 151 0 14 chr11 104556273 104556421 -17287435 - B1_Mus1 SINE Alu -2 146 1 1 1382 1048 219 76 60 chr11 104556466 104556767 -17287089 + MTE2a LTR MaLR 62 367 -12 1 1382 602 285 8 0 chr11 104556809 104556932 -17286924 - PB1 SINE Alu -3 124 1 1 1382 278 301 95 81 chr11 104557084 104557305 -17286551 - MLT1C LTR MaLR -192 275 52 1 1382 375 23 0 0 chr11 104557619 104557663 -17286193 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1382 1588 42 0 20 chr11 104557740 104557936 -17285920 - B2_Mm1a SINE B2 0 193 2 1 1382 1309 79 17 0 chr11 104557936 104558113 -17285743 - B2_Mm2 SINE B2 -14 181 2 1 1382 1162 75 0 0 chr11 104558470 104558617 -17285239 - B1_Mm SINE Alu 0 147 1 1 1382 302 260 90 45 chr11 104558629 104558762 -17285094 - L1MEd LINE L1 -5138 981 843 1 1382 1193 78 0 6 chr11 104558905 104559085 -17284771 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1382 369 0 0 0 chr11 104559085 104559125 -17284731 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1382 447 296 16 23 chr11 104559125 104559253 -17284603 - B1F2 SINE Alu -22 127 1 1 1382 481 235 22 0 chr11 104560548 104560649 -17283207 - PB1D9 SINE Alu -13 107 6 1 1382 381 243 307 7 chr11 104560677 104560814 -17283042 - B3 SINE B2 -38 178 1 1 1382 771 32 0 0 chr11 104561190 104561284 -17282572 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 1 1382 415 93 346 67 chr11 104561285 104561389 -17282467 - B2_Mm2 SINE B2 -14 181 49 1 1382 1097 133 46 0 chr11 104561438 104561611 -17282245 - B2_Mm2 SINE B2 -14 181 1 1 1382 626 202 32 16 chr11 104561654 104561780 -17282076 + B1F1 SINE Alu 15 142 -7 1 1382 791 21 10 0 chr11 104562036 104562133 -17281723 + (CCCCCT)n Simple_repeat Simple_repeat 1 98 0 1 1382 1062 264 11 36 chr11 104562363 104562642 -17281214 + B4 SINE B4 21 292 0 1 1382 699 278 76 59 chr11 104562703 104563023 -17280833 - L1MB1 LINE L1 -40 6149 5824 1 1382 180 0 0 0 chr11 104563023 104563043 -17280813 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 1382 699 278 76 59 chr11 104563043 104563211 -17280645 - L1MB1 LINE L1 -366 5823 5653 1 1382 238 235 0 0 chr11 104563230 104563281 -17280575 - ID_B1 SINE B4 -19 205 155 1 1382 236 263 35 0 chr11 104563278 104563335 -17280521 - ID_B1 SINE B4 -11 213 155 1 1382 4504 58 17 2 chr11 104563394 104563976 -17279880 - L1_Mus3 LINE L1 0 6638 6048 1 1382 409 302 39 16 chr11 104564020 104564148 -17279708 - ID_B1 SINE B4 -11 213 83 1 1382 199 207 35 21 chr11 104564397 104564540 -17279316 + (TA)n Simple_repeat Simple_repeat 1 145 0 1 1382 543 179 104 0 chr11 104564541 104564647 -17279209 - B1_Mur2 SINE Alu -10 139 23 1 1382 290 138 0 17 chr11 104564701 104564760 -17279096 + CT-rich Low_complexity Low_complexity 3 60 0 1 1382 662 197 125 33 chr11 104564767 104564951 -17278905 - B3 SINE B2 -14 202 2 1 1382 504 0 0 0 chr11 104565121 104565177 -17278679 + (TCCC)n Simple_repeat Simple_repeat 1 56 0 1 1382 333 246 58 0 chr11 104565177 104565246 -17278610 - B1F SINE Alu -37 112 40 1 1382 23 0 0 0 chr11 104565311 104565334 -17278522 + AT_rich Low_complexity Low_complexity 1 23 0 1 1382 1043 46 0 0 chr11 104566161 104566291 -17277565 - B1_Mus1 SINE Alu 0 148 19 1 1382 638 196 17 92 chr11 104566291 104566330 -17277526 - ID_B1 SINE B4 0 219 64 1 1382 23 33 0 0 chr11 104566342 104566372 -17277484 + AT_rich Low_complexity Low_complexity 1 30 0 1 1382 286 256 119 8 chr11 104566516 104566634 -17277222 + RLTR30 LTR ERV1 1 131 -248 1 1382 256 235 29 0 chr11 104566575 104566643 -17277213 - RLTR30 LTR ERV1 -298 81 12 1 1382 406 323 46 57 chr11 104566734 104566888 -17276968 + Charlie24 DNA MER1_type 75 224 -2226 1 1382 1558 57 0 10 chr11 104566888 104567082 -17276774 - B2_Mm1a SINE B2 0 193 2 1 1382 406 323 46 57 chr11 104567082 104567209 -17276647 + Charlie24 DNA MER1_type 225 353 -2097 1 1382 441 0 0 0 chr11 104567214 104567263 -17276593 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1382 609 269 44 150 chr11 104567369 104567668 -17276188 + ID_B1 SINE B4 2 270 -22 1 1382 259 290 97 0 chr11 104567623 104567716 -17276140 + Charlie24 DNA MER1_type 343 444 -2006 1 1382 725 299 6 12 chr11 104567730 104567896 -17275960 + B3A SINE B2 1 165 -33 1 1382 229 64 0 60 chr11 104568485 104568535 -17275321 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1382 578 222 215 0 chr11 104568557 104568692 -17275164 - B3A SINE B2 -34 164 1 1 1382 309 270 12 75 chr11 104568730 104568803 -17275053 + RSINE1 SINE B4 3 72 -93 1 1382 270 0 0 0 chr11 104568803 104568833 -17275023 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1382 389 292 160 23 chr11 104568949 104569205 -17274651 - B4A SINE B4 0 292 2 1 1382 374 289 14 20 chr11 104569229 104569316 -17274540 - RSINE1 SINE B4 -209 83 2 1 1382 512 227 13 0 chr11 104569398 104569552 -17274304 + (CACG)n Simple_repeat Simple_repeat 4 159 0 1 1382 582 247 19 88 chr11 104569557 104569717 -17274139 - RSINE1 SINE B4 -16 149 1 1 1382 3040 100 70 2 chr11 104570485 104570974 -17272882 - Lx2 LINE L1 0 6997 6476 1 1382 27 49 0 0 chr11 104571038 104571079 -17272777 + AT_rich Low_complexity Low_complexity 1 41 0 1 1382 636 304 0 0 chr11 104571173 104571308 -17272548 - ID_B1 SINE B4 -8 216 82 1 1382 456 19 0 0 chr11 104571705 104571758 -17272098 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1382 460 252 109 39 chr11 104572255 104572383 -17271473 + B1_Mur1 SINE Alu 2 138 -11 1 1382 261 0 0 0 chr11 104572383 104572412 -17271444 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1382 280 228 0 0 chr11 104572422 104572479 -17271377 + B4 SINE B4 2 58 -234 1 1382 273 163 0 0 chr11 104572493 104572542 -17271314 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1382 211 215 0 210 chr11 104572874 104572974 -17270882 - L2c LINE L2 0 3387 3309 1 1382 706 233 87 10 chr11 104573105 104573300 -17270556 - B3 SINE B2 -6 210 1 1 1382 574 227 0 16 chr11 104573305 104573426 -17270430 - B1F SINE Alu -1 148 30 1 1382 1391 158 145 14 chr11 104574022 104574298 -17269558 + MTB_Mm LTR MaLR 1 312 -95 1 1382 335 288 88 81 chr11 104575062 104575198 -17268658 + B1F SINE Alu 13 149 0 1 1382 1068 88 14 0 chr11 104575414 104575562 -17268294 - B2_Mm2 SINE B2 -45 150 1 1 1382 197 288 182 0 chr11 104575591 104575657 -17268199 - MIRm SINE MIR -42 234 157 1 1382 207 321 86 0 chr11 104575599 104575680 -17268176 - L2c LINE L2 -40 3347 3260 1 1382 451 253 165 0 chr11 104577230 104577491 -17266365 - L1M4c LINE L1 -874 5505 5202 1 1382 814 243 112 7 chr11 104577462 104577884 -17265972 - L1M4c LINE L1 -1826 4553 4075 1 1382 763 262 20 0 chr11 104577905 104578054 -17265802 - RSINE1 SINE B4 -11 154 3 1 1382 796 264 143 48 chr11 104578054 104578254 -17265602 - L1M4c LINE L1 -2265 4111 3870 1 1382 608 267 30 56 chr11 104578254 104578452 -17265404 + B3A SINE B2 1 193 -5 1 1382 796 264 143 48 chr11 104578452 104578832 -17265024 - L1M4c LINE L1 -2507 3869 3476 1 1382 809 251 4 106 chr11 104578865 104579101 -17264755 + B4 SINE B4 81 292 0 1 1382 315 0 0 0 chr11 104579103 104579138 -17264718 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1382 330 26 0 0 chr11 104579138 104579176 -17264680 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1382 470 303 15 22 chr11 104579341 104579476 -17264380 - ID_B1 SINE B4 -6 218 85 1 1382 343 333 61 6 chr11 104579486 104579667 -17264189 - L1M4c LINE L1 -4894 1490 1300 1 1382 660 236 45 15 chr11 104579722 104579920 -17263936 - B3 SINE B2 -12 204 1 1 1382 321 26 0 0 chr11 104580133 104580171 -17263685 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1382 698 278 54 22 chr11 104580582 104580619 -17263237 - B3A SINE B2 -6 192 157 1 1382 423 56 0 0 chr11 104580619 104580673 -17263183 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1382 698 278 54 22 chr11 104580673 104580819 -17263037 - B3A SINE B2 -42 156 4 1 1382 678 265 6 40 chr11 104583061 104583234 -17260622 + B4 SINE B4 122 288 -4 1 1382 516 59 0 0 chr11 104583254 104583322 -17260534 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1382 3220 96 21 4 chr11 104583697 104584168 -17259688 + Lx3_Mus LINE L1 6526 7004 -5 1 1382 1168 91 0 0 chr11 104584551 104584705 -17259151 + B2_Mm2 SINE B2 2 155 -40 1 1382 318 26 0 0 chr11 104584705 104584744 -17259112 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 1 1382 560 321 95 2 chr11 104584812 104585234 -17258622 - L1MC4a LINE L1 -5 7877 7417 1 1382 470 259 69 0 chr11 104585574 104585705 -17258151 + B1F SINE Alu 1 140 -9 1 1382 221 297 86 43 chr11 104586057 104586173 -17257683 + B4A SINE B4 2 122 -170 1 1382 824 134 6 0 chr11 104586629 104586800 -17257056 + (GA)n Simple_repeat Simple_repeat 1 172 0 1 1382 242 320 0 0 chr11 104587223 104587273 -17256583 + L2c LINE L2 3300 3349 -38 1 1382 187 175 35 0 chr11 104587355 104587412 -17256444 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1382 543 168 7 40 chr11 104587414 104587447 -17256409 + Lx9 LINE L1 7488 7517 -127 1 1382 378 61 0 0 chr11 104587447 104587496 -17256360 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1382 543 168 7 40 chr11 104587496 104587611 -17256245 + Lx9 LINE L1 7518 7631 -13 1 1382 1091 112 62 0 chr11 104587614 104587792 -17256064 + B2_Mm2 SINE B2 2 190 -5 2 1382 410 196 105 29 chr11 104588134 104588239 -17255617 + PB1D10 SINE Alu 5 117 0 2 1382 948 319 107 15 chr11 104588552 104589086 -17254770 - Lx8 LINE L1 -29 7444 6862 2 1382 23 78 0 0 chr11 104589102 104589153 -17254703 + AT_rich Low_complexity Low_complexity 1 51 0 2 1382 1221 106 0 0 chr11 104589262 104589442 -17254414 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1382 271 162 29 0 chr11 104589442 104589500 -17254356 + CT-rich Low_complexity Low_complexity 3 62 0 2 1382 972 164 0 0 chr11 104589535 104589675 -17254181 - B1_Mus2 SINE Alu -7 140 1 2 1382 262 320 0 0 chr11 104589683 104589758 -17254098 - Lx8 LINE L1 -228 7245 7171 2 1382 507 279 86 16 chr11 104589754 104589998 -17253858 + Lx8 LINE L1 6900 7160 -313 2 1382 768 201 7 0 chr11 104590051 104590190 -17253666 + B1_Mur2 SINE Alu 1 140 -9 2 1382 363 44 0 0 chr11 104590191 104590236 -17253620 + (GAAAA)n Simple_repeat Simple_repeat 4 48 0 2 1382 735 225 212 6 chr11 104590649 104590828 -17253028 + ID_B1 SINE B4 1 216 -8 2 1382 331 314 0 0 chr11 104591815 104591990 -17251866 + (TATG)n Simple_repeat Simple_repeat 1 175 0 2 1382 674 312 6 0 chr11 104592533 104592706 -17251150 - B3A SINE B2 -24 174 1 2 1382 889 167 28 0 chr11 104593712 104593856 -17250000 + B1_Mur2 SINE Alu 1 148 -1 2 1382 252 0 0 0 chr11 104594625 104594653 -17249203 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1382 337 280 55 85 chr11 104595083 104595386 -17248470 - L1M2 LINE L1 -827 5485 5187 2 1382 306 0 0 0 chr11 104595386 104595420 -17248436 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 172 337 280 45 104 chr11 104595420 104595586 -17248270 - L1M2 LINE L1 -957 5186 5037 2 1383 219 103 0 0 chr11 104595586 104595625 -17248231 + (T)n Simple_repeat Simple_repeat 1 39 0 2 1383 1847 226 42 70 chr11 104595639 104596166 -17247690 - RLTR18B LTR ERVK 0 512 1 2 1383 507 216 62 35 chr11 104596370 104596514 -17247342 + B1F SINE Alu 2 149 0 2 1383 318 106 0 0 chr11 104597205 104597252 -17246604 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1383 665 309 50 29 chr11 104597445 104597725 -17246131 + B4A SINE B4 2 287 -5 2 1383 404 205 13 32 chr11 104597811 104597967 -17245889 + GA-rich Low_complexity Low_complexity 3 155 0 2 1383 892 209 94 78 chr11 104598268 104598460 -17245396 - B3 SINE B2 0 195 1 2 1383 223 302 25 6 chr11 104598634 104598728 -17245128 + MIR SINE MIR 116 208 -54 2 1383 424 264 82 0 chr11 104598984 104599094 -17244762 + MER68 LTR ERVL 4 122 -441 2 1383 201 154 0 0 chr11 104599197 104599236 -17244620 + (ATG)n Simple_repeat Simple_repeat 1 39 0 2 1383 602 287 24 42 chr11 104599245 104599412 -17244444 - RSINE1 SINE B4 -1 164 1 2 1383 869 56 0 68 chr11 104599718 104599910 -17243946 + (TCC)n Simple_repeat Simple_repeat 2 180 0 2 1383 534 88 8 60 chr11 104599916 104600049 -17243807 + CT-rich Low_complexity Low_complexity 3 128 0 2 1383 227 277 15 0 chr11 104600790 104600855 -17243001 + MLT1A LTR MaLR 66 131 -243 2 1383 201 154 0 0 chr11 104601285 104601324 -17242532 + CT-rich Low_complexity Low_complexity 2 40 0 2 1383 414 108 0 0 chr11 104601486 104601551 -17242305 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 2 1383 224 290 0 31 chr11 104601603 104601667 -17242189 + PB1D10 SINE Alu 56 117 0 2 1383 280 292 196 7 chr11 104602187 104602335 -17241521 - B3A SINE B2 -18 180 5 2 1383 885 246 14 0 chr11 104602491 104602702 -17241154 - B3 SINE B2 -2 214 1 2 1383 218 136 60 15 chr11 104602903 104602970 -17240886 + CT-rich Low_complexity Low_complexity 3 72 0 2 1383 422 309 50 33 chr11 104603254 104603435 -17240421 + MER20 DNA MER1_type 35 218 -1 2 1383 621 0 0 0 chr11 104603475 104603544 -17240312 + (TTCTC)n Simple_repeat Simple_repeat 1 69 0 2 1383 1467 34 0 0 chr11 104603554 104603731 -17240125 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 1383 945 196 77 0 chr11 104603885 104604079 -17239777 + B3 SINE B2 1 209 -7 2 1383 373 23 0 0 chr11 104604242 104604286 -17239570 - ORR1A2 LTR MaLR 0 326 283 2 1383 2045 82 65 0 chr11 104604286 104604580 -17239276 - ORR1A2 LTR MaLR -14 313 1 2 1383 240 143 0 0 chr11 104604969 104605011 -17238845 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 2 1383 486 255 118 21 chr11 104605113 104605347 -17238509 - L1_Rod LINE L1 -476 5824 5555 2 1383 2813 102 78 16 chr11 104605737 104606185 -17237671 + Lx LINE L1 6176 6651 -3 2 1383 345 281 91 0 chr11 104607027 104607148 -17236708 + MTC LTR MaLR 290 421 0 2 1383 683 221 0 7 chr11 104607326 104607472 -17236384 - B1_Mur2 SINE Alu 0 149 5 2 1383 216 229 47 9 chr11 104607751 104607857 -17235999 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 1383 315 324 47 20 chr11 104608344 104608492 -17235364 - B3A SINE B2 0 198 47 2 1383 612 258 22 38 chr11 104608698 104608883 -17234973 - B3A SINE B2 -16 182 1 2 1383 1203 107 0 0 chr11 104609087 104609265 -17234591 + (TTTCC)n Simple_repeat Simple_repeat 1 178 0 2 1383 629 151 0 82 chr11 104609270 104609376 -17234480 + polypyrimidine Low_complexity Low_complexity 76 180 0 2 1383 1065 145 0 0 chr11 104609376 104609555 -17234301 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 2 1383 629 151 0 82 chr11 104609555 104609643 -17234213 + polypyrimidine Low_complexity Low_complexity 2 75 0 2 1383 1355 82 0 6 chr11 104609643 104609826 -17234030 - B2_Mm2 SINE B2 -9 186 5 2 1383 234 0 0 0 chr11 104610472 104610498 -17233358 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1383 192 77 0 0 chr11 104611122 104611148 -17232708 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1383 895 244 23 0 chr11 104611155 104611327 -17232529 - B3A SINE B2 -22 176 1 2 1383 264 286 0 0 chr11 104611433 104611489 -17232367 - PB1 SINE Alu -71 56 1 2 1383 1668 226 7 83 chr11 104611839 104612249 -17231607 - MTEb LTR MaLR 0 379 1 2 1383 307 78 65 37 chr11 104612374 104612481 -17231375 + (TA)n Simple_repeat Simple_repeat 2 111 0 2 1383 547 281 126 10 chr11 104612801 104612999 -17230857 + MIR SINE MIR 9 229 -33 2 1383 299 65 22 0 chr11 104613811 104613857 -17229999 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1383 522 259 94 40 chr11 104613861 104614010 -17229846 - B3A SINE B2 -41 157 1 2 1383 386 116 94 6 chr11 104614432 104614506 -17229350 - ORR1B2 LTR MaLR -286 98 1 2 1383 233 299 45 0 chr11 104614589 104614656 -17229200 - MER106B DNA MER1_type -59 1000 931 2 1383 310 325 24 0 chr11 104614652 104614735 -17229121 - MER106B DNA MER1_type -966 93 9 2 1383 7651 156 68 12 chr11 104615279 104616391 -17227465 - Lx5 LINE L1 -3 7047 5844 2 1383 2813 47 9 3 chr11 104616391 104616735 -17227121 - ORR1A1 LTR MaLR 0 346 1 2 1383 7651 200 20 150 chr11 104616735 104618039 -17225817 - Lx5 LINE L1 -37 5843 4553 2 1383 333 0 0 0 chr11 104618039 104618076 -17225780 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2 1383 7651 200 20 150 chr11 104618076 104619965 -17223891 - Lx5 LINE L1 -1328 4552 3067 2 1383 219 88 0 0 chr11 104619965 104619999 -17223857 + (CTG)n Simple_repeat Simple_repeat 2 35 0 2 1383 300 172 0 0 chr11 104619999 104620057 -17223799 + C-rich Low_complexity Low_complexity 1 58 0 2 1383 216 86 0 0 chr11 104620057 104620092 -17223764 + (CTG)n Simple_repeat Simple_repeat 2 36 0 2 1383 7019 68 42 0 chr11 104620105 104620473 -17223383 - MusHAL1 LINE L1 -57 2655 2288 2 1383 216 0 0 0 chr11 104620473 104620497 -17223359 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 1383 7019 68 42 0 chr11 104620497 104621135 -17222721 - MusHAL1 LINE L1 -425 2287 1608 2 1383 2083 143 3 0 chr11 104621139 104621496 -17222360 - Lx5 LINE L1 -2840 3037 2680 2 1383 348 83 0 0 chr11 104621745 104621793 -17222063 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1383 694 212 139 12 chr11 104621994 104622238 -17221618 - L1MA9 LINE L1 -244 6068 5794 2 1383 452 242 21 0 chr11 104622248 104622343 -17221513 - B1F SINE Alu -7 142 46 2 1383 213 229 0 0 chr11 104622344 104622379 -17221477 + B4A SINE B4 90 124 -168 2 1383 355 363 82 62 chr11 104622420 104622822 -17221034 + L1M5 LINE L1 4549 4958 -1188 2 1383 750 166 20 46 chr11 104622860 104623012 -17220844 + B1_Mus1 SINE Alu 1 148 0 2 1383 258 81 0 0 chr11 104623023 104623060 -17220796 + (CCA)n Simple_repeat Simple_repeat 1 37 0 2 1383 333 109 0 0 chr11 104623051 104623106 -17220750 + (CCAA)n Simple_repeat Simple_repeat 1 55 0 2 1383 871 217 89 20 chr11 104623299 104623501 -17220355 - B3 SINE B2 0 216 1 2 1383 720 256 92 0 chr11 104624027 104624254 -17219602 - Lx6 LINE L1 -26 7434 7187 2 1383 231 114 0 0 chr11 104624374 104624409 -17219447 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1383 790 196 81 7 chr11 104624474 104624623 -17219233 - MTC LTR MaLR -65 356 197 2 1383 479 234 94 16 chr11 104624639 104624830 -17219026 - Lx9 LINE L1 0 7644 7439 2 1383 455 282 87 7 chr11 104625206 104625356 -17218500 - B4A SINE B4 -24 268 107 2 1383 355 296 14 35 chr11 104625458 104625590 -17218266 - ID_B1 SINE B4 -162 130 1 2 1383 310 300 178 109 chr11 104625775 104625956 -17217900 + B4 SINE B4 1 196 -96 2 1383 5258 33 14 6 chr11 104625956 104626600 -17217256 + L1Md_F3 LINE L1 5936 6584 0 2 1383 310 300 178 109 chr11 104626600 104626620 -17217236 + B4 SINE B4 197 216 -76 2 1383 742 295 24 0 chr11 104627530 104627737 -17216119 - ID_B1 SINE B4 -8 216 5 2 1383 1403 61 39 0 chr11 104627880 104628060 -17215796 - B2_Mm2 SINE B2 -8 187 1 2 1383 351 314 205 20 chr11 104628967 104629376 -17214480 + L1MEg LINE L1 783 1267 -4817 2 1383 189 0 0 0 chr11 104630068 104630089 -17213767 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1383 270 0 0 0 chr11 104630268 104630298 -17213558 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1383 988 217 14 5 chr11 104630614 104630827 -17213029 - B3 SINE B2 0 216 2 2 1383 234 0 0 0 chr11 104630860 104630886 -17212970 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1383 2726 125 11 40 chr11 104631707 104632157 -17211699 - Lx3B LINE L1 -1 6972 6536 2 1383 379 195 34 22 chr11 104632511 104632600 -17211256 - HAL1-2a_MD LINE L1 -522 2502 2413 2 1383 714 286 96 23 chr11 104632663 104632924 -17210932 - B4 SINE B4 -9 283 4 3 1383 544 271 8 14 chr11 104632990 104633162 -17210694 - B4A SINE B4 0 292 121 3 1383 698 283 108 44 chr11 104633566 104634332 -17209524 - L1MA7 LINE L1 -2 6289 5475 3 1383 192 213 0 0 chr11 104634336 104634397 -17209459 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1383 311 120 60 0 chr11 104634397 104634447 -17209409 - HAL1-3A_ME LINE L1 -830 2028 1976 3 1383 332 292 129 12 chr11 104634456 104634712 -17209144 - B4A SINE B4 -2 290 5 3 1383 544 302 112 25 chr11 104635561 104636034 -17207822 - L1ME1 LINE L1 -291 5888 5375 3 1383 330 200 170 0 chr11 104636051 104636186 -17207670 - L1ME1 LINE L1 -816 5330 5173 3 1383 1343 181 40 14 chr11 104636183 104636480 -17207376 - Lx5 LINE L1 -1058 5992 5688 3 1383 1137 287 20 48 chr11 104636475 104636826 -17207030 + Lx5 LINE L1 6674 7014 -36 3 1383 264 252 32 24 chr11 104636844 104636970 -17206886 - L1ME1 LINE L1 -979 5167 5041 3 1383 261 291 25 0 chr11 104637240 104637319 -17206537 - PB1 SINE Alu -3 124 44 3 1383 311 308 134 30 chr11 104637770 104637904 -17205952 - B1F1 SINE Alu -1 148 1 3 1383 23 0 0 0 chr11 104638318 104638341 -17205515 + AT_rich Low_complexity Low_complexity 1 23 0 3 1383 585 316 29 17 chr11 104638625 104638799 -17205057 + ID_B1 SINE B4 5 180 -44 3 1383 365 283 9 26 chr11 104639502 104639618 -17204238 + Tigger5 DNA MER2_type 2239 2352 -54 3 1383 3152 38 0 0 chr11 104639636 104640056 -17203800 - L1Md_F2 LINE L1 0 6582 6166 3 1383 718 286 56 52 chr11 104640402 104640767 -17203089 - RLTR16 LTR ERVK -256 436 24 3 1383 660 26 0 0 chr11 104641410 104641488 -17202368 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 1383 214 217 43 21 chr11 104641490 104641537 -17202319 - ID4_ SINE ID -11 72 25 3 1383 465 103 0 0 chr11 104641612 104641680 -17202176 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1383 430 262 51 95 chr11 104641737 104642011 -17201845 - L1M2 LINE L1 -1030 5113 4852 3 1383 333 0 0 0 chr11 104642692 104642729 -17201127 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 1383 691 217 80 0 chr11 104642744 104642882 -17200974 - B1_Mur4 SINE Alu 0 150 2 3 1383 369 167 0 40 chr11 104643361 104643461 -17200395 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 3 1383 214 250 0 0 chr11 104644082 104644146 -17199710 + A-rich Low_complexity Low_complexity 3 66 0 3 1383 312 27 0 0 chr11 104644180 104644217 -17199639 + (CCA)n Simple_repeat Simple_repeat 1 37 0 3 1383 270 0 0 0 chr11 104644804 104644834 -17199022 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 3 1383 913 130 0 0 chr11 104644834 104644965 -17198891 - B1_Mus1 SINE Alu -12 136 6 3 1383 817 219 20 0 chr11 104645321 104645472 -17198384 - RSINE1 SINE B4 -2 163 10 3 1383 275 188 0 0 chr11 104645474 104645522 -17198334 - RSINE1 SINE B4 -113 52 5 3 1383 29 28 0 0 chr11 104645599 104645635 -17198221 + AT_rich Low_complexity Low_complexity 1 36 0 3 1383 223 181 28 0 chr11 104646607 104646679 -17197177 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1383 1151 69 7 0 chr11 104647307 104647452 -17196404 + B1_Mus2 SINE Alu 1 146 -1 3 1383 359 54 26 39 chr11 104647452 104647529 -17196327 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 3 1383 195 100 0 0 chr11 104647590 104647620 -17196236 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1383 192 77 0 0 chr11 104647917 104647943 -17195913 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1383 5839 71 21 1 chr11 104647979 104648756 -17195100 - L1_Mus3 LINE L1 0 6638 5847 3 1383 721 242 5 104 chr11 104648789 104649001 -17194855 - B3A SINE B2 -5 193 3 3 1383 402 291 192 24 chr11 104649325 104649575 -17194281 - L1M5 LINE L1 -3182 2964 2673 3 1383 398 322 103 19 chr11 104650478 104650994 -17192862 - L1MC4 LINE L1 -365 7677 7119 3 1383 1335 83 0 0 chr11 104651149 104651669 -17192187 + (TG)n Simple_repeat Simple_repeat 1 520 0 3 1383 443 274 124 0 chr11 104651671 104651784 -17192072 - RSINE1 SINE B4 -28 137 11 3 1383 251 73 0 47 chr11 104651842 104651885 -17191971 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1383 315 163 0 0 chr11 104651885 104651934 -17191922 - B1_Mus2 SINE Alu -10 137 89 3 1383 27 29 0 0 chr11 104652266 104652300 -17191556 + AT_rich Low_complexity Low_complexity 1 34 0 3 1383 802 218 39 16 chr11 104652303 104652485 -17191371 - B3A SINE B2 -11 187 2 3 1383 943 209 49 10 chr11 104652864 104653067 -17190789 - B3 SINE B2 -5 211 1 3 1383 25 0 0 0 chr11 104653111 104653136 -17190720 + AT_rich Low_complexity Low_complexity 1 25 0 3 1383 371 286 44 0 chr11 104653449 104653540 -17190316 + ID_B1 SINE B4 2 96 -128 3 1383 351 0 0 0 chr11 104653587 104653626 -17190230 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 1383 401 194 0 0 chr11 104653645 104653712 -17190144 - ID4_ SINE ID -14 69 3 3 1383 1369 270 50 24 chr11 104654267 104654882 -17188974 - L1M2 LINE L1 -1116 5027 4397 3 1383 762 254 90 21 chr11 104654882 104655115 -17188741 - MTD-int LTR MaLR -1009 249 1 3 1383 1771 223 36 24 chr11 104655115 104655529 -17188327 - MTD LTR MaLR 0 419 1 3 1383 185 311 193 0 chr11 104656006 104656125 -17187731 - MIR SINE MIR -14 248 107 3 1383 26 0 0 0 chr11 104656311 104656337 -17187519 + AT_rich Low_complexity Low_complexity 1 26 0 3 1383 491 290 58 67 chr11 104656519 104656952 -17186904 - L1MA4 LINE L1 -386 5914 5486 3 1383 662 257 16 149 chr11 104657033 104657123 -17186733 + B3 SINE B2 1 69 -147 3 1383 1021 97 28 0 chr11 104657123 104657267 -17186589 - B1_Mus1 SINE Alu 0 148 1 3 1383 662 257 16 149 chr11 104657267 104657418 -17186438 + B3 SINE B2 70 210 -6 3 1383 1283 74 17 6 chr11 104657437 104657614 -17186242 + B2_Mm2 SINE B2 8 186 -9 3 1383 601 247 188 27 chr11 104657790 104658119 -17185737 - Charlie1a DNA MER1_type -10 1445 1064 3 1383 524 265 128 34 chr11 104658119 104658440 -17185416 + L1MA4 LINE L1 5539 5889 -411 3 1383 4980 94 46 0 chr11 104659431 104660166 -17183690 - Lx LINE L1 -279 6375 5607 3 1383 5753 87 24 20 chr11 104660155 104661597 -17182259 - L1VL2 LINE L1 -2106 1509 65 3 1383 288 255 53 6 chr11 104662129 104662266 -17181590 + L1MA8 LINE L1 5739 5886 -405 3 1383 2017 257 190 125 chr11 104662266 104662793 -17181063 - RLTR22_Mur LTR ERVK -210 1638 831 3 1383 279 0 0 0 chr11 104662793 104662824 -17181032 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1383 2017 249 258 92 chr11 104662824 104663934 -17179922 - RLTR22_Mur LTR ERVK -529 1319 1 3 1383 311 170 0 0 chr11 104663935 104663988 -17179868 + L1MA8 LINE L1 5882 5934 -357 3 1383 466 258 85 9 chr11 104664019 104664230 -17179626 + Lx7 LINE L1 7470 7696 0 3 1383 22 35 0 0 chr11 104664690 104664719 -17179137 + AT_rich Low_complexity Low_complexity 1 29 0 3 1383 205 355 68 40 chr11 104666751 104666927 -17176929 - L2a LINE L2 -4 3422 3242 3 1383 546 78 0 0 chr11 104667318 104667395 -17176461 - L1Md_F2 LINE L1 -361 6221 6145 3 1383 787 77 98 15 chr11 104667396 104667528 -17176328 + L1Md_F2 LINE L1 6439 6581 -1 3 1383 601 253 236 0 chr11 104667734 104667944 -17175912 + B4A SINE B4 1 259 -33 3 1383 410 0 20 0 chr11 104667960 104668010 -17175846 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1383 228 235 145 14 chr11 104668143 104668212 -17175644 + ZP3AR Satellite Satellite 28 105 -107 3 1383 466 177 0 0 chr11 104668154 104668233 -17175623 + BC1_Mm scRNA scRNA 2 80 -72 3 1383 267 255 59 121 chr11 104668342 104668461 -17175395 + MLT1A1 LTR MaLR 207 361 -47 3 1383 606 93 0 0 chr11 104668499 104668585 -17175271 + (TCCC)n Simple_repeat Simple_repeat 4 89 0 3 1383 937 250 7 4 chr11 104668654 104668866 -17174990 - B3A SINE B2 -1 215 7 3 1383 245 250 27 42 chr11 104669202 104669289 -17174567 + B1F1 SINE Alu 3 83 -66 3 1383 223 317 0 12 chr11 104669301 104669384 -17174472 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1383 34860 61 4 3 chr11 104669384 104675585 -17168271 - L1Md_F3 LINE L1 -3 6581 420 3 1383 461 271 73 8 chr11 104675585 104675708 -17168148 - RSINE1 SINE B4 -32 133 3 3 1383 204 318 0 0 chr11 104676042 104676130 -17167726 + (CTGGGG)n Simple_repeat Simple_repeat 3 90 0 3 1383 395 0 0 163 chr11 104676133 104676348 -17167508 + (CGGAG)n Simple_repeat Simple_repeat 1 180 0 3 1383 442 314 0 0 chr11 104676378 104676480 -17167376 + (CTGGGG)n Simple_repeat Simple_repeat 1 102 0 3 1383 1458 205 35 4 chr11 104677160 104677497 -17166359 - MTD LTR MaLR -19 402 18 3 1383 258 342 13 0 chr11 104678235 104678314 -17165542 - L1M3e LINE L1 -6751 279 200 3 1383 446 246 8 25 chr11 104678334 104678455 -17165401 - L1M3e LINE L1 -6905 125 7 3 1383 385 221 26 13 chr11 104678792 104678870 -17164986 + HAL1-3A_ME LINE L1 1975 2053 -805 3 1383 578 14 14 0 chr11 104679138 104679209 -17164647 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1383 458 282 51 44 chr11 104679257 104679394 -17164462 - B4 SINE B4 0 292 155 3 1383 246 327 78 42 chr11 104679461 104679681 -17164175 - MIR SINE MIR 0 262 40 3 1383 22 0 0 0 chr11 104680962 104680984 -17162872 + AT_rich Low_complexity Low_complexity 1 22 0 3 1383 449 272 153 7 chr11 104680994 104681131 -17162725 + RSINE1 SINE B4 3 159 -6 3 1383 384 48 15 31 chr11 104681140 104681205 -17162651 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1383 252 0 0 0 chr11 104681520 104681548 -17162308 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1383 703 0 0 0 chr11 104681551 104681632 -17162224 - B1_Mm SINE Alu -12 135 55 3 1383 242 185 83 97 chr11 104681583 104681655 -17162201 - RLTR25A LTR ERVK -521 582 512 3 1383 241 284 196 0 chr11 104682154 104682256 -17161600 + MER2B DNA MER2_type 166 287 -49 3 1383 546 232 124 4 chr11 104682268 104682541 -17161315 - L1MA5 LINE L1 -1 6299 5994 3 1383 243 0 0 0 chr11 104682898 104682925 -17160931 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1383 1115 82 0 13 chr11 104682935 104683084 -17160772 + B1_Mus1 SINE Alu 2 148 0 3 1383 557 209 162 15 chr11 104683104 104683308 -17160548 - L1PB4 LINE L1 -221 5935 5702 4 1383 1614 176 45 52 chr11 104683318 104683686 -17160170 - RLTR31A_Mm LTR ERVK 0 557 177 4 1383 1314 245 161 38 chr11 104683729 104684798 -17159058 - L1M2 LINE L1 -2053 4090 2890 4 1383 2100 163 70 29 chr11 104684799 104685321 -17158535 - RMER4B LTR ERVK 0 585 7 4 1383 7927 179 41 47 chr11 104685321 104687165 -17156691 - MurERV4-int LTR ERVK -3488 1772 210 4 1383 1308 40 17 0 chr11 104687165 104687340 -17156516 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 1383 7927 181 48 56 chr11 104687340 104687555 -17156301 - MurERV4-int LTR ERVK -5051 209 1 4 1383 2800 147 84 26 chr11 104687555 104688093 -17155763 - RMER4B LTR ERVK 0 585 17 4 1383 1076 256 69 10 chr11 104688118 104688599 -17155257 - L1M2 LINE L1 -3267 2876 2368 4 1383 376 316 38 100 chr11 104688804 104689127 -17154729 - L1ME2 LINE L1 -169 5995 5685 4 1383 679 307 146 44 chr11 104689487 104690097 -17153759 - L1ME2 LINE L1 -2673 3473 2801 4 1383 939 263 74 121 chr11 104690916 104691413 -17152443 - RLTR12B LTR ERVK -31 497 24 4 1383 1133 179 19 0 chr11 104691779 104691986 -17151870 + B3 SINE B2 2 212 -4 4 1383 255 170 0 0 chr11 104692047 104692094 -17151762 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1383 1236 104 16 16 chr11 104692782 104692967 -17150889 - B2_Mm2 SINE B2 -9 186 2 4 1383 517 270 90 42 chr11 104693052 104693218 -17150638 + MER2 DNA MER2_type 156 329 -16 4 1383 345 287 80 22 chr11 104693666 104693814 -17150042 - Lx8 LINE L1 -15 7629 7466 4 1383 207 100 0 0 chr11 104693814 104693844 -17150012 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1383 1941 311 82 15 chr11 104693844 104694701 -17149155 - Lx8 LINE L1 -179 7465 6420 4 1383 196 53 53 0 chr11 104694766 104694804 -17149052 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1383 6903 34 1 0 chr11 104694936 104695750 -17148106 + L1Md_F2 LINE L1 5763 6577 -5 4 1383 552 300 36 31 chr11 104695819 104696015 -17147841 + Lx8 LINE L1 7129 7325 -148 4 1383 2510 74 6 0 chr11 104696396 104696721 -17147135 - ORR1A2 LTR MaLR 0 327 1 4 1383 489 230 28 115 chr11 104697426 104697608 -17146248 - RMER15 LTR ERVL -47 528 363 4 1383 1618 204 35 20 chr11 104697615 104698045 -17145811 - Lx4B LINE L1 -110 6948 6601 4 1383 7996 154 137 60 chr11 104698027 104699328 -17144528 - L1_Mur1 LINE L1 -2340 3537 2054 4 1383 495 0 0 0 chr11 104699328 104699383 -17144473 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1383 351 0 0 0 chr11 104699383 104699421 -17144435 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1383 7996 154 137 60 chr11 104699421 104699867 -17143989 - L1_Mur1 LINE L1 -3824 2053 1672 4 1383 261 0 0 0 chr11 104699867 104699896 -17143960 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1383 7996 153 111 31 chr11 104699896 104700439 -17143417 - L1_Mur1 LINE L1 -4206 1671 1058 4 1383 234 302 11 34 chr11 104700462 104700551 -17143305 - B3A SINE B2 -107 91 5 4 1383 26 64 0 0 chr11 104700993 104701040 -17142816 + AT_rich Low_complexity Low_complexity 1 47 0 4 1383 21 0 0 0 chr11 104701394 104701415 -17142441 + AT_rich Low_complexity Low_complexity 1 21 0 4 1383 411 21 0 0 chr11 104701604 104701652 -17142204 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1383 647 228 169 22 chr11 104701770 104701954 -17141902 - B3 SINE B2 -4 212 2 4 1383 774 316 31 4 chr11 104701954 104702176 -17141680 - B4 SINE B4 -63 229 2 4 1383 886 204 12 6 chr11 104702616 104702784 -17141072 - B3 SINE B2 -2 214 46 4 1383 250 186 0 0 chr11 104702747 104702790 -17141066 - B4 SINE B4 -210 82 40 4 1383 985 200 141 53 chr11 104702794 104703103 -17140753 - RLTR16 LTR ERVK 0 505 164 4 1383 578 262 14 14 chr11 104703433 104703576 -17140280 + B1_Mur1 SINE Alu 2 144 -5 4 1383 21 0 0 0 chr11 104703678 104703699 -17140157 + AT_rich Low_complexity Low_complexity 1 21 0 4 1383 869 235 10 29 chr11 104705549 104705755 -17138101 + B3 SINE B2 1 202 -14 4 1383 339 235 12 12 chr11 104706360 104706442 -17137414 + ID4 SINE ID 2 83 0 4 1383 22 0 0 0 chr11 104707025 104707047 -17136809 + AT_rich Low_complexity Low_complexity 1 22 0 4 1383 872 193 0 0 chr11 104707147 104707297 -17136559 - B1_Mur4 SINE Alu 0 150 1 4 1383 370 301 0 0 chr11 104707314 104707397 -17136459 - B4 SINE B4 -208 84 2 4 1383 587 260 8 8 chr11 104707445 104707569 -17136287 - B1F2 SINE Alu -25 124 1 4 1383 323 326 10 30 chr11 104707837 104707938 -17135918 - RSINE1 SINE B4 0 165 67 4 1383 337 238 48 0 chr11 104707931 104708015 -17135841 + B1_Mur1 SINE Alu 62 149 0 4 1383 341 316 68 19 chr11 104708245 104708406 -17135450 - L1ME3B LINE L1 -252 5988 5820 4 1383 221 0 0 33 chr11 104708955 104708985 -17134871 + (TAA)n Simple_repeat Simple_repeat 1 29 0 4 1383 21 0 0 0 chr11 104709473 104709494 -17134362 + AT_rich Low_complexity Low_complexity 1 21 0 4 1383 1152 63 0 0 chr11 104710780 104710922 -17132934 + B1_Mus1 SINE Alu 2 143 -5 4 1383 886 157 0 7 chr11 104711245 104711386 -17132470 - B1_Mur3 SINE Alu -5 144 5 4 1383 705 282 89 106 chr11 104712623 104713106 -17130750 - RLTR12B LTR ERVK -29 499 25 4 1383 3096 20 0 0 chr11 104713159 104713505 -17130351 - ORR1A0 LTR MaLR 0 346 1 4 1383 666 257 0 29 chr11 104713519 104713659 -17130197 - ID_B1 SINE B4 -4 220 85 4 1383 270 283 40 0 chr11 104714211 104714310 -17129546 + GA-rich Low_complexity Low_complexity 3 105 0 4 1383 375 23 0 0 chr11 104714767 104714811 -17129045 + (CCA)n Simple_repeat Simple_repeat 3 46 0 4 1383 356 164 0 0 chr11 104714971 104715026 -17128830 + B1_Mur1 SINE Alu 78 132 -17 4 1383 551 160 6 19 chr11 104715266 104715425 -17128431 + CT-rich Low_complexity Low_complexity 2 158 0 4 1383 609 264 25 13 chr11 104715436 104715593 -17128263 - RSINE1 SINE B4 0 165 7 4 1383 284 320 152 0 chr11 104716010 104716135 -17127721 - RSINE1 SINE B4 -17 148 5 4 1383 189 0 0 0 chr11 104716414 104716435 -17127421 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1383 346 392 84 0 chr11 104717057 104717223 -17126633 + MER58A DNA MER1_type 9 188 -36 4 1383 180 111 0 0 chr11 104718403 104718430 -17125426 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1383 1594 183 64 20 chr11 104718447 104718804 -17125052 + Lx4A LINE L1 6686 7058 0 4 1383 842 270 7 6 chr11 104718903 104719130 -17124726 + Lx8 LINE L1 6221 6556 -1088 4 1383 315 0 0 0 chr11 104719267 104719302 -17124554 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1383 288 0 0 0 chr11 104720066 104720098 -17123758 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1383 198 103 0 0 chr11 104720324 104720353 -17123503 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1383 2715 31 3 58 chr11 104720928 104721274 -17122582 - IAPLTR2b LTR ERVK 0 327 1 4 1383 6000 66 15 1 chr11 104721276 104722092 -17121764 - IAPEz-int LTR ERVK -2 6479 5653 4 1383 2548 67 0 3 chr11 104722087 104722430 -17121426 - IAPEz-int LTR ERVK -4781 1700 1359 4 1383 3639 63 2 18 chr11 104722430 104722933 -17120923 - IAPEz-int LTR ERVK -5819 662 168 4 1383 226 327 0 0 chr11 104722933 104722988 -17120868 - RLTR27 LTR ERVK -34 275 221 4 1383 980 121 76 60 chr11 104722988 104723245 -17120611 - IAPEz-int LTR ERVK -7331 250 10 4 1383 323 94 0 0 chr11 104723245 104723298 -17120558 - IAPEz-int LTR ERVK -1932 55 3 4 1383 2610 40 12 58 chr11 104723300 104723643 -17120213 - IAPLTR2b LTR ERVK 0 327 1 4 1383 2045 118 0 113 chr11 104723975 104724346 -17119510 - ORR1A4 LTR MaLR 0 329 1 4 1383 8227 144 69 81 chr11 104724346 104724596 -17119260 - ORR1A4-int LTR MaLR 0 1963 1771 4 1383 3140 53 167 0 chr11 104724596 104725026 -17118830 - RLTR44C LTR ERVK 0 502 1 4 1383 8227 144 69 81 chr11 104725026 104726383 -17117473 - ORR1A4-int LTR MaLR -193 1770 354 4 1383 198 0 0 0 chr11 104726383 104726405 -17117451 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 172 8227 144 69 81 chr11 104726405 104726560 -17117296 - ORR1A4-int LTR MaLR -1610 353 222 4 1384 383 123 0 0 chr11 104726560 104726617 -17117239 + L1_Mur2 LINE L1 5171 5227 -650 4 1384 1652 174 17 88 chr11 104726617 104726969 -17116887 - ORR1A4 LTR MaLR -27 367 41 4 1384 892 255 51 34 chr11 104726976 104727268 -17116588 - Lx9 LINE L1 -573 7071 6775 4 1384 450 284 197 3 chr11 104727282 104727572 -17116284 + L1_Mur3 LINE L1 5221 5566 -314 4 1384 340 341 137 39 chr11 104727647 104727983 -17115873 + L1M5 LINE L1 5268 5636 -604 4 1384 265 276 0 0 chr11 104728120 104728196 -17115660 + L1MC LINE L1 5709 5784 -2098 4 1384 29 60 0 0 chr11 104730210 104730260 -17113596 + AT_rich Low_complexity Low_complexity 1 50 0 4 1384 23 33 0 0 chr11 104730747 104730777 -17113079 + AT_rich Low_complexity Low_complexity 1 30 0 4 1384 198 0 0 0 chr11 104732312 104732334 -17111522 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 4 1384 232 183 180 70 chr11 104733355 104733455 -17110401 - MER57D LTR ERV1 -15 396 286 4 1384 365 273 10 10 chr11 104733464 104733564 -17110292 - PB1D10 SINE Alu 0 117 18 4 1384 231 203 0 0 chr11 104733697 104733761 -17110095 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1384 542 244 81 28 chr11 104733807 104734001 -17109855 - B4 SINE B4 -1 291 82 4 1384 393 39 0 0 chr11 104734002 104734053 -17109803 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1384 774 47 9 19 chr11 104734053 104734161 -17109695 - B1_Mus2 SINE Alu 0 147 41 4 1384 744 147 42 49 chr11 104734222 104734365 -17109491 - B4A SINE B4 -149 143 2 4 1384 428 316 0 8 chr11 104734925 104735043 -17108813 - MER45C DNA Tip100 -786 167 51 4 1384 213 265 57 29 chr11 104735167 104735237 -17108619 + PB1D10 SINE Alu 34 105 -12 4 1384 339 186 0 0 chr11 104735239 104735341 -17108515 + CT-rich Low_complexity Low_complexity 1 102 0 4 1384 552 130 0 0 chr11 104736460 104736552 -17107304 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1384 448 45 15 15 chr11 104736562 104736630 -17107226 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 4 1384 662 264 119 0 chr11 104736735 104736928 -17106928 + B3 SINE B2 1 216 0 4 1384 1127 207 5 0 chr11 104736948 104737136 -17106720 + B3 SINE B2 21 209 -7 4 1384 21 0 0 0 chr11 104737137 104737158 -17106698 + AT_rich Low_complexity Low_complexity 1 21 0 4 1384 493 298 148 53 chr11 104737274 104737303 -17106553 + B4A SINE B4 5 38 -254 4 1384 1751 185 97 0 chr11 104737303 104737643 -17106213 + ORR1D1 LTR MaLR 1 373 -1 4 1384 493 298 148 53 chr11 104737643 104737821 -17106035 + B4A SINE B4 39 232 -60 4 1384 519 236 9 9 chr11 104737821 104737932 -17105924 + RSINE1 SINE B4 2 112 -53 4 1384 247 275 0 0 chr11 104738374 104738443 -17105413 + ID4_ SINE ID 1 69 -14 4 1384 236 283 11 11 chr11 104740358 104740451 -17103405 - L1M5 LINE L1 -342 5820 5728 4 1384 829 20 6 63 chr11 104740820 104740978 -17102878 + (TCTCCC)n Simple_repeat Simple_repeat 4 152 0 4 1384 309 109 0 0 chr11 104741950 104741996 -17101860 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1384 282 351 0 0 chr11 104742193 104742307 -17101549 + Lx8 LINE L1 7182 7295 -178 4 1384 237 235 136 48 chr11 104742508 104742611 -17101245 + PB1D10 SINE Alu 1 112 -5 5 1384 408 40 0 0 chr11 104742631 104742681 -17101175 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 5 1384 525 286 15 0 chr11 104743125 104743258 -17100598 - RSINE1 SINE B4 -12 153 19 5 1384 700 161 329 0 chr11 104743659 104743814 -17100042 + B3 SINE B2 1 206 -10 5 1384 22 56 0 0 chr11 104744031 104744067 -17099789 + AT_rich Low_complexity Low_complexity 1 36 0 5 1384 1935 196 17 8 chr11 104745538 104745899 -17097957 - RLTR17 LTR ERVK -328 364 1 5 1384 957 215 53 14 chr11 104745916 104746124 -17097732 - B3 SINE B2 0 216 1 5 1384 189 272 42 42 chr11 104746481 104746577 -17097279 + L3 LINE CR1 2109 2204 -2285 5 1384 934 192 66 15 chr11 104746616 104746812 -17097044 + B3 SINE B2 1 206 -10 5 1384 257 89 22 0 chr11 104746812 104746857 -17096999 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 5 1384 330 333 23 0 chr11 104747198 104747285 -17096571 - RSINE1 SINE B4 -70 95 7 5 1384 344 248 68 42 chr11 104747550 104747668 -17096188 - L1M5 LINE L1 -785 5388 5268 5 1384 279 247 114 25 chr11 104747675 104747754 -17096102 - MER58B DNA MER1_type 0 341 256 5 1384 34149 70 4 9 chr11 104747843 104753906 -17089950 - L1Md_F2 LINE L1 -3 6579 554 5 1384 261 227 110 30 chr11 104754171 104754271 -17089585 - L1M5 LINE L1 -1068 5078 4971 5 1384 527 269 83 17 chr11 104755363 104755651 -17088205 + L1M3 LINE L1 3018 3324 -2816 5 1384 1325 200 48 61 chr11 104755976 104756370 -17087486 + Lx9 LINE L1 7249 7637 -7 5 1384 288 251 112 12 chr11 104756382 104756551 -17087305 + L1MA7 LINE L1 6096 6281 -10 5 1384 180 49 98 0 chr11 104756950 104756991 -17086865 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 5 1384 517 312 0 20 chr11 104757047 104757194 -17086662 + B3 SINE B2 63 206 -10 5 1384 1827 181 92 29 chr11 104757278 104757703 -17086153 - RMER16 LTR ERVK 0 533 1 5 1384 281 59 0 0 chr11 104758047 104758098 -17085758 - Lx LINE L1 -1 6653 6603 5 1384 3144 68 5 0 chr11 104758098 104758496 -17085360 - MTB LTR MaLR 0 400 1 5 1384 4124 136 134 18 chr11 104758496 104759282 -17084574 - MTB-int LTR MaLR 0 1258 382 5 1384 1672 78 0 20 chr11 104759282 104759530 -17084326 - Lx2 LINE L1 -359 6638 6396 5 1384 531 270 78 7 chr11 104759580 104759733 -17084123 + B4 SINE B4 2 165 -127 5 1384 557 179 28 0 chr11 104760073 104760179 -17083677 - B1_Mus1 SINE Alu 0 148 40 5 1384 719 234 91 10 chr11 104762728 104762927 -17080929 - B3 SINE B2 -1 215 1 5 1384 560 239 27 53 chr11 104763553 104763703 -17080153 + MTEb LTR MaLR 1 146 -233 5 1384 1191 63 0 0 chr11 104764224 104764366 -17079490 - B1_Mus1 SINE Alu -5 143 2 5 1384 242 284 20 31 chr11 104764539 104764637 -17079219 + B2_Mm2 SINE B2 3 99 -96 5 1384 1678 26 0 0 chr11 104764851 104765043 -17078813 + B2_Mm1t SINE B2 2 193 0 5 1384 261 0 0 0 chr11 104765520 104765549 -17078307 + (TTGG)n Simple_repeat Simple_repeat 4 32 0 5 1384 322 296 147 21 chr11 104765553 104765743 -17078113 - L1MEf LINE L1 -5077 1123 910 5 1384 2377 68 0 0 chr11 104765833 104766143 -17077713 - MTB_Mm LTR MaLR -97 310 1 5 1384 31 26 0 0 chr11 104766447 104766485 -17077371 + AT_rich Low_complexity Low_complexity 1 38 0 5 1384 882 210 54 12 chr11 104766878 104767231 -17076625 - RLTR42-int LTR ERVK -3601 2536 1952 5 1384 5097 204 38 47 chr11 104767307 104768220 -17075636 - Lx6 LINE L1 -2 7458 6523 5 1384 2104 124 85 9 chr11 104768220 104768561 -17075295 - ORR1B2 LTR MaLR 0 367 1 5 1384 5097 204 38 47 chr11 104768561 104768825 -17075031 - Lx6 LINE L1 -938 6522 6291 5 1384 414 354 100 11 chr11 104768828 104769088 -17074768 - Cheshire DNA MER1_type -2137 283 1 5 1384 249 260 37 46 chr11 104769569 104769678 -17074178 - L1M2 LINE L1 -398 5899 5792 5 1384 22 70 0 0 chr11 104769765 104769808 -17074048 + AT_rich Low_complexity Low_complexity 1 43 0 5 1384 277 151 18 70 chr11 104770524 104770581 -17073275 + B1_Mur1 SINE Alu 90 143 -6 5 1384 239 200 0 91 chr11 104772076 104772119 -17071737 - B3 SINE B2 -15 201 164 5 1384 414 0 0 0 chr11 104772119 104772165 -17071691 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1384 239 200 0 91 chr11 104772165 104772187 -17071669 - B3 SINE B2 -53 163 142 5 1384 219 278 174 17 chr11 104772188 104772360 -17071496 - L2 LINE L2 -625 2794 2596 5 1384 400 310 56 56 chr11 104772360 104772555 -17071301 + L2a LINE L2 2769 2963 -456 5 1384 293 314 85 0 chr11 104772615 104772733 -17071123 + L2a LINE L2 3029 3156 -270 5 1384 288 0 0 0 chr11 104773184 104773216 -17070640 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1384 225 316 108 75 chr11 104773919 104774131 -17069725 - BGLII_B LTR ERVK -135 306 88 5 1384 572 73 12 0 chr11 104774150 104774232 -17069624 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 5 1384 851 56 0 0 chr11 104774468 104774576 -17069280 - ORR1A3 LTR MaLR -2 324 217 5 1384 4212 83 21 34 chr11 104774576 104775189 -17068667 - L1Md_F2 LINE L1 -1 6581 5977 5 1384 736 192 21 100 chr11 104775189 104775267 -17068589 - ORR1A3 LTR MaLR -111 283 202 5 1384 1307 126 38 95 chr11 104775267 104775530 -17068326 - ORR1A3 LTR MaLR -78 248 1 5 1384 456 333 57 0 chr11 104775744 104775885 -17067971 + MIR SINE MIR 4 152 -110 5 1384 914 289 43 10 chr11 104776906 104777298 -17066558 - L1M2 LINE L1 -2145 3998 3594 5 1384 284 213 26 9 chr11 104777275 104777370 -17066486 - L1M4 LINE L1 -2877 3269 3171 5 1384 995 49 126 99 chr11 104777643 104777825 -17066031 - B2_Mm2 SINE B2 -7 188 2 5 1384 23 0 0 0 chr11 104778104 104778127 -17065729 + AT_rich Low_complexity Low_complexity 1 23 0 5 1384 1029 241 10 5 chr11 104778481 104778677 -17065179 - B3 SINE B2 -12 204 8 5 1384 294 234 167 9 chr11 104778970 104778994 -17064862 - PB1 SINE Alu -1 126 2 5 1384 547 96 0 12 chr11 104778994 104779078 -17064778 - 4.5SRNA scRNA scRNA -11 83 1 5 1384 4980 46 0 0 chr11 104779078 104779712 -17064144 + L1Md_F2 LINE L1 4952 5585 -298 5 1384 7896 52 2 3 chr11 104779713 104780698 -17063158 + L1Md_F2 LINE L1 5587 6570 -12 5 1384 382 289 56 137 chr11 104780901 104781134 -17062722 + MER20 DNA MER1_type 4 217 -2 5 1384 304 273 13 0 chr11 104781299 104781376 -17062480 + MTEa LTR MaLR 288 365 -14 5 1384 607 268 109 4 chr11 104781776 104782005 -17061851 - L1MB4 LINE L1 -1 6179 5927 5 1384 24 0 0 0 chr11 104782027 104782051 -17061805 + AT_rich Low_complexity Low_complexity 1 24 0 5 1384 551 289 81 0 chr11 104782410 104782583 -17061273 + MIR SINE MIR 2 188 -74 5 1384 941 246 35 132 chr11 104782732 104782824 -17061032 + B4 SINE B4 5 95 -197 5 1384 597 171 277 6 chr11 104782824 104782983 -17060873 + B3 SINE B2 1 202 -14 5 1384 941 246 35 132 chr11 104782983 104783209 -17060647 + B4 SINE B4 96 292 0 5 1384 206 156 22 0 chr11 104783209 104783254 -17060602 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1384 3213 60 29 0 chr11 104784372 104784788 -17059068 - L1_Mus3 LINE L1 -6 6632 6205 5 1384 278 250 22 22 chr11 104786154 104786289 -17057567 + ORR1B1-int LTR MaLR 620 754 -755 5 1384 1074 51 7 0 chr11 104786190 104786327 -17057529 + B1_Mm SINE Alu 9 146 -1 5 1384 327 240 0 39 chr11 104786551 104786629 -17057227 + ID4_ SINE ID 2 76 -7 5 1384 1497 37 5 31 chr11 104787253 104787448 -17056408 - B2_Mm1t SINE B2 -2 191 2 5 1384 3016 69 13 3 chr11 104787458 104787848 -17056008 - L1_Mus1 LINE L1 0 6567 6174 5 1384 423 277 91 5 chr11 104789030 104789245 -17054611 + L1M4c LINE L1 2324 2574 -3805 5 1384 482 217 72 6 chr11 104789289 104789456 -17054400 + L1M4c LINE L1 3205 3382 -2997 5 1384 224 222 27 14 chr11 104790045 104790118 -17053738 + GA-rich Low_complexity Low_complexity 2 75 0 5 1384 640 266 82 21 chr11 104790498 104790828 -17053028 + L1M4c LINE L1 3368 3717 -2659 5 1384 287 270 14 0 chr11 104790909 104790983 -17052873 - RMER15 LTR ERVL -9 566 492 5 1384 329 221 112 12 chr11 104791000 104791157 -17052699 + L1M4c LINE L1 4761 4900 -1476 5 1384 22 56 0 0 chr11 104791359 104791395 -17052461 + AT_rich Low_complexity Low_complexity 1 36 0 5 1384 414 0 0 0 chr11 104791399 104791445 -17052411 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1384 222 37 0 0 chr11 104791626 104791653 -17052203 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1384 969 141 0 7 chr11 104791743 104791893 -17051963 - B1_Mur3 SINE Alu 0 149 1 5 1384 357 368 125 36 chr11 104792089 104792368 -17051488 - LTR16B2 LTR ERVL -2 460 157 5 1384 448 236 0 43 chr11 104792287 104792380 -17051476 + 5S rRNA rRNA 2 90 -31 5 1384 321 319 230 27 chr11 104792368 104792555 -17051301 - LTR16B2 LTR ERVL -176 286 62 5 1384 423 0 0 0 chr11 104793188 104793235 -17050621 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1384 639 282 7 0 chr11 104793340 104793482 -17050374 - RSINE1 SINE B4 -2 163 21 5 1384 23 54 0 0 chr11 104794030 104794067 -17049789 + AT_rich Low_complexity Low_complexity 1 37 0 5 1384 441 232 13 12 chr11 104794189 104794292 -17049564 - MTD LTR MaLR -14 405 285 5 1384 921 225 84 0 chr11 104795019 104795210 -17048646 - B3 SINE B2 -9 207 1 5 1384 344 209 0 11 chr11 104796208 104796295 -17047561 + GA-rich Low_complexity Low_complexity 2 87 0 5 1384 240 111 0 0 chr11 104796294 104796330 -17047526 + (GGGAGA)n Simple_repeat Simple_repeat 4 39 0 5 1384 373 325 40 7 chr11 104796649 104796801 -17047055 - RSINE1 SINE B4 -6 159 3 5 1384 1098 151 102 0 chr11 104797181 104797386 -17046470 - URR1A DNA MER1_type 0 226 1 5 1384 275 376 47 0 chr11 104797586 104797735 -17046121 - MLT2F LTR ERVL 0 663 508 5 1384 292 222 125 0 chr11 104798000 104798072 -17045784 + ID4_ SINE ID 3 83 0 5 1384 623 220 0 78 chr11 104798534 104798662 -17045194 + B1_Mur1 SINE Alu 19 136 -13 5 1384 396 0 0 0 chr11 104798663 104798707 -17045149 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1384 1766 348 37 29 chr11 104799086 104800354 -17043502 - RodERV21-int LTR ERV1 -788 4203 2926 5 1384 1960 238 93 28 chr11 104801610 104802528 -17041328 - RodERV21-int LTR ERV1 -2273 2718 1742 5 1384 1988 55 4 0 chr11 104802532 104802788 -17041068 - L1Md_F2 LINE L1 -385 6197 5941 5 1384 3680 261 49 44 chr11 104802791 104803064 -17040792 - RodERV21-int LTR ERV1 -3260 1731 1450 5 1384 426 69 0 0 chr11 104803064 104803122 -17040734 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1384 3680 261 49 44 chr11 104803122 104804041 -17039815 - RodERV21-int LTR ERV1 -3542 1449 534 5 1384 186 79 75 50 chr11 104804044 104804084 -17039772 - MIR SINE MIR -78 130 90 6 1384 722 294 58 38 chr11 104804105 104804398 -17039458 - RodERV21-int LTR ERV1 -4686 305 7 5 1384 1312 209 138 106 chr11 104804748 104805315 -17038541 - RMER4B LTR ERVK 0 585 1 6 1384 756 104 0 25 chr11 104805871 104805989 -17037867 - B1_Mur4 SINE Alu -1 149 35 6 1384 1146 235 93 56 chr11 104806001 104806427 -17037429 - RMER16 LTR ERVK 0 533 1 6 1384 536 281 89 6 chr11 104806804 104806972 -17036884 - B3A SINE B2 -16 182 1 6 1384 463 268 12 0 chr11 104807650 104807818 -17036038 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 1384 1689 118 22 25 chr11 104808889 104809167 -17034689 + RLTR15 LTR ERVK 80 356 -3 6 1384 294 253 13 0 chr11 104809173 104809252 -17034604 - MLT1A1 LTR MaLR -38 370 291 6 1384 319 285 90 27 chr11 104809328 104809584 -17034272 + B4 SINE B4 3 274 -18 6 1384 225 303 66 0 chr11 104809641 104809717 -17034139 - MLT1A1 LTR MaLR -327 81 1 6 1384 324 0 0 0 chr11 104809746 104809782 -17034074 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1384 814 246 95 18 chr11 104810144 104810471 -17033385 - L1MA8 LINE L1 -56 6235 5884 6 1384 357 261 72 20 chr11 104810476 104810655 -17033201 - L1M2 LINE L1 -1950 4190 4005 6 1384 402 271 119 0 chr11 104811914 104812032 -17031824 + B1F SINE Alu 10 141 -8 6 1384 574 265 29 14 chr11 104812110 104812248 -17031608 + RSINE1 SINE B4 4 143 -22 6 1384 402 115 0 0 chr11 104812253 104812314 -17031542 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1384 285 341 38 61 chr11 104813019 104813074 -17030782 - L1MB8 LINE L1 -9 6169 6123 6 1384 585 285 124 0 chr11 104813074 104813260 -17030596 + B3 SINE B2 1 209 -7 6 1384 513 312 188 35 chr11 104813260 104813724 -17030132 - L1MB8 LINE L1 -56 6122 5580 6 1384 687 208 101 64 chr11 104813821 104814149 -17029707 - RLTR15 LTR ERVK -19 340 1 6 1384 792 74 0 0 chr11 104814206 104814327 -17029529 + (GA)n Simple_repeat Simple_repeat 2 122 0 6 1384 511 296 93 128 chr11 104814389 104814922 -17028934 - RLTR12B LTR ERVK -8 519 1 6 1384 6381 238 44 52 chr11 104814922 104817150 -17026706 - MYSERV-int LTR ERVK 0 6550 4340 6 1384 279 246 151 21 chr11 104817150 104817321 -17026535 - RLTR9C LTR ERVK -34 403 153 6 1384 943 139 18 0 chr11 104817341 104817506 -17026350 - MYSERV-int LTR ERVK -5105 3854 3687 6 1384 957 291 70 34 chr11 104817656 104817715 -17026141 - L1MB8 LINE L1 -1198 4948 4895 6 1384 1343 89 0 30 chr11 104817715 104817912 -17025944 + B2_Mm2 SINE B2 3 193 -2 6 1384 957 291 70 34 chr11 104817912 104818410 -17025446 - L1MB8 LINE L1 -1252 4894 4371 6 1384 21 0 0 0 chr11 104818417 104818438 -17025418 + AT_rich Low_complexity Low_complexity 1 21 0 6 1384 261 339 0 0 chr11 104819511 104819576 -17024280 + ID4_ SINE ID 2 66 -17 6 1384 250 198 15 53 chr11 104819580 104819713 -17024143 + GA-rich Low_complexity Low_complexity 3 130 0 6 1384 518 0 16 0 chr11 104820143 104820205 -17023651 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1384 983 274 77 44 chr11 104820239 104820616 -17023240 - L1MA4 LINE L1 -405 5895 5507 6 1384 3510 118 62 44 chr11 104820616 104821292 -17022564 - RMER6C LTR ERVK -2 688 1 6 1384 983 273 105 43 chr11 104821292 104821482 -17022374 - L1MA4 LINE L1 -791 5506 5293 6 1384 294 278 155 12 chr11 104821503 104821761 -17022095 - L1MA4 LINE L1 -901 5242 4948 6 1384 635 253 40 14 chr11 104821905 104822053 -17021803 - RSINE1 SINE B4 -12 153 2 6 1384 603 252 0 0 chr11 104822586 104822693 -17021163 + PB1D10 SINE Alu 3 109 -8 6 1384 264 281 60 26 chr11 104823085 104823202 -17020654 + HERV16-int LTR ERVL 1042 1162 -3834 6 1384 586 220 262 0 chr11 104824160 104824328 -17019528 + B3 SINE B2 1 212 -4 6 1384 976 161 411 38 chr11 104824974 104825266 -17018590 - MTD LTR MaLR -13 406 6 6 1384 366 208 0 0 chr11 104825272 104825349 -17018507 - PB1D10 SINE Alu -27 90 14 6 1384 3342 66 7 7 chr11 104826035 104826464 -17017392 - L1_Mus2 LINE L1 -3 6563 6135 6 1384 1050 144 193 0 chr11 104827392 104827573 -17016283 - B3 SINE B2 0 216 1 6 1384 358 345 6 57 chr11 104828058 104828075 -17015781 + ID_B1 SINE B4 76 224 0 6 1384 484 343 7 0 chr11 104828075 104828215 -17015641 + B1F SINE Alu 9 149 0 6 1384 654 252 29 81 chr11 104828255 104828428 -17015428 + RSINE1 SINE B4 2 165 0 6 1384 339 25 0 0 chr11 104828439 104828479 -17015377 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1384 720 59 0 0 chr11 104828614 104828716 -17015140 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 1384 184 242 129 0 chr11 104828742 104828804 -17015052 - L2a LINE L2 -93 3333 3264 6 1384 198 0 0 0 chr11 104828869 104828891 -17014965 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1384 629 288 6 6 chr11 104829331 104829492 -17014364 + RSINE1 SINE B4 3 163 -2 6 1384 1439 41 4 37 chr11 104829493 104830002 -17013854 + (TAGA)n Simple_repeat Simple_repeat 1 491 0 6 1384 366 239 35 60 chr11 104830288 104830404 -17013452 + PB1D10 SINE Alu 5 117 0 6 1384 827 245 14 32 chr11 104830409 104830628 -17013228 + B3 SINE B2 2 216 0 6 1384 267 240 6 57 chr11 104830774 104830933 -17012923 + (TTA)n Simple_repeat Simple_repeat 1 151 0 6 1384 21 0 0 0 chr11 104831089 104831110 -17012746 + AT_rich Low_complexity Low_complexity 1 21 0 6 1384 189 0 0 0 chr11 104831468 104831489 -17012367 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1384 3101 128 28 2 chr11 104831557 104832065 -17011791 - RLTR28 LTR ERVL -3 521 1 6 1384 1032 152 19 19 chr11 104832482 104832606 -17011250 + Lx2A1 LINE L1 6781 6904 -104 6 1384 2388 125 137 28 chr11 104832606 104833074 -17010782 - MURVY-LTR LTR ERV1 0 519 1 6 1384 1032 152 19 19 chr11 104833074 104833164 -17010692 + Lx2A1 LINE L1 6905 6995 -13 6 1384 25 90 0 0 chr11 104833169 104833236 -17010620 + AT_rich Low_complexity Low_complexity 1 67 0 6 1384 1268 34 0 0 chr11 104833321 104833468 -17010388 - B1_Mus1 SINE Alu 0 148 2 6 1384 1026 39 0 0 chr11 104833729 104833857 -17009999 + B1_Mm SINE Alu 20 147 0 6 1384 504 192 78 52 chr11 104833880 104834034 -17009822 - Lx8 LINE L1 -236 7237 7080 6 1384 1438 305 94 19 chr11 104834400 104835476 -17008380 - L1M2 LINE L1 -852 5291 4135 6 1384 697 174 116 24 chr11 104835479 104835689 -17008167 - RLTR21 LTR ERVK -118 1454 1268 6 1384 1085 160 30 94 chr11 104835672 104835907 -17007949 - RLTR21 LTR ERVK -892 680 461 6 1384 272 105 0 0 chr11 104835907 104835945 -17007911 + B2_Mm2 SINE B2 2 39 -156 6 1384 709 76 0 0 chr11 104836010 104836102 -17007754 + B2_Mm2 SINE B2 46 137 -58 6 1384 1180 227 14 36 chr11 104836098 104836537 -17007319 - RLTR21 LTR ERVK -1097 475 1 6 1384 392 342 45 0 chr11 104836538 104836737 -17007119 - L1M2 LINE L1 -2011 4129 3922 6 1384 186 133 0 0 chr11 104836737 104836767 -17007089 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1384 281 286 0 23 chr11 104836786 104836872 -17006984 + C-rich Low_complexity Low_complexity 3 86 0 6 1384 225 24 23 45 chr11 104836897 104836941 -17006915 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 6 1384 438 20 0 0 chr11 104836983 104837034 -17006822 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1384 403 293 92 46 chr11 104837057 104837297 -17006559 - L1M2 LINE L1 -2307 3836 3586 6 1384 208 143 0 0 chr11 104837348 104837383 -17006473 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1384 957 34 0 16 chr11 104837384 104837505 -17006351 - B1_Mus1 SINE Alu -1 147 29 6 1384 396 344 69 30 chr11 104837505 104837736 -17006120 - L1M2 LINE L1 -2571 3572 3333 6 1384 25 0 0 0 chr11 104839085 104839110 -17004746 + AT_rich Low_complexity Low_complexity 1 25 0 6 1384 2391 124 18 98 chr11 104839151 104839588 -17004268 - RLTR9D LTR ERVK -1 402 1 6 1384 633 158 44 0 chr11 104840975 104841089 -17002767 - PB1D9 SINE Alu 0 120 2 6 1384 630 283 175 7 chr11 104841255 104841547 -17002309 + RCHARR1 DNA MER1_type 1 341 -633 6 1384 889 163 0 7 chr11 104841745 104841899 -17001957 + B2_Mm2 SINE B2 2 154 -41 6 1384 626 85 11 0 chr11 104841901 104841995 -17001861 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1384 346 269 62 0 chr11 104842062 104842192 -17001664 - L1M5 LINE L1 -3877 2269 2132 6 1384 235 341 145 89 chr11 104842434 104842930 -17000926 - MLT1G3 LTR MaLR -16 563 40 6 1384 380 254 170 28 chr11 104842948 104843157 -17000699 - L1M5 LINE L1 -457 5722 5480 6 1384 242 284 26 39 chr11 104843180 104843257 -17000599 - ID4 SINE ID -7 76 1 6 1384 21 0 0 0 chr11 104843412 104843433 -17000423 + AT_rich Low_complexity Low_complexity 1 21 0 6 1384 1282 122 102 5 chr11 104843581 104843787 -17000069 + URR1A DNA MER1_type 1 226 0 6 1384 569 83 12 0 chr11 104844548 104844632 -16999224 + (TCCC)n Simple_repeat Simple_repeat 3 87 0 6 1384 463 310 20 40 chr11 104844643 104844791 -16999065 - B1F SINE Alu -4 145 1 6 1384 240 100 0 0 chr11 104844942 104844982 -16998874 + (ATG)n Simple_repeat Simple_repeat 2 41 0 6 1384 862 244 105 7 chr11 104848760 104848802 -16995054 - MT2B LTR ERVL -2 599 549 6 1384 324 70 0 0 chr11 104848802 104848845 -16995011 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 1384 862 244 105 7 chr11 104848845 104849079 -16994777 - MT2B LTR ERVL -53 548 298 6 1384 372 111 0 0 chr11 104849076 104849130 -16994726 - MT2B LTR ERVL -547 54 1 6 1384 384 261 272 0 chr11 104849189 104849467 -16994389 + Lx8 LINE L1 7114 7468 -5 6 1384 414 0 0 0 chr11 104849657 104849703 -16994153 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1384 566 269 0 21 chr11 104849711 104849855 -16994001 + B4 SINE B4 148 288 -4 6 1384 189 394 34 70 chr11 104850086 104850384 -16993472 + L2 LINE L2 2565 2851 -568 6 1384 643 235 8 8 chr11 104850395 104850515 -16993341 + B3 SINE B2 70 189 -27 6 1384 1860 117 12 61 chr11 104850695 104851041 -16992815 + ORR1A4 LTR MaLR 1 329 0 6 1384 7206 124 26 110 chr11 104851041 104852523 -16991333 + ORR1A4-int LTR MaLR 1 1358 -605 6 1384 352 102 98 33 chr11 104852520 104852581 -16991275 - ORR1A3-int LTR MaLR -984 979 915 6 1384 278 312 25 12 chr11 104853046 104853127 -16990729 - RMER12 LTR ERVK -141 1181 1100 6 1384 3405 171 74 26 chr11 104853319 104853513 -16990343 - RLTR22_Mur LTR ERVK -866 982 762 6 1384 186 43 0 0 chr11 104853513 104853536 -16990320 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1384 3405 171 74 26 chr11 104853536 104854100 -16989756 - RLTR22_Mur LTR ERVK -1087 761 188 6 1384 823 58 0 0 chr11 104854100 104854203 -16989653 + L1_Mus2 LINE L1 6121 6223 -343 6 1384 6155 3 0 0 chr11 104854203 104854909 -16988947 - L1Md_A LINE L1 0 6582 5904 6 1384 2641 47 0 75 chr11 104854910 104855282 -16988574 + L1_Mus2 LINE L1 6222 6565 -1 6 1384 928 202 15 34 chr11 104855294 104855499 -16988357 - RLTR22_Mur LTR ERVK -1647 201 1 6 1384 329 276 20 20 chr11 104856733 104856833 -16987023 - ID_B1 SINE B4 -34 190 91 6 1384 294 299 114 47 chr11 104857203 104857352 -16986504 + MLT1A0 LTR MaLR 1 160 -248 6 1385 667 280 6 17 chr11 104857877 104858055 -16985801 + B4A SINE B4 109 284 -8 6 1385 289 240 192 0 chr11 104858141 104858266 -16985590 - L1M2 LINE L1 -1591 4552 4404 7 1385 714 290 65 0 chr11 104858271 104858457 -16985399 - B3A SINE B2 0 198 1 7 1385 757 304 156 17 chr11 104858470 104859132 -16984724 - L1M2 LINE L1 -1743 4400 3647 7 1385 34 0 0 0 chr11 104859307 104859341 -16984515 + AT_rich Low_complexity Low_complexity 1 34 0 7 1385 253 220 26 68 chr11 104859716 104859833 -16984023 - Lx8 LINE L1 -4 7469 7358 7 1385 21 0 0 0 chr11 104860032 104860053 -16983803 + AT_rich Low_complexity Low_complexity 1 21 0 7 1385 751 249 85 0 chr11 104860138 104860327 -16983529 + B3 SINE B2 1 205 -11 7 1385 22 35 0 0 chr11 104860662 104860691 -16983165 + AT_rich Low_complexity Low_complexity 1 29 0 7 1385 237 309 40 20 chr11 104861706 104861805 -16982051 - ID2 SINE ID -48 104 4 7 1385 727 200 26 13 chr11 104861868 104862020 -16981836 - ORR1D1 LTR MaLR -200 174 21 7 1385 598 245 14 34 chr11 104862425 104862573 -16981283 - B1_Mur2 SINE Alu -2 147 3 7 1385 701 169 7 0 chr11 104863434 104863570 -16980286 + (TA)n Simple_repeat Simple_repeat 2 138 0 7 1385 497 338 41 18 chr11 104863624 104863844 -16980012 - B4A SINE B4 0 292 68 7 1385 417 276 71 24 chr11 104864846 104864972 -16978884 - B1F SINE Alu 0 149 18 7 1385 245 309 31 21 chr11 104864977 104865073 -16978783 + B1F1 SINE Alu 1 97 -52 7 1385 204 40 0 0 chr11 104865084 104865109 -16978747 + (GGGAA)n Simple_repeat Simple_repeat 1 25 0 7 1385 798 222 85 5 chr11 104865129 104865328 -16978528 + B3 SINE B2 2 216 0 7 1385 249 291 35 11 chr11 104865583 104865670 -16978186 + PB1D10 SINE Alu 29 117 0 7 1385 574 302 121 0 chr11 104865703 104866027 -16977829 + Lx8 LINE L1 6970 7332 -141 7 1385 828 254 6 6 chr11 104866039 104866213 -16977643 + B3A SINE B2 1 174 -24 7 1385 261 209 0 56 chr11 104866248 104866319 -16977537 + Lx8 LINE L1 7405 7471 -2 7 1385 637 243 141 11 chr11 104866341 104866532 -16977324 + B3 SINE B2 1 216 0 7 1385 536 220 120 8 chr11 104868047 104868180 -16975676 - B1_Mur2 SINE Alu -1 148 1 7 1385 351 253 110 44 chr11 104868478 104868569 -16975287 + B1F1 SINE Alu 17 113 -36 7 1385 630 0 0 0 chr11 104868586 104868656 -16975200 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 1385 393 164 45 34 chr11 104869062 104869239 -16974617 + GA-rich Low_complexity Low_complexity 2 180 0 7 1385 923 272 51 23 chr11 104869728 104869984 -16973872 + B4 SINE B4 31 292 0 7 1385 336 24 0 0 chr11 104870506 104870547 -16973309 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 7 1385 326 303 0 13 chr11 104872158 104872235 -16971621 + RSINE1 SINE B4 88 163 -2 7 1385 809 149 6 116 chr11 104872247 104872436 -16971420 + ORR1D1 LTR MaLR 8 181 -203 7 1385 4299 36 0 2 chr11 104872436 104873156 -16970700 - L1Md_F2 LINE L1 -524 6058 5340 7 1385 3399 91 28 40 chr11 104873176 104873710 -16970146 + L1Md_F2 LINE L1 6065 6582 0 7 1385 1127 204 17 34 chr11 104873710 104873944 -16969912 + ORR1D1 LTR MaLR 145 374 0 7 1385 719 178 80 22 chr11 104874296 104874434 -16969422 - B1_Mus2 SINE Alu 0 147 2 7 1385 1098 282 94 9 chr11 104874496 104874836 -16969020 - MTE2b LTR MaLR -1 378 10 7 1385 339 272 8 50 chr11 104874846 104874966 -16968890 - L1MEg LINE L1 -4475 1609 1495 7 1385 384 293 0 20 chr11 104875030 104875131 -16968725 + PB1D10 SINE Alu 16 114 -3 7 1385 441 0 0 0 chr11 104875133 104875182 -16968674 + (CATA)n Simple_repeat Simple_repeat 4 52 0 7 1385 303 296 101 52 chr11 104875201 104875508 -16968348 - L1MEg LINE L1 -4690 1394 1073 7 1385 1029 214 14 34 chr11 104875845 104876053 -16967803 + B3 SINE B2 2 205 -11 7 1385 1379 82 16 0 chr11 104876909 104877093 -16966763 - B2_Mm2 SINE B2 -8 187 1 7 1385 567 200 0 94 chr11 104877093 104877220 -16966636 - RSINE1 SINE B4 -46 119 5 7 1385 1099 76 7 0 chr11 104877352 104877496 -16966360 + B1_Mus1 SINE Alu 1 145 -3 7 1385 436 224 149 0 chr11 104877732 104877839 -16966017 + B1F1 SINE Alu 6 128 -21 7 1385 379 269 121 9 chr11 104877837 104877953 -16965903 + B1F2 SINE Alu 11 139 -10 7 1385 319 216 13 39 chr11 104878716 104878793 -16965063 + RSINE1 SINE B4 4 78 -87 7 1385 353 316 0 8 chr11 104878967 104879085 -16964771 + (CA)n Simple_repeat Simple_repeat 2 118 0 7 1385 590 293 7 20 chr11 104880230 104880380 -16963476 + B3A SINE B2 1 148 -50 7 1385 552 258 47 26 chr11 104880863 104881054 -16962802 - L1M2 LINE L1 -707 5593 5399 7 1385 180 0 0 0 chr11 104881061 104881081 -16962775 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1385 910 152 14 0 chr11 104881331 104881476 -16962380 - B1_Mur3 SINE Alu 0 149 3 7 1385 213 146 20 40 chr11 104882146 104882196 -16961660 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 7 1385 646 232 58 31 chr11 104882491 104882682 -16961174 + Lx8 LINE L1 7154 7349 -124 7 1385 24 85 0 0 chr11 104883190 104883249 -16960607 + AT_rich Low_complexity Low_complexity 1 59 0 7 1385 560 191 8 98 chr11 104885193 104885315 -16958541 + PB1D9 SINE Alu 2 112 -8 7 1385 599 0 14 0 chr11 104885325 104885396 -16958460 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 7 1385 27 62 0 0 chr11 104885396 104885444 -16958412 + AT_rich Low_complexity Low_complexity 1 48 0 7 1385 552 30 0 0 chr11 104886009 104886075 -16957781 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1385 207 167 0 0 chr11 104886149 104886191 -16957665 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1385 593 199 7 0 chr11 104886190 104886326 -16957530 + GA-rich Low_complexity Low_complexity 1 137 0 7 1385 280 320 30 83 chr11 104886326 104886459 -16957397 - B4A SINE B4 -143 149 24 7 1385 368 143 29 0 chr11 104886457 104886527 -16957329 - RLTR22_Mus LTR ERVK -1246 562 491 7 1385 405 256 161 0 chr11 104888208 104888345 -16955511 - RSINE1 SINE B4 -4 161 3 7 1385 335 85 0 21 chr11 104888765 104888813 -16955043 - HAL1-3A_ME LINE L1 -836 2022 1976 7 1385 769 135 12 12 chr11 104888813 104888985 -16954871 + (TCTG)n Simple_repeat Simple_repeat 2 173 0 7 1385 208 222 0 0 chr11 104888990 104889044 -16954812 + (TCTCTG)n Simple_repeat Simple_repeat 3 56 0 7 1385 435 172 35 0 chr11 104889044 104889213 -16954643 + (TCTG)n Simple_repeat Simple_repeat 2 176 0 7 1385 528 16 0 0 chr11 104889214 104889275 -16954581 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1385 284 0 0 27 chr11 104889480 104889517 -16954339 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 7 1385 765 210 21 47 chr11 104889792 104889982 -16953874 + B3A SINE B2 1 185 -13 7 1385 204 40 0 0 chr11 104890164 104890189 -16953667 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1385 556 221 79 0 chr11 104893454 104893594 -16950262 + RSINE1 SINE B4 4 154 -11 7 1385 639 75 19 9 chr11 104893618 104893726 -16950130 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 7 1385 1600 32 0 0 chr11 104893840 104894026 -16949830 + B2_Mm1a SINE B2 2 187 -6 7 1385 28 48 0 0 chr11 104894026 104894068 -16949788 + AT_rich Low_complexity Low_complexity 1 42 0 7 1385 385 284 10 10 chr11 104895479 104895575 -16948281 - B3 SINE B2 -30 186 91 7 1385 212 322 128 11 chr11 104895594 104895688 -16948168 + L2a LINE L2 3317 3421 -5 7 1385 570 318 124 23 chr11 104895926 104896280 -16947576 - MLT1B LTR MaLR 0 390 1 7 1385 314 257 81 54 chr11 104896408 104896519 -16947337 + PB1D10 SINE Alu 2 115 -2 7 1385 874 123 188 1 chr11 104896522 104896682 -16947174 + RMER1B Other Other 476 657 -409 7 1385 413 169 81 41 chr11 104896683 104896806 -16947050 + RMER1B Other Other 935 1062 -4 7 1385 331 272 24 12 chr11 104896843 104896925 -16946931 + RSINE1 SINE B4 67 149 -16 7 1385 734 156 49 0 chr11 104897004 104897126 -16946730 - B1_Mur4 SINE Alu 0 150 23 7 1385 594 189 40 59 chr11 104897244 104897396 -16946460 - B1F SINE Alu 0 149 1 7 1385 599 242 136 5 chr11 104897684 104897738 -16946118 - B3 SINE B2 0 216 163 7 1385 396 0 0 0 chr11 104897738 104897782 -16946074 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1385 599 242 136 5 chr11 104897782 104897918 -16945938 - B3 SINE B2 -54 162 1 7 1385 22 0 0 0 chr11 104897928 104897950 -16945906 + AT_rich Low_complexity Low_complexity 1 22 0 7 1385 25 65 0 0 chr11 104898339 104898385 -16945471 + AT_rich Low_complexity Low_complexity 1 46 0 7 1385 229 382 0 0 chr11 104898598 104898674 -16945182 + ID4_ SINE ID 2 77 -6 7 1385 384 296 82 56 chr11 104898701 104898934 -16944922 - L1MA4 LINE L1 -385 5915 5677 7 1385 393 289 84 67 chr11 104899843 104900021 -16943835 + B3A SINE B2 3 183 -15 7 1385 1209 113 0 0 chr11 104900022 104900261 -16943595 + (CA)n Simple_repeat Simple_repeat 1 239 0 7 1385 27 49 0 0 chr11 104900297 104900338 -16943518 + AT_rich Low_complexity Low_complexity 1 41 0 7 1385 833 230 60 5 chr11 104900343 104900544 -16943312 + B3 SINE B2 1 212 -4 7 1385 283 269 77 14 chr11 104901013 104901156 -16942700 - L1M4 LINE L1 -2697 3449 3298 7 1385 566 261 46 0 chr11 104901628 104901758 -16942098 + ID_B1 SINE B4 79 214 -10 7 1385 22 35 0 0 chr11 104902418 104902447 -16941409 + AT_rich Low_complexity Low_complexity 1 29 0 7 1385 433 333 38 25 chr11 104903365 104903525 -16940331 + B4A SINE B4 1 162 -130 7 1385 469 114 133 22 chr11 104903870 104903960 -16939896 + RMER4A LTR ERVK 367 466 0 7 1385 1038 30 88 15 chr11 104904435 104904571 -16939285 - B1_Mus2 SINE Alu 0 147 2 7 1385 500 285 4 82 chr11 104905059 104905330 -16938526 + L1MA6 LINE L1 5762 6008 -181 7 1385 417 306 31 37 chr11 104905567 104905730 -16938126 + RSINE1 SINE B4 3 164 -1 7 1385 480 345 91 56 chr11 104906561 104906784 -16937072 - MIR SINE MIR 0 262 20 7 1385 497 256 26 0 chr11 104906784 104906901 -16936955 - PB1D7 SINE Alu 0 120 1 7 1385 480 345 91 56 chr11 104906901 104906929 -16936927 - MIR SINE MIR -243 19 2 7 1385 22 35 0 0 chr11 104907762 104907791 -16936065 + AT_rich Low_complexity Low_complexity 1 29 0 7 1385 28 0 0 0 chr11 104907915 104907943 -16935913 + AT_rich Low_complexity Low_complexity 1 28 0 8 1385 795 306 103 20 chr11 104907959 104908502 -16935354 + L1M2 LINE L1 2595 3182 -2961 8 1385 1174 269 35 9 chr11 104908558 104908990 -16934866 + L1M2 LINE L1 3537 3979 -2164 8 1385 31688 71 7 8 chr11 104909000 104913956 -16929900 + L1Md_F2 LINE L1 226 5586 -297 8 1385 7967 60 0 2 chr11 104913957 104914951 -16928905 + L1Md_F2 LINE L1 5588 6579 -3 8 1385 462 309 65 51 chr11 104914999 104915411 -16928445 + L1_Mur3 LINE L1 4027 4444 -1436 8 1385 557 210 10 0 chr11 104915420 104915520 -16928336 + ID_B1 SINE B4 104 204 -20 8 1385 254 324 0 0 chr11 104915522 104915590 -16928266 + G-rich Low_complexity Low_complexity 3 70 0 8 1385 594 272 16 35 chr11 104915806 104915982 -16927874 + B3A SINE B2 4 178 -38 8 1385 2939 50 15 0 chr11 104915983 104916383 -16927473 + MusHAL1 LINE L1 1033 1438 -1274 8 1385 6598 137 31 7 chr11 104916384 104917491 -16926365 + Lx2 LINE L1 5864 6996 -1 8 1385 516 205 35 26 chr11 104917717 104917832 -16926024 - PB1D10 SINE Alu -1 116 1 8 1385 22 35 0 0 chr11 104918298 104918327 -16925529 + AT_rich Low_complexity Low_complexity 1 29 0 8 1385 400 241 137 34 chr11 104918414 104918560 -16925296 - RSINE1 SINE B4 -2 163 3 8 1385 339 270 0 0 chr11 104918568 104918642 -16925214 + B1_Mur4 SINE Alu 32 105 -45 8 1385 251 71 24 0 chr11 104918952 104918994 -16924862 + (TTG)n Simple_repeat Simple_repeat 2 44 0 8 1385 235 271 43 0 chr11 104919197 104919267 -16924589 - ID4 SINE ID -2 81 9 8 1385 1351 90 21 0 chr11 104919473 104919662 -16924194 + B2_Mm1t SINE B2 1 193 0 8 1385 2379 127 90 5 chr11 104920023 104920411 -16923445 + MTC LTR MaLR 1 421 0 8 1385 479 232 64 6 chr11 104920615 104920771 -16923085 - L1MB8 LINE L1 -16 6162 5998 8 1385 508 121 22 0 chr11 104920895 104920986 -16922870 + (TA)n Simple_repeat Simple_repeat 1 93 0 8 1385 513 262 28 0 chr11 104921734 104921841 -16922015 + B1_Mur1 SINE Alu 33 142 -7 8 1385 517 223 70 21 chr11 104922079 104922221 -16921635 - B1F1 SINE Alu 0 149 1 8 1385 278 219 238 47 chr11 104922235 104922407 -16921449 - Charlie1 DNA MER1_type -159 2622 2418 8 1385 245 279 15 0 chr11 104922411 104922479 -16921377 - ID4_ SINE ID -13 70 2 8 1385 885 52 0 0 chr11 104922496 104922611 -16921245 + (TG)n Simple_repeat Simple_repeat 2 116 0 8 1385 874 289 80 17 chr11 104922631 104922980 -16920876 - Charlie1 DNA MER1_type -348 2433 2063 8 1385 864 200 105 61 chr11 104922982 104923259 -16920597 + B4 SINE B4 2 290 -2 8 1385 262 364 84 0 chr11 104923276 104923419 -16920437 - Charlie1 DNA MER1_type -1146 1635 1481 8 1385 573 317 39 95 chr11 104924282 104924620 -16919236 - MLT1A0 LTR MaLR -19 346 28 8 1385 749 182 6 0 chr11 104925066 104925157 -16918699 + polypurine Low_complexity Low_complexity 1 92 0 8 1385 998 85 0 38 chr11 104925157 104925341 -16918515 + (GAA)n Simple_repeat Simple_repeat 2 178 0 8 1385 749 182 6 0 chr11 104925341 104925414 -16918442 + polypurine Low_complexity Low_complexity 93 165 0 8 1385 475 191 42 11 chr11 104926162 104926257 -16917599 - B1F SINE Alu 0 149 52 8 1385 4694 142 77 57 chr11 104926264 104927137 -16916719 - RMER19B LTR ERVK -12 890 1 8 1385 223 316 53 0 chr11 104927137 104927193 -16916663 - B1F1 SINE Alu -90 59 1 8 1385 222 320 0 0 chr11 104927512 104927562 -16916294 + ID4 SINE ID 3 52 -31 8 1385 465 50 0 0 chr11 104927562 104927622 -16916234 + (GA)n Simple_repeat Simple_repeat 2 61 0 8 1385 2621 59 22 3 chr11 104927816 104928174 -16915682 - BGLII LTR ERVK -56 365 1 8 1385 557 248 124 0 chr11 104928376 104928537 -16915319 - B3A SINE B2 -17 181 1 8 1385 1480 132 38 213 chr11 104928778 104928902 -16914954 - ORR1A4 LTR MaLR -1 328 220 8 1385 1136 76 0 0 chr11 104928902 104929047 -16914809 - B1_Mm SINE Alu 0 147 3 8 1385 1480 132 38 213 chr11 104929047 104929317 -16914539 - ORR1A4 LTR MaLR -110 219 3 8 1385 412 237 33 12 chr11 104929460 104929555 -16914301 - B1F SINE Alu -19 108 5 8 1385 238 346 13 13 chr11 104929486 104929565 -16914291 - B4A SINE B4 -135 157 79 8 1385 12526 77 19 46 chr11 104929703 104931597 -16912259 - RLTR22_Mur LTR ERVK -5 1843 2 8 1385 24 67 0 0 chr11 104931961 104932006 -16911850 + AT_rich Low_complexity Low_complexity 1 45 0 8 1385 411 73 0 0 chr11 104932121 104932176 -16911680 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1385 675 267 81 48 chr11 104932510 104932781 -16911075 + B4 SINE B4 1 280 -12 8 1385 630 272 94 0 chr11 104933240 104933420 -16910436 + B3 SINE B2 2 198 -18 8 1385 433 269 9 9 chr11 104933677 104933782 -16910074 + PB1D10 SINE Alu 3 107 -10 8 1385 638 285 0 0 chr11 104933996 104934140 -16909716 - B1F SINE Alu -3 146 3 8 1385 384 22 0 0 chr11 104934142 104934187 -16909669 + (TTA)n Simple_repeat Simple_repeat 3 47 0 8 1385 548 195 47 13 chr11 104934298 104934446 -16909410 - RMER12 LTR ERVK -29 1293 1092 8 1385 611 205 126 14 chr11 104934506 104934599 -16909257 - Lx9 LINE L1 -42 7602 7501 8 1385 489 97 0 0 chr11 104934599 104934671 -16909185 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1385 611 205 126 14 chr11 104934671 104934800 -16909056 - Lx9 LINE L1 -144 7500 7355 8 1385 937 244 21 0 chr11 104934803 104935037 -16908819 + Lx9 LINE L1 7108 7346 -298 8 1385 255 20 0 39 chr11 104935064 104935115 -16908741 - L1_Mus4 LINE L1 0 6636 6588 8 1385 22 56 0 0 chr11 104935173 104935209 -16908647 + AT_rich Low_complexity Low_complexity 1 36 0 8 1385 310 280 108 28 chr11 104935211 104935424 -16908432 - L1M3 LINE L1 -1081 5059 4830 8 1385 22 70 0 0 chr11 104935489 104935532 -16908324 + AT_rich Low_complexity Low_complexity 1 43 0 8 1385 561 167 0 0 chr11 104935547 104935649 -16908207 + GA-rich Low_complexity Low_complexity 2 103 0 8 1385 1871 237 91 109 chr11 104935656 104936065 -16907791 - RMER12 LTR ERVK -535 787 400 8 1385 1123 69 7 0 chr11 104936065 104936210 -16907646 - B1_Mus2 SINE Alu 0 147 2 8 1385 1871 237 91 109 chr11 104936210 104936601 -16907255 - RMER12 LTR ERVK -923 399 1 8 1385 364 247 13 13 chr11 104936642 104936720 -16907136 + ID4_ SINE ID 6 83 0 8 1385 614 262 43 24 chr11 104936808 104937019 -16906837 + B3 SINE B2 2 216 0 8 1385 464 236 118 61 chr11 104937087 104937367 -16906489 + Lx9 LINE L1 7341 7636 -8 8 1385 848 274 161 16 chr11 104937922 104938364 -16905492 - Charlie4a DNA MER1_type -2 506 1 8 1385 738 242 57 6 chr11 104938476 104938634 -16905222 + B3A SINE B2 7 172 -26 8 1385 508 275 0 0 chr11 104938754 104938874 -16904982 + ID_B1 SINE B4 72 191 -33 8 1385 286 368 38 9 chr11 104938886 104939097 -16904759 + L2b LINE L2 1941 2157 -1262 8 1385 379 186 106 8 chr11 104939154 104939263 -16904593 - RMER12 LTR ERVK -31 1291 1124 8 1385 884 172 6 0 chr11 104939296 104939470 -16904386 + GA-rich Low_complexity Low_complexity 1 175 0 8 1385 352 253 203 40 chr11 104939473 104939675 -16904181 - RMER12 LTR ERVK -531 791 557 8 1385 1722 236 53 93 chr11 104939691 104940455 -16903401 - RMER12 LTR ERVK -1148 700 1 8 1385 411 368 78 0 chr11 104940458 104940689 -16903167 + L2b LINE L2 2178 2426 -993 8 1385 185 385 28 0 chr11 104941272 104941381 -16902475 + L2b LINE L2 3075 3186 -189 8 1385 189 0 0 0 chr11 104942056 104942077 -16901779 + (TATG)n Simple_repeat Simple_repeat 4 24 0 8 1385 598 196 6 16 chr11 104942100 104942282 -16901574 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 8 1385 602 271 15 0 chr11 104942345 104942478 -16901378 - ID_B1 SINE B4 -1 223 89 8 1385 417 255 39 0 chr11 104942944 104943046 -16900810 + U6 snRNA snRNA 2 107 0 8 1385 640 241 13 40 chr11 104943081 104943232 -16900624 + B1_Mus2 SINE Alu 1 147 0 8 1385 512 269 248 30 chr11 104943285 104943404 -16900452 + Lx8 LINE L1 5298 5438 -442 8 1385 258 32 0 0 chr11 104943404 104943435 -16900421 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 1385 644 259 212 63 chr11 104943435 104943709 -16900147 + Lx8 LINE L1 5427 5784 -96 8 1385 1202 56 0 0 chr11 104943709 104943853 -16900003 + B1_Mus1 SINE Alu 4 147 -1 8 1385 644 236 146 62 chr11 104943853 104943962 -16899894 + Lx8 LINE L1 5785 5940 -360 8 1385 381 95 0 0 chr11 104943962 104944025 -16899831 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1385 522 250 137 74 chr11 104944025 104944133 -16899723 + Lx8 LINE L1 5941 6062 -241 8 1385 431 218 158 0 chr11 104944350 104944451 -16899405 + PB1D10 SINE Alu 1 117 0 8 1385 23 0 0 0 chr11 104944689 104944712 -16899144 + AT_rich Low_complexity Low_complexity 1 23 0 8 1385 356 246 113 30 chr11 104944732 104944887 -16898969 + PB1 SINE Alu 3 146 -2 8 1385 2496 148 49 24 chr11 104945395 104945805 -16898051 - MTC LTR MaLR -1 420 1 8 1385 245 322 40 48 chr11 104945812 104945876 -16897980 - MER5A1 DNA MER1_type -42 124 62 8 1385 1494 56 10 30 chr11 104945876 104946077 -16897779 - L1_Mus1 LINE L1 0 6567 6371 8 1385 245 322 40 48 chr11 104946077 104946136 -16897720 - MER5A1 DNA MER1_type -105 61 2 8 1385 1329 65 11 27 chr11 104947003 104947191 -16896665 + B2_Mm1a SINE B2 1 185 -8 8 1385 229 387 0 0 chr11 104947195 104947270 -16896586 - L2c LINE L2 -39 3348 3274 8 1385 211 233 43 22 chr11 104947690 104947782 -16896074 + (CATATA)n Simple_repeat Simple_repeat 6 99 0 8 1385 774 192 19 64 chr11 104947791 104947947 -16895909 + RSINE1 SINE B4 15 163 -2 8 1385 910 197 39 5 chr11 104948483 104948687 -16895169 + B3 SINE B2 2 212 -4 8 1385 606 157 0 0 chr11 104949094 104949253 -16894603 + (TG)n Simple_repeat Simple_repeat 2 160 0 8 1385 354 221 15 0 chr11 104949429 104949497 -16894359 + RSINE1 SINE B4 2 70 -95 8 1385 2196 146 38 11 chr11 104949876 104950244 -16893612 - ORR1C1 LTR MaLR 0 378 1 8 1385 298 162 142 75 chr11 104950809 104950856 -16893000 + L1M4 LINE L1 5172 5225 -921 8 1385 459 141 0 21 chr11 104950856 104950950 -16892906 + L1Md_F2 LINE L1 6491 6582 0 8 1385 298 162 142 75 chr11 104950950 104951022 -16892834 + L1M4 LINE L1 5226 5299 -847 8 1385 380 254 0 0 chr11 104951025 104951096 -16892760 + ID4 SINE ID 4 74 -9 8 1385 489 304 17 23 chr11 104951136 104951311 -16892545 - RLTR26 LTR ERVK -301 341 168 8 1385 709 262 0 0 chr11 104951418 104951567 -16892289 + B3 SINE B2 59 207 -9 8 1385 959 39 16 0 chr11 104951566 104951693 -16892163 + B1_Mm SINE Alu 13 141 -6 8 1385 423 0 0 0 chr11 104951696 104951743 -16892113 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 8 1385 563 174 335 18 chr11 104951747 104951911 -16891945 + B3 SINE B2 1 216 0 8 1385 761 179 0 0 chr11 104952284 104952424 -16891432 - B1_Mur1 SINE Alu 0 149 10 8 1385 395 204 237 41 chr11 104952507 104952604 -16891252 - PB1D10 SINE Alu 0 117 2 8 1385 634 219 29 0 chr11 104952617 104952754 -16891102 + B3A SINE B2 42 182 -16 9 1385 29 28 0 0 chr11 104952762 104952798 -16891058 + AT_rich Low_complexity Low_complexity 1 36 0 9 1385 407 247 41 0 chr11 104953982 104954079 -16889777 - L1MA9 LINE L1 -46 6266 6166 9 1385 468 190 129 0 chr11 104954151 104954267 -16889589 - L1MA9 LINE L1 -313 5999 5869 9 1385 714 250 41 41 chr11 104954270 104954466 -16889390 - B3A SINE B2 0 198 3 9 1385 425 233 68 0 chr11 104954700 104954803 -16889053 + PB1D10 SINE Alu 8 117 0 9 1385 180 125 0 0 chr11 104954811 104954843 -16889013 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 9 1385 557 252 14 48 chr11 104955145 104955291 -16888565 - RSINE1 SINE B4 -18 147 7 9 1385 1139 159 43 14 chr11 104956297 104956507 -16887349 + B3 SINE B2 1 216 0 9 1385 551 256 7 21 chr11 104956604 104956744 -16887112 + ID_B1 SINE B4 80 217 -7 9 1385 542 274 20 20 chr11 104957298 104957447 -16886409 - B1F SINE Alu 0 149 1 9 1385 28 29 0 0 chr11 104957514 104957549 -16886307 + AT_rich Low_complexity Low_complexity 1 35 0 9 1385 828 147 0 0 chr11 104957561 104957690 -16886166 - B3 SINE B2 -86 130 2 9 1385 971 146 14 0 chr11 104957858 104958002 -16885854 + B1_Mus1 SINE Alu 1 146 -2 9 1385 409 273 9 9 chr11 104958134 104958245 -16885611 + B1F2 SINE Alu 3 113 -36 9 1385 255 321 80 35 chr11 104958151 104958264 -16885592 + B4 SINE B4 106 223 -69 9 1385 334 280 119 8 chr11 104958720 104958846 -16885010 + B4A SINE B4 5 144 -148 9 1385 238 330 10 10 chr11 104958866 104958970 -16884886 + B4A SINE B4 187 290 -2 9 1385 264 100 0 0 chr11 104958979 104959019 -16884837 + (GGA)n Simple_repeat Simple_repeat 1 40 0 9 1385 427 328 8 8 chr11 104959049 104959166 -16884690 + RSINE1 SINE B4 49 165 0 9 1385 810 184 0 0 chr11 104959174 104959353 -16884503 + (CA)n Simple_repeat Simple_repeat 1 179 0 9 1385 180 152 0 0 chr11 104959355 104959388 -16884468 + (CATA)n Simple_repeat Simple_repeat 4 36 0 9 1385 194 242 177 10 chr11 104959596 104959692 -16884164 + L2 LINE L2 1442 1553 -1866 9 1385 603 257 57 28 chr11 104959805 104960017 -16883839 - B4A SINE B4 -74 218 1 9 1385 1997 123 59 15 chr11 104960114 104960453 -16883403 - ORR1B1 LTR MaLR 0 394 41 9 1385 467 211 0 0 chr11 104960481 104960557 -16883299 + ID4 SINE ID 4 79 -4 9 1385 475 221 56 21 chr11 104960658 104960801 -16883055 - B1F SINE Alu -1 148 1 9 1385 449 302 21 7 chr11 104961037 104961177 -16882679 - B1F SINE Alu -7 142 1 9 1385 294 246 29 0 chr11 104961522 104961591 -16882265 + MER44D DNA MER2_type 7 77 -628 9 1385 419 197 0 0 chr11 104961651 104961717 -16882139 + B1_Mur3 SINE Alu 1 66 -83 9 1385 447 19 0 0 chr11 104961719 104961771 -16882085 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1385 445 231 67 0 chr11 104961771 104961905 -16881951 + MER44D DNA MER2_type 505 647 -58 9 1385 250 269 241 0 chr11 104961971 104962079 -16881777 - B1F SINE Alu -15 134 1 9 1385 301 307 19 19 chr11 104962531 104962634 -16881222 - ID_B1 SINE B4 -6 218 116 9 1385 469 161 0 22 chr11 104962881 104962970 -16880886 - B1_Mus2 SINE Alu -19 128 42 9 1385 180 0 0 0 chr11 104963424 104963444 -16880412 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 9 1385 664 196 48 19 chr11 104963951 104964138 -16879718 - B3 SINE B2 0 195 2 9 1385 1051 118 11 11 chr11 104964226 104964406 -16879450 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1385 456 19 0 0 chr11 104964406 104964459 -16879397 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 9 1385 21 0 0 0 chr11 104964739 104964760 -16879096 + AT_rich Low_complexity Low_complexity 1 21 0 9 1385 335 282 73 78 chr11 104964785 104965004 -16878852 - RMER12 LTR ERVK -4 1318 1101 9 1385 1594 36 0 40 chr11 104965014 104965214 -16878642 + B2_Mm1t SINE B2 2 193 0 9 1385 5632 110 41 9 chr11 104965490 104966350 -16877506 - RMER17D LTR ERVK -2 887 1 9 1385 4290 109 55 32 chr11 104966356 104967143 -16876713 - RLTR22_Mur LTR ERVK -1043 805 1 9 1385 1229 41 0 0 chr11 104967307 104967452 -16876404 + B1_Mus2 SINE Alu 1 145 -2 9 1385 34 24 0 0 chr11 104967535 104967576 -16876280 + AT_rich Low_complexity Low_complexity 1 41 0 9 1385 202 342 0 26 chr11 104968026 104968104 -16875752 + MIR SINE MIR 108 183 -79 9 1385 764 197 15 0 chr11 104968560 104968697 -16875159 + B1_Mur2 SINE Alu 3 141 -8 9 1385 354 98 0 0 chr11 104968697 104968748 -16875108 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 9 1385 550 292 69 8 chr11 104968757 104968969 -16874887 + L1M2 LINE L1 2350 2548 -4301 9 1385 490 254 35 76 chr11 104968970 104969115 -16874741 + RSINE1 SINE B4 27 165 0 9 1385 25 31 0 0 chr11 104969116 104969148 -16874708 + AT_rich Low_complexity Low_complexity 1 32 0 9 1385 198 0 0 0 chr11 104969169 104969191 -16874665 + (CTGGGG)n Simple_repeat Simple_repeat 4 25 0 9 1385 250 196 17 67 chr11 104969197 104969257 -16874599 + ID4_ SINE ID 25 81 -2 9 1385 227 262 66 0 chr11 104969305 104969366 -16874490 + ID4 SINE ID 3 67 -16 9 1385 451 294 8 0 chr11 104969411 104969530 -16874326 + PB1D7 SINE Alu 1 120 0 9 1385 286 374 17 6 chr11 104969692 104969867 -16873989 + GA-rich Low_complexity Low_complexity 1 177 0 9 1385 418 178 0 0 chr11 104970908 104970981 -16872875 - ID_B1 SINE B4 -7 217 145 9 1385 534 306 14 0 chr11 104971068 104971215 -16872641 + B1F SINE Alu 1 149 0 9 1385 567 196 68 55 chr11 104971620 104971766 -16872090 + B1F SINE Alu 1 148 -1 9 1385 814 186 21 0 chr11 104971785 104971930 -16871926 + B1_Mur4 SINE Alu 3 150 0 9 1385 369 254 25 42 chr11 104972616 104972735 -16871121 - PB1D10 SINE Alu 0 117 1 9 1385 214 182 0 0 chr11 104972760 104972804 -16871052 + T-rich Low_complexity Low_complexity 1 44 0 9 1385 1197 61 0 0 chr11 104972815 104972962 -16870894 - B1_Mus2 SINE Alu 0 147 1 9 1385 272 289 39 0 chr11 104973874 104974002 -16869854 + G-rich Low_complexity Low_complexity 5 137 0 9 1385 181 343 71 0 chr11 104974240 104974339 -16869517 + L2b LINE L2 2318 2423 -996 9 1385 313 235 0 14 chr11 104974688 104974757 -16869099 + ID4 SINE ID 2 69 -14 9 1385 211 197 103 29 chr11 104974806 104974874 -16868982 + B1F SINE Alu 32 104 -45 9 1385 208 244 91 112 chr11 104975097 104975240 -16868616 + L2b LINE L2 3042 3181 -194 9 1385 433 239 0 0 chr11 104975306 104975394 -16868462 + PB1D9 SINE Alu 24 111 -9 9 1385 770 195 16 0 chr11 104975427 104975555 -16868301 - B1_Mur2 SINE Alu -19 130 1 9 1385 7873 61 15 52 chr11 104975587 104976901 -16866955 - L1_Mus1 LINE L1 0 6567 5269 9 1385 6659 40 1 19 chr11 104976901 104977721 -16866135 + L1Md_F2 LINE L1 5778 6582 0 9 1385 5715 106 9 143 chr11 104977721 104978202 -16865654 - L1_Mus1 LINE L1 -615 5268 4917 9 1385 995 292 11 19 chr11 104979299 104979568 -16864288 - B4A SINE B4 -15 277 11 9 1385 552 65 0 0 chr11 104979826 104979903 -16863953 + (TC)n Simple_repeat Simple_repeat 2 78 0 9 1385 625 261 19 62 chr11 104979920 104980128 -16863728 - ID_B1 SINE B4 -14 210 12 9 1385 310 260 30 50 chr11 104980176 104980277 -16863579 - B1_Mus1 SINE Alu -23 125 27 9 1385 398 69 17 0 chr11 104980330 104980388 -16863468 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 9 1385 2317 186 89 29 chr11 104980397 104980914 -16862942 - Lx6 LINE L1 -12 7448 6899 9 1385 471 60 0 0 chr11 104980914 104980981 -16862875 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1385 637 215 25 0 chr11 104981054 104981175 -16862681 + RSINE1 SINE B4 2 125 -40 9 1385 29 28 0 0 chr11 104981215 104981251 -16862605 + AT_rich Low_complexity Low_complexity 1 36 0 9 1385 521 292 14 49 chr11 104981378 104981522 -16862334 + ID_B1 SINE B4 82 220 -4 9 1385 1197 68 0 0 chr11 104981569 104981715 -16862141 - B1_Mus1 SINE Alu -1 147 2 9 1385 188 300 42 14 chr11 104981864 104981935 -16861921 - L2a LINE L2 -3 3423 3351 9 1385 391 263 127 54 chr11 104982026 104982247 -16861609 - RMER15 LTR ERVL -22 553 317 9 1385 326 258 42 18 chr11 104982426 104982549 -16861307 - PB1 SINE Alu -5 122 1 9 1385 374 232 31 10 chr11 104982730 104982826 -16861030 + B1F1 SINE Alu 12 109 -40 9 1385 278 223 211 11 chr11 104982979 104983074 -16860782 + PB1D9 SINE Alu 1 114 -6 9 1385 874 129 40 145 chr11 104983141 104983341 -16860515 + B2_Mm2 SINE B2 2 180 -15 9 1385 1616 42 0 0 chr11 104983343 104983535 -16860321 + B2_Mm1a SINE B2 1 192 -1 9 1385 1577 216 78 74 chr11 104983555 104984226 -16859630 + RMER1B Other Other 144 695 -371 9 1385 227 276 50 93 chr11 104984702 104984842 -16859014 + RLTR41 LTR ERV1 251 384 -62 9 1385 949 187 104 0 chr11 104984892 104985074 -16858782 + RMER1B Other Other 691 891 -175 9 1385 549 152 75 17 chr11 104985096 104985216 -16858640 + RMER1B Other Other 940 1066 0 9 1385 653 193 116 7 chr11 104985692 104985838 -16858018 + B3A SINE B2 2 163 -35 9 1385 697 216 15 28 chr11 104985858 104986052 -16857804 + B3 SINE B2 6 192 -3 9 1385 225 249 44 49 chr11 104986189 104986283 -16857573 + B1F SINE Alu 10 100 -17 9 1385 334 93 267 0 chr11 104986294 104986380 -16857476 + Lx9 LINE L1 7536 7644 0 9 1385 633 253 0 20 chr11 104986383 104986532 -16857324 + B1_Mm SINE Alu 1 146 -1 9 1385 233 271 0 0 chr11 104986551 104986599 -16857257 + polypurine Low_complexity Low_complexity 2 49 0 9 1385 648 225 34 34 chr11 104986758 104986905 -16856951 + B1_Mur1 SINE Alu 1 147 -2 9 1385 237 108 0 0 chr11 104986905 104986942 -16856914 + (CAA)n Simple_repeat Simple_repeat 1 37 0 9 1385 845 247 33 6 chr11 104987002 104987185 -16856671 + B3 SINE B2 1 188 -28 9 1385 423 0 0 0 chr11 104987667 104987714 -16856142 + (CCCCG)n Simple_repeat Simple_repeat 2 48 0 9 1386 220 229 13 79 chr11 104988769 104988845 -16855011 + B2_Mm2 SINE B2 1 71 -124 9 1386 393 213 73 9 chr11 104988870 104988979 -16854877 + ID_B1 SINE B4 105 220 -4 1 1386 485 219 78 9 chr11 104989122 104989237 -16854619 + PB1 SINE Alu 1 123 -4 1 1386 243 0 0 0 chr11 104989609 104989636 -16854220 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1386 270 0 0 0 chr11 104990530 104990560 -16853296 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1386 274 222 95 0 chr11 104990683 104990746 -16853110 - ID4_ SINE ID -7 76 8 1 1386 212 231 104 30 chr11 104990687 104990754 -16853102 - B2_Mm2 SINE B2 -122 73 2 1 1386 712 225 137 26 chr11 104990924 104991361 -16852495 + RLTR18B LTR ERVK 1 510 -2 1 1386 297 308 51 0 chr11 104991590 104991668 -16852188 + PB1D10 SINE Alu 1 82 -35 1 1386 425 310 86 16 chr11 104992142 104992329 -16851527 - MER21B LTR ERV1 -132 731 532 1 1386 261 0 0 0 chr11 104993146 104993175 -16850681 + (CGTG)n Simple_repeat Simple_repeat 4 32 0 1 1386 377 237 19 102 chr11 104993208 104993316 -16850540 - B3A SINE B2 -99 99 1 1 1386 1348 87 33 0 chr11 104993351 104993535 -16850321 - B2_Mm1t SINE B2 -2 191 2 1 1386 318 253 153 31 chr11 104993535 104993633 -16850223 - ID_B1 SINE B4 -10 214 105 1 1386 769 152 58 0 chr11 104994326 104994464 -16849392 + B1_Mur4 SINE Alu 2 147 -3 1 1386 576 272 130 5 chr11 104994494 104994679 -16849177 + B3 SINE B2 5 212 -4 1 1386 460 262 93 7 chr11 104994714 104994864 -16848992 + RSINE1 SINE B4 3 165 0 1 1386 309 245 70 20 chr11 104995038 104995138 -16848718 + PB1 SINE Alu 22 126 -1 1 1386 593 272 24 69 chr11 104995842 104996177 -16847679 - RLTR15 LTR ERVK -39 320 1 1 1386 255 236 73 0 chr11 104996177 104996219 -16847637 - B1F2 SINE Alu -100 49 4 1 1386 797 254 43 10 chr11 104996766 104996973 -16846883 + B3 SINE B2 1 214 -2 1 1386 412 255 66 0 chr11 104996985 104997091 -16846765 + B1_Mur1 SINE Alu 2 114 -35 1 1386 1110 42 35 0 chr11 104997403 104997545 -16846311 - B1_Mus2 SINE Alu 0 147 1 1 1386 232 278 40 20 chr11 104998143 104998242 -16845614 - PB1D7 SINE Alu -11 109 9 1 1386 617 252 79 25 chr11 104998291 104998494 -16845362 + B3A SINE B2 2 215 -1 1 1386 2485 71 12 3 chr11 104998524 104998848 -16845008 - ORR1A2 LTR MaLR 0 327 1 1 1386 545 151 86 0 chr11 104998876 104998969 -16844887 - B1_Mur4 SINE Alu -43 107 7 1 1386 350 74 0 18 chr11 104999515 104999570 -16844286 + (TCC)n Simple_repeat Simple_repeat 2 55 0 1 1386 440 262 19 4 chr11 104999617 104999753 -16844103 - RLTR11B LTR ERVK -272 255 105 1 1386 1399 94 5 0 chr11 105000103 105000294 -16843562 + B2_Mm1t SINE B2 2 193 0 1 1386 245 303 32 53 chr11 105000371 105000465 -16843391 - PB1D10 SINE Alu -2 115 24 2 1386 324 103 0 0 chr11 105000496 105000554 -16843302 + (ATTG)n Simple_repeat Simple_repeat 2 59 0 3 1386 359 162 149 0 chr11 105000704 105000778 -16843078 + PB1D9 SINE Alu 36 120 0 4 1386 612 189 18 0 chr11 105001179 105001290 -16842566 + PB1D9 SINE Alu 1 113 -7 5 1386 444 223 117 0 chr11 105001378 105001481 -16842375 - RSINE1 SINE B4 -22 143 29 6 1386 257 311 0 0 chr11 105001530 105001591 -16842265 - ID_B1 SINE B4 -46 178 118 7 1386 754 138 9 0 chr11 105001595 105001711 -16842145 + B1_Mus2 SINE Alu 10 126 -21 8 1386 1266 34 0 0 chr11 105001833 105001979 -16841877 + B1_Mm SINE Alu 2 147 0 9 1386 233 194 29 88 chr11 105001994 105002062 -16841794 + PB1D10 SINE Alu 43 106 -11 1 1386 322 250 110 0 chr11 105002111 105002211 -16841645 + B1F SINE Alu 4 114 -35 1 1386 441 252 2 35 chr11 105002303 105002428 -16841428 + RSINE1 SINE B4 5 119 -173 1 1386 503 235 0 10 chr11 105002522 105002625 -16841231 + 7SK RNA RNA 1 102 -229 1 1386 1232 48 0 0 chr11 105002906 105003052 -16840804 + B1_Mus2 SINE Alu 1 146 -1 1 1386 595 221 54 16 chr11 105003921 105004050 -16839806 + B1_Mur1 SINE Alu 9 142 -7 1 1386 203 0 0 36 chr11 105004064 105004077 -16839779 + (TA)n Simple_repeat Simple_repeat 1 13 0 1 1386 1573 155 41 22 chr11 105004077 105004393 -16839463 - RLTRETN_Mm LTR ERVK 0 322 1 1 1386 203 0 0 36 chr11 105004393 105004407 -16839449 + (TA)n Simple_repeat Simple_repeat 1 14 0 1 1386 207 175 0 0 chr11 105004407 105004447 -16839409 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 1 1386 277 247 0 165 chr11 105004461 105004558 -16839298 + RSINE1 SINE B4 15 95 -70 2 1386 1201 102 6 0 chr11 105004591 105004758 -16839098 - B2_Mm2 SINE B2 -27 168 1 2 1386 217 316 0 17 chr11 105005122 105005180 -16838676 - ID4 SINE ID -24 59 3 2 1386 617 191 99 0 chr11 105005203 105005334 -16838522 + B1_Mur2 SINE Alu 1 144 -5 2 1386 833 150 29 22 chr11 105005348 105005484 -16838372 + B1_Mur4 SINE Alu 11 147 -3 2 1386 212 276 209 0 chr11 105005521 105005626 -16838230 + B1F SINE Alu 1 127 -22 2 1386 257 195 54 4 chr11 105005656 105005721 -16838135 + ID4 SINE ID 4 70 -82 2 1386 270 0 0 0 chr11 105005738 105005768 -16838088 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1386 850 167 14 0 chr11 105005768 105005906 -16837950 - B1_Mur4 SINE Alu -9 141 2 2 1386 275 305 40 56 chr11 105005910 105006035 -16837821 - MIRb SINE MIR -63 205 83 2 1386 268 188 0 0 chr11 105006074 105006122 -16837734 + B3 SINE B2 1 48 -168 3 1386 388 271 120 14 chr11 105006333 105006475 -16837381 + RSINE1 SINE B4 3 159 -6 3 1386 575 233 136 30 chr11 105006912 105007111 -16836745 - B4A SINE B4 -69 223 4 3 1386 403 281 11 0 chr11 105007153 105007242 -16836614 - PB1D10 SINE Alu -27 90 1 3 1386 248 264 10 121 chr11 105007160 105007259 -16836597 - MT2B LTR ERVL -360 241 154 3 1386 188 354 15 0 chr11 105007540 105007605 -16836251 + L2a LINE L2 3348 3413 -13 3 1386 228 315 40 14 chr11 105008272 105008346 -16835510 + ID4_ SINE ID 7 82 -1 3 1386 554 145 57 6 chr11 105008428 105008557 -16835299 - B1_Mur3 SINE Alu 0 149 10 3 1386 1484 78 0 5 chr11 105008852 105009046 -16834810 - B2_Mm2 SINE B2 -2 193 1 3 1386 500 241 65 51 chr11 105009141 105009355 -16834501 - RSINE1 SINE B4 -18 274 44 3 1386 817 90 16 43 chr11 105009409 105009594 -16834262 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 1386 449 260 60 0 chr11 105009614 105009714 -16834142 - B4A SINE B4 -185 107 2 3 1386 261 98 0 0 chr11 105009716 105009757 -16834099 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 4 1386 1276 34 0 0 chr11 105009758 105009906 -16833950 - B1_Mus1 SINE Alu 0 148 1 4 1386 520 252 42 78 chr11 105009908 105009934 -16833922 - B1F SINE Alu 0 149 124 4 1386 1239 133 0 20 chr11 105009934 105010133 -16833723 + B2_Mm2 SINE B2 1 195 0 4 1386 520 252 42 78 chr11 105010133 105010248 -16833608 - B1F SINE Alu -26 123 13 4 1386 1315 67 84 6 chr11 105010248 105010409 -16833447 + B2_Mm1t SINE B2 1 160 -33 4 1386 459 0 0 0 chr11 105010409 105010460 -16833396 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 4 1386 1315 67 84 6 chr11 105010460 105010477 -16833379 + B2_Mm1t SINE B2 161 191 -2 4 1386 4186 120 25 104 chr11 105010704 105011453 -16832403 - RMER6A LTR ERVK -4 752 59 4 1386 185 0 0 39 chr11 105011453 105011479 -16832377 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1386 4186 120 25 104 chr11 105011479 105011546 -16832310 - RMER6A LTR ERVK -698 58 2 4 1386 474 209 89 146 chr11 105011597 105011810 -16832046 + ID_B1 SINE B4 21 221 -3 4 1386 486 0 0 0 chr11 105011811 105011865 -16831991 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1386 286 254 28 62 chr11 105013406 105013456 -16830400 + ORR1B1-int LTR MaLR 590 728 -781 5 1386 357 252 17 51 chr11 105013456 105013573 -16830283 + MT2B LTR ERVL 145 257 -344 5 1386 726 133 35 0 chr11 105013485 105013598 -16830258 + B1_Mus2 SINE Alu 11 127 -20 5 1386 258 132 0 0 chr11 105013598 105013651 -16830205 + (G)n Simple_repeat Simple_repeat 1 53 0 5 1386 239 276 17 17 chr11 105013675 105013734 -16830122 + ID4_ SINE ID 4 62 -21 5 1386 251 275 20 71 chr11 105014191 105014289 -16829567 + B4 SINE B4 65 157 -135 5 1386 275 260 13 25 chr11 105014225 105014304 -16829552 + PB1D9 SINE Alu 9 86 -34 5 1386 422 36 18 0 chr11 105014316 105014372 -16829484 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1386 263 256 103 0 chr11 105014429 105014507 -16829349 + ID_B1 SINE B4 118 203 -21 5 1386 298 297 100 15 chr11 105014854 105015058 -16828798 - MIRb SINE MIR -31 237 16 6 1386 239 303 29 39 chr11 105016054 105016157 -16827699 + U1 snRNA snRNA 7 108 -57 6 1386 279 0 0 0 chr11 105016379 105016410 -16827446 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1386 336 263 81 0 chr11 105016468 105016567 -16827289 + ID_B1 SINE B4 118 224 0 6 1386 446 278 19 0 chr11 105016813 105016921 -16826935 + PB1D10 SINE Alu 1 110 -7 6 1386 930 166 189 22 chr11 105016939 105017124 -16826732 + B3 SINE B2 1 216 0 6 1386 353 267 4 182 chr11 105017691 105017813 -16826043 + ID SINE ID 1 78 -146 6 1386 785 134 16 8 chr11 105017813 105017941 -16825915 + B1_Mur4 SINE Alu 2 130 -20 6 1386 2384 194 45 19 chr11 105017942 105018440 -16825416 - RMER19C LTR ERVK 0 611 11 6 1386 1457 223 117 49 chr11 105018462 105018900 -16824956 + RMER19C LTR ERVK 115 593 -18 6 1386 1096 76 0 0 chr11 105018901 105019046 -16824810 + B2_Mm2 SINE B2 2 146 -49 7 1386 745 151 54 54 chr11 105019048 105019176 -16824680 + B1_Mus1 SINE Alu 1 135 -13 7 1386 252 0 0 0 chr11 105019176 105019204 -16824652 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1386 745 151 54 54 chr11 105019204 105019222 -16824634 + B1_Mus1 SINE Alu 136 147 -1 7 1386 213 228 18 0 chr11 105019390 105019447 -16824409 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1386 3468 149 85 3 chr11 105019501 105020087 -16823769 - RLTR33 LTR ERVK -44 634 1 7 1386 1108 193 51 0 chr11 105020550 105020747 -16823109 - B3 SINE B2 -5 211 5 7 1386 297 306 82 28 chr11 105021012 105021154 -16822702 + ID_B1 SINE B4 13 162 -62 7 1386 233 283 111 0 chr11 105021087 105021186 -16822670 + PB1D10 SINE Alu 8 117 0 7 1386 926 137 0 21 chr11 105021207 105021349 -16822507 + B1_Mur3 SINE Alu 11 149 0 7 1386 784 186 78 104 chr11 105021437 105021640 -16822216 + RMER10B LTR ERVL 3 203 -195 7 1386 621 72 0 0 chr11 105021640 105021723 -16822133 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 8 1386 1238 85 0 6 chr11 105021728 105021906 -16821950 + (TTC)n Simple_repeat Simple_repeat 3 179 0 8 1386 784 186 78 104 chr11 105021906 105021966 -16821890 + RMER10B LTR ERVL 204 265 -133 7 1386 204 40 0 0 chr11 105021966 105021991 -16821865 + (TTCTC)n Simple_repeat Simple_repeat 3 27 0 8 1386 965 206 5 77 chr11 105021991 105022212 -16821644 + RMER10B LTR ERVL 194 398 0 8 1386 378 0 0 0 chr11 105022324 105022366 -16821490 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8 1386 1264 53 0 29 chr11 105022366 105022529 -16821327 - B2_Mm1a SINE B2 -33 160 1 8 1386 764 157 21 14 chr11 105022956 105023098 -16820758 + B1_Mus2 SINE Alu 5 147 0 8 1386 511 240 0 0 chr11 105023215 105023311 -16820545 - B1_Mus1 SINE Alu -51 97 2 8 1386 1022 96 75 13 chr11 105023384 105023543 -16820313 - B2_Mm2 SINE B2 -26 169 1 8 1386 1517 59 5 0 chr11 105023553 105023740 -16820116 - B2_Mm1a SINE B2 -5 188 1 8 1386 803 277 19 62 chr11 105024122 105024445 -16819411 - RLTR31_Mur LTR ERVK -134 419 111 9 1386 1402 171 60 0 chr11 105024448 105024699 -16819157 - RLTR22_Mus LTR ERVK 0 1808 1543 9 1386 4780 103 14 159 chr11 105024932 105025905 -16817951 - RLTR22_Mur LTR ERVK -1016 832 1 9 1386 425 246 8 0 chr11 105025905 105026018 -16817838 - RLTR31_Mur LTR ERVK -432 121 8 9 1386 1050 78 35 0 chr11 105028424 105028566 -16815290 - B1_Mus1 SINE Alu -1 147 1 9 1386 953 154 67 17 chr11 105028568 105028746 -16815110 - B2_Mm2 SINE B2 -8 187 1 9 1386 623 97 44 22 chr11 105029320 105029457 -16814399 + CT-rich Low_complexity Low_complexity 2 141 0 9 1386 892 194 9 88 chr11 105029469 105029684 -16814172 + RMER10B LTR ERVL 194 391 -7 9 1386 1183 48 0 7 chr11 105029815 105029961 -16813895 - B1_Mm SINE Alu 0 147 3 9 1386 713 169 34 27 chr11 105030389 105030535 -16813321 + B1_Mus1 SINE Alu 2 148 0 9 1386 1296 34 0 0 chr11 105030660 105030808 -16813048 - B1_Mus1 SINE Alu 0 148 1 9 1386 644 141 65 16 chr11 105030980 105030994 -16812862 - B1_Mur1 SINE Alu 0 149 137 1 1386 216 0 0 0 chr11 105030994 105031018 -16812838 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1386 644 141 65 16 chr11 105031018 105031126 -16812730 - B1_Mur1 SINE Alu -13 136 21 1 1386 300 236 94 0 chr11 105031261 105031342 -16812514 + PB1 SINE Alu 21 100 -27 1 1386 278 279 45 23 chr11 105031355 105031443 -16812413 - Cheshire DNA MER1_type -2330 90 1 1 1386 301 258 0 0 chr11 105031600 105031666 -16812190 + ID4 SINE ID 4 69 -14 1 1386 233 194 42 56 chr11 105031805 105031876 -16811980 + L1M3d LINE L1 443 512 -5379 1 1386 1436 55 17 0 chr11 105031895 105032076 -16811780 + B2_Mm2 SINE B2 7 190 -5 1 1386 217 75 0 27 chr11 105032083 105032127 -16811729 + B2_Mm2 SINE B2 7 46 -152 1 1386 444 224 28 18 chr11 105032169 105032278 -16811578 - PB1D10 SINE Alu -7 110 1 1 1386 298 28 0 0 chr11 105032419 105032455 -16811401 + U2 snRNA snRNA 1 36 -152 1 1386 224 227 27 96 chr11 105032744 105032817 -16811039 + BC1_Mm scRNA scRNA 1 68 -84 1 1386 1393 99 16 0 chr11 105033004 105033196 -16810660 + B2_Mm2 SINE B2 1 195 0 1 1386 1354 95 16 5 chr11 105034083 105034274 -16809582 + B2_Mm2 SINE B2 2 194 -1 1 1386 2818 124 24 21 chr11 105034327 105034790 -16809066 + RMER6A LTR ERVK 1 464 -292 1 1386 1580 133 50 25 chr11 105034790 105035067 -16808789 + ORR1A2 LTR MaLR 1 284 -43 1 1386 821 99 8 62 chr11 105035067 105035196 -16808660 + B1_Mus1 SINE Alu 2 123 -25 1 1386 10349 123 86 31 chr11 105035194 105036607 -16807249 + ORR1A2-int LTR MaLR 16 1555 -408 1 1386 1598 27 32 0 chr11 105036607 105036793 -16807063 + B2_Mm1a SINE B2 2 193 0 1 1386 10349 123 86 31 chr11 105036793 105037226 -16806630 + ORR1A2-int LTR MaLR 1556 1963 0 1 1386 1826 117 91 58 chr11 105037226 105037535 -16806321 + ORR1A2 LTR MaLR 1 319 -8 1 1386 1431 143 17 0 chr11 105037537 105037774 -16806082 + RMER6A LTR ERVK 516 756 0 1 1386 288 268 138 6 chr11 105037774 105037912 -16805944 - MIRb SINE MIR -62 206 49 1 1386 432 213 72 27 chr11 105038014 105038125 -16805731 - PB1D7 SINE Alu -1 119 4 1 1386 586 252 63 0 chr11 105038182 105038309 -16805547 - RSINE1 SINE B4 -7 158 24 1 1386 362 194 244 143 chr11 105038320 105038421 -16805435 - B2_Mm1t SINE B2 -6 187 52 1 1386 1158 116 34 11 chr11 105038421 105038596 -16805260 - B2_Mm1t SINE B2 -14 179 1 1 1386 362 194 244 143 chr11 105038596 105038662 -16805194 - B2_Mm1t SINE B2 -142 51 3 1 1386 386 293 34 25 chr11 105038747 105038866 -16804990 + PB1D7 SINE Alu 1 120 0 1 1386 246 231 149 50 chr11 105038994 105039135 -16804721 - MER103 DNA DNA 0 166 12 1 1386 1098 36 66 0 chr11 105039180 105039317 -16804539 - B1_Mm SINE Alu 0 147 2 1 1386 557 197 117 8 chr11 105039671 105039799 -16804057 - B1_Mus2 SINE Alu -5 142 1 1 1386 701 123 0 9 chr11 105040352 105040459 -16803397 + PB1D9 SINE Alu 2 107 -13 1 1386 250 330 36 9 chr11 105040544 105040654 -16803202 + PB1D10 SINE Alu 4 116 -1 1 1386 439 244 365 13 chr11 105040667 105040829 -16803027 + ID_B1 SINE B4 4 222 -2 1 1386 374 248 59 10 chr11 105041043 105041145 -16802711 + B1F SINE Alu 2 108 -41 1 1386 219 215 209 30 chr11 105041218 105041285 -16802571 - B3 SINE B2 -137 79 1 1 1386 216 0 0 0 chr11 105042241 105042265 -16801591 + (GCGTG)n Simple_repeat Simple_repeat 5 28 0 1 1386 45 0 0 0 chr11 105043085 105043130 -16800726 + GC_rich Low_complexity Low_complexity 1 45 0 1 1386 27 29 0 0 chr11 105043208 105043242 -16800614 + GC_rich Low_complexity Low_complexity 1 34 0 1 1386 1695 26 0 10 chr11 105044925 105045120 -16798736 - B2_Mm1a SINE B2 0 193 1 1 1386 331 275 70 44 chr11 105045151 105045265 -16798591 - ID_B1 SINE B4 -1 223 107 1 1386 359 288 35 50 chr11 105045167 105045289 -16798567 - B1F2 SINE Alu -27 122 6 1 1386 713 200 82 21 chr11 105046104 105046298 -16797558 - B3 SINE B2 -7 209 4 1 1386 1265 41 0 0 chr11 105046735 105046882 -16796974 - B1_Mm SINE Alu 0 147 1 1 1386 327 308 103 28 chr11 105046993 105047100 -16796756 - PB1D10 SINE Alu 0 117 3 1 1386 267 291 127 0 chr11 105047319 105047398 -16796458 - PB1 SINE Alu -36 91 3 1 1386 263 303 39 13 chr11 105047409 105047423 -16796433 - ID_B1 SINE B4 -130 94 16 1 1386 354 238 16 0 chr11 105047423 105047486 -16796370 - ID2 SINE ID -4 79 16 1 1386 259 247 0 8 chr11 105047557 105047610 -16796246 - PB1D9 SINE Alu -97 51 2 1 1386 1447 60 11 0 chr11 105047632 105047816 -16796040 - B2_Mm1t SINE B2 -6 187 2 1 1386 400 278 102 0 chr11 105047825 105047933 -16795923 - B1F SINE Alu -2 147 29 1 1386 467 225 125 9 chr11 105047994 105048106 -16795750 - B1F SINE Alu -7 142 18 1 1386 808 120 52 8 chr11 105048198 105048332 -16795524 - B1_Mur4 SINE Alu -1 149 10 1 1386 447 237 68 88 chr11 105048199 105048347 -16795509 - B4 SINE B4 -69 223 79 1 1386 436 202 11 45 chr11 105048496 105048584 -16795272 + PB1D10 SINE Alu 27 111 -6 1 1386 204 40 0 0 chr11 105048809 105048834 -16795022 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1386 774 187 0 7 chr11 105048834 105048974 -16794882 - B1_Mur4 SINE Alu -11 139 1 1 1386 297 0 0 0 chr11 105048995 105049028 -16794828 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 1386 1104 102 0 25 chr11 105049029 105049190 -16794666 - B2_Mm2 SINE B2 -37 158 2 1 1386 724 169 66 7 chr11 105050070 105050207 -16793649 - B1_Mus2 SINE Alu -1 146 2 1 1386 805 198 116 16 chr11 105050248 105050438 -16793418 - B3 SINE B2 -6 210 2 1 1386 621 193 32 140 chr11 105050463 105050567 -16793289 - B1_Mur2 SINE Alu -9 140 49 1 1386 1581 42 0 10 chr11 105050567 105050759 -16793097 - B2_Mm2 SINE B2 -4 191 2 1 1386 621 193 32 140 chr11 105050759 105050811 -16793045 - B1_Mur2 SINE Alu -101 48 1 1 1386 24 0 0 0 chr11 105051018 105051042 -16792814 + AT_rich Low_complexity Low_complexity 1 24 0 1 1386 660 284 0 0 chr11 105051070 105051204 -16792652 - RSINE1 SINE B4 -30 135 2 1 1386 396 0 0 0 chr11 105051227 105051271 -16792585 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1386 3211 60 0 28 chr11 105051288 105051714 -16792142 - L1Md_F2 LINE L1 -4 6578 6165 1 1386 252 0 0 0 chr11 105052091 105052119 -16791737 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1386 369 195 33 33 chr11 105052145 105052235 -16791621 + Tigger13a DNA MER2_type 461 550 -221 1 1386 435 302 103 52 chr11 105052313 105052526 -16791330 + ID_B1 SINE B4 1 224 0 1 1386 288 231 62 25 chr11 105052570 105052650 -16791206 - MTEa LTR MaLR -4 375 293 1 1386 300 314 28 47 chr11 105052925 105053032 -16790824 - MLT1A1 LTR MaLR -277 131 27 1 1386 352 194 10 20 chr11 105053096 105053196 -16790660 - Lx2B LINE L1 0 7000 6902 1 1386 900 187 63 15 chr11 105053208 105053414 -16790442 - B3 SINE B2 0 216 1 1 1386 816 176 0 33 chr11 105053417 105053570 -16790286 - B1_Mur4 SINE Alu -2 148 1 1 1386 268 277 122 8 chr11 105053809 105053940 -16789916 - L1MEe LINE L1 -4142 712 567 1 1386 283 294 98 33 chr11 105054008 105054191 -16789665 - B2_Mm2 SINE B2 0 195 1 1 1386 1084 174 31 18 chr11 105054301 105054523 -16789333 - URR1B DNA MER1_type 0 225 1 1 1386 313 178 192 0 chr11 105054680 105054753 -16789103 - MERVL_2A-int LTR ERVL -5566 195 109 1 1386 469 306 32 16 chr11 105054791 105054917 -16788939 - B1_Mur1 SINE Alu -21 128 1 1 1386 293 263 83 92 chr11 105055059 105055168 -16788688 - Tigger7 DNA MER2_type 0 2491 2384 1 1386 873 220 104 74 chr11 105055191 105055490 -16788366 - Tigger7 DNA MER2_type -1924 567 260 1 1386 571 284 30 0 chr11 105055543 105055677 -16788179 - Tigger7 DNA MER2_type -2353 138 1 1 1386 521 237 0 10 chr11 105056257 105056355 -16787501 - PB1D9 SINE Alu -13 107 11 1 1386 512 317 106 32 chr11 105056709 105056898 -16786958 + B3 SINE B2 2 204 -12 1 1386 980 40 0 24 chr11 105056911 105057038 -16786818 - B1_Mus1 SINE Alu 0 148 25 1 1386 709 305 63 47 chr11 105057084 105057217 -16786639 - RMER15-int LTR ERVL -4360 639 508 1 1386 1040 121 189 0 chr11 105057217 105057407 -16786449 - URR1A DNA MER1_type 0 226 1 1 1386 709 305 63 47 chr11 105057407 105057572 -16786284 - RMER15-int LTR ERVL -4492 507 336 1 1386 891 219 75 25 chr11 105057753 105057954 -16785902 + B3 SINE B2 1 211 -5 1 1386 705 212 204 11 chr11 105057988 105058169 -16785687 + ID_B1 SINE B4 1 216 -8 1 1386 476 234 46 9 chr11 105058174 105058282 -16785574 + PB1D10 SINE Alu 5 116 -1 1 1386 1375 94 16 0 chr11 105058314 105058506 -16785350 + B2_Mm2 SINE B2 1 195 0 1 1386 277 294 174 0 chr11 105058610 105058702 -16785154 - PB1D10 SINE Alu -8 109 2 1 1386 376 205 36 12 chr11 105058791 105058875 -16784981 + PB1D9 SINE Alu 35 120 0 1 1386 641 224 9 86 chr11 105059133 105059343 -16784513 - B3A SINE B2 0 198 5 1 1386 385 250 26 44 chr11 105059418 105059531 -16784325 + B1_Mur4 SINE Alu 22 132 -18 1 1386 243 0 0 0 chr11 105059531 105059558 -16784298 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1386 286 263 66 26 chr11 105059580 105059668 -16784188 + PB1D10 SINE Alu 14 106 -14 1 1386 243 152 0 0 chr11 105059668 105059714 -16784142 + (TAG)n Simple_repeat Simple_repeat 2 47 0 1 1386 587 264 32 58 chr11 105059807 105059996 -16783860 + B3A SINE B2 4 187 -11 1 1386 30 27 0 0 chr11 105060000 105060037 -16783819 + AT_rich Low_complexity Low_complexity 1 37 0 1 1386 1258 182 131 0 chr11 105060054 105060188 -16783668 - MTD LTR MaLR 0 419 267 1 1386 1025 84 157 0 chr11 105060188 105060354 -16783502 + B2_Mm2 SINE B2 2 193 -2 1 1386 1258 197 127 10 chr11 105060354 105060510 -16783346 - MTD LTR MaLR -153 266 90 1 1386 255 61 0 0 chr11 105060660 105060693 -16783163 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1386 1033 72 50 0 chr11 105060693 105060832 -16783024 - B1_Mm SINE Alu 0 147 2 1 1386 591 291 76 38 chr11 105060911 105061175 -16782681 - MLT1B LTR MaLR -3 387 114 1 1386 376 333 25 0 chr11 105061219 105061339 -16782517 + RSINE1 SINE B4 12 134 -31 1 1386 410 96 0 14 chr11 105061341 105061415 -16782441 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1386 31 26 0 0 chr11 105061466 105061504 -16782352 + AT_rich Low_complexity Low_complexity 1 38 0 2 1386 392 185 329 7 chr11 105061631 105061783 -16782073 + B3 SINE B2 1 201 -15 2 1386 306 333 97 53 chr11 105062021 105062268 -16781588 - L1MD2 LINE L1 -175 6184 5927 2 1386 192 77 0 0 chr11 105062333 105062359 -16781497 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1386 1177 48 0 0 chr11 105062359 105062504 -16781352 - B1_Mus1 SINE Alu 0 148 4 2 1386 875 180 42 42 chr11 105062584 105062775 -16781081 - B2_Mm2 SINE B2 -3 192 2 2 1386 217 317 0 73 chr11 105062926 105062994 -16780862 - ID4_ SINE ID -2 81 19 2 1386 896 230 10 25 chr11 105063027 105063223 -16780633 - B3A SINE B2 -5 193 1 2 1386 352 291 105 14 chr11 105063280 105063423 -16780433 - RSINE1 SINE B4 -6 159 4 2 1386 276 30 0 0 chr11 105063660 105063693 -16780163 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1386 405 311 56 9 chr11 105063695 105063802 -16780054 - RSINE1 SINE B4 -51 114 3 2 1386 910 186 107 15 chr11 105063825 105064022 -16779834 - B3 SINE B2 0 216 2 2 1386 221 289 0 0 chr11 105064272 105064324 -16779532 + L2c LINE L2 3277 3328 -59 2 1386 1023 206 136 60 chr11 105064550 105064902 -16778954 - ORR1C2 LTR MaLR -2 382 4 2 1386 990 26 0 0 chr11 105064924 105065041 -16778815 + (TCTCCC)n Simple_repeat Simple_repeat 2 118 0 2 1386 303 358 89 8 chr11 105065046 105065170 -16778686 - B1F SINE Alu -15 134 1 2 1386 224 267 44 0 chr11 105065277 105065322 -16778534 + ID4 SINE ID 4 50 -33 2 1386 377 298 62 39 chr11 105065331 105065638 -16778218 - L1M4 LINE L1 -1185 4961 4648 2 1386 356 235 91 10 chr11 105065825 105065924 -16777932 - RSINE1 SINE B4 -57 108 2 2 1386 688 275 104 41 chr11 105065989 105066048 -16777808 - L1M4 LINE L1 -1582 4564 4512 2 1386 339 25 0 0 chr11 105066048 105066088 -16777768 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1386 333 173 53 80 chr11 105066098 105066211 -16777645 - PB1D9 SINE Alu -8 112 3 2 1386 688 275 104 41 chr11 105066211 105066249 -16777607 - L1M4 LINE L1 -1642 4504 4473 2 1386 1166 87 99 0 chr11 105066249 105066421 -16777435 - B2_Mm1t SINE B2 -3 190 2 2 1386 688 275 104 41 chr11 105066421 105066774 -16777082 - L1M4 LINE L1 -1674 4472 4074 2 1386 418 201 254 52 chr11 105066857 105067030 -16776826 - B3 SINE B2 -8 208 1 2 1386 1513 68 0 10 chr11 105067140 105067334 -16776522 + B2_Mm1t SINE B2 2 193 0 2 1386 557 295 49 21 chr11 105067369 105067511 -16776345 - ID_B1 SINE B4 -75 149 4 2 1386 558 219 81 0 chr11 105067609 105067732 -16776124 - ID_B1 SINE B4 -1 223 91 2 1386 220 173 57 19 chr11 105067777 105067830 -16776026 - B1_Mur1 SINE Alu -5 144 90 2 1386 541 218 27 18 chr11 105068208 105068320 -16775536 + B1_Mur2 SINE Alu 36 148 -1 2 1386 1263 86 32 11 chr11 105069210 105069399 -16774457 - B2_Mm2 SINE B2 0 195 3 2 1386 1311 97 37 5 chr11 105069505 105069692 -16774164 - B2_Mm2 SINE B2 0 195 3 2 1386 339 252 61 0 chr11 105069783 105069882 -16773974 - PB1D10 SINE Alu -6 111 7 2 1386 23 33 0 0 chr11 105069939 105069969 -16773887 + AT_rich Low_complexity Low_complexity 1 30 0 2 1386 300 233 13 52 chr11 105072634 105072711 -16771145 + ID4_ SINE ID 3 76 -7 2 1386 300 357 82 53 chr11 105072814 105073095 -16770761 + L2a LINE L2 2948 3236 -190 2 1386 484 305 95 55 chr11 105073163 105073416 -16770440 - B4 SINE B4 -27 265 3 2 1386 271 263 34 0 chr11 105073680 105073798 -16770058 - L1ME3A LINE L1 -253 5920 5799 2 1386 735 255 87 56 chr11 105073842 105074037 -16769819 - B4 SINE B4 0 292 92 2 1386 566 326 23 0 chr11 105074058 105074190 -16769666 - RSINE1 SINE B4 0 165 31 2 1386 405 189 147 0 chr11 105074259 105074354 -16769502 - PB1D9 SINE Alu -11 109 1 2 1386 681 239 79 12 chr11 105074354 105074438 -16769418 - B4 SINE B4 -195 97 3 2 1386 272 338 0 51 chr11 105074806 105074884 -16768972 - ID2 SINE ID -9 74 1 2 1386 809 167 22 0 chr11 105075367 105075505 -16768351 + B1_Mur4 SINE Alu 10 150 0 2 1386 225 284 100 9 chr11 105075552 105075662 -16768194 - L1MEd LINE L1 -3563 2583 2464 2 1386 835 242 44 29 chr11 105075674 105075878 -16767978 - B3 SINE B2 0 216 10 2 1386 687 250 17 122 chr11 105076082 105076319 -16767537 - ID_B1 SINE B4 -10 214 3 2 1386 796 263 92 5 chr11 105076774 105076969 -16766887 - B3 SINE B2 -3 213 2 2 1386 240 203 29 0 chr11 105077047 105077116 -16766740 - L1MEd LINE L1 -5266 870 800 2 1386 1596 47 0 0 chr11 105077324 105077514 -16766342 - B2_Mm1t SINE B2 -2 191 2 2 1386 372 316 0 0 chr11 105078341 105078439 -16765417 + PB1D10 SINE Alu 1 98 -19 2 1386 409 227 371 7 chr11 105078441 105078592 -16765264 + B3 SINE B2 2 207 -9 2 1386 239 284 27 13 chr11 105078706 105078781 -16765075 + B1F SINE Alu 74 149 0 2 1386 659 179 19 73 chr11 105078796 105078951 -16764905 + B1_Mm SINE Alu 1 135 -12 2 1386 599 197 17 16 chr11 105079190 105079319 -16764537 - B1_Mur4 SINE Alu -1 119 3 2 1386 529 257 0 62 chr11 105079409 105079554 -16764302 + B1_Mur4 SINE Alu 1 136 -14 2 1386 504 151 61 50 chr11 105079919 105080100 -16763756 - RMER17C LTR ERVK -133 277 95 2 1386 212 0 36 0 chr11 105080230 105080258 -16763598 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 2 1386 775 182 20 34 chr11 105080258 105080397 -16763459 - B1_Mur4 SINE Alu -12 138 1 2 1386 289 256 91 23 chr11 105080617 105080705 -16763151 - PB1D7 SINE Alu -9 111 18 2 1386 576 152 223 0 chr11 105080784 105080896 -16762960 - B1_Mus1 SINE Alu -9 139 3 2 1386 551 192 9 9 chr11 105081100 105081205 -16762651 - B1_Mur3 SINE Alu -2 147 43 2 1386 225 213 0 138 chr11 105081132 105081219 -16762637 - MT2B LTR ERVL -336 265 191 2 1386 417 39 0 0 chr11 105081570 105081621 -16762235 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 2 1386 1285 38 0 6 chr11 105081622 105081780 -16762076 - B2_Mm2 SINE B2 -37 158 2 2 1386 25 51 0 0 chr11 105082739 105082778 -16761078 + AT_rich Low_complexity Low_complexity 1 39 0 2 1386 672 267 28 11 chr11 105082807 105082985 -16760871 - B3A SINE B2 -16 182 2 2 1386 1188 99 21 32 chr11 105083364 105083551 -16760305 - B2_Mm2 SINE B2 -9 186 2 2 1386 613 232 19 78 chr11 105083564 105083770 -16760086 - B3A SINE B2 -4 194 1 2 1386 682 275 13 80 chr11 105083801 105084026 -16759830 + ID_B1 SINE B4 3 212 -12 2 1386 607 238 30 8 chr11 105084168 105084299 -16759557 - B1F SINE Alu -5 144 11 2 1386 310 351 122 22 chr11 105084417 105084647 -16759209 - L1ME3 LINE L1 -120 6042 5790 2 1386 6903 37 3 1 chr11 105084727 105085593 -16758263 - L1Md_F2 LINE L1 -8 6574 5707 2 1386 14721 51 1 4 chr11 105085589 105087532 -16756324 + L1Md_F2 LINE L1 3786 5723 -160 2 1386 363 281 52 160 chr11 105087539 105087719 -16756137 - B3 SINE B2 -19 197 32 2 1386 1416 78 11 0 chr11 105087719 105087910 -16755946 - B2_Mm1t SINE B2 0 193 1 2 1386 363 281 52 160 chr11 105087910 105087941 -16755915 - B3 SINE B2 -185 31 9 2 1386 795 128 43 36 chr11 105088365 105088503 -16755353 - B1_Mus2 SINE Alu 0 147 9 2 1386 297 320 9 99 chr11 105088632 105088743 -16755113 - B4 SINE B4 -89 203 103 2 1386 933 79 8 0 chr11 105088752 105088879 -16754977 + B1_Mur4 SINE Alu 2 129 -21 2 1386 413 245 20 69 chr11 105088879 105088980 -16754876 - B4A SINE B4 -194 98 3 2 1386 1160 57 139 0 chr11 105089328 105089486 -16754370 + B2_Mm2 SINE B2 2 181 -14 2 1386 804 164 0 82 chr11 105089713 105089872 -16753984 - B1_Mus2 SINE Alu -1 146 1 2 1386 830 282 14 5 chr11 105089912 105090122 -16753734 + B3 SINE B2 2 213 -3 2 1386 863 219 112 0 chr11 105090320 105090507 -16753349 - B3 SINE B2 0 216 9 2 1386 1077 79 0 7 chr11 105090533 105090666 -16753190 + B1_Mus2 SINE Alu 4 136 -11 2 1386 334 0 21 21 chr11 105090666 105090713 -16753143 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1386 482 362 121 27 chr11 105090835 105091457 -16752399 + L2 LINE L2 2177 2856 -563 2 1386 286 319 49 25 chr11 105091578 105091700 -16752156 + YREP_Mm Unknown Unknown 167 291 -1521 2 1386 608 275 22 7 chr11 105091592 105091731 -16752125 - ID_B1 SINE B4 -8 216 76 2 1386 414 0 0 0 chr11 105092200 105092246 -16751610 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1386 180 0 0 0 chr11 105092246 105092265 -16751591 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1386 654 195 85 8 chr11 105092309 105092438 -16751418 - B1_Mur3 SINE Alu -10 139 1 2 1386 238 188 62 0 chr11 105092440 105092488 -16751368 - BC1_Mm scRNA scRNA -100 52 2 2 1386 213 39 0 0 chr11 105092750 105092776 -16751080 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 2 1386 607 202 129 0 chr11 105092801 105092925 -16750931 - B1_Mus2 SINE Alu -7 140 1 2 1386 1120 172 44 10 chr11 105092932 105093137 -16750719 - B3 SINE B2 -2 214 3 2 1386 966 62 18 136 chr11 105093166 105093214 -16750642 + B2_Mm2 SINE B2 2 47 -148 2 1386 1339 28 108 0 chr11 105093214 105093390 -16750466 - B2_Mm2 SINE B2 0 195 1 2 1386 966 62 18 136 chr11 105093390 105093510 -16750346 + B2_Mm2 SINE B2 48 150 -45 2 1386 384 255 285 80 chr11 105093862 105094102 -16749754 - B4A SINE B4 0 292 3 2 1386 1177 68 0 0 chr11 105094117 105094263 -16749593 - B1_Mus2 SINE Alu 0 147 2 2 1386 300 330 50 74 chr11 105094360 105094481 -16749375 - B4A SINE B4 -169 123 6 2 1386 22 35 0 0 chr11 105094508 105094537 -16749319 + AT_rich Low_complexity Low_complexity 1 29 0 2 1386 719 148 286 36 chr11 105094604 105094772 -16749084 + B3 SINE B2 1 210 -6 2 1386 272 250 55 14 chr11 105095862 105095935 -16747921 + ID4_ SINE ID 1 76 -7 2 1386 359 284 81 18 chr11 105096044 105096155 -16747701 - ID_B1 SINE B4 -26 198 81 2 1386 1388 70 21 0 chr11 105096162 105096349 -16747507 - B2_Mm2 SINE B2 -3 192 2 3 1386 532 271 13 40 chr11 105096494 105096644 -16747212 - B4A SINE B4 -4 288 143 3 1386 349 242 169 68 chr11 105096708 105096885 -16746971 - B3A SINE B2 0 198 4 3 1386 548 167 29 0 chr11 105096901 105097003 -16746853 - B1_Mus2 SINE Alu 0 147 43 3 1386 274 264 84 97 chr11 105096944 105097099 -16746757 - RLTR25A LTR ERVK -521 582 430 3 1386 223 298 70 0 chr11 105097112 105097169 -16746687 - B1F1 SINE Alu -57 92 32 3 1386 283 268 28 0 chr11 105097244 105097315 -16746541 - ID SINE ID -150 74 2 2 1386 508 260 78 30 chr11 105097389 105097619 -16746237 - L1M4 LINE L1 -403 5775 5535 3 1386 468 0 0 0 chr11 105097783 105097835 -16746021 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1386 460 263 34 0 chr11 105097849 105097967 -16745889 - RSINE1 SINE B4 -42 123 2 3 1386 998 285 63 15 chr11 105098160 105098556 -16745300 - L1M4 LINE L1 -960 5186 4772 3 1386 516 322 7 32 chr11 105098662 105098816 -16745040 - ID_B1 SINE B4 -2 222 73 3 1386 647 172 139 0 chr11 105098907 105099029 -16744827 - B1_Mur4 SINE Alu -7 143 5 3 1386 276 314 104 126 chr11 105099038 105099260 -16744596 - ID_B1 SINE B4 -2 222 6 3 1386 302 264 41 14 chr11 105099319 105099392 -16744464 - PB1D10 SINE Alu -33 84 10 3 1386 213 382 67 0 chr11 105099553 105099642 -16744214 + ID_B1 SINE B4 81 175 -49 3 1386 290 341 12 12 chr11 105099566 105099652 -16744204 + PB1D10 SINE Alu 19 104 -13 3 1386 189 107 0 0 chr11 105099682 105099710 -16744146 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1386 633 233 29 22 chr11 105099781 105099917 -16743939 + B3A SINE B2 7 143 -55 3 1386 276 271 28 28 chr11 105100198 105100270 -16743586 - B4A SINE B4 -6 286 215 3 1386 205 49 98 0 chr11 105100279 105100320 -16743536 + (TTTTTA)n Simple_repeat Simple_repeat 3 47 0 3 1386 906 160 0 7 chr11 105100321 105100466 -16743390 - B1_Mur4 SINE Alu -6 144 1 3 1386 254 292 41 14 chr11 105100493 105100566 -16743290 + ID4_ SINE ID 2 76 -7 3 1386 912 257 55 72 chr11 105100622 105100915 -16742941 + B4A SINE B4 5 292 0 3 1386 747 246 42 10 chr11 105101098 105101298 -16742558 - B3A SINE B2 -4 212 11 3 1386 267 341 0 33 chr11 105102192 105102283 -16741573 + ID_B1 SINE B4 79 166 -58 3 1386 375 245 21 36 chr11 105102202 105102300 -16741556 + PB1D10 SINE Alu 8 114 -35 3 1386 483 262 13 40 chr11 105103249 105103400 -16740456 - B1_Mur2 SINE Alu -2 147 1 3 1386 679 266 58 13 chr11 105103456 105103612 -16740244 - B3A SINE B2 -35 163 1 3 1386 441 326 0 0 chr11 105103700 105103798 -16740058 - PB1D10 SINE Alu -14 103 6 3 1386 633 226 153 21 chr11 105103899 105104089 -16739767 - B3 SINE B2 0 216 2 3 1386 235 108 0 0 chr11 105104093 105104130 -16739726 - ID_B1 SINE B4 0 224 188 3 1386 239 328 153 44 chr11 105104162 105104299 -16739557 - RSINE1 SINE B4 -2 163 12 3 1386 233 229 21 0 chr11 105104529 105104577 -16739279 + MLT1A0 LTR MaLR 233 281 -84 3 1386 298 99 419 38 chr11 105104816 105104921 -16738935 - B2_Mm2 SINE B2 -4 191 47 3 1386 1030 147 29 0 chr11 105104990 105105160 -16738696 - B2_Mm1t SINE B2 -17 176 2 3 1386 243 0 0 0 chr11 105105459 105105486 -16738370 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1386 217 296 0 0 chr11 105105502 105105546 -16738310 - B1_Mus2 SINE Alu -102 45 2 3 1386 432 0 0 0 chr11 105105692 105105740 -16738116 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1386 545 302 37 25 chr11 105105826 105105989 -16737867 - B4A SINE B4 -127 165 1 3 1386 926 292 110 16 chr11 105106412 105106729 -16737127 - MTD LTR MaLR -8 411 65 3 1386 22 0 0 0 chr11 105106730 105106752 -16737104 + AT_rich Low_complexity Low_complexity 1 22 0 3 1386 287 304 54 68 chr11 105107131 105107148 -16736708 + ID_B1 SINE B4 79 224 0 3 1386 491 222 84 38 chr11 105107148 105107279 -16736577 + B1_Mur2 SINE Alu 13 149 0 3 1386 871 228 42 5 chr11 105107292 105107482 -16736374 + B3 SINE B2 5 201 -15 3 1386 786 111 129 53 chr11 105108252 105108423 -16735433 - B2_Mm2 SINE B2 -9 186 3 3 1386 224 277 0 0 chr11 105108625 105108672 -16735184 + polypyrimidine Low_complexity Low_complexity 4 50 0 3 1386 662 158 62 48 chr11 105109010 105109156 -16734700 + B1_Mur1 SINE Alu 2 149 0 3 1386 261 0 0 0 chr11 105109167 105109196 -16734660 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 3 1386 369 233 0 0 chr11 105109315 105109388 -16734468 - ID2 SINE ID -1 82 10 3 1386 297 0 0 0 chr11 105109657 105109690 -16734166 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 3 1386 244 81 0 0 chr11 105109690 105109716 -16734140 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 1386 1191 68 0 0 chr11 105109716 105109862 -16733994 - B1_Mus2 SINE Alu -1 146 1 3 1386 244 81 0 0 chr11 105109862 105109872 -16733984 + (TTTG)n Simple_repeat Simple_repeat 3 12 0 3 1386 726 103 182 0 chr11 105110188 105110314 -16733542 + B1_Mur3 SINE Alu 1 149 0 3 1386 3741 57 6 4 chr11 105111118 105111592 -16732264 + L1_Mus1 LINE L1 6093 6567 0 3 1386 1059 233 10 0 chr11 105111872 105112078 -16731778 + B3 SINE B2 2 209 -7 3 1386 769 185 29 7 chr11 105112136 105112272 -16731584 + B1_Mur4 SINE Alu 3 141 -9 3 1386 978 171 12 124 chr11 105112407 105112494 -16731362 + URR1A DNA MER1_type 3 81 -145 3 1386 1143 82 0 7 chr11 105112494 105112642 -16731214 + B1_Mus1 SINE Alu 2 148 0 3 1386 978 171 12 124 chr11 105112642 105112795 -16731061 + URR1A DNA MER1_type 82 216 -10 3 1386 181 349 67 60 chr11 105113179 105113313 -16730543 - L2c LINE L2 -22 3365 3231 3 1386 641 106 0 9 chr11 105113817 105113922 -16729934 + (TCC)n Simple_repeat Simple_repeat 3 106 0 3 1386 436 84 11 108 chr11 105114694 105114787 -16729069 - L1Md_F2 LINE L1 0 6582 6499 3 1386 375 307 20 0 chr11 105115250 105115351 -16728505 - PB1D10 SINE Alu -2 115 13 3 1386 216 250 0 0 chr11 105115407 105115451 -16728405 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1386 333 260 0 14 chr11 105115527 105115601 -16728255 - ID4 SINE ID -10 73 1 3 1386 207 156 0 0 chr11 105115636 105115668 -16728188 + CT-rich Low_complexity Low_complexity 4 35 0 3 1386 462 286 64 0 chr11 105115699 105115839 -16728017 + B3A SINE B2 16 164 -34 3 1386 291 93 0 0 chr11 105115840 105115883 -16727973 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1386 303 28 0 0 chr11 105115962 105115998 -16727858 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1386 256 259 34 34 chr11 105117285 105117373 -16726483 - PB1D10 SINE Alu -18 99 12 3 1386 273 260 131 30 chr11 105117547 105117646 -16726210 + PB1D10 SINE Alu 5 113 -4 3 1386 712 242 0 0 chr11 105117652 105117784 -16726072 + B1_Mur1 SINE Alu 1 132 -17 3 1386 446 256 99 0 chr11 105118421 105118542 -16725314 - B1F SINE Alu -13 136 4 3 1386 22 35 0 0 chr11 105118709 105118738 -16725118 + AT_rich Low_complexity Low_complexity 1 29 0 3 1386 192 40 0 0 chr11 105118743 105118768 -16725088 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1386 343 229 0 0 chr11 105118830 105118891 -16724965 - RSINE1 SINE B4 -103 62 2 3 1386 1215 53 103 23 chr11 105118968 105119143 -16724713 - B2_Mm2 SINE B2 -4 191 3 3 173 762 215 79 35 chr11 105119630 105119832 -16724024 - B3 SINE B2 0 216 6 3 1387 216 274 0 31 chr11 105119863 105119927 -16723929 - PB1D7 SINE Alu -41 79 18 3 1387 38 0 0 0 chr11 105119941 105119979 -16723877 + AT_rich Low_complexity Low_complexity 1 38 0 3 1387 312 70 0 0 chr11 105120051 105120094 -16723762 + (TCC)n Simple_repeat Simple_repeat 3 45 0 3 1387 1191 68 0 0 chr11 105120094 105120240 -16723616 - B1_Mus2 SINE Alu 0 147 2 3 1387 258 297 55 0 chr11 105120261 105120352 -16723504 - B1F SINE Alu -3 146 51 3 1387 420 93 159 5 chr11 105121762 105121869 -16721987 - B2_Mm2 SINE B2 -8 187 46 3 1387 183 42 0 0 chr11 105121899 105121923 -16721933 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 3 1387 1121 70 0 0 chr11 105121924 105122080 -16721776 - B2_Mm2 SINE B2 -37 158 3 3 1387 459 274 0 17 chr11 105123595 105123710 -16720146 - PB1D9 SINE Alu -6 114 2 3 1387 501 276 88 39 chr11 105123759 105123888 -16719968 + B3 SINE B2 3 145 -71 3 1387 240 122 0 0 chr11 105123888 105123929 -16719927 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1387 501 276 88 39 chr11 105123929 105124003 -16719853 + B3 SINE B2 146 216 0 3 1387 531 204 28 0 chr11 105124296 105124404 -16719452 + B3 SINE B2 1 111 -105 3 1387 227 270 135 39 chr11 105124722 105124826 -16719030 - ID_B1 SINE B4 -10 214 101 3 1387 29 0 0 0 chr11 105125056 105125085 -16718771 + AT_rich Low_complexity Low_complexity 1 29 0 3 1387 284 386 61 14 chr11 105125088 105125235 -16718621 - RSINE1 SINE B4 -4 161 8 3 1387 471 360 42 14 chr11 105125229 105125443 -16718413 - B4A SINE B4 -62 230 11 3 1387 22 80 0 0 chr11 105125519 105125569 -16718287 + AT_rich Low_complexity Low_complexity 1 50 0 3 1387 692 188 52 46 chr11 105125571 105125744 -16718112 + B2_Mm2 SINE B2 2 175 -20 3 1387 461 243 27 0 chr11 105126061 105126172 -16717684 - PB1D7 SINE Alu -6 114 1 3 1387 24 0 0 0 chr11 105126758 105126782 -16717074 + AT_rich Low_complexity Low_complexity 1 24 0 3 1387 257 220 0 0 chr11 105127011 105127070 -16716786 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1387 620 286 62 43 chr11 105127078 105127170 -16716686 - B4 SINE B4 0 292 206 3 1387 411 38 0 0 chr11 105127170 105127223 -16716633 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 3 1387 620 286 62 43 chr11 105127223 105127338 -16716518 - B4 SINE B4 -87 205 82 3 1387 537 214 36 0 chr11 105127544 105127656 -16716200 - RSINE1 SINE B4 -38 127 12 4 1387 217 273 0 0 chr11 105127717 105127761 -16716095 + B1F SINE Alu 9 52 -97 4 1387 221 290 68 55 chr11 105127843 105127989 -16715867 - B4A SINE B4 -144 148 1 4 1387 1389 63 5 41 chr11 105128102 105128299 -16715557 + B2_Mm2 SINE B2 3 192 -3 4 1387 227 319 128 0 chr11 105128736 105128830 -16715026 - MER63B DNA AcHobo -18 418 313 4 1387 362 309 62 27 chr11 105128924 105129180 -16714676 - L1MB8 LINE L1 -102 6076 5812 4 1387 635 270 149 27 chr11 105129942 105130243 -16713613 + LTR33A_ LTR ERVL 192 529 -2 4 1387 532 118 20 0 chr11 105131803 105131885 -16711971 + (TCCCC)n Simple_repeat Simple_repeat 4 87 0 4 1387 693 36 0 0 chr11 105131885 105131969 -16711887 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 4 1387 768 182 11 6 chr11 105131969 105132146 -16711710 + CT-rich Low_complexity Low_complexity 2 179 0 4 1387 525 32 0 0 chr11 105133722 105133785 -16710071 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1387 334 212 14 145 chr11 105133795 105133933 -16709923 + MT2B LTR ERVL 145 264 -337 4 1387 639 192 33 0 chr11 105133830 105133950 -16709906 + B1_Mur1 SINE Alu 10 133 -16 4 1387 28 0 0 0 chr11 105133987 105134015 -16709841 + AT_rich Low_complexity Low_complexity 1 28 0 4 1387 606 82 0 0 chr11 105134094 105134179 -16709677 + BC1_Mm scRNA scRNA 1 85 -67 4 1387 705 237 0 7 chr11 105134310 105134450 -16709406 + B1_Mur2 SINE Alu 10 148 -1 4 1387 390 181 133 33 chr11 105134451 105134571 -16709285 + B1F1 SINE Alu 1 132 -17 4 1387 26 88 0 0 chr11 105134746 105134814 -16709042 + AT_rich Low_complexity Low_complexity 1 68 0 4 1387 1185 62 0 0 chr11 105135024 105135170 -16708686 + B1_Mus1 SINE Alu 2 147 -1 4 1387 1175 43 0 0 chr11 105136153 105136291 -16707565 - B1_Mus2 SINE Alu -9 138 1 4 1387 1617 37 11 0 chr11 105136668 105136859 -16706997 - B2_Mm1a SINE B2 0 193 1 4 1387 442 267 50 0 chr11 105137521 105137641 -16706215 - B1F1 SINE Alu 0 149 24 4 1387 735 246 142 17 chr11 105137789 105138029 -16705827 - B4A SINE B4 0 292 23 4 1387 772 196 0 33 chr11 105138042 105138195 -16705661 - B1_Mur1 SINE Alu 0 149 2 4 1387 815 232 56 171 chr11 105138363 105138685 -16705171 - MTD LTR MaLR -134 285 1 4 1387 537 264 0 0 chr11 105138685 105138804 -16705052 - B3A SINE B2 -76 122 4 4 1387 307 263 0 6 chr11 105138863 105138945 -16704911 + PB1D7 SINE Alu 1 80 -37 4 1387 647 132 58 0 chr11 105138942 105139063 -16704793 + B1_Mur4 SINE Alu 23 150 0 4 1387 323 200 66 13 chr11 105139095 105139171 -16704685 + ID4_ SINE ID 2 81 -2 4 1387 563 290 0 14 chr11 105139692 105139839 -16704017 - B1F SINE Alu 0 149 5 4 1387 934 241 19 5 chr11 105139888 105139913 -16703943 - B3 SINE B2 0 216 192 4 1387 189 0 0 0 chr11 105139913 105139934 -16703922 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1387 934 241 19 5 chr11 105139934 105140121 -16703735 - B3 SINE B2 -25 191 2 4 1387 347 97 125 0 chr11 105141282 105141354 -16702502 - Lx3A LINE L1 -3 6978 6898 4 1387 396 0 0 0 chr11 105141554 105141598 -16702258 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 4 1387 843 246 33 14 chr11 105141843 105142053 -16701803 + ID_B1 SINE B4 1 214 -10 4 1387 540 280 80 7 chr11 105145091 105145242 -16698614 + RSINE1 SINE B4 4 165 0 4 1387 298 263 164 8 chr11 105146093 105146227 -16697629 + MER5A DNA MER1_type 31 185 -4 4 1387 618 282 119 40 chr11 105147935 105148186 -16695670 + B4A SINE B4 7 277 -15 4 1387 776 168 35 0 chr11 105148570 105148713 -16695143 - B1_Mur4 SINE Alu 0 150 3 4 1387 844 146 23 28 chr11 105148754 105148930 -16694926 + URR1A DNA MER1_type 52 226 0 4 1387 23 0 0 0 chr11 105149027 105149050 -16694806 + AT_rich Low_complexity Low_complexity 1 23 0 4 1387 1246 41 34 34 chr11 105149050 105149225 -16694631 + B2_Mm2 SINE B2 2 176 -19 4 1387 522 185 28 0 chr11 105149842 105149950 -16693906 + PB1D9 SINE Alu 2 112 -8 4 1387 468 237 197 33 chr11 105149961 105150102 -16693754 + B3 SINE B2 1 152 -64 4 1387 324 70 0 0 chr11 105150102 105150145 -16693711 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1387 468 237 197 33 chr11 105150145 105150186 -16693670 + B3 SINE B2 153 212 -4 4 1387 891 170 14 7 chr11 105150201 105150349 -16693507 - B1_Mur2 SINE Alu 0 149 1 4 1387 696 176 13 47 chr11 105151627 105151776 -16692080 - B1F SINE Alu -4 145 2 4 1387 252 0 0 0 chr11 105152805 105152833 -16691023 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1387 678 109 0 0 chr11 105154299 105154400 -16689456 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 1387 429 70 0 0 chr11 105154801 105154858 -16688998 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1387 248 130 22 0 chr11 105155020 105155066 -16688790 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1387 207 146 0 47 chr11 105155850 105155893 -16687963 + G-rich Low_complexity Low_complexity 2 42 0 4 1387 362 333 27 7 chr11 105156475 105156623 -16687233 - MIRb SINE MIR -52 216 66 4 1387 346 276 76 93 chr11 105157629 105157865 -16685991 - ORR1E LTR MaLR -43 316 85 4 1387 267 79 0 0 chr11 105158228 105158266 -16685590 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 4 1387 204 40 0 0 chr11 105158317 105158342 -16685514 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1387 1062 63 0 14 chr11 105158342 105158487 -16685369 - B1_Mus1 SINE Alu 0 148 6 4 1387 493 221 21 62 chr11 105158531 105158676 -16685180 + B1_Mur4 SINE Alu 6 144 -6 4 1387 587 14 14 0 chr11 105158678 105158750 -16685106 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 4 1387 648 215 72 26 chr11 105159196 105159349 -16684507 + B3 SINE B2 39 198 -18 4 1387 235 237 158 0 chr11 105159760 105159836 -16684020 - MTEa LTR MaLR -7 372 285 4 1387 1081 182 5 36 chr11 105160522 105160744 -16683112 + B3 SINE B2 2 216 0 4 1387 568 160 19 9 chr11 105160789 105160896 -16682960 - B1_Mur4 SINE Alu 0 150 43 4 1387 809 199 93 23 chr11 105161025 105161241 -16682615 - B4A SINE B4 -61 231 1 4 1387 272 297 0 26 chr11 105162167 105162243 -16681613 + ID4_ SINE ID 4 77 -6 4 1387 346 89 0 67 chr11 105162369 105162429 -16681427 + B3A SINE B2 1 56 -142 4 1387 230 266 0 59 chr11 105162434 105162502 -16681354 + B4A SINE B4 229 292 0 4 1387 805 118 56 56 chr11 105162608 105162752 -16681104 + B1_Mur4 SINE Alu 1 144 -6 4 1387 195 139 0 0 chr11 105162761 105162797 -16681059 + (GAA)n Simple_repeat Simple_repeat 3 38 0 4 1387 1096 107 11 6 chr11 105162801 105162980 -16680876 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1387 607 189 18 0 chr11 105163216 105163327 -16680529 + MTC LTR MaLR 1 113 -308 4 1387 893 134 12 19 chr11 105163358 105163518 -16680338 + URR1A DNA MER1_type 68 226 0 4 1387 609 150 157 52 chr11 105163624 105163758 -16680098 - B1_Mur1 SINE Alu -1 148 1 4 1387 333 298 35 17 chr11 105163771 105163887 -16679969 - PB1D9 SINE Alu -2 118 1 4 1387 317 247 141 0 chr11 105163960 105164045 -16679811 - B1F SINE Alu -5 144 48 4 1387 519 189 278 0 chr11 105164059 105164228 -16679628 - ID_B1 SINE B4 -8 216 1 4 1387 774 128 71 39 chr11 105164247 105164401 -16679455 - MTC LTR MaLR -64 357 199 4 1387 279 0 0 0 chr11 105164735 105164766 -16679090 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 1387 1021 116 20 7 chr11 105164820 105164968 -16678888 + B1_Mur4 SINE Alu 1 150 0 4 1387 229 158 0 0 chr11 105164990 105165028 -16678828 + L1M5 LINE L1 5731 5768 -405 4 1387 307 282 97 0 chr11 105165045 105165148 -16678708 - RSINE1 SINE B4 -42 123 11 4 1387 782 186 20 14 chr11 105165528 105165675 -16678181 - B1_Mur1 SINE Alu -1 148 1 4 1387 189 0 0 0 chr11 105165678 105165699 -16678157 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1387 189 0 0 0 chr11 105165828 105165849 -16678007 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1387 1194 68 0 0 chr11 105165850 105165997 -16677859 - B1_Mus1 SINE Alu 0 148 2 4 1387 272 247 13 25 chr11 105165997 105166076 -16677780 + MurSatRep1 Unknown Unknown 230 307 -1830 4 1387 574 261 125 24 chr11 105166232 105166440 -16677416 + B4A SINE B4 46 274 -18 4 1387 378 0 0 0 chr11 105166458 105166500 -16677356 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1387 318 50 0 0 chr11 105166500 105166539 -16677317 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1387 526 253 71 136 chr11 105166714 105167135 -16676721 - RMER2 LTR ERV1 -27 540 5 4 1387 671 212 158 27 chr11 105167181 105167365 -16676491 + B3 SINE B2 9 216 0 4 1387 369 256 22 0 chr11 105167379 105167469 -16676387 - B3A SINE B2 -106 92 1 4 1387 216 266 0 30 chr11 105167721 105167787 -16676069 - RSINE1 SINE B4 -100 65 2 4 1387 410 170 16 131 chr11 105167803 105167925 -16675931 + MT2B LTR ERVL 157 264 -337 4 1387 904 129 0 21 chr11 105167818 105167960 -16675896 + B1_Mus1 SINE Alu 10 148 0 4 1387 232 49 0 68 chr11 105167965 105168009 -16675847 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 4 1387 807 159 57 14 chr11 105168605 105168617 -16675239 - B1_Mus1 SINE Alu 0 148 138 4 1387 207 0 0 0 chr11 105168617 105168640 -16675216 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1387 807 159 57 14 chr11 105168640 105168767 -16675089 - B1_Mus1 SINE Alu -11 137 3 4 1387 321 47 0 0 chr11 105168796 105168839 -16675017 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1387 372 238 28 56 chr11 105168842 105168949 -16674907 - PB1D10 SINE Alu -13 104 1 4 1387 593 289 27 4 chr11 105169272 105169460 -16674396 - B3A SINE B2 -25 191 2 5 1387 1265 48 0 0 chr11 105169514 105169661 -16674195 + B1_Mm SINE Alu 1 147 0 5 1387 396 0 0 0 chr11 105169661 105169705 -16674151 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1387 295 254 51 84 chr11 105169843 105170118 -16673738 - RMER17D LTR ERVK -362 527 262 5 1387 339 261 154 6 chr11 105170126 105170303 -16673553 - Charlie8 DNA MER1_type -2209 219 11 5 1387 513 234 9 26 chr11 105170367 105170481 -16673375 + PB1D10 SINE Alu 1 112 -5 5 1387 283 237 6 61 chr11 105170498 105170618 -16673238 + MIR SINE MIR 120 236 -32 5 1387 344 281 209 81 chr11 105170756 105171015 -16672841 + B4A SINE B4 1 292 0 5 1387 690 152 79 8 chr11 105171199 105171325 -16672531 + B1_Mus1 SINE Alu 7 141 -7 5 1387 308 185 77 0 chr11 105171343 105171408 -16672448 + B2_Mm2 SINE B2 2 71 -124 5 1387 336 48 0 0 chr11 105171476 105171518 -16672338 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1387 688 217 112 77 chr11 105171950 105172084 -16671772 - B3A SINE B2 -18 180 40 5 1387 695 146 203 0 chr11 105172084 105172207 -16671649 - B1_Mur3 SINE Alu 0 149 2 5 1387 688 217 112 77 chr11 105172207 105172242 -16671614 - B3A SINE B2 -159 39 5 5 1387 243 61 0 0 chr11 105173466 105173499 -16670357 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1387 297 0 0 0 chr11 105173508 105173541 -16670315 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1387 583 253 65 26 chr11 105173545 105173699 -16670157 - B3A SINE B2 -25 173 14 5 1387 471 241 0 41 chr11 105173702 105173823 -16670033 - PB1D10 SINE Alu -1 116 1 5 1387 180 316 12 81 chr11 105175307 105175393 -16668463 + L2c LINE L2 3266 3345 -42 5 1387 321 268 46 11 chr11 105175662 105175749 -16668107 + BC1_Mm scRNA scRNA 3 92 -60 5 1387 261 301 275 0 chr11 105175926 105176162 -16667694 - MLT1K LTR MaLR -279 316 16 5 1387 462 186 195 0 chr11 105176314 105176427 -16667429 - ID_B1 SINE B4 -1 223 89 5 1387 981 78 12 6 chr11 105176472 105176639 -16667217 + (TG)n Simple_repeat Simple_repeat 2 169 0 5 1387 342 0 0 0 chr11 105178162 105178200 -16665656 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1387 210 171 0 0 chr11 105178200 105178241 -16665615 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1387 299 302 166 51 chr11 105178270 105178427 -16665429 + B4A SINE B4 111 285 -7 5 1387 312 309 16 16 chr11 105178583 105178708 -16665148 - MLT1A0 LTR MaLR -23 342 218 5 1387 918 214 20 35 chr11 105178746 105178949 -16664907 - ID_B1 SINE B4 -23 201 2 5 1387 502 277 13 25 chr11 105178951 105179110 -16664746 - MLT1A0 LTR MaLR -206 159 3 5 1387 204 329 13 38 chr11 105179425 105179504 -16664352 - L2b LINE L2 -10 3365 3289 5 1387 353 284 0 0 chr11 105179734 105179815 -16664041 + RSINE1 SINE B4 12 92 -73 5 1387 333 0 0 0 chr11 105179815 105179852 -16664004 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1387 252 0 0 0 chr11 105179858 105179886 -16663970 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1387 1224 41 14 0 chr11 105179897 105180042 -16663814 - B1_Mus2 SINE Alu 0 147 1 5 1387 1156 194 24 0 chr11 105180717 105180928 -16662928 + B3 SINE B2 1 216 0 5 1387 1190 51 0 0 chr11 105180990 105181128 -16662728 + B1_Mm SINE Alu 1 138 -9 5 1387 266 0 29 0 chr11 105181128 105181162 -16662694 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1387 1277 41 0 0 chr11 105181170 105181317 -16662539 + B1_Mus2 SINE Alu 1 147 0 5 1387 309 331 37 37 chr11 105181317 105181452 -16662404 + L1MCc LINE L1 1335 1469 -4954 5 1387 2141 130 92 0 chr11 105181693 105182061 -16661795 - MTC LTR MaLR -2 419 18 5 1387 405 0 0 0 chr11 105182183 105182228 -16661628 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1387 2375 113 0 9 chr11 105182252 105182582 -16661274 - ORR1A2 LTR MaLR 0 327 1 5 1387 269 177 210 0 chr11 105182637 105182699 -16661157 - ID4_ SINE ID -6 77 3 5 1387 24 55 0 18 chr11 105182836 105182864 -16660992 + AT_rich Low_complexity Low_complexity 1 28 0 5 1387 7359 93 18 26 chr11 105182864 105183947 -16659909 - Lx3B LINE L1 0 6973 5900 5 1387 24 55 0 18 chr11 105183947 105183974 -16659882 + AT_rich Low_complexity Low_complexity 1 27 0 5 1387 438 281 26 0 chr11 105184052 105184166 -16659690 - PB1D10 SINE Alu 0 117 1 5 1387 864 274 138 94 chr11 105184626 105184989 -16658867 - MTE2a LTR MaLR 0 379 1 5 1387 375 270 151 65 chr11 105185202 105185388 -16658468 - L1MB8 LINE L1 -16 6162 5961 5 1387 700 324 27 45 chr11 105185666 105185826 -16658030 - MER44A DNA MER2_type -2 337 176 5 1387 1518 73 0 10 chr11 105185826 105186020 -16657836 + B2_Mm2 SINE B2 2 193 -2 5 1387 700 324 27 45 chr11 105186020 105186086 -16657770 - MER44A DNA MER2_type -164 175 111 5 1387 950 137 27 0 chr11 105186086 105186232 -16657624 + B1_Mur4 SINE Alu 1 150 0 5 1387 700 324 27 45 chr11 105186232 105186337 -16657519 - MER44A DNA MER2_type -229 110 12 5 1387 365 282 11 39 chr11 105186338 105186519 -16657337 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 5 1387 27 0 0 0 chr11 105187362 105187389 -16656467 + AT_rich Low_complexity Low_complexity 1 27 0 5 1387 648 228 137 16 chr11 105187393 105187576 -16656280 + B4A SINE B4 5 209 -83 5 1387 283 185 0 36 chr11 105187583 105187639 -16656217 + B1_Mur4 SINE Alu 2 55 -95 5 1387 226 214 110 55 chr11 105187696 105187805 -16656051 + RLTR25B LTR ERVK 397 511 -517 5 1387 443 196 87 0 chr11 105187740 105187832 -16656024 + B1_Mus2 SINE Alu 42 141 -6 5 1387 243 88 0 0 chr11 105187835 105187869 -16655987 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 5 1387 370 248 304 0 chr11 105188199 105188324 -16655532 + RSINE1 SINE B4 2 164 -1 5 1387 239 232 14 0 chr11 105188325 105188394 -16655462 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1387 236 237 143 13 chr11 105188703 105188780 -16655076 + ID_B1 SINE B4 133 219 -5 5 1387 387 242 130 10 chr11 105188892 105188992 -16654864 + RSINE1 SINE B4 2 113 -52 5 1387 627 274 23 73 chr11 105191106 105191326 -16652530 + B4 SINE B4 73 281 -11 5 1387 430 195 16 74 chr11 105191446 105191568 -16652288 + MER5A1 DNA MER1_type 30 144 -22 5 1387 863 189 7 7 chr11 105194580 105194734 -16649122 - B3 SINE B2 -59 157 4 5 1387 1142 82 0 13 chr11 105196212 105196361 -16647495 - B1_Mus2 SINE Alu 0 147 1 5 1387 394 285 85 13 chr11 105196419 105196572 -16647284 - RSINE1 SINE B4 0 165 2 5 1387 1127 195 127 12 chr11 105196648 105196907 -16646949 - B4 SINE B4 -2 290 2 5 1387 1083 106 0 0 chr11 105196927 105197087 -16646769 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 5 1387 282 313 0 35 chr11 105197087 105197163 -16646693 - ID4_ SINE ID -8 75 1 5 1387 305 260 26 0 chr11 105198268 105198345 -16645511 + MIRb SINE MIR 115 193 -75 5 1387 547 228 52 9 chr11 105198424 105198539 -16645317 - PB1D7 SINE Alu 0 120 1 5 1387 332 164 0 15 chr11 105198545 105198613 -16645243 + CT-rich Low_complexity Low_complexity 2 68 0 5 1387 794 148 96 0 chr11 105198613 105198748 -16645108 - B1_Mus1 SINE Alu 0 148 1 5 1387 324 0 0 0 chr11 105199556 105199592 -16644264 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1387 361 276 65 19 chr11 105199608 105199715 -16644141 - PB1D7 SINE Alu -8 112 1 5 1387 590 223 16 8 chr11 105199717 105199839 -16644017 - ID_B1 SINE B4 -21 203 81 5 1387 192 272 148 0 chr11 105199873 105199954 -16643902 - MIR SINE MIR -66 142 50 5 1387 1211 32 0 31 chr11 105201158 105201385 -16642471 + (CA)n Simple_repeat Simple_repeat 1 220 0 5 1387 347 338 41 7 chr11 105202832 105202978 -16640878 + MIRc SINE MIR 40 190 -78 5 1387 202 299 0 0 chr11 105203029 105203096 -16640760 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1387 693 164 104 7 chr11 105203112 105203247 -16640609 - B1_Mur2 SINE Alu -1 148 1 5 1387 684 218 0 34 chr11 105203280 105203427 -16640429 - B1_Mur4 SINE Alu -2 148 7 5 1387 409 258 45 45 chr11 105203317 105203451 -16640405 - B4 SINE B4 -87 205 72 5 1387 719 283 11 27 chr11 105203491 105203676 -16640180 - B3A SINE B2 -16 182 1 5 1387 282 276 31 123 chr11 105205125 105205352 -16638504 - Charlie7a DNA MER1_type 0 272 67 5 1387 1189 82 0 0 chr11 105205357 105205504 -16638352 + B1_Mus1 SINE Alu 1 147 -1 5 1387 22 0 0 0 chr11 105205549 105205571 -16638285 + AT_rich Low_complexity Low_complexity 1 22 0 5 1387 404 281 65 60 chr11 105205653 105205869 -16637987 - L1MA4 LINE L1 0 6300 6084 5 1387 241 232 71 35 chr11 105205888 105205973 -16637883 - L1MA6 LINE L1 -206 6094 6007 5 1387 891 134 0 40 chr11 105206018 105206166 -16637690 - B1_Mur4 SINE Alu 0 150 9 5 1387 676 216 198 6 chr11 105206168 105206345 -16637511 - ID_B1 SINE B4 -8 216 6 5 1387 845 309 19 12 chr11 105206386 105206645 -16637211 - B4A SINE B4 -8 284 24 5 1387 646 228 91 23 chr11 105206711 105206886 -16636970 - B3 SINE B2 0 216 30 5 1387 396 323 22 62 chr11 105207098 105207152 -16636704 + ID SINE ID 6 60 -164 5 1387 213 39 0 0 chr11 105207152 105207178 -16636678 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 5 1387 396 323 22 62 chr11 105207178 105207301 -16636555 + ID_B1 SINE B4 61 175 -49 5 1387 499 131 0 23 chr11 105207237 105207323 -16636533 + PB1D10 SINE Alu 32 115 -2 5 1387 785 255 47 77 chr11 105210350 105210648 -16633208 + B4A SINE B4 2 290 -2 5 1387 195 270 67 13 chr11 105210699 105210774 -16633082 + MIR SINE MIR 113 191 -71 5 1387 402 57 0 0 chr11 105211793 105211846 -16632010 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1387 237 259 149 61 chr11 105212592 105212773 -16631083 + MIRb SINE MIR 72 268 0 5 1387 510 17 0 0 chr11 105212799 105212858 -16630998 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1387 209 371 77 26 chr11 105213008 105213163 -16630693 - L2 LINE L2 -586 2833 2671 6 1387 226 344 10 41 chr11 105213351 105213448 -16630408 + Charlie6 DNA MER1_type 221 314 -3186 6 1387 351 0 0 0 chr11 105213536 105213575 -16630281 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1387 462 18 0 0 chr11 105213950 105214005 -16629851 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1387 476 276 45 13 chr11 105214020 105214174 -16629682 - B4A SINE B4 -103 189 31 6 1387 255 61 0 0 chr11 105215396 105215429 -16628427 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1387 241 323 41 95 chr11 105215607 105215754 -16628102 - MER2 DNA MER2_type 0 345 207 6 1387 1018 239 0 5 chr11 105215883 105216093 -16627763 - B3 SINE B2 -6 210 2 6 1387 186 307 93 111 chr11 105216182 105216398 -16627458 + MIRb SINE MIR 44 255 -13 6 1387 723 143 127 25 chr11 105216698 105216856 -16627000 - RMER1B Other Other -4 1062 889 6 1387 1004 118 34 14 chr11 105217089 105217235 -16626621 + B1_Mur4 SINE Alu 2 150 0 6 1387 827 264 186 4 chr11 105217291 105217538 -16626318 - B4A SINE B4 0 292 1 6 1387 1033 135 146 0 chr11 105217568 105217760 -16626096 - URR1A DNA MER1_type -6 220 1 6 1387 321 154 134 30 chr11 105218091 105218158 -16625698 - ID4 SINE ID -5 78 5 6 1387 327 260 27 0 chr11 105218179 105218252 -16625604 - ID_B1 SINE B4 -4 220 146 6 1387 247 339 71 71 chr11 105218180 105218307 -16625549 - B1F SINE Alu -5 144 18 6 1387 256 243 56 14 chr11 105218290 105218361 -16625495 - RSINE1 SINE B4 -18 147 74 6 1387 1294 216 126 22 chr11 105218375 105218642 -16625214 - MTD LTR MaLR -17 402 114 6 1387 1008 46 76 15 chr11 105218642 105218768 -16625088 + B1_Mm SINE Alu 2 137 -10 6 1387 608 0 14 0 chr11 105218768 105218840 -16625016 + (CAAAA)n Simple_repeat Simple_repeat 2 74 0 6 1387 1294 216 126 22 chr11 105218845 105218941 -16624915 - MTD LTR MaLR -306 113 1 6 1387 2166 137 21 57 chr11 105218950 105219130 -16624726 + RMER17C LTR ERVK 1 184 -226 6 1387 660 87 0 0 chr11 105219130 105219222 -16624634 + (TTC)n Simple_repeat Simple_repeat 3 94 0 6 1387 2166 137 21 57 chr11 105219222 105219466 -16624390 + RMER17C LTR ERVK 185 410 0 6 1387 365 271 34 5 chr11 105219608 105219754 -16624102 - B3 SINE B2 0 216 1 6 1387 665 254 129 6 chr11 105220371 105220549 -16623307 + B3 SINE B2 2 201 -15 6 1387 3075 110 31 14 chr11 105220550 105221065 -16622791 - RLTR28 LTR ERVL 0 524 1 6 1387 240 86 0 0 chr11 105221148 105221183 -16622673 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1387 393 271 25 8 chr11 105221214 105221333 -16622523 - ID_B1 SINE B4 -77 147 27 6 1387 444 234 17 28 chr11 105221489 105221661 -16622195 - L1ME1 LINE L1 -320 6039 5872 6 1387 466 228 89 0 chr11 105221741 105221842 -16622014 - PB1D10 SINE Alu -7 110 1 6 1387 210 241 0 36 chr11 105224018 105224029 -16619827 - B1F SINE Alu 0 149 139 6 1387 497 44 0 14 chr11 105224029 105224098 -16619758 + (TGG)n Simple_repeat Simple_repeat 3 70 0 6 1387 210 241 0 36 chr11 105224098 105224142 -16619714 - B1F SINE Alu -11 138 96 6 1387 331 312 98 17 chr11 105224936 105225109 -16618747 + MER5A DNA MER1_type 2 188 -1 6 1387 774 75 0 0 chr11 105227285 105227391 -16616465 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 1387 363 278 158 18 chr11 105228046 105228073 -16615783 - B2_Mm2 SINE B2 -7 188 160 6 1387 279 0 0 0 chr11 105228073 105228104 -16615752 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1387 482 277 197 0 chr11 105228104 105228241 -16615615 - B3A SINE B2 -34 164 1 6 1387 226 374 55 18 chr11 105228246 105228355 -16615501 + L2b LINE L2 3245 3357 -18 6 1387 4169 97 110 2 chr11 105228980 105229588 -16614268 + RLTR33 LTR ERVK 1 674 -4 6 1387 826 254 94 128 chr11 105229697 105229853 -16614003 + MTEa LTR MaLR 1 173 -206 6 1387 580 246 13 40 chr11 105229853 105230005 -16613851 + B1_Mur1 SINE Alu 1 148 -1 6 1387 826 254 94 128 chr11 105230005 105230192 -16613664 + MTEa LTR MaLR 174 331 -48 6 1387 210 118 0 0 chr11 105230192 105230226 -16613630 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 6 1387 826 254 94 128 chr11 105230226 105230265 -16613591 + MTEa LTR MaLR 332 371 -8 6 1387 951 55 39 0 chr11 105230568 105230695 -16613161 + B2_Mm2 SINE B2 2 133 -62 6 1387 324 0 0 0 chr11 105230748 105230784 -16613072 + (TC)n Simple_repeat Simple_repeat 2 37 0 6 1387 480 18 0 0 chr11 105230784 105230840 -16613016 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1387 589 196 135 0 chr11 105230841 105230974 -16612882 - B3A SINE B2 -47 151 1 6 1387 24 0 0 0 chr11 105231418 105231442 -16612414 + AT_rich Low_complexity Low_complexity 1 24 0 6 1387 246 32 0 0 chr11 105231556 105231587 -16612269 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1387 832 239 91 5 chr11 105231691 105231889 -16611967 - ID_B1 SINE B4 -1 223 9 6 1387 419 250 42 0 chr11 105231906 105232002 -16611854 - PB1D9 SINE Alu 0 120 21 6 1387 260 268 0 27 chr11 105232153 105232226 -16611630 + GA-rich Low_complexity Low_complexity 6 76 0 6 1387 186 192 0 0 chr11 105232664 105232716 -16611140 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1387 231 173 0 0 chr11 105233764 105233816 -16610040 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1387 486 0 0 0 chr11 105233818 105233872 -16609984 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1387 533 276 71 31 chr11 105233944 105234168 -16609688 - Lx8 LINE L1 -2 7471 7239 6 1387 345 107 18 18 chr11 105234366 105234423 -16609433 - HAL1-3A_ME LINE L1 -828 2030 1974 6 1387 324 0 0 0 chr11 105235592 105235628 -16608228 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1387 347 254 102 70 chr11 105236427 105236584 -16607272 - RSINE1 SINE B4 0 165 4 6 1387 218 278 115 44 chr11 105237117 105237230 -16606626 + MIRm SINE MIR 144 264 -12 6 1387 312 27 0 0 chr11 105237286 105237323 -16606533 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1387 256 264 40 27 chr11 105237889 105237963 -16605893 - ID_B1 SINE B4 -2 222 148 6 1387 1306 71 17 12 chr11 105238129 105238322 -16605534 - B2_Mm2 SINE B2 -13 203 2 6 1387 415 254 69 0 chr11 105238476 105238606 -16605250 - MER33 DNA MER1_type -22 302 164 6 1387 818 197 13 6 chr11 105238928 105239086 -16604770 - RSINE1 SINE B4 -5 160 2 6 1387 243 0 0 0 chr11 105239275 105239302 -16604554 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1387 700 246 66 39 chr11 105239303 105239485 -16604371 - B3 SINE B2 -16 200 14 6 1387 3094 219 86 52 chr11 105239803 105240664 -16603192 + RMER19B LTR ERVK 1 890 -12 6 1387 1579 209 166 87 chr11 105240722 105241193 -16602663 - RLTR18B LTR ERVK -4 508 1 6 1387 963 187 105 21 chr11 105241254 105241445 -16602411 - B3 SINE B2 -4 212 6 6 1387 1216 54 0 0 chr11 105241465 105241612 -16602244 - B1_Mus2 SINE Alu 0 147 1 6 1387 2320 161 37 15 chr11 105242056 105242459 -16601397 - MTC LTR MaLR -5 416 5 6 1387 362 260 137 0 chr11 105242475 105242621 -16601235 - MER33 DNA MER1_type -158 166 1 6 1387 560 186 134 101 chr11 105243216 105243425 -16600431 - B3 SINE B2 0 216 1 6 1387 258 81 0 0 chr11 105243649 105243686 -16600170 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1387 4625 102 42 65 chr11 105244448 105245276 -16598580 - RMER17D2 LTR ERVK 0 809 1 6 1387 1626 40 0 5 chr11 105245438 105245637 -16598219 + MTB LTR MaLR 203 400 0 6 1387 1033 220 0 11 chr11 105246117 105246301 -16597555 - B3A SINE B2 -16 182 1 6 1387 267 267 52 26 chr11 105247180 105247257 -16596599 + ID4_ SINE ID 2 80 -3 6 1387 207 0 0 0 chr11 105247434 105247457 -16596399 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1387 204 125 0 0 chr11 105247613 105247645 -16596211 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1387 262 331 50 0 chr11 105247694 105247815 -16596041 - B4A SINE B4 -1 291 165 6 1387 530 250 8 43 chr11 105247771 105247888 -16595968 - B1_Mur1 SINE Alu -5 144 32 6 1387 594 307 66 57 chr11 105247903 105248131 -16595725 - B4A SINE B4 -62 230 1 6 1387 322 241 151 35 chr11 105248327 105248559 -16595297 + L1M5 LINE L1 4154 4412 -1734 6 1387 471 220 99 18 chr11 105248960 105249071 -16594785 + B1_Mur4 SINE Alu 31 150 0 6 1387 610 246 58 82 chr11 105249425 105249633 -16594223 + B4A SINE B4 90 292 0 6 1387 467 83 28 0 chr11 105250384 105250456 -16593400 + (TATG)n Simple_repeat Simple_repeat 3 76 0 6 1387 477 213 109 8 chr11 105250491 105250619 -16593237 - RSINE1 SINE B4 -22 143 3 6 1388 21 36 0 0 chr11 105252846 105252874 -16590982 + AT_rich Low_complexity Low_complexity 1 28 0 6 1388 917 233 57 34 chr11 105253056 105253318 -16590538 + B4 SINE B4 2 269 -23 6 1388 405 58 0 0 chr11 105253318 105253370 -16590486 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1388 221 266 90 75 chr11 105253560 105253694 -16590162 - MIRb SINE MIR -127 141 3 6 1388 351 0 0 0 chr11 105254346 105254385 -16589471 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1388 347 252 16 16 chr11 105255616 105255737 -16588119 + (TATATG)n Simple_repeat Simple_repeat 4 124 0 6 1388 189 121 0 0 chr11 105255743 105255776 -16588080 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1388 248 33 0 0 chr11 105255917 105255947 -16587909 + ORR1D1 LTR MaLR 1 30 -337 6 1388 1273 111 0 0 chr11 105255949 105256121 -16587735 + B2_Mm2 SINE B2 2 173 -22 6 1388 342 0 0 0 chr11 105256122 105256160 -16587696 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1388 1640 136 63 25 chr11 105256166 105256452 -16587404 + ORR1D1 LTR MaLR 25 321 -53 6 1388 259 115 91 76 chr11 105256454 105256520 -16587336 + ORR1D1 LTR MaLR 288 354 -24 6 1388 507 301 36 7 chr11 105256516 105256653 -16587203 - B4 SINE B4 -106 186 46 6 1388 477 0 0 0 chr11 105256672 105256725 -16587131 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1388 298 360 0 0 chr11 105256786 105256900 -16586956 - L1M5 LINE L1 -469 5655 5542 6 1388 383 338 56 47 chr11 105257255 105257488 -16586368 - MIRb SINE MIR -30 238 4 7 1388 207 366 67 30 chr11 105258537 105258672 -16585184 + MIRc SINE MIR 12 151 -117 7 1388 851 235 24 0 chr11 105258775 105258945 -16584911 - B3A SINE B2 -24 174 1 7 1388 306 0 0 0 chr11 105260081 105260115 -16583741 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1388 496 223 55 41 chr11 105260116 105260261 -16583595 - RSINE1 SINE B4 -16 149 3 7 1388 25 31 0 0 chr11 105260782 105260814 -16583042 + AT_rich Low_complexity Low_complexity 1 32 0 7 1388 809 212 16 53 chr11 105260958 105261147 -16582709 + B3A SINE B2 1 182 -16 7 1388 633 14 0 0 chr11 105264036 105264110 -16579746 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1388 259 323 31 46 chr11 105264231 105264413 -16579443 + MIRc SINE MIR 16 187 -21 7 1388 1103 239 80 86 chr11 105264473 105264835 -16579021 - MTE2a LTR MaLR 0 379 20 7 1388 229 138 14 71 chr11 105265437 105265507 -16578349 + T-rich Low_complexity Low_complexity 4 69 0 7 1388 814 265 23 36 chr11 105266550 105266769 -16577087 - B3 SINE B2 0 216 1 7 1388 324 324 54 9 chr11 105267024 105267136 -16576720 - MIRm SINE MIR -124 152 36 7 1388 1587 6 0 0 chr11 105267806 105267986 -16575870 + L1Md_A LINE L1 6403 6582 0 7 1388 339 25 0 0 chr11 105268030 105268070 -16575786 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1388 360 197 0 112 chr11 105268155 105268235 -16575621 - PB1D10 SINE Alu -5 112 42 7 1388 21 36 0 0 chr11 105272200 105272228 -16571628 + AT_rich Low_complexity Low_complexity 1 28 0 7 1388 264 283 104 128 chr11 105272371 105272582 -16571274 + MIRb SINE MIR 36 241 -27 7 1388 216 0 0 0 chr11 105273145 105273169 -16570687 + (CCAA)n Simple_repeat Simple_repeat 3 26 0 7 1388 442 301 0 2 chr11 105273861 105273970 -16569886 - PB1D9 SINE Alu -41 108 2 7 1388 369 0 0 0 chr11 105273973 105274014 -16569842 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1388 187 317 62 62 chr11 105274026 105274154 -16569702 + L2b LINE L2 3187 3314 -61 7 1388 252 184 0 0 chr11 105274357 105274406 -16569450 + G-rich Low_complexity Low_complexity 3 51 0 7 1388 1324 108 0 5 chr11 105274612 105274798 -16569058 - B2_Mm2 SINE B2 -8 187 3 7 1388 911 159 0 0 chr11 105274975 105275113 -16568743 + B1_Mus1 SINE Alu 1 138 -10 7 1388 240 154 0 0 chr11 105275146 105275198 -16568658 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 7 1388 376 129 20 51 chr11 105275242 105275340 -16568516 + Lx2 LINE L1 6903 6997 0 7 1388 586 167 204 0 chr11 105275420 105275528 -16568328 - B1_Mur2 SINE Alu -19 130 1 7 1388 523 340 130 40 chr11 105275538 105276218 -16567638 - L1MC4 LINE L1 -201 7841 7082 7 1388 575 281 122 24 chr11 105276218 105276473 -16567383 + B4A SINE B4 1 280 -12 7 1388 555 149 14 28 chr11 105276503 105276648 -16567208 + (CAGA)n Simple_repeat Simple_repeat 4 146 0 7 1388 856 224 141 8 chr11 105276666 105276922 -16566934 + B4A SINE B4 1 290 -2 7 1388 601 230 66 0 chr11 105277071 105277223 -16566633 + RSINE1 SINE B4 2 163 -2 7 1388 1153 194 139 75 chr11 105277262 105277664 -16566192 - RMER10A LTR ERVL -14 428 1 7 1388 298 183 281 31 chr11 105277755 105277851 -16566005 - PB1D9 SINE Alu 0 120 1 7 1388 280 220 34 0 chr11 105277871 105277930 -16565926 + PB1D10 SINE Alu 55 115 -2 7 1388 21 0 0 0 chr11 105278549 105278570 -16565286 + GC_rich Low_complexity Low_complexity 1 21 0 7 1388 216 97 0 0 chr11 105278798 105278829 -16565027 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1388 881 142 0 72 chr11 105278831 105278983 -16564873 - B1_Mus1 SINE Alu 0 148 8 7 1388 432 252 37 171 chr11 105278836 105279023 -16564833 - B4 SINE B4 -71 221 60 7 1388 291 288 15 0 chr11 105279052 105279118 -16564738 + ID_B1 SINE B4 83 149 -75 7 1388 332 236 188 73 chr11 105279061 105279157 -16564699 + PB1D10 SINE Alu 11 117 0 7 1388 273 285 80 31 chr11 105279255 105279418 -16564438 + L1ME2z LINE L1 5996 6166 -278 7 1388 1273 162 9 28 chr11 105279579 105279795 -16564061 - URR1B DNA MER1_type -10 215 4 7 1388 467 123 14 0 chr11 105279805 105279878 -16563978 - MTE2a LTR MaLR 0 379 306 7 1388 365 179 45 0 chr11 105279884 105279951 -16563905 - B3 SINE B2 -63 153 84 7 1388 848 112 337 0 chr11 105280007 105280176 -16563680 + URR1A DNA MER1_type 1 226 0 7 1388 891 239 112 9 chr11 105280194 105280426 -16563430 + B4 SINE B4 27 282 -10 7 1388 24 0 0 0 chr11 105280437 105280461 -16563395 + AT_rich Low_complexity Low_complexity 1 24 0 7 1388 448 228 17 26 chr11 105280880 105280997 -16562859 + PB1D10 SINE Alu 2 117 0 7 1388 306 315 18 18 chr11 105281187 105281297 -16562559 - L2 LINE L2 -976 2443 2334 7 1388 669 239 179 25 chr11 105281383 105281785 -16562071 + Charlie4a DNA MER1_type 45 508 0 7 1388 444 19 0 0 chr11 105281958 105282011 -16561845 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1388 352 238 195 32 chr11 105282043 105282264 -16561592 - L2 LINE L2 -1402 2017 1761 7 1388 333 0 0 0 chr11 105282547 105282584 -16561272 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1388 261 354 41 30 chr11 105282613 105282782 -16561074 - L2 LINE L2 -2580 839 669 7 1388 1041 39 0 0 chr11 105283097 105283227 -16560629 + (TCCA)n Simple_repeat Simple_repeat 3 132 0 7 1388 3388 53 0 0 chr11 105283302 105283698 -16560158 + MTA_Mm LTR MaLR 1 396 0 7 1388 261 263 58 48 chr11 105283770 105283874 -16559982 + L2c LINE L2 3270 3374 -13 7 1388 34 72 0 0 chr11 105283890 105283959 -16559897 + AT_rich Low_complexity Low_complexity 1 69 0 7 1388 216 0 0 0 chr11 105285445 105285469 -16558387 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 7 1388 534 216 75 80 chr11 105285618 105285636 -16558220 + B4 SINE B4 70 125 -167 7 1388 1137 43 7 0 chr11 105285636 105285777 -16558079 + B1_Mm SINE Alu 6 147 0 7 1388 534 216 75 80 chr11 105285777 105285824 -16558032 + B4 SINE B4 126 286 -6 7 1388 378 0 0 0 chr11 105286171 105286213 -16557643 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1388 504 0 0 0 chr11 105286518 105286574 -16557282 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1388 556 259 7 15 chr11 105286835 105286972 -16556884 + B3 SINE B2 81 216 0 7 1388 279 267 53 98 chr11 105287017 105287150 -16556706 - RSINE1 SINE B4 -36 129 3 7 1388 469 288 21 70 chr11 105287164 105287306 -16556550 - ID_B1 SINE B4 0 224 90 7 1388 634 259 43 87 chr11 105287360 105287419 -16556437 - B4A SINE B4 -4 288 91 7 1388 858 160 0 27 chr11 105287419 105287567 -16556289 - B1_Mur2 SINE Alu 0 149 6 7 1388 265 314 148 0 chr11 105287590 105287759 -16556097 - B4A SINE B4 -78 214 21 7 1388 577 203 102 53 chr11 105288157 105288212 -16555644 - B3A SINE B2 0 198 148 7 1388 297 51 0 0 chr11 105288212 105288251 -16555605 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1388 577 203 102 53 chr11 105288251 105288382 -16555474 - B3A SINE B2 -51 147 3 7 1388 4543 8 2 0 chr11 105289493 105289985 -16553871 + MT2_Mm LTR ERVL 1 493 0 7 1388 48521 14 6 0 chr11 105289985 105295311 -16548545 + MERVL-int LTR ERVL 1 5360 -125 7 1388 403 167 46 35 chr11 105295311 105295398 -16548458 + ORR1A3-int LTR MaLR 553 640 -1323 7 1388 319 0 0 0 chr11 105295398 105295436 -16548420 + MERVL-int LTR ERVL 5448 5485 0 7 1388 4543 8 2 0 chr11 105295436 105295928 -16547928 + MT2_Mm LTR ERVL 1 493 0 7 1388 621 243 21 0 chr11 105296797 105296937 -16546919 - B1_Mur1 SINE Alu -5 144 2 7 1388 21 0 0 0 chr11 105297430 105297451 -16546405 + AT_rich Low_complexity Low_complexity 1 21 0 7 1388 408 20 0 0 chr11 105298171 105298220 -16545636 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1388 1474 198 164 17 chr11 105298235 105298594 -16545262 + MTD LTR MaLR 5 416 -3 7 1388 250 286 155 0 chr11 105298595 105298679 -16545177 - PB1D10 SINE Alu -11 106 10 7 1388 230 270 149 0 chr11 105298618 105298692 -16545164 - ID_B1 SINE B4 -63 161 77 7 1388 1421 71 27 0 chr11 105298704 105298888 -16544968 - B2_Mm2 SINE B2 -6 189 1 7 1388 521 221 21 0 chr11 105298889 105298984 -16544872 - B2_Mm2 SINE B2 -94 101 5 7 1388 594 285 23 0 chr11 105299012 105299142 -16544714 + ID_B1 SINE B4 81 213 -11 7 1388 230 209 0 0 chr11 105299205 105299248 -16544608 + MIRb SINE MIR 182 224 -44 7 1388 771 276 1 82 chr11 105299809 105300034 -16543822 - B4 SINE B4 -76 216 12 7 1388 405 0 0 0 chr11 105300059 105300104 -16543752 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1388 471 299 34 28 chr11 105300580 105300759 -16543097 - B3A SINE B2 -18 180 1 7 1388 1228 294 25 12 chr11 105301033 105301357 -16542499 + Tigger7 DNA MER2_type 29 356 -2135 7 1388 664 276 63 98 chr11 105301465 105301782 -16542074 - MTE2a LTR MaLR -62 317 12 7 1388 1436 69 32 0 chr11 105301791 105301980 -16541876 + B2_Mm2 SINE B2 1 195 0 7 1388 459 252 156 64 chr11 105302435 105302761 -16541095 - Lx9 LINE L1 -52 7592 7237 7 1388 222 37 0 0 chr11 105302770 105302797 -16541059 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1388 1175 88 0 0 chr11 105302799 105302947 -16540909 - B1_Mus1 SINE Alu 0 148 1 7 1388 495 0 0 0 chr11 105303095 105303150 -16540706 + (TTA)n Simple_repeat Simple_repeat 2 56 0 7 1388 656 243 27 38 chr11 105303586 105303770 -16540086 + B3A SINE B2 1 182 -16 7 1388 417 20 0 0 chr11 105303770 105303820 -16540036 + (GA)n Simple_repeat Simple_repeat 2 51 0 7 1388 371 333 60 37 chr11 105303956 105304090 -16539766 - RSINE1 SINE B4 -28 137 1 7 1388 188 274 79 16 chr11 105305390 105305453 -16538403 - L3 LINE CR1 -265 4224 4158 7 1388 582 253 9 135 chr11 105305595 105305810 -16538046 - ID_B1 SINE B4 0 224 37 7 1388 717 254 10 51 chr11 105305810 105306005 -16537851 + MTD LTR MaLR 1 187 -232 7 1388 21 36 0 0 chr11 105306243 105306271 -16537585 + AT_rich Low_complexity Low_complexity 1 28 0 7 1388 221 133 0 22 chr11 105306652 105306675 -16537181 + polypurine Low_complexity Low_complexity 5 27 0 8 1388 189 0 0 0 chr11 105306675 105306696 -16537160 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1388 221 133 0 22 chr11 105306696 105306718 -16537138 + polypurine Low_complexity Low_complexity 28 48 0 8 1388 603 0 0 0 chr11 105306720 105306787 -16537069 + (GAA)n Simple_repeat Simple_repeat 3 69 0 8 1388 552 207 58 91 chr11 105307308 105307462 -16536394 + RMER30 DNA MER1_type 2 150 -52 8 1388 318 286 35 18 chr11 105307598 105307712 -16536144 - PB1D10 SINE Alu -1 116 1 8 1388 771 167 8 0 chr11 105307799 105307931 -16535925 + B1_Mus2 SINE Alu 2 134 -13 8 1388 495 0 0 0 chr11 105307931 105307986 -16535870 + (GAAAA)n Simple_repeat Simple_repeat 2 56 0 8 1388 232 284 136 10 chr11 105308028 105308131 -16535725 + L1MB7 LINE L1 6040 6155 -29 8 1388 214 288 0 15 chr11 105308262 105308329 -16535527 + G-rich Low_complexity Low_complexity 2 67 0 8 1388 240 235 44 0 chr11 105309297 105309365 -16534491 + ID SINE ID 3 73 -151 8 1388 350 284 99 47 chr11 105309792 105309984 -16533872 + L2 LINE L2 2653 2854 -565 8 1388 183 262 45 15 chr11 105310097 105310163 -16533693 + L2 LINE L2 3014 3081 -338 8 1388 252 59 0 0 chr11 105310281 105310315 -16533541 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1388 285 304 53 9 chr11 105310527 105310640 -16533216 - ORR1E LTR MaLR -222 137 20 8 1388 229 163 0 104 chr11 105310737 105310785 -16533071 + L2a LINE L2 3378 3420 -6 8 1388 348 305 156 78 chr11 105311766 105312022 -16531834 - B4A SINE B4 -16 276 1 8 1388 245 228 35 0 chr11 105312037 105312094 -16531762 - B4A SINE B4 -233 59 1 8 1388 432 0 0 0 chr11 105312504 105312552 -16531304 + (GA)n Simple_repeat Simple_repeat 1 48 0 8 1388 191 260 144 10 chr11 105313253 105313350 -16530506 - L2 LINE L2 -423 2996 2887 8 1388 195 129 0 0 chr11 105313402 105313433 -16530423 + (TATG)n Simple_repeat Simple_repeat 4 34 0 8 1388 667 272 198 68 chr11 105313499 105313751 -16530105 - B4A SINE B4 0 292 8 8 1388 218 200 0 18 chr11 105313913 105313969 -16529887 + G-rich Low_complexity Low_complexity 4 58 0 8 1388 216 0 0 0 chr11 105316317 105316341 -16527515 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1388 202 289 0 0 chr11 105316801 105316846 -16527010 + (CATG)n Simple_repeat Simple_repeat 4 48 0 8 1388 204 111 0 0 chr11 105316875 105316911 -16526945 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1388 435 306 55 7 chr11 105319361 105319506 -16524350 - RSINE1 SINE B4 0 165 14 8 1388 352 226 231 19 chr11 105319647 105319751 -16524105 + ID_B1 SINE B4 8 133 -91 8 1388 187 231 0 0 chr11 105320141 105320180 -16523676 + MIRb SINE MIR 166 204 -64 8 1388 1347 40 16 38 chr11 105320294 105320477 -16523379 - B2_Mm1a SINE B2 -14 179 1 8 1388 384 262 20 42 chr11 105320482 105320625 -16523231 - PB1D10 SINE Alu -1 148 3 8 1388 297 0 0 0 chr11 105321149 105321182 -16522674 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1388 384 216 0 0 chr11 105321182 105321284 -16522572 + GA-rich Low_complexity Low_complexity 1 102 0 8 1388 639 130 55 18 chr11 105321504 105321614 -16522242 + PB1D10 SINE Alu 3 116 -1 8 1388 868 243 10 21 chr11 105321628 105321821 -16522035 + B3A SINE B2 8 198 0 8 1388 637 253 52 7 chr11 105322050 105322205 -16521651 - RSINE1 SINE B4 -2 163 2 8 1388 775 225 36 130 chr11 105322373 105322674 -16521182 + B4A SINE B4 2 274 -18 8 1388 274 269 129 71 chr11 105322694 105322834 -16521022 - RMER12 LTR ERVK -472 850 703 8 1388 459 0 0 0 chr11 105322842 105322893 -16520963 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1388 1684 252 96 70 chr11 105322945 105323500 -16520356 - RLTR18 LTR ERVK -47 569 1 8 1388 490 300 8 52 chr11 105323541 105323728 -16520128 - B4 SINE B4 -52 172 1 8 1388 245 339 0 0 chr11 105325159 105325215 -16518641 + ID2 SINE ID 20 75 -8 8 1388 189 0 0 0 chr11 105325436 105325457 -16518399 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1388 626 260 69 58 chr11 105325750 105326024 -16517832 - B4 SINE B4 -15 277 1 8 1388 390 42 0 0 chr11 105326751 105326799 -16517057 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 8 1388 351 0 0 0 chr11 105326799 105326838 -16517018 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1388 484 238 57 0 chr11 105326867 105326972 -16516884 - RSINE1 SINE B4 -35 130 20 8 1388 258 32 0 0 chr11 105327080 105327111 -16516745 + (CATG)n Simple_repeat Simple_repeat 4 34 0 8 1388 212 246 0 16 chr11 105327401 105327463 -16516393 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1388 228 273 0 0 chr11 105327498 105327630 -16516226 + (TG)n Simple_repeat Simple_repeat 1 132 0 8 1388 413 327 103 16 chr11 105327679 105327766 -16516090 - ID_B1 SINE B4 0 292 137 8 1388 370 286 95 0 chr11 105327766 105327871 -16515985 - PB1D9 SINE Alu -3 117 3 8 1388 413 327 103 16 chr11 105327871 105327944 -16515912 - ID_B1 SINE B4 0 136 2 8 1388 953 245 37 45 chr11 105327944 105328168 -16515688 - B4A SINE B4 -59 233 12 8 1388 25 0 0 0 chr11 105328487 105328512 -16515344 + GC_rich Low_complexity Low_complexity 1 25 0 8 1388 369 0 0 0 chr11 105329157 105329198 -16514658 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1388 1464 39 0 0 chr11 105329492 105329671 -16514185 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1388 321 118 0 0 chr11 105331574 105331625 -16512231 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1388 211 123 44 44 chr11 105331625 105331693 -16512163 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 1388 918 259 35 0 chr11 105331715 105331912 -16511944 - ID_B1 SINE B4 -12 212 9 8 1388 494 233 59 22 chr11 105331938 105332074 -16511782 + MER2 DNA MER2_type 87 227 -118 8 1388 476 298 113 0 chr11 105332077 105332201 -16511655 + B1F SINE Alu 1 138 -11 8 1388 401 307 47 61 chr11 105332201 105332479 -16511377 + B4 SINE B4 1 274 -18 8 1388 504 0 0 0 chr11 105332538 105332594 -16511262 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1388 325 306 106 16 chr11 105332755 105332878 -16510978 - MER5B DNA MER1_type -26 152 19 8 1388 1036 292 14 4 chr11 105332899 105333174 -16510682 + B4A SINE B4 1 278 -14 8 1388 239 258 0 31 chr11 105333188 105333252 -16510604 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1388 225 146 0 0 chr11 105333733 105333781 -16510075 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1388 605 231 85 137 chr11 105333800 105334106 -16509750 - B4 SINE B4 -2 290 1 8 1388 21 0 0 0 chr11 105334313 105334334 -16509522 + AT_rich Low_complexity Low_complexity 1 21 0 8 1388 207 0 0 0 chr11 105335874 105335897 -16507959 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1388 255 260 27 0 chr11 105335897 105335970 -16507886 - Charlie1a DNA MER1_type -45 1410 1336 8 1388 436 284 89 136 chr11 105335972 105336070 -16507786 + B4A SINE B4 1 94 -198 8 1388 715 156 88 7 chr11 105336070 105336206 -16507650 + B1_Mur2 SINE Alu 1 147 -2 8 1388 436 284 89 136 chr11 105336206 105336343 -16507513 + B4A SINE B4 95 225 -67 8 1388 14829 68 28 11 chr11 105336348 105337592 -16506264 + L1VL2 LINE L1 290 1562 -2053 8 1388 3044 26 3 0 chr11 105337592 105337937 -16505919 - ORR1A0 LTR MaLR 0 346 1 8 1388 14829 63 14 20 chr11 105337937 105339368 -16504488 + L1VL2 LINE L1 1563 2983 -632 8 1388 22 56 0 0 chr11 105339689 105339725 -16504131 + AT_rich Low_complexity Low_complexity 1 36 0 8 1388 1023 87 0 0 chr11 105340072 105340233 -16503623 + (GA)n Simple_repeat Simple_repeat 2 162 0 8 1388 472 244 17 9 chr11 105340239 105340355 -16503501 + PB1D10 SINE Alu 1 117 0 8 1388 944 217 141 11 chr11 105340358 105340719 -16503137 - Charlie1a DNA MER1_type -111 1344 937 8 1388 351 0 0 0 chr11 105340749 105340788 -16503068 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1388 450 295 76 35 chr11 105340792 105340936 -16502920 - RSINE1 SINE B4 -13 152 3 8 1388 464 221 125 8 chr11 105340945 105341073 -16502783 - B1F SINE Alu -5 144 2 8 1388 483 204 41 0 chr11 105341079 105341177 -16502679 - L1MC2 LINE L1 -134 6210 6109 8 1388 1256 239 54 12 chr11 105341186 105341517 -16502339 + MTE2a LTR MaLR 1 345 -34 8 1388 447 243 0 10 chr11 105341587 105341691 -16502165 + B4A SINE B4 186 288 -4 8 1388 552 180 0 0 chr11 105341701 105341823 -16502033 + (CA)n Simple_repeat Simple_repeat 1 122 0 8 1388 411 231 104 0 chr11 105342024 105342158 -16501698 - L1MC2 LINE L1 -795 5351 5204 8 1388 512 186 117 37 chr11 105342202 105342364 -16501492 - L1MC LINE L1 -796 5350 5176 8 1388 422 292 68 6 chr11 105342377 105342539 -16501317 - Charlie1a DNA MER1_type -1247 208 37 8 1388 195 42 0 0 chr11 105342891 105342915 -16500941 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 8 1388 396 197 17 25 chr11 105342918 105343038 -16500818 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 8 1388 733 244 133 12 chr11 105343084 105343325 -16500531 + L1MDa LINE L1 96 365 -6268 8 1388 575 316 18 0 chr11 105343325 105343481 -16500375 + MLT1A LTR MaLR 2 160 -214 8 1388 439 226 104 4 chr11 105343481 105343653 -16500203 + B3A SINE B2 1 199 -17 8 1388 414 355 36 51 chr11 105343692 105343888 -16499968 + MLT1A LTR MaLR 174 366 -8 8 1388 274 331 173 0 chr11 105343896 105344035 -16499821 + L1MDa LINE L1 363 525 -6108 8 1388 2092 273 136 28 chr11 105344134 105345119 -16498737 + L1MDa LINE L1 769 1859 -4774 8 1388 202 211 0 0 chr11 105345301 105345339 -16498517 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1388 276 288 0 14 chr11 105345345 105345427 -16498429 - B1F SINE Alu -56 93 13 8 1388 1062 258 57 57 chr11 105345470 105345873 -16497983 + L1MDa LINE L1 1855 2257 -4376 8 1388 21 0 0 0 chr11 105345891 105345912 -16497944 + AT_rich Low_complexity Low_complexity 1 21 0 8 1388 379 286 0 0 chr11 105345915 105346006 -16497850 - PB1D10 SINE Alu -15 102 12 8 1388 739 221 12 19 chr11 105346016 105346177 -16497679 - B3A SINE B2 -38 160 1 8 1388 231 324 27 81 chr11 105346178 105346326 -16497530 + L1MDa LINE L1 2256 2395 -4238 8 1388 271 219 0 0 chr11 105346347 105346411 -16497445 - Lx6 LINE L1 -26 7434 7371 8 1388 846 216 29 5 chr11 105346569 105346774 -16497082 + B3 SINE B2 1 210 -6 8 1388 1769 255 93 37 chr11 105346832 105347607 -16496249 + L1MDa LINE L1 3214 4031 -2506 8 1388 196 85 0 60 chr11 105347607 105347657 -16496199 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 1388 406 282 8 49 chr11 105347731 105347854 -16496002 - PB1D7 SINE Alu 0 120 3 8 1388 357 82 0 0 chr11 105347911 105347960 -16495896 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 8 1388 207 100 0 0 chr11 105347960 105347990 -16495866 + (GGA)n Simple_repeat Simple_repeat 1 30 0 8 1388 461 229 178 6 chr11 105348016 105348196 -16495660 + L1MDa LINE L1 5349 5559 -978 8 1388 720 221 193 0 chr11 105348215 105348396 -16495460 + B3 SINE B2 1 216 0 9 1388 800 188 28 0 chr11 105348404 105348548 -16495308 - B1_Mus1 SINE Alu 0 148 1 9 1388 1006 301 79 22 chr11 105348844 105349350 -16494506 + L1MDa LINE L1 5645 6179 -454 8 1388 934 233 37 14 chr11 105349393 105349611 -16494245 - ID_B1 SINE B4 0 224 2 9 1388 589 291 54 0 chr11 105349763 105349911 -16493945 + RSINE1 SINE B4 3 158 -7 9 1388 216 280 113 97 chr11 105349911 105349949 -16493907 + B2_Mm2 SINE B2 2 190 -5 9 1388 447 280 16 23 chr11 105350435 105350563 -16493293 + PB1 SINE Alu 1 127 0 9 1388 746 323 114 24 chr11 105350790 105351371 -16492485 - L1MC4 LINE L1 -329 7713 7081 9 1388 808 181 211 0 chr11 105351534 105351705 -16492151 - B3 SINE B2 -8 208 2 9 1388 802 140 0 101 chr11 105351720 105351879 -16491977 - B1_Mus1 SINE Alu -5 143 1 9 1388 193 304 0 14 chr11 105352859 105352929 -16490927 - L2 LINE L2 -650 2769 2701 9 1388 311 354 0 0 chr11 105353710 105353806 -16490050 + PB1D10 SINE Alu 1 96 -21 9 1388 1249 137 61 17 chr11 105353817 105354047 -16489809 + RMER1C Other Other 986 1225 -117 9 1388 671 172 8 0 chr11 105354047 105354181 -16489675 + CT-rich Low_complexity Low_complexity 1 135 0 9 1388 625 144 136 0 chr11 105354183 105354301 -16489555 + RMER1C Other Other 1201 1334 -8 9 1388 264 59 0 0 chr11 105354804 105354838 -16489018 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 9 1388 296 263 0 26 chr11 105354924 105355002 -16488854 + B1F SINE Alu 74 149 0 9 1388 883 111 7 56 chr11 105355028 105355171 -16488685 + B1_Mur3 SINE Alu 1 136 -13 9 1388 742 220 126 0 chr11 105355655 105355846 -16488010 + B3 SINE B2 2 216 0 9 1388 331 252 64 14 chr11 105359330 105359471 -16484385 - MIR3 SINE MIR -18 190 43 9 1388 490 275 79 0 chr11 105360404 105360582 -16483274 + MER96B DNA hAT 43 234 -183 9 1388 450 0 0 0 chr11 105360973 105361023 -16482833 + (TC)n Simple_repeat Simple_repeat 2 51 0 9 1388 307 216 40 0 chr11 105361024 105361098 -16482758 - B1F1 SINE Alu -72 77 1 9 1388 393 140 44 0 chr11 105362076 105362212 -16481644 + (CA)n Simple_repeat Simple_repeat 2 143 0 9 1388 258 247 0 0 chr11 105363275 105363352 -16480504 + (TG)n Simple_repeat Simple_repeat 1 77 0 9 1388 1073 242 76 25 chr11 105363358 105363634 -16480222 - B4 SINE B4 -2 290 1 9 1388 263 203 65 0 chr11 105363669 105363771 -16480085 - B3 SINE B2 -4 212 75 9 1388 536 29 14 0 chr11 105364285 105364355 -16479501 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 9 1388 813 131 0 0 chr11 105364361 105364491 -16479365 + (TCC)n Simple_repeat Simple_repeat 3 132 0 9 1388 203 281 0 0 chr11 105365218 105365275 -16478581 + T-rich Low_complexity Low_complexity 1 57 0 9 1388 524 166 4 50 chr11 105365274 105365556 -16478300 + (TG)n Simple_repeat Simple_repeat 1 268 0 9 1388 565 219 170 25 chr11 105365608 105365767 -16478089 - B3A SINE B2 -16 182 1 9 1388 702 276 47 0 chr11 105365774 105365988 -16477868 - ID_B1 SINE B4 0 224 1 9 1388 298 287 81 52 chr11 105366865 105367001 -16476855 - MIR3 SINE MIR -8 200 61 9 1388 454 328 29 12 chr11 105368091 105368264 -16475592 + MLT1F2 LTR MaLR 12 187 -373 9 1388 325 403 7 0 chr11 105368416 105368565 -16475291 + MLT1F2 LTR MaLR 386 535 -25 9 1388 216 0 0 0 chr11 105368988 105369012 -16474844 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 9 1388 324 0 0 0 chr11 105370823 105370859 -16472997 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1388 335 203 0 0 chr11 105370872 105370936 -16472920 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 9 1388 460 261 169 16 chr11 105372952 105373135 -16470721 - ID_B1 SINE B4 -13 211 1 9 1388 1065 300 84 91 chr11 105374027 105374365 -16469491 - Tigger9a DNA Tigger 0 732 381 9 1388 1005 258 82 11 chr11 105374365 105374632 -16469224 + B4 SINE B4 2 287 -5 9 1388 1065 300 84 91 chr11 105374632 105375018 -16468838 - Tigger9a DNA Tigger -352 380 13 9 1388 216 386 17 8 chr11 105375126 105375246 -16468610 - MIRb SINE MIR -138 130 10 9 1388 257 234 310 8 chr11 105375324 105375465 -16468391 - MIRb SINE MIR -42 226 37 9 1388 216 349 19 0 chr11 105375644 105375750 -16468106 + (CA)n Simple_repeat Simple_repeat 1 108 0 9 1388 22 56 0 0 chr11 105375844 105375880 -16467976 + AT_rich Low_complexity Low_complexity 1 36 0 9 1388 310 295 0 13 chr11 105376104 105376183 -16467673 + ID4_ SINE ID 5 82 -1 9 1388 180 111 0 0 chr11 105376183 105376210 -16467646 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 9 1388 634 272 33 42 chr11 105376216 105376431 -16467425 + L1MC4 LINE L1 5480 5692 -486 9 1388 639 326 33 48 chr11 105376530 105376605 -16467251 + L1ME2 LINE L1 5540 5608 -556 9 1388 867 194 0 0 chr11 105376605 105376744 -16467112 + B1_Mus2 SINE Alu 1 139 -8 9 1388 273 118 0 0 chr11 105376744 105376795 -16467061 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 9 1388 639 326 33 48 chr11 105376795 105377114 -16466742 + L1ME2 LINE L1 5609 5928 -236 9 1388 1429 173 82 128 chr11 105377114 105377552 -16466304 + MTD LTR MaLR 1 418 -1 9 1388 342 0 0 0 chr11 105377569 105377607 -16466249 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1388 227 217 97 42 chr11 105377697 105377769 -16466087 + L1ME2 LINE L1 6084 6159 -285 9 1388 250 248 52 15 chr11 105377784 105377916 -16465940 + L1MC4 LINE L1 6377 6514 -1528 9 1388 244 330 19 10 chr11 105377984 105378088 -16465768 + L1MC4 LINE L1 6712 6816 -1226 9 1388 228 62 0 0 chr11 105378254 105378260 -16465596 + (TC)n Simple_repeat Simple_repeat 2 7 0 9 1388 318 26 0 0 chr11 105378260 105378299 -16465557 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1388 228 62 0 0 chr11 105378299 105378324 -16465532 + (TC)n Simple_repeat Simple_repeat 1 25 0 9 1388 835 255 118 25 chr11 105378393 105378707 -16465149 + L1MC4 LINE L1 7207 7549 -493 9 1388 710 181 14 14 chr11 105378737 105378877 -16464979 - B1_Mur1 SINE Alu -1 148 9 9 1388 312 212 23 124 chr11 105378764 105378893 -16464963 - MT2B LTR ERVL -323 278 163 9 1388 473 311 32 59 chr11 105378951 105379204 -16464652 + L1MC4 LINE L1 7639 7884 -158 9 1388 247 246 14 0 chr11 105379345 105379414 -16464442 + L1MC4 LINE L1 7973 8042 0 9 1388 1505 293 37 13 chr11 105379450 105379596 -16464260 + LTR40a LTR ERVL 13 158 -361 9 1388 361 0 20 20 chr11 105379596 105379646 -16464210 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 9 1388 1505 293 37 13 chr11 105379646 105379963 -16463893 + LTR40a LTR ERVL 159 486 -33 9 1388 433 222 33 0 chr11 105380013 105380103 -16463753 + B4 SINE B4 2 94 -198 9 1388 891 171 7 0 chr11 105380122 105380268 -16463588 + B1_Mur1 SINE Alu 2 148 -1 9 1388 647 247 32 19 chr11 105380302 105380459 -16463397 + B4 SINE B4 111 269 -23 9 1388 450 0 0 0 chr11 105380459 105380509 -16463347 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1388 340 338 32 27 chr11 105380550 105380769 -16463087 - RMER15 LTR ERVL -13 562 343 9 1388 489 184 19 28 chr11 105381176 105381282 -16462574 - PB1D9 SINE Alu -1 119 15 9 1388 397 298 0 0 chr11 105381283 105381397 -16462459 - B1F1 SINE Alu -5 115 2 9 1388 509 283 71 66 chr11 105381465 105381662 -16462194 + RMER30 DNA MER1_type 2 199 -3 9 1389 262 256 23 58 chr11 105382029 105382116 -16461740 + RSINE1 SINE B4 82 165 0 9 1389 26 0 0 0 chr11 105382131 105382157 -16461699 + AT_rich Low_complexity Low_complexity 1 26 0 9 1389 259 325 47 8 chr11 105382220 105382347 -16461509 - ORR1E LTR MaLR -224 135 4 9 1389 378 113 5 0 chr11 105382383 105382449 -16461407 + B1_Mur4 SINE Alu 49 150 0 9 1389 645 207 59 0 chr11 105382602 105382737 -16461119 - B1_Mur1 SINE Alu -6 143 1 9 1389 706 245 6 13 chr11 105382986 105383143 -16460713 + RSINE1 SINE B4 3 158 -7 9 1389 286 158 0 50 chr11 105383329 105383389 -16460467 + ID_B1 SINE B4 87 143 -81 9 1389 1019 112 0 7 chr11 105383822 105384121 -16459735 + (CA)n Simple_repeat Simple_repeat 1 296 0 9 1389 191 36 36 0 chr11 105384193 105384221 -16459635 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 9 1389 270 0 0 0 chr11 105385216 105385246 -16458610 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 1389 789 175 166 21 chr11 105386514 105386701 -16457155 + B3 SINE B2 1 214 -2 9 1389 456 184 172 26 chr11 105387364 105387515 -16456341 - Lx8 LINE L1 -1 7472 7300 9 1389 1578 231 82 16 chr11 105387512 105387952 -16455904 - Lx8 LINE L1 -326 7147 6679 9 1389 541 262 21 14 chr11 105388252 105388395 -16455461 - B1F SINE Alu -1 148 5 9 1389 781 215 0 0 chr11 105388635 105388779 -16455077 + ID_B1 SINE B4 81 224 0 9 1389 208 179 0 25 chr11 105388952 105388992 -16454864 + (CATA)n Simple_repeat Simple_repeat 3 41 0 9 1389 505 122 37 0 chr11 105389199 105389281 -16454575 - ORR1B2 LTR MaLR -282 85 1 9 1389 477 134 37 0 chr11 105390020 105390102 -16453754 + ORR1B2 LTR MaLR 1 85 -282 9 1389 359 399 108 0 chr11 105390154 105390432 -16453424 + LTR16C LTR ERVL 69 376 -113 9 1389 356 317 8 8 chr11 105390545 105390666 -16453190 + ORR1E LTR MaLR 1 121 -238 9 1389 847 140 14 7 chr11 105390751 105390895 -16452961 + B1_Mur4 SINE Alu 6 150 0 9 1389 303 263 108 136 chr11 105390926 105391102 -16452754 + B3A SINE B2 28 198 0 9 1389 243 0 0 0 chr11 105391234 105391261 -16452595 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1389 231 295 26 0 chr11 105391333 105391411 -16452445 - ID4_ SINE ID -1 82 3 9 1389 396 0 0 0 chr11 105391736 105391780 -16452076 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1389 974 164 0 0 chr11 105392568 105392714 -16451142 + B1_Mus2 SINE Alu 2 147 0 9 1389 364 266 183 72 chr11 105392815 105393144 -16450712 + MLT1G3 LTR MaLR 113 435 -113 9 1389 314 365 120 26 chr11 105393415 105393724 -16450132 - L2 LINE L2 -343 3076 2739 9 1389 387 0 0 0 chr11 105394102 105394145 -16449711 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1389 2343 68 3 0 chr11 105394778 105395099 -16448757 + ORR1A2 LTR MaLR 6 327 0 9 1389 231 125 0 0 chr11 105395134 105395174 -16448682 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 9 1389 1023 261 17 28 chr11 105395185 105395476 -16448380 - B4 SINE B4 0 292 5 9 1389 409 235 108 0 chr11 105395483 105395585 -16448271 - PB1 SINE Alu -2 125 13 9 1389 505 274 22 7 chr11 105395774 105395910 -16447946 + MER58A DNA MER1_type 72 209 -15 9 1389 209 292 116 8 chr11 105395935 105396056 -16447800 + L2c LINE L2 3024 3157 -230 9 1389 918 267 132 21 chr11 105396148 105396527 -16447329 - Zaphod DNA Tip100 -15 4016 3596 9 1389 245 275 47 47 chr11 105396502 105396693 -16447163 - Zaphod DNA Tip100 -3021 1010 820 9 1389 1794 122 0 4 chr11 105396755 105397034 -16446822 - ORR1A1 LTR MaLR -68 278 1 1 1389 528 320 28 23 chr11 105397068 105397244 -16446612 + ID_B1 SINE B4 36 212 -12 1 1389 512 278 191 24 chr11 105397290 105397714 -16446142 - Zaphod DNA Tip100 -3240 791 297 9 1389 495 278 95 11 chr11 105398185 105398374 -16445482 - Zaphod DNA Tip100 -3739 292 88 9 1389 1332 256 39 20 chr11 105398452 105398810 -16445046 + ORR1D2 LTR MaLR 2 366 -4 1 1389 525 309 50 20 chr11 105399298 105399496 -16444360 - MLT1B LTR MaLR -6 384 181 1 1389 221 325 38 0 chr11 105399572 105399652 -16444204 - PB1D10 SINE Alu -11 106 24 1 1389 1372 202 117 3 chr11 105400208 105400525 -16443331 + MTD LTR MaLR 66 418 -1 1 1389 231 114 0 0 chr11 105400525 105400560 -16443296 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 1389 245 79 0 0 chr11 105400580 105400618 -16443238 + ORR1D2 LTR MaLR 332 369 -1 1 1389 273 167 0 0 chr11 105400618 105400672 -16443184 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1389 227 297 31 0 chr11 105400683 105400747 -16443109 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 1 1389 332 259 198 0 chr11 105400872 105400988 -16442868 + ID_B1 SINE B4 82 220 -4 1 1389 508 117 0 0 chr11 105401226 105401303 -16442553 - L1_Mus2 LINE L1 -623 5943 5867 1 1389 5071 57 9 11 chr11 105401303 105401947 -16441909 + L1_Mus2 LINE L1 5924 6566 0 1 1389 24 0 0 0 chr11 105403754 105403778 -16440078 + AT_rich Low_complexity Low_complexity 1 24 0 1 1389 270 81 0 0 chr11 105404029 105404066 -16439790 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1389 584 182 41 16 chr11 105404095 105404218 -16439638 - Lx7 LINE L1 -363 7333 7208 1 1389 1144 75 0 7 chr11 105404218 105404366 -16439490 + B1_Mus1 SINE Alu 2 148 0 1 1389 261 0 0 0 chr11 105404714 105404743 -16439113 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1 1389 342 0 0 0 chr11 105404830 105404868 -16438988 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1389 460 303 10 46 chr11 105404934 105405131 -16438725 - MLT1B LTR MaLR -6 384 195 1 1389 231 188 0 0 chr11 105405217 105405265 -16438591 + CT-rich Low_complexity Low_complexity 2 49 0 1 1389 244 317 97 14 chr11 105405314 105405458 -16438398 - MLT1B LTR MaLR -205 160 5 1 1389 359 349 0 0 chr11 105406399 105406508 -16437348 + PB1D10 SINE Alu 1 109 -8 1 1389 293 344 75 40 chr11 105406567 105406794 -16437062 + MIRb SINE MIR 34 268 0 1 1389 247 265 15 0 chr11 105407383 105407451 -16436405 - ID4 SINE ID -12 71 3 1 1389 471 311 13 32 chr11 105408091 105408247 -16435609 + RSINE1 SINE B4 2 154 -11 1 1389 195 292 15 0 chr11 105408968 105409033 -16434823 + MIRc SINE MIR 78 143 -125 1 1389 238 231 77 0 chr11 105409193 105409258 -16434598 + MamRep488 DNA hAT 71 140 -79 1 1389 474 304 99 71 chr11 105409471 105409754 -16434102 - B4A SINE B4 0 292 2 1 1389 708 272 14 10 chr11 105410069 105410277 -16433579 + MLT1C LTR MaLR 1 209 -258 1 1389 769 241 67 43 chr11 105410874 105411082 -16432774 + MER58A DNA MER1_type 3 215 -9 1 1389 981 252 118 128 chr11 105412682 105412983 -16430873 + Lx8 LINE L1 6955 7209 -264 1 1389 1230 90 0 0 chr11 105412983 105413161 -16430695 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1 1389 981 252 118 128 chr11 105413161 105413173 -16430683 + Lx8 LINE L1 7210 7221 -252 1 1389 1104 64 7 0 chr11 105413173 105413314 -16430542 - B1_Mus2 SINE Alu -5 142 1 1 1389 981 252 118 128 chr11 105413314 105413523 -16430333 + Lx8 LINE L1 7222 7473 0 1 1389 423 0 0 0 chr11 105414035 105414082 -16429774 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1389 427 298 134 16 chr11 105414550 105414744 -16429112 + MLT1I LTR MaLR 7 223 -188 1 1389 252 167 41 20 chr11 105414951 105415000 -16428856 + Lx6 LINE L1 6532 6581 -879 1 1389 1761 244 167 25 chr11 105415029 105415591 -16428265 + Lx6 LINE L1 6818 7459 -1 1 1389 453 263 55 55 chr11 105415624 105415708 -16428148 + B4 SINE B4 8 87 -205 1 1389 726 44 0 0 chr11 105415708 105415798 -16428058 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 1 1389 453 263 55 55 chr11 105415798 105415844 -16428012 + B4 SINE B4 88 141 -151 1 1389 495 0 0 0 chr11 105415844 105415899 -16427957 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1389 453 263 55 55 chr11 105415899 105415912 -16427944 + B4 SINE B4 142 152 -140 1 1389 417 281 57 7 chr11 105416129 105416269 -16427587 - MIRb SINE MIR -87 181 35 1 1389 1410 66 0 2 chr11 105416672 105417070 -16426786 + (TGGA)n Simple_repeat Simple_repeat 1 397 0 1 1389 286 318 0 0 chr11 105417406 105417491 -16426365 - MIRb SINE MIR -124 144 60 1 1389 725 311 92 23 chr11 105417507 105417942 -16425914 + MLT1C LTR MaLR 1 465 -2 1 1389 212 59 29 0 chr11 105418945 105418979 -16424877 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1389 24 0 0 0 chr11 105419469 105419493 -16424363 + AT_rich Low_complexity Low_complexity 1 24 0 1 1389 462 281 93 98 chr11 105419810 105420177 -16423679 - MLT1A0 LTR MaLR 0 365 1 1 1389 462 18 0 0 chr11 105420215 105420270 -16423586 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1389 532 284 82 54 chr11 105421298 105421577 -16422279 + L1MC5 LINE L1 6627 6913 -1048 1 1389 234 268 0 0 chr11 105421603 105421659 -16422197 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 1 1389 778 320 23 72 chr11 105421672 105421706 -16422150 - B4A SINE B4 0 292 267 1 1389 225 0 0 0 chr11 105421706 105421731 -16422125 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1389 778 320 23 72 chr11 105421731 105422002 -16421854 - B4A SINE B4 -26 266 2 1 1389 369 276 86 39 chr11 105422044 105422300 -16421556 + L1MC5 LINE L1 6959 7226 -735 1 1389 1182 187 89 45 chr11 105422320 105422633 -16421223 - ORR1D1 LTR MaLR -3 371 45 1 1389 731 136 155 28 chr11 105422650 105422831 -16421025 - ORR1D1-int LTR MaLR 0 1370 1167 1 1389 242 260 14 0 chr11 105422828 105422901 -16420955 - ORR1D1-int LTR MaLR -1292 78 5 1 1389 1074 221 5 9 chr11 105424113 105424323 -16419533 - B3 SINE B2 -7 209 1 1 1389 672 312 85 60 chr11 105424497 105425148 -16418708 - L1ME1 LINE L1 -28 6151 5452 1 1389 242 308 72 43 chr11 105425468 105425607 -16418249 - L1MEg LINE L1 -5903 181 39 1 1389 473 281 109 0 chr11 105425698 105425890 -16417966 + L1M4 LINE L1 4628 4840 -1306 1 1389 579 295 49 126 chr11 105425894 105426048 -16417808 + L1MEg LINE L1 1049 1209 -4875 1 1389 622 257 101 24 chr11 105426048 105426255 -16417601 - ID_B1 SINE B4 0 224 2 1 1389 579 295 49 126 chr11 105426255 105426655 -16417201 + L1MEg LINE L1 1210 1560 -4524 1 1389 396 309 110 6 chr11 105427066 105427229 -16416627 + B3A SINE B2 1 180 -18 1 1389 23 0 0 0 chr11 105427260 105427283 -16416573 + AT_rich Low_complexity Low_complexity 1 23 0 1 1389 267 110 0 5 chr11 105427782 105427833 -16416023 - B1F1 SINE Alu -100 50 1 1 1389 351 275 43 134 chr11 105429075 105429239 -16414617 + B4 SINE B4 75 223 -69 1 1389 748 194 7 14 chr11 105429103 105429244 -16414612 + B1_Mur4 SINE Alu 10 149 -1 1 1389 263 294 196 0 chr11 105429324 105429416 -16414440 - PB1D10 SINE Alu -5 112 3 1 1389 1112 284 10 21 chr11 105429451 105429742 -16414114 - B4A SINE B4 -4 288 1 1 1389 415 283 34 73 chr11 105429790 105429996 -16413860 + MIRb SINE MIR 39 236 -32 1 1389 988 187 50 18 chr11 105430200 105430418 -16413438 + URR1B DNA MER1_type 1 225 0 1 1389 512 246 0 17 chr11 105430437 105430553 -16413303 - PB1D10 SINE Alu -3 114 1 1 1389 240 268 54 0 chr11 105430583 105430639 -16413217 + PB1D7 SINE Alu 1 59 -61 1 1389 224 204 0 0 chr11 105430742 105430791 -16413065 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1389 204 299 87 25 chr11 105430924 105431085 -16412771 + L2c LINE L2 2430 2600 -819 1 1389 227 345 23 0 chr11 105431417 105431504 -16412352 + L2c LINE L2 3259 3347 -40 1 1389 229 256 105 24 chr11 105431522 105431646 -16412210 + Lx8 LINE L1 7340 7473 0 1 1389 976 223 40 0 chr11 105431780 105431982 -16411874 - B3 SINE B2 -6 210 1 1 1389 28 79 0 0 chr11 105431983 105432046 -16411810 + AT_rich Low_complexity Low_complexity 1 63 0 1 1389 235 325 70 0 chr11 105432079 105432193 -16411663 - L1MB7 LINE L1 -70 6114 5993 1 1389 273 340 111 21 chr11 105432203 105432347 -16411509 + MLT1D LTR MaLR 135 291 -336 1 1389 379 256 131 0 chr11 105432479 105432616 -16411240 + MLT1D LTR MaLR 348 502 -3 1 1389 814 258 75 34 chr11 105432923 105433188 -16410668 + MLT1A0 LTR MaLR 78 353 -12 1 1389 293 257 29 10 chr11 105433595 105433697 -16410159 + L1MB7 LINE L1 4252 4355 -1791 1 1389 180 0 0 0 chr11 105433697 105433717 -16410139 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1389 611 224 43 70 chr11 105433817 105434004 -16409852 - B3A SINE B2 -16 182 1 1 1389 749 239 6 12 chr11 105434059 105434220 -16409636 - RSINE1 SINE B4 -2 163 4 1 1389 379 242 10 10 chr11 105434221 105434321 -16409535 + L1MB7 LINE L1 5387 5486 -698 1 1389 524 224 99 50 chr11 105434338 105434530 -16409326 + B3A SINE B2 1 203 -13 1 1389 252 0 0 0 chr11 105434530 105434558 -16409298 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1389 660 294 65 49 chr11 105434577 105434875 -16408981 + L1MB7 LINE L1 5495 5808 -376 1 1389 301 268 71 10 chr11 105434875 105434973 -16408883 + PB1D10 SINE Alu 1 104 -13 1 1389 203 32 65 0 chr11 105434973 105435004 -16408852 + (CAAAC)n Simple_repeat Simple_repeat 1 33 0 1 1389 660 294 65 49 chr11 105435004 105435091 -16408765 + L1MB7 LINE L1 5809 5886 -298 1 1389 21 0 0 0 chr11 105435281 105435302 -16408554 + AT_rich Low_complexity Low_complexity 1 21 0 1 1389 209 30 0 57 chr11 105435402 105435437 -16408419 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1389 469 273 28 41 chr11 105436222 105436367 -16407489 - RSINE1 SINE B4 0 165 23 1 1389 306 132 0 0 chr11 105436550 105436603 -16407253 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1389 706 251 55 34 chr11 105436638 105436859 -16406997 - B3A SINE B2 -12 204 4 1 1389 995 159 137 10 chr11 105436946 105437143 -16406713 + URR1A DNA MER1_type 5 226 0 1 1389 209 211 0 0 chr11 105437273 105437311 -16406545 + CT-rich Low_complexity Low_complexity 4 41 0 1 1389 314 267 29 118 chr11 105437323 105437404 -16406452 - L1MC4 LINE L1 -133 7909 7838 1 1389 669 25 0 0 chr11 105437404 105437483 -16406373 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1389 832 179 15 0 chr11 105437483 105437617 -16406239 - B1_Mur1 SINE Alu -13 136 1 1 1389 314 267 29 118 chr11 105437617 105437704 -16406152 - L1MC4 LINE L1 -205 7837 7756 1 1389 245 286 14 0 chr11 105437787 105437857 -16405999 + G-rich Low_complexity Low_complexity 5 75 0 1 1389 419 212 58 39 chr11 105438229 105438332 -16405524 - PB1D10 SINE Alu 0 117 13 1 1389 401 222 178 0 chr11 105438406 105438496 -16405360 + PB1D7 SINE Alu 1 106 -14 1 1389 1804 191 32 30 chr11 105438556 105438919 -16404937 + MTD LTR MaLR 11 380 -39 1 1389 2481 124 18 10 chr11 105438919 105439310 -16404546 + ORR1B1 LTR MaLR 1 394 0 1 1389 1804 191 32 30 chr11 105439310 105439351 -16404505 + MTD LTR MaLR 381 416 -3 1 1389 235 275 157 48 chr11 105439357 105439586 -16404270 - L1M5 LINE L1 -1494 4652 4399 1 1389 237 281 9 64 chr11 105439966 105440076 -16403780 - PB1 SINE Alu -1 126 23 1 1389 384 325 108 41 chr11 105440579 105440874 -16402982 - Tigger15a DNA TcMar -399 316 2 1 1389 1310 102 0 5 chr11 105441537 105441725 -16402131 - B2_Mm2 SINE B2 -7 188 2 1 1389 3567 135 62 8 chr11 105441725 105442375 -16401481 - RMER6C LTR ERVK 0 690 6 1 1389 235 271 94 94 chr11 105443149 105443255 -16400601 + MLT1A1 LTR MaLR 23 128 -280 1 1389 932 169 12 18 chr11 105443796 105443965 -16399891 - ORR1B1 LTR MaLR -186 208 41 1 1389 468 109 129 11 chr11 105444008 105444101 -16399755 + Lx4A LINE L1 6955 7058 0 1 1389 21 0 0 0 chr11 105444101 105444122 -16399734 + AT_rich Low_complexity Low_complexity 1 21 0 1 1389 23 0 0 0 chr11 105445619 105445642 -16398214 + AT_rich Low_complexity Low_complexity 1 23 0 1 1389 1624 247 40 57 chr11 105446259 105446680 -16397176 + MTD LTR MaLR 6 419 0 1 1389 226 289 219 0 chr11 105446720 105446848 -16397008 + MIRb SINE MIR 105 260 -8 1 1389 3263 148 131 9 chr11 105447072 105447378 -16396478 + RMER6D LTR ERVK 1 335 -385 1 1389 518 43 14 0 chr11 105447378 105447447 -16396409 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1389 275 0 0 28 chr11 105447449 105447485 -16396371 + (TGG)n Simple_repeat Simple_repeat 1 35 0 1 1389 3263 148 131 9 chr11 105447485 105447817 -16396039 + RMER6D LTR ERVK 336 713 -7 1 1389 216 0 0 0 chr11 105448386 105448410 -16395446 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1389 965 26 0 0 chr11 105448410 105448527 -16395329 - B1_Mus2 SINE Alu -9 138 22 1 1389 1986 71 25 56 chr11 105448527 105448887 -16394969 + RMER17A LTR ERVK 104 452 -299 1 1389 26 30 0 0 chr11 105448918 105448951 -16394905 + AT_rich Low_complexity Low_complexity 1 33 0 1 1389 607 254 14 0 chr11 105448960 105449102 -16394754 + Charlie22a DNA MER1_type 342 485 -6 1 1389 277 335 148 37 chr11 105449287 105449476 -16394380 - MIRb SINE MIR -22 246 37 1 1389 26 64 0 0 chr11 105449832 105449879 -16393977 + AT_rich Low_complexity Low_complexity 1 47 0 1 1389 26 0 0 0 chr11 105450935 105450961 -16392895 + GC_rich Low_complexity Low_complexity 1 26 0 1 1389 33 125 0 0 chr11 105451020 105451284 -16392572 + GC_rich Low_complexity Low_complexity 1 264 0 1 1389 198 0 0 0 chr11 105452140 105452162 -16391694 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1389 229 216 0 0 chr11 105452370 105452421 -16391435 + A-rich Low_complexity Low_complexity 1 51 0 1 1389 325 286 189 14 chr11 105453719 105453936 -16389920 - MIR SINE MIR -15 253 2 1 1389 226 170 21 21 chr11 105453983 105454031 -16389825 + RLTR46 LTR ERVK 60 107 -213 1 1389 281 286 71 9 chr11 105454886 105454999 -16388857 - PB1D9 SINE Alu 0 120 1 1 1389 1213 91 20 51 chr11 105456334 105456530 -16387326 + B2_Mm2 SINE B2 2 191 -4 1 1389 320 0 0 24 chr11 105456854 105456895 -16386961 + (GTGTG)n Simple_repeat Simple_repeat 1 40 0 1 1389 772 272 87 26 chr11 105456925 105457189 -16386667 - B4A SINE B4 -12 280 1 1 1389 617 202 62 0 chr11 105457749 105457878 -16385978 + B1_Mur1 SINE Alu 2 138 -11 1 1389 669 243 463 17 chr11 105458070 105458305 -16385551 + MER58B DNA MER1_type 2 341 0 1 1389 889 121 23 0 chr11 105458503 105458635 -16385221 - B1_Mur4 SINE Alu -11 139 5 1 1389 183 80 0 0 chr11 105458693 105458718 -16385138 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1389 364 200 278 0 chr11 105458738 105458853 -16385003 + B1_Mur1 SINE Alu 1 147 -2 1 1389 390 298 0 9 chr11 105458939 105459044 -16384812 - RMER12 LTR ERVK -452 870 767 1 1389 212 0 36 0 chr11 105459223 105459251 -16384605 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1389 530 177 224 26 chr11 105459251 105459367 -16384489 - B1_Mur3 SINE Alu -10 139 1 1 1389 817 287 54 18 chr11 105459616 105459896 -16383960 - B4A SINE B4 0 292 3 1 1389 1181 60 0 0 chr11 105460393 105460542 -16383314 - B2_Mm2 SINE B2 -45 150 2 1 1389 1201 124 5 16 chr11 105460690 105460879 -16382977 - B2_Mm2 SINE B2 -8 187 1 1 1389 382 303 83 41 chr11 105460992 105461118 -16382738 + PB1D10 SINE Alu 1 129 -20 1 1389 266 308 25 37 chr11 105461146 105461227 -16382629 + MIRb SINE MIR 13 92 -176 1 1389 2121 164 88 7 chr11 105461264 105461695 -16382161 + RMER4A LTR ERVK 1 466 0 1 1389 264 148 86 69 chr11 105462078 105462136 -16381720 + ID4_ SINE ID 7 65 -18 1 1389 782 226 28 34 chr11 105462247 105462426 -16381430 + ID_B1 SINE B4 5 182 -42 1 1389 389 260 14 16 chr11 105463020 105463167 -16380689 + L1M5 LINE L1 3675 3824 -2322 1 1389 1360 261 61 31 chr11 105463538 105463929 -16379927 - MTD LTR MaLR -14 405 3 1 1389 271 211 19 0 chr11 105463970 105464022 -16379834 - ID_B1 SINE B4 -3 221 169 1 1389 259 244 75 25 chr11 105464022 105464050 -16379806 - PB1D10 SINE Alu -1 116 33 1 1389 270 237 0 17 chr11 105464040 105464100 -16379756 - ID SINE ID -165 59 1 1 1389 228 354 257 29 chr11 105464123 105464819 -16379037 + L2 LINE L2 1072 1926 -1493 1 1389 263 348 36 7 chr11 105464827 105464966 -16378890 - L1ME1 LINE L1 -52 6127 5985 1 1389 1230 256 59 10 chr11 105464978 105465262 -16378594 + RCHARR1 DNA MER1_type 10 307 -667 1 1389 1766 236 132 80 chr11 105465262 105465838 -16378018 + RMER20B LTR ERVK 1 606 -21 1 1389 2130 215 74 34 chr11 105465844 105466082 -16377774 + RCHARR1 DNA MER1_type 305 555 -419 1 1389 1978 133 128 19 chr11 105466082 105466449 -16377407 - MTB_Mm LTR MaLR 0 407 1 1 1389 2130 215 74 34 chr11 105466449 105466832 -16377024 + RCHARR1 DNA MER1_type 556 951 -23 1 1389 1079 135 191 0 chr11 105466832 105467192 -16376664 + Lx3C LINE L1 6548 6976 0 1 1389 926 189 78 78 chr11 105467212 105467544 -16376312 - L1ME1 LINE L1 -199 5980 5649 1 1389 390 281 8 24 chr11 105467559 105467683 -16376173 - L1ME1 LINE L1 -1172 4974 4853 1 1389 270 338 89 7 chr11 105468104 105468250 -16375606 + L2 LINE L2 1932 2089 -1330 1 1389 1797 142 169 8 chr11 105468251 105468607 -16375249 + MTC LTR MaLR 1 413 -8 1 1389 194 245 0 36 chr11 105468698 105468753 -16375103 + L2 LINE L2 2182 2234 -1185 1 1389 624 331 69 58 chr11 105468748 105469008 -16374848 + L2 LINE L2 452 714 -2705 1 1389 778 152 0 0 chr11 105469106 105469224 -16374632 - B1_Mur3 SINE Alu -5 144 27 1 1389 718 354 57 101 chr11 105469293 105469858 -16373998 - MER77 LTR ERVL -4 603 64 1 1389 1246 40 0 0 chr11 105470004 105470152 -16373704 - B1_Mus1 SINE Alu 0 148 1 1 1389 949 329 74 59 chr11 105470209 105470343 -16373513 + L2 LINE L2 919 1053 -2366 1 1389 2827 40 6 0 chr11 105470343 105470691 -16373165 - L1Md_F2 LINE L1 0 6582 6233 1 1389 949 329 74 59 chr11 105470691 105470828 -16373028 + L2 LINE L2 1054 1182 -2237 1 1389 231 333 12 0 chr11 105470828 105470909 -16372947 - ID4_ SINE ID 0 83 2 1 1389 949 329 74 59 chr11 105470909 105471230 -16372626 + L2 LINE L2 1183 1521 -1898 1 1389 852 193 14 7 chr11 105471356 105471502 -16372354 + B1_Mus2 SINE Alu 1 147 0 1 1389 217 0 29 29 chr11 105471506 105471540 -16372316 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1389 306 244 109 22 chr11 105471611 105471703 -16372153 + L2 LINE L2 1758 1857 -1562 1 1389 1007 39 8 0 chr11 105471862 105471989 -16371867 + B1_Mus2 SINE Alu 20 147 0 1 1389 2518 134 43 5 chr11 105472255 105472653 -16371203 - MTC LTR MaLR -8 413 1 1 1389 423 259 56 7 chr11 105472834 105472978 -16370878 - LTR41 LTR ERVL 0 768 618 1 1389 981 309 215 17 chr11 105472993 105473458 -16370398 - LTR41 LTR ERVL -195 573 17 1 1389 385 302 115 14 chr11 105473761 105473969 -16369887 - L1MC4a LINE L1 -1843 6039 5811 1 1389 241 246 0 32 chr11 105474086 105474149 -16369707 + B1F SINE Alu 1 61 -88 1 1389 279 71 0 0 chr11 105474150 105474192 -16369664 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1389 204 40 0 0 chr11 105474325 105474350 -16369506 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1 1389 344 103 0 0 chr11 105474353 105474411 -16369445 - L1Md_F2 LINE L1 -10 6572 6515 1 1389 4035 50 0 0 chr11 105474457 105474975 -16368881 + L1Md_F2 LINE L1 5069 5586 -297 1 1389 8235 42 3 0 chr11 105474975 105475968 -16367888 + L1Md_F2 LINE L1 5587 6582 0 1 1389 272 276 92 0 chr11 105475970 105476057 -16367799 + B1F SINE Alu 53 147 -2 1 1389 230 267 150 0 chr11 105476075 105476135 -16367721 + ID4_ SINE ID 1 69 -14 1 1389 455 191 34 0 chr11 105476336 105476425 -16367431 - B3 SINE B2 -30 186 95 1 1389 442 173 49 0 chr11 105477303 105477384 -16366472 + B3 SINE B2 131 215 -1 1 1389 446 316 108 19 chr11 105477913 105478126 -16365730 - MLT1J LTR MaLR -4 508 277 1 1389 268 314 127 13 chr11 105478369 105478527 -16365329 - MIRb SINE MIR -76 192 17 1 1389 22 0 0 0 chr11 105479071 105479093 -16364763 + AT_rich Low_complexity Low_complexity 1 22 0 1 1389 8684 97 19 3 chr11 105479094 105480690 -16363166 - Lx3A LINE L1 -4 6977 5352 1 1389 816 107 0 0 chr11 105480688 105480819 -16363037 + Lx3A LINE L1 5211 5341 -545 1 1389 189 0 0 0 chr11 105482360 105482381 -16361475 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1389 304 208 62 0 chr11 105482392 105482488 -16361368 - Lx9 LINE L1 0 7644 7543 1 1389 251 259 266 41 chr11 105482749 105482968 -16360888 - B4A SINE B4 -22 270 3 1 1389 519 343 38 49 chr11 105483023 105483207 -16360649 - LTR16A1 LTR ERVL -194 262 81 1 1389 341 120 267 0 chr11 105483310 105483385 -16360471 - PB1D9 SINE Alu -9 111 17 1 1389 297 251 110 47 chr11 105483444 105483508 -16360348 - L1ME2z LINE L1 -141 6303 6240 1 1389 1123 70 7 0 chr11 105483508 105483651 -16360205 + B1_Mm SINE Alu 2 145 -2 1 1389 207 0 0 0 chr11 105483651 105483674 -16360182 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1389 297 251 110 47 chr11 105483674 105483863 -16359993 - L1ME2z LINE L1 -205 6239 6034 1 1389 475 327 13 13 chr11 105484266 105484424 -16359432 - RSINE1 SINE B4 -4 161 4 1 1389 552 324 128 25 chr11 105484525 105484924 -16358932 - L1MEg LINE L1 -4740 1344 905 1 1389 914 55 150 0 chr11 105485158 105485285 -16358571 - B1_Mus2 SINE Alu 0 147 2 1 1389 292 179 224 0 chr11 105485919 105485986 -16357870 + RLTR20A2 LTR ERVK 202 283 -285 1 1389 634 234 27 19 chr11 105485971 105486135 -16357721 + RLTR20A2 LTR ERVK 342 562 -16 1 1389 402 296 22 29 chr11 105486838 105486977 -16356879 + B1F1 SINE Alu 6 143 -6 1 1389 236 338 169 14 chr11 105487406 105487613 -16356243 - MER21B LTR ERV1 -111 752 514 1 1389 283 284 0 29 chr11 105487728 105487797 -16356059 - ID4_ SINE ID -15 68 2 1 1389 246 272 203 67 chr11 105488597 105488897 -16354959 + L2a LINE L2 2936 3322 -104 1 1389 407 203 201 37 chr11 105488908 105489030 -16354826 - B1_Mur1 SINE Alu 0 148 10 1 1389 1251 48 0 0 chr11 105489155 105489302 -16354554 - B1_Mus1 SINE Alu 0 148 2 1 1389 290 79 0 20 chr11 105489312 105489376 -16354480 - Lx2 LINE L1 0 6997 6940 1 1389 285 29 0 0 chr11 105489377 105489411 -16354445 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1389 467 248 18 0 chr11 105489441 105489550 -16354306 + PB1 SINE Alu 5 115 -12 1 1389 287 345 11 43 chr11 105490293 105490387 -16353469 - B1F1 SINE Alu -58 91 1 1 1389 212 325 0 59 chr11 105490322 105490407 -16353449 - B4 SINE B4 -147 145 66 1 1389 833 179 14 0 chr11 105490961 105491101 -16352755 + B1_Mur2 SINE Alu 1 142 -7 1 1389 22 35 0 0 chr11 105491142 105491171 -16352685 + AT_rich Low_complexity Low_complexity 1 29 0 1 1389 1188 68 0 0 chr11 105491287 105491433 -16352423 - B1_Mus1 SINE Alu -2 146 1 1 1389 25 31 0 0 chr11 105491538 105491570 -16352286 + AT_rich Low_complexity Low_complexity 1 32 0 1 1389 263 374 33 11 chr11 105491578 105491593 -16352263 - PB1D7 SINE Alu -26 94 1 1 1389 309 316 0 13 chr11 105491593 105491670 -16352186 - ID_B1 SINE B4 -67 157 82 1 1389 279 244 0 0 chr11 105491826 105491890 -16351966 - ID_B1 SINE B4 -76 148 89 1 1389 198 0 0 0 chr11 105492643 105492665 -16351191 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1389 264 91 0 0 chr11 105492665 105492708 -16351148 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1389 1163 287 62 43 chr11 105492733 105493155 -16350701 - MER34 LTR ERV1 -110 432 3 1 1389 1517 132 21 0 chr11 105493491 105493726 -16350130 - Lx3A LINE L1 -2 6979 6740 1 1389 325 281 57 19 chr11 105493742 105493847 -16350009 - B1F SINE Alu -29 120 12 1 1389 251 169 51 0 chr11 105494250 105494309 -16349547 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 1 1389 1119 74 0 7 chr11 105494344 105494493 -16349363 - B1_Mus1 SINE Alu 0 148 1 1 1389 444 265 128 72 chr11 105494539 105494643 -16349213 + L1M2 LINE L1 3880 4006 -2134 1 1389 261 0 0 0 chr11 105494643 105494672 -16349184 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1389 444 265 128 72 chr11 105494672 105494810 -16349046 + L1M2 LINE L1 4007 4164 -1976 1 1389 498 227 113 8 chr11 105494810 105494943 -16348913 + B1F SINE Alu 1 147 -2 1 1389 444 265 128 72 chr11 105494943 105495114 -16348742 + L1M2 LINE L1 4165 4316 -1824 1 1389 234 91 0 0 chr11 105495121 105495154 -16348702 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1389 1181 61 0 0 chr11 105495154 105495302 -16348554 - B1_Mus1 SINE Alu 0 148 1 1 1389 489 248 0 0 chr11 105495361 105495498 -16348358 + L1M2 LINE L1 5149 5285 -858 1 1389 765 219 25 31 chr11 105495612 105495772 -16348084 + ID_B1 SINE B4 63 221 -3 1 1389 189 135 19 37 chr11 105495939 105495993 -16347863 + CT-rich Low_complexity Low_complexity 4 56 0 1 1389 543 223 47 61 chr11 105496102 105496250 -16347606 + B3 SINE B2 3 148 -68 1 1389 1950 127 277 44 chr11 105496404 105496833 -16347023 + RLTR24 LTR ERV1 1 529 0 1 1389 338 292 138 58 chr11 105496883 105497021 -16346835 - B1F SINE Alu 0 149 1 1 1389 1119 62 14 0 chr11 105497237 105497382 -16346474 - B1_Mm SINE Alu 0 147 1 1 1389 1218 139 33 0 chr11 105497890 105498105 -16345751 + URR1B DNA MER1_type 1 222 -3 1 1389 6878 58 1 1 chr11 105498231 105500000 -16343856 + L1Md_F LINE L1 418 2186 -3697 1 1389 25955 68 1 2 chr11 105500000 105503402 -16340454 + L1Md_F2 LINE L1 2187 5586 -297 1 1389 8399 31 1 0 chr11 105503402 105504397 -16339459 + L1Md_F2 LINE L1 5587 6582 0 1 1389 180 188 80 40 chr11 105504413 105504463 -16339393 + L3b LINE CR1 312 363 -119 2 1389 519 345 50 50 chr11 105504873 105505196 -16338660 - MLT1L LTR MaLR -245 365 43 3 1389 564 212 194 56 chr11 105505410 105505570 -16338286 + B3A SINE B2 1 182 -16 4 1389 738 351 67 32 chr11 105507844 105508129 -16335727 - MER21B LTR ERV1 -550 313 19 5 1389 571 293 66 22 chr11 105508624 105508896 -16334960 - L1MD2 LINE L1 -363 5996 5713 6 1389 848 249 27 5 chr11 105508938 105509124 -16334732 - B3A SINE B2 -1 197 8 7 1389 354 245 130 72 chr11 105509130 105509360 -16334496 - L1MD2 LINE L1 -509 5670 5428 6 1389 248 191 22 5 chr11 105509365 105509422 -16334434 - B1F SINE Alu -11 138 62 8 1389 2041 294 163 26 chr11 105510088 105510264 -16333592 - L1MD2 LINE L1 -750 5396 5203 6 1389 1138 69 7 0 chr11 105510264 105510409 -16333447 - B1_Mm SINE Alu -1 146 1 9 1389 2041 294 163 26 chr11 105510409 105510494 -16333362 - L1MD2 LINE L1 -944 5202 5086 6 1389 287 291 12 12 chr11 105510494 105510574 -16333282 + ID4_ SINE ID 1 80 -3 1 1389 2041 294 163 26 chr11 105510574 105510648 -16333208 - L1MD2 LINE L1 -1061 5085 5021 6 1389 757 194 7 46 chr11 105510648 105510799 -16333057 - B1_Mur1 SINE Alu -4 145 1 1 1389 5299 260 109 21 chr11 105510799 105511948 -16331908 - L1MD2 LINE L1 -1126 5020 3650 6 1389 552 95 0 0 chr11 105511948 105512032 -16331824 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 173 5299 243 83 18 chr11 105512032 105513014 -16330842 - L1MD2 LINE L1 -2198 3649 2584 6 1390 216 0 0 0 chr11 105513014 105513038 -16330818 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1390 5299 243 83 18 chr11 105513038 105513070 -16330786 - L1MD2 LINE L1 -3264 2583 2552 6 1390 1316 86 21 0 chr11 105513085 105513271 -16330585 - B2_Mm1t SINE B2 -2 191 2 1 1390 459 0 0 0 chr11 105513378 105513429 -16330427 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1390 405 0 0 0 chr11 105513531 105513576 -16330280 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1390 394 286 84 98 chr11 105514011 105514241 -16329615 - L1MD LINE L1 -1842 4304 4093 1 1390 1994 59 123 7 chr11 105514241 105514533 -16329323 - L1_Mus2 LINE L1 0 6566 6241 1 1390 394 286 84 98 chr11 105514533 105514732 -16329124 - L1MD LINE L1 -2054 4092 3881 1 1390 1633 165 69 137 chr11 105514766 105514821 -16329035 - ORR1B1 LTR MaLR 0 394 353 1 1390 1230 94 66 0 chr11 105514821 105515002 -16328854 - B2_Mm1t SINE B2 0 193 1 2 1390 1633 165 69 137 chr11 105515002 105515354 -16328502 - ORR1B1 LTR MaLR -42 352 15 1 1390 1662 121 234 12 chr11 105515509 105515843 -16328013 + MTC LTR MaLR 1 408 -13 2 1390 448 244 102 11 chr11 105515844 105516030 -16327826 - L1MD LINE L1 -2430 3716 3514 1 1390 337 288 26 80 chr11 105516162 105516313 -16327543 + MIR3 SINE MIR 65 207 -1 2 1390 25 0 0 0 chr11 105516496 105516521 -16327335 + AT_rich Low_complexity Low_complexity 1 25 0 2 1390 207 0 0 0 chr11 105517248 105517271 -16326585 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1390 3163 34 0 0 chr11 105519252 105519631 -16324225 - L1Md_A LINE L1 -1 6581 6203 2 1390 217 48 23 45 chr11 105519861 105519905 -16323951 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 2 1390 808 147 88 0 chr11 105519905 105520041 -16323815 - B1_Mur3 SINE Alu 0 149 2 2 1390 5957 95 20 3 chr11 105520845 105521703 -16322153 - Lx3_Mus LINE L1 -3 7006 6135 2 1390 417 335 23 63 chr11 105521949 105522124 -16321732 - MTEa LTR MaLR -201 178 11 2 1390 601 181 289 9 chr11 105522945 105523163 -16320693 + L1MC3 LINE L1 7335 7613 -172 3 1390 876 262 177 0 chr11 105523272 105523691 -16320165 - L1MA7 LINE L1 -238 6053 5561 3 1390 692 232 117 20 chr11 105523880 105524244 -16319612 - L1M3e LINE L1 -3792 3308 2904 3 1390 626 221 20 77 chr11 105524487 105524683 -16319173 - B2_Mm2 SINE B2 -9 186 2 3 1390 461 238 105 35 chr11 105524787 105524987 -16318869 - L1M3e LINE L1 -4199 2908 2695 3 1390 264 239 59 15 chr11 105525043 105525111 -16318745 + PB1D10 SINE Alu 45 115 -2 3 1390 720 315 163 17 chr11 105525183 105525512 -16318344 - L1M3e LINE L1 -4514 2593 2188 3 1390 276 287 102 25 chr11 105525512 105525630 -16318226 - PB1 SINE Alu 0 127 1 3 1390 1068 266 66 58 chr11 105525630 105526151 -16317705 - L1M3e LINE L1 -4850 2187 1657 3 1390 550 331 120 23 chr11 105526296 105526605 -16317251 + L1MD2 LINE L1 60 398 -6149 3 1390 374 341 74 17 chr11 105526719 105526949 -16316907 + L1MD2 LINE L1 681 923 -5624 3 1390 432 174 86 54 chr11 105526978 105527164 -16316692 + Lx3B LINE L1 6823 6970 -3 3 1390 186 133 0 0 chr11 105527164 105527194 -16316662 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 3 1390 1163 75 0 0 chr11 105527391 105527537 -16316319 + B1_Mus2 SINE Alu 2 147 0 3 1390 316 264 179 62 chr11 105527559 105527997 -16315859 + L1MD2 LINE L1 1211 1734 -4906 3 1390 399 339 41 36 chr11 105528316 105528543 -16315313 - B4A SINE B4 -10 282 1 4 1390 719 201 46 80 chr11 105528707 105528858 -16314998 + B1_Mus2 SINE Alu 2 147 0 4 1390 1914 311 109 41 chr11 105528998 105529927 -16313929 - Lx8 LINE L1 -2 7471 6480 4 1390 526 185 153 40 chr11 105530034 105530158 -16313698 - B1_Mus2 SINE Alu -1 146 9 4 1390 3274 55 148 4 chr11 105530461 105530915 -16312941 - MURVY-LTR LTR ERV1 0 519 1 4 1390 13321 78 18 1 chr11 105531131 105533634 -16310222 + L1_Mus1 LINE L1 4022 6567 0 4 1390 303 339 81 48 chr11 105533823 105533947 -16309909 - B1F SINE Alu -19 130 3 4 1390 292 314 69 76 chr11 105533831 105533962 -16309894 - ID_B1 SINE B4 -25 199 70 4 1390 222 37 0 0 chr11 105534070 105534097 -16309759 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 4 1390 21 0 0 0 chr11 105534280 105534301 -16309555 + AT_rich Low_complexity Low_complexity 1 21 0 4 1390 211 254 51 0 chr11 105535077 105535136 -16308720 + CT-rich Low_complexity Low_complexity 1 62 0 5 1390 682 216 163 0 chr11 105535136 105535326 -16308530 - ID_B1 SINE B4 -2 222 2 5 1390 265 96 19 0 chr11 105535489 105535541 -16308315 - Lx9 LINE L1 -1 7643 7591 5 1390 198 0 0 0 chr11 105535550 105535572 -16308284 + (TC)n Simple_repeat Simple_repeat 2 23 0 5 1390 297 0 0 0 chr11 105535572 105535604 -16308252 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1390 4862 190 52 61 chr11 105535607 105536692 -16307164 - Lx9 LINE L1 -193 7451 6377 5 1390 2949 206 37 3 chr11 105536684 105537313 -16306543 - Lx9 LINE L1 -6320 1288 639 5 1390 1147 172 44 0 chr11 105537315 105537518 -16306338 - ORR1C1 LTR MaLR 0 378 167 5 1390 332 200 0 12 chr11 105537518 105537599 -16306257 + GA-rich Low_complexity Low_complexity 1 80 0 5 1390 501 0 43 0 chr11 105537622 105537691 -16306165 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1390 348 64 0 0 chr11 105537691 105537738 -16306118 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1390 1075 147 8 0 chr11 105537738 105537926 -16305930 - ORR1C1 LTR MaLR -178 192 1 5 1390 260 271 271 0 chr11 105537926 105538033 -16305823 - Lx9 LINE L1 -6967 641 506 5 1390 768 146 30 15 chr11 105538272 105538404 -16305452 + B1_Mur3 SINE Alu 5 138 -11 5 1390 215 245 38 0 chr11 105538407 105538460 -16305396 + GA-rich Low_complexity Low_complexity 6 60 0 6 1390 495 0 0 0 chr11 105538633 105538688 -16305168 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1390 1533 148 213 10 chr11 105538704 105539018 -16304838 - RLTR14 LTR ERV1 -2 380 3 6 1390 585 76 0 0 chr11 105539147 105539226 -16304630 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 1390 3429 111 124 14 chr11 105539680 105540509 -16303347 - RLTR13D3 LTR ERVK 0 1114 1 6 1390 242 343 94 9 chr11 105540736 105540842 -16303014 + HAL1 LINE L1 633 747 -1760 6 1390 423 286 0 9 chr11 105541013 105541119 -16302737 - PB1D10 SINE Alu -1 116 12 6 1390 495 305 138 37 chr11 105541140 105541684 -16302172 + HAL1 LINE L1 975 1573 -934 6 1390 405 262 84 0 chr11 105541745 105541852 -16302004 - PB1D10 SINE Alu -1 116 1 6 1390 1672 149 158 61 chr11 105541938 105542330 -16301526 - RLTR23 LTR ERV1 0 430 1 6 1390 2743 198 138 50 chr11 105542466 105543285 -16300571 - RMER19B LTR ERVK -11 891 1 6 1390 1229 258 7 21 chr11 105543389 105543670 -16300186 - MTEb LTR MaLR -100 279 3 7 1390 436 240 97 53 chr11 105543764 105543971 -16299885 - L1MD LINE L1 -3436 2710 2495 7 1390 580 223 0 35 chr11 105544121 105544237 -16299619 - RSINE1 SINE B4 -52 113 2 7 1390 687 237 46 7 chr11 105544809 105544962 -16298894 - B3 SINE B2 0 216 58 7 1390 449 227 24 63 chr11 105545038 105545165 -16298691 - B1F2 SINE Alu -1 148 27 7 1390 377 308 7 58 chr11 105545042 105545180 -16298676 - ID_B1 SINE B4 0 224 94 7 1390 22 35 0 0 chr11 105545233 105545262 -16298594 + AT_rich Low_complexity Low_complexity 1 29 0 7 1390 437 316 74 43 chr11 105546588 105546939 -16296917 - ERVL-E-int LTR ERVL -1628 4129 3768 7 1390 3820 179 103 59 chr11 105546984 105547835 -16296021 + RMER19B LTR ERVK 1 889 -13 7 1390 1058 31 47 0 chr11 105547872 105548001 -16295855 + B1_Mus1 SINE Alu 2 136 -12 7 1390 486 0 0 0 chr11 105548002 105548056 -16295800 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1390 257 266 0 45 chr11 105548136 105548203 -16295653 - ERVL-E-int LTR ERVL -2157 3557 3494 7 1390 472 316 107 15 chr11 105548481 105548677 -16295179 - ERVL-E-int LTR ERVL -2953 2714 2501 7 1390 377 309 85 52 chr11 105548691 105548903 -16294953 - ERVL-E-int LTR ERVL -3196 2561 2343 7 1390 216 0 0 0 chr11 105549109 105549133 -16294723 + (TTA)n Simple_repeat Simple_repeat 2 25 0 8 1390 297 306 62 0 chr11 105549133 105549277 -16294579 - L1MEf LINE L1 -5426 774 622 8 1390 1073 170 8 122 chr11 105549620 105549751 -16294105 + URR1B DNA MER1_type 1 129 -96 8 1390 1135 62 14 0 chr11 105549751 105549896 -16293960 + B1_Mus2 SINE Alu 1 147 0 8 1390 1073 170 8 122 chr11 105549896 105550018 -16293838 + URR1B DNA MER1_type 130 225 0 8 1390 3386 166 60 5 chr11 105550177 105550806 -16293050 - Lx3C LINE L1 -4 6972 6309 8 1390 3764 124 80 37 chr11 105550806 105551796 -16292060 + Lx3C LINE L1 5194 6245 -731 8 1390 198 0 0 0 chr11 105551866 105551888 -16291968 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 8 1390 895 187 0 0 chr11 105552289 105552428 -16291428 + B1_Mur4 SINE Alu 2 140 -10 8 1390 195 114 0 0 chr11 105552465 105552500 -16291356 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 8 1390 243 294 93 28 chr11 105552754 105552936 -16290920 - L1MC LINE L1 -1337 4809 4616 8 1390 497 165 165 0 chr11 105552942 105553057 -16290799 + B1_Mus1 SINE Alu 2 135 -13 9 1390 390 42 0 0 chr11 105553058 105553106 -16290750 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1390 1198 70 6 0 chr11 105553150 105553308 -16290548 + B2_Mm1t SINE B2 2 160 -33 9 1390 387 0 0 0 chr11 105553308 105553351 -16290505 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 9 1390 1218 54 0 0 chr11 105553371 105553518 -16290338 + B1_Mm SINE Alu 1 147 0 9 1390 357 185 130 0 chr11 105553571 105553663 -16290193 - L1M5 LINE L1 -1566 4580 4477 9 1390 529 279 56 104 chr11 105553677 105553965 -16289891 + ORR1E LTR MaLR 42 315 -44 9 1390 1358 297 64 33 chr11 105553983 105554470 -16289386 + MTE-int LTR MaLR 1 502 -1078 9 1390 8412 99 21 1 chr11 105554481 105555705 -16288151 - L1_Mm LINE L1 -418 5465 4217 9 1390 2008 290 114 32 chr11 105555885 105556958 -16286898 - L1M2 LINE L1 -493 6089 4897 9 1390 1151 63 0 0 chr11 105556958 105557100 -16286756 + B1_Mus1 SINE Alu 2 143 -5 1 1390 792 59 0 0 chr11 105557102 105557204 -16286652 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 1 1390 2008 288 112 32 chr11 105557204 105557672 -16286184 - L1M2 LINE L1 -1916 4929 4434 9 1390 252 0 0 0 chr11 105557672 105557700 -16286156 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1390 488 285 7 37 chr11 105557837 105557972 -16285884 - B1F SINE Alu -14 135 5 1 1390 255 282 39 0 chr11 105557974 105558052 -16285804 - L1M2 LINE L1 -2470 4372 4292 9 1390 315 104 0 0 chr11 105558061 105558109 -16285747 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1390 1209 55 0 0 chr11 105558110 105558256 -16285600 - B1_Mus2 SINE Alu 0 147 2 1 1390 238 241 74 25 chr11 105558266 105558347 -16285509 - L1M2 LINE L1 -2583 4259 4175 9 1390 473 297 66 43 chr11 105558486 105559018 -16284838 - L1M2 LINE L1 -2877 3968 3425 9 1390 1599 292 20 18 chr11 105559099 105559548 -16284308 + Lx8 LINE L1 6308 6757 -716 1 1390 261 0 0 0 chr11 105559568 105559597 -16284259 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1390 537 196 0 0 chr11 105559627 105559719 -16284137 - B1_Mur3 SINE Alu -56 93 2 1 1390 648 308 83 8 chr11 105559725 105559977 -16283879 + Lx8 LINE L1 6796 7066 -407 1 1390 390 284 88 60 chr11 105559983 105560481 -16283375 - L1M2 LINE L1 -4089 2493 2020 9 1390 751 220 0 0 chr11 105560515 105560656 -16283200 + B1_Mur3 SINE Alu 1 141 -8 1 1390 317 198 22 55 chr11 105561286 105561377 -16282479 + RMER12 LTR ERVK 1235 1322 0 1 1390 976 272 103 18 chr11 105563302 105563841 -16280015 - L1MB5 LINE L1 -85 6093 5491 1 1390 712 266 0 0 chr11 105564055 105564183 -16279673 - RSINE1 SINE B4 -34 131 4 1 1390 614 223 82 14 chr11 105564201 105564495 -16279361 - L1MB5 LINE L1 -682 5498 5186 1 1390 430 98 98 0 chr11 105564505 105564587 -16279269 - Lx3_Mus LINE L1 -8 7001 6912 1 1390 9072 50 2 0 chr11 105565006 105566853 -16277003 - L1Md_F2 LINE L1 0 6582 4732 1 1390 37881 43 1 3 chr11 105566853 105573154 -16270702 - L1Md_T LINE L1 0 6585 199 1 1390 3774 63 2 2 chr11 105573153 105573647 -16270209 - L1Md_F2 LINE L1 -1137 4746 4253 1 1390 349 300 113 7 chr11 105573661 105573802 -16270054 - RSINE1 SINE B4 -6 159 4 1 1390 434 204 0 9 chr11 105574044 105574153 -16269703 + CT-rich Low_complexity Low_complexity 1 108 0 1 1390 249 303 26 13 chr11 105574171 105574248 -16269608 - ID4_ SINE ID -2 81 4 1 1390 284 145 48 12 chr11 105574462 105574546 -16269310 + CT-rich Low_complexity Low_complexity 1 87 0 1 1390 363 60 0 0 chr11 105574588 105574638 -16269218 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1390 1321 73 34 0 chr11 105576976 105577155 -16266701 + B2_Mm1a SINE B2 1 185 -8 1 1390 22 0 0 0 chr11 105577303 105577325 -16266531 + AT_rich Low_complexity Low_complexity 1 22 0 1 1390 307 269 117 22 chr11 105577540 105577677 -16266179 - L2a LINE L2 -2 3424 3275 1 1390 430 191 90 0 chr11 105577696 105577785 -16266071 + B1_Mur2 SINE Alu 43 139 -10 1 1390 546 278 0 0 chr11 105578200 105578308 -16265548 - RSINE1 SINE B4 -55 110 3 1 1390 225 0 0 0 chr11 105578457 105578482 -16265374 + (TTAG)n Simple_repeat Simple_repeat 1 25 0 1 1390 353 295 167 18 chr11 105578817 105578931 -16264925 + B1F SINE Alu 1 131 -18 1 1390 271 241 0 151 chr11 105579053 105579146 -16264710 - MIR SINE MIR -114 148 70 1 1390 234 254 36 0 chr11 105579143 105579198 -16264658 - MIRm SINE MIR -120 156 100 1 1390 446 308 38 15 chr11 105580744 105580876 -16262980 - B1F SINE Alu -13 136 2 1 1390 448 238 131 42 chr11 105581165 105581402 -16262454 + L1MB7 LINE L1 5698 5955 -229 1 1390 665 233 133 42 chr11 105581397 105581706 -16262150 + L1MB7 LINE L1 5847 6183 -1 1 1390 4090 73 17 0 chr11 105581764 105582296 -16261560 - L1_Mus1 LINE L1 0 6567 6027 1 1390 2650 44 61 0 chr11 105582296 105582639 -16261217 + L1Md_F2 LINE L1 5679 6042 -540 1 1390 222 351 32 0 chr11 105583540 105583634 -16260222 - MIR SINE MIR -4 258 162 1 1390 220 400 15 37 chr11 105583726 105583861 -16259995 - L3 LINE CR1 -217 4272 4141 1 1390 454 267 0 0 chr11 105583960 105584061 -16259795 + PB1D10 SINE Alu 3 103 -14 1 1390 217 286 0 18 chr11 105584331 105584388 -16259468 - PB1D10 SINE Alu -7 110 55 1 1390 6205 131 37 4 chr11 105584388 105585399 -16258457 + L1_Mur2 LINE L1 4098 5141 -736 1 1390 1421 123 361 0 chr11 105585393 105585703 -16258153 + Lx2B LINE L1 6574 6995 -5 1 1390 25 31 0 0 chr11 105586067 105586099 -16257757 + AT_rich Low_complexity Low_complexity 1 32 0 1 1390 241 246 118 44 chr11 105586167 105586235 -16257621 - ID4_ SINE ID -9 74 2 1 1390 212 261 61 102 chr11 105586584 105586682 -16257174 - MIRb SINE MIR -144 124 31 1 1390 578 57 0 11 chr11 105586961 105587050 -16256806 - L1_Mus2 LINE L1 -2 6564 6477 1 1390 580 179 226 26 chr11 105587432 105587587 -16256269 + B2_Mm2 SINE B2 1 186 -9 1 1390 27 49 0 0 chr11 105587928 105587969 -16255887 + AT_rich Low_complexity Low_complexity 1 41 0 1 1390 1987 123 26 0 chr11 105590001 105590311 -16253545 + Lx2 LINE L1 6674 6991 -6 1 1390 234 177 0 48 chr11 105591421 105591504 -16252352 + CT-rich Low_complexity Low_complexity 4 82 0 1 1390 200 35 35 0 chr11 105591537 105591566 -16252290 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1390 224 360 57 59 chr11 105591683 105591900 -16251956 - MIRc SINE MIR -60 208 1 1 1390 22 35 0 0 chr11 105594991 105595020 -16248836 + AT_rich Low_complexity Low_complexity 1 29 0 1 1390 303 28 0 0 chr11 105595785 105595821 -16248035 + (TGG)n Simple_repeat Simple_repeat 2 37 0 1 1390 338 265 132 93 chr11 105595843 105595972 -16247884 + ID_B1 SINE B4 91 224 0 1 1390 561 254 0 0 chr11 105595981 105596091 -16247765 + PB1D10 SINE Alu 1 110 -7 1 1390 680 290 61 9 chr11 105596273 105596485 -16247371 + ID_B1 SINE B4 2 224 0 1 1390 2935 56 5 15 chr11 105596951 105597348 -16246508 - L1Md_F2 LINE L1 -11 6571 6179 1 1390 442 210 128 24 chr11 105597602 105597746 -16246110 + MIR SINE MIR 61 228 -40 1 1390 476 261 193 6 chr11 105598059 105598240 -16245616 - B3 SINE B2 0 216 2 1 1390 23591 140 42 15 chr11 105598325 105600582 -16243274 - Lx LINE L1 0 6654 4382 1 1390 324 0 0 0 chr11 105600582 105600618 -16243238 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1390 1181 48 0 0 chr11 105600618 105600763 -16243093 - B1_Mus1 SINE Alu -3 145 1 1 1390 23591 136 58 12 chr11 105600763 105604168 -16239688 - Lx LINE L1 -1502 4381 749 1 1390 258 300 0 48 chr11 105604214 105604298 -16239558 + MIR SINE MIR 102 181 -81 1 1390 1253 143 0 23 chr11 105605165 105605386 -16238470 - Lx2 LINE L1 0 6997 6782 1 1390 214 353 10 10 chr11 105605675 105605778 -16238078 - BC1_Mm scRNA scRNA -49 103 1 1 1390 1027 241 74 49 chr11 105605831 105606198 -16237658 - MTEa LTR MaLR -3 376 1 1 1390 284 338 34 58 chr11 105606379 105606586 -16237270 + Tigger13a DNA MER2_type 162 363 -408 1 1390 566 234 263 0 chr11 105606660 105606831 -16237025 - B3 SINE B2 0 216 1 1 1390 279 254 153 27 chr11 105606875 105607025 -16236831 + Tigger13a DNA MER2_type 540 708 -63 1 1390 939 95 6 35 chr11 105607206 105607380 -16236476 - Lx LINE L1 0 6654 6486 1 1390 238 167 194 15 chr11 105607784 105607851 -16236005 - B1F1 SINE Alu -70 79 1 1 1390 396 274 159 0 chr11 105608683 105608840 -16235016 - L1MA6 LINE L1 -6 6294 6113 1 1390 201 250 0 0 chr11 105608874 105608934 -16234922 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 1 1390 969 265 29 18 chr11 105608950 105609223 -16234633 - B4A SINE B4 -16 276 1 1 1390 299 306 13 11 chr11 105610561 105610649 -16233207 + ID_B1 SINE B4 28 119 -173 1 1390 298 270 0 51 chr11 105611023 105611101 -16232755 + PB1D10 SINE Alu 21 94 -23 1 1390 1179 175 87 9 chr11 105612270 105612489 -16231367 - ORR1B2 LTR MaLR -15 352 117 1 1390 611 232 8 8 chr11 105612488 105612595 -16231261 + MTE-int LTR MaLR 1421 1527 -53 1 1390 444 317 140 0 chr11 105612595 105612759 -16231097 + ORR1D2 LTR MaLR 1 187 -183 1 1390 1118 81 0 0 chr11 105612782 105612930 -16230926 - B1_Mus1 SINE Alu 0 148 1 1 1390 466 183 81 34 chr11 105612935 105613036 -16230820 - Lx4B LINE L1 0 7058 6937 1 1390 189 0 0 0 chr11 105613036 105613057 -16230799 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1390 414 0 0 0 chr11 105613057 105613102 -16230754 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1390 466 204 227 68 chr11 105613102 105613177 -16230679 - Lx4B LINE L1 -111 6947 6871 1 1390 1862 273 46 4 chr11 105613177 105613659 -16230197 - MTE-int LTR MaLR -136 1444 943 1 1390 340 336 32 32 chr11 105613663 105613786 -16230070 + ORR1E LTR MaLR 1 123 -236 1 1390 263 272 228 0 chr11 105613791 105613883 -16229973 - B4 SINE B4 -179 113 1 1 1390 709 241 101 11 chr11 105613909 105614098 -16229758 - B3 SINE B2 -10 206 1 1 1390 755 291 24 0 chr11 105614162 105614327 -16229529 - B3 SINE B2 -47 169 1 1 1390 401 267 59 25 chr11 105614360 105614479 -16229377 + B3A SINE B2 11 133 -65 1 1390 396 0 0 0 chr11 105614483 105614527 -16229329 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1390 215 167 42 0 chr11 105614530 105614578 -16229278 + GA-rich Low_complexity Low_complexity 4 53 0 1 1390 264 252 227 0 chr11 105614744 105614863 -16228993 - MER113 DNA MER1_type -287 234 89 1 1390 237 328 57 25 chr11 105615055 105615177 -16228679 - MLT1J2 LTR MaLR -320 128 3 1 1390 1119 131 17 0 chr11 105615541 105615716 -16228140 + B2_Mm1t SINE B2 2 179 -14 1 1390 345 142 12 34 chr11 105615800 105615866 -16227990 + B2_Mm2 SINE B2 46 115 -83 1 1390 558 0 0 0 chr11 105615876 105615938 -16227918 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 1390 475 311 73 36 chr11 105616297 105616434 -16227422 - ID_B1 SINE B4 0 224 83 1 1390 1045 96 7 0 chr11 105616857 105617003 -16226853 + B1_Mm SINE Alu 1 147 0 1 1390 327 146 0 0 chr11 105617003 105617058 -16226798 + (A)n Simple_repeat Simple_repeat 1 55 0 1 1390 7714 83 9 9 chr11 105617148 105618327 -16225529 - L1_Mus3 LINE L1 0 6638 5458 1 1390 365 323 121 0 chr11 105618429 105618553 -16225303 + B1F2 SINE Alu 1 139 -10 1 1390 247 254 16 33 chr11 105619169 105619230 -16224626 + B4 SINE B4 2 61 -231 2 1390 192 262 0 28 chr11 105620127 105620233 -16223623 + CT-rich Low_complexity Low_complexity 5 107 0 2 1390 214 357 0 0 chr11 105621562 105621632 -16222224 + CT-rich Low_complexity Low_complexity 3 72 0 2 1390 548 326 179 61 chr11 105622275 105622801 -16221055 + LTR48B LTR ERV1 57 644 0 2 1390 619 264 31 31 chr11 105623008 105623168 -16220688 - MER5A DNA MER1_type -26 163 4 2 1390 4745 151 37 72 chr11 105623886 105624349 -16219507 - Lx4A LINE L1 0 7050 6578 2 1390 293 152 86 57 chr11 105624349 105624419 -16219437 + RLTR25B LTR ERVK 438 509 -519 2 1390 773 68 0 0 chr11 105624359 105624462 -16219394 + B1_Mm SINE Alu 45 147 0 2 1390 4745 151 37 72 chr11 105624462 105625226 -16218630 - Lx4A LINE L1 0 6577 5796 2 1390 689 176 34 34 chr11 105625230 105625377 -16218479 - B1_Mus1 SINE Alu -1 147 1 2 1390 305 100 0 57 chr11 105625523 105625576 -16218280 + MIRc SINE MIR 95 144 -124 2 1390 3183 129 29 17 chr11 105625578 105626097 -16217759 - Lx2 LINE L1 -305 6692 6168 2 1390 1602 128 89 34 chr11 105626091 105626383 -16217473 + Lx2 LINE L1 6690 6997 0 2 1390 354 45 0 0 chr11 105626623 105626667 -16217189 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1390 898 94 8 30 chr11 105626667 105626798 -16217058 - B1_Mus1 SINE Alu -19 129 2 2 1390 29 0 0 0 chr11 105626920 105626949 -16216907 + AT_rich Low_complexity Low_complexity 1 29 0 2 1390 439 291 33 33 chr11 105627361 105627482 -16216374 + B1F SINE Alu 22 142 -7 2 1390 2188 217 11 65 chr11 105628359 105628823 -16215033 + Lx5 LINE L1 6607 7045 -5 2 1390 235 356 57 36 chr11 105629441 105629581 -16214275 + L2b LINE L2 3233 3375 0 2 1390 38 0 0 0 chr11 105629581 105629619 -16214237 + AT_rich Low_complexity Low_complexity 1 38 0 2 1390 233 292 41 16 chr11 105629775 105629897 -16213959 + L1MC4a LINE L1 7710 7834 -48 2 1390 1047 289 94 26 chr11 105629906 105630364 -16213492 - L1MB7 LINE L1 -17 6167 5679 2 1390 552 327 36 0 chr11 105630648 105630816 -16213040 + MIR SINE MIR 2 175 -87 2 1390 601 184 26 0 chr11 105630833 105630947 -16212909 + PB1D10 SINE Alu 1 117 0 2 1390 3848 48 0 2 chr11 105631178 105631654 -16212202 - L1Md_F2 LINE L1 -12 6570 6096 2 1390 187 143 0 58 chr11 105633173 105633225 -16210631 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 1390 585 308 76 4 chr11 105633253 105633491 -16210365 + L1MC4 LINE L1 6801 7055 -987 2 1390 1148 224 116 27 chr11 105633612 105633984 -16209872 + L1MB4 LINE L1 5682 6086 -94 2 1390 495 0 0 0 chr11 105633984 105634039 -16209817 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1390 453 225 350 19 chr11 105634123 105634386 -16209470 + L1MC4 LINE L1 7263 7612 -430 2 1390 257 229 111 28 chr11 105635791 105635899 -16207957 + RLTR13D5 LTR ERVK 202 318 -705 2 1390 878 255 71 42 chr11 105637681 105637964 -16205892 + B4 SINE B4 2 292 0 2 1390 227 285 165 49 chr11 105638524 105638790 -16205066 + L1M5 LINE L1 2655 2951 -3195 2 1390 435 176 39 31 chr11 105638798 105638903 -16204953 + MTD LTR MaLR 266 415 -4 2 1390 238 191 43 0 chr11 105638977 105639024 -16204832 - BC1_Mm scRNA scRNA -91 61 13 2 1390 334 278 12 53 chr11 105639295 105639407 -16204449 + BC1_Mm scRNA scRNA 1 109 -43 2 1390 29 28 0 0 chr11 105639790 105639826 -16204030 + AT_rich Low_complexity Low_complexity 1 36 0 2 1390 3410 87 0 4 chr11 105640463 105640925 -16202931 - L1_Mus1 LINE L1 -1 6566 6107 2 1390 30 45 0 0 chr11 105641451 105641495 -16202361 + AT_rich Low_complexity Low_complexity 1 44 0 2 1390 2380 84 21 31 chr11 105642230 105642612 -16201244 - L1_Mus3 LINE L1 0 6638 6261 2 1390 23 68 0 0 chr11 105642631 105642675 -16201181 + AT_rich Low_complexity Low_complexity 1 44 0 2 1390 21 0 0 0 chr11 105642727 105642748 -16201108 + AT_rich Low_complexity Low_complexity 1 21 0 2 1390 294 213 108 28 chr11 105643191 105643288 -16200568 + B4 SINE B4 2 103 -189 2 173 4677 155 63 28 chr11 105643288 105644177 -16199679 + L1VL1 LINE L1 209 1128 -5294 2 1391 25919 129 24 13 chr11 105644164 105647875 -16195981 + L1_Mus3 LINE L1 1546 5306 -577 2 1391 3436 30 2 0 chr11 105647875 105648270 -16195586 - MTA_Mm LTR MaLR 0 396 1 2 1391 25919 129 24 13 chr11 105648270 105648630 -16195226 + L1_Mus3 LINE L1 5307 5674 -209 2 1391 2757 42 0 3 chr11 105648630 105648966 -16194890 - L1_Mus1 LINE L1 0 6567 6233 2 1391 25919 87 11 16 chr11 105648966 105649923 -16193933 + L1_Mus3 LINE L1 5675 6631 -7 2 1391 559 269 19 55 chr11 105649923 105650105 -16193751 + B4 SINE B4 81 250 -42 2 1391 357 331 43 37 chr11 105650104 105650267 -16193589 + B4A SINE B4 62 225 -67 2 1391 286 194 134 0 chr11 105650270 105650371 -16193485 + L1MA4 LINE L1 4948 5057 -1086 2 1391 435 319 66 13 chr11 105650375 105650702 -16193154 + L1MA4 LINE L1 5542 5890 -401 2 1391 771 149 67 0 chr11 105650760 105650894 -16192962 + B1_Mus2 SINE Alu 5 147 0 2 1391 1169 55 7 0 chr11 105651048 105651194 -16192662 - B1_Mus2 SINE Alu 0 147 1 2 1391 4099 50 2 2 chr11 105651338 105651844 -16192012 + L1_Mus1 LINE L1 6062 6567 0 2 1391 24 0 0 0 chr11 105651844 105651868 -16191988 + AT_rich Low_complexity Low_complexity 1 24 0 2 1391 268 324 92 9 chr11 105651894 105652003 -16191853 + MER46C DNA MER2_type 95 212 -126 2 1391 585 277 254 0 chr11 105652703 105652923 -16190933 + B4A SINE B4 5 280 -12 2 1391 26 0 0 0 chr11 105652974 105653000 -16190856 + AT_rich Low_complexity Low_complexity 1 26 0 2 1391 387 0 0 0 chr11 105653070 105653113 -16190743 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1391 1139 101 0 0 chr11 105653114 105653272 -16190584 - B2_Mm2 SINE B2 -37 158 1 2 1391 24 32 0 0 chr11 105653419 105653450 -16190406 + AT_rich Low_complexity Low_complexity 1 31 0 2 1391 2338 175 114 139 chr11 105654044 105654779 -16189077 + RMER6D LTR ERVK 4 720 0 2 1391 924 34 17 0 chr11 105655417 105655535 -16188321 - MTB_Mm LTR MaLR -287 120 1 2 1391 525 268 36 65 chr11 105655558 105655726 -16188130 + RSINE1 SINE B4 3 165 0 2 1391 637 239 97 72 chr11 105655824 105656103 -16187753 + L1M5 LINE L1 5319 5604 -575 2 1391 608 233 62 0 chr11 105656114 105656243 -16187613 - ID_B1 SINE B4 0 224 88 2 1391 333 138 0 4 chr11 105656241 105656309 -16187547 + PB1D7 SINE Alu 51 113 -37 2 1391 627 271 49 38 chr11 105656500 105656765 -16187091 + L1_Rod LINE L1 5505 5772 -75 2 1391 24 0 0 0 chr11 105657007 105657031 -16186825 + AT_rich Low_complexity Low_complexity 1 24 0 2 1391 945 42 0 0 chr11 105657031 105657151 -16186705 - B1_Mm SINE Alu 0 147 28 2 1391 589 262 47 70 chr11 105657668 105657840 -16186016 - B3 SINE B2 -4 212 45 2 1391 441 0 0 0 chr11 105659432 105659481 -16184375 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1391 22 0 0 0 chr11 105660180 105660202 -16183654 + AT_rich Low_complexity Low_complexity 1 22 0 2 1391 312 329 0 0 chr11 105660356 105660438 -16183418 + ID4 SINE ID 2 83 0 2 1391 2414 68 91 6 chr11 105661054 105661393 -16182463 - L1_Mus1 LINE L1 0 6567 6200 2 1391 387 351 22 29 chr11 105661394 105661532 -16182324 + B1F1 SINE Alu 13 149 0 2 1391 294 300 77 19 chr11 105661751 105661915 -16181941 + LTR40b LTR ERVL 246 430 -35 2 1391 722 289 96 29 chr11 105662140 105662715 -16181141 - L1M4 LINE L1 -428 5756 5141 2 1391 391 286 126 0 chr11 105663029 105663148 -16180708 + RSINE1 SINE B4 3 136 -29 2 1391 5002 35 2 2 chr11 105663649 105664251 -16179605 - L1Md_F2 LINE L1 -1 6581 5980 2 1391 695 229 36 0 chr11 105664390 105664530 -16179326 + B1_Mus2 SINE Alu 3 147 0 2 1391 220 290 97 29 chr11 105664999 105665102 -16178754 + PB1D10 SINE Alu 3 112 -5 2 1391 407 272 95 17 chr11 105665183 105665299 -16178557 + ID_B1 SINE B4 100 224 0 2 1391 1213 41 0 20 chr11 105665482 105665632 -16178224 + B1_Mus2 SINE Alu 1 147 0 2 1391 901 81 0 20 chr11 105665883 105666035 -16177821 + RMER17B LTR ERVK 312 460 -498 2 1391 1647 187 79 8 chr11 105667026 105667393 -16176463 + Lx2B LINE L1 6607 6999 -1 2 1391 422 254 123 11 chr11 105667776 105667955 -16175901 - L2a LINE L2 -18 3408 3210 2 1391 496 282 24 24 chr11 105668185 105668312 -16175544 + ID_B1 SINE B4 69 195 -29 2 1391 749 257 201 49 chr11 105668568 105669162 -16174694 - L1M2 LINE L1 -1153 4990 4307 2 1391 305 169 100 17 chr11 105669173 105669233 -16174623 + B1_Mur1 SINE Alu 85 149 0 2 1391 1535 180 197 14 chr11 105669542 105669746 -16174110 - MTD LTR MaLR 0 419 167 2 1391 234 0 0 0 chr11 105669746 105669772 -16174084 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1391 1535 180 197 14 chr11 105669772 105669917 -16173939 - MTD LTR MaLR -253 166 8 2 1391 2496 214 52 4 chr11 105669982 105670550 -16173306 - Lx6 LINE L1 -581 6879 6301 2 1391 3909 88 32 6 chr11 105670842 105671380 -16172476 - L1_Mus4 LINE L1 0 6636 6085 2 1391 23 0 0 0 chr11 105671720 105671743 -16172113 + AT_rich Low_complexity Low_complexity 1 23 0 2 1391 1343 236 78 11 chr11 105672332 105672680 -16171176 - MTEb LTR MaLR -4 375 5 2 1391 232 290 0 80 chr11 105673213 105673288 -16170568 + B3 SINE B2 2 70 -146 2 1391 450 232 94 10 chr11 105673223 105673319 -16170537 + RSINE1 SINE B4 8 111 -54 2 1391 30666 68 14 1 chr11 105674301 105679264 -16164592 + L1Md_F LINE L1 358 5383 -500 2 1391 2978 65 0 0 chr11 105679263 105679676 -16164180 + L1_Mm LINE L1 3615 4027 -1856 2 1391 1517 97 18 0 chr11 105679672 105679873 -16163983 + L1Md_F LINE L1 5386 5586 -297 2 1391 7089 81 25 28 chr11 105679873 105680872 -16162984 + L1Md_F2 LINE L1 5587 6582 0 2 1391 1517 97 18 0 chr11 105680872 105680896 -16162960 + L1Md_F LINE L1 5587 5614 -269 2 1391 730 250 13 0 chr11 105681132 105681288 -16162568 + RSINE1 SINE B4 2 159 -6 2 1391 843 216 0 72 chr11 105681424 105681619 -16162237 - B3A SINE B2 -15 183 3 2 1391 6294 107 59 8 chr11 105681820 105682799 -16161057 + Lx LINE L1 5609 6637 -17 2 1391 264 30 0 0 chr11 105682799 105682832 -16161024 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1391 757 234 43 34 chr11 105682967 105683175 -16160681 + B3 SINE B2 2 211 -5 3 1391 412 307 53 30 chr11 105683233 105683364 -16160492 - Charlie1 DNA MER1_type -2628 153 20 3 1391 1053 73 0 0 chr11 105683940 105684076 -16159780 - B1_Mus1 SINE Alu -1 147 12 3 1391 21 57 0 0 chr11 105685136 105685171 -16158685 + AT_rich Low_complexity Low_complexity 1 35 0 3 1391 574 296 14 0 chr11 105685183 105685325 -16158531 - RSINE1 SINE B4 -21 144 1 3 1391 237 241 0 53 chr11 105686090 105686147 -16157709 + ZP3AR Satellite Satellite 36 89 -123 3 1391 357 206 93 33 chr11 105686099 105686217 -16157639 + ID_B1 SINE B4 1 175 -49 3 1391 407 262 68 15 chr11 105686529 105686661 -16157195 - B1F1 SINE Alu -10 139 1 3 1391 184 345 0 0 chr11 105686698 105686753 -16157103 - L2 LINE L2 -1044 2375 2321 3 1391 204 316 94 0 chr11 105687305 105687422 -16156434 - MIR SINE MIR -128 134 7 3 1391 241 337 155 66 chr11 105687689 105687717 -16156139 - B3A SINE B2 0 198 2 3 1391 632 293 59 20 chr11 105687717 105687870 -16155986 - RSINE1 SINE B4 -4 161 3 3 1391 366 296 9 44 chr11 105688044 105688157 -16155699 + PB1D10 SINE Alu 7 115 -2 3 1391 529 274 37 37 chr11 105688835 105688998 -16154858 - RSINE1 SINE B4 0 165 3 3 1391 536 221 40 16 chr11 105689778 105689902 -16153954 - B1F2 SINE Alu -20 129 3 3 1391 361 262 37 0 chr11 105690139 105690246 -16153610 - B4A SINE B4 -181 111 1 3 1391 272 316 50 17 chr11 105691019 105691138 -16152718 + PB1 SINE Alu 1 123 -4 3 1391 267 240 29 29 chr11 105691332 105691435 -16152421 + L1M4 LINE L1 1137 1239 -5303 3 1391 21 36 0 0 chr11 105691672 105691700 -16152156 + AT_rich Low_complexity Low_complexity 1 28 0 3 1391 278 311 148 45 chr11 105692049 105692251 -16151605 - L2b LINE L2 0 3426 3204 3 1391 310 394 26 8 chr11 105692304 105692485 -16151371 - L2b LINE L2 -223 3203 3014 3 1391 449 286 312 29 chr11 105693831 105694057 -16149799 - B4A SINE B4 0 292 3 3 1391 21 82 0 0 chr11 105694162 105694211 -16149645 + AT_rich Low_complexity Low_complexity 1 49 0 3 1391 620 250 100 35 chr11 105694587 105694757 -16149099 + B3A SINE B2 2 182 -16 3 1391 253 345 112 74 chr11 105695311 105695495 -16148361 - MamRep38 DNA hAT -2 293 106 3 1391 3123 67 52 5 chr11 105695495 105695916 -16147940 - L1Md_F2 LINE L1 -10 6572 6132 3 1391 253 345 112 74 chr11 105695916 105696000 -16147856 - MamRep38 DNA hAT -190 105 15 3 1391 328 337 70 16 chr11 105697088 105697275 -16146581 - MIRb SINE MIR -29 239 43 3 1391 244 325 72 0 chr11 105697784 105697867 -16145989 + MIR3 SINE MIR 82 170 -38 3 1391 807 71 0 59 chr11 105698696 105698815 -16145041 - B1_Mus1 SINE Alu 0 148 37 3 1391 231 162 69 149 chr11 105698739 105698826 -16145030 - RLTR25B LTR ERVK -519 509 430 3 1391 387 0 0 0 chr11 105698840 105698883 -16144973 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1391 756 248 5 98 chr11 105698884 105699099 -16144757 - B3 SINE B2 -19 197 3 3 1391 292 174 56 28 chr11 105700630 105700701 -16143155 + B4A SINE B4 74 146 -146 3 1391 389 278 10 30 chr11 105700655 105700755 -16143101 + PB1D10 SINE Alu 15 112 -5 3 1391 404 304 85 31 chr11 105700791 105700920 -16142936 + B1F SINE Alu 5 140 -9 3 1391 717 293 130 30 chr11 105700921 105701341 -16142515 - L1MB8 LINE L1 -53 6125 5666 3 1391 263 28 28 0 chr11 105701341 105701377 -16142479 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1391 717 293 130 30 chr11 105701377 105701424 -16142432 - L1MB8 LINE L1 -513 5665 5613 3 1391 1374 138 0 51 chr11 105701456 105701544 -16142312 + URR1B DNA MER1_type 1 83 -142 3 1391 1445 63 16 0 chr11 105701544 105701734 -16142122 - B2_Mm1t SINE B2 0 193 1 3 1391 1374 138 0 51 chr11 105701734 105701882 -16141974 + URR1B DNA MER1_type 84 225 0 3 1391 180 0 0 0 chr11 105702213 105702233 -16141623 + (TGG)n Simple_repeat Simple_repeat 1 20 0 3 1391 25 31 0 0 chr11 105702730 105702762 -16141094 + AT_rich Low_complexity Low_complexity 1 32 0 3 1391 199 362 126 25 chr11 105703523 105703642 -16140214 - MIRb SINE MIR -91 177 47 3 1391 2235 108 111 0 chr11 105703683 105704044 -16139812 - Lx2A1 LINE L1 0 7008 6608 3 1391 568 254 23 23 chr11 105704315 105704448 -16139408 - B3 SINE B2 -82 134 2 3 1391 1434 264 127 27 chr11 105704449 105705156 -16138700 + Lx6 LINE L1 6275 7424 -36 3 1391 1191 61 0 0 chr11 105705380 105705527 -16138329 + B1_Mm SINE Alu 1 147 0 3 1391 321 89 0 0 chr11 105705527 105705572 -16138284 + (GAA)n Simple_repeat Simple_repeat 2 46 0 3 1391 392 253 12 0 chr11 105706173 105706256 -16137600 + PB1D10 SINE Alu 21 104 -13 3 1391 307 286 13 0 chr11 105706280 105706357 -16137499 + ID4_ SINE ID 2 79 -4 3 1391 280 313 10 0 chr11 105706387 105706486 -16137370 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 3 1391 1288 260 132 45 chr11 105706545 105707255 -16136601 + L1MC4a LINE L1 7108 7879 -3 3 1391 699 255 76 5 chr11 105707491 105707688 -16136168 - B3 SINE B2 -5 211 1 3 1391 310 337 42 0 chr11 105707689 105707784 -16136072 + B1F1 SINE Alu 12 110 -39 3 1391 288 0 0 0 chr11 105708166 105708198 -16135658 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1391 315 0 0 0 chr11 105708198 105708232 -16135624 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1391 257 359 13 0 chr11 105708232 105708310 -16135546 - ID4_ SINE ID -3 80 2 3 1391 356 282 13 0 chr11 105708390 105708468 -16135388 - RSINE1 SINE B4 -85 80 2 3 1391 3899 52 2 0 chr11 105708694 105709199 -16134657 + L1_Mus3 LINE L1 5751 6256 -382 3 1391 4497 10 0 0 chr11 105709199 105709692 -16134164 - MT2_Mm LTR ERVL 0 493 1 3 1391 302 0 0 0 chr11 105709692 105709730 -16134126 - MERVL-int LTR ERVL 0 5485 5448 3 1391 390 167 46 35 chr11 105709730 105709817 -16134039 - ORR1A3-int LTR MaLR -1323 640 553 3 1391 45543 18 0 0 chr11 105709817 105715176 -16128680 - MERVL-int LTR ERVL -125 5360 1 3 1391 4497 10 0 0 chr11 105715176 105715669 -16128187 - MT2_Mm LTR ERVL 0 493 1 3 1391 2505 67 50 3 chr11 105715669 105716026 -16127830 + L1_Mus3 LINE L1 6252 6625 -13 3 1391 216 97 0 0 chr11 105716027 105716058 -16127798 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 3 1391 976 171 13 0 chr11 105716334 105716486 -16127370 + B3 SINE B2 2 155 -61 3 1391 345 252 219 0 chr11 105716486 105716609 -16127247 - B4A SINE B4 -73 219 70 3 1391 279 299 15 0 chr11 105716905 105716972 -16126884 + ID4_ SINE ID 12 79 -4 3 1391 299 200 28 14 chr11 105717903 105717974 -16125882 + PB1D10 SINE Alu 41 112 -5 3 1391 198 0 0 0 chr11 105718007 105718029 -16125827 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1391 180 0 0 0 chr11 105718085 105718105 -16125751 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 3 1391 383 316 17 17 chr11 105719078 105719197 -16124659 + PB1 SINE Alu 5 123 -4 3 1391 501 264 171 36 chr11 105719762 105719955 -16123901 - B4A SINE B4 -16 276 58 3 1391 1364 86 16 0 chr11 105719969 105720155 -16123701 - B2_Mm1t SINE B2 -4 189 1 3 1391 232 264 130 15 chr11 105720248 105720379 -16123477 + L1ME3 LINE L1 2798 2943 -3203 3 1391 372 302 117 37 chr11 105720461 105720714 -16123142 + L1ME3 LINE L1 3182 3452 -2694 3 1391 233 274 0 0 chr11 105720894 105720956 -16122900 + L1ME3 LINE L1 3812 3873 -2273 3 1391 311 220 106 0 chr11 105720990 105721102 -16122754 + L1ME3 LINE L1 5738 5863 -299 3 1391 284 313 42 44 chr11 105721120 105721287 -16122569 + L1ME3 LINE L1 5953 6122 -42 3 1391 33 0 0 0 chr11 105721963 105721996 -16121860 + AT_rich Low_complexity Low_complexity 1 33 0 3 1391 239 329 0 34 chr11 105722026 105722114 -16121742 + GA-rich Low_complexity Low_complexity 2 86 0 3 1391 208 236 0 0 chr11 105722280 105722335 -16121521 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1391 1038 59 88 0 chr11 105722339 105722475 -16121381 - B1_Mus1 SINE Alu 0 148 1 3 1391 22 35 0 0 chr11 105722475 105722504 -16121352 + AT_rich Low_complexity Low_complexity 1 29 0 3 1391 30 0 0 0 chr11 105722695 105722725 -16121131 + AT_rich Low_complexity Low_complexity 1 30 0 3 1391 378 202 141 33 chr11 105723074 105723166 -16120690 + RSINE1 SINE B4 1 102 -63 3 1391 378 0 0 0 chr11 105723168 105723210 -16120646 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1391 1350 52 0 0 chr11 105723810 105723982 -16119874 + L1_Mus1 LINE L1 6395 6566 -1 3 1391 651 138 17 60 chr11 105724042 105724158 -16119698 + PB1D9 SINE Alu 1 111 -9 3 1391 540 0 0 0 chr11 105724158 105724218 -16119638 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1391 345 231 13 13 chr11 105724220 105724299 -16119557 + ID4_ SINE ID 2 80 -3 3 1391 240 185 0 0 chr11 105724573 105724627 -16119229 + A-rich Low_complexity Low_complexity 1 54 0 3 1391 735 116 0 0 chr11 105725664 105725776 -16118080 + (GA)n Simple_repeat Simple_repeat 1 112 0 3 1391 450 299 8 33 chr11 105726580 105726709 -16117147 - PB1D10 SINE Alu 0 120 1 3 1391 335 379 26 13 chr11 105727002 105727232 -16116624 - L2a LINE L2 -1 3425 3193 3 1391 395 283 45 10 chr11 105727437 105727546 -16116310 + B1F SINE Alu 2 117 0 3 1391 376 347 60 40 chr11 105727922 105728171 -16115685 - L2a LINE L2 -1201 2218 1965 3 1391 23 54 0 0 chr11 105728329 105728366 -16115490 + AT_rich Low_complexity Low_complexity 1 37 0 3 1391 573 263 146 19 chr11 105729879 105730092 -16113764 - Tigger7 DNA MER2_type -26 2465 2226 3 1391 1144 292 105 26 chr11 105730074 105730454 -16113402 - Tigger7 DNA MER2_type -2081 410 1 3 1391 1138 36 0 0 chr11 105730507 105730646 -16113210 + B1_Mus1 SINE Alu 10 148 0 3 1391 319 270 160 0 chr11 105731779 105731879 -16111977 - PB1D10 SINE Alu -1 116 1 3 1391 866 195 30 30 chr11 105732872 105733041 -16110815 + B3 SINE B2 2 170 -46 3 1391 326 247 13 0 chr11 105733785 105733862 -16109994 + ID4 SINE ID 1 78 -5 3 1391 282 301 77 10 chr11 105734410 105734514 -16109342 - PB1D10 SINE Alu -5 112 2 3 1391 413 259 0 0 chr11 105734546 105734631 -16109225 + B4 SINE B4 2 86 -206 3 1391 263 349 0 0 chr11 105734703 105734789 -16109067 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 1391 387 56 0 0 chr11 105734941 105734995 -16108861 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1391 371 257 78 33 chr11 105735193 105735346 -16108510 + L2a LINE L2 2731 2890 -529 3 1391 266 327 69 70 chr11 105735433 105735775 -16108081 + L2a LINE L2 3056 3421 -5 3 1391 1422 277 21 56 chr11 105736429 105737033 -16106823 + L1MA6 LINE L1 5280 5862 -438 3 1391 259 243 54 0 chr11 105737110 105737184 -16106672 + L1MA6 LINE L1 6063 6140 -160 3 1391 451 278 35 0 chr11 105738513 105738628 -16105228 - Lx8 LINE L1 -205 7268 7150 4 1391 1244 249 106 57 chr11 105738636 105738683 -16105173 + L1M2 LINE L1 3535 3576 -2304 4 1391 931 227 14 50 chr11 105738683 105738901 -16104955 + B3 SINE B2 1 210 -6 4 1391 2192 262 127 42 chr11 105738901 105740236 -16103620 + L1M2 LINE L1 3577 5071 -1072 4 1391 538 366 79 64 chr11 105741063 105741393 -16102463 - MLT1J1 LTR MaLR -10 434 100 4 1391 301 293 0 35 chr11 105742225 105742310 -16101546 + ID_B1 SINE B4 68 149 -75 4 1391 309 215 45 15 chr11 105742248 105742314 -16101542 + PB1D7 SINE Alu 8 75 -45 4 1391 724 246 75 10 chr11 105742501 105742702 -16101154 + B3 SINE B2 3 216 0 4 1391 21 0 0 0 chr11 105742735 105742756 -16101100 + AT_rich Low_complexity Low_complexity 1 21 0 4 1391 409 253 26 0 chr11 105742764 105742863 -16100993 + B1_Mur3 SINE Alu 39 148 0 4 1391 437 129 144 28 chr11 105743139 105743279 -16100577 - MTD LTR MaLR 0 379 218 4 1391 277 256 45 90 chr11 105743496 105743629 -16100227 - MTD LTR MaLR -288 131 5 4 1391 208 96 0 55 chr11 105744163 105744218 -16099638 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 4 1391 1180 68 0 0 chr11 105744226 105744374 -16099482 - B1_Mus1 SINE Alu 0 148 1 4 1391 598 232 64 21 chr11 105744406 105744547 -16099309 - B1_Mus1 SINE Alu 0 148 2 4 1391 234 276 0 116 chr11 105744757 105744775 -16099081 - ID_B1 SINE B4 -58 166 91 4 1391 247 214 0 83 chr11 105744775 105744843 -16099013 - B1F SINE Alu -45 72 10 4 1391 231 312 42 92 chr11 105745751 105745871 -16097985 - PB1D10 SINE Alu -1 116 3 4 1391 503 336 22 0 chr11 105745949 105746083 -16097773 - RSINE1 SINE B4 -11 154 18 4 1391 737 263 52 5 chr11 105746267 105746412 -16097444 + ID_B1 SINE B4 5 156 -68 4 1391 659 240 43 43 chr11 105746412 105746573 -16097283 + RSINE1 SINE B4 3 163 -2 4 1391 737 263 52 5 chr11 105746573 105746637 -16097219 + ID_B1 SINE B4 157 223 -1 4 1391 188 333 49 33 chr11 105747103 105747249 -16096607 - L2c LINE L2 -82 3305 3133 4 1391 215 192 38 25 chr11 105747783 105747863 -16095993 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 1391 274 301 142 77 chr11 105747992 105748060 -16095796 + ID SINE ID 12 89 -135 4 1391 353 248 83 37 chr11 105748060 105748169 -16095687 + PB1D10 SINE Alu 4 117 0 4 1391 414 0 0 0 chr11 105749214 105749260 -16094596 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1391 674 240 25 0 chr11 105749348 105749552 -16094304 - L1MB8 LINE L1 -211 5967 5759 4 1391 248 298 112 41 chr11 105749740 105749838 -16094018 - B1F1 SINE Alu -21 128 24 4 1391 508 246 17 0 chr11 105749990 105750108 -16093748 - L1MB8 LINE L1 -558 5626 5507 4 1391 493 304 29 7 chr11 105750241 105750380 -16093476 - ID_B1 SINE B4 -9 215 74 4 1391 448 346 15 0 chr11 105750470 105750606 -16093250 - ID_B1 SINE B4 -8 216 79 4 1391 210 257 200 0 chr11 105751006 105751076 -16092780 + MIRb SINE MIR 127 210 -58 4 1391 357 225 225 28 chr11 105751218 105751360 -16092496 - MER58B DNA MER1_type -2 339 170 4 1391 222 286 0 41 chr11 105751915 105751971 -16091885 + T-rich Low_complexity Low_complexity 17 70 0 4 1391 613 226 0 27 chr11 105751971 105752121 -16091735 - B1F2 SINE Alu -2 147 2 4 1391 222 286 0 41 chr11 105752121 105752137 -16091719 + T-rich Low_complexity Low_complexity 1 16 0 4 1391 346 326 61 69 chr11 105752479 105752726 -16091130 + MIRb SINE MIR 14 258 -10 4 1391 226 225 0 0 chr11 105753660 105753700 -16090156 + ID4_ SINE ID 25 64 -19 4 1391 813 143 35 21 chr11 105753807 105753950 -16089906 + B1_Mus1 SINE Alu 3 147 -1 4 1391 703 294 80 13 chr11 105753978 105754278 -16089578 + Lx9 LINE L1 7108 7427 -217 4 1391 414 0 0 0 chr11 105754310 105754356 -16089500 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1391 28 29 0 0 chr11 105754447 105754482 -16089374 + AT_rich Low_complexity Low_complexity 1 35 0 4 1391 642 275 63 89 chr11 105754510 105754781 -16089075 + Lx6 LINE L1 7150 7413 -47 4 1391 420 181 115 21 chr11 105754867 105754963 -16088893 - PB1D10 SINE Alu -2 115 11 4 1391 21 0 0 0 chr11 105755396 105755417 -16088439 + AT_rich Low_complexity Low_complexity 1 21 0 4 1391 415 284 35 92 chr11 105755417 105755442 -16088414 - ID_B1 SINE B4 -46 246 163 4 1391 677 161 14 101 chr11 105755442 105755580 -16088276 - B1_Mus2 SINE Alu -5 142 17 4 1391 415 284 35 92 chr11 105755580 105755605 -16088251 - ID_B1 SINE B4 -46 162 69 4 1391 476 366 43 35 chr11 105755763 105755825 -16088031 - MLT1J2 LTR MaLR -153 295 235 4 1391 1556 134 55 115 chr11 105755825 105756172 -16087684 - ORR1A4 LTR MaLR 0 329 4 4 1391 476 366 43 35 chr11 105756172 105756364 -16087492 - MLT1J2 LTR MaLR -214 234 39 4 1391 241 23 23 0 chr11 105756381 105756424 -16087432 + L1Md_A LINE L1 6539 6582 0 4 1391 1129 56 28 0 chr11 105756497 105756639 -16087217 + B1_Mus1 SINE Alu 1 146 -2 4 1391 240 35 0 0 chr11 105756647 105756676 -16087180 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1391 692 220 15 0 chr11 105756925 105757057 -16086799 + B1_Mus1 SINE Alu 3 136 -12 4 1391 195 42 0 0 chr11 105757082 105757106 -16086750 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4 1391 648 308 41 20 chr11 105758613 105758858 -16084998 - B4A SINE B4 -42 250 1 4 1391 1284 67 84 0 chr11 105759422 105759579 -16084277 + B2_Mm1t SINE B2 1 160 -33 4 1391 414 0 0 0 chr11 105759579 105759625 -16084231 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4 1391 1284 67 84 0 chr11 105759625 105759645 -16084211 + B2_Mm1t SINE B2 161 191 -2 4 1391 624 220 8 8 chr11 105759675 105759808 -16084048 + B1_Mur3 SINE Alu 1 133 -16 4 1391 456 255 41 0 chr11 105759816 105759914 -16083942 + PB1D10 SINE Alu 11 112 -5 4 1391 1547 183 99 44 chr11 105760324 105760855 -16083001 - RMER6D LTR ERVK -61 629 55 4 1391 306 268 181 57 chr11 105761692 105762020 -16081836 - MER63D DNA AcHobo -2 1059 619 4 1391 1251 20 0 20 chr11 105762026 105762175 -16081681 + B1_Mus2 SINE Alu 2 147 0 4 1391 796 269 19 19 chr11 105762243 105762455 -16081401 - MER63D DNA AcHobo -711 350 139 4 1391 337 231 15 15 chr11 105762450 105762516 -16081340 - ID4 SINE ID -1 82 17 4 1391 23 54 0 0 chr11 105762534 105762571 -16081285 + AT_rich Low_complexity Low_complexity 1 37 0 4 1391 545 248 12 50 chr11 105762588 105762615 -16081241 + ID_B1 SINE B4 55 209 -15 4 1391 887 128 15 8 chr11 105762615 105762749 -16081107 + B1_Mur4 SINE Alu 1 135 -15 4 1391 659 242 48 116 chr11 105764782 105765076 -16078780 + B4A SINE B4 3 276 -16 4 1391 309 135 0 0 chr11 105765824 105765876 -16077980 + (TTTTC)n Simple_repeat Simple_repeat 2 53 0 4 1391 638 207 27 33 chr11 105765889 105766039 -16077817 - B1_Mur4 SINE Alu 0 150 2 4 1391 404 130 11 0 chr11 105766518 105766610 -16077246 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 1391 261 109 0 0 chr11 105766609 105766655 -16077201 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1391 225 0 0 0 chr11 105766655 105766680 -16077176 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1391 258 22 42 42 chr11 105766759 105766807 -16077049 + (TTCTCC)n Simple_repeat Simple_repeat 6 53 0 4 1391 593 152 38 9 chr11 105767485 105767591 -16076265 + B1_Mur4 SINE Alu 35 143 -7 4 1391 216 182 0 0 chr11 105767591 105767635 -16076221 + GA-rich Low_complexity Low_complexity 2 45 0 4 1391 468 0 0 0 chr11 105767860 105767912 -16075944 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1391 405 0 0 0 chr11 105767912 105767956 -16075900 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1391 398 196 155 10 chr11 105768026 105768129 -16075727 + RSINE1 SINE B4 12 129 -36 4 1391 889 250 76 142 chr11 105768483 105768728 -16075128 + B4A SINE B4 2 235 -57 4 1391 1535 178 111 6 chr11 105768728 105769072 -16074784 - ORR1C2 LTR MaLR 0 384 5 4 1391 889 250 76 142 chr11 105769072 105769129 -16074727 + B4A SINE B4 236 284 -8 4 1391 379 263 50 0 chr11 105769203 105769302 -16074554 + PB1D10 SINE Alu 1 104 -13 4 1391 817 190 0 0 chr11 105770607 105770749 -16073107 + B1_Mur2 SINE Alu 3 144 -5 4 1391 1326 65 58 27 chr11 105771742 105771930 -16071926 + B2_Mm2 SINE B2 2 195 0 4 1391 1278 82 49 6 chr11 105771982 105772165 -16071691 - B2_Mm2 SINE B2 -4 191 1 4 1391 241 213 0 41 chr11 105772192 105772241 -16071615 - PB1D10 SINE Alu -35 82 36 4 1391 341 43 0 21 chr11 105772266 105772314 -16071542 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1391 402 305 11 0 chr11 105772345 105772440 -16071416 - B1F1 SINE Alu -52 97 2 4 1391 744 151 42 0 chr11 105772664 105772783 -16071073 - B1_Mur1 SINE Alu -20 129 6 4 1391 218 280 20 0 chr11 105773808 105773858 -16069998 + ID SINE ID 1 51 -173 4 1391 401 250 111 0 chr11 105773965 105774073 -16069783 - B1F SINE Alu -28 121 2 4 1392 279 114 0 0 chr11 105775251 105775295 -16068561 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1392 403 266 10 21 chr11 105776601 105776697 -16067159 + ID_B1 SINE B4 99 193 -31 4 1392 1650 32 0 0 chr11 105777174 105777364 -16066492 + B2_Mm1t SINE B2 2 191 -2 4 1392 1243 61 0 0 chr11 105779501 105779649 -16064207 + B1_Mus1 SINE Alu 1 148 0 4 1392 305 114 0 0 chr11 105779667 105779711 -16064145 - HAL1-3A_ME LINE L1 -840 2018 1975 4 1392 510 170 0 0 chr11 105779713 105779807 -16064049 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 1392 244 309 15 0 chr11 105779832 105779900 -16063956 + ID4 SINE ID 6 74 -9 4 1392 317 283 45 45 chr11 105780199 105780310 -16063546 + PB1D10 SINE Alu 1 111 -6 4 1392 348 118 0 0 chr11 105781801 105781869 -16061987 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1392 868 146 7 7 chr11 105782473 105782611 -16061245 + B1_Mur2 SINE Alu 3 140 -9 4 1392 207 0 0 0 chr11 105783169 105783192 -16060664 + (CAG)n Simple_repeat Simple_repeat 3 25 0 4 1392 898 25 16 16 chr11 105785615 105785736 -16058120 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 4 1392 642 13 0 0 chr11 105789917 105789992 -16053864 + (CTTTG)n Simple_repeat Simple_repeat 3 77 0 4 1392 475 250 18 9 chr11 105791008 105791117 -16052739 - PB1 SINE Alu -9 118 9 4 1392 236 309 35 123 chr11 105791017 105791220 -16052636 - MT2B2 LTR ERVL -330 254 70 5 1392 990 212 101 31 chr11 105792728 105792986 -16050870 - Lx8 LINE L1 -132 7341 7066 5 1392 378 0 0 0 chr11 105793004 105793046 -16050810 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1392 1007 257 126 9 chr11 105793096 105793430 -16050426 - Lx8 LINE L1 -561 6912 6540 5 1392 1098 117 96 0 chr11 105793949 105794137 -16049719 + URR1B DNA MER1_type 20 225 0 5 1392 834 207 0 0 chr11 105794272 105794417 -16049439 + B1_Mus2 SINE Alu 3 147 0 5 1392 226 254 16 33 chr11 105794502 105794563 -16049293 - ID4 SINE ID -7 76 17 5 1392 269 284 24 12 chr11 105794575 105794657 -16049199 - ID_B1 SINE B4 -63 161 79 5 1392 378 0 0 0 chr11 105799159 105799201 -16044655 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1392 252 0 0 0 chr11 105800465 105800493 -16043363 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1392 209 342 57 16 chr11 105801972 105802094 -16041762 - MIR SINE MIR -36 226 100 5 1392 230 263 18 0 chr11 105802287 105802344 -16041512 + BC1_Mm scRNA scRNA 23 80 -72 5 1392 302 253 40 0 chr11 105803078 105803153 -16040703 - PB1D7 SINE Alu -5 115 38 5 1392 309 241 101 47 chr11 105803750 105803898 -16039958 + ORSL DNA Tip100 95 250 -25 5 1392 289 331 8 41 chr11 105804008 105804131 -16039725 + MIRb SINE MIR 142 260 -8 5 1392 226 308 51 0 chr11 105804311 105804389 -16039467 - PB1D7 SINE Alu -16 104 23 5 1392 351 0 0 0 chr11 105805989 105806028 -16037828 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1392 228 35 0 0 chr11 105806028 105806056 -16037800 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1392 195 100 0 0 chr11 105807105 105807135 -16036721 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1392 757 143 16 16 chr11 105807174 105807302 -16036554 - B1_Mur4 SINE Alu -21 129 2 5 1392 342 297 77 15 chr11 105808705 105808835 -16035021 - L2b LINE L2 -1 3374 3237 5 1392 3327 26 34 0 chr11 105809242 105809625 -16034231 + MTA_Mm LTR MaLR 1 396 0 5 1392 2833 77 50 3 chr11 105810208 105810586 -16033270 - MTA_Mm LTR MaLR 0 396 1 5 1392 325 235 146 115 chr11 105811437 105811663 -16032193 - B4 SINE B4 -59 233 1 5 1392 562 26 0 0 chr11 105811674 105811750 -16032106 - B1_Mus2 SINE Alu -71 76 1 5 1392 364 248 12 1 chr11 105812463 105812557 -16031299 + B4 SINE B4 1 95 -70 5 1392 279 0 0 0 chr11 105812557 105812588 -16031268 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 1392 884 112 14 0 chr11 105812588 105812731 -16031125 + (GGAA)n Simple_repeat Simple_repeat 4 148 0 5 1392 532 143 105 0 chr11 105812731 105812836 -16031020 + B1_Mur2 SINE Alu 33 148 -1 5 1392 269 109 22 0 chr11 105812856 105812902 -16030954 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 5 1392 228 220 33 33 chr11 105812924 105812985 -16030871 + B4A SINE B4 86 146 -146 5 1392 308 264 58 0 chr11 105813049 105813170 -16030686 + (CA)n Simple_repeat Simple_repeat 1 128 0 5 1392 274 280 63 21 chr11 105813862 105813957 -16029899 + MIR SINE MIR 113 211 -51 5 1392 367 310 3 0 chr11 105815107 105815214 -16028642 - B1F SINE Alu -2 118 9 5 1392 1236 48 0 0 chr11 105815265 105815411 -16028445 - B1_Mus2 SINE Alu 0 147 2 5 1392 373 333 26 0 chr11 105815464 105815578 -16028278 - RSINE1 SINE B4 -39 126 10 5 1392 653 115 71 0 chr11 105815622 105815735 -16028121 + B1_Mur2 SINE Alu 6 126 -23 5 1392 421 238 94 16 chr11 105815735 105815750 -16028106 + ID_B1 SINE B4 87 224 0 5 1392 338 143 16 0 chr11 105815750 105815813 -16028043 + GA-rich Low_complexity Low_complexity 1 64 0 5 1392 180 0 0 0 chr11 105815892 105815912 -16027944 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1392 1236 54 0 0 chr11 105815912 105816059 -16027797 - B1_Mus2 SINE Alu 0 147 1 5 1392 225 271 57 34 chr11 105816142 105816230 -16027626 + ID_B1 SINE B4 130 219 -5 5 1392 374 198 41 124 chr11 105816244 105816365 -16027491 + PB1D10 SINE Alu 1 111 -6 5 1392 1822 165 75 24 chr11 105816497 105816923 -16026933 - RMER16 LTR ERVK -2 531 2 5 1392 213 39 0 0 chr11 105816927 105816953 -16026903 + (TAA)n Simple_repeat Simple_repeat 1 26 0 5 1392 615 27 0 0 chr11 105817215 105817288 -16026568 + (CACG)n Simple_repeat Simple_repeat 1 73 0 5 1392 225 0 0 0 chr11 105817288 105817313 -16026543 + (CAGC)n Simple_repeat Simple_repeat 1 25 0 5 1392 361 145 66 0 chr11 105817649 105817725 -16026131 - Lx7 LINE L1 -1 7695 7615 5 1392 288 0 0 0 chr11 105817751 105817783 -16026073 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1392 340 236 54 9 chr11 105817804 105817915 -16025941 - Lx7 LINE L1 -312 7384 7269 5 1392 327 189 7 45 chr11 105817927 105818006 -16025850 + ID4 SINE ID 21 99 -53 5 1392 428 171 7 76 chr11 105818047 105818339 -16025517 + G-rich Low_complexity Low_complexity 1 271 0 5 1392 228 136 29 57 chr11 105818357 105818427 -16025429 + G-rich Low_complexity Low_complexity 2 69 0 5 1392 344 312 55 16 chr11 105818620 105818645 -16025211 + B4 SINE B4 64 93 -199 5 1392 531 228 4 8 chr11 105818645 105818784 -16025072 + B1_Mus2 SINE Alu 3 139 -10 5 1392 305 215 62 0 chr11 105818743 105818808 -16025048 - PB1D10 SINE Alu -31 86 18 5 1392 1242 55 0 0 chr11 105819345 105819491 -16024365 + B1_Mus2 SINE Alu 2 147 0 5 1392 545 234 0 9 chr11 105819501 105819609 -16024247 - B1_Mur1 SINE Alu -28 121 15 5 1392 215 290 0 104 chr11 105819744 105819821 -16024035 - ID4 SINE ID -11 72 4 5 1392 789 195 0 0 chr11 105819847 105819975 -16023881 - B1_Mus2 SINE Alu -19 128 1 5 1392 378 259 23 114 chr11 105819982 105820113 -16023743 - PB1D7 SINE Alu 0 120 2 5 1392 334 279 27 9 chr11 105820128 105820240 -16023616 - L1MB7 LINE L1 -344 5840 5727 5 1392 293 310 8 33 chr11 105820277 105820397 -16023459 + RSINE1 SINE B4 4 120 -45 5 1392 201 74 0 0 chr11 105820405 105820432 -16023424 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1392 241 308 123 19 chr11 105821483 105821589 -16022267 + Charlie5 DNA MER1_type 72 188 -2436 5 1392 288 304 238 10 chr11 105821591 105821784 -16022072 + Charlie5 DNA MER1_type 2348 2584 -40 5 1392 642 245 110 0 chr11 105821784 105821984 -16021872 + ID_B1 SINE B4 1 222 -2 5 1392 247 250 0 45 chr11 105821984 105822051 -16021805 + G-rich Low_complexity Low_complexity 3 66 0 5 1392 1030 142 7 14 chr11 105822086 105822378 -16021478 + (TATG)n Simple_repeat Simple_repeat 1 289 0 5 1392 221 286 57 0 chr11 105822388 105822458 -16021398 - ID4 SINE ID -8 75 2 5 1392 2543 133 43 49 chr11 105822691 105823204 -16020652 + RLTR28 LTR ERVL 1 510 -14 5 1392 414 0 0 0 chr11 105823234 105823280 -16020576 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1392 255 240 0 0 chr11 105823284 105823334 -16020522 - B1F2 SINE Alu -93 56 7 5 1392 271 304 63 7 chr11 105823384 105823495 -16020361 - MIRc SINE MIR -62 200 89 5 1392 232 300 63 91 chr11 105823889 105824032 -16019824 + ID_B1 SINE B4 86 224 0 5 1392 210 234 21 0 chr11 105824342 105824389 -16019467 - ID4 SINE ID -10 73 26 5 1392 1041 234 124 22 chr11 105824410 105824773 -16019083 - L1MB7 LINE L1 0 6184 5785 5 1392 358 250 79 26 chr11 105824942 105825094 -16018762 - L1MB7 LINE L1 -381 5803 5644 5 1392 1097 95 0 20 chr11 105825342 105825493 -16018363 + B1_Mus1 SINE Alu 1 148 0 5 1392 1288 233 23 0 chr11 105825524 105825790 -16018066 + B4A SINE B4 1 272 -20 5 1392 769 225 36 46 chr11 105826153 105826349 -16017507 - B3A SINE B2 0 198 5 5 1392 1452 52 0 0 chr11 105826382 105826772 -16017084 + (TG)n Simple_repeat Simple_repeat 1 390 0 5 1392 494 265 45 15 chr11 105826785 105826919 -16016937 - B1F SINE Alu -2 147 10 5 1392 210 305 0 0 chr11 105829327 105829386 -16014470 + (CTG)n Simple_repeat Simple_repeat 3 61 0 5 1392 27 0 0 0 chr11 105829565 105829592 -16014264 + GC_rich Low_complexity Low_complexity 1 27 0 5 1392 333 0 0 0 chr11 105830675 105830712 -16013144 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1392 270 0 0 0 chr11 105830712 105830741 -16013115 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1392 1352 129 36 36 chr11 105831289 105831514 -16012342 + URR1B DNA MER1_type 1 225 0 5 1392 501 276 0 0 chr11 105832305 105832410 -16011446 + PB1D10 SINE Alu 6 110 -7 5 1392 439 174 19 0 chr11 105832427 105832517 -16011339 + PB1D10 SINE Alu 9 109 -40 5 1392 186 43 0 0 chr11 105834405 105834428 -16009428 + (G)n Simple_repeat Simple_repeat 1 23 0 5 1392 237 190 0 48 chr11 105835686 105835769 -16008087 + CT-rich Low_complexity Low_complexity 3 81 0 5 1392 378 0 0 0 chr11 105837025 105837067 -16006789 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1392 1205 62 0 0 chr11 105839268 105839413 -16004443 + B1_Mus2 SINE Alu 2 146 -1 5 1392 384 238 0 12 chr11 105841173 105841254 -16002602 - ID4 SINE ID 0 83 4 5 1392 522 157 0 0 chr11 105841900 105842002 -16001854 + (CTATA)n Simple_repeat Simple_repeat 2 103 0 5 1392 1201 56 0 0 chr11 105843479 105843622 -16000234 + B1_Mus2 SINE Alu 5 147 0 5 1392 195 129 0 0 chr11 105843623 105843654 -16000202 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1392 230 268 0 0 chr11 105843889 105843945 -15999911 - MLT1G3 LTR MaLR -6 589 534 5 1392 378 346 24 30 chr11 105844049 105844213 -15999643 + RSINE1 SINE B4 3 165 0 5 1392 410 245 32 0 chr11 105844608 105844702 -15999154 - PB1D10 SINE Alu -2 115 19 5 1392 1007 147 23 6 chr11 105844846 105844987 -15998869 + B2_Mm2 SINE B2 1 145 -50 5 1392 360 0 0 0 chr11 105844987 105845027 -15998829 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1392 1007 147 23 6 chr11 105845027 105845056 -15998800 + B2_Mm2 SINE B2 146 174 -21 5 1392 4565 49 5 5 chr11 105845215 105845768 -15998088 - L1Md_F3 LINE L1 -14 6570 6018 5 1392 512 226 96 0 chr11 105847668 105847783 -15996073 - B1F SINE Alu -19 130 5 5 1392 206 0 69 0 chr11 105851300 105851329 -15992527 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1392 185 86 57 0 chr11 105851522 105851557 -15992299 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 6 1392 669 25 0 0 chr11 105851918 105851997 -15991859 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1392 324 0 0 0 chr11 105851997 105852032 -15991824 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1392 580 207 49 21 chr11 105852032 105852175 -15991681 - RSINE1 SINE B4 -16 149 3 6 1392 453 319 97 0 chr11 105852193 105852337 -15991519 - RSINE1 SINE B4 -5 160 3 6 1392 782 276 92 0 chr11 105852337 105852548 -15991308 - B4A SINE B4 -59 233 3 6 1392 232 143 16 82 chr11 105852587 105852648 -15991208 - PB1 SINE Alu 0 127 71 6 1392 596 81 11 0 chr11 105852657 105852744 -15991112 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1392 320 210 0 0 chr11 105852842 105852904 -15990952 - PB1D7 SINE Alu -57 63 2 6 1392 967 94 0 159 chr11 105853158 105853334 -15990522 + B1_Mus1 SINE Alu 1 148 0 6 1392 443 289 86 0 chr11 105853515 105853667 -15990189 + ID_B1 SINE B4 56 220 -4 6 1392 391 276 0 72 chr11 105853957 105854082 -15989774 + PB1D10 SINE Alu 2 117 0 6 1392 213 200 0 0 chr11 105854727 105854767 -15989089 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 6 1392 230 347 19 35 chr11 105854848 105854992 -15988864 + MIR3 SINE MIR 16 159 -109 6 1392 3912 150 84 35 chr11 105855003 105855854 -15988002 - RLTR13D6 LTR ERVK -46 856 1 6 1392 200 290 72 0 chr11 105859870 105859939 -15983917 + MIRm SINE MIR 99 172 -104 6 1392 316 240 0 135 chr11 105860076 105860187 -15983669 + ID_B1 SINE B4 128 223 -1 6 1392 612 0 0 0 chr11 105860710 105860778 -15983078 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 6 1392 701 133 159 0 chr11 105860778 105860891 -15982965 - B1_Mus2 SINE Alu -12 135 5 6 1392 288 0 0 0 chr11 105862338 105862370 -15981486 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1392 522 225 53 18 chr11 105862851 105862964 -15980892 - PB1D10 SINE Alu 0 117 1 6 1392 372 94 0 0 chr11 105863750 105863803 -15980053 + (GGA)n Simple_repeat Simple_repeat 3 55 0 6 1392 305 279 197 14 chr11 105863893 105864035 -15979821 - LTR31 LTR ERV1 -65 554 387 6 1392 467 287 0 19 chr11 105864406 105864509 -15979347 + PB1D10 SINE Alu 1 101 -16 6 1392 22 0 0 0 chr11 105864602 105864624 -15979232 + AT_rich Low_complexity Low_complexity 1 22 0 6 1392 225 263 4 65 chr11 105864675 105864777 -15979079 - ID4 SINE ID -26 126 30 6 1392 293 298 53 0 chr11 105864934 105865028 -15978828 - MIR SINE MIR -63 145 47 6 1392 198 0 0 0 chr11 105869226 105869248 -15974608 + (CCCCAA)n Simple_repeat Simple_repeat 1 22 0 6 1392 322 280 108 45 chr11 105871175 105871332 -15972524 - MER5B DNA MER1_type -11 167 1 6 1392 430 261 0 25 chr11 105871639 105871800 -15972056 + (TATG)n Simple_repeat Simple_repeat 4 160 0 6 1392 1023 142 0 0 chr11 105872705 105872853 -15971003 - B1_Mus1 SINE Alu 0 148 1 6 1392 318 277 105 18 chr11 105876610 105876724 -15967132 + MIR3 SINE MIR 68 191 -17 6 1392 1177 175 71 0 chr11 105877457 105877668 -15966188 + URR1A DNA MER1_type 1 226 0 6 1392 243 311 109 27 chr11 105877698 105877862 -15965994 - MIRb SINE MIR -84 178 8 6 1392 286 286 0 38 chr11 105878104 105878184 -15965672 + BC1_Mm scRNA scRNA 2 78 -74 6 1392 192 77 0 0 chr11 105878190 105878216 -15965640 + (CAAG)n Simple_repeat Simple_repeat 1 26 0 6 1392 265 0 123 0 chr11 105879571 105879636 -15964220 + (TCCC)n Simple_repeat Simple_repeat 2 74 0 6 1392 912 65 145 0 chr11 105879641 105879779 -15964077 - B2_Mm2 SINE B2 -37 158 1 6 1392 271 303 136 84 chr11 105880597 105880620 -15963236 + B4 SINE B4 70 219 -73 6 1392 280 200 148 59 chr11 105880609 105880710 -15963146 + MT2B LTR ERVL 155 264 -337 6 1392 663 132 138 16 chr11 105880620 105880737 -15963119 + B1_Mur3 SINE Alu 10 142 -7 6 1392 270 0 0 0 chr11 105880737 105880767 -15963089 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1392 351 0 0 0 chr11 105881094 105881133 -15962723 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 1392 530 154 248 33 chr11 105882167 105882288 -15961568 + B1_Mus1 SINE Alu 2 148 0 6 1392 241 303 141 0 chr11 105882372 105882471 -15961385 - RSINE1 SINE B4 -37 128 16 6 1392 201 200 120 0 chr11 105882513 105882563 -15961293 + MIRm SINE MIR 63 118 -158 6 1392 236 209 0 0 chr11 105882857 105882900 -15960956 + ID SINE ID 4 46 -178 6 1392 189 245 0 0 chr11 105882964 105883013 -15960843 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 1392 186 130 109 0 chr11 105883818 105883864 -15959992 + MIR SINE MIR 84 134 -74 6 1392 265 298 64 0 chr11 105884427 105884521 -15959335 - MIR SINE MIR -86 176 77 6 1392 527 333 94 0 chr11 105885436 105885649 -15958207 - MIRb SINE MIR -9 259 27 6 1392 1946 183 45 15 chr11 105885830 105886229 -15957627 - MTD LTR MaLR -8 411 1 6 1392 293 290 57 76 chr11 105888497 105888704 -15955152 + MIR SINE MIR 39 245 -23 6 1392 894 235 5 53 chr11 105889348 105889555 -15954301 + B4 SINE B4 1 197 -95 6 1392 2268 87 27 27 chr11 105889559 105889926 -15953930 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1392 29305 24 1 0 chr11 105889930 105893197 -15950659 - IAPEz-int LTR ERVK -3 6478 3209 6 1392 8291 79 65 69 chr11 105893195 105894507 -15949349 - IAPEz-int LTR ERVK -5168 1313 8 6 1392 2268 87 27 27 chr11 105894507 105894874 -15948982 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1392 235 344 0 0 chr11 105894877 105894941 -15948915 + B4 SINE B4 216 279 -13 6 1392 317 24 24 0 chr11 105894967 105895009 -15948847 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1392 1273 28 0 0 chr11 105896599 105896742 -15947114 + B1_Mm SINE Alu 5 147 0 6 1392 353 320 66 26 chr11 105896757 105896908 -15946948 + L1M2 LINE L1 3589 3745 -2398 6 1392 656 226 14 7 chr11 105896940 105897087 -15946769 - ID_B1 SINE B4 0 224 77 6 1392 527 244 139 0 chr11 105897213 105897393 -15946463 + B3 SINE B2 3 207 -9 6 1392 254 341 23 12 chr11 105899914 105900000 -15943856 - B4 SINE B4 -137 155 69 6 1392 236 186 0 0 chr11 105900215 105900258 -15943598 + ID4_ SINE ID 41 83 0 6 1392 243 203 203 0 chr11 105900376 105900440 -15943416 + B3 SINE B2 48 124 -92 6 1392 368 296 46 0 chr11 105901052 105901160 -15942696 + B1F1 SINE Alu 36 148 -1 6 1392 599 48 12 0 chr11 105901656 105901739 -15942117 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 1392 330 87 0 0 chr11 105901879 105901925 -15941931 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1392 548 243 143 0 chr11 105901946 105902135 -15941721 - L1MA4A LINE L1 -373 5930 5715 6 1392 509 240 21 0 chr11 105902209 105902305 -15941551 - B1F SINE Alu -51 98 1 6 1392 929 275 113 15 chr11 105902305 105902829 -15941027 - L1_Mur3 LINE L1 -316 5564 4977 6 1392 1201 27 7 7 chr11 105902835 105902982 -15940874 - B1_Mus2 SINE Alu 0 147 1 6 1392 313 299 56 0 chr11 105903011 105903118 -15940738 - PB1D10 SINE Alu 0 117 5 6 1392 329 241 46 0 chr11 105903035 105903122 -15940734 - ID_B1 SINE B4 -54 170 80 6 1392 304 164 88 105 chr11 105903118 105903232 -15940624 - PB1D10 SINE Alu -5 112 4 6 1392 1043 252 130 11 chr11 105903267 105903528 -15940328 + B4A SINE B4 1 292 0 6 1392 353 296 75 34 chr11 105903582 105903729 -15940127 + L1M5 LINE L1 5628 5780 -344 6 1392 485 147 27 9 chr11 105904525 105904635 -15939221 + GA-rich Low_complexity Low_complexity 3 114 0 6 1392 891 222 40 0 chr11 105904681 105904857 -15938999 + B3 SINE B2 34 216 0 6 1392 375 289 99 19 chr11 105905162 105905324 -15938532 - MER5B DNA MER1_type 0 178 4 6 1392 198 362 62 31 chr11 105905906 105906003 -15937853 - MIRc SINE MIR -102 166 67 6 1393 979 137 0 20 chr11 105906474 105906623 -15937233 + B1_Mur4 SINE Alu 5 150 0 6 1393 265 100 40 0 chr11 105906623 105906673 -15937183 + (GGA)n Simple_repeat Simple_repeat 1 52 0 6 1393 433 346 90 44 chr11 105906821 105907277 -15936579 + L1M5 LINE L1 4207 4683 -1463 6 1393 315 314 58 10 chr11 105907451 105907475 -15936381 + B4 SINE B4 60 88 -204 6 1393 485 182 34 0 chr11 105907475 105907566 -15936290 + B1_Mur3 SINE Alu 1 92 -55 6 1393 650 252 14 7 chr11 105907574 105907718 -15936138 + ID_B1 SINE B4 1 145 -79 6 1393 1329 71 0 0 chr11 105908713 105908882 -15934974 - B2_Mm2 SINE B2 -26 169 1 6 1393 228 231 19 37 chr11 105908850 105908904 -15934952 - ZP3AR Satellite Satellite -140 72 20 6 1393 283 197 32 32 chr11 105909272 105909335 -15934521 + PB1D10 SINE Alu 49 111 -6 6 1393 340 244 136 82 chr11 105909772 105909919 -15933937 - RSINE1 SINE B4 -3 162 8 6 1393 335 318 37 68 chr11 105910587 105910749 -15933107 - LTR33A_ LTR ERVL -366 165 9 6 1393 621 72 0 0 chr11 105910787 105910870 -15932986 + (TG)n Simple_repeat Simple_repeat 1 83 0 6 1393 652 178 95 15 chr11 105911191 105911328 -15932528 + B1_Mus1 SINE Alu 1 148 0 6 1393 646 40 293 0 chr11 105911328 105911427 -15932429 + B1_Mm SINE Alu 20 147 0 6 1393 185 35 0 65 chr11 105911427 105911458 -15932398 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1393 1124 214 14 0 chr11 105911467 105911677 -15932179 + B3 SINE B2 1 213 -3 6 1393 587 243 0 123 chr11 105911830 105911899 -15931957 + ID_B1 SINE B4 84 149 -75 6 1393 1399 70 27 0 chr11 105911899 105912086 -15931770 - B2_Mm1t SINE B2 0 193 2 6 1393 587 243 0 123 chr11 105912086 105912171 -15931685 + ID_B1 SINE B4 150 219 -5 6 1393 345 297 80 108 chr11 105912186 105912323 -15931533 + PB1D10 SINE Alu 9 136 -13 6 1393 456 67 0 0 chr11 105912361 105912421 -15931435 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1393 662 208 153 32 chr11 105912483 105912672 -15931184 - B3 SINE B2 0 216 5 7 1393 261 0 0 0 chr11 105913426 105913455 -15930401 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1393 368 289 105 0 chr11 105913635 105913749 -15930107 - B1F SINE Alu -6 143 18 7 1393 437 181 42 0 chr11 105913751 105913823 -15930033 + ID4 SINE ID 8 82 -1 7 1393 185 0 40 0 chr11 105913831 105913856 -15930000 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 1393 876 171 7 0 chr11 105913887 105914027 -15929829 + B1_Mur3 SINE Alu 2 142 -7 7 1393 210 118 0 0 chr11 105914027 105914061 -15929795 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 7 1393 469 282 35 7 chr11 105915234 105915377 -15928479 - B1F2 SINE Alu -1 148 2 7 1393 303 284 12 12 chr11 105915416 105915498 -15928358 - ID4_ SINE ID -1 82 1 7 1393 240 324 115 14 chr11 105915746 105915882 -15927974 + MIRc SINE MIR 14 152 -124 7 1393 274 162 338 0 chr11 105919189 105919269 -15924587 - PB1D10 SINE Alu -9 108 2 7 1393 523 267 247 19 chr11 105921201 105921233 -15922623 - ID_B1 SINE B4 -27 265 175 7 1393 419 255 92 28 chr11 105921233 105921342 -15922514 - PB1D10 SINE Alu -1 116 1 7 1393 523 267 247 19 chr11 105921342 105921385 -15922471 - ID_B1 SINE B4 -27 174 38 7 1393 605 283 88 13 chr11 105921385 105921611 -15922245 - MT2A LTR ERVL -1 532 290 7 1393 328 301 152 25 chr11 105921632 105921830 -15922026 - MT2A LTR ERVL -295 238 16 7 1393 355 242 208 10 chr11 105921739 105921835 -15922021 - MTEa LTR MaLR -264 115 1 7 1393 222 150 0 48 chr11 105921836 105921878 -15921978 - ID SINE ID -184 40 1 7 1393 240 97 32 16 chr11 105921883 105921946 -15921910 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 7 1393 383 230 5 47 chr11 105921947 105922086 -15921770 - B1F1 SINE Alu 0 149 16 7 1393 874 199 0 7 chr11 105922189 105922336 -15921520 + B1_Mur1 SINE Alu 2 147 -2 7 1393 509 268 117 9 chr11 105922412 105922634 -15921222 + L1MB8 LINE L1 5424 5669 -505 7 1393 600 165 29 0 chr11 105922641 105922744 -15921112 + PB1D9 SINE Alu 5 110 -10 7 1393 430 238 157 0 chr11 105922770 105922917 -15920939 + L1MB8 LINE L1 5698 5867 -311 7 1393 598 284 77 60 chr11 105922919 105923095 -15920761 - MTD LTR MaLR -14 405 232 7 1393 513 32 0 0 chr11 105923095 105923158 -15920698 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 7 1393 598 312 87 102 chr11 105923158 105923210 -15920646 - MTD LTR MaLR -188 231 190 7 1393 939 220 31 10 chr11 105923210 105923403 -15920453 - B3 SINE B2 -15 201 5 7 1393 598 312 87 102 chr11 105923403 105923578 -15920278 - MTD LTR MaLR -230 189 20 7 1393 1682 189 82 20 chr11 105923592 105923944 -15919912 - ORR1D1 LTR MaLR 0 374 1 7 1393 243 327 88 6 chr11 105923946 105924106 -15919750 + L1MB8 LINE L1 5861 6033 -150 7 1393 231 225 127 0 chr11 105924142 105924213 -15919643 + L1MB8 LINE L1 6090 6169 -9 7 1393 1055 47 0 0 chr11 105924226 105924355 -15919501 + B1_Mm SINE Alu 19 147 0 7 1393 207 0 0 0 chr11 105924355 105924378 -15919478 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1393 425 100 28 28 chr11 105924381 105924453 -15919403 - B1_Mus1 SINE Alu -78 72 1 7 1393 362 187 0 149 chr11 105924453 105924526 -15919330 + RSINE1 SINE B4 57 113 -52 7 1393 3260 28 23 8 chr11 105924543 105924936 -15918920 + L1Md_F2 LINE L1 6172 6570 -12 7 1393 932 168 7 0 chr11 105924945 105925094 -15918762 + B1_Mur4 SINE Alu 1 150 0 7 1393 590 256 152 0 chr11 105925190 105925354 -15918502 - B3A SINE B2 -9 189 1 7 1393 692 234 7 0 chr11 105925459 105925604 -15918252 + B1_Mus1 SINE Alu 3 148 0 7 1393 1494 48 38 0 chr11 105925607 105925793 -15918063 + B2_Mm2 SINE B2 2 194 -1 7 1393 1326 82 22 0 chr11 105925954 105926136 -15917720 + B2_Mm1t SINE B2 1 186 -7 7 1393 304 284 62 0 chr11 105926201 105926282 -15917574 - MIR SINE MIR -146 116 31 7 1393 857 210 39 116 chr11 105926468 105926700 -15917156 + B3 SINE B2 1 214 -2 7 1393 279 228 0 0 chr11 105926889 105926968 -15916888 + T-rich Low_complexity Low_complexity 1 79 0 7 1393 262 284 90 0 chr11 105926975 105927042 -15916814 - B4A SINE B4 -137 155 83 7 1393 216 264 19 0 chr11 105927084 105927137 -15916719 + MIR3 SINE MIR 114 167 -41 7 1393 1237 28 7 0 chr11 105928189 105928334 -15915522 + B1_Mus2 SINE Alu 2 147 0 7 1393 202 26 105 0 chr11 105928334 105928372 -15915484 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 7 1393 1076 205 48 44 chr11 105928372 105928642 -15915214 + RMER1B Other Other 785 1055 -11 7 1393 892 222 22 11 chr11 105928711 105928893 -15914963 + B3 SINE B2 1 184 -32 7 1393 312 316 14 65 chr11 105929777 105929830 -15914026 - PB1D7 SINE Alu -1 148 102 7 1393 419 202 133 9 chr11 105929830 105929935 -15913921 - PB1D9 SINE Alu -1 119 2 7 1393 312 304 17 35 chr11 105929935 105930033 -15913823 - PB1D7 SINE Alu -15 105 8 7 1393 369 0 0 0 chr11 105930050 105930091 -15913765 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1393 1128 49 27 20 chr11 105930139 105930285 -15913571 - B1_Mus1 SINE Alu 0 148 2 7 1393 380 284 53 35 chr11 105930285 105930398 -15913458 - RSINE1 SINE B4 -46 119 5 7 1393 521 265 81 23 chr11 105930405 105930572 -15913284 - B4 SINE B4 -73 219 43 7 1393 839 60 34 17 chr11 105930572 105930690 -15913166 + B1_Mus1 SINE Alu 2 121 -27 7 1393 1298 152 4 30 chr11 105931086 105931316 -15912540 - URR1B DNA MER1_type -1 224 1 7 1393 1179 87 0 0 chr11 105931609 105931898 -15911958 + (TG)n Simple_repeat Simple_repeat 1 289 0 7 1393 331 281 0 12 chr11 105931899 105931982 -15911874 - PB1D10 SINE Alu -31 86 5 7 1393 184 366 14 0 chr11 105931995 105932066 -15911790 - MIRb SINE MIR -4 264 193 7 1393 227 253 169 0 chr11 105932091 105932174 -15911682 - MIR SINE MIR -134 128 32 7 1393 858 250 31 0 chr11 105932493 105932685 -15911171 + B3A SINE B2 1 198 0 7 1393 701 125 29 0 chr11 105932700 105932816 -15911040 + B1_Mus1 SINE Alu 22 150 0 7 1393 285 29 0 0 chr11 105933142 105933176 -15910680 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1393 279 193 18 0 chr11 105934031 105934088 -15909768 + RSINE1 SINE B4 2 59 -106 7 1393 4176 55 29 4 chr11 105935609 105936133 -15907723 + L1Md_F2 LINE L1 6046 6582 0 7 1393 422 55 0 0 chr11 105936136 105936191 -15907665 + MTA_Mm-int LTR MaLR 1044 1098 0 7 1393 2680 45 3 15 chr11 105936191 105936532 -15907324 + MTA_Mm LTR MaLR 1 337 -59 7 1393 585 276 86 49 chr11 105937028 105937295 -15906561 + B4 SINE B4 2 278 -14 7 1393 210 315 0 14 chr11 105937304 105937378 -15906478 + (CATA)n Simple_repeat Simple_repeat 4 76 0 7 1393 34 24 0 0 chr11 105937378 105937419 -15906437 + AT_rich Low_complexity Low_complexity 1 41 0 7 1393 182 191 0 21 chr11 105937481 105937529 -15906327 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 7 1393 577 232 80 0 chr11 105938298 105938436 -15905420 + B1F2 SINE Alu 1 149 0 7 1393 211 125 0 70 chr11 105938582 105938625 -15905231 + T-rich Low_complexity Low_complexity 1 40 0 7 1393 317 215 135 31 chr11 105938630 105938726 -15905130 - PB1D7 SINE Alu -11 109 4 7 1393 328 250 79 0 chr11 105938790 105938866 -15904990 - ID2 SINE ID 0 83 2 7 1393 375 213 231 0 chr11 105939102 105939210 -15904646 - B1F2 SINE Alu -16 133 1 7 1393 250 227 14 96 chr11 105939393 105939466 -15904390 - ID2 SINE ID -16 67 1 7 1393 421 273 9 9 chr11 105939473 105939584 -15904272 - PB1D10 SINE Alu -6 111 1 7 1393 1441 68 5 45 chr11 105939754 105939954 -15903902 - B2_Mm1t SINE B2 0 193 2 7 1393 252 0 0 0 chr11 105940067 105940095 -15903761 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1393 890 298 42 19 chr11 105940102 105940362 -15903494 - B4 SINE B4 -25 267 2 7 1393 698 240 6 60 chr11 105940630 105940812 -15903044 - B3A SINE B2 -1 197 26 7 1393 245 264 210 18 chr11 105940911 105941037 -15902819 + MIRc SINE MIR 28 173 -89 7 1393 481 270 72 68 chr11 105941069 105941294 -15902562 + B4A SINE B4 1 228 -64 7 1393 447 19 0 0 chr11 105942112 105942164 -15901692 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1393 387 0 0 0 chr11 105942166 105942209 -15901647 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1393 366 215 39 88 chr11 105942270 105942372 -15901484 - PB1D10 SINE Alu -19 98 2 7 1393 326 232 0 14 chr11 105942455 105942525 -15901331 - ID4 SINE ID -8 75 7 7 1393 2590 71 3 3 chr11 105942763 105943089 -15900767 - ORR1A2 LTR MaLR 0 327 2 7 1393 770 254 32 54 chr11 105943198 105943419 -15900437 - B3 SINE B2 0 216 1 7 1393 1154 82 0 40 chr11 105944030 105944182 -15899674 - B1_Mus1 SINE Alu -1 147 2 7 1393 566 194 133 44 chr11 105944239 105944374 -15899482 + B1_Mm SINE Alu 1 147 0 7 1393 230 133 156 0 chr11 105944395 105944440 -15899416 + B1F SINE Alu 97 148 -1 7 1393 342 0 0 0 chr11 105944448 105944486 -15899370 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1393 423 0 0 0 chr11 105944486 105944533 -15899323 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1393 31 104 0 0 chr11 105946059 105946174 -15897682 + GC_rich Low_complexity Low_complexity 1 115 0 7 1393 180 0 0 0 chr11 105946658 105946678 -15897178 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1393 335 243 27 0 chr11 105948183 105948257 -15895599 - ID4_ SINE ID -4 79 4 7 1393 661 196 311 24 chr11 105948315 105948482 -15895374 - B3 SINE B2 0 216 2 7 1393 396 260 42 0 chr11 105948514 105948610 -15895246 - B1F2 SINE Alu -2 147 48 7 1393 312 91 0 0 chr11 105949388 105949432 -15894424 + (TCC)n Simple_repeat Simple_repeat 3 46 0 7 1393 852 73 138 0 chr11 105949452 105949575 -15894281 + B2_Mm2 SINE B2 1 140 -55 7 1393 507 272 94 62 chr11 105949576 105949768 -15894088 - B3A SINE B2 0 198 1 7 1393 954 213 59 10 chr11 105949841 105949877 -15893979 - B3 SINE B2 -1 215 178 7 1393 393 22 0 0 chr11 105949877 105949923 -15893933 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1393 954 213 59 10 chr11 105949923 105950090 -15893766 - B3 SINE B2 -39 177 2 7 1393 708 327 82 19 chr11 105950122 105950390 -15893466 + B4A SINE B4 2 286 -6 8 1393 700 269 183 4 chr11 105950603 105950838 -15893018 + B4A SINE B4 10 286 -6 8 1393 1324 41 0 0 chr11 105950989 105951136 -15892720 - B1_Mus2 SINE Alu 0 147 1 8 1393 24 32 0 0 chr11 105951136 105951167 -15892689 + AT_rich Low_complexity Low_complexity 1 31 0 8 1393 596 252 30 0 chr11 105951213 105951348 -15892508 - B1_Mur1 SINE Alu -10 139 1 8 1393 225 220 0 0 chr11 105951371 105951421 -15892435 - ID_B1 SINE B4 0 224 175 8 1393 389 269 173 36 chr11 105951496 105951635 -15892221 - RSINE1 SINE B4 0 165 8 8 1393 555 115 31 0 chr11 105951707 105951806 -15892050 + RMER1C Other Other 1247 1338 -4 8 1393 539 171 270 0 chr11 105952020 105952131 -15891725 + B1_Mur2 SINE Alu 3 143 -6 8 1393 522 307 0 57 chr11 105952456 105952490 -15891366 - RSINE1 SINE B4 -12 153 125 8 1393 378 0 0 0 chr11 105952490 105952532 -15891324 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1393 522 307 0 57 chr11 105952532 105952656 -15891200 - RSINE1 SINE B4 -41 124 4 8 1393 192 77 0 0 chr11 105952969 105952995 -15890861 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 8 1393 366 304 89 0 chr11 105952995 105953107 -15890749 - ID_B1 SINE B4 -13 211 90 8 1393 246 286 0 143 chr11 105953438 105953536 -15890320 - MT2B2 LTR ERVL -334 250 167 8 1393 372 256 12 24 chr11 105953454 105953538 -15890318 - B1F1 SINE Alu -66 83 1 8 1393 255 122 0 0 chr11 105953542 105953591 -15890265 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1393 611 224 0 17 chr11 105953594 105953712 -15890144 - PB1D10 SINE Alu -1 116 1 8 1393 593 238 7 45 chr11 105953777 105953931 -15889925 - B1_Mur1 SINE Alu -1 148 1 8 1393 580 232 79 14 chr11 105953991 105954131 -15889725 - B1_Mur2 SINE Alu 0 149 1 8 1393 825 260 20 81 chr11 105954153 105954350 -15889506 + B3 SINE B2 2 186 -9 8 1393 234 308 46 26 chr11 105954489 105954652 -15889204 - MIRc SINE MIR 0 262 101 8 1393 252 208 0 159 chr11 105955119 105955182 -15888674 - ID4_ SINE ID -13 70 18 8 1393 395 204 158 30 chr11 105955250 105955351 -15888505 + B1_Mur1 SINE Alu 36 149 0 8 1393 188 35 35 0 chr11 105955593 105955622 -15888234 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1393 233 156 0 0 chr11 105955622 105955654 -15888202 - ID4_ SINE ID -11 72 41 8 1393 271 120 35 24 chr11 105955666 105955726 -15888130 + T-rich Low_complexity Low_complexity 29 88 0 8 1393 1236 55 7 0 chr11 105955726 105955872 -15887984 - B1_Mm SINE Alu 0 147 1 8 1393 271 120 35 24 chr11 105955872 105955896 -15887960 + T-rich Low_complexity Low_complexity 4 28 0 8 1393 355 152 15 0 chr11 105955912 105955978 -15887878 - RMER19A LTR ERVK 0 737 671 8 1393 597 63 0 0 chr11 105955976 105956055 -15887801 - RMER19A LTR ERVK -658 79 1 8 1393 328 215 693 8 chr11 105956055 105956168 -15887688 - B3 SINE B2 -24 192 2 8 1393 732 156 104 0 chr11 105956195 105956330 -15887526 - B1_Mur1 SINE Alu 0 149 1 8 1393 360 250 9 44 chr11 105956564 105956677 -15887179 - PB1D10 SINE Alu 0 117 9 8 1393 1464 89 5 5 chr11 105957447 105957638 -15886218 + B2_Mm1t SINE B2 2 192 -1 8 1393 379 245 42 68 chr11 105957649 105957767 -15886089 + PB1D10 SINE Alu 2 116 -1 8 1393 306 50 0 0 chr11 105957768 105957808 -15886048 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 8 1393 388 209 70 35 chr11 105958080 105958194 -15885662 - PB1D9 SINE Alu -2 118 1 8 1393 1283 68 0 0 chr11 105958851 105958998 -15884858 - B1_Mm SINE Alu 0 147 1 8 1393 30 0 0 0 chr11 105960128 105960158 -15883698 + AT_rich Low_complexity Low_complexity 1 30 0 8 1393 502 244 232 0 chr11 105960372 105960540 -15883316 + MER3 DNA MER1_type 2 208 -1 8 1393 1229 48 14 0 chr11 105960625 105960770 -15883086 + B1_Mus2 SINE Alu 1 147 0 8 1393 1053 156 94 0 chr11 105961357 105961549 -15882307 - B3 SINE B2 -5 211 2 8 1393 3358 160 68 132 chr11 105963043 105963805 -15880051 + RMER6D LTR ERVK 4 716 -4 8 1393 300 336 25 82 chr11 105964002 105964064 -15879792 + B4 SINE B4 45 193 -98 8 1393 578 188 0 0 chr11 105964064 105964160 -15879696 + PB1D9 SINE Alu 9 104 -16 8 1393 1239 228 83 94 chr11 105964173 105964746 -15879110 - RMER19A LTR ERVK -13 598 1 8 1393 547 193 147 67 chr11 105964769 105964952 -15878904 - ORR1B2 LTR MaLR -172 198 1 8 1393 941 237 52 0 chr11 105964958 105965169 -15878687 - ID_B1 SINE B4 0 224 3 8 1393 289 290 26 70 chr11 105965335 105965450 -15878406 + B1F SINE Alu 40 149 0 8 1393 25 0 0 0 chr11 105965621 105965646 -15878210 + AT_rich Low_complexity Low_complexity 1 25 0 8 1393 476 164 0 0 chr11 105965689 105965762 -15878094 - B3 SINE B2 -116 100 28 8 1393 278 306 51 0 chr11 105966074 105966172 -15877684 + MER46C DNA MER2_type 232 334 -4 8 1393 386 370 38 14 chr11 105966183 105966394 -15877462 - MIR SINE MIR -12 250 35 8 1393 1016 255 5 5 chr11 105966415 105966620 -15877236 - B3 SINE B2 -11 205 1 8 1393 669 25 0 0 chr11 105966682 105966761 -15877095 + (TTTTC)n Simple_repeat Simple_repeat 4 82 0 8 1393 1024 91 0 43 chr11 105966761 105966922 -15876934 - Lx LINE L1 -15 6639 6486 8 1393 1525 68 5 20 chr11 105966936 105967131 -15876725 - B2_Mm1t SINE B2 0 193 2 8 1393 589 132 0 0 chr11 105967131 105967214 -15876642 - B1_Mur2 SINE Alu -25 124 42 8 1393 235 174 0 158 chr11 105967141 105967223 -15876633 - MT2B LTR ERVL -337 264 196 8 1393 227 103 0 25 chr11 105967287 105967327 -15876529 + (GGGGA)n Simple_repeat Simple_repeat 3 41 0 8 1393 369 0 0 0 chr11 105967339 105967380 -15876476 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1393 256 309 238 0 chr11 105967403 105967529 -15876327 - RSINE1 SINE B4 -8 157 2 8 1393 367 261 179 30 chr11 105968262 105968396 -15875460 - RSINE1 SINE B4 -10 155 2 8 1393 828 299 36 40 chr11 105968439 105968690 -15875166 + Charlie1b DNA MER1_type 2 251 -272 8 1393 25 102 0 0 chr11 105968708 105968796 -15875060 + AT_rich Low_complexity Low_complexity 1 88 0 8 1393 1234 71 95 6 chr11 105969297 105969466 -15874390 - B2_Mm2 SINE B2 -8 187 4 8 1393 274 327 78 17 chr11 105969521 105969636 -15874220 - L2b LINE L2 0 3375 3254 8 1393 365 305 122 0 chr11 105969776 105969907 -15873949 - MIRb SINE MIR -12 256 110 8 1393 463 309 23 58 chr11 105969994 105970166 -15873690 - B3A SINE B2 -1 197 32 8 1393 839 224 86 6 chr11 105970246 105970421 -15873435 + B3A SINE B2 1 189 -9 8 1393 375 78 0 0 chr11 105970464 105970515 -15873341 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 1393 1196 58 7 0 chr11 105970518 105970657 -15873199 - B1_Mus1 SINE Alu -7 141 2 8 1393 610 302 11 11 chr11 105970755 105970939 -15872917 + Lx7 LINE L1 7125 7308 -388 8 1393 1578 70 0 0 chr11 105970952 105971138 -15872718 - B2_Mm1a SINE B2 -5 188 3 8 1393 1329 150 89 194 chr11 105971177 105971247 -15872609 - ORR1C2 LTR MaLR 0 384 329 8 1393 696 189 114 0 chr11 105971247 105971379 -15872477 + B1_Mus1 SINE Alu 2 148 0 8 1393 1329 150 89 194 chr11 105971379 105971737 -15872119 - ORR1C2 LTR MaLR -56 328 1 8 1393 287 250 83 9 chr11 105971743 105971852 -15872004 + Lx7 LINE L1 7562 7678 -18 8 1393 1069 210 68 8 chr11 105972420 105972686 -15871170 - ORR1D1 LTR MaLR -4 366 1 8 1393 635 196 127 32 chr11 105973564 105973722 -15870134 - B3 SINE B2 0 216 44 8 1393 224 282 128 0 chr11 105974194 105974272 -15869584 - B1F SINE Alu -21 128 41 8 1393 892 197 0 0 chr11 105974285 105974422 -15869434 - B1_Mus1 SINE Alu -11 137 1 8 1393 21 0 0 0 chr11 105974422 105974443 -15869413 + AT_rich Low_complexity Low_complexity 1 21 0 8 1393 213 291 0 0 chr11 105974481 105974536 -15869320 - B3 SINE B2 -86 130 76 8 1393 30 0 0 0 chr11 105974577 105974607 -15869249 + AT_rich Low_complexity Low_complexity 1 30 0 8 1393 490 190 540 0 chr11 105974608 105974745 -15869111 - B3 SINE B2 -5 211 1 8 1393 30 0 0 0 chr11 105974759 105974789 -15869067 + AT_rich Low_complexity Low_complexity 1 30 0 8 1393 477 233 68 122 chr11 105974863 105975010 -15868846 - B1_Mur1 SINE Alu -1 148 10 8 1393 225 0 0 0 chr11 105975028 105975053 -15868803 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1393 1271 173 225 0 chr11 105975140 105975447 -15868409 + ORR1C2 LTR MaLR 9 384 0 8 1393 841 84 139 44 chr11 105976058 105976195 -15867661 + B1_Mur4 SINE Alu 1 150 0 8 1393 235 294 0 0 chr11 105976483 105976534 -15867322 - ZP3AR Satellite Satellite -135 77 27 8 1393 414 0 0 0 chr11 105976604 105976650 -15867206 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 8 1393 412 200 59 59 chr11 105976650 105976751 -15867105 - PB1D10 SINE Alu -14 103 3 8 1393 461 268 0 35 chr11 105976772 105976888 -15866968 - PB1D10 SINE Alu 0 117 6 8 1393 24 0 0 0 chr11 105976904 105976928 -15866928 + AT_rich Low_complexity Low_complexity 1 24 0 8 1393 641 257 7 27 chr11 105977045 105977193 -15866663 - B1F1 SINE Alu -3 146 2 8 1393 789 289 25 0 chr11 105977223 105977420 -15866436 + B3 SINE B2 1 202 -14 8 1393 1725 37 0 0 chr11 105977448 105977638 -15866218 - B2_Mm1t SINE B2 -2 191 2 8 1393 848 248 60 10 chr11 105977674 105977874 -15865982 + B3 SINE B2 1 210 -6 8 1393 681 148 52 0 chr11 105977897 105978012 -15865844 + B1_Mur4 SINE Alu 29 149 -1 8 1393 470 283 13 19 chr11 105978039 105978194 -15865662 + L1ME1 LINE L1 5902 6055 -124 9 1393 591 111 100 0 chr11 105978204 105978294 -15865562 + B2_Mm2 SINE B2 3 101 -94 9 1393 720 33 0 0 chr11 105978327 105978418 -15865438 + (TG)n Simple_repeat Simple_repeat 2 92 0 9 1393 1100 106 0 0 chr11 105978418 105978559 -15865297 - B1_Mus1 SINE Alu -7 141 1 9 1393 189 0 0 0 chr11 105979313 105979334 -15864522 + (CCTTG)n Simple_repeat Simple_repeat 1 21 0 9 1393 839 209 76 0 chr11 105979742 105979914 -15863942 - ORR1C2 LTR MaLR -189 195 11 9 1393 1308 48 0 0 chr11 105980103 105980250 -15863606 - B1_Mus2 SINE Alu 0 147 1 9 1393 1974 174 68 65 chr11 105980462 105980757 -15863099 - MTC LTR MaLR -8 413 103 9 1393 692 158 57 57 chr11 105980757 105980898 -15862958 + B1_Mur4 SINE Alu 2 142 -8 9 1393 1974 174 68 65 chr11 105980898 105981014 -15862842 - MTC LTR MaLR -319 102 1 9 1393 1365 142 0 114 chr11 105981333 105981587 -15862269 + URR1B DNA MER1_type 1 225 0 9 1393 256 218 129 0 chr11 105981746 105981847 -15862009 - L1M5 LINE L1 -234 5890 5777 9 1393 472 206 77 19 chr11 105981936 105982040 -15861816 + PB1D9 SINE Alu 2 111 -9 9 1393 351 113 0 0 chr11 105982040 105982093 -15861763 + (TAG)n Simple_repeat Simple_repeat 2 54 0 9 1393 600 311 80 0 chr11 105982109 105982260 -15861596 + RSINE1 SINE B4 3 165 0 9 1393 235 143 0 0 chr11 105982279 105982314 -15861542 + PB1D9 SINE Alu 74 108 -12 9 1393 534 16 0 0 chr11 105982322 105982385 -15861471 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 9 1393 634 242 16 8 chr11 105982386 105982511 -15861345 + RSINE1 SINE B4 11 136 -29 9 1393 1112 45 15 7 chr11 105982547 105982682 -15861174 + B1_Mm SINE Alu 2 137 -10 9 1393 740 220 0 54 chr11 105982864 105983013 -15860843 + B1_Mur2 SINE Alu 2 142 -7 9 1393 312 145 0 83 chr11 105983050 105983110 -15860746 + ID2 SINE ID 3 57 -26 9 1393 250 269 0 15 chr11 105983151 105983219 -15860637 - MER5C DNA MER1_type -137 176 110 9 1393 720 238 28 68 chr11 105983434 105983467 -15860389 - ID_B1 SINE B4 0 224 193 9 1393 222 37 0 0 chr11 105983467 105983494 -15860362 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1393 1145 45 0 22 chr11 105983497 105983634 -15860222 - B1_Mus2 SINE Alu -12 135 2 9 1393 720 238 28 68 chr11 105983634 105983772 -15860084 - ID_B1 SINE B4 -32 192 56 9 1393 932 208 126 22 chr11 105983774 105983956 -15859900 - B3 SINE B2 -15 201 1 9 1393 24 0 0 0 chr11 105984508 105984532 -15859324 + AT_rich Low_complexity Low_complexity 1 24 0 9 1393 734 179 52 0 chr11 105984644 105984778 -15859078 - B3 SINE B2 -75 141 1 9 1393 714 102 0 18 chr11 105985763 105985873 -15857983 - MTC LTR MaLR -311 110 3 9 1393 736 296 20 2 chr11 105985934 105986126 -15857730 + B3A SINE B2 1 205 -11 9 1393 578 284 72 88 chr11 105986589 105986782 -15857074 - B3 SINE B2 0 198 9 9 1393 423 242 95 36 chr11 105986815 105986952 -15856904 - B1F SINE Alu 0 149 5 9 1393 426 299 36 22 chr11 105987149 105987286 -15856570 + B1F SINE Alu 4 142 -7 9 1393 788 180 20 48 chr11 105987294 105987440 -15856416 + B1_Mur1 SINE Alu 3 144 -5 9 1393 325 286 33 0 chr11 105987650 105987741 -15856115 + ID_B1 SINE B4 130 223 -1 9 1393 332 266 0 37 chr11 105987861 105987943 -15855913 - ID4 SINE ID -1 82 4 9 1393 1085 92 9 212 chr11 105988133 105988263 -15855593 + B2_Mm1a SINE B2 3 99 -94 9 1393 1803 21 0 0 chr11 105988263 105988455 -15855401 - B2_Mm1a SINE B2 0 193 2 9 1393 1085 92 9 212 chr11 105988455 105988546 -15855310 + B2_Mm1a SINE B2 100 179 -14 9 1393 372 55 0 113 chr11 105988570 105988632 -15855224 + B2_Mm2 SINE B2 47 101 -94 9 1393 180 0 0 0 chr11 105988642 105988662 -15855194 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1393 1061 102 18 29 chr11 105988679 105988850 -15855006 + B2_Mm2 SINE B2 27 195 0 9 1393 408 40 0 0 chr11 105988863 105988913 -15854943 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 9 1393 1230 68 0 0 chr11 105989088 105989235 -15854621 + B1_Mus1 SINE Alu 2 148 0 9 1393 216 97 0 0 chr11 105989235 105989266 -15854590 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1393 222 254 182 0 chr11 105989427 105989482 -15854374 + PB1 SINE Alu 33 97 -30 9 1393 21 36 0 0 chr11 105989816 105989844 -15854012 + AT_rich Low_complexity Low_complexity 1 28 0 9 1393 1324 41 0 0 chr11 105989998 105990145 -15853711 - B1_Mus2 SINE Alu 0 147 1 9 1393 491 177 270 17 chr11 105990315 105990430 -15853426 + B1_Mus1 SINE Alu 3 146 -2 9 1393 319 271 40 50 chr11 105990437 105990538 -15853318 - B1F1 SINE Alu -49 100 1 9 1393 282 275 0 68 chr11 105990472 105990546 -15853310 - B4A SINE B4 -146 146 78 9 1393 186 43 0 0 chr11 105990768 105990791 -15853065 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1393 333 345 65 53 chr11 105991335 105991580 -15852276 - L2 LINE L2 -557 2862 2615 9 1393 483 286 112 6 chr11 105991595 105991764 -15852092 + Charlie1 DNA MER1_type 2 188 -2593 9 1393 996 217 9 59 chr11 105991815 105992035 -15851821 - ID_B1 SINE B4 -12 212 4 9 1393 847 237 105 5 chr11 105992060 105992251 -15851605 + B3 SINE B2 3 212 -4 9 1393 777 219 122 25 chr11 105992273 105992470 -15851386 + B3 SINE B2 1 216 0 9 1393 1326 86 17 6 chr11 105992816 105992992 -15850864 + B2_Mm1t SINE B2 1 178 -15 9 1393 486 46 0 0 chr11 105992992 105993057 -15850799 + (GAAA)n Simple_repeat Simple_repeat 1 65 0 9 1393 1330 106 16 16 chr11 105993545 105993561 -15850295 - B2_Mm2 SINE B2 -2 193 179 9 1393 216 0 0 0 chr11 105993561 105993585 -15850271 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 9 1393 1330 106 16 16 chr11 105993585 105993759 -15850097 - B2_Mm2 SINE B2 -17 178 3 9 1393 711 171 58 4 chr11 105993772 105993937 -15849919 - B3 SINE B2 -5 190 3 9 1393 259 257 114 0 chr11 105993989 105994059 -15849797 + ID SINE ID 1 78 -146 9 1393 303 272 90 48 chr11 105994429 105994595 -15849261 - L3 LINE CR1 -154 4335 4163 9 1393 201 121 0 0 chr11 105994690 105994723 -15849133 + (CAA)n Simple_repeat Simple_repeat 2 34 0 9 1393 252 301 60 34 chr11 105994725 105994842 -15849014 + PB1D7 SINE Alu 1 120 0 9 1393 235 279 49 0 chr11 105995112 105995173 -15848683 - tRNA-Ala-GCY_ tRNA tRNA -8 67 4 9 1393 264 59 0 0 chr11 105995303 105995337 -15848519 + (TA)n Simple_repeat Simple_repeat 1 34 0 9 1393 865 125 31 0 chr11 105997178 105997306 -15846550 - B1_Mur4 SINE Alu -17 133 2 9 1393 444 197 15 109 chr11 105997306 105997332 -15846524 - MT2B LTR ERVL -447 154 142 9 1393 1344 182 68 4 chr11 105997614 105997862 -15845994 - RLTR19 LTR ERVK -54 445 182 9 1393 532 163 0 0 chr11 105997858 105997944 -15845912 + RLTR19 LTR ERVK 414 499 0 9 1393 304 253 88 0 chr11 105998124 105998215 -15845641 + PB1D10 SINE Alu 19 117 0 9 1393 683 197 96 22 chr11 105998233 105998368 -15845488 + B1_Mur1 SINE Alu 3 147 -2 9 1393 483 272 8 60 chr11 105999150 105999283 -15844573 - RSINE1 SINE B4 -39 126 1 9 1393 300 213 73 4 chr11 105999526 105999617 -15844239 - B1F1 SINE Alu -26 94 1 9 1393 216 0 0 0 chr11 105999644 105999668 -15844188 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1393 325 248 123 80 chr11 105999736 105999898 -15843958 + MT2B LTR ERVL 114 282 -319 9 1393 450 239 95 40 chr11 105999764 105999912 -15843944 + B4 SINE B4 68 223 -69 9 1393 878 128 121 16 chr11 105999791 106000000 -15843856 + B1_Mus2 SINE Alu 25 311 0 9 1393 786 97 0 0 chr11 106000001 106000114 -15843742 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 1 1393 296 264 114 70 chr11 106000202 106000316 -15843540 - PB1D9 SINE Alu -1 119 1 2 1393 1295 87 66 0 chr11 106000319 106000342 -15843514 - B2_Mm2 SINE B2 0 195 161 3 1393 180 0 0 0 chr11 106000342 106000362 -15843494 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 1393 1295 87 66 0 chr11 106000362 106000521 -15843335 - B2_Mm2 SINE B2 -35 160 2 3 1393 1199 95 12 12 chr11 106000606 106000776 -15843080 - B2_Mm1t SINE B2 -23 170 1 5 1393 779 144 98 0 chr11 106000805 106000937 -15842919 + B1_Mur2 SINE Alu 5 149 0 6 1393 1674 176 47 81 chr11 106000970 106001354 -15842502 - ORR1D1 LTR MaLR -2 372 2 7 1393 420 200 93 12 chr11 106001362 106001448 -15842408 - B1_Mur1 SINE Alu -5 144 52 8 1393 241 260 148 50 chr11 106001391 106001492 -15842364 - MT2B LTR ERVL -341 260 150 9 1393 1230 27 0 26 chr11 106001515 106001666 -15842190 - B1_Mm SINE Alu 0 147 1 1 1393 241 146 24 24 chr11 106001666 106001708 -15842148 - B2_Mm2 SINE B2 -153 42 1 1 1393 763 269 105 57 chr11 106001712 106002008 -15841848 + MER44B DNA MER2_type 105 414 -136 1 1393 255 349 73 0 chr11 106002036 106002145 -15841711 - PB1D10 SINE Alu 0 117 1 1 1393 288 0 0 0 chr11 106002185 106002217 -15841639 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1393 1222 84 78 6 chr11 106002402 106002562 -15841294 + B2_Mm1a SINE B2 1 160 -33 1 1393 555 16 0 0 chr11 106002562 106002626 -15841230 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 1 1393 1222 84 78 6 chr11 106002626 106002644 -15841212 + B2_Mm1a SINE B2 161 190 -3 1 1393 999 242 114 38 chr11 106002679 106003022 -15840834 + RMER4B LTR ERVK 49 417 -168 1 1393 468 0 0 0 chr11 106003025 106003077 -15840779 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1393 411 163 44 88 chr11 106003078 106003192 -15840664 + RMER4B LTR ERVK 468 576 -9 1 1393 727 203 43 81 chr11 106003275 106003436 -15840420 - RSINE1 SINE B4 0 165 11 1 1393 532 341 82 90 chr11 106004419 106004786 -15839070 - MLT1E1 LTR MaLR 0 654 291 2 1393 230 322 96 11 chr11 106004796 106004890 -15838966 - MLT1E1 LTR MaLR -388 172 71 2 1393 931 71 150 0 chr11 106004972 106005099 -15838757 - B1_Mus1 SINE Alu -1 147 2 2 1393 215 305 144 54 chr11 106005260 106005371 -15838485 + B4A SINE B4 8 128 -164 2 1393 616 291 6 57 chr11 106005300 106005457 -15838399 + B3A SINE B2 50 198 0 2 1393 1227 29 0 0 chr11 106005484 106005624 -15838232 + B1_Mm SINE Alu 1 140 -7 2 1393 189 0 0 0 chr11 106005628 106005649 -15838207 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1393 541 337 27 5 chr11 106005656 106005841 -15838015 + B3A SINE B2 2 190 -8 2 1393 662 268 67 115 chr11 106006032 106006302 -15837554 + MER2 DNA MER2_type 89 345 0 2 1393 214 280 60 86 chr11 106006485 106006602 -15837254 + MIR SINE MIR 37 150 -58 2 1393 272 282 84 0 chr11 106007601 106007672 -15836184 - PB1D10 SINE Alu 0 117 41 2 1393 195 42 0 0 chr11 106007789 106007813 -15836043 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1393 1082 96 0 0 chr11 106007821 106007967 -15835889 - B1_Mus2 SINE Alu 0 147 2 3 1393 1276 113 21 0 chr11 106007996 106008182 -15835674 - B2_Mm1t SINE B2 -2 191 2 3 1393 1636 36 0 15 chr11 106008445 106008640 -15835216 + B2_Mm1a SINE B2 2 193 0 3 1393 1197 275 11 3 chr11 106008698 106008983 -15834873 + B4A SINE B4 2 288 -4 3 1393 958 148 14 7 chr11 106009366 106009509 -15834347 + B1_Mur4 SINE Alu 2 145 -5 3 1393 572 270 29 7 chr11 106011229 106011367 -15832489 + B1F1 SINE Alu 1 141 -8 3 1393 462 212 176 8 chr11 106013106 106013225 -15830631 + B1_Mur1 SINE Alu 1 139 -10 3 1393 834 160 15 0 chr11 106013999 106014130 -15829726 + B1_Mur1 SINE Alu 2 134 -15 3 1393 217 49 71 24 chr11 106014154 106014196 -15829660 + (GAAAA)n Simple_repeat Simple_repeat 4 47 0 3 1393 828 237 69 20 chr11 106014205 106014407 -15829449 + B4A SINE B4 2 213 -79 4 1393 297 0 0 0 chr11 106014454 106014487 -15829369 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1393 324 64 0 0 chr11 106014487 106014534 -15829322 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1393 250 312 52 0 chr11 106014705 106014782 -15829074 + MLT1D LTR MaLR 22 102 -403 4 1393 239 375 0 40 chr11 106014923 106014998 -15828858 + ID4_ SINE ID 2 73 -10 4 1393 892 170 7 0 chr11 106018278 106018413 -15825443 - B1_Mur2 SINE Alu -12 137 2 4 1393 697 129 34 25 chr11 106019018 106019137 -15824719 + PB1D9 SINE Alu 1 120 0 4 1393 209 217 32 32 chr11 106020179 106020241 -15823615 + (CAGGG)n Simple_repeat Simple_repeat 3 64 0 4 1393 23 33 0 0 chr11 106021363 106021393 -15822463 + GC_rich Low_complexity Low_complexity 1 30 0 4 1393 203 193 47 24 chr11 106021438 106021523 -15822333 + (CCG)n Simple_repeat Simple_repeat 2 88 0 4 1393 224 132 26 0 chr11 106022928 106022966 -15820890 + PB1D9 SINE Alu 66 104 -16 5 1393 303 267 118 37 chr11 106023126 106023262 -15820594 - B1F SINE Alu 0 149 3 5 1393 1140 52 0 0 chr11 106023304 106023438 -15820418 + B1_Mus1 SINE Alu 2 135 -13 5 1393 1037 106 112 0 chr11 106023909 106024069 -15819787 + B2_Mm1t SINE B2 2 179 -14 5 1393 23 33 0 0 chr11 106024216 106024246 -15819610 + AT_rich Low_complexity Low_complexity 1 30 0 5 1393 1099 45 30 0 chr11 106024276 106024408 -15819448 + B1_Mus2 SINE Alu 1 136 -11 5 1393 270 0 0 0 chr11 106024408 106024438 -15819418 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1393 1509 197 158 14 chr11 106026380 106026740 -15817116 + MTC LTR MaLR 2 413 -8 5 1393 399 243 155 22 chr11 106027138 106027319 -15816537 - MER3 DNA MER1_type -4 205 1 5 1393 1024 66 66 0 chr11 106027512 106027649 -15816207 - B1_Mm SINE Alu 0 147 2 5 1393 683 267 90 62 chr11 106028044 106028241 -15815615 + B3A SINE B2 2 202 -14 6 1393 398 364 88 100 chr11 106028379 106028629 -15815227 + MER115 DNA Tip100 110 356 -337 6 1393 336 240 114 9 chr11 106028727 106028832 -15815024 + PB1D10 SINE Alu 1 116 -1 6 1393 1201 54 7 0 chr11 106030008 106030155 -15813701 - B1_Mus1 SINE Alu 0 148 1 6 1393 614 198 24 16 chr11 106030170 106030293 -15813563 - B1_Mur4 SINE Alu -1 149 26 6 1393 1112 77 45 51 chr11 106030364 106030541 -15813315 - B2_Mm2 SINE B2 -9 186 11 6 1393 1370 234 98 20 chr11 106030541 106030999 -15812857 + Lx8 LINE L1 6793 7286 -187 6 1393 192 125 0 0 chr11 106031062 106031094 -15812762 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1393 1188 54 0 20 chr11 106031097 106031248 -15812608 - B1_Mus1 SINE Alu 0 148 1 6 1393 329 333 122 36 chr11 106031669 106031890 -15811966 - L1M5 LINE L1 -868 5278 5039 6 1393 257 330 87 0 chr11 106031907 106032010 -15811846 + B3 SINE B2 2 113 -103 7 1393 339 224 70 12 chr11 106032940 106033026 -15810830 + PB1D7 SINE Alu 30 120 0 7 1393 1689 32 0 0 chr11 106033039 106033228 -15810628 + B2_Mm1t SINE B2 1 189 -4 7 1393 652 37 0 12 chr11 106033375 106033457 -15810399 + B2_Mm2 SINE B2 1 81 -114 7 1393 387 0 0 0 chr11 106033458 106033501 -15810355 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1393 1239 80 0 0 chr11 106033503 106033665 -15810191 - B2_Mm2 SINE B2 -31 164 3 7 1393 624 144 11 39 chr11 106033683 106033863 -15809993 + GA-rich Low_complexity Low_complexity 2 176 0 7 1393 259 130 65 0 chr11 106033872 106033918 -15809938 + ID_B1 SINE B4 176 224 0 7 1393 239 198 75 103 chr11 106034224 106034331 -15809525 + MIR SINE MIR 12 115 -147 7 1393 183 42 0 0 chr11 106034508 106034532 -15809324 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 7 1393 1189 162 98 0 chr11 106035530 106035734 -15808122 + URR1A DNA MER1_type 2 225 -1 8 1393 366 241 62 0 chr11 106036095 106036207 -15807649 + PB1D7 SINE Alu 1 119 -1 8 1393 384 158 51 26 chr11 106036443 106036521 -15807335 - PB1D10 SINE Alu -7 110 31 8 1393 405 283 19 9 chr11 106036772 106036879 -15806977 - PB1D7 SINE Alu -6 114 7 8 1393 720 185 52 0 chr11 106037105 106037240 -15806616 + B1_Mur2 SINE Alu 7 148 -1 8 1394 419 78 0 15 chr11 106037619 106037684 -15806172 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1394 714 243 99 11 chr11 106037991 106038005 -15805851 - B3 SINE B2 0 216 203 8 1394 722 186 431 20 chr11 106038005 106038302 -15805554 + MTD LTR MaLR 1 419 0 8 1394 714 243 99 11 chr11 106038302 106038478 -15805378 - B3 SINE B2 -14 202 9 8 1394 400 171 29 0 chr11 106038548 106038618 -15805238 - ID_B1 SINE B4 0 224 153 8 1394 297 0 0 0 chr11 106038630 106038663 -15805193 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1394 185 0 40 0 chr11 106038983 106039008 -15804848 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 9 1394 1655 189 107 23 chr11 106039796 106040181 -15803675 + MTD LTR MaLR 1 417 -2 9 1394 497 180 199 23 chr11 106040181 106040352 -15803504 + MTD-int LTR MaLR 2 202 -1056 9 1394 473 211 36 5 chr11 106041048 106041149 -15802707 - B1F1 SINE Alu -17 103 2 9 1394 276 200 0 0 chr11 106041170 106041230 -15802626 + CT-rich Low_complexity Low_complexity 2 61 0 9 1394 351 245 49 74 chr11 106041417 106041580 -15802276 - RSINE1 SINE B4 -6 159 1 9 1394 458 274 18 0 chr11 106041584 106041697 -15802159 - PB1D10 SINE Alu -2 115 1 9 1394 221 268 36 0 chr11 106041737 106041793 -15802063 - ID4_ SINE ID -25 58 1 9 1394 211 239 22 0 chr11 106042752 106042798 -15801058 - RSINE1 SINE B4 -115 50 4 9 1394 393 330 0 19 chr11 106042806 106042911 -15800945 - PB1D7 SINE Alu -5 115 13 9 1394 971 75 212 0 chr11 106042968 106043128 -15800728 - B2_Mm2 SINE B2 0 195 2 9 1394 224 325 12 0 chr11 106043419 106043499 -15800357 + ID4_ SINE ID 2 82 -1 1 1394 494 230 53 0 chr11 106043932 106044045 -15799811 + PB1D9 SINE Alu 2 120 0 1 1394 386 285 107 40 chr11 106044163 106044313 -15799543 - RSINE1 SINE B4 -2 163 4 1 1394 270 81 0 0 chr11 106044475 106044512 -15799344 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1 1394 1244 48 0 0 chr11 106044513 106044660 -15799196 - B1_Mus2 SINE Alu 0 147 1 1 1394 434 267 85 43 chr11 106044880 106045021 -15798835 - B1F1 SINE Alu 0 149 3 1 1394 279 0 0 0 chr11 106045327 106045358 -15798498 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1394 342 0 0 0 chr11 106045358 106045395 -15798461 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1394 420 274 0 41 chr11 106045450 106045572 -15798284 - PB1D10 SINE Alu 0 117 1 1 1394 342 167 0 0 chr11 106046412 106046466 -15797390 - PB1D7 SINE Alu 0 120 67 1 1394 219 36 0 0 chr11 106046484 106046512 -15797344 + (TTCTG)n Simple_repeat Simple_repeat 4 31 0 1 1394 316 144 66 19 chr11 106047127 106047233 -15796623 + (TATAA)n Simple_repeat Simple_repeat 5 115 0 1 1394 34 93 0 0 chr11 106047365 106047462 -15796394 + AT_rich Low_complexity Low_complexity 1 97 0 1 1394 590 240 46 8 chr11 106047547 106047677 -15796179 - RSINE1 SINE B4 -28 137 3 1 1394 596 206 116 0 chr11 106047754 106047900 -15795956 - U1 snRNA snRNA -1 164 2 1 1394 771 252 31 6 chr11 106047911 106048071 -15795785 - RSINE1 SINE B4 0 165 2 1 1394 1242 48 0 0 chr11 106048550 106048696 -15795160 - B1_Mm SINE Alu 0 147 2 1 1394 354 235 92 92 chr11 106048703 106048834 -15795022 - ID_B1 SINE B4 -1 223 93 1 1394 223 257 156 37 chr11 106048866 106048880 -15794976 - B1_Mm SINE Alu -21 126 5 1 1394 342 245 147 11 chr11 106048880 106048975 -15794881 - ID_B1 SINE B4 -31 193 86 1 1394 228 191 0 0 chr11 106049090 106049132 -15794724 - ID4_ SINE ID -29 54 13 1 1394 336 231 137 1 chr11 106049143 106049238 -15794618 - PB1D10 SINE Alu -7 113 4 1 1394 189 0 0 0 chr11 106049308 106049329 -15794527 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1394 380 248 182 0 chr11 106049336 106049457 -15794399 + ID_B1 SINE B4 79 221 -3 1 1394 370 266 17 34 chr11 106049519 106049636 -15794220 + PB1D10 SINE Alu 3 117 0 1 1394 1424 65 38 0 chr11 106049696 106049882 -15793974 - B2_Mm2 SINE B2 -1 194 2 1 1394 3681 127 143 15 chr11 106049897 106050567 -15793289 + RMER6A LTR ERVK 1 756 0 1 1394 360 200 13 13 chr11 106050766 106050842 -15793014 - ID2 SINE ID -5 78 3 1 1394 313 286 26 0 chr11 106051030 106051107 -15792749 + ID4_ SINE ID 3 81 -2 1 1394 1431 40 62 0 chr11 106051209 106051386 -15792470 + B2_Mm1a SINE B2 1 188 -5 1 1394 235 316 0 0 chr11 106051675 106051754 -15792102 + L2b LINE L2 3276 3354 -21 1 1394 360 333 85 20 chr11 106051903 106052056 -15791800 - MER5A1 DNA MER1_type 0 166 4 1 1394 40 21 0 0 chr11 106052229 106052276 -15791580 + AT_rich Low_complexity Low_complexity 1 47 0 1 1394 443 217 147 9 chr11 106052345 106052461 -15791395 - ID_B1 SINE B4 -2 222 91 1 1394 242 318 67 11 chr11 106052381 106052470 -15791386 - B1_Mus2 SINE Alu -53 94 1 1 1394 200 267 106 43 chr11 106052472 106052566 -15791290 - L3 LINE CR1 -71 4418 4319 1 1394 1151 69 0 0 chr11 106052719 106052863 -15790993 + B1_Mm SINE Alu 2 145 -2 1 1394 362 318 0 0 chr11 106053099 106053187 -15790669 + ID_B1 SINE B4 82 169 -55 1 1394 341 309 64 0 chr11 106053187 106053209 -15790647 + PB1D10 SINE Alu 1 117 0 1 1394 1068 103 0 0 chr11 106053336 106053472 -15790384 - B1_Mur3 SINE Alu -13 136 1 1 1394 366 184 0 0 chr11 106053500 106053576 -15790280 + (TATG)n Simple_repeat Simple_repeat 3 78 0 1 1394 180 0 0 0 chr11 106055679 106055699 -15788157 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1394 297 218 138 0 chr11 106055736 106055823 -15788033 - PB1D9 SINE Alu -4 116 18 1 1394 287 260 214 23 chr11 106056332 106056505 -15787351 - B3 SINE B2 -10 206 1 1 1394 302 192 346 0 chr11 106056509 106056613 -15787243 - B1F SINE Alu -9 140 1 1 1394 207 0 0 0 chr11 106057124 106057147 -15786709 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1394 1035 78 163 0 chr11 106057609 106057762 -15786094 - B2_Mm2 SINE B2 -15 180 3 1 1394 227 171 68 0 chr11 106057857 106057877 -15785979 + PB1 SINE Alu 43 120 -7 1 1394 228 191 0 0 chr11 106057877 106057919 -15785937 + ID_B1 SINE B4 175 216 -8 1 1394 269 246 29 0 chr11 106058301 106058370 -15785486 - B3A SINE B2 -126 72 2 1 1394 1036 197 20 0 chr11 106058986 106059189 -15784667 + B3 SINE B2 10 216 0 1 1394 240 250 62 12 chr11 106059190 106059271 -15784585 - MIRc SINE MIR -89 179 95 1 1394 470 261 167 0 chr11 106059320 106059458 -15784398 - RSINE1 SINE B4 -2 163 3 1 1394 385 184 75 44 chr11 106059911 106060041 -15783815 + B1_Mur4 SINE Alu 2 150 0 1 1394 615 140 4 2 chr11 106060052 106060170 -15783686 + B1_Mus1 SINE Alu 1 118 -2 1 1394 232 191 0 0 chr11 106060218 106060260 -15783596 + B2_Mm2 SINE B2 1 42 -153 1 1394 240 152 227 125 chr11 106060396 106060524 -15783332 + ID_B1 SINE B4 78 218 -6 1 1394 423 207 21 38 chr11 106060415 106060545 -15783311 + PB1D7 SINE Alu 7 127 0 1 1394 25 0 0 0 chr11 106061974 106061999 -15781857 + AT_rich Low_complexity Low_complexity 1 25 0 1 1394 587 247 45 19 chr11 106062389 106062546 -15781310 + B3A SINE B2 1 161 -37 1 1394 401 161 188 31 chr11 106062595 106062691 -15781165 - PB1D9 SINE Alu -9 111 1 1 1394 948 241 34 105 chr11 106062774 106063154 -15780702 + Lx9 LINE L1 7284 7636 -8 1 1394 573 117 29 0 chr11 106063156 106063259 -15780597 + BC1_Mm scRNA scRNA 2 107 -45 1 1394 1331 71 27 11 chr11 106064349 106064534 -15779322 + B2_Mm2 SINE B2 2 189 -6 1 1394 591 247 72 41 chr11 106064579 106064773 -15779083 - B3 SINE B2 -3 213 14 1 1394 345 138 198 12 chr11 106065096 106065177 -15778679 + B1_Mm SINE Alu 22 117 -30 1 1394 361 194 165 48 chr11 106065320 106065423 -15778433 + PB1D9 SINE Alu 6 120 0 1 1394 279 277 72 78 chr11 106065454 106065599 -15778257 - B3A SINE B2 -4 194 50 1 1394 1186 54 0 20 chr11 106065599 106065749 -15778107 - B1_Mus1 SINE Alu 0 148 2 1 1394 207 0 0 0 chr11 106066109 106066132 -15777724 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1394 901 42 0 0 chr11 106066430 106066548 -15777308 - B1_Mm SINE Alu 0 147 30 1 1394 351 299 222 21 chr11 106067039 106067278 -15776578 + MLT1E1A LTR MaLR 343 629 -51 1 1394 206 191 31 31 chr11 106067281 106067346 -15776510 + T-rich Low_complexity Low_complexity 1 65 0 1 1394 683 212 112 20 chr11 106067496 106067693 -15776163 - B3 SINE B2 -1 215 1 1 1394 919 110 58 0 chr11 106067749 106067903 -15775953 + B2_Mm2 SINE B2 31 193 -2 1 1394 233 226 91 45 chr11 106068018 106068106 -15775750 + MER21B LTR ERV1 137 228 -635 1 1394 620 298 106 75 chr11 106068124 106068239 -15775617 + MER21B LTR ERV1 302 414 -449 1 1394 396 194 28 110 chr11 106068239 106068384 -15775472 - B1F1 SINE Alu -15 134 2 1 1394 620 298 106 75 chr11 106068384 106068693 -15775163 + MER21B LTR ERV1 415 739 -124 1 1394 23 0 0 0 chr11 106070610 106070633 -15773223 + AT_rich Low_complexity Low_complexity 1 23 0 1 1394 292 302 83 19 chr11 106070717 106070825 -15773031 + RSINE1 SINE B4 4 118 -47 1 1394 1090 63 35 0 chr11 106071181 106071323 -15772533 + B1_Mus1 SINE Alu 2 148 0 1 1394 33 43 0 0 chr11 106071323 106071370 -15772486 + AT_rich Low_complexity Low_complexity 1 47 0 1 1394 766 272 10 5 chr11 106071914 106072110 -15771746 + B3 SINE B2 3 199 -17 1 1394 1669 27 0 0 chr11 106072110 106072298 -15771558 + B2_Mm1a SINE B2 2 189 -4 1 1394 623 194 64 14 chr11 106072393 106072534 -15771322 - B1_Mur3 SINE Alu -1 148 1 1 1394 813 170 0 33 chr11 106072572 106072724 -15771132 + B1_Mur3 SINE Alu 3 149 0 1 1394 355 246 67 147 chr11 106073242 106073331 -15770525 + L1MA9 LINE L1 6041 6129 -183 1 1394 704 153 79 21 chr11 106073331 106073471 -15770385 + B1_Mur2 SINE Alu 1 148 -1 1 1394 355 246 67 147 chr11 106073471 106073605 -15770251 + L1MA9 LINE L1 6130 6246 -66 1 1394 760 153 0 106 chr11 106073876 106074037 -15769819 + B1_Mur4 SINE Alu 6 149 -1 1 1394 536 183 317 0 chr11 106074209 106074373 -15769483 + B3 SINE B2 1 216 0 1 1394 347 268 43 35 chr11 106074757 106074873 -15768983 + PB1D10 SINE Alu 1 117 0 1 1394 1125 102 0 0 chr11 106075097 106075244 -15768612 + B1_Mus2 SINE Alu 1 147 0 1 1394 937 177 193 0 chr11 106075277 106075458 -15768398 + B3 SINE B2 1 216 0 1 1394 23 33 0 0 chr11 106076118 106076148 -15767708 + AT_rich Low_complexity Low_complexity 1 30 0 1 1394 500 209 146 8 chr11 106076205 106076335 -15767521 + ID_B1 SINE B4 69 216 -8 1 1394 385 210 24 12 chr11 106076365 106076447 -15767409 + PB1D9 SINE Alu 28 110 -10 1 1394 21 36 0 0 chr11 106077675 106077703 -15766153 + GC_rich Low_complexity Low_complexity 1 28 0 1 1394 406 251 103 63 chr11 106079199 106079219 -15764637 - B4A SINE B4 -44 248 158 1 1394 981 66 15 0 chr11 106079219 106079356 -15764500 - B1_Mus1 SINE Alu 0 148 10 1 1394 406 251 103 63 chr11 106079356 106079373 -15764483 - B4A SINE B4 -44 157 68 1 1394 1182 75 0 0 chr11 106079653 106079800 -15764056 - B1_Mus1 SINE Alu 0 148 2 1 1394 393 221 0 0 chr11 106079835 106079912 -15763944 - RSINE1 SINE B4 -36 129 53 1 1394 368 328 73 42 chr11 106080041 106080405 -15763451 - L2a LINE L2 -256 3170 2805 2 1394 267 79 0 0 chr11 106080598 106080636 -15763220 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1394 451 258 80 8 chr11 106081039 106081164 -15762692 - B1F SINE Alu -9 140 7 2 1394 279 268 22 35 chr11 106082601 106082722 -15761134 - ID4 SINE ID -25 127 11 2 1394 478 249 113 56 chr11 106082737 106082950 -15760906 - L1M4 LINE L1 -362 5821 5597 2 1394 469 297 25 0 chr11 106083271 106083389 -15760467 - RSINE1 SINE B4 -44 121 1 2 1394 309 248 31 110 chr11 106083400 106083527 -15760329 - L1M4 LINE L1 -573 5610 5494 2 1394 527 232 18 83 chr11 106083966 106084053 -15759803 - L1M4 LINE L1 -698 5480 5404 2 1394 359 315 18 18 chr11 106084053 106084163 -15759693 - PB1D10 SINE Alu -7 110 1 2 1394 527 232 18 83 chr11 106084163 106084244 -15759612 - L1M4 LINE L1 -775 5403 5323 2 1394 537 76 0 0 chr11 106084255 106084334 -15759522 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1394 748 214 25 6 chr11 106084334 106084494 -15759362 - B3 SINE B2 -51 165 3 2 1394 559 130 18 27 chr11 106084534 106084645 -15759211 - B1_Mur3 SINE Alu 0 149 40 2 1394 361 219 138 37 chr11 106084718 106084827 -15759029 + PB1D9 SINE Alu 1 120 0 2 1394 220 341 24 0 chr11 106085926 106086011 -15757845 - PB1D10 SINE Alu -30 87 1 2 1394 232 246 49 0 chr11 106086699 106086760 -15757096 - Lx8 LINE L1 -923 6550 6487 2 1394 566 182 78 28 chr11 106086986 106087127 -15756729 - B1_Mur2 SINE Alu 0 149 2 2 1394 862 148 50 76 chr11 106087350 106087548 -15756308 - B2_Mm2 SINE B2 -2 193 1 2 1394 610 282 80 29 chr11 106087953 106088128 -15755728 + B3 SINE B2 1 184 -32 2 1394 535 178 114 23 chr11 106088146 106088278 -15755578 + B1_Mus1 SINE Alu 4 147 -1 2 1394 234 0 0 0 chr11 106088519 106088545 -15755311 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 1394 692 265 73 20 chr11 106088558 106088762 -15755094 + B3 SINE B2 2 216 0 2 1394 1494 64 11 0 chr11 106089040 106089227 -15754629 - B2_Mm2 SINE B2 -5 190 2 2 1394 743 203 42 0 chr11 106089230 106089373 -15754483 - B1_Mur2 SINE Alu 0 149 1 2 1394 570 181 37 111 chr11 106091184 106091196 -15752660 - B1_Mur4 SINE Alu 0 150 139 2 1394 297 0 0 0 chr11 106091196 106091229 -15752627 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2 1394 570 181 37 111 chr11 106091229 106091378 -15752478 - B1_Mur4 SINE Alu -12 138 1 2 1394 479 274 40 0 chr11 106092706 106092830 -15751026 + B1F SINE Alu 13 141 -8 2 1394 394 289 43 9 chr11 106092877 106092992 -15750864 + ID_B1 SINE B4 1 119 -105 2 1394 225 167 42 0 chr11 106092993 106093041 -15750815 + PB1D10 SINE Alu 68 117 0 2 1394 538 283 35 65 chr11 106093133 106093333 -15750523 + B3A SINE B2 1 194 -4 2 1394 289 315 87 20 chr11 106093337 106093486 -15750370 - B3A SINE B2 0 198 40 2 1394 1118 52 0 0 chr11 106093767 106093901 -15749955 + B1_Mus2 SINE Alu 1 134 -13 2 1394 183 42 0 0 chr11 106093901 106093925 -15749931 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1394 524 259 52 52 chr11 106094433 106094588 -15749268 - RSINE1 SINE B4 -8 157 3 2 1394 45 0 0 18 chr11 106095281 106095318 -15748538 + AT_rich Low_complexity Low_complexity 1 37 0 2 1394 243 0 0 0 chr11 106095318 106095345 -15748511 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1394 45 0 0 18 chr11 106095345 106095363 -15748493 + AT_rich Low_complexity Low_complexity 1 18 0 2 1394 1355 81 27 0 chr11 106095365 106095551 -15748305 + B2_Mm1a SINE B2 2 192 -1 2 1394 387 293 45 51 chr11 106097281 106097457 -15746399 - B4A SINE B4 -117 175 1 2 1394 340 179 39 78 chr11 106097466 106097569 -15746287 - L1MB3 LINE L1 0 6183 6085 2 1394 721 223 7 0 chr11 106097785 106097933 -15745923 + B1F2 SINE Alu 1 149 0 2 1394 228 236 0 0 chr11 106098116 106098171 -15745685 - ID_B1 SINE B4 -1 223 169 2 1394 227 343 83 0 chr11 106098117 106098225 -15745631 - PB1D10 SINE Alu 0 117 1 2 1394 1239 48 0 0 chr11 106098678 106098825 -15745031 + B1_Mus1 SINE Alu 2 148 0 2 1394 4075 56 10 6 chr11 106098858 106099362 -15744494 + L1Md_F2 LINE L1 6077 6582 0 2 1394 389 265 78 0 chr11 106099575 106099677 -15744179 + PB1D9 SINE Alu 3 112 -8 2 1394 419 257 49 21 chr11 106100777 106100920 -15742936 - B1F SINE Alu -1 148 2 2 1394 1204 41 7 0 chr11 106101066 106101211 -15742645 + B1_Mus2 SINE Alu 2 147 0 2 1394 21 36 0 0 chr11 106101507 106101535 -15742321 + AT_rich Low_complexity Low_complexity 1 28 0 2 1394 838 184 207 0 chr11 106101541 106101720 -15742136 - B3 SINE B2 0 216 1 2 1394 674 189 0 52 chr11 106101819 106101953 -15741903 - B1_Mus2 SINE Alu -20 127 1 2 1394 318 244 0 126 chr11 106101870 106101973 -15741883 - MT2B LTR ERVL -361 240 151 2 1394 1134 181 136 7 chr11 106102028 106102307 -15741549 - MTD LTR MaLR -104 315 1 2 1394 524 154 169 8 chr11 106102316 106102434 -15741422 - L1MA5 LINE L1 -12 6288 6152 2 1394 418 312 54 54 chr11 106103403 106103552 -15740304 + RSINE1 SINE B4 3 151 -14 2 1394 327 96 0 0 chr11 106103554 106103606 -15740250 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1394 871 147 66 0 chr11 106103731 106103867 -15739989 - B1_Mus2 SINE Alu -2 145 1 2 1394 331 268 20 30 chr11 106103871 106103971 -15739885 - PB1D10 SINE Alu -1 116 18 2 1394 365 241 25 25 chr11 106104788 106104869 -15738987 - ID4 SINE ID -2 81 1 2 1394 215 273 36 0 chr11 106105045 106105100 -15738756 - ID4_ SINE ID 0 83 27 2 1394 877 203 0 0 chr11 106105437 106105585 -15738271 - B1_Mur2 SINE Alu -1 148 1 2 1394 955 190 44 0 chr11 106105709 106105914 -15737942 + URR1B DNA MER1_type 6 219 -6 2 1394 605 225 53 35 chr11 106105938 106106154 -15737702 + B3A SINE B2 1 216 0 2 1394 455 342 26 6 chr11 106106324 106106480 -15737376 + ID_B1 SINE B4 1 159 -65 2 1394 458 161 124 95 chr11 106107115 106107252 -15736604 - B1_Mus1 SINE Alu -7 141 1 2 1394 774 239 52 33 chr11 106108229 106108441 -15735415 + B3 SINE B2 1 216 0 2 1394 442 127 0 0 chr11 106108443 106108522 -15735334 - L1Md_F2 LINE L1 0 6582 6504 2 1394 183 100 0 0 chr11 106113852 106113882 -15729974 + (TTC)n Simple_repeat Simple_repeat 3 32 0 2 1394 216 287 33 33 chr11 106115237 106115327 -15728529 - L2a LINE L2 -1 3425 3336 2 1394 346 289 86 0 chr11 106115417 106115545 -15728311 + B1F1 SINE Alu 2 140 -9 2 1394 1125 62 0 0 chr11 106115697 106115842 -15728014 + B1_Mus1 SINE Alu 1 145 -3 2 1394 324 254 103 26 chr11 106116269 106116386 -15727470 + PB1 SINE Alu 2 127 0 2 1394 250 267 0 138 chr11 106116388 106116475 -15727381 + ID4_ SINE ID 6 80 -3 2 1394 257 75 0 24 chr11 106118098 106118139 -15725717 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 2 1394 750 271 14 38 chr11 106118371 106118582 -15725274 - B3 SINE B2 -10 206 1 2 1394 845 205 87 5 chr11 106118694 106118890 -15724966 - B3 SINE B2 -4 212 1 2 1394 341 286 61 0 chr11 106118902 106119000 -15724856 + PB1D7 SINE Alu 17 120 0 2 1394 472 221 73 7 chr11 106119120 106119257 -15724599 - B1_Mur1 SINE Alu -1 148 3 2 1394 396 330 0 0 chr11 106119391 106119497 -15724359 - PB1D10 SINE Alu -6 111 6 2 1394 2970 220 194 48 chr11 106119597 106120747 -15723109 - Lx9 LINE L1 -169 7475 6119 2 1394 309 68 0 0 chr11 106120753 106120797 -15723059 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1394 306 227 0 15 chr11 106120810 106120877 -15722979 - Lx9 LINE L1 -1681 5963 5898 2 1394 1443 43 32 0 chr11 106121070 106121257 -15722599 - B2_Mm2 SINE B2 -2 193 1 2 1394 1165 54 0 0 chr11 106121348 106121495 -15722361 + B1_Mus2 SINE Alu 1 147 0 2 1394 820 65 0 9 chr11 106121519 106121627 -15722229 + U6 snRNA snRNA 1 107 0 2 1394 1501 70 0 0 chr11 106121627 106121828 -15722028 + L1_Mus1 LINE L1 6367 6567 0 2 1394 545 59 337 0 chr11 106121961 106122062 -15721794 + B1_Mus1 SINE Alu 1 135 -13 2 1394 195 42 0 0 chr11 106124612 106124636 -15719220 + (CACG)n Simple_repeat Simple_repeat 4 27 0 2 1394 785 136 72 33 chr11 106126749 106126901 -15716955 - URR1B DNA MER1_type -67 158 1 2 1394 1169 41 7 0 chr11 106127336 106127481 -15716375 + B1_Mus2 SINE Alu 1 146 -1 2 1394 218 219 0 0 chr11 106130865 106130906 -15712950 + B2_Mm1t SINE B2 67 107 -86 2 1394 405 0 0 0 chr11 106130921 106130966 -15712890 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2 1394 1191 28 7 0 chr11 106131016 106131161 -15712695 + B1_Mm SINE Alu 2 147 0 2 1394 312 77 46 0 chr11 106131161 106131226 -15712630 + (CAAAA)n Simple_repeat Simple_repeat 5 72 0 2 1394 477 90 0 0 chr11 106131643 106131710 -15712146 + (GGA)n Simple_repeat Simple_repeat 1 67 0 2 1394 304 115 21 0 chr11 106131911 106131969 -15711887 + B1_Mur2 SINE Alu 82 145 -2 2 1394 1435 68 5 0 chr11 106132252 106132442 -15711414 + B2_Mm1t SINE B2 2 192 -1 2 1394 381 209 234 9 chr11 106132620 106132731 -15711125 + ID_B1 SINE B4 86 221 -3 2 1394 226 174 187 80 chr11 106132665 106132740 -15711116 + B1_Mur2 SINE Alu 67 149 0 2 1394 214 270 0 108 chr11 106132783 106132866 -15710990 + ID2 SINE ID 7 80 -3 2 1394 204 125 0 0 chr11 106133345 106133377 -15710479 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1394 1106 88 0 0 chr11 106135023 106135170 -15708686 + B1_Mus2 SINE Alu 1 147 0 2 1394 556 241 166 0 chr11 106135309 106135496 -15708360 + ID_B1 SINE B4 3 220 -4 2 1394 231 325 0 13 chr11 106135496 106135567 -15708289 - MER5A1 DNA MER1_type -35 131 61 2 1394 465 133 0 0 chr11 106135568 106135643 -15708213 - B1_Mus2 SINE Alu 0 147 73 3 1394 309 26 0 0 chr11 106136023 106136061 -15707795 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1394 777 244 0 6 chr11 106136405 106136486 -15707370 + ID SINE ID 2 81 -143 3 1394 400 291 0 60 chr11 106136486 106136603 -15707253 + PB1D10 SINE Alu 1 110 -7 3 1394 327 254 0 0 chr11 106136880 106136947 -15706909 - ORR1D1 LTR MaLR -4 370 304 3 1394 286 301 0 41 chr11 106136945 106137042 -15706814 + ID_B1 SINE B4 81 173 -51 3 1394 516 208 67 30 chr11 106136957 106137091 -15706765 + B1_Mur3 SINE Alu 11 149 0 3 1394 228 250 25 62 chr11 106137053 106137134 -15706722 - ORR1D1 LTR MaLR -29 345 268 3 1394 241 312 0 13 chr11 106137683 106137761 -15706095 - ID_B1 SINE B4 -61 163 87 3 1394 234 277 107 12 chr11 106138394 106138478 -15705378 - L2a LINE L2 -48 3378 3287 3 1394 294 95 0 0 chr11 106138483 106138525 -15705331 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1394 1115 89 0 0 chr11 106138533 106138679 -15705177 - B1_Mus2 SINE Alu 0 147 2 3 1394 180 0 0 0 chr11 106138744 106138764 -15705092 + (CCA)n Simple_repeat Simple_repeat 3 22 0 3 1394 665 182 43 28 chr11 106139681 106139822 -15704034 + ID_B1 SINE B4 82 224 0 3 1394 416 277 88 0 chr11 106140079 106140216 -15703640 + B1F1 SINE Alu 1 149 0 3 1394 246 136 0 0 chr11 106140216 106140260 -15703596 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 3 1394 207 88 0 0 chr11 106140509 106140543 -15703313 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1394 1057 43 43 0 chr11 106140543 106140682 -15703174 - B1_Mm SINE Alu 0 147 3 3 1394 252 86 0 0 chr11 106140968 106141003 -15702853 + (TCC)n Simple_repeat Simple_repeat 3 37 0 3 1394 800 170 14 7 chr11 106141009 106141151 -15702705 - B1_Mur2 SINE Alu -6 143 1 3 1394 1169 42 0 7 chr11 106141287 106141432 -15702424 + B1_Mus2 SINE Alu 2 145 -2 3 1394 486 174 0 98 chr11 106141644 106141746 -15702110 - B1_Mur1 SINE Alu -41 108 17 3 1394 1096 83 0 0 chr11 106141850 106141995 -15701861 + B1_Mus2 SINE Alu 1 145 -2 3 1394 216 0 0 0 chr11 106141995 106142019 -15701837 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1394 507 240 23 39 chr11 106142779 106142909 -15700947 - ID_B1 SINE B4 -4 220 93 3 1394 729 261 36 5 chr11 106142957 106143153 -15700703 + B3 SINE B2 3 204 -12 3 1394 521 263 30 7 chr11 106143368 106143529 -15700327 + MTE2a LTR MaLR 2 177 -202 3 1394 185 222 45 45 chr11 106143663 106143729 -15700127 - MER5A1 DNA MER1_type -62 104 39 2 1394 501 17 0 0 chr11 106144465 106144523 -15699333 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1394 1084 61 0 39 chr11 106144625 106144779 -15699077 + B1_Mus1 SINE Alu 1 148 0 3 1394 703 54 0 0 chr11 106147284 106147376 -15696480 + BC1_Mm scRNA scRNA 1 92 -60 3 1394 316 284 114 0 chr11 106148946 106149034 -15694822 - PB1D10 SINE Alu -16 101 4 3 1394 889 110 130 0 chr11 106149761 106149915 -15693941 + B2_Mm2 SINE B2 1 174 -21 3 1394 751 21 10 0 chr11 106149915 106150012 -15693844 + B1_Mus1 SINE Alu 39 136 -12 3 1394 34 24 0 0 chr11 106150022 106150063 -15693793 + AT_rich Low_complexity Low_complexity 1 41 0 3 1394 240 192 19 19 chr11 106150842 106150895 -15692961 - MamGypLTR3 LTR Gypsy -241 598 546 3 1394 2092 141 98 10 chr11 106150983 106151370 -15692486 + MTC LTR MaLR 1 421 0 3 1394 576 259 0 26 chr11 106151400 106151551 -15692305 - B1_Mur1 SINE Alu 0 149 3 3 1394 685 257 117 100 chr11 106151723 106152082 -15691774 + MTD LTR MaLR 15 379 0 3 1394 1191 54 0 0 chr11 106152386 106152533 -15691323 + B1_Mus2 SINE Alu 1 147 0 3 1394 597 28 0 0 chr11 106152567 106152638 -15691218 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1394 189 0 0 0 chr11 106152638 106152658 -15691198 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1394 263 246 0 80 chr11 106152658 106152733 -15691123 - B1F SINE Alu -11 138 70 3 1394 476 287 94 80 chr11 106152888 106153240 -15690616 + ORR1E LTR MaLR 1 357 -2 3 1394 1244 85 0 41 chr11 106153583 106153779 -15690077 - B2_Mm2 SINE B2 0 195 8 3 1394 748 185 8 0 chr11 106153780 106153910 -15689946 - B1_Mus1 SINE Alu -6 142 12 3 1394 369 182 30 0 chr11 106153952 106154018 -15689838 + PB1D10 SINE Alu 49 116 -1 3 1394 2893 21 0 0 chr11 106154025 106154362 -15689494 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1394 9721 19 3 0 chr11 106154362 106155496 -15688360 - IAPEz-int LTR ERVK 0 6481 5345 3 1394 24619 34 39 12 chr11 106155485 106158560 -15685296 - IAPEz-int LTR ERVK -3316 3165 8 3 1394 2893 21 0 0 chr11 106158560 106158897 -15684959 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1394 295 289 21 43 chr11 106158911 106159005 -15684851 + PB1D10 SINE Alu 14 105 -12 3 1394 793 242 5 49 chr11 106159386 106159590 -15684266 - B3A SINE B2 -3 195 1 3 1394 243 0 0 0 chr11 106159818 106159845 -15684011 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1394 1071 29 0 14 chr11 106159855 106159996 -15683860 - B1_Mus2 SINE Alu 0 147 9 3 1394 718 268 67 50 chr11 106160648 106160842 -15683014 - B4 SINE B4 -4 288 92 3 1394 203 0 0 36 chr11 106160842 106160870 -15682986 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1394 718 268 67 50 chr11 106160870 106160958 -15682898 - B4 SINE B4 -201 91 2 3 1394 500 186 0 0 chr11 106161045 106161131 -15682725 - PB1D7 SINE Alu -34 86 1 3 1394 266 267 30 100 chr11 106161131 106161143 -15682713 - MT2B2 LTR ERVL -341 241 151 3 1394 595 286 0 0 chr11 106163567 106163700 -15680156 - RSINE1 SINE B4 -29 136 4 3 1394 839 209 10 65 chr11 106163784 106163984 -15679872 + B3A SINE B2 9 197 -1 3 1394 486 75 0 0 chr11 106163990 106164057 -15679799 + (AGGGGG)n Simple_repeat Simple_repeat 2 68 0 3 1394 190 256 0 0 chr11 106164507 106164557 -15679299 - MIRc SINE MIR -56 152 106 3 1394 820 243 72 36 chr11 106165647 106165859 -15677997 + B4A SINE B4 2 221 -71 3 1394 684 248 46 0 chr11 106165859 106166012 -15677844 + B3A SINE B2 1 160 -38 3 1394 471 87 0 0 chr11 106166015 106166084 -15677772 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1394 267 286 71 0 chr11 106166111 106166181 -15677675 + B4 SINE B4 218 292 0 3 1394 441 195 37 0 chr11 106166569 106166651 -15677205 - B1F SINE Alu -33 116 32 3 1394 727 114 7 114 chr11 106166679 106166828 -15677028 - B1_Mur3 SINE Alu -16 133 1 3 1394 216 0 0 0 chr11 106167026 106167050 -15676806 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 3 1394 449 302 107 43 chr11 106167416 106167544 -15676312 + B4 SINE B4 90 229 -63 3 1394 333 0 0 0 chr11 106167544 106167581 -15676275 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1394 449 302 107 43 chr11 106167581 106167639 -15676217 + B4 SINE B4 230 288 -4 3 1394 393 22 0 0 chr11 106167691 106167737 -15676119 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1394 430 200 9 54 chr11 106167883 106167994 -15675862 - PB1D10 SINE Alu -11 106 1 3 1394 1144 51 0 0 chr11 106168128 106168265 -15675591 - B1_Mus2 SINE Alu -9 138 2 3 1395 950 87 7 0 chr11 106168491 106168629 -15675227 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 3 1395 332 290 9 61 chr11 106168629 106168743 -15675113 - PB1D7 SINE Alu -11 109 2 3 1395 27 29 0 0 chr11 106168953 106168987 -15674869 + AT_rich Low_complexity Low_complexity 1 34 0 3 1395 428 189 16 119 chr11 106168996 106169122 -15674734 - PB1D7 SINE Alu -2 118 6 3 1395 364 298 100 12 chr11 106170275 106170355 -15673501 + L1MEg LINE L1 1961 2013 -4229 3 1395 1193 61 7 0 chr11 106170355 106170502 -15673354 + B1_Mus1 SINE Alu 1 148 0 3 1395 364 331 59 15 chr11 106170502 106170581 -15673275 + L1MEg LINE L1 2014 2100 -4142 3 1395 443 127 0 0 chr11 106170581 106170652 -15673204 + B1_Mur4 SINE Alu 1 71 -79 3 1395 209 89 0 100 chr11 106170656 106170706 -15673150 + A-rich Low_complexity Low_complexity 3 47 0 3 1395 633 350 0 44 chr11 106170715 106170942 -15672914 + B4 SINE B4 3 219 -73 3 1395 329 219 59 50 chr11 106171011 106171112 -15672744 - PB1D10 SINE Alu -8 109 8 3 1395 261 133 42 49 chr11 106172131 106172273 -15671583 + (TCTCTG)n Simple_repeat Simple_repeat 2 142 0 3 1395 752 176 0 0 chr11 106172274 106172399 -15671457 - B1_Mus2 SINE Alu -21 126 2 3 1395 243 281 0 0 chr11 106172288 106172416 -15671440 - ORR1B1-int LTR MaLR -750 759 632 3 1395 216 0 0 0 chr11 106175424 106175448 -15668408 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1395 409 220 64 9 chr11 106176210 106176320 -15667536 - URR1B DNA MER1_type 0 225 110 3 1395 1012 149 0 0 chr11 106176631 106176779 -15667077 + B1_Mur4 SINE Alu 1 148 -2 3 1395 542 137 11 0 chr11 106176779 106176874 -15666982 + (GGA)n Simple_repeat Simple_repeat 1 96 0 3 1395 1660 47 0 0 chr11 106176930 106177123 -15666733 + B2_Mm1t SINE B2 1 193 0 3 1395 396 0 0 0 chr11 106179592 106179636 -15664220 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1395 294 87 0 0 chr11 106179636 106179681 -15664175 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1395 801 138 0 37 chr11 106179905 106180041 -15663815 + B1_Mus1 SINE Alu 6 136 -12 3 1395 204 40 0 0 chr11 106181038 106181063 -15662793 + (GGA)n Simple_repeat Simple_repeat 1 25 0 3 1395 249 246 31 0 chr11 106182481 106182546 -15661310 + MIRb SINE MIR 202 268 0 3 1395 283 271 20 20 chr11 106182607 106182705 -15661151 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 3 1395 279 0 0 0 chr11 106182705 106182736 -15661120 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1395 1056 219 91 24 chr11 106182745 106182997 -15660859 - B4 SINE B4 -23 269 1 3 1395 375 23 0 0 chr11 106183680 106183724 -15660132 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1395 924 92 130 0 chr11 106184399 106184530 -15659326 + B1_Mus1 SINE Alu 1 148 0 3 1395 189 139 0 0 chr11 106184568 106184611 -15659245 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 3 1395 634 125 18 0 chr11 106184609 106184721 -15659135 + (GGA)n Simple_repeat Simple_repeat 2 115 0 3 1395 390 301 34 20 chr11 106184839 106184985 -15658871 - B1F1 SINE Alu -1 148 1 3 1395 195 234 21 0 chr11 106184989 106185036 -15658820 - MIRc SINE MIR -114 154 107 4 1395 656 280 70 5 chr11 106186589 106186790 -15657066 - ID_B1 SINE B4 -8 216 3 4 1395 623 268 102 15 chr11 106188556 106188753 -15655103 + B4A SINE B4 35 248 -44 4 1395 297 109 0 0 chr11 106189578 106189624 -15654232 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 4 1395 224 183 0 62 chr11 106190069 106190133 -15653723 + G-rich Low_complexity Low_complexity 5 64 0 4 1395 297 219 0 0 chr11 106190271 106190344 -15653512 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1395 1006 136 0 0 chr11 106191917 106192057 -15651799 + B1_Mur4 SINE Alu 4 143 -7 4 1395 360 0 0 0 chr11 106192062 106192102 -15651754 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 1395 510 255 41 34 chr11 106192339 106192485 -15651371 - B1F1 SINE Alu 0 149 3 4 1395 279 250 186 59 chr11 106192593 106192695 -15651161 - B3 SINE B2 -100 116 2 4 1395 194 224 69 0 chr11 106192920 106192978 -15650878 - L2c LINE L2 -82 3305 3244 4 1395 188 333 177 0 chr11 106193063 106193159 -15650697 + MIR SINE MIR 113 225 -37 4 1395 304 287 126 0 chr11 106193235 106193322 -15650534 - MIR SINE MIR -67 141 44 4 1395 291 85 0 0 chr11 106194215 106194262 -15649594 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 4 1395 23 0 0 0 chr11 106194697 106194720 -15649136 + AT_rich Low_complexity Low_complexity 1 23 0 4 1395 405 204 0 0 chr11 106194985 106195122 -15648734 + (CA)n Simple_repeat Simple_repeat 2 138 0 4 1395 316 0 0 0 chr11 106195147 106195184 -15648672 + HAL1-3A_ME LINE L1 1974 2010 -848 4 1395 296 305 0 9 chr11 106195184 106195290 -15648566 + PB1D10 SINE Alu 8 112 -5 4 1395 342 269 101 9 chr11 106195844 106195953 -15647903 + PB1D7 SINE Alu 1 119 -1 4 1395 1014 203 76 0 chr11 106196154 106196183 -15647673 - B3 SINE B2 -4 212 183 4 1395 363 23 0 0 chr11 106196183 106196227 -15647629 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1395 1014 203 76 0 chr11 106196227 106196394 -15647462 - B3 SINE B2 -34 182 2 4 1395 442 265 29 14 chr11 106196413 106196551 -15647305 - B1F1 SINE Alu -1 148 9 4 1395 302 284 62 0 chr11 106197234 106197315 -15646541 + L1MC5 LINE L1 7695 7780 -181 4 1395 1399 47 14 112 chr11 106197321 106197536 -15646320 + B2_Mm2 SINE B2 2 195 0 4 1395 917 242 23 41 chr11 106197584 106197804 -15646052 + B3 SINE B2 1 216 0 4 1395 1241 34 7 0 chr11 106197911 106198057 -15645799 + B1_Mm SINE Alu 1 147 0 4 1395 769 227 112 10 chr11 106199041 106199237 -15644619 - ID_B1 SINE B4 -1 223 8 4 1395 525 32 0 0 chr11 106200138 106200201 -15643655 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1395 1635 37 16 0 chr11 106200900 106201088 -15642768 - B2_Mm2 SINE B2 -4 191 1 4 1395 244 229 14 41 chr11 106202030 106202103 -15641753 + CT-rich Low_complexity Low_complexity 4 74 0 4 1395 1074 58 0 0 chr11 106202124 106202262 -15641594 + (TTTC)n Simple_repeat Simple_repeat 1 138 0 4 1395 1595 56 0 10 chr11 106202929 106203126 -15640730 + B2_Mm2 SINE B2 1 195 0 4 1395 525 333 30 0 chr11 106204313 106204478 -15639378 - MER2 DNA MER2_type -49 296 127 4 1395 297 300 0 0 chr11 106204575 106204645 -15639211 - ID4_ SINE ID -11 72 3 4 1395 954 115 7 0 chr11 106204671 106204810 -15639046 - B1_Mus1 SINE Alu 0 148 9 4 1395 314 269 51 0 chr11 106204816 106204894 -15638962 - MER2 DNA MER2_type -263 82 1 4 1395 426 69 0 0 chr11 106206161 106206219 -15637637 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1395 855 275 35 39 chr11 106206226 106206480 -15637376 - B4 SINE B4 -30 262 10 4 1395 298 174 0 0 chr11 106207493 106207539 -15636317 + PB1D9 SINE Alu 9 54 -66 4 1395 226 222 66 66 chr11 106207596 106207702 -15636154 + RLTR25B LTR ERVK 397 502 -526 4 1395 659 111 20 0 chr11 106207640 106207739 -15636117 + B1_Mur3 SINE Alu 42 142 -7 4 1395 297 68 0 0 chr11 106207745 106207789 -15636067 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 1395 295 237 25 38 chr11 106208205 106208284 -15635572 - ID4_ SINE ID -4 79 2 4 1395 213 255 0 0 chr11 106208302 106208349 -15635507 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1395 417 267 81 0 chr11 106208524 106208660 -15635196 - B3A SINE B2 -6 210 64 4 1395 684 138 174 0 chr11 106208907 106209045 -15634811 - URR1B DNA MER1_type 0 225 64 4 1395 276 30 0 0 chr11 106209750 106209783 -15634073 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1395 228 163 0 0 chr11 106210364 106210407 -15633449 + (CGGA)n Simple_repeat Simple_repeat 3 45 0 4 1395 498 291 107 70 chr11 106211883 106212153 -15631703 + B4A SINE B4 13 292 0 4 1395 503 31 15 0 chr11 106212482 106212547 -15631309 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1395 752 200 48 0 chr11 106213049 106213194 -15630662 + B3 SINE B2 64 215 -1 4 1395 881 75 23 0 chr11 106213201 106213334 -15630522 - B1_Mus2 SINE Alu -1 146 11 4 1395 360 0 0 0 chr11 106213737 106213777 -15630079 + (TAA)n Simple_repeat Simple_repeat 3 42 0 4 1395 876 142 67 0 chr11 106213811 106213945 -15629911 + B1_Mus2 SINE Alu 3 145 -2 4 1395 1442 79 11 5 chr11 106213951 106214142 -15629714 + B2_Mm2 SINE B2 1 192 -3 4 1395 632 148 20 0 chr11 106214152 106214253 -15629603 + B1_Mur3 SINE Alu 10 112 -37 4 1395 255 61 0 0 chr11 106214311 106214344 -15629512 + (TAA)n Simple_repeat Simple_repeat 1 33 0 4 1395 534 314 87 49 chr11 106214500 106214925 -15628931 + L2 LINE L2 1829 2269 -1150 4 1395 285 347 104 42 chr11 106215168 106215427 -15628429 + L2 LINE L2 2734 3008 -411 4 1395 645 207 41 41 chr11 106215765 106215911 -15627945 + B1_Mur1 SINE Alu 2 147 -2 4 1395 327 192 0 0 chr11 106215973 106216046 -15627810 + (TCCA)n Simple_repeat Simple_repeat 2 74 0 4 1395 479 288 58 17 chr11 106216895 106217068 -15626788 - L2a LINE L2 0 3426 3247 4 1395 902 268 60 70 chr11 106217529 106217836 -15626020 + L1MC LINE L1 3709 4017 -2129 4 1395 887 125 22 14 chr11 106217836 106217974 -15625882 + B1_Mus1 SINE Alu 2 140 -8 4 1395 902 268 60 70 chr11 106217974 106218163 -15625693 + L1MC LINE L1 4018 4200 -1946 4 1395 1217 61 0 0 chr11 106218163 106218310 -15625546 + B1_Mus2 SINE Alu 1 147 0 4 1395 449 162 0 51 chr11 106218314 106218451 -15625405 + GA-rich Low_complexity Low_complexity 4 133 0 4 1395 358 305 168 7 chr11 106218451 106218606 -15625250 + L1MC LINE L1 4146 4325 -1821 4 1395 315 217 246 65 chr11 106219173 106219311 -15624545 + RSINE1 SINE B4 3 165 0 4 1395 383 300 58 8 chr11 106219322 106219443 -15624413 + B4 SINE B4 72 198 -94 4 1395 765 182 7 7 chr11 106219339 106219477 -15624379 + B1_Mur1 SINE Alu 6 143 -6 4 1395 568 236 106 0 chr11 106219510 106219633 -15624223 + B1F SINE Alu 3 138 -11 4 1395 1731 155 9 121 chr11 106219634 106220082 -15623774 + RMER10B LTR ERVL 1 398 0 4 1395 306 73 0 0 chr11 106220099 106220140 -15623716 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 4 1395 225 24 71 0 chr11 106221184 106221226 -15622630 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1395 671 275 24 57 chr11 106221236 106221448 -15622408 - ID_B1 SINE B4 -13 211 7 4 1395 206 83 0 53 chr11 106221449 106221487 -15622369 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 4 1395 399 73 0 0 chr11 106221495 106221550 -15622306 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 1395 192 77 0 0 chr11 106221553 106221579 -15622277 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 4 1395 1182 70 0 0 chr11 106221583 106221725 -15622131 - B1_Mus1 SINE Alu -6 142 1 4 1395 712 232 130 10 chr11 106221756 106221956 -15621900 - ID_B1 SINE B4 0 224 1 4 1395 273 211 0 17 chr11 106222341 106222399 -15621457 - B1F SINE Alu -2 147 91 4 1395 306 0 0 0 chr11 106222483 106222517 -15621339 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1395 509 99 12 0 chr11 106223352 106223433 -15620423 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1395 1064 182 57 26 chr11 106223482 106223674 -15620182 - B4A SINE B4 -94 198 1 4 1395 189 0 0 0 chr11 106225659 106225680 -15618176 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 4 1395 440 159 171 0 chr11 106225762 106225850 -15618006 - B1F SINE Alu -46 103 1 4 1395 435 92 0 0 chr11 106227069 106227134 -15616722 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1395 267 31 0 0 chr11 106227354 106227386 -15616470 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1395 1557 149 168 18 chr11 106228546 106228874 -15614982 + ORR1C2 LTR MaLR 1 377 -7 4 1395 864 158 68 0 chr11 106229589 106229722 -15614134 + B1_Mus1 SINE Alu 2 143 -5 4 1395 899 141 58 32 chr11 106229733 106229923 -15613933 + B2_Mm2 SINE B2 1 195 0 4 1395 6878 90 12 2 chr11 106229923 106230452 -15613404 + L1_Mus1 LINE L1 4381 4911 -972 4 1395 414 0 0 0 chr11 106230452 106230498 -15613358 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 1395 6878 90 12 2 chr11 106230498 106230966 -15612890 + L1_Mus1 LINE L1 4912 5386 -497 4 1395 8003 38 1 0 chr11 106230969 106231944 -15611912 + L1_Mus1 LINE L1 5592 6567 0 4 1395 846 138 24 12 chr11 106231968 106232136 -15611720 + G-rich Low_complexity Low_complexity 6 175 0 4 1395 682 259 85 48 chr11 106232419 106232630 -15611226 + B4A SINE B4 1 230 -62 4 1395 1285 107 23 0 chr11 106232630 106232807 -15611049 + B2_Mm2 SINE B2 1 181 -14 4 1395 682 259 85 48 chr11 106232807 106232843 -15611013 + B4A SINE B4 231 257 -35 4 1395 391 139 0 5 chr11 106232835 106232900 -15610956 + B2_Mm2 SINE B2 47 109 -107 4 1395 180 0 0 0 chr11 106232914 106232934 -15610922 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 4 1395 1002 80 0 0 chr11 106232943 106233080 -15610776 + (GAAA)n Simple_repeat Simple_repeat 4 140 0 4 1395 305 316 17 17 chr11 106233096 106233121 -15610735 + ID SINE ID 57 81 -143 4 1395 589 219 14 72 chr11 106233121 106233259 -15610597 + B1_Mur4 SINE Alu 1 130 -20 4 1395 512 337 17 46 chr11 106233286 106233460 -15610396 + B3A SINE B2 27 195 -3 4 1395 288 200 33 111 chr11 106233467 106233557 -15610299 + B4A SINE B4 210 292 0 4 1395 192 135 0 0 chr11 106233592 106233629 -15610227 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4 1395 472 312 0 0 chr11 106234437 106234546 -15609310 + ID_B1 SINE B4 104 212 -12 5 1395 246 257 138 44 chr11 106234542 106234701 -15609155 + RLTR21 LTR ERVK 1081 1254 -318 5 1395 195 42 0 0 chr11 106234714 106234738 -15609118 + (CG)n Simple_repeat Simple_repeat 2 25 0 5 1395 356 284 158 65 chr11 106234884 106234899 -15608957 - CYRA11_Mm Unknown Y-chromosome -216 401 270 5 1395 1060 157 157 0 chr11 106234899 106235090 -15608766 + URR1A DNA MER1_type 1 221 -5 5 1395 182 248 67 125 chr11 106237304 106237424 -15606432 + MIRc SINE MIR 37 149 -119 5 1395 342 0 0 0 chr11 106237893 106237931 -15605925 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1395 236 258 126 21 chr11 106238930 106239025 -15604831 - LTR84a LTR ERVL -375 382 278 5 1395 193 305 193 28 chr11 106239639 106239784 -15604072 - MIR3 SINE MIR -7 201 33 5 1395 1038 96 157 0 chr11 106240540 106240706 -15603150 + B2_Mm2 SINE B2 3 194 -1 5 1395 806 172 0 6 chr11 106240706 106240864 -15602992 + GA-rich Low_complexity Low_complexity 2 158 0 5 1395 1115 116 0 0 chr11 106240901 106241048 -15602808 + B1_Mus1 SINE Alu 2 148 0 5 1395 210 128 0 0 chr11 106241068 106241107 -15602749 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1395 384 190 0 0 chr11 106241854 106241933 -15601923 + (TAG)n Simple_repeat Simple_repeat 3 81 0 5 1395 219 226 19 0 chr11 106243156 106243209 -15600647 + MIRc SINE MIR 114 167 -101 5 1395 274 333 0 0 chr11 106245062 106245143 -15598713 + G-rich Low_complexity Low_complexity 1 81 0 5 1395 238 50 24 24 chr11 106245240 106245281 -15598575 + (TAA)n Simple_repeat Simple_repeat 1 41 0 5 1395 244 265 100 29 chr11 106245352 106245422 -15598434 - ID SINE ID -149 75 1 5 1395 384 331 50 7 chr11 106245805 106245945 -15597911 - MIR SINE MIR -35 227 82 5 1395 883 169 0 0 chr11 106246348 106246484 -15597372 + B1_Mus1 SINE Alu 1 136 -12 5 1395 216 0 0 0 chr11 106246484 106246508 -15597348 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1395 927 146 28 0 chr11 106246564 106246708 -15597148 + B1_Mur4 SINE Alu 3 150 0 5 1395 364 273 35 34 chr11 106246747 106246864 -15596992 + B1F SINE Alu 1 118 -2 5 1395 467 258 81 29 chr11 106246970 106247106 -15596750 + RSINE1 SINE B4 2 144 -21 5 1395 310 266 111 6 chr11 106247145 106247325 -15596531 + L1M5 LINE L1 4548 4749 -1397 5 1395 427 355 84 39 chr11 106247368 106247652 -15596204 + L1M5 LINE L1 4830 5126 -1020 5 1395 469 171 12 12 chr11 106247654 106247737 -15596119 + ID4_ SINE ID 1 83 0 5 1395 515 264 0 24 chr11 106247969 106248093 -15595763 + MIR SINE MIR 71 191 -71 5 1395 554 327 42 9 chr11 106248093 106248281 -15595575 - ID_B1 SINE B4 -62 230 35 5 1395 604 186 15 74 chr11 106248405 106248608 -15595248 + RLTR15 LTR ERVK 1 191 -168 5 1395 390 187 13 13 chr11 106249026 106249102 -15594754 + PB1D9 SINE Alu 17 92 -28 5 1395 432 245 45 49 chr11 106249558 106249679 -15594177 - B1F SINE Alu -4 113 1 5 1395 466 249 107 39 chr11 106249698 106249903 -15593953 - L1MB3 LINE L1 -282 5901 5683 5 1395 1252 105 10 20 chr11 106249913 106250108 -15593748 - B2_Mm1t SINE B2 0 193 1 5 1395 367 294 110 68 chr11 106250151 106250297 -15593559 - RSINE1 SINE B4 -11 154 3 5 1395 201 129 0 0 chr11 106250360 106250391 -15593465 + (C)n Simple_repeat Simple_repeat 1 31 0 5 1395 387 323 79 50 chr11 106250998 106251200 -15592656 - Tigger12c DNA MER2_type -526 208 1 5 1395 575 227 47 0 chr11 106251286 106251414 -15592442 - B1_Mus2 SINE Alu -13 134 1 5 1395 1060 229 0 29 chr11 106251533 106251740 -15592116 - B3 SINE B2 -14 202 2 5 1395 2657 127 34 15 chr11 106252105 106252514 -15591342 - MTC LTR MaLR 0 421 5 5 1395 440 164 227 136 chr11 106253007 106253183 -15590673 + B3 SINE B2 1 216 0 5 1395 537 244 25 16 chr11 106253492 106253613 -15590243 - B1F SINE Alu -8 141 20 5 1395 730 233 44 16 chr11 106253624 106253807 -15590049 - B3 SINE B2 -1 215 28 5 1395 301 145 0 52 chr11 106253926 106253984 -15589872 - B1F SINE Alu -55 94 40 5 1395 798 163 46 8 chr11 106254017 106254147 -15589709 - B1_Mur1 SINE Alu -13 136 2 5 1395 1184 116 0 87 chr11 106254294 106254502 -15589354 - B2_Mm2 SINE B2 -3 192 3 5 1395 1561 99 115 0 chr11 106255401 106255653 -15588203 - Lx2 LINE L1 -6 6991 6711 5 1395 23 0 0 0 chr11 106256440 106256463 -15587393 + AT_rich Low_complexity Low_complexity 1 23 0 5 1395 2029 145 65 14 chr11 106260605 106260961 -15582895 + ORR1D1 LTR MaLR 1 374 0 5 1395 243 87 104 42 chr11 106262362 106262410 -15581446 - PB1D10 SINE Alu 0 117 67 5 1395 686 226 14 49 chr11 106262367 106262511 -15581345 - ID_B1 SINE B4 -3 221 83 5 1395 554 323 32 0 chr11 106262560 106262715 -15581141 + RSINE1 SINE B4 4 163 -2 5 1395 233 271 78 56 chr11 106262976 106263066 -15580790 + LTR16A LTR ERVL 177 268 -183 5 1395 191 125 31 0 chr11 106263090 106263122 -15580734 - L2a LINE L2 -91 3335 3303 5 1395 687 287 23 60 chr11 106263474 106263689 -15580167 + B3 SINE B2 7 213 -3 5 1395 1081 214 14 0 chr11 106263838 106264048 -15579808 + B3 SINE B2 1 213 -3 5 1395 766 344 75 23 chr11 106264219 106264618 -15579238 + MT2A LTR ERVL 43 462 -71 5 1395 733 240 19 8 chr11 106265007 106265252 -15578604 - B4A SINE B4 -3 289 1 5 1395 214 314 89 82 chr11 106265434 106265580 -15578276 + B4A SINE B4 78 224 -68 5 1395 477 298 32 0 chr11 106265457 106265581 -15578275 + B1F SINE Alu 21 148 -1 5 1395 396 252 121 0 chr11 106265703 106265802 -15578054 - B1F1 SINE Alu -30 119 9 5 1395 390 91 0 0 chr11 106265807 106265862 -15577994 + (TATG)n Simple_repeat Simple_repeat 4 58 0 5 1395 752 262 0 32 chr11 106265875 106266029 -15577827 - RSINE1 SINE B4 -14 151 3 5 1395 537 265 17 0 chr11 106266051 106266168 -15577688 - B1_Mus1 SINE Alu -27 121 3 5 1395 1550 47 15 20 chr11 106266270 106266466 -15577390 + B2_Mm2 SINE B2 1 195 0 5 1395 1073 67 15 0 chr11 106266466 106266599 -15577257 + B1_Mus2 SINE Alu 1 136 -11 5 1395 702 136 18 0 chr11 106267497 106267607 -15576249 - B1_Mus2 SINE Alu 0 147 36 5 1395 269 200 10 150 chr11 106267531 106267631 -15576225 - RLTR25A LTR ERVK -521 582 497 5 1395 456 51 0 0 chr11 106268986 106269045 -15574811 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 1395 1264 109 11 0 chr11 106269080 106269263 -15574593 + B2_Mm1t SINE B2 3 187 -6 5 1395 1803 192 138 3 chr11 106269718 106270089 -15573767 + MTC LTR MaLR 1 421 0 5 1395 267 31 0 0 chr11 106270593 106270625 -15573231 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1395 1099 64 36 0 chr11 106270844 106270984 -15572872 + B1_Mm SINE Alu 1 145 -2 5 1395 270 0 0 0 chr11 106270986 106271016 -15572840 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5 1395 201 275 0 0 chr11 106271391 106271471 -15572385 + (CTG)n Simple_repeat Simple_repeat 3 82 0 5 1395 299 262 179 29 chr11 106271946 106272119 -15571737 + MIRb SINE MIR 50 248 -20 5 1395 1399 66 60 0 chr11 106272461 106272643 -15571213 + B2_Mm2 SINE B2 1 193 -2 5 1395 366 190 0 0 chr11 106272719 106272777 -15571079 - B1_Mur1 SINE Alu -22 127 70 5 1395 308 254 0 0 chr11 106272725 106272784 -15571072 - ID_B1 SINE B4 -25 199 141 5 1395 290 333 59 20 chr11 106273219 106273372 -15570484 + MARNA DNA Mariner 32 190 -396 5 1395 511 279 77 66 chr11 106273256 106273528 -15570328 - MARNA DNA Mariner -73 513 239 5 1395 556 125 14 28 chr11 106273530 106273653 -15570203 + B1_Mur4 SINE Alu 1 149 -1 5 1395 528 275 103 94 chr11 106273669 106273882 -15569974 + B4A SINE B4 78 292 0 5 1395 1101 132 0 6 chr11 106274259 106274426 -15569430 - B2_Mm2 SINE B2 0 195 30 5 1395 428 194 37 0 chr11 106274710 106274801 -15569055 + B3A SINE B2 1 110 -106 5 1395 543 252 141 8 chr11 106274829 106274957 -15568899 + RSINE1 SINE B4 6 150 -15 5 1395 306 0 0 0 chr11 106274959 106274993 -15568863 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1395 409 270 0 20 chr11 106275288 106275390 -15568466 + B1_Mus1 SINE Alu 16 115 -33 5 1395 273 117 197 16 chr11 106275973 106276034 -15567822 - B1_Mus2 SINE Alu -1 146 75 5 1395 544 148 0 11 chr11 106276009 106276098 -15567758 + B1_Mur2 SINE Alu 61 148 -1 5 1395 859 222 148 16 chr11 106276137 106276393 -15567463 + B4 SINE B4 2 291 -1 5 1395 735 232 58 106 chr11 106276481 106276688 -15567168 - B3A SINE B2 0 198 2 5 1395 186 118 0 0 chr11 106276692 106276726 -15567130 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1395 1587 22 22 0 chr11 106276843 106277023 -15566833 - B2_Mm1a SINE B2 -8 185 2 5 1395 673 266 12 31 chr11 106277488 106277651 -15566205 - B4A SINE B4 -10 282 123 5 1395 271 127 63 0 chr11 106277670 106277733 -15566123 - B1_Mur4 SINE Alu -2 148 82 5 1395 333 0 0 0 chr11 106278923 106278960 -15564896 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1395 228 286 63 0 chr11 106279829 106279892 -15563964 + MIR SINE MIR 117 183 -79 5 1395 388 284 37 0 chr11 106280478 106280587 -15563269 - PB1D10 SINE Alu -2 115 3 5 1395 278 214 14 0 chr11 106281912 106281982 -15561874 + ID_B1 SINE B4 154 224 0 5 1395 22 0 0 0 chr11 106282399 106282421 -15561435 + AT_rich Low_complexity Low_complexity 1 22 0 5 1395 805 164 22 15 chr11 106282707 106282843 -15561013 - B1_Mus1 SINE Alu -7 141 5 6 1395 1336 90 17 0 chr11 106283674 106283852 -15560004 + B2_Mm2 SINE B2 1 181 -14 6 1395 371 70 280 9 chr11 106283898 106284008 -15559848 + B2_Mm2 SINE B2 46 190 -5 6 1395 268 176 0 19 chr11 106284096 106284148 -15559708 - ID SINE ID -141 83 33 6 1395 329 85 102 0 chr11 106284162 106284221 -15559635 - B1_Mur2 SINE Alu -1 148 84 6 1395 262 222 27 27 chr11 106284221 106284236 -15559620 - ID_B1 SINE B4 -3 221 148 6 1395 793 236 54 25 chr11 106284242 106284446 -15559410 - B3 SINE B2 -6 210 1 6 1395 260 291 55 0 chr11 106284937 106285076 -15558780 + MLT1H1 LTR MaLR 442 586 -9 6 1395 910 108 0 0 chr11 106285093 106285223 -15558633 + B1_Mur4 SINE Alu 1 130 -20 6 1395 285 89 0 0 chr11 106285225 106285270 -15558586 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 1395 216 0 0 0 chr11 106285288 106285312 -15558544 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1395 980 309 166 43 chr11 106285341 106285754 -15558102 + MLT1H1-int LTR MaLR 1 451 -958 6 1395 345 24 0 0 chr11 106285754 106285796 -15558060 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 6 1395 980 309 166 43 chr11 106285796 106286154 -15557702 + MLT1H1-int LTR MaLR 452 866 -543 6 1395 718 209 26 22 chr11 106286157 106286354 -15557502 - B3 SINE B2 0 195 2 6 1395 297 0 0 0 chr11 106286373 106286406 -15557450 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1395 439 307 22 0 chr11 106286531 106286668 -15557188 - ID_B1 SINE B4 -2 222 83 6 1395 305 272 184 0 chr11 106286699 106286835 -15557021 + MLT1H1-int LTR MaLR 1248 1408 -1 6 1395 1451 82 0 5 chr11 106286912 106287107 -15556749 - B2_Mm2 SINE B2 0 195 2 6 1395 333 229 75 9 chr11 106287355 106287461 -15556395 + MLT1H1 LTR MaLR 443 555 0 6 1395 271 344 89 8 chr11 106288724 106288847 -15555009 + MamSINE1 SINE tRNA 3 135 -155 6 1395 198 208 0 0 chr11 106290404 106290452 -15553404 + A-rich Low_complexity Low_complexity 1 48 0 6 1395 850 170 0 33 chr11 106290753 106290905 -15552951 - B1_Mur3 SINE Alu 0 149 3 6 1395 229 241 17 0 chr11 106291914 106291972 -15551884 + MER5B DNA MER1_type 1 59 -119 6 1395 360 319 62 37 chr11 106291974 106292247 -15551609 - L1ME3A LINE L1 -19 6154 5875 6 1395 502 141 130 0 chr11 106292257 106292349 -15551507 - PB1D9 SINE Alu -6 114 11 6 1395 1314 238 76 19 chr11 106292482 106292851 -15551005 + MTD LTR MaLR 18 407 -12 6 1395 278 225 14 14 chr11 106292861 106292933 -15550923 - L1ME3A LINE L1 -487 5686 5615 6 1395 3237 122 282 0 chr11 106292934 106293509 -15550347 + RMER19A LTR ERVK 1 737 0 6 1395 661 191 57 29 chr11 106293709 106293849 -15550007 - B1_Mur2 SINE Alu -1 148 5 6 1395 679 251 6 12 chr11 106293899 106294060 -15549796 - ID_B1 SINE B4 -10 214 55 6 1395 303 306 0 0 chr11 106294535 106294607 -15549249 - ID4 SINE ID -10 73 2 6 1395 252 276 102 0 chr11 106294615 106294713 -15549143 - L1MD LINE L1 -1230 4916 4809 6 1395 661 203 32 0 chr11 106294818 106294941 -15548915 - B1_Mur1 SINE Alu -20 129 3 6 1395 662 230 78 44 chr11 106294973 106295178 -15548678 - B3 SINE B2 -2 214 3 6 1395 500 220 86 50 chr11 106295376 106295515 -15548341 - RSINE1 SINE B4 0 165 22 6 1395 343 315 76 72 chr11 106295713 106296004 -15547852 + B4 SINE B4 1 292 0 6 1395 21 0 0 0 chr11 106296048 106296069 -15547787 + AT_rich Low_complexity Low_complexity 1 21 0 6 1395 239 276 22 22 chr11 106296663 106296752 -15547104 - Lx8 LINE L1 -2 7471 7383 6 1395 274 197 46 62 chr11 106296818 106296883 -15546973 - B3A SINE B2 -134 64 1 6 1395 235 125 0 0 chr11 106296910 106296942 -15546914 - Lx8 LINE L1 -144 7329 7298 6 1395 903 225 14 45 chr11 106297277 106297500 -15546356 + B3 SINE B2 1 216 0 6 1395 24 67 0 0 chr11 106297501 106297546 -15546310 + AT_rich Low_complexity Low_complexity 1 45 0 6 1395 1100 35 0 0 chr11 106297550 106297692 -15546164 + B1_Mm SINE Alu 6 147 0 6 1395 183 250 0 0 chr11 106297695 106297743 -15546113 + A-rich Low_complexity Low_complexity 1 48 0 6 1395 1153 61 0 26 chr11 106297743 106297894 -15545962 + B1_Mus2 SINE Alu 1 147 0 6 1395 183 250 0 0 chr11 106297894 106297921 -15545935 + A-rich Low_complexity Low_complexity 49 75 0 6 1395 763 162 81 0 chr11 106297987 106298123 -15545733 + B1_Mur3 SINE Alu 3 149 0 6 1395 271 77 0 0 chr11 106298179 106298218 -15545638 - B1_Mus2 SINE Alu -108 39 1 6 1395 900 214 69 15 chr11 106298649 106298817 -15545039 + B3 SINE B2 2 181 -35 6 1395 423 0 0 0 chr11 106298817 106298864 -15544992 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1395 900 214 69 15 chr11 106298864 106298899 -15544957 + B3 SINE B2 182 215 -1 6 1395 1034 216 14 14 chr11 106298911 106299127 -15544729 - B3 SINE B2 0 216 1 6 1396 598 170 53 18 chr11 106299460 106299574 -15544282 - PB1D9 SINE Alu 0 120 3 6 1396 237 42 20 41 chr11 106299828 106299877 -15543979 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 6 1396 24 0 0 0 chr11 106300764 106300788 -15543068 + AT_rich Low_complexity Low_complexity 1 24 0 6 1396 421 270 40 0 chr11 106301127 106301227 -15542629 + PB1D10 SINE Alu 1 104 -13 6 1396 1489 53 5 21 chr11 106302222 106302415 -15541441 - B2_Mm2 SINE B2 -5 190 1 6 1396 864 49 154 0 chr11 106302428 106302551 -15541305 - B1_Mus2 SINE Alu -5 142 1 6 1396 338 243 28 9 chr11 106302551 106302659 -15541197 - Lx7 LINE L1 -22 7674 7565 6 1396 1217 249 188 21 chr11 106302662 106303039 -15540817 + Lx5 LINE L1 6594 7033 -17 6 1396 210 26 0 71 chr11 106303074 106303116 -15540740 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1396 761 256 207 14 chr11 106303212 106303507 -15540349 + RCHARR1 DNA MER1_type 25 376 -598 6 1396 358 319 8 57 chr11 106303504 106303627 -15540229 + ID_B1 SINE B4 79 195 -29 6 1396 899 219 90 100 chr11 106303693 106303828 -15540028 + RCHARR1 DNA MER1_type 355 469 -505 6 1396 1657 52 0 0 chr11 106303828 106304021 -15539835 + B2_Mm1t SINE B2 1 193 0 6 1396 899 219 90 100 chr11 106304021 106304036 -15539820 + RCHARR1 DNA MER1_type 470 476 -498 6 1396 596 221 20 20 chr11 106304036 106304184 -15539672 + B1_Mur1 SINE Alu 1 148 -1 6 1396 899 219 90 100 chr11 106304184 106304432 -15539424 + RCHARR1 DNA MER1_type 477 750 -224 6 1396 387 168 35 26 chr11 106304525 106304613 -15539243 + RCHARR1 DNA MER1_type 726 813 -161 6 1396 315 0 0 0 chr11 106304613 106304648 -15539208 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1396 387 168 35 26 chr11 106304648 106304675 -15539181 + RCHARR1 DNA MER1_type 814 842 -132 6 1396 654 170 305 12 chr11 106304675 106304842 -15539014 - B3 SINE B2 0 216 1 6 1396 614 132 0 73 chr11 106304897 106305020 -15538836 - B1_Mus2 SINE Alu 0 147 34 6 1396 828 144 79 0 chr11 106305684 106305823 -15538033 + B1_Mur4 SINE Alu 1 150 0 6 1396 287 306 148 52 chr11 106306084 106306236 -15537620 - L1ME2 LINE L1 -268 5896 5718 6 1396 1046 48 0 125 chr11 106306236 106306305 -15537551 + B1_Mus1 SINE Alu 1 65 -83 6 1396 1625 37 5 0 chr11 106306305 106306496 -15537360 - B2_Mm1t SINE B2 0 193 2 6 1396 1046 48 0 125 chr11 106306496 106306594 -15537262 + B1_Mus1 SINE Alu 66 147 -1 6 1396 327 279 112 12 chr11 106306594 106306751 -15537105 - L1ME2 LINE L1 -447 5717 5557 6 1396 904 170 14 0 chr11 106307300 106307447 -15536409 + B1_Mur4 SINE Alu 2 150 0 6 1396 189 121 0 0 chr11 106307463 106307496 -15536360 + (G)n Simple_repeat Simple_repeat 1 33 0 6 1396 1045 264 124 3 chr11 106307696 106308076 -15535780 - MER119 DNA MER1_type -6 577 152 6 1396 3060 47 39 10 chr11 106308529 106308914 -15534942 + MTA_Mm LTR MaLR 1 396 0 6 1396 1421 66 16 11 chr11 106309101 106309286 -15534570 + B2_Mm2 SINE B2 2 187 -8 6 1396 21 0 0 0 chr11 106309472 106309493 -15534363 + AT_rich Low_complexity Low_complexity 1 21 0 6 1396 211 220 0 0 chr11 106309495 106309545 -15534311 + A-rich Low_complexity Low_complexity 1 50 0 6 1396 504 48 0 0 chr11 106310280 106310343 -15533513 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1396 1285 14 7 0 chr11 106310929 106311075 -15532781 + B1_Mm SINE Alu 1 147 0 6 1396 267 54 0 0 chr11 106311090 106311127 -15532729 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1396 977 108 175 0 chr11 106311415 106311581 -15532275 - B2_Mm2 SINE B2 0 195 1 6 1396 368 247 0 0 chr11 106312084 106312157 -15531699 + BC1_Mm scRNA scRNA 1 73 -79 6 1396 420 290 27 27 chr11 106312160 106312309 -15531547 - B1F SINE Alu 0 149 1 6 1396 198 91 0 0 chr11 106312320 106312353 -15531503 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1396 443 311 107 73 chr11 106312396 106312601 -15531255 - B4A SINE B4 -6 286 75 6 1396 503 302 13 5 chr11 106312653 106312868 -15530988 - B4A SINE B4 -4 288 2 6 1396 198 0 0 0 chr11 106312881 106312903 -15530953 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 6 1396 931 122 56 21 chr11 106312954 106313096 -15530760 + B1_Mur4 SINE Alu 3 149 -1 6 1396 1336 135 68 2 chr11 106314801 106315071 -15528785 + RLTR12A LTR ERVK 3 291 -237 6 1396 1459 64 0 26 chr11 106315072 106315264 -15528592 + B2_Mm2 SINE B2 2 188 -7 6 1396 1745 16 0 0 chr11 106315272 106315465 -15528391 + B2_Mm1t SINE B2 1 193 0 6 1396 575 319 70 25 chr11 106315495 106315797 -15528059 - MLT1A LTR MaLR -5 369 34 6 1396 773 104 13 1 chr11 106316023 106316152 -15527704 - B1_Mus1 SINE Alu -2 146 14 6 1396 247 298 149 28 chr11 106316148 106316255 -15527601 + B1F SINE Alu 20 139 -10 6 1396 425 148 24 36 chr11 106316513 106316597 -15527259 - MTEa LTR MaLR -1 378 296 6 1396 328 324 19 10 chr11 106316602 106316705 -15527151 - B3 SINE B2 -26 190 87 6 1396 469 299 101 6 chr11 106316804 106316962 -15526894 - ORR1E LTR MaLR -186 173 1 6 1396 188 287 161 67 chr11 106316991 106317245 -15526611 + L2a LINE L2 3105 3382 -44 6 1396 1224 41 0 7 chr11 106317405 106317552 -15526304 + B1_Mm SINE Alu 1 146 -1 6 1396 564 299 7 0 chr11 106317607 106317744 -15526112 + ID_B1 SINE B4 84 221 -3 6 1396 803 135 21 28 chr11 106317851 106317996 -15525860 + B1_Mus2 SINE Alu 2 145 -2 6 1396 215 140 20 0 chr11 106317996 106318046 -15525810 + (CAA)n Simple_repeat Simple_repeat 1 51 0 6 1396 1104 96 11 63 chr11 106319270 106319459 -15524397 + B2_Mm1a SINE B2 1 179 -14 6 1396 319 77 359 19 chr11 106319491 106319597 -15524259 + B2_Mm2 SINE B2 47 188 -7 6 1396 1659 26 5 0 chr11 106320708 106320898 -15522958 + B2_Mm1a SINE B2 2 192 -1 7 1396 506 293 40 11 chr11 106321039 106321215 -15522641 + B3A SINE B2 2 182 -16 7 1396 1262 90 20 31 chr11 106321363 106321558 -15522298 + B2_Mm1t SINE B2 1 193 0 7 1396 227 321 74 19 chr11 106321626 106321734 -15522122 + PB1D10 SINE Alu 2 115 -2 7 1396 28 29 0 0 chr11 106321738 106321773 -15522083 + AT_rich Low_complexity Low_complexity 1 35 0 7 1396 1024 200 46 0 chr11 106321773 106321968 -15521888 - B3 SINE B2 -12 204 1 7 1396 697 291 28 6 chr11 106322081 106322257 -15521599 + B3A SINE B2 5 184 -14 7 1396 665 214 18 11 chr11 106322352 106322538 -15521318 + B3 SINE B2 1 189 -6 7 1396 410 0 20 0 chr11 106322626 106322676 -15521180 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1396 820 251 19 19 chr11 106324213 106324424 -15519432 + B3 SINE B2 6 216 0 7 1396 652 213 16 0 chr11 106324436 106324563 -15519293 + RSINE1 SINE B4 5 133 -32 7 1396 279 0 0 0 chr11 106324612 106324643 -15519213 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1396 370 200 45 108 chr11 106324643 106324800 -15519056 + B1_Mus1 SINE Alu 2 148 0 7 1396 493 139 78 0 chr11 106325222 106325318 -15518538 + B2_Mm2 SINE B2 2 106 -110 7 1396 270 164 0 0 chr11 106325636 106325691 -15518165 + CT-rich Low_complexity Low_complexity 2 56 0 7 1396 310 314 60 4 chr11 106325801 106325961 -15517895 - ID_B1 SINE B4 -9 215 2 7 1396 884 163 124 11 chr11 106326756 106326942 -15516914 + B3 SINE B2 5 211 -5 7 1396 551 266 138 15 chr11 106326969 106327164 -15516692 + ID_B1 SINE B4 2 220 -4 7 1396 761 151 8 0 chr11 106327608 106327727 -15516129 + B3 SINE B2 1 120 -96 7 1396 333 140 0 0 chr11 106327860 106327917 -15515939 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1396 696 254 35 6 chr11 106327941 106328111 -15515745 + B3 SINE B2 41 215 -1 7 1396 865 141 7 0 chr11 106328158 106328300 -15515556 - B1_Mus1 SINE Alu 0 148 6 7 1396 183 80 0 0 chr11 106328377 106328402 -15515454 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 7 1396 1041 91 133 0 chr11 106328403 106328568 -15515288 + B2_Mm1t SINE B2 2 188 -5 7 1396 1378 60 48 21 chr11 106328681 106328867 -15514989 + B2_Mm2 SINE B2 1 191 -4 7 1396 1252 35 0 0 chr11 106328980 106329123 -15514733 + B1_Mus1 SINE Alu 1 143 -5 7 1396 569 311 46 0 chr11 106329182 106329333 -15514523 + RSINE1 SINE B4 4 161 -4 7 1396 216 0 0 0 chr11 106329638 106329662 -15514194 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1396 357 250 114 7 chr11 106331110 106331259 -15512597 - MIR3 SINE MIR -30 178 14 7 1396 879 168 118 26 chr11 106331503 106331698 -15512158 - B3 SINE B2 0 216 4 7 1396 247 200 0 0 chr11 106332088 106332133 -15511723 - L1MA8 LINE L1 -191 6100 6056 7 1396 310 330 27 18 chr11 106332437 106332548 -15511308 + ID_B1 SINE B4 82 193 -31 7 1396 1090 256 59 11 chr11 106332554 106332827 -15511029 + B4A SINE B4 1 286 -6 7 1396 252 167 0 0 chr11 106332859 106332907 -15510949 + CT-rich Low_complexity Low_complexity 2 49 0 7 1396 1188 41 0 64 chr11 106333529 106333686 -15510170 + B1_Mus1 SINE Alu 2 148 0 7 1396 237 281 44 88 chr11 106333722 106333835 -15510021 + PB1D9 SINE Alu 6 113 -7 7 1396 525 187 148 9 chr11 106334277 106334385 -15509471 - B1_Mus2 SINE Alu -16 131 9 7 1396 2117 144 164 40 chr11 106334385 106334769 -15509087 + RLTR11A LTR ERVK 1 450 -78 7 1396 1474 58 26 0 chr11 106334769 106334958 -15508898 + B2_Mm2 SINE B2 1 194 -1 7 1396 2117 144 164 40 chr11 106334958 106335043 -15508813 + RLTR11A LTR ERVK 451 528 0 7 1396 1214 28 21 0 chr11 106335151 106335295 -15508561 + B1_Mus2 SINE Alu 1 147 0 7 1396 200 262 41 110 chr11 106335301 106335374 -15508482 + MIR SINE MIR 20 87 -175 7 1396 1205 61 0 0 chr11 106335556 106335703 -15508153 + B1_Mus1 SINE Alu 2 148 0 7 1396 713 171 87 54 chr11 106335722 106335874 -15507982 + B3 SINE B2 1 160 -56 7 1396 411 73 0 0 chr11 106335874 106335929 -15507927 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 7 1396 713 171 87 54 chr11 106335929 106335961 -15507895 + B3 SINE B2 161 191 -25 7 1396 252 331 68 7 chr11 106336100 106336246 -15507610 - L2c LINE L2 -301 3086 2932 7 1396 451 252 109 8 chr11 106337205 106337333 -15506523 + B1_Mur1 SINE Alu 2 142 -7 7 1396 216 0 0 0 chr11 106337389 106337413 -15506443 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1396 23 33 0 0 chr11 106337804 106337834 -15506022 + AT_rich Low_complexity Low_complexity 1 30 0 7 1396 1298 41 117 6 chr11 106338147 106338318 -15505538 + B2_Mm2 SINE B2 2 191 -4 7 1396 1212 68 0 0 chr11 106338800 106338947 -15504909 + B1_Mus2 SINE Alu 1 147 0 7 1396 225 0 0 0 chr11 106338947 106338972 -15504884 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1396 273 192 275 25 chr11 106338972 106339052 -15504804 - PB1D10 SINE Alu -17 100 1 7 1396 1306 266 7 0 chr11 106339052 106339341 -15504515 - L1MA6 LINE L1 -319 5981 5691 7 1396 1151 106 12 0 chr11 106339642 106339797 -15504059 + B2_Mm2 SINE B2 1 157 -38 7 1396 230 0 0 32 chr11 106339797 106339828 -15504028 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 7 1396 1151 106 12 0 chr11 106339828 106339842 -15504014 + B2_Mm2 SINE B2 158 171 -24 7 1396 310 307 89 51 chr11 106339870 106340028 -15503828 - MER5B DNA MER1_type -8 170 7 7 1396 523 138 106 0 chr11 106340688 106340782 -15503074 + B1_Mus1 SINE Alu 33 136 -12 7 1396 234 0 0 0 chr11 106340783 106340809 -15503047 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1396 188 265 20 0 chr11 106341043 106341092 -15502764 + L2c LINE L2 3150 3199 -188 7 1396 305 336 91 58 chr11 106341865 106342108 -15501748 - MARNA DNA Mariner -104 482 232 7 1396 513 214 43 51 chr11 106342244 106342382 -15501474 + B1_Mur1 SINE Alu 13 149 0 7 1396 409 294 6 89 chr11 106342401 106342415 -15501441 + ID_B1 SINE B4 76 142 -82 7 1396 684 198 0 31 chr11 106342415 106342545 -15501311 + B1_Mm SINE Alu 10 135 -12 7 1396 409 294 6 89 chr11 106342545 106342558 -15501298 + ID_B1 SINE B4 143 219 -5 7 1396 1117 56 0 40 chr11 106342716 106342864 -15500992 - B1_Mus1 SINE Alu -2 146 5 7 1396 1225 181 39 5 chr11 106343513 106343718 -15500138 + B3 SINE B2 4 215 -1 7 1396 1008 76 53 0 chr11 106343731 106343862 -15499994 + B1_Mus2 SINE Alu 1 138 -9 7 1396 303 286 43 86 chr11 106343956 106344166 -15499690 + L1MB8 LINE L1 5384 5584 -594 7 1396 517 310 21 38 chr11 106344399 106344634 -15499222 + L1MB8 LINE L1 5905 6135 -43 7 1396 204 40 0 0 chr11 106344784 106344809 -15499047 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 7 1396 932 158 0 20 chr11 106344809 106344948 -15498908 - B1_Mur4 SINE Alu -9 141 4 7 1396 288 0 0 0 chr11 106345001 106345033 -15498823 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1396 892 223 16 16 chr11 106345885 106346072 -15497784 - B3 SINE B2 0 216 30 7 1396 930 103 73 0 chr11 106346072 106346208 -15497648 - B1_Mus1 SINE Alu 0 148 3 7 1396 348 292 99 35 chr11 106347042 106347184 -15496672 - MIRb SINE MIR -116 152 2 7 1396 205 195 0 0 chr11 106347695 106347736 -15496120 + A-rich Low_complexity Low_complexity 1 41 0 7 1396 761 263 20 10 chr11 106350064 106350264 -15493592 + ID_B1 SINE B4 4 205 -19 7 1396 23 0 0 0 chr11 106350700 106350723 -15493133 + GC_rich Low_complexity Low_complexity 1 23 0 7 1396 289 331 97 45 chr11 106350811 106350966 -15492890 + RSINE1 SINE B4 2 164 -1 7 1396 28 29 0 0 chr11 106350981 106351016 -15492840 + AT_rich Low_complexity Low_complexity 1 35 0 7 1396 528 251 155 17 chr11 106351038 106351212 -15492644 + B3A SINE B2 1 198 0 7 1396 508 259 15 0 chr11 106351258 106351389 -15492467 + ID_B1 SINE B4 84 216 -8 7 1396 1271 106 5 16 chr11 106351928 106352119 -15491737 - B2_Mm1a SINE B2 -3 190 2 7 1396 1248 41 0 7 chr11 106352147 106352295 -15491561 + B1_Mus1 SINE Alu 2 148 0 7 1396 743 231 12 55 chr11 106352358 106352523 -15491333 + RSINE1 SINE B4 8 165 0 7 1396 207 299 90 13 chr11 106352774 106352852 -15491004 + MER5A DNA MER1_type 73 156 -33 7 1396 306 0 0 0 chr11 106353030 106353064 -15490792 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1396 693 122 0 0 chr11 106353091 106353189 -15490667 - B3 SINE B2 -118 98 1 7 1396 337 100 348 18 chr11 106353212 106353324 -15490532 - B2_Mm2 SINE B2 0 195 47 7 1396 1254 96 16 22 chr11 106353354 106353536 -15490320 - B2_Mm1t SINE B2 -12 181 1 7 1396 1352 69 35 0 chr11 106353537 106353711 -15490145 - B2_Mm2 SINE B2 -13 182 3 7 1396 207 0 0 0 chr11 106353720 106353743 -15490113 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1396 578 103 0 0 chr11 106353743 106353821 -15490035 - B1_Mus2 SINE Alu -8 139 62 7 1396 261 0 0 0 chr11 106353951 106353980 -15489876 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1396 476 300 0 0 chr11 106353980 106354100 -15489756 - RSINE1 SINE B4 -43 122 3 7 1396 743 67 19 0 chr11 106354189 106354294 -15489562 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 7 1396 247 273 18 0 chr11 106354652 106354707 -15489149 - ID4 SINE ID -14 69 14 7 1396 411 306 16 8 chr11 106354867 106354992 -15488864 + B1F SINE Alu 5 130 -19 7 1396 346 290 43 0 chr11 106355074 106355167 -15488689 + ID_B1 SINE B4 124 220 -4 7 1396 1295 112 0 21 chr11 106355174 106355365 -15488491 + B2_Mm2 SINE B2 3 189 -6 7 1396 773 231 7 13 chr11 106355495 106355644 -15488212 - B1_Mur3 SINE Alu 0 149 2 7 1396 775 262 25 6 chr11 106355653 106355814 -15488042 - RSINE1 SINE B4 0 165 2 7 1396 543 250 117 129 chr11 106355939 106356187 -15487669 - MER2 DNA MER2_type -14 331 87 8 1396 1152 102 6 18 chr11 106356188 106356199 -15487657 - B2_Mm1t SINE B2 -23 170 161 8 1396 279 0 0 0 chr11 106356199 106356230 -15487626 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1396 1152 102 6 18 chr11 106356230 106356387 -15487469 - B2_Mm1t SINE B2 -33 160 4 8 1396 736 242 59 0 chr11 106357048 106357201 -15486655 - ID_B1 SINE B4 -17 207 46 8 1396 382 310 48 134 chr11 106357257 106357355 -15486501 + B4A SINE B4 2 90 -202 8 1396 1445 75 16 5 chr11 106357355 106357542 -15486314 - B2_Mm2 SINE B2 -5 190 2 8 1396 382 310 48 134 chr11 106357542 106357681 -15486175 + B4A SINE B4 91 214 -78 8 1396 711 178 95 15 chr11 106357681 106357818 -15486038 + B1_Mur4 SINE Alu 2 149 -1 8 1396 382 310 48 134 chr11 106357818 106357847 -15486009 + B4A SINE B4 215 246 -46 8 1396 1235 77 70 22 chr11 106358009 106358194 -15485662 + B2_Mm2 SINE B2 2 195 0 8 1396 207 0 0 0 chr11 106358298 106358321 -15485535 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1396 1049 47 0 0 chr11 106358325 106358454 -15485402 - B1_Mus1 SINE Alu -5 143 15 8 1396 198 0 0 0 chr11 106358456 106358478 -15485378 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1396 562 288 75 34 chr11 106358478 106358744 -15485112 + L1MB8 LINE L1 5879 6155 -23 8 1396 955 234 33 14 chr11 106358760 106358972 -15484884 + B3 SINE B2 1 216 0 8 1396 1323 106 5 16 chr11 106358972 106359163 -15484693 + B2_Mm1t SINE B2 2 190 -3 8 1396 277 266 37 0 chr11 106359186 106359272 -15484584 + L1MD LINE L1 2313 2401 -3745 8 1396 1234 65 141 0 chr11 106359272 106359442 -15484414 + B2_Mm2 SINE B2 2 195 0 8 1396 226 301 65 0 chr11 106359442 106359465 -15484391 + L1MD LINE L1 2402 2429 -3717 8 1396 228 275 0 210 chr11 106359642 106359780 -15484076 - MER20 DNA MER1_type 0 219 111 8 1396 629 314 137 43 chr11 106359996 106360419 -15483437 + MLT1F LTR MaLR 3 465 -83 8 1396 308 203 62 0 chr11 106360519 106360583 -15483273 - B3A SINE B2 -51 147 80 8 1396 569 256 8 0 chr11 106360645 106360770 -15483086 - ID_B1 SINE B4 -13 211 86 8 1396 287 238 142 12 chr11 106360786 106360911 -15482945 + L1MD LINE L1 2935 3081 -3065 8 1396 1134 68 0 26 chr11 106360911 106361062 -15482794 + B1_Mm SINE Alu 1 147 0 8 1396 287 238 142 12 chr11 106361062 106361098 -15482758 + L1MD LINE L1 3082 3116 -3030 8 1396 189 0 0 0 chr11 106361165 106361186 -15482670 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1396 388 245 36 36 chr11 106361236 106361346 -15482510 + PB1D10 SINE Alu 6 115 -2 8 1396 366 308 112 40 chr11 106361407 106361711 -15482145 - L1M5 LINE L1 -356 5823 5498 8 1396 214 265 41 0 chr11 106361772 106361821 -15482035 - B1F SINE Alu -97 52 2 8 1396 255 31 0 0 chr11 106361975 106362007 -15481849 + (C)n Simple_repeat Simple_repeat 1 32 0 8 1396 354 38 13 0 chr11 106363078 106363131 -15480725 - B1_Mus2 SINE Alu -9 138 55 8 1396 521 225 443 6 chr11 106365140 106365308 -15478548 - B4A SINE B4 -43 249 7 8 1396 556 105 0 0 chr11 106365336 106365412 -15478444 + B2_Mm2 SINE B2 2 77 -118 8 1396 248 259 74 218 chr11 106365412 106365448 -15478408 + B4A SINE B4 2 134 -158 8 1396 283 256 57 57 chr11 106365448 106365572 -15478284 + MT2B LTR ERVL 155 278 -323 8 1396 647 182 89 22 chr11 106365463 106365598 -15478258 + B1_Mur4 SINE Alu 6 149 -1 8 1396 248 259 74 218 chr11 106365572 106365593 -15478263 + B4A SINE B4 135 221 -71 8 1396 1058 32 0 0 chr11 106365880 106366005 -15477851 - B1_Mus1 SINE Alu -7 141 17 8 1396 1082 103 0 0 chr11 106366382 106366528 -15477328 + B1_Mus1 SINE Alu 3 148 0 8 1396 336 287 65 0 chr11 106366551 106366659 -15477197 + RSINE1 SINE B4 3 117 -48 8 1396 708 0 33 0 chr11 106366659 106366751 -15477105 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1396 791 242 171 12 chr11 106366762 106367013 -15476843 + B4 SINE B4 1 291 -1 8 1396 189 0 0 0 chr11 106367126 106367147 -15476709 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 8 1396 369 0 0 0 chr11 106367189 106367230 -15476626 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 8 1396 1078 121 6 0 chr11 106367231 106367388 -15476468 - B2_Mm2 SINE B2 -37 158 1 8 1396 302 231 306 0 chr11 106367407 106367515 -15476341 - B1_Mur2 SINE Alu -8 141 1 8 1396 387 159 58 0 chr11 106367569 106367638 -15476218 + ID2 SINE ID 1 73 -10 8 1396 325 298 33 40 chr11 106368742 106368868 -15474988 - PB1D10 SINE Alu -23 126 7 8 1396 329 225 70 0 chr11 106369303 106369374 -15474482 + B1F1 SINE Alu 1 76 -73 8 1396 1143 82 0 0 chr11 106369556 106369703 -15474153 - B1_Mus1 SINE Alu -1 147 1 8 1396 241 91 68 0 chr11 106369776 106369820 -15474036 + ORR1B1 LTR MaLR 1 47 -347 8 1396 257 154 0 8 chr11 106369807 106369869 -15473987 + ORR1B1 LTR MaLR 8 47 -347 8 1396 274 131 0 8 chr11 106369871 106369933 -15473923 + ORR1B1 LTR MaLR 8 47 -347 8 1396 273 131 0 8 chr11 106369935 106369997 -15473859 + ORR1B1 LTR MaLR 8 47 -347 8 1396 263 191 0 23 chr11 106369999 106370061 -15473795 + ORR1D1-int LTR MaLR 1892 1940 -23 8 1396 228 170 42 21 chr11 106370063 106370111 -15473745 + ORR1B1-int LTR MaLR 1892 1940 -23 8 1396 1967 125 152 0 chr11 106370162 106370498 -15473358 + ORR1B1 LTR MaLR 8 394 0 8 1396 246 222 0 0 chr11 106370828 106370882 -15472974 + (ATG)n Simple_repeat Simple_repeat 3 56 0 8 1396 1276 73 84 6 chr11 106371233 106371412 -15472444 + B2_Mm2 SINE B2 3 195 0 8 1396 1139 88 0 0 chr11 106371412 106371558 -15472298 + B1_Mus2 SINE Alu 1 147 0 8 1396 1111 54 13 26 chr11 106371624 106371636 -15472220 - B1_Mur4 SINE Alu 0 150 140 8 1396 201 39 0 0 chr11 106371636 106371662 -15472194 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1396 1111 54 13 26 chr11 106371662 106371800 -15472056 - B1_Mur4 SINE Alu -11 139 2 8 1396 986 96 0 7 chr11 106372398 106372535 -15471321 - B2_Mm2 SINE B2 -26 169 34 8 1396 1236 61 0 0 chr11 106372901 106373049 -15470807 + B1_Mus1 SINE Alu 1 148 0 8 1396 350 197 84 0 chr11 106373475 106373546 -15470310 - RSINE1 SINE B4 -88 77 1 8 1396 227 345 38 92 chr11 106373643 106373774 -15470082 - MER20 DNA MER1_type -94 125 2 8 1396 238 284 30 0 chr11 106374216 106374283 -15469573 - ID4_ SINE ID -13 70 2 8 1396 237 33 0 0 chr11 106375554 106375584 -15468272 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1396 746 191 14 7 chr11 106377145 106377287 -15466569 - B1F SINE Alu -6 143 1 8 1396 724 243 118 0 chr11 106377376 106377545 -15466311 - B3 SINE B2 -27 189 1 8 1396 1181 55 0 0 chr11 106377742 106377887 -15465969 + B1_Mm SINE Alu 1 145 -2 8 1396 1766 136 87 41 chr11 106378154 106378546 -15465310 - RMER17C LTR ERVK 0 410 1 8 1396 246 235 88 0 chr11 106378599 106378667 -15465189 - ID4 SINE ID -8 75 2 8 1396 320 239 0 0 chr11 106379780 106379851 -15464005 - ID4 SINE ID -11 72 2 8 1396 819 242 67 6 chr11 106381442 106381621 -15462235 + B3 SINE B2 2 191 -25 8 1396 247 203 27 0 chr11 106381826 106381900 -15461956 + CT-rich Low_complexity Low_complexity 3 78 0 8 1396 716 221 0 8 chr11 106382073 106382201 -15461655 + RSINE1 SINE B4 8 134 -31 8 1396 225 0 0 0 chr11 106382279 106382304 -15461552 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1396 234 0 0 0 chr11 106382304 106382329 -15461527 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1396 30 27 0 0 chr11 106382337 106382374 -15461482 + AT_rich Low_complexity Low_complexity 1 37 0 8 1396 1003 119 149 0 chr11 106382374 106382542 -15461314 + B2_Mm2 SINE B2 2 194 -1 8 1396 1166 35 14 0 chr11 106382543 106382685 -15461171 + B1_Mus1 SINE Alu 2 145 -3 8 1396 213 121 0 0 chr11 106382696 106382729 -15461127 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1396 884 274 10 0 chr11 106382732 106382940 -15460916 - B3 SINE B2 -6 210 1 8 1396 189 0 0 0 chr11 106383400 106383421 -15460435 + (C)n Simple_repeat Simple_repeat 1 21 0 8 1396 336 279 53 89 chr11 106383915 106383964 -15459892 - B2_Mm2 SINE B2 -2 193 152 8 1396 182 37 37 0 chr11 106383964 106383991 -15459865 + (TGG)n Simple_repeat Simple_repeat 3 30 0 8 1396 358 251 129 13 chr11 106383991 106384110 -15459746 - B3A SINE B2 -41 157 31 8 1396 268 206 14 29 chr11 106384099 106384169 -15459687 - B3A SINE B2 -56 142 74 8 1396 613 327 28 0 chr11 106384589 106384803 -15459053 - ID_B1 SINE B4 -3 221 2 8 1396 668 250 109 51 chr11 106385475 106385749 -15458107 + B4A SINE B4 1 290 -2 8 1396 237 178 191 43 chr11 106385769 106385863 -15457993 + PB1D10 SINE Alu 2 109 -8 8 1396 1057 109 39 22 chr11 106385877 106386055 -15457801 + B2_Mm2 SINE B2 1 181 -14 8 1396 471 155 0 0 chr11 106386191 106386275 -15457581 + (TG)n Simple_repeat Simple_repeat 1 84 0 8 1396 728 251 24 217 chr11 106386417 106386869 -15456987 - MTE2a LTR MaLR -5 374 10 8 1396 853 155 42 0 chr11 106387019 106387161 -15456695 + B2_Mm2 SINE B2 36 183 -12 8 1396 327 240 188 0 chr11 106387436 106387532 -15456324 + B1F2 SINE Alu 28 141 -8 8 1396 307 194 14 94 chr11 106387636 106387787 -15456069 - B3A SINE B2 -1 215 1 8 1396 235 154 0 0 chr11 106389317 106389356 -15454500 + PB1D10 SINE Alu 79 117 0 8 1396 401 221 105 0 chr11 106390064 106390150 -15453706 + PB1D10 SINE Alu 5 99 -18 8 1396 474 321 0 22 chr11 106390223 106390360 -15453496 + RSINE1 SINE B4 4 137 -28 8 1396 271 320 67 20 chr11 106391225 106391375 -15452481 + LTR33 LTR ERVL 253 409 -106 8 1396 239 215 0 15 chr11 106391580 106391646 -15452210 + CT-rich Low_complexity Low_complexity 1 65 0 8 1396 371 226 0 0 chr11 106391664 106391726 -15452130 - B1_Mur3 SINE Alu -13 136 75 8 1396 389 252 40 0 chr11 106391821 106391920 -15451936 - PB1D9 SINE Alu -17 103 1 8 1396 260 0 0 54 chr11 106392116 106392153 -15451703 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1396 180 0 0 0 chr11 106392167 106392187 -15451669 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1396 391 231 87 11 chr11 106392187 106392279 -15451577 - PB1D10 SINE Alu -18 99 1 8 1396 549 251 201 17 chr11 106392561 106392735 -15451121 - ID_B1 SINE B4 -6 218 13 8 1396 1234 34 0 13 chr11 106394615 106394764 -15449092 + B1_Mus1 SINE Alu 2 148 0 8 1396 471 233 119 0 chr11 106396987 106397146 -15446710 + B3A SINE B2 3 180 -18 8 1396 299 288 76 9 chr11 106398443 106398548 -15445308 - PB1D7 SINE Alu -8 112 1 9 1396 1475 71 16 0 chr11 106398603 106398787 -15445069 + B2_Mm2 SINE B2 1 187 -8 9 1396 445 216 0 9 chr11 106398801 106398898 -15444958 + B1_Mur1 SINE Alu 15 136 -13 9 1396 382 280 52 70 chr11 106398923 106399038 -15444818 - B1F2 SINE Alu -3 114 2 9 1396 256 119 0 67 chr11 106399074 106399119 -15444737 - B1_Mm SINE Alu -10 137 96 9 1396 994 243 73 7 chr11 106399152 106399426 -15444430 - B4 SINE B4 0 292 1 9 1396 250 349 15 80 chr11 106399483 106399620 -15444236 - B3A SINE B2 0 198 71 9 1396 637 310 64 32 chr11 106399648 106399868 -15443988 - B4A SINE B4 -58 234 8 9 1396 371 306 0 0 chr11 106399874 106400008 -15443848 - L1M4 LINE L1 -816 5330 5197 9 1396 330 143 366 30 chr11 106400027 106400128 -15443728 - B2_Mm2 SINE B2 -14 181 47 9 1396 1219 97 11 17 chr11 106400175 106400354 -15443502 - B2_Mm1t SINE B2 -14 179 2 9 1396 983 200 34 43 chr11 106400360 106400569 -15443287 - B3 SINE B2 0 216 10 9 1396 399 227 93 0 chr11 106400631 106400728 -15443128 - RSINE1 SINE B4 -57 108 3 9 1396 218 222 0 0 chr11 106400837 106400882 -15442974 + T-rich Low_complexity Low_complexity 1 45 0 9 1396 535 221 12 94 chr11 106400882 106401042 -15442814 - B1_Mm SINE Alu 0 147 1 9 1396 333 292 61 7 chr11 106401076 106401224 -15442632 - L1M4 LINE L1 -1100 5046 4891 9 1396 312 196 0 0 chr11 106401225 106401276 -15442580 + RSINE1 SINE B4 4 54 -111 9 1396 510 258 0 30 chr11 106401273 106401405 -15442451 - ID_B1 SINE B4 -11 213 86 9 1396 808 150 0 0 chr11 106401289 106401409 -15442447 - B1_Mur2 SINE Alu -29 120 1 9 1396 425 250 97 45 chr11 106401409 106401510 -15442346 + RSINE1 SINE B4 56 163 -2 9 1396 310 375 0 18 chr11 106402842 106403005 -15440851 + L1MC LINE L1 5510 5669 -2213 9 1396 1827 136 146 0 chr11 106403713 106404029 -15439827 - ORR1B1 LTR MaLR -32 362 1 9 1396 200 167 0 0 chr11 106404455 106404485 -15439371 + (CGGT)n Simple_repeat Simple_repeat 1 30 0 9 1396 272 262 48 48 chr11 106407548 106407632 -15436224 + B1_Mur3 SINE Alu 1 84 -65 9 1396 434 234 32 11 chr11 106407578 106407673 -15436183 - B1_Mur2 SINE Alu -45 104 8 9 1396 291 245 152 54 chr11 106407598 106407710 -15436146 - MT2B LTR ERVL -361 240 118 9 1396 2233 67 3 0 chr11 106408784 106409068 -15434788 + ORR1A2 LTR MaLR 1 285 -42 9 1396 433 82 110 0 chr11 106409068 106409141 -15434715 + B2_Mm2 SINE B2 109 189 -6 9 1396 408 114 0 103 chr11 106409138 106409216 -15434640 + ORR1A2 LTR MaLR 257 326 0 9 1396 381 272 107 75 chr11 106409370 106409415 -15434441 - ID_B1 SINE B4 0 224 127 9 1396 441 224 79 30 chr11 106409415 106409516 -15434340 - B1F1 SINE Alu -10 107 2 9 1396 381 272 107 75 chr11 106409516 106409557 -15434299 - ID_B1 SINE B4 0 126 32 9 1396 880 176 0 0 chr11 106409666 106409802 -15434054 + B1_Mur4 SINE Alu 2 137 -13 9 1396 252 0 0 0 chr11 106409930 106409958 -15433898 + (GGGTG)n Simple_repeat Simple_repeat 1 28 0 9 1396 265 304 55 16 chr11 106410525 106410652 -15433204 - B1F1 SINE Alu -17 132 1 9 1396 468 279 70 21 chr11 106410737 106410880 -15432976 - RSINE1 SINE B4 -14 151 2 9 1396 1298 71 6 0 chr11 106411107 106411275 -15432581 - B2_Mm2 SINE B2 -26 169 1 9 1396 305 148 99 110 chr11 106411376 106411420 -15432436 - B3 SINE B2 -1 215 174 9 1396 670 101 0 18 chr11 106411420 106411531 -15432325 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 9 1396 305 148 99 110 chr11 106411531 106411577 -15432279 - B3 SINE B2 -43 173 126 9 1396 339 25 0 0 chr11 106411579 106411619 -15432237 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 9 1396 926 218 6 0 chr11 106411622 106411787 -15432069 - B3 SINE B2 -48 168 3 9 1396 493 261 73 37 chr11 106411796 106411987 -15431869 - B3A SINE B2 0 198 1 9 1396 395 250 18 27 chr11 106412007 106412118 -15431738 - PB1D10 SINE Alu -5 112 3 9 1396 738 231 161 0 chr11 106412643 106412829 -15431027 - B3 SINE B2 0 216 1 9 1396 419 177 51 0 chr11 106412861 106412940 -15430916 + ID4 SINE ID 1 83 0 9 1396 290 240 58 123 chr11 106413913 106414051 -15429805 + MT2B LTR ERVL 150 278 -323 9 1396 745 150 45 38 chr11 106413945 106414077 -15429779 + B1_Mur4 SINE Alu 17 149 -1 9 1396 3001 64 0 15 chr11 106414079 106414476 -15429380 + L1Md_F2 LINE L1 6192 6582 0 9 1396 212 225 0 0 chr11 106414544 106414584 -15429272 + (CCCG)n Simple_repeat Simple_repeat 1 40 0 9 1396 548 321 79 26 chr11 106414615 106414842 -15429014 - B4A SINE B4 -52 240 2 9 1396 911 134 28 21 chr11 106414851 106414996 -15428860 - B1_Mus1 SINE Alu -1 147 2 9 1396 522 0 0 0 chr11 106415002 106415060 -15428796 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1396 1541 62 16 0 chr11 106415551 106415743 -15428113 - B2_Mm2 SINE B2 0 195 1 9 1396 383 275 120 35 chr11 106415891 106416151 -15427705 - L1M5 LINE L1 -3109 3037 2761 9 1396 852 139 27 23 chr11 106416602 106416750 -15427106 - B1_Mur4 SINE Alu -1 310 19 9 1396 194 114 86 0 chr11 106419707 106419742 -15424114 - L4 LINE RTE -1139 890 853 9 1396 603 179 146 58 chr11 106420550 106420752 -15423104 - B3A SINE B2 0 216 2 9 1396 631 205 57 0 chr11 106420883 106421005 -15422851 - ID_B1 SINE B4 -2 222 94 9 1396 459 304 97 45 chr11 106422025 106422180 -15421676 - RSINE1 SINE B4 0 165 3 9 1396 356 254 15 15 chr11 106422453 106422550 -15421306 - PB1D10 SINE Alu -4 116 20 9 1396 253 261 43 0 chr11 106422606 106422675 -15421181 + Charlie12 DNA MER1_type 8 79 -2794 9 1396 240 150 0 0 chr11 106422667 106422707 -15421149 - RMER30 DNA MER1_type -151 51 12 9 1396 1629 26 0 15 chr11 106423090 106423286 -15420570 + B2_Mm1a SINE B2 1 193 0 9 1396 296 244 78 44 chr11 106423301 106423391 -15420465 - B1F SINE Alu -44 105 13 9 1396 566 208 91 8 chr11 106423682 106423803 -15420053 - B1F SINE Alu -7 142 12 9 1396 400 304 27 68 chr11 106423829 106423851 -15420005 - ID_B1 SINE B4 -2 222 82 9 1396 615 233 0 72 chr11 106423851 106423976 -15419880 - B1_Mus2 SINE Alu -31 116 1 9 1396 391 191 63 87 chr11 106423864 106423990 -15419866 - MT2B LTR ERVL -343 258 136 9 1396 458 252 131 63 chr11 106424132 106424378 -15419478 + MTEb LTR MaLR 98 378 -1 9 1396 305 295 10 59 chr11 106424414 106424515 -15419341 - L2c LINE L2 -3 3384 3289 9 1396 600 222 96 0 chr11 106424767 106424902 -15418954 - B3 SINE B2 -68 148 1 9 1396 487 313 0 0 chr11 106425103 106425218 -15418638 - PB1D10 SINE Alu -1 116 2 9 1396 276 274 192 46 chr11 106425218 106425232 -15418624 - B4 SINE B4 -67 224 77 9 1396 525 256 131 18 chr11 106426565 106426743 -15417113 - B3A SINE B2 -10 185 1 9 1396 425 237 186 0 chr11 106426757 106426875 -15416981 - B1_Mur2 SINE Alu 0 149 10 9 1396 1168 75 0 0 chr11 106426918 106427064 -15416792 - B1_Mus2 SINE Alu 0 147 2 9 1396 1340 80 0 33 chr11 106427157 106427316 -15416540 + B2_Mm1a SINE B2 2 160 -33 9 1396 197 0 43 85 chr11 106427316 106427363 -15416493 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 9 1396 1340 80 0 33 chr11 106427363 106427385 -15416471 + B2_Mm1a SINE B2 161 177 -16 9 1396 885 153 22 0 chr11 106427625 106427762 -15416094 + B1_Mur2 SINE Alu 3 142 -7 9 1396 1324 44 0 0 chr11 106427986 106428146 -15415710 + B2_Mm2 SINE B2 2 161 -34 9 1396 204 40 0 0 chr11 106428146 106428171 -15415685 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 9 1396 859 195 60 55 chr11 106428171 106428211 -15415645 + B3 SINE B2 165 203 -13 9 1396 231 36 0 0 chr11 106429763 106429791 -15414065 + (TCC)n Simple_repeat Simple_repeat 1 28 0 9 1397 334 272 30 71 chr11 106430764 106430863 -15412993 - PB1D10 SINE Alu -22 95 1 9 1397 582 200 8 34 chr11 106431828 106431947 -15411909 - B1_Mur1 SINE Alu -3 146 31 9 1397 576 248 105 23 chr11 106432123 106432312 -15411544 - B3A SINE B2 -13 203 1 9 1397 348 24 0 0 chr11 106434143 106434184 -15409672 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1397 363 289 0 0 chr11 106434641 106434717 -15409139 + RSINE1 SINE B4 75 150 -15 9 1397 927 177 14 0 chr11 106435096 106435243 -15408613 + B1_Mur3 SINE Alu 1 149 0 9 1397 426 88 0 0 chr11 106435799 106435867 -15407989 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 9 1397 251 247 194 0 chr11 106436083 106436176 -15407680 - PB1D9 SINE Alu -5 115 5 9 1397 739 226 89 47 chr11 106436961 106437151 -15406705 + B3A SINE B2 1 198 0 9 1397 432 0 0 0 chr11 106437399 106437447 -15406409 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1397 656 281 115 32 chr11 106437490 106437707 -15406149 - B4A SINE B4 -56 236 2 9 1397 246 189 148 19 chr11 106437775 106437829 -15406027 - ID4_ SINE ID -1 82 22 9 1397 507 271 41 0 chr11 106437954 106438076 -15405780 - ID_B1 SINE B4 -7 217 91 9 1397 550 258 112 10 chr11 106438481 106438677 -15405179 + B3 SINE B2 1 216 0 9 1397 1217 48 7 0 chr11 106438684 106438829 -15405027 + B1_Mus1 SINE Alu 1 146 -2 9 1397 32 0 0 0 chr11 106438834 106438866 -15404990 + AT_rich Low_complexity Low_complexity 1 32 0 9 1397 297 68 0 0 chr11 106439171 106439215 -15404641 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1397 1281 28 0 0 chr11 106439222 106439367 -15404489 - B1_Mm SINE Alu -1 146 2 9 1397 235 135 0 0 chr11 106439376 106439413 -15404443 - ID_B1 SINE B4 -110 114 78 9 1397 189 0 0 0 chr11 106439413 106439434 -15404422 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 9 1397 429 20 0 0 chr11 106439819 106439869 -15403987 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1397 310 265 0 0 chr11 106441210 106441278 -15402578 + RSINE1 SINE B4 11 78 -87 1 1397 396 103 0 0 chr11 106441287 106441345 -15402511 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1 1397 567 159 0 0 chr11 106442554 106442642 -15401214 - B3 SINE B2 -125 91 4 1 1397 780 245 13 169 chr11 106442739 106442956 -15400900 + B3A SINE B2 1 187 -11 1 1397 944 155 0 0 chr11 106442956 106443104 -15400752 + B1_Mur2 SINE Alu 2 149 0 1 1397 463 245 13 169 chr11 106443104 106443117 -15400739 + B2_Mm2 SINE B2 184 195 0 1 1397 238 250 0 30 chr11 106443242 106443308 -15400548 - Helitron3Na_Mam RC Helitron -8 478 415 1 1397 955 142 0 20 chr11 106443536 106443687 -15400169 + B1_Mur1 SINE Alu 2 149 0 1 1397 761 253 6 13 chr11 106443803 106444008 -15399848 - B3A SINE B2 -4 212 5 1 1397 451 255 71 0 chr11 106444044 106444142 -15399714 - B1F SINE Alu -17 132 28 1 1397 426 239 11 12 chr11 106444151 106444254 -15399602 - B1_Mur4 SINE Alu -40 110 2 1 1397 185 65 0 31 chr11 106444260 106444292 -15399564 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1397 715 94 28 0 chr11 106444321 106444427 -15399429 - B1_Mur4 SINE Alu -1 149 41 1 1397 304 250 152 9 chr11 106444963 106445068 -15398788 + ID_B1 SINE B4 3 122 -102 1 1397 245 276 61 73 chr11 106445068 106445087 -15398769 + B4A SINE B4 66 83 -209 1 1397 335 255 111 56 chr11 106445087 106445195 -15398661 + PB1D10 SINE Alu 4 117 0 1 1397 597 100 0 0 chr11 106445479 106445569 -15398287 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1397 1326 97 0 0 chr11 106445584 106445966 -15397890 + (CA)n Simple_repeat Simple_repeat 1 382 0 1 1397 1039 52 89 0 chr11 106446505 106446640 -15397216 + B1_Mus2 SINE Alu 1 147 0 1 1397 216 0 0 0 chr11 106447319 106447343 -15396513 + (CTTG)n Simple_repeat Simple_repeat 3 26 0 1 1397 672 234 7 49 chr11 106447344 106447488 -15396368 - B1_Mur1 SINE Alu -9 140 3 1 1397 800 272 5 25 chr11 106447663 106447811 -15396045 + B3A SINE B2 5 150 -48 1 1397 200 35 35 0 chr11 106447811 106447840 -15396016 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1397 800 272 5 25 chr11 106447840 106447887 -15395969 + B3A SINE B2 151 196 -2 1 1397 558 231 58 75 chr11 106447950 106448123 -15395733 + B3A SINE B2 47 216 0 1 1397 415 317 20 20 chr11 106448239 106448387 -15395469 + B1F1 SINE Alu 1 148 -1 1 1397 453 200 0 0 chr11 106448614 106448694 -15395162 + B3A SINE B2 1 80 -118 1 1397 241 319 31 52 chr11 106448694 106448709 -15395147 + RSINE1 SINE B4 3 95 -70 1 1397 660 232 14 7 chr11 106448934 106449077 -15394779 + B3 SINE B2 73 216 0 1 1397 191 242 0 16 chr11 106449106 106449169 -15394687 + GA-rich Low_complexity Low_complexity 1 62 0 1 1397 350 222 42 0 chr11 106449434 106449506 -15394350 - PB1D10 SINE Alu -3 114 40 1 1397 225 326 188 13 chr11 106451348 106451386 -15392470 - B4 SINE B4 -30 262 88 1 1397 493 231 9 27 chr11 106451386 106451497 -15392359 - PB1D7 SINE Alu -9 111 3 1 1397 619 290 48 0 chr11 106451564 106451750 -15392106 - B3A SINE B2 -3 195 1 1 1397 225 246 15 15 chr11 106452139 106452205 -15391651 + G-rich Low_complexity Low_complexity 4 69 0 1 1397 272 245 143 41 chr11 106452342 106452360 -15391496 - ID_B1 SINE B4 -1 223 116 1 1397 351 253 25 12 chr11 106452360 106452440 -15391416 - B1F1 SINE Alu -34 115 35 1 1397 499 48 0 0 chr11 106452928 106452990 -15390866 - B2_Mm1t SINE B2 -130 63 2 1 1397 500 231 23 69 chr11 106453157 106453287 -15390569 + B1F SINE Alu 19 142 -7 1 1397 1082 208 14 50 chr11 106453295 106453513 -15390343 + B3 SINE B2 7 216 0 1 1397 1464 74 5 0 chr11 106453539 106453729 -15390127 + B2_Mm1a SINE B2 2 192 -1 1 1397 1092 160 56 14 chr11 106454619 106454834 -15389022 - URR1A DNA MER1_type -2 224 1 1 1397 437 198 81 0 chr11 106454957 106455043 -15388813 + PB1D7 SINE Alu 28 120 0 1 1397 404 37 19 0 chr11 106455712 106455766 -15388090 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1397 331 325 0 0 chr11 106455895 106455978 -15387878 + 7SLRNA srpRNA srpRNA 4 86 -228 1 1397 927 259 15 0 chr11 106456015 106456212 -15387644 + B3 SINE B2 2 201 -15 1 1397 181 0 147 0 chr11 106457051 106457085 -15386771 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 1 1397 24 0 0 0 chr11 106457421 106457445 -15386411 + GC_rich Low_complexity Low_complexity 1 24 0 1 1397 1013 41 0 218 chr11 106457713 106457797 -15386059 + B1_Mus1 SINE Alu 2 65 -83 1 1397 1293 98 38 11 chr11 106457797 106457983 -15385873 - B2_Mm1a SINE B2 -1 192 2 1 1397 1013 41 0 218 chr11 106457983 106458086 -15385770 + B1_Mus1 SINE Alu 66 148 0 1 1397 305 209 25 132 chr11 106458088 106458209 -15385647 + MT2B LTR ERVL 157 264 -337 1 1397 672 135 19 9 chr11 106458112 106458217 -15385639 + B1_Mur2 SINE Alu 17 122 -27 1 1397 381 135 135 0 chr11 106458299 106458373 -15385483 - B1_Mur1 SINE Alu -1 148 65 1 1397 1542 32 43 0 chr11 106458449 106458634 -15385222 - B2_Mm1a SINE B2 0 193 1 1 1397 228 35 0 0 chr11 106458690 106458719 -15385137 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 1 1397 258 255 15 15 chr11 106459011 106459113 -15384743 + PB1D10 SINE Alu 27 129 -19 1 1397 490 234 184 8 chr11 106459376 106459501 -15384355 - B1F SINE Alu 0 149 3 1 1397 1206 50 0 0 chr11 106460030 106460171 -15383685 + B1_Mus1 SINE Alu 2 142 -6 1 1397 1301 86 32 0 chr11 106460202 106460388 -15383468 + B2_Mm1t SINE B2 2 193 0 1 1397 229 276 86 0 chr11 106461132 106461190 -15382666 + tRNA-Ala-GCG tRNA tRNA 13 75 0 1 1397 821 294 61 87 chr11 106462232 106462678 -15381178 - MTC LTR MaLR 0 419 6 1 1397 908 131 29 7 chr11 106464042 106464180 -15379676 - B1_Mur3 SINE Alu -7 142 2 1 1397 23 54 0 0 chr11 106464183 106464220 -15379636 + AT_rich Low_complexity Low_complexity 1 37 0 1 1397 441 216 138 43 chr11 106464247 106464363 -15379493 - RSINE1 SINE B4 -35 130 4 1 1397 270 350 0 0 chr11 106465191 106465271 -15378585 - ID4 SINE ID 0 83 4 1 1397 1456 58 0 0 chr11 106465513 106465687 -15378169 + B2_Mm1t SINE B2 2 175 -18 1 1397 934 226 54 5 chr11 106465819 106466024 -15377832 - B3 SINE B2 0 216 2 1 1397 420 285 22 37 chr11 106466222 106466357 -15377499 + ID_B1 SINE B4 92 224 0 1 1397 1421 86 37 0 chr11 106466508 106466695 -15377161 - B2_Mm2 SINE B2 -1 194 1 1 1397 808 182 0 20 chr11 106466838 106466989 -15376867 + B1_Mus1 SINE Alu 1 148 0 1 1397 180 77 0 0 chr11 106467113 106467139 -15376717 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1397 336 311 90 8 chr11 106467173 106467306 -15376550 + RSINE1 SINE B4 8 151 -14 1 1397 252 247 84 24 chr11 106468798 106468881 -15374975 + MIRb SINE MIR 64 151 -117 1 1397 744 151 87 0 chr11 106468888 106469014 -15374842 + B1_Mur3 SINE Alu 2 138 -11 1 1397 231 111 0 0 chr11 106469019 106469055 -15374801 + B3 SINE B2 8 43 -173 1 1397 1243 34 0 7 chr11 106469055 106469203 -15374653 + B1_Mm SINE Alu 1 147 0 1 1397 798 147 63 6 chr11 106469210 106469368 -15374488 + B2_Mm2 SINE B2 27 193 -2 1 1397 673 145 18 9 chr11 106469549 106469660 -15374196 - B1_Mur2 SINE Alu -5 144 33 1 1397 1053 143 114 0 chr11 106469707 106469882 -15373974 + B2_Mm2 SINE B2 1 195 0 1 1397 357 82 0 0 chr11 106469887 106469936 -15373920 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 1 1397 22 0 0 0 chr11 106470037 106470059 -15373797 + AT_rich Low_complexity Low_complexity 1 22 0 1 1397 189 0 0 0 chr11 106470059 106470080 -15373776 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1 1397 580 180 329 18 chr11 106470194 106470358 -15373498 + B3 SINE B2 2 216 0 1 1397 273 266 42 21 chr11 106471173 106471269 -15372587 - MIR SINE MIR -126 136 39 1 1397 200 294 39 0 chr11 106471462 106471513 -15372343 + MIRc SINE MIR 1 53 -215 1 1397 664 145 3 9 chr11 106471537 106471656 -15372200 + B1_Mus1 SINE Alu 8 120 0 1 1397 336 138 0 0 chr11 106471656 106471721 -15372135 + (GAAAA)n Simple_repeat Simple_repeat 3 67 0 1 1397 789 255 44 0 chr11 106472335 106472539 -15371317 + ID_B1 SINE B4 3 215 -9 1 1397 409 34 34 0 chr11 106472539 106472598 -15371258 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1 1397 46 45 0 0 chr11 106474281 106474348 -15369508 + GC_rich Low_complexity Low_complexity 1 67 0 1 1397 635 252 22 0 chr11 106474858 106474993 -15368863 - ID_B1 SINE B4 -3 221 84 1 1397 1283 34 0 0 chr11 106475389 106475536 -15368320 - B1_Mus2 SINE Alu 0 147 1 1 1397 642 325 127 43 chr11 106476142 106476409 -15367447 - MT2A LTR ERVL -158 375 82 1 1397 1379 73 23 0 chr11 106476409 106476586 -15367270 + B2_Mm2 SINE B2 1 181 -14 1 1397 432 0 0 0 chr11 106476586 106476634 -15367222 + (GAA)n Simple_repeat Simple_repeat 2 49 0 1 1397 642 325 127 43 chr11 106476634 106476687 -15367169 - MT2A LTR ERVL -452 81 28 1 1397 344 259 12 0 chr11 106476718 106476799 -15367057 + PB1D7 SINE Alu 21 102 -18 1 1397 450 0 0 0 chr11 106477530 106477580 -15366276 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 1397 1315 68 0 0 chr11 106477580 106477742 -15366114 - B2_Mm2 SINE B2 -33 162 1 1 1397 207 0 0 0 chr11 106477751 106477774 -15366082 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1397 1233 48 7 0 chr11 106477787 106477932 -15365924 - B1_Mus1 SINE Alu -1 147 2 1 1397 502 295 9 0 chr11 106477970 106478082 -15365774 + RSINE1 SINE B4 10 122 -43 1 1397 396 0 0 0 chr11 106478095 106478139 -15365717 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1397 1115 86 0 0 chr11 106478172 106478311 -15365545 + B1_Mus1 SINE Alu 1 139 -9 1 1397 193 29 29 29 chr11 106478311 106478346 -15365510 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1397 202 310 42 23 chr11 106478365 106478475 -15365381 - MIRc SINE MIR -124 144 22 1 1397 396 255 64 0 chr11 106478700 106478794 -15365062 - B1F SINE Alu -8 141 42 1 1397 685 243 147 0 chr11 106478716 106478893 -15364963 - ID_B1 SINE B4 -21 203 1 1 1397 634 243 26 33 chr11 106479032 106479185 -15364671 - RSINE1 SINE B4 -13 152 1 1 1397 307 402 69 26 chr11 106479200 106479389 -15364467 + Tigger5 DNA MER2_type 38 234 -2172 1 1397 667 60 0 0 chr11 106479464 106479548 -15364308 + B1_Mm SINE Alu 64 147 0 1 1397 191 152 0 21 chr11 106479548 106479595 -15364261 + GA-rich Low_complexity Low_complexity 3 48 0 1 1397 774 281 25 0 chr11 106479606 106479805 -15364051 + ID_B1 SINE B4 2 205 -19 1 1397 1201 68 0 0 chr11 106479832 106479978 -15363878 + B1_Mus1 SINE Alu 3 148 0 1 1397 243 125 0 0 chr11 106479978 106480018 -15363838 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1397 1598 32 16 5 chr11 106480307 106480497 -15363359 + B2_Mm1a SINE B2 2 193 0 1 1397 418 289 173 0 chr11 106480517 106480621 -15363235 + ID_B1 SINE B4 82 203 -21 1 1397 775 189 20 27 chr11 106480760 106480907 -15362949 + B1_Mur4 SINE Alu 4 149 -1 1 1397 712 270 172 27 chr11 106481132 106481463 -15362393 - MTEa LTR MaLR 0 379 1 1 1397 1010 88 7 0 chr11 106482032 106482179 -15361677 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 1 1397 579 261 0 56 chr11 106482180 106482322 -15361534 - ID_B1 SINE B4 -12 212 79 1 1397 414 0 0 0 chr11 106483115 106483161 -15360695 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1397 315 0 0 0 chr11 106483161 106483195 -15360661 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1397 651 281 179 45 chr11 106484097 106484432 -15359424 + MLT1F LTR MaLR 1 380 -168 1 1397 519 17 0 0 chr11 106484448 106484508 -15359348 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1397 821 157 56 21 chr11 106484534 106484677 -15359179 - B1_Mur1 SINE Alu -1 148 1 1 1397 536 278 57 67 chr11 106484679 106484872 -15358984 - B4A SINE B4 -63 229 39 1 1397 265 365 18 18 chr11 106484861 106484970 -15358886 - B4A SINE B4 -182 110 2 1 1397 256 327 119 39 chr11 106485005 106485242 -15358614 + MLT1H LTR MaLR 111 370 -209 1 1397 3773 60 19 2 chr11 106485307 106485774 -15358082 - MT2C_Mm LTR ERVL 0 475 1 1 1397 2582 113 78 13 chr11 106486100 106486495 -15357361 - MTC LTR MaLR 0 421 1 1 1397 702 81 0 0 chr11 106487187 106487298 -15356558 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 1397 803 68 0 0 chr11 106487807 106487910 -15355946 + B2_Mm2 SINE B2 2 104 -91 1 1397 203 88 0 29 chr11 106487933 106487968 -15355888 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 1 1397 260 246 66 0 chr11 106487983 106488042 -15355814 + MT2B LTR ERVL 177 239 -362 1 1397 777 74 37 0 chr11 106488042 106488150 -15355706 + BC1_Mm scRNA scRNA 1 112 -40 1 1397 501 120 0 51 chr11 106488148 106488227 -15355629 + B1_Mur4 SINE Alu 75 149 -1 1 1397 1311 19 12 0 chr11 106488866 106489026 -15354830 - B2_Mm1a SINE B2 -5 188 27 1 1397 288 243 33 156 chr11 106489252 106489374 -15354482 - B1F SINE Alu -24 125 19 1 1397 755 151 49 28 chr11 106489396 106489539 -15354317 - B1_Mur2 SINE Alu -2 147 2 1 1397 3304 44 26 0 chr11 106489586 106489972 -15353884 - MTA_Mm LTR MaLR 0 396 1 1 1397 324 0 0 0 chr11 106490149 106490185 -15353671 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1397 458 125 0 27 chr11 106490737 106490811 -15353045 + ORR1A4 LTR MaLR 1 72 -257 1 1397 245 146 0 20 chr11 106490811 106490860 -15352996 + G-rich Low_complexity Low_complexity 6 53 0 1 1397 303 239 275 0 chr11 106490978 106491087 -15352769 + B1F SINE Alu 1 139 -10 1 1397 582 279 0 0 chr11 106491085 106491207 -15352649 + ID_B1 SINE B4 82 203 -21 1 1397 844 128 0 48 chr11 106491220 106491324 -15352532 + polypurine Low_complexity Low_complexity 2 103 0 1 1397 2401 100 0 21 chr11 106491324 106491660 -15352196 - ORR1A4 LTR MaLR 0 329 1 1 1397 844 128 0 48 chr11 106491660 106491743 -15352113 + polypurine Low_complexity Low_complexity 104 180 0 1 1397 577 259 219 34 chr11 106491747 106491794 -15352062 + MT2A LTR ERVL 188 231 -302 1 1397 195 42 0 0 chr11 106491794 106491818 -15352038 + (CTG)n Simple_repeat Simple_repeat 3 26 0 1 1397 577 259 219 34 chr11 106491818 106492062 -15351794 + MT2A LTR ERVL 232 533 0 1 1397 254 242 0 0 chr11 106492096 106492162 -15351694 + L1M5 LINE L1 5825 5890 -274 1 1397 2637 74 62 0 chr11 106492193 106492531 -15351325 + RLTR10D LTR ERVK 1 359 0 1 1397 812 93 169 62 chr11 106492531 106492691 -15351165 + IAP-d-int LTR ERVK 1 177 -6365 1 1397 800 186 6 0 chr11 106492685 106492841 -15351015 + IAP-d-int LTR ERVK 347 503 -6039 1 1397 2111 155 5 36 chr11 106492841 106493229 -15350627 + IAP-d-int LTR ERVK 5007 5382 -1160 1 1397 6043 91 3 35 chr11 106493216 106494114 -15349742 + IAP-d-int LTR ERVK 5673 6542 0 1 1397 2685 74 62 0 chr11 106494114 106494452 -15349404 + RLTR10D LTR ERVK 1 359 0 1 1397 298 304 259 38 chr11 106494892 106495104 -15348752 + RLTR9A LTR ERVK 1 259 -109 1 1397 922 35 2 10 chr11 106495108 106495231 -15348625 + B1_Mm SINE Alu 23 142 -5 1 1397 485 32 16 0 chr11 106495236 106495299 -15348557 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 1 1397 31 0 0 0 chr11 106495302 106495333 -15348523 + AT_rich Low_complexity Low_complexity 1 31 0 1 1397 254 237 0 17 chr11 106495333 106495393 -15348463 + RLTR9A LTR ERVK 275 333 -76 1 1397 1675 31 0 0 chr11 106495450 106495643 -15348213 - B2_Mm1a SINE B2 0 193 1 1 1397 419 218 11 33 chr11 106495799 106495889 -15347967 + B4A SINE B4 1 88 -204 1 1397 698 273 10 39 chr11 106495890 106496096 -15347760 + B3 SINE B2 17 216 0 1 1397 764 152 0 46 chr11 106496100 106496231 -15347625 + B1_Mur4 SINE Alu 2 126 -24 1 1397 231 43 478 0 chr11 106496239 106496285 -15347571 + BC1_Mm scRNA scRNA 7 74 -78 1 1397 627 14 0 0 chr11 106496285 106496357 -15347499 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1397 426 193 84 0 chr11 106496380 106496463 -15347393 + B4A SINE B4 134 223 -69 1 1397 813 198 23 111 chr11 106496473 106496689 -15347167 + B3A SINE B2 2 198 0 1 1397 592 183 18 16 chr11 106496708 106496830 -15347026 + B1_Mur3 SINE Alu 34 149 0 1 1397 25 0 0 0 chr11 106496890 106496915 -15346941 + AT_rich Low_complexity Low_complexity 1 25 0 1 1397 645 259 7 7 chr11 106497365 106497509 -15346347 - ID_B1 SINE B4 -3 221 78 1 1397 496 252 9 0 chr11 106497504 106497615 -15346241 - ID_B1 SINE B4 -1 223 112 1 1397 824 199 0 40 chr11 106497819 106497971 -15345885 - B1_Mus1 SINE Alu 0 148 3 1 1397 501 264 51 58 chr11 106498063 106498200 -15345656 + B3A SINE B2 1 136 -62 1 1397 266 178 362 38 chr11 106498195 106498300 -15345556 + RLTR12A LTR ERVK 181 319 -249 1 1397 1302 106 6 0 chr11 106498302 106498481 -15345375 + B2_Mm2 SINE B2 2 181 -14 1 1397 256 254 61 130 chr11 106498495 106498626 -15345230 + MT2B LTR ERVL 157 278 -323 1 1397 667 157 71 40 chr11 106498522 106498648 -15345208 + B1_Mus2 SINE Alu 13 142 -5 1 1397 21 0 0 0 chr11 106498651 106498672 -15345184 + AT_rich Low_complexity Low_complexity 1 21 0 1 1397 920 142 7 20 chr11 106499387 106499538 -15344318 - B1_Mur2 SINE Alu 0 149 1 1 1397 441 0 0 0 chr11 106499569 106499618 -15344238 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1397 225 128 0 0 chr11 106499640 106499687 -15344169 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 1397 503 279 113 19 chr11 106499786 106499998 -15343858 - RMER17C LTR ERVK -32 378 147 1 1397 335 141 16 0 chr11 106500001 106500065 -15343791 + GA-rich Low_complexity Low_complexity 1 65 0 1 1397 340 207 121 43 chr11 106500142 106500270 -15343586 - PB1D9 SINE Alu -10 139 12 2 1397 485 167 395 13 chr11 106500271 106500423 -15343433 - ID_B1 SINE B4 -12 212 3 3 1397 226 267 33 0 chr11 106501066 106501126 -15342730 + ID2 SINE ID 1 62 -21 4 1397 875 138 0 22 chr11 106501190 106501342 -15342514 - B1_Mus2 SINE Alu 0 148 1 5 1397 341 117 17 0 chr11 106501489 106501549 -15342307 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 6 1397 261 289 0 58 chr11 106501563 106501666 -15342190 + G-rich Low_complexity Low_complexity 6 102 0 7 1397 381 96 0 0 chr11 106501949 106502001 -15341855 - MTD LTR MaLR -1 418 367 8 1397 838 201 111 9 chr11 106501976 106502164 -15341692 - MTD LTR MaLR -226 195 7 8 1397 684 146 82 68 chr11 106502196 106502343 -15341513 + B1_Mur1 SINE Alu 1 149 0 9 1397 1382 65 0 0 chr11 106502386 106502556 -15341300 + B2_Mm1a SINE B2 5 174 -19 1 1397 226 94 19 19 chr11 106502615 106502628 -15341228 + (CAAAAA)n Simple_repeat Simple_repeat 2 15 0 1 1397 1092 61 0 104 chr11 106502628 106502792 -15341064 + B1_Mm SINE Alu 1 147 0 1 1397 226 94 19 19 chr11 106502792 106502832 -15341024 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1397 651 234 141 27 chr11 106502835 106502984 -15340872 - ID_B1 SINE B4 -25 199 34 1 1397 2086 133 72 16 chr11 106503861 106504249 -15339607 - RMER17C LTR ERVK 0 410 1 1 1397 1480 274 45 33 chr11 106504492 106504918 -15338938 - RLTR19C LTR ERVK 0 506 76 1 1397 495 225 198 71 chr11 106504987 106505169 -15338687 - RMER12 LTR ERVK -104 1218 1014 1 1397 1452 244 71 98 chr11 106505268 106505696 -15338160 + RMER19C LTR ERVK 139 577 -34 1 1397 1301 115 16 0 chr11 106505696 106505887 -15337969 + B2_Mm2 SINE B2 2 195 0 1 1397 1123 87 110 0 chr11 106505889 106506062 -15337794 + B2_Mm1t SINE B2 1 192 -1 2 1397 1452 244 71 98 chr11 106506062 106506111 -15337745 + RMER19C LTR ERVK 578 606 -5 1 1397 1116 82 0 13 chr11 106506112 106506261 -15337595 + B1_Mm SINE Alu 1 147 0 2 1397 987 89 228 0 chr11 106506273 106506431 -15337425 + B2_Mm2 SINE B2 1 194 -1 2 1397 1170 206 8 34 chr11 106506445 106506711 -15337145 - RMER12 LTR ERVK -469 853 595 1 1397 291 106 0 41 chr11 106506740 106506789 -15337067 - B2_Mm2 SINE B2 -101 94 48 2 1397 4123 94 34 45 chr11 106506822 106507081 -15336775 - RMER12 LTR ERVK -705 617 386 1 1397 1085 116 0 0 chr11 106507081 106507228 -15336628 - B1_Mus1 SINE Alu 0 148 2 2 1397 4123 94 34 45 chr11 106507228 106507592 -15336264 - RMER12 LTR ERVK -937 385 1 1 1397 553 53 66 0 chr11 106507592 106507668 -15336188 - RLTR19C LTR ERVK -425 81 1 2 1397 1260 47 0 0 chr11 106507764 106507912 -15335944 + B1_Mus1 SINE Alu 1 148 0 2 1397 1170 148 25 30 chr11 106507961 106508163 -15335693 + RMER6A LTR ERVK 517 717 -39 2 1397 571 274 73 34 chr11 106508191 106508395 -15335461 + RLTR9A LTR ERVK 157 368 0 2 1397 434 311 53 53 chr11 106508493 106508505 -15335351 - B4 SINE B4 -58 234 191 2 1397 702 188 125 0 chr11 106508505 106508633 -15335223 - B1_Mus2 SINE Alu -3 144 1 3 1397 434 311 53 53 chr11 106508633 106508663 -15335193 - B4 SINE B4 -58 190 65 2 1397 371 226 71 0 chr11 106508671 106508755 -15335101 - B1F1 SINE Alu -50 99 10 3 1397 1140 124 0 0 chr11 106508762 106508940 -15334916 + (TCC)n Simple_repeat Simple_repeat 2 179 0 3 1397 689 155 8 0 chr11 106508941 106509070 -15334786 + CT-rich Low_complexity Low_complexity 3 132 0 3 1397 216 288 0 120 chr11 106509109 106509184 -15334672 - RSINE1 SINE B4 -61 104 39 3 1397 273 57 0 0 chr11 106509289 106509324 -15334532 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 3 1397 464 344 54 5 chr11 106509480 106509664 -15334192 - MTEa LTR MaLR -1 378 186 3 1397 336 271 31 0 chr11 106510294 106510390 -15333466 - B1F1 SINE Alu -50 99 1 3 1397 1166 75 0 13 chr11 106510661 106510810 -15333046 + B1_Mus1 SINE Alu 2 148 0 3 1397 311 60 20 0 chr11 106510859 106510909 -15332947 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 3 1397 770 90 0 0 chr11 106510933 106511033 -15332823 - B2_Mm2 SINE B2 -94 101 2 4 1397 221 292 0 0 chr11 106511087 106511135 -15332721 - B1F2 SINE Alu -101 48 1 4 1397 195 42 0 0 chr11 106511260 106511284 -15332572 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1397 748 271 5 45 chr11 106511538 106511739 -15332117 + B3A SINE B2 2 194 -4 4 1397 527 286 63 21 chr11 106511768 106511911 -15331945 + RSINE1 SINE B4 4 152 -13 4 1397 191 36 0 35 chr11 106511932 106511961 -15331895 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1397 22 35 0 0 chr11 106511962 106511991 -15331865 + AT_rich Low_complexity Low_complexity 1 29 0 4 1397 496 192 87 58 chr11 106512086 106512223 -15331633 - ID_B1 SINE B4 0 224 84 4 1397 250 190 16 79 chr11 106512223 106512286 -15331570 - MTE2a LTR MaLR 0 379 321 4 1397 810 162 104 35 chr11 106512262 106512435 -15331421 + B3 SINE B2 8 192 -24 4 1397 495 0 0 0 chr11 106512435 106512490 -15331366 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1397 22 0 0 30 chr11 106512490 106512501 -15331355 + AT_rich Low_complexity Low_complexity 1 11 0 5 1397 1014 54 123 0 chr11 106512501 106512631 -15331225 - B1_Mm SINE Alu 0 147 2 5 1397 22 0 0 30 chr11 106512631 106512652 -15331204 + AT_rich Low_complexity Low_complexity 1 21 0 5 1397 237 277 45 30 chr11 106512652 106512719 -15331137 - MTE2a LTR MaLR -30 349 282 4 1397 960 94 0 0 chr11 106512732 106512859 -15330997 + BGLII_B LTR ERVK 315 441 0 5 1397 469 267 26 97 chr11 106512859 106513047 -15330809 - MTE2a LTR MaLR -139 240 67 4 1397 239 136 0 83 chr11 106513239 106513287 -15330569 - ID SINE ID -178 46 3 4 1397 3174 63 8 12 chr11 106513769 106514171 -15329685 - MTB LTR MaLR 0 400 1 5 1397 1316 64 41 51 chr11 106514182 106514379 -15329477 - B2_Mm2 SINE B2 0 195 1 5 1397 1243 54 0 0 chr11 106514515 106514662 -15329194 + B1_Mus2 SINE Alu 1 147 0 5 1397 352 157 0 239 chr11 106514675 106514784 -15329072 + B1F SINE Alu 67 149 0 5 1397 1441 88 5 0 chr11 106514813 106515005 -15328851 + B2_Mm1a SINE B2 1 193 0 5 1397 1163 75 0 7 chr11 106515031 106515169 -15328687 + B1_Mm SINE Alu 1 138 -9 6 1397 350 21 21 0 chr11 106515169 106515216 -15328640 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 6 1397 261 306 86 26 chr11 106515289 106515440 -15328416 + B4A SINE B4 1 160 -132 6 1397 425 302 33 16 chr11 106516604 106516725 -15327131 + ID_B1 SINE B4 45 167 -57 6 1397 401 257 0 71 chr11 106516649 106516762 -15327094 + PB1D10 SINE Alu 13 117 0 6 1397 378 305 95 0 chr11 106517052 106517157 -15326699 - PB1D7 SINE Alu 0 120 6 6 1397 316 280 80 56 chr11 106517193 106517207 -15326649 + B4 SINE B4 77 93 -199 6 1397 519 191 38 29 chr11 106517207 106517330 -15326526 + B1_Mur2 SINE Alu 2 125 -24 6 1397 356 244 106 31 chr11 106517295 106517456 -15326400 + B4A SINE B4 106 278 -14 6 1397 1588 37 5 0 chr11 106517496 106517683 -15326173 + B2_Mm1a SINE B2 2 189 -4 6 1397 492 295 30 15 chr11 106517691 106517822 -15326034 + RSINE1 SINE B4 3 135 -30 7 1397 23 33 0 0 chr11 106518033 106518063 -15325793 + AT_rich Low_complexity Low_complexity 1 30 0 7 1397 1504 74 5 0 chr11 106518123 106518313 -15325543 + B2_Mm1a SINE B2 2 192 -1 7 1397 225 0 0 0 chr11 106518520 106518545 -15325311 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1397 480 35 0 0 chr11 106518639 106518697 -15325159 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1397 1094 78 7 0 chr11 106518698 106518839 -15325017 - B1_Mus1 SINE Alu -6 142 1 7 1397 370 313 127 0 chr11 106518867 106519017 -15324839 - B4A SINE B4 -122 170 2 7 1397 287 274 91 66 chr11 106520049 106520170 -15323686 + RSINE1 SINE B4 2 125 -40 7 1397 408 20 0 0 chr11 106520171 106520220 -15323636 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1397 468 0 0 0 chr11 106520358 106520410 -15323446 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1397 264 224 0 0 chr11 106520579 106520646 -15323210 + (CACCAT)n Simple_repeat Simple_repeat 6 72 0 8 1397 571 127 5 128 chr11 106521633 106521772 -15322084 - B1_Mur4 SINE Alu 0 150 1 8 1397 213 39 0 0 chr11 106522284 106522310 -15321546 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 8 1397 279 157 0 0 chr11 106522331 106522382 -15321474 + (CGTG)n Simple_repeat Simple_repeat 4 54 0 8 1397 766 294 104 30 chr11 106522409 106522480 -15321376 - B4 SINE B4 0 292 222 8 1397 663 13 0 0 chr11 106522480 106522556 -15321300 + (TTTCC)n Simple_repeat Simple_repeat 5 80 0 8 1397 766 294 104 30 chr11 106522556 106522754 -15321102 - B4 SINE B4 -71 221 3 8 1397 285 312 0 0 chr11 106522754 106522818 -15321038 + C-rich Low_complexity Low_complexity 4 67 0 8 1397 866 228 124 5 chr11 106523625 106523819 -15320037 - ID_B1 SINE B4 -2 222 6 8 1397 603 233 0 43 chr11 106523826 106523965 -15319891 - B1_Mur2 SINE Alu 0 149 17 8 1397 471 100 0 0 chr11 106524211 106524281 -15319575 + (T)n Simple_repeat Simple_repeat 1 70 0 8 1397 1234 54 0 0 chr11 106524281 106524428 -15319428 - B1_Mus2 SINE Alu 0 147 1 9 1397 1193 219 0 0 chr11 106524533 106524738 -15319118 + B3 SINE B2 1 205 -11 9 1397 252 200 0 0 chr11 106524871 106524926 -15318930 + GA-rich Low_complexity Low_complexity 1 55 0 9 1397 315 333 93 40 chr11 106524927 106525077 -15318779 + HAL1-3A_ME LINE L1 2284 2441 -417 9 1397 616 279 13 13 chr11 106525581 106525737 -15318119 + ID_B1 SINE B4 9 164 -60 9 1397 198 128 0 0 chr11 106525737 106525776 -15318080 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 1397 295 219 53 27 chr11 106525847 106525922 -15317934 + B1F SINE Alu 1 77 -72 9 1397 1096 68 0 64 chr11 106526278 106526434 -15317422 + B1_Mus2 SINE Alu 1 146 -1 9 1397 201 39 0 0 chr11 106526447 106526473 -15317383 + (CAA)n Simple_repeat Simple_repeat 2 27 0 9 1397 1436 78 5 10 chr11 106526484 106526678 -15317178 + B2_Mm1a SINE B2 1 193 0 9 1397 189 0 0 0 chr11 106526943 106526964 -15316892 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1397 391 261 22 11 chr11 106527149 106527238 -15316618 - PB1D7 SINE Alu -10 110 21 1 1397 219 316 0 60 chr11 106527343 106527367 -15316489 + B4A SINE B4 67 85 -207 1 1397 322 321 12 0 chr11 106527367 106527451 -15316405 + PB1D10 SINE Alu 1 85 -32 1 1397 235 213 0 47 chr11 106527456 106527520 -15316336 + GA-rich Low_complexity Low_complexity 3 63 0 1 1397 338 336 61 34 chr11 106527778 106527926 -15315930 - MER20 DNA MER1_type 0 219 68 1 1397 242 253 13 39 chr11 106527939 106528017 -15315839 + ID4 SINE ID 2 77 -6 1 1397 783 230 51 22 chr11 106528299 106528477 -15315379 + B3 SINE B2 2 184 -32 1 1397 362 39 0 38 chr11 106528504 106528557 -15315299 + (TTTTC)n Simple_repeat Simple_repeat 4 54 0 1 1397 1186 82 0 0 chr11 106528557 106528704 -15315152 - B1_Mus2 SINE Alu 0 147 1 1 1397 777 112 103 8 chr11 106528704 106528829 -15315027 - B1_Mur3 SINE Alu -11 138 1 1 1397 195 42 0 0 chr11 106528961 106528985 -15314871 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 1 1397 189 121 0 0 chr11 106529165 106529198 -15314658 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1397 329 256 13 0 chr11 106529199 106529277 -15314579 - ID_B1 SINE B4 -9 215 137 1 1397 258 274 39 100 chr11 106529277 106529329 -15314527 - B1F SINE Alu -9 140 19 1 1397 674 143 0 0 chr11 106529494 106529599 -15314257 - B1_Mus2 SINE Alu 0 147 43 1 1397 248 0 31 0 chr11 106530115 106530147 -15313709 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1 1397 257 265 63 81 chr11 106530170 106530187 -15313669 - MT2B LTR ERVL -338 263 207 1 1397 276 296 86 0 chr11 106530187 106530268 -15313588 - PB1D10 SINE Alu -29 88 1 1 1397 257 265 63 81 chr11 106530268 106530281 -15313575 - MT2B LTR ERVL -338 206 155 1 1397 565 226 97 8 chr11 106530302 106530436 -15313420 - B1_Mus1 SINE Alu 0 148 3 1 1397 601 242 32 25 chr11 106530476 106530633 -15313223 - RSINE1 SINE B4 -2 163 6 1 1397 269 246 108 89 chr11 106530766 106530980 -15312876 + L1MB3 LINE L1 5966 6183 0 1 1397 24 0 0 0 chr11 106531436 106531460 -15312396 + GC_rich Low_complexity Low_complexity 1 24 0 1 1397 284 272 122 73 chr11 106531516 106531639 -15312217 + MER5A DNA MER1_type 4 132 -57 1 1397 244 282 12 71 chr11 106531647 106531731 -15312125 - MIR3 SINE MIR -48 160 82 1 1397 947 223 5 48 chr11 106531867 106532074 -15311782 - B3 SINE B2 -18 198 1 1 1397 1192 55 0 27 chr11 106532113 106532262 -15311594 - B1_Mus2 SINE Alu -1 146 2 1 1397 371 313 37 22 chr11 106532272 106532406 -15311450 - ID_B1 SINE B4 -5 219 84 1 1397 1052 122 0 0 chr11 106532772 106532919 -15310937 + B1_Mus1 SINE Alu 2 148 0 1 1397 741 247 17 40 chr11 106533689 106533866 -15309990 - ID_B1 SINE B4 0 224 52 1 1397 405 244 0 12 chr11 106535215 106535298 -15308558 + ID4_ SINE ID 2 83 0 1 1397 749 269 65 85 chr11 106535317 106535610 -15308246 + B4A SINE B4 2 288 -4 1 1397 320 0 25 0 chr11 106535621 106535661 -15308195 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1397 252 264 233 0 chr11 106537287 106537416 -15306440 + L2 LINE L2 2326 2484 -935 1 1397 476 32 0 16 chr11 106537613 106537676 -15306180 + (TATG)n Simple_repeat Simple_repeat 1 62 0 1 1397 327 169 0 0 chr11 106537777 106537848 -15306008 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1397 504 32 0 0 chr11 106537944 106538006 -15305850 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1397 1168 68 0 20 chr11 106538009 106538159 -15305697 + B1_Mus1 SINE Alu 2 148 0 1 1397 422 302 39 71 chr11 106538244 106538426 -15305430 - B4 SINE B4 -116 176 1 1 1397 353 260 37 37 chr11 106538622 106538730 -15305126 - PB1D10 SINE Alu -8 109 2 1 1397 23 0 0 0 chr11 106539133 106539156 -15304700 + AT_rich Low_complexity Low_complexity 1 23 0 1 1397 840 276 109 20 chr11 106539868 106540216 -15303640 + MTEb LTR MaLR 1 379 0 1 1397 336 143 0 0 chr11 106540229 106540285 -15303571 + (CCA)n Simple_repeat Simple_repeat 1 56 0 1 1397 910 201 6 29 chr11 106540317 106540491 -15303365 - B3A SINE B2 -28 170 1 1 1397 685 211 54 13 chr11 106541299 106541448 -15302408 - B3 SINE B2 -60 156 2 1 1397 531 270 50 23 chr11 106541448 106541601 -15302255 - ID_B1 SINE B4 -59 233 81 1 1397 264 143 0 0 chr11 106541888 106541944 -15301912 + (TTTTTG)n Simple_repeat Simple_repeat 5 60 0 1 1397 550 227 48 28 chr11 106542142 106542287 -15301569 - B1_Mur1 SINE Alu -1 148 1 1 1397 423 0 0 0 chr11 106542461 106542508 -15301348 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1397 824 287 44 61 chr11 106542597 106542890 -15300966 - B4A SINE B4 0 292 5 1 1397 183 80 0 0 chr11 106543352 106543377 -15300479 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1397 508 229 20 59 chr11 106543506 106543659 -15300197 - B1F2 SINE Alu -2 147 1 1 1397 1215 67 0 0 chr11 106543745 106543895 -15299961 + B1_Mur4 SINE Alu 1 150 0 1 1397 299 290 10 61 chr11 106544348 106544447 -15299409 + B4A SINE B4 76 169 -123 1 1397 460 195 0 0 chr11 106544381 106544463 -15299393 + PB1D7 SINE Alu 19 100 -20 1 1397 403 235 20 53 chr11 106544469 106544579 -15299277 + PB1D10 SINE Alu 1 107 -13 1 1397 190 303 0 29 chr11 106545489 106545557 -15298299 + L2b LINE L2 3133 3198 -177 1 1397 231 170 0 0 chr11 106546990 106547037 -15296819 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1397 770 187 11 58 chr11 106547076 106547272 -15296584 + B3 SINE B2 2 184 -11 1 1397 693 211 0 0 chr11 106547418 106547527 -15296329 - PB1D9 SINE Alu -8 112 4 1 1397 402 216 159 92 chr11 106547527 106547607 -15296249 - MT2B LTR ERVL -443 158 68 1 1397 238 246 180 0 chr11 106547554 106547615 -15296241 - B1F1 SINE Alu -68 81 10 1 1397 288 0 0 0 chr11 106547942 106547974 -15295882 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1397 408 200 0 0 chr11 106547975 106548075 -15295781 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1397 408 213 62 31 chr11 106548127 106548224 -15295632 - RSINE1 SINE B4 -25 140 41 1 1397 315 282 277 0 chr11 106548632 106548827 -15295029 + MIR SINE MIR 12 260 -2 1 1397 949 115 36 0 chr11 106548874 106549013 -15294843 - B1_Mur4 SINE Alu -4 146 3 1 1397 477 268 73 8 chr11 106549144 106549268 -15294588 - ID_B1 SINE B4 -3 221 90 1 1397 693 196 304 0 chr11 106549351 106549509 -15294347 - B3 SINE B2 -10 206 1 1 1397 378 115 0 0 chr11 106550553 106550614 -15293242 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1397 489 173 27 0 chr11 106550651 106550726 -15293130 + ID4 SINE ID 6 82 -1 1 1397 431 230 57 25 chr11 106550704 106550829 -15293027 + PB1D9 SINE Alu 24 148 -1 1 1397 203 122 20 0 chr11 106550829 106550878 -15292978 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1397 816 221 0 7 chr11 106550945 106551091 -15292765 - B1_Mur3 SINE Alu -4 145 1 1 1397 225 0 0 0 chr11 106551100 106551125 -15292731 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1397 1271 14 14 0 chr11 106551125 106551271 -15292585 - B1_Mus1 SINE Alu 0 148 1 1 1397 339 314 18 45 chr11 106551310 106551420 -15292436 + PB1D10 SINE Alu 3 109 -8 1 1397 420 214 30 30 chr11 106551522 106551623 -15292233 - B3A SINE B2 -97 101 1 1 1397 189 0 0 0 chr11 106551631 106551652 -15292204 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1397 310 296 61 10 chr11 106551656 106551755 -15292101 - PB1D7 SINE Alu -16 104 1 1 1397 316 303 65 43 chr11 106551789 106551821 -15292035 - ID_B1 SINE B4 -1 223 87 1 1397 486 255 29 0 chr11 106551821 106551923 -15291933 - PB1D7 SINE Alu -10 110 6 1 1397 578 268 0 0 chr11 106551995 106552118 -15291738 - RSINE1 SINE B4 -40 125 3 1 1397 292 167 50 0 chr11 106552645 106552705 -15291151 + B1_Mur4 SINE Alu 79 141 -9 1 1397 279 0 0 0 chr11 106552705 106552736 -15291120 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1397 740 247 4 32 chr11 106552806 106552967 -15290889 - ID_B1 SINE B4 -52 240 81 1 1397 954 116 34 0 chr11 106553195 106553341 -15290515 + B2_Mm1t SINE B2 2 152 -41 1 1397 419 87 316 97 chr11 106553398 106553512 -15290344 + B2_Mm2 SINE B2 47 185 -10 1 1397 290 88 29 29 chr11 106553615 106553685 -15290171 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1397 366 211 300 9 chr11 106553766 106553876 -15289980 + B1_Mur2 SINE Alu 2 143 -6 1 1397 254 279 122 22 chr11 106554189 106554328 -15289528 - L2a LINE L2 -60 3366 3214 1 1397 558 301 18 12 chr11 106554330 106554495 -15289361 + ID_B1 SINE B4 55 220 -4 1 1397 269 222 0 0 chr11 106554500 106554545 -15289311 + B3A SINE B2 1 45 -153 1 1397 994 86 43 7 chr11 106554562 106554702 -15289154 - B1_Mus2 SINE Alu -1 146 2 1 1397 571 225 0 26 chr11 106554704 106554818 -15289038 + B3A SINE B2 32 142 -56 1 1397 270 0 0 0 chr11 106554833 106554863 -15288993 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1397 920 138 6 82 chr11 106554937 106555095 -15288761 - B1F2 SINE Alu 0 149 4 1 1397 809 190 0 60 chr11 106555111 106555262 -15288594 + B1_Mur3 SINE Alu 2 143 -6 1 1397 680 89 0 10 chr11 106555263 106555275 -15288581 + (GA)n Simple_repeat Simple_repeat 2 13 0 1 1397 2743 33 2 209 chr11 106555275 106555767 -15288089 + RLTR10 LTR ERVK 1 390 0 1 1397 680 89 0 10 chr11 106555767 106555856 -15288000 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 1397 2793 148 57 13 chr11 106555865 106556339 -15287517 + RLTR19 LTR ERVK 3 497 -2 2 1397 947 213 44 15 chr11 106556359 106556564 -15287292 + B3 SINE B2 2 212 -4 2 1397 206 337 119 30 chr11 106556692 106556793 -15287063 - MIR SINE MIR -93 169 60 2 1397 494 244 1 64 chr11 106556911 106557035 -15286821 - PB1D10 SINE Alu -28 119 2 2 1397 225 77 73 49 chr11 106557484 106557525 -15286331 - B3A SINE B2 -156 42 1 2 1397 842 229 18 18 chr11 106557537 106557706 -15286150 - B4 SINE B4 -68 224 56 2 1397 441 248 0 33 chr11 106557843 106557964 -15285892 - PB1D10 SINE Alu 0 117 1 2 1397 1148 61 6 58 chr11 106558052 106558208 -15285648 - B1_Mus1 SINE Alu 0 148 1 2 1397 256 200 0 0 chr11 106558221 106558271 -15285585 - ID_B1 SINE B4 -71 153 104 2 1397 927 170 0 7 chr11 106558926 106559074 -15284782 + B1_Mur2 SINE Alu 3 149 0 2 1397 234 91 0 0 chr11 106559134 106559167 -15284689 + (CGTG)n Simple_repeat Simple_repeat 1 33 0 2 1397 809 254 78 17 chr11 106559190 106559422 -15284434 - B4A SINE B4 -46 246 1 2 1397 917 106 13 8 chr11 106559506 106559657 -15284199 - B1_Mur3 SINE Alu -5 144 1 2 1397 546 289 25 25 chr11 106560044 106560207 -15283649 - RSINE1 SINE B4 -1 164 2 2 1397 819 203 13 26 chr11 106560275 106560427 -15283429 - B1_Mur4 SINE Alu 0 150 1 2 1397 507 135 58 12 chr11 106561277 106561449 -15282407 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 174 600 182 39 9 chr11 106561474 106561706 -15282150 + (CA)n Simple_repeat Simple_repeat 1 239 0 2 1398 244 318 0 0 chr11 106561871 106561934 -15281922 + CT-rich Low_complexity Low_complexity 1 63 0 2 1398 749 164 0 0 chr11 106561936 106562052 -15281804 - B1_Mus2 SINE Alu -31 116 1 2 1398 227 233 83 0 chr11 106562017 106562077 -15281779 - MT2B2 LTR ERVL -292 292 228 2 1398 1221 55 0 0 chr11 106562110 106562255 -15281601 + B1_Mm SINE Alu 2 146 -1 2 1398 182 132 0 50 chr11 106562258 106562298 -15281558 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1398 358 268 0 0 chr11 106562315 106562397 -15281459 + ID4_ SINE ID 2 83 0 2 1398 4234 171 81 23 chr11 106562593 106563405 -15280451 + RMER13A LTR ERVK 1 859 -1 2 1398 444 217 39 98 chr11 106563448 106563557 -15280299 - ID_B1 SINE B4 0 224 118 2 1398 1161 107 98 42 chr11 106563557 106563771 -15280085 - URR1A DNA MER1_type 0 226 1 2 1398 444 217 39 98 chr11 106563771 106563814 -15280042 - ID_B1 SINE B4 -107 117 81 2 1398 319 190 42 61 chr11 106563913 106564015 -15279841 + PB1D7 SINE Alu 1 99 -18 2 1398 1716 152 13 40 chr11 106564402 106564703 -15279153 + ORR1B2 LTR MaLR 75 367 0 2 1398 317 182 60 72 chr11 106564859 106564942 -15278914 + ID SINE ID 3 84 -140 2 1398 583 252 23 8 chr11 106564947 106565079 -15278777 + RSINE1 SINE B4 2 135 -30 2 1398 429 66 0 0 chr11 106565143 106565204 -15278652 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1398 468 198 75 9 chr11 106565518 106565625 -15278231 + B1F SINE Alu 36 149 0 2 1398 1109 76 0 27 chr11 106565627 106565776 -15278080 + B1_Mm SINE Alu 1 145 -2 2 1398 227 158 35 0 chr11 106565776 106565833 -15278023 + (CAA)n Simple_repeat Simple_repeat 1 59 0 2 1398 347 282 0 0 chr11 106566575 106566653 -15277203 + ID4 SINE ID 5 82 -1 2 1398 285 29 0 0 chr11 106566791 106566825 -15277031 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1398 1147 72 0 0 chr11 106566825 106566964 -15276892 - B1_Mus2 SINE Alu -8 139 1 2 1398 304 265 0 46 chr11 106567065 106567152 -15276704 - ID4_ SINE ID 0 83 1 2 1398 601 240 47 109 chr11 106567432 106567624 -15276232 - B3A SINE B2 -10 188 9 2 1398 813 183 42 7 chr11 106568087 106568230 -15275626 - B1_Mur1 SINE Alu 0 149 2 2 1398 1502 49 16 0 chr11 106568239 106568423 -15275433 - B2_Mm2 SINE B2 -6 189 3 2 1398 666 219 7 14 chr11 106568591 106568730 -15275126 + B1F2 SINE Alu 2 139 -10 2 1398 355 186 135 34 chr11 106568746 106568835 -15275021 + B3 SINE B2 1 98 -118 2 1398 24 0 0 0 chr11 106568848 106568872 -15274984 + AT_rich Low_complexity Low_complexity 1 24 0 2 1398 517 286 51 25 chr11 106568872 106569030 -15274826 + RSINE1 SINE B4 3 164 -1 2 1398 492 198 55 36 chr11 106569566 106569676 -15274180 - PB1D10 SINE Alu -1 116 5 2 1398 270 0 0 0 chr11 106569810 106569840 -15274016 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 1398 325 293 6 164 chr11 106569841 106570000 -15273856 - B1_Mus1 SINE Alu -14 134 1 2 1398 663 281 102 43 chr11 106570000 106570061 -15273795 - ID SINE ID -151 73 2 2 1398 367 126 8 37 chr11 106570473 106570553 -15273303 + B1_Mus2 SINE Alu 32 134 -13 2 1398 850 157 14 7 chr11 106571440 106571581 -15272275 + B1_Mur2 SINE Alu 1 142 -7 2 1398 686 174 7 0 chr11 106572799 106572937 -15270919 + CT-rich Low_complexity Low_complexity 1 139 0 2 1398 311 122 0 39 chr11 106572939 106572990 -15270866 - B1_Mur4 SINE Alu -5 145 97 2 1398 301 264 0 11 chr11 106572991 106573079 -15270777 + RLTR42-int LTR ERVK 4866 4952 -570 2 1398 375 78 0 0 chr11 106573645 106573696 -15270160 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1398 1048 114 0 45 chr11 106573696 106573852 -15270004 - B1_Mur3 SINE Alu 0 149 1 2 1398 191 250 0 14 chr11 106574088 106574157 -15269699 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1398 312 48 0 0 chr11 106574279 106574321 -15269535 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2 1398 795 247 35 0 chr11 106574402 106574576 -15269280 + ID_B1 SINE B4 4 183 -41 2 1398 297 297 17 67 chr11 106574486 106574605 -15269251 + B1_Mus1 SINE Alu 13 125 -23 2 1398 354 277 40 34 chr11 106574832 106574974 -15268882 + B1F SINE Alu 1 147 -2 2 1398 420 248 15 97 chr11 106575702 106575836 -15268020 - ID_B1 SINE B4 0 224 102 2 1398 248 288 78 78 chr11 106575704 106575870 -15267986 + YREP_Mm Unknown Unknown 162 327 -1485 2 1398 301 125 0 51 chr11 106577041 106577100 -15266756 - HAL1-3A_ME LINE L1 -828 2030 1975 2 1398 342 211 0 0 chr11 106577100 106577209 -15266647 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1398 549 289 54 34 chr11 106577293 106577440 -15266416 - RSINE1 SINE B4 -14 151 2 2 1398 258 256 159 23 chr11 106577520 106577608 -15266248 - B3A SINE B2 -98 100 1 2 1398 638 223 71 61 chr11 106578273 106578469 -15265387 + B3A SINE B2 1 198 0 2 1398 763 199 0 42 chr11 106578479 106578621 -15265235 + B1_Mus2 SINE Alu 12 147 0 2 1398 455 266 188 21 chr11 106578645 106578837 -15265019 + ID_B1 SINE B4 1 224 0 2 1398 448 241 115 43 chr11 106578845 106578984 -15264872 + B1_Mur2 SINE Alu 1 149 0 2 1398 682 122 0 31 chr11 106579112 106579239 -15264617 + CT-rich Low_complexity Low_complexity 3 125 0 2 1398 204 200 39 20 chr11 106579487 106579538 -15264318 + CT-rich Low_complexity Low_complexity 3 54 0 2 1398 1199 93 59 21 chr11 106579541 106579727 -15264129 - B2_Mm2 SINE B2 -2 193 1 2 1398 873 143 20 13 chr11 106579742 106579891 -15263965 - B1_Mur4 SINE Alu 0 150 1 2 1398 656 250 119 26 chr11 106579975 106580168 -15263688 + B3 SINE B2 4 214 -2 2 1398 1207 55 0 7 chr11 106580175 106580322 -15263534 + B1_Mus2 SINE Alu 2 147 0 2 1398 228 125 0 0 chr11 106580325 106580350 -15263506 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1398 1176 68 0 0 chr11 106580350 106580497 -15263359 + B1_Mm SINE Alu 1 147 0 2 1398 228 125 0 0 chr11 106580497 106580519 -15263337 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1398 381 278 113 0 chr11 106580548 106580681 -15263175 + RSINE1 SINE B4 3 150 -15 2 1398 350 159 14 0 chr11 106580918 106580987 -15262869 + CT-rich Low_complexity Low_complexity 1 70 0 2 1398 912 199 86 0 chr11 106582192 106582378 -15261478 + B3 SINE B2 1 202 -14 2 1398 440 216 68 61 chr11 106582419 106582567 -15261289 + B1F1 SINE Alu 1 149 0 2 1398 818 215 123 5 chr11 106582655 106582768 -15261088 + B3 SINE B2 8 135 -81 2 1398 1141 96 0 0 chr11 106582768 106582914 -15260942 - B1_Mus1 SINE Alu 0 148 3 2 1398 818 215 123 5 chr11 106582914 106582987 -15260869 + B3 SINE B2 136 215 -1 2 1398 225 0 0 0 chr11 106583043 106583068 -15260788 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1398 380 287 18 9 chr11 106583107 106583124 -15260732 - ID_B1 SINE B4 0 224 208 2 1398 213 39 0 0 chr11 106583124 106583150 -15260706 + (G)n Simple_repeat Simple_repeat 1 26 0 2 1398 380 287 18 9 chr11 106583150 106583241 -15260615 - ID_B1 SINE B4 -17 207 116 2 1398 567 285 28 7 chr11 106583286 106583431 -15260425 - B3 SINE B2 -2 214 67 2 1398 1120 107 53 6 chr11 106583453 106583622 -15260234 - B2_Mm2 SINE B2 -7 188 12 2 1398 1195 68 0 0 chr11 106583622 106583769 -15260087 + B1_Mus2 SINE Alu 1 147 0 2 1398 202 200 0 0 chr11 106584453 106584498 -15259358 + G-rich Low_complexity Low_complexity 1 45 0 2 1398 220 287 182 26 chr11 106584747 106584901 -15258955 - L3 LINE CR1 -821 3668 3491 2 1398 252 248 14 166 chr11 106584917 106585062 -15258794 - B1_Mur4 SINE Alu -22 128 6 2 1398 676 255 30 113 chr11 106584942 106585172 -15258684 - ID_B1 SINE B4 -13 211 1 2 1398 810 239 53 58 chr11 106585337 106585509 -15258347 - B4A SINE B4 -18 274 98 2 1398 2627 124 35 52 chr11 106585509 106585968 -15257888 - RLTR11B LTR ERVK 0 453 3 2 1398 810 239 53 58 chr11 106585968 106586021 -15257835 - B4A SINE B4 -195 97 50 2 1398 1214 68 0 0 chr11 106586388 106586535 -15257321 - B1_Mus1 SINE Alu 0 148 2 2 1398 731 93 93 0 chr11 106586571 106586678 -15257178 + U3 snRNA snRNA 1 117 -100 2 1398 363 90 13 107 chr11 106586780 106586930 -15256926 + (CAAA)n Simple_repeat Simple_repeat 1 136 0 2 1398 415 278 61 0 chr11 106586947 106587062 -15256794 + ID_B1 SINE B4 37 158 -66 3 1398 221 295 179 0 chr11 106586995 106587090 -15256766 + PB1D10 SINE Alu 6 117 0 3 1398 576 300 90 83 chr11 106587100 106587593 -15256263 + L1M2 LINE L1 2903 3338 -2805 3 1398 198 0 0 0 chr11 106588503 106588525 -15255331 + (C)n Simple_repeat Simple_repeat 1 22 0 3 1398 252 213 35 35 chr11 106589555 106589696 -15254160 + RMER17D2 LTR ERVK 235 375 -434 3 1398 300 257 37 37 chr11 106590079 106590188 -15253668 + L1MEg LINE L1 1843 1951 -4133 3 1398 329 301 0 0 chr11 106590323 106590406 -15253450 + ID_B1 SINE B4 130 212 -12 3 1398 1142 61 7 13 chr11 106590651 106590800 -15253056 + B1_Mus1 SINE Alu 1 148 0 3 1398 201 74 0 0 chr11 106590801 106590828 -15253028 + (GAA)n Simple_repeat Simple_repeat 2 28 0 3 1398 281 150 15 77 chr11 106590828 106590850 -15253006 + B4 SINE B4 117 138 -154 3 1398 2873 168 86 8 chr11 106590850 106590886 -15252970 - RMER15 LTR ERVL 0 575 534 3 1398 420 20 0 0 chr11 106590886 106590935 -15252921 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1398 2873 168 86 8 chr11 106590935 106591431 -15252425 - RMER15 LTR ERVL -42 533 2 3 1398 281 150 15 77 chr11 106591431 106591473 -15252383 + B4 SINE B4 139 177 -115 3 1398 530 235 27 11 chr11 106591516 106591643 -15252213 - PB1D7 SINE Alu -17 132 6 3 1398 326 316 0 0 chr11 106591668 106591744 -15252112 + BC1_Mm scRNA scRNA 16 91 -61 3 1398 466 268 141 0 chr11 106592432 106592574 -15251282 + ID_B1 SINE B4 49 210 -14 3 1398 352 309 89 0 chr11 106592464 106592587 -15251269 + B1F SINE Alu 15 148 -1 3 1398 525 262 41 8 chr11 106592808 106592931 -15250925 - RSINE1 SINE B4 -26 139 13 3 1398 621 242 17 0 chr11 106593261 106593381 -15250475 - B1F SINE Alu 0 149 28 3 1398 1263 98 0 0 chr11 106593381 106593657 -15250199 + (TG)n Simple_repeat Simple_repeat 1 276 0 3 1398 241 258 15 0 chr11 106593838 106593904 -15249952 - PB1D9 SINE Alu -7 113 47 3 1398 354 191 96 30 chr11 106593862 106593917 -15249939 - RMER17D LTR ERVK -369 520 463 3 1398 1150 85 0 0 chr11 106593917 106594058 -15249798 + B1_Mus2 SINE Alu 1 141 -6 3 1398 354 191 96 30 chr11 106594058 106594137 -15249719 - RMER17D LTR ERVK -427 462 377 3 1398 219 162 73 0 chr11 106594201 106594269 -15249587 + CT-rich Low_complexity Low_complexity 4 76 0 3 1398 1114 65 0 0 chr11 106594402 106594540 -15249316 + B1_Mm SINE Alu 6 143 -4 3 1398 567 0 0 0 chr11 106594541 106594604 -15249252 + (CAAAA)n Simple_repeat Simple_repeat 4 66 0 3 1398 317 313 51 69 chr11 106595246 106595421 -15248435 + Tigger12c DNA MER2_type 562 733 -1 3 1398 589 220 34 0 chr11 106595454 106595572 -15248284 + RSINE1 SINE B4 2 123 -42 3 1398 326 313 15 38 chr11 106595572 106595587 -15248269 + B2_Mm1t SINE B2 1 130 -63 3 1398 213 39 0 0 chr11 106595603 106595629 -15248227 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1398 590 236 32 16 chr11 106595695 106595820 -15248036 + B1_Mur3 SINE Alu 2 128 -21 3 1398 358 318 31 78 chr11 106596196 106596387 -15247469 + L1MD2 LINE L1 5781 5962 -397 3 1398 380 123 160 18 chr11 106596841 106596937 -15246919 - B2_Mm2 SINE B2 -18 175 47 3 1398 1210 95 47 0 chr11 106596988 106597157 -15246699 - B2_Mm1t SINE B2 -14 179 3 3 1398 25 22 0 43 chr11 106597160 106597190 -15246666 + AT_rich Low_complexity Low_complexity 1 29 0 3 1398 798 218 0 0 chr11 106597190 106597332 -15246524 + B1_Mur1 SINE Alu 1 142 -7 3 1398 25 22 0 43 chr11 106597332 106597348 -15246508 + AT_rich Low_complexity Low_complexity 1 16 0 3 1398 424 350 18 59 chr11 106597358 106597528 -15246328 - RSINE1 SINE B4 0 165 3 3 1398 235 220 213 32 chr11 106597669 106597763 -15246093 - PB1D9 SINE Alu -9 111 1 3 1398 522 227 52 78 chr11 106598891 106599044 -15244812 + B1F1 SINE Alu 1 149 0 3 1398 579 264 19 81 chr11 106599048 106599209 -15244647 + RSINE1 SINE B4 8 158 -7 3 1398 409 185 111 0 chr11 106599287 106599368 -15244488 - B1_Mus2 SINE Alu -5 142 53 3 1398 1455 142 44 68 chr11 106599328 106599668 -15244188 - RMER17C LTR ERVK -77 333 2 3 1398 589 146 134 84 chr11 106599690 106599832 -15244024 - B1_Mur2 SINE Alu 0 149 1 3 1398 295 324 69 41 chr11 106599870 106600015 -15243841 + RSINE1 SINE B4 2 150 -15 3 1398 242 281 18 0 chr11 106600079 106600134 -15243722 + PB1D10 SINE Alu 1 56 -61 3 1398 305 200 33 0 chr11 106600134 106600194 -15243662 + B3 SINE B2 2 63 -153 3 1398 1246 61 0 0 chr11 106600323 106600470 -15243386 + B1_Mus2 SINE Alu 1 147 0 3 1398 444 153 0 0 chr11 106600510 106600582 -15243274 - B1_Mur3 SINE Alu 0 149 78 3 1398 252 0 0 0 chr11 106600911 106600939 -15242917 + (C)n Simple_repeat Simple_repeat 1 28 0 3 1398 798 103 0 17 chr11 106601102 106601220 -15242636 + B1_Mur4 SINE Alu 34 149 -1 3 1398 191 103 26 0 chr11 106601250 106601289 -15242567 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 3 1398 317 309 11 11 chr11 106601293 106601388 -15242468 + L1ME2 LINE L1 5998 6092 -72 3 1398 336 274 83 25 chr11 106601483 106601603 -15242253 + B1F SINE Alu 18 144 -5 3 1398 506 203 181 48 chr11 106601737 106601903 -15241953 + B3 SINE B2 5 192 -24 3 1398 753 93 0 0 chr11 106601912 106602019 -15241837 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 3 1398 493 223 11 11 chr11 106602030 106602136 -15241720 + B1_Mur4 SINE Alu 1 101 -46 3 1398 1294 87 40 0 chr11 106602138 106602311 -15241545 + B2_Mm2 SINE B2 2 181 -14 3 1398 1289 34 0 0 chr11 106602322 106602468 -15241388 - B1_Mm SINE Alu 0 147 2 3 1398 1206 74 0 0 chr11 106602490 106602652 -15241204 + (GGAGAA)n Simple_repeat Simple_repeat 5 166 0 3 1398 393 186 14 0 chr11 106602962 106603032 -15240824 + B1_Mus2 SINE Alu 77 147 0 3 1398 709 194 12 0 chr11 106603032 106603192 -15240664 + GA-rich Low_complexity Low_complexity 2 163 0 3 1398 602 221 16 0 chr11 106603203 106603325 -15240531 + B1_Mur1 SINE Alu 1 124 -25 3 1398 367 305 11 0 chr11 106603319 106603414 -15240442 - PB1D10 SINE Alu -16 101 6 3 1398 1153 62 0 14 chr11 106603550 106603696 -15240160 + B1_Mus2 SINE Alu 4 147 0 3 1398 351 0 0 0 chr11 106603868 106603907 -15239949 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1398 258 360 0 51 chr11 106604060 106604177 -15239679 + B1F1 SINE Alu 1 111 -38 3 1398 597 14 0 0 chr11 106604243 106604313 -15239543 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1398 387 0 0 0 chr11 106604358 106604401 -15239455 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1398 528 298 8 8 chr11 106604465 106604597 -15239259 - ID_B1 SINE B4 0 224 93 3 1398 378 0 0 0 chr11 106604605 106604647 -15239209 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3 1398 317 279 101 0 chr11 106604647 106604726 -15239130 - ID_B1 SINE B4 -12 212 126 3 1398 230 150 0 24 chr11 106604774 106604815 -15239041 - ID SINE ID -180 44 5 3 1398 275 250 0 93 chr11 106604839 106604860 -15238996 - B1F SINE Alu -19 130 111 3 1398 3220 58 8 2 chr11 106604860 106605257 -15238599 - MTB LTR MaLR 0 400 2 3 1398 275 250 0 93 chr11 106605257 106605310 -15238546 - B1F SINE Alu -39 110 63 3 1398 510 230 30 0 chr11 106605491 106605591 -15238265 - PB1D9 SINE Alu 0 120 18 3 1398 801 31 0 0 chr11 106605593 106605689 -15238167 + (TCTCCC)n Simple_repeat Simple_repeat 1 96 0 3 1398 917 279 15 0 chr11 106605701 106605902 -15237954 - ID_B1 SINE B4 -16 208 5 3 1398 355 308 177 57 chr11 106605994 106606259 -15237597 + LTR16A1 LTR ERVL 147 443 -13 3 1398 903 298 10 0 chr11 106606380 106606588 -15237268 - B3 SINE B2 -1 215 6 3 1398 1245 34 7 0 chr11 106606638 106606784 -15237072 + B1_Mm SINE Alu 1 147 0 3 1398 316 107 26 13 chr11 106606784 106606860 -15236996 + (CAAAAA)n Simple_repeat Simple_repeat 6 82 0 3 1398 439 188 71 14 chr11 106607215 106607347 -15236509 + L1_Mur2 LINE L1 896 1036 -6050 3 1398 1187 68 0 0 chr11 106607347 106607494 -15236362 + B1_Mus2 SINE Alu 1 147 0 3 1398 1432 161 111 0 chr11 106607515 106607871 -15235985 + L1_Mur2 LINE L1 1185 1570 -4307 3 1398 1218 68 0 0 chr11 106607871 106608018 -15235838 + B1_Mm SINE Alu 1 147 0 3 1398 1432 240 38 174 chr11 106608018 106608139 -15235717 + L1_Mur2 LINE L1 1554 1587 -4290 3 1398 1289 88 65 11 chr11 106608139 106608299 -15235557 + B2_Mm2 SINE B2 2 163 -32 3 1398 207 0 0 0 chr11 106608299 106608322 -15235534 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 3 1398 1289 88 65 11 chr11 106608322 106608345 -15235511 + B2_Mm2 SINE B2 164 195 0 3 1398 8671 141 44 160 chr11 106608345 106608597 -15235259 + L1_Mur2 LINE L1 1561 1770 -4107 3 1398 916 44 0 0 chr11 106608597 106608710 -15235146 - B1_Mus1 SINE Alu -2 146 34 3 1398 8671 141 44 160 chr11 106608710 106609123 -15234733 + L1_Mur2 LINE L1 1771 2117 -3760 3 1398 1227 90 38 33 chr11 106609123 106609307 -15234549 - B2_Mm1t SINE B2 -8 185 1 3 1398 806 112 122 34 chr11 106609307 106609455 -15234401 - B2_Mm2 SINE B2 -11 184 24 3 1398 8671 141 44 160 chr11 106609455 106610279 -15233577 + L1_Mur2 LINE L1 2118 3003 -2874 3 1398 1613 36 5 15 chr11 106610279 106610474 -15233382 + B2_Mm1t SINE B2 1 193 0 3 1398 8671 141 44 160 chr11 106610474 106611108 -15232748 + L1_Mur2 LINE L1 3004 3663 -2214 3 1398 1544 47 0 20 chr11 106611108 106611304 -15232552 + B2_Mm1a SINE B2 1 192 -1 3 1398 8671 141 44 160 chr11 106611304 106611384 -15232472 + L1_Mur2 LINE L1 3664 3740 -2137 3 1398 305 100 20 0 chr11 106611639 106611689 -15232167 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1398 344 306 72 45 chr11 106611934 106612198 -15231658 - RMER17D LTR ERVK -258 631 361 3 1398 775 75 0 36 chr11 106612207 106612318 -15231538 + B2_Mm2 SINE B2 1 107 -88 3 1398 590 136 72 9 chr11 106612749 106612860 -15230996 + B1_Mur1 SINE Alu 31 148 -1 3 1398 400 240 148 8 chr11 106613297 106613419 -15230437 - ID_B1 SINE B4 0 224 86 3 1398 417 281 104 0 chr11 106613752 106613848 -15230008 - B1F SINE Alu -14 135 30 3 1398 248 319 8 33 chr11 106614160 106614280 -15229576 + YREP_Mm Unknown Unknown 178 294 -1518 3 1398 539 198 0 10 chr11 106614179 106614281 -15229575 - ID_B1 SINE B4 -21 203 103 3 1398 479 263 0 138 chr11 106614728 106614909 -15228947 - MTEa LTR MaLR -28 351 196 3 1398 2519 133 44 21 chr11 106614909 106615369 -15228487 - RMER6A LTR ERVK 0 756 220 4 1398 322 220 118 21 chr11 106615369 106615462 -15228394 - PB1D9 SINE Alu -16 104 3 4 1398 1559 256 112 82 chr11 106615462 106615648 -15228208 - RMER6A LTR ERVK -372 318 5 4 1398 641 249 123 12 chr11 106615676 106615847 -15228009 - MTEa LTR MaLR -185 194 5 3 1398 827 259 56 5 chr11 106615849 106616047 -15227809 - ID_B1 SINE B4 -15 209 2 4 1398 369 200 0 0 chr11 106616501 106616566 -15227290 + CT-rich Low_complexity Low_complexity 1 65 0 4 1398 1072 84 11 22 chr11 106616566 106616748 -15227108 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1398 1172 88 6 0 chr11 106616756 106616927 -15226929 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 4 1398 541 177 77 130 chr11 106617366 106617535 -15226321 + RSINE1 SINE B4 3 162 -3 4 1398 301 247 21 105 chr11 106617589 106617684 -15226172 + MT2B LTR ERVL 153 239 -362 4 1398 784 167 0 15 chr11 106617615 106617749 -15226107 + B1_Mur1 SINE Alu 17 148 -1 4 1398 443 271 41 35 chr11 106617741 106617886 -15225970 - MER3 DNA MER1_type -58 151 6 4 1398 676 249 62 67 chr11 106617969 106618193 -15225663 - MTEb LTR MaLR 0 379 157 4 1398 612 193 109 0 chr11 106618207 106618326 -15225530 - B1_Mur1 SINE Alu -5 144 13 4 1398 652 311 16 0 chr11 106618328 106618511 -15225345 - MTEb LTR MaLR -193 186 1 4 1398 433 252 8 86 chr11 106619438 106619555 -15224301 - ID_B1 SINE B4 0 224 117 4 1398 746 222 78 50 chr11 106619683 106619863 -15223993 + B3 SINE B2 1 185 -31 4 1398 322 202 141 12 chr11 106619848 106619933 -15223923 - B1_Mus1 SINE Alu -51 97 2 4 1398 1108 127 6 17 chr11 106619951 106619971 -15223885 - B2_Mm1t SINE B2 -19 174 156 4 1398 189 0 0 0 chr11 106619971 106619992 -15223864 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 4 1398 1331 20 0 0 chr11 106619992 106620147 -15223709 - B2_Mm2 SINE B2 -38 155 1 4 1398 761 140 35 0 chr11 106620235 106620349 -15223507 + B1_Mur4 SINE Alu 33 150 0 4 1398 208 158 0 34 chr11 106620349 106620408 -15223448 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 4 1398 487 304 35 0 chr11 106620640 106620755 -15223101 + RSINE1 SINE B4 14 132 -33 4 1398 3751 95 28 63 chr11 106620790 106621395 -15222461 + MT2B2 LTR ERVL 1 584 0 4 1398 1108 90 0 0 chr11 106621439 106621583 -15222273 - B1_Mus2 SINE Alu 0 147 4 4 1398 1008 115 0 7 chr11 106621631 106621780 -15222076 + B1_Mus1 SINE Alu 1 148 0 4 1398 31 44 0 0 chr11 106621781 106621826 -15222030 + AT_rich Low_complexity Low_complexity 1 45 0 4 1398 375 225 88 0 chr11 106621848 106621928 -15221928 + ID_B1 SINE B4 97 183 -41 4 1398 201 74 0 0 chr11 106622675 106622702 -15221154 + (TGG)n Simple_repeat Simple_repeat 1 27 0 4 1398 730 164 41 0 chr11 106622702 106622824 -15221032 + B1_Mur3 SINE Alu 16 142 -7 4 1398 360 0 0 0 chr11 106622825 106622865 -15220991 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1398 263 225 81 75 chr11 106623046 106623164 -15220692 - B1F1 SINE Alu 0 117 1 4 1398 574 316 42 0 chr11 106623172 106623365 -15220491 - ID_B1 SINE B4 -8 216 16 4 1398 392 248 112 14 chr11 106623616 106623759 -15220097 - L1MB3 LINE L1 -128 6055 5899 4 1398 349 164 221 0 chr11 106623761 106623865 -15219991 - ID_B1 SINE B4 0 224 98 4 1398 230 264 0 27 chr11 106623853 106623927 -15219929 - ID2 SINE ID -5 78 7 4 1398 545 298 23 35 chr11 106624688 106624722 -15219134 + ID_B1 SINE B4 53 224 0 4 1398 880 171 0 0 chr11 106624722 106624862 -15218994 + B1_Mur4 SINE Alu 11 150 0 4 1398 221 329 48 48 chr11 106625324 106625407 -15218449 - ID_B1 SINE B4 -117 107 25 4 1398 191 36 0 35 chr11 106625422 106625451 -15218405 + (TAAAA)n Simple_repeat Simple_repeat 1 28 0 4 1398 499 252 35 18 chr11 106625708 106625821 -15218035 - PB1D10 SINE Alu -1 116 2 4 1398 356 248 174 0 chr11 106625865 106625965 -15217891 - B1F SINE Alu -20 129 17 4 1398 422 200 11 23 chr11 106625968 106626055 -15217801 - U6 snRNA snRNA -21 86 1 4 1398 568 289 30 35 chr11 106626835 106627032 -15216824 + B3A SINE B2 3 198 0 4 1398 243 0 0 0 chr11 106627067 106627094 -15216762 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1398 180 0 0 0 chr11 106627116 106627136 -15216720 + (TCTA)n Simple_repeat Simple_repeat 4 23 0 4 1398 1302 61 0 0 chr11 106627141 106627305 -15216551 - B2_Mm2 SINE B2 -30 165 2 4 1398 291 129 318 16 chr11 106627314 106627377 -15216479 - B1_Mus2 SINE Alu -6 141 60 4 1398 452 155 9 157 chr11 106627363 106627478 -15216378 + MT2B LTR ERVL 160 257 -344 4 1398 1018 118 0 7 chr11 106627377 106627522 -15216334 + B1_Mur4 SINE Alu 6 149 -1 4 1398 672 293 144 31 chr11 106627637 106627894 -15215962 + B4A SINE B4 4 289 -3 4 1398 306 0 0 0 chr11 106627894 106627928 -15215928 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1398 488 122 14 0 chr11 106628416 106628490 -15215366 + PB1D10 SINE Alu 43 117 0 4 1398 504 286 14 108 chr11 106628666 106628706 -15215150 + B3A SINE B2 1 35 -163 4 1398 1336 85 21 11 chr11 106628706 106628896 -15214960 + B2_Mm1t SINE B2 2 193 0 4 1398 504 286 14 108 chr11 106628896 106629067 -15214789 + B3A SINE B2 36 192 -6 4 1398 963 163 0 0 chr11 106629087 106629234 -15214622 - B1_Mus2 SINE Alu 0 147 1 4 1398 1345 84 372 4 chr11 106629257 106629496 -15214360 - ORR1A2 LTR MaLR 0 327 1 4 1398 1210 54 0 0 chr11 106630270 106630417 -15213439 + B1_Mus1 SINE Alu 2 148 0 4 1398 1033 216 44 5 chr11 106630451 106630656 -15213200 - B3 SINE B2 -3 213 1 4 1398 529 223 17 43 chr11 106630672 106630789 -15213067 + ID_B1 SINE B4 80 193 -31 4 1398 284 289 37 37 chr11 106630693 106630801 -15213055 + B1_Mur4 SINE Alu 20 127 -23 4 1398 1092 306 48 62 chr11 106630820 106631233 -15212623 + RLTR18B LTR ERVK 24 340 -276 4 1398 1330 97 21 0 chr11 106631233 106631419 -15212437 - B2_Mm1t SINE B2 -3 190 1 4 1398 1092 288 33 67 chr11 106631419 106631648 -15212208 + RLTR18B LTR ERVK 289 512 0 4 1398 697 158 42 0 chr11 106631695 106631815 -15212041 + B3 SINE B2 91 215 -1 4 1398 234 0 0 0 chr11 106631817 106631843 -15212013 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1398 517 236 27 0 chr11 106632164 106632274 -15211582 - PB1D7 SINE Alu -2 118 6 4 1398 28 29 0 0 chr11 106632369 106632404 -15211452 + AT_rich Low_complexity Low_complexity 1 35 0 4 1398 300 283 54 23 chr11 106632524 106632654 -15211202 + B1F SINE Alu 1 134 -15 4 1398 225 0 0 0 chr11 106632691 106632716 -15211140 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 4 1398 249 167 24 0 chr11 106632797 106632839 -15211017 - MER46C DNA MER2_type -10 328 286 4 1398 23 0 0 0 chr11 106632864 106632887 -15210969 + AT_rich Low_complexity Low_complexity 1 23 0 4 1398 1632 32 16 0 chr11 106633215 106633405 -15210451 + B2_Mm1a SINE B2 1 193 0 4 1398 555 258 131 14 chr11 106633485 106633676 -15210180 - B3 SINE B2 -6 189 8 4 1398 216 0 0 0 chr11 106633710 106633734 -15210122 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1398 523 241 102 0 chr11 106633736 106633873 -15209983 - B3A SINE B2 -47 151 1 4 1398 331 140 302 42 chr11 106634554 106634673 -15209183 + RSINE1 SINE B4 8 157 -8 4 1398 248 270 0 135 chr11 106635107 106635127 -15208729 - MT2B LTR ERVL -333 268 208 4 1398 483 235 10 0 chr11 106635127 106635225 -15208631 - PB1D9 SINE Alu -20 100 2 4 1398 248 270 0 135 chr11 106635225 106635240 -15208616 - MT2B LTR ERVL -333 207 154 4 1398 839 158 27 0 chr11 106635461 106635607 -15208249 - B1_Mur4 SINE Alu 0 150 1 4 1398 258 355 44 26 chr11 106635691 106635804 -15208052 - RSINE1 SINE B4 -40 125 11 4 1398 280 258 107 84 chr11 106635828 106635959 -15207897 - MT2B2 LTR ERVL -344 240 107 4 1398 786 192 105 16 chr11 106635970 106636160 -15207696 + B3 SINE B2 2 208 -8 4 1398 450 276 151 28 chr11 106636164 106636488 -15207368 + L1MC4a LINE L1 7291 7654 -228 4 1398 242 269 190 13 chr11 106636962 106637041 -15206815 - PB1D9 SINE Alu -1 119 27 4 1398 257 257 53 13 chr11 106637233 106637308 -15206548 + ID4_ SINE ID 5 82 -1 4 1398 376 261 115 0 chr11 106637329 106637459 -15206397 + B1F SINE Alu 5 149 0 4 1398 382 283 174 8 chr11 106637462 106637583 -15206273 + RSINE1 SINE B4 3 143 -22 4 1398 23 33 0 0 chr11 106637629 106637659 -15206197 + AT_rich Low_complexity Low_complexity 1 30 0 4 1398 559 161 127 0 chr11 106637659 106637777 -15206079 + B1_Mur4 SINE Alu 2 134 -16 4 1398 693 219 123 6 chr11 106637796 106637966 -15205890 - B3A SINE B2 -5 193 4 4 1398 1044 67 0 7 chr11 106638001 106638136 -15205720 + B1_Mus1 SINE Alu 2 135 -13 4 1398 391 273 116 8 chr11 106638279 106638408 -15205448 + ID_B1 SINE B4 81 223 -1 4 1398 243 0 0 0 chr11 106638636 106638663 -15205193 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1398 366 259 48 39 chr11 106638945 106639074 -15204782 + B1F SINE Alu 20 149 0 4 1398 572 99 0 2 chr11 106639081 106639202 -15204654 + B1_Mus2 SINE Alu 31 150 0 4 1398 256 278 0 151 chr11 106639128 106639234 -15204622 + B4 SINE B4 165 254 -38 4 1398 532 254 17 17 chr11 106639217 106639337 -15204519 + RSINE1 SINE B4 6 125 -40 4 1398 215 83 49 16 chr11 106639683 106639744 -15204112 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 4 1398 1220 61 0 0 chr11 106639762 106639909 -15203947 + B1_Mus1 SINE Alu 2 148 0 4 1398 186 43 0 0 chr11 106639909 106639932 -15203924 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1398 225 0 0 0 chr11 106640132 106640157 -15203699 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1398 508 59 487 0 chr11 106641298 106641417 -15202439 - B2_Mm2 SINE B2 0 195 19 4 1398 292 280 129 0 chr11 106641508 106641601 -15202255 + B1_Mur2 SINE Alu 9 113 -36 4 1398 656 86 276 0 chr11 106647166 106647271 -15196585 - B1_Mus2 SINE Alu -11 136 3 5 1398 29 28 0 0 chr11 106647976 106648012 -15195844 + AT_rich Low_complexity Low_complexity 1 36 0 5 1398 261 0 0 0 chr11 106649376 106649405 -15194451 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1398 253 203 232 0 chr11 106652513 106652582 -15191274 + B1_Mur2 SINE Alu 65 149 0 5 1398 466 222 0 53 chr11 106652636 106652750 -15191106 + B1_Mur4 SINE Alu 7 114 -36 5 1398 438 171 0 0 chr11 106652891 106652961 -15190895 + (TCTCTG)n Simple_repeat Simple_repeat 5 74 0 5 1398 273 220 0 33 chr11 106652961 106653022 -15190834 - PB1D9 SINE Alu -61 59 1 5 1398 508 193 193 0 chr11 106653171 106653290 -15190566 - B1_Mur1 SINE Alu -7 142 1 5 1398 283 294 53 0 chr11 106653353 106653435 -15190421 - PB1D10 SINE Alu -60 89 2 5 1398 239 274 0 73 chr11 106653390 106653445 -15190411 - B4A SINE B4 -161 131 81 5 1398 537 156 0 20 chr11 106654050 106654148 -15189708 - B1_Mus2 SINE Alu 0 147 52 5 1398 242 179 58 29 chr11 106654112 106654181 -15189675 + B1_Mur4 SINE Alu 75 145 -5 5 1398 753 180 204 23 chr11 106654307 106654483 -15189373 - B3 SINE B2 -6 210 3 5 1398 746 172 47 31 chr11 106654750 106654930 -15188926 - B3 SINE B2 -5 190 1 5 1398 360 0 0 0 chr11 106655225 106655265 -15188591 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1398 709 98 0 10 chr11 106655265 106655368 -15188488 - B1_Mus1 SINE Alu -44 104 3 5 1398 831 215 0 0 chr11 106655454 106655598 -15188258 - B1_Mur2 SINE Alu 0 149 6 5 1398 408 253 67 0 chr11 106655784 106655887 -15187969 - PB1D9 SINE Alu -36 113 3 5 1398 335 365 58 17 chr11 106655879 106655903 -15187953 - B4A SINE B4 -36 256 141 5 1398 404 312 80 0 chr11 106655903 106656041 -15187815 - B1F SINE Alu 0 149 1 5 1398 335 365 58 17 chr11 106656041 106656052 -15187804 - B4A SINE B4 -36 140 77 5 1398 702 295 14 27 chr11 106656745 106656968 -15186888 + ID_B1 SINE B4 2 221 -3 5 1398 233 178 44 0 chr11 106658108 106658153 -15185703 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 5 1398 285 288 30 0 chr11 106658157 106658223 -15185633 - ID_B1 SINE B4 -12 212 145 5 1398 715 143 51 103 chr11 106658225 106658381 -15185475 - B1_Mur3 SINE Alu 0 149 2 5 1398 459 202 0 0 chr11 106659023 106659107 -15184749 - RSINE1 SINE B4 -62 103 20 5 1398 279 104 0 0 chr11 106659112 106659160 -15184696 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1398 1235 86 11 22 chr11 106659188 106659366 -15184490 - B2_Mm1t SINE B2 -5 188 13 5 1398 341 265 44 44 chr11 106659420 106659553 -15184303 + B1_Mus2 SINE Alu 1 131 -18 5 1398 2027 157 82 11 chr11 106659553 106659908 -15183948 - ORR1C2 LTR MaLR 0 384 5 5 1398 1171 68 0 13 chr11 106660062 106660211 -15183645 - B1_Mm SINE Alu 0 147 1 5 1398 608 247 46 7 chr11 106660996 106661147 -15182709 + RSINE1 SINE B4 3 159 -6 5 1398 216 97 0 0 chr11 106661613 106661644 -15182212 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1398 1286 27 0 0 chr11 106661644 106661791 -15182065 - B1_Mm SINE Alu 0 147 1 5 1398 392 220 100 0 chr11 106661813 106661913 -15181943 - PB1D9 SINE Alu -5 115 6 5 1398 291 54 0 0 chr11 106661932 106661969 -15181887 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 5 1398 368 134 3 5 chr11 106661969 106662031 -15181825 - PB1D9 SINE Alu -2 125 62 5 1398 661 193 0 17 chr11 106662034 106662150 -15181706 + B1_Mus2 SINE Alu 18 131 -16 5 1398 201 74 0 0 chr11 106662150 106662177 -15181679 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 5 1398 912 120 84 73 chr11 106662295 106662474 -15181382 - B2_Mm2 SINE B2 -14 181 1 5 1398 296 211 42 0 chr11 106662602 106662673 -15181183 - ID SINE ID -150 74 1 5 1398 204 67 0 0 chr11 106662904 106662934 -15180922 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 5 1398 1246 41 0 0 chr11 106662946 106663092 -15180764 - B1_Mm SINE Alu 0 147 2 5 1398 359 302 154 0 chr11 106663949 106664098 -15179758 + MIR3 SINE MIR 28 199 -9 5 1398 389 325 58 13 chr11 106664255 106664411 -15179445 + RSINE1 SINE B4 3 165 0 5 1398 22 35 0 0 chr11 106664437 106664466 -15179390 + AT_rich Low_complexity Low_complexity 1 29 0 5 1398 2118 148 96 8 chr11 106664466 106664841 -15179015 + MTC LTR MaLR 6 413 -8 5 1398 286 282 66 88 chr11 106664852 106664878 -15178978 + MT2B LTR ERVL 125 153 -448 5 1398 1369 109 0 5 chr11 106664878 106665072 -15178784 + B2_Mm2 SINE B2 2 194 -1 5 1398 286 282 66 88 chr11 106665072 106665181 -15178675 + MT2B LTR ERVL 154 257 -344 5 1398 888 167 0 0 chr11 106665088 106665226 -15178630 + B1_Mur4 SINE Alu 13 150 0 5 1398 1236 102 11 0 chr11 106665257 106665434 -15178422 + B2_Mm1t SINE B2 1 179 -14 5 1398 312 142 355 36 chr11 106665481 106665591 -15178265 + B2_Mm1t SINE B2 48 192 -1 5 1398 442 284 53 26 chr11 106666478 106666630 -15177226 - RSINE1 SINE B4 -7 158 3 5 1398 24 0 0 0 chr11 106666640 106666664 -15177192 + AT_rich Low_complexity Low_complexity 1 24 0 5 1398 2242 105 6 66 chr11 106666666 106667014 -15176842 - ORR1A2 LTR MaLR 0 327 1 5 1398 582 212 20 40 chr11 106667021 106667173 -15176683 + B1F SINE Alu 1 149 0 5 1398 1603 37 0 16 chr11 106667286 106667479 -15176377 + B2_Mm1a SINE B2 1 190 -3 5 1398 223 264 40 53 chr11 106667793 106667869 -15175987 - ID4_ SINE ID -2 81 7 5 1398 350 287 33 57 chr11 106668214 106668336 -15175520 + PB1D7 SINE Alu 1 119 -1 5 1398 25 65 0 0 chr11 106668337 106668383 -15175473 + AT_rich Low_complexity Low_complexity 1 46 0 5 1398 412 218 8 91 chr11 106668400 106668521 -15175335 - B1_Mur1 SINE Alu -5 144 34 5 1398 1626 37 5 0 chr11 106668686 106668877 -15174979 + B2_Mm1t SINE B2 2 193 0 5 1398 702 197 178 11 chr11 106668911 106669096 -15174760 + B3 SINE B2 1 216 0 5 1398 607 162 0 0 chr11 106669147 106669246 -15174610 - B1_Mus2 SINE Alu -6 141 43 5 1398 250 371 141 0 chr11 106669386 106669556 -15174300 - MIRb SINE MIR -22 246 53 5 1398 494 228 122 30 chr11 106669807 106669938 -15173918 + B1_Mur1 SINE Alu 2 144 -5 5 1398 354 234 83 9 chr11 106670163 106670271 -15173585 + B1F1 SINE Alu 1 116 -33 5 1398 215 202 62 25 chr11 106670682 106670763 -15173093 + B4A SINE B4 1 84 -208 5 1398 23 33 0 0 chr11 106670787 106670817 -15173039 + AT_rich Low_complexity Low_complexity 1 30 0 5 1398 231 222 0 22 chr11 106671220 106671266 -15172590 + B1_Mur4 SINE Alu 6 50 -100 5 1398 408 69 0 0 chr11 106671292 106671350 -15172506 + B2_Mm2 SINE B2 1 58 -137 5 1398 1347 62 45 0 chr11 106671350 106671526 -15172330 - B2_Mm2 SINE B2 -10 185 2 5 1398 445 81 0 0 chr11 106671552 106671614 -15172242 - B2_Mm2 SINE B2 -63 132 71 5 1398 725 161 69 0 chr11 106671606 106671736 -15172120 + B1_Mus1 SINE Alu 10 148 0 5 1398 301 158 35 0 chr11 106671759 106671816 -15172040 + B1_Mus2 SINE Alu 89 147 0 5 1398 222 311 189 0 chr11 106672120 106672210 -15171646 - B1F2 SINE Alu -36 113 7 5 1398 305 307 0 0 chr11 106672244 106672332 -15171524 + PB1D10 SINE Alu 21 108 -9 5 1398 456 62 0 0 chr11 106673215 106673279 -15170577 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1398 261 247 82 0 chr11 106673306 106673403 -15170453 - B4A SINE B4 0 292 188 5 1398 233 286 32 0 chr11 106673443 106673506 -15170350 - B4A SINE B4 -172 120 56 5 1398 21 36 0 0 chr11 106673636 106673664 -15170192 + AT_rich Low_complexity Low_complexity 1 28 0 5 1398 897 189 11 22 chr11 106674164 106674343 -15169513 + B3 SINE B2 16 192 -24 5 1398 186 71 0 0 chr11 106674431 106674459 -15169397 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1398 358 162 4 160 chr11 106674460 106674648 -15169208 - B1_Mur4 SINE Alu -1 147 1 5 1398 277 136 0 0 chr11 106674729 106674773 -15169083 + B4 SINE B4 28 71 -221 5 1398 299 277 12 0 chr11 106674763 106674846 -15169010 + B4A SINE B4 184 267 -25 5 1398 538 261 35 7 chr11 106675460 106675603 -15168253 + B1_Mur2 SINE Alu 1 147 -2 5 1398 388 280 180 0 chr11 106678573 106678762 -15165094 + L1M4 LINE L1 5379 5601 -577 5 1398 22 35 0 0 chr11 106680129 106680158 -15163698 + AT_rich Low_complexity Low_complexity 1 29 0 5 1398 232 209 0 0 chr11 106680493 106680536 -15163320 - PB1D10 SINE Alu -69 48 6 5 1398 357 282 80 1 chr11 106682367 106682514 -15161342 - ID_B1 SINE B4 -50 242 82 5 1398 381 204 136 0 chr11 106682837 106682940 -15160916 - PB1 SINE Alu -10 117 1 5 1398 481 117 209 64 chr11 106684717 106684827 -15159029 - B1_Mus1 SINE Alu -21 127 2 5 1398 1171 61 0 13 chr11 106684840 106684989 -15158867 - B1_Mm SINE Alu 0 147 1 5 1398 580 243 0 0 chr11 106684996 106685107 -15158749 - PB1D10 SINE Alu 0 117 7 5 1398 726 201 0 14 chr11 106686327 106686473 -15157383 - B1_Mus1 SINE Alu 0 148 5 5 1398 465 259 65 0 chr11 106686641 106686749 -15157107 + PB1D7 SINE Alu 1 115 -5 5 1398 736 152 49 28 chr11 106687009 106687151 -15156705 + B1_Mus2 SINE Alu 2 146 -1 5 1398 282 29 0 0 chr11 106687301 106687336 -15156520 + (TAGG)n Simple_repeat Simple_repeat 4 38 0 5 1398 537 322 27 0 chr11 106687340 106687486 -15156370 - RSINE1 SINE B4 -14 151 2 5 1398 966 70 8 8 chr11 106687577 106687699 -15156157 + B1_Mus2 SINE Alu 1 123 -24 5 1398 207 0 0 0 chr11 106687699 106687722 -15156134 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1398 1867 117 58 13 chr11 106687773 106688085 -15155771 + ORR1A4 LTR MaLR 4 329 0 6 1398 659 228 102 24 chr11 106688347 106688513 -15155343 + B3A SINE B2 2 180 -18 6 1398 25 65 0 0 chr11 106688522 106688568 -15155288 + AT_rich Low_complexity Low_complexity 1 46 0 6 1398 507 175 48 0 chr11 106688694 106688797 -15155059 - PB1D10 SINE Alu -5 112 5 6 1398 352 256 92 17 chr11 106689137 106689256 -15154600 + RSINE1 SINE B4 9 136 -29 6 1398 472 196 201 39 chr11 106689480 106689634 -15154222 + B3A SINE B2 1 179 -19 6 1398 364 240 19 15 chr11 106690287 106690399 -15153457 + PB1D7 SINE Alu 1 112 -8 6 1398 25 31 0 0 chr11 106690613 106690645 -15153211 + AT_rich Low_complexity Low_complexity 1 32 0 6 1398 634 188 60 0 chr11 106690692 106690809 -15153047 - B3 SINE B2 -92 124 1 6 1398 962 199 44 0 chr11 106691504 106691685 -15152171 + B3 SINE B2 3 191 -25 6 1398 593 228 0 0 chr11 106691691 106691805 -15152051 + ID_B1 SINE B4 103 216 -8 6 1398 198 0 0 0 chr11 106692195 106692217 -15151639 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1399 1047 328 74 13 chr11 106693370 106693843 -15150013 + Lx8 LINE L1 6827 7328 -145 6 1399 518 198 19 9 chr11 106693864 106693971 -15149885 + B3 SINE B2 98 205 -11 6 1399 25 31 0 0 chr11 106694212 106694244 -15149612 + AT_rich Low_complexity Low_complexity 1 32 0 6 1399 1183 168 19 37 chr11 106694244 106694460 -15149396 - B3 SINE B2 -1 215 4 6 1399 611 272 24 82 chr11 106694570 106694778 -15149078 - B3A SINE B2 0 198 3 6 1399 636 224 99 35 chr11 106694822 106694993 -15148863 - B3A SINE B2 -16 182 1 6 1399 761 131 66 0 chr11 106695315 106695437 -15148419 + B3 SINE B2 1 130 -86 6 1399 23 33 0 0 chr11 106695481 106695511 -15148345 + AT_rich Low_complexity Low_complexity 1 30 0 6 1399 271 229 69 46 chr11 106696242 106696416 -15147440 - L1ME4a LINE L1 -19 6105 5928 6 1399 297 292 58 14 chr11 106696829 106696968 -15146888 - B1F SINE Alu 0 149 5 6 1399 243 230 297 0 chr11 106697016 106697090 -15146766 - PB1D10 SINE Alu -1 116 21 6 1399 249 269 15 0 chr11 106697215 106697282 -15146574 - L1ME4a LINE L1 -448 5676 5609 6 1399 32 0 0 0 chr11 106697559 106697591 -15146265 + AT_rich Low_complexity Low_complexity 1 32 0 6 1399 362 346 94 14 chr11 106697594 106697732 -15146124 - RSINE1 SINE B4 0 165 17 6 1399 378 225 38 0 chr11 106697739 106697819 -15146037 - B1_Mur3 SINE Alu -66 83 1 6 1399 473 191 11 0 chr11 106698137 106698231 -15145625 + B1_Mur2 SINE Alu 49 143 -6 6 1399 969 109 0 0 chr11 106698239 106698377 -15145479 + B1_Mus2 SINE Alu 1 138 -9 6 1399 225 267 0 0 chr11 106698616 106698661 -15145195 - ID SINE ID -150 74 30 6 1399 384 248 78 26 chr11 106698689 106698805 -15145051 - B1F SINE Alu 0 149 28 6 1399 1007 103 0 20 chr11 106698879 106699028 -15144828 - B1_Mm SINE Alu 0 147 2 6 1399 2585 246 14 30 chr11 106699623 106700263 -15143593 + Lx9 LINE L1 6568 7197 -447 6 1399 711 259 16 5 chr11 106700264 106700450 -15143406 + B3 SINE B2 28 215 -1 6 1399 467 198 9 45 chr11 106700872 106700983 -15142873 - B1F2 SINE Alu -34 115 9 6 1399 289 315 43 71 chr11 106700983 106701009 -15142847 - B4 SINE B4 -85 204 72 6 1399 1274 67 84 0 chr11 106701593 106701771 -15142085 - B2_Mm2 SINE B2 -2 193 1 6 1399 517 281 100 11 chr11 106701787 106701966 -15141890 - B3A SINE B2 -9 184 1 6 1399 402 127 28 0 chr11 106702242 106702313 -15141543 + B1_Mur4 SINE Alu 54 126 -24 6 1399 276 102 0 0 chr11 106702313 106702362 -15141494 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1399 211 191 16 16 chr11 106702371 106702435 -15141421 + GA-rich Low_complexity Low_complexity 1 64 0 6 1399 869 170 66 81 chr11 106702502 106702700 -15141156 + B2_Mm2 SINE B2 1 195 0 6 1399 526 215 90 30 chr11 106702707 106702841 -15141015 + B1_Mur1 SINE Alu 3 144 -5 6 1399 974 100 206 0 chr11 106703939 106704099 -15139757 - B2_Mm2 SINE B2 0 195 3 6 1399 259 257 29 0 chr11 106704873 106704943 -15138913 + ID_B1 SINE B4 140 211 -13 6 1399 234 269 54 36 chr11 106704976 106705088 -15138768 + PB1D10 SINE Alu 1 114 -3 6 1399 1441 89 16 0 chr11 106705143 106705334 -15138522 + B2_Mm2 SINE B2 2 195 0 6 1399 1229 54 0 0 chr11 106705472 106705620 -15138236 + B1_Mus1 SINE Alu 1 148 0 6 1399 25 51 0 0 chr11 106705800 106705839 -15138017 + AT_rich Low_complexity Low_complexity 1 39 0 6 1399 227 0 0 0 chr11 106705867 106705895 -15137961 + B1_Mus2 SINE Alu 111 138 -9 6 1399 198 0 0 0 chr11 106705895 106705917 -15137939 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1399 333 333 14 69 chr11 106705923 106706068 -15137788 + MT2B LTR ERVL 122 258 -343 6 1399 574 227 0 0 chr11 106705966 106706076 -15137780 + B1_Mus2 SINE Alu 2 111 -36 6 1399 427 254 45 53 chr11 106706076 106706092 -15137764 + B4 SINE B4 114 211 -81 6 1399 313 281 0 110 chr11 106707060 106707160 -15136696 + B1F SINE Alu 1 89 -60 6 1399 454 209 18 35 chr11 106708704 106708818 -15135038 + PB1D10 SINE Alu 6 117 0 6 1399 492 184 0 0 chr11 106708818 106708916 -15134940 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 1399 345 214 155 0 chr11 106708916 106709000 -15134856 + PB1D9 SINE Alu 16 112 -8 6 1399 207 0 0 0 chr11 106709004 106709027 -15134829 + (CACAA)n Simple_repeat Simple_repeat 2 24 0 6 1399 897 196 79 20 chr11 106709186 106709389 -15134467 + B3 SINE B2 2 216 0 6 1399 275 104 21 0 chr11 106709584 106709632 -15134224 + (TTTTC)n Simple_repeat Simple_repeat 3 51 0 6 1399 646 69 0 0 chr11 106709634 106709721 -15134135 - B1_Mus2 SINE Alu -7 140 54 6 1399 270 0 0 0 chr11 106710650 106710680 -15133176 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 6 1399 1185 68 0 0 chr11 106710682 106710828 -15133028 - B1_Mus2 SINE Alu 0 147 2 6 1399 264 250 33 67 chr11 106710868 106710898 -15132958 + MT2B2 LTR ERVL 139 164 -420 6 1399 613 223 85 0 chr11 106710898 106711028 -15132828 + B1_Mur1 SINE Alu 2 142 -7 6 1399 653 145 8 64 chr11 106711309 106711434 -15132422 + B1_Mur1 SINE Alu 27 144 -5 6 1399 356 285 43 21 chr11 106711675 106711815 -15132041 + B1F1 SINE Alu 4 146 -3 6 1399 190 98 73 0 chr11 106712200 106712241 -15131615 + T-rich Low_complexity Low_complexity 4 47 0 6 1399 1599 48 0 5 chr11 106712382 106712572 -15131284 - B2_Mm1t SINE B2 -4 189 1 6 1399 210 276 92 0 chr11 106712619 106712706 -15131150 - MIRb SINE MIR -67 201 107 6 1399 33 66 0 0 chr11 106712821 106712882 -15130974 + AT_rich Low_complexity Low_complexity 1 61 0 6 1399 343 282 108 39 chr11 106713379 106713508 -15130348 + ID_B1 SINE B4 79 216 -8 6 1399 818 158 13 20 chr11 106713547 106713696 -15130160 + B1_Mur4 SINE Alu 2 149 -1 6 1399 469 261 18 0 chr11 106714411 106714522 -15129334 - PB1D7 SINE Alu 0 120 8 6 1399 404 338 61 38 chr11 106714534 106714746 -15129110 + Tigger5 DNA MER2_type 26 242 -2164 6 1399 186 43 0 0 chr11 106714843 106714866 -15128990 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 6 1399 219 36 0 0 chr11 106714879 106714907 -15128949 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1399 1158 44 0 0 chr11 106714909 106715045 -15128811 - B1_Mus2 SINE Alu -11 136 1 6 1399 274 312 0 11 chr11 106715270 106715361 -15128495 - ID4 SINE ID -60 92 2 6 1399 267 296 28 0 chr11 106715393 106715464 -15128392 - PB1D7 SINE Alu -42 78 6 6 1399 710 271 75 5 chr11 106715490 106715690 -15128166 - B3 SINE B2 -2 214 1 6 1399 1116 214 97 13 chr11 106715919 106716227 -15127629 + Lx9 LINE L1 7287 7620 -24 6 1399 480 146 0 0 chr11 106716405 106716494 -15127362 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 6 1399 216 0 0 0 chr11 106716794 106716818 -15127038 + (G)n Simple_repeat Simple_repeat 1 24 0 6 1399 788 150 14 41 chr11 106717145 106717291 -15126565 + B1_Mur2 SINE Alu 1 142 -7 6 1399 45 45 0 0 chr11 106717313 106717379 -15126477 + AT_rich Low_complexity Low_complexity 1 66 0 6 1399 1058 232 0 9 chr11 106718088 106718305 -15125551 - B3 SINE B2 0 216 2 6 1399 654 184 0 17 chr11 106718579 106718695 -15125161 + B3A SINE B2 2 115 -83 6 1399 549 266 65 0 chr11 106718738 106718892 -15124964 - RSINE1 SINE B4 0 165 2 6 1399 584 230 68 1 chr11 106718931 106719074 -15124782 - B3A SINE B2 -59 157 1 6 1399 512 277 60 12 chr11 106719093 106719261 -15124595 - B3 SINE B2 -6 210 35 6 1399 311 341 35 21 chr11 106719268 106719409 -15124447 - B1F SINE Alu -5 144 2 6 1399 506 314 18 25 chr11 106719490 106719653 -15124203 + RSINE1 SINE B4 4 165 0 6 1399 21 89 0 0 chr11 106719743 106719799 -15124057 + AT_rich Low_complexity Low_complexity 1 56 0 6 1399 209 350 109 17 chr11 106719847 106719966 -15123890 + MIRb SINE MIR 32 161 -107 6 1399 733 137 130 0 chr11 106720023 106720154 -15123702 - B1_Mur2 SINE Alu -1 148 1 6 1399 808 132 0 73 chr11 106720551 106720730 -15123126 + Lx2 LINE L1 6831 6996 -1 6 1399 195 42 0 0 chr11 106720772 106720796 -15123060 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1399 579 214 49 21 chr11 106721183 106721326 -15122530 + B1F SINE Alu 1 147 -2 6 1399 1445 84 16 0 chr11 106721650 106721840 -15122016 + B2_Mm2 SINE B2 2 194 -1 6 1399 188 329 0 28 chr11 106722060 106722132 -15121724 + MIR3 SINE MIR 134 203 -5 7 1399 663 246 105 42 chr11 106722325 106722516 -15121340 - B3 SINE B2 -6 210 8 7 1399 365 331 7 7 chr11 106722537 106722680 -15121176 - B1F SINE Alu -6 143 1 7 1399 682 205 2 11 chr11 106722853 106722997 -15120859 - B1_Mus2 SINE Alu 0 149 8 7 1399 673 281 0 0 chr11 106722997 106723136 -15120720 - ID_B1 SINE B4 -5 219 81 7 1399 837 254 0 68 chr11 106723191 106723398 -15120458 - B3A SINE B2 -5 193 1 7 1399 328 303 34 0 chr11 106723406 106723495 -15120361 - B1F2 SINE Alu -49 100 9 7 1399 273 324 8 92 chr11 106723495 106723525 -15120331 - ID_B1 SINE B4 -46 178 70 7 1399 449 274 0 26 chr11 106723556 106723672 -15120184 + PB1D10 SINE Alu 1 113 -4 7 1399 320 129 11 56 chr11 106723708 106723798 -15120058 + (TATG)n Simple_repeat Simple_repeat 3 88 0 7 1399 402 278 62 76 chr11 106723969 106724113 -15119743 - B1F1 SINE Alu -7 142 1 7 1399 1435 33 43 11 chr11 106724487 106724671 -15119185 + B2_Mm2 SINE B2 2 191 -4 7 1399 1176 83 13 0 chr11 106724953 106725110 -15118746 - B2_Mm2 SINE B2 -34 161 3 7 1399 876 256 27 84 chr11 106725329 106725628 -15118228 - B4A SINE B4 -1 291 10 7 1399 447 19 0 0 chr11 106725640 106725692 -15118164 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1399 752 258 144 26 chr11 106725766 106725961 -15117895 + ID_B1 SINE B4 6 223 -1 7 1399 214 293 99 20 chr11 106726435 106726536 -15117320 + MIRb SINE MIR 154 262 -6 7 1399 342 138 0 0 chr11 106726560 106726618 -15117238 + (CATA)n Simple_repeat Simple_repeat 2 59 0 7 1399 442 103 0 14 chr11 106726674 106726743 -15117113 + B1_Mur3 SINE Alu 76 143 -6 7 1399 194 208 19 0 chr11 106726746 106726799 -15117057 + GA-rich Low_complexity Low_complexity 2 55 0 7 1399 190 274 60 86 chr11 106726820 106726936 -15116920 + MIRm SINE MIR 79 191 -85 7 1399 531 112 0 0 chr11 106727015 106727095 -15116761 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 7 1399 1353 47 0 6 chr11 106727096 106727267 -15116589 - B2_Mm1t SINE B2 -23 170 1 7 1399 23 0 0 0 chr11 106727533 106727556 -15116300 + AT_rich Low_complexity Low_complexity 1 23 0 7 1399 753 263 50 163 chr11 106727644 106728049 -15115807 + RMER10A LTR ERVL 17 383 -59 7 1399 763 162 43 22 chr11 106728049 106728188 -15115668 + B1_Mur4 SINE Alu 1 142 -8 7 1399 252 0 0 0 chr11 106728189 106728217 -15115639 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1399 753 263 50 163 chr11 106728217 106728268 -15115588 + RMER10A LTR ERVL 384 423 -19 7 1399 25 31 0 0 chr11 106728446 106728478 -15115378 + AT_rich Low_complexity Low_complexity 1 32 0 7 1399 429 90 0 0 chr11 106728529 106728596 -15115260 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 7 1399 1233 34 0 7 chr11 106728596 106728744 -15115112 - B1_Mus2 SINE Alu 0 147 1 7 1399 491 343 42 5 chr11 106729218 106729435 -15114421 - Lx8 LINE L1 -375 7098 6874 7 1399 23 54 0 0 chr11 106730015 106730052 -15113804 + AT_rich Low_complexity Low_complexity 1 37 0 7 1399 26 30 0 0 chr11 106730140 106730173 -15113683 + AT_rich Low_complexity Low_complexity 1 33 0 7 1399 693 221 159 23 chr11 106730775 106730951 -15112905 - ID_B1 SINE B4 0 224 25 7 1399 252 219 101 31 chr11 106730945 106731054 -15112802 - B1F2 SINE Alu -24 123 1 7 1399 477 0 0 0 chr11 106731208 106731261 -15112595 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1399 1332 46 104 0 chr11 106731348 106731521 -15112335 - B2_Mm1a SINE B2 -1 192 2 7 1399 239 172 62 108 chr11 106731832 106731897 -15111959 - PB1D10 SINE Alu -4 113 52 7 1399 287 224 0 0 chr11 106732241 106732308 -15111548 + L1M5 LINE L1 5378 5444 -718 7 1399 312 27 0 0 chr11 106732350 106732387 -15111469 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1399 245 301 71 51 chr11 106732481 106732579 -15111277 + ID_B1 SINE B4 77 176 -48 7 1399 305 263 65 13 chr11 106732504 106732581 -15111275 + PB1D10 SINE Alu 17 97 -20 7 1399 375 284 0 40 chr11 106732618 106732717 -15111139 + BC1_Mm scRNA scRNA 6 100 -52 7 1399 262 318 50 57 chr11 106733480 106733620 -15110236 - MIRb SINE MIR -63 205 67 7 1399 1184 165 10 15 chr11 106733627 106733830 -15110026 + URR1B DNA MER1_type 1 202 -23 7 1399 225 0 0 0 chr11 106733835 106733860 -15109996 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 7 1399 240 179 41 82 chr11 106734257 106734330 -15109526 + MTEa LTR MaLR 303 372 -7 7 1399 25 31 0 0 chr11 106734546 106734578 -15109278 + AT_rich Low_complexity Low_complexity 1 32 0 7 1399 451 281 141 0 chr11 106734588 106734773 -15109083 + B3 SINE B2 5 215 -1 7 1399 1193 157 19 5 chr11 106735828 106736033 -15107823 - B3 SINE B2 -7 209 2 7 1399 195 42 0 0 chr11 106736146 106736170 -15107686 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1399 929 130 69 29 chr11 106736170 106736338 -15107518 - B2_Mm2 SINE B2 -18 177 3 7 1399 227 278 56 0 chr11 106736489 106736510 -15107346 + PB1D10 SINE Alu 42 117 0 7 1399 229 255 0 0 chr11 106736510 106736561 -15107295 + ID_B1 SINE B4 174 224 0 7 1399 526 252 26 18 chr11 106736683 106736796 -15107060 + PB1D10 SINE Alu 3 116 -1 7 1399 22 56 0 0 chr11 106737330 106737366 -15106490 + AT_rich Low_complexity Low_complexity 1 36 0 7 1399 537 293 88 6 chr11 106737601 106737752 -15106104 + B3A SINE B2 2 167 -31 7 1399 288 0 0 0 chr11 106737752 106737784 -15106072 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1399 537 293 88 6 chr11 106737784 106737814 -15106042 + B3A SINE B2 168 198 0 7 1399 896 183 0 0 chr11 106737869 106738011 -15105845 - B1_Mur4 SINE Alu -8 142 1 7 1399 217 154 0 25 chr11 106738249 106738289 -15105567 - B3A SINE B2 -156 42 4 7 1399 21 36 0 0 chr11 106738443 106738471 -15105385 + AT_rich Low_complexity Low_complexity 1 28 0 7 1399 536 193 284 0 chr11 106738598 106738707 -15105149 - B1_Mur1 SINE Alu -7 142 3 7 1399 411 167 12 0 chr11 106739140 106739224 -15104632 + B1_Mur3 SINE Alu 65 149 0 7 1399 275 254 48 0 chr11 106739555 106739618 -15104238 + ID4_ SINE ID 3 68 -15 7 1399 182 312 12 72 chr11 106740257 106740340 -15103516 + L2a LINE L2 3348 3425 -1 7 1399 763 201 4 151 chr11 106740567 106740819 -15103037 + B3 SINE B2 2 216 0 7 1399 215 275 25 0 chr11 106740993 106741041 -15102815 + polypurine Low_complexity Low_complexity 3 51 0 7 1399 1357 100 5 10 chr11 106741041 106741233 -15102623 + B2_Mm1t SINE B2 2 192 -1 7 1399 215 275 25 0 chr11 106741233 106741264 -15102592 + polypurine Low_complexity Low_complexity 52 83 0 7 1399 243 0 0 0 chr11 106741292 106741319 -15102537 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1399 360 0 0 0 chr11 106741319 106741358 -15102498 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1399 740 262 57 31 chr11 106741429 106741622 -15102234 - B4A SINE B4 -94 198 1 7 1399 661 268 29 87 chr11 106741677 106741885 -15101971 - B3A SINE B2 -2 196 1 7 1399 185 132 0 26 chr11 106742246 106742285 -15101571 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 7 1399 1284 80 5 65 chr11 106742776 106742800 -15101056 - B2_Mm2 SINE B2 -6 189 170 7 1399 1062 89 0 40 chr11 106742800 106742952 -15100904 + B1_Mus2 SINE Alu 2 147 0 7 1399 209 57 0 28 chr11 106742957 106742993 -15100863 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1399 1284 80 5 65 chr11 106742993 106743162 -15100694 - B2_Mm2 SINE B2 -26 169 2 7 1399 472 334 61 15 chr11 106743197 106743408 -15100448 + MTEa LTR MaLR 51 266 -113 7 1399 615 247 19 52 chr11 106743596 106743750 -15100106 - B1_Mur1 SINE Alu 0 149 1 7 1399 474 288 75 17 chr11 106743938 106744111 -15099745 + B3A SINE B2 1 183 -15 7 1399 1287 198 137 41 chr11 106744144 106744487 -15099369 - ORR1C2 LTR MaLR -3 381 6 7 1399 272 272 4 0 chr11 106744544 106744606 -15099250 - B1F1 SINE Alu -47 70 8 7 1399 257 283 19 0 chr11 106744559 106744612 -15099244 - ID_B1 SINE B4 -89 135 82 7 1399 1536 34 0 0 chr11 106744789 106744967 -15098889 + B2_Mm1t SINE B2 3 180 -13 7 1399 699 75 0 0 chr11 106744967 106745061 -15098795 + (GA)n Simple_repeat Simple_repeat 2 95 0 7 1399 1331 82 33 0 chr11 106745389 106745572 -15098284 - B2_Mm2 SINE B2 -6 189 1 7 1399 314 276 63 31 chr11 106745784 106745911 -15097945 + B4 SINE B4 10 140 -152 7 1399 755 246 15 30 chr11 106746088 106746289 -15097567 - B3A SINE B2 0 198 1 7 1399 2458 159 5 19 chr11 106746425 106746842 -15097014 + MTC LTR MaLR 1 411 -10 7 1399 886 269 19 9 chr11 106746937 106747151 -15096705 + B3 SINE B2 1 216 0 7 1399 366 367 56 28 chr11 106747420 106747636 -15096220 + MIR SINE MIR 38 259 -3 7 1399 1016 266 92 31 chr11 106747717 106748043 -15095813 - MLT1A0 LTR MaLR 0 365 20 7 1399 655 200 0 70 chr11 106748471 106748600 -15095256 + RSINE1 SINE B4 4 123 -42 7 1399 210 143 0 0 chr11 106748939 106748974 -15094882 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 7 1399 536 252 78 18 chr11 106749422 106749594 -15094262 - B3A SINE B2 -2 193 28 7 1399 851 181 6 25 chr11 106749857 106750016 -15093840 + MTD LTR MaLR 210 365 -54 7 1399 352 214 14 28 chr11 106751715 106751787 -15092069 - ID_B1 SINE B4 -7 217 147 7 1399 601 176 114 103 chr11 106751788 106751972 -15091884 - B2_Mm2 SINE B2 -9 186 1 7 1399 441 217 254 16 chr11 106751977 106752099 -15091757 - ID_B1 SINE B4 -73 151 1 7 1399 543 254 27 61 chr11 106752243 106752390 -15091466 + ID_B1 SINE B4 80 221 -3 7 1399 222 241 51 85 chr11 106752339 106752398 -15091458 + PB1D7 SINE Alu 64 120 0 7 1399 534 84 0 31 chr11 106753124 106753222 -15090634 - L1Md_F2 LINE L1 -12 6570 6476 8 1399 309 191 0 0 chr11 106753594 106753699 -15090157 + (TATATG)n Simple_repeat Simple_repeat 2 106 0 8 1399 1118 108 60 0 chr11 106753725 106753891 -15089965 + B2_Mm1t SINE B2 3 178 -15 8 1399 339 146 8 28 chr11 106753934 106754050 -15089806 + B2_Mm2 SINE B2 47 195 0 8 1399 211 156 0 0 chr11 106754111 106754143 -15089713 + B1F2 SINE Alu 28 59 -90 8 1399 220 273 0 0 chr11 106754148 106754192 -15089664 + polypurine Low_complexity Low_complexity 3 46 0 8 1399 1116 76 14 0 chr11 106755389 106755533 -15088323 + B1_Mm SINE Alu 1 146 -1 8 1399 201 270 22 0 chr11 106755907 106755976 -15087880 + L2a LINE L2 3305 3426 0 8 1399 220 237 39 13 chr11 106756240 106756317 -15087539 + (TA)n Simple_repeat Simple_repeat 2 80 0 8 1399 517 279 161 8 chr11 106756725 106756967 -15086889 + B4A SINE B4 2 280 -12 8 1399 688 196 49 28 chr11 106757324 106757466 -15086390 + B1_Mur3 SINE Alu 2 146 -3 8 1399 363 289 121 30 chr11 106758387 106758519 -15085337 + RSINE1 SINE B4 1 144 -21 8 1399 276 30 0 0 chr11 106758532 106758565 -15085291 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1399 22 0 0 0 chr11 106758565 106758587 -15085269 + AT_rich Low_complexity Low_complexity 1 22 0 8 1399 193 254 45 45 chr11 106758599 106758665 -15085191 - L2 LINE L2 -1401 2018 1953 8 1399 1238 66 72 6 chr11 106758742 106758909 -15084947 + B2_Mm2 SINE B2 2 179 -16 8 1399 186 43 0 0 chr11 106758909 106758932 -15084924 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 8 1399 220 323 131 29 chr11 106759192 106759329 -15084527 - MIRb SINE MIR -3 265 115 8 1399 1043 167 97 15 chr11 106759629 106759835 -15084021 - URR1A DNA MER1_type -3 223 1 8 1399 452 273 102 36 chr11 106759928 106760065 -15083791 + ID_B1 SINE B4 58 203 -21 8 1399 270 0 0 0 chr11 106760073 106760103 -15083753 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 8 1399 405 73 44 0 chr11 106760168 106760236 -15083620 + B2_Mm1t SINE B2 121 191 -2 8 1399 426 214 36 0 chr11 106760294 106760378 -15083478 + PB1 SINE Alu 34 120 -7 8 1399 307 302 0 23 chr11 106760401 106760489 -15083367 + PB1D10 SINE Alu 32 117 0 8 1399 783 93 189 47 chr11 106760492 106760661 -15083195 + B2_Mm2 SINE B2 1 193 -2 8 1399 1150 48 14 0 chr11 106760680 106760826 -15083030 + B1_Mus1 SINE Alu 1 148 0 8 1399 192 77 0 0 chr11 106760976 106761002 -15082854 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 8 1399 590 283 8 8 chr11 106761112 106761240 -15082616 + ID_B1 SINE B4 3 130 -94 8 1399 252 0 0 0 chr11 106761348 106761376 -15082480 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1399 244 379 13 73 chr11 106761907 106762058 -15081798 - MLT1K LTR MaLR -441 154 13 8 1399 379 292 103 34 chr11 106762150 106762267 -15081589 + B1_Mur2 SINE Alu 4 128 -21 8 1399 318 336 32 64 chr11 106762362 106762518 -15081338 + B4A SINE B4 142 292 0 8 1399 682 202 0 0 chr11 106763006 106763120 -15080736 + RSINE1 SINE B4 14 127 -38 8 1399 1591 194 99 9 chr11 106763120 106763464 -15080392 - ORR1C1 LTR MaLR -2 376 2 8 1399 188 163 23 0 chr11 106763500 106763543 -15080313 + (CATA)n Simple_repeat Simple_repeat 3 46 0 8 1399 1181 62 0 0 chr11 106763579 106763723 -15080133 - B1_Mus1 SINE Alu -4 144 1 8 1399 30 27 0 0 chr11 106763723 106763760 -15080096 + AT_rich Low_complexity Low_complexity 1 37 0 8 1399 415 319 58 110 chr11 106763807 106764170 -15079686 + MER2 DNA MER2_type 2 345 0 8 1399 1470 57 16 5 chr11 106764227 106764420 -15079436 - B2_Mm2 SINE B2 0 195 1 8 1399 674 261 0 0 chr11 106764425 106764567 -15079289 - ID_B1 SINE B4 -3 221 80 8 1399 365 206 215 0 chr11 106764985 106765092 -15078764 + RSINE1 SINE B4 1 130 -35 8 1399 317 133 67 0 chr11 106765140 106765200 -15078656 + ID4_ SINE ID 3 66 -17 8 1399 724 172 39 0 chr11 106765228 106765356 -15078500 - B1_Mur2 SINE Alu 0 149 17 8 1399 1665 187 123 0 chr11 106765363 106765754 -15078102 + BGLII_B LTR ERVK 1 439 -2 8 1399 366 250 103 40 chr11 106766090 106766265 -15077591 - HAL1 LINE L1 -796 1711 1526 8 1399 315 374 149 35 chr11 106766397 106766685 -15077171 - HAL1 LINE L1 -1783 724 404 8 1399 879 32 122 0 chr11 106766841 106766964 -15076892 - B1_Mus1 SINE Alu 0 148 11 8 1399 419 239 40 50 chr11 106766993 106767008 -15076848 + L1MC3 LINE L1 7587 7600 -185 8 1399 3264 103 125 35 chr11 106767008 106767559 -15076297 + MT2B LTR ERVL 1 601 0 8 1399 419 239 40 50 chr11 106767559 106767741 -15076115 + L1MC3 LINE L1 7601 7782 -3 8 1399 726 229 78 26 chr11 106767752 106767945 -15075911 - B3 SINE B2 0 216 14 8 1399 297 219 0 59 chr11 106768173 106768241 -15075615 - B3 SINE B2 -118 98 35 8 1399 369 0 0 0 chr11 106768264 106768305 -15075551 + (TA)n Simple_repeat Simple_repeat 2 42 0 8 1399 486 0 0 0 chr11 106768319 106768373 -15075483 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1399 853 152 14 7 chr11 106768373 106768512 -15075344 - B1_Mur3 SINE Alu -9 140 1 8 1399 381 224 127 67 chr11 106768801 106768935 -15074921 + B1_Mur3 SINE Alu 1 142 -7 8 1399 650 256 96 30 chr11 106768992 106769189 -15074667 + B3 SINE B2 1 210 -6 8 1399 427 351 79 50 chr11 106769262 106769502 -15074354 + MLT1G LTR MaLR 6 252 -339 8 1399 371 281 74 25 chr11 106769551 106769743 -15074113 + MLT1G LTR MaLR 335 638 -15 8 1399 406 297 105 16 chr11 106769940 106770111 -15073745 + B3A SINE B2 36 216 0 8 1399 1086 8 0 0 chr11 106770253 106770376 -15073480 + (GGGGA)n Simple_repeat Simple_repeat 2 124 0 8 1399 741 124 16 40 chr11 106770718 106770844 -15073012 + B1_Mur4 SINE Alu 28 150 0 8 1399 897 146 7 0 chr11 106771028 106771172 -15072684 - B1_Mus1 SINE Alu -2 146 2 8 1399 269 239 93 132 chr11 106771198 106771305 -15072551 - B1F2 SINE Alu -1 119 17 8 1399 407 252 48 10 chr11 106771394 106771498 -15072358 - PB1D10 SINE Alu -1 116 9 8 1399 220 253 37 74 chr11 106771445 106771526 -15072330 - B4 SINE B4 -146 146 69 8 1399 854 240 67 0 chr11 106771521 106771700 -15072156 - B3 SINE B2 -10 206 16 8 1399 592 206 0 0 chr11 106771885 106771987 -15071869 + RSINE1 SINE B4 28 129 -36 8 1399 910 166 0 0 chr11 106772335 106772474 -15071382 + B1_Mus2 SINE Alu 1 139 -8 8 1399 1438 249 112 44 chr11 106772786 106773277 -15070579 + Lx7 LINE L1 6724 7245 -451 8 1399 3293 38 5 22 chr11 106773277 106773684 -15070172 + MTB LTR MaLR 1 400 0 8 1399 1438 249 112 44 chr11 106773684 106773763 -15070093 + Lx7 LINE L1 7246 7333 -363 8 1399 21 0 0 0 chr11 106773913 106773934 -15069922 + AT_rich Low_complexity Low_complexity 1 21 0 8 1399 491 248 73 24 chr11 106773985 106774109 -15069747 - B1F1 SINE Alu -13 136 7 8 1399 743 270 75 5 chr11 106774154 106774355 -15069501 + ID_B1 SINE B4 2 216 -8 8 1399 225 0 0 0 chr11 106774944 106774969 -15068887 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1399 243 0 0 0 chr11 106775218 106775245 -15068611 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1399 1141 58 0 0 chr11 106775247 106775386 -15068470 - B1_Mus2 SINE Alu -7 140 2 8 1399 526 269 35 9 chr11 106775386 106775502 -15068354 - RSINE1 SINE B4 -45 120 2 8 1399 229 283 109 59 chr11 106775555 106775670 -15068186 + PB1D10 SINE Alu 1 119 -1 8 1399 807 220 83 10 chr11 106775698 106775891 -15067965 + B3 SINE B2 4 210 -6 8 1399 1150 74 0 7 chr11 106775939 106776088 -15067768 + B1_Mus1 SINE Alu 1 148 0 8 1399 204 40 0 0 chr11 106776088 106776113 -15067743 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1399 446 238 81 8 chr11 106776132 106776255 -15067601 - B1_Mur2 SINE Alu -13 136 5 8 1399 22 41 0 39 chr11 106776431 106776456 -15067400 + AT_rich Low_complexity Low_complexity 1 25 0 8 1399 253 279 0 14 chr11 106776456 106776525 -15067331 + ID4_ SINE ID 2 69 -14 8 1399 22 41 0 39 chr11 106776525 106776550 -15067306 + AT_rich Low_complexity Low_complexity 1 24 0 8 1399 395 302 103 0 chr11 106776598 106776724 -15067132 + ID_B1 SINE B4 85 223 -1 8 1399 392 55 18 0 chr11 106776724 106776779 -15067077 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 8 1399 2240 148 70 13 chr11 106776837 106777235 -15066621 - MTC LTR MaLR 0 421 1 8 1399 286 297 116 25 chr11 106779200 106779321 -15064535 + RSINE1 SINE B4 11 142 -23 8 1399 324 0 0 0 chr11 106779324 106779360 -15064496 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1399 28 0 0 0 chr11 106779494 106779522 -15064334 + AT_rich Low_complexity Low_complexity 1 28 0 8 1399 747 182 24 0 chr11 106779534 106779660 -15064196 - B3 SINE B2 -86 130 2 8 1399 384 200 0 0 chr11 106779718 106779798 -15064058 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 8 1399 694 232 41 41 chr11 106780100 106780271 -15063585 - B3A SINE B2 -27 171 1 8 1399 237 83 0 0 chr11 106781553 106781589 -15062267 + (CGG)n Simple_repeat Simple_repeat 3 38 0 8 1399 195 69 0 0 chr11 106781594 106781623 -15062233 + (CGGG)n Simple_repeat Simple_repeat 3 31 0 8 1399 36 23 0 0 chr11 106781833 106781876 -15061980 + GC_rich Low_complexity Low_complexity 1 43 0 8 1399 243 61 0 0 chr11 106782020 106782053 -15061803 + (CCG)n Simple_repeat Simple_repeat 2 34 0 8 1399 210 97 40 53 chr11 106782067 106782143 -15061713 + G-rich Low_complexity Low_complexity 2 76 0 8 1399 1005 53 105 0 chr11 106782975 106783108 -15060748 + B1_Mus1 SINE Alu 2 148 0 8 1399 893 222 103 0 chr11 106783834 106784019 -15059837 + B3 SINE B2 2 205 -11 8 1399 331 294 0 0 chr11 106784085 106784153 -15059703 - ID4 SINE ID -6 77 10 8 1399 474 223 21 0 chr11 106784182 106784276 -15059580 - B1_Mur1 SINE Alu 0 149 54 9 1399 23 78 0 0 chr11 106784388 106784439 -15059417 + AT_rich Low_complexity Low_complexity 1 51 0 9 1399 26 0 0 0 chr11 106784842 106784868 -15058988 + AT_rich Low_complexity Low_complexity 1 26 0 9 1399 250 250 12 106 chr11 106784915 106785000 -15058856 + ID4_ SINE ID 5 81 -2 9 1399 301 231 0 0 chr11 106785013 106785065 -15058791 + ID_B1 SINE B4 152 203 -21 9 1399 1309 72 5 37 chr11 106785078 106785265 -15058591 + B2_Mm2 SINE B2 1 181 -14 9 1399 292 342 8 32 chr11 106785452 106785576 -15058280 - MER5A DNA MER1_type -2 187 67 9 1399 218 267 16 16 chr11 106785670 106785731 -15058125 - B4 SINE B4 -227 65 5 9 1399 286 275 43 0 chr11 106785777 106785846 -15058010 - ID4_ SINE ID -11 72 1 9 1399 455 259 27 0 chr11 106785857 106785969 -15057887 - B1F SINE Alu -5 144 30 9 1399 685 300 94 64 chr11 106786426 106786693 -15057163 + B4A SINE B4 18 292 0 9 1399 216 0 0 0 chr11 106787272 106787296 -15056560 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1399 391 317 48 0 chr11 106787512 106787616 -15056240 + B1F1 SINE Alu 3 111 -38 9 1399 304 265 186 0 chr11 106788019 106788121 -15055735 - MER5A DNA MER1_type -64 125 5 9 1399 277 0 0 85 chr11 106788546 106788593 -15055263 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 9 1399 857 289 5 0 chr11 106788593 106788794 -15055062 + MTD LTR MaLR 9 210 -209 9 1399 544 238 139 0 chr11 106788802 106788924 -15054932 + B3A SINE B2 6 144 -54 9 1399 486 0 0 0 chr11 106788934 106788988 -15054868 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1399 532 244 166 106 chr11 106789372 106789656 -15054200 + MLT1C LTR MaLR 1 301 -166 9 1399 1445 55 11 11 chr11 106789723 106789908 -15053948 + B2_Mm2 SINE B2 2 186 -9 9 1399 1136 99 42 42 chr11 106789932 106790121 -15053735 + B2_Mm2 SINE B2 2 190 -5 9 1399 534 185 8 70 chr11 106790165 106790293 -15053563 + PB1D9 SINE Alu 1 120 0 9 1399 470 31 16 0 chr11 106790294 106790358 -15053498 + (CAAAAA)n Simple_repeat Simple_repeat 1 65 0 9 1399 1028 200 22 0 chr11 106790358 106790538 -15053318 + B3 SINE B2 33 216 0 9 1399 1026 235 144 44 chr11 106790548 106790912 -15052944 - MTD LTR MaLR -44 375 1 9 1399 1064 275 55 11 chr11 106791251 106791523 -15052333 - B4A SINE B4 -8 284 1 9 1399 216 0 0 0 chr11 106791535 106791559 -15052297 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1399 1469 74 26 0 chr11 106792479 106792669 -15051187 + B2_Mm2 SINE B2 1 195 0 9 1399 672 186 0 0 chr11 106792715 106792892 -15050964 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1399 874 239 65 68 chr11 106792911 106793203 -15050653 - B4 SINE B4 0 292 2 9 1399 458 274 9 17 chr11 106793226 106793341 -15050515 + PB1D10 SINE Alu 1 114 -3 9 1399 1100 37 0 22 chr11 106793678 106793817 -15050039 - B1_Mm SINE Alu 0 147 12 9 1399 375 279 42 42 chr11 106793888 106793903 -15049953 + CYRA11_Mm Unknown Y-chromosome 158 172 -445 9 1399 929 197 160 0 chr11 106793903 106794091 -15049765 - URR1B DNA MER1_type -1 224 7 9 1399 529 160 184 0 chr11 106794322 106794447 -15049409 - B1F SINE Alu -1 148 1 9 1399 398 259 105 35 chr11 106794601 106794801 -15049055 + L1ME4a LINE L1 5624 5837 -287 9 1399 487 221 205 48 chr11 106795151 106795317 -15048539 - B3A SINE B2 -23 193 2 9 1399 512 271 45 8 chr11 106795342 106795476 -15048380 + ID_B1 SINE B4 76 214 -10 9 1399 572 258 6 54 chr11 106795455 106795475 -15048381 + ID_B1 SINE B4 65 224 0 9 1399 727 169 47 40 chr11 106795475 106795623 -15048233 + B1F2 SINE Alu 1 149 0 9 1399 208 257 35 35 chr11 106795623 106795692 -15048164 + A-rich Low_complexity Low_complexity 2 71 0 9 1399 1190 55 0 7 chr11 106795692 106795840 -15048016 + B1_Mm SINE Alu 1 147 0 9 1399 208 257 35 35 chr11 106795840 106795883 -15047973 + A-rich Low_complexity Low_complexity 72 114 0 9 1399 1140 269 79 15 chr11 106796082 106796384 -15047472 + ORR1D2 LTR MaLR 1 326 -44 9 1399 3229 43 8 5 chr11 106796384 106796779 -15047077 - MTA_Mm LTR MaLR 0 396 1 9 1399 1140 269 79 15 chr11 106796779 106796819 -15047037 + ORR1D2 LTR MaLR 327 365 -5 9 1399 348 301 92 100 chr11 106797101 106797341 -15046515 + B4 SINE B4 43 280 -12 9 1399 266 200 236 0 chr11 106797455 106797510 -15046346 - ID4_ SINE ID -14 69 2 9 1399 248 294 59 0 chr11 106797511 106797579 -15046277 - MER58A DNA MER1_type -151 73 2 9 1399 1087 93 0 0 chr11 106797743 106797882 -15045974 + B1_Mus1 SINE Alu 1 139 -9 9 1399 207 0 0 0 chr11 106797882 106797905 -15045951 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1399 927 154 14 7 chr11 106797919 106798063 -15045793 + B1_Mur4 SINE Alu 2 146 -4 9 1399 200 93 47 0 chr11 106798064 106798107 -15045749 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 9 1399 575 263 62 39 chr11 106798120 106798298 -15045558 + ID_B1 SINE B4 2 183 -41 9 1399 239 359 61 49 chr11 106798381 106798627 -15045229 - MLT1L LTR MaLR -68 542 294 9 1399 489 290 21 28 chr11 106798648 106798790 -15045066 - ID_B1 SINE B4 -3 221 81 9 1399 454 292 100 38 chr11 106798911 106799121 -15044735 + ID_B1 SINE B4 1 223 -1 9 1399 267 316 16 30 chr11 106799268 106799374 -15044482 - MIRc SINE MIR -108 160 60 9 1399 255 308 33 0 chr11 106799479 106799570 -15044286 - MLT1H LTR MaLR -17 574 481 9 1399 420 277 58 51 chr11 106799598 106799754 -15044102 - MLT1H LTR MaLR -199 350 194 9 1399 735 263 89 27 chr11 106799867 106800125 -15043731 + B4A SINE B4 3 276 -16 9 1399 188 111 28 0 chr11 106800134 106800170 -15043686 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1399 183 0 0 0 chr11 106800591 106800615 -15043241 - L2a LINE L2 -3 3423 3400 9 1399 796 271 17 56 chr11 106800694 106800925 -15042931 + ID_B1 SINE B4 1 222 -2 9 1399 932 51 0 0 chr11 106800930 106800975 -15042881 + B1_Mus1 SINE Alu 2 118 -30 9 1399 310 241 0 71 chr11 106800975 106801047 -15042809 + RLTR25A LTR ERVK 522 588 -515 9 1399 234 0 0 0 chr11 106801047 106801073 -15042783 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1399 310 241 0 71 chr11 106801073 106801085 -15042771 + RLTR25A LTR ERVK 589 600 -503 9 1399 664 258 88 29 chr11 106801216 106801420 -15042436 + ID_B1 SINE B4 3 218 -6 9 1399 801 245 37 16 chr11 106801439 106801615 -15042241 + B3A SINE B2 4 179 -19 9 1399 489 34 0 0 chr11 106801615 106801674 -15042182 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1399 801 245 37 16 chr11 106801674 106801688 -15042168 + B3A SINE B2 180 197 -1 9 1399 461 156 122 0 chr11 106801686 106801776 -15042080 + B1_Mur1 SINE Alu 27 127 -22 9 1399 25 51 0 0 chr11 106801782 106801821 -15042035 + AT_rich Low_complexity Low_complexity 1 39 0 9 1399 501 269 0 0 chr11 106802466 106802570 -15041286 + B3 SINE B2 70 173 -43 9 1399 180 0 0 0 chr11 106802570 106802590 -15041266 + (CATATA)n Simple_repeat Simple_repeat 4 23 0 9 1399 331 96 313 17 chr11 106802676 106802791 -15041065 - B2_Mm2 SINE B2 0 195 47 9 1399 1387 68 11 0 chr11 106802823 106803000 -15040856 - B2_Mm1t SINE B2 -14 179 1 9 1399 620 152 0 0 chr11 106803137 106803236 -15040620 + B1_Mus2 SINE Alu 46 144 -3 9 1399 676 278 122 23 chr11 106803278 106803492 -15040364 + B4A SINE B4 54 288 -4 9 1399 270 0 0 0 chr11 106803527 106803557 -15040299 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1399 241 333 20 10 chr11 106803639 106803739 -15040117 + L3 LINE CR1 3749 3849 -640 9 1399 411 262 19 70 chr11 106803912 106804065 -15039791 + ID_B1 SINE B4 43 179 -45 9 1399 772 212 7 110 chr11 106804101 106804335 -15039521 + B3A SINE B2 1 212 -4 9 1399 1506 45 0 6 chr11 106804345 106804523 -15039333 + B2_Mm2 SINE B2 1 177 -18 9 1399 180 0 0 0 chr11 106804585 106804605 -15039251 + (TAA)n Simple_repeat Simple_repeat 2 21 0 9 1399 688 204 0 62 chr11 106804690 106804836 -15039020 + B1_Mur1 SINE Alu 12 148 -1 9 1399 756 175 206 0 chr11 106804879 106805039 -15038817 + B3 SINE B2 2 194 -22 9 1399 239 208 208 0 chr11 106805039 106805092 -15038764 + B3 SINE B2 131 194 -22 9 1399 264 238 175 0 chr11 106805082 106805145 -15038711 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805135 106805198 -15038658 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805188 106805251 -15038605 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805241 106805304 -15038552 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805294 106805357 -15038499 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805347 106805410 -15038446 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805400 106805463 -15038393 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805453 106805516 -15038340 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805506 106805569 -15038287 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805559 106805622 -15038234 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805612 106805675 -15038181 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805665 106805728 -15038128 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805718 106805781 -15038075 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805771 106805834 -15038022 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805824 106805887 -15037969 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805877 106805940 -15037916 + B3 SINE B2 121 194 -22 9 1399 281 222 175 0 chr11 106805930 106805993 -15037863 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106805983 106806046 -15037810 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806036 106806099 -15037757 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806089 106806152 -15037704 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806142 106806205 -15037651 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806195 106806258 -15037598 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806248 106806311 -15037545 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806301 106806364 -15037492 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806354 106806417 -15037439 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806407 106806470 -15037386 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106806460 106806523 -15037333 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106806513 106806576 -15037280 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806566 106806629 -15037227 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806619 106806682 -15037174 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806672 106806735 -15037121 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806725 106806788 -15037068 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806778 106806841 -15037015 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806831 106806894 -15036962 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806884 106806947 -15036909 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806937 106807000 -15036856 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106806990 106807053 -15036803 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807043 106807106 -15036750 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807096 106807159 -15036697 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807149 106807212 -15036644 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807202 106807265 -15036591 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807255 106807318 -15036538 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807308 106807371 -15036485 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807361 106807424 -15036432 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807414 106807477 -15036379 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807467 106807530 -15036326 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807520 106807583 -15036273 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807573 106807636 -15036220 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807626 106807689 -15036167 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807679 106807742 -15036114 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807732 106807795 -15036061 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807785 106807848 -15036008 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807838 106807901 -15035955 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807891 106807954 -15035902 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807944 106808007 -15035849 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106807997 106808060 -15035796 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808050 106808113 -15035743 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808103 106808166 -15035690 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808156 106808219 -15035637 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808209 106808272 -15035584 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808262 106808325 -15035531 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808315 106808378 -15035478 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808368 106808431 -15035425 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808421 106808484 -15035372 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808474 106808537 -15035319 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808527 106808590 -15035266 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106808580 106808643 -15035213 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106808633 106808696 -15035160 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106808686 106808749 -15035107 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808739 106808802 -15035054 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808792 106808855 -15035001 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808845 106808908 -15034948 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808898 106808961 -15034895 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106808951 106809014 -15034842 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809004 106809067 -15034789 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809057 106809120 -15034736 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809110 106809173 -15034683 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809163 106809226 -15034630 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809216 106809279 -15034577 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809269 106809332 -15034524 + B3 SINE B2 121 194 -22 1 1399 265 246 68 55 chr11 106809322 106809395 -15034461 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809385 106809448 -15034408 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809438 106809501 -15034355 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809491 106809554 -15034302 + B3 SINE B2 121 194 -22 1 1399 273 238 175 0 chr11 106809544 106809607 -15034249 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809597 106809660 -15034196 + B3 SINE B2 121 194 -22 1 1399 265 246 68 55 chr11 106809650 106809723 -15034133 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809713 106809776 -15034080 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809766 106809829 -15034027 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809819 106809882 -15033974 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809872 106809935 -15033921 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809925 106809988 -15033868 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106809978 106810041 -15033815 + B3 SINE B2 121 194 -22 1 1399 318 239 104 0 chr11 106810031 106810098 -15033758 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810088 106810151 -15033705 + B3 SINE B2 121 194 -22 1 1399 273 238 175 0 chr11 106810141 106810204 -15033652 + B3 SINE B2 121 194 -22 1 1399 318 239 104 0 chr11 106810194 106810261 -15033595 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810251 106810314 -15033542 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810304 106810367 -15033489 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810357 106810420 -15033436 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810410 106810473 -15033383 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810463 106810526 -15033330 + B3 SINE B2 121 194 -22 1 1399 318 239 104 0 chr11 106810516 106810583 -15033273 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106810573 106810636 -15033220 + B3 SINE B2 121 194 -22 1 1399 273 238 175 0 chr11 106810626 106810689 -15033167 + B3 SINE B2 121 194 -22 1 1399 318 239 104 0 chr11 106810679 106810746 -15033110 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810736 106810799 -15033057 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810789 106810852 -15033004 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810842 106810905 -15032951 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810895 106810958 -15032898 + B3 SINE B2 121 194 -22 1 1399 281 222 175 0 chr11 106810948 106811011 -15032845 + B3 SINE B2 121 194 -22 1 1399 318 239 104 0 chr11 106811001 106811068 -15032788 + B3 SINE B2 121 194 -22 1 1399 264 238 175 0 chr11 106811058 106811121 -15032735 + B3 SINE B2 121 194 -22 1 1399 273 238 175 0 chr11 106811111 106811174 -15032682 + B3 SINE B2 121 194 -22 1 1399 318 239 104 0 chr11 106811164 106811231 -15032625 + B3 SINE B2 121 194 -22 1 1399 246 254 175 0 chr11 106811221 106811284 -15032572 + B3 SINE B2 121 194 -22 1 1399 365 203 149 0 chr11 106811274 106811348 -15032508 + B3 SINE B2 121 205 -11 1 1399 1082 95 0 33 chr11 106811389 106811541 -15032315 + B1_Mus2 SINE Alu 1 147 0 1 1399 1214 36 0 0 chr11 106811662 106811802 -15032054 - B1_Mus2 SINE Alu -7 140 1 1 1399 207 0 0 0 chr11 106812509 106812532 -15031324 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1 1399 25 0 0 0 chr11 106812588 106812613 -15031243 + AT_rich Low_complexity Low_complexity 1 25 0 1 1399 372 330 10 0 chr11 106812638 106812738 -15031118 - PB1 SINE Alu -3 124 24 1 1399 344 54 39 39 chr11 106812789 106812866 -15030990 + (TTTTTG)n Simple_repeat Simple_repeat 6 82 0 1 1399 1006 25 0 0 chr11 106812866 106812985 -15030871 - B1_Mm SINE Alu 0 147 29 1 1399 216 288 15 0 chr11 106812986 106813052 -15030804 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 1 1399 1445 76 11 0 chr11 106813106 106813291 -15030565 - B2_Mm1t SINE B2 -6 187 1 1 1399 22 0 0 0 chr11 106813370 106813392 -15030464 + AT_rich Low_complexity Low_complexity 1 22 0 1 1399 535 243 99 26 chr11 106813396 106813548 -15030308 - RSINE1 SINE B4 0 165 3 1 1399 519 259 31 0 chr11 106814207 106814336 -15029520 - B1F2 SINE Alu -5 144 12 1 1399 316 303 93 28 chr11 106814467 106814681 -15029175 - L1M5 LINE L1 -802 5344 5117 1 1399 579 262 48 0 chr11 106815129 106815255 -15028601 + RSINE1 SINE B4 1 132 -33 1 1399 968 157 91 30 chr11 106815318 106815515 -15028341 + B3 SINE B2 2 210 -6 1 1399 1019 141 0 6 chr11 106816455 106816557 -15027299 + (GAA)n Simple_repeat Simple_repeat 1 101 0 1 1399 1403 34 11 0 chr11 106816557 106816733 -15027123 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1399 1019 141 0 6 chr11 106816733 106816809 -15027047 + (GAA)n Simple_repeat Simple_repeat 3 78 0 1 1399 910 248 40 0 chr11 106817161 106817359 -15026497 - ID_B1 SINE B4 -18 206 1 1 1399 343 250 12 0 chr11 106817418 106817498 -15026358 - ID4 SINE ID -1 82 2 1 1399 25 0 0 0 chr11 106817500 106817525 -15026331 + AT_rich Low_complexity Low_complexity 1 25 0 1 1399 630 262 64 0 chr11 106817576 106817717 -15026139 - RSINE1 SINE B4 -13 152 3 1 1399 435 255 96 0 chr11 106817726 106817820 -15026036 - B1F SINE Alu -14 135 33 1 1399 1030 283 148 55 chr11 106817820 106818604 -15025252 + L2a LINE L2 2565 3426 0 1 1399 1030 245 92 25 chr11 106819376 106819648 -15024208 - MTE2a LTR MaLR -4 370 87 1 1399 529 216 112 0 chr11 106819648 106819773 -15024083 + B3 SINE B2 1 139 -77 1 1399 1022 128 198 11 chr11 106820220 106820402 -15023454 + B3 SINE B2 1 216 0 1 1399 1005 201 23 16 chr11 106820707 106820923 -15022933 + ID_B1 SINE B4 15 251 -41 1 1399 544 230 79 0 chr11 106821669 106821834 -15022022 + B3A SINE B2 17 194 -4 1 1399 835 240 82 15 chr11 106821840 106822035 -15021821 - B3 SINE B2 0 216 9 1 1399 256 182 239 15 chr11 106822075 106822142 -15021714 + ID4 SINE ID 1 82 -1 1 1399 359 307 104 22 chr11 106822142 106822366 -15021490 + L1MC3 LINE L1 7015 7258 -527 1 1399 505 202 0 41 chr11 106822373 106822471 -15021385 + RSINE1 SINE B4 4 97 -68 1 1399 720 64 0 0 chr11 106822483 106822577 -15021279 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1399 204 217 87 115 chr11 106822627 106822731 -15021125 + MIRc SINE MIR 44 144 -124 1 1400 1244 89 83 6 chr11 106824021 106824183 -15019673 + B2_Mm2 SINE B2 1 177 -18 1 1400 207 0 0 0 chr11 106824183 106824206 -15019650 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1400 1244 89 83 6 chr11 106824206 106824224 -15019632 + B2_Mm2 SINE B2 178 195 0 1 1400 330 115 0 0 chr11 106824406 106824458 -15019398 - B3 SINE B2 -2 214 163 1 1400 1223 41 7 0 chr11 106824491 106824636 -15019220 + B1_Mus2 SINE Alu 2 147 0 1 1400 390 37 74 0 chr11 106824636 106824717 -15019139 + (CAAAAA)n Simple_repeat Simple_repeat 6 92 0 1 1400 638 113 0 207 chr11 106824717 106824778 -15019078 - B1_Mur4 SINE Alu -12 138 87 1 1400 1369 60 60 0 chr11 106824778 106824961 -15018895 - B2_Mm2 SINE B2 -1 194 1 1 1400 638 113 0 207 chr11 106824961 106825044 -15018812 - B1_Mur4 SINE Alu -64 86 24 1 1400 813 193 5 100 chr11 106825018 106825187 -15018669 + B3 SINE B2 38 189 -27 1 1400 1559 33 5 21 chr11 106825187 106825375 -15018481 + B2_Mm1t SINE B2 1 185 -8 1 1400 813 193 5 100 chr11 106825375 106825395 -15018461 + B3 SINE B2 190 209 -7 1 1400 749 211 26 38 chr11 106825402 106825598 -15018258 + B3 SINE B2 6 195 0 1 1400 941 136 203 6 chr11 106825622 106825799 -15018057 + B3 SINE B2 5 216 0 1 1400 645 197 68 0 chr11 106825848 106825965 -15017891 + B1_Mus1 SINE Alu 1 125 -23 1 1400 619 244 8 0 chr11 106826572 106826691 -15017165 + ID_B1 SINE B4 84 203 -21 1 1400 889 90 231 0 chr11 106826691 106826721 -15017135 - B2_Mm2 SINE B2 -2 193 147 1 1400 357 82 0 0 chr11 106826721 106826770 -15017086 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1400 889 90 231 0 chr11 106826770 106826895 -15016961 - B2_Mm2 SINE B2 -49 146 3 1 1400 676 139 0 0 chr11 106826896 106826997 -15016859 + B1_Mus2 SINE Alu 47 147 0 1 1400 294 292 0 11 chr11 106826997 106827087 -15016769 + GA-rich Low_complexity Low_complexity 4 92 0 1 1400 224 200 0 0 chr11 106827299 106827344 -15016512 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1400 702 262 71 0 chr11 106827345 106827513 -15016343 - B3A SINE B2 -18 180 1 1 1400 918 209 0 0 chr11 106827894 106828042 -15015814 + B1_Mur2 SINE Alu 2 149 0 1 1400 396 0 0 0 chr11 106828258 106828302 -15015554 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1400 21 0 0 0 chr11 106828356 106828377 -15015479 + AT_rich Low_complexity Low_complexity 1 21 0 1 1400 687 222 29 0 chr11 106828710 106828898 -15014958 + B3 SINE B2 1 198 0 1 1400 234 0 0 0 chr11 106829456 106829482 -15014374 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1400 229 229 21 0 chr11 106829538 106829586 -15014270 - ID_B1 SINE B4 -7 217 169 1 1400 701 120 0 29 chr11 106829655 106829792 -15014064 + (TTC)n Simple_repeat Simple_repeat 3 135 0 1 1400 883 113 35 21 chr11 106829802 106829947 -15013909 - B1_Mur4 SINE Alu 0 150 4 1 1400 332 304 147 12 chr11 106829959 106830129 -15013727 - MIRc SINE MIR -55 213 21 1 1400 441 254 134 8 chr11 106830335 106830454 -15013402 + ID_B1 SINE B4 85 218 -6 1 1400 329 166 0 0 chr11 106830457 106830514 -15013342 + B1F1 SINE Alu 84 140 -9 1 1400 261 0 0 0 chr11 106830514 106830543 -15013313 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1400 501 230 195 24 chr11 106830570 106830739 -15013117 + B3A SINE B2 1 198 0 1 1400 301 299 13 0 chr11 106830753 106830830 -15013026 + ID4 SINE ID 5 82 -1 1 1400 1448 68 0 10 chr11 106830867 106831059 -15012797 - B2_Mm2 SINE B2 -4 191 2 1 1400 527 283 95 91 chr11 106831316 106831612 -15012244 - MER102a DNA MER1_type -3 327 31 1 1400 1060 77 0 20 chr11 106832085 106832231 -15011625 + B1_Mur4 SINE Alu 8 150 0 1 1400 400 204 86 0 chr11 106832678 106832771 -15011085 + ID_B1 SINE B4 96 196 -28 1 1400 219 139 0 0 chr11 106832771 106832807 -15011049 + (AGGGGG)n Simple_repeat Simple_repeat 6 41 0 1 1400 248 231 0 0 chr11 106832809 106832861 -15010995 + L1M1 LINE L1 5851 5902 -398 1 1400 832 169 51 7 chr11 106833201 106833377 -15010479 + ORR1B1 LTR MaLR 6 225 -169 1 1400 243 125 0 0 chr11 106834432 106834472 -15009384 + (GGA)n Simple_repeat Simple_repeat 3 42 0 1 1400 195 42 0 0 chr11 106835197 106835221 -15008635 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1400 209 87 0 80 chr11 106835553 106835577 -15008279 + A-rich Low_complexity Low_complexity 1 23 0 1 1400 1186 82 0 0 chr11 106835577 106835723 -15008133 + B1_Mus1 SINE Alu 2 147 -1 1 1400 209 87 0 80 chr11 106835723 106835748 -15008108 + A-rich Low_complexity Low_complexity 24 46 0 1 1400 582 139 156 57 chr11 106835753 106835859 -15007997 + ORR1B1 LTR MaLR 232 349 -45 1 1400 755 111 143 0 chr11 106835859 106835985 -15007871 + B2_Mm2 SINE B2 2 145 -50 1 1400 874 170 0 13 chr11 106836083 106836232 -15007624 - B1_Mur4 SINE Alu -3 147 1 1 1400 1048 189 99 0 chr11 106836293 106836484 -15007372 - B3 SINE B2 0 216 7 1 1400 490 277 46 0 chr11 106836484 106836614 -15007242 - B1F2 SINE Alu -13 136 1 1 1400 347 200 53 43 chr11 106836636 106836730 -15007126 - B1F1 SINE Alu -17 132 38 1 1400 842 277 60 25 chr11 106836754 106837072 -15006784 + L1MC4 LINE L1 6688 7016 -1026 1 1400 243 0 0 0 chr11 106838527 106838554 -15005302 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1400 1563 43 16 0 chr11 106838555 106838740 -15005116 - B2_Mm1a SINE B2 -5 188 1 1 1400 279 79 0 0 chr11 106838900 106838938 -15004918 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1400 265 337 65 84 chr11 106838947 106839054 -15004802 - B3 SINE B2 -65 151 47 1 1400 207 133 0 0 chr11 106839054 106839099 -15004757 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1400 1662 37 0 0 chr11 106839100 106839290 -15004566 - B2_Mm1a SINE B2 -2 191 2 1 1400 1205 42 7 0 chr11 106839296 106839440 -15004416 - B1_Mus2 SINE Alu -1 146 2 1 1400 421 59 132 0 chr11 106839487 106839555 -15004301 - B1_Mur3 SINE Alu 0 149 73 1 1400 445 257 2 1 chr11 106839570 106839666 -15004190 - B4A SINE B4 -195 97 1 1 1400 519 197 143 83 chr11 106840223 106840356 -15003500 + B1_Mur2 SINE Alu 1 141 -8 1 1400 804 249 6 12 chr11 106840371 106840542 -15003314 + B3 SINE B2 9 178 -38 1 1400 576 182 10 0 chr11 106840558 106840657 -15003199 - PB1D9 SINE Alu -4 116 17 1 1400 192 152 0 0 chr11 106840665 106840698 -15003158 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1400 384 252 185 0 chr11 106840922 106841073 -15002783 + B3A SINE B2 4 182 -16 1 1400 443 226 72 99 chr11 106841148 106841258 -15002598 + B3 SINE B2 68 182 -34 1 1400 297 128 0 0 chr11 106841258 106841305 -15002551 + (CATA)n Simple_repeat Simple_repeat 4 50 0 1 1400 443 226 72 99 chr11 106841305 106841346 -15002510 + B3 SINE B2 183 215 -1 1 1400 442 227 41 0 chr11 106841359 106841472 -15002384 + B1F2 SINE Alu 2 123 -26 1 1400 321 265 106 126 chr11 106841472 106841566 -15002290 + B4 SINE B4 87 289 -3 1 1400 385 330 0 0 chr11 106841638 106841726 -15002130 + ID_B1 SINE B4 104 191 -33 1 1400 254 323 60 30 chr11 106841798 106841966 -15001890 - MIR SINE MIR -94 168 1 1 1400 983 84 0 8 chr11 106842185 106842317 -15001539 - B1_Mus1 SINE Alu 0 148 18 1 1400 345 216 34 128 chr11 106842220 106842337 -15001519 - MT2B LTR ERVL -337 264 159 1 1400 397 283 9 19 chr11 106842348 106842456 -15001400 + PB1D7 SINE Alu 3 109 -11 1 1400 352 329 31 0 chr11 106842462 106842898 -15000958 + (CAA)n Simple_repeat Simple_repeat 1 449 0 1 1400 361 254 205 68 chr11 106842898 106843088 -15000768 - MER20 DNA MER1_type 0 219 4 1 1400 189 74 0 0 chr11 106843116 106843143 -15000713 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1400 745 145 98 8 chr11 106843501 106843633 -15000223 + B1_Mur4 SINE Alu 6 149 -1 1 1400 196 138 69 0 chr11 106843712 106843770 -15000086 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 1 1400 279 0 0 0 chr11 106844037 106844068 -14999788 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1400 336 318 22 33 chr11 106844093 106844155 -14999701 - ID_B1 SINE B4 -14 210 150 1 1400 1441 44 72 0 chr11 106844155 106844315 -14999541 + B2_Mm1a SINE B2 1 160 -33 1 1400 264 59 0 0 chr11 106844315 106844349 -14999507 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1400 1441 44 72 0 chr11 106844349 106844368 -14999488 + B2_Mm1a SINE B2 161 192 -1 1 1400 336 318 22 33 chr11 106844368 106844396 -14999460 - ID_B1 SINE B4 -75 149 121 1 1400 362 125 203 0 chr11 106844401 106844465 -14999391 + B1_Mur4 SINE Alu 43 119 -31 1 1400 929 174 39 11 chr11 106844913 106845093 -14998763 - B2_Mm2 SINE B2 -9 186 2 1 1400 901 152 0 0 chr11 106846082 106846220 -14997636 - B1_Mur4 SINE Alu -12 138 1 1 1400 425 250 23 116 chr11 106846220 106846254 -14997602 - B4A SINE B4 -77 215 60 1 1400 237 242 79 16 chr11 106846254 106846317 -14997539 + MT2B2 LTR ERVL 173 239 -345 1 1400 225 262 162 0 chr11 106846257 106846337 -14997519 + B1_Mm SINE Alu 12 104 -43 1 1400 292 194 100 43 chr11 106846447 106846517 -14997339 - B1_Mus1 SINE Alu -54 95 22 1 1400 528 199 92 169 chr11 106846559 106846655 -14997201 + RMER1C Other Other 1039 1129 -213 1 1400 1057 88 0 26 chr11 106846655 106846806 -14997050 - B1_Mus2 SINE Alu 0 147 1 1 1400 528 199 92 169 chr11 106846806 106846966 -14996890 + RMER1C Other Other 1130 1283 -59 1 1400 1620 38 0 0 chr11 106846966 106847152 -14996704 + B2_Mm1a SINE B2 2 187 -6 1 1400 528 199 92 169 chr11 106847152 106847220 -14996636 + RMER1C Other Other 1284 1339 -3 1 1400 519 261 48 105 chr11 106847222 106847432 -14996424 - B3A SINE B2 0 198 1 1 1400 180 0 0 0 chr11 106847751 106847771 -14996085 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1400 1186 48 7 20 chr11 106847773 106847922 -14995934 + B1_Mm SINE Alu 1 147 0 1 1400 24 0 0 0 chr11 106848300 106848324 -14995532 + AT_rich Low_complexity Low_complexity 1 24 0 1 1400 254 262 49 12 chr11 106848358 106848439 -14995417 - ID_B1 SINE B4 -14 210 127 1 1400 324 261 129 74 chr11 106848505 106848735 -14995121 + MTD LTR MaLR 102 356 -14 1 1400 282 250 175 0 chr11 106848749 106848829 -14995027 - ID_B1 SINE B4 -128 96 3 1 1400 372 214 81 23 chr11 106848836 106848922 -14994934 - PB1D9 SINE Alu -1 119 29 1 1400 475 174 75 21 chr11 106848997 106849091 -14994765 + B3 SINE B2 9 107 -109 1 1400 648 200 47 23 chr11 106849152 106849280 -14994576 + B1_Mur2 SINE Alu 15 145 -4 1 1400 664 222 122 29 chr11 106849294 106849490 -14994366 + B3 SINE B2 2 192 -24 1 1400 771 69 0 0 chr11 106849766 106849867 -14993989 - B1_Mus2 SINE Alu -6 141 41 1 1400 795 134 55 0 chr11 106850910 106851037 -14992819 - B1_Mur2 SINE Alu -7 142 9 1 1400 22 35 0 0 chr11 106851043 106851072 -14992784 + AT_rich Low_complexity Low_complexity 1 29 0 1 1400 512 206 39 0 chr11 106851114 106851216 -14992640 + B3 SINE B2 7 112 -104 1 1400 367 211 13 0 chr11 106851269 106851345 -14992511 - PB1D9 SINE Alu -15 105 29 1 1400 272 239 45 0 chr11 106851814 106851881 -14991975 - B1_Mus2 SINE Alu -75 72 3 1 1400 272 189 227 13 chr11 106852879 106852954 -14990902 + B1_Mur2 SINE Alu 59 149 0 1 1400 273 347 41 21 chr11 106853522 106853619 -14990237 + PB1D7 SINE Alu 12 110 -10 1 1400 416 193 35 35 chr11 106853626 106853712 -14990144 + RSINE1 SINE B4 2 87 -78 1 1400 216 0 0 0 chr11 106853732 106853756 -14990100 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1400 288 0 0 0 chr11 106853756 106853787 -14990069 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1400 360 0 0 0 chr11 106853828 106853868 -14989988 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 1 1400 21 57 0 0 chr11 106854020 106854055 -14989801 + AT_rich Low_complexity Low_complexity 1 35 0 1 1400 751 280 199 25 chr11 106854066 106854392 -14989464 + MTD LTR MaLR 1 383 -36 1 1400 713 164 41 76 chr11 106854696 106854841 -14989015 - B1_Mur2 SINE Alu -1 148 9 1 1400 389 267 50 133 chr11 106854703 106854876 -14988980 - B4 SINE B4 -68 224 64 1 1400 1556 238 101 118 chr11 106854921 106855063 -14988793 + Lx8 LINE L1 6321 6436 -1037 1 1400 1710 26 0 0 chr11 106855063 106855255 -14988601 + B2_Mm1a SINE B2 2 193 0 1 1400 1556 238 101 118 chr11 106855255 106855827 -14988029 + Lx8 LINE L1 6437 7023 -450 1 1400 412 218 105 78 chr11 106855895 106856207 -14987649 + MTC LTR MaLR 115 421 0 1 1400 266 320 149 35 chr11 106856215 106856416 -14987440 + Lx8 LINE L1 7121 7344 -129 1 1400 402 219 61 0 chr11 106856882 106856964 -14986892 + URR1B DNA MER1_type 1 87 -138 1 1400 1188 48 7 0 chr11 106856982 106857127 -14986729 - B1_Mus1 SINE Alu -1 147 2 1 1400 411 167 301 55 chr11 106857164 106857310 -14986546 - B2_Mm2 SINE B2 -13 182 1 1 1400 714 156 31 0 chr11 106857311 106857439 -14986417 + URR1B DNA MER1_type 93 224 -1 1 1400 274 315 65 0 chr11 106857479 106857571 -14986285 + B1F1 SINE Alu 46 143 -6 1 1400 921 177 0 0 chr11 106858045 106858192 -14985664 - B1_Mus2 SINE Alu 0 147 1 1 1400 332 263 66 0 chr11 106858227 106858303 -14985553 + RSINE1 SINE B4 11 91 -74 1 1400 234 316 0 73 chr11 106858404 106858486 -14985370 + ID4_ SINE ID 5 80 -3 1 1400 842 192 14 14 chr11 106858722 106858870 -14984986 + B1_Mur3 SINE Alu 1 148 -1 1 1400 1106 49 0 34 chr11 106858940 106859087 -14984769 + B1_Mus1 SINE Alu 7 148 0 1 1400 205 51 51 0 chr11 106859087 106859126 -14984730 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 1 1400 668 138 97 30 chr11 106859142 106859276 -14984580 + B1_Mur4 SINE Alu 1 143 -7 1 1400 695 239 123 5 chr11 106859408 106859433 -14984423 - MER33 DNA MER1_type -43 281 257 1 1400 998 58 72 0 chr11 106859433 106859571 -14984285 + B1_Mus1 SINE Alu 1 148 0 1 1400 695 239 123 5 chr11 106859571 106859764 -14984092 - MER33 DNA MER1_type -68 256 38 1 1400 679 61 278 0 chr11 106859865 106859980 -14983876 - B1_Mus1 SINE Alu 0 148 2 1 1400 409 186 60 30 chr11 106861175 106861266 -14982590 + PB1D9 SINE Alu 13 106 -14 1 1400 219 69 0 0 chr11 106861266 106861295 -14982561 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 1 1400 384 206 57 85 chr11 106861512 106861618 -14982238 - PB1D10 SINE Alu -10 107 5 1 1400 261 229 43 98 chr11 106861542 106861634 -14982222 - MT2B2 LTR ERVL -343 241 155 1 1400 414 227 61 92 chr11 106861634 106861662 -14982194 + MT2B LTR ERVL 131 154 -447 1 1400 826 110 88 0 chr11 106861662 106861798 -14982058 + B1_Mus1 SINE Alu 1 148 0 1 1400 1137 60 6 45 chr11 106861844 106862000 -14981856 + B1_Mur4 SINE Alu 1 150 0 1 1400 23 33 0 0 chr11 106862042 106862072 -14981784 + AT_rich Low_complexity Low_complexity 1 30 0 1 1400 270 0 0 0 chr11 106862087 106862117 -14981739 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1400 271 137 297 14 chr11 106862136 106862210 -14981646 - B1_Mur4 SINE Alu -55 95 1 1 1400 241 191 0 0 chr11 106862255 106862297 -14981559 - L1MC4 LINE L1 -68 7974 7933 1 1400 772 154 8 13 chr11 106862356 106862501 -14981355 - B1_Mus1 SINE Alu -1 148 10 1 1400 945 59 0 0 chr11 106862566 106862684 -14981172 - B2_Mm2 SINE B2 -77 118 1 1 1400 336 278 7 125 chr11 106862673 106862701 -14981155 + ID_B1 SINE B4 65 162 -62 1 1400 635 216 17 0 chr11 106862701 106862817 -14981039 + B1_Mur3 SINE Alu 1 118 -31 1 1400 432 0 0 0 chr11 106862827 106862875 -14980981 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1400 284 208 0 0 chr11 106863290 106863338 -14980518 + MLT1K LTR MaLR 189 236 -359 1 1400 209 264 78 33 chr11 106863616 106863706 -14980150 - MIRc SINE MIR -122 146 53 1 1400 363 277 40 0 chr11 106863765 106863866 -14979990 + PB1D9 SINE Alu 1 105 -15 1 1400 519 261 48 101 chr11 106863870 106864079 -14979777 + B3A SINE B2 1 198 0 1 1400 647 212 200 55 chr11 106864094 106864266 -14979590 - RMER1C Other Other -12 1330 1111 1 1400 1109 84 7 7 chr11 106864266 106864402 -14979454 + B1_Mus2 SINE Alu 1 137 -10 1 1400 212 0 36 0 chr11 106864402 106864430 -14979426 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1400 647 212 200 55 chr11 106864437 106864519 -14979337 - RMER1C Other Other -232 1110 1039 1 1400 207 0 0 0 chr11 106864701 106864724 -14979132 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1400 1133 62 14 7 chr11 106864724 106864862 -14978994 - B1_Mus1 SINE Alu -8 140 2 1 1400 698 148 163 8 chr11 106866101 106866230 -14977626 - B1_Mur3 SINE Alu 0 149 1 1 1400 691 213 49 7 chr11 106866237 106866379 -14977477 - RMER1C Other Other -299 1043 896 1 1400 1232 47 0 0 chr11 106866379 106866527 -14977329 + B2_Mm1a SINE B2 2 149 -44 1 1400 365 103 0 14 chr11 106866527 106866596 -14977260 + (CATA)n Simple_repeat Simple_repeat 3 70 0 1 1400 325 248 35 60 chr11 106866600 106866716 -14977140 - RMER1C Other Other -434 908 796 1 1400 340 307 22 73 chr11 106866728 106866865 -14976991 + B3A SINE B2 69 198 0 1 1400 262 277 186 10 chr11 106866881 106866894 -14976962 + B4 SINE B4 60 90 -202 1 1400 506 213 6 8 chr11 106866894 106867001 -14976855 + B1_Mus1 SINE Alu 2 110 -37 1 1400 376 191 118 0 chr11 106867001 106867123 -14976733 + B3 SINE B2 2 205 -11 1 1400 312 125 359 0 chr11 106867143 106867207 -14976649 + B1_Mur1 SINE Alu 21 136 -13 1 1400 227 224 35 0 chr11 106867234 106867292 -14976564 + BC1_Mm scRNA scRNA 25 84 -68 1 1400 699 0 0 0 chr11 106867339 106867423 -14976433 + L1Md_T LINE L1 6499 6582 0 1 1400 958 32 73 0 chr11 106867444 106867567 -14976289 + B2_Mm2 SINE B2 3 134 -61 1 1400 1309 107 21 0 chr11 106867734 106867921 -14975935 + B2_Mm2 SINE B2 1 191 -4 1 1400 273 29 0 0 chr11 106868051 106868085 -14975771 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1400 1226 122 21 0 chr11 106868606 106868794 -14975062 + B2_Mm2 SINE B2 2 193 -2 1 1400 1148 88 0 7 chr11 106868798 106868946 -14974910 + B1_Mus1 SINE Alu 1 147 -1 1 1400 921 110 81 0 chr11 106868994 106869130 -14974726 + B1_Mur3 SINE Alu 2 148 -1 1 1400 192 77 0 0 chr11 106869131 106869157 -14974699 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1400 496 307 14 7 chr11 106869798 106869939 -14973917 - MLT1A LTR MaLR -232 142 1 1 1400 271 256 50 25 chr11 106869998 106870078 -14973778 - PB1D10 SINE Alu -35 82 1 1 1400 234 0 0 0 chr11 106870098 106870124 -14973732 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 1 1400 539 309 31 22 chr11 106870959 106871181 -14972675 - B4A SINE B4 -59 233 10 1 1400 549 250 106 0 chr11 106871189 106871369 -14972487 + L1MC2 LINE L1 6021 6219 -125 1 1400 351 0 0 0 chr11 106871402 106871441 -14972415 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1400 1255 27 0 0 chr11 106871441 106871587 -14972269 - B1_Mm SINE Alu 0 147 2 1 1400 872 223 61 41 chr11 106871612 106871808 -14972048 - B3 SINE B2 -6 210 11 1 1400 318 292 140 9 chr11 106871770 106871884 -14971972 - Charlie1 DNA MER1_type -1015 1766 1638 1 1400 3152 116 64 19 chr11 106872003 106872186 -14971670 + RMER17C-int LTR ERVK 2699 2874 -364 1 1400 294 29 0 0 chr11 106872186 106872221 -14971635 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1400 3152 116 64 19 chr11 106872221 106872554 -14971302 + RMER17C-int LTR ERVK 2875 3237 -1 1 1400 620 118 27 9 chr11 106872555 106872666 -14971190 + RMER17C LTR ERVK 2 114 -296 1 1400 404 45 14 43 chr11 106872648 106872717 -14971139 + RMER17C LTR ERVK 281 347 -63 1 1400 395 218 198 0 chr11 106873100 106873201 -14970655 - MTE2a LTR MaLR -1 378 258 1 1400 297 221 92 46 chr11 106873291 106873400 -14970456 - MTE2a LTR MaLR -265 114 1 1 1400 212 0 36 0 chr11 106873441 106873469 -14970387 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1400 469 118 0 0 chr11 106874181 106874249 -14969607 + tRNA-Arg-AGG tRNA tRNA 3 70 -6 1 1400 1062 70 7 20 chr11 106874532 106874678 -14969178 - B1_Mus1 SINE Alu 0 148 5 1 1400 252 0 0 0 chr11 106874690 106874718 -14969138 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1400 242 283 165 28 chr11 106874759 106874868 -14968988 + MT2B LTR ERVL 134 257 -344 1 1400 362 130 165 25 chr11 106874823 106874902 -14968954 + B1_Mur3 SINE Alu 59 148 -1 1 1400 229 206 26 117 chr11 106874903 106874980 -14968876 - B2_Mm2 SINE B2 -122 73 4 1 1400 1163 77 0 0 chr11 106875006 106875149 -14968707 - B1_Mm SINE Alu 0 147 5 1 1400 275 238 154 29 chr11 106875239 106875343 -14968513 - PB1D10 SINE Alu 0 117 1 1 1400 216 0 0 0 chr11 106875463 106875487 -14968369 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1400 1053 73 0 0 chr11 106875487 106875623 -14968233 - B1_Mus1 SINE Alu 0 148 13 1 1400 410 272 83 29 chr11 106875604 106875772 -14968084 + B3A SINE B2 23 188 -5 1 1400 670 212 43 31 chr11 106875623 106875648 -14968208 - ID_B1 SINE B4 0 224 62 1 1400 741 208 7 20 chr11 106876587 106876734 -14967122 + B1_Mur1 SINE Alu 5 149 0 1 1400 209 57 0 28 chr11 106876828 106876864 -14966992 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1400 977 67 74 7 chr11 106876864 106876991 -14966865 - B1_Mus2 SINE Alu -9 138 2 1 1400 491 204 19 28 chr11 106876992 106877098 -14966758 + ID_B1 SINE B4 91 195 -29 1 1400 1679 36 0 0 chr11 106877104 106877296 -14966560 - B2_Mm1a SINE B2 0 193 2 1 1400 646 34 22 0 chr11 106877322 106877411 -14966445 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 1400 370 187 88 163 chr11 106877415 106877562 -14966294 - B1_Mur4 SINE Alu -14 136 1 1 1400 222 91 0 0 chr11 106877640 106877673 -14966183 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1400 259 275 49 108 chr11 106877689 106877791 -14966065 - ID_B1 SINE B4 -54 170 75 1 1400 939 225 14 95 chr11 106877791 106878012 -14965844 - B3 SINE B2 -2 214 12 1 1400 936 51 0 0 chr11 106878027 106878145 -14965711 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 1 1400 1889 161 100 17 chr11 106878159 106878570 -14965286 - RMER6A LTR ERVK -1 755 311 1 1400 357 124 316 17 chr11 106878565 106878679 -14965177 - B2_Mm2 SINE B2 -1 194 47 1 1400 231 102 71 157 chr11 106878730 106878800 -14965056 - B2_Mm1t SINE B2 -14 179 116 1 1400 282 215 48 97 chr11 106878773 106878876 -14964980 + RMER6C LTR ERVK 273 370 -320 1 1400 1002 88 7 13 chr11 106878842 106878991 -14964865 - B2_Mm1t SINE B2 -43 150 3 1 1400 842 238 12 42 chr11 106879051 106879217 -14964639 - RSINE1 SINE B4 -2 163 2 1 1400 426 77 12 71 chr11 106879615 106879699 -14964157 - L1Md_F3 LINE L1 -3 6581 6503 1 1400 732 194 157 26 chr11 106879758 106879949 -14963907 - B3 SINE B2 0 216 1 1 1400 254 222 0 65 chr11 106880078 106880155 -14963701 + L1M7 LINE L1 219 290 -5928 1 1400 1538 58 5 0 chr11 106880322 106880513 -14963343 + B2_Mm1t SINE B2 2 193 0 1 1400 245 201 46 49 chr11 106880950 106881015 -14962841 + B1F1 SINE Alu 1 64 -63 1 1400 338 303 16 54 chr11 106881074 106881203 -14962653 - L1ME4a LINE L1 -65 6059 5936 1 1400 1704 21 0 0 chr11 106881265 106881456 -14962400 + B2_Mm1a SINE B2 2 192 -1 1 1400 930 52 0 0 chr11 106881468 106881584 -14962272 + B1_Mm SINE Alu 32 147 0 1 1400 228 215 84 48 chr11 106881649 106881732 -14962124 - BC1_Mm scRNA scRNA -60 92 7 1 1400 1304 102 32 5 chr11 106881737 106881924 -14961932 - B2_Mm1t SINE B2 -1 192 1 1 1400 300 319 83 41 chr11 106882003 106882124 -14961732 - RSINE1 SINE B4 -8 157 32 1 1400 793 157 57 0 chr11 106882387 106882527 -14961329 + B1_Mur4 SINE Alu 3 150 0 1 1400 404 208 16 23 chr11 106882532 106882660 -14961196 + GA-rich Low_complexity Low_complexity 2 128 0 1 1400 1230 48 0 0 chr11 106882806 106882953 -14960903 + B1_Mus1 SINE Alu 2 148 0 1 1400 336 48 0 0 chr11 106882967 106883009 -14960847 + (GGAGA)n Simple_repeat Simple_repeat 2 43 0 1 1400 186 43 0 0 chr11 106883009 106883031 -14960825 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 1 1400 649 190 0 25 chr11 106883199 106883318 -14960538 - PB1D7 SINE Alu -1 119 4 1 1400 264 299 22 22 chr11 106883397 106883486 -14960370 - MER21B LTR ERV1 -553 310 222 1 1400 433 252 43 14 chr11 106883871 106884012 -14959844 - B1F SINE Alu 0 149 5 1 1400 671 274 35 6 chr11 106884085 106884254 -14959602 + B3 SINE B2 1 174 -42 1 1400 1175 205 13 4 chr11 106884260 106884485 -14959371 - MTD LTR MaLR -192 227 1 1 1400 227 95 48 0 chr11 106884896 106884938 -14958918 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1 1400 1626 32 11 0 chr11 106884939 106885129 -14958727 - B2_Mm1a SINE B2 0 193 2 1 1400 1886 108 44 56 chr11 106885134 106885476 -14958380 - Lx LINE L1 0 6654 6317 1 1400 307 267 130 6 chr11 106885505 106885682 -14958174 - B3 SINE B2 -16 200 2 1 1400 189 0 0 0 chr11 106885686 106885707 -14958149 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1400 617 300 44 15 chr11 106885765 106885968 -14957888 - ID_B1 SINE B4 -8 216 8 1 1400 297 0 0 0 chr11 106887695 106887728 -14956128 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1400 270 0 0 0 chr11 106887728 106887757 -14956099 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1400 771 11 0 0 chr11 106888687 106888775 -14955081 + (TC)n Simple_repeat Simple_repeat 2 89 0 1 1400 180 0 0 0 chr11 106888775 106888794 -14955062 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1400 275 197 135 7 chr11 106888938 106889026 -14954830 - PB1D7 SINE Alu -2 118 20 1 1400 21 36 0 0 chr11 106889407 106889435 -14954421 + GC_rich Low_complexity Low_complexity 1 28 0 1 1400 339 245 81 9 chr11 106890054 106890165 -14953691 - PB1D7 SINE Alu -1 119 1 1 1400 255 265 176 56 chr11 106890257 106890365 -14953491 + ID_B1 SINE B4 76 196 -28 1 1400 1181 41 14 20 chr11 106890450 106890598 -14953258 - B1_Mus1 SINE Alu 0 148 2 1 1400 182 105 0 26 chr11 106891766 106891805 -14952051 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1400 393 196 0 52 chr11 106891989 106892083 -14951773 + PB1D9 SINE Alu 6 93 -55 1 1400 556 179 11 0 chr11 106892253 106892348 -14951508 + PB1D9 SINE Alu 1 96 -24 1 1400 322 262 44 88 chr11 106892255 106892368 -14951488 + MT2B LTR ERVL 167 274 -327 1 1400 507 130 30 0 chr11 106892710 106892810 -14951046 + CT-rich Low_complexity Low_complexity 2 104 0 1 1400 230 299 148 40 chr11 106892819 106892920 -14950936 + PB1D7 SINE Alu 2 113 -7 1 1400 253 304 45 45 chr11 106892940 106893119 -14950737 + B3A SINE B2 2 180 -18 1 1400 952 207 37 42 chr11 106894056 106894273 -14949583 + B3 SINE B2 1 216 0 1 1400 282 95 0 0 chr11 106896817 106896859 -14946997 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1400 1170 68 7 0 chr11 106898041 106898187 -14945669 + B1_Mus1 SINE Alu 1 147 -1 1 1400 820 62 142 0 chr11 106898559 106898672 -14945184 - B1_Mus1 SINE Alu -17 131 3 1 1400 1110 83 0 0 chr11 106899177 106899321 -14944535 - B1_Mus2 SINE Alu -1 146 3 1 1400 264 291 32 136 chr11 106899732 106899887 -14943969 + RMER19B LTR ERVK 396 534 -368 1 1400 432 0 0 0 chr11 106900582 106900630 -14943226 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1400 387 0 0 0 chr11 106901137 106901180 -14942676 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1400 500 184 67 19 chr11 106901273 106901378 -14942478 - B1_Mur1 SINE Alu -1 148 39 1 1400 781 181 13 46 chr11 106902046 106902197 -14941659 - B1_Mur3 SINE Alu -2 147 2 1 1400 252 0 0 0 chr11 106902287 106902315 -14941541 + (CCA)n Simple_repeat Simple_repeat 1 28 0 1 1400 603 155 57 19 chr11 106902372 106902477 -14941379 - B1_Mus1 SINE Alu 0 148 40 1 1400 351 304 44 0 chr11 106902551 106902659 -14941197 + PB1D7 SINE Alu 3 117 -3 1 1400 250 252 56 83 chr11 106902842 106902950 -14940906 + PB1D7 SINE Alu 1 105 -15 1 1400 326 298 88 44 chr11 106903053 106903190 -14940666 - B3 SINE B2 -73 143 1 1 1400 251 188 62 0 chr11 106903705 106903753 -14940103 - L1MC LINE L1 -2257 5625 5575 1 1400 303 122 0 0 chr11 106904147 106904196 -14939660 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 1400 226 0 29 29 chr11 106904354 106904389 -14939467 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 1 1400 372 137 0 5 chr11 106904401 106904466 -14939390 - B2_Mm2 SINE B2 -107 109 47 1 1400 247 116 115 19 chr11 106904487 106904547 -14939309 - B2_Mm2 SINE B2 -63 130 66 1 1400 198 0 0 0 chr11 106906570 106906592 -14937264 + (GGGGA)n Simple_repeat Simple_repeat 1 22 0 1 1400 206 100 32 32 chr11 106907666 106907728 -14936128 + A-rich Low_complexity Low_complexity 5 66 0 1 1400 321 89 0 0 chr11 106907934 106907979 -14935877 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1400 399 147 80 0 chr11 106908765 106908840 -14935016 - B1_Mus2 SINE Alu 0 147 67 1 1400 279 159 0 87 chr11 106908788 106908857 -14934999 - RLTR25A LTR ERVK -537 566 504 1 1400 524 248 9 0 chr11 106908945 106909058 -14934798 + ID_B1 SINE B4 106 219 -5 1 1400 220 293 158 87 chr11 106909139 106909266 -14934590 + B4 SINE B4 2 137 -155 1 1400 324 0 0 0 chr11 106909288 106909324 -14934532 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1400 510 202 21 11 chr11 106909371 106909466 -14934390 + B1F2 SINE Alu 1 96 -53 1 1400 477 126 130 163 chr11 106909499 106909595 -14934261 + URR1A DNA MER1_type 83 185 -41 1 1400 1163 49 0 65 chr11 106909595 106909749 -14934107 - B1_Mus1 SINE Alu -3 145 2 1 1400 477 126 130 163 chr11 106909749 106909775 -14934081 + URR1A DNA MER1_type 186 201 -25 1 1400 227 125 0 0 chr11 106910948 106910980 -14932876 + URR1A DNA MER1_type 169 200 -26 1 1400 352 131 15 76 chr11 106912465 106912531 -14931325 + URR1A DNA MER1_type 164 225 -1 1 1400 590 138 0 12 chr11 106912625 106912732 -14931124 + B1_Mur3 SINE Alu 45 149 0 1 1400 372 189 0 0 chr11 106912774 106912848 -14931008 + (CCCG)n Simple_repeat Simple_repeat 2 75 0 1 1400 269 260 106 0 chr11 106913166 106913270 -14930586 + PB1D10 SINE Alu 3 117 0 1 1400 762 117 12 131 chr11 106913403 106913571 -14930285 - B1_Mus1 SINE Alu 0 148 1 1 1400 204 40 0 0 chr11 106916476 106916501 -14927355 + (CTGGGG)n Simple_repeat Simple_repeat 4 28 0 1 1400 213 39 0 0 chr11 106917209 106917235 -14926621 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1 1400 719 48 56 0 chr11 106917923 106918048 -14925808 + (GA)n Simple_repeat Simple_repeat 1 132 0 1 1400 329 286 133 0 chr11 106918066 106918164 -14925692 + ID_B1 SINE B4 3 113 -111 1 1400 330 300 110 0 chr11 106918419 106918519 -14925337 - PB1D10 SINE Alu 0 117 7 1 1400 402 358 72 7 chr11 106918448 106918600 -14925256 - ID_B1 SINE B4 -58 166 5 1 1400 220 243 141 51 chr11 106918624 106918702 -14925154 - RSINE1 SINE B4 0 165 81 1 1400 530 280 101 77 chr11 106918703 106918912 -14924944 - B3 SINE B2 0 216 3 1 1400 538 295 77 24 chr11 106919034 106919204 -14924652 - B3 SINE B2 -36 180 2 1 1400 737 219 85 20 chr11 106919642 106919842 -14924014 - B3 SINE B2 -3 213 1 1 1400 682 196 42 7 chr11 106920354 106920498 -14923358 + B1_Mur4 SINE Alu 2 150 0 1 1400 535 260 144 0 chr11 106920770 106920951 -14922905 + B3 SINE B2 10 216 0 1 1400 677 180 49 21 chr11 106921932 106922074 -14921782 + B1_Mm SINE Alu 1 146 -1 1 1400 288 266 0 0 chr11 106922126 106922190 -14921666 - PB1D9 SINE Alu -33 87 24 1 1400 22 0 0 0 chr11 106922641 106922663 -14921193 + AT_rich Low_complexity Low_complexity 1 22 0 1 1400 1234 14 14 7 chr11 106922731 106922877 -14920979 + B1_Mus2 SINE Alu 1 147 0 1 1400 495 237 70 0 chr11 106924506 106924620 -14919236 - B1F SINE Alu -3 146 25 1 1400 349 244 0 13 chr11 106924685 106924764 -14919092 + ID4_ SINE ID 5 82 -1 1 1400 551 244 38 0 chr11 106924876 106925007 -14918849 + B1_Mur3 SINE Alu 2 137 -12 1 1400 270 0 0 0 chr11 106925007 106925037 -14918819 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1 1400 303 267 40 0 chr11 106925300 106925375 -14918481 + PB1D7 SINE Alu 35 112 -8 1 1400 559 237 15 0 chr11 106925386 106925517 -14918339 + B1F SINE Alu 1 133 -16 1 1400 1537 58 5 0 chr11 106925665 106925856 -14918000 - B2_Mm1a SINE B2 0 193 2 1 1400 848 182 91 5 chr11 106926302 106926501 -14917355 + B3 SINE B2 1 216 0 1 1400 619 154 284 44 chr11 106927648 106927803 -14916053 + B3 SINE B2 14 205 -11 1 1400 246 248 187 37 chr11 106928109 106928170 -14915686 - B4 SINE B4 -138 154 1 1 1400 428 178 96 0 chr11 106928170 106928243 -14915613 - B3A SINE B2 -118 80 1 1 1400 372 188 29 0 chr11 106928248 106928320 -14915536 - PB1D7 SINE Alu 0 127 46 1 1400 419 201 22 14 chr11 106928824 106928923 -14914933 - B1F SINE Alu -21 129 29 1 1400 242 311 0 16 chr11 106929183 106929245 -14914611 - ID_B1 SINE B4 -134 90 30 1 1400 269 269 0 3 chr11 106929191 106929262 -14914594 - ID4 SINE ID -70 82 13 1 1400 186 43 0 0 chr11 106929285 106929308 -14914548 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1400 287 303 0 53 chr11 106929323 106929417 -14914439 - PB1 SINE Alu -38 89 1 1 1400 246 288 0 29 chr11 106929487 106929555 -14914301 - ID SINE ID -157 67 2 1 1400 791 150 47 0 chr11 106930969 106931096 -14912760 - B1_Mur4 SINE Alu -13 137 5 1 1400 372 94 0 0 chr11 106931499 106931552 -14912304 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1400 1133 62 0 27 chr11 106931714 106931855 -14912001 + B1_Mus1 SINE Alu 3 140 -8 1 1400 229 26 26 26 chr11 106931855 106931894 -14911962 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1400 309 250 67 0 chr11 106932191 106932284 -14911572 + PB1D7 SINE Alu 16 119 -30 1 1400 270 0 0 0 chr11 106932292 106932322 -14911534 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 1400 207 0 0 0 chr11 106933155 106933178 -14910678 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1400 466 294 113 42 chr11 106936674 106936887 -14906969 - B4A SINE B4 -60 232 5 1 1400 1209 101 34 0 chr11 106936929 106937108 -14906748 - B2_Mm1a SINE B2 -7 186 2 1 1400 417 242 60 190 chr11 106937264 106937339 -14906517 + B4 SINE B4 45 95 -197 1 1400 556 241 50 5 chr11 106937339 106937479 -14906377 + B1F2 SINE Alu 1 142 -7 1 1400 364 258 98 38 chr11 106937572 106937705 -14906151 + L1MB8 LINE L1 5821 5961 -217 1 1400 914 246 0 40 chr11 106938338 106938562 -14905294 + B3 SINE B2 1 215 -1 1 1400 252 86 0 0 chr11 106938700 106938735 -14905121 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1400 849 139 22 0 chr11 106938750 106938887 -14904969 + B1_Mur3 SINE Alu 10 149 0 1 1400 235 295 0 32 chr11 106939239 106939302 -14904554 + RSINE1 SINE B4 63 123 -42 1 1400 351 0 0 0 chr11 106939302 106939341 -14904515 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1400 21 0 0 0 chr11 106939374 106939395 -14904461 + AT_rich Low_complexity Low_complexity 1 21 0 1 1400 1203 71 101 0 chr11 106939398 106939566 -14904290 + B2_Mm2 SINE B2 3 187 -8 1 1400 201 298 18 0 chr11 106939884 106939941 -14903915 + CT-rich Low_complexity Low_complexity 4 61 0 1 1400 282 313 29 29 chr11 106940893 106940995 -14902861 - PB1D10 SINE Alu 0 117 16 1 1400 780 256 65 20 chr11 106941026 106941225 -14902631 - B3 SINE B2 -1 215 8 1 1400 327 265 163 0 chr11 106941250 106941348 -14902508 - PB1D9 SINE Alu -6 114 1 1 1400 371 275 46 77 chr11 106941348 106941423 -14902433 - B4A SINE B4 -207 85 15 1 1400 475 337 11 17 chr11 106941512 106941687 -14902169 + Lx8 LINE L1 6826 6999 -474 1 1400 239 114 0 22 chr11 106941809 106941854 -14902002 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1400 363 232 60 10 chr11 106943076 106943176 -14900680 + PB1D10 SINE Alu 1 105 -12 1 1400 401 264 78 39 chr11 106943194 106943348 -14900508 + RSINE1 SINE B4 3 162 -3 1 1400 230 243 50 75 chr11 106943656 106943736 -14900120 - B3A SINE B2 -18 180 103 1 1400 379 340 84 94 chr11 106946577 106946970 -14896886 + MLT1K LTR MaLR 194 582 -13 1 1400 201 39 0 0 chr11 106947903 106947929 -14895927 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 1 1400 181 317 17 0 chr11 106948099 106948159 -14895697 + L3 LINE CR1 4325 4385 -104 1 1400 419 279 13 97 chr11 106949375 106949530 -14894326 + RSINE1 SINE B4 3 144 -21 1 1400 249 33 0 0 chr11 106949544 106949574 -14894282 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1 1400 744 211 8 0 chr11 106949612 106949745 -14894111 + B3A SINE B2 20 153 -45 1 1400 24 53 0 0 chr11 106949820 106949858 -14893998 + AT_rich Low_complexity Low_complexity 1 38 0 1 1400 249 200 67 0 chr11 106949897 106949957 -14893899 + ID4 SINE ID 2 65 -18 1 1400 387 0 0 0 chr11 106950118 106950161 -14893695 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1400 284 215 37 25 chr11 106950200 106950281 -14893575 + ID4_ SINE ID 1 82 -1 1 1400 365 244 69 69 chr11 106950510 106950655 -14893201 - RSINE1 SINE B4 -19 146 2 1 1400 389 276 79 46 chr11 106950836 106950988 -14892868 - RSINE1 SINE B4 -7 158 2 1 1400 442 303 60 5 chr11 106950997 106951196 -14892660 + L1M5 LINE L1 3634 3843 -2303 1 1400 324 0 0 0 chr11 106951300 106951336 -14892520 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1400 583 303 40 20 chr11 106951482 106951681 -14892175 + B3 SINE B2 4 206 -10 1 1400 276 231 312 21 chr11 106951847 106951940 -14891916 + PB1D9 SINE Alu 1 120 0 1 1400 793 197 0 0 chr11 106951983 106952115 -14891741 + B1_Mus2 SINE Alu 3 134 -13 1 1400 213 39 0 0 chr11 106952118 106952144 -14891712 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1400 240 200 0 0 chr11 106952169 106952219 -14891637 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1400 776 82 205 0 chr11 106952364 106952486 -14891370 - B1_Mm SINE Alu 0 147 1 1 1400 4010 168 121 22 chr11 106952486 106953289 -14890567 - RMER19B LTR ERVK -18 884 3 1 1400 558 229 97 35 chr11 106953289 106953475 -14890381 + B3 SINE B2 37 216 0 1 1400 1459 68 10 15 chr11 106953527 106953722 -14890134 + B2_Mm2 SINE B2 2 195 0 1 1400 551 232 97 14 chr11 106954305 106954449 -14889407 + RSINE1 SINE B4 4 159 -6 1 1400 1404 18 0 23 chr11 106954490 106954652 -14889204 + B2_Mm1t SINE B2 2 163 -30 1 1400 324 64 0 0 chr11 106954652 106954699 -14889157 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 1401 237 210 30 19 chr11 106955195 106955261 -14888595 - PB1D9 SINE Alu -8 141 63 1 1401 456 170 223 0 chr11 106957324 106957436 -14886420 + B1_Mur2 SINE Alu 2 138 -11 1 1401 379 307 7 73 chr11 106957629 106957650 -14886206 + ID_B1 SINE B4 75 215 -9 1 1401 651 227 8 15 chr11 106957650 106957780 -14886076 + B1_Mur1 SINE Alu 12 140 -9 1 1401 405 0 0 0 chr11 106958007 106958052 -14885804 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1401 423 0 0 0 chr11 106958162 106958209 -14885647 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1401 385 253 21 12 chr11 106958579 106958677 -14885179 - PB1D10 SINE Alu -7 110 5 1 1401 906 166 0 7 chr11 106958769 106958915 -14884941 + B1_Mur3 SINE Alu 4 148 -1 1 1401 1591 47 0 5 chr11 106958921 106959114 -14884742 + B2_Mm1a SINE B2 1 192 -1 1 1401 267 175 0 0 chr11 106959131 106959188 -14884668 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1401 770 212 92 0 chr11 106959190 106959374 -14884482 - B3 SINE B2 -15 201 1 1 1401 260 236 111 0 chr11 106959441 106959526 -14884330 - L1MD3 LINE L1 -1021 6974 6885 1 1401 718 153 65 0 chr11 106959559 106959683 -14884173 - B1_Mus1 SINE Alu 0 148 17 1 1401 357 312 34 14 chr11 106960314 106960460 -14883396 + B1F1 SINE Alu 1 149 0 1 1401 1193 54 14 0 chr11 106960460 106960607 -14883249 + B1_Mur4 SINE Alu 1 150 0 1 1401 295 294 0 144 chr11 106961789 106961890 -14881966 - B3A SINE B2 -35 160 1 1 1401 321 226 70 23 chr11 106961890 106961976 -14881880 - B4A SINE B4 -202 90 1 1 1401 180 0 0 0 chr11 106961985 106962005 -14881851 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1401 243 146 0 0 chr11 106962103 106962144 -14881712 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 1 1401 192 182 0 0 chr11 106962850 106962894 -14880962 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1401 230 309 138 0 chr11 106962914 106963008 -14880848 + RSINE1 SINE B4 14 120 -45 1 1401 438 94 0 0 chr11 106963008 106963072 -14880784 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1401 24 0 0 0 chr11 106963583 106963607 -14880249 + AT_rich Low_complexity Low_complexity 1 24 0 1 1401 371 208 112 9 chr11 106963614 106963721 -14880135 - B3A SINE B2 -80 118 1 1 1401 251 243 301 0 chr11 106964946 106965049 -14878807 + MLT1-int LTR MaLR 2 135 -1236 1 1401 488 239 1 10 chr11 106965814 106965927 -14877929 + PB1D9 SINE Alu 12 126 -23 1 1401 911 168 90 20 chr11 106965927 106966128 -14877728 + B3 SINE B2 2 216 0 1 1401 443 269 28 50 chr11 106966128 106966155 -14877701 + B1_Mur1 SINE Alu 127 149 0 1 1401 282 29 0 0 chr11 106966614 106966649 -14877207 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1401 651 193 111 42 chr11 106966652 106966841 -14877015 - B3 SINE B2 -14 202 1 1 1401 726 33 22 0 chr11 106967125 106967216 -14876640 - B1_Mus2 SINE Alu -8 139 47 1 1401 260 254 72 29 chr11 106967158 106967227 -14876629 - RLTR25B LTR ERVK -519 509 438 1 1401 1599 53 0 0 chr11 106967232 106967420 -14876436 - B2_Mm1a SINE B2 -5 188 1 1 1401 237 297 113 49 chr11 106967458 106967612 -14876244 + MIRb SINE MIR 53 222 -46 1 1401 873 149 35 49 chr11 106968023 106968245 -14875611 + Lx3_Mus LINE L1 6749 6979 -2 1 1401 281 239 22 43 chr11 106968298 106968390 -14875466 + PB1D10 SINE Alu 26 115 -2 1 1401 386 326 81 81 chr11 106968760 106969107 -14874749 + HAL1 LINE L1 621 967 -1540 1 1401 234 250 0 0 chr11 106969113 106969165 -14874691 + B1F1 SINE Alu 1 52 -97 1 1401 292 282 38 13 chr11 106969211 106969290 -14874566 + B1F SINE Alu 3 83 -66 1 1401 23 33 0 0 chr11 106969296 106969326 -14874530 + AT_rich Low_complexity Low_complexity 1 30 0 1 1401 1777 216 37 8 chr11 106969435 106969790 -14874066 + Lx5 LINE L1 6668 7032 -18 1 1401 234 0 0 0 chr11 106969790 106969816 -14874040 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 1401 214 152 0 0 chr11 106969824 106969857 -14873999 + B3 SINE B2 1 33 -183 1 1401 514 195 44 0 chr11 106969884 106969997 -14873859 - PB1D9 SINE Alu -1 119 2 1 1401 394 243 252 0 chr11 106970019 106970130 -14873726 + B3 SINE B2 36 174 -42 1 1401 673 125 0 16 chr11 106970142 106970264 -14873592 + (TAGA)n Simple_repeat Simple_repeat 2 121 0 1 1401 640 247 85 11 chr11 106970275 106970463 -14873393 + B3 SINE B2 1 202 -14 1 1401 1412 75 5 11 chr11 106970508 106970696 -14873160 - B2_Mm1a SINE B2 -6 187 1 1 1401 180 0 0 0 chr11 106970712 106970732 -14873124 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1401 321 197 38 50 chr11 106970736 106970816 -14873040 + B1_Mur1 SINE Alu 40 118 -31 1 1401 411 73 0 0 chr11 106970894 106970949 -14872907 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1 1401 371 202 12 37 chr11 106971500 106971582 -14872274 - ID4_ SINE ID -3 80 1 1 1401 290 233 63 53 chr11 106971582 106971677 -14872179 - ID_B1 SINE B4 0 224 129 1 1401 422 307 57 51 chr11 106973051 106973131 -14870725 + ID SINE ID 1 81 -143 1 1401 568 200 29 0 chr11 106973131 106973236 -14870620 + PB1D9 SINE Alu 1 108 -12 1 1401 225 0 0 0 chr11 106973236 106973261 -14870595 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1 1401 242 250 0 19 chr11 106973295 106973348 -14870508 - PB1D7 SINE Alu -7 113 62 1 1401 1117 72 0 0 chr11 106973395 106973534 -14870322 + B1_Mus2 SINE Alu 1 139 -8 1 1401 300 154 0 71 chr11 106973655 106973711 -14870145 - B1_Mus2 SINE Alu -1 146 95 1 1401 229 214 24 0 chr11 106973701 106973743 -14870113 - B1F2 SINE Alu -106 43 1 1 1401 252 192 117 52 chr11 106973917 106973994 -14869862 + RSINE1 SINE B4 84 165 0 1 1401 880 61 128 15 chr11 106974168 106974301 -14869555 + B1_Mus1 SINE Alu 1 148 0 1 1401 1463 124 24 5 chr11 106974832 106975043 -14868813 + B3 SINE B2 1 215 -1 1 1401 432 0 0 0 chr11 106975191 106975239 -14868617 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1401 516 172 48 39 chr11 106975898 106976001 -14867855 - B1_Mur2 SINE Alu -11 138 35 1 1401 262 295 82 21 chr11 106975935 106976032 -14867824 - MT2B LTR ERVL -344 257 155 1 1401 364 143 378 0 chr11 106976044 106976142 -14867714 - B1_Mur3 SINE Alu -14 135 1 1 1401 311 247 21 12 chr11 106976348 106976466 -14867390 + B1F SINE Alu 23 140 -9 1 1401 231 36 0 0 chr11 106976466 106976494 -14867362 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1401 256 143 36 0 chr11 106976653 106976709 -14867147 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1401 487 266 94 17 chr11 106976758 106976938 -14866918 + RMER10B LTR ERVL 194 387 -11 1 1401 1354 82 44 0 chr11 106977444 106977627 -14866229 - B2_Mm2 SINE B2 -4 191 1 1 1401 356 19 18 71 chr11 106977629 106977670 -14866186 + B2_Mm1a SINE B2 120 160 -33 1 1401 207 0 0 0 chr11 106977670 106977693 -14866163 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1401 356 19 18 71 chr11 106977693 106977707 -14866149 + B2_Mm1a SINE B2 161 172 -21 1 1401 781 135 240 6 chr11 106977812 106977983 -14865873 + B3 SINE B2 5 215 -1 1 1401 275 210 48 16 chr11 106978118 106978181 -14865675 + B1_Mm SINE Alu 31 95 -52 1 1401 231 36 0 0 chr11 106978323 106978351 -14865505 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1401 367 314 48 48 chr11 106978799 106978923 -14864933 + RSINE1 SINE B4 2 125 -40 1 1401 245 89 22 0 chr11 106978946 106978991 -14864865 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1401 1155 68 0 13 chr11 106979918 106980068 -14863788 + B1_Mus1 SINE Alu 1 148 0 1 1401 337 287 35 0 chr11 106980091 106980206 -14863650 + MER3 DNA MER1_type 57 175 -34 1 1401 1493 64 0 11 chr11 106980350 106980540 -14863316 + B2_Mm1a SINE B2 2 189 -4 1 1401 460 226 29 19 chr11 106980579 106980683 -14863173 + RSINE1 SINE B4 21 125 -40 1 1401 279 0 0 0 chr11 106980684 106980715 -14863141 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1401 379 263 79 43 chr11 106980736 106980752 -14863104 + B4 SINE B4 76 219 -73 1 1401 680 179 73 0 chr11 106980752 106980875 -14862981 + B1_Mus2 SINE Alu 9 140 -7 1 1401 1202 61 0 7 chr11 106980885 106981033 -14862823 + B1_Mus2 SINE Alu 1 147 0 1 1401 212 149 0 21 chr11 106981037 106981085 -14862771 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1401 212 208 133 40 chr11 106981085 106981160 -14862696 + ID4_ SINE ID 2 83 0 1 1401 240 294 26 68 chr11 106981178 106981295 -14862561 + PB1D10 SINE Alu 2 113 -4 1 1401 623 208 0 0 chr11 106981432 106981538 -14862318 - B1_Mur2 SINE Alu -2 147 42 1 1401 291 261 158 8 chr11 106981538 106981744 -14862112 + L1MB7 LINE L1 5639 5875 -309 1 1401 733 175 35 7 chr11 106981744 106981888 -14861968 + B1_Mur3 SINE Alu 1 148 -1 1 1401 291 261 158 8 chr11 106981888 106981928 -14861928 + L1MB7 LINE L1 5876 5921 -263 1 1401 405 214 35 12 chr11 106981928 106982013 -14861843 - PB1D10 SINE Alu 0 117 31 1 1401 1196 74 0 0 chr11 106982151 106982299 -14861557 + B1_Mus1 SINE Alu 1 148 0 1 1401 3852 27 9 2 chr11 106982431 106982879 -14860977 + L1Md_F3 LINE L1 6134 6584 0 1 1401 422 260 59 59 chr11 106982928 106983063 -14860793 + RSINE1 SINE B4 10 144 -21 1 1401 838 145 72 0 chr11 106983173 106983311 -14860545 - B1_Mur2 SINE Alu -1 148 1 1 1401 260 121 101 0 chr11 106983342 106983399 -14860457 - PB1D10 SINE Alu -2 118 49 1 1401 491 261 9 9 chr11 106983911 106984027 -14859829 + PB1D7 SINE Alu 3 118 -2 1 1401 658 229 138 11 chr11 106984032 106984213 -14859643 + B3 SINE B2 1 204 -12 1 1401 1279 92 0 17 chr11 106984240 106984416 -14859440 + B2_Mm2 SINE B2 3 175 -20 1 1401 925 75 105 0 chr11 106984526 106984659 -14859197 + B1_Mus1 SINE Alu 2 148 0 1 1401 469 262 185 63 chr11 106984693 106984856 -14859000 + B3 SINE B2 2 186 -30 1 1401 543 231 51 29 chr11 106986475 106986613 -14857243 + B1F1 SINE Alu 1 141 -8 1 1401 216 0 0 0 chr11 106986633 106986657 -14857199 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1401 1678 31 0 0 chr11 106986847 106987039 -14856817 - B2_Mm1a SINE B2 0 193 2 1 1401 566 229 196 0 chr11 106987067 106987246 -14856610 - B3 SINE B2 0 216 3 1 1401 213 39 0 0 chr11 106987249 106987275 -14856581 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 1 1401 248 221 34 69 chr11 106987413 106987542 -14856314 + B1F1 SINE Alu 7 120 0 1 1401 625 174 104 15 chr11 106987566 106987700 -14856156 + B1_Mus2 SINE Alu 1 146 -1 1 1401 1728 189 79 33 chr11 106987804 106988198 -14855658 + MTC LTR MaLR 1 412 -9 1 1401 282 123 0 0 chr11 106988275 106988332 -14855524 + (T)n Simple_repeat Simple_repeat 1 57 0 1 1401 1144 75 0 0 chr11 106988332 106988479 -14855377 - B1_Mus2 SINE Alu 0 147 1 1 1401 240 301 0 8 chr11 106988372 106988496 -14855360 - ORR1B1-int LTR MaLR -755 754 632 1 1401 781 241 48 19 chr11 106988538 106988745 -14855111 - ID_B1 SINE B4 -10 214 2 1 1401 708 211 7 45 chr11 106988926 106989080 -14854776 - B1_Mur2 SINE Alu 0 149 2 1 1401 331 135 0 0 chr11 106989113 106989165 -14854691 - B1_Mur4 SINE Alu 0 150 99 1 1401 1062 85 43 0 chr11 106989209 106989350 -14854506 + B1_Mus1 SINE Alu 2 148 0 1 1401 341 237 117 68 chr11 106989634 106989797 -14854059 + B3A SINE B2 27 197 -1 1 1401 1220 35 14 0 chr11 106989918 106990063 -14853793 + B1_Mm SINE Alu 1 147 0 1 1401 207 88 0 0 chr11 106990063 106990097 -14853759 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1401 1182 97 17 22 chr11 106990309 106990488 -14853368 + B2_Mm1t SINE B2 2 179 -14 1 1401 407 86 300 12 chr11 106990515 106990629 -14853227 + B2_Mm2 SINE B2 46 193 -2 1 1401 1395 58 16 26 chr11 106990629 106990823 -14853033 + B2_Mm1a SINE B2 2 193 0 1 1401 261 98 0 0 chr11 106992398 106992439 -14851417 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1401 264 294 0 44 chr11 106992644 106992754 -14851102 + (TCG)n Simple_repeat Simple_repeat 2 107 0 1 1401 210 37 0 0 chr11 106992754 106992781 -14851075 + (TCC)n Simple_repeat Simple_repeat 1 27 0 1 1401 264 294 0 44 chr11 106992781 106992830 -14851026 + (TCG)n Simple_repeat Simple_repeat 3 49 0 1 1401 37 86 0 0 chr11 106992845 106992938 -14850918 + GC_rich Low_complexity Low_complexity 1 93 0 1 1401 468 51 0 0 chr11 106993108 106993167 -14850689 + (CGG)n Simple_repeat Simple_repeat 2 60 0 1 1401 180 233 0 0 chr11 106993254 106993327 -14850529 + G-rich Low_complexity Low_complexity 1 73 0 1 1401 23 68 0 0 chr11 106993327 106993371 -14850485 + GC_rich Low_complexity Low_complexity 1 44 0 1 1401 31 96 0 0 chr11 106993538 106993632 -14850224 + GC_rich Low_complexity Low_complexity 1 94 0 1 1401 598 219 79 21 chr11 106994679 106994819 -14849037 - B1_Mur1 SINE Alu 0 149 2 1 1401 367 264 32 0 chr11 106994828 106994929 -14848927 - B1F1 SINE Alu -8 109 7 1 1401 234 81 0 0 chr11 106995066 106995103 -14848753 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1 1401 378 0 0 0 chr11 106995106 106995148 -14848708 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1401 262 279 38 52 chr11 106995175 106995310 -14848546 + RSINE1 SINE B4 4 135 -157 1 1401 1463 53 11 11 chr11 106995409 106995600 -14848256 + B2_Mm1t SINE B2 2 192 -1 1 1401 1284 27 0 0 chr11 106995629 106995776 -14848080 - B1_Mm SINE Alu 0 147 1 1 1401 1699 26 0 0 chr11 106995806 106995999 -14847857 + B2_Mm1a SINE B2 1 193 0 1 1401 414 216 102 0 chr11 106996033 106996121 -14847735 - ID_B1 SINE B4 -5 219 123 1 1401 323 263 263 0 chr11 106996121 106996147 -14847709 - B1F2 SINE Alu -5 144 1 1 1401 225 0 0 0 chr11 106996151 106996176 -14847680 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1401 249 345 11 44 chr11 106996314 106996405 -14847451 - FAM SINE Alu -77 234 147 1 1401 387 60 0 0 chr11 106996502 106996552 -14847304 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1401 1198 58 121 11 chr11 106996641 106996815 -14847041 - B2_Mm2 SINE B2 -1 194 2 1 1401 483 135 0 26 chr11 106996817 106996828 -14847028 - B1_Mus2 SINE Alu -14 133 124 1 1401 207 0 0 0 chr11 106996828 106996851 -14847005 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1401 483 142 0 28 chr11 106996851 106996924 -14846932 - B1_Mus2 SINE Alu -24 123 56 1 1401 711 259 54 0 chr11 106997211 106997377 -14846479 + B3A SINE B2 2 176 -22 1 1401 625 214 122 0 chr11 106997420 106997551 -14846305 + B1_Mur1 SINE Alu 3 149 0 1 1401 641 174 91 0 chr11 106997591 106997712 -14846144 + B1_Mus1 SINE Alu 4 135 -13 1 1401 1190 68 0 0 chr11 106997792 106997939 -14845917 + B1_Mm SINE Alu 1 147 0 1 1401 749 41 10 0 chr11 106997947 106998045 -14845811 + B1_Mus2 SINE Alu 1 99 -48 1 1401 232 246 18 0 chr11 106998090 106998147 -14845709 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1401 1209 62 0 0 chr11 106998249 106998395 -14845461 - B1_Mus2 SINE Alu 0 147 2 1 1401 726 44 0 0 chr11 106998519 106998610 -14845246 + B1_Mm SINE Alu 57 147 0 1 1401 1246 48 0 0 chr11 106998672 106998819 -14845037 - B1_Mm SINE Alu 0 147 1 1 1401 311 316 0 59 chr11 106998819 106998881 -14844975 + B3A SINE B2 89 148 -50 1 1401 357 24 0 0 chr11 106998881 106998923 -14844933 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1401 311 200 72 96 chr11 106998923 106998973 -14844883 + B3A SINE B2 137 184 -11 1 1401 985 76 0 138 chr11 106999531 106999591 -14844265 + B1_Mus1 SINE Alu 5 63 -85 1 1401 1227 54 0 0 chr11 106999591 106999738 -14844118 - B1_Mm SINE Alu 0 147 1 1 1401 985 76 0 138 chr11 106999738 106999844 -14844012 + B1_Mus1 SINE Alu 64 148 0 1 1401 217 175 0 24 chr11 106999855 106999896 -14843960 + B1_Mur3 SINE Alu 92 131 -18 1 1401 994 130 42 63 chr11 107000043 107000232 -14843624 + B2_Mm2 SINE B2 2 186 -9 1 1401 679 78 276 0 chr11 107000235 107000351 -14843505 + B1_Mus1 SINE Alu 1 148 0 2 1401 187 93 23 23 chr11 107000351 107000364 -14843492 + (CAAAAA)n Simple_repeat Simple_repeat 4 16 0 3 1401 1545 67 0 5 chr11 107000364 107000558 -14843298 + B2_Mm1a SINE B2 1 193 0 4 1401 187 93 23 23 chr11 107000558 107000588 -14843268 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 5 1401 328 138 103 0 chr11 107000600 107000658 -14843198 + B1_Mus1 SINE Alu 1 64 -84 6 1401 225 276 112 22 chr11 107000716 107000805 -14843051 + PB1D9 SINE Alu 19 115 -5 7 1401 338 33 32 32 chr11 107000848 107000910 -14842946 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 8 1401 1182 43 0 0 chr11 107000910 107001048 -14842808 - B1_Mus1 SINE Alu -10 138 1 9 1401 859 185 14 0 chr11 107001048 107001193 -14842663 - B1_Mur4 SINE Alu -2 148 1 1 1401 242 210 0 0 chr11 107001218 107001280 -14842576 + T-rich Low_complexity Low_complexity 1 62 0 1 1401 1029 43 0 14 chr11 107001282 107001425 -14842431 - B1_Mm SINE Alu -1 146 6 1 1401 1179 111 17 0 chr11 107001426 107001598 -14842258 - B2_Mm1t SINE B2 -17 176 2 1 1401 206 0 69 0 chr11 107001606 107001635 -14842221 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1401 797 57 5 0 chr11 107001648 107001768 -14842088 - B1_Mm SINE Alu -2 147 22 1 1401 216 0 0 0 chr11 107001771 107001795 -14842061 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1401 1220 110 11 0 chr11 107001795 107001977 -14841879 - B2_Mm1t SINE B2 -8 185 2 1 1401 563 264 54 38 chr11 107001977 107002162 -14841694 - B3A SINE B2 -1 197 10 1 1401 805 249 41 32 chr11 107002335 107002555 -14841301 + ID_B1 SINE B4 3 224 0 1 1401 1525 26 5 77 chr11 107003124 107003331 -14840525 + B2_Mm1t SINE B2 2 193 0 2 1401 1177 78 78 0 chr11 107003347 107003514 -14840342 + B2_Mm1t SINE B2 1 180 -13 2 1401 346 60 360 20 chr11 107003535 107003635 -14840221 + B2_Mm2 SINE B2 47 180 -15 2 1401 189 0 0 0 chr11 107003636 107003657 -14840199 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1401 387 0 0 0 chr11 107003687 107003730 -14840126 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1401 227 293 85 0 chr11 107003730 107003812 -14840044 - B4A SINE B4 -201 91 3 2 1401 328 233 103 79 chr11 107003831 107003957 -14839899 + LTR88b LTR Gypsy? 695 823 -14 2 1401 219 365 35 0 chr11 107004084 107004157 -14839699 + PB1D7 SINE Alu 2 77 -43 2 1401 1128 172 45 237 chr11 107004157 107004240 -14839616 + MTC LTR MaLR 1 80 -341 2 1401 1157 61 7 0 chr11 107004240 107004387 -14839469 + B1_Mus1 SINE Alu 1 148 0 2 1401 1128 172 45 237 chr11 107004387 107004425 -14839431 + MTC LTR MaLR 81 82 -339 2 1401 2495 26 6 64 chr11 107004425 107004755 -14839101 + L1Md_F2 LINE L1 6272 6582 0 3 1401 1128 172 45 237 chr11 107004755 107004863 -14838993 + MTC LTR MaLR 83 208 -213 2 1401 1123 55 7 14 chr11 107004863 107005011 -14838845 + B1_Mus1 SINE Alu 2 148 0 3 1401 1128 172 45 237 chr11 107005011 107005025 -14838831 + MTC LTR MaLR 209 215 -206 2 1401 606 63 0 0 chr11 107005025 107005104 -14838752 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1401 1128 172 45 237 chr11 107005104 107005133 -14838723 + MTC LTR MaLR 216 220 -201 2 1401 1526 56 0 25 chr11 107005133 107005333 -14838523 + B2_Mm2 SINE B2 1 195 0 3 1401 1128 172 45 237 chr11 107005333 107005345 -14838511 + MTC LTR MaLR 221 221 -200 2 1401 225 0 0 0 chr11 107005345 107005370 -14838486 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 3 1401 1128 172 45 237 chr11 107005370 107005501 -14838355 + MTC LTR MaLR 221 341 -80 2 1401 975 31 148 0 chr11 107005501 107005629 -14838227 + B1_Mm SINE Alu 1 147 0 3 1401 1128 172 45 237 chr11 107005629 107005718 -14838138 + MTC LTR MaLR 342 412 -9 2 1401 188 100 0 24 chr11 107005780 107005821 -14838035 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1401 302 204 0 0 chr11 107005828 107005882 -14837974 - B1_Mur4 SINE Alu -94 56 3 3 1401 410 130 66 138 chr11 107005946 107006098 -14837758 + B1_Mus2 SINE Alu 7 147 0 3 1401 650 148 145 23 chr11 107006181 107006312 -14837544 + B1_Mus1 SINE Alu 1 147 -1 3 1401 22 0 0 0 chr11 107006312 107006334 -14837522 + AT_rich Low_complexity Low_complexity 1 22 0 4 1401 309 109 0 0 chr11 107006341 107006387 -14837469 + (A)n Simple_repeat Simple_repeat 1 46 0 4 1401 251 265 14 68 chr11 107006566 107006615 -14837241 + ID_B1 SINE B4 81 125 -99 4 1401 936 102 16 116 chr11 107006615 107006654 -14837202 + B2_Mm2 SINE B2 3 28 -167 4 1401 1162 75 0 0 chr11 107006654 107006801 -14837055 + B1_Mm SINE Alu 1 147 0 4 1401 936 102 16 116 chr11 107006801 107006950 -14836906 + B2_Mm2 SINE B2 29 172 -23 4 1401 445 216 113 0 chr11 107006951 107007048 -14836808 + B1F2 SINE Alu 33 140 -9 4 1401 302 255 83 56 chr11 107007048 107007059 -14836797 + ID_B1 SINE B4 114 224 0 4 1401 814 45 0 0 chr11 107007097 107007207 -14836649 + B1_Mm SINE Alu 38 147 0 4 1401 282 254 0 0 chr11 107007226 107007289 -14836567 + B3 SINE B2 1 63 -153 4 1401 508 121 121 0 chr11 107007350 107007441 -14836415 + B1_Mur3 SINE Alu 48 149 0 4 1401 815 56 0 0 chr11 107007442 107007549 -14836307 + B1_Mus2 SINE Alu 1 107 -40 5 1401 1192 100 50 6 chr11 107007617 107007798 -14836058 - B2_Mm2 SINE B2 -5 190 2 5 1401 1208 55 0 7 chr11 107007845 107007993 -14835863 - B1_Mm SINE Alu 0 147 1 5 1401 387 183 0 0 chr11 107008013 107008095 -14835761 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1401 300 53 0 0 chr11 107008194 107008232 -14835624 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 1401 417 212 204 0 chr11 107008249 107008362 -14835494 + B1_Mur2 SINE Alu 1 136 -13 5 1401 237 33 0 0 chr11 107008362 107008392 -14835464 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5 1401 542 215 21 62 chr11 107008395 107008517 -14835339 - B1_Mur1 SINE Alu -11 138 18 5 1401 1268 106 6 6 chr11 107008517 107008697 -14835159 + B2_Mm1a SINE B2 5 184 -9 5 1401 542 215 21 62 chr11 107008697 107008718 -14835138 - B1_Mur1 SINE Alu -132 17 1 5 1401 525 239 115 55 chr11 107008716 107008741 -14835115 - B4A SINE B4 -61 231 216 5 1401 2376 161 114 35 chr11 107008741 107009231 -14834625 + RMER16 LTR ERVK 5 533 0 6 1401 525 239 115 55 chr11 107009231 107009422 -14834434 - B4A SINE B4 -77 215 2 5 1401 180 0 0 0 chr11 107009428 107009448 -14834408 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1401 1099 88 0 20 chr11 107009448 107009598 -14834258 - B1_Mus2 SINE Alu 0 147 1 6 1401 503 137 137 0 chr11 107009606 107009701 -14834155 - PB1D9 SINE Alu -8 112 5 6 1401 341 314 14 42 chr11 107009727 107009870 -14833986 - ID_B1 SINE B4 0 224 86 6 1401 631 135 0 0 chr11 107010193 107010289 -14833567 - B1_Mus2 SINE Alu 0 147 52 6 1401 198 0 0 0 chr11 107010294 107010316 -14833540 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1401 442 200 39 56 chr11 107010610 107010841 -14833015 + (CA)n Simple_repeat Simple_repeat 1 227 0 6 1401 296 253 53 18 chr11 107010875 107011044 -14832812 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 1401 191 61 0 29 chr11 107011794 107011828 -14832028 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1401 1016 86 145 0 chr11 107011854 107012006 -14831850 + B2_Mm1t SINE B2 1 174 -19 6 1401 1312 95 39 0 chr11 107012006 107012185 -14831671 - B2_Mm2 SINE B2 -8 187 2 7 1401 484 172 0 0 chr11 107012187 107012274 -14831582 - PB1D9 SINE Alu 0 120 34 7 1401 203 189 19 0 chr11 107012335 107012388 -14831468 + T-rich Low_complexity Low_complexity 2 55 0 7 1401 668 158 67 15 chr11 107012392 107012527 -14831329 - B1_Mur4 SINE Alu 0 150 9 7 1401 843 140 0 27 chr11 107012607 107012790 -14831066 + CT-rich Low_complexity Low_complexity 2 179 0 7 1401 1211 41 0 0 chr11 107012792 107012939 -14830917 - B1_Mm SINE Alu 0 147 1 7 1401 1209 42 0 0 chr11 107012943 107013087 -14830769 - B1_Mus1 SINE Alu -3 145 2 7 1401 1086 43 58 0 chr11 107013479 107013617 -14830239 + B1_Mus2 SINE Alu 2 147 0 7 1401 1318 74 5 64 chr11 107013660 107013862 -14829994 + B2_Mm2 SINE B2 1 190 -5 7 1401 346 232 92 31 chr11 107014151 107014249 -14829607 - PB1 SINE Alu -7 120 17 7 1401 236 127 0 18 chr11 107014252 107014308 -14829548 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1401 207 0 0 0 chr11 107014377 107014400 -14829456 + (TTC)n Simple_repeat Simple_repeat 3 25 0 8 1401 324 0 0 0 chr11 107014400 107014435 -14829421 + (TAA)n Simple_repeat Simple_repeat 1 36 0 8 1401 1310 47 51 23 chr11 107014435 107014610 -14829246 - B2_Mm2 SINE B2 -15 180 1 8 1401 218 277 92 0 chr11 107014612 107014677 -14829179 - PB1D7 SINE Alu -44 76 6 8 1401 261 254 0 0 chr11 107014693 107014748 -14829108 - ID SINE ID -169 55 1 8 1401 331 206 93 93 chr11 107015469 107015576 -14828280 + B3A SINE B2 1 107 -91 8 1401 279 0 0 0 chr11 107015576 107015607 -14828249 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1401 378 232 61 40 chr11 107015635 107015734 -14828122 - Lx5 LINE L1 -227 6823 6723 8 1401 189 0 0 0 chr11 107016094 107016115 -14827741 + (TCCCG)n Simple_repeat Simple_repeat 2 22 0 8 1401 367 40 480 0 chr11 107016130 107016205 -14827651 - B1_Mus2 SINE Alu -20 127 17 9 1401 1401 60 32 27 chr11 107016269 107016457 -14827399 - B2_Mm1a SINE B2 -3 190 2 9 1401 249 77 0 0 chr11 107016459 107016498 -14827358 - B1_Mus2 SINE Alu -1 146 108 9 1401 3730 98 62 2 chr11 107016498 107017063 -14826793 + RMER19A LTR ERVK 139 737 0 9 1401 1542 58 16 0 chr11 107017275 107017465 -14826391 + B2_Mm1t SINE B2 1 193 0 9 1401 898 114 114 57 chr11 107017677 107017853 -14826003 + B2_Mm2 SINE B2 2 187 -8 9 1401 467 252 122 94 chr11 107018096 107018350 -14825506 - B4 SINE B4 -19 273 13 9 1401 408 59 14 29 chr11 107018628 107018698 -14825158 + (GGGAGA)n Simple_repeat Simple_repeat 3 71 0 9 1401 260 316 82 31 chr11 107019163 107019261 -14824595 + MIRc SINE MIR 62 164 -104 9 1401 1663 36 0 0 chr11 107019595 107019787 -14824069 - B2_Mm1a SINE B2 0 193 2 9 1401 25 0 0 0 chr11 107019852 107019877 -14823979 + AT_rich Low_complexity Low_complexity 1 25 0 1 1401 510 254 60 38 chr11 107019877 107020061 -14823795 - B4 SINE B4 -44 248 61 1 1401 402 136 0 0 chr11 107020117 107020198 -14823658 + (T)n Simple_repeat Simple_repeat 1 81 0 1 1401 1194 62 0 0 chr11 107020198 107020344 -14823512 - B1_Mm SINE Alu 0 147 2 1 1401 223 284 202 0 chr11 107020348 107020457 -14823399 - L2 LINE L2 -603 2816 2686 1 1401 601 284 13 0 chr11 107020496 107020651 -14823205 + B3A SINE B2 38 194 -4 1 1401 661 229 28 0 chr11 107020728 107020872 -14822984 - B3A SINE B2 -50 148 1 1 1401 448 304 95 26 chr11 107020873 107021062 -14822794 + Lx8 LINE L1 7070 7271 -202 1 1401 486 0 0 0 chr11 107021084 107021138 -14822718 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1401 273 125 0 0 chr11 107021138 107021193 -14822663 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1401 525 228 102 33 chr11 107021384 107021573 -14822283 + L1MB2 LINE L1 5957 6176 -7 1 1401 629 248 25 6 chr11 107021609 107021771 -14822085 + B3 SINE B2 1 165 -51 1 1401 539 66 13 0 chr11 107021772 107021848 -14822008 + (TTTTC)n Simple_repeat Simple_repeat 4 80 0 1 1401 955 88 44 0 chr11 107021870 107021998 -14821858 + B1_Mus1 SINE Alu 2 135 -13 1 1401 307 0 0 94 chr11 107021998 107022051 -14821805 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1401 199 130 18 18 chr11 107022119 107022174 -14821682 + (TGGG)n Simple_repeat Simple_repeat 1 55 0 1 1401 739 40 0 0 chr11 107022174 107022274 -14821582 - B1_Mus1 SINE Alu -42 106 7 1 1401 242 207 0 0 chr11 107022354 107022412 -14821444 + A-rich Low_complexity Low_complexity 3 60 0 1 1401 207 100 0 0 chr11 107022428 107022458 -14821398 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1401 1125 88 14 0 chr11 107022460 107022608 -14821248 - B1_Mur4 SINE Alu 0 150 1 1 1401 207 0 0 0 chr11 107022622 107022645 -14821211 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1401 1228 73 49 38 chr11 107022673 107022857 -14820999 + B2_Mm2 SINE B2 3 188 -7 1 1401 303 206 52 46 chr11 107022955 107023052 -14820804 - L1MB2 LINE L1 -11 6169 6057 1 1401 943 54 8 0 chr11 107023193 107023322 -14820534 + B1_Mus1 SINE Alu 19 148 0 1 1401 517 196 0 0 chr11 107023355 107023457 -14820399 - MTD LTR MaLR -109 310 209 1 1401 809 107 15 0 chr11 107023465 107023596 -14820260 - URR1B DNA MER1_type 0 225 93 1 1401 1270 73 90 0 chr11 107023597 107023774 -14820082 + B2_Mm2 SINE B2 1 193 -2 1 1401 376 85 17 0 chr11 107023774 107023833 -14820023 + B1_Mus2 SINE Alu 2 61 -86 1 1401 1222 103 23 0 chr11 107023860 107024034 -14819822 - B2_Mm2 SINE B2 -16 179 2 1 1401 751 148 27 40 chr11 107024088 107024236 -14819620 + B1_Mus1 SINE Alu 2 147 -1 1 1401 2583 72 0 0 chr11 107024276 107024609 -14819247 - L1Md_A LINE L1 0 6582 6250 1 1401 1727 21 0 0 chr11 107024624 107024817 -14819039 - B2_Mm1a SINE B2 0 193 1 1 1401 379 249 300 5 chr11 107024935 107025134 -14818722 + MTE2b LTR MaLR 61 318 -61 1 1401 232 287 37 65 chr11 107025136 107025174 -14818682 - PB1D7 SINE Alu -13 107 3 1 1401 298 229 14 0 chr11 107025174 107025244 -14818612 - ID_B1 SINE B4 -70 154 84 1 1401 1091 73 0 0 chr11 107025335 107025471 -14818385 - B1_Mus1 SINE Alu -12 136 1 1 1401 243 188 151 55 chr11 107025597 107025670 -14818186 - ID4 SINE ID -2 81 2 1 1401 395 289 27 0 chr11 107025695 107025817 -14818039 + PB1D10 SINE Alu 1 133 -16 1 1401 253 319 106 0 chr11 107026074 107026099 -14817757 - B4A SINE B4 -85 207 86 1 1401 321 235 59 0 chr11 107026099 107026184 -14817672 - B1F2 SINE Alu -59 90 1 1 1401 287 267 44 0 chr11 107026338 107026428 -14817428 + B3A SINE B2 3 96 -102 1 1401 354 115 340 19 chr11 107026495 107026601 -14817255 - B2_Mm2 SINE B2 -9 186 47 1 1401 1299 96 11 0 chr11 107026648 107026825 -14817031 - B2_Mm1t SINE B2 -14 179 1 1 1401 1037 104 21 0 chr11 107026849 107026993 -14816863 - B1_Mus1 SINE Alu 0 148 2 1 1401 1150 81 0 0 chr11 107027102 107027250 -14816606 + B1_Mus1 SINE Alu 1 148 0 1 1401 210 288 17 17 chr11 107027258 107027276 -14816580 - B1F2 SINE Alu -88 61 43 1 1401 724 154 17 0 chr11 107027276 107027393 -14816463 - PB1D9 SINE Alu 0 120 2 1 1401 256 219 0 0 chr11 107027393 107027434 -14816422 - B1_Mur4 SINE Alu -108 42 2 1 1401 1021 147 47 32 chr11 107027434 107027624 -14816232 - B2_Mm2 SINE B2 -2 193 1 1 1401 628 213 8 0 chr11 107027669 107027791 -14816065 - B1_Mur2 SINE Alu -9 140 18 1 1401 307 303 7 70 chr11 107027795 107027937 -14815919 - RSINE1 SINE B4 -31 134 2 1 1401 1300 125 16 0 chr11 107028237 107028429 -14815427 - B2_Mm2 SINE B2 0 195 1 1 1401 450 160 130 0 chr11 107028730 107028830 -14815026 + B1_Mur2 SINE Alu 1 113 -36 1 1401 380 114 138 12 chr11 107029121 107029201 -14814655 - B2_Mm2 SINE B2 -4 191 102 1 1401 525 178 0 0 chr11 107029297 107029387 -14814469 - B2_Mm2 SINE B2 -77 118 29 1 1401 21 0 0 0 chr11 107029723 107029744 -14814112 + AT_rich Low_complexity Low_complexity 1 21 0 1 1401 185 65 32 0 chr11 107029754 107029785 -14814071 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1401 1136 51 22 0 chr11 107029786 107029923 -14813933 - B1_Mm SINE Alu -6 141 2 1 1401 349 222 108 29 chr11 107029953 107030055 -14813801 - PB1D9 SINE Alu 0 120 11 1 1401 1248 41 0 0 chr11 107030347 107030494 -14813362 + B1_Mus1 SINE Alu 2 148 0 1 1401 242 346 83 28 chr11 107030975 107031192 -14812664 + Lx8 LINE L1 7243 7471 -2 1 1401 1207 48 0 0 chr11 107031645 107031791 -14812065 + B1_Mus2 SINE Alu 2 147 0 1 1401 240 35 0 0 chr11 107031791 107031820 -14812036 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1401 488 133 141 10 chr11 107031833 107031932 -14811924 - B1_Mus1 SINE Alu -1 147 36 1 1401 348 307 1 16 chr11 107032027 107032152 -14811704 - B1_Mur2 SINE Alu 0 120 4 1 1401 787 72 0 9 chr11 107033756 107033868 -14809988 - B1_Mus1 SINE Alu 0 148 38 1 1401 1381 81 16 16 chr11 107033975 107034163 -14809693 + B2_Mm2 SINE B2 1 188 -7 1 1401 705 24 0 0 chr11 107034233 107034316 -14809540 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1401 324 48 0 0 chr11 107034316 107034358 -14809498 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1401 461 239 84 10 chr11 107035115 107035261 -14808595 - B3 SINE B2 -11 205 33 1 1401 412 228 54 0 chr11 107035291 107035383 -14808473 - PB1D10 SINE Alu 0 117 21 1 1401 524 322 16 16 chr11 107035419 107035638 -14808218 + MTE-int LTR MaLR 143 382 -1198 1 1401 478 308 165 20 chr11 107035659 107035914 -14807942 + MTE-int LTR MaLR 542 833 -747 1 1401 339 293 39 48 chr11 107035954 107036058 -14807798 + MTE-int LTR MaLR 933 1035 -545 1 1401 269 232 60 24 chr11 107036179 107036263 -14807593 - B4A SINE B4 -3 289 203 1 1401 297 302 233 48 chr11 107036616 107036762 -14807094 - B4A SINE B4 -77 215 43 1 1401 186 43 0 0 chr11 107037120 107037143 -14806713 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1401 322 299 35 0 chr11 107037422 107037509 -14806347 + B3 SINE B2 1 90 -126 1 1401 411 219 10 40 chr11 107037567 107037667 -14806189 - RSINE1 SINE B4 -67 98 2 1 1401 892 132 7 40 chr11 107037708 107037858 -14805998 + B1_Mur4 SINE Alu 6 150 0 1 1401 236 169 37 49 chr11 107037858 107037904 -14805952 + (CAAAC)n Simple_repeat Simple_repeat 4 47 0 1 1401 1082 83 0 27 chr11 107037904 107038053 -14805803 + B1_Mus1 SINE Alu 2 146 -2 1 1401 236 169 37 49 chr11 107038053 107038087 -14805769 + (CAAAC)n Simple_repeat Simple_repeat 3 38 0 1 1401 21 0 0 0 chr11 107038291 107038312 -14805544 + AT_rich Low_complexity Low_complexity 1 21 0 1 1401 462 232 69 48 chr11 107038312 107038457 -14805399 - B1_Mur2 SINE Alu -1 148 1 1 1401 670 196 91 122 chr11 107038457 107038677 -14805179 - B3 SINE B2 -2 214 1 1 1401 568 171 125 0 chr11 107038689 107038841 -14805015 - B2_Mm2 SINE B2 0 195 25 1 1401 522 267 86 13 chr11 107038880 107039032 -14804824 - B3A SINE B2 -35 163 1 1 1401 22 56 0 0 chr11 107039037 107039073 -14804783 + AT_rich Low_complexity Low_complexity 1 36 0 1 1401 408 204 111 0 chr11 107039117 107039225 -14804631 - B1F SINE Alu -29 120 1 1 1401 255 325 56 24 chr11 107039225 107039243 -14804613 - ID_B1 SINE B4 -26 198 69 1 1401 534 247 102 11 chr11 107039367 107039543 -14804313 + B3A SINE B2 1 192 -6 1 1401 996 44 0 14 chr11 107039641 107039779 -14804077 + B1_Mus2 SINE Alu 12 147 0 1 1401 787 178 14 7 chr11 107040080 107040227 -14803629 + B1_Mus1 SINE Alu 1 148 0 1 1401 997 62 70 0 chr11 107040587 107040715 -14803141 + B1_Mus2 SINE Alu 1 137 -10 1 1401 1130 88 0 0 chr11 107040758 107040905 -14802951 + B1_Mus2 SINE Alu 1 147 0 1 1401 459 185 113 6 chr11 107040922 107041045 -14802811 - L1MA4A LINE L1 -458 5845 5704 1 1401 414 294 0 29 chr11 107041170 107041275 -14802581 + PB1D10 SINE Alu 11 112 -5 1 1401 333 244 173 64 chr11 107041598 107041801 -14802055 + L1M4 LINE L1 3450 3680 -2466 1 1401 289 228 32 11 chr11 107041852 107041945 -14801911 + L1M4 LINE L1 4266 4360 -1780 1 1401 478 252 10 0 chr11 107042064 107042163 -14801693 + PB1D10 SINE Alu 3 102 -15 1 1401 23 33 0 0 chr11 107042586 107042616 -14801240 + AT_rich Low_complexity Low_complexity 1 30 0 1 1401 291 270 101 0 chr11 107042644 107042733 -14801123 + RSINE1 SINE B4 64 161 -4 1 1401 341 294 0 12 chr11 107042775 107042861 -14800995 + ID SINE ID 5 89 -135 1 1401 1315 82 23 0 chr11 107043264 107043435 -14800421 + B2_Mm2 SINE B2 2 176 -19 1 1401 285 269 0 29 chr11 107043476 107043487 -14800369 + B4A SINE B4 78 86 -206 2 1401 472 259 26 0 chr11 107043487 107043603 -14800253 + B1F2 SINE Alu 2 120 -29 2 1401 362 305 0 0 chr11 107043656 107043751 -14800105 - PB1D10 SINE Alu -6 111 17 2 1401 1199 34 0 20 chr11 107044361 107044510 -14799346 - B1_Mus1 SINE Alu 0 148 3 2 1401 358 247 27 0 chr11 107045779 107045852 -14798004 - B1_Mur1 SINE Alu -39 110 36 2 1401 243 253 53 0 chr11 107045890 107045965 -14797891 - ID4_ SINE ID 0 83 5 2 1401 563 162 10 0 chr11 107046475 107046574 -14797282 + B1_Mur2 SINE Alu 48 147 -2 2 1401 811 146 0 0 chr11 107046996 107047126 -14796730 - B3 SINE B2 -86 130 1 2 1401 736 176 8 0 chr11 107047177 107047302 -14796554 - B1_Mur1 SINE Alu -11 138 13 2 1401 440 276 146 47 chr11 107047378 107047549 -14796307 - B3A SINE B2 -3 195 8 2 1401 1205 61 0 7 chr11 107047549 107047698 -14796158 + B1_Mus1 SINE Alu 1 148 0 2 1401 275 286 0 0 chr11 107048422 107048485 -14795371 - PB1D10 SINE Alu -20 97 35 2 1401 597 293 12 43 chr11 107048512 107048676 -14795180 - RSINE1 SINE B4 -4 161 3 2 1401 229 191 129 29 chr11 107048694 107048764 -14795092 + L1MB4 LINE L1 6050 6126 -54 2 1401 500 187 102 72 chr11 107048799 107048979 -14794877 + B1_Mus1 SINE Alu 1 147 -2 2 1401 1390 79 26 16 chr11 107049110 107049302 -14794554 + B2_Mm2 SINE B2 1 194 -1 2 1401 472 143 132 0 chr11 107049580 107049671 -14794185 - B3 SINE B2 -86 130 28 2 1401 490 112 355 0 chr11 107049730 107049837 -14794019 + B1_Mur4 SINE Alu 6 150 0 2 1401 22 35 0 0 chr11 107050860 107050889 -14792967 + AT_rich Low_complexity Low_complexity 1 29 0 2 1401 682 197 16 0 chr11 107051137 107051264 -14792592 + B1_Mur1 SINE Alu 1 129 -20 2 1401 1120 149 21 0 chr11 107051270 107051458 -14792398 - B2_Mm1t SINE B2 -1 192 1 2 1401 804 88 0 0 chr11 107051507 107051621 -14792235 - B1_Mus1 SINE Alu 0 148 35 2 1401 337 210 174 98 chr11 107051512 107051644 -14792212 - B4 SINE B4 -71 221 80 2 1401 1110 80 0 24 chr11 107051640 107051807 -14792049 - B2_Mm2 SINE B2 -31 164 2 2 1401 194 0 0 37 chr11 107052272 107052299 -14791557 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 2 1401 702 194 7 0 chr11 107053701 107053840 -14790016 + B1_Mur4 SINE Alu 6 145 -5 2 1401 1043 220 5 0 chr11 107053856 107054070 -14789786 - B3 SINE B2 0 216 2 2 1401 1003 76 6 88 chr11 107054426 107054585 -14789271 - B1_Mus2 SINE Alu 0 147 2 2 1401 445 180 98 123 chr11 107054596 107054679 -14789177 - L1MB3 LINE L1 -9 6174 6101 2 1401 1418 45 62 0 chr11 107054679 107054856 -14789000 - B2_Mm1t SINE B2 -5 188 1 2 1401 445 180 98 123 chr11 107054856 107054910 -14788946 - L1MB3 LINE L1 -83 6100 6049 2 1401 273 57 0 0 chr11 107054910 107054945 -14788911 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1401 1169 69 0 0 chr11 107054945 107055089 -14788767 - B1_Mm SINE Alu -2 145 2 2 1401 445 180 98 123 chr11 107055089 107055184 -14788672 - L1MB3 LINE L1 -135 6048 5947 2 1401 907 188 70 33 chr11 107055293 107055747 -14788109 + RMER17C LTR ERVK 1 394 -16 2 1401 1011 56 0 0 chr11 107056216 107056341 -14787515 + B1_Mus2 SINE Alu 2 126 -21 2 1401 549 100 0 0 chr11 107057153 107057223 -14786633 + Lx LINE L1 6180 6249 -405 2 1401 309 141 42 0 chr11 107057276 107057347 -14786509 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1401 249 186 217 17 chr11 107057670 107057730 -14786126 + RSINE1 SINE B4 16 87 -78 2 1401 481 221 9 9 chr11 107057845 107057959 -14785897 - B1_Mur1 SINE Alu -35 114 1 2 1401 189 0 0 0 chr11 107058244 107058265 -14785591 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 2 1401 770 58 0 9 chr11 107058382 107058487 -14785369 + (TTTCC)n Simple_repeat Simple_repeat 3 106 0 2 1401 999 17 0 0 chr11 107058487 107058606 -14785250 - B1_Mus2 SINE Alu -2 145 27 2 1401 443 209 125 86 chr11 107058490 107058642 -14785214 - B4 SINE B4 -71 221 64 2 1401 1094 49 157 12 chr11 107058668 107058834 -14785022 - B2_Mm2 SINE B2 -4 191 2 2 1401 2526 56 3 6 chr11 107058845 107059170 -14784686 - L1Md_F2 LINE L1 0 6582 6259 2 1401 596 219 0 16 chr11 107059172 107059293 -14784563 - PB1D9 SINE Alu -1 119 1 2 1401 192 77 0 0 chr11 107059318 107059344 -14784512 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1401 932 169 0 7 chr11 107059344 107059486 -14784370 - B1_Mur4 SINE Alu -8 142 1 2 1401 1133 95 0 0 chr11 107059512 107059659 -14784197 + B1_Mus2 SINE Alu 1 147 0 2 1401 967 196 40 42 chr11 107059714 107060860 -14782996 - SYNREP_MM Satellite Satellite 0 1143 1 2 1401 195 129 0 0 chr11 107060864 107060895 -14782961 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1401 320 174 4 97 chr11 107060970 107061056 -14782800 - B2_Mm2 SINE B2 -135 81 1 2 1401 397 278 34 20 chr11 107061102 107061249 -14782607 + B1F SINE Alu 1 149 0 2 1401 967 144 59 2 chr11 107061483 107061657 -14782199 + B2_Mm1t SINE B2 5 184 -9 2 1401 1002 118 0 0 chr11 107061709 107061845 -14782011 - B1_Mur4 SINE Alu -6 144 9 2 1401 240 262 0 36 chr11 107061791 107061874 -14781982 + YREP_Mm Unknown Unknown 256 335 -1477 2 1401 4250 50 14 0 chr11 107061876 107062381 -14781475 + RLTR1B LTR ERV1 1 512 0 2 1401 1326 154 9 27 chr11 107062382 107062602 -14781254 - B3 SINE B2 0 216 1 2 1401 618 256 29 14 chr11 107062620 107062759 -14781097 + B3 SINE B2 67 207 -9 2 1401 23 0 0 0 chr11 107062764 107062787 -14781069 + AT_rich Low_complexity Low_complexity 1 23 0 2 1401 404 318 44 69 chr11 107062787 107062990 -14780866 + B3A SINE B2 1 198 0 2 1401 23 0 0 0 chr11 107063037 107063060 -14780796 + AT_rich Low_complexity Low_complexity 1 23 0 2 1401 661 258 22 33 chr11 107063750 107063934 -14779922 + ID_B1 SINE B4 2 183 -41 2 1401 778 104 85 39 chr11 107064219 107064349 -14779507 + B1_Mur3 SINE Alu 1 136 -13 2 1401 497 309 12 6 chr11 107064387 107064550 -14779306 - RSINE1 SINE B4 0 165 2 2 1401 769 218 13 98 chr11 107064711 107064935 -14778921 - B3 SINE B2 -11 205 1 2 1401 1660 160 93 90 chr11 107064954 107065106 -14778750 + ORR1C1 LTR MaLR 1 166 -212 2 1401 351 0 0 0 chr11 107065106 107065145 -14778711 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1401 1660 160 93 90 chr11 107065145 107065304 -14778552 + ORR1C1 LTR MaLR 167 322 -56 2 1401 1239 54 0 0 chr11 107065304 107065451 -14778405 + B1_Mus1 SINE Alu 1 147 -1 2 1401 1660 160 93 90 chr11 107065451 107065515 -14778341 + ORR1C1 LTR MaLR 323 377 -1 2 1401 602 268 7 27 chr11 107065515 107065651 -14778205 - ID_B1 SINE B4 -86 138 5 2 1401 332 105 0 34 chr11 107065665 107065724 -14778132 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 2 1401 735 275 51 10 chr11 107065803 107065997 -14777859 + MTD LTR MaLR 9 210 -209 2 1401 646 140 0 3 chr11 107065997 107066107 -14777749 + B3A SINE B2 1 107 -109 2 1401 225 0 0 0 chr11 107066163 107066188 -14777668 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1401 1364 151 351 32 chr11 107066189 107066559 -14777297 + RLTR25B LTR ERVK 541 1028 0 2 1401 425 164 41 0 chr11 107066560 107066633 -14777223 + MTD LTR MaLR 305 380 -39 2 1401 1822 169 101 84 chr11 107066634 107066820 -14777036 + MTC LTR MaLR 1 210 -211 2 1401 1161 62 118 0 chr11 107066820 107066981 -14776875 + B2_Mm2 SINE B2 2 181 -14 2 1401 1822 169 101 84 chr11 107066981 107067200 -14776656 + MTC LTR MaLR 211 413 -8 2 1401 216 122 0 0 chr11 107067943 107067984 -14775872 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 2 1401 315 0 0 0 chr11 107067985 107068020 -14775836 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1401 456 349 7 0 chr11 107068021 107068170 -14775686 - RSINE1 SINE B4 -13 152 3 2 1401 884 69 99 2 chr11 107068189 107068329 -14775527 + ORR1A2 LTR MaLR 3 138 -189 2 1401 375 276 11 0 chr11 107068330 107068417 -14775439 + ID_B1 SINE B4 95 182 -42 2 1401 307 298 67 50 chr11 107068417 107068450 -14775406 + B1F1 SINE Alu 14 135 -14 2 1401 1088 49 35 14 chr11 107068461 107068605 -14775251 - B1_Mus2 SINE Alu 0 147 1 2 1401 1471 63 11 0 chr11 107068647 107068837 -14775019 - B2_Mm1a SINE B2 0 193 2 2 1401 26 0 0 0 chr11 107069849 107069875 -14773981 + AT_rich Low_complexity Low_complexity 1 26 0 2 1401 195 100 0 0 chr11 107070200 107070230 -14773626 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1401 362 247 12 0 chr11 107072259 107072340 -14771516 - ID4 SINE ID -1 82 1 2 1401 204 40 0 0 chr11 107072987 107073012 -14770844 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1401 587 143 0 0 chr11 107073216 107073307 -14770549 - ID_B1 SINE B4 -4 220 130 2 1401 429 204 76 50 chr11 107073307 107073325 -14770531 - B1F SINE Alu 0 111 28 2 1401 195 170 0 0 chr11 107073391 107073438 -14770418 + T-rich Low_complexity Low_complexity 1 47 0 2 1401 22 0 0 0 chr11 107073589 107073611 -14770245 + AT_rich Low_complexity Low_complexity 1 22 0 2 1401 297 270 0 39 chr11 107074305 107074382 -14769474 - RSINE1 SINE B4 -88 77 4 2 1401 288 200 21 10 chr11 107074406 107074502 -14769354 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1401 393 219 0 0 chr11 107074627 107074700 -14769156 - ID4 SINE ID -1 82 10 2 1401 382 221 62 54 chr11 107074755 107074884 -14768972 - B1_Mus1 SINE Alu -18 130 1 2 1401 207 0 0 0 chr11 107074887 107074910 -14768946 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1401 189 0 0 0 chr11 107075278 107075299 -14768557 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1401 752 222 129 15 chr11 107075527 107075728 -14768128 - ID_B1 SINE B4 0 224 1 2 1401 24 53 0 0 chr11 107075738 107075776 -14768080 + AT_rich Low_complexity Low_complexity 1 38 0 2 1401 380 307 0 38 chr11 107075802 107075907 -14767949 - RSINE1 SINE B4 -61 104 4 3 1401 311 141 7 7 chr11 107076261 107076320 -14767536 - B1F SINE Alu -44 103 45 3 1401 270 0 0 0 chr11 107076706 107076736 -14767120 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1401 652 243 69 63 chr11 107076849 107077038 -14766818 - B3A SINE B2 0 198 9 3 1401 182 91 30 0 chr11 107077063 107077096 -14766760 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1401 388 237 132 85 chr11 107078798 107078987 -14764869 + MER20 DNA MER1_type 22 219 0 3 1401 409 256 67 0 chr11 107078989 107079079 -14764777 + PB1D7 SINE Alu 17 112 -8 3 1401 261 57 0 0 chr11 107079082 107079117 -14764739 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1401 21 0 0 0 chr11 107079432 107079453 -14764403 + AT_rich Low_complexity Low_complexity 1 21 0 3 1401 397 194 46 55 chr11 107080254 107080363 -14763493 - ID_B1 SINE B4 -5 219 112 3 1401 618 191 53 106 chr11 107080755 107080925 -14762931 - RSINE1 SINE B4 0 165 5 3 1401 948 208 46 0 chr11 107081126 107081323 -14762533 - B3 SINE B2 -10 206 1 3 1401 524 94 243 9 chr11 107081323 107081430 -14762426 - B4A SINE B4 -62 230 99 3 1401 516 220 28 0 chr11 107081636 107081745 -14762111 - PB1D10 SINE Alu -3 114 3 3 1401 604 257 134 16 chr11 107081768 107081962 -14761894 - ID_B1 SINE B4 -7 217 1 3 1401 585 243 28 21 chr11 107081980 107082123 -14761733 - B1_Mur3 SINE Alu -5 144 1 3 1401 652 283 40 11 chr11 107082182 107082357 -14761499 - B3A SINE B2 -18 180 1 3 1401 543 320 13 0 chr11 107082439 107082589 -14761267 + RSINE1 SINE B4 8 159 -6 3 1401 342 0 0 0 chr11 107082691 107082729 -14761127 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1401 504 0 0 0 chr11 107082729 107082785 -14761071 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1401 782 233 0 7 chr11 107083037 107083184 -14760672 - B1F SINE Alu -1 148 3 3 1401 1046 241 0 9 chr11 107083383 107083601 -14760255 - B3 SINE B2 0 216 1 3 1401 436 293 114 0 chr11 107083603 107083726 -14760130 - B1F1 SINE Alu -8 141 5 3 1401 262 264 13 65 chr11 107083783 107083860 -14759996 - Charlie4z DNA MER1_type -19 148 76 3 1401 298 278 56 0 chr11 107084925 107085015 -14758841 - MER5A DNA MER1_type -91 98 4 3 1402 682 262 0 52 chr11 107085905 107086078 -14757778 - RSINE1 SINE B4 0 165 2 3 1402 219 36 0 0 chr11 107087027 107087055 -14756801 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1402 788 270 72 27 chr11 107087671 107087888 -14755968 + B4A SINE B4 1 227 -65 3 1402 413 238 44 67 chr11 107087888 107088023 -14755833 + RSINE1 SINE B4 2 133 -32 3 1402 180 0 0 0 chr11 107088208 107088228 -14755628 + (CAT)n Simple_repeat Simple_repeat 2 21 0 3 1402 25 31 0 0 chr11 107088271 107088303 -14755553 + AT_rich Low_complexity Low_complexity 1 32 0 3 1402 1212 48 0 13 chr11 107088307 107088456 -14755400 - B1_Mm SINE Alu 0 147 1 3 1402 708 245 100 20 chr11 107088477 107088677 -14755179 - B3 SINE B2 0 216 1 3 1402 2642 77 0 3 chr11 107088732 107089059 -14754797 + ORR1A2 LTR MaLR 2 327 0 3 1402 2025 174 42 3 chr11 107089257 107089615 -14754241 + ORR1D1 LTR MaLR 3 374 0 3 1402 459 280 76 0 chr11 107089852 107089970 -14753886 + RSINE1 SINE B4 3 129 -36 3 1402 898 96 36 15 chr11 107090098 107090235 -14753621 + B1_Mur4 SINE Alu 2 141 -9 3 1402 238 194 15 15 chr11 107090243 107090311 -14753545 + GA-rich Low_complexity Low_complexity 3 70 0 3 1402 303 343 39 121 chr11 107090418 107090624 -14753232 - B4A SINE B4 -8 284 96 3 1402 1090 95 7 0 chr11 107090826 107090973 -14752883 - B1_Mus1 SINE Alu 0 148 1 3 1402 705 190 93 129 chr11 107090998 107091300 -14752556 - B4A SINE B4 0 292 2 3 1402 500 190 231 0 chr11 107092085 107092206 -14751650 + B1F1 SINE Alu 1 149 0 3 1402 906 218 35 10 chr11 107092209 107092408 -14751448 + B3 SINE B2 1 204 -12 3 1402 233 297 0 13 chr11 107092434 107092509 -14751347 + GA-rich Low_complexity Low_complexity 5 78 0 3 1402 926 285 57 103 chr11 107092600 107092721 -14751135 + MTE2a LTR MaLR 1 119 -300 3 1402 759 238 0 0 chr11 107092721 107092868 -14750988 - B1_Mur1 SINE Alu 0 149 3 3 1402 1239 238 42 52 chr11 107092868 107093175 -14750681 + MTE2a LTR MaLR 76 418 -1 3 1402 1663 105 188 21 chr11 107093194 107093476 -14750380 + ORR1A4 LTR MaLR 1 329 0 3 1402 316 257 88 30 chr11 107093672 107093786 -14750070 + PB1D10 SINE Alu 3 127 0 3 1402 1540 68 0 0 chr11 107093989 107094180 -14749676 - B2_Mm1t SINE B2 -2 191 1 3 1402 684 140 19 9 chr11 107094217 107094325 -14749531 - PB1D9 SINE Alu -11 109 1 3 1402 779 260 23 9 chr11 107094327 107094351 -14749505 - ID_B1 SINE B4 0 224 202 3 1402 450 0 0 0 chr11 107094351 107094401 -14749455 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 3 1402 779 260 23 9 chr11 107094401 107094597 -14749259 - ID_B1 SINE B4 -23 201 1 3 1402 989 129 7 7 chr11 107094659 107094807 -14749049 - B1_Mus1 SINE Alu 0 148 1 3 1402 437 242 107 57 chr11 107094837 107094977 -14748879 - RSINE1 SINE B4 -4 161 15 3 1402 605 228 37 92 chr11 107095849 107096013 -14747843 + ID_B1 SINE B4 70 224 0 3 1402 453 196 48 29 chr11 107096014 107096119 -14747737 + L1MB7 LINE L1 5917 6023 -161 3 1402 991 115 82 13 chr11 107096128 107096286 -14747570 + B2_Mm2 SINE B2 1 169 -26 3 1402 252 268 84 12 chr11 107096325 107096408 -14747448 + B4A SINE B4 1 89 -203 3 1402 873 144 234 0 chr11 107096414 107096581 -14747275 + B3 SINE B2 1 206 -10 3 1402 260 218 17 83 chr11 107096601 107096661 -14747195 + B4A SINE B4 82 137 -155 3 1402 262 228 58 81 chr11 107096716 107096802 -14747054 + RSINE1 SINE B4 82 165 0 3 1402 279 206 62 16 chr11 107096875 107096939 -14746917 + RMER5 LTR ERV1 434 500 -34 3 1402 497 231 19 0 chr11 107097545 107097649 -14746207 - RSINE1 SINE B4 -29 136 31 3 1402 183 246 0 0 chr11 107098083 107098140 -14745716 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1402 552 258 125 0 chr11 107098180 107098308 -14745548 - RSINE1 SINE B4 -18 147 4 3 1402 670 180 81 16 chr11 107098357 107098481 -14745375 - B1_Mus1 SINE Alu -11 137 6 3 1402 313 269 8 122 chr11 107098372 107098495 -14745361 - MT2B LTR ERVL -338 263 155 3 1402 1334 96 0 26 chr11 107098498 107098691 -14745165 - B2_Mm2 SINE B2 -6 189 2 3 1402 432 0 0 0 chr11 107098757 107098805 -14745051 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 3 1402 363 288 0 0 chr11 107098808 107098888 -14744968 - PB1D7 SINE Alu -13 107 28 3 1402 660 257 53 53 chr11 107098920 107099146 -14744710 + MLT1D LTR MaLR 18 243 -262 3 1402 1175 160 87 0 chr11 107099205 107099411 -14744445 + URR1B DNA MER1_type 2 225 0 3 1402 694 247 112 24 chr11 107099948 107100197 -14743659 + RMER15 LTR ERVL 285 555 -20 3 1402 334 336 78 0 chr11 107100197 107100313 -14743543 + MLT1D LTR MaLR 241 365 0 3 1402 668 188 97 8 chr11 107100759 107100893 -14742963 - B1_Mur2 SINE Alu -2 147 2 3 1402 382 239 198 93 chr11 107101273 107101541 -14742315 - MLT1C LTR MaLR -40 427 132 3 1402 552 181 9 28 chr11 107101636 107101744 -14742112 - B1_Mur4 SINE Alu -10 140 35 3 1402 248 258 92 99 chr11 107101642 107101784 -14742072 - MT2B LTR ERVL -318 283 143 3 1402 556 284 165 36 chr11 107101820 107102123 -14741733 - ORR1E LTR MaLR -11 348 7 3 1402 1172 260 126 18 chr11 107103009 107103342 -14740514 + MTE2b LTR MaLR 2 370 -9 3 1402 458 224 0 0 chr11 107103374 107103459 -14740397 - PB1D10 SINE Alu -7 110 26 3 1402 333 0 0 0 chr11 107103741 107103778 -14740078 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1402 742 264 0 7 chr11 107103782 107103923 -14739933 - RSINE1 SINE B4 -21 144 5 3 1402 241 233 0 0 chr11 107104940 107104983 -14738873 + MTEb LTR MaLR 327 369 -10 3 1402 397 286 67 13 chr11 107105135 107105284 -14738572 + MLT1A1 LTR MaLR 248 404 -4 3 1402 339 215 38 0 chr11 107105716 107105795 -14738061 - B3 SINE B2 -134 82 1 3 1402 807 237 181 115 chr11 107105796 107106144 -14737712 + MTE2a LTR MaLR 9 379 0 3 1402 181 364 0 29 chr11 107106144 107106212 -14737644 - MIRb SINE MIR -23 245 180 3 1402 320 283 123 70 chr11 107106415 107106529 -14737327 - B4A SINE B4 0 292 173 3 1402 235 273 146 95 chr11 107106626 107106637 -14737219 + B2_Mm1a SINE B2 6 43 -150 3 1402 680 226 0 0 chr11 107106637 107106752 -14737104 + RSINE1 SINE B4 13 127 -38 3 1402 235 273 146 95 chr11 107106752 107106784 -14737072 + B2_Mm1a SINE B2 44 171 -22 3 1402 246 338 13 0 chr11 107106943 107107020 -14736836 + B1F SINE Alu 5 82 -67 3 1402 745 242 31 43 chr11 107107058 107107282 -14736574 + B3A SINE B2 1 195 0 3 1402 320 203 15 15 chr11 107107506 107107571 -14736285 - ID_B1 SINE B4 -1 223 159 3 1402 259 219 62 15 chr11 107107513 107107578 -14736278 - B1F SINE Alu -8 141 74 3 1402 450 0 0 0 chr11 107107722 107107772 -14736084 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 3 1402 203 268 0 35 chr11 107107873 107107931 -14735925 + CT-rich Low_complexity Low_complexity 2 57 0 3 1402 387 0 0 0 chr11 107108840 107108883 -14734973 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1402 231 304 0 0 chr11 107108920 107108976 -14734880 - B3A SINE B2 -128 70 15 3 1402 1274 34 0 0 chr11 107109089 107109236 -14734620 + B1_Mus2 SINE Alu 1 147 0 3 1402 246 32 0 0 chr11 107109238 107109269 -14734587 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1402 850 241 29 10 chr11 107109332 107109537 -14734319 + B3 SINE B2 2 210 -6 3 1402 280 148 33 0 chr11 107109618 107109679 -14734177 + CT-rich Low_complexity Low_complexity 2 64 0 4 1402 660 170 9 0 chr11 107109681 107109793 -14734063 - PB1D9 SINE Alu -6 114 2 4 1402 510 275 153 28 chr11 107110658 107110834 -14733022 + B3A SINE B2 1 198 0 4 1402 33 0 0 42 chr11 107111790 107111809 -14732047 + AT_rich Low_complexity Low_complexity 1 18 0 4 1402 1176 71 0 0 chr11 107111809 107111950 -14731906 + B1_Mus2 SINE Alu 1 141 -6 4 1402 33 0 0 42 chr11 107111950 107111978 -14731878 + AT_rich Low_complexity Low_complexity 1 28 0 4 1402 378 0 0 0 chr11 107112000 107112042 -14731814 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1402 634 229 28 14 chr11 107112053 107112195 -14731661 - RSINE1 SINE B4 -19 146 3 4 1402 829 251 28 6 chr11 107112849 107113029 -14730827 + B3 SINE B2 2 185 -31 4 1402 1059 90 0 0 chr11 107113041 107113175 -14730681 - B1_Mus1 SINE Alu -13 135 2 4 1402 23 68 0 0 chr11 107113841 107113885 -14729971 + AT_rich Low_complexity Low_complexity 1 44 0 4 1402 1092 42 12 32 chr11 107113894 107114140 -14729716 + (TG)n Simple_repeat Simple_repeat 1 241 0 4 1402 689 225 29 7 chr11 107114142 107114281 -14729575 - RSINE1 SINE B4 -22 143 2 4 1402 604 209 0 0 chr11 107114405 107114515 -14729341 - PB1D9 SINE Alu -2 118 9 4 1402 323 259 196 22 chr11 107114515 107114541 -14729315 - B4 SINE B4 -66 224 65 4 1402 278 235 85 75 chr11 107114523 107114629 -14729227 - PB1 SINE Alu 0 127 21 4 1402 562 303 13 19 chr11 107114566 107114724 -14729132 - ID_B1 SINE B4 -60 164 8 4 1402 589 208 136 19 chr11 107115189 107115351 -14728505 - B4A SINE B4 -48 244 64 4 1402 252 0 0 0 chr11 107115887 107115915 -14727941 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1402 551 257 87 41 chr11 107116039 107116234 -14727622 - B4A SINE B4 -83 209 6 4 1402 1018 235 18 23 chr11 107116243 107116461 -14727395 - B4A SINE B4 -65 227 11 4 1402 1555 306 104 33 chr11 107116499 107116944 -14726912 + LTR41B LTR ERVL 37 526 -232 4 1402 444 19 0 0 chr11 107116944 107116997 -14726859 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1402 1555 306 104 33 chr11 107116997 107117224 -14726632 + LTR41B LTR ERVL 527 756 -2 4 1402 239 280 63 36 chr11 107117404 107117515 -14726341 - MIRc SINE MIR -110 158 45 4 1402 315 0 0 0 chr11 107118078 107118113 -14725743 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1402 207 0 0 0 chr11 107118455 107118478 -14725378 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1402 405 0 0 0 chr11 107118584 107118629 -14725227 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1402 296 171 48 12 chr11 107118708 107118791 -14725065 + L1MC2 LINE L1 6258 6343 -1 4 1402 1087 281 19 87 chr11 107119190 107119556 -14724300 - MTE2a LTR MaLR 0 379 39 4 1402 729 200 67 0 chr11 107119854 107119989 -14723867 - B1_Mur4 SINE Alu -1 149 6 4 1402 3544 102 10 4 chr11 107120026 107120537 -14723319 - Lx4A LINE L1 -107 6951 6438 4 1402 342 268 148 53 chr11 107121357 107121546 -14722310 - ID_B1 SINE B4 -16 208 2 4 1402 220 259 37 0 chr11 107121681 107121735 -14722121 - ID4 SINE ID -23 60 5 4 1402 235 252 84 32 chr11 107121740 107121889 -14721967 - L1MA4 LINE L1 0 6300 6145 4 1402 547 261 29 27 chr11 107122629 107122776 -14721080 - B3 SINE B2 -18 177 33 4 1402 1716 60 9 0 chr11 107122776 107122992 -14720864 - ORR1A0 LTR MaLR 0 346 129 4 1402 269 306 39 39 chr11 107123224 107123326 -14720530 - PB1D10 SINE Alu -13 104 3 4 1402 612 89 0 0 chr11 107123455 107123556 -14720300 + (TC)n Simple_repeat Simple_repeat 1 101 0 4 1402 690 206 68 0 chr11 107123685 107123831 -14720025 + ID_B1 SINE B4 69 224 0 4 1402 212 239 225 0 chr11 107124087 107124158 -14719698 - B3A SINE B2 -110 88 2 4 1402 406 297 129 75 chr11 107124732 107125103 -14718753 + MLT1C LTR MaLR 71 461 -6 4 1402 494 16 16 0 chr11 107125696 107125759 -14718097 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1402 1286 49 61 0 chr11 107126983 107127147 -14716709 + B2_Mm1a SINE B2 2 175 -18 4 1402 301 85 0 0 chr11 107127155 107127214 -14716642 + B2_Mm1t SINE B2 135 193 0 4 1402 386 69 17 0 chr11 107127500 107127558 -14716298 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1402 281 316 15 0 chr11 107127563 107127637 -14716219 - ID4 SINE ID -69 83 9 4 1402 843 115 0 0 chr11 107128056 107128186 -14715670 + (TCCA)n Simple_repeat Simple_repeat 1 130 0 4 1402 783 251 32 16 chr11 107128972 107129162 -14714694 - B3A SINE B2 -4 194 2 4 1402 959 118 0 0 chr11 107129559 107129694 -14714162 - B1_Mus1 SINE Alu -6 142 8 4 1402 213 39 0 0 chr11 107129725 107129751 -14714105 + (CAA)n Simple_repeat Simple_repeat 1 26 0 4 1402 300 83 0 0 chr11 107129784 107129832 -14714024 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1402 198 0 0 0 chr11 107129883 107129905 -14713951 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 4 1402 626 304 0 25 chr11 107129907 107130069 -14713787 - RSINE1 SINE B4 -5 160 3 4 1402 313 288 27 91 chr11 107130087 107130274 -14713582 - Charlie22a DNA MER1_type -224 267 93 4 1402 784 296 30 10 chr11 107130779 107130977 -14712879 - ID_B1 SINE B4 -21 203 2 4 1402 296 311 0 0 chr11 107131012 107131086 -14712770 - PB1 SINE Alu -17 110 37 4 1402 205 182 0 0 chr11 107131310 107131354 -14712502 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4 1402 539 285 14 7 chr11 107131616 107131754 -14712102 + ID_B1 SINE B4 86 224 0 4 1402 633 275 4 79 chr11 107131760 107131828 -14712028 + L1MC4 LINE L1 7711 7777 -265 4 1402 243 0 0 0 chr11 107131828 107131855 -14712001 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1402 1178 51 0 0 chr11 107131855 107131992 -14711864 - B1_Mus1 SINE Alu -10 138 2 4 1402 633 275 4 79 chr11 107131992 107132151 -14711705 + L1MC4 LINE L1 7778 7921 -121 4 1402 557 262 128 20 chr11 107132492 107132674 -14711182 + B4A SINE B4 2 204 -88 4 1402 577 125 362 14 chr11 107132674 107132805 -14711051 + URR1A DNA MER1_type 1 179 -47 4 1402 893 228 37 16 chr11 107132805 107132992 -14710864 + B3 SINE B2 1 191 -25 4 1402 225 0 0 0 chr11 107132998 107133023 -14710833 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4 1402 241 333 122 100 chr11 107133023 107133068 -14710788 + B4A SINE B4 212 256 -36 4 1402 1439 60 27 6 chr11 107133068 107133251 -14710605 + B2_Mm2 SINE B2 4 190 -5 4 1402 241 333 122 100 chr11 107133251 107133281 -14710575 + B4A SINE B4 257 276 -16 4 1402 309 26 0 0 chr11 107133309 107133347 -14710509 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1402 852 216 103 0 chr11 107134079 107134273 -14709583 + ID_B1 SINE B4 2 215 -9 4 1402 776 219 0 21 chr11 107134285 107134425 -14709431 + RSINE1 SINE B4 3 139 -26 4 1402 435 141 0 0 chr11 107134450 107134528 -14709328 + (CCAA)n Simple_repeat Simple_repeat 2 79 0 4 1402 329 254 14 0 chr11 107134552 107134623 -14709233 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 4 1402 692 96 11 0 chr11 107134705 107134799 -14709057 - B2_Mm2 SINE B2 -98 97 3 4 1402 207 256 0 0 chr11 107134993 107135032 -14708824 + MIR SINE MIR 61 99 -163 4 1402 516 93 0 0 chr11 107135032 107135107 -14708749 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 1402 285 387 0 0 chr11 107135152 107135263 -14708593 - RMER12 LTR ERVK -471 851 741 4 1402 228 100 0 0 chr11 107136283 107136323 -14707533 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1402 252 0 0 0 chr11 107136323 107136350 -14707506 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1402 237 288 156 23 chr11 107138113 107138241 -14705615 + RMER15 LTR ERVL 380 524 -51 4 1402 301 250 13 26 chr11 107138993 107139071 -14704785 + ID SINE ID 1 77 -147 4 1402 273 57 0 0 chr11 107139167 107139202 -14704654 + (TATG)n Simple_repeat Simple_repeat 3 37 0 4 1402 956 186 18 73 chr11 107139204 107139424 -14704432 - ID_B1 SINE B4 -16 208 1 4 1402 316 229 56 14 chr11 107139434 107139505 -14704351 - HAL1-3A_ME LINE L1 -815 2043 1970 4 1402 301 298 31 21 chr11 107139546 107139642 -14704214 + MLT1A0 LTR MaLR 266 362 -3 4 1402 208 291 145 5 chr11 107139812 107139979 -14703877 + MIR SINE MIR 53 251 -17 4 1402 498 236 233 11 chr11 107140111 107140287 -14703569 - ID_B1 SINE B4 -8 216 2 4 1402 379 274 53 82 chr11 107141556 107141729 -14702127 + B4A SINE B4 77 247 -45 4 1402 364 257 256 110 chr11 107142011 107142173 -14701683 - B4 SINE B4 0 292 2 4 1402 615 184 18 0 chr11 107142068 107142177 -14701679 - B1_Mur1 SINE Alu 0 149 39 4 1402 488 239 0 0 chr11 107142173 107142265 -14701591 - B3 SINE B2 -123 93 2 4 1402 311 0 0 25 chr11 107142356 107142396 -14701460 + (TGGGGG)n Simple_repeat Simple_repeat 3 41 0 4 1402 448 247 22 0 chr11 107142845 107142934 -14700922 + RSINE1 SINE B4 3 93 -72 4 1402 183 80 0 0 chr11 107143154 107143179 -14700677 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1402 372 269 0 63 chr11 107143179 107143191 -14700665 - ID_B1 SINE B4 0 224 215 4 1402 1178 82 0 0 chr11 107143191 107143337 -14700519 - B1_Mus2 SINE Alu 0 147 2 4 1402 372 269 0 63 chr11 107143337 107143435 -14700421 - ID_B1 SINE B4 -10 214 121 4 1402 230 136 23 0 chr11 107143443 107143487 -14700369 + C-rich Low_complexity Low_complexity 5 49 0 4 1402 745 62 0 0 chr11 107143489 107143586 -14700270 - B1_Mus1 SINE Alu -51 97 1 4 1402 375 250 0 36 chr11 107143586 107143665 -14700191 - ID_B1 SINE B4 -68 156 81 4 1402 191 146 24 0 chr11 107143695 107143736 -14700120 + (TTG)n Simple_repeat Simple_repeat 1 42 0 4 1402 289 305 109 44 chr11 107143748 107143885 -14699971 - RSINE1 SINE B4 -17 148 3 4 1402 36 23 0 0 chr11 107144370 107144413 -14699443 + AT_rich Low_complexity Low_complexity 1 43 0 5 1402 429 250 0 72 chr11 107144420 107144545 -14699311 - PB1D10 SINE Alu 0 117 2 5 1402 338 256 0 13 chr11 107144775 107144854 -14699002 + B4A SINE B4 2 79 -213 5 1402 249 194 137 14 chr11 107144910 107144983 -14698873 + B4 SINE B4 201 282 -10 5 1402 516 32 0 0 chr11 107144987 107145049 -14698807 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 5 1402 489 245 84 0 chr11 107145127 107145270 -14698586 + RSINE1 SINE B4 4 158 -7 5 1402 310 277 56 167 chr11 107145694 107145928 -14697928 + MTEa LTR MaLR 172 379 0 5 1402 322 288 68 104 chr11 107145929 107146092 -14697764 + B4A SINE B4 2 158 -134 5 1402 454 293 52 0 chr11 107147662 107147778 -14696078 + B1F SINE Alu 10 131 -18 5 1402 21 71 0 0 chr11 107147852 107147894 -14695962 + AT_rich Low_complexity Low_complexity 1 42 0 5 1402 458 305 9 9 chr11 107147948 107148054 -14695802 - RSINE1 SINE B4 0 165 60 5 1402 615 198 18 0 chr11 107148255 107148366 -14695490 + PB1D7 SINE Alu 1 113 -7 5 1402 466 304 36 15 chr11 107149017 107149154 -14694702 - B1F SINE Alu 0 149 10 5 1402 678 276 64 5 chr11 107149193 107149397 -14694459 + B3 SINE B2 1 216 0 5 1402 234 0 0 0 chr11 107149648 107149674 -14694182 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1402 1278 94 0 27 chr11 107149685 107149871 -14693985 + B2_Mm2 SINE B2 1 181 -14 5 1402 792 257 18 83 chr11 107150451 107150555 -14693301 + B3 SINE B2 3 95 -121 5 1402 1689 16 0 20 chr11 107150555 107150751 -14693105 + B2_Mm1a SINE B2 2 193 0 5 1402 792 257 18 83 chr11 107150751 107150875 -14692981 + B3 SINE B2 96 216 0 5 1402 414 194 98 39 chr11 107150898 107151000 -14692856 + PB1 SINE Alu 1 108 -19 5 1402 256 288 110 24 chr11 107151005 107151087 -14692769 + B4A SINE B4 68 156 -136 5 1402 180 346 147 6 chr11 107151202 107151359 -14692497 + L2 LINE L2 2541 2719 -700 5 1402 328 313 92 125 chr11 107151920 107152162 -14691694 - B4A SINE B4 -2 290 64 5 1402 3192 53 27 25 chr11 107152162 107152568 -14691288 - MTB_Mm LTR MaLR 0 407 1 5 1402 328 313 92 125 chr11 107152568 107152606 -14691250 - B4A SINE B4 -229 63 19 5 1402 226 390 71 0 chr11 107152719 107152860 -14690996 + MER5B DNA MER1_type 5 155 -23 5 1402 442 259 103 8 chr11 107153073 107153190 -14690666 + RSINE1 SINE B4 3 130 -35 5 1402 189 0 0 0 chr11 107153196 107153217 -14690639 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1402 225 284 224 6 chr11 107153217 107153249 -14690607 + B2_Mm1a SINE B2 159 190 -3 5 1402 235 267 167 0 chr11 107153269 107153359 -14690497 + B1F1 SINE Alu 10 114 -35 5 1402 183 216 0 0 chr11 107153388 107153425 -14690431 + MER5B DNA MER1_type 141 177 -1 5 1402 1058 135 0 0 chr11 107154561 107154709 -14689147 - B1_Mus1 SINE Alu 0 148 1 5 1402 658 228 58 58 chr11 107154728 107154919 -14688937 - B3 SINE B2 -1 215 25 5 1402 646 283 99 42 chr11 107155105 107155367 -14688489 + B4A SINE B4 2 278 -14 5 1402 261 118 0 0 chr11 107155372 107155423 -14688433 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1402 683 0 0 0 chr11 107155633 107155717 -14688139 - L1Md_A LINE L1 0 6582 6499 5 1402 249 196 0 0 chr11 107155992 107156038 -14687818 - MER58A DNA MER1_type -132 92 47 5 1402 799 299 43 70 chr11 107156044 107156329 -14687527 + B4A SINE B4 2 280 -12 5 1402 270 0 0 0 chr11 107156329 107156359 -14687497 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1402 799 299 43 70 chr11 107156359 107156372 -14687484 + B4A SINE B4 281 292 0 5 1402 225 236 70 172 chr11 107156723 107156851 -14687005 - PB1D7 SINE Alu -1 119 5 5 1402 307 121 45 0 chr11 107156915 107156981 -14686875 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 5 1402 330 45 0 0 chr11 107158112 107158156 -14685700 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1402 733 177 16 0 chr11 107158156 107158280 -14685576 - B1_Mur4 SINE Alu -13 137 12 5 1402 372 290 48 61 chr11 107158285 107158432 -14685424 - B4A SINE B4 -147 145 1 5 1402 616 325 44 66 chr11 107158466 107158739 -14685117 + B4 SINE B4 5 271 -21 5 1402 1233 48 7 0 chr11 107158775 107158921 -14684935 - B1_Mm SINE Alu 0 147 1 5 1402 1400 78 10 10 chr11 107158923 107159118 -14684738 - B2_Mm2 SINE B2 0 195 1 5 1402 508 296 21 17 chr11 107159682 107159849 -14684007 - MIR SINE MIR -99 177 8 5 1402 253 341 107 12 chr11 107159851 107160020 -14683836 + MER5A DNA MER1_type 3 187 -2 5 1402 322 299 0 38 chr11 107160883 107160963 -14682893 - B4A SINE B4 -213 79 3 5 1402 464 333 52 0 chr11 107161336 107161471 -14682385 + RSINE1 SINE B4 24 165 0 5 1402 950 226 39 106 chr11 107161657 107161865 -14681991 - B3 SINE B2 0 195 2 5 1402 282 87 0 0 chr11 107161916 107161962 -14681894 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1402 542 338 0 20 chr11 107162182 107162333 -14681523 - RSINE1 SINE B4 -15 150 3 5 1402 216 86 0 0 chr11 107162541 107162576 -14681280 + (TATG)n Simple_repeat Simple_repeat 2 36 0 5 1402 1575 23 0 0 chr11 107162578 107162752 -14681104 - B2_Mm1a SINE B2 -18 175 2 5 1402 218 286 19 117 chr11 107163192 107163295 -14680561 - B4A SINE B4 -198 94 2 5 1402 393 352 14 13 chr11 107163814 107163995 -14679861 - MLT1B LTR MaLR 0 467 259 5 1402 1160 76 0 0 chr11 107164103 107164247 -14679609 + B1_Mus1 SINE Alu 5 148 0 5 1402 279 0 0 0 chr11 107164292 107164323 -14679533 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1402 650 299 17 17 chr11 107164334 107164511 -14679345 - B3A SINE B2 -17 181 5 5 1402 298 242 20 29 chr11 107164516 107164543 -14679313 - BC1_Mm scRNA scRNA -37 115 89 5 1402 1218 41 7 0 chr11 107164543 107164689 -14679167 - B1_Mm SINE Alu 0 147 1 5 1402 298 242 20 29 chr11 107164689 107164763 -14679093 - BC1_Mm scRNA scRNA -64 88 15 5 1402 234 319 0 40 chr11 107164907 107164982 -14678874 - B1F SINE Alu 0 149 78 5 1402 300 288 0 0 chr11 107165778 107165844 -14678012 + Charlie12 DNA MER1_type 7 72 -2801 5 1402 225 369 126 16 chr11 107166059 107166249 -14677607 + MLT1E LTR MaLR 406 616 -37 5 1402 249 57 0 0 chr11 107167480 107167515 -14676341 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1402 1619 26 16 0 chr11 107168104 107168293 -14675563 - B2_Mm1t SINE B2 0 193 2 5 1402 212 119 21 106 chr11 107168413 107168460 -14675396 + ID4_ SINE ID 2 44 -39 5 1402 242 259 0 0 chr11 107168495 107168549 -14675307 + tRNA-Ala-GCG tRNA tRNA 15 68 -7 5 1402 898 262 131 126 chr11 107168624 107169219 -14674637 - L1MB7 LINE L1 -95 6089 5492 5 1402 1520 63 16 0 chr11 107169689 107169880 -14673976 - B2_Mm2 SINE B2 -1 194 1 5 1402 526 218 10 0 chr11 107170102 107170203 -14673653 - ID_B1 SINE B4 0 224 123 5 1402 225 187 40 0 chr11 107170600 107170675 -14673181 + CT-rich Low_complexity Low_complexity 2 79 0 5 1402 620 286 16 99 chr11 107170681 107170995 -14672861 - B4 SINE B4 -4 288 1 5 1402 259 301 0 46 chr11 107171019 107171127 -14672729 + C-rich Low_complexity Low_complexity 2 104 0 5 1402 282 253 337 0 chr11 107171129 107171212 -14672644 - B1F2 SINE Alu -35 114 4 5 1402 681 174 16 8 chr11 107171282 107171404 -14672452 - B1_Mur2 SINE Alu -6 143 21 5 1402 260 250 51 26 chr11 107172354 107172432 -14671424 + B2_Mm1t SINE B2 2 81 -112 5 1402 653 215 147 62 chr11 107172363 107172530 -14671326 + B4A SINE B4 13 206 -86 5 1402 195 69 0 0 chr11 107172530 107172559 -14671297 + (CAGAGA)n Simple_repeat Simple_repeat 4 32 0 5 1402 653 215 147 62 chr11 107172559 107172649 -14671207 + B4A SINE B4 207 292 0 5 1402 186 250 0 0 chr11 107172649 107172721 -14671135 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1402 554 269 78 0 chr11 107172881 107173022 -14670834 + RSINE1 SINE B4 2 153 -12 5 1402 259 258 137 46 chr11 107173022 107173056 -14670800 + B2_Mm2 SINE B2 1 191 -4 5 1402 420 20 0 0 chr11 107173168 107173217 -14670639 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1402 207 167 0 0 chr11 107173464 107173500 -14670356 + (CGGGG)n Simple_repeat Simple_repeat 2 37 0 5 1402 540 246 28 76 chr11 107174269 107174414 -14669442 - B1F1 SINE Alu -3 146 9 5 1402 653 290 82 82 chr11 107174793 107175109 -14668747 - ORR1E LTR MaLR -2 357 42 5 1402 691 295 93 0 chr11 107175805 107175988 -14667868 + ID_B1 SINE B4 2 201 -23 5 1402 931 268 80 50 chr11 107177252 107177590 -14666266 + MLT1A LTR MaLR 1 348 -26 5 1402 383 119 43 29 chr11 107177741 107177810 -14666046 + ID_B1 SINE B4 152 221 -3 5 1402 445 292 33 8 chr11 107177872 107177993 -14665863 + ID_B1 SINE B4 15 138 -86 5 1402 416 283 65 4 chr11 107178027 107178182 -14665674 + RSINE1 SINE B4 2 165 0 5 1402 331 262 119 18 chr11 107178464 107178476 -14665380 - PB1D9 SINE Alu 0 120 110 5 1402 200 35 35 0 chr11 107178476 107178505 -14665351 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1402 331 262 119 18 chr11 107178505 107178601 -14665255 - PB1D9 SINE Alu -11 109 1 5 1402 205 228 25 0 chr11 107178712 107178791 -14665065 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1402 1012 259 44 12 chr11 107179638 107179927 -14663929 + MTEa LTR MaLR 67 377 -2 5 1402 710 171 35 35 chr11 107179994 107180139 -14663717 + B1_Mur1 SINE Alu 5 149 0 5 1402 217 68 22 22 chr11 107180140 107180185 -14663671 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 5 1402 598 156 92 0 chr11 107180292 107180401 -14663455 - PB1D9 SINE Alu -1 119 1 5 1402 1054 275 20 48 chr11 107180881 107181175 -14662681 - B4A SINE B4 0 292 7 5 1402 593 177 97 0 chr11 107181227 107181340 -14662516 + B3A SINE B2 1 124 -74 5 1402 1265 194 77 25 chr11 107181347 107181633 -14662223 + MTD LTR MaLR 118 418 -1 5 1402 21 36 0 0 chr11 107181940 107181968 -14661888 + AT_rich Low_complexity Low_complexity 1 28 0 5 1402 310 215 46 0 chr11 107182456 107182521 -14661335 - L1MEg LINE L1 -4144 1940 1873 6 1402 247 268 0 18 chr11 107182994 107183051 -14660805 + polypurine Low_complexity Low_complexity 3 58 0 6 1402 437 0 19 0 chr11 107183200 107183253 -14660603 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1402 253 269 103 41 chr11 107183272 107183369 -14660487 - B2_Mm2 SINE B2 -71 124 22 6 1402 489 272 193 13 chr11 107183528 107183766 -14660090 + B4 SINE B4 1 281 -11 6 1402 933 265 52 114 chr11 107183844 107184248 -14659608 + MTEb LTR MaLR 1 379 0 6 1402 727 254 69 25 chr11 107184913 107185115 -14658741 - ID_B1 SINE B4 -13 211 1 6 1402 901 299 129 19 chr11 107185675 107185980 -14657876 + MTE2a LTR MaLR 63 379 0 6 1402 843 158 31 50 chr11 107186016 107186176 -14657680 + B2_Mm2 SINE B2 2 158 -37 6 1402 198 0 0 0 chr11 107186179 107186201 -14657655 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1402 1466 72 0 25 chr11 107186217 107186384 -14657472 + B2_Mm2 SINE B2 1 167 -28 6 1402 1169 75 0 0 chr11 107186384 107186531 -14657325 - B1_Mus1 SINE Alu -1 147 1 6 1402 1466 72 0 25 chr11 107186531 107186562 -14657294 + B2_Mm2 SINE B2 168 194 -1 6 1402 266 324 47 19 chr11 107186767 107186874 -14656982 + MTEb LTR MaLR 268 377 -2 6 1402 225 0 0 0 chr11 107187374 107187399 -14656457 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1402 234 233 0 0 chr11 107188210 107188270 -14655586 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 6 1402 520 246 188 47 chr11 107188363 107188619 -14655237 - B4A SINE B4 0 292 1 6 1402 479 342 32 67 chr11 107188952 107189234 -14654622 - MTE2b LTR MaLR -107 272 1 6 1402 260 261 76 0 chr11 107189597 107189689 -14654167 + L1M4 LINE L1 5339 5437 -737 6 1402 439 279 0 18 chr11 107189689 107189802 -14654054 + B4A SINE B4 1 111 -181 6 1402 411 21 0 0 chr11 107189845 107189893 -14653963 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1402 225 0 0 0 chr11 107189936 107189961 -14653895 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 6 1402 270 220 185 11 chr11 107190358 107190450 -14653406 + MLT1N2 LTR MaLR 453 560 -2 6 1402 1536 52 0 16 chr11 107191035 107191229 -14652627 + B2_Mm2 SINE B2 1 191 -4 6 1402 1589 52 0 0 chr11 107191410 107191603 -14652253 - B2_Mm1a SINE B2 0 193 1 6 1402 369 245 117 0 chr11 107191615 107191709 -14652147 - PB1D10 SINE Alu -5 112 8 6 1402 422 49 16 0 chr11 107191799 107191860 -14651996 + (CATA)n Simple_repeat Simple_repeat 1 62 0 6 1402 180 200 162 62 chr11 107192254 107192334 -14651522 + L2 LINE L2 1503 1590 -1829 6 1402 781 169 214 6 chr11 107192835 107193008 -14650848 - B3 SINE B2 -7 209 1 6 1402 210 246 69 156 chr11 107193098 107193329 -14650527 - B4A SINE B4 0 292 82 6 1402 370 360 64 21 chr11 107193924 107194205 -14649651 - L1M5 LINE L1 -655 5585 5293 6 1402 227 0 0 0 chr11 107194223 107194277 -14649579 + L1Md_T LINE L1 6545 6582 0 6 1402 729 224 48 69 chr11 107194278 107194466 -14649390 + B3A SINE B2 22 205 -11 6 1402 218 274 76 61 chr11 107195170 107195236 -14648620 - ID4 SINE ID 0 83 17 6 1402 512 253 0 0 chr11 107195725 107195820 -14648036 + PB1D9 SINE Alu 11 105 -15 6 1402 384 264 104 19 chr11 107196104 107196259 -14647597 - B3A SINE B2 -2 193 30 6 1402 1085 101 0 12 chr11 107196240 107196401 -14647455 - B2_Mm2 SINE B2 -35 160 2 6 1402 181 337 40 40 chr11 107196748 107196847 -14647009 - L3 LINE CR1 -1583 2906 2808 6 1402 270 0 0 0 chr11 107197580 107197610 -14646246 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1402 207 0 0 0 chr11 107197699 107197722 -14646134 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 1402 426 59 718 0 chr11 107197722 107197807 -14646049 - B1_Mus1 SINE Alu -2 146 1 6 1402 800 278 32 102 chr11 107197822 107198135 -14645721 - B4A SINE B4 -1 291 1 6 1402 667 289 44 25 chr11 107199382 107199606 -14644250 - ID_B1 SINE B4 -38 254 30 6 1402 222 105 0 0 chr11 107199639 107199677 -14644179 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1402 494 300 27 0 chr11 107200016 107200126 -14643730 + RSINE1 SINE B4 32 144 -21 6 1402 327 122 0 0 chr11 107201063 107201112 -14642744 + L1M4 LINE L1 5788 5836 -338 6 1402 354 289 9 28 chr11 107201164 107201271 -14642585 + MLT1B LTR MaLR 111 215 -175 6 1402 292 342 26 26 chr11 107201301 107201415 -14642441 + MLT1B LTR MaLR 304 417 -50 6 1402 575 236 109 14 chr11 107201459 107201636 -14642220 + B4A SINE B4 1 197 -95 6 1402 393 246 175 35 chr11 107201636 107201779 -14642077 + RSINE1 SINE B4 1 163 -2 6 1402 216 0 0 0 chr11 107201799 107201823 -14642033 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6 1402 360 0 0 0 chr11 107201889 107201929 -14641927 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1402 384 315 56 93 chr11 107202098 107202420 -14641436 + Lx8 LINE L1 7153 7462 -11 6 1402 218 221 22 44 chr11 107202423 107202513 -14641343 + (CATATA)n Simple_repeat Simple_repeat 5 92 0 6 1402 682 238 19 19 chr11 107203220 107203374 -14640482 + B3A SINE B2 1 154 -44 6 1402 225 250 0 0 chr11 107203855 107203903 -14639953 + B1F SINE Alu 3 50 -99 6 1402 2240 176 23 42 chr11 107203905 107203981 -14639875 + MTC LTR MaLR 3 72 -349 6 1402 986 138 65 16 chr11 107203981 107204165 -14639691 + B2_Mm2 SINE B2 3 195 0 6 1402 2240 176 23 42 chr11 107204165 107204515 -14639341 + MTC LTR MaLR 73 421 0 6 1402 616 138 142 33 chr11 107204958 107205078 -14638778 + B1_Mus1 SINE Alu 3 135 -13 6 1402 372 88 0 0 chr11 107205078 107205135 -14638721 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 6 1402 320 322 82 44 chr11 107206093 107206252 -14637604 + MER58B DNA MER1_type 174 338 -3 6 1402 543 69 0 0 chr11 107206357 107206429 -14637427 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1402 449 162 2 32 chr11 107206499 107206583 -14637273 - B1_Mur1 SINE Alu -2 147 81 6 1402 341 288 54 92 chr11 107206588 107206718 -14637138 - ID_B1 SINE B4 -13 211 87 6 1402 219 88 0 0 chr11 107207228 107207262 -14636594 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 6 1402 22 35 0 0 chr11 107207663 107207692 -14636164 + AT_rich Low_complexity Low_complexity 1 29 0 6 1402 502 271 25 83 chr11 107207739 107207896 -14635960 - RSINE1 SINE B4 -17 148 1 6 1402 509 263 18 151 chr11 107208025 107208116 -14635740 - B3A SINE B2 0 198 125 6 1402 798 67 0 0 chr11 107208116 107208221 -14635635 + (CA)n Simple_repeat Simple_repeat 1 105 0 6 1402 509 263 18 151 chr11 107208221 107208348 -14635508 - B3A SINE B2 -74 124 9 6 1402 23 0 0 0 chr11 107208349 107208372 -14635484 + AT_rich Low_complexity Low_complexity 1 23 0 6 1402 330 199 92 14 chr11 107208400 107208508 -14635348 + B1_Mus2 SINE Alu 2 142 -5 6 1402 661 79 0 19 chr11 107208525 107208628 -14635228 + (GGAGA)n Simple_repeat Simple_repeat 4 104 0 6 1402 904 258 14 18 chr11 107208637 107208858 -14634998 + ID_B1 SINE B4 5 224 0 6 1402 1212 21 7 7 chr11 107209236 107209380 -14634476 - B1_Mm SINE Alu 0 147 4 6 1402 1234 153 63 15 chr11 107210140 107210346 -14633510 + B3 SINE B2 1 216 0 6 1402 356 309 147 45 chr11 107210754 107210910 -14632946 - B4A SINE B4 -120 172 1 6 1402 1007 224 63 60 chr11 107211805 107212128 -14631728 + MTE2b LTR MaLR 1 314 -56 6 1402 988 71 0 0 chr11 107212133 107212260 -14631596 - B2_Mm2 SINE B2 -68 127 1 6 1402 990 275 71 40 chr11 107212584 107213080 -14630776 - L1MA5 LINE L1 -362 5938 5428 6 1402 284 286 9 62 chr11 107213193 107213305 -14630551 - L1M4 LINE L1 -743 5441 5336 6 1402 1072 52 52 0 chr11 107213530 107213664 -14630192 + B1_Mm SINE Alu 1 141 -6 6 1402 1038 121 0 0 chr11 107213668 107213834 -14630022 + (GAA)n Simple_repeat Simple_repeat 2 167 0 6 1402 185 184 0 73 chr11 107214230 107214271 -14629585 - L2 LINE L2 -785 2634 2597 6 1402 317 355 0 0 chr11 107214348 107214458 -14629398 + C-rich Low_complexity Low_complexity 1 110 0 6 1402 1194 114 45 0 chr11 107214667 107214843 -14629013 - B2_Mm2 SINE B2 -10 185 2 6 1402 639 272 93 24 chr11 107214930 107215256 -14628600 - L1MB7 LINE L1 -128 6052 5699 6 1402 360 235 9 133 chr11 107215257 107215370 -14628486 + URR1B DNA MER1_type 1 99 -126 6 1402 708 311 82 19 chr11 107215391 107215660 -14628196 + B4A SINE B4 4 289 -3 6 1402 413 235 200 24 chr11 107216017 107216187 -14627669 + ID_B1 SINE B4 3 202 -22 6 1402 414 272 30 30 chr11 107216389 107216541 -14627315 - MIRb SINE MIR -75 193 31 6 1403 294 29 0 0 chr11 107218266 107218301 -14625555 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1403 1046 176 17 59 chr11 107218473 107218709 -14625147 + URR1A DNA MER1_type 1 226 0 6 1403 242 282 25 98 chr11 107219072 107219194 -14624662 - B1F2 SINE Alu -15 134 22 6 1403 599 305 40 45 chr11 107219088 107219287 -14624569 - B4 SINE B4 -86 206 9 6 1403 528 252 50 8 chr11 107219462 107219582 -14624274 + RSINE1 SINE B4 2 126 -39 6 1403 280 282 102 74 chr11 107219582 107219638 -14624218 + B2_Mm2 SINE B2 1 181 -14 6 1403 248 224 183 109 chr11 107219887 107220062 -14623794 + B3A SINE B2 3 190 -5 6 1403 477 262 0 0 chr11 107220274 107220384 -14623472 + B1F SINE Alu 1 110 -10 6 1403 486 333 8 0 chr11 107220488 107220617 -14623239 + ID_B1 SINE B4 86 215 -9 6 1403 264 59 0 0 chr11 107220618 107220652 -14623204 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 6 1403 405 319 219 0 chr11 107220673 107220842 -14623014 + ID_B1 SINE B4 16 221 -3 6 1403 213 220 0 20 chr11 107220843 107220894 -14622962 + G-rich Low_complexity Low_complexity 4 53 0 6 1403 276 30 0 0 chr11 107220955 107220988 -14622868 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1403 421 295 128 30 chr11 107221017 107221283 -14622573 - B4A SINE B4 0 292 1 7 1403 22 70 0 0 chr11 107221293 107221336 -14622520 + AT_rich Low_complexity Low_complexity 1 43 0 7 1403 277 194 168 30 chr11 107222009 107222110 -14621746 - PB1D10 SINE Alu 0 117 3 7 1403 485 244 128 105 chr11 107222613 107222880 -14620976 + MTD LTR MaLR 18 356 -63 7 1403 23 0 0 0 chr11 107223579 107223602 -14620254 + AT_rich Low_complexity Low_complexity 1 23 0 7 1403 353 316 45 61 chr11 107223647 107223679 -14620177 + ID_B1 SINE B4 54 161 -131 7 1403 706 211 30 0 chr11 107223679 107223812 -14620044 + B1_Mus1 SINE Alu 6 142 -6 7 1403 353 316 45 61 chr11 107223812 107223833 -14620023 + ID_B1 SINE B4 162 240 -52 7 1403 221 310 0 33 chr11 107223835 107223895 -14619961 + ID4 SINE ID 2 59 -24 7 1403 444 19 0 0 chr11 107223900 107223953 -14619903 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1403 1197 62 0 0 chr11 107224091 107224236 -14619620 + B1_Mus2 SINE Alu 2 146 -1 7 1403 255 322 11 22 chr11 107224384 107224473 -14619383 + B4 SINE B4 116 203 -89 7 1403 215 175 18 0 chr11 107224564 107224621 -14619235 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 7 1403 518 198 26 35 chr11 107224830 107224945 -14618911 + PB1D7 SINE Alu 1 114 -6 7 1403 907 153 26 38 chr11 107224992 107225161 -14618695 + B3 SINE B2 65 211 -5 7 1403 21 0 0 0 chr11 107225753 107225774 -14618082 + AT_rich Low_complexity Low_complexity 1 21 0 7 1403 250 171 0 0 chr11 107226034 107226075 -14617781 + B4A SINE B4 2 42 -250 7 1403 426 219 77 41 chr11 107226210 107226393 -14617463 + L1M4 LINE L1 3117 3289 -2857 7 1403 680 300 21 0 chr11 107226426 107226616 -14617240 + B4A SINE B4 1 194 -98 7 1403 515 276 22 15 chr11 107226654 107226790 -14617066 - B1F2 SINE Alu -12 137 1 7 1403 252 315 27 0 chr11 107227503 107227576 -14616280 - ID4 SINE ID -3 80 6 7 1403 365 268 8 61 chr11 107228334 107228465 -14615391 - MIR SINE MIR -31 231 108 7 1403 289 185 42 10 chr11 107228698 107228769 -14615087 + B1F2 SINE Alu 43 111 -6 7 1403 478 309 50 50 chr11 107228890 107229050 -14614806 + B3A SINE B2 1 160 -38 7 1403 692 233 61 6 chr11 107229404 107229585 -14614271 + B3A SINE B2 3 193 -5 7 1403 312 213 0 0 chr11 107229611 107229672 -14614184 + L1M3 LINE L1 4984 5044 -1096 7 1403 721 252 111 0 chr11 107230077 107230275 -14613581 - ID_B1 SINE B4 -3 221 2 7 1403 414 0 0 0 chr11 107230429 107230475 -14613381 + (TCCC)n Simple_repeat Simple_repeat 2 47 0 7 1403 198 0 0 0 chr11 107230700 107230722 -14613134 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1403 623 243 41 36 chr11 107231369 107231565 -14612291 + B3A SINE B2 2 198 0 7 1403 358 250 31 10 chr11 107231570 107231667 -14612189 + PB1D9 SINE Alu 1 99 -21 7 1403 1012 141 0 7 chr11 107231696 107231846 -14612010 + B1_Mur3 SINE Alu 1 149 0 7 1403 450 0 0 0 chr11 107232156 107232206 -14611650 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1403 413 329 179 13 chr11 107232227 107232461 -14611395 - B4A SINE B4 -7 285 13 7 1403 329 298 10 60 chr11 107232848 107232948 -14610908 + RSINE1 SINE B4 71 165 0 7 1403 261 249 70 76 chr11 107232970 107233149 -14610707 + MTEa LTR MaLR 192 379 0 7 1403 500 274 112 39 chr11 107233407 107233612 -14610244 - ID_B1 SINE B4 0 224 5 7 1403 579 287 72 101 chr11 107234384 107234579 -14609277 - MER44A DNA MER2_type -17 322 122 7 1403 497 176 176 0 chr11 107234579 107234681 -14609175 + PB1D9 SINE Alu 1 120 0 7 1403 579 287 72 101 chr11 107234681 107234791 -14609065 - MER44A DNA MER2_type -218 121 26 7 1403 324 256 78 71 chr11 107234834 107234938 -14608918 + PB1D10 SINE Alu 1 127 0 7 1403 236 114 204 0 chr11 107234957 107235001 -14608855 + L1M5 LINE L1 5871 5923 -521 7 1403 783 244 126 66 chr11 107235027 107235361 -14608495 + ORR1E LTR MaLR 4 357 -2 7 1403 441 275 289 10 chr11 107235460 107235713 -14608143 - MLT1D LTR MaLR -24 481 179 7 1403 46 19 0 0 chr11 107235800 107235853 -14608003 + AT_rich Low_complexity Low_complexity 1 53 0 7 1403 225 340 46 78 chr11 107236136 107236289 -14607567 - MLT1D-int LTR MaLR -462 1027 880 7 1403 807 239 96 5 chr11 107236314 107236512 -14607344 - B3 SINE B2 0 216 1 7 1403 22 0 0 0 chr11 107237227 107237249 -14606607 + AT_rich Low_complexity Low_complexity 1 22 0 7 1403 704 247 32 0 chr11 107238681 107238839 -14605017 + ID_B1 SINE B4 5 167 -57 7 1403 253 281 9 127 chr11 107238765 107238841 -14605015 + MT2B LTR ERVL 177 246 -355 7 1403 369 109 0 0 chr11 107238841 107238896 -14604960 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1403 253 281 9 127 chr11 107238896 107238929 -14604927 + MT2B LTR ERVL 247 273 -328 7 1403 249 333 0 0 chr11 107238918 107238987 -14604869 + ID4 SINE ID 15 83 0 7 1403 863 111 0 0 chr11 107239132 107239258 -14604598 + B1_Mus1 SINE Alu 23 148 0 7 1403 744 115 0 0 chr11 107239288 107239401 -14604455 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 7 1403 205 191 0 0 chr11 107239928 107239970 -14603886 + G-rich Low_complexity Low_complexity 6 47 0 7 1403 325 234 0 0 chr11 107239976 107240040 -14603816 + L1M3 LINE L1 5611 5674 -509 7 1403 1173 44 0 0 chr11 107240158 107240295 -14603561 + B1_Mus1 SINE Alu 2 138 -10 7 1403 306 0 0 0 chr11 107240295 107240329 -14603527 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1403 500 276 55 8 chr11 107240329 107240457 -14603399 + RSINE1 SINE B4 3 136 -29 7 1403 560 292 54 0 chr11 107240498 107240666 -14603190 + B3A SINE B2 1 177 -21 7 1403 193 135 19 19 chr11 107241197 107241250 -14602606 + A-rich Low_complexity Low_complexity 2 54 0 7 1403 1391 89 5 16 chr11 107241890 107242083 -14601773 - B2_Mm1a SINE B2 -2 191 1 7 1403 221 305 68 0 chr11 107242154 107242213 -14601643 + ID4 SINE ID 10 72 -11 7 1403 225 299 73 18 chr11 107242626 107242660 -14601196 + PB1D7 SINE Alu 6 119 0 7 1403 408 216 0 0 chr11 107242660 107242734 -14601122 + ID_B1 SINE B4 151 224 0 7 1403 745 191 159 22 chr11 107244023 107244205 -14599651 + ID_B1 SINE B4 5 211 -13 7 1403 749 276 83 69 chr11 107244607 107244895 -14598961 + B4A SINE B4 1 292 0 7 1403 246 220 0 0 chr11 107245031 107245090 -14598766 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 7 1403 1117 52 0 0 chr11 107245225 107245359 -14598497 + B1_Mus1 SINE Alu 1 134 -14 7 1403 450 0 0 0 chr11 107245359 107245409 -14598447 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1403 224 279 88 0 chr11 107246191 107246259 -14597597 + MIR3 SINE MIR 120 193 -15 7 1403 336 293 33 41 chr11 107246333 107246454 -14597402 - B3A SINE B2 -1 197 78 7 1403 778 220 58 29 chr11 107246734 107246907 -14596949 - B3 SINE B2 -32 184 7 7 1403 455 319 0 0 chr11 107246899 107247012 -14596844 + B3A SINE B2 60 172 -26 7 1403 518 244 15 7 chr11 107247031 107247167 -14596689 + HAL1-2a_MD LINE L1 2341 2477 -547 7 1403 403 255 175 63 chr11 107247280 107247466 -14596390 + B3A SINE B2 1 205 -11 7 1403 788 148 48 21 chr11 107247510 107247655 -14596201 - B1_Mur3 SINE Alu 0 149 1 7 1403 230 342 9 17 chr11 107248655 107248771 -14595085 - L1ME4a LINE L1 -49 6075 5961 7 1403 181 120 19 39 chr11 107249012 107249064 -14594792 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1403 946 163 208 0 chr11 107249107 107249285 -14594571 + B3 SINE B2 2 216 0 7 1403 337 366 65 0 chr11 107249306 107249429 -14594427 + RSINE1 SINE B4 1 131 -34 7 1403 351 0 0 0 chr11 107249429 107249468 -14594388 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1403 887 102 0 0 chr11 107249715 107249843 -14594013 - B1_Mus1 SINE Alu -20 128 1 7 1403 603 228 120 44 chr11 107250692 107250917 -14592939 + B4A SINE B4 2 243 -49 7 1403 373 274 41 95 chr11 107250910 107251079 -14592777 + RSINE1 SINE B4 6 165 0 7 1403 441 54 0 0 chr11 107251206 107251262 -14592594 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1403 213 132 0 73 chr11 107251907 107251948 -14591908 + A-rich Low_complexity Low_complexity 5 42 0 7 1403 1754 10 0 0 chr11 107252923 107253115 -14590741 - B2_Mm1a SINE B2 0 193 2 7 1403 23 54 0 0 chr11 107253131 107253168 -14590688 + AT_rich Low_complexity Low_complexity 1 37 0 7 1403 353 254 157 9 chr11 107253517 107253632 -14590224 - MER5A1 DNA MER1_type -32 134 3 7 1403 285 98 0 0 chr11 107253722 107253763 -14590093 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1403 650 229 83 0 chr11 107253787 107253931 -14589925 - B4 SINE B4 -16 276 121 7 1403 257 241 70 26 chr11 107254283 107254388 -14589468 - B1F2 SINE Alu -1 116 2 7 1403 610 268 71 35 chr11 107254479 107254676 -14589180 - ID_B1 SINE B4 -9 215 12 7 1403 352 227 22 22 chr11 107255542 107255632 -14588224 + B4 SINE B4 12 101 -191 7 1403 634 283 20 7 chr11 107255693 107255846 -14588010 + RSINE1 SINE B4 2 156 -9 7 1403 333 0 0 0 chr11 107255975 107256012 -14587844 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1403 293 300 47 112 chr11 107256070 107256239 -14587617 + MER20 DNA MER1_type 32 189 -30 7 1403 383 261 132 2 chr11 107256564 107256740 -14587116 + L1MC4a LINE L1 6997 7193 -802 7 1403 978 55 94 0 chr11 107256853 107256981 -14586875 + B1_Mus2 SINE Alu 1 140 -7 7 1403 576 285 30 37 chr11 107256996 107257160 -14586696 + B3A SINE B2 27 189 -9 7 1403 408 302 15 38 chr11 107257274 107257405 -14586451 - RSINE1 SINE B4 -28 137 10 7 1403 343 310 98 49 chr11 107257589 107257772 -14586084 - B4A SINE B4 -23 269 78 8 1403 343 296 0 50 chr11 107257799 107257920 -14585936 - PB1D10 SINE Alu -1 116 2 8 1403 367 238 209 0 chr11 107258377 107258482 -14585374 + RSINE1 SINE B4 2 128 -37 8 1403 270 333 167 0 chr11 107259077 107259185 -14584671 + ID_B1 SINE B4 84 209 -15 8 1403 259 261 0 0 chr11 107259253 107259318 -14584538 + tRNA-Ala-GCA tRNA tRNA 3 67 -8 8 1403 220 276 107 48 chr11 107259318 107259356 -14584500 + ID_B1 SINE B4 9 117 -107 8 1403 1118 153 15 26 chr11 107259991 107260186 -14583670 - URR1B DNA MER1_type 0 225 33 8 1403 297 0 0 0 chr11 107261374 107261407 -14582449 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1403 234 338 52 0 chr11 107261407 107261474 -14582382 - B3A SINE B2 -15 183 113 8 1403 543 260 19 45 chr11 107261475 107261632 -14582224 - RSINE1 SINE B4 -10 155 3 8 1403 606 263 0 8 chr11 107262507 107262641 -14581215 + B3A SINE B2 1 133 -65 8 1403 207 0 0 0 chr11 107262661 107262684 -14581172 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1403 22 0 0 0 chr11 107262747 107262769 -14581087 + AT_rich Low_complexity Low_complexity 1 22 0 8 1403 364 125 0 18 chr11 107262867 107262924 -14580932 + B1_Mm SINE Alu 92 147 0 8 1403 207 0 0 0 chr11 107262925 107262948 -14580908 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 8 1403 1195 55 7 0 chr11 107263039 107263184 -14580672 + B1_Mus1 SINE Alu 3 148 0 8 1403 431 292 48 28 chr11 107263263 107263417 -14580439 + B3 SINE B2 61 213 -3 8 1403 231 295 191 28 chr11 107263707 107263885 -14579971 - LTR16B LTR ERVL -92 371 165 8 1403 1132 59 0 0 chr11 107264330 107264466 -14579390 + B1_Mus1 SINE Alu 2 137 -11 8 1403 271 275 43 0 chr11 107264496 107264565 -14579291 + B3A SINE B2 28 99 -99 8 1403 258 286 29 0 chr11 107264605 107264675 -14579181 + B4A SINE B4 80 151 -141 8 1403 303 317 75 27 chr11 107264616 107264750 -14579106 + PB1D10 SINE Alu 7 146 -3 8 1403 611 176 151 2 chr11 107265049 107265207 -14578649 + B3 SINE B2 2 188 -7 8 1403 779 252 24 38 chr11 107265258 107265468 -14578388 + B4 SINE B4 26 232 -60 8 1403 1295 74 34 0 chr11 107265474 107265650 -14578206 + B2_Mm2 SINE B2 1 182 -13 8 1403 324 0 0 0 chr11 107265660 107265696 -14578160 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1403 633 218 0 0 chr11 107265700 107265810 -14578046 - B3 SINE B2 -106 110 1 8 1403 250 156 27 39 chr11 107265865 107265927 -14577929 + B1F SINE Alu 82 149 0 8 1403 276 315 33 0 chr11 107265896 107265988 -14577868 + B4 SINE B4 196 290 -2 8 1403 311 252 12 22 chr11 107266030 107266121 -14577735 - ID4 SINE ID -61 91 2 8 1403 302 316 62 26 chr11 107266122 107266317 -14577539 + L1M5 LINE L1 5619 5820 -304 8 1403 823 199 84 0 chr11 107266434 107266600 -14577256 + B3A SINE B2 3 182 -16 8 1403 437 275 9 18 chr11 107267069 107267180 -14576676 - RSINE1 SINE B4 -15 150 41 8 1403 224 303 0 143 chr11 107267216 107267239 -14576617 - B2_Mm1t SINE B2 -14 179 158 8 1403 228 111 0 0 chr11 107267239 107267275 -14576581 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1403 224 303 0 143 chr11 107267275 107267405 -14576451 - B2_Mm1t SINE B2 -36 157 48 8 1403 461 168 78 78 chr11 107267400 107267516 -14576340 - B1F SINE Alu -21 128 13 8 1403 461 246 102 22 chr11 107267792 107267929 -14575927 + MER58D DNA MER1_type 110 257 -129 8 1403 815 199 93 0 chr11 107267931 107268082 -14575774 + B3 SINE B2 25 189 -27 8 1403 637 301 41 81 chr11 107268792 107269013 -14574843 - MTEb LTR MaLR -164 215 4 8 1403 430 349 6 17 chr11 107269188 107269360 -14574496 + L1M3 LINE L1 5415 5584 -596 8 1403 204 67 0 0 chr11 107269361 107269391 -14574465 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 8 1403 534 190 76 17 chr11 107269405 107269523 -14574333 - RSINE1 SINE B4 -39 126 2 8 1403 226 255 137 11 chr11 107269534 107269629 -14574227 + L1M5 LINE L1 5611 5717 -462 8 1403 340 279 0 0 chr11 107269752 107269831 -14574025 - ID_B1 SINE B4 0 224 146 8 1403 277 353 35 0 chr11 107269948 107270064 -14573792 + Tigger7 DNA MER2_type 132 251 -2240 8 1403 269 169 17 0 chr11 107270466 107270525 -14573331 + G-rich Low_complexity Low_complexity 2 61 0 8 1403 27 29 0 0 chr11 107270665 107270699 -14573157 + AT_rich Low_complexity Low_complexity 1 34 0 8 1403 378 0 0 0 chr11 107270700 107270742 -14573114 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 8 1403 589 288 28 14 chr11 107270829 107270970 -14572886 - RSINE1 SINE B4 -21 144 2 8 1403 1110 82 14 0 chr11 107271043 107271189 -14572667 + B1_Mus1 SINE Alu 1 148 0 8 1403 348 94 0 0 chr11 107271480 107271533 -14572323 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1403 251 217 83 124 chr11 107271722 107271843 -14572013 + Lx8 LINE L1 6886 7001 -472 8 1403 207 188 0 40 chr11 107271972 107272008 -14571848 + A-rich Low_complexity Low_complexity 1 36 0 8 1403 400 158 0 69 chr11 107272008 107272123 -14571733 + L1Md_F2 LINE L1 6486 6582 0 8 1403 467 234 37 9 chr11 107272299 107272407 -14571449 + PB1D7 SINE Alu 2 112 -8 8 1403 216 0 0 0 chr11 107272918 107272942 -14570914 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1403 1209 68 0 0 chr11 107273361 107273509 -14570347 + B1_Mus1 SINE Alu 1 148 0 8 1403 213 39 0 0 chr11 107273726 107273752 -14570104 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 8 1403 670 224 13 19 chr11 107273866 107274021 -14569835 + RSINE1 SINE B4 12 165 0 8 1403 221 306 80 86 chr11 107274021 107274039 -14569817 + B3A SINE B2 11 182 -16 8 1403 460 233 9 64 chr11 107274115 107274225 -14569631 + PB1D10 SINE Alu 1 104 -13 8 1403 216 0 0 0 chr11 107275026 107275050 -14568806 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1403 204 125 0 0 chr11 107275262 107275294 -14568562 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1403 323 0 48 0 chr11 107275433 107275475 -14568381 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1403 243 189 0 0 chr11 107275655 107275708 -14568148 + (CACCAT)n Simple_repeat Simple_repeat 3 55 0 8 1403 568 229 95 40 chr11 107275713 107275906 -14567950 + B4A SINE B4 1 233 -59 8 1403 324 296 71 10 chr11 107275923 107276022 -14567834 + B3 SINE B2 110 214 -2 8 1403 429 228 84 30 chr11 107276624 107276755 -14567101 - MER96B DNA hAT 0 417 280 8 1403 649 279 122 4 chr11 107276760 107277015 -14566841 + B4 SINE B4 5 289 -3 8 1403 225 0 0 0 chr11 107277293 107277318 -14566538 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1403 257 304 71 128 chr11 107277452 107277663 -14566193 + RLTR41 LTR ERV1 186 384 -62 8 1403 288 0 0 0 chr11 107278112 107278144 -14565712 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1403 796 238 11 32 chr11 107279022 107279209 -14564647 + B3A SINE B2 2 184 -14 8 1403 229 191 0 60 chr11 107279260 107279310 -14564546 - ID_B1 SINE B4 -2 222 176 8 1403 327 208 182 0 chr11 107279267 107279344 -14564512 - PB1D10 SINE Alu -9 108 18 8 1403 234 0 0 0 chr11 107279471 107279497 -14564359 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1403 381 234 31 21 chr11 107279538 107279634 -14564222 + PB1D10 SINE Alu 14 110 -7 8 1403 183 156 0 0 chr11 107279662 107279694 -14564162 + (CATA)n Simple_repeat Simple_repeat 2 33 0 8 1403 422 205 0 24 chr11 107280155 107280240 -14563616 + B3A SINE B2 2 84 -114 8 1403 250 277 164 117 chr11 107280240 107280261 -14563595 + ID_B1 SINE B4 2 221 0 8 1403 413 252 39 10 chr11 107280261 107280365 -14563491 + PB1D7 SINE Alu 14 120 0 8 1403 521 204 317 0 chr11 107280384 107280551 -14563305 + ID_B1 SINE B4 2 221 -3 8 1403 841 151 21 41 chr11 107280556 107280701 -14563155 + B1_Mur3 SINE Alu 1 142 -7 8 1403 285 240 48 48 chr11 107280996 107281101 -14562755 - Tigger5 DNA MER2_type -2206 200 96 8 1403 252 0 0 0 chr11 107281199 107281227 -14562629 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1403 1377 86 37 0 chr11 107281712 107281899 -14561957 - B2_Mm2 SINE B2 0 195 2 8 1403 472 275 94 68 chr11 107281924 107282115 -14561741 + B4A SINE B4 7 202 -90 8 1403 405 0 0 0 chr11 107282228 107282273 -14561583 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1403 416 254 26 0 chr11 107282467 107282581 -14561275 + ID_B1 SINE B4 82 198 -26 8 1403 290 169 12 112 chr11 107282596 107282676 -14561180 - RSINE1 SINE B4 -84 81 10 8 1403 552 168 8 101 chr11 107282706 107282825 -14561031 - B1_Mur4 SINE Alu -10 140 33 8 1403 307 305 61 0 chr11 107282879 107283010 -14560846 + B1F SINE Alu 2 140 -9 8 1403 369 0 0 0 chr11 107283025 107283066 -14560790 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 8 1403 960 85 85 0 chr11 107283347 107283477 -14560379 + B1_Mus1 SINE Alu 2 142 -6 8 1403 474 18 0 0 chr11 107283479 107283534 -14560322 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1403 286 217 16 1 chr11 107283741 107283820 -14560036 + ID4_ SINE ID 1 79 -73 8 1403 323 254 164 0 chr11 107284147 107284269 -14559587 + B1F1 SINE Alu 1 142 -7 8 1403 612 232 25 43 chr11 107284515 107284677 -14559179 + RSINE1 SINE B4 4 162 -3 8 1403 210 258 0 0 chr11 107284685 107284747 -14559109 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1403 277 290 263 12 chr11 107284780 107284951 -14558905 + ID_B1 SINE B4 2 215 -9 8 1403 1393 71 22 5 chr11 107285062 107285236 -14558620 + B2_Mm2 SINE B2 1 178 -17 8 1403 390 91 0 0 chr11 107285236 107285291 -14558565 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 1403 685 265 38 62 chr11 107286142 107286351 -14557505 + ID_B1 SINE B4 14 217 -7 9 1403 406 235 143 34 chr11 107286366 107286485 -14557371 + RSINE1 SINE B4 11 142 -23 9 1403 301 286 50 57 chr11 107286563 107286704 -14557152 + YREP_Mm Unknown Unknown 155 294 -1518 9 1403 562 291 15 0 chr11 107286589 107286723 -14557133 - ID_B1 SINE B4 -4 220 85 9 1403 414 223 11 14 chr11 107286882 107286984 -14556872 - B1_Mur1 SINE Alu -27 122 23 9 1403 666 320 85 68 chr11 107287018 107287370 -14556486 + MTE2a LTR MaLR 20 377 -2 9 1403 1226 118 21 0 chr11 107287907 107288094 -14555762 + B2_Mm2 SINE B2 1 191 -4 9 1403 597 122 277 7 chr11 107288229 107288370 -14555486 + B2_Mm2 SINE B2 3 181 -14 9 1403 296 160 0 39 chr11 107288383 107288435 -14555421 + B2_Mm2 SINE B2 47 96 -99 9 1403 28 29 0 0 chr11 107288439 107288474 -14555382 + AT_rich Low_complexity Low_complexity 1 35 0 9 1403 912 216 16 27 chr11 107288688 107288874 -14554982 + B3A SINE B2 12 195 -3 9 1403 616 216 84 67 chr11 107288877 107289038 -14554818 + B3A SINE B2 1 166 -32 9 1403 276 30 0 0 chr11 107289038 107289071 -14554785 + (TC)n Simple_repeat Simple_repeat 1 33 0 9 1403 616 216 84 67 chr11 107289071 107289088 -14554768 + B3A SINE B2 167 182 -16 9 1403 37 31 0 30 chr11 107289113 107289143 -14554713 + AT_rich Low_complexity Low_complexity 1 30 0 9 1403 620 25 0 0 chr11 107289143 107289223 -14554633 + L1Md_T LINE L1 6502 6581 -1 9 1403 37 31 0 30 chr11 107289223 107289258 -14554598 + AT_rich Low_complexity Low_complexity 1 34 0 9 1403 182 329 13 38 chr11 107289665 107289744 -14554112 + L2c LINE L2 3268 3344 -43 9 1403 747 165 7 29 chr11 107289951 107290088 -14553768 + B1_Mur2 SINE Alu 3 136 -13 9 1403 1134 77 0 0 chr11 107290088 107290230 -14553626 - B1_Mm SINE Alu -1 146 4 9 1403 386 161 0 0 chr11 107290762 107290824 -14553032 + B2_Mm2 SINE B2 8 69 -126 9 1403 238 319 20 81 chr11 107290807 107290906 -14552950 + B3 SINE B2 110 202 -14 9 1403 204 184 0 0 chr11 107290945 107290994 -14552862 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 9 1403 405 216 142 74 chr11 107291078 107291268 -14552588 + MT2B LTR ERVL 78 280 -321 9 1403 757 82 69 69 chr11 107291163 107291294 -14552562 + B1_Mur4 SINE Alu 18 148 -2 9 1403 1416 53 26 16 chr11 107291984 107292175 -14551681 - B2_Mm2 SINE B2 -1 194 2 9 1403 225 0 0 0 chr11 107292219 107292244 -14551612 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 9 1403 816 185 0 0 chr11 107292248 107292378 -14551478 - B3 SINE B2 -86 130 1 9 1403 376 328 114 8 chr11 107292383 107292502 -14551354 - ID_B1 SINE B4 0 224 93 9 1403 1619 209 3 45 chr11 107292502 107292838 -14551018 + MTD LTR MaLR 1 322 -97 9 1403 499 144 59 40 chr11 107292844 107292945 -14550911 + PB1D9 SINE Alu 17 119 -1 9 1403 253 252 69 20 chr11 107292958 107293059 -14550797 - ID_B1 SINE B4 -117 107 2 9 1403 797 239 79 31 chr11 107293813 107293878 -14549978 + B4 SINE B4 1 80 -212 9 1403 192 40 0 0 chr11 107293878 107293903 -14549953 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 9 1403 797 239 79 31 chr11 107293903 107294054 -14549802 + B4 SINE B4 81 227 -65 9 1403 650 239 12 42 chr11 107294054 107294220 -14549636 + B3 SINE B2 1 161 -55 9 1403 333 0 0 0 chr11 107294225 107294262 -14549594 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1403 218 311 0 13 chr11 107294568 107294643 -14549213 + ID2 SINE ID 1 74 -9 9 1403 311 326 0 10 chr11 107295101 107295200 -14548656 - MLT1A1 LTR MaLR -16 392 295 9 1403 342 197 49 0 chr11 107295233 107295294 -14548562 - PB1D7 SINE Alu -56 64 1 9 1403 1238 41 0 0 chr11 107295329 107295475 -14548381 + B1_Mm SINE Alu 2 147 0 9 1403 355 116 0 31 chr11 107295536 107295640 -14548216 + B2_Mm2 SINE B2 47 183 -12 9 1403 219 36 0 0 chr11 107295640 107295668 -14548188 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1403 393 102 0 0 chr11 107295730 107295789 -14548067 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 1403 632 231 155 6 chr11 107295815 107295976 -14547880 + B3 SINE B2 2 186 -30 9 1403 225 0 0 0 chr11 107295976 107296001 -14547855 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1403 551 269 65 49 chr11 107296001 107296023 -14547833 + B2_Mm2 SINE B2 167 188 -7 9 1403 378 0 0 0 chr11 107296100 107296142 -14547714 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1403 766 135 15 38 chr11 107296143 107296274 -14547582 + B1_Mur3 SINE Alu 22 149 0 9 1403 2552 71 6 12 chr11 107296343 107296672 -14547184 + ORR1A2 LTR MaLR 1 327 0 9 1403 268 304 101 54 chr11 107296750 107297028 -14546828 - L5 LINE RTE -16 2249 1959 9 1403 230 217 40 68 chr11 107297655 107297729 -14546127 - Tigger7 DNA MER2_type -32 2459 2388 9 1403 941 304 77 34 chr11 107297722 107298046 -14545810 - Tigger7 DNA MER2_type -2153 338 1 9 1403 189 154 0 0 chr11 107298543 107298582 -14545274 + A-rich Low_complexity Low_complexity 1 39 0 9 1403 592 268 83 11 chr11 107298701 107298882 -14544974 + B3A SINE B2 1 194 -4 9 1403 372 93 40 0 chr11 107298907 107298982 -14544874 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1403 846 247 152 22 chr11 107299007 107299330 -14544526 + L1MB8 LINE L1 5308 5672 -506 9 1403 271 64 0 21 chr11 107299333 107299381 -14544475 + B1_Mur4 SINE Alu 103 149 -1 9 1403 183 42 0 0 chr11 107299404 107299428 -14544428 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1403 21 36 0 0 chr11 107299523 107299551 -14544305 + AT_rich Low_complexity Low_complexity 1 28 0 9 1403 1325 176 151 16 chr11 107299631 107299943 -14543913 - MTD LTR MaLR -5 414 61 9 1403 235 56 0 100 chr11 107299953 107299993 -14543863 + L1M4 LINE L1 5881 5916 -268 9 1403 294 259 170 10 chr11 107299995 107300149 -14543707 + L1MB8 LINE L1 5961 6137 -47 9 1403 216 337 0 115 chr11 107300257 107300284 -14543572 + B4 SINE B4 64 78 -214 9 1403 290 304 117 10 chr11 107300284 107300387 -14543469 + B1F1 SINE Alu 1 114 -35 9 1403 378 255 0 25 chr11 107300421 107300582 -14543274 + GA-rich Low_complexity Low_complexity 3 159 0 9 1403 679 283 75 0 chr11 107301231 107301404 -14542452 - ID_B1 SINE B4 -7 217 32 9 1403 675 197 17 0 chr11 107301485 107301602 -14542254 - PB1D9 SINE Alu -1 119 1 9 1403 441 72 11 67 chr11 107301636 107301725 -14542131 + (TTA)n Simple_repeat Simple_repeat 1 84 0 9 1403 305 263 53 0 chr11 107301745 107301821 -14542035 - RSINE1 SINE B4 -58 107 28 9 1403 1436 67 17 0 chr11 107301843 107302022 -14541834 - B2_Mm2 SINE B2 -13 182 1 9 1403 344 305 76 0 chr11 107302556 107302687 -14541169 - MTE2a LTR MaLR -35 344 204 9 1403 1597 42 5 0 chr11 107302690 107302882 -14540974 + B2_Mm1t SINE B2 1 193 0 9 1403 198 0 0 0 chr11 107302906 107302928 -14540928 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1403 281 26 0 26 chr11 107302934 107302973 -14540883 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 9 1403 669 176 99 0 chr11 107303028 107303159 -14540697 + B1_Mur4 SINE Alu 2 145 -5 9 1403 267 292 0 0 chr11 107303178 107303250 -14540606 + (TA)n Simple_repeat Simple_repeat 2 73 0 9 1403 585 131 80 10 chr11 107303251 107303351 -14540505 - B1_Mur2 SINE Alu -2 147 41 9 1403 231 224 103 0 chr11 107303306 107303364 -14540492 - 4.5SRNA scRNA scRNA -6 88 25 9 1403 309 226 219 59 chr11 107303378 107303547 -14540309 - B3A SINE B2 -1 197 2 9 1403 508 292 23 16 chr11 107303552 107303732 -14540124 - MTE2a LTR MaLR -217 202 19 9 1403 1038 218 163 40 chr11 107303753 107304078 -14539778 - ORR1D2 LTR MaLR 0 370 6 9 1403 483 250 31 44 chr11 107304964 107305146 -14538710 - ORR1E LTR MaLR -121 238 45 9 1403 664 243 64 45 chr11 107305347 107305567 -14538289 + ID_B1 SINE B4 1 224 0 9 1403 281 267 143 48 chr11 107305636 107305762 -14538094 + MER58A DNA MER1_type 87 224 0 9 1403 1225 95 15 40 chr11 107305800 107305998 -14537858 - B2_Mm2 SINE B2 -1 194 2 9 1403 463 226 9 19 chr11 107306028 107306136 -14537720 - B1F SINE Alu 0 149 43 9 1403 340 286 83 0 chr11 107306232 107306316 -14537540 - B1F2 SINE Alu -52 97 7 9 1403 755 213 15 0 chr11 107306357 107306493 -14537363 - B1_Mur1 SINE Alu -4 145 8 9 1403 812 233 72 76 chr11 107306519 107306770 -14537086 - B4A SINE B4 -42 250 1 9 1403 967 206 30 36 chr11 107306805 107307056 -14536800 + ORR1D1 LTR MaLR 114 374 0 9 1403 367 225 0 59 chr11 107307056 107307125 -14536731 + ID_B1 SINE B4 159 222 -2 9 1403 1135 169 19 24 chr11 107307137 107307349 -14536507 + B3 SINE B2 1 211 -5 9 1403 1082 79 0 7 chr11 107307523 107307664 -14536192 + B1_Mm SINE Alu 2 141 -6 9 1403 456 19 0 0 chr11 107307667 107307720 -14536136 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 9 1403 254 200 46 0 chr11 107307749 107307814 -14536042 + (TA)n Simple_repeat Simple_repeat 1 68 0 9 1403 217 167 18 18 chr11 107307849 107307904 -14535952 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 9 1403 234 0 0 0 chr11 107307906 107307932 -14535924 + (GA)n Simple_repeat Simple_repeat 2 27 0 9 1403 586 224 133 13 chr11 107308743 107308901 -14534955 - B4A SINE B4 0 292 116 9 1403 723 210 84 0 chr11 107309171 107309314 -14534542 + B3 SINE B2 57 211 -5 9 1403 387 221 46 11 chr11 107309329 107309416 -14534440 - B4A SINE B4 -194 98 9 9 1403 1098 43 0 7 chr11 107309614 107309753 -14534103 + B1_Mus2 SINE Alu 10 147 0 9 1403 369 0 0 0 chr11 107309840 107309881 -14533975 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1403 1139 212 133 42 chr11 107309998 107310358 -14533498 + RMER10B LTR ERVL 2 394 -4 9 1403 475 235 94 38 chr11 107311044 107311150 -14532706 + B3A SINE B2 2 113 -85 9 1403 367 262 58 93 chr11 107311128 107311267 -14532589 + B1F1 SINE Alu 16 149 0 9 1403 483 246 41 8 chr11 107311785 107311908 -14531948 + B1F SINE Alu 1 127 -22 1 1403 183 0 50 75 chr11 107311908 107311948 -14531908 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1403 1028 233 0 5 chr11 107311959 107312175 -14531681 + B3 SINE B2 2 216 0 1 1403 1181 62 7 0 chr11 107312214 107312359 -14531497 + B1_Mus2 SINE Alu 2 147 0 1 1403 296 230 40 13 chr11 107312874 107312939 -14530917 + PB1 SINE Alu 20 86 -41 1 1403 558 206 70 10 chr11 107312939 107313082 -14530774 + B1_Mur4 SINE Alu 1 149 -1 1 1403 553 274 0 59 chr11 107313128 107313264 -14530592 + RSINE1 SINE B4 3 130 -35 1 1403 225 203 246 15 chr11 107313322 107313387 -14530469 + ID4_ SINE ID 1 80 -3 1 1403 485 201 103 45 chr11 107313437 107313593 -14530263 + Lx7 LINE L1 7199 7363 -333 1 1403 259 271 91 51 chr11 107313590 107313765 -14530091 + Lx7 LINE L1 7501 7682 -14 1 1403 280 180 0 0 chr11 107314217 107314273 -14529583 + B2_Mm2 SINE B2 1 56 -160 1 1403 246 282 41 27 chr11 107314257 107314330 -14529526 + MTEb LTR MaLR 288 361 -18 1 1403 243 226 136 45 chr11 107314739 107314827 -14529029 - B4A SINE B4 -46 246 151 1 1403 959 73 71 28 chr11 107314899 107315040 -14528816 - B1_Mus1 SINE Alu 0 148 2 1 1403 215 253 0 248 chr11 107315084 107315189 -14528667 + ID4_ SINE ID 2 80 -3 1 1403 245 204 0 0 chr11 107315611 107315655 -14528201 - PB1D10 SINE Alu -7 110 67 1 1403 840 154 272 0 chr11 107315686 107315855 -14528001 - B3 SINE B2 -1 215 1 1 1403 189 0 0 0 chr11 107315869 107315890 -14527966 + (TGG)n Simple_repeat Simple_repeat 2 22 0 1 1403 340 133 38 62 chr11 107315898 107315978 -14527878 - PB1D9 SINE Alu 0 120 43 1 1403 266 244 0 118 chr11 107316847 107316940 -14526916 + PB1D10 SINE Alu 29 110 -7 1 1403 28 71 0 0 chr11 107317018 107317074 -14526782 + AT_rich Low_complexity Low_complexity 1 56 0 1 1403 404 202 11 22 chr11 107317150 107317241 -14526615 + PB1D7 SINE Alu 31 120 0 1 1403 230 250 267 9 chr11 107317241 107317255 -14526601 + B4A SINE B4 116 247 -45 1 1403 1247 47 0 0 chr11 107317300 107317448 -14526408 + B1_Mus1 SINE Alu 1 148 0 1 1403 228 35 0 0 chr11 107317451 107317480 -14526376 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1403 1315 96 6 0 chr11 107317515 107317692 -14526164 + B2_Mm1a SINE B2 2 179 -14 1 1403 650 173 102 29 chr11 107317752 107317889 -14525967 + B1_Mus1 SINE Alu 1 147 -1 1 1403 398 315 6 11 chr11 107318011 107318142 -14525714 + (TG)n Simple_repeat Simple_repeat 1 131 0 1 1403 3627 142 106 21 chr11 107318142 107318839 -14525017 - RMER6A LTR ERVK 0 756 1 1 1403 398 315 6 11 chr11 107318839 107318887 -14524969 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1403 231 152 0 0 chr11 107318926 107318972 -14524884 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1403 535 240 189 38 chr11 107319289 107319501 -14524355 + B4A SINE B4 48 291 -1 1 1403 324 227 79 13 chr11 107319500 107319576 -14524280 + PB1D10 SINE Alu 3 83 -34 1 1403 264 100 0 0 chr11 107320679 107320719 -14523137 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1 1403 865 175 0 14 chr11 107320719 107320858 -14522998 - B1_Mur4 SINE Alu -13 137 1 1 1403 549 286 64 50 chr11 107320858 107320921 -14522935 - ID_B1 SINE B4 -13 211 7 1 1403 1133 102 0 0 chr11 107320945 107321092 -14522764 - B1_Mus2 SINE Alu 0 147 1 1 1403 229 306 111 10 chr11 107321280 107321379 -14522477 + L2b LINE L2 3263 3371 -4 1 1403 521 326 53 65 chr11 107321541 107321882 -14521974 + MLT1E LTR MaLR 223 559 -94 1 1403 1182 112 0 6 chr11 107321996 107322166 -14521690 - B2_Mm2 SINE B2 -26 169 1 1 1403 565 168 204 0 chr11 107322236 107322349 -14521507 - B1_Mur2 SINE Alu -9 140 5 1 1403 598 221 23 0 chr11 107322389 107322520 -14521336 + B1_Mus1 SINE Alu 6 139 -9 1 1403 281 315 12 121 chr11 107322561 107322727 -14521129 - B3 SINE B2 -25 191 44 1 1403 316 191 27 68 chr11 107322990 107323063 -14520793 - B3A SINE B2 -128 70 1 1 1403 227 48 0 87 chr11 107323380 107323406 -14520450 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1403 1199 50 0 0 chr11 107323406 107323546 -14520310 + B1_Mm SINE Alu 1 140 -7 1 1403 227 48 0 87 chr11 107323546 107323565 -14520291 + (A)n Simple_repeat Simple_repeat 1 16 0 1 1403 652 249 48 19 chr11 107323885 107324094 -14519762 + B3 SINE B2 1 215 -1 1 1403 1222 61 0 0 chr11 107324121 107324268 -14519588 + B1_Mus1 SINE Alu 2 148 0 1 1403 1036 90 0 33 chr11 107324407 107324557 -14519299 + B2_Mm1t SINE B2 35 179 -14 1 1403 240 86 0 54 chr11 107324622 107324659 -14519197 + B2_Mm2 SINE B2 47 81 -114 1 1403 1212 48 0 0 chr11 107325146 107325292 -14518564 + B1_Mus2 SINE Alu 2 147 0 1 1403 189 0 0 0 chr11 107325292 107325313 -14518543 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1403 885 117 0 0 chr11 107325327 107325455 -14518401 + B1_Mur3 SINE Alu 22 149 0 1 1403 228 184 102 0 chr11 107325994 107326043 -14517813 - PB1D10 SINE Alu -1 116 63 1 1403 642 270 54 89 chr11 107326051 107326275 -14517581 - B3 SINE B2 0 216 1 1 1403 444 317 33 52 chr11 107326275 107326327 -14517529 - ID_B1 SINE B4 -96 128 83 1 1403 258 32 0 0 chr11 107326327 107326358 -14517498 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1 1403 444 317 33 52 chr11 107326358 107326432 -14517424 - ID SINE ID -142 82 5 1 1403 434 260 37 89 chr11 107326951 107327035 -14516821 + RSINE1 SINE B4 36 116 -49 1 1403 1665 32 0 0 chr11 107327035 107327223 -14516633 + B2_Mm1t SINE B2 1 188 -5 1 1403 434 260 37 89 chr11 107327223 107327273 -14516583 + RSINE1 SINE B4 117 163 -2 1 1403 229 200 0 0 chr11 107327340 107327395 -14516461 + MamGypLTR2 LTR Gypsy 195 249 -940 1 1403 610 276 21 70 chr11 107327437 107327624 -14516232 + B4 SINE B4 115 292 0 1 1403 329 0 24 0 chr11 107327702 107327743 -14516113 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1403 211 216 0 73 chr11 107327745 107327800 -14516056 - ID2 SINE ID -21 62 12 1 1403 183 42 0 0 chr11 107327951 107327975 -14515881 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1403 202 346 0 0 chr11 107328088 107328140 -14515716 + MIRc SINE MIR 63 114 -154 1 1403 452 181 0 46 chr11 107328180 107328267 -14515589 - ID_B1 SINE B4 -35 189 107 1 1403 341 340 0 10 chr11 107328267 107328280 -14515576 - B1F1 SINE Alu -37 111 13 1 1403 273 250 40 0 chr11 107328731 107328807 -14515049 + ID4_ SINE ID 3 81 -2 1 1403 27 0 0 0 chr11 107328811 107328838 -14515018 + AT_rich Low_complexity Low_complexity 1 27 0 1 1403 470 198 39 29 chr11 107328971 107329075 -14514781 + PB1D9 SINE Alu 1 105 -15 1 1403 885 190 0 0 chr11 107329075 107329254 -14514602 + GA-rich Low_complexity Low_complexity 2 180 0 1 1403 556 179 40 0 chr11 107329429 107329548 -14514308 + B1_Mur2 SINE Alu 2 139 -10 1 1403 234 0 0 0 chr11 107332577 107332603 -14511253 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1403 315 0 0 0 chr11 107332603 107332637 -14511219 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1403 246 32 0 0 chr11 107332902 107332933 -14510923 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1403 243 0 0 0 chr11 107333040 107333067 -14510789 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1403 491 16 0 31 chr11 107333297 107333362 -14510494 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1 1403 902 151 0 33 chr11 107333452 107333603 -14510253 - B1_Mur4 SINE Alu 0 150 5 1 1403 646 281 112 10 chr11 107333733 107333938 -14509918 - MER2 DNA MER2_type -119 226 1 1 1403 383 309 22 22 chr11 107333940 107334079 -14509777 - L1MEc LINE L1 -4109 2291 2153 1 1403 278 106 21 0 chr11 107334741 107334788 -14509068 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 1 1403 759 157 99 35 chr11 107334847 107334999 -14508857 + B2_Mm2 SINE B2 10 169 -26 1 1403 1202 48 0 7 chr11 107334999 107335147 -14508709 + B1_Mm SINE Alu 1 147 0 1 1403 759 157 99 35 chr11 107335147 107335166 -14508690 + B2_Mm2 SINE B2 170 192 -3 1 1403 1167 75 0 0 chr11 107335177 107335324 -14508532 + B1_Mus1 SINE Alu 2 148 0 1 1403 180 0 0 0 chr11 107335324 107335344 -14508512 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1403 614 288 26 7 chr11 107335877 107336031 -14507825 + B3A SINE B2 1 157 -41 1 1403 1271 88 16 42 chr11 107336072 107336262 -14507594 + B2_Mm2 SINE B2 2 186 -9 1 1403 979 80 152 0 chr11 107336262 107336413 -14507443 - B2_Mm2 SINE B2 -21 174 1 1 1403 237 265 176 42 chr11 107336415 107336429 -14507427 - YREP_Mm Unknown Unknown -1453 359 344 1 1403 183 80 0 0 chr11 107336429 107336454 -14507402 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1 1403 237 265 176 42 chr11 107336454 107336581 -14507275 - YREP_Mm Unknown Unknown -1469 343 199 1 1403 596 209 91 23 chr11 107336481 107336613 -14507243 + B1_Mur1 SINE Alu 9 149 0 1 1403 250 186 0 0 chr11 107336699 107336742 -14507114 - L1MD3 LINE L1 -516 7479 7437 1 1403 738 243 95 54 chr11 107336881 107337103 -14506753 - B4 SINE B4 -61 231 1 1 1403 370 222 65 22 chr11 107337110 107337202 -14506654 - BC1_Mm scRNA scRNA -55 97 2 1 1403 1006 187 27 11 chr11 107337246 107337430 -14506426 - B3 SINE B2 0 216 30 1 1403 1545 43 21 0 chr11 107337463 107337650 -14506206 - B2_Mm1t SINE B2 -1 192 2 1 1403 974 129 0 0 chr11 107337652 107337792 -14506064 - B1_Mus1 SINE Alu -3 145 6 1 1403 226 111 0 27 chr11 107337761 107337798 -14506058 - MT2C_Mm LTR ERVL -235 240 205 1 1403 1001 231 5 23 chr11 107337828 107338045 -14505811 + B3 SINE B2 1 213 -3 1 1403 951 83 105 0 chr11 107338050 107338183 -14505673 + B1_Mm SINE Alu 1 147 0 1 1403 40 21 0 0 chr11 107338183 107338230 -14505626 + AT_rich Low_complexity Low_complexity 1 47 0 1 1403 1361 82 38 6 chr11 107338231 107338414 -14505442 + B2_Mm2 SINE B2 1 189 -6 1 1403 444 305 76 0 chr11 107338423 107338554 -14505302 + MLT1D LTR MaLR 1 141 -364 1 1403 816 179 143 39 chr11 107338600 107338803 -14505053 - URR1A DNA MER1_type -2 224 1 1 1403 1347 87 11 11 chr11 107339034 107339219 -14504637 - B2_Mm2 SINE B2 -9 186 2 1 1403 799 159 0 31 chr11 107339221 107339351 -14504505 - B1_Mur1 SINE Alu 0 149 24 1 1403 221 301 36 186 chr11 107339226 107339364 -14504492 - B4A SINE B4 -69 223 110 1 1403 1448 78 5 0 chr11 107339364 107339556 -14504300 + B2_Mm1a SINE B2 1 193 0 1 1403 221 301 36 186 chr11 107339556 107339584 -14504272 - B4A SINE B4 -183 109 82 1 1403 626 241 9 3 chr11 107339700 107339831 -14504025 + RSINE1 SINE B4 3 135 -30 1 1403 3111 40 0 8 chr11 107339967 107340344 -14503512 + L1Md_F2 LINE L1 6200 6573 -9 1 1403 201 282 42 37 chr11 107340456 107340542 -14503314 - MIRm SINE MIR -102 166 74 1 1403 356 294 69 0 chr11 107341620 107341656 -14502200 - ID_B1 SINE B4 -102 122 14 1 1403 411 212 0 0 chr11 107341656 107341722 -14502134 - ID4 SINE ID -4 79 14 1 1403 204 286 81 81 chr11 107341833 107341932 -14501924 - MIRb SINE MIR -144 124 26 1 1403 396 181 544 29 chr11 107342120 107342258 -14501598 - B3 SINE B2 -7 209 1 1 1403 248 276 0 0 chr11 107342474 107342532 -14501324 + ID_B1 SINE B4 83 140 -84 1 1403 281 173 0 55 chr11 107342483 107342538 -14501318 + B1F SINE Alu 11 62 -87 1 1403 290 79 0 0 chr11 107342879 107342917 -14500939 - B1_Mur4 SINE Alu -112 38 1 1 1403 236 197 161 16 chr11 107343031 107343093 -14500763 - ID4_ SINE ID -9 74 4 1 1403 337 240 27 0 chr11 107343502 107343577 -14500279 + B3A SINE B2 15 91 -107 1 1403 264 0 0 0 chr11 107344249 107344279 -14499577 + ORR1C2 LTR MaLR 1 30 -354 1 1403 674 84 17 7 chr11 107344280 107344394 -14499462 + B1_Mus1 SINE Alu 2 120 0 1 1403 225 0 0 0 chr11 107344394 107344419 -14499437 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1403 327 154 0 0 chr11 107344420 107344472 -14499384 + ORR1C2 LTR MaLR 12 63 -321 1 1403 1105 70 0 0 chr11 107344496 107344638 -14499218 - B1_Mus1 SINE Alu -1 147 6 1 1403 1361 175 30 30 chr11 107344622 107344686 -14499170 + ORR1C2 LTR MaLR 120 177 -207 1 1403 195 69 0 0 chr11 107344686 107344715 -14499141 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1403 1361 175 30 30 chr11 107344715 107344915 -14498941 + ORR1C2 LTR MaLR 178 384 0 1 1403 382 311 0 10 chr11 107344931 107345035 -14498821 + PB1D7 SINE Alu 17 119 -1 1 1403 248 200 15 0 chr11 107345452 107345517 -14498339 + CT-rich Low_complexity Low_complexity 1 66 0 1 1403 292 362 84 6 chr11 107346001 107346179 -14497677 - Charlie19a DNA Charlie -110 276 85 1 1403 716 173 82 8 chr11 107346183 107346317 -14497539 + B1_Mus1 SINE Alu 4 147 -1 1 1403 451 250 191 21 chr11 107346333 107346504 -14497352 + ID_B1 SINE B4 5 211 -13 1 1403 315 104 0 0 chr11 107346504 107346552 -14497304 + (TGAG)n Simple_repeat Simple_repeat 4 51 0 1 1403 451 250 191 21 chr11 107346552 107346568 -14497288 + ID_B1 SINE B4 212 224 0 1 1403 771 231 6 0 chr11 107347185 107347341 -14496515 + RSINE1 SINE B4 2 158 -7 1 1403 616 220 14 28 chr11 107347515 107347660 -14496196 + B1_Mur1 SINE Alu 2 144 -5 1 175 628 257 20 14 chr11 107347923 107348069 -14495787 - B1_Mur1 SINE Alu -1 148 2 1 1404 189 0 0 0 chr11 107348102 107348123 -14495733 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1404 713 185 9 167 chr11 107348263 107348425 -14495431 - B2_Mm2 SINE B2 -8 187 48 1 1404 1624 31 5 5 chr11 107348425 107348617 -14495239 + B2_Mm1a SINE B2 2 193 0 1 1404 713 185 9 167 chr11 107348617 107348675 -14495181 - B2_Mm2 SINE B2 -148 47 2 1 1404 225 139 0 0 chr11 107348750 107348793 -14495063 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 1 1404 280 307 0 26 chr11 107348804 107348881 -14494975 + RSINE1 SINE B4 6 80 -85 1 1404 1116 78 149 6 chr11 107349124 107349292 -14494564 + B2_Mm2 SINE B2 1 192 -3 1 1404 1164 55 0 14 chr11 107349300 107349447 -14494409 + B1_Mus2 SINE Alu 2 146 -1 1 1404 521 290 80 0 chr11 107349917 107350093 -14493763 - B3A SINE B2 -7 191 2 1 1404 252 0 0 0 chr11 107350658 107350686 -14493170 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1404 724 169 8 0 chr11 107350710 107350828 -14493028 - PB1D9 SINE Alu 0 120 2 1 1404 1181 75 0 0 chr11 107351336 107351482 -14492374 - B1_Mm SINE Alu 0 147 2 1 1404 1377 71 33 0 chr11 107351486 107351670 -14492186 - B2_Mm2 SINE B2 -4 191 2 1 1404 469 230 44 9 chr11 107351718 107351832 -14492024 - B1_Mur3 SINE Alu -6 143 26 1 1404 382 125 0 0 chr11 107351842 107351898 -14491958 + B1_Mm SINE Alu 88 143 -4 1 1404 330 26 0 0 chr11 107351908 107351947 -14491909 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1404 183 42 0 0 chr11 107352019 107352043 -14491813 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 1 1404 1154 68 7 0 chr11 107352043 107352190 -14491666 - B1_Mus1 SINE Alu 0 148 1 1 1404 1850 74 64 7 chr11 107352190 107352501 -14491355 - MTB LTR MaLR -5 395 1 1 1404 751 194 43 0 chr11 107352546 107352685 -14491171 - B1_Mur4 SINE Alu -1 149 5 1 1404 261 57 0 0 chr11 107352708 107352743 -14491113 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1404 577 319 18 0 chr11 107352807 107352973 -14490883 - B3A SINE B2 -29 169 1 1 1404 217 316 38 0 chr11 107353505 107353584 -14490272 + ID4 SINE ID 2 83 0 1 1404 449 276 55 0 chr11 107353800 107353927 -14489929 - ID_B1 SINE B4 0 224 91 1 1404 1138 95 0 25 chr11 107353951 107354113 -14489743 + B2_Mm2 SINE B2 2 159 -36 1 1404 180 111 0 0 chr11 107354114 107354141 -14489715 + (CAAT)n Simple_repeat Simple_repeat 3 29 0 1 1404 185 0 0 39 chr11 107354143 107354169 -14489687 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1404 403 295 11 0 chr11 107354180 107354275 -14489581 + B1F2 SINE Alu 47 142 -7 1 1404 682 120 40 0 chr11 107354399 107354499 -14489357 - B1_Mus2 SINE Alu -21 126 23 1 1404 478 214 45 0 chr11 107354507 107354596 -14489260 - B1F2 SINE Alu -43 106 14 1 1404 350 284 58 10 chr11 107354596 107354610 -14489246 - ID_B1 SINE B4 -40 184 77 1 1404 192 40 0 0 chr11 107355822 107355847 -14488009 + (CACG)n Simple_repeat Simple_repeat 1 25 0 1 1404 181 267 61 114 chr11 107356100 107356214 -14487642 + MIR SINE MIR 8 115 -147 1 1404 411 275 60 4 chr11 107356221 107356349 -14487507 - B1F2 SINE Alu -12 136 8 1 1404 277 181 253 46 chr11 107356357 107356444 -14487412 - B3 SINE B2 0 216 112 1 1404 603 78 0 0 chr11 107356458 107356548 -14487308 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1404 225 0 0 0 chr11 107356548 107356572 -14487284 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1404 768 194 0 23 chr11 107356675 107356807 -14487049 + B3 SINE B2 2 130 -86 1 1404 31 26 0 0 chr11 107357265 107357303 -14486553 + AT_rich Low_complexity Low_complexity 1 38 0 1 1404 271 285 143 24 chr11 107357522 107357648 -14486208 + ID_B1 SINE B4 72 212 -12 1 1404 1092 75 0 45 chr11 107357650 107357804 -14486052 - B1_Mus1 SINE Alu -1 147 1 1 1404 971 98 16 4 chr11 107357813 107357953 -14485903 + B2_Mm1t SINE B2 43 179 -14 1 1404 394 144 0 5 chr11 107357966 107358031 -14485825 + B2_Mm2 SINE B2 47 109 -107 1 1404 228 100 0 0 chr11 107358043 107358083 -14485773 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 1 1404 306 279 37 0 chr11 107358349 107358449 -14485407 + ID4_ SINE ID 2 104 -48 1 1404 240 111 0 0 chr11 107359424 107359469 -14484387 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1404 763 43 0 0 chr11 107359620 107359712 -14484144 + B2_Mm2 SINE B2 1 92 -103 1 1404 263 230 13 39 chr11 107359753 107359830 -14484026 - ID SINE ID -149 75 1 1 1404 242 295 64 37 chr11 107359896 107360005 -14483851 - PB1D7 SINE Alu -8 112 1 1 1404 372 239 89 5 chr11 107360236 107360371 -14483485 - B1F SINE Alu 0 149 12 1 1404 1434 55 16 21 chr11 107360529 107360716 -14483140 + B2_Mm2 SINE B2 1 186 -9 1 1404 1204 54 0 0 chr11 107360724 107360871 -14482985 + B1_Mus1 SINE Alu 2 148 0 1 1404 385 204 109 30 chr11 107361238 107361339 -14482517 + B1_Mus2 SINE Alu 1 109 -38 1 1404 996 214 50 0 chr11 107361395 107361596 -14482260 - B3 SINE B2 0 216 6 1 1404 1073 104 6 24 chr11 107361614 107361782 -14482074 + L1_Mus4 LINE L1 6454 6618 -18 1 1404 343 247 14 0 chr11 107362011 107362084 -14481772 + ID4 SINE ID 6 79 -4 1 1404 753 90 189 0 chr11 107362301 107362423 -14481433 - B1_Mus1 SINE Alu -2 146 2 1 1404 250 265 15 0 chr11 107362634 107362702 -14481154 - B4 SINE B4 -219 73 5 1 1404 738 218 111 11 chr11 107362718 107362908 -14480948 - B3 SINE B2 -5 211 3 1 1404 219 340 0 0 chr11 107362935 107362985 -14480871 - RSINE1 SINE B4 -24 141 92 1 1404 229 222 147 40 chr11 107362969 107363044 -14480812 + RSINE1 SINE B4 83 165 0 1 1404 333 286 70 23 chr11 107363534 107363663 -14480193 + ID_B1 SINE B4 84 218 -6 1 1404 378 168 126 26 chr11 107363713 107363829 -14480027 - RSINE1 SINE B4 -38 127 1 1 1404 641 88 10 0 chr11 107363861 107363963 -14479893 + (CA)n Simple_repeat Simple_repeat 1 103 0 1 1404 207 100 0 0 chr11 107364020 107364050 -14479806 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1404 892 36 9 0 chr11 107364053 107364164 -14479692 - B1_Mus1 SINE Alu 0 148 37 1 1404 1488 53 0 55 chr11 107364244 107364445 -14479411 - B2_Mm1a SINE B2 -2 191 2 1 1404 321 323 105 67 chr11 107364777 107365016 -14478840 + LTR16A LTR ERVL 199 446 -5 1 1404 595 316 36 36 chr11 107365400 107365623 -14478233 - MT2A LTR ERVL -134 399 177 1 1404 261 32 0 0 chr11 107365623 107365654 -14478202 + PB1D9 SINE Alu 85 115 -5 1 1404 341 267 11 43 chr11 107365742 107365836 -14478020 + B1F1 SINE Alu 2 92 -57 1 1404 234 0 0 0 chr11 107365939 107365965 -14477891 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1404 1241 34 0 0 chr11 107365965 107366111 -14477745 - B1_Mm SINE Alu 0 147 2 1 1404 1175 55 0 20 chr11 107366130 107366279 -14477577 - B1_Mus2 SINE Alu 0 147 2 1 1404 1139 179 24 10 chr11 107366285 107366494 -14477362 - B3 SINE B2 -4 212 1 1 1404 1534 63 16 0 chr11 107366681 107366872 -14476984 - B2_Mm2 SINE B2 -1 194 1 1 1404 627 226 50 62 chr11 107367036 107367215 -14476641 + B3 SINE B2 40 216 0 1 1404 950 51 0 0 chr11 107367219 107367336 -14476520 + B2_Mm2 SINE B2 1 117 -78 1 1404 411 283 18 62 chr11 107367341 107367454 -14476402 - RSINE1 SINE B4 -12 153 46 1 1404 433 284 7 60 chr11 107367576 107367726 -14476130 - ID_B1 SINE B4 -5 219 78 1 1404 207 0 0 0 chr11 107368110 107368133 -14475723 + (GGA)n Simple_repeat Simple_repeat 2 24 0 1 1404 400 302 45 45 chr11 107368146 107368216 -14475640 - ID_B1 SINE B4 -14 210 140 1 1404 2040 178 106 55 chr11 107368216 107368377 -14475479 + RMER15 LTR ERVL 1 154 -421 1 1404 1646 42 0 0 chr11 107368377 107368567 -14475289 + B2_Mm1t SINE B2 2 191 -2 1 1404 2040 178 106 55 chr11 107368567 107368599 -14475257 + RMER15 LTR ERVL 155 187 -388 1 1404 1451 84 5 0 chr11 107368599 107368789 -14475067 + B2_Mm1t SINE B2 3 193 0 1 1404 2040 178 106 55 chr11 107368789 107369009 -14474847 + RMER15 LTR ERVL 188 437 -138 1 1404 1193 41 0 40 chr11 107369009 107369161 -14474695 + B1_Mm SINE Alu 2 147 0 1 1404 2040 178 106 55 chr11 107369161 107369292 -14474564 + RMER15 LTR ERVL 438 575 0 1 1404 400 302 45 45 chr11 107369292 107369348 -14474508 - ID_B1 SINE B4 -85 139 84 1 1404 447 154 29 3 chr11 107369348 107369430 -14474426 + RMER17C LTR ERVK 1 75 -335 1 1404 599 14 0 13 chr11 107369435 107369510 -14474346 + B1_Mus2 SINE Alu 74 147 0 1 1404 1415 153 50 31 chr11 107369527 107369850 -14474006 + RMER17C LTR ERVK 69 397 -13 1 1404 940 24 125 59 chr11 107369865 107370001 -14473855 - B1_Mus2 SINE Alu -2 145 1 1 1404 205 77 0 71 chr11 107370103 107370145 -14473711 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 1 1404 281 246 25 98 chr11 107370154 107370276 -14473580 - PB1D10 SINE Alu 0 117 5 1 1404 311 277 21 0 chr11 107370280 107370374 -14473482 - MLT1B LTR MaLR -280 110 15 1 1404 2334 170 150 22 chr11 107370350 107370850 -14473006 - RMER15 LTR ERVL -11 564 1 1 1404 1373 194 54 22 chr11 107371183 107371294 -14472562 - RMER10B LTR ERVL -72 326 213 1 1404 477 0 0 0 chr11 107371294 107371347 -14472509 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1404 1373 194 54 22 chr11 107371347 107371551 -14472305 - RMER10B LTR ERVL -186 212 1 1 1404 412 238 0 12 chr11 107371678 107371759 -14472097 + ID_B1 SINE B4 134 213 -11 1 1404 1129 58 0 0 chr11 107372977 107373115 -14470741 + B1_Mm SINE Alu 1 138 -9 1 1404 249 259 56 0 chr11 107373138 107373192 -14470664 + ID4_ SINE ID 6 62 -21 1 1404 183 42 0 0 chr11 107373238 107373262 -14470594 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1 1404 338 310 60 0 chr11 107373272 107373372 -14470484 - RSINE1 SINE B4 -24 141 36 1 1404 584 190 90 14 chr11 107373393 107373537 -14470319 - B2_Mm2 SINE B2 -14 181 27 1 1404 252 86 0 0 chr11 107373537 107373572 -14470284 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1404 1092 62 0 59 chr11 107373572 107373725 -14470131 - B1_Mus2 SINE Alu 0 147 4 1 1404 251 125 0 0 chr11 107373727 107373767 -14470089 - B2_Mm2 SINE B2 -155 40 1 1 1404 402 21 0 0 chr11 107373841 107373888 -14469968 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1404 855 228 33 79 chr11 107373888 107374102 -14469754 + ID_B1 SINE B4 8 211 -13 1 1404 297 0 0 0 chr11 107374102 107374135 -14469721 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1404 507 101 0 0 chr11 107374728 107374807 -14469049 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1404 406 224 0 0 chr11 107375091 107375167 -14468689 + B1F2 SINE Alu 34 109 -40 1 1404 194 128 26 0 chr11 107375180 107375219 -14468637 + GA-rich Low_complexity Low_complexity 1 40 0 1 1404 276 200 23 12 chr11 107375233 107375319 -14468537 + GA-rich Low_complexity Low_complexity 1 87 0 1 1404 581 214 0 0 chr11 107375394 107375506 -14468350 - B1_Mur4 SINE Alu 0 150 39 1 1404 279 250 38 57 chr11 107375439 107375545 -14468311 - MT2B LTR ERVL -344 257 154 1 1404 1012 159 132 0 chr11 107375744 107375933 -14467923 + B3 SINE B2 2 215 -1 1 1404 203 189 0 0 chr11 107375934 107375971 -14467885 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 1404 243 0 0 0 chr11 107375972 107375999 -14467857 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1404 1094 59 0 15 chr11 107376001 107376138 -14467718 - B1_Mus1 SINE Alu -12 136 2 1 1404 487 243 176 16 chr11 107376229 107376417 -14467439 - ID_B1 SINE B4 -6 218 1 1 1404 651 148 14 9 chr11 107376436 107376555 -14467301 - B1_Mur2 SINE Alu 0 149 18 1 1404 301 234 25 38 chr11 107376617 107376697 -14467159 - L1MC1 LINE L1 -11 6322 6244 1 1404 675 111 32 0 chr11 107377072 107377131 -14466725 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1 1404 1206 90 90 0 chr11 107377131 107377309 -14466547 - B2_Mm2 SINE B2 -1 194 1 1 1404 675 111 32 0 chr11 107377309 107377375 -14466481 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 1 1404 220 173 19 19 chr11 107377410 107377463 -14466393 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1 1404 1733 21 0 0 chr11 107377614 107377807 -14466049 + B2_Mm1a SINE B2 1 193 0 1 1404 364 337 42 31 chr11 107377832 107378025 -14465831 + Lx8 LINE L1 7133 7327 -146 1 1404 448 234 45 27 chr11 107378075 107378185 -14465671 + PB1D10 SINE Alu 1 112 -5 1 1404 529 85 287 19 chr11 107378194 107378302 -14465554 + B1_Mus1 SINE Alu 10 146 -2 1 1404 194 0 0 37 chr11 107378303 107378330 -14465526 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1404 294 256 52 62 chr11 107378420 107378516 -14465340 + B3A SINE B2 1 95 -103 1 1404 220 196 0 0 chr11 107378516 107378533 -14465323 + A-rich Low_complexity Low_complexity 1 17 0 1 1404 834 172 28 0 chr11 107378533 107378678 -14465178 + B1_Mur2 SINE Alu 1 149 0 1 1404 220 196 0 0 chr11 107378678 107378706 -14465150 + A-rich Low_complexity Low_complexity 18 45 0 1 1404 27 0 0 0 chr11 107379265 107379292 -14464564 + AT_rich Low_complexity Low_complexity 1 27 0 1 1404 1269 27 0 0 chr11 107379292 107379439 -14464417 + B1_Mm SINE Alu 1 147 0 1 1404 1297 85 0 11 chr11 107379447 107379625 -14464231 - B2_Mm2 SINE B2 -14 181 6 1 1404 983 88 73 0 chr11 107379694 107379830 -14464026 - B1_Mus1 SINE Alu 0 148 3 1 1404 913 190 97 5 chr11 107379893 107380099 -14463757 + URR1B DNA MER1_type 1 225 0 1 1404 1219 61 0 0 chr11 107380731 107380878 -14462978 + B1_Mm SINE Alu 1 147 0 1 1404 224 137 20 0 chr11 107380999 107381050 -14462806 + GA-rich Low_complexity Low_complexity 1 52 0 1 1404 198 0 0 0 chr11 107381079 107381101 -14462755 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1 1404 323 156 12 34 chr11 107381142 107381208 -14462648 - B2_Mm2 SINE B2 -86 112 43 1 1404 1147 116 29 0 chr11 107381270 107381443 -14462413 - B2_Mm1t SINE B2 -14 179 2 1 1404 237 170 0 0 chr11 107381677 107381724 -14462132 + L1MB7 LINE L1 4980 5026 -1120 1 1404 189 94 0 0 chr11 107381741 107381773 -14462083 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1404 1158 62 7 0 chr11 107381775 107381921 -14461935 - B1_Mm SINE Alu 0 147 1 1 1404 24 32 0 0 chr11 107381926 107381957 -14461899 + AT_rich Low_complexity Low_complexity 1 31 0 1 1404 1023 134 7 7 chr11 107381990 107382140 -14461716 + B1_Mur4 SINE Alu 1 150 0 1 1404 422 257 218 60 chr11 107382141 107382393 -14461463 + L1MB7 LINE L1 5482 5773 -401 1 1404 253 239 90 0 chr11 107382706 107382773 -14461083 + L1MB7 LINE L1 5966 6038 -146 1 1404 228 214 0 0 chr11 107382816 107382872 -14460984 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1404 276 77 0 0 chr11 107382892 107382931 -14460925 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1404 529 231 70 63 chr11 107382949 107383092 -14460764 - RSINE1 SINE B4 -13 152 9 1 1404 308 284 11 22 chr11 107383141 107383231 -14460625 - B1F SINE Alu 0 149 61 1 1404 348 269 0 0 chr11 107383213 107383280 -14460576 - RSINE1 SINE B4 -96 69 3 1 1404 378 42 0 0 chr11 107383577 107383625 -14460231 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1404 351 343 123 46 chr11 107383630 107383890 -14459966 - B4 SINE B4 -4 288 9 1 1404 319 209 0 149 chr11 107383931 107384038 -14459818 - PB1D9 SINE Alu -7 113 23 1 1404 280 133 0 22 chr11 107384038 107384084 -14459772 - URR1B DNA MER1_type 0 225 181 1 1404 363 44 0 0 chr11 107384084 107384129 -14459727 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1404 1102 70 7 0 chr11 107384135 107384277 -14459579 - B2_Mm1t SINE B2 -22 171 29 1 1404 1118 37 0 0 chr11 107384276 107384407 -14459449 + B1_Mm SINE Alu 8 138 -9 1 1404 216 0 0 0 chr11 107384407 107384431 -14459425 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1404 927 162 137 6 chr11 107384460 107384628 -14459228 - URR1B DNA MER1_type -35 190 1 1 1404 792 199 73 18 chr11 107384697 107384861 -14458995 - B3 SINE B2 0 216 44 1 1404 297 128 0 0 chr11 107384865 107384912 -14458944 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1404 1147 95 0 0 chr11 107384912 107385059 -14458797 - B1_Mm SINE Alu 0 147 1 1 1404 363 243 0 0 chr11 107385094 107385164 -14458692 - ID4_ SINE ID -11 72 3 1 1404 342 211 95 66 chr11 107385166 107385303 -14458553 + L1MC4 LINE L1 7301 7441 -601 1 1404 562 200 0 9 chr11 107385734 107385840 -14458016 + B1_Mur1 SINE Alu 45 149 0 1 1404 333 262 114 15 chr11 107385870 107386002 -14457854 + B1_Mus2 SINE Alu 1 145 -2 1 1404 25 51 0 0 chr11 107386087 107386126 -14457730 + AT_rich Low_complexity Low_complexity 1 39 0 1 1404 263 50 50 0 chr11 107386233 107386273 -14457583 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1 1404 231 268 63 111 chr11 107386279 107386405 -14457451 - PB1D9 SINE Alu 0 120 1 1 1404 245 265 53 99 chr11 107386405 107386495 -14457361 - ID SINE ID -141 83 1 1 1404 302 193 0 162 chr11 107386683 107386782 -14457074 - B4A SINE B4 0 292 210 1 1404 429 303 90 8 chr11 107386810 107386943 -14456913 - RSINE1 SINE B4 -20 145 2 1 1404 750 229 12 24 chr11 107386952 107387122 -14456734 - B3 SINE B2 -1 215 48 1 1404 706 208 7 13 chr11 107387126 107387277 -14456579 - B1_Mur4 SINE Alu 0 150 1 1 1404 506 318 62 17 chr11 107387285 107387464 -14456392 - B4A SINE B4 -69 223 37 1 1404 1497 78 5 0 chr11 107387596 107387788 -14456068 + B2_Mm1t SINE B2 1 193 0 1 1404 21 0 0 0 chr11 107387940 107387961 -14455895 + AT_rich Low_complexity Low_complexity 1 21 0 1 1404 566 64 345 52 chr11 107388141 107388257 -14455599 + B1_Mur4 SINE Alu 1 150 0 1 1404 192 77 0 0 chr11 107388257 107388283 -14455573 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 1 1404 686 286 45 106 chr11 107388299 107388678 -14455178 - MTE2a LTR MaLR -6 373 18 1 1404 1074 33 0 48 chr11 107388700 107388889 -14454967 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1404 189 26 25 50 chr11 107389329 107389369 -14454487 + (TTTTC)n Simple_repeat Simple_repeat 1 39 0 1 1404 728 323 68 46 chr11 107389378 107389641 -14454215 + B4A SINE B4 3 271 -21 1 1404 310 197 14 70 chr11 107389772 107389843 -14454013 + B1_Mur2 SINE Alu 76 142 -7 1 1404 909 207 9 40 chr11 107389881 107390103 -14453753 + B3 SINE B2 2 216 0 1 1404 1216 48 7 0 chr11 107390103 107390248 -14453608 + B1_Mus2 SINE Alu 1 147 0 1 1404 235 85 43 0 chr11 107390253 107390300 -14453556 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1404 583 215 47 88 chr11 107390388 107390536 -14453320 - B1_Mur2 SINE Alu -6 143 2 1 1404 203 292 135 0 chr11 107390564 107390653 -14453203 - MIRc SINE MIR -70 198 98 1 1404 1174 75 0 0 chr11 107391320 107391466 -14452390 + B1_Mus2 SINE Alu 2 147 0 1 1404 404 244 53 45 chr11 107391477 107391610 -14452246 + B4 SINE B4 86 219 -73 1 1404 865 79 87 0 chr11 107391491 107391617 -14452239 + B1_Mus1 SINE Alu 12 148 0 1 1404 244 280 29 66 chr11 107391665 107391785 -14452071 - B1F2 SINE Alu -16 132 13 1 1404 714 235 11 11 chr11 107391823 107392004 -14451852 - L1_Mur2 LINE L1 -670 5207 5027 1 1404 782 149 74 0 chr11 107392006 107392127 -14451729 + Lx5 LINE L1 6443 6572 -478 1 1404 1135 76 7 0 chr11 107392171 107392316 -14451540 + B1_Mus1 SINE Alu 2 147 -1 1 1404 213 65 0 0 chr11 107392350 107392381 -14451475 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 1 1404 315 258 119 40 chr11 107392485 107392586 -14451270 - PB1D10 SINE Alu 0 117 9 1 1404 561 172 97 16 chr11 107392718 107392842 -14451014 + B1_Mur1 SINE Alu 14 147 -2 1 1404 212 59 0 29 chr11 107393900 107393935 -14449921 + (CCCCCG)n Simple_repeat Simple_repeat 2 35 0 1 1404 1232 35 0 7 chr11 107393979 107394118 -14449738 + B1_Mm SINE Alu 1 139 -8 1 1404 245 29 29 0 chr11 107394118 107394152 -14449704 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1404 939 137 20 0 chr11 107394295 107394441 -14449415 - B1_Mur3 SINE Alu 0 149 1 1 1404 413 245 73 28 chr11 107394567 107394676 -14449180 + PB1D10 SINE Alu 4 117 0 1 1404 1604 42 5 0 chr11 107394680 107394871 -14448985 + B2_Mm1t SINE B2 2 193 0 1 1404 214 127 31 16 chr11 107394875 107394889 -14448967 + A-rich Low_complexity Low_complexity 2 15 0 1 1404 1179 75 0 0 chr11 107394889 107395036 -14448820 + B1_Mm SINE Alu 1 147 0 1 1404 214 127 31 16 chr11 107395036 107395085 -14448771 + A-rich Low_complexity Low_complexity 16 65 0 1 1404 312 277 97 45 chr11 107395286 107395441 -14448415 - L1ME3B LINE L1 -283 5957 5795 1 1404 336 191 0 0 chr11 107395503 107395566 -14448290 + RSINE1 SINE B4 31 93 -72 1 1404 1262 27 7 0 chr11 107395621 107395767 -14448089 - B1_Mus2 SINE Alu 0 147 1 1 1404 225 316 57 37 chr11 107395775 107395798 -14448058 - B3 SINE B2 0 195 105 1 1404 578 228 24 16 chr11 107395798 107395923 -14447933 - RSINE1 SINE B4 -3 162 37 1 1404 225 316 57 37 chr11 107395923 107395942 -14447914 - B3 SINE B2 0 104 19 1 1404 25 51 0 0 chr11 107395968 107396007 -14447849 + AT_rich Low_complexity Low_complexity 1 39 0 1 1404 1191 62 0 0 chr11 107396009 107396155 -14447701 + B1_Mus2 SINE Alu 2 147 0 1 1404 237 65 0 0 chr11 107396156 107396187 -14447669 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1404 25 31 0 0 chr11 107396189 107396221 -14447635 + AT_rich Low_complexity Low_complexity 1 32 0 1 1404 505 226 39 0 chr11 107396236 107396338 -14447518 - RSINE1 SINE B4 -50 115 10 1 1404 315 323 54 30 chr11 107397046 107397212 -14446644 - L1ME3B LINE L1 -677 5487 5318 1 1404 438 173 0 36 chr11 107397250 107397334 -14446522 - PB1D9 SINE Alu 0 120 40 1 1404 301 179 36 60 chr11 107397358 107397441 -14446415 - L1MC4 LINE L1 -4061 2154 2074 1 1404 1008 106 7 0 chr11 107397442 107397583 -14446273 + B1_Mus1 SINE Alu 1 142 -6 1 1404 1157 75 0 7 chr11 107397627 107397775 -14446081 + B1_Mus2 SINE Alu 1 147 0 1 1404 181 0 0 65 chr11 107397784 107397815 -14446041 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1404 253 264 19 0 chr11 107397873 107397926 -14445930 - RSINE1 SINE B4 -33 132 79 1 1404 1156 287 60 35 chr11 107397971 107398342 -14445514 - Lx8 LINE L1 -762 6711 6332 1 1404 375 23 0 0 chr11 107398342 107398386 -14445470 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1404 1156 287 60 35 chr11 107398386 107398444 -14445412 - Lx8 LINE L1 -1142 6331 6271 1 1404 1206 47 0 20 chr11 107398493 107398644 -14445212 - B1_Mus1 SINE Alu 0 148 1 1 1404 211 175 0 34 chr11 107398668 107398727 -14445129 + T-rich Low_complexity Low_complexity 4 60 0 1 1404 785 162 13 39 chr11 107398729 107398883 -14444973 - B1_Mur4 SINE Alu 0 150 1 1 1404 246 176 0 0 chr11 107398967 107399018 -14444838 + CT-rich Low_complexity Low_complexity 3 53 0 1 1404 258 81 0 0 chr11 107399081 107399118 -14444738 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1404 522 86 0 0 chr11 107399123 107399204 -14444652 + (GGGAA)n Simple_repeat Simple_repeat 1 81 0 1 1404 230 231 0 58 chr11 107399227 107399296 -14444560 + GA-rich Low_complexity Low_complexity 5 69 0 1 1404 487 222 54 23 chr11 107399457 107399586 -14444270 + B1F2 SINE Alu 3 135 -14 1 1404 372 320 105 20 chr11 107399658 107399772 -14444084 + B3A SINE B2 28 156 -42 1 1404 225 0 0 0 chr11 107399772 107399797 -14444059 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1404 372 320 105 20 chr11 107399797 107399835 -14444021 + B3A SINE B2 157 193 -5 1 1404 851 265 62 29 chr11 107399948 107399973 -14443883 - B4A SINE B4 -43 249 230 1 1404 378 0 0 0 chr11 107399973 107400015 -14443841 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1404 740 67 0 286 chr11 107400015 107400204 -14443652 - B1_Mus2 SINE Alu -12 135 1 1 1404 851 265 62 29 chr11 107400204 107400418 -14443438 - B4A SINE B4 -63 229 2 1 1404 1062 109 0 0 chr11 107400555 107400693 -14443163 - B1_Mus1 SINE Alu -9 139 2 1 1404 345 211 50 58 chr11 107400740 107400861 -14442995 + BC1_Mm scRNA scRNA 1 120 -32 1 1404 213 302 32 0 chr11 107400914 107400977 -14442879 - ID4 SINE ID -6 77 13 1 1404 1029 86 29 0 chr11 107401012 107401152 -14442704 + B1_Mus2 SINE Alu 2 145 -2 1 1404 659 222 167 0 chr11 107401227 107401407 -14442449 - B3 SINE B2 -3 213 4 1 1404 954 222 141 133 chr11 107401479 107401556 -14442300 + MTD LTR MaLR 13 95 -326 1 1404 533 15 0 15 chr11 107401556 107401623 -14442233 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 1 1404 954 222 141 133 chr11 107401623 107401672 -14442184 + MTD LTR MaLR 96 105 -316 1 1404 789 169 6 51 chr11 107401672 107401828 -14442028 - B1_Mur2 SINE Alu 0 149 1 1 1404 1065 194 166 32 chr11 107401828 107402105 -14441751 + MTD LTR MaLR 105 418 -1 1 1404 1571 42 21 0 chr11 107402121 107402310 -14441546 - B2_Mm1t SINE B2 0 193 1 1 1404 535 296 128 37 chr11 107402315 107402697 -14441159 - L1MEg LINE L1 -3301 2845 2429 1 1404 226 191 222 0 chr11 107402769 107402832 -14441024 - ID_B1 SINE B4 -89 135 59 1 1404 636 14 0 0 chr11 107402900 107402973 -14440883 + (TCCC)n Simple_repeat Simple_repeat 3 75 0 1 1404 567 0 0 0 chr11 107402973 107403036 -14440820 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 1404 1053 101 0 13 chr11 107403036 107403177 -14440679 - B1_Mus1 SINE Alu -7 141 2 1 1404 354 161 11 33 chr11 107403207 107403297 -14440559 + CT-rich Low_complexity Low_complexity 2 89 0 1 1404 978 157 0 0 chr11 107403308 107403455 -14440401 - B1_Mus2 SINE Alu 0 147 1 1 1404 192 77 0 0 chr11 107403464 107403490 -14440366 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1404 482 293 14 120 chr11 107403507 107403563 -14440293 - B4A SINE B4 -14 278 88 1 1404 712 191 16 23 chr11 107403563 107403721 -14440135 - B1_Mur4 SINE Alu -3 146 3 1 1404 395 264 64 83 chr11 107404053 107404210 -14439646 - RSINE1 SINE B4 -2 163 10 1 1404 321 245 169 52 chr11 107404212 107404384 -14439472 - L1MEg LINE L1 -4131 2111 1920 1 1404 1080 58 7 0 chr11 107404399 107404537 -14439319 - B1_Mus1 SINE Alu 0 148 10 1 1404 220 179 167 71 chr11 107404587 107404671 -14439185 - B4 SINE B4 -191 101 10 1 1404 1235 118 27 0 chr11 107404785 107404972 -14438884 + B2_Mm1t SINE B2 2 193 0 1 1404 252 0 0 0 chr11 107405172 107405200 -14438656 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1404 288 0 0 0 chr11 107405200 107405231 -14438625 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1404 488 231 28 0 chr11 107405276 107405384 -14438472 + RSINE1 SINE B4 3 113 -52 1 1404 623 328 5 15 chr11 107405379 107405577 -14438279 + B4A SINE B4 11 206 -86 1 1404 375 263 48 83 chr11 107405647 107405671 -14438185 + B4A SINE B4 77 215 -76 1 1404 905 75 0 0 chr11 107405671 107405791 -14438065 + B1_Mus2 SINE Alu 16 135 -12 1 1404 243 0 0 0 chr11 107405822 107405849 -14438007 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1404 184 0 62 31 chr11 107405855 107405887 -14437969 + (CAAAC)n Simple_repeat Simple_repeat 1 33 0 1 1404 443 284 9 18 chr11 107405907 107406018 -14437838 + ID_B1 SINE B4 82 191 -33 1 1404 474 18 0 0 chr11 107406528 107406583 -14437273 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 1 1404 1141 82 0 0 chr11 107406584 107406730 -14437126 - B1_Mm SINE Alu 0 147 2 1 1404 208 182 0 35 chr11 107409154 107409211 -14434645 + G-rich Low_complexity Low_complexity 5 59 0 1 1404 243 0 0 0 chr11 107410123 107410150 -14433706 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1404 24 0 0 0 chr11 107410521 107410545 -14433311 + AT_rich Low_complexity Low_complexity 1 24 0 1 1404 246 262 0 59 chr11 107411179 107411264 -14432592 - ID4 SINE ID -3 80 1 1 1404 257 0 30 0 chr11 107411583 107411616 -14432240 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1404 1048 65 7 14 chr11 107411616 107411756 -14432100 - B1_Mus1 SINE Alu -9 139 1 1 1404 1346 82 6 6 chr11 107411764 107411947 -14431909 - B2_Mm1a SINE B2 -9 184 2 1 1404 606 208 244 0 chr11 107413069 107413237 -14430619 + B3 SINE B2 4 212 -4 1 1404 297 0 0 0 chr11 107413251 107413284 -14430572 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1 1404 1150 77 0 0 chr11 107413290 107413433 -14430423 - B1_Mus1 SINE Alu -5 143 1 1 1404 529 264 55 35 chr11 107414247 107414392 -14429464 - RSINE1 SINE B4 -7 158 11 1 1404 420 130 0 0 chr11 107414648 107414717 -14429139 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1404 678 220 122 23 chr11 107414732 107414904 -14428952 + B3A SINE B2 1 189 -9 1 1404 1260 21 0 14 chr11 107415100 107415248 -14428608 - B1_Mm SINE Alu 0 147 2 1 1404 1312 78 15 54 chr11 107415256 107415459 -14428397 - B2_Mm2 SINE B2 0 195 1 1 1404 1329 78 11 16 chr11 107415513 107415695 -14428161 - B2_Mm2 SINE B2 -14 181 1 1 1404 738 162 44 7 chr11 107415741 107415878 -14427978 - B1_Mur4 SINE Alu -8 142 1 1 1404 323 211 72 84 chr11 107415923 107416006 -14427850 - ID_B1 SINE B4 0 224 143 1 1404 586 207 9 18 chr11 107416004 107416117 -14427739 - PB1D9 SINE Alu 0 120 9 1 1404 300 327 54 9 chr11 107416105 107416144 -14427712 - B1F2 SINE Alu -28 121 81 1 1404 598 220 145 21 chr11 107416144 107416330 -14427526 - B3 SINE B2 -6 210 2 1 1404 300 327 54 9 chr11 107416330 107416401 -14427455 - B1F2 SINE Alu -69 80 7 1 1404 496 290 98 5 chr11 107416334 107416472 -14427384 - ID_B1 SINE B4 -71 153 8 1 1404 252 252 92 55 chr11 107416686 107416795 -14427061 - PB1D10 SINE Alu -3 114 2 1 1404 1233 34 0 7 chr11 107417003 107417151 -14426705 - B1_Mm SINE Alu 0 147 1 1 1404 796 91 42 0 chr11 107417221 107417364 -14426492 - RMER17B LTR ERVK -498 460 312 1 1404 1146 70 124 28 chr11 107417915 107418092 -14425764 + B2_Mm2 SINE B2 1 194 -1 1 1404 1220 117 21 5 chr11 107418154 107418343 -14425513 - B2_Mm1t SINE B2 -1 192 1 1 1404 1129 88 0 0 chr11 107418351 107418498 -14425358 - B1_Mus2 SINE Alu 0 147 1 1 1404 183 80 0 0 chr11 107418715 107418740 -14425116 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1404 1199 119 0 17 chr11 107418815 107418995 -14424861 - B2_Mm2 SINE B2 -18 177 1 1 1404 519 295 16 0 chr11 107418995 107419117 -14424739 + ID_B1 SINE B4 94 217 -7 1 1404 223 325 36 36 chr11 107419168 107419251 -14424605 - ID4 SINE ID 0 83 1 1 1404 330 235 90 57 chr11 107419432 107419554 -14424302 - PB1 SINE Alu -1 126 1 1 1404 607 201 79 0 chr11 107419831 107419970 -14423886 + B1_Mur4 SINE Alu 1 150 0 1 1404 180 179 60 0 chr11 107420125 107420276 -14423580 + (AGTAG)n Simple_repeat Simple_repeat 4 163 0 1 1404 477 0 0 0 chr11 107420582 107420635 -14423221 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1404 645 220 8 0 chr11 107420635 107420767 -14423089 - B3A SINE B2 -65 133 1 1 1404 24 67 0 0 chr11 107420863 107420908 -14422948 + AT_rich Low_complexity Low_complexity 1 45 0 1 1404 1243 48 0 0 chr11 107420969 107421115 -14422741 + B1_Mus2 SINE Alu 1 146 -1 1 1404 1252 20 7 0 chr11 107422500 107422646 -14421210 - B1_Mus2 SINE Alu 0 147 1 1 1404 425 125 11 0 chr11 107422843 107422931 -14420925 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1404 1040 202 50 0 chr11 107422941 107423139 -14420717 - B3 SINE B2 -7 209 2 1 1404 387 0 0 0 chr11 107423559 107423602 -14420254 + (TTCCC)n Simple_repeat Simple_repeat 4 46 0 1 1404 255 229 0 0 chr11 107423603 107423664 -14420192 + CT-rich Low_complexity Low_complexity 1 61 0 1 1404 678 239 14 0 chr11 107423664 107423802 -14420054 - B1F2 SINE Alu -5 144 5 1 1404 899 219 47 24 chr11 107423838 107424049 -14419807 - B3 SINE B2 0 216 1 1 1404 689 184 35 14 chr11 107424060 107424203 -14419653 - B1_Mur1 SINE Alu 0 149 4 1 1404 546 210 72 8 chr11 107424501 107424626 -14419230 + B1F1 SINE Alu 9 141 -8 1 1404 487 215 84 56 chr11 107425083 107425226 -14418630 + B1F SINE Alu 3 149 0 1 1404 925 119 105 18 chr11 107425249 107425420 -14418436 - B2_Mm2 SINE B2 -8 187 2 1 1404 1577 21 5 59 chr11 107425595 107425798 -14418058 - B2_Mm1a SINE B2 0 193 2 1 1404 343 132 0 29 chr11 107425962 107426032 -14417824 + CT-rich Low_complexity Low_complexity 1 68 0 1 1404 1382 96 37 0 chr11 107426329 107426517 -14417339 - B2_Mm2 SINE B2 0 195 1 1 1404 630 252 50 25 chr11 107427413 107427572 -14416284 - RSINE1 SINE B4 0 165 3 1 1404 783 231 91 11 chr11 107427583 107427758 -14416098 - ID_B1 SINE B4 -35 189 1 1 1404 366 250 0 0 chr11 107427883 107427951 -14415905 + ID4_ SINE ID 8 75 -8 1 1404 257 0 0 29 chr11 107428303 107428337 -14415519 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1404 417 264 52 9 chr11 107428341 107428461 -14415395 - B4A SINE B4 -16 276 148 1 1404 363 297 14 0 chr11 107428570 107428644 -14415212 - B1F1 SINE Alu -72 77 3 1 1404 276 310 0 27 chr11 107428583 107428656 -14415200 - B4A SINE B4 -144 148 78 1 1404 391 139 260 29 chr11 107428672 107428776 -14415080 + B1_Mur3 SINE Alu 2 129 -20 1 1404 986 106 35 7 chr11 107429110 107429252 -14414604 - B1_Mur3 SINE Alu 0 149 4 1 1404 374 218 121 36 chr11 107429422 107429549 -14414307 - PB1D9 SINE Alu 0 149 29 1 1404 846 144 249 0 chr11 107429581 107429754 -14414102 - B3 SINE B2 0 216 1 1 1404 287 193 380 15 chr11 107429758 107429895 -14413961 - B3 SINE B2 -5 190 4 1 1404 379 250 61 68 chr11 107429988 107430151 -14413705 - MIR SINE MIR -80 182 21 1 1404 24 32 0 0 chr11 107430432 107430463 -14413393 + AT_rich Low_complexity Low_complexity 1 31 0 1 1404 459 258 154 82 chr11 107430528 107430710 -14413146 + B3A SINE B2 1 195 -3 1 1404 287 296 34 34 chr11 107430791 107430910 -14412946 - B1_Mur3 SINE Alu 0 149 31 1 1404 497 287 41 14 chr11 107430971 107431116 -14412740 + MER20 DNA MER1_type 39 187 -32 1 1404 764 240 37 28 chr11 107431191 107431405 -14412451 - B3 SINE B2 0 216 1 1 1404 21 89 0 0 chr11 107431677 107431733 -14412123 + AT_rich Low_complexity Low_complexity 1 56 0 1 1404 613 145 180 9 chr11 107431737 107431848 -14412008 + B1_Mus1 SINE Alu 19 148 0 1 1404 3515 40 36 0 chr11 107431925 107432346 -14411510 - RLTR10C LTR ERVK 0 436 1 1 1404 619 307 35 52 chr11 107432361 107432591 -14411265 + B4A SINE B4 1 226 -66 1 1404 429 278 62 16 chr11 107432615 107432743 -14411113 - B1_Mur2 SINE Alu -9 140 7 1 1404 264 319 35 56 chr11 107432743 107432758 -14411098 - ID_B1 SINE B4 -9 215 76 1 1404 220 256 0 0 chr11 107432748 107432791 -14411065 + PB1D9 SINE Alu 13 55 -65 1 1404 387 181 255 0 chr11 107432811 107432905 -14410951 + B3 SINE B2 36 153 -63 1 1404 252 0 0 0 chr11 107432929 107432957 -14410899 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1 1404 306 209 0 173 chr11 107432960 107433041 -14410815 + PB1D9 SINE Alu 49 115 -5 1 1404 333 238 37 24 chr11 107433006 107433088 -14410768 + B4A SINE B4 190 272 -20 1 1404 369 0 0 0 chr11 107433108 107433149 -14410707 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1404 1354 124 36 18 chr11 107433464 107433685 -14410171 - URR1B DNA MER1_type 0 225 1 1 1404 1449 183 147 86 chr11 107434168 107434575 -14409281 - MT2A LTR ERVL -72 461 30 1 1404 270 229 159 35 chr11 107434593 107434738 -14409118 - RSINE1 SINE B4 0 165 3 1 1404 224 284 75 0 chr11 107434841 107434908 -14408948 - ID4 SINE ID -3 80 9 1 1404 506 248 88 0 chr11 107435096 107435233 -14408623 - RSINE1 SINE B4 -1 164 16 1 1404 225 94 0 0 chr11 107435558 107435590 -14408266 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1404 670 242 65 55 chr11 107436007 107436208 -14407648 - B3 SINE B2 -12 204 2 1 1404 329 346 151 19 chr11 107436641 107437071 -14406785 - L2a LINE L2 0 3426 2940 1 1404 559 114 314 0 chr11 107437195 107437300 -14406556 + B1_Mur4 SINE Alu 1 138 -12 1 1404 547 211 0 0 chr11 107437356 107437451 -14406405 + B1_Mm SINE Alu 47 141 -6 1 1404 384 208 52 74 chr11 107438132 107438267 -14405589 - B1F2 SINE Alu 0 149 18 1 1404 873 176 9 27 chr11 107438363 107438555 -14405301 - B3 SINE B2 -4 191 9 1 1404 826 142 24 0 chr11 107438590 107438717 -14405139 - B1_Mus2 SINE Alu -17 130 1 1 1404 183 42 0 0 chr11 107439921 107439945 -14403911 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1404 1209 90 0 24 chr11 107440279 107440449 -14403407 - B2_Mm2 SINE B2 -28 167 2 1 1404 1040 182 28 38 chr11 107440508 107440719 -14403137 + B3 SINE B2 1 209 -7 1 1404 1510 43 38 0 chr11 107441166 107441352 -14402504 - B2_Mm1a SINE B2 0 193 1 1 1404 345 176 0 98 chr11 107441500 107441582 -14402274 - B1_Mur2 SINE Alu 0 149 76 1 1404 838 153 34 20 chr11 107441634 107441781 -14402075 + B1_Mur2 SINE Alu 1 149 0 1 1404 685 164 80 22 chr11 107442111 107442248 -14401608 - B1_Mus1 SINE Alu 0 148 4 1 1404 800 301 23 72 chr11 107442264 107442568 -14401288 - B4A SINE B4 -2 290 2 1 1404 1657 16 16 0 chr11 107443081 107443271 -14400585 - B2_Mm1t SINE B2 0 193 1 1 1404 653 90 0 9 chr11 107443324 107443436 -14400420 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 1 1404 325 164 0 2 chr11 107443438 107443495 -14400361 - B1_Mur1 SINE Alu -28 119 64 1 1404 1523 53 27 0 chr11 107443549 107443737 -14400119 - B2_Mm1t SINE B2 0 193 1 1 1404 31 0 0 0 chr11 107444113 107444144 -14399712 + AT_rich Low_complexity Low_complexity 1 31 0 1 1404 356 302 0 30 chr11 107444146 107444245 -14399611 - RSINE1 SINE B4 -69 96 1 1 1404 218 338 0 0 chr11 107444760 107444837 -14399019 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1404 762 105 0 0 chr11 107444849 107444963 -14398893 + (TG)n Simple_repeat Simple_repeat 2 115 0 1 1404 379 344 38 44 chr11 107444966 107445124 -14398732 - RSINE1 SINE B4 -8 157 1 1 1404 526 300 7 26 chr11 107445517 107445671 -14398185 + Tigger5 DNA MER2_type 97 247 -2159 1 1404 494 302 6 16 chr11 107445829 107446011 -14397845 - B3A SINE B2 -16 182 3 1 1404 317 265 12 0 chr11 107446274 107446357 -14397499 + Tigger5 DNA MER2_type 2323 2406 0 1 1404 357 299 35 114 chr11 107446742 107446768 -14397088 - B3 SINE B2 0 216 196 1 1404 1502 182 163 3 chr11 107446768 107447099 -14396757 - ORR1C2 LTR MaLR 0 384 1 1 1404 460 272 40 102 chr11 107447099 107447299 -14396557 - B3A SINE B2 -21 195 8 1 1404 420 274 42 6 chr11 107447294 107447459 -14396397 - B4A SINE B4 -89 203 33 1 1404 234 195 0 198 chr11 107447410 107447466 -14396390 - B3 SINE B2 -136 80 42 1 1404 261 0 0 0 chr11 107447466 107447495 -14396361 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1404 961 41 131 0 chr11 107447495 107447617 -14396239 - B1_Mus2 SINE Alu -9 138 1 1 1404 234 195 0 198 chr11 107447617 107447655 -14396201 - B3 SINE B2 -175 41 5 1 1404 248 252 190 15 chr11 107447888 107448025 -14395831 - L1MD2 LINE L1 -245 6114 5954 1 1404 496 278 69 7 chr11 107448281 107448426 -14395430 - RSINE1 SINE B4 -8 157 4 1 1404 291 234 0 61 chr11 107448632 107448714 -14395142 - ID_B1 SINE B4 -2 222 146 1 1404 1048 153 22 69 chr11 107449067 107449299 -14394557 - RMER19B LTR ERVK 0 902 682 1 1404 482 158 134 44 chr11 107449305 107449458 -14394398 - RMER19B LTR ERVK -596 141 2 1 1404 751 125 172 0 chr11 107449789 107449917 -14393939 - B1_Mur4 SINE Alu 0 150 1 1 1404 716 240 18 0 chr11 107449964 107450135 -14393721 - B3 SINE B2 -35 181 8 1 1404 275 0 29 0 chr11 107450154 107450189 -14393667 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 1404 504 232 45 0 chr11 107450192 107450304 -14393552 - B1_Mur1 SINE Alu -14 135 19 1 1404 245 172 0 33 chr11 107450351 107450394 -14393462 + T-rich Low_complexity Low_complexity 17 58 0 1 1404 1276 106 5 16 chr11 107450394 107450585 -14393271 - B2_Mm1t SINE B2 -4 189 1 1 1404 245 172 0 33 chr11 107450585 107450601 -14393255 + T-rich Low_complexity Low_complexity 1 16 0 1 1404 787 245 29 14 chr11 107450609 107450816 -14393040 - B3 SINE B2 -6 210 1 1 1404 470 148 0 24 chr11 107450927 107451010 -14392846 - B1F1 SINE Alu -1 148 68 1 1404 486 316 22 0 chr11 107451028 107451167 -14392689 - RSINE1 SINE B4 -21 144 3 1 1404 1271 65 5 80 chr11 107451225 107451426 -14392430 - B2_Mm2 SINE B2 -8 187 2 1 1404 427 294 43 29 chr11 107451436 107451576 -14392280 - B1F SINE Alu -7 142 1 1 1404 2707 71 58 0 chr11 107452767 107453447 -14390409 - L1VL4 LINE L1 -2304 1255 544 1 1404 977 138 0 0 chr11 107454262 107454407 -14389449 - B1_Mur4 SINE Alu 0 150 6 1 1404 1280 124 11 0 chr11 107454484 107454669 -14389187 + B2_Mm1t SINE B2 1 187 -6 1 1404 552 267 0 0 chr11 107454710 107454830 -14389026 - PB1D7 SINE Alu 0 120 1 1 1404 476 222 74 0 chr11 107454837 107454945 -14388911 - PB1D10 SINE Alu 0 117 2 1 1404 243 0 0 0 chr11 107455111 107455138 -14388718 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1404 652 148 26 9 chr11 107456112 107456228 -14387628 - B1_Mur1 SINE Alu -6 143 26 1 1404 180 97 0 0 chr11 107456370 107456401 -14387455 + (AGCTG)n Simple_repeat Simple_repeat 1 31 0 1 1404 658 295 75 25 chr11 107456778 107457056 -14386800 - B4A SINE B4 0 292 1 1 1404 1638 31 11 0 chr11 107457192 107457383 -14386473 - B2_Mm1a SINE B2 0 193 1 1 1404 23 0 0 0 chr11 107457801 107457824 -14386032 + AT_rich Low_complexity Low_complexity 1 23 0 1 1404 431 256 125 62 chr11 107457913 107458105 -14385751 - Lx9 LINE L1 -206 7438 7235 1 1404 1177 62 0 0 chr11 107458293 107458438 -14385418 - B1_Mus1 SINE Alu -2 146 2 1 1404 490 274 71 13 chr11 107459037 107459192 -14384664 + RSINE1 SINE B4 2 165 0 1 1404 1220 41 0 0 chr11 107459735 107459881 -14383975 - B1_Mm SINE Alu 0 147 2 1 1404 533 75 174 28 chr11 107459881 107459980 -14383876 - L1Md_F2 LINE L1 -9 6573 6458 1 1404 33 43 0 0 chr11 107460212 107460259 -14383597 + AT_rich Low_complexity Low_complexity 1 47 0 1 1404 412 136 0 0 chr11 107460300 107460366 -14383490 - B3 SINE B2 -149 67 2 1 1404 24 53 0 0 chr11 107462121 107462159 -14381697 + AT_rich Low_complexity Low_complexity 1 38 0 1 1404 687 280 26 0 chr11 107462494 107462683 -14381173 - B3 SINE B2 -6 210 17 1 1404 237 211 0 0 chr11 107464792 107464844 -14379012 - ID4 SINE ID -30 53 2 1 1404 227 222 0 0 chr11 107465183 107465228 -14378628 + T-rich Low_complexity Low_complexity 1 45 0 1 1404 306 106 0 0 chr11 107466577 107466624 -14377232 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1404 666 202 0 0 chr11 107466625 107466739 -14377117 - PB1D10 SINE Alu -2 115 2 1 1404 218 163 23 0 chr11 107467422 107467465 -14376391 + RSINE1 SINE B4 4 47 -118 1 1404 474 230 96 7 chr11 107467478 107467614 -14376242 - RSINE1 SINE B4 -15 150 3 1 1404 189 107 0 0 chr11 107467645 107467673 -14376183 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1 1404 392 267 98 52 chr11 107467690 107467864 -14375992 - B3A SINE B2 -16 182 1 1 1404 233 163 20 0 chr11 107467864 107467913 -14375943 + CT-rich Low_complexity Low_complexity 3 52 0 1 1404 524 235 8 32 chr11 107467915 107468038 -14375818 - PB1D9 SINE Alu 0 120 1 1 1404 749 214 181 0 chr11 107468225 107468407 -14375449 - B3 SINE B2 -1 215 1 1 1404 737 173 59 12 chr11 107468692 107468862 -14374994 - MTC-int LTR MaLR -1080 178 1 1 1404 1875 195 35 23 chr11 107468874 107469273 -14374583 - MTC LTR MaLR -17 404 1 1 1404 688 165 35 0 chr11 107470356 107470471 -14373385 - PB1D9 SINE Alu 0 120 2 1 1404 234 0 0 0 chr11 107470551 107470577 -14373279 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1 1404 1126 56 0 48 chr11 107470577 107470745 -14373111 - B2_Mm1t SINE B2 -33 160 1 1 1404 673 211 68 6 chr11 107471364 107471526 -14372330 - B3A SINE B2 -25 173 2 1 1404 207 0 0 0 chr11 107471638 107471661 -14372195 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1404 1110 82 0 0 chr11 107471662 107471820 -14372036 - B2_Mm2 SINE B2 -37 158 1 1 1404 378 0 0 0 chr11 107472306 107472348 -14371508 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 1 1404 331 270 16 83 chr11 107472363 107472484 -14371372 + PB1D7 SINE Alu 1 113 -7 1 1404 278 283 30 10 chr11 107472864 107472964 -14370892 + PB1D7 SINE Alu 2 103 -17 1 1404 1115 68 7 33 chr11 107473327 107473478 -14370378 + B1_Mus1 SINE Alu 1 147 -1 1 1404 195 170 0 0 chr11 107473479 107473526 -14370330 + A-rich Low_complexity Low_complexity 1 47 0 1 1404 565 243 58 7 chr11 107473601 107473738 -14370118 - B1_Mur2 SINE Alu 0 149 6 1 1404 394 206 0 58 chr11 107473646 107473749 -14370107 - MT2B LTR ERVL -344 257 161 1 1404 255 228 274 81 chr11 107473860 107473984 -14369872 - B3A SINE B2 -50 148 1 1 1404 228 246 215 0 chr11 107474200 107474265 -14369591 + ID4_ SINE ID 2 80 -3 1 1404 229 267 18 37 chr11 107475448 107475557 -14368299 + CT-rich Low_complexity Low_complexity 1 107 0 1 1404 452 256 98 16 chr11 107475662 107475785 -14368071 - B1F2 SINE Alu -8 141 9 1 1404 225 116 23 23 chr11 107475844 107475888 -14367968 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1404 210 271 106 53 chr11 107476794 107476907 -14366949 - PB1 SINE Alu -6 121 3 1 1404 304 263 114 10 chr11 107476907 107476979 -14366877 - B4 SINE B4 -203 89 7 1 1404 377 270 0 67 chr11 107477146 107477265 -14366591 + PB1D9 SINE Alu 2 112 -8 1 1404 1619 32 16 0 chr11 107477327 107477516 -14366340 - B2_Mm1t SINE B2 0 193 2 1 1404 289 289 52 4 chr11 107477516 107477628 -14366228 + PB1D10 SINE Alu 12 136 -13 1 1404 456 202 44 58 chr11 107477857 107477994 -14365862 + B3A SINE B2 60 194 -4 1 1404 292 283 11 21 chr11 107478554 107478648 -14365208 - B3A SINE B2 -6 192 100 1 1404 189 0 0 0 chr11 107478823 107478844 -14365012 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1404 673 62 10 10 chr11 107478844 107478942 -14364914 - B1_Mus2 SINE Alu 0 147 50 1 1405 563 196 10 0 chr11 107479351 107479453 -14364403 - B1_Mur3 SINE Alu -36 113 11 1 1405 417 302 87 0 chr11 107479923 107480072 -14363784 - RSINE1 SINE B4 -2 163 2 1 1405 206 363 9 17 chr11 107481131 107481246 -14362610 + MIRb SINE MIR 132 245 -23 1 1405 545 231 25 8 chr11 107481638 107481756 -14362100 - B1F1 SINE Alu -9 140 21 1 1405 8770 19 18 0 chr11 107482480 107483724 -14360132 - L1Md_A LINE L1 0 6582 5317 1 1405 974 86 58 0 chr11 107483826 107483965 -14359891 - B1_Mus2 SINE Alu 0 147 1 1 1405 506 152 32 89 chr11 107485266 107485389 -14358467 + PB1D9 SINE Alu 5 120 0 1 1405 267 152 22 0 chr11 107486164 107486210 -14357646 + (CTAGGG)n Simple_repeat Simple_repeat 2 48 0 1 1405 232 156 44 0 chr11 107486398 107486443 -14357413 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1 1405 492 32 0 0 chr11 107486471 107486533 -14357323 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1405 734 173 75 0 chr11 107488195 107488328 -14355528 + B1_Mus2 SINE Alu 1 143 -4 1 1405 2593 27 0 0 chr11 107489485 107489783 -14354073 - L1Md_F2 LINE L1 -12 6570 6273 1 1405 299 169 14 0 chr11 107490208 107490279 -14353577 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1405 218 220 152 0 chr11 107491918 107491977 -14351879 - ID SINE ID -146 78 11 1 1405 259 245 66 38 chr11 107492128 107492234 -14351622 + ID_B1 SINE B4 113 221 -3 1 1405 396 0 0 0 chr11 107493917 107493961 -14349895 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1405 1620 37 21 0 chr11 107493997 107494186 -14349670 - B2_Mm1t SINE B2 0 193 1 1 1405 239 355 8 0 chr11 107494260 107494384 -14349472 + (TG)n Simple_repeat Simple_repeat 2 126 0 1 1405 354 282 41 21 chr11 107494417 107494562 -14349294 - B4A SINE B4 -8 284 137 1 1405 401 214 129 58 chr11 107494703 107494842 -14349014 - B1F SINE Alu 0 149 1 1 1405 213 39 0 0 chr11 107495618 107495644 -14348212 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1 1405 728 153 18 3 chr11 107495692 107495828 -14348028 - B1_Mus1 SINE Alu 0 149 14 1 1405 546 283 66 16 chr11 107495958 107496141 -14347715 - B3A SINE B2 -6 192 1 1 1405 447 92 0 0 chr11 107496633 107496698 -14347158 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1405 337 258 140 0 chr11 107496698 107496791 -14347065 - PB1D10 SINE Alu -11 106 1 1 1405 24 0 0 0 chr11 107496792 107496816 -14347040 + AT_rich Low_complexity Low_complexity 1 24 0 1 1405 662 258 0 19 chr11 107496844 107497006 -14346850 - RSINE1 SINE B4 -5 160 2 1 1405 369 0 0 0 chr11 107499351 107499392 -14344464 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 1405 322 294 149 14 chr11 107500201 107500349 -14343507 + Charlie16a DNA MER1_type 64 231 -111 1 1405 780 197 35 7 chr11 107500589 107500732 -14343124 - B1_Mur2 SINE Alu -1 148 2 2 1405 4197 210 141 23 chr11 107500821 107501388 -14342468 - Lx9 LINE L1 -1 7643 7021 3 1405 342 18 55 0 chr11 107501388 107501443 -14342413 + (TTTTG)n Simple_repeat Simple_repeat 5 62 0 4 1405 4197 210 141 23 chr11 107501443 107502072 -14341784 - Lx9 LINE L1 -624 7020 6307 3 1405 298 269 130 7 chr11 107502080 107502226 -14341630 - L1M4c LINE L1 -4211 3123 2960 5 1405 393 250 123 37 chr11 107502644 107503028 -14340828 - L1M4c LINE L1 -4608 2494 2040 5 1405 254 254 109 87 chr11 107503039 107503177 -14340679 + YREP_Mm Unknown Unknown 154 294 -1518 6 1405 889 89 8 0 chr11 107503062 107503185 -14340671 - B1_Mur4 SINE Alu -11 139 16 7 1405 495 250 0 35 chr11 107503185 107503203 -14340653 - ID_B1 SINE B4 -11 213 78 8 1405 307 293 100 74 chr11 107503335 107503716 -14340140 - L1MA7 LINE L1 -354 5937 5571 9 1405 201 147 0 0 chr11 107504032 107504066 -14339790 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1 1405 832 160 0 44 chr11 107504073 107504210 -14339646 - B1_Mus2 SINE Alu -8 139 9 1 1405 484 320 28 23 chr11 107504222 107504398 -14339458 - B3A SINE B2 -21 177 1 1 1405 261 0 0 0 chr11 107504533 107504562 -14339294 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1405 1173 61 7 0 chr11 107504564 107504711 -14339145 - B1_Mus1 SINE Alu 0 148 1 1 1405 3433 185 45 61 chr11 107504713 107505499 -14338357 - RMER1C Other Other 0 1342 84 1 1405 399 279 40 16 chr11 107505696 107505820 -14338036 - RMER1B Other Other -320 746 620 1 1405 267 154 51 0 chr11 107506518 107506596 -14337260 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1 1405 2618 68 23 6 chr11 107507765 107508118 -14335738 + L1_Mus3 LINE L1 6279 6637 -1 1 1405 3091 154 131 0 chr11 107508395 107508958 -14334898 - RMER1A Other Other -14 1016 380 1 1405 364 256 44 104 chr11 107509484 107509619 -14334237 + PB1D7 SINE Alu 1 127 0 2 1405 648 247 74 37 chr11 107509635 107509904 -14333952 - L1MB3 LINE L1 0 6183 5905 2 1405 289 282 0 13 chr11 107509994 107510073 -14333783 - L1MB3 LINE L1 -267 5907 5830 2 1405 282 275 61 4 chr11 107510123 107510288 -14333568 - L1MB3 LINE L1 -439 5732 5557 2 1405 309 319 52 55 chr11 107510915 107511187 -14332669 - L2a LINE L2 -28 3398 3128 2 1405 806 128 16 8 chr11 107511477 107511603 -14332253 - B1_Mur2 SINE Alu -2 147 21 2 1405 407 165 0 115 chr11 107511519 107511615 -14332241 - MT2B LTR ERVL -344 257 173 2 1405 28 0 0 0 chr11 107511640 107511668 -14332188 + AT_rich Low_complexity Low_complexity 1 28 0 2 1405 200 245 20 0 chr11 107511668 107511717 -14332139 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 2 1405 221 250 0 0 chr11 107511751 107511803 -14332053 - B3A SINE B2 -146 52 1 2 1405 378 0 0 0 chr11 107512236 107512278 -14331578 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1405 381 22 0 0 chr11 107512278 107512323 -14331533 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1405 254 270 85 115 chr11 107514073 107514203 -14329653 + B4 SINE B4 167 292 0 3 1405 227 250 0 20 chr11 107514720 107514769 -14329087 + RSINE1 SINE B4 2 49 -116 3 1405 348 200 0 0 chr11 107515369 107515444 -14328412 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1405 395 264 83 23 chr11 107515480 107515612 -14328244 - B3A SINE B2 -7 191 52 3 1405 332 204 78 39 chr11 107515584 107515686 -14328170 - B4A SINE B4 -10 282 177 3 1405 452 241 56 0 chr11 107515699 107515807 -14328049 - B4A SINE B4 -176 116 3 3 1405 4216 173 80 62 chr11 107516368 107517241 -14326615 + RMER19B LTR ERVK 1 889 -13 3 1405 315 182 21 172 chr11 107517859 107517952 -14325904 - RSINE1 SINE B4 0 165 87 3 1405 235 343 41 41 chr11 107519475 107519621 -14324235 + RSINE1 SINE B4 16 161 -4 3 1405 278 200 31 16 chr11 107519657 107519784 -14324072 + (CAGA)n Simple_repeat Simple_repeat 4 132 0 3 1405 313 186 244 71 chr11 107519784 107519911 -14323945 - B1_Mur2 SINE Alu 0 149 1 3 1405 802 260 6 11 chr11 107519952 107520131 -14323725 - B3A SINE B2 -19 179 2 4 1405 1475 69 16 0 chr11 107520359 107520547 -14323309 + B2_Mm2 SINE B2 2 192 -3 4 1405 539 286 56 17 chr11 107520935 107521113 -14322743 - MLT1E2 LTR MaLR -104 523 339 4 1405 378 300 8 0 chr11 107521221 107521341 -14322515 - L1M5 LINE L1 -439 5685 5565 4 1405 398 218 143 18 chr11 107521586 107521698 -14322158 + B1F2 SINE Alu 24 149 0 4 1405 605 206 28 2 chr11 107521791 107521901 -14321955 + ID_B1 SINE B4 109 223 -69 4 1405 248 312 31 88 chr11 107521901 107522094 -14321762 + B3A SINE B2 1 182 -16 4 1405 233 301 44 89 chr11 107522094 107522118 -14321738 + B4A SINE B4 224 240 -52 4 1405 378 0 0 0 chr11 107522118 107522160 -14321696 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1405 459 0 0 0 chr11 107525185 107525236 -14318620 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1405 1120 36 14 14 chr11 107525396 107525535 -14318321 - B1_Mm SINE Alu -8 139 1 4 1405 232 239 171 68 chr11 107525636 107525714 -14318142 - L1M5 LINE L1 -1426 4720 4630 5 1405 343 20 59 0 chr11 107525714 107525765 -14318091 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 1405 232 239 171 68 chr11 107525765 107525803 -14318053 - L1M5 LINE L1 -1517 4629 4592 5 1405 460 242 10 29 chr11 107526140 107526242 -14317614 + PB1D10 SINE Alu 3 102 -15 5 1405 296 301 0 24 chr11 107526658 107526743 -14317113 - MTEb LTR MaLR -19 360 278 5 1405 839 200 44 33 chr11 107527578 107527754 -14316102 - B3 SINE B2 -6 210 54 5 1405 330 178 39 52 chr11 107528382 107528459 -14315397 + ID4_ SINE ID 5 80 -3 5 1405 450 0 0 0 chr11 107528462 107528512 -14315344 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 5 1405 261 0 0 0 chr11 107531309 107531338 -14312518 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1405 229 196 36 0 chr11 107533095 107533151 -14310705 + T-rich Low_complexity Low_complexity 2 59 0 5 1405 1063 183 37 33 chr11 107533155 107533370 -14310486 - B3 SINE B2 0 216 1 5 1405 249 83 0 0 chr11 107533384 107533420 -14310436 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1405 317 318 99 9 chr11 107533421 107533532 -14310324 - RSINE1 SINE B4 -42 123 3 6 1405 219 234 0 0 chr11 107533581 107533645 -14310211 + A-rich Low_complexity Low_complexity 1 64 0 6 1405 719 208 173 0 chr11 107534955 107535128 -14308728 + B3 SINE B2 1 203 -13 6 1405 287 319 66 0 chr11 107535286 107535377 -14308479 - B1F SINE Alu -51 98 2 6 1405 318 248 139 0 chr11 107535402 107535503 -14308353 - PB1D9 SINE Alu -5 115 1 6 1405 288 264 150 57 chr11 107535590 107535757 -14308099 - L1M4 LINE L1 -6286 256 70 6 1405 1470 83 16 0 chr11 107535757 107535949 -14307907 - B2_Mm2 SINE B2 0 195 1 6 1405 288 264 150 57 chr11 107535949 107535974 -14307882 - L1M4 LINE L1 -6473 69 46 6 1405 768 215 68 5 chr11 107536828 107537020 -14306836 + B3 SINE B2 3 206 -10 6 1405 225 167 0 0 chr11 107537978 107538020 -14305836 + G-rich Low_complexity Low_complexity 1 42 0 6 1405 749 226 45 70 chr11 107538942 107539142 -14304714 - B3 SINE B2 -2 214 20 7 1405 248 268 41 27 chr11 107539181 107539254 -14304602 - ID4 SINE ID -2 81 8 7 1405 337 265 9 29 chr11 107539301 107539406 -14304450 - PB1D10 SINE Alu -13 104 2 7 1405 238 163 102 0 chr11 107539531 107539580 -14304276 - RSINE1 SINE B4 -110 55 2 7 1405 1220 68 0 0 chr11 107540886 107541033 -14302823 + B1_Mm SINE Alu 1 147 0 7 1405 3563 70 9 7 chr11 107541306 107541769 -14302087 + Lx LINE L1 6191 6654 0 7 1405 891 222 54 10 chr11 107541845 107542050 -14301806 - B3 SINE B2 0 216 3 7 1405 328 309 102 46 chr11 107542255 107542452 -14301404 - L1MC5 LINE L1 -734 7227 7020 7 1405 313 243 184 19 chr11 107542759 107542965 -14300891 + L1M4 LINE L1 3016 3255 -2891 7 1405 1020 270 95 29 chr11 107543702 107544278 -14299578 + L1MD LINE L1 3288 3909 -2237 7 1405 228 292 32 6 chr11 107544515 107544606 -14299250 + GA-rich Low_complexity Low_complexity 1 93 0 8 1405 215 259 34 17 chr11 107545761 107545820 -14298036 + L2 LINE L2 1345 1404 -2015 8 1405 324 0 0 0 chr11 107547033 107547069 -14296787 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1405 424 235 20 0 chr11 107547235 107547333 -14296523 + PB1D10 SINE Alu 1 100 -17 8 1405 21 0 0 0 chr11 107548235 107548256 -14295600 + AT_rich Low_complexity Low_complexity 1 21 0 8 1405 21 0 0 0 chr11 107548472 107548493 -14295363 + AT_rich Low_complexity Low_complexity 1 21 0 8 1405 198 103 0 0 chr11 107548673 107548702 -14295154 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1405 24 53 0 0 chr11 107550156 107550194 -14293662 + AT_rich Low_complexity Low_complexity 1 38 0 8 1405 189 107 0 0 chr11 107552420 107552448 -14291408 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1405 209 253 93 0 chr11 107553024 107553099 -14290757 - MER5A DNA MER1_type -1 188 107 8 1405 24 0 0 0 chr11 107554576 107554600 -14289256 + AT_rich Low_complexity Low_complexity 1 24 0 9 1405 962 211 16 5 chr11 107555836 107556027 -14287829 - B3 SINE B2 -8 208 16 9 1405 243 289 26 0 chr11 107555963 107556039 -14287817 - B4A SINE B4 -211 81 4 9 1405 384 156 22 11 chr11 107556533 107556624 -14287232 + CT-rich Low_complexity Low_complexity 3 94 0 9 1405 361 240 65 28 chr11 107556638 107556745 -14287111 - PB1D9 SINE Alu -6 114 4 9 1405 231 200 0 0 chr11 107556815 107556865 -14286991 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1405 378 248 139 132 chr11 107556865 107557153 -14286703 - B4A SINE B4 0 292 3 9 1405 290 210 0 0 chr11 107557162 107557224 -14286632 - ID4 SINE ID 0 83 22 9 1405 3108 56 2 8 chr11 107558100 107558498 -14285358 + MTA_Mm LTR MaLR 1 396 0 9 1405 537 16 0 0 chr11 107558686 107558748 -14285108 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1405 458 206 0 40 chr11 107558760 107558861 -14284995 - PB1D10 SINE Alu -19 98 2 1 1405 287 348 28 28 chr11 107559136 107559281 -14284575 + ORR1E LTR MaLR 19 163 -196 1 1405 264 245 113 38 chr11 107559334 107559440 -14284416 + ORR1E LTR MaLR 257 370 -4 1 1405 189 0 0 0 chr11 107559523 107559544 -14284312 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1405 252 244 0 0 chr11 107560386 107560476 -14283380 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1405 2466 232 70 6 chr11 107560692 107561337 -14282519 - Lx9 LINE L1 0 7644 6959 1 1405 198 128 0 0 chr11 107561664 107561703 -14282153 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1405 510 255 110 7 chr11 107561730 107561884 -14281972 - B4A SINE B4 -21 271 102 1 1405 266 188 41 15 chr11 107562805 107562893 -14280963 + B3A SINE B2 7 104 -112 1 1405 852 268 37 42 chr11 107562967 107563292 -14280564 + ORR1D2 LTR MaLR 1 309 -61 1 1405 573 304 39 26 chr11 107563353 107563583 -14280273 - MER58B DNA MER1_type -105 236 4 1 1405 881 120 0 7 chr11 107563748 107563891 -14279965 + (TTC)n Simple_repeat Simple_repeat 1 142 0 1 1405 358 211 0 18 chr11 107563893 107564004 -14279852 + CT-rich Low_complexity Low_complexity 2 110 0 1 1405 1043 111 179 26 chr11 107564229 107564424 -14279432 - URR1A DNA MER1_type 0 226 2 1 1405 447 52 0 0 chr11 107566197 107566255 -14277601 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1405 206 139 28 0 chr11 107566322 107566358 -14277498 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1405 738 284 91 4 chr11 107567695 107567960 -14275896 + B4A SINE B4 1 288 -4 1 1405 270 0 0 0 chr11 107567996 107568026 -14275830 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1405 634 24 24 0 chr11 107568319 107568403 -14275453 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1405 865 123 0 0 chr11 107568404 107568534 -14275322 - B1_Mus2 SINE Alu -6 141 12 1 1405 216 0 0 0 chr11 107568534 107568558 -14275298 + (CCCTG)n Simple_repeat Simple_repeat 2 25 0 1 1405 701 272 61 47 chr11 107568728 107568940 -14274916 - ID_B1 SINE B4 0 224 10 1 1405 737 338 49 4 chr11 107570405 107570669 -14273187 + B4A SINE B4 13 288 -4 1 1405 441 110 0 0 chr11 107570677 107570750 -14273106 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1405 940 135 7 13 chr11 107571153 107571303 -14272553 + B1_Mur1 SINE Alu 1 149 0 1 1405 671 195 0 0 chr11 107572456 107572579 -14271277 + MTD LTR MaLR 117 239 -180 1 1405 182 375 94 0 chr11 107572585 107572681 -14271175 + MIR SINE MIR 45 149 -113 1 1405 1647 201 37 78 chr11 107573063 107573193 -14270663 + MTD LTR MaLR 1 111 -308 1 1405 782 262 44 5 chr11 107573193 107573396 -14270460 - B3 SINE B2 -5 211 1 1 1405 1647 201 37 78 chr11 107573396 107573702 -14270154 + MTD LTR MaLR 112 419 0 1 1405 257 232 87 0 chr11 107573748 107573817 -14270039 - MTE2a LTR MaLR -101 278 204 1 1405 427 271 225 16 chr11 107574030 107574341 -14269515 - L1M4 LINE L1 -4912 1733 1358 1 1405 407 234 116 9 chr11 107574404 107574516 -14269340 + RSINE1 SINE B4 3 126 -39 1 1405 554 228 63 42 chr11 107574679 107574821 -14269035 - B1_Mur2 SINE Alu 0 149 5 1 1405 323 264 290 21 chr11 107574841 107575027 -14268829 - L1M4 LINE L1 -5501 1144 909 1 1405 357 264 38 4 chr11 107575200 107575332 -14268524 - L1M4 LINE L1 -6336 309 74 1 1405 225 0 0 0 chr11 107575424 107575449 -14268407 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1405 309 303 36 9 chr11 107576722 107576832 -14267024 + MER45A DNA Tip100 57 169 -9 1 1405 996 157 141 5 chr11 107576862 107577061 -14266795 - URR1A DNA MER1_type 0 226 1 1 1405 183 80 0 0 chr11 107578019 107578044 -14265812 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1405 216 0 0 0 chr11 107578130 107578154 -14265702 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1405 712 204 102 6 chr11 107578681 107578858 -14264998 - ID_B1 SINE B4 -21 203 10 1 1405 373 301 26 0 chr11 107579448 107579561 -14264295 + MTEb LTR MaLR 249 364 -15 1 1405 229 321 21 7 chr11 107580708 107580820 -14263036 + MIRc SINE MIR 37 154 -114 1 1405 734 272 138 41 chr11 107580883 107581201 -14262655 + MLT1A LTR MaLR 1 349 -25 1 1405 180 0 0 0 chr11 107581417 107581437 -14262419 + (TGGA)n Simple_repeat Simple_repeat 1 20 0 1 1405 456 350 108 11 chr11 107582019 107582279 -14261577 + MER77 LTR ERVL 218 502 -105 1 1405 869 174 7 0 chr11 107582686 107582830 -14261026 + B1_Mur3 SINE Alu 3 147 -2 1 1405 1294 72 5 27 chr11 107582844 107583030 -14260826 - B2_Mm2 SINE B2 -10 185 4 1 1405 430 281 57 14 chr11 107583079 107583220 -14260636 - RSINE1 SINE B4 -13 152 6 1 1405 326 225 130 15 chr11 107583226 107583357 -14260499 - B1F SINE Alu 0 149 4 1 1405 1602 191 52 39 chr11 107583391 107583445 -14260411 - ORR1D1 LTR MaLR -5 369 321 1 1405 1450 130 0 13 chr11 107583445 107583671 -14260185 + URR1B DNA MER1_type 1 223 -2 1 1405 1602 191 52 39 chr11 107583671 107583814 -14260042 - ORR1D1 LTR MaLR -54 320 165 1 1405 411 21 0 0 chr11 107583814 107583862 -14259994 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1405 1602 191 52 39 chr11 107583862 107584027 -14259829 - ORR1D1 LTR MaLR -210 164 2 1 1405 1898 122 44 79 chr11 107584223 107584589 -14259267 + ORR1B1 LTR MaLR 41 393 -1 1 1405 345 24 0 0 chr11 107585743 107585785 -14258071 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 1 1405 477 294 59 0 chr11 107585790 107585943 -14257913 - MLT1D LTR MaLR -237 268 107 1 1405 411 21 0 0 chr11 107586887 107586935 -14256921 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1405 323 189 141 40 chr11 107586939 107587038 -14256818 - RSINE1 SINE B4 -55 110 2 1 1405 1217 252 47 56 chr11 107587289 107587341 -14256515 + MTE2b LTR MaLR 42 91 -288 1 1405 1249 156 0 78 chr11 107587341 107587585 -14256271 - URR1B DNA MER1_type 0 225 1 1 1405 1217 252 47 56 chr11 107587585 107587872 -14255984 + MTE2b LTR MaLR 92 378 -1 1 1405 346 262 0 24 chr11 107588092 107588174 -14255682 + ID4_ SINE ID 4 83 0 1 1405 625 268 61 42 chr11 107588210 107588424 -14255432 + ID_B1 SINE B4 1 218 -6 1 1405 201 133 0 0 chr11 107588513 107588543 -14255313 + (CATG)n Simple_repeat Simple_repeat 1 30 0 1 1405 954 262 16 29 chr11 107588576 107588820 -14255036 - B4A SINE B4 0 292 52 1 1405 965 153 0 0 chr11 107588902 107589052 -14254804 - B1_Mur4 SINE Alu 0 150 1 1 1405 383 0 21 0 chr11 107589078 107589125 -14254731 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1405 756 236 22 22 chr11 107589699 107589881 -14253975 - B3A SINE B2 -15 183 2 1 1405 198 0 0 0 chr11 107590821 107590843 -14253013 + (CAGGC)n Simple_repeat Simple_repeat 2 23 0 1 1405 229 333 99 0 chr11 107591198 107591279 -14252577 + MLT1J1 LTR MaLR 75 163 -285 1 1405 274 290 133 61 chr11 107591313 107591478 -14252378 + MLT1J1 LTR MaLR 268 444 0 1 1405 1155 61 0 0 chr11 107591579 107591726 -14252130 + B1_Mm SINE Alu 1 147 0 1 1405 261 0 0 0 chr11 107591726 107591755 -14252101 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1405 809 174 0 34 chr11 107591768 107591917 -14251939 + B1_Mur4 SINE Alu 6 149 -1 1 1405 186 43 0 0 chr11 107591921 107591944 -14251912 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 1 1405 742 236 148 27 chr11 107591989 107592246 -14251610 - B4 SINE B4 -4 288 1 1 1405 1059 52 0 0 chr11 107595047 107595181 -14248675 + (TTTC)n Simple_repeat Simple_repeat 1 134 0 1 1405 609 239 43 0 chr11 107596771 107596909 -14246947 - ID_B1 SINE B4 0 224 81 1 1405 229 263 18 0 chr11 107596918 107596975 -14246881 + CT-rich Low_complexity Low_complexity 2 59 0 1 1405 396 209 23 0 chr11 107596975 107597061 -14246795 - ID_B1 SINE B4 -1 223 136 1 1405 982 175 56 20 chr11 107597075 107597273 -14246583 - B3 SINE B2 -5 211 7 1 1405 303 224 0 29 chr11 107597276 107597345 -14246511 - B1_Mus1 SINE Alu -81 67 1 1 1405 426 319 80 0 chr11 107597371 107597559 -14246297 - MER2 DNA MER2_type 0 345 143 1 1405 241 256 65 22 chr11 107598602 107598694 -14245162 + MIRc SINE MIR 52 147 -121 1 1405 347 264 37 81 chr11 107598825 107598986 -14244870 - RSINE1 SINE B4 -9 156 3 1 1405 287 284 74 41 chr11 107598987 107599108 -14244748 - MER44D DNA MER2_type -113 592 469 1 1405 308 294 91 9 chr11 107599079 107599189 -14244667 - MER44D DNA MER2_type -586 119 1 1 1405 230 250 118 59 chr11 107599518 107599620 -14244236 + MLT1E2 LTR MaLR 52 159 -468 1 1405 234 276 38 38 chr11 107601294 107601373 -14242483 + LTR33 LTR ERVL 26 104 -411 1 1405 247 151 19 0 chr11 107602311 107602364 -14241492 - Lx3C LINE L1 -3 6973 6920 1 1405 267 227 13 13 chr11 107602369 107602445 -14241411 - Lx3C LINE L1 -239 6737 6662 1 1405 482 283 0 9 chr11 107602564 107602678 -14241178 - ID_B1 SINE B4 -5 219 107 1 1405 724 205 45 62 chr11 107602711 107602935 -14240921 - ID_B1 SINE B4 0 224 5 1 1405 3072 58 0 10 chr11 107603782 107604185 -14239671 + MTB LTR MaLR 1 399 -1 1 1405 294 235 0 0 chr11 107605389 107605470 -14238386 + CT-rich Low_complexity Low_complexity 1 81 0 1 1405 847 233 38 51 chr11 107605797 107606032 -14237824 + B4A SINE B4 1 232 -60 1 1405 195 280 0 0 chr11 107606357 107606450 -14237406 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 1405 810 313 106 22 chr11 107606571 107607120 -14236736 - L1MD1 LINE L1 -53 6189 5595 1 1405 325 160 20 13 chr11 107607126 107607198 -14236658 - B1_Mus2 SINE Alu -38 111 38 1 1405 216 360 23 117 chr11 107607127 107607258 -14236598 - B4 SINE B4 -93 199 29 1 1405 306 269 0 0 chr11 107607258 107607325 -14236531 - ID4 SINE ID -2 81 15 1 1405 216 360 23 117 chr11 107607325 107607341 -14236515 - B4 SINE B4 -93 28 6 1 1405 528 180 155 8 chr11 107607393 107607522 -14236334 - B1_Mur1 SINE Alu 0 149 2 1 1405 354 45 0 0 chr11 107607621 107607665 -14236191 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1405 851 276 15 130 chr11 107607669 107607993 -14235863 - B4 SINE B4 0 292 6 1 1405 223 294 0 0 chr11 107608161 107608212 -14235644 + C-rich Low_complexity Low_complexity 2 52 0 1 1405 503 308 73 82 chr11 107608326 107608669 -14235187 - ORR1E LTR MaLR 0 359 20 1 1405 244 216 0 0 chr11 107609051 107609102 -14234754 + B4A SINE B4 242 292 0 1 1405 963 16 8 16 chr11 107609120 107609247 -14234609 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 1405 300 68 183 17 chr11 107609248 107609308 -14234548 + B1_Mur1 SINE Alu 79 148 -1 2 1405 194 293 86 0 chr11 107609437 107609495 -14234361 - L3 LINE CR1 -732 3757 3695 2 1405 395 119 15 0 chr11 107609907 107609974 -14233882 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1406 497 221 0 6 chr11 107610265 107610442 -14233414 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1406 271 352 0 45 chr11 107610989 107611099 -14232757 + LTR16E2 LTR ERVL 267 371 -197 2 1406 224 265 24 12 chr11 107611731 107611815 -14232041 + (TTCA)n Simple_repeat Simple_repeat 2 86 0 2 1406 388 306 11 40 chr11 107611821 107612177 -14231679 + (TATATG)n Simple_repeat Simple_repeat 1 345 0 2 1406 222 118 0 0 chr11 107612177 107612211 -14231645 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1406 238 301 5 59 chr11 107612211 107612229 -14231627 + (TATATG)n Simple_repeat Simple_repeat 2 19 0 2 1406 262 196 0 0 chr11 107612242 107612288 -14231568 - PB1D10 SINE Alu -27 90 45 2 1406 227 79 0 26 chr11 107612288 107612327 -14231529 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1406 199 245 43 7 chr11 107612343 107612483 -14231373 + (TATATG)n Simple_repeat Simple_repeat 6 150 0 2 1406 801 286 75 22 chr11 107612516 107612784 -14231072 - B4A SINE B4 -10 282 1 2 1406 315 0 0 0 chr11 107613142 107613177 -14230679 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1406 472 250 9 9 chr11 107613273 107613382 -14230474 + PB1D10 SINE Alu 1 109 -8 2 1406 729 175 42 0 chr11 107613409 107613452 -14230404 + B4A SINE B4 42 90 -202 2 1406 358 179 68 51 chr11 107613452 107613570 -14230286 + PB1D9 SINE Alu 1 120 0 2 1406 377 313 96 9 chr11 107613566 107613763 -14230093 + B4A SINE B4 81 290 -2 2 1406 279 0 0 0 chr11 107613848 107613879 -14229977 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1406 492 18 0 0 chr11 107613879 107613935 -14229921 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1406 573 296 0 36 chr11 107614682 107614847 -14229009 - RSINE1 SINE B4 -5 160 2 2 1406 678 101 0 0 chr11 107615910 107616019 -14227837 + (GGA)n Simple_repeat Simple_repeat 2 110 0 2 1406 190 106 21 21 chr11 107616043 107616091 -14227765 + (TTTTTG)n Simple_repeat Simple_repeat 3 50 0 2 1406 911 257 39 5 chr11 107616216 107616423 -14227433 - ID_B1 SINE B4 -9 215 2 2 1406 3019 33 100 0 chr11 107617472 107617832 -14226024 - MTA_Mm LTR MaLR 0 396 1 2 1406 572 317 11 22 chr11 107617866 107618050 -14225806 + MTE-int LTR MaLR 682 863 -717 2 1406 1852 209 65 17 chr11 107618030 107618503 -14225353 + RLTR20B3 LTR ERVK 28 523 -54 2 1406 252 0 0 0 chr11 107618503 107618531 -14225325 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1406 416 306 53 44 chr11 107618531 107618572 -14225284 + RLTR20B3 LTR ERVK 525 567 -1 2 1406 1890 275 154 11 chr11 107618572 107619213 -14224643 + MTE-int LTR MaLR 844 1576 -4 2 1406 1132 225 98 3 chr11 107619233 107619519 -14224337 + MTEb LTR MaLR 67 379 0 2 1406 619 82 20 10 chr11 107619549 107619648 -14224208 + (TCCC)n Simple_repeat Simple_repeat 2 101 0 2 1406 731 149 16 0 chr11 107619669 107619790 -14224066 - B1_Mus2 SINE Alu -5 142 20 2 1406 834 81 117 7 chr11 107620549 107620686 -14223170 + B2_Mm2 SINE B2 1 152 -43 2 1406 192 40 0 0 chr11 107620691 107620716 -14223140 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 1406 1366 241 45 98 chr11 107620876 107621276 -14222580 - MTE2a LTR MaLR 0 379 1 2 1406 216 219 0 0 chr11 107621604 107621645 -14222211 + T-rich Low_complexity Low_complexity 1 41 0 2 1406 314 360 43 0 chr11 107621819 107621983 -14221873 - MIR3 SINE MIR -27 181 11 2 1406 341 319 100 61 chr11 107622263 107622493 -14221363 + MIR SINE MIR 6 244 -18 2 1406 402 174 0 14 chr11 107622811 107622881 -14220975 + ID4 SINE ID 3 71 -12 2 1406 405 0 0 0 chr11 107623637 107623682 -14220174 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1406 305 24 24 0 chr11 107624709 107624751 -14219105 + (TGG)n Simple_repeat Simple_repeat 2 44 0 2 1406 1272 113 105 24 chr11 107624918 107625127 -14218729 + URR1A DNA MER1_type 1 226 0 2 1406 208 270 12 17 chr11 107625312 107625389 -14218467 - MIRc SINE MIR -89 187 106 2 1406 326 307 96 45 chr11 107625665 107625680 -14218176 - RSINE1 SINE B4 0 165 151 2 1406 1080 38 0 0 chr11 107625680 107625813 -14218043 + (GA)n Simple_repeat Simple_repeat 1 133 0 2 1406 326 307 96 45 chr11 107625813 107625954 -14217902 - RSINE1 SINE B4 -15 150 1 2 1406 537 44 0 0 chr11 107625958 107626026 -14217830 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1406 598 242 8 15 chr11 107626059 107626189 -14217667 - ID_B1 SINE B4 0 224 96 2 1406 510 242 98 69 chr11 107626659 107626832 -14217024 + MER2 DNA MER2_type 5 182 -163 2 1406 487 305 46 6 chr11 107626972 107627147 -14216709 + MER2 DNA MER2_type 126 307 -38 2 1406 785 253 89 35 chr11 107627766 107628024 -14215832 - B4 SINE B4 -18 274 3 2 1406 407 287 205 14 chr11 107628941 107629180 -14214676 - B4A SINE B4 -3 289 5 2 1406 225 292 55 22 chr11 107629239 107629330 -14214526 - MIRb SINE MIR -68 200 107 2 1406 226 298 0 0 chr11 107630544 107630601 -14213255 - Arthur1 DNA Tip100 0 3947 3891 2 1406 297 0 0 0 chr11 107630601 107630634 -14213222 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 2 1406 239 50 50 0 chr11 107630654 107630694 -14213162 + (CTGGGG)n Simple_repeat Simple_repeat 4 45 0 2 1406 456 255 34 101 chr11 107631015 107631051 -14212805 - B2_Mm2 SINE B2 0 195 161 2 1406 819 106 14 7 chr11 107631051 107631194 -14212662 + (TG)n Simple_repeat Simple_repeat 2 145 0 2 1406 646 253 24 55 chr11 107631194 107631366 -14212490 - B3A SINE B2 -36 162 1 2 1406 864 275 77 9 chr11 107631549 107631872 -14211984 + MER2 DNA MER2_type 1 345 0 2 1406 385 364 0 13 chr11 107633070 107633226 -14210630 - MIRb SINE MIR -72 196 43 2 1406 391 331 63 110 chr11 107633405 107633724 -14210132 + MLT1E LTR MaLR 325 628 -25 2 1406 235 309 20 78 chr11 107634134 107634236 -14209620 + LTR33A LTR ERVL 39 134 -386 2 1406 240 111 0 0 chr11 107635947 107635983 -14207873 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2 1406 259 183 50 0 chr11 107636220 107636280 -14207576 - L1ME3 LINE L1 -81 6081 6019 2 1406 373 328 52 54 chr11 107637122 107637380 -14206476 + MIR SINE MIR 1 262 -6 2 1406 199 194 48 0 chr11 107637799 107637861 -14205995 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 2 1406 254 231 221 0 chr11 107639085 107639189 -14204667 - L1ME4a LINE L1 -33 6091 5965 2 1406 864 277 23 23 chr11 107639544 107639803 -14204053 + B4A SINE B4 4 262 -30 2 1406 359 21 21 0 chr11 107639820 107639868 -14203988 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1406 232 283 2 17 chr11 107640805 107640874 -14202982 - MIRm SINE MIR -106 156 88 2 1406 351 113 0 0 chr11 107640878 107640931 -14202925 + (GGA)n Simple_repeat Simple_repeat 1 53 0 2 1406 577 328 64 26 chr11 107641461 107641727 -14202129 + B4A SINE B4 1 276 -16 2 1406 396 0 0 0 chr11 107641727 107641771 -14202085 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1406 519 273 140 17 chr11 107641834 107642013 -14201843 - ID_B1 SINE B4 -20 204 4 2 1406 1044 165 0 0 chr11 107642238 107642713 -14201143 + (CCCA)n Simple_repeat Simple_repeat 1 475 0 2 1406 426 39 0 0 chr11 107642723 107642775 -14201081 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 2 1406 348 24 0 0 chr11 107643259 107643300 -14200556 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1406 223 247 13 52 chr11 107643614 107643691 -14200165 - MIR3 SINE MIR -44 164 91 2 1406 1028 71 57 0 chr11 107643795 107643935 -14199921 - B1_Mus1 SINE Alu 0 148 1 2 1406 183 314 70 0 chr11 107644010 107644096 -14199760 - L2 LINE L2 -550 2869 2778 2 1406 301 292 17 26 chr11 107644448 107644564 -14199292 + GA-rich Low_complexity Low_complexity 1 115 0 2 1406 194 394 20 0 chr11 107644589 107644688 -14199168 - MIR SINE MIR -86 122 22 2 1406 268 304 101 20 chr11 107645158 107645306 -14198550 - MIR3 SINE MIR -11 197 38 2 1406 248 379 0 0 chr11 107645736 107645876 -14197980 + (TAGG)n Simple_repeat Simple_repeat 2 141 0 2 1406 360 363 0 0 chr11 107645904 107646083 -14197773 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 2 1406 346 369 0 0 chr11 107646144 107646323 -14197533 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 2 1406 346 369 0 0 chr11 107646384 107646563 -14197293 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 2 1406 241 327 96 0 chr11 107646607 107646711 -14197145 + PB1D10 SINE Alu 4 117 0 2 1406 755 229 55 86 chr11 107646713 107646933 -14196923 + ID_B1 SINE B4 3 215 -9 2 1406 385 256 68 0 chr11 107647767 107647884 -14195972 + MER20 DNA MER1_type 33 157 -62 2 1406 327 104 0 0 chr11 107648185 107648233 -14195623 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 2 1406 554 216 9 0 chr11 107648371 107648482 -14195374 + ID_B1 SINE B4 113 224 0 2 1406 207 235 0 0 chr11 107648799 107648850 -14195006 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 2 1406 952 224 34 19 chr11 107649389 107649594 -14194262 + ID_B1 SINE B4 1 208 -16 2 1406 375 336 90 81 chr11 107649747 107649842 -14194014 + MLT1A LTR MaLR 1 93 -281 2 1406 2542 75 19 0 chr11 107649842 107650162 -14193694 + ORR1A2 LTR MaLR 2 327 0 2 1406 375 336 90 81 chr11 107650162 107650387 -14193469 + MLT1A LTR MaLR 94 324 -50 2 1406 202 328 0 0 chr11 107650585 107650649 -14193207 + MIR SINE MIR 114 177 -85 2 1406 399 250 13 38 chr11 107652464 107652622 -14191234 + (TG)n Simple_repeat Simple_repeat 1 154 0 2 1406 365 135 22 22 chr11 107652637 107652728 -14191128 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1406 29 28 0 0 chr11 107655060 107655096 -14188760 + GC_rich Low_complexity Low_complexity 1 36 0 2 1406 215 158 26 0 chr11 107655502 107655540 -14188316 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1406 22 35 0 0 chr11 107655600 107655629 -14188227 + GC_rich Low_complexity Low_complexity 1 29 0 2 1406 193 29 0 56 chr11 107655798 107655834 -14188022 + (CCCG)n Simple_repeat Simple_repeat 2 35 0 2 1406 34 89 0 0 chr11 107655842 107655932 -14187924 + GC_rich Low_complexity Low_complexity 1 90 0 2 1406 228 67 0 0 chr11 107656020 107656050 -14187806 + (CGG)n Simple_repeat Simple_repeat 2 31 0 2 1406 246 275 18 27 chr11 107656070 107656182 -14187674 + C-rich Low_complexity Low_complexity 2 112 0 2 1406 180 158 0 0 chr11 107657742 107657780 -14186076 + C-rich Low_complexity Low_complexity 1 38 0 2 1406 181 253 38 62 chr11 107661319 107661399 -14182457 + MIR SINE MIR 40 117 -91 3 1406 381 311 8 0 chr11 107662158 107662280 -14181576 + B1F SINE Alu 2 124 -25 3 1406 785 252 91 67 chr11 107662298 107662583 -14181273 + B4A SINE B4 1 292 0 3 1406 180 236 82 14 chr11 107663387 107663460 -14180396 + MER5B DNA MER1_type 98 175 -3 3 1406 320 282 90 58 chr11 107666023 107666211 -14177645 + MLT1C LTR MaLR 2 195 -272 3 1406 271 176 0 0 chr11 107666254 107666305 -14177551 + ORR1B2 LTR MaLR 55 105 -262 3 1406 552 15 0 0 chr11 107666410 107666475 -14177381 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1406 1999 153 56 34 chr11 107666551 107666929 -14176927 - ORR1B1 LTR MaLR -8 386 1 3 1406 216 0 0 0 chr11 107666976 107667000 -14176856 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1406 261 0 0 0 chr11 107667000 107667029 -14176827 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1406 297 286 0 41 chr11 107667031 107667104 -14176752 + B4A SINE B4 110 179 -113 3 1406 254 261 87 43 chr11 107667232 107667324 -14176532 + MLT1C LTR MaLR 280 375 -15 3 1406 1452 78 5 5 chr11 107668044 107668236 -14175620 - B2_Mm1a SINE B2 -1 192 1 3 1406 501 250 0 16 chr11 107668356 107668478 -14175378 - PB1D9 SINE Alu 0 120 1 3 1406 234 276 51 38 chr11 107668642 107668721 -14175135 + L2b LINE L2 3296 3375 0 3 1406 255 250 0 67 chr11 107669810 107669870 -14173986 + MLT1E2 LTR MaLR 2 57 -570 3 1406 733 199 152 6 chr11 107669976 107670153 -14173703 - B3 SINE B2 -12 204 2 3 1406 733 249 25 25 chr11 107670220 107670418 -14173438 + MER21B LTR ERV1 554 751 -112 3 1406 202 220 9 165 chr11 107670639 107670748 -14173108 - L2 LINE L2 -511 2908 2817 3 1406 307 255 106 0 chr11 107671570 107671664 -14172192 - MIRb SINE MIR -115 153 50 3 1406 572 284 33 139 chr11 107671664 107671938 -14171918 + B4A SINE B4 1 245 -47 3 1406 888 82 0 0 chr11 107671962 107672097 -14171759 + (CA)n Simple_repeat Simple_repeat 2 136 0 3 1406 667 282 78 19 chr11 107672935 107673141 -14170715 + ID_B1 SINE B4 1 218 -6 3 1406 209 325 0 111 chr11 107674484 107674619 -14169237 - L2c LINE L2 0 3387 3268 3 1406 2692 130 7 9 chr11 107675135 107675555 -14168301 + MTC LTR MaLR 1 419 -2 3 1406 319 331 74 31 chr11 107675653 107675815 -14168041 - MLT1J LTR MaLR -108 404 236 3 1406 248 53 26 0 chr11 107675898 107675936 -14167920 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1406 472 255 0 62 chr11 107675939 107676052 -14167804 - PB1D10 SINE Alu 0 117 12 3 1406 387 0 0 0 chr11 107676196 107676239 -14167617 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1406 1166 317 50 54 chr11 107676721 107677181 -14166675 - MT2A LTR ERVL -71 462 5 3 1406 242 200 0 18 chr11 107677498 107677554 -14166302 - MLT1I LTR MaLR 0 411 357 3 1406 236 336 70 54 chr11 107677681 107677810 -14166046 - MLT1I LTR MaLR -233 178 48 3 1406 468 0 0 0 chr11 107678039 107678091 -14165765 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1406 580 264 20 20 chr11 107678102 107678249 -14165607 - B4A SINE B4 -95 197 51 3 1406 694 262 41 36 chr11 107678775 107678969 -14164887 + ID_B1 SINE B4 1 195 -29 3 1406 504 206 21 0 chr11 107680387 107680528 -14163328 + (TG)n Simple_repeat Simple_repeat 1 144 0 3 1406 2097 100 6 91 chr11 107680532 107680883 -14162973 - ORR1A4 LTR MaLR -8 321 1 3 1406 285 278 14 0 chr11 107680884 107680956 -14162900 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 3 1406 664 202 0 22 chr11 107680959 107681141 -14162715 + (TATG)n Simple_repeat Simple_repeat 1 178 0 3 1406 909 263 45 5 chr11 107681157 107681356 -14162500 - B4A SINE B4 0 292 86 3 1406 363 188 0 38 chr11 107681871 107681976 -14161880 + CT-rich Low_complexity Low_complexity 4 104 0 3 1406 1142 234 72 7 chr11 107681977 107682253 -14161603 - MER2 DNA MER2_type -28 317 24 3 1406 25 65 0 0 chr11 107682369 107682415 -14161441 + AT_rich Low_complexity Low_complexity 1 46 0 3 1406 1066 255 85 14 chr11 107682416 107682710 -14161146 + MTEa LTR MaLR 1 315 -64 3 1406 555 164 0 0 chr11 107682795 107682899 -14160957 + CT-rich Low_complexity Low_complexity 4 107 0 3 1406 297 312 12 0 chr11 107682919 107682999 -14160857 - ID4_ SINE ID -1 82 2 3 1406 5899 110 26 8 chr11 107683005 107683876 -14159980 + RMER12 LTR ERVK 1 1284 -288 3 1406 369 62 30 15 chr11 107683876 107683942 -14159914 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1406 947 254 111 99 chr11 107683942 107684224 -14159632 + RMER12 LTR ERVK 1285 1572 0 3 1406 21 36 0 0 chr11 107684562 107684590 -14159266 + AT_rich Low_complexity Low_complexity 1 28 0 3 1406 1044 242 22 22 chr11 107685611 107685843 -14158013 + ORR1E LTR MaLR 6 237 -122 3 1406 2392 135 83 0 chr11 107685887 107686272 -14157584 - MTC LTR MaLR -4 417 1 3 1406 6139 175 56 25 chr11 107686272 107686790 -14157066 - MTC-int LTR MaLR 0 1258 740 3 1406 3185 155 78 24 chr11 107686790 107687370 -14156486 + RMER19C LTR ERVK 1 611 0 3 1406 6139 175 56 25 chr11 107687370 107688066 -14155790 - MTC-int LTR MaLR -519 739 9 3 1406 198 129 16 31 chr11 107688067 107688131 -14155725 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 3 1406 2136 171 76 3 chr11 107688131 107688512 -14155344 - MTC LTR MaLR -8 413 5 3 1406 383 204 8 136 chr11 107688518 107688643 -14155213 + ORR1E LTR MaLR 253 361 -18 3 1406 536 284 15 15 chr11 107688687 107688823 -14155033 + 7SK RNA RNA 1 136 -195 3 1406 435 243 25 89 chr11 107688898 107689062 -14154794 + MLT1N2 LTR MaLR 55 179 -383 3 1406 396 350 45 0 chr11 107689633 107689790 -14154066 + MIRb SINE MIR 1 164 -104 3 1406 299 314 0 29 chr11 107690048 107690153 -14153703 + CT-rich Low_complexity Low_complexity 6 107 0 3 1406 629 170 20 0 chr11 107690731 107690831 -14153025 + B1F2 SINE Alu 46 147 -2 3 1406 234 300 112 13 chr11 107690852 107691004 -14152852 - L1MC LINE L1 -2013 5869 5703 3 1406 228 35 0 0 chr11 107691058 107691087 -14152769 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1406 279 343 87 71 chr11 107691116 107691370 -14152486 + RMER10B LTR ERVL 12 269 -129 3 1406 369 278 18 53 chr11 107691523 107691545 -14152311 + ID SINE ID 62 79 -145 3 1406 404 243 93 37 chr11 107691545 107691652 -14152204 + PB1D10 SINE Alu 3 115 -2 3 1406 206 143 29 0 chr11 107691683 107691718 -14152138 + CT-rich Low_complexity Low_complexity 1 36 0 3 1406 682 272 38 6 chr11 107691723 107691882 -14151974 - RSINE1 SINE B4 0 165 2 3 1406 1800 267 124 28 chr11 107692282 107692774 -14151082 + Lx9 LINE L1 6530 7052 -592 3 1406 2414 93 19 0 chr11 107692774 107693095 -14150761 + ORR1A2 LTR MaLR 1 327 0 3 1406 1800 267 124 28 chr11 107693095 107693206 -14150650 + Lx9 LINE L1 7053 7191 -453 3 1406 435 38 0 0 chr11 107693239 107693292 -14150564 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1406 5152 76 1 0 chr11 107693520 107694176 -14149680 + Lx3_Mus LINE L1 6353 7009 0 3 1406 379 39 0 0 chr11 107694190 107694241 -14149615 - Lx LINE L1 -10 6644 6594 3 1406 222 37 0 0 chr11 107694241 107694268 -14149588 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 3 1406 593 280 82 72 chr11 107694273 107694592 -14149264 + ORR1E LTR MaLR 38 359 0 3 1406 434 259 150 7 chr11 107694788 107694928 -14148928 + MER117 DNA MER1_type 1 160 -37 3 1406 468 0 0 0 chr11 107694930 107694982 -14148874 + (CAG)n Simple_repeat Simple_repeat 3 54 0 3 1406 777 128 33 79 chr11 107695969 107696121 -14147735 + B1_Mur1 SINE Alu 5 149 0 3 1406 249 338 29 0 chr11 107696127 107696263 -14147593 + L1M5 LINE L1 5646 5785 -339 3 1406 617 180 107 73 chr11 107696337 107696480 -14147376 + B3 SINE B2 1 150 -66 3 1406 459 0 0 0 chr11 107696480 107696531 -14147325 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1406 617 238 101 750 chr11 107696531 107696577 -14147279 + B3 SINE B2 139 185 -10 3 1406 609 294 34 94 chr11 107696725 107696957 -14146899 + MER34A1 LTR ERV1 47 264 -323 3 1406 769 293 190 16 chr11 107696957 107697384 -14146472 - RMER5 LTR ERV1 -1 533 33 3 1406 604 220 76 0 chr11 107697536 107697668 -14146188 + B1F2 SINE Alu 3 144 -5 3 1406 282 260 123 0 chr11 107697769 107697842 -14146014 + B3A SINE B2 12 93 -105 3 1406 201 180 0 0 chr11 107697890 107697940 -14145916 + (CAA)n Simple_repeat Simple_repeat 3 52 0 3 1406 249 33 0 0 chr11 107697977 107698007 -14145849 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1406 745 278 44 82 chr11 107700200 107700670 -14143186 - RLTR11B LTR ERVK -65 462 1 3 1406 583 299 0 7 chr11 107700694 107700832 -14143024 - B4A SINE B4 -85 207 71 3 1406 295 167 0 0 chr11 107700850 107700898 -14142958 - B4 SINE B4 -208 84 37 3 1406 226 213 0 21 chr11 107700898 107700946 -14142910 - ORR1E LTR MaLR -18 341 295 3 1406 1152 82 0 7 chr11 107700949 107701096 -14142760 + B1_Mus1 SINE Alu 3 148 0 3 1406 731 187 6 0 chr11 107701103 107701269 -14142587 + GA-rich Low_complexity Low_complexity 2 168 0 3 1406 2163 87 0 0 chr11 107701272 107701548 -14142308 - L1_Mm LINE L1 -163 5720 5445 3 1406 653 251 149 54 chr11 107701548 107701598 -14142258 - ORR1D2 LTR MaLR -2 382 327 3 1406 6480 70 11 9 chr11 107701598 107702449 -14141407 + L1_Mus3 LINE L1 5787 6638 0 3 1406 1028 223 91 50 chr11 107702449 107702747 -14141109 - ORR1D2 LTR MaLR -60 310 1 3 1406 728 269 23 23 chr11 107703376 107703464 -14140392 + B4A SINE B4 1 88 -204 3 1406 212 278 75 32 chr11 107703464 107703557 -14140299 + B1_Mus1 SINE Alu 1 97 -51 3 1406 512 115 0 9 chr11 107703610 107703715 -14140141 + (CA)n Simple_repeat Simple_repeat 2 105 0 3 1406 227 29 0 54 chr11 107703725 107703762 -14140094 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1406 2489 140 12 24 chr11 107704444 107704855 -14139001 - MTB_Mm LTR MaLR -1 406 1 3 1406 700 295 108 61 chr11 107704862 107704964 -14138892 - ORR1E LTR MaLR 0 359 235 3 1406 189 0 0 0 chr11 107704964 107704985 -14138871 + (GCATG)n Simple_repeat Simple_repeat 1 21 0 3 1406 700 295 108 61 chr11 107704985 107705225 -14138631 - ORR1E LTR MaLR -125 234 1 3 1406 342 234 149 0 chr11 107706266 107706373 -14137483 + MER21B LTR ERV1 88 210 -653 3 1406 233 311 234 36 chr11 107706586 107706753 -14137103 + MER21B LTR ERV1 486 685 -178 3 1406 326 222 56 60 chr11 107707242 107707364 -14136492 - MLT1H LTR MaLR -369 180 49 3 1406 438 250 42 0 chr11 107707380 107707476 -14136380 - ID_B1 SINE B4 -5 219 120 4 1406 521 213 21 15 chr11 107708057 107708396 -14135460 + (TG)n Simple_repeat Simple_repeat 1 341 0 4 1406 254 87 0 21 chr11 107708396 107708443 -14135413 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1406 440 232 151 50 chr11 107708857 107709016 -14134840 + MIRb SINE MIR 26 200 -68 4 1406 1363 266 84 25 chr11 107709871 107710229 -14133627 - MTEb LTR MaLR 0 379 1 4 1406 189 107 0 0 chr11 107710381 107710409 -14133447 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1406 229 268 58 58 chr11 107711735 107711822 -14132034 - MLT1K LTR MaLR 0 595 509 4 1406 426 39 0 0 chr11 107711984 107712036 -14131820 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1406 403 259 43 35 chr11 107712101 107712116 -14131740 - B1_Mm SINE Alu -27 120 4 4 1406 544 240 0 10 chr11 107712116 107712217 -14131639 - B4 SINE B4 -104 188 89 4 1406 352 198 146 12 chr11 107713073 107713155 -14130701 + 5S rRNA rRNA 23 115 -6 4 1406 366 154 0 0 chr11 107713170 107713248 -14130608 + (CAAG)n Simple_repeat Simple_repeat 2 79 0 4 1406 1163 85 4 4 chr11 107713724 107713951 -14129905 + (TG)n Simple_repeat Simple_repeat 1 227 0 4 1406 445 191 117 0 chr11 107714083 107714177 -14129679 - B1_Mus2 SINE Alu 0 147 43 4 1406 684 226 26 9 chr11 107714185 107714367 -14129489 - B3 SINE B2 -3 192 2 4 1406 1071 269 128 23 chr11 107714393 107714448 -14129408 - MTEb LTR MaLR 0 379 326 4 1406 2253 221 41 2 chr11 107714448 107714959 -14128897 + MT2A LTR ERVL 1 531 -2 4 1406 1071 269 128 23 chr11 107714959 107715246 -14128610 - MTEb LTR MaLR -54 325 1 4 1406 429 216 0 0 chr11 107715500 107715574 -14128282 + PB1D10 SINE Alu 27 100 -17 4 1406 588 200 0 0 chr11 107715650 107715750 -14128106 - B1_Mur1 SINE Alu -16 133 34 4 1406 684 200 0 0 chr11 107715821 107715991 -14127865 + GA-rich Low_complexity Low_complexity 2 171 0 4 1406 285 353 36 7 chr11 107716095 107716232 -14127624 + MER2B DNA MER2_type 196 336 0 4 1406 1172 93 0 6 chr11 107717637 107717810 -14126046 + (TTCTCC)n Simple_repeat Simple_repeat 3 174 0 4 1406 243 0 0 0 chr11 107717824 107717851 -14126005 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1406 285 329 65 83 chr11 107718119 107718348 -14125508 + RMER15 LTR ERVL 346 570 -5 4 1406 515 287 43 29 chr11 107718364 107718504 -14125352 - RSINE1 SINE B4 -19 146 5 4 1406 973 288 59 28 chr11 107718628 107718950 -14124906 + MER2 DNA MER2_type 8 339 -6 4 1406 1814 290 76 32 chr11 107719214 107719898 -14123958 - Lx9 LINE L1 -150 7494 6781 4 1406 831 293 56 28 chr11 107719896 107720145 -14123711 + Lx9 LINE L1 6523 6778 -866 4 1406 475 78 26 0 chr11 107720166 107720243 -14123613 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 4 1406 583 13 13 13 chr11 107720249 107720326 -14123530 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 4 1406 373 222 49 0 chr11 107720350 107720431 -14123425 - ID_B1 SINE B4 -53 171 87 4 1406 513 0 0 0 chr11 107720480 107720537 -14123319 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 1406 497 132 28 9 chr11 107720617 107720724 -14123132 - L1_Mus2 LINE L1 -14 6552 6444 4 1406 260 319 0 14 chr11 107720917 107720987 -14122869 + L2b LINE L2 3103 3171 -204 4 1406 180 200 0 0 chr11 107721305 107721350 -14122506 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1406 231 273 0 0 chr11 107721363 107721509 -14122347 + (TG)n Simple_repeat Simple_repeat 1 146 0 4 1406 814 304 14 57 chr11 107721534 107721813 -14122043 - B4A SINE B4 0 292 26 4 1406 384 311 25 8 chr11 107721839 107721959 -14121897 - B4 SINE B4 -90 202 81 4 1406 303 122 0 0 chr11 107721961 107722010 -14121846 + (TCC)n Simple_repeat Simple_repeat 3 51 0 4 1406 1247 164 9 9 chr11 107722217 107722432 -14121424 + B3 SINE B2 2 216 0 4 1406 256 321 75 15 chr11 107722639 107722772 -14121084 + L2b LINE L2 3016 3156 -219 4 1406 527 237 137 48 chr11 107722827 107723018 -14120838 - B3A SINE B2 -5 211 8 4 1406 255 281 0 0 chr11 107723762 107723826 -14120030 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1406 306 319 23 124 chr11 107723922 107724051 -14119805 - B1_Mur1 SINE Alu -33 116 1 4 1406 677 242 109 11 chr11 107724051 107724130 -14119726 - ID_B1 SINE B4 -126 98 2 4 1406 1502 138 53 215 chr11 107724423 107724874 -14118982 - ORR1C1 LTR MaLR 0 378 1 4 1406 180 273 0 0 chr11 107725664 107725708 -14118148 + L3 LINE CR1 3722 3765 -724 4 1406 538 266 49 49 chr11 107725760 107725922 -14117934 - RSINE1 SINE B4 -1 164 3 4 1406 219 236 0 83 chr11 107726023 107726083 -14117773 + B4 SINE B4 2 56 -236 4 1406 350 281 228 69 chr11 107726552 107726885 -14116971 - LTR16A LTR ERVL -63 388 3 4 1406 305 125 0 48 chr11 107727511 107727595 -14116261 + A-rich Low_complexity Low_complexity 1 80 0 4 1406 24 0 0 29 chr11 107727957 107727975 -14115881 + AT_rich Low_complexity Low_complexity 1 18 0 4 1406 1209 61 0 0 chr11 107727975 107728123 -14115733 - B1_Mus1 SINE Alu 0 148 1 4 1406 24 0 0 29 chr11 107728123 107728139 -14115717 + AT_rich Low_complexity Low_complexity 1 16 0 4 1406 301 312 52 0 chr11 107728178 107728255 -14115601 - RSINE1 SINE B4 -17 148 68 4 1406 189 0 0 0 chr11 107729865 107729886 -14113970 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 4 1406 432 320 0 7 chr11 107730322 107730473 -14113383 + (TG)n Simple_repeat Simple_repeat 1 150 0 4 1406 1037 289 52 35 chr11 107730479 107730766 -14113090 - B4A SINE B4 0 292 1 4 1406 377 294 199 6 chr11 107731175 107731356 -14112500 + MER20 DNA MER1_type 3 218 -1 4 1406 198 281 62 15 chr11 107731813 107731878 -14111978 - L2c LINE L2 -141 3246 3179 4 1406 534 185 37 9 chr11 107732355 107732464 -14111392 - B1F SINE Alu -6 143 32 4 1406 258 32 0 0 chr11 107733191 107733222 -14110634 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1406 831 231 40 23 chr11 107733266 107733439 -14110417 - B4A SINE B4 -39 253 78 4 1406 1267 28 0 0 chr11 107733459 107733603 -14110253 - B1_Mus1 SINE Alu 0 148 5 4 1406 292 273 38 38 chr11 107733613 107733693 -14110163 - ID2 SINE ID -1 82 3 4 1406 900 222 86 0 chr11 107734147 107734345 -14109511 - B3 SINE B2 0 216 2 4 1406 282 318 125 26 chr11 107735256 107735408 -14108448 + MLT1L LTR MaLR 41 207 -384 4 1406 352 296 80 81 chr11 107735667 107735933 -14107923 + MLT1L LTR MaLR 162 437 -158 4 1406 431 280 6 95 chr11 107736700 107736858 -14106998 + MLT1B LTR MaLR 1 144 -246 4 1406 945 254 46 18 chr11 107736873 107737103 -14106753 - ID_B1 SINE B4 -72 220 1 4 1406 387 240 52 10 chr11 107737167 107737264 -14106592 + MLT1B LTR MaLR 206 306 -84 4 1406 183 42 0 0 chr11 107739361 107739385 -14104471 + (GGGAA)n Simple_repeat Simple_repeat 5 28 0 4 1406 578 298 18 0 chr11 107740008 107740179 -14103677 + Charlie13b DNA Charlie 201 374 -138 4 1406 435 19 0 0 chr11 107740506 107740558 -14103298 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1406 1158 128 0 0 chr11 107740736 107741096 -14102760 + (TCCA)n Simple_repeat Simple_repeat 1 360 0 4 175 206 219 0 15 chr11 107741122 107741187 -14102669 + (TCCA)n Simple_repeat Simple_repeat 4 67 0 4 1407 255 365 153 36 chr11 107741384 107741907 -14101949 + L2 LINE L2 2280 2863 -556 4 1407 276 200 0 0 chr11 107742293 107742368 -14101488 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 4 1407 227 336 68 54 chr11 107743466 107743614 -14100242 + MER77 LTR ERVL 51 200 -407 4 1407 299 288 64 55 chr11 107743754 107743864 -14099992 + MER2B DNA MER2_type 219 329 -7 4 1407 386 154 13 0 chr11 107746116 107746194 -14097662 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 4 1407 435 238 12 0 chr11 107746196 107746276 -14097580 + MTEb LTR MaLR 23 103 -276 4 1407 303 227 15 0 chr11 107746279 107746345 -14097511 + MTEa LTR MaLR 311 377 -2 4 1407 396 307 83 51 chr11 107747542 107747758 -14096098 - MIRb SINE MIR -16 252 30 4 1407 1039 207 38 19 chr11 107749191 107749403 -14094453 + B3 SINE B2 1 216 0 4 1407 462 187 27 0 chr11 107749438 107749513 -14094343 - B1_Mur4 SINE Alu -73 77 1 4 1407 338 331 112 32 chr11 107749513 107749630 -14094226 + MLT1G LTR MaLR 25 151 -440 4 1407 270 324 36 9 chr11 107749704 107749816 -14094040 - MER20 DNA MER1_type -14 205 91 4 1407 621 72 0 0 chr11 107750309 107750392 -14093464 + (TCTCCC)n Simple_repeat Simple_repeat 1 83 0 4 1407 870 224 282 23 chr11 107750794 107751095 -14092761 + MTEa LTR MaLR 1 379 0 4 1407 350 272 50 50 chr11 107751317 107751437 -14092419 - L1MC LINE L1 -2143 5739 5620 4 1407 623 188 86 50 chr11 107752012 107752152 -14091704 + B1F SINE Alu 1 145 -4 4 1407 1646 146 50 18 chr11 107752368 107752648 -14091208 - MTD LTR MaLR -16 403 115 4 1407 873 216 108 0 chr11 107752808 107753002 -14090854 - B3 SINE B2 -1 215 1 4 1407 410 320 87 81 chr11 107753239 107753698 -14090158 + L1MEg LINE L1 120 581 -5619 4 1407 240 366 38 0 chr11 107753889 107754020 -14089836 + L1MEg LINE L1 1440 1575 -4625 4 1407 260 250 0 0 chr11 107754020 107754076 -14089780 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1407 223 275 29 14 chr11 107754081 107754151 -14089705 - RSINE1 SINE B4 0 165 95 4 1407 249 341 23 0 chr11 107754967 107755055 -14088801 - MIR SINE MIR -8 254 165 4 1407 502 220 10 0 chr11 107755130 107755243 -14088613 + B4 SINE B4 92 292 0 4 1407 223 259 0 18 chr11 107755266 107755321 -14088535 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1407 293 179 143 31 chr11 107755340 107755438 -14088418 - L1M4b LINE L1 -4681 2653 2545 4 1407 338 278 98 71 chr11 107755460 107755696 -14088160 - L1M4b LINE L1 -4865 2469 2282 4 1407 297 0 0 0 chr11 107755737 107755770 -14088086 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1407 821 199 205 0 chr11 107755872 107756043 -14087813 - B3 SINE B2 -10 206 1 4 1407 333 0 0 0 chr11 107756172 107756209 -14087647 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1407 244 268 28 0 chr11 107756522 107756593 -14087263 + GA-rich Low_complexity Low_complexity 3 75 0 4 1407 281 250 14 20 chr11 107756609 107756756 -14087100 + GA-rich Low_complexity Low_complexity 1 146 0 4 1407 531 0 0 0 chr11 107756848 107756907 -14086949 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1407 288 0 0 0 chr11 107757027 107757059 -14086797 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1407 468 300 130 28 chr11 107758435 107758682 -14085174 + B4 SINE B4 9 280 -12 5 1407 449 292 99 16 chr11 107758789 107759053 -14084803 + MTEb LTR MaLR 1 326 -53 5 1407 370 296 97 14 chr11 107759083 107759227 -14084629 - HAL1-3A_ME LINE L1 -419 2439 2284 5 1407 287 165 47 0 chr11 107759228 107759313 -14084543 + CT-rich Low_complexity Low_complexity 1 89 0 5 1407 321 283 113 21 chr11 107759314 107759455 -14084401 - HAL1-3A_ME LINE L1 -421 2437 2284 5 1407 318 180 0 0 chr11 107759455 107759516 -14084340 + CT-rich Low_complexity Low_complexity 4 64 0 5 1407 542 265 130 57 chr11 107759670 107759970 -14083886 + L1MD1 LINE L1 5910 6231 -11 5 1407 290 296 12 0 chr11 107759971 107760052 -14083804 + B4A SINE B4 1 82 -210 5 1407 267 103 0 0 chr11 107760247 107760286 -14083570 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1407 396 0 0 0 chr11 107760288 107760332 -14083524 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1407 423 0 0 0 chr11 107760332 107760378 -14083478 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1407 521 125 134 10 chr11 107760724 107760815 -14083041 + PB1D9 SINE Alu 4 107 -13 5 1407 182 33 0 62 chr11 107760815 107760847 -14083009 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5 1407 230 159 0 0 chr11 107760861 107760905 -14082951 + A-rich Low_complexity Low_complexity 1 44 0 5 1407 433 324 106 20 chr11 107761477 107761732 -14082124 - L1M5 LINE L1 -621 5543 5267 5 1407 369 320 21 23 chr11 107761734 107761936 -14081920 - Lx9 LINE L1 -183 7461 7186 5 1407 600 255 87 7 chr11 107761947 107762097 -14081759 - B3A SINE B2 -36 162 1 5 1407 392 312 91 38 chr11 107762101 107762311 -14081545 - L1M5 LINE L1 -817 5329 5109 5 1407 1490 63 0 16 chr11 107762401 107762594 -14081262 - B2_Mm2 SINE B2 -4 191 2 5 1407 29 47 0 0 chr11 107762787 107762830 -14081026 + AT_rich Low_complexity Low_complexity 1 43 0 5 1407 1180 63 0 0 chr11 107762833 107762976 -14080880 + B1_Mm SINE Alu 2 144 -3 5 1407 282 56 0 0 chr11 107762976 107763012 -14080844 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1407 413 279 70 25 chr11 107763200 107763358 -14080498 + L1ME1 LINE L1 5428 5592 -587 5 1407 348 266 57 81 chr11 107763486 107763525 -14080331 + L1ME1 LINE L1 5828 5864 -315 5 1407 464 196 84 63 chr11 107763525 107763667 -14080189 + B1_Mur1 SINE Alu 5 149 0 5 1407 348 266 57 81 chr11 107763667 107763836 -14080020 + L1ME1 LINE L1 5865 6031 -148 5 1407 864 234 153 12 chr11 107763976 107764218 -14079638 + B4 SINE B4 7 282 -10 5 1407 378 57 0 0 chr11 107764226 107764279 -14079577 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1407 479 331 0 6 chr11 107764292 107764453 -14079403 + (CA)n Simple_repeat Simple_repeat 2 161 0 5 1407 660 26 0 0 chr11 107764766 107764844 -14079012 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1407 281 256 51 0 chr11 107764927 107764941 -14078915 + ID_B1 SINE B4 141 222 -2 5 1407 321 156 109 0 chr11 107764941 107765005 -14078851 + B1F1 SINE Alu 77 147 -2 5 1407 545 296 111 8 chr11 107765146 107765381 -14078475 + MER2 DNA MER2_type 87 345 0 5 1407 296 242 15 29 chr11 107765952 107766020 -14077836 - ID4 SINE ID -11 72 6 5 1407 300 53 0 0 chr11 107766050 107766088 -14077768 + (TATG)n Simple_repeat Simple_repeat 2 39 0 5 1407 928 214 37 42 chr11 107766088 107766303 -14077553 - ID_B1 SINE B4 -10 214 1 5 1407 229 348 78 48 chr11 107768062 107768228 -14075628 + MIRb SINE MIR 26 196 -72 5 1407 263 179 89 0 chr11 107768686 107768742 -14075114 - MTD LTR MaLR -87 332 272 5 1407 237 319 35 0 chr11 107768753 107768866 -14074990 + L1MB7 LINE L1 5710 5826 -348 5 1407 828 278 43 148 chr11 107768872 107769197 -14074659 + B4A SINE B4 2 292 0 5 1407 564 219 0 0 chr11 107769197 107769325 -14074531 + (CA)n Simple_repeat Simple_repeat 1 128 0 5 1407 325 319 110 24 chr11 107769413 107769577 -14074279 + L1MB7 LINE L1 5941 6118 -66 5 1407 471 284 197 13 chr11 107769582 107769821 -14074035 + B4A SINE B4 3 285 -7 5 1407 187 189 27 0 chr11 107770389 107770426 -14073430 - L2c LINE L2 -233 3154 3117 5 1407 832 263 102 64 chr11 107770600 107770864 -14072992 + B4 SINE B4 1 274 -18 5 1407 259 320 0 0 chr11 107770881 107770956 -14072900 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1407 307 287 68 19 chr11 107771304 107771407 -14072449 - MIR SINE MIR -58 150 43 5 1407 458 278 103 43 chr11 107773098 107773282 -14070574 + MER20 DNA MER1_type 1 195 -24 5 1407 895 251 18 44 chr11 107773418 107773647 -14070209 + ID_B1 SINE B4 2 224 0 5 1407 207 0 0 0 chr11 107774076 107774099 -14069757 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1407 180 360 35 43 chr11 107775094 107775210 -14068646 - MIRc SINE MIR -140 128 14 5 1407 180 0 0 0 chr11 107776008 107776028 -14067828 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1407 396 0 0 0 chr11 107776028 107776071 -14067785 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1407 241 304 51 0 chr11 107776649 107776728 -14067128 - MIR SINE MIR -14 248 166 5 1407 188 185 19 0 chr11 107777191 107777245 -14066611 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1407 305 308 87 11 chr11 107777302 107777394 -14066462 - B4A SINE B4 -99 193 95 5 1407 233 211 0 0 chr11 107777684 107777736 -14066120 + L2b LINE L2 3321 3372 -3 5 1407 407 128 7 15 chr11 107777838 107777912 -14065944 + B1_Mur2 SINE Alu 53 129 -20 5 1407 466 193 60 0 chr11 107777908 107777991 -14065865 - B1F2 SINE Alu -61 88 1 5 1407 289 280 63 22 chr11 107778087 107778217 -14065639 + MIRc SINE MIR 9 147 -61 5 1407 1298 76 14 5 chr11 107778674 107778866 -14064990 + B2_Mm2 SINE B2 1 203 -13 5 1407 204 217 0 0 chr11 107778867 107778913 -14064943 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1407 210 118 0 0 chr11 107778902 107778936 -14064920 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1407 582 345 10 29 chr11 107780448 107780657 -14063199 + ID_B1 SINE B4 2 206 -18 5 1407 459 0 0 0 chr11 107780659 107780710 -14063146 + (GAA)n Simple_repeat Simple_repeat 1 51 0 5 1407 960 124 11 11 chr11 107780710 107780889 -14062967 + (GGA)n Simple_repeat Simple_repeat 1 179 0 5 1407 486 252 168 25 chr11 107781687 107781699 -14062157 + CYRA11_Mm Unknown Y-chromosome 161 202 -415 5 1407 1020 84 7 0 chr11 107781699 107781841 -14062015 - URR1A DNA MER1_type -1 225 83 5 1407 486 252 168 25 chr11 107781841 107781890 -14061966 + CYRA11_Mm Unknown Y-chromosome 203 392 -225 5 1407 558 301 55 32 chr11 107781995 107782215 -14061641 + B4A SINE B4 2 226 -66 5 1407 1521 262 106 8 chr11 107782731 107783108 -14060748 - MTD LTR MaLR -3 416 3 5 1407 671 341 10 65 chr11 107783651 107783943 -14059913 + B4A SINE B4 4 279 -13 5 1407 1051 255 25 11 chr11 107784868 107785142 -14058714 - B4A SINE B4 -14 278 1 5 1407 337 307 141 38 chr11 107785143 107785356 -14058500 + L1MD2 LINE L1 5910 6144 -215 5 1407 204 40 0 0 chr11 107785357 107785382 -14058474 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1407 1137 258 10 24 chr11 107785556 107785846 -14058010 + B4 SINE B4 2 287 -5 5 1407 207 176 0 0 chr11 107785902 107785936 -14057920 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 5 1407 192 97 0 0 chr11 107786043 107786074 -14057782 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1407 542 261 75 44 chr11 107786078 107786306 -14057550 - L1M5 LINE L1 -462 5662 5428 5 1407 227 350 40 32 chr11 107786306 107786430 -14057426 + L4 LINE RTE 1430 1554 -475 5 1407 228 67 0 0 chr11 107786495 107786525 -14057331 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 5 1407 458 320 32 0 chr11 107786559 107786684 -14057172 + ID_B1 SINE B4 95 223 -1 5 1407 224 365 101 32 chr11 107786776 107786994 -14056862 + L4 LINE RTE 1686 1918 -111 5 1407 238 294 36 95 chr11 107786955 107787136 -14056720 + L2b LINE L2 3263 3426 0 5 1407 483 182 222 0 chr11 107787258 107787357 -14056499 + B1F SINE Alu 1 121 -28 5 1407 338 272 30 4 chr11 107787553 107787641 -14056215 + B1F2 SINE Alu 3 92 -57 5 1407 2163 87 70 0 chr11 107787641 107787939 -14055917 + ORR1A2 LTR MaLR 1 319 -8 5 1407 1305 186 139 35 chr11 107787949 107788266 -14055590 - ORR1D2 LTR MaLR -20 350 1 5 1407 344 247 14 0 chr11 107788266 107788339 -14055517 + B1F SINE Alu 76 149 0 5 1407 1044 184 19 33 chr11 107788601 107788815 -14055041 - B3 SINE B2 -5 211 1 5 1407 288 282 137 0 chr11 107788939 107789056 -14054800 + MLT1F1 LTR MaLR 421 553 -16 5 1407 225 244 0 0 chr11 107789219 107789264 -14054592 - B3A SINE B2 -151 47 3 5 1407 299 261 11 21 chr11 107789295 107789389 -14054467 - Tigger5 DNA MER2_type 0 2406 2314 5 1407 722 276 10 51 chr11 107789551 107789578 -14054278 + B4A SINE B4 6 32 -260 5 1407 2981 57 39 8 chr11 107789578 107789966 -14053890 - MTB LTR MaLR 0 400 1 5 1407 722 276 10 51 chr11 107789966 107790133 -14053723 + B4A SINE B4 33 192 -100 5 1407 468 0 0 0 chr11 107790134 107790186 -14053670 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1407 356 258 27 126 chr11 107790257 107790368 -14053488 + B4A SINE B4 190 289 -3 5 1407 755 76 51 32 chr11 107790399 107790714 -14053142 + (CA)n Simple_repeat Simple_repeat 1 321 0 5 1407 926 297 52 12 chr11 107792829 107793081 -14050775 - B4 SINE B4 -29 263 2 5 1407 182 292 168 9 chr11 107793167 107793274 -14050582 - L2 LINE L2 -553 2866 2743 5 1407 356 327 9 0 chr11 107793327 107793440 -14050416 - MER20 DNA MER1_type -2 217 104 5 1407 485 146 70 40 chr11 107794104 107794204 -14049652 + ID_B1 SINE B4 65 167 -57 5 1407 542 198 0 0 chr11 107794204 107794295 -14049561 - RSINE1 SINE B4 -70 95 5 5 1407 358 306 42 65 chr11 107794341 107794509 -14049347 - B3A SINE B2 -11 187 24 5 1407 23 33 0 0 chr11 107795851 107795881 -14047975 + AT_rich Low_complexity Low_complexity 1 30 0 5 1407 279 71 0 0 chr11 107799035 107799077 -14044779 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 5 1407 267 103 0 0 chr11 107799273 107799312 -14044544 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1407 180 359 15 15 chr11 107800262 107800327 -14043529 - L3 LINE CR1 -1591 2898 2834 6 1407 456 260 55 55 chr11 107803028 107803191 -14040665 + MER20 DNA MER1_type 56 218 -1 6 1407 513 47 0 0 chr11 107803532 107803596 -14040260 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1407 195 254 62 16 chr11 107804481 107804545 -14039311 + L3 LINE CR1 840 906 -3583 6 1407 232 333 105 0 chr11 107805377 107805482 -14038374 + MIRc SINE MIR 139 254 -14 6 1407 1123 250 80 116 chr11 107805620 107806009 -14037847 + MTE2a LTR MaLR 5 379 0 6 1407 831 174 14 27 chr11 107807452 107807600 -14036256 + B1_Mus2 SINE Alu 1 146 -1 6 1407 224 185 19 0 chr11 107807618 107807672 -14036184 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1407 31 44 0 0 chr11 107808079 107808124 -14035732 + AT_rich Low_complexity Low_complexity 1 45 0 6 1407 265 327 0 0 chr11 107808514 107808618 -14035238 + L1MC4 LINE L1 7810 7913 -129 6 1407 299 265 10 0 chr11 107808636 107808738 -14035118 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 1407 387 225 12 0 chr11 107808852 107808932 -14034924 - ID4 SINE ID 0 83 3 6 1407 234 273 292 11 chr11 107808932 107809021 -14034835 - PB1D10 SINE Alu -1 116 3 6 1407 300 340 78 129 chr11 107810021 107810133 -14033723 - Tigger10 DNA Tigger -597 1246 1149 6 1407 189 0 0 0 chr11 107810133 107810154 -14033702 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1407 1158 70 0 0 chr11 107810154 107810296 -14033560 + B1_Mus1 SINE Alu 2 143 -5 6 1407 354 74 0 0 chr11 107810300 107810354 -14033502 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 6 1407 300 340 78 129 chr11 107810354 107810816 -14033040 - Tigger10 DNA Tigger -695 1148 699 6 1407 352 335 72 18 chr11 107812076 107812243 -14031613 + MIR SINE MIR 59 234 -28 6 1407 258 375 0 12 chr11 107813193 107813274 -14030582 + ID4_ SINE ID 1 80 -3 6 1407 213 240 40 0 chr11 107813275 107813325 -14030531 + GA-rich Low_complexity Low_complexity 1 52 0 6 1407 430 323 121 48 chr11 107813786 107814202 -14029654 + L1ME3A LINE L1 5692 6149 -24 6 1407 700 249 171 37 chr11 107814281 107814527 -14029329 - B4 SINE B4 -2 290 12 6 1407 518 268 28 21 chr11 107814737 107814882 -14028974 + B1F SINE Alu 1 146 -3 6 1407 195 42 0 0 chr11 107815163 107815187 -14028669 + (CGGG)n Simple_repeat Simple_repeat 4 27 0 6 1407 528 16 0 0 chr11 107815448 107815509 -14028347 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1407 940 282 70 11 chr11 107817449 107817721 -14026135 + B4A SINE B4 5 292 0 6 1407 230 294 15 0 chr11 107817723 107817791 -14026065 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1407 1151 113 5 0 chr11 107817825 107818038 -14025818 + (TATG)n Simple_repeat Simple_repeat 1 214 0 6 1407 467 302 111 13 chr11 107818044 107818279 -14025577 - Lx9 LINE L1 -171 7473 7216 6 1407 839 138 34 27 chr11 107818317 107818466 -14025390 - B1_Mur4 SINE Alu 0 150 1 6 1407 895 231 204 24 chr11 107820192 107820481 -14023375 + MTEb LTR MaLR 1 341 -38 6 1407 224 167 21 0 chr11 107820571 107820619 -14023237 + GA-rich Low_complexity Low_complexity 1 49 0 6 1407 184 329 69 36 chr11 107821303 107821469 -14022387 + L2b LINE L2 3216 3384 -3 6 1407 1919 182 32 24 chr11 107821610 107821981 -14021875 + ORR1D1 LTR MaLR 1 374 0 6 1407 424 328 93 54 chr11 107822077 107822357 -14021499 + MLT1J2 LTR MaLR 137 427 -21 6 1407 432 0 0 0 chr11 107823134 107823182 -14020674 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1407 544 214 212 6 chr11 107823350 107823529 -14020327 + B3 SINE B2 1 216 0 6 1407 782 268 113 0 chr11 107823727 107823921 -14019935 + B3 SINE B2 1 216 0 6 1407 263 282 0 27 chr11 107823930 107824003 -14019853 - L1M5 LINE L1 -434 5690 5620 6 1407 388 289 55 0 chr11 107824823 107824951 -14018905 - MIRb SINE MIR -55 213 79 6 1407 369 180 196 33 chr11 107825212 107825304 -14018552 - PB1D10 SINE Alu -1 116 10 6 1407 2197 145 63 3 chr11 107825750 107826117 -14017739 - ORR1B1 LTR MaLR -5 389 1 6 1407 452 227 300 14 chr11 107826347 107826557 -14017299 + MER33 DNA MER1_type 5 274 -50 6 1407 195 253 136 11 chr11 107828647 107828735 -14015121 + MIR SINE MIR 8 106 -156 6 1407 362 282 186 20 chr11 107829463 107829668 -14014188 + B4A SINE B4 48 286 -6 6 1407 201 326 40 59 chr11 107830323 107830424 -14013432 + MIRb SINE MIR 97 195 -73 6 1407 515 56 14 0 chr11 107832508 107832579 -14011277 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1407 225 244 0 109 chr11 107832754 107832846 -14011010 - MLT1A LTR MaLR -243 131 50 6 1407 243 0 0 0 chr11 107834071 107834098 -14009758 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1407 729 256 191 0 chr11 107834100 107834330 -14009526 - B4A SINE B4 -18 274 1 6 1407 1224 41 0 14 chr11 107834401 107834548 -14009308 + B1_Mus1 SINE Alu 2 146 -2 6 1407 286 340 11 0 chr11 107834601 107834695 -14009161 + MIRb SINE MIR 24 118 -150 6 1407 2220 95 72 0 chr11 107835310 107835615 -14008241 + ORR1A2 LTR MaLR 1 327 0 6 1407 1330 224 61 117 chr11 107836232 107836627 -14007229 - MTE2a LTR MaLR -1 378 6 6 1407 291 28 0 0 chr11 107836862 107836898 -14006958 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1407 598 302 148 31 chr11 107837119 107837409 -14006447 + MLT1D LTR MaLR 21 344 -161 6 1407 255 211 82 27 chr11 107837725 107837798 -14006058 - ID4_ SINE ID -6 77 1 6 1407 280 319 14 0 chr11 107838353 107838425 -14005431 + RSINE1 SINE B4 5 77 -88 6 1407 360 0 0 0 chr11 107838484 107838524 -14005332 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1407 241 333 20 20 chr11 107838687 107838785 -14005071 - MIRb SINE MIR -130 138 41 6 1407 180 0 0 0 chr11 107840009 107840029 -14003827 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 6 1407 432 86 0 0 chr11 107840632 107840702 -14003154 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1407 201 121 0 0 chr11 107842871 107842904 -14000952 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1407 538 167 2 4 chr11 107844764 107844872 -13998984 + B1_Mm SINE Alu 2 117 -32 6 1407 374 317 47 20 chr11 107844948 107845096 -13998760 - MER2 DNA MER2_type -35 310 159 6 1407 1247 249 76 84 chr11 107845645 107846027 -13997829 - MTE2a LTR MaLR 0 379 1 6 1407 249 58 38 19 chr11 107846087 107846140 -13997716 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 6 1407 372 22 0 0 chr11 107846861 107846906 -13996950 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1407 249 33 0 0 chr11 107846906 107846935 -13996921 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1407 567 255 224 2 chr11 107846956 107847156 -13996700 - B4 SINE B4 -46 246 1 6 1407 792 235 41 83 chr11 107847190 107847408 -13996448 - B3 SINE B2 -6 210 2 6 1407 294 123 0 0 chr11 107848598 107848655 -13995201 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1407 257 349 18 28 chr11 107848839 107848948 -13994908 + MLT1A1 LTR MaLR 300 407 -1 6 1407 631 110 0 32 chr11 107849111 107849205 -13994651 + BC1_Mm scRNA scRNA 1 91 -61 6 1407 960 125 35 0 chr11 107849211 107849355 -13994501 + B1_Mur2 SINE Alu 1 149 0 6 1407 298 206 14 56 chr11 107849932 107850004 -13993852 + ID_B1 SINE B4 152 220 -4 6 1407 958 137 52 47 chr11 107850047 107850239 -13993617 - B2_Mm2 SINE B2 -1 194 2 6 1407 1115 43 0 21 chr11 107850854 107850996 -13992860 - B1_Mus1 SINE Alu -1 147 9 6 1407 303 255 40 20 chr11 107850893 107851041 -13992815 - ORR1B1-int LTR MaLR -755 754 604 6 1407 254 205 11 33 chr11 107851041 107851132 -13992724 + CT-rich Low_complexity Low_complexity 3 91 0 6 1407 232 250 90 40 chr11 107851135 107851235 -13992621 + MamGypLTR1c LTR Gypsy 41 145 -658 6 1407 288 53 0 0 chr11 107851909 107851947 -13991909 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 6 1407 27 0 0 0 chr11 107852029 107852056 -13991800 + AT_rich Low_complexity Low_complexity 1 27 0 6 1407 590 241 33 99 chr11 107852557 107852621 -13991235 + RMER30 DNA MER1_type 2 68 -134 6 1407 1464 118 18 0 chr11 107852621 107852841 -13991015 + URR1A DNA MER1_type 3 226 0 6 1407 590 241 33 99 chr11 107852841 107852875 -13990981 + RMER30 DNA MER1_type 69 99 -103 6 1407 420 20 0 0 chr11 107852875 107852924 -13990932 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1407 590 241 33 99 chr11 107852924 107853036 -13990820 + RMER30 DNA MER1_type 100 198 -4 6 1407 360 234 233 40 chr11 107853061 107853242 -13990614 + MLT1A LTR MaLR 5 219 -146 6 1407 358 162 24 59 chr11 107854201 107854286 -13989570 - ID4_ SINE ID 0 83 2 6 1407 1230 41 14 0 chr11 107855047 107855194 -13988662 + B1_Mur4 SINE Alu 2 150 0 6 1407 244 187 139 51 chr11 107855208 107855287 -13988569 - Lx8 LINE L1 -235 7238 7153 6 1407 180 0 0 0 chr11 107856700 107856720 -13987136 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1407 247 208 68 14 chr11 107857089 107857162 -13986694 + MIRm SINE MIR 110 186 -90 6 1407 246 32 0 0 chr11 107858118 107858149 -13985707 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 6 1407 665 232 63 24 chr11 107858402 107858633 -13985223 + ORR1E LTR MaLR 1 246 -124 6 1407 234 340 135 26 chr11 107858671 107858864 -13984992 - MIRb SINE MIR -50 218 5 6 1407 296 253 46 0 chr11 107859029 107859116 -13984740 + (CATG)n Simple_repeat Simple_repeat 1 91 0 6 1407 225 200 36 0 chr11 107859117 107859172 -13984684 - B3 SINE B2 -10 206 150 6 1407 254 224 39 13 chr11 107859208 107859285 -13984571 - B3 SINE B2 -11 205 127 6 1407 455 266 81 34 chr11 107860249 107860397 -13983459 - ID_B1 SINE B4 -16 208 54 6 1407 251 203 0 0 chr11 107860400 107860464 -13983392 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1407 263 85 0 21 chr11 107860749 107860797 -13983059 + (AGGGGG)n Simple_repeat Simple_repeat 1 47 0 7 1407 1211 164 23 27 chr11 107860933 107861153 -13982703 - URR1B DNA MER1_type -3 222 4 7 1407 197 207 56 79 chr11 107861817 107861906 -13981950 + MIR SINE MIR 17 103 -159 7 1407 473 275 34 74 chr11 107862055 107862204 -13981652 - B1_Mur1 SINE Alu -5 144 2 7 1407 578 293 39 28 chr11 107862242 107862421 -13981435 - B3A SINE B2 -14 184 4 7 1407 3416 46 2 0 chr11 107862629 107863024 -13980832 + MTA_Mm LTR MaLR 1 396 0 7 1407 287 266 88 0 chr11 107863734 107863847 -13980009 - Cheshire DNA MER1_type -2185 235 113 7 1407 532 81 23 0 chr11 107864173 107864260 -13979596 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1407 676 212 133 21 chr11 107864298 107864486 -13979370 - B4A SINE B4 -58 234 26 7 1407 352 240 57 16 chr11 107865873 107865996 -13977860 - L1M3c LINE L1 -5739 402 275 7 1407 277 302 113 97 chr11 107866074 107866312 -13977544 + B4A SINE B4 1 242 -50 7 1407 722 266 6 12 chr11 107866348 107866508 -13977348 - RSINE1 SINE B4 -4 161 3 7 1407 386 333 31 81 chr11 107866684 107866872 -13976984 - MER33 DNA MER1_type -79 245 63 7 1407 368 275 135 15 chr11 107866872 107867005 -13976851 - B1F SINE Alu 0 149 1 7 1407 386 333 31 81 chr11 107867005 107867074 -13976782 - MER33 DNA MER1_type -262 62 1 7 1407 546 263 133 33 chr11 107867839 107867908 -13975948 + ID_B1 SINE B4 26 224 0 7 1407 748 45 223 0 chr11 107867908 107868020 -13975836 + B1_Mur4 SINE Alu 14 150 0 7 1407 349 110 14 14 chr11 107868020 107868094 -13975762 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 7 1407 245 286 120 11 chr11 107868097 107868189 -13975667 - MIR SINE MIR -73 189 88 7 1407 661 316 43 0 chr11 107868190 107868377 -13975479 + B4A SINE B4 1 195 -97 7 1407 500 224 37 0 chr11 107868380 107868487 -13975369 + ID_B1 SINE B4 109 219 -5 7 1407 557 152 0 9 chr11 107868526 107868632 -13975224 + GA-rich Low_complexity Low_complexity 2 106 0 7 1407 604 319 115 0 chr11 107869512 107869694 -13974162 + MER58A DNA MER1_type 6 208 -16 7 1407 22 0 0 0 chr11 107870317 107870339 -13973517 + AT_rich Low_complexity Low_complexity 1 22 0 7 1407 355 245 91 73 chr11 107870419 107870529 -13973327 + PB1D10 SINE Alu 3 114 -3 7 1407 302 246 0 76 chr11 107870559 107870638 -13973218 + Charlie12 DNA MER1_type 2 74 -2799 7 1407 305 203 0 17 chr11 107870564 107870624 -13973232 - RMER30 DNA MER1_type -7 195 137 7 1407 804 188 28 40 chr11 107871917 107872094 -13971762 - B2_Mm2 SINE B2 -19 176 2 7 175 709 284 5 71 chr11 107872120 107872332 -13971524 - B3A SINE B2 0 198 1 7 1408 311 263 51 31 chr11 107872414 107872512 -13971344 + MER102a DNA MER1_type 44 143 -187 7 1408 345 47 0 0 chr11 107873010 107873053 -13970803 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1408 21 0 0 0 chr11 107874169 107874190 -13969666 + GC_rich Low_complexity Low_complexity 1 21 0 7 1408 307 246 0 0 chr11 107874645 107874710 -13969146 + MER58A DNA MER1_type 57 121 -103 7 1408 253 220 51 0 chr11 107874708 107874767 -13969089 + MER58A DNA MER1_type 151 206 -18 7 1408 202 229 57 16 chr11 107874880 107875004 -13968852 + (CTGTG)n Simple_repeat Simple_repeat 1 129 0 7 1408 251 329 58 64 chr11 107875022 107875178 -13968678 + L2c LINE L2 3054 3208 -179 7 1408 467 277 134 0 chr11 107875792 107875911 -13967945 + ID_B1 SINE B4 79 213 -11 7 1408 207 288 63 63 chr11 107876280 107876343 -13967513 + MER5B DNA MER1_type 5 67 -111 7 1408 758 122 0 0 chr11 107876395 107876502 -13967354 - B1_Mur4 SINE Alu -43 107 1 7 1408 286 397 0 8 chr11 107876551 107876683 -13967173 + MER5A1 DNA MER1_type 36 166 0 7 1408 899 146 42 0 chr11 107877730 107877874 -13965982 - B1_Mur4 SINE Alu 0 150 1 7 1408 631 311 70 6 chr11 107877901 107878215 -13965641 - Lx9 LINE L1 -215 7429 7096 7 1408 235 319 14 0 chr11 107878919 107878988 -13964868 + MER5B DNA MER1_type 102 171 -7 7 1408 314 352 147 4 chr11 107879130 107879395 -13964461 - MER113 DNA MER1_type -200 321 19 7 1408 733 221 20 52 chr11 107879697 107879850 -13964006 - B1_Mur1 SINE Alu -1 148 1 7 1408 513 280 25 127 chr11 107879850 107879947 -13963909 - ID SINE ID -152 72 1 7 1408 463 253 21 0 chr11 107879873 107879968 -13963888 + B4A SINE B4 2 98 -194 7 1408 1158 232 207 0 chr11 107880689 107881003 -13962853 + MTE2b LTR MaLR 1 379 0 7 1408 278 335 89 40 chr11 107881245 107881447 -13962409 + MIR SINE MIR 25 236 -26 7 1408 511 312 133 18 chr11 107881587 107881812 -13962044 + B4 SINE B4 40 290 -2 7 1408 228 225 42 14 chr11 107883065 107883137 -13960719 + GA-rich Low_complexity Low_complexity 2 75 0 7 1408 587 152 29 0 chr11 107883965 107884070 -13959786 + B4A SINE B4 125 232 -60 7 1408 372 43 0 0 chr11 107885089 107885135 -13958721 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1408 216 0 0 0 chr11 107885135 107885158 -13958698 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1408 802 208 0 86 chr11 107885166 107885340 -13958516 - B4 SINE B4 -28 264 106 7 1408 294 103 48 79 chr11 107885361 107885424 -13958432 - B4 SINE B4 -192 100 40 7 1408 876 45 9 0 chr11 107885476 107885587 -13958269 - B1_Mus1 SINE Alu -1 147 36 7 1408 1186 281 39 13 chr11 107885798 107886108 -13957748 + MLT1A0 LTR MaLR 3 320 -45 7 1408 451 267 8 25 chr11 107886583 107886702 -13957154 - PB1D10 SINE Alu 0 117 1 7 1408 439 175 0 37 chr11 107887976 107888083 -13955773 + CT-rich Low_complexity Low_complexity 3 105 0 7 1408 435 345 143 41 chr11 107888326 107888512 -13955344 - L1ME4a LINE L1 -7 6117 5912 7 1408 363 271 0 0 chr11 107888512 107888582 -13955274 - ID4_ SINE ID -11 72 3 7 1408 435 345 143 41 chr11 107888582 107888836 -13955020 - L1ME4a LINE L1 -213 5911 5632 7 1408 431 345 52 65 chr11 107889148 107889458 -13954398 - L1ME4a LINE L1 -972 5174 4865 7 1408 895 173 121 19 chr11 107889661 107889867 -13953989 - MTEb LTR MaLR 0 379 153 7 1408 754 235 11 144 chr11 107889867 107890131 -13953725 - B4A SINE B4 -55 237 9 7 1408 395 236 122 106 chr11 107891287 107891467 -13952389 - B2_Mm2 SINE B2 -6 189 7 7 1408 249 247 11 105 chr11 107891782 107891877 -13951979 - MLT1A0 LTR MaLR -256 109 24 7 1408 249 315 180 44 chr11 107891935 107892141 -13951715 + MamRep605 Unknown Unknown 264 497 -379 7 1408 233 351 16 76 chr11 107893034 107893219 -13950637 + MIRb SINE MIR 95 268 0 7 1408 633 210 660 8 chr11 107895105 107895199 -13948657 - B4A SINE B4 -22 270 118 7 1408 423 0 0 0 chr11 107895199 107895246 -13948610 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1408 633 239 0 27 chr11 107895246 107895361 -13948495 - B4A SINE B4 -175 117 3 7 1408 1065 302 96 32 chr11 107896847 107897574 -13946282 - L1MA4 LINE L1 -339 5961 5127 7 1408 418 259 193 11 chr11 107897716 107897892 -13945964 + MTEa LTR MaLR 168 375 -4 7 1408 1245 221 25 42 chr11 107898511 107898795 -13945061 + B4 SINE B4 3 281 -11 7 1408 24 32 0 0 chr11 107900335 107900366 -13943490 + AT_rich Low_complexity Low_complexity 1 31 0 7 1408 723 24 0 0 chr11 107900823 107900908 -13942948 + (CCA)n Simple_repeat Simple_repeat 2 86 0 7 1408 213 304 38 0 chr11 107901935 107902014 -13941842 + MIR SINE MIR 76 157 -105 7 1408 224 213 16 0 chr11 107902015 107902076 -13941780 + (TGG)n Simple_repeat Simple_repeat 1 62 0 7 1408 204 288 0 0 chr11 107903510 107903583 -13940273 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1408 378 291 158 29 chr11 107903652 107903893 -13939963 - L1MC4 LINE L1 -231 7811 7540 7 1408 528 255 14 41 chr11 107904050 107904197 -13939659 + MLT1A0 LTR MaLR 6 148 -217 7 1408 517 264 78 7 chr11 107904209 107904350 -13939506 + MLT1A0 LTR MaLR 225 375 -15 7 1408 186 167 0 0 chr11 107904812 107904848 -13939008 + (CAA)n Simple_repeat Simple_repeat 3 38 0 7 1408 353 230 182 79 chr11 107904850 107905015 -13938841 + L1MC4 LINE L1 6821 7002 -1040 7 1408 207 0 0 0 chr11 107905997 107906020 -13937836 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1408 1360 246 36 26 chr11 107906071 107906557 -13937299 + RMER15 LTR ERVL 27 575 0 7 1408 399 312 14 34 chr11 107906725 107906871 -13936985 + Lx8 LINE L1 7034 7176 -297 7 1408 461 275 167 37 chr11 107907032 107907247 -13936609 + RMER15 LTR ERVL 333 575 0 7 1408 19535 66 16 1 chr11 107907428 107909954 -13933902 + L1Md_F2 LINE L1 3023 5585 -298 7 1408 7552 81 3 11 chr11 107909955 107910936 -13932920 + L1Md_F2 LINE L1 5587 6559 -23 7 1408 180 0 0 0 chr11 107910936 107910956 -13932900 + (TAA)n Simple_repeat Simple_repeat 1 20 0 7 1408 7552 81 3 11 chr11 107910956 107910978 -13932878 + L1Md_F2 LINE L1 6560 6581 -1 7 1408 267 355 60 60 chr11 107912066 107912300 -13931556 + MIRb SINE MIR 27 260 -8 7 1408 484 233 35 0 chr11 107912470 107912586 -13931270 + PB1D9 SINE Alu 1 120 0 7 1408 307 297 0 52 chr11 107912592 107912680 -13931176 + ID4 SINE ID 10 93 -59 7 1408 237 358 0 0 chr11 107912936 107913017 -13930839 + MIR SINE MIR 93 173 -89 7 1408 1308 266 132 24 chr11 107913054 107913517 -13930339 + Lx8 LINE L1 6122 6634 -839 7 1408 494 152 0 11 chr11 107913527 107913620 -13930236 + CT-rich Low_complexity Low_complexity 3 94 0 7 1408 776 297 24 12 chr11 107913648 107913897 -13929959 + Lx7 LINE L1 6629 6880 -816 7 1408 297 169 0 0 chr11 107914079 107914138 -13929718 + GA-rich Low_complexity Low_complexity 2 60 0 7 1408 304 204 19 0 chr11 107914475 107914529 -13929327 + BC1_Mm scRNA scRNA 2 56 -96 7 1408 234 0 0 0 chr11 107916306 107916332 -13927524 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1408 201 147 0 0 chr11 107916991 107917025 -13926831 + (CAA)n Simple_repeat Simple_repeat 2 35 0 7 1408 356 210 12 47 chr11 107917503 107917588 -13926268 + MLT1A1 LTR MaLR 325 406 -2 7 1408 479 294 0 44 chr11 107917899 107918059 -13925797 - RSINE1 SINE B4 -12 153 1 7 1408 207 114 0 0 chr11 107919325 107919360 -13924496 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1408 189 0 0 0 chr11 107919912 107919933 -13923923 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1408 315 0 0 0 chr11 107919933 107919967 -13923889 + (TA)n Simple_repeat Simple_repeat 2 36 0 8 1408 261 380 94 6 chr11 107919978 107920137 -13923719 + MIR SINE MIR 56 228 -34 8 1408 263 140 20 0 chr11 107920230 107920280 -13923576 + CT-rich Low_complexity Low_complexity 3 53 0 8 1408 388 267 0 91 chr11 107920331 107920430 -13923426 - PB1D10 SINE Alu -26 91 2 8 1408 228 359 0 0 chr11 107921228 107921292 -13922564 + Cheshire DNA MER1_type 169 232 -2188 8 1408 289 215 49 37 chr11 107921304 107921386 -13922470 + MER58C DNA MER1_type 130 212 -3 8 1408 204 148 49 0 chr11 107921497 107921558 -13922298 + CT-rich Low_complexity Low_complexity 1 64 0 8 1408 336 296 92 0 chr11 107921562 107921660 -13922196 - PB1D10 SINE Alu -6 111 5 8 1408 479 312 14 0 chr11 107921852 107921996 -13921860 - RSINE1 SINE B4 -17 148 3 8 1408 573 15 0 0 chr11 107922556 107922622 -13921234 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1408 23 0 0 0 chr11 107922683 107922706 -13921150 + AT_rich Low_complexity Low_complexity 1 23 0 8 1408 455 224 17 0 chr11 107923524 107923640 -13920216 - L1MC4a LINE L1 -8 7874 7757 8 1408 375 23 0 0 chr11 107924337 107924381 -13919475 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1408 1359 67 0 0 chr11 107925178 107925357 -13918499 + (TCC)n Simple_repeat Simple_repeat 2 180 0 8 1408 285 28 0 0 chr11 107925357 107925388 -13918468 + (TTC)n Simple_repeat Simple_repeat 2 32 0 8 1408 342 0 0 0 chr11 107925695 107925733 -13918123 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1408 774 166 0 0 chr11 107926119 107926270 -13917586 + GA-rich Low_complexity Low_complexity 2 152 0 8 1408 519 238 198 11 chr11 107926443 107926630 -13917226 + ID_B1 SINE B4 3 224 0 8 1408 935 218 42 47 chr11 107926828 107927040 -13916816 - B3 SINE B2 -5 211 1 8 1408 630 281 11 16 chr11 107927761 107927949 -13915907 + B3A SINE B2 1 187 -11 8 1408 333 318 54 9 chr11 107928253 107928364 -13915492 - MLT1I LTR MaLR -1 410 295 8 1408 752 96 9 0 chr11 107929206 107929321 -13914535 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 8 1408 1303 153 4 48 chr11 107929321 107929735 -13914121 - RMER6B LTR ERVK -5 456 1 8 1408 1123 158 89 5 chr11 107929852 107930055 -13913801 - URR1A DNA MER1_type -4 222 3 8 1408 624 62 0 0 chr11 107931702 107931783 -13912073 + (TCCCC)n Simple_repeat Simple_repeat 4 84 0 8 1408 631 11 68 0 chr11 107931818 107931906 -13911950 + (TTTTC)n Simple_repeat Simple_repeat 1 94 0 8 1408 306 0 0 0 chr11 107931909 107931943 -13911913 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 8 1408 219 211 0 0 chr11 107931948 107931986 -13911870 - ID4_ SINE ID -33 50 13 8 1408 421 327 0 0 chr11 107932087 107932191 -13911665 - B1F1 SINE Alu -28 121 18 8 1408 279 260 44 80 chr11 107932204 107932317 -13911539 - B1F1 SINE Alu -2 147 39 8 1408 348 226 15 161 chr11 107932477 107932614 -13911242 + MT2B LTR ERVL 149 265 -336 8 1408 661 203 8 8 chr11 107932498 107932622 -13911234 + B1_Mur3 SINE Alu 1 124 -25 8 1408 203 333 102 20 chr11 107933617 107933764 -13910092 - MIRb SINE MIR -52 216 58 8 1408 635 338 47 43 chr11 107933790 107934025 -13909831 - B4A SINE B4 0 292 57 8 1408 308 246 0 14 chr11 107934803 107934873 -13908983 + MER3 DNA MER1_type 38 106 -103 8 1408 2801 254 65 56 chr11 107934882 107935741 -13908115 + Lx8 LINE L1 6410 7276 -197 8 1408 1048 222 4 31 chr11 107935744 107935972 -13907884 - URR1B DNA MER1_type -1 224 3 8 1408 473 225 145 43 chr11 107935973 107936159 -13907697 + Lx8 LINE L1 7268 7472 -1 8 1408 1382 226 61 159 chr11 107936469 107936979 -13906877 + MT2A LTR ERVL 1 460 -73 8 1408 378 0 0 0 chr11 107936979 107937021 -13906835 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1408 300 53 0 0 chr11 107937021 107937059 -13906797 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 8 1408 285 75 0 0 chr11 107937901 107937941 -13905915 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1408 696 294 106 8 chr11 107937946 107938210 -13905646 - B4A SINE B4 -1 291 2 8 1408 22 0 0 0 chr11 107938448 107938470 -13905386 + AT_rich Low_complexity Low_complexity 1 22 0 8 1408 3062 79 7 25 chr11 107938470 107938909 -13904947 - L1_Mus3 LINE L1 0 6638 6208 8 1408 230 304 0 0 chr11 107939091 107939147 -13904709 + CT-rich Low_complexity Low_complexity 5 60 0 8 1408 518 254 7 34 chr11 107939160 107939307 -13904549 - B1F SINE Alu -6 143 1 8 1408 618 282 150 12 chr11 107940144 107940383 -13903473 + B4A SINE B4 1 272 -20 8 1408 362 151 14 0 chr11 107940408 107940481 -13903375 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1408 291 145 0 0 chr11 107940497 107940566 -13903290 + (TC)n Simple_repeat Simple_repeat 2 70 0 8 1408 295 23 45 0 chr11 107940566 107940610 -13903246 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1408 244 359 88 42 chr11 107940656 107940848 -13903008 + MLT1J LTR MaLR 3 203 -309 8 1408 183 129 0 0 chr11 107942052 107942083 -13901773 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 8 1408 792 221 0 0 chr11 107942226 107942556 -13901300 + (TAGA)n Simple_repeat Simple_repeat 1 330 0 8 1408 731 198 8 0 chr11 107942909 107943035 -13900821 - B1_Mus2 SINE Alu 0 147 21 8 1408 274 191 171 131 chr11 107942952 107943127 -13900729 - RLTR25B LTR ERVK -519 509 328 8 1408 183 42 0 0 chr11 107943152 107943176 -13900680 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 8 1408 1080 268 158 19 chr11 107943312 107943730 -13900126 + RMER5 LTR ERV1 43 518 -16 8 1408 744 276 99 91 chr11 107944671 107945324 -13898532 - MT2A LTR ERVL 0 533 1 8 1408 2166 132 3 33 chr11 107946042 107946139 -13897717 + ORR1A2 LTR MaLR 1 95 -232 8 1408 2755 90 8 0 chr11 107946139 107946505 -13897351 - L1_Mus1 LINE L1 0 6567 6199 8 1408 2166 132 3 33 chr11 107946505 107946744 -13897112 + ORR1A2 LTR MaLR 96 327 0 8 1408 989 266 87 4 chr11 107947060 107947324 -13896532 + B4A SINE B4 7 292 0 8 1408 245 250 88 157 chr11 107947884 107948031 -13895825 + LTR73 LTR ERV1 136 272 -300 8 1408 384 159 250 21 chr11 107948047 107948143 -13895713 + B1_Mus2 SINE Alu 29 146 -1 8 1408 414 94 0 0 chr11 107948167 107948220 -13895636 - ORR1A2 LTR MaLR 0 326 274 8 1408 4517 54 19 35 chr11 107948235 107948827 -13895029 - L1_Mus2 LINE L1 0 6566 5985 8 1408 1281 13 20 0 chr11 107948827 107948977 -13894879 + L1_Mus2 LINE L1 5853 6005 -561 8 1408 2045 115 0 0 chr11 107948977 107949265 -13894591 - ORR1A2 LTR MaLR -39 288 1 8 1408 248 277 79 97 chr11 107949274 107949502 -13894354 + LTR73 LTR ERV1 314 537 -35 8 1408 264 260 62 10 chr11 107949675 107949772 -13894084 + MLT1J LTR MaLR 305 406 -106 8 1408 5248 127 12 30 chr11 107949949 107950792 -13893064 + Lx2B LINE L1 6172 6999 -1 8 1408 522 70 0 0 chr11 107950910 107950981 -13892875 + (CAGG)n Simple_repeat Simple_repeat 4 74 0 8 1408 357 156 22 22 chr11 107951717 107951809 -13892047 + GA-rich Low_complexity Low_complexity 4 95 0 8 1408 414 323 92 77 chr11 107951836 107952108 -13891748 + MLT1C LTR MaLR 190 465 -2 8 1408 388 264 35 4 chr11 107953200 107953369 -13890487 + L1M3 LINE L1 5299 5474 -688 8 1408 467 284 36 61 chr11 107953380 107953545 -13890311 + MER21B LTR ERV1 623 783 -80 8 1408 903 145 0 0 chr11 107954002 107954174 -13889682 + (TCCA)n Simple_repeat Simple_repeat 3 174 0 8 1408 1086 270 36 14 chr11 107955495 107955701 -13888155 + B4A SINE B4 1 216 -76 8 1408 1188 53 18 0 chr11 107955701 107955927 -13887929 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 8 1408 1086 270 36 14 chr11 107955927 107955997 -13887859 + B4A SINE B4 217 283 -9 8 1408 573 164 0 0 chr11 107956012 107956152 -13887704 + (CA)n Simple_repeat Simple_repeat 2 141 0 8 1408 1011 209 18 28 chr11 107956425 107956642 -13887214 + B3 SINE B2 2 216 0 8 1408 375 371 90 42 chr11 107957129 107957464 -13886392 - L1M5 LINE L1 -476 5648 5298 8 1408 932 157 7 0 chr11 107957646 107957793 -13886063 - B1_Mus1 SINE Alu 0 148 1 8 1408 656 196 5 0 chr11 107957971 107958171 -13885685 + (TG)n Simple_repeat Simple_repeat 1 201 0 8 1408 1103 79 0 0 chr11 107958457 107958596 -13885260 + B1_Mus2 SINE Alu 1 139 -8 8 1408 252 0 0 0 chr11 107958596 107958624 -13885232 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1408 533 313 113 55 chr11 107959037 107959294 -13884562 - B4 SINE B4 -20 272 1 8 1408 565 340 119 8 chr11 107959814 107960291 -13883565 - L1MB8 LINE L1 -3 6175 5646 8 1408 605 304 7 12 chr11 107960291 107960471 -13883385 + ORR1E LTR MaLR 3 177 -207 8 1408 986 97 0 37 chr11 107961071 107961144 -13882712 - L1_Mur2 LINE L1 -2332 3545 3478 8 1408 288 0 0 0 chr11 107961144 107961176 -13882680 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 1408 986 97 0 37 chr11 107961176 107961263 -13882593 - L1_Mur2 LINE L1 -2400 3477 3391 8 1408 1625 120 81 0 chr11 107961274 107961450 -13882406 - L1_Mur2 LINE L1 -4089 1788 1607 8 1408 387 0 0 0 chr11 107961450 107961493 -13882363 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1408 1625 120 81 0 chr11 107961493 107961624 -13882232 - L1_Mur2 LINE L1 -4271 1606 1458 8 1408 219 36 0 0 chr11 107962202 107962230 -13881626 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 8 1408 779 156 16 0 chr11 107962295 107962417 -13881439 - B1_Mur1 SINE Alu -15 134 11 8 1408 598 341 51 80 chr11 107962586 107962975 -13880881 + MLT1B LTR MaLR 9 386 -4 8 1408 222 37 0 0 chr11 107963334 107963361 -13880495 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1408 672 222 27 14 chr11 107963866 107964012 -13879844 + B1F SINE Alu 1 148 -1 8 1408 270 331 81 20 chr11 107965386 107965534 -13878322 - MIRc SINE MIR -31 237 81 8 1408 306 0 0 0 chr11 107965578 107965612 -13878244 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1408 1520 221 79 43 chr11 107965825 107966218 -13877638 - MTD LTR MaLR -12 407 1 8 1408 36204 48 0 3 chr11 107967156 107972799 -13871057 + L1Md_T LINE L1 1 5589 -297 8 1408 8115 44 13 2 chr11 107972799 107973828 -13870028 + L1Md_T LINE L1 5590 6585 0 8 1408 240 160 0 123 chr11 107974165 107974222 -13869634 - MT2A LTR ERVL 0 584 535 8 1408 357 24 0 0 chr11 107974225 107974267 -13869589 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1408 387 0 0 0 chr11 107974269 107974312 -13869544 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1408 890 194 65 141 chr11 107974313 107974701 -13869155 - MT2A LTR ERVL -121 480 1 8 1408 333 0 0 0 chr11 107975417 107975454 -13868402 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1408 393 22 0 0 chr11 107975835 107975881 -13867975 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1408 239 301 166 52 chr11 107976613 107976806 -13867050 + MLT1D LTR MaLR 71 285 -220 9 1408 1397 87 5 0 chr11 107977129 107977313 -13866543 - B2_Mm1t SINE B2 -8 185 1 9 1408 1344 65 0 17 chr11 107977948 107978121 -13865735 + L1Md_F2 LINE L1 6236 6405 -177 9 1408 1170 175 43 5 chr11 107978176 107978383 -13865473 - B3 SINE B2 0 216 2 9 1408 214 290 64 11 chr11 107978838 107978932 -13864924 - MIRm SINE MIR -117 159 61 9 1408 595 304 72 14 chr11 107979006 107979229 -13864627 + MER58B DNA MER1_type 72 307 -34 9 1408 258 261 123 0 chr11 107979571 107979636 -13864220 + ID4_ SINE ID 1 73 -10 9 1408 663 313 68 64 chr11 107979775 107980055 -13863801 - B4 SINE B4 -11 281 1 9 1408 2073 90 14 103 chr11 107983061 107983420 -13860436 - ORR1A2 LTR MaLR 0 327 1 9 1408 214 371 65 43 chr11 107983448 107983634 -13860222 - MIR SINE MIR -2 260 71 9 1408 289 243 24 108 chr11 107983700 107983783 -13860073 + ORR1E LTR MaLR 22 97 -282 9 1408 421 291 69 61 chr11 107983874 107984119 -13859737 + ORR1E LTR MaLR 113 359 0 9 1408 536 152 10 0 chr11 107985306 107985405 -13858451 + GA-rich Low_complexity Low_complexity 1 100 0 9 1408 247 339 22 59 chr11 107985858 107985993 -13857863 + Charlie15a DNA MER1_type 91 220 -4 9 1408 1004 151 6 0 chr11 107986464 107986643 -13857213 + GA-rich Low_complexity Low_complexity 1 180 0 9 1408 190 260 217 57 chr11 107986802 107986908 -13856948 - MIR SINE MIR -118 144 22 9 1408 242 271 214 19 chr11 107987660 107987814 -13856042 - L1M5 LINE L1 -454 5719 5536 9 1408 785 244 11 44 chr11 107987972 107988086 -13855770 - B3A SINE B2 -23 175 68 9 1408 2508 75 16 0 chr11 107988086 107988407 -13855449 - ORR1A2 LTR MaLR -1 326 1 9 1408 785 244 11 44 chr11 107988407 107988472 -13855384 - B3A SINE B2 -131 67 2 9 1408 350 329 113 16 chr11 107988499 107988817 -13855039 - L1M5 LINE L1 -853 5293 4945 9 1408 1105 235 17 59 chr11 107990732 107991021 -13852835 + B4A SINE B4 4 280 -12 9 1408 258 32 0 0 chr11 107991024 107991055 -13852801 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 9 1408 182 212 0 0 chr11 107992246 107992279 -13851577 - L3 LINE CR1 -4430 59 27 9 1408 243 307 59 10 chr11 107992368 107992470 -13851386 - MIR SINE MIR -85 177 71 9 1408 465 308 21 96 chr11 107992710 107992990 -13850866 - Charlie5 DNA MER1_type -1 2623 2365 9 1408 448 176 0 23 chr11 107993072 107993159 -13850697 - B1_Mur1 SINE Alu -1 148 64 9 1408 360 0 0 0 chr11 107993160 107993200 -13850656 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1408 519 17 0 0 chr11 107993200 107993259 -13850597 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 1408 641 207 13 91 chr11 107993277 107993431 -13850425 - B3A SINE B2 -55 143 2 9 1408 409 286 146 46 chr11 107993485 107993966 -13849890 + L1MC2 LINE L1 5795 6332 -1 9 1408 883 225 0 24 chr11 107994063 107994227 -13849629 + B3A SINE B2 1 160 -38 9 1408 402 21 0 0 chr11 107994232 107994279 -13849577 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1408 744 259 131 16 chr11 107994966 107995287 -13848569 - L1MB3 LINE L1 -1 6182 5825 9 1408 339 310 10 20 chr11 107995350 107995452 -13848404 - B4A SINE B4 -6 286 186 9 1408 300 277 106 9 chr11 107995581 107995694 -13848162 - L1MB3 LINE L1 -344 5839 5716 9 1408 256 231 283 11 chr11 107995962 107996054 -13847802 + PB1D10 SINE Alu 1 117 0 9 1408 1015 113 10 7 chr11 107996074 107996376 -13847480 + (CA)n Simple_repeat Simple_repeat 1 303 0 9 1408 352 273 39 101 chr11 107997098 107997264 -13846592 - MIRb SINE MIR -38 230 67 9 1408 624 129 0 0 chr11 107997566 107997667 -13846189 + (GGGA)n Simple_repeat Simple_repeat 4 104 0 9 1408 225 0 0 0 chr11 107998271 107998296 -13845560 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9 1408 954 217 50 36 chr11 107999174 107999394 -13844462 + ID_B1 SINE B4 2 224 0 9 1408 207 88 0 0 chr11 108000673 108000707 -13843149 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1408 278 64 64 0 chr11 108000726 108000773 -13843083 + (CACCC)n Simple_repeat Simple_repeat 2 51 0 2 1408 363 23 0 0 chr11 108000860 108000904 -13842952 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 3 1408 361 259 134 0 chr11 108000909 108001021 -13842835 - B1F SINE Alu -22 127 1 4 1408 252 0 0 0 chr11 108001793 108001821 -13842035 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1408 240 161 0 0 chr11 108002006 108002068 -13841788 + GA-rich Low_complexity Low_complexity 1 62 0 6 1408 198 71 0 0 chr11 108002070 108002098 -13841758 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1408 360 0 0 0 chr11 108002905 108002945 -13840911 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1409 280 317 20 40 chr11 108003474 108003622 -13840234 - MLT1D LTR MaLR -35 470 326 9 1409 231 236 0 0 chr11 108005377 108005449 -13838407 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1409 464 307 129 35 chr11 108005512 108005641 -13838215 + MLT1C LTR MaLR 65 203 -264 1 1409 369 0 0 0 chr11 108005641 108005682 -13838174 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1409 464 307 129 35 chr11 108005682 108005839 -13838017 + MLT1C LTR MaLR 204 377 -90 1 1409 409 283 73 57 chr11 108005897 108006231 -13837625 + L1MEc LINE L1 2152 2493 -3826 1 1409 194 274 202 0 chr11 108006855 108006939 -13836917 + MIR SINE MIR 79 179 -83 1 1409 825 202 23 36 chr11 108008123 108008344 -13835512 + ID_B1 SINE B4 7 224 0 1 1409 1200 27 0 46 chr11 108008699 108008852 -13835004 - B1_Mm SINE Alu -1 146 1 1 1409 423 56 0 0 chr11 108009186 108009240 -13834616 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1409 1133 95 0 6 chr11 108011073 108011243 -13832613 + (GAA)n Simple_repeat Simple_repeat 2 170 0 1 1409 271 89 0 35 chr11 108012471 108012529 -13831327 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 1 1409 327 25 0 0 chr11 108013621 108013661 -13830195 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 2 1409 387 0 0 0 chr11 108013663 108013706 -13830150 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1409 299 308 66 0 chr11 108014107 108014197 -13829659 + B4 SINE B4 1 96 -196 2 1409 371 299 148 23 chr11 108014197 108014454 -13829402 + B4A SINE B4 2 290 -2 2 1409 471 233 0 4 chr11 108014465 108014721 -13829135 + (CA)n Simple_repeat Simple_repeat 1 254 0 2 1409 599 252 51 6 chr11 108014766 108014922 -13828934 + B4A SINE B4 116 278 -14 2 1409 27 0 0 0 chr11 108016346 108016373 -13827483 + AT_rich Low_complexity Low_complexity 1 27 0 2 1409 818 222 19 67 chr11 108016683 108016891 -13826965 + B3A SINE B2 1 198 0 2 1409 259 341 120 8 chr11 108018648 108018781 -13825075 - RSINE1 SINE B4 -13 152 5 2 1409 869 272 42 49 chr11 108018827 108019113 -13824743 - B4 SINE B4 0 292 9 2 1409 561 272 18 30 chr11 108019300 108019467 -13824389 + ID_B1 SINE B4 60 224 0 2 1409 248 0 0 30 chr11 108020470 108020503 -13823353 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 3 1409 191 202 30 10 chr11 108020953 108021053 -13822803 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1409 773 280 128 52 chr11 108021060 108021403 -13822453 + MTEa LTR MaLR 10 378 -1 3 1409 243 0 0 0 chr11 108021944 108021971 -13821885 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1409 1161 81 0 0 chr11 108022313 108022461 -13821395 - B1_Mus1 SINE Alu 0 148 1 3 1409 473 288 75 25 chr11 108022499 108022738 -13821118 - MLT1D LTR MaLR -176 329 79 3 1409 1145 180 14 0 chr11 108022767 108022984 -13820872 + URR1B DNA MER1_type 1 220 -5 3 1409 256 133 33 0 chr11 108023360 108023420 -13820436 + (CATA)n Simple_repeat Simple_repeat 2 63 0 3 1409 459 0 0 0 chr11 108024791 108024842 -13819014 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1409 333 0 0 0 chr11 108024842 108024878 -13818978 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1409 587 306 44 88 chr11 108024962 108025188 -13818668 + ID_B1 SINE B4 9 224 0 4 1409 198 0 0 0 chr11 108025519 108025541 -13818315 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1409 334 346 0 9 chr11 108025768 108025873 -13817983 + RSINE1 SINE B4 44 147 -18 4 1409 258 160 0 0 chr11 108025894 108025944 -13817912 + (ATG)n Simple_repeat Simple_repeat 2 51 0 4 1409 239 349 111 35 chr11 108026438 108026753 -13817103 - MLT1H LTR MaLR -198 351 13 4 1409 182 279 0 0 chr11 108027169 108027212 -13816644 - MIR SINE MIR -104 104 62 4 1409 198 254 31 16 chr11 108027794 108027858 -13815998 - MIRc SINE MIR -129 139 75 4 1409 207 162 0 0 chr11 108028370 108028407 -13815449 + CT-rich Low_complexity Low_complexity 1 37 0 4 1409 1128 114 0 0 chr11 108028411 108028587 -13815269 + (TTC)n Simple_repeat Simple_repeat 1 176 0 4 1409 581 234 0 42 chr11 108028588 108028731 -13815125 - B1_Mur2 SINE Alu -11 138 2 4 1409 1017 47 0 0 chr11 108029010 108029137 -13814719 + (GA)n Simple_repeat Simple_repeat 2 128 0 5 1409 671 245 60 18 chr11 108029296 108029462 -13814394 + ID_B1 SINE B4 1 173 -51 5 1409 263 219 96 0 chr11 108029814 108029887 -13813969 + B4 SINE B4 197 276 -16 5 1409 861 213 79 99 chr11 108030346 108030429 -13813427 - MT2B LTR ERVL -2 599 494 5 1409 3125 154 151 13 chr11 108030429 108030976 -13812880 - RMER6D LTR ERVK 0 720 88 5 1409 255 103 0 0 chr11 108030976 108031015 -13812841 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1409 3125 154 151 13 chr11 108031015 108031097 -13812759 - RMER6D LTR ERVK -633 87 4 5 1409 288 0 0 0 chr11 108031097 108031129 -13812727 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1409 861 203 139 203 chr11 108031129 108031568 -13812288 - MT2B LTR ERVL -108 493 3 5 1409 270 230 12 75 chr11 108032335 108032403 -13811453 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 5 1409 258 125 0 0 chr11 108032403 108032451 -13811405 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1409 270 230 12 75 chr11 108032451 108032462 -13811394 + tRNA-Ala-GCY_ tRNA tRNA 65 75 0 5 1409 245 261 0 0 chr11 108032595 108032660 -13811196 - MER5A1 DNA MER1_type -81 85 21 5 1409 1095 85 23 6 chr11 108033744 108033854 -13810002 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 6 1409 1021 109 23 0 chr11 108033854 108034028 -13809828 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 1409 1095 85 23 6 chr11 108034028 108034094 -13809762 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 6 1409 711 0 0 0 chr11 108036660 108036739 -13807117 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 1409 402 134 0 0 chr11 108037104 108037171 -13806685 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1409 230 273 36 72 chr11 108037173 108037256 -13806600 - L2a LINE L2 -8 3418 3300 6 1409 194 232 54 0 chr11 108037560 108037616 -13806240 - L2a LINE L2 -585 2834 2776 6 1409 474 101 0 0 chr11 108039195 108039264 -13804592 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1409 857 266 168 53 chr11 108039759 108039890 -13803966 + MLT2B4 LTR ERVL 5 143 -413 6 1409 777 251 136 114 chr11 108039890 108040259 -13803597 + MTE2a LTR MaLR 1 377 -2 6 1409 857 266 168 53 chr11 108040259 108040616 -13803240 + MLT2B4 LTR ERVL 144 549 -7 6 1409 332 244 165 31 chr11 108040945 108041072 -13802784 - RSINE1 SINE B4 -19 146 3 6 1409 227 352 11 11 chr11 108042584 108042676 -13801180 + L2c LINE L2 3276 3367 -20 7 1409 225 196 0 0 chr11 108042708 108042754 -13801102 + A-rich Low_complexity Low_complexity 1 46 0 7 1409 314 297 59 8 chr11 108043371 108043490 -13800366 - B1F2 SINE Alu -2 147 23 7 1409 202 48 22 67 chr11 108044524 108044569 -13799287 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1409 183 80 0 0 chr11 108044901 108044926 -13798930 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1409 477 171 0 0 chr11 108045726 108045814 -13798042 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 1409 489 138 0 0 chr11 108045816 108045896 -13797960 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 1409 254 218 54 54 chr11 108047398 108047490 -13796366 + MIR3 SINE MIR 105 196 -12 7 1409 656 247 30 85 chr11 108047518 108047648 -13796208 + B4A SINE B4 2 127 -165 7 1409 3380 118 75 36 chr11 108047648 108048209 -13795647 - RMER4B LTR ERVK 0 585 3 7 1409 656 247 30 85 chr11 108048209 108048277 -13795579 + B4A SINE B4 128 189 -103 7 1409 216 296 58 36 chr11 108049031 108049168 -13794688 + L2 LINE L2 2148 2287 -1132 8 1409 420 20 0 0 chr11 108049823 108049872 -13793984 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1409 1533 299 129 58 chr11 108050818 108051801 -13792055 + Lx8 LINE L1 5845 6897 -576 8 1409 642 259 119 0 chr11 108051864 108052057 -13791799 + Lx8 LINE L1 7018 7233 -240 8 1409 373 283 10 0 chr11 108052057 108052156 -13791700 + RMER15 LTR ERVL 371 470 -105 8 1409 231 286 0 0 chr11 108053822 108053878 -13789978 + (CATA)n Simple_repeat Simple_repeat 4 59 0 8 1409 692 233 50 12 chr11 108053962 108054123 -13789733 + B3 SINE B2 48 214 -2 8 1409 563 259 0 53 chr11 108054695 108054866 -13788990 + RSINE1 SINE B4 4 165 0 8 1409 252 284 183 42 chr11 108054943 108055134 -13788722 + MLT1A1 LTR MaLR 191 408 0 8 1409 223 279 130 37 chr11 108055838 108055946 -13787910 - MIRb SINE MIR -125 143 26 8 1409 690 275 19 48 chr11 108057000 108057210 -13786646 + ID_B1 SINE B4 18 221 -3 8 1409 304 203 0 25 chr11 108057879 108058036 -13785820 + CT-rich Low_complexity Low_complexity 2 154 0 9 1409 388 167 0 29 chr11 108058050 108058186 -13785670 + CT-rich Low_complexity Low_complexity 1 132 0 9 1409 366 23 0 0 chr11 108058186 108058229 -13785627 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1409 331 324 107 46 chr11 108058324 108058521 -13785335 - ID_B1 SINE B4 -8 216 8 9 1409 979 142 0 11 chr11 108059479 108059657 -13784199 + GA-rich Low_complexity Low_complexity 4 179 0 9 1409 642 246 37 21 chr11 108059702 108059889 -13783967 + L1MB4 LINE L1 5485 5674 -506 9 1409 369 0 0 0 chr11 108060076 108060117 -13783739 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1409 399 262 29 10 chr11 108060206 108060310 -13783546 + B4A SINE B4 115 220 -72 9 1409 25 65 0 0 chr11 108060310 108060356 -13783500 + AT_rich Low_complexity Low_complexity 1 46 0 9 1409 372 220 5 38 chr11 108060412 108060596 -13783260 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 1409 419 274 56 89 chr11 108060596 108060776 -13783080 + L1MB4 LINE L1 5973 6146 -34 9 1409 279 0 0 0 chr11 108061629 108061660 -13782196 + (TATG)n Simple_repeat Simple_repeat 2 32 0 9 1409 421 156 101 25 chr11 108061662 108061741 -13782115 - B3 SINE B2 -130 86 2 1 1409 303 303 127 15 chr11 108061789 108061923 -13781933 - B1F SINE Alu 0 149 1 1 1409 341 287 56 0 chr11 108063208 108063316 -13780540 + PB1 SINE Alu 11 124 -3 1 1409 282 180 0 0 chr11 108063396 108063457 -13780399 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1409 441 0 0 0 chr11 108063457 108063506 -13780350 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1409 313 309 109 50 chr11 108063678 108063879 -13779977 + L1MC5 LINE L1 7742 7954 -7 1 1409 1229 289 90 19 chr11 108063917 108064294 -13779562 + MLT1C LTR MaLR 61 464 -3 1 1409 517 231 97 7 chr11 108065145 108065289 -13778567 - RSINE1 SINE B4 -6 159 3 1 1409 273 128 0 0 chr11 108065976 108066023 -13777833 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 1 1409 935 201 65 5 chr11 108066882 108067067 -13776789 - B3 SINE B2 -15 201 6 1 1409 225 283 67 0 chr11 108067313 108067373 -13776483 + Tigger14a DNA MER2_type 86 149 -175 1 1409 475 230 16 62 chr11 108070233 108070365 -13773491 - B1F SINE Alu -11 137 12 1 1409 372 88 0 0 chr11 108070408 108070465 -13773391 + (G)n Simple_repeat Simple_repeat 1 57 0 1 1409 483 184 81 0 chr11 108070920 108071007 -13772849 + B1_Mur1 SINE Alu 15 108 -41 1 1409 536 269 180 6 chr11 108072031 108072192 -13771664 + B4A SINE B4 24 212 -80 1 1409 761 313 146 6 chr11 108072427 108072755 -13771101 + MTE2b LTR MaLR 1 374 -5 1 1409 904 239 30 10 chr11 108074026 108074229 -13769627 - B3 SINE B2 0 216 10 1 1409 252 296 25 12 chr11 108075694 108075798 -13768058 - ID4 SINE ID -45 107 3 1 1409 443 299 234 0 chr11 108077230 108077443 -13766413 + B4A SINE B4 17 279 -13 1 1409 238 206 48 0 chr11 108077944 108078007 -13765849 + L1MA6 LINE L1 6217 6282 -18 1 1409 691 283 20 0 chr11 108078036 108078188 -13765668 + RSINE1 SINE B4 2 156 -9 1 1409 447 19 0 0 chr11 108078972 108079024 -13764832 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1409 608 230 28 41 chr11 108079024 108079164 -13764692 - B1F1 SINE Alu -1 148 11 1 1409 477 256 70 140 chr11 108079060 108079167 -13764689 - B4 SINE B4 -97 195 94 1 1409 2104 132 3 6 chr11 108079167 108079479 -13764377 - RLTR10E LTR ERVK 0 311 1 1 1409 477 256 70 140 chr11 108079479 108079571 -13764285 - B4 SINE B4 -199 93 10 1 1409 439 212 140 42 chr11 108079898 108080041 -13763815 + MTEa LTR MaLR 215 371 -8 1 1409 27 29 0 0 chr11 108080041 108080075 -13763781 + AT_rich Low_complexity Low_complexity 1 34 0 1 1409 198 350 65 46 chr11 108080107 108080215 -13763641 + MIRc SINE MIR 40 149 -119 1 1409 980 152 0 11 chr11 108080579 108080759 -13763097 + CT-rich Low_complexity Low_complexity 1 178 0 1 1409 570 297 66 25 chr11 108082035 108082232 -13761624 - MLT1C LTR MaLR -45 422 218 1 1409 706 290 106 26 chr11 108083464 108083804 -13760052 + Charlie13b DNA Charlie 89 455 -57 1 1409 185 241 0 100 chr11 108083884 108083944 -13759912 - MER5B DNA MER1_type -53 125 72 1 1409 234 137 59 0 chr11 108084384 108084435 -13759421 + ID4_ SINE ID 4 57 -26 1 1409 407 177 51 0 chr11 108085661 108085740 -13758116 + B3A SINE B2 1 83 -115 1 1409 568 203 50 25 chr11 108086546 108086667 -13757189 + B1F SINE Alu 25 148 -1 1 1409 1014 241 48 51 chr11 108086667 108086960 -13756896 + B4 SINE B4 1 292 0 1 1409 318 331 106 15 chr11 108087125 108087257 -13756599 - RSINE1 SINE B4 -17 148 5 1 1409 243 79 0 0 chr11 108088323 108088361 -13755495 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1409 936 270 54 18 chr11 108088442 108088721 -13755135 + B4A SINE B4 2 290 -2 1 1409 567 170 0 0 chr11 108090156 108090309 -13753547 + CT-rich Low_complexity Low_complexity 2 154 0 1 1409 366 23 0 0 chr11 108090309 108090352 -13753504 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1409 637 299 161 16 chr11 108093470 108093718 -13750138 + B4A SINE B4 7 290 -2 1 1409 527 314 63 38 chr11 108094459 108094721 -13749135 - MIR SINE MIR -1 267 1 1 1409 774 298 40 73 chr11 108095631 108095960 -13747896 - MTEa LTR MaLR 0 379 62 1 1409 182 326 33 11 chr11 108096147 108096237 -13747619 - MIR SINE MIR -8 254 163 1 1409 4750 53 10 5 chr11 108096962 108097610 -13746246 + L1_Mus2 LINE L1 5972 6566 0 1 1409 180 0 0 0 chr11 108097903 108097923 -13745933 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1409 198 0 0 0 chr11 108098846 108098868 -13744988 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1409 881 161 4 12 chr11 108099084 108099336 -13744520 + GA-rich Low_complexity Low_complexity 1 250 0 1 1409 396 0 0 0 chr11 108099545 108099589 -13744267 + (CAA)n Simple_repeat Simple_repeat 3 46 0 1 1409 299 331 128 0 chr11 108103157 108103290 -13740566 + RMER15 LTR ERVL 426 575 0 1 1409 239 297 115 33 chr11 108103820 108103942 -13739914 - Lx9 LINE L1 -174 7470 7339 1 1409 201 283 113 19 chr11 108104400 108104538 -13739318 + MIRm SINE MIR 33 187 -81 1 1409 263 232 188 0 chr11 108104621 108104690 -13739166 + ID4_ SINE ID 1 82 -1 1 1409 369 256 0 0 chr11 108106148 108106226 -13737630 + B1F SINE Alu 66 143 -6 1 1409 504 100 0 0 chr11 108106227 108106307 -13737549 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 1409 308 64 0 21 chr11 108106344 108106392 -13737464 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1409 541 285 17 73 chr11 108107473 108107651 -13736205 + B4A SINE B4 2 169 -123 1 1409 2444 135 186 35 chr11 108107656 108108146 -13735710 - RMER4B LTR ERVK -5 580 17 1 1409 393 306 0 9 chr11 108108154 108108266 -13735590 + B4A SINE B4 164 274 -18 1 1409 528 254 157 99 chr11 108108833 108109178 -13734678 + MLT1B LTR MaLR 6 370 -4 1 1409 719 92 9 0 chr11 108109260 108109369 -13734487 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 1 1409 204 67 0 0 chr11 108109439 108109469 -13734387 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1409 421 280 0 20 chr11 108109470 108109572 -13734284 - B4 SINE B4 -84 208 109 1 1409 264 346 0 55 chr11 108109474 108109584 -13734272 - B1F2 SINE Alu -34 115 12 1 1409 327 307 10 10 chr11 108109609 108109711 -13734145 - B4A SINE B4 -190 102 1 1 1409 346 175 0 0 chr11 108110318 108110375 -13733481 + ID_B1 SINE B4 168 224 0 1 1409 480 248 39 31 chr11 108110384 108110513 -13733343 + B1_Mur2 SINE Alu 3 132 -17 1 1409 528 30 0 0 chr11 108111154 108111220 -13732636 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1409 224 345 97 0 chr11 108111766 108111911 -13731945 + MIR SINE MIR 104 262 0 1 1409 722 311 60 50 chr11 108113682 108113983 -13729873 + MER21B LTR ERV1 19 322 -541 1 1409 345 191 117 54 chr11 108114381 108114492 -13729364 + MER21B LTR ERV1 411 528 -335 1 1409 312 250 271 28 chr11 108114759 108114866 -13728990 + RSINE1 SINE B4 4 136 -29 1 1409 297 0 0 0 chr11 108114870 108114903 -13728953 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 1409 311 0 0 25 chr11 108115551 108115591 -13728265 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1409 302 347 48 62 chr11 108115695 108115987 -13727869 - Charlie1a DNA MER1_type -1155 300 13 1 1409 512 271 74 0 chr11 108117778 108117796 -13726060 + ID SINE ID 63 89 -135 1 1409 281 269 8 126 chr11 108117796 108117901 -13725955 + PB1 SINE Alu 3 95 -32 1 1409 216 0 0 0 chr11 108117901 108117925 -13725931 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1409 281 269 8 126 chr11 108117925 108117938 -13725918 + PB1 SINE Alu 96 107 -20 1 1409 758 280 9 48 chr11 108118788 108119017 -13724839 + B4A SINE B4 41 260 -32 1 1409 525 32 0 0 chr11 108119017 108119080 -13724776 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1409 405 81 0 0 chr11 108119080 108119142 -13724714 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1409 306 236 0 0 chr11 108121590 108121645 -13722211 + B4A SINE B4 5 59 -233 1 1409 198 0 0 0 chr11 108122565 108122587 -13721269 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1409 901 290 103 26 chr11 108122852 108123355 -13720501 + L1MB2 LINE L1 5532 6073 -98 1 1409 690 271 126 28 chr11 108123363 108123481 -13720375 + Lx9 LINE L1 7359 7476 -168 1 1409 1185 79 0 0 chr11 108123481 108123981 -13719875 + (TG)n Simple_repeat Simple_repeat 1 500 0 1 1409 690 271 126 28 chr11 108123981 108124108 -13719748 + Lx9 LINE L1 7477 7633 -11 1 1409 25 0 0 0 chr11 108124108 108124133 -13719723 + AT_rich Low_complexity Low_complexity 1 25 0 1 1409 771 203 7 7 chr11 108124143 108124287 -13719569 + B1_Mur1 SINE Alu 1 144 -5 1 1409 902 264 73 47 chr11 108125282 108125516 -13718340 - B4A SINE B4 -19 273 34 1 1409 224 319 102 42 chr11 108125544 108125711 -13718145 - MIR SINE MIR -57 205 29 1 1409 24 0 0 0 chr11 108125752 108125776 -13718080 + AT_rich Low_complexity Low_complexity 1 24 0 1 1409 664 147 26 0 chr11 108125776 108125892 -13717964 - Lx4A LINE L1 -1 7057 6939 1 1409 2722 97 0 3 chr11 108125892 108126266 -13717590 + Lx4A LINE L1 5617 5989 -1069 1 1409 213 264 151 0 chr11 108126579 108126632 -13717224 + ID4_ SINE ID 18 78 -5 1 1409 286 105 0 0 chr11 108126632 108126670 -13717186 + (AGGGGG)n Simple_repeat Simple_repeat 5 42 0 1 1409 498 109 11 21 chr11 108126670 108126764 -13717092 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 1 1409 255 61 0 0 chr11 108127177 108127210 -13716646 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1409 253 326 27 34 chr11 108127470 108127616 -13716240 + L1M5 LINE L1 5570 5714 -410 1 1409 189 0 0 0 chr11 108127865 108127886 -13715970 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1409 702 75 0 11 chr11 108127921 108128016 -13715840 + B1_Mus2 SINE Alu 41 134 -13 1 1409 198 0 0 0 chr11 108128299 108128321 -13715535 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1409 237 296 49 0 chr11 108129325 108129406 -13714450 + L2a LINE L2 3291 3375 -51 1 1409 421 176 34 28 chr11 108131273 108131449 -13712407 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 1409 278 122 82 35 chr11 108131450 108131535 -13712321 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 2 1409 492 152 24 29 chr11 108131535 108131705 -13712151 + (TG)n Simple_repeat Simple_repeat 2 170 0 2 1409 279 242 0 0 chr11 108131731 108131830 -13712026 + (TG)n Simple_repeat Simple_repeat 1 99 0 2 1409 902 265 88 58 chr11 108132002 108132366 -13711490 + MTEa LTR MaLR 5 379 0 2 1409 284 250 0 0 chr11 108133568 108133628 -13710228 + B4 SINE B4 27 86 -206 2 1409 225 94 0 0 chr11 108133628 108133660 -13710196 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1409 621 248 68 0 chr11 108133666 108133799 -13710057 + B4 SINE B4 79 220 -72 2 1409 291 54 0 0 chr11 108133938 108133975 -13709881 + (CTCA)n Simple_repeat Simple_repeat 2 38 0 2 1410 550 241 51 67 chr11 108137869 108137913 -13705943 + ID_B1 SINE B4 49 195 -29 2 1410 775 123 69 0 chr11 108137913 108138022 -13705834 + B1_Mur4 SINE Alu 7 118 -32 2 1410 378 0 0 0 chr11 108138022 108138064 -13705792 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1410 775 123 69 0 chr11 108138064 108138084 -13705772 + B1_Mur4 SINE Alu 119 144 -6 2 1410 189 229 0 0 chr11 108138088 108138136 -13705720 + GA-rich Low_complexity Low_complexity 1 48 0 2 1410 306 331 51 29 chr11 108139120 108139257 -13704599 - MIR SINE MIR -2 260 121 2 1410 265 296 304 0 chr11 108139733 108139858 -13703998 - RSINE1 SINE B4 0 165 3 2 1410 320 363 29 12 chr11 108139893 108140066 -13703790 + L1M4 LINE L1 4979 5154 -992 2 1410 606 199 11 1 chr11 108140088 108140205 -13703651 + B1F2 SINE Alu 1 124 -3 2 1410 1103 194 5 15 chr11 108140274 108140478 -13703378 + B3 SINE B2 5 206 -10 2 1410 23 0 0 0 chr11 108140481 108140504 -13703352 + AT_rich Low_complexity Low_complexity 1 23 0 2 1410 697 308 46 40 chr11 108140514 108140862 -13702994 + L1M4 LINE L1 5382 5731 -453 2 1410 287 279 31 39 chr11 108140864 108140991 -13702865 - RMER12 LTR ERVK -477 845 720 2 1410 395 152 13 0 chr11 108140991 108141070 -13702786 + CT-rich Low_complexity Low_complexity 2 81 0 2 1410 568 238 18 53 chr11 108142307 108142476 -13701380 + RSINE1 SINE B4 3 165 0 2 1410 305 239 11 11 chr11 108142477 108142566 -13701290 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 1410 1042 228 10 0 chr11 108142708 108142914 -13700942 + B3 SINE B2 1 208 -8 2 1410 21 0 0 0 chr11 108142918 108142939 -13700917 + AT_rich Low_complexity Low_complexity 1 21 0 2 1410 960 285 71 49 chr11 108142947 108143235 -13700621 - Lx6 LINE L1 -9 7451 7165 2 1410 402 21 0 0 chr11 108143235 108143282 -13700574 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1410 960 285 71 49 chr11 108143282 108143399 -13700457 - Lx6 LINE L1 -296 7164 7037 2 1410 24 53 0 0 chr11 108143414 108143452 -13700404 + AT_rich Low_complexity Low_complexity 1 38 0 2 1410 29 28 0 0 chr11 108143472 108143508 -13700348 + AT_rich Low_complexity Low_complexity 1 36 0 2 1410 201 171 24 0 chr11 108143614 108143655 -13700201 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1410 3456 30 5 0 chr11 108143816 108144210 -13699646 - MTA_Mm LTR MaLR 0 396 1 2 1410 286 308 66 66 chr11 108144268 108144435 -13699421 - MIR SINE MIR -32 230 64 2 1410 277 176 0 19 chr11 108144436 108144488 -13699368 + PB1 SINE Alu 77 127 0 2 1410 565 215 6 17 chr11 108144717 108144897 -13698959 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1410 1010 254 70 12 chr11 108145234 108145477 -13698379 + B4A SINE B4 16 272 -20 2 1410 426 85 0 0 chr11 108145489 108145548 -13698308 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1410 268 388 12 0 chr11 108145569 108145654 -13698202 + PB1D10 SINE Alu 1 86 -31 2 1410 308 282 0 23 chr11 108145922 108146009 -13697847 + MER94 DNA AcHobo 41 125 -9 2 1410 1507 186 205 12 chr11 108147611 108147953 -13695903 + MTC LTR MaLR 4 411 -10 2 1410 373 244 13 0 chr11 108148295 108148373 -13695483 + B4A SINE B4 1 79 -213 2 1410 230 32 0 0 chr11 108148372 108148403 -13695453 - B3A SINE B2 -167 31 1 2 1410 418 323 0 0 chr11 108148403 108148501 -13695355 + B4 SINE B4 68 165 -127 2 1410 314 234 0 30 chr11 108148513 108148579 -13695277 + B3 SINE B2 1 64 -152 2 1410 306 0 0 0 chr11 108148588 108148622 -13695234 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1410 698 250 0 0 chr11 108149689 108149837 -13694019 + B1F2 SINE Alu 1 148 -1 2 1410 1165 204 208 13 chr11 108150129 108150245 -13693611 - ORR1D1 LTR MaLR 0 374 229 2 1410 180 0 0 0 chr11 108150245 108150265 -13693591 + (CAGG)n Simple_repeat Simple_repeat 3 22 0 2 1410 1165 204 208 13 chr11 108150265 108150461 -13693395 - ORR1D1 LTR MaLR -146 228 1 2 1410 207 267 0 0 chr11 108150475 108150550 -13693306 + GA-rich Low_complexity Low_complexity 2 76 0 2 1410 544 323 28 67 chr11 108151267 108151552 -13692304 + B4A SINE B4 1 274 -18 2 1410 408 204 88 44 chr11 108154550 108154663 -13689193 - PB1D9 SINE Alu -1 119 2 2 1410 208 239 167 14 chr11 108154690 108154762 -13689094 - MIR3 SINE MIR -25 183 101 2 1410 531 329 14 7 chr11 108154871 108155018 -13688838 + RSINE1 SINE B4 2 149 -16 2 1410 2283 111 26 110 chr11 108155193 108155619 -13688237 + ORR1B1 LTR MaLR 4 393 -1 2 1410 31 26 0 0 chr11 108156167 108156205 -13687651 + AT_rich Low_complexity Low_complexity 1 38 0 2 1410 244 294 166 47 chr11 108156702 108156895 -13686961 - MIRb SINE MIR -52 216 1 2 1410 439 281 54 128 chr11 108156902 108157106 -13686750 + ID_B1 SINE B4 36 224 0 2 1410 210 171 0 0 chr11 108157116 108157157 -13686699 + A-rich Low_complexity Low_complexity 1 41 0 2 1410 21 36 0 0 chr11 108157719 108157747 -13686109 + AT_rich Low_complexity Low_complexity 1 28 0 2 1410 297 0 0 0 chr11 108158490 108158523 -13685333 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1410 185 221 47 105 chr11 108159839 108159925 -13683931 + L3b LINE CR1 246 326 -156 2 1410 1307 221 58 128 chr11 108160428 108160858 -13682998 + MTD LTR MaLR 20 419 0 2 1410 180 0 0 0 chr11 108163832 108163852 -13680004 + (G)n Simple_repeat Simple_repeat 1 20 0 2 1410 362 354 0 0 chr11 108164105 108164218 -13679638 + PB1D7 SINE Alu 1 113 -7 2 1410 247 97 96 14 chr11 108164466 108164539 -13679317 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1410 280 232 18 0 chr11 108164552 108164608 -13679248 - RSINE1 SINE B4 -60 105 49 2 1410 234 311 15 18 chr11 108165256 108165339 -13678517 + ID4 SINE ID 2 79 -4 2 1410 351 0 0 0 chr11 108165449 108165488 -13678368 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1410 281 235 21 147 chr11 108165516 108165611 -13678245 - RSINE1 SINE B4 -81 84 2 2 1410 436 293 63 14 chr11 108165835 108165977 -13677879 - B3 SINE B2 -4 212 64 2 1410 329 188 0 28 chr11 108165986 108166057 -13677799 + ID2 SINE ID 2 70 -13 2 1410 355 274 29 13 chr11 108166099 108166253 -13677603 + B4A SINE B4 2 165 0 2 1410 612 172 32 32 chr11 108166898 108167024 -13676832 - ID_B1 SINE B4 -12 212 87 2 1410 1279 242 70 115 chr11 108167064 108167440 -13676416 + RMER5 LTR ERV1 15 394 -140 2 1410 1004 124 7 0 chr11 108167440 108167585 -13676271 + B1_Mur4 SINE Alu 5 150 0 2 1410 1279 242 70 115 chr11 108167585 108167694 -13676162 + RMER5 LTR ERV1 395 478 -56 2 1410 185 264 38 0 chr11 108167857 108167910 -13675946 + MIRb SINE MIR 120 174 -94 2 1410 479 209 96 43 chr11 108167967 108168082 -13675774 + RSINE1 SINE B4 3 123 -42 2 1410 237 33 0 0 chr11 108168083 108168113 -13675743 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1410 21 71 0 0 chr11 108169186 108169228 -13674628 + AT_rich Low_complexity Low_complexity 1 42 0 2 1410 950 225 55 61 chr11 108169231 108169524 -13674332 + B4A SINE B4 2 292 0 2 1410 225 0 0 0 chr11 108169685 108169710 -13674146 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 1410 1066 249 85 23 chr11 108169979 108170333 -13673523 + Lx9 LINE L1 7261 7636 -8 2 1410 480 35 0 0 chr11 108170443 108170501 -13673355 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2 1410 231 203 0 0 chr11 108170521 108170580 -13673276 + (ATTG)n Simple_repeat Simple_repeat 4 62 0 2 1410 249 283 0 0 chr11 108171767 108171820 -13672036 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1410 1248 227 5 0 chr11 108172049 108172269 -13671587 - ID_B1 SINE B4 -3 221 1 2 1410 225 0 0 0 chr11 108173678 108173703 -13670153 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2 1410 600 314 48 21 chr11 108174447 108174636 -13669220 + ID_B1 SINE B4 3 196 -28 2 1410 703 221 6 49 chr11 108175174 108175336 -13668520 + RSINE1 SINE B4 2 156 -9 2 1410 393 22 0 0 chr11 108175341 108175387 -13668469 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1410 378 0 0 0 chr11 108175522 108175564 -13668292 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1410 378 0 0 0 chr11 108176466 108176508 -13667348 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1410 656 248 97 7 chr11 108176508 108176662 -13667194 + ID_B1 SINE B4 54 221 -3 2 1410 225 94 0 0 chr11 108176692 108176724 -13667132 + (TAA)n Simple_repeat Simple_repeat 3 34 0 2 1410 695 269 75 10 chr11 108176738 108176900 -13666956 + B3 SINE B2 5 181 -35 2 1410 522 98 0 0 chr11 108176900 108176982 -13666874 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1410 695 269 75 10 chr11 108176982 108177018 -13666838 + B3 SINE B2 182 216 0 2 1410 1090 171 88 5 chr11 108177326 108177531 -13666325 + URR1A DNA MER1_type 5 226 0 2 1410 1291 299 53 89 chr11 108178244 108179053 -13664803 - L1MB3 LINE L1 -98 6085 5306 2 1410 26 64 0 0 chr11 108179087 108179134 -13664722 + AT_rich Low_complexity Low_complexity 1 47 0 2 1410 301 333 73 51 chr11 108179166 108179343 -13664513 + L1ME4a LINE L1 5936 6116 -8 2 1410 710 256 4 57 chr11 108179894 108180122 -13663734 + B3 SINE B2 1 216 0 2 1410 373 336 10 0 chr11 108181241 108181345 -13662511 + PB1D10 SINE Alu 2 106 -11 2 1410 384 22 0 0 chr11 108181357 108181402 -13662454 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1410 193 288 86 69 chr11 108183143 108183318 -13660538 + L2c LINE L2 2999 3176 -211 3 1410 698 173 8 45 chr11 108184309 108184442 -13659414 + B1_Mur3 SINE Alu 6 133 -16 3 1410 488 312 7 7 chr11 108184682 108184824 -13659032 - RSINE1 SINE B4 -12 153 12 3 1410 237 275 204 34 chr11 108184833 108184980 -13658876 + MIRb SINE MIR 97 268 0 3 1410 594 41 0 0 chr11 108185373 108185446 -13658410 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1410 218 175 0 0 chr11 108185884 108185924 -13657932 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 3 1410 443 208 8 0 chr11 108186020 108186140 -13657716 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1410 832 278 21 57 chr11 108186178 108186460 -13657396 - B4 SINE B4 -18 274 3 3 1410 513 189 136 56 chr11 108187927 108188089 -13655767 - MER3 DNA MER1_type -29 180 6 3 1410 532 254 58 26 chr11 108188480 108188670 -13655186 + L1MC4a LINE L1 7628 7823 -59 3 1410 348 24 0 0 chr11 108188683 108188724 -13655132 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1410 543 56 0 0 chr11 108188724 108188794 -13655062 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 1410 321 286 0 28 chr11 108188851 108188959 -13654897 + PB1D10 SINE Alu 5 109 -8 3 1410 1173 75 0 0 chr11 108189455 108189629 -13654227 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 1410 581 324 0 14 chr11 108189635 108189773 -13654083 - RSINE1 SINE B4 -28 137 2 3 1410 234 0 0 0 chr11 108190215 108190241 -13653615 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3 1410 574 303 161 0 chr11 108190677 108190888 -13652968 - B4A SINE B4 -46 246 2 3 1410 255 217 0 0 chr11 108190907 108190967 -13652889 + GA-rich Low_complexity Low_complexity 2 61 0 3 1410 255 318 11 11 chr11 108192221 108192310 -13651546 + MIR SINE MIR 40 128 -134 3 1410 211 281 129 0 chr11 108193534 108193646 -13650210 + MIR SINE MIR 45 175 -93 3 1410 24 0 0 0 chr11 108195223 108195247 -13648609 + AT_rich Low_complexity Low_complexity 1 24 0 3 1410 255 294 120 0 chr11 108195314 108195406 -13648450 - L2a LINE L2 -2 3424 3322 3 1410 446 315 17 85 chr11 108196301 108196478 -13647378 + B4 SINE B4 1 165 -127 3 1410 225 0 0 0 chr11 108196868 108196893 -13646963 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 3 1410 815 232 108 0 chr11 108197100 108197294 -13646562 + ID_B1 SINE B4 2 216 -8 3 1410 250 196 20 30 chr11 108198831 108198931 -13644925 + GA-rich Low_complexity Low_complexity 3 101 0 3 1410 649 193 0 9 chr11 108199049 108199164 -13644692 + PB1D9 SINE Alu 2 115 -5 3 1410 225 305 49 0 chr11 108199709 108199791 -13644065 + L1M5 LINE L1 5345 5430 -694 3 1410 180 0 0 0 chr11 108201678 108201698 -13642158 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1410 185 200 45 104 chr11 108202745 108202812 -13641044 - MIRc SINE MIR -7 261 199 3 1410 235 232 37 176 chr11 108203788 108203924 -13639932 - Charlie4z DNA MER1_type -20 147 31 3 1410 227 246 0 17 chr11 108205012 108205099 -13638757 + (CGG)n Simple_repeat Simple_repeat 1 85 0 3 1410 306 289 25 19 chr11 108205506 108205665 -13638191 + CT-rich Low_complexity Low_complexity 3 162 0 3 1410 415 235 12 0 chr11 108206385 108206466 -13637390 - B1F SINE Alu -62 87 6 3 1410 1622 165 216 9 chr11 108206783 108207125 -13636731 - MTC LTR MaLR -8 413 1 3 1410 234 81 0 0 chr11 108207263 108207300 -13636556 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1410 216 0 0 0 chr11 108208570 108208594 -13635262 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1410 217 342 96 9 chr11 108208888 108209003 -13634853 + L2 LINE L2 2681 2805 -614 3 1410 841 233 138 56 chr11 108209047 108209315 -13634541 - B4A SINE B4 0 292 3 3 1410 349 306 110 125 chr11 108209460 108209860 -13633996 + MLT1A1 LTR MaLR 3 396 -12 3 1410 723 271 88 23 chr11 108209995 108210256 -13633600 + B4 SINE B4 5 282 -10 3 1410 353 345 162 49 chr11 108210324 108210485 -13633371 + L1MC4a LINE L1 5402 5561 -2321 3 1410 1583 201 56 8 chr11 108210485 108210545 -13633311 - MTE2b LTR MaLR -3 376 316 3 1410 189 0 0 0 chr11 108210545 108210566 -13633290 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1410 1583 201 56 8 chr11 108210566 108210861 -13632995 - MTE2b LTR MaLR -64 315 5 3 1410 353 345 162 49 chr11 108210861 108211150 -13632706 + L1MC4a LINE L1 5562 5903 -1979 3 1410 414 0 0 0 chr11 108211237 108211283 -13632573 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1410 2265 267 79 12 chr11 108211371 108212031 -13631825 + Lx8 LINE L1 6423 7126 -347 3 1410 307 257 67 13 chr11 108212075 108212150 -13631706 - RSINE1 SINE B4 -85 80 2 3 1410 196 327 33 98 chr11 108212349 108212471 -13631385 + MIRc SINE MIR 38 151 -117 3 1410 516 16 0 0 chr11 108212518 108212579 -13631277 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1410 489 301 36 14 chr11 108213034 108213172 -13630684 - B1F SINE Alu -3 146 6 3 1410 207 0 0 0 chr11 108213192 108213215 -13630641 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1410 1119 52 0 0 chr11 108213215 108213350 -13630506 - B1_Mm SINE Alu -11 136 2 3 1410 22 35 0 0 chr11 108213353 108213382 -13630474 + AT_rich Low_complexity Low_complexity 1 29 0 3 1410 469 252 126 0 chr11 108213518 108213645 -13630211 + ID_B1 SINE B4 82 224 0 3 1410 1028 290 59 38 chr11 108213725 108214116 -13629740 + MTD LTR MaLR 1 399 -20 3 1410 529 284 176 30 chr11 108214554 108214790 -13629066 + B4A SINE B4 18 292 0 3 1410 375 23 0 0 chr11 108214802 108214846 -13629010 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1410 342 257 0 0 chr11 108214962 108215137 -13628719 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1410 337 267 40 0 chr11 108215258 108215333 -13628523 + ID4 SINE ID 6 83 0 3 1410 525 298 64 0 chr11 108215557 108215698 -13628158 + RSINE1 SINE B4 2 151 -14 3 1410 494 104 0 40 chr11 108215713 108215813 -13628043 + (TCTCCC)n Simple_repeat Simple_repeat 3 98 0 3 1410 202 74 0 0 chr11 108215813 108215840 -13628016 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1410 290 205 0 13 chr11 108215841 108215920 -13627936 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1410 381 263 145 48 chr11 108215945 108216013 -13627843 + ID SINE ID 2 81 -143 3 1410 315 286 94 9 chr11 108216013 108216119 -13627737 + PB1D9 SINE Alu 1 115 -5 3 1410 262 256 0 118 chr11 108216129 108216222 -13627634 + ID4_ SINE ID 2 83 0 3 1410 1080 58 14 21 chr11 108216252 108216394 -13627462 + B1_Mus1 SINE Alu 1 141 -7 3 1410 529 224 172 6 chr11 108216658 108216815 -13627041 + ORR1D1 LTR MaLR 152 334 -40 3 1410 356 275 101 0 chr11 108216806 108216915 -13626941 - B4A SINE B4 -171 121 2 3 1410 548 269 32 91 chr11 108217014 108217235 -13626621 - L1MA4 LINE L1 -274 6026 5819 3 1410 197 59 0 56 chr11 108217363 108217399 -13626457 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1410 382 277 133 84 chr11 108217486 108217517 -13626339 - CYRA11_Mm Unknown Y-chromosome -209 408 173 3 1410 689 194 196 41 chr11 108217517 108217711 -13626145 + URR1A DNA MER1_type 1 224 -2 3 1410 220 265 0 20 chr11 108217755 108217805 -13626051 + ID4_ SINE ID 5 53 -30 3 1410 448 197 0 133 chr11 108217813 108217948 -13625908 + PB1D10 SINE Alu 1 117 0 3 1410 207 267 37 7 chr11 108218420 108218498 -13625358 - MIR SINE MIR -88 180 98 3 1410 266 292 14 0 chr11 108219024 108219096 -13624760 + ID4 SINE ID 2 74 -9 3 1410 585 312 0 13 chr11 108219306 108219462 -13624394 + B3A SINE B2 2 155 -43 3 1410 675 117 0 67 chr11 108219467 108219660 -13624196 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1410 225 94 0 0 chr11 108219955 108219987 -13623869 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 3 1410 292 267 76 91 chr11 108220296 108220428 -13623428 - LTR48B LTR ERV1 -405 382 253 3 1410 352 296 70 56 chr11 108220463 108220606 -13623250 - LTR48B LTR ERV1 -499 145 1 3 1410 387 273 129 24 chr11 108220934 108221058 -13622798 - B1F2 SINE Alu 0 149 13 3 1410 369 0 0 0 chr11 108221760 108221801 -13622055 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1410 609 191 0 45 chr11 108222049 108222159 -13621697 - B1_Mur1 SINE Alu -19 130 26 3 1410 213 39 0 0 chr11 108222186 108222212 -13621644 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 3 1410 516 289 163 0 chr11 108222212 108222395 -13621461 - B4A SINE B4 -75 217 3 3 1410 276 30 0 0 chr11 108222687 108222720 -13621136 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1410 1198 262 143 102 chr11 108222726 108223273 -13620583 + L1MA5 LINE L1 5517 6121 -179 3 1410 537 242 268 22 chr11 108223273 108223501 -13620355 - B4 SINE B4 -8 284 1 3 1410 1198 262 143 102 chr11 108223501 108223650 -13620206 + L1MA5 LINE L1 6122 6242 -58 3 1410 410 116 43 14 chr11 108223823 108223893 -13619963 + ID_B1 SINE B4 144 215 -9 3 1410 958 40 0 16 chr11 108223885 108224013 -13619843 + B1_Mus1 SINE Alu 22 147 -1 3 1410 439 200 8 129 chr11 108224125 108224257 -13619599 - PB1D9 SINE Alu -3 117 2 3 1410 581 269 0 14 chr11 108224464 108224611 -13619245 + B1F SINE Alu 5 149 0 3 1410 413 286 28 76 chr11 108225030 108225077 -13618779 - B4A SINE B4 -20 272 234 3 1410 1093 194 19 9 chr11 108225077 108225290 -13618566 - B3 SINE B2 0 216 2 3 1410 413 286 28 76 chr11 108225290 108225386 -13618470 - B4A SINE B4 -59 233 136 3 1410 260 233 189 0 chr11 108225451 108225541 -13618315 - ID_B1 SINE B4 -113 111 5 3 1410 186 191 0 0 chr11 108226548 108226590 -13617266 + CT-rich Low_complexity Low_complexity 2 43 0 3 1410 706 277 50 23 chr11 108226970 108227188 -13616668 - ID_B1 SINE B4 0 224 1 3 1410 288 323 45 15 chr11 108227211 108227343 -13616513 - MER5A DNA MER1_type -9 180 45 3 1410 469 284 14 34 chr11 108227656 108227802 -13616054 - RSINE1 SINE B4 -21 144 2 3 1410 277 311 37 28 chr11 108227863 108227972 -13615884 - MIRc SINE MIR -141 127 18 4 1410 263 28 28 0 chr11 108228021 108228057 -13615799 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1410 201 309 51 41 chr11 108228583 108228681 -13615175 + MIRb SINE MIR 25 123 -145 4 1410 728 252 66 41 chr11 108228879 108229123 -13614733 + MTD LTR MaLR 9 258 -161 4 1410 445 336 97 61 chr11 108229127 108229539 -13614317 - Lx8 LINE L1 0 7473 7047 4 1410 403 140 258 10 chr11 108229569 108229690 -13614166 + MTD LTR MaLR 237 404 -15 4 1410 821 246 23 14 chr11 108229957 108230175 -13613681 + L1MB8 LINE L1 5649 5868 -310 4 1410 228 78 19 56 chr11 108230178 108230232 -13613624 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1410 248 185 111 0 chr11 108230237 108230291 -13613565 + L1MB8 LINE L1 5875 5934 -249 4 1410 208 300 9 74 chr11 108230877 108230985 -13612871 + L3 LINE CR1 4312 4412 -77 4 1410 622 287 87 53 chr11 108231726 108231991 -13611865 + B4 SINE B4 13 286 -6 4 1410 225 0 0 0 chr11 108231994 108232019 -13611837 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1410 692 239 29 16 chr11 108232058 108232283 -13611573 - L1MA6 LINE L1 -125 6178 5948 4 1410 245 305 45 45 chr11 108232421 108232531 -13611325 + MIR SINE MIR 15 124 -138 4 1410 29 0 0 0 chr11 108233054 108233083 -13610773 + AT_rich Low_complexity Low_complexity 1 29 0 4 1410 830 278 107 38 chr11 108233694 108234202 -13609654 + L1MA5A LINE L1 5386 5959 -230 4 1410 212 162 0 0 chr11 108234363 108234400 -13609456 + BC1_Mm scRNA scRNA 2 38 -114 4 1410 1597 165 54 97 chr11 108234409 108234779 -13609077 + ORR1B1 LTR MaLR 41 394 0 4 1410 229 254 0 0 chr11 108234779 108234838 -13609018 + BC1_Mm scRNA scRNA 36 94 -58 4 1410 669 260 195 13 chr11 108235124 108235432 -13608424 - MLT1A1 LTR MaLR -44 364 1 4 1410 471 263 123 94 chr11 108235570 108235847 -13608009 - B4 SINE B4 0 292 8 4 1410 192 77 0 0 chr11 108235894 108235920 -13607936 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1410 1114 49 0 0 chr11 108235928 108236072 -13607784 - B2_Mm2 SINE B2 -51 144 1 4 1410 591 308 114 31 chr11 108236277 108236602 -13607254 + Tigger7 DNA MER2_type 1 352 -2139 4 1410 363 250 115 0 chr11 108236628 108236732 -13607124 + PB1D7 SINE Alu 5 120 0 4 1410 355 318 126 20 chr11 108237308 108237459 -13606397 + B4 SINE B4 3 169 -123 4 1410 1931 201 19 50 chr11 108237460 108237880 -13605976 + MTB_Mm LTR MaLR 1 407 0 4 1410 309 36 55 0 chr11 108237928 108237983 -13605873 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 4 1410 351 0 0 0 chr11 108238072 108238111 -13605745 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1410 332 277 28 55 chr11 108238114 108238259 -13605597 - MER5A DNA MER1_type -48 141 1 4 1410 733 176 6 51 chr11 108238374 108238530 -13605326 - B1_Mur1 SINE Alu 0 149 1 4 1410 420 55 0 0 chr11 108238928 108238983 -13604873 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1410 797 256 39 105 chr11 108239839 108240144 -13603712 - B4 SINE B4 -6 286 2 4 1410 447 19 0 0 chr11 108240938 108240990 -13602866 + (TCC)n Simple_repeat Simple_repeat 1 52 0 4 1410 2368 71 55 3 chr11 108241082 108241392 -13602464 - ORR1A3 LTR MaLR 0 326 1 4 1410 278 267 107 111 chr11 108241837 108242090 -13601766 - MER34A1 LTR ERV1 0 587 336 4 1410 771 211 105 5 chr11 108242399 108242590 -13601266 + ORR1E LTR MaLR 20 229 -130 4 1410 414 0 0 0 chr11 108242733 108242779 -13601077 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1410 378 0 0 0 chr11 108242780 108242822 -13601034 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1410 601 227 16 0 chr11 108243161 108243289 -13600567 + B1_Mur1 SINE Alu 9 138 -11 4 1410 272 157 165 24 chr11 108243292 108243377 -13600479 - Lx8 LINE L1 0 7473 7377 4 1410 1861 188 93 24 chr11 108243396 108243849 -13600007 + RMER5 LTR ERV1 43 526 -8 4 1410 2001 262 26 24 chr11 108243901 108244166 -13599690 - Lx8 LINE L1 -146 7327 7066 4 1410 2260 185 141 18 chr11 108244166 108244678 -13599178 - RMER15 LTR ERVL 0 575 1 4 1410 2001 262 26 24 chr11 108244678 108244955 -13598901 - Lx8 LINE L1 -408 7065 6784 4 1410 564 15 0 0 chr11 108245112 108245177 -13598679 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1410 417 39 0 0 chr11 108245700 108245751 -13598105 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 4 1410 246 32 0 0 chr11 108246066 108246097 -13597759 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1410 444 266 116 88 chr11 108246245 108246529 -13597327 - B4 SINE B4 0 292 1 4 1410 486 272 19 81 chr11 108247048 108247196 -13596660 + RSINE1 SINE B4 16 154 -11 4 1410 468 0 0 0 chr11 108247196 108247248 -13596608 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1410 486 272 19 81 chr11 108247248 108247259 -13596597 + RSINE1 SINE B4 155 165 0 4 1410 24 0 0 0 chr11 108247265 108247289 -13596567 + AT_rich Low_complexity Low_complexity 1 24 0 4 1410 770 208 7 7 chr11 108247289 108247434 -13596422 + B1_Mur2 SINE Alu 3 147 -2 4 1410 540 0 0 0 chr11 108247734 108247794 -13596062 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1410 214 274 16 16 chr11 108247808 108247871 -13595985 - RSINE1 SINE B4 -15 150 88 4 1410 261 75 0 0 chr11 108248099 108248139 -13595717 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1410 780 32 0 0 chr11 108248302 108248397 -13595459 + (TC)n Simple_repeat Simple_repeat 2 96 0 4 1410 29620 67 2 6 chr11 108248411 108252952 -13590904 - L1Md_F2 LINE L1 0 6582 2058 4 1410 877 101 7 7 chr11 108252952 108253092 -13590764 + (TTTC)n Simple_repeat Simple_repeat 3 142 0 4 1410 656 274 68 82 chr11 108253817 108254036 -13589820 + B3 SINE B2 1 216 0 4 1410 360 178 41 0 chr11 108254066 108254139 -13589717 + ID4_ SINE ID 4 79 -4 4 1410 435 319 74 31 chr11 108254239 108254495 -13589361 - Lx8 LINE L1 -4 7469 7203 4 1410 22 0 0 0 chr11 108254548 108254570 -13589286 + AT_rich Low_complexity Low_complexity 1 22 0 4 1410 281 268 0 102 chr11 108254576 108254684 -13589172 - L1MC4 LINE L1 -3 7782 7686 4 1410 618 290 95 23 chr11 108254939 108255288 -13588568 - L1MC4 LINE L1 -571 7471 7098 4 1410 405 0 0 0 chr11 108255337 108255382 -13588474 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1410 240 35 0 0 chr11 108255382 108255410 -13588446 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1410 269 281 32 43 chr11 108255435 108255528 -13588328 - MER89 LTR ERV1 -465 94 3 4 1410 528 278 46 92 chr11 108255951 108256169 -13587687 - B3 SINE B2 -2 214 7 4 1410 200 111 28 0 chr11 108256306 108256342 -13587514 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 4 1410 420 20 0 0 chr11 108257481 108257530 -13586326 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1410 315 226 163 39 chr11 108257839 108257968 -13585888 - ID_B1 SINE B4 0 224 80 4 1410 1827 166 102 3 chr11 108259171 108259515 -13584341 - ORR1C1 LTR MaLR 0 378 1 4 1410 576 214 63 112 chr11 108259517 108259722 -13584134 - B3A SINE B2 0 198 4 4 1410 732 43 0 0 chr11 108260246 108260338 -13583518 + (TTCTC)n Simple_repeat Simple_repeat 4 95 0 4 1410 809 168 7 0 chr11 108260366 108260521 -13583335 + CT-rich Low_complexity Low_complexity 1 156 0 4 1410 2981 14 2 92 chr11 108260521 108260924 -13582932 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1410 6935 39 4 4 chr11 108260924 108261738 -13582118 - IAPEz-int LTR ERVK 0 6481 5668 4 1410 21370 16 0 0 chr11 108261728 108264072 -13579784 - IAPEz-int LTR ERVK -927 5554 3210 4 1410 7415 101 76 60 chr11 108264071 108265356 -13578500 - IAPEz-int LTR ERVK -5168 1313 8 4 176 2981 14 2 92 chr11 108265356 108265759 -13578097 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1411 291 28 0 0 chr11 108265763 108265799 -13578057 + (TTTC)n Simple_repeat Simple_repeat 3 38 0 4 1411 1048 106 0 7 chr11 108265801 108265943 -13577913 - B1_Mus1 SINE Alu -5 143 3 4 1411 432 97 0 0 chr11 108266328 108266390 -13577466 + (TCCCC)n Simple_repeat Simple_repeat 5 66 0 4 1411 922 160 37 11 chr11 108266601 108266790 -13577066 - URR1A DNA MER1_type 0 226 33 4 1411 221 171 24 0 chr11 108267810 108267851 -13576005 + CT-rich Low_complexity Low_complexity 2 43 0 4 1411 1221 71 107 0 chr11 108268021 108268190 -13575666 + B2_Mm2 SINE B2 1 187 -8 4 1411 397 368 0 36 chr11 108268199 108268337 -13575519 - RSINE1 SINE B4 -28 137 5 4 1411 516 59 0 0 chr11 108268345 108268413 -13575443 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 4 1411 609 27 0 0 chr11 108268413 108268488 -13575368 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 4 1411 212 135 0 0 chr11 108268505 108268542 -13575314 - B1_Mur4 SINE Alu -65 85 49 4 1411 785 208 0 0 chr11 108268972 108269116 -13574740 - B1_Mur4 SINE Alu -6 144 1 4 1411 491 286 29 70 chr11 108269194 108269438 -13574418 - RMER15 LTR ERVL -64 511 278 4 1411 450 287 9 9 chr11 108269567 108269683 -13574173 - ID_B1 SINE B4 -28 196 81 4 1411 199 308 90 0 chr11 108269718 108269796 -13574060 - MIRm SINE MIR -18 258 174 4 1411 678 11 0 32 chr11 108270923 108271017 -13572839 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 4 1411 1149 82 0 0 chr11 108271018 108271165 -13572691 - B1_Mus2 SINE Alu 0 147 1 4 1411 676 222 30 41 chr11 108271210 108271379 -13572477 - B3A SINE B2 -3 195 29 4 1411 222 191 0 0 chr11 108271974 108272021 -13571835 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1411 687 257 122 75 chr11 108272043 108272321 -13571535 - B4A SINE B4 0 292 2 4 1411 222 191 0 0 chr11 108272474 108272521 -13571335 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1411 687 257 122 75 chr11 108272543 108272821 -13571035 - B4A SINE B4 0 292 2 4 1411 239 264 28 0 chr11 108272821 108272891 -13570965 - MER5A DNA MER1_type -37 152 81 4 1411 225 239 0 0 chr11 108272966 108273012 -13570844 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1411 582 255 26 19 chr11 108273078 108273234 -13570622 - RSINE1 SINE B4 -4 161 5 4 1411 490 41 27 0 chr11 108274340 108274413 -13569443 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1411 836 234 121 19 chr11 108274433 108274690 -13569166 - B4A SINE B4 -8 284 2 4 1411 840 242 40 67 chr11 108274808 108275105 -13568751 + B4A SINE B4 3 291 -1 4 1411 257 365 57 35 chr11 108276149 108276379 -13567477 + L2 LINE L2 1176 1410 -2009 4 1411 1955 290 87 42 chr11 108276458 108277203 -13566653 + MTE-int LTR MaLR 787 1565 -15 4 1411 475 279 43 87 chr11 108277237 108277490 -13566366 + MTEb LTR MaLR 94 379 0 5 1411 645 14 0 0 chr11 108277633 108277707 -13566149 + (CAAAC)n Simple_repeat Simple_repeat 1 74 0 5 1411 932 120 27 0 chr11 108277715 108277866 -13565990 + B2_Mm2 SINE B2 2 179 -37 5 1411 317 43 21 0 chr11 108277867 108277914 -13565942 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1411 3479 202 36 11 chr11 108278080 108278873 -13564983 + RMER1B Other Other 176 1062 -4 5 1411 827 249 77 113 chr11 108279139 108279465 -13564391 - MTE2b LTR MaLR -9 370 57 5 1411 246 333 39 122 chr11 108279564 108279745 -13564111 - MTE-int LTR MaLR -821 759 594 5 1411 28 61 0 0 chr11 108279775 108279824 -13564032 + AT_rich Low_complexity Low_complexity 1 49 0 5 1411 345 233 82 0 chr11 108279901 108279974 -13563882 + RSINE1 SINE B4 3 81 -84 5 1411 180 0 0 0 chr11 108279989 108280009 -13563847 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1411 219 139 0 0 chr11 108280132 108280168 -13563688 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 5 1411 1499 213 139 86 chr11 108280246 108280381 -13563475 - MT2A LTR ERVL -69 464 365 5 1411 994 87 65 7 chr11 108280381 108280520 -13563336 - B1_Mus1 SINE Alu 0 148 2 5 1411 1499 213 139 86 chr11 108280520 108280815 -13563041 - MT2A LTR ERVL -169 364 11 5 1411 222 37 0 0 chr11 108281062 108281089 -13562767 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 5 1411 416 290 129 14 chr11 108281693 108281833 -13562023 + RSINE1 SINE B4 2 157 -8 5 1411 21 0 0 0 chr11 108281845 108281866 -13561990 + AT_rich Low_complexity Low_complexity 1 21 0 5 1411 1627 151 83 111 chr11 108281988 108282383 -13561473 - ORR1C2 LTR MaLR 0 384 1 5 1411 777 303 56 49 chr11 108282695 108282983 -13560873 + B4A SINE B4 3 292 0 5 1411 1053 118 7 20 chr11 108283041 108283188 -13560668 - B1_Mus2 SINE Alu 0 147 3 5 1411 207 0 0 0 chr11 108283370 108283393 -13560463 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1411 609 323 112 19 chr11 108283945 108284204 -13559652 - B4A SINE B4 0 292 10 5 1411 315 0 0 0 chr11 108284292 108284327 -13559529 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1411 307 242 59 59 chr11 108285182 108285283 -13558573 - L1MA8 LINE L1 -177 6114 6014 5 1411 294 103 0 0 chr11 108287282 108287321 -13556535 - PB1D9 SINE Alu -48 72 34 5 1411 360 299 55 8 chr11 108287633 108287761 -13556095 - B4A SINE B4 -33 259 126 5 1411 570 177 50 18 chr11 108288294 108288427 -13555429 - B1_Mur4 SINE Alu -5 145 1 5 1411 274 331 88 29 chr11 108288427 108288468 -13555388 - MT2B LTR ERVL -439 162 114 5 1411 680 218 72 72 chr11 108288675 108288883 -13554973 - B4 SINE B4 -20 272 65 5 1411 369 288 0 0 chr11 108289614 108289694 -13554162 - ID4_ SINE ID -2 81 2 5 1411 1061 265 63 7 chr11 108289863 108290133 -13553723 + B4A SINE B4 1 285 -7 5 1411 1260 61 0 0 chr11 108291742 108291889 -13551967 - B1_Mus2 SINE Alu 0 147 1 5 1411 282 236 18 0 chr11 108292673 108292728 -13551128 - ID4_ SINE ID 0 83 28 5 1411 390 42 0 0 chr11 108292859 108292907 -13550949 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1411 944 245 78 12 chr11 108292923 108293167 -13550689 - B4A SINE B4 -32 260 1 5 1411 873 55 0 0 chr11 108293641 108293751 -13550105 + L1_Mus2 LINE L1 5865 5974 -592 5 1411 447 307 166 19 chr11 108293750 108294069 -13549787 - L1M5 LINE L1 -468 5711 5346 5 1411 257 333 92 0 chr11 108294095 108294269 -13549587 - L1MA4 LINE L1 -10 6290 6101 5 1411 501 93 50 110 chr11 108294486 108294610 -13549246 - RMER17C LTR ERVK -135 275 167 5 1411 333 0 0 0 chr11 108294610 108294647 -13549209 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1411 501 93 50 110 chr11 108294647 108294704 -13549152 - RMER17C LTR ERVK -244 166 105 5 1411 612 294 143 54 chr11 108294720 108295349 -13548507 - L1MD LINE L1 -910 5236 4552 5 1411 600 286 14 0 chr11 108295597 108295737 -13548119 - B1F1 SINE Alu -7 142 1 5 1411 598 303 47 40 chr11 108296697 108296993 -13546863 - L1MA4 LINE L1 -278 6022 5725 5 1411 486 309 71 33 chr11 108298246 108298430 -13545426 + MER58A DNA MER1_type 34 224 0 5 1411 192 40 0 0 chr11 108299236 108299261 -13544595 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1411 393 153 0 0 chr11 108299281 108299353 -13544503 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1411 1195 69 0 7 chr11 108299638 108299784 -13544072 - B1_Mus2 SINE Alu -2 145 1 5 1411 488 299 160 23 chr11 108299861 108299902 -13543954 - Tigger7 DNA MER2_type -2229 262 216 5 1411 1904 191 92 45 chr11 108299902 108300113 -13543743 - MTD LTR MaLR 0 419 197 5 1411 1270 56 92 38 chr11 108300113 108300297 -13543559 - B2_Mm2 SINE B2 0 195 2 5 1411 1904 191 92 45 chr11 108300297 108300485 -13543371 - MTD LTR MaLR -223 196 1 5 1411 488 299 160 23 chr11 108300485 108300662 -13543194 - Tigger7 DNA MER2_type -2276 215 14 5 1411 851 103 29 7 chr11 108301297 108301434 -13542422 + URR1B DNA MER1_type 86 225 0 5 1411 23 33 0 0 chr11 108301552 108301582 -13542274 + AT_rich Low_complexity Low_complexity 1 30 0 5 1411 209 171 0 0 chr11 108302137 108302172 -13541684 + C-rich Low_complexity Low_complexity 1 35 0 5 1411 396 0 0 0 chr11 108302172 108302216 -13541640 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1411 1200 55 14 0 chr11 108302259 108302404 -13541452 - B1_Mus1 SINE Alu 0 148 2 5 1411 2393 113 0 24 chr11 108302431 108302765 -13541091 - ORR1A3 LTR MaLR 0 326 1 5 1411 285 98 0 0 chr11 108303727 108303768 -13540088 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 1411 21 0 0 0 chr11 108304115 108304136 -13539720 + AT_rich Low_complexity Low_complexity 1 21 0 5 1411 779 212 25 49 chr11 108304138 108304341 -13539515 - B3A SINE B2 0 198 1 5 1411 1039 277 114 9 chr11 108304433 108304775 -13539081 - MTEa LTR MaLR 0 379 2 5 1411 527 261 99 0 chr11 108306581 108306723 -13537133 + MLT1F2 LTR MaLR 1 156 -404 5 1411 399 329 70 61 chr11 108306791 108307021 -13536835 + MLT1F2 LTR MaLR 380 611 -13 5 1411 453 291 88 33 chr11 108307388 108307569 -13536287 - MER74B LTR ERVL -4 618 428 5 1411 537 136 0 0 chr11 108307913 108308016 -13535840 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 1411 444 37 0 0 chr11 108308044 108308098 -13535758 + (CATA)n Simple_repeat Simple_repeat 1 54 0 5 1411 982 210 35 35 chr11 108308590 108308792 -13535064 - B3 SINE B2 -13 203 2 5 1411 296 346 0 19 chr11 108308863 108308966 -13534890 + MIR SINE MIR 45 145 -117 5 1411 677 204 301 6 chr11 108309253 108309426 -13534430 - ID_B1 SINE B4 0 224 1 5 1411 847 270 48 71 chr11 108309877 108310172 -13533684 - B4A SINE B4 -2 290 3 5 1411 2163 157 62 35 chr11 108310293 108310695 -13533161 + MTC LTR MaLR 1 413 -8 5 1411 245 252 104 90 chr11 108311664 108311808 -13532048 + MER3 DNA MER1_type 5 150 -59 5 1411 2147 91 38 25 chr11 108312913 108313228 -13530628 + ORR1A2 LTR MaLR 1 319 -8 5 1411 10616 149 77 12 chr11 108313233 108315076 -13528780 + ORR1A2-int LTR MaLR 2 1963 0 5 1411 1928 134 13 26 chr11 108315076 108315383 -13528473 + ORR1A2 LTR MaLR 1 303 -24 5 1411 530 290 174 65 chr11 108316243 108316483 -13527373 - L1ME3A LINE L1 -22 6151 5935 5 1411 1093 122 7 0 chr11 108316483 108316631 -13527225 - B1_Mur4 SINE Alu 0 150 2 5 1411 530 290 174 65 chr11 108316631 108316646 -13527210 - L1ME3A LINE L1 -239 5934 5918 5 1411 264 59 0 0 chr11 108316646 108316680 -13527176 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5 1411 530 290 174 65 chr11 108316680 108317232 -13526624 - L1ME3A LINE L1 -256 5917 5256 5 1411 701 273 28 102 chr11 108317265 108317550 -13526306 + B4A SINE B4 2 265 -27 5 1411 212 143 24 0 chr11 108317829 108317871 -13525985 + GA-rich Low_complexity Low_complexity 1 43 0 5 1411 335 337 69 29 chr11 108318033 108318308 -13525548 - L1ME3A LINE L1 -1037 5109 4824 5 1411 255 333 0 53 chr11 108318345 108318421 -13525435 - ID4_ SINE ID -6 77 6 5 1411 265 263 0 0 chr11 108318491 108318548 -13525308 - B4A SINE B4 0 292 236 5 1411 249 204 0 0 chr11 108318529 108318578 -13525278 + MTE2b LTR MaLR 8 56 -323 5 1411 804 168 197 2 chr11 108318680 108318875 -13524981 - ORR1C2 LTR MaLR -2 382 149 5 1411 1062 203 34 23 chr11 108318930 108319192 -13524664 - ORR1C2 LTR MaLR -119 265 1 5 1411 243 170 73 83 chr11 108319398 108319507 -13524349 - L1MD LINE L1 -883 5461 5354 5 1411 830 300 207 68 chr11 108319508 108320562 -13523294 - MLT1H-int LTR MaLR -225 1264 1 5 1411 290 349 91 67 chr11 108320855 108321064 -13522792 - MLT1H LTR MaLR -250 299 58 5 1411 458 287 156 65 chr11 108321212 108321279 -13522577 - B4A SINE B4 0 292 227 5 1411 462 18 0 0 chr11 108321279 108321334 -13522522 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1411 458 287 156 65 chr11 108321334 108321497 -13522359 - B4A SINE B4 -66 226 41 5 1411 291 211 0 111 chr11 108321664 108321994 -13521862 + CT-rich Low_complexity Low_complexity 1 293 0 5 1411 492 269 41 0 chr11 108322104 108322249 -13521607 - Lx9 LINE L1 -213 7431 7281 5 1411 436 283 48 11 chr11 108322376 108322593 -13521263 + Lx8 LINE L1 6851 7205 -439 5 1411 215 226 19 0 chr11 108322812 108322865 -13520991 + CT-rich Low_complexity Low_complexity 1 54 0 5 1411 1281 251 62 23 chr11 108322880 108323273 -13520583 + MTD LTR MaLR 5 419 0 5 1411 467 273 45 9 chr11 108323279 108323390 -13520466 - B1F SINE Alu -32 117 3 5 1411 267 289 53 88 chr11 108323289 108323403 -13520453 - MT2B LTR ERVL -341 260 151 5 1411 1153 103 0 0 chr11 108323445 108323591 -13520265 + B1_Mus1 SINE Alu 3 148 0 5 1411 834 294 108 22 chr11 108323642 108324049 -13519807 - L1M2 LINE L1 -1363 5479 5038 5 1411 3992 55 0 0 chr11 108324049 108324507 -13519349 - L1_Mus1 LINE L1 0 6567 6110 5 1411 824 287 125 14 chr11 108324632 108325145 -13518711 - L1M2 LINE L1 -2722 4120 3551 5 1411 27 49 0 0 chr11 108325260 108325301 -13518555 + AT_rich Low_complexity Low_complexity 1 41 0 5 1411 442 244 97 112 chr11 108325347 108325611 -13518245 + MER44B DNA MER2_type 1 249 -301 5 1411 771 288 93 55 chr11 108325868 108326587 -13517269 - L1M2 LINE L1 -4153 2696 1551 5 1411 259 209 9 9 chr11 108326608 108326714 -13517142 + (TG)n Simple_repeat Simple_repeat 1 106 0 5 1411 847 232 66 30 chr11 108326806 108327077 -13516779 + RLTR15 LTR ERVK 1 281 -78 5 1411 238 260 40 14 chr11 108327167 108327241 -13516615 - B3 SINE B2 -139 77 2 5 1411 297 0 0 0 chr11 108327398 108327431 -13516425 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 5 1411 308 164 148 0 chr11 108327459 108327520 -13516336 - B1F SINE Alu -65 84 15 5 1411 266 340 90 32 chr11 108330211 108330366 -13513490 - RSINE1 SINE B4 0 165 2 6 1411 228 242 15 0 chr11 108330561 108330627 -13513229 - Tigger7 DNA MER2_type -2384 107 41 6 1411 841 238 53 5 chr11 108330861 108331051 -13512805 - B3 SINE B2 -17 199 1 6 1411 186 43 0 0 chr11 108331427 108331450 -13512406 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 6 1411 929 121 0 22 chr11 108331801 108331936 -13511920 + B1_Mur3 SINE Alu 7 138 -11 6 1411 291 54 0 0 chr11 108331936 108331973 -13511883 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1411 234 316 0 21 chr11 108333223 108333320 -13510536 + CT-rich Low_complexity Low_complexity 2 96 0 6 1411 428 273 68 8 chr11 108334785 108334918 -13508938 - B1_Mur2 SINE Alu -8 141 1 6 1411 23 54 0 0 chr11 108335085 108335122 -13508734 + AT_rich Low_complexity Low_complexity 1 37 0 6 1411 1167 81 0 0 chr11 108335174 108335322 -13508534 + B1_Mus1 SINE Alu 1 148 0 6 1411 705 110 0 0 chr11 108335322 108335449 -13508407 + (GAGAA)n Simple_repeat Simple_repeat 3 129 0 6 1411 531 0 0 0 chr11 108335449 108335508 -13508348 + (CAAGA)n Simple_repeat Simple_repeat 1 59 0 6 1411 21 0 0 0 chr11 108335849 108335870 -13507986 + AT_rich Low_complexity Low_complexity 1 21 0 6 1411 3248 89 4 39 chr11 108336341 108336833 -13507023 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1411 24 0 0 0 chr11 108337991 108338015 -13505841 + AT_rich Low_complexity Low_complexity 1 24 0 6 1411 546 129 24 0 chr11 108338355 108338440 -13505416 - B3 SINE B2 -114 102 16 6 1411 25 0 0 0 chr11 108339304 108339329 -13504527 + AT_rich Low_complexity Low_complexity 1 25 0 6 1411 356 333 73 83 chr11 108339478 108339779 -13504077 + L1MEf LINE L1 78 375 -5867 6 1411 395 53 35 0 chr11 108339800 108339857 -13503999 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 6 1411 336 389 113 67 chr11 108340015 108340315 -13503541 + L1MEf LINE L1 237 550 -5692 6 1411 270 254 30 0 chr11 108340734 108340801 -13503055 + ID_B1 SINE B4 152 220 -4 6 1411 264 267 212 0 chr11 108340807 108340953 -13502903 + L1MEf LINE L1 2835 3011 -3135 6 1411 1047 332 65 19 chr11 108340983 108341456 -13502400 + L1M4b LINE L1 2 496 -6838 6 1411 248 264 120 14 chr11 108341488 108341630 -13502226 + L1M4b LINE L1 668 824 -6510 6 1411 376 333 66 43 chr11 108341627 108341931 -13501925 + L1M4b LINE L1 1094 1404 -5930 6 1411 666 299 95 11 chr11 108342073 108342631 -13501225 + L1M4b LINE L1 3930 4534 -2472 6 1411 276 325 41 53 chr11 108342885 108343151 -13500705 + L1M5 LINE L1 5596 5858 -321 6 1411 1672 191 130 3 chr11 108343310 108343672 -13500184 + MTD LTR MaLR 12 419 0 6 1411 240 341 11 23 chr11 108343969 108344056 -13499800 + B4A SINE B4 82 167 -125 6 1411 477 248 86 60 chr11 108343979 108344095 -13499761 + PB1D7 SINE Alu 9 127 0 6 1411 457 254 55 0 chr11 108344106 108344216 -13499640 + RSINE1 SINE B4 3 118 -47 6 1411 333 0 0 0 chr11 108344223 108344260 -13499596 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1411 504 241 83 0 chr11 108344671 108344779 -13499077 - RSINE1 SINE B4 -47 118 2 6 1411 21 36 0 0 chr11 108346936 108346964 -13496892 + AT_rich Low_complexity Low_complexity 1 28 0 6 1411 775 236 33 28 chr11 108349162 108349376 -13494480 - B3 SINE B2 0 216 2 6 1411 1973 158 90 3 chr11 108352781 108353137 -13490719 - ORR1B1 LTR MaLR 0 394 8 6 1411 445 339 58 0 chr11 108353810 108353984 -13489872 + MIR SINE MIR 49 232 -30 6 1411 213 196 0 0 chr11 108354016 108354072 -13489784 + (CTG)n Simple_repeat Simple_repeat 1 56 0 6 1411 1635 128 103 10 chr11 108354095 108354386 -13489470 - ORR1A3 LTR MaLR -8 318 1 6 1411 545 277 77 0 chr11 108354766 108354896 -13488960 - B1F2 SINE Alu -9 140 1 6 1411 281 73 0 0 chr11 108355662 108355703 -13488153 + B3A SINE B2 2 42 -156 6 1411 1203 228 65 15 chr11 108355704 108356335 -13487521 - L1_Rod LINE L1 -4279 1568 899 6 1411 1191 278 101 14 chr11 108356927 108357948 -13485908 - L1M2 LINE L1 -2524 3356 2277 6 1411 404 73 29 0 chr11 108357948 108358016 -13485840 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 6 1411 618 154 0 0 chr11 108358078 108358169 -13485687 - 4.5SRNA scRNA scRNA -3 91 1 6 1411 551 323 100 40 chr11 108358169 108359078 -13484778 - L1M2 LINE L1 -3566 2281 1318 6 1411 462 258 105 29 chr11 108359162 108359334 -13484522 - B4 SINE B4 -103 189 5 6 1411 213 175 0 0 chr11 108360527 108360567 -13483289 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 1411 260 315 18 27 chr11 108360654 108360765 -13483091 - PB1D7 SINE Alu -9 111 2 6 1411 1866 73 42 0 chr11 108360803 108361063 -13482793 - L1_Mus3 LINE L1 0 6638 6368 6 1411 291 258 53 11 chr11 108361327 108361421 -13482435 - B1F SINE Alu -24 125 28 6 1411 271 276 6 30 chr11 108361566 108361734 -13482122 + (TATATG)n Simple_repeat Simple_repeat 1 164 0 6 1411 377 324 0 0 chr11 108361766 108361871 -13481985 - B4A SINE B4 -12 280 176 6 1411 584 309 6 20 chr11 108361978 108362151 -13481705 - ORR1E LTR MaLR -207 167 6 6 1411 1874 294 99 47 chr11 108362145 108363413 -13480443 - MTE-int LTR MaLR -42 1538 61 6 1411 291 272 29 10 chr11 108363454 108363558 -13480298 - MTEa LTR MaLR 0 359 259 6 1411 23 68 0 0 chr11 108364515 108364559 -13479297 + AT_rich Low_complexity Low_complexity 1 44 0 6 1411 263 326 35 0 chr11 108365787 108365873 -13477983 + 5S rRNA rRNA 1 89 -32 6 1411 490 43 0 0 chr11 108366257 108366326 -13477530 + L1Md_F2 LINE L1 6500 6568 -14 6 1411 393 22 0 0 chr11 108366328 108366374 -13477482 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1411 744 208 62 17 chr11 108367008 108367184 -13476672 + B2_Mm2 SINE B2 2 185 -10 6 1411 1174 103 4 66 chr11 108369795 108370023 -13473833 - L1_Mus4 LINE L1 -1 6635 6422 6 1411 22 35 0 0 chr11 108370432 108370461 -13473395 + AT_rich Low_complexity Low_complexity 1 29 0 6 1411 357 303 66 88 chr11 108370645 108370826 -13473030 - MTEb LTR MaLR 0 379 203 6 1411 338 283 9 28 chr11 108370877 108370986 -13472870 - MTEb LTR MaLR -263 107 1 6 1411 21 0 0 0 chr11 108371880 108371901 -13471955 + AT_rich Low_complexity Low_complexity 1 21 0 6 1411 309 267 54 22 chr11 108371939 108372031 -13471825 + MTD LTR MaLR 1 95 -326 6 1411 1022 256 127 5 chr11 108372044 108372374 -13471482 + MTD LTR MaLR 55 405 -14 6 1411 1468 217 142 3 chr11 108372521 108372858 -13470998 + MTD LTR MaLR 2 385 -34 6 1411 436 306 17 40 chr11 108373166 108373343 -13470513 + CT-rich Low_complexity Low_complexity 1 173 0 6 1411 211 262 32 116 chr11 108373343 108373438 -13470418 - PB1D7 SINE Alu 0 120 34 6 1411 671 263 85 11 chr11 108373958 108374146 -13469710 + B3 SINE B2 1 202 -14 6 1411 280 94 19 19 chr11 108374149 108374203 -13469653 + (CATA)n Simple_repeat Simple_repeat 2 55 0 6 1411 279 0 0 0 chr11 108374644 108374675 -13469181 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1411 650 331 72 32 chr11 108375049 108375449 -13468407 - MLT1C LTR MaLR -4 463 48 6 1411 377 272 0 0 chr11 108375440 108375519 -13468337 + ID4 SINE ID 12 90 -62 6 1411 219 297 19 38 chr11 108376188 108376293 -13467563 + CT-rich Low_complexity Low_complexity 3 105 0 6 1411 1161 293 186 25 chr11 108376573 108377241 -13466615 - Lx8 LINE L1 -510 6963 6189 6 1411 258 258 15 0 chr11 108377561 108377627 -13466229 - L1M3 LINE L1 -633 5550 5484 6 1411 1166 48 7 0 chr11 108377754 108377900 -13465956 + B1_Mus2 SINE Alu 1 147 0 6 1411 905 143 29 0 chr11 108379697 108379837 -13464019 + B1_Mur4 SINE Alu 3 146 -4 6 1411 22 0 0 0 chr11 108380408 108380430 -13463426 + AT_rich Low_complexity Low_complexity 1 22 0 6 1411 28 0 0 0 chr11 108380866 108380894 -13462962 + AT_rich Low_complexity Low_complexity 1 28 0 6 1411 29 0 0 0 chr11 108381520 108381549 -13462307 + AT_rich Low_complexity Low_complexity 1 29 0 6 1411 312 312 18 0 chr11 108381702 108381811 -13462045 + Lx8 LINE L1 6792 6902 -571 6 1411 6425 3 0 0 chr11 108382166 108382914 -13460942 + L1Md_A LINE L1 4839 5586 -297 6 1411 9027 5 0 0 chr11 108382914 108383910 -13459946 + L1Md_A LINE L1 5587 6582 0 6 1411 39 38 0 0 chr11 108383970 108384023 -13459833 + AT_rich Low_complexity Low_complexity 1 53 0 6 1411 1184 75 0 0 chr11 108385250 108385397 -13458459 - B1_Mus1 SINE Alu -1 147 1 6 1411 22 35 0 0 chr11 108385754 108385783 -13458073 + AT_rich Low_complexity Low_complexity 1 29 0 6 1411 1130 77 0 7 chr11 108385788 108385931 -13457925 - B1_Mus1 SINE Alu -6 142 1 6 1411 677 45 11 0 chr11 108386107 108386196 -13457660 + (GA)n Simple_repeat Simple_repeat 1 90 0 6 1411 22 35 0 0 chr11 108389838 108389867 -13453989 + AT_rich Low_complexity Low_complexity 1 29 0 6 1411 21 36 0 0 chr11 108390360 108390388 -13453468 + AT_rich Low_complexity Low_complexity 1 28 0 6 1411 21 57 0 0 chr11 108390435 108390470 -13453386 + AT_rich Low_complexity Low_complexity 1 35 0 6 1411 306 73 0 0 chr11 108391912 108391953 -13451903 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1411 784 283 19 0 chr11 108392837 108393049 -13450807 + B3 SINE B2 1 216 0 6 1411 536 261 243 45 chr11 108395277 108395590 -13448266 - MTEa LTR MaLR -2 377 3 6 176 35916 64 2 8 chr11 108395724 108401912 -13441944 - L1Md_F3 LINE L1 0 6584 441 6 1412 234 279 11 11 chr11 108402599 108402686 -13441170 + L1ME3A LINE L1 5855 5941 -232 6 1412 5349 67 19 0 chr11 108402957 108403656 -13440200 - L1_Mus3 LINE L1 -12 6626 5915 6 1412 1912 268 60 30 chr11 108404652 108405303 -13438553 - Lx5 LINE L1 -15 7035 6455 6 1412 263 246 0 0 chr11 108405326 108405383 -13438473 - Lx5 LINE L1 -1287 6173 6117 6 1412 301 355 108 40 chr11 108405806 108406326 -13437530 - L1M5 LINE L1 -1452 4694 4140 6 1412 215 156 22 0 chr11 108406449 108406494 -13437362 + T-rich Low_complexity Low_complexity 6 51 0 6 1412 239 290 45 27 chr11 108407104 108407214 -13436642 - L1MD LINE L1 -841 5305 5194 6 1412 1233 275 55 24 chr11 108408862 108409242 -13434614 - Tigger10 DNA Tigger -2 1841 1450 6 1412 180 0 0 0 chr11 108409814 108409834 -13434022 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1412 253 269 30 0 chr11 108410778 108410845 -13433011 + B4A SINE B4 33 101 -191 6 1412 360 179 107 180 chr11 108411197 108411347 -13432509 - B1_Mus2 SINE Alu 0 147 9 6 1412 744 188 111 65 chr11 108411419 108411618 -13432238 - B3 SINE B2 -6 210 3 7 1412 967 307 82 7 chr11 108411697 108412149 -13431707 - L1MB5 LINE L1 -67 6107 5622 7 1412 450 36 0 0 chr11 108412552 108412608 -13431248 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1412 240 316 103 26 chr11 108412768 108412924 -13430932 + Tigger8 DNA MER2_type 215 382 -284 7 1412 291 162 0 0 chr11 108412948 108413028 -13430828 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 7 1412 269 25 0 0 chr11 108413559 108413627 -13430229 - L1Md_T LINE L1 0 6582 6543 7 1412 228 356 33 0 chr11 108415038 108415128 -13428728 - MIRc SINE MIR -143 125 33 7 1412 212 163 0 0 chr11 108415177 108415220 -13428636 + T-rich Low_complexity Low_complexity 1 43 0 7 1412 377 293 43 57 chr11 108415230 108415371 -13428485 - B1F2 SINE Alu -2 147 9 7 1412 649 257 170 30 chr11 108415743 108416008 -13427848 - MTEb LTR MaLR 0 379 78 7 1412 266 247 127 17 chr11 108417116 108417297 -13426559 - L1M4 LINE L1 -3374 2772 2572 7 1412 284 232 173 40 chr11 108417446 108417648 -13426208 - L1MEc LINE L1 -3775 2544 2316 7 1412 472 312 113 24 chr11 108417968 108418428 -13425428 - L1MEc LINE L1 -4251 2149 1649 7 1412 215 61 30 0 chr11 108418433 108418466 -13425390 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 1412 3247 164 73 11 chr11 108418509 108419156 -13424700 - Lx3C LINE L1 -5 6971 6285 7 1412 1769 141 65 96 chr11 108419156 108419603 -13424253 + Lx3C LINE L1 5843 6275 -701 7 1412 329 332 118 4 chr11 108419685 108419939 -13423917 - L1MEc LINE L1 -4917 1483 1201 7 1412 24 32 0 0 chr11 108420561 108420592 -13423264 + AT_rich Low_complexity Low_complexity 1 31 0 7 1412 700 286 26 90 chr11 108421615 108421926 -13421930 - B4A SINE B4 0 292 2 7 1412 21 71 0 0 chr11 108422662 108422704 -13421152 + AT_rich Low_complexity Low_complexity 1 42 0 7 1412 383 339 23 6 chr11 108422850 108423022 -13420834 - MLT1D LTR MaLR -2 503 329 7 1412 623 253 66 71 chr11 108424351 108424547 -13419309 - B3A SINE B2 -3 195 1 7 1412 5731 193 27 15 chr11 108424854 108427025 -13416831 - Lx5 LINE L1 -11 7047 4795 7 1412 2095 181 88 26 chr11 108427035 108427918 -13415938 - Lx5 LINE L1 -4054 1826 892 7 1412 333 0 0 0 chr11 108428678 108428715 -13415141 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 7 1412 693 249 124 18 chr11 108429205 108429422 -13414434 + B4 SINE B4 1 240 -52 7 1412 206 118 0 0 chr11 108430138 108430172 -13413684 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 7 1412 503 16 16 0 chr11 108430307 108430371 -13413485 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1412 236 304 92 73 chr11 108430404 108430610 -13413246 + MIR SINE MIR 1 210 -58 7 1412 403 346 73 21 chr11 108430897 108431089 -13412767 - L1MB5 LINE L1 -90 6084 5883 7 1412 330 132 0 0 chr11 108431105 108431158 -13412698 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1412 256 217 0 0 chr11 108431207 108431253 -13412603 - L1_Mm LINE L1 -106 5777 5732 7 1412 25 0 0 0 chr11 108431471 108431496 -13412360 + AT_rich Low_complexity Low_complexity 1 25 0 7 1412 240 186 51 0 chr11 108431497 108431556 -13412300 - Lx9 LINE L1 -7 7637 7576 7 1412 341 222 0 0 chr11 108431789 108431876 -13411980 + B3A SINE B2 1 87 -129 7 1412 406 181 24 12 chr11 108431966 108432050 -13411806 + B1_Mur1 SINE Alu 64 148 -1 7 1412 1183 55 7 0 chr11 108432251 108432397 -13411459 - B1_Mus1 SINE Alu 0 148 2 7 1412 2124 201 7 9 chr11 108432601 108433023 -13410833 - MTC LTR MaLR 0 421 1 7 1412 204 217 0 0 chr11 108433415 108433461 -13410395 + A-rich Low_complexity Low_complexity 4 49 0 7 1412 432 216 0 0 chr11 108433801 108433898 -13409958 + (TATATG)n Simple_repeat Simple_repeat 1 97 0 7 1412 210 224 0 0 chr11 108434071 108434120 -13409736 + (CATA)n Simple_repeat Simple_repeat 1 49 0 7 1412 32482 97 14 11 chr11 108434277 108440302 -13403554 + L1_Mus1 LINE L1 535 6567 0 7 1412 201 94 0 0 chr11 108440347 108440379 -13403477 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1412 21 0 0 0 chr11 108440379 108440400 -13403456 + AT_rich Low_complexity Low_complexity 1 21 0 7 1412 676 296 12 70 chr11 108440441 108440684 -13403172 + B4A SINE B4 3 231 -61 7 1412 637 276 85 10 chr11 108440686 108440887 -13402969 + B3 SINE B2 1 216 0 7 1412 714 209 21 7 chr11 108441264 108441404 -13402452 + B1_Mur2 SINE Alu 1 142 -7 7 1412 270 129 32 16 chr11 108441421 108441484 -13402372 + GA-rich Low_complexity Low_complexity 1 64 0 7 1412 441 0 0 0 chr11 108441584 108441633 -13402223 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1412 417 265 57 25 chr11 108442870 108443114 -13400742 + L1MD1 LINE L1 5143 5394 -752 7 1412 450 321 126 21 chr11 108443135 108443539 -13400317 + L1MD1 LINE L1 5457 5913 -266 7 1412 328 291 60 30 chr11 108443765 108443999 -13399857 + L1M4 LINE L1 2693 2933 -3213 7 1412 408 277 142 40 chr11 108444012 108444679 -13399177 - L1M2 LINE L1 -1684 4459 3646 7 1412 405 39 0 0 chr11 108444679 108444730 -13399126 + (TATG)n Simple_repeat Simple_repeat 4 54 0 7 1412 362 288 196 34 chr11 108444730 108444777 -13399079 - L1M2 LINE L1 -2235 3645 3599 7 1412 564 240 71 38 chr11 108444851 108445063 -13398793 - Lx9 LINE L1 -7 7637 7419 7 1412 1713 279 152 30 chr11 108445121 108445911 -13397945 - Lx8 LINE L1 -19 7454 6569 7 1412 489 323 59 26 chr11 108446802 108447075 -13396781 - B4A SINE B4 -8 284 3 7 1412 1336 242 45 36 chr11 108447536 108447866 -13395990 - MTEa LTR MaLR -46 333 1 7 1412 5956 104 14 6 chr11 108448567 108449435 -13394421 - Lx LINE L1 -2 6652 5778 7 1412 1915 268 113 37 chr11 108449900 108451890 -13391966 - L1MA7 LINE L1 -216 6075 3926 7 1412 323 198 102 4 chr11 108451904 108451995 -13391861 + B1F1 SINE Alu 14 116 -11 7 1412 22 0 0 0 chr11 108452286 108452308 -13391548 + AT_rich Low_complexity Low_complexity 1 22 0 7 1412 34 65 0 0 chr11 108453850 108453912 -13389944 + AT_rich Low_complexity Low_complexity 1 62 0 7 1412 278 303 0 0 chr11 108454058 108454134 -13389722 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 1412 313 343 67 22 chr11 108454854 108455033 -13388823 + Charlie16a DNA MER1_type 144 330 -12 7 1412 868 96 7 7 chr11 108455777 108455924 -13387932 + (GA)n Simple_repeat Simple_repeat 2 148 0 7 1412 461 231 10 0 chr11 108456426 108456530 -13387326 - BC1_Mm scRNA scRNA -45 107 3 7 1412 206 370 126 17 chr11 108457278 108457509 -13386347 - L2 LINE L2 -421 2998 2743 7 1412 2930 98 42 7 chr11 108457534 108457967 -13385889 + L1_Mus3 LINE L1 6175 6622 -16 7 1412 668 52 10 0 chr11 108457968 108458065 -13385791 + (GA)n Simple_repeat Simple_repeat 2 99 0 7 1412 1804 212 101 13 chr11 108458074 108458452 -13385404 - MTD LTR MaLR -8 411 1 7 1412 485 334 154 26 chr11 108458617 108459149 -13384707 - L2 LINE L2 -1157 2262 1663 7 1412 942 248 92 26 chr11 108459310 108459583 -13384273 - B4 SINE B4 0 292 2 7 1412 623 242 83 0 chr11 108460565 108460722 -13383134 - B4 SINE B4 -82 210 41 7 1412 321 318 58 19 chr11 108461111 108461265 -13382591 + RMER15 LTR ERVL 411 570 -5 7 1412 365 268 197 0 chr11 108461923 108462050 -13381806 + RSINE1 SINE B4 9 160 -5 7 1412 342 0 0 0 chr11 108462369 108462407 -13381449 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1412 639 39 0 0 chr11 108462546 108462624 -13381232 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 7 1412 341 288 85 12 chr11 108462998 108463163 -13380693 - HAL1b LINE L1 -191 1818 1642 7 1412 432 0 0 0 chr11 108463314 108463362 -13380494 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 7 1412 306 73 0 0 chr11 108463362 108463403 -13380453 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 7 1412 504 362 61 68 chr11 108464877 108465306 -13378550 - Lx8 LINE L1 -405 7068 6643 7 1412 297 75 0 0 chr11 108465329 108465369 -13378487 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1412 23 78 0 0 chr11 108466246 108466297 -13377559 + AT_rich Low_complexity Low_complexity 1 51 0 7 1412 504 0 0 0 chr11 108468233 108468289 -13375567 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1412 24 32 0 0 chr11 108470666 108470697 -13373159 + AT_rich Low_complexity Low_complexity 1 31 0 7 1412 244 352 48 0 chr11 108471744 108471849 -13372007 - L4 LINE RTE -186 1843 1734 7 1412 8259 100 77 2 chr11 108473931 108475313 -13368543 - Lx2 LINE L1 0 6997 5515 7 1412 318 109 0 0 chr11 108475310 108475365 -13368491 + L1_Mm LINE L1 3946 4000 -1883 7 1412 281 284 0 25 chr11 108477139 108477258 -13366598 - Lx8 LINE L1 0 7473 7358 7 1412 489 200 22 7 chr11 108477258 108477394 -13366462 + (TATG)n Simple_repeat Simple_repeat 4 141 0 7 1412 1987 255 136 34 chr11 108477430 108477476 -13366380 - Lx8 LINE L1 -148 7325 7290 7 1412 216 0 0 0 chr11 108477476 108477500 -13366356 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1412 1110 90 0 0 chr11 108477500 108477645 -13366211 - B1_Mus2 SINE Alu -2 145 1 7 1412 1987 255 136 34 chr11 108477645 108478368 -13365488 - Lx8 LINE L1 -184 7289 6477 7 1412 5361 35 0 0 chr11 108480480 108481110 -13362746 + L1Md_T LINE L1 5953 6582 0 7 1412 1609 43 9 5 chr11 108481123 108481333 -13362523 + L1Md_F3 LINE L1 6373 6583 -1 7 1412 304 0 0 0 chr11 108483265 108483300 -13360556 - U2 snRNA snRNA -153 35 1 7 1412 243 0 0 0 chr11 108486570 108486597 -13357259 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1412 182 37 37 0 chr11 108486803 108486830 -13357026 + (TTG)n Simple_repeat Simple_repeat 2 29 0 7 1412 995 201 19 5 chr11 108487247 108487452 -13356404 - B3 SINE B2 0 216 9 7 1412 428 188 12 12 chr11 108487992 108488078 -13355778 + B1_Mur1 SINE Alu 43 128 -21 7 1412 1350 234 75 23 chr11 108488438 108488836 -13355020 - MTD LTR MaLR 0 419 1 7 1412 2118 142 91 16 chr11 108488954 108489340 -13354516 + RMER6A LTR ERVK 342 756 0 7 1412 421 292 67 0 chr11 108490067 108490187 -13353669 - RSINE1 SINE B4 -26 139 12 7 1412 715 201 32 0 chr11 108490453 108490607 -13353249 - Lx8 LINE L1 -238 7235 7077 7 1412 1446 280 136 19 chr11 108490617 108491255 -13352601 - Lx8 LINE L1 -546 6927 6215 7 1412 28 71 0 0 chr11 108491267 108491323 -13352533 + AT_rich Low_complexity Low_complexity 1 56 0 7 1412 193 213 17 29 chr11 108491332 108491506 -13352350 + (TA)n Simple_repeat Simple_repeat 1 172 0 7 1412 252 0 0 0 chr11 108491586 108491614 -13352242 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1412 806 249 43 74 chr11 108492041 108492340 -13351516 - B4A SINE B4 0 292 3 8 1412 640 307 91 40 chr11 108492520 108492795 -13351061 - MLT1D LTR MaLR 0 505 217 8 1412 428 296 17 0 chr11 108492865 108492980 -13350876 - B1_Mur4 SINE Alu 0 150 34 8 1412 929 209 71 5 chr11 108493198 108493409 -13350447 - URR1B DNA MER1_type 0 225 1 8 1412 2255 42 14 20 chr11 108493484 108493583 -13350273 + L1Md_F3 LINE L1 6292 6390 -194 8 1412 3469 25 2 0 chr11 108493583 108493978 -13349878 - MTA_Mm LTR MaLR 0 396 1 8 1412 2255 42 14 20 chr11 108493978 108494170 -13349686 + L1Md_F3 LINE L1 6391 6581 -3 8 1412 2770 65 14 5 chr11 108494189 108494560 -13349296 + L1_Mus3 LINE L1 6265 6638 0 8 1412 808 279 40 65 chr11 108495128 108495603 -13348253 - L1MA9 LINE L1 -14 6298 5836 8 1412 237 205 289 18 chr11 108495658 108495772 -13348084 - L1MA9 LINE L1 -442 5747 5603 8 1412 315 320 116 8 chr11 108495816 108495945 -13347911 - RSINE1 SINE B4 -15 150 8 8 1412 535 208 121 49 chr11 108495950 108496272 -13347584 - L1MA9 LINE L1 -872 5440 5090 8 1412 21 0 0 0 chr11 108496282 108496303 -13347553 + AT_rich Low_complexity Low_complexity 1 21 0 8 1412 549 302 0 16 chr11 108496458 108496586 -13347270 + RSINE1 SINE B4 40 165 0 8 1412 867 178 0 7 chr11 108498056 108498203 -13345653 - B1_Mus2 SINE Alu 0 147 2 8 1412 207 359 0 0 chr11 108501893 108501957 -13341899 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1412 214 161 53 18 chr11 108502232 108502242 -13341614 + (CAGA)n Simple_repeat Simple_repeat 2 11 0 2 1412 1180 68 0 0 chr11 108502242 108502390 -13341466 + B1_Mus1 SINE Alu 1 148 0 3 1412 214 161 53 18 chr11 108502390 108502436 -13341420 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 4 1412 322 177 0 0 chr11 108503247 108503309 -13340547 + Lx7 LINE L1 3843 3904 -1976 5 1412 899 290 92 123 chr11 108503322 108503783 -13340073 + RLTR18 LTR ERVK 10 460 -156 6 1412 873 9 0 0 chr11 108503783 108503891 -13339965 + L1_Mus1 LINE L1 6460 6567 0 7 1412 899 290 92 123 chr11 108503891 108504038 -13339818 + RLTR18 LTR ERVK 461 599 -17 6 1412 3286 248 47 34 chr11 108504041 108505464 -13338392 + Lx7 LINE L1 4743 6183 -1513 5 1412 812 315 127 12 chr11 108505481 108506047 -13337809 + Lx7 LINE L1 6690 7320 -376 5 1412 21 71 0 0 chr11 108506595 108506637 -13337219 + AT_rich Low_complexity Low_complexity 1 42 0 8 1412 181 261 14 97 chr11 108507823 108507895 -13335961 - L3 LINE CR1 -191 4298 4233 9 1412 237 271 113 14 chr11 108508048 108508119 -13335737 - Tigger7 DNA MER2_type -2409 82 5 1 1412 750 317 69 13 chr11 108508226 108508846 -13335010 - L1MA4A LINE L1 -404 5899 5188 1 1412 286 271 0 48 chr11 108509227 108509289 -13334567 - B1F1 SINE Alu -88 61 3 1 1412 328 288 0 0 chr11 108509295 108509375 -13334481 - PB1D10 SINE Alu -3 114 35 1 1412 22 35 0 0 chr11 108509571 108509600 -13334256 + AT_rich Low_complexity Low_complexity 1 29 0 1 1412 543 43 0 0 chr11 108510007 108510077 -13333779 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1412 833 299 115 8 chr11 108510096 108510356 -13333500 - B4A SINE B4 -4 288 1 1 1412 217 186 34 0 chr11 108510545 108510604 -13333252 + T-rich Low_complexity Low_complexity 6 66 0 1 1412 692 189 42 7 chr11 108510692 108510836 -13333020 - B1_Mur3 SINE Alu 0 149 1 1 1412 316 370 84 16 chr11 108510901 108511209 -13332647 - L1M4 LINE L1 -2368 3778 3450 1 1412 2989 16 0 89 chr11 108511213 108511616 -13332240 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1412 8043 67 80 43 chr11 108511616 108512875 -13330981 + IAPEz-int LTR ERVK 8 1313 -5168 2 1412 27703 18 1 2 chr11 108512874 108516149 -13327707 + IAPEz-int LTR ERVK 3210 6481 0 2 1412 2989 16 0 89 chr11 108516149 108516552 -13327304 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1412 459 141 0 0 chr11 108517603 108517681 -13326175 + (CGTG)n Simple_repeat Simple_repeat 2 79 0 2 1412 239 256 108 14 chr11 108517743 108517882 -13325974 - L1MD LINE L1 -1121 5025 4874 2 1412 186 71 0 0 chr11 108518257 108518285 -13325571 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1412 270 0 0 0 chr11 108518748 108518778 -13325078 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1412 622 226 134 0 chr11 108519256 108519442 -13324414 - B3 SINE B2 -5 211 1 2 1412 3166 241 66 11 chr11 108520652 108521595 -13322261 - Lx2B LINE L1 -5 6995 6001 2 1412 360 0 0 0 chr11 108521595 108521635 -13322221 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1412 297 0 0 0 chr11 108521635 108521668 -13322188 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1412 1109 271 108 10 chr11 108521675 108522063 -13321793 - Lx8 LINE L1 -40 7433 7008 2 1412 276 130 0 0 chr11 108522108 108522154 -13321702 + (TCC)n Simple_repeat Simple_repeat 3 48 0 3 1412 539 297 25 19 chr11 108522184 108522345 -13321511 - RSINE1 SINE B4 -1 164 3 3 1412 24 53 0 0 chr11 108522558 108522596 -13321260 + AT_rich Low_complexity Low_complexity 1 38 0 3 1412 398 341 11 6 chr11 108522620 108522794 -13321062 + L1M2 LINE L1 4636 4810 -1333 3 1412 531 322 7 0 chr11 108523192 108523335 -13320521 + ID_B1 SINE B4 81 224 0 3 1412 391 282 115 72 chr11 108523904 108524225 -13319631 + L1MEe LINE L1 677 1011 -3843 3 1412 505 322 27 106 chr11 108524735 108524964 -13318892 + MLT1C LTR MaLR 193 407 -60 3 1412 859 230 25 20 chr11 108524964 108525168 -13318688 - B3 SINE B2 -11 205 1 3 1412 505 322 27 106 chr11 108525168 108525230 -13318626 + MLT1C LTR MaLR 408 461 -6 3 1412 303 335 149 44 chr11 108526884 108527402 -13316454 - L2 LINE L2 -364 3055 2484 3 1413 496 324 86 51 chr11 108530311 108530568 -13313288 + B4A SINE B4 17 282 -10 3 1413 228 269 0 0 chr11 108532558 108532610 -13311246 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 4 1413 505 342 70 15 chr11 108532644 108532917 -13310939 - B4A SINE B4 -4 288 1 4 1413 1849 219 19 81 chr11 108533277 108533358 -13310498 + L1_Mur3 LINE L1 4298 4372 -1508 4 1413 1139 76 0 0 chr11 108533358 108533503 -13310353 + B1_Mus2 SINE Alu 2 146 -1 4 1413 1849 219 19 81 chr11 108533503 108533772 -13310084 + L1_Mur3 LINE L1 4373 4624 -1256 4 1413 333 0 0 0 chr11 108533772 108533809 -13310047 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1413 1849 219 19 81 chr11 108533809 108534021 -13309835 + L1_Mur3 LINE L1 4625 4821 -1059 4 1413 414 0 0 0 chr11 108534021 108534067 -13309789 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 4 1413 1849 219 19 81 chr11 108534067 108534169 -13309687 + L1_Mur3 LINE L1 4822 4923 -957 4 1413 1336 69 21 16 chr11 108534171 108534362 -13309494 + B2_Mm2 SINE B2 2 193 -2 4 1413 24622 133 32 12 chr11 108534378 108539451 -13304405 + L1Md_F2 LINE L1 407 5586 -297 4 1413 8069 43 5 4 chr11 108539453 108540445 -13303411 + L1Md_F2 LINE L1 5589 6581 -1 4 1413 3835 72 21 0 chr11 108540470 108541001 -13302855 + L1_Mus3 LINE L1 5783 6324 -314 4 1413 342 262 9 36 chr11 108540998 108541109 -13302747 + L1_Mur3 LINE L1 5140 5247 -633 4 1413 428 291 60 0 chr11 108541292 108541409 -13302447 + ID_B1 SINE B4 78 201 -23 4 1413 225 0 0 0 chr11 108541423 108541448 -13302408 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1413 1877 77 4 0 chr11 108541946 108542194 -13301662 + L1_Mus2 LINE L1 6318 6566 0 5 1413 234 250 83 0 chr11 108542314 108542386 -13301470 + L1_Mm LINE L1 3780 3857 -2026 5 1413 456 19 0 0 chr11 108542855 108542908 -13300948 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1413 429 36 0 0 chr11 108542908 108542962 -13300894 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1413 293 309 281 28 chr11 108543216 108543569 -13300287 - L2 LINE L2 -349 3070 2629 5 1413 37 52 0 0 chr11 108544612 108544670 -13299186 + AT_rich Low_complexity Low_complexity 1 58 0 5 1413 688 270 173 8 chr11 108544712 108545082 -13298774 - L1MB3 LINE L1 -74 6109 5679 5 1413 2429 129 60 31 chr11 108545222 108545670 -13298186 - RMER4A LTR ERVK 0 466 6 5 1413 2298 142 10 2 chr11 108545683 108546078 -13297778 - MurERV4-int LTR ERVK 0 5260 4863 5 1413 8741 175 34 17 chr11 108546068 108547534 -13296322 - MurERV4-int LTR ERVK -3489 1771 287 5 1413 234 0 0 0 chr11 108547534 108547560 -13296296 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1413 8741 175 34 17 chr11 108547560 108547835 -13296021 - MurERV4-int LTR ERVK -4974 286 2 5 1413 1770 142 202 20 chr11 108547835 108548223 -13295633 - RMER4A LTR ERVK 0 466 8 5 1413 8810 52 1 0 chr11 108549502 108551374 -13292482 - L1Md_F2 LINE L1 -8 6574 4701 6 1413 348 127 0 0 chr11 108551549 108551604 -13292252 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 6 1413 446 273 91 21 chr11 108551624 108551811 -13292045 - Lx7 LINE L1 -370 7326 7127 6 1413 2310 30 0 0 chr11 108551849 108552118 -13291738 - L1Md_A LINE L1 -2 6580 6312 6 1413 839 109 72 7 chr11 108552157 108552296 -13291560 - B1_Mus1 SINE Alu 0 148 1 6 1413 874 262 171 13 chr11 108552377 108552686 -13291170 + MTEb LTR MaLR 20 377 -2 6 1413 824 182 0 0 chr11 108552716 108552848 -13291008 + B1_Mus1 SINE Alu 1 132 -16 6 1413 315 0 0 0 chr11 108552856 108552891 -13290965 + (CATA)n Simple_repeat Simple_repeat 4 38 0 6 1413 37 62 0 0 chr11 108552985 108553050 -13290806 + AT_rich Low_complexity Low_complexity 1 65 0 6 1413 23 33 0 0 chr11 108553212 108553242 -13290614 + AT_rich Low_complexity Low_complexity 1 30 0 6 1413 369 0 0 0 chr11 108553427 108553468 -13290388 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1413 279 0 0 0 chr11 108553468 108553498 -13290358 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 1413 7411 64 6 1 chr11 108553935 108555499 -13288357 - L1Md_F2 LINE L1 -3 6579 5009 7 1413 326 218 160 4 chr11 108556232 108556361 -13287495 - L1MC4a LINE L1 -26 7856 7713 7 1413 806 315 81 39 chr11 108556379 108556739 -13287117 - MTEa LTR MaLR -2 377 3 7 1413 389 316 6 56 chr11 108556747 108556908 -13286948 - MTEa-int LTR MaLR -6 1574 1422 7 1413 762 238 83 0 chr11 108556919 108557087 -13286769 + B3A SINE B2 1 182 -16 7 1413 378 276 72 39 chr11 108557121 108557302 -13286554 - MTEa-int LTR MaLR -154 1426 1240 7 1413 1109 301 146 4 chr11 108558154 108558621 -13285235 - MTEa-int LTR MaLR -371 1209 677 7 1413 534 16 0 0 chr11 108558624 108558687 -13285169 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1413 1291 54 0 0 chr11 108558691 108558838 -13285018 - B1_Mus1 SINE Alu 0 148 2 7 1413 227 146 0 18 chr11 108559059 108559115 -13284741 + (CCTA)n Simple_repeat Simple_repeat 1 55 0 7 1413 482 248 92 46 chr11 108559257 108559388 -13284468 + RSINE1 SINE B4 4 140 -25 7 1413 330 247 31 10 chr11 108559412 108559510 -13284346 + (CA)n Simple_repeat Simple_repeat 2 101 0 8 1413 25 31 0 0 chr11 108560229 108560261 -13283595 + AT_rich Low_complexity Low_complexity 1 32 0 8 1413 213 132 0 0 chr11 108560365 108560403 -13283453 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1413 285 289 120 21 chr11 108560471 108560662 -13283194 + L1M5 LINE L1 4975 5184 -962 8 1413 363 275 9 9 chr11 108560875 108560985 -13282871 - Tigger6b DNA MER2_type -1474 123 14 8 1413 3662 95 10 6 chr11 108562513 108563409 -13280447 + L1VL4 LINE L1 465 1363 -2196 8 1413 31099 117 10 24 chr11 108563423 108569756 -13274100 + L1_Mus4 LINE L1 452 6629 -7 8 1413 22 0 0 0 chr11 108569887 108569909 -13273947 + AT_rich Low_complexity Low_complexity 1 22 0 8 1413 448 336 206 30 chr11 108570825 108571402 -13272454 + L2 LINE L2 929 1607 -1812 8 1413 443 314 38 32 chr11 108571588 108571746 -13272110 + RSINE1 SINE B4 3 161 -4 8 1413 35 24 0 0 chr11 108571764 108571806 -13272050 + AT_rich Low_complexity Low_complexity 1 42 0 9 1413 299 297 35 88 chr11 108572562 108572732 -13271124 + L2 LINE L2 2279 2439 -980 8 1413 291 200 18 0 chr11 108572771 108572826 -13271030 - PB1D9 SINE Alu -48 72 17 9 1413 557 331 106 32 chr11 108572827 108573289 -13270567 + L2 LINE L2 2585 3080 -339 8 1413 2725 157 5 1 chr11 108574694 108575111 -13268745 - Lx5 LINE L1 -562 6898 6486 9 1413 432 67 0 0 chr11 108575117 108575177 -13268679 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1413 920 285 85 12 chr11 108575186 108575445 -13268411 - B4 SINE B4 -10 282 5 9 1413 710 260 93 28 chr11 108575477 108575659 -13268197 - ID_B1 SINE B4 -29 195 2 9 1413 192 97 0 0 chr11 108575714 108575745 -13268111 + (TA)n Simple_repeat Simple_repeat 2 32 0 9 1413 293 208 64 13 chr11 108576049 108576127 -13267729 + ID4 SINE ID 2 83 0 9 1413 482 253 0 0 chr11 108576909 108577000 -13266856 + B1F1 SINE Alu 4 94 -55 9 1413 407 235 25 8 chr11 108577631 108577751 -13266105 + L1MB7 LINE L1 842 963 -5579 9 1413 325 343 28 47 chr11 108578273 108578487 -13265369 + L1MB7 LINE L1 940 1149 -5393 9 1413 226 293 48 48 chr11 108578573 108578677 -13265179 + ID_B1 SINE B4 81 184 -40 1 1413 332 226 68 97 chr11 108578643 108578746 -13265110 + PB1 SINE Alu 23 122 -5 1 1413 228 362 25 0 chr11 108578838 108578861 -13264995 + ID SINE ID 3 83 -140 1 1413 259 286 18 0 chr11 108578861 108578917 -13264939 + ID4 SINE ID 26 82 -1 1 1413 280 343 93 22 chr11 108579060 108579373 -13264483 + L1MB7 LINE L1 5517 5851 -793 9 1413 1088 285 100 24 chr11 108579521 108580071 -13263785 + L1MB7 LINE L1 6005 6596 -86 9 1413 2697 4 0 0 chr11 108580760 108581041 -13262815 + L1Md_A LINE L1 6302 6582 0 1 1413 666 197 126 11 chr11 108582246 108582436 -13261420 + B3 SINE B2 4 215 -1 1 1413 313 205 51 0 chr11 108584923 108585001 -13258855 + B3 SINE B2 135 216 0 1 1413 287 109 87 0 chr11 108585014 108585060 -13258796 + B1_Mur2 SINE Alu 99 148 -1 1 1413 201 39 0 0 chr11 108585077 108585103 -13258753 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1413 3796 86 2 12 chr11 108585111 108585605 -13258251 + Lx LINE L1 6165 6653 -1 1 1413 1062 231 76 86 chr11 108585678 108586061 -13257795 + MTE2a LTR MaLR 1 379 0 1 1413 352 298 177 94 chr11 108586160 108586509 -13257347 - MTEb LTR MaLR 0 379 2 1 1413 455 297 129 13 chr11 108586525 108586750 -13257106 + L1MB8 LINE L1 5767 6017 -161 1 1413 283 152 0 0 chr11 108586773 108586819 -13257037 + L1MB8 LINE L1 6084 6129 -55 1 1413 687 112 0 0 chr11 108587405 108587512 -13256344 + (TG)n Simple_repeat Simple_repeat 2 108 0 1 1413 407 298 210 93 chr11 108587554 108587802 -13256054 - B4A SINE B4 -14 278 2 1 1413 684 323 71 0 chr11 108589128 108589382 -13254474 - B4A SINE B4 -17 275 4 1 1413 23 33 0 0 chr11 108590456 108590486 -13253370 + AT_rich Low_complexity Low_complexity 1 30 0 1 1413 3349 131 97 39 chr11 108590487 108591075 -13252781 - Lx LINE L1 -27 6627 6006 1 1413 1252 244 68 3 chr11 108591289 108591581 -13252275 - Lx6 LINE L1 -26 7434 7124 1 1413 268 297 15 52 chr11 108591826 108591961 -13251895 - Charlie4z DNA MER1_type -31 136 7 1 1413 736 229 0 27 chr11 108594575 108594723 -13249133 + B1_Mur1 SINE Alu 1 144 -5 1 1413 814 310 87 37 chr11 108594895 108595688 -13248168 - L1M5 LINE L1 -2601 3545 2713 1 1413 332 327 51 28 chr11 108595692 108595909 -13247947 - L1MEg LINE L1 -3509 2637 2416 1 1413 499 299 141 34 chr11 108596305 108596568 -13247288 - B4A SINE B4 0 292 2 1 1413 339 294 39 11 chr11 108596749 108596931 -13246925 - L1MEg LINE L1 -4836 1406 1220 1 1413 1011 291 118 76 chr11 108597139 108597705 -13246151 + L1MCa LINE L1 315 904 -5847 1 1413 207 0 0 0 chr11 108598174 108598197 -13245659 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1413 8358 45 3 1 chr11 108598410 108599946 -13243910 - L1Md_F2 LINE L1 0 6582 5044 1 1413 586 233 36 73 chr11 108600217 108600387 -13243469 - B3A SINE B2 -8 185 1 1 1413 371 279 104 151 chr11 108600416 108600714 -13243142 + L1MCa LINE L1 917 1271 -5480 1 1413 242 269 63 13 chr11 108600714 108600793 -13243063 + PB1D10 SINE Alu 28 110 -7 1 1413 371 279 104 151 chr11 108600793 108601083 -13242773 + L1MCa LINE L1 1272 1620 -5131 1 1413 1513 234 132 14 chr11 108601292 108601899 -13241957 + L1MCa LINE L1 2383 3080 -3484 1 1413 677 276 42 12 chr11 108601916 108602081 -13241775 + RCHARR1 DNA MER1_type 1 170 -804 1 1413 917 273 91 30 chr11 108602157 108602486 -13241370 + RCHARR1 DNA MER1_type 148 496 -478 1 1413 283 339 62 8 chr11 108602488 108602502 -13241354 + B1_Mur4 SINE Alu 1 135 -15 1 1413 426 274 18 9 chr11 108602502 108602616 -13241240 + ID_B1 SINE B4 95 209 -15 1 1413 567 0 0 0 chr11 108602625 108602688 -13241168 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 1 1413 3620 207 27 21 chr11 108602860 108603698 -13240158 - Lx9 LINE L1 0 7644 6802 1 1413 828 270 163 18 chr11 108603702 108604143 -13239713 + L1MCa LINE L1 3882 4386 -2178 1 1413 289 300 29 48 chr11 108604461 108604566 -13239290 + MT2A LTR ERVL 344 446 -87 1 1413 227 233 16 16 chr11 108604808 108604869 -13238987 + B4 SINE B4 13 73 -219 1 1413 243 0 0 0 chr11 108605808 108605835 -13238021 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1413 1328 274 63 10 chr11 108606047 108606526 -13237330 + L1MCa LINE L1 4407 4910 -1654 1 1413 369 0 0 0 chr11 108606651 108606692 -13237164 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1413 741 172 98 0 chr11 108606694 108606816 -13237040 - B1_Mm SINE Alu -12 135 2 1 1413 244 221 117 133 chr11 108607047 108607167 -13236689 + ID_B1 SINE B4 103 220 -4 1 1413 1002 212 189 17 chr11 108607262 108607564 -13236292 - RMER10B LTR ERVL -11 387 34 1 1413 565 189 36 0 chr11 108607691 108607802 -13236054 - MTC LTR MaLR -52 369 255 1 1413 234 62 0 0 chr11 108608019 108608051 -13235805 + (GTTTG)n Simple_repeat Simple_repeat 5 36 0 1 1413 416 304 17 9 chr11 108608167 108608283 -13235573 - PB1D10 SINE Alu 0 117 1 1 1413 21 36 0 0 chr11 108608299 108608327 -13235529 + AT_rich Low_complexity Low_complexity 1 28 0 1 1413 216 271 62 53 chr11 108608712 108608825 -13235031 + L2 LINE L2 1434 1547 -1872 1 1413 324 279 156 0 chr11 108608882 108609036 -13234820 - MLT1B LTR MaLR -4 386 209 1 1413 248 268 136 23 chr11 108609125 108609213 -13234643 - MLT1B LTR MaLR -291 99 2 1 1413 660 331 121 32 chr11 108609317 108610006 -13233850 + L2 LINE L2 1825 2574 -845 1 1413 190 245 20 0 chr11 108610108 108610206 -13233650 + (TATG)n Simple_repeat Simple_repeat 1 100 0 1 1413 321 339 85 48 chr11 108610274 108610544 -13233312 - B4 SINE B4 -12 280 1 1 1413 259 359 106 19 chr11 108610590 108610911 -13232945 + L2 LINE L2 2662 3010 -409 1 1413 295 257 0 0 chr11 108611359 108611429 -13232427 + MIR SINE MIR 187 256 -6 1 1413 1366 274 107 16 chr11 108612063 108612560 -13231296 - Lx8 LINE L1 -1 7472 6931 1 1413 511 155 18 18 chr11 108612583 108612695 -13231161 + GA-rich Low_complexity Low_complexity 4 115 0 1 1413 450 0 0 0 chr11 108612771 108612821 -13231035 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1413 327 330 8 17 chr11 108612833 108612950 -13230906 + MIR SINE MIR 54 169 -93 1 1413 213 321 14 48 chr11 108613510 108613657 -13230199 + CT-rich Low_complexity Low_complexity 3 144 0 1 1413 360 0 0 0 chr11 108614210 108614250 -13229606 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1413 182 192 253 13 chr11 108614983 108615062 -13228794 - MIRc SINE MIR -135 133 36 1 1413 215 327 91 36 chr11 108615629 108615794 -13228062 + MIR SINE MIR 81 254 -8 1 1413 350 312 0 0 chr11 108617972 108618065 -13225791 - ID_B1 SINE B4 -6 218 126 1 1413 206 190 0 49 chr11 108618547 108618608 -13225248 + (TGG)n Simple_repeat Simple_repeat 1 58 0 1 1413 333 0 0 0 chr11 108619954 108619991 -13223865 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1413 454 212 60 10 chr11 108620767 108620867 -13222989 + PB1D10 SINE Alu 13 117 0 1 1413 315 0 0 0 chr11 108621014 108621049 -13222807 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1413 288 0 0 0 chr11 108621049 108621080 -13222776 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1413 33228 68 7 7 chr11 108622776 108627681 -13216175 + L1Md_F2 LINE L1 682 5586 -297 1 1413 8317 35 15 4 chr11 108627681 108628664 -13215192 + L1Md_F2 LINE L1 5587 6580 -2 1 1413 699 161 32 0 chr11 108628686 108628810 -13215046 + B1_Mur3 SINE Alu 1 128 -21 1 1413 1019 218 39 0 chr11 108628922 108629128 -13214728 - B3 SINE B2 0 216 3 1 1413 309 279 23 0 chr11 108629261 108629347 -13214509 + RSINE1 SINE B4 2 89 -76 1 1413 742 187 29 0 chr11 108631112 108631251 -13212605 - B1_Mus2 SINE Alu -4 143 1 1 1413 238 294 97 2 chr11 108632776 108632870 -13210986 - B1_Mus1 SINE Alu -43 104 1 1 1413 196 343 14 0 chr11 108633276 108633346 -13210510 + L2 LINE L2 2796 2866 -553 1 1413 1898 283 108 24 chr11 108633587 108634464 -13209392 + Charlie1 DNA MER1_type 1609 2559 -222 1 1413 642 272 43 149 chr11 108634475 108634730 -13209126 + B4A SINE B4 1 228 -64 1 1413 826 231 108 0 chr11 108634733 108634919 -13208937 + B3 SINE B2 2 207 -9 1 1413 26 74 0 0 chr11 108635157 108635211 -13208645 + AT_rich Low_complexity Low_complexity 1 54 0 1 1413 21 71 0 0 chr11 108635307 108635349 -13208507 + AT_rich Low_complexity Low_complexity 1 42 0 1 1413 664 192 115 6 chr11 108637457 108637614 -13206242 - MTD LTR MaLR -227 192 19 1 1413 563 304 30 10 chr11 108638242 108638445 -13205411 - MER58A DNA MER1_type -17 207 1 1 1413 2997 113 112 11 chr11 108639957 108640431 -13203425 - RLTR28 LTR ERVL -2 522 1 1 1413 525 276 54 14 chr11 108640501 108640648 -13203208 + RSINE1 SINE B4 2 154 -11 1 1413 22 0 0 0 chr11 108641253 108641275 -13202581 + AT_rich Low_complexity Low_complexity 1 22 0 1 1413 649 228 0 0 chr11 108642571 108642694 -13201162 - RSINE1 SINE B4 -38 127 5 1 1413 357 152 105 81 chr11 108642799 108642885 -13200971 + B1_Mur3 SINE Alu 25 112 -37 1 1413 255 266 16 0 chr11 108643595 108643659 -13200197 + CT-rich Low_complexity Low_complexity 1 65 0 1 1413 485 341 58 0 chr11 108644156 108644361 -13199495 + MIR SINE MIR 25 241 -21 1 1413 1648 180 61 37 chr11 108646616 108646991 -13196865 - ORR1C2 LTR MaLR 0 384 1 1 1413 209 321 12 0 chr11 108647327 108647411 -13196445 + L2b LINE L2 3291 3375 0 1 1413 349 278 0 9 chr11 108647787 108647896 -13195960 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1413 199 287 126 27 chr11 108651287 108651398 -13192458 - MIR SINE MIR -76 186 65 1 1413 270 295 171 0 chr11 108652438 108652567 -13191289 - LTR78 LTR ERV1 -61 1243 1093 1 1413 782 269 22 11 chr11 108653573 108653756 -13190100 + Lx8 LINE L1 6949 7179 -294 1 1413 204 40 0 0 chr11 108653756 108653781 -13190075 + (CCA)n Simple_repeat Simple_repeat 3 27 0 1 1413 782 230 67 19 chr11 108653781 108653928 -13189928 + Lx8 LINE L1 7180 7331 -142 1 1413 22 0 0 0 chr11 108654032 108654054 -13189802 + AT_rich Low_complexity Low_complexity 1 22 0 1 1413 280 303 138 0 chr11 108654248 108654400 -13189456 + LTR78 LTR ERV1 1106 1278 -26 1 1413 446 322 33 13 chr11 108654709 108654860 -13188996 + RSINE1 SINE B4 2 155 -10 1 1413 216 0 0 0 chr11 108655011 108655035 -13188821 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1413 220 200 167 0 chr11 108655216 108655276 -13188580 + PB1D10 SINE Alu 46 115 -2 1 1413 478 265 72 89 chr11 108655806 108656065 -13187791 + MTE2a LTR MaLR 18 242 -137 1 1413 448 212 0 39 chr11 108656594 108656697 -13187159 + B1F SINE Alu 42 140 -9 1 1413 462 276 31 22 chr11 108656928 108657150 -13186706 - L1MC5 LINE L1 -384 7577 7354 1 1413 180 0 0 0 chr11 108658320 108658340 -13185516 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1413 263 366 57 23 chr11 108658382 108658558 -13185298 + MLT1K LTR MaLR 20 201 -394 2 1414 238 348 21 11 chr11 108658933 108659026 -13184830 + PB1D10 SINE Alu 3 96 -21 2 1414 450 0 0 0 chr11 108659586 108659636 -13184220 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 2 1414 877 124 0 33 chr11 108660099 108660283 -13183573 + C-rich Low_complexity Low_complexity 3 180 0 2 1414 216 135 54 0 chr11 108660284 108660321 -13183535 + CT-rich Low_complexity Low_complexity 4 42 0 2 1414 517 277 33 98 chr11 108660407 108660591 -13183265 - B4A SINE B4 -119 173 2 2 1414 21 0 0 0 chr11 108660912 108660933 -13182923 + AT_rich Low_complexity Low_complexity 1 21 0 2 1414 6770 49 7 0 chr11 108662067 108662882 -13180974 + L1_Mus1 LINE L1 5747 6567 0 2 1414 2370 4 0 0 chr11 108663460 108663751 -13180105 + L1Md_A LINE L1 6324 6582 0 2 1414 191 276 10 0 chr11 108664938 108665036 -13178820 + (TG)n Simple_repeat Simple_repeat 1 99 0 2 1414 297 0 0 0 chr11 108667925 108667958 -13175898 + (TTTAG)n Simple_repeat Simple_repeat 3 35 0 2 1414 238 314 41 68 chr11 108667974 108667994 -13175862 - FAM SINE Alu -24 287 269 2 1414 1212 96 62 0 chr11 108667994 108668171 -13175685 - L1Md_F2 LINE L1 -11 6571 6384 2 1414 386 272 5 56 chr11 108668171 108668297 -13175559 - PB1D10 SINE Alu -2 115 11 2 1414 245 313 103 16 chr11 108668459 108668644 -13175212 + L2a LINE L2 2574 2774 -645 2 1414 189 314 184 39 chr11 108668787 108668966 -13174890 + L2a LINE L2 3028 3232 -194 2 1414 21 36 0 0 chr11 108669446 108669474 -13174382 + AT_rich Low_complexity Low_complexity 1 28 0 2 1414 492 218 62 26 chr11 108669676 108669789 -13174067 - PB1D10 SINE Alu 0 117 1 2 1414 361 236 105 42 chr11 108671159 108671349 -13172507 - L1MD LINE L1 -929 5217 5016 2 1414 221 0 0 33 chr11 108671357 108671387 -13172469 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1414 6551 116 54 9 chr11 108671428 108672461 -13171395 - Lx4A LINE L1 -3 7055 5976 2 1414 1051 229 27 30 chr11 108672493 108672818 -13171038 - RLTR11A LTR ERVK -30 498 165 2 1414 14590 112 18 3 chr11 108672892 108675112 -13168744 - Lx4A LINE L1 -1075 5983 3725 2 1414 5838 109 20 5 chr11 108675092 108676612 -13167244 - Lx4A LINE L1 -3861 2016 426 2 1414 30 45 0 0 chr11 108676621 108676665 -13167191 + AT_rich Low_complexity Low_complexity 1 44 0 2 1414 25 31 0 0 chr11 108677816 108677848 -13166008 + AT_rich Low_complexity Low_complexity 1 32 0 2 1414 396 0 0 0 chr11 108678971 108679015 -13164841 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1414 25 31 0 0 chr11 108679505 108679537 -13164319 + AT_rich Low_complexity Low_complexity 1 32 0 2 1414 397 68 27 14 chr11 108680756 108680830 -13163026 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 2 1414 443 319 24 24 chr11 108682262 108682384 -13161472 + RSINE1 SINE B4 2 124 -41 2 1414 180 77 0 0 chr11 108682384 108682410 -13161446 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1414 443 319 24 24 chr11 108682410 108682451 -13161405 + RSINE1 SINE B4 125 164 -1 2 1414 775 134 52 7 chr11 108684546 108684681 -13159175 + B1_Mur1 SINE Alu 9 149 0 2 1414 369 0 0 0 chr11 108684687 108684728 -13159128 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 2 1414 279 0 0 0 chr11 108684893 108684924 -13158932 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1414 1466 50 0 47 chr11 108685727 108685917 -13157939 - IAPEz-int LTR ERVK -565 5916 5736 2 1414 2227 75 0 0 chr11 108685916 108686194 -13157662 - IAPEz-int LTR ERVK -4845 1636 1359 2 1414 3579 98 28 43 chr11 108686194 108687176 -13156680 - IAPEz-int LTR ERVK -5819 662 10 2 1414 370 91 0 0 chr11 108687187 108687242 -13156614 - IAPEz-int LTR ERVK -1930 57 3 2 1414 2222 123 73 80 chr11 108687244 108687722 -13156134 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1414 406 220 151 8 chr11 108687831 108687950 -13155906 + B4A SINE B4 2 137 -155 2 1414 360 290 50 10 chr11 108687955 108688056 -13155800 + B3 SINE B2 75 179 -37 2 1414 451 269 109 0 chr11 108688333 108688571 -13155285 - L1MEg LINE L1 -5139 945 682 2 1414 638 311 78 39 chr11 108688622 108688957 -13154899 - L1MEg LINE L1 -5497 587 240 2 1414 333 0 0 0 chr11 108689326 108689363 -13154493 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1414 239 156 26 204 chr11 108689468 108689581 -13154275 - PB1 SINE Alu -8 119 27 2 1414 459 283 143 58 chr11 108690121 108690380 -13153476 + MLT1E2 LTR MaLR 341 621 -6 2 1414 237 215 14 84 chr11 108690473 108690544 -13153312 - L1M5 LINE L1 -1274 4872 4807 2 1414 272 318 40 23 chr11 108690875 108691052 -13152804 - L1M5 LINE L1 -1550 4596 4417 2 1414 848 258 19 28 chr11 108691419 108691634 -13152222 + B3 SINE B2 3 215 -1 2 1414 204 40 0 0 chr11 108691653 108691678 -13152178 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1414 378 0 0 0 chr11 108691678 108691719 -13152137 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1414 839 241 29 0 chr11 108691719 108691893 -13151963 - B3 SINE B2 -32 184 6 2 1414 10015 93 40 8 chr11 108692275 108694393 -13149463 + L1_Mus3 LINE L1 4452 6633 -5 2 1414 570 222 47 34 chr11 108694502 108694651 -13149205 - MTD LTR MaLR 0 419 250 2 1414 233 236 139 0 chr11 108694827 108694899 -13148957 - ID4 SINE ID 0 83 2 2 1414 185 111 0 0 chr11 108695373 108695400 -13148456 - L2b LINE L2 -17 3358 3332 2 1414 1773 157 0 20 chr11 108696124 108696423 -13147433 + Lx2B LINE L1 6707 6999 -1 2 1414 733 199 57 0 chr11 108696538 108696679 -13147177 - B1_Mur1 SINE Alu 0 149 1 2 1414 478 158 38 30 chr11 108696679 108696810 -13147046 + Lx9 LINE L1 7507 7638 -6 2 1414 216 172 0 0 chr11 108699135 108699193 -13144663 + T-rich Low_complexity Low_complexity 3 60 0 2 1414 381 335 57 120 chr11 108699561 108699877 -13143979 - MLT1K LTR MaLR -42 553 258 2 1414 456 72 0 0 chr11 108700208 108700277 -13143579 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1414 216 0 0 0 chr11 108700295 108700319 -13143537 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2 1414 310 246 67 23 chr11 108700390 108700529 -13143327 + MLT1A LTR MaLR 272 370 -4 2 1414 1129 208 121 0 chr11 108700539 108700804 -13143052 + MTD LTR MaLR 1 297 -122 2 1414 357 293 41 0 chr11 108702645 108702768 -13141088 - B1F SINE Alu -2 147 20 2 1414 241 338 29 22 chr11 108702649 108702788 -13141068 - ID_B1 SINE B4 -6 218 79 2 1414 195 373 25 0 chr11 108703210 108703328 -13140528 + MIRb SINE MIR 26 146 -122 2 1414 231 157 0 79 chr11 108704881 108704957 -13138899 + T-rich Low_complexity Low_complexity 1 70 0 2 1414 2290 80 18 6 chr11 108706083 108706410 -13137446 + L1Md_F2 LINE L1 6240 6570 -12 2 1414 301 284 29 0 chr11 108707244 108707346 -13136510 - L2a LINE L2 0 3426 3322 2 1414 300 209 30 0 chr11 108707482 108707549 -13136307 - MER58A DNA MER1_type -144 80 12 2 1414 300 318 47 0 chr11 108707600 108707707 -13136149 - PB1D9 SINE Alu -6 114 3 2 1414 564 15 0 0 chr11 108708472 108708537 -13135319 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1414 806 95 17 8 chr11 108708537 108708654 -13135202 - PB1D9 SINE Alu -1 119 2 2 1414 239 228 0 17 chr11 108710159 108710217 -13133639 + RSINE1 SINE B4 13 69 -96 2 1414 283 181 162 27 chr11 108710339 108710413 -13133443 + RSINE1 SINE B4 82 165 0 2 1414 563 281 35 14 chr11 108711260 108711401 -13132455 - RSINE1 SINE B4 -19 146 3 2 1414 914 294 73 56 chr11 108711626 108711983 -13131873 + MTE2a LTR MaLR 10 372 -47 2 1414 1258 170 14 5 chr11 108712696 108712903 -13130953 + B3 SINE B2 2 210 -6 2 1414 927 235 28 47 chr11 108713145 108713359 -13130497 + B3 SINE B2 3 212 -4 2 1414 806 197 0 13 chr11 108713562 108713711 -13130145 + B1_Mur3 SINE Alu 3 149 0 2 1414 357 24 0 0 chr11 108714527 108714569 -13129287 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1414 1697 225 42 0 chr11 108714603 108715075 -13128781 - RCHARR1 DNA MER1_type -12 962 471 2 1414 264 313 99 33 chr11 108715100 108715252 -13128604 + RSINE1 SINE B4 4 165 0 2 1414 660 274 11 38 chr11 108715268 108715454 -13128402 + B3A SINE B2 1 181 -17 2 1414 1175 200 135 15 chr11 108715473 108715813 -13128043 - RCHARR1 DNA MER1_type -486 488 108 2 1414 387 60 0 0 chr11 108715820 108715870 -13127986 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 2 1414 554 247 92 12 chr11 108716670 108716834 -13127022 - B3 SINE B2 0 216 40 2 1414 377 229 12 12 chr11 108717622 108717706 -13126150 + PB1D10 SINE Alu 33 116 -1 2 1414 520 165 119 0 chr11 108717774 108717883 -13125973 - B1_Mus2 SINE Alu -18 129 8 2 1414 745 232 21 0 chr11 108717954 108718096 -13125760 - B1_Mur3 SINE Alu -1 148 4 2 1414 364 271 21 98 chr11 108718096 108718137 -13125719 - MT2B LTR ERVL -445 156 127 2 1414 196 339 0 0 chr11 108718206 108718265 -13125591 + L2a LINE L2 3350 3408 -18 2 1414 642 228 0 0 chr11 108718333 108718460 -13125396 + B1_Mur1 SINE Alu 1 127 -22 2 1414 211 267 200 0 chr11 108718501 108718591 -13125265 - B1F SINE Alu -36 113 6 2 1414 1011 76 17 0 chr11 108718957 108719129 -13124727 + (GA)n Simple_repeat Simple_repeat 1 175 0 2 1414 182 333 85 85 chr11 108720049 108720380 -13123476 - L2b LINE L2 0 3375 3045 2 1414 837 196 7 0 chr11 108725218 108725366 -13118490 + B1_Mur3 SINE Alu 1 149 0 2 1414 261 0 0 0 chr11 108725366 108725395 -13118461 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1414 362 74 19 0 chr11 108727515 108727569 -13116287 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1414 203 378 64 48 chr11 108727878 108728003 -13115853 - L2b LINE L2 -9 3366 3240 2 1414 191 182 22 22 chr11 108728125 108728180 -13115676 + MIRm SINE MIR 92 153 -123 2 1414 594 292 29 0 chr11 108728182 108728319 -13115537 + RSINE1 SINE B4 12 152 -13 2 1414 252 0 0 0 chr11 108728325 108728353 -13115503 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1414 354 270 158 8 chr11 108728592 108728719 -13115137 + B1F2 SINE Alu 3 148 -1 2 1414 516 16 0 0 chr11 108728813 108728874 -13114982 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1414 181 274 151 0 chr11 108728876 108728949 -13114907 + MIR SINE MIR 176 259 -3 2 1414 333 382 1 25 chr11 108728966 108729128 -13114728 - MIRb SINE MIR -54 154 1 2 1414 195 42 0 0 chr11 108729608 108729632 -13114224 + (AGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 1414 737 265 66 6 chr11 108729643 108729825 -13114031 + ID_B1 SINE B4 11 203 -21 3 1414 312 246 45 2 chr11 108730631 108730707 -13113149 + RSINE1 SINE B4 2 79 -213 3 1414 426 85 0 0 chr11 108730710 108730769 -13113087 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1414 7600 98 36 45 chr11 108731252 108731562 -13112294 + ORR1A2-int LTR MaLR 719 1024 -939 3 1414 1265 111 22 0 chr11 108731562 108731742 -13112114 + B2_Mm2 SINE B2 1 184 -11 3 1414 7600 98 36 45 chr11 108731742 108731754 -13112102 + ORR1A2-int LTR MaLR 1025 1025 -938 3 1414 1236 48 7 0 chr11 108731754 108731901 -13111955 - B1_Mus1 SINE Alu 0 148 1 3 1414 7600 98 36 45 chr11 108731901 108732833 -13111023 + ORR1A2-int LTR MaLR 1025 1963 0 3 1414 2371 97 51 0 chr11 108732833 108733144 -13110712 + ORR1A2 LTR MaLR 1 327 0 3 1414 294 295 13 0 chr11 108734408 108734486 -13109370 + ID4_ SINE ID 1 79 -4 3 1414 216 0 0 0 chr11 108735505 108735529 -13108327 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 3 1414 2673 180 27 19 chr11 108736026 108736546 -13107310 - RLTR11A LTR ERVK -4 524 1 3 1414 285 167 0 0 chr11 108736549 108736603 -13107253 + CT-rich Low_complexity Low_complexity 1 54 0 3 1414 479 309 112 0 chr11 108736935 108737113 -13106743 - MER58A DNA MER1_type -7 217 20 3 1414 312 268 48 12 chr11 108737341 108737424 -13106432 + B4A SINE B4 1 86 -206 3 1414 496 324 7 0 chr11 108737478 108737617 -13106239 - B4A SINE B4 -150 142 3 3 1414 252 0 0 0 chr11 108737645 108737673 -13106183 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1414 936 121 35 0 chr11 108737673 108737814 -13106042 - B1_Mur4 SINE Alu 0 150 5 3 1414 184 167 0 77 chr11 108737815 108737854 -13106002 - MIRc SINE MIR -114 154 119 3 1414 306 0 0 0 chr11 108738017 108738051 -13105805 + (TTA)n Simple_repeat Simple_repeat 2 35 0 3 1414 257 276 44 44 chr11 108739472 108739563 -13104293 + MT2B LTR ERVL 152 242 -359 3 1414 250 145 185 46 chr11 108739523 108739588 -13104268 + PB1D9 SINE Alu 46 119 -1 3 1414 423 0 0 0 chr11 108739597 108739644 -13104212 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1414 419 276 182 17 chr11 108739948 108740184 -13103672 + B4 SINE B4 2 276 -16 3 1414 288 0 0 0 chr11 108740201 108740233 -13103623 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1414 302 205 167 0 chr11 108740669 108740747 -13103109 + ID_B1 SINE B4 2 92 -132 3 1414 296 0 0 49 chr11 108740777 108740818 -13103038 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 3 1414 887 259 93 53 chr11 108740825 108740950 -13102906 - MTEb LTR MaLR -55 324 179 3 1414 342 0 0 0 chr11 108740950 108740988 -13102868 + (CCCCCT)n Simple_repeat Simple_repeat 2 39 0 3 1414 887 259 93 53 chr11 108740988 108741164 -13102692 - MTEb LTR MaLR -201 178 11 3 1414 315 205 73 49 chr11 108741327 108741409 -13102447 + PB1D7 SINE Alu 24 107 -13 3 1414 1388 57 0 33 chr11 108741511 108741693 -13102163 + B2_Mm2 SINE B2 1 176 -19 3 1414 188 343 61 27 chr11 108742325 108742472 -13101384 - L2 LINE L2 -807 2612 2461 3 1414 311 274 0 14 chr11 108743052 108743126 -13100730 - ID4_ SINE ID -6 77 5 3 1414 662 276 50 42 chr11 108743438 108743699 -13100157 + B4 SINE B4 1 263 -29 3 1414 231 132 44 0 chr11 108744333 108744401 -13099455 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1414 836 99 7 0 chr11 108744564 108744715 -13099141 + (TG)n Simple_repeat Simple_repeat 1 152 0 3 1414 288 293 0 0 chr11 108744781 108744863 -13098993 - PB1D7 SINE Alu -7 113 32 3 1414 773 183 153 51 chr11 108744914 108745110 -13098746 - B3 SINE B2 0 216 1 3 1414 785 322 92 73 chr11 108745189 108745581 -13098275 - L1ME3 LINE L1 -9 6153 5759 3 1414 2607 83 0 0 chr11 108745581 108745908 -13097948 - ORR1A2 LTR MaLR 0 327 1 3 1414 785 301 51 128 chr11 108745908 108746200 -13097656 - L1ME3 LINE L1 -404 5758 5479 3 1414 450 0 0 0 chr11 108746200 108746250 -13097606 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1414 672 301 51 128 chr11 108746250 108746334 -13097522 - L1ME3 LINE L1 -695 5478 5408 3 1414 795 158 174 61 chr11 108747601 108747797 -13096059 + URR1B DNA MER1_type 1 218 -7 3 1414 341 247 49 49 chr11 108747819 108747900 -13095956 + PB1D10 SINE Alu 5 85 -32 3 1414 222 37 0 0 chr11 108748227 108748254 -13095602 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 1414 4199 31 3 0 chr11 108748802 108749328 -13094528 - MT-int LTR MaLR -664 1299 473 3 1414 181 268 0 0 chr11 108749532 108749573 -13094283 - MIR3 SINE MIR -31 177 137 3 1414 929 97 60 0 chr11 108749610 108749744 -13094112 + B1_Mus1 SINE Alu 6 147 -1 3 1414 1477 78 16 0 chr11 108749867 108750058 -13093798 + B2_Mm2 SINE B2 1 194 -1 3 1414 185 132 0 26 chr11 108752376 108752415 -13091441 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 3 1414 195 139 0 0 chr11 108753251 108753287 -13090569 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1414 1140 124 0 0 chr11 108753628 108753806 -13090050 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 3 1414 324 0 0 0 chr11 108754245 108754281 -13089575 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1414 312 131 29 14 chr11 108756274 108756344 -13087512 + CT-rich Low_complexity Low_complexity 1 71 0 3 1414 310 196 44 30 chr11 108756344 108756430 -13087426 - ID4 SINE ID -57 95 9 3 1414 706 235 16 63 chr11 108756610 108756801 -13087055 + B3A SINE B2 1 182 -16 3 1414 1167 56 21 0 chr11 108756837 108756981 -13086875 + B1_Mm SINE Alu 1 147 0 3 1414 1059 79 0 0 chr11 108757139 108757278 -13086578 - B1_Mus2 SINE Alu 0 147 9 3 1414 526 244 116 70 chr11 108757144 108757316 -13086540 - B4 SINE B4 -71 221 42 3 1414 315 0 0 0 chr11 108758047 108758082 -13085774 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1414 799 294 69 11 chr11 108758082 108758350 -13085506 - B4A SINE B4 -6 286 3 3 1414 301 261 22 49 chr11 108758357 108758451 -13085405 - PB1D10 SINE Alu -21 99 11 3 1414 203 0 37 0 chr11 108760596 108760623 -13083233 + (CCCCCA)n Simple_repeat Simple_repeat 1 28 0 3 1414 493 263 43 6 chr11 108761050 108761205 -13082651 + MLT1A LTR MaLR 239 408 0 3 1414 1092 103 0 0 chr11 108761395 108761540 -13082316 - B1_Mus1 SINE Alu -1 147 3 3 1414 603 147 0 0 chr11 108761946 108762048 -13081808 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 1414 245 356 59 26 chr11 108763523 108763676 -13080180 - MIRc SINE MIR -97 171 14 3 1414 471 327 17 80 chr11 108763877 108764053 -13079803 + RSINE1 SINE B4 1 165 0 3 1414 438 108 0 0 chr11 108764296 108764361 -13079495 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1414 950 168 0 20 chr11 108764456 108764608 -13079248 + B1_Mur3 SINE Alu 1 149 0 3 1414 262 305 156 0 chr11 108764888 108765016 -13078840 + Tigger5 DNA MER2_type 2156 2303 -103 3 1414 360 315 0 0 chr11 108765018 108765110 -13078746 + PB1D10 SINE Alu 1 92 -25 3 1414 243 355 11 11 chr11 108765114 108765208 -13078648 + Tigger5 DNA MER2_type 2313 2406 0 3 1414 780 229 29 78 chr11 108765237 108765441 -13078415 + B3A SINE B2 5 198 0 3 1414 423 167 73 28 chr11 108766540 108766634 -13077222 - PB1D7 SINE Alu 0 147 43 3 1414 731 35 0 0 chr11 108766633 108766720 -13077136 - BC1_Mm scRNA scRNA -65 87 1 3 1414 225 293 0 0 chr11 108766680 108766738 -13077118 - ZP3AR Satellite Satellite -130 82 25 3 1414 212 311 16 0 chr11 108766705 108766766 -13077090 - PB1D10 SINE Alu -47 70 9 3 1414 299 208 120 4 chr11 108767206 108767314 -13076542 + ID_B1 SINE B4 1 185 -39 3 1414 336 270 0 0 chr11 108768862 108768936 -13074920 + ID SINE ID 11 84 -140 3 1414 396 238 24 0 chr11 108768947 108769031 -13074825 + ID_B1 SINE B4 128 213 -11 3 1414 347 235 131 36 chr11 108769496 108769513 -13074343 + ID_B1 SINE B4 67 216 -8 3 1414 599 161 142 17 chr11 108769513 108769633 -13074223 + B1_Mur3 SINE Alu 7 141 -8 3 1414 585 0 0 0 chr11 108769633 108769698 -13074158 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1414 707 167 221 53 chr11 108770249 108770439 -13073417 - URR1A DNA MER1_type 0 226 5 3 1414 291 54 0 0 chr11 108770543 108770580 -13073276 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1414 610 214 69 0 chr11 108772661 108772792 -13071064 + B1_Mur1 SINE Alu 10 149 0 3 1414 450 350 16 28 chr11 108772794 108772976 -13070880 - MLT1F2 LTR MaLR -373 187 8 3 1414 1068 55 0 0 chr11 108773803 108773931 -13069925 + B1_Mus2 SINE Alu 1 128 -19 3 1414 297 15 29 71 chr11 108773932 108774002 -13069854 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 3 1414 277 326 21 53 chr11 108774060 108774154 -13069702 - ID_B1 SINE B4 -132 92 2 3 1414 387 231 256 0 chr11 108774416 108774533 -13069323 - B1F2 SINE Alu 0 149 3 3 1414 678 170 27 0 chr11 108774884 108774996 -13068860 + B1_Mur4 SINE Alu 1 115 -35 3 1414 686 35 12 0 chr11 108774997 108775082 -13068774 + ORR1A4 LTR MaLR 236 321 -8 3 1414 1174 62 7 0 chr11 108775681 108775827 -13068029 + B1_Mus1 SINE Alu 2 148 0 3 1414 183 100 0 0 chr11 108775835 108775865 -13067991 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 3 1414 251 195 17 55 chr11 108775994 108776066 -13067790 + B3A SINE B2 2 70 -146 3 1414 581 209 9 0 chr11 108776135 108776240 -13067616 - B1_Mm SINE Alu -40 107 2 3 1414 207 0 0 0 chr11 108776304 108776327 -13067529 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 1414 1577 170 4 7 chr11 108776365 108776638 -13067218 - ORR1A1 LTR MaLR -74 272 1 3 1414 471 18 0 0 chr11 108776757 108776813 -13067043 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1414 545 222 28 9 chr11 108776831 108776940 -13066916 - B4A SINE B4 -22 270 160 3 1414 387 0 0 0 chr11 108776990 108777033 -13066823 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1414 1205 68 0 13 chr11 108777056 108777206 -13066650 - B1_Mus1 SINE Alu 0 148 1 3 1414 390 21 0 0 chr11 108777234 108777281 -13066575 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1414 741 12 0 0 chr11 108777456 108777542 -13066314 + (ATAGG)n Simple_repeat Simple_repeat 2 87 0 3 1414 877 278 105 49 chr11 108777559 108777875 -13065981 - MTEa LTR MaLR -52 307 2 4 1414 511 306 139 43 chr11 108777986 108778287 -13065569 + ORR1E LTR MaLR 19 348 -11 4 1414 992 184 6 6 chr11 108778355 108778535 -13065321 + B3 SINE B2 1 180 -36 4 1414 540 0 0 0 chr11 108779748 108779808 -13064048 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1414 253 325 110 61 chr11 108780505 108780669 -13063187 - ID_B1 SINE B4 -3 221 50 4 1414 180 0 0 0 chr11 108780710 108780730 -13063126 + (C)n Simple_repeat Simple_repeat 1 20 0 4 1414 447 19 0 0 chr11 108781181 108781233 -13062623 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1414 21 0 0 0 chr11 108781354 108781375 -13062481 + GC_rich Low_complexity Low_complexity 1 21 0 4 1414 24 53 0 0 chr11 108781590 108781628 -13062228 + GC_rich Low_complexity Low_complexity 1 38 0 4 1414 24 0 0 0 chr11 108781639 108781663 -13062193 + GC_rich Low_complexity Low_complexity 1 24 0 4 1414 21 36 0 0 chr11 108781945 108781973 -13061883 + GC_rich Low_complexity Low_complexity 1 28 0 4 1414 34 24 0 0 chr11 108782205 108782246 -13061610 + GC_rich Low_complexity Low_complexity 1 41 0 4 1414 31 0 0 0 chr11 108782386 108782417 -13061439 + GC_rich Low_complexity Low_complexity 1 31 0 4 1414 21 36 0 0 chr11 108782518 108782546 -13061310 + GC_rich Low_complexity Low_complexity 1 28 0 4 1414 253 358 40 7 chr11 108787385 108787537 -13056319 + MIRc SINE MIR 110 266 -2 4 1414 342 0 0 0 chr11 108789412 108789450 -13054406 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1415 189 0 0 0 chr11 108791899 108791920 -13051936 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1415 972 121 198 23 chr11 108794148 108794325 -13049531 - B3 SINE B2 -8 208 1 4 1415 718 225 123 41 chr11 108794475 108794670 -13049186 - B3 SINE B2 0 216 6 4 1415 651 196 68 61 chr11 108794753 108794900 -13048956 - B1_Mur1 SINE Alu 0 149 2 4 1415 564 15 0 0 chr11 108795018 108795083 -13048773 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1415 352 316 49 43 chr11 108795167 108795329 -13048527 - Tigger15a DNA TcMar -513 202 40 4 1415 508 292 0 83 chr11 108795718 108795875 -13047981 - ID_B1 SINE B4 -14 210 67 4 1415 253 276 0 0 chr11 108798613 108798671 -13045185 - RSINE1 SINE B4 0 165 108 4 1415 323 174 294 0 chr11 108799950 108800042 -13043814 - PB1D9 SINE Alu 0 120 2 4 1415 252 0 0 0 chr11 108801044 108801072 -13042784 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 4 1415 950 212 51 10 chr11 108801078 108801273 -13042583 - B3 SINE B2 -13 203 1 4 1415 197 282 71 0 chr11 108801274 108801359 -13042497 + L2a LINE L2 3330 3420 -6 4 1415 237 65 0 0 chr11 108802321 108802352 -13041504 + (GGA)n Simple_repeat Simple_repeat 3 33 0 4 1415 33 0 0 0 chr11 108802762 108802795 -13041061 + AT_rich Low_complexity Low_complexity 1 33 0 4 1415 198 71 0 0 chr11 108803706 108803734 -13040122 + (CCA)n Simple_repeat Simple_repeat 1 28 0 4 1415 1410 56 0 0 chr11 108804624 108804804 -13039052 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1415 432 55 0 0 chr11 108804804 108804859 -13038997 + (TCC)n Simple_repeat Simple_repeat 3 57 0 4 1415 445 240 115 88 chr11 108806618 108806810 -13037046 + ID_B1 SINE B4 7 203 -21 4 1415 1212 21 28 0 chr11 108807769 108807912 -13035944 + B1_Mm SINE Alu 1 147 0 4 1415 261 0 0 0 chr11 108810391 108810420 -13033436 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 1415 22 0 0 0 chr11 108812070 108812092 -13031764 + AT_rich Low_complexity Low_complexity 1 22 0 4 1415 298 134 86 43 chr11 108812652 108812722 -13031134 + ID2 SINE ID 2 74 -9 4 1415 658 259 89 11 chr11 108813283 108813474 -13030382 - B4A SINE B4 -85 207 2 4 1415 711 339 104 13 chr11 108813479 108813566 -13030290 - L1MB1 LINE L1 -114 6054 5957 4 1415 590 208 272 6 chr11 108813566 108813735 -13030121 - B3 SINE B2 -2 214 1 4 1415 711 342 117 11 chr11 108813735 108814150 -13029706 - L1MB1 LINE L1 -233 5956 5480 4 1415 289 262 0 15 chr11 108814151 108814217 -13029639 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1415 510 17 0 0 chr11 108814244 108814303 -13029553 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1415 290 314 43 168 chr11 108814322 108814521 -13029335 - B4 SINE B4 -28 264 96 4 1415 837 207 7 0 chr11 108814521 108814666 -13029190 - B1_Mur2 SINE Alu -1 148 3 4 1415 290 320 35 126 chr11 108814666 108814743 -13029113 - B4 SINE B4 -197 95 20 4 1415 284 270 182 0 chr11 108814748 108814885 -13028971 - L1MB1 LINE L1 -689 5479 5318 4 1415 445 252 78 8 chr11 108814893 108815021 -13028835 - B3 SINE B2 -3 213 77 4 1415 858 283 78 20 chr11 108815022 108815318 -13028538 - Lx9 LINE L1 -1014 6630 6318 4 1415 481 247 40 51 chr11 108815391 108815567 -13028289 + Lx9 LINE L1 4200 4386 -1500 4 1415 186 117 12 83 chr11 108815591 108815675 -13028181 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 4 1415 4125 263 65 32 chr11 108815685 108815703 -13028153 + Lx9 LINE L1 4360 4377 -1470 4 1415 538 39 26 0 chr11 108815703 108815780 -13028076 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 1415 4125 266 65 31 chr11 108815780 108817292 -13026564 + Lx9 LINE L1 4378 5974 -1670 4 1415 348 24 0 0 chr11 108817317 108817358 -13026498 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1415 325 236 0 14 chr11 108817834 108817907 -13025949 + PB1D10 SINE Alu 41 112 -5 4 1415 230 293 0 0 chr11 108817912 108817970 -13025886 + GA-rich Low_complexity Low_complexity 1 58 0 4 1415 722 247 18 6 chr11 108818205 108818376 -13025480 - B3A SINE B2 -24 174 2 4 1415 1043 72 58 0 chr11 108818402 108818541 -13025315 + B1_Mm SINE Alu 1 147 0 4 1415 360 0 0 0 chr11 108818780 108818820 -13025036 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 4 1415 369 0 0 0 chr11 108818824 108818865 -13024991 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1415 347 275 0 32 chr11 108818917 108819011 -13024845 + B1F1 SINE Alu 33 123 -26 4 1415 913 213 258 39 chr11 108820772 108821109 -13022747 - MTD LTR MaLR 0 419 9 4 1415 483 267 80 15 chr11 108821324 108821461 -13022395 + MLT1K LTR MaLR 133 278 -317 4 1415 439 346 12 25 chr11 108821518 108821678 -13022178 - RSINE1 SINE B4 -1 164 7 4 1415 328 194 0 16 chr11 108821684 108821747 -13022109 - PB1D7 SINE Alu -6 114 53 4 1415 231 333 19 48 chr11 108821701 108821805 -13022051 - LTR48B LTR ERV1 -140 504 404 4 1415 1223 28 7 7 chr11 108822138 108822284 -13021572 - B1_Mm SINE Alu -1 146 1 4 1415 405 320 0 58 chr11 108822430 108822619 -13021237 + CT-rich Low_complexity Low_complexity 2 179 0 4 1415 279 173 0 0 chr11 108823440 108823492 -13020364 + T-rich Low_complexity Low_complexity 1 52 0 4 1415 483 87 0 0 chr11 108823533 108823602 -13020254 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1415 23 0 0 0 chr11 108823832 108823855 -13020001 + AT_rich Low_complexity Low_complexity 1 23 0 4 1415 234 0 0 0 chr11 108823937 108823963 -13019893 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1415 231 327 61 43 chr11 108823970 108824085 -13019771 - B1_Mus1 SINE Alu -22 126 10 4 1415 441 169 0 0 chr11 108824112 108824195 -13019661 + A-rich Low_complexity Low_complexity 1 83 0 4 1415 381 136 45 0 chr11 108824452 108824518 -13019338 + ID_B1 SINE B4 142 210 -14 4 1415 722 131 0 0 chr11 108824551 108824658 -13019198 + B3 SINE B2 2 108 -108 4 1415 270 286 71 0 chr11 108824727 108824797 -13019059 - ID SINE ID -147 77 3 4 1415 288 0 0 0 chr11 108824897 108824929 -13018927 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1415 333 328 10 22 chr11 108824945 108825091 -13018765 - B4 SINE B4 -118 174 36 4 1415 371 250 95 35 chr11 108825421 108825537 -13018319 - MER63B DNA AcHobo -2 434 312 4 1415 650 309 14 46 chr11 108825989 108826204 -13017652 + ID_B1 SINE B4 1 216 -76 4 1415 336 289 127 38 chr11 108826757 108826915 -13016941 - MER20 DNA MER1_type -42 177 6 4 1415 582 301 75 35 chr11 108826917 108827283 -13016573 - L1ME2 LINE L1 -244 5935 5555 4 1415 228 35 0 0 chr11 108827634 108827663 -13016193 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1415 805 109 186 0 chr11 108827788 108827805 -13016051 - B2_Mm2 SINE B2 -4 191 175 4 1415 786 231 83 29 chr11 108827805 108828010 -13015846 - B3 SINE B2 0 216 1 4 1415 805 109 186 0 chr11 108828010 108828023 -13015833 - B2_Mm2 SINE B2 -21 174 162 4 1415 408 40 0 0 chr11 108828023 108828073 -13015783 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1415 805 109 186 0 chr11 108828073 108828197 -13015659 - B2_Mm2 SINE B2 -34 161 9 4 1415 24 0 0 29 chr11 108828386 108828399 -13015457 + AT_rich Low_complexity Low_complexity 1 13 0 4 1415 806 218 0 0 chr11 108828399 108828546 -13015310 + B1_Mur1 SINE Alu 1 147 -2 4 1415 24 0 0 29 chr11 108828546 108828567 -13015289 + AT_rich Low_complexity Low_complexity 1 21 0 4 1415 395 38 19 0 chr11 108828567 108828620 -13015236 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1415 445 302 25 16 chr11 108828621 108828742 -13015114 - RSINE1 SINE B4 -41 124 3 4 1415 324 282 22 37 chr11 108828878 108829014 -13014842 - L1ME2 LINE L1 -2172 3974 3841 4 1415 462 256 15 46 chr11 108829051 108829182 -13014674 - B1_Mus1 SINE Alu -20 128 2 4 1415 229 346 9 37 chr11 108829311 108829419 -13014437 - L1ME2 LINE L1 -2511 3635 3531 4 1415 450 114 0 0 chr11 108829506 108829576 -13014280 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1415 394 164 55 0 chr11 108829611 108829684 -13014172 - MTE2b LTR MaLR -302 77 1 4 1415 369 134 0 95 chr11 108829687 108829761 -13014095 - B1F SINE Alu -28 121 55 4 1415 301 284 151 2 chr11 108829749 108829873 -13013983 + B4A SINE B4 94 241 -51 4 1415 1104 65 0 0 chr11 108830108 108830262 -13013594 + (CA)n Simple_repeat Simple_repeat 1 154 0 4 1415 1211 87 17 0 chr11 108830262 108830435 -13013421 + B2_Mm2 SINE B2 6 181 -14 4 1415 232 214 22 11 chr11 108830454 108830544 -13013312 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1415 1091 193 9 33 chr11 108830685 108830899 -13012957 - B3 SINE B2 -6 210 2 4 1415 270 81 0 0 chr11 108831064 108831101 -13012755 + (TAA)n Simple_repeat Simple_repeat 2 38 0 4 1415 426 377 20 66 chr11 108831336 108831580 -13012276 - L1ME4a LINE L1 -176 5948 5716 4 1415 1164 63 7 0 chr11 108831596 108831739 -13012117 + B1_Mus1 SINE Alu 5 148 0 4 1415 262 109 0 89 chr11 108831757 108831858 -13011998 + A-rich Low_complexity Low_complexity 2 93 0 5 1415 21 57 0 0 chr11 108832022 108832057 -13011799 + AT_rich Low_complexity Low_complexity 1 35 0 5 1415 954 198 10 54 chr11 108832059 108832262 -13011594 + B3A SINE B2 1 194 -4 5 1415 214 240 0 39 chr11 108832904 108832956 -13010900 + polypyrimidine Low_complexity Low_complexity 4 53 0 5 1415 761 197 21 0 chr11 108832964 108833106 -13010750 - B1_Mur4 SINE Alu -5 145 1 5 1415 299 206 133 27 chr11 108833109 108833184 -13010672 - B1F1 SINE Alu 0 149 67 5 1415 324 239 8 23 chr11 108833218 108833351 -13010505 + C-rich Low_complexity Low_complexity 3 133 0 5 1415 225 163 116 0 chr11 108833356 108833399 -13010457 + MTE2b LTR MaLR 6 53 -326 5 1415 435 226 51 17 chr11 108833477 108833594 -13010262 + MTD LTR MaLR 285 405 -14 5 1415 229 238 48 0 chr11 108833616 108833679 -13010177 - ID4_ SINE ID -16 67 2 5 1415 732 166 7 66 chr11 108833699 108833850 -13010006 - B1_Mus1 SINE Alu -1 147 5 5 1415 330 26 0 0 chr11 108833881 108833920 -13009936 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 5 1415 852 136 7 22 chr11 108833920 108834055 -13009801 - B1_Mur3 SINE Alu -8 141 9 5 1415 258 359 19 10 chr11 108834131 108834235 -13009621 - PB1D10 SINE Alu -10 107 3 5 1415 1188 77 76 16 chr11 108834244 108834428 -13009428 - B2_Mm2 SINE B2 0 195 1 5 1415 316 338 25 50 chr11 108835433 108835592 -13008264 - MIR SINE MIR -21 241 87 5 1415 794 254 116 12 chr11 108836546 108836805 -13007051 + B4 SINE B4 1 286 -6 5 1415 243 306 9 84 chr11 108838130 108838237 -13005619 - MIRc SINE MIR -95 173 75 5 1415 215 331 3 27 chr11 108838742 108838843 -13005013 - MIRc SINE MIR -110 166 64 5 1415 807 258 167 9 chr11 108839127 108839361 -13004495 - ORR1E LTR MaLR -103 267 1 5 1415 350 340 43 0 chr11 108839440 108839604 -13004252 + MIRc SINE MIR 3 168 -94 5 1415 312 27 0 0 chr11 108839721 108839758 -13004098 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1415 1026 242 72 69 chr11 108839784 108840161 -13003695 + MTE2a LTR MaLR 2 379 0 5 1415 528 230 111 0 chr11 108840172 108840298 -13003558 - B3 SINE B2 -4 212 73 5 1415 411 333 99 34 chr11 108840375 108840395 -13003461 + MLT1A1 LTR MaLR 118 133 -232 5 1415 1662 179 190 91 chr11 108840395 108840837 -13003019 + MT2A LTR ERVL 1 493 -40 5 1415 279 0 0 0 chr11 108840837 108840868 -13002988 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 5 1415 1662 179 190 91 chr11 108840868 108840910 -13002946 + MT2A LTR ERVL 494 533 0 5 1415 430 313 88 16 chr11 108840910 108841122 -13002734 + MLT1A1 LTR MaLR 134 408 0 5 1415 1078 218 8 37 chr11 108841181 108841424 -13002432 + B4A SINE B4 1 236 -56 5 1415 183 80 0 0 chr11 108841481 108841506 -13002350 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5 1415 210 247 38 38 chr11 108841507 108841587 -13002269 - L2a LINE L2 -306 3120 3041 5 1415 330 286 146 25 chr11 108842302 108842460 -13001396 + L1MA6 LINE L1 6122 6298 -2 5 1415 1004 197 38 24 chr11 108843064 108843277 -13000579 + ID_B1 SINE B4 2 217 -7 5 1415 1141 74 71 33 chr11 108843284 108843466 -13000390 + L1_Mus1 LINE L1 6379 6567 0 5 1415 221 373 27 9 chr11 108843494 108843605 -13000251 + MIR SINE MIR 34 146 -116 5 1415 333 251 45 10 chr11 108843663 108843772 -13000084 + MER5A1 DNA MER1_type 1 116 -73 5 1415 402 185 128 21 chr11 108843824 108843918 -12999938 - PB1D9 SINE Alu 0 120 17 5 1415 238 244 0 0 chr11 108843915 108843960 -12999896 + MTEa LTR MaLR 330 374 -5 5 1415 1657 187 49 57 chr11 108844323 108844692 -12999164 - ORR1D1 LTR MaLR -3 371 6 5 1415 405 0 0 0 chr11 108845583 108845628 -12998228 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1415 891 274 55 4 chr11 108845630 108845886 -12997970 - B4A SINE B4 -23 269 1 5 1415 976 323 48 27 chr11 108846036 108846411 -12997445 - LTR53 LTR ERVL -91 428 46 5 1415 325 362 123 13 chr11 108847480 108847634 -12996222 - MLT1G1 LTR MaLR -280 299 129 5 1415 1072 249 49 8 chr11 108847945 108848208 -12995648 + B4A SINE B4 5 278 -14 5 1415 324 0 0 0 chr11 108848530 108848566 -12995290 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1415 270 259 123 0 chr11 108849037 108849118 -12994738 - 5S rRNA rRNA -30 91 1 5 1415 225 255 0 38 chr11 108849203 108849256 -12994600 - B4A SINE B4 -234 58 8 5 1415 429 257 96 17 chr11 108849295 108849410 -12994446 + RSINE1 SINE B4 4 127 -38 5 1415 573 260 52 73 chr11 108850550 108850741 -12993115 + MER3 DNA MER1_type 11 197 -12 5 1415 923 210 6 11 chr11 108850840 108851018 -12992838 - B3A SINE B2 -19 179 3 5 1415 304 281 0 24 chr11 108851027 108851111 -12992745 + HAL1-2a_MD LINE L1 2432 2513 -511 5 1415 361 157 177 35 chr11 108851142 108851340 -12992516 - RMER17D2 LTR ERVK -287 522 297 5 1415 233 275 60 36 chr11 108852027 108852110 -12991746 + MIR SINE MIR 34 118 -90 5 1415 263 28 0 27 chr11 108852146 108852183 -12991673 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1415 1494 60 16 0 chr11 108852186 108852371 -12991485 - B2_Mm2 SINE B2 -7 188 1 5 1415 200 264 11 0 chr11 108852433 108852520 -12991336 + CT-rich Low_complexity Low_complexity 1 88 0 5 1415 295 196 0 0 chr11 108852520 108852571 -12991285 - ID_B1 SINE B4 -2 222 172 5 1415 231 271 51 0 chr11 108852524 108852583 -12991273 - PB1D7 SINE Alu -6 114 53 5 1415 1051 57 35 7 chr11 108852609 108852751 -12991105 - B1_Mm SINE Alu 0 147 2 5 1415 214 306 0 76 chr11 108852751 108852843 -12991013 - ID_B1 SINE B4 -59 165 81 5 1415 235 254 54 40 chr11 108854214 108854288 -12989568 - MLT1F2 LTR MaLR -60 500 426 5 1415 442 352 0 8 chr11 108854373 108854496 -12989360 - MLT1F LTR MaLR -423 125 4 5 1415 320 315 79 26 chr11 108854649 108854763 -12989093 - MIR SINE MIR -26 236 117 5 1415 2787 25 3 50 chr11 108855259 108855602 -12988254 + IAPLTR2b LTR ERVK 1 327 0 5 1415 359 227 26 7 chr11 108856892 108856999 -12986857 - MIRc SINE MIR -154 122 16 5 1415 481 307 133 66 chr11 108858044 108858421 -12985435 - MLT1J LTR MaLR 0 512 111 5 1415 430 291 102 95 chr11 108858423 108858618 -12985238 + MLT1B LTR MaLR 68 253 -137 5 1415 699 12 0 0 chr11 108858618 108858698 -12985158 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1415 430 291 102 95 chr11 108858698 108858817 -12985039 + MLT1B LTR MaLR 254 384 -6 5 1415 287 299 59 12 chr11 108860180 108860352 -12983504 - RLTR4_MM-int LTR ERV1 -6877 724 521 5 1415 252 0 0 0 chr11 108860989 108861017 -12982839 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1415 530 260 39 26 chr11 108861069 108861223 -12982633 - RLTR23 LTR ERV1 0 430 275 5 1415 1527 229 57 13 chr11 108861230 108861602 -12982254 + RLTR22_Mur LTR ERVK 415 802 -1046 5 1415 462 246 69 31 chr11 108861671 108861801 -12982055 + RLTR22_Mur LTR ERVK 1590 1724 -124 5 1415 383 338 78 21 chr11 108861942 108862184 -12981672 + LTR16A LTR ERVL 104 359 -92 5 1415 426 231 0 130 chr11 108862201 108862355 -12981501 - RMER4B LTR ERVK 0 585 452 5 1415 306 282 0 12 chr11 108862462 108862548 -12981308 - B4 SINE B4 -73 219 135 5 1415 2587 302 31 38 chr11 108862560 108863462 -12980394 - Lx8 LINE L1 -405 7068 6173 5 1415 306 132 0 0 chr11 108863493 108863546 -12980310 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1415 260 221 156 44 chr11 108863720 108863810 -12980046 - B4 SINE B4 -190 102 3 5 1415 393 22 0 0 chr11 108864527 108864573 -12979283 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1415 189 74 0 0 chr11 108864648 108864675 -12979181 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1415 428 250 186 0 chr11 108864693 108864817 -12979039 - RSINE1 SINE B4 -18 147 1 5 1415 450 0 0 0 chr11 108865689 108865739 -12978117 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1415 598 314 112 58 chr11 108865765 108866025 -12977831 - B4A SINE B4 -12 280 7 5 1415 215 200 58 39 chr11 108866498 108866550 -12977306 - PB1D10 SINE Alu -1 116 64 5 1415 716 262 0 0 chr11 108866504 108866645 -12977211 - ID_B1 SINE B4 -5 219 79 5 1415 1075 193 5 76 chr11 108867611 108867835 -12976021 + B3 SINE B2 2 209 -7 5 1415 311 280 31 92 chr11 108867858 108868086 -12975770 + L1_Mur3 LINE L1 5357 5570 -310 5 1415 237 343 41 17 chr11 108868160 108868332 -12975524 + L1_Rod LINE L1 5655 5830 -17 5 1415 369 0 0 0 chr11 108868533 108868574 -12975282 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1415 800 148 35 7 chr11 108868693 108868826 -12975030 + B1_Mur4 SINE Alu 2 139 -11 5 1415 357 24 0 0 chr11 108868826 108868868 -12974988 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 5 1415 180 0 0 0 chr11 108868887 108868907 -12974949 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 5 1415 1684 194 81 6 chr11 108869219 108869332 -12974524 - RMER1B Other Other 0 1066 938 5 1415 510 17 0 0 chr11 108869332 108869391 -12974465 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1415 1684 194 81 6 chr11 108869391 108869625 -12974231 - RMER1B Other Other -129 937 694 5 1415 819 255 85 50 chr11 108870487 108870747 -12973109 + B4A SINE B4 4 272 -20 5 1415 225 0 0 0 chr11 108870887 108870912 -12972944 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1415 842 225 79 16 chr11 108870923 108871113 -12972743 - ID_B1 SINE B4 -19 205 4 5 1415 414 0 0 0 chr11 108871385 108871431 -12972425 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1415 1244 35 0 0 chr11 108871434 108871576 -12972280 - B1_Mus1 SINE Alu -5 143 2 5 1415 496 233 14 89 chr11 108871723 108871740 -12972116 + ID_B1 SINE B4 79 213 -11 5 1415 643 256 16 0 chr11 108871740 108871869 -12971987 + B1F2 SINE Alu 8 138 -11 5 1415 288 304 25 40 chr11 108872722 108872887 -12970969 + MIR SINE MIR 15 170 -92 5 1415 3939 42 29 0 chr11 108872959 108873436 -12970420 - LSU-rRNA_Hsa rRNA rRNA -2203 2832 2342 6 1415 592 254 46 29 chr11 108873735 108873909 -12969947 - B3A SINE B2 -6 192 16 6 1415 451 315 135 24 chr11 108873971 108874267 -12969589 - MamRep434 DNA TcMar -41 385 57 6 1415 275 320 12 25 chr11 108874409 108874489 -12969367 - RMER30 DNA MER1_type 0 202 124 6 1415 6413 59 30 2 chr11 108874527 108875354 -12968502 - Lx3_Mus LINE L1 -50 5836 4987 6 1415 641 40 0 0 chr11 108875351 108875426 -12968430 + Lx3_Mus LINE L1 5819 5893 -1116 6 1415 2809 80 15 13 chr11 108875426 108875819 -12968037 + Lx3_Mus LINE L1 6604 6997 -12 6 1415 273 331 71 46 chr11 108876124 108876155 -12967701 + L2 LINE L2 1838 1865 -1554 6 1415 504 0 0 0 chr11 108876155 108876211 -12967645 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1415 273 331 71 46 chr11 108876211 108876530 -12967326 + L2 LINE L2 1866 2197 -1222 6 1415 657 265 23 28 chr11 108877584 108877801 -12966055 - B3 SINE B2 0 216 1 6 1415 189 0 0 0 chr11 108877975 108877996 -12965860 + (TCTCTG)n Simple_repeat Simple_repeat 4 24 0 6 1415 2080 257 50 42 chr11 108878051 108878651 -12965205 - Lx7 LINE L1 -376 7320 6716 6 1415 702 234 127 21 chr11 108878652 108878888 -12964968 - Lx8 LINE L1 -220 7253 6993 6 1415 317 320 26 18 chr11 108878979 108879107 -12964749 + MIRc SINE MIR 31 159 -117 6 1415 354 98 0 0 chr11 108879505 108879556 -12964300 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 6 1415 699 236 7 0 chr11 108879556 108879704 -12964152 - B1_Mur1 SINE Alu 0 149 1 6 1415 340 346 118 22 chr11 108879743 108879879 -12963977 - RSINE1 SINE B4 -15 150 2 6 1415 368 326 163 30 chr11 108880038 108880240 -12963616 + MLT1K LTR MaLR 20 248 -347 6 1415 342 0 0 0 chr11 108880259 108880297 -12963559 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1415 750 240 34 14 chr11 108880305 108880453 -12963403 - B3A SINE B2 -47 151 1 6 1415 239 376 62 21 chr11 108880527 108880720 -12963136 + MLT1K LTR MaLR 364 564 -31 6 1415 1149 88 0 0 chr11 108880734 108880881 -12962975 - B1_Mus2 SINE Alu 0 147 1 6 1415 3892 110 37 2 chr11 108880918 108881481 -12962375 - Lx3B LINE L1 0 6973 6391 6 1415 321 118 0 0 chr11 108881485 108881536 -12962320 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1415 360 313 60 0 chr11 108881548 108881682 -12962174 - RSINE1 SINE B4 -19 146 5 6 1415 251 284 0 15 chr11 108882567 108882635 -12961221 - B4A SINE B4 -9 283 217 6 1415 395 256 77 72 chr11 108882646 108882727 -12961129 - B2_Mm2 SINE B2 -8 187 116 6 1415 2454 77 12 30 chr11 108882727 108883060 -12960796 - ORR1A2 LTR MaLR 0 327 1 6 1415 424 243 94 3 chr11 108883060 108883159 -12960697 - B3A SINE B2 -80 115 6 6 1415 461 269 184 18 chr11 108883152 108883315 -12960541 - B4A SINE B4 -59 233 44 6 1415 1002 194 71 0 chr11 108883322 108883518 -12960338 + MTD LTR MaLR 1 210 -209 6 1415 15533 56 7 1 chr11 108883520 108885474 -12958382 + L1Md_F2 LINE L1 3620 5586 -297 6 1415 7731 64 7 5 chr11 108885475 108886518 -12957338 + L1Md_F2 LINE L1 5588 6582 0 6 1415 1267 141 5 10 chr11 108886634 108886827 -12957029 + URR1A DNA MER1_type 35 226 0 6 1415 837 185 0 152 chr11 108886827 108887025 -12956831 + MTD LTR MaLR 246 411 -8 6 1415 238 259 0 6 chr11 108887248 108887304 -12956552 + MER2 DNA MER2_type 18 71 -274 6 1415 902 276 89 16 chr11 108887308 108887621 -12956235 - Lx8 LINE L1 -521 6952 6617 6 1415 375 298 8 42 chr11 108887619 108887738 -12956118 + Lx8 LINE L1 7086 7200 -273 6 1415 630 0 0 0 chr11 108887738 108887808 -12956048 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 1415 820 280 38 21 chr11 108888036 108888273 -12955583 + MER2 DNA MER2_type 69 309 -36 6 1415 282 207 38 16 chr11 108888352 108888433 -12955423 - MIRc SINE MIR -83 193 109 6 1415 228 86 0 0 chr11 108888865 108888900 -12954956 + (TATG)n Simple_repeat Simple_repeat 2 36 0 6 1415 226 314 86 14 chr11 108889005 108889131 -12954725 - MIRm SINE MIR -79 197 63 6 1415 234 326 71 84 chr11 108889181 108889335 -12954521 + MIRb SINE MIR 69 220 -48 6 1415 1320 71 18 6 chr11 108889335 108890132 -12953724 + (TAGA)n Simple_repeat Simple_repeat 1 806 0 6 1415 221 0 35 0 chr11 108890170 108890199 -12953657 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1415 501 279 164 61 chr11 108890609 108890823 -12953033 - B4 SINE B4 -5 287 52 6 1415 577 134 9 9 chr11 108891057 108891170 -12952686 + GA-rich Low_complexity Low_complexity 1 113 0 6 1415 630 0 0 0 chr11 108891746 108891816 -12952040 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1415 525 177 43 34 chr11 108891922 108892039 -12951817 + B3 SINE B2 99 216 0 6 1415 1053 226 151 10 chr11 108892091 108892444 -12951412 - MTD LTR MaLR -1 418 1 6 1415 423 0 0 0 chr11 108892725 108892772 -12951084 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1415 288 0 0 0 chr11 108892772 108892803 -12951053 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1415 279 0 0 0 chr11 108892803 108892833 -12951023 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1415 673 304 94 33 chr11 108892856 108893101 -12950755 - B4 SINE B4 -30 262 3 6 1415 448 294 98 33 chr11 108893102 108893285 -12950571 + RMER30 DNA MER1_type 7 201 -1 6 1415 351 282 101 47 chr11 108893286 108893435 -12950421 + MER20 DNA MER1_type 55 211 -8 6 1415 240 35 0 0 chr11 108893478 108893507 -12950349 + (CGGGGG)n Simple_repeat Simple_repeat 2 30 0 6 1415 327 78 0 0 chr11 108893507 108893557 -12950299 + (CAG)n Simple_repeat Simple_repeat 3 53 0 6 1415 648 279 0 24 chr11 108893635 108893800 -12950056 - RSINE1 SINE B4 -2 163 3 6 1415 441 242 0 0 chr11 108894615 108894704 -12949152 + B4 SINE B4 7 95 -197 6 1415 532 266 81 0 chr11 108894704 108894828 -12949028 + RSINE1 SINE B4 2 135 -30 6 1415 345 47 0 0 chr11 108894828 108894871 -12948985 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1415 607 308 40 30 chr11 108894881 108895082 -12948774 + B4 SINE B4 90 292 0 6 1415 438 309 31 25 chr11 108895979 108896175 -12947681 - L1M5 LINE L1 -376 5748 5552 6 1415 439 210 0 145 chr11 108896368 108896485 -12947371 - PB1D10 SINE Alu -1 116 17 6 1415 265 269 13 13 chr11 108896553 108896632 -12947224 + CT-rich Low_complexity Low_complexity 1 79 0 6 1415 929 247 10 35 chr11 108896641 108896838 -12947018 - ID_B1 SINE B4 -14 210 19 6 1415 797 248 136 57 chr11 108897096 108897361 -12946495 - B4A SINE B4 0 292 7 6 1415 834 255 97 77 chr11 108897699 108897951 -12945905 + MTD LTR MaLR 1 269 -150 6 1415 586 283 114 4 chr11 108898039 108898284 -12945572 - B4A SINE B4 -18 274 3 6 1415 395 298 64 43 chr11 108898413 108898641 -12945215 + MIRc SINE MIR 2 228 -40 6 1415 426 329 110 0 chr11 108899221 108899367 -12944489 + B4 SINE B4 81 242 -50 6 1415 410 65 16 0 chr11 108899388 108899450 -12944406 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1415 617 183 8 17 chr11 108900126 108900243 -12943613 - ID_B1 SINE B4 -11 213 98 6 1415 189 175 0 0 chr11 108900311 108900351 -12943505 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1415 26 0 0 0 chr11 108901828 108901854 -12942002 + AT_rich Low_complexity Low_complexity 1 26 0 6 1415 616 297 121 52 chr11 108902845 108903094 -12940762 + RMER15 LTR ERVL 296 561 -14 6 1415 299 197 33 0 chr11 108903564 108903625 -12940231 + MLT1G3 LTR MaLR 1 63 -532 6 1415 188 35 35 0 chr11 108903635 108903664 -12940192 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6 1415 1198 83 6 0 chr11 108903664 108903821 -12940035 - B2_Mm1a SINE B2 -35 158 1 6 1415 1153 336 43 51 chr11 108903824 108904338 -12939518 + MLT1G3 LTR MaLR 78 587 -8 6 1415 416 304 40 0 chr11 108904577 108904725 -12939131 - MER115 DNA Tip100 -12 681 528 6 1415 183 345 83 41 chr11 108904781 108904902 -12938954 + MIRm SINE MIR 83 208 -68 6 1415 500 279 14 14 chr11 108904941 108905079 -12938777 + L3 LINE CR1 4159 4296 -193 6 1415 634 194 244 0 chr11 108905165 108905345 -12938511 + URR1A DNA MER1_type 3 226 0 6 1415 457 178 437 33 chr11 108905411 108905562 -12938294 + B3 SINE B2 5 216 0 6 1415 200 128 85 0 chr11 108905860 108905907 -12937949 + GA-rich Low_complexity Low_complexity 6 56 0 6 1415 956 268 69 18 chr11 108906532 108906806 -12937050 + B4 SINE B4 2 289 -3 6 1415 1205 55 0 0 chr11 108907236 108907382 -12936474 + B1_Mus2 SINE Alu 2 147 0 6 1415 198 0 0 0 chr11 108907382 108907404 -12936452 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1415 713 281 0 20 chr11 108907532 108907681 -12936175 - RSINE1 SINE B4 0 165 20 6 1415 414 0 0 0 chr11 108907714 108907760 -12936096 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1415 292 270 43 100 chr11 108908143 108908367 -12935489 - Arthur1 DNA Tip100 -41 3906 3642 6 1415 209 33 0 32 chr11 108908371 108908402 -12935454 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 1415 759 162 0 93 chr11 108908402 108908552 -12935304 - ID_B1 SINE B4 -7 217 82 6 1415 999 40 0 0 chr11 108908628 108908752 -12935104 + B1_Mm SINE Alu 14 137 -10 6 1415 288 0 0 0 chr11 108908752 108908784 -12935072 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1415 240 326 192 8 chr11 108908839 108908969 -12934887 - B4 SINE B4 -16 276 123 6 1415 389 319 112 28 chr11 108909121 108909345 -12934511 - MER63C DNA AcHobo -171 759 519 6 1415 360 59 0 0 chr11 108909354 108909405 -12934451 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 1415 641 172 7 0 chr11 108909443 108909594 -12934262 + CT-rich Low_complexity Low_complexity 2 153 0 6 1415 1288 306 53 0 chr11 108909627 108910039 -12933817 - MER63C DNA AcHobo -491 439 6 6 1415 216 0 0 0 chr11 108910129 108910153 -12933703 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1415 233 278 56 0 chr11 108911272 108911344 -12932512 - ID4_ SINE ID -7 76 1 6 1415 200 77 57 19 chr11 108911380 108911433 -12932423 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1415 762 242 30 85 chr11 108911531 108911730 -12932126 - B3 SINE B2 -28 188 1 6 1415 2068 170 35 3 chr11 108911874 108912222 -12931634 - Lx5 LINE L1 -3 7047 6689 6 1415 8566 33 5 1 chr11 108912223 108913534 -12930322 - L1Md_F3 LINE L1 -1 6583 5267 6 1415 23124 146 45 60 chr11 108913525 108918261 -12925595 - Lx5 LINE L1 -357 6693 2056 6 1415 324 102 0 0 chr11 108918261 108918310 -12925546 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1415 23124 148 53 64 chr11 108918310 108919065 -12924791 - Lx5 LINE L1 -3822 2055 1270 6 1415 321 26 0 0 chr11 108919065 108919103 -12924753 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1415 23124 147 221 58 chr11 108919103 108919437 -12924419 - Lx5 LINE L1 -4608 1269 867 6 1415 844 225 53 37 chr11 108919739 108919928 -12923928 + B3A SINE B2 6 197 -1 6 1415 500 294 81 0 chr11 108920277 108920437 -12923419 - MLT1B LTR MaLR -5 385 213 7 1415 536 77 13 0 chr11 108920637 108920715 -12923141 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1416 214 295 0 71 chr11 108921244 108921328 -12922528 - B4 SINE B4 -212 80 3 7 1416 240 299 123 41 chr11 108921328 108921444 -12922412 - Tigger12c DNA MER2_type -605 129 4 7 1416 920 255 5 19 chr11 108921465 108921677 -12922179 - MER58A DNA MER1_type -15 209 1 7 1416 273 287 30 69 chr11 108921748 108921850 -12922006 + MIRm SINE MIR 61 155 -53 7 1416 681 315 48 24 chr11 108921850 108922182 -12921674 + MER102b DNA MER1_type 1 340 -1 7 1416 269 287 30 69 chr11 108922182 108922210 -12921646 + MIR3 SINE MIR 156 186 -22 7 1416 296 24 24 0 chr11 108922742 108922783 -12921073 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1416 235 273 150 10 chr11 108922976 108923076 -12920780 - MIR3 SINE MIR -32 176 63 7 1416 521 286 7 54 chr11 108923199 108923347 -12920509 - Arthur1C DNA Tip100 -204 159 19 7 1416 450 53 0 0 chr11 108923520 108923577 -12920279 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1416 483 69 0 0 chr11 108923577 108923649 -12920207 + (GA)n Simple_repeat Simple_repeat 2 73 0 7 1416 847 174 12 43 chr11 108924516 108924678 -12919178 - URR1B DNA MER1_type -1 224 68 7 1416 763 251 53 0 chr11 108925325 108925496 -12918360 + B4A SINE B4 107 286 -6 7 1416 1229 55 0 0 chr11 108926109 108926254 -12917602 + B1_Mus2 SINE Alu 1 145 -2 7 1416 201 74 0 0 chr11 108926254 108926281 -12917575 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 7 1416 192 152 0 0 chr11 108926283 108926316 -12917540 + A-rich Low_complexity Low_complexity 1 33 0 7 1416 407 378 10 15 chr11 108926556 108926755 -12917101 - Cheshire DNA MER1_type -2167 253 56 7 1416 1184 244 44 5 chr11 108927071 108927349 -12916507 + B4A SINE B4 1 288 -4 7 1416 4172 36 0 35 chr11 108927779 108928293 -12915563 - L1_Mus1 LINE L1 0 6567 6072 7 1416 890 65 0 0 chr11 108928297 108928404 -12915452 - U6 snRNA snRNA 0 107 1 7 1416 192 152 0 0 chr11 108928533 108928566 -12915290 + (TAA)n Simple_repeat Simple_repeat 2 34 0 7 1416 566 292 29 0 chr11 108928612 108928749 -12915107 + RSINE1 SINE B4 3 143 -22 7 1416 1388 86 0 26 chr11 108928836 108929028 -12914828 + B2_Mm2 SINE B2 2 188 -7 7 1416 418 331 115 108 chr11 108929052 108929340 -12914516 - B4A SINE B4 -2 290 1 7 1416 229 204 0 18 chr11 108931098 108931153 -12912703 + G-rich Low_complexity Low_complexity 1 54 0 7 1416 619 122 27 0 chr11 108931476 108931623 -12912233 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 7 1416 354 322 9 43 chr11 108932620 108932827 -12911029 + GA-rich Low_complexity Low_complexity 1 200 0 7 1416 335 180 36 0 chr11 108932827 108932938 -12910918 + (CAGG)n Simple_repeat Simple_repeat 2 116 0 7 1416 241 277 58 35 chr11 108933806 108933892 -12909964 + RLTR22_Mur LTR ERVK 1280 1367 -481 7 1416 730 257 15 66 chr11 108933896 108934092 -12909764 - B4 SINE B4 0 292 107 7 1416 354 301 0 0 chr11 108934977 108935060 -12908796 - ID4_ SINE ID 0 83 1 7 1416 192 200 0 0 chr11 108935170 108935225 -12908631 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1416 728 260 260 17 chr11 108935242 108935312 -12908544 - B4A SINE B4 0 292 199 7 1416 363 60 0 0 chr11 108935312 108935362 -12908494 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 7 1416 728 260 260 17 chr11 108935362 108935526 -12908330 - B4A SINE B4 -94 198 2 7 1416 1219 263 7 24 chr11 108936078 108936374 -12907482 + B4A SINE B4 2 292 0 7 1416 439 239 27 9 chr11 108937195 108937305 -12906551 + B1F SINE Alu 36 147 -2 7 1416 410 185 0 58 chr11 108937320 108937389 -12906467 + ID4 SINE ID 8 72 -11 7 1416 784 142 13 7 chr11 108937399 108937548 -12906308 + GA-rich Low_complexity Low_complexity 1 150 0 7 1416 22 0 0 0 chr11 108937591 108937613 -12906243 + AT_rich Low_complexity Low_complexity 1 22 0 7 1416 302 219 40 14 chr11 108937677 108937751 -12906105 - B4 SINE B4 -214 78 3 7 1416 763 52 0 10 chr11 108938962 108939060 -12904796 + B1_Mur4 SINE Alu 41 137 -13 7 1416 306 0 0 0 chr11 108939060 108939094 -12904762 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 7 1416 455 237 54 0 chr11 108939117 108939210 -12904646 - ID_B1 SINE B4 -20 204 107 7 1416 239 309 43 70 chr11 108939210 108939222 -12904634 + YREP_Mm Unknown Unknown 240 307 -1505 7 1416 748 262 124 8 chr11 108939269 108939511 -12904345 - B4 SINE B4 -22 270 1 7 1416 673 299 39 41 chr11 108940065 108940302 -12903554 - ID_B1 SINE B4 -42 250 10 7 1416 310 211 26 92 chr11 108940826 108940913 -12902943 + ID4 SINE ID 15 96 -56 7 1416 377 286 17 43 chr11 108941208 108941325 -12902531 + MER117 DNA MER1_type 34 147 -50 7 1416 336 357 0 10 chr11 108941663 108941762 -12902094 - MER91A DNA Tip100 -84 112 15 7 1416 198 0 0 0 chr11 108941790 108941812 -12902044 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1416 554 279 6 55 chr11 108943931 108944094 -12899762 - RSINE1 SINE B4 0 165 11 7 1416 194 265 18 101 chr11 108944107 108944216 -12899640 - L3 LINE CR1 -1208 3281 3182 7 1416 486 70 0 0 chr11 108944218 108944289 -12899567 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1416 1104 133 0 0 chr11 108944699 108944879 -12898977 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 1416 242 356 82 41 chr11 108945799 108946314 -12897542 + L1M5 LINE L1 4689 5224 -922 7 1416 386 269 0 28 chr11 108946447 108946554 -12897302 - MER53 DNA hAT -89 104 1 7 1416 308 329 48 35 chr11 108946722 108946867 -12896989 - MIRc SINE MIR -120 148 2 7 1416 358 271 0 23 chr11 108947123 108947297 -12896559 + (TATG)n Simple_repeat Simple_repeat 4 173 0 7 1416 858 305 18 0 chr11 108947340 108947619 -12896237 - B4A SINE B4 -8 284 1 7 1416 474 251 45 49 chr11 108947971 108948203 -12895653 - MTEb LTR MaLR 0 379 130 7 1416 749 313 20 15 chr11 108948456 108948660 -12895196 + B4 SINE B4 1 205 -87 7 1416 417 39 0 0 chr11 108948670 108948721 -12895135 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1416 270 0 0 0 chr11 108948751 108948781 -12895075 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1416 519 45 0 0 chr11 108948781 108948846 -12895010 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1416 186 71 0 0 chr11 108948849 108948877 -12894979 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 7 1416 1100 131 134 15 chr11 108948909 108949111 -12894745 + URR1A DNA MER1_type 1 226 0 7 1416 825 298 75 61 chr11 108949253 108949682 -12894174 + Charlie4a DNA MER1_type 74 508 0 7 1416 230 256 12 71 chr11 108949877 108949961 -12893895 - ID4 SINE ID -1 82 4 7 1416 45 0 0 0 chr11 108950538 108950583 -12893273 + AT_rich Low_complexity Low_complexity 1 45 0 7 1416 241 312 28 99 chr11 108950722 108950816 -12893040 - MLT1A LTR MaLR -7 401 321 7 1416 1552 147 29 82 chr11 108950816 108951156 -12892700 - RLTRETN_Mm LTR ERVK 0 322 1 7 1416 241 312 28 99 chr11 108951156 108951203 -12892653 - MLT1A LTR MaLR -88 320 270 7 1416 331 307 29 66 chr11 108951243 108951379 -12892477 - MLT1A LTR MaLR -212 162 32 7 1416 356 111 16 0 chr11 108951426 108951489 -12892367 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1416 465 99 0 0 chr11 108951489 108951570 -12892286 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 1416 499 308 25 71 chr11 108951570 108951629 -12892227 - B4 SINE B4 -19 273 214 7 1416 186 43 0 0 chr11 108951629 108951652 -12892204 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 7 1416 499 308 25 71 chr11 108951652 108951788 -12892068 - B4 SINE B4 -79 213 87 7 1416 345 342 47 57 chr11 108952012 108952223 -12891633 - MER20 DNA MER1_type -7 212 4 7 1416 237 266 0 59 chr11 108952331 108952399 -12891457 + ID4 SINE ID 5 68 -15 7 1416 378 91 0 0 chr11 108952499 108952554 -12891302 + (TCC)n Simple_repeat Simple_repeat 3 57 0 7 1416 312 164 0 0 chr11 108952608 108952675 -12891181 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1416 739 219 164 78 chr11 108952680 108952948 -12890908 - B4A SINE B4 0 292 2 7 1416 639 0 0 0 chr11 108953155 108953226 -12890630 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 1416 360 328 111 98 chr11 108954395 108954774 -12889082 - MLT1A1 LTR MaLR -22 386 3 7 1416 362 369 76 82 chr11 108954826 108955299 -12888557 - MLT1K LTR MaLR -99 496 27 7 1416 282 289 0 0 chr11 108956263 108956339 -12887517 - L1M4 LINE L1 -316 5858 5783 7 1416 299 298 152 8 chr11 108956846 108956971 -12886885 + B1F1 SINE Alu 1 143 -6 7 1416 609 270 120 62 chr11 108956986 108957262 -12886594 + B4A SINE B4 1 292 0 7 1416 719 150 35 6 chr11 108957489 108957511 -12886345 + polypyrimidine Low_complexity Low_complexity 157 180 0 7 1416 1189 61 0 27 chr11 108957511 108957696 -12886160 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 7 1416 719 150 35 6 chr11 108957696 108957847 -12886009 + CT-rich Low_complexity Low_complexity 2 156 0 7 1416 319 262 57 0 chr11 108957847 108957988 -12885868 + (TCTG)n Simple_repeat Simple_repeat 4 152 0 7 1416 270 386 30 0 chr11 108958038 108958139 -12885717 + MamRep1879 DNA hAT? 3 106 -110 7 1416 242 338 146 14 chr11 108958665 108958809 -12885047 + MIR3 SINE MIR 10 172 -36 7 1416 250 45 0 43 chr11 108959071 108959117 -12884739 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1416 224 204 0 39 chr11 108959805 108959856 -12884000 + GA-rich Low_complexity Low_complexity 6 54 0 7 1416 734 270 20 20 chr11 108959858 108960062 -12883794 + L1_Mur3 LINE L1 5341 5544 -336 7 1416 229 200 14 130 chr11 108960066 108960135 -12883721 + MamGypLTR2c LTR Gypsy 345 405 -663 7 1416 825 261 45 0 chr11 108960135 108960357 -12883499 + L1MA4 LINE L1 5696 5927 -373 7 1416 916 275 5 0 chr11 108960393 108960593 -12883263 + ID_B1 SINE B4 17 217 -7 7 1416 431 262 6 0 chr11 108960593 108960765 -12883091 + (TG)n Simple_repeat Simple_repeat 2 174 0 7 1416 201 221 0 0 chr11 108960797 108960891 -12882965 + (TG)n Simple_repeat Simple_repeat 1 94 0 7 1416 328 143 92 31 chr11 108960894 108960959 -12882897 - HAL1-3A_ME LINE L1 -847 2011 1943 8 1416 498 292 29 7 chr11 108961414 108961552 -12882304 - RSINE1 SINE B4 -23 142 2 8 1416 1007 284 58 25 chr11 108961552 108962122 -12881734 - L1M2 LINE L1 -690 5607 5004 8 1416 1296 69 11 44 chr11 108962653 108962836 -12881020 + B2_Mm1t SINE B2 3 179 -14 8 1416 477 83 324 27 chr11 108962845 108962956 -12880900 + B2_Mm2 SINE B2 47 190 -5 8 1416 246 128 0 0 chr11 108963490 108963529 -12880327 + (TGG)n Simple_repeat Simple_repeat 1 39 0 8 1416 538 223 66 0 chr11 108963548 108963669 -12880187 - RSINE1 SINE B4 -29 136 8 8 1416 1118 214 15 5 chr11 108963699 108963901 -12879955 + B3 SINE B2 13 216 0 8 1416 35 41 0 0 chr11 108963906 108963955 -12879901 + AT_rich Low_complexity Low_complexity 1 49 0 8 1416 273 351 23 0 chr11 108964063 108964194 -12879662 - L1M5 LINE L1 -538 5702 5569 8 1416 423 0 0 0 chr11 108964322 108964369 -12879487 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1416 264 185 175 52 chr11 108964474 108964571 -12879285 - PB1D10 SINE Alu -8 109 1 8 1416 327 295 133 9 chr11 108964636 108964749 -12879107 - RSINE1 SINE B4 -38 127 1 8 1416 787 304 37 74 chr11 108964921 108964998 -12878858 + MER2 DNA MER2_type 4 68 -277 8 1416 506 295 67 92 chr11 108964998 108965282 -12878574 - B4 SINE B4 -14 278 2 8 1416 787 304 37 74 chr11 108965282 108965556 -12878300 + MER2 DNA MER2_type 69 342 -3 8 1416 849 308 85 4 chr11 108966085 108966333 -12877523 - B4A SINE B4 -24 268 1 8 1416 652 252 14 7 chr11 108966340 108966488 -12877368 - ID_B1 SINE B4 -2 222 74 8 1416 198 399 0 22 chr11 108966633 108966769 -12877087 - MIRb SINE MIR -35 233 101 8 1416 340 272 69 17 chr11 108966906 108967022 -12876834 + PB1 SINE Alu 3 124 -3 8 1416 654 257 41 18 chr11 108967051 108967221 -12876635 + B4A SINE B4 118 291 -1 8 1416 693 146 0 0 chr11 108967316 108967439 -12876417 + (CA)n Simple_repeat Simple_repeat 1 123 0 8 1416 219 154 0 0 chr11 108967992 108968031 -12875825 + T-rich Low_complexity Low_complexity 2 40 0 8 1416 304 286 98 0 chr11 108968612 108968724 -12875132 - HAL1-2a_MD LINE L1 -2074 950 828 8 1416 649 277 100 100 chr11 108969380 108969661 -12874195 - B4A SINE B4 -8 284 4 8 1416 518 251 18 35 chr11 108969958 108970127 -12873729 + L1MC1 LINE L1 5806 5971 -362 8 1416 930 290 17 41 chr11 108970151 108970442 -12873414 + B4A SINE B4 5 288 -4 8 1416 699 99 45 23 chr11 108970450 108970626 -12873230 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1416 834 75 34 28 chr11 108970638 108970816 -12873040 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1416 481 281 94 30 chr11 108971108 108971310 -12872546 + L1MC1 LINE L1 6121 6335 -9 8 1416 362 295 57 10 chr11 108971650 108971760 -12872096 - PB1D7 SINE Alu -9 118 3 8 1416 372 284 72 157 chr11 108971829 108972052 -12871804 - B4 SINE B4 0 292 97 8 1416 946 235 59 0 chr11 108972052 108972256 -12871600 - B3 SINE B2 0 216 1 8 1416 372 284 72 157 chr11 108972256 108972350 -12871506 - B4 SINE B4 -196 96 2 8 1416 186 43 0 0 chr11 108973934 108973957 -12869899 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1416 535 312 82 84 chr11 108974311 108974403 -12869453 + L1MA5A LINE L1 5395 5493 -663 8 1416 700 208 128 27 chr11 108974403 108974559 -12869297 + B3 SINE B2 4 168 -48 8 1416 315 0 0 0 chr11 108974559 108974594 -12869262 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1416 700 208 128 27 chr11 108974594 108974625 -12869231 + B3 SINE B2 169 210 -6 8 1416 758 306 80 13 chr11 108974625 108974970 -12868886 + L1MA5A LINE L1 5476 5831 -325 8 1416 561 172 55 40 chr11 108975177 108975323 -12868533 + ORR1D1 LTR MaLR 1 140 -254 8 1416 327 182 0 56 chr11 108975324 108975423 -12868433 + ORR1B2 LTR MaLR 44 141 -253 8 1416 1466 165 67 50 chr11 108975413 108975648 -12868208 + ORR1C2 LTR MaLR 9 245 -149 8 1416 1307 18 6 17 chr11 108975648 108975821 -12868035 + (CCTG)n Simple_repeat Simple_repeat 4 174 0 8 1416 1466 148 63 49 chr11 108975821 108975953 -12867903 + ORR1C2 LTR MaLR 235 382 -2 8 1416 450 0 0 0 chr11 108976020 108976070 -12867786 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1416 1562 201 149 6 chr11 108976119 108976474 -12867382 - MTD LTR MaLR 0 419 14 8 1416 314 312 26 46 chr11 108978573 108978724 -12865132 + CYRA11_Mm Unknown Y-chromosome 160 307 -310 8 1416 924 159 162 11 chr11 108978592 108978783 -12865073 - URR1A DNA MER1_type -6 220 1 8 1416 616 238 7 37 chr11 108979367 108979502 -12864354 - RSINE1 SINE B4 -4 161 31 8 1416 248 290 14 0 chr11 108979565 108979634 -12864222 - L1M5 LINE L1 -974 5470 5401 8 1416 686 269 37 16 chr11 108980109 108980298 -12863558 + B3A SINE B2 1 193 -5 8 1416 1944 185 91 28 chr11 108981013 108981407 -12862449 - MTD LTR MaLR 0 419 1 8 1416 242 279 22 34 chr11 108981561 108981650 -12862206 + MTE2a LTR MaLR 278 365 -14 8 1416 642 104 0 0 chr11 108981677 108981773 -12862083 + (TG)n Simple_repeat Simple_repeat 2 97 0 8 1416 773 300 118 16 chr11 108981776 108982030 -12861826 - B4A SINE B4 -10 282 3 8 1416 8868 52 5 3 chr11 108982040 108983836 -12860020 - L1Md_F2 LINE L1 0 6582 4783 8 1416 372 319 100 54 chr11 108983869 108984045 -12859811 - L1MD LINE L1 -1431 4715 4529 8 1416 2181 163 73 8 chr11 108984045 108984440 -12859416 + MTC LTR MaLR 1 421 0 8 1416 372 319 100 54 chr11 108984440 108984594 -12859262 - L1MD LINE L1 -1618 4528 4370 8 1416 471 18 0 0 chr11 108984614 108984670 -12859186 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1416 350 369 37 42 chr11 108984673 108984888 -12858968 - B4A SINE B4 -78 214 1 8 1416 1193 165 30 52 chr11 108984893 108984968 -12858888 + URR1B DNA MER1_type 1 80 -145 8 1416 348 24 0 0 chr11 108984968 108985009 -12858847 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1416 1193 165 30 52 chr11 108985009 108985163 -12858693 + URR1B DNA MER1_type 81 225 0 8 1416 689 244 0 75 chr11 108985674 108985903 -12857953 + B3A SINE B2 1 203 -13 8 1416 297 207 0 0 chr11 108985903 108985990 -12857866 + (CA)n Simple_repeat Simple_repeat 1 87 0 8 1416 327 223 20 0 chr11 108986071 108986219 -12857637 + (CA)n Simple_repeat Simple_repeat 2 152 0 8 1416 798 270 45 34 chr11 108986236 108986593 -12857263 - L1M5 LINE L1 -2406 3740 3380 8 1416 209 224 10 150 chr11 108986633 108986733 -12857123 + MIRm SINE MIR 180 265 -11 8 1416 275 278 236 8 chr11 108986747 108986874 -12856982 - MIRc SINE MIR -98 170 15 8 1416 450 0 0 0 chr11 108988030 108988080 -12855776 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1416 466 282 169 28 chr11 108988297 108988429 -12855427 - B4 SINE B4 -1 291 126 8 1416 999 48 0 0 chr11 108988429 108988554 -12855302 + (TC)n Simple_repeat Simple_repeat 1 125 0 8 1416 466 282 169 28 chr11 108988554 108988676 -12855180 - B4 SINE B4 -167 125 2 8 1416 387 274 32 16 chr11 108989142 108989268 -12854588 - L1MC3 LINE L1 0 7785 7658 8 1416 291 250 25 0 chr11 108989341 108989421 -12854435 - ID4 SINE ID 0 83 2 8 1416 351 228 84 152 chr11 108989551 108989742 -12854114 - MLT1A0 LTR MaLR -186 179 2 8 1416 435 38 0 0 chr11 108990020 108990073 -12853783 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1416 1044 242 20 34 chr11 108990194 108990489 -12853367 + B4A SINE B4 2 292 0 8 1416 321 227 97 0 chr11 108990635 108990721 -12853135 - PB1D7 SINE Alu -14 106 1 8 1416 288 0 0 0 chr11 108990804 108990836 -12853020 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1416 1831 273 30 0 chr11 108991005 108991474 -12852382 + Lx8 LINE L1 6852 7334 -139 8 1416 2616 164 57 27 chr11 108991621 108992134 -12851722 + RLTR12B LTR ERVK 1 528 0 8 1416 553 213 189 0 chr11 108992374 108992501 -12851355 - MTD LTR MaLR -226 193 43 8 1416 371 243 66 28 chr11 108992531 108992637 -12851219 - MER2 DNA MER2_type -109 236 127 8 1416 513 254 171 11 chr11 108992763 108992950 -12850906 - Lx8 LINE L1 -1 7472 7256 8 1416 253 250 19 0 chr11 108992988 108993040 -12850816 - MER2 DNA MER2_type -281 64 12 8 1416 278 254 55 47 chr11 108993044 108993073 -12850783 + Charlie23a DNA MER1_type 93 126 -213 8 1416 1351 61 55 0 chr11 108993073 108993254 -12850602 - B2_Mm2 SINE B2 -2 193 3 8 1416 278 254 55 47 chr11 108993254 108993352 -12850504 + Charlie23a DNA MER1_type 127 221 -118 8 1416 935 265 5 9 chr11 108993639 108993856 -12850000 - B3 SINE B2 0 216 1 8 1416 3140 74 5 15 chr11 108993900 108994311 -12849545 - MTB_Mm LTR MaLR 0 407 1 8 1416 365 257 18 158 chr11 108994739 108994881 -12848975 - L1ME1 LINE L1 -174 6005 5884 8 1416 919 120 221 33 chr11 108994881 108995062 -12848794 - B3 SINE B2 0 216 2 8 1416 365 257 18 158 chr11 108995062 108995141 -12848715 - L1ME1 LINE L1 -296 5883 5815 8 1416 504 257 18 0 chr11 108995381 108995490 -12848366 - PB1D7 SINE Alu -7 113 3 8 1416 359 384 53 0 chr11 108995832 108995965 -12847891 + MLT1J LTR MaLR 71 210 -302 8 1416 633 152 19 0 chr11 108995998 108996103 -12847753 - B1_Mur4 SINE Alu -1 149 43 8 1416 693 165 0 0 chr11 108996106 108996257 -12847599 + (TCTCTG)n Simple_repeat Simple_repeat 1 151 0 8 1416 320 89 33 82 chr11 108996257 108996318 -12847538 - B1_Mus2 SINE Alu -88 59 2 8 1416 460 236 160 0 chr11 108996461 108996567 -12847289 + B1_Mur1 SINE Alu 13 135 -14 8 1416 386 212 10 0 chr11 108996567 108996666 -12847190 + GA-rich Low_complexity Low_complexity 3 102 0 8 1416 774 278 136 8 chr11 108996728 108996964 -12846892 - Tigger7 DNA MER2_type -2204 287 22 8 1416 261 261 748 0 chr11 108997253 108997364 -12846492 - RMER30 DNA MER1_type -1 201 8 8 1416 279 333 91 38 chr11 108997367 108997576 -12846280 - MIRb SINE MIR -34 234 15 8 1416 233 0 62 0 chr11 108997872 108997904 -12845952 + (TAAAAA)n Simple_repeat Simple_repeat 6 39 0 8 1416 1045 254 72 8 chr11 108998265 108998515 -12845341 + B4A SINE B4 1 266 -26 8 1416 291 54 0 0 chr11 108998523 108998560 -12845296 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1416 188 67 0 32 chr11 108998562 108998593 -12845263 + (ATG)n Simple_repeat Simple_repeat 2 31 0 8 1416 357 62 0 0 chr11 108999171 108999219 -12844637 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1416 1267 242 10 14 chr11 108999236 108999525 -12844331 - B4 SINE B4 -4 288 1 8 1416 325 196 0 0 chr11 108999856 108999907 -12843949 + MTEa LTR MaLR 275 325 -54 8 1416 378 127 0 0 chr11 108999921 108999992 -12843864 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 8 1416 870 279 6 44 chr11 109000058 109000416 -12843440 + L1MB3 LINE L1 5676 6019 -325 1 1416 901 140 12 0 chr11 109000417 109000581 -12843275 + GA-rich Low_complexity Low_complexity 3 168 0 2 1416 727 313 130 11 chr11 109001731 109002015 -12841841 - MER2 DNA MER2_type -27 318 1 3 1416 939 23 44 33 chr11 109002177 109002458 -12841398 + (TCTA)n Simple_repeat Simple_repeat 1 284 0 4 1416 219 240 20 0 chr11 109002470 109002520 -12841336 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1416 957 266 14 35 chr11 109002531 109002815 -12841041 - B4A SINE B4 -13 279 2 6 1416 281 286 32 42 chr11 109002920 109002940 -12840916 - ID_B1 SINE B4 -128 96 3 7 1416 293 229 13 67 chr11 109002940 109003015 -12840841 - ID4 SINE ID -10 73 3 8 1416 1187 301 112 35 chr11 109003264 109003771 -12840085 - MLT1F LTR MaLR 0 548 3 9 1416 310 310 124 37 chr11 109003987 109004148 -12839708 - L1M4b LINE L1 -5392 1942 1768 1 1416 432 0 0 0 chr11 109004149 109004197 -12839659 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1416 467 286 24 32 chr11 109004197 109004320 -12839536 - B1F SINE Alu -22 127 6 1 1416 1070 116 0 0 chr11 109004804 109004950 -12838906 - B1_Mm SINE Alu -1 146 1 1 1416 424 352 80 0 chr11 109005845 109006021 -12837835 - L3 LINE CR1 -800 3689 3500 1 1416 293 286 123 123 chr11 109006026 109006237 -12837619 + Charlie8 DNA MER1_type 1 211 -2217 1 1416 312 340 96 25 chr11 109006374 109006531 -12837325 - L3 LINE CR1 -963 3526 3359 1 1416 21 0 0 0 chr11 109008671 109008692 -12835164 + AT_rich Low_complexity Low_complexity 1 21 0 1 1416 327 285 107 65 chr11 109008752 109008921 -12834935 - ORR1D2 LTR MaLR -22 348 173 1 1416 1367 279 11 29 chr11 109009131 109009508 -12834348 - ORR1D2 LTR MaLR 0 370 1 1 1416 410 266 112 43 chr11 109009562 109009723 -12834133 + MLT1B LTR MaLR 4 175 -215 1 1416 234 229 0 3 chr11 109009748 109009799 -12834057 + B1F SINE Alu 71 141 -8 2 1416 378 107 0 0 chr11 109009799 109009855 -12834001 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 1416 880 217 88 10 chr11 109009863 109010068 -12833788 + ID_B1 SINE B4 2 222 -2 2 1416 189 0 0 0 chr11 109010141 109010162 -12833694 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1416 597 248 60 18 chr11 109010162 109010330 -12833526 + MLT1B LTR MaLR 205 379 -11 1 1416 390 42 0 0 chr11 109010657 109010705 -12833151 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1416 3469 133 14 32 chr11 109011319 109011880 -12831976 - Lx2B LINE L1 0 7000 6450 2 1416 327 146 0 0 chr11 109012018 109012073 -12831783 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 2 1416 4900 147 56 38 chr11 109012078 109013018 -12830838 + RMER17B LTR ERVK 2 958 0 2 1416 633 90 0 0 chr11 109013028 109013117 -12830739 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1416 212 269 75 0 chr11 109013166 109013233 -12830623 + MIRb SINE MIR 197 268 0 2 1416 509 215 124 26 chr11 109013493 109013646 -12830210 + MTE2a LTR MaLR 210 377 -2 3 1416 523 62 25 0 chr11 109014096 109014176 -12829680 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1416 607 276 18 12 chr11 109014178 109014343 -12829513 - B3A SINE B2 -31 167 2 3 1416 28 0 0 0 chr11 109014945 109014973 -12828883 + AT_rich Low_complexity Low_complexity 1 28 0 3 1416 252 0 0 0 chr11 109015315 109015343 -12828513 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1416 365 320 132 13 chr11 109015700 109015852 -12828004 + MER20 DNA MER1_type 8 177 -42 3 1416 216 0 0 0 chr11 109016282 109016306 -12827550 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1416 738 258 45 45 chr11 109016306 109016529 -12827327 + B4 SINE B4 19 241 -51 3 1416 368 386 5 52 chr11 109016652 109016846 -12827010 + MamRep38 DNA hAT 38 222 -73 3 1416 503 339 80 28 chr11 109016868 109017156 -12826700 + MER2 DNA MER2_type 42 344 -1 3 1416 286 175 0 17 chr11 109017302 109017360 -12826496 - ORR1E LTR MaLR 0 379 323 4 1416 402 300 184 7 chr11 109017371 109017512 -12826344 + ID_B1 SINE B4 1 166 -58 4 1416 232 306 0 0 chr11 109017514 109017576 -12826280 + GA-rich Low_complexity Low_complexity 2 63 0 4 1416 1851 218 75 5 chr11 109017685 109018059 -12825797 - MTD LTR MaLR 0 419 20 4 1416 608 233 18 54 chr11 109018098 109018266 -12825590 - ORR1E LTR MaLR -196 163 2 4 1416 246 156 0 0 chr11 109018301 109018346 -12825510 + (GCATG)n Simple_repeat Simple_repeat 3 47 0 4 1416 651 26 0 0 chr11 109018989 109019066 -12824790 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1416 203 299 63 25 chr11 109019733 109019812 -12824044 + MIR SINE MIR 97 178 -84 4 1416 572 232 0 18 chr11 109019841 109019955 -12823901 + PB1D10 SINE Alu 1 112 -5 4 1416 421 327 9 0 chr11 109020055 109020162 -12823694 + RSINE1 SINE B4 39 146 -19 4 1416 218 264 175 31 chr11 109022076 109022236 -12821620 + L2b LINE L2 2955 3137 -238 4 1416 477 189 180 0 chr11 109022406 109022517 -12821339 - ID_B1 SINE B4 -9 215 85 5 1416 191 273 0 52 chr11 109022579 109022637 -12821219 + MIR SINE MIR 93 147 -61 5 1416 292 249 103 56 chr11 109023016 109023380 -12820476 - RLTR11A LTR ERVK -50 478 39 5 1416 720 169 9 0 chr11 109023693 109024035 -12819821 + (CA)n Simple_repeat Simple_repeat 1 345 0 5 1416 415 201 7 7 chr11 109024055 109024205 -12819651 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 1416 714 141 0 0 chr11 109024208 109024350 -12819506 + (TC)n Simple_repeat Simple_repeat 1 142 0 5 1416 213 65 0 0 chr11 109024863 109024894 -12818962 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1416 913 279 69 11 chr11 109025863 109026138 -12817718 + B4A SINE B4 2 292 0 5 1416 297 0 0 0 chr11 109026152 109026185 -12817671 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1416 1238 18 31 10 chr11 109026315 109026705 -12817151 + (TAGA)n Simple_repeat Simple_repeat 1 398 0 5 1416 992 101 0 22 chr11 109026705 109026832 -12817024 + (TGGA)n Simple_repeat Simple_repeat 3 128 0 5 1416 1498 20 6 14 chr11 109026832 109027014 -12816842 + (TAGA)n Simple_repeat Simple_repeat 1 182 -470 6 1416 992 101 0 22 chr11 109027014 109027021 -12816835 + (TGGA)n Simple_repeat Simple_repeat 1 6 0 6 1416 1498 20 6 14 chr11 109027021 109027490 -12816366 + (TAGA)n Simple_repeat Simple_repeat 183 652 0 6 1416 992 101 0 22 chr11 109027490 109027534 -12816322 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 6 1416 212 62 31 0 chr11 109027534 109027566 -12816290 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 6 1416 860 302 8 39 chr11 109027618 109027873 -12815983 + B4 SINE B4 46 292 0 6 1416 417 151 0 0 chr11 109028011 109028097 -12815759 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1416 555 232 143 19 chr11 109028145 109028299 -12815557 - B4A SINE B4 -18 274 102 6 1416 720 0 0 0 chr11 109028304 109028384 -12815472 + (CCCCCT)n Simple_repeat Simple_repeat 1 80 0 6 1416 777 51 0 0 chr11 109028384 109028481 -12815375 + (TTC)n Simple_repeat Simple_repeat 1 98 0 6 1416 203 222 31 16 chr11 109028483 109028547 -12815309 + GA-rich Low_complexity Low_complexity 1 65 0 6 1416 24 0 0 0 chr11 109028574 109028598 -12815258 + AT_rich Low_complexity Low_complexity 1 24 0 7 1416 1338 84 26 0 chr11 109028609 109028799 -12815057 + B2_Mm2 SINE B2 1 195 0 7 1416 225 349 0 0 chr11 109028859 109028925 -12814931 - B4A SINE B4 -226 66 1 7 1416 453 258 15 82 chr11 109029180 109029315 -12814541 + B4A SINE B4 3 128 -164 7 1416 350 340 97 101 chr11 109029291 109029549 -12814307 + B4 SINE B4 30 286 -6 7 1416 28 29 0 0 chr11 109030835 109030870 -12812986 + AT_rich Low_complexity Low_complexity 1 35 0 7 1416 1012 257 26 60 chr11 109031521 109031823 -12812033 + B4A SINE B4 1 292 0 7 1416 1275 86 0 0 chr11 109031833 109032054 -12811802 + (CA)n Simple_repeat Simple_repeat 1 221 0 7 1416 324 0 0 0 chr11 109032765 109032801 -12811055 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1416 602 261 54 221 chr11 109032831 109033180 -12810676 - B4 SINE B4 0 292 2 7 1416 282 247 38 38 chr11 109033207 109033287 -12810569 + MLT1A LTR MaLR 276 355 -19 8 1416 651 240 75 25 chr11 109033613 109033814 -12810042 + B3 SINE B2 1 211 -5 8 1416 37 69 0 0 chr11 109034181 109034253 -12809603 + AT_rich Low_complexity Low_complexity 1 72 0 8 1416 207 310 0 0 chr11 109034587 109034645 -12809211 + CT-rich Low_complexity Low_complexity 4 61 0 8 1416 825 243 19 19 chr11 109035789 109036003 -12807853 - MLT1B LTR MaLR -5 385 172 8 1416 461 211 134 9 chr11 109036131 109036243 -12807613 + ID_B1 SINE B4 77 195 -29 8 1416 419 222 34 77 chr11 109036149 109036266 -12807590 + PB1D10 SINE Alu 6 117 0 8 1416 439 322 7 0 chr11 109036654 109036797 -12807059 - L3b LINE CR1 -338 4170 4027 8 1416 342 359 40 20 chr11 109037430 109037632 -12806224 - L3b LINE CR1 -693 3796 3591 8 1416 854 186 0 14 chr11 109038142 109038289 -12805567 + B1_Mur1 SINE Alu 5 149 0 8 1416 531 283 0 61 chr11 109038318 109038465 -12805391 + RSINE1 SINE B4 11 148 -17 8 1416 195 129 0 0 chr11 109038473 109038504 -12805352 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1416 204 219 0 0 chr11 109038810 109038851 -12805005 + (ATGGTG)n Simple_repeat Simple_repeat 1 41 0 9 1416 234 0 0 0 chr11 109038851 109038877 -12804979 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1416 272 277 124 38 chr11 109038913 109039018 -12804838 - RSINE1 SINE B4 -48 117 4 9 1416 372 246 136 14 chr11 109039887 109040027 -12803829 - MIRb SINE MIR -71 197 41 9 1416 621 66 0 0 chr11 109040737 109040828 -12803028 + (TC)n Simple_repeat Simple_repeat 2 92 0 9 1416 507 310 87 17 chr11 109041249 109041479 -12802377 - MER33 DNA MER1_type -61 263 18 9 1416 201 339 0 0 chr11 109041974 109042033 -12801823 - MER91B DNA Tip100 -126 64 6 9 1416 496 312 7 71 chr11 109042242 109042397 -12801459 + RSINE1 SINE B4 8 152 -13 9 1416 495 112 0 0 chr11 109042405 109042485 -12801371 + (CA)n Simple_repeat Simple_repeat 2 81 0 9 1416 313 227 51 60 chr11 109042827 109042944 -12800912 + PB1D10 SINE Alu 2 117 0 1 1416 270 359 42 36 chr11 109042982 109043147 -12800709 + MIR SINE MIR 96 261 -1 1 1416 310 202 107 39 chr11 109043273 109043376 -12800480 - LTR16D1 LTR ERVL -12 663 554 1 1416 436 210 0 12 chr11 109043571 109043653 -12800203 + B4A SINE B4 15 95 -197 1 1416 213 139 0 27 chr11 109043658 109043695 -12800161 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1416 249 57 0 0 chr11 109043697 109043732 -12800124 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1416 432 0 0 0 chr11 109043773 109043821 -12800035 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1416 407 35 18 0 chr11 109043825 109043882 -12799974 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1416 1367 248 72 0 chr11 109044181 109044385 -12799471 + MTD LTR MaLR 48 261 -158 1 1416 2836 28 0 41 chr11 109044385 109044726 -12799130 + IAPLTR2b LTR ERVK 1 327 0 1 1416 1367 248 72 0 chr11 109044726 109044868 -12798988 + MTD LTR MaLR 262 418 -1 1 1416 451 298 111 54 chr11 109045018 109045388 -12798468 - MLT1C LTR MaLR -8 382 6 1 1416 521 293 90 35 chr11 109046702 109046847 -12797009 + B4 SINE B4 26 178 -114 1 1416 1161 131 136 0 chr11 109046850 109047049 -12796807 - URR1A DNA MER1_type 0 226 1 1 1416 1802 170 9 3 chr11 109047083 109047407 -12796449 + Lx4B LINE L1 6233 6558 -500 1 1416 234 257 46 99 chr11 109047407 109047535 -12796321 + RSINE1 SINE B4 90 292 0 1 1416 513 232 0 0 chr11 109047535 109047677 -12796179 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1416 261 83 0 0 chr11 109047738 109047774 -12796082 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1 1416 223 359 114 31 chr11 109047774 109048133 -12795723 - L2a LINE L2 -13 3413 3025 1 1416 757 309 87 7 chr11 109048510 109048787 -12795069 + MLT1C LTR MaLR 169 467 0 1 1416 259 368 75 27 chr11 109048793 109048980 -12794876 + MIRc SINE MIR 9 204 -64 1 1416 485 294 11 28 chr11 109049824 109050006 -12793850 + L1M4 LINE L1 2377 2555 -3591 1 1416 986 276 72 27 chr11 109050032 109050363 -12793493 + ORR1E LTR MaLR 2 347 -12 1 1416 2908 278 97 74 chr11 109050383 109051461 -12792395 + ORR1E-int LTR MaLR 7 1105 -404 1 1416 748 103 22 39 chr11 109051581 109051763 -12792093 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 1 1416 246 189 81 0 chr11 109051818 109051892 -12791964 + L1MA10 LINE L1 6242 6321 -13 1 1417 375 125 0 0 chr11 109052052 109052124 -12791732 + (TTGG)n Simple_repeat Simple_repeat 4 75 0 1 1417 439 261 4 11 chr11 109052126 109052225 -12791631 - PB1D10 SINE Alu -8 112 12 1 1417 1218 68 0 0 chr11 109052403 109052549 -12791307 - B1_Mus2 SINE Alu 0 147 2 1 1417 660 199 47 60 chr11 109052801 109052951 -12790905 + B1F SINE Alu 1 148 -1 1 1417 944 288 54 42 chr11 109052964 109053370 -12790486 + L1MB3 LINE L1 5770 6180 -3 1 1417 288 0 0 0 chr11 109053421 109053453 -12790403 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 1 1417 232 304 0 0 chr11 109053509 109053565 -12790291 - RSINE1 SINE B4 -85 80 25 1 1417 264 210 164 24 chr11 109054044 109054199 -12789657 + MIRc SINE MIR 29 202 -66 1 1417 295 78 39 0 chr11 109054930 109054981 -12788875 + (GGGAGA)n Simple_repeat Simple_repeat 3 55 0 1 1417 347 298 32 0 chr11 109055063 109055157 -12788699 + B4A SINE B4 1 97 -195 1 1417 217 370 51 70 chr11 109055159 109055316 -12788540 + B4 SINE B4 66 219 -73 1 1417 234 0 0 0 chr11 109055416 109055442 -12788414 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1417 411 21 0 0 chr11 109055925 109055973 -12787883 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1417 1306 215 91 29 chr11 109056123 109056473 -12787383 + MTE2a LTR MaLR 2 373 -6 1 1417 677 229 141 55 chr11 109056755 109056968 -12786888 - RLTR15 LTR ERVK -36 323 112 1 1417 495 0 0 0 chr11 109056968 109057023 -12786833 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1417 677 229 141 55 chr11 109057023 109057100 -12786756 - RLTR15 LTR ERVK -248 111 10 1 1417 271 222 92 92 chr11 109057304 109057423 -12786433 + B4 SINE B4 168 286 -6 1 1417 234 128 0 0 chr11 109057467 109057506 -12786350 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 1 1417 1618 140 39 113 chr11 109057786 109058141 -12785715 + ORR1A4 LTR MaLR 1 329 0 1 1417 458 290 162 11 chr11 109058141 109058413 -12785443 - L1MB7 LINE L1 -41 6143 5831 1 1417 594 60 0 0 chr11 109058422 109058505 -12785351 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1417 396 0 0 0 chr11 109058505 109058548 -12785308 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1417 460 217 0 0 chr11 109058665 109058748 -12785108 - B4A SINE B4 -208 84 2 1 1417 1003 245 34 138 chr11 109059413 109059825 -12784031 - MTE2a LTR MaLR -10 369 1 1 1417 692 266 138 12 chr11 109060017 109060264 -12783592 - B4A SINE B4 -13 279 2 1 1417 525 175 0 0 chr11 109060686 109060823 -12783033 + GA-rich Low_complexity Low_complexity 2 138 0 1 1417 181 175 55 55 chr11 109061556 109061683 -12782173 + GA-rich Low_complexity Low_complexity 1 127 0 1 1417 1105 256 75 46 chr11 109061715 109062063 -12781793 - MTEa LTR MaLR -17 362 5 1 1417 428 0 19 0 chr11 109062499 109062551 -12781305 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1417 817 294 110 15 chr11 109062680 109063008 -12780848 + MLT1A0 LTR MaLR 7 365 0 1 1417 306 333 95 0 chr11 109063255 109063381 -12780475 - MLT1K LTR MaLR 0 595 458 1 1417 743 294 34 5 chr11 109063543 109063748 -12780108 + B3 SINE B2 1 211 -5 1 1417 1506 32 26 16 chr11 109064006 109064196 -12779660 + B2_Mm1a SINE B2 2 193 0 1 1417 210 316 0 0 chr11 109064427 109064484 -12779372 + ID4 SINE ID 5 61 -22 1 1417 752 303 40 28 chr11 109064503 109064829 -12779027 + L1M2 LINE L1 4426 4755 -1388 1 1417 645 221 0 0 chr11 109064882 109065018 -12778838 + Lx8 LINE L1 6385 6520 -953 1 1417 546 248 64 0 chr11 109065048 109065173 -12778683 - MTD LTR MaLR 0 419 287 1 1417 870 229 173 12 chr11 109065273 109065603 -12778253 + Lx8 LINE L1 7089 7471 -2 1 1417 203 174 56 28 chr11 109065712 109065783 -12778073 + (GTTTG)n Simple_repeat Simple_repeat 1 73 0 1 1417 533 233 0 0 chr11 109065802 109065905 -12777951 - B1F SINE Alu -7 142 40 1 1417 267 240 37 83 chr11 109065821 109065837 -12778019 - RLTR25B LTR ERVK -511 517 472 1 1417 272 200 0 79 chr11 109065837 109065913 -12777943 - MT2B LTR ERVL -341 260 191 1 1417 267 240 37 83 chr11 109065913 109065930 -12777926 - RLTR25B LTR ERVK -511 471 414 1 1417 800 237 71 0 chr11 109066533 109066731 -12777125 + B3 SINE B2 2 213 -3 1 1417 310 306 176 53 chr11 109066886 109067017 -12776839 - RSINE1 SINE B4 -2 163 17 1 1417 879 156 15 0 chr11 109067159 109067294 -12776562 + B1_Mur2 SINE Alu 5 141 -8 1 1417 288 0 0 0 chr11 109067577 109067609 -12776247 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 1 1417 252 0 0 0 chr11 109067734 109067762 -12776094 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 1417 376 351 25 25 chr11 109067868 109068113 -12775743 + L1ME3A LINE L1 5914 6158 -15 1 1417 673 288 68 30 chr11 109068726 109068949 -12774907 + B4 SINE B4 2 233 -59 1 1417 677 266 13 7 chr11 109068949 109069104 -12774752 + B3 SINE B2 1 156 -60 1 1417 351 0 0 0 chr11 109069104 109069143 -12774713 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1417 384 22 0 0 chr11 109069270 109069315 -12774541 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1417 426 39 0 0 chr11 109069315 109069367 -12774489 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1417 249 388 10 10 chr11 109069873 109069977 -12773879 - B4A SINE B4 -83 209 106 1 1417 360 0 0 0 chr11 109069983 109070023 -12773833 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1417 295 286 62 52 chr11 109070412 109070508 -12773348 - ID_B1 SINE B4 -2 222 126 1 1417 474 293 131 78 chr11 109070645 109071027 -12772829 + LTR16A1 LTR ERVL 21 422 -34 1 1417 347 21 43 0 chr11 109072523 109072570 -12771286 + (GGGGA)n Simple_repeat Simple_repeat 3 51 0 1 1417 289 298 11 77 chr11 109072588 109072679 -12771177 - MER2 DNA MER2_type 0 345 261 1 1417 187 31 62 0 chr11 109072702 109072734 -12771122 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1417 2562 104 6 3 chr11 109072830 109073188 -12770668 - RLTR19 LTR ERVK -140 359 1 1 1417 520 319 41 30 chr11 109073223 109073494 -12770362 - Lx7 LINE L1 -396 7300 7027 1 1417 494 289 100 16 chr11 109073518 109073708 -12770148 - MER2 DNA MER2_type -139 206 1 1 1417 231 278 125 0 chr11 109074085 109074157 -12769699 + Tigger7 DNA MER2_type 299 379 -2112 1 1417 1811 150 69 50 chr11 109074186 109074565 -12769291 - ORR1B1 LTR MaLR -8 386 1 1 1417 307 343 19 28 chr11 109074576 109074684 -12769172 + Tigger7 DNA MER2_type 2385 2491 0 1 1417 717 349 100 26 chr11 109074804 109075422 -12768434 + L2 LINE L2 1416 2079 -1340 1 1417 406 300 99 9 chr11 109075425 109075536 -12768320 + ID_B1 SINE B4 5 125 -99 1 1417 222 283 0 32 chr11 109075500 109075543 -12768313 + PB1D9 SINE Alu 9 49 -71 1 1417 2336 183 77 24 chr11 109075543 109075808 -12768048 - RLTR12B LTR ERVK 0 528 255 1 1417 931 40 16 0 chr11 109075808 109075932 -12767924 + (TC)n Simple_repeat Simple_repeat 1 126 0 1 1417 2336 183 77 24 chr11 109075932 109076159 -12767697 - RLTR12B LTR ERVK -274 254 10 1 1417 437 181 36 0 chr11 109076159 109076242 -12767614 + ID_B1 SINE B4 139 224 0 1 1417 1271 88 44 6 chr11 109076259 109076441 -12767415 + B2_Mm2 SINE B2 5 193 -2 1 1417 356 251 164 53 chr11 109076452 109076641 -12767215 + L2 LINE L2 2069 2278 -1141 1 1417 945 322 30 4 chr11 109076896 109077167 -12766689 + B4 SINE B4 11 288 -4 1 1417 393 22 0 0 chr11 109077170 109077216 -12766640 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1417 229 300 139 16 chr11 109077246 109077368 -12766488 + L2 LINE L2 2660 2796 -623 1 1417 339 283 0 0 chr11 109078707 109078813 -12765043 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 1417 588 206 4 17 chr11 109078829 109079066 -12764790 + (TG)n Simple_repeat Simple_repeat 1 233 0 1 1417 202 341 11 0 chr11 109079012 109079103 -12764753 + (TATG)n Simple_repeat Simple_repeat 3 94 0 1 1417 311 286 52 0 chr11 109079124 109079201 -12764655 - B4A SINE B4 -154 138 58 1 1417 833 245 5 36 chr11 109080168 109080363 -12763493 + ORR1E LTR MaLR 3 191 -168 1 1417 271 310 0 14 chr11 109080503 109080575 -12763281 - MLT1C LTR MaLR -1 466 396 1 1417 623 286 0 15 chr11 109080733 109080868 -12762988 - B1F SINE Alu -5 144 12 1 1417 189 0 0 0 chr11 109081231 109081252 -12762604 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 2 1417 369 0 0 0 chr11 109081276 109081317 -12762539 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1417 407 230 0 0 chr11 109081325 109081399 -12762457 - B3A SINE B2 -36 162 89 2 1417 361 106 109 0 chr11 109081806 109082414 -12761442 + (CAGCT)n Simple_repeat Simple_repeat 1 674 0 2 1417 217 114 101 0 chr11 109082425 109082504 -12761352 + (CAGCT)n Simple_repeat Simple_repeat 4 90 0 2 1417 613 329 37 28 chr11 109085020 109085236 -12758620 - MER20 DNA MER1_type 0 219 2 2 1417 325 270 14 0 chr11 109085256 109085330 -12758526 + L2a LINE L2 3348 3422 -4 2 1417 359 328 23 23 chr11 109085480 109085608 -12758248 + LTR16B LTR ERVL 130 257 -206 2 1417 883 279 160 40 chr11 109085663 109085988 -12757868 + MTEb LTR MaLR 1 364 -15 2 1417 916 248 2 1 chr11 109085996 109086198 -12757658 + B3A SINE B2 2 205 -11 2 1417 927 125 0 0 chr11 109086201 109086369 -12757487 + (GGAA)n Simple_repeat Simple_repeat 3 170 0 2 1417 420 20 0 0 chr11 109087632 109087681 -12756175 + (TCC)n Simple_repeat Simple_repeat 3 51 0 2 1417 189 0 0 0 chr11 109089561 109089582 -12754274 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1417 281 265 29 0 chr11 109089585 109089653 -12754203 - ID4 SINE ID -11 72 3 2 1417 198 263 53 0 chr11 109090703 109090760 -12753096 - MIRc SINE MIR -119 149 90 2 1417 244 263 0 17 chr11 109090773 109090831 -12753025 + C-rich Low_complexity Low_complexity 5 61 0 2 1417 231 255 0 0 chr11 109091854 109091901 -12751955 + (TGG)n Simple_repeat Simple_repeat 1 47 0 2 1417 198 171 0 0 chr11 109091917 109091958 -12751898 + (TGG)n Simple_repeat Simple_repeat 2 42 0 2 1417 205 288 30 0 chr11 109091971 109092037 -12751819 + (ATGGTG)n Simple_repeat Simple_repeat 6 73 0 2 1417 180 200 0 0 chr11 109092042 109092082 -12751774 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2 1417 542 249 16 77 chr11 109092082 109092265 -12751591 - HAL1-2a_MD LINE L1 -509 2515 2344 2 1417 204 345 0 0 chr11 109092280 109092338 -12751518 - MIR SINE MIR -2 260 203 2 1417 627 240 7 20 chr11 109093305 109093454 -12750402 - B1_Mur2 SINE Alu -1 148 2 2 1417 752 203 0 0 chr11 109093708 109093841 -12750015 + B1_Mur1 SINE Alu 9 141 -8 2 1417 814 271 11 90 chr11 109094308 109094576 -12749280 - Charlie16a DNA MER1_type -3 339 93 2 1417 294 309 110 27 chr11 109094578 109094732 -12749124 - MIRc SINE MIR -39 169 8 2 1417 357 176 0 0 chr11 109094732 109094806 -12749050 + (TTCA)n Simple_repeat Simple_repeat 4 77 0 2 1417 539 339 71 100 chr11 109095482 109095599 -12748257 + MLT1H LTR MaLR 13 118 -431 2 1417 1046 244 5 5 chr11 109095599 109095813 -12748043 - ID_B1 SINE B4 -9 215 2 2 1417 539 339 71 100 chr11 109095813 109096046 -12747810 + MLT1H LTR MaLR 119 353 -196 2 1417 246 241 154 44 chr11 109096201 109096292 -12747564 + L2c LINE L2 3285 3385 -2 2 1417 261 282 0 40 chr11 109097771 109097845 -12746011 + B4 SINE B4 15 85 -207 2 1417 987 122 17 0 chr11 109097895 109098067 -12745789 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 2 1417 952 135 6 12 chr11 109098067 109098239 -12745617 + GA-rich Low_complexity Low_complexity 3 173 0 2 1417 230 81 27 0 chr11 109098256 109098293 -12745563 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 2 1417 691 154 92 35 chr11 109098293 109098311 -12745545 - RMER17C LTR ERVK -13 397 380 2 1417 651 26 0 0 chr11 109098311 109098388 -12745468 + (GGAGA)n Simple_repeat Simple_repeat 3 79 0 2 1417 691 154 92 35 chr11 109098388 109098510 -12745346 - RMER17C LTR ERVK -31 379 249 2 1417 348 254 51 58 chr11 109099656 109099794 -12744062 + MER5A DNA MER1_type 3 139 -50 2 1417 417 190 155 160 chr11 109101182 109101376 -12742480 + B3A SINE B2 1 193 -5 2 1417 420 0 50 0 chr11 109101835 109101895 -12741961 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1417 589 254 46 8 chr11 109102615 109102746 -12741110 - RSINE1 SINE B4 -28 137 2 2 1417 396 0 0 0 chr11 109103228 109103272 -12740584 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1417 1251 239 134 31 chr11 109103655 109104005 -12739851 + MTD LTR MaLR 18 403 -16 2 1417 308 263 179 50 chr11 109104013 109104048 -12739808 + L1MB2 LINE L1 5841 5869 -302 2 1417 1756 168 33 74 chr11 109104048 109104440 -12739416 + ORR1C1 LTR MaLR 3 378 0 2 1417 308 263 179 50 chr11 109104440 109104684 -12739172 + L1MB2 LINE L1 5870 6155 -16 2 1417 424 299 93 102 chr11 109104684 109104889 -12738967 + B4A SINE B4 76 278 -14 2 1417 326 299 87 43 chr11 109104928 109105036 -12738820 + L1MC LINE L1 5632 5739 -2046 2 1417 1141 206 5 23 chr11 109105036 109105254 -12738602 + B3 SINE B2 2 215 -1 2 1417 326 299 87 43 chr11 109105254 109105330 -12738526 + L1MC LINE L1 5740 5824 -1961 2 1417 325 342 72 10 chr11 109105346 109105541 -12738315 + L1MB7 LINE L1 5894 6100 -84 2 1417 486 207 62 18 chr11 109105575 109105688 -12738168 + PB1D7 SINE Alu 1 118 -2 2 1417 454 324 0 0 chr11 109105700 109105802 -12738054 + ID_B1 SINE B4 114 215 -9 2 1417 200 277 93 35 chr11 109106508 109106594 -12737262 + MER5B DNA MER1_type 18 108 -70 2 1417 878 197 114 0 chr11 109106618 109106791 -12737065 + B3 SINE B2 2 185 -31 2 1417 453 19 0 0 chr11 109106791 109106845 -12737011 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1417 878 197 114 0 chr11 109106845 109106864 -12736992 + B3 SINE B2 186 215 -1 2 1417 486 0 0 0 chr11 109107130 109107184 -12736672 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1417 403 319 60 3 chr11 109107369 109107530 -12736326 + ID_B1 SINE B4 4 169 -55 2 1417 269 235 148 0 chr11 109107468 109107549 -12736307 + PB1D10 SINE Alu 18 110 -7 2 1417 252 186 49 33 chr11 109107549 109107610 -12736246 + GA-rich Low_complexity Low_complexity 2 63 0 2 1417 358 294 89 20 chr11 109107610 109107756 -12736100 + HAL1-3A_ME LINE L1 2284 2439 -419 2 1417 728 304 112 31 chr11 109108315 109108760 -12735096 + L1MB8 LINE L1 5686 6166 -12 2 1417 795 215 147 0 chr11 109108774 109108951 -12734905 - ID_B1 SINE B4 -10 214 12 2 1417 890 276 35 25 chr11 109108977 109109259 -12734597 + B4A SINE B4 2 286 -6 2 1417 1274 217 59 50 chr11 109110385 109110724 -12733132 + MTE2b LTR MaLR 1 342 -37 2 1417 406 220 0 125 chr11 109111741 109111845 -12732011 + RSINE1 SINE B4 14 104 -61 2 1417 1629 201 104 13 chr11 109111866 109112240 -12731616 + MTD LTR MaLR 3 410 -9 2 1417 285 75 0 0 chr11 109112256 109112296 -12731560 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1417 1384 147 9 26 chr11 109113463 109113693 -12730163 - URR1A DNA MER1_type 0 226 1 2 1417 532 197 189 39 chr11 109115007 109115134 -12728722 - B1_Mur1 SINE Alu -2 147 2 2 1417 246 345 42 17 chr11 109115479 109115555 -12728301 + MIRb SINE MIR 34 113 -155 2 1417 507 33 0 0 chr11 109115555 109115616 -12728240 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 2 1417 246 345 42 17 chr11 109115616 109115657 -12728199 + MIRb SINE MIR 114 154 -114 2 1417 448 191 53 26 chr11 109115801 109115914 -12727942 - MER53 DNA hAT -75 118 3 2 1417 3594 60 0 13 chr11 109116690 109117145 -12726711 + L1_Mus1 LINE L1 6119 6567 0 2 1417 378 0 0 0 chr11 109117210 109117252 -12726604 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1417 292 257 70 52 chr11 109117302 109117330 -12726526 - PB1D9 SINE Alu 0 120 4 2 1417 351 262 11 35 chr11 109117330 109117417 -12726439 - B4A SINE B4 -119 173 89 2 1417 239 256 49 49 chr11 109117450 109117532 -12726324 - MER45R DNA Tip100 -1474 107 26 2 1417 199 79 0 50 chr11 109118534 109118574 -12725282 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1417 1219 55 14 0 chr11 109118628 109118774 -12725082 + B1_Mus1 SINE Alu 1 148 0 2 1417 203 185 0 110 chr11 109118775 109118866 -12724990 + A-rich Low_complexity Low_complexity 3 83 0 2 1417 777 118 0 0 chr11 109119053 109119172 -12724684 + (CATA)n Simple_repeat Simple_repeat 3 121 0 2 1417 249 119 0 0 chr11 109120002 109120044 -12723812 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1417 612 40 0 0 chr11 109122333 109122408 -12721448 + (CTTG)n Simple_repeat Simple_repeat 1 75 0 2 1417 447 222 145 0 chr11 109122449 109122566 -12721290 - B1F SINE Alu -15 134 1 2 1417 398 253 26 3 chr11 109122668 109122781 -12721075 + B4A SINE B4 10 125 -167 2 1417 297 239 24 128 chr11 109123854 109123979 -12719877 + B4 SINE B4 98 209 -83 2 1417 293 286 19 0 chr11 109124635 109124740 -12719116 + (CA)n Simple_repeat Simple_repeat 2 108 0 2 1417 213 121 0 0 chr11 109125227 109125260 -12718596 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 2 1417 204 293 35 79 chr11 109125905 109126086 -12717770 + L2c LINE L2 3221 3416 -10 2 1417 464 186 23 11 chr11 109126519 109126606 -12717250 + ID_B1 SINE B4 6 93 -131 2 1417 601 318 29 35 chr11 109126924 109127210 -12716646 + B4A SINE B4 1 288 -4 2 1417 568 246 6 6 chr11 109127237 109127413 -12716443 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1417 258 293 0 0 chr11 109127436 109127552 -12716304 + (CA)n Simple_repeat Simple_repeat 1 116 0 2 1417 212 358 90 24 chr11 109128115 109128281 -12715575 + MIR SINE MIR 8 184 -78 2 1417 480 167 0 0 chr11 109128342 109128438 -12715418 + (TGG)n Simple_repeat Simple_repeat 2 97 0 2 1417 1006 207 5 24 chr11 109129533 109129746 -12714110 + B3 SINE B2 2 210 -6 2 1417 183 254 200 0 chr11 109130479 109130534 -12713322 - MIR SINE MIR -36 226 161 2 1417 250 284 111 56 chr11 109131650 109131758 -12712098 - L2c LINE L2 -19 3368 3255 2 1417 360 284 51 22 chr11 109131837 109131974 -12711882 + MLT1G3 LTR MaLR 66 206 -389 2 1417 261 0 0 0 chr11 109132025 109132054 -12711802 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1417 207 274 13 76 chr11 109132522 109132601 -12711255 + MIRm SINE MIR 92 165 -111 2 1417 360 235 12 12 chr11 109132688 109132774 -12711082 + Charlie26a DNA MER1_type 70 155 -170 2 1417 1465 198 78 3 chr11 109132797 109133091 -12710765 + MTEa LTR MaLR 7 322 -57 2 1417 805 69 415 0 chr11 109133213 109133343 -12710513 + B2_Mm2 SINE B2 2 185 -10 2 1417 738 238 7 0 chr11 109133347 109133778 -12710078 + GA-rich Low_complexity Low_complexity 1 434 0 2 1417 914 293 16 100 chr11 109134142 109134461 -12709395 + B4 SINE B4 1 292 0 2 1417 414 0 0 0 chr11 109134471 109134517 -12709339 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1417 364 255 235 0 chr11 109134955 109135053 -12708803 + PB1 SINE Alu 4 124 -3 3 1417 232 183 53 53 chr11 109135100 109135175 -12708681 + GA-rich Low_complexity Low_complexity 4 78 0 3 1417 1391 201 133 35 chr11 109135380 109135760 -12708096 + MTD LTR MaLR 1 404 -15 3 1417 990 93 42 6 chr11 109136065 109136407 -12707449 + (TGGA)n Simple_repeat Simple_repeat 1 354 0 3 1417 233 247 67 0 chr11 109136419 109136508 -12707348 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 3 1417 1077 219 65 36 chr11 109137456 109137731 -12706125 - B4A SINE B4 -8 284 2 3 1417 216 0 0 0 chr11 109138172 109138196 -12705660 + (CTTG)n Simple_repeat Simple_repeat 4 27 0 3 1417 249 297 108 21 chr11 109138197 109138290 -12705566 - B1F SINE Alu -8 141 41 3 1417 650 266 141 21 chr11 109138474 109138716 -12705140 + MER115 DNA Tip100 410 680 -13 3 1417 441 0 0 0 chr11 109139950 109139999 -12703857 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1417 347 275 0 0 chr11 109140087 109140156 -12703700 - ID4_ SINE ID -2 81 13 3 1417 3204 55 9 43 chr11 109141043 109141464 -12702392 + MTB_Mm LTR MaLR 1 407 0 3 1417 253 221 98 69 chr11 109141585 109141651 -12702205 + B4A SINE B4 6 68 -224 3 1417 192 97 0 0 chr11 109141651 109141682 -12702174 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 3 1417 253 221 98 69 chr11 109141682 109141717 -12702139 + B4A SINE B4 69 110 -182 3 1417 315 337 0 0 chr11 109141732 109141815 -12702041 + B4 SINE B4 182 264 -28 3 1417 295 284 190 63 chr11 109142128 109142279 -12701577 - MER58A DNA MER1_type -36 188 18 3 1417 1619 196 142 3 chr11 109142279 109142632 -12701224 - MTD LTR MaLR 0 419 18 3 1417 188 135 27 0 chr11 109142638 109142675 -12701181 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1417 239 111 22 0 chr11 109143505 109143550 -12700306 + RMER4A LTR ERVK 2 47 -419 3 1417 231 161 0 0 chr11 109143555 109143611 -12700245 + GA-rich Low_complexity Low_complexity 2 57 0 3 1417 387 0 0 0 chr11 109143627 109143670 -12700186 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1417 252 122 0 0 chr11 109143685 109143726 -12700130 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1417 1643 160 61 14 chr11 109143726 109144023 -12699833 + RMER4A LTR ERVK 33 343 -123 3 1417 522 46 0 0 chr11 109144024 109144089 -12699767 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1417 316 80 0 0 chr11 109144098 109144148 -12699708 + RMER4A LTR ERVK 417 466 0 3 1417 8312 19 0 1 chr11 109144269 109145866 -12697990 - L1Md_T LINE L1 0 6582 4987 3 1417 305 299 64 52 chr11 109145866 109146039 -12697817 + L2a LINE L2 3231 3405 -21 3 1417 274 242 30 0 chr11 109146247 109146313 -12697543 + ID4 SINE ID 3 70 -13 3 1417 356 307 17 34 chr11 109146637 109146755 -12697101 + PB1D9 SINE Alu 2 117 -3 3 1417 348 354 13 52 chr11 109146755 109146910 -12696946 + RSINE1 SINE B4 17 165 0 3 1417 257 379 29 121 chr11 109146930 109147104 -12696752 + B4 SINE B4 62 219 -73 3 1417 681 259 14 7 chr11 109146965 109147109 -12696747 + B1F1 SINE Alu 5 149 0 3 1417 245 265 45 85 chr11 109146987 109147164 -12696692 - YREP_Mm Unknown Unknown -1522 290 121 3 1417 185 107 36 0 chr11 109147297 109147325 -12696531 + L2b LINE L2 3122 3150 -225 3 1417 341 309 86 0 chr11 109147464 109147603 -12696253 - Tigger7 DNA MER2_type 0 2491 2341 3 1417 290 278 54 22 chr11 109147638 109147730 -12696126 + MLT1A1 LTR MaLR 25 119 -289 3 1417 189 107 0 0 chr11 109148598 109148626 -12695230 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1417 351 0 0 0 chr11 109148817 109148856 -12695000 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1417 198 279 109 47 chr11 109149075 109149139 -12694717 - MIRm SINE MIR -41 235 168 3 1417 243 317 12 0 chr11 109149273 109149355 -12694501 + ID4 SINE ID 1 83 0 3 1417 382 330 22 11 chr11 109149795 109149973 -12693883 + L1MB1 LINE L1 5614 5793 -396 3 1417 807 174 32 0 chr11 109149975 109150222 -12693634 + (CACG)n Simple_repeat Simple_repeat 1 255 0 3 1417 242 231 67 92 chr11 109150361 109150480 -12693376 + L1MB1 LINE L1 5966 6081 -87 3 1417 259 203 130 0 chr11 109150538 109150607 -12693249 + L1MB1 LINE L1 6090 6167 -1 3 1417 678 263 140 38 chr11 109151149 109151414 -12692442 + B4 SINE B4 1 292 0 3 1417 252 0 0 0 chr11 109151814 109151842 -12692014 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1417 578 260 130 70 chr11 109151855 109152070 -12691786 - B4 SINE B4 -1 291 64 3 1417 22 0 0 0 chr11 109152240 109152262 -12691594 + AT_rich Low_complexity Low_complexity 1 22 0 3 1417 281 310 0 58 chr11 109152673 109152793 -12691063 + PB1D10 SINE Alu 5 117 0 3 1417 594 255 86 13 chr11 109152796 109152947 -12690909 + RSINE1 SINE B4 3 164 -1 3 1417 274 279 16 0 chr11 109153007 109153068 -12690788 + tRNA-Ala-GCY_ tRNA tRNA 13 74 -1 3 1417 555 62 0 0 chr11 109153073 109153153 -12690703 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1417 580 249 108 31 chr11 109153157 109153352 -12690504 + MLT1B LTR MaLR 152 361 -29 3 1417 900 282 10 0 chr11 109154391 109154593 -12689263 + ID_B1 SINE B4 8 211 -13 3 1417 317 213 0 16 chr11 109155556 109155618 -12688238 + MTD LTR MaLR 1 61 -360 3 1417 405 0 0 0 chr11 109155620 109155665 -12688191 + (TTA)n Simple_repeat Simple_repeat 1 45 0 3 1417 601 71 0 23 chr11 109155674 109155761 -12688095 - B1_Mus2 SINE Alu 0 147 63 3 1417 1731 210 45 8 chr11 109155762 109156115 -12687741 + MTD LTR MaLR 49 401 -6 3 1417 190 319 43 14 chr11 109156274 109156344 -12687512 + L2 LINE L2 2791 2862 -557 3 1417 356 245 6 0 chr11 109156587 109156746 -12687110 + CT-rich Low_complexity Low_complexity 2 161 0 3 1417 617 119 0 10 chr11 109156770 109156872 -12686984 + (TCC)n Simple_repeat Simple_repeat 3 103 0 3 1417 252 214 0 0 chr11 109156868 109156924 -12686932 + CT-rich Low_complexity Low_complexity 4 59 0 3 1417 420 180 170 0 chr11 109157038 109157188 -12686668 + MIRb SINE MIR 45 235 -33 3 1417 282 285 52 52 chr11 109160077 109160251 -12683605 - L1MC1 LINE L1 -1 6332 6159 3 1417 787 251 92 48 chr11 109161888 109162160 -12681696 + B4 SINE B4 5 288 -4 3 1417 214 276 0 0 chr11 109162184 109162242 -12681614 + (CATA)n Simple_repeat Simple_repeat 4 61 0 3 1417 1214 68 0 0 chr11 109162890 109163037 -12680819 + B1_Mm SINE Alu 1 147 0 3 1417 225 0 0 0 chr11 109163037 109163062 -12680794 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1417 195 42 0 0 chr11 109164211 109164235 -12679621 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 1417 1224 94 6 0 chr11 109164235 109164394 -12679462 - B2_Mm1a SINE B2 -32 161 2 3 1417 954 249 19 19 chr11 109164475 109164684 -12679172 - B3 SINE B2 -7 209 1 3 1417 495 245 60 20 chr11 109164847 109164997 -12678859 - L1MA10 LINE L1 -3 6331 6176 3 1417 740 234 0 0 chr11 109165296 109165433 -12678423 + B1_Mur2 SINE Alu 1 137 -12 3 1417 1728 106 0 4 chr11 109165512 109165759 -12678097 - IAPEY3_LTR LTR ERVK -86 246 1 3 1417 276 286 35 35 chr11 109166118 109166205 -12677651 + B4 SINE B4 1 87 -205 3 1417 806 287 0 16 chr11 109166234 109166425 -12677431 + B4A SINE B4 84 271 -21 3 1417 408 40 0 0 chr11 109166426 109166476 -12677380 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 3 1417 352 259 83 91 chr11 109166480 109166758 -12677098 + ORR1E LTR MaLR 67 333 -46 3 1417 633 211 23 0 chr11 109166761 109166889 -12676967 + RSINE1 SINE B4 3 133 -32 3 1417 276 100 0 0 chr11 109166931 109166971 -12676885 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1417 243 0 0 0 chr11 109166972 109166999 -12676857 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 3 1417 990 255 146 12 chr11 109167150 109167480 -12676376 + ORR1D1 LTR MaLR 1 374 0 3 1417 279 203 0 0 chr11 109167670 109167744 -12676112 + CT-rich Low_complexity Low_complexity 2 75 0 3 1417 532 330 7 42 chr11 109167744 109167924 -12675932 - ID_B1 SINE B4 -47 245 71 3 1417 1367 82 43 0 chr11 109167925 109168109 -12675747 - B2_Mm2 SINE B2 -3 192 1 3 1417 1990 176 21 32 chr11 109168117 109168493 -12675363 - ORR1C2 LTR MaLR 0 384 13 3 1417 1683 31 0 0 chr11 109168497 109168689 -12675167 - B2_Mm1a SINE B2 0 193 2 3 1417 599 221 22 14 chr11 109168729 109168867 -12674989 - B1F SINE Alu -6 143 5 3 1417 234 154 0 49 chr11 109169321 109169362 -12674494 - B3A SINE B2 -159 39 1 3 1417 526 270 53 26 chr11 109169794 109169946 -12673910 + B4A SINE B4 3 158 -134 3 1417 233 0 62 0 chr11 109170021 109170053 -12673803 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 3 1417 1086 66 51 0 chr11 109170272 109170409 -12673447 + B1_Mus1 SINE Alu 5 148 0 3 1417 258 32 0 0 chr11 109170544 109170575 -12673281 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 3 1417 660 154 72 58 chr11 109170575 109170713 -12673143 - B1_Mus2 SINE Alu -7 140 1 3 1417 560 229 9 157 chr11 109170773 109170799 -12673057 - B2_Mm2 SINE B2 -9 186 161 3 1417 252 0 0 0 chr11 109170799 109170827 -12673029 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1417 813 250 11 32 chr11 109170827 109171017 -12672839 - B3 SINE B2 -29 187 2 3 1417 198 0 0 0 chr11 109171027 109171049 -12672807 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1417 857 258 21 5 chr11 109171789 109171976 -12671880 + B3 SINE B2 2 191 -25 3 1417 321 68 0 0 chr11 109171978 109172022 -12671834 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1417 342 45 0 0 chr11 109172022 109172066 -12671790 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1417 360 0 0 0 chr11 109172637 109172677 -12671179 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1417 848 205 15 28 chr11 109172677 109172905 -12670951 + B3A SINE B2 4 214 -2 3 1417 3421 33 5 0 chr11 109172910 109173304 -12670552 + MTA_Mm LTR MaLR 1 396 0 3 1417 22 35 0 0 chr11 109173313 109173342 -12670514 + AT_rich Low_complexity Low_complexity 1 29 0 3 1417 201 94 0 0 chr11 109173436 109173468 -12670388 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1417 236 312 30 30 chr11 109174517 109174616 -12669240 - MER103 DNA DNA -67 99 1 4 1417 449 221 193 0 chr11 109174885 109175025 -12668831 + B3 SINE B2 1 167 -49 4 1417 207 0 0 0 chr11 109175025 109175048 -12668808 + (CATA)n Simple_repeat Simple_repeat 4 26 0 4 1417 783 222 0 0 chr11 109175330 109175465 -12668391 + B1_Mur4 SINE Alu 11 145 -5 4 1417 676 303 105 17 chr11 109175578 109175816 -12668040 - MLT1F LTR MaLR -186 362 104 4 1417 978 165 7 9 chr11 109176038 109176346 -12667510 + CT-rich Low_complexity Low_complexity 1 307 0 4 1417 3021 63 62 3 chr11 109176473 109176857 -12666999 - MTB_Mm LTR MaLR 0 407 1 4 1417 530 349 72 0 chr11 109176894 109177046 -12666810 + RSINE1 SINE B4 3 165 0 4 1417 530 202 90 18 chr11 109177171 109177282 -12666574 + PB1D9 SINE Alu 2 120 0 4 1417 342 260 118 20 chr11 109177278 109177380 -12666476 - LTR87 LTR ERVL? -306 318 207 4 1417 903 314 83 13 chr11 109177693 109178077 -12665779 - MER68 LTR ERVL -3 560 150 4 1417 330 287 114 76 chr11 109178225 109178357 -12665499 + ID_B1 SINE B4 82 218 -6 4 1417 239 267 51 39 chr11 109178658 109178736 -12665120 - MLT2B2 LTR ERVL -434 81 3 4 1417 335 283 35 17 chr11 109179292 109179407 -12664449 + MIR3 SINE MIR 67 183 -25 4 1417 2501 92 3 9 chr11 109179484 109179825 -12664031 - Lx LINE L1 -87 5796 5458 4 1417 5509 82 18 134 chr11 109179825 109180779 -12663077 + Lx LINE L1 5812 6654 0 4 1417 262 268 0 14 chr11 109180867 109180939 -12662917 + B4A SINE B4 25 95 -197 4 1417 814 234 44 15 chr11 109180940 109181144 -12662712 + B3 SINE B2 1 210 -6 4 1417 240 111 0 0 chr11 109181146 109181182 -12662674 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1417 970 122 14 0 chr11 109181182 109181321 -12662535 - B1_Mur2 SINE Alu -2 147 7 4 1417 765 299 0 15 chr11 109181365 109181569 -12662287 + B4 SINE B4 82 282 -10 4 1417 244 312 71 27 chr11 109181626 109181738 -12662118 + MIRb SINE MIR 143 259 -9 4 1417 225 0 0 0 chr11 109182376 109182401 -12661455 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 177 1115 206 92 108 chr11 109182921 109183180 -12660676 + ORR1D2 LTR MaLR 1 255 -115 4 1418 1287 72 0 0 chr11 109183180 109183360 -12660496 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 4 1418 1115 206 92 108 chr11 109183360 109183415 -12660441 + ORR1D2 LTR MaLR 256 310 -60 4 1418 1782 170 83 60 chr11 109183415 109183510 -12660346 - RMER4A LTR ERVK 0 466 353 4 1418 657 38 0 0 chr11 109183510 109183590 -12660266 + (GGA)n Simple_repeat Simple_repeat 2 81 0 4 1418 1782 170 83 60 chr11 109183590 109183914 -12659942 - RMER4A LTR ERVK -114 352 39 4 1418 321 206 0 16 chr11 109183902 109183966 -12659890 + ORR1D2 LTR MaLR 308 370 0 4 1418 206 298 0 0 chr11 109184061 109184118 -12659738 + A-rich Low_complexity Low_complexity 1 57 0 4 1418 399 228 0 10 chr11 109184327 109184429 -12659427 + L1M5 LINE L1 2738 2838 -3308 4 1418 34 24 0 0 chr11 109184440 109184481 -12659375 + AT_rich Low_complexity Low_complexity 1 41 0 4 1418 23 78 0 0 chr11 109184498 109184549 -12659307 + AT_rich Low_complexity Low_complexity 1 51 0 4 1418 371 268 161 23 chr11 109184556 109184686 -12659170 + MTE2a LTR MaLR 5 152 -227 4 1418 679 318 86 4 chr11 109184760 109184994 -12658862 + MER21B LTR ERV1 469 721 -142 4 1418 236 229 0 186 chr11 109185061 109185179 -12658677 + PB1D9 SINE Alu 21 116 -4 4 1418 240 236 254 0 chr11 109185225 109185335 -12658521 + L1M5 LINE L1 3714 3851 -2295 4 1418 228 342 25 12 chr11 109185343 109185423 -12658433 + ID4_ SINE ID 2 82 -1 4 1418 225 128 28 56 chr11 109185759 109185867 -12657989 + (GGGTG)n Simple_repeat Simple_repeat 1 105 0 4 1418 325 345 26 9 chr11 109185870 109185984 -12657872 - MIR SINE MIR -140 122 7 4 1418 630 272 59 0 chr11 109186122 109186291 -12657565 + B3A SINE B2 1 179 -19 4 1418 345 100 0 0 chr11 109186291 109186341 -12657515 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 4 1418 474 186 60 68 chr11 109186398 109186531 -12657325 - B1F SINE Alu 0 149 18 4 1418 833 158 0 7 chr11 109186848 109187152 -12656704 + (CA)n Simple_repeat Simple_repeat 1 301 0 4 1418 272 276 153 65 chr11 109187424 109187440 -12656416 - B1F1 SINE Alu 0 149 15 4 1418 399 255 111 19 chr11 109187440 109187548 -12656308 - ID_B1 SINE B4 -11 213 96 4 1418 426 39 0 0 chr11 109189696 109189748 -12654108 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1418 341 160 0 0 chr11 109189796 109189846 -12654010 + ID_B1 SINE B4 104 153 -71 4 1418 1153 194 19 0 chr11 109189848 109190054 -12653802 + B3 SINE B2 5 214 -2 4 1418 349 299 76 41 chr11 109190116 109190287 -12653569 + HAL1-3A_ME LINE L1 2263 2439 -419 4 1418 1011 237 77 14 chr11 109191345 109191567 -12652289 + MTD LTR MaLR 7 242 -177 4 1418 1257 41 0 0 chr11 109191580 109191727 -12652129 + B1_Mus1 SINE Alu 1 147 -1 4 1418 262 270 0 39 chr11 109193347 109193424 -12650432 - ID4_ SINE ID -9 74 1 4 1418 324 0 0 0 chr11 109193432 109193468 -12650388 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1418 221 297 90 51 chr11 109193504 109193582 -12650274 + MIR SINE MIR 47 127 -135 4 1418 499 350 7 0 chr11 109193599 109193736 -12650120 + ID_B1 SINE B4 82 219 -5 4 1418 282 328 16 62 chr11 109193614 109193750 -12650106 - YREP_Mm Unknown Unknown -1512 300 169 4 1418 324 0 0 0 chr11 109193750 109193786 -12650070 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 4 1418 282 328 16 62 chr11 109193786 109193841 -12650015 - YREP_Mm Unknown Unknown -1644 168 118 4 1418 225 176 0 0 chr11 109194553 109194587 -12649269 - B1F SINE Alu -8 141 108 4 1418 290 186 0 48 chr11 109194680 109194692 -12649164 + 4.5SRNA scRNA scRNA 28 38 -56 4 1418 280 295 115 9 chr11 109194692 109194805 -12649051 + PB1 SINE Alu 1 125 -2 4 1418 290 186 0 48 chr11 109194805 109194854 -12649002 + 4.5SRNA scRNA scRNA 39 86 -8 4 1418 848 48 0 0 chr11 109194807 109194912 -12648944 + B1_Mus2 SINE Alu 43 147 0 4 1418 33 0 0 0 chr11 109194912 109194945 -12648911 + AT_rich Low_complexity Low_complexity 1 33 0 4 1418 578 244 59 7 chr11 109195057 109195193 -12648663 + ID_B1 SINE B4 82 224 0 4 1418 229 368 36 22 chr11 109195298 109195437 -12648419 - B1F1 SINE Alu -1 148 8 4 1418 290 301 69 61 chr11 109195500 109195631 -12648225 - ORR1E LTR MaLR -206 153 22 4 1418 693 0 0 0 chr11 109195848 109195925 -12647931 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 4 1418 22 35 0 0 chr11 109196090 109196119 -12647737 + AT_rich Low_complexity Low_complexity 1 29 0 4 1418 667 247 52 0 chr11 109196475 109196629 -12647227 + RSINE1 SINE B4 2 163 -2 4 1418 779 263 53 106 chr11 109197315 109197655 -12646201 + MTD LTR MaLR 1 322 -97 4 1418 426 114 0 0 chr11 109197734 109197804 -12646052 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 4 1418 983 141 0 32 chr11 109198605 109198759 -12645097 + B1_Mur1 SINE Alu 1 149 0 4 1418 297 323 50 20 chr11 109198823 109198924 -12644932 - B1_Mus1 SINE Alu -44 104 1 4 1418 244 263 54 157 chr11 109198890 109198937 -12644919 - MT2B LTR ERVL -311 290 218 4 1418 355 238 38 0 chr11 109198937 109199017 -12644839 - PB1D7 SINE Alu -20 100 18 4 1418 244 263 54 157 chr11 109199017 109199075 -12644781 - MT2B LTR ERVL -311 217 125 4 1418 3008 166 17 8 chr11 109199375 109199898 -12643958 - RLTR11A LTR ERVK 0 528 1 4 1418 951 217 68 20 chr11 109199900 109200196 -12643660 - MYSERV-int LTR ERVK -2 6548 6239 4 1418 206 152 43 21 chr11 109200504 109200551 -12643305 + T-rich Low_complexity Low_complexity 3 50 0 4 1418 235 200 22 0 chr11 109200625 109200670 -12643186 - ID4_ SINE ID -37 46 1 4 1418 273 319 11 21 chr11 109200682 109200775 -12643081 + L2 LINE L2 2672 2763 -656 4 1418 704 318 27 45 chr11 109200852 109200966 -12642890 + B4A SINE B4 7 124 -168 4 1418 315 49 0 0 chr11 109200966 109201007 -12642849 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1418 704 318 27 45 chr11 109201007 109201116 -12642740 + B4A SINE B4 125 226 -66 4 1418 718 215 0 29 chr11 109201120 109201259 -12642597 + B1_Mur3 SINE Alu 1 135 -14 4 1418 249 109 0 0 chr11 109201264 109201310 -12642546 + (CATA)n Simple_repeat Simple_repeat 2 47 0 4 1418 305 273 15 0 chr11 109201310 109201376 -12642480 + B4A SINE B4 219 285 -7 4 1418 519 130 0 0 chr11 109201441 109201541 -12642315 + (TC)n Simple_repeat Simple_repeat 2 101 0 4 1418 315 0 0 0 chr11 109201541 109201576 -12642280 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1418 210 71 0 0 chr11 109203217 109203245 -12640611 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1418 396 0 0 0 chr11 109204086 109204130 -12639726 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1418 600 14 0 0 chr11 109204240 109204309 -12639547 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 1418 294 50 0 0 chr11 109204309 109204349 -12639507 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1418 966 256 10 0 chr11 109204387 109204590 -12639266 - ID_B1 SINE B4 -19 205 1 4 1418 202 296 126 34 chr11 109204630 109204805 -12639051 + L2 LINE L2 2090 2280 -1139 4 1418 223 233 24 176 chr11 109204806 109204931 -12638925 + B2_Mm2 SINE B2 81 186 -9 4 1418 290 195 33 99 chr11 109205772 109205863 -12637993 + ORR1D2 LTR MaLR 2 86 -284 4 1418 583 287 73 21 chr11 109205971 109206163 -12637693 + Tigger7 DNA MER2_type 2290 2491 0 4 1418 322 257 0 0 chr11 109206224 109206294 -12637562 - B2_Mm2 SINE B2 -122 73 4 4 1418 789 282 42 28 chr11 109206323 109206538 -12637318 - ID_B1 SINE B4 -4 220 3 4 1418 1175 316 115 11 chr11 109206543 109206718 -12637138 - MLT1F LTR MaLR -3 545 350 4 1418 1056 133 191 0 chr11 109206718 109206906 -12636950 - URR1A DNA MER1_type 0 226 3 4 1418 1175 316 115 11 chr11 109206906 109207181 -12636675 - MLT1F LTR MaLR -199 349 48 4 1418 323 236 64 11 chr11 109207185 109207279 -12636577 - MTEa LTR MaLR -2 377 279 4 1418 470 327 91 7 chr11 109207260 109207414 -12636442 + ID_B1 SINE B4 51 217 -7 4 1418 447 237 0 0 chr11 109207430 109207544 -12636312 + GA-rich Low_complexity Low_complexity 3 116 0 4 1418 1235 242 62 24 chr11 109207544 109207854 -12636002 - ORR1E LTR MaLR -39 340 4 4 1418 390 262 114 76 chr11 109208141 109208405 -12635451 + B4A SINE B4 1 274 -18 4 1418 801 22 66 0 chr11 109208447 109208583 -12635273 + (CA)n Simple_repeat Simple_repeat 2 146 0 4 1418 246 296 23 58 chr11 109209296 109209382 -12634474 + ID4_ SINE ID 1 83 0 4 1418 515 287 7 30 chr11 109209758 109209907 -12633949 + B1F1 SINE Alu 1 142 -7 5 1418 334 250 102 0 chr11 109209916 109210004 -12633852 + MTEa LTR MaLR 210 306 -73 5 1418 485 319 7 7 chr11 109210401 109210540 -12633316 + B4A SINE B4 1 139 -153 5 1418 203 133 22 0 chr11 109210571 109210616 -12633240 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1418 326 102 20 0 chr11 109210616 109210665 -12633191 + HAL1-3A_ME LINE L1 1969 2018 -840 5 1418 642 202 0 0 chr11 109210665 109210828 -12633028 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 1418 312 252 71 53 chr11 109212050 109212163 -12631693 + MER3 DNA MER1_type 66 180 -29 5 1418 343 225 0 43 chr11 109212159 109212252 -12631604 + Charlie5 DNA MER1_type 2242 2330 -294 5 1418 371 285 105 27 chr11 109212582 109212637 -12631219 + RMER10A LTR ERVL 123 181 -261 5 1418 1116 94 0 0 chr11 109212637 109212796 -12631060 + (TTCCC)n Simple_repeat Simple_repeat 3 161 0 5 1418 371 285 105 27 chr11 109212796 109213036 -12630820 + RMER10A LTR ERVL 182 440 -2 5 1418 198 325 96 54 chr11 109213118 109213284 -12630572 - L2c LINE L2 -18 3369 3197 5 1418 308 270 117 29 chr11 109213381 109213484 -12630372 + PB1D10 SINE Alu 6 117 0 5 1418 450 212 0 29 chr11 109213488 109213590 -12630266 + B3A SINE B2 2 100 -98 5 1418 2406 152 7 29 chr11 109213592 109213689 -12630167 + MTC LTR MaLR 2 96 -325 5 1418 1259 94 61 0 chr11 109213689 109213870 -12629986 + B2_Mm1t SINE B2 2 193 0 5 1418 2406 152 7 29 chr11 109213870 109214192 -12629664 + MTC LTR MaLR 97 412 -9 5 1418 381 239 70 93 chr11 109214193 109214322 -12629534 + B3 SINE B2 89 214 -2 5 1418 355 157 14 28 chr11 109214992 109215064 -12628792 - ID4_ SINE ID -11 72 2 5 1418 219 167 0 0 chr11 109215928 109215970 -12627886 + CT-rich Low_complexity Low_complexity 4 45 0 5 1418 240 203 0 119 chr11 109215973 109216031 -12627825 - PB1D7 SINE Alu -8 112 59 5 1418 875 98 0 8 chr11 109216031 109216164 -12627692 + (TTC)n Simple_repeat Simple_repeat 1 132 0 5 1418 976 75 0 63 chr11 109216164 109216306 -12627550 - B1_Mus1 SINE Alu -15 133 1 5 1418 243 0 0 0 chr11 109216458 109216485 -12627371 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1418 23 0 0 0 chr11 109216641 109216664 -12627192 + AT_rich Low_complexity Low_complexity 1 23 0 5 1418 478 228 182 7 chr11 109216673 109216810 -12627046 - RSINE1 SINE B4 -4 161 1 5 1418 486 257 0 9 chr11 109217765 109217875 -12625981 + PB1D10 SINE Alu 1 109 -8 5 1418 414 340 85 20 chr11 109217895 109218096 -12625760 + B4A SINE B4 4 217 -75 5 1418 318 107 0 0 chr11 109218556 109218612 -12625244 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1418 198 0 0 0 chr11 109219062 109219084 -12624772 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1418 380 212 156 78 chr11 109219100 109219228 -12624628 + B4A SINE B4 149 286 -6 5 1418 369 179 0 152 chr11 109219294 109219386 -12624470 + ID_B1 SINE B4 143 220 -4 5 1418 999 77 42 0 chr11 109219386 109219625 -12624231 + (CA)n Simple_repeat Simple_repeat 1 249 0 5 1418 818 210 108 0 chr11 109219637 109219813 -12624043 + B3 SINE B2 3 197 -19 5 1418 199 288 90 90 chr11 109219974 109220096 -12623760 + MIRb SINE MIR 95 216 -52 5 1418 968 267 99 71 chr11 109220332 109220655 -12623201 - MARNA DNA Mariner -12 574 243 5 1418 593 257 189 4 chr11 109221312 109221575 -12622281 - L1MB5 LINE L1 -44 6139 5829 5 1418 402 298 29 9 chr11 109221633 109221738 -12622118 - B4A SINE B4 -64 228 122 5 1418 738 267 19 60 chr11 109221847 109222114 -12621742 - L1MB5 LINE L1 -341 5833 5578 5 1418 313 215 75 131 chr11 109223531 109223638 -12620218 + PB1D7 SINE Alu 17 120 0 5 1418 285 51 0 0 chr11 109224076 109224115 -12619741 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 5 1418 243 0 0 0 chr11 109225070 109225097 -12618759 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1418 596 247 71 0 chr11 109227144 109227298 -12616558 - RSINE1 SINE B4 0 165 1 5 1418 358 221 15 0 chr11 109227712 109227780 -12616076 - B1_Mur3 SINE Alu -51 98 30 5 1418 402 278 11 14 chr11 109228012 109228135 -12615721 + PB1D10 SINE Alu 9 128 -21 5 1418 318 287 29 19 chr11 109231089 109231192 -12612664 + B1F1 SINE Alu 2 105 -44 5 1418 233 263 81 48 chr11 109231192 109231210 -12612646 + B4A SINE B4 87 211 -81 5 1418 233 267 119 0 chr11 109232008 109232109 -12611747 - PB1D10 SINE Alu 0 117 5 5 1418 311 320 161 11 chr11 109232341 109232521 -12611335 + MIRb SINE MIR 21 231 -37 5 1418 330 289 12 129 chr11 109232758 109232921 -12610935 - B3 SINE B2 -11 205 62 5 1418 183 80 0 0 chr11 109233798 109233823 -12610033 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1418 1416 60 38 0 chr11 109233841 109234024 -12609832 - B2_Mm2 SINE B2 -5 190 1 5 1418 45 69 0 0 chr11 109234038 109234125 -12609731 + AT_rich Low_complexity Low_complexity 1 87 0 5 1418 780 229 95 0 chr11 109234307 109234486 -12609370 - B3 SINE B2 -20 196 1 5 1418 267 257 152 38 chr11 109234544 109234649 -12609207 - B1F SINE Alu -29 120 4 5 1418 765 211 45 17 chr11 109234692 109234870 -12608986 - B3 SINE B2 -32 184 2 5 1418 226 219 215 15 chr11 109234892 109234957 -12608899 - ID4 SINE ID -1 82 5 5 1418 297 219 0 17 chr11 109234980 109235054 -12608802 - B1F SINE Alu -2 147 49 5 1418 779 171 8 15 chr11 109235099 109235230 -12608626 - B1F SINE Alu -9 140 11 5 1418 1869 106 176 15 chr11 109235259 109235594 -12608262 - MTC LTR MaLR -23 398 10 5 1418 1163 75 14 0 chr11 109235621 109235768 -12608088 + B1_Mur4 SINE Alu 2 150 0 5 1418 324 247 37 0 chr11 109236641 109236722 -12607134 + PB1D10 SINE Alu 33 116 -1 5 1418 839 237 55 25 chr11 109237053 109237252 -12606604 + ID_B1 SINE B4 15 219 -5 5 1418 897 268 58 0 chr11 109237292 109237535 -12606321 - MER2 DNA MER2_type 0 345 89 5 1418 237 228 0 34 chr11 109238600 109238659 -12605197 + C-rich Low_complexity Low_complexity 4 60 0 5 1418 786 215 275 7 chr11 109238800 109239076 -12604780 - MTD LTR MaLR -14 405 56 5 1418 479 227 94 127 chr11 109239219 109239431 -12604425 - B3 SINE B2 0 216 12 5 1418 302 227 35 149 chr11 109240745 109240859 -12602997 - B1F SINE Alu -9 140 40 5 1418 315 0 0 0 chr11 109240885 109240920 -12602936 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 5 1418 45 0 0 0 chr11 109240972 109241017 -12602839 + AT_rich Low_complexity Low_complexity 1 45 0 5 1418 359 266 0 0 chr11 109241202 109241281 -12602575 - BC1_Mm scRNA scRNA -65 87 9 5 1418 422 236 0 61 chr11 109241664 109241763 -12602093 + RSINE1 SINE B4 64 156 -9 5 1418 294 238 69 35 chr11 109242743 109242830 -12601026 - PB1D10 SINE Alu -27 90 1 5 1418 233 140 39 20 chr11 109242860 109242911 -12600945 + (TATAG)n Simple_repeat Simple_repeat 1 52 0 5 1418 280 208 40 152 chr11 109242978 109243103 -12600753 - PB1D10 SINE Alu -6 111 1 5 1418 354 23 0 0 chr11 109243248 109243291 -12600565 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 5 1418 994 209 60 15 chr11 109243479 109243678 -12600178 - B3 SINE B2 0 216 9 5 1418 752 232 77 48 chr11 109243704 109243912 -12599944 - B3A SINE B2 0 216 3 5 1418 213 261 0 84 chr11 109244136 109244207 -12599649 + PB1D10 SINE Alu 1 65 -52 5 1418 229 250 0 91 chr11 109244241 109244307 -12599549 + 4.5SRNA scRNA scRNA 29 88 -6 5 1418 421 240 48 48 chr11 109244255 109244360 -12599496 + B1_Mur1 SINE Alu 42 146 -3 5 1418 1183 325 169 96 chr11 109244360 109245357 -12598499 - Cheshire DNA MER1_type -17 2403 1365 5 1418 585 249 62 96 chr11 109245357 109245566 -12598290 - ID_B1 SINE B4 -18 206 5 5 1418 1183 325 169 96 chr11 109245566 109246730 -12597126 - Cheshire DNA MER1_type -1056 1364 85 5 1418 645 212 61 30 chr11 109246952 109247117 -12596739 - B3A SINE B2 -14 184 15 5 1418 279 0 0 0 chr11 109247750 109247781 -12596075 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1418 924 36 0 0 chr11 109247781 109247893 -12595963 - B1_Mm SINE Alu 0 147 36 5 1418 327 247 10 106 chr11 109247830 109247934 -12595922 - RLTR25A LTR ERVK -531 572 479 5 1418 466 16 32 0 chr11 109248310 109248373 -12595483 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1418 351 267 0 0 chr11 109248657 109248732 -12595124 + PB1D10 SINE Alu 29 103 -14 5 1418 553 254 115 7 chr11 109249373 109249512 -12594344 + B3 SINE B2 61 214 -2 5 1418 459 273 22 88 chr11 109249527 109249708 -12594148 - B3A SINE B2 -10 188 20 5 1418 523 266 23 15 chr11 109249780 109249910 -12593946 - B1F SINE Alu -18 131 1 5 1418 245 289 0 0 chr11 109250482 109250534 -12593322 - ID_B1 SINE B4 -9 215 164 5 1418 222 230 117 39 chr11 109250534 109250559 -12593297 - PB1 SINE Alu -8 119 37 5 1418 360 111 0 0 chr11 109250938 109250992 -12592864 + (CTAG)n Simple_repeat Simple_repeat 2 55 0 5 1418 239 294 183 11 chr11 109251302 109251395 -12592461 + PB1D10 SINE Alu 9 117 0 5 1418 495 305 127 10 chr11 109251500 109251705 -12592151 + B4A SINE B4 58 286 -6 5 1418 342 0 0 0 chr11 109251764 109251802 -12592054 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1418 1229 40 14 0 chr11 109251886 109252034 -12591822 - B1_Mur4 SINE Alu 0 150 1 5 1418 528 106 115 21 chr11 109252358 109252454 -12591402 + B3 SINE B2 1 105 -111 5 1418 507 334 111 44 chr11 109252794 109253135 -12590721 + Charlie1 DNA MER1_type 1905 2268 -513 5 1418 320 235 0 56 chr11 109253467 109253557 -12590299 - PB1D7 SINE Alu -1 119 35 5 1418 376 249 69 0 chr11 109254460 109254543 -12589313 + PB1D10 SINE Alu 2 91 -56 5 1418 853 221 86 43 chr11 109254741 109254996 -12588860 - B4A SINE B4 -24 268 3 5 1418 581 207 63 111 chr11 109255014 109255204 -12588652 - B3 SINE B2 0 216 36 6 1418 635 167 104 15 chr11 109255231 109255365 -12588491 - B1_Mur1 SINE Alu -1 148 3 6 1418 377 260 0 0 chr11 109255531 109255608 -12588248 - ID_B1 SINE B4 0 224 148 6 1418 292 305 26 71 chr11 109255741 109255854 -12588002 + L2a LINE L2 3315 3422 -4 6 1418 325 305 18 37 chr11 109256345 109256454 -12587402 + PB1D10 SINE Alu 1 107 -10 6 1418 480 86 0 0 chr11 109256454 109256524 -12587332 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1418 276 262 10 72 chr11 109256543 109256643 -12587213 + PB1D10 SINE Alu 24 113 -36 6 1418 353 210 16 87 chr11 109257039 109257146 -12586710 + B1F1 SINE Alu 5 103 -46 6 1418 603 0 0 0 chr11 109258986 109259053 -12584803 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1418 183 42 0 0 chr11 109260568 109260592 -12583264 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1418 203 194 0 0 chr11 109261343 109261379 -12582477 + T-rich Low_complexity Low_complexity 1 36 0 6 1418 439 255 10 10 chr11 109261742 109261848 -12582008 - PB1D10 SINE Alu -1 148 25 6 1418 288 0 0 0 chr11 109262379 109262411 -12581445 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1418 535 317 160 4 chr11 109263293 109263518 -12580338 + B4A SINE B4 26 285 -7 6 1418 297 0 0 0 chr11 109263518 109263551 -12580305 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1418 841 180 126 20 chr11 109263676 109263874 -12579982 - URR1B DNA MER1_type -6 219 1 6 1418 394 287 28 0 chr11 109263948 109264056 -12579800 - PB1D7 SINE Alu -5 115 5 6 1418 826 275 60 54 chr11 109264060 109264461 -12579395 + RLTR11A2 LTR ERVK 1 414 -27 6 1418 538 282 151 28 chr11 109264543 109264795 -12579061 - B4A SINE B4 -8 284 2 6 1418 359 263 0 8 chr11 109265112 109265231 -12578625 + GA-rich Low_complexity Low_complexity 3 120 0 6 1418 947 232 107 15 chr11 109265242 109265505 -12578351 + B4A SINE B4 6 292 0 6 1418 319 294 0 0 chr11 109265505 109265607 -12578249 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1418 306 0 0 0 chr11 109265634 109265668 -12578188 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1418 319 186 10 10 chr11 109265782 109265880 -12577976 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 1418 221 333 0 0 chr11 109265989 109266061 -12577795 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1418 315 0 0 0 chr11 109266111 109266146 -12577710 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1418 228 35 0 0 chr11 109266498 109266527 -12577329 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1418 823 191 0 14 chr11 109266744 109266887 -12576969 + B1_Mur1 SINE Alu 3 143 -6 6 1418 845 245 32 5 chr11 109266914 109267131 -12576725 + ID_B1 SINE B4 2 224 0 6 1418 841 194 206 0 chr11 109267503 109267673 -12576183 + B3 SINE B2 1 205 -11 6 1418 472 232 21 0 chr11 109267716 109267811 -12576045 - PB1D10 SINE Alu -11 106 10 6 1418 303 361 19 0 chr11 109267724 109267832 -12576024 - ID_B1 SINE B4 -45 179 70 6 1418 561 291 36 65 chr11 109267934 109268210 -12575646 + B4A SINE B4 2 269 -23 6 1418 721 222 21 0 chr11 109268416 109268560 -12575296 + B1F1 SINE Alu 1 147 -2 6 1418 329 313 129 0 chr11 109268915 109269062 -12574794 - MLT1H2 LTR MaLR -15 474 309 6 1418 215 190 0 17 chr11 109269154 109269213 -12574643 + (TATG)n Simple_repeat Simple_repeat 1 58 0 6 1418 264 253 80 33 chr11 109269213 109269364 -12574492 + RLTR22_Mur LTR ERVK 1308 1465 -383 6 1418 363 310 0 0 chr11 109269369 109269440 -12574416 - RSINE1 SINE B4 -94 71 1 6 1418 495 243 184 11 chr11 109269464 109269643 -12574213 - B3 SINE B2 -2 214 5 6 1418 751 246 15 94 chr11 109269643 109269845 -12574011 - B3 SINE B2 -29 187 2 6 1418 645 221 82 30 chr11 109270280 109270415 -12573441 + B1_Mur2 SINE Alu 1 142 -7 6 1418 180 0 0 0 chr11 109270417 109270437 -12573419 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1418 470 300 0 122 chr11 109270457 109270605 -12573251 + B1F SINE Alu 5 134 -15 6 1418 399 141 0 0 chr11 109270606 109270698 -12573158 + (GA)n Simple_repeat Simple_repeat 1 92 0 6 1418 614 259 23 81 chr11 109270698 109270870 -12572986 + RSINE1 SINE B4 2 163 -2 6 1418 21 36 0 0 chr11 109270874 109270902 -12572954 + AT_rich Low_complexity Low_complexity 1 28 0 6 1418 515 275 28 84 chr11 109270922 109271065 -12572791 + RSINE1 SINE B4 25 159 -6 6 1418 472 211 121 30 chr11 109271128 109271260 -12572596 + B1_Mur1 SINE Alu 1 144 -5 6 1418 387 0 0 0 chr11 109271264 109271307 -12572549 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1418 1755 176 10 10 chr11 109271310 109271615 -12572241 + MTD LTR MaLR 113 417 -2 6 1418 536 295 65 59 chr11 109271633 109271954 -12571902 + L1MB8 LINE L1 5626 5948 -230 6 1418 215 286 0 0 chr11 109272140 109272182 -12571674 + ID4_ SINE ID 17 58 -25 6 1418 240 270 26 0 chr11 109272246 109272361 -12571495 + GA-rich Low_complexity Low_complexity 1 118 0 6 1418 665 140 0 45 chr11 109272574 109272686 -12571170 + PB1D9 SINE Alu 2 108 -12 6 1418 342 0 0 0 chr11 109272686 109272724 -12571132 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1418 279 211 27 40 chr11 109272959 109273033 -12570823 + PB1D7 SINE Alu 40 112 -8 6 1418 510 275 255 51 chr11 109273429 109273688 -12570168 - MTEa LTR MaLR -8 371 60 6 1418 358 234 138 0 chr11 109273688 109273782 -12570074 - MTE-int LTR MaLR -697 883 777 6 1418 279 0 0 0 chr11 109273835 109273866 -12569990 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1418 497 286 189 10 chr11 109273940 109274140 -12569716 - MTE-int LTR MaLR -79 1501 1266 6 1418 479 255 0 39 chr11 109274140 109274242 -12569614 + B3A SINE B2 1 98 -100 6 1418 1930 246 42 109 chr11 109274236 109274897 -12568959 - MTE-int LTR MaLR -297 1283 667 6 1418 189 0 0 0 chr11 109276023 109276044 -12567812 + (CTG)n Simple_repeat Simple_repeat 1 21 0 6 1418 648 204 90 21 chr11 109276044 109276189 -12567667 - B3 SINE B2 -61 155 1 6 1418 905 281 167 42 chr11 109276190 109276550 -12567306 + MTD LTR MaLR 1 405 -14 6 1418 1256 21 7 0 chr11 109276582 109276727 -12567129 + B1_Mus2 SINE Alu 2 147 0 6 1418 450 311 13 7 chr11 109276973 109277122 -12566734 - MER53 DNA hAT -14 179 30 6 1418 264 327 19 38 chr11 109277454 109277559 -12566297 - MLT1B LTR MaLR -84 306 204 6 1418 464 206 0 11 chr11 109277715 109277897 -12565959 + GA-rich Low_complexity Low_complexity 1 180 0 6 1418 716 182 87 8 chr11 109278052 109278179 -12565677 + B1_Mur1 SINE Alu 13 149 0 6 1418 207 0 0 0 chr11 109278556 109278579 -12565277 + (GGA)n Simple_repeat Simple_repeat 1 23 0 6 1418 332 43 0 21 chr11 109278720 109278767 -12565089 + (CCCCCA)n Simple_repeat Simple_repeat 2 47 0 6 1418 232 324 59 0 chr11 109279948 109280016 -12563840 + B3A SINE B2 1 72 -126 6 1418 222 91 0 0 chr11 109280082 109280115 -12563741 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 6 1418 249 163 0 0 chr11 109280170 109280213 -12563643 - ID2 SINE ID -40 43 1 6 1418 442 278 19 15 chr11 109280549 109280674 -12563182 + PB1D10 SINE Alu 8 129 -18 6 1418 1831 124 35 75 chr11 109282838 109283265 -12560591 - RMER17C LTR ERVK 0 410 1 6 1418 488 275 13 66 chr11 109283391 109283543 -12560313 + B1F SINE Alu 5 148 -1 6 1418 26 0 0 0 chr11 109283543 109283569 -12560287 + AT_rich Low_complexity Low_complexity 1 26 0 6 1418 681 212 51 66 chr11 109283634 109283831 -12560025 + B3A SINE B2 5 198 0 6 1418 518 268 115 7 chr11 109283857 109283996 -12559860 + RSINE1 SINE B4 4 157 -8 6 1418 1511 26 0 68 chr11 109284088 109284248 -12559608 + B2_Mm1a SINE B2 1 160 -33 6 1418 207 0 0 0 chr11 109284248 109284271 -12559585 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1418 1511 26 0 68 chr11 109284271 109284317 -12559539 + B2_Mm1a SINE B2 161 193 0 6 1418 473 211 0 69 chr11 109284322 109284424 -12559432 + B1F SINE Alu 41 135 -14 6 1418 358 246 112 30 chr11 109284449 109284583 -12559273 + RSINE1 SINE B4 3 147 -18 6 1418 405 222 24 24 chr11 109284950 109285033 -12558823 - MLT1A0 LTR MaLR -48 317 235 6 1418 1086 301 57 12 chr11 109285139 109285475 -12558381 - MTEa LTR MaLR 0 379 29 6 1418 252 182 0 52 chr11 109285475 109285533 -12558323 - B1_Mus1 SINE Alu -88 60 6 6 1418 525 32 0 0 chr11 109285545 109285608 -12558248 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 6 1418 341 330 68 0 chr11 109285613 109285627 -12558229 + B4 SINE B4 73 198 -94 6 1418 508 260 10 0 chr11 109285627 109285731 -12558125 + B1F SINE Alu 5 109 -40 6 1418 424 325 33 33 chr11 109285835 109286045 -12557811 + L1MC4a LINE L1 6383 6592 -1290 6 1418 273 309 45 0 chr11 109286055 109286165 -12557691 + L1MC4a LINE L1 7788 7902 -140 6 1418 326 176 51 63 chr11 109286302 109286381 -12557475 + ID_B1 SINE B4 141 218 -6 6 1418 1209 68 0 0 chr11 109288613 109288761 -12555095 + B1_Mus1 SINE Alu 1 148 0 6 1418 405 238 48 0 chr11 109288781 109288886 -12554970 - PB1D10 SINE Alu -7 110 1 6 1418 200 106 0 60 chr11 109289013 109289063 -12554793 + T-rich Low_complexity Low_complexity 1 47 0 6 1418 1179 68 0 0 chr11 109289063 109289210 -12554646 - B1_Mus2 SINE Alu 0 147 1 6 1418 221 160 60 0 chr11 109289230 109289296 -12554560 + GA-rich Low_complexity Low_complexity 1 69 0 6 1418 597 204 0 27 chr11 109289634 109289745 -12554111 - B1_Mus1 SINE Alu -1 147 40 6 1418 243 0 0 0 chr11 109289766 109289793 -12554063 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1418 1066 77 21 0 chr11 109289793 109289936 -12553920 - B1_Mus1 SINE Alu -2 146 1 6 1418 233 271 0 0 chr11 109290508 109290556 -12553300 - ID4_ SINE ID -2 81 34 6 1418 260 263 0 17 chr11 109290671 109290729 -12553127 - RSINE1 SINE B4 -108 57 1 6 1418 402 120 0 0 chr11 109291798 109291873 -12551983 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1418 587 277 158 0 chr11 109292027 109292211 -12551645 + ID_B1 SINE B4 3 215 -9 7 1418 373 291 12 0 chr11 109292260 109292346 -12551510 + ID_B1 SINE B4 87 173 -51 7 1418 327 315 35 18 chr11 109292346 109292373 -12551483 + PB1D9 SINE Alu 6 120 0 7 1418 1179 122 0 0 chr11 109292618 109292873 -12550983 + (CA)n Simple_repeat Simple_repeat 1 255 0 7 1418 274 261 31 0 chr11 109293721 109293786 -12550070 + ID4 SINE ID 15 81 -2 7 1418 306 67 0 0 chr11 109293845 109293890 -12549966 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1418 348 284 66 20 chr11 109294366 109294517 -12549339 - HAL1-3A_ME LINE L1 -724 2134 1977 7 1418 378 169 0 0 chr11 109294528 109294617 -12549239 + (TG)n Simple_repeat Simple_repeat 1 89 0 7 1418 1181 49 14 0 chr11 109294858 109295002 -12548854 + B1_Mus2 SINE Alu 2 147 0 7 1418 210 105 0 0 chr11 109295002 109295040 -12548816 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1418 365 240 29 77 chr11 109295576 109295680 -12548176 - PB1D10 SINE Alu -16 101 3 7 1418 442 281 131 41 chr11 109296213 109296480 -12547376 + B4A SINE B4 2 292 0 7 1418 398 293 30 0 chr11 109296591 109296690 -12547166 + RSINE1 SINE B4 45 146 -19 7 1418 403 252 50 10 chr11 109296746 109296846 -12547010 + B1F SINE Alu 46 149 0 7 1418 592 205 48 16 chr11 109296876 109297000 -12546856 - B3A SINE B2 -68 130 3 7 1418 563 241 14 62 chr11 109297480 109297626 -12546230 - B1F SINE Alu 0 149 11 7 1418 259 122 29 12 chr11 109297803 109297865 -12545991 - B1_Mus2 SINE Alu 0 149 88 7 1418 201 39 0 0 chr11 109298537 109298563 -12545293 + (G)n Simple_repeat Simple_repeat 1 26 0 7 1418 584 191 8 17 chr11 109298926 109299043 -12544813 - PB1D9 SINE Alu -2 118 3 7 1418 243 270 67 13 chr11 109299043 109299113 -12544743 - ID4 SINE ID -4 79 5 7 1418 336 164 33 0 chr11 109299238 109299299 -12544557 - B4 SINE B4 -105 187 125 7 1418 545 183 39 0 chr11 109299773 109299877 -12543979 + PB1D9 SINE Alu 1 108 -12 7 1418 1043 96 154 12 chr11 109299878 109300047 -12543809 + B2_Mm2 SINE B2 3 195 0 7 1418 189 0 0 0 chr11 109300259 109300280 -12543576 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1418 1123 72 0 0 chr11 109300303 109300441 -12543415 + B1_Mus2 SINE Alu 1 138 -9 7 1418 522 0 0 0 chr11 109300441 109300499 -12543357 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 7 1418 479 286 86 0 chr11 109300513 109300653 -12543203 + RSINE1 SINE B4 2 153 -12 7 1418 344 41 41 0 chr11 109300664 109300713 -12543143 + (GGGAGA)n Simple_repeat Simple_repeat 5 55 0 7 1418 222 263 0 50 chr11 109300748 109300808 -12543048 + ID2 SINE ID 16 72 -11 7 1418 308 250 27 82 chr11 109301108 109301253 -12542603 - PB1D10 SINE Alu 0 149 15 7 1418 322 291 222 6 chr11 109301812 109301992 -12541864 - Charlie5 DNA MER1_type 0 2624 2406 7 1418 704 195 0 23 chr11 109302263 109302412 -12541444 - B1F SINE Alu -3 146 1 7 1418 189 0 0 0 chr11 109302419 109302440 -12541416 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1418 901 165 125 60 chr11 109302571 109302771 -12541085 + B3 SINE B2 4 216 0 7 1418 454 219 133 0 chr11 109302772 109302877 -12540979 + RCHARR1 DNA MER1_type 98 216 -758 7 1418 1927 235 29 64 chr11 109302937 109303350 -12540506 + RCHARR1 DNA MER1_type 330 727 -247 7 1418 345 24 0 0 chr11 109303350 109303392 -12540464 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1418 272 194 113 0 chr11 109303393 109303455 -12540401 - ID4 SINE ID -13 70 2 7 1418 1927 235 29 64 chr11 109303455 109303552 -12540304 + RCHARR1 DNA MER1_type 728 824 -150 7 1418 237 233 0 0 chr11 109304009 109304052 -12539804 + RSINE1 SINE B4 3 45 -120 7 1418 273 57 0 0 chr11 109304133 109304168 -12539688 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1418 504 0 0 0 chr11 109304169 109304225 -12539631 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1418 1218 93 0 0 chr11 109304225 109304386 -12539470 - B2_Mm2 SINE B2 -34 161 1 7 1418 338 256 0 25 chr11 109304436 109304516 -12539340 + ID4_ SINE ID 4 81 -2 7 1418 549 0 0 0 chr11 109304517 109304578 -12539278 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 1418 530 289 29 11 chr11 109304665 109304840 -12539016 + L1MA5 LINE L1 6115 6292 -8 7 1418 1009 121 42 18 chr11 109305321 109305489 -12538367 - B2_Mm2 SINE B2 -23 172 1 7 1418 239 292 99 8 chr11 109305602 109305733 -12538123 - L2a LINE L2 -35 3391 3249 7 1418 669 191 198 22 chr11 109305759 109305941 -12537915 - ID_B1 SINE B4 -10 214 1 7 1418 610 204 8 87 chr11 109306046 109306172 -12537684 + B3 SINE B2 68 194 -22 7 1418 361 281 154 12 chr11 109306292 109306454 -12537402 - L2a LINE L2 -605 2814 2630 7 1418 595 233 37 8 chr11 109306455 109306589 -12537267 + ID_B1 SINE B4 80 217 -7 7 1418 261 83 0 0 chr11 109306611 109306647 -12537209 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 7 1418 250 339 16 97 chr11 109307272 109307458 -12536398 + MT2B LTR ERVL 87 257 -344 7 1418 595 243 0 0 chr11 109307359 109307470 -12536386 + ID_B1 SINE B4 84 194 -30 7 1418 486 252 24 16 chr11 109307470 109307483 -12536373 + B1F1 SINE Alu 3 127 -22 7 1418 225 94 0 0 chr11 109307483 109307515 -12536341 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 7 1418 1006 254 18 0 chr11 109307709 109307926 -12535930 + ID_B1 SINE B4 4 224 0 7 1418 986 216 14 0 chr11 109308179 109308387 -12535469 + B3 SINE B2 1 211 -5 7 1418 1080 200 10 0 chr11 109308395 109308600 -12535256 - B3 SINE B2 -2 214 8 7 1418 479 273 104 12 chr11 109308690 109308853 -12535003 - B4A SINE B4 -7 285 108 7 1418 356 235 52 16 chr11 109308937 109309046 -12534810 - B1F SINE Alu 0 120 9 7 1418 433 318 23 23 chr11 109309211 109309343 -12534513 - B1F2 SINE Alu -16 133 2 7 1418 268 265 11 78 chr11 109309263 109309353 -12534503 - MT2B2 LTR ERVL -345 239 156 7 1418 767 161 13 0 chr11 109309359 109309514 -12534342 + CT-rich Low_complexity Low_complexity 4 160 0 7 1418 258 105 0 0 chr11 109309526 109309564 -12534292 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 7 1418 722 207 82 12 chr11 109309593 109309764 -12534092 - B3A SINE B2 -15 183 1 7 1418 584 280 57 24 chr11 109309832 109310044 -12533812 + MER58B DNA MER1_type 123 341 0 7 1418 1032 252 10 0 chr11 109310091 109310254 -12533602 + ID_B1 SINE B4 8 215 -9 7 1418 220 231 54 71 chr11 109310254 109310297 -12533559 + PB1D7 SINE Alu 66 111 -9 7 1418 399 41 0 0 chr11 109310297 109310346 -12533510 + (CAAG)n Simple_repeat Simple_repeat 2 50 0 7 1418 220 231 54 71 chr11 109310346 109310358 -12533498 + PB1D7 SINE Alu 112 120 0 7 1418 1241 54 0 7 chr11 109310591 109310740 -12533116 - B1_Mus1 SINE Alu 0 148 1 7 1418 283 211 9 112 chr11 109310762 109310869 -12532987 - PB1D10 SINE Alu -19 98 3 7 1418 360 272 12 24 chr11 109310962 109311045 -12532811 - RSINE1 SINE B4 -48 117 36 7 1418 398 198 20 108 chr11 109311172 109311274 -12532582 + PB1D7 SINE Alu 28 120 0 7 1418 419 260 60 3 chr11 109311399 109311543 -12532313 + Lx8 LINE L1 6888 7040 -656 7 1418 489 242 72 20 chr11 109311556 109311708 -12532148 + Lx8 LINE L1 7114 7273 -200 7 1418 630 99 0 0 chr11 109311766 109311857 -12531999 + (GGAA)n Simple_repeat Simple_repeat 1 91 0 7 1418 213 39 0 0 chr11 109313112 109313138 -12530718 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1418 27 62 0 0 chr11 109313415 109313463 -12530393 + AT_rich Low_complexity Low_complexity 1 48 0 7 1418 773 189 63 32 chr11 109313463 109313621 -12530235 - RSINE1 SINE B4 0 165 3 7 177 203 171 0 0 chr11 109314020 109314061 -12529795 + T-rich Low_complexity Low_complexity 1 41 0 7 1419 21 0 0 0 chr11 109314816 109314837 -12529019 + AT_rich Low_complexity Low_complexity 1 21 0 7 1419 608 254 0 7 chr11 109314838 109314981 -12528875 - B1F SINE Alu -7 142 1 7 1419 1261 41 0 0 chr11 109315210 109315357 -12528499 - B1_Mus2 SINE Alu 0 147 1 7 1419 270 0 0 0 chr11 109315370 109315400 -12528456 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 7 1419 329 214 0 54 chr11 109315402 109315476 -12528380 - PB1D9 SINE Alu -4 116 47 7 1419 376 232 19 39 chr11 109315555 109315658 -12528198 - RLTR12B LTR ERVK -161 367 267 7 1419 818 169 42 7 chr11 109315748 109315891 -12527965 - B1F2 SINE Alu -1 148 1 7 1419 796 206 34 7 chr11 109315980 109316127 -12527729 + RSINE1 SINE B4 2 152 -13 7 1419 254 242 143 0 chr11 109317326 109317417 -12526439 - B1F2 SINE Alu -45 104 1 7 1419 431 257 64 0 chr11 109317417 109317457 -12526399 - B4A SINE B4 -207 85 39 7 1419 180 0 0 0 chr11 109317710 109317730 -12526126 + (GACTG)n Simple_repeat Simple_repeat 5 24 0 7 1419 281 315 41 0 chr11 109317746 109317819 -12526037 + MER58B DNA MER1_type 221 296 -45 7 1419 500 220 214 75 chr11 109318490 109318677 -12525179 - B3 SINE B2 -3 213 1 7 1419 1296 112 0 5 chr11 109318789 109318978 -12524878 + B2_Mm2 SINE B2 6 193 -2 7 1419 584 282 98 56 chr11 109320078 109320292 -12523564 + ID_B1 SINE B4 1 223 -1 7 1419 434 191 109 45 chr11 109320464 109320574 -12523282 - PB1D10 SINE Alu 0 117 1 7 1419 415 145 0 24 chr11 109320931 109321016 -12522840 + GA-rich Low_complexity Low_complexity 3 85 0 7 1419 360 250 0 12 chr11 109321440 109321525 -12522331 + PB1D10 SINE Alu 1 84 -33 7 1419 222 91 0 0 chr11 109322165 109322198 -12521658 + (GGGGA)n Simple_repeat Simple_repeat 5 37 0 7 1419 324 203 0 33 chr11 109322294 109322355 -12521501 + B1_Mur4 SINE Alu 2 60 -90 7 1419 565 133 18 54 chr11 109322395 109322506 -12521350 + B1_Mur4 SINE Alu 43 149 -1 7 1419 1234 35 0 7 chr11 109322509 109322648 -12521208 + B1_Mm SINE Alu 1 139 -8 7 1419 522 0 0 0 chr11 109322648 109322706 -12521150 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 8 1419 510 236 13 9 chr11 109322723 109322962 -12520894 + (TATG)n Simple_repeat Simple_repeat 1 240 0 8 1419 809 277 61 73 chr11 109323358 109323685 -12520171 - MER2 DNA MER2_type -22 323 1 8 1419 858 229 14 28 chr11 109323809 109324025 -12519831 + B3 SINE B2 1 213 -3 8 1419 405 241 0 0 chr11 109324247 109324326 -12519530 - ID4 SINE ID -1 82 4 8 1419 492 248 57 50 chr11 109324940 109325080 -12518776 - ID_B1 SINE B4 -2 222 82 8 1419 796 163 41 28 chr11 109325385 109325530 -12518326 + B1_Mus2 SINE Alu 1 147 0 8 1419 207 0 0 0 chr11 109325536 109325559 -12518297 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 8 1419 331 131 47 47 chr11 109326123 109326187 -12517669 + B1F SINE Alu 80 143 -6 8 1419 385 143 0 0 chr11 109326134 109326190 -12517666 + ID_B1 SINE B4 166 221 -3 8 1419 1162 74 0 0 chr11 109326195 109326343 -12517513 + B1_Mus1 SINE Alu 1 148 0 8 1419 316 213 66 13 chr11 109326640 109326716 -12517140 - PB1D10 SINE Alu -14 103 24 8 1419 666 100 39 77 chr11 109326803 109326910 -12516946 + BC1_Mm scRNA scRNA 1 99 -53 8 1419 946 118 34 14 chr11 109326910 109327056 -12516800 + B1_Mur4 SINE Alu 2 150 0 8 1419 666 100 39 77 chr11 109327056 109327078 -12516778 + BC1_Mm scRNA scRNA 100 125 -27 8 1419 817 180 22 14 chr11 109327084 109327272 -12516584 + B3 SINE B2 1 192 -3 8 1419 1062 56 0 78 chr11 109327275 109327429 -12516427 + B1_Mus1 SINE Alu 2 143 -5 8 1419 613 226 0 53 chr11 109327437 109327511 -12516345 - RSINE1 SINE B4 0 165 94 8 1419 4291 22 12 2 chr11 109327511 109327999 -12515857 - MT2_Mm LTR ERVL 0 493 1 8 1419 613 226 0 53 chr11 109327999 109328055 -12515801 - RSINE1 SINE B4 -72 93 42 8 1419 204 40 0 0 chr11 109328721 109328746 -12515110 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1419 786 131 34 68 chr11 109329149 109329296 -12514560 - B1_Mur2 SINE Alu -1 148 7 8 1419 281 232 47 125 chr11 109329213 109329341 -12514515 - MT2B LTR ERVL -361 240 123 8 1419 672 279 84 42 chr11 109329692 109329905 -12513951 - ID_B1 SINE B4 0 224 3 8 1419 603 197 0 80 chr11 109330210 109330348 -12513508 - B1_Mur2 SINE Alu -2 147 21 8 1419 480 214 106 45 chr11 109330971 109331103 -12512753 + ID_B1 SINE B4 75 214 -10 8 1419 210 284 145 29 chr11 109331249 109331309 -12512547 + PB1D10 SINE Alu 36 104 -13 8 1419 732 23 0 0 chr11 109331309 109331395 -12512461 + (GA)n Simple_repeat Simple_repeat 2 87 0 8 1419 232 145 14 55 chr11 109331453 109331526 -12512330 + A-rich Low_complexity Low_complexity 2 71 0 8 1419 340 293 39 29 chr11 109332351 109332453 -12511403 + B1F SINE Alu 35 137 -12 8 1419 186 207 0 147 chr11 109333122 109333190 -12510666 + L2b LINE L2 3296 3353 -22 8 1419 246 32 0 0 chr11 109333253 109333284 -12510572 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1419 25 0 0 0 chr11 109334508 109334533 -12509323 + GC_rich Low_complexity Low_complexity 1 25 0 8 1419 394 255 10 21 chr11 109336104 109336200 -12507656 - PB1D10 SINE Alu -1 116 22 8 1419 241 242 83 120 chr11 109336219 109336235 -12507621 - MT2B LTR ERVL -351 250 193 8 1419 394 90 0 3 chr11 109336235 109336303 -12507553 - B1_Mur4 SINE Alu -78 70 4 8 1419 282 164 0 103 chr11 109336249 109336317 -12507539 - B4 SINE B4 -151 141 81 8 1419 214 350 0 0 chr11 109336490 109336550 -12507306 - B1F2 SINE Alu -89 60 1 8 1419 1086 77 7 0 chr11 109336698 109336841 -12507015 + B1_Mus1 SINE Alu 5 148 0 8 1419 336 291 126 0 chr11 109337041 109337144 -12506712 - PB1D10 SINE Alu -1 116 1 8 1419 360 43 0 0 chr11 109337646 109337692 -12506164 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1419 243 0 0 0 chr11 109339001 109339028 -12504828 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1419 31 0 0 0 chr11 109339892 109339923 -12503933 + AT_rich Low_complexity Low_complexity 1 31 0 8 1419 962 166 193 0 chr11 109339923 109340104 -12503752 - B3 SINE B2 0 216 1 8 1419 383 151 11 0 chr11 109340183 109340276 -12503580 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 1419 651 167 0 0 chr11 109340367 109340590 -12503266 + (TG)n Simple_repeat Simple_repeat 1 223 0 8 1419 749 220 36 78 chr11 109340595 109340678 -12503178 - B4A SINE B4 0 292 211 8 1419 1304 118 11 0 chr11 109340678 109340865 -12502991 - B2_Mm1t SINE B2 -4 189 1 8 1419 749 220 36 78 chr11 109340865 109340973 -12502883 - B4A SINE B4 -82 210 109 8 1419 504 0 0 0 chr11 109340973 109341029 -12502827 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1419 340 277 10 10 chr11 109341090 109341192 -12502664 - B4A SINE B4 -190 102 1 8 1419 271 257 206 10 chr11 109341449 109341551 -12502305 - L2a LINE L2 -6 3420 3299 8 1419 190 303 14 60 chr11 109342138 109342258 -12501598 - MIR SINE MIR -97 165 56 8 1419 379 253 0 0 chr11 109342279 109342358 -12501498 + ID4 SINE ID 1 79 -4 8 1419 265 275 49 12 chr11 109342376 109342457 -12501399 + B4A SINE B4 10 93 -199 8 1419 239 272 108 101 chr11 109342900 109343039 -12500817 + B4 SINE B4 84 223 -69 8 1419 217 261 67 124 chr11 109343060 109343165 -12500691 + B4A SINE B4 2 100 -192 8 1419 295 294 44 0 chr11 109343196 109343264 -12500592 + B4 SINE B4 222 292 0 8 1419 232 27 54 0 chr11 109343302 109343339 -12500517 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1419 330 285 52 37 chr11 109343344 109343479 -12500377 + L1MC5 LINE L1 7610 7746 -215 8 1419 247 290 72 0 chr11 109343486 109343555 -12500301 - MTEb LTR MaLR -17 362 289 8 1419 633 278 98 16 chr11 109343793 109343987 -12499869 + B3 SINE B2 1 210 -6 8 1419 749 269 66 15 chr11 109344001 109344054 -12499802 + B3 SINE B2 1 62 -154 8 1419 1337 95 5 36 chr11 109344054 109344250 -12499606 - B2_Mm2 SINE B2 -4 191 2 8 1419 749 269 66 15 chr11 109344250 109344392 -12499464 + B3 SINE B2 63 205 -11 8 1419 746 260 11 16 chr11 109344525 109344709 -12499147 + B3A SINE B2 1 183 -15 8 1419 1001 135 0 0 chr11 109345402 109345550 -12498306 - B1_Mus1 SINE Alu 0 148 1 8 1419 345 155 13 78 chr11 109345574 109345651 -12498205 - MTEb LTR MaLR 0 379 308 8 1419 285 264 28 0 chr11 109345673 109345745 -12498111 + RMER30 DNA MER1_type 12 85 -117 8 1419 288 0 0 0 chr11 109346024 109346056 -12497800 + (TTAGG)n Simple_repeat Simple_repeat 2 33 0 8 1419 246 62 0 0 chr11 109346056 109346087 -12497769 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1419 1838 211 57 11 chr11 109346091 109346459 -12497397 + MTD LTR MaLR 22 406 -13 8 1419 196 316 0 73 chr11 109346734 109346816 -12497040 + L2a LINE L2 3323 3398 -28 8 1419 231 36 0 0 chr11 109347443 109347471 -12496385 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 8 1419 957 268 96 11 chr11 109347764 109348025 -12495831 - B4 SINE B4 0 292 10 8 1419 852 201 0 19 chr11 109348954 109349111 -12494745 + RSINE1 SINE B4 11 164 -1 8 1419 613 242 0 75 chr11 109349133 109349294 -12494562 - B1_Mur1 SINE Alu 0 149 1 8 1419 319 268 70 191 chr11 109349743 109349900 -12493956 + ID_B1 SINE B4 80 217 -7 8 1419 734 214 126 53 chr11 109349959 109350166 -12493690 - ID_B1 SINE B4 -1 223 2 8 1419 283 207 46 0 chr11 109350370 109350457 -12493399 - L1ME2z LINE L1 -14 6430 6340 8 1419 770 284 42 9 chr11 109350510 109350727 -12493129 - ID_B1 SINE B4 0 224 1 8 1419 267 31 0 0 chr11 109350825 109350857 -12492999 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1419 205 330 22 22 chr11 109350960 109351050 -12492806 + MIR3 SINE MIR 114 203 -5 8 1419 192 203 0 135 chr11 109351027 109351101 -12492755 - MIRc SINE MIR -84 184 121 8 1419 495 277 34 6 chr11 109352024 109352195 -12491661 - B3 SINE B2 -11 184 2 8 1419 262 233 38 0 chr11 109352343 109352476 -12491380 + (TCCA)n Simple_repeat Simple_repeat 1 138 0 8 1419 313 279 135 58 chr11 109352488 109352644 -12491212 - L2c LINE L2 -36 3351 3184 8 1419 814 250 164 8 chr11 109353538 109353800 -12490056 - RMER21B LTR ERV1 -275 567 265 8 1419 424 237 11 0 chr11 109353962 109354055 -12489801 + B1F1 SINE Alu 1 94 -55 8 1419 481 317 86 12 chr11 109354116 109354279 -12489577 + MLT1C LTR MaLR 217 391 -76 8 1419 189 0 0 0 chr11 109354324 109354345 -12489511 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1419 405 0 0 0 chr11 109354469 109354514 -12489342 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1419 396 0 0 0 chr11 109354514 109354557 -12489299 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 1419 297 300 38 0 chr11 109354676 109354756 -12489100 + PB1D7 SINE Alu 1 83 -37 8 1419 528 266 8 31 chr11 109354815 109354943 -12488913 - B1_Mur3 SINE Alu -21 128 4 8 1419 224 362 25 41 chr11 109354943 109354982 -12488874 - B4 SINE B4 -207 85 49 8 1419 1355 75 25 46 chr11 109355339 109355373 -12488483 - B2_Mm2 SINE B2 -3 192 162 8 1419 234 0 0 0 chr11 109355373 109355399 -12488457 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 8 1419 1355 75 25 46 chr11 109355399 109355560 -12488296 - B2_Mm2 SINE B2 -34 161 1 8 1419 963 192 115 10 chr11 109355609 109355809 -12488047 + URR1A DNA MER1_type 5 225 -1 8 1419 566 248 54 8 chr11 109355821 109355951 -12487905 - RSINE1 SINE B4 -29 136 1 8 1419 401 277 0 65 chr11 109356062 109356170 -12487686 - B4 SINE B4 -190 102 2 8 1419 260 83 48 32 chr11 109356625 109356687 -12487169 + CT-rich Low_complexity Low_complexity 5 67 0 8 1419 1028 259 118 28 chr11 109357588 109357936 -12485920 - MTEa LTR MaLR 0 419 1 8 1419 533 258 19 16 chr11 109359929 109360056 -12483800 - B1F SINE Alu -8 141 2 8 1419 222 128 0 0 chr11 109360169 109360208 -12483648 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1419 313 289 38 23 chr11 109360640 109360771 -12483085 - L1MA4 LINE L1 -385 5915 5783 8 1419 675 217 0 0 chr11 109360776 109360928 -12482928 + (TA)n Simple_repeat Simple_repeat 1 152 0 8 1419 317 70 23 0 chr11 109360928 109360971 -12482885 - HAL1-3A_ME LINE L1 -846 2012 1969 9 1419 580 153 10 48 chr11 109361034 109361137 -12482719 - U6 snRNA snRNA -7 100 2 9 1419 813 218 43 68 chr11 109361138 109361345 -12482511 - ID_B1 SINE B4 -21 203 2 9 1419 284 296 68 82 chr11 109361345 109361471 -12482385 + B4 SINE B4 75 198 -94 9 1419 571 124 41 10 chr11 109361375 109361473 -12482383 + B1_Mur3 SINE Alu 11 111 -38 9 1419 418 303 165 60 chr11 109361641 109361957 -12481899 - MLT1C LTR MaLR -79 388 40 9 1419 271 319 0 14 chr11 109361988 109362061 -12481795 - B4 SINE B4 -4 288 217 9 1419 900 129 14 7 chr11 109362108 109362249 -12481607 + B1_Mur4 SINE Alu 9 150 0 9 1419 206 191 0 31 chr11 109362249 109362287 -12481569 + A-rich Low_complexity Low_complexity 1 37 0 9 1419 1225 42 14 0 chr11 109362287 109362431 -12481425 + B1_Mus1 SINE Alu 3 148 0 9 1419 206 191 0 31 chr11 109362431 109362489 -12481367 + A-rich Low_complexity Low_complexity 38 94 0 9 1419 195 42 0 0 chr11 109362610 109362634 -12481222 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 9 1419 630 232 127 34 chr11 109362714 109362919 -12480937 - B4A SINE B4 -68 224 1 9 1419 219 359 32 32 chr11 109363168 109363263 -12480593 + RSINE1 SINE B4 1 95 -70 9 1419 473 129 9 162 chr11 109363279 109363390 -12480466 + B1_Mus1 SINE Alu 12 105 -43 9 1419 506 153 16 53 chr11 109363390 109363577 -12480279 + GA-rich Low_complexity Low_complexity 1 180 0 9 1419 753 167 38 0 chr11 109363678 109363810 -12480046 + B1_Mur4 SINE Alu 5 141 -9 9 1419 525 253 167 54 chr11 109364015 109364291 -12479565 - RLTR18B LTR ERVK -28 588 282 9 1419 659 272 44 11 chr11 109364311 109364493 -12479363 - RLTR18B LTR ERVK -316 196 9 9 1419 838 221 172 60 chr11 109364833 109365013 -12478843 + MTD LTR MaLR 94 292 -127 9 1419 1395 83 5 15 chr11 109365013 109365208 -12478648 - B2_Mm1a SINE B2 0 193 1 9 1419 838 221 172 60 chr11 109365208 109365277 -12478579 + MTD LTR MaLR 293 371 -48 9 1419 273 229 30 59 chr11 109365359 109365489 -12478367 - PB1D10 SINE Alu -2 146 18 9 1419 240 316 70 65 chr11 109365364 109365550 -12478306 - ID_B1 SINE B4 0 224 38 9 1419 247 300 0 151 chr11 109366696 109366802 -12477054 + B4 SINE B4 56 145 -147 9 1419 529 215 58 0 chr11 109366830 109366951 -12476905 + B1F1 SINE Alu 10 137 -12 9 1419 267 31 0 0 chr11 109367173 109367205 -12476651 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1419 922 307 148 19 chr11 109367360 109367725 -12476131 - MLT1H1 LTR MaLR -140 415 4 9 1419 394 290 123 53 chr11 109367833 109368077 -12475779 - ORR1D2 LTR MaLR -8 362 102 9 1419 710 169 0 16 chr11 109368097 109368223 -12475633 - URR1B DNA MER1_type -1 224 101 9 1419 241 139 0 0 chr11 109368247 109368283 -12475573 - ORR1D2 LTR MaLR -323 36 1 9 1419 2583 214 50 101 chr11 109368817 109369821 -12474035 + RMER17B LTR ERVK 5 899 -9 9 1419 572 218 287 6 chr11 109369834 109369991 -12473865 - B3 SINE B2 -13 203 3 9 1419 1220 115 16 21 chr11 109370080 109370266 -12473590 + B2_Mm2 SINE B2 1 185 -10 9 1419 468 248 15 14 chr11 109370279 109370397 -12473459 + RSINE1 SINE B4 2 116 -176 9 1419 180 0 0 0 chr11 109370409 109370429 -12473427 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 9 1419 561 295 155 53 chr11 109370722 109370987 -12472869 - B4A SINE B4 0 292 1 9 1419 887 277 9 37 chr11 109371428 109371642 -12472214 + B3 SINE B2 2 209 -7 9 1419 1283 103 11 16 chr11 109371669 109371857 -12471999 + B2_Mm1t SINE B2 3 189 -4 9 1419 250 211 0 0 chr11 109372163 109372215 -12471641 - L1MC5 LINE L1 -597 7364 7313 9 1419 195 42 0 0 chr11 109372563 109372587 -12471269 + (TC)n Simple_repeat Simple_repeat 2 25 0 9 1419 1213 221 194 66 chr11 109372612 109373112 -12470744 - RMER4B LTR ERVK -9 576 13 9 1419 200 35 35 0 chr11 109373115 109373144 -12470712 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1419 228 273 15 15 chr11 109373198 109373265 -12470591 - B4 SINE B4 -222 70 4 9 1419 227 266 42 11 chr11 109373302 109373397 -12470459 - L1MC5 LINE L1 -1190 6805 6708 9 1419 52 17 0 0 chr11 109373440 109373499 -12470357 + AT_rich Low_complexity Low_complexity 1 59 0 9 1419 786 128 7 63 chr11 109373507 109373649 -12470207 - B1_Mur3 SINE Alu -14 135 2 9 1419 416 177 37 25 chr11 109373717 109373798 -12470058 - ID4_ SINE ID 0 83 2 9 1419 1113 246 119 3 chr11 109374380 109374665 -12469191 - MTEa LTR MaLR -47 332 15 9 1419 812 170 33 26 chr11 109375056 109375207 -12468649 - B3 SINE B2 0 216 65 9 1419 520 277 10 0 chr11 109375324 109375425 -12468431 - RSINE1 SINE B4 -34 131 30 9 1419 1231 304 105 41 chr11 109375511 109376026 -12467830 + MER82 DNA MER2_type 1 548 -105 9 1419 466 285 116 58 chr11 109376161 109376299 -12467557 - RSINE1 SINE B4 -17 148 3 9 1419 198 80 60 0 chr11 109376306 109376356 -12467500 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 9 1419 1271 47 0 0 chr11 109376358 109376506 -12467350 - B1_Mus1 SINE Alu 0 148 1 9 1419 518 294 8 38 chr11 109376512 109376643 -12467213 - B4A SINE B4 -68 224 98 9 1419 237 178 0 88 chr11 109376643 109376711 -12467145 + (TTGTG)n Simple_repeat Simple_repeat 1 62 0 9 1419 331 276 133 0 chr11 109376712 109376810 -12467046 - B4A SINE B4 -180 112 2 9 1419 1263 94 0 0 chr11 109377180 109377360 -12466496 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1419 653 138 0 17 chr11 109377360 109377386 -12466470 + polypyrimidine Low_complexity Low_complexity 93 117 0 9 1419 1381 29 11 0 chr11 109377386 109377560 -12466296 + (TTC)n Simple_repeat Simple_repeat 3 178 0 9 1419 653 138 0 17 chr11 109377560 109377651 -12466205 + polypyrimidine Low_complexity Low_complexity 2 92 0 9 1419 561 258 48 125 chr11 109378030 109378238 -12465618 - B3A SINE B2 0 198 7 9 1419 339 113 0 0 chr11 109379497 109379550 -12464306 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 9 1419 755 214 191 6 chr11 109379551 109379734 -12464122 - ID_B1 SINE B4 -5 219 3 9 1419 413 215 43 11 chr11 109379734 109379828 -12464028 - PB1D10 SINE Alu 0 117 21 9 1419 567 158 32 0 chr11 109380349 109380444 -12463412 + MTC LTR MaLR 1 98 -323 9 1419 207 0 0 0 chr11 109380465 109380488 -12463368 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 9 1419 1298 49 35 98 chr11 109380489 109380649 -12463207 - B2_Mm2 SINE B2 -5 190 42 9 1419 369 0 0 0 chr11 109380649 109380690 -12463166 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1419 1090 66 0 29 chr11 109380690 109380830 -12463026 - B1_Mus2 SINE Alu -10 137 2 9 1419 1298 49 35 98 chr11 109380830 109380871 -12462985 - B2_Mm2 SINE B2 -154 41 2 9 1419 2125 135 3 3 chr11 109380871 109381178 -12462678 + MTC LTR MaLR 107 413 -8 9 1419 262 326 54 14 chr11 109381688 109381803 -12462053 - PB1 SINE Alu -5 144 25 9 1419 559 184 75 28 chr11 109381832 109381938 -12461918 - B1_Mur1 SINE Alu -2 147 37 9 1419 449 250 53 9 chr11 109382006 109382119 -12461737 + PB1D7 SINE Alu 1 118 -2 9 1419 2246 80 157 14 chr11 109383263 109383608 -12460248 - ORR1B1 LTR MaLR 0 394 1 9 1419 279 0 0 0 chr11 109384244 109384275 -12459581 + (CAA)n Simple_repeat Simple_repeat 2 32 0 9 1419 418 301 48 8 chr11 109384781 109384905 -12458951 + MER58A DNA MER1_type 1 129 -95 9 1419 1343 288 78 18 chr11 109385096 109385478 -12458378 - MTD LTR MaLR -14 405 1 9 1419 531 272 52 0 chr11 109386165 109386301 -12457555 - RSINE1 SINE B4 -21 144 2 9 1419 279 151 22 34 chr11 109387144 109387233 -12456623 + (CAGAGA)n Simple_repeat Simple_repeat 6 93 0 9 1419 643 256 72 52 chr11 109387972 109388166 -12455690 - B3A SINE B2 0 198 1 9 1419 697 286 93 54 chr11 109389533 109389809 -12454047 - MLT1D LTR MaLR 0 505 214 9 1419 366 324 47 13 chr11 109390026 109390176 -12453680 - MLT1D LTR MaLR -350 155 1 9 1419 888 234 70 0 chr11 109390216 109390417 -12453439 + B3 SINE B2 2 216 0 9 1419 307 325 32 40 chr11 109390432 109390557 -12453299 - MER102c DNA MER1_type -100 231 108 9 1419 567 158 175 18 chr11 109390603 109390781 -12453075 + B3 SINE B2 2 191 -4 9 1419 644 250 35 7 chr11 109390799 109390940 -12452916 + RSINE1 SINE B4 12 156 -9 9 1419 2840 106 37 5 chr11 109391876 109392283 -12451573 + MTC LTR MaLR 2 421 0 9 1419 316 296 11 54 chr11 109392697 109392790 -12451066 + PB1D10 SINE Alu 5 93 -24 9 1419 296 242 130 11 chr11 109392817 109392909 -12450947 - Charlie12 DNA MER1_type -2764 109 7 9 1419 323 217 107 12 chr11 109392830 109392914 -12450942 + RMER30 DNA MER1_type 109 200 -2 9 1419 430 275 14 28 chr11 109392914 109393017 -12450839 + MLT1A LTR MaLR 54 154 -220 9 1419 266 289 66 11 chr11 109393085 109393176 -12450680 + MLT1A LTR MaLR 295 390 0 9 1419 25 0 0 0 chr11 109393245 109393270 -12450586 + AT_rich Low_complexity Low_complexity 1 25 0 9 1419 557 272 88 50 chr11 109393475 109393817 -12450039 - RCHARR1 DNA MER1_type -39 935 474 9 1419 263 214 188 12 chr11 109393813 109393898 -12449958 - B3 SINE B2 0 216 117 9 1419 522 274 37 7 chr11 109393995 109394131 -12449725 - B1F SINE Alu -2 147 8 9 1419 1940 252 24 24 chr11 109394254 109394754 -12449102 - RLTR16 LTR ERVK 0 505 6 9 1419 310 306 64 22 chr11 109394834 109394984 -12448872 + MIRb SINE MIR 16 171 -37 9 1419 315 345 26 66 chr11 109395839 109395991 -12447865 + B1_Mm SINE Alu 1 146 -1 9 1419 342 0 0 0 chr11 109395995 109396033 -12447823 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1419 737 193 14 7 chr11 109397033 109397174 -12446682 - B1_Mur1 SINE Alu -2 147 6 9 1419 441 296 13 38 chr11 109397174 109397191 -12446665 - ID_B1 SINE B4 -1 223 70 9 1419 189 74 0 0 chr11 109397975 109398002 -12445854 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1419 216 282 139 14 chr11 109398004 109398076 -12445780 + ID4 SINE ID 1 81 -2 9 1419 894 200 74 35 chr11 109398179 109398381 -12445475 + ID_B1 SINE B4 15 224 0 9 1419 213 243 60 157 chr11 109398455 109398538 -12445318 - L2c LINE L2 -19 3368 3294 9 1419 269 344 24 65 chr11 109398557 109398725 -12445131 - MER5A1 DNA MER1_type -5 161 1 9 1419 607 261 14 7 chr11 109398782 109398925 -12444931 + B1F SINE Alu 5 148 -1 1 1419 614 202 6 0 chr11 109399025 109399188 -12444668 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 1419 839 156 0 22 chr11 109399204 109399388 -12444468 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1419 263 192 13 0 chr11 109399449 109399527 -12444329 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1419 289 291 35 11 chr11 109399528 109399615 -12444241 - PB1D10 SINE Alu -24 93 5 1 1419 453 244 0 0 chr11 109401001 109401177 -12442679 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 1419 383 340 87 29 chr11 109402233 109402439 -12441417 - MIRb SINE MIR -45 223 6 1 1419 306 87 0 0 chr11 109402591 109402637 -12441219 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1419 315 0 0 0 chr11 109402637 109402671 -12441185 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1419 682 247 13 7 chr11 109402673 109402824 -12441032 - RSINE1 SINE B4 -12 153 2 1 1419 342 307 0 0 chr11 109402884 109402959 -12440897 - RSINE1 SINE B4 -88 77 3 1 1419 3385 68 6 13 chr11 109403573 109404048 -12439808 + Lx2 LINE L1 6172 6643 -354 1 1419 1461 100 4 31 chr11 109404048 109404275 -12439581 + Lx2 LINE L1 6775 6995 -2 1 1419 180 0 0 0 chr11 109404304 109404324 -12439532 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1419 1006 283 46 11 chr11 109404362 109404623 -12439233 + B4 SINE B4 3 272 -20 1 1419 677 250 7 7 chr11 109405405 109405550 -12438306 - B1F SINE Alu -2 147 3 1 1419 397 297 27 33 chr11 109406024 109406174 -12437682 + B1F SINE Alu 1 149 0 1 1419 289 272 0 69 chr11 109406187 109406274 -12437582 + ID2 SINE ID 2 82 -1 1 1419 592 294 7 0 chr11 109406353 109406496 -12437360 + RSINE1 SINE B4 3 146 -19 1 1419 279 0 0 0 chr11 109406507 109406538 -12437318 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1419 450 0 0 0 chr11 109406851 109406901 -12436955 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1419 432 181 0 0 chr11 109408554 109408637 -12435219 + CT-rich Low_complexity Low_complexity 2 84 0 1 1419 202 325 91 0 chr11 109408677 109408754 -12435102 - L2b LINE L2 0 3375 3292 1 1419 334 286 89 15 chr11 109408900 109409016 -12434840 - L1MEg LINE L1 -4136 1948 1823 1 1419 864 143 20 33 chr11 109409016 109409168 -12434688 - B1_Mur4 SINE Alu 0 150 1 1 1419 334 286 89 15 chr11 109409168 109409186 -12434670 - L1MEg LINE L1 -4262 1822 1805 1 1419 291 185 200 0 chr11 109410211 109410276 -12433580 - B4 SINE B4 0 292 215 1 1419 743 244 70 56 chr11 109410291 109410504 -12433352 - B3 SINE B2 0 216 1 1 1419 985 249 46 38 chr11 109410504 109410714 -12433142 - B4A SINE B4 -79 213 2 1 1419 355 250 232 43 chr11 109411884 109412022 -12431834 + RSINE1 SINE B4 2 165 0 1 1419 1189 35 21 0 chr11 109412327 109412471 -12431385 - B1_Mus1 SINE Alu -1 147 1 1 1419 489 266 152 45 chr11 109412574 109412751 -12431105 - MER20 DNA MER1_type 0 219 24 1 1419 2141 132 0 66 chr11 109413845 109414194 -12429662 - ORR1A3 LTR MaLR 0 326 1 1 1419 367 323 10 20 chr11 109414472 109414573 -12429283 + PB1 SINE Alu 28 127 0 1 1419 570 196 62 9 chr11 109414892 109415005 -12428851 + ID_B1 SINE B4 1 119 -105 1 1419 413 252 105 26 chr11 109415063 109415177 -12428679 + B4A SINE B4 1 123 -169 1 1419 546 16 0 0 chr11 109415186 109415249 -12428607 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1419 300 27 0 0 chr11 109415373 109415410 -12428446 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1419 425 219 186 20 chr11 109415445 109415547 -12428309 - B3A SINE B2 -77 121 1 1 1419 297 0 0 0 chr11 109416295 109416328 -12427528 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1419 674 53 11 0 chr11 109416328 109416422 -12427434 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 1419 589 326 36 58 chr11 109416422 109416699 -12427157 + B4A SINE B4 14 284 -8 1 1419 203 0 37 0 chr11 109417402 109417429 -12426427 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1419 247 232 80 86 chr11 109417430 109417581 -12426275 - RMER17C LTR ERVK -248 162 13 1 1419 254 311 67 0 chr11 109418051 109418141 -12425715 + PB1D10 SINE Alu 16 111 -6 1 1419 581 250 129 57 chr11 109418201 109418464 -12425392 + B4 SINE B4 2 283 -9 1 1419 41 0 0 0 chr11 109418523 109418564 -12425292 + AT_rich Low_complexity Low_complexity 1 41 0 1 1419 312 170 258 62 chr11 109418942 109419102 -12424754 - MIR SINE MIR -62 206 18 1 1419 272 27 27 0 chr11 109419844 109419881 -12423975 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1 1419 351 261 119 23 chr11 109419991 109420100 -12423756 - PB1D10 SINE Alu -2 115 1 1 1419 196 325 37 24 chr11 109420856 109420938 -12422918 - L2a LINE L2 -44 3382 3300 1 1419 705 237 83 29 chr11 109421323 109421527 -12422329 - B3 SINE B2 0 216 2 1 1419 372 244 0 0 chr11 109423347 109423425 -12420431 + ID4 SINE ID 6 83 0 1 1419 387 0 0 0 chr11 109423493 109423536 -12420320 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1419 244 320 20 10 chr11 109423667 109423765 -12420091 + MER45R DNA Tip100 12 110 -1471 1 1419 307 201 7 29 chr11 109424036 109424174 -12419682 + (TATG)n Simple_repeat Simple_repeat 4 138 0 1 1419 235 330 8 121 chr11 109424291 109424415 -12419441 - B4A SINE B4 -148 144 35 1 1419 1459 206 156 12 chr11 109425036 109425392 -12418464 - MTD LTR MaLR -15 404 10 1 1419 432 147 0 0 chr11 109425426 109425501 -12418355 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1419 429 144 0 0 chr11 109425690 109425780 -12418076 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1419 371 371 35 57 chr11 109426082 109426365 -12417491 + L4 LINE RTE 459 735 -1294 1 1419 335 239 11 54 chr11 109426416 109426445 -12417411 - HAL1-3A_ME LINE L1 -795 2063 2036 1 1419 578 109 0 10 chr11 109426445 109426547 -12417309 + (TG)n Simple_repeat Simple_repeat 1 101 0 1 1419 335 239 11 54 chr11 109426547 109426561 -12417295 - HAL1-3A_ME LINE L1 -823 2035 2024 1 1419 1092 133 0 0 chr11 109426561 109426741 -12417115 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1419 335 239 11 54 chr11 109426741 109426789 -12417067 - HAL1-3A_ME LINE L1 -835 2023 1976 1 1419 984 156 0 0 chr11 109426789 109426969 -12416887 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1419 771 173 0 0 chr11 109426981 109427154 -12416702 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 1419 302 312 123 82 chr11 109427157 109427328 -12416528 - B4A SINE B4 0 292 115 1 1419 2352 121 66 3 chr11 109427353 109427719 -12416137 + ORR1B1 LTR MaLR 1 389 -5 1 1419 809 167 30 96 chr11 109427719 109427918 -12415938 + B2_Mm2 SINE B2 1 186 -9 1 1419 307 247 0 7 chr11 109427941 109428020 -12415836 - B4A SINE B4 -197 95 20 1 1419 687 236 20 26 chr11 109428075 109428227 -12415629 + RSINE1 SINE B4 13 163 -2 1 1419 204 304 0 0 chr11 109428232 109428278 -12415578 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1419 279 243 13 51 chr11 109428381 109428459 -12415397 + ORR1D2 LTR MaLR 22 96 -274 1 1419 261 333 60 0 chr11 109428644 109428761 -12415095 + ORR1D2 LTR MaLR 242 365 -14 1 1419 229 271 28 14 chr11 109428778 109428849 -12415007 - L1MCa LINE L1 -2292 4029 3958 1 1419 512 164 0 19 chr11 109428912 109429018 -12414838 + (CATA)n Simple_repeat Simple_repeat 2 105 0 1 1419 765 208 0 0 chr11 109429081 109429259 -12414597 + (TA)n Simple_repeat Simple_repeat 1 178 0 1 1419 241 294 132 5 chr11 109429303 109429364 -12414492 - L1MCa LINE L1 -2373 3948 3875 1 1419 1225 54 0 0 chr11 109429364 109429511 -12414345 - B1_Mus1 SINE Alu 0 148 2 1 1419 241 294 132 5 chr11 109429511 109429668 -12414188 - L1MCa LINE L1 -2447 3874 3702 1 1419 1430 85 5 0 chr11 109429727 109429916 -12413940 - B2_Mm2 SINE B2 -4 191 2 1 1419 330 278 63 11 chr11 109429947 109430107 -12413749 - L1M4 LINE L1 -1086 5060 4891 1 1419 725 229 26 98 chr11 109430141 109430335 -12413521 - B3A SINE B2 -18 180 1 1 1419 287 302 42 8 chr11 109430340 109430460 -12413396 - L1MCa LINE L1 -6047 461 338 1 1419 301 354 26 0 chr11 109430712 109430825 -12413031 - L1MCa LINE L1 -6392 116 1 1 1419 245 330 32 63 chr11 109431018 109431044 -12412812 - B4A SINE B4 -85 207 86 1 1419 293 276 43 36 chr11 109431044 109431144 -12412712 - B1F2 SINE Alu -20 97 1 1 1419 356 302 96 34 chr11 109431165 109431374 -12412482 - L1MEb LINE L1 -5552 518 297 1 1419 468 262 115 0 chr11 109431802 109431924 -12411932 - ID_B1 SINE B4 -3 221 86 1 1419 460 174 46 11 chr11 109431942 109432029 -12411827 - PB1D9 SINE Alu -8 112 23 1 1419 265 276 45 79 chr11 109431965 109432118 -12411738 - MT2B LTR ERVL -341 243 86 1 1419 455 276 0 0 chr11 109432446 109432544 -12411312 + PB1D10 SINE Alu 3 100 -17 1 1419 1027 172 63 15 chr11 109432807 109433013 -12410843 + B3 SINE B2 1 216 0 1 1419 252 0 0 0 chr11 109433236 109433264 -12410592 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1419 731 232 118 11 chr11 109434375 109434562 -12409294 + B3 SINE B2 2 208 -8 1 1419 228 35 0 0 chr11 109434810 109434839 -12409017 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1419 297 0 0 0 chr11 109436552 109436585 -12407271 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1419 246 319 0 27 chr11 109436692 109436766 -12407090 - tRNA-Ala-GCY_ tRNA tRNA -1 74 3 1 1419 897 207 117 39 chr11 109437519 109437725 -12406131 - ID_B1 SINE B4 0 224 3 1 1419 537 128 23 0 chr11 109438694 109438780 -12405076 + PB1D9 SINE Alu 18 105 -15 1 1419 288 0 0 0 chr11 109438783 109438815 -12405041 + (CAGG)n Simple_repeat Simple_repeat 1 32 0 1 1419 226 264 137 14 chr11 109440112 109440185 -12403671 - B4 SINE B4 -10 282 201 1 1419 426 277 9 18 chr11 109440246 109440360 -12403496 - PB1D10 SINE Alu 0 117 5 1 1419 432 82 0 0 chr11 109440610 109440671 -12403185 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1419 683 204 37 60 chr11 109440671 109440849 -12403007 - B3A SINE B2 -33 183 1 1 1419 321 26 0 0 chr11 109442099 109442137 -12401719 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1419 226 234 0 30 chr11 109442624 109442690 -12401166 + G-rich Low_complexity Low_complexity 5 68 0 1 1419 381 276 197 65 chr11 109442852 109443177 -12400679 + ORR1E LTR MaLR 7 374 0 1 1419 191 359 46 23 chr11 109443392 109443523 -12400333 - MIR SINE MIR -109 153 20 1 1419 234 0 0 0 chr11 109444975 109445001 -12398855 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 177 1209 55 7 0 chr11 109445003 109445148 -12398708 - B1_Mus2 SINE Alu -1 146 1 1 1420 264 345 162 8 chr11 109445721 109445987 -12397869 - Lx8 LINE L1 -203 7270 6964 1 1420 1524 272 90 19 chr11 109446651 109447057 -12396799 + RCHARR1 DNA MER1_type 29 469 -505 1 1420 4047 72 0 38 chr11 109447057 109447605 -12396251 + L1_Mus2 LINE L1 6039 6565 -1 1 1420 1524 272 90 19 chr11 109447605 109447674 -12396182 + RCHARR1 DNA MER1_type 470 538 -436 1 1420 744 123 97 30 chr11 109447678 109447812 -12396044 + B1_Mus1 SINE Alu 6 148 0 1 1420 976 253 209 31 chr11 109447820 109448208 -12395648 + RCHARR1 DNA MER1_type 518 974 0 1 1420 486 0 0 0 chr11 109449614 109449668 -12394188 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1420 1236 175 10 5 chr11 109449728 109449935 -12393921 + B3 SINE B2 2 209 -7 1 1420 434 307 76 21 chr11 109449950 109450186 -12393670 + L1MB8 LINE L1 5490 5738 -440 1 1420 2304 284 117 29 chr11 109450277 109451190 -12392666 + Lx8 LINE L1 6189 7182 -291 1 1420 443 330 193 11 chr11 109451272 109451557 -12392299 + L1MB8 LINE L1 5727 6063 -115 1 1420 743 194 8 0 chr11 109451564 109451698 -12392158 + RSINE1 SINE B4 2 136 -29 1 1420 661 254 37 26 chr11 109451813 109451835 -12392021 - B3A SINE B2 -4 194 168 1 1420 423 56 0 0 chr11 109451835 109451889 -12391967 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1420 661 254 37 26 chr11 109451889 109452056 -12391800 - B3A SINE B2 -31 167 4 1 1420 270 185 0 0 chr11 109452063 109452117 -12391739 + L1MB8 LINE L1 6116 6169 -9 1 1420 781 104 9 9 chr11 109452223 109452339 -12391517 - B1_Mus2 SINE Alu 0 147 32 1 1420 1315 63 51 6 chr11 109452395 109452571 -12391285 - B2_Mm1t SINE B2 -8 185 2 1 1420 354 23 0 0 chr11 109452574 109452617 -12391239 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1420 558 0 0 0 chr11 109453170 109453232 -12390624 + (CATCC)n Simple_repeat Simple_repeat 5 66 0 1 1420 21 36 0 0 chr11 109453553 109453581 -12390275 + AT_rich Low_complexity Low_complexity 1 28 0 1 1420 572 266 27 27 chr11 109453602 109453749 -12390107 - RSINE1 SINE B4 -16 149 3 1 1420 234 243 42 14 chr11 109454003 109454074 -12389782 + ID4_ SINE ID 2 74 -9 1 1420 192 77 0 0 chr11 109454129 109454155 -12389701 + (GTGTG)n Simple_repeat Simple_repeat 5 30 0 1 1420 446 266 43 0 chr11 109454156 109454250 -12389606 + PB1D10 SINE Alu 14 111 -6 1 1420 1361 74 11 0 chr11 109454259 109454435 -12389421 + B2_Mm1t SINE B2 2 179 -14 1 1420 461 149 0 3 chr11 109454445 109454528 -12389328 + B2_Mm2 SINE B2 29 109 -107 1 1420 198 0 0 0 chr11 109454542 109454564 -12389292 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1 1420 185 65 32 0 chr11 109454582 109454613 -12389243 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1420 222 183 0 66 chr11 109454769 109454845 -12389011 + (TCTG)n Simple_repeat Simple_repeat 1 71 0 1 1420 777 188 8 8 chr11 109455609 109455743 -12388113 - B1F1 SINE Alu -12 137 4 1 1420 528 180 48 9 chr11 109455800 109455919 -12387937 + PB1D10 SINE Alu 23 148 -1 1 1420 222 284 22 90 chr11 109456756 109456845 -12387011 - ID4_ SINE ID 0 83 1 1 1420 643 241 147 16 chr11 109456895 109457085 -12386771 - B3 SINE B2 -1 215 1 1 1420 277 135 0 55 chr11 109457551 109457606 -12386250 - B3 SINE B2 -5 211 160 1 1420 544 223 91 0 chr11 109457612 109457733 -12386123 - B3 SINE B2 -17 199 68 1 1420 705 119 0 43 chr11 109458737 109458877 -12384979 + CT-rich Low_complexity Low_complexity 3 136 0 1 1420 238 286 0 0 chr11 109459530 109459593 -12384263 - ID4_ SINE ID -19 64 2 1 1420 314 171 73 73 chr11 109459772 109459854 -12384002 + MT2B LTR ERVL 197 278 -323 1 1420 723 55 0 0 chr11 109459782 109459873 -12383983 + B1_Mus2 SINE Alu 49 139 -8 1 1420 295 245 39 96 chr11 109459873 109459886 -12383970 + RLTR25B LTR ERVK 451 548 -480 1 1420 564 265 11 85 chr11 109459922 109460099 -12383757 + RSINE1 SINE B4 2 165 0 1 1420 855 239 34 24 chr11 109460166 109460372 -12383484 + B3 SINE B2 1 208 -8 1 1420 898 268 10 5 chr11 109460849 109461044 -12382812 - ID_B1 SINE B4 -27 197 2 1 1420 936 209 42 19 chr11 109461801 109462016 -12381840 - ID_B1 SINE B4 -3 221 2 1 1420 239 363 0 26 chr11 109462033 109462149 -12381707 - PB1D10 SINE Alu 0 117 5 1 1420 2229 77 45 63 chr11 109462280 109462612 -12381244 + ORR1A3 LTR MaLR 1 326 0 1 1420 912 166 0 0 chr11 109462819 109462964 -12380892 + URR1A DNA MER1_type 81 225 -1 1 1420 247 291 0 0 chr11 109463319 109463374 -12380482 + polypurine Low_complexity Low_complexity 2 56 0 1 1420 188 268 0 51 chr11 109463532 109463591 -12380265 - L2b LINE L2 -68 3307 3252 1 1420 275 231 0 0 chr11 109463740 109463792 -12380064 + tRNA-Ala-GCY_ tRNA tRNA 3 54 -21 1 1420 495 0 0 0 chr11 109464265 109464320 -12379536 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 1 1420 447 226 116 192 chr11 109464322 109464546 -12379310 - ID_B1 SINE B4 -13 211 5 1 1420 492 248 161 0 chr11 109464586 109464723 -12379133 - RSINE1 SINE B4 -4 161 3 1 1420 1158 75 0 20 chr11 109464738 109464888 -12378968 - B1_Mus2 SINE Alu 0 147 1 1 1420 261 0 0 0 chr11 109465459 109465488 -12378368 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1420 568 325 44 6 chr11 109465492 109465650 -12378206 - RSINE1 SINE B4 0 165 2 1 1420 424 290 0 18 chr11 109465655 109465764 -12378092 - PB1D10 SINE Alu -8 109 3 1 1420 437 287 62 67 chr11 109465993 109466217 -12377639 + B4 SINE B4 10 232 -60 1 1420 1274 34 0 0 chr11 109466295 109466442 -12377414 + B1_Mus2 SINE Alu 1 147 0 1 1420 269 167 135 27 chr11 109466993 109467067 -12376789 + ID4_ SINE ID 2 83 0 1 1420 492 18 0 0 chr11 109467137 109467194 -12376662 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1420 183 80 0 0 chr11 109467675 109467700 -12376156 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1420 435 311 138 32 chr11 109467732 109467921 -12375935 - B4 SINE B4 -83 209 1 1 1420 1674 236 28 23 chr11 109467989 109468387 -12375469 + MTD LTR MaLR 20 419 0 1 1420 300 294 35 0 chr11 109468431 109468516 -12375340 + PB1D10 SINE Alu 24 111 -6 1 1420 187 328 31 0 chr11 109468679 109468743 -12375113 - MIR3 SINE MIR -6 202 137 1 1420 300 268 0 0 chr11 109469037 109469093 -12374763 + L1MEg LINE L1 1883 1938 -4146 1 1420 305 185 0 97 chr11 109469136 109469208 -12374648 - ID_B1 SINE B4 0 224 160 1 1420 273 81 0 0 chr11 109469377 109469414 -12374442 + B1F2 SINE Alu 22 58 -91 1 1420 246 319 0 21 chr11 109469425 109469518 -12374338 + G-rich Low_complexity Low_complexity 6 96 0 1 1420 265 188 13 80 chr11 109469521 109469596 -12374260 + PB1D9 SINE Alu 42 111 -38 1 1420 221 114 45 0 chr11 109469596 109469640 -12374216 + (CAAAC)n Simple_repeat Simple_repeat 5 50 0 1 1420 351 302 142 37 chr11 109469667 109469801 -12374055 + RSINE1 SINE B4 3 150 -15 1 1420 242 25 0 91 chr11 109469803 109469847 -12374009 + (C)n Simple_repeat Simple_repeat 1 40 0 1 1420 538 311 29 18 chr11 109471082 109471132 -12372724 + ID SINE ID 33 84 -140 1 1420 250 331 68 48 chr11 109471132 109471278 -12372578 + B1F1 SINE Alu 1 149 0 1 1420 352 225 156 11 chr11 109473870 109473960 -12369896 - B3A SINE B2 -95 103 1 1 1420 274 304 25 57 chr11 109474061 109474183 -12369673 - PB1D7 SINE Alu -1 119 2 1 1420 421 353 0 25 chr11 109474960 109475117 -12368739 + RSINE1 SINE B4 1 153 -12 1 1420 550 227 75 34 chr11 109475373 109475519 -12368337 + B3A SINE B2 31 182 -16 1 1420 252 0 0 0 chr11 109475586 109475614 -12368242 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1420 1021 87 45 32 chr11 109475616 109475770 -12368086 - B2_Mm2 SINE B2 -39 156 1 1 1420 234 208 52 0 chr11 109475903 109475980 -12367876 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1420 836 248 226 22 chr11 109477127 109477441 -12366415 + MTD LTR MaLR 42 419 0 1 1420 554 285 0 8 chr11 109477446 109477570 -12366286 - ID_B1 SINE B4 -7 217 95 1 1420 344 119 54 42 chr11 109478502 109478668 -12365188 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1420 234 62 0 0 chr11 109478720 109478752 -12365104 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1420 508 270 35 49 chr11 109478780 109478924 -12364932 - RSINE1 SINE B4 -22 143 2 1 1420 1063 249 54 71 chr11 109479203 109479497 -12364359 + B4 SINE B4 2 290 -2 1 1420 388 275 0 42 chr11 109479561 109479656 -12364200 + ID_B1 SINE B4 82 172 -52 1 1420 451 317 27 14 chr11 109479666 109479813 -12364043 + ID_B1 SINE B4 3 151 -73 1 1420 847 282 33 5 chr11 109480064 109480278 -12363578 + ID_B1 SINE B4 1 220 -4 1 1420 1013 47 86 0 chr11 109480386 109480514 -12363342 + B1_Mm SINE Alu 1 139 -8 1 1420 486 0 0 0 chr11 109480514 109480568 -12363288 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1420 1407 104 16 0 chr11 109480698 109480890 -12362966 - B2_Mm2 SINE B2 0 195 1 1 1420 218 261 139 78 chr11 109481015 109481144 -12362712 - L2a LINE L2 -21 3405 3269 1 1420 30 59 0 0 chr11 109481418 109481469 -12362387 + AT_rich Low_complexity Low_complexity 1 51 0 1 1420 879 223 54 15 chr11 109481471 109481676 -12362180 - ID_B1 SINE B4 -10 214 2 1 1420 299 356 75 32 chr11 109481924 109482110 -12361746 + MER90a LTR ERV1 353 546 -68 1 1420 366 191 0 56 chr11 109482948 109483020 -12360836 + ID4_ SINE ID 2 69 -14 1 1420 478 241 63 63 chr11 109483066 109483208 -12360648 + RSINE1 SINE B4 3 144 -21 1 1420 326 235 56 84 chr11 109483233 109483340 -12360516 - L1MB5 LINE L1 -151 6023 5920 1 1420 858 266 0 15 chr11 109483360 109483566 -12360290 - B3 SINE B2 -11 205 3 1 1420 676 264 72 102 chr11 109483569 109483805 -12360051 - B4A SINE B4 -63 229 1 1 1420 359 323 98 15 chr11 109485267 109485399 -12358457 + RSINE1 SINE B4 1 143 -22 1 1420 378 57 0 0 chr11 109485400 109485453 -12358403 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1420 192 77 0 0 chr11 109485547 109485573 -12358283 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1420 432 360 117 20 chr11 109485576 109485823 -12358033 - B4A SINE B4 -20 272 2 1 1420 893 126 45 139 chr11 109485836 109486038 -12357818 + ORR1C2 LTR MaLR 1 183 -191 1 1420 388 63 48 0 chr11 109486039 109486102 -12357754 + (TCCC)n Simple_repeat Simple_repeat 2 67 0 1 1420 1094 160 80 22 chr11 109486103 109486323 -12357533 + ORR1C2 LTR MaLR 150 384 0 1 1420 609 288 25 56 chr11 109486370 109486532 -12357324 - RSINE1 SINE B4 0 165 9 1 1420 438 296 185 0 chr11 109486630 109486846 -12357010 - Charlie1b DNA MER1_type -27 496 241 1 1420 228 86 0 0 chr11 109486852 109486887 -12356969 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1420 1092 89 0 0 chr11 109486887 109487066 -12356790 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1420 364 301 36 50 chr11 109487069 109487209 -12356647 - RSINE1 SINE B4 -12 153 16 1 1420 238 235 0 29 chr11 109487209 109487279 -12356577 - Charlie1b DNA MER1_type -271 252 185 1 1420 2498 135 37 0 chr11 109487725 109488103 -12355753 + ORR1B1 LTR MaLR 1 392 -2 1 1420 4258 154 63 22 chr11 109488135 109488907 -12354949 - RMER13B LTR ERVK 0 908 105 1 1420 780 250 15 75 chr11 109488924 109488975 -12354881 + B3 SINE B2 2 42 -174 1 1420 477 0 0 0 chr11 109488975 109489028 -12354828 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1420 780 250 15 75 chr11 109489028 109489175 -12354681 + B3 SINE B2 43 188 -28 1 1420 681 264 114 43 chr11 109489291 109489527 -12354329 + MTD LTR MaLR 1 226 -193 1 1420 350 281 0 11 chr11 109490075 109490165 -12353691 - B4 SINE B4 -203 89 1 1 1420 1027 220 9 57 chr11 109490969 109491196 -12352660 - B3 SINE B2 0 216 1 1 1420 312 281 96 9 chr11 109491320 109491435 -12352421 + PB1 SINE Alu 1 125 -2 1 1420 309 236 54 16 chr11 109491436 109491561 -12352295 + ID4_ SINE ID 13 146 -6 1 1420 704 197 39 23 chr11 109491675 109491805 -12352051 + B1_Mur2 SINE Alu 1 132 -17 1 1420 1262 27 7 0 chr11 109492343 109492489 -12351367 - B1_Mus2 SINE Alu 0 147 1 1 1420 838 219 45 30 chr11 109492570 109492772 -12351084 + B3 SINE B2 8 212 -4 1 1420 859 235 5 11 chr11 109492864 109493053 -12350803 + B3A SINE B2 3 190 -8 1 1420 23 0 0 0 chr11 109493185 109493208 -12350648 + AT_rich Low_complexity Low_complexity 1 23 0 1 1420 654 315 41 71 chr11 109493355 109493721 -12350135 - ORR1E LTR MaLR -2 357 3 1 1420 514 236 27 0 chr11 109493946 109494056 -12349800 + PB1D10 SINE Alu 5 117 0 1 1420 345 266 15 20 chr11 109494194 109494334 -12349522 - ORR1E LTR MaLR -2 377 249 1 1420 733 95 17 0 chr11 109494341 109494457 -12349399 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 1 1420 420 95 48 0 chr11 109494472 109494535 -12349321 - PB1D9 SINE Alu -49 71 6 1 1420 383 212 23 12 chr11 109494535 109494550 -12349306 - ID_B1 SINE B4 -65 133 73 1 1420 381 318 106 55 chr11 109494572 109494828 -12349028 - L1MC LINE L1 -1043 5103 4835 1 1420 564 315 128 16 chr11 109494852 109495110 -12348746 - B4A SINE B4 -4 288 2 1 1420 227 318 80 0 chr11 109495121 109495209 -12348647 - L1M3 LINE L1 -1278 4868 4774 1 1420 1245 192 5 18 chr11 109495441 109495659 -12348197 - B3 SINE B2 -1 215 1 1 1420 303 276 174 17 chr11 109495673 109496025 -12347831 - L1M3 LINE L1 -1745 4401 3984 1 1420 321 135 0 0 chr11 109496720 109496772 -12347084 + (CGTG)n Simple_repeat Simple_repeat 1 52 0 1 1420 1209 247 43 4 chr11 109496791 109497067 -12346789 - B4A SINE B4 -1 291 5 1 1420 786 137 0 8 chr11 109497139 109497257 -12346599 + B1_Mur2 SINE Alu 1 117 -32 1 1420 219 114 0 0 chr11 109497587 109497622 -12346234 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1 1420 842 286 32 18 chr11 109497817 109498038 -12345818 + B4A SINE B4 2 225 -67 1 1420 1360 95 10 21 chr11 109498040 109498234 -12345622 + B2_Mm2 SINE B2 2 193 -2 1 1420 1200 62 0 14 chr11 109498234 109498381 -12345475 + B1_Mus1 SINE Alu 1 146 -2 1 1420 492 18 0 0 chr11 109498466 109498523 -12345333 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1420 2197 98 6 59 chr11 109498672 109499009 -12344847 + ORR1A2 LTR MaLR 1 319 -8 1 1420 412 248 27 101 chr11 109499287 109499435 -12344421 - B1F SINE Alu -8 141 5 1 1420 438 139 0 0 chr11 109499435 109499507 -12344349 + (CAT)n Simple_repeat Simple_repeat 2 73 0 1 1420 197 193 281 0 chr11 109499509 109499566 -12344290 - L2a LINE L2 -36 3390 3318 1 1420 926 267 58 23 chr11 109499713 109499974 -12343882 + MTD LTR MaLR 1 270 -149 1 1420 298 203 15 30 chr11 109500057 109500123 -12343733 + MTD LTR MaLR 353 417 -2 1 1420 1112 167 0 0 chr11 109500123 109500300 -12343556 + URR1A DNA MER1_type 39 215 -11 2 1420 319 262 187 0 chr11 109500311 109500418 -12343438 + MLT1H1 LTR MaLR 381 507 -48 3 1420 235 349 36 9 chr11 109500959 109501069 -12342787 - MLT2C2 LTR ERVL -258 206 94 4 1420 1013 251 84 60 chr11 109501250 109501618 -12342238 - MTEb LTR MaLR 0 379 3 5 1420 450 303 142 11 chr11 109501744 109501934 -12341922 + MER58B DNA MER1_type 127 341 0 6 1420 189 0 0 0 chr11 109502136 109502157 -12341699 + (TGG)n Simple_repeat Simple_repeat 3 23 0 7 1420 557 307 27 16 chr11 109502201 109502357 -12341499 - RSINE1 SINE B4 0 165 2 8 1420 497 266 132 83 chr11 109502383 109502649 -12341207 + ORR1E LTR MaLR 79 357 -2 9 1420 374 333 70 11 chr11 109502666 109502851 -12341005 + MER3 DNA MER1_type 6 201 -8 1 1420 388 250 71 71 chr11 109502940 109503052 -12340804 - MIRb SINE MIR -116 152 41 1 1420 277 271 0 0 chr11 109503053 109503120 -12340736 + BC1_Mm scRNA scRNA 27 93 -59 1 1420 457 279 74 17 chr11 109504145 109504320 -12339536 + MER2 DNA MER2_type 3 187 -158 1 1420 297 275 12 12 chr11 109504366 109504447 -12339409 - MER47C DNA MER2_type -15 82 2 1 1420 413 50 17 0 chr11 109504876 109504936 -12338920 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1420 288 152 21 32 chr11 109504941 109505036 -12338820 + (CAGAGA)n Simple_repeat Simple_repeat 2 95 0 1 1420 2744 274 93 42 chr11 109505315 109506390 -12337466 - Lx8 LINE L1 -564 6909 5742 1 1420 423 0 0 0 chr11 109506390 109506437 -12337419 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1420 847 264 45 78 chr11 109506437 109506606 -12337250 - Lx8 LINE L1 -1719 5741 5546 1 1420 1082 72 12 12 chr11 109506606 109506774 -12337082 + (TTCTC)n Simple_repeat Simple_repeat 5 172 0 1 1420 831 265 42 73 chr11 109506774 109506898 -12336958 - Lx8 LINE L1 -2195 5590 5451 1 1420 4636 114 8 1 chr11 109506898 109507548 -12336308 + Lx2 LINE L1 6344 6997 0 2 1420 1022 264 66 101 chr11 109507716 109507762 -12336094 + MLT2D LTR ERVL 1 65 -349 2 1420 1353 131 22 18 chr11 109507762 109507987 -12335869 - URR1A DNA MER1_type 0 226 1 2 1420 1022 264 66 101 chr11 109507987 109508365 -12335491 + MLT2D LTR ERVL 66 409 -5 2 1420 285 265 88 39 chr11 109508835 109508937 -12334919 - B4A SINE B4 -42 250 144 2 1420 1271 27 0 0 chr11 109508939 109509086 -12334770 + B1_Mm SINE Alu 1 147 0 2 1420 495 265 25 56 chr11 109509120 109509280 -12334576 - B4A SINE B4 -136 156 2 2 1420 256 24 49 0 chr11 109509299 109509340 -12334516 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2 1420 469 277 54 78 chr11 109509342 109509546 -12334310 - B3 SINE B2 -13 203 5 2 1420 186 182 89 22 chr11 109510548 109510593 -12333263 - MIRc SINE MIR -115 153 106 2 1420 302 276 154 43 chr11 109510970 109511178 -12332678 - MER33 DNA MER1_type -82 242 12 2 1420 259 252 24 63 chr11 109512605 109512732 -12331124 + C-rich Low_complexity Low_complexity 2 123 0 2 1420 21 0 0 0 chr11 109512758 109512779 -12331077 + AT_rich Low_complexity Low_complexity 1 21 0 3 1420 560 215 110 0 chr11 109515998 109516162 -12327694 - B3A SINE B2 -1 192 1 3 1420 180 326 20 0 chr11 109517352 109517401 -12326455 - MIRb SINE MIR -8 260 211 3 1420 342 67 0 0 chr11 109517401 109517446 -12326410 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1420 525 32 0 0 chr11 109517446 109517508 -12326348 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 1420 276 30 0 0 chr11 109518383 109518416 -12325440 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1420 734 243 127 73 chr11 109518475 109518750 -12325106 - B4A SINE B4 -2 290 1 3 1420 200 206 0 0 chr11 109518812 109518846 -12325010 + T-rich Low_complexity Low_complexity 2 35 0 3 1420 6726 55 14 8 chr11 109518965 109519850 -12324006 + L1_Mus2 LINE L1 5681 6566 0 3 1420 234 200 0 0 chr11 109519973 109520018 -12323838 + T-rich Low_complexity Low_complexity 16 60 0 3 1420 1172 61 0 7 chr11 109520018 109520166 -12323690 - B1_Mm SINE Alu 0 147 1 4 1420 234 200 0 0 chr11 109520166 109520180 -12323676 + T-rich Low_complexity Low_complexity 2 15 0 4 1420 788 233 106 44 chr11 109520185 109520459 -12323397 - B4 SINE B4 0 292 2 4 1420 1251 27 0 0 chr11 109521835 109521981 -12321875 - B1_Mus2 SINE Alu -1 146 1 4 1420 211 220 0 20 chr11 109522704 109522755 -12321101 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1420 227 352 30 30 chr11 109523929 109524061 -12319795 + MIR SINE MIR 124 255 -7 4 1420 496 292 97 38 chr11 109524768 109524953 -12318903 + B3A SINE B2 2 197 -1 4 1420 309 89 0 0 chr11 109525092 109525137 -12318719 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1420 506 278 109 68 chr11 109525204 109525470 -12318386 - MER2 DNA MER2_type -51 294 18 4 1420 229 317 114 9 chr11 109527657 109527762 -12316094 - MER58A DNA MER1_type -83 141 26 4 1420 549 235 69 56 chr11 109528107 109528251 -12315605 - B1_Mus2 SINE Alu 0 147 2 5 1420 343 234 52 21 chr11 109528252 109528348 -12315508 - PB1D10 SINE Alu -1 116 18 5 1420 286 290 70 0 chr11 109528476 109528576 -12315280 - B1F SINE Alu -26 123 17 5 1420 30 0 0 0 chr11 109530447 109530477 -12313379 + AT_rich Low_complexity Low_complexity 1 30 0 5 1420 21 0 0 0 chr11 109531081 109531102 -12312754 + AT_rich Low_complexity Low_complexity 1 21 0 5 1420 371 349 108 21 chr11 109531926 109532251 -12311605 - MER82 DNA MER2_type 0 653 301 5 1420 261 0 0 0 chr11 109533138 109533167 -12310689 + (CAGCC)n Simple_repeat Simple_repeat 2 30 0 5 1420 286 300 133 0 chr11 109533502 109533622 -12310234 + B4A SINE B4 73 208 -84 5 1420 439 262 37 0 chr11 109533519 109533626 -12310230 + PB1D10 SINE Alu 7 117 0 5 1420 302 227 152 68 chr11 109533841 109533959 -12309897 - B1F SINE Alu 0 149 22 5 1420 351 215 137 21 chr11 109533871 109533966 -12309890 - ID_B1 SINE B4 -22 202 97 6 1420 198 0 0 0 chr11 109535049 109535071 -12308785 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1420 327 78 0 0 chr11 109535073 109535124 -12308732 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 6 1420 216 0 0 0 chr11 109535763 109535787 -12308069 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1420 682 278 52 35 chr11 109537901 109538188 -12305668 - B4A SINE B4 0 292 1 6 1420 389 393 0 0 chr11 109539298 109539415 -12304441 + ID_B1 SINE B4 85 201 -23 6 1420 599 302 7 0 chr11 109540901 109541040 -12302816 + RSINE1 SINE B4 2 141 -24 6 1420 221 163 23 0 chr11 109541056 109541099 -12302757 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1420 355 172 0 17 chr11 109541656 109541715 -12302141 + B4 SINE B4 171 228 -64 6 1420 353 153 0 14 chr11 109541815 109541888 -12301968 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1420 233 287 46 130 chr11 109542038 109542146 -12301710 + ORR1E LTR MaLR 10 108 -271 7 1420 263 241 89 57 chr11 109542236 109542359 -12301497 + ORR1E LTR MaLR 224 350 -9 7 1420 266 282 156 49 chr11 109542533 109542738 -12301118 + Kanga2_a DNA Tc2 639 865 -23 7 1420 399 21 0 0 chr11 109543200 109543248 -12300608 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1420 1984 153 112 8 chr11 109543646 109544002 -12299854 + ORR1B1 LTR MaLR 2 394 0 7 1420 295 238 19 19 chr11 109544763 109544866 -12298990 + CT-rich Low_complexity Low_complexity 1 103 0 7 1420 309 233 199 52 chr11 109544866 109545002 -12298854 - HAL1-3A_ME LINE L1 -419 2439 2284 7 1420 458 219 19 13 chr11 109545031 109545188 -12298668 + C-rich Low_complexity Low_complexity 2 159 0 7 1420 528 258 32 0 chr11 109545196 109545320 -12298536 - B1F SINE Alu -11 138 11 7 1420 372 283 124 7 chr11 109545496 109545649 -12298207 + MER5B DNA MER1_type 8 178 0 7 1420 496 252 61 30 chr11 109545687 109545818 -12298038 - MER5A1 DNA MER1_type -30 136 2 7 1420 233 300 15 29 chr11 109546277 109546351 -12297505 + MIRb SINE MIR 10 88 -188 8 1420 266 312 70 89 chr11 109546925 109547083 -12296773 - L2b LINE L2 -1 3374 3220 8 1420 265 292 62 46 chr11 109547718 109547858 -12295998 - Lx8 LINE L1 0 7473 7328 8 1420 360 0 0 0 chr11 109547858 109547898 -12295958 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1420 438 20 0 0 chr11 109547898 109547948 -12295908 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1420 265 292 62 46 chr11 109547948 109548000 -12295856 - Lx8 LINE L1 -146 7327 7278 8 1420 604 265 175 22 chr11 109548314 109548542 -12295314 - Lx8 LINE L1 -202 7271 7009 8 1420 192 111 0 0 chr11 109550044 109550080 -12293776 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1420 1046 221 41 5 chr11 109550175 109550371 -12293485 + ID_B1 SINE B4 8 210 -14 8 1420 716 311 28 28 chr11 109550419 109550667 -12293189 + B4A SINE B4 10 257 -35 8 1420 603 147 0 0 chr11 109550680 109550782 -12293074 + (GGA)n Simple_repeat Simple_repeat 2 103 0 8 1420 265 393 64 0 chr11 109550923 109551063 -12292793 - L3 LINE CR1 -191 4298 4150 8 1420 798 318 47 74 chr11 109551166 109551530 -12292326 + MLT1A0 LTR MaLR 5 358 -7 9 1420 349 275 114 8 chr11 109551931 109552063 -12291793 + MLT1E3 LTR MaLR 162 307 -320 9 1420 382 285 219 5 chr11 109552395 109552582 -12291274 + MLT1E3 LTR MaLR 390 616 -8 9 1420 21 36 0 0 chr11 109552637 109552665 -12291191 + AT_rich Low_complexity Low_complexity 1 28 0 9 1420 473 285 0 31 chr11 109552665 109552792 -12291064 + B1_Mur4 SINE Alu 28 150 0 9 1420 186 43 0 0 chr11 109552854 109552877 -12290979 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1420 602 26 13 0 chr11 109552890 109552966 -12290890 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 9 1420 234 298 0 0 chr11 109552991 109553048 -12290808 - PB1D7 SINE Alu -60 60 4 9 1420 231 121 60 134 chr11 109553531 109553598 -12290258 - MER102a DNA MER1_type -177 153 92 9 1420 349 216 40 0 chr11 109554768 109554842 -12289014 + MER63B DNA AcHobo 327 403 -33 9 1420 404 310 8 8 chr11 109556294 109556411 -12287445 - PB1D10 SINE Alu 0 117 1 9 1420 1232 226 16 135 chr11 109556484 109556914 -12286942 + MTE2a LTR MaLR 1 379 0 1 1420 644 271 174 23 chr11 109556917 109557227 -12286629 + MLT1A0 LTR MaLR 7 363 -2 1 1420 364 312 53 59 chr11 109557375 109557562 -12286294 - L1M5 LINE L1 -623 5501 5316 1 1420 329 309 93 9 chr11 109558047 109558155 -12285701 - PB1D10 SINE Alu 0 117 1 1 1420 655 315 77 22 chr11 109558914 109559187 -12284669 + B4A SINE B4 1 288 -4 1 1420 186 347 32 24 chr11 109559239 109559363 -12284493 - MIRb SINE MIR -58 210 86 1 1420 676 242 67 16 chr11 109559509 109559702 -12284154 - ID_B1 SINE B4 -19 205 3 1 1420 22 0 0 0 chr11 109559711 109559733 -12284123 + AT_rich Low_complexity Low_complexity 1 22 0 1 1420 196 242 30 75 chr11 109560073 109560140 -12283716 + L3 LINE CR1 3492 3555 -934 1 1420 399 21 0 0 chr11 109560611 109560659 -12283197 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1420 1066 218 19 0 chr11 109561171 109561382 -12282474 + B3 SINE B2 2 216 0 1 1420 417 255 344 12 chr11 109561599 109561762 -12282094 - ID_B1 SINE B4 0 224 8 1 1420 287 213 0 13 chr11 109561948 109562024 -12281832 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1420 251 293 0 0 chr11 109563790 109563848 -12280008 + MER20 DNA MER1_type 4 61 -158 1 1420 309 263 41 31 chr11 109563867 109563965 -12279891 + MER20 DNA MER1_type 121 219 0 1 1420 240 243 0 0 chr11 109564336 109564410 -12279446 + (CATA)n Simple_repeat Simple_repeat 1 74 0 1 1420 213 244 0 0 chr11 109564422 109564463 -12279393 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1 1420 700 198 0 22 chr11 109564466 109564647 -12279209 + (CATA)n Simple_repeat Simple_repeat 4 180 0 1 1420 537 190 21 25 chr11 109564659 109564902 -12278954 + (CATATA)n Simple_repeat Simple_repeat 1 242 0 1 1420 222 91 0 0 chr11 109565198 109565231 -12278625 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 1 1420 207 0 0 0 chr11 109565430 109565453 -12278403 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1420 450 341 55 39 chr11 109566047 109566358 -12277498 - MLT1I LTR MaLR -4 407 92 1 1420 477 0 0 0 chr11 109566385 109566438 -12277418 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1420 647 266 151 26 chr11 109566735 109567047 -12276809 + L1MA7 LINE L1 5538 5888 -403 1 1420 1076 36 7 0 chr11 109567644 109567781 -12276075 + (GA)n Simple_repeat Simple_repeat 1 138 0 1 1420 673 146 13 0 chr11 109568364 109568515 -12275341 + CT-rich Low_complexity Low_complexity 2 154 0 1 1420 445 159 30 18 chr11 109568526 109568693 -12275163 + (TCTCTG)n Simple_repeat Simple_repeat 2 170 0 1 1420 227 184 0 0 chr11 109568693 109568742 -12275114 + (TCTG)n Simple_repeat Simple_repeat 3 51 0 1 1420 491 274 156 62 chr11 109568750 109568768 -12275088 - B4 SINE B4 -4 288 271 1 1420 555 102 0 0 chr11 109568768 109568856 -12275000 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1420 491 274 156 62 chr11 109568856 109569094 -12274762 - B4 SINE B4 -22 270 8 1 1420 584 137 10 0 chr11 109569379 109569481 -12274375 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 1 1420 191 291 134 18 chr11 109569843 109569955 -12273901 - MIRm SINE MIR -93 183 59 1 1420 605 363 121 51 chr11 109570388 109571276 -12272580 + L4 LINE RTE 552 1501 -528 1 1420 224 211 0 0 chr11 109571339 109571377 -12272479 + (CCA)n Simple_repeat Simple_repeat 3 40 0 1 1420 21 0 0 0 chr11 109571652 109571673 -12272183 + AT_rich Low_complexity Low_complexity 1 21 0 1 1420 451 323 30 137 chr11 109571813 109572208 -12271648 + MLT1D LTR MaLR 7 359 -146 1 1420 588 162 0 0 chr11 109572653 109572801 -12271055 + (TA)n Simple_repeat Simple_repeat 1 148 0 1 1420 581 320 27 11 chr11 109572814 109572997 -12270859 + MTE2b LTR MaLR 3 188 -191 1 1420 915 189 129 25 chr11 109572970 109573171 -12270685 - ORR1B2 LTR MaLR -145 222 1 1 1420 346 274 93 9 chr11 109573325 109573432 -12270424 - PB1D10 SINE Alu 0 117 2 1 1420 219 167 0 23 chr11 109574000 109574043 -12269813 + C-rich Low_complexity Low_complexity 1 42 0 1 1420 916 201 93 7 chr11 109574143 109574339 -12269517 - B3 SINE B2 -10 206 14 1 1420 269 270 101 93 chr11 109574789 109574928 -12268928 - Charlie4z DNA MER1_type -25 142 3 1 1420 423 0 0 0 chr11 109575538 109575585 -12268271 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1420 318 169 0 0 chr11 109575601 109575666 -12268190 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1420 849 268 5 39 chr11 109575676 109575882 -12267974 - B4A SINE B4 -8 284 86 1 1421 342 320 56 25 chr11 109576674 109576834 -12267022 - MER92C LTR ERV1 -33 521 357 1 1421 416 364 68 45 chr11 109577353 109577661 -12266195 - MLT1E2 LTR MaLR -34 590 272 1 1421 285 197 0 0 chr11 109577832 109577898 -12265958 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1421 294 207 17 17 chr11 109577898 109577957 -12265899 - MLT1E3 LTR MaLR -565 59 1 1 1421 183 100 0 0 chr11 109578056 109578086 -12265770 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1421 351 0 0 0 chr11 109580071 109580110 -12263746 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1421 658 279 52 52 chr11 109580579 109580791 -12263065 - ID_B1 SINE B4 -8 216 5 1 1421 180 0 0 0 chr11 109582195 109582215 -12261641 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1421 567 176 0 0 chr11 109584630 109584755 -12259101 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 1421 780 253 103 44 chr11 109584763 109585036 -12258820 - B4 SINE B4 0 292 4 1 1421 223 338 13 13 chr11 109585047 109585125 -12258731 + MIR SINE MIR 154 231 -31 1 1421 21 0 0 0 chr11 109585395 109585416 -12258440 + AT_rich Low_complexity Low_complexity 1 21 0 1 1421 851 307 80 33 chr11 109586547 109586950 -12256906 + MLT1C LTR MaLR 11 466 -1 1 1421 207 0 0 0 chr11 109587583 109587606 -12256250 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1421 853 198 64 25 chr11 109587665 109587867 -12255989 + B3 SINE B2 1 210 -6 1 1421 1398 77 22 0 chr11 109587888 109588069 -12255787 - B2_Mm2 SINE B2 -9 186 2 1 1421 450 0 0 0 chr11 109588562 109588612 -12255244 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1421 257 308 0 0 chr11 109588622 109588687 -12255169 - ID4_ SINE ID -17 66 2 1 1421 327 295 75 37 chr11 109588689 109588823 -12255033 - B1F SINE Alu 0 149 11 1 1421 254 324 48 41 chr11 109588694 109588839 -12255017 - ID_B1 SINE B4 -1 223 78 1 1421 342 281 180 41 chr11 109589016 109589282 -12254574 + B4 SINE B4 2 291 -1 1 1421 1169 152 108 0 chr11 109589362 109589585 -12254271 - Lx2 LINE L1 -1 6996 6750 1 1421 772 218 58 39 chr11 109589626 109589831 -12254025 - B3 SINE B2 -6 210 2 1 1421 234 299 25 25 chr11 109590166 109590245 -12253611 + MIR3 SINE MIR 109 187 -21 1 1421 265 351 57 14 chr11 109590348 109590502 -12253354 + MIR3 SINE MIR 12 165 -43 1 1421 670 263 63 36 chr11 109590502 109590754 -12253102 + L1MEf LINE L1 1446 1704 -4496 1 1421 328 318 39 8 chr11 109590763 109590890 -12252966 + MTC LTR MaLR 4 134 -287 1 1421 496 325 121 10 chr11 109590897 109591096 -12252760 + B4 SINE B4 72 292 0 1 1421 328 303 22 15 chr11 109591251 109591385 -12252471 + L1ME2 LINE L1 5804 5938 -226 1 1421 2942 19 5 62 chr11 109591495 109591884 -12251972 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1421 1299 248 61 72 chr11 109592017 109592408 -12251448 + MTD LTR MaLR 18 404 -15 1 1421 273 89 0 0 chr11 109592500 109592545 -12251311 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1 1421 430 293 181 51 chr11 109592861 109593024 -12250832 - MLT1A LTR MaLR 0 374 176 1 1421 366 23 0 0 chr11 109593024 109593067 -12250789 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1421 430 293 181 51 chr11 109593067 109593234 -12250622 - MLT1A LTR MaLR -199 175 2 1 1421 942 257 4 22 chr11 109593399 109593626 -12250230 + ID_B1 SINE B4 2 224 0 1 1421 537 229 0 63 chr11 109593677 109593803 -12250053 - PB1D9 SINE Alu -2 118 1 1 1421 269 286 35 63 chr11 109593805 109593947 -12249909 - L1MA6 LINE L1 -1 6299 6162 1 1421 297 75 0 0 chr11 109594439 109594479 -12249377 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 1421 406 268 22 52 chr11 109594490 109594624 -12249232 - RSINE1 SINE B4 -35 130 1 1 1421 333 267 229 0 chr11 109595039 109595144 -12248712 - B1_Mur2 SINE Alu 0 149 21 1 1421 24 0 0 0 chr11 109595170 109595194 -12248662 + AT_rich Low_complexity Low_complexity 1 24 0 1 1421 4366 108 125 1 chr11 109595897 109596553 -12247303 + RMER19A LTR ERVK 1 737 0 1 1421 255 224 78 13 chr11 109596557 109596634 -12247222 - MLT1A1 LTR MaLR -254 154 73 1 1421 37 23 0 0 chr11 109597367 109597411 -12246445 + AT_rich Low_complexity Low_complexity 1 44 0 1 1421 996 208 19 14 chr11 109597534 109597744 -12246112 - B3 SINE B2 -5 211 1 1 1421 479 301 158 39 chr11 109597895 109598268 -12245588 - MLT1D LTR MaLR -4 463 69 1 1421 333 325 19 50 chr11 109598346 109598505 -12245351 + L1ME4a LINE L1 5969 6122 -2 1 1421 863 295 10 0 chr11 109599400 109599607 -12244249 - MER58A DNA MER1_type -15 209 1 1 1421 1191 48 0 26 chr11 109600314 109600465 -12243391 - B1_Mus1 SINE Alu 0 148 2 1 1421 235 256 102 79 chr11 109601231 109601358 -12242498 - MLT1L LTR MaLR -197 413 284 1 1421 10063 21 0 0 chr11 109601358 109603163 -12240693 - L1Md_A LINE L1 -18 6564 4759 1 1421 686 278 55 66 chr11 109603231 109603520 -12240336 + B4 SINE B4 5 290 -2 1 1421 342 0 0 0 chr11 109603549 109603587 -12240269 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1421 562 173 15 0 chr11 109603601 109603734 -12240122 + GA-rich Low_complexity Low_complexity 2 136 0 1 1421 2040 196 128 22 chr11 109603886 109604396 -12239460 + RLTR12A LTR ERVK 1 564 -4 1 1421 1094 81 6 17 chr11 109604989 109605164 -12238692 + (TTC)n Simple_repeat Simple_repeat 1 173 0 2 1421 377 189 0 11 chr11 109605164 109605255 -12238601 + CT-rich Low_complexity Low_complexity 2 91 0 2 1421 364 370 45 38 chr11 109605926 109606193 -12237663 + L1MC4a LINE L1 5581 5849 -2033 2 1421 342 127 0 0 chr11 109606236 109606307 -12237549 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1421 226 185 59 47 chr11 109606318 109606403 -12237453 + RMER17C LTR ERVK 185 270 -140 2 1421 835 243 9 56 chr11 109607266 109607497 -12236359 - ID_B1 SINE B4 -3 221 2 2 1421 250 328 92 25 chr11 109607638 109607757 -12236099 + PB1 SINE Alu 1 127 0 2 1421 335 167 83 0 chr11 109607883 109607943 -12235913 + ORR1D1 LTR MaLR 25 89 -285 2 1421 247 343 0 0 chr11 109608521 109608588 -12235268 + MLT1F2 LTR MaLR 1 67 -493 2 1421 225 94 0 0 chr11 109608640 109608672 -12235184 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1421 607 292 106 90 chr11 109608692 109609067 -12234789 + MLT1F2 LTR MaLR 131 560 0 2 1421 345 47 0 0 chr11 109609356 109609399 -12234457 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1421 215 329 0 14 chr11 109609401 109609475 -12234381 - B3A SINE B2 -46 152 80 2 1421 822 247 107 44 chr11 109610076 109610347 -12233509 + B4 SINE B4 5 292 0 2 1421 206 229 21 0 chr11 109610353 109610401 -12233455 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1421 331 207 110 44 chr11 109610401 109610583 -12233273 - RMER17A LTR ERVK -345 406 213 2 1421 896 173 0 0 chr11 109610665 109610804 -12233052 + B1_Mus2 SINE Alu 4 142 -5 2 1421 770 148 0 14 chr11 109610810 109610954 -12232902 + GA-rich Low_complexity Low_complexity 3 144 0 2 1421 215 103 26 0 chr11 109610989 109611028 -12232828 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1421 712 306 97 29 chr11 109611058 109611337 -12232519 + MER2 DNA MER2_type 10 307 -38 2 1421 256 338 15 0 chr11 109611360 109611428 -12232428 - RSINE1 SINE B4 -14 151 83 2 1421 424 312 12 78 chr11 109611463 109611630 -12232226 - B4A SINE B4 -136 156 1 2 1421 360 0 0 0 chr11 109611637 109611677 -12232179 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1421 261 0 0 0 chr11 109611809 109611838 -12232018 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1421 29 78 0 0 chr11 109612068 109612132 -12231724 + AT_rich Low_complexity Low_complexity 1 64 0 2 1421 420 315 53 45 chr11 109612550 109612796 -12231060 + B4A SINE B4 45 292 0 2 1421 286 284 101 63 chr11 109613484 109613721 -12230135 + MER113A DNA MER1_type 69 314 0 2 1421 662 292 0 0 chr11 109613926 109614080 -12229776 + RSINE1 SINE B4 12 165 0 2 1421 237 108 0 0 chr11 109614089 109614126 -12229730 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1421 603 256 203 12 chr11 109614379 109614620 -12229236 - B4 SINE B4 -4 288 2 2 1421 1176 262 22 65 chr11 109614906 109615319 -12228537 + MTE2a LTR MaLR 19 419 0 2 1421 863 264 45 59 chr11 109616414 109616704 -12227152 + B4A SINE B4 1 286 -6 2 1421 192 40 0 0 chr11 109616718 109616743 -12227113 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1421 237 294 101 23 chr11 109618508 109618637 -12225219 + L1MEg LINE L1 1632 1770 -4314 2 1421 419 350 62 4 chr11 109618804 109619062 -12224794 + MLT1B LTR MaLR 1 273 -117 2 1421 1298 321 26 22 chr11 109619220 109619723 -12224133 - Lx8 LINE L1 -825 6648 6144 2 1421 506 153 59 8 chr11 109619737 109619856 -12224000 - Lx9 LINE L1 -1 7643 7519 2 1421 459 0 0 0 chr11 109619889 109619940 -12223916 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1421 198 0 0 0 chr11 109619940 109619961 -12223895 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1421 2524 170 9 0 chr11 109619971 109620395 -12223461 - Lx9 LINE L1 -466 7178 6751 2 1421 2011 113 0 6 chr11 109620403 109620723 -12223133 - ORR1A3 LTR MaLR -8 318 1 2 1421 1459 107 20 8 chr11 109620723 109620968 -12222888 - ORR1A3-int LTR MaLR 0 1963 1716 2 1421 208 323 15 0 chr11 109621682 109621747 -12222109 + GA-rich Low_complexity Low_complexity 3 68 0 2 1421 180 0 0 0 chr11 109621835 109621855 -12222001 + (CG)n Simple_repeat Simple_repeat 2 21 0 2 1421 378 0 0 0 chr11 109621855 109621896 -12221960 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1421 584 251 65 44 chr11 109622181 109622410 -12221446 - RMER5 LTR ERV1 0 534 301 2 1421 517 266 45 69 chr11 109622586 109622788 -12221068 + B3A SINE B2 2 198 0 2 1421 4462 277 35 28 chr11 109622819 109624094 -12219762 + Lx8 LINE L1 6189 7471 -2 2 1421 649 304 35 37 chr11 109624134 109624465 -12219391 - RLTR18B LTR ERVK -3 613 182 2 1421 493 303 67 100 chr11 109624483 109624824 -12219032 - RLTR18 LTR ERVK -286 330 1 2 1421 405 0 0 0 chr11 109624837 109624882 -12218974 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1421 560 293 126 11 chr11 109625101 109625291 -12218565 + B4 SINE B4 5 216 -76 2 1421 309 109 0 0 chr11 109625345 109625391 -12218465 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1421 225 0 0 0 chr11 109625554 109625579 -12218277 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1421 380 292 9 9 chr11 109626500 109626614 -12217242 + ID_B1 SINE B4 102 215 -9 2 1421 275 309 55 31 chr11 109626614 109626626 -12217230 + B1F SINE Alu 21 149 0 2 1421 252 250 69 0 chr11 109626817 109626889 -12216967 - ID4 SINE ID -6 77 1 2 1421 219 69 0 0 chr11 109627678 109627707 -12216149 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1421 403 193 0 22 chr11 109627726 109627816 -12216040 - B4 SINE B4 -4 288 201 2 1421 1513 255 40 3 chr11 109627826 109628180 -12215676 - MTE2b LTR MaLR -12 367 1 2 1421 473 271 75 8 chr11 109628186 109628320 -12215536 - B4 SINE B4 -98 194 52 2 1421 521 149 0 34 chr11 109628989 109629107 -12214749 + Lx6 LINE L1 7343 7456 -4 2 1421 753 262 65 42 chr11 109630279 109630324 -12213532 - RMER15 LTR ERVL -2 573 528 2 1421 567 0 0 0 chr11 109630324 109630387 -12213469 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1421 753 262 65 42 chr11 109630387 109630604 -12213252 - RMER15 LTR ERVL -48 527 306 2 1421 935 161 96 14 chr11 109630694 109630902 -12212954 + B4 SINE B4 4 228 -64 2 1421 1193 62 0 0 chr11 109630902 109631047 -12212809 + B1_Mus2 SINE Alu 2 146 -1 2 1421 256 24 49 0 chr11 109631098 109631139 -12212717 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 2 1421 405 0 0 0 chr11 109631197 109631242 -12212614 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1421 277 314 72 8 chr11 109632111 109632236 -12211620 - MLT1C LTR MaLR -259 208 76 2 1421 568 261 47 24 chr11 109633349 109633518 -12210338 + B3A SINE B2 44 216 0 2 1421 427 330 99 17 chr11 109633637 109633930 -12209926 - L2a LINE L2 -164 3262 2946 2 1421 504 338 72 25 chr11 109634046 109634322 -12209534 - B4A SINE B4 -2 290 2 2 1421 296 345 122 24 chr11 109634725 109634980 -12208876 + LTR82A LTR ERVL 469 748 -124 2 1421 287 245 4 80 chr11 109635717 109635763 -12208093 - MLT1A0 LTR MaLR -9 356 316 2 1421 2211 164 19 5 chr11 109635763 109636136 -12207720 + ORR1C1 LTR MaLR 1 378 0 2 1421 287 247 10 82 chr11 109636136 109636201 -12207655 - MLT1A0 LTR MaLR -50 315 275 2 1421 1316 252 67 3 chr11 109636206 109636361 -12207495 - MTEb LTR MaLR -15 364 206 2 1421 348 24 0 0 chr11 109636361 109636402 -12207454 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1421 1316 252 67 3 chr11 109636402 109636588 -12207268 - MTEb LTR MaLR -174 205 2 2 1421 344 230 0 75 chr11 109636588 109636682 -12207174 - MLT1A0 LTR MaLR -227 138 52 2 1421 260 197 16 32 chr11 109637399 109637462 -12206394 - MIR SINE MIR -111 97 36 2 1421 907 263 9 14 chr11 109638433 109638653 -12205203 + ID_B1 SINE B4 2 220 -4 2 1421 1205 265 115 51 chr11 109638889 109639490 -12204366 + RLTR18B LTR ERVK 15 613 -3 2 1421 305 233 11 0 chr11 109639738 109639828 -12204028 + (TTTA)n Simple_repeat Simple_repeat 4 94 0 2 1421 837 168 6 11 chr11 109639844 109640025 -12203831 + CT-rich Low_complexity Low_complexity 1 180 0 2 1421 483 147 0 0 chr11 109641279 109641381 -12202475 + (TCCA)n Simple_repeat Simple_repeat 2 103 0 2 1421 347 331 54 54 chr11 109641508 109641821 -12202035 - L2 LINE L2 -359 3060 2748 2 1421 603 0 0 0 chr11 109642427 109642494 -12201362 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 2 1421 288 0 0 0 chr11 109642494 109642525 -12201331 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1421 610 257 29 0 chr11 109642535 109642671 -12201185 - B3 SINE B2 -75 141 2 2 1421 543 290 34 51 chr11 109642673 109642909 -12200947 - B4A SINE B4 -59 233 2 2 1421 1350 261 67 8 chr11 109642938 109643294 -12200562 - MTEa LTR MaLR 0 379 3 2 1421 479 238 148 77 chr11 109643767 109643922 -12199934 - ID_B1 SINE B4 -57 167 2 2 1421 4172 146 100 26 chr11 109644055 109644895 -12198961 + RLTR13D6 LTR ERVK 1 902 0 2 1421 526 152 14 7 chr11 109644907 109645046 -12198810 + (TCCA)n Simple_repeat Simple_repeat 3 142 0 2 1421 198 118 0 0 chr11 109646577 109646611 -12197245 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1421 22 56 0 0 chr11 109646687 109646723 -12197133 + AT_rich Low_complexity Low_complexity 1 36 0 2 1421 1109 83 0 7 chr11 109647221 109647367 -12196489 - B1_Mus1 SINE Alu 0 148 4 2 1421 561 30 0 0 chr11 109647404 109647471 -12196385 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 1421 268 253 51 34 chr11 109647852 109648018 -12195838 - L1M2 LINE L1 -363 5928 5738 2 1421 1621 47 0 0 chr11 109648096 109648287 -12195569 - B2_Mm1a SINE B2 -1 192 2 2 1421 25 31 0 0 chr11 109648454 109648486 -12195370 + AT_rich Low_complexity Low_complexity 1 32 0 2 1421 526 258 288 23 chr11 109648610 109648916 -12194940 - Lx9 LINE L1 -94 7550 7164 2 1421 849 294 142 44 chr11 109648989 109649469 -12194387 - Lx8 LINE L1 -11 7462 6936 2 1421 855 231 96 34 chr11 109650169 109650460 -12193396 + RLTR28B LTR ERVL 1 309 -172 2 1421 4176 125 9 44 chr11 109650462 109651115 -12192741 + Lx4A LINE L1 6427 7056 -2 2 1421 264 174 39 98 chr11 109651195 109651297 -12192559 + RLTR28B LTR ERVL 415 510 -14 2 1421 496 249 74 40 chr11 109651338 109651514 -12192342 + RMER5 LTR ERV1 79 260 -274 2 1421 614 58 39 0 chr11 109652442 109652546 -12191310 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 1421 584 188 345 46 chr11 109653364 109653648 -12190208 + ORR1D2 LTR MaLR 2 370 0 3 1421 214 328 39 62 chr11 109654202 109654332 -12189524 - MER5B DNA MER1_type -32 146 20 3 1421 324 0 0 0 chr11 109654630 109654666 -12189190 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1421 600 308 93 50 chr11 109654672 109654952 -12188904 - B4A SINE B4 0 292 1 3 1421 2085 116 19 6 chr11 109655760 109656080 -12187776 + ORR1A2 LTR MaLR 1 324 -3 3 1421 240 143 0 0 chr11 109656336 109656378 -12187478 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1421 406 272 47 16 chr11 109656392 109656519 -12187337 + MTE2b LTR MaLR 42 172 -207 3 1421 382 309 79 0 chr11 109656539 109656665 -12187191 + MTE2b LTR MaLR 239 374 -5 3 1421 465 192 0 0 chr11 109657574 109657694 -12186162 + (CAT)n Simple_repeat Simple_repeat 1 120 0 3 1421 1762 127 24 27 chr11 109657696 109658029 -12185827 + RMER6B LTR ERVK 130 461 0 3 1421 182 250 21 0 chr11 109658507 109658555 -12185301 - MIRm SINE MIR -188 88 40 3 1421 1313 248 76 31 chr11 109658947 109659209 -12184647 + MT2A LTR ERVL 2 278 -255 3 1421 1120 117 64 0 chr11 109659209 109659380 -12184476 - B2_Mm2 SINE B2 -10 185 4 3 1421 1313 248 76 31 chr11 109659380 109659537 -12184319 + MT2A LTR ERVL 279 440 -93 3 1421 280 288 38 0 chr11 109659821 109659901 -12183955 - MER58B DNA MER1_type 0 341 259 3 1421 490 291 8 16 chr11 109659987 109660116 -12183740 - B4A SINE B4 -164 128 1 3 1421 12880 149 45 29 chr11 109660556 109663894 -12179962 + Lx5 LINE L1 3654 7050 0 3 1421 378 218 45 0 chr11 109663978 109664088 -12179768 + Lx5 LINE L1 6935 7049 -1 3 1421 533 289 103 24 chr11 109664226 109664478 -12179378 - B4 SINE B4 -19 273 2 3 1421 253 0 26 26 chr11 109665043 109665081 -12178775 + (AGGGGG)n Simple_repeat Simple_repeat 1 38 0 3 1421 588 317 73 4 chr11 109665452 109665699 -12178157 - B4 SINE B4 -14 278 15 3 1421 611 26 13 0 chr11 109666160 109666237 -12177619 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3 1421 474 287 16 0 chr11 109666370 109666492 -12177364 - ID_B1 SINE B4 -20 204 81 3 1421 610 297 40 81 chr11 109666629 109666836 -12177020 + MLT1E1 LTR MaLR 1 218 -436 3 1421 950 234 29 0 chr11 109666836 109667045 -12176811 + B3 SINE B2 2 216 0 3 1421 610 297 40 81 chr11 109667045 109667159 -12176697 + MLT1E1 LTR MaLR 219 309 -345 3 1421 334 299 34 8 chr11 109667205 109667323 -12176533 + MLT1E1 LTR MaLR 560 680 0 3 1421 214 320 70 0 chr11 109667341 109667441 -12176415 - MIR SINE MIR -145 117 11 3 1421 300 53 0 0 chr11 109667586 109667624 -12176232 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1421 238 275 102 34 chr11 109668121 109668268 -12175588 + MLT1J LTR MaLR 239 395 -117 3 1421 182 356 11 22 chr11 109669133 109669222 -12174634 + L3 LINE CR1 4215 4302 -187 3 1421 461 237 60 31 chr11 109669230 109669423 -12174433 - MTEb LTR MaLR 0 379 188 3 1421 3570 161 106 65 chr11 109669534 109670389 -12173467 + RMER19B LTR ERVK 1 890 -12 3 1421 315 309 0 0 chr11 109671431 109671515 -12172341 + L2a LINE L2 3341 3424 -2 3 1421 2090 80 22 3 chr11 109671622 109671935 -12171921 + ORR1A2 LTR MaLR 1 319 -8 3 1421 721 249 74 5 chr11 109672837 109673027 -12170829 + ID_B1 SINE B4 9 211 -13 3 1421 216 254 28 0 chr11 109673036 109673107 -12170749 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 3 1421 252 0 0 0 chr11 109673371 109673399 -12170457 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1421 1957 311 15 43 chr11 109673654 109674335 -12169521 + Lx8 LINE L1 6455 7116 -357 3 1421 298 250 0 0 chr11 109674422 109674494 -12169362 + MTEb LTR MaLR 306 377 -2 3 1421 1252 41 0 0 chr11 109674578 109674724 -12169132 + B1_Mus2 SINE Alu 2 147 0 3 1421 1084 258 66 19 chr11 109675249 109675569 -12168287 - ORR1E LTR MaLR 0 359 25 3 1421 276 231 13 13 chr11 109675859 109675938 -12167918 + MTEb LTR MaLR 294 372 -7 3 1421 463 189 0 26 chr11 109675949 109676063 -12167793 + T-rich Low_complexity Low_complexity 5 115 0 3 1421 297 266 16 0 chr11 109676063 109676127 -12167729 + polypyrimidine Low_complexity Low_complexity 1 65 0 3 1421 586 207 12 17 chr11 109676134 109676306 -12167550 + C-rich Low_complexity Low_complexity 2 172 0 3 1421 457 276 26 29 chr11 109676320 109676633 -12167223 + CT-rich Low_complexity Low_complexity 1 311 0 3 1421 180 163 0 0 chr11 109676636 109676679 -12167177 + (CATTT)n Simple_repeat Simple_repeat 3 45 0 3 1421 722 87 0 70 chr11 109676673 109676859 -12166997 + CT-rich Low_complexity Low_complexity 5 177 0 3 1421 284 427 0 0 chr11 109676868 109676964 -12166892 + C-rich Low_complexity Low_complexity 2 97 0 3 1421 933 58 0 0 chr11 109676966 109677086 -12166770 + (TTC)n Simple_repeat Simple_repeat 1 120 0 3 1421 387 0 0 0 chr11 109677738 109677781 -12166075 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1421 180 0 0 0 chr11 109677781 109677800 -12166056 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1421 651 234 173 5 chr11 109677892 109678036 -12165820 - ID_B1 SINE B4 -8 216 50 3 1421 525 80 0 0 chr11 109678036 109678111 -12165745 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1421 651 234 173 5 chr11 109678111 109678151 -12165705 - ID SINE ID -175 49 3 3 1421 354 257 37 19 chr11 109678178 109678285 -12165571 - PB1D10 SINE Alu -8 109 1 3 1421 26 0 0 0 chr11 109679510 109679536 -12164320 + AT_rich Low_complexity Low_complexity 1 26 0 3 1421 23 0 0 0 chr11 109679646 109679669 -12164187 + AT_rich Low_complexity Low_complexity 1 23 0 3 1421 583 332 61 14 chr11 109680362 109680576 -12163280 - B4 SINE B4 0 292 69 3 1421 335 206 14 0 chr11 109680614 109680687 -12163169 - B4 SINE B4 -218 74 1 3 1421 7847 89 7 8 chr11 109680772 109682191 -12161665 - L1_Mus3 LINE L1 -8 6630 5215 3 1421 4428 124 1 5 chr11 109682184 109682857 -12160999 + L1_Mus3 LINE L1 4541 5211 -672 3 1421 474 243 0 0 chr11 109683326 109683429 -12160427 + RSINE1 SINE B4 3 105 -60 3 1421 239 148 37 0 chr11 109683430 109683484 -12160372 + C-rich Low_complexity Low_complexity 3 58 0 3 1421 327 280 29 82 chr11 109684019 109684225 -12159631 + MIRb SINE MIR 34 228 -40 3 1421 223 204 0 129 chr11 109684515 109684577 -12159279 + PB1D10 SINE Alu 21 74 -43 3 1421 462 224 539 11 chr11 109684622 109684795 -12159061 + B4 SINE B4 8 272 -20 3 1421 608 0 14 0 chr11 109684835 109684907 -12158949 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1421 447 287 32 45 chr11 109685590 109685747 -12158109 + B4A SINE B4 128 282 -10 3 1421 314 346 0 100 chr11 109686023 109686203 -12157653 + MER2 DNA MER2_type 8 169 -176 3 1421 1703 296 49 19 chr11 109686272 109686864 -12156992 - Lx8 LINE L1 -5 7468 6859 3 1421 232 182 43 43 chr11 109687174 109687283 -12156573 + CT-rich Low_complexity Low_complexity 1 109 0 3 1421 283 259 0 124 chr11 109687284 109687381 -12156475 - PB1D10 SINE Alu -31 86 2 3 1421 248 360 77 32 chr11 109687441 109687754 -12156102 + LTR81A LTR ERV1? 111 437 -913 3 1421 615 279 0 0 chr11 109688619 109688759 -12155097 + B1_Mur1 SINE Alu 1 140 -9 3 1421 832 96 0 22 chr11 109689849 109689988 -12153868 + (TCTCC)n Simple_repeat Simple_repeat 2 137 0 3 1421 261 353 46 7 chr11 109690066 109690219 -12153637 - L1M5 LINE L1 -3344 2802 2645 3 1421 396 0 0 0 chr11 109690381 109690425 -12153431 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1421 249 33 0 0 chr11 109690684 109690714 -12153142 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1421 1601 187 63 31 chr11 109691000 109691381 -12152475 + MTD LTR MaLR 12 404 -15 3 1421 23 0 0 0 chr11 109691716 109691739 -12152117 + AT_rich Low_complexity Low_complexity 1 23 0 3 1421 233 343 128 0 chr11 109692479 109692581 -12151275 + MIR SINE MIR 84 198 -64 3 1421 1351 300 57 30 chr11 109693518 109694044 -12149812 + Lx8 LINE L1 6777 7316 -157 3 1421 420 67 0 0 chr11 109694044 109694104 -12149752 + (CAGA)n Simple_repeat Simple_repeat 3 62 0 3 1421 514 371 0 6 chr11 109694279 109694447 -12149409 + B4A SINE B4 44 210 -82 3 1421 808 226 58 29 chr11 109694726 109694931 -12148925 + Lx8 LINE L1 6810 7020 -453 3 1421 450 128 0 0 chr11 109695055 109695149 -12148707 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1421 282 116 0 0 chr11 109696134 109696177 -12147679 + (TTA)n Simple_repeat Simple_repeat 1 43 0 3 1421 527 247 0 120 chr11 109696189 109696219 -12147637 - B4A SINE B4 -38 254 234 3 1421 872 217 161 52 chr11 109696219 109696549 -12147307 - ORR1D2 LTR MaLR -4 366 1 3 1421 527 247 0 120 chr11 109696549 109696693 -12147163 - B4A SINE B4 -59 233 101 3 1421 321 287 106 8 chr11 109696696 109696819 -12147037 + B3 SINE B2 78 212 -4 3 1421 231 114 0 0 chr11 109696819 109696854 -12147002 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 3 1421 549 0 0 0 chr11 109696979 109697040 -12146816 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1421 844 219 17 52 chr11 109697620 109697851 -12146005 - MTD LTR MaLR -4 415 193 3 1421 3055 63 0 30 chr11 109697858 109698264 -12145592 - L1_Mus1 LINE L1 0 6567 6174 3 1421 1744 60 0 0 chr11 109698264 109698480 -12145376 + L1_Mus1 LINE L1 5923 6138 -429 3 1421 678 216 49 116 chr11 109698480 109698705 -12145151 - MTD LTR MaLR -209 210 1 3 1421 736 285 67 48 chr11 109698916 109699229 -12144627 + ORR1E LTR MaLR 1 319 -40 3 1421 602 331 0 0 chr11 109699645 109699802 -12144054 - RSINE1 SINE B4 -6 159 3 3 1421 1156 54 0 39 chr11 109700253 109700406 -12143450 - B1_Mus1 SINE Alu -1 147 1 3 1421 711 238 6 6 chr11 109700512 109700872 -12142984 + (TG)n Simple_repeat Simple_repeat 1 360 0 3 1421 1107 44 0 0 chr11 109701422 109701559 -12142297 + (TCTA)n Simple_repeat Simple_repeat 1 137 0 3 1421 688 274 22 0 chr11 109701560 109701739 -12142117 - ID_B1 SINE B4 -5 219 37 3 1421 197 362 87 0 chr11 109701787 109701914 -12141942 + MIR SINE MIR 112 249 -13 3 1421 1986 136 4 82 chr11 109701970 109702362 -12141494 + ORR1B1 LTR MaLR 29 386 -8 3 1421 894 279 11 72 chr11 109702383 109702661 -12141195 - B4A SINE B4 -31 261 1 3 1421 797 266 50 118 chr11 109703869 109703968 -12139888 + ORR1E LTR MaLR 3 99 -260 4 1421 615 27 0 0 chr11 109703968 109704041 -12139815 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1421 797 266 50 118 chr11 109704041 109704102 -12139754 + ORR1E LTR MaLR 100 176 -183 4 1421 1212 50 0 0 chr11 109704102 109704262 -12139594 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 4 1421 797 266 50 118 chr11 109704262 109704291 -12139565 + ORR1E LTR MaLR 177 187 -172 4 1421 450 127 0 0 chr11 109704291 109704362 -12139494 + (TCCA)n Simple_repeat Simple_repeat 2 72 0 4 1421 797 266 50 118 chr11 109704362 109704553 -12139303 + ORR1E LTR MaLR 188 358 -1 4 1421 408 284 45 47 chr11 109704570 109704791 -12139065 + MLT2B4 LTR ERVL 12 246 -168 4 1421 235 287 31 21 chr11 109705013 109705109 -12138747 - MIRc SINE MIR -171 97 1 4 1421 767 275 64 10 chr11 109705590 109705792 -12138064 - ID_B1 SINE B4 -7 217 5 4 1421 353 285 87 35 chr11 109706307 109706536 -12137320 + L1M5 LINE L1 2113 2353 -3793 4 1421 914 107 52 7 chr11 109706538 109706705 -12137151 + B2_Mm2 SINE B2 37 216 0 4 1421 338 0 24 0 chr11 109706922 109706964 -12136892 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 4 1421 230 357 39 8 chr11 109707032 109707159 -12136697 + MER58A DNA MER1_type 48 178 -46 4 1422 842 287 106 36 chr11 109707548 109707992 -12135864 - Lx8 LINE L1 -2 7471 6997 4 1422 189 0 0 0 chr11 109708046 109708067 -12135789 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 4 1422 448 242 21 53 chr11 109708319 109708507 -12135349 - RLTR12B LTR ERVK -46 482 301 4 1422 548 255 84 76 chr11 109708586 109708811 -12135045 - RLTR11B LTR ERVK -211 242 16 4 1422 21 0 0 0 chr11 109708829 109708850 -12135006 + AT_rich Low_complexity Low_complexity 1 21 0 4 1422 183 100 0 0 chr11 109708901 109708931 -12134925 + (GTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1422 296 272 0 58 chr11 109708949 109709035 -12134821 - ID4 SINE ID 0 83 3 4 1422 495 277 119 38 chr11 109709035 109709355 -12134501 + L1MEg LINE L1 2025 2362 -5188 4 1422 722 188 0 0 chr11 109710204 109710342 -12133514 + B1_Mm SINE Alu 7 144 -3 4 1422 328 344 0 0 chr11 109710515 109710605 -12133251 - L2c LINE L2 -6 3381 3292 4 1422 1058 64 7 7 chr11 109710673 109710807 -12133049 + B1_Mus2 SINE Alu 1 134 -13 4 1422 516 16 0 0 chr11 109710807 109710868 -12132988 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 4 1422 1725 194 3 190 chr11 109712089 109712764 -12131092 + RMER19C LTR ERVK 1 549 -62 4 1422 321 74 18 18 chr11 109712762 109712817 -12131039 - ORR1A2 LTR MaLR -273 56 2 4 1422 759 229 110 136 chr11 109712848 109713328 -12130528 - RMER4B LTR ERVK -24 587 17 4 1422 645 221 52 151 chr11 109713370 109713714 -12130142 - B4 SINE B4 0 292 6 4 1422 332 292 83 36 chr11 109713971 109714165 -12129691 + MLT1F2 LTR MaLR 244 489 -71 4 1422 405 0 0 0 chr11 109714165 109714210 -12129646 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1422 332 285 162 56 chr11 109714210 109714256 -12129600 + MLT1F2 LTR MaLR 490 501 -59 4 1422 782 133 0 96 chr11 109715032 109715240 -12128616 + RMER17C LTR ERVK 2 189 -221 4 1422 450 0 0 0 chr11 109715240 109715290 -12128566 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1422 465 206 42 67 chr11 109715290 109715401 -12128455 + RMER17C LTR ERVK 291 410 0 4 1422 349 326 27 7 chr11 109715419 109715567 -12128289 + MIRb SINE MIR 86 236 -32 4 1422 1046 263 89 36 chr11 109716614 109716973 -12126883 - MTE2b LTR MaLR -1 378 1 4 1422 310 229 16 44 chr11 109718771 109718954 -12124902 + (TATG)n Simple_repeat Simple_repeat 1 178 0 4 1422 4506 178 44 93 chr11 109718978 109719425 -12124431 + RMER12 LTR ERVK 1 437 -885 4 1422 1164 82 0 0 chr11 109719425 109719572 -12124284 + B1_Mus2 SINE Alu 1 147 0 4 1422 4506 184 62 92 chr11 109719572 109720505 -12123351 + RMER12 LTR ERVK 438 1846 -2 4 1422 206 270 0 22 chr11 109720509 109720600 -12123256 + (TATG)n Simple_repeat Simple_repeat 4 92 0 4 1422 1335 217 179 5 chr11 109720683 109721084 -12122772 - Lx8 LINE L1 -2 7471 7001 4 1422 633 284 21 59 chr11 109721125 109721364 -12122492 - B4A SINE B4 -62 230 1 4 1422 360 0 0 0 chr11 109722473 109722513 -12121343 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1422 480 246 26 17 chr11 109722530 109722646 -12121210 - B3A SINE B2 -81 117 1 4 1422 5555 123 107 54 chr11 109723159 109724047 -12119809 + RMER12 LTR ERVK 1 876 -446 4 1422 324 0 0 0 chr11 109724047 109724083 -12119773 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1422 5555 123 107 54 chr11 109724083 109724349 -12119507 + RMER12 LTR ERVK 877 1216 -106 4 1422 227 300 68 110 chr11 109724620 109724766 -12119090 - MTEa LTR MaLR -195 184 45 4 1422 453 285 94 7 chr11 109724781 109724919 -12118937 + RSINE1 SINE B4 5 154 -11 4 1422 32 43 0 0 chr11 109724933 109724979 -12118877 + AT_rich Low_complexity Low_complexity 1 46 0 4 1422 1474 225 17 70 chr11 109725386 109725744 -12118112 - ORR1E LTR MaLR -9 350 12 4 1422 641 351 67 21 chr11 109725803 109726239 -12117617 - L1MA5 LINE L1 -424 5876 5421 4 1422 289 226 11 67 chr11 109726263 109726353 -12117503 + MTEb LTR MaLR 9 93 -286 4 1422 407 144 289 26 chr11 109726487 109726601 -12117255 - MTC LTR MaLR -126 295 152 4 1422 353 264 26 8 chr11 109726664 109726781 -12117075 + MTEb LTR MaLR 214 358 -21 4 1422 387 192 0 0 chr11 109726824 109726897 -12116959 - RLTR28B LTR ERVL 0 524 452 4 1422 802 173 39 0 chr11 109726897 109727053 -12116803 - RLTR28B LTR ERVL -319 162 1 4 1422 889 147 11 34 chr11 109727111 109727287 -12116569 + MTB_Mm LTR MaLR 1 172 -235 4 1422 285 351 85 0 chr11 109727380 109727545 -12116311 - L1M3 LINE L1 -1904 4236 4058 4 1422 353 307 0 17 chr11 109727554 109727666 -12116190 + B4 SINE B4 117 226 -66 4 1422 597 288 19 0 chr11 109727666 109727826 -12116030 + B3 SINE B2 2 164 -52 4 1422 597 28 0 0 chr11 109727826 109727897 -12115959 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1422 664 117 34 14 chr11 109728686 109728895 -12114961 + (TCTA)n Simple_repeat Simple_repeat 1 213 0 4 1422 3192 161 54 13 chr11 109728895 109729511 -12114345 + RLTR26 LTR ERVK 2 642 0 4 1422 594 147 23 17 chr11 109729539 109729712 -12114144 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 4 1422 283 125 28 0 chr11 109729723 109729795 -12114061 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 4 1422 743 244 18 0 chr11 109730035 109730199 -12113657 + B3A SINE B2 16 182 -16 4 1422 960 126 0 0 chr11 109731007 109731158 -12112698 + (TTC)n Simple_repeat Simple_repeat 1 151 0 4 1422 718 108 7 21 chr11 109731159 109731219 -12112637 + (TTCTCC)n Simple_repeat Simple_repeat 4 62 0 4 1422 1105 108 11 0 chr11 109731219 109731395 -12112461 + (TCC)n Simple_repeat Simple_repeat 2 179 0 4 1422 1522 0 11 0 chr11 109731395 109731573 -12112283 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1422 718 108 7 21 chr11 109731573 109731653 -12112203 + (TTCTCC)n Simple_repeat Simple_repeat 2 81 0 4 1422 1065 111 0 22 chr11 109731653 109731837 -12112019 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1422 387 0 0 0 chr11 109732162 109732205 -12111651 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1422 247 178 36 131 chr11 109732208 109732292 -12111564 - B4 SINE B4 -26 266 191 4 1422 339 180 117 109 chr11 109732931 109733068 -12110788 + B1_Mur3 SINE Alu 4 141 -8 4 1422 270 0 0 0 chr11 109733110 109733140 -12110716 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1422 271 240 39 26 chr11 109733397 109733474 -12110382 + MLT1A0 LTR MaLR 211 288 -77 4 1422 776 246 106 67 chr11 109733586 109733944 -12109912 + RLTR14 LTR ERV1 11 382 0 4 1422 835 294 5 0 chr11 109734019 109734223 -12109633 - B3 SINE B2 -6 210 6 4 1422 1168 74 0 0 chr11 109734656 109734804 -12109052 + B1_Mus1 SINE Alu 1 148 0 4 1422 239 389 0 0 chr11 109735320 109735410 -12108446 - L3 LINE CR1 -7 4482 4393 4 1422 229 281 34 0 chr11 109735666 109735755 -12108101 - MIR SINE MIR -77 185 94 4 1422 854 274 93 12 chr11 109736059 109736317 -12107539 + B4A SINE B4 2 280 -12 4 1422 522 93 0 0 chr11 109736686 109736772 -12107084 + (CCAA)n Simple_repeat Simple_repeat 2 87 0 4 1422 1298 90 21 26 chr11 109737653 109737847 -12106009 + B2_Mm2 SINE B2 1 193 -2 4 1422 351 273 16 16 chr11 109738013 109738136 -12105720 - RSINE1 SINE B4 -40 125 3 4 1422 594 204 0 0 chr11 109738813 109739080 -12104776 + (CA)n Simple_repeat Simple_repeat 1 267 0 4 1422 999 170 0 11 chr11 109739092 109739540 -12104316 + (CA)n Simple_repeat Simple_repeat 1 443 0 4 1422 969 152 0 0 chr11 109739551 109739817 -12104039 + (CA)n Simple_repeat Simple_repeat 1 266 0 4 1422 228 200 0 0 chr11 109740715 109740765 -12103091 + CT-rich Low_complexity Low_complexity 2 51 0 4 1422 294 253 12 12 chr11 109740775 109740855 -12103001 - ID4_ SINE ID -1 82 3 4 1422 285 182 0 0 chr11 109741247 109741302 -12102554 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1422 1078 105 6 23 chr11 109741456 109741468 -12102388 - B2_Mm1t SINE B2 -21 172 164 4 1422 194 0 0 37 chr11 109741468 109741495 -12102361 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4 1422 1078 105 6 23 chr11 109741495 109741657 -12102199 - B2_Mm1t SINE B2 -30 163 1 4 1422 401 36 0 18 chr11 109741657 109741713 -12102143 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 4 1422 3414 134 34 4 chr11 109741714 109742238 -12101618 - Lx4A LINE L1 -14 7044 6505 4 1422 692 75 53 0 chr11 109742238 109742332 -12101524 + Lx4B LINE L1 6322 6420 -638 4 1422 2157 88 3 59 chr11 109742332 109742670 -12101186 + ORR1A2 LTR MaLR 1 319 -8 4 1422 9474 109 227 4 chr11 109742674 109744279 -12099577 + ORR1A2-int LTR MaLR 1 1963 0 4 1422 547 116 0 0 chr11 109744280 109744366 -12099490 + ORR1A2 LTR MaLR 2 87 -240 4 1422 278 114 0 0 chr11 109744357 109744401 -12099455 + ORR1A2 LTR MaLR 351 394 0 4 1422 514 68 0 76 chr11 109744401 109744480 -12099376 + Lx4B LINE L1 6416 6488 -570 4 1422 644 234 13 6 chr11 109744472 109744631 -12099225 - L1_Mur3 LINE L1 -417 5463 5304 4 1422 761 80 9 0 chr11 109744671 109744783 -12099073 + B1_Mus2 SINE Alu 35 147 0 4 1422 318 150 0 0 chr11 109744785 109744830 -12099026 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1422 399 68 0 0 chr11 109744830 109744889 -12098967 + (CCAA)n Simple_repeat Simple_repeat 1 59 0 4 1422 318 150 0 0 chr11 109744889 109744923 -12098933 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1422 261 159 0 0 chr11 109745046 109745109 -12098747 + A-rich Low_complexity Low_complexity 1 63 0 4 1422 329 259 78 39 chr11 109745551 109745704 -12098152 - MYSERV16_I-int LTR ERVK -4189 1333 1175 4 1422 228 309 0 0 chr11 109745764 109745819 -12098037 - ID_B1 SINE B4 -41 183 129 4 1422 508 285 44 11 chr11 109745823 109746004 -12097852 - L1M4 LINE L1 -1019 5127 4941 4 1422 231 321 57 45 chr11 109747253 109747341 -12096515 - PB1D10 SINE Alu -28 89 1 4 1422 596 245 7 59 chr11 109747341 109747422 -12096434 - ID SINE ID -147 77 5 4 1422 186 43 0 0 chr11 109747815 109747838 -12096018 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1422 1049 95 0 7 chr11 109747838 109747976 -12095880 - B1_Mus2 SINE Alu -9 138 1 5 1422 1335 235 12 39 chr11 109748058 109748246 -12095610 - MTD LTR MaLR -92 327 140 5 1422 2000 137 31 6 chr11 109748246 109748563 -12095293 + ORR1A4 LTR MaLR 5 329 0 5 1422 1335 235 12 39 chr11 109748563 109748710 -12095146 - MTD LTR MaLR -280 139 1 5 1422 477 0 0 0 chr11 109749016 109749069 -12094787 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1422 968 275 98 32 chr11 109749461 109749837 -12094019 + MTD LTR MaLR 18 418 -1 5 1422 992 196 14 37 chr11 109749885 109750102 -12093754 - MYSERV16_I-int LTR ERVK -2032 294 83 4 1422 310 169 46 0 chr11 109750114 109750179 -12093677 + RLTR11A LTR ERVK 1 68 -460 5 1422 1050 229 20 119 chr11 109750192 109750594 -12093262 + RLTR11A LTR ERVK 166 527 -1 5 1422 797 194 0 0 chr11 109751985 109752119 -12091737 + B1_Mus1 SINE Alu 3 136 -12 5 1422 22 56 0 0 chr11 109752133 109752169 -12091687 + AT_rich Low_complexity Low_complexity 1 36 0 5 1422 420 20 0 0 chr11 109752242 109752291 -12091565 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1422 476 258 164 31 chr11 109752301 109752557 -12091299 - B4A SINE B4 -2 290 1 5 1422 225 0 0 0 chr11 109752614 109752639 -12091217 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1422 2594 136 11 51 chr11 109754066 109754538 -12089318 + RLTR11B LTR ERVK 1 453 0 5 1422 292 264 112 67 chr11 109754785 109754847 -12089009 + MER58C DNA MER1_type 19 90 -125 5 1422 2068 35 23 11 chr11 109754847 109755109 -12088747 - L1Md_F3 LINE L1 0 6584 6320 5 1422 292 264 112 67 chr11 109755109 109755180 -12088676 + MER58C DNA MER1_type 91 157 -58 5 1422 263 362 0 0 chr11 109755298 109755392 -12088464 + MER74A LTR ERVL 95 188 -370 5 1422 2208 115 61 150 chr11 109755463 109755935 -12087921 - RLTR23 LTR ERV1 0 430 1 5 1422 270 395 35 10 chr11 109755965 109756162 -12087694 + MLT1C LTR MaLR 262 463 -4 5 1422 24 53 0 0 chr11 109757277 109757315 -12086541 + AT_rich Low_complexity Low_complexity 1 38 0 5 1422 12479 256 32 34 chr11 109758310 109759931 -12083925 + ETnERV2-int LTR ERVK 2375 4796 -2610 5 1422 3770 72 87 19 chr11 109759931 109760459 -12083397 - LTRIS2 LTR ERV1 0 564 1 5 1422 12479 180 16 16 chr11 109760459 109761924 -12081932 + ETnERV2-int LTR ERVK 4797 6240 -1166 5 1422 402 245 168 24 chr11 109761975 109762142 -12081714 + ETnERV2-int LTR ERVK 6233 6423 -983 5 1422 307 184 25 50 chr11 109762304 109762384 -12081472 + ETnERV2-int LTR ERVK 7327 7404 -2 5 1422 2193 121 13 35 chr11 109762385 109762761 -12081095 + RLTR9A LTR ERVK 1 368 0 5 1422 1622 27 0 0 chr11 109762819 109763002 -12080854 - L1_Mus1 LINE L1 -127 6440 6258 5 1422 848 43 17 0 chr11 109763002 109763118 -12080738 + L1_Mus1 LINE L1 6450 6567 0 5 1422 553 228 0 0 chr11 109763756 109763857 -12079999 - RSINE1 SINE B4 -39 126 26 5 1422 190 264 38 0 chr11 109764063 109764116 -12079740 - L4 LINE RTE -1326 703 649 5 1422 7472 152 32 57 chr11 109764762 109764857 -12078999 - Lx3A LINE L1 -2 6979 6868 5 1422 207 0 0 0 chr11 109764857 109764880 -12078976 + (C)n Simple_repeat Simple_repeat 1 23 0 5 1422 7472 136 32 44 chr11 109764880 109766257 -12077599 - Lx3A LINE L1 -114 6867 5546 5 1422 3005 146 55 51 chr11 109766640 109767205 -12076651 - RMER2 LTR ERV1 0 567 1 5 1422 223 380 28 0 chr11 109767344 109767452 -12076404 - MIRb SINE MIR -151 117 7 5 1422 477 148 0 0 chr11 109767770 109767851 -12076005 + (TCCC)n Simple_repeat Simple_repeat 1 81 0 5 1422 933 172 0 0 chr11 109767851 109767996 -12075860 - B1_Mur4 SINE Alu -5 145 1 5 1422 452 48 0 16 chr11 109768005 109768069 -12075787 + (CACCC)n Simple_repeat Simple_repeat 5 67 0 5 1422 305 19 0 69 chr11 109768073 109768131 -12075725 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 5 1422 247 182 0 0 chr11 109768268 109768312 -12075544 - PB1D7 SINE Alu -75 45 2 5 1422 985 212 75 137 chr11 109768392 109768714 -12075142 + MT2A LTR ERVL 1 302 -231 5 1422 1102 200 25 33 chr11 109768688 109768931 -12074925 + MTC LTR MaLR 181 421 0 5 1422 426 39 0 0 chr11 109769436 109769488 -12074368 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1422 1979 179 100 13 chr11 109770378 109770826 -12073030 + RMER2 LTR ERV1 1 487 -80 5 1422 424 269 22 51 chr11 109770838 109770975 -12072881 - B1F SINE Alu -3 146 14 5 1422 519 156 0 48 chr11 109771844 109772033 -12071823 + CT-rich Low_complexity Low_complexity 1 180 0 5 1422 666 183 0 0 chr11 109772053 109772287 -12071569 + CT-rich Low_complexity Low_complexity 1 234 0 5 1422 198 150 0 0 chr11 109772293 109772333 -12071523 + (TCC)n Simple_repeat Simple_repeat 1 40 0 5 1422 192 40 0 0 chr11 109772674 109772699 -12071157 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 5 1422 631 317 11 13 chr11 109772704 109772926 -12070930 - B4 SINE B4 -69 223 2 5 1422 3493 33 0 0 chr11 109773159 109773555 -12070301 - MTA_Mm LTR MaLR 0 396 1 5 1422 255 157 0 0 chr11 109773874 109773925 -12069931 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1422 22 56 0 0 chr11 109774227 109774263 -12069593 + AT_rich Low_complexity Low_complexity 1 36 0 5 1422 2401 118 141 12 chr11 109774451 109774878 -12068978 + RLTR45 LTR ERVK 1 482 0 5 1422 935 75 8 0 chr11 109774886 109775019 -12068837 + (GGA)n Simple_repeat Simple_repeat 3 136 0 5 1422 3755 71 34 12 chr11 109775024 109775592 -12068264 - RLTR13D1 LTR ERVK 0 806 227 5 1422 3015 125 31 24 chr11 109775565 109776104 -12067752 - RLTR13D1 LTR ERVK -359 543 1 5 1422 1072 83 0 32 chr11 109776106 109776157 -12067699 + (GAA)n Simple_repeat Simple_repeat 1 51 0 5 1422 707 33 0 11 chr11 109776157 109776248 -12067608 + (AGGGGG)n Simple_repeat Simple_repeat 5 94 0 5 1422 1072 72 0 28 chr11 109776248 109776403 -12067453 + (GAA)n Simple_repeat Simple_repeat 1 150 0 5 1422 21 36 0 0 chr11 109776871 109776899 -12066957 + AT_rich Low_complexity Low_complexity 1 28 0 5 1422 811 282 21 57 chr11 109777250 109777532 -12066324 + B4A SINE B4 2 273 -19 5 1422 238 261 34 0 chr11 109777658 109777746 -12066110 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1422 767 321 3 1 chr11 109778903 109779093 -12064763 - B3A SINE B2 -23 193 1 5 1422 27 29 0 0 chr11 109779093 109779127 -12064729 + AT_rich Low_complexity Low_complexity 1 34 0 5 1422 639 0 0 0 chr11 109779384 109779455 -12064401 + (TTC)n Simple_repeat Simple_repeat 3 73 0 5 1422 1267 57 0 0 chr11 109781107 109781265 -12062591 - B2_Mm2 SINE B2 -37 158 1 5 1422 2395 92 0 9 chr11 109782206 109782535 -12061321 - ORR1A3 LTR MaLR 0 326 1 5 1422 253 260 14 14 chr11 109783024 109783098 -12060758 - ORR1D1 LTR MaLR -293 81 8 5 1422 509 306 89 79 chr11 109784126 109784406 -12059450 + B4A SINE B4 1 283 -9 5 1422 1561 203 78 9 chr11 109784802 109785149 -12058707 + ORR1D1 LTR MaLR 4 374 0 5 1422 1245 292 49 15 chr11 109785479 109785868 -12057988 + MTD LTR MaLR 18 419 0 5 1422 1047 281 212 40 chr11 109785868 109786167 -12057689 + MTD-int LTR MaLR 1 377 -881 5 1422 2919 95 42 27 chr11 109786167 109786642 -12057214 - RLTR45 LTR ERVK 0 482 1 5 1422 1047 281 212 40 chr11 109786642 109786771 -12057085 + MTD-int LTR MaLR 378 503 -755 5 1422 1662 238 57 40 chr11 109786784 109787379 -12056477 + RMER12 LTR ERVK 1 808 -596 5 1422 1214 298 63 8 chr11 109787442 109787824 -12056032 + MTD LTR MaLR 17 419 0 5 1422 591 216 215 6 chr11 109789103 109789266 -12054590 - B3A SINE B2 0 198 2 5 1422 2598 224 105 12 chr11 109789831 109790505 -12053351 - RMER19A LTR ERVK 0 737 1 5 1422 480 243 107 0 chr11 109790708 109790811 -12053045 + B1_Mur1 SINE Alu 1 114 -35 5 1422 264 247 22 45 chr11 109790833 109790922 -12052934 + CT-rich Low_complexity Low_complexity 1 87 0 5 1422 1331 190 149 37 chr11 109791292 109791598 -12052258 + RMER19C LTR ERVK 1 342 -269 5 1422 1299 115 55 113 chr11 109791598 109791854 -12052002 - RLTR22_Mur LTR ERVK 0 1848 1608 5 1422 7522 53 1 10 chr11 109791883 109792956 -12050900 - L1Md_F2 LINE L1 0 6582 5520 5 1422 1216 87 6 0 chr11 109792959 109793132 -12050724 - Lx2A1 LINE L1 -358 6650 6477 5 1422 2224 102 14 50 chr11 109793132 109793492 -12050364 + Lx2A1 LINE L1 6662 7008 0 5 1422 9223 92 68 89 chr11 109793534 109794323 -12049533 - RLTR22_Mur LTR ERVK -235 1613 861 5 1422 207 0 0 0 chr11 109794323 109794346 -12049510 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1422 9223 92 68 89 chr11 109794346 109795053 -12048803 - RLTR22_Mur LTR ERVK -988 860 153 5 1422 351 0 0 0 chr11 109795053 109795092 -12048764 + (TAA)n Simple_repeat Simple_repeat 3 41 0 5 1422 9223 92 68 89 chr11 109795092 109795242 -12048614 - RLTR22_Mur LTR ERVK -1696 152 2 5 1422 1327 214 21 11 chr11 109795242 109795514 -12048342 + RMER19C LTR ERVK 336 610 -1 5 1422 326 77 0 119 chr11 109796610 109796669 -12047187 - RMER6B LTR ERVK -409 52 1 5 1422 1090 68 17 17 chr11 109796706 109796886 -12046970 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 5 1422 261 306 0 0 chr11 109796903 109796975 -12046881 - PB1D7 SINE Alu 0 120 49 5 1422 496 342 76 0 chr11 109797223 109797381 -12046475 - B4A SINE B4 -122 170 1 5 1422 917 296 46 0 chr11 109798698 109798958 -12044898 - B4A SINE B4 -4 288 17 5 1422 276 30 0 0 chr11 109799404 109799437 -12044419 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1422 600 309 32 32 chr11 109800898 109801115 -12042741 - B4 SINE B4 -73 219 3 5 1422 501 32 0 0 chr11 109801703 109801766 -12042090 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1422 203 368 65 30 chr11 109802320 109802488 -12041368 - MIRb SINE MIR -69 199 26 5 1422 832 229 43 30 chr11 109804036 109804266 -12039590 + Lx8 LINE L1 6905 7137 -336 5 1422 4044 172 21 3 chr11 109804877 109805995 -12037861 + L1_Mur2 LINE L1 901 2042 -3835 5 1422 895 188 293 14 chr11 109805995 109806275 -12037581 + Lx5 LINE L1 5842 6199 -851 5 1422 2210 194 37 18 chr11 109806276 109806764 -12037092 + Lx5 LINE L1 5870 6366 -684 5 1422 195 42 0 0 chr11 109808816 109808840 -12035016 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1422 230 73 24 0 chr11 109809158 109809199 -12034657 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1422 676 111 40 23 chr11 109809383 109809558 -12034298 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 1422 644 116 45 16 chr11 109809582 109809827 -12034029 + (TG)n Simple_repeat Simple_repeat 1 252 0 5 1422 482 316 71 43 chr11 109809836 109810117 -12033739 - B4A SINE B4 -2 290 2 5 1422 369 0 0 0 chr11 109810438 109810479 -12033377 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1422 680 256 101 11 chr11 109810528 109810565 -12033291 - B3A SINE B2 -4 194 159 5 1422 333 0 0 0 chr11 109810565 109810602 -12033254 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1422 680 256 101 11 chr11 109810602 109810742 -12033114 - B3A SINE B2 -40 158 1 5 1422 192 77 0 0 chr11 109811847 109811873 -12031983 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1422 1051 187 41 5 chr11 109812792 109812986 -12030870 + B3 SINE B2 1 201 -15 5 1422 290 302 135 25 chr11 109813195 109813358 -12030498 - B4 SINE B4 -6 286 106 5 1422 217 305 12 24 chr11 109814109 109814193 -12029663 - ID4 SINE ID 0 83 1 5 1422 504 0 0 0 chr11 109814599 109814655 -12029201 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1422 366 61 0 0 chr11 109814656 109814705 -12029151 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1422 288 218 13 0 chr11 109815359 109815437 -12028419 + L1M4b LINE L1 110 188 -7146 6 1422 454 235 338 9 chr11 109815527 109815746 -12028110 + B4A SINE B4 2 292 0 6 1422 384 309 83 0 chr11 109815900 109816130 -12027726 + L1M4 LINE L1 5558 5806 -378 6 1422 180 0 0 0 chr11 109816615 109816635 -12027221 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 6 1422 880 141 6 19 chr11 109816635 109816794 -12027062 - B2_Mm2 SINE B2 -37 158 2 6 1422 28 91 0 0 chr11 109817132 109817209 -12026647 + AT_rich Low_complexity Low_complexity 1 77 0 6 1422 572 342 32 18 chr11 109817506 109817786 -12026070 + B4A SINE B4 1 284 -8 6 1422 888 278 82 18 chr11 109818806 109819088 -12024768 + Lx8 LINE L1 7050 7349 -124 6 1422 583 351 14 28 chr11 109819089 109819303 -12024553 + B4 SINE B4 82 292 0 6 1422 637 241 58 0 chr11 109819845 109819982 -12023874 - MTE2b LTR MaLR -108 271 127 6 1422 396 336 89 60 chr11 109820429 109820836 -12023020 + L1MEf LINE L1 936 1377 -5032 6 1422 238 260 26 13 chr11 109821122 109821200 -12022656 + CT-rich Low_complexity Low_complexity 1 79 0 6 1422 1148 107 0 11 chr11 109821200 109821380 -12022476 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 6 1422 646 88 57 17 chr11 109821380 109821619 -12022237 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 6 1422 1102 24 47 6 chr11 109821631 109821801 -12022055 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 6 1422 425 327 155 23 chr11 109822215 109822647 -12021209 + L1MEf LINE L1 2370 2858 -3548 6 1422 237 319 106 77 chr11 109825156 109825248 -12018608 - MER58B DNA MER1_type -1 340 234 6 1422 261 0 0 0 chr11 109825248 109825277 -12018579 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1422 237 319 106 77 chr11 109825277 109825354 -12018502 - MER58B DNA MER1_type -108 233 166 6 1422 279 305 83 37 chr11 109826127 109826236 -12017620 + MLT1A1 LTR MaLR 1 114 -294 6 1422 625 249 176 12 chr11 109826755 109826999 -12016857 + B4 SINE B4 1 284 -8 6 1422 5877 64 9 4 chr11 109827094 109827861 -12015995 + L1_Mus3 LINE L1 5861 6631 -7 6 1422 445 358 23 6 chr11 109828554 109828728 -12015128 + MIR SINE MIR 15 191 -71 6 1422 557 226 8 39 chr11 109829302 109829431 -12014425 - B4A SINE B4 -87 205 81 6 1422 754 251 82 0 chr11 109829450 109829645 -12014211 - B3 SINE B2 -5 211 1 6 1422 423 286 0 0 chr11 109829649 109829740 -12014116 - B4 SINE B4 -199 93 3 6 1422 248 270 50 83 chr11 109830055 109830176 -12013680 + MLT1A1 LTR MaLR 426 542 -7 6 1422 21 36 0 0 chr11 109831014 109831042 -12012814 + AT_rich Low_complexity Low_complexity 1 28 0 6 1422 318 87 0 0 chr11 109832415 109832461 -12011395 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1422 359 298 82 8 chr11 109832478 109832600 -12011256 + B1_Mus1 SINE Alu 11 141 -7 6 1422 243 279 15 0 chr11 109832616 109832684 -12011172 + ID4_ SINE ID 2 70 -13 6 1422 630 135 0 0 chr11 109832692 109832796 -12011060 + (GGGA)n Simple_repeat Simple_repeat 2 105 0 6 1422 216 0 0 0 chr11 109832797 109832821 -12011035 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 6 1422 308 257 261 17 chr11 109834250 109834365 -12009491 - B1F SINE Alu -2 147 5 6 1422 302 268 14 14 chr11 109834638 109834710 -12009146 + ID4 SINE ID 2 73 -10 6 1422 537 121 0 0 chr11 109835389 109835472 -12008384 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1422 332 171 521 16 chr11 109835472 109835613 -12008243 - B3A SINE B2 -1 215 4 6 1422 387 60 0 0 chr11 109836057 109836107 -12007749 + (TAA)n Simple_repeat Simple_repeat 1 50 0 6 1422 225 94 0 0 chr11 109836569 109836601 -12007255 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 6 177 354 235 0 0 chr11 109838299 109838367 -12005489 + ORR1C2 LTR MaLR 6 73 -301 6 1423 345 260 121 68 chr11 109838368 109838500 -12005356 + MERVL_2A-int LTR ERVL 1478 1616 -4145 6 1423 1190 225 40 50 chr11 109838502 109838825 -12005031 + ORR1C2 LTR MaLR 65 384 0 6 1423 1513 229 72 36 chr11 109839380 109839864 -12003992 - Lx9 LINE L1 0 7644 7121 6 1423 23 33 0 0 chr11 109839878 109839908 -12003948 + AT_rich Low_complexity Low_complexity 1 30 0 6 1423 213 39 0 0 chr11 109840004 109840030 -12003826 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1423 282 231 51 0 chr11 109840224 109840302 -12003554 - MTEb LTR MaLR 0 379 298 6 1423 283 263 0 48 chr11 109840872 109840996 -12002860 + (CATATA)n Simple_repeat Simple_repeat 6 123 0 6 1423 32 0 0 0 chr11 109841543 109841575 -12002281 + AT_rich Low_complexity Low_complexity 1 32 0 6 1423 993 282 0 0 chr11 109841739 109841945 -12001911 - B3 SINE B2 -8 208 3 6 1423 1758 214 27 6 chr11 109843857 109844186 -11999670 - Lx6 LINE L1 -6 7454 7119 6 1423 2001 172 0 14 chr11 109844227 109844587 -11999269 + Lx6 LINE L1 5411 5761 -1212 6 1423 309 290 44 77 chr11 109844592 109844775 -11999081 - RMER12 LTR ERVK 0 1322 1146 6 1423 1109 90 7 14 chr11 109844775 109844922 -11998934 + B1_Mm SINE Alu 2 147 0 6 1423 6234 60 5 1 chr11 109845235 109846055 -11997801 - RLTR22_Mus LTR ERVK -985 823 1 6 1423 935 218 73 51 chr11 109846065 109846340 -11997516 + Lx6 LINE L1 5767 6047 -1413 6 1423 8481 68 14 7 chr11 109846361 109847377 -11996479 + RLTR13D5 LTR ERVK 1 1023 0 6 1423 684 233 0 0 chr11 109847677 109848165 -11995691 + (TG)n Simple_repeat Simple_repeat 1 488 0 6 1423 768 286 61 43 chr11 109848166 109848396 -11995460 - B4 SINE B4 -2 290 57 6 1423 684 255 119 40 chr11 109848764 109849017 -11994839 + B4A SINE B4 1 273 -19 6 1423 363 23 0 0 chr11 109849050 109849094 -11994762 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1423 459 0 0 0 chr11 109849094 109849144 -11994712 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1423 2080 119 12 51 chr11 109849167 109849502 -11994354 + RLTRETN_Mm LTR ERVK 1 322 0 6 1423 567 220 29 23 chr11 109849899 109850035 -11993821 + B3A SINE B2 1 145 -50 6 1423 233 351 58 39 chr11 109850035 109850053 -11993803 + RSINE1 SINE B4 2 158 -7 6 1423 240 59 0 0 chr11 109850173 109850207 -11993649 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1423 545 284 155 13 chr11 109851466 109851698 -11992158 + Lx8 LINE L1 6812 7076 -397 6 1423 326 219 156 0 chr11 109851732 109851828 -11992028 + Lx8 LINE L1 7275 7385 -88 6 1423 210 91 61 0 chr11 109851889 109851922 -11991934 + GA-rich Low_complexity Low_complexity 4 38 0 6 1423 243 0 0 0 chr11 109851922 109851949 -11991907 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1423 438 88 0 0 chr11 109851998 109852066 -11991790 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1423 233 77 0 49 chr11 109852098 109852139 -11991717 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 6 1423 756 155 0 37 chr11 109852286 109852420 -11991436 - Lx6 LINE L1 -30 7430 7302 6 1423 261 0 0 0 chr11 109852698 109852727 -11991129 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1423 608 184 8 34 chr11 109853149 109853267 -11990589 - B1_Mur3 SINE Alu 0 149 35 6 1423 4870 118 43 4 chr11 109853273 109853977 -11989879 + Lx2 LINE L1 6265 6995 -2 6 1423 468 0 0 0 chr11 109854146 109854198 -11989658 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1423 27 0 0 0 chr11 109854368 109854395 -11989461 + AT_rich Low_complexity Low_complexity 1 27 0 6 1423 390 21 0 0 chr11 109855172 109855219 -11988637 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1423 225 231 0 0 chr11 109856192 109856231 -11987625 + G-rich Low_complexity Low_complexity 1 39 0 6 1423 565 35 23 23 chr11 109856231 109856319 -11987537 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 6 1423 33 0 0 0 chr11 109857672 109857705 -11986151 + AT_rich Low_complexity Low_complexity 1 33 0 6 1423 1598 318 75 16 chr11 109857731 109858410 -11985446 + Lx9 LINE L1 6595 7448 -196 6 1423 264 59 0 0 chr11 109858410 109858444 -11985412 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1423 1205 326 126 20 chr11 109858444 109858559 -11985297 + Lx9 LINE L1 7343 7472 -1 6 1423 816 230 77 39 chr11 109858657 109858865 -11984991 - B3 SINE B2 0 216 1 6 1423 1733 130 73 3 chr11 109858905 109859191 -11984665 - Lx2 LINE L1 -2 6995 6690 6 1423 813 133 25 0 chr11 109859191 109859334 -11984522 - Lx2 LINE L1 -554 6446 6280 6 1423 1383 116 23 11 chr11 109859332 109859478 -11984378 + Lx2B LINE L1 6022 6168 -832 6 1423 183 42 0 0 chr11 109859478 109859502 -11984354 + (G)n Simple_repeat Simple_repeat 1 24 0 6 1423 1383 116 23 11 chr11 109859502 109859616 -11984240 + Lx2B LINE L1 6169 6284 -716 6 1423 8518 36 1 2 chr11 109859619 109861045 -11982811 - L1Md_F2 LINE L1 -3 6579 5154 6 1423 767 285 18 35 chr11 109861050 109861279 -11982577 - B4A SINE B4 -64 228 4 6 1423 247 287 148 0 chr11 109861284 109861406 -11982450 - L1M2 LINE L1 -3317 2826 2687 6 1423 360 298 199 0 chr11 109861723 109861854 -11982002 - RSINE1 SINE B4 -6 159 3 6 1423 361 187 71 53 chr11 109862186 109862299 -11981557 - Lx8 LINE L1 -4 7469 7355 6 1423 230 207 17 0 chr11 109862317 109862375 -11981481 + (CAT)n Simple_repeat Simple_repeat 2 60 0 6 1423 279 178 302 47 chr11 109862495 109862601 -11981255 + Lx8 LINE L1 6822 6954 -519 6 1423 933 184 40 40 chr11 109862631 109862829 -11981027 + Lx8 LINE L1 7041 7238 -235 6 1423 3114 140 192 7 chr11 109862883 109863465 -11980391 - RMER6C LTR ERVK 0 690 1 6 1423 249 238 8 186 chr11 109863569 109863698 -11980158 - Lx8 LINE L1 -345 7128 7023 6 1423 464 305 8 25 chr11 109863812 109863933 -11979923 - PB1D7 SINE Alu 0 120 2 6 1423 2499 125 74 83 chr11 109863941 109864372 -11979484 - RLTR28 LTR ERVL -14 510 86 6 1423 225 0 0 0 chr11 109864372 109864397 -11979459 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 6 1423 2499 125 74 83 chr11 109864397 109864480 -11979376 - RLTR28 LTR ERVL -439 85 2 6 1423 850 276 61 43 chr11 109864938 109865218 -11978638 - B4 SINE B4 -6 286 2 6 1423 233 301 172 47 chr11 109866054 109866246 -11977610 + B3 SINE B2 1 216 0 6 1423 1589 252 36 8 chr11 109866489 109866849 -11977007 + ORR1D2 LTR MaLR 1 370 0 6 1423 297 242 9 92 chr11 109867229 109867338 -11976518 - MurSatRep1 Unknown Unknown -88 2049 1950 6 1423 423 332 65 14 chr11 109867960 109868253 -11975603 + HERV16-int LTR ERVL 552 859 -4137 6 1423 6656 157 9 196 chr11 109868318 109869112 -11974744 + Lx LINE L1 4425 4946 -940 6 1423 1191 38 12 12 chr11 109869112 109869272 -11974584 - L1Md_F2 LINE L1 -2 6580 6421 6 1423 7426 127 13 86 chr11 109869272 109871044 -11972812 + Lx LINE L1 4947 6654 0 6 1423 714 169 355 0 chr11 109871229 109871395 -11972461 - URR1B DNA MER1_type 0 225 1 6 1423 432 0 0 0 chr11 109872432 109872480 -11971376 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1423 779 294 72 0 chr11 109872481 109872702 -11971154 - B4 SINE B4 -48 244 8 7 1423 4889 180 28 31 chr11 109873138 109874345 -11969511 - Lx6 LINE L1 -1313 6147 4933 7 1423 35661 56 1 1 chr11 109874439 109879428 -11964428 + L1Md_F3 LINE L1 641 5586 -297 7 1423 8502 46 2 12 chr11 109879428 109880436 -11963420 + L1Md_F3 LINE L1 5587 6584 0 7 1423 3065 27 0 113 chr11 109880957 109881371 -11962485 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1423 6912 55 84 3 chr11 109881371 109882274 -11961582 + IAPEz-int LTR ERVK 8 983 -5498 7 1423 27973 17 2 2 chr11 109882258 109885358 -11958498 + IAPEz-int LTR ERVK 3384 6481 0 7 1423 3065 27 0 113 chr11 109885358 109885772 -11958084 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1423 417 310 94 6 chr11 109885885 109886044 -11957812 - MTD-int LTR MaLR -1085 173 1 7 1423 1680 261 17 15 chr11 109886044 109886444 -11957412 - MTD LTR MaLR -18 401 1 7 1423 1018 331 65 39 chr11 109886454 109887293 -11956563 + L1MA4 LINE L1 5161 6032 -271 7 1423 244 266 24 60 chr11 109887429 109887513 -11956343 - MLT1A0 LTR MaLR -198 167 87 7 1423 363 136 0 0 chr11 109887739 109887798 -11956058 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1423 183 242 101 43 chr11 109888015 109888084 -11955772 - MIR3 SINE MIR -19 189 117 7 1423 212 175 0 0 chr11 109889228 109889268 -11954588 + A-rich Low_complexity Low_complexity 3 42 0 7 1423 607 315 51 80 chr11 109890765 109890962 -11952894 + B4A SINE B4 2 180 -112 7 1423 279 0 0 0 chr11 109890962 109890993 -11952863 + (CAGCT)n Simple_repeat Simple_repeat 3 33 0 7 1423 607 315 51 80 chr11 109890993 109891071 -11952785 + B4A SINE B4 181 268 -24 7 1423 504 32 0 0 chr11 109891076 109891138 -11952718 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1423 756 275 67 39 chr11 109893236 109893520 -11950336 + B4A SINE B4 1 292 0 7 1423 314 292 7 14 chr11 109893547 109893686 -11950170 + L1MA7 LINE L1 5438 5575 -716 7 1423 337 283 39 19 chr11 109894456 109894611 -11949245 + L1MA7 LINE L1 5710 5867 -424 7 1423 1760 256 10 10 chr11 109894623 109895010 -11948846 - MTD LTR MaLR -14 405 19 7 1423 495 211 70 0 chr11 109895584 109895698 -11948158 - B4 SINE B4 -50 242 121 7 1423 498 304 58 28 chr11 109895880 109896075 -11947781 + RLTR18B LTR ERVK 326 566 -50 7 1423 1023 276 137 9 chr11 109897053 109897485 -11946371 + Lx8 LINE L1 6785 7271 -202 7 1423 487 309 39 0 chr11 109898047 109898228 -11945628 + B3A SINE B2 2 189 -9 7 1423 260 269 178 100 chr11 109898273 109898579 -11945277 + L1M2 LINE L1 3990 4321 -1822 7 1423 477 0 0 0 chr11 109898579 109898632 -11945224 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 7 1423 757 242 70 0 chr11 109898635 109898821 -11945035 - B3 SINE B2 -17 199 1 7 1423 260 269 178 100 chr11 109898821 109898972 -11944884 + L1M2 LINE L1 4322 4487 -1656 7 1423 257 247 0 45 chr11 109899089 109899178 -11944678 + L1MA5A LINE L1 6211 6295 -2 7 1423 553 267 134 22 chr11 109899854 109900130 -11943726 + Charlie1 DNA MER1_type 312 618 -2163 7 1423 364 325 103 60 chr11 109901067 109901434 -11942422 + Charlie1 DNA MER1_type 890 1272 -1509 7 1423 213 132 0 0 chr11 109902642 109902680 -11941176 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7 1423 542 223 36 0 chr11 109902695 109902807 -11941049 - RSINE1 SINE B4 -39 126 11 7 1423 297 322 119 0 chr11 109903747 109903890 -11939966 - B4A SINE B4 0 292 133 7 1423 259 288 13 27 chr11 109904105 109904180 -11939676 + ID4 SINE ID 2 75 -8 7 1423 7866 159 21 37 chr11 109904635 109906621 -11937235 - Lx5 LINE L1 -727 6323 4395 7 1423 1645 212 43 25 chr11 109906619 109906987 -11936869 + Lx5 LINE L1 6299 6673 -377 7 1423 1870 190 84 3 chr11 109906987 109907098 -11936758 + RLTR31_Mm LTR ERVK 1 128 -433 7 1423 537 16 0 0 chr11 109907098 109907160 -11936696 + (GGA)n Simple_repeat Simple_repeat 2 63 0 7 1423 1870 190 84 3 chr11 109907160 109907428 -11936428 + RLTR31_Mm LTR ERVK 129 411 -150 7 1423 1700 233 0 3 chr11 109907429 109907773 -11936083 + Lx5 LINE L1 6676 7018 -32 7 1423 2205 154 26 15 chr11 109907783 109908173 -11935683 - ORR1B1 LTR MaLR 0 394 1 7 1423 6699 174 77 149 chr11 109908173 109909847 -11934009 - ORR1B1-int LTR MaLR 0 1963 464 7 1423 288 0 0 0 chr11 109909847 109909879 -11933977 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1423 378 61 0 0 chr11 109909879 109909927 -11933929 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1423 6699 174 77 149 chr11 109909927 109910367 -11933489 - ORR1B1-int LTR MaLR -1500 463 4 7 1423 1865 168 76 63 chr11 109910371 109910428 -11933428 - ORR1B1 LTR MaLR -8 386 352 7 1423 1082 116 0 0 chr11 109910428 109910575 -11933281 - B1_Mm SINE Alu 0 147 1 7 1423 1865 169 77 63 chr11 109910575 109910916 -11932940 - ORR1B1 LTR MaLR -43 351 1 7 1423 6974 100 22 3 chr11 109910924 109912041 -11931815 + Lx LINE L1 5517 6653 -1 7 1423 28 29 0 0 chr11 109912079 109912114 -11931742 + AT_rich Low_complexity Low_complexity 1 35 0 7 1423 433 351 8 8 chr11 109912381 109912513 -11931343 + B3A SINE B2 1 132 -66 7 1423 258 116 0 0 chr11 109912521 109912564 -11931292 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1423 1267 70 22 0 chr11 109913733 109913918 -11929938 - L1_Mus3 LINE L1 -7 6631 6443 7 1423 441 0 0 0 chr11 109914136 109914185 -11929671 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1423 261 300 158 34 chr11 109914551 109914694 -11929162 + L1MB4 LINE L1 11 171 -6436 7 1423 3586 110 75 5 chr11 109914694 109915253 -11928603 + Lx3A LINE L1 6378 6975 -6 7 1423 261 300 158 34 chr11 109915253 109915375 -11928481 + L1MB4 LINE L1 172 309 -6298 7 1423 307 231 324 0 chr11 109915471 109915579 -11928277 + B1F1 SINE Alu 1 143 -6 7 1423 468 0 0 0 chr11 109915583 109915635 -11928221 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1423 21 0 0 0 chr11 109916469 109916490 -11927366 + AT_rich Low_complexity Low_complexity 1 21 0 7 1423 377 260 86 49 chr11 109916513 109916675 -11927181 - L1MEc LINE L1 -5087 1313 1146 7 1423 312 27 0 0 chr11 109916761 109916798 -11927058 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1423 277 400 11 0 chr11 109918131 109918226 -11925630 - PB1D10 SINE Alu -21 96 1 7 1423 471 283 186 16 chr11 109918955 109919138 -11924718 + RMER15 LTR ERVL 275 488 -87 7 1423 352 183 145 12 chr11 109919252 109919335 -11924521 - HAL1-3A_ME LINE L1 -786 2072 1979 7 1423 577 277 0 9 chr11 109919357 109919470 -11924386 - RSINE1 SINE B4 0 165 54 7 1423 342 268 242 25 chr11 109920088 109920249 -11923607 - B4A SINE B4 -15 277 82 7 1423 444 316 46 10 chr11 109920273 109920468 -11923388 - Lx8 LINE L1 -9 7464 7263 7 1423 354 171 11 109 chr11 109920469 109920561 -11923295 - MTD LTR MaLR -2 417 335 7 1423 293 221 14 14 chr11 109920601 109920670 -11923186 - B4A SINE B4 -206 86 18 7 1423 391 138 0 0 chr11 109921765 109921845 -11922011 - L1Md_F2 LINE L1 -1 6581 6502 7 1423 3602 81 0 6 chr11 109921849 109922356 -11921500 + L1_Mm LINE L1 5078 5581 -302 7 1423 261 0 0 0 chr11 109924047 109924076 -11919780 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1423 527 248 0 0 chr11 109925168 109925277 -11918579 - PB1D10 SINE Alu -4 113 5 7 1423 231 291 39 124 chr11 109925394 109925547 -11918309 + MER88 LTR ERVL 50 189 -275 7 1423 553 301 42 7 chr11 109925855 109925999 -11917857 + B3A SINE B2 1 149 -49 7 1423 234 0 0 0 chr11 109926001 109926027 -11917829 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1423 808 118 7 7 chr11 109926287 109926424 -11917432 + (GAA)n Simple_repeat Simple_repeat 2 138 0 7 1423 683 271 85 68 chr11 109926623 109926820 -11917036 + L1MA6 LINE L1 5408 5600 -700 7 1423 233 29 0 29 chr11 109926820 109926855 -11917001 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 7 1423 683 275 78 67 chr11 109926855 109927101 -11916755 + L1MA6 LINE L1 5600 5825 -475 7 1423 329 302 78 21 chr11 109927101 109927243 -11916613 + RSINE1 SINE B4 3 152 -13 7 1423 520 307 11 0 chr11 109927258 109927434 -11916422 + Lx8 LINE L1 7052 7229 -244 7 1423 1645 157 51 112 chr11 109927639 109928048 -11915808 + ORR1C2 LTR MaLR 1 384 0 7 1423 524 143 10 0 chr11 109928061 109928159 -11915697 + (TA)n Simple_repeat Simple_repeat 1 99 0 7 1423 209 40 38 57 chr11 109928287 109928340 -11915516 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 7 1423 608 69 0 65 chr11 109928959 109929067 -11914789 - L1_Mus3 LINE L1 -3 6635 6535 7 1423 527 0 0 16 chr11 109929155 109929219 -11914637 + (TTA)n Simple_repeat Simple_repeat 1 63 0 7 1423 186 191 0 0 chr11 109929855 109929897 -11913959 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1423 230 315 132 7 chr11 109931308 109931452 -11912404 + MIR SINE MIR 44 205 -57 7 1423 472 186 29 17 chr11 109932177 109932352 -11911504 + GA-rich Low_complexity Low_complexity 3 179 0 7 1423 216 0 0 0 chr11 109933988 109934012 -11909844 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1423 1424 273 69 34 chr11 109934061 109934268 -11909588 + Lx7 LINE L1 6836 7045 -651 7 1423 1057 138 153 0 chr11 109934268 109934464 -11909392 + URR1A DNA MER1_type 1 226 0 7 1423 1424 273 69 34 chr11 109934464 109934780 -11909076 + Lx7 LINE L1 7046 7377 -319 7 1423 441 293 33 0 chr11 109935193 109935343 -11908513 + Lx8 LINE L1 6963 7117 -356 7 1423 208 225 0 0 chr11 109935594 109935634 -11908222 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1423 415 322 105 19 chr11 109935636 109935902 -11907954 + L1MEc LINE L1 1410 1698 -4702 7 1423 225 94 0 0 chr11 109935913 109935945 -11907911 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1423 269 303 100 46 chr11 109936135 109936505 -11907351 + L1MA8 LINE L1 5902 6291 0 7 1423 198 0 0 0 chr11 109937053 109937075 -11906781 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 1423 7372 82 9 11 chr11 109937237 109938307 -11905549 - Lx LINE L1 0 6654 5587 7 1423 600 264 51 67 chr11 109938501 109938696 -11905160 + B3A SINE B2 1 192 -6 7 1423 234 171 0 41 chr11 109939091 109939164 -11904692 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1423 3607 61 4 12 chr11 109939305 109939785 -11904071 + L1_Mus3 LINE L1 6159 6634 -4 7 1423 207 0 0 0 chr11 109939807 109939830 -11904026 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1423 562 345 32 113 chr11 109941148 109941458 -11902398 + B4 SINE B4 6 290 -2 7 1423 326 305 69 10 chr11 109941908 109942142 -11901714 + L1MC2 LINE L1 5949 6195 -138 7 1423 2012 120 57 37 chr11 109942167 109942531 -11901325 - RLTR31_Mur LTR ERVK -231 353 14 7 1423 3637 67 21 2 chr11 109942531 109942997 -11900859 + MT2C_Mm LTR ERVL 1 475 0 7 1423 2012 96 54 27 chr11 109942997 109943011 -11900845 - RLTR31_Mur LTR ERVK -540 13 1 7 1423 644 189 19 12 chr11 109943012 109943173 -11900683 - RMER3D-int LTR ERVK -1 2841 2680 7 1423 855 221 115 5 chr11 109943404 109943595 -11900261 + B3 SINE B2 1 212 -4 7 1423 351 243 24 82 chr11 109943622 109943760 -11900096 - MIRb SINE MIR -77 191 62 7 1423 752 184 249 11 chr11 109943941 109944122 -11899734 + URR1B DNA MER1_type 1 224 -1 7 1423 863 270 38 24 chr11 109944352 109944561 -11899295 - ID_B1 SINE B4 -5 219 8 7 1423 181 362 43 0 chr11 109945213 109945282 -11898574 + L2b LINE L2 3221 3292 -83 7 1423 232 338 7 87 chr11 109945783 109945853 -11898003 - BC1_Mm scRNA scRNA -13 139 77 8 1423 219 88 0 0 chr11 109945853 109945887 -11897969 + (TTA)n Simple_repeat Simple_repeat 3 36 0 8 1423 233 338 7 87 chr11 109945887 109945965 -11897891 - ID2 SINE ID -76 76 3 8 1423 423 259 0 0 chr11 109946583 109946664 -11897192 - B1F SINE Alu -23 126 46 8 1423 261 0 0 0 chr11 109946912 109946941 -11896915 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1423 780 270 150 53 chr11 109947060 109947326 -11896530 - B4 SINE B4 0 292 1 8 1423 991 250 237 12 chr11 109947371 109947713 -11896143 - MTD LTR MaLR -14 405 1 8 1423 1322 228 127 21 chr11 109948015 109948346 -11895510 - ORR1D2 LTR MaLR -4 366 1 8 1423 2279 181 60 21 chr11 109948356 109948837 -11895019 + RLTR16 LTR ERVK 6 505 0 8 1423 350 230 107 0 chr11 109950484 109950577 -11893279 + B1F1 SINE Alu 10 108 -9 8 1423 252 0 0 0 chr11 109950593 109950621 -11893235 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1423 564 296 78 100 chr11 109950758 109951039 -11892817 + B4A SINE B4 1 275 -17 8 1423 333 0 0 0 chr11 109951060 109951097 -11892759 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1423 351 0 0 0 chr11 109951097 109951135 -11892721 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1423 305 343 78 0 chr11 109951576 109951678 -11892178 - PB1D10 SINE Alu -6 111 2 8 1423 538 175 31 31 chr11 109951900 109952017 -11891839 + B2_Mm2 SINE B2 63 179 -16 8 1423 639 39 0 0 chr11 109952017 109952095 -11891761 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 8 1423 538 175 31 31 chr11 109952095 109952107 -11891749 + B2_Mm2 SINE B2 180 191 -4 8 1423 988 159 22 22 chr11 109952287 109952467 -11891389 + B2_Mm2 SINE B2 1 180 -15 8 1423 528 16 0 0 chr11 109952469 109952530 -11891326 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 1423 408 20 0 0 chr11 109954443 109954492 -11889364 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1423 237 33 0 0 chr11 109954744 109954774 -11889082 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 8 1423 239 318 111 70 chr11 109954834 109955105 -11888751 - MLT2D LTR ERVL -39 425 144 8 1423 598 242 24 0 chr11 109955133 109955257 -11888599 + RSINE1 SINE B4 3 129 -36 8 1423 23 0 0 0 chr11 109955301 109955324 -11888532 + AT_rich Low_complexity Low_complexity 1 23 0 8 1423 687 188 23 0 chr11 109955324 109955452 -11888404 - MLT2D LTR ERVL -283 131 1 8 1423 447 19 0 0 chr11 109956168 109956220 -11887636 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 8 1423 270 0 0 0 chr11 109956675 109956705 -11887151 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1423 324 0 0 0 chr11 109957559 109957595 -11886261 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 8 1423 1425 148 256 9 chr11 109957794 109957808 -11886048 - RMER17C LTR ERVK 0 410 389 8 1423 654 13 0 0 chr11 109957808 109957883 -11885973 + (GAA)n Simple_repeat Simple_repeat 2 76 0 8 1423 1425 148 256 9 chr11 109957883 109958035 -11885821 - RMER17C LTR ERVK -22 388 190 8 1423 599 48 0 12 chr11 109958035 109958119 -11885737 + (GA)n Simple_repeat Simple_repeat 1 83 0 8 1423 1425 148 256 9 chr11 109958119 109958279 -11885577 - RMER17C LTR ERVK -221 189 3 8 1423 234 0 0 0 chr11 109958904 109958930 -11884926 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1423 991 122 96 32 chr11 109959285 109959472 -11884384 - URR1A DNA MER1_type 0 226 28 8 1423 375 229 28 7 chr11 109959932 109960073 -11883783 + (TA)n Simple_repeat Simple_repeat 1 144 0 8 1423 237 161 12 58 chr11 109960016 109960102 -11883754 + (TTTA)n Simple_repeat Simple_repeat 2 83 0 8 1423 3760 86 2 0 chr11 109960240 109960731 -11883125 + L1VL4 LINE L1 191 682 -5620 8 1423 227 279 15 0 chr11 109960793 109960861 -11882995 - Lx8 LINE L1 -199 7274 7206 8 1423 673 191 21 77 chr11 109961168 109961357 -11882499 + RLTR20D LTR ERVK 23 250 -313 8 1423 849 282 110 17 chr11 109961371 109961681 -11882175 - MTD LTR MaLR -13 408 75 8 1423 480 288 84 28 chr11 109961664 109961807 -11882049 + B3 SINE B2 66 216 0 8 1423 278 274 14 0 chr11 109961838 109961911 -11881945 - MTD LTR MaLR -344 75 2 8 1423 189 0 0 0 chr11 109962105 109962126 -11881730 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 8 1423 536 287 14 34 chr11 109962152 109962300 -11881556 - RSINE1 SINE B4 -18 147 3 8 1423 646 72 182 8 chr11 109964298 109964424 -11879432 - Lx4A LINE L1 0 7058 6911 8 1423 419 94 0 59 chr11 109964424 109964492 -11879364 + Lx4A LINE L1 6820 6883 -175 8 1423 501 17 0 0 chr11 109965667 109965725 -11878131 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1423 227 320 87 93 chr11 109965731 109965903 -11877953 + ORR1D2 LTR MaLR 102 272 -98 8 1423 1243 309 106 53 chr11 109965976 109966540 -11877316 + MTE-int LTR MaLR 3 596 -984 8 1423 421 151 0 14 chr11 109966559 109966633 -11877223 + RMER17D2 LTR ERVK 1 73 -736 8 1423 1079 118 23 17 chr11 109966647 109966820 -11877036 + B2_Mm1t SINE B2 20 193 0 8 1423 2318 301 73 46 chr11 109966829 109967706 -11876150 + MTE-int LTR MaLR 603 1503 -77 8 1424 1778 195 31 9 chr11 109969428 109969749 -11874107 - Lx4A LINE L1 -2 7056 6729 8 1424 824 87 115 7 chr11 109970363 109970502 -11873354 + URR1A DNA MER1_type 71 224 -2 8 1424 842 176 7 21 chr11 109970686 109970831 -11873025 + B1_Mur4 SINE Alu 1 143 -7 8 1424 212 59 29 0 chr11 109970835 109970869 -11872987 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8 1424 243 238 79 0 chr11 109971012 109971075 -11872781 + ORR1D2 LTR MaLR 248 315 -55 8 1424 574 191 7 7 chr11 109971088 109971202 -11872654 + GA-rich Low_complexity Low_complexity 4 118 0 8 1424 1026 122 0 16 chr11 109971202 109971385 -11872471 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1424 574 191 7 7 chr11 109971385 109971407 -11872449 + polypurine Low_complexity Low_complexity 119 140 0 8 1424 452 323 40 65 chr11 109971877 109972125 -11871731 + Lx9 LINE L1 7225 7466 -178 8 1424 238 325 0 11 chr11 109972131 109972218 -11871638 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 8 1424 429 244 0 11 chr11 109972653 109972740 -11871116 + MER20 DNA MER1_type 66 151 -68 8 1424 297 0 0 0 chr11 109974226 109974259 -11869597 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1424 189 348 80 22 chr11 109974693 109974710 -11869146 - MIRb SINE MIR -60 208 189 8 1424 654 49 0 0 chr11 109974710 109974792 -11869064 + (TC)n Simple_repeat Simple_repeat 1 82 0 8 1424 212 350 79 20 chr11 109974792 109974931 -11868925 - MIR SINE MIR -80 188 33 8 1424 532 304 7 7 chr11 109974972 109975108 -11868748 - B1F SINE Alu -12 137 2 8 1424 406 231 26 0 chr11 109975177 109975255 -11868601 + ID4_ SINE ID 2 81 -2 8 1424 666 225 0 0 chr11 109975931 109976109 -11867747 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 1424 312 182 0 35 chr11 109976114 109976171 -11867685 + HAL1-3A_ME LINE L1 1976 2030 -828 8 1424 758 261 17 83 chr11 109976232 109976462 -11867394 + B3 SINE B2 2 216 0 8 1424 282 56 0 0 chr11 109976548 109976584 -11867272 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 8 1424 1570 191 82 74 chr11 109977481 109977860 -11865996 + ORR1C2 LTR MaLR 1 382 -2 8 1424 818 215 14 0 chr11 109978672 109978816 -11865040 + RSINE1 SINE B4 3 148 -17 8 1424 459 148 0 0 chr11 109978836 109978924 -11864932 + (GA)n Simple_repeat Simple_repeat 1 88 0 8 1424 1285 62 6 11 chr11 109978926 109979107 -11864749 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1424 383 336 129 59 chr11 109979981 109980618 -11863238 + L2 LINE L2 1404 2107 -1312 8 1424 2257 98 58 9 chr11 109980618 109980948 -11862908 - Lx3_Mus LINE L1 -2 7007 6662 8 1424 383 336 129 59 chr11 109980948 109981245 -11862611 + L2 LINE L2 2108 2404 -1015 8 1424 410 232 63 50 chr11 109981437 109981596 -11862260 + RLTR43A LTR ERVK 201 361 -3 8 1424 1921 37 0 0 chr11 109982442 109982660 -11861196 + L1Md_F2 LINE L1 5369 5586 -297 8 1424 8140 67 4 3 chr11 109982661 109983648 -11860208 + L1Md_F2 LINE L1 5588 6575 -7 8 1424 282 56 0 0 chr11 109983667 109983703 -11860153 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 8 1424 1022 244 5 32 chr11 109983777 109983997 -11859859 - B3 SINE B2 -2 214 1 8 1424 11506 88 23 74 chr11 109984376 109986322 -11857534 + RLTR22_Mur LTR ERVK 2 1848 0 8 1424 275 241 32 65 chr11 109986325 109986449 -11857407 - Lx8 LINE L1 -1 7472 7353 8 1424 312 27 0 0 chr11 109986569 109986606 -11857250 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1424 262 254 34 0 chr11 109986613 109986672 -11857184 - ID4 SINE ID -17 66 6 8 1424 1456 93 0 25 chr11 109986697 109986896 -11856960 - B2_Mm2 SINE B2 0 195 2 8 1424 21 57 0 0 chr11 109986966 109987001 -11856855 + AT_rich Low_complexity Low_complexity 1 35 0 8 1424 669 305 76 18 chr11 109987015 109987443 -11856413 - L1MC1 LINE L1 -1645 6140 5674 8 1424 2439 68 3 115 chr11 109987573 109987939 -11855917 + ORR1A2 LTR MaLR 3 327 0 8 1424 771 290 20 0 chr11 109988364 109988564 -11855292 + B3 SINE B2 1 204 -12 8 1424 3419 121 42 2 chr11 109988861 109989383 -11854473 - Lx2 LINE L1 -40 6957 6415 8 1424 469 130 0 0 chr11 109989381 109989450 -11854406 + Lx2 LINE L1 6397 6465 -532 8 1424 333 47 0 0 chr11 109989492 109989535 -11854321 + (ATG)n Simple_repeat Simple_repeat 2 44 0 8 1424 685 282 211 24 chr11 109989822 109990196 -11853660 + Lx8 LINE L1 6844 7287 -186 8 1424 2061 187 137 14 chr11 109990401 109990884 -11852972 + Lx2B LINE L1 6458 6999 -1 8 1424 501 62 0 0 chr11 109991552 109991617 -11852239 + (TC)n Simple_repeat Simple_repeat 1 65 0 8 1424 23 0 0 0 chr11 109992364 109992387 -11851469 + AT_rich Low_complexity Low_complexity 1 23 0 8 1424 438 248 36 45 chr11 109992463 109992573 -11851283 + B3 SINE B2 99 207 -9 8 1424 933 212 246 39 chr11 109993615 109993900 -11849956 + Lx9 LINE L1 6598 6941 -703 8 1424 325 327 40 0 chr11 109993975 109994076 -11849780 - PB1D9 SINE Alu -2 118 14 8 1424 261 57 0 0 chr11 109994590 109994625 -11849231 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1424 488 218 10 10 chr11 109994628 109994730 -11849126 - RSINE1 SINE B4 -60 105 4 8 1424 287 210 24 24 chr11 109994732 109994815 -11849041 + L1MC5 LINE L1 7698 7780 -181 8 1424 22 0 0 0 chr11 109995384 109995406 -11848450 + AT_rich Low_complexity Low_complexity 1 22 0 8 1424 3118 107 0 24 chr11 109995772 109996232 -11847624 + MT2B LTR ERVL 153 601 0 8 1424 248 333 13 0 chr11 109997005 109997083 -11846773 + ID4 SINE ID 5 83 0 8 1424 598 242 8 0 chr11 109997761 109997885 -11845971 - ID_B1 SINE B4 -2 222 98 9 1424 620 306 115 0 chr11 109997965 109998243 -11845613 + Lx8 LINE L1 6714 7023 -450 9 1424 950 241 56 44 chr11 109998599 109998938 -11844918 + RLTR15 LTR ERVK 1 343 -16 9 1424 392 286 18 18 chr11 109999002 109999105 -11844751 + MLT2C1 LTR ERVL 402 506 -57 9 1424 470 70 14 0 chr11 109999105 109999176 -11844680 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 9 1424 506 227 102 0 chr11 110000199 110000327 -11843529 + B1_Mur2 SINE Alu 2 142 -7 1 1424 1032 207 30 5 chr11 110001238 110001437 -11842419 + B3 SINE B2 5 208 -8 2 1424 516 272 86 11 chr11 110001462 110001492 -11842364 - B3A SINE B2 -10 188 157 3 1424 414 57 0 0 chr11 110001492 110001545 -11842311 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1424 516 272 86 11 chr11 110001545 110001689 -11842167 - B3A SINE B2 -42 156 1 3 1424 244 336 98 25 chr11 110002700 110002822 -11841034 - MIR SINE MIR -47 215 85 5 1424 2314 201 26 41 chr11 110003154 110003689 -11840167 + RLTR31_Mur LTR ERVK 1 527 -26 6 1424 780 253 23 6 chr11 110004659 110004834 -11839022 + B3A SINE B2 1 178 -20 7 1424 284 197 279 0 chr11 110006568 110006648 -11837208 - PB1D7 SINE Alu -11 109 8 8 1424 695 285 74 74 chr11 110007150 110007502 -11836354 + Lx8 LINE L1 7120 7471 -2 9 1424 688 118 38 17 chr11 110007618 110007858 -11835998 + (CAGAGA)n Simple_repeat Simple_repeat 1 244 0 1 1424 222 37 0 0 chr11 110008111 110008138 -11835718 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1424 202 61 0 57 chr11 110008657 110008692 -11835164 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1424 597 254 36 0 chr11 110009140 110009278 -11834578 + B1F SINE Alu 7 149 0 1 1424 326 185 148 37 chr11 110010460 110010595 -11833261 + Lx6 LINE L1 5722 5871 -1589 1 1424 1631 287 74 32 chr11 110011074 110011128 -11832728 + Lx8 LINE L1 6197 6248 -1225 1 1424 2241 110 16 0 chr11 110011128 110011446 -11832410 + ORR1A2 LTR MaLR 1 323 -4 1 1424 1631 287 74 32 chr11 110011446 110011984 -11831872 + Lx8 LINE L1 6249 6814 -659 1 1424 1344 188 51 20 chr11 110011987 110012242 -11831614 - MTD LTR MaLR -5 414 152 1 1424 1573 282 82 5 chr11 110012272 110012882 -11830974 + Lx8 LINE L1 6809 7465 -8 1 1424 1160 179 4 47 chr11 110012967 110013202 -11830654 + URR1B DNA MER1_type 1 225 0 1 1424 34 0 0 0 chr11 110013694 110013728 -11830128 + AT_rich Low_complexity Low_complexity 1 34 0 1 1424 2583 257 105 34 chr11 110013998 110014943 -11828913 + Lx9 LINE L1 6378 7389 -255 2 1424 417 20 0 0 chr11 110014954 110015004 -11828852 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1424 770 163 63 14 chr11 110015133 110015276 -11828580 + B1_Mur4 SINE Alu 1 150 0 2 1424 21 36 0 0 chr11 110015279 110015307 -11828549 + AT_rich Low_complexity Low_complexity 1 28 0 2 1424 468 261 0 67 chr11 110015514 110015633 -11828223 + RSINE1 SINE B4 55 165 0 2 1424 218 163 41 0 chr11 110016405 110016454 -11827402 + GA-rich Low_complexity Low_complexity 2 52 0 2 1424 975 238 158 39 chr11 110016834 110017189 -11826667 + MTD LTR MaLR 8 404 -15 2 1424 606 247 65 0 chr11 110018290 110018460 -11825396 - B3A SINE B2 -17 181 1 2 1424 204 40 0 0 chr11 110018888 110018913 -11824943 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2 1424 211 261 115 85 chr11 110018943 110019073 -11824783 - MIR SINE MIR -128 134 1 2 1424 478 0 0 31 chr11 110020133 110020197 -11823659 + (TAA)n Simple_repeat Simple_repeat 2 63 0 3 1424 908 111 0 7 chr11 110020741 110020886 -11822970 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 3 1424 476 294 87 39 chr11 110020989 110021274 -11822582 + L1MA4 LINE L1 5577 5873 -427 3 1424 279 0 0 0 chr11 110021274 110021305 -11822551 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1424 476 294 87 39 chr11 110021305 110021352 -11822504 + L1MA4 LINE L1 5874 5925 -375 3 1424 821 228 78 0 chr11 110022081 110022274 -11821582 - B3 SINE B2 -6 210 3 3 1424 225 229 30 50 chr11 110022579 110022680 -11821176 - L1MC5 LINE L1 -539 7422 7324 3 1424 992 135 0 12 chr11 110022847 110023019 -11820837 + (TTC)n Simple_repeat Simple_repeat 3 172 0 3 1424 24 32 0 0 chr11 110023057 110023088 -11820768 + AT_rich Low_complexity Low_complexity 1 31 0 3 1424 22 35 0 0 chr11 110023182 110023211 -11820645 + AT_rich Low_complexity Low_complexity 1 29 0 3 1424 2830 35 0 55 chr11 110023812 110024178 -11819678 - ORR1A1 LTR MaLR 0 346 1 3 1424 638 267 72 10 chr11 110024858 110025051 -11818805 - B3 SINE B2 -11 205 1 4 1424 1163 111 0 17 chr11 110025376 110025551 -11818305 + B2_Mm2 SINE B2 1 172 -23 4 1424 261 0 0 0 chr11 110026794 110026823 -11817033 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1424 405 0 0 0 chr11 110028904 110028949 -11814907 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1424 748 234 41 103 chr11 110029939 110030182 -11813674 + B4 SINE B4 5 232 -60 4 1424 235 224 0 20 chr11 110030287 110030337 -11813519 + GA-rich Low_complexity Low_complexity 1 49 0 4 1424 3188 29 56 0 chr11 110030629 110031004 -11812852 + MTA_Mm LTR MaLR 1 396 0 4 1424 2864 67 8 3 chr11 110031361 110031750 -11812106 - L1_Mus3 LINE L1 -2 6636 6246 4 1424 5019 37 0 0 chr11 110031762 110032352 -11811504 + L1Md_T LINE L1 5993 6582 0 4 1424 502 244 105 32 chr11 110032364 110032539 -11811317 + B3 SINE B2 11 216 0 4 1424 655 177 3 54 chr11 110032566 110032737 -11811119 + ORR1B1 LTR MaLR 1 141 -253 5 1424 590 172 108 15 chr11 110032746 110032876 -11810980 + ORR1B1 LTR MaLR 62 203 -191 5 1424 897 164 205 0 chr11 110033223 110033394 -11810462 + B3 SINE B2 1 206 -10 5 1424 262 159 191 0 chr11 110033439 110033502 -11810354 + B3 SINE B2 1 75 -141 5 1424 218 284 45 0 chr11 110033780 110033847 -11810009 - B4A SINE B4 -141 151 82 5 1424 1216 105 22 0 chr11 110033961 110034142 -11809714 + B2_Mm2 SINE B2 2 186 -9 5 1424 570 337 13 69 chr11 110034301 110034604 -11809252 - Lx7 LINE L1 -1211 6485 6200 5 1424 378 0 0 0 chr11 110034608 110034650 -11809206 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1424 784 166 34 7 chr11 110035154 110035300 -11808556 - MTD LTR MaLR -5 414 265 5 1424 897 50 8 8 chr11 110035273 110035393 -11808463 + B1_Mus2 SINE Alu 27 146 -1 5 1424 1057 188 0 0 chr11 110035417 110035593 -11808263 - MTD LTR MaLR -121 298 123 5 1424 354 23 0 0 chr11 110035753 110035796 -11808060 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1424 269 230 23 62 chr11 110036000 110036176 -11807680 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 6 1424 24 49 0 47 chr11 110037584 110037648 -11806208 + AT_rich Low_complexity Low_complexity 1 61 0 6 1424 280 65 87 0 chr11 110037757 110037803 -11806053 - MTB_Mm LTR MaLR 0 407 358 6 1424 1676 56 0 0 chr11 110037801 110038016 -11805840 - MTB_Mm LTR MaLR -192 215 1 6 1424 25 0 0 0 chr11 110038611 110038636 -11805220 + AT_rich Low_complexity Low_complexity 1 25 0 6 1424 234 365 54 20 chr11 110039083 110039231 -11804625 - L2a LINE L2 -31 3395 3243 6 1424 252 186 0 0 chr11 110039246 110039305 -11804551 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1424 1074 38 76 0 chr11 110040253 110040385 -11803471 + B1_Mm SINE Alu 1 142 -5 6 1424 330 26 0 0 chr11 110040388 110040427 -11803429 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1424 239 0 32 0 chr11 110040581 110040612 -11803244 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1424 909 79 0 0 chr11 110041154 110041281 -11802575 + (CA)n Simple_repeat Simple_repeat 2 128 0 6 1424 1302 72 71 22 chr11 110042191 110042375 -11801481 + B2_Mm2 SINE B2 1 193 -2 7 1424 382 329 86 73 chr11 110042981 110043283 -11800573 + ORR1E LTR MaLR 8 313 -46 7 1424 2578 77 0 0 chr11 110043598 110043925 -11799931 + ORR1A2 LTR MaLR 1 327 0 7 1424 26 64 0 0 chr11 110044579 110044626 -11799230 + AT_rich Low_complexity Low_complexity 1 47 0 7 1424 3149 74 7 0 chr11 110044754 110045160 -11798696 - L1_Mus1 LINE L1 0 6567 6159 7 1424 378 42 0 0 chr11 110046912 110046960 -11796896 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1424 422 310 23 23 chr11 110047055 110047187 -11796669 + B1F SINE Alu 18 149 0 7 1424 298 350 12 0 chr11 110047189 110047269 -11796587 + ID SINE ID 2 82 -142 7 1424 7062 83 15 24 chr11 110047269 110048296 -11795560 + Lx3C LINE L1 5957 6973 -3 7 1424 260 302 84 38 chr11 110048296 110048360 -11795496 + BC1_Mm scRNA scRNA 81 152 0 7 1424 221 350 167 11 chr11 110050199 110050462 -11793394 + L2b LINE L2 2586 2889 -530 8 1424 1575 180 67 25 chr11 110050633 110050992 -11792864 + ORR1D1 LTR MaLR 1 374 0 8 1424 182 294 122 56 chr11 110051042 110051132 -11792724 + L2b LINE L2 3253 3348 -27 8 1424 180 250 38 19 chr11 110051874 110051927 -11791929 + L2 LINE L2 501 554 -2865 8 1424 252 0 0 0 chr11 110052092 110052120 -11791736 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1424 279 268 0 0 chr11 110053344 110053415 -11790441 - L1MA4 LINE L1 -48 6252 6182 8 1424 1170 85 0 0 chr11 110053468 110053645 -11790211 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1424 332 329 52 32 chr11 110053755 110054107 -11789749 - L1MA4 LINE L1 -305 5995 5631 8 1424 1235 85 45 0 chr11 110054341 110054518 -11789338 - B2_Mm1t SINE B2 -8 185 1 8 1424 243 256 37 0 chr11 110054521 110054603 -11789253 - L1MA4 LINE L1 -817 5326 5242 8 1424 2973 232 35 11 chr11 110054725 110055521 -11788335 + Lx9 LINE L1 6824 7638 -6 8 1424 288 0 0 0 chr11 110057044 110057076 -11786780 + (TA)n Simple_repeat Simple_repeat 2 33 0 8 1424 243 125 0 0 chr11 110057079 110057119 -11786737 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 8 1424 210 150 0 0 chr11 110057123 110057163 -11786693 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1424 258 95 0 0 chr11 110057165 110057207 -11786649 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 9 1424 286 286 0 0 chr11 110057334 110057397 -11786459 - RMER30 DNA MER1_type -5 197 135 9 1424 280 319 29 0 chr11 110057336 110057405 -11786451 + Charlie12 DNA MER1_type 7 77 -2796 9 1424 623 278 83 0 chr11 110058573 110058742 -11785114 - ID_B1 SINE B4 -4 220 38 9 1424 1451 232 45 68 chr11 110058779 110059251 -11784605 + RMER6B LTR ERVK 1 461 0 9 1424 316 301 123 91 chr11 110060247 110060663 -11783193 + RMER20A LTR ERVK 51 479 -37 9 1424 2397 168 66 12 chr11 110060723 110061211 -11782645 + RLTR12B LTR ERVK 1 514 -14 9 1424 41 48 0 0 chr11 110062016 110062078 -11781778 + AT_rich Low_complexity Low_complexity 1 62 0 9 1424 441 287 96 118 chr11 110062161 110062422 -11781434 + Lx9 LINE L1 7139 7360 -284 9 1424 180 0 0 0 chr11 110062422 110062442 -11781414 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1424 450 0 0 0 chr11 110062442 110062491 -11781365 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1424 441 287 96 118 chr11 110062491 110062718 -11781138 + Lx9 LINE L1 7361 7616 -28 9 1424 1261 89 0 32 chr11 110062815 110062974 -11780882 + B2_Mm2 SINE B2 2 158 -37 1 1424 342 0 0 0 chr11 110062974 110063012 -11780844 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 1424 1261 89 0 32 chr11 110063012 110063038 -11780818 + B2_Mm2 SINE B2 159 181 -14 1 1424 261 139 0 0 chr11 110063047 110063090 -11780766 + (GGA)n Simple_repeat Simple_repeat 3 45 0 1 1424 715 102 212 0 chr11 110063456 110063574 -11780282 + B1_Mus1 SINE Alu 2 144 -4 1 1424 863 284 46 48 chr11 110063870 110064303 -11779553 + L1MB2 LINE L1 5631 6062 -109 1 1424 653 232 63 54 chr11 110064353 110064558 -11779298 + B3 SINE B2 4 210 -6 1 1424 227 308 0 49 chr11 110064627 110064709 -11779147 - ID4 SINE ID -5 78 1 1 1424 420 157 60 12 chr11 110064841 110065009 -11778847 + (TA)n Simple_repeat Simple_repeat 2 177 0 1 1424 736 299 69 47 chr11 110065399 110065576 -11778280 - L1_Mur3 LINE L1 -770 5077 4897 1 1424 1631 21 16 0 chr11 110065576 110065765 -11778091 - B2_Mm1t SINE B2 0 193 2 1 1424 764 306 47 28 chr11 110065765 110066236 -11777620 - L1M2 LINE L1 -1190 4953 4474 1 1424 231 284 113 30 chr11 110066512 110066597 -11777259 - L1_Mur3 LINE L1 -1436 4444 4356 1 1424 845 179 0 20 chr11 110066597 110066745 -11777111 + B1_Mur4 SINE Alu 1 145 -5 1 1424 231 284 113 30 chr11 110066745 110066758 -11777098 - L1_Mur3 LINE L1 -1525 4355 4345 1 1424 752 193 51 23 chr11 110066758 110066933 -11776923 - B2_Mm2 SINE B2 -14 181 2 1 1424 231 284 113 30 chr11 110066933 110067036 -11776820 - L1_Mur3 LINE L1 -1536 4344 4225 1 1424 404 270 60 90 chr11 110067088 110067255 -11776601 - RSINE1 SINE B4 0 165 4 1 1424 950 276 20 7 chr11 110067258 110067564 -11776292 - L1_Mur3 LINE L1 -1659 4221 3912 1 1424 1745 145 34 12 chr11 110067569 110067897 -11775959 - Lx9 LINE L1 -1 7643 7309 1 1424 881 61 0 0 chr11 110067907 110068021 -11775835 - B2_Mm1a SINE B2 -2 191 78 1 1424 290 167 0 0 chr11 110068035 110068083 -11775773 - Lx9 LINE L1 -357 7287 7240 1 1424 854 330 32 18 chr11 110068089 110068589 -11775267 - L1_Mur3 LINE L1 -1972 3908 3402 1 1424 633 289 28 32 chr11 110068625 110068872 -11774984 + L1M2 LINE L1 5412 5657 -643 1 1424 1112 312 99 16 chr11 110068899 110069221 -11774635 + Lx8 LINE L1 6498 6837 -636 1 1424 321 26 0 0 chr11 110069221 110069259 -11774597 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1424 1112 312 99 16 chr11 110069259 110069489 -11774367 + Lx8 LINE L1 6838 7095 -378 1 1424 644 67 11 0 chr11 110069780 110069870 -11773986 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 1424 228 239 72 40 chr11 110070265 110070349 -11773507 + MIR SINE MIR 70 161 -47 1 1424 23 68 0 0 chr11 110071819 110071863 -11771993 + AT_rich Low_complexity Low_complexity 1 44 0 1 1424 216 97 0 0 chr11 110072232 110072263 -11771593 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 1 1424 469 225 58 7 chr11 110072284 110072423 -11771433 - Lx5 LINE L1 -3 7047 6902 1 1424 432 0 0 0 chr11 110072696 110072744 -11771112 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1424 26 82 0 0 chr11 110073866 110073927 -11769929 + AT_rich Low_complexity Low_complexity 1 61 0 1 1424 564 57 78 7 chr11 110074003 110074144 -11769712 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 1424 225 376 24 16 chr11 110074319 110074446 -11769410 + MIRb SINE MIR 23 150 -118 1 1424 902 97 15 0 chr11 110074699 110074833 -11769023 + L1_Mus2 LINE L1 6429 6564 -2 1 1424 872 61 0 0 chr11 110074952 110075066 -11768790 + B1_Mus1 SINE Alu 35 148 0 1 1424 201 39 0 0 chr11 110075066 110075092 -11768764 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1424 198 128 0 0 chr11 110075175 110075214 -11768642 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1424 1118 43 7 0 chr11 110075216 110075356 -11768500 - B1_Mus1 SINE Alu 0 148 8 1 1424 337 353 103 28 chr11 110075719 110076010 -11767846 + L2 LINE L2 1448 1760 -1659 1 1424 229 280 80 0 chr11 110076146 110076221 -11767635 + L2 LINE L2 1960 2040 -1379 1 1424 206 163 0 58 chr11 110076374 110076426 -11767430 + T-rich Low_complexity Low_complexity 2 50 0 1 1424 375 60 0 0 chr11 110076515 110076565 -11767291 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1424 187 364 0 15 chr11 110077026 110077093 -11766763 + L2 LINE L2 2823 2888 -531 1 1424 327 105 0 0 chr11 110078019 110078076 -11765780 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1424 537 55 0 0 chr11 110078193 110078266 -11765590 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1424 972 106 0 0 chr11 110078382 110078552 -11765304 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 1424 1007 68 76 0 chr11 110078894 110079026 -11764830 - B1_Mus2 SINE Alu -5 142 1 1 1424 764 262 16 0 chr11 110079288 110079475 -11764381 + B3A SINE B2 2 191 -7 1 1424 24 67 0 0 chr11 110081734 110081779 -11762077 + AT_rich Low_complexity Low_complexity 1 45 0 1 1424 681 222 7 22 chr11 110081805 110081943 -11761913 + B1_Mur2 SINE Alu 2 137 -12 1 1424 216 0 0 0 chr11 110081943 110081967 -11761889 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1424 348 302 18 42 chr11 110082117 110082283 -11761573 + RSINE1 SINE B4 3 164 -1 1 1424 222 275 127 64 chr11 110082616 110082739 -11761117 + MIRb SINE MIR 123 251 -11 1 1424 210 180 0 0 chr11 110083228 110083289 -11760567 + C-rich Low_complexity Low_complexity 97 157 0 1 1424 267 31 0 0 chr11 110083398 110083430 -11760426 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1424 503 248 8 30 chr11 110083884 110084017 -11759839 - B1_Mur1 SINE Alu -3 146 17 1 1424 545 157 10 0 chr11 110084021 110084123 -11759733 + L1_Mur3 LINE L1 5140 5242 -638 1 1424 4313 218 42 32 chr11 110084118 110085195 -11758661 + Lx6 LINE L1 6053 7139 -321 1 1424 32818 61 9 4 chr11 110085281 110090515 -11753341 + L1Md_F3 LINE L1 369 5586 -297 1 1424 8370 36 0 3 chr11 110090515 110091516 -11752340 + L1Md_F3 LINE L1 5587 6584 0 1 1424 212 0 36 0 chr11 110092156 110092184 -11751672 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1424 1028 55 0 0 chr11 110092184 110092311 -11751545 - B1_Mm SINE Alu -8 139 13 1 1424 1119 95 0 0 chr11 110092596 110092743 -11751113 - B1_Mus1 SINE Alu 0 148 2 1 1424 438 274 14 36 chr11 110092770 110092910 -11750946 + ID_B1 SINE B4 87 223 -1 1 1424 750 203 0 0 chr11 110092998 110093131 -11750725 - URR1B DNA MER1_type -2 223 91 1 1424 995 95 56 19 chr11 110094407 110094568 -11749288 - B2_Mm2 SINE B2 -9 186 20 1 1424 32 86 0 0 chr11 110094796 110094877 -11748979 + AT_rich Low_complexity Low_complexity 1 81 0 1 1424 22 0 0 0 chr11 110095165 110095187 -11748669 + AT_rich Low_complexity Low_complexity 1 22 0 1 1424 250 338 12 30 chr11 110095305 110095470 -11748386 + L1ME3A LINE L1 3812 3973 -2173 1 1424 389 242 52 22 chr11 110095576 110095689 -11748167 + B3 SINE B2 78 197 -19 1 1424 2846 135 69 34 chr11 110095689 110096227 -11747629 + RLTR31B_Mm LTR ERVK 1 557 0 1 1424 389 242 52 22 chr11 110096227 110096248 -11747608 + B3 SINE B2 198 216 0 1 1424 494 361 98 25 chr11 110096308 110096962 -11746894 + L1ME3A LINE L1 5239 5952 -221 1 1424 4154 41 27 0 chr11 110097089 110097602 -11746254 - L1Md_F3 LINE L1 0 6584 6058 1 1424 356 125 62 0 chr11 110098558 110098622 -11745234 + Lx6 LINE L1 4346 4413 -1467 1 1424 252 0 0 0 chr11 110098671 110098699 -11745157 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1424 1055 77 43 49 chr11 110098699 110098862 -11744994 - B2_Mm2 SINE B2 -32 163 2 1 22 5126 183 99 76 chr11 110099501 110100644 -11743212 + Lx6 LINE L1 4444 5688 -192 1 1425 336 24 0 0 chr11 110100644 110100685 -11743171 + (TTGG)n Simple_repeat Simple_repeat 4 44 0 1 1425 274 186 0 17 chr11 110100691 110100751 -11743105 - B1_Mus2 SINE Alu -1 146 88 1 1425 5126 198 66 76 chr11 110100751 110101090 -11742766 + Lx6 LINE L1 5694 6013 -1447 1 1425 2777 202 77 11 chr11 110101084 110101704 -11742152 + Lx6 LINE L1 6792 7452 -8 1 1425 2927 90 0 15 chr11 110101905 110102311 -11741545 + MTB LTR MaLR 1 400 0 1 1425 458 75 15 0 chr11 110102689 110102756 -11741100 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1425 237 265 0 56 chr11 110105784 110105856 -11738000 + L1MD2 LINE L1 6203 6270 -89 1 1425 298 128 10 131 chr11 110105895 110105994 -11737862 + Lx3C LINE L1 6890 6976 0 1 1425 451 337 80 65 chr11 110106068 110106455 -11737401 + MLT1A1 LTR MaLR 16 408 0 1 1425 288 0 0 0 chr11 110107025 110107057 -11736799 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1425 21 0 0 0 chr11 110107495 110107516 -11736340 + AT_rich Low_complexity Low_complexity 1 21 0 1 1425 708 199 7 58 chr11 110110260 110110415 -11733441 + B1_Mur1 SINE Alu 2 148 -1 1 1425 679 137 8 8 chr11 110110430 110110555 -11733301 + GA-rich Low_complexity Low_complexity 4 128 0 1 1425 376 328 95 37 chr11 110110975 110111165 -11732691 + MLT1J2 LTR MaLR 108 308 -140 1 1425 315 0 0 0 chr11 110111493 110111528 -11732328 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1425 23 0 0 0 chr11 110112306 110112329 -11731527 + AT_rich Low_complexity Low_complexity 1 23 0 1 1425 552 68 0 0 chr11 110112480 110112553 -11731303 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 1 1425 189 0 0 0 chr11 110113078 110113099 -11730757 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1425 273 81 48 0 chr11 110113262 110113324 -11730532 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 1 1425 835 252 7 89 chr11 110114265 110114535 -11729321 - Lx6 LINE L1 -34 7426 7179 1 1425 1119 29 7 0 chr11 110114903 110115041 -11728815 + B1_Mm SINE Alu 9 147 0 1 1425 363 51 49 25 chr11 110115046 110115127 -11728729 + (CAAAA)n Simple_repeat Simple_repeat 2 84 0 1 1425 356 311 56 86 chr11 110115587 110115749 -11728107 + B4A SINE B4 136 292 0 1 1425 334 210 92 8 chr11 110115789 110115909 -11727947 - Lx9 LINE L1 -1 7643 7514 1 1425 1410 233 14 38 chr11 110115930 110116300 -11727556 - Lx6 LINE L1 -21 7439 7079 1 1425 408 145 217 0 chr11 110116643 110116726 -11727130 + PB1D9 SINE Alu 9 109 -11 1 1425 3718 151 83 14 chr11 110117093 110117299 -11726557 - Lx2 LINE L1 -18 6979 6747 1 1425 210 71 0 0 chr11 110117299 110117327 -11726529 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1425 3718 151 83 14 chr11 110117327 110117808 -11726048 - Lx2 LINE L1 -251 6746 6246 1 1425 702 180 54 54 chr11 110117919 110118049 -11725807 - B1_Mur4 SINE Alu -1 149 18 1 1425 2451 82 73 0 chr11 110118049 110118389 -11725467 + RLTR8 LTR ERVK 1 365 0 1 1425 702 180 54 54 chr11 110118389 110118405 -11725451 - B1_Mur4 SINE Alu -133 17 3 1 1425 1718 173 86 17 chr11 110118440 110118799 -11725057 + ORR1C2 LTR MaLR 1 384 0 1 1425 2679 257 84 29 chr11 110118799 110119597 -11724259 + ORR1C2-int LTR MaLR 1 842 -528 1 1425 501 236 92 11 chr11 110119598 110119782 -11724074 - L1MA5 LINE L1 -305 5995 5797 1 1425 266 0 29 0 chr11 110119785 110119819 -11724037 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1425 3863 155 29 18 chr11 110119832 110120516 -11723340 + RMER6D LTR ERVK 1 692 -28 2 1425 526 215 100 21 chr11 110120531 110120721 -11723135 - L1MA5 LINE L1 -501 5811 5607 1 1425 334 225 29 37 chr11 110120764 110120901 -11722955 - L1MA5 LINE L1 -873 5270 5128 1 1425 3709 115 13 7 chr11 110120964 110121517 -11722339 + Lx3B LINE L1 6415 6970 -3 2 1425 423 0 0 0 chr11 110121635 110121682 -11722174 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1425 1148 61 0 13 chr11 110121964 110122113 -11721743 + B1_Mus1 SINE Alu 2 148 0 2 1425 600 116 0 0 chr11 110122113 110122208 -11721648 + (A)n Simple_repeat Simple_repeat 1 95 0 2 1425 1482 180 119 28 chr11 110123246 110123261 -11720595 + ORR1C2-int LTR MaLR 982 993 -377 1 1425 747 0 0 0 chr11 110123261 110123344 -11720512 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 1425 1482 180 119 28 chr11 110123344 110123682 -11720174 + ORR1C2-int LTR MaLR 994 1367 -3 1 1425 249 109 0 0 chr11 110123872 110123918 -11719938 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1425 23 33 0 0 chr11 110124382 110124412 -11719444 + AT_rich Low_complexity Low_complexity 1 30 0 2 1425 4874 191 46 12 chr11 110124413 110125478 -11718378 - Lx5 LINE L1 -3 7047 5947 2 1425 242 348 14 0 chr11 110126776 110126845 -11717011 + ID4 SINE ID 1 70 -13 2 1425 231 204 0 0 chr11 110126845 110126899 -11716957 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1425 225 250 16 0 chr11 110126926 110126990 -11716866 + GA-rich Low_complexity Low_complexity 3 67 0 2 1425 753 288 73 24 chr11 110127751 110128039 -11715817 + RLTR17 LTR ERVK 125 426 -266 2 1425 248 125 0 24 chr11 110128296 110128337 -11715519 + RLTR31_Mur LTR ERVK 514 553 0 2 1425 216 0 0 0 chr11 110129230 110129254 -11714602 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 1425 936 204 25 10 chr11 110129341 110129544 -11714312 + B3 SINE B2 4 209 -7 2 1425 661 169 84 0 chr11 110130081 110130235 -11713621 + RMER1C Other Other 1176 1342 0 2 1425 22 80 0 0 chr11 110133433 110133483 -11710373 + AT_rich Low_complexity Low_complexity 1 50 0 2 1425 222 143 0 58 chr11 110133683 110133735 -11710121 + A-rich Low_complexity Low_complexity 1 49 0 2 1425 262 256 11 0 chr11 110134223 110134313 -11709543 + L1MA7 LINE L1 6197 6287 -4 2 1425 304 276 131 49 chr11 110134382 110134504 -11709352 + RSINE1 SINE B4 2 133 -32 2 1425 528 144 155 0 chr11 110136014 110136111 -11707745 + RMER6B LTR ERVK 1 112 -349 2 1425 2271 151 38 17 chr11 110136114 110136531 -11707325 + RMER6B LTR ERVK 34 459 -2 2 1425 380 272 16 0 chr11 110137379 110137504 -11706352 - L1MC3 LINE L1 -696 7089 6963 2 1425 293 259 6 55 chr11 110138130 110138225 -11705631 + ID4 SINE ID 11 104 -48 2 1425 287 267 107 19 chr11 110139202 110139305 -11704551 + PB1D10 SINE Alu 6 117 0 2 1425 672 262 100 0 chr11 110141359 110141519 -11702337 + B3A SINE B2 1 176 -22 2 1425 24 32 0 0 chr11 110141521 110141552 -11702304 + AT_rich Low_complexity Low_complexity 1 31 0 2 1425 622 267 385 14 chr11 110142040 110142253 -11701603 + B4A SINE B4 1 292 0 2 1425 1175 188 24 89 chr11 110142459 110142751 -11701105 + RLTR18 LTR ERVK 16 288 -328 2 1425 471 296 26 9 chr11 110142933 110143049 -11700807 + RMER10B LTR ERVL 270 387 -11 2 1425 1027 259 16 20 chr11 110143058 110143306 -11700550 + RLTR18 LTR ERVK 257 503 -9 2 1425 429 20 0 0 chr11 110143307 110143357 -11700499 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1425 1104 244 101 161 chr11 110143838 110144274 -11699582 + Lx9 LINE L1 4905 5395 -2249 2 1425 1023 112 0 0 chr11 110144274 110144417 -11699439 + B2_Mm2 SINE B2 2 144 -51 2 1425 1104 244 101 161 chr11 110144417 110144878 -11698978 + Lx9 LINE L1 5396 5916 -1728 2 1425 757 282 34 27 chr11 110144885 110145180 -11698676 + Lx9 LINE L1 7010 7306 -338 2 1425 320 188 66 13 chr11 110145202 110145353 -11698503 + (TA)n Simple_repeat Simple_repeat 1 159 0 2 1425 31 0 0 0 chr11 110145361 110145392 -11698464 + AT_rich Low_complexity Low_complexity 1 31 0 2 1425 244 243 14 75 chr11 110146046 110146193 -11697663 + L1MB7 LINE L1 5273 5410 -768 2 1425 351 278 47 94 chr11 110146277 110146448 -11697408 + RSINE1 SINE B4 3 165 0 2 1425 305 342 73 69 chr11 110146728 110146973 -11696883 + L1MB7 LINE L1 5861 6106 -78 2 1425 378 226 43 11 chr11 110147474 110147568 -11696288 + PB1D10 SINE Alu 21 117 0 2 1425 315 317 25 99 chr11 110147782 110147943 -11695913 - ID_B1 SINE B4 -41 183 35 2 1425 394 171 105 47 chr11 110147934 110148020 -11695836 - B3 SINE B2 -125 91 1 2 1425 25 65 0 0 chr11 110149547 110149593 -11694263 + AT_rich Low_complexity Low_complexity 1 46 0 2 1425 888 250 14 19 chr11 110149847 110150055 -11693801 - B3 SINE B2 -6 210 4 2 1425 207 0 0 0 chr11 110150097 110150120 -11693736 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1425 964 168 0 7 chr11 110150130 110150280 -11693576 - B1_Mur1 SINE Alu 0 149 1 2 1425 23 0 0 0 chr11 110150907 110150930 -11692926 + AT_rich Low_complexity Low_complexity 1 23 0 2 1425 226 313 12 35 chr11 110151972 110152058 -11691798 + RSINE1 SINE B4 3 86 -79 2 1425 893 219 15 25 chr11 110151981 110152178 -11691678 + B3 SINE B2 9 203 -13 2 1425 339 302 43 55 chr11 110152178 110152468 -11691388 + L1MD2 LINE L1 5684 5970 -389 2 1425 896 181 123 33 chr11 110152469 110152680 -11691176 + MTD LTR MaLR 190 419 0 2 1425 1294 87 22 0 chr11 110152771 110152955 -11690901 - B2_Mm2 SINE B2 -7 188 1 2 1425 724 292 5 16 chr11 110152995 110153183 -11690673 - B3 SINE B2 -30 186 1 2 1425 425 286 16 32 chr11 110153240 110153363 -11690493 - RSINE1 SINE B4 -6 159 39 2 1425 409 306 84 42 chr11 110155267 110155458 -11688398 + MIR SINE MIR 37 235 -27 2 1425 473 0 48 0 chr11 110156306 110156369 -11687487 - L1Md_F3 LINE L1 -7 6577 6512 2 1425 213 167 0 91 chr11 110156711 110156810 -11687046 + T-rich Low_complexity Low_complexity 3 92 0 2 1425 2977 38 51 5 chr11 110156820 110157195 -11686661 + MTA_Mm LTR MaLR 1 392 -4 2 1425 620 171 60 37 chr11 110157195 110157329 -11686527 - B1_Mur3 SINE Alu -12 137 1 2 1425 25 0 0 0 chr11 110157357 110157382 -11686474 + AT_rich Low_complexity Low_complexity 1 25 0 2 1425 232 254 18 0 chr11 110158129 110158184 -11685672 + MLT1A LTR MaLR 1 56 -318 2 1425 27 29 0 0 chr11 110158854 110158888 -11684968 + AT_rich Low_complexity Low_complexity 1 34 0 2 1425 687 215 22 0 chr11 110158989 110159124 -11684732 + B1_Mur1 SINE Alu 1 138 -11 2 1425 304 329 14 0 chr11 110160406 110160479 -11683377 - ID4_ SINE ID -4 79 6 2 1425 1240 48 0 0 chr11 110160602 110160748 -11683108 + B1_Mus2 SINE Alu 2 147 0 2 1425 264 277 192 37 chr11 110161383 110161520 -11682336 + B3A SINE B2 7 169 -29 2 1425 309 68 0 0 chr11 110161520 110161564 -11682292 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1425 264 277 192 37 chr11 110161564 110161587 -11682269 + B3A SINE B2 170 191 -7 2 1425 376 297 6 69 chr11 110161648 110161807 -11682049 + B1F SINE Alu 1 149 0 2 1425 710 85 19 0 chr11 110161825 110161931 -11681925 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 2 1425 244 283 35 59 chr11 110161952 110162121 -11681735 - Charlie1 DNA MER1_type -1 2780 2616 2 1425 238 246 7 73 chr11 110162265 110162375 -11681481 - B1F2 SINE Alu -9 140 40 2 1425 441 309 11 37 chr11 110163184 110163372 -11680484 - MIR SINE MIR -58 204 22 2 1425 639 314 79 36 chr11 110163685 110164172 -11679684 + MER68 LTR ERVL 24 563 0 2 1425 410 267 20 0 chr11 110164741 110164842 -11679014 - PB1D10 SINE Alu -14 103 1 2 1425 704 296 15 5 chr11 110165150 110165354 -11678502 - B3 SINE B2 -8 208 3 2 1425 420 89 0 90 chr11 110165845 110165956 -11677900 + GA-rich Low_complexity Low_complexity 2 102 0 2 1425 38 39 0 0 chr11 110167288 110167340 -11676516 + AT_rich Low_complexity Low_complexity 1 52 0 2 1425 21 0 0 0 chr11 110167363 110167384 -11676472 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 992 72 58 0 chr11 110167818 110167957 -11675899 + B1_Mus2 SINE Alu 1 147 0 2 1425 288 102 0 0 chr11 110167957 110168006 -11675850 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1425 27 49 0 0 chr11 110168495 110168536 -11675320 + AT_rich Low_complexity Low_complexity 1 41 0 2 1425 407 277 114 27 chr11 110168540 110168842 -11675014 - L1M5 LINE L1 -1316 4830 4508 2 1425 4930 43 3 0 chr11 110168842 110169427 -11674429 + LTRIS_Mus LTR ERV1 1 587 0 2 1425 407 277 114 27 chr11 110169427 110169491 -11674365 - L1M5 LINE L1 -1639 4507 4433 2 1425 21 0 0 0 chr11 110169518 110169539 -11674317 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 23 0 0 0 chr11 110169945 110169968 -11673888 + AT_rich Low_complexity Low_complexity 1 23 0 2 1425 372 133 0 0 chr11 110170326 110170386 -11673470 + (T)n Simple_repeat Simple_repeat 1 60 0 2 1425 23 33 0 0 chr11 110170779 110170809 -11673047 + AT_rich Low_complexity Low_complexity 1 30 0 2 1425 371 205 250 0 chr11 110171721 110171833 -11672023 + B1_Mur1 SINE Alu 5 144 -5 2 1425 871 133 82 0 chr11 110171933 110172068 -11671788 + B1_Mus1 SINE Alu 2 147 -1 2 1425 260 196 89 40 chr11 110172068 110172169 -11671687 + Lx9 LINE L1 7537 7642 -2 2 1425 660 118 0 0 chr11 110172376 110172503 -11671353 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 2 1425 684 95 86 0 chr11 110172924 110173040 -11670816 - L1_Mus2 LINE L1 0 6566 6441 2 1425 621 160 8 92 chr11 110173131 110173262 -11670594 - PB1D9 SINE Alu 0 120 1 2 1425 228 342 137 0 chr11 110173527 110173644 -11670212 + MIR3 SINE MIR 52 184 -24 2 1425 24 67 0 0 chr11 110173901 110173946 -11669910 + AT_rich Low_complexity Low_complexity 1 45 0 2 1425 812 280 21 0 chr11 110173947 110174133 -11669723 - B3 SINE B2 -25 191 2 2 1425 235 342 37 73 chr11 110175057 110175221 -11668635 - B4 SINE B4 -123 169 12 2 1425 22 0 0 0 chr11 110175314 110175336 -11668520 + AT_rich Low_complexity Low_complexity 1 22 0 2 1425 23 0 0 0 chr11 110176560 110176583 -11667273 + AT_rich Low_complexity Low_complexity 1 23 0 2 1425 709 215 30 0 chr11 110176698 110176833 -11667023 + B1_Mur2 SINE Alu 5 143 -6 2 1425 982 225 19 5 chr11 110176858 110177068 -11666788 + B3 SINE B2 1 213 -3 2 1425 1282 81 40 0 chr11 110177164 110177337 -11666519 + B2_Mm2 SINE B2 2 181 -14 3 1425 1089 22 81 0 chr11 110177356 110177492 -11666364 + B1_Mm SINE Alu 1 147 0 3 1425 426 264 18 0 chr11 110177618 110177728 -11666128 - PB1D10 SINE Alu -5 112 1 3 1425 212 0 36 0 chr11 110177947 110177975 -11665881 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1425 2239 181 7 30 chr11 110178065 110178503 -11665353 + Lx5 LINE L1 6620 7047 -3 3 1425 180 0 0 0 chr11 110178910 110178930 -11664926 + (CACAG)n Simple_repeat Simple_repeat 3 22 0 3 1425 565 178 269 34 chr11 110179657 110179832 -11664024 + B3 SINE B2 1 216 0 3 1425 504 135 433 0 chr11 110179947 110180088 -11663768 + B3 SINE B2 1 202 -14 3 1425 368 284 44 112 chr11 110181400 110181717 -11662139 + B4A SINE B4 5 292 0 3 1425 2026 240 71 127 chr11 110181797 110182618 -11661238 + RLTR22_Mur LTR ERVK 2 776 -1072 3 1425 565 14 0 26 chr11 110182642 110182718 -11661138 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 1425 582 206 203 11 chr11 110182724 110182906 -11660950 + RLTR22_Mus LTR ERVK 1036 1252 -556 3 1425 564 116 0 0 chr11 110182952 110183038 -11660818 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1425 1275 239 99 147 chr11 110183038 110183616 -11660240 + RMER12 LTR ERVK 770 1319 -3 3 1425 276 103 0 0 chr11 110183681 110183720 -11660136 + B3 SINE B2 2 40 -176 3 1425 276 103 0 0 chr11 110183753 110183792 -11660064 + B3 SINE B2 2 40 -176 3 1425 6502 222 38 23 chr11 110183793 110185250 -11658606 + Lx6 LINE L1 5530 6998 -462 3 1425 6092 103 33 26 chr11 110185250 110186197 -11657659 + Lx4A LINE L1 6094 7046 -12 3 1425 6502 231 48 23 chr11 110186197 110186448 -11657408 + Lx6 LINE L1 6999 7283 -177 3 1425 60 59 0 0 chr11 110186821 110186923 -11656933 + AT_rich Low_complexity Low_complexity 1 102 0 3 1425 180 97 0 0 chr11 110186938 110186969 -11656887 + (TAGG)n Simple_repeat Simple_repeat 2 32 0 3 1425 662 192 199 0 chr11 110186976 110187127 -11656729 + B3 SINE B2 30 210 -6 3 1425 22 35 0 0 chr11 110187498 110187527 -11656329 + AT_rich Low_complexity Low_complexity 1 29 0 3 1425 270 136 0 0 chr11 110187549 110187593 -11656263 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1425 534 176 49 10 chr11 110187605 110187733 -11656123 - B1_Mur1 SINE Alu -1 149 1 3 1425 350 197 135 30 chr11 110188905 110189023 -11654833 + B3A SINE B2 88 216 0 3 1425 456 148 208 42 chr11 110189572 110189692 -11654164 + B1_Mm SINE Alu 2 141 -6 3 1425 228 286 205 29 chr11 110190659 110190864 -11652992 + L1MD2 LINE L1 35 275 -6272 3 1425 1117 37 15 0 chr11 110190892 110191027 -11652829 + B1_Mus2 SINE Alu 2 138 -9 3 1425 378 353 121 55 chr11 110191085 110191448 -11652408 + L1MD2 LINE L1 341 727 -5820 3 1425 739 273 87 62 chr11 110192198 110192600 -11651256 + Lx8 LINE L1 6425 6836 -637 3 1425 243 0 0 0 chr11 110192787 110192814 -11651042 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1425 318 65 32 16 chr11 110192943 110193006 -11650850 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1425 410 170 50 60 chr11 110193740 110193840 -11650016 + B1_Mus1 SINE Alu 13 111 -37 3 1425 959 187 44 3 chr11 110194125 110194317 -11649539 - B2_Mm2 SINE B2 -13 203 1 3 1425 601 330 83 12 chr11 110194476 110194718 -11649138 + MIR SINE MIR 4 262 0 3 1425 310 237 89 40 chr11 110195340 110195441 -11648415 - RSINE1 SINE B4 -54 111 6 3 1425 510 344 40 28 chr11 110196340 110196591 -11647265 + MER58B DNA MER1_type 87 340 -1 3 1425 229 271 25 25 chr11 110197053 110197174 -11646682 + L2 LINE L2 1435 1555 -1864 3 1425 213 336 25 66 chr11 110198029 110198150 -11645706 + MIRc SINE MIR 17 132 -136 3 1425 270 0 0 0 chr11 110199691 110199721 -11644135 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1425 342 276 0 0 chr11 110200263 110200339 -11643517 + ID4_ SINE ID 2 77 -6 3 1425 25 0 0 0 chr11 110200409 110200434 -11643422 + AT_rich Low_complexity Low_complexity 1 25 0 3 1425 1461 217 45 20 chr11 110200983 110201137 -11642719 + ORR1D1 LTR MaLR 13 166 -208 3 1425 528 16 0 0 chr11 110201137 110201198 -11642658 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1425 1461 217 45 20 chr11 110201198 110201396 -11642460 + ORR1D1 LTR MaLR 167 373 -1 3 1425 431 49 33 0 chr11 110201423 110201484 -11642372 + (TATAG)n Simple_repeat Simple_repeat 4 66 0 3 1425 1254 40 0 0 chr11 110201510 110201658 -11642198 - B1_Mus1 SINE Alu 0 148 1 3 1425 9648 9 0 0 chr11 110201868 110203005 -11640851 + L1Md_A LINE L1 4450 5586 -297 3 1425 8854 14 0 0 chr11 110203005 110204001 -11639855 + L1Md_A LINE L1 5587 6582 0 3 1425 249 368 0 9 chr11 110204410 110204517 -11639339 - ID_B1 SINE B4 0 224 119 3 1425 243 282 90 0 chr11 110204601 110204679 -11639177 + B1F2 SINE Alu 14 98 -51 3 1425 24 0 0 0 chr11 110205467 110205491 -11638365 + AT_rich Low_complexity Low_complexity 1 24 0 3 1425 1563 32 22 0 chr11 110205593 110205778 -11638078 - B2_Mm1t SINE B2 -4 189 1 3 1425 265 373 40 9 chr11 110205800 110206022 -11637834 + L3 LINE CR1 3563 3791 -698 3 1425 23 0 0 0 chr11 110206081 110206104 -11637752 + GC_rich Low_complexity Low_complexity 1 23 0 3 1425 281 341 80 59 chr11 110206447 110206634 -11637222 + MLT1D LTR MaLR 7 197 -308 3 1425 748 174 56 67 chr11 110206687 110206850 -11637006 + B2_Mm2 SINE B2 1 163 -32 3 1425 405 0 0 0 chr11 110206850 110206895 -11636961 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1425 748 174 56 67 chr11 110206895 110206910 -11636946 + B2_Mm2 SINE B2 164 177 -18 3 1425 351 0 0 0 chr11 110206912 110206951 -11636905 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1425 815 174 214 0 chr11 110206981 110207159 -11636697 + B3 SINE B2 1 216 0 3 1425 369 0 0 0 chr11 110207168 110207209 -11636647 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1425 708 264 87 66 chr11 110207221 110207509 -11636347 + MLT1D LTR MaLR 209 502 -3 3 1425 270 0 0 0 chr11 110207536 110207566 -11636290 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1425 518 264 27 34 chr11 110207567 110207716 -11636140 - B3A SINE B2 -50 148 1 3 1425 234 91 0 0 chr11 110207936 110207969 -11635887 + (TCC)n Simple_repeat Simple_repeat 1 33 0 3 1425 882 152 0 17 chr11 110207972 110208152 -11635704 + CT-rich Low_complexity Low_complexity 1 177 0 3 1425 195 388 28 23 chr11 110208227 110208441 -11635415 - MIR SINE MIR 0 262 48 3 1425 571 159 47 16 chr11 110209819 110209893 -11633963 - Lx3C LINE L1 -19 6954 6882 3 1425 207 0 0 0 chr11 110209893 110209916 -11633940 + (CACCC)n Simple_repeat Simple_repeat 1 23 0 3 1425 571 159 47 16 chr11 110209916 110209969 -11633887 - Lx3C LINE L1 -92 6881 6824 3 1425 2787 83 0 0 chr11 110209969 110210356 -11633500 - Lx3C LINE L1 -304 6672 6286 3 1425 514 216 87 77 chr11 110210628 110210660 -11633196 - B3A SINE B2 0 198 169 3 1425 306 73 0 0 chr11 110210660 110210701 -11633155 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1425 514 216 87 77 chr11 110210701 110210864 -11632992 - B3A SINE B2 -30 168 1 3 1425 405 51 50 25 chr11 110210892 110210972 -11632884 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 3 1425 2339 109 70 11 chr11 110211635 110212007 -11631849 - ORR1B1 LTR MaLR 0 394 1 3 1425 201 176 0 0 chr11 110212351 110212385 -11631471 + A-rich Low_complexity Low_complexity 1 34 0 3 1425 453 218 202 0 chr11 110212432 110212556 -11631300 + B1_Mus2 SINE Alu 1 149 0 3 1425 1218 91 34 0 chr11 110212649 110212824 -11631032 + B2_Mm2 SINE B2 1 181 -14 3 1425 381 86 42 37 chr11 110212837 110212945 -11630911 + B2_Mm2 SINE B2 47 190 -5 3 1425 347 131 0 115 chr11 110212993 110213071 -11630785 + B1_Mur3 SINE Alu 74 142 -5 3 1425 481 245 63 21 chr11 110213129 110213271 -11630585 + B1_Mur2 SINE Alu 2 149 0 3 1425 342 0 0 0 chr11 110213372 110213410 -11630446 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1425 1218 41 7 0 chr11 110213690 110213837 -11630019 - B1_Mus1 SINE Alu 0 148 1 3 1425 727 230 45 20 chr11 110214528 110214728 -11629128 + B3 SINE B2 1 205 -11 3 1425 1062 183 140 65 chr11 110214750 110215101 -11628755 + Lx5 LINE L1 6671 7047 -3 3 1425 613 153 45 9 chr11 110215446 110215558 -11628298 + B1_Mur2 SINE Alu 34 149 0 3 1425 296 83 21 0 chr11 110215558 110215606 -11628250 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1425 254 315 29 73 chr11 110215643 110215780 -11628076 - ORR1D2 LTR MaLR -67 303 173 3 1425 2442 153 60 38 chr11 110215783 110216174 -11627682 - RLTR20A2 LTR ERVK 0 551 148 3 1425 3285 20 10 39 chr11 110216174 110216582 -11627274 + MTA_Mm LTR MaLR 1 396 0 3 1425 2442 150 47 28 chr11 110216582 110216723 -11627133 - RLTR20A2 LTR ERVK -431 147 1 3 1425 1097 75 7 0 chr11 110217730 110217877 -11625979 + B1_Mus1 SINE Alu 1 148 0 3 1425 774 190 0 14 chr11 110217893 110218037 -11625819 + B1_Mus1 SINE Alu 1 142 -6 3 1425 1135 127 26 21 chr11 110218046 110218239 -11625617 + B2_Mm2 SINE B2 2 195 0 3 1425 667 215 11 0 chr11 110218550 110218727 -11625129 + CT-rich Low_complexity Low_complexity 2 180 0 3 1425 794 191 0 0 chr11 110218732 110218863 -11624993 - B1_Mus2 SINE Alu -16 131 1 3 1425 279 0 0 0 chr11 110218895 110218926 -11624930 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 3 1425 662 244 92 15 chr11 110219156 110219352 -11624504 + B3 SINE B2 1 211 -5 3 1425 597 253 9 112 chr11 110220018 110220232 -11623624 - B3A SINE B2 -6 192 1 3 1425 227 231 0 55 chr11 110220307 110220362 -11623494 - MLT1B LTR MaLR 0 390 339 3 1425 271 317 90 98 chr11 110220772 110221027 -11622829 + ORR1E LTR MaLR 101 353 -6 3 1425 622 301 19 5 chr11 110221184 110221391 -11622465 - B3 SINE B2 -6 210 1 3 1425 650 239 107 59 chr11 110221490 110221743 -11622113 + RLTR9A LTR ERVK 104 368 0 3 1425 507 332 95 58 chr11 110221829 110222177 -11621679 - MTD LTR MaLR -54 365 5 3 1425 301 303 118 29 chr11 110222240 110222376 -11621480 - MamGypLTR2b LTR Gypsy -691 231 84 3 1425 194 323 0 16 chr11 110222822 110222885 -11620971 - L2b LINE L2 -2 3373 3312 3 1425 345 100 0 0 chr11 110223331 110223381 -11620475 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1425 828 228 80 22 chr11 110223387 110223611 -11620245 - B4 SINE B4 -29 263 27 3 1425 6186 47 5 3 chr11 110223724 110224478 -11619378 + L1Md_F2 LINE L1 5826 6581 -1 4 1425 2056 151 92 20 chr11 110224971 110225364 -11618492 + MTC LTR MaLR 1 421 0 4 1425 462 309 67 28 chr11 110225370 110225550 -11618306 + B3A SINE B2 2 188 -10 4 1425 1125 69 7 0 chr11 110225560 110225705 -11618151 + B1_Mus2 SINE Alu 2 147 0 4 1425 990 181 109 0 chr11 110225754 110225947 -11617909 + B3 SINE B2 3 216 0 4 1425 678 264 15 84 chr11 110226456 110226659 -11617197 - B3 SINE B2 -25 191 3 4 1425 23 54 0 0 chr11 110226659 110226696 -11617160 + AT_rich Low_complexity Low_complexity 1 37 0 4 1425 1204 54 0 0 chr11 110226696 110226843 -11617013 + B1_Mus1 SINE Alu 2 148 0 4 1425 246 128 0 0 chr11 110226843 110226882 -11616974 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1425 1233 101 0 0 chr11 110226884 110227063 -11616793 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 4 1425 279 280 155 31 chr11 110228144 110228273 -11615583 - L2b LINE L2 0 3426 3279 4 1425 506 326 6 27 chr11 110228279 110228462 -11615394 + B3A SINE B2 1 179 -19 4 1425 222 118 0 0 chr11 110228463 110228497 -11615359 + (CAT)n Simple_repeat Simple_repeat 3 36 0 4 1425 804 247 60 6 chr11 110228522 110228705 -11615151 + B3A SINE B2 1 193 -5 4 1425 261 0 0 0 chr11 110229608 110229637 -11614219 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1425 616 254 0 0 chr11 110229637 110229775 -11614081 - B1_Mur1 SINE Alu -10 139 2 4 1425 319 264 0 127 chr11 110229668 110229794 -11614062 - MT2B LTR ERVL -340 261 152 4 1425 233 308 0 0 chr11 110230346 110230398 -11613458 + ID SINE ID 22 73 -151 4 1425 525 322 14 14 chr11 110230416 110230564 -11613292 + RSINE1 SINE B4 2 149 -16 4 1426 244 221 162 0 chr11 110231610 110231678 -11612178 + ID4 SINE ID 5 83 0 4 1426 180 0 0 0 chr11 110232157 110232177 -11611679 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 4 1426 547 292 12 0 chr11 110232207 110232378 -11611478 - ID_B1 SINE B4 -49 175 3 4 1426 1000 31 0 0 chr11 110232461 110232589 -11611267 + B1_Mus2 SINE Alu 10 137 -10 4 1426 228 35 0 0 chr11 110232589 110232618 -11611238 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1426 432 91 0 0 chr11 110232774 110232840 -11611016 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1426 243 0 0 0 chr11 110233185 110233212 -11610644 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1426 180 0 0 0 chr11 110233327 110233347 -11610509 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1426 209 250 0 0 chr11 110233648 110233696 -11610160 + G-rich Low_complexity Low_complexity 1 48 0 4 1426 23 54 0 0 chr11 110233831 110233868 -11609988 + AT_rich Low_complexity Low_complexity 1 37 0 4 1426 186 43 0 0 chr11 110234447 110234470 -11609386 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1426 317 291 58 37 chr11 110234470 110234659 -11609197 + HAL1b LINE L1 1629 1821 -188 4 1426 729 237 141 21 chr11 110234870 110235154 -11608702 + Lx8 LINE L1 7154 7471 -2 4 1426 180 0 0 0 chr11 110235266 110235286 -11608570 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1426 923 223 30 5 chr11 110235793 110235996 -11607860 + B3 SINE B2 4 211 -5 4 1426 212 189 0 0 chr11 110236064 110236101 -11607755 + T-rich Low_complexity Low_complexity 1 37 0 4 1426 619 207 104 0 chr11 110236101 110236236 -11607620 - B1_Mur2 SINE Alu 0 149 1 4 1426 652 254 66 33 chr11 110236518 110236701 -11607155 + B3 SINE B2 1 189 -27 4 1426 1107 44 7 7 chr11 110236888 110237024 -11606832 - B1_Mm SINE Alu -9 138 3 4 1426 393 127 0 0 chr11 110237306 110237385 -11606471 + (TATG)n Simple_repeat Simple_repeat 2 80 0 4 1426 321 47 0 0 chr11 110237389 110237432 -11606424 - HAL1-3A_ME LINE L1 -840 2018 1976 4 1426 237 250 122 20 chr11 110237509 110237607 -11606249 + B3A SINE B2 2 109 -107 4 1426 213 65 0 0 chr11 110237672 110237703 -11606153 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1426 249 298 145 24 chr11 110237710 110237834 -11606022 - L2a LINE L2 -233 3193 3055 4 1426 979 206 90 14 chr11 110237927 110238212 -11605644 - ORR1D1 LTR MaLR -40 334 28 4 1426 633 216 28 14 chr11 110238212 110238353 -11605503 + B3A SINE B2 1 143 -55 4 1426 372 88 0 0 chr11 110238357 110238414 -11605442 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1426 27 29 0 0 chr11 110238414 110238448 -11605408 + AT_rich Low_complexity Low_complexity 1 34 0 4 1426 712 296 97 51 chr11 110238485 110238898 -11604958 - L1MB2 LINE L1 -83 6088 5657 4 1426 367 257 64 9 chr11 110238989 110239099 -11604757 - PB1D10 SINE Alu -1 116 1 4 1426 275 72 0 23 chr11 110239207 110239250 -11604606 + (TATG)n Simple_repeat Simple_repeat 1 42 0 4 1426 855 89 0 0 chr11 110239258 110239382 -11604474 - B2_Mm2 SINE B2 -70 125 2 4 1426 237 360 0 0 chr11 110239470 110239507 -11604349 + polypyrimidine Low_complexity Low_complexity 41 77 0 4 1426 2420 63 32 129 chr11 110239507 110239911 -11603945 - RLTR10B2 LTR ERVK 0 365 1 4 1426 237 360 0 0 chr11 110239911 110239948 -11603908 + polypyrimidine Low_complexity Low_complexity 4 40 0 4 1426 1635 32 11 0 chr11 110240148 110240338 -11603518 - B2_Mm1a SINE B2 0 193 2 4 1426 789 162 17 0 chr11 110240405 110240578 -11603278 + (TGAA)n Simple_repeat Simple_repeat 1 176 0 4 1426 216 0 0 0 chr11 110240881 110240905 -11602951 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1426 328 274 58 10 chr11 110240924 110241027 -11602829 - PB1D10 SINE Alu -9 108 1 4 1426 546 250 51 38 chr11 110242343 110242501 -11601355 - B3A SINE B2 -35 163 4 4 1426 305 274 52 21 chr11 110242999 110243096 -11600760 - PB1D10 SINE Alu -13 104 5 4 1426 21 57 0 0 chr11 110243395 110243430 -11600426 + AT_rich Low_complexity Low_complexity 1 35 0 4 1426 9632 81 49 10 chr11 110243449 110245068 -11598788 - Lx3A LINE L1 -1 6980 5319 4 1426 278 252 92 0 chr11 110245093 110245212 -11598644 + MER33 DNA MER1_type 111 240 -84 4 1426 233 29 0 29 chr11 110245214 110245249 -11598607 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1426 315 71 0 0 chr11 110245660 110245702 -11598154 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 4 1426 1263 94 0 0 chr11 110245703 110245883 -11597973 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1426 671 221 90 6 chr11 110246517 110246694 -11597162 + B3 SINE B2 19 210 -6 4 1426 201 381 34 8 chr11 110246746 110246865 -11596991 - MIR SINE MIR -33 229 108 4 1426 2435 78 19 3 chr11 110246953 110247275 -11596581 + ORR1A2 LTR MaLR 1 327 0 4 1426 30 0 0 0 chr11 110247363 110247393 -11596463 + AT_rich Low_complexity Low_complexity 1 30 0 4 1426 1196 62 0 0 chr11 110247393 110247539 -11596317 - B1_Mus2 SINE Alu 0 147 2 4 1426 555 255 57 6 chr11 110247566 110247724 -11596132 + B3A SINE B2 2 167 -31 4 1426 564 299 11 17 chr11 110247902 110248082 -11595774 + B3A SINE B2 1 179 -19 4 1426 1113 47 44 6 chr11 110248086 110248434 -11595422 + (GA)n Simple_repeat Simple_repeat 1 361 0 4 1426 2012 32 56 0 chr11 110248593 110248842 -11595014 - L1Md_F2 LINE L1 -12 6570 6308 4 1426 820 72 0 23 chr11 110249000 110249128 -11594728 + B2_Mm2 SINE B2 48 172 -23 4 1426 296 189 0 201 chr11 110249151 110249290 -11594566 + PB1D9 SINE Alu 10 120 0 4 1426 1333 69 6 17 chr11 110249576 110249592 -11594264 - B2_Mm2 SINE B2 -19 176 162 4 1426 186 43 0 0 chr11 110249592 110249615 -11594241 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1426 1333 69 6 17 chr11 110249615 110249774 -11594082 - B2_Mm2 SINE B2 -34 161 3 4 1426 1355 95 32 0 chr11 110249906 110250095 -11593761 - B2_Mm2 SINE B2 0 195 1 4 1426 858 210 0 146 chr11 110250197 110250443 -11593413 + B3 SINE B2 1 210 -6 4 1426 493 240 0 0 chr11 110251062 110251162 -11592694 + B3 SINE B2 1 100 -116 4 1426 1010 204 217 114 chr11 110251953 110252152 -11591704 - RMER15 LTR ERVL 0 575 424 4 1426 1239 27 0 13 chr11 110252152 110252301 -11591555 - B1_Mm SINE Alu 0 147 1 4 1426 1010 204 217 114 chr11 110252301 110252599 -11591257 - RMER15 LTR ERVL -152 423 27 4 1426 254 242 16 0 chr11 110252697 110252759 -11591097 - RMER15 LTR ERVL -505 70 8 4 1426 1622 134 35 11 chr11 110252817 110253104 -11590752 + ORR1B1 LTR MaLR 101 394 0 4 1426 444 82 0 0 chr11 110253882 110253943 -11589913 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1426 28 29 0 0 chr11 110254054 110254089 -11589767 + AT_rich Low_complexity Low_complexity 1 35 0 4 1426 626 282 0 47 chr11 110254345 110254535 -11589321 + B3A SINE B2 2 182 -16 4 1426 1195 106 12 0 chr11 110254855 110255025 -11588831 + B2_Mm1t SINE B2 4 175 -18 4 1426 1077 44 0 87 chr11 110255033 110255183 -11588673 + B1_Mus1 SINE Alu 2 138 -10 4 1426 188 0 74 0 chr11 110255183 110255210 -11588646 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1426 261 0 0 0 chr11 110255350 110255379 -11588477 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1426 739 271 43 24 chr11 110255389 110255597 -11588259 + B3A SINE B2 1 212 -4 4 1426 351 276 112 22 chr11 110256211 110256389 -11587467 - MER20 DNA MER1_type -5 214 21 4 1426 191 322 95 9 chr11 110256708 110256824 -11587032 - L2b LINE L2 -38 3337 3212 4 1426 628 255 0 38 chr11 110257687 110257846 -11586010 + RSINE1 SINE B4 3 155 -10 4 1426 285 233 123 28 chr11 110258360 110258466 -11585390 + B1F1 SINE Alu 1 116 -33 4 1426 357 125 0 0 chr11 110258484 110258540 -11585316 + (CAA)n Simple_repeat Simple_repeat 2 57 0 4 1426 316 269 8 77 chr11 110258633 110258750 -11585106 + B1F SINE Alu 40 149 0 4 1426 316 274 0 0 chr11 110258764 110258837 -11585019 + ID4_ SINE ID 5 77 -6 4 1426 235 259 0 0 chr11 110258837 110258891 -11584965 + G-rich Low_complexity Low_complexity 1 54 0 5 1426 294 286 40 10 chr11 110258895 110258994 -11584862 + LTR90A LTR LTR 857 958 -18 5 1426 201 147 29 0 chr11 110259430 110259464 -11584392 + G-rich Low_complexity Low_complexity 4 38 0 5 1426 225 0 0 0 chr11 110259941 110259966 -11583890 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1426 472 84 10 50 chr11 110260883 110260983 -11582873 + (TTTTC)n Simple_repeat Simple_repeat 2 97 0 5 1426 27 0 0 0 chr11 110261404 110261431 -11582425 + AT_rich Low_complexity Low_complexity 1 27 0 5 1426 234 0 0 0 chr11 110261748 110261774 -11582082 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1426 21 0 0 0 chr11 110262175 110262196 -11581660 + AT_rich Low_complexity Low_complexity 1 21 0 5 1426 255 231 35 53 chr11 110262321 110262435 -11581421 + (CATG)n Simple_repeat Simple_repeat 1 112 0 5 1426 557 231 68 0 chr11 110262553 110262700 -11581156 + RSINE1 SINE B4 3 159 -6 5 1426 22 35 0 0 chr11 110262714 110262743 -11581113 + AT_rich Low_complexity Low_complexity 1 29 0 5 1426 224 77 0 25 chr11 110262963 110263003 -11580853 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1426 360 0 0 0 chr11 110264326 110264366 -11579490 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1426 189 107 0 0 chr11 110264522 110264550 -11579306 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1426 1175 55 0 7 chr11 110264552 110264700 -11579156 - B1_Mus1 SINE Alu 0 148 2 5 1426 387 0 0 0 chr11 110264702 110264745 -11579111 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1426 665 194 30 15 chr11 110265291 110265422 -11578434 + B1_Mur1 SINE Alu 10 142 -7 5 1426 342 0 0 0 chr11 110265449 110265487 -11578369 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1426 396 0 0 0 chr11 110266040 110266084 -11577772 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1426 207 167 0 0 chr11 110267520 110267556 -11576300 + C-rich Low_complexity Low_complexity 1 36 0 5 1426 434 279 167 43 chr11 110267765 110267975 -11575881 + B4A SINE B4 1 236 -56 5 1426 293 43 0 42 chr11 110268092 110268140 -11575716 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 5 1426 1099 68 0 20 chr11 110268327 110268477 -11575379 - B1_Mus2 SINE Alu 0 147 1 5 1426 205 162 0 0 chr11 110268599 110268636 -11575220 + C-rich Low_complexity Low_complexity 1 37 0 5 1426 252 0 0 0 chr11 110268854 110268882 -11574974 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1426 1156 89 0 0 chr11 110268882 110269028 -11574828 - B1_Mus1 SINE Alu -2 146 1 5 1426 205 146 0 40 chr11 110269321 110269371 -11574485 + GA-rich Low_complexity Low_complexity 4 51 0 5 1426 303 28 0 0 chr11 110269371 110269407 -11574449 + (CAAG)n Simple_repeat Simple_repeat 2 37 0 5 1426 251 261 14 0 chr11 110269680 110269768 -11574088 - L1MA6 LINE L1 -127 6176 6085 5 1426 946 248 5 5 chr11 110269798 110270009 -11573847 + ID_B1 SINE B4 4 214 -10 5 1426 219 114 0 0 chr11 110270009 110270044 -11573812 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 1426 208 139 28 0 chr11 110270057 110270093 -11573763 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 5 1426 488 64 25 13 chr11 110270165 110270244 -11573612 - PB1D9 SINE Alu -1 119 40 5 1426 246 136 48 63 chr11 110270189 110270252 -11573604 - RLTR25B LTR ERVK -536 492 431 5 1426 354 324 71 29 chr11 110270282 110270492 -11573364 + MER58B DNA MER1_type 118 336 -5 5 1426 329 293 83 60 chr11 110271311 110271529 -11572327 - MIRb SINE MIR -26 242 20 5 1426 23 33 0 0 chr11 110272180 110272210 -11571646 + AT_rich Low_complexity Low_complexity 1 30 0 5 1426 345 266 0 0 chr11 110272289 110272368 -11571488 - B1F1 SINE Alu -65 84 6 5 1426 579 216 189 23 chr11 110272858 110273033 -11570823 + B3 SINE B2 5 208 -8 5 1426 22 0 0 0 chr11 110273769 110273791 -11570065 + AT_rich Low_complexity Low_complexity 1 22 0 5 1426 288 229 18 9 chr11 110274566 110274676 -11569180 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1426 303 275 43 0 chr11 110274683 110274751 -11569105 - B4 SINE B4 0 292 222 5 1426 588 212 89 0 chr11 110274751 110274897 -11568959 + B3A SINE B2 1 159 -39 5 1426 792 287 5 18 chr11 110274974 110275199 -11568657 - B4 SINE B4 -59 233 15 5 1426 1420 267 30 55 chr11 110275399 110275874 -11567982 - MLT1C LTR MaLR 0 467 5 5 1426 885 89 0 0 chr11 110276997 110277121 -11566735 + (GGGAA)n Simple_repeat Simple_repeat 4 127 0 5 1426 710 256 38 5 chr11 110277354 110277539 -11566317 + B3 SINE B2 2 192 -24 5 1426 241 340 88 51 chr11 110278043 110278205 -11565651 - MIRb SINE MIR -79 189 15 5 1426 294 281 0 0 chr11 110278210 110278274 -11565582 - ID4_ SINE ID -18 65 2 5 1426 366 244 12 18 chr11 110278610 110278777 -11565079 + CT-rich Low_complexity Low_complexity 2 167 0 5 1426 1101 70 7 0 chr11 110278923 110279065 -11564791 - B1_Mus1 SINE Alu -1 147 5 5 1426 417 208 0 25 chr11 110279097 110279176 -11564680 - RSINE1 SINE B4 -86 79 3 5 1426 1253 47 0 0 chr11 110279500 110279648 -11564208 - B1_Mus1 SINE Alu 0 148 1 5 1426 489 283 58 7 chr11 110279682 110279821 -11564035 - B3 SINE B2 -70 146 1 5 1426 965 266 70 11 chr11 110280063 110280333 -11563523 + B4 SINE B4 3 288 -4 5 1426 216 163 0 0 chr11 110280337 110280380 -11563476 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1426 606 39 0 0 chr11 110281012 110281089 -11562767 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1426 304 200 43 160 chr11 110281089 110281222 -11562634 - B4A SINE B4 -5 287 177 5 1426 562 292 110 0 chr11 110282422 110282576 -11561280 - B3 SINE B2 -24 192 22 5 1426 1247 27 7 0 chr11 110282881 110283027 -11560829 - B1_Mm SINE Alu 0 147 1 5 1426 342 0 0 0 chr11 110283175 110283213 -11560643 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1426 788 155 0 42 chr11 110283574 110284078 -11559778 + (TTAGGG)n Simple_repeat Simple_repeat 1 482 0 5 1426 467 313 30 8 chr11 110284211 110284343 -11559513 + B1F SINE Alu 5 139 -10 5 1426 854 301 42 39 chr11 110284599 110284980 -11558876 - L1MB7 LINE L1 -29 6155 5774 5 1426 770 206 29 0 chr11 110285158 110285294 -11558562 + B1_Mur1 SINE Alu 1 140 -9 5 1426 289 257 59 106 chr11 110285829 110285999 -11557857 - RSINE1 SINE B4 -1 164 3 5 1426 252 313 40 10 chr11 110286435 110286535 -11557321 - B1F2 SINE Alu -46 103 1 5 1426 589 293 17 62 chr11 110286662 110286840 -11557016 + B3A SINE B2 7 176 -22 5 1426 339 130 0 0 chr11 110286854 110286908 -11556948 + (CCCCCT)n Simple_repeat Simple_repeat 3 56 0 5 1426 488 317 187 44 chr11 110286911 110287317 -11556539 - L1MDa LINE L1 -5136 1497 1034 5 1426 629 223 81 163 chr11 110287319 110287528 -11556328 - B3A SINE B2 -3 192 1 5 1426 2060 214 10 8 chr11 110287603 110287994 -11555862 + MTD LTR MaLR 12 403 -16 5 1426 316 289 70 13 chr11 110288013 110288162 -11555694 - L1MDa LINE L1 -5663 970 865 5 1426 217 325 105 32 chr11 110288866 110288990 -11554866 + MIR SINE MIR 62 194 -68 5 1426 761 252 5 40 chr11 110289238 110289461 -11554395 - B3 SINE B2 0 216 2 5 1426 450 0 0 0 chr11 110289505 110289555 -11554301 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 5 1426 566 240 0 51 chr11 110290185 110290343 -11553513 + RSINE1 SINE B4 16 165 0 5 1426 227 288 15 159 chr11 110291208 110291340 -11552516 - MLT1N2 LTR MaLR -429 133 21 5 1426 348 77 0 0 chr11 110291714 110291766 -11552090 + (TATG)n Simple_repeat Simple_repeat 1 52 0 5 1426 573 182 11 11 chr11 110291766 110291944 -11551912 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 5 1426 180 0 0 0 chr11 110292128 110292148 -11551708 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 1426 246 277 39 10 chr11 110292937 110293039 -11550817 - MIRb SINE MIR -50 218 114 5 1426 339 319 156 23 chr11 110294225 110294482 -11549374 - B4A SINE B4 0 292 2 5 1426 432 0 0 0 chr11 110295198 110295246 -11548610 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1426 407 313 175 12 chr11 110295533 110295779 -11548077 - B4A SINE B4 -2 290 5 5 1426 742 287 35 59 chr11 110295900 110296189 -11547667 - B4 SINE B4 -4 288 7 5 1426 755 157 0 0 chr11 110296184 110296299 -11547557 - B3 SINE B2 -98 118 4 5 1426 321 135 0 0 chr11 110296318 110296370 -11547486 + (CAA)n Simple_repeat Simple_repeat 2 53 0 5 1426 371 284 19 27 chr11 110296720 110296854 -11547002 + MER63D DNA AcHobo 1 134 -76 5 1426 274 273 8 160 chr11 110297609 110297740 -11546116 + MER20 DNA MER1_type 1 111 -108 5 1426 251 394 0 0 chr11 110297732 110297831 -11546025 + RMER15 LTR ERVL 372 470 -105 5 1426 736 40 0 20 chr11 110297881 110297983 -11545873 + (GGA)n Simple_repeat Simple_repeat 1 100 0 5 1426 288 111 0 0 chr11 110298117 110298162 -11545694 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1426 687 154 26 0 chr11 110299155 110299272 -11544584 + MTC LTR MaLR 1 120 -301 5 1426 534 44 295 74 chr11 110299276 110299398 -11544458 - B2_Mm2 SINE B2 0 195 47 5 1426 1248 88 12 0 chr11 110299408 110299579 -11544277 - B2_Mm1t SINE B2 -11 182 10 5 1426 1151 165 239 15 chr11 110299593 110299852 -11544004 + MTC LTR MaLR 105 421 0 5 1426 1178 178 38 5 chr11 110299870 110300079 -11543777 - B3 SINE B2 0 216 1 5 1426 493 238 37 137 chr11 110300284 110300474 -11543382 + MER5B DNA MER1_type 7 177 -1 5 1426 234 0 0 0 chr11 110300666 110300692 -11543164 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1426 504 276 89 47 chr11 110301157 110301370 -11542486 + ID_B1 SINE B4 2 223 -1 5 1426 1119 176 28 14 chr11 110301666 110301879 -11541977 - B3 SINE B2 0 216 1 5 1426 231 36 0 0 chr11 110302154 110302182 -11541674 + (G)n Simple_repeat Simple_repeat 1 28 0 5 1426 292 346 0 0 chr11 110302319 110302400 -11541456 - MER58C DNA MER1_type -2 213 133 5 1426 740 253 62 0 chr11 110302402 110302580 -11541276 + MTD LTR MaLR 2 190 -229 6 1426 944 26 0 0 chr11 110302582 110302697 -11541159 + B1_Mus1 SINE Alu 34 148 0 6 1426 276 148 0 0 chr11 110302703 110302764 -11541092 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 6 1426 465 235 171 52 chr11 110302764 110302952 -11540904 + MTD LTR MaLR 182 377 -23 6 1426 436 267 0 57 chr11 110303059 110303182 -11540674 - PB1D9 SINE Alu -4 116 1 6 1426 734 234 36 31 chr11 110303211 110303405 -11540451 - B3A SINE B2 -3 195 1 6 1426 852 244 59 9 chr11 110303606 110303825 -11540031 + MTEa LTR MaLR 144 373 -6 6 1426 236 343 0 28 chr11 110303872 110303980 -11539876 - LTR37B LTR ERV1 -166 302 198 6 1426 21 36 0 0 chr11 110303990 110304018 -11539838 + AT_rich Low_complexity Low_complexity 1 28 0 6 1426 998 257 39 75 chr11 110304158 110304490 -11539366 - MTEa LTR MaLR 0 379 60 6 1426 369 109 0 0 chr11 110304528 110304583 -11539273 + (TCCCC)n Simple_repeat Simple_repeat 2 56 0 6 1426 440 247 0 0 chr11 110304606 110304687 -11539169 - ID_B1 SINE B4 -66 158 78 6 1426 490 146 10 10 chr11 110304701 110304798 -11539058 + CT-rich Low_complexity Low_complexity 1 97 0 6 1426 551 15 15 0 chr11 110304877 110304945 -11538911 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1426 599 60 12 0 chr11 110305004 110305088 -11538768 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 6 1426 770 200 7 0 chr11 110305088 110305223 -11538633 - B1_Mur1 SINE Alu -12 137 2 6 1426 687 281 38 0 chr11 110305672 110305832 -11538024 + B3A SINE B2 2 167 -31 6 1426 402 21 0 0 chr11 110305833 110305880 -11537976 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1426 200 34 0 33 chr11 110305913 110305943 -11537913 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1426 21 0 0 0 chr11 110306250 110306271 -11537585 + AT_rich Low_complexity Low_complexity 1 21 0 6 1426 866 240 99 140 chr11 110306414 110306806 -11537050 - MTE2a LTR MaLR -3 376 1 6 1426 946 240 30 15 chr11 110306868 110307071 -11536785 + B3 SINE B2 6 211 -5 6 1426 313 347 59 13 chr11 110307195 110307347 -11536509 - HAL1-3A_ME LINE L1 -414 2444 2286 6 1426 320 294 138 14 chr11 110307328 110307466 -11536390 - HAL1-3A_ME LINE L1 -420 2438 2284 6 1426 205 267 0 0 chr11 110307466 110307511 -11536345 + CT-rich Low_complexity Low_complexity 3 47 0 6 1426 360 0 0 0 chr11 110308679 110308719 -11535137 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1426 302 107 18 0 chr11 110308719 110308775 -11535081 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1426 283 298 95 11 chr11 110308960 110309055 -11534801 - ID_B1 SINE B4 -23 201 99 6 1426 531 150 140 0 chr11 110309162 110309262 -11534594 - B1_Mus2 SINE Alu -16 131 18 6 1426 237 218 108 65 chr11 110309191 110309284 -11534572 - MT2B LTR ERVL -344 257 161 6 1426 243 0 0 0 chr11 110310040 110310067 -11533789 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1426 288 319 65 37 chr11 110310738 110310953 -11532903 + L1MC5 LINE L1 7697 7917 -44 6 1426 218 106 0 21 chr11 110311043 110311091 -11532765 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1426 279 171 0 0 chr11 110311281 110311357 -11532499 + GA-rich Low_complexity Low_complexity 1 76 0 6 1426 624 283 75 33 chr11 110311359 110311600 -11532256 - B4A SINE B4 -28 264 14 6 1426 237 337 68 135 chr11 110311969 110312295 -11531561 + BLACKJACK DNA AcHobo 2640 2943 -1 6 1426 190 383 75 0 chr11 110312368 110312488 -11531368 + MIR SINE MIR 110 238 -24 6 1426 797 260 142 23 chr11 110312836 110313096 -11530760 - B4A SINE B4 0 292 2 6 1426 1223 232 142 45 chr11 110313188 110313567 -11530289 + MTD LTR MaLR 3 418 -1 6 1426 233 253 0 75 chr11 110314807 110314995 -11528861 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1426 305 250 5 64 chr11 110315062 110315250 -11528606 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1426 229 300 79 35 chr11 110315385 110315499 -11528357 - L2c LINE L2 -240 3147 3029 6 1426 392 353 147 24 chr11 110315557 110315798 -11528058 - L2c LINE L2 -448 2971 2704 6 1426 243 103 0 0 chr11 110315798 110315837 -11528019 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 6 1426 392 353 147 24 chr11 110315837 110315969 -11527887 - L2c LINE L2 -716 2703 2554 6 1426 557 242 203 25 chr11 110316009 110316250 -11527606 + B4A SINE B4 1 284 -8 6 1426 360 0 0 0 chr11 110316300 110316340 -11527516 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1426 209 182 0 0 chr11 110316521 110316565 -11527291 - L2c LINE L2 -1233 2186 2143 6 1426 216 0 0 0 chr11 110316872 110316896 -11526960 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 6 1426 454 220 9 35 chr11 110316930 110317043 -11526813 - PB1D10 SINE Alu -7 110 1 6 1426 189 326 87 0 chr11 110317046 110317138 -11526718 - L2c LINE L2 -1600 1819 1720 6 1426 274 299 13 13 chr11 110317673 110317751 -11526105 - MTEa LTR MaLR -126 253 176 6 1426 297 0 0 0 chr11 110317756 110317789 -11526067 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 6 1426 1248 44 12 6 chr11 110317789 110317949 -11525907 - B2_Mm2 SINE B2 -34 161 1 6 1426 650 256 34 40 chr11 110317993 110318168 -11525688 - B3A SINE B2 -22 176 3 6 1426 643 282 50 11 chr11 110318168 110318342 -11525514 - MTEa LTR MaLR -198 181 1 6 1426 258 339 15 90 chr11 110318444 110318577 -11525279 + L2c LINE L2 3245 3367 -20 6 1426 249 139 0 0 chr11 110319560 110319603 -11524253 + (CACCAT)n Simple_repeat Simple_repeat 5 47 0 6 1426 285 224 29 29 chr11 110319620 110319689 -11524167 - ID4_ SINE ID -13 70 2 6 1426 24 67 0 0 chr11 110319770 110319815 -11524041 + AT_rich Low_complexity Low_complexity 1 45 0 6 1426 381 75 0 0 chr11 110320013 110320066 -11523790 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1426 770 287 134 38 chr11 110321865 110322037 -11521819 - MTEa LTR MaLR 0 379 204 6 1426 369 0 0 0 chr11 110322037 110322078 -11521778 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1426 770 287 134 38 chr11 110322078 110322249 -11521607 - MTEa LTR MaLR -176 203 4 6 1426 319 270 60 0 chr11 110322252 110322352 -11521504 + L1MC4 LINE L1 6677 6782 -1260 6 1426 471 296 12 54 chr11 110322533 110322677 -11521179 + Tigger5 DNA MER2_type 1 138 -2268 6 1426 197 86 0 54 chr11 110322677 110322714 -11521142 + (TATG)n Simple_repeat Simple_repeat 4 38 0 6 1426 471 296 12 54 chr11 110322714 110322737 -11521119 + Tigger5 DNA MER2_type 139 161 -2245 6 1426 456 19 0 0 chr11 110322744 110322797 -11521059 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1426 1082 265 11 19 chr11 110322807 110323072 -11520784 - B4A SINE B4 -29 263 1 6 1426 244 273 26 13 chr11 110323123 110323201 -11520655 + Tigger5 DNA MER2_type 2278 2356 -50 6 1426 1490 53 5 10 chr11 110323948 110324140 -11519716 + B2_Mm2 SINE B2 1 191 -4 6 1426 202 333 120 8 chr11 110324487 110324620 -11519236 + MIRb SINE MIR 12 159 -109 6 1426 183 42 0 0 chr11 110324829 110324853 -11519003 + (CAGT)n Simple_repeat Simple_repeat 2 25 0 6 1426 280 146 0 47 chr11 110324850 110324936 -11518920 + (TCTCTG)n Simple_repeat Simple_repeat 4 85 0 6 1426 378 61 0 0 chr11 110324941 110324990 -11518866 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1426 998 283 35 91 chr11 110325088 110325484 -11518372 + MTE2a LTR MaLR 6 379 0 6 1426 324 0 0 0 chr11 110325534 110325570 -11518286 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1426 387 300 30 23 chr11 110325681 110325814 -11518042 - ORR1E LTR MaLR -172 187 54 6 1426 232 190 0 23 chr11 110325849 110325892 -11517964 - B3A SINE B2 -156 42 1 6 1426 239 41 39 39 chr11 110326223 110326274 -11517582 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1426 609 82 0 0 chr11 110326530 110326627 -11517229 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 6 1426 225 0 0 0 chr11 110326625 110326650 -11517206 + (TCTCTG)n Simple_repeat Simple_repeat 3 27 0 6 1426 470 70 14 0 chr11 110326646 110326717 -11517139 + (TCCCC)n Simple_repeat Simple_repeat 4 75 0 6 1426 237 196 0 0 chr11 110326873 110326924 -11516932 + CT-rich Low_complexity Low_complexity 5 55 0 6 1426 302 134 15 0 chr11 110326946 110327013 -11516843 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 1426 386 179 173 6 chr11 110327071 110327193 -11516663 - B1_Mur3 SINE Alu 0 149 1 6 1426 251 54 0 26 chr11 110327327 110327365 -11516491 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1426 785 267 121 34 chr11 110327419 110327683 -11516173 + B4 SINE B4 2 288 -4 6 1426 303 136 0 0 chr11 110327717 110327776 -11516080 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1426 1632 142 0 11 chr11 110327934 110328211 -11515645 - Lx LINE L1 -1 6653 6380 6 1426 477 50 0 0 chr11 110328632 110328692 -11515164 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1426 592 281 113 20 chr11 110328705 110328908 -11514948 - B4A SINE B4 0 292 71 6 1426 566 251 145 20 chr11 110330397 110330645 -11513211 - L1MA5 LINE L1 -274 6026 5748 6 1426 219 196 32 25 chr11 110330647 110330804 -11513052 + (TA)n Simple_repeat Simple_repeat 1 158 0 6 1426 195 386 59 0 chr11 110332198 110332299 -11511557 + MIR SINE MIR 143 249 -13 6 1426 888 197 121 17 chr11 110332766 110332969 -11510887 + B3 SINE B2 9 212 -4 6 1426 197 247 12 0 chr11 110333037 110333118 -11510738 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1426 593 249 126 11 chr11 110333138 110333321 -11510535 - B3 SINE B2 -11 205 2 6 1426 324 0 0 0 chr11 110334050 110334086 -11509770 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1426 324 284 96 56 chr11 110334483 110334669 -11509187 - L1MC5 LINE L1 -53 7908 7713 6 1426 252 0 0 0 chr11 110334669 110334697 -11509159 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1426 324 284 96 56 chr11 110334697 110334708 -11509148 - L1MC5 LINE L1 -249 7712 7703 6 1426 381 281 29 52 chr11 110335328 110335501 -11508355 - HAL1-2a_MD LINE L1 -511 2513 2345 6 1426 440 269 59 55 chr11 110335512 110335952 -11507904 - RLTR15 LTR ERVK -32 327 17 6 1426 548 257 137 34 chr11 110335989 110336251 -11507605 - MT2A LTR ERVL -2 531 243 6 1426 227 286 0 0 chr11 110336256 110336319 -11507537 - MTEa LTR MaLR -316 63 1 6 1426 425 284 0 54 chr11 110336637 110336786 -11507070 - B3A SINE B2 -1 197 57 6 1426 279 79 0 0 chr11 110336802 110336840 -11507016 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 6 1426 724 174 15 0 chr11 110336846 110336978 -11506878 - B1_Mus1 SINE Alu -14 134 1 6 1426 315 206 0 16 chr11 110336979 110337043 -11506813 - B3 SINE B2 -153 63 1 6 1426 182 208 42 0 chr11 110337186 110337234 -11506622 - MER5B DNA MER1_type -1 177 128 6 1426 381 22 0 0 chr11 110337302 110337348 -11506508 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1426 225 0 0 0 chr11 110337348 110337372 -11506484 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 1426 30 0 0 0 chr11 110337571 110337601 -11506255 + AT_rich Low_complexity Low_complexity 1 30 0 7 1426 374 146 80 40 chr11 110337680 110337780 -11506076 + Lx5 LINE L1 6947 7050 0 7 1426 1178 288 21 16 chr11 110337821 110338198 -11505658 + MTE2b LTR MaLR 1 379 0 7 1426 420 233 17 22 chr11 110338414 110338594 -11505262 + CT-rich Low_complexity Low_complexity 2 180 0 7 1426 605 22 33 11 chr11 110339935 110340027 -11503829 + (TG)n Simple_repeat Simple_repeat 1 94 0 7 1426 318 123 0 0 chr11 110340239 110340296 -11503560 + (C)n Simple_repeat Simple_repeat 1 57 0 7 1426 784 239 11 16 chr11 110342176 110342367 -11501489 + B3 SINE B2 23 212 -4 7 1426 297 0 0 0 chr11 110343149 110343182 -11500674 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 7 1426 891 94 55 0 chr11 110343182 110343310 -11500546 - B1_Mus1 SINE Alu -13 135 1 7 1426 339 65 0 0 chr11 110344270 110344316 -11499540 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1426 324 0 0 0 chr11 110345260 110345296 -11498560 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1426 327 277 112 35 chr11 110345300 110345416 -11498440 - RSINE1 SINE B4 -33 132 8 7 1426 450 0 0 0 chr11 110345592 110345642 -11498214 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1426 1130 61 0 0 chr11 110345645 110345793 -11498063 - B2_Mm2 SINE B2 -46 149 2 7 1426 347 326 108 30 chr11 110345802 110346134 -11497722 - L1MD LINE L1 -1006 5140 4783 7 1426 192 245 0 0 chr11 110346230 110346283 -11497573 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 7 1426 658 274 32 46 chr11 110348445 110348663 -11495193 + B3A SINE B2 2 216 0 7 1426 1163 259 48 36 chr11 110349081 110349437 -11494419 - MTD LTR MaLR -55 364 5 7 1426 208 339 0 0 chr11 110349450 110349515 -11494341 + CT-rich Low_complexity Low_complexity 2 66 0 7 1426 22 0 0 0 chr11 110350061 110350083 -11493773 + AT_rich Low_complexity Low_complexity 1 22 0 7 1426 2655 269 44 22 chr11 110350179 110351070 -11492786 - RCHARR1 DNA MER1_type 0 974 65 7 1426 185 250 193 25 chr11 110351160 110351279 -11492577 - MIRb SINE MIR -16 252 114 7 1426 180 97 0 0 chr11 110352299 110352330 -11491526 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1426 390 69 0 0 chr11 110352433 110352491 -11491365 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1426 639 305 6 6 chr11 110352492 110352660 -11491196 - B3A SINE B2 -30 168 1 7 1426 1272 146 9 49 chr11 110353208 110353432 -11490424 - B3 SINE B2 0 216 2 7 1426 315 85 0 0 chr11 110354561 110354608 -11489248 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1426 1004 244 75 95 chr11 110354660 110355008 -11488848 - MTE2a LTR MaLR -36 343 3 7 1426 1321 87 31 31 chr11 110355090 110355281 -11488575 - B2_Mm2 SINE B2 -3 192 2 7 1426 249 83 0 0 chr11 110356346 110356382 -11487474 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1426 295 259 64 9 chr11 110356604 110356713 -11487143 - B4A SINE B4 -139 153 39 7 1426 315 0 0 0 chr11 110356713 110356748 -11487108 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1426 649 240 19 0 chr11 110356812 110356966 -11486890 - B3A SINE B2 -41 157 1 7 1426 407 19 0 19 chr11 110357078 110357131 -11486725 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1426 24 0 0 0 chr11 110357373 110357397 -11486459 + AT_rich Low_complexity Low_complexity 1 24 0 7 1426 749 279 30 137 chr11 110357996 110358331 -11485525 - MLT1A0 LTR MaLR -12 353 57 7 1426 1246 46 109 0 chr11 110358331 110358506 -11485350 - B2_Mm2 SINE B2 -1 194 1 7 1426 749 279 30 137 chr11 110358506 110358565 -11485291 - MLT1A0 LTR MaLR -309 56 1 7 1426 290 87 22 0 chr11 110359639 110359685 -11484171 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 7 1426 786 263 49 0 chr11 110359762 110359967 -11483889 - ID_B1 SINE B4 -8 216 2 7 1426 23 0 0 0 chr11 110360292 110360315 -11483541 + AT_rich Low_complexity Low_complexity 1 23 0 7 1426 1040 288 27 49 chr11 110361252 110361621 -11482235 + MTE2a LTR MaLR 2 362 -17 7 178 389 279 132 19 chr11 110362568 110362773 -11481083 - Lx8 LINE L1 -231 7242 7015 7 1427 523 308 102 32 chr11 110362861 110363234 -11480622 - L1M2 LINE L1 -462 5418 5020 7 1427 1165 232 86 26 chr11 110363381 110363705 -11480151 - ORR1D2 LTR MaLR 0 370 29 7 1427 414 0 0 0 chr11 110363705 110363751 -11480105 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1427 1165 232 86 26 chr11 110363751 110363775 -11480081 - ORR1D2 LTR MaLR -342 28 1 7 1427 225 125 54 0 chr11 110363920 110363976 -11479880 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1427 733 299 91 0 chr11 110364046 110364310 -11479546 - B4 SINE B4 -3 289 2 7 1427 186 103 0 0 chr11 110364676 110364705 -11479151 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 7 1427 233 209 15 0 chr11 110365125 110365192 -11478664 + CT-rich Low_complexity Low_complexity 3 70 0 7 1427 556 237 28 14 chr11 110365225 110365366 -11478490 - B1F SINE Alu -5 144 2 7 1427 293 346 0 0 chr11 110365654 110365732 -11478124 + ID4 SINE ID 1 78 -5 7 1427 649 237 21 7 chr11 110365832 110365972 -11477884 - RSINE1 SINE B4 -22 143 2 7 1427 383 284 154 33 chr11 110366438 110366620 -11477236 - MER20 DNA MER1_type -15 204 1 7 1427 468 0 0 0 chr11 110367766 110367818 -11476038 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1427 509 242 15 22 chr11 110368267 110368402 -11475454 - RSINE1 SINE B4 -31 134 1 7 1427 886 278 98 90 chr11 110368947 110369323 -11474533 - MTE2a LTR MaLR 0 379 1 7 1427 553 260 111 44 chr11 110369563 110369744 -11474112 + B3A SINE B2 1 193 -5 7 1427 1220 74 0 0 chr11 110369764 110369912 -11473944 + B1_Mus1 SINE Alu 1 148 0 7 1427 1414 98 0 5 chr11 110370169 110370363 -11473493 + B2_Mm2 SINE B2 1 193 -2 7 1427 419 268 94 59 chr11 110371251 110371404 -11472452 - MER58A DNA MER1_type -15 209 49 7 1427 1840 182 63 3 chr11 110371404 110371751 -11472105 - ORR1D2 LTR MaLR 0 370 3 7 1427 419 268 94 59 chr11 110371751 110371799 -11472057 - MER58A DNA MER1_type -176 48 1 7 1427 240 100 0 0 chr11 110373451 110373491 -11470365 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1427 314 132 19 0 chr11 110375018 110375071 -11468785 - HAL1-3A_ME LINE L1 -829 2029 1976 7 1427 713 271 50 58 chr11 110375877 110376155 -11467701 + B4 SINE B4 2 277 -15 7 1427 400 111 14 14 chr11 110376683 110376756 -11467100 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 7 1427 561 243 10 138 chr11 110377397 110377593 -11466263 + B4A SINE B4 122 292 0 7 1427 213 247 39 13 chr11 110377593 110377671 -11466185 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1427 783 0 0 0 chr11 110378476 110378563 -11465293 + (TCTCC)n Simple_repeat Simple_repeat 4 90 0 7 1427 781 212 0 0 chr11 110378571 110378717 -11465139 - B1_Mus1 SINE Alu 0 148 3 7 1427 378 251 77 104 chr11 110378944 110379166 -11464690 - MER58A DNA MER1_type -8 216 1 7 1427 518 218 106 82 chr11 110379645 110379815 -11464041 - B3A SINE B2 -16 182 9 7 1427 1056 244 0 22 chr11 110379844 110380066 -11463790 - ID_B1 SINE B4 -7 217 1 7 1427 225 0 0 0 chr11 110380642 110380667 -11463189 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 7 1427 306 0 0 0 chr11 110380977 110381011 -11462845 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 7 1427 409 264 15 23 chr11 110381091 110381223 -11462633 + B3 SINE B2 65 195 -21 7 1427 692 250 110 20 chr11 110382072 110382356 -11461500 - Lx7 LINE L1 -1553 5920 5620 7 1427 211 0 0 81 chr11 110383259 110383296 -11460560 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 7 1427 348 77 0 0 chr11 110384027 110384079 -11459777 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1427 990 264 115 12 chr11 110384550 110384929 -11458927 - MTD LTR MaLR -5 416 2 7 1427 198 0 0 0 chr11 110384955 110384977 -11458879 + (CAGAA)n Simple_repeat Simple_repeat 1 22 0 7 1427 604 245 46 7 chr11 110385697 110385849 -11458007 - MTEa LTR MaLR -1 378 221 7 1427 455 297 40 0 chr11 110385911 110386059 -11457797 - MTEa LTR MaLR -155 224 71 7 1427 29 0 0 0 chr11 110386342 110386371 -11457485 + AT_rich Low_complexity Low_complexity 1 29 0 7 1427 189 0 0 0 chr11 110386836 110386857 -11456999 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1427 386 309 69 64 chr11 110386910 110387083 -11456773 - B4 SINE B4 0 292 119 7 1427 447 261 46 98 chr11 110387143 110387296 -11456560 - RSINE1 SINE B4 -11 154 10 7 1427 215 228 0 123 chr11 110387311 110387376 -11456480 - B4 SINE B4 -205 87 31 7 1427 28 29 0 0 chr11 110387734 110387769 -11456087 + AT_rich Low_complexity Low_complexity 1 35 0 7 1427 1163 239 45 143 chr11 110387937 110388357 -11455499 - MTEa LTR MaLR 0 379 1 7 1427 201 140 35 17 chr11 110388419 110388477 -11455379 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1427 1859 76 0 0 chr11 110388908 110389158 -11454698 + Lx LINE L1 6405 6654 0 7 1427 222 247 106 11 chr11 110389320 110389341 -11454515 - B2_Mm2 SINE B2 -92 103 1 7 1427 385 206 0 0 chr11 110389341 110389414 -11454442 - B4A SINE B4 -219 73 1 7 1427 861 252 27 60 chr11 110389979 110390279 -11453577 - B4 SINE B4 -1 291 2 7 1427 182 98 0 47 chr11 110390806 110390849 -11453007 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 7 1427 511 255 20 52 chr11 110392502 110392655 -11451201 - B3A SINE B2 -47 151 4 7 1427 2906 49 3 0 chr11 110392771 110393116 -11450740 - ORR1A1 LTR MaLR 0 346 1 7 1427 476 337 19 72 chr11 110393304 110393512 -11450344 + B4 SINE B4 83 279 -13 7 1427 1071 45 0 0 chr11 110393543 110393676 -11450180 + (TCTCCC)n Simple_repeat Simple_repeat 1 133 0 7 1427 1396 79 0 41 chr11 110394108 110394305 -11449551 - B2_Mm2 SINE B2 -6 189 1 7 1427 608 210 63 0 chr11 110394787 110394930 -11448926 - ORR1C2 LTR MaLR 0 384 233 8 1427 528 16 0 0 chr11 110394961 110395022 -11448834 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 8 1427 292 384 64 57 chr11 110395408 110395673 -11448183 + Tigger7 DNA MER2_type 3 269 -2222 8 1427 702 259 78 42 chr11 110395692 110395999 -11447857 + Tigger7 DNA MER2_type 2134 2451 -40 8 1427 22 0 0 0 chr11 110397834 110397856 -11446000 + AT_rich Low_complexity Low_complexity 1 22 0 8 1427 754 244 74 25 chr11 110397959 110398161 -11445695 - B3 SINE B2 0 216 5 8 1427 661 279 53 14 chr11 110399261 110399468 -11444388 + B3 SINE B2 2 216 0 8 1427 414 0 0 0 chr11 110400066 110400112 -11443744 + (TTCTC)n Simple_repeat Simple_repeat 5 50 0 8 1427 582 114 0 0 chr11 110400112 110400200 -11443656 + (TCCCC)n Simple_repeat Simple_repeat 4 91 0 8 1427 516 59 0 0 chr11 110400201 110400269 -11443587 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 8 1427 4064 131 60 19 chr11 110400270 110400384 -11443472 - Lx LINE L1 -11 6643 6536 8 1427 183 80 0 0 chr11 110400384 110400409 -11443447 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 8 1427 4064 131 60 19 chr11 110400409 110400964 -11442892 - Lx LINE L1 -119 6535 5949 8 1427 222 341 85 0 chr11 110400989 110401118 -11442738 - MIR SINE MIR -109 153 14 8 1427 361 311 110 18 chr11 110401649 110401813 -11442043 - B4 SINE B4 -111 181 3 8 1427 922 186 42 16 chr11 110401838 110402029 -11441827 - B3A SINE B2 -1 197 2 8 1427 1322 104 16 0 chr11 110402176 110402359 -11441497 + B2_Mm2 SINE B2 2 187 -8 8 1427 944 116 13 19 chr11 110402788 110403326 -11440530 + (TG)n Simple_repeat Simple_repeat 1 534 0 8 1427 279 0 0 0 chr11 110403913 110403944 -11439912 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 1427 180 0 0 0 chr11 110404075 110404095 -11439761 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1427 238 279 94 87 chr11 110404096 110404245 -11439611 - RSINE1 SINE B4 -13 152 3 8 1427 711 155 38 23 chr11 110404277 110404409 -11439447 - B1_Mm SINE Alu -12 135 2 8 1427 291 376 57 0 chr11 110404438 110404579 -11439277 + B1F1 SINE Alu 1 149 0 8 1427 537 220 55 9 chr11 110405400 110405573 -11438283 + MTD LTR MaLR 17 218 -201 8 1427 433 316 82 2 chr11 110406454 110406651 -11437205 - B3A SINE B2 -2 214 1 8 1427 213 65 0 0 chr11 110407033 110407064 -11436792 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1427 1143 68 0 14 chr11 110407144 110407292 -11436564 - B1_Mus1 SINE Alu 0 148 3 8 1427 278 300 44 26 chr11 110407877 110407990 -11435866 + PB1D10 SINE Alu 3 117 0 8 1427 748 63 261 0 chr11 110408914 110409025 -11434831 + B1_Mus1 SINE Alu 2 141 -7 8 1427 429 20 0 0 chr11 110409025 110409075 -11434781 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 8 1427 266 304 31 16 chr11 110409131 110409258 -11434598 - Lx7 LINE L1 -5 7691 7563 8 1427 1892 230 19 90 chr11 110409317 110409699 -11434157 - Lx7 LINE L1 -286 7410 7065 8 1427 1187 55 0 0 chr11 110409699 110409845 -11434011 - B1_Mus2 SINE Alu 0 147 2 8 1427 1892 230 19 90 chr11 110409845 110409996 -11433860 - Lx7 LINE L1 -632 7064 6915 8 1427 299 270 27 0 chr11 110410123 110410197 -11433659 + B3A SINE B2 44 119 -79 8 1427 285 29 0 0 chr11 110410241 110410275 -11433581 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1427 961 229 10 0 chr11 110411935 110412136 -11431720 - B3 SINE B2 -13 203 1 8 1427 4691 189 59 44 chr11 110413443 110414372 -11429484 + Lx7 LINE L1 6613 7569 -127 8 1427 1135 58 0 13 chr11 110414372 110414530 -11429326 + (TTC)n Simple_repeat Simple_repeat 1 156 0 8 1427 4691 189 59 44 chr11 110414530 110414668 -11429188 + Lx7 LINE L1 7570 7696 0 8 1427 513 84 0 0 chr11 110414753 110414824 -11429032 + (CCAA)n Simple_repeat Simple_repeat 2 72 0 8 1427 1208 48 7 0 chr11 110415094 110415239 -11428617 - B1_Mm SINE Alu -1 146 1 8 1427 429 233 17 25 chr11 110415365 110415484 -11428372 - B3A SINE B2 0 198 81 8 1427 321 185 0 0 chr11 110415520 110415585 -11428271 + (TA)n Simple_repeat Simple_repeat 1 65 0 8 1427 324 245 153 7 chr11 110415585 110415729 -11428127 - L1MA8 LINE L1 -27 6264 6100 8 1427 1091 237 51 4 chr11 110417838 110418092 -11425764 - Lx9 LINE L1 -1021 6623 6358 8 1427 543 101 0 0 chr11 110418104 110418183 -11425673 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1427 1049 150 77 10 chr11 110418205 110418413 -11425443 + RLTR11A LTR ERVK 307 528 0 8 1427 1648 274 96 72 chr11 110418413 110419084 -11424772 + Lx9 LINE L1 6773 7457 -187 8 1427 495 0 0 0 chr11 110419084 110419139 -11424717 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 8 1427 1648 274 96 72 chr11 110419139 110419300 -11424556 + Lx9 LINE L1 7458 7625 -19 8 1427 362 285 202 0 chr11 110419861 110420029 -11423827 + ID_B1 SINE B4 2 203 -21 8 1427 1451 56 21 9 chr11 110420313 110420845 -11423011 + (TCTA)n Simple_repeat Simple_repeat 1 537 0 8 1427 413 350 28 11 chr11 110421727 110421909 -11421947 + MER58A DNA MER1_type 40 224 0 8 1427 246 284 58 45 chr11 110422303 110422458 -11421398 - L1MC4 LINE L1 -758 7284 7128 8 1427 881 283 58 25 chr11 110422513 110422789 -11421067 - B4A SINE B4 0 292 8 8 1427 320 319 0 17 chr11 110422926 110423041 -11420815 + (TG)n Simple_repeat Simple_repeat 2 114 0 8 1427 1109 82 7 0 chr11 110423127 110423273 -11420583 + B1_Mus1 SINE Alu 2 148 0 8 1427 315 0 0 0 chr11 110424022 110424057 -11419799 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 1427 799 258 31 16 chr11 110425476 110425669 -11418187 - B3A SINE B2 -1 197 2 8 1427 4881 49 0 0 chr11 110425786 110426373 -11417483 + L1_Mus1 LINE L1 5980 6566 -1 8 1427 1412 71 16 11 chr11 110428224 110428410 -11415446 + B2_Mm2 SINE B2 2 188 -7 8 1427 469 304 0 0 chr11 110428651 110428763 -11415093 - PB1D9 SINE Alu -8 112 1 8 1427 1922 251 73 30 chr11 110428784 110429117 -11414739 - L1_Rod LINE L1 -3912 1935 1586 8 1427 1053 44 0 0 chr11 110429117 110429252 -11414604 + (TG)n Simple_repeat Simple_repeat 2 136 0 8 1427 1922 266 71 39 chr11 110429252 110429907 -11413949 - L1_Rod LINE L1 -4262 1585 900 8 1427 677 245 42 75 chr11 110431529 110431794 -11412062 - MER34A LTR ERV1 -58 513 258 8 1427 737 347 33 55 chr11 110431811 110432065 -11411791 - MER44B DNA MER2_type -4 546 298 8 1427 5913 41 1 4 chr11 110432065 110432771 -11411085 + L1Md_F2 LINE L1 5867 6570 -12 8 1427 737 347 33 55 chr11 110432771 110432784 -11411072 - MER44B DNA MER2_type -253 297 288 8 1427 225 0 0 0 chr11 110432784 110432809 -11411047 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1427 737 347 33 55 chr11 110432809 110432937 -11410919 - MER44B DNA MER2_type -263 287 160 8 1427 258 315 26 18 chr11 110432974 110433087 -11410769 + MLT1A1 LTR MaLR 1 114 -294 8 1427 342 210 148 0 chr11 110433396 110433477 -11410379 - MER44B DNA MER2_type -442 108 16 8 1427 445 224 132 26 chr11 110433523 110433674 -11410182 - MER34A LTR ERV1 -377 194 28 8 1427 504 139 178 0 chr11 110435164 110435265 -11408591 - RLTR24 LTR ERV1 0 529 411 8 1427 1247 257 137 17 chr11 110435463 110435764 -11408092 - MT2A LTR ERVL -1 532 202 8 1427 210 37 0 0 chr11 110435764 110435791 -11408065 + (CAAG)n Simple_repeat Simple_repeat 4 30 0 8 1427 1247 257 137 17 chr11 110435791 110435964 -11407892 - MT2A LTR ERVL -332 201 2 8 1427 222 204 0 0 chr11 110436573 110436622 -11407234 + A-rich Low_complexity Low_complexity 2 50 0 8 1427 1378 274 40 31 chr11 110436629 110437078 -11406778 + Lx8 LINE L1 7019 7471 -2 8 1427 310 234 36 108 chr11 110437255 110437394 -11406462 + B3A SINE B2 70 198 0 8 1427 513 47 0 0 chr11 110437480 110437544 -11406312 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1427 521 211 143 38 chr11 110437772 110437905 -11405951 + B1_Mur1 SINE Alu 2 148 -1 8 1427 216 94 57 0 chr11 110438963 110439016 -11404840 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 8 1427 1254 192 14 0 chr11 110439435 110439648 -11404208 - B3 SINE B2 0 216 1 8 1427 980 82 0 0 chr11 110439695 110439830 -11404026 - B1_Mus1 SINE Alu 0 148 14 8 1427 441 251 65 90 chr11 110439697 110439869 -11403987 - B4 SINE B4 -69 223 57 8 1427 583 271 62 46 chr11 110439869 110440109 -11403747 + B4A SINE B4 3 246 -46 8 1427 347 73 0 18 chr11 110440177 110440233 -11403623 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1427 373 225 126 0 chr11 110440682 110440793 -11403063 + L1MB1 LINE L1 5945 6069 -120 8 1427 203 300 0 0 chr11 110441365 110441415 -11402441 + C-rich Low_complexity Low_complexity 6 55 0 8 1427 1493 282 15 28 chr11 110441455 110441922 -11401934 - Lx9 LINE L1 -272 7372 6912 8 1427 236 326 81 10 chr11 110443778 110443877 -11399979 - MIRb SINE MIR -87 181 76 8 1427 1015 273 55 33 chr11 110444259 110444532 -11399324 + B4A SINE B4 2 280 -12 8 1427 306 210 15 88 chr11 110444545 110444613 -11399243 + 5S rRNA rRNA 1 63 -58 8 1427 1376 45 22 22 chr11 110444600 110444783 -11399073 + MTB LTR MaLR 218 400 0 8 1427 591 40 0 0 chr11 110444795 110444869 -11398987 + (TC)n Simple_repeat Simple_repeat 1 74 0 8 1427 288 0 0 0 chr11 110444869 110444900 -11398956 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1427 675 337 49 27 chr11 110444935 110445249 -11398607 - MLT1F2 LTR MaLR -60 567 177 8 1427 270 259 0 33 chr11 110445280 110445340 -11398516 + B1_Mus2 SINE Alu 2 59 -88 8 1427 591 224 0 15 chr11 110445340 110445476 -11398380 + (CAGAGA)n Simple_repeat Simple_repeat 5 138 0 8 1427 450 239 0 0 chr11 110445482 110445658 -11398198 + GA-rich Low_complexity Low_complexity 3 178 0 8 1427 519 208 21 0 chr11 110445738 110445834 -11398022 + B1_Mur1 SINE Alu 42 139 -10 8 1427 236 254 0 16 chr11 110445863 110445927 -11397929 + L1MB7 LINE L1 4936 4998 -1148 8 1427 909 295 33 22 chr11 110446041 110446315 -11397541 - B4 SINE B4 -11 281 5 8 1427 267 271 138 6 chr11 110446334 110446501 -11397355 + L1MB7 LINE L1 5133 5321 -825 8 1427 4673 201 77 15 chr11 110446499 110447523 -11396333 + Lx5 LINE L1 5959 7046 -4 8 1427 1281 238 91 6 chr11 110447593 110447923 -11395933 + Lx6 LINE L1 7097 7454 -6 8 1427 253 247 0 115 chr11 110447907 110448003 -11395853 + L1MB7 LINE L1 5347 5431 -753 8 1427 803 315 96 35 chr11 110448061 110448542 -11395314 + L1MB7 LINE L1 5449 5958 -226 8 1427 231 233 43 22 chr11 110448624 110448716 -11395140 - Lx2B LINE L1 -7 6993 6900 8 1427 2135 98 0 0 chr11 110448713 110448999 -11394857 + L1_Mur2 LINE L1 4656 4941 -936 8 1427 453 255 42 7 chr11 110449003 110449145 -11394711 + L1MB7 LINE L1 6031 6177 -7 8 1427 390 283 91 91 chr11 110450870 110451069 -11392787 + L1MC4 LINE L1 6931 7133 -909 8 1427 921 267 30 0 chr11 110451069 110451271 -11392585 + B3 SINE B2 3 210 -6 8 1427 390 283 91 91 chr11 110451271 110451312 -11392544 + L1MC4 LINE L1 7134 7171 -871 8 1427 2419 312 73 30 chr11 110451458 110452482 -11391374 + Lx8 LINE L1 6406 7473 0 9 1427 1364 263 59 72 chr11 110452815 110453442 -11390414 + L1MA8 LINE L1 5484 6101 -190 9 1427 189 0 0 0 chr11 110453507 110453528 -11390328 + (TG)n Simple_repeat Simple_repeat 1 21 0 9 1427 366 273 0 49 chr11 110454605 110454686 -11389170 - PB1D10 SINE Alu -15 102 26 9 1427 905 317 67 10 chr11 110454691 110455003 -11388853 - RMER15 LTR ERVL 0 575 246 9 1427 447 292 30 83 chr11 110455390 110455470 -11388386 + B4A SINE B4 128 207 -85 9 1427 840 236 127 147 chr11 110455470 110455857 -11387999 - MTE2a LTR MaLR 0 379 1 9 1427 447 292 30 83 chr11 110455857 110455944 -11387912 + B4A SINE B4 208 286 -6 9 1427 316 330 9 19 chr11 110457203 110457308 -11386548 + MIRb SINE MIR 35 138 -130 9 1427 1174 190 18 9 chr11 110458043 110458266 -11385590 + URR1A DNA MER1_type 1 225 -1 9 1427 506 57 14 0 chr11 110459162 110459232 -11384624 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 9 1427 876 293 60 22 chr11 110459289 110459558 -11384298 - B4 SINE B4 -13 279 1 9 1427 4802 111 52 44 chr11 110460490 110461292 -11382564 + RMER17D2 LTR ERVK 1 809 0 9 1427 287 104 21 0 chr11 110461292 110461340 -11382516 - MLT2C2 LTR ERVL 0 559 511 9 1427 349 327 29 0 chr11 110461353 110461457 -11382399 - MER2 DNA MER2_type 0 345 239 9 1427 237 414 100 0 chr11 110461715 110461855 -11382001 + LTR16C LTR ERVL 148 301 -188 9 1427 3356 56 13 0 chr11 110461864 110462259 -11381597 + MTB LTR MaLR 1 400 0 9 1427 298 233 17 0 chr11 110462329 110462389 -11381467 + LTR16C LTR ERVL 429 489 0 9 1427 431 141 0 13 chr11 110462748 110462827 -11381029 + (TCTG)n Simple_repeat Simple_repeat 3 80 0 9 1427 190 365 9 28 chr11 110462984 110463091 -11380765 + L3 LINE CR1 3564 3668 -821 9 1427 197 298 0 0 chr11 110463165 110463212 -11380644 + L3 LINE CR1 3834 3880 -609 9 1427 193 296 0 90 chr11 110463339 110463428 -11380428 + L3 LINE CR1 4047 4127 -362 9 1427 998 258 86 40 chr11 110463732 110463947 -11379909 + B4 SINE B4 2 223 -69 9 1427 423 0 0 0 chr11 110463947 110463994 -11379862 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 9 1427 998 258 86 40 chr11 110463994 110464056 -11379800 + B4 SINE B4 224 292 0 9 1427 296 219 12 0 chr11 110464056 110464138 -11379718 + (CA)n Simple_repeat Simple_repeat 1 83 0 9 1427 317 339 49 82 chr11 110464409 110464653 -11379203 + L2 LINE L2 2541 2776 -643 9 1427 402 272 118 68 chr11 110465153 110465296 -11378560 + Lx6 LINE L1 5162 5292 -588 9 1427 739 200 73 7 chr11 110465296 110465432 -11378424 - B1_Mus2 SINE Alu -2 145 1 9 1427 402 272 118 68 chr11 110465432 110465627 -11378229 + Lx6 LINE L1 5293 5517 -363 9 1427 714 62 0 0 chr11 110465798 110465894 -11377962 + (TC)n Simple_repeat Simple_repeat 1 96 0 9 1427 180 135 0 0 chr11 110465900 110465937 -11377919 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1427 713 252 78 19 chr11 110466046 110466252 -11377604 - ID_B1 SINE B4 -2 222 5 9 1427 1234 58 6 12 chr11 110467595 110467768 -11376088 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 9 1427 975 161 0 0 chr11 110467771 110467826 -11376030 + polypyrimidine Low_complexity Low_complexity 126 180 0 9 1427 410 0 0 20 chr11 110467826 110467877 -11375979 + (TTCCC)n Simple_repeat Simple_repeat 1 50 0 9 1427 975 161 0 0 chr11 110467877 110467894 -11375962 + polypyrimidine Low_complexity Low_complexity 109 125 0 9 1427 831 112 0 0 chr11 110467894 110468019 -11375837 + (TTCC)n Simple_repeat Simple_repeat 2 126 0 9 1427 975 161 0 0 chr11 110468019 110468125 -11375731 + polypyrimidine Low_complexity Low_complexity 3 108 0 9 1427 270 0 0 0 chr11 110468125 110468155 -11375701 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 9 1427 357 342 43 87 chr11 110468157 110468540 -11375316 + MTEb LTR MaLR 7 379 0 9 1427 379 132 0 171 chr11 110469019 110469101 -11374755 - U6 snRNA snRNA -36 71 4 9 1427 561 259 154 42 chr11 110469113 110469408 -11374448 + Lx6 LINE L1 6035 6604 -856 9 1427 258 261 143 36 chr11 110469425 110469648 -11374208 - ORR1C1 LTR MaLR -127 251 5 9 1427 549 283 65 78 chr11 110470001 110470323 -11373533 - MER121 Unknown Unknown -70 342 25 9 1427 316 319 49 28 chr11 110470510 110470652 -11373204 + L1MEf LINE L1 232 376 -6039 9 1427 22 35 0 0 chr11 110470658 110470687 -11373169 + AT_rich Low_complexity Low_complexity 1 29 0 9 1427 314 337 0 0 chr11 110470873 110470962 -11372894 + L1MEf LINE L1 557 645 -5770 9 1427 1013 129 7 13 chr11 110471177 110471326 -11372530 - B1_Mur4 SINE Alu 0 150 3 9 1427 555 223 2 0 chr11 110471433 110471550 -11372306 - PB1D7 SINE Alu -18 131 13 9 1427 542 306 89 66 chr11 110471632 110472283 -11371573 + L1MEf LINE L1 1012 1677 -4738 9 1427 881 290 40 106 chr11 110472325 110472730 -11371126 - MTE2a LTR MaLR -1 378 1 9 1427 981 169 14 12 chr11 110472784 110473103 -11370753 + GA-rich Low_complexity Low_complexity 1 319 0 9 1427 1256 84 6 0 chr11 110473103 110473282 -11370574 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 9 1427 678 291 119 17 chr11 110473670 110474236 -11369620 + L1MEf LINE L1 1833 2464 -3936 9 1427 358 393 32 14 chr11 110474256 110474540 -11369316 + L1MEf LINE L1 2729 3017 -3302 9 1427 845 125 5 27 chr11 110475063 110475289 -11368567 + CT-rich Low_complexity Low_complexity 1 220 0 9 1427 838 276 236 25 chr11 110475292 110475742 -11368114 + Lx8 LINE L1 6867 7411 -62 9 1427 252 279 196 38 chr11 110476294 110476529 -11367327 + L1MC LINE L1 4058 4329 -1817 9 1427 224 298 9 19 chr11 110476988 110477094 -11366762 + (TG)n Simple_repeat Simple_repeat 2 106 0 9 1427 1130 275 24 27 chr11 110478500 110478792 -11365064 - B4A SINE B4 -1 291 1 9 1427 688 282 0 21 chr11 110478828 110478973 -11364883 + RSINE1 SINE B4 2 143 -22 9 1427 209 218 51 13 chr11 110478980 110479059 -11364797 + (CAAT)n Simple_repeat Simple_repeat 3 84 0 9 1427 305 320 95 8 chr11 110479089 110479215 -11364641 - MER5A1 DNA MER1_type -29 137 1 9 1427 193 164 54 14 chr11 110480421 110480495 -11363361 + CT-rich Low_complexity Low_complexity 2 78 0 9 1427 297 318 106 43 chr11 110481235 110481537 -11362319 - L1MC4 LINE L1 -336 7625 7305 9 1427 1679 202 54 8 chr11 110481579 110481949 -11361907 + MTD LTR MaLR 1 387 -32 9 1427 3498 112 8 4 chr11 110481949 110482442 -11361414 + L1_Mus4 LINE L1 6133 6627 -9 9 1427 393 290 105 5 chr11 110482968 110483120 -11360736 - L1MC4 LINE L1 -1197 6845 6650 9 1427 241 290 126 36 chr11 110483122 110483233 -11360623 + B1_Mur3 SINE Alu 27 147 -2 9 1427 576 305 0 38 chr11 110483137 110483294 -11360562 + B4A SINE B4 130 280 -12 9 1427 335 276 86 0 chr11 110483677 110483782 -11360074 + PB1D7 SINE Alu 1 114 -6 9 1427 1059 282 103 19 chr11 110483968 110484337 -11359519 + MTD LTR MaLR 6 405 -14 9 1427 21 71 0 0 chr11 110484371 110484413 -11359443 + AT_rich Low_complexity Low_complexity 1 42 0 9 1427 1449 82 5 16 chr11 110484882 110485068 -11358788 + B2_Mm1a SINE B2 1 184 -9 9 1427 793 238 40 0 chr11 110485080 110485231 -11358625 + RSINE1 SINE B4 3 159 -6 9 1427 399 21 0 0 chr11 110485539 110485587 -11358269 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1427 475 310 138 56 chr11 110485829 110486209 -11357647 - RMER15 LTR ERVL 0 575 61 9 1427 1428 108 0 10 chr11 110486281 110486477 -11357379 - B2_Mm2 SINE B2 0 195 2 9 1427 1050 138 0 0 chr11 110486483 110486657 -11357199 + (TC)n Simple_repeat Simple_repeat 1 174 0 9 1427 248 164 57 19 chr11 110486698 110486804 -11357052 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 9 1427 744 74 0 0 chr11 110486953 110487061 -11356795 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 9 1427 212 297 16 0 chr11 110487294 110487358 -11356498 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1427 1004 257 68 22 chr11 110487368 110487646 -11356210 - B4 SINE B4 0 292 2 9 1427 230 318 64 27 chr11 110487733 110487843 -11356013 + MIR SINE MIR 128 241 -21 9 1427 396 40 0 0 chr11 110488993 110489043 -11354813 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1427 1695 186 92 101 chr11 110489781 110489959 -11353897 + MTC LTR MaLR 1 216 -205 9 1427 1664 145 0 4 chr11 110489959 110490216 -11353640 + Lx2 LINE L1 6742 6997 0 9 1427 1695 186 92 101 chr11 110490216 110490249 -11353607 + MTC LTR MaLR 217 224 -197 9 1427 387 0 0 0 chr11 110490249 110490292 -11353564 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1427 1695 186 92 101 chr11 110490292 110490504 -11353352 + MTC LTR MaLR 225 421 0 9 1427 248 349 71 12 chr11 110490536 110490552 -11353304 - B4A SINE B4 -119 173 86 9 1427 290 291 17 0 chr11 110490552 110490619 -11353237 - B1F2 SINE Alu -81 68 1 9 1427 678 304 47 0 chr11 110490673 110490844 -11353012 - MTD LTR MaLR -240 179 1 9 1427 3544 71 5 0 chr11 110490950 110491386 -11352470 - L1_Mus3 LINE L1 -4 6634 6197 9 1427 189 148 16 47 chr11 110493025 110493089 -11350767 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 9 1428 305 313 10 0 chr11 110493756 110493855 -11350001 + (TATG)n Simple_repeat Simple_repeat 1 100 0 9 1428 671 292 40 108 chr11 110493873 110494169 -11349687 - B4A SINE B4 -16 276 1 9 1428 265 341 29 21 chr11 110494831 110495021 -11348835 + MLT1I LTR MaLR 204 546 -3 9 1428 541 379 48 22 chr11 110495024 110495380 -11348476 - MLT1L LTR MaLR -153 457 93 9 1428 816 210 11 8 chr11 110495545 110495789 -11348067 + CT-rich Low_complexity Low_complexity 1 244 0 9 1428 301 54 0 0 chr11 110495790 110495827 -11348029 + (TTTCC)n Simple_repeat Simple_repeat 4 40 0 9 1428 192 152 0 0 chr11 110495831 110495864 -11347992 + CT-rich Low_complexity Low_complexity 4 36 0 9 1428 572 258 193 36 chr11 110495892 110496141 -11347715 - B4 SINE B4 -1 291 4 9 1428 1484 99 4 97 chr11 110496702 110496782 -11347074 + ORR1A2 LTR MaLR 94 168 -159 9 1428 1147 61 0 0 chr11 110496782 110496913 -11346943 + B1_Mm SINE Alu 5 135 -12 9 1428 351 0 0 0 chr11 110496914 110496953 -11346903 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1428 1484 99 4 97 chr11 110496953 110497128 -11346728 + ORR1A2 LTR MaLR 169 327 0 9 1428 949 61 7 22 chr11 110497367 110497502 -11346354 + Lx2A1 LINE L1 6874 7006 -2 9 1428 337 355 38 44 chr11 110497973 110498132 -11345724 + Charlie1a DNA MER1_type 2 159 -1296 9 1428 588 328 10 36 chr11 110498136 110498329 -11345527 + B4A SINE B4 97 284 -8 9 1428 240 35 0 0 chr11 110498366 110498395 -11345461 + (TC)n Simple_repeat Simple_repeat 1 29 0 9 1428 846 125 0 0 chr11 110498395 110498538 -11345318 + (CA)n Simple_repeat Simple_repeat 1 144 0 9 1428 711 293 194 30 chr11 110498554 110499120 -11344736 + Charlie1a DNA MER1_type 373 1031 -424 9 1428 198 0 0 0 chr11 110499132 110499154 -11344702 + (TA)n Simple_repeat Simple_repeat 2 23 0 9 1428 302 315 43 0 chr11 110500555 110500647 -11343209 + MTE2b LTR MaLR 1 96 -283 1 1428 283 211 0 0 chr11 110500647 110500699 -11343157 + MT2A LTR ERVL 57 108 -425 2 1428 301 231 0 15 chr11 110500736 110500802 -11343054 + MTEb LTR MaLR 315 379 0 3 1428 297 0 0 0 chr11 110501313 110501346 -11342510 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1428 434 323 45 15 chr11 110501346 110501478 -11342378 - RSINE1 SINE B4 -26 139 4 5 1428 549 100 0 0 chr11 110502327 110502417 -11341439 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 1428 1204 248 55 50 chr11 110502422 110502873 -11340983 - MT2A LTR ERVL -69 464 1 7 1428 319 271 42 0 chr11 110502917 110503035 -11340821 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 8 1428 554 305 168 10 chr11 110503177 110503379 -11340477 - B4A SINE B4 -57 235 2 9 1428 1410 90 0 0 chr11 110505135 110505323 -11338533 - L1_Mus3 LINE L1 -489 6149 5962 1 1428 3602 68 28 4 chr11 110505323 110505783 -11338073 + L1_Mus3 LINE L1 6168 6638 0 1 1428 279 0 0 0 chr11 110505816 110505847 -11338009 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1428 4349 92 60 21 chr11 110506863 110507475 -11336381 - Lx3C LINE L1 -2 6974 6339 1 1428 552 74 0 25 chr11 110507777 110507865 -11335991 + L1Md_F3 LINE L1 5526 5614 -560 1 1428 9083 27 2 1 chr11 110507866 110508863 -11334993 + L1Md_F3 LINE L1 5587 6584 0 1 1428 22 0 0 0 chr11 110509270 110509292 -11334564 + AT_rich Low_complexity Low_complexity 1 22 0 1 1428 1474 193 93 0 chr11 110509292 110509603 -11334253 - Lx5 LINE L1 -4 7046 6707 1 1428 1578 233 107 28 chr11 110509629 110510058 -11333798 - Lx2B LINE L1 -10 6990 6528 1 1428 450 49 0 0 chr11 110510414 110510475 -11333381 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1428 718 255 73 87 chr11 110511606 110511894 -11331962 - B4 SINE B4 0 292 9 1 1428 699 288 21 70 chr11 110512064 110512307 -11331549 - B4A SINE B4 -60 232 2 1 1428 249 338 82 34 chr11 110512507 110512654 -11331202 + MIR SINE MIR 1 154 -108 2 1428 181 277 0 21 chr11 110512897 110512945 -11330911 - L3 LINE CR1 -1720 2769 2723 2 1428 710 270 49 45 chr11 110513940 110514184 -11329672 - ORR1E LTR MaLR -1 358 114 2 1428 756 324 5 37 chr11 110514287 110514505 -11329351 - B4A SINE B4 0 292 82 2 1428 900 259 18 36 chr11 110514517 110514737 -11329119 - B3 SINE B2 0 216 1 2 1428 657 0 0 0 chr11 110515840 110515913 -11327943 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 1428 538 335 52 99 chr11 110516023 110516257 -11327599 - ORR1E LTR MaLR -5 354 134 2 1428 593 270 75 25 chr11 110516257 110516458 -11327398 - B3 SINE B2 -4 212 2 2 1428 538 335 52 99 chr11 110516458 110516587 -11327269 - ORR1E LTR MaLR -226 133 9 2 1428 387 0 0 0 chr11 110516877 110516920 -11326936 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1428 289 362 114 34 chr11 110517696 110518048 -11325808 + MamRep605 Unknown Unknown 87 466 -410 2 1428 232 289 26 13 chr11 110518759 110518836 -11325020 - ORR1E LTR MaLR -119 240 163 3 1428 203 237 0 0 chr11 110518836 110518874 -11324982 + G-rich Low_complexity Low_complexity 1 38 0 3 1428 641 217 71 88 chr11 110518925 110519107 -11324749 - ORR1E LTR MaLR -179 180 2 3 1428 224 350 12 0 chr11 110520274 110520354 -11323502 - RSINE1 SINE B4 0 165 85 3 1428 227 338 98 64 chr11 110520366 110520607 -11323249 - RSINE1 SINE B4 -50 242 2 3 1428 195 42 0 0 chr11 110521206 110521230 -11322626 + (TCC)n Simple_repeat Simple_repeat 2 25 0 3 1428 462 305 17 20 chr11 110521688 110521926 -11321930 + CT-rich Low_complexity Low_complexity 1 237 0 3 1428 389 328 7 81 chr11 110522214 110522350 -11321506 - ID_B1 SINE B4 -6 218 93 3 1428 207 0 0 0 chr11 110522384 110522407 -11321449 + (TTG)n Simple_repeat Simple_repeat 1 23 0 3 1428 582 262 50 70 chr11 110522744 110522945 -11320911 - B3 SINE B2 -14 202 6 3 1428 185 132 0 26 chr11 110523623 110523662 -11320194 + A-rich Low_complexity Low_complexity 5 42 0 3 1428 1051 285 62 7 chr11 110525225 110525501 -11318355 + B4 SINE B4 2 292 0 4 1428 292 312 25 19 chr11 110525873 110526030 -11317826 - L1MB2 LINE L1 -8 6163 6006 4 1428 841 211 127 67 chr11 110526333 110526632 -11317224 + RMER20B LTR ERVK 96 412 -215 4 1428 242 258 102 92 chr11 110526656 110526754 -11317102 + RMER20B LTR ERVK 519 617 -10 4 1428 326 373 0 0 chr11 110526790 110526908 -11316948 - Lx8 LINE L1 -274 7199 7082 4 1428 1670 308 146 23 chr11 110527251 110527587 -11316269 + Lx8 LINE L1 6463 6797 -676 4 1428 1082 107 6 0 chr11 110527587 110527755 -11316101 + (TTC)n Simple_repeat Simple_repeat 1 169 0 4 1428 1670 308 146 23 chr11 110527755 110528318 -11315538 + Lx8 LINE L1 6798 7472 -1 4 1428 22 35 0 0 chr11 110528346 110528375 -11315481 + AT_rich Low_complexity Low_complexity 1 29 0 4 1428 208 293 0 13 chr11 110528438 110528514 -11315342 + (CATA)n Simple_repeat Simple_repeat 2 76 0 4 1428 443 138 11 0 chr11 110528520 110528607 -11315249 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1428 219 356 0 0 chr11 110528609 110528710 -11315146 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 4 1428 392 354 75 79 chr11 110529678 110530160 -11313696 - MLT1M LTR MaLR 0 672 193 5 1428 1450 5 5 24 chr11 110530165 110530372 -11313484 + (TCTA)n Simple_repeat Simple_repeat 1 202 0 5 1428 864 277 18 9 chr11 110530501 110530723 -11313133 - ID_B1 SINE B4 0 224 1 5 1428 396 151 10 31 chr11 110531817 110531913 -11311943 + CT-rich Low_complexity Low_complexity 4 97 0 5 1428 928 256 52 0 chr11 110532840 110533051 -11310805 - ID_B1 SINE B4 -2 222 1 5 1428 862 252 19 34 chr11 110533300 110533505 -11310351 - B3 SINE B2 -14 202 1 5 1428 271 155 48 65 chr11 110536716 110536778 -11307078 - MamGypLTR2 LTR Gypsy -255 934 874 5 1428 279 366 10 0 chr11 110537079 110537180 -11306676 - MER3 DNA MER1_type -101 108 7 5 1428 734 248 132 64 chr11 110537956 110538236 -11305620 - RMER15-int LTR ERVL -64 4935 4637 5 1428 201 39 0 0 chr11 110538237 110538263 -11305593 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1428 758 182 7 0 chr11 110538265 110538419 -11305437 + CT-rich Low_complexity Low_complexity 2 156 0 6 1428 7156 266 85 59 chr11 110538567 110540889 -11302967 - RMER15-int LTR ERVL -538 4461 2074 5 1428 609 14 0 0 chr11 110540889 110540959 -11302897 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1428 7156 266 85 59 chr11 110540959 110541271 -11302585 - RMER15-int LTR ERVL -2926 2073 1755 5 1428 336 24 0 0 chr11 110541271 110541312 -11302544 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1428 7156 266 85 59 chr11 110541312 110541433 -11302423 - RMER15-int LTR ERVL -3245 1754 1634 5 1428 709 290 78 63 chr11 110541700 110542112 -11301744 - RMER15-int LTR ERVL -3367 1632 1215 5 1428 662 349 52 40 chr11 110542138 110542751 -11301105 - RMER15-int LTR ERVL -4235 764 4 5 1428 514 342 8 26 chr11 110542761 110542995 -11300861 - RMER15 LTR ERVL -14 561 332 5 1428 471 18 0 0 chr11 110543606 110543662 -11300194 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 6 1428 520 298 32 58 chr11 110544325 110544514 -11299342 + B3A SINE B2 1 184 -14 6 1428 206 174 0 21 chr11 110544523 110544570 -11299286 + GA-rich Low_complexity Low_complexity 3 48 0 6 1428 1154 262 43 58 chr11 110544888 110545289 -11298567 + MTE2a LTR MaLR 3 379 0 6 1428 2214 145 8 11 chr11 110545707 110546063 -11297793 - Lx2B LINE L1 -868 6132 5778 6 1428 954 147 0 12 chr11 110546069 110546234 -11297622 + Lx2B LINE L1 6838 7000 0 6 1428 792 272 14 46 chr11 110546434 110546553 -11297303 - B3 SINE B2 -7 209 96 6 1428 3298 74 15 0 chr11 110546553 110546947 -11296909 - MTB LTR MaLR 0 400 1 7 1428 792 272 14 46 chr11 110546947 110547043 -11296813 - B3 SINE B2 -121 95 1 6 1428 200 397 41 0 chr11 110547181 110547302 -11296554 - MIRb SINE MIR -124 144 19 7 1428 400 289 95 34 chr11 110547959 110548106 -11295750 + MLT1D LTR MaLR 3 158 -347 7 1428 259 305 31 71 chr11 110549822 110549949 -11293907 + B4 SINE B4 2 123 -169 7 1428 540 30 0 0 chr11 110550873 110550939 -11292917 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1428 255 256 10 62 chr11 110550956 110551052 -11292804 + (CATA)n Simple_repeat Simple_repeat 1 91 0 7 1428 1116 355 68 60 chr11 110551054 110551600 -11292256 + Zaphod DNA Tip100 66 615 -3416 7 1428 366 241 33 44 chr11 110551699 110551790 -11292066 - PB1D7 SINE Alu -7 113 24 7 1428 701 347 102 13 chr11 110552083 110552536 -11291320 - Lx8 LINE L1 -58 7415 6923 7 1428 273 57 0 0 chr11 110555063 110555098 -11288758 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 7 1428 1347 102 0 0 chr11 110555100 110555277 -11288579 - B2_Mm2 SINE B2 -18 177 1 8 1428 277 274 18 0 chr11 110555747 110555924 -11287932 + CT-rich Low_complexity Low_complexity 1 180 0 8 1428 465 221 28 0 chr11 110556336 110556481 -11287375 + Lx9 LINE L1 7486 7634 -10 8 1428 2767 164 12 16 chr11 110556839 110557346 -11286510 + RLTR16 LTR ERVK 1 505 0 8 1428 348 271 47 94 chr11 110557985 110558091 -11285765 + ID_B1 SINE B4 93 193 -31 8 1428 405 0 0 0 chr11 110558127 110558172 -11285684 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 8 1428 696 24 0 0 chr11 110560123 110560205 -11283651 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 8 1428 279 0 0 0 chr11 110560973 110561004 -11282852 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1428 430 83 92 0 chr11 110561004 110561124 -11282732 + GA-rich Low_complexity Low_complexity 2 132 0 8 1428 1030 253 129 43 chr11 110561167 110561493 -11282363 + MTD LTR MaLR 45 398 -21 8 1428 504 357 76 14 chr11 110561792 110562082 -11281774 + Helitron3Na_Mam RC Helitron 81 388 -98 9 1428 22 0 0 0 chr11 110562281 110562303 -11281553 + AT_rich Low_complexity Low_complexity 1 22 0 9 1428 317 327 163 20 chr11 110563334 110563487 -11280369 - HAL1-3A_ME LINE L1 -404 2454 2280 9 1428 485 312 45 28 chr11 110565506 110565684 -11278172 - B3A SINE B2 -16 182 2 9 1428 586 293 140 38 chr11 110566496 110566717 -11277139 - Lx8 LINE L1 0 7473 7240 9 1428 249 57 0 0 chr11 110566717 110566752 -11277104 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1428 586 293 140 38 chr11 110566752 110566952 -11276904 - Lx8 LINE L1 -234 7239 7009 9 1428 423 52 0 0 chr11 110567043 110567101 -11276755 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 9 1428 934 66 0 0 chr11 110567130 110567251 -11276605 + B1_Mus1 SINE Alu 28 148 0 9 1428 753 259 62 25 chr11 110567841 110568083 -11275773 - MLT1B LTR MaLR -123 267 17 9 1428 259 262 12 0 chr11 110568129 110568209 -11275647 + L1_Mur3 LINE L1 735 815 -6897 9 1428 850 279 34 0 chr11 110568365 110568573 -11275283 + B3 SINE B2 2 216 0 1 1428 279 273 63 21 chr11 110569403 110569545 -11274311 + L1MA5 LINE L1 6110 6257 -43 1 1428 230 213 143 32 chr11 110570440 110570503 -11273353 - PB1D10 SINE Alu -36 81 12 1 1428 619 264 174 0 chr11 110570652 110570830 -11273026 - MER58A DNA MER1_type -11 213 5 1 1428 699 314 149 31 chr11 110571531 110571853 -11272003 + MLT1A0 LTR MaLR 3 362 -3 1 1428 215 61 0 29 chr11 110572622 110572656 -11271200 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1 1428 25 83 0 0 chr11 110572716 110572776 -11271080 + AT_rich Low_complexity Low_complexity 1 60 0 1 1428 508 301 45 17 chr11 110573359 110573535 -11270321 - B3A SINE B2 -16 182 2 1 1428 495 0 0 0 chr11 110574379 110574434 -11269422 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1428 562 318 35 97 chr11 110574568 110575073 -11268783 + Lx9 LINE L1 6845 7429 -215 1 1428 369 328 8 8 chr11 110575507 110575636 -11268220 + MTEa LTR MaLR 7 135 -244 1 1428 519 0 42 0 chr11 110575654 110575725 -11268131 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 1 1428 477 0 0 0 chr11 110575742 110575795 -11268061 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1428 382 289 57 8 chr11 110577863 110577985 -11265871 - MTEa LTR MaLR -2 377 250 1 1428 729 338 30 0 chr11 110578067 110578301 -11265555 - MTEa LTR MaLR -138 241 1 1 1428 1146 139 21 0 chr11 110579081 110579268 -11264588 + B2_Mm2 SINE B2 2 192 -3 1 1428 8052 98 33 12 chr11 110580418 110581481 -11262375 - Lx3A LINE L1 -4 6977 5917 1 1428 306 0 0 0 chr11 110581481 110581515 -11262341 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1428 8052 98 33 12 chr11 110581515 110581649 -11262207 - Lx3A LINE L1 -1065 5916 5757 1 1428 260 309 51 6 chr11 110581650 110581826 -11262030 - L1MB1 LINE L1 -49 6119 5936 1 1428 288 0 0 0 chr11 110581833 110581865 -11261991 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1428 396 0 0 0 chr11 110581880 110581924 -11261932 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1428 311 316 105 0 chr11 110581953 110582067 -11261789 - RSINE1 SINE B4 -39 126 1 1 1428 501 326 22 15 chr11 110582234 110582505 -11261351 - L1MB1 LINE L1 -392 5776 5504 1 1428 363 23 0 0 chr11 110582592 110582636 -11261220 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1428 1137 50 0 7 chr11 110582639 110582781 -11261075 - B1_Mm SINE Alu -4 143 3 1 1428 375 220 0 0 chr11 110582897 110582988 -11260868 + (CA)n Simple_repeat Simple_repeat 1 91 0 1 1428 350 106 0 0 chr11 110582988 110583035 -11260821 + HAL1-3A_ME LINE L1 1976 2022 -836 1 1428 416 255 84 10 chr11 110583055 110583257 -11260599 + L1MB1 LINE L1 5936 6152 -37 1 1428 236 226 16 0 chr11 110583366 110583428 -11260428 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1428 204 179 0 0 chr11 110586349 110586388 -11257468 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 1 1428 1277 64 6 0 chr11 110586388 110586560 -11257296 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 1 1428 444 250 67 22 chr11 110586561 110586696 -11257160 - B1_Mur2 SINE Alu -8 141 1 1 1428 32 26 0 0 chr11 110586696 110586735 -11257121 + AT_rich Low_complexity Low_complexity 1 39 0 1 1428 28 0 0 0 chr11 110587874 110587902 -11255954 + AT_rich Low_complexity Low_complexity 1 28 0 1 1428 1129 153 11 14 chr11 110587906 110588100 -11255756 - B3 SINE B2 -5 211 17 1 1428 255 351 22 22 chr11 110588108 110588245 -11255611 - MIRb SINE MIR -76 192 56 1 1428 234 0 0 0 chr11 110588426 110588452 -11255404 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1428 229 337 87 70 chr11 110589314 110589614 -11254242 + MLT1F2 LTR MaLR 253 557 -3 1 1428 433 266 121 19 chr11 110589617 110589847 -11254009 + L1MC3 LINE L1 5646 5895 -464 1 1428 453 36 0 0 chr11 110589847 110589902 -11253954 + (CAAAC)n Simple_repeat Simple_repeat 2 56 0 1 1428 372 289 125 22 chr11 110589902 110589983 -11253873 + L1MC3 LINE L1 5896 5988 -371 1 1428 246 32 0 0 chr11 110589986 110590017 -11253839 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1428 3760 198 41 6 chr11 110590048 110590835 -11253021 - Lx5 LINE L1 -149 6901 6088 1 1428 729 284 61 5 chr11 110590836 110591034 -11252822 - B4A SINE B4 -82 210 2 1 1428 23 0 0 0 chr11 110591838 110591861 -11251995 + AT_rich Low_complexity Low_complexity 1 23 0 1 1428 26 64 0 0 chr11 110592300 110592347 -11251509 + AT_rich Low_complexity Low_complexity 1 47 0 1 1428 237 311 170 33 chr11 110595071 110595224 -11248632 - MIR SINE MIR -48 214 41 1 1428 631 257 65 35 chr11 110596430 110596720 -11247136 + L1M2 LINE L1 3432 3730 -2413 1 1428 521 358 0 20 chr11 110596743 110596940 -11246916 - B3A SINE B2 0 198 6 1 1428 7598 56 7 0 chr11 110596941 110598087 -11245769 - L1_Mus1 LINE L1 -6 6561 5409 1 1428 828 241 48 0 chr11 110598144 110598396 -11245460 + Lx6 LINE L1 6255 6735 -725 1 1428 496 72 172 35 chr11 110598434 110598550 -11245306 - L1_Mus4 LINE L1 -1 6635 6504 1 1428 4920 86 65 5 chr11 110598550 110599292 -11244564 - RLTR13C2 LTR ERVK 0 808 30 1 1428 9095 115 6 7 chr11 110599292 110600137 -11243719 - L1_Mus4 LINE L1 -673 5963 5137 1 1428 1085 155 27 0 chr11 110600137 110600324 -11243532 - B2_Mm2 SINE B2 -3 192 1 1 1428 9095 149 9 13 chr11 110600324 110601204 -11242652 - L1_Mus4 LINE L1 -747 5136 4244 1 1428 16092 140 7 18 chr11 110601205 110604483 -11239373 + L1VL4 LINE L1 989 4230 -1653 1 1428 1143 295 27 14 chr11 110604489 110604916 -11238940 + Lx6 LINE L1 6478 7283 -177 1 1428 37709 31 2 7 chr11 110604927 110611312 -11232544 - L1Md_T LINE L1 0 6582 229 1 1428 478 287 0 39 chr11 110611314 110611492 -11232364 + Lx6 LINE L1 7260 7430 -30 1 1428 390 275 50 0 chr11 110611494 110611654 -11232202 + L1M2 LINE L1 3712 3879 -2261 1 1428 546 252 158 25 chr11 110611723 110611926 -11231930 + B4A SINE B4 2 231 -61 1 1428 1421 297 43 29 chr11 110612037 110612758 -11231098 + L1M2 LINE L1 4261 4991 -1152 1 1428 250 258 137 58 chr11 110612766 110613050 -11230806 - MLT2B3 LTR ERVL -159 356 36 1 1428 533 345 66 83 chr11 110613230 110613593 -11230263 - MTEa LTR MaLR -17 362 6 1 1428 1153 350 108 26 chr11 110613595 110614241 -11229615 - MTEa-int LTR MaLR -2 1578 880 1 1428 707 321 123 37 chr11 110614253 110614742 -11229114 - MTEa-int LTR MaLR -952 628 98 1 1428 471 35 0 0 chr11 110614780 110614837 -11229019 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1428 549 318 7 33 chr11 110614901 110615054 -11228802 + RSINE1 SINE B4 2 150 -15 1 1428 210 71 0 0 chr11 110615667 110615695 -11228161 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1428 568 246 0 37 chr11 110615696 110615831 -11228025 - Tigger9a DNA Tigger -31 701 572 1 1428 395 322 114 5 chr11 110616295 110616479 -11227377 - B3 SINE B2 -11 205 2 1 1428 210 173 57 19 chr11 110616614 110616667 -11227189 + CT-rich Low_complexity Low_complexity 6 60 0 1 1428 704 341 9 0 chr11 110616667 110616887 -11226969 - ID_B1 SINE B4 0 224 3 1 1428 653 289 66 59 chr11 110617350 110617495 -11226361 - Lx8 LINE L1 -2 7471 7324 1 1428 4583 77 0 0 chr11 110617495 110618089 -11225767 - L1_Mus2 LINE L1 -1 6565 5972 1 1428 653 289 66 59 chr11 110618089 110618263 -11225593 - Lx8 LINE L1 -150 7323 7150 1 1428 582 303 5 61 chr11 110619000 110619214 -11224642 + B4A SINE B4 2 203 -89 1 1428 318 50 0 0 chr11 110619214 110619254 -11224602 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1428 464 235 7 0 chr11 110620474 110620610 -11223246 + (TA)n Simple_repeat Simple_repeat 1 137 0 1 1428 224 323 184 42 chr11 110620755 110621162 -11222694 - L2 LINE L2 -953 2466 2002 1 1428 399 68 0 0 chr11 110621258 110621317 -11222539 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1428 246 237 64 118 chr11 110621631 110621741 -11222115 - MER5A1 DNA MER1_type -15 151 48 1 1428 1862 249 70 4 chr11 110621923 110622452 -11221404 - RCHARR1 DNA MER1_type -169 805 242 1 1428 279 0 0 0 chr11 110622642 110622673 -11221183 + (A)n Simple_repeat Simple_repeat 1 31 0 1 178 6594 57 4 4 chr11 110623947 110624786 -11219070 + L1Md_F2 LINE L1 5743 6581 -1 1 1429 29721 72 5 3 chr11 110624786 110630075 -11213781 - L1Md_F LINE L1 -510 5373 98 1 1429 6725 120 11 15 chr11 110630079 110631909 -11211947 - Lx LINE L1 -21 6633 4816 1 1429 300 53 0 0 chr11 110632527 110632565 -11211291 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1429 1164 211 16 161 chr11 110632991 110633363 -11210493 - ORR1C2 LTR MaLR -1 383 66 1 1429 182 222 19 0 chr11 110633542 110633596 -11210260 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 1 1429 223 200 123 74 chr11 110633711 110633792 -11210064 - B2_Mm2 SINE B2 -33 162 78 1 1429 446 325 75 16 chr11 110633945 110634416 -11209440 - Charlie7 DNA MER1_type -1370 1242 719 1 1429 519 17 0 0 chr11 110634427 110634487 -11209369 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1429 679 293 173 8 chr11 110634654 110634902 -11208954 - B4 SINE B4 -2 290 2 1 1429 381 331 35 7 chr11 110635067 110635210 -11208646 - MIR SINE MIR -115 147 1 1 1429 238 278 14 0 chr11 110635284 110635356 -11208500 - Charlie7 DNA MER1_type -2195 417 345 1 1429 1461 154 49 19 chr11 110636355 110636619 -11207237 + RMER19A LTR ERVK 454 725 -12 1 1429 733 341 60 19 chr11 110637006 110637275 -11206581 + B4A SINE B4 9 288 -4 1 1429 222 208 0 0 chr11 110637283 110637336 -11206520 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1429 578 274 146 0 chr11 110637850 110638014 -11205842 + ID_B1 SINE B4 37 224 0 1 1429 512 317 86 33 chr11 110638561 110638897 -11204959 - L1MEg LINE L1 -4425 1659 1306 1 1429 436 301 55 61 chr11 110639005 110639168 -11204688 - RSINE1 SINE B4 0 165 4 1 1429 277 282 12 60 chr11 110639176 110639259 -11204597 - ID4_ SINE ID 0 83 5 1 1429 549 44 0 0 chr11 110639292 110639360 -11204496 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 1 1429 514 82 24 0 chr11 110639360 110639445 -11204411 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1429 236 382 142 22 chr11 110641078 110641346 -11202510 - Arthur1 DNA Tip100 -3561 386 87 1 1429 224 30 30 0 chr11 110641378 110641411 -11202445 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1429 224 306 131 25 chr11 110641632 110641765 -11202091 + MIRc SINE MIR 28 170 -98 1 1429 21 0 0 0 chr11 110641917 110641938 -11201918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1429 933 292 41 44 chr11 110644002 110644346 -11199510 + MER121 Unknown Unknown 14 356 -56 1 1429 970 284 113 20 chr11 110644648 110644993 -11198863 - MTD LTR MaLR -14 405 29 2 1429 240 211 0 34 chr11 110644974 110645033 -11198823 + U2 snRNA snRNA 1 57 -131 2 1429 390 321 31 10 chr11 110645473 110645668 -11198188 - L1M4 LINE L1 -2257 3889 3691 2 1429 816 271 146 68 chr11 110645675 110646115 -11197741 - Lx8 LINE L1 -73 7400 6927 2 1429 1140 169 15 0 chr11 110646216 110646417 -11197439 - ORR1B1 LTR MaLR -4 390 187 2 1429 971 115 32 6 chr11 110646426 110646584 -11197272 + ORR1B1 LTR MaLR 233 394 0 2 1429 613 147 149 38 chr11 110646594 110646742 -11197114 - ORR1B1 LTR MaLR -197 197 1 2 1429 348 304 54 38 chr11 110646745 110647114 -11196742 + L1MB7 LINE L1 4474 4848 -1298 2 1429 1462 234 60 55 chr11 110647129 110647495 -11196361 + ORR1D1 LTR MaLR 2 369 -5 2 1429 334 264 70 57 chr11 110647506 110647735 -11196121 + L1MB7 LINE L1 4861 5092 -1054 2 1429 1090 178 46 0 chr11 110647762 110647959 -11195897 - B3 SINE B2 -10 206 1 2 1429 223 322 16 56 chr11 110648123 110648248 -11195608 + PB1 SINE Alu 1 120 -7 2 1429 2398 253 10 2 chr11 110648353 110648875 -11194981 - Lx6 LINE L1 -8 7452 6927 2 1429 491 267 26 0 chr11 110648875 110648991 -11194865 + PB1D9 SINE Alu 1 119 -1 2 1429 663 307 226 53 chr11 110648994 110649294 -11194562 + Lx8 LINE L1 6961 7327 -146 2 1429 1284 182 5 0 chr11 110649294 110649514 -11194342 - URR1B DNA MER1_type 0 225 5 2 1429 663 252 48 95 chr11 110649514 110649682 -11194174 + Lx8 LINE L1 7328 7473 0 2 1429 1007 322 53 30 chr11 110649728 110650551 -11193305 + L1MB7 LINE L1 5318 6159 -25 2 1429 34526 34 43 6 chr11 110651240 110657371 -11186485 - L1Md_A LINE L1 0 6582 232 2 1429 509 197 20 13 chr11 110657373 110657522 -11186334 - Lx9 LINE L1 -6 7638 7489 2 1429 1047 236 32 61 chr11 110657536 110657816 -11186040 + MTE2a LTR MaLR 108 379 0 2 1429 929 314 41 44 chr11 110658000 110658340 -11185516 - Lx5 LINE L1 -204 6846 6508 2 1429 748 236 134 58 chr11 110660345 110660606 -11183250 + B4 SINE B4 12 292 0 2 1429 498 269 0 0 chr11 110660635 110660802 -11183054 + (CA)n Simple_repeat Simple_repeat 2 168 0 2 1429 675 112 0 0 chr11 110662216 110662323 -11181533 + (GA)n Simple_repeat Simple_repeat 1 107 0 2 1429 774 336 47 16 chr11 110662328 110662582 -11181274 - B4A SINE B4 -28 264 3 2 1429 1107 85 127 0 chr11 110664265 110664430 -11179426 - B2_Mm2 SINE B2 -8 187 2 2 1429 220 205 0 0 chr11 110664583 110664622 -11179234 + (CAA)n Simple_repeat Simple_repeat 2 40 0 2 1429 235 277 18 82 chr11 110664622 110664732 -11179124 - MIR SINE MIR 0 262 160 2 1429 1009 277 134 54 chr11 110664733 110665069 -11178787 - MTE2a LTR MaLR 0 379 17 2 1429 448 254 98 104 chr11 110665257 110665414 -11178442 + B3A SINE B2 2 153 -40 2 1429 474 18 0 0 chr11 110665414 110665469 -11178387 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1429 216 254 98 104 chr11 110665469 110665504 -11178352 + B2_Mm1t SINE B2 154 193 0 2 1429 323 281 0 35 chr11 110666267 110666352 -11177504 - B1F SINE Alu -62 87 6 2 1429 844 295 26 30 chr11 110667818 110668087 -11175769 - B4A SINE B4 -23 269 2 2 1429 431 316 28 17 chr11 110669167 110669344 -11174512 - MLT1F2 LTR MaLR 0 560 382 2 1429 362 381 26 16 chr11 110669408 110669600 -11174256 - MLT1F2 LTR MaLR -366 194 1 2 1429 195 162 0 0 chr11 110670494 110670531 -11173325 + GA-rich Low_complexity Low_complexity 3 39 0 2 1429 233 229 13 79 chr11 110670581 110670657 -11173199 + LTR84a LTR ERVL 268 338 -419 2 1429 363 44 0 0 chr11 110672187 110672232 -11171624 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1429 1615 189 9 117 chr11 110673054 110673491 -11170365 - RMER10B LTR ERVL -6 392 3 2 1429 480 151 343 35 chr11 110673609 110673708 -11170148 + URR1B DNA MER1_type 1 106 -119 2 1429 732 54 0 0 chr11 110673708 110673801 -11170055 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 1429 480 151 343 35 chr11 110673801 110673873 -11169983 + URR1B DNA MER1_type 107 225 0 2 1429 619 366 36 82 chr11 110674003 110674021 -11169835 - B4 SINE B4 0 292 275 2 1429 261 0 0 0 chr11 110674021 110674050 -11169806 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2 1429 619 366 36 82 chr11 110674050 110674258 -11169598 - B4 SINE B4 -18 274 79 2 1429 294 50 0 0 chr11 110674258 110674298 -11169558 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1429 619 366 36 82 chr11 110674298 110674376 -11169480 - B4 SINE B4 -214 78 2 2 1429 504 291 73 60 chr11 110674747 110674981 -11168875 - MLT1A1 LTR MaLR -12 396 160 2 1429 651 46 0 0 chr11 110675515 110675602 -11168254 + (GA)n Simple_repeat Simple_repeat 1 87 0 2 1429 378 0 0 0 chr11 110675846 110675888 -11167968 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 1429 38 0 0 0 chr11 110677037 110677075 -11166781 + AT_rich Low_complexity Low_complexity 1 38 0 2 1429 707 274 67 19 chr11 110677292 110677500 -11166356 + B4A SINE B4 2 219 -73 2 1429 457 298 81 81 chr11 110677749 110677789 -11166067 - MLT1A0 LTR MaLR -164 201 162 2 1429 1347 148 4 22 chr11 110677789 110678017 -11165839 + URR1A DNA MER1_type 3 226 0 2 1429 457 298 81 81 chr11 110678017 110678173 -11165683 - MLT1A0 LTR MaLR -204 161 5 2 1429 300 354 32 45 chr11 110678199 110678353 -11165503 + MER58A DNA MER1_type 16 167 -57 2 1429 218 339 136 8 chr11 110678441 110678566 -11165290 - MIR SINE MIR -108 154 14 2 1429 1403 251 79 3 chr11 110679426 110679769 -11164087 - MTEa LTR MaLR 0 379 11 2 1429 1266 265 72 38 chr11 110679857 110680386 -11163470 - Lx8 LINE L1 -5 7468 6922 2 1429 579 216 144 0 chr11 110680961 110681100 -11162756 - B3 SINE B2 0 216 58 2 1429 314 368 16 23 chr11 110681217 110681345 -11162511 + MER5A DNA MER1_type 3 129 -60 2 1429 493 338 117 0 chr11 110681466 110681697 -11162159 + MER2 DNA MER2_type 23 280 -65 2 1429 1365 89 21 5 chr11 110681699 110681890 -11161966 + B2_Mm2 SINE B2 2 195 0 2 1429 412 318 22 54 chr11 110682356 110682579 -11161277 - B3 SINE B2 0 216 1 2 1429 1052 260 32 26 chr11 110683000 110683287 -11160569 + B4A SINE B4 2 292 0 2 1429 451 31 31 0 chr11 110683335 110683400 -11160456 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1429 985 102 38 11 chr11 110686142 110686668 -11157188 + (TATG)n Simple_repeat Simple_repeat 1 540 0 2 1429 393 263 20 10 chr11 110686973 110687073 -11156783 - B1F SINE Alu -25 124 24 2 1429 897 158 8 4 chr11 110687297 110687573 -11156283 + CT-rich Low_complexity Low_complexity 1 277 0 2 1429 343 337 49 35 chr11 110688279 110688482 -11155374 + MIR SINE MIR 30 235 -27 2 1429 477 0 0 0 chr11 110689102 110689155 -11154701 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1429 344 206 47 0 chr11 110689158 110689265 -11154591 + Lx9 LINE L1 7525 7636 -8 2 1429 583 314 55 46 chr11 110689281 110689498 -11154358 - B4A SINE B4 -69 223 5 2 1429 1205 277 33 41 chr11 110690960 110691325 -11152531 - MTE2b LTR MaLR -17 362 1 2 1429 216 0 0 0 chr11 110692003 110692027 -11151829 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1429 544 311 19 87 chr11 110692032 110692342 -11151514 - B4A SINE B4 0 292 4 2 1429 612 0 0 0 chr11 110692347 110692415 -11151441 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 2 1429 1038 93 11 11 chr11 110693736 110694023 -11149833 + (TG)n Simple_repeat Simple_repeat 1 287 0 2 1429 323 289 47 24 chr11 110694026 110694176 -11149680 - B4A SINE B4 -18 274 111 2 1429 23 0 0 0 chr11 110695280 110695303 -11148553 + AT_rich Low_complexity Low_complexity 1 23 0 2 1429 186 206 29 14 chr11 110695692 110695761 -11148095 + CT-rich Low_complexity Low_complexity 1 70 0 2 1429 557 314 80 69 chr11 110695796 110696084 -11147772 + B4A SINE B4 2 292 0 2 1429 229 259 43 43 chr11 110696273 110696390 -11147466 - L1MEc LINE L1 -4418 1982 1866 2 1429 1574 242 39 24 chr11 110696641 110697051 -11146805 + Lx6 LINE L1 7018 7433 -27 2 1429 575 253 39 45 chr11 110697328 110697506 -11146350 - B3A SINE B2 -18 180 4 2 1429 247 146 0 35 chr11 110697552 110697609 -11146247 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1429 947 161 0 6 chr11 110697659 110697840 -11146016 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1429 1146 277 62 25 chr11 110698013 110698413 -11145443 + MTD LTR MaLR 5 419 0 2 1429 666 289 40 18 chr11 110699832 110700054 -11143802 + MLT2B4 LTR ERVL 12 238 -318 2 1429 360 0 0 0 chr11 110701445 110701485 -11142371 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 1429 659 218 66 12 chr11 110701915 110702082 -11141774 - MER58A DNA MER1_type 0 224 49 2 1429 849 268 66 40 chr11 110702694 110702966 -11140890 + B4A SINE B4 14 292 0 2 1429 677 309 61 24 chr11 110704569 110704944 -11138912 - L1MA10 LINE L1 -2 6332 5944 2 1429 889 206 38 72 chr11 110705058 110705443 -11138413 + RMER13B LTR ERVK 1 229 -679 2 1429 1738 186 44 19 chr11 110706128 110706489 -11137367 + ORR1B1 LTR MaLR 1 370 -24 2 1429 850 188 0 20 chr11 110706547 110706694 -11137162 + B1_Mur3 SINE Alu 1 144 -5 2 1429 423 0 0 0 chr11 110708593 110708640 -11135216 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1429 2313 169 114 86 chr11 110708698 110709292 -11134564 + RMER19C LTR ERVK 1 611 0 2 1429 1123 233 21 25 chr11 110709628 110709870 -11133986 - MTEb LTR MaLR -137 242 2 2 1429 1856 293 92 66 chr11 110709874 110710733 -11133123 - MTEb-int LTR MaLR -3 1577 697 2 1429 451 334 14 41 chr11 110711060 110711282 -11132574 - MLT1C LTR MaLR -128 262 53 2 1429 986 278 0 0 chr11 110711515 110711727 -11132129 + B3 SINE B2 3 214 -2 2 1429 519 17 0 0 chr11 110711951 110712011 -11131845 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1429 1242 71 0 24 chr11 110712183 110712435 -11131421 + (TTC)n Simple_repeat Simple_repeat 1 246 0 2 1429 390 74 0 0 chr11 110712437 110712491 -11131365 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1429 570 296 55 36 chr11 110712608 110712773 -11131083 - B4A SINE B4 -57 235 68 2 1429 361 323 98 15 chr11 110712808 110713012 -11130844 + L1MCa LINE L1 1595 1815 -4693 2 1429 311 281 21 0 chr11 110713095 110713191 -11130665 + L1MCa LINE L1 1998 2095 -4307 2 1429 255 266 0 112 chr11 110713225 110713386 -11130470 + L1MCa LINE L1 4090 4232 -2089 2 1429 371 136 196 37 chr11 110713586 110713693 -11130163 - ORR1B2 LTR MaLR -243 124 1 2 1429 1379 239 57 60 chr11 110713750 110714120 -11129736 + MTE2a LTR MaLR 9 377 -2 2 1429 227 196 22 0 chr11 110714506 110714552 -11129304 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1429 719 270 138 13 chr11 110714591 110714816 -11129040 - B4A SINE B4 -35 257 5 3 1429 291 239 49 69 chr11 110714936 110715080 -11128776 + L1MCa LINE L1 5137 5277 -1044 2 1429 644 226 13 27 chr11 110715146 110715296 -11128560 + B1_Mur1 SINE Alu 2 149 0 3 1429 462 341 60 8 chr11 110715306 110715439 -11128417 + RSINE1 SINE B4 4 143 -22 3 1429 411 293 16 72 chr11 110715677 110715802 -11128054 + ID_B1 SINE B4 98 215 -9 3 1429 546 333 49 33 chr11 110716369 110716614 -11127242 + B4A SINE B4 24 272 -20 3 1429 180 0 0 0 chr11 110717002 110717022 -11126834 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1429 468 81 0 0 chr11 110719218 110719292 -11124564 + (T)n Simple_repeat Simple_repeat 1 74 0 3 1429 571 291 48 10 chr11 110719292 110719500 -11124356 - B3 SINE B2 0 216 1 3 1429 488 354 89 34 chr11 110719984 110720221 -11123635 + B4A SINE B4 27 276 -16 3 1429 333 0 0 0 chr11 110720223 110720260 -11123596 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1429 786 50 0 0 chr11 110721000 110721099 -11122757 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 1429 540 0 0 0 chr11 110721501 110721561 -11122295 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1429 28 48 0 0 chr11 110721696 110721738 -11122118 + AT_rich Low_complexity Low_complexity 1 42 0 3 1429 222 91 0 0 chr11 110722114 110722147 -11121709 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 3 1429 1131 83 0 27 chr11 110722148 110722333 -11121523 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1429 215 224 20 0 chr11 110722335 110722384 -11121472 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 3 1429 387 0 0 0 chr11 110722389 110722432 -11121424 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 3 1429 689 278 37 33 chr11 110724038 110724280 -11119576 + MLT1B LTR MaLR 24 266 -124 3 1429 662 0 13 0 chr11 110724330 110724408 -11119448 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 1429 708 224 0 0 chr11 110724409 110724574 -11119282 + (TA)n Simple_repeat Simple_repeat 1 165 0 3 1429 504 293 40 91 chr11 110724657 110724828 -11119028 + B3 SINE B2 1 172 -44 3 1429 279 122 0 0 chr11 110724828 110724877 -11118979 + (CATA)n Simple_repeat Simple_repeat 2 50 0 3 1429 316 293 40 91 chr11 110724877 110724904 -11118952 + B2_Mm2 SINE B2 163 189 -6 3 1429 199 79 26 26 chr11 110726196 110726235 -11117621 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 1429 747 125 17 6 chr11 110726294 110726471 -11117385 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 3 1429 262 357 53 39 chr11 110726619 110726826 -11117030 + MIR SINE MIR 7 216 -46 3 1429 429 318 46 31 chr11 110727093 110727223 -11116633 - RSINE1 SINE B4 -10 155 24 3 1429 308 289 0 82 chr11 110728349 110728447 -11115409 - PB1D10 SINE Alu -1 116 27 3 1429 1375 227 72 6 chr11 110728541 110728873 -11114983 - RLTR30 LTR ERV1 -25 354 1 3 1429 310 162 37 28 chr11 110729296 110729404 -11114452 + CT-rich Low_complexity Low_complexity 1 109 0 3 1429 545 304 93 0 chr11 110729407 110729568 -11114288 - B4 SINE B4 -36 256 81 3 1429 606 70 49 37 chr11 110729569 110729731 -11114125 + T-rich Low_complexity Low_complexity 4 167 0 3 1429 254 276 12 84 chr11 110729736 110729819 -11114037 - B4 SINE B4 -215 77 1 3 1429 289 267 26 8 chr11 110729853 110729970 -11113886 + L1MB7 LINE L1 6031 6149 -35 3 1429 477 0 0 0 chr11 110730525 110730578 -11113278 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1429 280 317 72 29 chr11 110730585 110730793 -11113063 - L1M2 LINE L1 -510 5781 5565 3 1429 1709 84 39 68 chr11 110730874 110731155 -11112701 - L1Md_F2 LINE L1 -2 6580 6308 3 1429 559 242 78 0 chr11 110731231 110731359 -11112497 - ID_B1 SINE B4 0 224 87 3 1429 35 54 0 0 chr11 110731443 110731499 -11112357 + AT_rich Low_complexity Low_complexity 1 56 0 3 1429 279 0 0 0 chr11 110731922 110731953 -11111903 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1429 346 341 28 29 chr11 110731971 110732251 -11111605 - Lx9 LINE L1 -183 7461 7147 3 1429 929 309 11 0 chr11 110732250 110732515 -11111341 + Lx9 LINE L1 6357 6624 -1020 3 1429 468 0 0 0 chr11 110732585 110732637 -11111219 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1429 339 44 0 0 chr11 110732975 110733020 -11110836 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1429 639 58 0 0 chr11 110733363 110733450 -11110406 + L1_Mus2 LINE L1 6480 6566 0 3 1429 293 266 83 35 chr11 110734713 110734870 -11108986 - Lx9 LINE L1 -1 7643 7479 3 1429 531 45 0 0 chr11 110734870 110734936 -11108920 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1429 293 266 83 35 chr11 110734936 110735008 -11108848 - Lx9 LINE L1 -166 7478 7403 3 1429 371 348 50 107 chr11 110735127 110735407 -11108449 - LTR16A LTR ERVL -125 326 63 3 1429 435 38 0 0 chr11 110736760 110736813 -11107043 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1429 743 170 7 0 chr11 110737449 110737602 -11106254 + (TA)n Simple_repeat Simple_repeat 2 155 0 3 1429 414 294 228 24 chr11 110737603 110737770 -11106086 - B3 SINE B2 -15 201 1 3 1429 504 216 86 8 chr11 110737955 110737997 -11105859 + B1_Mur1 SINE Alu 22 63 -86 3 1429 183 42 0 0 chr11 110737997 110738021 -11105835 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1429 504 216 86 8 chr11 110738021 110738095 -11105761 + B1_Mur1 SINE Alu 64 146 -3 3 1429 870 282 25 59 chr11 110738833 110739153 -11104703 - MLT1D LTR MaLR 0 505 197 3 1429 287 0 0 50 chr11 110739176 110739216 -11104640 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 3 1429 1806 185 70 9 chr11 110739218 110739721 -11104135 - Lx4B LINE L1 -32 6968 6421 3 1429 299 338 146 24 chr11 110739836 110740000 -11103856 - MLT1J2 LTR MaLR -141 307 124 3 1429 716 239 68 24 chr11 110741846 110742052 -11101804 + B3 SINE B2 2 216 0 3 1429 1037 110 6 0 chr11 110743118 110743281 -11100575 + (GGAA)n Simple_repeat Simple_repeat 3 166 0 3 1429 274 352 47 9 chr11 110743378 110743484 -11100372 + B1F SINE Alu 26 135 -14 3 1429 453 320 29 10 chr11 110743840 110744048 -11099808 + Lx8 LINE L1 6968 7179 -294 3 1429 491 238 183 41 chr11 110744147 110744366 -11099490 + RLTR10A LTR ERVK 147 396 -15 3 1429 343 259 12 0 chr11 110744437 110744518 -11099338 + Lx8 LINE L1 7257 7338 -135 3 1429 1165 63 0 0 chr11 110744564 110744706 -11099150 - B1_Mus1 SINE Alu -5 143 2 3 1429 674 55 11 0 chr11 110744789 110744880 -11098976 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 3 1429 2994 204 68 0 chr11 110744887 110745583 -11098273 - Lx3C LINE L1 -2 6974 6191 3 1429 958 111 0 16 chr11 110745600 110745759 -11098097 + Lx2B LINE L1 5660 5804 -1669 3 1429 598 281 37 0 chr11 110745763 110745927 -11097929 + RLTR1 LTR ERV1 81 250 -374 3 1429 999 281 84 70 chr11 110745921 110746335 -11097521 + RLTR1D LTR ERV1 186 605 0 3 1429 1275 177 159 15 chr11 110746335 110746668 -11097188 + Lx3C LINE L1 5790 6170 -806 3 1429 534 31 0 0 chr11 110746668 110746732 -11097124 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3 1429 294 133 0 0 chr11 110747676 110747721 -11096135 + URR1B DNA MER1_type 181 225 0 3 1429 437 199 28 28 chr11 110748636 110748781 -11095075 - Lx9 LINE L1 0 7644 7500 3 1429 579 306 29 29 chr11 110748966 110749141 -11094715 - B3A SINE B2 -22 176 2 3 1429 247 362 0 0 chr11 110750271 110750340 -11093516 + B4A SINE B4 99 167 -125 3 1429 263 246 0 16 chr11 110750519 110750581 -11093275 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1429 329 44 22 0 chr11 110750597 110750642 -11093214 + HAL1-3A_ME LINE L1 1973 2018 -840 3 1429 532 300 16 71 chr11 110751742 110751925 -11091931 - MER20 DNA MER1_type -43 176 4 3 1429 306 0 0 0 chr11 110752356 110752390 -11091466 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1429 221 159 0 0 chr11 110752418 110752462 -11091394 + T-rich Low_complexity Low_complexity 1 44 0 3 1429 227 165 125 12 chr11 110753617 110753697 -11090159 + L1MD LINE L1 4677 4765 -1381 3 1429 480 348 28 21 chr11 110753855 110754140 -11089716 + Lx7 LINE L1 6792 7078 -618 3 1429 364 333 10 20 chr11 110754456 110754557 -11089299 - B3 SINE B2 -90 126 27 3 1429 335 262 8 149 chr11 110754540 110754590 -11089266 + B3 SINE B2 113 156 -60 3 1429 471 87 0 0 chr11 110754590 110754659 -11089197 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1429 335 262 8 149 chr11 110754659 110754729 -11089127 + B3 SINE B2 157 216 0 3 1429 249 33 0 0 chr11 110755565 110755595 -11088261 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1430 667 283 43 5 chr11 110755969 110756154 -11087702 - B3 SINE B2 -9 207 16 3 1430 813 143 0 0 chr11 110756198 110756324 -11087532 - Lx2B LINE L1 -547 6453 6328 3 1430 3503 124 25 21 chr11 110756325 110756884 -11086972 + Lx2B LINE L1 6437 6997 -3 3 1430 23 54 0 0 chr11 110756884 110756921 -11086935 + AT_rich Low_complexity Low_complexity 1 37 0 3 1430 363 206 10 52 chr11 110756956 110757053 -11086803 - MTD LTR MaLR 0 419 327 3 1430 310 251 22 0 chr11 110757028 110757110 -11086746 + MTD LTR MaLR 256 343 -78 3 1430 2707 182 54 11 chr11 110757646 110758197 -11085659 + RMER15 LTR ERVL 1 575 0 3 1430 300 247 65 78 chr11 110758328 110758519 -11085337 + ORR1E LTR MaLR 1 203 -156 3 1430 474 292 162 0 chr11 110758767 110758921 -11084935 - B3A SINE B2 -18 180 2 3 1430 188 181 182 95 chr11 110759015 110759112 -11084744 + MIRb SINE MIR 45 151 -57 3 1430 446 316 13 7 chr11 110759525 110759678 -11084178 + RSINE1 SINE B4 4 157 -8 3 1430 272 326 147 0 chr11 110759871 110759966 -11083890 - PB1D10 SINE Alu -8 109 1 3 1430 526 271 23 8 chr11 110759966 110760027 -11083829 - ID SINE ID -142 82 20 3 1430 432 55 0 0 chr11 110760591 110760646 -11083210 + (TTG)n Simple_repeat Simple_repeat 2 56 0 3 1430 22 0 0 0 chr11 110761791 110761813 -11082043 + AT_rich Low_complexity Low_complexity 1 22 0 3 1430 1521 302 34 78 chr11 110761937 110762723 -11081133 - Lx9 LINE L1 -535 7109 6358 3 1430 501 17 0 0 chr11 110762748 110762806 -11081050 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1430 226 246 0 0 chr11 110763117 110763174 -11080682 - Lx9 LINE L1 -458 7186 7130 3 1430 1011 75 0 0 chr11 110763263 110763409 -11080447 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 4 1430 773 0 25 33 chr11 110763436 110763557 -11080299 + (TTCTC)n Simple_repeat Simple_repeat 5 124 0 4 1430 653 351 64 8 chr11 110763713 110763977 -11079879 + B4A SINE B4 10 288 -4 4 1430 32 43 0 0 chr11 110764048 110764094 -11079762 + AT_rich Low_complexity Low_complexity 1 46 0 4 1430 631 331 74 34 chr11 110764407 110764732 -11079124 - MER115 DNA Tip100 0 693 356 4 1430 225 128 0 0 chr11 110764733 110764780 -11079076 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1430 2027 137 3 44 chr11 110764878 110765221 -11078635 - ORR1A4 LTR MaLR 0 329 1 4 1430 187 302 0 16 chr11 110765320 110765384 -11078472 + L2 LINE L2 2074 2136 -1283 4 1430 289 405 51 51 chr11 110765561 110765699 -11078157 - MER115 DNA Tip100 -326 367 230 4 1430 797 255 1 27 chr11 110766042 110766250 -11077606 + B3A SINE B2 2 204 -12 4 1430 27 0 0 0 chr11 110766251 110766278 -11077578 + AT_rich Low_complexity Low_complexity 1 27 0 4 1430 1587 186 82 31 chr11 110766314 110766669 -11077187 - ORR1C1 LTR MaLR 0 378 6 4 1430 508 95 24 0 chr11 110767319 110767403 -11076453 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 1430 409 284 44 124 chr11 110767712 110767937 -11075919 - MER20 DNA MER1_type -9 210 4 4 1430 22 0 0 0 chr11 110768199 110768221 -11075635 + AT_rich Low_complexity Low_complexity 1 22 0 4 1430 255 294 49 49 chr11 110768362 110768627 -11075229 - L1MC3 LINE L1 -18 7767 7503 4 1430 475 253 86 97 chr11 110768647 110768679 -11075177 - B3A SINE B2 -2 196 163 4 1430 2402 129 10 40 chr11 110768679 110769082 -11074774 - ORR1B1 LTR MaLR 0 394 4 4 1430 360 0 0 0 chr11 110769089 110769129 -11074727 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1430 500 246 97 30 chr11 110769129 110769263 -11074593 - B3 SINE B2 -50 166 24 4 1430 312 279 13 0 chr11 110769299 110769378 -11074478 - ID4 SINE ID -1 82 3 4 1430 260 277 15 15 chr11 110769589 110769655 -11074201 - ID4_ SINE ID -10 73 8 4 1430 1739 136 44 3 chr11 110769759 110770012 -11073844 - L1_Mus3 LINE L1 0 6638 6384 4 1430 255 31 0 0 chr11 110770012 110770044 -11073812 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 4 1430 1739 136 44 3 chr11 110770044 110770086 -11073770 - L1_Mus3 LINE L1 -255 6383 6332 4 1430 248 381 21 27 chr11 110770340 110770526 -11073330 - MIRb SINE MIR -42 226 42 4 1430 233 222 0 0 chr11 110771235 110771280 -11072576 + A-rich Low_complexity Low_complexity 1 45 0 4 1430 715 260 218 53 chr11 110772346 110772630 -11071226 - ORR1E LTR MaLR -3 371 41 4 1430 201 74 0 0 chr11 110773048 110773075 -11070781 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 4 1430 4069 132 31 19 chr11 110773075 110773742 -11070114 - Lx4A LINE L1 -14 7044 6370 4 1430 305 312 55 0 chr11 110775996 110776105 -11067751 + LTR16C LTR ERVL 367 481 -8 4 1430 548 279 8 0 chr11 110776587 110776716 -11067140 - B1F SINE Alu -17 132 3 4 1430 849 302 35 25 chr11 110777286 110777568 -11066288 + B4 SINE B4 6 290 -2 4 1430 315 0 0 0 chr11 110777581 110777616 -11066240 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1430 495 48 0 0 chr11 110777636 110777698 -11066158 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1430 210 118 0 0 chr11 110777702 110777736 -11066120 + (AGGGGG)n Simple_repeat Simple_repeat 6 39 0 4 1430 279 0 0 0 chr11 110778321 110778352 -11065504 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1430 378 0 0 0 chr11 110778352 110778393 -11065463 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1430 25 51 0 0 chr11 110779981 110780020 -11063836 + AT_rich Low_complexity Low_complexity 1 39 0 4 1430 774 195 120 36 chr11 110781135 110781327 -11062529 - B3 SINE B2 -2 214 7 4 1430 378 0 0 0 chr11 110781459 110781501 -11062355 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1430 787 297 51 26 chr11 110781504 110781777 -11062079 - B4 SINE B4 -10 282 3 4 1430 451 268 76 18 chr11 110781882 110782053 -11061803 + B3A SINE B2 3 183 -15 4 1430 31 26 0 0 chr11 110782364 110782402 -11061454 + AT_rich Low_complexity Low_complexity 1 38 0 4 1430 3015 133 0 9 chr11 110782402 110782863 -11060993 - Lx3C LINE L1 -2 6974 6518 4 1430 326 297 32 32 chr11 110783548 110783642 -11060214 - PB1D10 SINE Alu -10 107 14 4 1430 1110 88 0 0 chr11 110784745 110784892 -11058964 + B1_Mus1 SINE Alu 2 148 0 4 1430 220 197 14 27 chr11 110784895 110784968 -11058888 + A-rich Low_complexity Low_complexity 3 74 0 4 1430 540 237 114 17 chr11 110785256 110785432 -11058424 - Lx6 LINE L1 -1 7459 7267 4 1430 3080 121 77 8 chr11 110785430 110785947 -11057909 + L1_Mur2 LINE L1 5325 5877 0 4 1430 7238 136 16 2 chr11 110786253 110787384 -11056472 + Lx4A LINE L1 5912 7058 0 4 1430 396 284 20 0 chr11 110787385 110787487 -11056369 - Lx6 LINE L1 -192 7268 7165 4 1430 486 0 0 0 chr11 110787489 110787543 -11056313 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1430 435 297 122 21 chr11 110787548 110787644 -11056212 - Lx2B LINE L1 -13 6987 6885 4 1430 252 0 0 0 chr11 110787644 110787672 -11056184 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 4 1430 435 297 122 21 chr11 110787672 110787764 -11056092 - Lx2B LINE L1 -116 6884 6780 4 1430 31408 79 10 33 chr11 110788045 110793078 -11050778 - L1Md_F2 LINE L1 -13 6569 1546 4 1430 1101 77 0 0 chr11 110793078 110793221 -11050635 + B1_Mus1 SINE Alu 6 148 0 4 1430 31408 79 10 33 chr11 110793221 110794384 -11049472 - L1Md_F2 LINE L1 -13 1545 383 4 1430 2290 69 0 0 chr11 110794516 110794805 -11049051 - L1_Mus1 LINE L1 0 6567 6279 4 1430 303 314 56 32 chr11 110795665 110795915 -11047941 + L1M4 LINE L1 5500 5755 -429 4 1430 700 298 33 6 chr11 110796621 110796803 -11047053 + B4A SINE B4 106 292 0 4 1430 1086 86 0 0 chr11 110796825 110796976 -11046880 + (GA)n Simple_repeat Simple_repeat 2 152 0 4 1430 223 65 62 42 chr11 110796981 110797029 -11046827 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 4 1430 235 245 118 0 chr11 110797375 110797477 -11046379 - L1MA8 LINE L1 -2 6289 6176 4 1430 417 293 169 16 chr11 110797478 110797662 -11046194 + B3 SINE B2 1 212 -4 4 1430 388 328 118 34 chr11 110797897 110798159 -11045697 + B4A SINE B4 3 286 -6 4 1430 237 280 0 0 chr11 110799365 110799415 -11044441 + polypyrimidine Low_complexity Low_complexity 2 51 0 4 1430 288 275 0 0 chr11 110801526 110801595 -11042261 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 4 1430 735 191 0 0 chr11 110801614 110801776 -11042080 + (TCCA)n Simple_repeat Simple_repeat 4 165 0 4 1430 2448 53 47 0 chr11 110801923 110802267 -11041589 + L1_Mus1 LINE L1 6226 6567 0 4 1430 256 272 159 6 chr11 110802317 110802480 -11041376 + Charlie5 DNA MER1_type 2426 2613 -11 4 1430 235 319 29 14 chr11 110802526 110802596 -11041260 - ID4 SINE ID -10 73 3 4 1430 187 356 13 27 chr11 110802913 110802988 -11040868 + L2c LINE L2 3019 3092 -295 4 1430 400 228 12 0 chr11 110803121 110803292 -11040564 + CT-rich Low_complexity Low_complexity 2 174 0 4 1430 210 143 0 0 chr11 110803470 110803505 -11040351 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1430 212 59 0 29 chr11 110805472 110805507 -11038349 + (TAGTG)n Simple_repeat Simple_repeat 5 38 0 4 1430 1429 241 78 31 chr11 110805721 110806107 -11037749 - MTD LTR MaLR -15 404 1 4 1430 579 281 96 68 chr11 110806123 110806575 -11037281 + RLTR12B LTR ERVK 1 497 -31 4 1430 380 295 20 48 chr11 110806854 110807000 -11036856 + B1F1 SINE Alu 3 144 -5 4 1430 371 56 19 0 chr11 110807002 110807056 -11036800 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1430 513 0 0 0 chr11 110807056 110807112 -11036744 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1430 833 65 0 16 chr11 110808240 110808366 -11035490 + (TCTCTG)n Simple_repeat Simple_repeat 2 125 0 4 1430 308 294 0 0 chr11 110808366 110808485 -11035371 + CT-rich Low_complexity Low_complexity 1 119 0 4 1430 847 342 11 18 chr11 110808504 110808790 -11035066 - B4A SINE B4 -6 286 3 4 1430 1246 290 111 35 chr11 110808843 110809615 -11034241 - L1MCa LINE L1 -5166 1342 512 4 1430 264 315 149 52 chr11 110809749 110809903 -11033953 - Tigger5 DNA MER2_type -3 2403 2235 4 1430 324 0 0 0 chr11 110809905 110809941 -11033915 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1430 1173 43 0 7 chr11 110809942 110810084 -11033772 - B1_Mus2 SINE Alu -6 141 1 4 1430 246 234 0 0 chr11 110810508 110810555 -11033301 - L1MCa LINE L1 -6361 147 101 4 1430 654 104 0 0 chr11 110810596 110810692 -11033164 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 1430 750 311 20 38 chr11 110810961 110811078 -11032778 - Lx8 LINE L1 -322 7151 7035 4 1430 252 0 0 0 chr11 110811078 110811106 -11032750 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 4 1430 750 300 35 67 chr11 110811106 110811427 -11032429 - Lx8 LINE L1 -439 7034 6713 4 1430 423 0 0 0 chr11 110811661 110811708 -11032148 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1430 234 0 0 0 chr11 110811708 110811733 -11032123 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1430 369 0 0 0 chr11 110811733 110811773 -11032083 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1430 260 81 27 0 chr11 110813190 110813227 -11030629 - U2 snRNA snRNA -150 38 1 4 1430 236 329 136 39 chr11 110815312 110815467 -11028389 + MIRb SINE MIR 83 252 -16 4 1430 1444 235 28 45 chr11 110815889 110816246 -11027610 - ORR1E LTR MaLR -2 357 7 4 1430 774 185 202 0 chr11 110816676 110816854 -11027002 - B3 SINE B2 -1 215 2 4 1430 437 290 28 70 chr11 110817298 110817513 -11026343 + Tigger5 DNA MER2_type 2200 2405 -1 4 1430 365 313 148 39 chr11 110819236 110819492 -11024364 + Tigger9b DNA MER2_type 267 550 -74 4 1430 438 79 0 0 chr11 110819541 110819604 -11024252 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1430 410 395 70 35 chr11 110819610 110819867 -11023989 - B4A SINE B4 -26 266 1 4 1430 231 125 0 0 chr11 110821300 110821340 -11022516 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1430 487 319 63 88 chr11 110821860 110821930 -11021926 + B4A SINE B4 3 72 -220 4 1430 306 0 0 0 chr11 110821930 110821964 -11021892 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1430 487 319 63 88 chr11 110821964 110822178 -11021678 + B4A SINE B4 73 279 -13 4 1430 336 24 0 0 chr11 110822242 110822283 -11021573 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1430 312 291 64 41 chr11 110823792 110823964 -11019892 + Lx8 LINE L1 6904 7079 -394 5 1430 459 302 32 45 chr11 110824130 110824286 -11019570 + B3A SINE B2 4 157 -41 5 1430 352 340 70 44 chr11 110824496 110824767 -11019089 + ORR1D2 LTR MaLR 6 283 -87 5 1430 423 286 159 21 chr11 110825698 110825887 -11017969 - MER58B DNA MER1_type 0 341 127 5 1430 315 0 0 0 chr11 110825887 110825922 -11017934 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1430 486 83 0 0 chr11 110825942 110826014 -11017842 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1430 375 319 52 0 chr11 110826082 110826217 -11017639 - B4A SINE B4 -94 198 57 5 1430 850 216 10 16 chr11 110826852 110827045 -11016811 - RMER10A LTR ERVL -250 192 1 5 1430 211 262 24 0 chr11 110827052 110827094 -11016762 + B4A SINE B4 35 77 -215 5 1430 434 268 11 105 chr11 110827196 110827342 -11016514 + B4 SINE B4 149 290 -2 5 1430 2811 79 8 3 chr11 110827420 110827801 -11016055 + L1_Mus3 LINE L1 6244 6626 -12 5 1430 866 199 121 24 chr11 110829952 110830158 -11013698 + URR1A DNA MER1_type 1 226 0 5 1430 304 206 16 0 chr11 110830447 110830573 -11013283 + GA-rich Low_complexity Low_complexity 1 128 0 5 1430 217 268 0 0 chr11 110830594 110830665 -11013191 + GA-rich Low_complexity Low_complexity 2 72 0 5 1430 344 306 39 77 chr11 110830740 110830758 -11013098 + B4 SINE B4 74 218 -69 5 1430 690 221 0 15 chr11 110830758 110830891 -11012965 + B1_Mur1 SINE Alu 11 141 -8 5 1430 31 26 0 0 chr11 110831033 110831071 -11012785 + AT_rich Low_complexity Low_complexity 1 38 0 5 1430 297 274 55 0 chr11 110831071 110831144 -11012712 - B3 SINE B2 -37 179 103 5 1430 228 330 90 18 chr11 110831116 110831227 -11012629 - B2_Mm2 SINE B2 -75 120 2 5 1430 658 200 6 51 chr11 110831433 110831455 -11012401 + ID_B1 SINE B4 74 223 0 5 1430 1093 37 7 0 chr11 110831455 110831590 -11012266 + B1_Mus1 SINE Alu 13 148 0 5 1430 315 0 0 0 chr11 110831591 110831626 -11012230 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 5 1430 186 341 106 0 chr11 110831882 110831967 -11011889 + MIRb SINE MIR 49 142 -120 5 1430 235 152 22 0 chr11 110832135 110832181 -11011675 + CT-rich Low_complexity Low_complexity 1 47 0 5 1430 1100 27 64 5 chr11 110832181 110832402 -11011454 + (TTCCC)n Simple_repeat Simple_repeat 1 234 0 5 1430 664 42 32 0 chr11 110832730 110832825 -11011031 + (TTCTC)n Simple_repeat Simple_repeat 2 99 0 5 1430 741 163 7 44 chr11 110832843 110832978 -11010878 - B1_Mur3 SINE Alu -17 132 3 5 1430 37 52 0 0 chr11 110833474 110833532 -11010324 + AT_rich Low_complexity Low_complexity 1 58 0 5 1430 405 337 30 75 chr11 110833617 110833816 -11010040 - MLT1F2 LTR MaLR 0 560 371 5 1430 3433 30 2 0 chr11 110833869 110834264 -11009592 + MTA_Mm LTR MaLR 1 396 0 5 1430 369 58 0 0 chr11 110834298 110834350 -11009506 + (T)n Simple_repeat Simple_repeat 1 52 0 5 1430 828 221 49 25 chr11 110834458 110834662 -11009194 + B3 SINE B2 1 209 -7 5 1430 618 169 11 38 chr11 110836491 110836675 -11007181 + GA-rich Low_complexity Low_complexity 2 180 0 5 1430 728 307 50 68 chr11 110836707 110837046 -11006810 - MLT2C1 LTR ERVL -60 337 5 5 1430 5882 37 7 4 chr11 110837175 110837903 -11005953 + L1Md_F3 LINE L1 5841 6570 -14 5 1430 896 27 9 0 chr11 110837986 110838097 -11005759 + (TATG)n Simple_repeat Simple_repeat 1 112 0 5 1430 1879 273 37 7 chr11 110838129 110838878 -11004978 - Lx5 LINE L1 -38 7012 6483 5 1430 550 288 73 37 chr11 110839186 110839377 -11004479 - B4A SINE B4 -55 237 40 5 1430 3777 41 13 0 chr11 110840660 110841124 -11002732 - L1Md_F3 LINE L1 -2 6582 6113 5 1430 239 350 95 62 chr11 110841465 110841675 -11002181 - MLT2F LTR ERVL -106 557 341 5 1430 649 339 45 52 chr11 110842490 110842798 -11001058 - ORR1E LTR MaLR -53 306 1 5 1430 285 310 33 33 chr11 110844111 110844201 -10999655 - RMER15 LTR ERVL -115 460 371 5 1430 378 312 62 8 chr11 110844637 110844766 -10999090 + MER5A DNA MER1_type 51 186 -3 5 1430 1251 88 15 0 chr11 110845155 110845482 -10998374 + (TTCC)n Simple_repeat Simple_repeat 1 331 0 5 1430 1484 248 63 31 chr11 110845920 110846345 -10997511 + RMER13A LTR ERVK 1 439 -421 5 1430 467 278 43 17 chr11 110846324 110846435 -10997421 + RMER13A LTR ERVK 681 794 -66 5 1430 486 0 0 0 chr11 110846435 110846489 -10997367 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1430 488 16 0 16 chr11 110846513 110846575 -10997281 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 5 1430 261 57 0 0 chr11 110846576 110846611 -10997245 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1430 203 167 0 0 chr11 110846611 110846647 -10997209 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 5 1430 396 211 19 78 chr11 110848091 110848194 -10995662 - B1_Mur1 SINE Alu 0 149 53 5 1430 24 91 0 0 chr11 110848224 110848290 -10995566 + AT_rich Low_complexity Low_complexity 1 66 0 5 1430 378 107 0 0 chr11 110849464 110849520 -10994336 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1430 468 281 37 7 chr11 110849522 110849658 -10994198 + MER89 LTR ERV1 420 559 0 5 1430 25 0 0 0 chr11 110849992 110850017 -10993839 + AT_rich Low_complexity Low_complexity 1 25 0 5 1430 1743 287 61 35 chr11 110850148 110850881 -10992975 - Lx9 LINE L1 -457 7187 6436 5 1430 477 314 108 30 chr11 110852808 110853077 -10990779 + B4A SINE B4 1 290 -2 5 1430 325 107 17 51 chr11 110853116 110853175 -10990681 + HAL1-3A_ME LINE L1 1974 2030 -828 5 1430 231 271 17 0 chr11 110854101 110854160 -10989696 + MER63D DNA AcHobo 321 380 -681 5 1430 21 57 0 0 chr11 110854862 110854897 -10988959 + AT_rich Low_complexity Low_complexity 1 35 0 5 1430 820 205 76 0 chr11 110855411 110855621 -10988235 + RMER1C Other Other 1116 1341 -1 5 1430 446 267 91 129 chr11 110855633 110855865 -10987991 + ID_B1 SINE B4 2 224 0 5 1430 378 0 0 0 chr11 110856788 110856830 -10987026 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 1430 1079 103 6 0 chr11 110856830 110856986 -10986870 - B2_Mm1t SINE B2 -33 160 4 5 1430 265 350 50 7 chr11 110857107 110857248 -10986608 + Lx8 LINE L1 7182 7328 -145 5 1430 284 346 149 18 chr11 110857488 110857876 -10985980 + L2 LINE L2 1903 2341 -1078 5 1430 21 57 0 0 chr11 110859562 110859597 -10984259 + AT_rich Low_complexity Low_complexity 1 35 0 5 1430 425 342 20 33 chr11 110861017 110861168 -10982688 - B1F2 SINE Alu 0 149 1 5 1430 189 0 0 0 chr11 110861289 110861310 -10982546 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1430 235 300 28 14 chr11 110861583 110861654 -10982202 - L3 LINE CR1 -22 4467 4396 5 1430 267 114 0 0 chr11 110862058 110862102 -10981754 + (TTAA)n Simple_repeat Simple_repeat 3 46 0 5 1430 234 306 35 53 chr11 110863127 110863241 -10980615 + MIRb SINE MIR 80 191 -77 5 1430 468 0 0 0 chr11 110863914 110863966 -10979890 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1430 269 255 42 47 chr11 110863991 110864120 -10979736 - L1MA8 LINE L1 -133 6158 6027 5 1430 1026 272 36 0 chr11 110864161 110864440 -10979416 - B4A SINE B4 -3 289 1 5 1430 1333 285 83 12 chr11 110864794 110865438 -10978418 + Lx6 LINE L1 6455 7432 -28 5 1430 514 198 11 38 chr11 110865481 110865665 -10978191 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1430 493 187 11 45 chr11 110865698 110865877 -10977979 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 5 1430 835 233 27 43 chr11 110865946 110865963 -10977893 - B3 SINE B2 -27 189 176 5 1430 189 0 0 0 chr11 110865963 110865984 -10977872 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1430 835 233 27 43 chr11 110865984 110866154 -10977702 - B3 SINE B2 -41 175 5 5 1430 553 295 90 0 chr11 110866168 110866324 -10977532 - B3 SINE B2 -6 210 41 5 1430 278 293 101 0 chr11 110866348 110866447 -10977409 - PB1D7 SINE Alu -7 113 5 5 1430 568 152 195 9 chr11 110867181 110867294 -10976562 + B1_Mur2 SINE Alu 10 143 -6 5 1430 865 117 0 22 chr11 110867681 110867865 -10975991 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1430 300 192 0 0 chr11 110867867 110867966 -10975890 + CT-rich Low_complexity Low_complexity 2 100 0 5 1430 288 0 0 0 chr11 110867968 110868000 -10975856 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1430 549 0 0 0 chr11 110872621 110872682 -10971174 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1430 252 0 0 0 chr11 110872682 110872709 -10971147 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1430 776 281 89 41 chr11 110872731 110873002 -10970854 - B4A SINE B4 -8 284 1 5 1430 495 228 14 169 chr11 110873421 110873769 -10970087 - Lx9 LINE L1 -7 7637 7344 5 1430 835 258 41 36 chr11 110873958 110874179 -10969677 - ID_B1 SINE B4 0 224 3 5 1430 233 354 43 34 chr11 110874453 110874570 -10969286 - L2b LINE L2 -2 3373 3256 5 1430 289 311 72 106 chr11 110875358 110875520 -10968336 + B4A SINE B4 119 278 -14 5 1430 378 0 0 0 chr11 110875520 110875562 -10968294 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1430 351 0 0 0 chr11 110875562 110875600 -10968256 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1430 289 311 72 106 chr11 110875600 110875616 -10968240 + B4A SINE B4 279 291 -1 5 1430 3435 187 13 9 chr11 110877909 110878589 -10965267 - Lx2B LINE L1 -1 6999 6317 5 1430 291 257 13 13 chr11 110878678 110878753 -10965103 + (TATG)n Simple_repeat Simple_repeat 3 77 0 5 1430 293 315 108 108 chr11 110879787 110879972 -10963884 + B4A SINE B4 2 186 -38 5 1430 322 244 0 9 chr11 110880416 110880532 -10963324 + (CAGC)n Simple_repeat Simple_repeat 4 118 0 5 1430 2502 177 61 25 chr11 110880739 110881342 -10962514 + Lx3C LINE L1 6348 6972 -4 5 1430 700 259 80 16 chr11 110882376 110882564 -10961292 - B3 SINE B2 -6 210 11 5 1430 469 278 37 15 chr11 110882920 110883055 -10960801 - RSINE1 SINE B4 0 165 28 5 1430 181 75 24 24 chr11 110883791 110883832 -10960024 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 1430 379 123 25 0 chr11 110884261 110884342 -10959514 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 1431 21 0 0 0 chr11 110887418 110887439 -10956417 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 303 122 0 0 chr11 110888342 110888391 -10955465 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1431 459 0 0 0 chr11 110888391 110888442 -10955414 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1431 238 284 15 0 chr11 110888528 110888595 -10955261 + CT-rich Low_complexity Low_complexity 3 70 0 6 1431 510 17 0 0 chr11 110888834 110888893 -10954963 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1431 277 266 124 67 chr11 110889897 110890076 -10953780 - Lx8 LINE L1 -13 7460 7231 6 1431 216 0 0 0 chr11 110890076 110890100 -10953756 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1431 229 282 99 91 chr11 110890100 110890169 -10953687 - Lx8 LINE L1 -243 7230 7165 6 1431 23 0 0 0 chr11 110890608 110890631 -10953225 + AT_rich Low_complexity Low_complexity 1 23 0 6 1431 240 300 0 72 chr11 110890758 110890855 -10953001 + ZP3AR Satellite Satellite 39 128 -84 6 1431 1199 64 13 0 chr11 110890821 110890978 -10952878 + B2_Mm1t SINE B2 2 160 -33 6 1431 552 30 0 0 chr11 110890978 110891044 -10952812 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 6 1431 583 279 24 20 chr11 110891055 110891219 -10952637 + ID_B1 SINE B4 65 224 0 6 1431 935 239 14 23 chr11 110891224 110891442 -10952414 + B3 SINE B2 1 216 0 6 1431 5642 136 19 35 chr11 110892253 110893190 -10950666 + Lx2B LINE L1 6077 6998 -2 6 1431 27 0 0 0 chr11 110893266 110893293 -10950563 + AT_rich Low_complexity Low_complexity 1 27 0 6 1431 505 309 50 67 chr11 110893368 110893412 -10950444 + B3 SINE B2 40 82 -134 6 1431 2308 199 42 60 chr11 110893412 110893983 -10949873 + RLTR31_Mm LTR ERVK 1 561 0 6 1431 505 309 50 67 chr11 110893983 110894118 -10949738 + B3 SINE B2 83 216 0 6 1431 2075 92 3 61 chr11 110894243 110894554 -10949302 - ORR1A2 LTR MaLR -6 321 29 6 1431 6469 168 48 23 chr11 110894531 110895833 -10948023 - ORR1A2-int LTR MaLR -458 1334 1 6 1431 2153 76 38 38 chr11 110895837 110896152 -10947704 - ORR1A2 LTR MaLR -8 319 5 6 1431 643 319 86 33 chr11 110896154 110896397 -10947459 + B4 SINE B4 35 290 -2 6 1431 234 0 0 0 chr11 110896619 110896645 -10947211 + (AGTAG)n Simple_repeat Simple_repeat 4 29 0 6 1431 2479 157 42 1 chr11 110897364 110897812 -10946044 + MERVL_2A-int LTR ERVL 1034 1611 -4150 6 1431 183 72 47 23 chr11 110897840 110897883 -10945973 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1431 258 367 36 7 chr11 110898107 110898247 -10945609 + MIR SINE MIR 106 249 -13 6 1431 908 289 40 8 chr11 110898907 110899155 -10944701 - B4 SINE B4 -32 260 5 6 1431 540 68 0 0 chr11 110899260 110899333 -10944523 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1431 429 54 0 0 chr11 110899526 110899582 -10944274 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1431 359 71 45 45 chr11 110899585 110899674 -10944182 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 6 1431 3578 57 73 0 chr11 110899781 110900220 -10943636 + MT2C_Mm LTR ERVL 3 473 -2 6 1431 8225 88 8 7 chr11 110900224 110901082 -10942774 + MTA_Mm-int LTR MaLR 3 861 -237 6 1431 1313 48 0 0 chr11 110901082 110901229 -10942627 - B1_Mm SINE Alu 0 147 1 6 1431 8225 88 8 7 chr11 110901229 110901465 -10942391 + MTA_Mm-int LTR MaLR 862 1098 0 6 1431 3297 58 2 37 chr11 110901465 110901875 -10941981 + MTA_Mm LTR MaLR 1 396 0 6 1431 791 329 63 3 chr11 110901894 110902193 -10941663 + Lx8 LINE L1 7148 7464 -9 6 1431 700 326 69 22 chr11 110903298 110903618 -10940238 - Lx8 LINE L1 0 7473 7139 6 1431 276 310 0 0 chr11 110904596 110904706 -10939150 + (TCCA)n Simple_repeat Simple_repeat 1 110 0 6 1431 911 294 35 61 chr11 110904727 110905094 -10938762 + MTE2b LTR MaLR 11 366 -4 6 1431 218 316 134 22 chr11 110905206 110905352 -10938504 + MIRm SINE MIR 43 205 -63 6 1431 231 167 0 57 chr11 110905415 110905485 -10938371 + A-rich Low_complexity Low_complexity 3 68 0 6 1431 193 200 0 44 chr11 110905868 110905936 -10937920 + C-rich Low_complexity Low_complexity 4 68 0 6 1431 927 109 0 0 chr11 110907138 110907276 -10936580 + (TTCC)n Simple_repeat Simple_repeat 3 140 0 6 1431 242 267 33 0 chr11 110907430 110907490 -10936366 + B1F SINE Alu 1 62 -87 6 1431 228 301 68 0 chr11 110907490 110907503 -10936353 + ID_B1 SINE B4 82 159 -65 6 1431 423 0 0 0 chr11 110907912 110907959 -10935897 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 6 1431 1087 249 18 26 chr11 110909346 110909618 -10934238 + MTD LTR MaLR 14 283 -136 6 1431 265 339 32 56 chr11 110909692 110909817 -10934039 + MTE2b LTR MaLR 19 140 -239 6 1431 735 267 5 35 chr11 110909879 110910081 -10933775 + MT2A LTR ERVL 227 422 -111 6 1431 556 291 15 7 chr11 110910907 110911042 -10932814 + B3 SINE B2 5 140 -76 6 1431 243 0 0 0 chr11 110911137 110911164 -10932692 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 1431 309 100 0 0 chr11 110911164 110911214 -10932642 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1431 823 320 28 16 chr11 110911252 110911506 -10932350 - B4A SINE B4 -10 282 26 6 1431 272 333 125 33 chr11 110912031 110912094 -10931762 - ORR1D2 LTR MaLR 0 370 297 6 1431 572 40 13 0 chr11 110912094 110912169 -10931687 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1431 272 333 125 33 chr11 110912169 110912257 -10931599 - ORR1D2 LTR MaLR -74 296 205 6 1431 347 160 11 0 chr11 110912257 110912351 -10931505 + GA-rich Low_complexity Low_complexity 2 96 0 6 1431 680 299 37 40 chr11 110912352 110912624 -10931232 - ORR1E LTR MaLR -88 271 1 6 1431 374 296 0 22 chr11 110912709 110912844 -10931012 - L1MA4 LINE L1 -371 5929 5798 6 1431 435 38 0 0 chr11 110912977 110913030 -10930826 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1431 5874 116 20 7 chr11 110913092 110913983 -10929873 + Lx3C LINE L1 6008 6910 -66 6 1431 1591 247 27 11 chr11 110914828 110915217 -10928639 + MTD LTR MaLR 21 405 -14 6 1431 180 179 14 43 chr11 110916129 110916199 -10927657 + CT-rich Low_complexity Low_complexity 3 70 0 6 1431 477 0 0 0 chr11 110917182 110917235 -10926621 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1431 328 109 0 0 chr11 110918719 110918765 -10925091 - HAL1-3A_ME LINE L1 -835 2023 1978 6 1431 320 235 30 12 chr11 110918766 110918930 -10924926 + (TG)n Simple_repeat Simple_repeat 2 168 0 6 1431 517 182 22 11 chr11 110918955 110919133 -10924723 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1431 431 201 24 0 chr11 110919146 110919315 -10924541 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 1431 759 301 35 103 chr11 110919365 110919676 -10924180 - B4A SINE B4 -2 290 1 6 1431 526 88 0 12 chr11 110920168 110920289 -10923567 + L1Md_F2 LINE L1 6500 6582 0 6 1431 1003 228 20 5 chr11 110920792 110920995 -10922861 - B3 SINE B2 -9 207 2 6 1431 309 51 0 0 chr11 110921060 110921099 -10922757 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1431 280 323 0 0 chr11 110922428 110922521 -10921335 + Tigger15a DNA TcMar 176 268 -447 6 1431 3986 35 28 25 chr11 110923624 110924097 -10919759 + MT2C_Mm LTR ERVL 1 474 -1 6 1431 185 0 40 0 chr11 110924216 110924241 -10919615 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 1431 323 45 0 22 chr11 110924480 110924526 -10919330 + (TTA)n Simple_repeat Simple_repeat 3 47 0 6 1431 330 218 0 68 chr11 110924883 110925016 -10918840 + RMER17A LTR ERVK 323 446 -305 6 1431 186 43 0 0 chr11 110926776 110926799 -10917057 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1431 237 33 0 0 chr11 110928736 110928766 -10915090 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1431 185 35 69 0 chr11 110928939 110928968 -10914888 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1431 198 0 0 0 chr11 110929559 110929581 -10914275 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1431 499 115 61 9 chr11 110931534 110931648 -10912208 + CT-rich Low_complexity Low_complexity 2 121 0 6 1431 306 0 0 0 chr11 110932638 110932672 -10911184 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1431 45 0 0 0 chr11 110932951 110932996 -10910860 + AT_rich Low_complexity Low_complexity 1 45 0 6 1431 369 86 0 0 chr11 110934989 110935047 -10908809 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1431 351 141 0 0 chr11 110935184 110935248 -10908608 + (T)n Simple_repeat Simple_repeat 1 64 0 6 1431 498 17 0 0 chr11 110935742 110935801 -10908055 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1431 196 111 44 0 chr11 110936821 110936866 -10906990 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1431 33 66 0 0 chr11 110938075 110938136 -10905720 + AT_rich Low_complexity Low_complexity 1 61 0 6 1431 715 292 34 19 chr11 110938492 110938698 -10905158 - ID_B1 SINE B4 -10 214 6 6 1431 187 339 107 0 chr11 110939089 110939145 -10904711 - MIRc SINE MIR -116 152 91 6 1431 243 0 0 0 chr11 110939314 110939341 -10904515 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1431 27 0 0 0 chr11 110939946 110939973 -10903883 + AT_rich Low_complexity Low_complexity 1 27 0 6 1431 1670 226 34 3 chr11 110939976 110940326 -10903530 - MTD LTR MaLR -56 363 3 6 1431 383 198 51 1 chr11 110940380 110940479 -10903377 - L1MA4A LINE L1 -402 5901 5727 6 1431 280 251 113 73 chr11 110941624 110941722 -10902134 - PB1D10 SINE Alu -37 112 14 6 1431 243 287 101 152 chr11 110942341 110942528 -10901328 + B4A SINE B4 8 185 -107 6 1431 326 248 69 6 chr11 110942597 110942703 -10901153 + RSINE1 SINE B4 78 282 -10 6 1431 192 152 0 0 chr11 110944641 110944674 -10899182 + A-rich Low_complexity Low_complexity 1 33 0 6 1431 306 0 0 0 chr11 110944805 110944839 -10899017 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1431 483 18 0 0 chr11 110945438 110945494 -10898362 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1431 295 290 50 88 chr11 110945836 110945995 -10897861 - RMER10B LTR ERVL -51 347 195 6 1431 897 289 19 23 chr11 110946056 110946272 -10897584 - ID_B1 SINE B4 -9 215 1 6 1431 186 103 0 0 chr11 110946997 110947026 -10896830 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1431 303 93 0 0 chr11 110947134 110947177 -10896679 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1431 905 104 82 7 chr11 110947177 110947312 -10896544 - B1_Mm SINE Alu 0 147 3 6 1431 856 330 18 18 chr11 110947532 110947813 -10896043 + B4A SINE B4 10 290 -2 6 1431 23 0 0 0 chr11 110949021 110949044 -10894812 + AT_rich Low_complexity Low_complexity 1 23 0 6 1431 288 229 0 0 chr11 110949086 110949169 -10894687 + GA-rich Low_complexity Low_complexity 1 83 0 7 1431 377 109 16 0 chr11 110949177 110949241 -10894615 + (CAGG)n Simple_repeat Simple_repeat 2 66 0 7 1431 447 259 21 43 chr11 110949720 110949861 -10893995 + B1_Mur1 SINE Alu 2 139 -10 7 1431 231 292 0 100 chr11 110951021 110951101 -10892755 + ID_B1 SINE B4 85 156 -68 7 1431 197 352 123 31 chr11 110951883 110952144 -10891712 - L2 LINE L2 -557 2862 2578 7 1431 1214 179 9 22 chr11 110953029 110953258 -10890598 - URR1A DNA MER1_type 0 226 1 7 1431 3851 176 11 8 chr11 110953582 110954302 -10889554 - Lx2B LINE L1 -1 6999 6278 7 1431 348 312 62 15 chr11 110955427 110955557 -10888299 - B1_Mur1 SINE Alu -13 136 1 7 1431 24 0 0 0 chr11 110956425 110956449 -10887407 + AT_rich Low_complexity Low_complexity 1 24 0 7 1431 396 0 0 0 chr11 110956862 110956906 -10886950 + (ATTG)n Simple_repeat Simple_repeat 1 44 0 7 1431 259 390 8 8 chr11 110956913 110957032 -10886824 - B1_Mus1 SINE Alu -10 138 20 7 1431 319 359 81 20 chr11 110957112 110957260 -10886596 - RSINE1 SINE B4 -7 158 2 7 1431 258 291 48 19 chr11 110958696 110958801 -10885055 + MER44D DNA MER2_type 9 116 -589 7 1431 253 341 35 0 chr11 110958898 110958983 -10884873 + MER44D DNA MER2_type 604 691 -14 7 1431 547 102 0 30 chr11 110959130 110959137 -10884719 + (TCCCC)n Simple_repeat Simple_repeat 2 8 0 7 1431 1389 61 0 0 chr11 110959137 110959317 -10884539 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1431 547 102 0 30 chr11 110959317 110959410 -10884446 + (TCCCC)n Simple_repeat Simple_repeat 2 91 0 7 1431 198 191 0 0 chr11 110959430 110959472 -10884384 + CT-rich Low_complexity Low_complexity 4 45 0 7 1431 228 256 47 0 chr11 110959818 110959904 -10883952 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 1431 232 362 31 16 chr11 110959918 110960047 -10883809 + MIRb SINE MIR 116 246 -22 7 1431 1296 219 93 5 chr11 110960194 110960570 -10883286 + Lx9 LINE L1 7225 7633 -11 7 1431 586 349 4 75 chr11 110960634 110960702 -10883154 + ID SINE ID 5 61 -163 7 1431 439 284 155 21 chr11 110960702 110960856 -10883000 + B3 SINE B2 2 169 -47 7 1431 369 0 0 0 chr11 110960856 110960897 -10882959 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1431 439 284 155 21 chr11 110960897 110960929 -10882927 + B3 SINE B2 170 212 -4 7 1431 586 349 4 75 chr11 110960929 110961086 -10882770 + ID_B1 SINE B4 62 214 -10 7 1431 264 175 0 0 chr11 110961086 110961149 -10882707 + (CAT)n Simple_repeat Simple_repeat 3 65 0 7 1431 210 71 0 0 chr11 110962357 110962385 -10881471 + (TGG)n Simple_repeat Simple_repeat 3 30 0 7 1431 253 292 92 0 chr11 110963269 110963334 -10880522 + PB1D7 SINE Alu 32 102 -18 7 1431 713 70 10 0 chr11 110963694 110963794 -10880062 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 7 1431 541 289 185 23 chr11 110964384 110964489 -10879367 + MTD LTR MaLR 1 105 -291 7 1431 2008 20 20 28 chr11 110964489 110964744 -10879112 - L1Md_F3 LINE L1 0 6584 6332 7 1431 766 246 131 2 chr11 110964744 110964982 -10878874 + MTD LTR MaLR 106 419 0 7 1431 1171 63 0 0 chr11 110965019 110965162 -10878694 + B1_Mus2 SINE Alu 2 144 -3 7 1431 423 0 0 0 chr11 110965162 110965209 -10878647 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1431 1141 317 96 14 chr11 110965723 110966315 -10877541 + Lx8 LINE L1 6807 7447 -26 7 1431 690 330 9 41 chr11 110966609 110966830 -10877026 - B3 SINE B2 -2 214 1 7 1431 347 218 10 0 chr11 110966940 110967041 -10876815 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 1431 460 226 0 142 chr11 110967041 110967175 -10876681 - B4A SINE B4 0 292 178 7 1431 2871 124 9 11 chr11 110967200 110967665 -10876191 + Lx2 LINE L1 6238 6701 -296 7 1431 653 147 193 0 chr11 110967679 110967829 -10876027 - Lx2 LINE L1 -22 6975 6797 7 1431 461 173 0 0 chr11 110967813 110967888 -10875968 - Lx2 LINE L1 -685 6312 6238 7 1431 385 290 11 0 chr11 110967913 110968006 -10875850 + B4A SINE B4 178 271 -21 7 1431 636 14 0 0 chr11 110968019 110968092 -10875764 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1431 1716 123 63 0 chr11 110968092 110968361 -10875495 + Lx2 LINE L1 6709 6994 -3 7 1431 260 378 91 15 chr11 110969109 110969308 -10874548 - MIR SINE MIR -28 234 21 7 1431 22 35 0 0 chr11 110971115 110971144 -10872712 + AT_rich Low_complexity Low_complexity 1 29 0 7 1431 215 314 0 0 chr11 110971214 110971265 -10872591 - ID4_ SINE ID -4 79 29 7 1431 1001 212 16 0 chr11 110971322 110971511 -10872345 - B3 SINE B2 0 216 25 7 1431 219 146 0 0 chr11 110971700 110971741 -10872115 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1431 252 0 0 0 chr11 110972051 110972079 -10871777 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1431 378 330 10 5 chr11 110972292 110972490 -10871366 + L1M1 LINE L1 5556 5754 -546 7 1431 342 0 0 0 chr11 110972490 110972528 -10871328 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1431 228 314 7 110 chr11 110972596 110972719 -10871137 + RMER12 LTR ERVK 719 830 -492 7 1431 258 32 0 0 chr11 110972719 110972750 -10871106 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1431 228 314 7 110 chr11 110972750 110972762 -10871094 + RMER12 LTR ERVK 831 840 -482 7 1431 549 293 36 81 chr11 110973782 110974005 -10869851 - B4 SINE B4 -78 214 2 7 1431 383 220 235 0 chr11 110975350 110975482 -10868374 + Lx8 LINE L1 7259 7421 -52 7 1431 1094 256 26 8 chr11 110975497 110975761 -10868095 + Lx5 LINE L1 6771 7039 -11 7 1431 486 0 0 0 chr11 110976265 110976319 -10867537 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1431 276 237 0 17 chr11 110976401 110976461 -10867395 + C-rich Low_complexity Low_complexity 2 60 0 7 1431 259 108 15 30 chr11 110976961 110977028 -10866828 + A-rich Low_complexity Low_complexity 1 66 0 7 1431 244 308 146 53 chr11 110977081 110977232 -10866624 + MER58A DNA MER1_type 45 209 -15 7 1431 260 370 78 42 chr11 110978842 110979059 -10864797 - MER115 DNA Tip100 -104 589 365 7 1431 798 217 35 0 chr11 110979448 110979646 -10864210 - Lx5 LINE L1 -939 6111 5907 7 1431 2166 172 61 0 chr11 110979728 110980123 -10863733 - MTC LTR MaLR -2 419 1 7 1431 3527 79 12 8 chr11 110981039 110981526 -10862330 - L1Md_F2 LINE L1 0 6582 6094 7 1431 1634 67 4 0 chr11 110981527 110981752 -10862104 + L1Md_F2 LINE L1 5870 6095 -487 7 1431 315 0 0 0 chr11 110983617 110983652 -10860204 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1431 784 285 87 31 chr11 110984681 110984935 -10858921 + B4A SINE B4 2 269 -23 7 1431 279 0 0 0 chr11 110984935 110984966 -10858890 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1431 554 0 15 0 chr11 110984966 110985031 -10858825 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1431 213 292 126 50 chr11 110986282 110986401 -10857455 + B1_Mur1 SINE Alu 15 142 -7 7 1431 702 275 50 0 chr11 110986299 110986459 -10857397 + B4A SINE B4 118 285 -7 7 1431 225 191 0 0 chr11 110987705 110987752 -10856104 + (TTA)n Simple_repeat Simple_repeat 1 47 0 7 1431 628 300 67 16 chr11 110987761 110987954 -10855902 - B4A SINE B4 -88 204 2 7 1431 519 45 0 0 chr11 110988347 110988413 -10855443 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1431 486 0 0 0 chr11 110988413 110988466 -10855390 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 1431 195 129 0 0 chr11 110988467 110988498 -10855358 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 7 1431 244 326 0 39 chr11 110988749 110988851 -10855005 + CT-rich Low_complexity Low_complexity 3 100 0 7 1431 232 300 0 0 chr11 110988909 110988959 -10854897 - ID2 SINE ID -29 54 5 7 1431 1058 128 0 11 chr11 110988980 110989162 -10854694 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 7 1431 250 384 26 21 chr11 110990064 110990253 -10853603 - L2 LINE L2 -952 2467 2278 7 1431 185 0 40 0 chr11 110991727 110991752 -10852104 + (CAAAT)n Simple_repeat Simple_repeat 2 27 0 7 1431 226 337 80 10 chr11 110991842 110992043 -10851813 + L1M3 LINE L1 5674 5888 -280 7 1431 652 296 9 27 chr11 110993088 110993307 -10850549 + B3 SINE B2 1 215 -1 7 1431 2888 83 37 0 chr11 110993360 110993793 -10850063 - L1_Mur1 LINE L1 -218 5668 5220 7 1431 1870 212 63 36 chr11 110995543 110995988 -10847868 - RLTR20A LTR ERVK 0 541 85 7 1431 258 400 9 9 chr11 110995995 110996207 -10847649 + Lx8 LINE L1 7111 7322 -151 7 1431 1223 285 74 41 chr11 110996231 110996747 -10847109 + MT2A LTR ERVL 1 533 0 7 1431 21 36 0 0 chr11 110996815 110996843 -10847013 + AT_rich Low_complexity Low_complexity 1 28 0 7 1431 187 106 20 41 chr11 110997468 110997517 -10846339 + T-rich Low_complexity Low_complexity 6 53 0 7 1431 1132 75 7 0 chr11 110997517 110997663 -10846193 - B1_Mus1 SINE Alu 0 148 2 7 1431 509 272 57 11 chr11 110998037 110998212 -10845644 + B3A SINE B2 2 184 -14 7 1431 286 284 121 24 chr11 110998513 110998679 -10845177 - MLT1F1 LTR MaLR -22 547 366 7 1431 22 0 0 0 chr11 110999392 110999414 -10844442 + AT_rich Low_complexity Low_complexity 1 22 0 7 1431 850 289 153 19 chr11 110999423 110999783 -10844073 - MTD LTR MaLR 0 419 12 7 1431 619 181 174 0 chr11 110999848 110999986 -10843870 + URR1A DNA MER1_type 1 162 -64 7 1431 1400 279 48 21 chr11 111000000 111000483 -10843373 + RLTR12B LTR ERVK 14 509 -19 1 1431 360 241 25 0 chr11 111000516 111000595 -10843261 + URR1B DNA MER1_type 145 225 0 2 1431 884 285 102 12 chr11 111001985 111002320 -10841536 - MTD LTR MaLR -23 398 18 3 1431 363 279 171 0 chr11 111002545 111002674 -10841182 - MER5A1 DNA MER1_type -14 152 2 4 1431 627 266 73 45 chr11 111002830 111002902 -10840954 + ID SINE ID 2 78 -146 5 1431 343 330 43 43 chr11 111002902 111003019 -10840837 + B1F1 SINE Alu 1 117 -32 6 1431 706 306 6 6 chr11 111003426 111003597 -10840259 + B3 SINE B2 36 206 -10 7 1431 434 242 22 0 chr11 111003686 111003777 -10840079 + B3A SINE B2 1 93 -105 8 1431 243 0 0 0 chr11 111003778 111003805 -10840051 + (CATA)n Simple_repeat Simple_repeat 1 27 0 9 1431 2621 184 22 59 chr11 111003909 111004152 -10839704 - RMER6C LTR ERVK -11 679 440 1 1431 382 15 75 0 chr11 111004152 111004219 -10839637 + (CAA)n Simple_repeat Simple_repeat 1 72 0 1 1431 2621 171 226 54 chr11 111004219 111004598 -10839258 - RMER6C LTR ERVK -251 439 1 1 1431 511 95 39 31 chr11 111005440 111005570 -10838286 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 1 1431 426 239 0 0 chr11 111005577 111005690 -10838166 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 1431 341 242 11 0 chr11 111006731 111006826 -10837030 + Lx9 LINE L1 7548 7643 -1 1 1431 185 378 24 12 chr11 111007163 111007246 -10836610 + MIRb SINE MIR 36 119 -149 1 1431 230 375 26 18 chr11 111007465 111007579 -10836277 - L2a LINE L2 -38 3388 3274 1 1431 612 335 147 64 chr11 111007695 111008151 -10835705 + MLT1D LTR MaLR 1 494 -11 1 1431 1109 282 6 13 chr11 111008280 111008596 -10835260 + Lx8 LINE L1 6587 6900 -573 1 1431 322 236 0 0 chr11 111008610 111008682 -10835174 + Lx8 LINE L1 7048 7119 -354 1 1431 973 129 56 6 chr11 111009655 111009834 -10834022 + Lx2A LINE L1 6819 7006 -2 1 1431 225 308 209 55 chr11 111011100 111011210 -10832646 - B1F2 SINE Alu -16 133 7 2 1431 1633 216 69 5 chr11 111012344 111012734 -10831122 - MTD LTR MaLR 0 419 5 2 1431 31 26 0 0 chr11 111012924 111012962 -10830894 + AT_rich Low_complexity Low_complexity 1 38 0 2 1431 21 0 0 0 chr11 111013080 111013101 -10830755 + AT_rich Low_complexity Low_complexity 1 21 0 2 1431 200 357 14 6 chr11 111013200 111013292 -10830564 + MIR SINE MIR 23 113 -155 2 1431 639 309 99 0 chr11 111013519 111013720 -10830136 - ORR1D2 LTR MaLR -4 366 146 2 1431 326 297 36 72 chr11 111014178 111014345 -10829511 + RSINE1 SINE B4 5 165 0 2 1431 408 248 107 33 chr11 111014549 111014670 -10829186 - ID_B1 SINE B4 -8 216 87 2 1431 380 290 48 54 chr11 111015957 111016143 -10827713 - MLT1B LTR MaLR -4 386 202 2 1431 609 52 0 0 chr11 111017026 111017103 -10826753 + (TCTCCC)n Simple_repeat Simple_repeat 2 78 0 2 1432 635 333 63 100 chr11 111018417 111018847 -10825009 + MLT1F2 LTR MaLR 5 418 -142 3 1432 780 299 54 14 chr11 111018907 111019185 -10824671 - B4 SINE B4 -2 290 2 3 1432 375 314 58 7 chr11 111019187 111019325 -10824531 + MLT1F2 LTR MaLR 520 664 -16 3 1432 246 337 113 33 chr11 111020366 111020578 -10823278 - MER58B DNA MER1_type -37 304 76 3 1432 908 274 18 23 chr11 111020581 111020798 -10823058 + ID_B1 SINE B4 6 221 -3 3 1432 247 294 0 12 chr11 111021613 111021699 -10822157 + CT-rich Low_complexity Low_complexity 4 88 0 3 1432 414 0 0 0 chr11 111022219 111022265 -10821591 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1432 219 239 13 78 chr11 111023812 111023889 -10819967 - B2_Mm1a SINE B2 -69 124 53 3 1432 1326 215 129 21 chr11 111024096 111024429 -10819427 - ORR1D1 LTR MaLR -5 369 1 3 1432 5076 56 2 5 chr11 111024643 111025288 -10818568 + L1Md_F2 LINE L1 5939 6581 -1 3 1432 510 318 13 0 chr11 111025427 111025578 -10818278 + RSINE1 SINE B4 1 153 -12 3 1432 732 194 29 0 chr11 111027518 111027657 -10816199 + B1_Mur4 SINE Alu 3 145 -5 4 1432 258 105 0 0 chr11 111027671 111027709 -10816147 + (GGAA)n Simple_repeat Simple_repeat 4 41 0 4 1432 369 294 112 12 chr11 111027803 111028014 -10815842 + B4 SINE B4 2 228 -64 4 1432 700 290 52 0 chr11 111028014 111028207 -10815649 + B3 SINE B2 1 203 -13 4 1432 338 286 108 23 chr11 111028207 111028221 -10815635 + B4A SINE B4 229 242 -50 4 1432 897 302 127 16 chr11 111028840 111029203 -10814653 - MTD LTR MaLR -14 405 3 4 1432 433 306 93 56 chr11 111029309 111029560 -10814296 + MTD LTR MaLR 29 288 -119 4 1432 1947 279 69 19 chr11 111029735 111030527 -10813329 + Lx8 LINE L1 6582 7413 -60 4 1432 432 55 0 0 chr11 111032394 111032449 -10811407 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1432 328 341 73 8 chr11 111032456 111032580 -10811276 - RSINE1 SINE B4 -31 134 3 4 1432 4079 183 93 19 chr11 111032864 111034059 -10809797 + Lx5 LINE L1 5761 7047 -3 4 1432 191 167 24 0 chr11 111034104 111034146 -10809710 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 5 1432 409 299 61 27 chr11 111034146 111034442 -10809414 - L1MA5 LINE L1 -61 6239 5934 5 1432 312 361 73 85 chr11 111034636 111034758 -10809098 - MT2A LTR ERVL -90 443 316 5 1432 528 16 0 0 chr11 111034758 111034819 -10809037 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 5 1432 312 361 73 85 chr11 111034819 111034923 -10808933 - MT2A LTR ERVL -218 315 93 5 1432 336 341 83 65 chr11 111034923 111035055 -10808801 - MTEa LTR MaLR -155 224 87 5 1432 7078 92 34 2 chr11 111035055 111036068 -10807788 + Lx3_Mus LINE L1 5965 7009 0 5 1432 312 361 73 85 chr11 111036068 111036144 -10807712 - MT2A LTR ERVL -441 92 13 5 1432 381 149 0 0 chr11 111036844 111036911 -10806945 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1432 252 0 0 0 chr11 111037165 111037193 -10806663 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1432 350 297 83 83 chr11 111039194 111039240 -10804616 + B4A SINE B4 1 38 -254 5 1432 993 260 65 65 chr11 111039240 111039655 -10804201 + MTD LTR MaLR 5 419 0 5 1432 350 297 83 83 chr11 111039655 111039861 -10803995 + B4A SINE B4 39 253 -39 5 1432 670 205 0 0 chr11 111039863 111039985 -10803871 - Lx5 LINE L1 -719 6331 6210 6 1432 930 324 76 34 chr11 111040075 111040894 -10802962 + L1M2 LINE L1 4427 5279 -864 6 1432 861 247 0 36 chr11 111040951 111041144 -10802712 + B3 SINE B2 7 192 -24 6 1432 414 57 0 0 chr11 111041153 111041206 -10802650 + (TAAAA)n Simple_repeat Simple_repeat 1 53 0 6 1432 682 244 29 35 chr11 111041642 111041812 -10802044 - B3A SINE B2 -16 182 14 6 1432 768 237 35 6 chr11 111042835 111043005 -10800851 - B3 SINE B2 -37 179 5 6 1432 935 226 38 9 chr11 111043376 111043586 -10800270 - B3 SINE B2 0 216 1 6 1432 2927 27 0 0 chr11 111043824 111044161 -10799695 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1432 52981 23 13 7 chr11 111044161 111050594 -10793262 + IAPEz-int LTR ERVK 8 6481 0 6 1432 2927 27 0 0 chr11 111050594 111050931 -10792925 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1432 325 308 61 76 chr11 111051220 111051417 -10792439 + B3A SINE B2 5 198 0 6 1432 872 282 5 0 chr11 111051423 111051618 -10792238 + B3 SINE B2 16 211 -5 6 1432 384 318 28 0 chr11 111052248 111052355 -10791501 - RSINE1 SINE B4 -52 113 4 7 1432 1086 61 0 45 chr11 111052642 111052796 -10791060 - B1_Mus2 SINE Alu 0 147 1 7 1432 16891 51 4 1 chr11 111052873 111055847 -10788009 - L1Md_F3 LINE L1 0 6584 3601 7 1432 201 136 68 0 chr11 111055860 111055904 -10787952 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 7 1432 240 284 104 10 chr11 111057423 111057519 -10786337 - ORR1E LTR MaLR -254 105 1 7 1432 306 0 0 0 chr11 111059529 111059563 -10784293 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1432 411 21 0 0 chr11 111059563 111059610 -10784246 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1432 854 304 41 19 chr11 111059637 111060002 -10783854 + Lx8 LINE L1 6631 7003 -470 7 1432 258 326 135 5 chr11 111059992 111060009 -10783847 + Lx8 LINE L1 7214 7230 -243 7 1432 345 24 0 0 chr11 111060009 111060051 -10783805 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 7 1432 258 326 135 5 chr11 111060051 111060255 -10783601 + Lx8 LINE L1 7231 7464 -9 7 1432 351 0 0 0 chr11 111060876 111060915 -10782941 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 7 1432 212 294 44 0 chr11 111061017 111061085 -10782771 + RSINE1 SINE B4 91 161 -4 8 1432 186 43 0 0 chr11 111061086 111061109 -10782747 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 8 1432 594 117 0 0 chr11 111061109 111061219 -10782637 + (CA)n Simple_repeat Simple_repeat 2 112 0 8 1432 316 291 38 0 chr11 111061246 111061325 -10782531 + RSINE1 SINE B4 84 165 0 8 1432 439 348 0 29 chr11 111062542 111062681 -10781175 + RSINE1 SINE B4 3 137 -28 8 1432 635 256 29 86 chr11 111064136 111064345 -10779511 - B3A SINE B2 0 198 2 8 1432 491 287 144 34 chr11 111064839 111065276 -10778580 + Lx9 LINE L1 7133 7617 -27 8 1432 196 30 29 29 chr11 111065407 111065441 -10778415 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 8 1432 421 331 62 17 chr11 111065462 111065640 -10778216 + Lx8 LINE L1 7071 7256 -217 8 1432 992 97 13 52 chr11 111065714 111065856 -10778000 + B1_Mus1 SINE Alu 2 141 -7 8 1432 321 93 0 0 chr11 111065856 111065910 -10777946 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 9 1432 536 295 71 20 chr11 111066031 111066228 -10777628 - RMER15 LTR ERVL -19 556 350 9 1432 4151 72 0 14 chr11 111066416 111066995 -10776861 - L1Md_F2 LINE L1 0 6582 6041 9 1432 379 266 129 100 chr11 111067508 111067802 -10776054 + ORR1E LTR MaLR 1 332 -47 9 1432 1305 42 0 0 chr11 111067802 111067967 -10775889 - L1Md_F2 LINE L1 -14 6568 6404 9 1432 282 328 65 29 chr11 111067967 111068015 -10775841 + ORR1E LTR MaLR 333 379 0 9 1432 1415 269 18 0 chr11 111068023 111068413 -10775443 - Lx9 LINE L1 -262 7382 6986 9 1432 237 132 26 0 chr11 111068431 111068469 -10775387 + RMER6C LTR ERVK 1 39 -681 9 1432 405 222 71 0 chr11 111068479 111068578 -10775278 + MT2B LTR ERVL 181 286 -315 9 1432 286 312 0 88 chr11 111068510 111068612 -10775244 + ID_B1 SINE B4 47 139 -85 9 1432 1613 165 73 18 chr11 111068645 111068722 -10775134 + RMER6C LTR ERVK 346 430 -260 9 1432 207 0 0 0 chr11 111068722 111068745 -10775111 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1432 477 0 0 0 chr11 111068745 111068797 -10775059 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1432 1613 165 73 18 chr11 111068797 111069045 -10774811 + RMER6C LTR ERVK 431 689 -1 9 1432 658 310 11 17 chr11 111069249 111069426 -10774430 - B3 SINE B2 -35 181 6 1 1432 28 48 0 0 chr11 111069507 111069549 -10774307 + AT_rich Low_complexity Low_complexity 1 42 0 1 1432 780 291 43 5 chr11 111069551 111069758 -10774098 + B3 SINE B2 2 216 0 1 1432 546 43 0 0 chr11 111070118 111070187 -10773669 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1432 191 32 0 61 chr11 111070434 111070467 -10773389 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 1 1432 1723 132 86 26 chr11 111071261 111071565 -10772291 - ORR1A2 LTR MaLR 0 327 6 1 1432 456 93 0 0 chr11 111071581 111071656 -10772200 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 1 1432 282 29 0 0 chr11 111071656 111071691 -10772165 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1432 549 80 0 0 chr11 111072315 111072390 -10771466 + (TTTTC)n Simple_repeat Simple_repeat 5 79 0 1 1432 836 159 17 6 chr11 111072392 111072569 -10771287 + CT-rich Low_complexity Low_complexity 1 179 0 1 1432 417 39 0 0 chr11 111072569 111072620 -10771236 + (TCCC)n Simple_repeat Simple_repeat 2 52 0 1 1432 340 333 167 0 chr11 111073007 111073169 -10770687 - B4A SINE B4 -8 284 96 1 1432 21 0 0 0 chr11 111073272 111073293 -10770563 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 1725 168 14 69 chr11 111073403 111073837 -10770019 - RMER17C LTR ERVK 0 410 1 1 1432 243 0 0 0 chr11 111075667 111075694 -10768162 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1432 225 139 0 0 chr11 111075883 111075926 -10767930 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1432 273 57 0 0 chr11 111076113 111076148 -10767708 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1432 298 330 0 11 chr11 111076882 111076971 -10766885 + PB1D10 SINE Alu 1 88 -29 1 1432 3057 12 0 0 chr11 111076973 111077310 -10766546 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1432 54016 19 8 5 chr11 111077310 111083767 -10760089 - IAPEz-int LTR ERVK 0 6481 8 1 1432 3044 12 0 0 chr11 111083767 111084104 -10759752 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1432 285 318 0 0 chr11 111084178 111084244 -10759612 + ID4 SINE ID 10 75 -8 1 1432 703 186 92 5 chr11 111084274 111084458 -10759398 - Lx LINE L1 0 6654 6455 1 1432 210 37 0 0 chr11 111084917 111084944 -10758912 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1432 516 16 0 0 chr11 111084944 111085004 -10758852 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1432 243 297 76 59 chr11 111087198 111087294 -10756562 + RMER15 LTR ERVL 1 98 -477 1 1432 543 276 11 99 chr11 111087294 111087475 -10756381 + RSINE1 SINE B4 1 165 0 1 1432 255 217 0 0 chr11 111087476 111087536 -10756320 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1432 344 164 0 168 chr11 111087536 111087631 -10756225 + HAL1-3A_ME LINE L1 1976 2054 -804 1 1432 547 341 69 25 chr11 111087667 111087944 -10755912 + RMER15 LTR ERVL 273 561 -14 1 1432 329 0 0 24 chr11 111088538 111088580 -10755276 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1432 739 245 75 123 chr11 111088712 111089085 -10754771 + ORR1E LTR MaLR 3 357 -2 1 1432 234 91 0 0 chr11 111089988 111090021 -10753835 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1432 539 291 104 0 chr11 111090110 111090244 -10753612 - RSINE1 SINE B4 -12 153 6 1 1432 224 369 19 46 chr11 111091269 111091377 -10752479 + MIRc SINE MIR 43 147 -121 1 1432 844 146 13 6 chr11 111091436 111091595 -10752261 + GA-rich Low_complexity Low_complexity 2 161 0 1 1432 201 74 0 0 chr11 111091634 111091661 -10752195 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1432 201 39 0 0 chr11 111091857 111091883 -10751973 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1432 904 82 35 12 chr11 111091993 111092165 -10751691 + (TC)n Simple_repeat Simple_repeat 1 176 0 1 1432 227 268 0 123 chr11 111093567 111093648 -10750208 - ORR1D1 LTR MaLR -18 356 286 1 1432 1194 200 0 9 chr11 111094603 111094825 -10749031 + URR1A DNA MER1_type 7 226 0 1 1432 335 205 51 13 chr11 111095200 111095279 -10748577 + ORR1D1 LTR MaLR 263 344 -30 1 1432 5367 23 1 0 chr11 111095358 111096007 -10747849 - L1Md_F3 LINE L1 -338 6246 5597 1 1432 2569 38 3 0 chr11 111096008 111096321 -10747535 + L1Md_F3 LINE L1 6257 6570 -14 1 1432 336 352 61 61 chr11 111097064 111097309 -10746547 - MLT1D LTR MaLR -1 504 260 1 1432 438 335 83 19 chr11 111097355 111097590 -10746266 - MLT1D LTR MaLR -369 258 20 1 1432 21 0 0 0 chr11 111097671 111097692 -10746164 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 751 264 30 20 chr11 111097778 111097975 -10745881 - B3 SINE B2 -17 199 1 1 1432 432 0 0 0 chr11 111098402 111098450 -10745406 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1432 1191 29 0 0 chr11 111099091 111099228 -10744628 + B1_Mus1 SINE Alu 3 139 -9 1 1432 207 0 0 0 chr11 111099228 111099251 -10744605 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1432 1684 211 212 5 chr11 111099524 111099963 -10743893 - MT2A LTR ERVL -3 530 1 1 1432 230 159 31 16 chr11 111100194 111100258 -10743598 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1432 599 332 71 33 chr11 111101173 111101413 -10742443 - B4A SINE B4 -30 262 14 1 1432 23 0 0 0 chr11 111101545 111101568 -10742288 + AT_rich Low_complexity Low_complexity 1 23 0 1 1432 486 0 0 0 chr11 111102269 111102323 -10741533 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1432 1131 297 68 31 chr11 111102710 111103061 -10740795 - ORR1D2 LTR MaLR -6 364 1 1 1432 483 171 0 0 chr11 111103138 111103243 -10740613 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1432 293 68 0 22 chr11 111103292 111103337 -10740519 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1 1432 1317 78 0 0 chr11 111103337 111103516 -10740340 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 1432 4375 210 31 14 chr11 111103519 111104417 -10739439 - Lx5 LINE L1 -3 7047 6135 1 1432 507 45 0 0 chr11 111104417 111104483 -10739373 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1432 1646 135 18 0 chr11 111104508 111104789 -10739067 + Lx5 LINE L1 5731 6016 -1034 1 1432 613 323 79 5 chr11 111104813 111105015 -10738841 - B4A SINE B4 -68 224 8 1 1432 270 0 0 0 chr11 111105492 111105522 -10738334 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1432 683 325 44 4 chr11 111105561 111105790 -10738066 - B4 SINE B4 -3 289 52 1 1432 428 350 15 20 chr11 111105928 111106126 -10737730 - B3A SINE B2 0 198 2 1 1432 22 0 0 0 chr11 111106157 111106179 -10737677 + AT_rich Low_complexity Low_complexity 1 22 0 1 1432 349 353 29 18 chr11 111106336 111106506 -10737350 + MER58A DNA MER1_type 45 216 -8 1 1432 4385 79 3 26 chr11 111106720 111107344 -10736512 - L1_Mus2 LINE L1 -1 6565 5956 1 1432 213 224 0 39 chr11 111108263 111108314 -10735542 - L2c LINE L2 -2 3385 3337 1 1432 377 226 10 41 chr11 111110312 111110409 -10733447 - RSINE1 SINE B4 -36 129 36 1 1432 310 316 17 17 chr11 111110790 111110906 -10732950 - MLT1E2 LTR MaLR -4 623 508 1 1432 273 353 61 67 chr11 111110920 111111248 -10732608 - MLT1E2 LTR MaLR -179 326 1 1 1432 196 365 15 38 chr11 111111249 111111380 -10732476 - MIR SINE MIR -26 236 109 1 1432 261 0 0 0 chr11 111112080 111112109 -10731747 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1432 243 0 0 0 chr11 111112323 111112350 -10731506 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1432 409 283 17 20 chr11 111113123 111113253 -10730603 - B1F1 SINE Alu -21 128 3 1 1432 450 0 0 0 chr11 111113381 111113431 -10730425 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1432 272 344 43 0 chr11 111113761 111113854 -10730002 + MLT1I LTR MaLR 43 139 -272 1 1432 396 0 0 0 chr11 111114958 111115002 -10728854 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1432 860 308 118 24 chr11 111115765 111116231 -10727625 + Lx8 LINE L1 6784 7293 -180 1 1432 252 0 0 0 chr11 111116283 111116311 -10727545 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1432 198 0 0 0 chr11 111116499 111116521 -10727335 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1432 2182 173 10 25 chr11 111118381 111118720 -10725136 - ORR1B1 LTR MaLR -3 391 51 1 1432 351 44 0 0 chr11 111118720 111118765 -10725091 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1432 2182 173 10 25 chr11 111118765 111118822 -10725034 - ORR1B1 LTR MaLR -344 50 1 1 1432 203 304 121 57 chr11 111120852 111121009 -10722847 - MER5A DNA MER1_type -18 171 5 1 1432 416 322 116 0 chr11 111122723 111122869 -10720987 - RSINE1 SINE B4 0 165 3 1 1432 387 244 60 15 chr11 111122942 111123075 -10720781 - MTD LTR MaLR -14 405 267 1 1432 242 291 41 41 chr11 111123145 111123267 -10720589 - L1MA9 LINE L1 -293 6019 5898 1 1432 390 290 83 97 chr11 111123618 111124053 -10719803 - Charlie1a DNA MER1_type -195 1260 832 1 1432 1393 268 34 45 chr11 111124237 111124854 -10719002 + L1_Rod LINE L1 1330 1939 -3908 1 1432 1050 279 103 14 chr11 111124879 111125297 -10718559 - Charlie1a DNA MER1_type -619 836 382 1 1432 466 240 0 22 chr11 111125367 111125550 -10718306 + GA-rich Low_complexity Low_complexity 2 180 0 1 1432 270 299 11 0 chr11 111125851 111125938 -10717918 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 1 1432 568 329 119 2 chr11 111125938 111126334 -10717522 - Lx9 LINE L1 -127 7517 7076 1 1432 447 68 0 0 chr11 111126585 111126644 -10717212 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1432 330 266 27 9 chr11 111127374 111127566 -10716290 + (TATATG)n Simple_repeat Simple_repeat 1 195 0 1 1432 207 0 0 0 chr11 111127688 111127711 -10716145 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1432 248 0 0 0 chr11 111128363 111128391 -10715465 - Lx2B LINE L1 -999 6001 5974 1 1432 393 152 13 0 chr11 111128391 111128470 -10715386 + Lx2B LINE L1 6916 6995 -5 1 1432 445 327 84 26 chr11 111128747 111128901 -10714955 + RSINE1 SINE B4 3 165 0 1 1432 273 75 0 0 chr11 111129017 111129057 -10714799 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1432 963 256 93 14 chr11 111129342 111129631 -10714225 + MTD LTR MaLR 104 415 -4 1 1432 414 0 0 0 chr11 111129642 111129688 -10714168 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1432 314 273 0 0 chr11 111129851 111129917 -10713939 - B4A SINE B4 -220 72 7 1 1432 1305 17 29 0 chr11 111130110 111130455 -10713401 + (TCTA)n Simple_repeat Simple_repeat 1 355 0 2 1432 888 181 0 0 chr11 111131381 111131552 -10712304 + (TA)n Simple_repeat Simple_repeat 1 171 0 2 1432 399 41 0 0 chr11 111131545 111131594 -10712262 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1432 543 233 143 12 chr11 111131950 111132111 -10711745 + B4A SINE B4 6 187 -105 2 1432 251 28 0 27 chr11 111132188 111132225 -10711631 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 1432 207 0 0 0 chr11 111132606 111132629 -10711227 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1432 3215 204 86 19 chr11 111133173 111133931 -10709925 - Lx5 LINE L1 -43 7007 6199 2 1432 1549 148 6 76 chr11 111133926 111134269 -10709587 + L1_Mur2 LINE L1 4311 4629 -1248 2 1432 1340 191 38 0 chr11 111134269 111134536 -10709320 + L1_Mur2 LINE L1 4893 5169 -708 2 1432 251 372 71 0 chr11 111134559 111134672 -10709184 + L2a LINE L2 3299 3419 -7 2 1432 213 39 0 0 chr11 111135905 111135931 -10707925 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1432 706 260 48 37 chr11 111135941 111136129 -10707727 - B3A SINE B2 -4 194 5 2 1432 1227 41 0 0 chr11 111136549 111136696 -10707160 + B1_Mus2 SINE Alu 1 147 0 2 1432 186 43 0 0 chr11 111136716 111136739 -10707117 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1432 21 0 0 0 chr11 111137322 111137343 -10706513 + AT_rich Low_complexity Low_complexity 1 21 0 2 1432 515 268 101 85 chr11 111138406 111138594 -10705262 - B3A SINE B2 -5 193 3 2 1432 4253 155 49 55 chr11 111139664 111140567 -10703289 - Lx4B LINE L1 -84 6974 6078 2 1432 233 296 127 0 chr11 111141142 111141213 -10702643 + ID4_ SINE ID 4 83 0 2 1432 419 286 112 71 chr11 111142559 111142755 -10701101 - B4A SINE B4 -85 207 4 2 1432 21 0 0 0 chr11 111143685 111143706 -10700150 + AT_rich Low_complexity Low_complexity 1 21 0 2 1432 417 321 56 21 chr11 111144138 111144281 -10699575 + B1F1 SINE Alu 1 148 -1 2 1432 1796 126 140 22 chr11 111144360 111144538 -10699318 + RMER17C LTR ERVK 1 211 -199 2 1432 528 45 0 0 chr11 111144538 111144605 -10699251 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1432 1796 126 140 22 chr11 111144605 111144790 -10699066 + RMER17C LTR ERVK 212 406 -4 2 1432 510 31 0 0 chr11 111145423 111145487 -10698369 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1432 870 231 87 3 chr11 111145650 111145937 -10697919 + Lx6 LINE L1 7083 7393 -67 2 1432 360 318 8 60 chr11 111145962 111146079 -10697777 + RLTR18 LTR ERVK 506 616 0 2 1432 564 173 0 16 chr11 111146110 111146292 -10697564 + CT-rich Low_complexity Low_complexity 2 180 0 2 1432 1691 148 128 74 chr11 111147063 111147429 -10696427 + ORR1B1 LTR MaLR 1 386 -8 2 1432 2520 115 103 0 chr11 111147892 111148301 -10695555 - Lx2 LINE L1 -9 6988 6538 2 1433 367 337 87 74 chr11 111149406 111149704 -10694152 - ORR1E LTR MaLR -34 325 24 2 1433 264 319 112 169 chr11 111149725 111150128 -10693728 + MLT1D LTR MaLR 74 453 -52 2 1433 707 258 28 32 chr11 111150509 111150725 -10693131 - B3 SINE B2 0 216 2 2 1433 378 0 0 0 chr11 111150839 111150881 -10692975 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1433 26 30 0 0 chr11 111150989 111151022 -10692834 + AT_rich Low_complexity Low_complexity 1 33 0 2 1433 402 115 0 0 chr11 111151022 111151083 -10692773 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1433 411 305 0 0 chr11 111151208 111151313 -10692543 - Lx9 LINE L1 -461 7183 7079 2 1433 296 300 0 0 chr11 111151482 111151552 -10692304 + ID4 SINE ID 6 75 -8 2 1433 928 197 45 65 chr11 111151758 111152095 -10691761 - Lx9 LINE L1 0 7644 7315 2 1433 598 279 33 14 chr11 111152091 111152302 -10691554 + Lx9 LINE L1 7115 7329 -315 2 1433 2326 113 27 3 chr11 111152304 111152642 -10691214 - ORR1A1 LTR MaLR 0 346 1 2 1433 272 48 24 0 chr11 111153024 111153066 -10690790 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1433 2774 183 163 24 chr11 111155218 111155557 -10688299 - RMER6D LTR ERVK 0 720 387 2 1433 186 43 0 0 chr11 111155557 111155580 -10688276 + (CCCCCT)n Simple_repeat Simple_repeat 4 26 0 2 1433 2774 183 163 24 chr11 111155580 111155872 -10687984 - RMER6D LTR ERVK -334 386 3 2 1433 316 148 0 0 chr11 111155984 111156038 -10687818 + RMER17A2 LTR ERVK 1 54 -852 2 1433 194 0 39 0 chr11 111156045 111156071 -10687785 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1433 273 25 25 0 chr11 111156073 111156113 -10687743 - B1_Mm SINE Alu 0 147 107 2 1433 790 122 8 43 chr11 111156085 111156244 -10687612 + RMER17A2 LTR ERVK 23 189 -717 2 1433 1848 174 62 35 chr11 111156239 111156613 -10687243 + RLTR26 LTR ERVK 259 642 0 2 1433 26 0 0 0 chr11 111156715 111156741 -10687115 + AT_rich Low_complexity Low_complexity 1 26 0 2 1433 1732 216 69 91 chr11 111156742 111157281 -10686575 + RMER1B Other Other 529 1055 -11 2 1433 240 333 0 106 chr11 111158073 111158167 -10685689 + RSINE1 SINE B4 3 86 -79 2 1433 870 216 81 27 chr11 111158092 111158249 -10685607 + B3 SINE B2 15 181 -35 2 1433 321 118 0 0 chr11 111158249 111158300 -10685556 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2 1433 870 216 81 27 chr11 111158300 111158328 -10685528 + B3 SINE B2 182 209 -7 2 1433 22 70 0 0 chr11 111158596 111158639 -10685217 + AT_rich Low_complexity Low_complexity 1 43 0 2 1433 216 86 0 0 chr11 111158720 111158755 -10685101 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1433 244 288 25 0 chr11 111159767 111159847 -10684009 + (TCTA)n Simple_repeat Simple_repeat 3 84 0 2 1433 753 300 14 5 chr11 111159847 111160065 -10683791 + MTD LTR MaLR 1 220 -199 2 1433 252 0 0 0 chr11 111161984 111162012 -10681844 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 2 1433 303 93 0 0 chr11 111162013 111162056 -10681800 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 2 1433 277 244 0 9 chr11 111162227 111162342 -10681514 + L1MA7 LINE L1 6152 6261 -39 2 1433 230 289 91 38 chr11 111163213 111163422 -10680434 - L1MC5 LINE L1 -471 7490 7271 2 1433 604 316 144 22 chr11 111163559 111163879 -10679977 + ORR1E LTR MaLR 1 359 0 2 1433 379 359 63 50 chr11 111163901 111164023 -10679833 - L1M5 LINE L1 -437 5736 5611 2 1433 3465 25 2 0 chr11 111164023 111164418 -10679438 + MTA_Mm LTR MaLR 1 396 0 2 1433 379 359 63 50 chr11 111164418 111164755 -10679101 - L1M5 LINE L1 -563 5610 5271 2 1433 540 304 66 47 chr11 111164778 111164989 -10678867 - B3 SINE B2 0 216 2 2 1433 197 0 71 0 chr11 111167339 111167367 -10676489 + (TCTCTG)n Simple_repeat Simple_repeat 1 30 0 2 1433 447 19 0 0 chr11 111167377 111167429 -10676427 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1433 257 337 10 20 chr11 111168613 111168713 -10675143 - ORR1E LTR MaLR -6 373 275 2 1433 355 371 47 29 chr11 111168802 111168974 -10674882 - ORR1E LTR MaLR -184 175 1 2 1433 1213 353 68 88 chr11 111168974 111169096 -10674760 - ORR1E-int LTR MaLR -53 1527 1414 2 1433 1123 66 0 0 chr11 111169096 111169232 -10674624 + B1_Mus2 SINE Alu 2 137 -10 2 1433 337 20 20 20 chr11 111169232 111169283 -10674573 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1433 1213 353 68 88 chr11 111169283 111169960 -10673896 - ORR1E-int LTR MaLR -167 1413 745 2 1433 232 337 12 0 chr11 111170400 111170483 -10673373 - ORR1E-int LTR MaLR -1134 446 363 2 1433 605 286 6 22 chr11 111170485 111170667 -10673189 + Lx7 LINE L1 7083 7261 -435 2 1433 281 308 27 14 chr11 111170685 111170833 -10673023 - Lx8 LINE L1 -318 7155 7006 2 1433 412 181 53 0 chr11 111170839 111170933 -10672923 + Lx7 LINE L1 7271 7369 -327 2 1433 335 277 29 44 chr11 111171049 111171185 -10672671 - ORR1E-int LTR MaLR -1211 369 236 2 1433 329 340 39 87 chr11 111171201 111171407 -10672449 - ORR1E LTR MaLR -122 237 42 2 1433 1044 46 0 0 chr11 111171905 111172035 -10671821 + (TC)n Simple_repeat Simple_repeat 1 130 0 2 1433 637 335 67 32 chr11 111172121 111172677 -10671179 - Lx8 LINE L1 -1 7472 6898 2 1433 354 340 28 0 chr11 111172894 111173038 -10670818 - MER5A1 DNA MER1_type -3 163 16 2 1433 252 0 0 0 chr11 111173480 111173508 -10670348 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1433 504 313 20 0 chr11 111174373 111174520 -10669336 + MER5B DNA MER1_type 1 150 -28 2 1433 191 209 93 0 chr11 111175742 111175785 -10668071 + MIRc SINE MIR 94 140 -128 2 1433 1290 110 21 7 chr11 111176338 111176626 -10667230 + (TCTA)n Simple_repeat Simple_repeat 1 292 0 2 1433 669 90 0 0 chr11 111177553 111177664 -10666192 + (TC)n Simple_repeat Simple_repeat 1 111 0 2 1433 207 114 0 0 chr11 111177664 111177698 -10666158 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1433 525 16 0 0 chr11 111179315 111179377 -10664479 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1433 339 25 0 0 chr11 111179723 111179763 -10664093 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2 1433 335 303 11 11 chr11 111179771 111179861 -10663995 - RSINE1 SINE B4 -70 95 6 2 1433 22 35 0 0 chr11 111179868 111179897 -10663959 + AT_rich Low_complexity Low_complexity 1 29 0 2 1433 746 268 131 54 chr11 111180585 111180950 -10662906 - MTD LTR MaLR 0 407 3 2 1433 219 69 0 0 chr11 111181036 111181065 -10662791 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1433 347 229 14 0 chr11 111181177 111181243 -10662613 + MTEb LTR MaLR 4 70 -309 2 1433 1064 298 38 33 chr11 111181243 111181611 -10662245 + ORR1D2 LTR MaLR 1 370 0 2 1433 793 307 89 14 chr11 111181611 111181900 -10661956 + MTEb LTR MaLR 69 379 0 2 1433 639 281 72 10 chr11 111182164 111182358 -10661498 - B3 SINE B2 -10 206 1 2 1433 327 203 0 0 chr11 111182370 111182444 -10661412 + CT-rich Low_complexity Low_complexity 1 74 0 2 1433 240 111 0 0 chr11 111182497 111182533 -10661323 + (CAT)n Simple_repeat Simple_repeat 2 37 0 2 1433 22 35 0 0 chr11 111183313 111183342 -10660514 + AT_rich Low_complexity Low_complexity 1 29 0 2 1433 397 350 0 16 chr11 111183466 111183588 -10660268 - PB1D7 SINE Alu 0 120 1 2 1433 234 0 0 0 chr11 111184417 111184443 -10659413 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1433 360 0 0 0 chr11 111184443 111184482 -10659374 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1433 520 242 75 68 chr11 111184725 111184858 -10658998 + RSINE1 SINE B4 4 137 -28 2 1433 198 0 0 0 chr11 111184950 111184972 -10658884 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1433 201 272 67 12 chr11 111185214 111185315 -10658541 + MIRb SINE MIR 77 184 -84 2 1433 351 297 92 46 chr11 111185319 111185471 -10658385 + ORR1C1 LTR MaLR 5 163 -215 2 1433 321 301 19 10 chr11 111185515 111185619 -10658237 - RMER10B LTR ERVL -23 375 271 2 1433 504 284 104 70 chr11 111185898 111186099 -10657757 - MTEa LTR MaLR -164 215 8 2 1433 241 229 68 41 chr11 111186127 111186200 -10657656 - tRNA-Cys-TGY tRNA tRNA 0 75 1 3 1433 365 179 12 0 chr11 111187677 111187761 -10656095 + CT-rich Low_complexity Low_complexity 3 87 0 3 1433 401 180 20 20 chr11 111187963 111188065 -10655791 - Lx6 LINE L1 -19 7441 7340 3 1433 591 234 0 0 chr11 111190147 111190258 -10653598 + B1_Mur2 SINE Alu 36 146 -3 3 1433 923 290 0 14 chr11 111190495 111190525 -10653331 - B3 SINE B2 -2 214 187 3 1433 2808 183 7 53 chr11 111190525 111191108 -10652748 - RLTR31B_Mm LTR ERVK -1 556 1 3 1433 923 290 0 14 chr11 111191108 111191294 -10652562 - B3 SINE B2 -30 186 1 3 1433 396 286 18 71 chr11 111191971 111192084 -10651772 + ID_B1 SINE B4 108 214 -10 3 1433 453 36 0 0 chr11 111192090 111192145 -10651711 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1433 498 17 0 0 chr11 111192307 111192366 -10651490 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1433 21 0 0 0 chr11 111192505 111192526 -10651330 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 1770 164 67 3 chr11 111193734 111194077 -10649779 + Lx2 LINE L1 6631 6995 -2 3 1433 334 315 71 22 chr11 111194508 111194690 -10649166 + Lx8 LINE L1 7205 7395 -78 3 1433 1881 164 3 0 chr11 111194723 111195064 -10648792 - L1_Mur2 LINE L1 -605 5272 4931 3 1433 425 172 0 20 chr11 111195073 111195174 -10648682 + Lx2B LINE L1 6902 7000 0 3 1433 533 320 36 101 chr11 111195578 111195797 -10648059 + B3 SINE B2 2 206 -10 3 1433 567 0 0 0 chr11 111195903 111195966 -10647890 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1433 665 335 22 13 chr11 111196052 111196282 -10647574 - B4A SINE B4 -55 237 6 3 1433 237 240 214 46 chr11 111196449 111196580 -10647276 + L3 LINE CR1 2349 2501 -1988 3 1433 213 132 0 0 chr11 111196863 111196901 -10646955 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1433 425 345 14 0 chr11 111197380 111197525 -10646331 - RSINE1 SINE B4 -14 151 5 3 1433 183 129 0 0 chr11 111198147 111198178 -10645678 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1433 510 17 0 0 chr11 111198678 111198737 -10645119 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1433 644 299 40 15 chr11 111198846 111199046 -10644810 - B4 SINE B4 -80 212 8 3 1433 549 44 0 0 chr11 111199397 111199465 -10644391 + (TTA)n Simple_repeat Simple_repeat 2 69 0 3 1433 1773 179 114 3 chr11 111199771 111200130 -10643726 + MTC LTR MaLR 15 413 -8 3 1433 558 228 103 46 chr11 111200791 111200966 -10642890 - RMER15 LTR ERVL -3 572 388 3 1433 247 318 131 36 chr11 111201786 111201923 -10641933 - ORR1E LTR MaLR -204 155 6 3 1433 331 220 0 0 chr11 111203238 111203297 -10640559 - Lx9 LINE L1 -394 7250 7192 3 1433 207 0 0 0 chr11 111203428 111203451 -10640405 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1433 414 0 0 0 chr11 111204039 111204085 -10639771 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1433 240 323 0 0 chr11 111205128 111205193 -10638663 + B4 SINE B4 82 146 -146 3 1433 425 301 0 34 chr11 111205136 111205253 -10638603 + PB1D10 SINE Alu 5 117 0 3 1433 303 288 92 40 chr11 111205345 111205497 -10638359 + HAL1-3A_ME LINE L1 2284 2443 -415 3 1433 411 307 11 43 chr11 111205500 111205684 -10638172 + GA-rich Low_complexity Low_complexity 3 180 0 3 1433 200 229 49 0 chr11 111205907 111205968 -10637888 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 3 1433 291 54 0 0 chr11 111206361 111206398 -10637458 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1433 1809 178 142 7 chr11 111207278 111207702 -10636154 - Lx2B LINE L1 -600 6400 5920 3 1433 3041 167 45 36 chr11 111207702 111208285 -10635571 + Lx2B LINE L1 6403 6990 -10 3 1433 593 330 99 6 chr11 111208628 111208942 -10634914 + Lx6 LINE L1 6081 6423 -1037 3 1433 1517 139 88 175 chr11 111208956 111209374 -10634482 + RLTR41 LTR ERV1 2 383 -63 3 1433 342 0 0 0 chr11 111209431 111209469 -10634387 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1433 243 0 0 0 chr11 111209495 111209522 -10634334 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1433 5018 118 140 6 chr11 111210037 111210882 -10632974 + RMER17B LTR ERVK 1 958 0 3 1433 233 286 76 76 chr11 111210988 111211132 -10632724 + B1_Mur4 SINE Alu 6 149 -1 3 1433 291 369 19 63 chr11 111211758 111211917 -10631939 - B3A SINE B2 0 198 47 3 1433 5763 192 71 7 chr11 111212111 111213492 -10630364 + Lx4B LINE L1 5537 7016 -42 3 1433 249 33 0 0 chr11 111213497 111213527 -10630329 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1433 833 123 7 0 chr11 111214027 111214165 -10629691 + (TAGA)n Simple_repeat Simple_repeat 1 139 0 3 1433 414 0 0 0 chr11 111214398 111214444 -10629412 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1433 276 257 29 0 chr11 111214718 111214788 -10629068 + B3A SINE B2 1 72 -126 3 1433 3683 44 5 0 chr11 111214788 111215222 -10628634 - RLTR10C LTR ERVK 0 436 1 3 1433 7744 32 0 1 chr11 111215222 111216159 -10627697 - MMERVK10C-int LTR ERVK 0 7581 6646 3 1433 39626 41 2 1 chr11 111216145 111221081 -10622775 - MMERVK10C-int LTR ERVK -1771 5810 870 3 1433 2290 103 56 3 chr11 111221079 111221439 -10622417 - MMERVK10C-int LTR ERVK -7182 399 21 3 1433 399 276 0 70 chr11 111221439 111221459 -10622397 + B3A SINE B2 54 68 -130 3 1433 3706 37 5 5 chr11 111221459 111221895 -10621961 - RLTR10C LTR ERVK 0 436 1 3 1433 399 276 0 70 chr11 111221895 111222030 -10621826 + B3A SINE B2 69 198 0 3 1433 596 323 18 44 chr11 111222078 111222365 -10621491 + L1MD LINE L1 5305 5594 -2401 3 1433 6017 81 12 7 chr11 111222365 111223187 -10620669 + L1_Mus2 LINE L1 5741 6566 0 3 1433 596 323 18 44 chr11 111223187 111223242 -10620614 + L1MD LINE L1 5595 5638 -2357 3 1433 947 40 8 0 chr11 111223263 111223387 -10620469 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 3 1433 441 0 0 0 chr11 111223503 111223552 -10620304 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1433 432 303 40 0 chr11 111223554 111223706 -10620150 - ID_B1 SINE B4 -42 182 25 3 1433 447 241 231 44 chr11 111223756 111223938 -10619918 - URR1B DNA MER1_type 0 225 10 3 1433 618 250 15 0 chr11 111225302 111225438 -10618418 + B1_Mur2 SINE Alu 3 140 -9 3 1433 183 80 0 0 chr11 111225439 111225464 -10618392 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3 1433 34619 84 5 10 chr11 111225517 111231694 -10612162 - L1Md_F2 LINE L1 -9 6573 446 3 1433 331 328 33 16 chr11 111231860 111231981 -10611875 - ORR1E LTR MaLR -214 145 23 3 1433 1049 224 11 49 chr11 111231991 111232277 -10611579 + Lx9 LINE L1 6807 7081 -563 3 1433 1788 170 46 26 chr11 111232467 111232812 -10611044 + MTC LTR MaLR 56 407 -14 3 1433 183 42 0 0 chr11 111233052 111233076 -10610780 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 3 1433 435 38 0 0 chr11 111235201 111235254 -10608602 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1433 1006 269 31 56 chr11 111235827 111236114 -10607742 - B4 SINE B4 -5 287 8 3 1433 596 335 0 6 chr11 111236320 111236494 -10607362 + B3A SINE B2 2 174 -24 3 1433 376 362 56 6 chr11 111237642 111237803 -10606053 + B3 SINE B2 4 172 -44 3 1433 666 301 91 94 chr11 111239899 111240262 -10603594 + MTD LTR MaLR 16 405 -14 3 1433 477 360 108 14 chr11 111240473 111240752 -10603104 + MLT1A0 LTR MaLR 3 307 -58 3 1433 729 279 74 30 chr11 111241458 111241661 -10602195 + B4A SINE B4 9 220 -72 3 1433 185 35 69 0 chr11 111241666 111241695 -10602161 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 3 1433 780 65 0 0 chr11 111241971 111242078 -10601778 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 1433 183 42 0 0 chr11 111242450 111242474 -10601382 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 1433 697 295 143 27 chr11 111243077 111243638 -10600218 + L1MA8 LINE L1 5576 6201 -90 3 1433 780 142 289 34 chr11 111243648 111243852 -10600004 - RMER4B LTR ERVK -11 574 319 3 1433 411 20 0 0 chr11 111243852 111243897 -10599959 + (TTC)n Simple_repeat Simple_repeat 2 46 0 3 1433 1098 125 0 0 chr11 111243897 111244073 -10599783 + (TCC)n Simple_repeat Simple_repeat 3 178 0 3 1433 1559 181 12 25 chr11 111244089 111244112 -10599744 - RMER4B LTR ERVK -245 340 318 3 1433 811 75 8 8 chr11 111244112 111244233 -10599623 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 3 1433 1559 181 12 25 chr11 111244233 111244532 -10599324 - RMER4B LTR ERVK -268 317 22 3 1433 255 309 19 9 chr11 111244620 111244728 -10599128 + GA-rich Low_complexity Low_complexity 2 110 0 3 1433 4916 36 33 3 chr11 111244999 111245606 -10598250 - L1Md_F3 LINE L1 -17 6567 5943 3 1433 3779 178 53 40 chr11 111246033 111246483 -10597373 + Lx2B LINE L1 6184 6622 -378 3 1433 1059 110 0 0 chr11 111246483 111246629 -10597227 + B1_Mm SINE Alu 2 147 0 3 1433 3779 178 53 40 chr11 111246629 111246984 -10596872 + Lx2B LINE L1 6623 7000 0 3 1433 229 258 28 83 chr11 111247407 111247479 -10596377 + B1F2 SINE Alu 32 99 -50 3 1433 188 67 0 32 chr11 111247486 111247517 -10596339 + (TAA)n Simple_repeat Simple_repeat 2 31 0 3 1433 21 36 0 0 chr11 111247651 111247679 -10596177 + AT_rich Low_complexity Low_complexity 1 28 0 3 1433 328 231 23 40 chr11 111248161 111248337 -10595519 + (TATAA)n Simple_repeat Simple_repeat 4 176 0 3 1433 26 74 0 0 chr11 111248419 111248473 -10595383 + AT_rich Low_complexity Low_complexity 1 54 0 3 1433 243 0 0 0 chr11 111248642 111248669 -10595187 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1433 286 293 68 99 chr11 111249422 111249730 -10594126 + L1M5 LINE L1 5470 5769 -410 3 1433 342 0 0 0 chr11 111249798 111249836 -10594020 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1433 244 216 40 0 chr11 111249994 111250068 -10593788 + L1_Mus3 LINE L1 6548 6624 -14 3 1433 205 137 38 38 chr11 111250413 111250466 -10593390 + T-rich Low_complexity Low_complexity 1 53 0 3 1433 211 72 23 23 chr11 111250480 111250523 -10593333 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1433 246 316 55 39 chr11 111251227 111251408 -10592448 + L1MA9 LINE L1 5595 5778 -534 3 1433 399 252 10 0 chr11 111251475 111251574 -10592282 + Lx9 LINE L1 7350 7449 -195 3 1433 279 0 0 0 chr11 111251606 111251637 -10592219 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1433 294 311 104 39 chr11 111251748 111251979 -10591877 + L1MA9 LINE L1 5845 6090 -222 3 1433 278 132 19 0 chr11 111252117 111252170 -10591686 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 1433 222 37 0 0 chr11 111252217 111252244 -10591612 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1433 321 26 0 0 chr11 111252631 111252669 -10591187 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3 1433 359 349 117 43 chr11 111253807 111254226 -10589630 + Lx8 LINE L1 6878 7327 -146 4 1433 217 273 42 83 chr11 111254464 111254560 -10589296 - PB1 SINE Alu 0 127 36 4 1433 219 296 85 12 chr11 111254535 111254617 -10589239 - ID_B1 SINE B4 -100 124 37 4 1433 421 337 0 35 chr11 111255122 111255291 -10588565 + RSINE1 SINE B4 3 165 0 4 1433 863 178 0 6 chr11 111255292 111255467 -10588389 + (TA)n Simple_repeat Simple_repeat 2 175 0 4 1433 527 329 0 24 chr11 111256238 111256406 -10587450 + RSINE1 SINE B4 2 165 0 4 1433 5105 96 13 0 chr11 111257025 111257731 -10586125 - Lx3_Mus LINE L1 -8 7001 6287 4 1433 6178 71 49 34 chr11 111257731 111258675 -10585181 + L1_Mur1 LINE L1 4311 5268 -618 4 1433 1121 277 124 51 chr11 111258838 111258965 -10584891 + Lx6 LINE L1 7000 7132 -328 4 1433 1651 237 67 37 chr11 111258965 111259474 -10584382 + RLTR11A2 LTR ERVK 2 525 -2 4 1433 1121 277 124 51 chr11 111259474 111259757 -10584099 + Lx6 LINE L1 7133 7440 -20 4 1433 23 68 0 0 chr11 111259935 111259979 -10583877 + AT_rich Low_complexity Low_complexity 1 44 0 4 1433 394 294 10 10 chr11 111260163 111260266 -10583590 + B4A SINE B4 2 104 -188 4 1433 351 78 0 0 chr11 111260406 111260457 -10583399 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1433 1134 309 31 46 chr11 111260609 111261187 -10582669 + Lx9 LINE L1 6749 7372 -272 4 1433 363 23 0 0 chr11 111261187 111261231 -10582625 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1433 1106 339 45 48 chr11 111261231 111261368 -10582488 + Lx9 LINE L1 7332 7462 -11 4 1433 686 307 17 0 chr11 111262330 111262509 -10581347 - B3 SINE B2 -34 182 1 4 1433 5660 128 36 12 chr11 111262893 111263828 -10580028 + RMER17B LTR ERVK 1 958 0 4 1433 276 312 96 26 chr11 111265165 111265280 -10578576 - PB1 SINE Alu -2 125 3 4 1433 24 67 0 0 chr11 111265314 111265359 -10578497 + AT_rich Low_complexity Low_complexity 1 45 0 4 1433 3143 162 54 3 chr11 111265524 111266117 -10577739 - Lx5 LINE L1 -840 6210 5588 4 1433 4059 180 56 21 chr11 111266123 111267032 -10576824 + L1_Mur2 LINE L1 2178 3118 -2759 4 1433 411 21 0 0 chr11 111268799 111268847 -10575009 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1433 455 280 66 18 chr11 111268847 111269014 -10574842 + Lx7 LINE L1 6820 6994 -702 4 1433 213 233 62 19 chr11 111269055 111269217 -10574639 + (TA)n Simple_repeat Simple_repeat 1 169 0 4 1433 720 252 91 95 chr11 111269236 111269630 -10574226 - MT2A LTR ERVL -47 554 48 4 1433 3969 158 69 3 chr11 111269632 111270436 -10573420 - Lx5 LINE L1 -1123 5927 5069 4 1433 396 0 0 0 chr11 111271764 111271808 -10572048 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1433 325 268 21 38 chr11 111272214 111272349 -10571507 + MLT1A1 LTR MaLR 225 408 0 4 1433 4980 129 58 14 chr11 111273194 111273309 -10570547 - Lx2B LINE L1 -1 6999 6884 4 1433 202 0 0 83 chr11 111273309 111273345 -10570511 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 4 1433 4980 129 58 14 chr11 111273345 111274078 -10569778 - Lx2B LINE L1 -117 6883 6116 4 1433 252 356 98 16 chr11 111275051 111275245 -10568611 + MIR SINE MIR 51 260 -2 4 1433 249 197 0 0 chr11 111275282 111275353 -10568503 + GA-rich Low_complexity Low_complexity 2 72 0 4 1433 21 0 0 0 chr11 111275906 111275927 -10567929 + AT_rich Low_complexity Low_complexity 1 21 0 4 1433 277 392 10 10 chr11 111276198 111276301 -10567555 + MLT1F LTR MaLR 157 259 -289 4 1433 180 0 0 0 chr11 111276618 111276638 -10567218 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1433 1208 55 0 0 chr11 111277266 111277411 -10566445 + B1_Mm SINE Alu 3 147 0 4 1433 290 49 66 0 chr11 111277411 111277472 -10566384 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 4 1433 452 190 0 25 chr11 111277810 111277891 -10565965 + ID4_ SINE ID 5 83 0 4 1433 729 108 39 0 chr11 111278226 111278439 -10565417 + (TCTA)n Simple_repeat Simple_repeat 1 221 0 4 1433 186 118 0 0 chr11 111278442 111278476 -10565380 + (CAT)n Simple_repeat Simple_repeat 3 36 0 4 1433 225 0 0 0 chr11 111278895 111278920 -10564936 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1433 396 0 0 0 chr11 111278920 111278963 -10564893 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 179 7101 76 10 10 chr11 111279805 111281083 -10562773 - L1_Mus2 LINE L1 0 6566 5292 4 1434 3649 35 2 0 chr11 111281083 111281514 -10562342 - L1Md_T LINE L1 0 6582 6151 4 1434 4559 121 2 13 chr11 111281514 111281637 -10562219 - L1_Mus2 LINE L1 -592 5291 5182 4 1434 21 0 0 0 chr11 111281811 111281832 -10562024 + AT_rich Low_complexity Low_complexity 1 21 0 4 1434 815 274 174 34 chr11 111283595 111283916 -10559940 - MTD LTR MaLR -9 410 45 4 1434 21 0 0 0 chr11 111285112 111285133 -10558723 + AT_rich Low_complexity Low_complexity 1 21 0 4 1434 241 303 21 63 chr11 111285759 111285854 -10558002 - Lx8 LINE L1 -220 7253 7163 4 1434 30 27 0 0 chr11 111286601 111286638 -10557218 + AT_rich Low_complexity Low_complexity 1 37 0 4 1434 697 259 34 11 chr11 111286682 111286858 -10556998 - B3A SINE B2 -17 181 2 4 1434 291 330 0 11 chr11 111287037 111287126 -10556730 - B4A SINE B4 -78 214 127 4 1434 651 295 65 29 chr11 111287340 111287616 -10556240 + B4 SINE B4 2 287 -5 4 1434 1245 157 11 217 chr11 111289460 111289654 -10554202 + RMER17C LTR ERVK 1 179 -231 4 1434 864 55 0 0 chr11 111289654 111289764 -10554092 + (TCTCC)n Simple_repeat Simple_repeat 1 110 0 4 1434 1245 157 11 217 chr11 111289764 111290025 -10553831 + RMER17C LTR ERVK 180 362 -48 4 1434 494 321 53 24 chr11 111290048 111290217 -10553639 + B4 SINE B4 107 280 -12 4 1434 785 323 49 7 chr11 111290220 111290677 -10553179 - Lx8 LINE L1 -507 7189 6708 4 1434 522 289 49 10 chr11 111290674 111290877 -10552979 + Lx8 LINE L1 5701 5911 -1562 4 1434 450 0 0 0 chr11 111291003 111291053 -10552803 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1434 615 303 94 22 chr11 111291054 111291321 -10552535 + Lx8 LINE L1 6437 6722 -751 4 1434 343 98 33 0 chr11 111291577 111291638 -10552218 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1434 387 0 0 0 chr11 111291839 111291882 -10551974 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1434 810 82 55 0 chr11 111291884 111291994 -10551862 - B1_Mus1 SINE Alu -6 142 27 4 1434 1604 156 93 0 chr11 111292118 111292388 -10551468 - ORR1B2 LTR MaLR -68 299 5 4 1434 3359 190 61 10 chr11 111292404 111293112 -10550744 - ORR1B2-int LTR MaLR -45 1464 721 4 1434 386 239 54 0 chr11 111293079 111293171 -10550685 - B1_Mus2 SINE Alu -37 110 14 4 1434 1346 191 3 7 chr11 111293178 111293473 -10550383 - L1_Mur2 LINE L1 -616 5261 4968 4 1434 6956 170 35 9 chr11 111293474 111294933 -10548923 + Lx5 LINE L1 5462 6976 -74 4 1434 229 118 145 14 chr11 111295643 111295712 -10548144 + (ATGGTG)n Simple_repeat Simple_repeat 4 81 0 4 1434 251 275 29 0 chr11 111296490 111296559 -10547297 + PB1D10 SINE Alu 33 103 -14 4 1434 607 313 45 0 chr11 111296623 111296824 -10547032 + B3 SINE B2 7 216 0 4 1434 614 357 43 74 chr11 111296863 111297162 -10546694 + B4A SINE B4 1 290 -2 4 1434 867 354 87 81 chr11 111297157 111298298 -10545558 - MLT1-int LTR MaLR -246 1243 21 4 1434 315 0 0 0 chr11 111298573 111298608 -10545248 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1434 797 120 120 0 chr11 111298663 111298788 -10545068 + B1_Mus1 SINE Alu 1 140 -8 4 1434 531 0 0 0 chr11 111298788 111298847 -10545009 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1434 26 30 0 0 chr11 111299141 111299174 -10544682 + AT_rich Low_complexity Low_complexity 1 33 0 4 1434 2650 269 50 24 chr11 111299358 111300179 -10543677 + Lx9 LINE L1 6341 7182 -462 4 1434 354 270 10 39 chr11 111300270 111300374 -10543482 + ORR1D2 LTR MaLR 270 370 0 4 1434 290 265 104 83 chr11 111300627 111300771 -10543085 + B4A SINE B4 102 248 -44 4 1434 579 29 0 0 chr11 111302298 111302367 -10541489 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 4 1434 372 94 0 0 chr11 111303598 111303651 -10540205 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1434 440 62 0 15 chr11 111304325 111304390 -10539466 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1434 342 0 0 0 chr11 111304662 111304700 -10539156 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1434 793 298 78 16 chr11 111305280 111305536 -10538320 + B4A SINE B4 3 274 -18 4 1434 257 164 30 0 chr11 111305915 111305982 -10537874 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 4 1434 529 240 0 10 chr11 111306153 111306254 -10537602 - B3A SINE B2 -98 100 1 4 1434 227 336 36 71 chr11 111306255 111306367 -10537489 - MIRc SINE MIR -135 133 26 4 1434 1728 226 45 11 chr11 111307967 111308342 -10535514 - MTD LTR MaLR -14 405 18 4 1434 1978 269 53 105 chr11 111308361 111309151 -10534705 - MTD-int LTR MaLR -2 1256 508 4 1434 503 69 14 0 chr11 111309151 111309223 -10534633 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1434 444 211 0 0 chr11 111309237 111309332 -10534524 - RMER1C Other Other -18 1324 1230 4 1434 369 62 0 0 chr11 111309341 111309389 -10534467 + (GGA)n Simple_repeat Simple_repeat 3 50 0 4 1434 259 242 0 0 chr11 111309389 111309455 -10534401 - RMER1C Other Other -124 1218 1153 4 1434 318 257 1 124 chr11 111309549 111309682 -10534174 + RMER1C Other Other 399 588 -754 4 1434 432 299 177 0 chr11 111310454 111310618 -10533238 - B3 SINE B2 -23 193 1 4 1434 1147 155 84 0 chr11 111310708 111310921 -10532935 - Lx2B LINE L1 -362 6638 6408 4 1434 22 0 0 0 chr11 111311190 111311212 -10532644 + AT_rich Low_complexity Low_complexity 1 22 0 4 1434 537 55 0 0 chr11 111313911 111313984 -10529872 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1434 573 342 15 60 chr11 111314071 111314270 -10529586 - B4 SINE B4 -3 289 100 4 1434 837 118 35 0 chr11 111314274 111314443 -10529413 + CT-rich Low_complexity Low_complexity 2 176 0 4 1434 206 133 0 0 chr11 111314443 111314473 -10529383 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 4 1434 36082 16 1 8 chr11 111314652 111319865 -10523991 + L1Md_A LINE L1 416 5586 -297 4 1434 8344 39 0 0 chr11 111319865 111320861 -10522995 + L1Md_A LINE L1 5587 6582 0 4 1434 1235 106 16 16 chr11 111320917 111321108 -10522748 + B2_Mm2 SINE B2 1 191 -4 4 1434 362 219 9 0 chr11 111322181 111322286 -10521570 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1434 23 0 0 0 chr11 111322850 111322873 -10520983 + AT_rich Low_complexity Low_complexity 1 23 0 5 1434 330 340 76 36 chr11 111322915 111323138 -10520718 - HAL1-3A_ME LINE L1 -652 2206 1975 5 1434 417 86 0 0 chr11 111323140 111323198 -10520658 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1434 845 320 13 47 chr11 111323577 111323878 -10519978 + B4A SINE B4 1 291 -1 5 1434 489 34 0 0 chr11 111324013 111324072 -10519784 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1434 389 193 188 0 chr11 111325036 111325212 -10518644 - Lx9 LINE L1 -11 7633 7425 5 1434 452 170 75 0 chr11 111325294 111325400 -10518456 - Lx9 LINE L1 -217 7427 7314 5 1434 1830 158 16 41 chr11 111325400 111325742 -10518114 + ORR1A4 LTR MaLR 2 321 -8 5 1434 870 249 39 4 chr11 111325746 111325976 -10517880 - Lx9 LINE L1 -337 7307 7070 5 1434 539 190 0 123 chr11 111325962 111326124 -10517732 + Lx9 LINE L1 6943 7084 -560 5 1434 803 153 29 6 chr11 111326203 111326374 -10517482 - Lx2A1 LINE L1 -6 7002 6828 5 1434 532 309 71 91 chr11 111326462 111326672 -10517184 - B3 SINE B2 -10 206 1 5 1434 1295 69 0 0 chr11 111326853 111327026 -10516830 - L1_Mus2 LINE L1 0 6566 6394 5 1434 825 230 26 10 chr11 111328035 111328228 -10515628 + B3 SINE B2 21 216 0 5 1434 8041 35 0 2 chr11 111328269 111329298 -10514558 - L1Md_F2 LINE L1 -7 6575 5549 5 1434 255 345 109 0 chr11 111329791 111329821 -10514035 + B1F1 SINE Alu 6 137 -12 5 1434 304 292 79 0 chr11 111329821 111329910 -10513946 + ID_B1 SINE B4 117 212 -12 5 1434 441 103 0 0 chr11 111329912 111329980 -10513876 + (CGAAA)n Simple_repeat Simple_repeat 3 70 0 5 1434 691 269 34 6 chr11 111330002 111330178 -10513678 + B3A SINE B2 1 181 -17 5 1434 226 306 79 21 chr11 111330449 111330639 -10513217 - L1M2 LINE L1 -496 5795 5595 5 1434 374 174 0 0 chr11 111330671 111330740 -10513116 - Lx6 LINE L1 -14 7446 7378 5 1434 1395 289 54 47 chr11 111330740 111331256 -10512600 + Lx6 LINE L1 6806 7325 -135 5 1434 4060 138 11 6 chr11 111331257 111331912 -10511944 + Lx3B LINE L1 6309 6966 -7 5 1434 1522 0 9 0 chr11 111331923 111332134 -10511722 + (GAA)n Simple_repeat Simple_repeat 1 212 0 5 1434 935 269 5 0 chr11 111332149 111332346 -10511510 - B3 SINE B2 -13 203 6 5 1434 22 35 0 0 chr11 111332516 111332545 -10511311 + AT_rich Low_complexity Low_complexity 1 29 0 5 1434 1388 176 46 30 chr11 111332659 111332987 -10510869 + L1_Mur2 LINE L1 4604 4936 -941 5 1434 1174 286 79 16 chr11 111332992 111333496 -10510360 - Lx8 LINE L1 -132 7341 6806 5 1434 1166 69 0 0 chr11 111333664 111333809 -10510047 - B1_Mus1 SINE Alu -2 146 2 5 1434 237 145 32 16 chr11 111334493 111334556 -10509300 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1434 352 276 31 0 chr11 111334842 111334939 -10508917 + PB1D7 SINE Alu 8 107 -13 5 1434 478 77 15 0 chr11 111336017 111336082 -10507774 + (TCC)n Simple_repeat Simple_repeat 1 66 0 5 1434 719 100 9 0 chr11 111336085 111336195 -10507661 + (TC)n Simple_repeat Simple_repeat 1 111 0 5 1434 238 320 32 24 chr11 111336391 111336516 -10507340 + BC1_Mm scRNA scRNA 9 134 -18 5 1434 1727 253 25 2 chr11 111336651 111337051 -10506805 - Lx5 LINE L1 -115 6935 6527 5 1434 3115 210 53 13 chr11 111337060 111338135 -10505721 - Lx5 LINE L1 -631 6419 5301 5 1434 877 188 11 84 chr11 111338143 111338283 -10505573 + L1_Mur2 LINE L1 1914 2050 -3827 5 1434 504 86 0 0 chr11 111338283 111338353 -10505503 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1434 877 188 11 84 chr11 111338353 111338485 -10505371 + L1_Mur2 LINE L1 2051 2166 -3711 5 1434 371 370 40 20 chr11 111339128 111339277 -10504579 + B3A SINE B2 1 152 -46 5 1434 276 149 0 0 chr11 111339878 111339925 -10503931 + (TCC)n Simple_repeat Simple_repeat 3 49 0 5 1434 725 312 87 28 chr11 111340256 111340648 -10503208 + MTD LTR MaLR 5 419 0 5 1434 485 264 29 23 chr11 111340649 111340820 -10503036 + MTD-int LTR MaLR 2 173 -1085 5 1434 194 377 29 0 chr11 111341358 111341427 -10502429 + L2b LINE L2 3242 3312 -63 5 1434 1194 227 132 6 chr11 111341793 111342125 -10501731 - ORR1D1 LTR MaLR 0 374 1 5 1434 882 248 67 99 chr11 111342384 111342814 -10501042 + MT2A LTR ERVL 5 554 -47 5 1434 709 180 6 6 chr11 111342824 111342992 -10500864 + (TA)n Simple_repeat Simple_repeat 1 168 0 5 1434 278 340 43 114 chr11 111343059 111343384 -10500472 - LTR40c LTR ERVL -92 373 72 5 1434 1360 195 39 0 chr11 111343517 111343825 -10500031 - L1_Mur2 LINE L1 -729 5148 4829 5 1434 381 344 39 19 chr11 111343825 111343979 -10499877 + Tigger5 DNA MER2_type 24 180 -2226 5 1434 616 247 154 0 chr11 111344637 111344819 -10499037 + B3 SINE B2 2 211 -5 5 1434 261 0 0 0 chr11 111345448 111345477 -10498379 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1434 513 0 0 0 chr11 111345477 111345533 -10498323 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1434 3327 112 86 27 chr11 111345761 111346318 -10497538 - Lx LINE L1 -6 6648 6059 5 1434 240 290 105 15 chr11 111346713 111346846 -10497010 - L1ME3A LINE L1 -119 6054 5910 5 1434 324 333 196 26 chr11 111346934 111347316 -10496540 - L1ME3A LINE L1 -355 5818 5372 5 1434 13041 167 28 14 chr11 111347833 111350678 -10493178 - Lx5 LINE L1 -943 6107 3205 5 1434 811 278 14 0 chr11 111351320 111351529 -10492327 - B3 SINE B2 0 216 5 5 1434 360 0 0 0 chr11 111351985 111352025 -10491831 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1434 2652 56 41 1 chr11 111352116 111352469 -10491387 + MT2C_Mm LTR ERVL 1 494 -107 5 1434 256 29 0 0 chr11 111352455 111352489 -10491367 - ORR1A1-int LTR MaLR -1475 34 1 5 1434 2573 51 18 0 chr11 111352493 111352825 -10491031 - ORR1A1 LTR MaLR -8 338 1 5 1434 279 312 16 12 chr11 111353692 111353740 -10490116 + ID SINE ID 39 81 -143 5 1434 274 273 47 0 chr11 111353740 111353829 -10490027 + B1F2 SINE Alu 1 98 -52 5 1434 259 304 204 26 chr11 111354620 111354850 -10489006 - B4A SINE B4 -17 275 5 5 1434 266 268 68 27 chr11 111356350 111356423 -10487433 + B4 SINE B4 2 77 -215 5 1434 747 267 10 25 chr11 111356444 111356640 -10487216 + MTD LTR MaLR 18 210 -209 5 1434 782 291 9 27 chr11 111356641 111356860 -10486996 + B3 SINE B2 2 216 0 5 1434 5677 187 43 13 chr11 111356868 111358114 -10485742 - Lx2B LINE L1 -4 6996 5713 5 1434 291 275 125 25 chr11 111358114 111358314 -10485542 + MTD LTR MaLR 156 419 0 5 1434 299 366 42 106 chr11 111358326 111358543 -10485313 + B4 SINE B4 90 292 0 5 1434 217 258 0 31 chr11 111358543 111358558 -10485298 + (CA)n Simple_repeat Simple_repeat 1 15 0 5 1434 459 35 0 0 chr11 111358558 111358615 -10485241 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1434 217 258 0 31 chr11 111358615 111358663 -10485193 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1434 189 260 35 80 chr11 111359165 111359278 -10484578 + L3 LINE CR1 1179 1286 -3203 5 1434 707 252 42 34 chr11 111359973 111360236 -10483620 + Lx3C LINE L1 6710 6974 -2 5 1434 4216 52 0 0 chr11 111360278 111360781 -10483075 + RLTR1C LTR ERV1 1 503 0 5 1434 242 314 11 34 chr11 111360821 111360910 -10482946 - MTEb LTR MaLR -15 364 278 5 1434 2382 112 16 3 chr11 111361714 111362081 -10481775 + Lx LINE L1 5980 6351 -303 5 1434 417 316 119 21 chr11 111362152 111362346 -10481510 - HAL1 LINE L1 -590 1917 1705 5 1434 254 51 0 0 chr11 111362816 111362855 -10481001 - B3 SINE B2 -9 207 169 5 1434 393 302 44 19 chr11 111362869 111363075 -10480781 + Lx9 LINE L1 7306 7516 -128 5 1434 312 170 0 0 chr11 111363078 111363125 -10480731 - HAL1-3A_ME LINE L1 -836 2022 1976 5 1434 350 91 18 0 chr11 111363238 111363293 -10480563 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1434 246 121 45 0 chr11 111363610 111363676 -10480180 + T-rich Low_complexity Low_complexity 3 71 0 5 1434 1577 177 198 8 chr11 111365425 111365779 -10478077 + MTC LTR MaLR 1 421 0 5 1434 1179 55 0 0 chr11 111366636 111366782 -10477074 + B1_Mus1 SINE Alu 1 146 -2 5 1434 378 0 0 0 chr11 111366782 111366824 -10477032 + (TAA)n Simple_repeat Simple_repeat 2 43 0 5 1434 28 61 0 0 chr11 111367261 111367310 -10476546 + AT_rich Low_complexity Low_complexity 1 49 0 5 1434 1607 254 34 35 chr11 111367412 111367976 -10475880 - Lx9 LINE L1 -169 7475 6913 5 1434 423 0 0 0 chr11 111368226 111368273 -10475583 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1434 1744 280 74 21 chr11 111368450 111369100 -10474756 + Lx8 LINE L1 6182 6865 -608 5 1434 381 93 0 0 chr11 111369174 111369228 -10474628 + (T)n Simple_repeat Simple_repeat 1 54 0 5 1434 779 99 0 9 chr11 111369228 111369340 -10474516 - B1_Mm SINE Alu 0 147 37 5 1434 229 217 15 77 chr11 111369286 111369351 -10474505 - 4.5SRNA scRNA scRNA -8 86 26 5 1434 324 324 11 6 chr11 111369719 111369896 -10473960 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 1434 189 0 0 0 chr11 111370274 111370295 -10473561 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1434 468 0 0 0 chr11 111370549 111370601 -10473255 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1434 696 12 0 0 chr11 111370601 111370681 -10473175 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1434 661 250 0 37 chr11 111370681 111370833 -10473023 - B4A SINE B4 -20 272 126 5 1434 275 353 34 0 chr11 111370859 111370978 -10472878 - B4A SINE B4 -148 144 22 5 1434 983 102 6 0 chr11 111371249 111371426 -10472430 + (TTCTC)n Simple_repeat Simple_repeat 3 180 0 5 1434 315 0 0 0 chr11 111371426 111371461 -10472395 + (CTTCG)n Simple_repeat Simple_repeat 2 36 0 5 1434 525 147 0 0 chr11 111371459 111371554 -10472302 + (TC)n Simple_repeat Simple_repeat 2 96 0 5 1434 615 231 76 23 chr11 111371565 111371780 -10472076 - Lx4B LINE L1 -5 7053 6754 5 1434 688 214 58 29 chr11 111371780 111371953 -10471903 - B2_Mm2 SINE B2 -16 179 2 5 1434 389 280 28 18 chr11 111373079 111373188 -10470668 - B1F SINE Alu -6 143 34 5 1434 285 109 0 0 chr11 111373483 111373529 -10470327 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1434 393 224 103 0 chr11 111374599 111374706 -10469150 - MLT1A1 LTR MaLR 0 408 291 5 1434 320 307 73 25 chr11 111374942 111375216 -10468640 - L1M2 LINE L1 -671 5626 5340 6 1434 1455 241 27 3 chr11 111375353 111375686 -10468170 + Lx5 LINE L1 6627 6967 -83 6 1434 222 276 17 0 chr11 111377320 111377378 -10466478 + CT-rich Low_complexity Low_complexity 1 59 0 6 1434 760 268 94 37 chr11 111377706 111378109 -10465747 + L1_Mur3 LINE L1 496 921 -6791 6 1434 5221 85 10 3 chr11 111378685 111379414 -10464442 - L1_Mus3 LINE L1 0 6638 5905 6 1434 262 212 45 0 chr11 111379612 111379678 -10464178 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 6 1434 528 314 136 19 chr11 111379678 111379987 -10463869 - Lx8 LINE L1 -4 7469 7125 6 1434 400 356 57 11 chr11 111379989 111380165 -10463691 - Tigger9b DNA MER2_type -438 186 3 6 1434 3616 176 35 1 chr11 111380690 111381632 -10462224 - Lx2B LINE L1 -613 6387 5409 6 1434 2310 233 35 24 chr11 111381620 111382239 -10461617 + Lx2B LINE L1 6372 6997 -3 6 1434 4172 99 53 33 chr11 111382422 111383210 -10460646 + RLTR13D4 LTR ERVK 1 1033 0 6 1434 182 232 53 18 chr11 111383267 111383324 -10460532 + L2c LINE L2 3261 3319 -68 6 1434 315 324 15 70 chr11 111384138 111384337 -10459519 - AmnSINE1 SINE SINE -48 527 340 6 1434 354 271 95 78 chr11 111385149 111385445 -10458411 - MER45B DNA Tip100 -2 1038 738 6 1434 328 344 72 27 chr11 111385520 111385741 -10458115 - MER45B DNA Tip100 -453 587 357 6 1434 2997 255 50 6 chr11 111385877 111386699 -10457157 + Lx9 LINE L1 6491 7348 -296 6 1434 231 114 0 0 chr11 111386790 111386825 -10457031 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1434 26 30 0 0 chr11 111386869 111386902 -10456954 + AT_rich Low_complexity Low_complexity 1 33 0 6 1434 397 333 55 60 chr11 111386966 111387167 -10456689 - MER45B DNA Tip100 -747 293 94 6 1434 1628 249 66 8 chr11 111389338 111389734 -10454122 + MTD LTR MaLR 1 419 0 6 1434 866 116 7 0 chr11 111389769 111389907 -10453949 + (GGAGA)n Simple_repeat Simple_repeat 3 141 0 6 1434 513 0 0 0 chr11 111391240 111391297 -10452559 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1434 262 271 0 0 chr11 111391309 111391368 -10452488 - PB1D10 SINE Alu -25 92 34 6 1434 308 338 0 0 chr11 111391508 111391585 -10452271 - B3A SINE B2 -17 181 105 6 1434 853 303 74 23 chr11 111391629 111392021 -10451835 - BGLII_B LTR ERVK -29 412 1 6 1434 379 268 30 20 chr11 111392021 111392113 -10451743 - B3 SINE B2 -123 93 1 6 1434 389 322 8 0 chr11 111392666 111392825 -10451031 + (CA)n Simple_repeat Simple_repeat 1 160 0 6 1434 243 188 0 0 chr11 111392860 111392908 -10450948 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1434 301 286 7 7 chr11 111392957 111393105 -10450751 + (CA)n Simple_repeat Simple_repeat 1 148 0 6 1434 1758 132 51 82 chr11 111393147 111393478 -10450378 - ORR1A4 LTR MaLR -8 321 1 6 1434 297 109 0 0 chr11 111393518 111393564 -10450292 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1434 225 271 0 0 chr11 111393850 111393917 -10449939 + (CATA)n Simple_repeat Simple_repeat 1 67 0 6 1434 591 188 0 0 chr11 111394803 111394904 -10448952 + PB1D9 SINE Alu 20 120 0 6 1434 279 288 195 0 chr11 111394804 111394922 -10448934 + B4A SINE B4 106 246 -46 6 1434 266 197 15 29 chr11 111394952 111395020 -10448836 + Lx8 LINE L1 7407 7473 0 6 1434 615 303 85 18 chr11 111395125 111395397 -10448459 - MTD LTR MaLR -106 313 24 6 1434 243 0 0 0 chr11 111396099 111396126 -10447730 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1434 2216 289 88 77 chr11 111396311 111396683 -10447173 - Lx5 LINE L1 -1 7049 6638 6 1434 396 0 0 0 chr11 111396683 111396727 -10447129 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1434 2216 289 88 77 chr11 111396727 111397211 -10446645 - Lx5 LINE L1 -413 6637 6185 6 1434 294 369 100 7 chr11 111397237 111397387 -10446469 - RSINE1 SINE B4 0 165 2 6 1434 450 0 0 0 chr11 111397743 111397793 -10446063 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1434 21 0 0 0 chr11 111398352 111398373 -10445483 + AT_rich Low_complexity Low_complexity 1 21 0 6 1434 214 194 145 29 chr11 111402081 111402150 -10441706 - MIRc SINE MIR -69 199 123 6 1434 220 378 0 11 chr11 111402499 111402590 -10441266 + B4A SINE B4 2 91 -201 6 1434 899 267 0 5 chr11 111403505 111403697 -10440159 - B3A SINE B2 -6 192 2 6 1434 270 256 63 13 chr11 111403789 111403868 -10439988 - ID4 SINE ID 0 83 1 6 1434 818 112 41 0 chr11 111405212 111405381 -10438475 + GA-rich Low_complexity Low_complexity 2 177 0 6 1434 1363 45 0 11 chr11 111405386 111405567 -10438289 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1434 194 116 0 23 chr11 111405599 111405643 -10438213 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 1434 411 98 0 0 chr11 111405640 111405701 -10438155 + (TCTCCC)n Simple_repeat Simple_repeat 6 66 0 6 1434 315 0 0 0 chr11 111405701 111405736 -10438120 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1434 3447 46 5 0 chr11 111406180 111406574 -10437282 + MTA_Mm LTR MaLR 1 396 0 6 1434 707 275 70 31 chr11 111406630 111406859 -10436997 + MTD LTR MaLR 167 404 -15 6 1434 313 358 9 108 chr11 111407183 111407396 -10436460 + B3A SINE B2 4 195 -3 6 1434 251 367 91 53 chr11 111407921 111408318 -10435538 - MER34A LTR ERV1 -159 412 1 6 1434 758 122 0 43 chr11 111408836 111409024 -10434832 + CT-rich Low_complexity Low_complexity 1 180 0 6 1434 216 67 0 0 chr11 111409024 111409054 -10434802 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1434 443 309 75 27 chr11 111409072 111409258 -10434598 - B4 SINE B4 0 292 98 6 1434 435 211 80 37 chr11 111409339 111409526 -10434330 - Lx9 LINE L1 -31 7613 7419 6 1434 1102 313 33 55 chr11 111409539 111410084 -10433772 - Lx9 LINE L1 -127 7517 6985 6 1434 3299 86 2 2 chr11 111410604 111411025 -10432831 + BGLII LTR ERVK 1 421 0 6 179 792 321 67 11 chr11 111411052 111411411 -10432445 + Lx8 LINE L1 6471 6849 -624 6 1435 5972 103 94 2 chr11 111412002 111412873 -10430983 + Lx3C LINE L1 6025 6975 -1 6 1435 477 0 0 0 chr11 111412896 111412949 -10430907 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1435 460 246 22 58 chr11 111413011 111413149 -10430707 - RMER5 LTR ERV1 -369 165 33 6 1435 391 203 14 0 chr11 111413892 111413961 -10429895 - RSINE1 SINE B4 -15 150 81 6 1435 1980 218 19 7 chr11 111414125 111414541 -10429315 - MTC LTR MaLR 0 421 1 6 1435 446 49 16 0 chr11 111414715 111414776 -10429080 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1435 2074 264 65 25 chr11 111414966 111415026 -10428830 + Lx2B LINE L1 6117 6194 -864 6 1435 318 26 0 0 chr11 111415026 111415065 -10428791 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1435 3192 215 44 14 chr11 111415065 111415775 -10428081 + Lx2B LINE L1 6195 6925 -75 6 1435 25 0 0 0 chr11 111415792 111415817 -10428039 + AT_rich Low_complexity Low_complexity 1 25 0 6 1435 621 61 0 0 chr11 111415950 111416032 -10427824 + (GAA)n Simple_repeat Simple_repeat 1 82 0 6 1435 441 162 0 0 chr11 111416039 111416107 -10427749 + polypurine Low_complexity Low_complexity 4 71 0 6 1435 772 142 20 0 chr11 111416107 111416255 -10427601 + GA-rich Low_complexity Low_complexity 4 154 0 6 1435 267 60 0 57 chr11 111416370 111416423 -10427433 + (TCTCCC)n Simple_repeat Simple_repeat 6 55 0 6 1435 332 306 108 7 chr11 111416423 111416571 -10427285 - HAL1-3A_ME LINE L1 -419 2439 2277 6 1435 492 225 6 22 chr11 111417284 111417466 -10426390 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1435 357 82 0 0 chr11 111417483 111417532 -10426324 - HAL1-3A_ME LINE L1 -840 2018 1970 6 1435 459 342 85 5 chr11 111417655 111417843 -10426013 - MER58A DNA MER1_type 0 224 22 6 1435 648 301 21 148 chr11 111419168 111419499 -10424357 + B4A SINE B4 1 289 -3 6 1435 369 0 0 0 chr11 111420695 111420736 -10423120 + (CATA)n Simple_repeat Simple_repeat 3 43 0 6 1435 355 207 0 33 chr11 111420774 111420924 -10422932 + (TG)n Simple_repeat Simple_repeat 2 146 0 6 1435 305 328 141 42 chr11 111421438 111421629 -10422227 - LTR16B1 LTR ERVL -163 317 108 6 1435 689 67 10 0 chr11 111421760 111421864 -10421992 + (TC)n Simple_repeat Simple_repeat 2 106 0 6 1435 225 0 0 0 chr11 111421864 111421888 -10421968 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1435 225 0 0 0 chr11 111422664 111422689 -10421167 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1435 536 202 26 0 chr11 111422795 111422909 -10420947 - ORR1D2 LTR MaLR 0 370 254 6 1435 207 69 0 0 chr11 111422914 111422943 -10420913 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1435 1005 256 17 17 chr11 111423388 111423626 -10420230 - ORR1D2 LTR MaLR -124 246 9 6 1435 1117 106 0 16 chr11 111424110 111424292 -10419564 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1435 639 161 0 0 chr11 111424297 111424415 -10419441 + GA-rich Low_complexity Low_complexity 3 120 0 6 1435 612 222 95 15 chr11 111426685 111426822 -10417034 - RSINE1 SINE B4 -6 159 12 6 1435 498 255 118 21 chr11 111426924 111427068 -10416788 - B3 SINE B2 -1 215 58 6 1435 757 240 39 16 chr11 111427052 111427234 -10416622 - ORR1E LTR MaLR -173 186 1 6 1435 282 325 60 0 chr11 111427492 111427609 -10416247 - L1MEb LINE L1 -5900 170 47 6 1435 216 0 0 0 chr11 111428349 111428373 -10415483 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1435 195 333 0 0 chr11 111429899 111429941 -10413915 + L2 LINE L2 1 42 -3377 6 1435 247 267 75 62 chr11 111430757 111430778 -10413078 - ID_B1 SINE B4 -127 97 17 6 1435 301 203 85 0 chr11 111430778 111430837 -10413019 - BC1_Mm scRNA scRNA -72 80 17 6 1435 222 208 0 0 chr11 111430964 111431017 -10412839 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 6 1435 267 103 0 0 chr11 111431137 111431176 -10412680 + (TCC)n Simple_repeat Simple_repeat 3 41 0 6 1435 201 176 0 0 chr11 111431178 111431212 -10412644 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6 1435 721 333 32 32 chr11 111431212 111431460 -10412396 - B4 SINE B4 -44 248 1 6 1435 1419 275 16 28 chr11 111431933 111432306 -10411550 + ORR1D2 LTR MaLR 3 379 0 6 1435 952 265 19 0 chr11 111433522 111433733 -10410123 - B3 SINE B2 0 216 2 6 1435 3367 229 153 9 chr11 111434136 111435048 -10408808 - Lx6 LINE L1 -11 7449 6406 6 1435 2497 157 219 3 chr11 111435038 111435251 -10408605 - L1_Mur3 LINE L1 -2170 3710 3486 6 1435 396 0 0 0 chr11 111435251 111435295 -10408561 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 7 1435 2497 157 219 3 chr11 111435295 111435662 -10408194 - L1_Mur3 LINE L1 -2395 3485 3005 6 1435 3108 191 35 15 chr11 111435719 111436433 -10407423 - L1_Mur3 LINE L1 -3812 2068 1341 6 1435 2166 153 9 0 chr11 111436480 111436813 -10407043 + Lx4A LINE L1 6133 6468 -590 7 1435 234 204 0 0 chr11 111436809 111436853 -10407003 - L1_Mur3 LINE L1 -6825 903 860 6 1435 887 304 56 44 chr11 111436855 111437038 -10406818 - L1_Mur3 LINE L1 -7174 554 366 6 1435 351 0 0 0 chr11 111437038 111437077 -10406779 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1435 887 304 56 44 chr11 111437077 111437372 -10406484 - L1_Mur3 LINE L1 -7363 365 71 6 1435 1166 282 87 22 chr11 111437397 111437766 -10406090 - Lx8 LINE L1 -9 7464 7072 7 1435 502 265 0 17 chr11 111437875 111437994 -10405862 - RLTR31_Mur LTR ERVK -27 526 410 7 1435 223 26 0 71 chr11 111438197 111438239 -10405617 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 7 1435 1362 239 0 4 chr11 111438426 111438707 -10405149 + Lx2B LINE L1 6703 6982 -18 7 1435 514 256 40 28 chr11 111438737 111438914 -10404942 - Lx7 LINE L1 -9 7687 7509 7 1435 234 0 0 0 chr11 111438956 111438982 -10404874 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 7 1435 304 82 53 27 chr11 111439032 111439107 -10404749 + (TTTG)n Simple_repeat Simple_repeat 2 78 0 7 1435 1809 280 87 99 chr11 111439115 111440317 -10403539 + Lx9 LINE L1 6458 7644 0 7 1435 305 325 82 50 chr11 111440333 111440553 -10403303 + Lx9 LINE L1 6988 7214 -430 7 1435 369 0 0 0 chr11 111440686 111440727 -10403129 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1435 1301 141 13 4 chr11 111440871 111441099 -10402757 + L1_Mur2 LINE L1 5169 5398 -479 7 1435 4205 159 16 127 chr11 111441099 111441416 -10402440 + Lx2B LINE L1 5058 5296 -581 7 1435 1812 66 12 40 chr11 111441416 111441435 -10402421 + L1_Mus2 LINE L1 6322 6340 -226 7 1435 195 42 0 0 chr11 111441435 111441459 -10402397 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 7 1435 1812 66 12 40 chr11 111441459 111441691 -10402165 + L1_Mus2 LINE L1 6341 6564 -2 7 1435 6571 186 32 52 chr11 111441691 111443378 -10400478 + Lx2B LINE L1 5297 6993 -7 7 1435 1162 84 0 14 chr11 111443405 111443545 -10400311 + B1_Mus2 SINE Alu 1 139 -8 7 1435 394 45 0 56 chr11 111443545 111443616 -10400240 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 7 1435 493 314 80 11 chr11 111443758 111443945 -10399911 + B4A SINE B4 90 289 -3 7 1435 360 133 0 0 chr11 111444833 111444893 -10398963 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1435 1082 248 27 52 chr11 111445929 111446295 -10397561 - Lx6 LINE L1 0 7460 7104 7 1435 243 0 0 0 chr11 111446913 111446940 -10396916 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1435 405 0 0 0 chr11 111448778 111448823 -10395033 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1435 782 373 21 11 chr11 111449120 111449402 -10394454 - B4A SINE B4 0 292 8 7 1435 434 286 103 6 chr11 111449885 111450050 -10393806 - B3A SINE B2 -16 182 2 7 1435 437 305 73 38 chr11 111451250 111451591 -10392265 + Lx9 LINE L1 7283 7635 -9 7 1435 876 169 0 0 chr11 111451612 111451790 -10392066 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1435 449 171 68 8 chr11 111452487 111452605 -10391251 - Lx3B LINE L1 -3 6970 6846 7 1435 1249 264 44 18 chr11 111453817 111454246 -10389610 - Lx6 LINE L1 -198 7262 6455 7 1435 330 26 0 0 chr11 111454246 111454285 -10389571 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1435 1087 255 50 34 chr11 111454285 111454803 -10389053 - Lx6 LINE L1 -692 6768 5977 7 1435 29 98 0 0 chr11 111454950 111455042 -10388814 + AT_rich Low_complexity Low_complexity 1 92 0 7 1435 895 224 62 0 chr11 111455305 111455497 -10388359 - B3 SINE B2 -11 205 2 7 1435 603 358 95 49 chr11 111456505 111456852 -10387004 - MTE2a LTR MaLR -12 367 5 7 1435 958 310 0 8 chr11 111457551 111457798 -10386058 + B4 SINE B4 3 247 -45 7 1435 378 0 0 0 chr11 111457805 111457847 -10386009 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1435 1169 74 0 7 chr11 111457869 111458018 -10385838 + B1_Mus1 SINE Alu 1 148 0 7 1435 671 338 14 20 chr11 111458200 111458550 -10385306 + Lx9 LINE L1 7121 7468 -176 7 1435 272 250 141 0 chr11 111458651 111458743 -10385113 - PB1D7 SINE Alu -11 109 5 7 1435 37 0 0 0 chr11 111458833 111458870 -10384986 + AT_rich Low_complexity Low_complexity 1 37 0 7 1435 22 0 0 0 chr11 111459193 111459215 -10384641 + AT_rich Low_complexity Low_complexity 1 22 0 7 1435 741 132 0 0 chr11 111459559 111459680 -10384176 + (GGGAGA)n Simple_repeat Simple_repeat 1 121 0 7 1435 180 273 0 0 chr11 111459895 111459961 -10383895 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 7 1435 1989 319 47 36 chr11 111460698 111461696 -10382160 + Lx8 LINE L1 6413 7421 -52 7 1435 423 0 0 0 chr11 111461798 111461845 -10382011 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1435 683 54 11 0 chr11 111461845 111461936 -10381920 + (GA)n Simple_repeat Simple_repeat 2 94 0 7 1435 382 338 29 0 chr11 111461981 111462117 -10381739 - RMER15 LTR ERVL -33 542 403 7 1435 517 286 82 15 chr11 111462270 111462465 -10381391 + B3 SINE B2 8 215 -1 7 1435 21 0 0 0 chr11 111462467 111462488 -10381368 + AT_rich Low_complexity Low_complexity 1 21 0 7 1435 384 305 93 47 chr11 111462757 111463015 -10380841 + Lx8 LINE L1 7174 7443 -30 7 1435 511 208 182 0 chr11 111463286 111463517 -10380339 - Lx9 LINE L1 -8 7636 7364 7 1435 626 211 5 14 chr11 111463786 111463998 -10379858 + CT-rich Low_complexity Low_complexity 1 209 0 7 1435 461 351 99 0 chr11 111464530 111464661 -10379195 + RSINE1 SINE B4 6 149 -16 7 1435 423 365 34 7 chr11 111465129 111465278 -10378578 - RSINE1 SINE B4 -6 159 7 7 1435 197 65 32 0 chr11 111465614 111465645 -10378211 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 1435 887 102 0 7 chr11 111465646 111465784 -10378072 + (GGA)n Simple_repeat Simple_repeat 3 139 0 7 1435 28 0 0 0 chr11 111465842 111465870 -10377986 + AT_rich Low_complexity Low_complexity 1 28 0 7 1435 26 0 0 0 chr11 111466153 111466179 -10377677 + AT_rich Low_complexity Low_complexity 1 26 0 7 1435 432 55 0 0 chr11 111467248 111467303 -10376553 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7 1435 1586 106 128 17 chr11 111467303 111467591 -10376265 - Lx LINE L1 -17 6637 6318 7 1435 347 265 109 77 chr11 111467657 111467681 -10376175 - CYRA11_Mm Unknown Y-chromosome -222 395 198 7 1435 914 168 36 46 chr11 111467681 111467843 -10376013 + URR1A DNA MER1_type 35 199 -27 7 1435 1911 77 0 0 chr11 111467843 111468090 -10375766 + L1_Mus2 LINE L1 6319 6565 -1 7 1435 914 168 36 46 chr11 111468090 111468121 -10375735 + URR1A DNA MER1_type 200 226 0 7 1435 216 0 0 0 chr11 111468249 111468273 -10375583 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1435 297 286 67 110 chr11 111468612 111468883 -10374973 + L1_Mur2 LINE L1 5536 5829 -468 7 1435 278 309 106 77 chr11 111468884 111469125 -10374731 + ORR1E LTR MaLR 62 297 -77 7 1435 243 246 31 0 chr11 111469135 111469200 -10374656 + CT-rich Low_complexity Low_complexity 3 69 0 7 1435 367 274 78 63 chr11 111469342 111469533 -10374323 - MER67B LTR ERV1 -204 457 264 7 1435 206 267 65 26 chr11 111471239 111471316 -10372540 - MIR SINE MIR -31 231 152 7 1435 764 235 125 5 chr11 111472845 111472959 -10370897 - B3 SINE B2 -10 206 82 7 1435 252 0 0 0 chr11 111472959 111472987 -10370869 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1435 764 235 125 5 chr11 111472987 111473056 -10370800 - B3 SINE B2 -135 81 1 7 1435 765 258 26 5 chr11 111473559 111473750 -10370106 + B3 SINE B2 1 195 -21 7 1435 632 174 118 22 chr11 111473765 111473900 -10369956 + B1_Mur4 SINE Alu 3 150 0 7 1435 23 33 0 0 chr11 111473917 111473947 -10369909 + AT_rich Low_complexity Low_complexity 1 30 0 7 1435 459 0 0 0 chr11 111475852 111475903 -10367953 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1435 805 286 123 44 chr11 111475939 111476191 -10367665 - B4 SINE B4 -16 276 5 7 1435 24 32 0 0 chr11 111476706 111476737 -10367119 + AT_rich Low_complexity Low_complexity 1 31 0 7 1435 2313 146 5 8 chr11 111477116 111477497 -10366359 - Lx4A LINE L1 -487 6571 6192 7 1435 891 148 291 60 chr11 111477497 111477884 -10365972 + Lx4B LINE L1 6575 7050 -8 7 1435 804 161 0 0 chr11 111477885 111478028 -10365828 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 7 1435 332 360 30 36 chr11 111478459 111478626 -10365230 + MER20 DNA MER1_type 2 167 -52 7 1435 585 0 0 0 chr11 111478877 111478942 -10364914 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 1435 24 0 0 0 chr11 111480022 111480046 -10363810 + AT_rich Low_complexity Low_complexity 1 24 0 7 1435 243 0 0 0 chr11 111480632 111480659 -10363197 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1435 438 285 73 0 chr11 111481042 111481165 -10362691 - B1_Mus1 SINE Alu -5 143 12 7 1435 195 267 86 103 chr11 111481319 111481436 -10362420 - MIR SINE MIR -114 148 34 7 1435 546 267 96 10 chr11 111481552 111481749 -10362107 - B3 SINE B2 -2 214 1 7 1435 23 0 0 0 chr11 111482077 111482100 -10361756 + AT_rich Low_complexity Low_complexity 1 23 0 7 1435 304 235 93 80 chr11 111482834 111482996 -10360860 + Lx8 LINE L1 7289 7452 -21 7 1435 250 189 68 0 chr11 111482997 111483071 -10360785 + (TATG)n Simple_repeat Simple_repeat 2 80 0 7 1435 222 208 0 0 chr11 111483079 111483132 -10360724 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1435 464 271 30 12 chr11 111483260 111483428 -10360428 + Lx9 LINE L1 7323 7493 -151 7 1435 333 140 0 0 chr11 111483561 111483618 -10360238 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 1435 925 126 97 0 chr11 111483698 111483873 -10359983 - Lx3C LINE L1 -2 6974 6783 7 1435 796 172 97 19 chr11 111483895 111484049 -10359807 + B3 SINE B2 51 216 0 7 1435 295 23 0 43 chr11 111484096 111484142 -10359714 + (GGGGA)n Simple_repeat Simple_repeat 1 44 0 7 1435 547 310 42 0 chr11 111485943 111486085 -10357771 - ID_B1 SINE B4 -76 148 1 7 1435 639 291 22 0 chr11 111486435 111486614 -10357242 - B3A SINE B2 -15 183 1 7 1435 294 267 164 0 chr11 111486820 111486936 -10356920 + Lx6 LINE L1 7309 7443 -17 7 1435 297 169 0 0 chr11 111487192 111487251 -10356605 + (TTG)n Simple_repeat Simple_repeat 1 59 0 8 1435 1104 133 0 0 chr11 111487251 111487431 -10356425 + (CTG)n Simple_repeat Simple_repeat 1 180 0 8 1435 636 311 70 35 chr11 111487451 111487794 -10356062 + MT2A LTR ERVL 178 532 -1 8 1435 244 362 57 9 chr11 111489486 111489592 -10354264 - B1F SINE Alu -20 129 19 8 1435 468 0 0 0 chr11 111490313 111490365 -10353491 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1435 441 371 29 114 chr11 111490409 111490716 -10353140 - B4 SINE B4 -4 288 8 8 1435 708 296 9 71 chr11 111490776 111490987 -10352869 + B3A SINE B2 1 198 0 8 1435 1378 277 182 16 chr11 111491628 111492249 -10351607 + Lx6 LINE L1 6517 7240 -220 8 1435 2385 234 76 8 chr11 111492481 111493072 -10350784 - Lx6 LINE L1 -55 7405 6775 8 1435 189 0 0 0 chr11 111493149 111493170 -10350686 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1435 489 181 0 0 chr11 111493762 111493856 -10350000 + CT-rich Low_complexity Low_complexity 3 96 0 8 1435 1200 54 0 0 chr11 111493865 111494012 -10349844 - B1_Mus1 SINE Alu 0 148 2 8 1435 1302 266 101 16 chr11 111494282 111494836 -10349020 - L1_Mur3 LINE L1 -920 4960 4360 8 1435 22 56 0 0 chr11 111495240 111495276 -10348580 + AT_rich Low_complexity Low_complexity 1 36 0 8 1435 878 261 50 0 chr11 111496204 111496403 -10347453 - B3 SINE B2 -3 213 5 8 1435 25 31 0 0 chr11 111497183 111497215 -10346641 + AT_rich Low_complexity Low_complexity 1 32 0 8 1435 585 219 66 22 chr11 111497253 111497435 -10346421 - Lx2B LINE L1 -1 6999 6810 8 1435 2077 46 14 34 chr11 111497755 111498047 -10345809 - L1Md_F2 LINE L1 0 6582 6297 8 1435 303 28 0 0 chr11 111498195 111498231 -10345625 + (CAA)n Simple_repeat Simple_repeat 3 38 0 8 1435 486 314 96 26 chr11 111499707 111499978 -10343878 - B4A SINE B4 -2 290 1 8 1435 504 0 0 0 chr11 111500103 111500159 -10343697 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1435 279 0 0 0 chr11 111500159 111500189 -10343667 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1435 454 0 16 32 chr11 111500189 111500252 -10343604 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 3 1435 955 124 93 6 chr11 111500383 111500545 -10343311 + Lx2 LINE L1 6822 6997 0 4 1435 351 0 0 0 chr11 111500546 111500585 -10343271 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 5 1435 405 0 0 0 chr11 111500927 111500972 -10342884 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1435 21 36 0 0 chr11 111502664 111502692 -10341164 + AT_rich Low_complexity Low_complexity 1 28 0 7 1435 26 0 0 0 chr11 111503222 111503248 -10340608 + AT_rich Low_complexity Low_complexity 1 26 0 8 1435 609 14 0 0 chr11 111503329 111503399 -10340457 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 9 1435 252 0 0 0 chr11 111503500 111503528 -10340328 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1435 272 292 53 99 chr11 111505282 111505434 -10338422 + MT2B2 LTR ERVL 113 257 -327 1 1435 285 287 112 24 chr11 111505321 111505446 -10338410 + B4 SINE B4 70 205 -87 1 1435 627 159 9 0 chr11 111505341 111505448 -10338408 + B1_Mus2 SINE Alu 9 116 -31 1 1435 23 0 0 0 chr11 111505643 111505666 -10338190 + AT_rich Low_complexity Low_complexity 1 23 0 1 1435 186 103 0 0 chr11 111505666 111505695 -10338161 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1435 626 284 40 0 chr11 111505728 111505876 -10337980 - RSINE1 SINE B4 -8 157 4 1 1435 1244 281 96 10 chr11 111506490 111506874 -10336982 + MTD LTR MaLR 3 419 0 1 1435 4745 9 0 0 chr11 111507109 111507641 -10336215 + L1Md_A LINE L1 6049 6580 -2 1 1435 22 0 0 0 chr11 111509621 111509643 -10334213 + AT_rich Low_complexity Low_complexity 1 22 0 1 1435 201 143 0 0 chr11 111510365 111510400 -10333456 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1435 545 319 28 21 chr11 111510412 111510553 -10333303 - RSINE1 SINE B4 -19 146 5 2 1435 526 298 114 59 chr11 111510671 111510942 -10332914 + B4A SINE B4 7 292 0 2 1435 224 206 26 64 chr11 111510951 111511029 -10332827 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 2 1435 21 36 0 0 chr11 111511141 111511169 -10332687 + AT_rich Low_complexity Low_complexity 1 28 0 2 1435 25 65 0 0 chr11 111511370 111511416 -10332440 + AT_rich Low_complexity Low_complexity 1 46 0 2 1435 221 210 0 16 chr11 111511809 111511872 -10331984 + (TATG)n Simple_repeat Simple_repeat 4 65 0 2 1435 246 282 39 0 chr11 111511874 111511952 -10331904 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1435 531 294 11 53 chr11 111511958 111512148 -10331708 - B3A SINE B2 -16 182 1 2 1435 622 240 0 15 chr11 111512505 111512636 -10331220 - B1_Mur2 SINE Alu -9 140 12 2 1435 22 35 0 0 chr11 111515553 111515582 -10328274 + AT_rich Low_complexity Low_complexity 1 29 0 3 1435 208 200 20 20 chr11 111516509 111516560 -10327296 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 3 1435 199 137 51 44 chr11 111516575 111516712 -10327144 + (TATAA)n Simple_repeat Simple_repeat 5 142 0 3 1435 21 71 0 0 chr11 111516952 111516994 -10326862 + AT_rich Low_complexity Low_complexity 1 42 0 3 1435 22 35 0 0 chr11 111517085 111517114 -10326742 + AT_rich Low_complexity Low_complexity 1 29 0 3 1435 206 32 0 31 chr11 111517206 111517238 -10326618 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1435 1510 197 32 16 chr11 111517866 111518216 -10325640 + MTC LTR MaLR 59 419 -2 3 1435 549 283 37 25 chr11 111518783 111518946 -10324910 + B3A SINE B2 7 171 -27 3 1435 475 335 42 0 chr11 111519206 111519373 -10324483 - Lx8 LINE L1 -365 7108 6935 3 1435 207 121 103 0 chr11 111519519 111519577 -10324279 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 3 1435 241 324 0 0 chr11 111520230 111520298 -10323558 - ID4 SINE ID -13 70 3 4 1435 223 323 50 10 chr11 111520311 111520411 -10323445 - B1_Mur4 SINE Alu -16 134 31 4 1435 275 80 0 39 chr11 111520503 111520555 -10323301 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 4 1435 216 0 0 0 chr11 111520723 111520747 -10323109 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 1435 303 28 0 0 chr11 111520749 111520785 -10323071 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 1435 599 123 8 0 chr11 111520895 111521017 -10322839 + (TC)n Simple_repeat Simple_repeat 1 123 0 4 1435 1620 270 119 5 chr11 111521035 111521481 -10322375 - Lx6 LINE L1 -10 7450 6954 4 1435 466 112 56 0 chr11 111521519 111521608 -10322248 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 4 1435 284 306 51 2 chr11 111521840 111521976 -10321880 + Lx8 LINE L1 6860 7003 -693 4 1435 253 190 24 12 chr11 111522103 111522188 -10321668 + (TCTCTG)n Simple_repeat Simple_repeat 3 88 0 4 1435 283 238 35 75 chr11 111522218 111522391 -10321465 + (TCTA)n Simple_repeat Simple_repeat 1 166 0 5 1435 270 0 0 0 chr11 111523079 111523109 -10320747 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1435 417 54 0 0 chr11 111523109 111523164 -10320692 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1435 252 0 0 0 chr11 111523164 111523191 -10320665 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1435 321 135 0 0 chr11 111525044 111525096 -10318760 + (CAT)n Simple_repeat Simple_repeat 2 53 0 5 1435 459 325 71 0 chr11 111525111 111525280 -10318576 - B3A SINE B2 -16 182 2 5 1435 378 0 0 0 chr11 111525490 111525532 -10318324 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1435 2207 315 48 33 chr11 111525554 111526496 -10317360 - Lx8 LINE L1 -7 7466 6511 5 1435 2214 161 8 14 chr11 111526488 111526874 -10316982 - Lx4B LINE L1 -289 6769 6045 5 1435 895 151 30 65 chr11 111526874 111527073 -10316783 + B2_Mm2 SINE B2 2 193 -2 5 1435 874 308 20 64 chr11 111527073 111527141 -10316715 - Lx4B LINE L1 -592 6044 5991 5 1435 414 0 0 0 chr11 111527777 111527823 -10316033 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1435 282 327 98 20 chr11 111529314 111529524 -10314332 + MER58A DNA MER1_type 2 224 0 6 1435 3101 122 2 37 chr11 111530312 111530821 -10313035 - Lx2A1 LINE L1 -3 7005 6515 6 1435 308 275 63 28 chr11 111532115 111532257 -10311599 + L1MD LINE L1 3055 3201 -2945 6 1435 331 343 82 6 chr11 111532436 111532606 -10311250 - MLT1A0 LTR MaLR -172 193 11 6 1435 22 0 0 0 chr11 111533903 111533925 -10309931 + AT_rich Low_complexity Low_complexity 1 22 0 6 1435 198 0 0 0 chr11 111534757 111534779 -10309077 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1435 22 35 0 0 chr11 111534805 111534834 -10309022 + AT_rich Low_complexity Low_complexity 1 29 0 6 1435 548 215 47 0 chr11 111535030 111535137 -10308719 + RMER6B LTR ERVK 1 112 -349 6 1435 1082 157 243 0 chr11 111535137 111535372 -10308484 + RMER6A LTR ERVK 1 292 -464 6 1435 6873 135 10 3 chr11 111535373 111536492 -10307364 + Lx LINE L1 5519 6645 -9 7 1435 2147 163 37 61 chr11 111536515 111536973 -10306883 + RMER6A LTR ERVK 310 756 0 6 1435 213 39 0 0 chr11 111536973 111536999 -10306857 + (CCCCCT)n Simple_repeat Simple_repeat 2 27 0 7 1435 542 357 52 49 chr11 111537001 111537369 -10306487 + MLT1F2 LTR MaLR 192 560 0 7 1435 812 10 0 10 chr11 111537414 111537512 -10306344 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 7 1435 207 0 0 0 chr11 111537967 111537990 -10305866 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1435 624 297 82 65 chr11 111537991 111538344 -10305512 + Lx8 LINE L1 7094 7452 -21 7 1435 364 175 8 8 chr11 111538345 111538472 -10305384 + (TA)n Simple_repeat Simple_repeat 2 128 0 7 1435 21 57 0 0 chr11 111538547 111538582 -10305274 + AT_rich Low_complexity Low_complexity 1 35 0 7 1435 836 260 118 80 chr11 111538827 111539216 -10304640 - MTD LTR MaLR -14 405 2 7 1435 245 196 54 0 chr11 111539433 111539489 -10304367 - Lx7 LINE L1 -21 7675 7617 7 1435 236 0 88 0 chr11 111539525 111539559 -10304297 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 8 1435 1310 302 112 28 chr11 111539575 111540278 -10303578 - Lx7 LINE L1 -375 7321 6560 8 1435 969 345 75 19 chr11 111540285 111540455 -10303401 + Lx7 LINE L1 5999 6175 -1521 8 1435 234 91 0 0 chr11 111540455 111540488 -10303368 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 8 1435 969 345 75 19 chr11 111540488 111540854 -10303002 + Lx7 LINE L1 6176 6564 -1132 8 1435 783 32 0 0 chr11 111541006 111541100 -10302756 + (TC)n Simple_repeat Simple_repeat 1 94 0 8 1436 348 368 43 43 chr11 111542322 111542484 -10301372 + MamSINE1 SINE tRNA 20 181 -109 8 1436 396 0 0 0 chr11 111542743 111542787 -10301069 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1436 782 21 0 10 chr11 111543922 111544019 -10299837 + (TTC)n Simple_repeat Simple_repeat 2 97 0 8 1436 183 346 162 25 chr11 111544439 111544599 -10299257 + MER5A DNA MER1_type 5 186 -3 8 1436 424 248 16 8 chr11 111545041 111545163 -10298693 + Lx9 LINE L1 7375 7497 -147 8 1436 333 0 0 0 chr11 111545230 111545267 -10298589 + (GA)n Simple_repeat Simple_repeat 1 37 0 9 1436 34 42 0 0 chr11 111545315 111545363 -10298493 + AT_rich Low_complexity Low_complexity 1 48 0 9 1436 397 344 64 61 chr11 111545622 111545822 -10298034 - MLT1D LTR MaLR -121 384 183 9 1436 396 0 0 0 chr11 111545822 111545866 -10297990 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1436 397 344 64 61 chr11 111545866 111545978 -10297878 - MLT1D LTR MaLR -323 182 71 9 1436 584 245 54 13 chr11 111546223 111546372 -10297484 + RSINE1 SINE B4 8 162 -3 9 1436 252 0 0 0 chr11 111546372 111546400 -10297456 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 9 1436 190 176 19 19 chr11 111547667 111547719 -10296137 + CT-rich Low_complexity Low_complexity 1 52 0 9 1436 341 316 40 0 chr11 111548303 111548396 -10295460 + B1F1 SINE Alu 2 101 -19 9 1436 242 303 45 0 chr11 111548463 111548529 -10295327 - ID4 SINE ID -6 77 9 9 1436 219 167 0 0 chr11 111548932 111548974 -10294882 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 1436 315 0 0 0 chr11 111549661 111549696 -10294160 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1436 337 354 17 33 chr11 111549697 111549817 -10294039 - RSINE1 SINE B4 -5 160 43 1 1436 543 117 0 0 chr11 111550240 111550343 -10293513 + (TC)n Simple_repeat Simple_repeat 2 104 0 1 1436 549 0 0 0 chr11 111550344 111550405 -10293451 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1436 741 231 20 13 chr11 111550427 111550576 -10293280 - B3A SINE B2 -48 150 1 1 1436 531 0 0 0 chr11 111550762 111550821 -10293035 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1436 516 225 127 58 chr11 111550894 111551083 -10292773 - B3A SINE B2 -10 206 5 1 1436 25 83 0 0 chr11 111551095 111551155 -10292701 + AT_rich Low_complexity Low_complexity 1 60 0 1 1436 231 369 125 62 chr11 111552037 111552326 -10291530 - ORR1E LTR MaLR -52 307 1 1 1436 289 308 49 49 chr11 111552865 111552988 -10290868 + RSINE1 SINE B4 11 133 -32 1 1436 22 35 0 0 chr11 111553850 111553879 -10289977 + AT_rich Low_complexity Low_complexity 1 29 0 1 1436 567 0 0 0 chr11 111554580 111554643 -10289213 + (TTTTA)n Simple_repeat Simple_repeat 3 65 0 1 1436 1026 290 39 8 chr11 111554748 111555106 -10288750 - ORR1D2 LTR MaLR -1 369 1 1 1436 7594 99 6 9 chr11 111555354 111556705 -10287151 - L1_Mus3 LINE L1 -2 6636 5290 1 1436 1124 175 6 5 chr11 111556707 111556949 -10286907 + L1_Mur2 LINE L1 5081 5358 -942 1 1436 306 73 0 0 chr11 111557450 111557491 -10286365 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1436 933 82 89 0 chr11 111557491 111557626 -10286230 - B1_Mus1 SINE Alu 0 148 2 1 1436 954 329 89 25 chr11 111557764 111558548 -10285308 + Lx8 LINE L1 6631 7464 -9 1 1436 26 0 0 0 chr11 111558704 111558730 -10285126 + AT_rich Low_complexity Low_complexity 1 26 0 1 1436 1316 216 58 71 chr11 111559270 111559649 -10284207 + ORR1D1 LTR MaLR 1 374 0 1 1436 249 368 42 42 chr11 111559694 111559836 -10284020 - Tigger5 DNA MER2_type -2179 227 86 1 1436 255 21 41 41 chr11 111559859 111559908 -10283948 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 1 1436 866 282 10 0 chr11 111559918 111560113 -10283743 + B3 SINE B2 20 216 0 1 1436 21 36 0 0 chr11 111560113 111560141 -10283715 + AT_rich Low_complexity Low_complexity 1 28 0 1 1436 233 298 117 41 chr11 111560238 111560369 -10283487 - B1_Mur1 SINE Alu 0 149 13 1 1436 236 316 0 0 chr11 111562198 111562293 -10281563 + L1MA8 LINE L1 6185 6279 -12 1 1436 318 152 0 0 chr11 111563073 111563132 -10280724 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1 1436 301 230 0 129 chr11 111563137 111563222 -10280634 + B3 SINE B2 129 202 -14 1 1436 384 312 44 9 chr11 111563328 111563441 -10280415 + RSINE1 SINE B4 25 141 -24 1 1436 369 43 0 0 chr11 111563445 111563492 -10280364 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1436 22 0 0 0 chr11 111563622 111563644 -10280212 + AT_rich Low_complexity Low_complexity 1 22 0 1 1436 280 271 71 0 chr11 111563665 111563750 -10280106 + Lx8 LINE L1 6339 6429 -1044 1 1436 390 134 0 0 chr11 111563751 111563818 -10280038 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1436 2050 302 50 11 chr11 111563819 111564659 -10279197 + Lx8 LINE L1 6437 7309 -164 1 1436 233 277 0 30 chr11 111564692 111564759 -10279097 + (CATA)n Simple_repeat Simple_repeat 4 68 0 1 1436 676 256 87 0 chr11 111565029 111565224 -10278632 - B3 SINE B2 -1 215 4 1 1436 293 304 99 26 chr11 111565436 111565479 -10278377 + MER58A DNA MER1_type 50 93 -131 1 1436 213 39 0 0 chr11 111565479 111565505 -10278351 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1436 293 304 99 26 chr11 111565505 111565613 -10278243 + MER58A DNA MER1_type 94 211 -13 1 1436 351 0 0 0 chr11 111565793 111565832 -10278024 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1 1436 708 326 6 0 chr11 111565846 111566027 -10277829 - B3 SINE B2 -34 182 1 1 1436 1006 93 0 0 chr11 111567530 111567669 -10276187 + B1_Mus1 SINE Alu 2 140 -8 1 1436 782 91 8 0 chr11 111567677 111567798 -10276058 + (GAAAA)n Simple_repeat Simple_repeat 2 123 0 1 1436 351 132 0 0 chr11 111568716 111568784 -10275072 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1436 183 129 0 0 chr11 111568913 111568944 -10274912 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1436 207 0 0 0 chr11 111569033 111569056 -10274800 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1436 3938 22 2 0 chr11 111569720 111570303 -10273553 - L1Md_F2 LINE L1 -519 6063 5480 1 1436 4465 43 0 0 chr11 111570303 111570833 -10273023 + L1Md_F2 LINE L1 6053 6582 0 1 1436 287 331 70 32 chr11 111571980 111572136 -10271720 + RSINE1 SINE B4 2 163 -2 1 1436 309 326 78 45 chr11 111572202 111572446 -10271410 - L1MC4a LINE L1 -834 7048 6797 1 1436 225 0 0 0 chr11 111572959 111572984 -10270872 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1436 21 36 0 0 chr11 111573488 111573516 -10270340 + AT_rich Low_complexity Low_complexity 1 28 0 1 1436 855 109 0 0 chr11 111573661 111573808 -10270048 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 1436 258 222 14 0 chr11 111574310 111574382 -10269474 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1436 2617 225 75 92 chr11 111574439 111575297 -10268559 - RMER17B LTR ERVK -115 843 1 1 1436 4634 147 38 5 chr11 111575482 111576328 -10267528 - L1_Mur2 LINE L1 -1428 4449 3576 1 1436 809 136 13 6 chr11 111576328 111576484 -10267372 + Lx LINE L1 6492 6648 -6 1 1436 194 0 39 0 chr11 111576596 111576622 -10267234 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1 1436 545 288 13 6 chr11 111578115 111578272 -10265584 + RSINE1 SINE B4 4 161 -4 1 1436 1165 205 104 4 chr11 111578290 111578569 -10265287 + Lx5 LINE L1 6744 7050 0 1 1436 463 300 132 11 chr11 111580376 111580558 -10263298 - B3 SINE B2 -10 206 3 1 1436 1179 75 0 0 chr11 111580618 111580777 -10263079 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 1 1436 213 39 0 0 chr11 111581309 111581335 -10262521 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1436 444 213 8 0 chr11 111581339 111581461 -10262395 - Lx9 LINE L1 -7 7637 7515 1 1436 213 268 15 38 chr11 111581703 111581835 -10262021 + (TTATA)n Simple_repeat Simple_repeat 2 130 0 1 1436 262 273 65 0 chr11 111581875 111581952 -10261904 - Lx8 LINE L1 -131 7342 7261 1 1436 30 27 0 0 chr11 111582099 111582136 -10261720 + AT_rich Low_complexity Low_complexity 1 37 0 1 1436 22 0 0 0 chr11 111582142 111582164 -10261692 + AT_rich Low_complexity Low_complexity 1 22 0 1 1436 1039 22 15 0 chr11 111583394 111583528 -10260328 + (TCTCCC)n Simple_repeat Simple_repeat 1 136 0 1 1436 333 0 0 0 chr11 111583679 111583716 -10260140 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1436 441 104 0 0 chr11 111584176 111584253 -10259603 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1436 43 47 0 0 chr11 111584977 111585041 -10258815 + AT_rich Low_complexity Low_complexity 1 64 0 1 1436 297 0 0 0 chr11 111585683 111585716 -10258140 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1 1436 592 156 32 8 chr11 111585753 111585876 -10257980 - MurERV4-int LTR ERVK -1539 3721 3596 1 1436 316 316 0 0 chr11 111586197 111586330 -10257526 - MMSAT4 Satellite Satellite -5 163 31 1 1436 226 264 72 65 chr11 111586444 111586582 -10257274 - MMSAT4 Satellite Satellite 0 168 30 1 1436 338 306 15 15 chr11 111586700 111586913 -10256943 - MMSAT4 Satellite Satellite -5 213 1 1 1436 277 291 55 0 chr11 111586951 111587078 -10256778 - Lx9 LINE L1 -206 7438 7305 1 1436 3986 176 60 69 chr11 111587705 111587882 -10255974 - RMER19B LTR ERVK -12 890 706 1 1436 207 0 0 0 chr11 111587882 111587905 -10255951 + (CAG)n Simple_repeat Simple_repeat 1 23 0 1 1436 3986 176 60 69 chr11 111587905 111588607 -10255249 - RMER19B LTR ERVK -197 705 20 1 1436 1390 223 57 43 chr11 111588816 111589304 -10254552 + Lx9 LINE L1 7147 7641 -3 1 1436 870 235 60 39 chr11 111590115 111590161 -10253695 + RLTR15 LTR ERVK 1 49 -310 1 1436 198 71 0 0 chr11 111590161 111590189 -10253667 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 1 1436 870 235 60 39 chr11 111590189 111590478 -10253378 + RLTR15 LTR ERVK 50 342 -17 1 1436 1026 147 0 0 chr11 111590775 111591104 -10252752 + (TG)n Simple_repeat Simple_repeat 1 329 0 1 1436 248 337 11 85 chr11 111591121 111591215 -10252641 - B4 SINE B4 -7 285 199 1 1436 332 234 6 3 chr11 111591324 111591396 -10252460 + ID2 SINE ID 9 81 -71 1 1436 226 312 113 52 chr11 111591522 111591637 -10252219 + RLTR26 LTR ERVK 468 589 -53 1 1436 791 279 25 10 chr11 111591795 111591994 -10251862 + B3 SINE B2 12 213 -3 1 1436 715 257 9 82 chr11 111592420 111592653 -10251203 + B3 SINE B2 1 216 0 1 1436 510 17 0 0 chr11 111595567 111595626 -10248230 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1436 518 309 149 0 chr11 111595707 111595895 -10247961 - B4 SINE B4 -75 217 2 1 1436 279 318 7 104 chr11 111596231 111596375 -10247481 + ORR1E LTR MaLR 230 359 0 1 1436 238 316 13 26 chr11 111598181 111598259 -10245597 + RSINE1 SINE B4 4 80 -85 1 1436 314 293 0 42 chr11 111598340 111598436 -10245420 + B4A SINE B4 190 281 -11 1 1436 250 229 0 0 chr11 111598470 111598518 -10245338 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1436 237 146 0 0 chr11 111598529 111598577 -10245279 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1 1436 344 152 0 0 chr11 111598759 111598825 -10245031 + T-rich Low_complexity Low_complexity 1 66 0 1 1436 313 152 22 141 chr11 111598827 111598846 -10245010 - PB1D9 SINE Alu 0 120 107 1 1436 405 0 0 0 chr11 111598846 111598891 -10244965 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 1 1436 462 106 1 10 chr11 111598891 111598964 -10244892 - B1_Mus1 SINE Alu -41 107 40 1 1436 252 289 0 0 chr11 111599297 111599349 -10244507 + B3 SINE B2 111 162 -54 1 1436 842 111 165 32 chr11 111600602 111600760 -10243096 + B2_Mm2 SINE B2 3 181 -14 1 1436 584 282 14 7 chr11 111601221 111601364 -10242492 + B3A SINE B2 1 144 -54 1 1436 263 130 19 0 chr11 111602315 111602369 -10241487 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1436 348 298 147 30 chr11 111605354 111605654 -10238202 - L1M2 LINE L1 -2841 3302 2896 2 1436 477 62 0 0 chr11 111606143 111606208 -10237648 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1436 315 0 0 0 chr11 111607040 111607075 -10236781 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 2 1436 708 284 4 113 chr11 111607231 111607287 -10236569 + B3 SINE B2 8 49 -167 2 1436 1864 72 4 8 chr11 111607287 111607541 -10236315 - L1_Mus2 LINE L1 -2 6564 6312 2 1436 708 284 4 113 chr11 111607541 111607714 -10236142 + B3 SINE B2 50 212 -4 2 1436 325 283 68 38 chr11 111608681 111608813 -10235043 - MIR SINE MIR -97 165 30 2 1436 200 214 71 0 chr11 111608859 111608901 -10234955 + MIR SINE MIR 218 262 0 2 1436 406 285 34 14 chr11 111609658 111609804 -10234052 + B1F SINE Alu 1 149 0 2 1436 771 275 34 128 chr11 111609852 111610173 -10233683 + B4A SINE B4 1 291 -1 2 1436 662 0 0 13 chr11 111610177 111610256 -10233600 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1436 705 93 0 0 chr11 111610609 111610716 -10233140 + (TATG)n Simple_repeat Simple_repeat 2 108 0 2 1436 216 0 0 0 chr11 111611887 111611911 -10231945 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1436 23 54 0 0 chr11 111612054 111612091 -10231765 + AT_rich Low_complexity Low_complexity 1 37 0 2 1436 28 29 0 0 chr11 111612164 111612199 -10231657 + AT_rich Low_complexity Low_complexity 1 35 0 2 1436 243 373 0 19 chr11 111612268 111612372 -10231484 + RMER12 LTR ERVK 749 850 -472 2 1436 286 181 0 62 chr11 111612390 111612502 -10231354 - Lx9 LINE L1 -127 7517 7413 2 1436 265 343 28 19 chr11 111612846 111612953 -10230903 + MER5A1 DNA MER1_type 39 146 -20 2 1436 465 250 227 0 chr11 111613200 111613328 -10230528 + B4A SINE B4 50 206 -86 2 1436 220 259 45 123 chr11 111613608 111613719 -10230137 + PB1D7 SINE Alu 15 144 -5 2 1436 26 0 0 0 chr11 111613719 111613745 -10230111 + AT_rich Low_complexity Low_complexity 1 26 0 2 1436 788 251 11 16 chr11 111614381 111614563 -10229293 - B3A SINE B2 -10 188 8 2 1436 3944 91 7 2 chr11 111615099 111615641 -10228215 - L1_Mus4 LINE L1 -2 6634 6090 2 1436 369 43 0 0 chr11 111616107 111616154 -10227702 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1436 347 345 96 67 chr11 111616179 111616449 -10227407 - B4 SINE B4 -12 280 3 2 1436 25 0 0 0 chr11 111618104 111618129 -10225727 + AT_rich Low_complexity Low_complexity 1 25 0 2 1436 614 242 0 90 chr11 111618238 111618383 -10225473 - RSINE1 SINE B4 -25 140 9 2 1436 21 36 0 0 chr11 111619373 111619401 -10224455 + AT_rich Low_complexity Low_complexity 1 28 0 2 1436 396 0 0 0 chr11 111619458 111619502 -10224354 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1436 538 250 48 62 chr11 111619751 111619896 -10223960 + B3A SINE B2 1 143 -55 2 1436 453 19 0 0 chr11 111619909 111619963 -10223893 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1436 608 67 11 0 chr11 111619963 111620052 -10223804 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1436 249 159 0 0 chr11 111620052 111620115 -10223741 + CT-rich Low_complexity Low_complexity 1 63 0 2 1436 4367 249 100 20 chr11 111621703 111623087 -10220769 - Lx7 LINE L1 0 7696 6202 2 1436 711 35 0 0 chr11 111623131 111623217 -10220639 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1436 22 35 0 0 chr11 111623253 111623282 -10220574 + AT_rich Low_complexity Low_complexity 1 29 0 2 1436 1625 66 0 0 chr11 111623295 111623506 -10220350 - L1_Mus2 LINE L1 -3 6563 6353 2 1436 1083 103 13 0 chr11 111623506 111623662 -10220194 + L1_Mus2 LINE L1 6145 6302 -264 2 1436 407 239 199 0 chr11 111623665 111623866 -10219990 - Lx7 LINE L1 -1544 6152 5912 2 1436 207 88 0 0 chr11 111624182 111624216 -10219640 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1436 378 265 109 18 chr11 111624250 111624415 -10219441 + L1M6 LINE L1 8 187 -6309 2 1436 25 0 0 0 chr11 111624580 111624605 -10219251 + AT_rich Low_complexity Low_complexity 1 25 0 2 1436 830 335 34 96 chr11 111624824 111625326 -10218530 - Lx8 LINE L1 -146 7327 6857 2 1436 329 290 18 36 chr11 111625913 111626024 -10217832 + PB1D9 SINE Alu 12 120 0 2 1436 213 65 0 0 chr11 111626234 111626265 -10217591 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1436 355 205 16 49 chr11 111626265 111626388 -10217468 + Lx7 LINE L1 7578 7696 0 2 1436 237 381 17 17 chr11 111627020 111627140 -10216716 - L2a LINE L2 -5 3421 3302 2 1436 366 244 0 0 chr11 111627231 111627366 -10216490 + (CATAT)n Simple_repeat Simple_repeat 3 137 0 2 1436 753 241 23 6 chr11 111627366 111627537 -10216319 - MTE2a LTR MaLR 0 379 206 2 1436 253 228 43 0 chr11 111628391 111628483 -10215373 + GA-rich Low_complexity Low_complexity 6 101 0 2 1436 270 0 0 0 chr11 111629227 111629257 -10214599 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2 1436 402 268 0 0 chr11 111629288 111629385 -10214471 + Lx8 LINE L1 7172 7268 -205 2 1436 28 29 0 0 chr11 111629566 111629601 -10214255 + AT_rich Low_complexity Low_complexity 1 35 0 2 1436 528 93 0 0 chr11 111629897 111629972 -10213884 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1436 246 371 21 43 chr11 111629996 111630089 -10213767 + B1F1 SINE Alu 10 100 -49 2 1436 341 275 36 81 chr11 111630007 111630118 -10213738 + ID_B1 SINE B4 103 208 -16 2 1436 492 18 0 0 chr11 111630134 111630191 -10213665 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1436 338 195 47 30 chr11 111630203 111630372 -10213484 + (TA)n Simple_repeat Simple_repeat 2 173 0 2 1436 2036 227 12 10 chr11 111630558 111630976 -10212880 + MTD LTR MaLR 1 419 0 2 1436 332 186 17 17 chr11 111631903 111632023 -10211833 + CT-rich Low_complexity Low_complexity 2 121 0 2 1436 528 45 0 0 chr11 111632040 111632107 -10211749 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1436 393 320 188 24 chr11 111632111 111632361 -10211495 - B4 SINE B4 -1 291 1 2 1436 329 277 0 57 chr11 111632441 111632529 -10211327 - HAL1-3A_ME LINE L1 -504 2354 2272 2 1436 342 248 74 12 chr11 111632982 111633107 -10210749 + MTE2a LTR MaLR 194 355 -45 2 1436 207 0 0 0 chr11 111633506 111633529 -10210327 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1436 602 329 79 51 chr11 111633847 111634100 -10209756 + B4A SINE B4 31 290 -2 2 1436 252 233 0 0 chr11 111634177 111634250 -10209606 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1436 201 229 32 16 chr11 111634252 111634314 -10209542 + (CATA)n Simple_repeat Simple_repeat 2 64 0 2 1436 3415 25 5 0 chr11 111634676 111635069 -10208787 + MTA_Mm LTR MaLR 1 395 -1 2 1436 209 208 21 0 chr11 111635305 111635353 -10208503 + (TTG)n Simple_repeat Simple_repeat 3 51 0 2 1436 489 17 0 0 chr11 111635695 111635753 -10208103 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1436 543 300 87 87 chr11 111635786 111636005 -10207851 - B4 SINE B4 -73 219 1 2 1436 456 277 70 57 chr11 111636589 111636746 -10207110 + RSINE1 SINE B4 3 161 -4 2 1436 210 37 0 0 chr11 111637397 111637424 -10206432 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 2 1436 884 164 0 5 chr11 111637544 111637761 -10206095 + (TA)n Simple_repeat Simple_repeat 1 215 0 2 1436 1246 107 0 6 chr11 111637837 111638015 -10205841 - B2_Mm2 SINE B2 -18 177 1 2 1436 565 316 102 19 chr11 111638097 111638519 -10205337 - L1MA4A LINE L1 -386 5917 5461 2 1436 22 56 0 0 chr11 111639753 111639789 -10204067 + AT_rich Low_complexity Low_complexity 1 36 0 2 1436 705 265 30 30 chr11 111639865 111640067 -10203789 - B3 SINE B2 -13 203 2 2 1436 1972 204 105 17 chr11 111640124 111640647 -10203209 - RMER4B LTR ERVK 0 585 17 2 1436 623 257 52 167 chr11 111640670 111640880 -10202976 - B3A SINE B2 -4 191 6 2 1436 450 0 0 0 chr11 111640906 111640956 -10202900 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1436 380 331 45 8 chr11 111641164 111641298 -10202558 - MER5A DNA MER1_type 0 189 51 2 1436 785 343 28 28 chr11 111641756 111642038 -10201818 - B4A SINE B4 -2 290 9 2 1436 854 71 8 0 chr11 111642063 111642190 -10201666 + (TAGA)n Simple_repeat Simple_repeat 4 131 0 2 1436 1031 8 0 16 chr11 111642199 111642324 -10201532 + (GGGAGA)n Simple_repeat Simple_repeat 3 125 0 2 1436 23 0 0 0 chr11 111643103 111643126 -10200730 + AT_rich Low_complexity Low_complexity 1 23 0 2 1436 388 285 149 57 chr11 111643900 111643933 -10199923 - B3A SINE B2 -2 196 167 2 1436 552 30 0 0 chr11 111643933 111643999 -10199857 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 1436 388 285 149 57 chr11 111643999 111644140 -10199716 - B3A SINE B2 -32 166 6 2 1436 417 287 153 7 chr11 111644431 111644568 -10199288 - B3 SINE B2 -57 159 3 2 1436 214 26 25 50 chr11 111644860 111644900 -10198956 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1436 352 314 101 31 chr11 111644960 111645187 -10198669 - Lx8 LINE L1 -337 7136 6894 2 1436 437 316 6 33 chr11 111645435 111645618 -10198238 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 2 1436 186 43 0 0 chr11 111645639 111645662 -10198194 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2 1436 450 228 12 12 chr11 111645665 111645829 -10198027 + (TATATG)n Simple_repeat Simple_repeat 4 167 0 2 1436 393 310 7 0 chr11 111645830 111645972 -10197884 + (TATG)n Simple_repeat Simple_repeat 2 144 0 2 1436 198 143 0 0 chr11 111647002 111647037 -10196819 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2 1436 296 96 0 37 chr11 111647066 111647120 -10196736 + (GGGAGA)n Simple_repeat Simple_repeat 3 54 0 2 1436 780 226 80 75 chr11 111647297 111647536 -10196320 + MTE2a LTR MaLR 123 362 -17 2 1436 348 268 67 84 chr11 111647761 111647940 -10195916 - Cheshire DNA MER1_type -2142 278 103 2 1436 276 30 0 0 chr11 111648119 111648152 -10195704 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1436 239 278 27 36 chr11 111648169 111648281 -10195575 - Lx9 LINE L1 -206 7438 7328 2 1436 6257 41 0 0 chr11 111648393 111649143 -10194713 - L1Md_T LINE L1 -1 6581 5832 2 1436 1111 45 6 13 chr11 111649667 111649823 -10194033 - L1Md_F3 LINE L1 0 6584 6430 3 1436 3486 17 0 0 chr11 111649823 111650230 -10193626 + L1Md_F3 LINE L1 6039 6445 -139 3 1436 249 290 34 109 chr11 111650230 111650250 -10193606 - B3A SINE B2 -60 138 3 3 1436 359 328 31 39 chr11 111650250 111650377 -10193479 - B4A SINE B4 -164 128 3 3 1436 202 305 0 0 chr11 111651971 111652030 -10191826 + C-rich Low_complexity Low_complexity 1 59 0 3 1436 343 321 77 62 chr11 111652868 111653077 -10190779 - MLT1A LTR MaLR -8 366 155 3 1436 180 0 0 0 chr11 111653077 111653097 -10190759 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1436 743 286 91 29 chr11 111653287 111653365 -10190491 + ORR1D2 LTR MaLR 80 163 -207 3 1436 315 0 0 0 chr11 111653365 111653400 -10190456 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1436 743 286 91 29 chr11 111653400 111653595 -10190261 + ORR1D2 LTR MaLR 164 370 0 3 1436 23 0 0 0 chr11 111655047 111655070 -10188786 + AT_rich Low_complexity Low_complexity 1 23 0 3 1436 246 194 129 0 chr11 111655178 111655240 -10188616 + ID4_ SINE ID 1 70 -13 3 1436 339 44 0 0 chr11 111655538 111655583 -10188273 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1436 293 302 91 45 chr11 111656132 111656264 -10187592 + B1F2 SINE Alu 12 149 0 3 1436 211 28 0 53 chr11 111656275 111656313 -10187543 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 3 1436 378 0 0 0 chr11 111656372 111656414 -10187442 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1436 874 213 24 95 chr11 111658092 111658388 -10185468 + MTC-int LTR MaLR 984 1258 0 3 1436 2044 224 14 55 chr11 111658388 111658679 -10185177 + MTC LTR MaLR 1 284 -137 3 1436 2076 183 172 32 chr11 111658679 111659215 -10184641 - RMER19C LTR ERVK 0 611 1 3 1436 2044 224 14 55 chr11 111659215 111659362 -10184494 + MTC LTR MaLR 285 421 0 3 1436 620 326 12 33 chr11 111659382 111659626 -10184230 - MLT2C2 LTR ERVL -222 242 4 3 1436 279 289 97 28 chr11 111659673 111659945 -10183911 - L1MC LINE L1 -512 5832 5544 3 1436 21 0 0 0 chr11 111660128 111660149 -10183707 + AT_rich Low_complexity Low_complexity 1 21 0 3 1436 233 309 24 0 chr11 111660160 111660244 -10183612 - L1MEd LINE L1 -5646 473 388 3 1436 278 171 14 0 chr11 111660811 111660881 -10182975 + (TATG)n Simple_repeat Simple_repeat 4 74 0 3 1436 323 333 118 20 chr11 111661087 111661240 -10182616 + MER74C LTR ERVL 9 176 -284 3 1436 22 35 0 0 chr11 111661356 111661385 -10182471 + AT_rich Low_complexity Low_complexity 1 29 0 3 1436 222 193 35 0 chr11 111661693 111661750 -10182106 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1436 459 0 0 0 chr11 111661863 111661914 -10181942 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1436 859 182 0 13 chr11 111661937 111662087 -10181769 + B1_Mus1 SINE Alu 1 148 0 3 1436 239 347 35 40 chr11 111662305 111662503 -10181353 + L1MC LINE L1 5607 5803 -1982 3 1436 378 241 14 7 chr11 111663979 111664125 -10179731 + (TA)n Simple_repeat Simple_repeat 2 148 0 3 1436 747 148 0 0 chr11 111664278 111664413 -10179443 + Lx3A LINE L1 6835 6969 -12 3 1436 231 36 0 0 chr11 111664413 111664441 -10179415 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 3 1436 1339 338 52 56 chr11 111664624 111665167 -10178689 + Lx8 LINE L1 5674 6228 -1245 3 1436 461 17 17 0 chr11 111665167 111665225 -10178631 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3 1436 1339 348 64 73 chr11 111665225 111665239 -10178617 + Lx8 LINE L1 6229 6235 -1238 3 1436 207 114 0 0 chr11 111665239 111665274 -10178582 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1436 1339 348 64 73 chr11 111665274 111666321 -10177535 + Lx8 LINE L1 6236 7251 -222 3 1436 571 315 63 36 chr11 111666417 111666720 -10177136 + Lx8 LINE L1 6226 6536 -937 3 1436 353 321 197 14 chr11 111666935 111667229 -10176627 + ORR1E LTR MaLR 8 355 -4 3 1436 260 291 49 41 chr11 111667434 111667556 -10176300 - BC1_Mm scRNA scRNA -27 125 3 3 1436 222 118 0 0 chr11 111667994 111668028 -10175828 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1436 582 316 26 0 chr11 111670124 111670279 -10173577 + B3A SINE B2 2 160 -38 3 1436 426 20 0 0 chr11 111670281 111670332 -10173524 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1436 575 172 8 0 chr11 111670335 111670469 -10173387 + GA-rich Low_complexity Low_complexity 2 136 0 3 1436 497 353 26 32 chr11 111670506 111670696 -10173160 + MER3 DNA MER1_type 20 208 -1 3 1436 1173 75 0 0 chr11 111670868 111671015 -10172841 + B1_Mus1 SINE Alu 2 148 0 3 1436 446 216 74 20 chr11 111671027 111671134 -10172722 + B3 SINE B2 27 139 -54 3 1436 195 42 0 0 chr11 111672048 111672072 -10171784 + (TAA)n Simple_repeat Simple_repeat 1 24 0 3 1436 333 236 78 52 chr11 111672116 111672232 -10171624 - MLT1A1 LTR MaLR -3 405 287 3 1436 421 290 10 0 chr11 111672572 111672672 -10171184 - ID_B1 SINE B4 -13 211 111 3 1436 269 263 42 10 chr11 111673000 111673096 -10170760 + MER34 LTR ERV1 381 479 -63 3 1436 414 0 0 0 chr11 111673206 111673252 -10170604 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 179 339 404 57 6 chr11 111673286 111673443 -10170413 + RSINE1 SINE B4 1 165 0 3 1437 204 40 0 0 chr11 111673577 111673602 -10170254 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1437 263 270 0 0 chr11 111674671 111674734 -10169122 + G-rich Low_complexity Low_complexity 1 63 0 3 1437 1215 156 12 67 chr11 111674906 111675161 -10168695 + Lx2B LINE L1 6750 6990 -10 3 1437 445 294 95 6 chr11 111675234 111675402 -10168454 - MER58B DNA MER1_type -15 326 144 3 1437 536 145 28 0 chr11 111675718 111675863 -10167993 + (TA)n Simple_repeat Simple_repeat 2 150 0 3 1437 246 242 16 16 chr11 111676592 111676655 -10167201 + RMER6B LTR ERVK 368 430 -31 3 1437 546 295 36 27 chr11 111676673 111676896 -10166960 - Lx6 LINE L1 -57 7403 7179 3 1437 1910 112 31 13 chr11 111677271 111677588 -10166268 + L1_Mus4 LINE L1 6313 6635 -1 3 1437 1035 197 99 52 chr11 111677621 111677964 -10165892 - RLTR10D LTR ERVK 0 359 1 3 1437 635 262 15 49 chr11 111678436 111678641 -10165215 + B3A SINE B2 1 198 0 3 1437 200 241 17 0 chr11 111678647 111678705 -10165151 + GA-rich Low_complexity Low_complexity 1 59 0 3 1437 236 280 64 87 chr11 111679002 111679174 -10164682 + MER34A LTR ERV1 404 571 0 3 1437 957 185 66 188 chr11 111680372 111680839 -10163017 - RMER17C LTR ERVK 0 410 1 3 1437 315 0 0 0 chr11 111681103 111681138 -10162718 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1437 272 120 20 0 chr11 111681138 111681188 -10162668 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1437 22 0 0 0 chr11 111681536 111681558 -10162298 + AT_rich Low_complexity Low_complexity 1 22 0 3 1437 861 313 39 73 chr11 111683079 111683475 -10160381 + MTE2a LTR MaLR 21 419 0 3 1437 22 56 0 0 chr11 111683748 111683784 -10160072 + AT_rich Low_complexity Low_complexity 1 36 0 3 1437 311 309 33 7 chr11 111683880 111684030 -10159826 - L1MD LINE L1 -415 5827 5674 3 1437 556 310 107 27 chr11 111684602 111684654 -10159202 - B4A SINE B4 0 292 238 3 1437 650 250 57 28 chr11 111684654 111684831 -10159025 - B3A SINE B2 -16 182 1 3 1437 556 310 107 27 chr11 111684831 111685040 -10158816 - B4A SINE B4 -55 237 10 3 1437 513 58 0 0 chr11 111686010 111686079 -10157777 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1437 418 333 16 24 chr11 111686092 111686218 -10157638 - RSINE1 SINE B4 -38 127 3 3 1437 430 252 46 30 chr11 111686380 111686511 -10157345 - HAL1-2a_MD LINE L1 -536 2488 2356 3 1437 333 275 199 0 chr11 111686688 111686819 -10157037 + RSINE1 SINE B4 3 159 -6 3 1437 25 95 0 0 chr11 111687155 111687229 -10156627 + AT_rich Low_complexity Low_complexity 1 74 0 3 1437 263 26 0 49 chr11 111688176 111688217 -10155639 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1437 902 183 0 0 chr11 111688238 111688380 -10155476 - B1_Mur4 SINE Alu -7 143 2 3 1437 326 219 13 38 chr11 111688467 111688624 -10155232 + (TATATG)n Simple_repeat Simple_repeat 1 153 0 3 1437 302 72 0 23 chr11 111688626 111688669 -10155187 - HAL1-3A_ME LINE L1 -846 2012 1971 3 1437 248 268 146 0 chr11 111688863 111688945 -10154911 + PB1 SINE Alu 29 122 -5 3 1437 668 336 53 42 chr11 111688936 111689219 -10154637 - MTD LTR MaLR -127 292 7 3 1437 222 105 0 0 chr11 111690548 111690586 -10153270 + (CAGA)n Simple_repeat Simple_repeat 4 41 0 3 1437 282 292 149 28 chr11 111690911 111691052 -10152804 - ORR1E LTR MaLR -105 254 97 3 1437 207 0 0 0 chr11 111692912 111692935 -10150921 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1437 419 148 113 0 chr11 111693377 111693492 -10150364 - Lx9 LINE L1 0 7644 7517 3 1437 675 40 0 29 chr11 111693492 111693594 -10150262 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1437 253 246 31 0 chr11 111693594 111693659 -10150197 - Lx9 LINE L1 -179 7465 7399 3 1437 324 260 20 40 chr11 111694371 111694471 -10149385 - B4 SINE B4 -1 291 194 3 1437 694 222 125 16 chr11 111695294 111695486 -10148370 + B3 SINE B2 2 214 -2 3 1437 609 49 0 0 chr11 111698051 111698132 -10145724 + (TC)n Simple_repeat Simple_repeat 1 81 0 3 1437 531 0 0 0 chr11 111698903 111698962 -10144894 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1437 189 0 0 0 chr11 111698962 111698982 -10144874 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1437 304 176 14 49 chr11 111699292 111699435 -10144421 + (TCTCTG)n Simple_repeat Simple_repeat 3 140 0 3 1437 293 339 70 20 chr11 111700811 111701010 -10142846 - MIR SINE MIR -41 221 13 3 1437 254 152 53 21 chr11 111701608 111701702 -10142154 + GA-rich Low_complexity Low_complexity 2 98 0 3 1437 359 298 7 71 chr11 111701946 111702087 -10141769 + B3 SINE B2 85 216 0 3 1437 32 86 0 0 chr11 111702357 111702438 -10141418 + AT_rich Low_complexity Low_complexity 1 81 0 3 1437 199 0 31 31 chr11 111702746 111702778 -10141078 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 3 1437 262 366 59 59 chr11 111702852 111703122 -10140734 + MTEa LTR MaLR 35 304 -75 3 1437 308 372 18 0 chr11 111703096 111703209 -10140647 + MT2A LTR ERVL 307 421 -112 3 1437 531 0 0 0 chr11 111703260 111703319 -10140537 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1437 498 61 0 0 chr11 111703399 111703465 -10140391 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 4 1437 432 0 0 0 chr11 111703467 111703515 -10140341 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1437 533 224 25 57 chr11 111703776 111704059 -10139797 - RMER17C LTR ERVK -84 326 1 4 1437 22 0 0 0 chr11 111704154 111704176 -10139680 + AT_rich Low_complexity Low_complexity 1 22 0 4 1437 304 293 83 39 chr11 111704288 111704444 -10139412 + L1MC3 LINE L1 7158 7320 -465 4 1437 323 338 41 100 chr11 111704575 111704795 -10139061 + L1MC3 LINE L1 7339 7545 -240 4 1437 203 0 0 36 chr11 111706568 111706596 -10137260 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 1437 21 0 0 0 chr11 111707567 111707588 -10136268 + AT_rich Low_complexity Low_complexity 1 21 0 4 1437 366 264 143 0 chr11 111708391 111708482 -10135374 + B3A SINE B2 1 104 -94 4 1437 186 133 0 0 chr11 111708500 111708530 -10135326 + (TAAG)n Simple_repeat Simple_repeat 1 30 0 4 1437 462 149 20 10 chr11 111708637 111708739 -10135117 + CT-rich Low_complexity Low_complexity 2 104 0 4 1437 629 106 10 3 chr11 111708746 111708842 -10135014 - B1_Mus2 SINE Alu 0 147 19 4 1437 461 353 33 7 chr11 111709017 111709168 -10134688 + RSINE1 SINE B4 3 157 -8 4 1437 403 373 104 31 chr11 111710199 111710459 -10133397 - B4A SINE B4 -13 279 1 4 1437 369 75 0 0 chr11 111711332 111711385 -10132471 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1437 314 217 8 57 chr11 111711400 111711522 -10132334 + Lx9 LINE L1 7524 7639 -5 4 1437 1514 72 5 9 chr11 111711680 111711892 -10131964 - L1Md_F2 LINE L1 -12 6570 6360 4 1437 2535 67 173 0 chr11 111711888 111712246 -10131610 - L1_Mus2 LINE L1 -19 6547 6128 4 1437 654 225 138 11 chr11 111713139 111713328 -10130528 + B3 SINE B2 1 213 -3 4 1437 6535 130 25 43 chr11 111713444 111714128 -10129728 - Lx2A LINE L1 0 7008 6345 4 1437 216 0 0 0 chr11 111714128 111714152 -10129704 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1437 6535 130 25 43 chr11 111714152 111714691 -10129165 - Lx2A LINE L1 -664 6344 5808 4 1437 4739 53 7 2 chr11 111714994 111715581 -10128275 + L1_Mus1 LINE L1 5978 6567 0 4 1437 324 0 0 0 chr11 111715752 111715788 -10128068 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1437 284 286 32 97 chr11 111715859 111715919 -10127937 + LTR48 LTR ERV1 13 75 -712 4 1437 1011 148 99 38 chr11 111715919 111716130 -10127726 - URR1A DNA MER1_type -1 225 2 4 1437 284 286 32 97 chr11 111716130 111716224 -10127632 + LTR48 LTR ERV1 76 157 -630 4 1437 797 329 42 19 chr11 111718505 111718671 -10125185 + Lx5 LINE L1 6599 6762 -288 4 1437 189 0 0 0 chr11 111718671 111718692 -10125164 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1437 797 295 155 23 chr11 111718692 111718928 -10124928 + Lx5 LINE L1 6763 6918 -132 4 1437 459 0 0 0 chr11 111719142 111719193 -10124663 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1437 442 46 31 0 chr11 111719195 111719260 -10124596 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1437 505 186 29 69 chr11 111719715 111719888 -10123968 - Lx9 LINE L1 -2 7642 7477 4 1437 354 151 0 0 chr11 111719950 111720023 -10123833 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1437 1204 234 0 42 chr11 111720031 111720366 -10123490 - Lx9 LINE L1 -255 7389 7069 4 1437 259 247 14 0 chr11 111720366 111720439 -10123417 + Lx9 LINE L1 6922 6995 -649 4 1437 180 0 0 0 chr11 111721139 111721159 -10122697 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1437 268 182 39 0 chr11 111721306 111721383 -10122473 + CT-rich Low_complexity Low_complexity 2 81 0 4 1437 347 273 22 44 chr11 111722376 111722499 -10121357 - PB1D7 SINE Alu -1 116 1 4 1437 602 116 51 9 chr11 111723093 111723208 -10120648 - ORR1B2 LTR MaLR 0 367 208 4 1437 336 292 240 48 chr11 111723737 111724175 -10119681 + L1M4 LINE L1 4618 5139 -1007 4 1437 1161 260 107 41 chr11 111724340 111724778 -10119078 + Lx8 LINE L1 6687 7153 -320 4 1437 836 47 8 23 chr11 111724929 111725061 -10118795 + L1Md_F3 LINE L1 6454 6583 -1 4 1437 1038 285 6 41 chr11 111725809 111726127 -10117729 + RMER15 LTR ERVL 215 521 -54 4 1437 372 77 0 0 chr11 111726128 111726180 -10117676 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1437 188 304 24 48 chr11 111726605 111726688 -10117168 + L2 LINE L2 47 127 -3292 4 1437 218 171 0 0 chr11 111726744 111726779 -10117077 + GA-rich Low_complexity Low_complexity 1 35 0 4 1437 28 29 0 0 chr11 111727209 111727244 -10116612 + AT_rich Low_complexity Low_complexity 1 35 0 4 1437 23 0 0 0 chr11 111728803 111728826 -10115030 + AT_rich Low_complexity Low_complexity 1 23 0 4 1437 517 227 98 0 chr11 111729074 111729206 -10114650 + B1_Mus1 SINE Alu 4 148 0 4 1437 235 351 7 15 chr11 111729226 111729362 -10114494 + L1M2 LINE L1 2485 2619 -4230 4 1437 223 176 22 45 chr11 111729521 111729610 -10114246 + (TATAA)n Simple_repeat Simple_repeat 3 89 0 4 1437 496 301 43 0 chr11 111729656 111729842 -10114014 - Lx9 LINE L1 -243 7401 7208 4 1437 235 195 0 163 chr11 111729857 111729930 -10113926 + Lx9 LINE L1 7404 7457 -187 4 1437 1166 101 0 11 chr11 111729930 111730111 -10113745 + (TATG)n Simple_repeat Simple_repeat 1 179 0 4 1437 235 195 0 163 chr11 111730111 111730172 -10113684 + Lx9 LINE L1 7458 7516 -128 4 1437 576 62 0 0 chr11 111730218 111730299 -10113557 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 4 1437 288 70 0 0 chr11 111730302 111730345 -10113511 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1437 1462 263 76 29 chr11 111730737 111731222 -10112634 - MT2A LTR ERVL -10 523 16 4 1437 481 376 19 0 chr11 111731341 111731498 -10112358 + RSINE1 SINE B4 6 165 0 4 1437 23 33 0 0 chr11 111731907 111731937 -10111919 + AT_rich Low_complexity Low_complexity 1 30 0 4 1437 189 0 0 0 chr11 111733115 111733136 -10110720 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1437 337 150 12 24 chr11 111733245 111733327 -10110529 + (TATG)n Simple_repeat Simple_repeat 3 83 0 4 1437 349 330 0 8 chr11 111733769 111733888 -10109968 + (CATA)n Simple_repeat Simple_repeat 1 118 0 4 1437 1200 252 96 26 chr11 111733941 111734356 -10109500 + Lx2B LINE L1 6556 6999 -1 4 1437 240 35 0 0 chr11 111735090 111735119 -10108737 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1437 315 322 69 79 chr11 111735927 111736009 -10107847 + RMER30 DNA MER1_type 2 82 -120 4 1437 738 62 0 0 chr11 111736009 111736105 -10107751 + (CA)n Simple_repeat Simple_repeat 2 97 0 4 1437 315 322 69 79 chr11 111736105 111736224 -10107632 + RMER30 DNA MER1_type 83 201 -1 4 1437 231 36 0 0 chr11 111736738 111736766 -10107090 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 1437 1010 314 65 52 chr11 111736767 111737324 -10106532 - Lx9 LINE L1 -459 7185 6622 4 1437 189 0 0 0 chr11 111739029 111739050 -10104806 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1437 582 372 61 9 chr11 111739114 111739342 -10104514 - B4A SINE B4 -12 280 41 4 1437 471 87 0 0 chr11 111739505 111739574 -10104282 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1437 669 320 40 7 chr11 111739849 111740126 -10103730 + Lx8 LINE L1 7071 7356 -117 4 1437 940 256 222 0 chr11 111740450 111740758 -10103098 + RLTR30 LTR ERV1 3 379 0 4 1437 268 77 19 19 chr11 111740937 111740990 -10102866 + (TTA)n Simple_repeat Simple_repeat 2 54 0 4 1437 215 281 0 45 chr11 111741231 111741298 -10102558 + GA-rich Low_complexity Low_complexity 4 67 0 4 1437 233 320 40 40 chr11 111741505 111741606 -10102250 - MIR SINE MIR -85 123 23 4 1437 585 142 0 38 chr11 111742601 111742975 -10100881 + (TCTCTG)n Simple_repeat Simple_repeat 1 359 0 4 1437 813 247 52 55 chr11 111742984 111743275 -10100581 - B4 SINE B4 -2 290 1 4 1437 392 342 78 25 chr11 111743433 111743676 -10100180 + L1ME3B LINE L1 5968 6223 -17 4 1437 339 276 19 28 chr11 111743893 111744001 -10099855 - B4A SINE B4 -184 108 2 4 1437 210 157 0 89 chr11 111744430 111744542 -10099314 + (TCTCTG)n Simple_repeat Simple_repeat 1 102 0 4 1437 414 356 125 37 chr11 111744582 111744935 -10098921 - HAL1 LINE L1 -604 1903 1520 4 1437 1566 190 86 22 chr11 111745449 111745809 -10098047 + ORR1C2 LTR MaLR 1 383 -1 4 1437 447 341 90 37 chr11 111746072 111746340 -10097516 - B4A SINE B4 -9 283 2 4 1437 375 224 0 0 chr11 111746961 111747028 -10096828 + ID4 SINE ID 4 70 -13 4 1437 285 33 0 0 chr11 111747675 111747736 -10096120 + (TCTG)n Simple_repeat Simple_repeat 1 61 0 4 1437 1020 111 0 0 chr11 111747736 111747915 -10095941 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1437 502 284 83 64 chr11 111748048 111748409 -10095447 - L1MA8 LINE L1 -12 6279 5912 4 1437 300 265 0 0 chr11 111748446 111748544 -10095312 + GA-rich Low_complexity Low_complexity 2 99 0 4 1437 537 44 0 0 chr11 111749036 111749104 -10094752 + (TATG)n Simple_repeat Simple_repeat 3 70 0 4 1437 451 267 58 1 chr11 111749112 111749250 -10094606 - B4A SINE B4 -14 278 132 4 1437 351 0 0 0 chr11 111749577 111749616 -10094240 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1437 22 0 0 0 chr11 111749669 111749691 -10094165 + GC_rich Low_complexity Low_complexity 1 22 0 4 1437 5256 165 28 8 chr11 111749716 111751110 -10092746 - Lx5 LINE L1 -676 6374 4936 4 1437 477 223 16 0 chr11 111751727 111751977 -10091879 + (CA)n Simple_repeat Simple_repeat 1 254 0 4 1437 277 271 0 0 chr11 111752907 111752966 -10090890 + B3A SINE B2 1 59 -139 4 1437 651 252 0 0 chr11 111752987 111753110 -10090746 + B3A SINE B2 1 123 -75 4 1437 436 328 79 61 chr11 111753225 111753607 -10090249 - MLT1C LTR MaLR -19 448 41 4 1437 306 0 0 0 chr11 111754034 111754068 -10089788 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1437 721 322 73 29 chr11 111754088 111754334 -10089522 - B4A SINE B4 -18 274 18 4 1437 240 35 0 0 chr11 111754343 111754372 -10089484 + (TAAG)n Simple_repeat Simple_repeat 3 31 0 4 1437 1218 73 0 0 chr11 111754393 111754572 -10089284 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1437 329 315 53 20 chr11 111756186 111756338 -10087518 + MIRb SINE MIR 14 170 -98 4 1437 1243 204 77 7 chr11 111758816 111759102 -10084754 - Lx5 LINE L1 -44 7006 6701 4 1437 512 241 180 72 chr11 111759108 111759358 -10084498 + B4 SINE B4 3 279 -13 4 1437 23 0 0 0 chr11 111760844 111760867 -10082989 + AT_rich Low_complexity Low_complexity 1 23 0 5 1437 25 0 0 0 chr11 111762053 111762078 -10081778 + AT_rich Low_complexity Low_complexity 1 25 0 5 1437 405 304 7 52 chr11 111762295 111762448 -10081408 + MER58A DNA MER1_type 1 146 -78 5 1437 1733 86 0 34 chr11 111762592 111762857 -10080999 - L1Md_F2 LINE L1 -1 6581 6326 5 1437 290 75 0 0 chr11 111762857 111762897 -10080959 + L1_Mus1 LINE L1 6286 6325 -242 5 1437 459 284 0 33 chr11 111763303 111763423 -10080433 - PB1D10 SINE Alu 0 117 2 5 1437 636 291 0 7 chr11 111764178 111764330 -10079526 - RSINE1 SINE B4 -13 152 2 5 1437 1182 62 7 0 chr11 111764578 111764724 -10079132 + B1_Mus1 SINE Alu 2 148 0 5 1437 225 94 0 0 chr11 111764724 111764756 -10079100 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1437 322 234 19 0 chr11 111764755 111764862 -10078994 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 5 1437 530 306 0 47 chr11 111766135 111766327 -10077529 - B3A SINE B2 -15 183 1 5 1437 1138 190 71 26 chr11 111766432 111766716 -10077140 - RLTR20B3 LTR ERVK -273 278 4 5 1437 494 316 14 49 chr11 111766717 111766860 -10076996 + RSINE1 SINE B4 28 165 0 5 1437 728 244 73 19 chr11 111766998 111767203 -10076653 + B3 SINE B2 1 216 0 5 1437 206 225 0 0 chr11 111767419 111767459 -10076397 + CT-rich Low_complexity Low_complexity 4 43 0 5 1437 186 43 0 0 chr11 111768453 111768476 -10075380 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 5 1437 474 158 40 0 chr11 111768483 111768559 -10075297 - B1_Mur4 SINE Alu -19 131 53 5 1437 218 32 32 0 chr11 111768607 111768638 -10075218 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1437 491 355 64 75 chr11 111768956 111769221 -10074635 - B4 SINE B4 -1 291 30 5 1437 315 0 0 0 chr11 111769472 111769507 -10074349 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 5 1437 480 35 0 0 chr11 111769720 111769778 -10074078 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1437 1219 171 132 45 chr11 111770059 111770415 -10073441 - Lx9 LINE L1 -7 7637 7251 5 1437 451 262 103 0 chr11 111770445 111770552 -10073304 + ID_B1 SINE B4 100 217 -7 5 1437 887 78 14 14 chr11 111770689 111770833 -10073023 + (TTCTC)n Simple_repeat Simple_repeat 3 146 0 5 1437 562 160 16 8 chr11 111770833 111770959 -10072897 + CT-rich Low_complexity Low_complexity 3 129 0 5 1437 304 221 73 10 chr11 111771350 111771446 -10072410 + Tigger1 DNA MER2_type 95 196 -2222 5 1437 371 263 7 49 chr11 111771446 111771590 -10072266 - Lx6 LINE L1 -18 7442 7305 5 1437 450 0 0 0 chr11 111771609 111771659 -10072197 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1437 897 274 111 6 chr11 111771668 111771984 -10071872 - Lx6 LINE L1 -346 7114 6766 5 1437 3025 235 24 14 chr11 111771976 111773081 -10070775 - Lx6 LINE L1 -1000 6460 5326 5 1437 297 0 0 0 chr11 111773165 111773198 -10070658 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1437 2961 69 131 19 chr11 111773371 111773799 -10070057 + L1_Mus3 LINE L1 6162 6637 -1 5 1437 246 251 33 205 chr11 111773847 111774062 -10069794 + MTEa LTR MaLR 200 377 -2 5 1437 483 314 7 24 chr11 111774130 111774285 -10069571 + MER58B DNA MER1_type 158 306 -35 5 1437 243 245 0 0 chr11 111776309 111776358 -10067498 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1437 432 0 0 0 chr11 111776899 111776947 -10066909 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1437 37 0 0 0 chr11 111776976 111777013 -10066843 + AT_rich Low_complexity Low_complexity 1 37 0 5 1437 1190 254 72 6 chr11 111777146 111777467 -10066389 + ORR1D1 LTR MaLR 29 370 -4 5 1437 565 168 30 0 chr11 111777973 111778074 -10065782 + B3 SINE B2 4 107 -109 5 1437 355 313 170 27 chr11 111778074 111778196 -10065660 + B4A SINE B4 4 258 -34 5 1437 479 236 78 123 chr11 111778684 111778863 -10064993 + B3A SINE B2 18 198 0 5 1437 452 274 37 52 chr11 111778987 111779122 -10064734 - B3A SINE B2 -57 141 9 5 1437 1579 137 101 3 chr11 111780331 111780639 -10063217 - Lx2B LINE L1 -886 6114 5777 5 1437 5346 141 6 14 chr11 111780639 111781484 -10062372 + Lx2B LINE L1 6161 6998 -2 5 1437 418 347 20 7 chr11 111781540 111781688 -10062168 - RSINE1 SINE B4 -8 157 8 5 1437 507 60 0 0 chr11 111781946 111782013 -10061843 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1437 555 295 27 7 chr11 111783217 111783367 -10060489 + B3A SINE B2 1 153 -45 5 1437 459 0 0 0 chr11 111783389 111783440 -10060416 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1437 990 231 52 0 chr11 111783479 111783730 -10060126 + Lx9 LINE L1 7215 7478 -166 5 1437 281 131 0 16 chr11 111783858 111783920 -10059936 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1437 531 31 0 0 chr11 111783923 111783988 -10059868 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1437 511 299 49 79 chr11 111785002 111785205 -10058651 - B3A SINE B2 0 198 2 5 1437 550 73 21 0 chr11 111785313 111785409 -10058447 + L1Md_F3 LINE L1 6487 6584 0 5 1437 400 315 25 96 chr11 111785593 111785790 -10058066 + B3A SINE B2 15 197 -1 5 1437 24 0 0 0 chr11 111785809 111785833 -10058023 + AT_rich Low_complexity Low_complexity 1 24 0 5 1437 25 31 0 0 chr11 111785951 111785983 -10057873 + AT_rich Low_complexity Low_complexity 1 32 0 5 1437 1303 77 16 11 chr11 111786530 111786715 -10057141 - B2_Mm2 SINE B2 -8 187 2 5 1437 1488 124 104 8 chr11 111787004 111787255 -10056601 - Lx4A LINE L1 -4 7054 6780 5 1437 1076 139 58 5 chr11 111787255 111787443 -10056413 + Lx4A LINE L1 6611 6808 -250 5 1437 501 291 25 81 chr11 111788394 111788555 -10055301 + B3A SINE B2 35 186 -30 5 1437 206 250 44 0 chr11 111789048 111789116 -10054740 + CT-rich Low_complexity Low_complexity 2 72 0 5 1437 637 197 35 7 chr11 111789151 111789294 -10054562 - B1_Mur4 SINE Alu -2 148 2 5 1437 450 327 12 53 chr11 111789746 111789917 -10053939 + RSINE1 SINE B4 1 164 -1 5 1437 213 327 0 0 chr11 111790593 111790645 -10053211 + C-rich Low_complexity Low_complexity 5 56 0 5 1437 270 81 0 0 chr11 111791442 111791479 -10052377 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1437 236 207 8 97 chr11 111791489 111791623 -10052233 + Lx9 LINE L1 7523 7644 0 5 1437 1037 77 7 7 chr11 111791627 111791771 -10052085 + B1_Mus1 SINE Alu 5 148 0 5 1437 185 0 0 39 chr11 111791776 111791802 -10052054 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1437 933 210 61 5 chr11 111791865 111792061 -10051795 - B3 SINE B2 -9 207 1 5 1437 400 274 23 68 chr11 111792903 111793036 -10050820 - B4A SINE B4 -23 269 143 5 1437 426 264 24 0 chr11 111793791 111793916 -10049940 - L1_Mur3 LINE L1 -667 5213 5086 5 1437 568 244 85 0 chr11 111793915 111794116 -10049740 + Lx8 LINE L1 5694 5911 -1562 5 1437 996 150 11 50 chr11 111794306 111794488 -10049368 + URR1A DNA MER1_type 52 226 0 5 1437 333 0 0 0 chr11 111794599 111794636 -10049220 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1437 1889 330 57 23 chr11 111794691 111795690 -10048166 + Lx8 LINE L1 6246 7278 -195 5 1437 615 27 0 0 chr11 111795745 111795818 -10048038 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 1437 306 0 0 0 chr11 111796057 111796091 -10047765 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1437 235 282 22 56 chr11 111796734 111796824 -10047032 + RLTR21 LTR ERVK 102 188 -1384 5 1437 554 344 94 0 chr11 111797218 111797410 -10046446 - B3 SINE B2 -6 210 1 5 1437 732 316 21 18 chr11 111797975 111798259 -10045597 + Lx8 LINE L1 6834 7118 -355 5 1437 661 296 79 46 chr11 111801317 111801558 -10042298 + B4 SINE B4 16 264 -28 5 1437 396 0 0 0 chr11 111801561 111801605 -10042251 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1437 570 105 29 0 chr11 111801787 111801892 -10041964 + (GA)n Simple_repeat Simple_repeat 2 109 0 5 1437 1027 112 18 0 chr11 111801894 111802063 -10041793 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 5 1437 278 361 27 7 chr11 111802701 111802849 -10041007 - MIR SINE MIR -2 260 110 5 1437 359 272 138 4 chr11 111802913 111803065 -10040791 + L1M5 LINE L1 5374 5540 -793 5 1437 885 274 101 41 chr11 111803124 111803490 -10040366 - Lx8 LINE L1 -166 7307 6920 5 1437 2434 115 68 10 chr11 111803924 111804321 -10039535 - Lx2 LINE L1 0 6997 6578 5 1438 348 372 67 7 chr11 111804644 111804793 -10039063 + RSINE1 SINE B4 4 161 -4 5 1438 254 242 19 95 chr11 111804830 111804935 -10038921 + RMER12 LTR ERVK 750 846 -476 5 1438 21 0 0 0 chr11 111805076 111805097 -10038759 + AT_rich Low_complexity Low_complexity 1 21 0 5 1438 180 0 0 0 chr11 111806170 111806190 -10037666 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1438 803 169 11 11 chr11 111806794 111806973 -10036883 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1438 183 277 0 21 chr11 111807306 111807354 -10036502 - MIR SINE MIR -196 66 20 5 1438 23 33 0 0 chr11 111808248 111808278 -10035578 + AT_rich Low_complexity Low_complexity 1 30 0 5 1438 432 253 30 158 chr11 111808494 111808696 -10035160 - B3A SINE B2 0 198 23 5 1438 180 0 0 0 chr11 111809263 111809283 -10034573 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1438 494 282 43 49 chr11 111809756 111809920 -10033936 - B3A SINE B2 -8 190 28 5 1438 438 127 0 0 chr11 111810050 111810121 -10033735 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1438 542 15 0 15 chr11 111811233 111811301 -10032555 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1438 537 295 138 8 chr11 111811758 111812004 -10031852 + B4A SINE B4 3 280 -12 5 1438 2861 47 94 3 chr11 111812200 111812563 -10031293 + MTA_Mm LTR MaLR 1 396 0 5 1438 2284 121 3 0 chr11 111813642 111813980 -10029876 + Lx3_Mus LINE L1 6671 7009 0 5 1438 363 241 0 33 chr11 111814300 111814390 -10029466 + B4 SINE B4 3 89 -203 5 1438 430 287 22 22 chr11 111814650 111814789 -10029067 - L3b LINE CR1 -326 156 18 5 1438 192 231 187 28 chr11 111814978 111815085 -10028771 + L3 LINE CR1 148 271 -4218 6 1438 205 175 46 31 chr11 111815948 111816013 -10027843 + (TAAA)n Simple_repeat Simple_repeat 2 67 0 6 1438 286 320 0 10 chr11 111816597 111816698 -10027158 + GA-rich Low_complexity Low_complexity 2 101 0 6 1438 2911 73 23 5 chr11 111816885 111817284 -10026572 - MTB_Mm LTR MaLR 0 407 2 6 1438 6088 146 83 21 chr11 111817286 111818459 -10025397 - MTB_Mm-int LTR MaLR -1 1257 12 6 1438 2992 73 20 5 chr11 111818467 111818868 -10024988 - MTB_Mm LTR MaLR 0 407 1 6 1438 23 54 0 0 chr11 111820493 111820530 -10023326 + AT_rich Low_complexity Low_complexity 1 37 0 6 1438 379 244 50 0 chr11 111820727 111820846 -10023010 - Lx7 LINE L1 0 7696 7572 6 1438 489 80 0 0 chr11 111820938 111821013 -10022843 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1438 704 256 61 0 chr11 111821020 111821184 -10022672 + B3A SINE B2 9 182 -16 6 1438 216 97 0 0 chr11 111821199 111821230 -10022626 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1438 597 198 0 0 chr11 111821865 111821991 -10021865 + (TA)n Simple_repeat Simple_repeat 2 127 0 6 1438 342 45 0 0 chr11 111823157 111823201 -10020655 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1438 189 0 0 0 chr11 111823537 111823558 -10020298 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1438 28 71 0 0 chr11 111823991 111824047 -10019809 + AT_rich Low_complexity Low_complexity 1 56 0 6 1438 270 56 0 0 chr11 111824841 111824877 -10018979 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 6 1438 339 25 0 0 chr11 111825789 111825829 -10018027 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1438 285 29 0 0 chr11 111825829 111825862 -10017994 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1438 865 298 107 11 chr11 111826447 111826708 -10017148 + B4A SINE B4 1 286 -6 6 1438 765 76 0 0 chr11 111826713 111826818 -10017038 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 1438 680 138 192 7 chr11 111827048 111827194 -10016662 - ORR1B1 LTR MaLR -153 241 69 6 1438 255 204 0 0 chr11 111827208 111827262 -10016594 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1438 229 237 51 0 chr11 111827266 111827325 -10016531 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 6 1438 246 62 0 0 chr11 111827781 111827813 -10016043 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1438 300 212 141 0 chr11 111828027 111828112 -10015744 - PB1D10 SINE Alu -19 98 2 6 1438 539 251 142 2 chr11 111828504 111828666 -10015190 - B3 SINE B2 -22 173 1 6 1438 273 197 0 0 chr11 111830260 111830321 -10013535 + GA-rich Low_complexity Low_complexity 2 62 0 6 1438 871 251 30 0 chr11 111830579 111830778 -10013078 + B3 SINE B2 1 205 -11 6 1438 504 0 0 0 chr11 111830854 111830910 -10012946 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1438 371 299 11 0 chr11 111830933 111831020 -10012836 - RSINE1 SINE B4 -49 116 29 6 1438 313 350 102 15 chr11 111832909 111833173 -10010683 - Lx9 LINE L1 -176 7468 7182 6 1438 450 261 28 28 chr11 111833173 111833315 -10010541 - Lx9 LINE L1 -596 7048 6907 6 1438 432 353 42 42 chr11 111834915 111835128 -10008728 + MER20 DNA MER1_type 6 218 -1 6 1438 426 39 0 0 chr11 111835277 111835329 -10008527 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 6 1438 1180 273 98 19 chr11 111835872 111836249 -10007607 + MTD LTR MaLR 13 419 0 6 1438 441 0 0 0 chr11 111836665 111836714 -10007142 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1438 261 0 0 0 chr11 111838440 111838469 -10005387 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1438 671 355 55 0 chr11 111838594 111838850 -10005006 - B4A SINE B4 -2 290 21 6 1438 897 284 145 12 chr11 111839958 111840282 -10003574 + MTEb LTR MaLR 1 367 -12 6 1438 367 209 193 37 chr11 111840289 111840398 -10003458 + MTEb-int LTR MaLR 1 126 -1454 6 1438 923 71 0 38 chr11 111840417 111840548 -10003308 + B1_Mm SINE Alu 2 127 -20 6 1438 2122 304 150 59 chr11 111840561 111841560 -10002296 + MTEb-int LTR MaLR 114 1203 -377 6 1438 495 107 0 0 chr11 111841560 111841635 -10002221 + (TATG)n Simple_repeat Simple_repeat 2 76 0 6 1438 2033 307 57 12 chr11 111842065 111842943 -10000913 + Lx8 LINE L1 6554 7470 -3 6 1438 534 329 166 39 chr11 111844212 111844471 -9999385 + B4 SINE B4 1 292 0 6 1438 534 43 0 0 chr11 111844505 111844574 -9999282 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1438 541 276 44 13 chr11 111845690 111845848 -9998008 - B3 SINE B2 0 216 54 6 1438 457 355 16 32 chr11 111846160 111846349 -9997507 + B4A SINE B4 13 198 -94 6 1438 356 387 0 40 chr11 111846327 111846451 -9997405 + B3A SINE B2 42 160 -38 6 1438 315 0 0 0 chr11 111846456 111846491 -9997365 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1438 221 368 0 0 chr11 111846844 111846920 -9996936 + ID4 SINE ID 4 79 -4 6 1438 465 110 0 0 chr11 111846929 111847002 -9996854 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1438 454 306 50 61 chr11 111847072 111847270 -9996586 - B3A SINE B2 -1 197 2 6 1438 378 307 11 0 chr11 111847484 111847572 -9996284 - MER81 DNA AcHobo 0 114 26 6 1438 2957 151 9 37 chr11 111847696 111848238 -9995618 - RLTR11A2 LTR ERVK 0 527 1 6 1438 277 355 100 28 chr11 111848509 111848758 -9995098 + B4A SINE B4 8 274 -18 6 1438 306 87 0 0 chr11 111848776 111848822 -9995034 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1438 968 133 0 6 chr11 111849941 111850122 -9993734 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1438 238 250 0 0 chr11 111850122 111850182 -9993674 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1438 330 183 47 12 chr11 111850183 111850354 -9993502 + (TCTG)n Simple_repeat Simple_repeat 2 178 0 6 1438 210 71 0 0 chr11 111851766 111851794 -9992062 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1438 283 359 93 23 chr11 111851816 111852030 -9991826 - B4A SINE B4 -16 276 48 6 1438 257 0 30 0 chr11 111852969 111853002 -9990854 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1438 189 0 0 0 chr11 111853768 111853789 -9990067 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1438 610 269 153 16 chr11 111854194 111854443 -9989413 + B4 SINE B4 1 283 -9 6 1438 878 128 7 0 chr11 111854457 111854606 -9989250 + (TC)n Simple_repeat Simple_repeat 1 150 0 6 1438 404 352 30 30 chr11 111855102 111855406 -9988450 + Lx8 LINE L1 6924 7227 -246 6 1438 614 263 53 112 chr11 111855460 111855648 -9988208 + B3A SINE B2 1 177 -18 6 1438 382 331 7 22 chr11 111855658 111855797 -9988059 - MTE2b LTR MaLR -237 142 6 6 1438 290 273 41 8 chr11 111856655 111856777 -9987079 - Lx8 LINE L1 -453 7020 6895 6 1438 360 0 0 0 chr11 111856827 111856867 -9986989 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1438 414 0 0 0 chr11 111858876 111858922 -9984934 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 6 1438 344 301 99 92 chr11 111858946 111859250 -9984606 - Lx8 LINE L1 -206 7267 6962 6 1438 318 250 79 11 chr11 111860447 111860536 -9983320 - Lx9 LINE L1 -1128 6516 6422 6 1438 180 0 0 0 chr11 111860893 111860913 -9982943 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1438 330 87 0 0 chr11 111861485 111861531 -9982325 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1438 351 252 78 39 chr11 111862031 111862159 -9981697 + L1MC1 LINE L1 6182 6314 -19 6 1438 246 278 0 0 chr11 111862299 111862353 -9981503 + polypurine Low_complexity Low_complexity 4 57 0 6 1438 908 296 69 36 chr11 111862372 111862677 -9981179 + MTEa LTR MaLR 6 320 -59 6 1438 22 35 0 0 chr11 111862684 111862713 -9981143 + AT_rich Low_complexity Low_complexity 1 29 0 6 1438 213 118 29 0 chr11 111863626 111863660 -9980196 - MIRm SINE MIR -17 259 225 6 1438 24 32 0 0 chr11 111863962 111863993 -9979863 + AT_rich Low_complexity Low_complexity 1 31 0 6 1438 415 113 50 34 chr11 111864340 111864459 -9979397 + (CAGAGA)n Simple_repeat Simple_repeat 4 124 0 6 1438 450 0 0 0 chr11 111865542 111865592 -9978264 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1438 444 118 0 0 chr11 111865712 111865780 -9978076 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1438 423 0 0 0 chr11 111866054 111866101 -9977755 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1438 1102 67 0 0 chr11 111866115 111866249 -9977607 + B1_Mus2 SINE Alu 5 138 -9 6 1438 3427 54 28 5 chr11 111866522 111866948 -9976908 - RLTR10C LTR ERVK 0 436 1 6 1438 328 161 0 0 chr11 111867357 111867413 -9976443 - L1MA4 LINE L1 -370 5930 5875 6 1438 277 234 143 46 chr11 111867414 111867589 -9976267 + L1MA4 LINE L1 5981 6173 -127 6 1438 348 24 0 0 chr11 111867728 111867769 -9976087 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1438 192 77 0 0 chr11 111868577 111868603 -9975253 + (CCTAG)n Simple_repeat Simple_repeat 3 28 0 6 1438 333 274 10 31 chr11 111868867 111868965 -9974891 - PB1D10 SINE Alu -3 114 19 6 1438 264 402 9 0 chr11 111869929 111870036 -9973820 + ID_B1 SINE B4 113 220 -4 6 1438 915 58 0 8 chr11 111870043 111870164 -9973692 + B1_Mus1 SINE Alu 29 148 0 6 1438 852 61 0 0 chr11 111870166 111870281 -9973575 + (GGAAA)n Simple_repeat Simple_repeat 3 117 0 6 1438 857 294 62 25 chr11 111870283 111870527 -9973329 + B4A SINE B4 5 257 -35 6 1438 687 12 0 0 chr11 111870549 111870629 -9973227 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 1438 217 227 0 0 chr11 111870658 111870702 -9973154 + GA-rich Low_complexity Low_complexity 2 45 0 6 1438 384 266 119 14 chr11 111871359 111871473 -9972383 - B1F SINE Alu -37 112 2 6 1438 435 333 117 51 chr11 111872057 111872253 -9971603 - B4 SINE B4 0 292 84 6 1438 37931 30 0 6 chr11 111872273 111878413 -9965443 - L1Md_T LINE L1 0 6582 488 6 1438 779 191 3 27 chr11 111878866 111879205 -9964651 + GA-rich Low_complexity Low_complexity 1 330 0 6 1438 315 0 0 0 chr11 111879985 111880020 -9963836 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1438 189 271 58 23 chr11 111881318 111881405 -9962451 + MIR SINE MIR 59 148 -114 6 1438 186 43 0 0 chr11 111882438 111882461 -9961395 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1438 732 221 107 38 chr11 111882581 111882844 -9961012 - Lx7 LINE L1 0 7696 7416 7 1438 224 340 52 39 chr11 111883324 111883477 -9960379 + MIR SINE MIR 103 257 -5 7 1438 392 292 0 58 chr11 111883501 111883621 -9960235 + B4A SINE B4 1 113 -179 7 1438 375 23 0 0 chr11 111883657 111883701 -9960155 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 1438 1119 127 2 2 chr11 111883747 111884212 -9959644 + (CA)n Simple_repeat Simple_repeat 1 465 0 7 1438 256 279 21 118 chr11 111886454 111886641 -9957215 - CYRA11_Mm Unknown Y-chromosome -203 414 246 7 1438 1057 192 0 50 chr11 111886490 111886709 -9957147 + URR1A DNA MER1_type 9 216 -10 7 1438 757 311 43 33 chr11 111887378 111887799 -9956057 + Lx9 LINE L1 6906 7449 -195 7 1438 288 0 0 0 chr11 111887799 111887831 -9956025 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1438 596 340 70 31 chr11 111887831 111887949 -9955907 + Lx9 LINE L1 7334 7466 -7 7 1438 242 229 67 84 chr11 111888476 111888595 -9955261 + LTR16E1 LTR ERVL 395 511 -27 7 1438 740 269 6 18 chr11 111888601 111888771 -9955085 + MTE2b LTR MaLR 1 168 -211 7 1438 780 253 34 121 chr11 111889838 111890045 -9953811 - B3 SINE B2 -1 194 6 7 1438 3502 167 19 34 chr11 111890078 111890779 -9953077 - RMER6C LTR ERVK 0 690 1 7 1438 703 312 24 28 chr11 111891146 111891433 -9952423 + B4A SINE B4 3 288 -4 7 1438 572 297 84 33 chr11 111891900 111892175 -9951681 + RMER15 LTR ERVL 272 560 -15 7 1438 475 256 22 15 chr11 111892371 111892506 -9951350 + Charlie5 DNA MER1_type 2238 2373 -251 7 1438 410 263 76 75 chr11 111893587 111893796 -9950060 + MER58B DNA MER1_type 5 210 -176 7 1438 252 86 0 0 chr11 111893982 111894017 -9949839 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 7 1438 366 32 31 31 chr11 111895183 111895248 -9948608 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 7 1438 754 284 5 14 chr11 111895428 111895646 -9948210 + B3 SINE B2 1 216 0 7 1438 310 303 0 73 chr11 111895694 111895790 -9948066 + B4A SINE B4 203 291 -1 7 1438 450 0 0 0 chr11 111895792 111895842 -9948014 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1438 522 0 0 0 chr11 111895938 111895996 -9947860 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 1438 662 301 114 43 chr11 111897399 111898003 -9945853 - L1MC3 LINE L1 -232 7553 6907 7 1438 1104 120 144 0 chr11 111898080 111898288 -9945568 - L1_Mus3 LINE L1 0 6638 6401 7 1438 3644 94 0 2 chr11 111898282 111898806 -9945050 + L1_Mus3 LINE L1 5861 6383 -255 7 1438 847 298 12 8 chr11 111900748 111900995 -9942861 - MER121 Unknown Unknown -154 258 11 7 1438 804 286 130 54 chr11 111901644 111902343 -9941513 - Lx9 LINE L1 -1030 6614 5863 7 1438 534 237 38 9 chr11 111902343 111902556 -9941300 + Lx9 LINE L1 7416 7634 -10 7 1438 242 56 28 0 chr11 111902597 111902633 -9941223 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1438 180 111 0 0 chr11 111902633 111902660 -9941196 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1438 986 281 11 42 chr11 111902666 111902719 -9941137 - B4 SINE B4 -18 274 225 7 1438 3140 36 28 8 chr11 111902719 111903107 -9940749 - MTA_Mm LTR MaLR 0 396 1 7 1438 986 281 11 42 chr11 111903107 111903317 -9940539 - B4 SINE B4 -68 224 19 7 1438 740 98 109 36 chr11 111903580 111903718 -9940138 + B1_Mus1 SINE Alu 1 148 0 7 1438 310 53 17 35 chr11 111903726 111903784 -9940072 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 7 1438 487 351 0 0 chr11 111903931 111904082 -9939774 - RSINE1 SINE B4 -12 153 3 7 1438 330 26 0 0 chr11 111904512 111904551 -9939305 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1438 509 286 264 13 chr11 111905144 111905371 -9938485 - B4A SINE B4 -8 284 1 7 1438 392 0 21 0 chr11 111906041 111906089 -9937767 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1438 666 321 12 0 chr11 111906822 111907062 -9936794 - Lx6 LINE L1 -819 6641 6399 7 1438 461 239 0 71 chr11 111907073 111907199 -9936657 + Lx6 LINE L1 6754 6870 -590 7 1438 476 122 40 16 chr11 111907199 111907324 -9936532 + (TA)n Simple_repeat Simple_repeat 2 129 0 7 1438 276 77 0 0 chr11 111907347 111907386 -9936470 + (TATG)n Simple_repeat Simple_repeat 1 39 0 7 1438 587 223 286 4 chr11 111907399 111907633 -9936223 + Lx6 LINE L1 7146 7445 -15 7 1438 928 105 13 0 chr11 111907750 111907902 -9935954 + (CATA)n Simple_repeat Simple_repeat 2 155 0 7 1438 289 320 51 32 chr11 111908298 111908456 -9935400 + Lx8 LINE L1 7215 7375 -98 7 1438 381 43 0 0 chr11 111908537 111908584 -9935272 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1438 468 212 176 69 chr11 111908587 111908820 -9935036 - RMER15 LTR ERVL -44 531 274 7 1438 3520 53 11 9 chr11 111909233 111909692 -9934164 + Lx3_Mus LINE L1 6542 7001 -8 7 1438 306 338 82 86 chr11 111909838 111910058 -9933798 - B4A SINE B4 -27 265 47 7 1438 2472 183 72 25 chr11 111910636 111911068 -9932788 + RLTR20A LTR ERVK 1 439 -102 7 1438 405 0 0 0 chr11 111911068 111911113 -9932743 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1438 2472 183 72 25 chr11 111911113 111911195 -9932661 + RLTR20A LTR ERVK 440 538 -3 7 1438 220 216 0 0 chr11 111911277 111911328 -9932528 + A-rich Low_complexity Low_complexity 1 51 0 7 1438 22 35 0 0 chr11 111912089 111912118 -9931738 + AT_rich Low_complexity Low_complexity 1 29 0 7 1438 350 209 160 35 chr11 111912293 111912437 -9931419 + HAL1-3A_ME LINE L1 2284 2445 -413 7 1438 229 247 11 45 chr11 111912454 111912543 -9931313 + GA-rich Low_complexity Low_complexity 3 88 0 7 1438 303 297 0 71 chr11 111912550 111912677 -9931179 + HAL1-3A_ME LINE L1 2673 2790 -68 7 1438 307 292 126 42 chr11 111912661 111912804 -9931052 + HAL1-3A_ME LINE L1 2284 2438 -420 7 1438 333 0 0 0 chr11 111914222 111914259 -9929597 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1438 408 360 43 23 chr11 111914421 111914639 -9929217 + MLT1H1 LTR MaLR 28 275 -320 7 1438 26 0 0 0 chr11 111914662 111914688 -9929168 + AT_rich Low_complexity Low_complexity 1 26 0 7 1438 230 262 0 0 chr11 111914822 111914883 -9928973 - Lx9 LINE L1 -223 7421 7361 7 1438 507 289 28 7 chr11 111915029 111915172 -9928684 + B1_Mur2 SINE Alu 4 149 0 7 1438 984 31 0 58 chr11 111915436 111915575 -9928281 - B1_Mm SINE Alu 0 147 17 7 1438 402 280 58 79 chr11 111915456 111915646 -9928210 - B4A SINE B4 -77 215 30 7 1438 1384 89 16 0 chr11 111915733 111915923 -9927933 - B2_Mm2 SINE B2 -2 193 1 7 1438 504 150 0 0 chr11 111916594 111916707 -9927149 + (TCTG)n Simple_repeat Simple_repeat 2 114 0 7 1438 328 26 0 0 chr11 111916717 111916755 -9927101 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1438 477 0 0 0 chr11 111916755 111916808 -9927048 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1438 1187 187 9 9 chr11 111917830 111918056 -9925800 + URR1A DNA MER1_type 1 226 0 7 1438 970 225 50 0 chr11 111918694 111918894 -9924962 + B3 SINE B2 2 211 -5 7 1438 2272 82 3 59 chr11 111918921 111919259 -9924597 - ORR1A2 LTR MaLR -8 319 1 7 1438 831 112 0 0 chr11 111919900 111920025 -9923831 + (TA)n Simple_repeat Simple_repeat 2 126 0 7 1438 772 137 0 8 chr11 111920241 111920359 -9923497 + MTC LTR MaLR 305 421 0 7 1438 711 206 147 31 chr11 111920503 111920694 -9923162 + B3 SINE B2 4 216 0 7 1438 189 0 0 0 chr11 111920800 111920821 -9923035 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1438 231 312 75 11 chr11 111921956 111922050 -9921806 + MER45R DNA Tip100 1 100 -1481 7 1438 6099 128 30 12 chr11 111923019 111923992 -9919864 + Lx2B LINE L1 6010 6999 -1 7 1438 1072 144 83 37 chr11 111924386 111924602 -9919254 - URR1A DNA MER1_type 0 226 1 7 1438 1034 210 21 0 chr11 111924751 111924937 -9918919 + B3 SINE B2 4 193 -23 7 1438 333 0 0 0 chr11 111925502 111925539 -9918317 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1438 1008 98 0 0 chr11 111925539 111925711 -9918145 + (GA)n Simple_repeat Simple_repeat 2 174 0 7 1438 977 308 34 53 chr11 111925893 111926398 -9917458 + Lx8 LINE L1 6970 7464 -9 7 1438 219 302 83 19 chr11 111926513 111926621 -9917235 + MER5A DNA MER1_type 52 166 -23 7 1438 21 0 0 0 chr11 111926833 111926854 -9917002 + AT_rich Low_complexity Low_complexity 1 21 0 7 1438 960 85 0 0 chr11 111926854 111926983 -9916873 - B1_Mus1 SINE Alu -2 146 18 7 1438 431 228 41 141 chr11 111926995 111927215 -9916641 - B3A SINE B2 0 198 1 7 1438 259 326 0 34 chr11 111927219 111927308 -9916548 - L2a LINE L2 -1 3425 3340 7 1438 1357 234 32 0 chr11 111927316 111927745 -9916111 - L1MD LINE L1 -487 5677 5237 7 1438 374 287 79 29 chr11 111927745 111927885 -9915971 + MLT1F2 LTR MaLR 1 147 -413 7 1438 754 262 36 15 chr11 111928589 111928805 -9915051 - B3A SINE B2 -1 215 2 7 1438 551 288 95 76 chr11 111929393 111929697 -9914159 - ORR1E LTR MaLR 0 359 50 7 1438 405 0 0 0 chr11 111930489 111930534 -9913322 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1438 396 0 0 0 chr11 111930629 111930673 -9913183 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1438 723 12 0 0 chr11 111930673 111930756 -9913100 + (GA)n Simple_repeat Simple_repeat 2 85 0 7 1438 279 21 20 40 chr11 111931750 111931800 -9912056 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 7 1438 1140 68 0 39 chr11 111931810 111931963 -9911893 - B1_Mus1 SINE Alu 0 148 2 7 1438 412 250 10 10 chr11 111931968 111932069 -9911787 - B3 SINE B2 -112 104 4 7 1438 463 307 28 35 chr11 111932410 111932555 -9911301 - B4A SINE B4 -148 144 1 7 1438 815 243 60 44 chr11 111933458 111933708 -9910148 + Lx5 LINE L1 6782 7035 -15 7 1438 303 93 0 0 chr11 111933709 111933752 -9910104 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 7 1438 441 294 16 11 chr11 111933768 111933922 -9909934 - B3A SINE B2 -26 190 40 7 1438 1906 221 54 28 chr11 111934155 111934621 -9909235 + RLTR20A2 LTR ERVK 1 478 -100 7 1438 237 83 0 0 chr11 111934621 111934657 -9909199 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1439 275 372 57 21 chr11 111935835 111935975 -9907881 + MLT1A0 LTR MaLR 46 190 -175 8 1439 308 260 157 51 chr11 111936063 111936219 -9907637 + B3A SINE B2 2 181 -17 8 1439 768 108 0 0 chr11 111936219 111936358 -9907498 + (CAGAGA)n Simple_repeat Simple_repeat 6 144 0 8 1439 308 260 157 51 chr11 111936358 111936379 -9907477 + B3A SINE B2 182 197 -1 8 1439 201 74 0 0 chr11 111936382 111936409 -9907447 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 8 1439 560 285 67 5 chr11 111937029 111937237 -9906619 - L1MC1 LINE L1 -60 6273 6053 8 1439 259 197 28 35 chr11 111937516 111937658 -9906198 + CT-rich Low_complexity Low_complexity 1 141 0 8 1439 322 331 88 40 chr11 111937658 111937806 -9906050 - HAL1-3A_ME LINE L1 -419 2439 2285 8 1439 374 346 143 25 chr11 111937879 111938410 -9905446 + L2b LINE L2 2137 2730 -689 8 1439 451 342 17 0 chr11 111938793 111938913 -9904943 - RSINE1 SINE B4 -43 122 1 8 1439 321 47 0 0 chr11 111938919 111938962 -9904894 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 8 1439 1181 73 18 21 chr11 111938994 111939325 -9904531 + (TAGA)n Simple_repeat Simple_repeat 1 329 0 8 1439 318 330 9 19 chr11 111939669 111939777 -9904079 + PB1D10 SINE Alu 1 107 -10 8 1439 293 312 0 59 chr11 111940385 111940487 -9903369 + L2b LINE L2 3276 3371 -4 8 1439 365 236 9 9 chr11 111940740 111940876 -9902980 - L1MB3 LINE L1 -322 5861 5729 8 1439 502 353 63 37 chr11 111940921 111941271 -9902585 + ORR1E LTR MaLR 1 359 0 8 1439 549 294 37 16 chr11 111941622 111941812 -9902044 + B3 SINE B2 5 198 -18 8 1439 444 128 0 0 chr11 111942057 111942135 -9901721 + (CA)n Simple_repeat Simple_repeat 1 78 0 8 1439 527 238 0 7 chr11 111943931 111944083 -9899773 + (TATATG)n Simple_repeat Simple_repeat 5 155 0 8 1439 258 132 0 0 chr11 111944338 111944391 -9899465 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 8 1439 21 36 0 0 chr11 111944864 111944892 -9898964 + AT_rich Low_complexity Low_complexity 1 28 0 8 1439 369 0 0 0 chr11 111945513 111945554 -9898302 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1439 25 51 0 0 chr11 111945865 111945904 -9897952 + AT_rich Low_complexity Low_complexity 1 39 0 8 1439 441 180 0 0 chr11 111946537 111946626 -9897230 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 1439 25 0 0 0 chr11 111946970 111946995 -9896861 + AT_rich Low_complexity Low_complexity 1 25 0 8 1439 182 362 85 0 chr11 111947231 111947372 -9896484 + L2 LINE L2 1973 2125 -1294 8 1439 620 295 94 27 chr11 111947508 111947731 -9896125 - B4A SINE B4 -41 251 14 8 1439 404 277 41 41 chr11 111948302 111948449 -9895407 - B4 SINE B4 -145 147 1 8 1439 180 97 0 0 chr11 111948799 111948830 -9895026 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1439 1248 55 0 14 chr11 111948847 111948994 -9894862 - B1_Mm SINE Alu -2 145 1 8 1439 2270 227 18 65 chr11 111949019 111949590 -9894266 + RMER15 LTR ERVL 27 570 -5 8 1439 301 333 0 9 chr11 111950029 111950144 -9893712 + GA-rich Low_complexity Low_complexity 4 117 0 8 1439 595 164 17 126 chr11 111950156 111950394 -9893462 + Lx9 LINE L1 7432 7643 -1 8 1439 269 307 13 0 chr11 111951874 111951949 -9891907 + ID4 SINE ID 5 80 -3 8 1439 298 223 126 72 chr11 111952343 111952454 -9891402 - ID_B1 SINE B4 -10 214 98 8 1439 331 306 7 34 chr11 111952575 111952724 -9891132 + CT-rich Low_complexity Low_complexity 1 145 0 8 1439 184 100 24 24 chr11 111952730 111952771 -9891085 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 8 1439 279 353 24 85 chr11 111954028 111954192 -9889664 - B4A SINE B4 -119 173 20 8 1439 587 318 15 20 chr11 111954248 111954383 -9889473 - Lx8 LINE L1 -188 7285 7151 8 1439 1275 249 78 23 chr11 111954383 111954778 -9889078 + MTD LTR MaLR 3 419 0 8 1439 587 318 15 20 chr11 111954778 111954844 -9889012 - Lx8 LINE L1 -323 7150 7085 8 1439 681 13 0 0 chr11 111954948 111955026 -9888830 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 8 1439 964 151 6 6 chr11 111955043 111955223 -9888633 + GA-rich Low_complexity Low_complexity 1 180 0 8 1439 312 91 0 0 chr11 111955725 111955769 -9888087 + (TAA)n Simple_repeat Simple_repeat 2 45 0 8 1439 640 314 34 17 chr11 111955812 111955987 -9887869 + ID_B1 SINE B4 29 206 -18 8 1439 423 0 0 0 chr11 111957523 111957570 -9886286 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1439 282 56 0 0 chr11 111957729 111957765 -9886091 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1439 321 109 0 0 chr11 111957766 111957821 -9886035 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1439 1393 34 6 6 chr11 111957887 111958067 -9885789 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1439 799 299 88 29 chr11 111958718 111959025 -9884831 - Lx7 LINE L1 -395 7301 6977 8 1439 646 253 100 12 chr11 111959102 111959262 -9884594 - B3A SINE B2 -24 174 1 8 1439 282 279 58 35 chr11 111959433 111959621 -9884235 - MLT1L LTR MaLR -8 587 386 8 1439 1434 152 9 0 chr11 111959884 111960108 -9883748 + URR1A DNA MER1_type 1 226 0 8 1439 201 39 0 0 chr11 111960318 111960344 -9883512 + (G)n Simple_repeat Simple_repeat 1 26 0 8 1439 2001 294 84 26 chr11 111960707 111961527 -9882329 + Lx8 LINE L1 6603 7470 -3 8 1439 435 341 0 0 chr11 111961842 111962018 -9881838 + (TG)n Simple_repeat Simple_repeat 1 176 0 8 1439 480 73 37 0 chr11 111962138 111962220 -9881636 + (TC)n Simple_repeat Simple_repeat 1 85 0 8 1439 300 262 96 108 chr11 111962998 111963165 -9880691 + MT2B LTR ERVL 93 257 -344 8 1439 852 152 7 28 chr11 111963061 111963203 -9880653 + B1_Mur4 SINE Alu 6 144 -6 8 1439 1019 136 17 0 chr11 111963215 111963392 -9880464 + GA-rich Low_complexity Low_complexity 1 180 0 8 1439 1326 83 0 5 chr11 111963392 111963608 -9880248 + (GAA)n Simple_repeat Simple_repeat 1 215 0 8 1439 218 171 95 24 chr11 111963642 111963684 -9880172 + B4 SINE B4 48 92 -200 8 1439 248 254 104 0 chr11 111963766 111963833 -9880023 + B4 SINE B4 201 274 -18 8 1439 480 35 0 0 chr11 111963874 111963932 -9879924 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1439 185 343 125 12 chr11 111963961 111964129 -9879727 + MIR SINE MIR 67 253 -9 8 1439 21 0 0 0 chr11 111964370 111964391 -9879465 + AT_rich Low_complexity Low_complexity 1 21 0 8 1439 352 182 102 16 chr11 111964584 111964712 -9879144 + Lx9 LINE L1 7506 7644 0 8 1439 299 315 76 97 chr11 111964736 111964880 -9878976 + MER20 DNA MER1_type 76 216 -3 8 1439 229 161 18 18 chr11 111965015 111965072 -9878784 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1439 485 168 25 19 chr11 111965083 111965241 -9878615 + (TG)n Simple_repeat Simple_repeat 1 159 0 8 1439 268 340 0 9 chr11 111965454 111965561 -9878295 - L1M5 LINE L1 -558 5886 5781 8 1439 762 295 4 63 chr11 111965869 111966108 -9877748 + B4A SINE B4 9 233 -59 8 1439 432 113 0 0 chr11 111966108 111966170 -9877686 - L1_Mm LINE L1 -1170 4713 4652 8 1439 353 75 19 0 chr11 111966262 111966315 -9877541 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1439 933 331 46 41 chr11 111966704 111967142 -9876714 - Tigger7 DNA MER2_type -2045 446 7 8 1439 385 268 10 30 chr11 111967466 111967566 -9876290 + B4A SINE B4 167 264 -28 8 1439 213 94 0 0 chr11 111967657 111967689 -9876167 + (ATG)n Simple_repeat Simple_repeat 3 34 0 8 1439 423 0 0 0 chr11 111968519 111968566 -9875290 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1439 360 200 0 0 chr11 111969421 111969511 -9874345 + GA-rich Low_complexity Low_complexity 3 92 0 8 1439 22 0 0 0 chr11 111969670 111969692 -9874164 + AT_rich Low_complexity Low_complexity 1 22 0 8 1439 237 132 0 0 chr11 111969762 111969800 -9874056 + (A)n Simple_repeat Simple_repeat 1 38 0 8 1439 275 322 0 11 chr11 111970235 111970323 -9873533 + CT-rich Low_complexity Low_complexity 2 88 0 8 1439 396 229 13 0 chr11 111970412 111970569 -9873287 + (TG)n Simple_repeat Simple_repeat 1 159 0 8 1439 252 0 0 0 chr11 111970569 111970597 -9873259 + (TTG)n Simple_repeat Simple_repeat 2 29 0 8 1439 284 241 86 43 chr11 111970598 111970715 -9873141 + Lx8 LINE L1 7349 7470 -3 8 1439 1066 275 14 34 chr11 111970737 111971034 -9872822 + B4 SINE B4 2 292 0 8 1439 441 191 0 0 chr11 111971037 111971147 -9872709 + (CA)n Simple_repeat Simple_repeat 2 111 0 8 1439 666 307 17 101 chr11 111973505 111973802 -9870054 + B4A SINE B4 2 273 -19 8 1439 486 0 0 0 chr11 111974753 111974807 -9869049 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 8 1439 779 259 31 51 chr11 111975984 111976179 -9867677 + B3A SINE B2 1 191 -7 8 1439 531 301 13 33 chr11 111976197 111976348 -9867508 + B1F SINE Alu 1 148 -1 8 1439 27 49 0 0 chr11 111976358 111976399 -9867457 + AT_rich Low_complexity Low_complexity 1 41 0 8 1439 1628 75 0 32 chr11 111976403 111976624 -9867232 - L1Md_F2 LINE L1 -13 6569 6356 8 1439 200 61 0 57 chr11 111976938 111976973 -9866883 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 8 1439 895 226 78 100 chr11 111977386 111977705 -9866151 + RLTR20C LTR ERVK 1 312 -222 8 1439 546 212 138 7 chr11 111977703 111977762 -9866094 + RLTR20C LTR ERVK 423 481 -97 8 1439 306 0 0 0 chr11 111977762 111977796 -9866060 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1439 546 212 138 7 chr11 111977796 111977874 -9865982 + RLTR20C LTR ERVK 482 577 -1 8 1439 243 61 0 0 chr11 111979063 111979096 -9864760 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1439 288 0 0 0 chr11 111979318 111979350 -9864506 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1439 489 283 42 27 chr11 111979351 111979647 -9864209 - ORR1E LTR MaLR 0 379 21 8 1439 342 0 0 0 chr11 111980166 111980204 -9863652 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1439 648 279 64 35 chr11 111980216 111980459 -9863397 + RMER15 LTR ERVL 84 451 -124 8 1439 1977 174 237 62 chr11 111981260 111981758 -9862098 + RMER4B LTR ERVK 1 585 0 8 1439 1303 259 30 44 chr11 111981813 111982177 -9861679 + ORR1E LTR MaLR 1 359 0 8 1439 241 268 5 5 chr11 111982382 111982463 -9861393 - MLT2B2 LTR ERVL -473 81 1 8 1439 289 284 0 29 chr11 111982471 111982540 -9861316 + MER20 DNA MER1_type 33 99 -120 8 1439 22 0 0 0 chr11 111982875 111982897 -9860959 + AT_rich Low_complexity Low_complexity 1 22 0 9 1439 27 0 0 0 chr11 111983027 111983054 -9860802 + AT_rich Low_complexity Low_complexity 1 27 0 9 1439 180 0 0 0 chr11 111983555 111983575 -9860281 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1439 813 21 0 0 chr11 111983962 111984057 -9859799 + (TG)n Simple_repeat Simple_repeat 1 95 0 9 1439 250 169 15 15 chr11 111984361 111984427 -9859429 + CT-rich Low_complexity Low_complexity 1 66 0 9 1439 222 192 0 37 chr11 111984427 111984508 -9859348 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1439 477 0 0 0 chr11 111984520 111984573 -9859283 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1439 285 29 0 0 chr11 111985735 111985769 -9858087 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 9 1439 27 0 0 0 chr11 111986268 111986295 -9857561 + AT_rich Low_complexity Low_complexity 1 27 0 9 1439 387 0 0 0 chr11 111987605 111987648 -9856208 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1439 775 329 24 48 chr11 111987686 111987980 -9855876 - B4A SINE B4 0 292 6 9 1439 239 345 0 0 chr11 111988504 111988562 -9855294 + B3A SINE B2 111 168 -30 9 1439 485 304 149 72 chr11 111988650 111988912 -9854944 + B4A SINE B4 1 282 -10 9 1439 188 111 28 0 chr11 111988980 111989016 -9854840 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1439 270 206 0 0 chr11 111991946 111992014 -9851842 + (TATG)n Simple_repeat Simple_repeat 2 69 0 9 1439 758 296 79 29 chr11 111992022 111992300 -9851556 - B4 SINE B4 0 292 1 9 1439 270 176 0 0 chr11 111992370 111992421 -9851435 + GA-rich Low_complexity Low_complexity 2 52 0 9 1439 2587 74 6 9 chr11 111992508 111992837 -9851019 + L1_Mus1 LINE L1 6240 6567 0 9 1439 1154 84 12 0 chr11 111992856 111993023 -9850833 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 9 1439 330 318 156 0 chr11 111994004 111994158 -9849698 - LTR82B Low_complexity ERVL -652 178 1 9 1439 872 212 122 0 chr11 111994799 111994988 -9848868 + B3 SINE B2 5 216 0 9 1439 347 391 83 34 chr11 111995320 111995524 -9848332 - MER115 DNA Tip100 -467 226 13 9 1439 558 342 69 20 chr11 111996185 111996430 -9847426 - Tigger7 DNA MER2_type -2183 308 52 9 1439 1257 256 25 34 chr11 111997566 111997893 -9845963 + MTE2b LTR MaLR 18 341 -38 9 1439 250 114 0 79 chr11 111997893 111997969 -9845887 + T-rich Low_complexity Low_complexity 2 71 0 9 1439 223 310 111 14 chr11 111999810 111999882 -9843974 + ID4_ SINE ID 4 82 -1 9 1439 1369 246 63 62 chr11 112000399 112000933 -9842923 - Lx7 LINE L1 0 7696 7180 1 1439 274 232 10 180 chr11 112001259 112001359 -9842497 + RSINE1 SINE B4 83 165 0 2 1439 245 298 131 0 chr11 112001495 112001579 -9842277 + PB1D7 SINE Alu 11 105 -15 3 1439 477 309 60 7 chr11 112003254 112003404 -9840452 - ID_B1 SINE B4 -7 217 60 4 1439 217 132 0 0 chr11 112004349 112004387 -9839469 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1439 535 270 35 45 chr11 112004904 112005102 -9838754 + B3A SINE B2 3 198 0 6 1439 21 0 0 0 chr11 112005653 112005674 -9838182 + AT_rich Low_complexity Low_complexity 1 21 0 7 1439 216 0 0 0 chr11 112005718 112005742 -9838114 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1439 229 188 0 0 chr11 112006030 112006078 -9837778 - Lx8 LINE L1 0 7473 7426 9 1439 204 231 0 0 chr11 112007131 112007183 -9836673 + A-rich Low_complexity Low_complexity 1 52 0 1 1439 185 122 0 47 chr11 112008335 112008378 -9835478 + CT-rich Low_complexity Low_complexity 4 44 0 1 1439 901 293 191 10 chr11 112008549 112008852 -9835004 + MTE2b LTR MaLR 13 370 -9 1 1439 477 0 0 0 chr11 112009799 112009852 -9834004 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 1439 381 22 0 0 chr11 112010114 112010160 -9833696 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1439 2227 201 56 49 chr11 112010405 112010980 -9832876 - RMER1B Other Other 0 1066 488 1 1439 1869 171 36 134 chr11 112011356 112011849 -9832007 + RMER1C Other Other 886 1330 -12 1 1439 776 260 14 52 chr11 112012359 112012570 -9831286 - B3 SINE B2 -13 203 1 1 1439 342 0 0 0 chr11 112013033 112013071 -9830785 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1439 31 26 0 0 chr11 112013159 112013197 -9830659 + AT_rich Low_complexity Low_complexity 1 38 0 1 1439 630 39 0 0 chr11 112013262 112013339 -9830517 + (TTCTC)n Simple_repeat Simple_repeat 2 78 0 2 1439 229 310 92 18 chr11 112013662 112013879 -9829977 + L1M7 LINE L1 59 291 -5927 2 1439 207 255 0 21 chr11 112014078 112014126 -9829730 + CT-rich Low_complexity Low_complexity 1 47 0 2 1439 221 119 0 23 chr11 112014144 112014187 -9829669 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 2 1439 937 198 148 11 chr11 112014231 112014420 -9829436 + B3 SINE B2 1 215 -1 2 1439 270 354 50 30 chr11 112014546 112014747 -9829109 - MER57C2 LTR ERV1 0 434 230 2 1439 286 336 0 138 chr11 112014872 112015024 -9828832 - RSINE1 SINE B4 0 165 35 2 1439 452 18 18 0 chr11 112015691 112015748 -9828108 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1439 405 0 0 0 chr11 112017138 112017183 -9826673 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1439 850 245 135 39 chr11 112017405 112017664 -9826192 - B4 SINE B4 -7 285 2 2 1439 268 274 58 23 chr11 112017783 112017869 -9825987 - 5S rRNA rRNA -30 91 3 3 1439 527 317 68 17 chr11 112018363 112018542 -9825314 + B3 SINE B2 19 189 -27 3 1439 676 271 0 12 chr11 112018642 112018803 -9825053 + B3A SINE B2 4 162 -36 3 1439 2795 89 12 30 chr11 112019908 112020314 -9823542 + L1_Mus1 LINE L1 6168 6566 -1 3 1439 1005 273 6 91 chr11 112020462 112020780 -9823076 + B4 SINE B4 2 292 0 3 1439 186 209 0 0 chr11 112020787 112020830 -9823026 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1439 248 169 65 48 chr11 112022461 112022523 -9821333 + Lx8 LINE L1 5844 5906 -1567 3 1439 192 312 31 15 chr11 112023647 112023712 -9820144 + MIR SINE MIR 50 115 -93 3 1439 909 216 42 51 chr11 112023901 112024116 -9819740 + B3 SINE B2 1 213 -3 3 1439 1212 82 0 0 chr11 112024728 112024875 -9818981 + B1_Mus2 SINE Alu 1 147 0 3 1439 335 87 22 0 chr11 112025695 112025741 -9818115 - HAL1-3A_ME LINE L1 -836 2022 1976 4 1439 393 204 0 0 chr11 112025750 112025921 -9817935 + (TG)n Simple_repeat Simple_repeat 1 171 0 4 1439 650 285 152 16 chr11 112025931 112026181 -9817675 - B4A SINE B4 -8 284 1 4 1439 207 0 0 0 chr11 112027106 112027129 -9816727 + (GGA)n Simple_repeat Simple_repeat 1 23 0 4 1439 297 0 0 0 chr11 112028011 112028044 -9815812 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1439 491 242 76 23 chr11 112028070 112028201 -9815655 - Lx8 LINE L1 -386 7087 6950 4 1439 1278 48 0 7 chr11 112028905 112029053 -9814803 + B1_Mm SINE Alu 1 147 0 4 1439 618 14 0 0 chr11 112029057 112029128 -9814728 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 1439 415 270 61 0 chr11 112029274 112029389 -9814467 + Lx8 LINE L1 7169 7290 -183 4 1439 320 329 12 0 chr11 112032670 112032755 -9811101 - RSINE1 SINE B4 -76 89 4 4 1439 264 278 167 0 chr11 112032958 112033066 -9810790 + L1MA4A LINE L1 5817 5942 -361 5 1439 394 332 54 54 chr11 112033662 112033866 -9809990 - B3 SINE B2 -12 204 1 5 1439 1189 168 167 12 chr11 112034044 112034398 -9809458 + RMER1B Other Other 658 1066 0 5 1439 216 0 0 0 chr11 112036050 112036074 -9807782 + (TTC)n Simple_repeat Simple_repeat 1 24 0 5 1439 471 308 86 114 chr11 112037666 112038121 -9805735 + MLT1J LTR MaLR 1 442 -70 5 1439 705 221 8 0 chr11 112038301 112038432 -9805424 - RSINE1 SINE B4 -29 136 5 5 1439 213 318 87 62 chr11 112038459 112038620 -9805236 + MIRc SINE MIR 4 168 -100 5 1439 660 297 5 32 chr11 112038731 112038919 -9804937 - B3A SINE B2 -15 183 1 5 1439 432 293 180 25 chr11 112039276 112039521 -9804335 + B4 SINE B4 5 287 -5 5 1439 449 120 0 12 chr11 112039539 112039623 -9804233 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1439 513 279 43 129 chr11 112040209 112040367 -9803489 + ID_B1 SINE B4 2 151 -73 6 1439 1247 49 0 0 chr11 112040367 112040509 -9803347 + B1_Mus2 SINE Alu 4 145 -2 6 1439 513 279 43 129 chr11 112040509 112040560 -9803296 + ID_B1 SINE B4 152 193 -31 6 1439 186 103 0 0 chr11 112040581 112040610 -9803246 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1439 522 31 0 0 chr11 112040610 112040674 -9803182 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1439 224 111 0 22 chr11 112043700 112043746 -9800110 + (CCA)n Simple_repeat Simple_repeat 2 46 0 6 1439 198 0 0 0 chr11 112043821 112043843 -9800013 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 6 1439 208 304 0 0 chr11 112044130 112044176 -9799680 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1439 200 333 30 0 chr11 112045017 112045116 -9798740 + (TATG)n Simple_repeat Simple_repeat 4 105 0 6 1439 201 298 0 0 chr11 112045069 112045126 -9798730 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1439 824 307 76 20 chr11 112045126 112045469 -9798387 - MLT2C2 LTR ERVL -51 413 52 6 1439 4802 122 22 9 chr11 112045751 112046445 -9797411 + Lx3A LINE L1 6269 6971 -10 7 1439 198 103 0 0 chr11 112048963 112048992 -9794864 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 7 1439 804 150 25 8 chr11 112049083 112049322 -9794534 + GA-rich Low_complexity Low_complexity 1 243 0 7 1439 211 195 0 38 chr11 112049572 112049652 -9794204 + (TAG)n Simple_repeat Simple_repeat 1 77 0 7 1439 1269 57 0 16 chr11 112049994 112050244 -9793612 + (TG)n Simple_repeat Simple_repeat 1 245 0 7 1439 301 301 34 87 chr11 112050662 112050811 -9793045 + MLT2B3 LTR ERVL 1 141 -413 7 1439 231 355 69 73 chr11 112050844 112051105 -9792751 + ORR1E LTR MaLR 98 357 -2 7 1439 189 0 0 0 chr11 112051206 112051227 -9792629 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1439 791 239 28 0 chr11 112051227 112051407 -9792449 + B3 SINE B2 28 212 -4 7 1439 249 208 0 38 chr11 112052823 112052903 -9790953 + (TTTG)n Simple_repeat Simple_repeat 4 80 0 7 1439 274 233 39 43 chr11 112052903 112053047 -9790809 + Lx8 LINE L1 7357 7473 0 8 1439 228 288 0 0 chr11 112053296 112053355 -9790501 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1439 282 29 0 0 chr11 112053835 112053870 -9789986 - U2 snRNA snRNA -153 35 1 8 1439 602 309 22 54 chr11 112054546 112054731 -9789125 - B4A SINE B4 -2 290 112 8 1439 1400 208 139 23 chr11 112055589 112055933 -9787923 + ORR1C2 LTR MaLR 1 384 0 8 1439 263 209 33 65 chr11 112057641 112057733 -9786123 - L1MCa LINE L1 -4549 1959 1871 8 1439 219 25 24 48 chr11 112057933 112057975 -9785881 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1439 432 55 0 0 chr11 112058336 112058391 -9785465 + (TTC)n Simple_repeat Simple_repeat 2 56 0 8 1439 237 65 0 0 chr11 112058677 112058708 -9785148 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 8 1439 186 270 0 0 chr11 112059736 112059799 -9784057 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1439 921 286 88 46 chr11 112059815 112060230 -9783626 - MLT2B4 LTR ERVL -50 470 25 9 1439 22 0 0 0 chr11 112060446 112060468 -9783388 + AT_rich Low_complexity Low_complexity 1 22 0 9 1439 361 285 57 2 chr11 112060469 112060579 -9783277 - B1F2 SINE Alu -2 125 5 9 1439 334 314 144 40 chr11 112062059 112062358 -9781498 - MER2 DNA MER2_type -8 337 8 9 1439 203 179 0 0 chr11 112062497 112062536 -9781320 + A-rich Low_complexity Low_complexity 3 41 0 9 1439 288 0 0 0 chr11 112062809 112062841 -9781015 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 1439 783 309 62 26 chr11 112063068 112063340 -9780516 + B4 SINE B4 8 289 -3 9 1439 3737 15 2 0 chr11 112063706 112064101 -9779755 - MTA_Mm LTR MaLR 0 396 1 9 1439 224 286 53 42 chr11 112065939 112066034 -9777822 - MIRc SINE MIR -92 176 81 9 1439 398 20 20 0 chr11 112066357 112066408 -9777448 + (TC)n Simple_repeat Simple_repeat 2 53 0 9 1439 270 0 0 0 chr11 112066408 112066437 -9777419 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1440 378 0 0 0 chr11 112067414 112067456 -9776400 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1 1440 1022 123 0 7 chr11 112067457 112067612 -9776244 - B2_Mm2 SINE B2 -41 154 1 1 1440 279 0 0 0 chr11 112068753 112068784 -9775072 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1440 360 64 0 0 chr11 112068784 112068830 -9775026 + (TTGG)n Simple_repeat Simple_repeat 1 47 0 1 1440 523 303 48 82 chr11 112069207 112069498 -9774358 + B4A SINE B4 3 283 -9 1 1440 25 0 0 0 chr11 112069544 112069569 -9774287 + AT_rich Low_complexity Low_complexity 1 25 0 1 1440 888 84 0 44 chr11 112070972 112071109 -9772747 + Lx2A1 LINE L1 6877 7007 -1 1 1440 279 284 105 0 chr11 112071543 112071638 -9772218 + PB1D10 SINE Alu 5 109 -8 1 1440 243 0 0 0 chr11 112071640 112071667 -9772189 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1440 694 294 19 29 chr11 112072301 112072511 -9771345 - ID_B1 SINE B4 -16 208 1 1 1440 311 313 168 14 chr11 112072711 112072815 -9771041 - Lx8 LINE L1 -142 7331 7213 1 1440 288 0 0 0 chr11 112072815 112072847 -9771009 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1440 311 313 168 14 chr11 112072847 112072962 -9770894 - Lx8 LINE L1 -261 7212 7078 1 1440 830 278 27 45 chr11 112075574 112075796 -9768060 + B4A SINE B4 2 219 -73 1 1440 180 0 0 0 chr11 112075799 112075819 -9768037 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1440 348 312 92 106 chr11 112076688 112076954 -9766902 + B4 SINE B4 3 278 -14 1 1440 366 23 0 0 chr11 112076977 112077020 -9766836 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1440 260 53 0 26 chr11 112077020 112077059 -9766797 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1440 219 286 0 0 chr11 112077070 112077154 -9766702 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 1440 400 165 11 11 chr11 112077393 112077485 -9766371 + GA-rich Low_complexity Low_complexity 3 94 0 1 1440 222 217 22 0 chr11 112078618 112078664 -9765192 + GA-rich Low_complexity Low_complexity 5 51 0 1 1440 192 179 0 0 chr11 112079357 112079396 -9764460 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 1 1440 405 0 0 0 chr11 112079558 112079603 -9764253 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1440 290 306 8 16 chr11 112079721 112079844 -9764012 + (TATATG)n Simple_repeat Simple_repeat 3 124 0 1 1440 542 364 17 51 chr11 112079844 112080139 -9763717 - B4A SINE B4 -4 288 4 1 1440 216 67 0 0 chr11 112080983 112081013 -9762843 + (TATG)n Simple_repeat Simple_repeat 2 31 0 1 1440 185 0 40 0 chr11 112081498 112081523 -9762333 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1440 312 158 0 0 chr11 112081525 112081582 -9762274 + GA-rich Low_complexity Low_complexity 3 59 0 1 1440 1304 75 6 31 chr11 112081583 112081941 -9761915 + (GAAA)n Simple_repeat Simple_repeat 1 349 0 1 1440 616 301 6 6 chr11 112082037 112082194 -9761662 + RSINE1 SINE B4 9 165 0 1 1440 1200 58 0 0 chr11 112082419 112082556 -9761300 + B1_Mm SINE Alu 2 138 -9 1 1440 596 292 51 157 chr11 112082759 112083193 -9760663 + Charlie1 DNA MER1_type 1807 2194 -587 1 1440 261 0 0 0 chr11 112083210 112083239 -9760617 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1440 279 0 0 0 chr11 112083239 112083269 -9760587 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1440 552 300 91 29 chr11 112083274 112083449 -9760407 - B3A SINE B2 -12 186 1 1 1440 246 356 82 63 chr11 112084142 112084301 -9759555 + RMER21A LTR ERV1 778 939 -8 1 1440 1557 14 0 0 chr11 112085056 112085267 -9758589 + (GAA)n Simple_repeat Simple_repeat 1 211 0 1 1440 542 302 18 65 chr11 112085417 112085693 -9758163 + Lx8 LINE L1 7210 7472 -1 1 1440 239 347 19 75 chr11 112085721 112085880 -9757976 + MIRb SINE MIR 102 251 -17 1 1440 979 228 43 5 chr11 112086057 112086264 -9757592 + B3 SINE B2 1 215 -1 1 1440 255 242 0 0 chr11 112087381 112087443 -9756413 + T-rich Low_complexity Low_complexity 1 62 0 1 1440 557 301 30 8 chr11 112087528 112087662 -9756194 + RSINE1 SINE B4 5 141 -24 1 1440 486 0 0 0 chr11 112087668 112087722 -9756134 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1440 252 0 0 0 chr11 112087722 112087749 -9756107 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1440 613 325 36 0 chr11 112088330 112088496 -9755360 + B3A SINE B2 2 173 -25 1 1440 560 14 14 0 chr11 112088497 112088566 -9755290 + (CATA)n Simple_repeat Simple_repeat 3 72 0 1 1440 245 323 0 0 chr11 112088941 112089006 -9754850 - L2 LINE L2 -671 2748 2684 1 1440 407 279 59 42 chr11 112089254 112089493 -9754363 + L1MA8 LINE L1 5561 5803 -497 1 1440 684 188 0 0 chr11 112089494 112089632 -9754224 + (TA)n Simple_repeat Simple_repeat 1 138 0 1 1440 4498 148 27 26 chr11 112089643 112090377 -9753479 - Lx4B LINE L1 0 7058 6324 1 1440 4288 164 37 6 chr11 112090377 112091269 -9752587 + Lx4B LINE L1 5415 6329 -729 1 1440 633 315 45 66 chr11 112091263 112091640 -9752216 + L1MA8 LINE L1 5789 6157 -134 1 1440 312 285 106 0 chr11 112091661 112091784 -9752072 + B1F SINE Alu 5 140 -9 1 1440 2867 134 20 2 chr11 112091966 112092406 -9751450 - Lx2B LINE L1 -23 6977 6530 1 1440 887 287 33 5 chr11 112092421 112092631 -9751225 - B3 SINE B2 0 216 1 1 1440 260 304 34 51 chr11 112092772 112092890 -9750966 + RMER12 LTR ERVK 736 851 -471 1 1440 224 247 37 12 chr11 112092913 112092995 -9750861 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1440 1272 48 0 0 chr11 112094508 112094653 -9749203 - B1_Mus1 SINE Alu 0 148 4 1 1440 868 132 0 28 chr11 112094774 112094954 -9748902 + GA-rich Low_complexity Low_complexity 3 177 0 1 1440 348 339 108 38 chr11 112095699 112096128 -9747728 + LTR33A LTR ERVL 26 513 -2 1 1440 180 0 0 0 chr11 112096572 112096592 -9747264 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1440 218 183 0 14 chr11 112096673 112096745 -9747111 + CT-rich Low_complexity Low_complexity 2 72 0 1 1440 331 65 22 0 chr11 112096747 112096793 -9747063 - HAL1-3A_ME LINE L1 -828 2030 1984 1 1440 769 300 68 21 chr11 112096795 112097074 -9746782 - B4A SINE B4 0 292 1 1 1440 21 0 0 0 chr11 112097802 112097823 -9746033 + AT_rich Low_complexity Low_complexity 1 21 0 1 1440 747 285 39 49 chr11 112098161 112098445 -9745411 + B4 SINE B4 4 284 -8 1 1440 486 61 0 0 chr11 112098464 112098530 -9745326 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1440 416 69 17 0 chr11 112098532 112098590 -9745266 + HAL1-3A_ME LINE L1 1976 2034 -824 1 1440 764 259 105 25 chr11 112098941 112099179 -9744677 - MTD LTR MaLR -29 390 134 1 1440 194 275 0 0 chr11 112100086 112100126 -9743730 + MIRm SINE MIR 217 256 -20 1 1440 404 67 0 16 chr11 112102059 112102120 -9741736 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1440 616 293 108 13 chr11 112102130 112102362 -9741494 - B4A SINE B4 -38 254 1 1 1440 1460 75 5 5 chr11 112102566 112102753 -9741103 - B2_Mm2 SINE B2 -5 190 4 1 1440 1052 91 0 7 chr11 112103915 112104070 -9739786 + (GGAA)n Simple_repeat Simple_repeat 3 156 0 1 1440 224 88 70 0 chr11 112104232 112104289 -9739567 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1 1440 610 270 0 49 chr11 112104608 112104752 -9739104 - B1F2 SINE Alu -12 137 1 1 1440 434 288 47 42 chr11 112105194 112105386 -9738470 - B3A SINE B2 -3 195 3 1 1440 342 67 0 0 chr11 112106520 112106565 -9737291 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 1440 2262 182 7 42 chr11 112106580 112107009 -9736847 + MTC LTR MaLR 6 419 -2 1 1440 374 66 33 0 chr11 112107035 112107096 -9736760 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 1440 251 340 19 74 chr11 112109167 112109329 -9734527 - MLT1B LTR MaLR 0 390 238 1 1440 708 285 141 27 chr11 112109441 112109548 -9734308 - MTD LTR MaLR -67 352 224 1 1440 464 0 18 0 chr11 112109548 112109604 -9734252 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 1 1440 708 285 141 27 chr11 112109604 112109795 -9734061 - MTD LTR MaLR -196 223 20 1 1440 3912 31 2 28 chr11 112110053 112110513 -9733343 + L1Md_F3 LINE L1 6135 6582 -2 1 1440 22 56 0 0 chr11 112111144 112111180 -9732676 + AT_rich Low_complexity Low_complexity 1 36 0 1 1440 231 161 48 16 chr11 112111220 112111283 -9732573 + L1M5 LINE L1 2123 2187 -3959 1 1440 298 235 11 23 chr11 112111520 112111607 -9732249 + L1ME1 LINE L1 5829 5914 -265 1 1440 654 79 0 0 chr11 112111918 112112007 -9731849 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 1440 303 71 0 0 chr11 112112485 112112527 -9731329 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1440 702 200 22 29 chr11 112112959 112113098 -9730758 - B3 SINE B2 -74 142 5 1 1440 1018 190 85 0 chr11 112113349 112113549 -9730307 + URR1A DNA MER1_type 8 224 -2 1 1440 198 0 0 0 chr11 112114981 112115003 -9728853 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1440 180 0 0 0 chr11 112115007 112115027 -9728829 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1440 799 277 0 0 chr11 112115027 112115193 -9728663 - B3 SINE B2 -50 166 1 1 1440 852 280 28 149 chr11 112115518 112115750 -9728106 + B4 SINE B4 7 222 -70 1 1440 836 118 0 7 chr11 112115750 112115887 -9727969 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 1 1440 852 280 28 149 chr11 112115887 112115977 -9727879 + B4 SINE B4 223 290 -2 1 1440 320 296 11 22 chr11 112117462 112117552 -9726304 - B4A SINE B4 -201 91 3 1 1440 362 332 81 77 chr11 112117661 112117909 -9725947 + LTR88c LTR Genie? 614 862 0 1 1440 189 289 0 19 chr11 112117927 112117980 -9725876 + L4 LINE RTE 1632 1683 -346 1 1440 326 297 11 11 chr11 112118003 112118095 -9725761 + RSINE1 SINE B4 2 93 -72 1 1440 486 0 0 0 chr11 112118179 112118233 -9725623 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1440 28 29 0 0 chr11 112118233 112118268 -9725588 + AT_rich Low_complexity Low_complexity 1 35 0 1 1440 827 274 39 0 chr11 112118284 112118488 -9725368 + ID_B1 SINE B4 11 222 -2 2 1440 248 215 12 60 chr11 112118667 112118751 -9725105 + (CATA)n Simple_repeat Simple_repeat 4 83 0 2 1440 270 373 45 9 chr11 112119882 112119993 -9723863 + L3 LINE CR1 4373 4487 -2 2 1440 25 0 0 0 chr11 112120338 112120363 -9723493 + AT_rich Low_complexity Low_complexity 1 25 0 2 1440 361 303 101 0 chr11 112121185 112121294 -9722562 + MLT1F2 LTR MaLR 35 154 -406 2 1440 1078 247 57 58 chr11 112121322 112121724 -9722132 - MTE2a LTR MaLR -14 405 9 2 1440 218 298 18 0 chr11 112121754 112121811 -9722045 + B4 SINE B4 3 60 -232 2 1440 377 20 20 0 chr11 112121843 112121893 -9721963 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1440 243 0 0 0 chr11 112121893 112121919 -9721937 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1440 312 27 0 0 chr11 112123736 112123773 -9720083 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1440 203 305 17 0 chr11 112123774 112123833 -9720023 + CT-rich Low_complexity Low_complexity 5 64 0 2 1440 532 291 107 0 chr11 112124148 112124344 -9719512 + ID_B1 SINE B4 1 217 -7 2 1440 438 300 58 78 chr11 112124593 112124816 -9719040 + B4A SINE B4 2 226 -66 2 1440 1294 25 12 0 chr11 112124816 112124978 -9718878 + (TAGA)n Simple_repeat Simple_repeat 3 166 0 2 1440 438 300 58 78 chr11 112124978 112125047 -9718809 + B4A SINE B4 227 288 -4 2 1440 312 102 0 0 chr11 112125084 112125133 -9718723 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1440 181 304 60 48 chr11 112126083 112126166 -9717690 - L2c LINE L2 -36 3351 3268 2 1440 1965 215 19 62 chr11 112126260 112126681 -9717175 + MTC LTR MaLR 6 408 -13 2 1440 243 342 4 28 chr11 112127326 112127463 -9716393 + MIRb SINE MIR 32 167 -101 2 1440 312 339 84 35 chr11 112127619 112127667 -9716189 + MTEa LTR MaLR 105 165 -214 2 1440 282 29 0 0 chr11 112127667 112127702 -9716154 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1440 312 337 46 37 chr11 112127702 112127780 -9716076 + MTEa LTR MaLR 166 244 -135 2 1440 218 81 0 26 chr11 112130116 112130154 -9713702 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1440 1215 195 18 5 chr11 112130266 112130488 -9713368 + URR1A DNA MER1_type 2 226 0 2 1440 1014 249 112 27 chr11 112130632 112130970 -9712886 + MTEb LTR MaLR 5 371 -8 2 1440 1218 265 24 71 chr11 112131128 112131506 -9712350 - MTE2a LTR MaLR -17 362 3 2 1440 633 233 38 38 chr11 112132029 112132207 -9711649 - B3A SINE B2 -34 182 5 2 1440 198 0 0 0 chr11 112132829 112132851 -9711005 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2 1440 228 35 0 0 chr11 112132851 112132880 -9710976 + (TGG)n Simple_repeat Simple_repeat 1 29 0 2 1440 862 252 39 5 chr11 112132900 112133107 -9710749 - ID_B1 SINE B4 -10 214 1 2 1440 278 264 27 27 chr11 112135197 112135271 -9708585 - ID4 SINE ID -3 80 7 2 1440 198 103 0 0 chr11 112136087 112136116 -9707740 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1440 1794 211 23 8 chr11 112136116 112136469 -9707387 - ORR1D2 LTR MaLR -12 358 1 2 1440 795 251 43 10 chr11 112136649 112136858 -9706998 + ID_B1 SINE B4 1 216 -8 2 1440 235 189 19 19 chr11 112136861 112136915 -9706941 + GA-rich Low_complexity Low_complexity 6 59 0 2 1440 1688 221 33 14 chr11 112137934 112138297 -9705559 + ORR1D1 LTR MaLR 5 374 0 2 1440 706 50 20 0 chr11 112138930 112139029 -9704827 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1440 347 282 0 49 chr11 112139375 112139457 -9704399 + ID4 SINE ID 6 83 0 2 1440 1180 108 48 111 chr11 112139486 112139694 -9704162 - Lx2B LINE L1 -181 6819 6625 2 1440 934 158 48 6 chr11 112139695 112139861 -9703995 + Lx2B LINE L1 6823 6995 -5 2 1440 240 288 152 0 chr11 112139869 112139935 -9703921 - MER3 DNA MER1_type -85 124 49 2 1440 441 323 24 6 chr11 112139947 112140112 -9703744 - RMER15 LTR ERVL -14 561 394 2 1440 450 0 0 0 chr11 112140619 112140669 -9703187 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1440 245 188 0 0 chr11 112140693 112140741 -9703115 - Lx9 LINE L1 -208 7436 7389 2 1440 1035 272 125 11 chr11 112140816 112141191 -9702665 - Lx9 LINE L1 -369 7275 6858 2 1440 396 0 0 0 chr11 112141192 112141236 -9702620 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1440 428 276 120 49 chr11 112141425 112141669 -9702187 - B4 SINE B4 -23 269 9 2 1440 517 346 102 0 chr11 112142320 112142603 -9701253 + MER44A DNA MER2_type 7 318 -21 2 1440 749 277 104 59 chr11 112143029 112143367 -9700489 - ORR1E LTR MaLR -6 353 1 2 1440 209 174 43 0 chr11 112143568 112143614 -9700242 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 2 1440 301 308 0 23 chr11 112143625 112143846 -9700010 + CT-rich Low_complexity Low_complexity 1 215 0 2 1440 186 43 0 0 chr11 112144575 112144598 -9699258 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1440 240 35 0 0 chr11 112144600 112144629 -9699227 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1440 544 231 59 29 chr11 112145168 112145415 -9698441 - MTD LTR MaLR -1 418 114 2 1440 531 45 0 0 chr11 112145415 112145481 -9698375 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1440 743 148 0 7 chr11 112145479 112145615 -9698241 + GA-rich Low_complexity Low_complexity 2 136 0 2 1440 253 118 14 29 chr11 112145618 112145688 -9698168 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 2 1440 428 305 59 25 chr11 112146258 112146544 -9697312 + L1MB7 LINE L1 5888 6183 -1 2 1440 320 190 89 10 chr11 112146627 112146728 -9697128 - Lx5 LINE L1 0 7050 6942 2 1440 24 53 0 0 chr11 112146728 112146766 -9697090 + AT_rich Low_complexity Low_complexity 1 38 0 2 1440 514 266 141 23 chr11 112146766 112146943 -9696913 - B3A SINE B2 0 198 1 2 1440 2400 190 74 42 chr11 112147543 112148108 -9695748 - RLTR31A_Mm LTR ERVK -1 583 1 2 1440 564 282 0 0 chr11 112148365 112148482 -9695374 + B1F2 SINE Alu 5 121 -28 2 1440 432 97 0 0 chr11 112148506 112148568 -9695288 + (TGG)n Simple_repeat Simple_repeat 1 62 0 2 1440 343 354 41 20 chr11 112148893 112149089 -9694767 - MLT2C1 LTR ERVL -197 200 1 2 1440 429 20 0 0 chr11 112149385 112149435 -9694421 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1440 1642 39 93 5 chr11 112150228 112150433 -9693423 - L1Md_F3 LINE L1 0 6584 6362 2 1440 351 0 0 0 chr11 112150618 112150657 -9693199 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 2 1440 3477 48 2 2 chr11 112151093 112151489 -9692367 - MTA_Mm LTR MaLR 0 396 1 2 1440 2254 170 50 5 chr11 112151582 112151978 -9691878 - MTC LTR MaLR -7 414 1 2 1440 580 274 28 9 chr11 112152005 112152247 -9691609 - L1MA4A LINE L1 -367 5936 5622 2 1440 800 271 1 45 chr11 112152756 112152977 -9690879 + B3A SINE B2 1 215 -1 2 1440 405 214 40 71 chr11 112152989 112153115 -9690741 + RSINE1 SINE B4 44 165 0 2 1440 24 32 0 0 chr11 112153723 112153754 -9690102 + AT_rich Low_complexity Low_complexity 1 31 0 2 1440 766 250 0 13 chr11 112153767 112153917 -9689939 - RSINE1 SINE B4 -15 150 3 2 1440 660 309 16 11 chr11 112154022 112154205 -9689651 + B3 SINE B2 8 191 -25 2 1440 387 89 0 0 chr11 112155347 112155403 -9688453 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1440 742 167 0 0 chr11 112155784 112155898 -9687958 + B3 SINE B2 1 114 -102 2 1440 408 308 43 31 chr11 112155957 112156118 -9687738 + RSINE1 SINE B4 3 165 0 2 1440 281 265 12 24 chr11 112156125 112156210 -9687646 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 2 1440 360 338 56 0 chr11 112156422 112156564 -9687292 - MIR SINE MIR -17 245 96 2 1440 219 321 23 58 chr11 112156790 112156876 -9686980 + ID4_ SINE ID 1 83 0 2 1440 1057 24 0 0 chr11 112157649 112157775 -9686081 + B1_Mm SINE Alu 22 147 0 2 1440 342 0 0 0 chr11 112157775 112157813 -9686043 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1440 501 264 0 0 chr11 112158202 112158421 -9685435 + (CA)n Simple_repeat Simple_repeat 1 219 0 2 1440 272 234 0 15 chr11 112158440 112158505 -9685351 - L1M3 LINE L1 -1210 4930 4867 2 1440 405 0 0 0 chr11 112158853 112158898 -9684958 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1440 23 0 0 0 chr11 112159127 112159150 -9684706 + AT_rich Low_complexity Low_complexity 1 23 0 2 1440 1021 234 24 0 chr11 112159170 112159375 -9684481 - B3 SINE B2 -4 212 3 2 1440 630 296 12 47 chr11 112159402 112159421 -9684435 - RSINE1 SINE B4 0 165 152 2 1440 495 0 0 0 chr11 112159421 112159476 -9684380 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1440 372 119 0 0 chr11 112159476 112159534 -9684322 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1440 630 296 12 47 chr11 112159534 112159683 -9684173 - RSINE1 SINE B4 -14 151 3 2 1440 940 245 19 19 chr11 112160935 112161151 -9682705 + B3 SINE B2 1 216 0 2 1440 379 270 87 0 chr11 112161909 112162024 -9681832 - ID_B1 SINE B4 -98 126 2 2 1440 213 410 5 64 chr11 112162043 112162115 -9681741 - B3A SINE B2 -7 191 1 2 1440 513 258 53 23 chr11 112162115 112162246 -9681610 - B4A SINE B4 -157 135 1 2 1440 288 338 22 7 chr11 112162334 112162471 -9681385 - L1M5 LINE L1 -402 5771 5633 2 1440 216 267 0 43 chr11 112162471 112162518 -9681338 + RSINE1 SINE B4 2 46 -119 2 1440 296 270 0 0 chr11 112162644 112162718 -9681138 - L1M5 LINE L1 -534 5639 5566 2 1440 657 0 0 0 chr11 112162920 112162993 -9680863 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 2 1440 555 81 0 0 chr11 112163783 112163869 -9679987 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1440 1041 261 0 5 chr11 112163926 112164138 -9679718 - B3 SINE B2 -1 215 5 2 1440 206 278 128 55 chr11 112164241 112164416 -9679440 + MIR3 SINE MIR 39 224 -38 2 1440 791 299 19 9 chr11 112164617 112164830 -9679026 + B3 SINE B2 2 216 0 2 1440 369 276 13 6 chr11 112164968 112165125 -9678731 + (TA)n Simple_repeat Simple_repeat 1 158 0 2 1440 743 245 102 66 chr11 112165159 112165556 -9678300 - MT2A LTR ERVL -97 504 6 3 1440 1193 297 3 10 chr11 112167640 112167929 -9675927 + B4 SINE B4 6 292 0 3 1440 199 146 36 0 chr11 112167929 112167984 -9675872 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1440 180 0 0 0 chr11 112167996 112168016 -9675840 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 3 1440 448 304 38 30 chr11 112168077 112168434 -9675422 - L1ME3B LINE L1 -257 5916 5557 3 1440 230 290 18 18 chr11 112169038 112169147 -9674709 - L1ME3B LINE L1 -1488 4658 4550 3 1440 27 29 0 0 chr11 112169328 112169362 -9674494 + AT_rich Low_complexity Low_complexity 1 34 0 3 1440 583 296 64 17 chr11 112169642 112169814 -9674042 + B3A SINE B2 1 180 -18 3 1440 625 257 142 37 chr11 112169859 112170105 -9673751 + B4A SINE B4 3 274 -18 3 1440 458 358 100 17 chr11 112170349 112170699 -9673157 - L1ME3B LINE L1 -2289 3857 3479 3 1440 185 196 0 19 chr11 112170718 112170770 -9673086 + (CATA)n Simple_repeat Simple_repeat 4 54 0 3 1440 237 239 32 11 chr11 112170789 112170882 -9672974 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 1440 3354 173 73 11 chr11 112170965 112171618 -9672238 - Lx5 LINE L1 -3 7047 6354 3 1440 2630 172 55 2 chr11 112171616 112172180 -9671676 + Lx5 LINE L1 5769 6362 -688 3 1440 24 85 0 0 chr11 112172675 112172734 -9671122 + AT_rich Low_complexity Low_complexity 1 59 0 3 1440 201 158 0 0 chr11 112173162 112173200 -9670656 + A-rich Low_complexity Low_complexity 2 39 0 3 1440 255 79 0 0 chr11 112173403 112173441 -9670415 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1440 1196 61 0 0 chr11 112173467 112173614 -9670242 - B1_Mus2 SINE Alu 0 147 1 3 1440 735 228 20 85 chr11 112173872 112174073 -9669783 + B3 SINE B2 1 188 -7 3 1440 516 132 0 28 chr11 112174840 112174949 -9668907 + GA-rich Low_complexity Low_complexity 1 106 0 3 1440 1725 303 68 35 chr11 112177247 112177706 -9666150 + Lx8 LINE L1 6358 6829 -644 3 1440 1111 82 7 0 chr11 112177706 112177852 -9666004 + B1_Mm SINE Alu 1 147 0 3 1440 1725 303 68 35 chr11 112177852 112178141 -9665715 + Lx8 LINE L1 6830 7131 -342 3 1440 476 250 96 46 chr11 112178648 112178677 -9665179 - Lx8 LINE L1 -26 7447 7420 3 1440 432 0 0 0 chr11 112178677 112178725 -9665131 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1440 476 250 96 46 chr11 112178725 112178892 -9664964 - Lx8 LINE L1 -54 7419 7241 3 1440 2057 259 50 26 chr11 112178962 112179588 -9664268 - Lx8 LINE L1 -211 7262 6622 3 1440 21 0 0 0 chr11 112180229 112180250 -9663606 + AT_rich Low_complexity Low_complexity 1 21 0 3 1440 206 339 8 33 chr11 112180286 112180408 -9663448 + GA-rich Low_complexity Low_complexity 1 119 0 3 1440 252 0 0 0 chr11 112180424 112180452 -9663404 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 1440 1230 28 0 0 chr11 112180454 112180595 -9663261 - B1_Mm SINE Alu -6 141 1 3 1440 29 0 0 0 chr11 112180595 112180624 -9663232 + AT_rich Low_complexity Low_complexity 1 29 0 3 1440 623 13 13 0 chr11 112181943 112182019 -9661837 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 3 1440 27 29 0 0 chr11 112182044 112182078 -9661778 + AT_rich Low_complexity Low_complexity 1 34 0 3 1440 737 296 58 4 chr11 112183115 112183390 -9660466 + B4A SINE B4 1 290 -2 3 1440 239 304 12 48 chr11 112184308 112184334 -9659522 + MT2A LTR ERVL 36 60 -473 3 1440 320 103 17 0 chr11 112184334 112184392 -9659464 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1440 239 304 12 48 chr11 112184392 112184448 -9659408 + MT2A LTR ERVL 61 115 -418 3 1440 480 262 29 0 chr11 112184395 112184498 -9659358 + MTE2a LTR MaLR 62 167 -212 3 1440 399 220 0 0 chr11 112184498 112184589 -9659267 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 3 1440 775 260 5 78 chr11 112184592 112184809 -9659047 + MTE2a LTR MaLR 179 379 0 3 1440 809 269 74 17 chr11 112185211 112185442 -9658414 + MTE2b LTR MaLR 24 267 -112 3 1440 240 232 18 0 chr11 112185952 112186008 -9657848 + B1F2 SINE Alu 1 57 -92 3 1440 450 0 0 0 chr11 112186467 112186517 -9657339 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1440 320 227 40 81 chr11 112186532 112186631 -9657225 + ID4_ SINE ID 8 102 -50 3 1440 480 255 0 0 chr11 112186711 112186872 -9656984 + (TG)n Simple_repeat Simple_repeat 2 162 0 3 1440 511 240 8 15 chr11 112187003 112187134 -9656722 - B1_Mur3 SINE Alu -18 131 2 3 1440 500 295 36 0 chr11 112187621 112187760 -9656096 + RSINE1 SINE B4 1 144 -21 3 1440 25 0 0 0 chr11 112187777 112187802 -9656054 + AT_rich Low_complexity Low_complexity 1 25 0 3 1440 216 254 32 0 chr11 112188176 112188239 -9655617 + CT-rich Low_complexity Low_complexity 4 68 0 3 1440 503 142 32 35 chr11 112188479 112188831 -9655025 + (CA)n Simple_repeat Simple_repeat 1 350 0 3 1440 279 79 0 0 chr11 112189396 112189434 -9654422 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 1440 756 325 44 0 chr11 112189851 112190122 -9653734 + B4 SINE B4 2 284 -8 3 1440 318 26 0 0 chr11 112190149 112190188 -9653668 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1440 330 277 30 66 chr11 112190189 112190491 -9653365 - RMER17D2 LTR ERVK -335 474 184 3 1440 441 0 0 0 chr11 112191509 112191558 -9652298 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 3 1440 313 294 87 19 chr11 112191741 112191845 -9652011 + PB1D10 SINE Alu 9 119 -1 3 1440 195 129 0 0 chr11 112192186 112192217 -9651639 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1440 974 304 18 0 chr11 112192230 112192510 -9651346 - Lx8 LINE L1 -723 6750 6466 3 1440 1100 319 83 15 chr11 112192537 112193045 -9650811 + Lx8 LINE L1 6766 7327 -146 3 1440 209 175 79 0 chr11 112193063 112193126 -9650730 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 3 1440 676 22 22 0 chr11 112193253 112193343 -9650513 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1440 244 312 0 45 chr11 112193352 112193419 -9650437 - RSINE1 SINE B4 -58 107 44 3 1440 266 268 143 34 chr11 112194192 112194339 -9649517 - Tigger7 DNA MER2_type -58 2433 2271 3 1440 245 113 0 36 chr11 112194332 112194387 -9649469 - Tigger7 DNA MER2_type -2374 117 65 3 1440 432 309 16 24 chr11 112194522 112194648 -9649208 - RSINE1 SINE B4 -39 126 2 3 1440 1594 239 114 10 chr11 112195320 112195801 -9648055 + MT2A LTR ERVL 3 533 0 3 1440 378 0 0 0 chr11 112197307 112197349 -9646507 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1440 450 0 0 0 chr11 112197349 112197398 -9646458 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1441 543 250 8 23 chr11 112199766 112199897 -9643959 + B1_Mur1 SINE Alu 4 132 -17 3 1441 378 0 0 0 chr11 112199902 112199944 -9643912 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 3 1441 1183 54 7 0 chr11 112200274 112200421 -9643435 + B1_Mus1 SINE Alu 1 148 0 3 1441 703 140 17 12 chr11 112200575 112200748 -9643108 + (CA)n Simple_repeat Simple_repeat 1 174 0 3 1441 751 126 34 7 chr11 112200772 112201185 -9642671 + (CA)n Simple_repeat Simple_repeat 1 424 0 3 1441 206 229 0 40 chr11 112201720 112201770 -9642086 + (CATA)n Simple_repeat Simple_repeat 4 51 0 3 1441 207 0 0 0 chr11 112201776 112201799 -9642057 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1441 318 292 0 0 chr11 112201848 112202009 -9641847 + (CATA)n Simple_repeat Simple_repeat 2 162 0 3 1441 338 123 16 66 chr11 112202030 112202091 -9641765 + HAL1-3A_ME LINE L1 1976 2033 -825 3 1441 219 229 66 79 chr11 112202839 112202915 -9640941 - B1F SINE Alu -2 147 73 3 1441 352 291 201 56 chr11 112203119 112203388 -9640468 + MLT1D LTR MaLR 172 479 -26 3 1441 37 39 0 0 chr11 112203388 112203439 -9640417 + AT_rich Low_complexity Low_complexity 1 51 0 3 1441 297 0 0 0 chr11 112203501 112203534 -9640322 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1441 397 325 18 0 chr11 112203549 112203663 -9640193 - RSINE1 SINE B4 -9 156 41 3 1441 1738 210 22 19 chr11 112203666 112204026 -9639830 + MTC LTR MaLR 1 361 -60 3 1441 374 169 0 0 chr11 112204396 112204455 -9639401 + MTC LTR MaLR 359 417 -2 3 1441 1384 239 41 38 chr11 112204693 112205062 -9638794 + MTEa LTR MaLR 9 378 -1 3 1441 396 0 0 0 chr11 112205894 112205938 -9637918 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1441 245 209 87 29 chr11 112206675 112206744 -9637112 - MLT2D LTR ERVL -157 257 185 3 1441 27 0 0 0 chr11 112207296 112207323 -9636533 + AT_rich Low_complexity Low_complexity 1 27 0 3 1441 396 0 0 0 chr11 112207823 112207867 -9635989 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1441 246 269 0 25 chr11 112208662 112208742 -9635114 + L1MB5 LINE L1 6070 6147 -27 3 1441 485 259 12 160 chr11 112209040 112209284 -9634572 - B3 SINE B2 -7 209 2 3 1441 988 241 31 123 chr11 112209286 112209702 -9634154 + MTE2a LTR MaLR 2 379 0 3 1441 234 0 0 0 chr11 112209724 112209750 -9634106 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1441 317 200 29 0 chr11 112210747 112210817 -9633039 + B4A SINE B4 130 201 -91 3 1441 619 259 58 82 chr11 112210821 112211085 -9632771 + ORR1D2 LTR MaLR 41 284 -110 3 1441 423 0 0 0 chr11 112211085 112211132 -9632724 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1441 569 263 23 167 chr11 112211132 112211261 -9632595 + ORR1D2 LTR MaLR 257 374 0 3 1441 362 287 104 82 chr11 112211263 112211381 -9632475 + ORR1E LTR MaLR 129 243 -116 3 1441 186 43 0 0 chr11 112211381 112211404 -9632452 + (CAG)n Simple_repeat Simple_repeat 1 23 0 3 1441 362 287 104 82 chr11 112211404 112211505 -9632351 + ORR1E LTR MaLR 244 353 -6 3 1441 479 296 11 41 chr11 112211743 112211965 -9631891 + Lx8 LINE L1 7014 7234 -239 3 1441 233 319 0 0 chr11 112211992 112212064 -9631792 + Lx8 LINE L1 7225 7296 -400 3 1441 207 0 0 0 chr11 112212387 112212410 -9631446 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1441 246 156 0 0 chr11 112212433 112212478 -9631378 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1441 336 200 38 45 chr11 112213717 112213874 -9629982 + RMER17A LTR ERVK 301 456 -295 3 1441 360 287 101 91 chr11 112214968 112215151 -9628705 + B4 SINE B4 1 194 -98 3 1441 271 301 40 14 chr11 112215151 112215225 -9628631 + B3 SINE B2 1 76 -140 3 1441 2069 192 47 5 chr11 112215225 112215442 -9628414 - MTC LTR MaLR -2 419 195 3 1441 2313 40 0 0 chr11 112215442 112215717 -9628139 - L1Md_T LINE L1 0 6582 6308 3 1441 2069 192 47 5 chr11 112215717 112215901 -9627955 - MTC LTR MaLR -227 194 2 3 1441 482 0 17 0 chr11 112215995 112216053 -9627803 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1441 240 293 0 85 chr11 112216239 112216321 -9627535 + MLT1L LTR MaLR 67 141 -421 3 1441 263 292 107 8 chr11 112216797 112216918 -9626938 + MLT1L LTR MaLR 346 478 -132 3 1441 789 329 68 73 chr11 112217105 112217486 -9626370 + MLT1H LTR MaLR 139 517 -32 3 1441 356 243 28 18 chr11 112217726 112217835 -9626021 - RMER15 LTR ERVL -43 532 423 3 1441 290 298 39 55 chr11 112218238 112218366 -9625490 + MER5A DNA MER1_type 34 159 -30 4 1441 534 268 55 72 chr11 112218669 112218850 -9625006 - B3A SINE B2 -18 180 3 4 1441 3379 33 5 0 chr11 112219320 112219714 -9624142 - MTA_Mm LTR MaLR 0 396 1 4 1441 730 181 21 28 chr11 112219725 112219867 -9623989 + ORR1B1 LTR MaLR 49 189 -205 4 1441 2331 234 77 50 chr11 112219849 112220516 -9623340 - RMER13A LTR ERVK -175 685 1 4 1441 1299 180 22 4 chr11 112220531 112220760 -9623096 + ORR1B1 LTR MaLR 160 392 -2 4 1441 556 151 22 18 chr11 112220761 112220986 -9622870 + (TA)n Simple_repeat Simple_repeat 1 225 0 4 1441 202 121 83 33 chr11 112221497 112221557 -9622299 + T-rich Low_complexity Low_complexity 3 65 0 4 1441 251 275 9 44 chr11 112221694 112221808 -9622048 + GA-rich Low_complexity Low_complexity 1 110 0 4 1441 309 272 0 69 chr11 112223475 112223503 -9620353 + ID SINE ID 61 82 -142 4 1441 349 205 113 97 chr11 112223503 112223627 -9620229 + B1F1 SINE Alu 3 128 -21 4 1441 246 302 84 56 chr11 112223574 112223753 -9620103 - RMER10B LTR ERVL -22 376 193 4 1441 323 344 92 0 chr11 112224048 112224179 -9619677 + ID_B1 SINE B4 10 152 -72 4 1441 817 256 78 0 chr11 112224183 112224374 -9619482 + B3 SINE B2 2 207 -9 4 1441 270 81 0 0 chr11 112224394 112224431 -9619425 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1441 242 286 0 61 chr11 112224440 112224522 -9619334 + ID_B1 SINE B4 140 216 -8 4 1441 2750 3 0 0 chr11 112226912 112227199 -9616657 - L1Md_A LINE L1 0 6582 6296 4 1441 376 240 40 40 chr11 112227404 112227504 -9616352 + B4 SINE B4 166 265 -27 4 1441 267 253 119 12 chr11 112228768 112228852 -9615004 - MER58A DNA MER1_type -76 148 56 4 1441 761 263 129 20 chr11 112228870 112229118 -9614738 + B4 SINE B4 1 275 -17 4 1441 291 122 0 0 chr11 112229124 112229173 -9614683 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1441 220 276 0 22 chr11 112229564 112229653 -9614203 + T-rich Low_complexity Low_complexity 3 89 0 4 1441 261 232 36 0 chr11 112230249 112230305 -9613551 - B4 SINE B4 -10 282 225 4 1441 658 0 24 0 chr11 112230305 112230387 -9613469 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 4 1441 307 244 276 35 chr11 112230473 112230647 -9613209 - B3 SINE B2 0 216 1 4 1441 254 250 50 0 chr11 112230752 112230812 -9613044 - L1M5 LINE L1 -459 5665 5603 4 1441 895 258 159 27 chr11 112231570 112231662 -9612194 + MTD LTR MaLR 1 99 -320 4 1441 429 20 0 0 chr11 112231662 112231712 -9612144 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1441 895 258 159 27 chr11 112231712 112231989 -9611867 + MTD LTR MaLR 100 419 0 4 1441 837 320 40 0 chr11 112233619 112233841 -9610015 + B4A SINE B4 3 233 -59 4 1441 942 246 16 54 chr11 112233851 112234109 -9609747 + Lx9 LINE L1 6832 7079 -565 4 1441 437 0 19 0 chr11 112234109 112234162 -9609694 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 4 1441 321 118 0 0 chr11 112234162 112234212 -9609644 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1441 358 266 43 34 chr11 112234262 112234379 -9609477 + Lx9 LINE L1 7353 7470 -174 4 1441 426 39 0 0 chr11 112234393 112234445 -9609411 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1441 260 174 62 115 chr11 112234446 112234576 -9609280 + Lx9 LINE L1 7517 7639 -5 4 1441 262 266 25 0 chr11 112234673 112234752 -9609104 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 1441 230 228 0 0 chr11 112234719 112234776 -9609080 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 4 1441 338 281 146 15 chr11 112234807 112234937 -9608919 + B1F SINE Alu 3 149 0 4 1441 257 313 15 0 chr11 112234954 112235021 -9608835 + ID4_ SINE ID 5 72 -11 4 1441 768 295 140 48 chr11 112235154 112235446 -9608410 + MTE2b LTR MaLR 45 363 -16 4 1441 217 271 34 0 chr11 112235547 112235606 -9608250 - MIRb SINE MIR -185 83 23 4 1441 485 250 19 0 chr11 112235786 112235894 -9607962 - B3A SINE B2 -88 110 1 4 1441 257 320 92 6 chr11 112235962 112236135 -9607721 + L1MC LINE L1 4005 4192 -1954 4 1441 740 239 136 0 chr11 112236614 112236798 -9607058 + B3 SINE B2 8 216 0 4 1441 465 293 30 95 chr11 112237746 112237946 -9605910 - ID_B1 SINE B4 -28 196 10 4 1441 12261 19 0 0 chr11 112238190 112239583 -9604273 - L1Md_T LINE L1 -842 5041 3649 4 1441 5085 16 0 0 chr11 112239580 112240153 -9603703 + L1Md_T LINE L1 5014 5586 -297 4 1441 9613 4 0 0 chr11 112240153 112241189 -9602667 + L1Md_T LINE L1 5587 6582 0 4 1441 930 148 23 8 chr11 112241402 112241645 -9602211 + CT-rich Low_complexity Low_complexity 1 246 0 4 1441 1193 270 109 11 chr11 112242850 112243225 -9600631 + MTD LTR MaLR 8 419 0 4 1441 216 0 0 0 chr11 112243802 112243826 -9600030 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1441 12610 65 0 3 chr11 112243829 112246108 -9597748 - L1Md_F2 LINE L1 0 6582 4311 4 1441 534 118 0 0 chr11 112246653 112246746 -9597110 + (TC)n Simple_repeat Simple_repeat 1 93 0 4 1441 438 20 0 0 chr11 112246761 112246812 -9597044 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1441 2455 190 77 6 chr11 112246917 112247145 -9596711 + RMER19B LTR ERVK 12 238 -664 4 1441 414 0 0 0 chr11 112247145 112247191 -9596665 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1441 2455 170 209 23 chr11 112247191 112247735 -9596121 + RMER19B LTR ERVK 239 902 0 4 1441 683 304 65 50 chr11 112247735 112247993 -9595863 - B4A SINE B4 -29 263 2 4 1441 779 282 85 23 chr11 112248926 112249184 -9594672 - B4A SINE B4 -17 275 2 4 1441 1250 62 7 0 chr11 112249850 112249996 -9593860 + B1_Mm SINE Alu 1 147 0 4 1441 425 347 180 47 chr11 112250199 112250477 -9593379 - LTR16A LTR ERVL -8 443 129 4 1441 377 328 24 16 chr11 112252131 112252258 -9591598 - B1F SINE Alu -21 128 1 4 1441 851 322 88 35 chr11 112253877 112254389 -9589467 - Lx8 LINE L1 -2 7471 6933 4 1441 1543 286 46 72 chr11 112254401 112255113 -9588743 + L1_Mur3 LINE L1 4899 5592 -288 4 1441 288 0 0 0 chr11 112255530 112255562 -9588294 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1441 336 260 109 10 chr11 112255610 112255711 -9588145 + B3 SINE B2 4 114 -102 4 1441 253 216 27 13 chr11 112256634 112256709 -9587147 + L1M5 LINE L1 5796 5871 -253 4 1441 1374 311 61 38 chr11 112257156 112257492 -9586364 - ERVL-B4-int LTR ERVL -475 5239 4897 4 1441 183 80 0 0 chr11 112257492 112257517 -9586339 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1441 1374 311 61 38 chr11 112257517 112257815 -9586041 - ERVL-B4-int LTR ERVL -818 4896 4590 4 1441 561 302 9 126 chr11 112257828 112258059 -9585797 + ID_B1 SINE B4 19 222 -2 4 1441 212 59 29 0 chr11 112258265 112258299 -9585557 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 4 1441 286 149 0 0 chr11 112258317 112258367 -9585489 + Lx4A LINE L1 6670 6735 -323 4 1441 516 184 10 0 chr11 112258369 112258472 -9585384 + Lx4A LINE L1 6948 7051 -7 4 1441 286 23 47 0 chr11 112258475 112258518 -9585338 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1441 352 322 20 37 chr11 112258524 112258742 -9585114 + L1M3 LINE L1 3966 4174 -1972 4 1441 1145 103 0 14 chr11 112258742 112258889 -9584967 + B1_Mus2 SINE Alu 1 145 -2 4 1441 323 343 11 132 chr11 112258889 112258909 -9584947 + L1M3 LINE L1 4175 4187 -1959 4 1441 801 0 0 0 chr11 112258909 112258998 -9584858 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 4 1441 323 343 11 132 chr11 112258998 112259048 -9584808 + L1M3 LINE L1 4188 4212 -1934 4 1441 1377 176 60 143 chr11 112259048 112259467 -9584389 + ORR1C2 LTR MaLR 1 384 0 4 1441 323 343 11 132 chr11 112259467 112259616 -9584240 + L1M3 LINE L1 4213 4352 -1794 4 1441 660 257 175 0 chr11 112259678 112259861 -9583995 - B3 SINE B2 0 216 2 4 1441 588 297 180 17 chr11 112260624 112260818 -9583038 + B4A SINE B4 2 219 -73 4 1441 477 0 0 0 chr11 112260818 112260871 -9582985 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1441 588 297 180 17 chr11 112260871 112260909 -9582947 + B4A SINE B4 220 271 -21 4 1441 423 56 0 0 chr11 112261355 112261409 -9582447 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1441 225 0 0 0 chr11 112261909 112261934 -9581922 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1441 363 141 0 0 chr11 112261941 112262005 -9581851 + (TGG)n Simple_repeat Simple_repeat 1 64 0 4 1441 258 176 0 0 chr11 112262030 112262081 -9581775 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1441 204 122 0 0 chr11 112262293 112262334 -9581522 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1441 554 306 13 13 chr11 112262549 112262698 -9581158 - B1F SINE Alu 0 149 1 4 1441 591 15 0 0 chr11 112262839 112262907 -9580949 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1441 589 304 6 0 chr11 112263404 112263562 -9580294 - RSINE1 SINE B4 -4 161 3 4 1441 380 312 140 27 chr11 112264072 112264293 -9579563 - LTR85b LTR Gypsy? -10 774 529 4 1441 819 55 0 0 chr11 112264467 112264576 -9579280 + (TC)n Simple_repeat Simple_repeat 1 109 0 4 1441 1774 197 44 24 chr11 112265021 112265448 -9578408 + Lx2B LINE L1 6530 7009 0 4 1441 2867 71 18 16 chr11 112265823 112266210 -9577646 + L1_Mus3 LINE L1 6251 6638 0 4 1441 855 217 172 0 chr11 112266333 112266513 -9577343 + B3 SINE B2 1 211 -5 4 1441 217 140 17 34 chr11 112266514 112266573 -9577283 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 4 1441 583 278 114 31 chr11 112266917 112267110 -9576746 + B4 SINE B4 1 209 -83 4 1441 228 67 0 0 chr11 112267117 112267147 -9576709 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 4 1441 378 0 0 0 chr11 112267280 112267322 -9576534 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1441 192 125 0 0 chr11 112267546 112267578 -9576278 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1441 732 231 44 50 chr11 112267578 112267760 -9576096 - B3A SINE B2 -16 182 2 4 1441 268 339 48 32 chr11 112267895 112268020 -9575836 + L2b LINE L2 3249 3424 -2 4 1441 1151 203 34 4 chr11 112268787 112269024 -9574832 - ORR1C2 LTR MaLR 0 384 141 4 1441 1818 219 40 154 chr11 112269019 112269662 -9574194 - RMER19C LTR ERVK -41 570 1 4 1441 674 169 0 8 chr11 112269662 112269785 -9574071 - ORR1C2 LTR MaLR -262 122 1 4 1441 2050 290 58 8 chr11 112271260 112271913 -9571943 - Lx8 LINE L1 -331 7142 6457 4 1441 1034 299 146 29 chr11 112272106 112272959 -9570897 - L1MB8 LINE L1 -2 6176 5226 4 1441 339 25 0 0 chr11 112273126 112273166 -9570690 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1441 318 26 0 0 chr11 112275174 112275213 -9568643 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1441 396 0 0 0 chr11 112275738 112275782 -9568074 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1441 242 214 0 0 chr11 112275876 112275932 -9567924 + T-rich Low_complexity Low_complexity 3 58 0 5 1441 735 307 5 11 chr11 112275942 112276133 -9567723 - B3A SINE B2 -8 190 1 5 1441 530 328 95 21 chr11 112276148 112276338 -9567518 - B4 SINE B4 -69 223 20 5 1441 1067 270 34 41 chr11 112276345 112276750 -9567106 + MTE2a LTR MaLR 9 405 -14 5 1441 343 330 15 59 chr11 112277816 112278019 -9565837 + MTE2b LTR MaLR 4 197 -182 5 1441 219 130 36 18 chr11 112278019 112278074 -9565782 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 5 1441 465 34 0 0 chr11 112278076 112278135 -9565721 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 5 1441 263 328 16 49 chr11 112278135 112278257 -9565599 + MTE2b LTR MaLR 210 327 -52 5 1441 1918 278 70 2 chr11 112278299 112278839 -9565017 - Lx8 LINE L1 -569 6904 6328 5 1441 456 307 8 0 chr11 112278905 112279032 -9564824 - B1F2 SINE Alu -8 141 14 5 1441 546 43 0 0 chr11 112279295 112279364 -9564492 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1441 566 295 85 23 chr11 112280057 112280317 -9563539 + B4A SINE B4 5 280 -12 5 1441 364 310 17 17 chr11 112281355 112281473 -9562383 - RSINE1 SINE B4 0 165 48 5 1441 181 352 0 0 chr11 112281720 112281791 -9562065 - MIRb SINE MIR -92 176 106 5 1441 395 83 0 16 chr11 112283104 112283165 -9560691 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 5 1441 267 152 0 0 chr11 112283166 112283212 -9560644 + (TGAG)n Simple_repeat Simple_repeat 3 48 0 5 1441 486 0 0 0 chr11 112283820 112283874 -9559982 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1441 560 328 17 6 chr11 112284851 112285032 -9558824 - ID_B1 SINE B4 -36 188 6 5 1441 192 125 134 45 chr11 112285035 112285102 -9558754 - MIR3 SINE MIR -54 154 82 5 1441 339 368 29 6 chr11 112285220 112285395 -9558461 + MER58B DNA MER1_type 1 179 -162 5 1441 758 342 11 11 chr11 112285633 112285899 -9557957 + B4A SINE B4 1 266 -26 5 1441 251 104 21 0 chr11 112285917 112285965 -9557891 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1441 252 0 0 0 chr11 112286946 112286974 -9556882 + (TA)n Simple_repeat Simple_repeat 1 28 0 5 1441 581 191 241 20 chr11 112287372 112287575 -9556281 - Lx7 LINE L1 -2 7694 7447 5 1441 634 250 0 0 chr11 112287630 112287766 -9556090 + ORR1E LTR MaLR 1 136 -223 5 1441 411 320 63 39 chr11 112288144 112288349 -9555507 + MER63A DNA AcHobo 1 210 0 5 1441 683 104 9 0 chr11 112290132 112290238 -9553618 + (TC)n Simple_repeat Simple_repeat 1 107 0 5 1441 2804 31 2 186 chr11 112291263 112291741 -9552115 - RLTR10 LTR ERVK 0 390 1 5 1441 8857 20 5 1 chr11 112291743 112292734 -9551122 - RLTR10-int LTR ERVK -3 1984 990 5 1441 393 224 62 39 chr11 112292816 112292946 -9550910 - RLTR10-int LTR ERVK -5987 1594 1462 5 1441 5117 34 16 2 chr11 112293010 112294025 -9549831 - RLTR10-int LTR ERVK -989 998 41 5 1441 2804 31 2 186 chr11 112294035 112294513 -9549343 - RLTR10 LTR ERVK 0 390 1 5 1441 556 299 24 30 chr11 112295896 112296081 -9547775 + B3A SINE B2 1 175 -41 5 1441 1349 75 17 0 chr11 112296081 112296255 -9547601 + B2_Mm2 SINE B2 1 177 -18 5 1441 422 305 26 79 chr11 112296255 112296297 -9547559 + B3 SINE B2 176 216 0 5 1441 1261 205 84 0 chr11 112296348 112296621 -9547235 - Lx5 LINE L1 0 7050 6755 5 1441 2832 205 13 19 chr11 112296613 112297136 -9546720 + Lx5 LINE L1 6390 6909 -141 5 1441 1000 248 129 57 chr11 112297509 112297842 -9546014 - ORR1D2 LTR MaLR -5 365 9 5 1441 192 97 0 0 chr11 112298134 112298165 -9545691 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1441 786 176 0 0 chr11 112298165 112298318 -9545538 + (TA)n Simple_repeat Simple_repeat 2 154 0 5 1441 216 0 0 0 chr11 112298318 112298342 -9545514 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1441 501 17 0 0 chr11 112299104 112299162 -9544694 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1441 691 262 7 26 chr11 112300250 112300403 -9543453 + RSINE1 SINE B4 16 165 0 5 1441 555 43 0 0 chr11 112300405 112300475 -9543381 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 5 1441 464 294 109 58 chr11 112300805 112301080 -9542776 + Lx8 LINE L1 7177 7465 -8 5 1441 590 265 23 3 chr11 112301257 112301462 -9542394 - L1MA8 LINE L1 -110 6073 5857 5 1441 228 233 0 0 chr11 112301502 112301575 -9542281 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1441 501 358 51 0 chr11 112301593 112301769 -9542087 - ID_B1 SINE B4 -35 189 5 5 1441 254 278 26 53 chr11 112301777 112301891 -9541965 - L1MA8 LINE L1 -508 5783 5673 5 1441 360 0 0 0 chr11 112301909 112301949 -9541907 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 5 1441 495 211 19 0 chr11 112301963 112302119 -9541737 + (TA)n Simple_repeat Simple_repeat 1 159 0 5 1441 351 0 0 0 chr11 112302449 112302488 -9541368 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1441 235 351 76 18 chr11 112303570 112303741 -9540115 + MIRb SINE MIR 41 221 -47 5 1441 542 310 4 86 chr11 112304539 112304772 -9539084 - ID_B1 SINE B4 -6 218 5 5 1441 312 258 234 19 chr11 112304777 112304931 -9538925 - L1MEb LINE L1 -5520 550 364 5 1441 486 0 0 0 chr11 112305006 112305060 -9538796 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1441 262 173 13 13 chr11 112306019 112306095 -9537761 + GA-rich Low_complexity Low_complexity 1 76 0 5 1441 450 0 0 0 chr11 112306113 112306163 -9537693 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 5 1441 230 0 0 32 chr11 112306305 112306336 -9537520 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5 1441 385 291 43 0 chr11 112306608 112306725 -9537131 - B1F SINE Alu -17 132 11 5 1441 832 93 8 0 chr11 112306831 112306949 -9536907 + B1_Mm SINE Alu 29 147 0 5 1441 480 111 0 0 chr11 112306979 112307051 -9536805 + (GGAAA)n Simple_repeat Simple_repeat 2 73 0 5 1441 980 100 13 0 chr11 112307051 112307201 -9536655 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 5 1441 273 257 13 13 chr11 112307878 112307953 -9535903 + CT-rich Low_complexity Low_complexity 1 75 0 5 1441 342 0 0 0 chr11 112308010 112308048 -9535808 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1441 398 313 12 1 chr11 112308739 112308854 -9535002 + MTEa LTR MaLR 16 131 -248 5 1441 957 127 98 0 chr11 112308861 112309032 -9534824 + RLTR15 LTR ERVK 1 188 -171 5 1441 1369 86 0 5 chr11 112309032 112309231 -9534625 - MTB LTR MaLR 0 400 203 5 1441 336 94 38 0 chr11 112309225 112309278 -9534578 - MTB-int LTR MaLR -1043 55 1 5 1441 1367 82 0 5 chr11 112309278 112309475 -9534381 - MTB LTR MaLR 0 400 205 5 1441 703 180 93 6 chr11 112309481 112309643 -9534213 + RLTR15 LTR ERVK 184 359 0 5 1441 755 232 42 18 chr11 112309643 112309842 -9534014 + MTEa LTR MaLR 136 337 -42 5 1441 848 278 10 10 chr11 112310119 112310326 -9533530 + B3 SINE B2 8 214 -2 5 1441 2233 61 14 0 chr11 112310486 112310766 -9533090 + L1_Mus1 LINE L1 6284 6567 0 5 1441 606 89 0 0 chr11 112310854 112310944 -9532912 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1441 825 292 8 40 chr11 112311022 112311275 -9532581 - B4A SINE B4 -46 246 2 5 1441 629 269 160 5 chr11 112312120 112312314 -9531542 + ID_B1 SINE B4 1 224 0 5 1441 478 275 147 42 chr11 112312527 112312717 -9531139 + ID_B1 SINE B4 1 210 -14 5 1441 360 0 0 0 chr11 112312730 112312770 -9531086 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 5 1441 914 148 0 6 chr11 112312772 112312935 -9530921 + (CGGA)n Simple_repeat Simple_repeat 3 164 0 5 1441 306 0 0 0 chr11 112312935 112312969 -9530887 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 5 1441 1182 112 12 0 chr11 112313521 112313691 -9530165 - B2_Mm2 SINE B2 -19 176 5 5 1441 375 23 0 0 chr11 112315011 112315055 -9528801 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1441 984 223 14 19 chr11 112315411 112315621 -9528235 - B3 SINE B2 -6 210 2 5 1441 626 326 42 4 chr11 112317027 112317286 -9526570 + B4A SINE B4 5 273 -19 5 1441 22 0 0 0 chr11 112317719 112317741 -9526115 + AT_rich Low_complexity Low_complexity 1 22 0 5 1441 1255 41 0 0 chr11 112317744 112317890 -9525966 + B1_Mus1 SINE Alu 2 147 -1 5 1441 256 117 65 0 chr11 112318028 112318105 -9525751 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1441 640 189 38 22 chr11 112318113 112318297 -9525559 + Lx9 LINE L1 7458 7644 0 5 1441 501 279 43 0 chr11 112318557 112318697 -9525159 + Lx8 LINE L1 6677 6822 -651 5 1441 306 67 0 0 chr11 112318708 112318753 -9525103 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 5 1441 325 331 16 0 chr11 112319204 112319331 -9524525 + B4 SINE B4 3 131 -161 5 1441 597 185 21 36 chr11 112319396 112319536 -9524320 - B1_Mur2 SINE Alu -1 148 11 5 1441 199 72 23 23 chr11 112320540 112320583 -9523273 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 5 1441 407 235 57 29 chr11 112320787 112320892 -9522964 - B1F SINE Alu -34 115 8 5 1441 2528 37 12 15 chr11 112320975 112321302 -9522554 - L1Md_F3 LINE L1 0 6584 6259 5 1441 681 290 30 90 chr11 112322186 112322485 -9521371 + B4 SINE B4 4 284 -8 5 1441 336 148 0 0 chr11 112322501 112322562 -9521294 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1441 258 320 38 60 chr11 112323327 112323460 -9520396 - B4A SINE B4 0 292 163 5 1441 249 324 14 0 chr11 112323507 112323578 -9520278 - B4A SINE B4 -220 72 1 5 1441 25 0 0 0 chr11 112324367 112324392 -9519464 + AT_rich Low_complexity Low_complexity 1 25 0 5 1441 373 256 72 84 chr11 112324847 112325013 -9518843 + B4A SINE B4 1 164 -128 5 1441 1566 287 140 32 chr11 112325537 112326215 -9517641 + Lx8 LINE L1 6722 7472 -1 5 1441 447 144 0 0 chr11 112326271 112326323 -9517533 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1441 333 0 0 0 chr11 112326323 112326360 -9517496 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1441 447 144 0 0 chr11 112326360 112326397 -9517459 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1441 931 254 157 9 chr11 112326505 112326855 -9517001 - MTD LTR MaLR 0 419 18 5 1441 925 264 8 58 chr11 112327282 112327340 -9516516 + B4 SINE B4 40 91 -201 5 1441 198 0 0 0 chr11 112327340 112327362 -9516494 + (CAG)n Simple_repeat Simple_repeat 1 22 0 5 1441 925 264 8 58 chr11 112327362 112327564 -9516292 + B4 SINE B4 92 287 -5 5 1441 261 0 0 0 chr11 112327608 112327637 -9516219 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1441 1213 244 59 28 chr11 112327757 112328112 -9515744 + MTE2b LTR MaLR 12 377 -2 6 1442 964 263 34 45 chr11 112328709 112329000 -9514856 + B4 SINE B4 3 290 -2 6 1442 468 0 0 0 chr11 112329005 112329057 -9514799 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1442 1383 259 52 0 chr11 112329068 112329412 -9514444 + ORR1D2 LTR MaLR 1 362 -8 6 1442 513 0 0 0 chr11 112329449 112329506 -9514350 + (TTA)n Simple_repeat Simple_repeat 1 57 0 6 1442 375 343 22 0 chr11 112330391 112330528 -9513328 + RSINE1 SINE B4 2 141 -24 6 1442 222 37 0 0 chr11 112330532 112330559 -9513297 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 6 1442 468 0 0 0 chr11 112330569 112330621 -9513235 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 6 1442 423 0 0 0 chr11 112330655 112330702 -9513154 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1442 277 297 50 9 chr11 112331180 112331285 -9512571 + MTE2a LTR MaLR 54 177 -242 6 1442 630 240 27 14 chr11 112331287 112331435 -9512421 + B4A SINE B4 133 282 -10 6 1442 432 0 0 0 chr11 112331440 112331488 -9512368 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1442 184 268 0 0 chr11 112331667 112331708 -9512148 + MIRb SINE MIR 219 259 -9 6 1442 297 222 31 93 chr11 112332341 112332470 -9511386 - Lx8 LINE L1 0 7473 7353 6 1442 941 112 5 33 chr11 112332498 112332682 -9511174 + CT-rich Low_complexity Low_complexity 1 179 0 6 1442 323 342 33 26 chr11 112332756 112332909 -9510947 - Lx8 LINE L1 -341 7132 6979 6 1442 925 255 32 28 chr11 112332955 112333173 -9510683 + B4 SINE B4 11 229 -63 6 1442 735 291 69 27 chr11 112333175 112333436 -9510420 + B4A SINE B4 5 276 -16 6 1442 248 80 60 0 chr11 112333597 112333647 -9510209 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 6 1442 701 299 33 44 chr11 112335083 112335353 -9508503 + B4A SINE B4 5 271 -21 6 1442 393 291 0 27 chr11 112335438 112335547 -9508309 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1442 381 123 0 0 chr11 112335547 112335612 -9508244 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 6 1442 393 288 4 29 chr11 112335612 112335778 -9508078 + (TA)n Simple_repeat Simple_repeat 1 161 0 6 1442 432 0 0 0 chr11 112335785 112335833 -9508023 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 6 1442 184 260 80 0 chr11 112335915 112335965 -9507891 + MIRb SINE MIR 201 254 -14 6 1442 199 184 3 46 chr11 112335924 112335975 -9507881 + L2a LINE L2 3328 3416 -10 6 1442 445 312 226 11 chr11 112335983 112336249 -9507607 - MER2 DNA MER2_type -5 340 18 6 1442 518 274 19 7 chr11 112336949 112337103 -9506753 + B4A SINE B4 14 169 -123 6 1442 22 70 0 0 chr11 112337772 112337815 -9506041 + AT_rich Low_complexity Low_complexity 1 43 0 6 1442 561 170 0 0 chr11 112338053 112338165 -9505691 + (CA)n Simple_repeat Simple_repeat 1 112 0 6 1442 304 290 0 0 chr11 112338990 112339059 -9504797 + B4 SINE B4 2 70 -222 6 1442 324 175 0 0 chr11 112339119 112339182 -9504674 + (TATG)n Simple_repeat Simple_repeat 2 64 0 6 1442 222 207 0 0 chr11 112339172 112339230 -9504626 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 6 1442 301 311 14 29 chr11 112339485 112339624 -9504232 - MIRb SINE MIR -59 209 73 6 1442 225 132 0 0 chr11 112340705 112340743 -9503113 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1442 531 112 0 0 chr11 112341394 112341474 -9502382 + (T)n Simple_repeat Simple_repeat 1 80 0 6 1442 558 0 0 0 chr11 112343392 112343454 -9500402 + (TAAAA)n Simple_repeat Simple_repeat 1 62 0 6 1442 1529 197 106 12 chr11 112344502 112344841 -9499015 + ORR1D1 LTR MaLR 1 371 -3 6 1442 245 253 62 12 chr11 112344963 112345043 -9498813 + MTE2b LTR MaLR 296 379 0 6 1442 258 211 0 0 chr11 112345132 112345184 -9498672 - MT2A LTR ERVL -481 52 1 6 1442 23 0 0 0 chr11 112345357 112345380 -9498476 + AT_rich Low_complexity Low_complexity 1 23 0 6 1442 1700 198 125 79 chr11 112346427 112346931 -9496925 + Lx7 LINE L1 6893 7419 -277 6 1442 222 37 0 0 chr11 112346950 112346977 -9496879 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1442 228 86 0 0 chr11 112347003 112347038 -9496818 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1442 324 269 44 44 chr11 112347057 112347193 -9496663 + Lx7 LINE L1 7559 7694 -2 6 1442 2966 61 71 3 chr11 112347224 112347604 -9496252 + MTB_Mm LTR MaLR 1 406 -1 6 1442 306 221 41 31 chr11 112348146 112348244 -9495612 + (TCCA)n Simple_repeat Simple_repeat 4 102 0 6 1442 351 199 40 23 chr11 112348263 112348438 -9495418 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 1442 822 308 168 10 chr11 112348464 112348858 -9494998 - MLT2B1 LTR ERVL -64 456 1 6 1442 257 312 0 36 chr11 112349170 112349253 -9494603 - B4 SINE B4 0 292 213 6 1442 224 79 0 50 chr11 112349254 112349294 -9494562 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 6 1442 406 256 279 6 chr11 112349310 112349471 -9494385 - B4 SINE B4 -87 205 1 6 1442 234 321 0 74 chr11 112349678 112349799 -9494057 + MER94 DNA AcHobo 20 131 -3 6 1442 420 261 54 0 chr11 112349887 112349998 -9493858 + Lx8 LINE L1 6969 7085 -388 6 1442 716 264 83 80 chr11 112350038 112350339 -9493517 + Lx8 LINE L1 7170 7471 -2 6 1442 423 0 0 0 chr11 112351035 112351082 -9492774 + (TTA)n Simple_repeat Simple_repeat 2 48 0 6 1442 655 108 10 0 chr11 112351532 112351634 -9492222 + URR1B DNA MER1_type 123 225 0 6 1442 700 229 86 106 chr11 112351635 112352000 -9491856 - MT2A LTR ERVL -17 584 96 6 1442 304 266 0 12 chr11 112352036 112352116 -9491740 - MT2A LTR ERVL -405 128 50 6 1442 202 56 27 27 chr11 112352661 112352698 -9491158 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 6 1442 533 226 0 57 chr11 112352707 112352829 -9491027 - B1_Mm SINE Alu -32 115 1 6 1442 306 276 78 16 chr11 112352840 112352969 -9490887 + MIRb SINE MIR 117 253 -15 6 1442 321 26 0 0 chr11 112353216 112353254 -9490602 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 6 1442 270 262 0 0 chr11 112354477 112354561 -9489295 + (CA)n Simple_repeat Simple_repeat 2 85 0 6 1442 278 311 135 10 chr11 112355254 112355358 -9488498 + B3A SINE B2 1 117 -81 6 1442 21 57 0 0 chr11 112356619 112356654 -9487202 + AT_rich Low_complexity Low_complexity 1 35 0 6 1442 1308 241 56 93 chr11 112358446 112358949 -9484907 + RMER19C LTR ERVK 128 611 0 6 1442 2869 71 74 3 chr11 112359382 112359762 -9484094 + MTB_Mm LTR MaLR 1 407 0 6 1442 2386 173 41 5 chr11 112360253 112360671 -9483185 + Lx5 LINE L1 6615 7047 -3 6 1442 515 335 6 6 chr11 112360901 112361060 -9482796 + B4A SINE B4 1 159 -133 6 1442 665 192 36 43 chr11 112361045 112361205 -9482651 + ORR1D2 LTR MaLR 25 183 -191 6 1442 193 131 43 21 chr11 112361205 112361252 -9482604 + CT-rich Low_complexity Low_complexity 6 53 0 6 1442 658 250 47 14 chr11 112361260 112361471 -9482385 + ORR1D2 LTR MaLR 149 366 -4 6 1442 417 306 40 0 chr11 112361586 112361710 -9482146 + ORR1E LTR MaLR 1 129 -230 6 1442 248 295 0 0 chr11 112362558 112362619 -9481237 + ID4_ SINE ID 9 69 -14 6 1442 1044 138 137 5 chr11 112364243 112364440 -9479416 - URR1A DNA MER1_type -3 223 1 6 1442 422 18 18 0 chr11 112364557 112364612 -9479244 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1442 392 97 0 16 chr11 112364618 112364681 -9479175 + (GGA)n Simple_repeat Simple_repeat 1 62 0 6 1442 285 29 0 0 chr11 112365187 112365221 -9478635 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1442 2980 221 142 19 chr11 112365247 112366002 -9477854 - Lx9 LINE L1 -161 7483 6636 6 1442 429 352 23 0 chr11 112366067 112366243 -9477613 + B3A SINE B2 1 180 -18 6 1442 2236 79 3 3 chr11 112366979 112367298 -9476558 - ORR1A2 LTR MaLR -8 319 1 6 1442 298 317 24 32 chr11 112367378 112367502 -9476354 - B4A SINE B4 -93 199 77 6 1442 307 230 13 26 chr11 112367658 112367734 -9476122 + ID4_ SINE ID 9 83 0 6 1442 336 83 0 0 chr11 112368227 112368275 -9475581 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1442 450 0 0 0 chr11 112369332 112369382 -9474474 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1442 632 167 0 32 chr11 112370014 112370200 -9473656 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1442 246 281 85 0 chr11 112370250 112370332 -9473524 + MER20 DNA MER1_type 126 214 -5 6 1442 568 281 22 22 chr11 112370707 112370889 -9472967 + B3A SINE B2 1 182 -16 6 1442 801 217 120 0 chr11 112370925 112371100 -9472756 + B3 SINE B2 2 197 -19 6 1442 2063 155 22 47 chr11 112371103 112371614 -9472242 + RLTR31_Mm LTR ERVK 4 440 -144 6 1442 31 26 0 0 chr11 112371692 112371730 -9472126 + AT_rich Low_complexity Low_complexity 1 38 0 6 1442 616 226 68 0 chr11 112371760 112371893 -9471963 - B1_Mur1 SINE Alu -6 143 2 6 1442 226 278 0 143 chr11 112374329 112374413 -9469443 + B1F1 SINE Alu 32 103 -46 6 1442 477 0 0 0 chr11 112374494 112374547 -9469309 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1442 519 327 0 19 chr11 112374549 112374708 -9469148 - B3A SINE B2 -42 156 1 6 1442 239 225 48 48 chr11 112375336 112375420 -9468436 - L1M2 LINE L1 -609 5682 5599 6 1442 1330 237 107 12 chr11 112375472 112375809 -9468047 + ORR1D2 LTR MaLR 1 369 -1 6 1442 228 135 0 0 chr11 112375921 112375958 -9467898 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1442 1702 85 0 0 chr11 112375993 112376217 -9467639 - L1_Mus2 LINE L1 -1 6565 6342 6 1442 1240 85 6 6 chr11 112376217 112376383 -9467473 + L1_Mus2 LINE L1 6199 6364 -202 6 1442 189 107 0 0 chr11 112376385 112376413 -9467443 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1442 1096 116 0 0 chr11 112376413 112376560 -9467296 - B1_Mus1 SINE Alu 0 148 2 6 1442 450 256 2 1 chr11 112376569 112376716 -9467140 - L1_Mm LINE L1 -948 5496 5349 6 1442 1030 200 19 5 chr11 112377324 112377535 -9466321 - B3 SINE B2 0 216 3 6 1442 676 273 0 0 chr11 112377642 112377785 -9466071 + B3A SINE B2 3 145 -53 6 1442 25 31 0 0 chr11 112377785 112377817 -9466039 + AT_rich Low_complexity Low_complexity 1 32 0 7 1442 685 272 42 59 chr11 112377914 112378203 -9465653 - MER2 DNA MER2_type -55 290 7 7 1442 991 197 23 33 chr11 112378746 112378961 -9464895 + B3 SINE B2 3 215 -1 7 1442 222 321 34 56 chr11 112379088 112379177 -9464679 + RSINE1 SINE B4 79 165 0 7 1442 207 139 0 0 chr11 112379191 112379227 -9464629 + (TAA)n Simple_repeat Simple_repeat 2 37 0 7 1442 186 133 0 0 chr11 112380096 112380126 -9463730 + (TTA)n Simple_repeat Simple_repeat 2 31 0 7 1442 459 0 0 0 chr11 112380177 112380228 -9463628 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1442 255 227 0 0 chr11 112380935 112381001 -9462855 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 7 1442 944 240 70 18 chr11 112381166 112381438 -9462418 - Lx8 LINE L1 -198 7275 6990 7 1442 958 272 27 34 chr11 112382108 112382401 -9461455 + B4 SINE B4 2 292 0 7 1442 198 0 0 0 chr11 112382441 112382463 -9461393 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1442 983 196 10 21 chr11 112382469 112382662 -9461194 + B3 SINE B2 24 214 -2 7 1442 665 68 8 48 chr11 112383119 112383243 -9460613 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 7 1442 270 183 21 31 chr11 112383412 112383508 -9460348 + GA-rich Low_complexity Low_complexity 1 95 0 7 1442 1058 76 29 11 chr11 112383522 112383696 -9460160 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 7 1442 209 33 0 32 chr11 112384240 112384271 -9459585 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1442 22 0 0 0 chr11 112384474 112384496 -9459360 + AT_rich Low_complexity Low_complexity 1 22 0 7 1442 187 304 53 11 chr11 112385285 112385372 -9458484 - MIR SINE MIR -98 164 80 7 1442 281 323 28 128 chr11 112385764 112385984 -9457872 - B4 SINE B4 -5 287 90 7 1442 265 271 37 111 chr11 112386000 112386108 -9457748 - B4 SINE B4 -192 100 1 7 1442 836 257 10 29 chr11 112386419 112386627 -9457229 - B3 SINE B2 -9 207 4 7 1442 577 261 105 11 chr11 112387160 112387350 -9456506 + B3 SINE B2 4 211 -5 7 1442 622 280 28 9 chr11 112388685 112388876 -9454980 + B3A SINE B2 18 212 -4 7 1442 215 205 0 0 chr11 112389497 112389536 -9454320 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1442 612 206 0 0 chr11 112389762 112389893 -9453963 + CT-rich Low_complexity Low_complexity 2 132 0 7 1442 1014 259 98 6 chr11 112389986 112390301 -9453555 + MTEa LTR MaLR 1 344 -35 7 1442 237 65 0 0 chr11 112390709 112390740 -9453116 + (TGG)n Simple_repeat Simple_repeat 1 31 0 7 1442 340 317 17 0 chr11 112390907 112391027 -9452829 - B4A SINE B4 -163 129 8 7 1442 912 106 0 0 chr11 112391119 112391280 -9452576 + (GA)n Simple_repeat Simple_repeat 2 162 0 7 1442 309 89 0 0 chr11 112393988 112394033 -9449823 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 7 1442 653 329 9 32 chr11 112394037 112394257 -9449599 + ID_B1 SINE B4 10 224 0 7 1442 1691 209 33 8 chr11 112394526 112394887 -9448969 + ORR1D2 LTR MaLR 1 370 0 7 1442 663 268 0 26 chr11 112394954 112395107 -9448749 + RSINE1 SINE B4 3 151 -14 7 1442 380 20 0 20 chr11 112395115 112395165 -9448691 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 7 1442 309 337 0 10 chr11 112395260 112395359 -9448497 + MTE2b LTR MaLR 1 98 -281 7 1442 950 295 134 25 chr11 112395627 112396068 -9447788 - Lx8 LINE L1 -404 7069 6581 7 1442 360 0 0 0 chr11 112396101 112396141 -9447715 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7 1442 476 309 179 42 chr11 112396151 112396509 -9447347 - Lx8 LINE L1 -969 6504 6098 7 1442 356 333 48 61 chr11 112396787 112397081 -9446775 + B4A SINE B4 3 292 0 7 1442 1192 151 102 5 chr11 112397584 112397790 -9446066 + URR1A DNA MER1_type 1 226 0 7 1442 416 139 13 0 chr11 112398064 112398143 -9445713 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1442 805 304 50 32 chr11 112398149 112398431 -9445425 - B4 SINE B4 0 292 6 7 1442 222 37 0 0 chr11 112400241 112400268 -9443588 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1442 180 0 0 0 chr11 112400430 112400450 -9443406 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1442 183 129 0 0 chr11 112400727 112400758 -9443098 + (CAA)n Simple_repeat Simple_repeat 1 31 0 7 1442 946 210 128 20 chr11 112401963 112402260 -9441596 + MTD LTR MaLR 86 414 -5 7 1442 23 33 0 0 chr11 112402730 112402760 -9441096 + AT_rich Low_complexity Low_complexity 1 30 0 7 1442 501 62 0 0 chr11 112402905 112402970 -9440886 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1442 929 237 81 11 chr11 112402990 112403250 -9440606 - B4A SINE B4 -14 278 1 7 1442 182 105 26 0 chr11 112403333 112403371 -9440485 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1442 188 67 33 0 chr11 112403943 112403973 -9439883 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 7 1442 675 25 0 0 chr11 112404554 112404635 -9439221 + (TC)n Simple_repeat Simple_repeat 1 81 0 7 1442 706 296 49 33 chr11 112405194 112405512 -9438344 + ORR1E LTR MaLR 7 356 -23 7 1442 188 0 0 69 chr11 112405512 112405541 -9438315 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1442 494 280 315 14 chr11 112405586 112405875 -9437981 + MTEa LTR MaLR 1 374 -5 7 1442 252 189 48 119 chr11 112405898 112405982 -9437874 - ORR1E LTR MaLR -2 368 291 7 1442 207 146 0 0 chr11 112406005 112406046 -9437810 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1442 1298 212 160 14 chr11 112406064 112406427 -9437429 - MTD LTR MaLR -2 417 2 7 1442 712 290 14 37 chr11 112406486 112406701 -9437155 - ORR1E LTR MaLR -147 212 3 7 1442 393 75 0 0 chr11 112407017 112407070 -9436786 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1442 198 0 0 0 chr11 112408357 112408379 -9435477 + (TGG)n Simple_repeat Simple_repeat 1 22 0 7 1442 1161 233 36 7 chr11 112408429 112408710 -9435146 + MTD LTR MaLR 41 329 -90 7 1442 536 376 93 57 chr11 112408742 112409267 -9434589 - MLT-int LTR MaLR -537 1198 655 7 1442 585 64 0 0 chr11 112409460 112409538 -9434318 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 7 1442 405 0 0 0 chr11 112409642 112409687 -9434169 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1442 288 0 0 0 chr11 112409687 112409718 -9434138 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1442 636 362 36 24 chr11 112409718 112410216 -9433640 - MLT-int LTR MaLR -1231 504 1 7 1442 378 311 40 50 chr11 112410473 112410673 -9433183 + ORR1E LTR MaLR 8 205 -154 7 1442 1057 235 145 3 chr11 112410750 112411074 -9432782 - ORR1D2 LTR MaLR 0 370 1 7 1442 233 260 0 0 chr11 112411503 112411553 -9432303 + L1MEc LINE L1 48 97 -6303 7 1442 475 301 139 58 chr11 112412243 112412589 -9431267 - MLT1A LTR MaLR 0 374 1 7 1442 186 43 0 0 chr11 112413065 112413088 -9430768 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1442 284 0 28 0 chr11 112413754 112413790 -9430066 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 1442 194 365 31 71 chr11 112414256 112414480 -9429376 - L2 LINE L2 -519 2900 2686 7 1442 388 286 50 16 chr11 112414948 112415069 -9428787 + RSINE1 SINE B4 4 128 -37 7 1442 600 314 66 102 chr11 112415201 112415683 -9428173 + MLT2B3 LTR ERVL 15 479 -75 7 1442 537 16 0 0 chr11 112416139 112416201 -9427655 + (TTTTG)n Simple_repeat Simple_repeat 3 64 0 7 1442 813 183 15 0 chr11 112416201 112416332 -9427524 - B1_Mur2 SINE Alu -12 137 5 7 1442 236 356 31 75 chr11 112416638 112416799 -9427057 + MIR3 SINE MIR 39 192 -16 7 1442 28 29 0 0 chr11 112417215 112417250 -9426606 + AT_rich Low_complexity Low_complexity 1 35 0 7 1442 917 202 38 24 chr11 112418639 112418852 -9425004 - B3 SINE B2 0 216 1 7 1442 216 149 0 0 chr11 112419138 112419185 -9424671 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1442 701 296 4 43 chr11 112419230 112419456 -9424400 + B4 SINE B4 10 226 -66 7 1442 616 276 45 0 chr11 112419456 112419612 -9424244 + B3A SINE B2 2 164 -34 7 1442 459 0 0 0 chr11 112419615 112419666 -9424190 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1442 660 253 267 19 chr11 112420275 112420593 -9423263 + MTD LTR MaLR 23 419 0 7 1442 442 198 183 100 chr11 112421081 112421261 -9422595 + B3A SINE B2 1 195 -3 7 1442 203 0 0 36 chr11 112421367 112421395 -9422461 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 7 1442 783 153 15 0 chr11 112421396 112421533 -9422323 - B1_Mur4 SINE Alu -6 144 6 7 1442 451 253 0 0 chr11 112421721 112421808 -9422048 - RSINE1 SINE B4 -37 128 42 7 1442 346 277 20 18 chr11 112422348 112422522 -9421334 - HAL1-2a_MD LINE L1 -519 2505 2347 7 1442 1217 41 0 7 chr11 112422905 112423051 -9420805 + B1_Mm SINE Alu 3 147 0 7 1442 212 123 53 0 chr11 112423051 112423108 -9420748 + A-rich Low_complexity Low_complexity 1 60 0 7 1442 381 303 92 70 chr11 112423716 112424000 -9419856 + B4 SINE B4 3 292 0 7 1442 363 78 0 0 chr11 112424008 112424059 -9419797 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1442 5355 35 5 0 chr11 112424916 112425541 -9418315 + L1Md_F2 LINE L1 5954 6581 -1 7 1442 317 256 35 11 chr11 112426160 112426247 -9417609 + MER20 DNA MER1_type 15 103 -116 7 1442 277 241 169 48 chr11 112426728 112426811 -9417045 - PB1D10 SINE Alu 0 117 25 7 1442 243 0 0 0 chr11 112427163 112427190 -9416666 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1442 270 42 50 69 chr11 112427190 112427290 -9416566 + (TA)n Simple_repeat Simple_repeat 2 100 0 7 1442 394 243 21 29 chr11 112427409 112427549 -9416307 - ORR1E LTR MaLR -218 141 3 7 1442 328 208 25 38 chr11 112427628 112427708 -9416148 + ID4_ SINE ID 2 80 -3 7 1442 5047 195 36 25 chr11 112428210 112429251 -9414605 + RMER1A Other Other 1 1029 -1 7 1442 411 83 0 0 chr11 112430419 112430479 -9413377 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1442 206 128 26 0 chr11 112430479 112430518 -9413338 + GA-rich Low_complexity Low_complexity 2 41 0 8 1442 367 216 0 0 chr11 112430642 112430716 -9413140 - B4 SINE B4 -218 74 1 8 1442 302 300 9 9 chr11 112431245 112431356 -9412500 + MIRc SINE MIR 88 198 -70 8 1442 711 248 158 20 chr11 112432304 112432404 -9411452 - Lx9 LINE L1 -16 7628 7519 8 1442 495 0 0 0 chr11 112432404 112432459 -9411397 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1442 288 0 0 0 chr11 112432459 112432491 -9411365 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 1442 711 248 158 20 chr11 112432491 112432681 -9411175 - Lx9 LINE L1 -126 7518 7298 8 1442 307 235 106 0 chr11 112432715 112432800 -9411056 - MLT1B LTR MaLR -8 382 289 8 1442 687 283 32 35 chr11 112433515 112433859 -9409997 + RLTR15 LTR ERVK 1 343 -16 8 1442 1172 42 0 14 chr11 112434580 112434717 -9409139 + B1_Mus1 SINE Alu 2 138 -10 8 1442 182 37 0 36 chr11 112434717 112434745 -9409111 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1442 489 292 61 38 chr11 112435099 112435362 -9408494 - L1M5 LINE L1 -368 5811 5543 8 1442 435 38 0 0 chr11 112435362 112435415 -9408441 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1442 609 254 35 0 chr11 112435655 112435797 -9408059 + RSINE1 SINE B4 9 155 -10 8 1442 646 251 36 25 chr11 112435948 112436144 -9407712 - B3A SINE B2 0 198 1 8 1442 221 100 0 48 chr11 112436363 112436405 -9407451 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 8 1442 184 131 21 21 chr11 112437636 112437683 -9406173 + (CATA)n Simple_repeat Simple_repeat 2 48 0 8 1442 719 197 0 8 chr11 112438047 112438180 -9405676 + ID_B1 SINE B4 91 222 -2 8 1442 286 107 0 35 chr11 112438881 112438939 -9404917 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 8 1442 1108 263 64 17 chr11 112439569 112439914 -9403942 - MTE2b LTR MaLR -18 361 1 8 1442 351 89 0 0 chr11 112440330 112440386 -9403470 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1442 373 306 40 86 chr11 112440499 112440674 -9403182 - B4 SINE B4 -122 170 4 8 1442 201 39 0 0 chr11 112441284 112441310 -9402546 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1442 294 290 0 0 chr11 112441872 112441934 -9401922 - ID_B1 SINE B4 -70 154 93 8 1442 537 58 0 0 chr11 112443639 112443708 -9400148 + (GA)n Simple_repeat Simple_repeat 1 69 0 8 1442 348 24 0 0 chr11 112443708 112443749 -9400107 + (GGA)n Simple_repeat Simple_repeat 2 42 0 8 1442 365 262 138 28 chr11 112445655 112445800 -9398056 + B3A SINE B2 3 163 -35 8 1442 4579 135 69 12 chr11 112446085 112446927 -9396929 - RMER19B LTR ERVK -12 890 1 8 1442 21 0 0 0 chr11 112448571 112448592 -9395264 + AT_rich Low_complexity Low_complexity 1 21 0 8 1442 793 138 14 0 chr11 112448995 112449140 -9394716 + CT-rich Low_complexity Low_complexity 1 147 0 8 1442 549 135 0 0 chr11 112449157 112449246 -9394610 + (CACCAT)n Simple_repeat Simple_repeat 3 91 0 8 1442 189 48 70 23 chr11 112449273 112449316 -9394540 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 8 1442 261 0 0 0 chr11 112451093 112451122 -9392734 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1442 261 0 0 0 chr11 112451182 112451211 -9392645 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 1442 396 167 0 0 chr11 112451211 112451283 -9392573 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1442 288 242 116 39 chr11 112452091 112452220 -9391636 - MIR SINE MIR -38 224 86 8 1442 1543 211 55 33 chr11 112452247 112452609 -9391247 + ORR1D2 LTR MaLR 1 370 0 8 1442 219 296 0 0 chr11 112453401 112453455 -9390401 + GA-rich Low_complexity Low_complexity 4 57 0 8 1442 1206 100 0 0 chr11 112453456 112453636 -9390220 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 1442 646 186 7 7 chr11 112453637 112453783 -9390073 + GA-rich Low_complexity Low_complexity 2 147 0 8 1442 284 143 20 0 chr11 112454524 112454573 -9389283 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1442 560 199 6 33 chr11 112454580 112454762 -9389094 + (CATA)n Simple_repeat Simple_repeat 2 178 0 8 1442 280 282 13 0 chr11 112454730 112454886 -9388970 + (CA)n Simple_repeat Simple_repeat 2 159 0 8 1442 1308 274 83 73 chr11 112455648 112455966 -9387890 - Lx8 LINE L1 -4 7469 7131 8 1442 246 302 187 53 chr11 112455966 112456137 -9387719 - B3A SINE B2 -4 194 1 8 1442 1308 274 83 73 chr11 112456137 112456381 -9387475 - Lx8 LINE L1 -343 7130 6901 8 1442 432 0 0 0 chr11 112457430 112457478 -9386378 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1442 198 0 0 0 chr11 112457596 112457618 -9386238 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 8 1442 515 279 130 18 chr11 112457936 112458159 -9385697 + MER2 DNA MER2_type 27 274 -71 8 1442 230 243 14 54 chr11 112458306 112458380 -9385476 + B4A SINE B4 1 71 -221 8 1442 22 35 0 0 chr11 112458845 112458874 -9384982 + AT_rich Low_complexity Low_complexity 1 29 0 8 1442 547 126 31 25 chr11 112459082 112459245 -9384611 + (TCTCTG)n Simple_repeat Simple_repeat 2 165 0 8 1442 303 28 0 0 chr11 112459247 112459283 -9384573 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1442 441 0 0 0 chr11 112459388 112459437 -9384419 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 180 1462 204 51 83 chr11 112459565 112460035 -9383821 - Lx7 LINE L1 0 7696 7242 8 1443 401 362 117 32 chr11 112460799 112461210 -9382646 + LTR16A LTR ERVL 6 451 0 8 1443 304 125 0 0 chr11 112461265 112461305 -9382551 - Lx2 LINE L1 -743 6254 6215 8 1443 5409 95 4 21 chr11 112461310 112462085 -9381771 + Lx2 LINE L1 6236 6997 0 8 1443 920 289 8 8 chr11 112462480 112462721 -9381135 + B4A SINE B4 5 245 -47 8 1443 598 107 40 13 chr11 112462774 112462926 -9380930 + (CA)n Simple_repeat Simple_repeat 1 156 0 8 1443 396 297 25 0 chr11 112463050 112463168 -9380688 + B4A SINE B4 10 130 -162 8 1443 267 282 28 0 chr11 112463324 112463395 -9380461 + ID4 SINE ID 10 82 -1 8 1443 365 352 56 6 chr11 112463494 112463654 -9380202 + HERV16-int LTR ERVL 476 643 -4353 8 1443 239 315 23 61 chr11 112464118 112464250 -9379606 - MER58D DNA MER1_type 0 386 260 8 1443 257 167 0 18 chr11 112464430 112464485 -9379371 + CT-rich Low_complexity Low_complexity 2 55 0 8 1443 479 347 62 34 chr11 112464485 112464843 -9379013 - Lx8 LINE L1 -55 7418 7051 8 1443 180 252 37 83 chr11 112465030 112465138 -9378718 - L3b LINE CR1 -168 314 212 8 1443 692 292 5 15 chr11 112465491 112465696 -9378160 + L1M4 LINE L1 4832 5034 -1112 8 1443 217 299 123 23 chr11 112466386 112466516 -9377340 + MIRb SINE MIR 78 220 -42 8 1443 768 322 50 0 chr11 112466566 112466824 -9377032 + B4 SINE B4 2 272 -20 8 1443 425 345 53 29 chr11 112468498 112468743 -9375113 - MER20B DNA MER1_type -310 473 223 8 1443 697 306 49 11 chr11 112471068 112471332 -9372524 + B4 SINE B4 1 274 -18 8 1443 315 0 0 0 chr11 112471364 112471399 -9372457 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1443 255 274 0 0 chr11 112471418 112471480 -9372376 + GA-rich Low_complexity Low_complexity 1 62 0 8 1443 285 295 53 18 chr11 112471794 112471908 -9371948 - MIR SINE MIR -80 182 65 8 1443 486 322 0 63 chr11 112473067 112473256 -9370600 + MER97c DNA MER1_type? 15 191 -899 8 1443 684 303 77 57 chr11 112473525 112473773 -9370083 + B4 SINE B4 40 292 0 8 1443 378 0 0 0 chr11 112473779 112473821 -9370035 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1443 436 279 0 7 chr11 112473821 112474107 -9369749 + (CA)n Simple_repeat Simple_repeat 1 283 0 8 1443 326 62 0 20 chr11 112474107 112474156 -9369700 + HAL1-3A_ME LINE L1 1976 2023 -835 8 1443 256 353 43 0 chr11 112474401 112474517 -9369339 + MER58B DNA MER1_type 213 333 -8 8 1443 343 354 77 62 chr11 112474784 112474897 -9368959 + MLT1B LTR MaLR 29 152 -238 8 1443 3050 44 0 0 chr11 112474897 112475263 -9368593 - L1Md_F3 LINE L1 0 6584 6219 8 1443 343 329 84 46 chr11 112475263 112475501 -9368355 + MLT1B LTR MaLR 153 460 -7 8 1443 1070 244 87 42 chr11 112475664 112475997 -9367859 + MTEb LTR MaLR 24 371 -8 8 1443 504 330 78 26 chr11 112476278 112476626 -9367230 - L2 LINE L2 -904 2515 2150 8 1443 471 279 127 9 chr11 112477106 112477327 -9366529 - L2 LINE L2 -1891 1528 1282 8 1443 521 179 8 57 chr11 112478409 112478533 -9365323 - MLT1B LTR MaLR -170 220 103 8 1443 685 327 63 16 chr11 112478552 112478807 -9365049 - MLT1A0 LTR MaLR -13 352 86 8 1443 227 250 112 11 chr11 112478944 112479033 -9364823 - MLT1A0 LTR MaLR -366 101 4 8 1443 361 303 0 9 chr11 112479828 112479938 -9363918 + ID_B1 SINE B4 84 192 -32 8 1443 283 190 152 0 chr11 112480299 112480378 -9363478 + B3A SINE B2 1 91 -107 8 1443 1450 210 88 44 chr11 112480384 112480772 -9363084 - MTD LTR MaLR -14 405 1 8 1443 269 302 23 0 chr11 112480791 112480877 -9362979 + B3A SINE B2 95 182 -16 8 1443 450 0 0 0 chr11 112480884 112480934 -9362922 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1443 306 294 33 132 chr11 112481482 112481560 -9362296 - B4A SINE B4 0 292 231 8 1443 717 202 112 6 chr11 112481560 112481739 -9362117 - B3 SINE B2 -17 199 2 8 1443 306 294 33 132 chr11 112481739 112481872 -9361984 - B4A SINE B4 -62 230 102 8 1443 218 250 0 0 chr11 112482770 112482818 -9361038 + CT-rich Low_complexity Low_complexity 1 48 0 8 1443 671 35 12 0 chr11 112482983 112483069 -9360787 + (GA)n Simple_repeat Simple_repeat 2 88 0 8 1443 711 65 0 0 chr11 112483677 112483770 -9360086 + (TC)n Simple_repeat Simple_repeat 1 93 0 8 1443 246 297 16 71 chr11 112483808 112483935 -9359921 + PB1D7 SINE Alu 1 120 0 8 1443 441 213 16 16 chr11 112483978 112484107 -9359749 + GA-rich Low_complexity Low_complexity 2 130 0 8 1443 528 240 111 35 chr11 112484481 112484680 -9359176 - B3 SINE B2 0 216 3 8 1443 605 322 97 15 chr11 112485469 112485728 -9358128 + B4A SINE B4 1 280 -12 8 1443 447 314 53 74 chr11 112485909 112486194 -9357662 + MLT1D LTR MaLR 225 503 -2 8 1443 192 179 0 0 chr11 112486348 112486387 -9357469 + CT-rich Low_complexity Low_complexity 4 42 0 8 1443 183 168 84 0 chr11 112487756 112487899 -9355957 + (TA)n Simple_repeat Simple_repeat 2 156 0 9 1443 485 318 58 7 chr11 112487906 112488061 -9355795 - RSINE1 SINE B4 0 165 3 9 1443 1989 69 84 39 chr11 112489732 112490065 -9353791 + RLTR10B2 LTR ERVK 18 365 0 9 1443 876 279 141 14 chr11 112491126 112491489 -9352367 - Lx8 LINE L1 -2 7471 7063 9 1443 378 0 0 0 chr11 112491698 112491740 -9352116 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1443 537 293 70 62 chr11 112491811 112492069 -9351787 - B4 SINE B4 0 292 33 9 1443 255 114 0 0 chr11 112492343 112492387 -9351469 + (T)n Simple_repeat Simple_repeat 1 44 0 9 1443 206 51 75 25 chr11 112492449 112492489 -9351367 + CT-rich Low_complexity Low_complexity 4 45 0 9 1443 390 248 0 4 chr11 112493488 112493732 -9350124 + (TG)n Simple_repeat Simple_repeat 1 242 0 9 1443 183 250 0 0 chr11 112493750 112493834 -9350022 + (TG)n Simple_repeat Simple_repeat 2 85 0 9 1443 601 262 89 21 chr11 112493840 112494031 -9349825 - B3 SINE B2 -12 204 1 9 1443 190 318 79 35 chr11 112494079 112494193 -9349663 + MIRb SINE MIR 118 236 -32 9 1443 224 249 0 8 chr11 112494288 112494406 -9349450 + GA-rich Low_complexity Low_complexity 1 116 0 9 1443 357 109 0 0 chr11 112494410 112494465 -9349391 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1443 1814 137 22 0 chr11 112495379 112495693 -9348163 - ORR1A4 LTR MaLR -8 321 1 9 1443 605 151 31 27 chr11 112495740 112495967 -9347889 + (TAGA)n Simple_repeat Simple_repeat 1 227 0 9 1443 372 94 0 0 chr11 112495971 112496024 -9347832 + (CATA)n Simple_repeat Simple_repeat 2 54 0 9 1443 752 246 40 84 chr11 112496697 112496994 -9346862 + B4 SINE B4 1 284 -8 9 1443 315 0 0 0 chr11 112497040 112497075 -9346781 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1443 898 238 148 29 chr11 112497629 112497940 -9345916 + Lx8 LINE L1 7124 7471 -2 9 1443 360 0 0 0 chr11 112498166 112498206 -9345650 + (CCA)n Simple_repeat Simple_repeat 3 42 0 9 1443 483 18 0 0 chr11 112498706 112498762 -9345094 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 9 1443 300 242 0 0 chr11 112498840 112498902 -9344954 + B1_Mur3 SINE Alu 37 98 -51 9 1443 642 132 39 20 chr11 112498912 112499222 -9344634 + GA-rich Low_complexity Low_complexity 1 315 0 9 1443 588 245 82 3 chr11 112499237 112499415 -9344441 + B3A SINE B2 21 211 -5 9 1443 1263 94 0 0 chr11 112500035 112500215 -9343641 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1443 528 121 0 0 chr11 112500522 112500613 -9343243 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1443 740 231 20 0 chr11 112500614 112500761 -9343095 - B3A SINE B2 -44 154 5 3 1443 211 289 114 30 chr11 112500767 112500899 -9342957 + L2b LINE L2 3004 3146 -229 4 1443 194 309 0 0 chr11 112501038 112501097 -9342759 + L2b LINE L2 3331 3426 0 5 1443 1311 228 100 23 chr11 112501739 112502089 -9341767 - MTE2b LTR MaLR 0 379 3 6 1443 184 337 21 43 chr11 112502178 112502271 -9341585 + L2b LINE L2 3284 3374 -1 4 1443 1661 238 34 87 chr11 112502320 112503078 -9340778 + Lx7 LINE L1 2945 3922 -1958 7 1443 2563 239 20 30 chr11 112503072 112504142 -9339714 + Lx7 LINE L1 5284 6343 -1353 7 1443 1354 246 115 21 chr11 112504129 112504548 -9339308 + Lx7 LINE L1 6922 7379 -317 7 1443 195 42 0 0 chr11 112504579 112504603 -9339253 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1443 594 324 5 46 chr11 112505142 112505339 -9338517 - B3A SINE B2 -5 193 5 9 1443 1364 253 80 5 chr11 112505506 112505896 -9337960 - MTD LTR MaLR 0 419 1 1 1443 424 299 58 13 chr11 112506275 112506431 -9337425 + MER58A DNA MER1_type 44 206 -18 1 1443 388 282 9 35 chr11 112506607 112506721 -9337135 + PB1D10 SINE Alu 6 116 -1 1 1443 2947 87 33 12 chr11 112507080 112507482 -9336374 + Lx LINE L1 5588 6001 -653 1 1443 619 109 8 25 chr11 112507482 112507604 -9336252 + Lx LINE L1 6534 6653 -1 1 1443 2947 87 33 12 chr11 112507604 112507620 -9336236 + Lx LINE L1 6002 6015 -639 1 1443 676 241 53 0 chr11 112507669 112507839 -9336017 + B3 SINE B2 38 216 0 1 1443 676 229 0 9 chr11 112507966 112508120 -9335736 + ID_B1 SINE B4 77 224 0 1 1443 207 0 0 0 chr11 112508727 112508750 -9335106 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1443 432 0 0 0 chr11 112508927 112508975 -9334881 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1443 249 100 0 0 chr11 112509131 112509171 -9334685 - Lx LINE L1 -12 6985 6946 1 1443 3757 93 28 9 chr11 112509172 112509703 -9334153 - Lx LINE L1 -112 6542 6002 1 1443 270 0 0 0 chr11 112509712 112509742 -9334114 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2 1443 468 0 0 0 chr11 112509746 112509798 -9334058 + (TGG)n Simple_repeat Simple_repeat 1 52 0 2 1443 1093 90 0 0 chr11 112509798 112509938 -9333918 - B1_Mus1 SINE Alu -2 146 7 2 1443 362 153 127 0 chr11 112509939 112510025 -9333831 - Lx LINE L1 -986 6011 5917 1 1443 209 250 0 35 chr11 112511344 112511402 -9332454 + (CATG)n Simple_repeat Simple_repeat 1 56 0 2 1443 218 136 23 0 chr11 112511403 112511447 -9332409 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1443 320 286 83 8 chr11 112511486 112511606 -9332250 - ID_B1 SINE B4 -84 140 12 2 1443 227 206 64 64 chr11 112511774 112511883 -9331973 - Lx8 LINE L1 -25 7448 7340 2 1443 1071 176 18 27 chr11 112511973 112512195 -9331661 - URR1B DNA MER1_type 0 225 6 2 1443 734 299 48 25 chr11 112512201 112512554 -9331302 - Lx8 LINE L1 -199 7274 6896 2 1443 285 260 72 63 chr11 112512942 112513053 -9330803 + PB1D10 SINE Alu 1 112 -5 2 1443 587 288 27 0 chr11 112513063 112513209 -9330647 + RSINE1 SINE B4 4 153 -12 2 1443 488 102 10 30 chr11 112513209 112513310 -9330546 + (CATA)n Simple_repeat Simple_repeat 2 100 0 3 1443 484 223 31 69 chr11 112514000 112514159 -9329697 + RMER15 LTR ERVL 6 158 -417 3 1443 809 244 37 14 chr11 112514189 112514405 -9329451 + RMER15 LTR ERVL 355 575 0 3 1443 450 0 0 0 chr11 112514893 112514943 -9328913 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1443 275 286 81 48 chr11 112515638 112515847 -9328009 + L1MB1 LINE L1 5846 6061 -107 3 1443 279 222 0 0 chr11 112515997 112516051 -9327805 - PB1D9 SINE Alu -49 71 18 3 1443 504 0 0 0 chr11 112516260 112516316 -9327540 + (TTTTG)n Simple_repeat Simple_repeat 3 58 0 3 1443 870 241 99 19 chr11 112516666 112516928 -9326928 - B4A SINE B4 -2 290 8 3 1443 727 249 113 10 chr11 112517334 112517537 -9326319 - ID_B1 SINE B4 0 224 1 3 1443 1109 169 33 0 chr11 112517785 112517969 -9325887 - Lx5 LINE L1 -551 6499 6310 3 1443 327 303 50 10 chr11 112518204 112518304 -9325552 + PB1D9 SINE Alu 10 113 -7 3 1443 393 164 0 0 chr11 112518668 112518741 -9325115 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1443 603 284 79 0 chr11 112519628 112519843 -9324013 + MER2 DNA MER2_type 86 317 -28 4 1443 537 16 0 0 chr11 112520079 112520141 -9323715 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1443 2143 197 11 14 chr11 112520144 112520586 -9323270 + BGLII_B LTR ERVK 1 441 0 4 1443 566 243 26 30 chr11 112520705 112520911 -9322945 - B3 SINE B2 0 198 1 4 1443 764 281 12 94 chr11 112521437 112521779 -9322077 + Lx8 LINE L1 7158 7471 -2 4 1443 21 0 0 0 chr11 112521817 112521838 -9322018 + AT_rich Low_complexity Low_complexity 1 21 0 4 1443 273 335 80 7 chr11 112521956 112522106 -9321750 + MLT1E2 LTR MaLR 340 500 -127 4 1443 378 0 0 0 chr11 112522203 112522245 -9321611 + (CAA)n Simple_repeat Simple_repeat 2 43 0 4 1443 830 221 57 57 chr11 112522397 112522627 -9321229 + B4A SINE B4 1 230 -62 4 1443 360 0 0 0 chr11 112522629 112522669 -9321187 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1443 762 116 0 0 chr11 112523153 112523282 -9320574 + (GA)n Simple_repeat Simple_repeat 2 130 0 5 1443 487 260 58 68 chr11 112523994 112524200 -9319656 + B3A SINE B2 13 216 0 5 1443 246 316 41 58 chr11 112524364 112524485 -9319371 - B1F2 SINE Alu 0 120 2 5 1443 27 29 0 0 chr11 112524587 112524621 -9319235 + AT_rich Low_complexity Low_complexity 1 34 0 5 1443 546 311 37 12 chr11 112524674 112524837 -9319019 - B3A SINE B2 -16 182 16 5 1443 1771 74 0 0 chr11 112525367 112525609 -9318247 + MTB LTR MaLR 159 400 0 5 1443 308 64 21 0 chr11 112526105 112526152 -9317704 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 5 1443 342 0 0 0 chr11 112526836 112526874 -9316982 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1443 629 86 0 11 chr11 112526874 112526968 -9316888 + (GGA)n Simple_repeat Simple_repeat 2 94 0 5 1443 304 176 18 53 chr11 112527016 112527130 -9316726 + GA-rich Low_complexity Low_complexity 3 112 0 6 1443 889 260 62 48 chr11 112527443 112527649 -9316207 + MTE2a LTR MaLR 75 286 -93 6 1443 1184 245 46 54 chr11 112527649 112528020 -9315836 + ORR1D2 LTR MaLR 3 370 0 6 1443 889 260 62 48 chr11 112528020 112528104 -9315752 + MTE2a LTR MaLR 287 369 -10 6 1443 438 20 0 0 chr11 112530327 112530378 -9313478 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1443 258 330 0 67 chr11 112530498 112530618 -9313238 - MER81 DNA AcHobo -1 113 2 6 1443 552 30 0 0 chr11 112532045 112532111 -9311745 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1443 414 0 0 0 chr11 112532547 112532593 -9311263 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1443 355 315 89 0 chr11 112532609 112532755 -9311101 - B3A SINE B2 -25 173 15 6 1443 270 56 0 0 chr11 112532873 112532909 -9310947 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 6 1443 663 13 0 0 chr11 112533047 112533123 -9310733 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1443 33 25 0 0 chr11 112533752 112533792 -9310064 + AT_rich Low_complexity Low_complexity 1 40 0 7 1443 763 266 86 19 chr11 112534390 112534647 -9309209 + B4A SINE B4 1 274 -18 7 1443 234 0 0 0 chr11 112534838 112534864 -9308992 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1443 1339 41 4 7 chr11 112535176 112535450 -9308406 + (CA)n Simple_repeat Simple_repeat 1 273 0 7 1443 930 24 24 0 chr11 112535849 112535974 -9307882 + (GA)n Simple_repeat Simple_repeat 2 129 0 7 1443 513 115 0 0 chr11 112536319 112536397 -9307459 + (CGTG)n Simple_repeat Simple_repeat 1 78 0 7 1443 410 236 0 0 chr11 112536405 112536511 -9307345 - MER121 Unknown Unknown -168 244 139 7 1443 3598 53 2 0 chr11 112537005 112537441 -9306415 - L1_Mus1 LINE L1 -2 6565 6129 7 1443 270 187 63 51 chr11 112537441 112537520 -9306336 + L1Md_F LINE L1 420 499 -6020 7 1443 344 59 0 19 chr11 112537761 112537813 -9306043 + (TGG)n Simple_repeat Simple_repeat 2 52 0 7 1443 329 324 29 0 chr11 112537813 112537918 -9305938 - PB1D10 SINE Alu -9 108 1 8 1443 359 289 22 0 chr11 112537829 112537919 -9305937 - ID_B1 SINE B4 -52 172 81 8 1443 229 220 17 0 chr11 112538400 112538456 -9305400 - MTE2b LTR MaLR -1 378 322 8 1443 1179 80 11 11 chr11 112538456 112538633 -9305223 - URR1B DNA MER1_type 0 225 49 8 1443 468 262 11 96 chr11 112539295 112539472 -9304384 + RSINE1 SINE B4 2 163 -2 8 1443 236 186 17 0 chr11 112539473 112539532 -9304324 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1443 378 0 0 0 chr11 112539800 112539842 -9304014 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1443 746 215 86 53 chr11 112540113 112540300 -9303556 - B3 SINE B2 -17 199 7 8 1443 1687 134 236 41 chr11 112541659 112541739 -9302117 - RMER4A LTR ERVK 0 466 385 8 1443 470 17 17 0 chr11 112541739 112541798 -9302058 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1443 1687 134 236 41 chr11 112541798 112542071 -9301785 - RMER4A LTR ERVK -82 384 35 8 1443 582 63 0 0 chr11 112542071 112542150 -9301706 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1443 441 0 0 0 chr11 112542150 112542198 -9301658 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1443 1687 134 236 41 chr11 112542198 112542232 -9301624 - RMER4A LTR ERVK -432 34 2 8 1443 360 0 0 0 chr11 112542268 112542308 -9301548 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 9 1443 379 169 0 0 chr11 112542310 112542381 -9301475 - B4 SINE B4 -221 71 1 9 1443 211 346 130 31 chr11 112542662 112542823 -9301033 + MamSINE1 SINE tRNA 77 253 -37 9 1443 587 341 19 5 chr11 112543268 112543474 -9300382 - B4 SINE B4 0 292 84 9 1443 2066 132 0 60 chr11 112543710 112544057 -9299799 + ORR1A3 LTR MaLR 1 326 0 9 1443 653 217 189 103 chr11 112544322 112544671 -9299185 + MTE2a LTR MaLR 1 379 0 9 1443 261 0 0 0 chr11 112545194 112545223 -9298633 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 9 1443 575 162 41 33 chr11 112545936 112546057 -9297799 - RSINE1 SINE B4 -36 129 8 9 1443 729 213 29 87 chr11 112546374 112546580 -9297276 + RMER30 DNA MER1_type 9 202 0 1 1443 1184 45 13 0 chr11 112546790 112546944 -9296912 + (GGAGAA)n Simple_repeat Simple_repeat 5 160 0 1 1443 234 0 0 0 chr11 112547639 112547665 -9296191 + (CCA)n Simple_repeat Simple_repeat 2 27 0 1 1443 767 272 97 0 chr11 112548061 112548278 -9295578 + B4 SINE B4 1 238 -54 1 1443 216 0 0 0 chr11 112548318 112548342 -9295514 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1443 682 315 44 31 chr11 112548551 112548872 -9294984 - MLT1A0 LTR MaLR 0 365 41 1 1443 290 245 51 0 chr11 112548912 112549010 -9294846 - MER58B DNA MER1_type -128 213 111 1 1443 224 316 13 13 chr11 112549404 112549481 -9294375 - ID4_ SINE ID 0 83 7 1 1443 392 198 129 0 chr11 112549505 112549606 -9294250 - PB1 SINE Alu -8 119 6 1 1443 651 221 30 0 chr11 112549954 112550085 -9293771 - RSINE1 SINE B4 -24 141 7 1 1443 342 309 36 109 chr11 112550235 112550482 -9293374 + MLT1F2 LTR MaLR 309 537 -23 1 1443 24 0 0 0 chr11 112550626 112550650 -9293206 + AT_rich Low_complexity Low_complexity 1 24 0 1 1443 517 27 40 0 chr11 112550691 112550765 -9293091 + (TTTTG)n Simple_repeat Simple_repeat 4 80 0 1 1443 468 212 32 63 chr11 112550876 112551002 -9292854 + RSINE1 SINE B4 14 135 -30 1 1443 465 19 0 0 chr11 112551014 112551068 -9292788 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1443 243 0 0 0 chr11 112551137 112551164 -9292692 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1443 774 213 19 0 chr11 112552300 112552455 -9291401 - B3 SINE B2 -42 174 17 1 1443 432 0 0 0 chr11 112553527 112553575 -9290281 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1443 790 292 58 4 chr11 112553578 112553836 -9290020 - B4A SINE B4 -20 272 1 1 1443 590 291 0 7 chr11 112554894 112555036 -9288820 + RSINE1 SINE B4 1 141 -24 1 1443 407 327 13 13 chr11 112555175 112555327 -9288529 + B4A SINE B4 2 153 -139 1 1443 780 176 12 6 chr11 112555401 112555572 -9288284 + GA-rich Low_complexity Low_complexity 4 175 0 1 1443 1427 23 0 11 chr11 112555572 112555748 -9288108 + (GGGGA)n Simple_repeat Simple_repeat 4 177 0 1 1443 249 33 0 0 chr11 112555901 112555931 -9287925 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1443 2707 49 3 0 chr11 112557040 112557366 -9286490 - ORR1A2 LTR MaLR 0 327 1 1 1443 1407 228 97 23 chr11 112557596 112557986 -9285870 - MTD LTR MaLR 0 419 1 1 1443 608 254 7 40 chr11 112558267 112558415 -9285441 + B4 SINE B4 3 145 -147 1 1443 191 179 0 15 chr11 112558417 112558485 -9285371 + GA-rich Low_complexity Low_complexity 2 68 0 1 1443 767 251 98 116 chr11 112560128 112560507 -9283349 + MTE2a LTR MaLR 3 374 -5 1 1443 290 284 76 29 chr11 112560604 112560709 -9283147 + MER53 DNA hAT 5 114 -79 1 1443 21 0 0 0 chr11 112560909 112560930 -9282926 + AT_rich Low_complexity Low_complexity 1 21 0 1 1443 341 306 49 12 chr11 112561229 112561391 -9282465 + MIR SINE MIR 74 241 -21 1 1443 500 309 96 80 chr11 112561640 112561677 -9282179 + Lx8 LINE L1 7062 7092 -381 1 1443 369 0 0 0 chr11 112561677 112561718 -9282138 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1443 500 309 96 80 chr11 112561718 112561905 -9281951 + Lx8 LINE L1 7093 7298 -175 1 1443 468 0 0 0 chr11 112561905 112561957 -9281899 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1443 500 309 96 80 chr11 112561957 112562129 -9281727 + Lx8 LINE L1 7299 7463 -10 1 1443 252 0 0 0 chr11 112562213 112562241 -9281615 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1443 882 329 60 3 chr11 112562407 112562527 -9281329 + MLT1A0 LTR MaLR 48 178 -187 1 1443 480 77 0 0 chr11 112562527 112562592 -9281264 + (CCA)n Simple_repeat Simple_repeat 3 67 0 1 1443 882 329 60 3 chr11 112562592 112562770 -9281086 + MLT1A0 LTR MaLR 179 362 -3 1 1443 910 294 116 14 chr11 112563267 112563717 -9280139 + RMER15 LTR ERVL 1 575 0 1 1443 569 317 103 17 chr11 112563973 112564207 -9279649 - MLT1A0 LTR MaLR -72 293 40 1 1443 1076 31 0 0 chr11 112564521 112564648 -9279208 + B1_Mus1 SINE Alu 16 142 -6 1 1443 306 0 0 0 chr11 112564650 112564684 -9279172 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 1443 207 0 0 0 chr11 112564703 112564726 -9279130 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1443 359 324 79 129 chr11 112564823 112565163 -9278693 + L1MC3 LINE L1 5566 5888 -1994 1 1443 652 288 84 72 chr11 112565188 112565689 -9278167 + L1MC3 LINE L1 7108 7614 -171 1 1443 845 262 72 22 chr11 112566363 112566640 -9277216 + B4A SINE B4 2 292 0 1 1443 326 200 8 42 chr11 112566650 112567044 -9276812 + (CA)n Simple_repeat Simple_repeat 1 380 0 1 1443 717 129 0 43 chr11 112567063 112567249 -9276607 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1443 641 216 109 82 chr11 112568292 112568559 -9275297 + B4 SINE B4 2 275 -17 1 1443 333 288 0 0 chr11 112568599 112568752 -9275104 + (CA)n Simple_repeat Simple_repeat 1 153 0 1 1443 351 0 0 0 chr11 112568752 112568791 -9275065 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1443 342 365 8 16 chr11 112568979 112569107 -9274749 - MER2B DNA MER2_type 0 336 210 1 1443 432 0 0 0 chr11 112569222 112569270 -9274586 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 1443 225 0 0 0 chr11 112571236 112571261 -9272595 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1443 225 0 0 0 chr11 112573707 112573732 -9270124 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1 1443 379 273 189 20 chr11 112573870 112574023 -9269833 + B4A SINE B4 91 269 -23 1 1443 429 66 0 0 chr11 112574027 112574088 -9269768 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1443 1310 247 16 10 chr11 112574677 112574975 -9268881 + B4A SINE B4 6 292 0 1 1443 492 273 136 21 chr11 112575435 112575626 -9268230 + MER63D DNA AcHobo 849 1061 0 1 1443 262 326 62 31 chr11 112575960 112576152 -9267704 + B4A SINE B4 3 196 -96 1 1443 290 211 9 0 chr11 112576245 112576359 -9267497 + GA-rich Low_complexity Low_complexity 1 115 0 1 1443 597 14 0 0 chr11 112576975 112577045 -9266811 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1443 266 281 0 0 chr11 112578373 112578437 -9265419 + B3A SINE B2 2 65 -133 1 1443 333 247 21 31 chr11 112579522 112579618 -9264238 + MTEb LTR MaLR 97 191 -168 1 1443 430 289 32 48 chr11 112579659 112579831 -9264025 + MTEb LTR MaLR 204 378 -1 1 1443 320 322 121 9 chr11 112580049 112580165 -9263691 + MLT1I LTR MaLR 41 169 -242 1 1443 234 0 0 0 chr11 112580282 112580308 -9263548 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1443 879 81 0 0 chr11 112580333 112580444 -9263412 - B2_Mm2 SINE B2 -83 112 2 1 1443 225 65 0 0 chr11 112580507 112580538 -9263318 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1 1443 595 283 93 75 chr11 112580590 112580911 -9262945 - ORR1E LTR MaLR -25 334 8 1 1443 22 0 0 0 chr11 112581816 112581838 -9262018 + GC_rich Low_complexity Low_complexity 1 22 0 1 1443 274 319 76 11 chr11 112582725 112582817 -9261039 + MIRb SINE MIR 25 122 -146 1 1443 869 186 45 11 chr11 112582824 112583003 -9260853 + B3A SINE B2 13 197 -1 1 1443 306 125 0 0 chr11 112583122 112583170 -9260686 + (CAT)n Simple_repeat Simple_repeat 1 48 0 1 1443 187 208 36 143 chr11 112583262 112583346 -9260510 + L4 LINE RTE 1098 1172 -857 1 1443 583 246 119 51 chr11 112583538 112583791 -9260065 + B4 SINE B4 5 274 -18 1 1443 315 0 0 0 chr11 112583842 112583877 -9259979 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1443 365 203 25 22 chr11 112585018 112585108 -9258748 + BC1_Mm scRNA scRNA 3 92 -60 1 1443 528 16 0 0 chr11 112585362 112585423 -9258433 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1443 413 260 6 67 chr11 112585562 112585741 -9258115 + L1_Mur1 LINE L1 5480 5678 -619 1 1443 324 333 18 0 chr11 112586279 112586390 -9257466 + RSINE1 SINE B4 44 156 -9 1 1443 273 29 0 0 chr11 112586392 112586426 -9257430 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1443 351 0 0 0 chr11 112586843 112586882 -9256974 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1443 446 33 17 0 chr11 112587174 112587234 -9256622 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1443 210 91 0 0 chr11 112588012 112588045 -9255811 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1443 237 345 8 66 chr11 112588143 112588264 -9255592 - MER20 DNA MER1_type 0 219 106 1 1443 734 255 160 0 chr11 112588907 112589095 -9254761 - ID_B1 SINE B4 -4 220 3 1 1443 234 0 0 0 chr11 112589219 112589245 -9254611 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1443 387 0 0 0 chr11 112589245 112589287 -9254569 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1443 1005 258 43 11 chr11 112590472 112590750 -9253106 + B4 SINE B4 2 288 -4 1 180 603 214 17 3 chr11 112590777 112591131 -9252725 + (CA)n Simple_repeat Simple_repeat 1 359 0 1 1444 755 175 7 0 chr11 112591144 112591298 -9252558 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1444 539 222 24 0 chr11 112591338 112591682 -9252174 + (CA)n Simple_repeat Simple_repeat 1 352 0 1 1444 218 207 17 0 chr11 112591730 112591788 -9252068 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1444 285 314 58 7 chr11 112593192 112593330 -9250526 + LTR33A LTR ERVL 365 509 -11 1 1444 424 302 29 23 chr11 112594723 112594896 -9248960 - RLTR42-int LTR ERVK -4202 1320 1147 1 1444 297 0 0 0 chr11 112595084 112595117 -9248739 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1444 229 310 0 0 chr11 112595188 112595246 -9248610 - Charlie4a DNA MER1_type -1 507 450 1 1444 406 364 5 70 chr11 112595397 112595598 -9248258 + RMER30 DNA MER1_type 14 201 -1 1 1444 364 277 142 90 chr11 112595977 112596114 -9247742 + RSINE1 SINE B4 3 149 -16 1 1444 627 14 0 0 chr11 112596114 112596186 -9247670 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1444 364 277 142 90 chr11 112596186 112596203 -9247653 + RSINE1 SINE B4 150 165 0 1 1444 639 78 0 0 chr11 112596205 112596295 -9247561 + (TAGG)n Simple_repeat Simple_repeat 1 90 0 1 1444 1333 35 19 0 chr11 112596297 112596607 -9247249 + (TAGA)n Simple_repeat Simple_repeat 1 315 0 1 1444 877 259 72 32 chr11 112596650 112596997 -9246859 + L1MC1 LINE L1 5921 6281 -52 1 1444 300 268 0 12 chr11 112597608 112597691 -9246165 + CT-rich Low_complexity Low_complexity 2 83 0 1 1444 322 259 73 12 chr11 112597751 112597833 -9246023 - B4A SINE B4 -20 272 186 1 1444 277 242 20 13 chr11 112597852 112598003 -9245853 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 1444 414 39 0 0 chr11 112598802 112598854 -9245002 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1444 584 248 46 20 chr11 112598992 112599144 -9244712 - B4 SINE B4 -128 164 9 1 1444 228 301 13 27 chr11 112599313 112599388 -9244468 + RSINE1 SINE B4 3 76 -89 2 1444 318 291 122 81 chr11 112599406 112599618 -9244238 + B4 SINE B4 1 228 -64 2 1444 307 296 57 0 chr11 112599600 112599688 -9244168 + RSINE1 SINE B4 73 165 0 2 1444 226 216 0 0 chr11 112599745 112599782 -9244074 + MT2B LTR ERVL 256 292 -309 2 1444 536 245 94 63 chr11 112599866 112600157 -9243699 - ORR1E LTR MaLR -33 346 85 2 1444 757 205 7 20 chr11 112600166 112600315 -9243541 - ORR1E LTR MaLR -204 155 9 2 1444 225 0 0 0 chr11 112600624 112600649 -9243207 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 1444 388 302 6 65 chr11 112600649 112600810 -9243046 - ID_B1 SINE B4 -15 209 15 2 1444 486 0 0 0 chr11 112600810 112600864 -9242992 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1444 475 253 44 119 chr11 112600877 112601128 -9242728 - MER101B LTR ERV1 -6 564 333 2 1444 241 302 162 30 chr11 112601151 112601318 -9242538 - MER101B LTR ERV1 -353 217 29 2 1444 1477 93 97 0 chr11 112601687 112601903 -9241953 + Lx4A LINE L1 6612 6848 -210 2 1444 2421 82 13 0 chr11 112601907 112602222 -9241634 - ORR1A2 LTR MaLR -8 319 1 2 1444 1140 188 19 0 chr11 112602222 112602430 -9241426 + Lx4A LINE L1 6844 7055 -3 2 1444 573 15 0 0 chr11 112602433 112602499 -9241357 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2 1444 699 262 117 67 chr11 112603231 112603591 -9240265 - MTE2a LTR MaLR -1 378 1 2 1444 385 338 22 0 chr11 112605790 112605926 -9237930 - HAL1-2a_MD LINE L1 -534 2490 2352 2 1444 2047 116 24 0 chr11 112606040 112606332 -9237524 - ORR1A2 LTR MaLR 0 327 29 2 1444 329 195 13 244 chr11 112606329 112606423 -9237433 - RLTR15 LTR ERVK -238 121 48 2 1444 207 0 0 0 chr11 112606430 112606453 -9237403 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1444 1114 70 21 0 chr11 112606453 112606588 -9237268 - B1_Mus2 SINE Alu -7 140 3 2 1444 329 195 13 244 chr11 112606588 112606649 -9237207 - RLTR15 LTR ERVK -312 47 2 2 1444 275 0 0 28 chr11 112606649 112606685 -9237171 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1444 314 344 11 63 chr11 112606722 112606896 -9236960 - MER101B LTR ERV1 -50 520 356 2 1444 1504 52 5 10 chr11 112607168 112607361 -9236495 + B2_Mm2 SINE B2 2 193 -2 2 1444 390 302 124 12 chr11 112608169 112608330 -9235526 - MLT2C1 LTR ERVL -55 342 164 2 1444 594 294 86 35 chr11 112608505 112608762 -9235094 + B4A SINE B4 1 270 -22 2 1444 341 316 60 48 chr11 112608918 112609084 -9234772 + MTEa LTR MaLR 6 173 -206 2 1444 300 316 139 71 chr11 112609084 112609170 -9234686 + MT2A LTR ERVL 6 274 -259 2 1444 287 240 186 24 chr11 112609170 112609294 -9234562 + MT2A LTR ERVL 385 528 -5 2 1444 217 94 0 0 chr11 112609461 112609493 -9234363 - B3 SINE B2 -183 33 2 2 1444 197 355 13 26 chr11 112609500 112609578 -9234278 - MIRm SINE MIR -95 181 105 2 1444 460 332 107 36 chr11 112610721 112611030 -9232826 + L2a LINE L2 3096 3426 0 2 1444 360 0 0 0 chr11 112611125 112611165 -9232691 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1444 813 236 6 39 chr11 112611167 112611348 -9232508 - B3A SINE B2 -23 175 1 2 1444 385 369 21 45 chr11 112611463 112611674 -9232182 + MIR SINE MIR 9 205 -57 2 1444 665 235 58 27 chr11 112611731 112611771 -9232085 - B3A SINE B2 -4 194 156 2 1444 441 0 0 0 chr11 112611771 112611820 -9232036 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1444 665 235 58 27 chr11 112611820 112611967 -9231889 - B3A SINE B2 -43 155 1 2 1444 2123 215 122 30 chr11 112612202 112612723 -9231133 + Lx9 LINE L1 6974 7489 -155 2 1444 252 0 0 0 chr11 112612723 112612751 -9231105 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1444 2123 215 122 30 chr11 112612751 112612838 -9231018 + Lx9 LINE L1 7490 7637 -7 2 1444 310 309 12 0 chr11 112612955 112613036 -9230820 + B4 SINE B4 3 84 -208 2 1444 450 0 0 0 chr11 112613172 112613222 -9230634 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1444 689 235 0 0 chr11 112613375 112613507 -9230349 + B1_Mur4 SINE Alu 7 138 -12 2 1444 364 145 24 12 chr11 112613508 112613592 -9230264 + GA-rich Low_complexity Low_complexity 1 85 0 2 1444 941 287 35 17 chr11 112614175 112614462 -9229394 + B4 SINE B4 1 292 0 2 1444 377 158 12 0 chr11 112614465 112614547 -9229309 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1444 1231 156 0 49 chr11 112614852 112615075 -9228781 - URR1A DNA MER1_type 0 226 15 2 1444 742 227 92 6 chr11 112615341 112615514 -9228342 - ID_B1 SINE B4 -8 216 29 2 1444 337 235 106 0 chr11 112615514 112615599 -9228257 - RMER13B LTR ERVK -4 904 811 2 1444 851 247 5 46 chr11 112615636 112615831 -9228025 - B3 SINE B2 -29 187 1 2 1444 523 269 9 16 chr11 112615864 112615992 -9227864 - PB1 SINE Alu -2 125 1 2 1444 555 43 0 0 chr11 112616033 112616103 -9227753 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1444 525 303 15 0 chr11 112616103 112616235 -9227621 - RSINE1 SINE B4 -24 141 8 2 1444 466 228 88 0 chr11 112616988 112617102 -9226754 + RSINE1 SINE B4 2 125 -40 2 1444 288 0 0 0 chr11 112617134 112617166 -9226690 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1444 214 82 61 0 chr11 112617265 112617314 -9226542 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2 1444 296 83 21 0 chr11 112617364 112617412 -9226444 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1444 208 407 26 0 chr11 112617445 112617558 -9226298 + L2a LINE L2 3102 3217 -209 2 1444 1051 228 100 44 chr11 112617634 112617816 -9226040 - B4A SINE B4 0 292 118 2 1444 369 0 0 0 chr11 112617816 112617857 -9225999 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1444 1051 228 100 44 chr11 112617857 112617945 -9225911 - B4A SINE B4 -175 117 9 2 1444 588 289 7 0 chr11 112618708 112618843 -9225013 + ID_B1 SINE B4 11 146 -78 2 1444 876 144 0 29 chr11 112618854 112618990 -9224866 + B1_Mur2 SINE Alu 3 134 -15 2 1444 333 0 0 0 chr11 112618996 112619033 -9224823 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2 1444 21 57 0 0 chr11 112619037 112619072 -9224784 + AT_rich Low_complexity Low_complexity 1 35 0 2 1444 420 224 0 0 chr11 112619072 112619148 -9224708 + ID_B1 SINE B4 134 209 -15 2 1444 986 281 17 48 chr11 112620178 112620469 -9223387 + B4 SINE B4 1 282 -10 2 1444 248 91 23 0 chr11 112620484 112620528 -9223328 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1444 711 213 7 0 chr11 112620613 112620749 -9223107 - B3 SINE B2 -6 210 74 2 1444 185 188 80 40 chr11 112620884 112620934 -9222922 - L4 LINE RTE -192 1837 1786 2 1444 481 263 101 45 chr11 112621633 112621812 -9222044 - MLT1C LTR MaLR -10 457 269 2 1444 495 271 45 83 chr11 112622207 112622323 -9221533 + B3A SINE B2 48 164 -34 2 1444 243 0 0 0 chr11 112622323 112622350 -9221506 + (TATG)n Simple_repeat Simple_repeat 1 27 0 2 1444 495 271 45 83 chr11 112622350 112622390 -9221466 + B3A SINE B2 165 198 0 2 1444 324 0 0 0 chr11 112622499 112622535 -9221321 + (CATA)n Simple_repeat Simple_repeat 4 39 0 2 1444 215 167 274 71 chr11 112622941 112623025 -9220831 + PB1D7 SINE Alu 20 120 0 2 1444 267 31 0 0 chr11 112623026 112623058 -9220798 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1444 889 179 0 0 chr11 112623058 112623198 -9220658 - B1_Mur4 SINE Alu -10 140 1 2 1444 416 264 28 28 chr11 112623352 112623461 -9220395 + PB1D7 SINE Alu 1 109 -11 2 1444 213 39 0 0 chr11 112624356 112624382 -9219474 + (CAT)n Simple_repeat Simple_repeat 1 26 0 2 1444 1080 84 12 6 chr11 112624431 112624598 -9219258 + (GGAGAA)n Simple_repeat Simple_repeat 2 169 0 2 1444 223 297 0 0 chr11 112625189 112625253 -9218603 + CT-rich Low_complexity Low_complexity 3 66 0 2 1444 279 0 0 0 chr11 112625259 112625290 -9218566 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1444 504 68 0 0 chr11 112625319 112625392 -9218464 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1444 654 243 35 7 chr11 112625394 112625535 -9218321 - RSINE1 SINE B4 -1 164 20 2 1444 816 163 174 26 chr11 112625537 112625732 -9218124 + URR1A DNA MER1_type 2 225 -1 2 1444 250 98 39 0 chr11 112625762 112625813 -9218043 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 2 1444 268 253 60 12 chr11 112625815 112625899 -9217957 - PB1D9 SINE Alu -30 90 3 2 1444 575 298 43 0 chr11 112626173 112626314 -9217542 - RSINE1 SINE B4 -17 148 2 2 1444 197 284 16 33 chr11 112626407 112626480 -9217376 + MIRm SINE MIR 38 108 -160 2 1444 315 0 0 0 chr11 112627207 112627242 -9216614 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1444 1184 257 28 14 chr11 112627245 112627529 -9216327 - B4A SINE B4 -4 288 1 2 1444 267 31 0 0 chr11 112627719 112627751 -9216105 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1444 297 0 0 0 chr11 112628267 112628300 -9215556 + (CAG)n Simple_repeat Simple_repeat 1 33 0 2 1444 645 239 0 7 chr11 112629906 112630045 -9213811 + B1F SINE Alu 6 143 -6 2 1444 897 163 76 40 chr11 112630052 112630250 -9213606 - ID_B1 SINE B4 -18 206 2 2 1444 573 15 0 0 chr11 112630475 112630541 -9213315 + (TCC)n Simple_repeat Simple_repeat 1 66 0 2 1444 820 141 7 7 chr11 112630737 112630887 -9212969 + GA-rich Low_complexity Low_complexity 1 150 0 2 1444 592 344 64 5 chr11 112632138 112632357 -9211499 - MER2 DNA MER2_type -26 319 88 2 1444 752 240 78 0 chr11 112632468 112632647 -9211209 - ID_B1 SINE B4 -27 197 5 2 1444 189 316 150 12 chr11 112633290 112633370 -9210486 + MIRm SINE MIR 63 153 -123 2 1444 24 0 0 0 chr11 112633809 112633833 -9210023 + AT_rich Low_complexity Low_complexity 1 24 0 2 1444 353 165 19 133 chr11 112633867 112633972 -9209884 + MT2B LTR ERVL 172 264 -337 2 1444 902 102 0 0 chr11 112633879 112634007 -9209849 + B1_Mur4 SINE Alu 23 150 0 2 1444 350 246 44 127 chr11 112633885 112634043 -9209813 + B4 SINE B4 113 257 -35 2 1444 190 219 0 47 chr11 112634403 112634446 -9209410 + MIRc SINE MIR 67 107 -161 2 1444 189 272 0 39 chr11 112635423 112635553 -9208303 + (CATA)n Simple_repeat Simple_repeat 4 128 0 3 1444 373 270 68 45 chr11 112638272 112638404 -9205452 + ID_B1 SINE B4 87 221 -3 3 1444 279 296 11 22 chr11 112638404 112638494 -9205362 + GA-rich Low_complexity Low_complexity 1 89 0 3 1444 23 0 0 0 chr11 112639325 112639348 -9204508 + AT_rich Low_complexity Low_complexity 1 23 0 3 1444 329 0 24 0 chr11 112640421 112640462 -9203394 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1444 549 44 0 0 chr11 112643139 112643207 -9200649 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1444 510 46 0 0 chr11 112645551 112645616 -9198240 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1444 21 0 0 0 chr11 112646855 112646876 -9196980 + AT_rich Low_complexity Low_complexity 1 21 0 3 1444 294 159 0 0 chr11 112647437 112647506 -9196350 + A-rich Low_complexity Low_complexity 1 69 0 3 1444 311 150 17 0 chr11 112647618 112647678 -9196178 + GA-rich Low_complexity Low_complexity 2 62 0 3 1444 26 0 0 0 chr11 112647740 112647766 -9196090 + AT_rich Low_complexity Low_complexity 1 26 0 3 1444 22 0 0 0 chr11 112648099 112648121 -9195735 + AT_rich Low_complexity Low_complexity 1 22 0 3 1444 287 164 0 16 chr11 112648121 112648183 -9195673 + CT-rich Low_complexity Low_complexity 2 62 0 3 1444 252 86 0 0 chr11 112648705 112648740 -9195116 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 3 1444 28 29 0 0 chr11 112648753 112648788 -9195068 + AT_rich Low_complexity Low_complexity 1 35 0 3 1444 189 0 0 0 chr11 112649332 112649353 -9194503 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1444 514 41 27 0 chr11 112650171 112650244 -9193612 + (TC)n Simple_repeat Simple_repeat 1 75 0 3 1444 342 0 0 0 chr11 112650514 112650552 -9193304 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1444 337 290 35 97 chr11 112651243 112651388 -9192468 - B1F2 SINE Alu -12 137 2 3 1444 796 264 5 56 chr11 112651388 112651482 -9192374 - B4 SINE B4 -209 83 1 3 1444 644 219 8 0 chr11 112651748 112651876 -9191980 + MTD LTR MaLR 35 163 -256 3 1444 1584 108 5 58 chr11 112651914 112652234 -9191622 + MTA_Mm LTR MaLR 1 233 -163 3 1444 1597 69 0 0 chr11 112652227 112652430 -9191426 + MTA_Mm LTR MaLR 194 396 0 3 1444 335 241 309 22 chr11 112652430 112652560 -9191296 + MTD LTR MaLR 205 373 -46 3 1444 869 269 19 0 chr11 112652643 112652851 -9191005 - B3 SINE B2 0 216 5 3 1444 1107 62 0 0 chr11 112652910 112653054 -9190802 + (TAGA)n Simple_repeat Simple_repeat 3 146 0 3 1444 227 198 59 10 chr11 112653054 112653149 -9190707 + (AGATG)n Simple_repeat Simple_repeat 3 102 0 3 1444 438 94 0 0 chr11 112653149 112653213 -9190643 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1444 227 198 59 10 chr11 112653213 112653219 -9190637 + (AGATG)n Simple_repeat Simple_repeat 2 7 0 3 1444 356 225 54 33 chr11 112653337 112653429 -9190427 - MTE2a LTR MaLR -77 302 209 3 1444 929 281 42 18 chr11 112653573 112653856 -9190000 - B4A SINE B4 -1 291 2 3 1444 375 356 28 11 chr11 112653918 112654094 -9189762 - MIRb SINE MIR -23 245 67 3 1444 1271 232 50 115 chr11 112654405 112654789 -9189067 - ORR1E LTR MaLR 0 359 1 3 1444 226 344 16 0 chr11 112654804 112654865 -9188991 + MER58C DNA MER1_type 153 214 -1 3 1444 346 266 70 0 chr11 112655592 112655702 -9188154 + B1_Mur1 SINE Alu 1 127 -22 3 1444 641 169 13 19 chr11 112655754 112655911 -9187945 + GA-rich Low_complexity Low_complexity 4 159 0 3 1444 297 240 128 60 chr11 112656166 112656299 -9187557 + RMER15 LTR ERVL 359 500 -75 3 1444 198 171 0 0 chr11 112656335 112656376 -9187480 + G-rich Low_complexity Low_complexity 1 41 0 3 1444 351 355 54 12 chr11 112656526 112656785 -9187071 - L1ME2 LINE L1 -18 6146 5877 3 1444 410 292 45 41 chr11 112656916 112657137 -9186719 - L1ME2 LINE L1 -503 5661 5440 3 1444 1034 248 178 51 chr11 112657145 112657265 -9186591 - MTEa LTR MaLR -4 375 260 3 1444 945 76 0 0 chr11 112657265 112657409 -9186447 + (GGTTG)n Simple_repeat Simple_repeat 5 148 0 3 1444 1034 248 178 51 chr11 112657409 112657620 -9186236 - MTEa LTR MaLR -120 259 2 3 1444 842 226 75 20 chr11 112659114 112659313 -9184543 + B3 SINE B2 1 210 -6 3 1444 561 223 27 54 chr11 112659384 112659531 -9184325 + RSINE1 SINE B4 3 145 -20 3 1444 885 65 0 51 chr11 112659531 112659708 -9184148 + (CA)n Simple_repeat Simple_repeat 1 168 0 3 1444 209 233 82 16 chr11 112659750 112659811 -9184045 + L4 LINE RTE 793 857 -1172 3 1444 231 36 0 0 chr11 112660671 112660699 -9183157 + (CCA)n Simple_repeat Simple_repeat 2 29 0 3 1444 856 233 9 60 chr11 112660899 112661114 -9182742 + ID_B1 SINE B4 4 207 -17 3 1444 1276 21 0 0 chr11 112661191 112661334 -9182522 + B1_Mm SINE Alu 5 147 0 3 1444 228 130 0 0 chr11 112661336 112661382 -9182474 + (A)n Simple_repeat Simple_repeat 1 46 0 3 1444 433 263 14 66 chr11 112661665 112661833 -9182023 - MTEb LTR MaLR -6 373 198 3 1444 603 40 0 0 chr11 112663104 112663178 -9180678 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1444 322 290 11 0 chr11 112663210 112663303 -9180553 + ORR1E LTR MaLR 9 102 -257 3 1444 576 240 24 18 chr11 112663313 112663495 -9180361 + B3 SINE B2 2 188 -7 3 1444 461 291 103 5 chr11 112663512 112663716 -9180140 + Lx7 LINE L1 7057 7280 -416 3 1444 448 212 59 0 chr11 112663794 112663879 -9179977 + B1F SINE Alu 25 114 -35 3 1444 378 0 0 0 chr11 112663879 112663921 -9179935 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1444 1170 190 47 0 chr11 112664324 112664535 -9179321 + ID_B1 SINE B4 2 222 -2 3 1444 386 228 20 185 chr11 112664755 112664906 -9178950 + ID_B1 SINE B4 88 213 -11 3 1444 429 141 0 0 chr11 112664952 112665023 -9178833 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1444 2587 60 31 0 chr11 112666987 112667304 -9176552 - ORR1A2 LTR MaLR 0 327 1 3 1444 450 0 0 0 chr11 112667396 112667446 -9176410 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1444 400 376 86 5 chr11 112667471 112667658 -9176198 + B4A SINE B4 91 292 0 3 1444 378 0 0 0 chr11 112668306 112668348 -9175508 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1444 315 0 0 0 chr11 112668348 112668382 -9175474 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1444 214 0 0 157 chr11 112668383 112668485 -9175371 + (AGTAG)n Simple_repeat Simple_repeat 3 88 0 3 1444 670 275 35 12 chr11 112668640 112668813 -9175043 - B3A SINE B2 -20 178 2 3 1444 274 295 13 0 chr11 112668918 112668996 -9174860 + CT-rich Low_complexity Low_complexity 1 79 0 3 1444 220 149 39 78 chr11 112668996 112669047 -9174809 - B1F SINE Alu -91 58 10 3 1444 550 311 205 17 chr11 112669958 112670197 -9173659 - B4A SINE B4 -4 288 5 3 1444 365 245 40 30 chr11 112670343 112670444 -9173412 + ID_B1 SINE B4 105 206 -18 3 1444 455 289 43 22 chr11 112670854 112670992 -9172864 - B1F SINE Alu -8 141 1 3 1444 1161 153 11 5 chr11 112671425 112671616 -9172240 - URR1A DNA MER1_type 0 226 35 3 1444 267 31 0 0 chr11 112671951 112671983 -9171873 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1444 241 234 0 0 chr11 112672439 112672486 -9171370 + G-rich Low_complexity Low_complexity 1 47 0 3 1444 195 42 0 0 chr11 112673304 112673328 -9170528 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 3 1444 620 223 30 23 chr11 112674429 112674562 -9169294 - B1F SINE Alu 0 149 16 3 1444 405 0 0 0 chr11 112675590 112675635 -9168221 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1444 865 245 19 28 chr11 112675765 112675979 -9167877 - B3 SINE B2 0 216 5 3 1444 651 268 28 51 chr11 112676322 112676538 -9167318 - B3 SINE B2 -4 212 2 3 1444 370 323 88 31 chr11 112676681 112676841 -9167015 + MER20 DNA MER1_type 5 173 -46 3 1444 465 230 128 61 chr11 112677186 112677334 -9166522 + MLT1B LTR MaLR 212 369 -21 3 1444 1117 80 0 0 chr11 112677573 112677711 -9166145 - B1_Mus1 SINE Alu -9 139 2 3 1444 920 149 29 15 chr11 112677711 112677878 -9165978 - B3 SINE B2 -15 178 2 3 1444 311 314 129 25 chr11 112678355 112678569 -9165287 + MLT2B3 LTR ERVL 117 347 -370 3 1444 289 341 52 116 chr11 112678411 112678756 -9165100 + MTEb LTR MaLR 50 372 -7 3 1444 797 225 13 0 chr11 112680545 112680696 -9163160 + B3A SINE B2 1 153 -45 3 1444 495 33 0 0 chr11 112680718 112680779 -9163077 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1444 813 77 31 0 chr11 112680794 112680924 -9162932 + (GGAA)n Simple_repeat Simple_repeat 4 137 0 3 1444 310 227 121 0 chr11 112681122 112681188 -9162668 + ID_B1 SINE B4 143 216 -8 3 1444 357 332 76 18 chr11 112681217 112681441 -9162415 + MIR SINE MIR 1 237 -25 3 1444 1083 92 7 0 chr11 112682520 112682662 -9161194 - B1_Mus2 SINE Alu 0 147 5 3 1444 465 19 0 0 chr11 112683493 112683547 -9160309 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1444 1118 66 0 7 chr11 112683547 112683685 -9160171 - B1_Mus1 SINE Alu -11 137 1 3 1444 3451 25 8 0 chr11 112684495 112684888 -9158968 + MTA_Mm LTR MaLR 1 396 0 3 1444 864 155 0 27 chr11 112684962 112684973 -9158883 - B1_Mus2 SINE Alu -5 142 132 3 1444 243 0 0 0 chr11 112684973 112685000 -9158856 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1444 864 155 0 27 chr11 112685000 112685134 -9158722 - B1_Mus2 SINE Alu -16 131 1 3 1444 500 241 52 118 chr11 112685161 112685373 -9158483 - B3A SINE B2 0 198 1 3 1444 221 174 14 0 chr11 112685475 112685544 -9158312 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1444 840 270 98 84 chr11 112686145 112686480 -9157376 - MTE2b LTR MaLR -12 367 28 3 1444 185 337 57 38 chr11 112686502 112686607 -9157249 - MIRb SINE MIR -85 183 77 3 1444 839 274 130 4 chr11 112689465 112689711 -9154145 + B4A SINE B4 2 278 -14 3 1444 334 299 197 12 chr11 112690678 112690856 -9153000 + ID_B1 SINE B4 6 216 -8 4 1444 735 12 0 0 chr11 112690857 112690941 -9152915 + (GGA)n Simple_repeat Simple_repeat 1 84 0 4 1444 647 217 0 6 chr11 112691459 112691617 -9152239 + CT-rich Low_complexity Low_complexity 1 157 0 4 1444 207 0 0 0 chr11 112692126 112692149 -9151707 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1444 714 289 43 5 chr11 112692315 112692524 -9151332 + ID_B1 SINE B4 1 217 -7 4 1444 695 275 22 38 chr11 112692536 112692721 -9151135 + B3A SINE B2 1 182 -16 4 1444 322 270 6 160 chr11 112693857 112694038 -9149818 + B4 SINE B4 1 153 -139 4 1444 314 186 204 23 chr11 112693981 112694069 -9149787 + PB1D10 SINE Alu 14 117 0 4 1444 331 283 179 89 chr11 112694065 112694255 -9149601 + B4 SINE B4 82 288 -4 4 1444 185 0 0 39 chr11 112695208 112695234 -9148622 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 4 1444 312 200 0 0 chr11 112695578 112695653 -9148203 + T-rich Low_complexity Low_complexity 1 75 0 4 1444 525 351 0 7 chr11 112696193 112696348 -9147508 + B4A SINE B4 139 292 0 4 1444 387 0 0 0 chr11 112696372 112696415 -9147441 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1444 384 22 0 0 chr11 112696415 112696459 -9147397 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1444 183 80 0 0 chr11 112697289 112697314 -9146542 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1444 22 0 0 0 chr11 112697441 112697463 -9146393 + AT_rich Low_complexity Low_complexity 1 22 0 4 1444 970 236 19 9 chr11 112697658 112697872 -9145984 + B3 SINE B2 1 216 0 4 1444 726 211 6 85 chr11 112697893 112698069 -9145787 + RSINE1 SINE B4 2 163 -2 4 1444 283 258 43 125 chr11 112698069 112698101 -9145755 + B2_Mm2 SINE B2 1 191 -4 4 1444 723 265 32 14 chr11 112698472 112698690 -9145166 + ID_B1 SINE B4 3 224 0 4 1444 374 235 70 111 chr11 112698711 112698947 -9144909 + RSINE1 SINE B4 68 292 0 4 1444 670 194 0 16 chr11 112698955 112699138 -9144718 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1444 618 309 56 46 chr11 112699659 112699826 -9144030 + B4A SINE B4 1 171 -121 4 1444 2012 173 185 8 chr11 112699826 112700205 -9143651 - RLTR41 LTR ERV1 0 446 1 4 1444 618 309 56 46 chr11 112700205 112700322 -9143534 + B4A SINE B4 172 288 -4 4 1444 283 269 62 71 chr11 112700428 112700540 -9143316 + B4 SINE B4 182 292 0 4 1444 302 333 111 24 chr11 112700833 112700959 -9142897 + L2a LINE L2 3288 3424 -2 4 1444 198 266 39 87 chr11 112701008 112701111 -9142745 + L2a LINE L2 3326 3423 -3 4 1444 249 57 0 0 chr11 112701711 112701746 -9142110 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1444 400 263 103 49 chr11 112702302 112702324 -9141532 + CYRA11_Mm Unknown Y-chromosome 170 384 -233 4 1444 967 155 137 6 chr11 112702324 112702506 -9141350 - URR1A DNA MER1_type -18 208 3 4 1444 519 17 0 0 chr11 112703650 112703710 -9140146 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1444 296 294 0 0 chr11 112703712 112703780 -9140076 - ID4_ SINE ID -8 75 8 4 1444 270 0 0 0 chr11 112704278 112704308 -9139548 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1444 1019 264 50 11 chr11 112704615 112704894 -9138962 + B4A SINE B4 1 290 -2 4 1444 570 259 211 0 chr11 112705199 112705384 -9138472 + ID_B1 SINE B4 1 224 0 4 1444 1634 193 14 121 chr11 112706352 112706649 -9137207 - RMER10B LTR ERVL -12 386 117 4 1444 441 0 0 0 chr11 112706649 112706698 -9137158 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1444 525 32 0 0 chr11 112706698 112706760 -9137096 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1444 1634 193 14 121 chr11 112706760 112706892 -9136964 - RMER10B LTR ERVL -282 116 3 4 1444 384 350 0 16 chr11 112707319 112707502 -9136354 + (TGG)n Simple_repeat Simple_repeat 1 180 0 4 1444 336 281 16 130 chr11 112707554 112707636 -9136220 - HAL1-2a_MD LINE L1 -517 2507 2428 4 1444 189 107 0 0 chr11 112707636 112707664 -9136192 + (ATG)n Simple_repeat Simple_repeat 2 29 0 4 1444 336 281 16 130 chr11 112707664 112707765 -9136091 - HAL1-2a_MD LINE L1 -597 2427 2345 4 1444 2010 311 43 10 chr11 112707916 112708608 -9135248 + Lx8 LINE L1 6262 6976 -497 4 1444 814 321 53 35 chr11 112708680 112709193 -9134663 + Lx8 LINE L1 6950 7471 -2 4 1444 435 52 0 0 chr11 112709494 112709552 -9134304 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 4 1444 283 304 7 101 chr11 112709977 112710044 -9133812 - B4 SINE B4 -151 141 16 4 1444 391 162 0 56 chr11 112710044 112710116 -9133740 - ID2 SINE ID 0 83 16 4 1444 539 226 58 14 chr11 112710123 112710262 -9133594 - B1F SINE Alu -3 146 2 4 1444 622 320 27 22 chr11 112710534 112710719 -9133137 - B3A SINE B2 -5 193 8 4 1444 481 299 153 11 chr11 112710728 112710917 -9132939 - ID_B1 SINE B4 -1 223 8 4 1444 282 350 0 0 chr11 112711897 112712000 -9131856 + L4 LINE RTE 842 944 -1085 4 1444 468 0 0 0 chr11 112712514 112712566 -9131290 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1444 25 0 0 0 chr11 112713262 112713287 -9130569 + AT_rich Low_complexity Low_complexity 1 25 0 4 1444 287 216 27 13 chr11 112713430 112713505 -9130351 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1444 500 220 15 23 chr11 112713507 112713774 -9130082 + (CATA)n Simple_repeat Simple_repeat 1 264 0 4 1444 1091 212 19 9 chr11 112713991 112714205 -9129651 - B3 SINE B2 0 216 1 4 1444 420 100 12 24 chr11 112714232 112714314 -9129542 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1444 435 260 0 39 chr11 112714314 112714418 -9129438 - RSINE1 SINE B4 -40 125 26 4 1444 556 182 11 0 chr11 112714457 112714633 -9129223 + CT-rich Low_complexity Low_complexity 2 179 0 4 1444 282 29 0 0 chr11 112714633 112714668 -9129188 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1444 247 322 8 47 chr11 112714676 112714803 -9129053 - Lx9 LINE L1 -238 7406 7285 4 1444 1180 296 69 35 chr11 112714806 112715258 -9128598 + Lx9 LINE L1 6798 7264 -380 4 1444 297 153 0 0 chr11 112715267 112715339 -9128517 + T-rich Low_complexity Low_complexity 1 72 0 4 1444 1063 273 17 42 chr11 112716154 112716441 -9127415 + B4 SINE B4 11 290 -2 4 1444 279 190 0 60 chr11 112716581 112716732 -9127124 + (TAA)n Simple_repeat Simple_repeat 3 144 0 4 1444 489 127 0 0 chr11 112716731 112716810 -9127046 + (GGA)n Simple_repeat Simple_repeat 3 81 0 4 1444 1122 224 5 14 chr11 112717754 112717971 -9125885 - B3 SINE B2 -1 215 1 4 1444 419 231 74 8 chr11 112719230 112719352 -9124504 - B1_Mur2 SINE Alu -11 138 9 4 1444 371 296 95 20 chr11 112719390 112719538 -9124318 - RSINE1 SINE B4 -4 161 3 4 1444 481 267 0 9 chr11 112719978 112720084 -9123772 + PB1D10 SINE Alu 5 109 -8 4 1444 263 191 0 0 chr11 112720105 112720152 -9123704 + ID4 SINE ID 5 51 -32 4 1444 252 178 0 0 chr11 112720148 112720193 -9123663 + tRNA-Ala-GCG tRNA tRNA 1 45 -30 4 1444 353 254 0 15 chr11 112720188 112720256 -9123600 + ID4_ SINE ID 6 72 -11 4 1444 734 164 6 114 chr11 112720272 112720410 -9123446 + B1_Mus2 SINE Alu 1 123 -24 4 1444 207 0 0 0 chr11 112720410 112720433 -9123423 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1444 734 164 6 114 chr11 112720433 112720452 -9123404 + B1_Mus2 SINE Alu 124 141 -6 4 1444 465 62 0 0 chr11 112720455 112720520 -9123336 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 4 1444 215 132 0 73 chr11 112721482 112721523 -9122333 + PB1D10 SINE Alu 44 81 -36 4 1445 289 275 98 15 chr11 112723040 112723173 -9120683 + B1F SINE Alu 1 144 -5 4 1445 412 186 10 19 chr11 112723180 112723284 -9120572 + GA-rich Low_complexity Low_complexity 3 105 0 4 1445 257 299 36 21 chr11 112723305 112723445 -9120411 + GA-rich Low_complexity Low_complexity 2 143 0 4 1445 608 211 22 0 chr11 112723805 112724126 -9119730 + C-rich Low_complexity Low_complexity 1 328 0 4 1445 552 224 136 77 chr11 112724154 112724323 -9119533 - B4 SINE B4 0 292 114 4 1445 199 342 68 0 chr11 112724389 112724462 -9119394 + MIRb SINE MIR 134 211 -57 4 1445 247 264 43 65 chr11 112725366 112725459 -9118397 + ORR1B1 LTR MaLR 151 241 -153 4 1445 1280 95 39 11 chr11 112725780 112725961 -9117895 + B2_Mm2 SINE B2 1 186 -9 4 1445 548 256 77 0 chr11 112725992 112726109 -9117747 + RSINE1 SINE B4 4 129 -36 4 1445 282 179 0 0 chr11 112726206 112726262 -9117594 + (ATGGTG)n Simple_repeat Simple_repeat 1 56 0 4 1445 461 252 0 85 chr11 112726568 112726698 -9117158 + B3A SINE B2 1 119 -79 4 1445 972 263 74 46 chr11 112726746 112727029 -9116827 - B4 SINE B4 0 292 2 4 1445 1215 222 86 11 chr11 112727501 112727563 -9116293 - B4A SINE B4 0 292 215 4 1445 441 0 0 0 chr11 112727563 112727612 -9116244 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1445 1215 222 86 11 chr11 112727612 112727818 -9116038 - B4A SINE B4 -78 214 4 4 1445 387 0 0 0 chr11 112727818 112727861 -9115995 + (CTTA)n Simple_repeat Simple_repeat 2 44 0 4 1445 204 40 0 0 chr11 112727987 112728012 -9115844 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1445 334 149 59 15 chr11 112728174 112728185 -9115671 + CYRA11_Mm Unknown Y-chromosome 161 174 -443 4 1445 528 179 0 10 chr11 112728185 112728281 -9115575 - URR1B DNA MER1_type 0 225 131 4 1445 690 211 7 13 chr11 112728617 112728766 -9115090 + B1_Mur2 SINE Alu 1 148 -1 4 1445 631 258 80 179 chr11 112728816 112729128 -9114728 + B4A SINE B4 8 288 -4 4 1445 311 328 64 50 chr11 112729144 112729193 -9114663 + B4A SINE B4 144 198 -94 4 1445 1208 128 0 16 chr11 112729193 112729376 -9114480 - B2_Mm2 SINE B2 -14 181 2 4 1445 311 328 64 50 chr11 112729376 112729467 -9114389 + B4A SINE B4 199 286 -6 4 1445 252 100 0 0 chr11 112729467 112729507 -9114349 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1445 444 214 79 96 chr11 112730056 112730247 -9113609 + B4A SINE B4 106 292 0 4 1445 218 258 82 114 chr11 112732555 112732739 -9111117 + MIRb SINE MIR 15 192 -76 4 1445 457 209 230 105 chr11 112733189 112733446 -9110410 + B4 SINE B4 4 292 0 4 1445 473 285 58 7 chr11 112733652 112733790 -9110066 - B4A SINE B4 -146 146 2 4 1445 658 273 91 43 chr11 112735066 112735342 -9108514 - B4 SINE B4 -2 290 2 4 1445 432 0 0 0 chr11 112736015 112736063 -9107793 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1445 463 289 53 86 chr11 112737111 112737414 -9106442 - L1MC3 LINE L1 -225 7560 7268 5 1445 486 226 28 28 chr11 112737414 112737555 -9106301 + B1F SINE Alu 1 141 -8 5 1445 603 158 117 0 chr11 112737581 112737701 -9106155 + B1_Mur4 SINE Alu 1 134 -16 5 1445 995 297 183 66 chr11 112737752 112738792 -9105064 - L1MC3 LINE L1 -505 7280 6120 5 1445 284 258 0 30 chr11 112738793 112738925 -9104931 + T-rich Low_complexity Low_complexity 3 130 0 5 1445 1161 252 39 18 chr11 112738946 112739229 -9104627 - B4 SINE B4 0 292 4 5 1445 629 304 68 123 chr11 112739299 112739639 -9104217 - L1MC3 LINE L1 -302 6031 5705 5 1445 627 121 0 0 chr11 112739639 112739738 -9104118 + (CGTG)n Simple_repeat Simple_repeat 1 99 0 5 1445 629 281 82 53 chr11 112739738 112740153 -9103703 - L1MC3 LINE L1 -629 5704 5315 5 1445 1141 269 76 46 chr11 112740158 112740551 -9103305 + MTD LTR MaLR 1 405 -14 5 1445 478 275 204 41 chr11 112740568 112740783 -9103073 - L1MC3 LINE L1 -839 5307 5043 5 1445 369 0 0 0 chr11 112740783 112740824 -9103032 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1445 478 286 256 99 chr11 112740824 112741343 -9102513 - L1MC3 LINE L1 -1104 5042 4456 5 1445 230 250 29 59 chr11 112741438 112741506 -9102350 + MER58C DNA MER1_type 150 215 0 5 1445 1028 182 123 0 chr11 112741665 112741852 -9102004 - B3 SINE B2 -6 210 1 5 1445 1385 296 24 35 chr11 112741910 112742284 -9101572 + MTE2b LTR MaLR 5 374 -5 5 1445 220 162 0 0 chr11 112743175 112743212 -9100644 + PB1 SINE Alu 74 110 -17 5 1445 217 198 25 0 chr11 112743242 112743323 -9100533 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 5 1445 237 311 23 8 chr11 112743530 112743663 -9100193 + L1M5 LINE L1 5297 5431 -742 5 1445 234 116 0 0 chr11 112743664 112743707 -9100149 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1445 333 318 70 32 chr11 112743848 112744033 -9099823 - MIRc SINE MIR -1 267 76 5 1445 450 0 0 0 chr11 112744363 112744413 -9099443 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 5 1445 1467 218 113 17 chr11 112745405 112745751 -9098105 + MTE2b LTR MaLR 1 379 0 5 1445 450 301 7 40 chr11 112746289 112746441 -9097415 + ID_B1 SINE B4 78 224 0 5 1445 188 111 28 0 chr11 112746441 112746477 -9097379 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 5 1445 287 301 0 27 chr11 112746482 112746557 -9097299 + ID4_ SINE ID 2 74 -9 5 1445 522 70 0 0 chr11 112747226 112747297 -9096559 + (GGA)n Simple_repeat Simple_repeat 1 71 0 5 1445 834 11 0 0 chr11 112747996 112748091 -9095765 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 5 1445 537 16 0 0 chr11 112748091 112748153 -9095703 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 5 1445 343 343 29 0 chr11 112748350 112748490 -9095366 - B1_Mur1 SINE Alu -5 144 1 5 1445 423 0 0 0 chr11 112748571 112748618 -9095238 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1445 303 284 164 0 chr11 112748641 112748757 -9095099 - MER20 DNA MER1_type -84 135 1 5 1445 216 0 0 0 chr11 112749021 112749045 -9094811 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1445 251 342 0 0 chr11 112749910 112749983 -9093873 - BC1_Mm scRNA scRNA -72 80 8 5 1445 260 371 57 0 chr11 112750357 112750427 -9093429 + ID4_ SINE ID 2 75 -8 5 1445 249 320 80 0 chr11 112750370 112750445 -9093411 + B4 SINE B4 20 100 -192 5 1445 385 252 58 0 chr11 112750460 112750563 -9093293 + PB1D10 SINE Alu 3 111 -6 5 1445 283 257 156 65 chr11 112751360 112751514 -9092342 - MLT1F2 LTR MaLR -152 408 241 5 1445 701 309 54 93 chr11 112751537 112751923 -9091933 + MLT2D LTR ERVL 9 379 -35 5 1445 698 195 0 8 chr11 112751971 112752209 -9091647 + (TG)n Simple_repeat Simple_repeat 1 235 0 5 1445 363 218 0 0 chr11 112752220 112752321 -9091535 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 1445 795 272 41 92 chr11 112752392 112752684 -9091172 - B4 SINE B4 -14 278 2 5 1445 309 346 52 22 chr11 112752791 112752927 -9090929 - MLT1F2 LTR MaLR -354 206 67 5 1445 251 254 0 0 chr11 112753160 112753231 -9090625 + (TGG)n Simple_repeat Simple_repeat 1 71 0 5 1445 691 282 88 101 chr11 112753239 112753535 -9090321 - B4A SINE B4 0 292 1 5 1445 225 154 0 0 chr11 112755560 112755599 -9088257 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 5 1445 912 247 76 60 chr11 112755762 112756063 -9087793 + RMER15 LTR ERVL 257 562 -13 5 1445 481 106 0 0 chr11 112756607 112756673 -9087183 - tRNA-Lys-AAG tRNA tRNA 0 76 11 5 1445 511 304 76 0 chr11 112757271 112757442 -9086414 - B3A SINE B2 -14 184 1 5 1445 180 77 0 0 chr11 112757703 112757729 -9086127 + (TTTTTA)n Simple_repeat Simple_repeat 1 26 0 5 1445 1396 269 50 25 chr11 112757899 112758306 -9085550 - MTD LTR MaLR -15 404 1 5 1445 808 288 190 11 chr11 112758479 112758837 -9085019 + MLT1G1 LTR MaLR 113 534 -45 5 1445 347 368 51 25 chr11 112758898 112759135 -9084721 - L2 LINE L2 -373 3046 2804 5 1445 224 372 25 66 chr11 112759189 112759310 -9084546 + MER5B DNA MER1_type 3 118 -60 5 1445 297 258 132 96 chr11 112759424 112759591 -9084265 + MER58B DNA MER1_type 169 341 0 5 1445 221 338 0 29 chr11 112760177 112760247 -9083609 - MER5B DNA MER1_type -47 131 64 5 1445 664 228 53 7 chr11 112760303 112760453 -9083403 - MER5A DNA MER1_type 0 189 33 5 1445 285 29 0 0 chr11 112761707 112761741 -9082115 + (ATGGTG)n Simple_repeat Simple_repeat 4 37 0 5 1445 990 62 0 0 chr11 112762216 112762346 -9081510 + (GA)n Simple_repeat Simple_repeat 1 130 0 5 1445 676 230 0 23 chr11 112762346 112762475 -9081381 - B1_Mus1 SINE Alu -22 126 1 5 1445 2452 83 3 58 chr11 112762724 112763070 -9080786 + ORR1A2 LTR MaLR 1 327 0 5 1445 306 73 0 0 chr11 112763460 112763501 -9080355 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 5 1445 186 208 82 20 chr11 112764315 112764364 -9079492 + L3 LINE CR1 2318 2369 -2120 5 1445 424 309 64 47 chr11 112764599 112764833 -9079023 - MIRc SINE MIR -13 255 18 5 1445 274 23 47 0 chr11 112765026 112765069 -9078787 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1445 21 0 0 0 chr11 112766001 112766022 -9077834 + GC_rich Low_complexity Low_complexity 1 21 0 5 1445 443 304 70 5 chr11 112766649 112766834 -9077022 + B4A SINE B4 2 198 -94 5 1445 213 245 0 0 chr11 112766927 112766976 -9076880 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1445 923 172 132 21 chr11 112767180 112767370 -9076486 + B3 SINE B2 1 211 -5 5 1445 347 141 0 15 chr11 112767966 112768031 -9075825 + GA-rich Low_complexity Low_complexity 3 66 0 5 1445 850 281 42 21 chr11 112768887 112769171 -9074685 + B4A SINE B4 3 292 0 5 1445 570 29 0 0 chr11 112769210 112769278 -9074578 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1445 231 369 70 28 chr11 112769750 112769890 -9073966 + MIRc SINE MIR 18 158 -110 5 1445 189 107 0 0 chr11 112770819 112770847 -9073009 + (TCC)n Simple_repeat Simple_repeat 2 29 0 5 1445 404 91 0 15 chr11 112770948 112771015 -9072841 + (GGA)n Simple_repeat Simple_repeat 3 68 0 5 1445 1511 11 6 0 chr11 112771015 112771192 -9072664 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 1445 360 248 0 0 chr11 112771239 112771340 -9072516 + (CA)n Simple_repeat Simple_repeat 2 102 0 5 1445 237 248 88 128 chr11 112771349 112771497 -9072359 - MER103 DNA DNA -2 164 23 5 1445 240 284 22 11 chr11 112771562 112771651 -9072205 + CT-rich Low_complexity Low_complexity 1 90 0 5 1445 220 264 40 53 chr11 112771808 112771884 -9071972 - L2c LINE L2 -2 3385 3311 5 1445 808 226 19 28 chr11 112772915 112773129 -9070727 - B3 SINE B2 0 216 5 5 1445 585 0 0 0 chr11 112773199 112773264 -9070592 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 5 1445 471 142 0 0 chr11 112773298 112773404 -9070452 + (GA)n Simple_repeat Simple_repeat 1 106 0 5 1445 281 304 85 38 chr11 112773418 112773524 -9070332 - B1F SINE Alu -33 116 6 5 1445 671 211 15 8 chr11 112775038 112775172 -9068684 - ID_B1 SINE B4 -4 220 86 5 1445 249 292 160 50 chr11 112775429 112775548 -9068308 + MIRb SINE MIR 21 152 -116 5 1445 1126 242 95 32 chr11 112775863 112776209 -9067647 + ORR1D2 LTR MaLR 3 370 0 5 1445 772 217 107 123 chr11 112776357 112776686 -9067170 - ORR1E LTR MaLR -2 377 27 5 1445 233 239 164 43 chr11 112777127 112777267 -9066589 - Lx8 LINE L1 -17 7456 7300 5 1445 497 247 30 61 chr11 112777280 112777444 -9066412 + Lx8 LINE L1 6959 7117 -356 5 1445 182 284 75 0 chr11 112777782 112777849 -9066007 - MIR SINE MIR -72 190 119 5 1445 875 178 13 20 chr11 112777869 112778018 -9065838 + B1_Mur3 SINE Alu 1 148 -1 5 1445 644 323 92 73 chr11 112778055 112778423 -9065433 + MLT1J LTR MaLR 137 511 -1 5 1445 198 0 0 0 chr11 112779079 112779101 -9064755 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 5 1445 724 173 0 13 chr11 112779185 112779337 -9064519 + GA-rich Low_complexity Low_complexity 3 152 0 5 1445 613 230 148 105 chr11 112779529 112779608 -9064248 + B4 SINE B4 2 80 -212 5 1445 1250 83 0 11 chr11 112779608 112779790 -9064066 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1445 613 230 148 105 chr11 112779790 112779987 -9063869 + B4 SINE B4 81 290 -2 5 1445 186 103 0 0 chr11 112780553 112780582 -9063274 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 5 1445 1054 270 62 4 chr11 112783379 112783654 -9060202 + B4 SINE B4 2 292 0 5 1445 239 260 0 0 chr11 112783662 112783712 -9060144 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 5 1445 183 80 0 0 chr11 112783713 112783738 -9060118 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1445 233 315 129 15 chr11 112783833 112783965 -9059891 - LTR33 LTR ERVL -8 507 361 5 1445 465 18 0 0 chr11 112784438 112784484 -9059372 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1445 441 0 0 0 chr11 112784484 112784533 -9059323 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1445 465 18 0 0 chr11 112784533 112784542 -9059314 + (TA)n Simple_repeat Simple_repeat 1 9 0 5 1445 1083 283 9 76 chr11 112784551 112784880 -9058976 - MT2A LTR ERVL -85 448 142 5 1445 1293 170 4 18 chr11 112785436 112785664 -9058192 + URR1B DNA MER1_type 1 225 0 6 1445 1700 228 36 31 chr11 112786332 112786749 -9057107 - MTD LTR MaLR 0 419 1 6 1445 890 278 63 78 chr11 112787112 112787459 -9056397 - MTD LTR MaLR -43 376 35 6 1445 194 150 0 24 chr11 112788308 112788349 -9055507 + CT-rich Low_complexity Low_complexity 2 41 0 6 1445 27 0 0 0 chr11 112789077 112789104 -9054752 + AT_rich Low_complexity Low_complexity 1 27 0 6 1445 955 292 18 22 chr11 112789425 112789698 -9054158 + B4 SINE B4 5 276 -16 6 1445 423 0 0 0 chr11 112789712 112789759 -9054097 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1445 291 54 0 0 chr11 112790139 112790176 -9053680 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1445 432 116 26 35 chr11 112790559 112790675 -9053181 + CT-rich Low_complexity Low_complexity 1 115 0 6 1445 774 211 45 96 chr11 112792249 112792472 -9051384 + B3A SINE B2 7 216 0 6 1445 332 153 25 111 chr11 112793378 112793459 -9050397 + ID4_ SINE ID 1 74 -9 6 1445 204 67 0 0 chr11 112794755 112794785 -9049071 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1445 601 266 0 7 chr11 112794929 112795069 -9048787 - B1F SINE Alu -2 147 9 6 1445 470 257 151 0 chr11 112795198 112795350 -9048506 - MER58B DNA MER1_type 0 341 167 6 1445 254 308 0 117 chr11 112795477 112795580 -9048276 + L2c LINE L2 3294 3384 -3 6 1445 350 292 99 9 chr11 112795591 112795802 -9048054 + Lx9 LINE L1 7393 7622 -22 6 1445 186 133 0 0 chr11 112795836 112795866 -9047990 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1445 316 318 37 22 chr11 112796030 112796165 -9047691 - MER53 DNA hAT 0 193 57 6 1445 1030 231 18 59 chr11 112796220 112796506 -9047350 - B4 SINE B4 -18 274 1 6 1445 253 141 138 96 chr11 112796506 112796590 -9047266 - MER53 DNA hAT -98 95 5 6 1445 301 68 26 52 chr11 112797268 112797345 -9046511 + (CAAA)n Simple_repeat Simple_repeat 1 75 0 6 1445 605 330 48 48 chr11 112797930 112798286 -9045570 - ORR1E LTR MaLR -2 357 2 6 1445 1237 200 146 27 chr11 112798426 112798564 -9045292 + ORR1D1 LTR MaLR 7 147 -227 6 1445 252 0 0 0 chr11 112798564 112798592 -9045264 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1445 1237 200 146 27 chr11 112798592 112798782 -9045074 + ORR1D1 LTR MaLR 148 374 0 6 1445 424 262 9 0 chr11 112798827 112798934 -9044922 + PB1D10 SINE Alu 1 108 -9 6 1445 674 274 0 6 chr11 112799091 112799249 -9044607 + RSINE1 SINE B4 2 158 -7 6 1445 429 20 0 0 chr11 112799293 112799343 -9044513 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1445 1249 256 48 35 chr11 112799738 112799845 -9044011 - MTEa LTR MaLR 0 379 273 6 1445 189 0 0 0 chr11 112799845 112799866 -9043990 + (CAGGG)n Simple_repeat Simple_repeat 2 22 0 6 1445 1249 256 48 35 chr11 112799866 112800131 -9043725 - MTEa LTR MaLR -107 272 4 6 1445 235 273 61 0 chr11 112800365 112800431 -9043425 - MLT1L LTR MaLR -199 411 342 6 1445 3061 60 36 10 chr11 112800611 112801001 -9042855 + MTB LTR MaLR 1 400 0 6 1445 319 89 18 18 chr11 112801011 112801068 -9042788 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1445 397 257 558 0 chr11 112801095 112801265 -9042591 - B4A SINE B4 -2 290 26 6 1445 1848 44 40 0 chr11 112801270 112801498 -9042358 + L1_Mus1 LINE L1 6331 6567 0 6 1445 216 286 76 121 chr11 112802313 112802488 -9041368 - L2c LINE L2 -1 3386 3238 6 1445 1314 229 45 74 chr11 112802581 112802959 -9040897 - ORR1D2 LTR MaLR -3 367 1 6 1445 240 318 15 0 chr11 112802959 112803025 -9040831 - RSINE1 SINE B4 -3 162 96 6 1445 249 57 0 0 chr11 112804330 112804365 -9039491 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1445 393 216 0 83 chr11 112804366 112804462 -9039394 - B3A SINE B2 -103 92 5 6 1445 241 267 155 78 chr11 112804473 112804615 -9039241 - MTD LTR MaLR -13 357 205 6 1445 870 238 11 6 chr11 112804823 112805005 -9038851 - B4A SINE B4 -4 288 106 6 1445 296 183 16 48 chr11 112805053 112805116 -9038740 + RMER15 LTR ERVL 6 66 -509 6 1445 982 220 1 6 chr11 112805213 112805402 -9038454 - MTD LTR MaLR -228 191 3 6 1445 716 264 79 64 chr11 112805427 112805755 -9038101 + RMER15 LTR ERVL 48 446 -129 6 1445 261 0 0 0 chr11 112806439 112806468 -9037388 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 6 1445 380 274 0 0 chr11 112806641 112806714 -9037142 - B4A SINE B4 0 292 220 6 1445 487 201 77 63 chr11 112806745 112806888 -9036968 - B4A SINE B4 0 292 148 6 1445 277 192 0 19 chr11 112807771 112807824 -9036032 + MIR SINE MIR 183 234 -28 6 1445 474 319 18 18 chr11 112808944 112809110 -9034746 - HAL1-2a_MD LINE L1 -514 2510 2345 6 1445 1281 83 0 0 chr11 112809127 112809307 -9034549 + (TGG)n Simple_repeat Simple_repeat 1 180 0 6 1445 464 225 52 36 chr11 112809325 112809472 -9034384 + MTD LTR MaLR 177 380 -39 6 1445 465 19 0 0 chr11 112809474 112809528 -9034328 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1445 229 189 0 0 chr11 112809596 112809633 -9034223 - B4 SINE B4 -70 222 186 6 1445 435 290 8 31 chr11 112809652 112809780 -9034076 - B4 SINE B4 -162 130 6 6 1445 408 322 76 7 chr11 112810479 112810623 -9033233 + Lx8 LINE L1 6830 6983 -490 6 1445 406 342 112 4 chr11 112810646 112810922 -9032934 + Lx8 LINE L1 7070 7375 -98 6 1445 409 270 44 82 chr11 112811375 112811588 -9032268 - ORR1E LTR MaLR -111 248 24 6 1445 285 278 69 0 chr11 112811595 112811667 -9032189 + RMER30 DNA MER1_type 5 81 -121 6 1445 200 234 21 0 chr11 112811668 112811715 -9032141 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 6 1445 758 307 31 24 chr11 112811728 112812018 -9031838 + B4A SINE B4 1 292 0 6 1445 189 0 0 0 chr11 112812044 112812065 -9031791 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1445 345 314 19 0 chr11 112812065 112812170 -9031686 + RMER30 DNA MER1_type 95 201 -1 6 1445 274 273 21 54 chr11 112812192 112812285 -9031571 - MLT2B2 LTR ERVL -425 90 1 6 1445 520 360 25 53 chr11 112812998 112813282 -9030574 - MLT1B LTR MaLR 0 390 115 6 1445 688 235 169 14 chr11 112813322 112813529 -9030327 - RMER15 LTR ERVL -3 572 334 6 1445 270 333 9 9 chr11 112813738 112813844 -9030012 + MIRc SINE MIR 49 154 -114 6 1445 367 247 149 72 chr11 112814271 112814660 -9029196 + L1MA4 LINE L1 5493 5959 -341 6 1445 228 275 43 14 chr11 112815407 112815477 -9028379 - ID_B1 SINE B4 -92 132 61 6 1445 234 355 13 0 chr11 112815765 112815841 -9028015 + MER58B DNA MER1_type 219 295 -46 6 1445 331 367 0 6 chr11 112816559 112816718 -9027138 + (TG)n Simple_repeat Simple_repeat 1 158 0 6 1445 250 309 13 39 chr11 112816669 112816824 -9027032 + (TATATG)n Simple_repeat Simple_repeat 1 151 0 6 1445 336 291 256 6 chr11 112817605 112817781 -9026075 + RMER15 LTR ERVL 336 555 -20 6 1445 795 251 21 21 chr11 112818875 112819062 -9024794 + B4A SINE B4 83 269 -23 6 1445 438 53 0 0 chr11 112819062 112819119 -9024737 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1445 863 304 30 41 chr11 112820129 112820424 -9023432 - B4 SINE B4 0 292 1 6 1445 242 345 40 47 chr11 112821247 112821396 -9022460 + Lx9 LINE L1 7122 7269 -375 6 1445 222 37 0 0 chr11 112821396 112821423 -9022433 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 6 1445 259 287 0 11 chr11 112821690 112821778 -9022078 + CT-rich Low_complexity Low_complexity 1 87 0 6 1445 297 0 0 0 chr11 112822118 112822151 -9021705 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1445 786 266 73 10 chr11 112822759 112822964 -9020892 + B4 SINE B4 17 234 -58 6 1445 318 344 67 43 chr11 112822960 112823124 -9020732 + FAM SINE Alu 141 308 -3 6 1445 1031 156 0 0 chr11 112823167 112823327 -9020529 - B2_Mm2 SINE B2 -34 161 2 6 1445 255 203 0 0 chr11 112824633 112824692 -9019164 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1445 191 366 12 35 chr11 112824862 112824947 -9018909 + L3 LINE CR1 911 993 -3496 6 1445 481 279 0 37 chr11 112825481 112825615 -9018241 - RSINE1 SINE B4 -35 130 2 6 1445 527 146 28 119 chr11 112825695 112825804 -9018052 - B1_Mus1 SINE Alu -46 102 4 6 1445 270 0 0 0 chr11 112825900 112825930 -9017926 + (TTGG)n Simple_repeat Simple_repeat 4 33 0 6 1445 358 364 15 23 chr11 112825935 112826067 -9017789 - ID_B1 SINE B4 -6 218 88 6 1445 290 276 47 9 chr11 112826274 112826380 -9017476 + MER5A1 DNA MER1_type 11 120 -46 6 1445 450 0 0 0 chr11 112827566 112827616 -9016240 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1445 327 246 0 0 chr11 112827628 112827689 -9016167 - ID4_ SINE ID -8 75 15 6 1445 1012 224 131 57 chr11 112829036 112829372 -9014484 + MTD LTR MaLR 55 415 -4 6 1445 426 197 0 0 chr11 112829823 112829894 -9013962 + ID4 SINE ID 4 74 -9 6 1445 799 279 0 0 chr11 112830079 112830240 -9013616 + RSINE1 SINE B4 1 161 -4 6 1445 180 111 0 0 chr11 112830244 112830271 -9013585 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 6 1445 277 274 41 0 chr11 112831484 112831557 -9012299 - L3b LINE CR1 -283 199 124 6 1445 1091 268 50 18 chr11 112831561 112831903 -9011953 + L1M5 LINE L1 5350 5702 -422 6 1445 274 268 70 0 chr11 112832015 112832086 -9011770 + ID4_ SINE ID 2 77 -6 6 1445 468 0 0 0 chr11 112832089 112832141 -9011715 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1445 537 178 20 0 chr11 112832141 112832293 -9011563 + (CA)n Simple_repeat Simple_repeat 2 156 0 6 1445 342 0 0 0 chr11 112832568 112832606 -9011250 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1445 725 191 92 87 chr11 112832607 112832825 -9011031 - ID_B1 SINE B4 -5 219 1 6 1445 579 276 39 19 chr11 112832865 112833020 -9010836 - MER58A DNA MER1_type -1 223 66 6 1445 183 100 0 0 chr11 112833020 112833050 -9010806 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1445 204 97 0 0 chr11 112833073 112833104 -9010752 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1445 378 221 0 0 chr11 112833099 112833230 -9010626 + (TG)n Simple_repeat Simple_repeat 2 132 0 7 1445 261 75 0 0 chr11 112833237 112833277 -9010579 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 7 1445 265 222 74 0 chr11 112833300 112833354 -9010502 - ID4 SINE ID -15 68 11 7 1445 681 166 15 18 chr11 112835113 112835518 -9008338 + (TG)n Simple_repeat Simple_repeat 1 403 0 7 1445 917 276 52 45 chr11 112835560 112835848 -9008008 - B4A SINE B4 -2 290 1 7 1445 198 280 0 0 chr11 112836010 112836085 -9007771 + (TGG)n Simple_repeat Simple_repeat 3 77 0 7 1445 21 0 0 0 chr11 112837078 112837099 -9006757 + AT_rich Low_complexity Low_complexity 1 21 0 7 1445 1138 120 34 22 chr11 112837222 112837401 -9006455 + B2_Mm2 SINE B2 1 181 -14 7 1445 495 326 144 6 chr11 112837619 112837792 -9006064 + B4 SINE B4 1 197 -95 7 1445 630 39 0 0 chr11 112837862 112837939 -9005917 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1445 432 0 0 0 chr11 112837939 112837986 -9005870 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1445 356 292 97 71 chr11 112839027 112839182 -9004674 + MER3 DNA MER1_type 19 177 -32 7 1445 285 16 46 46 chr11 112839485 112839550 -9004306 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 7 1445 459 0 0 0 chr11 112839641 112839692 -9004164 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1445 214 311 14 0 chr11 112840982 112841056 -9002800 - MIR SINE MIR -36 226 152 7 1445 331 256 0 13 chr11 112841199 112841278 -9002578 + Charlie5 DNA MER1_type 44 121 -2503 7 1445 606 312 42 35 chr11 112841402 112841691 -9002165 + B4A SINE B4 2 292 0 7 1445 385 357 6 6 chr11 112841699 112841871 -9001985 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 1445 203 239 15 0 chr11 112841896 112841963 -9001893 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1445 359 277 9 56 chr11 112842264 112842371 -9001485 + B4A SINE B4 29 130 -162 7 1445 255 320 69 20 chr11 112842389 112842491 -9001365 + B4A SINE B4 186 292 0 7 1445 312 253 33 11 chr11 112842497 112842589 -9001267 + (CATA)n Simple_repeat Simple_repeat 4 97 0 7 1445 517 291 7 45 chr11 112843111 112843266 -9000590 + B1F2 SINE Alu 1 149 0 7 1445 288 0 0 0 chr11 112844439 112844471 -8999385 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1445 222 245 130 60 chr11 112845090 112845190 -8998666 - MIR SINE MIR -59 149 43 7 1445 513 47 0 0 chr11 112845391 112845455 -8998401 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1445 431 169 0 0 chr11 112845618 112845689 -8998167 - PB1D10 SINE Alu -1 116 46 7 1445 306 278 67 34 chr11 112846015 112846164 -8997692 - MTEa LTR MaLR -1 378 216 7 1445 304 353 128 39 chr11 112846341 112846677 -8997179 - L1MC4 LINE L1 -541 7501 7136 7 1445 1160 242 92 33 chr11 112846724 112847061 -8996795 - ORR1E LTR MaLR -2 357 1 7 1445 218 219 16 0 chr11 112847096 112847160 -8996696 + (TCTG)n Simple_repeat Simple_repeat 3 67 0 7 1445 529 310 83 36 chr11 112848128 112848406 -8995450 + MLT1B LTR MaLR 92 382 -8 7 1445 183 114 0 0 chr11 112850053 112850088 -8993768 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 7 1445 261 0 0 0 chr11 112850089 112850118 -8993738 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1445 369 0 0 0 chr11 112850118 112850158 -8993698 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1445 193 373 45 40 chr11 112851030 112851206 -8992650 + MIRb SINE MIR 55 231 -37 7 1445 237 338 0 24 chr11 112852681 112852763 -8991093 - ID4 SINE ID 0 83 4 7 1445 331 257 85 42 chr11 112852780 112852898 -8990958 - B1F SINE Alu -10 139 17 7 1446 1023 291 42 54 chr11 112854223 112854652 -8989204 + Lx8 LINE L1 7050 7473 0 7 1446 213 154 0 0 chr11 112854721 112854760 -8989096 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1446 752 329 52 25 chr11 112854767 112855094 -8988762 - MER2B DNA MER2_type 0 336 1 7 1446 1071 246 152 11 chr11 112855094 112855370 -8988486 - MLT2C1 LTR ERVL -43 354 40 7 1446 830 255 65 69 chr11 112855586 112855877 -8987979 + B4 SINE B4 3 292 0 7 1446 215 170 21 0 chr11 112855904 112855951 -8987905 + (CATA)n Simple_repeat Simple_repeat 1 48 0 7 1446 333 0 0 0 chr11 112855978 112856015 -8987841 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1446 680 219 47 0 chr11 112856016 112856144 -8987712 - B1_Mur1 SINE Alu -15 134 1 7 1446 838 321 75 22 chr11 112856341 112856663 -8987193 - MLT1A0 LTR MaLR -20 345 7 7 1446 418 295 77 5 chr11 112856973 112857167 -8986689 + Lx7 LINE L1 7205 7412 -284 7 1446 243 125 0 0 chr11 112857186 112857226 -8986630 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1446 28 29 0 0 chr11 112857312 112857347 -8986509 + AT_rich Low_complexity Low_complexity 1 35 0 7 1446 180 97 0 0 chr11 112857516 112857547 -8986309 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1446 180 250 20 20 chr11 112858331 112858380 -8985476 + L3b LINE CR1 267 315 -167 7 1446 240 271 0 0 chr11 112858776 112858835 -8985021 + Lx7 LINE L1 7254 7312 -384 7 1446 294 295 95 0 chr11 112860058 112860163 -8983693 + PB1D7 SINE Alu 3 117 -3 7 1446 374 217 355 8 chr11 112860165 112860289 -8983567 + ID_B1 SINE B4 10 176 -48 7 1446 278 222 0 120 chr11 112860226 112860318 -8983538 + PB1D10 SINE Alu 34 114 -3 7 1446 1104 146 255 64 chr11 112861727 112861906 -8981950 + ORR1D1 LTR MaLR 1 217 -157 7 1446 306 0 0 0 chr11 112861906 112861940 -8981916 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1446 1104 146 255 64 chr11 112861940 112862034 -8981822 + ORR1D1 LTR MaLR 218 340 -34 7 1446 576 0 0 0 chr11 112862034 112862098 -8981758 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 7 1446 1104 146 255 64 chr11 112862098 112862137 -8981719 + ORR1D1 LTR MaLR 341 373 -1 7 1446 289 246 15 0 chr11 112862223 112862288 -8981568 + tRNA-Ala-GCA tRNA tRNA 1 66 -9 7 1446 366 23 0 0 chr11 112862288 112862331 -8981525 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1446 651 234 21 149 chr11 112862675 112862916 -8980940 + MER20 DNA MER1_type 7 216 -3 7 1446 210 236 18 0 chr11 112862984 112863039 -8980817 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1446 836 250 11 6 chr11 112863049 112863230 -8980626 - B3A SINE B2 -16 182 1 7 1446 423 0 0 0 chr11 112863933 112863980 -8979876 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1446 273 267 53 0 chr11 112864438 112864513 -8979343 - MIRm SINE MIR -113 163 85 7 1446 871 337 65 74 chr11 112864925 112865463 -8978393 - MT2A LTR ERVL 0 533 1 7 1446 224 278 133 1 chr11 112865580 112865688 -8978168 - MIRc SINE MIR -89 173 55 7 1446 235 278 48 58 chr11 112865935 112866038 -8977818 - MLT1J1 LTR MaLR -5 443 342 7 1446 252 381 26 45 chr11 112866120 112866274 -8977582 - MLT1J1 LTR MaLR -226 218 68 7 1446 906 350 72 36 chr11 112866393 112866974 -8976882 - L3 LINE CR1 -479 4010 3409 7 1446 205 326 7 123 chr11 112867029 112867183 -8976673 - MIR3 SINE MIR -38 170 35 7 1446 326 23 0 23 chr11 112867183 112867227 -8976629 + (CCCCCA)n Simple_repeat Simple_repeat 3 45 0 7 1446 428 260 162 51 chr11 112867690 112867925 -8975931 - MamRep434 DNA TcMar -141 285 25 7 1446 342 223 84 15 chr11 112868112 112868227 -8975629 - MIRc SINE MIR -39 229 112 7 1446 829 247 168 12 chr11 112868238 112868488 -8975368 + B4 SINE B4 1 289 -3 7 1446 294 271 24 10 chr11 112868509 112868798 -8975058 + (CA)n Simple_repeat Simple_repeat 1 293 0 7 1446 855 98 0 0 chr11 112868928 112869060 -8974796 + (GAAA)n Simple_repeat Simple_repeat 3 134 0 7 1446 1052 16 0 8 chr11 112869061 112869188 -8974668 + (GGAAA)n Simple_repeat Simple_repeat 5 130 0 7 1446 930 96 0 0 chr11 112869294 112869429 -8974427 + (GAAA)n Simple_repeat Simple_repeat 3 137 0 7 1446 278 258 133 10 chr11 112869513 112869611 -8974245 + ORSL-2b DNA Tip100 396 505 -3 7 1446 965 228 59 5 chr11 112871287 112871490 -8972366 + ID_B1 SINE B4 1 214 -10 7 1446 319 301 130 72 chr11 112871511 112871787 -8972069 + B4A SINE B4 1 292 0 7 1446 202 333 118 0 chr11 112872634 112872736 -8971120 - MIRb SINE MIR -35 233 120 7 1446 210 264 153 15 chr11 112872704 112872835 -8971021 - MIRm SINE MIR -124 152 4 7 1446 528 59 0 0 chr11 112873702 112873770 -8970086 + (TTC)n Simple_repeat Simple_repeat 2 69 0 7 1446 1178 259 97 29 chr11 112873946 112874296 -8969560 - MTEa LTR MaLR 0 379 6 7 1446 432 0 0 0 chr11 112875598 112875646 -8968210 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1446 342 0 0 0 chr11 112876323 112876361 -8967495 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1446 315 0 0 0 chr11 112876361 112876395 -8967461 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1446 213 119 0 0 chr11 112876551 112876593 -8967263 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 7 1446 585 184 84 46 chr11 112876599 112876730 -8967126 - B4 SINE B4 -69 223 88 7 1446 339 267 49 113 chr11 112877042 112877245 -8966611 - MER3 DNA MER1_type -4 205 16 7 1446 205 289 0 37 chr11 112877538 112877592 -8966264 + (CGTG)n Simple_repeat Simple_repeat 3 54 0 7 1446 180 0 0 0 chr11 112878420 112878440 -8965416 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 7 1446 254 360 130 0 chr11 112879772 112879872 -8963984 - MER81 DNA AcHobo -1 113 1 7 1446 303 261 54 0 chr11 112879882 112879974 -8963882 + L1MCa LINE L1 1855 1951 -4557 7 1446 1526 228 0 16 chr11 112880069 112880377 -8963479 - Lx5 LINE L1 -12 7038 6736 7 1446 1029 140 165 5 chr11 112880441 112880635 -8963221 - URR1A DNA MER1_type 0 226 2 7 1446 273 268 95 24 chr11 112880946 112881072 -8962784 + B1F SINE Alu 5 139 -10 7 1446 239 254 37 96 chr11 112882082 112882217 -8961639 + Charlie7a DNA MER1_type 104 230 -42 7 1446 326 269 144 77 chr11 112882167 112882452 -8961404 - RSINE1 SINE B4 -22 270 1 7 1446 187 133 22 22 chr11 112882724 112882770 -8961086 + GA-rich Low_complexity Low_complexity 2 47 0 7 1446 2015 119 3 88 chr11 112883682 112884033 -8959823 - ORR1A4 LTR MaLR -8 321 1 8 1446 443 195 375 68 chr11 112884078 112884245 -8959611 + B4 SINE B4 2 223 -69 8 1446 675 306 50 11 chr11 112884245 112884506 -8959350 + B4A SINE B4 4 274 -18 8 1446 420 67 0 0 chr11 112884536 112884596 -8959260 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1446 186 191 0 0 chr11 112884614 112884656 -8959200 + GA-rich Low_complexity Low_complexity 2 43 0 8 1446 343 353 0 0 chr11 112884715 112884919 -8958937 + (CATATA)n Simple_repeat Simple_repeat 1 204 0 8 1446 245 211 0 27 chr11 112884922 112884995 -8958861 + (CATA)n Simple_repeat Simple_repeat 4 74 0 8 1446 285 396 7 0 chr11 112884998 112885152 -8958704 + (CA)n Simple_repeat Simple_repeat 2 156 0 8 1446 836 249 121 26 chr11 112885537 112885753 -8958103 + B4 SINE B4 1 215 -77 8 1446 234 0 0 0 chr11 112885753 112885779 -8958077 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1446 836 249 121 26 chr11 112885779 112885826 -8958030 + B4 SINE B4 216 288 -4 8 1446 330 290 2 2 chr11 112886001 112886094 -8957762 - B4 SINE B4 -4 288 216 8 1446 826 216 53 21 chr11 112886105 112886294 -8957562 - B3A SINE B2 -2 196 2 8 1446 333 286 37 37 chr11 112886294 112886363 -8957493 - B4 SINE B4 -61 231 163 8 1446 756 286 27 67 chr11 112886350 112886575 -8957281 - B4 SINE B4 -75 217 2 8 1446 30 0 0 0 chr11 112886583 112886613 -8957243 + AT_rich Low_complexity Low_complexity 1 30 0 8 1446 396 103 0 0 chr11 112887292 112887350 -8956506 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1446 414 0 0 0 chr11 112887392 112887438 -8956418 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1446 400 305 202 37 chr11 112887452 112887694 -8956162 - B4 SINE B4 -10 282 1 8 1446 294 302 86 20 chr11 112888652 112888804 -8955052 + ID_B1 SINE B4 1 162 -62 8 1446 433 243 0 26 chr11 112888961 112889117 -8954739 + (CATATA)n Simple_repeat Simple_repeat 4 155 0 8 1446 256 233 0 16 chr11 112889118 112889179 -8954677 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 8 1446 349 325 65 7 chr11 112890395 112890550 -8953306 - MER20 DNA MER1_type -9 210 47 8 1446 641 246 194 48 chr11 112890813 112890993 -8952863 + B4 SINE B4 2 222 -70 8 1446 803 105 8 0 chr11 112890993 112891117 -8952739 + (GAA)n Simple_repeat Simple_repeat 2 126 0 8 1446 641 246 194 48 chr11 112891117 112891188 -8952668 + B4 SINE B4 223 290 -2 8 1446 5046 68 9 1 chr11 112891801 112892550 -8951306 - L1Md_F2 LINE L1 0 6582 5891 8 1446 342 0 0 0 chr11 112892661 112892699 -8951157 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1446 883 217 10 26 chr11 112893435 112893629 -8950227 - ID_B1 SINE B4 -9 215 25 8 1446 350 289 24 24 chr11 112896403 112896417 -8947439 - MLT2B3 LTR ERVL -430 124 1 8 1446 351 245 0 109 chr11 112896417 112896527 -8947329 - MTEa LTR MaLR -281 98 1 8 1446 696 286 93 50 chr11 112896690 112896970 -8946886 + B4A SINE B4 1 292 0 8 1446 258 32 0 0 chr11 112896980 112897011 -8946845 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1446 733 256 85 35 chr11 112897739 112897998 -8945858 + B4A SINE B4 3 274 -18 8 1446 207 220 40 0 chr11 112898774 112898824 -8945032 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1446 602 227 84 18 chr11 112898828 112898994 -8944862 - B4A SINE B4 0 292 116 8 1446 582 209 0 0 chr11 112899622 112899751 -8944105 + (TA)n Simple_repeat Simple_repeat 2 130 0 8 1446 237 333 13 0 chr11 112899809 112899884 -8943972 - L2c LINE L2 -222 3165 3090 8 1446 213 39 0 0 chr11 112903149 112903175 -8940681 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1446 459 0 0 0 chr11 112903175 112903225 -8940631 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1446 846 236 0 16 chr11 112903373 112903558 -8940298 - B3A SINE B2 -16 182 1 8 1446 524 260 73 0 chr11 112903559 112903682 -8940174 - B4 SINE B4 -69 223 92 8 1446 518 67 13 0 chr11 112906679 112906754 -8937102 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1446 22 0 0 0 chr11 112907446 112907468 -8936388 + AT_rich Low_complexity Low_complexity 1 22 0 8 1446 213 39 0 0 chr11 112907972 112907998 -8935858 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1446 362 259 0 74 chr11 112908272 112908393 -8935463 - PB1D7 SINE Alu -8 112 1 8 1446 249 279 35 11 chr11 112908701 112908788 -8935068 + MLT1D LTR MaLR 300 388 -117 8 1446 391 289 40 100 chr11 112909133 112909283 -8934573 + MIRb SINE MIR 78 218 -50 8 1446 363 347 76 45 chr11 112909463 112909777 -8934079 + MLT1J LTR MaLR 125 448 -64 8 1446 274 258 0 0 chr11 112909834 112909900 -8933956 + MER5A DNA MER1_type 23 88 -101 8 1446 202 318 30 0 chr11 112909983 112910049 -8933807 + MER5A DNA MER1_type 119 186 -3 8 1446 813 79 0 0 chr11 112910253 112910367 -8933489 + (TG)n Simple_repeat Simple_repeat 1 114 0 8 1446 620 255 41 0 chr11 112910380 112910525 -8933331 - B3A SINE B2 -47 151 1 8 1446 480 156 0 0 chr11 112910532 112910622 -8933234 + GA-rich Low_complexity Low_complexity 3 92 0 8 1446 327 288 83 98 chr11 112910677 112910954 -8932902 - B4 SINE B4 -18 274 2 8 1446 271 277 11 11 chr11 112910956 112911051 -8932805 + MER5B DNA MER1_type 2 96 -82 8 1446 24 0 0 0 chr11 112911683 112911707 -8932149 + AT_rich Low_complexity Low_complexity 1 24 0 8 1446 546 264 154 11 chr11 112911707 112911818 -8932038 - Lx9 LINE L1 -4 7640 7510 8 1446 225 0 0 0 chr11 112911818 112911843 -8932013 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1446 546 264 154 11 chr11 112911843 112912010 -8931846 - Lx9 LINE L1 -135 7509 7322 8 1446 548 230 107 74 chr11 112912030 112912274 -8931582 + Lx9 LINE L1 6940 7191 -453 8 1446 213 282 0 24 chr11 112912406 112912533 -8931323 + GA-rich Low_complexity Low_complexity 1 124 0 8 1446 802 163 14 7 chr11 112912547 112912695 -8931161 + B1_Mur1 SINE Alu 1 149 0 8 1446 27 0 0 0 chr11 112913346 112913373 -8930483 + AT_rich Low_complexity Low_complexity 1 27 0 8 1446 455 271 30 7 chr11 112914461 112914776 -8929080 + (TGGA)n Simple_repeat Simple_repeat 1 322 0 8 1446 185 154 26 0 chr11 112914792 112914831 -8929025 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 8 1446 231 36 0 0 chr11 112915225 112915253 -8928603 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1446 8703 11 0 0 chr11 112915291 112916817 -8927039 - L1Md_T LINE L1 -1 6581 5056 8 1446 360 0 0 0 chr11 112916887 112916927 -8926929 + (TC)n Simple_repeat Simple_repeat 2 41 0 8 1446 423 0 0 0 chr11 112916927 112916973 -8926883 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1446 189 107 0 0 chr11 112917203 112917231 -8926625 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1446 219 292 15 30 chr11 112917232 112917244 -8926612 - ID4_ SINE ID 0 83 49 8 1446 223 255 21 0 chr11 112917244 112917291 -8926565 - ID SINE ID -151 73 26 8 1446 225 244 0 0 chr11 112918028 112918073 -8925783 + C-rich Low_complexity Low_complexity 5 49 0 8 1446 468 0 0 0 chr11 112918668 112918720 -8925136 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1446 340 307 174 47 chr11 112918869 112919190 -8924666 + MLT1D LTR MaLR 28 389 -116 8 1446 233 229 42 28 chr11 112919261 112919333 -8924523 - ID4 SINE ID -10 73 1 8 1446 266 262 82 39 chr11 112919948 112920100 -8923756 - MLT1C LTR MaLR -290 215 59 8 1446 522 285 7 20 chr11 112920149 112920296 -8923560 - RSINE1 SINE B4 -9 156 12 8 1446 421 173 0 0 chr11 112920392 112920467 -8923389 - ID4_ SINE ID -4 79 5 8 1446 216 255 30 69 chr11 112921345 112921446 -8922410 - MIRc SINE MIR -45 223 127 8 1446 343 249 211 58 chr11 112922873 112923071 -8920785 + B4 SINE B4 1 228 -64 8 1446 515 283 0 0 chr11 112923092 112923212 -8920644 + RSINE1 SINE B4 8 127 -38 8 1446 1179 94 0 0 chr11 112923247 112923427 -8920429 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1446 257 264 29 91 chr11 112923765 112923940 -8919916 - Lx7 LINE L1 -17 7679 7516 8 1446 252 143 0 0 chr11 112925236 112925278 -8918578 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1446 196 200 60 0 chr11 112927473 112927523 -8916333 - MIRc SINE MIR -102 166 114 8 1446 555 0 136 0 chr11 112928358 112928513 -8915343 + (CCTG)n Simple_repeat Simple_repeat 4 179 0 8 1446 186 43 0 0 chr11 112928824 112928847 -8915009 + (CTCA)n Simple_repeat Simple_repeat 1 23 0 8 1446 338 345 0 0 chr11 112928847 112928957 -8914899 - PB1D10 SINE Alu -7 110 1 8 1446 207 316 21 10 chr11 112929219 112929315 -8914541 + (TATATG)n Simple_repeat Simple_repeat 6 102 0 8 1446 384 266 0 41 chr11 112929343 112929441 -8914415 - B4 SINE B4 -197 95 2 8 1446 24 0 0 0 chr11 112929446 112929470 -8914386 + AT_rich Low_complexity Low_complexity 1 24 0 8 1446 649 274 10 36 chr11 112930218 112930411 -8913445 - B4 SINE B4 0 292 105 8 1446 2497 77 0 0 chr11 112930624 112930951 -8912905 - ORR1A2 LTR MaLR 0 327 1 8 1446 519 69 0 0 chr11 112931416 112931488 -8912368 + (TG)n Simple_repeat Simple_repeat 1 72 0 8 1446 495 308 75 12 chr11 112931585 112931746 -8912110 - B4A SINE B4 -118 174 4 8 1446 261 226 0 0 chr11 112932054 112932138 -8911718 + GA-rich Low_complexity Low_complexity 2 85 0 8 1446 279 0 0 0 chr11 112933919 112933950 -8909906 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1446 465 19 0 0 chr11 112934287 112934341 -8909515 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1446 201 74 0 0 chr11 112934824 112934851 -8909005 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 8 1446 387 203 0 0 chr11 112934858 112934932 -8908924 - ID4 SINE ID -1 82 9 8 1446 752 194 7 28 chr11 112935313 112935517 -8908339 + B3 SINE B2 3 195 0 8 1446 182 229 20 59 chr11 112936411 112936462 -8907394 - MIR SINE MIR 0 262 214 8 1446 825 269 25 0 chr11 112936515 112936712 -8907144 - ID_B1 SINE B4 -1 223 22 8 1446 2358 66 0 9 chr11 112937030 112937352 -8906504 + ORR1A2 LTR MaLR 1 319 -8 8 1446 198 0 0 0 chr11 112937441 112937463 -8906393 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 9 1446 2375 259 96 97 chr11 112937841 112938346 -8905510 + RCHARR1 DNA MER1_type 1 508 -466 9 1446 817 184 201 0 chr11 112938346 112938525 -8905331 + B3 SINE B2 2 216 0 9 1446 2375 259 96 97 chr11 112938525 112938767 -8905089 + RCHARR1 DNA MER1_type 509 734 -240 9 1446 1330 70 42 11 chr11 112938767 112938956 -8904900 - B2_Mm2 SINE B2 0 195 1 9 1446 2375 259 96 97 chr11 112938956 112939018 -8904838 + RCHARR1 DNA MER1_type 735 791 -183 9 1446 3350 20 5 0 chr11 112939018 112939412 -8904444 - MTA_Mm LTR MaLR 0 396 1 9 1446 2375 259 96 97 chr11 112939412 112939575 -8904281 + RCHARR1 DNA MER1_type 792 974 0 9 1446 279 133 0 0 chr11 112940105 112940150 -8903706 + (GGA)n Simple_repeat Simple_repeat 1 45 0 9 1446 564 87 0 0 chr11 112941076 112941168 -8902688 + (GA)n Simple_repeat Simple_repeat 1 92 0 9 1446 545 235 0 0 chr11 112941359 112941474 -8902382 - PB1D10 SINE Alu 0 117 3 9 1446 489 34 0 0 chr11 112942013 112942072 -8901784 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 9 1446 192 366 14 0 chr11 112942196 112942267 -8901589 - L2b LINE L2 -20 3355 3284 9 1446 261 327 88 10 chr11 112942490 112942592 -8901264 + PB1D10 SINE Alu 1 110 -7 9 1446 243 0 0 0 chr11 112943337 112943364 -8900492 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1446 238 337 10 21 chr11 112943627 112943724 -8900132 - MER20 DNA MER1_type -3 216 121 9 1446 427 219 0 43 chr11 112944064 112944226 -8899630 + GA-rich Low_complexity Low_complexity 1 155 0 9 1446 607 318 30 151 chr11 112944627 112944964 -8898892 + MLT1C LTR MaLR 1 296 -171 9 1446 387 0 0 0 chr11 112946099 112946142 -8897714 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1446 200 143 24 0 chr11 112947700 112947742 -8896114 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 1446 209 208 0 0 chr11 112948100 112948148 -8895708 + A-rich Low_complexity Low_complexity 1 48 0 9 1446 453 36 0 0 chr11 112949788 112949843 -8894013 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1446 619 351 101 79 chr11 112949853 112949906 -8893950 + L1MC4 LINE L1 6972 7027 -1015 9 1446 207 0 0 0 chr11 112949906 112949929 -8893927 + (TAA)n Simple_repeat Simple_repeat 2 24 0 9 1446 619 351 101 79 chr11 112949929 112950343 -8893513 + L1MC4 LINE L1 7028 7477 -565 9 1446 632 183 121 8 chr11 112950343 112950475 -8893381 + B1F1 SINE Alu 1 147 -2 9 1446 619 351 101 79 chr11 112950475 112950927 -8892929 + L1MC4 LINE L1 7478 7902 -140 9 1446 252 0 0 0 chr11 112950927 112950955 -8892901 + (GA)n Simple_repeat Simple_repeat 1 28 0 9 1446 619 351 101 79 chr11 112950955 112951064 -8892792 + L1MC4 LINE L1 7903 8024 -18 9 1446 2772 101 23 62 chr11 112952663 112953097 -8890759 + MTC LTR MaLR 5 421 0 9 1446 531 287 181 52 chr11 112953739 112954048 -8889808 + MLT1A LTR MaLR 26 374 0 9 1446 412 272 22 18 chr11 112954842 112955073 -8888783 + GA-rich Low_complexity Low_complexity 1 232 0 9 1446 228 211 0 0 chr11 112955101 112955139 -8888717 + (CGA)n Simple_repeat Simple_repeat 2 39 0 9 1446 417 308 81 22 chr11 112955754 112955890 -8887966 - B1F2 SINE Alu -1 148 5 9 1446 310 231 232 21 chr11 112956200 112956390 -8887466 + MER113 DNA MER1_type 177 406 -115 9 1446 229 289 33 11 chr11 112956392 112956483 -8887373 - MER20 DNA MER1_type -4 215 123 9 1446 773 242 161 0 chr11 112956491 112956677 -8887179 + ID_B1 SINE B4 8 223 -1 9 1446 298 337 19 19 chr11 112957962 112958068 -8885788 + B4A SINE B4 37 142 -150 9 1446 452 342 25 123 chr11 112958737 112959061 -8884795 + B4A SINE B4 1 292 0 9 1446 227 288 0 52 chr11 112960902 112960979 -8882877 + G-rich Low_complexity Low_complexity 1 73 0 9 1446 222 91 0 0 chr11 112960982 112961015 -8882841 + (GGAAA)n Simple_repeat Simple_repeat 1 33 0 9 1446 678 58 0 0 chr11 112961015 112961102 -8882754 + (GAGAA)n Simple_repeat Simple_repeat 2 88 0 9 1446 1022 183 64 30 chr11 112961103 112961306 -8882550 - B3 SINE B2 0 216 7 9 1446 251 54 27 0 chr11 112961316 112961353 -8882503 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 9 1446 200 31 62 0 chr11 112961522 112961554 -8882302 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 9 1446 463 96 12 12 chr11 112961564 112961648 -8882208 + (CA)n Simple_repeat Simple_repeat 1 84 0 9 1446 185 258 103 29 chr11 112962171 112962239 -8881617 + MIRc SINE MIR 111 183 -85 9 1446 408 276 19 82 chr11 112963617 112963775 -8880081 + B1F1 SINE Alu 1 148 -1 9 1446 257 343 22 7 chr11 112964341 112964476 -8879380 + (CA)n Simple_repeat Simple_repeat 2 138 0 9 1446 870 233 98 35 chr11 112965359 112965613 -8878243 + B4A SINE B4 1 270 -22 9 1446 525 285 8 8 chr11 112967338 112967462 -8876394 - ID_B1 SINE B4 -19 205 82 9 1446 336 270 33 33 chr11 112967859 112967951 -8875905 + MTEa LTR MaLR 22 113 -266 9 1446 210 195 0 0 chr11 112967953 112967994 -8875862 - MIR SINE MIR -102 106 66 9 1446 233 358 50 59 chr11 112968262 112968482 -8875374 - Charlie8 DNA MER1_type -2204 224 7 9 1446 333 0 0 0 chr11 112969172 112969209 -8874647 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 9 1446 186 317 165 8 chr11 112969686 112969807 -8874049 - MIRc SINE MIR -6 262 123 9 1446 319 304 0 52 chr11 112969922 112970019 -8873837 + B4A SINE B4 14 105 -187 9 1446 224 59 29 0 chr11 112970040 112970074 -8873782 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1446 401 366 125 14 chr11 112970955 112971160 -8872696 + B4A SINE B4 2 230 -62 9 1446 814 206 0 7 chr11 112971160 112971302 -8872554 + RSINE1 SINE B4 3 143 -22 9 1446 324 70 0 0 chr11 112971321 112971364 -8872492 + (CATA)n Simple_repeat Simple_repeat 2 44 0 9 1446 471 18 0 0 chr11 112971469 112971525 -8872331 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1446 1024 271 40 36 chr11 112971848 112972124 -8871732 - B4 SINE B4 0 292 16 9 1446 477 276 54 23 chr11 112972147 112972277 -8871579 - MER20 DNA MER1_type -56 163 30 9 1446 1090 191 77 0 chr11 112972784 112972993 -8870863 + URR1A DNA MER1_type 1 225 -1 9 1446 383 52 17 0 chr11 112973555 112973613 -8870243 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 9 1446 666 152 85 31 chr11 112973616 112973745 -8870111 - B1_Mur4 SINE Alu -13 137 2 9 1446 516 316 103 0 chr11 112973841 112973977 -8869879 + RSINE1 SINE B4 1 150 -15 9 1446 192 77 0 0 chr11 112974037 112974063 -8869793 + (GAA)n Simple_repeat Simple_repeat 2 27 0 9 1446 355 294 11 0 chr11 112974132 112974224 -8869632 - B1F1 SINE Alu -6 143 51 9 1446 414 127 0 0 chr11 112974435 112974506 -8869350 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 1446 849 287 55 0 chr11 112974993 112975230 -8868626 - B4A SINE B4 -42 250 1 9 1446 429 233 42 155 chr11 112975345 112975558 -8868298 + MER20 DNA MER1_type 31 219 0 9 1446 1415 62 17 6 chr11 112976834 112977013 -8866843 + B2_Mm2 SINE B2 1 181 -14 9 1446 233 167 13 40 chr11 112977383 112977458 -8866398 + (TTTG)n Simple_repeat Simple_repeat 3 75 0 9 1446 1050 309 136 12 chr11 112977921 112978252 -8865604 + MTD LTR MaLR 18 389 -30 9 1446 195 69 0 0 chr11 112978263 112978292 -8865564 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1446 777 191 0 22 chr11 112979030 112979169 -8864687 + B1_Mur2 SINE Alu 7 142 -7 9 1446 1790 181 38 24 chr11 112979386 112979755 -8864101 - ORR1D1 LTR MaLR 0 374 1 9 1446 794 124 0 0 chr11 112980181 112980294 -8863562 - B1_Mur4 SINE Alu -37 113 1 9 1446 374 314 120 44 chr11 112980294 112980544 -8863312 + Charlie1a DNA MER1_type 472 740 -715 9 1446 376 308 14 7 chr11 112980584 112980728 -8863128 + Charlie1a DNA MER1_type 807 951 -504 9 1446 574 276 119 6 chr11 112980753 112980921 -8862935 + ID_B1 SINE B4 35 221 -3 9 1446 284 244 70 20 chr11 112980933 112981127 -8862729 + Charlie1a DNA MER1_type 1104 1395 -60 9 1446 537 283 72 108 chr11 112981554 112981831 -8862025 + B4 SINE B4 3 269 -23 9 1446 407 19 0 19 chr11 112981835 112981888 -8861968 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1447 219 114 29 0 chr11 112984549 112984584 -8859272 - MIRb SINE MIR -42 226 191 9 1447 997 113 12 0 chr11 112984616 112984784 -8859072 + (GGA)n Simple_repeat Simple_repeat 3 172 0 9 1447 216 280 0 0 chr11 112985126 112985226 -8858630 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1447 1161 280 10 7 chr11 112985234 112985522 -8858334 - B4A SINE B4 -2 290 2 9 1447 364 324 32 58 chr11 112985725 112985879 -8857977 + MLT1N2 LTR MaLR 109 258 -304 9 1447 531 31 0 0 chr11 112986187 112986252 -8857604 + (TG)n Simple_repeat Simple_repeat 1 65 0 9 1447 315 311 127 64 chr11 112986334 112986815 -8857041 - L1ME3A LINE L1 -6 6167 5657 9 1447 683 311 10 40 chr11 112986855 112987056 -8856800 - B4 SINE B4 0 292 98 9 1447 323 279 0 0 chr11 112987104 112987183 -8856673 - B4 SINE B4 -206 86 8 9 1447 491 292 72 54 chr11 112987784 112988005 -8855851 - MER102a DNA MER1_type -50 280 56 9 1447 528 16 0 0 chr11 112988338 112988399 -8855457 + (TCC)n Simple_repeat Simple_repeat 2 62 0 9 1447 345 47 0 0 chr11 112988888 112988931 -8854925 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1447 498 17 0 0 chr11 112989993 112990052 -8853804 + (GA)n Simple_repeat Simple_repeat 1 59 0 9 1447 949 181 136 0 chr11 112990353 112990552 -8853304 + URR1A DNA MER1_type 1 226 0 9 1447 181 264 52 103 chr11 112991344 112991441 -8852415 + L3 LINE CR1 3118 3209 -1280 9 1447 214 238 122 24 chr11 112991777 112991859 -8851997 - L3b LINE CR1 -209 273 184 9 1447 189 205 26 0 chr11 112992020 112992059 -8851797 - MER5A DNA MER1_type -105 84 45 9 1447 2950 15 0 0 chr11 112992527 112992865 -8850991 + ORR1A0 LTR MaLR 1 338 -8 9 1447 539 314 33 2 chr11 112992902 112993062 -8850794 - MIR SINE MIR -79 189 25 9 1447 252 0 0 0 chr11 112994020 112994048 -8849808 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 9 1447 225 0 0 0 chr11 112994139 112994164 -8849692 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1447 493 284 19 63 chr11 112995292 112995450 -8848406 + B4 SINE B4 3 153 -139 9 1447 767 207 0 3 chr11 112995478 112995870 -8847986 + (CA)n Simple_repeat Simple_repeat 1 390 0 9 1447 257 231 123 6 chr11 112996118 112996214 -8847642 - MIR SINE MIR -92 176 67 1 1447 261 298 139 9 chr11 112996398 112996513 -8847343 - L2b LINE L2 -5 3370 3241 1 1447 433 318 66 6 chr11 112996916 112997186 -8846670 - MER44A DNA MER2_type -38 301 9 1 1447 1629 11 0 0 chr11 112997427 112997613 -8846243 + MT2_Mm LTR ERVL 308 493 0 1 1447 1758 19 0 5 chr11 112997615 112997822 -8846034 + ORR1A0 LTR MaLR 141 346 0 1 1447 622 322 46 11 chr11 112998022 112998304 -8845552 + B4A SINE B4 1 292 0 1 1447 266 284 0 0 chr11 112998649 112998716 -8845140 - MER121 Unknown Unknown -195 217 151 1 1447 448 294 85 99 chr11 112999775 112999998 -8843858 - MIRb SINE MIR -23 245 26 1 1447 313 285 50 28 chr11 113000258 113000399 -8843457 - L1MD3 LINE L1 -10 7985 7842 1 1447 725 186 134 21 chr11 113000405 113000592 -8843264 + B3 SINE B2 1 208 -8 2 1447 807 203 0 0 chr11 113000839 113001133 -8842723 + CT-rich Low_complexity Low_complexity 1 294 0 3 1447 216 200 0 22 chr11 113001980 113002026 -8841830 + GA-rich Low_complexity Low_complexity 1 45 0 4 1447 500 241 0 27 chr11 113002608 113002719 -8841137 + PB1D10 SINE Alu 2 109 -8 5 1447 582 103 0 0 chr11 113002827 113002914 -8840942 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1447 1237 41 7 0 chr11 113002938 113003084 -8840772 - B1_Mus2 SINE Alu 0 147 1 7 1447 343 243 19 28 chr11 113003092 113003198 -8840658 + L1MA9 LINE L1 6132 6236 -76 8 1447 201 162 0 0 chr11 113005543 113005580 -8838276 + A-rich Low_complexity Low_complexity 3 39 0 9 1447 387 328 11 60 chr11 113005908 113006090 -8837766 + ID_B1 SINE B4 52 224 0 1 1447 477 196 19 32 chr11 113006185 113006343 -8837513 + GA-rich Low_complexity Low_complexity 4 159 0 1 1447 309 256 12 12 chr11 113008565 113008648 -8835208 + L1MA10 LINE L1 6239 6321 -13 1 1447 391 305 0 8 chr11 113008636 113008765 -8835091 + L1MB4 LINE L1 6053 6180 0 1 1447 216 0 0 0 chr11 113009253 113009277 -8834579 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 1 1447 325 276 7 141 chr11 113009661 113009796 -8834060 + PB1D10 SINE Alu 1 117 0 1 1447 405 0 0 0 chr11 113011314 113011359 -8832497 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1447 748 242 77 0 chr11 113011535 113011717 -8832139 + B3A SINE B2 3 198 0 1 1447 338 311 9 0 chr11 113012455 113012561 -8831295 - L1M2 LINE L1 -1817 4326 4220 1 1447 1743 46 5 0 chr11 113012609 113012825 -8831031 + L1Md_F2 LINE L1 6354 6570 -12 1 1447 531 309 65 48 chr11 113013328 113013692 -8830164 + L1MB3 LINE L1 5792 6178 -5 2 1447 960 257 21 149 chr11 113013723 113014052 -8829804 - B4 SINE B4 0 292 6 2 1447 306 0 0 0 chr11 113014154 113014188 -8829668 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1447 323 278 120 0 chr11 113015275 113015408 -8828448 + B1F SINE Alu 1 149 0 2 1447 215 295 33 0 chr11 113015431 113015492 -8828364 + ID4_ SINE ID 20 82 -1 2 1447 229 328 0 0 chr11 113015492 113015559 -8828297 + GA-rich Low_complexity Low_complexity 3 69 0 2 1447 428 167 22 0 chr11 113015564 113015654 -8828202 + G-rich Low_complexity Low_complexity 2 93 0 2 1447 762 192 0 0 chr11 113015938 113016418 -8827438 + (TG)n Simple_repeat Simple_repeat 1 480 0 2 1447 1018 231 78 15 chr11 113016418 113016686 -8827170 - B4A SINE B4 0 292 8 2 1447 301 299 75 53 chr11 113017795 113017982 -8825874 - MIR SINE MIR -2 260 70 2 1447 282 278 144 132 chr11 113018182 113018356 -8825500 + MTEb LTR MaLR 204 379 0 3 1447 333 0 0 0 chr11 113018661 113018698 -8825158 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1447 195 204 0 0 chr11 113019000 113019049 -8824807 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1447 454 235 0 73 chr11 113019303 113019427 -8824429 + PB1D10 SINE Alu 2 116 -1 3 1447 206 174 0 21 chr11 113019429 113019476 -8824380 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 1447 680 229 72 0 chr11 113019477 113019630 -8824226 + B3 SINE B2 39 202 -14 3 1447 189 0 0 0 chr11 113021206 113021227 -8822629 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1447 729 345 76 15 chr11 113022738 113023068 -8820788 + Tigger7 DNA MER2_type 2134 2483 -8 3 1447 261 0 0 0 chr11 113024198 113024227 -8819629 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1447 255 31 0 0 chr11 113024262 113024294 -8819562 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1447 198 0 0 0 chr11 113024294 113024315 -8819541 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1447 194 0 0 37 chr11 113025470 113025497 -8818359 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 4 1447 419 176 0 11 chr11 113026141 113026233 -8817623 + CT-rich Low_complexity Low_complexity 1 91 0 4 1447 328 200 63 9 chr11 113027251 113027362 -8816494 - Tigger7 DNA MER2_type -86 2405 2289 4 1447 257 374 47 35 chr11 113027585 113027754 -8816102 - MIR SINE MIR -70 192 22 4 1447 323 45 0 22 chr11 113027754 113027800 -8816056 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 4 1447 976 234 38 45 chr11 113028245 113028391 -8815465 - B4A SINE B4 0 292 141 4 1447 437 0 0 19 chr11 113028391 113028445 -8815411 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1447 976 234 38 45 chr11 113028445 113028585 -8815271 - B4A SINE B4 -152 140 8 4 1447 260 295 20 50 chr11 113029917 113029981 -8813875 + MER68 LTR ERVL 403 490 -117 4 1447 1023 199 75 0 chr11 113029981 113030182 -8813674 - ID_B1 SINE B4 -7 217 2 4 1447 260 295 0 37 chr11 113030182 113030217 -8813639 + MER68 LTR ERVL 447 480 -83 4 1447 236 35 0 0 chr11 113030357 113030386 -8813470 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 5 1447 183 114 0 0 chr11 113030392 113030427 -8813429 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1447 301 141 28 0 chr11 113030426 113030497 -8813359 + CT-rich Low_complexity Low_complexity 2 74 0 5 1447 288 0 0 0 chr11 113030497 113030529 -8813327 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1447 259 299 72 16 chr11 113031629 113031770 -8812086 + MIR SINE MIR 15 166 -102 5 1447 210 250 0 0 chr11 113032463 113032507 -8811349 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1447 387 0 0 0 chr11 113032606 113032649 -8811207 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1447 210 37 0 0 chr11 113032685 113032712 -8811144 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1447 381 70 0 0 chr11 113032748 113032805 -8811051 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1447 224 140 0 23 chr11 113032843 113032887 -8810969 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1447 216 213 0 208 chr11 113032901 113032921 -8810935 + B1_Mur1 SINE Alu 66 80 -69 5 1447 264 30 0 0 chr11 113032921 113032954 -8810902 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1447 216 213 0 208 chr11 113032954 113032990 -8810866 + B1_Mur1 SINE Alu 81 109 -40 5 1447 255 93 0 0 chr11 113032990 113033033 -8810823 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1447 216 213 0 208 chr11 113033033 113033052 -8810804 + B1_Mur1 SINE Alu 110 126 -23 5 1447 446 129 0 12 chr11 113033071 113033157 -8810699 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1447 291 235 0 29 chr11 113033159 113033229 -8810627 + B1F SINE Alu 82 149 0 6 1447 378 0 0 0 chr11 113033447 113033489 -8810367 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1447 560 273 149 5 chr11 113033511 113033699 -8810157 - B3 SINE B2 -1 215 1 6 1447 2432 139 61 57 chr11 113034330 113034803 -8809053 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1447 1473 48 0 0 chr11 113034905 113035263 -8808593 + (CA)n Simple_repeat Simple_repeat 1 358 0 6 1447 227 327 89 24 chr11 113035368 113035537 -8808319 + L4 LINE RTE 688 867 -1162 6 1447 214 310 14 14 chr11 113036497 113036569 -8807287 - ID SINE ID -150 74 3 6 1447 230 340 35 61 chr11 113037413 113037429 -8806427 + YREP_Mm Unknown Unknown 167 208 -1604 6 1447 1027 31 0 0 chr11 113037429 113037557 -8806299 - B1_Mm SINE Alu -7 140 13 6 1447 230 340 35 61 chr11 113037557 113037610 -8806246 + YREP_Mm Unknown Unknown 209 358 -1454 6 1447 276 30 0 0 chr11 113038948 113038981 -8804875 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1447 288 0 0 0 chr11 113039615 113039647 -8804209 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1447 234 0 0 0 chr11 113040046 113040072 -8803784 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1447 561 227 159 39 chr11 113040699 113040956 -8802900 + B4A SINE B4 4 291 -1 7 1447 243 88 0 0 chr11 113040956 113040990 -8802866 + (CGGA)n Simple_repeat Simple_repeat 4 37 0 7 1447 938 283 137 15 chr11 113041354 113041691 -8802165 - MTEa LTR MaLR 0 379 2 7 1447 344 316 129 0 chr11 113042821 113042976 -8800880 + B4A SINE B4 3 177 -115 7 1447 768 10 30 0 chr11 113042982 113043083 -8800773 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1447 415 311 44 23 chr11 113043982 113044180 -8799676 + MIR SINE MIR 26 222 -46 7 1447 685 259 149 0 chr11 113044494 113044668 -8799188 + B3 SINE B2 1 200 -16 7 1447 424 0 0 35 chr11 113044668 113044726 -8799130 + (TAAAA)n Simple_repeat Simple_repeat 5 60 0 8 1447 380 289 48 0 chr11 113044734 113044838 -8799018 + B1F SINE Alu 8 116 -33 8 1447 405 0 0 0 chr11 113045008 113045053 -8798803 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1447 853 127 26 44 chr11 113046633 113046891 -8796965 - RMER19B LTR ERVK 0 902 727 8 1447 600 14 0 0 chr11 113046962 113047031 -8796825 + (TCC)n Simple_repeat Simple_repeat 2 70 0 8 1447 405 177 0 0 chr11 113048100 113048179 -8795677 + (CATA)n Simple_repeat Simple_repeat 3 81 0 8 1447 474 131 0 0 chr11 113048717 113048816 -8795040 + (TC)n Simple_repeat Simple_repeat 2 100 0 8 1447 324 0 0 0 chr11 113048816 113048852 -8795004 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1447 315 0 0 0 chr11 113049369 113049404 -8794452 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1447 402 21 0 0 chr11 113050782 113050829 -8793027 + (TGG)n Simple_repeat Simple_repeat 3 49 0 8 1447 445 280 129 55 chr11 113051414 113051686 -8792170 + B4 SINE B4 1 292 0 9 1447 224 111 0 22 chr11 113051715 113051761 -8792095 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1447 376 299 9 0 chr11 113051797 113051904 -8791952 + (CA)n Simple_repeat Simple_repeat 1 108 0 9 1447 215 115 39 0 chr11 113052566 113052618 -8791238 + T-rich Low_complexity Low_complexity 1 54 0 9 1447 1029 45 0 0 chr11 113052620 113052752 -8791104 - B1_Mm SINE Alu 0 147 16 9 1447 433 217 50 85 chr11 113052626 113052767 -8791089 - B4A SINE B4 -71 221 86 9 1447 305 267 119 0 chr11 113053166 113053267 -8790589 + MIRc SINE MIR 67 179 -89 9 1447 2830 58 5 21 chr11 113054855 113055243 -8788613 - MTB LTR MaLR 0 400 19 9 1447 495 87 0 0 chr11 113056813 113056882 -8786974 + (GGGA)n Simple_repeat Simple_repeat 3 71 0 9 1447 444 320 21 47 chr11 113056925 113057115 -8786741 + L1MB3 LINE L1 5546 5730 -453 9 1447 256 320 90 5 chr11 113057222 113057445 -8786411 + L1MB3 LINE L1 5941 6182 -1 9 1447 309 212 0 15 chr11 113058463 113058530 -8785326 + PB1D10 SINE Alu 42 107 -10 9 1447 270 0 0 0 chr11 113058804 113058834 -8785022 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1447 367 172 0 0 chr11 113059411 113059469 -8784387 + PB1D7 SINE Alu 45 102 -18 1 1447 204 40 0 0 chr11 113059477 113059502 -8784354 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1447 280 255 81 10 chr11 113060574 113060673 -8783183 + L1MD3 LINE L1 7859 7964 -31 1 1447 226 268 92 10 chr11 113060891 113060989 -8782867 + LTR44 LTR ERV1 303 408 -111 1 1447 189 0 0 0 chr11 113061703 113061724 -8782132 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1447 337 102 50 4 chr11 113063404 113063477 -8780379 - MTE2b LTR MaLR 0 379 301 1 1447 943 289 94 25 chr11 113063526 113063728 -8780128 + L1MA6 LINE L1 5082 5338 -802 1 1447 414 0 0 0 chr11 113063728 113063774 -8780082 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1447 1109 295 101 31 chr11 113063774 113064082 -8779774 + L1MA6 LINE L1 5294 5687 -613 1 1447 1158 48 0 0 chr11 113064082 113064227 -8779629 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 1447 1109 297 42 32 chr11 113064227 113064473 -8779383 + L1MA6 LINE L1 5688 5935 -365 1 1447 219 25 49 24 chr11 113064708 113064749 -8779107 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1447 1239 253 47 24 chr11 113064773 113065069 -8778787 - MTE2a LTR MaLR -46 333 31 1 1447 1329 160 0 34 chr11 113065178 113065411 -8778445 + URR1A DNA MER1_type 2 226 0 1 1447 1172 224 42 126 chr11 113065493 113065897 -8777959 - ORR1D2 LTR MaLR 0 370 1 1 1447 606 289 50 42 chr11 113066460 113066817 -8777039 + L1MC3 LINE L1 6546 6905 -880 1 1447 451 294 41 14 chr11 113066819 113066964 -8776892 + B1F SINE Alu 1 149 0 1 1447 228 262 180 0 chr11 113066970 113067031 -8776825 + ID4_ SINE ID 2 73 -10 1 1447 192 125 0 0 chr11 113067056 113067088 -8776768 + (GGA)n Simple_repeat Simple_repeat 1 32 0 1 1447 392 324 21 7 chr11 113067122 113067265 -8776591 + G-rich Low_complexity Low_complexity 3 147 0 1 1447 682 218 585 7 chr11 113069030 113069264 -8774592 - ORR1D2 LTR MaLR -1 369 1 1 1447 222 62 0 0 chr11 113069654 113069686 -8774170 + (G)n Simple_repeat Simple_repeat 1 32 0 1 1447 514 345 21 4 chr11 113071686 113071969 -8771887 + L1MA5 LINE L1 5665 5955 -201 1 1447 507 69 0 0 chr11 113071972 113072044 -8771812 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1 1447 1168 158 70 19 chr11 113072369 113072582 -8771274 + URR1B DNA MER1_type 1 224 -1 1 1447 3155 75 2 8 chr11 113072996 113073398 -8770458 - MTB LTR MaLR 0 400 1 1 1447 913 277 80 39 chr11 113073936 113074398 -8769458 + L1MB7 LINE L1 3435 3915 -2225 1 1447 315 65 0 0 chr11 113074428 113074474 -8769382 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1447 265 227 17 157 chr11 113074554 113074604 -8769252 + L1MB7 LINE L1 4087 4125 -2021 1 1447 1535 52 10 0 chr11 113074604 113074796 -8769060 - B2_Mm2 SINE B2 0 195 2 1 1447 265 227 17 157 chr11 113074796 113074860 -8768996 + L1MB7 LINE L1 4126 4185 -1961 1 1447 1282 256 150 34 chr11 113074877 113075034 -8768822 + L1MB7 LINE L1 5485 5672 -512 1 1447 234 0 0 0 chr11 113075034 113075060 -8768796 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1447 1282 256 150 34 chr11 113075060 113075497 -8768359 + L1MB7 LINE L1 5673 6147 -37 1 1447 185 284 33 43 chr11 113075680 113075718 -8768138 + L3 LINE CR1 2260 2295 -2194 1 1447 1054 275 60 63 chr11 113075718 113076098 -8767758 + MTE2a LTR MaLR 1 379 0 1 1447 185 284 33 43 chr11 113076098 113076151 -8767705 + L3 LINE CR1 2296 2350 -2139 1 1447 237 256 103 122 chr11 113076899 113077055 -8766801 - B4A SINE B4 -139 153 1 1 1447 252 149 0 0 chr11 113077177 113077224 -8766632 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 1447 180 0 0 0 chr11 113077334 113077354 -8766502 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1447 598 341 38 53 chr11 113077440 113077706 -8766150 + MER2 DNA MER2_type 6 267 -78 1 1447 700 253 58 32 chr11 113077743 113077931 -8765925 - B4A SINE B4 -99 193 1 1 1447 307 207 138 0 chr11 113078584 113078671 -8765185 - L1MEg LINE L1 -4149 1935 1837 1 1447 1021 281 117 6 chr11 113079064 113079390 -8764466 - MTEb LTR MaLR -17 362 1 1 1447 527 320 27 37 chr11 113079433 113079621 -8764235 + MLT1H1 LTR MaLR 12 197 -358 1 1447 355 416 42 14 chr11 113079709 113079921 -8763935 + MLT1H1 LTR MaLR 329 546 -9 1 1447 1024 160 0 10 chr11 113080882 113081183 -8762673 + (TG)n Simple_repeat Simple_repeat 1 298 0 1 1447 999 290 17 58 chr11 113081202 113081495 -8762361 - B4 SINE B4 -8 284 4 1 1447 450 108 0 0 chr11 113083482 113083565 -8760291 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 1 1447 359 169 84 0 chr11 113083565 113083636 -8760220 - ID_B1 SINE B4 -20 204 128 1 1447 486 252 142 7 chr11 113083696 113083844 -8760012 + MER20 DNA MER1_type 27 194 -25 1 1447 234 289 19 45 chr11 113084135 113084159 -8759697 + (TATATG)n Simple_repeat Simple_repeat 5 25 0 1 1447 309 51 0 0 chr11 113084159 113084198 -8759658 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1447 234 289 19 45 chr11 113084198 113084406 -8759450 + (TATATG)n Simple_repeat Simple_repeat 1 202 0 1 1447 269 272 27 55 chr11 113084457 113084640 -8759216 + (TATG)n Simple_repeat Simple_repeat 1 178 0 1 1447 306 277 161 32 chr11 113084719 113084915 -8758941 + MIR SINE MIR 16 243 -19 1 1447 562 267 130 25 chr11 113086019 113086219 -8757637 - ID_B1 SINE B4 -2 222 2 1 1447 614 300 109 16 chr11 113086799 113087046 -8756810 + B4A SINE B4 1 270 -22 1 1447 297 0 0 0 chr11 113087060 113087093 -8756763 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1447 501 17 0 0 chr11 113087093 113087150 -8756706 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1447 287 301 61 68 chr11 113087973 113088105 -8755751 + MIR3 SINE MIR 10 140 -68 1 1447 563 301 68 106 chr11 113088123 113088491 -8755365 + MLT1A LTR MaLR 19 372 -2 1 1447 698 275 101 24 chr11 113088707 113088994 -8754862 - Lx8 LINE L1 -218 7255 6947 1 1447 243 61 0 0 chr11 113089077 113089110 -8754746 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1447 719 259 121 10 chr11 113090077 113090276 -8753580 + ID_B1 SINE B4 3 223 -1 1 1447 526 284 123 72 chr11 113090502 113090737 -8753119 + B4A SINE B4 1 247 -45 1 1447 417 242 0 0 chr11 113090810 113090938 -8752918 + GA-rich Low_complexity Low_complexity 3 130 0 1 1447 1070 118 0 6 chr11 113090940 113091111 -8752745 + (GGA)n Simple_repeat Simple_repeat 2 171 0 1 1447 713 278 114 12 chr11 113091375 113091630 -8752226 + B4A SINE B4 9 289 -3 1 1447 342 0 0 0 chr11 113091659 113091697 -8752159 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1447 508 234 55 137 chr11 113091837 113092107 -8751749 - MLT1D LTR MaLR -317 307 8 1 1447 825 223 5 113 chr11 113092631 113092853 -8751003 + B3A SINE B2 1 198 0 1 1447 297 214 18 0 chr11 113092913 113092969 -8750887 - tRNA-Ala-GCY_ tRNA tRNA -9 66 10 1 1447 214 258 0 40 chr11 113094120 113094221 -8749635 + CT-rich Low_complexity Low_complexity 3 99 0 1 1447 832 260 39 5 chr11 113094227 113094432 -8749424 - ID_B1 SINE B4 -12 212 1 1 1447 25 65 0 0 chr11 113094901 113094947 -8748909 + AT_rich Low_complexity Low_complexity 1 46 0 1 1447 476 329 87 87 chr11 113095018 113095408 -8748448 - MLT1A1 LTR MaLR 0 408 19 1 1447 308 236 110 31 chr11 113096149 113096291 -8747565 + B4 SINE B4 1 165 0 1 1447 352 298 9 9 chr11 113096291 113096406 -8747450 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1447 275 219 2 0 chr11 113096406 113096464 -8747392 - B3 SINE B2 -136 59 1 1 1447 280 273 0 0 chr11 113097657 113097734 -8746122 + MTE2b LTR MaLR 9 85 -294 1 1447 280 161 18 18 chr11 113097707 113097764 -8746092 + MTEa LTR MaLR 322 378 -1 1 1447 1631 212 72 36 chr11 113098336 113098727 -8745129 + MTD LTR MaLR 1 405 -14 1 1447 387 0 0 0 chr11 113099084 113099127 -8744729 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1447 396 0 0 0 chr11 113099132 113099176 -8744680 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1447 270 0 0 0 chr11 113099685 113099715 -8744141 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1447 1876 146 96 75 chr11 113099735 113100121 -8743735 - ORR1B1 LTR MaLR 0 394 1 1 1447 492 331 42 46 chr11 113100159 113100419 -8743437 + MLT1E1A LTR MaLR 410 668 -12 1 1447 881 278 75 123 chr11 113101005 113101403 -8742453 - MTD LTR MaLR -14 405 27 1 1447 227 303 58 39 chr11 113101931 113102034 -8741822 + MLT2B5 LTR ERVL 245 349 -252 1 1447 414 248 20 78 chr11 113102733 113102886 -8740970 - MTEa LTR MaLR 0 379 236 1 1447 5899 160 55 18 chr11 113102895 113103768 -8740088 + Lx5 LINE L1 5945 6828 -222 1 1447 3140 71 10 0 chr11 113103768 113104164 -8739692 - MTB LTR MaLR 0 400 1 1 1447 5899 160 55 18 chr11 113104164 113104353 -8739503 + Lx5 LINE L1 6829 7046 -4 1 1447 353 266 24 37 chr11 113104477 113104623 -8739233 - MLT1A1 LTR MaLR 0 408 223 1 1447 1620 203 129 18 chr11 113104620 113105000 -8738856 - MTD LTR MaLR -14 405 1 1 1447 180 0 0 0 chr11 113105631 113105651 -8738205 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1447 368 234 330 18 chr11 113108078 113108187 -8735669 + B3A SINE B2 2 146 -52 1 1447 447 19 0 0 chr11 113108188 113108240 -8735616 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1447 758 254 147 32 chr11 113108276 113108528 -8735328 - B4 SINE B4 -10 282 2 1 1447 259 145 0 61 chr11 113108729 113108795 -8735061 + G-rich Low_complexity Low_complexity 6 67 0 1 1447 546 277 91 56 chr11 113109393 113109473 -8734383 - L1MB7 LINE L1 -1 6183 6096 1 1447 222 37 0 0 chr11 113109473 113109500 -8734356 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1447 546 277 91 56 chr11 113109500 113109759 -8734097 - L1MB7 LINE L1 -89 6095 5832 1 1447 331 125 14 14 chr11 113109783 113109856 -8734000 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1447 490 265 133 100 chr11 113109916 113109956 -8733900 - B4A SINE B4 -5 287 257 1 1447 210 91 0 0 chr11 113109956 113109989 -8733867 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1447 490 265 133 100 chr11 113109989 113110158 -8733698 - B4A SINE B4 -36 256 71 1 1447 940 225 125 25 chr11 113111895 113112222 -8731634 + MTD LTR MaLR 29 405 -14 1 1447 1379 194 114 10 chr11 113113754 113114062 -8729794 + ORR1D1 LTR MaLR 35 374 0 1 1447 229 211 0 37 chr11 113114972 113115026 -8728830 - MTEb LTR MaLR -13 366 315 2 1447 204 40 0 0 chr11 113115028 113115053 -8728803 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 2 1448 252 226 0 0 chr11 113115965 113116027 -8727829 + GA-rich Low_complexity Low_complexity 2 63 0 2 1448 649 281 21 42 chr11 113116943 113117136 -8726720 + ID_B1 SINE B4 1 189 -35 2 1448 1045 253 79 82 chr11 113117975 113118328 -8725528 + MTEa LTR MaLR 28 379 0 2 1448 262 254 16 0 chr11 113119690 113119753 -8724103 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1448 249 139 0 0 chr11 113119852 113119895 -8723961 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1448 376 246 45 57 chr11 113120048 113120261 -8723595 - B4 SINE B4 -15 277 78 2 1448 284 320 0 13 chr11 113120309 113120385 -8723471 - RSINE1 SINE B4 -80 85 11 2 1448 554 254 18 19 chr11 113120380 113120523 -8723333 - B4A SINE B4 -59 233 83 2 1448 349 210 60 24 chr11 113120574 113120657 -8723199 - B4 SINE B4 -205 87 2 2 1448 504 32 0 0 chr11 113121949 113122011 -8721845 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 2 1448 903 287 83 11 chr11 113122021 113122284 -8721572 + MLT1F LTR MaLR 178 459 -89 2 1448 542 332 62 79 chr11 113122284 113122653 -8721203 + MTE2a LTR MaLR 2 364 -15 2 1448 243 0 0 0 chr11 113123330 113123357 -8720499 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 1448 303 260 40 50 chr11 113124257 113124358 -8719498 + ORR1E LTR MaLR 6 105 -254 2 1448 306 261 115 115 chr11 113125043 113125107 -8718749 + B4 SINE B4 42 105 -187 2 1448 627 157 240 0 chr11 113125107 113125228 -8718628 + PB1D9 SINE Alu 1 150 0 2 1448 212 214 18 18 chr11 113125228 113125285 -8718571 + A-rich Low_complexity Low_complexity 3 59 0 2 1448 515 283 37 16 chr11 113126472 113126662 -8717194 + RLTR12B LTR ERVK 127 320 -208 2 1448 456 307 71 33 chr11 113126658 113126870 -8716986 + RLTR12B LTR ERVK 266 485 -43 2 1448 1128 167 77 0 chr11 113127168 113127414 -8716442 + RMER10B LTR ERVL 1 265 -133 2 1448 922 174 39 35 chr11 113127452 113127655 -8716201 + RMER10B LTR ERVL 195 398 0 2 1448 429 70 0 0 chr11 113127884 113127941 -8715915 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1448 252 0 0 0 chr11 113127941 113127968 -8715888 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1448 414 0 0 0 chr11 113128026 113128072 -8715784 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 2 1448 490 246 79 0 chr11 113128513 113128639 -8715217 - B4 SINE B4 -136 156 21 2 1448 1166 81 0 0 chr11 113128732 113128880 -8714976 - B1_Mus1 SINE Alu 0 148 1 2 1448 613 272 0 20 chr11 113128885 113129035 -8714821 - B1F SINE Alu -2 147 1 2 1448 310 298 45 86 chr11 113129045 113129243 -8714613 - L1MB3 LINE L1 -54 6120 5931 2 1448 419 315 78 8 chr11 113129284 113129505 -8714351 - L1MB3 LINE L1 -384 5858 5626 2 1448 240 163 0 0 chr11 113130863 113130906 -8712950 + T-rich Low_complexity Low_complexity 1 43 0 2 1448 187 345 33 66 chr11 113131542 113131663 -8712193 - L2b LINE L2 -223 3152 3036 2 1448 209 146 24 0 chr11 113131886 113131927 -8711929 + L3b LINE CR1 224 265 -217 2 1448 946 229 9 40 chr11 113132357 113132580 -8711276 + B3 SINE B2 1 216 0 2 1448 379 333 44 0 chr11 113133017 113133152 -8710704 - MIRb SINE MIR -87 181 41 2 1448 325 337 6 17 chr11 113133660 113133841 -8710015 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1448 234 349 72 63 chr11 113134446 113134669 -8709187 + Lx8 LINE L1 7048 7272 -201 2 1448 400 348 14 0 chr11 113135423 113135561 -8708295 + MER58B DNA MER1_type 169 308 -33 2 1448 698 280 41 109 chr11 113135606 113135846 -8708010 - B4 SINE B4 -10 282 56 2 1448 297 0 0 0 chr11 113135846 113135879 -8707977 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2 1448 698 280 41 109 chr11 113135879 113135931 -8707925 - B4 SINE B4 -237 55 10 2 1448 892 143 206 0 chr11 113135965 113136140 -8707716 - B3 SINE B2 -4 212 2 2 1448 645 184 123 19 chr11 113136179 113136294 -8707562 - ORR1D2 LTR MaLR 0 370 240 2 1448 186 43 0 0 chr11 113136294 113136317 -8707539 + (TGG)n Simple_repeat Simple_repeat 2 24 0 2 1448 645 184 123 19 chr11 113136317 113136356 -8707500 - ORR1D2 LTR MaLR -131 239 201 2 1448 1028 221 10 0 chr11 113136374 113136573 -8707283 - B3 SINE B2 -1 215 15 2 1448 245 350 36 54 chr11 113136715 113136881 -8706975 + MLT1D LTR MaLR 74 236 -269 2 1448 405 136 0 0 chr11 113137248 113137314 -8706542 + (GGA)n Simple_repeat Simple_repeat 2 67 0 2 1448 209 360 71 8 chr11 113137859 113137985 -8705871 - MIRb SINE MIR -10 258 125 2 1448 21 0 0 0 chr11 113139206 113139227 -8704629 + AT_rich Low_complexity Low_complexity 1 21 0 2 1448 225 288 0 17 chr11 113139341 113139401 -8704455 + PB1D9 SINE Alu 2 60 -60 2 1448 186 71 0 0 chr11 113139410 113139438 -8704418 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1448 422 283 141 22 chr11 113140998 113141182 -8702674 + RMER15 LTR ERVL 350 555 -20 2 1448 483 63 0 0 chr11 113141759 113141822 -8702034 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1448 687 302 74 48 chr11 113141827 113142098 -8701758 - B4 SINE B4 -12 280 3 2 1448 402 346 95 9 chr11 113142371 113142581 -8701275 - MIR SINE MIR -34 228 1 2 1448 400 357 69 20 chr11 113143046 113143249 -8700607 + MLT1K LTR MaLR 322 534 -61 2 1448 768 248 89 41 chr11 113143532 113143547 -8700309 - B4A SINE B4 -8 284 269 2 1448 312 102 0 0 chr11 113143547 113143596 -8700260 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1448 768 248 89 41 chr11 113143596 113143849 -8700007 - B4A SINE B4 -24 268 3 2 1448 429 257 91 101 chr11 113144164 113144363 -8699493 + B3A SINE B2 2 198 0 2 1448 186 43 0 0 chr11 113144510 113144533 -8699323 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1448 438 20 0 0 chr11 113144533 113144583 -8699273 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1448 564 280 108 15 chr11 113145318 113145521 -8698335 + ID_B1 SINE B4 1 222 -2 2 1448 583 255 19 39 chr11 113145579 113145734 -8698122 + RSINE1 SINE B4 11 162 -3 2 1448 1009 227 0 77 chr11 113145809 113146029 -8697827 - B3 SINE B2 -12 204 2 2 1448 226 241 35 0 chr11 113146030 113146088 -8697768 + MER5B DNA MER1_type 115 174 -4 2 1448 219 103 0 0 chr11 113146169 113146208 -8697648 + (G)n Simple_repeat Simple_repeat 1 39 0 2 1448 348 24 0 0 chr11 113146755 113146796 -8697060 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 2 1448 380 226 32 21 chr11 113146976 113147071 -8696785 + MLT2B4 LTR ERVL 1 96 -460 2 1448 21 0 0 0 chr11 113147071 113147092 -8696764 + AT_rich Low_complexity Low_complexity 1 21 0 2 1448 271 211 122 82 chr11 113147125 113147223 -8696633 - PB1D10 SINE Alu -1 116 15 2 1448 350 200 64 43 chr11 113147156 113147250 -8696606 - ID_B1 SINE B4 -65 159 64 2 1448 398 319 43 66 chr11 113147292 113147584 -8696272 + MLT2B4 LTR ERVL 106 404 -10 2 1448 1910 173 78 39 chr11 113148217 113148651 -8695205 + Lx9 LINE L1 7014 7464 -180 2 1448 420 20 0 0 chr11 113148654 113148703 -8695153 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1448 236 211 60 82 chr11 113148704 113148838 -8695018 - RMER17D2 LTR ERVK -431 378 248 2 1448 819 284 23 9 chr11 113148977 113149197 -8694659 + ID_B1 SINE B4 2 224 0 2 1448 300 321 38 0 chr11 113149720 113149826 -8694030 + PB1D10 SINE Alu 1 110 -7 2 1448 424 312 16 23 chr11 113149847 113149975 -8693881 + B1F SINE Alu 1 127 -22 2 1448 262 217 16 24 chr11 113149994 113150117 -8693739 + (TG)n Simple_repeat Simple_repeat 1 122 0 2 1448 353 257 0 29 chr11 113150209 113150564 -8693292 + (TG)n Simple_repeat Simple_repeat 1 344 0 2 1448 295 231 93 28 chr11 113150608 113150715 -8693141 - B4 SINE B4 -152 140 27 2 1448 427 346 106 55 chr11 113151744 113152254 -8691602 + L1MB3 LINE L1 5645 6180 -3 2 1448 401 270 10 0 chr11 113152841 113152941 -8690915 - ID_B1 SINE B4 -121 103 3 2 1448 371 295 28 19 chr11 113152991 113153098 -8690758 + PB1D9 SINE Alu 6 113 -7 2 1448 1386 58 0 0 chr11 113154058 113154267 -8689589 + (TCC)n Simple_repeat Simple_repeat 1 209 0 2 1448 404 317 26 142 chr11 113154457 113154766 -8689090 - MLT1C LTR MaLR -71 396 124 2 1448 295 236 14 27 chr11 113155017 113155091 -8688765 + CT-rich Low_complexity Low_complexity 3 75 0 2 1448 222 333 0 0 chr11 113155465 113155525 -8688331 + MIR SINE MIR 12 71 -191 2 1448 2108 82 17 21 chr11 113156600 113156957 -8686899 + ORR1A2 LTR MaLR 8 346 0 2 1448 504 282 28 44 chr11 113156988 113157170 -8686686 + B2_Mm2 SINE B2 6 184 -11 2 1448 773 278 46 23 chr11 113158851 113159068 -8684788 - ID_B1 SINE B4 0 224 3 2 1448 404 308 22 37 chr11 113159084 113159219 -8684637 - B1F1 SINE Alu -8 141 9 2 1448 396 302 104 6 chr11 113159579 113159742 -8684114 - MER58A DNA MER1_type -17 207 29 2 1448 223 258 113 0 chr11 113159825 113159887 -8683969 + RSINE1 SINE B4 9 77 -88 2 1448 227 200 120 67 chr11 113159957 113160032 -8683824 - MER47B DNA MER2_type -165 253 175 2 1448 180 0 0 0 chr11 113160103 113160123 -8683733 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1448 441 0 0 0 chr11 113160123 113160171 -8683685 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1448 271 349 46 80 chr11 113161015 113161252 -8682604 + B4A SINE B4 1 229 -63 2 1448 3248 143 18 65 chr11 113161253 113161852 -8682004 + RMER15 LTR ERVL 2 572 -3 2 1448 776 236 107 82 chr11 113162434 113162715 -8681141 - B4A SINE B4 -4 288 1 2 1448 522 0 0 0 chr11 113163079 113163137 -8680719 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1448 594 307 0 41 chr11 113163139 113163309 -8680547 - B3A SINE B2 -35 163 1 2 1448 1013 140 6 0 chr11 113163884 113164062 -8679794 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 2 1448 195 100 0 0 chr11 113164063 113164093 -8679763 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 2 1448 310 74 18 18 chr11 113165057 113165112 -8678744 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1448 930 58 22 7 chr11 113165134 113165272 -8678584 + (TCCC)n Simple_repeat Simple_repeat 4 143 0 3 1448 359 230 9 0 chr11 113165740 113165853 -8678003 + (TG)n Simple_repeat Simple_repeat 1 114 0 3 1448 946 267 72 25 chr11 113165856 113166133 -8677723 - B4 SINE B4 0 292 3 3 1448 224 329 143 30 chr11 113166539 113166874 -8676982 - L2 LINE L2 -955 2464 2092 3 1448 236 119 0 23 chr11 113167333 113167376 -8676480 - MLT1L LTR MaLR 0 610 569 3 1448 274 271 0 0 chr11 113167455 113167530 -8676326 + MTEb LTR MaLR 13 87 -292 3 1448 1203 97 15 0 chr11 113167531 113167874 -8675982 + (TTC)n Simple_repeat Simple_repeat 1 348 0 3 1448 251 236 18 0 chr11 113167874 113167929 -8675927 + CT-rich Low_complexity Low_complexity 2 57 0 3 1448 396 0 0 0 chr11 113168873 113168917 -8674939 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 3 1448 230 281 0 0 chr11 113168922 113168986 -8674870 - BC1_Mm scRNA scRNA -83 69 6 3 1448 611 154 11 50 chr11 113169007 113169142 -8674714 + B3 SINE B2 1 133 -60 3 1448 234 81 0 0 chr11 113170188 113170225 -8673631 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1448 678 289 105 50 chr11 113170938 113171416 -8672440 + Lx8 LINE L1 6970 7473 0 3 1448 229 224 0 0 chr11 113171883 113171932 -8671924 - MLT1A1 LTR MaLR 0 365 317 3 1448 908 46 92 0 chr11 113171930 113172060 -8671796 + B1_Mus2 SINE Alu 6 147 0 3 1448 223 49 49 0 chr11 113172062 113172103 -8671753 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1448 331 333 9 0 chr11 113172108 113172219 -8671637 - MLT1A1 LTR MaLR -54 354 243 3 1448 257 218 17 52 chr11 113172659 113172717 -8671139 + B4 SINE B4 237 292 0 3 1448 312 91 0 0 chr11 113172722 113172766 -8671090 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1448 298 280 13 0 chr11 113173501 113173576 -8670280 + RMER15-int LTR ERVL 4350 4425 -574 3 1448 869 297 60 17 chr11 113174087 113174385 -8669471 + Lx8 LINE L1 6394 6704 -769 3 1448 733 240 85 99 chr11 113174683 113174965 -8668891 + B4 SINE B4 2 279 -13 3 1448 200 336 103 37 chr11 113175297 113175433 -8668423 + L3 LINE CR1 3423 3567 -922 3 1448 379 241 241 0 chr11 113175549 113175657 -8668199 + RSINE1 SINE B4 4 137 -28 3 1448 25 31 0 0 chr11 113175675 113175707 -8668149 + AT_rich Low_complexity Low_complexity 1 32 0 3 1448 213 211 0 0 chr11 113176011 113176068 -8667788 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1448 255 300 0 12 chr11 113176095 113176176 -8667680 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 3 1448 2815 69 35 2 chr11 113177758 113178152 -8665704 - MTB_Mm LTR MaLR 0 407 1 3 1448 489 226 52 9 chr11 113178245 113178375 -8665481 + MTEb LTR MaLR 11 144 -235 3 1448 196 143 0 60 chr11 113178415 113178482 -8665374 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 3 1448 477 236 135 29 chr11 113178502 113178672 -8665184 + MTEb LTR MaLR 190 377 -2 3 1448 264 279 29 0 chr11 113178856 113178924 -8664932 - ID4 SINE ID -9 74 5 3 1448 205 297 16 0 chr11 113179289 113179353 -8664503 - MIRm SINE MIR -1 275 211 3 1448 298 182 84 74 chr11 113179450 113179545 -8664311 + RLTR25B LTR ERVK 414 509 -519 3 1448 833 37 0 0 chr11 113179479 113179588 -8664268 + B1_Mm SINE Alu 39 147 0 3 1448 436 311 85 32 chr11 113180270 113180428 -8663428 - 7SLRNA srpRNA srpRNA -115 199 31 3 1448 2453 110 41 74 chr11 113180428 113180889 -8662967 + RLTR41 LTR ERV1 1 446 0 3 1448 436 311 85 32 chr11 113180889 113180919 -8662937 - 7SLRNA srpRNA srpRNA -284 30 1 3 1448 606 63 0 0 chr11 113181183 113181262 -8662594 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1448 670 200 92 8 chr11 113181278 113181580 -8662276 + RMER17C LTR ERVK 1 410 0 3 1448 272 190 34 17 chr11 113182323 113182382 -8661474 + B4A SINE B4 174 233 -59 3 1448 2568 47 3 6 chr11 113182382 113182707 -8661149 - ORR1A2 LTR MaLR 0 327 4 3 1448 297 228 0 0 chr11 113183369 113183448 -8660408 + CT-rich Low_complexity Low_complexity 3 81 0 3 1448 3295 134 32 47 chr11 113183528 113183830 -8660026 + RLTR17 LTR ERVK 1 299 -393 3 1448 354 98 0 0 chr11 113183830 113183881 -8659975 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 1448 1152 68 0 0 chr11 113183888 113184035 -8659821 - B1_Mus1 SINE Alu 0 148 2 3 1448 3295 134 32 47 chr11 113184035 113184344 -8659512 + RLTR17 LTR ERVK 300 611 -81 3 1448 383 83 17 0 chr11 113186791 113186851 -8657005 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1448 375 264 52 53 chr11 113186919 113187087 -8656769 + L1MEe LINE L1 3052 3200 -2946 3 1448 21 36 0 0 chr11 113187534 113187562 -8656294 + AT_rich Low_complexity Low_complexity 1 28 0 3 1448 242 273 0 0 chr11 113188409 113188464 -8655392 - B4 SINE B4 -23 269 215 3 1448 301 250 73 0 chr11 113188472 113188540 -8655316 - L1M2 LINE L1 -3326 2817 2745 3 1448 30 59 0 0 chr11 113188642 113188693 -8655163 + AT_rich Low_complexity Low_complexity 1 51 0 3 1448 434 310 35 57 chr11 113188880 113189109 -8654747 - B4 SINE B4 -68 224 1 3 1448 297 265 29 0 chr11 113189418 113189486 -8654370 - B4 SINE B4 -141 151 82 3 1448 7741 59 0 3 chr11 113189504 113190599 -8653257 - L1_Mus1 LINE L1 0 6567 5476 3 1448 262 238 16 16 chr11 113190599 113190663 -8653193 - B4 SINE B4 -190 102 39 3 1448 393 288 103 23 chr11 113190847 113191021 -8652835 + MLT1B LTR MaLR 203 390 0 3 1448 217 135 27 0 chr11 113191153 113191190 -8652666 + C-rich Low_complexity Low_complexity 2 39 0 3 1448 258 367 101 50 chr11 113191348 113191864 -8651992 - Tigger15a DNA TcMar -120 595 54 3 1448 810 273 24 50 chr11 113191974 113192001 -8651855 + B4 SINE B4 4 30 -262 3 1448 216 0 0 0 chr11 113192001 113192025 -8651831 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 3 1448 810 273 24 50 chr11 113192025 113192294 -8651562 + B4 SINE B4 31 291 -1 3 1448 393 22 0 0 chr11 113192307 113192353 -8651503 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1448 281 240 104 26 chr11 113192355 113192432 -8651424 + ORR1E LTR MaLR 2 84 -275 3 1448 274 225 42 0 chr11 113192565 113192636 -8651220 - B4A SINE B4 -209 83 10 3 1448 521 327 87 34 chr11 113192841 113193164 -8650692 + MLT1C LTR MaLR 46 385 -82 3 1448 285 209 0 0 chr11 113193318 113193385 -8650471 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1448 690 309 37 37 chr11 113193388 113193660 -8650196 - B4 SINE B4 -4 288 17 3 1448 642 283 128 54 chr11 113193859 113194210 -8649646 + RMER10A LTR ERVL 25 401 -41 3 1448 729 339 76 9 chr11 113195462 113195804 -8648052 + MLT1A0 LTR MaLR 1 365 0 3 1448 731 227 14 166 chr11 113196158 113196454 -8647402 + ORR1E LTR MaLR 1 251 -108 3 1448 370 307 175 62 chr11 113196753 113197010 -8646846 + B4 SINE B4 2 287 -5 3 1448 297 167 0 0 chr11 113197786 113197840 -8646016 + CT-rich Low_complexity Low_complexity 2 55 0 3 1448 300 186 0 0 chr11 113197903 113197962 -8645894 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 1448 851 288 28 31 chr11 113197962 113198252 -8645604 - B4A SINE B4 0 292 4 3 1448 427 237 102 0 chr11 113198253 113198371 -8645485 - B1F SINE Alu -18 131 2 3 1448 1018 254 26 134 chr11 113198681 113199100 -8644756 + MTD LTR MaLR 1 374 -45 3 1448 474 274 141 28 chr11 113199105 113199353 -8644503 - B4A SINE B4 -14 278 3 3 1448 522 173 49 28 chr11 113199392 113199506 -8644350 - PB1D7 SINE Alu 0 120 6 3 1448 198 143 0 0 chr11 113199598 113199633 -8644223 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 3 1448 370 209 0 133 chr11 113200635 113200740 -8643116 - PB1D10 SINE Alu -8 109 19 3 1448 405 0 0 0 chr11 113200742 113200787 -8643069 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 3 1448 666 288 65 0 chr11 113200802 113200972 -8642884 - MER44B DNA MER2_type -263 287 107 3 1448 507 33 0 0 chr11 113200973 113201034 -8642822 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1448 238 297 47 0 chr11 113201055 113201119 -8642737 - B4A SINE B4 -6 286 220 3 1448 753 256 69 9 chr11 113201326 113201543 -8642313 - B4A SINE B4 -59 233 4 3 1448 684 135 0 0 chr11 113201748 113201859 -8641997 + (GGA)n Simple_repeat Simple_repeat 2 112 0 3 1448 183 368 10 31 chr11 113202223 113202321 -8641535 - MIR SINE MIR -76 186 91 3 1448 594 14 0 0 chr11 113202815 113202887 -8640969 + ORR1A2 LTR MaLR 255 326 -1 3 1448 225 65 0 0 chr11 113202888 113202919 -8640937 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 1448 779 178 0 7 chr11 113202920 113203056 -8640800 - B1_Mus1 SINE Alu -13 135 1 3 1448 446 232 0 21 chr11 113203382 113203479 -8640377 - PB1D7 SINE Alu -8 112 18 3 1448 277 326 53 1 chr11 113204261 113204356 -8639500 + MTEb LTR MaLR 256 365 -14 3 1448 234 91 0 0 chr11 113204365 113204398 -8639458 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1448 373 348 7 7 chr11 113204700 113204842 -8639014 + (CA)n Simple_repeat Simple_repeat 1 142 0 3 1448 288 0 0 0 chr11 113204856 113204888 -8638968 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1448 392 259 50 130 chr11 113205130 113205330 -8638526 - MER3 DNA MER1_type -25 184 1 3 1448 395 295 65 32 chr11 113205889 113206043 -8637813 - MLT1A1 LTR MaLR -2 406 248 3 1448 225 0 0 0 chr11 113206604 113206629 -8637227 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1448 523 200 0 27 chr11 113207521 113207706 -8636150 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1448 630 216 0 0 chr11 113207724 113207900 -8635956 + (TG)n Simple_repeat Simple_repeat 1 176 0 3 1448 576 208 0 0 chr11 113207938 113208146 -8635710 + (TG)n Simple_repeat Simple_repeat 1 208 0 3 1448 342 0 0 0 chr11 113208804 113208842 -8635014 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1448 288 0 0 0 chr11 113208842 113208873 -8634983 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1448 260 277 89 63 chr11 113209247 113209405 -8634451 + Tigger5 DNA MER2_type 2174 2335 -71 3 1448 705 248 63 22 chr11 113209406 113209623 -8634233 + B4 SINE B4 1 223 -1 3 1448 599 220 115 33 chr11 113209627 113209810 -8634046 + B3A SINE B2 1 198 0 3 1448 237 297 0 26 chr11 113209840 113209916 -8633940 + MLT1B LTR MaLR 184 257 -133 3 1448 656 248 64 12 chr11 113209939 113210146 -8633710 + ORR1E LTR MaLR 56 296 -74 3 1448 400 191 63 11 chr11 113210342 113210437 -8633419 + ORR1E LTR MaLR 280 379 0 3 1448 243 291 161 22 chr11 113211666 113211803 -8632053 + L1M4 LINE L1 5403 5558 -616 4 1448 989 221 14 5 chr11 113211952 113212166 -8631690 + B3 SINE B2 1 216 0 4 1448 180 125 0 0 chr11 113212988 113213020 -8630836 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1448 237 65 0 0 chr11 113213102 113213133 -8630723 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 1448 21 0 0 0 chr11 113213973 113213994 -8629862 + GC_rich Low_complexity Low_complexity 1 21 0 4 1448 3221 38 5 0 chr11 113214805 113215203 -8628653 + MTB LTR MaLR 1 400 0 4 1448 818 227 11 31 chr11 113215277 113215468 -8628388 + MTEa LTR MaLR 183 369 -10 4 1448 1090 288 77 0 chr11 113215685 113216036 -8627820 + MTE2b LTR MaLR 2 379 0 4 1448 1445 224 90 3 chr11 113217479 113217823 -8626033 + MTEb LTR MaLR 1 374 -5 4 1448 228 295 16 0 chr11 113217958 113218019 -8625837 - tRNA-Ala-GCY_ tRNA tRNA -12 63 2 4 1448 712 200 0 21 chr11 113218181 113218324 -8625532 - B1_Mur2 SINE Alu -1 148 9 4 1448 512 247 12 55 chr11 113218324 113218344 -8625512 - ID_B1 SINE B4 0 224 69 4 1448 229 286 24 0 chr11 113218532 113218616 -8625240 + L1MC4 LINE L1 6647 6732 -1310 4 1448 697 231 82 0 chr11 113218662 113218857 -8624999 - B3 SINE B2 -5 211 1 4 1448 196 333 222 21 chr11 113219122 113219361 -8624495 - L4 LINE RTE -155 1874 1588 4 1448 464 236 0 6 chr11 113219490 113219669 -8624187 + GA-rich Low_complexity Low_complexity 3 180 0 4 1448 215 204 0 0 chr11 113219680 113219724 -8624132 + GA-rich Low_complexity Low_complexity 3 46 0 4 1448 471 331 99 0 chr11 113219847 113220028 -8623828 + ID_B1 SINE B4 2 200 -24 4 1448 689 238 54 0 chr11 113220078 113220225 -8623631 - B4A SINE B4 -4 288 134 4 1448 619 213 59 0 chr11 113220226 113220362 -8623494 + B1F SINE Alu 1 144 -5 4 1448 1899 121 21 50 chr11 113220621 113220960 -8622896 + ORR1A4 LTR MaLR 1 329 0 4 1448 257 82 0 76 chr11 113221415 113221481 -8622375 + GA-rich Low_complexity Low_complexity 2 62 0 4 1448 232 351 66 44 chr11 113221594 113221731 -8622125 - MIRb SINE MIR -110 158 19 4 1448 27 0 0 0 chr11 113221937 113221964 -8621892 + AT_rich Low_complexity Low_complexity 1 27 0 4 1448 2146 100 158 3 chr11 113222205 113222546 -8621310 + ORR1B1 LTR MaLR 1 394 0 4 1448 1722 187 3 39 chr11 113223062 113223446 -8620410 + Lx5 LINE L1 6586 6955 -95 4 1448 779 247 148 4 chr11 113223676 113223932 -8619924 - MTEb LTR MaLR -38 341 49 4 1448 264 151 38 0 chr11 113224440 113224493 -8619363 + ORR1D1 LTR MaLR 29 83 -291 4 1448 248 267 43 159 chr11 113224605 113224743 -8619113 + ORR1D1 LTR MaLR 258 379 0 4 1448 330 196 0 0 chr11 113224805 113224897 -8618959 + GA-rich Low_complexity Low_complexity 2 93 0 4 1448 405 301 68 71 chr11 113225316 113225496 -8618360 + MLT1D LTR MaLR 256 451 -54 4 1448 207 0 0 0 chr11 113225496 113225519 -8618337 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1448 405 299 76 62 chr11 113225519 113225574 -8618282 + MLT1D LTR MaLR 452 505 0 4 1448 328 246 179 26 chr11 113225598 113225671 -8618185 + MLT1A0 LTR MaLR 58 134 -231 4 1448 288 0 0 0 chr11 113225671 113225703 -8618153 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1448 328 246 179 26 chr11 113225703 113225746 -8618110 + MLT1A0 LTR MaLR 135 191 -174 4 1448 780 296 17 17 chr11 113226332 113226566 -8617290 + B4A SINE B4 39 272 -20 4 1448 291 273 78 55 chr11 113226933 113227061 -8616795 + MTEa LTR MaLR 247 377 -2 4 1448 800 261 18 22 chr11 113227626 113227849 -8616007 - ID_B1 SINE B4 -2 222 1 4 1448 940 242 60 88 chr11 113227925 113228256 -8615600 - MTE2b LTR MaLR 0 379 58 4 1448 224 331 117 31 chr11 113229653 113229781 -8614075 - MIRb SINE MIR -13 255 117 4 1448 969 318 30 41 chr11 113230169 113230286 -8613570 - B4 SINE B4 0 292 179 4 1448 1247 153 13 47 chr11 113230286 113230519 -8613337 + URR1B DNA MER1_type 1 225 0 4 1448 969 318 30 41 chr11 113230519 113230696 -8613160 - B4 SINE B4 -114 178 1 4 1448 189 239 0 21 chr11 113231378 113231425 -8612431 + MIR SINE MIR 23 68 -194 4 1448 211 115 37 37 chr11 113231629 113231683 -8612173 + G-rich Low_complexity Low_complexity 2 55 0 4 1448 252 0 0 0 chr11 113231960 113231988 -8611868 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 4 1448 262 298 0 0 chr11 113232075 113232132 -8611724 + B1F SINE Alu 4 60 -89 4 1448 1181 237 56 124 chr11 113232452 113232847 -8611009 - MTE2a LTR MaLR 0 379 12 4 1448 619 258 16 8 chr11 113233203 113233328 -8610528 + RSINE1 SINE B4 2 127 -38 4 1448 597 257 130 11 chr11 113233534 113233711 -8610145 + B3A SINE B2 1 198 0 4 1448 185 212 0 29 chr11 113233766 113233834 -8610022 + G-rich Low_complexity Low_complexity 5 70 0 4 1448 324 0 0 0 chr11 113233998 113234034 -8609822 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1448 2315 99 39 113 chr11 113234235 113234623 -8609233 + RLTR10D LTR ERVK 1 359 0 4 1448 248 269 31 41 chr11 113235358 113235455 -8608401 + B4A SINE B4 1 96 -196 4 1448 382 299 21 0 chr11 113235461 113235558 -8608298 + RSINE1 SINE B4 38 136 -29 4 1448 447 280 34 88 chr11 113235600 113235804 -8608052 + B4 SINE B4 98 290 -2 4 1448 970 222 25 10 chr11 113235805 113236005 -8607851 - B3 SINE B2 -12 204 2 4 1448 255 209 0 0 chr11 113236221 113236264 -8607592 + B4A SINE B4 168 210 -82 4 1448 1277 199 95 55 chr11 113236528 113236853 -8607003 - ORR1D1 LTR MaLR -34 340 3 4 1448 1786 159 69 44 chr11 113237134 113237495 -8606361 + Lx5 LINE L1 6681 7050 0 4 1448 550 286 10 15 chr11 113237707 113237865 -8605991 + B3A SINE B2 65 215 -1 4 1448 22 0 0 0 chr11 113238579 113238601 -8605255 + AT_rich Low_complexity Low_complexity 1 22 0 4 1448 394 247 119 12 chr11 113239564 113239724 -8604132 + MER53 DNA hAT 7 183 -10 4 1448 285 29 0 0 chr11 113239730 113239764 -8604092 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1448 461 317 14 72 chr11 113239783 113240004 -8603852 - B4A SINE B4 -18 274 67 4 1448 464 227 113 0 chr11 113240950 113241047 -8602809 + B4A SINE B4 4 111 -181 4 1448 319 204 2 72 chr11 113241057 113241164 -8602692 + MTD LTR MaLR 9 110 -297 4 1448 944 209 256 13 chr11 113241229 113241530 -8602326 - ORR1D1 LTR MaLR 0 374 1 4 1448 1257 175 65 0 chr11 113242899 113243128 -8600728 - MTC LTR MaLR -169 252 9 4 1448 212 59 0 29 chr11 113243530 113243565 -8600291 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1448 1249 41 7 0 chr11 113243573 113243720 -8600136 - B1_Mus1 SINE Alu 0 148 1 4 1448 286 265 0 0 chr11 113243784 113243867 -8599989 + (TGGG)n Simple_repeat Simple_repeat 2 84 0 4 1448 320 318 19 0 chr11 113243955 113244062 -8599794 - PB1 SINE Alu -18 109 1 4 1448 738 298 23 50 chr11 113244211 113244469 -8599387 + B4 SINE B4 19 269 -23 4 1448 599 211 0 11 chr11 113244995 113245177 -8598679 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1448 542 217 0 11 chr11 113245201 113245383 -8598473 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1448 588 218 0 0 chr11 113245412 113245591 -8598265 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1448 264 137 0 0 chr11 113245615 113245666 -8598190 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1448 279 0 0 0 chr11 113245666 113245697 -8598159 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 22 454 317 92 5 chr11 113246086 113246292 -8597564 - MER58A DNA MER1_type 0 224 1 4 1449 348 24 0 0 chr11 113247251 113247292 -8596564 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 1449 585 0 0 0 chr11 113248439 113248504 -8595352 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 4 1449 225 264 7 20 chr11 113248510 113248665 -8595191 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 4 1449 414 0 0 0 chr11 113248982 113249028 -8594828 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1449 676 292 169 32 chr11 113249149 113249397 -8594459 - B4A SINE B4 -10 282 1 4 1449 284 244 100 44 chr11 113250156 113250246 -8593610 + PB1D7 SINE Alu 1 95 -25 4 1449 218 329 13 0 chr11 113250492 113250509 -8593347 + B4 SINE B4 70 87 -205 4 1449 219 260 12 88 chr11 113250509 113250589 -8593267 + B1_Mus2 SINE Alu 2 75 -45 4 1449 383 241 25 0 chr11 113251494 113251573 -8592283 - ID4_ SINE ID 0 83 3 4 1449 260 200 54 18 chr11 113251682 113251738 -8592118 - MER5A DNA MER1_type -14 175 118 4 1449 768 279 62 33 chr11 113251922 113252196 -8591660 + B4A SINE B4 3 284 -8 4 1449 200 273 0 0 chr11 113252933 113252977 -8590879 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1449 396 0 0 0 chr11 113253600 113253644 -8590212 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1449 226 319 14 0 chr11 113253703 113253775 -8590081 + MER57E1 LTR ERV1 105 177 -195 4 1449 228 35 0 0 chr11 113253986 113254015 -8589841 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1449 271 267 107 19 chr11 113254407 113254510 -8589346 + LTR48 LTR ERV1 46 157 -630 4 1449 252 100 0 0 chr11 113254511 113254551 -8589305 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 4 1449 405 353 65 40 chr11 113255895 113256172 -8587684 + MER21B LTR ERV1 504 787 -76 4 1449 574 302 59 95 chr11 113258542 113258791 -8585065 - ORR1E LTR MaLR -34 325 79 4 1449 995 170 96 20 chr11 113258791 113258989 -8584867 + B3 SINE B2 1 213 -3 4 1449 574 302 59 95 chr11 113258989 113259076 -8584780 - ORR1E LTR MaLR -281 78 1 4 1449 919 246 30 82 chr11 113259995 113260300 -8583556 + B4 SINE B4 2 290 -2 4 1449 364 307 129 61 chr11 113260732 113260895 -8582961 - MER21B LTR ERV1 -13 850 677 4 1449 257 209 8 24 chr11 113260966 113261044 -8582812 + PB1 SINE Alu 10 83 -34 4 1449 491 194 121 61 chr11 113261531 113261684 -8582172 + B3 SINE B2 72 215 -1 4 1449 665 267 0 36 chr11 113261792 113261959 -8581897 - RSINE1 SINE B4 -4 161 1 4 1449 276 77 0 0 chr11 113261978 113262017 -8581839 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1449 423 283 0 0 chr11 113262184 113262297 -8581559 - L1MC3 LINE L1 -225 7560 7448 4 1449 596 288 35 17 chr11 113262329 113262502 -8581354 - B3A SINE B2 -18 180 5 4 1449 1008 208 20 10 chr11 113262548 113262752 -8581104 - B3 SINE B2 -9 207 2 5 1449 323 277 65 39 chr11 113262822 113262976 -8580880 - L1MC3 LINE L1 -388 7607 7450 5 1449 397 248 123 7 chr11 113263101 113263247 -8580609 - L1MC3 LINE L1 -730 7055 6893 5 1449 241 188 21 0 chr11 113263621 113263669 -8580187 - PB1D7 SINE Alu -60 60 12 5 1449 785 31 54 0 chr11 113264438 113264567 -8579289 + (TCTA)n Simple_repeat Simple_repeat 2 137 0 5 1449 252 271 233 12 chr11 113264957 113265079 -8578777 + PB1D7 SINE Alu 1 149 0 5 1449 607 305 83 70 chr11 113265968 113266667 -8577189 + L1MA4 LINE L1 4194 4901 -1242 5 1449 703 270 24 19 chr11 113266721 113266929 -8576927 - ORR1D2 LTR MaLR 0 370 162 5 1449 536 181 14 27 chr11 113266941 113267089 -8576767 + G-rich Low_complexity Low_complexity 6 151 0 5 1449 578 175 37 55 chr11 113267089 113267247 -8576609 - ORR1D2 LTR MaLR -193 181 1 5 1449 422 282 107 19 chr11 113267334 113267638 -8576218 + L1MA4 LINE L1 5096 5399 -744 5 1449 341 303 28 14 chr11 113267647 113267791 -8576065 + B1F1 SINE Alu 2 147 -2 5 1449 279 268 69 121 chr11 113267791 113267821 -8576035 + B4A SINE B4 87 251 -41 5 1449 805 325 27 25 chr11 113267847 113268023 -8575833 + L1MA4 LINE L1 5476 5656 -644 5 1449 186 43 0 0 chr11 113268023 113268046 -8575810 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1449 805 325 27 25 chr11 113268046 113268311 -8575545 + L1MA4 LINE L1 5657 5918 -382 5 1449 809 242 23 69 chr11 113268575 113268881 -8574975 + B4 SINE B4 1 292 0 5 1449 421 250 0 22 chr11 113268911 113269095 -8574761 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1449 195 100 0 0 chr11 113269141 113269171 -8574685 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1449 873 235 46 5 chr11 113269851 113270048 -8573808 - B3 SINE B2 -11 205 1 5 1449 363 309 21 0 chr11 113270402 113270496 -8573360 + B4A SINE B4 1 96 -196 5 1449 886 255 10 14 chr11 113270496 113270703 -8573153 + B3 SINE B2 1 206 -10 5 1449 408 312 92 55 chr11 113270797 113270960 -8572896 + B4 SINE B4 105 273 -19 5 1449 209 0 0 88 chr11 113271021 113271055 -8572801 + (CATAA)n Simple_repeat Simple_repeat 2 32 0 5 1449 296 299 100 33 chr11 113271171 113271500 -8572356 + L1ME1 LINE L1 4896 5246 -900 5 1449 312 212 30 0 chr11 113271578 113271644 -8572212 + tRNA-Ala-GCY_ tRNA tRNA 2 69 -6 5 1449 800 255 238 16 chr11 113271660 113271971 -8571885 - MTD LTR MaLR -39 380 1 5 1449 295 304 102 29 chr11 113271998 113272045 -8571811 + L1ME1 LINE L1 5262 5316 -863 5 1449 239 319 60 8 chr11 113272045 113272162 -8571694 + PB1 SINE Alu 2 124 -3 5 1449 301 292 60 40 chr11 113272162 113272358 -8571498 + L1ME1 LINE L1 5317 5523 -921 5 1449 344 312 45 6 chr11 113272537 113272714 -8571142 + L1ME1 LINE L1 5649 5832 -347 5 1449 760 187 69 17 chr11 113272858 113273032 -8570824 + B3A SINE B2 5 187 -11 5 1449 715 219 44 27 chr11 113273957 113274165 -8569691 + B3A SINE B2 3 216 0 5 1449 415 232 113 50 chr11 113274482 113274641 -8569215 - RMER5 LTR ERV1 -22 512 344 5 1449 755 290 116 75 chr11 113274706 113274798 -8569058 - B4 SINE B4 -5 287 199 5 1449 701 204 7 22 chr11 113274798 113274933 -8568923 + B1_Mur4 SINE Alu 5 137 -13 5 1449 258 32 0 0 chr11 113274936 113274967 -8568889 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1449 755 290 116 75 chr11 113274967 113274981 -8568875 - B4 SINE B4 -94 198 194 5 1449 180 0 0 0 chr11 113274981 113275001 -8568855 + (G)n Simple_repeat Simple_repeat 1 20 0 5 1449 755 290 116 75 chr11 113275001 113275157 -8568699 - B4 SINE B4 -99 193 9 5 1449 619 288 116 34 chr11 113275179 113275499 -8568357 - RMER5 LTR ERV1 -188 346 1 5 1449 542 336 105 68 chr11 113275631 113275954 -8567902 - MER2 DNA MER2_type -6 339 5 5 1449 1684 211 49 50 chr11 113275983 113276398 -8567458 + MTD LTR MaLR 7 402 -17 5 1449 306 87 0 0 chr11 113276740 113276786 -8567070 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 5 1449 608 179 1 87 chr11 113277478 113277631 -8566225 - B1_Mur1 SINE Alu -13 136 1 5 1449 184 376 10 0 chr11 113277859 113277960 -8565896 + L2a LINE L2 1225 1326 -2093 5 1449 318 343 22 48 chr11 113278330 113278701 -8565155 + L2a LINE L2 1843 2203 -1216 5 1449 200 324 0 43 chr11 113278838 113278954 -8564902 + L2a LINE L2 3053 3163 -263 5 1449 237 33 0 0 chr11 113278998 113279028 -8564828 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 5 1449 685 310 70 5 chr11 113279123 113279337 -8564519 + B4 SINE B4 2 229 -63 5 1449 785 263 56 0 chr11 113279341 113279539 -8564317 + B3 SINE B2 1 209 -7 5 1449 611 133 9 0 chr11 113279548 113279653 -8564203 + (TA)n Simple_repeat Simple_repeat 2 107 0 5 1449 841 294 39 18 chr11 113279670 113279954 -8563902 + B4A SINE B4 3 292 0 5 1449 249 180 0 0 chr11 113279971 113280021 -8563835 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1449 327 140 0 109 chr11 113280044 113280108 -8563748 + B4 SINE B4 214 270 -22 5 1449 618 109 0 0 chr11 113280108 113280200 -8563656 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1449 649 317 47 25 chr11 113282188 113282505 -8561351 - Kanga2_a DNA Tc2 -215 673 350 5 1449 495 0 0 0 chr11 113282842 113282897 -8560959 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1449 306 182 75 64 chr11 113283845 113283939 -8559917 + L1M4b LINE L1 2170 2264 -5070 5 1449 300 188 0 0 chr11 113284070 113284134 -8559722 + (CACG)n Simple_repeat Simple_repeat 1 64 0 5 1449 337 292 118 37 chr11 113284153 113284288 -8559568 + MLT1J2 LTR MaLR 21 166 -282 5 1449 446 341 14 23 chr11 113285224 113285440 -8558416 + ORR1E LTR MaLR 1 214 -145 5 1449 1232 239 34 7 chr11 113285782 113286077 -8557779 + MTEb LTR MaLR 11 313 -66 5 1449 234 0 0 0 chr11 113286115 113286141 -8557715 + (C)n Simple_repeat Simple_repeat 1 26 0 5 1449 598 275 92 12 chr11 113286151 113286324 -8557532 - Lx8 LINE L1 -862 6611 6425 5 1449 249 237 0 17 chr11 113286489 113286549 -8557307 + ZP3AR Satellite Satellite 24 82 -130 5 1449 738 50 0 10 chr11 113286509 113286610 -8557246 + BC1_Mm scRNA scRNA 1 100 -52 5 1449 441 304 42 42 chr11 113286872 113287064 -8556792 + B3A SINE B2 1 192 -6 5 1449 553 288 95 9 chr11 113287832 113287959 -8555897 + B4 SINE B4 8 148 -144 5 1449 207 0 0 0 chr11 113287959 113287982 -8555874 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 1449 553 288 95 9 chr11 113287982 113288064 -8555792 + B4 SINE B4 149 235 -57 5 1449 555 312 43 11 chr11 113288815 113289003 -8554853 + B4 SINE B4 26 219 -73 5 1449 804 236 35 0 chr11 113289011 113289185 -8554671 + B3A SINE B2 1 180 -18 5 1449 277 263 13 26 chr11 113289225 113289303 -8554553 + B4 SINE B4 216 292 0 5 1449 720 147 0 0 chr11 113289303 113289439 -8554417 + (GA)n Simple_repeat Simple_repeat 1 136 0 5 1449 324 0 0 0 chr11 113289483 113289519 -8554337 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1449 926 274 75 57 chr11 113290176 113290548 -8553308 - MTE2b LTR MaLR 0 379 1 5 1449 306 299 173 0 chr11 113291578 113291705 -8552151 + MLT1C LTR MaLR 8 156 -311 5 1449 260 362 16 49 chr11 113292324 113292446 -8551410 + PB1 SINE Alu 10 127 0 5 1449 1791 183 59 32 chr11 113293284 113293691 -8550165 + MTD LTR MaLR 1 418 -1 5 1449 502 300 52 68 chr11 113294020 113294270 -8549586 + MLT1D LTR MaLR 1 246 -259 5 1449 716 257 31 80 chr11 113297203 113297427 -8546429 + ID_B1 SINE B4 11 223 -1 5 1449 2387 75 0 0 chr11 113297990 113298311 -8545545 + ORR1A2 LTR MaLR 7 327 0 5 1449 190 231 75 30 chr11 113299367 113299434 -8544422 + L3b LINE CR1 325 394 -88 5 1449 243 323 55 94 chr11 113299517 113299698 -8544158 + MER74B LTR ERVL 57 230 -392 5 1449 2193 184 25 25 chr11 113299842 113300322 -8543534 - Lx3C LINE L1 -2 6974 6495 5 1449 445 276 24 49 chr11 113300326 113300490 -8543366 - B3A SINE B2 0 198 39 5 1449 435 38 0 0 chr11 113302011 113302064 -8541792 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1449 450 103 0 0 chr11 113302064 113302142 -8541714 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1449 1294 266 152 20 chr11 113302348 113302842 -8541014 + RMER15 LTR ERVL 1 559 -16 5 1449 707 277 60 36 chr11 113303676 113303957 -8539899 - B4A SINE B4 -2 290 3 5 1449 1208 102 11 0 chr11 113304410 113304587 -8539269 + B2_Mm1t SINE B2 1 179 -14 5 1449 320 123 0 55 chr11 113304620 113304688 -8539168 + B2_Mm2 SINE B2 47 109 -107 5 1449 198 0 0 0 chr11 113305450 113305472 -8538384 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1449 23 33 0 0 chr11 113305472 113305502 -8538354 + AT_rich Low_complexity Low_complexity 1 30 0 5 1449 222 280 0 0 chr11 113305506 113305556 -8538300 + GA-rich Low_complexity Low_complexity 1 50 0 5 1449 210 358 88 28 chr11 113306230 113306411 -8537445 + L2 LINE L2 2757 2948 -471 5 1449 2067 150 91 0 chr11 113306606 113306967 -8536889 - ORR1B1 LTR MaLR 0 394 1 5 1449 3597 174 84 23 chr11 113306967 113307789 -8536067 - ORR1B1-int LTR MaLR 0 1509 638 5 1449 1038 156 6 243 chr11 113307685 113308023 -8535833 - MT2B LTR ERVL -343 258 1 5 1449 338 191 73 99 chr11 113308023 113308083 -8535773 - ORR1B1-int LTR MaLR -1350 613 558 5 1449 693 151 3 302 chr11 113308064 113308378 -8535478 - ORR1B1-int LTR MaLR -1323 640 421 5 1449 2473 179 26 2 chr11 113308705 113309174 -8534682 - ORR1B1-int LTR MaLR -1470 493 14 5 1449 2225 123 98 0 chr11 113309175 113309533 -8534323 - ORR1B1 LTR MaLR -1 393 1 5 1449 843 272 0 44 chr11 113309569 113309796 -8534060 + ID_B1 SINE B4 6 222 -2 5 1449 1663 210 69 5 chr11 113310739 113311132 -8532724 + MTD LTR MaLR 1 418 -1 5 1449 1035 210 66 22 chr11 113311240 113311575 -8532281 - MTD LTR MaLR -2 417 1 5 1449 438 20 0 0 chr11 113311584 113311635 -8532221 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1449 1025 181 43 17 chr11 113311751 113311988 -8531868 - Lx5 LINE L1 -574 6886 6458 5 1449 315 0 0 0 chr11 113312240 113312275 -8531581 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1449 900 102 28 35 chr11 113312392 113312535 -8531321 - B1_Mur4 SINE Alu -7 143 2 5 1449 342 0 0 0 chr11 113315777 113315815 -8528041 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1449 270 0 0 0 chr11 113315815 113315844 -8528012 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1449 1200 72 54 0 chr11 113315924 113316091 -8527765 + B2_Mm2 SINE B2 2 177 -18 5 1449 480 18 0 0 chr11 113316095 113316152 -8527704 + (GAA)n Simple_repeat Simple_repeat 2 58 0 5 1449 225 0 0 0 chr11 113316152 113316177 -8527679 + (TAG)n Simple_repeat Simple_repeat 1 25 0 5 1449 180 374 30 0 chr11 113316389 113316488 -8527368 - MIR SINE MIR 0 262 161 5 1449 440 306 94 96 chr11 113316703 113317492 -8526364 + L1MC LINE L1 4086 4872 -1274 5 1449 653 251 42 16 chr11 113317663 113317823 -8526033 + B3A SINE B2 3 165 -33 5 1449 225 0 0 0 chr11 113317823 113317848 -8526008 + (CATA)n Simple_repeat Simple_repeat 4 28 0 5 1449 653 251 42 16 chr11 113317848 113317877 -8525979 + B3A SINE B2 166 197 -1 5 1449 1033 278 40 49 chr11 113317921 113318315 -8525541 - MTE2a LTR MaLR -14 405 18 5 1449 381 301 36 78 chr11 113318322 113318491 -8525365 + L1MD LINE L1 5040 5203 -943 5 1449 1200 40 0 0 chr11 113318491 113318639 -8525217 + B1_Mus1 SINE Alu 1 148 0 6 1449 279 0 0 0 chr11 113318641 113318672 -8525184 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1449 381 301 36 78 chr11 113318672 113318780 -8525076 + L1MD LINE L1 5204 5308 -838 5 1449 24 0 0 0 chr11 113318994 113319018 -8524838 + AT_rich Low_complexity Low_complexity 1 24 0 6 1449 728 204 0 0 chr11 113319019 113319151 -8524705 - B1_Mur1 SINE Alu -8 141 10 6 1449 335 318 37 0 chr11 113319055 113319162 -8524694 - B4A SINE B4 -98 194 84 6 1449 297 281 8 109 chr11 113319162 113319177 -8524679 - MT2B2 LTR ERVL -319 238 151 6 1449 360 0 0 0 chr11 113319712 113319752 -8524104 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1449 183 42 0 0 chr11 113320505 113320529 -8523327 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 6 1449 374 120 13 0 chr11 113320918 113320993 -8522863 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1449 461 62 0 15 chr11 113320990 113321056 -8522800 + (TCC)n Simple_repeat Simple_repeat 3 67 0 6 1449 269 333 15 58 chr11 113321251 113321388 -8522468 - RMER15 LTR ERVL -67 508 378 6 1449 1107 274 26 42 chr11 113321862 113322211 -8521645 + MTEa LTR MaLR 1 339 -40 6 1449 180 77 0 0 chr11 113322211 113322237 -8521619 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1449 1107 274 26 42 chr11 113322237 113322272 -8521584 + MTEa LTR MaLR 340 378 -1 6 1449 261 330 65 9 chr11 113322303 113322410 -8521446 + MLT1B LTR MaLR 61 173 -217 6 1449 691 193 51 77 chr11 113322535 113322731 -8521125 + RMER15 LTR ERVL 5 195 -380 6 1449 228 209 11 21 chr11 113323103 113323196 -8520660 + GA-rich Low_complexity Low_complexity 1 92 0 6 1449 917 264 13 69 chr11 113323877 113324182 -8519674 + B4 SINE B4 1 288 -4 6 1449 303 28 0 0 chr11 113324189 113324225 -8519631 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1449 180 0 0 0 chr11 113325237 113325257 -8518599 + (CAG)n Simple_repeat Simple_repeat 1 20 0 6 1449 791 309 64 58 chr11 113325747 113326108 -8517748 - MTEa LTR MaLR -16 363 1 6 1449 1962 321 105 117 chr11 113326112 113326918 -8516938 - MTEa-int LTR MaLR -4 1576 719 6 1449 1865 145 3 52 chr11 113326918 113327245 -8516611 + RLTR10E LTR ERVK 1 311 0 6 1449 1962 321 105 117 chr11 113327245 113327543 -8516313 - MTEa-int LTR MaLR -862 718 409 6 1449 228 35 0 0 chr11 113327543 113327572 -8516284 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1449 1962 321 105 117 chr11 113327572 113328061 -8515795 - MTEa-int LTR MaLR -1172 408 1 6 1449 270 316 77 49 chr11 113328061 113328244 -8515612 - MTEa LTR MaLR 0 379 192 6 1449 282 143 0 0 chr11 113328305 113328354 -8515502 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1449 229 279 116 0 chr11 113329210 113329296 -8514560 + MER20 DNA MER1_type 124 219 0 6 1449 981 275 14 7 chr11 113329607 113329893 -8513963 + B4A SINE B4 1 288 -4 6 1449 378 0 0 0 chr11 113330056 113330098 -8513758 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1449 259 239 261 0 chr11 113330311 113330403 -8513453 + RSINE1 SINE B4 3 118 -47 6 1449 384 104 0 0 chr11 113330443 113330510 -8513346 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 1449 841 255 35 0 chr11 113330584 113330784 -8513072 - B3 SINE B2 -1 215 9 6 1449 398 293 55 25 chr11 113332130 113332271 -8511585 + B4A SINE B4 3 138 -86 6 1449 234 0 0 0 chr11 113334898 113334924 -8508932 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1449 234 315 14 0 chr11 113335196 113335269 -8508587 - MLT1H2 LTR MaLR -315 174 101 6 1449 225 0 0 0 chr11 113335456 113335481 -8508375 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1449 2333 138 4 68 chr11 113337185 113337644 -8506212 + RLTR23 LTR ERV1 1 430 0 6 1449 288 0 0 0 chr11 113337805 113337837 -8506019 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1449 485 274 9 0 chr11 113337882 113337995 -8505861 + RSINE1 SINE B4 4 117 -48 6 1449 291 54 0 0 chr11 113338014 113338051 -8505805 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1449 419 322 59 80 chr11 113338074 113338361 -8505495 + MLT1B LTR MaLR 100 380 -10 6 1449 259 213 90 20 chr11 113338588 113338663 -8505193 - B1F1 SINE Alu 0 117 46 6 1449 270 0 0 0 chr11 113339117 113339147 -8504709 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1449 768 327 47 45 chr11 113339206 113339632 -8504224 - MLT1E1A LTR MaLR -14 666 240 6 1449 1153 293 73 10 chr11 113339950 113340346 -8503510 + Lx7 LINE L1 6888 7308 -388 6 1449 230 217 0 0 chr11 113340349 113340395 -8503461 + (CGTG)n Simple_repeat Simple_repeat 4 49 0 6 1449 767 211 0 7 chr11 113340454 113340602 -8503254 - B1_Mur2 SINE Alu -1 148 2 6 1449 1221 34 0 0 chr11 113340653 113340800 -8503056 + B1_Mus2 SINE Alu 1 147 0 6 1449 321 342 60 27 chr11 113340800 113340950 -8502906 + L1MCa LINE L1 2166 2320 -4188 6 1449 654 208 11 11 chr11 113341651 113341831 -8502025 + GA-rich Low_complexity Low_complexity 1 180 0 6 1449 1082 117 0 0 chr11 113342317 113342479 -8501377 + B2_Mm2 SINE B2 1 162 -33 6 1449 195 42 0 0 chr11 113342479 113342503 -8501353 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6 1449 1154 285 51 30 chr11 113343444 113343777 -8500079 - MTE2b LTR MaLR -3 376 37 6 1449 1187 41 0 0 chr11 113344282 113344429 -8499427 + B1_Mus2 SINE Alu 1 147 0 6 1449 244 167 30 0 chr11 113344429 113344486 -8499370 + A-rich Low_complexity Low_complexity 13 71 0 6 1449 1382 191 147 20 chr11 113344978 113345331 -8498525 + RMER10B LTR ERVL 1 398 0 6 1449 662 196 54 32 chr11 113345426 113345611 -8498245 + B3A SINE B2 5 193 -5 6 1449 291 28 0 0 chr11 113347389 113347425 -8496431 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1449 466 353 92 35 chr11 113347807 113348241 -8495615 + MLT1E3 LTR MaLR 222 680 0 6 1449 3218 23 21 0 chr11 113348324 113348712 -8495144 + MTA_Mm LTR MaLR 1 396 0 6 1449 365 237 0 0 chr11 113349768 113349844 -8494012 + MTEb LTR MaLR 33 108 -271 6 1449 229 200 0 0 chr11 113350517 113350572 -8493284 + A-rich Low_complexity Low_complexity 1 55 0 6 1449 1099 275 93 0 chr11 113350775 113351109 -8492747 + MTEa LTR MaLR 3 367 -12 6 1449 901 314 7 29 chr11 113351380 113351659 -8492197 - B4A SINE B4 -4 288 16 6 1449 252 269 39 0 chr11 113352040 113352118 -8491738 + ID4 SINE ID 2 82 -1 6 1449 592 259 82 64 chr11 113352824 113353043 -8490813 - ID_B1 SINE B4 -1 223 1 6 1449 893 253 48 59 chr11 113353808 113354098 -8489758 + B4A SINE B4 6 292 0 6 1449 1356 59 16 16 chr11 113354223 113354412 -8489444 + B2_Mm2 SINE B2 1 189 -6 6 1449 716 11 23 0 chr11 113354413 113354501 -8489355 + (GGAAA)n Simple_repeat Simple_repeat 4 93 0 6 1449 642 263 10 29 chr11 113355104 113355308 -8488548 - RMER30 DNA MER1_type -1 201 2 6 1449 655 223 191 40 chr11 113355996 113356248 -8487608 + B4A SINE B4 3 292 0 6 1449 1314 42 71 0 chr11 113356303 113356471 -8487385 + B2_Mm2 SINE B2 1 180 -15 6 1449 237 65 0 0 chr11 113356473 113356504 -8487352 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1449 1083 251 17 10 chr11 113357059 113357353 -8486503 - MER33 DNA MER1_type -10 314 19 6 1449 742 299 90 19 chr11 113357583 113357849 -8486007 + B4 SINE B4 8 292 0 6 1449 743 240 5 27 chr11 113358443 113358627 -8485229 + B3A SINE B2 1 180 -18 6 1449 769 238 31 31 chr11 113358707 113358902 -8484954 + B4 SINE B4 84 278 -14 6 1449 423 0 0 0 chr11 113358908 113358955 -8484901 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1449 280 323 15 8 chr11 113359110 113359241 -8484615 + MER5A DNA MER1_type 2 133 -56 6 1449 370 307 27 119 chr11 113360119 113360304 -8483552 + MLT1C LTR MaLR 300 467 0 6 1449 720 233 47 42 chr11 113360557 113360772 -8483084 - B4 SINE B4 -75 217 2 6 1449 540 178 59 0 chr11 113360775 113360876 -8482980 - PB1D7 SINE Alu -1 119 13 6 1449 185 303 65 43 chr11 113361044 113361137 -8482719 + MIR SINE MIR 111 205 -57 6 1449 656 195 12 49 chr11 113362803 113362965 -8480891 - RSINE1 SINE B4 -7 158 3 6 1449 323 350 56 36 chr11 113363581 113363830 -8480026 - L1M5 LINE L1 -450 5790 5537 6 1449 405 330 27 38 chr11 113364551 113364737 -8479119 + Lx8 LINE L1 6926 7109 -364 6 1449 495 250 22 7 chr11 113364766 113364903 -8478953 + Lx9 LINE L1 7333 7471 -173 6 1449 342 0 0 0 chr11 113364933 113364971 -8478885 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1449 30 27 0 0 chr11 113365123 113365160 -8478696 + AT_rich Low_complexity Low_complexity 1 37 0 6 1449 371 181 14 0 chr11 113365549 113365621 -8478235 + B1_Mur4 SINE Alu 1 73 -77 6 1449 265 296 40 10 chr11 113365621 113365643 -8478213 + B4 SINE B4 86 182 -110 6 1449 262 257 161 149 chr11 113366284 113366343 -8477513 - MTE2b LTR MaLR -3 376 334 6 1449 956 86 7 28 chr11 113366343 113366487 -8477369 + B1_Mus1 SINE Alu 5 145 -3 6 1449 191 36 0 35 chr11 113366487 113366516 -8477340 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1449 262 257 161 149 chr11 113366516 113366629 -8477227 - MTE2b LTR MaLR -46 333 202 6 1449 3047 177 41 189 chr11 113367152 113368109 -8475747 + RLTR40 LTR ERVK 3 817 0 6 1449 365 253 0 0 chr11 113368131 113368206 -8475650 - MTE2b LTR MaLR -254 125 51 6 1449 878 216 35 22 chr11 113368232 113368459 -8475397 - RMER17B LTR ERVK -395 563 334 6 1449 231 204 0 0 chr11 113368638 113368692 -8475164 + (CATA)n Simple_repeat Simple_repeat 2 55 0 6 1449 2839 40 0 0 chr11 113368723 113369069 -8474787 + ORR1A1 LTR MaLR 1 346 0 6 1449 616 238 378 7 chr11 113369556 113369839 -8474017 + MTD LTR MaLR 18 405 -14 6 1449 1128 116 130 10 chr11 113370023 113370223 -8473633 - URR1A DNA MER1_type -2 224 1 6 1449 432 287 51 108 chr11 113370653 113370848 -8473008 + B3A SINE B2 2 185 -10 6 1449 383 233 44 0 chr11 113370883 113370973 -8472883 + PB1D10 SINE Alu 23 116 -1 6 1449 200 269 0 29 chr11 113370973 113371042 -8472814 + G-rich Low_complexity Low_complexity 4 70 0 6 1449 995 200 113 0 chr11 113371051 113371246 -8472610 + URR1A DNA MER1_type 5 221 -5 7 1449 1146 121 0 4 chr11 113371330 113371570 -8472286 + (GGGA)n Simple_repeat Simple_repeat 1 239 0 7 1449 204 289 0 0 chr11 113371576 113371621 -8472235 + polypurine Low_complexity Low_complexity 5 49 0 7 1449 304 319 85 40 chr11 113371798 113371974 -8471882 + MER2 DNA MER2_type 88 271 -74 7 1449 849 233 92 8 chr11 113373339 113373577 -8470279 - MTEb LTR MaLR 0 379 122 7 1449 563 295 31 15 chr11 113373699 113373895 -8469961 - MTEa LTR MaLR -180 199 1 7 1449 277 291 49 56 chr11 113374134 113374276 -8469580 + MER5A DNA MER1_type 38 178 -11 7 1449 807 238 108 8 chr11 113374710 113374968 -8468888 + B4A SINE B4 2 285 -7 7 1449 341 184 37 0 chr11 113375540 113375649 -8468207 + (TG)n Simple_repeat Simple_repeat 2 114 0 7 1449 552 172 35 0 chr11 113375682 113375856 -8468000 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1449 540 166 30 6 chr11 113375884 113376048 -8467808 + (TG)n Simple_repeat Simple_repeat 1 168 0 7 1449 440 260 93 33 chr11 113376090 113376241 -8467615 - B4A SINE B4 -22 270 111 7 1449 573 276 46 118 chr11 113376209 113376439 -8467417 - B4A SINE B4 -86 206 1 7 1449 844 230 70 97 chr11 113376650 113376949 -8466907 + B4A SINE B4 2 292 0 7 1450 506 251 98 75 chr11 113377289 113377543 -8466313 + MLT1A LTR MaLR 13 272 -102 7 1450 297 0 0 0 chr11 113378046 113378079 -8465777 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1450 429 20 0 0 chr11 113379559 113379609 -8464247 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1450 3875 31 63 4 chr11 113379772 113380261 -8463595 + MURVY-LTR LTR ERV1 2 519 0 7 1450 491 225 122 15 chr11 113381099 113381230 -8462626 + B4A SINE B4 148 292 0 7 1450 288 0 0 0 chr11 113381245 113381277 -8462579 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1450 442 221 12 0 chr11 113383510 113383596 -8460260 + PB1D10 SINE Alu 4 90 -27 7 1450 876 111 0 19 chr11 113383597 113383753 -8460103 + (GGAA)n Simple_repeat Simple_repeat 3 155 0 7 1450 186 236 0 0 chr11 113383757 113383812 -8460044 + GA-rich Low_complexity Low_complexity 3 57 0 7 1450 270 190 103 0 chr11 113385256 113385314 -8458542 + RMER15 LTR ERVL 403 466 -109 7 1450 228 286 0 14 chr11 113385375 113385446 -8458410 + Lx8 LINE L1 7393 7462 -11 7 1450 240 111 0 0 chr11 113385772 113385808 -8458048 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1450 1164 48 0 0 chr11 113385808 113385953 -8457903 - B1_Mus2 SINE Alu 0 147 3 7 1450 205 312 47 40 chr11 113386016 113386166 -8457690 - L3 LINE CR1 -178 4311 4161 7 1450 902 252 53 19 chr11 113386356 113386619 -8457237 + B4A SINE B4 3 274 -18 7 1450 1322 211 88 30 chr11 113386644 113387040 -8456816 + MTD LTR MaLR 1 419 0 7 1450 1582 275 92 13 chr11 113388028 113388495 -8455361 + MT2A LTR ERVL 1 504 -29 7 1450 409 342 13 6 chr11 113388866 113389022 -8454834 + MLT1D LTR MaLR 28 184 -321 7 1450 2858 66 42 37 chr11 113389138 113389547 -8454309 + RLTR10A LTR ERVK 1 411 0 7 1450 210 281 71 92 chr11 113390128 113390269 -8453587 + L2b LINE L2 3238 3375 0 7 1450 291 358 21 28 chr11 113390568 113390709 -8453147 - MIR3 SINE MIR -26 182 43 7 1450 572 278 91 0 chr11 113390856 113391043 -8452813 + L1M2 LINE L1 5473 5676 -615 7 1450 437 220 136 29 chr11 113391446 113391533 -8452323 + ORR1E LTR MaLR 5 102 -257 7 1450 637 268 135 16 chr11 113391533 113391726 -8452130 + B3 SINE B2 1 216 0 7 1450 343 69 0 49 chr11 113391804 113391865 -8451991 + (CCCCCT)n Simple_repeat Simple_repeat 1 58 0 7 1450 207 0 0 0 chr11 113392070 113392093 -8451763 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1450 3044 94 73 107 chr11 113392093 113392643 -8451213 + RMER4B LTR ERVK 55 585 0 7 1450 339 311 120 120 chr11 113392808 113392910 -8450946 + B4A SINE B4 1 98 -194 7 1450 308 64 21 0 chr11 113392910 113392957 -8450899 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1450 339 311 120 120 chr11 113392957 113393113 -8450743 + B4A SINE B4 99 270 -22 7 1450 440 99 14 0 chr11 113393113 113393184 -8450672 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1450 339 311 120 120 chr11 113393184 113393216 -8450640 + B4A SINE B4 271 292 0 7 1450 649 147 264 63 chr11 113393837 113394011 -8449845 + URR1A DNA MER1_type 17 225 -1 7 1450 743 276 104 19 chr11 113394019 113394288 -8449568 + B4 SINE B4 1 292 0 7 1450 259 202 35 81 chr11 113394908 113394944 -8448912 + PB1D7 SINE Alu 38 119 -1 7 1450 289 160 0 0 chr11 113394944 113394994 -8448862 + ID_B1 SINE B4 175 224 0 7 1450 1856 154 188 17 chr11 113395014 113395371 -8448485 + MTC LTR MaLR 4 421 0 7 1450 408 279 2 1 chr11 113396132 113396257 -8447599 + L1ME3 LINE L1 5658 5783 -390 7 1450 392 171 0 13 chr11 113396400 113396477 -8447379 + Lx8 LINE L1 7398 7473 0 7 1450 509 305 29 19 chr11 113396504 113396711 -8447145 + ID_B1 SINE B4 1 209 -15 7 1450 2323 155 65 12 chr11 113396711 113397110 -8446746 + MTC LTR MaLR 2 421 0 7 1450 25 0 0 0 chr11 113397127 113397152 -8446704 + AT_rich Low_complexity Low_complexity 1 25 0 7 1450 1090 224 0 5 chr11 113397258 113397473 -8446383 + B3 SINE B2 1 214 -2 7 1450 327 312 40 66 chr11 113397487 113397638 -8446218 + L1ME3 LINE L1 5808 5954 -208 7 1450 186 191 0 0 chr11 113398316 113398358 -8445498 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1450 539 294 77 68 chr11 113398382 113398651 -8445205 - B4A SINE B4 -18 274 2 7 1450 1273 193 5 5 chr11 113398878 113399102 -8444754 - URR1A DNA MER1_type 0 226 3 7 1450 426 325 80 39 chr11 113399143 113399290 -8444566 - L1ME1 LINE L1 -124 6055 5902 7 1450 969 205 28 28 chr11 113399290 113399501 -8444355 - B3 SINE B2 -4 212 2 7 1450 426 325 80 39 chr11 113399501 113399715 -8444141 - L1ME1 LINE L1 -278 5901 5679 7 1450 435 19 0 0 chr11 113400341 113400393 -8443463 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1450 981 256 57 34 chr11 113400393 113400656 -8443200 - B4A SINE B4 -23 269 1 7 1450 459 0 0 0 chr11 113401206 113401257 -8442599 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1450 291 262 113 73 chr11 113401436 113401613 -8442243 + ORR1C2 LTR MaLR 5 188 -196 7 1450 250 306 97 65 chr11 113402428 113402582 -8441274 + MER87 LTR ERV1 343 501 -40 7 1450 684 208 202 0 chr11 113402639 113402817 -8441039 + B3 SINE B2 2 215 -1 7 1450 284 231 25 25 chr11 113402824 113402904 -8440952 + ORR1C2 LTR MaLR 300 379 0 7 1450 1514 177 93 16 chr11 113402921 113403231 -8440625 + ORR1D1 LTR MaLR 41 374 0 7 1450 599 247 9 21 chr11 113403373 113403553 -8440303 + ORR1D1 LTR MaLR 16 191 -168 7 1450 227 229 0 54 chr11 113404347 113404458 -8439398 + (CATA)n Simple_repeat Simple_repeat 2 106 0 7 1450 723 288 93 15 chr11 113404499 113404767 -8439089 + B4 SINE B4 1 289 -3 7 1450 354 213 29 21 chr11 113406131 113406228 -8437628 + B1_Mur3 SINE Alu 6 103 -46 7 1450 1020 126 0 0 chr11 113406531 113406705 -8437151 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 7 1450 350 300 61 54 chr11 113406775 113406923 -8436933 + B1F SINE Alu 1 149 0 7 1450 378 312 16 8 chr11 113406795 113406924 -8436932 + ID_B1 SINE B4 95 224 0 7 1450 544 264 111 0 chr11 113406927 113407001 -8436855 + ID_B1 SINE B4 2 91 -133 7 1450 283 322 148 11 chr11 113407001 113407089 -8436767 + PB1D7 SINE Alu 1 100 -20 7 1450 335 305 0 35 chr11 113408326 113408411 -8435445 + ID_B1 SINE B4 80 161 -63 7 1450 294 264 22 22 chr11 113408411 113408449 -8435407 + B4A SINE B4 59 144 -145 7 1450 295 188 0 0 chr11 113408449 113408497 -8435359 + B1F1 SINE Alu 12 59 -90 7 1450 1608 200 125 15 chr11 113408533 113408891 -8434965 + Lx9 LINE L1 7086 7487 -157 7 1450 519 92 0 0 chr11 113408891 113408978 -8434878 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 7 1450 1608 200 125 15 chr11 113408978 113409010 -8434846 + Lx9 LINE L1 7488 7519 -125 7 1450 1241 41 0 7 chr11 113409206 113409353 -8434503 + B1_Mus2 SINE Alu 2 147 0 7 1450 482 276 64 35 chr11 113409602 113409775 -8434081 - MTD LTR MaLR -14 405 228 7 1450 7864 55 1 0 chr11 113409775 113410997 -8432859 + L1_Mus1 LINE L1 5345 6567 0 7 1450 1006 234 5 0 chr11 113411034 113411235 -8432621 + B3 SINE B2 3 204 -12 7 1450 1446 56 0 22 chr11 113411239 113411422 -8432434 + B2_Mm2 SINE B2 1 179 -16 7 1450 226 229 157 0 chr11 113411432 113411502 -8432354 - MTD LTR MaLR -130 249 169 7 1450 661 261 86 12 chr11 113411501 113411699 -8432157 - MTE2a LTR MaLR -180 239 4 7 1450 419 296 126 95 chr11 113411719 113412149 -8431707 + MLT1H LTR MaLR 79 521 -28 7 1450 639 241 199 2 chr11 113412709 113412893 -8430963 + B4 SINE B4 2 224 -68 7 1450 1905 186 114 3 chr11 113413145 113413522 -8430334 + MTD LTR MaLR 1 419 0 7 1450 241 378 0 26 chr11 113413693 113413769 -8430087 + MLT1J1 LTR MaLR 64 137 -307 7 1450 365 0 22 0 chr11 113414597 113414642 -8429214 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1450 234 81 0 0 chr11 113414642 113414679 -8429177 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 7 1450 247 288 73 24 chr11 113414707 113414789 -8429067 - B4 SINE B4 -4 288 203 7 1450 715 262 16 16 chr11 113414822 113415004 -8428852 - B3A SINE B2 -16 182 1 7 1450 231 292 66 53 chr11 113415438 113415514 -8428342 - LTR58 LTR ERV1 -376 303 227 7 1450 545 181 191 0 chr11 113416220 113416325 -8427531 + RSINE1 SINE B4 3 127 -38 7 1450 1164 255 87 36 chr11 113416574 113416932 -8426924 - MTEa LTR MaLR -3 376 1 7 1450 626 249 66 71 chr11 113417005 113417187 -8426669 - B3A SINE B2 -16 182 2 7 1450 311 308 139 30 chr11 113417499 113417700 -8426156 - MER58A DNA MER1_type 0 224 2 7 1450 392 222 0 0 chr11 113417989 113418061 -8425795 - tRNA-Ala-GCY_ tRNA tRNA 0 75 4 7 1450 355 331 71 18 chr11 113419190 113419359 -8424497 - Charlie2b DNA MER1_type -2604 178 1 7 1450 517 318 0 15 chr11 113419596 113419730 -8424126 + RSINE1 SINE B4 34 165 0 8 1450 318 255 54 54 chr11 113420112 113420261 -8423595 + L1MC5 LINE L1 7713 7861 -100 8 1450 698 262 42 29 chr11 113420330 113420541 -8423315 + B3A SINE B2 1 214 -2 8 1450 286 276 142 35 chr11 113421703 113421872 -8421984 + L1ME3A LINE L1 5987 6173 0 8 1450 366 123 0 0 chr11 113421891 113421948 -8421908 + (TCC)n Simple_repeat Simple_repeat 3 59 0 8 1450 225 0 0 0 chr11 113424097 113424122 -8419734 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1450 363 283 111 0 chr11 113424924 113425023 -8418833 + RSINE1 SINE B4 39 148 -17 8 1450 255 254 28 0 chr11 113425089 113425160 -8418696 + RMER30 DNA MER1_type 99 171 -31 8 1450 24 32 0 0 chr11 113425202 113425233 -8418623 + AT_rich Low_complexity Low_complexity 1 31 0 8 1450 706 236 0 26 chr11 113425296 113425448 -8418408 + B1_Mur2 SINE Alu 2 149 0 8 1450 403 278 8 34 chr11 113425971 113426090 -8417766 - PB1D10 SINE Alu -1 116 1 8 1450 903 236 11 11 chr11 113426090 113426169 -8417687 - ID SINE ID -143 81 3 8 1450 523 313 22 27 chr11 113427635 113427819 -8416037 + MER53 DNA hAT 9 191 -2 8 1450 368 291 45 0 chr11 113428826 113428936 -8414920 + PB1D10 SINE Alu 2 116 -1 8 1450 321 293 57 70 chr11 113429069 113429227 -8414629 + L1MC5 LINE L1 7756 7911 -50 8 1450 216 0 0 0 chr11 113429252 113429276 -8414580 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 8 1450 182 91 30 0 chr11 113429277 113429310 -8414546 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1450 3065 6 30 0 chr11 113429511 113429847 -8414009 + ORR1A0 LTR MaLR 1 346 0 8 1450 1075 250 123 4 chr11 113430060 113430321 -8413535 - MTD LTR MaLR -85 334 43 8 1450 647 174 8 55 chr11 113430430 113430558 -8413298 + ORR1E LTR MaLR 39 160 -199 8 1450 1741 118 113 20 chr11 113430569 113430871 -8412985 + ORR1B1 LTR MaLR 3 332 -62 8 1450 266 333 255 3 chr11 113431662 113431960 -8411896 + L2b LINE L2 3003 3375 0 8 1450 287 354 102 0 chr11 113432150 113432277 -8411579 + MER20 DNA MER1_type 80 219 0 8 1450 609 248 0 0 chr11 113432358 113432483 -8411373 + RSINE1 SINE B4 3 127 -38 8 1450 315 0 0 0 chr11 113432510 113432545 -8411311 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1450 24 0 0 0 chr11 113432569 113432593 -8411263 + AT_rich Low_complexity Low_complexity 1 24 0 8 1450 1048 192 65 12 chr11 113432798 113432863 -8410993 - MTD LTR MaLR -15 404 308 8 1450 1249 122 16 5 chr11 113432863 113433052 -8410804 + B2_Mm2 SINE B2 5 195 0 8 1450 1048 249 121 81 chr11 113433052 113433243 -8410613 - MTD LTR MaLR -69 350 151 8 1450 2636 168 92 32 chr11 113433243 113433777 -8410079 + RMER2 LTR ERV1 1 566 -1 8 1450 1048 249 121 81 chr11 113433777 113433898 -8409958 - MTD LTR MaLR -269 150 18 8 1450 349 262 73 27 chr11 113435128 113435238 -8408618 - PB1D10 SINE Alu -2 115 1 8 1450 313 291 34 101 chr11 113435368 113435423 -8408433 + MLT1D LTR MaLR 17 62 -565 8 1450 1460 241 74 8 chr11 113435423 113435775 -8408081 - MTEb LTR MaLR -3 376 2 8 1450 623 297 98 53 chr11 113435775 113436069 -8407787 + MLT1D LTR MaLR 63 386 -119 8 1450 270 324 96 51 chr11 113436385 113436420 -8407436 + ID_B1 SINE B4 49 211 -13 8 1450 574 227 99 16 chr11 113436420 113436541 -8407315 + B1_Mur1 SINE Alu 6 136 -13 8 1450 361 333 76 49 chr11 113436608 113436832 -8407024 + B4A SINE B4 2 231 -61 8 1450 285 98 0 0 chr11 113436879 113436920 -8406936 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1450 234 0 0 0 chr11 113436981 113437007 -8406849 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 8 1450 297 307 48 29 chr11 113437016 113437120 -8406736 - MER45R DNA Tip100 -1438 143 38 8 1450 254 191 79 0 chr11 113437192 113437255 -8406601 + Lx9 LINE L1 7567 7634 -10 8 1450 213 39 0 0 chr11 113437256 113437282 -8406574 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1450 920 113 7 7 chr11 113437362 113437505 -8406351 - URR1B DNA MER1_type 0 225 83 8 1450 845 242 144 55 chr11 113437760 113438127 -8405729 + ORSL-2b DNA Tip100 43 442 -66 8 1450 228 67 0 0 chr11 113438147 113438177 -8405679 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1450 492 62 0 0 chr11 113438414 113438478 -8405378 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1450 1632 201 93 0 chr11 113438500 113438824 -8405032 - MTE2b LTR MaLR -4 375 22 8 1450 469 310 117 100 chr11 113438983 113439452 -8404404 + MLT1C LTR MaLR 27 503 -2 8 1450 1247 84 6 0 chr11 113439680 113439858 -8403998 + (GAA)n Simple_repeat Simple_repeat 2 180 0 8 1450 990 149 193 0 chr11 113439958 113440139 -8403717 - B3 SINE B2 0 216 1 8 1450 3281 39 36 13 chr11 113440195 113440586 -8403270 + MTB LTR MaLR 1 400 0 8 1450 936 235 14 23 chr11 113441343 113441561 -8402295 + B3 SINE B2 1 216 0 8 1450 1499 57 0 35 chr11 113441564 113441765 -8402091 - B2_Mm2 SINE B2 0 195 2 8 1450 405 262 82 57 chr11 113441785 113441979 -8401877 - Charlie19a DNA Charlie -62 324 126 8 1450 229 258 179 15 chr11 113442909 113442976 -8400880 + PB1D10 SINE Alu 23 100 -17 8 1450 423 38 0 0 chr11 113442985 113443038 -8400818 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 8 1450 4688 67 5 0 chr11 113443318 113443899 -8399957 - MT2B2 LTR ERVL 0 584 1 8 1450 464 260 68 124 chr11 113444255 113444505 -8399351 + B4A SINE B4 28 263 -29 8 1450 522 215 133 40 chr11 113444523 113444673 -8399183 + B4 SINE B4 128 291 -1 8 1450 1116 38 15 0 chr11 113446047 113446178 -8397678 + B1_Mm SINE Alu 5 137 -10 8 1450 221 0 0 33 chr11 113446178 113446208 -8397648 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1450 634 268 95 6 chr11 113446273 113446442 -8397414 + ID_B1 SINE B4 32 215 -9 8 1450 602 279 56 28 chr11 113446472 113446616 -8397240 - RSINE1 SINE B4 -17 148 1 8 1450 288 311 37 55 chr11 113446626 113446735 -8397121 - B1F SINE Alu -5 144 38 8 1450 275 294 71 59 chr11 113446973 113447143 -8396713 + RLTR21 LTR ERVK 1081 1252 -320 8 1450 742 333 64 29 chr11 113447151 113447432 -8396424 - B4A SINE B4 0 292 2 8 1450 301 259 102 54 chr11 113447432 113447578 -8396278 + Kanga1 DNA Tc2 1591 1743 -2 8 1450 1387 96 16 0 chr11 113448698 113448885 -8394971 + B2_Mm2 SINE B2 2 191 -4 8 1450 448 297 60 39 chr11 113449577 113449759 -8394097 + B4 SINE B4 39 224 -68 8 1450 609 302 0 12 chr11 113449763 113449924 -8393932 + RSINE1 SINE B4 3 161 -4 8 1450 920 170 7 0 chr11 113449938 113450079 -8393777 + B1_Mur1 SINE Alu 1 142 -7 8 1450 241 270 13 26 chr11 113450098 113450174 -8393682 + B4A SINE B4 212 286 -6 8 1450 412 198 12 12 chr11 113451102 113451184 -8392672 + ID_B1 SINE B4 122 203 -21 8 1450 4324 69 33 9 chr11 113451646 113452216 -8391640 - MT2B2 LTR ERVL 0 584 1 8 1450 860 283 115 8 chr11 113452242 113452634 -8391222 + L1MB5 LINE L1 5650 6083 -91 8 1450 983 245 0 9 chr11 113452676 113452886 -8390970 + B3 SINE B2 2 209 -7 8 1450 1222 55 7 0 chr11 113452899 113453045 -8390811 - B1_Mus1 SINE Alu -1 147 1 8 1450 1108 172 18 37 chr11 113453264 113453481 -8390375 - B3 SINE B2 0 216 4 8 1450 369 0 0 0 chr11 113453699 113453740 -8390116 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 8 1450 374 264 22 11 chr11 113453753 113453845 -8390011 - RSINE1 SINE B4 -19 146 54 8 1450 200 35 35 0 chr11 113453873 113453902 -8389954 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 8 1450 386 244 0 0 chr11 113453910 113453992 -8389864 + B4A SINE B4 3 84 -208 8 1450 363 167 0 29 chr11 113454131 113454199 -8389657 + HAL1-3A_ME LINE L1 1974 2039 -819 8 1450 873 263 99 0 chr11 113454785 113455047 -8388809 - B4A SINE B4 -3 289 2 8 1450 468 0 0 0 chr11 113455161 113455213 -8388643 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1450 950 105 238 22 chr11 113455240 113455370 -8388486 - URR1A DNA MER1_type 0 226 98 8 1450 360 0 0 0 chr11 113455370 113455410 -8388446 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 8 1450 950 105 238 22 chr11 113455410 113455464 -8388392 - URR1A DNA MER1_type -129 97 2 8 1450 22 0 0 0 chr11 113455644 113455666 -8388190 + AT_rich Low_complexity Low_complexity 1 22 0 8 1450 1330 82 5 30 chr11 113455919 113456119 -8387737 + B2_Mm2 SINE B2 1 195 0 8 1450 281 330 117 37 chr11 113456119 113456333 -8387523 + Lx8 LINE L1 7240 7470 -3 8 1450 250 349 18 35 chr11 113456445 113456558 -8387298 - MIR SINE MIR -150 112 2 8 1450 180 125 0 0 chr11 113456740 113456772 -8387084 + (TTAG)n Simple_repeat Simple_repeat 2 33 0 8 1450 593 210 102 24 chr11 113456772 113456890 -8386966 - B1_Mur1 SINE Alu -7 142 12 8 1450 438 309 188 40 chr11 113456929 113457276 -8386580 + MLT1J LTR MaLR 1 399 -113 8 1450 203 42 0 94 chr11 113457401 113457454 -8386402 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 8 1450 3446 40 2 0 chr11 113457965 113458360 -8385496 + MTA_Mm LTR MaLR 1 396 0 8 1450 1002 241 69 100 chr11 113458401 113458692 -8385164 + B4 SINE B4 5 286 -6 8 1450 430 178 0 0 chr11 113458931 113459004 -8384852 + ID SINE ID 3 75 -149 8 1450 301 320 20 49 chr11 113459364 113459466 -8384390 + PB1D10 SINE Alu 4 102 -15 8 1450 185 158 30 50 chr11 113459473 113459573 -8384283 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 8 1450 2255 114 25 0 chr11 113459600 113459917 -8383939 + ORR1A2 LTR MaLR 1 325 -2 8 1450 22 0 0 0 chr11 113460352 113460374 -8383482 + AT_rich Low_complexity Low_complexity 1 22 0 8 1450 704 235 6 44 chr11 113460374 113460534 -8383322 + RSINE1 SINE B4 1 154 -11 8 1450 840 296 70 49 chr11 113460653 113460833 -8383023 - MTD LTR MaLR -33 386 204 9 1450 687 252 0 7 chr11 113460833 113460981 -8382875 - B1_Mur1 SINE Alu -2 147 1 9 1450 840 296 70 49 chr11 113460981 113461145 -8382711 - MTD LTR MaLR -216 203 35 9 1450 1284 174 4 9 chr11 113461147 113461373 -8382483 + URR1B DNA MER1_type 1 225 0 9 1450 1006 194 40 108 chr11 113461419 113461697 -8382159 + B4 SINE B4 30 288 -4 9 1450 234 0 0 0 chr11 113461873 113461899 -8381957 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 9 1450 21 0 0 0 chr11 113463228 113463249 -8380607 + GC_rich Low_complexity Low_complexity 1 21 0 9 1450 348 24 0 0 chr11 113464009 113464050 -8379806 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1450 378 273 0 76 chr11 113464057 113464147 -8379709 - RSINE1 SINE B4 -1 164 84 9 1450 1461 116 88 1 chr11 113464147 113464413 -8379443 + ORR1A3 LTR MaLR 1 359 -8 9 1450 660 203 8 0 chr11 113464429 113464547 -8379309 + B3 SINE B2 22 140 -76 9 1450 320 311 64 36 chr11 113464708 113464818 -8379038 - MLT1B LTR MaLR -169 221 109 9 1450 485 251 115 127 chr11 113464822 113465020 -8378836 + MER89 LTR ERV1 3 287 -272 9 1450 3005 71 20 0 chr11 113465020 113465412 -8378444 + MTB LTR MaLR 1 400 0 9 1450 485 279 169 80 chr11 113465412 113465648 -8378208 + MER89 LTR ERV1 288 551 -8 9 1450 914 193 71 66 chr11 113466810 113466993 -8376863 + B3A SINE B2 4 187 -8 9 1450 976 178 5 45 chr11 113467078 113467278 -8376578 + B3A SINE B2 2 193 -5 9 1450 1650 174 84 26 chr11 113467308 113467655 -8376201 - ORR1D1 LTR MaLR -2 372 6 9 1450 2416 74 51 0 chr11 113467700 113468011 -8375845 + ORR1A2 LTR MaLR 1 327 0 9 1450 264 59 0 0 chr11 113468142 113468176 -8375680 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1450 957 259 8 179 chr11 113468617 113468786 -8375070 + MTEa LTR MaLR 21 171 -208 9 1450 1191 75 0 0 chr11 113468786 113468933 -8374923 + B1_Mus2 SINE Alu 1 147 0 9 1450 957 259 8 179 chr11 113468933 113469120 -8374736 + MTEa LTR MaLR 172 316 -63 9 1450 771 73 186 0 chr11 113469125 113469249 -8374607 + B1_Mus1 SINE Alu 1 147 -1 9 1450 600 125 129 44 chr11 113469409 113469548 -8374308 + B2_Mm2 SINE B2 42 187 -8 9 1450 615 234 24 72 chr11 113469692 113469858 -8373998 + B3 SINE B2 57 214 -2 9 1450 493 188 30 26 chr11 113469915 113470032 -8373824 + B1F2 SINE Alu 10 144 -5 9 1450 492 278 9 93 chr11 113469956 113470117 -8373739 + B4 SINE B4 82 291 -1 9 1450 1324 151 26 48 chr11 113470283 113470513 -8373343 - URR1B DNA MER1_type 0 225 1 9 1450 810 215 96 20 chr11 113470578 113470777 -8373079 + B3 SINE B2 2 215 -1 9 1450 968 38 81 22 chr11 113470851 113470987 -8372869 + B1_Mus2 SINE Alu 2 145 -2 9 1450 662 308 115 55 chr11 113471031 113471508 -8372348 + HAL1 LINE L1 2001 2506 -1 9 1450 1155 98 13 17 chr11 113472084 113472320 -8371536 + (TGGA)n Simple_repeat Simple_repeat 1 234 0 9 1450 259 267 15 77 chr11 113473528 113473593 -8370263 + PB1 SINE Alu 2 62 -65 9 1450 410 275 56 18 chr11 113473899 113474090 -8369766 + Tigger7 DNA MER2_type 5 205 -134 9 1450 1222 48 7 0 chr11 113474108 113474254 -8369602 - B1_Mus1 SINE Alu -1 147 1 9 1450 963 109 141 0 chr11 113474283 113474439 -8369417 + B2_Mm1t SINE B2 2 179 -14 9 1450 372 83 325 54 chr11 113474490 113474599 -8369257 + B2_Mm2 SINE B2 47 188 -7 9 1450 510 261 49 49 chr11 113475898 113476083 -8367773 + B4 SINE B4 9 193 -99 9 1450 520 162 52 0 chr11 113476096 113476232 -8367624 + GA-rich Low_complexity Low_complexity 4 146 0 9 1450 218 395 53 0 chr11 113476355 113476469 -8367387 + MIRb SINE MIR 85 204 -64 9 1450 1236 48 0 0 chr11 113476473 113476620 -8367236 + B1_Mm SINE Alu 1 147 0 9 1450 342 281 17 27 chr11 113477198 113477343 -8366513 + MIRb SINE MIR 61 193 -15 9 1450 213 245 38 0 chr11 113477570 113477623 -8366233 + B1F2 SINE Alu 3 57 -92 9 1450 370 309 0 7 chr11 113477625 113477762 -8366094 + GA-rich Low_complexity Low_complexity 2 137 0 9 1450 360 214 0 28 chr11 113477764 113477836 -8366020 + B1F1 SINE Alu 42 111 -38 9 1450 1445 63 21 10 chr11 113478243 113478436 -8365420 + B2_Mm2 SINE B2 1 195 0 9 1450 539 78 39 0 chr11 113479739 113479842 -8364014 + (TC)n Simple_repeat Simple_repeat 2 108 0 9 1450 207 167 0 0 chr11 113481447 113481483 -8362373 + C-rich Low_complexity Low_complexity 1 36 0 9 1450 396 0 0 0 chr11 113481835 113481879 -8361977 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1450 239 143 0 39 chr11 113482443 113482494 -8361362 + CT-rich Low_complexity Low_complexity 3 51 0 9 1450 315 0 0 0 chr11 113483312 113483347 -8360509 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1450 202 193 137 74 chr11 113483518 113483613 -8360243 + MIRc SINE MIR 32 132 -136 9 1450 459 0 0 0 chr11 113483691 113483742 -8360114 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 9 1450 1067 106 56 0 chr11 113483742 113483894 -8359962 - B2_Mm2 SINE B2 -32 163 3 9 1450 276 30 0 0 chr11 113483914 113483947 -8359909 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 9 1450 212 184 20 0 chr11 113484113 113484162 -8359694 + GA-rich Low_complexity Low_complexity 3 52 0 9 1450 246 359 11 0 chr11 113484289 113484381 -8359475 - MIRb SINE MIR -7 261 169 9 1450 234 0 0 0 chr11 113484787 113484813 -8359043 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1450 301 290 60 0 chr11 113484851 113484951 -8358905 + B1F SINE Alu 5 110 -39 9 1450 261 209 16 8 chr11 113484963 113485088 -8358768 + GA-rich Low_complexity Low_complexity 1 126 0 9 1450 846 236 11 11 chr11 113485088 113485268 -8358588 + B4 SINE B4 7 186 -106 9 1450 365 238 9 73 chr11 113485178 113485287 -8358569 + PB1D9 SINE Alu 13 114 -6 9 1450 198 71 0 0 chr11 113485312 113485340 -8358516 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1450 1162 44 15 0 chr11 113487703 113487839 -8356017 + B1_Mm SINE Alu 1 138 -9 9 1450 1047 109 0 0 chr11 113487839 113487995 -8355861 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 9 1450 411 21 0 0 chr11 113488397 113488445 -8355411 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1450 569 294 76 69 chr11 113488683 113488972 -8354884 - B4A SINE B4 0 292 2 9 1450 501 274 13 58 chr11 113489020 113489175 -8354681 - RSINE1 SINE B4 -15 150 3 9 1450 1108 115 24 6 chr11 113489191 113489357 -8354499 + B2_Mm2 SINE B2 2 170 -25 9 1450 899 53 107 57 chr11 113489495 113489635 -8354221 + B1_Mm SINE Alu 1 147 0 9 1450 315 49 0 0 chr11 113489673 113489714 -8354142 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1450 444 37 0 0 chr11 113490315 113490369 -8353487 + (GGA)n Simple_repeat Simple_repeat 1 54 0 9 1450 1431 50 0 0 chr11 113490369 113490549 -8353307 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 9 1450 736 292 27 98 chr11 113491019 113491271 -8352585 + B4 SINE B4 18 259 -33 9 1450 344 40 0 20 chr11 113491271 113491322 -8352534 + (CACAC)n Simple_repeat Simple_repeat 1 50 0 9 1450 736 292 27 98 chr11 113491322 113491365 -8352491 + B4 SINE B4 260 292 0 9 1450 34 0 0 0 chr11 113491457 113491491 -8352365 + AT_rich Low_complexity Low_complexity 1 34 0 9 1450 1068 196 82 0 chr11 113491496 113491690 -8352166 - B3 SINE B2 -6 210 1 9 1450 1101 131 0 0 chr11 113491737 113491913 -8351943 + (GAA)n Simple_repeat Simple_repeat 2 177 0 9 1450 834 250 26 0 chr11 113492036 113492228 -8351628 + B3A SINE B2 2 198 0 9 1450 459 0 0 0 chr11 113492797 113492848 -8351008 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1450 939 207 67 10 chr11 113493733 113493928 -8349928 + B3 SINE B2 1 206 -10 9 1450 249 57 0 0 chr11 113493942 113493977 -8349879 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 9 1450 1278 171 122 61 chr11 113494470 113494735 -8349121 - ORR1D1 LTR MaLR -43 331 31 9 1450 318 26 0 0 chr11 113494735 113494774 -8349082 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1450 1278 171 122 61 chr11 113494774 113494820 -8349036 - ORR1D1 LTR MaLR -344 30 1 9 1450 850 88 9 0 chr11 113495096 113495210 -8348646 + B2_Mm1t SINE B2 2 116 -77 9 1450 232 286 110 73 chr11 113495210 113495232 -8348624 + B4A SINE B4 2 142 -150 9 1450 612 139 56 14 chr11 113495236 113495359 -8348497 + B2_Mm2 SINE B2 47 189 -4 9 1450 941 68 260 20 chr11 113495369 113495519 -8348337 - B2_Mm2 SINE B2 -9 186 1 9 1450 893 194 0 0 chr11 113495557 113495701 -8348155 + B1_Mur4 SINE Alu 1 144 -6 9 1450 836 28 19 0 chr11 113495702 113495808 -8348048 + (GGAA)n Simple_repeat Simple_repeat 4 111 0 9 1450 880 259 61 9 chr11 113496219 113496440 -8347416 + B4A SINE B4 1 233 -59 9 1450 743 247 85 16 chr11 113496440 113496629 -8347227 + B3 SINE B2 2 203 -13 9 1450 278 254 0 0 chr11 113496639 113496694 -8347162 + B4A SINE B4 224 278 -14 9 1450 411 56 0 0 chr11 113496699 113496753 -8347103 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1450 195 42 0 0 chr11 113497554 113497578 -8346278 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 9 1450 207 188 0 0 chr11 113497756 113497804 -8346052 + GA-rich Low_complexity Low_complexity 3 50 0 9 1450 653 207 14 29 chr11 113498099 113498238 -8345618 + ID_B1 SINE B4 81 217 -7 9 1450 776 156 22 22 chr11 113498243 113498381 -8345475 + B1_Mur1 SINE Alu 3 140 -9 9 1450 247 164 316 40 chr11 113498429 113498505 -8345351 + B3A SINE B2 1 97 -101 9 1450 189 74 0 0 chr11 113498568 113498595 -8345261 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 1450 264 319 151 0 chr11 113498604 113498723 -8345133 - MIRb SINE MIR -38 230 94 9 1450 985 130 0 0 chr11 113498881 113499019 -8344837 + B1_Mus1 SINE Alu 5 142 -6 9 1450 351 65 0 0 chr11 113499023 113499069 -8344787 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 9 1450 482 283 17 34 chr11 113499145 113499262 -8344594 - PB1 SINE Alu -7 120 6 1 1450 1000 240 5 10 chr11 113499304 113499510 -8344346 - B3 SINE B2 -10 206 2 1 1450 312 206 252 10 chr11 113500010 113500113 -8343743 + RMER10B LTR ERVL 271 398 0 1 1450 310 281 0 24 chr11 113500410 113500494 -8343362 + ID4_ SINE ID 1 82 -1 2 1450 765 240 136 36 chr11 113500544 113500795 -8343061 + B4 SINE B4 1 276 -16 3 1450 422 293 114 0 chr11 113501182 113501322 -8342534 + RSINE1 SINE B4 2 157 -8 4 1450 910 209 73 15 chr11 113501337 113501541 -8342315 - B3 SINE B2 0 216 1 5 1450 256 163 0 0 chr11 113501628 113501671 -8342185 + B3 SINE B2 41 83 -133 6 1450 885 241 60 60 chr11 113501671 113501923 -8341933 - ORR1D2 LTR MaLR -118 252 1 7 1450 933 286 142 55 chr11 113502113 113502823 -8341033 + Lx8 LINE L1 6686 7457 -16 8 1450 195 69 0 0 chr11 113502908 113502937 -8340919 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1450 729 206 200 0 chr11 113502958 113503138 -8340718 + B3 SINE B2 1 216 0 1 1450 432 0 0 0 chr11 113503143 113503191 -8340665 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1450 244 310 77 39 chr11 113503339 113503443 -8340413 - L2a LINE L2 -2 3424 3317 1 1450 588 259 29 0 chr11 113503474 113503613 -8340243 + RSINE1 SINE B4 4 146 -19 1 1450 357 93 56 0 chr11 113503618 113503672 -8340184 - HAL1-3A_ME LINE L1 -827 2031 1975 1 1450 649 187 23 0 chr11 113503674 113503845 -8340011 + (TATG)n Simple_repeat Simple_repeat 4 178 0 1 1450 549 118 4 70 chr11 113504293 113504576 -8339280 + GA-rich Low_complexity Low_complexity 1 264 0 1 1450 260 385 23 45 chr11 113504833 113505010 -8338846 + MER58A DNA MER1_type 4 176 -48 1 1450 902 206 23 12 chr11 113505001 113505173 -8338683 + ID_B1 SINE B4 47 220 -4 1 1450 228 261 42 42 chr11 113506149 113506221 -8337635 - MTEb LTR MaLR -16 363 292 1 1450 1062 229 24 5 chr11 113506580 113506791 -8337065 + B3 SINE B2 1 215 -1 2 1450 391 305 0 28 chr11 113506815 113506923 -8336933 + PB1D10 SINE Alu 1 105 -12 2 1450 374 258 75 0 chr11 113506970 113507063 -8336793 + B1F SINE Alu 16 115 -34 2 1450 252 227 107 0 chr11 113507423 113507498 -8336358 - MTD LTR MaLR 0 419 337 2 1450 984 241 61 30 chr11 113507500 113507830 -8336026 + RLTR15 LTR ERVK 4 343 -16 2 1450 1104 241 132 3 chr11 113507842 113508129 -8335727 - MTD LTR MaLR -78 341 18 2 1451 800 191 107 48 chr11 113508389 113508576 -8335280 + B3A SINE B2 1 198 0 2 1451 382 270 81 81 chr11 113510485 113510646 -8333210 + RSINE1 SINE B4 1 161 -4 2 1451 539 284 31 31 chr11 113512290 113512450 -8331406 - MLT1A1 LTR MaLR -1 407 248 2 1451 818 170 0 33 chr11 113512905 113513057 -8330799 - B1_Mur3 SINE Alu 0 149 3 2 1451 199 394 20 20 chr11 113514062 113514163 -8329693 - L2b LINE L2 -30 3345 3245 2 1451 410 264 85 0 chr11 113514770 113514876 -8328980 + PB1 SINE Alu 5 119 -8 3 1451 246 128 0 0 chr11 113514918 113514957 -8328899 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 3 1451 662 271 19 19 chr11 113515563 113515721 -8328135 + B3A SINE B2 2 159 -39 3 1451 203 0 37 0 chr11 113515773 113515800 -8328056 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1451 724 210 51 0 chr11 113516079 113516217 -8327639 + B1_Mur1 SINE Alu 3 147 -2 3 1451 448 297 69 75 chr11 113516701 113517047 -8326809 - ORR1E LTR MaLR -5 354 11 3 1451 756 73 324 29 chr11 113519456 113519626 -8324230 - Lx3_Mus LINE L1 0 7009 6790 3 1451 298 369 134 26 chr11 113519975 113520206 -8323650 + MER47B DNA MER2_type 3 258 -160 3 1451 1256 34 0 0 chr11 113521004 113521151 -8322705 - B1_Mus2 SINE Alu 0 147 1 3 1451 297 0 0 0 chr11 113521249 113521282 -8322574 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1451 396 0 0 0 chr11 113521282 113521325 -8322531 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1451 675 140 202 0 chr11 113521348 113521462 -8322394 + B1_Mur3 SINE Alu 5 141 -8 4 1451 215 61 0 29 chr11 113521467 113521501 -8322355 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 4 1451 943 175 31 16 chr11 113521585 113521777 -8322079 + B2_Mm2 SINE B2 1 195 0 4 1451 1455 33 32 16 chr11 113521802 113521988 -8321868 + B2_Mm1t SINE B2 2 190 -3 4 1451 1241 54 0 0 chr11 113522025 113522172 -8321684 + B1_Mus2 SINE Alu 1 147 0 4 1451 207 0 0 0 chr11 113522387 113522410 -8321446 + (CCGGG)n Simple_repeat Simple_repeat 5 27 0 4 1451 226 200 167 0 chr11 113524816 113524876 -8318980 - L1MD2 LINE L1 -6087 460 391 4 1451 795 267 26 0 chr11 113524949 113525140 -8318716 - Lx7 LINE L1 -1909 5787 5592 4 1451 216 262 91 45 chr11 113526806 113526894 -8316962 - PB1D10 SINE Alu -20 97 6 4 1451 198 0 0 0 chr11 113527120 113527142 -8316714 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1451 475 268 0 51 chr11 113527152 113527270 -8316586 + RSINE1 SINE B4 3 114 -51 5 1451 478 279 118 0 chr11 113527641 113527802 -8316054 - B3 SINE B2 -36 180 1 5 1451 232 306 65 0 chr11 113529822 113529884 -8313972 + PB1D10 SINE Alu 21 86 -31 5 1451 244 290 180 20 chr11 113529967 113530217 -8313639 + Lx8 LINE L1 6459 6748 -725 5 1451 246 317 105 21 chr11 113530311 113530501 -8313355 + Lx8 LINE L1 6927 7132 -341 5 1451 527 266 9 9 chr11 113530501 113530615 -8313241 + RSINE1 SINE B4 16 129 -36 5 1451 241 256 23 114 chr11 113530642 113530730 -8313126 + MT2B LTR ERVL 156 235 -366 5 1451 617 115 73 46 chr11 113530660 113530769 -8313087 + PB1D9 SINE Alu 9 120 0 5 1451 183 156 0 0 chr11 113531200 113531232 -8312624 + GA-rich Low_complexity Low_complexity 2 33 0 5 1451 339 127 0 0 chr11 113531247 113531310 -8312546 + (CAGG)n Simple_repeat Simple_repeat 3 65 0 5 1451 790 142 0 93 chr11 113531349 113531489 -8312367 - B1_Mur2 SINE Alu -18 131 5 6 1451 254 254 42 5 chr11 113531618 113531707 -8312149 + B1F2 SINE Alu 13 103 -14 6 1451 554 243 31 111 chr11 113531838 113532000 -8311856 + B1F SINE Alu 1 149 0 6 1451 22 43 0 21 chr11 113532115 113532144 -8311712 + AT_rich Low_complexity Low_complexity 1 29 0 6 1451 1284 108 27 0 chr11 113532144 113532330 -8311526 + B2_Mm1t SINE B2 2 192 -1 6 1451 22 43 0 21 chr11 113532330 113532347 -8311509 + AT_rich Low_complexity Low_complexity 1 17 0 6 1451 1267 90 33 17 chr11 113532361 113532541 -8311315 - B2_Mm1t SINE B2 -9 184 2 6 1451 1008 202 64 5 chr11 113532569 113532773 -8311083 + B3 SINE B2 1 216 0 6 1451 361 206 16 0 chr11 113532806 113532869 -8310987 + ID2 SINE ID 4 67 -16 6 1451 544 254 50 21 chr11 113533289 113533430 -8310426 - B1F SINE Alu -4 145 1 6 1451 1255 35 0 14 chr11 113533463 113533610 -8310246 - B1_Mus2 SINE Alu -2 145 1 7 1451 840 276 20 5 chr11 113533659 113533856 -8310000 + B3 SINE B2 10 209 -7 7 1451 1382 96 11 0 chr11 113533954 113534141 -8309715 + B2_Mm1t SINE B2 2 190 -3 7 1451 519 176 8 112 chr11 113534219 113534242 -8309614 + MT2B LTR ERVL 145 153 -448 7 1451 969 58 50 0 chr11 113534242 113534381 -8309475 + B1_Mus2 SINE Alu 2 147 0 7 1451 909 275 58 31 chr11 113534445 113534670 -8309186 + B4A SINE B4 1 231 -61 7 1451 348 229 218 15 chr11 113534672 113534805 -8309051 + RSINE1 SINE B4 6 165 0 7 1451 879 168 222 0 chr11 113535672 113535839 -8308017 - B3 SINE B2 -12 204 1 7 1451 981 134 0 45 chr11 113536451 113536607 -8307249 + B1_Mur3 SINE Alu 1 149 0 7 1451 408 239 239 0 chr11 113536622 113536731 -8307125 + B1_Mur1 SINE Alu 1 135 -14 7 1451 1266 34 0 7 chr11 113536766 113536914 -8306942 + B1_Mm SINE Alu 1 147 0 8 1451 208 49 23 47 chr11 113536917 113536960 -8306896 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1451 409 272 155 66 chr11 113537018 113537199 -8306657 + B3 SINE B2 16 212 -4 8 1451 180 0 0 0 chr11 113537435 113537455 -8306401 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1451 204 67 0 0 chr11 113538245 113538275 -8305581 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1451 372 324 3 3 chr11 113538367 113538497 -8305359 + B1F1 SINE Alu 20 149 0 8 1451 227 277 31 0 chr11 113539404 113539469 -8304387 - MER3 DNA MER1_type -1 208 142 8 1451 465 242 156 0 chr11 113539481 113539609 -8304247 + B1_Mur1 SINE Alu 2 149 0 8 1451 22 0 0 0 chr11 113539609 113539631 -8304225 + AT_rich Low_complexity Low_complexity 1 22 0 8 1451 428 294 25 16 chr11 113539640 113539761 -8304095 + B1F1 SINE Alu 2 123 -26 8 1451 1702 26 0 0 chr11 113540150 113540343 -8303513 + B2_Mm1a SINE B2 1 193 0 9 1451 21 0 0 0 chr11 113540343 113540364 -8303492 + AT_rich Low_complexity Low_complexity 1 21 0 9 1451 599 203 110 20 chr11 113540706 113540852 -8303004 + RSINE1 SINE B4 2 160 -5 9 1451 523 220 101 43 chr11 113541002 113541140 -8302716 - B1_Mur1 SINE Alu -1 148 3 9 1451 768 162 244 6 chr11 113541390 113541558 -8302298 - B3 SINE B2 -6 210 3 9 1451 575 232 27 40 chr11 113541730 113541878 -8301978 + B1_Mur3 SINE Alu 3 148 -1 9 1451 217 233 0 0 chr11 113541880 113541940 -8301916 + A-rich Low_complexity Low_complexity 1 60 0 9 1451 225 0 0 0 chr11 113541955 113541980 -8301876 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1451 1208 55 7 0 chr11 113542128 113542274 -8301582 + B1_Mus2 SINE Alu 1 147 0 9 1451 213 121 0 0 chr11 113542278 113542311 -8301545 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1451 517 236 102 0 chr11 113542969 113543096 -8300760 - B1_Mur1 SINE Alu 0 149 10 1 1451 27 0 0 0 chr11 113543274 113543301 -8300555 + AT_rich Low_complexity Low_complexity 1 27 0 1 1451 464 244 41 59 chr11 113544003 113544196 -8299660 + B3 SINE B2 2 211 -5 1 1451 619 234 8 8 chr11 113546060 113546189 -8297667 + ID_B1 SINE B4 84 212 -12 1 1451 726 183 7 40 chr11 113546461 113546609 -8297247 + B1_Mur2 SINE Alu 1 143 -6 1 1451 1153 61 0 20 chr11 113546634 113546784 -8297072 + B1_Mus1 SINE Alu 1 147 -1 1 1451 480 144 54 22 chr11 113547389 113547481 -8296375 - B1_Mus2 SINE Alu 0 147 53 1 1451 252 232 0 55 chr11 113547435 113547508 -8296348 - RLTR25A LTR ERVK -531 572 504 1 1451 204 40 0 0 chr11 113547567 113547592 -8296264 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1451 1208 36 0 0 chr11 113547592 113547730 -8296126 - B1_Mus2 SINE Alu -9 138 1 1 1451 243 0 0 0 chr11 113547740 113547767 -8296089 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1451 180 0 0 0 chr11 113547827 113547847 -8296009 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 1451 531 221 244 29 chr11 113547848 113548020 -8295836 - ID_B1 SINE B4 -12 212 4 1 1451 241 310 96 17 chr11 113548236 113548351 -8295505 - B3 SINE B2 -4 212 89 1 1451 1242 211 180 21 chr11 113548351 113548729 -8295127 + RMER10A LTR ERVL 1 438 -4 1 1451 407 171 60 45 chr11 113548901 113549006 -8294850 - B1_Mur2 SINE Alu -2 147 47 1 1451 299 274 136 95 chr11 113550730 113550899 -8292957 + MT2B LTR ERVL 82 257 -344 1 1451 486 178 0 0 chr11 113550845 113550918 -8292938 + B1_Mus2 SINE Alu 49 121 -26 1 1451 618 241 7 33 chr11 113551282 113551432 -8292424 - B3A SINE B2 -47 151 6 1 1451 897 151 7 27 chr11 113551547 113551697 -8292159 - B1_Mur3 SINE Alu -2 147 1 1 1451 634 265 70 20 chr11 113551715 113551915 -8291941 - B3 SINE B2 -6 210 1 1 1451 180 0 0 0 chr11 113553287 113553307 -8290549 + (CAGT)n Simple_repeat Simple_repeat 4 23 0 1 1451 251 314 56 28 chr11 113554149 113554293 -8289563 - B1F1 SINE Alu -1 148 1 1 1451 1128 184 29 14 chr11 113554334 113554543 -8289313 - B3 SINE B2 -4 212 1 1 1451 482 261 27 0 chr11 113554562 113554673 -8289183 + PB1D10 SINE Alu 3 116 -1 1 1451 937 252 10 5 chr11 113554798 113555001 -8288855 + B3 SINE B2 1 204 -12 1 1451 1057 75 13 27 chr11 113555124 113555274 -8288582 + B1_Mus1 SINE Alu 1 148 0 1 1451 195 301 192 10 chr11 113555293 113555397 -8288459 - L4 LINE RTE -777 1252 1130 1 1451 428 113 212 20 chr11 113556096 113556195 -8287661 - PB1D9 SINE Alu 0 120 3 1 1451 1191 138 176 4 chr11 113556241 113556474 -8287382 - MTC LTR MaLR -148 273 1 1 1451 1127 171 48 24 chr11 113556850 113557060 -8286796 + B3 SINE B2 1 215 -1 1 1451 341 290 40 10 chr11 113557069 113557170 -8286686 + RSINE1 SINE B4 58 161 -4 1 1451 363 200 53 0 chr11 113557182 113557257 -8286599 + ID4 SINE ID 5 83 0 1 1451 1107 67 0 0 chr11 113557265 113557400 -8286456 + B1_Mus2 SINE Alu 1 135 -12 1 1451 442 262 19 0 chr11 113557452 113557559 -8286297 + PB1D10 SINE Alu 1 109 -8 1 1451 360 305 136 7 chr11 113557585 113557740 -8286116 + ID_B1 SINE B4 44 218 -6 1 1451 221 211 58 0 chr11 113557694 113557746 -8286110 + PB1D7 SINE Alu 66 120 0 1 1451 1215 98 0 0 chr11 113557998 113558171 -8285685 + B2_Mm2 SINE B2 1 173 -22 1 1451 1017 197 195 44 chr11 113558145 113558463 -8285393 - ORR1D1 LTR MaLR -8 366 1 1 1451 923 130 72 0 chr11 113558811 113558949 -8284907 - B1_Mur4 SINE Alu 0 150 3 1 1451 928 254 90 74 chr11 113559117 113559482 -8284374 + MTEa LTR MaLR 9 379 0 1 1451 896 138 36 0 chr11 113560041 113560179 -8283677 - B1_Mur4 SINE Alu -7 143 1 1 1451 231 356 0 0 chr11 113560280 113560367 -8283489 + PB1 SINE Alu 38 124 -3 1 1451 427 220 80 0 chr11 113560501 113560601 -8283255 - ID_B1 SINE B4 -2 222 115 1 1451 270 0 0 0 chr11 113560754 113560784 -8283072 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1451 553 228 17 9 chr11 113560795 113560910 -8282946 - PB1D9 SINE Alu -2 118 3 1 1451 492 201 36 65 chr11 113560917 113561055 -8282801 - B1F1 SINE Alu -2 147 14 1 1451 315 0 0 0 chr11 113561480 113561515 -8282341 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1451 344 255 30 10 chr11 113561551 113561650 -8282206 - ID_B1 SINE B4 -2 222 122 1 1451 1065 43 0 0 chr11 113561902 113562041 -8281815 - B1_Mm SINE Alu 0 147 9 1 1451 218 208 57 0 chr11 113562369 113562422 -8281434 - B3A SINE B2 -122 76 21 1 1451 676 146 26 93 chr11 113562488 113562639 -8281217 + B1F2 SINE Alu 3 143 -6 1 1451 202 122 0 68 chr11 113562639 113562683 -8281173 + GA-rich Low_complexity Low_complexity 3 43 0 1 1451 540 312 38 0 chr11 113562951 113563108 -8280748 + RSINE1 SINE B4 3 165 0 1 1451 299 250 0 0 chr11 113564001 113564069 -8279787 + ID4 SINE ID 2 69 -14 1 1451 377 266 27 27 chr11 113565363 113565475 -8278381 - RMER15 LTR ERVL -117 458 347 1 1451 485 194 9 67 chr11 113565587 113565692 -8278164 + B1_Mur2 SINE Alu 1 99 -50 1 1451 217 211 0 0 chr11 113565757 113565795 -8278061 - PB1D9 SINE Alu -72 48 11 1 1451 207 88 0 0 chr11 113565815 113565849 -8278007 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1451 1309 14 0 0 chr11 113565849 113565996 -8277860 - B1_Mus2 SINE Alu 0 147 1 1 1451 675 197 62 25 chr11 113566408 113566569 -8277287 - RMER10B LTR ERVL 0 398 232 1 1451 269 279 11 11 chr11 113566674 113566761 -8277095 + MER113 DNA MER1_type 309 395 -126 1 1451 23 33 0 0 chr11 113566793 113566823 -8277033 + GC_rich Low_complexity Low_complexity 1 30 0 1 1451 815 241 49 5 chr11 113567089 113567293 -8276563 - B3 SINE B2 -3 213 1 1 1451 580 133 168 0 chr11 113567305 113567418 -8276438 - B1_Mur4 SINE Alu -8 142 11 1 1451 334 218 112 56 chr11 113567332 113567439 -8276417 - MT2B LTR ERVL -337 264 152 1 1451 617 259 7 0 chr11 113567443 113567586 -8276270 - ID_B1 SINE B4 -1 223 80 1 1451 22 0 0 0 chr11 113568173 113568195 -8275661 + AT_rich Low_complexity Low_complexity 1 22 0 1 1451 1472 55 39 0 chr11 113568195 113568377 -8275479 + B2_Mm2 SINE B2 2 190 -5 1 1451 1641 27 5 0 chr11 113568381 113568567 -8275289 + B2_Mm1a SINE B2 2 188 -5 1 1451 1282 34 0 0 chr11 113568574 113568721 -8275135 + B1_Mus2 SINE Alu 1 147 0 1 1451 234 0 0 0 chr11 113568721 113568747 -8275109 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1451 748 215 53 39 chr11 113568747 113568955 -8274901 - B3 SINE B2 -3 213 3 1 1451 695 238 134 0 chr11 113568955 113569127 -8274729 - ID_B1 SINE B4 -9 215 21 1 1451 210 37 0 0 chr11 113569359 113569386 -8274470 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1451 261 0 0 0 chr11 113569386 113569415 -8274441 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1451 288 196 144 52 chr11 113572574 113572671 -8271185 - PB1D9 SINE Alu 0 120 15 1 1451 1324 83 0 16 chr11 113572672 113572856 -8271000 + B2_Mm2 SINE B2 2 182 -13 1 1451 342 0 0 0 chr11 113572891 113572929 -8270927 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1451 770 136 7 64 chr11 113573022 113573163 -8270693 + B1_Mur4 SINE Alu 1 133 -17 1 1451 485 268 0 47 chr11 113573626 113573685 -8270171 + B1F SINE Alu 27 82 -67 1 1451 1314 210 108 80 chr11 113573685 113573872 -8269984 + ORR1D1 LTR MaLR 1 178 -196 1 1451 180 0 0 0 chr11 113573872 113573892 -8269964 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1451 1314 210 108 80 chr11 113573892 113574066 -8269790 + ORR1D1 LTR MaLR 179 371 -3 1 1451 485 268 0 47 chr11 113574066 113574135 -8269721 + B1F SINE Alu 83 149 0 1 1451 1077 112 30 183 chr11 113574148 113574378 -8269478 + B2_Mm2 SINE B2 1 195 0 1 1451 483 260 12 102 chr11 113574391 113574477 -8269379 + ID_B1 SINE B4 55 136 -88 1 1451 1203 42 0 7 chr11 113574477 113574615 -8269241 + B1_Mus2 SINE Alu 2 139 -8 1 1451 207 0 0 0 chr11 113574615 113574638 -8269218 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1451 483 260 12 102 chr11 113574643 113574723 -8269133 + ID_B1 SINE B4 137 206 -18 1 1451 865 48 155 14 chr11 113574933 113575081 -8268775 + B2_Mm2 SINE B2 2 170 -25 1 1451 1822 149 54 8 chr11 113575107 113575478 -8268378 - RMER17C LTR ERVK -21 389 2 1 1451 658 170 7 29 chr11 113576008 113576147 -8267709 - B1_Mur1 SINE Alu -1 148 13 1 1451 23 0 0 0 chr11 113576162 113576185 -8267671 + AT_rich Low_complexity Low_complexity 1 23 0 1 1451 775 215 0 48 chr11 113576203 113576369 -8267487 - RSINE1 SINE B4 -4 161 4 1 1451 1185 30 0 0 chr11 113577033 113577167 -8266689 + B1_Mus2 SINE Alu 2 135 -12 1 1451 1020 17 0 0 chr11 113577167 113577285 -8266571 + (GAA)n Simple_repeat Simple_repeat 1 118 0 1 1451 672 194 96 7 chr11 113577732 113577867 -8265989 + B1_Mur1 SINE Alu 3 149 0 1 1451 263 269 151 0 chr11 113577932 113578025 -8265831 + MLT1D LTR MaLR 1 107 -398 1 1451 232 235 161 23 chr11 113578030 113578117 -8265739 - PB1D10 SINE Alu -1 116 18 1 1451 482 221 50 58 chr11 113578260 113578380 -8265476 - B1_Mur1 SINE Alu -30 119 1 1 1451 495 260 129 50 chr11 113579627 113579829 -8264027 + ID_B1 SINE B4 1 218 -6 1 1451 671 239 207 6 chr11 113579835 113580044 -8263812 + B4A SINE B4 1 254 -38 1 1451 618 246 66 39 chr11 113580046 113580204 -8263652 + B3 SINE B2 15 166 -50 2 1451 234 0 0 0 chr11 113580204 113580230 -8263626 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2 1451 618 246 66 39 chr11 113580230 113580253 -8263603 + B3 SINE B2 167 200 -16 2 1451 204 67 0 0 chr11 113580262 113580292 -8263564 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 1451 647 231 31 31 chr11 113580295 113580456 -8263400 + RSINE1 SINE B4 2 162 -3 2 1451 368 206 15 0 chr11 113580559 113580627 -8263229 - ID4_ SINE ID -10 73 5 2 1451 372 216 42 3 chr11 113580642 113580743 -8263113 - B1F SINE Alu -4 113 13 2 1451 307 299 9 45 chr11 113580752 113580864 -8262992 - PB1D10 SINE Alu 0 117 10 2 1451 263 318 107 36 chr11 113580867 113581092 -8262764 - MLT1A0 LTR MaLR -69 296 56 2 1451 844 185 0 0 chr11 113581175 113581305 -8262551 - B1_Mur2 SINE Alu -16 133 4 2 1451 624 202 11 17 chr11 113581326 113581507 -8262349 + CT-rich Low_complexity Low_complexity 1 180 0 2 1451 1417 28 0 11 chr11 113581507 113581687 -8262169 + (TTC)n Simple_repeat Simple_repeat 3 180 0 2 1451 369 0 0 0 chr11 113581687 113581728 -8262128 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1451 309 169 118 94 chr11 113581734 113581819 -8262037 - B1_Mur4 SINE Alu -41 109 23 2 1451 766 120 25 8 chr11 113581930 113582048 -8261808 + PB1D9 SINE Alu 1 120 0 2 1451 24 0 0 0 chr11 113582555 113582579 -8261277 + AT_rich Low_complexity Low_complexity 1 24 0 2 1451 1157 72 0 0 chr11 113582589 113582728 -8261128 - B1_Mus2 SINE Alu -8 139 1 2 1451 792 206 0 0 chr11 113582735 113582876 -8260980 - B1_Mur1 SINE Alu -7 142 2 2 1451 348 43 0 0 chr11 113582883 113582929 -8260927 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 2 1451 734 206 61 30 chr11 113582929 113583094 -8260762 - B3 SINE B2 -8 208 39 2 1451 2665 156 62 26 chr11 113583098 113583567 -8260289 + RLTR20A2 LTR ERVK 1 493 -85 2 1451 459 0 0 0 chr11 113583567 113583618 -8260238 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1451 2665 156 62 26 chr11 113583618 113583694 -8260162 + RLTR20A2 LTR ERVK 494 565 -13 2 1451 352 286 44 0 chr11 113585283 113585374 -8258482 + RSINE1 SINE B4 4 98 -67 2 1451 246 311 94 35 chr11 113585290 113585460 -8258396 + B2_Mm2 SINE B2 10 189 -6 2 1451 1192 43 7 0 chr11 113585935 113586076 -8257780 + B1_Mus1 SINE Alu 1 142 -6 2 1451 262 182 30 0 chr11 113587703 113587769 -8256087 + Lx2B LINE L1 6933 7000 0 2 1451 564 15 0 0 chr11 113587802 113587867 -8255989 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1451 618 240 68 0 chr11 113587909 113588055 -8255801 + MTE2a LTR MaLR 100 255 -124 2 1451 420 250 71 0 chr11 113588628 113588740 -8255116 + PB1D7 SINE Alu 1 120 0 2 1451 1263 41 0 0 chr11 113591884 113592030 -8251826 + B1_Mm SINE Alu 2 147 0 2 1451 370 286 87 115 chr11 113593060 113593348 -8250508 + B4A SINE B4 2 281 -11 2 1451 1187 187 34 0 chr11 113593367 113593576 -8250280 - B3 SINE B2 0 216 1 2 1451 234 0 0 0 chr11 113595432 113595458 -8248398 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 2 1451 553 356 45 65 chr11 113595729 113596081 -8247775 + MER2 DNA MER2_type 1 345 0 2 1451 423 52 0 0 chr11 113596384 113596442 -8247414 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1451 189 0 0 0 chr11 113597203 113597224 -8246632 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1451 389 287 0 49 chr11 113597458 113597473 -8246383 - ID_B1 SINE B4 -2 222 209 2 1451 261 0 0 0 chr11 113597473 113597502 -8246354 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1451 389 287 0 49 chr11 113597502 113597629 -8246227 - ID_B1 SINE B4 -16 208 87 2 1451 288 277 55 89 chr11 113597507 113597709 -8246147 - RLTR25B LTR ERVK -508 520 326 2 1451 232 208 60 83 chr11 113597779 113597863 -8245993 + B4A SINE B4 3 84 -208 2 1451 773 228 136 37 chr11 113597945 113598136 -8245720 + B3 SINE B2 1 210 -6 2 1451 311 315 34 27 chr11 113598169 113598316 -8245540 + RSINE1 SINE B4 1 148 -17 2 1451 638 290 80 25 chr11 113598447 113598684 -8245172 + MER2 DNA MER2_type 96 345 0 2 1451 212 316 51 0 chr11 113598845 113598924 -8244932 - MIR SINE MIR -97 111 29 2 1451 228 245 0 0 chr11 113599173 113599222 -8244634 + PB1D10 SINE Alu 40 88 -29 2 1451 538 189 47 0 chr11 113599618 113599724 -8244132 + PB1D9 SINE Alu 5 115 -5 2 1451 333 314 102 0 chr11 113599809 113599927 -8243929 - RSINE1 SINE B4 -12 153 24 2 1451 216 0 0 0 chr11 113600041 113600065 -8243791 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 1451 680 202 155 21 chr11 113600308 113600495 -8243361 + B3 SINE B2 4 215 -1 2 1451 215 376 49 14 chr11 113600920 113601063 -8242793 - MIRb SINE MIR -10 258 111 2 1451 327 321 56 71 chr11 113601768 113601785 -8242071 - B2_Mm2 SINE B2 0 195 182 2 1451 1004 124 14 7 chr11 113601785 113601931 -8241925 + B1_Mur4 SINE Alu 4 150 0 2 1451 461 287 18 45 chr11 113601931 113602111 -8241745 - B3A SINE B2 -14 181 1 2 1451 682 259 155 9 chr11 113602194 113602420 -8241436 + B4A SINE B4 1 259 -33 2 1451 388 234 42 99 chr11 113602441 113602583 -8241273 + B3A SINE B2 62 195 -3 2 1451 231 245 202 77 chr11 113603000 113603029 -8240827 - B4A SINE B4 -6 286 247 2 1451 1146 65 0 0 chr11 113603029 113603167 -8240689 - B1_Mus1 SINE Alu -10 138 1 2 1451 585 220 24 17 chr11 113603171 113603304 -8240552 - B1F2 SINE Alu -7 142 14 2 1451 217 318 68 30 chr11 113603847 113603980 -8239876 + B1F SINE Alu 2 139 -10 2 1451 282 295 124 9 chr11 113604136 113604249 -8239607 + B1F SINE Alu 11 136 -13 2 1451 355 232 35 35 chr11 113604289 113604374 -8239482 + B1_Mur1 SINE Alu 54 138 -11 2 1451 274 23 47 0 chr11 113604374 113604417 -8239439 + (CAA)n Simple_repeat Simple_repeat 2 46 0 2 1451 564 224 19 26 chr11 113604449 113604605 -8239251 + B3 SINE B2 62 216 0 2 1451 362 285 5 0 chr11 113604967 113605060 -8238796 + PB1D10 SINE Alu 17 109 -8 2 1451 300 291 57 10 chr11 113605172 113605301 -8238555 + MER3 DNA MER1_type 37 171 -38 2 1451 449 299 82 12 chr11 113605301 113605545 -8238311 + Charlie5 DNA MER1_type 2235 2495 -129 2 1451 702 157 8 8 chr11 113605534 113605656 -8238200 - B1_Mur2 SINE Alu -6 143 22 2 1451 597 181 11 6 chr11 113605695 113605873 -8237983 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1451 210 174 0 0 chr11 113605884 113605930 -8237926 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1451 729 254 19 39 chr11 113605932 113606137 -8237719 - B3 SINE B2 -15 201 1 2 1451 1441 55 60 6 chr11 113606251 113606410 -8237446 + B2_Mm1a SINE B2 1 159 -34 2 1451 180 0 0 0 chr11 113606410 113606430 -8237426 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1451 1441 55 60 6 chr11 113606430 113606453 -8237403 + B2_Mm1a SINE B2 160 193 0 2 1451 565 153 210 0 chr11 113606464 113606588 -8237268 + B1_Mur4 SINE Alu 1 150 0 2 1451 316 353 22 61 chr11 113607249 113607430 -8236426 - MIRb SINE MIR -40 228 55 2 1451 473 248 90 28 chr11 113607592 113607737 -8236119 + RSINE1 SINE B4 1 154 -11 2 1451 261 83 0 0 chr11 113607737 113607773 -8236083 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1451 1213 49 7 0 chr11 113607788 113607932 -8235924 + B1_Mm SINE Alu 3 147 0 2 1451 603 257 63 23 chr11 113607980 113608155 -8235701 + B3 SINE B2 4 185 -31 2 1451 324 0 0 0 chr11 113608163 113608199 -8235657 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1451 1046 44 64 28 chr11 113614024 113614165 -8229691 + B1_Mm SINE Alu 2 147 0 2 1451 216 0 0 0 chr11 113614165 113614189 -8229667 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1451 1702 111 68 191 chr11 113614613 113614694 -8229162 + RMER17C LTR ERVK 1 82 -328 2 1451 1137 68 7 0 chr11 113614694 113614840 -8229016 + B1_Mus1 SINE Alu 2 148 0 2 1451 1645 57 0 0 chr11 113614844 113615037 -8228819 + B2_Mm1t SINE B2 1 193 0 2 1451 1702 111 68 191 chr11 113615037 113615417 -8228439 + RMER17C LTR ERVK 83 410 0 2 1451 189 0 0 0 chr11 113616145 113616166 -8227690 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1451 291 247 13 25 chr11 113616578 113616657 -8227199 - ID4_ SINE ID -4 79 2 2 1451 676 267 211 26 chr11 113617292 113617600 -8226256 + RCHARR1 DNA MER1_type 33 397 -577 2 1451 402 193 16 4 chr11 113617605 113617717 -8226139 - B1_Mur2 SINE Alu -21 128 18 2 1451 255 188 0 0 chr11 113617708 113617756 -8226100 + B3 SINE B2 155 202 -14 2 1451 199 72 0 45 chr11 113617771 113617815 -8226041 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1451 850 143 64 0 chr11 113617816 113617956 -8225900 - B1_Mur4 SINE Alu 0 150 2 2 1451 236 224 0 0 chr11 113618644 113618693 -8225163 + RCHARR1 DNA MER1_type 403 451 -523 2 1451 198 0 0 0 chr11 113618698 113618720 -8225136 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 1451 876 85 7 37 chr11 113618723 113618858 -8224998 - B1_Mm SINE Alu -10 137 7 2 1451 399 171 13 13 chr11 113618908 113618985 -8224871 - B3A SINE B2 -121 77 1 2 1451 383 226 0 94 chr11 113618998 113619066 -8224790 + RCHARR1 DNA MER1_type 451 517 -457 2 1451 315 0 0 0 chr11 113619066 113619101 -8224755 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1451 486 49 0 0 chr11 113619101 113619161 -8224695 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1451 383 226 0 94 chr11 113619161 113619181 -8224675 + RCHARR1 DNA MER1_type 518 530 -444 2 1451 1292 72 21 53 chr11 113619181 113619371 -8224485 + B2_Mm1a SINE B2 1 184 -9 2 1451 383 226 0 94 chr11 113619371 113619407 -8224449 + RCHARR1 DNA MER1_type 531 564 -410 2 1451 1130 68 0 14 chr11 113619461 113619609 -8224247 - B1_Mm SINE Alu 0 147 2 2 1451 1738 248 12 14 chr11 113619618 113620032 -8223824 + RCHARR1 DNA MER1_type 560 972 -2 2 1451 180 77 0 0 chr11 113620032 113620058 -8223798 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 2 1451 669 268 64 6 chr11 113622007 113622180 -8221676 + ID_B1 SINE B4 39 221 -3 2 1451 650 127 89 18 chr11 113622204 113622301 -8221555 + PB1D9 SINE Alu 1 107 -13 2 1451 198 0 0 0 chr11 113622301 113622323 -8221533 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2 1451 650 127 89 18 chr11 113622323 113622337 -8221519 + PB1D9 SINE Alu 108 120 0 2 1451 387 0 0 0 chr11 113622403 113622446 -8221410 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1451 529 83 0 37 chr11 113622446 113622544 -8221312 - B1_Mus2 SINE Alu -4 145 61 3 1451 551 287 12 31 chr11 113622587 113622749 -8221107 + RSINE1 SINE B4 3 161 -4 3 1451 1162 156 91 24 chr11 113623198 113623408 -8220448 + URR1B DNA MER1_type 2 225 0 3 1451 315 0 0 0 chr11 113623669 113623704 -8220152 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1451 180 0 0 0 chr11 113623801 113623821 -8220035 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1451 305 24 24 0 chr11 113624246 113624288 -8219568 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1451 1076 43 0 0 chr11 113624288 113624428 -8219428 - B1_Mm SINE Alu 0 147 8 3 1451 605 225 39 178 chr11 113624290 113624549 -8219307 - B4 SINE B4 -69 223 1 3 1451 183 72 47 23 chr11 113624550 113624593 -8219263 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 1451 198 0 0 0 chr11 113624594 113624616 -8219240 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1451 585 234 32 58 chr11 113624621 113624775 -8219081 - RSINE1 SINE B4 -14 151 2 3 1451 481 241 73 35 chr11 113625280 113625460 -8218396 - MLT1G3 LTR MaLR -174 421 226 3 1451 359 267 0 0 chr11 113625713 113625788 -8218068 - PB1D10 SINE Alu 0 117 43 3 1451 478 252 18 26 chr11 113625832 113625945 -8217911 - MLT1G3 LTR MaLR -236 154 43 3 1451 1139 223 88 84 chr11 113625945 113626124 -8217732 + MTE2a LTR MaLR 1 175 -204 3 1451 1223 157 15 10 chr11 113626124 113626324 -8217532 + B3 SINE B2 2 202 -14 3 1451 283 45 0 43 chr11 113626324 113626371 -8217485 + (TAA)n Simple_repeat Simple_repeat 1 45 0 3 1451 1139 223 88 84 chr11 113626371 113626533 -8217323 + MTE2a LTR MaLR 176 343 -36 3 1451 534 254 42 0 chr11 113626556 113626674 -8217182 - B1_Mur1 SINE Alu 0 149 27 3 1451 736 229 0 0 chr11 113626774 113626914 -8216942 + B1F SINE Alu 10 149 0 3 1451 235 241 95 95 chr11 113626785 113626932 -8216924 - YREP_Mm Unknown Unknown -1516 296 150 3 1451 1168 69 0 0 chr11 113626962 113627107 -8216749 - B1_Mus2 SINE Alu -1 146 2 3 1451 224 288 29 29 chr11 113627226 113627294 -8216562 - ID SINE ID -155 69 2 3 1451 469 292 7 34 chr11 113627304 113627453 -8216403 - ID_B1 SINE B4 0 224 80 3 1451 393 330 90 57 chr11 113627568 113627812 -8216044 + Charlie8 DNA MER1_type 79 330 -2098 3 1451 195 42 0 0 chr11 113627864 113627888 -8215968 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 3 1451 464 302 102 51 chr11 113629240 113629495 -8214361 - MLT1C LTR MaLR -12 455 188 3 1451 748 290 19 10 chr11 113629528 113629737 -8214119 - B4 SINE B4 -12 280 70 3 1451 316 323 181 0 chr11 113629953 113630108 -8213748 + Cheshire DNA MER1_type 47 229 -2191 3 1451 971 223 68 40 chr11 113630929 113631177 -8212679 - MTD LTR MaLR -162 257 3 3 1451 541 231 58 22 chr11 113631387 113631524 -8212332 - B4 SINE B4 -150 142 1 3 1451 502 250 35 0 chr11 113631529 113631645 -8212211 - PB1D9 SINE Alu 0 120 1 3 1451 495 182 192 32 chr11 113631724 113631849 -8212007 + B1F2 SINE Alu 2 146 -3 3 1451 1942 223 83 22 chr11 113632024 113632520 -8211336 + RLTR11A2 LTR ERVK 2 527 0 3 1451 250 366 69 6 chr11 113633025 113633198 -8210658 + Tigger13a DNA MER2_type 11 194 -577 3 1451 1663 52 0 0 chr11 113633284 113633477 -8210379 + B2_Mm1a SINE B2 1 193 0 3 1451 1270 92 32 21 chr11 113633557 113633713 -8210143 + B2_Mm2 SINE B2 2 158 -37 3 1451 270 81 0 0 chr11 113633713 113633750 -8210106 + (TAAG)n Simple_repeat Simple_repeat 3 39 0 3 1451 1270 92 32 21 chr11 113633750 113633782 -8210074 + B2_Mm2 SINE B2 159 192 -3 3 1451 1199 54 0 13 chr11 113633908 113634057 -8209799 + B1_Mm SINE Alu 1 147 0 3 1451 326 111 0 45 chr11 113634057 113634123 -8209733 + A-rich Low_complexity Low_complexity 1 63 0 3 1451 1357 35 0 6 chr11 113634265 113634440 -8209416 + B2_Mm2 SINE B2 2 175 -20 3 1451 836 108 8 0 chr11 113634444 113634574 -8209282 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 3 1451 341 141 47 0 chr11 113634997 113635082 -8208774 + GA-rich Low_complexity Low_complexity 3 91 0 3 1451 222 312 25 12 chr11 113635106 113635187 -8208669 + RSINE1 SINE B4 11 92 -73 3 1451 360 0 0 0 chr11 113635231 113635271 -8208585 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1451 651 231 0 37 chr11 113635326 113635461 -8208395 - B1_Mur1 SINE Alu -19 130 1 3 1451 739 257 0 0 chr11 113635474 113635622 -8208234 + B1F SINE Alu 1 148 -1 3 1451 233 267 51 110 chr11 113635629 113635747 -8208109 + MT2B2 LTR ERVL 177 287 -297 3 1451 1007 56 0 21 chr11 113635721 113635866 -8207990 + B1_Mus2 SINE Alu 6 147 0 3 1451 231 36 0 0 chr11 113635866 113635894 -8207962 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1451 908 233 15 19 chr11 113635905 113636111 -8207745 + B3 SINE B2 6 210 -6 3 1451 368 328 9 80 chr11 113636188 113636400 -8207456 + Tigger13a DNA MER2_type 494 690 -81 3 1451 395 248 88 35 chr11 113636394 113636507 -8207349 - B1_Mur1 SINE Alu 0 149 31 3 1451 342 234 65 0 chr11 113636534 113636611 -8207245 + PB1D7 SINE Alu 23 104 -16 3 1451 202 222 18 18 chr11 113636762 113636817 -8207039 + L4 LINE RTE 1097 1151 -878 3 1451 200 277 46 73 chr11 113636817 113636868 -8206988 + MIR SINE MIR 34 136 -126 3 1451 568 186 76 35 chr11 113636969 113637000 -8206856 - B3A SINE B2 0 198 166 3 1451 606 113 0 0 chr11 113637000 113637097 -8206759 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1451 568 186 76 35 chr11 113637097 113637210 -8206646 - B3A SINE B2 -33 165 48 3 1451 267 269 64 0 chr11 113637332 113637410 -8206446 - ID4_ SINE ID 0 83 1 3 1451 426 39 0 0 chr11 113637466 113637518 -8206338 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1451 324 0 0 0 chr11 113639273 113639309 -8204547 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1451 477 0 0 0 chr11 113639358 113639411 -8204445 + (GGCTG)n Simple_repeat Simple_repeat 1 53 0 3 1452 1182 82 0 0 chr11 113639890 113640037 -8203819 - B1_Mm SINE Alu 0 147 1 3 1452 344 175 0 0 chr11 113640621 113640678 -8203178 + RMER13B LTR ERVK 5 61 -847 3 1452 723 190 33 49 chr11 113640676 113640859 -8202997 + RMER13B LTR ERVK 727 906 -2 3 1452 23 0 0 0 chr11 113641428 113641451 -8202405 + AT_rich Low_complexity Low_complexity 1 23 0 3 1452 1174 145 30 77 chr11 113642570 113642868 -8200988 + RMER17C LTR ERVK 1 284 -126 3 1452 951 96 0 0 chr11 113642873 113643008 -8200848 + B1_Mus2 SINE Alu 2 136 -11 3 1452 399 21 0 0 chr11 113643008 113643056 -8200800 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 3 1452 555 339 0 53 chr11 113643066 113643256 -8200600 + B3A SINE B2 9 188 -10 3 1452 1365 119 10 0 chr11 113645495 113645688 -8198168 + B2_Mm2 SINE B2 1 195 0 3 1452 342 0 0 0 chr11 113646187 113646225 -8197631 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1452 235 181 14 14 chr11 113647579 113647652 -8196204 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1452 579 233 36 72 chr11 113648859 113649053 -8194803 + RMER10B LTR ERVL 212 398 0 3 1452 1190 69 0 0 chr11 113649250 113649395 -8194461 - B1_Mus2 SINE Alu 0 147 3 3 1452 343 314 79 16 chr11 113650044 113650170 -8193686 + Helitron3Na_Mam RC Helitron 31 164 -322 3 1452 233 385 0 0 chr11 113650420 113650503 -8193353 + ID2 SINE ID 1 83 0 3 1452 616 13 0 0 chr11 113651060 113651136 -8192720 - B1_Mm SINE Alu -41 106 31 3 1452 412 210 132 15 chr11 113651374 113651512 -8192344 - ID_B1 SINE B4 -133 159 13 3 1452 277 234 16 0 chr11 113651504 113651568 -8192288 - ID4_ SINE ID -6 77 13 3 1452 261 250 16 0 chr11 113651560 113651624 -8192232 - ID4_ SINE ID -6 77 13 3 1452 261 250 16 0 chr11 113651616 113651680 -8192176 - ID4_ SINE ID -6 77 13 3 1452 240 237 17 17 chr11 113651677 113651737 -8192119 - ID4_ SINE ID -11 72 13 3 1452 241 266 16 0 chr11 113651729 113651793 -8192063 - ID4_ SINE ID -6 77 13 3 1452 242 250 15 15 chr11 113651785 113651850 -8192006 - ID4_ SINE ID -6 77 13 3 1452 242 250 15 15 chr11 113651842 113651907 -8191949 - ID4_ SINE ID -6 77 13 3 1452 277 234 16 0 chr11 113651899 113651963 -8191893 - ID4_ SINE ID -6 77 13 3 1452 277 234 16 0 chr11 113651955 113652019 -8191837 - ID4_ SINE ID -6 77 13 3 1452 261 250 16 0 chr11 113652011 113652075 -8191781 - ID4_ SINE ID -6 77 13 3 1452 261 250 16 0 chr11 113652067 113652131 -8191725 - ID4_ SINE ID -6 77 13 3 1452 266 222 32 0 chr11 113652123 113652186 -8191670 - ID4_ SINE ID -6 77 13 3 1452 277 234 16 0 chr11 113652178 113652242 -8191614 - ID4_ SINE ID -6 77 13 3 1452 252 122 0 0 chr11 113652540 113652581 -8191275 + (GGA)n Simple_repeat Simple_repeat 1 41 0 3 1452 424 179 0 0 chr11 113653645 113653729 -8190127 + L1Md_F2 LINE L1 6499 6582 0 3 1452 528 296 89 26 chr11 113653855 113654046 -8189810 - ID_B1 SINE B4 -8 216 14 3 1452 344 290 0 127 chr11 113655337 113655495 -8188361 + MER117 DNA MER1_type 57 194 -3 3 1452 189 74 0 0 chr11 113655626 113655653 -8188203 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 1452 340 261 42 0 chr11 113656710 113656805 -8187051 + B1F1 SINE Alu 17 117 0 3 1452 226 239 44 22 chr11 113656937 113657074 -8186782 + (TA)n Simple_repeat Simple_repeat 1 140 0 3 1452 351 96 0 0 chr11 113657492 113657544 -8186312 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1452 806 251 45 29 chr11 113657582 113657824 -8186032 - B4A SINE B4 -46 246 1 3 1452 772 249 4 78 chr11 113657885 113658116 -8185740 - B3 SINE B2 -1 215 2 3 1452 295 212 6 0 chr11 113658129 113658215 -8185641 - B1F SINE Alu -6 143 28 3 1452 226 212 96 36 chr11 113658593 113658676 -8185180 - MIRm SINE MIR -125 151 64 3 1452 956 223 17 204 chr11 113659794 113659882 -8183974 + B4 SINE B4 5 80 -212 4 1452 234 0 0 0 chr11 113659882 113659908 -8183948 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1452 956 223 17 204 chr11 113659908 113659930 -8183926 + B4 SINE B4 81 81 -211 4 1452 1177 49 0 7 chr11 113659930 113660073 -8183783 - B1_Mus1 SINE Alu -5 143 2 4 1452 956 223 17 204 chr11 113660073 113660305 -8183551 + B4 SINE B4 81 284 -8 4 1452 858 266 146 4 chr11 113660792 113661045 -8182811 - B4A SINE B4 -3 289 1 4 1452 1234 48 0 0 chr11 113661113 113661259 -8182597 - B1_Mm SINE Alu 0 147 2 4 1452 328 89 0 0 chr11 113663596 113663641 -8180215 + B1_Mus2 SINE Alu 96 140 -7 4 1452 346 278 26 44 chr11 113664010 113664123 -8179733 + B1F SINE Alu 5 115 -34 4 1452 248 253 12 25 chr11 113664215 113664296 -8179560 + GA-rich Low_complexity Low_complexity 4 83 0 4 1452 229 51 51 0 chr11 113665008 113665047 -8178809 + (CCCCAG)n Simple_repeat Simple_repeat 1 41 0 4 1452 351 101 38 0 chr11 113665328 113665407 -8178449 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1452 23 33 0 0 chr11 113665518 113665548 -8178308 + AT_rich Low_complexity Low_complexity 1 30 0 4 1452 699 158 0 0 chr11 113665548 113665675 -8178181 + CT-rich Low_complexity Low_complexity 2 128 0 4 1452 337 182 0 15 chr11 113665676 113665743 -8178113 - B1_Mur4 SINE Alu -83 67 2 4 1452 279 300 0 83 chr11 113665743 113665786 -8178070 - B4A SINE B4 -208 84 51 4 1452 695 274 51 6 chr11 113665814 113665990 -8177866 - B3 SINE B2 -27 189 6 4 1452 726 281 106 0 chr11 113665997 113666196 -8177660 - ID_B1 SINE B4 -3 221 2 4 1452 315 0 0 0 chr11 113666696 113666731 -8177125 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1452 207 0 0 0 chr11 113666731 113666753 -8177103 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1452 1198 75 0 0 chr11 113668955 113669102 -8174754 + B1_Mus2 SINE Alu 1 147 0 4 1452 265 238 35 35 chr11 113669188 113669199 -8174657 - ID_B1 SINE B4 -128 96 10 4 1452 306 219 0 40 chr11 113669199 113669275 -8174581 - ID4 SINE ID -1 82 10 4 1452 227 303 94 47 chr11 113669249 113669377 -8174479 - MER2B DNA MER2_type -85 251 118 4 1452 259 306 28 0 chr11 113669456 113669528 -8174328 - ID_B1 SINE B4 -2 222 149 4 1452 661 212 135 21 chr11 113669547 113669740 -8174116 - B3 SINE B2 0 216 2 4 1452 243 0 0 0 chr11 113669885 113669912 -8173944 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1452 1234 58 11 11 chr11 113670230 113670406 -8173450 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 4 1452 323 190 0 71 chr11 113670406 113670484 -8173372 - ID_B1 SINE B4 -6 218 146 4 1452 682 45 0 0 chr11 113670408 113670496 -8173360 - B1_Mm SINE Alu -6 141 54 4 1452 246 173 37 37 chr11 113670451 113670505 -8173351 - RLTR25A LTR ERVK -531 572 519 4 1452 539 214 187 102 chr11 113670515 113670674 -8173182 - B3 SINE B2 0 216 41 4 1452 1062 92 42 0 chr11 113670674 113670816 -8173040 - B1_Mus1 SINE Alu 0 148 1 4 1452 539 214 187 102 chr11 113670816 113670843 -8173013 - B3 SINE B2 -176 40 14 4 1452 230 216 31 133 chr11 113670972 113671100 -8172756 + L2c LINE L2 3019 3133 -254 4 1452 201 147 0 0 chr11 113671438 113671472 -8172384 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1452 423 253 155 83 chr11 113673689 113673870 -8169986 + B2_Mm2 SINE B2 1 194 -1 4 1452 963 211 75 0 chr11 113673873 113674072 -8169784 + B3 SINE B2 1 214 -2 4 1452 209 325 48 0 chr11 113674378 113674461 -8169395 + MIRm SINE MIR 157 243 -33 4 1452 1540 38 43 0 chr11 113674528 113674714 -8169142 - B2_Mm2 SINE B2 0 195 2 4 1452 867 25 0 99 chr11 113674714 113674845 -8169011 - B2_Mm1a SINE B2 -75 118 1 4 1452 1411 75 21 5 chr11 113675087 113675274 -8168582 - B2_Mm2 SINE B2 -5 190 1 4 1452 558 0 0 0 chr11 113675277 113675339 -8168517 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1452 711 279 48 9 chr11 113675450 113675660 -8168196 - ID_B1 SINE B4 -5 219 2 4 1452 1219 80 0 17 chr11 113675861 113676039 -8167817 - B2_Mm1a SINE B2 -18 175 1 4 1452 919 69 7 7 chr11 113676153 113676299 -8167557 + (TG)n Simple_repeat Simple_repeat 2 147 0 4 1452 304 283 56 35 chr11 113676465 113676608 -8167248 - L1MA9 LINE L1 -123 6189 6044 4 1452 635 196 9 0 chr11 113676741 113676853 -8167003 - PB1D9 SINE Alu -7 113 1 4 1452 225 253 103 0 chr11 113676853 113676940 -8166916 - L1MA9 LINE L1 -255 6036 5941 4 1452 317 43 0 21 chr11 113676959 113677007 -8166849 + (TTAA)n Simple_repeat Simple_repeat 4 50 0 4 1452 789 65 0 0 chr11 113677022 113677130 -8166726 - B2_Mm2 SINE B2 -86 109 2 4 1452 257 246 7 141 chr11 113677137 113677279 -8166577 - L1MA6 LINE L1 -327 5973 5851 4 1452 624 290 18 20 chr11 113677368 113677412 -8166444 + ID_B1 SINE B4 42 129 -163 4 1452 271 394 0 0 chr11 113677412 113677506 -8166350 + PB1D10 SINE Alu 1 94 -23 4 1452 624 290 18 20 chr11 113677506 113677550 -8166306 + ID_B1 SINE B4 130 222 -70 4 1452 1097 221 3 62 chr11 113677562 113677600 -8166256 + L1M3 LINE L1 5463 5500 -689 4 1452 1249 94 15 50 chr11 113677600 113677802 -8166054 + B2_Mm2 SINE B2 1 195 0 4 1452 1097 221 3 62 chr11 113677802 113678052 -8165804 + L1M3 LINE L1 5501 5734 -455 4 1452 491 239 67 7 chr11 113678052 113678187 -8165669 + ID_B1 SINE B4 80 222 -2 4 1452 462 264 79 8 chr11 113678661 113678787 -8165069 - ID_B1 SINE B4 0 224 90 4 1452 369 255 202 96 chr11 113678812 113678850 -8165006 - B3A SINE B2 -1 197 165 4 1452 333 47 0 0 chr11 113678850 113678893 -8164963 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1452 369 255 202 96 chr11 113678893 113679032 -8164824 - B3A SINE B2 -34 164 1 4 1452 260 345 0 66 chr11 113679036 113679157 -8164699 - PB1D10 SINE Alu -2 115 3 4 1452 571 154 17 0 chr11 113679170 113679287 -8164569 + (TCCA)n Simple_repeat Simple_repeat 4 122 0 4 1452 387 141 0 0 chr11 113679366 113679430 -8164426 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 4 1452 271 253 24 107 chr11 113679441 113679525 -8164331 - PB1D10 SINE Alu -28 89 13 4 1452 24 0 0 0 chr11 113679548 113679572 -8164284 + AT_rich Low_complexity Low_complexity 1 24 0 4 1452 717 165 0 0 chr11 113679575 113679690 -8164166 - B1_Mur1 SINE Alu -25 124 10 4 1452 294 303 0 105 chr11 113679585 113679718 -8164138 - MT2B LTR ERVL -337 264 146 4 1452 244 257 114 0 chr11 113679730 113679800 -8164056 - MER58B DNA MER1_type -15 326 249 4 1452 313 52 0 4 chr11 113679814 113679874 -8163982 - B1_Mur3 SINE Alu 0 149 89 4 1452 788 278 71 9 chr11 113680032 113680243 -8163613 - ID_B1 SINE B4 0 224 1 4 1452 552 154 256 33 chr11 113680533 113680654 -8163202 - B1_Mus1 SINE Alu 0 148 1 4 1452 216 97 0 0 chr11 113680825 113680856 -8163000 + (CCA)n Simple_repeat Simple_repeat 3 33 0 4 1452 501 204 15 8 chr11 113680870 113681003 -8162853 + CT-rich Low_complexity Low_complexity 2 135 0 4 1452 859 222 73 50 chr11 113681003 113681221 -8162635 - ID_B1 SINE B4 0 224 2 4 1452 713 196 42 0 chr11 113682232 113682375 -8161481 - ID_B1 SINE B4 0 224 76 4 1452 1437 197 138 16 chr11 113684213 113684584 -8159272 + MTD LTR MaLR 4 419 0 4 1452 494 336 33 66 chr11 113685056 113685330 -8158526 - Charlie22a DNA MER1_type -56 435 171 4 1452 347 279 113 42 chr11 113686049 113686191 -8157665 + L2a LINE L2 3275 3426 0 4 1452 184 309 146 7 chr11 113686632 113686769 -8157087 - MIR3 SINE MIR -29 179 24 4 1452 343 323 110 48 chr11 113688491 113688826 -8155030 + ORR1E LTR MaLR 4 359 0 4 1452 323 328 112 51 chr11 113690287 113690483 -8153373 - MER20 DNA MER1_type -11 208 1 4 1452 715 261 19 0 chr11 113690785 113690946 -8152910 - ID_B1 SINE B4 -60 164 1 4 1452 258 246 18 0 chr11 113691910 113691967 -8151889 - PB1D7 SINE Alu -61 59 2 4 1452 869 286 20 41 chr11 113692833 113693125 -8150731 + MER115 DNA Tip100 404 689 -4 4 1452 216 0 0 0 chr11 113693308 113693332 -8150524 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1452 505 299 95 0 chr11 113694804 113694951 -8148905 - ID_B1 SINE B4 -12 212 52 4 1452 432 0 0 0 chr11 113694966 113695014 -8148842 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 4 1452 336 64 0 0 chr11 113695060 113695107 -8148749 + (TTA)n Simple_repeat Simple_repeat 2 48 0 4 1452 263 28 28 0 chr11 113695140 113695176 -8148680 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 1452 392 111 18 44 chr11 113695265 113695378 -8148478 + (TTA)n Simple_repeat Simple_repeat 2 111 0 4 1452 499 294 12 56 chr11 113695394 113695556 -8148300 - RSINE1 SINE B4 -4 161 7 4 1452 258 270 40 0 chr11 113695570 113695644 -8148212 - PB1D9 SINE Alu -8 112 36 4 1452 743 164 0 14 chr11 113697419 113697567 -8146289 + GA-rich Low_complexity Low_complexity 3 148 0 4 1452 251 302 11 23 chr11 113698432 113698520 -8145336 + MIRm SINE MIR 60 146 -130 4 1452 201 74 0 0 chr11 113698640 113698667 -8145189 + (CG)n Simple_repeat Simple_repeat 2 28 0 4 1452 291 306 95 71 chr11 113698673 113698731 -8145125 - B4 SINE B4 0 292 130 4 1452 598 199 37 0 chr11 113698731 113698867 -8144989 - B1_Mur1 SINE Alu 0 149 9 4 1452 928 211 57 45 chr11 113698852 113698961 -8144895 - B4 SINE B4 -42 250 145 4 1452 2180 144 14 6 chr11 113698961 113699317 -8144539 - RLTR15 LTR ERVK 0 359 1 4 1452 928 206 57 33 chr11 113699317 113699454 -8144402 - B4 SINE B4 -148 144 7 4 1452 559 168 6 106 chr11 113700303 113700435 -8143421 - URR1B DNA MER1_type 0 225 108 4 1452 189 0 0 0 chr11 113700435 113700456 -8143400 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1452 559 218 58 73 chr11 113700456 113700544 -8143312 - URR1B DNA MER1_type -118 107 1 4 1452 271 273 38 57 chr11 113701178 113701283 -8142573 + B1F SINE Alu 37 139 -10 4 1452 1124 271 97 0 chr11 113701381 113701556 -8142300 + MTE2b LTR MaLR 17 202 -177 4 1452 385 60 29 29 chr11 113701556 113701625 -8142231 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 4 1452 1124 271 97 0 chr11 113701625 113701770 -8142086 + MTE2b LTR MaLR 203 367 -12 4 1452 291 287 29 19 chr11 113702005 113702108 -8141748 - MIR3 SINE MIR -12 196 93 4 1452 214 338 44 0 chr11 113702462 113702530 -8141326 + B4 SINE B4 69 139 -153 5 1452 335 324 29 0 chr11 113702481 113702586 -8141270 + PB1D7 SINE Alu 6 113 -7 5 1452 379 321 9 9 chr11 113702600 113702713 -8141143 + PB1D7 SINE Alu 6 118 -2 5 1452 408 208 32 0 chr11 113702713 113702941 -8140915 + (CCAA)n Simple_repeat Simple_repeat 1 235 0 5 1452 614 164 22 29 chr11 113702959 113703272 -8140584 + (CCAA)n Simple_repeat Simple_repeat 1 310 0 5 1452 329 321 53 47 chr11 113704706 113704781 -8139075 - MER45A DNA Tip100 0 178 108 5 1452 1136 62 0 40 chr11 113704781 113704933 -8138923 + B1_Mus1 SINE Alu 3 148 0 5 1452 329 321 53 47 chr11 113704933 113705027 -8138829 - MER45A DNA Tip100 -71 107 8 5 1452 249 278 14 5 chr11 113705027 113705119 -8138737 - MIRc SINE MIR -58 150 66 5 1452 26 50 0 0 chr11 113705832 113705872 -8137984 + AT_rich Low_complexity Low_complexity 1 40 0 5 1452 483 18 0 0 chr11 113706400 113706456 -8137400 + (CCTG)n Simple_repeat Simple_repeat 2 57 0 5 1452 1306 22 0 37 chr11 113706456 113706642 -8137214 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1452 344 119 0 17 chr11 113706642 113706702 -8137154 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 5 1452 290 277 161 96 chr11 113706761 113707021 -8136835 - B4A SINE B4 -11 281 5 5 1452 21 0 0 0 chr11 113707098 113707119 -8136737 + AT_rich Low_complexity Low_complexity 1 21 0 5 1452 639 256 54 22 chr11 113707526 113707710 -8136146 - ID_B1 SINE B4 -6 218 29 5 1452 322 339 55 8 chr11 113707766 113707894 -8135962 + L1MC5 LINE L1 6713 6846 -1196 5 1452 269 290 14 0 chr11 113707926 113707995 -8135861 - ID4_ SINE ID -12 71 2 5 1452 279 0 0 0 chr11 113708060 113708091 -8135765 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1452 1315 207 134 43 chr11 113708111 113708240 -8135616 + MTD LTR MaLR 13 129 -290 5 1452 486 0 0 0 chr11 113708240 113708294 -8135562 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1452 1315 207 134 43 chr11 113708294 113708537 -8135319 + MTD LTR MaLR 130 418 -1 5 1452 309 291 27 9 chr11 113708537 113708640 -8135216 - B1F SINE Alu -43 106 2 5 1452 210 318 11 56 chr11 113708570 113708660 -8135196 - B4A SINE B4 -136 156 71 5 1452 309 313 0 73 chr11 113708674 113708853 -8135003 + L1MC5 LINE L1 6793 6958 -1003 5 1452 375 135 56 0 chr11 113709055 113709144 -8134712 + CT-rich Low_complexity Low_complexity 3 96 0 5 1452 536 246 58 24 chr11 113709363 113709532 -8134324 + L1MC5 LINE L1 7306 7475 -486 5 1452 1084 84 6 22 chr11 113709532 113709715 -8134141 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1452 536 246 58 24 chr11 113709715 113709753 -8134103 + L1MC5 LINE L1 7476 7519 -442 5 1452 644 225 99 0 chr11 113710300 113710442 -8133414 + ID_B1 SINE B4 2 157 -67 5 1452 526 327 92 10 chr11 113711527 113711734 -8132122 + MLT1B LTR MaLR 2 225 -165 5 1452 1417 65 16 21 chr11 113712513 113712701 -8131155 + B2_Mm2 SINE B2 2 188 -7 5 1452 297 259 52 26 chr11 113713324 113713439 -8130417 + MER3 DNA MER1_type 46 163 -46 5 1452 779 258 20 35 chr11 113713489 113713690 -8130166 - ID_B1 SINE B4 -26 198 1 5 1452 457 304 94 6 chr11 113714101 113714260 -8129596 - MER5A DNA MER1_type -11 178 6 5 1452 978 219 5 56 chr11 113714485 113714698 -8129158 - B3 SINE B2 -14 202 1 5 1452 23 0 0 0 chr11 113714706 113714729 -8129127 + AT_rich Low_complexity Low_complexity 1 23 0 5 1452 449 257 19 9 chr11 113714730 113714836 -8129020 - RSINE1 SINE B4 -2 163 57 5 1452 355 283 11 11 chr11 113714979 113715072 -8128784 + RMER30 DNA MER1_type 9 101 -101 5 1452 263 237 168 40 chr11 113715099 113715200 -8128656 + RMER30 DNA MER1_type 87 200 -2 5 1452 348 277 9 38 chr11 113715906 113715918 -8127938 - PB1D10 SINE Alu -1 116 106 5 1452 234 0 0 0 chr11 113715918 113715944 -8127912 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1452 270 0 0 0 chr11 113715945 113715975 -8127881 + (TTA)n Simple_repeat Simple_repeat 3 32 0 5 1452 348 273 122 39 chr11 113715975 113716082 -8127774 - PB1D10 SINE Alu -15 112 1 5 1452 180 0 0 0 chr11 113716206 113716226 -8127630 + (CCCCAG)n Simple_repeat Simple_repeat 5 24 0 5 1452 213 139 0 0 chr11 113716359 113716402 -8127454 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1452 760 223 45 0 chr11 113716719 113716876 -8126980 - RSINE1 SINE B4 0 165 2 5 1452 279 0 0 0 chr11 113716887 113716918 -8126938 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 5 1452 885 121 28 14 chr11 113716918 113717050 -8126806 - B1_Mus2 SINE Alu -13 134 3 5 1452 468 329 81 12 chr11 113717051 113717223 -8126633 - B4A SINE B4 -103 189 6 5 1452 358 268 24 118 chr11 113717234 113717361 -8126495 - PB1D10 SINE Alu -2 115 1 5 1452 644 238 72 13 chr11 113718190 113718343 -8125513 - RSINE1 SINE B4 0 165 4 5 1452 227 312 52 31 chr11 113718650 113718675 -8125181 - B1F1 SINE Alu -51 98 1 5 1452 275 268 28 0 chr11 113718675 113718746 -8125110 - ID_B1 SINE B4 -70 154 82 5 1452 432 255 36 45 chr11 113719290 113719401 -8124455 - ID_B1 SINE B4 -23 201 92 5 1452 2051 289 70 52 chr11 113719444 113720051 -8123805 + Lx8 LINE L1 6118 6739 -734 5 1452 189 0 0 0 chr11 113720051 113720072 -8123784 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1452 2051 289 70 52 chr11 113720072 113720272 -8123584 + Lx8 LINE L1 6740 6939 -534 5 1452 605 268 296 18 chr11 113720305 113720590 -8123266 + Lx8 LINE L1 7109 7472 -1 5 1452 327 221 329 27 chr11 113720748 113720897 -8122959 + RMER15 LTR ERVL 347 540 -35 5 1452 428 332 86 62 chr11 113721556 113721893 -8121963 - L5 LINE RTE 0 2265 1921 5 1452 260 290 109 61 chr11 113722330 113722495 -8121361 + MIR SINE MIR 86 258 -4 5 1452 748 157 44 7 chr11 113722590 113722860 -8120996 + (TCCA)n Simple_repeat Simple_repeat 1 279 0 5 1452 688 182 80 66 chr11 113723596 113723808 -8120048 - B3 SINE B2 -1 215 1 5 1452 257 258 16 0 chr11 113723895 113723957 -8119899 + Cheshire DNA MER1_type 2358 2420 0 5 1452 464 219 104 16 chr11 113724000 113724125 -8119731 + RSINE1 SINE B4 1 136 -29 5 1452 273 98 0 0 chr11 113724131 113724172 -8119684 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 5 1452 372 171 0 0 chr11 113724188 113724270 -8119586 + (CAT)n Simple_repeat Simple_repeat 3 84 0 5 1452 1396 257 59 14 chr11 113724284 113724791 -8119065 + L1ME4a LINE L1 4891 5428 -905 5 1452 570 268 7 21 chr11 113724823 113724968 -8118888 + B3A SINE B2 28 170 -28 5 1452 540 42 0 0 chr11 113725003 113725074 -8118782 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1452 841 162 14 0 chr11 113725222 113725364 -8118492 - B1_Mur1 SINE Alu -5 144 1 5 1452 451 186 257 0 chr11 113725403 113725516 -8118340 + B1F SINE Alu 1 142 -7 5 1452 321 352 60 27 chr11 113725639 113725823 -8118033 + L1ME4a LINE L1 5664 5853 -271 5 1452 22 35 0 0 chr11 113726024 113726053 -8117803 + AT_rich Low_complexity Low_complexity 1 29 0 5 1452 185 250 30 45 chr11 113726297 113726364 -8117492 - MER5B DNA MER1_type -23 155 90 5 1452 425 179 131 82 chr11 113726428 113726550 -8117306 + B4A SINE B4 165 292 0 5 1452 441 271 0 0 chr11 113726550 113726694 -8117162 + (CA)n Simple_repeat Simple_repeat 1 144 0 5 1452 200 269 19 0 chr11 113727727 113727779 -8116077 + CT-rich Low_complexity Low_complexity 5 57 0 5 1452 342 277 154 32 chr11 113727834 113728080 -8115776 - B4A SINE B4 -15 277 2 5 1452 350 250 30 30 chr11 113728885 113728984 -8114872 + MER58B DNA MER1_type 217 315 -26 5 1452 228 35 0 0 chr11 113729975 113730004 -8113852 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5 1452 1154 62 0 0 chr11 113730358 113730503 -8113353 - B1_Mus2 SINE Alu -2 145 1 5 1452 294 292 62 97 chr11 113731415 113731559 -8112297 + ID_B1 SINE B4 54 192 -32 5 1452 665 201 11 28 chr11 113731616 113731765 -8112091 - RSINE1 SINE B4 0 292 2 5 1452 553 121 0 108 chr11 113731785 113731896 -8111960 + B1_Mus2 SINE Alu 43 141 -6 5 1452 287 65 43 0 chr11 113731897 113731943 -8111913 + B1_Mur4 SINE Alu 102 149 -1 5 1452 243 188 0 0 chr11 113731987 113732035 -8111821 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1452 562 234 89 12 chr11 113732035 113732204 -8111652 - B3A SINE B2 -16 182 1 5 1452 687 263 77 5 chr11 113732230 113732425 -8111431 - B3 SINE B2 -6 210 2 5 1452 594 245 32 13 chr11 113732428 113732585 -8111271 - ID_B1 SINE B4 -1 223 64 5 1452 218 254 18 0 chr11 113732638 113732693 -8111163 + CT-rich Low_complexity Low_complexity 1 56 0 5 1452 469 242 20 0 chr11 113732703 113732802 -8111054 - PB1D7 SINE Alu -2 118 18 5 1452 616 234 0 0 chr11 113733185 113733309 -8110547 + MER104 DNA Tc2 58 181 0 5 1452 244 234 152 0 chr11 113733571 113733657 -8110199 - B1F SINE Alu -16 104 5 5 1452 190 222 0 0 chr11 113735210 113735246 -8108610 - MIR SINE MIR -113 149 114 5 1452 440 229 103 28 chr11 113736802 113736990 -8106866 + ORR1E LTR MaLR 1 238 -132 5 1452 509 340 95 28 chr11 113737196 113737553 -8106303 + MLT1C LTR MaLR 65 445 -22 5 1452 297 330 5 54 chr11 113737752 113737873 -8105983 + polypyrimidine Low_complexity Low_complexity 65 177 0 5 1452 1600 26 0 0 chr11 113737873 113738065 -8105791 - B2_Mm1a SINE B2 -1 192 1 5 1452 306 266 20 41 chr11 113738065 113738171 -8105685 + CT-rich Low_complexity Low_complexity 1 103 0 5 1452 344 225 0 14 chr11 113739485 113739557 -8104299 + ID4_ SINE ID 1 71 -12 5 1452 711 182 44 0 chr11 113739602 113739739 -8104117 + B1_Mur1 SINE Alu 5 147 -2 5 1452 328 284 82 0 chr11 113739741 113739875 -8103981 + B1F1 SINE Alu 5 149 0 5 1452 354 312 0 9 chr11 113739886 113739999 -8103857 + PB1D10 SINE Alu 1 112 -5 5 1452 303 379 0 0 chr11 113741123 113741300 -8102556 + (TGGG)n Simple_repeat Simple_repeat 4 180 0 5 1452 260 360 0 17 chr11 113741351 113741526 -8102330 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 5 1452 245 305 0 0 chr11 113741612 113741694 -8102162 + (TGGG)n Simple_repeat Simple_repeat 3 84 0 5 1452 559 307 7 0 chr11 113742286 113742436 -8101420 + RSINE1 SINE B4 2 152 -13 5 1452 226 253 141 11 chr11 113743549 113743641 -8100215 + Charlie5 DNA MER1_type 20 121 -2503 5 1452 1236 230 19 47 chr11 113743652 113743971 -8099885 + Charlie5 DNA MER1_type 2239 2548 -76 5 1452 566 228 69 23 chr11 113744000 113744130 -8099726 + ID_B1 SINE B4 89 224 0 5 1452 294 29 0 0 chr11 113744285 113744320 -8099536 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1452 202 222 18 53 chr11 113744444 113744501 -8099355 + G-rich Low_complexity Low_complexity 6 60 0 6 1452 267 79 0 0 chr11 113744949 113744987 -8098869 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1452 255 286 0 67 chr11 113745000 113745090 -8098766 - PB1D9 SINE Alu -1 119 36 6 1452 915 226 25 5 chr11 113745084 113745284 -8098572 - ID_B1 SINE B4 -16 208 5 6 1452 224 258 48 0 chr11 113747136 113747198 -8096658 + (CGTG)n Simple_repeat Simple_repeat 3 67 0 6 1452 513 284 242 49 chr11 113747198 113747403 -8096453 - B4 SINE B4 0 292 34 6 1452 1024 87 86 12 chr11 113747403 113747566 -8096290 - B2_Mm2 SINE B2 -19 176 2 6 1452 513 284 242 49 chr11 113747566 113747604 -8096252 - B4 SINE B4 -259 33 2 6 1452 1172 49 0 0 chr11 113748412 113748556 -8095300 - B1_Mus1 SINE Alu 0 148 5 6 1452 360 0 0 0 chr11 113748557 113748597 -8095259 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1452 875 214 124 33 chr11 113748603 113748845 -8095011 - B4 SINE B4 -28 264 1 6 1452 3507 150 5 8 chr11 113749157 113749754 -8094102 - RLTR17 LTR ERVK 0 692 98 6 1452 261 257 29 0 chr11 113750699 113750769 -8093087 + MLT1A LTR MaLR 66 137 -237 6 1452 297 0 0 0 chr11 113750770 113750803 -8093053 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1452 238 357 81 16 chr11 113751214 113751399 -8092457 + MLT1A LTR MaLR 236 432 -12 6 1452 342 0 0 0 chr11 113752204 113752242 -8091614 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1452 864 158 0 0 chr11 113753178 113753324 -8090532 - B1_Mus2 SINE Alu -1 146 1 6 1452 369 353 0 7 chr11 113753331 113753468 -8090388 + MER5B DNA MER1_type 4 139 -39 6 1452 405 0 0 0 chr11 113753760 113753805 -8090051 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1452 510 46 0 0 chr11 113754140 113754205 -8089651 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1452 225 301 67 27 chr11 113755018 113755093 -8088763 - RMER30 DNA MER1_type -2 200 123 6 1452 420 275 38 84 chr11 113755190 113755399 -8088457 - MIRb SINE MIR -60 202 10 6 1452 324 0 0 0 chr11 113756957 113756993 -8086863 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1452 980 298 135 21 chr11 113757475 113758007 -8085849 + MLT1G3 LTR MaLR 1 593 -2 6 1452 199 281 18 0 chr11 113758184 113758241 -8085615 - MIRb SINE MIR -57 211 154 6 1452 497 289 20 51 chr11 113758764 113758961 -8084895 + B3 SINE B2 26 216 0 6 1452 340 292 6 17 chr11 113759146 113759327 -8084529 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1452 279 306 35 6 chr11 113759549 113759720 -8084136 + (TATG)n Simple_repeat Simple_repeat 1 176 0 6 1452 22 0 0 0 chr11 113760367 113760389 -8083467 + AT_rich Low_complexity Low_complexity 1 22 0 6 1452 219 294 217 2 chr11 113760995 113761243 -8082613 + L2a LINE L2 2818 3122 -304 6 1452 248 238 0 9 chr11 113761337 113761443 -8082413 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 6 1452 207 189 0 0 chr11 113761518 113761571 -8082285 + (TTATA)n Simple_repeat Simple_repeat 3 55 0 6 1452 295 321 0 26 chr11 113761692 113761807 -8082049 - PB1D10 SINE Alu -5 112 1 6 1452 280 57 36 36 chr11 113762702 113762757 -8081099 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1452 625 242 112 0 chr11 113763190 113763278 -8080578 - RMER30 DNA MER1_type -4 198 103 6 1452 198 71 0 0 chr11 113763278 113763306 -8080550 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1452 625 242 112 0 chr11 113763306 113763395 -8080461 - RMER30 DNA MER1_type -100 102 3 6 1452 385 341 17 34 chr11 113765418 113765597 -8078259 + HAL1-2a_MD LINE L1 2347 2522 -502 6 1452 416 254 26 78 chr11 113765676 113765868 -8077988 + HAL1-2a_MD LINE L1 2344 2525 -499 6 1452 463 283 7 11 chr11 113765870 113766320 -8077536 + (CACCAT)n Simple_repeat Simple_repeat 1 447 0 6 1452 1022 73 15 0 chr11 113766471 113766607 -8077249 + B1_Mus1 SINE Alu 1 138 -10 6 1452 398 220 17 39 chr11 113767091 113767271 -8076585 + G-rich Low_complexity Low_complexity 3 178 0 6 1452 324 356 56 75 chr11 113767289 113767541 -8076315 + L1MC LINE L1 5532 5778 -2104 6 1452 399 202 0 0 chr11 113767894 113767978 -8075878 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 1452 347 106 15 0 chr11 113768814 113768880 -8074976 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1452 212 288 16 0 chr11 113769088 113769155 -8074701 + MIR SINE MIR 84 158 -118 6 1453 318 312 10 0 chr11 113770715 113770811 -8073045 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1453 593 300 0 22 chr11 113770932 113771116 -8072740 - B3A SINE B2 -18 180 1 6 1453 530 221 9 0 chr11 113771556 113771669 -8072187 - PB1D9 SINE Alu -6 114 1 6 1453 447 224 153 22 chr11 113771893 113772030 -8071826 - RSINE1 SINE B4 0 165 11 6 1453 286 309 163 12 chr11 113772203 113772449 -8071407 + LTR85b LTR Gypsy? 233 515 -269 6 1453 1355 246 58 25 chr11 113772773 113773136 -8070720 - MTEb LTR MaLR -4 375 1 6 1453 769 278 73 68 chr11 113773141 113773496 -8070360 + MLT2B1 LTR ERVL 53 409 -111 6 1453 2038 108 12 12 chr11 113773497 113773834 -8070022 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1453 40070 23 4 2 chr11 113773844 113780276 -8063580 + IAPEz-int LTR ERVK 34 6479 -2 6 1453 2038 108 12 12 chr11 113780278 113780615 -8063241 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1453 378 0 0 0 chr11 113780665 113780707 -8063149 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1453 532 215 74 8 chr11 113781240 113781362 -8062494 + ORR1E LTR MaLR 2 131 -228 6 1453 1224 221 33 57 chr11 113781383 113781513 -8062343 - ORR1E LTR MaLR -31 328 204 6 1453 288 77 0 0 chr11 113781513 113781552 -8062304 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1453 924 51 0 0 chr11 113781554 113781672 -8062184 + (GGGAGA)n Simple_repeat Simple_repeat 3 120 0 6 1453 1224 221 33 57 chr11 113781672 113781874 -8061982 - ORR1E LTR MaLR -156 203 1 6 1453 272 288 76 29 chr11 113781914 113782070 -8061786 + ORR1E LTR MaLR 211 378 -1 6 1453 893 226 103 0 chr11 113782241 113782436 -8061420 + B3 SINE B2 1 215 -1 6 1453 1320 99 5 0 chr11 113782460 113782652 -8061204 + B2_Mm1t SINE B2 1 193 0 6 1453 825 65 0 0 chr11 113782699 113782807 -8061049 + (TG)n Simple_repeat Simple_repeat 2 109 0 6 1453 390 273 132 0 chr11 113783102 113783223 -8060633 - RSINE1 SINE B4 -28 137 1 6 1453 362 352 63 57 chr11 113783618 113783952 -8059904 - ORR1E LTR MaLR -13 346 11 6 1453 215 320 110 0 chr11 113784114 113784214 -8059642 - MIRc SINE MIR -90 178 68 6 1453 650 324 108 84 chr11 113784905 113785357 -8058499 - MLT1C LTR MaLR -3 464 2 6 1453 264 349 53 8 chr11 113785774 113785907 -8057949 + Cheshire DNA MER1_type 52 190 -2230 6 1453 2061 159 51 10 chr11 113786289 113786684 -8057172 - MTD LTR MaLR -8 411 1 6 1453 995 292 63 29 chr11 113787605 113787954 -8055902 + MTE2a LTR MaLR 10 370 -9 6 1453 186 133 0 0 chr11 113788034 113788064 -8055792 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1453 803 350 139 29 chr11 113788206 113788689 -8055167 + Tigger9b DNA MER2_type 89 624 0 6 1453 229 225 0 66 chr11 113789739 113789815 -8054041 - MIR SINE MIR -128 134 64 6 1453 403 321 31 0 chr11 113792100 113792259 -8051597 + CT-rich Low_complexity Low_complexity 3 166 0 6 1453 261 274 137 0 chr11 113792261 113792356 -8051500 - B1F1 SINE Alu -2 147 40 6 1453 186 229 0 0 chr11 113792862 113792897 -8050959 + MIRm SINE MIR 45 79 -197 6 1453 905 236 189 0 chr11 113793910 113794206 -8049650 + Lx9 LINE L1 7292 7643 -1 6 1453 1477 184 95 21 chr11 113794231 113794569 -8049287 - MTD LTR MaLR 0 419 57 6 1453 430 262 63 63 chr11 113794782 113794957 -8048899 + MER20 DNA MER1_type 40 214 -5 6 1453 233 317 45 82 chr11 113795561 113795671 -8048185 - MIRb SINE MIR -76 192 87 6 1453 254 29 29 0 chr11 113799408 113799443 -8044413 + (TGGGGG)n Simple_repeat Simple_repeat 3 38 0 6 1453 386 306 8 62 chr11 113799602 113799731 -8044125 + B4 SINE B4 171 292 0 6 1453 432 0 0 0 chr11 113800212 113800260 -8043596 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1453 306 0 0 0 chr11 113800260 113800294 -8043562 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1453 282 214 0 0 chr11 113800990 113801079 -8042777 + GA-rich Low_complexity Low_complexity 1 89 0 6 1453 266 0 29 0 chr11 113801104 113801138 -8042718 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1453 570 124 0 0 chr11 113801138 113801226 -8042630 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 1453 256 48 0 45 chr11 113801810 113801854 -8042002 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1453 401 304 66 89 chr11 113801871 113802142 -8041714 - B4A SINE B4 -27 265 1 6 1453 198 191 191 0 chr11 113802175 113802222 -8041634 + MIRc SINE MIR 90 145 -123 6 1453 474 222 28 69 chr11 113802352 113802497 -8041359 - B1F SINE Alu -1 148 10 6 1453 740 300 17 94 chr11 113802638 113802936 -8040920 + B4 SINE B4 1 275 -17 6 1453 229 250 0 0 chr11 113802945 113802993 -8040863 + (CATG)n Simple_repeat Simple_repeat 1 48 0 6 1453 420 20 0 0 chr11 113803011 113803060 -8040796 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1453 534 288 124 16 chr11 113804996 113805190 -8038666 + B4A SINE B4 22 236 -56 6 1453 189 320 151 8 chr11 113805477 113805603 -8038253 + L3 LINE CR1 25 168 -4321 6 1453 833 249 14 32 chr11 113807110 113807330 -8036526 + ID_B1 SINE B4 1 216 -8 6 1453 653 36 0 12 chr11 113807705 113807790 -8036066 + (GGA)n Simple_repeat Simple_repeat 2 85 0 6 1453 224 309 0 0 chr11 113808284 113808352 -8035504 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1453 22 0 0 0 chr11 113808835 113808857 -8034999 + AT_rich Low_complexity Low_complexity 1 22 0 6 1453 320 215 118 106 chr11 113808882 113809043 -8034813 - RSINE1 SINE B4 -1 164 2 6 1453 567 259 19 52 chr11 113809113 113809235 -8034621 + B3A SINE B2 5 122 -76 6 1453 2373 92 3 0 chr11 113809235 113809561 -8034295 + ORR1A2 LTR MaLR 1 327 0 7 1453 567 259 19 52 chr11 113809561 113809593 -8034263 + B3A SINE B2 123 153 -45 6 1453 297 0 0 0 chr11 113809597 113809630 -8034226 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1453 360 368 89 71 chr11 113809647 113810027 -8033829 + L1M5 LINE L1 4647 5033 -1113 7 1453 658 191 7 34 chr11 113810308 113810454 -8033402 + B1F2 SINE Alu 2 143 -6 7 1453 531 248 129 15 chr11 113810978 113811179 -8032677 - ID_B1 SINE B4 0 224 1 7 1453 280 325 56 48 chr11 113813414 113813540 -8030316 + MLT1C LTR MaLR 48 174 -293 7 1453 479 227 120 7 chr11 113813573 113813715 -8030141 - ORR1E LTR MaLR -1 369 212 7 1453 570 184 0 0 chr11 113813721 113813900 -8029956 + GA-rich Low_complexity Low_complexity 2 180 0 7 1453 308 168 0 21 chr11 113813915 113814012 -8029844 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 7 1453 561 114 0 0 chr11 113814013 113814118 -8029738 + (CA)n Simple_repeat Simple_repeat 2 106 0 7 1453 531 0 0 0 chr11 113814118 113814176 -8029680 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1453 843 237 0 0 chr11 113814176 113814349 -8029507 - ORR1E LTR MaLR -186 173 1 7 1453 397 218 0 11 chr11 113814349 113814437 -8029419 + PB1D10 SINE Alu 21 107 -10 7 1453 382 191 15 0 chr11 113814458 113814526 -8029330 + ID4 SINE ID 2 70 -13 7 1453 511 325 127 8 chr11 113815042 113815278 -8028578 + MLT1C LTR MaLR 204 467 0 7 1453 401 253 48 54 chr11 113816006 113816173 -8027683 + RLTR23 LTR ERV1 265 430 0 7 1453 3134 41 33 12 chr11 113816251 113816672 -8027184 + RLTR10C LTR ERVK 1 430 -6 7 1453 256 303 16 32 chr11 113816748 113816874 -8026982 + MIR SINE MIR 47 170 -92 7 1453 616 275 23 29 chr11 113818633 113818805 -8025051 + B3A SINE B2 1 171 -27 7 1453 285 304 199 4 chr11 113819132 113819363 -8024493 + L1MB5 LINE L1 5897 6172 -2 7 1453 252 0 0 0 chr11 113819691 113819719 -8024137 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1453 555 256 93 6 chr11 113820520 113820681 -8023175 - ID_B1 SINE B4 -7 217 43 7 1453 355 308 304 52 chr11 113820712 113821054 -8022802 + MLT1C LTR MaLR 76 473 -32 7 1453 243 170 21 0 chr11 113821250 113821297 -8022559 - ID SINE ID -173 51 4 7 1453 192 366 75 11 chr11 113823517 113823611 -8020245 + MIRm SINE MIR 27 126 -150 7 1453 393 22 0 0 chr11 113823704 113823750 -8020106 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 7 1453 1439 214 20 73 chr11 113824645 113825043 -8018813 - MTE2a LTR MaLR 0 379 3 7 1453 1200 203 108 26 chr11 113825276 113825620 -8018236 + ORR1D1 LTR MaLR 3 374 0 7 1453 281 397 79 0 chr11 113826440 113826654 -8017202 - MIRb SINE MIR -12 256 26 7 1453 877 344 40 15 chr11 113827739 113828137 -8015719 + MLT1C LTR MaLR 60 467 0 7 1453 486 274 114 92 chr11 113828614 113828978 -8014878 + MLT1A LTR MaLR 20 374 0 7 1453 1331 271 47 8 chr11 113829987 113830348 -8013508 + MTE2b LTR MaLR 1 375 -4 7 1453 991 181 223 23 chr11 113831034 113831344 -8012512 - ORR1D1 LTR MaLR 0 374 3 7 1453 1045 277 38 44 chr11 113832526 113832869 -8010987 + Lx9 LINE L1 7155 7495 -149 7 1453 197 65 0 31 chr11 113833339 113833371 -8010485 + (TCC)n Simple_repeat Simple_repeat 1 31 0 7 1453 239 365 43 25 chr11 113834360 113834523 -8009333 + MIR SINE MIR 18 183 -79 7 1453 217 227 0 0 chr11 113834618 113834662 -8009194 + (CATG)n Simple_repeat Simple_repeat 1 44 0 7 1453 283 342 0 12 chr11 113835056 113835135 -8008721 + RSINE1 SINE B4 3 80 -85 7 1453 1116 264 37 97 chr11 113835135 113835325 -8008531 - MTE2a LTR MaLR 0 379 181 7 1453 264 30 0 0 chr11 113835325 113835358 -8008498 + (CTTG)n Simple_repeat Simple_repeat 1 33 0 7 1453 1116 264 37 97 chr11 113835358 113835570 -8008286 - MTE2a LTR MaLR -199 180 1 7 1453 225 179 0 0 chr11 113835600 113835639 -8008217 + RSINE1 SINE B4 87 125 -40 7 1453 253 362 0 0 chr11 113835917 113835997 -8007859 - MER5A DNA MER1_type -107 82 3 7 1453 213 213 0 0 chr11 113836486 113836533 -8007323 + (CATG)n Simple_repeat Simple_repeat 1 47 0 7 1453 318 274 24 89 chr11 113836555 113836679 -8007177 - HAL1-3A_ME LINE L1 -840 2018 1903 7 1453 297 0 0 0 chr11 113837319 113837352 -8006504 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1453 369 189 0 131 chr11 113837798 113837826 -8006030 + ID_B1 SINE B4 119 222 0 7 1453 705 54 0 0 chr11 113837826 113837918 -8005938 + B1_Mus2 SINE Alu 56 147 0 7 1453 663 125 0 0 chr11 113837946 113838050 -8005806 + (GGA)n Simple_repeat Simple_repeat 2 105 0 7 1453 416 322 53 53 chr11 113838709 113838955 -8004901 + MLT1C LTR MaLR 216 461 -6 7 1453 238 302 103 34 chr11 113839006 113839181 -8004675 + L2 LINE L2 2477 2663 -756 7 1453 241 61 0 0 chr11 113839285 113839318 -8004538 - tRNA-Glu-GAG tRNA tRNA -38 37 5 7 1453 579 191 9 0 chr11 113839328 113839433 -8004423 - PB1D10 SINE Alu -3 114 9 7 1453 312 260 236 0 chr11 113839512 113839635 -8004221 + L1MB3 LINE L1 5613 5764 -407 7 1453 478 222 6 6 chr11 113839662 113839825 -8004031 + (CA)n Simple_repeat Simple_repeat 1 163 0 7 1453 430 247 8 0 chr11 113839836 113840093 -8003763 + (CA)n Simple_repeat Simple_repeat 1 259 0 7 1453 240 273 0 0 chr11 113840129 113840239 -8003617 + (CA)n Simple_repeat Simple_repeat 2 111 0 7 1453 948 332 33 18 chr11 113840239 113840634 -8003222 + L1MB3 LINE L1 5783 6183 0 7 1453 278 246 13 40 chr11 113841357 113841433 -8002423 + ORR1D1 LTR MaLR 1 74 -300 7 1453 508 325 73 4 chr11 113841727 113842002 -8001854 - L1MC3 LINE L1 -44 7741 7448 7 1453 288 0 0 0 chr11 113842048 113842080 -8001776 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1453 575 264 101 0 chr11 113842080 113842228 -8001628 - B3 SINE B2 -50 166 4 7 1453 270 0 0 0 chr11 113842278 113842308 -8001548 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1453 1373 228 62 20 chr11 113842483 113842836 -8001020 - ORR1D2 LTR MaLR 0 370 3 7 1453 227 267 93 0 chr11 113844523 113844598 -7999258 - Arthur1C DNA Tip100 -23 340 259 7 1453 210 105 0 0 chr11 113844603 113844641 -7999215 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1453 704 194 300 0 chr11 113844645 113844805 -7999051 + B3 SINE B2 1 208 -8 7 1453 249 33 0 0 chr11 113844806 113844836 -7999020 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1453 538 119 58 25 chr11 113845670 113845914 -7997942 + (TAGA)n Simple_repeat Simple_repeat 1 252 0 7 1453 218 336 85 15 chr11 113848277 113848407 -7995449 - MIR3 SINE MIR -58 150 12 7 1453 1167 238 70 88 chr11 113848518 113848891 -7994965 + MTE2a LTR MaLR 2 367 -12 7 1453 618 135 35 0 chr11 113850004 113850174 -7993682 + (CAGA)n Simple_repeat Simple_repeat 3 178 0 7 1453 350 48 0 0 chr11 113850174 113850216 -7993640 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1453 411 340 65 24 chr11 113850788 113851235 -7992621 - LTR33A_ LTR ERVL -1 519 10 7 1453 240 333 0 13 chr11 113853070 113853146 -7990710 - BC1_Mm scRNA scRNA -58 94 20 7 1453 283 254 40 40 chr11 113853086 113853160 -7990696 - ID SINE ID -141 83 10 7 1453 502 147 0 0 chr11 113853938 113854013 -7989843 + B3A SINE B2 1 75 -123 7 1453 367 315 69 0 chr11 113855202 113855376 -7988480 + MIRb SINE MIR 10 199 -77 7 1453 374 0 22 0 chr11 113855832 113855878 -7987978 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1453 582 217 101 0 chr11 113856944 113857082 -7986774 - B4 SINE B4 -132 160 9 7 1453 498 33 0 0 chr11 113857085 113857145 -7986711 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1453 470 267 15 15 chr11 113858705 113858842 -7985014 - MER96B DNA hAT -240 177 41 7 1453 261 0 0 0 chr11 113858854 113858883 -7984973 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1453 447 240 120 0 chr11 113858993 113859093 -7984763 + PB1D10 SINE Alu 1 112 -5 7 1453 349 109 15 15 chr11 113859094 113859159 -7984697 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 1453 571 198 119 0 chr11 113859838 113859964 -7983892 + B1_Mur2 SINE Alu 1 141 -8 7 1453 252 81 0 0 chr11 113860190 113860227 -7983629 - ID_B1 SINE B4 -8 216 180 7 1453 432 239 0 0 chr11 113860653 113860795 -7983061 + (TGG)n Simple_repeat Simple_repeat 3 144 0 7 1453 379 249 0 29 chr11 113860838 113861008 -7982848 + (ATGGTG)n Simple_repeat Simple_repeat 4 168 0 7 1453 195 364 63 9 chr11 113861066 113861177 -7982679 - MIRb SINE MIR -53 215 99 7 1453 1504 60 27 0 chr11 113862495 113862679 -7981177 - B2_Mm2 SINE B2 -6 189 1 7 1453 1078 240 85 91 chr11 113862753 113863144 -7980712 - MTD LTR MaLR 0 419 31 7 1453 2480 154 19 49 chr11 113863144 113863574 -7980282 - MTC LTR MaLR -4 417 1 7 1453 864 142 12 0 chr11 113863596 113863843 -7980013 + (TCTA)n Simple_repeat Simple_repeat 1 249 0 7 1453 1773 199 42 3 chr11 113864193 113864546 -7979310 + MTEa LTR MaLR 2 368 -11 7 1453 250 299 102 9 chr11 113865621 113865729 -7978127 + L2a LINE L2 3293 3410 -16 7 1453 777 289 43 149 chr11 113866648 113866949 -7976907 + B4 SINE B4 10 278 -14 7 1453 429 127 0 0 chr11 113866951 113867030 -7976826 + (CA)n Simple_repeat Simple_repeat 1 79 0 7 1453 390 277 62 49 chr11 113867219 113867363 -7976493 + MIR SINE MIR 95 240 -22 7 1453 180 310 68 11 chr11 113867389 113867477 -7976379 - L2c LINE L2 -52 3335 3243 7 1453 465 34 0 0 chr11 113868139 113868198 -7975658 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1453 731 249 48 32 chr11 113868198 113868385 -7975471 - B4 SINE B4 -23 269 80 7 1453 1136 198 65 115 chr11 113868400 113868834 -7975022 - Lx7 LINE L1 0 7696 7285 7 1453 300 314 12 0 chr11 113868888 113868974 -7974882 - B4A SINE B4 -204 88 2 7 1453 399 250 0 48 chr11 113870811 113870916 -7972940 + PB1D10 SINE Alu 17 116 -1 7 1453 443 302 42 30 chr11 113870999 113871166 -7972690 + MLT1B LTR MaLR 166 334 -56 7 1453 1002 115 0 0 chr11 113871320 113871863 -7971993 + (CA)n Simple_repeat Simple_repeat 1 543 0 7 1453 271 260 44 88 chr11 113874792 113874906 -7968950 + MIRc SINE MIR 32 140 -128 7 1453 1413 254 59 3 chr11 113875424 113875779 -7968077 + MTE2b LTR MaLR 1 375 -4 8 1453 222 319 32 72 chr11 113875802 113875927 -7967929 + MIR SINE MIR 27 146 -62 8 1453 477 129 8 41 chr11 113877019 113877140 -7966716 + CT-rich Low_complexity Low_complexity 3 119 0 8 1453 183 100 0 0 chr11 113877574 113877604 -7966252 + (CCCCAG)n Simple_repeat Simple_repeat 4 33 0 8 1453 235 337 0 0 chr11 113878904 113878987 -7964869 + MER5A DNA MER1_type 104 186 -3 8 1453 276 250 42 0 chr11 113878999 113879071 -7964785 + MER20 DNA MER1_type 4 78 -141 8 1453 396 0 0 0 chr11 113879645 113879689 -7964167 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1453 271 340 54 71 chr11 113879884 113880052 -7963804 + MIRb SINE MIR 35 199 -69 8 1453 236 353 0 38 chr11 113880261 113880367 -7963489 - MER113 DNA MER1_type -309 212 111 8 1453 340 307 117 70 chr11 113881402 113881675 -7962181 + B4A SINE B4 4 289 -3 8 1453 1086 193 51 9 chr11 113881791 113882005 -7961851 + URR1B DNA MER1_type 2 224 -1 8 1453 439 241 108 9 chr11 113882996 113883165 -7960691 - Tigger7 DNA MER2_type -154 185 1 8 1453 788 118 0 0 chr11 113884374 113884493 -7959363 + URR1B DNA MER1_type 107 225 0 8 1453 306 276 4 35 chr11 113884591 113884816 -7959040 + (CA)n Simple_repeat Simple_repeat 1 218 0 8 1453 297 0 0 0 chr11 113884869 113884902 -7958954 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1453 219 69 0 0 chr11 113885645 113885674 -7958182 + (GGGAA)n Simple_repeat Simple_repeat 5 33 0 8 1453 609 14 0 0 chr11 113886326 113886396 -7957460 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1453 374 220 69 20 chr11 113888280 113888382 -7955474 - B1_Mur1 SINE Alu -9 140 34 8 1453 283 241 0 0 chr11 113888421 113888475 -7955381 - PB1D9 SINE Alu -45 75 22 8 1453 983 199 36 18 chr11 113888484 113888704 -7955152 - ID_B1 SINE B4 0 224 1 8 1453 221 308 0 55 chr11 113888810 113888937 -7954919 + G-rich Low_complexity Low_complexity 5 124 0 8 1453 234 0 0 0 chr11 113889188 113889214 -7954642 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1453 244 265 0 0 chr11 113889351 113889400 -7954456 + G-rich Low_complexity Low_complexity 5 53 0 8 1453 463 333 5 53 chr11 113891699 113891905 -7951951 - MER20 DNA MER1_type 0 219 24 8 1453 220 265 125 19 chr11 113892009 113892113 -7951743 + L3 LINE CR1 4322 4436 -53 8 1453 1041 101 0 0 chr11 113892390 113892569 -7951287 + (GA)n Simple_repeat Simple_repeat 2 180 0 8 1453 264 77 0 0 chr11 113892569 113892608 -7951248 + (CAGAGA)n Simple_repeat Simple_repeat 1 39 0 8 1453 301 244 13 13 chr11 113892608 113892687 -7951169 - MIRc SINE MIR -116 152 74 8 1453 869 169 84 5 chr11 113895498 113895688 -7948168 - B3 SINE B2 -10 206 2 8 1453 349 331 72 94 chr11 113895933 113896293 -7947563 - ORR1E LTR MaLR -5 354 3 8 1453 209 239 209 0 chr11 113896346 113896413 -7947443 - L2a LINE L2 0 3426 3346 8 1453 1168 179 4 55 chr11 113896806 113897043 -7946813 - URR1B DNA MER1_type 0 225 1 8 1453 766 322 5 0 chr11 113897111 113897322 -7946534 + ID_B1 SINE B4 12 223 -1 8 1453 311 319 84 28 chr11 113897352 113897691 -7946165 - L1MD3 LINE L1 -47 7835 7497 8 1453 234 0 0 0 chr11 113897702 113897728 -7946128 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1453 360 320 32 32 chr11 113897752 113897910 -7945946 - L1MD3 LINE L1 -496 7499 7342 8 1453 235 312 111 81 chr11 113898143 113898565 -7945291 - L2 LINE L2 -895 2524 2090 8 1453 1146 52 0 0 chr11 113900515 113900651 -7943205 - B1_Mus2 SINE Alu -10 137 2 8 1453 210 255 20 0 chr11 113901451 113901502 -7942354 + (CAA)n Simple_repeat Simple_repeat 2 53 0 8 1454 211 267 0 0 chr11 113902251 113902296 -7941560 + G-rich Low_complexity Low_complexity 4 48 0 8 1454 339 44 0 0 chr11 113902534 113902579 -7941277 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 8 1454 1153 205 48 0 chr11 113902588 113902798 -7941058 + ID_B1 SINE B4 1 220 -4 8 1454 288 170 0 0 chr11 113902801 113902854 -7941002 + GA-rich Low_complexity Low_complexity 2 54 0 8 1454 1045 116 6 6 chr11 113902858 113903032 -7940824 + (GGA)n Simple_repeat Simple_repeat 2 175 0 8 1454 258 143 71 0 chr11 113903823 113903879 -7939977 + Tigger7 DNA MER2_type 59 118 -2373 8 1454 252 277 52 35 chr11 113903882 113903998 -7939858 + Tigger7 DNA MER2_type 2313 2430 -61 8 1454 1180 184 26 40 chr11 113907226 113907453 -7936403 + URR1B DNA MER1_type 2 225 0 8 1454 835 288 24 41 chr11 113907518 113907789 -7936067 + B4A SINE B4 2 268 -24 8 1454 411 119 0 0 chr11 113907789 113907856 -7936000 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1454 835 288 24 41 chr11 113907856 113907877 -7935979 + B4A SINE B4 269 289 -3 8 1454 233 262 45 36 chr11 113907944 113908055 -7935801 + L1M4 LINE L1 5317 5428 -752 8 1454 450 259 82 0 chr11 113908189 113908324 -7935532 + L1M4 LINE L1 5423 5568 -606 8 1454 751 231 24 10 chr11 113908324 113908527 -7935329 + B3A SINE B2 15 210 -6 8 1454 315 177 0 0 chr11 113908631 113908693 -7935163 + (TA)n Simple_repeat Simple_repeat 1 62 0 8 1454 653 294 0 30 chr11 113908815 113908983 -7934873 + RSINE1 SINE B4 3 165 0 8 1454 335 248 89 15 chr11 113909023 113909158 -7934698 + L1MDa LINE L1 1584 1736 -4897 8 1454 201 171 0 0 chr11 113909654 113909689 -7934167 + CT-rich Low_complexity Low_complexity 2 36 0 8 1454 280 260 85 16 chr11 113911124 113911253 -7932603 - MER5A1 DNA MER1_type 0 166 29 8 1454 426 267 29 0 chr11 113912305 113912410 -7931446 + MER45A DNA Tip100 66 173 -5 8 1454 693 222 0 0 chr11 113913198 113913369 -7930487 + (TG)n Simple_repeat Simple_repeat 2 172 0 8 1454 1101 219 54 25 chr11 113913370 113913647 -7930209 - B4 SINE B4 0 292 8 8 1454 468 0 0 0 chr11 113913688 113913740 -7930116 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1454 242 232 0 80 chr11 113913968 113914043 -7929813 + Kanga1 DNA Tc2 20 88 -1657 8 1454 182 230 120 13 chr11 113914449 113914524 -7929332 - MIRc SINE MIR -122 146 64 8 1454 456 292 106 4 chr11 113914578 113914797 -7929059 + MIR SINE MIR 2 230 -38 8 1454 247 345 0 43 chr11 113915208 113915302 -7928554 + ORR1D2 LTR MaLR 279 368 -2 8 1454 479 194 177 8 chr11 113915500 113915630 -7928226 + MER5A DNA MER1_type 7 158 -31 8 1454 868 213 223 18 chr11 113916815 113917044 -7926812 + B4 SINE B4 3 278 -14 8 1454 336 362 0 30 chr11 113917048 113917261 -7926595 + (CATA)n Simple_repeat Simple_repeat 1 206 0 8 1454 316 380 17 23 chr11 113917204 113917379 -7926477 + (CATG)n Simple_repeat Simple_repeat 3 176 0 8 1454 218 378 8 16 chr11 113917293 113917414 -7926442 + (CATATA)n Simple_repeat Simple_repeat 4 123 0 8 1454 352 343 126 16 chr11 113918110 113918365 -7925491 + Charlie16a DNA MER1_type 50 332 -10 8 1454 395 296 62 43 chr11 113920160 113920392 -7923464 - MIR SINE MIR -29 233 1 8 1454 723 151 0 0 chr11 113921024 113921150 -7922706 + GA-rich Low_complexity Low_complexity 1 126 0 8 1454 324 103 0 0 chr11 113921903 113921961 -7921895 + (TTCA)n Simple_repeat Simple_repeat 4 61 0 8 1454 318 236 44 22 chr11 113921967 113922058 -7921798 - L2a LINE L2 0 3426 3334 8 1454 405 0 0 0 chr11 113924404 113924449 -7919407 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1454 252 307 0 0 chr11 113924494 113924569 -7919287 - MIRb SINE MIR -90 178 104 8 1454 437 252 3 43 chr11 113925693 113925843 -7918013 + MIR3 SINE MIR 65 205 -3 8 1454 222 281 0 94 chr11 113925841 113925947 -7917909 - MIRc SINE MIR 0 268 173 8 1454 903 219 73 26 chr11 113929066 113929300 -7914556 - ORSL DNA Tip100 -30 245 1 8 1454 902 247 92 30 chr11 113930463 113930734 -7913122 + B4 SINE B4 2 289 -3 8 1454 453 36 0 0 chr11 113930753 113930808 -7913048 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1454 584 287 40 137 chr11 113932053 113932448 -7911408 - ORR1E LTR MaLR 0 359 3 8 1454 417 258 89 7 chr11 113932558 113932697 -7911159 - MLT1B LTR MaLR -16 374 212 8 1454 458 279 9 0 chr11 113932713 113932824 -7911032 - PB1D10 SINE Alu -1 116 5 8 1454 913 238 62 10 chr11 113932871 113933079 -7910777 + ID_B1 SINE B4 6 224 0 8 1454 285 337 0 0 chr11 113933090 113933173 -7910683 + GA-rich Low_complexity Low_complexity 4 86 0 8 1454 291 322 83 22 chr11 113933915 113934096 -7909760 + L2a LINE L2 2989 3180 -246 8 1454 435 258 50 8 chr11 113934180 113934308 -7909548 - MTE2b LTR MaLR -247 132 4 8 1454 591 259 104 33 chr11 113934311 113934523 -7909333 - B4 SINE B4 -56 236 10 8 1454 385 293 17 33 chr11 113935415 113935535 -7908321 + MER58A DNA MER1_type 1 118 -106 8 1454 225 284 33 33 chr11 113935659 113935750 -7908106 + MER58A DNA MER1_type 134 224 0 8 1454 3288 211 112 12 chr11 113936205 113937015 -7906841 - RCHARR1 DNA MER1_type -1 973 83 8 1454 411 241 73 18 chr11 113937241 113937351 -7906505 + PB1D10 SINE Alu 2 117 0 8 1454 195 335 81 31 chr11 113938008 113938168 -7905688 + L2 LINE L2 1722 1889 -1530 8 1454 334 294 31 16 chr11 113938537 113938665 -7905191 + (CATG)n Simple_repeat Simple_repeat 3 132 0 8 1454 180 0 0 0 chr11 113938827 113938847 -7905009 + (CAT)n Simple_repeat Simple_repeat 2 21 0 8 1454 1121 195 47 35 chr11 113939498 113939753 -7904103 + Lx8 LINE L1 6874 7131 -342 8 1454 695 236 13 33 chr11 113939754 113939959 -7903897 + B3A SINE B2 1 204 -12 8 1454 944 41 8 0 chr11 113939965 113940086 -7903770 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 8 1454 25 31 0 0 chr11 113940254 113940286 -7903570 + AT_rich Low_complexity Low_complexity 1 32 0 8 1454 5048 178 41 4 chr11 113940399 113941300 -7902556 - Lx5 LINE L1 0 7050 6117 8 1454 2238 126 61 3 chr11 113941316 113941691 -7902165 + Lx5 LINE L1 5673 6069 -981 8 1454 393 22 0 0 chr11 113942248 113942294 -7901562 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1454 249 119 0 0 chr11 113943163 113943205 -7900651 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1454 347 256 286 9 chr11 113943326 113943543 -7900313 - B4A SINE B4 -12 280 4 9 1454 275 306 12 12 chr11 113943545 113943631 -7900225 + PB1D10 SINE Alu 12 97 -20 9 1454 463 292 31 33 chr11 113943952 113944119 -7899737 + L1M5 LINE L1 5459 5634 -606 9 1454 224 264 177 46 chr11 113944193 113944369 -7899487 - MIRc SINE MIR -17 251 42 9 1454 984 273 103 56 chr11 113944419 113944815 -7899041 + MTD LTR MaLR 5 419 0 9 1454 347 306 144 112 chr11 113944875 113945006 -7898850 + LTR16A1 LTR ERVL 13 146 -310 9 1454 216 0 0 0 chr11 113945006 113945030 -7898826 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1454 347 306 144 112 chr11 113945030 113945203 -7898653 + LTR16A1 LTR ERVL 147 327 -129 9 1454 1231 211 115 68 chr11 113945224 113945382 -7898474 + ORR1D1 LTR MaLR 13 163 -211 9 1454 603 0 0 0 chr11 113945382 113945449 -7898407 + (TC)n Simple_repeat Simple_repeat 2 68 0 9 1454 1231 211 115 68 chr11 113945449 113945630 -7898226 + ORR1D1 LTR MaLR 164 367 -7 9 1454 194 312 176 13 chr11 113945711 113945870 -7897986 - MER5A DNA MER1_type -4 185 1 9 1454 305 333 38 25 chr11 113946209 113946369 -7897487 + ERVL-B4-int LTR ERVL 415 576 -5138 9 1454 1588 232 70 3 chr11 113946568 113946923 -7896933 + MTE2a LTR MaLR 1 379 0 9 1454 250 319 96 85 chr11 113946925 113947312 -7896544 + ERVL-B4-int LTR ERVL 1968 2358 -3356 9 1454 1014 307 14 14 chr11 113947534 113947815 -7896041 - B4A SINE B4 -10 282 2 9 1454 534 239 8 34 chr11 113948050 113948167 -7895689 + B3A SINE B2 41 154 -44 9 1454 423 0 0 0 chr11 113948180 113948227 -7895629 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1454 252 328 59 25 chr11 113948561 113948680 -7895176 - LTR33A LTR ERVL -14 506 384 9 1454 1195 216 107 59 chr11 113948875 113949110 -7894746 - MTD LTR MaLR -17 402 152 9 1454 3099 78 2 2 chr11 113949110 113949510 -7894346 - MTB LTR MaLR 0 400 1 9 1454 1195 228 118 76 chr11 113949510 113949632 -7894224 - MTD LTR MaLR -236 183 10 9 1454 780 241 35 12 chr11 113949639 113949811 -7894045 + ID_B1 SINE B4 39 214 -10 9 1454 185 111 30 45 chr11 113949811 113949877 -7893979 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 9 1454 568 254 8 23 chr11 113950251 113950384 -7893472 - RSINE1 SINE B4 -34 131 1 9 1454 741 241 38 0 chr11 113950681 113950839 -7893017 + RSINE1 SINE B4 2 165 0 9 1454 441 212 0 0 chr11 113950839 113950957 -7892899 + (CA)n Simple_repeat Simple_repeat 1 118 0 9 1454 250 262 13 0 chr11 113951017 113951166 -7892690 + (CA)n Simple_repeat Simple_repeat 2 152 0 9 1454 236 320 0 0 chr11 113951168 113951243 -7892613 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 9 1454 503 206 0 44 chr11 113951247 113951430 -7892426 + (CATA)n Simple_repeat Simple_repeat 4 178 0 9 1454 453 257 0 0 chr11 113951481 113951660 -7892196 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1454 339 181 0 0 chr11 113951721 113951793 -7892063 + (CA)n Simple_repeat Simple_repeat 2 73 0 9 1454 348 302 154 40 chr11 113951801 113952085 -7891771 - L1M5 LINE L1 -1728 4418 4096 9 1454 775 269 57 0 chr11 113952300 113952493 -7891363 - MLT1A0 LTR MaLR -1 364 161 9 1454 327 333 192 0 chr11 113952547 113952667 -7891189 + LTR33A LTR ERVL 104 246 -274 9 1454 510 294 174 6 chr11 113952678 113952999 -7890857 - MTD LTR MaLR -13 406 32 9 1454 245 195 77 44 chr11 113953247 113953338 -7890518 - L1MA7 LINE L1 -10 6281 6188 9 1454 258 344 7 20 chr11 113953675 113953795 -7890061 - MIRc SINE MIR -151 125 4 9 1454 528 16 0 0 chr11 113954122 113954183 -7889673 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1454 982 275 7 90 chr11 113954183 113954471 -7889385 - B4 SINE B4 -23 269 6 9 1454 513 0 0 0 chr11 113955286 113955343 -7888513 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1454 588 318 139 4 chr11 113955353 113955590 -7888266 - B4A SINE B4 -23 269 1 9 1454 393 22 0 0 chr11 113956651 113956697 -7887159 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1454 365 264 139 125 chr11 113956723 113957004 -7886852 - B4 SINE B4 -6 286 2 9 1454 1224 55 0 0 chr11 113957495 113957640 -7886216 + B1_Mus1 SINE Alu 2 146 -2 9 1454 695 44 0 11 chr11 113957669 113957761 -7886095 + (GGGAA)n Simple_repeat Simple_repeat 2 92 0 9 1454 405 0 0 0 chr11 113957763 113957808 -7886048 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 9 1454 1067 158 0 26 chr11 113957883 113958172 -7885684 - URR1B DNA MER1_type 0 225 42 9 1454 1064 235 53 11 chr11 113958598 113958861 -7884995 + B4 SINE B4 1 274 -18 9 1454 30 37 0 18 chr11 113958892 113958919 -7884937 + AT_rich Low_complexity Low_complexity 1 27 0 9 1454 908 243 0 82 chr11 113958919 113959152 -7884704 + B3 SINE B2 1 214 -2 9 1454 30 37 0 18 chr11 113959152 113959179 -7884677 + AT_rich Low_complexity Low_complexity 1 27 0 9 1454 324 0 0 0 chr11 113959269 113959305 -7884551 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1454 297 309 86 57 chr11 113959373 113959548 -7884308 - L2c LINE L2 -72 3315 3136 9 1454 228 312 0 18 chr11 113959683 113959797 -7884059 + L1MEf LINE L1 546 657 -6279 9 1454 816 268 130 15 chr11 113959886 113960045 -7883811 + B4A SINE B4 1 178 -114 9 1454 1883 132 179 6 chr11 113960045 113960380 -7883476 + ORR1B1 LTR MaLR 1 393 -1 9 1454 816 268 130 15 chr11 113960380 113960482 -7883374 + B4A SINE B4 179 292 0 9 1454 310 263 16 8 chr11 113960994 113961127 -7882729 + L1MEf LINE L1 915 1000 -5452 9 1454 21 0 0 0 chr11 113961214 113961235 -7882621 + AT_rich Low_complexity Low_complexity 1 21 0 9 1454 573 295 0 55 chr11 113961261 113961342 -7882514 - RSINE1 SINE B4 -2 163 88 9 1454 1803 219 41 22 chr11 113961342 113961753 -7882103 + MTD LTR MaLR 1 419 0 9 1454 573 295 0 55 chr11 113961753 113961836 -7882020 - RSINE1 SINE B4 -78 87 8 9 1454 791 285 104 0 chr11 113961848 113962041 -7881815 - ID_B1 SINE B4 0 224 12 9 1454 462 351 55 39 chr11 113962055 113962819 -7881037 + L1MEf LINE L1 2213 2960 -4590 9 1454 403 314 70 70 chr11 113963031 113963302 -7880554 + ORR1E LTR MaLR 89 359 0 9 1454 206 118 0 0 chr11 113963559 113963593 -7880263 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1454 561 255 176 48 chr11 113963815 113964025 -7879831 + B4 SINE B4 2 238 -54 9 1454 1779 193 86 26 chr11 113964030 113964413 -7879443 - MTD LTR MaLR -7 412 7 9 1454 282 270 14 0 chr11 113964531 113964605 -7879251 + GA-rich Low_complexity Low_complexity 3 77 0 9 1454 854 322 112 17 chr11 113964796 113965429 -7878427 + L1MEf LINE L1 3780 4472 -2982 9 1454 708 74 0 0 chr11 113965437 113965532 -7878324 + (CTAA)n Simple_repeat Simple_repeat 1 95 0 9 1454 430 311 106 46 chr11 113965562 113965977 -7877879 + L1MEf LINE L1 4589 5028 -2426 9 1454 583 257 50 22 chr11 113965977 113966116 -7877740 - B1_Mur1 SINE Alu -1 148 6 9 1454 244 352 0 45 chr11 113966021 113966131 -7877725 - MT2B LTR ERVL -341 260 156 9 1454 23 0 0 0 chr11 113966131 113966154 -7877702 + AT_rich Low_complexity Low_complexity 1 23 0 9 1454 638 286 74 6 chr11 113966175 113966337 -7877519 - B3 SINE B2 -36 180 8 9 1454 364 364 27 62 chr11 113966374 113966415 -7877441 + L1MEf LINE L1 5124 5157 -2297 9 1454 225 359 13 0 chr11 113966415 113966493 -7877363 + ID4_ SINE ID 5 83 0 9 1454 364 364 27 62 chr11 113966493 113966890 -7876966 + L1MEf LINE L1 5158 5547 -1907 9 1454 252 0 0 0 chr11 113966920 113966948 -7876908 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1454 1453 179 76 7 chr11 113966970 113967274 -7876582 - Lx9 LINE L1 -29 7615 7291 9 1454 820 171 141 21 chr11 113967274 113967465 -7876391 - B3 SINE B2 -2 214 1 9 1454 260 281 81 37 chr11 113967760 113967952 -7875904 + L1ME3 LINE L1 5910 6113 -331 9 1454 180 0 0 0 chr11 113968456 113968476 -7875380 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1454 251 253 11 88 chr11 113968490 113968581 -7875275 + MER112 DNA MER1_type 27 110 -151 9 1454 306 0 0 0 chr11 113968629 113968663 -7875193 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1454 215 114 23 0 chr11 113968846 113968890 -7874966 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1454 315 291 30 37 chr11 113968925 113969089 -7874767 + (TG)n Simple_repeat Simple_repeat 2 164 0 9 1454 523 293 29 0 chr11 113969663 113969803 -7874053 - RSINE1 SINE B4 -19 146 3 9 1454 289 197 169 0 chr11 113970201 113970272 -7873584 - MLT1H LTR MaLR -49 500 418 9 1454 739 66 0 93 chr11 113970305 113970455 -7873401 + CT-rich Low_complexity Low_complexity 2 137 0 9 1454 398 154 0 28 chr11 113970492 113970599 -7873257 + CT-rich Low_complexity Low_complexity 1 104 0 9 1454 1008 256 143 44 chr11 113970797 113971140 -7872716 - MTEb LTR MaLR 0 379 3 9 1454 337 278 22 22 chr11 113971173 113971265 -7872591 + MIRb SINE MIR 91 182 -86 9 1454 1982 193 50 27 chr11 113971470 113971874 -7871982 - MTD LTR MaLR -2 417 5 9 1454 327 49 0 0 chr11 113971946 113971987 -7871869 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 9 1454 243 0 0 0 chr11 113971988 113972015 -7871841 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1454 438 36 0 0 chr11 113972015 113972070 -7871786 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 1454 971 238 0 20 chr11 113972116 113972313 -7871543 - B4 SINE B4 -98 194 2 9 1454 468 286 71 0 chr11 113972805 113972959 -7870897 + MER5A1 DNA MER1_type 2 166 0 9 1454 1018 228 100 10 chr11 113973337 113973656 -7870200 - MTD LTR MaLR 0 419 63 9 1454 365 339 77 12 chr11 113974502 113974672 -7869184 - L2a LINE L2 -23 3403 3223 9 1454 200 310 34 11 chr11 113974730 113974818 -7869038 - L2a LINE L2 -283 3143 3054 9 1454 1321 190 48 1 chr11 113974864 113975149 -7868707 - Lx5 LINE L1 -841 6209 5858 9 1454 4308 150 112 8 chr11 113975145 113975907 -7867949 + Lx5 LINE L1 6206 7047 -3 9 1454 251 229 5 0 chr11 113977101 113977164 -7866692 - L2b LINE L2 -1 3425 3331 9 1454 243 304 139 0 chr11 113977361 113977440 -7866416 - B4A SINE B4 -149 143 54 9 1454 515 118 11 68 chr11 113978417 113978608 -7865248 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1454 322 258 152 33 chr11 113978637 113978691 -7865165 - HAL1-3A_ME LINE L1 -831 2027 1971 9 1454 389 254 58 128 chr11 113978691 113979003 -7864853 - B4A SINE B4 0 292 3 9 1454 322 258 152 33 chr11 113979003 113979132 -7864724 - HAL1-3A_ME LINE L1 -888 1970 1823 9 1454 961 273 14 17 chr11 113979169 113979460 -7864396 - B4A SINE B4 -2 290 1 9 1454 278 294 0 0 chr11 113980186 113980254 -7863602 - B4 SINE B4 -136 156 89 9 1454 585 259 118 15 chr11 113980987 113981181 -7862675 + MTD LTR MaLR 1 215 -204 9 1454 706 191 113 0 chr11 113981181 113981322 -7862534 + B3 SINE B2 3 159 -57 9 1454 210 37 0 0 chr11 113981330 113981357 -7862499 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 9 1454 718 260 77 20 chr11 113981618 113981814 -7862042 - ID_B1 SINE B4 -15 209 3 9 1454 1291 274 100 0 chr11 113982025 113982156 -7861700 - MTEa LTR MaLR -24 355 196 9 1454 477 34 0 0 chr11 113982156 113982215 -7861641 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1454 1291 274 100 0 chr11 113982215 113982404 -7861452 - MTEa LTR MaLR -184 195 4 9 1454 429 292 39 56 chr11 113983139 113983269 -7860587 + L1ME4a LINE L1 5882 6017 -107 1 1454 327 49 0 0 chr11 113983269 113983310 -7860546 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1454 429 292 39 56 chr11 113983310 113983411 -7860445 + L1ME4a LINE L1 6018 6109 -15 1 1454 566 203 7 0 chr11 113984142 113984285 -7859571 + (CA)n Simple_repeat Simple_repeat 1 144 0 1 1454 547 228 0 11 chr11 113984324 113984506 -7859350 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 1454 675 285 80 72 chr11 113984954 113985230 -7858626 - MTEa LTR MaLR -3 376 99 1 1454 680 243 136 0 chr11 113985235 113985412 -7858444 - MTEb LTR MaLR -109 270 70 1 1454 305 47 23 0 chr11 113985420 113985463 -7858393 + (TTATA)n Simple_repeat Simple_repeat 2 45 0 1 1454 806 275 63 65 chr11 113985680 113986032 -7857824 + MLT1A0 LTR MaLR 9 394 -14 1 1454 375 255 75 69 chr11 113987159 113987319 -7856537 + LTR16A1 LTR ERVL 267 427 -29 1 1454 262 364 11 6 chr11 113987490 113987667 -7856189 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1454 272 273 69 80 chr11 113987671 113987846 -7856010 - RLTR21 LTR ERVK -318 1254 1082 1 1454 229 309 47 67 chr11 113987981 113988130 -7855726 + MLT2B5 LTR ERVL 271 416 -139 1 1454 275 274 114 94 chr11 113989276 113989425 -7854431 + MLT1B LTR MaLR 1 152 -238 1 1454 592 219 0 32 chr11 113989508 113989631 -7854225 - PB1D7 SINE Alu 0 120 2 1 1454 255 319 32 122 chr11 113989632 113989821 -7854035 + MLT1B LTR MaLR 148 319 -71 1 1454 215 316 111 19 chr11 113989939 113990123 -7853733 + MIRb SINE MIR 25 225 -37 1 1454 209 265 23 35 chr11 113991622 113991708 -7852148 + CT-rich Low_complexity Low_complexity 2 86 0 1 1454 1030 218 185 42 chr11 113991838 113992168 -7851688 + MTEa LTR MaLR 3 379 0 1 1454 839 183 83 33 chr11 113992189 113992370 -7851486 + ORR1D1 LTR MaLR 1 190 -184 1 1454 573 144 16 24 chr11 113992372 113992621 -7851235 + (TCTCTG)n Simple_repeat Simple_repeat 1 246 0 1 1454 351 176 0 29 chr11 113992630 113992700 -7851156 + ORR1D1 LTR MaLR 164 231 -147 1 1454 777 167 87 25 chr11 113992757 113992925 -7850931 + ORR1D1 LTR MaLR 197 384 0 1 1454 291 319 79 62 chr11 113992937 113993114 -7850742 + MLT1G3 LTR MaLR 40 219 -376 1 1454 362 313 59 13 chr11 113993575 113993727 -7850129 + RMER15 LTR ERVL 406 564 -11 1 1454 226 393 45 0 chr11 113993795 113993907 -7849949 + MLT1G3 LTR MaLR 436 552 -3 1 1454 202 326 0 0 chr11 113994378 113994421 -7849435 + MIR SINE MIR 76 118 -90 1 1454 187 136 39 154 chr11 113994419 113994471 -7849385 + L3b LINE CR1 425 470 -12 1 1454 915 239 149 63 chr11 113994807 113994845 -7849011 - B4A SINE B4 0 292 263 1 1454 554 0 15 0 chr11 113994845 113994911 -7848945 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1454 915 239 149 63 chr11 113994911 113995140 -7848716 - B4A SINE B4 -30 262 2 1 1454 450 263 82 15 chr11 113995141 113995276 -7848580 + MTEa LTR MaLR 1 144 -235 1 1454 821 188 17 0 chr11 113995276 113995452 -7848404 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 1 1454 609 214 0 0 chr11 113995455 113995558 -7848298 + ID_B1 SINE B4 118 220 -4 1 1454 565 236 94 16 chr11 113995546 113995734 -7848122 + MTEa LTR MaLR 155 377 -2 1 1454 699 75 0 0 chr11 113996140 113996234 -7847622 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 1 1454 270 73 0 0 chr11 113996383 113996424 -7847432 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1454 207 0 0 0 chr11 113997179 113997202 -7846654 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1454 357 295 88 94 chr11 113998532 113998839 -7845017 - RMER17C LTR ERVK -105 305 1 1 1454 1919 186 73 16 chr11 113998869 113999252 -7844604 + MTD LTR MaLR 13 417 -2 1 1454 22 0 0 0 chr11 113999636 113999658 -7844198 + AT_rich Low_complexity Low_complexity 1 22 0 1 1454 1075 43 40 54 chr11 113999808 113999956 -7843900 + B1_Mm SINE Alu 1 146 -1 1 1454 222 136 0 0 chr11 113999956 114000000 -7843856 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1454 196 244 231 0 chr11 114000225 114000303 -7843553 + L2a LINE L2 3322 3417 -9 1 1454 305 333 33 120 chr11 114001250 114001400 -7842456 + Charlie4z DNA MER1_type 18 154 -13 2 1454 233 364 11 39 chr11 114001434 114001614 -7842242 + L1M5 LINE L1 4903 5077 -1069 3 1454 550 271 128 20 chr11 114001833 114002029 -7841827 + B4A SINE B4 1 217 -75 4 1454 360 0 0 0 chr11 114002112 114002152 -7841704 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1454 2398 78 0 0 chr11 114002723 114003042 -7840814 + ORR1A2 LTR MaLR 1 319 -8 6 1454 198 277 108 0 chr11 114003056 114003139 -7840717 - MIRc SINE MIR -120 148 54 7 1454 638 13 13 0 chr11 114003328 114003407 -7840449 + (TGG)n Simple_repeat Simple_repeat 1 80 0 8 1454 750 290 122 27 chr11 114003592 114003854 -7840002 + B4A SINE B4 6 292 0 9 1454 513 239 134 21 chr11 114003847 114004019 -7839837 - B3A SINE B2 -35 181 1 1 1454 231 330 34 68 chr11 114004586 114004823 -7839033 + L1M5 LINE L1 5582 5810 -314 3 1454 1170 267 10 24 chr11 114004997 114005285 -7838571 + B4A SINE B4 4 287 -5 1 1454 494 70 0 14 chr11 114005306 114005378 -7838478 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1454 838 316 62 9 chr11 114005629 114005967 -7837889 - L5 LINE RTE -567 1698 1343 1 1454 198 246 0 0 chr11 114006224 114006285 -7837571 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 1 1454 356 254 6 17 chr11 114006379 114006559 -7837297 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 1 1454 295 41 20 20 chr11 114007610 114007660 -7836196 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1454 2118 177 32 7 chr11 114008552 114008962 -7834894 - MTC LTR MaLR 0 421 2 1 1454 22 0 0 0 chr11 114009168 114009190 -7834666 + AT_rich Low_complexity Low_complexity 1 22 0 1 1454 498 294 24 36 chr11 114009585 114009751 -7834105 + MER2 DNA MER2_type 24 187 -158 1 1454 651 250 10 62 chr11 114009752 114009961 -7833895 + B3A SINE B2 1 198 0 2 1454 293 192 37 44 chr11 114009989 114010125 -7833731 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 2 1454 542 202 18 6 chr11 114010140 114010304 -7833552 + (TA)n Simple_repeat Simple_repeat 1 166 0 2 1454 622 274 163 5 chr11 114010315 114010524 -7833332 + Lx8 LINE L1 7090 7331 -142 2 1454 681 174 24 0 chr11 114010525 114010666 -7833190 + B1_Mur1 SINE Alu 5 148 -1 2 1454 637 300 27 80 chr11 114012265 114012566 -7831290 + B4A SINE B4 8 292 0 2 1454 250 241 21 177 chr11 114012879 114012975 -7830881 - PB1 SINE Alu -20 107 27 2 1454 239 322 49 16 chr11 114012891 114013014 -7830842 - ID_B1 SINE B4 -30 194 68 2 1454 455 243 27 29 chr11 114013019 114013146 -7830710 - PB1D10 SINE Alu -1 126 1 2 1454 468 51 0 0 chr11 114014413 114014472 -7829384 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1454 215 235 0 38 chr11 114014590 114014643 -7829213 - MIRb SINE MIR -103 165 115 3 1454 904 279 26 23 chr11 114014672 114014936 -7828920 + B4 SINE B4 1 265 -27 3 1454 189 0 0 0 chr11 114015016 114015037 -7828819 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1454 414 39 0 0 chr11 114016362 114016414 -7827442 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1454 1209 174 4 35 chr11 114016446 114016678 -7827178 + URR1B DNA MER1_type 1 225 0 3 1454 663 54 0 0 chr11 114016737 114016829 -7827027 + (TG)n Simple_repeat Simple_repeat 2 93 0 3 1454 2998 49 2 35 chr11 114016938 114017341 -7826515 + RLTR10 LTR ERVK 1 390 0 3 1454 228 343 124 0 chr11 114017444 114017581 -7826275 + MIR SINE MIR 31 184 -78 3 1454 208 231 0 0 chr11 114018192 114018231 -7825625 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1454 695 294 14 58 chr11 114018263 114018556 -7825300 - B4 SINE B4 -10 282 3 3 1454 216 67 0 0 chr11 114018864 114018894 -7824962 - B3A SINE B2 -165 33 4 4 1454 1191 254 33 77 chr11 114018900 114019266 -7824590 + MTEb LTR MaLR 28 377 -2 4 1454 1580 222 27 27 chr11 114019762 114020132 -7823724 - ORR1D2 LTR MaLR 0 370 1 4 1454 1005 114 23 6 chr11 114020488 114020664 -7823192 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 4 1454 220 268 0 18 chr11 114020682 114020739 -7823117 + RSINE1 SINE B4 2 57 -108 4 1454 338 250 57 0 chr11 114021251 114021339 -7822517 - Lx8 LINE L1 -354 7119 7027 4 1454 1271 272 99 7 chr11 114021338 114021410 -7822446 - Lx8 LINE L1 -698 6775 6703 4 1454 198 0 0 0 chr11 114021410 114021432 -7822424 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1454 1271 272 99 7 chr11 114021432 114021762 -7822094 - Lx8 LINE L1 -771 6702 6336 4 1454 300 27 0 0 chr11 114021802 114021839 -7822017 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 4 1454 3164 161 115 8 chr11 114021976 114022635 -7821221 - RMER19A LTR ERVK 0 737 8 4 1454 3359 42 16 0 chr11 114022636 114023062 -7820794 + L1Md_F2 LINE L1 5612 6044 -538 4 1454 324 0 0 0 chr11 114023063 114023099 -7820757 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1454 431 128 0 93 chr11 114023340 114023426 -7820430 - ORR1D2 LTR MaLR 0 370 293 5 1454 384 342 50 45 chr11 114023470 114023712 -7820144 - MLT1C LTR MaLR 0 467 225 5 1454 297 51 0 0 chr11 114024331 114024370 -7819486 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1454 486 153 0 0 chr11 114024447 114024519 -7819337 - ID4_ SINE ID -10 73 2 5 1454 773 247 66 137 chr11 114024541 114024949 -7818907 + MTE2a LTR MaLR 1 379 0 5 1454 953 188 22 11 chr11 114025698 114025881 -7817975 + B4A SINE B4 46 230 -62 5 1454 655 296 72 13 chr11 114025882 114026118 -7817738 - Lx9 LINE L1 -172 7472 7223 5 1454 1176 15 0 0 chr11 114026196 114026333 -7817523 + B1_Mus2 SINE Alu 2 138 -9 5 1454 264 30 0 0 chr11 114026333 114026366 -7817490 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1454 21 57 0 0 chr11 114026467 114026502 -7817354 + AT_rich Low_complexity Low_complexity 1 35 0 6 1454 225 194 141 77 chr11 114026502 114026580 -7817276 + B4A SINE B4 210 292 0 5 1454 237 286 13 13 chr11 114026585 114026663 -7817193 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1454 236 321 62 9 chr11 114026676 114026789 -7817067 + MIRc SINE MIR 92 210 -58 6 1454 1192 99 15 55 chr11 114028026 114028228 -7815628 - B2_Mm2 SINE B2 -1 194 1 6 1454 1291 233 68 24 chr11 114029789 114030159 -7813697 + MLT1B LTR MaLR 1 386 -4 6 1454 414 215 8 15 chr11 114031122 114031254 -7812602 + CT-rich Low_complexity Low_complexity 1 131 0 6 1454 369 255 73 21 chr11 114031860 114031956 -7811900 + B1F SINE Alu 1 101 -48 6 1454 304 227 0 30 chr11 114031964 114032064 -7811792 + GA-rich Low_complexity Low_complexity 2 98 0 6 1454 498 221 65 154 chr11 114032216 114032430 -7811426 + MTE2a LTR MaLR 3 197 -182 6 181 745 257 6 11 chr11 114032515 114032696 -7811160 + MTE2a LTR MaLR 199 378 -1 6 1455 991 230 93 41 chr11 114034124 114034468 -7809388 + MTEa LTR MaLR 18 379 0 6 1455 207 179 0 0 chr11 114034893 114034932 -7808924 + T-rich Low_complexity Low_complexity 4 42 0 7 1455 384 22 0 0 chr11 114035697 114035742 -7808114 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1455 668 276 110 26 chr11 114035786 114036050 -7807806 - B4A SINE B4 -5 287 2 7 1455 243 60 60 0 chr11 114037488 114037538 -7806318 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 7 1455 190 297 45 109 chr11 114037904 114038170 -7805686 + L2c LINE L2 3088 3335 -40 7 1455 291 247 12 12 chr11 114039699 114039781 -7804075 + C-rich Low_complexity Low_complexity 4 85 0 7 1455 228 218 36 0 chr11 114040009 114040054 -7803802 + B4 SINE B4 184 230 -62 7 1455 327 197 53 0 chr11 114040054 114040130 -7803726 + B3A SINE B2 1 80 -118 7 1455 411 292 29 94 chr11 114040696 114040767 -7803089 + B4A SINE B4 9 80 -212 7 1455 231 36 0 0 chr11 114040767 114040795 -7803061 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 7 1455 411 292 29 94 chr11 114040795 114040893 -7802963 + B4A SINE B4 81 167 -125 7 1455 312 325 50 0 chr11 114040939 114041059 -7802797 + B3A SINE B2 2 127 -71 8 1455 492 304 14 0 chr11 114042443 114042581 -7801275 + RSINE1 SINE B4 26 165 0 8 1455 185 367 25 8 chr11 114042586 114042707 -7801149 + L3 LINE CR1 4175 4297 -192 8 1455 787 154 6 55 chr11 114042899 114043064 -7800792 + ORR1C1 LTR MaLR 1 157 -221 8 1455 269 301 0 31 chr11 114043057 114043153 -7800703 + ID_B1 SINE B4 130 222 -2 8 1455 387 256 0 0 chr11 114043164 114043246 -7800610 + ID4_ SINE ID 2 83 0 8 1455 249 231 19 0 chr11 114045115 114045167 -7798689 + CT-rich Low_complexity Low_complexity 1 53 0 8 1455 313 250 208 8 chr11 114045167 114045292 -7798564 - HAL1-3A_ME LINE L1 -419 2439 2290 8 1455 228 371 0 9 chr11 114045301 114045407 -7798449 + C-rich Low_complexity Low_complexity 2 106 0 8 1455 185 305 147 0 chr11 114045937 114046032 -7797824 - MIR3 SINE MIR -95 113 5 8 1455 259 123 0 50 chr11 114047136 114047196 -7796660 + G-rich Low_complexity Low_complexity 3 59 0 9 1455 240 122 0 0 chr11 114048102 114048143 -7795713 + (CGGGG)n Simple_repeat Simple_repeat 5 45 0 9 1455 207 167 0 0 chr11 114048541 114048583 -7795273 + G-rich Low_complexity Low_complexity 4 45 0 9 1455 385 237 72 29 chr11 114048680 114048819 -7795037 - MER5A DNA MER1_type -6 183 39 9 1455 939 215 84 36 chr11 114049208 114049483 -7794373 + B4 SINE B4 1 288 -4 9 1455 354 189 0 0 chr11 114049529 114049640 -7794216 + CT-rich Low_complexity Low_complexity 2 112 0 9 1455 447 19 0 0 chr11 114049640 114049692 -7794164 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1455 720 97 9 0 chr11 114050185 114050298 -7793558 + URR1B DNA MER1_type 110 223 -2 9 1455 894 249 66 49 chr11 114050711 114050998 -7792858 - B4A SINE B4 0 292 1 9 1455 278 307 0 0 chr11 114051543 114051612 -7792244 + RMER30 DNA MER1_type 8 76 -126 9 1455 520 297 52 56 chr11 114051612 114051844 -7792012 + B4 SINE B4 2 232 -60 1 1455 2158 180 205 22 chr11 114051867 114052457 -7791399 + RMER19A LTR ERVK 1 698 -39 1 1455 337 198 66 55 chr11 114052547 114052584 -7791272 + L1MEg LINE L1 1853 1893 -4191 1 1455 1145 68 0 0 chr11 114052584 114052731 -7791125 + B1_Mus1 SINE Alu 2 148 0 1 1455 337 198 66 55 chr11 114052731 114052784 -7791072 + L1MEg LINE L1 1894 1944 -4140 1 1455 452 265 29 29 chr11 114052790 114052926 -7790930 - Charlie12 DNA MER1_type -2731 142 7 1 1455 194 368 66 0 chr11 114053012 114053148 -7790708 - MIR SINE MIR -34 228 84 1 1455 290 306 87 93 chr11 114053548 114053748 -7790108 - MLT1A LTR MaLR -24 366 179 1 1455 609 258 0 13 chr11 114053748 114053905 -7789951 - RSINE1 SINE B4 -7 158 4 1 1455 397 295 50 27 chr11 114053905 114054071 -7789785 - MLT1A LTR MaLR -212 178 2 1 1455 276 130 0 0 chr11 114054174 114054220 -7789636 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1455 357 24 0 0 chr11 114054610 114054652 -7789204 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1455 472 145 0 0 chr11 114054976 114055052 -7788804 - B1_Mur1 SINE Alu -43 106 31 1 1455 861 256 8 74 chr11 114055037 114055294 -7788562 - B4 SINE B4 -51 241 2 1 1455 207 0 0 0 chr11 114055302 114055325 -7788531 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1455 588 283 104 20 chr11 114055836 114056085 -7787771 + B4 SINE B4 1 270 -22 1 1455 537 16 0 0 chr11 114056113 114056175 -7787681 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1455 183 261 46 0 chr11 114056866 114056931 -7786925 - MIR3 SINE MIR -139 69 2 1 1455 262 278 56 0 chr11 114056932 114057022 -7786834 + MIR SINE MIR 91 185 -77 1 1455 275 235 55 110 chr11 114057125 114057216 -7786640 + B4A SINE B4 11 96 -196 1 1455 760 157 214 6 chr11 114057216 114057389 -7786467 + B3 SINE B2 1 209 -7 1 1455 23 33 0 0 chr11 114057389 114057419 -7786437 + AT_rich Low_complexity Low_complexity 1 30 0 1 1455 368 336 62 7 chr11 114057429 114057573 -7786283 + B4A SINE B4 105 256 -36 1 1455 223 208 232 30 chr11 114057641 114057740 -7786116 - L2c LINE L2 -222 3165 3047 1 1455 704 312 9 9 chr11 114058058 114058284 -7785572 - MER33 DNA MER1_type -7 317 92 1 1455 303 104 0 0 chr11 114058482 114058530 -7785326 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1455 374 0 22 0 chr11 114058530 114058576 -7785280 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1455 757 282 14 40 chr11 114058667 114058889 -7784967 - B4 SINE B4 -74 218 3 1 1455 395 173 80 0 chr11 114059063 114059138 -7784718 + ID_B1 SINE B4 96 176 -48 1 1455 321 283 76 0 chr11 114059138 114059155 -7784701 + PB1D10 SINE Alu 15 113 -4 1 1455 380 252 0 67 chr11 114059321 114059456 -7784400 - MIR SINE MIR -96 166 48 1 1455 706 199 53 0 chr11 114060751 114060902 -7782954 + RSINE1 SINE B4 3 161 -4 1 1455 288 0 0 0 chr11 114061474 114061506 -7782350 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1455 351 0 0 0 chr11 114062000 114062039 -7781817 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1455 580 267 156 5 chr11 114062049 114062260 -7781596 - B4A SINE B4 -4 288 46 1 1455 186 275 48 36 chr11 114062957 114063040 -7780816 - MIRc SINE MIR -162 106 23 1 1455 1598 248 22 22 chr11 114063350 114063767 -7780089 - MTD LTR MaLR 0 419 3 1 1455 311 315 62 98 chr11 114065390 114065615 -7778241 + B4A SINE B4 2 218 -74 1 1455 481 225 16 62 chr11 114065656 114065784 -7778072 + RSINE1 SINE B4 44 165 0 1 1455 759 157 6 17 chr11 114065803 114065984 -7777872 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1455 423 266 0 9 chr11 114066307 114066421 -7777435 - PB1D10 SINE Alu -2 115 3 1 1455 272 0 79 0 chr11 114066804 114066842 -7777014 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1455 502 223 91 0 chr11 114066842 114066963 -7776893 - ID_B1 SINE B4 -13 211 80 1 1455 405 82 0 16 chr11 114067140 114067202 -7776654 + RLTR9E LTR ERVK 17 77 -332 1 1455 1695 145 9 53 chr11 114067355 114067697 -7776159 + RLTR9E LTR ERVK 83 409 0 1 1455 849 251 73 53 chr11 114068029 114068412 -7775444 + MTE2b LTR MaLR 18 419 0 1 1455 501 276 0 52 chr11 114068946 114069080 -7774776 - RSINE1 SINE B4 -36 129 3 1 1455 216 0 0 0 chr11 114069642 114069666 -7774190 + (TGG)n Simple_repeat Simple_repeat 1 24 0 1 1455 234 0 0 0 chr11 114069668 114069694 -7774162 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1455 730 245 93 5 chr11 114069700 114069893 -7773963 - B4A SINE B4 -1 291 82 1 1455 666 240 124 11 chr11 114069974 114069998 -7773858 - B3 SINE B2 -10 206 168 1 1455 687 65 0 0 chr11 114069998 114070091 -7773765 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1455 666 240 124 11 chr11 114070091 114070251 -7773605 - B3 SINE B2 -49 167 1 1 1455 354 222 33 11 chr11 114070254 114070345 -7773511 - B4 SINE B4 -199 93 1 1 1455 950 209 10 25 chr11 114071023 114071219 -7772637 + ID_B1 SINE B4 28 220 -4 1 1455 229 289 150 38 chr11 114071100 114071233 -7772623 - YREP_Mm Unknown Unknown -1518 294 147 1 1455 1133 75 0 0 chr11 114071370 114071517 -7772339 + B1_Mus2 SINE Alu 1 147 0 1 1455 816 197 6 0 chr11 114071613 114071963 -7771893 + (TCCA)n Simple_repeat Simple_repeat 1 352 0 1 1455 320 245 9 0 chr11 114071990 114072096 -7771760 + (TCCA)n Simple_repeat Simple_repeat 1 107 0 1 1455 409 253 149 7 chr11 114072416 114072608 -7771248 - RMER20B LTR ERVK -119 397 178 1 1455 180 312 167 18 chr11 114072995 114073109 -7770747 - MER5A DNA MER1_type -27 162 32 1 1455 639 275 9 112 chr11 114073239 114073472 -7770384 - B4 SINE B4 -1 291 83 1 1455 440 308 77 0 chr11 114073516 114073659 -7770197 - RSINE1 SINE B4 -8 157 4 1 1455 365 270 22 0 chr11 114073663 114073752 -7770104 - B4 SINE B4 -199 93 3 1 1455 284 326 64 0 chr11 114073758 114073891 -7769965 - MIRc SINE MIR -118 150 5 1 1455 2901 66 5 12 chr11 114073962 114074361 -7769495 - MTA_Mm LTR MaLR 0 396 1 1 1455 1192 216 170 32 chr11 114074783 114075249 -7768607 - RMER4B LTR ERVK -9 576 46 1 1455 3387 25 62 39 chr11 114075488 114075952 -7767904 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1455 703 251 25 16 chr11 114076659 114076865 -7766991 - ORR1E LTR MaLR -182 192 4 1 1455 438 233 105 20 chr11 114076899 114076967 -7766889 + Lx8 LINE L1 6884 6950 -523 1 1455 342 0 0 0 chr11 114076967 114077005 -7766851 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1455 1135 235 276 11 chr11 114077005 114077412 -7766444 + Lx8 LINE L1 6951 7473 0 1 1455 333 0 0 0 chr11 114077620 114077657 -7766199 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1455 450 0 0 0 chr11 114080364 114080414 -7763442 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1455 1118 213 66 15 chr11 114080755 114081027 -7762829 + B4A SINE B4 2 287 -5 1 1455 435 244 0 0 chr11 114081073 114081204 -7762652 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1455 276 308 75 0 chr11 114081360 114081467 -7762389 + Helitron2Na_Mam RC Helitron? 104 218 -106 1 1455 681 260 126 29 chr11 114081581 114081819 -7762037 - B4A SINE B4 -22 270 10 1 1455 672 102 0 0 chr11 114081845 114081943 -7761913 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1455 999 226 135 14 chr11 114081950 114082246 -7761610 + ORR1D2 LTR MaLR 35 366 -4 1 1455 346 268 57 8 chr11 114082247 114082371 -7761485 - MIRb SINE MIR -70 198 69 1 1455 542 229 133 21 chr11 114082445 114082588 -7761268 - RSINE1 SINE B4 -4 161 3 1 1455 359 372 85 25 chr11 114082705 114082986 -7760870 + LTR40a LTR ERVL 220 517 -2 1 1455 537 267 177 20 chr11 114083532 114083768 -7760088 + B4A SINE B4 8 280 -12 1 1455 818 201 65 27 chr11 114083874 114084058 -7759798 - B3A SINE B2 0 198 8 1 1455 413 234 0 31 chr11 114084451 114084466 -7759390 - B3A SINE B2 -5 193 181 1 1455 498 46 0 0 chr11 114084466 114084531 -7759325 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1455 413 234 0 31 chr11 114084531 114084612 -7759244 - B3A SINE B2 -18 180 100 1 1455 240 118 0 0 chr11 114084750 114084784 -7759072 - ID_B1 SINE B4 -5 219 186 1 1455 318 50 0 0 chr11 114084853 114084893 -7758963 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1455 554 258 168 67 chr11 114084923 114085131 -7758725 + B4 SINE B4 30 258 -34 1 1455 531 260 111 47 chr11 114085125 114085315 -7758541 - MTE2b LTR MaLR -128 251 50 1 1455 342 0 0 0 chr11 114085325 114085363 -7758493 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1455 205 269 0 19 chr11 114087310 114087363 -7756493 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1455 309 286 0 45 chr11 114087363 114087451 -7756405 - RSINE1 SINE B4 0 165 82 1 1455 313 313 28 73 chr11 114087485 114087664 -7756192 - B4 SINE B4 -107 185 15 1 1455 216 0 0 0 chr11 114088093 114088117 -7755739 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1455 850 246 59 49 chr11 114088522 114088808 -7755048 + B4A SINE B4 1 289 -3 1 1455 276 111 0 0 chr11 114088826 114088871 -7754985 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1455 281 346 0 0 chr11 114088871 114088949 -7754907 + G-rich Low_complexity Low_complexity 3 80 0 1 1455 562 219 50 50 chr11 114089645 114089804 -7754052 - RSINE1 SINE B4 0 165 7 1 1455 1117 169 26 64 chr11 114089858 114090092 -7753764 - URR1B DNA MER1_type 0 225 1 1 1455 1161 199 109 7 chr11 114090661 114090980 -7752876 + MTD LTR MaLR 80 421 0 1 1455 446 380 88 77 chr11 114091079 114091511 -7752345 + L4 LINE RTE 127 583 -1446 1 1455 1055 62 0 27 chr11 114091511 114091659 -7752197 - B1_Mus2 SINE Alu 0 147 4 1 1455 446 380 88 77 chr11 114091659 114091820 -7752036 + L4 LINE RTE 584 726 -1303 1 1455 5258 110 88 5 chr11 114092027 114092911 -7750945 + RMER17B LTR ERVK 1 958 0 1 1455 185 277 21 0 chr11 114094787 114094834 -7749022 - L2c LINE L2 -73 3314 3267 1 1455 1059 275 116 10 chr11 114094877 114095281 -7748575 + L1MC2 LINE L1 5890 6336 -8 1 1455 276 30 0 0 chr11 114096193 114096226 -7747630 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 1 1455 961 254 63 113 chr11 114096278 114096677 -7747179 - MTE2a LTR MaLR 0 379 1 2 1455 461 211 255 0 chr11 114096889 114097089 -7746767 - MTEb LTR MaLR -8 371 121 2 1455 312 348 0 25 chr11 114097083 114097201 -7746655 + MLT2B5 LTR ERVL 93 207 -394 2 1455 510 103 0 0 chr11 114097203 114097281 -7746575 + (TCCC)n Simple_repeat Simple_repeat 3 80 0 2 1455 207 94 0 0 chr11 114097943 114097958 -7745898 + (A)n Simple_repeat Simple_repeat 1 15 0 2 1455 752 177 56 7 chr11 114097958 114098100 -7745756 + B1_Mur4 SINE Alu 2 150 0 2 1455 207 94 0 0 chr11 114098100 114098116 -7745740 + (A)n Simple_repeat Simple_repeat 1 16 0 2 1455 1000 251 65 45 chr11 114098209 114098595 -7745261 + MTE2a LTR MaLR 18 405 -14 2 1455 565 331 120 30 chr11 114099071 114099586 -7744270 - MLT1G3 LTR MaLR -16 539 1 2 1455 884 307 38 22 chr11 114099676 114099989 -7743867 + ORR1E LTR MaLR 36 353 -6 2 1455 366 232 41 48 chr11 114102303 114102448 -7741408 + ORR1E LTR MaLR 1 144 -215 2 1455 1992 191 17 27 chr11 114103520 114103923 -7739933 - MTD LTR MaLR -1 418 20 2 1455 607 286 19 33 chr11 114104052 114104262 -7739594 - B3 SINE B2 -7 209 3 2 1455 319 298 116 18 chr11 114104856 114105020 -7738836 + MER104 DNA Tc2 1 180 -1 2 1455 1036 231 12 12 chr11 114105564 114105805 -7738051 - RMER5 LTR ERV1 -36 498 258 2 1455 412 201 99 50 chr11 114106099 114106240 -7737616 + RLTR14 LTR ERV1 235 382 0 2 1455 261 163 0 0 chr11 114106286 114106335 -7737521 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 2 1455 455 227 0 7 chr11 114106989 114107144 -7736712 + (CA)n Simple_repeat Simple_repeat 2 155 0 2 1455 492 208 47 20 chr11 114107451 114107585 -7736271 - RSINE1 SINE B4 -29 136 1 2 1455 346 212 62 12 chr11 114107627 114107708 -7736148 - B4 SINE B4 -207 85 1 2 1455 273 280 83 25 chr11 114107709 114107830 -7736026 + MER5A DNA MER1_type 60 187 -2 2 1455 395 280 64 45 chr11 114107838 114107995 -7735861 + MER5B DNA MER1_type 8 167 -11 2 1455 186 133 0 0 chr11 114108270 114108300 -7735556 + (GGATG)n Simple_repeat Simple_repeat 2 31 0 2 1455 957 283 0 24 chr11 114108577 114108830 -7735026 - B4A SINE B4 0 292 46 2 1455 467 248 0 0 chr11 114110038 114110147 -7733709 - PB1D10 SINE Alu -6 111 3 2 1455 387 127 0 0 chr11 114111265 114111328 -7732528 + (A)n Simple_repeat Simple_repeat 1 63 0 2 1455 618 286 164 0 chr11 114111529 114111718 -7732138 - ID_B1 SINE B4 -2 222 3 2 1455 229 298 53 72 chr11 114114898 114115050 -7728806 - MER45A DNA Tip100 -5 173 25 2 1455 347 328 94 31 chr11 114116403 114116595 -7727261 - L1MB4 LINE L1 -117 6063 5860 2 1455 360 0 0 0 chr11 114116595 114116635 -7727221 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1455 278 332 79 56 chr11 114116635 114116666 -7727190 - L1MB7 LINE L1 -324 5860 5828 2 1455 962 282 13 47 chr11 114116666 114116964 -7726892 - B4A SINE B4 -2 290 3 2 1455 278 332 79 56 chr11 114116964 114117040 -7726816 - L1MB7 LINE L1 -357 5827 5753 2 1455 3356 135 8 45 chr11 114117153 114117752 -7726104 - MT2B LTR ERVL -24 577 1 2 1455 356 306 129 58 chr11 114117917 114118212 -7725644 - L1MB7 LINE L1 -281 5903 5588 2 1455 223 335 101 34 chr11 114118243 114118422 -7725434 - L2 LINE L2 -412 3007 2817 2 1455 360 287 16 80 chr11 114118435 114118449 -7725407 + ID SINE ID 70 75 -149 2 1455 528 209 17 60 chr11 114118449 114118566 -7725290 + B1_Mur2 SINE Alu 3 114 -35 2 1455 253 384 52 13 chr11 114118666 114118898 -7724958 - MLT1C LTR MaLR -6 461 221 2 1455 273 237 12 111 chr11 114119129 114119250 -7724606 + PB1 SINE Alu 1 102 -47 2 1455 427 300 187 25 chr11 114120017 114120338 -7723518 - MLT1C LTR MaLR -92 375 3 2 1455 310 291 0 25 chr11 114120433 114120553 -7723303 - Lx7 LINE L1 -15 7681 7565 2 1455 2161 289 57 22 chr11 114120595 114121327 -7722529 - Lx7 LINE L1 -349 7347 6590 2 1455 207 0 0 0 chr11 114121354 114121377 -7722479 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 2 1455 2030 282 94 14 chr11 114121393 114122102 -7721754 - Lx7 LINE L1 -1200 6496 5731 2 1455 649 304 120 11 chr11 114122317 114122600 -7721256 + RMER15 LTR ERVL 248 561 -14 2 1455 388 311 107 21 chr11 114122622 114122809 -7721047 + MLT1H LTR MaLR 347 549 0 2 1455 1047 235 14 5 chr11 114123786 114124008 -7719848 - ID_B1 SINE B4 0 224 1 2 1455 402 263 0 48 chr11 114124106 114124210 -7719646 + PB1 SINE Alu 1 99 -28 2 1455 265 267 123 77 chr11 114124210 114124236 -7719620 + ID_B1 SINE B4 82 217 -7 2 1455 482 276 68 56 chr11 114124236 114124397 -7719459 - B3 SINE B2 0 216 54 2 1455 207 0 0 0 chr11 114124432 114124455 -7719401 + (GTGTG)n Simple_repeat Simple_repeat 3 25 0 2 1455 444 277 23 8 chr11 114124455 114124586 -7719270 + B1F SINE Alu 15 147 -2 2 1455 320 313 10 10 chr11 114124806 114124906 -7718950 + RMER15 LTR ERVL 462 561 -14 2 1455 1080 262 107 8 chr11 114125048 114125414 -7718442 - Lx8 LINE L1 0 7473 7072 2 1455 447 19 0 0 chr11 114125445 114125497 -7718359 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1455 369 0 0 0 chr11 114125497 114125538 -7718318 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1455 229 200 0 0 chr11 114125543 114125588 -7718268 - Lx8 LINE L1 -527 6946 6902 2 1455 1858 284 117 2 chr11 114125621 114125656 -7718200 - Lx8 LINE L1 -677 6796 6748 2 1455 194 0 0 37 chr11 114125656 114125683 -7718173 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2 1455 1858 284 117 2 chr11 114125683 114126176 -7717680 - Lx8 LINE L1 -726 6747 6207 2 1455 531 0 0 0 chr11 114126186 114126245 -7717611 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 1455 237 370 86 18 chr11 114126375 114126595 -7717261 + MIRb SINE MIR 26 260 -8 2 1455 754 39 10 10 chr11 114127009 114127112 -7716744 + (TCC)n Simple_repeat Simple_repeat 2 104 0 2 1455 462 290 113 0 chr11 114127398 114127522 -7716334 + RSINE1 SINE B4 2 139 -26 2 1455 23 0 0 0 chr11 114127522 114127545 -7716311 + AT_rich Low_complexity Low_complexity 1 23 0 2 1455 234 0 0 0 chr11 114127545 114127571 -7716285 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1455 225 159 0 0 chr11 114127647 114127691 -7716165 + (TTA)n Simple_repeat Simple_repeat 3 46 0 2 1455 230 56 28 0 chr11 114127718 114127754 -7716102 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1455 354 350 20 27 chr11 114127765 114127912 -7715944 - RSINE1 SINE B4 -18 147 2 2 1455 686 201 178 0 chr11 114128209 114128378 -7715478 - ORR1D2 LTR MaLR -7 363 165 2 1455 324 0 0 0 chr11 114128389 114128425 -7715431 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1455 702 231 0 20 chr11 114128425 114128571 -7715285 - B1F SINE Alu -5 144 2 2 1455 911 294 46 59 chr11 114128750 114129100 -7714756 - Charlie4a DNA MER1_type -93 415 78 2 1455 369 0 0 0 chr11 114129100 114129141 -7714715 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1455 911 278 63 24 chr11 114129141 114129217 -7714639 - Charlie4a DNA MER1_type -431 77 4 2 1455 839 235 26 16 chr11 114129633 114129823 -7714033 + B3A SINE B2 5 196 -2 2 1455 2553 131 92 183 chr11 114129840 114130225 -7713631 + RMER4B LTR ERVK 1 335 -250 2 1455 1032 134 8 0 chr11 114130225 114130402 -7713454 + (GGA)n Simple_repeat Simple_repeat 1 182 -187 2 1455 1032 134 8 0 chr11 114130411 114130591 -7713265 + (GGA)n Simple_repeat Simple_repeat 183 369 0 2 1455 2553 131 92 183 chr11 114130591 114130839 -7713017 + RMER4B LTR ERVK 336 585 0 2 1455 699 281 81 27 chr11 114132522 114132782 -7711074 + B4 SINE B4 5 278 -14 2 1455 239 337 22 0 chr11 114133132 114133221 -7710635 + L3 LINE CR1 4310 4400 -89 2 1455 201 238 210 12 chr11 114133259 114133340 -7710516 - MIR SINE MIR -85 177 81 2 1455 895 255 9 9 chr11 114133560 114133774 -7710082 + ID_B1 SINE B4 10 223 -1 2 1455 385 217 0 0 chr11 114133856 114133925 -7709931 - ID4 SINE ID -13 70 2 2 1455 348 268 10 30 chr11 114134021 114134121 -7709735 + MLT1A LTR MaLR 276 373 -1 2 1455 441 0 0 0 chr11 114134352 114134401 -7709455 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1455 259 318 27 27 chr11 114135091 114135239 -7708617 + LTR16E1 LTR ERVL 322 516 -22 2 1455 444 341 42 91 chr11 114135234 114135595 -7708261 - ORR1E LTR MaLR -12 347 5 2 1455 4614 164 30 19 chr11 114135713 114135991 -7707865 - RMER13B LTR ERVK -38 870 593 2 1455 198 0 0 0 chr11 114135991 114136013 -7707843 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 1455 4614 164 30 19 chr11 114136013 114136594 -7707262 - RMER13B LTR ERVK -316 592 3 2 1455 256 376 107 0 chr11 114137284 114137489 -7706367 - MIR SINE MIR -6 256 30 2 1455 1205 275 108 35 chr11 114137620 114138083 -7705773 + MLT2B4 LTR ERVL 4 500 -56 2 1455 414 0 0 0 chr11 114138096 114138142 -7705714 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1455 342 0 0 0 chr11 114138142 114138179 -7705677 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1455 272 322 73 29 chr11 114138672 114138846 -7705010 - MIRc SINE MIR -97 179 2 2 1455 827 277 114 11 chr11 114140482 114140745 -7703111 + RLTR28 LTR ERVL 5 294 -230 2 1455 306 0 0 0 chr11 114141386 114141420 -7702436 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1455 246 128 0 0 chr11 114141420 114141458 -7702398 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1455 365 330 18 0 chr11 114143221 114143330 -7700526 - ID_B1 SINE B4 -3 221 111 2 1455 23 0 0 0 chr11 114143904 114143927 -7699929 + GC_rich Low_complexity Low_complexity 1 23 0 2 1455 211 89 0 62 chr11 114144340 114144388 -7699468 + C-rich Low_complexity Low_complexity 6 50 0 2 1455 22 0 0 0 chr11 114144602 114144624 -7699232 + GC_rich Low_complexity Low_complexity 1 22 0 2 1455 25 0 0 0 chr11 114144857 114144882 -7698974 + AT_rich Low_complexity Low_complexity 1 25 0 2 1455 265 315 34 0 chr11 114145025 114145114 -7698742 + MLT1D LTR MaLR 299 390 -115 2 1455 245 340 10 49 chr11 114145085 114145187 -7698669 + MLT1D LTR MaLR 504 601 -23 2 1455 409 285 0 68 chr11 114145629 114145776 -7698080 - MER5A1 DNA MER1_type -14 152 16 2 1455 849 220 43 9 chr11 114146680 114146891 -7696965 + MER20 DNA MER1_type 2 219 0 2 1455 275 238 12 59 chr11 114147582 114147667 -7696189 - MIRc SINE MIR -110 158 78 3 1455 225 0 0 0 chr11 114147667 114147692 -7696164 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1455 203 318 30 0 chr11 114147775 114147841 -7696015 + MER5A DNA MER1_type 7 74 -115 3 1455 1000 249 52 26 chr11 114148052 114148324 -7695532 + B4A SINE B4 4 282 -10 3 1455 535 316 0 12 chr11 114149657 114149849 -7694007 + ORR1E LTR MaLR 3 187 -197 3 1455 299 250 28 19 chr11 114149849 114149955 -7693901 + CT-rich Low_complexity Low_complexity 2 108 0 3 1455 334 239 162 18 chr11 114150008 114150119 -7693737 + ORR1E LTR MaLR 249 375 -4 3 1455 446 339 11 28 chr11 114150425 114150601 -7693255 - MER58A DNA MER1_type -1 223 51 3 1455 635 118 11 53 chr11 114151567 114151755 -7692101 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1455 741 121 39 26 chr11 114151787 114152093 -7691763 + (CA)n Simple_repeat Simple_repeat 1 310 0 3 1455 773 235 171 17 chr11 114152334 114152568 -7691288 + B4A SINE B4 1 270 -22 3 1455 495 200 4 39 chr11 114153583 114153839 -7690017 + (TATG)n Simple_repeat Simple_repeat 1 246 0 3 1455 559 274 22 7 chr11 114153948 114154084 -7689772 - RSINE1 SINE B4 -16 149 12 3 1455 340 274 61 17 chr11 114154097 114154212 -7689644 - B1F SINE Alu -9 140 21 3 1455 566 49 0 12 chr11 114154528 114154611 -7689245 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1455 425 287 33 77 chr11 114154623 114154804 -7689052 - B4 SINE B4 -52 240 68 3 1455 268 280 53 11 chr11 114156024 114156118 -7687738 + MER5A DNA MER1_type 31 128 -61 3 1455 360 0 0 0 chr11 114156236 114156276 -7687580 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1455 185 213 21 0 chr11 114156426 114156473 -7687383 + L3 LINE CR1 4320 4367 -122 3 1455 431 280 179 7 chr11 114157097 114157388 -7686468 - L1MA9 LINE L1 -11 6301 5961 3 1455 1035 25 0 0 chr11 114157395 114157517 -7686339 + (TTCTC)n Simple_repeat Simple_repeat 1 122 0 3 1455 1244 89 0 6 chr11 114157520 114157701 -7686155 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 3 1455 982 98 0 13 chr11 114157701 114157856 -7686000 + (TCCCC)n Simple_repeat Simple_repeat 5 157 0 3 1455 216 220 60 0 chr11 114157861 114157911 -7685945 - PB1D7 SINE Alu -1 119 67 3 1455 409 281 83 0 chr11 114157867 114157988 -7685868 - ID_B1 SINE B4 -7 217 87 3 1455 243 248 104 47 chr11 114158984 114159090 -7684766 + C573_MM Other Other 48 159 -363 3 1455 361 270 198 22 chr11 114159109 114159291 -7684565 - RMER15 LTR ERVL -15 560 347 3 1455 607 298 87 81 chr11 114159813 114160157 -7683699 - ORR1E LTR MaLR -1 358 13 3 1455 957 163 0 0 chr11 114160896 114161074 -7682782 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 3 1455 240 330 58 17 chr11 114163438 114163558 -7680298 - L2c LINE L2 0 3387 3263 3 1456 636 228 46 41 chr11 114163816 114163857 -7679999 - B3A SINE B2 0 198 161 3 1456 549 120 0 0 chr11 114163857 114163949 -7679907 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1456 636 228 46 41 chr11 114163949 114164104 -7679752 - B3A SINE B2 -38 160 1 3 1456 457 253 40 130 chr11 114164548 114164584 -7679272 + B4A SINE B4 61 221 -71 3 1456 1103 43 0 0 chr11 114164584 114164725 -7679131 + B1_Mus1 SINE Alu 2 142 -6 3 1456 801 114 0 0 chr11 114164727 114164859 -7678997 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 3 1456 806 334 32 73 chr11 114165221 114165631 -7678225 - MLT1G3 LTR MaLR -7 588 196 3 1456 243 0 0 0 chr11 114165644 114165671 -7678185 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1456 1420 97 16 0 chr11 114165691 114165877 -7677979 - B2_Mm2 SINE B2 -6 189 1 3 1456 274 253 62 0 chr11 114165881 114165969 -7677887 - MLT1G3 LTR MaLR -388 207 65 3 1456 994 144 0 11 chr11 114165994 114166176 -7677680 + GA-rich Low_complexity Low_complexity 1 180 0 3 1456 263 0 81 0 chr11 114166176 114166213 -7677643 + (GGGAGA)n Simple_repeat Simple_repeat 5 44 0 3 1456 591 53 0 0 chr11 114166213 114166288 -7677568 + (GAGAA)n Simple_repeat Simple_repeat 1 75 0 3 1456 795 230 69 64 chr11 114166391 114166609 -7677247 + ID_B1 SINE B4 4 222 -2 3 1456 181 171 71 24 chr11 114166643 114166685 -7677171 - L2b LINE L2 -13 3362 3319 3 1456 184 327 127 45 chr11 114167204 114167361 -7676495 - L3 LINE CR1 -115 4374 4205 3 1456 252 185 0 0 chr11 114167890 114167944 -7675912 + (TTCA)n Simple_repeat Simple_repeat 1 54 0 3 1456 237 57 29 0 chr11 114168500 114168535 -7675321 + ID_B1 SINE B4 188 223 -1 3 1456 696 45 0 0 chr11 114168537 114168625 -7675231 + (CA)n Simple_repeat Simple_repeat 2 89 0 3 1456 348 227 13 39 chr11 114169012 114169090 -7674766 + ID4 SINE ID 8 83 0 3 1456 671 275 124 16 chr11 114169094 114169279 -7674577 + ID_B1 SINE B4 2 206 -18 3 1456 243 0 0 0 chr11 114169288 114169315 -7674541 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1456 1487 257 25 22 chr11 114171026 114171388 -7672468 + MTE2b LTR MaLR 1 363 -16 3 1456 795 332 60 63 chr11 114172600 114173030 -7670826 - MLT1C LTR MaLR 0 467 39 3 1456 1398 249 15 51 chr11 114173119 114173509 -7670347 + MTEb LTR MaLR 1 376 -3 3 1456 1075 224 5 0 chr11 114173627 114173841 -7670015 + B3 SINE B2 2 216 0 3 1456 30 27 0 0 chr11 114173841 114173878 -7669978 + AT_rich Low_complexity Low_complexity 1 37 0 3 1456 656 271 149 54 chr11 114174536 114174778 -7669078 - B4A SINE B4 -27 265 1 3 1456 426 238 12 0 chr11 114174868 114174948 -7668908 - ID_B1 SINE B4 -48 176 96 3 1456 356 254 94 0 chr11 114175655 114175756 -7668100 + PB1D10 SINE Alu 1 115 -5 3 1456 332 259 0 9 chr11 114175759 114175868 -7667988 + GA-rich Low_complexity Low_complexity 1 108 0 3 1456 916 154 5 9 chr11 114175949 114176176 -7667680 + CT-rich Low_complexity Low_complexity 1 225 0 3 1456 483 257 28 0 chr11 114176205 114176314 -7667542 - PB1D10 SINE Alu -5 112 1 3 1456 307 310 25 42 chr11 114176664 114176782 -7667074 - MIR SINE MIR -39 223 108 3 1456 486 234 186 0 chr11 114176823 114176947 -7666909 + RSINE1 SINE B4 2 148 -17 3 1456 192 77 0 0 chr11 114177202 114177228 -7666628 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 3 1456 367 304 128 25 chr11 114177601 114177797 -7666059 - L2a LINE L2 -6 3420 3205 3 1456 371 325 139 25 chr11 114177808 114178010 -7665846 - LTR33 LTR ERVL 0 515 291 3 1456 669 246 91 30 chr11 114178077 114178274 -7665582 + ID_B1 SINE B4 2 210 -14 3 1456 211 318 0 15 chr11 114178282 114178349 -7665507 + GA-rich Low_complexity Low_complexity 5 70 0 3 1456 219 283 0 0 chr11 114178289 114178335 -7665521 + polypurine Low_complexity Low_complexity 1 46 0 3 1456 223 292 15 15 chr11 114178519 114178585 -7665271 - L2a LINE L2 -246 3180 3115 3 1456 1147 302 104 35 chr11 114179156 114179674 -7664182 + MER77 LTR ERVL 54 607 0 3 1456 390 93 0 0 chr11 114180348 114180402 -7663454 - ORR1A1-int LTR MaLR -134 1829 1776 3 1456 2823 61 0 3 chr11 114180407 114180754 -7663102 - ORR1A1 LTR MaLR 0 346 1 3 1456 391 339 38 38 chr11 114180783 114180967 -7662889 + MLT1E2 LTR MaLR 365 548 -79 3 1456 197 330 10 81 chr11 114181006 114181105 -7662751 - L4 LINE RTE -787 1242 1151 3 1456 489 293 121 46 chr11 114182129 114182369 -7661487 - RMER15 LTR ERVL -2 573 316 3 1456 399 113 0 0 chr11 114183020 114183082 -7660774 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1456 287 278 200 0 chr11 114184425 114184515 -7659341 - MLT1I LTR MaLR -137 274 167 3 1456 514 320 22 11 chr11 114184540 114184720 -7659136 + MLT1A1 LTR MaLR 181 362 -46 3 1456 334 291 201 102 chr11 114184742 114185016 -7658840 + B4A SINE B4 1 288 -4 3 1456 207 0 0 0 chr11 114185039 114185062 -7658794 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1456 705 323 42 21 chr11 114185404 114185746 -7658110 + MLT1A1 LTR MaLR 1 395 -13 3 1456 254 279 237 22 chr11 114186007 114186146 -7657710 - MIRb SINE MIR -79 189 21 3 1456 522 258 298 28 chr11 114186945 114187160 -7656696 + B4 SINE B4 2 274 -18 3 1456 360 0 0 0 chr11 114187193 114187233 -7656623 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1456 312 388 103 23 chr11 114187242 114187456 -7656400 + HAL1-3A_ME LINE L1 1975 2205 -653 3 1456 963 236 51 0 chr11 114187492 114187687 -7656169 + B3 SINE B2 8 212 -4 3 1456 473 263 0 6 chr11 114187815 114187991 -7655865 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1456 384 300 108 32 chr11 114188283 114188545 -7655311 - L1MC3 LINE L1 -169 7826 7343 3 1456 3881 58 16 90 chr11 114188729 114189282 -7654574 - RLTR1B LTR ERV1 0 512 1 3 1456 339 325 90 34 chr11 114189511 114189673 -7654183 + MIRc SINE MIR 9 166 -96 3 1456 602 261 22 7 chr11 114189839 114189978 -7653878 + ID_B1 SINE B4 84 224 0 3 1456 22 0 0 0 chr11 114190151 114190173 -7653683 + AT_rich Low_complexity Low_complexity 1 22 0 3 1456 256 272 153 0 chr11 114190295 114190412 -7653444 + MIRc SINE MIR 15 150 -118 3 1456 1624 244 137 0 chr11 114190604 114190781 -7653075 - RMER20A LTR ERVK -21 495 275 3 1456 3137 39 28 28 chr11 114190781 114191181 -7652675 + MTB LTR MaLR 1 400 0 3 1456 1624 244 137 0 chr11 114191181 114191426 -7652430 - RMER20A LTR ERVK -242 274 16 3 1456 461 226 46 19 chr11 114192122 114192230 -7651626 + PB1D7 SINE Alu 2 112 -8 3 1456 881 259 13 95 chr11 114192237 114192553 -7651303 + B4 SINE B4 3 292 0 3 1456 648 232 0 0 chr11 114192568 114192745 -7651111 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1456 281 320 30 60 chr11 114193409 114193542 -7650314 + MER117 DNA MER1_type 63 191 -6 3 1456 198 103 0 0 chr11 114193806 114193835 -7650021 + (G)n Simple_repeat Simple_repeat 1 29 0 3 1456 252 0 0 0 chr11 114193909 114193937 -7649919 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1456 1193 58 0 0 chr11 114193937 114194076 -7649780 - B1_Mus1 SINE Alu -9 139 1 3 1456 2318 144 7 76 chr11 114194076 114194496 -7649360 - ORR1B1 LTR MaLR -3 391 1 3 1456 267 229 72 6 chr11 114194548 114194623 -7649233 + MIR SINE MIR 103 184 -92 3 1456 2146 145 65 206 chr11 114195100 114195716 -7648140 + RLTR24 LTR ERV1 1 529 0 4 1456 247 208 0 40 chr11 114196314 114196364 -7647492 + ID4 SINE ID 36 83 0 4 1456 363 191 13 63 chr11 114196366 114196670 -7647186 + GA-rich Low_complexity Low_complexity 1 288 0 4 1456 258 229 184 68 chr11 114198371 114198474 -7645382 + LTR85c LTR Gypsy? 96 210 -613 4 1456 614 167 8 32 chr11 114198635 114198759 -7645097 + RMER5 LTR ERV1 5 125 -409 4 1456 234 180 0 0 chr11 114199161 114199222 -7644634 + CT-rich Low_complexity Low_complexity 1 61 0 4 1456 1682 190 121 13 chr11 114199524 114199897 -7643959 + RMER5 LTR ERV1 122 534 0 4 1456 230 284 34 76 chr11 114200781 114200899 -7642957 + ORR1D1 LTR MaLR 260 372 -2 4 1456 315 284 71 27 chr11 114201110 114201334 -7642522 + L1M5 LINE L1 5254 5487 -637 4 1456 1216 174 27 5 chr11 114201799 114202019 -7641837 + URR1B DNA MER1_type 1 225 0 4 1456 292 326 92 28 chr11 114202059 114202125 -7641731 + B4 SINE B4 125 192 -100 4 1456 2312 96 45 0 chr11 114202125 114202438 -7641418 - ORR1A2 LTR MaLR 0 327 1 4 1456 292 328 66 19 chr11 114202438 114202548 -7641308 + B4 SINE B4 78 275 -17 4 1456 312 27 0 0 chr11 114202576 114202613 -7641243 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1456 430 284 285 68 chr11 114203024 114203430 -7640426 - MLT1H2 LTR MaLR 0 549 56 4 1456 531 200 165 0 chr11 114203725 114203840 -7640016 - ID_B1 SINE B4 -5 219 86 4 1456 236 299 0 82 chr11 114204511 114204584 -7639272 + PB1D9 SINE Alu 1 67 -53 4 1456 575 252 9 0 chr11 114204581 114204696 -7639160 + ID_B1 SINE B4 90 205 -19 4 1456 1170 91 0 0 chr11 114204707 114204872 -7638984 + (GA)n Simple_repeat Simple_repeat 1 165 0 4 1456 462 148 49 0 chr11 114204872 114204989 -7638867 + GA-rich Low_complexity Low_complexity 6 128 0 4 1456 574 264 145 61 chr11 114205693 114205907 -7637949 - B4 SINE B4 -37 255 24 4 1456 376 207 0 17 chr11 114206113 114206231 -7637625 + (TG)n Simple_repeat Simple_repeat 1 116 0 4 1456 420 195 23 12 chr11 114206280 114206451 -7637405 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1456 270 252 0 0 chr11 114206507 114206622 -7637234 + (TG)n Simple_repeat Simple_repeat 1 115 0 4 1456 481 168 19 0 chr11 114207876 114207983 -7635873 + CT-rich Low_complexity Low_complexity 1 109 0 4 1456 807 188 74 47 chr11 114208278 114208468 -7635388 - B3A SINE B2 0 198 4 4 1456 347 213 33 53 chr11 114209053 114209148 -7634708 - ID4_ SINE ID -55 97 2 4 1456 312 329 20 54 chr11 114209576 114209600 -7634256 + ID_B1 SINE B4 79 219 -3 4 1456 409 292 33 16 chr11 114209600 114209722 -7634134 + B1F SINE Alu 21 144 -5 4 1456 289 279 15 0 chr11 114209742 114209810 -7634046 + ID2 SINE ID 2 70 -13 4 1456 582 41 0 0 chr11 114209827 114209900 -7633956 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1456 621 290 100 32 chr11 114210118 114210143 -7633713 + L1MC3 LINE L1 7390 7414 -371 4 1456 1191 72 0 0 chr11 114210143 114210407 -7633449 + (CA)n Simple_repeat Simple_repeat 1 264 0 4 1456 621 290 100 32 chr11 114210407 114210750 -7633106 + L1MC3 LINE L1 7415 7785 0 4 1456 220 301 0 67 chr11 114211228 114211317 -7632539 + L2a LINE L2 3322 3404 -22 4 1456 254 50 50 0 chr11 114211342 114211382 -7632474 - ID4_ SINE ID -39 44 3 4 1456 198 0 0 0 chr11 114211420 114211442 -7632414 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 4 1456 803 226 10 62 chr11 114211457 114211650 -7632206 - B4 SINE B4 -60 232 50 4 1456 317 295 10 69 chr11 114212137 114212239 -7631617 - RSINE1 SINE B4 -57 108 13 4 1456 362 346 111 9 chr11 114212529 114212745 -7631111 + L1MEd LINE L1 431 668 -5451 4 1456 244 269 10 41 chr11 114212828 114212925 -7630931 + L1MEd LINE L1 1109 1202 -4917 4 1456 298 279 8 17 chr11 114213092 114213342 -7630514 + (TATG)n Simple_repeat Simple_repeat 1 247 0 4 1456 1239 221 29 25 chr11 114213348 114213626 -7630230 - B4A SINE B4 -12 280 2 4 1456 317 312 102 72 chr11 114213726 114214019 -7629837 + L1MEc LINE L1 261 562 -5861 4 1456 670 309 36 68 chr11 114214344 114214380 -7629476 + B4A SINE B4 2 37 -255 4 1456 2641 49 3 58 chr11 114214380 114214726 -7629130 - ORR1A2 LTR MaLR 0 327 1 4 1456 670 309 36 68 chr11 114214726 114214967 -7628889 + B4A SINE B4 38 270 -22 4 1456 439 318 129 42 chr11 114215093 114215549 -7628307 + L1MEc LINE L1 865 1360 -5063 4 1456 25 0 0 0 chr11 114215606 114215631 -7628225 + AT_rich Low_complexity Low_complexity 1 25 0 4 1456 511 329 6 37 chr11 114215743 114215907 -7627949 - ID_B1 SINE B4 -11 213 55 4 1456 453 81 0 0 chr11 114215921 114215983 -7627873 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1456 282 262 0 0 chr11 114215989 114216069 -7627787 - L1MA8 LINE L1 -163 6128 6049 4 1456 767 261 53 15 chr11 114216251 114216457 -7627399 + B3 SINE B2 2 215 -1 4 1456 462 36 0 0 chr11 114216590 114216646 -7627210 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1456 635 354 60 25 chr11 114216713 114217432 -7626424 + L1MEc LINE L1 2292 3035 -3987 4 1456 282 337 123 112 chr11 114217496 114217683 -7626173 - ID_B1 SINE B4 -20 272 80 4 1456 419 21 0 0 chr11 114217679 114217727 -7626129 + ORR1A4 LTR MaLR 282 329 0 4 1456 340 300 29 20 chr11 114217732 114217834 -7626022 + B4A SINE B4 46 148 -144 4 1456 2071 123 9 33 chr11 114217953 114218282 -7625574 - ORR1A4 LTR MaLR -8 321 1 4 1456 37 0 0 0 chr11 114218296 114218333 -7625523 + AT_rich Low_complexity Low_complexity 1 37 0 4 1456 835 211 19 81 chr11 114218546 114218757 -7625099 + B3A SINE B2 1 198 0 4 1456 921 227 35 20 chr11 114219578 114219780 -7624076 + B3 SINE B2 1 205 -11 4 1456 1083 213 147 19 chr11 114220170 114220429 -7623427 + B4A SINE B4 1 292 0 4 1456 732 123 0 48 chr11 114220467 114220655 -7623201 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1456 318 314 105 41 chr11 114220655 114220950 -7622906 + L1MEc LINE L1 4059 4372 -2569 4 1456 351 297 118 17 chr11 114221295 114221473 -7622383 + L1ME3B LINE L1 1841 2036 -4206 4 1456 619 295 76 5 chr11 114221486 114221697 -7622159 + B4A SINE B4 5 230 -62 4 1456 600 238 5 139 chr11 114221826 114222041 -7621815 + B4A SINE B4 106 291 -1 4 1456 981 226 4 139 chr11 114222283 114222550 -7621306 + MTD LTR MaLR 12 242 -177 4 1456 4230 122 48 25 chr11 114222553 114223301 -7620555 + RMER17A LTR ERVK 1 751 0 4 1456 391 229 183 14 chr11 114223301 114223439 -7620417 + MTD LTR MaLR 240 401 -18 4 1456 212 364 0 0 chr11 114223522 114223577 -7620279 + ID4_ SINE ID 3 57 -26 4 1456 351 344 47 40 chr11 114223621 114223942 -7619914 + L1ME3B LINE L1 2309 2631 -3515 4 1456 597 241 31 1 chr11 114224071 114224209 -7619647 + B1_Mur1 SINE Alu 3 142 -7 4 1456 414 0 0 0 chr11 114224215 114224261 -7619595 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1456 196 161 35 18 chr11 114224295 114224352 -7619504 + G-rich Low_complexity Low_complexity 4 61 0 4 1456 700 220 231 8 chr11 114224630 114224864 -7618992 + B4A SINE B4 1 286 -6 4 1456 209 176 0 0 chr11 114224876 114224910 -7618946 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1456 384 305 133 29 chr11 114224982 114225357 -7618499 + L1ME3B LINE L1 3282 3695 -2451 4 1456 289 294 15 189 chr11 114225659 114225860 -7617996 + MLT1B LTR MaLR 1 166 -224 4 1456 659 261 138 36 chr11 114225869 114226259 -7617597 + Lx9 LINE L1 7215 7644 0 4 1456 367 324 78 6 chr11 114226263 114226443 -7617413 + MLT1B LTR MaLR 167 359 -31 4 1456 474 278 16 88 chr11 114226713 114226906 -7616950 + B3A SINE B2 4 182 -16 4 1456 283 246 15 15 chr11 114226942 114227008 -7616848 + B4 SINE B4 215 280 -12 4 1456 597 152 0 0 chr11 114227011 114227116 -7616740 + GA-rich Low_complexity Low_complexity 1 105 0 4 1456 816 269 37 28 chr11 114227502 114227720 -7616136 + ID_B1 SINE B4 5 224 0 4 1456 261 232 0 18 chr11 114227765 114227822 -7616034 - MER5A1 DNA MER1_type -48 118 63 4 1456 792 300 77 40 chr11 114227853 114228350 -7615506 + L1ME3B LINE L1 5688 6202 -38 4 1456 387 0 0 0 chr11 114228787 114228830 -7615026 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1456 243 275 14 0 chr11 114229413 114229482 -7614374 + C-rich Low_complexity Low_complexity 4 73 0 4 1456 373 314 16 0 chr11 114229715 114229832 -7614024 + MIR SINE MIR 65 191 -77 4 1456 358 239 126 0 chr11 114230474 114230565 -7613291 + PB1D10 SINE Alu 1 104 -16 4 1456 603 128 8 25 chr11 114230588 114230650 -7613206 + polypurine Low_complexity Low_complexity 3 64 0 4 1456 1107 95 6 16 chr11 114230650 114230832 -7613024 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1456 603 128 8 25 chr11 114230832 114230856 -7613000 + polypurine Low_complexity Low_complexity 65 88 0 4 1456 1039 117 6 11 chr11 114230856 114231037 -7612819 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1456 603 128 8 25 chr11 114231037 114231069 -7612787 + polypurine Low_complexity Low_complexity 89 120 0 4 1456 289 286 7 29 chr11 114231078 114231215 -7612641 + GA-rich Low_complexity Low_complexity 3 136 0 4 1456 453 62 0 0 chr11 114232911 114232976 -7610880 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 4 1456 270 73 0 0 chr11 114233071 114233112 -7610744 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1456 423 0 0 0 chr11 114233165 114233212 -7610644 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1456 666 84 0 0 chr11 114233212 114233318 -7610538 + (GA)n Simple_repeat Simple_repeat 2 108 0 4 1456 353 135 27 0 chr11 114233375 114233449 -7610407 + (CAGAGA)n Simple_repeat Simple_repeat 4 79 0 4 1456 790 272 80 133 chr11 114233540 114233938 -7609918 + MTE2a LTR MaLR 1 377 -2 4 1456 408 20 0 0 chr11 114234022 114234071 -7609785 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1456 623 289 82 34 chr11 114234292 114234461 -7609395 - MLT1D LTR MaLR -1 504 328 4 1456 180 111 0 0 chr11 114234461 114234488 -7609368 + (CCTTG)n Simple_repeat Simple_repeat 2 28 0 4 1456 623 288 862 27 chr11 114234488 114234563 -7609293 - MLT1D LTR MaLR -178 327 190 4 1456 729 34 0 0 chr11 114234563 114234651 -7609205 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 1456 510 283 166 6 chr11 114234651 114234813 -7609043 - MLT1D LTR MaLR -316 189 1 4 1456 378 0 0 0 chr11 114236046 114236088 -7607768 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1456 351 0 0 0 chr11 114236088 114236126 -7607730 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1456 909 287 8 71 chr11 114236126 114236392 -7607464 - B4 SINE B4 -23 269 21 4 1456 286 310 0 0 chr11 114236392 114236463 -7607393 - MER2 DNA MER2_type -274 71 1 4 1456 345 24 0 0 chr11 114236533 114236575 -7607281 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1456 303 364 86 0 chr11 114236637 114236799 -7607057 - L1MC4a LINE L1 -1977 5905 5730 4 1456 240 312 11 11 chr11 114237638 114237732 -7606124 + MLT1A LTR MaLR 82 175 -199 4 1456 426 309 79 59 chr11 114237739 114237993 -7605863 + B4A SINE B4 51 273 -19 5 1456 186 103 0 0 chr11 114238490 114238519 -7605337 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1456 1232 235 66 99 chr11 114238631 114239023 -7604833 + MTE2a LTR MaLR 1 379 0 5 1456 342 0 0 0 chr11 114239086 114239124 -7604732 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1456 212 264 19 0 chr11 114239574 114239627 -7604229 + GA-rich Low_complexity Low_complexity 3 56 0 5 1456 778 256 41 50 chr11 114239801 114240019 -7603837 - B3 SINE B2 0 216 1 5 1456 21 0 0 0 chr11 114240525 114240546 -7603310 + GC_rich Low_complexity Low_complexity 1 21 0 5 1456 250 336 57 9 chr11 114240585 114240690 -7603166 + MamRep434 DNA TcMar 313 422 -4 5 1456 627 250 36 7 chr11 114241346 114241483 -7602373 + B4 SINE B4 103 243 -49 5 1456 450 0 0 0 chr11 114241498 114241548 -7602308 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1456 262 264 0 0 chr11 114241548 114241601 -7602255 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1456 754 276 218 0 chr11 114241602 114241841 -7602015 - B4A SINE B4 -1 291 1 5 1456 2686 68 0 3 chr11 114241856 114242198 -7601658 - L1Md_F2 LINE L1 -12 6570 6230 5 1456 722 179 18 6 chr11 114242269 114242323 -7601533 + polypurine Low_complexity Low_complexity 1 54 0 5 1456 1092 106 0 16 chr11 114242323 114242505 -7601351 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 5 1456 722 179 18 6 chr11 114242505 114242619 -7601237 + polypurine Low_complexity Low_complexity 55 171 0 5 1456 860 149 6 17 chr11 114242644 114242821 -7601035 + GA-rich Low_complexity Low_complexity 4 178 0 5 1456 266 322 73 60 chr11 114243198 114243370 -7600486 - MIRc SINE MIR -69 199 14 5 1456 1687 207 75 40 chr11 114243432 114243833 -7600023 + MTD LTR MaLR 5 405 -14 5 1456 229 277 8 0 chr11 114244862 114244990 -7598866 + (CA)n Simple_repeat Simple_repeat 1 129 0 5 1456 281 314 17 34 chr11 114244945 114245187 -7598669 + (CATATA)n Simple_repeat Simple_repeat 1 237 0 5 1456 3233 44 0 0 chr11 114246079 114246464 -7597392 + L1Md_T LINE L1 6198 6582 0 5 1456 213 39 0 0 chr11 114246547 114246573 -7597283 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1456 324 317 56 14 chr11 114246884 114247028 -7596828 - RodERV21-int LTR ERV1 -462 4529 4380 5 1456 662 0 13 0 chr11 114247330 114247408 -7596448 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 5 1456 1236 183 14 23 chr11 114248045 114248263 -7595593 + B3 SINE B2 1 216 0 5 1456 1710 152 25 69 chr11 114248622 114248940 -7594916 + ORR1A4 LTR MaLR 1 304 -25 5 1456 520 186 0 0 chr11 114249334 114249419 -7594437 - ORR1D1 LTR MaLR -2 372 288 5 1456 2242 123 3 0 chr11 114249419 114249737 -7594119 + ORR1A2 LTR MaLR 1 319 -8 5 1456 1370 172 68 21 chr11 114249740 114250020 -7593836 - ORR1D1 LTR MaLR -81 293 1 5 1456 207 243 0 111 chr11 114250623 114250813 -7593043 + GA-rich Low_complexity Low_complexity 6 174 0 5 1456 282 281 12 88 chr11 114251074 114251234 -7592622 - MER52-int LTR ERV1 -3178 3913 3766 5 1456 287 277 24 32 chr11 114252366 114252489 -7591367 - RodERV21-int LTR ERV1 -3237 1754 1633 5 1456 180 97 0 0 chr11 114253829 114253860 -7589996 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 1456 786 112 0 32 chr11 114253869 114254054 -7589802 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 1456 212 240 0 20 chr11 114254294 114254345 -7589511 + C-rich Low_complexity Low_complexity 6 55 0 5 1456 214 31 14 99 chr11 114254662 114254733 -7589123 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1456 2796 186 61 22 chr11 114254901 114255489 -7588367 + RMER19C LTR ERVK 1 611 0 5 1456 592 354 62 12 chr11 114255856 114256113 -7587743 - MER2 DNA MER2_type -65 280 11 5 1456 3422 35 2 17 chr11 114256548 114256954 -7586902 + MTB LTR MaLR 1 400 0 5 1456 208 248 279 29 chr11 114257340 114257444 -7586412 - L2a LINE L2 0 3426 3297 5 1456 213 326 81 40 chr11 114257444 114257459 -7586397 + B4A SINE B4 72 90 -202 5 1456 416 265 8 66 chr11 114257459 114257580 -7586276 + PB1D10 SINE Alu 2 115 -2 5 1456 297 0 0 0 chr11 114258334 114258367 -7585489 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1456 378 0 0 0 chr11 114258367 114258408 -7585448 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1456 661 185 131 0 chr11 114258412 114258542 -7585314 - B3A SINE B2 -45 153 7 5 1456 1192 229 164 6 chr11 114258548 114258865 -7584991 + MTEa LTR MaLR 9 375 -4 5 1456 740 321 94 9 chr11 114259235 114259553 -7584303 - L2 LINE L2 -985 2434 2090 5 1456 282 301 93 75 chr11 114259884 114260142 -7583714 + L2a LINE L2 3146 3383 -4 5 1456 186 133 0 0 chr11 114260656 114260686 -7583170 + (CATG)n Simple_repeat Simple_repeat 3 32 0 5 1456 384 261 0 0 chr11 114260702 114260832 -7583024 + (CA)n Simple_repeat Simple_repeat 1 130 0 5 1456 309 247 0 0 chr11 114260841 114260910 -7582946 - MTEa LTR MaLR -296 83 15 5 1456 298 343 57 43 chr11 114261266 114261476 -7582380 - Charlie18a DNA MER1_type 0 342 130 5 1456 408 206 243 37 chr11 114261607 114261743 -7582113 + RSINE1 SINE B4 2 165 0 5 1456 351 182 50 0 chr11 114261743 114261864 -7581992 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 1456 207 0 0 0 chr11 114261878 114261901 -7581955 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1456 608 299 97 29 chr11 114262399 114262709 -7581147 - ORR1D2 LTR MaLR -1 369 39 5 1456 624 249 0 0 chr11 114262870 114263198 -7580658 + (TG)n Simple_repeat Simple_repeat 1 328 0 5 1456 485 298 147 66 chr11 114263210 114263469 -7580387 - B4A SINE B4 -8 284 5 5 1456 387 0 0 0 chr11 114263582 114263625 -7580231 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1456 546 119 0 0 chr11 114263625 114263708 -7580148 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1456 364 233 6 22 chr11 114264794 114264986 -7578870 + (CA)n Simple_repeat Simple_repeat 1 188 0 5 1456 286 316 17 6 chr11 114265055 114265230 -7578626 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1456 317 289 0 50 chr11 114265719 114265839 -7578017 + MLT1A1 LTR MaLR 295 408 0 5 1456 646 175 24 5 chr11 114266615 114266824 -7577032 + CT-rich Low_complexity Low_complexity 1 213 0 5 1456 923 266 91 70 chr11 114266826 114267298 -7576558 - Lx8 LINE L1 -228 7245 6764 5 1456 528 16 0 0 chr11 114267354 114267415 -7576441 + (GGA)n Simple_repeat Simple_repeat 1 61 0 5 1456 293 200 76 0 chr11 114268809 114268914 -7574942 + (TA)n Simple_repeat Simple_repeat 2 114 0 5 1456 628 227 49 21 chr11 114269120 114269264 -7574592 + MTEa LTR MaLR 1 148 -231 5 1456 525 341 174 77 chr11 114269264 114269562 -7574294 + MT2A LTR ERVL 1 474 -80 5 1456 790 255 20 50 chr11 114269562 114269760 -7574096 - B3A SINE B2 -5 193 2 5 1456 295 341 174 77 chr11 114269760 114269822 -7574034 + MT2A LTR ERVL 475 554 0 5 1456 356 383 71 0 chr11 114269823 114270019 -7573837 - L1MEf LINE L1 -405 6634 6425 5 1456 895 306 45 48 chr11 114270020 114270078 -7573778 + B4A SINE B4 2 54 -238 5 1456 4409 129 49 7 chr11 114270078 114270426 -7573430 - RMER6D LTR ERVK 0 720 370 5 1456 396 0 0 0 chr11 114270426 114270470 -7573386 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1456 4409 129 49 7 chr11 114270470 114270810 -7573046 - RMER6D LTR ERVK -351 369 3 5 1456 895 306 45 48 chr11 114270810 114271043 -7572813 + B4A SINE B4 55 292 0 5 1456 455 270 7 26 chr11 114271109 114271261 -7572595 - L1MEf LINE L1 -595 6429 6281 5 1456 2513 86 9 0 chr11 114271261 114271585 -7572271 + ORR1A2 LTR MaLR 1 327 0 5 1456 4909 128 25 5 chr11 114271585 114272402 -7571454 + ORR1A2-int LTR MaLR 1 833 -959 5 1456 2295 94 12 19 chr11 114272405 114272730 -7571126 + ORR1A2 LTR MaLR 5 327 0 5 1456 437 359 71 35 chr11 114272762 114273328 -7570528 - L1MEf LINE L1 -757 6249 5664 5 1456 258 271 176 0 chr11 114274242 114274327 -7569529 - PB1D10 SINE Alu 0 117 18 5 1456 37 52 0 0 chr11 114274414 114274472 -7569384 + AT_rich Low_complexity Low_complexity 1 58 0 5 1456 426 20 0 0 chr11 114274474 114274525 -7569331 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1456 467 299 79 14 chr11 114274537 114274676 -7569180 - RSINE1 SINE B4 -16 149 2 5 1456 639 98 0 0 chr11 114274682 114274774 -7569082 + (TTTTC)n Simple_repeat Simple_repeat 2 93 0 5 1456 301 255 47 9 chr11 114274784 114274891 -7568965 - L1MEf LINE L1 -1540 5466 5356 5 1456 957 236 124 40 chr11 114274992 114275314 -7568542 + ORR1E LTR MaLR 1 349 -10 5 1456 674 284 66 81 chr11 114275404 114275752 -7568104 + MLT1B LTR MaLR 46 388 -2 5 1456 525 279 107 28 chr11 114275795 114275972 -7567884 - B3A SINE B2 -7 191 1 5 1456 353 280 0 48 chr11 114275981 114276105 -7567751 - L1MEf LINE L1 -4719 2383 2266 5 1456 353 242 75 29 chr11 114276188 114276398 -7567458 - L1MEf LINE L1 -5076 2026 1661 5 1456 320 270 0 51 chr11 114276505 114276583 -7567273 - MER3 DNA MER1_type -105 104 31 5 1456 561 259 170 19 chr11 114278000 114278281 -7565575 - ORR1E LTR MaLR -2 357 33 5 1456 309 273 135 0 chr11 114278411 114278551 -7565305 - B4 SINE B4 -11 281 82 5 1456 1067 171 83 26 chr11 114278516 114278561 -7565295 + ORR1B2 LTR MaLR 127 170 -197 5 1456 459 0 0 0 chr11 114278561 114278612 -7565244 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1456 480 35 0 0 chr11 114278612 114278669 -7565187 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1456 1067 171 83 26 chr11 114278669 114278850 -7565006 + ORR1B2 LTR MaLR 171 366 -1 5 1456 423 316 17 8 chr11 114278855 114278973 -7564883 - B4A SINE B4 -173 119 1 5 1456 289 299 80 29 chr11 114279113 114279149 -7564707 - L1MEf LINE L1 -5400 1702 1662 5 1456 420 20 0 0 chr11 114279149 114279198 -7564658 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1456 289 299 80 29 chr11 114279198 114279299 -7564557 - L1MEf LINE L1 -5441 1661 1558 5 1456 757 320 154 12 chr11 114279534 114279970 -7563886 + Tigger7 DNA MER2_type 158 650 -1841 5 1456 811 188 91 5 chr11 114280140 114280327 -7563529 + B3 SINE B2 14 216 0 5 1456 290 26 0 25 chr11 114280366 114280406 -7563450 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1456 523 293 20 57 chr11 114280440 114280651 -7563205 - B3A SINE B2 -3 195 7 5 1456 273 306 20 0 chr11 114280860 114280958 -7562898 + Tigger7 DNA MER2_type 2386 2485 -6 5 1456 1431 228 32 110 chr11 114280981 114281390 -7562466 + MTE2b LTR MaLR 1 377 -2 5 1456 490 286 109 90 chr11 114281480 114281922 -7561934 - RMER15 LTR ERVL 0 575 1 5 1456 280 385 7 20 chr11 114282321 114282467 -7561389 + MIRb SINE MIR 61 204 -64 5 1456 1522 219 98 26 chr11 114282669 114282999 -7560857 + MTD LTR MaLR 2 363 -56 5 1456 3173 38 5 2 chr11 114282999 114283394 -7560462 + MTA_Mm LTR MaLR 1 396 0 5 1456 1522 219 98 26 chr11 114283394 114283452 -7560404 + MTD LTR MaLR 364 418 -1 5 1456 870 257 8 50 chr11 114283681 114283919 -7559937 + MTE2b LTR MaLR 1 228 -151 5 1456 21 0 0 0 chr11 114284239 114284260 -7559596 + AT_rich Low_complexity Low_complexity 1 21 0 6 1456 271 216 82 72 chr11 114284331 114284466 -7559390 + MTE2b LTR MaLR 228 375 -4 5 1456 687 319 45 78 chr11 114285018 114285351 -7558505 + ORR1E LTR MaLR 2 323 -36 6 1456 1141 104 6 6 chr11 114285517 114285537 -7558319 - B2_Mm2 SINE B2 -20 175 156 6 1456 213 39 0 0 chr11 114285537 114285563 -7558293 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6 1456 1141 104 6 6 chr11 114285563 114285716 -7558140 - B2_Mm2 SINE B2 -40 155 2 6 1456 276 268 72 0 chr11 114285758 114285855 -7558001 - L2a LINE L2 -64 3362 3259 6 1456 607 250 25 104 chr11 114286021 114286308 -7557548 - MTE2a LTR MaLR -116 263 2 6 1456 306 0 0 0 chr11 114287282 114287316 -7556540 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1456 447 19 0 0 chr11 114287498 114287550 -7556306 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1456 673 319 58 68 chr11 114287615 114287908 -7555948 - B4A SINE B4 -1 291 2 6 1456 527 235 15 15 chr11 114289308 114289567 -7554289 + GA-rich Low_complexity Low_complexity 1 259 0 6 1456 401 309 30 18 chr11 114290985 114291150 -7552706 + MIR3 SINE MIR 17 183 -25 6 1456 283 189 95 0 chr11 114291197 114291271 -7552585 - PB1D7 SINE Alu 0 120 40 6 1456 320 250 0 13 chr11 114291273 114291350 -7552506 + L1MC4a LINE L1 6603 6678 -1204 6 1456 374 162 0 13 chr11 114291357 114291432 -7552424 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1456 346 181 0 19 chr11 114291508 114291615 -7552241 + (TG)n Simple_repeat Simple_repeat 1 105 0 6 1456 674 211 49 49 chr11 114291615 114291779 -7552077 - RSINE1 SINE B4 0 165 2 6 1456 641 260 52 23 chr11 114291867 114292040 -7551816 - B4A SINE B4 -105 187 10 6 1456 1196 195 80 0 chr11 114292764 114293015 -7550841 + B4 SINE B4 1 271 -21 6 1456 270 81 0 0 chr11 114293016 114293053 -7550803 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1456 238 310 118 44 chr11 114293117 114293252 -7550604 + Lx8 LINE L1 7176 7320 -153 6 1456 569 339 74 18 chr11 114293517 114293802 -7550054 + Lx9 LINE L1 7076 7376 -268 6 1456 2377 83 6 0 chr11 114293802 114294127 -7549729 - ORR1A2 LTR MaLR 0 327 1 6 1456 184 216 19 19 chr11 114294320 114294372 -7549484 + L3 LINE CR1 2499 2550 -1939 6 1457 229 281 60 12 chr11 114295424 114295507 -7548349 + B4 SINE B4 1 87 -205 6 1457 1014 167 3 0 chr11 114295507 114295799 -7548057 + GA-rich Low_complexity Low_complexity 1 293 0 6 1457 588 230 114 12 chr11 114295805 114295972 -7547884 + B4 SINE B4 91 274 -18 6 1457 2798 147 118 0 chr11 114297192 114297672 -7546184 - RMER4B LTR ERVK -8 577 43 6 1457 459 0 0 0 chr11 114297672 114297723 -7546133 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1457 2798 147 118 0 chr11 114297723 114297758 -7546098 - RMER4B LTR ERVK -543 42 2 6 1457 1053 159 109 5 chr11 114298372 114298574 -7545282 + URR1B DNA MER1_type 3 225 0 6 1457 1100 259 94 23 chr11 114299805 114300157 -7543699 + MTEa LTR MaLR 1 377 -2 6 1457 2269 82 0 71 chr11 114300943 114301296 -7542560 - ORR1A4 LTR MaLR -1 328 1 6 1457 337 273 110 46 chr11 114301595 114301768 -7542088 - MLT2D LTR ERVL -74 340 157 6 1457 409 70 70 0 chr11 114301953 114302024 -7541832 + (GGGGA)n Simple_repeat Simple_repeat 1 76 0 6 1457 553 227 25 31 chr11 114302033 114302241 -7541615 + B3 SINE B2 2 145 -53 6 1457 387 0 0 0 chr11 114302247 114302290 -7541566 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1457 316 229 48 0 chr11 114302311 114302394 -7541462 - MLT2D LTR ERVL -467 89 3 6 1457 257 290 20 48 chr11 114303339 114303449 -7540407 + MIRb SINE MIR 111 216 -46 6 1457 290 265 36 0 chr11 114304281 114304364 -7539492 - RMER15 LTR ERVL -74 501 416 6 1457 369 0 0 0 chr11 114304503 114304544 -7539312 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1457 657 319 8 34 chr11 114304970 114305236 -7538620 - B4A SINE B4 -33 259 1 6 1457 285 307 78 9 chr11 114305837 114305952 -7537904 + MER20 DNA MER1_type 51 173 -46 6 1457 336 48 0 0 chr11 114306203 114306245 -7537611 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1457 723 169 0 0 chr11 114306455 114306627 -7537229 + (CA)n Simple_repeat Simple_repeat 2 173 0 6 1457 245 143 0 0 chr11 114306914 114306954 -7536902 - MER58B DNA MER1_type -130 211 172 6 1457 911 104 0 0 chr11 114306954 114307079 -7536777 + B2_Mm2 SINE B2 1 125 -70 6 1457 248 277 0 0 chr11 114307733 114307798 -7536058 - L2a LINE L2 -1 3425 3361 6 1457 233 29 29 0 chr11 114308033 114308067 -7535789 + (CCCCG)n Simple_repeat Simple_repeat 5 39 0 6 1457 605 293 30 10 chr11 114308862 114309062 -7534794 + B3 SINE B2 4 207 -9 6 1457 221 258 14 43 chr11 114309096 114309165 -7534691 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1457 885 246 26 26 chr11 114309192 114309426 -7534430 - B4A SINE B4 -4 288 55 6 1457 23 68 0 0 chr11 114309497 114309541 -7534315 + AT_rich Low_complexity Low_complexity 1 44 0 6 1457 22 0 0 0 chr11 114309571 114309593 -7534263 + AT_rich Low_complexity Low_complexity 1 22 0 6 1457 216 0 0 0 chr11 114309859 114309883 -7533973 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1457 199 296 19 0 chr11 114310620 114310674 -7533182 - L2a LINE L2 -7 3419 3365 6 1457 1250 190 122 65 chr11 114311030 114311384 -7532472 - ORR1D1 LTR MaLR 0 374 1 6 1457 416 348 52 38 chr11 114311532 114311819 -7532037 - MLT1E2 LTR MaLR -110 517 227 6 1457 2115 94 42 0 chr11 114312227 114312534 -7531322 - ORR1A3 LTR MaLR -1 325 6 6 1457 216 0 0 0 chr11 114312535 114312559 -7531297 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1457 2229 69 122 11 chr11 114314222 114314573 -7529283 - RLTR10 LTR ERVK 0 390 1 6 1457 564 288 22 56 chr11 114315563 114315795 -7528061 - RMER15 LTR ERVL -5 570 347 6 1457 282 265 112 0 chr11 114316800 114316898 -7526958 + PB1D7 SINE Alu 5 113 -7 6 1457 1107 198 31 4 chr11 114317201 114317429 -7526427 + MTD LTR MaLR 9 242 -177 6 1457 410 204 0 9 chr11 114317429 114317543 -7526313 + (CA)n Simple_repeat Simple_repeat 1 113 0 6 1457 324 143 0 51 chr11 114317546 114317605 -7526251 + HAL1-3A_ME LINE L1 1975 2030 -828 6 1457 4184 20 0 12 chr11 114317621 114318120 -7525736 + MT2_Mm LTR ERVL 1 493 0 6 1457 39447 16 14 0 chr11 114318120 114323408 -7520448 + MERVL-int LTR ERVL 1 5360 -125 6 1457 355 158 71 35 chr11 114323408 114323493 -7520363 + ORR1A3-int LTR MaLR 553 640 -1323 6 1457 301 0 0 0 chr11 114323493 114323531 -7520325 + MERVL-int LTR ERVL 5448 5485 0 6 1457 4184 20 0 12 chr11 114323531 114324030 -7519826 + MT2_Mm LTR ERVL 1 493 0 6 1457 314 162 14 0 chr11 114324037 114324111 -7519745 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1457 739 151 76 38 chr11 114324111 114324269 -7519587 + MTD LTR MaLR 248 411 -8 6 1457 623 235 51 62 chr11 114325715 114325910 -7517946 + B3A SINE B2 1 193 -5 6 1457 258 156 0 0 chr11 114326736 114326781 -7517075 + A-rich Low_complexity Low_complexity 1 45 0 6 1457 836 172 172 0 chr11 114328763 114328955 -7514901 + URR1B DNA MER1_type 1 225 0 6 1457 263 71 24 0 chr11 114329631 114329673 -7514183 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 1457 233 70 47 0 chr11 114330145 114330188 -7513668 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 6 1457 300 322 90 7 chr11 114330198 114330342 -7513514 + HAL1-3A_ME LINE L1 2284 2439 -419 6 1457 576 0 0 0 chr11 114330595 114330659 -7513197 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 6 1457 1074 144 0 0 chr11 114330735 114330915 -7512941 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1457 628 156 0 15 chr11 114330919 114331049 -7512807 + CT-rich Low_complexity Low_complexity 1 128 0 6 1457 198 0 0 0 chr11 114331274 114331296 -7512560 + (GCTG)n Simple_repeat Simple_repeat 4 25 0 6 1457 2059 155 6 0 chr11 114331801 114332137 -7511719 + ORR1B1 LTR MaLR 53 390 -4 6 1457 928 150 35 51 chr11 114332137 114332334 -7511522 + B2_Mm2 SINE B2 2 195 0 6 1457 357 275 44 100 chr11 114332368 114332694 -7511162 + MTEa LTR MaLR 34 367 -12 6 1457 401 0 20 0 chr11 114332801 114332850 -7511006 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 6 1457 436 164 169 16 chr11 114332852 114332976 -7510880 + MER53 DNA hAT 50 192 -1 6 1457 243 276 0 0 chr11 114333100 114333158 -7510698 - MLT1G3 LTR MaLR -16 579 522 6 1457 973 253 85 20 chr11 114333163 114333469 -7510387 - MTD LTR MaLR 0 419 94 6 1457 281 194 73 15 chr11 114333466 114333534 -7510322 + MTEb LTR MaLR 295 366 -13 6 1457 344 22 0 22 chr11 114334731 114334777 -7509079 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1457 614 288 159 102 chr11 114334950 114335283 -7508573 + ORR1E LTR MaLR 1 352 -7 6 1457 1249 305 58 60 chr11 114335283 114335814 -7508042 + Lx8 LINE L1 6723 7252 -221 6 1457 256 326 45 0 chr11 114335877 114335966 -7507890 + RMER15 LTR ERVL 378 470 -105 6 1457 279 0 0 0 chr11 114337440 114337471 -7506385 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1457 405 0 0 0 chr11 114337471 114337515 -7506341 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1457 240 35 0 0 chr11 114337865 114337894 -7505962 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1457 351 44 0 0 chr11 114338326 114338371 -7505485 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1457 602 260 180 11 chr11 114338394 114338666 -7505190 + MTE2b LTR MaLR 16 333 -46 6 1457 524 215 19 6 chr11 114338666 114338825 -7505031 + GA-rich Low_complexity Low_complexity 3 163 0 6 1457 372 306 133 19 chr11 114338825 114338983 -7504873 - B3A SINE B2 -34 182 8 6 1457 281 172 4 18 chr11 114338980 114339049 -7504807 + MTE2b LTR MaLR 313 379 0 6 1457 253 219 47 0 chr11 114339669 114339733 -7504123 - Tigger12c DNA MER2_type -154 580 514 6 1457 716 313 67 61 chr11 114339848 114340093 -7503763 + ORR1E LTR MaLR 1 234 -125 6 1457 252 0 0 0 chr11 114340093 114340121 -7503735 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1457 716 224 204 12 chr11 114340121 114340221 -7503635 + ORR1E LTR MaLR 235 379 0 6 1457 192 77 0 0 chr11 114340415 114340441 -7503415 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1457 296 102 0 20 chr11 114340499 114340549 -7503307 + (GGGTG)n Simple_repeat Simple_repeat 3 51 0 6 1457 368 146 39 0 chr11 114340828 114340931 -7502925 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1457 325 211 8 54 chr11 114340931 114341061 -7502795 - Lx9 LINE L1 -4 7640 7517 7 1457 186 133 0 0 chr11 114341063 114341093 -7502763 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1457 316 305 41 92 chr11 114341093 114341288 -7502568 + B4 SINE B4 3 187 -105 7 1457 421 227 64 0 chr11 114341993 114342103 -7501753 + L1MA4A LINE L1 5822 5938 -365 7 1457 252 0 0 0 chr11 114342104 114342132 -7501724 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1457 278 303 13 0 chr11 114342180 114342256 -7501600 + ID SINE ID 1 77 -147 7 1457 272 186 0 48 chr11 114342428 114342490 -7501366 - RSINE1 SINE B4 -105 60 2 7 1457 195 69 0 0 chr11 114342901 114342930 -7500926 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1457 230 125 25 0 chr11 114343025 114343065 -7500791 + B3A SINE B2 16 56 -142 7 1457 315 0 0 0 chr11 114343104 114343139 -7500717 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1457 263 28 28 0 chr11 114343139 114343174 -7500682 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1457 852 311 16 16 chr11 114344153 114344398 -7499458 - MLT1B LTR MaLR -143 247 3 7 1457 797 99 0 8 chr11 114344475 114344597 -7499259 + (CTGGGG)n Simple_repeat Simple_repeat 1 121 0 7 1457 581 340 8 56 chr11 114344611 114344766 -7499090 - MLT1A LTR MaLR -133 241 94 7 1457 1155 241 55 103 chr11 114344766 114344932 -7498924 + MTEa LTR MaLR 1 167 -212 7 1457 1155 43 0 0 chr11 114344932 114345073 -7498783 + B1_Mm SINE Alu 1 141 -6 7 1457 468 51 0 0 chr11 114345075 114345134 -7498722 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 7 1457 1155 241 55 103 chr11 114345134 114345362 -7498494 + MTEa LTR MaLR 168 379 0 7 1457 581 340 8 56 chr11 114345362 114345455 -7498401 - MLT1A LTR MaLR -281 93 7 7 1457 1103 234 167 14 chr11 114346487 114346834 -7497022 - MTD LTR MaLR -15 404 5 7 1457 183 26 24 71 chr11 114348015 114348057 -7495799 + (TCC)n Simple_repeat Simple_repeat 2 41 0 7 1457 830 295 51 25 chr11 114349014 114349141 -7494715 + B4 SINE B4 7 131 -161 7 1457 549 0 0 0 chr11 114349141 114349202 -7494654 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1457 830 295 51 25 chr11 114349202 114349349 -7494507 + B4 SINE B4 132 287 -5 7 1457 644 192 6 19 chr11 114350548 114350864 -7492992 + G-rich Low_complexity Low_complexity 1 311 0 7 1457 228 175 0 0 chr11 114350870 114350910 -7492946 + RSINE1 SINE B4 110 149 -16 7 1457 468 91 0 0 chr11 114350921 114350987 -7492869 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1457 245 253 120 11 chr11 114351746 114351838 -7492018 + MER5A1 DNA MER1_type 23 124 -42 7 1457 499 252 93 75 chr11 114351832 114352046 -7491810 + B4A SINE B4 9 226 -66 7 1457 2050 163 81 115 chr11 114352050 114352633 -7491223 - RLTR20B1 LTR ERVK 0 563 1 7 1457 2011 172 57 2 chr11 114352633 114353040 -7490816 - MYSERV16_I-int LTR ERVK 0 2326 1898 7 1457 340 100 0 0 chr11 114353188 114353238 -7490618 + HAL1-3A_ME LINE L1 1978 2027 -831 7 1457 686 267 169 6 chr11 114353382 114353700 -7490156 + MTEa LTR MaLR 2 371 -8 7 1457 400 283 171 43 chr11 114353927 114354008 -7489848 + RMER15 LTR ERVL 275 359 -216 7 1457 2243 72 119 11 chr11 114354008 114354360 -7489496 + RLTR10 LTR ERVK 1 390 0 7 1457 400 283 171 43 chr11 114354360 114354536 -7489320 + RMER15 LTR ERVL 360 565 -10 7 1457 632 277 19 98 chr11 114354931 114355247 -7488609 - B4A SINE B4 0 292 2 7 1457 618 99 0 0 chr11 114355333 114355424 -7488432 + (GA)n Simple_repeat Simple_repeat 1 91 0 7 1457 540 246 74 83 chr11 114355451 114355681 -7488175 - MER74A LTR ERVL -162 396 169 7 1457 235 256 56 0 chr11 114355871 114355961 -7487895 + LTR33 LTR ERVL 417 511 -4 7 1457 306 0 0 0 chr11 114356280 114356314 -7487542 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 7 1457 304 264 54 9 chr11 114357812 114357923 -7485933 + RMER15 LTR ERVL 353 468 -107 7 1457 531 0 0 0 chr11 114358531 114358590 -7485266 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1457 1135 207 33 146 chr11 114358751 114359176 -7484680 + MTE2a LTR MaLR 3 379 0 7 1457 1172 264 59 34 chr11 114359446 114359627 -7484229 - MTEa LTR MaLR -13 366 180 7 1457 1918 148 82 0 chr11 114359627 114359991 -7483865 - ORR1B1 LTR MaLR 0 394 1 7 1457 1172 264 59 34 chr11 114359991 114360166 -7483690 - MTEa LTR MaLR -200 179 1 7 1457 3151 48 2 12 chr11 114361458 114361862 -7481994 - MTB LTR MaLR 0 400 1 7 1457 1063 273 116 89 chr11 114361988 114362070 -7481786 + MER44D DNA MER2_type 1 71 -634 7 1457 952 216 38 9 chr11 114362070 114362280 -7481576 + B3 SINE B2 1 216 0 7 1457 1063 273 116 89 chr11 114362280 114362779 -7481077 + MER44D DNA MER2_type 72 598 -107 7 1457 703 259 110 179 chr11 114362779 114363170 -7480686 + MTE2b LTR MaLR 2 365 -14 7 1457 323 185 94 13 chr11 114363211 114363370 -7480486 + (CAGGG)n Simple_repeat Simple_repeat 2 173 0 7 1457 214 221 38 38 chr11 114363461 114363541 -7480315 + (CCTG)n Simple_repeat Simple_repeat 4 83 0 7 1457 214 320 13 0 chr11 114364329 114364407 -7479449 + MIR SINE MIR 61 139 -123 7 1457 216 202 35 12 chr11 114364475 114364560 -7479296 + CT-rich Low_complexity Low_complexity 2 88 0 7 1457 219 69 0 0 chr11 114365450 114365479 -7478377 + PB1D7 SINE Alu 24 52 -68 7 1457 772 208 0 20 chr11 114365481 114365628 -7478228 + B1_Mur2 SINE Alu 1 144 -5 7 1457 238 285 135 27 chr11 114365639 114365787 -7478069 + RSINE1 SINE B4 2 165 0 7 1457 937 80 28 17 chr11 114365817 114365995 -7477861 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1457 363 44 0 0 chr11 114366080 114366125 -7477731 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1457 346 312 39 0 chr11 114366401 114366555 -7477301 - RSINE1 SINE B4 -4 161 2 7 1457 564 213 131 23 chr11 114366667 114366870 -7476986 - B3A SINE B2 -5 211 1 7 1457 237 285 118 31 chr11 114366893 114367020 -7476836 - ORR1E LTR MaLR -168 191 54 7 1457 699 274 133 12 chr11 114367769 114368009 -7475847 - MTE2b LTR MaLR -110 269 1 7 1457 238 234 45 30 chr11 114368082 114368148 -7475708 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 7 1457 1264 293 33 10 chr11 114369357 114369747 -7474109 + Lx8 LINE L1 6989 7387 -86 7 1457 270 273 50 10 chr11 114370174 114370274 -7473582 + Lx8 LINE L1 7269 7372 -101 7 1457 202 91 0 83 chr11 114370526 114370574 -7473282 + GA-rich Low_complexity Low_complexity 3 46 0 7 1457 1691 178 3 28 chr11 114370576 114370899 -7472957 - MTC LTR MaLR -3 418 104 7 1457 472 112 0 36 chr11 114370904 114370987 -7472869 - B2_Mm1t SINE B2 -7 186 107 7 1457 237 159 0 0 chr11 114370988 114371032 -7472824 - B3A SINE B2 -154 44 1 7 1457 587 144 10 0 chr11 114371032 114371127 -7472729 - MTC LTR MaLR -325 96 1 7 1457 1255 241 28 52 chr11 114371324 114371687 -7472169 - ORR1E LTR MaLR -5 354 1 7 1457 2498 59 19 0 chr11 114371817 114372138 -7471718 + ORR1A2 LTR MaLR 1 327 0 7 1457 348 349 112 36 chr11 114372694 114372890 -7470966 - MIRb SINE MIR -3 259 49 7 1457 566 150 54 18 chr11 114375063 114375289 -7468567 + CT-rich Low_complexity Low_complexity 1 234 0 7 1457 304 244 34 12 chr11 114375309 114375429 -7468427 + ORR1D2 LTR MaLR 6 133 -226 7 1457 188 224 85 17 chr11 114376235 114376294 -7467562 - MER5B DNA MER1_type -1 177 115 7 1457 302 24 48 0 chr11 114376306 114376348 -7467508 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1457 321 26 0 0 chr11 114376563 114376601 -7467255 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 7 1457 202 224 0 0 chr11 114376856 114376905 -7466951 + A-rich Low_complexity Low_complexity 1 49 0 7 1457 513 292 62 22 chr11 114377289 114377562 -7466294 - B4A SINE B4 -8 284 1 7 1457 402 218 115 29 chr11 114377771 114377875 -7465981 - B1_Mur1 SINE Alu 0 149 37 7 1457 290 257 29 0 chr11 114377894 114377964 -7465892 - tRNA-Asp-GAY tRNA tRNA -3 72 1 7 1457 180 0 0 0 chr11 114377992 114378012 -7465844 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1457 444 37 0 0 chr11 114378580 114378634 -7465222 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 7 1457 486 309 57 30 chr11 114378661 114378878 -7464978 - RMER20B LTR ERVK -209 418 173 7 1457 3566 133 164 0 chr11 114378910 114379543 -7464313 - RMER19A LTR ERVK 0 737 1 7 1457 238 188 108 68 chr11 114379718 114379792 -7464064 - MIRb SINE MIR -79 189 109 7 1457 781 301 89 6 chr11 114379865 114380203 -7463653 - LTR37A LTR ERV1 -3 423 58 7 1457 274 269 37 153 chr11 114380290 114380479 -7463377 + MLT1A1 LTR MaLR 26 192 -216 7 1457 188 298 279 0 chr11 114380814 114380972 -7462884 - MIR SINE MIR -8 254 53 7 1457 187 351 14 0 chr11 114381356 114381430 -7462426 - MIRc SINE MIR -105 163 89 7 1457 1117 243 31 48 chr11 114381552 114381846 -7462010 + B4A SINE B4 2 290 -2 7 1457 199 137 40 27 chr11 114381848 114381923 -7461933 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1457 2321 80 6 30 chr11 114382435 114382486 -7461370 - ORR1A2 LTR MaLR 0 327 286 7 1457 1452 68 5 0 chr11 114382486 114382678 -7461178 - B2_Mm1a SINE B2 0 193 1 7 1457 2321 80 6 30 chr11 114382678 114382961 -7460895 - ORR1A2 LTR MaLR -42 285 1 7 1457 299 311 33 0 chr11 114383429 114383519 -7460337 + B1F SINE Alu 51 143 -6 7 1457 267 253 89 0 chr11 114383713 114383792 -7460064 - MIRb SINE MIR -90 178 93 7 1457 1729 161 134 30 chr11 114385082 114385447 -7458409 - MTB_Mm LTR MaLR 0 407 5 7 1457 695 308 18 4 chr11 114385523 114385748 -7458108 + B4A SINE B4 7 234 -58 7 1457 1237 14 0 7 chr11 114385782 114385930 -7457926 + B1_Mus2 SINE Alu 1 147 0 7 1457 207 0 0 0 chr11 114385935 114385958 -7457898 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1457 573 311 48 56 chr11 114385964 114386216 -7457640 + B4A SINE B4 43 292 0 7 1457 384 156 11 22 chr11 114386360 114386452 -7457404 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 1457 430 268 149 23 chr11 114387212 114387463 -7456393 - MLT1F2 LTR MaLR -26 627 244 7 1457 400 379 48 68 chr11 114387487 114387779 -7456077 + B4A SINE B4 1 286 -6 7 1457 21 36 0 0 chr11 114387836 114387864 -7455992 + AT_rich Low_complexity Low_complexity 1 28 0 8 1457 337 348 36 30 chr11 114387873 114388039 -7455817 - MLT1F2 LTR MaLR -341 219 53 7 1457 603 136 9 19 chr11 114388378 114388483 -7455373 - BC1_Mm scRNA scRNA -48 104 1 8 1457 657 25 0 0 chr11 114389077 114389156 -7454700 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 8 1457 740 294 20 48 chr11 114389184 114389434 -7454422 - B4A SINE B4 0 292 50 8 1457 189 94 0 0 chr11 114389515 114389547 -7454309 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1457 1113 58 43 0 chr11 114389548 114389686 -7454170 - B1_Mus2 SINE Alu -1 146 3 8 1457 324 0 0 0 chr11 114389709 114389745 -7454111 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 8 1457 227 111 0 0 chr11 114389769 114389805 -7454051 - B2_Mm1a SINE B2 -91 102 67 8 1457 1280 103 23 0 chr11 114389842 114390016 -7453840 - B2_Mm2 SINE B2 -14 181 4 8 1457 448 215 18 27 chr11 114390029 114390139 -7453717 + B3 SINE B2 107 215 -1 8 1457 204 140 0 74 chr11 114390407 114390461 -7453395 + C-rich Low_complexity Low_complexity 2 51 0 8 1457 315 202 21 11 chr11 114391244 114391300 -7452556 + polypurine Low_complexity Low_complexity 1 57 0 8 1457 998 136 0 6 chr11 114391300 114391470 -7452386 + (GAAA)n Simple_repeat Simple_repeat 4 172 0 8 1457 315 202 21 11 chr11 114391470 114391508 -7452348 + polypurine Low_complexity Low_complexity 58 96 0 8 1457 263 272 60 24 chr11 114391598 114391681 -7452175 - MLT1D LTR MaLR -332 173 88 8 1457 489 218 20 0 chr11 114391686 114391787 -7452069 + B1F SINE Alu 42 144 -5 8 1457 669 288 113 4 chr11 114391857 114392154 -7451702 - L1MB8 LINE L1 -285 6015 5695 8 1457 771 97 0 9 chr11 114392687 114392802 -7451054 - RLTR9E LTR ERVK -294 115 2 8 1457 356 335 112 22 chr11 114392805 114393028 -7450828 + MLT1F2 LTR MaLR 318 560 0 8 1457 330 282 9 28 chr11 114393697 114393803 -7450053 + (TGG)n Simple_repeat Simple_repeat 2 105 0 8 1457 254 233 12 0 chr11 114393891 114393977 -7449879 + (TGG)n Simple_repeat Simple_repeat 2 88 0 8 1457 2015 113 3 29 chr11 114393986 114394373 -7449483 + ORR1A2 LTR MaLR 1 346 0 8 1457 431 130 13 0 chr11 114395137 114395214 -7448642 + (CAT)n Simple_repeat Simple_repeat 2 79 0 8 1457 331 338 39 19 chr11 114396974 114397128 -7446728 + LTR33 LTR ERVL 297 453 -62 8 1457 640 258 117 45 chr11 114397134 114397398 -7446458 + B4A SINE B4 3 285 -7 8 1457 269 325 6 30 chr11 114398153 114398321 -7445535 + C-rich Low_complexity Low_complexity 5 168 0 8 1457 203 296 0 0 chr11 114399587 114399631 -7444225 + (CG)n Simple_repeat Simple_repeat 2 45 0 8 1457 535 276 169 70 chr11 114399882 114400247 -7443609 + MTE2a LTR MaLR 13 406 -15 8 1457 1541 197 199 95 chr11 114400481 114400963 -7442893 + MT2A LTR ERVL 1 532 -1 8 1457 746 238 0 7 chr11 114401257 114401405 -7442451 + RSINE1 SINE B4 2 148 -17 8 1457 23 0 0 0 chr11 114401490 114401513 -7442343 + AT_rich Low_complexity Low_complexity 1 23 0 8 1457 308 220 0 0 chr11 114401995 114402054 -7441802 + MamGypLTR3 LTR Gypsy 546 604 -235 8 1457 848 192 29 37 chr11 114402351 114402550 -7441306 + ORR1D1 LTR MaLR 1 207 -152 8 1457 990 216 39 146 chr11 114402799 114403135 -7440721 + RMER13A LTR ERVK 5 304 -604 8 1457 1435 204 100 28 chr11 114403125 114403484 -7440372 + RMER13A LTR ERVK 472 856 -4 8 1457 221 0 0 33 chr11 114403894 114403924 -7439932 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 8 1457 264 231 0 0 chr11 114404293 114404397 -7439459 + C-rich Low_complexity Low_complexity 1 104 0 8 1457 423 241 41 49 chr11 114404654 114404839 -7439017 - B3A SINE B2 -42 174 1 8 1457 264 149 0 0 chr11 114404855 114404902 -7438954 + (GGGA)n Simple_repeat Simple_repeat 2 48 0 8 1457 366 61 0 0 chr11 114404946 114404995 -7438861 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1457 405 0 0 0 chr11 114404995 114405040 -7438816 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 1457 817 275 92 8 chr11 114405043 114405303 -7438553 - B4A SINE B4 -10 282 1 8 1457 713 279 130 28 chr11 114406354 114406601 -7437255 + B4 SINE B4 21 292 0 8 1457 390 272 175 24 chr11 114406612 114406778 -7437078 - MIRb SINE MIR 0 268 78 8 1457 495 126 0 0 chr11 114407130 114407225 -7436631 + (TG)n Simple_repeat Simple_repeat 1 95 0 8 1457 324 0 0 0 chr11 114407259 114407295 -7436561 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 8 1457 1085 61 15 0 chr11 114407295 114407427 -7436429 - B1_Mm SINE Alu -13 134 1 8 1457 406 288 32 63 chr11 114407462 114407588 -7436268 - B4A SINE B4 -75 217 96 8 1457 396 0 0 0 chr11 114407600 114407644 -7436212 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1457 270 0 0 0 chr11 114407644 114407673 -7436183 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1457 522 249 126 25 chr11 114407685 114407856 -7436000 + MTEb LTR MaLR 163 373 -6 8 1457 306 73 0 0 chr11 114407992 114408033 -7435823 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 8 1457 652 234 0 0 chr11 114408166 114408290 -7435566 - RSINE1 SINE B4 -39 126 3 8 1457 227 327 57 75 chr11 114408515 114408674 -7435182 - MLT1J1 LTR MaLR -50 394 239 8 1457 634 254 7 14 chr11 114409127 114409267 -7434589 + RSINE1 SINE B4 3 141 -24 8 1457 387 60 0 0 chr11 114409267 114409317 -7434539 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1457 1136 68 0 20 chr11 114409336 114409473 -7434383 + B1_Mus1 SINE Alu 1 137 -11 8 1457 219 36 0 0 chr11 114409473 114409501 -7434355 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1457 1136 68 0 20 chr11 114409501 114409514 -7434342 + B1_Mus1 SINE Alu 138 148 0 8 1457 678 332 99 11 chr11 114409901 114410254 -7433602 + L3 LINE CR1 4104 4487 -2 8 1457 621 239 58 7 chr11 114411612 114411751 -7432105 + RSINE1 SINE B4 1 146 -19 8 1457 384 22 0 0 chr11 114411756 114411801 -7432055 + (CATA)n Simple_repeat Simple_repeat 1 45 0 8 1457 189 107 0 0 chr11 114411801 114411829 -7432027 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 8 1457 227 276 80 72 chr11 114412356 114412481 -7431375 + MT2B LTR ERVL 128 253 -348 8 1457 628 243 7 0 chr11 114412387 114412523 -7431333 + ID_B1 SINE B4 84 220 -4 8 1457 991 146 222 0 chr11 114413126 114413311 -7430545 - URR1A DNA MER1_type 0 226 1 8 1457 303 28 0 0 chr11 114413362 114413398 -7430458 + (ATTG)n Simple_repeat Simple_repeat 3 38 0 8 1457 570 253 18 24 chr11 114413820 114413990 -7429866 - MER5B DNA MER1_type -1 177 9 8 1457 636 14 0 0 chr11 114414089 114414162 -7429694 + (TG)n Simple_repeat Simple_repeat 1 73 0 8 1457 423 0 0 0 chr11 114414162 114414208 -7429648 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1457 229 286 0 0 chr11 114414214 114414263 -7429593 - B4A SINE B4 -23 269 221 8 1457 763 262 124 8 chr11 114414327 114414569 -7429287 - B4A SINE B4 -22 270 1 8 1457 836 254 19 114 chr11 114414569 114414827 -7429029 - B4A SINE B4 -60 232 1 8 1457 231 289 56 0 chr11 114414845 114414935 -7428921 - MER5A1 DNA MER1_type -71 95 1 8 1457 194 154 26 0 chr11 114414943 114414982 -7428874 + MER5A DNA MER1_type 1 40 -149 8 1457 1212 163 39 19 chr11 114416102 114416308 -7427548 + B3 SINE B2 1 210 -6 8 1457 414 0 0 0 chr11 114416354 114416400 -7427456 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1457 251 289 50 50 chr11 114416477 114416597 -7427259 + MIR SINE MIR 53 172 -90 8 1457 295 286 38 9 chr11 114417995 114418101 -7425755 - RMER15 LTR ERVL -65 510 402 8 1457 731 270 101 0 chr11 114418500 114418689 -7425167 + ID_B1 SINE B4 5 212 -12 8 1457 1403 178 0 0 chr11 114418716 114418941 -7424915 + URR1A DNA MER1_type 1 225 -1 8 1457 312 314 35 103 chr11 114418950 114419124 -7424732 + B4A SINE B4 11 172 -120 8 1457 233 349 11 23 chr11 114419143 114419231 -7424625 + RSINE1 SINE B4 79 165 0 8 1457 412 218 53 140 chr11 114419215 114419386 -7424470 + B4A SINE B4 66 221 -71 8 1457 1046 38 0 0 chr11 114419256 114419388 -7424468 + B1_Mus1 SINE Alu 13 144 -4 8 1457 288 0 0 0 chr11 114419389 114419421 -7424435 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1457 450 342 20 25 chr11 114420205 114420406 -7423450 - RMER15 LTR ERVL -5 570 371 8 1457 291 93 0 0 chr11 114421629 114421672 -7422184 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 8 1457 352 237 42 34 chr11 114422117 114422235 -7421621 - MIR3 SINE MIR -22 186 68 8 1457 205 196 43 21 chr11 114423770 114423817 -7420039 - MIRb SINE MIR -35 233 186 8 1457 406 233 19 12 chr11 114423965 114424126 -7419730 + CT-rich Low_complexity Low_complexity 2 163 0 8 1457 1148 204 4 26 chr11 114425495 114425722 -7418134 + URR1A DNA MER1_type 5 226 0 8 1458 230 281 174 0 chr11 114425890 114426011 -7417845 - LTR16C LTR ERVL -27 462 321 8 1458 833 239 16 11 chr11 114426330 114426520 -7417336 + B3A SINE B2 7 197 -1 8 1458 239 273 15 15 chr11 114426659 114426726 -7417130 - ID4 SINE ID -14 69 3 8 1458 4288 39 2 57 chr11 114426977 114427189 -7416667 + LTRIS3 LTR ERV1 1 208 -304 8 1458 1756 21 0 0 chr11 114427189 114427382 -7416474 + B2_Mm1t SINE B2 1 193 0 8 1458 4288 39 2 57 chr11 114427382 114427711 -7416145 + LTRIS3 LTR ERV1 209 512 0 8 1458 365 220 32 42 chr11 114427829 114427924 -7415932 + B1F SINE Alu 1 94 -55 8 1458 305 169 42 0 chr11 114427934 114428005 -7415851 + G-rich Low_complexity Low_complexity 3 76 0 8 1458 215 139 0 65 chr11 114428937 114428983 -7414873 + C-rich Low_complexity Low_complexity 4 46 0 8 1458 208 250 0 0 chr11 114429230 114429278 -7414578 - MIR SINE MIR -149 113 66 8 1458 825 147 34 27 chr11 114430161 114430308 -7413548 + B1_Mur4 SINE Alu 2 149 -1 8 1458 846 97 0 0 chr11 114430364 114430508 -7413348 + (TTC)n Simple_repeat Simple_repeat 2 145 0 8 1458 1191 91 10 83 chr11 114430508 114430638 -7413218 - B2_Mm1t SINE B2 -15 178 51 9 1458 616 108 0 0 chr11 114430638 114430721 -7413135 - ID2 SINE ID 0 83 1 9 1458 1191 91 10 83 chr11 114430721 114430782 -7413074 - B2_Mm1t SINE B2 -143 50 1 9 1458 268 200 32 32 chr11 114430870 114430932 -7412924 - MER45A DNA Tip100 -19 159 98 9 1458 493 271 0 25 chr11 114430956 114431077 -7412779 + ID_B1 SINE B4 107 224 0 9 1458 323 198 127 0 chr11 114431095 114431204 -7412652 + B1_Mur1 SINE Alu 6 136 -13 9 1458 1962 158 27 101 chr11 114431228 114431301 -7412555 - ORR1C1 LTR MaLR 0 378 338 9 1458 1096 38 0 30 chr11 114431301 114431436 -7412420 - B1_Mus2 SINE Alu -16 131 1 9 1458 1962 158 27 101 chr11 114431436 114431770 -7412086 - ORR1C1 LTR MaLR -41 337 1 9 1458 468 0 0 0 chr11 114432220 114432272 -7411584 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1458 620 274 98 9 chr11 114433253 114433478 -7410378 - Lx8 LINE L1 -12 7461 7217 9 1458 3610 18 0 2 chr11 114433478 114433875 -7409981 + MTA_Mm LTR MaLR 1 396 0 9 1458 9572 29 3 0 chr11 114433875 114434970 -7408886 + MTA_Mm-int LTR MaLR 1 1098 0 9 1458 3470 38 0 2 chr11 114434970 114435367 -7408489 + MTA_Mm LTR MaLR 1 396 0 9 1458 602 237 75 53 chr11 114435412 114435599 -7408257 + Lx8 LINE L1 6925 7115 -358 9 1458 529 173 15 45 chr11 114436239 114436372 -7407484 + B2_Mm2 SINE B2 64 192 -3 9 1458 2128 278 49 51 chr11 114436378 114437128 -7406728 + Lx8 LINE L1 6725 7473 0 9 1458 361 318 112 52 chr11 114437305 114437537 -7406319 - MLT1F LTR MaLR -59 489 244 9 1458 305 154 0 0 chr11 114437652 114437704 -7406152 - PB1D10 SINE Alu -29 88 37 9 1458 334 286 65 19 chr11 114437708 114437815 -7406041 - MLT1F LTR MaLR -387 161 50 9 1458 776 278 23 14 chr11 114437903 114438118 -7405738 - ID_B1 SINE B4 -7 217 1 9 1458 301 239 337 10 chr11 114438171 114438302 -7405554 - RSINE1 SINE B4 0 165 2 9 1458 295 350 113 5 chr11 114438358 114438553 -7405303 + L2a LINE L2 3205 3420 -6 9 1458 741 330 62 22 chr11 114438568 114438890 -7404966 - MLT1G1 LTR MaLR 0 579 245 9 1458 436 269 30 64 chr11 114438865 114438922 -7404934 + ID_B1 SINE B4 44 202 -90 9 1458 764 142 7 15 chr11 114438922 114439058 -7404798 + B1_Mur1 SINE Alu 10 144 -5 9 1458 1188 56 50 0 chr11 114439075 114439236 -7404620 - B2_Mm2 SINE B2 -25 170 2 9 1458 225 306 71 9 chr11 114439961 114440073 -7403783 - MER20 DNA MER1_type -100 119 1 9 1458 416 175 24 48 chr11 114440618 114440702 -7403154 + ID4 SINE ID 1 82 -1 9 1458 960 225 126 24 chr11 114440709 114440964 -7402892 + B4A SINE B4 1 281 -11 9 1458 2272 173 89 48 chr11 114441034 114441537 -7402319 - RLTR11A LTR ERVK 0 528 5 9 1458 279 250 29 0 chr11 114441607 114441675 -7402181 + MLT1F LTR MaLR 282 351 -197 9 1458 276 272 71 71 chr11 114441701 114441800 -7402056 + MLT1F LTR MaLR 480 578 -1 9 1458 234 0 0 0 chr11 114442178 114442204 -7401652 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1458 429 302 129 11 chr11 114442256 114442527 -7401329 + L2a LINE L2 2546 2848 -571 9 1458 656 195 69 26 chr11 114442541 114442737 -7401119 + B4 SINE B4 9 223 -1 9 1458 2801 181 124 66 chr11 114443065 114443759 -7400097 - RMER19A LTR ERVK -3 734 1 9 1458 196 317 24 12 chr11 114443866 114443949 -7399907 + L2a LINE L2 3341 3424 -2 9 1458 450 264 48 132 chr11 114443957 114444096 -7399760 + RSINE1 SINE B4 14 144 -21 9 1458 3479 33 2 0 chr11 114444096 114444491 -7399365 - MTA_Mm LTR MaLR 0 396 1 9 1458 450 264 48 132 chr11 114444491 114444517 -7399339 + RSINE1 SINE B4 145 165 0 9 1458 253 211 0 19 chr11 114444701 114444754 -7399102 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1458 204 260 0 40 chr11 114446168 114446244 -7397612 + CT-rich Low_complexity Low_complexity 1 73 0 9 1458 191 271 106 76 chr11 114446308 114446390 -7397466 + MIRc SINE MIR 17 97 -171 9 1458 422 243 9 43 chr11 114446390 114446506 -7397350 + PB1D10 SINE Alu 1 112 -5 9 1458 191 271 106 76 chr11 114446506 114446555 -7397301 + MIRc SINE MIR 98 152 -116 9 1458 434 220 119 80 chr11 114446630 114446825 -7397031 - MER34 LTR ERV1 -3 568 338 9 1458 222 118 0 0 chr11 114446893 114446927 -7396929 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1458 338 0 24 0 chr11 114446927 114446968 -7396888 + (GA)n Simple_repeat Simple_repeat 1 43 0 9 1458 441 308 67 124 chr11 114446974 114447005 -7396851 + B4A SINE B4 27 55 -237 9 1458 4181 136 25 70 chr11 114447005 114447759 -7396097 - RMER6D LTR ERVK 0 720 1 9 1458 441 308 67 124 chr11 114447759 114447943 -7395913 + B4A SINE B4 56 247 -45 9 1458 1816 179 63 82 chr11 114447943 114448368 -7395488 + MTD LTR MaLR 1 417 -2 9 1458 441 308 67 124 chr11 114448368 114448394 -7395462 + B4A SINE B4 248 269 -23 9 1458 239 0 32 0 chr11 114448394 114448425 -7395431 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1458 441 308 67 124 chr11 114448425 114448463 -7395393 + B4A SINE B4 270 292 0 9 1458 1133 115 70 27 chr11 114449044 114449231 -7394625 - B2_Mm2 SINE B2 0 195 1 9 1458 321 264 14 48 chr11 114449251 114449367 -7394489 - PB1D10 SINE Alu -10 117 2 9 1458 450 283 83 44 chr11 114449571 114449594 -7394262 + CYRA11_Mm Unknown Y-chromosome 154 386 -226 9 1458 959 156 109 10 chr11 114449594 114449795 -7394061 - URR1A DNA MER1_type -5 221 1 9 1458 1180 242 74 33 chr11 114449803 114450140 -7393716 + ORR1E LTR MaLR 8 358 -1 9 1458 459 260 67 0 chr11 114451254 114451358 -7392498 + RSINE1 SINE B4 30 140 -25 9 1458 707 190 0 4 chr11 114451358 114451826 -7392030 + (TG)n Simple_repeat Simple_repeat 1 465 0 9 1458 466 308 93 68 chr11 114451894 114452173 -7391683 + B4A SINE B4 1 286 -6 9 1458 189 0 0 0 chr11 114452261 114452282 -7391574 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9 1458 747 231 32 65 chr11 114452345 114452562 -7391294 + B3 SINE B2 1 210 -6 9 1458 394 252 197 0 chr11 114452645 114452772 -7391084 - MLT1F LTR MaLR -203 345 194 9 1458 298 284 34 0 chr11 114452819 114452907 -7390949 - MLT1F LTR MaLR -453 95 5 9 1458 275 360 49 53 chr11 114453314 114453540 -7390316 - MIRb SINE MIR -9 259 35 9 1458 1666 197 91 8 chr11 114453685 114454068 -7389788 - MTD LTR MaLR 0 419 5 9 1458 479 17 17 0 chr11 114454081 114454141 -7389715 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1458 1112 242 38 24 chr11 114454155 114454443 -7389413 - B4A SINE B4 0 292 1 9 1458 255 271 149 0 chr11 114454660 114454767 -7389089 + L1MEf LINE L1 1863 1985 -4257 9 1458 473 271 43 103 chr11 114454824 114454907 -7388949 + B4 SINE B4 1 72 -220 9 1458 246 260 52 172 chr11 114454907 114455023 -7388833 + PB1 SINE Alu 1 102 -25 9 1458 267 79 0 0 chr11 114455042 114455080 -7388776 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1458 918 170 7 0 chr11 114455118 114455265 -7388591 + B1_Mur1 SINE Alu 2 149 0 9 1458 186 43 0 0 chr11 114455266 114455289 -7388567 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 9 1458 330 279 12 12 chr11 114455310 114455390 -7388466 - ID4_ SINE ID -2 81 2 9 1458 764 337 86 140 chr11 114455462 114455664 -7388192 + MLT1F2 LTR MaLR 5 207 -353 9 1458 204 40 0 0 chr11 114455664 114455689 -7388167 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1458 764 337 86 140 chr11 114455689 114455727 -7388129 + MLT1F2 LTR MaLR 208 213 -347 9 1458 1300 227 65 11 chr11 114455727 114456003 -7387853 - B4 SINE B4 0 292 2 9 1458 764 337 86 140 chr11 114456003 114456334 -7387522 + MLT1F2 LTR MaLR 214 546 -14 9 1458 926 187 43 57 chr11 114456423 114456633 -7387223 + B3 SINE B2 1 207 -9 9 1458 244 234 88 26 chr11 114456653 114456767 -7387089 + Lx8 LINE L1 7353 7473 0 9 1458 502 371 74 26 chr11 114456756 114456846 -7387010 + L1MEf LINE L1 2202 2297 -3849 9 1458 1217 108 26 26 chr11 114456846 114457037 -7386819 + B2_Mm2 SINE B2 2 192 -3 9 1458 592 308 141 33 chr11 114457037 114457660 -7386196 + L1MEf LINE L1 2298 2979 -3167 9 1458 680 283 133 8 chr11 114457706 114457961 -7385895 + B4A SINE B4 2 288 -4 9 1458 317 175 28 28 chr11 114457964 114458105 -7385751 + (CAGA)n Simple_repeat Simple_repeat 2 142 0 9 1458 383 180 0 9 chr11 114458142 114458254 -7385602 + (CAGA)n Simple_repeat Simple_repeat 2 112 0 9 1458 547 202 144 23 chr11 114458280 114458412 -7385444 + B1_Mur1 SINE Alu 1 148 -1 9 1458 232 271 69 59 chr11 114458445 114458547 -7385309 + MER21B LTR ERV1 19 121 -742 9 1458 1489 311 90 18 chr11 114458596 114459263 -7384593 + MER21B LTR ERV1 52 793 -70 9 1458 435 359 62 42 chr11 114459306 114459661 -7384195 + L1MEc LINE L1 76 437 -5963 9 1458 458 301 0 69 chr11 114459694 114459869 -7383987 + RSINE1 SINE B4 3 165 0 9 1458 951 279 24 37 chr11 114459949 114460243 -7383613 + B4A SINE B4 1 290 -2 9 1458 416 193 12 24 chr11 114460244 114460409 -7383447 + (CA)n Simple_repeat Simple_repeat 1 163 0 9 1458 343 392 37 49 chr11 114460442 114460769 -7383087 + L1MEc LINE L1 482 804 -5596 9 1458 471 228 47 5 chr11 114460780 114460966 -7382890 + B4A SINE B4 1 224 -68 9 1458 657 223 119 26 chr11 114460977 114461170 -7382686 + B3 SINE B2 1 211 -5 9 1458 855 144 53 0 chr11 114461249 114461381 -7382475 + B1_Mus2 SINE Alu 9 147 0 9 1458 386 284 24 114 chr11 114461438 114461548 -7382308 + RSINE1 SINE B4 12 124 -41 9 1458 330 26 0 0 chr11 114461548 114461587 -7382269 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1458 386 284 24 114 chr11 114461587 114461643 -7382213 + RSINE1 SINE B4 125 163 -2 9 1458 221 231 0 47 chr11 114461689 114461839 -7382017 + (CA)n Simple_repeat Simple_repeat 1 143 0 9 1458 641 219 50 21 chr11 114462097 114462237 -7381619 + B1F SINE Alu 6 149 0 9 1458 281 147 68 81 chr11 114462262 114462336 -7381520 + L1MEc LINE L1 11 83 -6317 9 1458 825 304 102 8 chr11 114462335 114462729 -7381127 + L1ME1 LINE L1 5542 5972 -207 9 1458 328 283 119 40 chr11 114462729 114462787 -7381069 + RSINE1 SINE B4 2 62 -103 9 1458 1240 27 0 20 chr11 114462787 114462937 -7380919 + B1_Mm SINE Alu 1 147 0 9 1458 328 283 119 40 chr11 114462937 114463029 -7380827 + RSINE1 SINE B4 63 163 -2 9 1458 421 326 108 20 chr11 114463029 114463078 -7380778 + L1MB8 LINE L1 5974 6024 -154 9 1458 255 152 0 0 chr11 114463078 114463124 -7380732 + (TGGG)n Simple_repeat Simple_repeat 2 47 0 9 1458 207 139 0 0 chr11 114463131 114463167 -7380689 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 9 1458 503 303 113 32 chr11 114463280 114463563 -7380293 + L1MEc LINE L1 3137 3442 -2877 9 1458 907 292 33 20 chr11 114463582 114463827 -7380029 + B4 SINE B4 41 288 -4 9 1458 332 22 22 0 chr11 114463883 114463928 -7379928 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1458 606 279 7 0 chr11 114463929 114464069 -7379787 - B1_Mur2 SINE Alu -6 143 3 9 1458 488 293 48 48 chr11 114464069 114464363 -7379493 + L1MEc LINE L1 4502 4795 -1524 9 1458 361 344 16 39 chr11 114464371 114464384 -7379472 + ID_B1 SINE B4 73 196 -28 9 1458 495 274 44 9 chr11 114464384 114464498 -7379358 + B1F SINE Alu 1 118 -31 9 1458 779 245 40 10 chr11 114464499 114464697 -7379159 + B3 SINE B2 1 204 -12 1 1458 1445 242 91 11 chr11 114465046 114465562 -7378294 - Lx8 LINE L1 -2 7471 6853 1 1458 842 248 135 19 chr11 114465751 114466010 -7377846 - B4A SINE B4 -2 290 2 1 1458 234 180 80 0 chr11 114466019 114466069 -7377787 + RMER15 LTR ERVL 7 60 -515 1 1458 1800 159 220 48 chr11 114466084 114466429 -7377427 + RMER15 LTR ERVL 45 465 -110 1 1458 1895 126 139 50 chr11 114466429 114466789 -7377067 - ORR1B1 LTR MaLR -2 392 1 1 1458 1800 159 220 48 chr11 114466789 114466884 -7376972 + RMER15 LTR ERVL 466 561 -14 1 1458 361 282 157 15 chr11 114466900 114467098 -7376758 + L1MEc LINE L1 5038 5263 -1056 9 1458 1447 73 11 0 chr11 114467106 114467297 -7376559 + B2_Mm1a SINE B2 1 193 0 1 1458 355 250 103 96 chr11 114467340 114467486 -7376370 - B1F1 SINE Alu 0 149 3 1 1458 388 304 26 56 chr11 114467558 114467755 -7376101 - B3A SINE B2 0 195 3 1 1458 1723 21 0 0 chr11 114467779 114467972 -7375884 - B2_Mm1a SINE B2 0 193 1 1 1458 329 269 43 9 chr11 114467989 114468105 -7375751 + L1MEc LINE L1 5306 5425 -894 9 1458 2987 48 12 37 chr11 114468224 114468293 -7375563 - MTB LTR MaLR 0 400 341 1 1458 3313 24 5 0 chr11 114468293 114468674 -7375182 - L1Md_F2 LINE L1 0 6582 6200 1 1458 2987 48 12 37 chr11 114468674 114469014 -7374842 - MTB LTR MaLR -60 340 1 1 1458 457 239 164 55 chr11 114469047 114469274 -7374582 + B4A SINE B4 3 264 -28 1 1458 279 272 139 9 chr11 114469295 114469410 -7374446 + B4 SINE B4 27 156 -136 1 1458 847 198 25 58 chr11 114469438 114469655 -7374201 - B3A SINE B2 0 216 7 1 1458 394 252 29 52 chr11 114469830 114470002 -7373854 - L1MC3 LINE L1 -1711 6074 5907 1 1458 3928 131 36 105 chr11 114470897 114471441 -7372415 + RMER6A LTR ERVK 1 489 -267 1 1458 543 31 0 0 chr11 114471441 114471506 -7372350 + (GAA)n Simple_repeat Simple_repeat 1 65 0 1 1458 3928 131 36 105 chr11 114471506 114471773 -7372083 + RMER6A LTR ERVK 490 756 0 1 1458 776 281 26 128 chr11 114472189 114472610 -7371246 - MTE2a LTR MaLR 0 379 2 1 1458 438 213 21 11 chr11 114473429 114473524 -7370332 + B4 SINE B4 2 97 -195 1 1458 843 243 27 0 chr11 114473531 114473716 -7370140 + B3 SINE B2 27 216 0 1 1458 300 309 0 0 chr11 114473977 114474058 -7369798 - MER81 DNA AcHobo -19 95 15 1 1458 873 237 308 15 chr11 114474063 114474387 -7369469 + MTD LTR MaLR 1 419 0 1 1458 314 23 0 23 chr11 114474400 114474444 -7369412 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1 1458 5190 84 8 31 chr11 114474462 114475105 -7368751 - L1_Mus3 LINE L1 0 6638 6012 1 1458 1439 63 21 16 chr11 114475105 114475297 -7368559 - B2_Mm2 SINE B2 -1 194 2 1 1458 5190 84 8 31 chr11 114475297 114475394 -7368462 - L1_Mus3 LINE L1 -627 6011 5915 1 1458 955 259 63 35 chr11 114475428 114475712 -7368144 + B4 SINE B4 1 292 0 1 1458 982 275 120 35 chr11 114475962 114476362 -7367494 + MLT1C LTR MaLR 10 443 -24 1 1458 1029 122 166 21 chr11 114476564 114476757 -7367099 + URR1B DNA MER1_type 5 225 0 1 1458 437 358 31 10 chr11 114477090 114477285 -7366571 - LTR16E1 LTR ERVL -66 472 274 1 1458 6161 108 31 0 chr11 114477887 114478769 -7365087 + ORR1A2-int LTR MaLR 1055 1963 0 1 1458 2080 77 3 66 chr11 114478769 114479073 -7364783 + ORR1A2 LTR MaLR 1 285 -42 1 1458 791 98 0 0 chr11 114479073 114479185 -7364671 + B2_Mm2 SINE B2 1 112 -83 1 1458 1345 84 22 0 chr11 114479365 114479543 -7364313 + B2_Mm2 SINE B2 1 182 -13 1 1458 406 73 0 22 chr11 114479574 114479640 -7364216 + B2_Mm2 SINE B2 47 109 -107 1 1458 216 0 0 0 chr11 114479655 114479679 -7364177 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1458 216 0 0 0 chr11 114479685 114479709 -7364147 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1458 613 270 47 63 chr11 114480526 114480779 -7363077 - B4A SINE B4 -43 249 1 1 1458 1112 216 9 9 chr11 114480847 114481062 -7362794 - B3 SINE B2 -1 215 1 1 1458 429 282 33 33 chr11 114481351 114481472 -7362384 + PB1 SINE Alu 5 125 -2 1 1458 3002 58 0 21 chr11 114481482 114481871 -7361985 + L1Md_F2 LINE L1 6202 6582 0 1 1458 640 246 7 7 chr11 114482004 114482139 -7361717 + RSINE1 SINE B4 2 136 -29 1 1458 512 158 8 0 chr11 114482143 114482276 -7361580 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 1 1458 279 0 0 0 chr11 114482297 114482328 -7361528 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1458 895 168 7 7 chr11 114482328 114482466 -7361390 - B1_Mur2 SINE Alu -11 138 1 1 1458 1684 175 4 4 chr11 114483014 114483295 -7360561 + RLTR27 LTR ERVK 29 309 0 1 1458 300 354 55 72 chr11 114483499 114483806 -7360050 + LTR33A_ LTR ERVL 230 531 0 1 1458 359 226 62 70 chr11 114484065 114484210 -7359646 - MLT1F1 LTR MaLR -13 641 362 1 1458 282 305 124 0 chr11 114484760 114484865 -7358991 - MLT1F1 LTR MaLR -144 267 150 1 1458 403 154 0 35 chr11 114485059 114485173 -7358683 + (TCTCTG)n Simple_repeat Simple_repeat 3 112 0 1 1458 229 284 35 60 chr11 114485194 114485310 -7358546 - L2c LINE L2 0 3387 3275 1 1458 595 214 143 0 chr11 114485493 114485633 -7358223 - ORR1D1 LTR MaLR 0 374 215 1 1458 663 106 21 0 chr11 114485631 114485725 -7358131 + B1_Mur3 SINE Alu 49 144 -5 1 1458 365 304 9 9 chr11 114485780 114485893 -7357963 - PB1D7 SINE Alu -5 115 3 1 1458 2664 191 72 68 chr11 114486305 114487026 -7356830 + RMER19B LTR ERVK 1 889 -13 1 1458 289 339 22 13 chr11 114487519 114487673 -7356183 + MIRb SINE MIR 1 162 -106 1 1458 3200 109 22 22 chr11 114487858 114488025 -7355831 - RLTR28 LTR ERVL -19 505 348 1 1458 1618 20 29 19 chr11 114488025 114488232 -7355624 - L1Md_F3 LINE L1 -1 6583 6375 1 1458 3200 109 22 22 chr11 114488232 114488569 -7355287 - RLTR28 LTR ERVL -177 347 1 1 1458 212 255 0 0 chr11 114488609 114488660 -7355196 + ID4 SINE ID 1 51 -32 1 1458 183 80 0 0 chr11 114488696 114488721 -7355135 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 1 1458 879 10 0 0 chr11 114488721 114488821 -7355035 + (GGGAA)n Simple_repeat Simple_repeat 2 101 0 1 1458 411 73 0 0 chr11 114489366 114489421 -7354435 + (TTA)n Simple_repeat Simple_repeat 3 57 0 1 1458 305 298 24 0 chr11 114489426 114489510 -7354346 - B3 SINE B2 -6 210 125 1 1458 280 310 128 80 chr11 114489539 114490241 -7353615 + L2b LINE L2 2187 2922 -497 1 1458 213 234 15 128 chr11 114490314 114490451 -7353405 + L2b LINE L2 3049 3175 -251 1 1458 345 100 0 0 chr11 114490624 114490674 -7353182 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 1 1458 534 311 66 0 chr11 114490675 114490826 -7353030 - ID_B1 SINE B4 -12 212 52 1 1458 504 0 0 0 chr11 114490867 114490923 -7352933 + (TTC)n Simple_repeat Simple_repeat 3 58 0 1 1458 1413 94 16 0 chr11 114490923 114491115 -7352741 - B2_Mm2 SINE B2 0 195 1 1 1458 182 333 0 0 chr11 114491130 114491178 -7352678 + L2a LINE L2 3357 3404 -22 1 1458 277 256 200 0 chr11 114491315 114491405 -7352451 + PB1D10 SINE Alu 4 111 -6 1 1458 893 216 34 17 chr11 114491420 114491599 -7352257 + B3A SINE B2 1 182 -16 1 1458 234 331 76 35 chr11 114492182 114492326 -7351530 + MLT1A1 LTR MaLR 19 168 -240 1 1458 485 210 9 48 chr11 114492345 114492450 -7351406 + PB1D10 SINE Alu 5 105 -12 1 1458 237 65 0 0 chr11 114492544 114492575 -7351281 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1458 856 164 15 7 chr11 114492576 114492711 -7351145 - B1_Mur1 SINE Alu -12 137 2 1 1458 559 281 128 19 chr11 114492793 114493051 -7350805 + B4A SINE B4 1 286 -6 1 1458 214 295 16 0 chr11 114493052 114493113 -7350743 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 1 1458 220 133 89 0 chr11 114493054 114493099 -7350757 + (CATG)n Simple_repeat Simple_repeat 3 51 0 1 1458 650 146 10 0 chr11 114493178 114493281 -7350575 + B1_Mur1 SINE Alu 40 143 -6 1 1458 628 246 31 68 chr11 114493299 114493521 -7350335 + B3 SINE B2 1 214 -2 1 1458 705 208 49 0 chr11 114493946 114494090 -7349766 + B3 SINE B2 66 216 0 1 1458 234 91 0 0 chr11 114494105 114494138 -7349718 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1458 1224 101 0 0 chr11 114494138 114494316 -7349540 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 1458 225 111 28 0 chr11 114494541 114494577 -7349279 + B1_Mus2 SINE Alu 98 134 -13 1 1458 180 0 0 0 chr11 114494577 114494597 -7349259 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1458 310 310 107 70 chr11 114494607 114494822 -7349034 + B4A SINE B4 52 274 -18 1 1458 497 127 0 25 chr11 114495181 114495262 -7348594 - MTC LTR MaLR 0 421 343 1 1458 1559 119 8 4 chr11 114495258 114495494 -7348362 - MTC LTR MaLR -183 238 2 1 1458 447 275 35 136 chr11 114495497 114495695 -7348161 + MTD LTR MaLR 6 183 -196 1 1458 810 162 7 14 chr11 114495696 114495834 -7348022 + B1_Mur1 SINE Alu 2 138 -11 1 1458 560 205 6 0 chr11 114495834 114496005 -7347851 + (TAGA)n Simple_repeat Simple_repeat 1 172 0 1 1458 892 187 88 26 chr11 114496018 114496210 -7347646 + MTD LTR MaLR 197 400 -19 1 1458 212 330 33 57 chr11 114496888 114497010 -7346846 - L2a LINE L2 -10 3416 3298 1 1458 318 50 0 0 chr11 114497601 114497641 -7346215 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1458 723 201 0 0 chr11 114498389 114498548 -7345308 + (TG)n Simple_repeat Simple_repeat 1 159 0 1 1458 226 175 25 0 chr11 114498631 114498671 -7345185 - L2b LINE L2 0 3375 3335 1 1458 832 158 63 28 chr11 114499168 114499311 -7344545 - B1_Mur2 SINE Alu 0 149 2 1 1458 329 329 69 56 chr11 114499460 114499692 -7344164 - MLT1K LTR MaLR -327 268 34 1 1458 222 111 21 43 chr11 114499949 114499996 -7343860 + C-rich Low_complexity Low_complexity 2 47 0 1 1458 472 252 7 73 chr11 114500283 114500433 -7343423 + ID_B1 SINE B4 85 224 0 1 1458 207 0 0 0 chr11 114500597 114500620 -7343236 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1458 231 61 0 0 chr11 114500629 114500662 -7343194 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 1458 456 182 0 0 chr11 114501706 114501794 -7342062 + (CATATA)n Simple_repeat Simple_repeat 5 92 0 4 1458 457 207 35 80 chr11 114501795 114501934 -7341922 - B3 SINE B2 -14 202 1 5 1458 568 59 12 12 chr11 114501946 114502032 -7341824 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1458 639 278 66 47 chr11 114503049 114503306 -7340550 + ORR1E LTR MaLR 97 358 -1 7 1458 264 250 12 24 chr11 114503920 114504002 -7339854 + C-rich Low_complexity Low_complexity 2 82 0 8 1458 378 269 0 0 chr11 114504239 114504332 -7339524 - BC1_Mm scRNA scRNA -56 96 4 9 1458 528 291 123 20 chr11 114504354 114504557 -7339299 + ID_B1 SINE B4 1 224 0 1 1458 259 281 0 30 chr11 114504571 114504637 -7339219 - B1F SINE Alu -84 65 2 1 1458 795 206 38 52 chr11 114504638 114504704 -7339152 - B3 SINE B2 -1 215 151 1 1458 261 0 0 0 chr11 114504704 114504733 -7339123 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1458 795 206 38 52 chr11 114504733 114504876 -7338980 - B3 SINE B2 -66 150 9 1 1458 1240 61 0 0 chr11 114505022 114505169 -7338687 + B1_Mus2 SINE Alu 1 147 0 1 1458 470 281 0 9 chr11 114505224 114505339 -7338517 + PB1D10 SINE Alu 1 114 -3 1 1458 312 250 154 57 chr11 114506046 114506169 -7337687 + ID_B1 SINE B4 1 135 -89 1 1458 477 0 0 0 chr11 114506171 114506224 -7337632 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1458 456 19 0 0 chr11 114506360 114506413 -7337443 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1458 364 306 16 16 chr11 114506743 114506869 -7336987 + (TGGA)n Simple_repeat Simple_repeat 3 128 0 1 1458 920 207 15 45 chr11 114506875 114507141 -7336715 + RMER19B LTR ERVK 6 223 -679 2 1458 269 208 0 0 chr11 114507158 114507208 -7336648 + RMER19B LTR ERVK 349 398 -504 2 1458 2305 88 3 0 chr11 114507208 114507526 -7336330 + ORR1A2 LTR MaLR 1 319 -8 2 1458 284 333 23 8 chr11 114507536 114507669 -7336187 + (TGGA)n Simple_repeat Simple_repeat 1 135 0 2 1458 256 257 18 0 chr11 114507690 114507803 -7336053 + (TGGA)n Simple_repeat Simple_repeat 3 117 0 2 1458 1575 223 109 3 chr11 114507841 114508179 -7335677 - ORR1D1 LTR MaLR 0 374 1 2 1458 279 200 14 41 chr11 114508703 114508776 -7335080 + PB1D10 SINE Alu 45 115 -2 2 1458 239 0 0 31 chr11 114508827 114508859 -7334997 + (TTA)n Simple_repeat Simple_repeat 1 31 0 2 1458 397 258 75 0 chr11 114508958 114509051 -7334805 - RSINE1 SINE B4 -63 102 3 2 1458 585 245 28 14 chr11 114509053 114509194 -7334662 - B1F2 SINE Alu -2 147 5 2 1458 276 30 0 0 chr11 114509343 114509376 -7334480 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1458 302 269 192 48 chr11 114509376 114509501 -7334355 - RSINE1 SINE B4 -22 143 1 2 1458 247 330 20 0 chr11 114509501 114509598 -7334258 - MER20 DNA MER1_type -65 154 56 3 1458 192 40 0 0 chr11 114510247 114510272 -7333584 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1458 356 302 54 70 chr11 114510282 114510489 -7333367 - MLT1E LTR MaLR 0 654 452 3 1458 337 216 116 9 chr11 114510517 114510629 -7333227 - MLT1E LTR MaLR -394 260 137 3 1458 474 219 0 19 chr11 114510656 114510763 -7333093 - MLT1A1 LTR MaLR -12 396 292 3 1458 218 32 32 0 chr11 114510907 114510938 -7332918 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1458 1001 167 124 10 chr11 114510946 114511140 -7332716 - B3 SINE B2 0 216 1 3 1458 545 173 26 26 chr11 114511144 114511257 -7332599 - PB1D10 SINE Alu -2 115 3 3 1458 718 118 9 0 chr11 114511283 114511393 -7332463 - ORR1A3 LTR MaLR -95 231 121 3 1458 778 93 0 0 chr11 114511388 114511495 -7332361 + ORR1A4 LTR MaLR 223 329 0 3 1458 276 347 0 0 chr11 114511768 114511863 -7331993 - MLT1E LTR MaLR -327 185 91 3 1458 338 328 45 83 chr11 114511949 114512082 -7331774 - MTE2b LTR MaLR -46 333 206 3 1458 1185 61 0 13 chr11 114512352 114512501 -7331355 + B1_Mm SINE Alu 1 147 0 4 1458 237 65 0 0 chr11 114512509 114512540 -7331316 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 4 1458 395 311 41 58 chr11 114512637 114512746 -7331110 - Lx8 LINE L1 -142 7331 7227 4 1458 561 68 0 0 chr11 114512746 114512820 -7331036 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1458 395 311 41 58 chr11 114512820 114512881 -7330975 - Lx8 LINE L1 -247 7226 7164 4 1458 379 303 43 23 chr11 114512881 114513111 -7330745 - MTE2b LTR MaLR -184 235 9 3 1458 646 244 142 102 chr11 114513208 114513344 -7330512 + ID_B1 SINE B4 1 156 -68 4 1458 1474 74 16 0 chr11 114513344 114513534 -7330322 + B2_Mm1a SINE B2 1 193 0 4 1458 646 244 142 102 chr11 114513534 114513602 -7330254 + ID_B1 SINE B4 157 213 -11 4 1458 207 0 0 0 chr11 114513602 114513625 -7330231 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1458 1494 22 79 0 chr11 114514626 114514643 -7329213 - B2_Mm1a SINE B2 -1 192 176 4 1458 207 0 0 0 chr11 114514643 114514666 -7329190 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1458 1494 22 79 0 chr11 114514666 114514826 -7329030 - B2_Mm1a SINE B2 -18 175 2 4 1458 1277 197 5 5 chr11 114514870 114515089 -7328767 + ID_B1 SINE B4 1 219 -5 4 1458 299 272 11 32 chr11 114515350 114515445 -7328411 - RMER5 LTR ERV1 0 534 442 5 1458 607 283 52 0 chr11 114515452 114515625 -7328231 + B3A SINE B2 1 182 -16 5 1458 215 220 0 0 chr11 114515625 114515675 -7328181 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1458 276 309 321 0 chr11 114515694 114515862 -7327994 - RMER5 LTR ERV1 -245 289 68 5 1458 216 0 0 0 chr11 114517848 114517872 -7325984 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1458 498 17 0 0 chr11 114518325 114518384 -7325472 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1458 1305 78 22 16 chr11 114519466 114519649 -7324207 + B2_Mm1t SINE B2 2 185 -8 5 1458 1251 83 65 0 chr11 114519687 114519856 -7324000 + B2_Mm2 SINE B2 1 180 -15 5 1458 244 368 8 46 chr11 114520377 114520508 -7323348 + ID_B1 SINE B4 80 205 -19 5 1458 447 295 15 15 chr11 114520398 114520529 -7323327 + B1F1 SINE Alu 18 148 -1 5 1458 3208 21 2 106 chr11 114520721 114521156 -7322700 + RLTR10 LTR ERVK 1 390 0 5 1458 15549 31 32 10 chr11 114521158 114523098 -7320758 + RLTR10-int LTR ERVK 3 1984 -3 5 1458 3208 21 2 106 chr11 114523100 114523535 -7320321 + RLTR10 LTR ERVK 1 390 0 5 1458 817 222 106 0 chr11 114523761 114523950 -7319906 + ID_B1 SINE B4 3 211 -13 6 1458 390 42 0 0 chr11 114523950 114523998 -7319858 + (GGA)n Simple_repeat Simple_repeat 2 49 0 6 1458 191 358 0 0 chr11 114525655 114525722 -7318134 - MIR SINE MIR 0 262 196 6 1458 582 185 0 65 chr11 114526439 114526527 -7317329 + polypurine Low_complexity Low_complexity 2 80 0 6 1458 1121 81 0 26 chr11 114526527 114526679 -7317177 + B1_Mus1 SINE Alu 1 148 0 6 1458 582 185 0 65 chr11 114526679 114526775 -7317081 + polypurine Low_complexity Low_complexity 81 174 0 6 1458 734 246 83 25 chr11 114526843 114527047 -7316809 + ID_B1 SINE B4 9 224 0 6 1458 829 197 7 7 chr11 114527048 114527196 -7316660 + B1_Mur3 SINE Alu 1 148 -1 6 1458 233 245 94 75 chr11 114527234 114527313 -7316543 + RMER17C LTR ERVK 1 93 -317 6 1458 636 81 0 0 chr11 114527313 114527400 -7316456 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 6 1458 233 245 94 75 chr11 114527400 114527479 -7316377 + RMER17C LTR ERVK 94 162 -248 6 1458 992 167 53 50 chr11 114527774 114528190 -7315666 + RMER17C LTR ERVK 41 388 -22 7 1458 799 148 14 7 chr11 114528195 114528338 -7315518 - RMER10B LTR ERVL -254 144 1 7 1458 1316 14 0 0 chr11 114528827 114528974 -7314882 + B1_Mm SINE Alu 1 147 0 7 1458 321 26 0 0 chr11 114528979 114529017 -7314839 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1458 894 246 44 0 chr11 114529279 114529482 -7314374 + B3 SINE B2 5 216 0 7 1458 1312 7 7 0 chr11 114529486 114529632 -7314224 + B1_Mm SINE Alu 1 147 0 7 1458 24 32 0 0 chr11 114529632 114529663 -7314193 + AT_rich Low_complexity Low_complexity 1 31 0 7 1458 337 196 11 6 chr11 114530460 114530552 -7313304 + PB1D9 SINE Alu 37 120 0 7 1458 239 310 49 20 chr11 114530615 114530717 -7313139 + PB1D10 SINE Alu 1 105 -12 7 1458 232 276 121 10 chr11 114530762 114530861 -7312995 + PB1D10 SINE Alu 1 110 -7 7 1458 342 305 40 66 chr11 114531498 114531649 -7312207 - B1_Mm SINE Alu 0 147 1 8 1458 334 400 39 0 chr11 114531683 114531813 -7312043 - RSINE1 SINE B4 -29 136 2 8 1458 581 280 38 11 chr11 114532035 114532219 -7311637 + ID_B1 SINE B4 27 215 -9 8 1458 238 201 209 124 chr11 114532502 114532655 -7311201 + B3A SINE B2 28 193 -5 8 1458 738 84 244 0 chr11 114533343 114533462 -7310394 + B1_Mus1 SINE Alu 1 148 0 8 1458 302 235 138 23 chr11 114534232 114534319 -7309537 - PB1D10 SINE Alu -4 113 17 8 1458 290 297 113 38 chr11 114534267 114534400 -7309456 - ID_B1 SINE B4 -76 148 6 8 1458 258 134 130 29 chr11 114535174 114535243 -7308613 + B1_Mur2 SINE Alu 69 144 -5 8 1458 1237 34 14 0 chr11 114536080 114536226 -7307630 + B1_Mus1 SINE Alu 1 148 0 8 1458 252 0 0 0 chr11 114536226 114536254 -7307602 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1458 328 145 81 0 chr11 114536272 114536334 -7307522 + B1_Mur2 SINE Alu 70 136 -13 9 1458 461 279 8 15 chr11 114536452 114536583 -7307273 - ID_B1 SINE B4 -4 220 91 9 1458 180 0 0 0 chr11 114537461 114537481 -7306375 + (CCCCAG)n Simple_repeat Simple_repeat 1 20 0 9 1458 217 75 100 0 chr11 114538289 114538329 -7305527 + C-rich Low_complexity Low_complexity 2 45 0 9 1458 447 35 0 0 chr11 114539342 114539399 -7304457 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1458 1278 21 7 0 chr11 114539399 114539544 -7304312 + B1_Mus1 SINE Alu 3 148 0 9 1458 444 237 0 0 chr11 114539563 114539694 -7304162 + (TG)n Simple_repeat Simple_repeat 1 131 0 9 1458 294 93 0 0 chr11 114539783 114539826 -7304030 - RMER13B LTR ERVK -865 43 1 9 1458 641 215 13 34 chr11 114539962 114540111 -7303745 - B3 SINE B2 -69 147 2 9 1458 423 225 29 170 chr11 114540143 114540314 -7303542 - B1_Mur4 SINE Alu -2 148 2 9 1458 569 257 20 147 chr11 114540229 114540480 -7303376 - ID_B1 SINE B4 0 224 6 1 1458 217 279 123 19 chr11 114540512 114540618 -7303238 - PB1 SINE Alu 0 127 11 1 1458 882 231 37 28 chr11 114541303 114541521 -7302335 + ID_B1 SINE B4 1 220 -4 1 1458 266 211 70 0 chr11 114541548 114541605 -7302251 + ID_B1 SINE B4 151 211 -13 1 1458 206 57 0 54 chr11 114542157 114542194 -7301662 + (CCCCCT)n Simple_repeat Simple_repeat 4 38 0 1 1458 518 262 117 0 chr11 114542775 114542920 -7300936 + RSINE1 SINE B4 2 163 -2 1 1458 1200 61 0 20 chr11 114542933 114543083 -7300773 + B1_Mus1 SINE Alu 1 147 -1 1 1458 26 64 0 0 chr11 114543097 114543144 -7300712 + AT_rich Low_complexity Low_complexity 1 47 0 1 1458 249 33 0 0 chr11 114543158 114543188 -7300668 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1458 1218 41 14 0 chr11 114543188 114543333 -7300523 - B1_Mm SINE Alu 0 147 1 1 1458 240 35 0 0 chr11 114543348 114543377 -7300479 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1458 1004 76 27 40 chr11 114543377 114543516 -7300340 - B1_Mus1 SINE Alu -10 138 1 1 1458 264 77 0 0 chr11 114543564 114543603 -7300253 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1458 341 324 61 148 chr11 114543646 114543943 -7299913 - B4A SINE B4 -20 272 2 1 1458 229 314 105 0 chr11 114544477 114544582 -7299274 - PB1D10 SINE Alu 0 117 2 1 1458 369 248 95 0 chr11 114544601 114544706 -7299150 + B1F1 SINE Alu 1 115 -34 1 1458 1574 135 12 176 chr11 114544925 114545339 -7298517 - ORR1B2 LTR MaLR -21 346 1 1 1458 266 171 343 0 chr11 114545349 114545419 -7298437 - ID_B1 SINE B4 0 224 131 1 1458 444 104 0 0 chr11 114545941 114546008 -7297848 + (GGA)n Simple_repeat Simple_repeat 2 68 0 1 1458 396 103 0 0 chr11 114546666 114546724 -7297132 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1458 901 305 101 20 chr11 114547151 114547496 -7296360 - MTEa LTR MaLR 0 379 7 1 1458 21 36 0 0 chr11 114548463 114548491 -7295365 + AT_rich Low_complexity Low_complexity 1 28 0 1 1458 1071 50 49 28 chr11 114548491 114548635 -7295221 + B1_Mus2 SINE Alu 1 147 0 1 1458 323 105 18 0 chr11 114548834 114548891 -7294965 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 1 1458 252 0 0 0 chr11 114548901 114548929 -7294927 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1458 427 325 71 43 chr11 114548962 114549242 -7294614 + L3 LINE CR1 3564 3851 -638 1 1458 342 0 0 0 chr11 114549276 114549314 -7294542 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1458 430 224 152 18 chr11 114549370 114549530 -7294326 + ID_B1 SINE B4 78 242 -50 1 1458 1407 81 16 11 chr11 114549743 114549931 -7293925 - B2_Mm2 SINE B2 -5 190 2 1 1458 373 222 172 79 chr11 114550030 114550245 -7293611 + L1MC1 LINE L1 5928 6162 -171 1 1458 28 0 0 0 chr11 114550357 114550385 -7293471 + AT_rich Low_complexity Low_complexity 1 28 0 1 1458 288 102 0 17 chr11 114550392 114550452 -7293404 - B2_Mm2 SINE B2 0 195 137 1 1458 255 229 0 32 chr11 114550441 114550504 -7293352 - B3 SINE B2 -107 109 49 1 1458 1190 116 41 0 chr11 114550523 114550695 -7293161 - B2_Mm1t SINE B2 -14 179 1 1 1458 894 240 33 24 chr11 114550702 114550915 -7292941 - B3 SINE B2 0 216 2 1 1458 252 86 0 0 chr11 114550927 114550962 -7292894 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1458 394 106 258 45 chr11 114550966 114551055 -7292801 - B1_Mus1 SINE Alu -31 117 10 1 1458 317 268 0 0 chr11 114551094 114551165 -7292691 + ID2 SINE ID 3 73 -10 1 1458 698 302 70 39 chr11 114551202 114551460 -7292396 + B4A SINE B4 27 292 0 1 1458 371 274 37 39 chr11 114551976 114552105 -7291751 - B1F2 SINE Alu -2 146 11 1 1458 311 289 133 0 chr11 114552194 114552284 -7291572 - ID_B1 SINE B4 -121 103 2 1 1458 198 0 0 0 chr11 114552958 114552980 -7290876 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1458 392 320 73 0 chr11 114554036 114554186 -7289670 - MER5A DNA MER1_type -26 163 3 1 1458 313 336 18 0 chr11 114554516 114554629 -7289227 - PB1D10 SINE Alu -1 116 2 1 1458 234 180 17 68 chr11 114554652 114554727 -7289129 - B1_Mus2 SINE Alu 0 149 78 1 1458 597 261 129 5 chr11 114554862 114555055 -7288801 - ID_B1 SINE B4 -2 222 6 1 1458 359 177 302 26 chr11 114555088 114555204 -7288652 - B1_Mur4 SINE Alu 0 150 3 1 1458 243 91 59 29 chr11 114555215 114555283 -7288573 + T-rich Low_complexity Low_complexity 1 70 0 1 1458 579 214 8 25 chr11 114555283 114555403 -7288453 - PB1D7 SINE Alu 0 120 3 1 1458 1659 99 19 22 chr11 114555686 114555955 -7287901 - RLTR11A LTR ERVK 0 528 261 1 1458 488 241 27 27 chr11 114556052 114556201 -7287655 + B1F2 SINE Alu 1 149 0 1 1459 479 252 70 0 chr11 114557021 114557136 -7286720 + ID_B1 SINE B4 100 222 -2 1 1459 270 312 62 23 chr11 114557025 114557153 -7286703 - YREP_Mm Unknown Unknown -1518 294 162 1 1459 1097 98 0 0 chr11 114557345 114557488 -7286368 + B1_Mus2 SINE Alu 5 147 0 1 1459 192 40 0 0 chr11 114557502 114557527 -7286329 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 1 1459 690 247 108 26 chr11 114558258 114558453 -7285403 - MTEa LTR MaLR -9 370 160 1 1459 1718 146 57 26 chr11 114558474 114558825 -7285031 - MTC LTR MaLR 0 421 50 1 1459 1231 55 0 0 chr11 114558829 114558975 -7284881 - B1_Mm SINE Alu 0 147 2 1 1459 947 165 56 10 chr11 114558975 114559171 -7284685 - URR1A DNA MER1_type -21 205 1 1 1459 629 210 0 16 chr11 114559171 114559278 -7284578 - MTC LTR MaLR -312 109 5 1 1459 513 322 7 20 chr11 114559313 114559462 -7284394 + RSINE1 SINE B4 3 149 -16 1 1459 198 0 0 0 chr11 114559462 114559484 -7284372 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1459 261 0 0 0 chr11 114560452 114560481 -7283375 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1459 1128 65 0 0 chr11 114560481 114560619 -7283237 - B1_Mm SINE Alu -9 138 1 1 1459 192 343 48 10 chr11 114561349 114561452 -7282404 + MIR3 SINE MIR 91 197 -11 1 1459 448 270 98 68 chr11 114561725 114561888 -7281968 + ID_B1 SINE B4 53 220 -4 1 1459 1177 88 42 57 chr11 114562353 114562545 -7281311 + B2_Mm2 SINE B2 2 190 -5 1 1459 26 0 0 0 chr11 114562619 114562645 -7281211 + AT_rich Low_complexity Low_complexity 1 26 0 1 1459 225 385 46 0 chr11 114562762 114562892 -7280964 - MER3 DNA MER1_type -73 136 1 1 1459 369 109 0 0 chr11 114564019 114564074 -7279782 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1459 348 43 0 0 chr11 114564218 114564264 -7279592 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1459 421 285 73 8 chr11 114564649 114564773 -7279083 + B1F SINE Alu 10 141 -8 1 1459 929 208 13 92 chr11 114564775 114565003 -7278853 + B3 SINE B2 1 210 -6 1 1459 312 282 249 22 chr11 114565112 114565293 -7278563 + ID_B1 SINE B4 3 224 0 1 1459 358 240 30 30 chr11 114566383 114566482 -7277374 + MIR SINE MIR 73 171 -91 1 1459 1666 42 0 0 chr11 114567313 114567505 -7276351 - B2_Mm1a SINE B2 0 193 2 1 1459 405 0 0 0 chr11 114567985 114568030 -7275826 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1459 676 180 0 54 chr11 114568030 114568159 -7275697 + B1_Mur2 SINE Alu 15 136 -13 1 1459 339 262 143 32 chr11 114568407 114568562 -7275294 - MIR SINE MIR -77 185 20 1 1459 318 339 24 0 chr11 114569256 114569383 -7274473 - MER5A1 DNA MER1_type -35 131 2 1 1459 233 241 37 0 chr11 114569663 114569717 -7274139 - L1_Mur1 LINE L1 -6833 149 94 1 1459 225 375 106 0 chr11 114570545 114570649 -7273207 + PB1D10 SINE Alu 2 116 -1 1 1459 657 202 0 16 chr11 114570667 114570788 -7273068 + PB1D9 SINE Alu 1 119 -1 1 1459 180 0 0 0 chr11 114570793 114570813 -7273043 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1459 303 160 40 0 chr11 114570814 114570889 -7272967 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1459 219 69 0 0 chr11 114571815 114571844 -7272012 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1459 1236 130 130 0 chr11 114572640 114572840 -7271016 + URR1A DNA MER1_type 1 226 0 1 1459 367 175 262 0 chr11 114572880 114572960 -7270896 - PB1D7 SINE Alu -17 103 3 1 1459 922 325 43 18 chr11 114573179 114573574 -7270282 - MER67C LTR ERV1 0 711 307 1 1459 504 0 0 0 chr11 114573596 114573652 -7270204 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1459 1121 210 5 9 chr11 114573923 114574139 -7269717 - B3 SINE B2 -1 215 1 1 1459 299 201 0 8 chr11 114574157 114574228 -7269628 + ID4 SINE ID 3 70 -82 1 1459 1168 182 188 58 chr11 114574322 114574467 -7269389 - MTD LTR MaLR -2 417 221 1 1459 1532 39 22 0 chr11 114574467 114574645 -7269211 - B2_Mm2 SINE B2 -11 184 3 1 1459 1168 182 188 58 chr11 114574645 114574745 -7269111 - MTD LTR MaLR -199 220 122 1 1459 873 65 186 0 chr11 114574745 114574869 -7268987 + B1_Mus2 SINE Alu 1 147 0 1 1459 1168 182 188 58 chr11 114574869 114574983 -7268873 - MTD LTR MaLR -298 121 12 1 1459 319 215 35 71 chr11 114575022 114575035 -7268821 - PB1D10 SINE Alu -9 108 27 1 1459 360 152 0 83 chr11 114575035 114575107 -7268749 - ID_B1 SINE B4 -51 173 108 1 1459 389 275 44 14 chr11 114575459 114575606 -7268250 + MIRb SINE MIR 20 164 -98 1 1459 198 0 0 0 chr11 114575636 114575658 -7268198 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1459 1185 36 0 0 chr11 114575658 114575795 -7268061 - B1_Mm SINE Alu -10 137 1 1 1459 477 0 0 0 chr11 114576234 114576287 -7267569 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1459 625 225 92 13 chr11 114576290 114576443 -7267413 - B3A SINE B2 -33 165 1 2 1459 409 281 0 109 chr11 114576447 114576575 -7267281 - ID_B1 SINE B4 -1 223 110 2 1459 240 356 11 0 chr11 114577828 114577918 -7265938 - MER5A DNA MER1_type -96 93 3 2 1459 741 219 169 0 chr11 114578259 114578442 -7265414 + B3 SINE B2 3 216 0 2 1459 919 171 117 20 chr11 114578528 114578725 -7265131 + URR1A DNA MER1_type 1 216 -10 2 1459 225 83 0 0 chr11 114578823 114578859 -7264997 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1459 849 169 49 0 chr11 114579042 114579184 -7264672 + B1_Mur4 SINE Alu 1 149 -1 2 1459 528 204 0 0 chr11 114579282 114579380 -7264476 + B4 SINE B4 125 222 -70 2 1459 1193 108 11 11 chr11 114579388 114579565 -7264291 + B2_Mm2 SINE B2 1 177 -18 2 1459 216 0 0 0 chr11 114579585 114579609 -7264247 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1459 397 272 76 56 chr11 114580106 114580250 -7263606 + B1F1 SINE Alu 3 149 0 2 1459 243 228 53 0 chr11 114580288 114580345 -7263511 - MER2B DNA MER2_type -254 82 23 2 1459 502 182 43 43 chr11 114581377 114581492 -7262364 - PB1D9 SINE Alu 0 120 6 2 1459 815 150 14 7 chr11 114581534 114581675 -7262181 - B1_Mus2 SINE Alu 0 147 6 2 1459 263 317 31 70 chr11 114581561 114581690 -7262166 - MT2B LTR ERVL -323 278 155 2 1459 22 0 0 0 chr11 114581693 114581715 -7262141 + AT_rich Low_complexity Low_complexity 1 22 0 2 1459 465 340 43 5 chr11 114582468 114582654 -7261202 + B3A SINE B2 6 198 0 2 1459 767 193 117 17 chr11 114582665 114582844 -7261012 + B3 SINE B2 1 197 -19 2 1459 502 237 88 0 chr11 114582844 114582958 -7260898 - B1_Mur1 SINE Alu -19 130 7 2 1459 235 206 85 110 chr11 114582885 114582967 -7260889 - MT2B LTR ERVL -361 240 161 2 1459 1134 70 14 0 chr11 114582967 114583110 -7260746 - B1_Mus2 SINE Alu -1 146 2 2 1459 351 258 236 24 chr11 114583131 114583199 -7260657 - B1_Mur3 SINE Alu 0 149 69 2 1459 1382 97 38 0 chr11 114583199 114583384 -7260472 - B2_Mm2 SINE B2 -1 194 3 2 1459 351 258 236 24 chr11 114583384 114583438 -7260418 - B1_Mur3 SINE Alu -81 68 1 2 1459 387 0 0 0 chr11 114583605 114583648 -7260208 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1459 485 250 28 21 chr11 114583726 114583869 -7259987 - B4A SINE B4 -120 172 29 2 1459 964 226 9 41 chr11 114584779 114585000 -7258856 + B3 SINE B2 3 216 0 2 1459 298 227 15 0 chr11 114585066 114585132 -7258724 - ID4_ SINE ID -11 72 6 2 1459 576 95 0 0 chr11 114585445 114585529 -7258327 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1459 271 136 17 17 chr11 114585543 114585603 -7258253 + GA-rich Low_complexity Low_complexity 1 60 0 2 1459 525 215 65 16 chr11 114585628 114585751 -7258105 - B1_Mur1 SINE Alu -4 145 17 2 1459 360 262 93 28 chr11 114585635 114585858 -7257998 - B4 SINE B4 0 224 41 2 1459 241 319 22 121 chr11 114585664 114585896 -7257960 - MT2B LTR ERVL -342 259 51 2 1459 214 250 67 0 chr11 114586076 114586136 -7257720 + PB1D10 SINE Alu 54 117 0 2 1459 308 219 68 0 chr11 114586988 114587061 -7256795 + ID2 SINE ID 3 80 -3 2 1459 1810 166 77 19 chr11 114587062 114587271 -7256585 - ORR1C2 LTR MaLR 0 384 181 2 1459 450 0 0 0 chr11 114587271 114587321 -7256535 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1459 1810 166 77 19 chr11 114587321 114587474 -7256382 - ORR1C2 LTR MaLR -204 180 3 2 1459 1091 82 85 34 chr11 114587614 114587790 -7256066 + B2_Mm2 SINE B2 2 186 -9 2 1459 746 231 18 24 chr11 114587796 114587960 -7255896 - RSINE1 SINE B4 0 165 3 2 1459 312 277 9 56 chr11 114588042 114588149 -7255707 - RSINE1 SINE B4 -41 124 23 2 1459 484 227 25 8 chr11 114589176 114589296 -7254560 + B1F SINE Alu 21 142 -7 2 1459 264 216 24 108 chr11 114589234 114589305 -7254551 + B4 SINE B4 167 230 -62 2 1459 699 251 35 30 chr11 114589305 114589468 -7254388 + B3A SINE B2 1 169 -29 2 1459 468 0 0 0 chr11 114589468 114589520 -7254336 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1459 699 251 35 30 chr11 114589520 114589553 -7254303 + B3A SINE B2 170 198 0 2 1459 225 245 52 3 chr11 114590053 114590122 -7253734 + ID4 SINE ID 1 71 -12 2 1459 369 0 0 0 chr11 114590124 114590165 -7253691 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1459 392 97 16 0 chr11 114590166 114590228 -7253628 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1459 531 257 57 7 chr11 114591006 114591147 -7252709 - B1F SINE Alu 0 149 2 2 1459 265 297 137 18 chr11 114591346 114591514 -7252342 - L1M4 LINE L1 -1211 4935 4748 2 1459 260 53 26 0 chr11 114591588 114591626 -7252230 + (ATTG)n Simple_repeat Simple_repeat 1 39 0 2 1459 592 293 29 0 chr11 114591639 114591779 -7252077 - B1F2 SINE Alu -5 144 1 2 1459 993 153 123 31 chr11 114591896 114592091 -7251765 - B3 SINE B2 -3 213 1 2 1459 387 0 0 0 chr11 114592418 114592461 -7251395 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1459 419 290 0 31 chr11 114592461 114592589 -7251267 - RSINE1 SINE B4 -29 136 13 2 1459 242 317 201 10 chr11 114592717 114592921 -7250935 + MIRb SINE MIR 14 256 -6 2 1459 450 112 126 63 chr11 114592977 114593072 -7250784 + B1F2 SINE Alu 41 141 -8 2 1459 396 0 0 0 chr11 114593091 114593135 -7250721 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1459 222 118 0 0 chr11 114593136 114593170 -7250686 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 2 1459 592 167 167 0 chr11 114593188 114593314 -7250542 - B3A SINE B2 -50 148 2 2 1459 454 283 92 0 chr11 114593315 114593435 -7250421 - B1F SINE Alu -9 140 10 2 1459 299 309 74 87 chr11 114593435 114593464 -7250392 - ID_B1 SINE B4 -9 215 69 2 1459 1222 27 0 45 chr11 114593481 114593635 -7250221 - B1_Mus1 SINE Alu 0 148 2 2 1459 688 187 0 0 chr11 114593669 114593792 -7250064 - ID_B1 SINE B4 -2 222 100 2 1459 1019 154 26 111 chr11 114593810 114594044 -7249812 - B3 SINE B2 -1 215 2 2 1459 239 256 32 95 chr11 114594718 114594813 -7249043 - RMER30 DNA MER1_type -30 172 84 2 1459 591 112 0 0 chr11 114594815 114594904 -7248952 + (TTC)n Simple_repeat Simple_repeat 1 89 0 2 1459 355 291 29 10 chr11 114594904 114595008 -7248848 - ID_B1 SINE B4 0 224 119 2 1459 204 143 0 0 chr11 114595016 114595058 -7248798 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1459 189 0 0 0 chr11 114595082 114595103 -7248753 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1459 584 226 45 8 chr11 114596186 114596320 -7247536 + RSINE1 SINE B4 3 141 -24 2 1459 504 236 58 53 chr11 114596653 114596841 -7247015 - RLTR23 LTR ERV1 0 430 242 2 1459 331 182 106 48 chr11 114597371 114597447 -7246409 + B3 SINE B2 101 182 -34 2 1459 282 56 0 0 chr11 114597447 114597483 -7246373 + (CATA)n Simple_repeat Simple_repeat 3 38 0 2 1459 331 182 106 48 chr11 114597483 114597510 -7246346 + B3 SINE B2 183 210 -6 2 1459 704 158 119 68 chr11 114597551 114597728 -7246128 + B2_Mm2 SINE B2 2 187 -8 2 1459 273 258 0 0 chr11 114597730 114597796 -7246060 - L1MC2 LINE L1 -17 6327 6262 2 1459 356 0 23 0 chr11 114597798 114597842 -7246014 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 2 1459 287 317 28 19 chr11 114597861 114597967 -7245889 + ID_B1 SINE B4 69 175 -49 2 1459 352 256 43 22 chr11 114597878 114597970 -7245886 + PB1D10 SINE Alu 7 100 -20 2 1459 342 0 0 0 chr11 114597982 114598020 -7245836 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1459 437 233 84 92 chr11 114598020 114598162 -7245694 + ID_B1 SINE B4 82 222 -2 2 1459 279 0 0 0 chr11 114598162 114598193 -7245663 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1459 753 12 0 0 chr11 114598196 114598282 -7245574 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 2 1459 206 62 0 30 chr11 114598533 114598566 -7245290 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 2 1459 736 291 78 0 chr11 114598571 114598777 -7245079 - ID_B1 SINE B4 -1 223 2 2 1459 1197 36 0 0 chr11 114598949 114599086 -7244770 + B1_Mm SINE Alu 2 138 -9 2 1459 271 60 20 20 chr11 114599086 114599137 -7244719 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1459 703 222 0 7 chr11 114599147 114599283 -7244573 + B1_Mur1 SINE Alu 7 141 -8 2 1459 390 226 164 50 chr11 114599353 114599493 -7244363 + ID_B1 SINE B4 15 170 -54 2 1459 243 160 320 0 chr11 114599433 114599508 -7244348 + PB1D10 SINE Alu 9 107 -10 2 1459 342 0 0 0 chr11 114599508 114599546 -7244310 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 2 1459 251 114 23 0 chr11 114599675 114599719 -7244137 - ID_B1 SINE B4 0 224 180 2 1459 533 219 19 88 chr11 114600744 114600904 -7242952 - RSINE1 SINE B4 -15 150 2 2 1459 378 0 0 0 chr11 114601134 114601176 -7242680 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1459 629 228 78 26 chr11 114602085 114602238 -7241618 + RSINE1 SINE B4 4 164 -1 2 1459 225 0 0 0 chr11 114602247 114602272 -7241584 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2 1459 225 0 0 0 chr11 114602280 114602305 -7241551 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1459 329 273 101 85 chr11 114603369 114603399 -7240457 - B2_Mm2 SINE B2 -4 191 163 2 1459 570 15 0 0 chr11 114603399 114603466 -7240390 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1459 561 273 101 85 chr11 114603466 114603623 -7240233 - B3A SINE B2 -33 162 1 2 1459 503 252 8 0 chr11 114603675 114603794 -7240062 - B3A SINE B2 -77 121 2 2 1459 1176 95 0 0 chr11 114603842 114604010 -7239846 + (TA)n Simple_repeat Simple_repeat 1 168 0 2 1459 570 282 35 21 chr11 114604020 114604165 -7239691 - RSINE1 SINE B4 -16 149 3 2 1459 51 65 0 0 chr11 114604176 114604269 -7239587 + AT_rich Low_complexity Low_complexity 1 93 0 3 1459 553 264 118 31 chr11 114604292 114604487 -7239369 - B3 SINE B2 -1 215 4 3 1459 594 265 36 6 chr11 114604967 114605134 -7238722 - RMER5 LTR ERV1 -12 522 351 3 1459 718 189 0 29 chr11 114605165 114605301 -7238555 + ID_B1 SINE B4 93 224 0 3 1459 624 61 0 15 chr11 114605433 114605533 -7238323 - B1F2 SINE Alu 0 149 54 3 1459 197 65 32 0 chr11 114605773 114605804 -7238052 + (GGGGA)n Simple_repeat Simple_repeat 3 34 0 3 1459 351 0 0 0 chr11 114605845 114605884 -7237972 + (TATTG)n Simple_repeat Simple_repeat 5 43 0 3 1459 230 213 11 148 chr11 114605884 114605972 -7237884 - ID4 SINE ID -7 76 1 3 1459 225 0 0 0 chr11 114605982 114606007 -7237849 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1459 1140 44 0 7 chr11 114606007 114606145 -7237711 - B1_Mus1 SINE Alu -10 138 2 3 1459 820 127 0 14 chr11 114606182 114606326 -7237530 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 3 1459 380 265 82 0 chr11 114606928 114607026 -7236830 + ID_B1 SINE B4 80 185 -39 3 1459 381 238 70 87 chr11 114607126 114607241 -7236615 + RSINE1 SINE B4 53 165 0 3 1459 375 264 21 0 chr11 114607301 114607421 -7236435 + B1F1 SINE Alu 25 149 0 3 1459 350 94 16 0 chr11 114608182 114608246 -7235610 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1459 628 264 68 17 chr11 114608389 114608566 -7235290 - B3 SINE B2 0 216 31 3 1459 985 68 120 0 chr11 114608601 114608734 -7235122 - B1_Mur4 SINE Alu -1 149 1 3 1459 574 282 32 63 chr11 114608745 114608983 -7234873 - RSINE1 SINE B4 -2 222 9 3 1459 301 266 12 37 chr11 114608990 114609072 -7234784 - ID_B1 SINE B4 -66 158 79 3 1459 801 129 63 21 chr11 114609361 114609504 -7234352 + B1_Mur2 SINE Alu 1 149 0 3 1459 273 29 0 0 chr11 114609507 114609541 -7234315 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 1459 280 314 42 28 chr11 114609656 114609800 -7234056 - L1MB2 LINE L1 -129 6042 5897 3 1459 686 109 9 0 chr11 114609800 114609910 -7233946 + (TTCC)n Simple_repeat Simple_repeat 4 114 0 3 1459 229 69 0 0 chr11 114609910 114609939 -7233917 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 1459 548 272 135 10 chr11 114609939 114610132 -7233724 - ID_B1 SINE B4 -7 217 1 3 1459 22 0 0 0 chr11 114610155 114610177 -7233679 + AT_rich Low_complexity Low_complexity 1 22 0 3 1459 215 284 0 11 chr11 114610180 114610269 -7233587 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1459 248 221 13 0 chr11 114610307 114610384 -7233472 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1459 494 256 82 38 chr11 114610384 114610542 -7233314 - RSINE1 SINE B4 0 165 1 3 1459 217 182 23 0 chr11 114610812 114610856 -7233000 + B3A SINE B2 1 45 -153 3 1459 554 290 34 17 chr11 114610852 114611031 -7232825 + B4A SINE B4 107 288 -4 3 1459 227 114 23 0 chr11 114611034 114611078 -7232778 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1459 474 193 6 28 chr11 114611171 114611347 -7232509 + (CA)n Simple_repeat Simple_repeat 2 173 0 3 1459 220 208 21 0 chr11 114611362 114611410 -7232446 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1459 667 130 62 9 chr11 114611925 114612093 -7231763 - RMER17A2 LTR ERVK -77 881 689 3 1459 740 167 0 0 chr11 114612163 114612289 -7231567 - B1_Mur4 SINE Alu -13 137 12 3 1459 1372 73 23 0 chr11 114612294 114612471 -7231385 - B2_Mm2 SINE B2 -14 181 1 3 1459 747 233 0 79 chr11 114612490 114612667 -7231189 + RSINE1 SINE B4 3 165 0 3 1459 567 29 0 0 chr11 114613310 114613379 -7230477 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1459 227 299 52 0 chr11 114613561 114613638 -7230218 + ID4_ SINE ID 2 82 -1 3 1459 675 223 183 0 chr11 114613647 114613822 -7230034 + ID_B1 SINE B4 18 224 0 3 1459 282 288 149 52 chr11 114614847 114615041 -7228815 - ID_B1 SINE B4 -10 214 2 3 1459 531 246 70 28 chr11 114615057 114615199 -7228657 - B1_Mur2 SINE Alu -1 148 1 3 1459 245 287 10 41 chr11 114615423 114615521 -7228335 - PB1D10 SINE Alu -19 98 4 3 1459 799 211 134 21 chr11 114616498 114616692 -7227164 + B3 SINE B2 1 216 0 3 1459 544 255 16 120 chr11 114616707 114616890 -7226966 + RSINE1 SINE B4 2 165 0 3 1459 444 278 47 23 chr11 114617075 114617204 -7226652 - B3A SINE B2 -65 133 2 3 1459 1673 31 5 0 chr11 114617706 114617898 -7225958 + B2_Mm1t SINE B2 1 193 0 3 1459 585 76 0 0 chr11 114618015 114618094 -7225762 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 3 1459 882 148 37 0 chr11 114619562 114619697 -7224159 + B1_Mur3 SINE Alu 2 141 -8 3 1459 204 217 0 0 chr11 114619697 114619743 -7224113 + GA-rich Low_complexity Low_complexity 1 46 0 3 1459 908 255 63 16 chr11 114619795 114620050 -7223806 + B4 SINE B4 11 277 -15 3 1459 386 317 40 61 chr11 114620520 114620718 -7223138 + MER20 DNA MER1_type 3 196 -23 3 1459 509 262 74 18 chr11 114620754 114620917 -7222939 + ID_B1 SINE B4 53 224 0 3 1459 522 238 172 0 chr11 114621348 114621470 -7222386 + MTEa LTR MaLR 1 143 -236 3 1459 1251 100 72 6 chr11 114621617 114621798 -7222058 - B2_Mm2 SINE B2 0 195 3 3 1459 325 237 128 26 chr11 114621833 114621950 -7221906 - B3 SINE B2 -1 215 87 3 1459 798 191 189 11 chr11 114622501 114622691 -7221165 - ID_B1 SINE B4 0 224 1 3 1459 554 253 85 40 chr11 114623150 114623327 -7220529 + MTEa LTR MaLR 32 216 -163 3 1459 719 228 64 0 chr11 114623360 114623531 -7220325 + MTEa LTR MaLR 198 379 0 3 1459 292 325 66 24 chr11 114623567 114623619 -7220237 - B4A SINE B4 -29 263 91 3 1459 512 257 0 9 chr11 114623619 114623733 -7220123 - PB1D7 SINE Alu -2 118 6 3 1459 1039 94 20 0 chr11 114623804 114623985 -7219871 + B2_Mm1t SINE B2 1 185 -10 3 1459 295 107 289 125 chr11 114623970 114624061 -7219795 + B2_Mm2 SINE B2 47 165 -30 3 1459 1367 75 32 11 chr11 114624061 114624250 -7219606 + B2_Mm1a SINE B2 1 193 0 3 1459 295 107 289 125 chr11 114624250 114624286 -7219570 + B2_Mm2 SINE B2 166 195 0 3 1459 216 214 0 0 chr11 114624287 114624329 -7219527 + A-rich Low_complexity Low_complexity 1 42 0 3 1459 1034 66 0 0 chr11 114624371 114624508 -7219348 + B1_Mus1 SINE Alu 11 147 -1 3 1459 355 303 27 27 chr11 114624564 114624676 -7219180 + PB1D7 SINE Alu 9 120 0 3 1459 279 0 0 0 chr11 114625417 114625448 -7218408 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1459 716 150 90 8 chr11 114625495 114625629 -7218227 + B1_Mur4 SINE Alu 1 145 -5 3 1459 261 0 0 0 chr11 114625685 114625714 -7218142 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1459 295 306 0 20 chr11 114625761 114625782 -7218074 - Charlie12 DNA MER1_type -2755 118 100 3 1459 493 281 34 7 chr11 114625782 114625929 -7217927 - RSINE1 SINE B4 -12 153 3 3 1459 295 306 0 20 chr11 114625929 114626007 -7217849 - Charlie12 DNA MER1_type -2774 99 22 3 1459 384 253 22 0 chr11 114625935 114626026 -7217830 + RMER30 DNA MER1_type 110 202 0 3 1459 1749 21 0 0 chr11 114629074 114629266 -7214590 + B2_Mm1t SINE B2 2 193 0 3 1459 521 314 34 68 chr11 114629360 114629596 -7214260 + B4A SINE B4 10 237 -55 3 1459 452 279 10 0 chr11 114629729 114629833 -7214023 + PB1D10 SINE Alu 3 107 -10 3 1459 568 197 19 0 chr11 114629867 114629991 -7213865 + B1_Mus2 SINE Alu 2 136 -14 3 1459 210 71 0 0 chr11 114629993 114630021 -7213835 + (ATGGTG)n Simple_repeat Simple_repeat 5 32 0 3 1459 909 252 55 32 chr11 114630685 114630902 -7212954 - ID_B1 SINE B4 -2 222 1 3 1459 369 0 0 0 chr11 114630945 114630986 -7212870 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1459 934 261 4 31 chr11 114632559 114632788 -7211068 + ID_B1 SINE B4 1 223 -1 3 1459 369 62 0 0 chr11 114632792 114632840 -7211016 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 3 1459 534 287 55 25 chr11 114633910 114634150 -7209706 - L1MB5 LINE L1 -179 5995 5726 3 1459 372 43 0 0 chr11 114634150 114634196 -7209660 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 3 1459 283 323 145 30 chr11 114634196 114634219 -7209637 - L1MB5 LINE L1 -443 5725 5703 3 1459 208 286 53 42 chr11 114634565 114634590 -7209266 - L4 LINE RTE -207 1822 1797 3 1459 315 49 0 0 chr11 114634590 114634631 -7209225 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1459 208 286 53 42 chr11 114634631 114634700 -7209156 - L4 LINE RTE -233 1796 1728 3 1459 292 304 125 0 chr11 114634986 114635098 -7208758 + MER20 DNA MER1_type 54 179 -40 3 1459 266 330 16 50 chr11 114635464 114635585 -7208271 + MLT1C LTR MaLR 31 147 -320 3 1459 799 234 121 11 chr11 114635603 114635793 -7208063 + ID_B1 SINE B4 3 213 -11 3 1459 648 207 8 0 chr11 114635793 114635914 -7207942 + B1_Mur3 SINE Alu 7 128 -21 3 1459 233 338 15 37 chr11 114636106 114636267 -7207589 + L2c LINE L2 3036 3193 -182 3 1459 569 237 8 8 chr11 114637932 114638051 -7205805 + PB1D7 SINE Alu 2 120 0 3 1459 244 271 136 58 chr11 114638495 114638667 -7205189 - MIRb SINE MIR -56 212 21 3 1459 333 0 0 0 chr11 114639808 114639845 -7204011 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1459 664 143 99 57 chr11 114641190 114641331 -7202525 + B1_Mur3 SINE Alu 1 147 -2 3 1459 290 315 0 0 chr11 114643760 114643874 -7199982 - MIR SINE MIR -123 145 32 3 1459 374 287 4 8 chr11 114643940 114644212 -7199644 + (TG)n Simple_repeat Simple_repeat 1 270 0 3 1459 539 260 24 0 chr11 114645097 114645220 -7198636 + ID_B1 SINE B4 84 209 -15 3 1459 828 238 48 0 chr11 114645375 114645564 -7198292 + B3A SINE B2 1 198 0 3 1459 1093 154 110 16 chr11 114645783 114645974 -7197882 + B3 SINE B2 1 209 -7 3 1459 192 311 95 46 chr11 114647260 114647483 -7196373 + MIR SINE MIR 3 236 -26 3 1459 198 172 15 45 chr11 114648243 114648310 -7195546 + CT-rich Low_complexity Low_complexity 1 65 0 3 1459 284 244 77 0 chr11 114648434 114648512 -7195344 + PB1D10 SINE Alu 28 111 -6 4 1459 432 0 0 0 chr11 114648515 114648563 -7195293 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 4 1459 210 56 0 77 chr11 114649804 114649843 -7194013 - B1_Mur4 SINE Alu -114 36 1 4 1459 705 169 0 0 chr11 114649895 114650031 -7193825 + CT-rich Low_complexity Low_complexity 2 137 0 4 1459 630 213 118 0 chr11 114650031 114650158 -7193698 - B1_Mur1 SINE Alu -5 144 3 4 1459 287 284 0 13 chr11 114650161 114650236 -7193620 - PB1D10 SINE Alu -43 74 1 4 1459 224 209 0 0 chr11 114651985 114652028 -7191828 + CT-rich Low_complexity Low_complexity 1 43 0 4 1459 22 0 0 0 chr11 114653463 114653485 -7190371 + GC_rich Low_complexity Low_complexity 1 22 0 4 1459 413 241 133 100 chr11 114653864 114654044 -7189812 + B3A SINE B2 10 195 -3 4 1459 215 136 0 43 chr11 114655864 114655910 -7187946 + PB1D10 SINE Alu 52 95 -22 4 1459 227 191 0 0 chr11 114655878 114655920 -7187936 + B1_Mur1 SINE Alu 67 108 -41 4 1459 450 0 0 0 chr11 114655929 114655979 -7187877 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1459 593 226 7 7 chr11 114656148 114656286 -7187570 - ID_B1 SINE B4 0 224 87 4 1459 225 0 0 0 chr11 114656588 114656613 -7187243 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1459 248 298 70 106 chr11 114657613 114657812 -7186044 + LTR81C LTR ERV1? 215 406 -747 4 1459 359 260 11 11 chr11 114658173 114658352 -7185504 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1459 406 255 10 0 chr11 114659916 114660014 -7183842 + ID_B1 SINE B4 118 216 -8 4 1459 1617 26 0 16 chr11 114660341 114660533 -7183323 + B2_Mm1a SINE B2 2 190 -3 4 1459 2606 143 112 8 chr11 114660838 114661147 -7182709 - RMER4B LTR ERVK 0 585 228 4 1459 1475 88 16 0 chr11 114661147 114661339 -7182517 - B2_Mm2 SINE B2 0 195 1 4 1459 2606 143 112 8 chr11 114661339 114661522 -7182334 - RMER4B LTR ERVK -358 227 42 4 1459 550 261 47 28 chr11 114661863 114662181 -7181675 + RMER17C LTR ERVK 1 378 -32 4 1459 698 216 57 13 chr11 114662180 114662339 -7181517 - B3 SINE B2 -50 166 1 4 1459 299 267 50 184 chr11 114662349 114662379 -7181477 - B3A SINE B2 -3 195 170 4 1459 597 76 0 0 chr11 114662379 114662471 -7181385 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 1459 299 267 50 184 chr11 114662471 114662619 -7181237 - B3A SINE B2 -29 169 41 4 1459 189 171 0 0 chr11 114662662 114662697 -7181159 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 4 1459 1844 179 42 42 chr11 114663362 114663746 -7180110 + ORR1C2 LTR MaLR 1 384 0 4 1459 211 218 36 0 chr11 114664637 114664692 -7179164 + CT-rich Low_complexity Low_complexity 3 59 0 4 1459 1018 237 21 28 chr11 114666140 114666465 -7177391 - RMER17C LTR ERVK 0 410 88 4 1459 1118 66 0 0 chr11 114666466 114666602 -7177254 + B1_Mus1 SINE Alu 1 136 -12 4 1459 925 214 21 0 chr11 114666683 114666870 -7176986 + ID_B1 SINE B4 2 192 -32 4 1459 258 157 99 14 chr11 114666896 114666967 -7176889 + B1F1 SINE Alu 72 148 -1 4 1459 224 196 216 0 chr11 114667002 114667053 -7176803 + ID4 SINE ID 20 81 -2 4 1459 389 223 125 0 chr11 114668133 114668245 -7175611 - B1_Mus1 SINE Alu -19 129 4 4 1459 242 0 0 57 chr11 114668329 114668364 -7175492 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1459 282 164 0 0 chr11 114668532 114668587 -7175269 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 4 1459 23 33 0 0 chr11 114669311 114669341 -7174515 + GC_rich Low_complexity Low_complexity 1 30 0 4 1459 2125 137 27 35 chr11 114669804 114670161 -7173695 - RMER10B LTR ERVL 0 398 43 4 1459 3217 50 0 0 chr11 114670161 114670560 -7173296 - MTB LTR MaLR 0 400 2 4 1459 2125 137 27 35 chr11 114670560 114670603 -7173253 - RMER10B LTR ERVL -356 42 1 4 1459 1022 126 60 11 chr11 114670804 114670988 -7172868 - B2_Mm2 SINE B2 -1 194 2 4 1459 255 308 131 0 chr11 114671567 114671674 -7172182 + PB1 SINE Alu 3 123 -4 4 1459 305 294 38 29 chr11 114671799 114671904 -7171952 + B4A SINE B4 126 231 -61 4 1459 452 197 18 57 chr11 114671890 114672012 -7171844 + PB1D9 SINE Alu 5 147 -1 4 1459 480 48 0 0 chr11 114672023 114672086 -7171770 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1459 460 207 198 0 chr11 114672280 114672396 -7171460 + ID_B1 SINE B4 86 224 0 4 1459 505 229 0 0 chr11 114672478 114672574 -7171282 + PB1D10 SINE Alu 1 96 -21 4 1459 855 170 0 13 chr11 114672779 114672928 -7170928 - B1_Mus2 SINE Alu 0 147 1 4 1459 1015 88 6 51 chr11 114672953 114673109 -7170747 - B1_Mur3 SINE Alu 0 149 1 4 1459 868 158 0 0 chr11 114673412 114673551 -7170305 - B1_Mus1 SINE Alu -9 139 1 4 1459 259 320 96 10 chr11 114673625 114673729 -7170127 - MLT1C LTR MaLR -4 463 351 4 1459 424 228 92 110 chr11 114673736 114673963 -7169893 - ID_B1 SINE B4 0 224 2 4 1459 216 0 0 0 chr11 114674336 114674360 -7169496 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1459 180 0 0 0 chr11 114674728 114674748 -7169108 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1459 1101 76 7 0 chr11 114674748 114674893 -7168963 - B1_Mus1 SINE Alu 0 148 3 4 1459 240 351 0 0 chr11 114675166 114675243 -7168613 + B1F SINE Alu 67 143 -6 4 1459 209 159 0 22 chr11 114675243 114675288 -7168568 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 4 1459 1101 82 0 0 chr11 114675355 114675502 -7168354 + B1_Mm SINE Alu 1 147 0 4 1459 496 259 35 56 chr11 114675522 114675665 -7168191 + ID_B1 SINE B4 85 224 0 4 1459 242 288 149 40 chr11 114675537 114675711 -7168145 - YREP_Mm Unknown Unknown -1505 307 115 4 1459 1627 220 27 3 chr11 114675725 114676053 -7167803 + MTD LTR MaLR 19 354 -65 4 1459 582 273 0 40 chr11 114677379 114677528 -7166328 + B1F1 SINE Alu 7 149 0 4 1459 707 288 7 46 chr11 114677529 114677770 -7166086 + B4 SINE B4 1 245 -47 4 1459 239 95 48 0 chr11 114677770 114677812 -7166044 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 4 1459 186 43 0 0 chr11 114677816 114677839 -7166017 + (TGGA)n Simple_repeat Simple_repeat 2 24 0 4 1459 341 222 109 22 chr11 114677863 114677955 -7165901 + RSINE1 SINE B4 2 101 -64 4 1459 393 255 20 46 chr11 114678048 114678200 -7165656 - RSINE1 SINE B4 -15 150 3 4 1459 333 315 0 0 chr11 114678302 114678571 -7165285 + (CA)n Simple_repeat Simple_repeat 1 269 0 4 1459 593 62 0 0 chr11 114678979 114679059 -7164797 - L1Md_F2 LINE L1 -509 6073 5994 4 1459 342 0 0 0 chr11 114680111 114680149 -7163707 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1459 734 289 26 133 chr11 114680152 114680339 -7163517 + MTE2a LTR MaLR 14 163 -216 4 1459 698 127 86 36 chr11 114680339 114680478 -7163378 + B1_Mus2 SINE Alu 1 146 -1 4 1459 734 277 20 177 chr11 114680478 114680739 -7163117 + MTE2a LTR MaLR 164 372 -7 4 1459 183 220 16 63 chr11 114680978 114681041 -7162815 + L3 LINE CR1 4099 4158 -331 4 1459 414 0 0 0 chr11 114682235 114682281 -7161575 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 4 1459 441 37 395 0 chr11 114682283 114682364 -7161492 - B1_Mm SINE Alu -6 141 29 4 1459 984 70 158 0 chr11 114682364 114682522 -7161334 - B2_Mm2 SINE B2 -12 183 1 4 1459 843 244 45 0 chr11 114682875 114683076 -7160780 + B3 SINE B2 1 210 -6 4 1459 455 301 88 7 chr11 114683226 114683373 -7160483 + MLT1E3 LTR MaLR 343 501 -123 4 1459 603 0 0 0 chr11 114683410 114683477 -7160379 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 4 1459 492 233 0 0 chr11 114683479 114683599 -7160257 + CT-rich Low_complexity Low_complexity 2 121 0 4 1459 1127 55 7 7 chr11 114683606 114683754 -7160102 - B1_Mus1 SINE Alu 0 148 1 4 1459 388 251 264 3 chr11 114683754 114683894 -7159962 - B3 SINE B2 -12 186 12 4 1459 309 294 70 47 chr11 114685516 114685687 -7158169 + L1M5 LINE L1 5411 5585 -539 4 1459 4202 20 0 2 chr11 114686015 114686509 -7157347 + MT2_Mm LTR ERVL 1 493 0 4 1459 293 188 48 68 chr11 114686621 114686709 -7157147 + MTD LTR MaLR 283 405 -14 4 1459 435 245 21 0 chr11 114686857 114686951 -7156905 + MLT1A0 LTR MaLR 1 96 -269 4 1459 739 268 5 62 chr11 114686976 114687171 -7156685 + ID_B1 SINE B4 2 185 -39 4 1459 391 288 59 8 chr11 114687176 114687295 -7156561 + RSINE1 SINE B4 36 160 -5 4 1459 207 0 0 0 chr11 114687338 114687361 -7156495 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1459 1214 47 0 0 chr11 114687372 114687520 -7156336 + B1_Mus1 SINE Alu 1 148 0 4 1459 782 229 34 15 chr11 114687564 114687768 -7156088 + B3 SINE B2 3 210 -6 4 182 472 329 57 14 chr11 114687795 114688005 -7155851 + MLT1A0 LTR MaLR 143 361 -4 4 1460 252 0 0 0 chr11 114688336 114688364 -7155492 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1460 387 293 113 67 chr11 114688395 114688633 -7155223 - B4A SINE B4 -18 274 26 4 1460 1306 77 0 21 chr11 114688660 114688846 -7155010 - B2_Mm2 SINE B2 -10 185 4 4 1460 780 111 0 0 chr11 114688952 114689069 -7154787 + (GAA)n Simple_repeat Simple_repeat 1 117 0 4 1460 1134 68 7 0 chr11 114689114 114689261 -7154595 + B1_Mus1 SINE Alu 1 148 0 4 1460 222 317 12 47 chr11 114689283 114689369 -7154487 - B3 SINE B2 -42 174 92 4 1460 290 248 298 9 chr11 114690283 114690397 -7153459 - ID_B1 SINE B4 -42 182 36 4 1460 397 157 247 0 chr11 114690410 114690499 -7153357 - URR1A DNA MER1_type -115 111 1 4 1460 224 150 0 0 chr11 114692243 114692283 -7151573 + B3A SINE B2 1 40 -158 4 1460 802 71 259 14 chr11 114692283 114692426 -7151430 + B2_Mm2 SINE B2 1 178 -17 4 1460 24 0 0 0 chr11 114692426 114692450 -7151406 + AT_rich Low_complexity Low_complexity 1 24 0 4 1460 599 166 0 4 chr11 114692450 114692554 -7151302 + B3 SINE B2 27 126 -90 4 1460 306 0 0 0 chr11 114692590 114692624 -7151232 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1460 245 309 0 31 chr11 114692822 114692840 -7151016 - BC1_Mm scRNA scRNA -35 117 101 5 1460 1288 76 49 0 chr11 114692840 114693024 -7150832 - B2_Mm1t SINE B2 0 193 1 5 1460 308 266 0 38 chr11 114693024 114693109 -7150747 - ID4 SINE ID -52 100 17 5 1460 1033 76 21 0 chr11 114693109 114693253 -7150603 - B1_Mus2 SINE Alu 0 147 1 5 1460 775 158 0 0 chr11 114693388 114693508 -7150348 - B1_Mur1 SINE Alu -9 140 21 5 1460 1156 67 84 6 chr11 114693518 114693684 -7150172 + B2_Mm2 SINE B2 3 181 -14 5 1460 21 57 0 0 chr11 114693712 114693747 -7150109 + AT_rich Low_complexity Low_complexity 1 35 0 5 1460 719 256 0 47 chr11 114693753 114693925 -7149931 - RSINE1 SINE B4 0 165 2 5 1460 247 370 28 0 chr11 114693928 114694036 -7149820 - MIRb SINE MIR -70 198 88 5 1460 516 206 9 9 chr11 114694426 114694534 -7149322 + PB1D10 SINE Alu 5 112 -5 5 1460 541 280 18 18 chr11 114695133 114695300 -7148556 + ID_B1 SINE B4 52 218 -6 5 1460 188 354 0 20 chr11 114695634 114695735 -7148121 - MIRc SINE MIR -5 263 165 5 1460 242 280 0 0 chr11 114696009 114696059 -7147797 + MIRm SINE MIR 105 154 -122 5 1460 3919 94 17 39 chr11 114696059 114696599 -7147257 + MT2B2 LTR ERVL 1 547 -37 5 1460 1396 58 5 20 chr11 114696599 114696794 -7147062 + B2_Mm1a SINE B2 1 192 -1 5 1460 3919 94 17 39 chr11 114696794 114696850 -7147006 + MT2B2 LTR ERVL 548 584 0 5 1460 359 256 0 0 chr11 114697318 114697400 -7146456 + ID SINE ID 2 83 -141 5 1460 741 256 103 0 chr11 114697414 114697609 -7146247 + B3 SINE B2 1 215 -1 5 1460 906 92 0 78 chr11 114697628 114697781 -7146075 - B1_Mus2 SINE Alu 0 147 7 5 1460 576 42 0 0 chr11 114697808 114697879 -7145977 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 5 1460 406 240 19 93 chr11 114697896 114698057 -7145799 + B1_Mur3 SINE Alu 1 149 0 5 1460 1032 90 28 0 chr11 114698082 114698226 -7145630 + B1_Mus1 SINE Alu 1 148 0 5 1460 407 227 11 11 chr11 114698260 114698349 -7145507 + ID_B1 SINE B4 121 209 -15 5 1460 1252 153 13 9 chr11 114698938 114699162 -7144694 - URR1B DNA MER1_type 0 225 1 5 1460 402 292 19 19 chr11 114699185 114699342 -7144514 - RSINE1 SINE B4 -5 160 4 5 1460 339 44 0 0 chr11 114699578 114699623 -7144233 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1460 1213 72 15 12 chr11 114700099 114700511 -7143345 + (TATG)n Simple_repeat Simple_repeat 1 413 0 5 1460 753 200 80 0 chr11 114700524 114700674 -7143182 - B3 SINE B2 -53 163 2 5 1460 1052 65 0 7 chr11 114700698 114700837 -7143019 + B1_Mm SINE Alu 1 138 -9 5 1460 294 29 0 0 chr11 114700837 114700872 -7142984 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1460 744 264 6 33 chr11 114700902 114701100 -7142756 - B3A SINE B2 -1 194 15 5 1460 1185 48 7 0 chr11 114701463 114701610 -7142246 - B1_Mus1 SINE Alu 0 148 1 5 1460 879 151 120 26 chr11 114701610 114701623 -7142233 - ORR1D1 LTR MaLR -165 209 201 5 1460 3128 46 179 2 chr11 114701623 114702058 -7141798 + RLTR1B LTR ERV1 1 512 0 5 1460 879 151 120 26 chr11 114702058 114702235 -7141621 - ORR1D1 LTR MaLR -174 200 1 5 1460 625 228 41 0 chr11 114702367 114702490 -7141366 + RSINE1 SINE B4 3 130 -35 5 1460 825 169 14 0 chr11 114702525 114702667 -7141189 + B1_Mur4 SINE Alu 1 144 -6 5 1460 333 0 0 0 chr11 114702687 114702724 -7141132 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1460 526 274 35 40 chr11 114702747 114702945 -7140911 - B3A SINE B2 -1 197 1 5 1460 744 169 7 56 chr11 114703011 114703155 -7140701 - B1_Mur2 SINE Alu -2 147 11 5 1460 2039 96 45 3 chr11 114703176 114703490 -7140366 - ORR1A2 LTR MaLR 0 327 1 5 1460 283 220 291 71 chr11 114703604 114703731 -7140125 - RSINE1 SINE B4 -8 157 3 5 1460 893 235 9 27 chr11 114704330 114704549 -7139307 - B3 SINE B2 0 216 2 5 1460 243 0 0 0 chr11 114704553 114704580 -7139276 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1460 730 178 15 7 chr11 114704580 114704716 -7139140 - B1_Mur1 SINE Alu -11 138 2 5 1460 486 33 0 0 chr11 114704726 114704786 -7139070 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1460 1167 34 7 0 chr11 114704800 114704946 -7138910 - B1_Mus1 SINE Alu -1 147 1 5 1460 25 31 0 0 chr11 114705118 114705150 -7138706 + AT_rich Low_complexity Low_complexity 1 32 0 5 1460 228 111 0 0 chr11 114705665 114705701 -7138155 + (CCCTG)n Simple_repeat Simple_repeat 5 40 0 5 1460 824 244 9 5 chr11 114705950 114706160 -7137696 + ID_B1 SINE B4 1 211 -13 5 1460 264 30 0 0 chr11 114706161 114706194 -7137662 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1460 200 276 33 33 chr11 114706700 114706760 -7137096 + MIRc SINE MIR 108 167 -101 5 1460 333 320 22 74 chr11 114707303 114707438 -7136418 + ID_B1 SINE B4 79 206 -18 5 1460 1168 36 0 0 chr11 114707503 114707643 -7136213 + B1_Mus1 SINE Alu 1 140 -8 5 1460 210 37 0 0 chr11 114707673 114707700 -7136156 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1460 381 254 61 45 chr11 114708935 114709067 -7134789 - ID_B1 SINE B4 -11 213 80 5 1460 243 197 53 53 chr11 114709440 114709455 -7134401 + ID_B1 SINE B4 137 211 -13 5 1460 470 33 0 0 chr11 114709455 114709515 -7134341 + B1_Mus2 SINE Alu 75 134 -13 5 1460 291 28 0 0 chr11 114709515 114709551 -7134305 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1460 341 235 367 32 chr11 114709660 114709818 -7134038 - B3 SINE B2 -4 212 2 5 1460 207 0 0 0 chr11 114709821 114709844 -7134012 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1460 1086 81 0 0 chr11 114709844 114709992 -7133864 - B1_Mus1 SINE Alu 0 148 1 5 1460 674 162 0 84 chr11 114710023 114710165 -7133691 + B1_Mus2 SINE Alu 1 130 -17 5 1460 346 263 40 28 chr11 114710534 114710666 -7133190 - MIRc SINE MIR -90 178 44 5 1460 195 139 0 0 chr11 114711932 114711968 -7131888 + (C)n Simple_repeat Simple_repeat 1 36 0 5 1460 381 22 0 0 chr11 114714792 114714838 -7129018 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1460 600 206 198 12 chr11 114715509 114715671 -7128185 + B3 SINE B2 25 216 0 5 1460 598 169 114 15 chr11 114715763 114715895 -7127961 - B1_Mur2 SINE Alu -4 145 1 5 1460 1191 175 0 24 chr11 114716755 114716966 -7126890 - B3 SINE B2 -6 210 5 5 1460 22 35 0 0 chr11 114717073 114717102 -7126754 + AT_rich Low_complexity Low_complexity 1 29 0 5 1460 297 0 0 0 chr11 114717126 114717159 -7126697 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1460 473 176 157 0 chr11 114717168 114717276 -7126580 - RSINE1 SINE B4 -38 127 3 5 1460 32 62 0 24 chr11 114717276 114717326 -7126530 + AT_rich Low_complexity Low_complexity 1 50 0 5 1460 683 188 29 22 chr11 114717326 114717462 -7126394 + B1_Mur2 SINE Alu 4 140 -9 5 1460 32 62 0 24 chr11 114717462 114717493 -7126363 + AT_rich Low_complexity Low_complexity 1 30 0 5 1460 481 213 54 23 chr11 114717603 114717733 -7126123 - Lx8 LINE L1 -326 7147 7014 5 1460 1058 76 0 0 chr11 114717733 114717878 -7125978 - B2_Mm2 SINE B2 -49 146 2 5 1460 523 204 348 0 chr11 114717878 114718044 -7125812 - B4A SINE B4 -59 233 7 5 1460 270 197 164 15 chr11 114718045 114718112 -7125744 - ID4 SINE ID -1 82 6 5 1460 239 303 30 15 chr11 114718382 114718449 -7125407 - ID4_ SINE ID -8 75 8 5 1460 696 250 15 40 chr11 114718909 114719109 -7124747 - B3A SINE B2 -3 195 1 5 1460 580 262 32 0 chr11 114719113 114719239 -7124617 - ID_B1 SINE B4 -7 217 88 5 1460 318 259 48 69 chr11 114719115 114719260 -7124596 + YREP_Mm Unknown Unknown 186 327 -1485 5 1460 247 303 15 0 chr11 114719287 114719353 -7124503 + B1F SINE Alu 23 89 -60 5 1460 261 0 0 0 chr11 114719368 114719397 -7124459 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5 1460 743 254 76 8 chr11 114719420 114719622 -7124234 + B3 SINE B2 6 201 -15 5 1460 25 31 0 0 chr11 114719652 114719684 -7124172 + AT_rich Low_complexity Low_complexity 1 32 0 5 1460 240 156 106 30 chr11 114719687 114719753 -7124103 - MTE2b LTR MaLR -7 372 302 5 1460 630 243 40 27 chr11 114719766 114719914 -7123942 - MTE2b LTR MaLR -137 242 93 5 1460 324 269 46 37 chr11 114720015 114720123 -7123733 + B1F SINE Alu 1 109 -11 5 1460 527 195 66 25 chr11 114720262 114720383 -7123473 - B1_Mus1 SINE Alu -22 126 1 5 1460 1156 221 91 16 chr11 114720482 114720573 -7123283 - ORR1D1 LTR MaLR -35 339 244 5 1460 216 0 0 0 chr11 114720573 114720597 -7123259 + (CAGG)n Simple_repeat Simple_repeat 4 27 0 5 1460 1156 221 91 16 chr11 114720597 114720813 -7123043 - ORR1D1 LTR MaLR -131 243 11 5 1460 1575 26 0 20 chr11 114720825 114721020 -7122836 - B2_Mm1a SINE B2 -1 192 2 5 1460 697 154 95 7 chr11 114721495 114721632 -7122224 - B1_Mur3 SINE Alu 0 149 1 5 1460 914 189 92 0 chr11 114721680 114721876 -7121980 - B3 SINE B2 0 216 3 5 1460 335 171 12 137 chr11 114721923 114722022 -7121834 + B1F SINE Alu 20 138 -11 5 1460 216 0 0 0 chr11 114722027 114722051 -7121805 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 5 1460 746 171 133 5 chr11 114722058 114722246 -7121610 + MTD LTR MaLR 208 419 0 5 1460 871 271 66 14 chr11 114722353 114722411 -7121445 - MT2B2 LTR ERVL -2 582 512 5 1460 510 61 0 0 chr11 114722411 114722477 -7121379 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1460 871 271 66 14 chr11 114722477 114722650 -7121206 - MT2B2 LTR ERVL -73 511 336 5 1460 941 119 0 7 chr11 114722650 114722802 -7121054 + (TCC)n Simple_repeat Simple_repeat 3 153 0 5 1460 871 236 43 7 chr11 114722802 114722879 -7120977 - MT2B2 LTR ERVL -249 335 281 5 1460 606 24 0 0 chr11 114722890 114722974 -7120882 - L1Md_T LINE L1 -1 6581 6498 5 1460 1069 89 0 0 chr11 114723007 114723153 -7120703 + B1_Mus2 SINE Alu 2 147 0 5 1460 327 49 0 0 chr11 114723153 114723194 -7120662 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1460 556 152 12 143 chr11 114723198 114723359 -7120497 + Lx4B LINE L1 6916 7055 -3 6 1460 505 198 0 0 chr11 114723372 114723458 -7120398 - MT2B2 LTR ERVL -446 87 2 5 1460 397 269 162 7 chr11 114723650 114723792 -7120064 - B3 SINE B2 0 216 53 6 1460 235 302 122 9 chr11 114723842 114723861 -7119995 - B4A SINE B4 -170 122 4 6 1460 509 193 0 0 chr11 114723861 114723949 -7119907 - B3 SINE B2 -125 91 4 6 1460 761 182 0 65 chr11 114723993 114724146 -7119710 + B1_Mur3 SINE Alu 1 143 -6 6 1460 494 115 435 16 chr11 114724169 114724293 -7119563 + B2_Mm2 SINE B2 1 176 -19 6 1460 966 245 10 0 chr11 114724411 114724619 -7119237 + B3 SINE B2 2 211 -5 6 1460 438 88 0 0 chr11 114725875 114725943 -7117913 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1460 404 240 122 16 chr11 114725970 114726093 -7117763 - B1F1 SINE Alu -13 136 1 6 1460 219 69 0 0 chr11 114726102 114726131 -7117725 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 6 1460 719 141 71 36 chr11 114726131 114726271 -7117585 - B1_Mur4 SINE Alu -1 149 5 6 1460 406 253 0 11 chr11 114726311 114726399 -7117457 - RSINE1 SINE B4 -54 111 25 6 1460 188 204 0 109 chr11 114726587 114726642 -7117214 - L2b LINE L2 -10 3365 3317 6 1460 234 0 0 0 chr11 114727681 114727707 -7116149 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1460 252 0 0 0 chr11 114728081 114728109 -7115747 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1460 480 248 31 16 chr11 114728243 114728370 -7115486 + ID_B1 SINE B4 84 212 -12 6 1460 228 271 0 41 chr11 114728781 114728854 -7115002 + MER5A DNA MER1_type 4 73 -116 6 1460 201 39 0 0 chr11 114729192 114729218 -7114638 + (CCA)n Simple_repeat Simple_repeat 1 26 0 6 1460 405 0 0 0 chr11 114729219 114729264 -7114592 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1460 322 102 61 0 chr11 114731100 114731149 -7112707 - B2_Mm2 SINE B2 -140 55 4 6 1460 330 303 75 50 chr11 114733449 114733609 -7110247 + MT2B LTR ERVL 93 256 -345 6 1460 862 105 60 0 chr11 114733522 114733655 -7110201 + B1_Mus1 SINE Alu 8 148 0 6 1460 285 280 46 99 chr11 114733542 114733673 -7110183 + B4 SINE B4 120 243 -49 6 1460 189 0 0 0 chr11 114733678 114733699 -7110157 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1460 400 189 119 28 chr11 114734104 114734213 -7109643 + PB1D9 SINE Alu 1 119 -1 6 1460 210 236 95 27 chr11 114734976 114735050 -7108806 + MIRc SINE MIR 78 156 -112 6 1460 308 259 124 14 chr11 114736343 114736488 -7107368 - MER20 DNA MER1_type -19 200 40 6 1460 396 0 0 0 chr11 114736887 114736931 -7106925 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1460 288 0 0 0 chr11 114737198 114737230 -7106626 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1460 425 225 0 0 chr11 114737481 114737570 -7106286 - B3A SINE B2 -73 125 37 6 1460 314 236 140 35 chr11 114737662 114737776 -7106080 + B3 SINE B2 2 127 -89 6 1460 534 57 0 0 chr11 114737806 114737876 -7105980 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1460 189 0 0 0 chr11 114738038 114738059 -7105797 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 6 1460 768 246 9 53 chr11 114738059 114738280 -7105576 - ID_B1 SINE B4 -12 212 1 6 1460 230 352 68 54 chr11 114738512 114738659 -7105197 + L2b LINE L2 3225 3373 -2 6 1460 548 284 21 115 chr11 114738907 114739013 -7104843 + B4 SINE B4 1 213 -79 6 1460 804 147 0 0 chr11 114739013 114739142 -7104714 + B1_Mur3 SINE Alu 8 136 -13 6 1460 381 43 0 0 chr11 114739142 114739189 -7104667 + (CAAG)n Simple_repeat Simple_repeat 1 47 0 6 1460 986 258 17 43 chr11 114739190 114739542 -7104314 + RLTR15 LTR ERVK 1 343 -16 6 1460 234 208 0 0 chr11 114739571 114739624 -7104232 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1460 21 0 0 0 chr11 114739656 114739677 -7104179 + AT_rich Low_complexity Low_complexity 1 21 0 6 1460 262 278 17 20 chr11 114739735 114739835 -7104021 - MIRc SINE MIR -119 149 48 6 1460 673 218 14 0 chr11 114739839 114739981 -7103875 + B1_Mur1 SINE Alu 2 145 -4 6 1460 513 0 0 0 chr11 114740396 114740453 -7103403 + (TCC)n Simple_repeat Simple_repeat 2 58 0 6 1460 297 0 0 0 chr11 114740453 114740486 -7103370 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1460 405 0 0 0 chr11 114740486 114740531 -7103325 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1460 694 228 7 0 chr11 114740612 114740748 -7103108 - ID_B1 SINE B4 -4 220 84 6 1460 422 202 91 58 chr11 114740767 114740888 -7102968 - B1F SINE Alu 0 149 25 6 1460 911 128 97 6 chr11 114740920 114741085 -7102771 - B2_Mm2 SINE B2 -14 181 2 6 1460 182 227 0 22 chr11 114741085 114741130 -7102726 - MER5B DNA MER1_type -112 66 23 6 1460 846 172 196 22 chr11 114741324 114741508 -7102348 - B3 SINE B2 0 216 1 6 1460 302 157 0 73 chr11 114742191 114742287 -7101569 + CT-rich Low_complexity Low_complexity 5 93 0 6 1460 363 161 161 0 chr11 114742302 114742389 -7101467 - B1_Mur2 SINE Alu -7 142 42 6 1460 252 157 0 136 chr11 114742336 114742395 -7101461 - 4.5SRNA scRNA scRNA -4 90 40 6 1460 330 167 0 0 chr11 114742395 114742455 -7101401 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 6 1460 219 167 0 23 chr11 114742500 114742543 -7101313 + T-rich Low_complexity Low_complexity 3 44 0 6 1460 653 245 7 0 chr11 114742870 114743017 -7100839 + B1_Mur1 SINE Alu 1 148 -1 6 1460 261 0 0 0 chr11 114743087 114743116 -7100740 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1460 477 0 0 0 chr11 114743412 114743465 -7100391 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1460 441 0 0 0 chr11 114743465 114743513 -7100343 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1460 2474 181 25 71 chr11 114743726 114744244 -7099612 + RLTR18B LTR ERVK 1 494 -18 6 1460 324 0 0 0 chr11 114744244 114744280 -7099576 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1460 243 0 0 0 chr11 114744280 114744306 -7099550 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1460 786 229 13 0 chr11 114744487 114744644 -7099212 + ID_B1 SINE B4 2 160 -64 6 1460 236 242 121 0 chr11 114745016 114745082 -7098774 - PB1D10 SINE Alu -39 78 5 6 1460 822 85 0 0 chr11 114745178 114745307 -7098549 + (CA)n Simple_repeat Simple_repeat 2 130 0 6 1460 367 235 46 56 chr11 114746431 114746539 -7097317 - RMER15 LTR ERVL -47 528 422 6 1460 368 276 0 9 chr11 114747478 114747584 -7096272 - B4A SINE B4 -6 286 182 6 1460 861 177 0 13 chr11 114747811 114748116 -7095740 + CT-rich Low_complexity Low_complexity 1 301 0 6 1460 677 83 118 55 chr11 114748117 114748244 -7095612 - B1_Mur3 SINE Alu -4 145 11 6 1460 339 253 20 69 chr11 114748599 114748701 -7095155 - B4A SINE B4 -195 97 1 6 1460 402 202 0 53 chr11 114748757 114748888 -7094968 - Lx4B LINE L1 -7 7051 6928 6 1460 493 250 16 31 chr11 114748898 114749026 -7094830 - ID_B1 SINE B4 -9 215 90 6 1460 865 251 131 24 chr11 114749300 114749598 -7094258 + MTD LTR MaLR 17 346 -73 6 1460 1308 64 0 0 chr11 114749673 114749844 -7094012 + (TTCTCC)n Simple_repeat Simple_repeat 5 175 0 6 1460 756 203 42 0 chr11 114749857 114750000 -7093856 - B1_Mur2 SINE Alu 0 149 1 6 1460 1331 79 16 0 chr11 114750009 114750199 -7093657 - B2_Mm2 SINE B2 -1 194 2 6 1460 1814 154 61 8 chr11 114750228 114750587 -7093269 + ORR1C1 LTR MaLR 1 378 0 6 1460 269 172 0 15 chr11 114752122 114752187 -7091669 + CT-rich Low_complexity Low_complexity 3 66 0 6 1460 509 89 25 0 chr11 114752246 114752325 -7091531 + (TTTC)n Simple_repeat Simple_repeat 3 83 0 6 1460 561 212 83 0 chr11 114752345 114752477 -7091379 - B1_Mur2 SINE Alu -2 147 5 6 1460 694 250 101 35 chr11 114752496 114752724 -7091132 - Lx8 LINE L1 0 7473 7231 6 1460 678 192 0 31 chr11 114752729 114752858 -7090998 + B1_Mur1 SINE Alu 24 148 -1 6 1460 366 143 0 0 chr11 114752867 114752930 -7090926 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 6 1460 218 365 48 0 chr11 114753220 114753324 -7090532 + B4A SINE B4 48 156 -136 6 1460 487 189 11 0 chr11 114753393 114753483 -7090373 + B2_Mm2 SINE B2 6 96 -99 6 1460 1015 269 60 27 chr11 114753484 114753984 -7089872 - RLTR12B LTR ERVK -8 560 1 6 1460 400 306 8 39 chr11 114753984 114754113 -7089743 + B3 SINE B2 88 212 -4 6 1460 489 219 16 58 chr11 114755468 114755589 -7088267 + PB1D10 SINE Alu 2 117 0 6 1460 293 250 11 0 chr11 114755609 114755701 -7088155 + GA-rich Low_complexity Low_complexity 4 96 0 6 1460 317 324 58 39 chr11 114755706 114755860 -7087996 + HAL1-3A_ME LINE L1 2284 2440 -418 6 1460 270 206 0 0 chr11 114755860 114755923 -7087933 + GA-rich Low_complexity Low_complexity 3 65 0 6 1460 1764 197 10 59 chr11 114756514 114756902 -7086954 - ORR1D1 LTR MaLR -5 369 1 6 1460 284 311 78 0 chr11 114756907 114757010 -7086846 - MIRb SINE MIR -118 150 40 6 1460 450 319 126 56 chr11 114757212 114757624 -7086232 - MER21B LTR ERV1 -281 582 142 6 1460 367 244 67 0 chr11 114757644 114757734 -7086122 + RMER30 DNA MER1_type 8 103 -99 6 1460 318 291 14 215 chr11 114757661 114757884 -7085972 - Charlie12 DNA MER1_type -2689 184 7 6 1460 247 182 0 0 chr11 114757949 114757993 -7085863 + RMER30 DNA MER1_type 8 51 -151 6 1460 431 179 0 9 chr11 114758216 114758323 -7085533 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1460 1103 110 58 6 chr11 114758382 114758556 -7085300 - B2_Mm2 SINE B2 -8 187 5 6 1460 201 74 0 0 chr11 114758566 114758593 -7085263 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1460 636 226 0 45 chr11 114758604 114758738 -7085118 - B1_Mur1 SINE Alu -13 136 9 7 1460 394 317 0 80 chr11 114758738 114758755 -7085101 - ID_B1 SINE B4 -13 211 73 7 1460 320 292 65 9 chr11 114758800 114758907 -7084949 - RSINE1 SINE B4 -51 114 2 7 1460 236 292 65 81 chr11 114758805 114758928 -7084928 - MER121 Unknown Unknown -27 385 265 7 1460 275 240 10 77 chr11 114759724 114759828 -7084028 + PB1D9 SINE Alu 24 120 0 7 1460 851 153 0 45 chr11 114759830 114759987 -7083869 + B1_Mur4 SINE Alu 1 150 0 7 1460 642 178 71 117 chr11 114760054 114760100 -7083756 - B2_Mm2 SINE B2 -6 189 153 7 1460 435 19 0 0 chr11 114760100 114760152 -7083704 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1460 813 172 8 16 chr11 114760152 114760302 -7083554 - B3 SINE B2 -43 152 2 7 1460 503 198 0 59 chr11 114760339 114760457 -7083399 + PB1D10 SINE Alu 6 116 -1 7 1460 745 197 208 0 chr11 114761837 114762015 -7081841 - B3 SINE B2 0 216 2 7 1460 829 119 112 0 chr11 114763071 114763205 -7080651 - B1_Mur3 SINE Alu 0 149 1 7 1460 1236 85 11 0 chr11 114763257 114763433 -7080423 - B2_Mm1a SINE B2 -14 179 2 7 1460 1411 53 11 0 chr11 114763697 114763885 -7079971 - B2_Mm1t SINE B2 -1 192 3 7 1460 944 102 7 0 chr11 114764007 114764144 -7079712 + B1_Mus1 SINE Alu 10 147 -1 7 1460 269 283 0 16 chr11 114764149 114764208 -7079648 - ID_B1 SINE B4 -14 210 153 7 1460 843 105 8 0 chr11 114764208 114764332 -7079524 - ORR1B1 LTR MaLR -2 392 268 7 1460 865 218 3 3 chr11 114764960 114765277 -7078579 + (TCCA)n Simple_repeat Simple_repeat 1 317 0 7 1460 264 246 0 0 chr11 114765486 114765555 -7078301 + (TGGG)n Simple_repeat Simple_repeat 1 69 0 7 1460 371 73 18 0 chr11 114765555 114765610 -7078246 + (TATG)n Simple_repeat Simple_repeat 3 58 0 7 1460 438 223 11 11 chr11 114765674 114765769 -7078087 + B4A SINE B4 2 96 -196 7 1460 497 217 64 40 chr11 114765775 114765900 -7077956 + RSINE1 SINE B4 17 144 -21 7 1460 24 53 0 0 chr11 114765923 114765961 -7077895 + AT_rich Low_complexity Low_complexity 1 38 0 7 1460 2248 115 3 30 chr11 114765961 114766328 -7077528 - RLTR15 LTR ERVK 0 359 3 7 1460 263 310 63 50 chr11 114766334 114766555 -7077301 + B4 SINE B4 78 292 0 7 1460 408 275 152 25 chr11 114766747 114766945 -7076911 - RMER15 LTR ERVL 0 575 353 7 1460 228 184 0 0 chr11 114767313 114767351 -7076505 + U2 snRNA snRNA 2 39 -149 7 1460 598 255 21 7 chr11 114767618 114767760 -7076096 - RSINE1 SINE B4 -19 146 3 7 1460 1200 53 0 0 chr11 114767773 114767925 -7075931 + (TCC)n Simple_repeat Simple_repeat 3 154 0 7 1460 710 158 63 28 chr11 114767925 114768068 -7075788 - B1_Mur3 SINE Alu -1 148 1 7 1460 1488 175 31 7 chr11 114768136 114768424 -7075432 + RMER1B Other Other 758 1052 -14 7 1460 775 178 11 0 chr11 114768480 114768654 -7075202 + GA-rich Low_complexity Low_complexity 3 178 0 7 1460 423 0 0 0 chr11 114768665 114768712 -7075144 + (TAG)n Simple_repeat Simple_repeat 3 49 0 7 1460 270 304 0 0 chr11 114768714 114768794 -7075062 - ID4 SINE ID -2 81 2 7 1460 385 272 0 19 chr11 114768813 114768918 -7074938 - B1F SINE Alu -5 144 42 7 1460 2139 177 38 2 chr11 114769397 114769794 -7074062 + MTD LTR MaLR 1 411 -8 7 1460 310 215 101 0 chr11 114769849 114769928 -7073928 + MLT1D LTR MaLR 8 94 -411 7 1460 465 19 0 0 chr11 114769956 114770010 -7073846 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1460 23 0 0 0 chr11 114770569 114770592 -7073264 + AT_rich Low_complexity Low_complexity 1 23 0 7 1460 243 0 0 0 chr11 114770827 114770854 -7073002 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1460 510 284 77 0 chr11 114770960 114771103 -7072753 + MLT1D LTR MaLR 254 402 -103 7 1460 1792 5 0 0 chr11 114771103 114771314 -7072542 + L1Md_A LINE L1 6372 6582 0 7 1460 510 284 77 0 chr11 114771314 114771364 -7072492 + MLT1D LTR MaLR 403 461 -44 7 1460 1314 194 32 132 chr11 114771368 114771497 -7072359 - L1_Mur2 LINE L1 -1025 4861 4735 7 1460 1502 47 0 10 chr11 114771497 114771691 -7072165 - B2_Mm1t SINE B2 0 193 2 7 1460 1314 194 32 132 chr11 114771691 114771722 -7072134 - L1_Mur1 LINE L1 -1152 4734 4734 7 1460 1081 29 66 0 chr11 114771722 114771858 -7071998 - B1_Mm SINE Alu -2 145 1 7 1460 1340 128 52 21 chr11 114771858 114772106 -7071750 - L1_Mur2 LINE L1 -1139 4738 4484 7 1460 2082 103 88 31 chr11 114772106 114772458 -7071398 + Lx4A LINE L1 6686 7057 -1 7 1460 360 226 220 25 chr11 114772755 114772873 -7070983 + B1F SINE Alu 9 149 0 7 1460 243 167 0 0 chr11 114773450 114773492 -7070364 - ID4 SINE ID -40 43 2 7 1460 31 0 0 0 chr11 114773581 114773612 -7070244 + AT_rich Low_complexity Low_complexity 1 31 0 7 1460 606 118 0 0 chr11 114773764 114773857 -7069999 + (GGGA)n Simple_repeat Simple_repeat 1 93 0 7 1460 2461 65 9 0 chr11 114773912 114774236 -7069620 + ORR1A2 LTR MaLR 1 327 0 7 1460 267 31 0 0 chr11 114774662 114774694 -7069162 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 7 1460 979 225 0 0 chr11 114774697 114774884 -7068972 - ID_B1 SINE B4 -21 203 17 7 1460 318 218 218 0 chr11 114775423 114775510 -7068346 + ID_B1 SINE B4 84 189 -35 7 1460 691 170 43 0 chr11 114775860 114776001 -7067855 + B3 SINE B2 70 216 0 7 1460 458 237 0 76 chr11 114776143 114776248 -7067608 + PB1D7 SINE Alu 14 110 -10 7 1460 218 32 32 0 chr11 114776250 114776281 -7067575 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 7 1460 418 223 83 103 chr11 114776562 114776707 -7067149 + B4 SINE B4 10 151 -141 7 1460 1288 166 9 0 chr11 114777276 114777487 -7066369 + B3 SINE B2 2 214 -2 7 1460 402 115 0 0 chr11 114777808 114777869 -7065987 + (TTCC)n Simple_repeat Simple_repeat 3 63 0 7 1460 1072 232 5 0 chr11 114778828 114779039 -7064817 + B3 SINE B2 1 212 -4 7 1460 342 23 0 0 chr11 114779085 114779128 -7064728 + RLTR10B LTR ERVK 1 43 -249 7 1460 2039 53 0 121 chr11 114779135 114779458 -7064398 + RLTR10B LTR ERVK 9 292 0 7 1460 581 299 93 42 chr11 114779458 114779674 -7064182 + Lx8 LINE L1 6403 6629 -844 7 1460 3664 135 87 33 chr11 114779676 114780319 -7063537 - RLTR33 LTR ERVK 0 678 1 7 1460 547 241 219 6 chr11 114780472 114780655 -7063201 + Lx8 LINE L1 6627 6848 -625 7 1460 480 212 75 15 chr11 114780667 114780801 -7063055 + Lx8 LINE L1 6891 7032 -441 7 1460 963 112 15 16 chr11 114780801 114780986 -7062870 - ORR1A2 LTR MaLR 0 327 143 7 1460 681 180 6 123 chr11 114781113 114781284 -7062572 - ORR1A2 LTR MaLR -195 151 1 7 1460 465 224 0 0 chr11 114781284 114781369 -7062487 + Lx8 LINE L1 7030 7114 -359 7 1460 228 35 0 0 chr11 114781384 114781413 -7062443 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 7 1460 902 229 83 5 chr11 114781530 114781723 -7062133 + ID_B1 SINE B4 8 215 -9 7 1460 543 217 83 83 chr11 114781973 114782189 -7061667 - B3 SINE B2 0 216 1 7 1460 4664 158 22 23 chr11 114782207 114783060 -7060796 - RMER1A Other Other -2 1028 276 7 1460 2904 65 0 57 chr11 114783115 114783522 -7060334 + L1_Mus2 LINE L1 6183 6566 0 7 1460 255 219 88 0 chr11 114783783 114783887 -7059969 + L1MB1 LINE L1 5197 5306 -837 7 1460 670 273 28 42 chr11 114783890 114784104 -7059752 + B3 SINE B2 2 212 -4 7 1460 678 253 102 45 chr11 114784148 114784392 -7059464 + L1MB1 LINE L1 5388 5645 -523 7 1460 1205 220 15 104 chr11 114784398 114784808 -7059048 - MTEa LTR MaLR -5 374 1 7 1460 792 304 70 76 chr11 114784816 114785332 -7058524 + L1MB1 LINE L1 5651 6163 -26 7 1460 2289 91 22 12 chr11 114786984 114787308 -7056548 - ORR1A2 LTR MaLR 0 327 1 7 1460 2361 129 88 3 chr11 114787527 114787915 -7055941 - MTC LTR MaLR 0 421 1 7 1460 28 0 0 0 chr11 114789076 114789104 -7054752 + AT_rich Low_complexity Low_complexity 1 28 0 7 1460 1233 27 7 0 chr11 114789104 114789250 -7054606 - B1_Mm SINE Alu 0 147 1 7 1460 180 111 0 0 chr11 114789385 114789412 -7054444 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 7 1460 513 104 0 0 chr11 114789409 114789486 -7054370 + (TCCC)n Simple_repeat Simple_repeat 2 78 0 7 1460 195 186 0 0 chr11 114789484 114789527 -7054329 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 7 1460 561 337 76 0 chr11 114790257 114790441 -7053415 - MER63A DNA AcHobo -1 209 12 7 1460 1186 233 63 92 chr11 114790470 114790852 -7053004 - MTEa LTR MaLR -8 371 1 7 1460 1012 114 17 0 chr11 114791423 114791598 -7052258 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 7 1460 587 200 40 0 chr11 114791610 114791710 -7052146 - B1F2 SINE Alu -15 134 31 7 1460 336 346 22 22 chr11 114791710 114791746 -7052110 - ID_B1 SINE B4 -15 209 74 7 1460 539 237 71 14 chr11 114791769 114791910 -7051946 + RSINE1 SINE B4 8 156 -9 7 1460 567 236 219 10 chr11 114792082 114792287 -7051569 + MLT1D LTR MaLR 250 497 -8 7 1460 335 266 147 0 chr11 114792476 114792585 -7051271 + MIRb SINE MIR 20 144 -124 7 1460 827 209 0 0 chr11 114793508 114793647 -7050209 + B1F2 SINE Alu 5 143 -6 7 1460 1225 27 0 20 chr11 114793692 114793842 -7050014 + B1_Mus1 SINE Alu 2 148 0 7 1460 185 0 40 0 chr11 114793872 114793897 -7049959 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1460 892 250 0 26 chr11 114793897 114794086 -7049770 + B3 SINE B2 27 210 -6 7 1460 228 67 0 0 chr11 114794706 114794736 -7049120 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 1460 994 238 150 4 chr11 114795996 114796262 -7047594 + ORR1D2 LTR MaLR 39 343 -27 7 1460 3182 213 51 104 chr11 114796265 114797124 -7046732 - RMER1C Other Other -2 1340 527 7 1460 1625 150 79 101 chr11 114797127 114797534 -7046322 + RMER10B LTR ERVL 1 398 0 7 1460 364 302 0 25 chr11 114798207 114798329 -7045527 + RLTR19-int LTR ERVK 1132 1250 -1988 7 1460 1209 48 7 0 chr11 114798340 114798485 -7045371 - B1_Mm SINE Alu 0 147 2 7 1460 1732 231 206 67 chr11 114798634 114799323 -7044533 + RLTR19-int LTR ERVK 2224 3008 -3129 7 1460 212 296 67 58 chr11 114800156 114800260 -7043596 + B4A SINE B4 2 106 -186 7 1460 260 128 25 25 chr11 114800266 114800346 -7043510 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1460 357 262 12 0 chr11 114800386 114800466 -7043390 - ID4 SINE ID 0 83 3 7 1460 543 224 47 16 chr11 114800493 114800620 -7043236 + B3A SINE B2 1 131 -67 8 1460 6761 84 18 30 chr11 114800669 114802406 -7041450 + L1VL2 LINE L1 135 1847 -1768 8 1460 315 292 0 0 chr11 114802531 114802620 -7041236 - PB1D10 SINE Alu -2 115 27 8 1460 23 54 0 0 chr11 114803306 114803343 -7040513 + AT_rich Low_complexity Low_complexity 1 37 0 8 1460 3629 32 2 0 chr11 114803365 114803863 -7039993 - L1Md_F2 LINE L1 -580 6002 5504 8 1460 4182 61 0 0 chr11 114803863 114804373 -7039483 + L1Md_F2 LINE L1 6061 6570 -12 8 1460 230 219 98 0 chr11 114804641 114804723 -7039133 + L1M2 LINE L1 2745 2834 -3309 8 1460 704 264 31 0 chr11 114804902 114805065 -7038791 + B3A SINE B2 1 168 -30 8 1460 216 0 0 0 chr11 114805078 114805102 -7038754 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1460 295 73 18 18 chr11 114805245 114805301 -7038555 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1460 342 293 120 16 chr11 114805310 114805435 -7038421 - RSINE1 SINE B4 -25 140 3 8 1460 1978 108 41 197 chr11 114805534 114806097 -7037759 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1460 459 175 12 12 chr11 114806097 114806178 -7037678 + MTC LTR MaLR 2 82 -339 8 1460 550 177 52 38 chr11 114806182 114806320 -7037536 + PB1D9 SINE Alu 7 149 0 8 1460 1462 200 135 3 chr11 114806362 114806673 -7037183 + MTC LTR MaLR 70 421 0 8 1460 488 268 95 53 chr11 114806743 114806932 -7036924 - B3A SINE B2 0 198 2 8 1460 417 240 135 30 chr11 114807096 114807229 -7036627 + RSINE1 SINE B4 15 161 -4 8 1460 521 207 181 16 chr11 114807390 114807572 -7036284 - B3 SINE B2 -4 212 1 8 1460 576 252 43 0 chr11 114807581 114807696 -7036160 - ID_B1 SINE B4 -9 215 96 8 1460 207 293 0 0 chr11 114807812 114807894 -7035962 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 8 1460 373 267 67 0 chr11 114807901 114808006 -7035850 + B4 SINE B4 9 120 -172 8 1460 210 204 0 58 chr11 114808032 114808084 -7035772 + G-rich Low_complexity Low_complexity 4 52 0 8 1460 469 250 9 18 chr11 114808265 114808375 -7035481 + PB1D10 SINE Alu 3 111 -6 8 1460 401 53 0 18 chr11 114808375 114808432 -7035424 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 8 1460 346 311 44 4 chr11 114808550 114808667 -7035189 + B1_Mur4 SINE Alu 27 148 -2 8 1460 4617 52 9 2 chr11 114808748 114809304 -7034552 - LTRIS2 LTR ERV1 0 564 5 8 1460 2308 141 2 61 chr11 114809511 114809918 -7033938 - RLTR9A2 LTR ERVK 0 383 1 8 1460 338 171 0 28 chr11 114809921 114809993 -7033863 - ETnERV2-int LTR ERVK -6 7400 7331 8 1460 12168 162 11 61 chr11 114810201 114810620 -7033236 - ETnERV2-int LTR ERVK -981 6425 6053 8 1460 1275 105 5 10 chr11 114810620 114810812 -7033044 - B2_Mm1a SINE B2 -2 191 1 8 1460 12168 162 11 61 chr11 114810812 114811138 -7032718 - ETnERV2-int LTR ERVK -1354 6052 5781 8 1460 1158 69 7 0 chr11 114811138 114811283 -7032573 - B1_Mm SINE Alu 0 147 2 8 1460 12168 266 47 61 chr11 114811283 114812813 -7031043 - ETnERV2-int LTR ERVK -1626 5780 4008 8 1460 214 271 42 28 chr11 114812813 114812885 -7030971 + L4 LINE RTE 726 798 -1231 8 1460 12168 266 47 61 chr11 114812885 114816338 -7027518 - ETnERV2-int LTR ERVK -1626 4007 3 8 1460 2341 139 2 68 chr11 114816339 114816749 -7027107 - RLTR9A2 LTR ERVK 0 383 1 8 1460 496 233 173 29 chr11 114816824 114817032 -7026824 + Lx8 LINE L1 6910 7147 -326 8 1460 753 214 50 39 chr11 114817224 114817254 -7026602 - B2_Mm2 SINE B2 -12 183 156 8 1460 198 0 0 0 chr11 114817254 114817276 -7026580 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 8 1460 753 214 50 39 chr11 114817276 114817425 -7026431 - B2_Mm2 SINE B2 -40 155 2 8 1460 21 0 0 0 chr11 114818049 114818070 -7025786 + AT_rich Low_complexity Low_complexity 1 21 0 8 1460 670 214 122 0 chr11 114818085 114818216 -7025640 - B1_Mur2 SINE Alu 0 149 3 8 1460 270 333 0 83 chr11 114818119 114818240 -7025616 - MT2B LTR ERVL -344 257 147 8 1460 710 279 107 56 chr11 114818282 114818343 -7025513 - B4 SINE B4 -4 288 233 8 1460 727 211 7 7 chr11 114818343 114818491 -7025365 - B1_Mur1 SINE Alu 0 149 2 8 1460 710 279 107 56 chr11 114818491 114818699 -7025157 - B4 SINE B4 -60 232 5 8 1461 511 274 40 20 chr11 114819492 114819641 -7024215 + ID_B1 SINE B4 68 219 -5 8 1461 949 139 6 6 chr11 114819660 114819834 -7024022 + GA-rich Low_complexity Low_complexity 1 174 0 8 1461 520 250 75 0 chr11 114820465 114820585 -7023271 + RSINE1 SINE B4 2 130 -35 8 1461 793 229 78 5 chr11 114822345 114822551 -7021305 - ID_B1 SINE B4 -2 222 2 8 1461 363 321 82 0 chr11 114822551 114822685 -7021171 - B1F SINE Alu -3 146 2 8 1461 985 183 43 24 chr11 114823260 114823467 -7020389 - ORR1C2 LTR MaLR 0 384 174 8 1461 539 62 20 20 chr11 114823470 114823569 -7020287 + (GA)n Simple_repeat Simple_repeat 1 99 0 8 1461 752 189 5 143 chr11 114823591 114823807 -7020049 - ORR1C2 LTR MaLR -198 186 1 8 1461 263 345 45 21 chr11 114823893 114824136 -7019720 + ERVL-E-int LTR ERVL 1505 1753 -3914 8 1461 619 208 73 61 chr11 114824787 114824951 -7018905 + ETnERV3-int LTR ERVK 5614 5779 -29 8 1461 2624 226 78 45 chr11 114824959 114825395 -7018461 + RLTR13D1 LTR ERVK 1 457 -349 8 1461 3373 33 10 0 chr11 114825395 114825787 -7018069 - MTA_Mm LTR MaLR 0 396 1 8 1461 2624 226 78 45 chr11 114825787 114826130 -7017726 + RLTR13D1 LTR ERVK 458 805 -1 8 1461 262 258 46 35 chr11 114826228 114826401 -7017455 + (TATG)n Simple_repeat Simple_repeat 4 178 0 8 1461 387 0 0 0 chr11 114826711 114826754 -7017102 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1461 279 0 0 0 chr11 114827031 114827062 -7016794 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1461 26 0 0 0 chr11 114827467 114827493 -7016363 + AT_rich Low_complexity Low_complexity 1 26 0 8 1461 298 251 133 0 chr11 114827501 114827591 -7016265 - PB1D10 SINE Alu -25 102 1 8 1461 481 314 13 60 chr11 114827601 114827750 -7016106 - B1F1 SINE Alu -7 142 1 8 1461 807 205 149 29 chr11 114827780 114828021 -7015835 + B4 SINE B4 1 270 -22 8 1461 210 118 0 0 chr11 114828107 114828141 -7015715 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1461 471 237 0 0 chr11 114828194 114828371 -7015485 + (CA)n Simple_repeat Simple_repeat 1 177 0 8 1461 516 222 0 0 chr11 114828424 114828604 -7015252 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1461 235 261 0 25 chr11 114828581 114828738 -7015118 + (CATA)n Simple_repeat Simple_repeat 4 156 0 8 1461 423 222 0 0 chr11 114828838 114828991 -7014865 + (CA)n Simple_repeat Simple_repeat 1 153 0 8 1461 233 208 14 0 chr11 114829271 114829343 -7014513 + CT-rich Low_complexity Low_complexity 2 74 0 8 1461 315 309 21 0 chr11 114829351 114829445 -7014411 - B1F2 SINE Alu -26 123 28 8 1461 2053 56 0 93 chr11 114830502 114830815 -7013041 - RLTR10B LTR ERVK 0 292 9 8 1461 308 71 0 0 chr11 114830837 114830879 -7012977 - RLTR10B LTR ERVK -250 42 1 8 1461 741 271 50 46 chr11 114830881 114831121 -7012735 + MTEa LTR MaLR 131 371 -8 8 1461 826 184 7 0 chr11 114831162 114831298 -7012558 + B1_Mur3 SINE Alu 13 149 0 8 1461 1185 210 126 24 chr11 114831419 114831799 -7012057 + MTD LTR MaLR 1 419 0 8 1461 1230 304 79 61 chr11 114832069 114832778 -7011078 + RMER13A LTR ERVK 14 776 -132 8 1461 765 177 0 23 chr11 114832904 114833037 -7010819 - B1_Mur2 SINE Alu -19 130 1 8 1461 259 289 188 36 chr11 114833145 114833310 -7010546 + L2c LINE L2 3229 3418 -8 8 1461 812 229 61 5 chr11 114833447 114833645 -7010211 + B3 SINE B2 1 209 -7 8 1461 307 300 0 0 chr11 114833665 114833735 -7010121 + B3A SINE B2 27 96 -102 8 1461 618 283 66 0 chr11 114833877 114834075 -7009781 + B3 SINE B2 1 211 -5 8 1461 2773 110 31 83 chr11 114834157 114834672 -7009184 + RLTR44C LTR ERVK 4 491 -11 8 1461 1487 122 15 30 chr11 114834676 114834939 -7008917 + IAPEy-int LTR ERVK 1 259 -2553 8 1461 1785 171 109 67 chr11 114834967 114835463 -7008393 + IAPEy-int LTR ERVK 816 1332 -1480 8 1461 2223 121 38 6 chr11 114835557 114835899 -7007957 + IAPEY2_LTR LTR ERVK 5 357 0 8 1461 2520 132 0 107 chr11 114835899 114836383 -7007473 + IAPEy-int LTR ERVK 1 432 -7081 8 1461 1973 148 14 34 chr11 114836804 114837261 -7006595 + IAPEy-int LTR ERVK 433 952 -6629 8 1461 1444 169 105 47 chr11 114837373 114837715 -7006141 + RMER16-int LTR ERVK 251 612 -4794 8 1461 335 239 154 47 chr11 114837709 114837858 -7005998 + RMER16-int LTR ERVK 524 688 -5449 8 1461 492 204 88 0 chr11 114837845 114837958 -7005898 + RMER16-int LTR ERVK 938 1060 -5077 8 1461 268 279 0 60 chr11 114837978 114838062 -7005794 + IAPEy-int LTR ERVK 2461 2539 -4867 8 1461 668 195 0 0 chr11 114838075 114838193 -7005663 + IAPEy-int LTR ERVK 2636 2753 -4653 8 1461 436 103 0 0 chr11 114838219 114838277 -7005579 + IAPEy-int LTR ERVK 3567 3624 -3782 8 1461 625 78 46 64 chr11 114838274 114838383 -7005473 + IAPEy-int LTR ERVK 4567 4673 -2908 8 1461 3236 106 0 24 chr11 114838635 114839089 -7004767 + IAPEy-int LTR ERVK 5203 5645 -1936 8 1461 3413 85 11 7 chr11 114839077 114839529 -7004327 + IAPEy-int LTR ERVK 5761 6214 -1367 8 1461 5615 95 12 8 chr11 114839519 114840295 -7003561 + IAPEy-int LTR ERVK 6735 7513 0 8 1461 2325 118 14 36 chr11 114840295 114840657 -7003199 + RLTR44C LTR ERVK 1 354 -3 8 1461 555 281 35 66 chr11 114840663 114840922 -7002934 + IAPEz-int LTR ERVK 3433 3683 -2798 8 1461 4870 49 0 0 chr11 114840933 114841502 -7002354 + RLTR44-int LTR ERVK 2244 2812 0 8 1461 2838 119 47 8 chr11 114841502 114841975 -7001881 + RLTR44C LTR ERVK 1 491 -11 8 1461 399 288 26 51 chr11 114842249 114842366 -7001490 + RSINE1 SINE B4 44 157 -8 8 1461 246 143 0 0 chr11 114842391 114842440 -7001416 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1461 477 0 0 0 chr11 114843472 114843525 -7000331 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1461 25 51 0 0 chr11 114843591 114843630 -7000226 + AT_rich Low_complexity Low_complexity 1 39 0 8 1461 239 196 18 18 chr11 114843705 114843762 -7000094 + CT-rich Low_complexity Low_complexity 3 59 0 8 1461 815 138 115 0 chr11 114843791 114843921 -6999935 - B1_Mus1 SINE Alu -2 146 2 8 1461 378 0 0 0 chr11 114843959 114844001 -6999855 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1461 246 200 48 48 chr11 114844721 114844784 -6999072 + MLT2D LTR ERVL 1 63 -351 8 1461 776 299 37 54 chr11 114845067 114845149 -6998707 + B4 SINE B4 3 84 -208 8 1461 189 0 0 0 chr11 114845149 114845170 -6998686 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1461 776 299 37 54 chr11 114845170 114845381 -6998475 + B4 SINE B4 85 291 -1 8 1461 209 57 29 0 chr11 114845383 114845418 -6998438 + (CAGAGA)n Simple_repeat Simple_repeat 1 36 0 8 1461 203 152 22 0 chr11 114847659 114847705 -6996151 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 8 1461 852 162 21 14 chr11 114847713 114847857 -6995999 - B1_Mus2 SINE Alu -1 146 2 8 1461 838 240 44 0 chr11 114848014 114848218 -6995638 - B3 SINE B2 -3 213 1 8 1461 259 274 36 0 chr11 114848220 114848304 -6995552 - L1MEc LINE L1 -6277 123 37 8 1461 242 261 15 44 chr11 114848351 114848419 -6995437 + B4 SINE B4 7 72 -220 8 1461 313 270 0 0 chr11 114848360 114848423 -6995433 + BC1_Mm scRNA scRNA 13 75 -77 8 1461 922 129 0 0 chr11 114849546 114849685 -6994171 + B2_Mm2 SINE B2 5 143 -52 8 1461 462 36 0 0 chr11 114849720 114849776 -6994080 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 8 1461 303 308 178 11 chr11 114849776 114849950 -6993906 + L1M2 LINE L1 5040 5242 -901 8 1461 529 239 129 0 chr11 114849954 114850117 -6993739 + B4A SINE B4 80 263 -29 8 1461 209 306 0 14 chr11 114850153 114850226 -6993630 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1461 383 281 120 68 chr11 114850243 114850552 -6993304 + L1MA6 LINE L1 5938 6262 -38 8 1461 506 220 0 0 chr11 114850566 114850657 -6993199 - B1_Mur2 SINE Alu -57 92 2 8 1461 243 289 37 110 chr11 114850573 114850682 -6993174 - MT2B LTR ERVL -361 240 140 8 1461 340 250 31 0 chr11 114850692 114850788 -6993068 + ID_B1 SINE B4 72 170 -54 8 1461 22 0 0 0 chr11 114850889 114850911 -6992945 + AT_rich Low_complexity Low_complexity 1 22 0 8 1461 286 356 40 0 chr11 114851743 114851844 -6992012 - PB1D10 SINE Alu -8 109 5 9 1461 339 253 62 21 chr11 114851921 114852018 -6991838 - PB1D10 SINE Alu 0 120 20 9 1461 261 278 17 0 chr11 114852106 114852279 -6991577 + (CA)n Simple_repeat Simple_repeat 2 177 0 9 1461 499 184 36 11 chr11 114852297 114852579 -6991277 + (CA)n Simple_repeat Simple_repeat 1 289 0 9 1461 298 273 26 0 chr11 114852625 114852702 -6991154 - ID4 SINE ID 0 83 5 9 1461 620 259 24 68 chr11 114852868 114853075 -6990781 + B3A SINE B2 1 198 0 9 1461 466 309 94 0 chr11 114853229 114853378 -6990478 - RSINE1 SINE B4 0 165 3 9 1461 2262 109 12 0 chr11 114853447 114853769 -6990087 + ORR1A2 LTR MaLR 1 326 -1 9 1461 414 200 14 11 chr11 114853798 114853887 -6989969 + MTC LTR MaLR 3 93 -314 9 1461 564 162 37 28 chr11 114853888 114853996 -6989860 + PB1D9 SINE Alu 12 120 0 9 1461 273 320 40 24 chr11 114853996 114854013 -6989843 + B4 SINE B4 97 223 -69 9 1461 1364 223 89 3 chr11 114854019 114854343 -6989513 + MTC LTR MaLR 70 421 0 9 1461 487 226 110 28 chr11 114854405 114854435 -6989421 - B3A SINE B2 0 198 168 9 1461 207 0 0 0 chr11 114854435 114854458 -6989398 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 9 1461 487 226 110 28 chr11 114854458 114854609 -6989247 - B3A SINE B2 -31 167 2 9 1461 269 299 33 33 chr11 114854779 114854869 -6988987 + RSINE1 SINE B4 15 104 -61 9 1461 420 20 0 0 chr11 114854896 114854945 -6988911 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1461 506 204 190 17 chr11 114855121 114855300 -6988556 - B3 SINE B2 -6 210 1 9 1461 605 226 43 0 chr11 114855309 114855424 -6988432 - ID_B1 SINE B4 -9 215 96 9 1461 392 270 63 0 chr11 114855619 114855730 -6988126 + B4 SINE B4 3 120 -172 9 1461 7178 62 10 0 chr11 114855895 114856779 -6987077 + RLTR13B1 LTR ERVK 1 893 0 9 1461 225 264 79 70 chr11 114856845 114856879 -6986977 + MT2B LTR ERVL 127 161 -440 9 1461 483 231 9 27 chr11 114856879 114856990 -6986866 + PB1D10 SINE Alu 3 111 -6 9 1461 665 55 0 11 chr11 114856990 114857081 -6986775 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 9 1461 389 288 44 0 chr11 114857199 114857317 -6986539 + B1_Mur2 SINE Alu 25 147 -2 9 1461 512 232 291 11 chr11 114857570 114857842 -6986014 + Lx8 LINE L1 6768 7115 -358 9 1461 835 189 34 45 chr11 114857850 114858027 -6985829 - B2_Mm2 SINE B2 -16 179 5 9 1461 297 0 0 0 chr11 114858653 114858686 -6985170 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 9 1461 465 210 0 12 chr11 114858689 114858771 -6985085 - B1_Mur2 SINE Alu -25 124 44 9 1461 764 276 57 53 chr11 114858846 114858906 -6984950 - B4 SINE B4 -4 288 233 9 1461 766 206 7 7 chr11 114858906 114859053 -6984803 - B1_Mur1 SINE Alu -1 148 2 9 1461 764 276 57 53 chr11 114859053 114859275 -6984581 - B4 SINE B4 -60 232 5 9 1461 414 268 35 18 chr11 114860206 114860320 -6983536 + ID_B1 SINE B4 100 215 -9 9 1461 237 132 0 0 chr11 114860336 114860374 -6983482 + (GGA)n Simple_repeat Simple_repeat 2 39 0 9 1461 1407 46 0 0 chr11 114860380 114860555 -6983301 + (GGAGAA)n Simple_repeat Simple_repeat 1 175 0 9 1461 571 239 6 11 chr11 114861064 114861242 -6982614 + CT-rich Low_complexity Low_complexity 2 178 0 9 1461 516 228 16 58 chr11 114861271 114861392 -6982464 - PB1D10 SINE Alu 0 117 2 9 1461 329 149 15 0 chr11 114862665 114862732 -6981124 + CT-rich Low_complexity Low_complexity 1 68 0 9 1461 707 212 152 11 chr11 114863477 114863668 -6980188 - ID_B1 SINE B4 -5 219 2 9 1461 371 267 73 7 chr11 114863668 114863804 -6980052 - B1F SINE Alu -3 146 2 9 1461 1262 201 35 134 chr11 114864368 114864794 -6979062 - ORR1C2 LTR MaLR 0 384 1 9 1461 913 252 35 58 chr11 114865790 114866047 -6977809 + MTEa LTR MaLR 129 379 0 9 1461 318 237 86 109 chr11 114866056 114866184 -6977672 + MT2B LTR ERVL 154 278 -323 9 1461 800 197 0 21 chr11 114866074 114866214 -6977642 + B1_Mur4 SINE Alu 14 150 0 9 1461 1029 239 121 21 chr11 114866324 114866705 -6977151 + MTD LTR MaLR 1 419 0 9 1461 1066 300 111 90 chr11 114867037 114867133 -6976723 + RMER13A LTR ERVK 95 172 -688 9 1461 1071 103 0 0 chr11 114867133 114867279 -6976577 + B1_Mus1 SINE Alu 2 147 -1 9 1461 1066 300 111 90 chr11 114867279 114867893 -6975963 + RMER13A LTR ERVK 173 820 -40 9 1461 680 189 16 8 chr11 114867961 114868089 -6975767 - B1_Mur1 SINE Alu -20 129 1 9 1461 476 266 7 61 chr11 114868089 114868109 -6975747 - ID_B1 SINE B4 -20 204 65 9 1461 334 313 82 0 chr11 114868230 114868364 -6975492 + L2c LINE L2 3235 3379 -8 9 1461 873 257 28 14 chr11 114868499 114868712 -6975144 + B3 SINE B2 1 216 0 9 1461 337 271 0 0 chr11 114868725 114868795 -6975061 + B3A SINE B2 27 96 -102 9 1461 342 67 0 0 chr11 114868877 114868922 -6974934 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 9 1461 624 276 73 0 chr11 114868944 114869136 -6974720 + B3 SINE B2 1 206 -10 9 1461 344 315 77 23 chr11 114869457 114869587 -6974269 + RSINE1 SINE B4 7 143 -22 9 1461 288 111 0 0 chr11 114869594 114869639 -6974217 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1461 385 93 40 0 chr11 114869809 114869884 -6973972 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 9 1461 521 132 277 42 chr11 114869884 114870003 -6973853 - B1_Mus1 SINE Alu 0 148 2 9 1461 270 0 0 0 chr11 114870039 114870069 -6973787 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1461 229 325 169 0 chr11 114870071 114870154 -6973702 - Lx8 LINE L1 -146 7327 7231 9 1461 591 264 169 33 chr11 114871150 114871231 -6972625 + B4 SINE B4 5 79 -213 9 1461 189 0 0 0 chr11 114871231 114871252 -6972604 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1461 591 264 169 33 chr11 114871252 114871413 -6972443 + B4 SINE B4 80 280 -12 9 1461 197 100 0 48 chr11 114871437 114871479 -6972377 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 9 1461 838 114 30 12 chr11 114871479 114871648 -6972208 + GA-rich Low_complexity Low_complexity 1 172 0 9 1461 249 33 0 0 chr11 114874077 114874107 -6969749 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 9 1461 672 216 73 15 chr11 114874107 114874235 -6969621 - B1_Mus2 SINE Alu -9 138 2 9 1461 23 0 0 0 chr11 114874374 114874397 -6969459 + AT_rich Low_complexity Low_complexity 1 23 0 9 1461 875 211 44 20 chr11 114874401 114874604 -6969252 - B3 SINE B2 -8 208 1 9 1461 297 218 12 82 chr11 114874605 114874690 -6969166 - L1MEc LINE L1 -6285 115 37 9 1461 269 246 15 44 chr11 114874737 114874805 -6969051 + B4 SINE B4 7 72 -220 9 1461 324 270 0 0 chr11 114874746 114874809 -6969047 + BC1_Mm scRNA scRNA 13 75 -77 9 1461 735 265 70 18 chr11 114875462 114875735 -6968121 + L1MA5 LINE L1 5349 5635 -665 9 1461 1424 252 106 37 chr11 114875748 114876127 -6967729 + MTD LTR MaLR 1 405 -14 9 1461 539 317 96 4 chr11 114876156 114876416 -6967440 + L1MA5 LINE L1 5667 5950 -350 9 1461 855 245 91 8 chr11 114876425 114876668 -6967188 + B4A SINE B4 1 263 -29 9 1461 338 261 11 0 chr11 114877058 114877150 -6966706 + ID_B1 SINE B4 78 170 -54 9 1461 186 43 0 0 chr11 114878094 114878117 -6965739 + (GA)n Simple_repeat Simple_repeat 1 23 0 9 1461 353 283 61 0 chr11 114878129 114878228 -6965628 - PB1D10 SINE Alu -12 105 1 9 1461 659 300 0 0 chr11 114878228 114878309 -6965547 - ID SINE ID -143 81 1 9 1461 315 0 0 0 chr11 114878425 114878460 -6965396 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1461 517 307 0 0 chr11 114878468 114878595 -6965261 + MTEa LTR MaLR 1 127 -252 9 1461 376 169 0 27 chr11 114878606 114878679 -6965177 + B3 SINE B2 144 214 -2 9 1461 1956 103 31 25 chr11 114878702 114879022 -6964834 - RLTRETN_Mm LTR ERVK 0 322 1 9 1461 315 237 0 0 chr11 114879026 114879085 -6964771 + B3A SINE B2 38 96 -102 9 1461 426 85 0 0 chr11 114879168 114879227 -6964629 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 9 1461 638 294 62 0 chr11 114879249 114879443 -6964413 + B3 SINE B2 1 206 -10 9 1461 295 309 111 24 chr11 114879764 114879890 -6963966 + RSINE1 SINE B4 7 143 -22 9 1461 507 60 0 0 chr11 114879896 114879963 -6963893 + (TG)n Simple_repeat Simple_repeat 1 67 0 9 1461 1265 24 24 0 chr11 114880131 114880300 -6963556 + (TTCC)n Simple_repeat Simple_repeat 1 173 0 9 1461 535 123 277 42 chr11 114880346 114880465 -6963391 - B1_Mus1 SINE Alu 0 148 2 9 1461 414 0 0 0 chr11 114880501 114880547 -6963309 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1461 394 260 165 151 chr11 114881624 114881896 -6961960 + B4 SINE B4 5 280 -12 9 1461 589 154 8 16 chr11 114881912 114882037 -6961819 + GA-rich Low_complexity Low_complexity 3 126 0 9 1461 270 0 0 0 chr11 114884287 114884317 -6959539 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 9 1461 690 209 73 15 chr11 114884317 114884445 -6959411 - B1_Mus2 SINE Alu -9 138 2 9 1461 3482 35 2 128 chr11 114884454 114884953 -6958903 + RLTR10C LTR ERVK 1 436 0 9 1461 847 222 46 15 chr11 114885114 114885311 -6958545 - B3 SINE B2 -13 203 1 9 1461 278 231 12 82 chr11 114885312 114885397 -6958459 - L1MEc LINE L1 -6285 115 37 9 1461 347 275 0 0 chr11 114885447 114885516 -6958340 + BC1_Mm scRNA scRNA 7 75 -77 9 1461 743 265 70 18 chr11 114886167 114886440 -6957416 + L1MA5 LINE L1 5349 5635 -665 9 1461 1420 252 106 37 chr11 114886453 114886832 -6957024 + MTD LTR MaLR 1 405 -14 9 1461 539 317 96 4 chr11 114886861 114887121 -6956735 + L1MA5 LINE L1 5667 5950 -350 9 1461 855 245 91 8 chr11 114887130 114887373 -6956483 + B4A SINE B4 1 263 -29 9 1461 338 261 11 0 chr11 114887763 114887855 -6956001 + ID_B1 SINE B4 78 170 -54 9 1461 186 43 0 0 chr11 114888799 114888822 -6955034 + (GA)n Simple_repeat Simple_repeat 1 23 0 9 1461 357 283 61 0 chr11 114888834 114888933 -6954923 - PB1D10 SINE Alu -12 105 1 9 1461 664 300 0 0 chr11 114888933 114889014 -6954842 - ID SINE ID -143 81 1 1 1461 333 0 0 0 chr11 114889130 114889167 -6954689 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1461 519 307 0 0 chr11 114889175 114889302 -6954554 + MTEa LTR MaLR 1 127 -252 1 1461 376 169 0 27 chr11 114889313 114889386 -6954470 + B3 SINE B2 144 214 -2 1 1461 1981 103 31 25 chr11 114889409 114889729 -6954127 - RLTRETN_Mm LTR ERVK 0 322 1 1 1461 320 237 0 0 chr11 114889733 114889792 -6954064 + B3A SINE B2 38 96 -102 1 1461 501 62 0 0 chr11 114889875 114889940 -6953916 + (ATGGTG)n Simple_repeat Simple_repeat 4 68 0 1 1461 678 294 62 0 chr11 114889962 114890156 -6953700 + B3 SINE B2 1 206 -10 1 1461 297 309 111 24 chr11 114890477 114890603 -6953253 + RSINE1 SINE B4 7 143 -22 1 1461 849 38 0 0 chr11 114890609 114890714 -6953142 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 1461 1229 24 24 0 chr11 114890882 114891047 -6952809 + (TTCC)n Simple_repeat Simple_repeat 1 169 0 1 1461 524 123 277 42 chr11 114891093 114891212 -6952644 - B1_Mus1 SINE Alu 0 148 2 1 1461 396 0 0 0 chr11 114891248 114891292 -6952564 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1461 431 264 151 136 chr11 114892371 114892643 -6951213 + B4 SINE B4 5 280 -12 1 1461 778 104 15 15 chr11 114892659 114892795 -6951061 + (GGGAGA)n Simple_repeat Simple_repeat 3 138 0 1 1461 270 0 0 0 chr11 114895045 114895075 -6948781 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 1 1461 692 209 73 15 chr11 114895075 114895203 -6948653 - B1_Mus2 SINE Alu -9 138 2 1 1461 3496 35 2 128 chr11 114895212 114895711 -6948145 + RLTR10C LTR ERVK 1 436 0 1 1461 877 222 46 15 chr11 114895872 114896069 -6947787 - B3 SINE B2 -13 203 1 1 1461 258 231 12 82 chr11 114896070 114896155 -6947701 - L1MEc LINE L1 -6285 115 37 1 1461 348 275 0 0 chr11 114896205 114896274 -6947582 + BC1_Mm scRNA scRNA 7 75 -77 1 1461 693 265 70 18 chr11 114896924 114897197 -6946659 + L1MA5 LINE L1 5349 5635 -665 1 1461 1420 252 106 37 chr11 114897210 114897589 -6946267 + MTD LTR MaLR 1 405 -14 1 1461 512 317 96 4 chr11 114897618 114897878 -6945978 + L1MA5 LINE L1 5667 5950 -350 1 1461 869 245 91 8 chr11 114897887 114898130 -6945726 + B4A SINE B4 1 263 -29 1 1461 348 261 11 0 chr11 114898520 114898612 -6945244 + ID_B1 SINE B4 78 170 -54 1 1461 186 43 0 0 chr11 114899556 114899579 -6944277 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1461 357 283 61 0 chr11 114899591 114899690 -6944166 - PB1D10 SINE Alu -12 105 1 1 1461 664 300 0 0 chr11 114899690 114899771 -6944085 - ID SINE ID -143 81 1 1 1461 333 0 0 0 chr11 114899887 114899924 -6943932 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1461 519 307 0 0 chr11 114899932 114900059 -6943797 + MTEa LTR MaLR 1 127 -252 1 1461 376 169 0 27 chr11 114900070 114900143 -6943713 + B3 SINE B2 144 214 -2 1 1461 1981 103 31 25 chr11 114900166 114900486 -6943370 - RLTRETN_Mm LTR ERVK 0 322 1 1 1461 320 237 0 0 chr11 114900490 114900549 -6943307 + B3A SINE B2 38 96 -102 1 1461 447 68 0 0 chr11 114900632 114900691 -6943165 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 1 1461 678 294 62 0 chr11 114900713 114900907 -6942949 + B3 SINE B2 1 206 -10 1 1461 297 309 111 24 chr11 114901228 114901354 -6942502 + RSINE1 SINE B4 7 143 -22 1 1461 507 60 0 0 chr11 114901360 114901427 -6942429 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1461 1265 24 24 0 chr11 114901595 114901764 -6942092 + (TTCC)n Simple_repeat Simple_repeat 1 173 0 1 1461 524 123 277 42 chr11 114901810 114901929 -6941927 - B1_Mus1 SINE Alu 0 148 2 1 1461 378 0 0 0 chr11 114901965 114902007 -6941849 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1461 431 264 151 136 chr11 114903084 114903356 -6940500 + B4 SINE B4 5 280 -12 1 1461 402 162 0 0 chr11 114903370 114903444 -6940412 + GA-rich Low_complexity Low_complexity 1 74 0 1 1461 270 0 0 0 chr11 114905690 114905720 -6938136 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 1 1461 692 209 73 15 chr11 114905720 114905848 -6938008 - B1_Mus2 SINE Alu -9 138 2 1 1461 3496 35 2 128 chr11 114905857 114906356 -6937500 + RLTR10C LTR ERVK 1 436 0 1 1461 877 222 46 15 chr11 114906517 114906714 -6937142 - B3 SINE B2 -13 203 1 1 1461 258 231 12 82 chr11 114906715 114906800 -6937056 - L1MEc LINE L1 -6285 115 37 1 1461 348 275 0 0 chr11 114906850 114906919 -6936937 + BC1_Mm scRNA scRNA 7 75 -77 1 1461 671 269 70 18 chr11 114907570 114907843 -6936013 + L1MA5A LINE L1 5349 5635 -665 1 1461 1432 249 106 37 chr11 114907856 114908235 -6935621 + MTD LTR MaLR 1 405 -14 1 1461 449 315 135 4 chr11 114908264 114908516 -6935340 + L1MA5A LINE L1 5667 5951 -346 1 1461 722 259 132 8 chr11 114908525 114908759 -6935097 + B4A SINE B4 1 263 -29 1 1461 401 258 0 0 chr11 114909159 114909252 -6934604 + ID_B1 SINE B4 78 170 -54 1 1461 234 250 48 48 chr11 114909179 114909263 -6934593 + PB1 SINE Alu 17 100 -27 1 1461 182 250 0 59 chr11 114909732 114909800 -6934056 + L3 LINE CR1 703 766 -3723 1 1461 341 293 61 0 chr11 114910227 114910326 -6933530 - PB1D10 SINE Alu -12 105 1 1 1461 647 306 0 0 chr11 114910326 114910407 -6933449 - ID SINE ID -143 81 1 1 1461 231 218 0 0 chr11 114910523 114910578 -6933278 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1461 524 316 61 47 chr11 114910586 114910799 -6933057 + MTEa LTR MaLR 1 218 -161 1 1461 320 339 108 26 chr11 114911267 114911461 -6932395 + L1MC LINE L1 4833 5042 -1104 1 1461 376 250 31 136 chr11 114911461 114911599 -6932257 + B4A SINE B4 148 270 -22 1 1461 459 35 0 0 chr11 114911599 114911656 -6932200 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1461 376 250 31 136 chr11 114911656 114911679 -6932177 + B4A SINE B4 271 292 0 1 1461 308 175 16 16 chr11 114911691 114911755 -6932101 + HAL1-3A_ME LINE L1 1968 2031 -827 1 1461 804 291 64 19 chr11 114911886 114912152 -6931704 + B4A SINE B4 3 280 -12 1 1461 796 276 0 0 chr11 114912431 114912587 -6931269 + RSINE1 SINE B4 10 165 0 1 1461 276 253 70 129 chr11 114912434 114912620 -6931236 + B2_Mm2 SINE B2 12 186 -9 1 1461 792 250 10 42 chr11 114912761 114912953 -6930903 + B3 SINE B2 8 193 -23 1 1461 615 316 171 18 chr11 114913065 114913622 -6930234 + L1MD2 LINE L1 5525 6166 -193 1 1461 610 203 25 0 chr11 114914229 114914347 -6929509 - B1_Mur2 SINE Alu -4 145 25 1 1461 376 320 0 61 chr11 114914232 114914395 -6929461 - ID_B1 SINE B4 -7 217 65 1 1461 540 327 60 5 chr11 114914958 114915158 -6928698 - ID_B1 SINE B4 -11 213 3 1 1461 423 0 0 0 chr11 114915361 114915408 -6928448 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1461 384 276 0 0 chr11 114915409 114915485 -6928371 - RSINE1 SINE B4 -87 78 3 1 1461 353 291 28 37 chr11 114917283 114917390 -6926466 + B1F SINE Alu 29 134 -15 1 1461 615 245 114 24 chr11 114917489 114917656 -6926200 - B3 SINE B2 -33 183 2 1 1461 1663 16 21 0 chr11 114918143 114918329 -6925527 + B2_Mm1t SINE B2 1 190 -3 1 1461 320 264 11 54 chr11 114918329 114918410 -6925446 + L1MEg LINE L1 1871 1950 -4134 1 1461 499 204 43 0 chr11 114918452 114918545 -6925311 + MTEa LTR MaLR 283 379 0 1 1461 205 253 35 71 chr11 114918698 114918783 -6925073 + MIRc SINE MIR 136 217 -51 1 1461 1124 23 0 0 chr11 114919425 114919556 -6924300 + B2_Mm1a SINE B2 1 131 -62 1 1461 303 224 8 93 chr11 114920230 114920348 -6923508 - PB1D10 SINE Alu -8 109 2 1 1461 259 278 44 11 chr11 114920407 114920498 -6923358 + L1MA5 LINE L1 6207 6300 0 1 1461 554 254 15 8 chr11 114920607 114920738 -6923118 - RSINE1 SINE B4 -31 134 3 1 1461 213 200 0 0 chr11 114920741 114920778 -6923078 + T-rich Low_complexity Low_complexity 14 50 0 1 1461 516 32 0 0 chr11 114920778 114920840 -6923016 + (TCC)n Simple_repeat Simple_repeat 3 64 0 1 1461 213 200 0 0 chr11 114920840 114920852 -6923004 + T-rich Low_complexity Low_complexity 2 13 0 1 1461 329 245 101 28 chr11 114920852 114920961 -6922895 - PB1D10 SINE Alu 0 117 1 1 1461 276 314 0 0 chr11 114921449 114921519 -6922337 - MER63D DNA AcHobo -678 383 314 1 1461 511 264 17 33 chr11 114921650 114921830 -6922026 + HAL1-2a_MD LINE L1 2338 2514 -510 1 1461 313 205 24 49 chr11 114921877 114921959 -6921897 - ID_B1 SINE B4 -1 223 144 1 1461 405 218 105 39 chr11 114922047 114922200 -6921656 + RSINE1 SINE B4 2 164 -1 1 1461 384 138 0 0 chr11 114922336 114922401 -6921455 + (CAA)n Simple_repeat Simple_repeat 1 65 0 1 1461 779 151 0 8 chr11 114922481 114922601 -6921255 - PB1D9 SINE Alu 0 120 2 1 1461 405 260 77 0 chr11 114922620 114922724 -6921132 - PB1D10 SINE Alu -5 112 1 1 1461 3867 173 44 50 chr11 114923813 114923944 -6919912 + RLTR13A LTR ERVK 1 117 -738 1 1461 2875 52 2 130 chr11 114923944 114924389 -6919467 + RLTR10 LTR ERVK 1 388 -2 1 1461 3867 173 44 50 chr11 114924389 114925117 -6918739 + RLTR13A LTR ERVK 118 855 0 1 1461 793 235 7 13 chr11 114925309 114925464 -6918392 - RSINE1 SINE B4 -4 161 8 1 1461 195 370 14 0 chr11 114925479 114925552 -6918304 + MIR SINE MIR 77 150 -112 1 1461 415 257 103 97 chr11 114925827 114925969 -6917887 - B3 SINE B2 -4 212 70 1 1461 673 239 149 0 chr11 114925969 114926157 -6917699 + B3 SINE B2 1 216 0 1 1461 399 83 0 0 chr11 114926206 114926266 -6917590 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1461 616 279 0 13 chr11 114926427 114926576 -6917280 + B1F SINE Alu 1 147 -2 1 1461 206 232 18 0 chr11 114926775 114926831 -6917025 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1461 390 21 0 0 chr11 114926848 114926895 -6916961 + (GTTTG)n Simple_repeat Simple_repeat 4 50 0 1 1461 283 314 110 101 chr11 114926899 114927108 -6916748 + MTE2b LTR MaLR 168 378 -1 1 1461 495 0 0 0 chr11 114927580 114927635 -6916221 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1461 669 22 0 11 chr11 114928012 114928102 -6915754 + L1Md_T LINE L1 6494 6582 0 1 1461 338 189 389 0 chr11 114928341 114928485 -6915371 - B3A SINE B2 -5 190 1 1 1461 418 249 63 10 chr11 114929877 114930011 -6913845 + B1F SINE Alu 1 139 -10 1 1461 950 296 107 4 chr11 114930002 114930273 -6913583 + MTEb LTR MaLR 80 378 -1 1 1461 606 177 0 50 chr11 114930349 114930468 -6913388 + RSINE1 SINE B4 18 130 -35 1 1461 223 104 42 0 chr11 114930571 114930619 -6913237 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1461 488 195 35 0 chr11 114930627 114930714 -6913142 + PB1D10 SINE Alu 19 108 -9 1 1461 763 204 22 0 chr11 114930721 114930858 -6912998 + B1_Mur1 SINE Alu 1 140 -9 1 1461 1048 151 36 0 chr11 114930974 114931140 -6912716 - B2_Mm2 SINE B2 -23 172 1 1 1461 229 275 114 29 chr11 114931142 114931247 -6912609 - MIRb SINE MIR -86 182 69 1 1461 775 73 0 0 chr11 114931255 114931351 -6912505 + B1_Mus1 SINE Alu 8 103 -45 1 1461 574 266 34 27 chr11 114931930 114932077 -6911779 + B4A SINE B4 3 150 -142 1 1461 665 139 20 0 chr11 114932077 114932178 -6911678 - B1_Mur1 SINE Alu -8 141 39 1 1461 657 241 267 42 chr11 114932175 114932482 -6911374 + MTD LTR MaLR 5 380 -39 1 1461 220 306 20 30 chr11 114933274 114933375 -6910481 + GA-rich Low_complexity Low_complexity 1 100 0 1 1461 442 270 31 31 chr11 114933619 114933749 -6910107 + ID_B1 SINE B4 74 203 -21 1 1461 723 108 53 18 chr11 114933638 114933751 -6910105 + B1_Mur4 SINE Alu 13 129 -21 1 1461 527 223 6 22 chr11 114933760 114933854 -6910002 + G-rich Low_complexity Low_complexity 3 93 0 1 1461 1216 34 0 48 chr11 114933854 114934041 -6909815 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 1 1461 527 223 6 22 chr11 114934041 114934125 -6909731 + G-rich Low_complexity Low_complexity 94 177 0 1 1461 363 250 41 160 chr11 114934147 114934366 -6909490 + B2_Mm2 SINE B2 1 193 -2 1 1461 182 175 73 24 chr11 114934948 114934989 -6908867 + L2a LINE L2 3112 3154 -272 1 1461 210 179 0 0 chr11 114935297 114935353 -6908503 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 1 1461 363 243 0 0 chr11 114935800 114935870 -6907986 - B4A SINE B4 -15 277 208 1 1461 1128 288 66 43 chr11 114935885 114936234 -6907622 + MTE2a LTR MaLR 19 375 -4 1 1461 690 294 14 38 chr11 114936233 114936442 -6907414 - B4A SINE B4 -82 210 7 1 1461 922 188 167 0 chr11 114938034 114938226 -6905630 - URR1B DNA MER1_type 0 225 2 1 1461 749 238 15 49 chr11 114938226 114938429 -6905427 + B3A SINE B2 2 197 -1 1 1461 437 252 35 26 chr11 114938471 114938585 -6905271 - PB1D10 SINE Alu -2 115 1 1 1461 253 285 185 0 chr11 114939147 114939277 -6904579 - MLT1J LTR MaLR -106 406 253 1 1461 427 226 38 38 chr11 114939322 114939428 -6904428 - MLT1J LTR MaLR -332 180 75 1 1461 436 281 80 15 chr11 114939456 114939593 -6904263 - HAL1-2a_MD LINE L1 -533 2491 2346 1 1461 648 275 208 27 chr11 114939676 114940012 -6903844 - MTD LTR MaLR 0 419 23 1 1461 562 233 140 6 chr11 114940106 114940270 -6903586 - ORR1D2 LTR MaLR -32 338 153 1 1461 443 254 211 18 chr11 114940373 114940600 -6903256 + MTEa LTR MaLR 63 333 -46 1 1461 604 188 44 15 chr11 114940960 114941095 -6902761 - MTD LTR MaLR -2 417 279 1 1461 243 315 0 0 chr11 114941095 114941149 -6902707 - RSINE1 SINE B4 -111 54 1 1 1461 1442 74 26 5 chr11 114941517 114941708 -6902148 - B2_Mm2 SINE B2 0 195 1 1 1461 1427 81 0 5 chr11 114941710 114941897 -6901959 - B2_Mm2 SINE B2 -9 186 1 1 1461 646 290 5 49 chr11 114941923 114942126 -6901730 - B3A SINE B2 0 198 5 1 1461 744 262 48 15 chr11 114942132 114942346 -6901510 - B3A SINE B2 0 216 3 1 1461 724 193 0 0 chr11 114942660 114942779 -6901077 + PB1D7 SINE Alu 1 119 -1 1 1461 666 251 35 29 chr11 114942791 114942963 -6900893 + B3A SINE B2 26 198 0 1 1461 862 125 0 15 chr11 114942978 114943097 -6900759 + B1_Mus2 SINE Alu 19 137 -10 1 1461 285 29 0 0 chr11 114943097 114943131 -6900725 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1 1461 906 193 0 0 chr11 114943159 114943304 -6900552 + B1_Mur4 SINE Alu 1 145 -5 1 1461 333 0 0 0 chr11 114943448 114943485 -6900371 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 1 1461 252 239 0 0 chr11 114944103 114944149 -6899707 - RSINE1 SINE B4 -20 145 100 1 1461 457 239 76 193 chr11 114944325 114944548 -6899308 - B3A SINE B2 0 198 2 1 1461 180 111 0 0 chr11 114945098 114945125 -6898731 + (CCGAG)n Simple_repeat Simple_repeat 1 27 0 1 1461 589 159 12 18 chr11 114945574 114945740 -6898116 + CT-rich Low_complexity Low_complexity 1 165 0 1 1461 440 217 36 0 chr11 114945742 114945825 -6898031 - B1F1 SINE Alu -52 97 12 1 1461 252 217 100 78 chr11 114945753 114945843 -6898013 - MT2B2 LTR ERVL -343 241 150 1 1461 193 306 55 14 chr11 114945956 114946029 -6897827 - MIRb SINE MIR -19 249 174 1 1461 271 162 25 0 chr11 114946741 114946821 -6897035 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1461 575 218 5 0 chr11 114946835 114947057 -6896799 + (TG)n Simple_repeat Simple_repeat 1 223 0 1 1461 484 246 6 6 chr11 114947081 114947257 -6896599 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1461 234 164 0 0 chr11 114947299 114947354 -6896502 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1461 307 332 126 77 chr11 114947393 114947654 -6896202 + ORR1E LTR MaLR 86 359 0 1 1461 944 289 38 47 chr11 114947788 114948108 -6895748 - ORR1E LTR MaLR -35 324 8 1 1461 400 243 114 65 chr11 114948377 114948500 -6895356 + B3 SINE B2 2 130 -86 1 1461 328 311 29 19 chr11 114948667 114948772 -6895084 + L1MC3 LINE L1 7669 7774 -11 1 1461 649 220 71 26 chr11 114948914 114949068 -6894788 + RSINE1 SINE B4 3 163 -2 1 1461 374 218 9 0 chr11 114949074 114949184 -6894672 + (CA)n Simple_repeat Simple_repeat 2 112 0 1 1461 300 336 89 62 chr11 114949187 114949412 -6894444 + HAL1-3A_ME LINE L1 1976 2206 -652 1 1461 501 104 0 0 chr11 114949412 114949489 -6894367 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 1 1461 428 282 204 0 chr11 114949490 114949632 -6894224 + MTD LTR MaLR 200 370 -49 1 1461 383 290 0 0 chr11 114949711 114949811 -6894045 + PB1D10 SINE Alu 18 117 0 1 182 418 294 55 11 chr11 114950119 114950301 -6893555 + L1MCb LINE L1 3 192 -5853 1 1462 311 325 128 39 chr11 114950593 114950700 -6893156 + L1MCb LINE L1 1146 1252 -5499 1 1462 862 234 40 5 chr11 114950700 114950898 -6892958 + B3 SINE B2 1 205 -11 1 1462 311 325 128 39 chr11 114950898 114951024 -6892832 + L1MCb LINE L1 1253 1400 -5351 1 1462 234 275 118 48 chr11 114951056 114951243 -6892613 + L1MCb LINE L1 1379 1578 -5173 1 1462 838 250 10 35 chr11 114951281 114951484 -6892372 - B3A SINE B2 0 198 1 1 1462 370 294 121 44 chr11 114951499 114951705 -6892151 + L1MCb LINE L1 1711 1932 -4728 1 1462 227 286 78 0 chr11 114951825 114951902 -6891954 - MIR SINE MIR -6 256 174 1 1462 713 232 69 21 chr11 114951903 114952092 -6891764 + B3A SINE B2 1 198 0 1 1462 665 180 62 41 chr11 114952114 114952259 -6891597 - B1_Mur1 SINE Alu 0 149 2 1 1462 350 256 12 12 chr11 114952321 114952404 -6891452 - ID4 SINE ID 0 83 1 1 1462 530 237 24 41 chr11 114953667 114953790 -6890066 + B1F SINE Alu 1 121 -28 1 1462 450 0 0 0 chr11 114953809 114953859 -6889997 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1462 185 302 141 16 chr11 114953966 114954030 -6889826 - MIR3 SINE MIR -38 170 99 1 1462 440 265 121 0 chr11 114954099 114954231 -6889625 + MER5A1 DNA MER1_type 12 159 -7 1 1462 1029 221 54 0 chr11 114954554 114954758 -6889098 - B3 SINE B2 -1 215 1 1 1462 372 133 0 0 chr11 114955162 114955222 -6888634 + (TTA)n Simple_repeat Simple_repeat 2 61 0 1 1462 319 341 44 15 chr11 114955560 114955697 -6888159 - MER121 Unknown Unknown -162 250 110 1 1462 682 221 29 40 chr11 114955706 114955880 -6887976 + HAL1-2a_MD LINE L1 2337 2508 -516 1 1462 910 239 14 38 chr11 114955880 114956093 -6887763 - B4A SINE B4 -82 210 3 1 1462 581 239 63 35 chr11 114956096 114956239 -6887617 - B1_Mur1 SINE Alu 0 149 3 1 1462 269 275 92 92 chr11 114956104 114956244 -6887612 - B4A SINE B4 -68 224 84 1 1462 296 211 208 10 chr11 114956244 114956340 -6887516 - PB1D10 SINE Alu -2 115 1 1 1462 269 275 92 92 chr11 114956340 114956351 -6887505 - B4A SINE B4 -209 83 73 1 1462 213 75 49 24 chr11 114956359 114956400 -6887456 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1462 396 59 0 0 chr11 114956432 114956483 -6887373 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1462 1023 219 0 0 chr11 114956484 114956662 -6887194 - B3 SINE B2 -38 178 1 1 1462 1181 61 85 6 chr11 114957225 114957390 -6886466 - B2_Mm2 SINE B2 -17 178 1 1 1462 255 227 0 0 chr11 114957598 114957664 -6886192 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1462 605 273 169 25 chr11 114958632 114958869 -6884987 + B4A SINE B4 22 292 0 1 1462 335 252 23 70 chr11 114958894 114959065 -6884791 + HAL1-2a_MD LINE L1 2343 2505 -519 1 1462 309 268 34 103 chr11 114959050 114959225 -6884631 + HAL1-2a_MD LINE L1 2343 2505 -519 1 1462 279 202 0 35 chr11 114959225 114959312 -6884544 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1462 552 265 16 11 chr11 114959459 114959598 -6884258 + PB1D10 SINE Alu 1 149 0 1 1462 315 342 9 0 chr11 114960390 114960501 -6883355 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1462 318 123 0 0 chr11 114961244 114961301 -6882555 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1462 278 315 11 0 chr11 114961397 114961489 -6882367 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 1462 401 236 44 35 chr11 114961573 114961687 -6882169 - PB1D10 SINE Alu -2 115 1 1 1462 209 311 96 48 chr11 114962116 114962241 -6881615 - MIRc SINE MIR -22 246 116 1 1462 414 252 130 9 chr11 114962510 114962618 -6881238 - B4 SINE B4 -171 121 1 1 1462 561 287 14 14 chr11 114963471 114963616 -6880240 + RSINE1 SINE B4 3 147 -18 1 1462 468 91 0 0 chr11 114963616 114963682 -6880174 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1462 215 191 0 60 chr11 114964042 114964109 -6879747 + C-rich Low_complexity Low_complexity 1 63 0 1 1462 821 60 267 0 chr11 114964161 114964277 -6879579 + B1_Mm SINE Alu 1 147 0 1 1462 237 306 42 0 chr11 114964446 114964518 -6879338 - MLT1K LTR MaLR -5 590 516 1 1462 452 210 22 22 chr11 114964561 114964741 -6879115 + CT-rich Low_complexity Low_complexity 1 180 0 1 1462 215 277 0 0 chr11 114964741 114964788 -6879068 + C-rich Low_complexity Low_complexity 2 48 0 1 1462 294 280 60 90 chr11 114964789 114965041 -6878815 - MLT1K LTR MaLR -160 435 152 1 1462 791 163 7 7 chr11 114965121 114965257 -6878599 + B1_Mur1 SINE Alu 7 142 -7 1 1462 228 321 22 56 chr11 114965812 114965901 -6877955 + MER45R DNA Tip100 1 86 -1495 1 1462 1231 109 33 0 chr11 114965965 114966148 -6877708 - B2_Mm2 SINE B2 -6 189 1 1 1462 628 225 0 48 chr11 114966712 114966857 -6876999 + B1F2 SINE Alu 6 143 -6 1 1462 613 315 5 15 chr11 114966870 114967070 -6876786 + B3A SINE B2 1 198 0 1 1462 402 235 88 0 chr11 114967127 114967263 -6876593 + Tigger7 DNA MER2_type 2243 2390 -101 1 1462 2053 162 112 15 chr11 114967297 114967691 -6876165 - RMER4B LTR ERVK -137 448 17 1 1462 219 170 0 0 chr11 114967699 114967746 -6876110 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1462 454 206 29 76 chr11 114968263 114968368 -6875488 + B4A SINE B4 6 105 -187 1 1462 687 243 0 0 chr11 114968371 114968655 -6875201 + (CA)n Simple_repeat Simple_repeat 1 284 0 1 1462 261 232 0 0 chr11 114968668 114968737 -6875119 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1462 471 18 0 0 chr11 114968738 114968794 -6875062 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1462 522 285 80 58 chr11 114969881 114970157 -6873699 - B4A SINE B4 -8 284 3 1 1462 811 240 22 52 chr11 114970158 114970387 -6873469 - B4 SINE B4 -62 230 9 1 1462 389 350 96 15 chr11 114970513 114970783 -6873073 + Tigger13a DNA MER2_type 2 293 -478 1 1462 493 303 21 57 chr11 114970791 114970931 -6872925 + RSINE1 SINE B4 2 136 -29 1 1462 935 217 37 0 chr11 114971073 114971262 -6872594 + B3 SINE B2 8 203 -13 1 1462 242 284 82 21 chr11 114971305 114971402 -6872454 + ORR1E LTR MaLR 3 105 -254 1 1462 243 285 71 78 chr11 114971444 114971585 -6872271 + ORR1E LTR MaLR 63 202 -157 1 1462 369 0 0 0 chr11 114971631 114971672 -6872184 + (TCCC)n Simple_repeat Simple_repeat 3 43 0 1 1462 243 349 71 36 chr11 114971743 114971939 -6871917 + Tigger13a DNA MER2_type 414 616 -155 1 1462 1169 135 11 0 chr11 114971950 114972128 -6871728 + B2_Mm1t SINE B2 1 180 -13 1 1462 591 245 61 25 chr11 114972138 114972301 -6871555 + B3 SINE B2 48 216 0 1 1462 295 276 40 0 chr11 114972594 114972670 -6871186 + ID4_ SINE ID 3 81 -2 1 1462 565 246 37 15 chr11 114972733 114972869 -6870987 - B1_Mur1 SINE Alu -1 148 10 1 1462 1047 179 10 55 chr11 114973025 114973226 -6870630 - B3A SINE B2 -6 192 1 1 1462 424 292 56 64 chr11 114973241 114973508 -6870348 + L5 LINE RTE 961 1225 -1040 1 1462 653 236 6 69 chr11 114973941 114974114 -6869742 + RSINE1 SINE B4 4 165 0 1 1462 471 73 0 0 chr11 114974171 114974239 -6869617 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1462 568 291 44 22 chr11 114974263 114974534 -6869322 - RLTR15 LTR ERVK 0 359 83 1 1462 586 220 127 57 chr11 114974556 114974768 -6869088 - RLTR15 LTR ERVK -132 227 1 1 1462 319 56 37 0 chr11 114974946 114975000 -6868856 + (TTG)n Simple_repeat Simple_repeat 2 57 0 1 1462 306 0 0 0 chr11 114975318 114975352 -6868504 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1462 1367 202 77 36 chr11 114975558 114975922 -6867934 + Lx5 LINE L1 6672 7050 0 1 1462 581 209 26 9 chr11 114975964 114976080 -6867776 + B1_Mus1 SINE Alu 31 148 0 1 1462 210 62 61 20 chr11 114976123 114976172 -6867684 + (CAAA)n Simple_repeat Simple_repeat 4 54 0 1 1462 1060 143 98 39 chr11 114976222 114976426 -6867430 + B3 SINE B2 1 216 0 1 1462 504 282 23 15 chr11 114976458 114976591 -6867265 + RSINE1 SINE B4 2 135 -30 1 1462 403 317 27 20 chr11 114976852 114977000 -6866856 - ORR1E LTR MaLR -210 149 1 1 1462 804 145 13 110 chr11 114977362 114977517 -6866339 + B1_Mur4 SINE Alu 10 149 -1 1 1462 491 300 75 37 chr11 114977697 114977733 -6866123 - MLT1D LTR MaLR -290 215 183 1 1462 678 47 0 0 chr11 114977733 114977819 -6866037 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 1462 491 300 75 37 chr11 114977819 114977969 -6865887 - MLT1D LTR MaLR -323 182 22 1 1462 428 0 19 0 chr11 114979194 114979246 -6864610 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1462 220 102 41 0 chr11 114980124 114980173 -6863683 + (TTTTG)n Simple_repeat Simple_repeat 4 54 0 1 1462 1035 55 6 88 chr11 114980176 114980335 -6863521 - B1_Mus1 SINE Alu 0 148 3 1 1462 804 258 0 47 chr11 114980451 114980622 -6863234 + RSINE1 SINE B4 3 165 0 1 1462 911 169 0 33 chr11 114980664 114980817 -6863039 + B1_Mur2 SINE Alu 1 148 -1 1 1462 208 261 0 0 chr11 114981684 114981730 -6862126 + (CACCAT)n Simple_repeat Simple_repeat 3 48 0 1 1462 1220 46 7 0 chr11 114981907 114982059 -6861797 + B2_Mm2 SINE B2 2 154 -41 1 1462 330 26 0 0 chr11 114982060 114982099 -6861757 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1462 252 238 61 24 chr11 114982214 114982296 -6861560 + MLT1C LTR MaLR 68 152 -315 1 1462 238 279 177 16 chr11 114982370 114982494 -6861362 + YREP_Mm Unknown Unknown 163 306 -1506 1 1462 374 277 58 67 chr11 114982383 114982503 -6861353 - PB1D9 SINE Alu -1 119 1 1 1462 877 230 58 10 chr11 114982606 114982812 -6861044 + B3 SINE B2 1 216 0 1 1462 295 235 212 0 chr11 114982910 114982995 -6860861 + MLT1B LTR MaLR 69 171 -219 1 1462 1158 239 31 19 chr11 114983000 114983256 -6860600 + B4 SINE B4 2 260 -32 1 1462 333 0 0 0 chr11 114983261 114983298 -6860558 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1462 465 160 0 0 chr11 114983298 114983404 -6860452 + GA-rich Low_complexity Low_complexity 1 106 0 1 1462 335 282 0 15 chr11 114983477 114983574 -6860282 + ID4 SINE ID 12 103 -49 1 1462 1064 186 55 0 chr11 114983690 114983889 -6859967 + B3 SINE B2 1 210 -6 1 1462 261 270 43 43 chr11 114984098 114984191 -6859665 + MIRc SINE MIR 117 209 -59 1 1462 624 264 143 0 chr11 114984198 114984380 -6859476 + ID_B1 SINE B4 2 209 -15 1 1462 222 220 20 0 chr11 114984388 114984438 -6859418 + GA-rich Low_complexity Low_complexity 3 53 0 1 1462 242 95 24 0 chr11 114984485 114984527 -6859329 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1462 689 176 100 90 chr11 114984528 114984546 -6859310 - B3 SINE B2 -13 203 189 1 1462 1065 128 0 0 chr11 114984546 114984726 -6859130 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1462 689 176 100 90 chr11 114984726 114984762 -6859094 - B3 SINE B2 -28 188 164 1 1462 1002 144 0 0 chr11 114984762 114984942 -6858914 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1462 689 176 100 90 chr11 114984942 114985086 -6858770 - B3 SINE B2 -53 163 2 1 1462 261 0 0 0 chr11 114985168 114985197 -6858659 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 1462 432 0 0 0 chr11 114985197 114985244 -6858612 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1462 183 80 0 0 chr11 114985361 114985386 -6858470 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1 1462 1133 176 19 24 chr11 114986045 114986255 -6857601 + B3 SINE B2 8 216 0 1 1462 224 130 22 0 chr11 114986556 114986602 -6857254 + (CCA)n Simple_repeat Simple_repeat 1 47 0 1 1462 757 177 0 0 chr11 114987046 114987170 -6856686 + B3 SINE B2 7 130 -86 1 1462 351 0 0 0 chr11 114987231 114987270 -6856586 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1462 600 240 23 8 chr11 114987955 114988085 -6855771 + B1_Mur2 SINE Alu 1 132 -17 1 1462 531 252 0 0 chr11 114988150 114988257 -6855599 + PB1D10 SINE Alu 4 110 -7 1 1462 384 22 0 0 chr11 114988273 114988318 -6855538 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1462 1155 89 81 32 chr11 114988425 114988611 -6855245 - B2_Mm2 SINE B2 0 195 1 1 1462 1219 178 14 5 chr11 114988648 114988857 -6854999 - B3 SINE B2 0 216 6 1 1462 763 226 85 38 chr11 114988849 114989084 -6854772 - B4A SINE B4 -46 246 1 1 1462 885 204 0 18 chr11 114989559 114989724 -6854132 + RSINE1 SINE B4 2 163 -2 1 1462 323 235 34 34 chr11 114989921 114990009 -6853847 - MTEa LTR MaLR -3 376 289 1 1462 189 51 24 49 chr11 114990084 114990125 -6853731 + (GGAGA)n Simple_repeat Simple_repeat 2 41 0 1 1462 457 261 98 44 chr11 114990135 114990339 -6853517 - MTEa LTR MaLR -164 215 1 1 1462 1145 71 0 0 chr11 114990470 114990610 -6853246 + B1_Mus2 SINE Alu 2 141 -6 1 1462 253 0 26 26 chr11 114990613 114990651 -6853205 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1462 264 360 34 93 chr11 114990667 114990804 -6853052 + B3A SINE B2 5 134 -64 1 1462 234 0 0 0 chr11 114990804 114990830 -6853026 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1462 772 251 6 12 chr11 114990830 114990853 -6853003 + RSINE1 SINE B4 143 165 0 1 1462 264 360 34 93 chr11 114990853 114990897 -6852959 + B3A SINE B2 135 197 -1 1 1462 313 254 41 98 chr11 114990923 114991045 -6852811 + PB1D10 SINE Alu 3 117 0 1 1462 195 129 0 0 chr11 114991045 114991076 -6852780 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1462 245 319 0 28 chr11 114991086 114991157 -6852699 + ID SINE ID 1 69 -155 1 1462 289 355 40 50 chr11 114991247 114991549 -6852307 - L1MB7 LINE L1 -28 6156 5858 1 1462 1025 179 11 21 chr11 114991634 114991806 -6852050 + B3A SINE B2 1 172 -26 1 1462 279 0 0 0 chr11 114991806 114991837 -6852019 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1462 225 0 0 0 chr11 114991837 114991861 -6851995 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1462 1025 179 11 21 chr11 114991861 114991875 -6851981 + B3A SINE B2 173 185 -13 1 1462 23 0 0 0 chr11 114991989 114992012 -6851844 + AT_rich Low_complexity Low_complexity 1 23 0 1 1462 346 303 81 0 chr11 114992254 114992353 -6851503 - ID_B1 SINE B4 -2 222 116 1 1462 248 261 117 70 chr11 114992353 114992378 -6851478 - B1F SINE Alu -1 144 15 1 1462 182 347 38 64 chr11 114992489 114992646 -6851210 - L2 LINE L2 -424 2995 2843 1 1462 397 167 22 0 chr11 114992757 114992801 -6851055 + polypyrimidine Low_complexity Low_complexity 47 92 0 1 1462 1130 62 6 0 chr11 114992801 114992961 -6850895 + (TTC)n Simple_repeat Simple_repeat 3 163 0 1 1462 397 167 22 0 chr11 114992961 114993006 -6850850 + polypyrimidine Low_complexity Low_complexity 2 46 0 1 1462 552 213 157 60 chr11 114993053 114993238 -6850618 - B3 SINE B2 -13 203 1 1 1462 252 341 167 0 chr11 114993242 114993380 -6850476 - L2 LINE L2 -978 2441 2281 1 1462 637 197 44 29 chr11 114993450 114993586 -6850270 - URR1B DNA MER1_type 0 225 88 1 1462 508 254 186 15 chr11 114993633 114993933 -6849923 + L1MA4 LINE L1 5677 6010 -302 1 1462 619 263 21 21 chr11 114994013 114994153 -6849703 - B1_Mur1 SINE Alu -5 144 5 1 1462 290 348 8 102 chr11 114994038 114994166 -6849690 - MT2B LTR ERVL -330 271 156 1 1462 950 104 0 0 chr11 114994295 114994429 -6849427 - URR1A DNA MER1_type 0 226 93 1 1462 1265 34 0 7 chr11 114994442 114994590 -6849266 - B1_Mm SINE Alu 0 147 1 1 1462 272 160 0 20 chr11 114994609 114994660 -6849196 + 4.5SRNA scRNA scRNA 40 89 -5 1 1462 246 235 0 81 chr11 114994660 114994683 -6849173 + PB1D10 SINE Alu 42 109 -8 1 1462 439 292 9 26 chr11 114995647 114995763 -6848093 + ID_B1 SINE B4 98 211 -13 1 1462 361 224 0 29 chr11 114995773 114995842 -6848014 + ID4 SINE ID 7 73 -10 1 1462 1060 63 0 34 chr11 114995945 114995957 -6847899 - B1_Mus1 SINE Alu 0 148 141 1 1462 243 0 0 0 chr11 114995957 114995984 -6847872 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1462 1060 63 0 34 chr11 114995984 114996119 -6847737 - B1_Mus1 SINE Alu -8 140 6 1 1462 246 156 0 0 chr11 114996787 114996832 -6847024 + A-rich Low_complexity Low_complexity 1 45 0 1 1462 3426 28 5 0 chr11 114996995 114997387 -6846469 + MTA_Mm LTR MaLR 1 394 -2 1 1462 9590 27 0 0 chr11 114997389 114998485 -6845371 + MTA_Mm-int LTR MaLR 1 1096 -2 1 1462 3453 38 2 0 chr11 114998486 114998881 -6844975 + MTA_Mm LTR MaLR 1 396 0 1 1462 288 273 104 0 chr11 114999046 114999123 -6844733 + ID_B1 SINE B4 123 207 -17 1 1462 787 234 53 11 chr11 114999426 114999616 -6844240 + B3A SINE B2 1 198 0 1 1462 542 327 40 81 chr11 114999623 114999846 -6844010 + B3 SINE B2 2 215 -1 1 1462 787 94 0 0 chr11 114999858 114999964 -6843892 - B1_Mus2 SINE Alu 0 147 42 1 1462 382 208 63 25 chr11 114999903 114999982 -6843874 - MT2B LTR ERVL -344 257 176 1 1462 329 333 22 7 chr11 115000123 115000262 -6843594 + Arthur1A DNA Tip100 11 151 -26 1 1462 418 291 196 22 chr11 115000283 115000554 -6843302 + MLT1H LTR MaLR 36 353 -196 2 1462 539 211 168 22 chr11 115000890 115001069 -6842787 + B3 SINE B2 11 215 -1 3 1462 963 157 14 0 chr11 115001069 115001209 -6842647 + B1_Mur4 SINE Alu 1 142 -8 4 1462 450 0 0 0 chr11 115001210 115001260 -6842596 + (CATA)n Simple_repeat Simple_repeat 4 53 0 5 1462 707 315 32 44 chr11 115001447 115001696 -6842160 - MTEa LTR MaLR -133 246 1 6 1462 405 0 0 0 chr11 115001814 115001859 -6841997 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1462 491 252 39 23 chr11 115001859 115001989 -6841867 - B1F SINE Alu -15 134 3 8 1462 3020 40 0 0 chr11 115002085 115002431 -6841425 - ORR1A1 LTR MaLR 0 346 1 9 1462 377 39 0 19 chr11 115002558 115002610 -6841246 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1462 492 342 0 25 chr11 115002807 115002966 -6840890 - ID_B1 SINE B4 -1 223 69 1 1462 370 181 0 14 chr11 115003010 115003083 -6840773 - ID_B1 SINE B4 -21 203 132 1 1462 451 208 0 0 chr11 115003085 115003162 -6840694 - ID4_ SINE ID -6 77 1 1 1462 234 0 0 0 chr11 115003614 115003640 -6840216 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 1 1462 662 65 11 0 chr11 115003640 115003732 -6840124 + (TTC)n Simple_repeat Simple_repeat 3 95 0 1 1462 1063 46 22 22 chr11 115003737 115003916 -6839940 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1462 231 36 0 0 chr11 115003916 115003944 -6839912 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1462 294 274 78 0 chr11 115004091 115004193 -6839663 + PB1D10 SINE Alu 8 117 0 1 1462 508 226 87 24 chr11 115004261 115004388 -6839468 - RSINE1 SINE B4 -28 137 3 1 1462 284 331 0 113 chr11 115004466 115004643 -6839213 + RSINE1 SINE B4 2 158 -7 2 1462 186 43 0 0 chr11 115004648 115004671 -6839185 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1462 1457 53 5 35 chr11 115004708 115004905 -6838951 - B2_Mm1t SINE B2 -1 192 2 2 1462 180 0 0 0 chr11 115004915 115004935 -6838921 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1462 1068 120 0 0 chr11 115004935 115005085 -6838771 - B1_Mur4 SINE Alu 0 150 1 2 1462 517 281 36 7 chr11 115005217 115005357 -6838499 + B1F2 SINE Alu 3 146 -3 2 1462 779 210 12 12 chr11 115005406 115005570 -6838286 - B3 SINE B2 -5 211 48 2 1462 306 300 26 44 chr11 115006568 115006705 -6837151 - LTR16B2 LTR ERVL -9 454 316 2 1462 494 322 6 33 chr11 115006717 115006897 -6836959 - LTR16B2 LTR ERVL -241 221 47 2 1462 580 275 21 21 chr11 115007146 115007291 -6836565 - RSINE1 SINE B4 -18 147 3 2 1462 288 0 0 0 chr11 115007341 115007373 -6836483 + (TATG)n Simple_repeat Simple_repeat 2 33 0 2 1462 412 238 27 4 chr11 115007474 115007739 -6836117 + (TG)n Simple_repeat Simple_repeat 1 271 0 3 1462 375 60 0 0 chr11 115008468 115008518 -6835338 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1462 1218 160 5 10 chr11 115009734 115009942 -6833914 - B3 SINE B2 0 216 10 3 1462 207 0 0 0 chr11 115009961 115009984 -6833872 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1462 1499 281 44 27 chr11 115010417 115010897 -6832959 - MTE-int LTR MaLR -1091 489 2 3 1462 554 370 59 21 chr11 115010938 115011228 -6832628 - ORR1E LTR MaLR -56 303 3 3 1462 3490 35 2 0 chr11 115011523 115011918 -6831938 - MTA_Mm LTR MaLR 0 396 1 3 1462 2152 200 65 37 chr11 115013114 115013650 -6830206 - RLTR20A1 LTR ERVK 0 551 1 3 1462 539 292 108 51 chr11 115013761 115013917 -6829939 - MLT1C LTR MaLR -154 313 139 3 1462 849 219 335 3 chr11 115013917 115014201 -6829655 - MTE2b LTR MaLR 0 379 2 3 1462 539 292 108 51 chr11 115014201 115014340 -6829516 - MLT1C LTR MaLR -329 138 1 3 1462 455 240 21 10 chr11 115017697 115017794 -6826062 - PB1D9 SINE Alu -18 102 5 4 1462 252 159 0 0 chr11 115020590 115020634 -6823222 - MER117 DNA MER1_type -43 154 111 4 1462 255 197 6 24 chr11 115020760 115020829 -6823027 - PB1 SINE Alu 0 127 48 4 1462 216 67 0 0 chr11 115022958 115022988 -6820868 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1462 205 259 0 18 chr11 115025616 115025671 -6818185 + CT-rich Low_complexity Low_complexity 2 55 0 4 1462 206 57 0 54 chr11 115026677 115026714 -6817142 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 4 1462 468 226 102 24 chr11 115027526 115027653 -6816203 - B1F2 SINE Alu -2 147 11 4 1462 628 173 46 23 chr11 115027728 115027858 -6815998 - B1_Mur1 SINE Alu -4 145 13 4 1462 232 369 0 45 chr11 115027860 115027948 -6815908 - B1F2 SINE Alu -45 104 21 4 1462 245 100 20 0 chr11 115027979 115028029 -6815827 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1462 246 209 14 82 chr11 115028030 115028103 -6815753 - tRNA-Ala-GCY_ tRNA tRNA 0 75 8 5 1462 397 157 14 0 chr11 115028045 115028115 -6815741 - B4 SINE B4 -220 72 2 5 1462 534 290 70 5 chr11 115028217 115028404 -6815452 + MIR SINE MIR 61 259 -3 5 1462 457 206 46 18 chr11 115028524 115028633 -6815223 + PB1D7 SINE Alu 1 112 -8 5 1462 200 294 34 76 chr11 115028779 115028897 -6814959 + L2c LINE L2 3275 3387 0 5 1462 241 387 45 34 chr11 115029032 115029211 -6814645 + MIRb SINE MIR 26 206 -62 5 1462 685 203 0 8 chr11 115029454 115029573 -6814283 + PB1D9 SINE Alu 2 119 -1 5 1462 1212 55 0 7 chr11 115030258 115030406 -6813450 + B1_Mus1 SINE Alu 2 148 0 5 1462 1546 56 0 30 chr11 115031131 115031332 -6812524 - B2_Mm2 SINE B2 0 195 1 5 1462 458 296 189 26 chr11 115031439 115031630 -6812226 + ID_B1 SINE B4 1 222 -2 5 1462 784 159 0 50 chr11 115031711 115031850 -6812006 + B1_Mm SINE Alu 3 134 -13 6 1462 759 176 0 35 chr11 115031910 115032051 -6811805 - B1_Mm SINE Alu -1 146 11 6 1462 314 148 0 0 chr11 115032136 115032190 -6811666 - B1_Mur4 SINE Alu -46 104 51 6 1462 496 341 52 9 chr11 115032260 115032470 -6811386 + MIRb SINE MIR 50 268 0 6 1462 213 39 0 0 chr11 115032905 115032931 -6810925 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1462 929 213 42 9 chr11 115034415 115034628 -6809228 - URR1B DNA MER1_type -2 223 4 6 1462 180 0 0 0 chr11 115034723 115034743 -6809113 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1462 1048 96 11 0 chr11 115035801 115035978 -6807878 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1462 395 259 71 9 chr11 115035995 115036108 -6807748 - RSINE1 SINE B4 -42 123 4 6 1462 224 304 54 31 chr11 115036336 115036465 -6807391 - MIRc SINE MIR -60 208 77 6 1462 237 327 27 45 chr11 115036769 115036881 -6806975 + RSINE1 SINE B4 22 131 -34 7 1462 189 0 0 0 chr11 115037990 115038011 -6805845 + (GCTG)n Simple_repeat Simple_repeat 1 21 0 7 1462 222 216 73 83 chr11 115038223 115038319 -6805537 - MIR3 SINE MIR -11 197 103 7 1462 538 198 57 8 chr11 115039705 115039827 -6804029 - RSINE1 SINE B4 -34 131 4 7 1462 255 182 72 43 chr11 115040207 115040276 -6803580 + Charlie9 DNA MER1_type 2687 2757 0 7 1462 549 267 135 100 chr11 115045356 115045556 -6798300 + B4 SINE B4 60 266 -26 7 1462 225 0 0 0 chr11 115045580 115045605 -6798251 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1462 268 279 26 35 chr11 115046498 115046613 -6797243 + PB1D10 SINE Alu 3 116 -1 7 1462 631 159 142 8 chr11 115046728 115046855 -6797001 + B1_Mur1 SINE Alu 3 146 -3 7 1462 25 0 0 0 chr11 115046858 115046883 -6796973 + AT_rich Low_complexity Low_complexity 1 25 0 7 1462 1097 51 0 55 chr11 115046982 115047127 -6796729 + B1_Mus1 SINE Alu 1 137 -11 8 1462 647 209 0 56 chr11 115047824 115047966 -6795890 - B1_Mur1 SINE Alu -9 140 7 8 1462 743 279 15 26 chr11 115049845 115050040 -6793816 - B3A SINE B2 -4 194 2 8 1462 315 113 0 0 chr11 115050616 115050669 -6793187 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1462 264 224 0 0 chr11 115051248 115051315 -6792541 + (TA)n Simple_repeat Simple_repeat 1 67 0 8 1462 860 262 15 15 chr11 115051333 115051538 -6792318 - B3 SINE B2 -11 205 1 8 1462 318 80 0 0 chr11 115051759 115051809 -6792047 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 1462 338 321 48 37 chr11 115051809 115052032 -6791824 - Lx7 LINE L1 -247 7226 6994 8 1462 1077 96 0 7 chr11 115052089 115052236 -6791620 - B1_Mus1 SINE Alu 0 148 3 8 1462 186 118 0 0 chr11 115052281 115052315 -6791541 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1462 1354 146 24 14 chr11 115052340 115052549 -6791307 - B3 SINE B2 -1 215 5 9 1462 340 319 0 0 chr11 115052569 115052660 -6791196 + CT-rich Low_complexity Low_complexity 3 93 0 9 1462 544 230 88 58 chr11 115052666 115052837 -6791019 - B3A SINE B2 0 198 23 9 1462 401 299 0 49 chr11 115052831 115052954 -6790902 - B4A SINE B4 -94 198 82 9 1462 689 264 70 28 chr11 115052952 115053166 -6790690 - B4A SINE B4 -68 224 2 9 1462 229 120 60 0 chr11 115053170 115053220 -6790636 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 9 1462 1250 41 0 0 chr11 115053220 115053365 -6790491 - B1_Mus2 SINE Alu -1 146 2 9 1462 837 235 48 14 chr11 115053921 115054128 -6789728 - B3 SINE B2 0 216 3 9 1462 565 119 23 15 chr11 115054137 115054255 -6789601 - B1_Mus2 SINE Alu -1 147 34 9 1462 7985 65 9 3 chr11 115054294 115055598 -6788258 - L1Md_F2 LINE L1 -1 6581 5296 9 1462 1067 120 223 0 chr11 115055607 115055782 -6788074 - B3 SINE B2 0 216 3 1 1462 289 242 32 42 chr11 115055942 115056037 -6787819 - RLTR14 LTR ERV1 -3 379 286 1 1462 318 193 0 0 chr11 115057008 115057065 -6786791 - RSINE1 SINE B4 -21 144 88 1 1462 1119 89 0 0 chr11 115057091 115057248 -6786608 + (TCC)n Simple_repeat Simple_repeat 3 159 0 1 1462 271 333 54 0 chr11 115057262 115057355 -6786501 - B1F SINE Alu -51 98 1 1 1462 511 271 131 7 chr11 115057814 115057959 -6785897 - RSINE1 SINE B4 0 165 3 1 1462 655 248 27 7 chr11 115057996 115058142 -6785714 + B1F1 SINE Alu 1 149 0 1 1462 240 228 0 0 chr11 115059189 115059246 -6784610 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 1 1462 875 204 45 68 chr11 115059496 115059680 -6784176 + B3 SINE B2 1 188 -28 1 1462 294 29 0 0 chr11 115059680 115059715 -6784141 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1462 875 204 45 68 chr11 115059715 115059751 -6784105 + B3 SINE B2 189 216 0 1 1462 271 321 63 35 chr11 115059754 115059896 -6783960 + ID_B1 SINE B4 79 224 0 1 1462 2199 139 142 11 chr11 115061347 115061719 -6782137 - MTC LTR MaLR 0 421 1 1 1462 288 0 0 0 chr11 115061848 115061880 -6781976 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1462 513 196 20 0 chr11 115061881 115061983 -6781873 - RSINE1 SINE B4 -61 104 1 1 1462 202 314 63 0 chr11 115062861 115062966 -6780890 + MIRm SINE MIR 65 175 -93 1 1462 217 320 25 25 chr11 115063115 115063195 -6780661 + ID SINE ID 1 80 -144 1 1462 553 239 137 98 chr11 115064639 115064843 -6779013 - B4A SINE B4 0 292 81 1 1462 340 281 39 10 chr11 115064956 115065060 -6778796 - MER20 DNA MER1_type 0 219 113 1 1462 208 139 0 0 chr11 115065534 115065570 -6778286 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1462 315 0 0 0 chr11 115065891 115065926 -6777930 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1462 567 315 19 0 chr11 115065939 115066101 -6777755 - RSINE1 SINE B4 0 165 1 1 1462 427 280 16 78 chr11 115069708 115069922 -6773934 + B4A SINE B4 94 286 -6 1 1462 542 221 61 8 chr11 115070907 115071039 -6772817 - ID_B1 SINE B4 0 224 86 1 1462 312 27 0 0 chr11 115073917 115073954 -6769902 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 1 1462 399 214 12 0 chr11 115074039 115074123 -6769733 - B3A SINE B2 -111 87 3 1 1462 454 274 0 45 chr11 115074142 115074253 -6769603 - PB1D10 SINE Alu -11 106 1 1 1462 2350 153 66 2 chr11 115074551 115074945 -6768911 - MTC LTR MaLR -2 419 1 1 1462 515 279 21 35 chr11 115075652 115075797 -6768059 + RSINE1 SINE B4 8 150 -15 1 1462 180 0 0 0 chr11 115076286 115076306 -6767550 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1 1462 375 23 0 0 chr11 115076567 115076611 -6767245 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 1 1462 846 176 49 0 chr11 115077299 115077441 -6766415 + B1_Mur3 SINE Alu 1 149 0 1 1462 1233 55 0 0 chr11 115077494 115077639 -6766217 + B1_Mus1 SINE Alu 2 146 -2 1 1462 294 29 0 0 chr11 115077639 115077674 -6766182 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1462 1108 225 71 114 chr11 115077678 115078029 -6765827 - MTE2a LTR MaLR -43 336 1 1 1462 749 181 36 7 chr11 115078203 115078342 -6765514 + B1_Mur2 SINE Alu 1 143 -6 1 1462 299 374 36 0 chr11 115079378 115079517 -6764339 + MIRb SINE MIR 3 146 -122 1 1462 463 304 75 8 chr11 115080138 115080301 -6763555 - B3A SINE B2 -1 215 43 1 1462 465 318 7 26 chr11 115080435 115080590 -6763266 + RSINE1 SINE B4 8 159 -6 1 1462 438 271 10 0 chr11 115080623 115080719 -6763137 + B3A SINE B2 2 98 -100 1 1463 315 224 165 48 chr11 115081515 115081618 -6762238 + PB1 SINE Alu 11 125 -2 1 1463 305 204 0 0 chr11 115081703 115081757 -6762099 - MTC LTR MaLR 0 421 368 1 1463 1091 112 84 21 chr11 115081753 115081944 -6761912 - MTC LTR MaLR -218 203 1 1 1463 3311 174 187 19 chr11 115081945 115082932 -6760924 - MTC-int LTR MaLR -6 1252 1 1 1463 1090 174 223 4 chr11 115082932 115083192 -6760664 - MTC LTR MaLR 0 421 105 1 1463 279 0 0 0 chr11 115084126 115084157 -6759699 + (GCTG)n Simple_repeat Simple_repeat 1 31 0 1 1463 1340 150 9 14 chr11 115085919 115086142 -6757714 + URR1B DNA MER1_type 4 225 0 1 1463 356 196 92 37 chr11 115089108 115089207 -6754649 - ID_B1 SINE B4 -168 124 21 1 1463 229 329 63 40 chr11 115089948 115090108 -6753748 - MIR3 SINE MIR -53 155 9 1 1463 692 234 103 0 chr11 115090504 115090579 -6753277 + ID_B1 SINE B4 1 94 -130 1 1463 263 267 131 49 chr11 115090579 115090701 -6753155 + B1F2 SINE Alu 1 132 -17 1 1463 469 283 55 10 chr11 115091462 115091615 -6752241 + ID_B1 SINE B4 84 246 -46 1 1463 320 366 9 66 chr11 115091797 115092025 -6751831 + B4A SINE B4 4 218 -74 1 1463 404 297 47 33 chr11 115092078 115092228 -6751628 + B3 SINE B2 65 216 0 1 1463 421 270 18 114 chr11 115092228 115092395 -6751461 + B4 SINE B4 70 220 -72 1 1463 869 115 7 73 chr11 115092246 115092396 -6751460 + B1_Mur4 SINE Alu 6 145 -5 1 1463 1144 101 11 0 chr11 115092399 115092577 -6751279 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1463 932 228 43 14 chr11 115093849 115094058 -6749798 - B3 SINE B2 0 216 2 1 1463 1409 5 9 9 chr11 115096274 115096490 -6747366 + (TG)n Simple_repeat Simple_repeat 1 216 0 1 1463 213 344 0 0 chr11 115096912 115096976 -6746880 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1463 22 0 0 0 chr11 115097384 115097406 -6746450 + AT_rich Low_complexity Low_complexity 1 22 0 1 1463 216 67 0 0 chr11 115097858 115097888 -6745968 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 1 1463 231 36 0 0 chr11 115098603 115098631 -6745225 + (CAGGA)n Simple_repeat Simple_repeat 1 28 0 1 1463 253 283 17 0 chr11 115098692 115098752 -6745104 - ID SINE ID -149 75 15 1 1463 722 228 9 59 chr11 115098968 115099166 -6744690 + B3A SINE B2 2 186 -9 1 1463 802 121 120 8 chr11 115099179 115099312 -6744544 + B1_Mur3 SINE Alu 1 148 -1 1 1463 403 236 109 36 chr11 115099372 115099482 -6744374 + ID_B1 SINE B4 78 195 -29 1 1463 819 241 25 0 chr11 115099492 115099650 -6744206 - RSINE1 SINE B4 0 165 4 1 1463 285 361 60 26 chr11 115101072 115101223 -6742633 + L2b LINE L2 3218 3373 -2 1 1463 279 292 53 47 chr11 115102442 115102483 -6741373 - B4A SINE B4 -180 112 3 1 1463 443 130 25 38 chr11 115102483 115102563 -6741293 - B3A SINE B2 -117 81 3 1 1463 309 243 71 66 chr11 115102568 115102703 -6741153 - B1F SINE Alu -2 148 9 1 1463 512 246 37 7 chr11 115112776 115112911 -6730945 - ID_B1 SINE B4 0 224 86 1 1463 767 202 76 71 chr11 115113091 115113288 -6730568 - B3A SINE B2 0 198 1 1 1463 349 266 53 11 chr11 115113303 115113398 -6730458 - PB1D10 SINE Alu 0 117 19 1 1463 249 238 58 35 chr11 115114761 115114848 -6729008 - MIR3 SINE MIR -38 170 82 1 1463 498 33 0 0 chr11 115115997 115116057 -6727799 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1463 522 220 0 52 chr11 115116057 115116172 -6727684 - B1F2 SINE Alu -40 109 1 1 1463 287 233 15 147 chr11 115116172 115116193 -6727663 - MT2B LTR ERVL -338 263 146 1 1463 357 24 0 0 chr11 115117242 115117284 -6726572 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1463 471 254 19 101 chr11 115118177 115118335 -6725521 - B1F2 SINE Alu 0 149 5 1 1463 294 269 42 101 chr11 115118884 115119045 -6724811 - MIR SINE MIR -93 183 31 1 1463 183 220 40 0 chr11 115119834 115119884 -6723972 - MER5B DNA MER1_type -25 153 102 1 1463 359 272 86 33 chr11 115119896 115120048 -6723808 + MER5A DNA MER1_type 24 183 -6 1 1463 662 278 0 14 chr11 115120425 115120571 -6723285 + B1F2 SINE Alu 1 144 -5 1 1463 734 256 14 72 chr11 115120582 115120860 -6722996 + L1MC5 LINE L1 7511 7772 -189 1 1463 1417 169 71 13 chr11 115121217 115121528 -6722328 + Lx3C LINE L1 6646 6974 -2 1 1463 263 212 76 0 chr11 115122790 115122856 -6721000 + MIRc SINE MIR 25 95 -173 1 1463 439 189 309 7 chr11 115122931 115123070 -6720786 - B3A SINE B2 -17 181 1 1 1463 184 216 0 0 chr11 115124096 115124133 -6719723 - L2b LINE L2 -82 3293 3257 1 1463 306 0 0 0 chr11 115124696 115124730 -6719126 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1463 263 317 0 12 chr11 115124832 115124915 -6718941 - B4A SINE B4 -209 83 2 1 1463 248 256 34 169 chr11 115124916 115124991 -6718865 + Charlie5 DNA MER1_type 2443 2523 -101 1 1463 933 136 0 45 chr11 115124991 115125145 -6718711 + B1_Mus2 SINE Alu 1 147 0 1 1463 248 256 34 169 chr11 115125145 115125191 -6718665 + Charlie5 DNA MER1_type 2524 2539 -85 1 1463 650 199 70 49 chr11 115125191 115125204 -6718652 - B1_Mur1 SINE Alu -1 148 139 1 1463 233 57 0 28 chr11 115125204 115125240 -6718616 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1463 650 199 70 49 chr11 115125240 115125369 -6718487 - B1_Mur1 SINE Alu -11 138 3 1 1463 248 256 34 169 chr11 115125369 115125453 -6718403 + Charlie5 DNA MER1_type 2540 2620 -4 1 1463 41 0 0 0 chr11 115128460 115128501 -6715355 + GC_rich Low_complexity Low_complexity 1 41 0 1 1463 23 33 0 0 chr11 115128586 115128616 -6715240 + GC_rich Low_complexity Low_complexity 1 30 0 1 1463 278 234 182 17 chr11 115128722 115128848 -6715008 + MIRb SINE MIR 4 152 -124 1 1463 985 134 21 0 chr11 115130224 115130366 -6713490 - B1_Mus2 SINE Alu 0 147 3 1 1463 180 0 0 0 chr11 115131429 115131449 -6712407 + (AGGGGG)n Simple_repeat Simple_repeat 2 21 0 1 1463 261 279 148 35 chr11 115131756 115131871 -6711985 + MT2B LTR ERVL 154 281 -320 1 1463 534 200 9 0 chr11 115131784 115131889 -6711967 + B1_Mur1 SINE Alu 39 144 -5 1 1463 218 349 87 8 chr11 115134150 115134277 -6709579 + MIRc SINE MIR 12 148 -120 1 1463 252 250 15 0 chr11 115135347 115135415 -6708441 + ID4_ SINE ID 2 70 -13 2 1463 592 273 60 33 chr11 115135447 115135629 -6708227 - B3A SINE B2 -5 193 7 2 1463 655 192 84 68 chr11 115136709 115136899 -6706957 - B3A SINE B2 -1 197 5 2 1463 265 284 59 0 chr11 115138923 115139025 -6704831 + MER96B DNA hAT 56 163 -254 2 1463 406 281 63 56 chr11 115139067 115139210 -6704646 - RSINE1 SINE B4 -13 152 9 2 1463 219 69 0 0 chr11 115139476 115139505 -6704351 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 2 1463 339 146 24 2 chr11 115139859 115139935 -6703921 + B1_Mus1 SINE Alu 34 118 -2 2 1463 1003 148 7 0 chr11 115140118 115140267 -6703589 - B1_Mur4 SINE Alu 0 150 1 2 1463 549 217 143 13 chr11 115140383 115140537 -6703319 - B2_Mm2 SINE B2 -18 177 4 2 1463 1006 140 0 26 chr11 115140561 115140715 -6703141 - B1_Mur4 SINE Alu 0 150 1 2 1463 318 216 121 33 chr11 115140765 115140856 -6703000 - B3A SINE B2 -89 109 11 2 1463 1049 249 180 31 chr11 115140951 115141211 -6702645 - Lx8 LINE L1 0 7473 7156 2 1463 1992 107 181 0 chr11 115141211 115141521 -6702335 + ORR1B2 LTR MaLR 1 366 -1 2 1463 1049 249 180 31 chr11 115141521 115141704 -6702152 - Lx8 LINE L1 -318 7155 6964 2 1463 361 235 88 0 chr11 115141716 115141818 -6702038 + MER58B DNA MER1_type 231 341 0 2 1463 207 375 40 40 chr11 115141818 115141918 -6701938 + L2b LINE L2 3251 3350 -25 2 1463 192 200 0 0 chr11 115141926 115141966 -6701890 + T-rich Low_complexity Low_complexity 1 40 0 2 1463 656 153 0 48 chr11 115141984 115142108 -6701748 + B1_Mus2 SINE Alu 30 147 0 2 1463 189 319 219 5 chr11 115142207 115142399 -6701457 + MIR SINE MIR 1 233 -29 2 1463 661 189 15 29 chr11 115142439 115142575 -6701281 + URR1A DNA MER1_type 1 134 -92 2 1463 315 311 18 72 chr11 115142599 115142710 -6701146 + B1_Mur4 SINE Alu 43 147 -3 2 1463 398 301 132 0 chr11 115143604 115143740 -6700116 + MER20 DNA MER1_type 6 159 -60 2 1463 337 303 0 22 chr11 115144034 115144169 -6699687 + C-rich Low_complexity Low_complexity 5 136 0 2 1463 425 297 150 40 chr11 115145201 115145401 -6698455 - MIRb SINE MIR -45 223 2 2 1463 244 358 21 43 chr11 115145727 115145867 -6697989 - MamGypLTR2c LTR Gypsy -476 592 456 2 1463 193 286 71 0 chr11 115145896 115145952 -6697904 + MIR3 SINE MIR 113 172 -36 2 1463 468 0 0 0 chr11 115146920 115146972 -6696884 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1463 490 275 6 59 chr11 115146972 115147137 -6696719 - B3A SINE B2 -36 162 6 2 1463 230 302 47 18 chr11 115147138 115147293 -6696563 - MIR SINE MIR -86 190 41 2 1463 198 0 0 0 chr11 115147733 115147755 -6696101 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 1463 324 0 0 0 chr11 115148476 115148512 -6695344 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1463 459 275 0 29 chr11 115148518 115148623 -6695233 - RSINE1 SINE B4 -11 154 53 2 1463 2696 85 42 13 chr11 115148828 115149210 -6694646 + ORR1B1 LTR MaLR 2 394 0 2 1463 552 212 99 93 chr11 115149435 115149617 -6694239 - B3A SINE B2 -6 192 10 2 1463 542 248 0 41 chr11 115149749 115149871 -6693985 - PB1D10 SINE Alu 0 117 1 2 1463 372 97 0 25 chr11 115149957 115150068 -6693788 - B2_Mm2 SINE B2 -4 191 47 2 1463 1210 76 56 39 chr11 115150099 115150277 -6693579 - B2_Mm2 SINE B2 -13 182 2 2 1463 1198 29 0 0 chr11 115150740 115150877 -6692979 + B1_Mm SINE Alu 1 137 -10 2 1463 576 0 0 0 chr11 115150877 115150941 -6692915 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 2 1463 770 141 110 7 chr11 115151151 115151287 -6692569 - B1_Mur4 SINE Alu 0 150 1 2 1463 656 191 122 0 chr11 115151622 115151753 -6692103 - B1_Mus1 SINE Alu 0 148 2 2 1463 550 337 30 50 chr11 115152086 115152348 -6691508 - B4A SINE B4 -7 285 29 2 1463 222 37 0 0 chr11 115152638 115152665 -6691191 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1463 252 0 0 0 chr11 115154659 115154687 -6689169 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 2 1463 705 194 0 0 chr11 115155185 115155355 -6688501 + (TG)n Simple_repeat Simple_repeat 2 171 0 2 1463 1407 209 28 21 chr11 115155361 115155688 -6688168 + ORR1B2 LTR MaLR 4 332 -35 2 1463 619 244 149 35 chr11 115155812 115156067 -6687789 + RMER20B LTR ERVK 130 413 -214 2 1463 395 19 19 0 chr11 115156084 115156136 -6687720 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1463 569 211 30 30 chr11 115156171 115156303 -6687553 + B3 SINE B2 1 132 -84 2 1463 194 0 0 37 chr11 115156306 115156333 -6687523 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2 1463 1251 48 0 0 chr11 115156333 115156480 -6687376 - B1_Mus1 SINE Alu 0 148 2 2 1463 261 290 48 29 chr11 115156480 115156583 -6687273 + B3 SINE B2 111 215 -1 2 1463 436 303 25 56 chr11 115156590 115156678 -6687178 + RSINE1 SINE B4 10 100 -65 2 1463 1320 96 27 5 chr11 115156678 115156866 -6686990 + B2_Mm2 SINE B2 2 193 -2 2 1463 436 303 25 56 chr11 115156866 115156938 -6686918 + RSINE1 SINE B4 101 165 0 2 1463 396 103 0 0 chr11 115157678 115157736 -6686120 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1463 276 200 108 0 chr11 115159843 115159908 -6683948 - B1F1 SINE Alu -49 100 29 2 1463 224 337 87 0 chr11 115159989 115160081 -6683775 - RSINE1 SINE B4 -10 155 56 2 1463 864 198 93 63 chr11 115160423 115160628 -6683228 + B3 SINE B2 1 211 -5 2 1463 261 269 49 37 chr11 115161255 115161336 -6682520 - ID2 SINE ID 0 83 2 2 1463 571 226 0 0 chr11 115161336 115161442 -6682414 - PB1D10 SINE Alu -2 115 10 2 1463 242 349 68 23 chr11 115161341 115161473 -6682383 - B4A SINE B4 -90 202 65 2 1463 332 203 0 0 chr11 115161473 115161542 -6682314 + L1M5 LINE L1 5607 5675 -769 2 1463 1133 105 40 6 chr11 115161543 115161716 -6682140 + B2_Mm2 SINE B2 2 180 -15 2 1463 1158 101 0 0 chr11 115161716 115161934 -6681922 + (GAAA)n Simple_repeat Simple_repeat 1 218 0 2 1463 1005 106 25 0 chr11 115161934 115162094 -6681762 + B2_Mm2 SINE B2 28 191 -4 2 1463 219 152 0 0 chr11 115162115 115162161 -6681695 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1463 796 278 0 53 chr11 115162191 115162381 -6681475 - B3A SINE B2 -16 182 3 2 1463 568 250 49 65 chr11 115162415 115162556 -6681300 + B3A SINE B2 15 150 -48 2 1463 432 0 0 0 chr11 115162556 115162604 -6681252 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1463 378 74 0 0 chr11 115162604 115162657 -6681199 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1463 568 250 49 65 chr11 115162657 115162698 -6681158 + B3A SINE B2 151 194 -4 2 1463 1237 98 5 71 chr11 115162719 115162917 -6680939 - B2_Mm2 SINE B2 -9 186 2 2 1463 287 303 0 0 chr11 115162951 115163017 -6680839 + ID4_ SINE ID 2 67 -16 2 1463 180 0 0 0 chr11 115163079 115163099 -6680757 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1463 869 161 22 0 chr11 115163104 115163241 -6680615 + B1_Mus1 SINE Alu 2 141 -7 2 1463 1633 221 20 9 chr11 115164055 115164402 -6679454 + MTD LTR MaLR 69 419 0 2 1463 328 237 0 26 chr11 115164498 115164576 -6679280 - ID2 SINE ID -5 78 3 2 1463 1713 31 0 0 chr11 115164947 115165140 -6678716 + B2_Mm1a SINE B2 1 193 0 2 1463 723 145 87 16 chr11 115165580 115165706 -6678150 - B1_Mur4 SINE Alu -15 135 1 2 1463 351 0 0 0 chr11 115165844 115165883 -6677973 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1463 320 321 107 43 chr11 115165892 115166032 -6677824 - MLT1J2 LTR MaLR 0 448 300 2 1463 288 302 99 13 chr11 115166119 115166270 -6677586 - RMER15 LTR ERVL -65 510 347 2 1463 468 287 99 27 chr11 115166638 115166953 -6676903 + L1MB1 LINE L1 5507 5880 -309 2 1463 647 200 0 1 chr11 115166975 115167102 -6676754 + B1_Mur2 SINE Alu 11 136 -13 2 1463 699 46 0 0 chr11 115167172 115167259 -6676597 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 2 1463 367 247 113 6 chr11 115167274 115167395 -6676461 + B3A SINE B2 34 155 -40 2 1463 441 50 0 0 chr11 115167395 115167455 -6676401 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1463 242 340 57 25 chr11 115167455 115167490 -6676366 + B2_Mm2 SINE B2 156 195 0 2 1463 223 371 0 0 chr11 115167743 115167813 -6676043 + L2b LINE L2 3303 3372 -3 2 1463 776 138 131 0 chr11 115167878 115168008 -6675848 + B1_Mur3 SINE Alu 1 147 -2 2 1463 347 89 0 35 chr11 115169189 115169247 -6674609 - HAL1-3A_ME LINE L1 -830 2028 1973 2 1463 338 169 29 29 chr11 115169249 115169420 -6674436 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 1463 297 0 0 0 chr11 115170209 115170242 -6673614 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1463 440 170 46 23 chr11 115170442 115170617 -6673239 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1463 525 127 29 40 chr11 115170643 115170816 -6673040 + (CA)n Simple_repeat Simple_repeat 1 171 0 2 1463 407 291 62 23 chr11 115171244 115171374 -6672482 - RSINE1 SINE B4 -28 137 3 2 1463 315 287 68 19 chr11 115171376 115171479 -6672377 - PB1D10 SINE Alu 0 117 10 2 1463 260 345 66 14 chr11 115171557 115171698 -6672158 + MIRc SINE MIR 16 166 -102 2 1463 430 200 63 87 chr11 115172134 115172260 -6671596 + B1F SINE Alu 24 146 -3 2 1463 360 0 0 0 chr11 115172260 115172300 -6671556 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1463 485 104 46 53 chr11 115172297 115172449 -6671407 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 2 1463 387 0 0 0 chr11 115172766 115172809 -6671047 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1463 336 167 136 0 chr11 115172841 115172907 -6670949 - B3 SINE B2 -141 75 1 2 1463 766 229 14 0 chr11 115173006 115173150 -6670706 + B1_Mur2 SINE Alu 1 146 -3 2 1463 1190 184 34 10 chr11 115174134 115174343 -6669513 - B3 SINE B2 -2 214 1 2 1463 324 0 0 0 chr11 115174726 115174762 -6669094 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1463 775 222 21 0 chr11 115174766 115174910 -6668946 - RSINE1 SINE B4 -17 148 2 3 1463 906 141 12 8 chr11 115174989 115175239 -6668617 + GA-rich Low_complexity Low_complexity 1 251 0 3 1463 955 165 8 0 chr11 115175253 115175492 -6668364 + GA-rich Low_complexity Low_complexity 1 241 0 3 1463 227 283 0 21 chr11 115175871 115175973 -6667883 + MIRc SINE MIR 104 201 -7 3 1463 411 56 0 0 chr11 115177190 115177244 -6666612 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1463 488 158 466 0 chr11 115178853 115178999 -6664857 + ID_B1 SINE B4 1 214 -10 3 1463 604 126 50 0 chr11 115180598 115180717 -6663139 + GA-rich Low_complexity Low_complexity 6 130 0 3 1463 682 92 56 112 chr11 115180780 115180940 -6662916 + URR1A DNA MER1_type 75 225 -1 3 1463 180 0 0 0 chr11 115181027 115181047 -6662809 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1463 636 74 0 0 chr11 115181047 115181141 -6662715 + (GA)n Simple_repeat Simple_repeat 1 95 0 3 1463 180 111 0 0 chr11 115185470 115185497 -6658359 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 3 1463 459 225 17 6 chr11 115185541 115185715 -6658141 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 3 1463 259 239 165 33 chr11 115186482 115186573 -6657283 - B1F SINE Alu -46 103 1 3 1463 318 269 0 0 chr11 115186938 115187005 -6656851 + ID_B1 SINE B4 123 189 -35 3 1463 481 221 97 0 chr11 115186993 115187106 -6656750 + B1_Mur4 SINE Alu 26 149 -1 3 1463 1167 64 6 0 chr11 115187308 115187464 -6656392 + B2_Mm2 SINE B2 2 158 -37 3 1463 387 0 0 0 chr11 115187465 115187508 -6656348 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1463 413 289 76 16 chr11 115188695 115188860 -6654996 - MIR SINE MIR -29 233 65 3 1463 577 212 115 14 chr11 115189573 115189712 -6654144 - RSINE1 SINE B4 0 165 13 3 1463 369 193 120 0 chr11 115189715 115189824 -6654032 - B4 SINE B4 -60 232 91 3 1463 272 276 21 65 chr11 115190025 115190118 -6653738 - B4A SINE B4 -197 95 7 3 1463 197 167 0 45 chr11 115190689 115190733 -6653123 - L3 LINE CR1 -2043 2446 2405 3 1463 416 348 108 46 chr11 115191827 115192152 -6651704 + MER2 DNA MER2_type 1 345 0 3 1463 252 0 0 0 chr11 115194043 115194071 -6649785 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1463 235 308 62 70 chr11 115194142 115194271 -6649585 - B4 SINE B4 -102 190 63 3 1463 490 219 193 9 chr11 115194299 115194428 -6649428 - B3 SINE B2 -44 149 1 3 1463 318 294 100 29 chr11 115194440 115194580 -6649276 - B4A SINE B4 -142 150 1 3 1463 543 278 10 29 chr11 115194631 115194835 -6649021 - L1MA4 LINE L1 -56 6244 6045 3 1463 566 245 36 0 chr11 115195120 115195259 -6648597 - ID_B1 SINE B4 0 224 81 3 1463 31 0 0 0 chr11 115195260 115195291 -6648565 + AT_rich Low_complexity Low_complexity 1 31 0 3 1463 630 189 158 7 chr11 115195294 115195433 -6648423 - RSINE1 SINE B4 -3 162 3 3 1463 220 261 0 0 chr11 115197168 115197214 -6646642 + ID4 SINE ID 2 47 -36 3 1463 1413 160 0 26 chr11 115198218 115198449 -6645407 + URR1B DNA MER1_type 1 225 0 3 1463 350 218 54 5 chr11 115199031 115199137 -6644719 + PB1D10 SINE Alu 24 130 -19 3 1463 283 239 0 15 chr11 115199650 115199718 -6644138 - MER117 DNA MER1_type -26 171 105 3 1463 1382 72 0 85 chr11 115199786 115199998 -6643858 + B2_Mm2 SINE B2 2 195 0 3 1463 251 284 24 24 chr11 115200113 115200196 -6643660 - MER117 DNA MER1_type -50 147 65 3 1463 426 85 0 0 chr11 115201623 115201682 -6642174 + (TCC)n Simple_repeat Simple_repeat 3 61 0 3 1463 357 268 92 20 chr11 115201684 115201837 -6642019 - MIRm SINE MIR -93 183 17 3 1463 197 83 28 0 chr11 115201838 115201874 -6641982 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1463 675 0 0 0 chr11 115202404 115202479 -6641377 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1463 384 22 0 0 chr11 115202479 115202523 -6641333 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1463 691 277 39 58 chr11 115202551 115202758 -6641098 + B4 SINE B4 2 204 -88 3 1463 501 255 47 82 chr11 115202742 115202913 -6640943 + B4 SINE B4 114 278 -14 3 1463 351 0 0 0 chr11 115202916 115202955 -6640901 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1463 411 38 0 0 chr11 115203482 115203535 -6640321 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1463 337 246 14 0 chr11 115203535 115203604 -6640252 - ID4_ SINE ID -13 70 1 3 1463 553 272 13 26 chr11 115203617 115203746 -6640110 + B4A SINE B4 142 269 -23 3 1463 234 91 0 0 chr11 115203746 115203779 -6640077 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1463 553 272 13 26 chr11 115203779 115203800 -6640056 + B4A SINE B4 270 290 -2 3 1463 351 234 39 0 chr11 115203821 115203898 -6639958 - PB1D10 SINE Alu -20 97 18 3 1463 426 265 92 0 chr11 115204012 115204110 -6639746 - PB1D10 SINE Alu -9 108 2 3 1463 642 219 98 78 chr11 115204156 115204349 -6639507 - B3A SINE B2 -1 197 1 3 1463 336 161 0 0 chr11 115204349 115204411 -6639445 + CT-rich Low_complexity Low_complexity 3 64 0 3 1463 23 0 0 0 chr11 115204434 115204457 -6639399 + AT_rich Low_complexity Low_complexity 1 23 0 3 1463 892 165 67 62 chr11 115204498 115204692 -6639164 - B2_Mm2 SINE B2 0 195 1 3 1463 2059 122 91 1 chr11 115204692 115205044 -6638812 - ORR1B1 LTR MaLR -13 381 1 3 1463 180 296 56 0 chr11 115206948 115207002 -6636854 - MIRb SINE MIR -173 95 39 3 1463 504 0 0 0 chr11 115207529 115207585 -6636271 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1463 252 0 0 0 chr11 115208847 115208875 -6634981 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1463 1503 73 21 0 chr11 115210930 115211121 -6632735 - B2_Mm2 SINE B2 0 195 1 3 1463 240 35 0 0 chr11 115211480 115211509 -6632347 + (CAGCC)n Simple_repeat Simple_repeat 5 33 0 3 1464 293 0 27 0 chr11 115213299 115213336 -6630520 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 3 1464 670 118 126 0 chr11 115213395 115213514 -6630342 - B1_Mus2 SINE Alu 0 147 14 3 1464 227 318 34 11 chr11 115214255 115214344 -6629512 - MIR SINE MIR -125 137 47 3 1464 194 362 0 36 chr11 115214458 115214541 -6629315 + L2b LINE L2 3238 3317 -58 3 1464 765 279 150 69 chr11 115214672 115215019 -6628837 + MTE2a LTR MaLR 5 379 0 3 1464 444 318 87 0 chr11 115215212 115215294 -6628562 + MER33 DNA MER1_type 11 93 -231 3 1464 447 52 0 0 chr11 115215294 115215352 -6628504 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1464 444 318 87 0 chr11 115215352 115215442 -6628414 + MER33 DNA MER1_type 94 197 -127 3 1464 274 274 233 10 chr11 115215454 115215557 -6628299 - RSINE1 SINE B4 -37 128 3 3 1464 270 0 0 0 chr11 115216088 115216118 -6627738 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 3 1464 706 282 107 15 chr11 115217301 115217506 -6626350 - ID_B1 SINE B4 0 224 1 3 1464 348 162 0 0 chr11 115218211 115218279 -6625577 + (CCCCAG)n Simple_repeat Simple_repeat 1 68 0 3 1464 288 225 42 0 chr11 115218590 115218661 -6625195 - MIR3 SINE MIR -34 174 101 3 1464 476 302 62 43 chr11 115219194 115219405 -6624451 + MER33 DNA MER1_type 4 218 -106 3 1464 936 218 103 5 chr11 115219417 115219620 -6624236 - ID_B1 SINE B4 -1 223 1 3 1464 413 233 0 0 chr11 115219715 115219801 -6624055 + B3 SINE B2 45 130 -86 3 1464 30 0 0 0 chr11 115219838 115219868 -6623988 + AT_rich Low_complexity Low_complexity 1 30 0 3 1464 546 220 16 25 chr11 115222166 115222287 -6621569 + B1_Mur2 SINE Alu 10 129 -20 3 1464 874 228 3 29 chr11 115222294 115222489 -6621367 + B3 SINE B2 27 216 0 3 1464 27 0 0 26 chr11 115222489 115222514 -6621342 + AT_rich Low_complexity Low_complexity 1 25 0 3 1464 1113 95 0 0 chr11 115222514 115222661 -6621195 - B1_Mus1 SINE Alu 0 148 2 3 1464 27 0 0 26 chr11 115222661 115222673 -6621183 + AT_rich Low_complexity Low_complexity 1 12 0 3 1464 671 244 122 20 chr11 115223742 115223939 -6619917 + ID_B1 SINE B4 1 217 -7 3 1464 324 0 0 0 chr11 115223941 115223977 -6619879 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1464 513 265 0 0 chr11 115224081 115224198 -6619658 + RSINE1 SINE B4 3 119 -46 3 1464 222 91 0 0 chr11 115224225 115224258 -6619598 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1464 914 171 0 0 chr11 115224301 115224441 -6619415 + B1_Mur2 SINE Alu 2 141 -8 3 1464 591 189 317 0 chr11 115224553 115224717 -6619139 + B3 SINE B2 1 216 0 3 1464 1802 118 44 50 chr11 115224821 115224901 -6618955 + MTC LTR MaLR 1 80 -341 3 1464 903 134 0 0 chr11 115224901 115225035 -6618821 + B1_Mus1 SINE Alu 1 134 -14 3 1464 225 0 0 0 chr11 115225035 115225060 -6618796 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 3 1464 1802 118 44 50 chr11 115225060 115225299 -6618557 + MTC LTR MaLR 81 318 -103 3 1464 768 213 50 65 chr11 115226155 115226356 -6617500 - B3A SINE B2 0 198 1 3 1464 635 233 39 0 chr11 115227034 115227163 -6616693 + RSINE1 SINE B4 32 165 0 3 1464 200 238 0 16 chr11 115227211 115227275 -6616581 + GA-rich Low_complexity Low_complexity 2 64 0 3 1464 1227 68 0 0 chr11 115229357 115229519 -6614337 + (TTTTC)n Simple_repeat Simple_repeat 2 163 0 3 1464 374 70 35 0 chr11 115229519 115229576 -6614280 + (TCTCC)n Simple_repeat Simple_repeat 2 60 0 3 1464 186 133 0 0 chr11 115229571 115229601 -6614255 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 3 1464 460 301 142 0 chr11 115229881 115230064 -6613792 - ID_B1 SINE B4 -2 222 14 3 1464 297 274 116 0 chr11 115230096 115230191 -6613665 + ID_B1 SINE B4 94 199 -25 3 1464 819 224 0 0 chr11 115230622 115230769 -6613087 + B1_Mur1 SINE Alu 1 147 -2 3 1464 622 235 0 8 chr11 115230952 115231085 -6612771 - ID_B1 SINE B4 -1 223 92 3 1464 289 298 21 21 chr11 115231001 115231097 -6612759 - PB1D10 SINE Alu -21 96 1 3 1464 381 316 200 0 chr11 115231100 115231331 -6612525 + L1ME1 LINE L1 5902 6178 -1 3 1464 307 253 13 13 chr11 115231347 115231423 -6612433 + ID4_ SINE ID 6 81 -2 4 1464 205 316 0 0 chr11 115231739 115231796 -6612060 - L2a LINE L2 -2 3424 3368 4 1464 187 292 21 82 chr11 115232471 115232568 -6611288 - L2a LINE L2 -544 2875 2785 4 1464 773 249 42 51 chr11 115232735 115232972 -6610884 - MLT1G LTR MaLR -44 547 313 4 1464 810 204 77 18 chr11 115232997 115233167 -6610689 + B3A SINE B2 1 180 -18 4 1464 356 231 39 0 chr11 115233236 115233314 -6610542 - ID_B1 SINE B4 -64 160 80 4 1464 666 153 0 26 chr11 115233348 115233462 -6610394 + B1_Mur1 SINE Alu 7 117 -32 4 1464 336 24 0 0 chr11 115233462 115233503 -6610353 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1464 328 192 123 0 chr11 115233854 115233927 -6609929 - B3 SINE B2 -133 83 2 4 1464 513 235 59 29 chr11 115233947 115234083 -6609773 - ID_B1 SINE B4 0 224 85 4 1464 1238 64 128 0 chr11 115234157 115234329 -6609527 - B2_Mm2 SINE B2 0 195 2 4 1464 475 193 263 0 chr11 115234332 115234446 -6609410 - B1_Mus1 SINE Alu 0 148 5 4 1464 255 152 0 0 chr11 115234472 115234518 -6609338 + (TATG)n Simple_repeat Simple_repeat 1 46 0 4 1464 180 77 0 0 chr11 115234599 115234625 -6609231 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 4 1464 696 265 96 10 chr11 115234644 115234842 -6609014 + ID_B1 SINE B4 5 219 -5 4 1464 734 254 60 11 chr11 115236705 115236888 -6606968 + B3A SINE B2 1 192 -6 4 1464 312 27 0 0 chr11 115237107 115237144 -6606712 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 4 1464 287 310 60 26 chr11 115237624 115237740 -6606116 + L2a LINE L2 3032 3151 -275 4 1464 933 41 0 0 chr11 115237860 115237982 -6605874 + (TCC)n Simple_repeat Simple_repeat 1 122 0 4 1464 644 253 7 26 chr11 115238003 115238157 -6605699 - B3 SINE B2 -65 151 1 4 1464 447 366 19 0 chr11 115238200 115238361 -6605495 + MLT1D LTR MaLR 9 172 -333 4 1464 561 300 6 30 chr11 115238370 115238535 -6605321 + RSINE1 SINE B4 3 163 -2 4 1464 704 169 74 81 chr11 115238790 115238938 -6604918 + B1_Mus2 SINE Alu 1 147 0 4 1464 1206 68 0 0 chr11 115239129 115239276 -6604580 + B1_Mus2 SINE Alu 1 147 0 4 1464 701 211 72 67 chr11 115239286 115239479 -6604377 - B3A SINE B2 -3 195 2 4 1464 420 255 0 39 chr11 115239499 115239601 -6604255 - RSINE1 SINE B4 0 165 68 4 1464 647 259 7 0 chr11 115239608 115239755 -6604101 + B1_Mur3 SINE Alu 2 149 0 4 1464 269 259 0 0 chr11 115239784 115239842 -6604014 - RSINE1 SINE B4 -106 59 2 4 1464 241 289 99 11 chr11 115240180 115240271 -6603585 + MTEa LTR MaLR 272 370 -9 4 1464 186 246 0 0 chr11 115240473 115240534 -6603322 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1464 657 231 0 0 chr11 115240570 115240743 -6603113 + (CATA)n Simple_repeat Simple_repeat 4 176 0 4 1464 267 253 0 0 chr11 115240754 115240833 -6603023 + (CATA)n Simple_repeat Simple_repeat 4 82 0 4 1464 618 256 0 0 chr11 115240821 115241001 -6602855 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1464 371 274 62 32 chr11 115241105 115241348 -6602508 - L1M5 LINE L1 -836 5464 5221 4 1464 1220 61 0 0 chr11 115241373 115241520 -6602336 + B1_Mus1 SINE Alu 2 148 0 4 1464 677 234 118 15 chr11 115241818 115242013 -6601843 - B3 SINE B2 0 216 2 4 1464 1398 81 38 0 chr11 115242023 115242209 -6601647 - B2_Mm2 SINE B2 0 195 3 4 1464 611 253 139 49 chr11 115242254 115242520 -6601336 - B4 SINE B4 -2 290 1 4 1464 331 306 22 36 chr11 115242543 115242682 -6601174 - B1F SINE Alu -1 148 12 4 1464 551 264 42 14 chr11 115242686 115242828 -6601028 - B3A SINE B2 -13 185 40 4 1464 2079 121 28 66 chr11 115247102 115247528 -6596328 - RMER17C LTR ERVK 0 410 1 4 1464 371 250 62 44 chr11 115248056 115248169 -6595687 + ID_B1 SINE B4 109 223 -1 4 1464 963 256 23 5 chr11 115248173 115248389 -6595467 + ID_B1 SINE B4 5 224 0 4 1464 1355 72 44 0 chr11 115248393 115248574 -6595282 + B2_Mm2 SINE B2 1 189 -6 4 1464 180 0 0 0 chr11 115249255 115249275 -6594581 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4 1464 1299 91 0 43 chr11 115249276 115249460 -6594396 - B2_Mm2 SINE B2 -18 177 2 4 1464 984 233 42 0 chr11 115249493 115249614 -6594242 - B3 SINE B2 -15 201 81 4 1464 582 15 0 0 chr11 115249614 115249681 -6594175 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1464 984 233 42 0 chr11 115249681 115249752 -6594104 - B3 SINE B2 -136 80 2 4 1464 915 159 14 0 chr11 115249786 115249931 -6593925 - B1_Mus1 SINE Alu -1 147 1 4 1464 388 252 38 19 chr11 115249931 115250036 -6593820 - PB1D7 SINE Alu -9 111 5 4 1464 328 255 118 0 chr11 115250043 115250145 -6593711 - PB1 SINE Alu -2 125 12 4 1464 723 264 71 9 chr11 115250170 115250380 -6593476 - ID_B1 SINE B4 0 224 2 4 1464 531 205 33 67 chr11 115250423 115250440 -6593416 - PB1D10 SINE Alu 0 117 106 4 1464 308 24 24 0 chr11 115250440 115250481 -6593375 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 4 1464 531 205 33 67 chr11 115250481 115250583 -6593273 - PB1D10 SINE Alu -12 105 2 4 1464 1327 68 44 17 chr11 115250641 115250821 -6593035 + B2_Mm2 SINE B2 1 185 -10 4 1464 453 19 0 0 chr11 115250991 115251045 -6592811 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1464 253 273 0 18 chr11 115251061 115251117 -6592739 - RSINE1 SINE B4 -108 57 3 4 1464 450 238 172 16 chr11 115251119 115251247 -6592609 - B3A SINE B2 -5 193 46 4 1464 721 167 0 8 chr11 115251274 115251395 -6592461 - PB1D9 SINE Alu 0 120 1 4 1464 412 306 0 9 chr11 115251468 115251577 -6592279 + PB1D10 SINE Alu 10 117 0 4 1464 1351 103 0 15 chr11 115252403 115252440 -6591416 - B2_Mm2 SINE B2 0 195 159 4 1464 387 0 0 0 chr11 115252440 115252483 -6591373 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 1464 1351 103 0 15 chr11 115252483 115252642 -6591214 - B2_Mm2 SINE B2 -37 158 2 4 1464 585 205 0 0 chr11 115252645 115252757 -6591099 - PB1D9 SINE Alu 0 120 9 4 1464 269 294 11 23 chr11 115252685 115252772 -6591084 - B4 SINE B4 -127 165 80 4 1464 815 199 88 6 chr11 115252780 115252962 -6590894 - B3A SINE B2 -1 197 1 4 1464 738 285 108 15 chr11 115253151 115253411 -6590445 + B4A SINE B4 4 287 -5 4 1464 423 278 52 0 chr11 115253686 115253801 -6590055 + B3A SINE B2 9 129 -69 4 1464 390 42 0 0 chr11 115253805 115253853 -6590003 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1464 189 94 0 0 chr11 115255919 115255951 -6587905 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1464 209 137 39 0 chr11 115256591 115256642 -6587214 + T-rich Low_complexity Low_complexity 1 53 0 4 1464 1064 83 14 0 chr11 115256642 115256787 -6587069 - B1_Mus1 SINE Alu 0 148 2 4 1464 896 264 37 28 chr11 115257833 115258047 -6585809 - ID_B1 SINE B4 -8 216 1 4 1464 877 169 6 11 chr11 115258048 115258228 -6585628 + CT-rich Low_complexity Low_complexity 2 180 0 4 1464 534 212 37 29 chr11 115258228 115258247 -6585609 - B1_Mm SINE Alu -6 141 123 4 1464 1094 197 39 10 chr11 115258247 115258452 -6585404 + B3 SINE B2 1 211 -5 4 1464 534 212 37 29 chr11 115258452 115258568 -6585288 - B1_Mm SINE Alu -25 122 6 4 1464 351 244 0 75 chr11 115258489 115258582 -6585274 - MT2B LTR ERVL -361 240 155 4 1464 25 51 0 0 chr11 115258716 115258755 -6585101 + AT_rich Low_complexity Low_complexity 1 39 0 4 1464 284 330 17 35 chr11 115258790 115258906 -6584950 + RSINE1 SINE B4 47 160 -5 4 1464 783 173 66 22 chr11 115259119 115259255 -6584601 + B1_Mur3 SINE Alu 2 143 -6 4 1464 914 271 0 14 chr11 115259962 115260179 -6583677 - B3 SINE B2 -2 214 1 4 1464 235 320 106 44 chr11 115260187 115260367 -6583489 - B2_Mm2 SINE B2 -3 192 2 4 1464 490 343 14 0 chr11 115260226 115260369 -6583487 - RSINE1 SINE B4 -20 145 1 4 1464 735 191 2 0 chr11 115260775 115261227 -6582629 + (CA)n Simple_repeat Simple_repeat 1 452 0 4 1464 258 32 0 0 chr11 115261243 115261274 -6582582 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1464 201 318 91 0 chr11 115261514 115261663 -6582193 - MIRc SINE MIR -16 252 85 4 1464 396 0 0 0 chr11 115261724 115261768 -6582088 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1464 541 238 98 15 chr11 115262125 115262257 -6581599 - B1F1 SINE Alu -2 147 5 4 1464 1416 74 16 16 chr11 115263148 115263341 -6580515 - B2_Mm2 SINE B2 0 195 3 4 1464 779 200 20 7 chr11 115263590 115263736 -6580120 + B1_Mur3 SINE Alu 2 149 0 4 1464 326 219 258 50 chr11 115263899 115264019 -6579837 + ID_B1 SINE B4 77 221 -3 4 1464 385 240 64 46 chr11 115263915 115264024 -6579832 + PB1D10 SINE Alu 6 116 -1 4 1464 384 252 168 30 chr11 115264024 115264155 -6579701 + B1_Mur1 SINE Alu 1 149 0 4 1464 203 184 0 0 chr11 115264392 115264430 -6579426 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 4 1464 610 136 88 26 chr11 115264452 115264565 -6579291 - B1_Mm SINE Alu -5 142 23 4 1464 240 35 0 0 chr11 115264572 115264601 -6579255 + (TATG)n Simple_repeat Simple_repeat 3 31 0 4 1464 973 100 42 21 chr11 115264618 115264761 -6579095 - B1_Mus2 SINE Alu 0 147 2 4 1464 222 217 186 35 chr11 115264774 115264860 -6578996 - PB1D10 SINE Alu -7 110 12 4 1464 244 286 109 57 chr11 115265797 115265990 -6577866 - L2a LINE L2 -6 3420 3218 4 1464 565 290 0 0 chr11 115266016 115266147 -6577709 - ID_B1 SINE B4 -1 223 93 4 1464 332 281 76 0 chr11 115266161 115266264 -6577592 - B1F1 SINE Alu -8 112 1 4 1464 294 301 48 19 chr11 115266313 115266418 -6577438 + PB1D10 SINE Alu 5 112 -5 4 1464 257 340 89 66 chr11 115266548 115266806 -6577050 - L2a LINE L2 -585 2834 2571 4 1464 202 189 0 0 chr11 115267568 115267605 -6576251 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1464 630 264 0 79 chr11 115267607 115267784 -6576072 - RSINE1 SINE B4 0 165 3 4 1464 368 219 27 0 chr11 115267933 115268006 -6575850 + ID4_ SINE ID 3 77 -6 4 1464 216 0 0 0 chr11 115268013 115268037 -6575819 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 5 1464 1171 36 14 0 chr11 115268040 115268179 -6575677 - B1_Mus2 SINE Alu -6 141 1 5 1464 301 306 54 9 chr11 115268653 115268765 -6575091 + B1F SINE Alu 33 149 0 5 1464 656 256 7 0 chr11 115268870 115269007 -6574849 + ID_B1 SINE B4 87 224 0 5 1464 401 222 89 0 chr11 115269088 115269178 -6574678 - B1F SINE Alu -5 144 47 5 1464 921 151 0 27 chr11 115269865 115270015 -6573841 + B1_Mus1 SINE Alu 1 146 -2 5 1464 923 207 6 0 chr11 115270016 115270190 -6573666 + B2_Mm2 SINE B2 1 175 -20 5 1464 194 288 127 0 chr11 115270569 115270666 -6573190 + MIR SINE MIR 39 146 -122 5 1464 234 0 0 0 chr11 115270691 115270717 -6573139 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1464 397 290 160 0 chr11 115272588 115272719 -6571137 - RSINE1 SINE B4 -5 160 9 5 1464 527 252 81 0 chr11 115272752 115272875 -6570981 - RSINE1 SINE B4 -31 134 2 5 1464 361 305 53 0 chr11 115272945 115273076 -6570780 + RSINE1 SINE B4 28 165 0 5 1464 674 0 0 0 chr11 115274294 115274367 -6569489 + tRNA-Arg-AGG tRNA tRNA 1 73 -3 5 1464 21 0 0 0 chr11 115274375 115274396 -6569460 + AT_rich Low_complexity Low_complexity 1 21 0 5 1464 662 0 0 0 chr11 115274618 115274690 -6569166 - tRNA-Arg-AGG tRNA tRNA -4 72 1 5 1464 632 41 0 0 chr11 115275092 115275165 -6568691 + tRNA-Arg-CGG tRNA tRNA 1 73 -3 5 1464 256 227 0 0 chr11 115275327 115275371 -6568485 - ID_B1 SINE B4 -92 132 89 5 1464 1378 57 85 0 chr11 115275738 115275915 -6567941 - B2_Mm2 SINE B2 -2 193 2 5 1464 398 302 23 31 chr11 115275974 115276104 -6567752 - B1F2 SINE Alu -20 129 1 5 1464 240 260 27 14 chr11 115276044 115276118 -6567738 - B4 SINE B4 -148 144 70 5 1464 234 0 0 0 chr11 115276118 115276144 -6567712 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1464 1074 70 28 14 chr11 115276146 115276291 -6567565 - B1_Mm SINE Alu 0 147 1 5 1464 459 274 0 9 chr11 115277975 115278089 -6565767 + PB1D9 SINE Alu 8 120 0 5 1464 718 197 0 0 chr11 115278714 115278841 -6565015 + B3 SINE B2 1 127 -89 5 1464 555 207 8 33 chr11 115279449 115279569 -6564287 + RSINE1 SINE B4 3 119 -46 5 1464 254 327 59 59 chr11 115279569 115279618 -6564238 + B2_Mm2 SINE B2 2 170 -25 5 1464 410 215 32 0 chr11 115279977 115280070 -6563786 + ID_B1 SINE B4 2 97 -127 5 1464 432 0 0 0 chr11 115280542 115280590 -6563266 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 5 1464 180 77 0 0 chr11 115280610 115280636 -6563220 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 5 1464 28 29 0 0 chr11 115281443 115281478 -6562378 + GC_rich Low_complexity Low_complexity 1 35 0 5 1464 22 106 0 0 chr11 115281612 115281697 -6562159 + GC_rich Low_complexity Low_complexity 1 85 0 5 1464 21 36 0 0 chr11 115281822 115281850 -6562006 + GC_rich Low_complexity Low_complexity 1 28 0 5 1464 333 0 0 0 chr11 115283164 115283201 -6560655 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 1464 731 96 128 0 chr11 115284193 115284318 -6559538 + B1_Mus1 SINE Alu 7 147 -1 5 1464 192 40 0 0 chr11 115284425 115284450 -6559406 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1464 485 293 8 0 chr11 115284462 115284585 -6559271 + RSINE1 SINE B4 3 126 -39 5 1464 397 176 290 21 chr11 115284622 115284682 -6559174 - PB1D9 SINE Alu -1 119 33 5 1464 270 0 0 0 chr11 115284682 115284712 -6559144 + (CTG)n Simple_repeat Simple_repeat 1 30 0 5 1464 397 176 290 21 chr11 115284712 115284744 -6559112 - PB1D9 SINE Alu -88 32 3 5 1464 233 227 133 0 chr11 115284781 115284856 -6559000 - L1MC4 LINE L1 -2 8040 7956 5 1464 231 36 0 0 chr11 115284870 115284898 -6558958 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1464 917 80 120 0 chr11 115285022 115285147 -6558709 + B1_Mus2 SINE Alu 1 140 -7 5 1464 216 0 0 0 chr11 115285932 115285956 -6557900 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 5 1464 230 164 127 0 chr11 115286089 115286144 -6557712 - PB1D10 SINE Alu -33 84 23 5 1464 285 51 0 0 chr11 115287243 115287282 -6556574 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 5 1464 237 239 44 15 chr11 115287623 115287691 -6556165 - ID4_ SINE ID -13 70 1 5 1464 306 264 45 22 chr11 115288030 115288119 -6555737 + B1F SINE Alu 18 108 -41 5 1464 806 194 29 0 chr11 115288133 115288272 -6555584 + B1_Mur2 SINE Alu 2 144 -5 5 1464 602 259 126 6 chr11 115288281 115288456 -6555400 + B3A SINE B2 1 196 -2 5 1464 267 350 0 0 chr11 115289783 115289863 -6553993 - ID4_ SINE ID -2 81 2 5 1464 211 50 49 24 chr11 115290449 115290490 -6553366 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1464 189 0 0 0 chr11 115290503 115290524 -6553332 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1464 320 283 0 106 chr11 115290868 115291038 -6552818 + B4A SINE B4 141 292 0 5 1464 459 0 0 0 chr11 115292650 115292701 -6551155 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1464 571 192 19 0 chr11 115292994 115293098 -6550758 + PB1D9 SINE Alu 5 110 -10 5 1464 856 219 232 12 chr11 115295085 115295326 -6548530 + Lx5 LINE L1 6752 7045 -5 5 1464 385 244 0 82 chr11 115295667 115295680 -6548176 + MT2B LTR ERVL 152 156 -445 5 1464 571 150 53 9 chr11 115295680 115295794 -6548062 + PB1D9 SINE Alu 1 119 -1 5 1464 970 218 71 0 chr11 115295869 115296066 -6547790 - B3 SINE B2 -2 214 4 5 1464 212 274 0 0 chr11 115296278 115296329 -6547527 + B1F2 SINE Alu 9 59 -90 5 1464 557 239 175 31 chr11 115296344 115296538 -6547318 - ID_B1 SINE B4 -2 222 1 5 1464 324 266 0 0 chr11 115296612 115296691 -6547165 + ID_B1 SINE B4 143 221 -3 5 1464 22 0 0 0 chr11 115296713 115296735 -6547121 + AT_rich Low_complexity Low_complexity 1 22 0 5 1464 549 221 27 27 chr11 115296795 115296944 -6546912 - RSINE1 SINE B4 -15 150 2 5 1464 546 227 63 31 chr11 115298013 115298039 -6545817 - B3 SINE B2 -4 212 185 5 1464 435 19 0 0 chr11 115298039 115298091 -6545765 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1464 546 227 63 31 chr11 115298091 115298223 -6545633 - B3 SINE B2 -32 184 49 5 1464 207 114 0 0 chr11 115298380 115298415 -6545441 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1464 396 141 28 0 chr11 115298510 115298581 -6545275 - B1_Mur2 SINE Alu -56 93 21 5 1464 531 303 16 27 chr11 115298597 115298780 -6545076 - B3A SINE B2 -17 181 1 5 1464 813 241 96 0 chr11 115298809 115298996 -6544860 - B3 SINE B2 -9 207 3 5 1464 1099 176 57 29 chr11 115299144 115299354 -6544502 + B3 SINE B2 1 216 0 5 1464 863 235 49 0 chr11 115299482 115299686 -6544170 + B3 SINE B2 1 214 -2 5 1464 389 296 9 27 chr11 115299874 115299985 -6543871 + ID_B1 SINE B4 98 206 -18 5 1464 775 227 104 54 chr11 115300029 115300327 -6543529 - RCHARR1 DNA MER1_type -493 481 169 5 1464 1567 68 0 0 chr11 115300468 115300660 -6543196 + B2_Mm1t SINE B2 1 192 -1 5 1464 355 221 0 0 chr11 115300989 115301057 -6542799 + ID4 SINE ID 5 72 -11 5 1464 192 152 0 0 chr11 115301058 115301091 -6542765 + GA-rich Low_complexity Low_complexity 1 33 0 5 1464 1176 54 0 13 chr11 115301125 115301274 -6542582 + B1_Mus1 SINE Alu 2 148 0 5 1464 806 212 28 16 chr11 115301310 115301492 -6542364 + B3 SINE B2 27 210 -6 5 1464 424 248 65 84 chr11 115303245 115303286 -6540570 + B4 SINE B4 54 91 -201 5 1464 600 211 32 16 chr11 115303286 115303411 -6540445 + B1_Mur2 SINE Alu 1 127 -22 5 1464 833 97 267 14 chr11 115303412 115303558 -6540298 - B2_Mm2 SINE B2 -11 184 2 5 1464 495 165 124 8 chr11 115303853 115303975 -6539881 + B3 SINE B2 4 146 -47 5 1464 183 42 0 0 chr11 115304001 115304025 -6539831 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1464 1160 58 0 0 chr11 115304025 115304164 -6539692 - B1_Mus1 SINE Alu -9 139 1 5 1464 491 224 51 8 chr11 115304446 115304563 -6539293 + B1F2 SINE Alu 21 142 -7 5 1464 404 184 314 65 chr11 115304571 115304740 -6539116 + B3 SINE B2 1 211 -5 5 1464 337 278 22 0 chr11 115304747 115304837 -6539019 + ID_B1 SINE B4 80 171 -53 5 1464 225 0 0 0 chr11 115304865 115304890 -6538966 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1464 820 246 8 101 chr11 115304890 115304977 -6538879 + B4A SINE B4 3 79 -213 5 1464 1192 75 0 0 chr11 115304977 115305124 -6538732 + B1_Mus1 SINE Alu 2 148 0 5 1464 820 246 8 101 chr11 115305124 115305291 -6538565 + B4A SINE B4 80 232 -60 5 1464 560 179 291 13 chr11 115305291 115305449 -6538407 + B3 SINE B2 2 203 -13 5 1464 960 135 14 0 chr11 115305475 115305616 -6538240 - B1_Mur4 SINE Alu -7 143 1 5 1464 934 130 13 20 chr11 115305720 115305869 -6537987 + B1_Mur3 SINE Alu 1 148 -1 5 1464 439 86 75 54 chr11 115305870 115306003 -6537853 + GA-rich Low_complexity Low_complexity 4 140 0 5 1464 1432 60 49 0 chr11 115306003 115306188 -6537668 + B2_Mm2 SINE B2 1 194 -1 5 1464 439 86 75 54 chr11 115306188 115306201 -6537655 + polypurine Low_complexity Low_complexity 141 153 0 5 1464 1013 80 73 0 chr11 115307313 115307450 -6536406 - B1_Mus2 SINE Alu 0 147 1 5 1464 316 235 116 12 chr11 115308720 115308806 -6535050 + PB1D7 SINE Alu 25 119 -1 5 1464 373 283 0 20 chr11 115310952 115311053 -6532803 + B1F SINE Alu 5 103 -46 5 1464 279 329 0 0 chr11 115311639 115311718 -6532138 + ID4_ SINE ID 3 81 -2 5 1464 888 175 42 0 chr11 115312163 115312306 -6531550 + B1_Mur4 SINE Alu 2 150 0 6 1464 262 190 17 17 chr11 115312339 115312398 -6531458 + RSINE1 SINE B4 2 60 -105 6 1464 259 324 67 56 chr11 115312571 115312751 -6531105 + MER96B DNA hAT 16 197 -220 6 1464 576 194 73 52 chr11 115312914 115313050 -6530806 - B1F2 SINE Alu 0 149 11 6 1464 222 250 0 56 chr11 115313057 115313129 -6530727 - ID4_ SINE ID -15 68 1 6 1464 816 153 0 0 chr11 115313065 115313202 -6530654 - ZP3AR Satellite Satellite -53 159 23 6 1464 660 275 37 53 chr11 115313722 115313910 -6529946 - RMER15-int LTR ERVL -605 4394 4210 6 1464 219 204 61 0 chr11 115313968 115314017 -6529839 + B1_Mus1 SINE Alu 4 55 -93 6 1464 483 236 0 0 chr11 115314017 115314127 -6529729 + (CAGG)n Simple_repeat Simple_repeat 2 111 0 6 1464 581 106 55 46 chr11 115314132 115314241 -6529615 + B1_Mur4 SINE Alu 41 150 0 6 1464 601 242 81 0 chr11 115314303 115314427 -6529429 + B1_Mur1 SINE Alu 3 136 -13 6 1464 458 151 9 28 chr11 115314432 115314541 -6529315 + GA-rich Low_complexity Low_complexity 3 109 0 6 1464 1310 341 98 50 chr11 115314549 115315316 -6528540 - RMER15-int LTR ERVL -2854 2145 1342 6 1464 380 243 0 80 chr11 115315336 115315448 -6528408 - MT2A LTR ERVL 0 601 499 6 1464 283 169 16 33 chr11 115315449 115315510 -6528346 + MTC LTR MaLR 1 60 -361 6 1464 216 97 0 0 chr11 115315510 115315541 -6528315 + (TTA)n Simple_repeat Simple_repeat 2 32 0 6 1464 1024 59 0 0 chr11 115315556 115315691 -6528165 - B2_Mm2 SINE B2 -58 137 3 6 1464 301 176 0 0 chr11 115315691 115315740 -6528116 + MTC LTR MaLR 46 94 -327 6 1464 1247 41 0 0 chr11 115315741 115315887 -6527969 + B1_Mus2 SINE Alu 1 146 -1 6 1464 398 250 62 39 chr11 115315939 115316068 -6527788 - MT2A LTR ERVL -401 132 1 6 1464 1152 97 0 0 chr11 115316100 115316245 -6527611 + B1_Mus1 SINE Alu 4 148 0 6 1464 330 204 43 0 chr11 115316258 115316381 -6527475 - B3 SINE B2 0 216 1 6 1464 1166 58 0 0 chr11 115316423 115316562 -6527294 - B1_Mus1 SINE Alu -8 140 2 6 1464 1380 266 167 10 chr11 115316565 115317063 -6526793 - RMER15-int LTR ERVL -3700 1299 723 6 1464 290 286 71 0 chr11 115317063 115317161 -6526695 - B3 SINE B2 -10 206 102 6 1464 235 256 138 11 chr11 115317233 115317320 -6526536 - RSINE1 SINE B4 -65 100 3 6 1464 738 251 56 41 chr11 115318392 115318658 -6525198 + B4A SINE B4 1 270 -22 6 1464 556 223 86 37 chr11 115319096 115319289 -6524567 + B3A SINE B2 20 216 0 6 1464 1424 76 16 16 chr11 115320644 115320832 -6523024 - B2_Mm2 SINE B2 -6 189 2 6 1464 335 240 132 19 chr11 115320834 115320940 -6522916 - RSINE1 SINE B4 -45 120 3 6 1464 969 112 0 0 chr11 115321072 115321215 -6522641 + B1_Mus1 SINE Alu 6 148 0 6 1464 878 259 26 0 chr11 115321229 115321422 -6522434 + B3A SINE B2 1 198 0 6 1464 355 229 0 24 chr11 115321644 115321769 -6522087 + CT-rich Low_complexity Low_complexity 6 127 0 6 1464 26 30 0 0 chr11 115321773 115321806 -6522050 + AT_rich Low_complexity Low_complexity 1 33 0 6 1464 775 230 7 0 chr11 115321809 115321957 -6521899 + B1_Mur1 SINE Alu 1 149 0 6 1464 192 152 0 0 chr11 115321958 115321991 -6521865 + A-rich Low_complexity Low_complexity 2 34 0 6 1464 948 263 9 5 chr11 115321993 115322207 -6521649 + B3 SINE B2 2 216 0 6 1464 541 146 73 0 chr11 115322551 115322647 -6521209 + B2_Mm1t SINE B2 91 193 0 6 1464 534 157 0 24 chr11 115322647 115322771 -6521085 + GA-rich Low_complexity Low_complexity 1 121 0 6 1464 189 74 0 0 chr11 115323199 115323226 -6520630 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1464 510 17 0 0 chr11 115325364 115325423 -6518433 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 6 1464 594 0 0 0 chr11 115325563 115325629 -6518227 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1464 1409 35 53 0 chr11 115326471 115326641 -6517215 + B2_Mm2 SINE B2 2 180 -15 6 1464 461 64 0 37 chr11 115326646 115326702 -6517154 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1464 1146 49 42 0 chr11 115326702 115326844 -6517012 - B1_Mus1 SINE Alu 0 148 1 6 1464 461 64 0 37 chr11 115326844 115326868 -6516988 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1464 426 236 34 0 chr11 115327007 115327096 -6516760 + B1F SINE Alu 56 147 -2 6 1464 918 244 53 5 chr11 115327260 115327466 -6516390 - B3 SINE B2 0 216 1 6 1464 201 132 0 0 chr11 115327541 115327579 -6516277 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 6 1464 593 171 176 16 chr11 115327584 115327709 -6516147 - B1_Mus2 SINE Alu 0 147 3 6 1464 198 243 56 14 chr11 115327767 115327838 -6516018 - L2a LINE L2 -321 3105 3032 6 1464 730 290 37 5 chr11 115327878 115328093 -6515763 + B4 SINE B4 71 292 0 6 1464 327 164 0 0 chr11 115328102 115328163 -6515693 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1464 312 343 10 0 chr11 115328163 115328265 -6515591 + HAL1-3A_ME LINE L1 1975 2077 -781 6 1464 250 284 74 0 chr11 115328544 115328639 -6515217 - L2a LINE L2 -876 2543 2442 6 1464 252 0 0 0 chr11 115328653 115328681 -6515175 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1464 183 115 18 55 chr11 115329123 115329178 -6514678 + C-rich Low_complexity Low_complexity 5 57 0 6 1464 485 232 0 10 chr11 115329224 115329324 -6514532 - PB1D7 SINE Alu -10 110 12 6 1464 299 246 40 40 chr11 115329256 115329332 -6514524 - ID_B1 SINE B4 -67 157 82 6 1464 244 306 28 0 chr11 115329344 115329416 -6514440 - ID4_ SINE ID -9 74 1 6 1464 351 113 0 0 chr11 115329558 115329611 -6514245 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1464 545 182 154 0 chr11 115329916 115330026 -6513830 + B3 SINE B2 84 210 -6 6 1464 593 231 23 0 chr11 115330039 115330169 -6513687 - B1_Mur1 SINE Alu -5 144 12 6 1464 253 226 0 31 chr11 115330182 115330198 -6513658 + polypurine Low_complexity Low_complexity 2 17 0 6 1464 1256 41 0 0 chr11 115330198 115330345 -6513511 + B1_Mus1 SINE Alu 2 148 0 6 1464 253 226 0 31 chr11 115330345 115330424 -6513432 + GA-rich Low_complexity Low_complexity 18 94 0 6 1464 460 228 139 66 chr11 115331645 115331767 -6512089 + ID_B1 SINE B4 84 214 -10 6 1464 216 0 0 0 chr11 115331777 115331801 -6512055 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 1464 698 223 119 17 chr11 115331805 115331995 -6511861 + B3 SINE B2 27 216 0 6 1464 1354 101 16 0 chr11 115331998 115332187 -6511669 + B2_Mm1t SINE B2 1 192 -1 6 1464 862 241 14 63 chr11 115332205 115332231 -6511625 + B3 SINE B2 2 22 -194 6 1464 1276 101 0 32 chr11 115332231 115332416 -6511440 - B2_Mm2 SINE B2 -14 181 3 6 1464 862 241 14 63 chr11 115332416 115332610 -6511246 + B3 SINE B2 23 211 -5 6 1464 1604 27 38 0 chr11 115332728 115332913 -6510943 - B2_Mm1a SINE B2 0 193 2 6 1464 207 0 0 0 chr11 115333454 115333477 -6510379 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 6 1464 481 207 21 28 chr11 115333477 115333584 -6510272 - PB1D9 SINE Alu -7 113 8 6 1464 627 221 69 0 chr11 115335515 115335660 -6508196 + RSINE1 SINE B4 11 165 0 6 1464 245 217 106 24 chr11 115336623 115336708 -6507148 - B1_Mur1 SINE Alu 0 149 26 6 1464 247 250 31 0 chr11 115336758 115336822 -6507034 + CT-rich Low_complexity Low_complexity 3 68 0 6 1464 443 248 26 17 chr11 115337651 115337766 -6506090 + PB1D7 SINE Alu 1 116 -4 6 1464 1214 54 0 20 chr11 115337968 115338119 -6505737 - B1_Mus1 SINE Alu 0 148 1 6 1464 241 231 0 0 chr11 115338234 115338286 -6505570 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1464 586 298 0 7 chr11 115338328 115338470 -6505386 + B1_Mur1 SINE Alu 3 143 -6 6 1464 524 254 8 16 chr11 115338590 115338714 -6505142 - B4A SINE B4 -169 123 1 6 1464 198 242 97 0 chr11 115338728 115338790 -6505066 - MIRm SINE MIR -19 257 190 6 1464 384 155 202 0 chr11 115340168 115340252 -6503604 - PB1D9 SINE Alu -19 101 1 6 1464 442 259 62 0 chr11 115340253 115340365 -6503491 - RSINE1 SINE B4 -44 121 3 6 1464 520 254 53 23 chr11 115340532 115340665 -6503191 + ID_B1 SINE B4 88 224 0 6 1464 399 302 67 31 chr11 115340670 115340865 -6502991 - L1MC3 LINE L1 -42 7743 7542 6 1464 516 296 12 6 chr11 115341135 115341298 -6502558 - RSINE1 SINE B4 0 165 2 6 1464 366 242 64 8 chr11 115341339 115341464 -6502392 - RMER15 LTR ERVL -23 552 421 6 1464 1215 61 0 0 chr11 115341836 115341983 -6501873 + B1_Mus1 SINE Alu 2 148 0 6 1464 251 235 45 90 chr11 115342158 115342229 -6501627 - RCHARR1 DNA MER1_type 0 974 903 6 1464 793 169 31 0 chr11 115342229 115342359 -6501497 - B1_Mur4 SINE Alu -13 137 4 6 1464 261 0 0 0 chr11 115342360 115342389 -6501467 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1464 486 0 0 0 chr11 115342389 115342442 -6501414 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1464 251 235 45 90 chr11 115342442 115342456 -6501400 - RCHARR1 DNA MER1_type -72 902 891 6 1464 354 261 0 200 chr11 115342456 115342518 -6501338 + ID_B1 SINE B4 116 167 -57 6 1464 1274 34 0 0 chr11 115342518 115342664 -6501192 + B1_Mus2 SINE Alu 2 147 0 6 1464 354 261 0 200 chr11 115342664 115342716 -6501140 + ID_B1 SINE B4 168 207 -17 6 1464 743 238 89 9 chr11 115342737 115342962 -6500894 - RCHARR1 DNA MER1_type -146 828 586 6 1464 302 202 40 101 chr11 115343246 115343345 -6500511 + MT2B LTR ERVL 151 243 -358 6 22 614 239 0 0 chr11 115343267 115343376 -6500480 + PB1D9 SINE Alu 10 118 -2 6 1465 275 287 81 0 chr11 115343695 115343782 -6500074 + B1F1 SINE Alu 48 141 -8 6 1465 483 238 9 19 chr11 115343792 115343899 -6499957 + PB1D9 SINE Alu 15 120 0 6 1465 1149 123 12 6 chr11 115343904 115344073 -6499783 + B2_Mm2 SINE B2 1 170 -25 6 1465 722 185 91 15 chr11 115344073 115344205 -6499651 + B1_Mur4 SINE Alu 1 142 -8 6 1465 486 0 0 0 chr11 115344478 115344532 -6499324 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1465 246 32 0 0 chr11 115345318 115345349 -6498507 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1465 762 98 0 0 chr11 115345349 115345451 -6498405 - B1_Mus1 SINE Alu -8 140 39 7 1465 356 158 77 26 chr11 115345384 115345462 -6498394 - RLTR25B LTR ERVK -519 509 428 7 1465 657 244 43 62 chr11 115345478 115345505 -6498351 - B3 SINE B2 -10 206 183 7 1465 342 0 0 0 chr11 115345505 115345543 -6498313 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 7 1465 657 244 43 62 chr11 115345543 115345725 -6498131 - B3 SINE B2 -34 182 1 7 1465 478 248 19 76 chr11 115345887 115346044 -6497812 + ID_B1 SINE B4 63 210 -14 7 1465 662 206 15 8 chr11 115345912 115346044 -6497812 + B1F2 SINE Alu 3 135 -14 7 1465 267 279 96 91 chr11 115346044 115346109 -6497747 + MT2B2 LTR ERVL 166 363 -221 7 1465 467 278 61 27 chr11 115346236 115346384 -6497472 - RSINE1 SINE B4 -11 154 2 7 1465 511 170 0 41 chr11 115346408 115346506 -6497350 - B1_Mus1 SINE Alu -51 97 4 7 1465 325 224 0 109 chr11 115346506 115346518 -6497338 - ID_B1 SINE B4 -48 176 79 7 1465 25 31 0 0 chr11 115347056 115347088 -6496768 + AT_rich Low_complexity Low_complexity 1 32 0 7 1465 1678 31 0 0 chr11 115347095 115347286 -6496570 + B2_Mm1a SINE B2 1 191 -2 7 1465 816 240 73 45 chr11 115347286 115347644 -6496212 - Lx6 LINE L1 -30 7430 7063 7 1465 371 302 127 13 chr11 115347944 115348172 -6495684 - Lx5 LINE L1 -701 6349 6096 7 1465 322 207 57 68 chr11 115348179 115348267 -6495589 + 4.5SRNA scRNA scRNA 2 88 -6 7 1465 683 168 109 0 chr11 115348193 115348312 -6495544 + B1_Mur1 SINE Alu 7 138 -11 7 1465 504 284 216 71 chr11 115348343 115348428 -6495428 - B4A SINE B4 0 292 220 7 1465 200 34 0 33 chr11 115348428 115348458 -6495398 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1465 1124 49 0 59 chr11 115348458 115348606 -6495250 - B1_Mus1 SINE Alu -4 144 6 7 1465 504 284 216 71 chr11 115348606 115348653 -6495203 - B4A SINE B4 -73 219 140 7 1465 495 48 0 0 chr11 115348653 115348715 -6495141 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1465 504 284 216 71 chr11 115348715 115348839 -6495017 - B4A SINE B4 -153 139 3 7 1465 281 290 49 18 chr11 115348882 115349019 -6494837 - B3A SINE B2 -3 213 76 7 1465 768 242 28 17 chr11 115349084 115349290 -6494566 - B3A SINE B2 -15 201 2 7 1465 316 260 71 30 chr11 115349353 115349452 -6494404 + PB1D10 SINE Alu 6 108 -9 7 1465 216 0 0 0 chr11 115349498 115349522 -6494334 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1465 539 276 85 7 chr11 115349526 115349679 -6494177 - B3A SINE B2 -31 167 3 7 1465 243 279 136 59 chr11 115351351 115351469 -6492387 + B1_Mur1 SINE Alu 8 134 -15 7 1465 306 0 0 0 chr11 115352786 115352820 -6491036 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1465 683 216 32 0 chr11 115353734 115353859 -6489997 - B1_Mur3 SINE Alu -16 133 5 7 1465 440 223 115 10 chr11 115353951 115354055 -6489801 + PB1D9 SINE Alu 1 115 -5 7 1465 1254 89 0 37 chr11 115354058 115354245 -6489611 + B2_Mm2 SINE B2 2 181 -14 7 1465 216 185 0 0 chr11 115354662 115354716 -6489140 + T-rich Low_complexity Low_complexity 1 54 0 7 1465 268 303 20 29 chr11 115355042 115355055 -6488801 - ID_B1 SINE B4 -1 223 213 7 1465 1314 27 0 0 chr11 115355055 115355202 -6488654 - B1_Mm SINE Alu 0 147 1 7 1465 268 303 20 29 chr11 115355202 115355290 -6488566 - ID_B1 SINE B4 -12 212 123 7 1465 436 238 48 66 chr11 115355300 115355440 -6488416 - B3A SINE B2 -36 180 29 7 1465 939 148 14 7 chr11 115355440 115355583 -6488273 - B1_Mur4 SINE Alu -5 145 2 7 1465 436 209 24 106 chr11 115355583 115355618 -6488238 - B3A SINE B2 -158 40 6 7 1465 827 138 21 140 chr11 115356068 115356254 -6487602 - B2_Mm2 SINE B2 -30 165 2 7 1465 893 35 2 17 chr11 115356617 115356749 -6487107 + B1_Mm SINE Alu 1 132 -17 7 1465 901 100 31 0 chr11 115357870 115358000 -6485856 - B2_Mm2 SINE B2 -55 140 7 7 1465 192 80 60 0 chr11 115358092 115358131 -6485725 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1465 897 8 246 0 chr11 115358131 115358249 -6485607 - B1_Mm SINE Alu 0 147 1 7 1465 192 80 60 0 chr11 115358249 115358259 -6485597 + (TTTTTG)n Simple_repeat Simple_repeat 3 13 0 7 1465 465 276 57 29 chr11 115358294 115358469 -6485387 - B3A SINE B2 -15 183 4 7 1465 260 230 115 51 chr11 115358497 115358575 -6485281 + ID_B1 SINE B4 49 131 -93 7 1465 474 203 178 0 chr11 115359809 115359927 -6483929 - B1_Mur4 SINE Alu 0 150 12 7 1465 316 167 0 62 chr11 115359935 115359999 -6483857 - B1_Mur2 SINE Alu -1 148 89 7 1465 626 155 103 0 chr11 115359998 115360114 -6483742 + B1_Mur4 SINE Alu 14 141 -9 7 1465 437 204 38 67 chr11 115360427 115360532 -6483324 - PB1D9 SINE Alu 0 120 19 7 1465 594 200 23 39 chr11 115360532 115360662 -6483194 + B1_Mur3 SINE Alu 1 128 -21 7 1465 180 311 80 13 chr11 115360807 115360882 -6482974 + L2c LINE L2 3267 3346 -41 7 1465 417 211 170 19 chr11 115361393 115361499 -6482357 + B1_Mur1 SINE Alu 12 133 -16 7 1465 286 97 16 16 chr11 115361509 115361545 -6482311 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 7 1465 1183 62 7 0 chr11 115361545 115361689 -6482167 - B1_Mus2 SINE Alu 0 147 3 7 1465 286 97 16 16 chr11 115361689 115361715 -6482141 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 7 1465 234 297 0 30 chr11 115361740 115361806 -6482050 - B1_Mus2 SINE Alu -73 74 11 7 1465 802 175 27 27 chr11 115362116 115362263 -6481593 + B1_Mus1 SINE Alu 2 148 0 7 1465 292 203 15 15 chr11 115362810 115362875 -6480981 - PB1D7 SINE Alu -49 71 7 7 1465 291 208 27 40 chr11 115362824 115362899 -6480957 - ID_B1 SINE B4 -85 139 66 7 1465 1506 77 0 5 chr11 115362994 115363190 -6480666 - B2_Mm2 SINE B2 0 195 1 7 1465 610 161 100 17 chr11 115363442 115363562 -6480294 + B3 SINE B2 1 130 -86 7 1465 252 0 0 0 chr11 115363577 115363605 -6480251 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1465 1233 48 7 0 chr11 115363605 115363750 -6480106 + B1_Mus2 SINE Alu 1 146 -1 7 1465 24 32 0 0 chr11 115363778 115363809 -6480047 + AT_rich Low_complexity Low_complexity 1 31 0 7 1465 255 196 107 0 chr11 115363838 115363894 -6479962 + B3 SINE B2 149 210 -6 7 1465 295 208 133 37 chr11 115363970 115364094 -6479762 - PB1D10 SINE Alu -15 132 2 7 1465 658 150 91 38 chr11 115364205 115364337 -6479519 + B1_Mus2 SINE Alu 7 145 -2 7 1465 544 279 37 3 chr11 115365057 115365213 -6478643 + B3 SINE B2 16 174 -24 7 1465 242 245 153 41 chr11 115365200 115365225 -6478631 + B4A SINE B4 68 173 -116 7 1465 376 186 100 0 chr11 115365225 115365295 -6478561 + B1_Mur4 SINE Alu 14 90 -60 7 1465 557 240 18 79 chr11 115365299 115365476 -6478380 + B3 SINE B2 30 201 -15 7 1465 595 184 101 31 chr11 115365668 115365797 -6478059 + B1_Mur1 SINE Alu 1 138 -11 7 1465 1512 58 16 0 chr11 115365797 115365987 -6477869 + B2_Mm1a SINE B2 1 193 0 7 1465 828 163 42 21 chr11 115366141 115366285 -6477571 + B1_Mur4 SINE Alu 2 148 -2 7 1465 379 205 24 12 chr11 115366487 115366571 -6477285 + ID_B1 SINE B4 136 220 -4 7 1465 408 271 96 77 chr11 115366640 115366729 -6477127 + B3 SINE B2 1 88 -128 7 1465 778 199 14 14 chr11 115366729 115366877 -6476979 - B1_Mur4 SINE Alu -2 148 1 7 1465 408 271 96 77 chr11 115366877 115366995 -6476861 + B3 SINE B2 89 212 -4 7 1465 240 171 171 73 chr11 115367056 115367075 -6476781 + PB1D9 SINE Alu 30 57 -63 7 1465 497 16 16 0 chr11 115367075 115367137 -6476719 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 7 1465 240 171 171 73 chr11 115367137 115367199 -6476657 + PB1D9 SINE Alu 58 118 -2 7 1465 268 231 108 60 chr11 115367404 115367487 -6476369 + B1F2 SINE Alu 4 90 -59 7 1465 229 304 8 43 chr11 115367486 115367506 -6476350 + B4A SINE B4 67 83 -209 7 1465 222 350 0 24 chr11 115367506 115367588 -6476268 + B1_Mur3 SINE Alu 1 80 -69 7 1465 1066 93 0 0 chr11 115367715 115367854 -6476002 + B1_Mus2 SINE Alu 2 140 -7 7 1465 281 292 52 0 chr11 115367905 115368001 -6475855 + PB1 SINE Alu 1 101 -26 7 1465 1034 92 28 0 chr11 115368202 115368335 -6475521 + B1_Mus1 SINE Alu 2 138 -10 7 1465 342 0 0 0 chr11 115368335 115368373 -6475483 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 7 1465 835 249 23 28 chr11 115368388 115368603 -6475253 - B3 SINE B2 -2 214 1 7 1465 398 144 124 80 chr11 115368696 115368809 -6475047 + PB1D9 SINE Alu 2 119 -1 7 1465 237 241 52 37 chr11 115368879 115368991 -6474865 + B1_Mm SINE Alu 5 117 -32 7 1465 491 288 111 37 chr11 115368988 115369214 -6474642 + MER21B LTR ERV1 342 599 -264 7 1465 466 308 35 0 chr11 115369214 115369357 -6474499 + B1F SINE Alu 1 148 -1 7 1465 326 317 109 91 chr11 115369357 115369368 -6474488 + MER21B LTR ERV1 572 590 -273 7 1465 328 253 80 0 chr11 115369368 115369443 -6474413 + ID_B1 SINE B4 12 92 -132 7 1465 326 317 109 91 chr11 115369443 115369526 -6474330 + MER21B LTR ERV1 591 744 -119 7 1465 298 328 52 26 chr11 115369806 115369922 -6473934 + MIR SINE MIR 100 218 -44 7 1465 660 281 13 40 chr11 115370072 115370224 -6473632 + RSINE1 SINE B4 15 162 -3 7 1465 340 214 200 19 chr11 115370235 115370340 -6473516 + B3A SINE B2 1 124 -74 7 1465 249 33 0 0 chr11 115370570 115370600 -6473256 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1465 1638 16 5 21 chr11 115370605 115370799 -6473057 - B2_Mm1a SINE B2 -2 191 1 7 1465 1661 42 0 0 chr11 115370869 115371061 -6472795 + B2_Mm1a SINE B2 2 193 0 7 1465 446 222 77 0 chr11 115371909 115372026 -6471830 + B3A SINE B2 28 153 -45 7 1465 916 180 106 25 chr11 115372075 115372274 -6471582 + B3 SINE B2 2 216 0 7 1465 522 250 83 30 chr11 115372323 115372492 -6471364 + B3A SINE B2 5 182 -16 7 1465 591 239 35 7 chr11 115372661 115372804 -6471052 + B1_Mur2 SINE Alu 2 148 -1 7 1465 315 284 99 41 chr11 115372844 115372965 -6470891 + B1F1 SINE Alu 22 149 0 7 1465 238 293 11 109 chr11 115374208 115374300 -6469556 - BLACKJACK DNA AcHobo -2510 434 352 8 1465 424 240 40 0 chr11 115375972 115376072 -6467784 + RSINE1 SINE B4 2 105 -60 8 1465 1252 60 32 0 chr11 115376154 115376339 -6467517 - MusHAL1 LINE L1 -631 2081 1891 8 1465 213 39 0 0 chr11 115376387 115376413 -6467443 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1465 316 274 142 71 chr11 115376415 115376443 -6467413 + B4A SINE B4 68 161 -131 8 1465 493 280 0 0 chr11 115376443 115376561 -6467295 + PB1D7 SINE Alu 1 118 -2 8 1465 316 274 142 71 chr11 115376561 115376584 -6467272 + B4A SINE B4 162 248 -44 8 1465 376 243 217 14 chr11 115376593 115376731 -6467125 + B3A SINE B2 7 172 -26 8 1465 500 167 18 105 chr11 115376744 115376858 -6466998 + PB1D9 SINE Alu 2 105 -15 8 1465 284 170 39 265 chr11 115376890 115377052 -6466804 + B1_Mur4 SINE Alu 6 129 -18 8 1465 268 103 17 17 chr11 115377053 115377112 -6466744 + (CCCCCA)n Simple_repeat Simple_repeat 2 60 0 8 1465 259 25 24 24 chr11 115377447 115377488 -6466368 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 8 1465 1075 78 50 0 chr11 115377489 115377630 -6466226 - B1_Mus1 SINE Alu 0 148 1 8 1465 589 129 0 26 chr11 115377651 115377790 -6466066 - B1_Mur4 SINE Alu 0 150 19 8 1465 348 192 99 172 chr11 115377789 115377855 -6466001 - B1_Mur4 SINE Alu 0 150 89 8 1465 1536 39 39 0 chr11 115377855 115378036 -6465820 - B2_Mm1t SINE B2 -4 189 2 8 1465 362 253 110 0 chr11 115378036 115378127 -6465729 - B1_Mur1 SINE Alu -46 103 3 8 1465 443 166 197 0 chr11 115378159 115378257 -6465599 + B1_Mur4 SINE Alu 4 119 -1 8 1465 25 0 0 0 chr11 115378258 115378283 -6465573 + AT_rich Low_complexity Low_complexity 1 25 0 8 1465 593 291 31 31 chr11 115379001 115379164 -6464692 + RSINE1 SINE B4 1 163 -2 8 1465 307 256 177 54 chr11 115379009 115379183 -6464673 + B3 SINE B2 7 203 -13 8 1465 720 177 57 0 chr11 115379183 115379324 -6464532 + B1_Mur3 SINE Alu 1 149 0 8 1465 307 256 177 54 chr11 115379324 115379335 -6464521 + B3 SINE B2 204 214 -2 8 1465 317 0 0 22 chr11 115379638 115379683 -6464173 + B1_Mur4 SINE Alu 106 149 -1 8 1465 571 178 50 25 chr11 115379748 115379869 -6463987 - B1_Mur2 SINE Alu -8 141 18 8 1465 370 167 24 49 chr11 115379946 115380028 -6463828 - PB1D9 SINE Alu -1 119 40 8 1465 225 200 143 95 chr11 115379955 115380060 -6463796 - ID_B1 SINE B4 -7 217 108 8 1465 300 78 134 45 chr11 115380058 115380125 -6463731 - B1_Mur3 SINE Alu 0 149 77 8 1465 546 137 274 0 chr11 115380612 115380714 -6463142 - B1_Mus1 SINE Alu -6 142 13 8 1465 1235 61 0 0 chr11 115380714 115380861 -6462995 + B1_Mus2 SINE Alu 1 147 0 8 1465 601 241 150 12 chr11 115380948 115380959 -6462897 - B3 SINE B2 -1 215 206 8 1465 468 0 0 0 chr11 115380959 115381011 -6462845 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 8 1465 601 241 150 12 chr11 115381011 115381159 -6462697 - B3 SINE B2 -11 205 34 8 1465 752 255 45 15 chr11 115381173 115381372 -6462484 + B3 SINE B2 11 215 -1 8 1465 626 142 242 0 chr11 115381373 115381493 -6462363 + B1_Mur4 SINE Alu 2 150 0 8 1465 220 270 0 0 chr11 115381493 115381567 -6462289 + A-rich Low_complexity Low_complexity 1 74 0 8 1465 343 269 43 116 chr11 115381939 115382103 -6461753 - B4A SINE B4 -131 161 10 8 1465 226 103 49 49 chr11 115382263 115382304 -6461552 + PB1D7 SINE Alu 14 54 -66 8 1465 1216 195 333 8 chr11 115382296 115382683 -6461173 + RMER15 LTR ERVL 6 518 -57 8 1465 316 173 84 24 chr11 115382713 115382796 -6461060 + B1_Mur1 SINE Alu 52 139 -10 8 1465 332 362 52 67 chr11 115382831 115382865 -6460991 + ID SINE ID 2 32 -192 8 1465 1591 38 11 0 chr11 115382865 115383049 -6460807 - B2_Mm1a SINE B2 -6 187 2 8 1465 332 362 52 67 chr11 115383049 115383224 -6460632 + ID_B1 SINE B4 33 207 -17 8 1465 996 103 20 20 chr11 115383450 115383598 -6460258 + B1_Mus1 SINE Alu 1 148 0 8 1465 246 194 151 14 chr11 115383759 115383832 -6460024 + B2_Mm1t SINE B2 2 84 -109 8 1465 492 276 67 0 chr11 115384067 115384201 -6459655 - B1_Mur1 SINE Alu -6 143 1 8 1465 839 209 0 0 chr11 115384222 115384370 -6459486 - B1_Mur2 SINE Alu 0 149 2 8 1465 271 232 0 68 chr11 115385489 115385563 -6458293 + RLTR25A LTR ERVK 501 569 -534 8 1465 414 123 28 33 chr11 115385507 115385625 -6458231 + B1_Mus1 SINE Alu 38 148 -1 8 1465 769 113 105 0 chr11 115385726 115385850 -6458006 + B1_Mus2 SINE Alu 1 137 -10 8 1465 218 32 32 0 chr11 115385850 115385881 -6457975 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1465 244 188 130 0 chr11 115385919 115385988 -6457868 + PB1D9 SINE Alu 43 120 0 8 1465 298 220 0 17 chr11 115386032 115386092 -6457764 - B1_Mm SINE Alu -41 106 48 8 1465 356 292 41 62 chr11 115386186 115386332 -6457524 + RSINE1 SINE B4 4 146 -19 8 1465 359 244 65 32 chr11 115386360 115386453 -6457403 + ID_B1 SINE B4 107 202 -22 8 1465 210 234 196 31 chr11 115386778 115386875 -6456981 - B1F SINE Alu -34 115 3 8 1465 288 197 130 13 chr11 115386808 115386885 -6456971 - MT2B LTR ERVL -361 240 155 8 1465 732 177 49 14 chr11 115386896 115387039 -6456817 - B1_Mur4 SINE Alu -1 149 2 8 1465 437 220 95 0 chr11 115387329 115387436 -6456420 - B1F2 SINE Alu -4 116 1 8 1465 381 237 19 67 chr11 115387470 115387574 -6456282 - B3 SINE B2 -107 109 11 8 1465 769 200 5 103 chr11 115387589 115387729 -6456127 - B2_Mm2 SINE B2 -29 166 27 8 1465 1423 84 11 0 chr11 115387729 115387919 -6455937 - B2_Mm1t SINE B2 0 193 2 8 1465 769 200 5 103 chr11 115387919 115387962 -6455894 - B2_Mm2 SINE B2 -169 26 1 8 1465 517 215 160 8 chr11 115387978 115388136 -6455720 - B3 SINE B2 -8 187 15 8 1465 460 250 9 37 chr11 115388258 115388366 -6455490 - B1_Mus2 SINE Alu -42 105 1 8 1465 322 319 21 0 chr11 115388635 115388729 -6455127 + PB1D9 SINE Alu 25 120 0 8 1465 931 195 10 51 chr11 115388984 115389179 -6454677 + B3A SINE B2 8 194 -4 8 1465 1155 75 0 0 chr11 115389318 115389465 -6454391 - B1_Mus1 SINE Alu 0 148 2 8 1465 1424 73 11 0 chr11 115389547 115389738 -6454118 + B2_Mm1t SINE B2 1 193 0 8 1465 189 0 0 0 chr11 115389738 115389759 -6454097 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 8 1465 1370 80 26 5 chr11 115389766 115389955 -6453901 + B2_Mm2 SINE B2 1 193 -2 8 1465 593 114 191 24 chr11 115389993 115390119 -6453737 - B1_Mus1 SINE Alu 0 148 2 8 1465 23 33 0 0 chr11 115390120 115390150 -6453706 + AT_rich Low_complexity Low_complexity 1 30 0 8 1465 1450 68 5 25 chr11 115390327 115390524 -6453332 - B2_Mm1a SINE B2 0 193 1 8 1465 477 297 62 37 chr11 115390528 115390689 -6453167 + ID_B1 SINE B4 29 193 -31 8 1465 237 328 50 41 chr11 115390606 115390727 -6453129 + B1F SINE Alu 28 149 0 8 1465 613 229 100 11 chr11 115390788 115390978 -6452878 + B3 SINE B2 3 209 -7 8 1465 964 91 76 0 chr11 115391003 115391135 -6452721 + B1_Mus2 SINE Alu 4 145 -2 8 1465 646 140 42 50 chr11 115391291 115391411 -6452445 + B1_Mur4 SINE Alu 27 145 -5 8 1465 325 228 84 32 chr11 115391502 115391597 -6452259 + B4A SINE B4 191 290 -2 8 1465 1300 20 0 0 chr11 115391968 115392115 -6451741 + B1_Mm SINE Alu 1 147 0 8 1465 192 77 0 0 chr11 115392115 115392141 -6451715 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1465 1178 28 21 0 chr11 115392151 115392293 -6451563 + B1_Mus1 SINE Alu 4 148 0 8 1465 365 259 33 92 chr11 115392583 115392692 -6451164 + B4 SINE B4 3 219 -70 8 1465 550 175 133 0 chr11 115392692 115392815 -6451041 + B1_Mur4 SINE Alu 1 143 -7 8 1465 255 103 0 0 chr11 115392820 115392859 -6450997 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1465 258 234 239 56 chr11 115393157 115393337 -6450519 - ID_B1 SINE B4 -7 217 6 8 1465 371 240 82 0 chr11 115393395 115393500 -6450356 - B3 SINE B2 -66 132 8 8 1465 421 266 92 0 chr11 115393507 115393616 -6450240 - PB1D9 SINE Alu 0 120 2 8 1465 257 298 0 0 chr11 115393682 115393739 -6450117 + ID4_ SINE ID 26 82 -1 8 1465 535 197 168 30 chr11 115393801 115393932 -6449924 - B1_Mur4 SINE Alu 0 150 2 8 1465 211 288 68 0 chr11 115393948 115394007 -6449849 - B1F SINE Alu -86 63 1 8 1465 361 253 11 63 chr11 115394015 115394126 -6449730 - PB1D10 SINE Alu -1 116 6 8 1465 402 111 32 10 chr11 115394174 115394277 -6449579 + B1_Mus2 SINE Alu 1 100 -17 8 1465 378 308 0 0 chr11 115394642 115394658 -6449198 + B4A SINE B4 78 165 -124 8 1465 501 153 0 0 chr11 115394658 115394730 -6449126 + B1_Mur4 SINE Alu 10 81 -69 8 1465 247 270 12 108 chr11 115395066 115395149 -6448707 + 4.5SRNA scRNA scRNA 14 88 -6 8 1465 355 196 38 9 chr11 115395092 115395188 -6448668 + B1F2 SINE Alu 35 129 -18 8 1465 50 95 0 0 chr11 115397093 115397241 -6446615 + GC_rich Low_complexity Low_complexity 1 148 0 8 1465 223 339 107 6 chr11 115398412 115398590 -6445266 + L2 LINE L2 1865 2060 -1359 8 1465 222 62 0 0 chr11 115398731 115398763 -6445093 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1465 1092 78 0 0 chr11 115398763 115398905 -6444951 - B1_Mus1 SINE Alu 0 148 7 8 1465 415 269 8 92 chr11 115398808 115398939 -6444917 - MT2B LTR ERVL -344 257 138 8 1465 825 151 0 35 chr11 115399028 115399172 -6444684 + B1_Mus2 SINE Alu 9 147 0 8 1465 262 89 0 0 chr11 115399189 115399234 -6444622 + B1_Mus2 SINE Alu 101 145 -2 8 1465 294 29 0 0 chr11 115399234 115399269 -6444587 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1465 386 242 123 16 chr11 115399295 115399417 -6444439 + B1_Mur2 SINE Alu 2 136 -13 9 1465 365 337 10 0 chr11 115399421 115399522 -6444334 - RSINE1 SINE B4 -29 136 35 9 1465 897 89 8 0 chr11 115399566 115399690 -6444166 + B2_Mm1t SINE B2 62 186 -7 9 1465 693 58 0 0 chr11 115399726 115399813 -6444043 - B2_Mm2 SINE B2 -108 87 1 9 1465 482 184 19 28 chr11 115399902 115400008 -6443848 + PB1D9 SINE Alu 2 106 -14 9 1465 2299 176 79 31 chr11 115400011 115400443 -6443413 + RLTR20B2 LTR ERVK 8 463 -97 9 1465 207 69 0 0 chr11 115400443 115400472 -6443384 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1465 2299 176 79 31 chr11 115400472 115400560 -6443296 + RLTR20B2 LTR ERVK 464 552 -8 9 1465 1616 37 5 0 chr11 115400593 115400784 -6443072 + B2_Mm1t SINE B2 2 193 0 9 1465 1146 45 0 0 chr11 115400814 115400948 -6442908 + B1_Mm SINE Alu 1 134 -13 9 1465 185 0 0 39 chr11 115400948 115400974 -6442882 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1465 292 198 326 0 chr11 115401041 115401127 -6442729 + B1_Mur1 SINE Alu 18 131 -18 9 1465 261 189 51 51 chr11 115401148 115401226 -6442630 + RLTR25B LTR ERVK 416 493 -535 9 1465 422 190 0 23 chr11 115401167 115401253 -6442603 + PB1D9 SINE Alu 37 120 0 9 1465 1310 100 10 21 chr11 115401268 115401462 -6442394 + B2_Mm1t SINE B2 2 193 0 9 1465 1146 45 0 0 chr11 115401517 115401651 -6442205 + B1_Mm SINE Alu 1 134 -13 9 1465 185 0 0 39 chr11 115401651 115401677 -6442179 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1465 1646 42 0 0 chr11 115401841 115402032 -6441824 - B2_Mm1a SINE B2 -1 192 2 9 1465 906 156 77 6 chr11 115402083 115402264 -6441592 - B2_Mm2 SINE B2 -1 194 1 9 1465 1372 94 5 20 chr11 115402274 115402469 -6441387 - B2_Mm2 SINE B2 -2 193 2 9 1465 204 74 35 53 chr11 115402487 115402514 -6441342 + T-rich Low_complexity Low_complexity 31 59 0 9 1465 1099 75 7 7 chr11 115402514 115402661 -6441195 - B1_Mm SINE Alu 0 147 1 9 1465 204 74 35 53 chr11 115402661 115402690 -6441166 + T-rich Low_complexity Low_complexity 4 30 0 9 1465 563 158 93 70 chr11 115402691 115402704 -6441152 - B1_Mus1 SINE Alu -1 147 136 9 1465 1103 76 14 0 chr11 115402704 115402849 -6441007 - B1_Mus1 SINE Alu 0 148 2 9 1465 563 158 93 70 chr11 115402849 115402964 -6440892 - B1_Mus1 SINE Alu -13 135 16 9 1465 343 181 0 153 chr11 115402890 115402975 -6440881 - MT2B LTR ERVL -362 239 168 9 1465 550 212 159 29 chr11 115403404 115403574 -6440282 + B3 SINE B2 1 192 -24 9 1465 342 0 0 0 chr11 115403580 115403618 -6440238 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1465 366 267 66 8 chr11 115403644 115403765 -6440091 + B1F SINE Alu 22 149 0 9 1465 463 285 63 24 chr11 115403882 115404008 -6439848 + RSINE1 SINE B4 4 134 -31 9 1465 210 143 0 0 chr11 115404036 115404071 -6439785 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1465 450 0 0 0 chr11 115404320 115404370 -6439486 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1465 1484 229 179 42 chr11 115404493 115405045 -6438811 - RMER17C-int LTR ERVK 0 3238 2611 9 1465 537 108 0 13 chr11 115405142 115405217 -6438639 + LSU-rRNA_Hsa rRNA rRNA 4202 4275 -760 9 1465 839 141 0 190 chr11 115405273 115405536 -6438320 - RLTR19-int LTR ERVK -2461 3676 3464 9 1465 314 196 122 10 chr11 115405725 115405823 -6438033 - MurSatRep1 Unknown Unknown -1409 728 620 9 1465 464 214 40 33 chr11 115405918 115406068 -6437788 - Lx7 LINE L1 -502 7194 7044 9 1465 250 202 62 25 chr11 115406229 115406310 -6437546 - MYSERV-int LTR ERVK -190 6360 6277 9 1465 370 188 0 0 chr11 115406605 115406674 -6437182 - MYSERV6-int LTR ERVK -279 8680 8612 9 1465 1056 64 35 0 chr11 115406674 115406815 -6437041 + RMER19A LTR ERVK 592 737 0 9 1465 352 186 29 0 chr11 115406842 115406912 -6436944 - RLTR19-int LTR ERVK -3719 2418 2347 9 1465 4395 145 58 108 chr11 115406909 115407609 -6436247 - MYSERV6-int LTR ERVK -3268 5691 4996 9 1465 224 143 0 0 chr11 115407609 115407644 -6436212 - B1_Mur4 SINE Alu -115 35 1 9 1465 4395 145 58 108 chr11 115407644 115407729 -6436127 - MYSERV6-int LTR ERVK -3268 4995 4910 9 1465 207 0 0 0 chr11 115407729 115407752 -6436104 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1465 1220 48 7 0 chr11 115407754 115407900 -6435956 - B1_Mm SINE Alu 0 147 1 9 1465 4395 145 58 108 chr11 115407900 115408052 -6435804 - MYSERV6-int LTR ERVK -4050 4909 4767 9 1465 934 133 139 0 chr11 115408052 115408217 -6435639 + B2_Mm2 SINE B2 1 188 -7 9 1465 4395 145 58 108 chr11 115408217 115408248 -6435608 - MYSERV6-int LTR ERVK -4193 4766 4736 9 1465 1331 105 17 0 chr11 115408248 115408429 -6435427 + B2_Mm2 SINE B2 1 184 -11 9 1465 504 146 0 0 chr11 115408430 115408519 -6435337 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 9 1465 875 170 30 18 chr11 115408601 115408769 -6435087 - MYSERV6-int LTR ERVK -6900 2059 1890 9 1465 351 0 0 0 chr11 115408770 115408809 -6435047 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 9 1465 1004 113 7 0 chr11 115408811 115408952 -6434904 - B1_Mus1 SINE Alu -6 142 1 9 1465 1131 147 35 0 chr11 115408952 115409150 -6434706 - MYSERV6-int LTR ERVK -7240 1719 1515 9 1465 2134 98 42 7 chr11 115409150 115409457 -6434399 - ORR1A3 LTR MaLR -8 318 1 9 1465 1738 149 96 70 chr11 115409459 115409583 -6434273 - MYSERV6-int LTR ERVK -7438 1521 1391 9 1465 1167 75 0 7 chr11 115409583 115409731 -6434125 + B1_Mus2 SINE Alu 1 147 0 9 1465 1738 149 96 70 chr11 115409731 115409814 -6434042 - MYSERV6-int LTR ERVK -7569 1390 1317 9 1465 1326 52 98 0 chr11 115409814 115409988 -6433868 + B2_Mm2 SINE B2 1 191 -4 9 1465 1738 149 96 70 chr11 115409988 115410176 -6433680 - MYSERV6-int LTR ERVK -7643 1316 1115 9 1465 1244 54 0 0 chr11 115410198 115410346 -6433510 - B1_Mus1 SINE Alu 0 148 1 9 1465 4339 177 71 28 chr11 115410348 115411135 -6432721 - MYSERV6-int LTR ERVK -8014 945 119 9 1465 1240 185 67 59 chr11 115411135 115411491 -6432365 - RLTR15 LTR ERVK 0 359 1 9 1465 4339 177 71 28 chr11 115411491 115411608 -6432248 - MYSERV6-int LTR ERVK -8841 118 2 9 1465 878 172 64 0 chr11 115411621 115411778 -6432078 - RMER6B LTR ERVK -2 459 293 9 1465 622 233 106 25 chr11 115411830 115412069 -6431787 - RLTR42-int LTR ERVK -3417 2105 1870 9 1465 1375 121 5 37 chr11 115412531 115412746 -6431110 + ORR1A2 LTR MaLR 1 208 -119 9 1465 819 94 26 0 chr11 115412741 115412858 -6430998 + B2_Mm2 SINE B2 68 187 -8 9 1465 1173 75 0 0 chr11 115412867 115413013 -6430843 + B1_Mm SINE Alu 2 147 0 9 1465 207 0 0 0 chr11 115413013 115413036 -6430820 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1465 1212 112 0 0 chr11 115413042 115413211 -6430645 + B2_Mm2 SINE B2 1 169 -26 9 1465 391 95 244 95 chr11 115413266 115413392 -6430464 + B2_Mm2 SINE B2 46 195 0 9 1465 454 224 73 104 chr11 115413572 115413736 -6430120 + MT2B LTR ERVL 99 257 -344 9 1465 980 138 0 0 chr11 115413643 115413781 -6430075 + B1_Mus1 SINE Alu 11 148 0 9 1465 494 240 0 19 chr11 115413895 115414001 -6429855 + PB1D9 SINE Alu 16 119 -1 9 1465 334 243 29 0 chr11 115413990 115414060 -6429796 + ID_B1 SINE B4 134 205 -19 9 1465 355 243 16 105 chr11 115414125 115414249 -6429607 + PB1D10 SINE Alu 5 117 0 9 1465 612 170 0 0 chr11 115414294 115414388 -6429468 - B2_Mm2 SINE B2 -66 129 36 9 1465 931 52 0 0 chr11 115414383 115414499 -6429357 - B1_Mus1 SINE Alu -31 117 2 9 1465 804 223 79 11 chr11 115414539 115414716 -6429140 - B3 SINE B2 -27 189 1 9 1465 563 302 0 0 chr11 115414716 115414841 -6429015 + B3 SINE B2 33 157 -59 9 1465 618 95 0 0 chr11 115414877 115414972 -6428884 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 1465 246 302 130 32 chr11 115415112 115415235 -6428621 + B1F SINE Alu 3 137 -12 9 1465 771 75 0 0 chr11 115415244 115415351 -6428505 + (TA)n Simple_repeat Simple_repeat 1 107 0 9 1465 543 182 7 26 chr11 115415370 115415522 -6428334 + (CATA)n Simple_repeat Simple_repeat 2 150 0 9 1465 385 138 25 0 chr11 115415541 115415621 -6428235 + (CATA)n Simple_repeat Simple_repeat 1 82 0 9 1465 1605 152 11 19 chr11 115415689 115415957 -6427899 + RMER4A LTR ERVK 6 271 -195 9 1465 1181 44 0 0 chr11 115415974 115416111 -6427745 - B1_Mus1 SINE Alu -10 138 2 9 1465 1109 181 29 0 chr11 115416112 115416322 -6427534 + RMER4A LTR ERVK 251 466 0 9 1465 330 19 19 0 chr11 115416322 115416374 -6427482 - B2_Mm2 SINE B2 -6 189 137 9 1465 1301 99 0 0 chr11 115416440 115416611 -6427245 - B2_Mm2 SINE B2 -24 171 1 9 1465 464 0 18 0 chr11 115416635 115416691 -6427165 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1465 362 269 0 216 chr11 115416691 115416862 -6426994 - B1_Mus2 SINE Alu -12 135 2 9 1465 602 258 64 45 chr11 115417166 115417374 -6426482 + B3A SINE B2 3 216 0 9 1465 518 286 48 79 chr11 115417634 115417862 -6425994 - B4A SINE B4 -71 221 1 9 1465 698 192 23 6 chr11 115417906 115418047 -6425809 - B1_Mus2 SINE Alu -5 144 2 9 1465 382 290 72 57 chr11 115418075 115418269 -6425587 - B3A SINE B2 0 198 2 9 1465 365 294 0 52 chr11 115418311 115418426 -6425430 + PB1D10 SINE Alu 8 116 -1 9 1465 499 273 91 0 chr11 115418427 115418559 -6425297 + RSINE1 SINE B4 5 148 -17 9 1465 1433 54 32 0 chr11 115418593 115418779 -6425077 + B2_Mm1a SINE B2 2 193 0 9 1465 1216 62 0 0 chr11 115418789 115418935 -6424921 + B1_Mm SINE Alu 2 147 0 9 1465 256 259 47 40 chr11 115418948 115419097 -6424759 + ORR1B1-int LTR MaLR 605 754 -755 9 1465 815 101 0 40 chr11 115418989 115419113 -6424743 + B1_Mus1 SINE Alu 6 124 -24 9 1465 234 0 0 0 chr11 115419119 115419145 -6424711 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1465 559 243 113 46 chr11 115419177 115419371 -6424485 + B3 SINE B2 3 209 -7 9 1465 710 197 0 0 chr11 115419494 115419611 -6424245 + B1_Mur2 SINE Alu 22 138 -11 9 1465 411 21 0 0 chr11 115419624 115419672 -6424184 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 9 1465 468 0 0 0 chr11 115419672 115419723 -6424133 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 9 1465 1853 124 9 60 chr11 115419723 115420058 -6423798 + RLTRETN_Mm LTR ERVK 4 321 -1 9 1465 339 25 0 0 chr11 115420058 115420098 -6423758 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 9 1465 797 201 7 14 chr11 115420098 115420244 -6423612 - B1_Mur3 SINE Alu -3 146 2 9 1465 401 292 12 104 chr11 115420101 115420265 -6423591 - ID_B1 SINE B4 -6 218 70 9 1465 485 32 16 0 chr11 115420266 115420329 -6423527 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1465 578 261 45 25 chr11 115420333 115420490 -6423366 - B3A SINE B2 -38 160 1 1 1465 622 236 0 48 chr11 115420551 115420698 -6423158 + B1_Mm SINE Alu 3 142 -5 1 1465 582 286 7 67 chr11 115420715 115420756 -6423100 + B3A SINE B2 1 35 -163 1 1465 1198 106 78 0 chr11 115420756 115420777 -6423079 - B2_Mm1t SINE B2 0 193 173 1 1465 360 0 0 0 chr11 115420777 115420817 -6423039 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1465 1198 106 78 0 chr11 115420817 115420974 -6422882 - B2_Mm1t SINE B2 -21 172 3 1 1465 582 286 8 67 chr11 115420974 115421100 -6422756 + B3A SINE B2 36 159 -57 1 1465 1219 62 0 0 chr11 115421101 115421247 -6422609 + B1_Mus1 SINE Alu 2 147 -1 1 1465 215 347 12 85 chr11 115421335 115421417 -6422439 - PB1 SINE Alu -51 76 1 1 1465 1363 57 51 6 chr11 115421423 115421601 -6422255 - B2_Mm2 SINE B2 -8 187 2 1 1465 1114 80 0 0 chr11 115421656 115421794 -6422062 + B1_Mus2 SINE Alu 2 139 -8 1 1465 266 0 0 29 chr11 115421794 115421829 -6422027 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1465 1517 48 27 0 chr11 115421835 115422021 -6421835 + B2_Mm1t SINE B2 2 192 -1 1 1465 378 282 192 0 chr11 115422126 115422303 -6421553 - B3 SINE B2 -3 213 3 1 1465 1092 78 28 0 chr11 115422401 115422543 -6421313 + B1_Mm SINE Alu 2 147 0 1 1465 198 219 0 0 chr11 115422663 115422727 -6421129 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1465 21 0 0 0 chr11 115422729 115422750 -6421106 + GC_rich Low_complexity Low_complexity 1 21 0 1 1465 322 370 0 0 chr11 115422769 115422877 -6420979 + B1F SINE Alu 1 108 -41 1 1465 541 221 10 0 chr11 115422944 115423048 -6420808 - PB1D10 SINE Alu -12 105 1 1 1465 1096 58 58 0 chr11 115423061 115423200 -6420656 - B1_Mus2 SINE Alu 0 147 1 1 1465 2966 86 64 5 chr11 115423261 115423680 -6420176 + L1Md_F2 LINE L1 6127 6570 -12 1 1465 1144 129 23 0 chr11 115423717 115423888 -6419968 + B2_Mm2 SINE B2 2 176 -19 1 1465 717 231 0 0 chr11 115423896 115424026 -6419830 + B3 SINE B2 1 130 -86 1 1465 1183 98 66 0 chr11 115424075 115424258 -6419598 + B2_Mm2 SINE B2 1 195 0 1 1465 832 179 14 0 chr11 115424266 115424406 -6419450 + B1_Mur4 SINE Alu 3 144 -6 1 1465 331 100 0 0 chr11 115424416 115424466 -6419390 + B1_Mus2 SINE Alu 2 51 -96 1 1465 239 53 0 50 chr11 115424463 115424494 -6419362 + B1_Mm SINE Alu 110 140 -7 1 1465 284 175 14 87 chr11 115424466 115424485 -6419371 + B4A SINE B4 87 150 -142 1 1465 336 24 0 0 chr11 115424494 115424535 -6419321 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1465 1291 50 0 0 chr11 115424595 115424755 -6419101 + B2_Mm2 SINE B2 2 161 -34 1 1465 809 197 118 10 chr11 115424785 115424980 -6418876 - B3 SINE B2 0 216 1 1 1465 443 336 0 7 chr11 115425057 115425195 -6418661 - ID_B1 SINE B4 -2 222 86 1 1465 358 329 56 14 chr11 115426662 115426804 -6417052 - B1F1 SINE Alu 0 149 2 1 1465 766 239 16 42 chr11 115426812 115427004 -6416852 - B3 SINE B2 -3 213 27 1 1465 594 198 50 0 chr11 115427013 115427134 -6416722 - B1_Mus2 SINE Alu 0 147 21 1 1465 773 174 7 53 chr11 115427220 115427372 -6416484 + B1_Mus2 SINE Alu 3 147 0 1 1465 228 328 60 0 chr11 115427559 115427626 -6416230 + ID4 SINE ID 13 83 0 1 1465 218 333 39 100 chr11 115427626 115427689 -6416167 + ID_B1 SINE B4 13 134 -90 1 1465 22 0 0 0 chr11 115428306 115428328 -6415528 + AT_rich Low_complexity Low_complexity 1 22 0 1 1465 318 239 95 32 chr11 115428393 115428488 -6415368 + B1_Mur1 SINE Alu 48 148 -1 1 1465 335 331 54 20 chr11 115428785 115428933 -6414923 - ID_B1 SINE B4 -22 202 50 1 1465 382 224 13 0 chr11 115428935 115429011 -6414845 - MTC LTR MaLR -149 272 196 1 1465 1054 66 0 0 chr11 115429043 115429180 -6414676 - B2_Mm2 SINE B2 -58 137 1 1 1465 386 230 210 0 chr11 115429180 115429279 -6414577 - MTC LTR MaLR -211 210 91 1 1465 721 292 12 12 chr11 115429318 115429491 -6414365 - B3A SINE B2 -7 191 19 1 1465 403 326 50 40 chr11 115430746 115430947 -6412909 - B4A SINE B4 -86 206 4 1 1465 506 197 213 0 chr11 115431782 115431904 -6411952 + URR1A DNA MER1_type 79 226 0 1 1465 623 174 141 0 chr11 115432035 115432156 -6411700 - B1_Mur4 SINE Alu -8 142 5 1 1465 360 53 16 95 chr11 115432158 115432221 -6411635 - B1_Mur4 SINE Alu -2 148 91 1 1465 513 197 167 25 chr11 115432217 115432337 -6411519 - B1F2 SINE Alu 0 149 13 1 1465 497 205 0 0 chr11 115432454 115432537 -6411319 + ID4 SINE ID 1 83 0 1 1465 205 330 11 32 chr11 115432612 115432706 -6411150 - L2 LINE L2 -982 2437 2346 1 1465 223 301 69 101 chr11 115432775 115432867 -6410989 - B2_Mm2 SINE B2 -35 160 40 1 1465 225 182 45 0 chr11 115432867 115432911 -6410945 - ID4 SINE ID -10 73 28 1 1465 223 301 69 101 chr11 115432911 115432934 -6410922 - B2_Mm2 SINE B2 -35 39 7 1 1465 333 307 26 17 chr11 115432984 115433100 -6410756 + PB1 SINE Alu 1 117 -10 1 1465 806 139 51 7 chr11 115433146 115433284 -6410572 + B1_Mus1 SINE Alu 4 147 -1 1 1465 548 263 112 15 chr11 115433361 115433377 -6410479 - B3 SINE B2 0 216 201 1 1465 1275 27 0 0 chr11 115433377 115433523 -6410333 - B1_Mus2 SINE Alu 0 147 2 1 1465 548 263 112 15 chr11 115433523 115433703 -6410153 - B3 SINE B2 -16 200 1 1 1465 325 261 258 11 chr11 115433726 115433904 -6409952 - ID_B1 SINE B4 -1 223 2 1 1465 331 280 120 0 chr11 115433993 115434093 -6409763 - PB1D7 SINE Alu -8 112 1 1 1465 189 0 0 0 chr11 115434100 115434121 -6409735 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1465 288 102 0 0 chr11 115434121 115434170 -6409686 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1465 379 285 69 0 chr11 115434404 115434534 -6409322 - B4 SINE B4 -152 140 2 1 1465 267 295 11 64 chr11 115434596 115434690 -6409166 + B3A SINE B2 1 89 -109 1 1465 186 118 0 0 chr11 115434734 115434768 -6409088 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1 1465 957 174 0 0 chr11 115434773 115434922 -6408934 - B1_Mur3 SINE Alu 0 149 1 1 1465 699 186 42 21 chr11 115434985 115435128 -6408728 - B1_Mur3 SINE Alu -3 146 1 1 1465 252 333 63 29 chr11 115435131 115435338 -6408518 - Lx8 LINE L1 -38 7435 7222 1 1465 651 169 52 84 chr11 115435512 115435667 -6408189 - B1_Mur4 SINE Alu 0 150 1 1 1465 1233 77 64 27 chr11 115435682 115435869 -6407987 - B2_Mm2 SINE B2 0 195 2 1 1465 1169 137 103 0 chr11 115435880 115436084 -6407772 - MTC LTR MaLR -1 420 196 1 1465 1037 128 24 6 chr11 115436083 115436248 -6407608 - B2_Mm2 SINE B2 0 195 28 1 1465 1350 105 16 0 chr11 115436255 115436446 -6407410 - B2_Mm2 SINE B2 0 195 2 1 1465 521 144 167 0 chr11 115436446 115436536 -6407320 - MTC LTR MaLR -211 210 106 1 1465 12593 78 4 0 chr11 115436537 115438976 -6404880 + L1_Mus1 LINE L1 4115 6564 -3 1 1465 441 259 34 8 chr11 115438997 115439114 -6404742 - MTC LTR MaLR -301 120 1 1 1465 248 182 36 0 chr11 115440232 115440287 -6403569 - B1_Mur2 SINE Alu -5 144 88 1 1465 597 94 0 10 chr11 115440287 115440384 -6403472 + L1_Mus3 LINE L1 6535 6630 -8 1 1465 229 231 70 88 chr11 115440384 115440442 -6403414 - B1F1 SINE Alu -62 87 33 1 1465 227 167 20 20 chr11 115440734 115440783 -6403073 - B4 SINE B4 -240 52 4 1 1465 254 264 0 0 chr11 115440882 115440935 -6402921 - MLT1B LTR MaLR -57 333 281 1 1465 1277 34 0 0 chr11 115441312 115441460 -6402396 - B1_Mus1 SINE Alu 0 148 1 1 1465 1193 97 43 5 chr11 115441529 115441716 -6402140 - B2_Mm2 SINE B2 0 195 2 1 1465 204 239 134 0 chr11 115442745 115442812 -6401044 - L2 LINE L2 -3193 226 151 1 1465 289 297 171 0 chr11 115443528 115443639 -6400217 - B1F2 SINE Alu -2 147 18 1 1465 526 278 104 10 chr11 115443786 115443979 -6399877 - B3 SINE B2 -2 214 4 1 1465 184 250 45 30 chr11 115447344 115447410 -6396446 - L3 LINE CR1 -1927 2562 2496 1 1465 728 230 40 65 chr11 115447972 115448172 -6395684 + B3A SINE B2 2 196 -2 1 1465 3486 28 5 0 chr11 115450502 115450896 -6392960 + MTA_Mm LTR MaLR 1 396 0 1 1465 769 289 106 22 chr11 115451091 115451413 -6392443 + Lx6 LINE L1 7086 7434 -26 1 1465 342 226 75 47 chr11 115452385 115452492 -6391364 + B1F SINE Alu 11 120 0 1 1465 1281 76 42 21 chr11 115453927 115454116 -6389740 + B2_Mm2 SINE B2 2 194 -1 1 1465 247 120 132 0 chr11 115454497 115454553 -6389303 + B1_Mm SINE Alu 74 150 0 1 1465 23 33 0 0 chr11 115454595 115454625 -6389231 + AT_rich Low_complexity Low_complexity 1 30 0 1 1465 1123 52 0 0 chr11 115454635 115454769 -6389087 + B1_Mus2 SINE Alu 1 134 -13 1 1465 183 42 0 0 chr11 115454769 115454793 -6389063 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1465 403 289 0 37 chr11 115454821 115454929 -6388927 - B3 SINE B2 -109 107 4 1 1465 431 301 84 15 chr11 115454953 115455155 -6388701 - MER20 DNA MER1_type 0 219 4 1 1465 234 316 0 0 chr11 115455157 115455214 -6388642 + ID_B1 SINE B4 89 145 -79 1 1465 482 84 14 0 chr11 115455235 115455306 -6388550 + B2_Mm1t SINE B2 2 73 -120 1 1465 873 25 16 16 chr11 115455297 115455411 -6388445 + B1_Mus1 SINE Alu 28 142 -6 1 1465 183 42 0 0 chr11 115455411 115455435 -6388421 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1465 202 268 0 0 chr11 115456157 115456213 -6387643 + (CTCG)n Simple_repeat Simple_repeat 1 56 0 1 1465 1004 93 43 0 chr11 115456425 115456564 -6387292 + B1_Mus2 SINE Alu 1 145 -2 1 1465 1228 101 6 27 chr11 115456600 115456775 -6387081 + B2_Mm2 SINE B2 2 173 -22 1 1465 180 0 0 0 chr11 115456775 115456795 -6387061 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1465 303 93 0 0 chr11 115456833 115456876 -6386980 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1465 721 117 54 78 chr11 115456940 115457107 -6386749 + B2_Mm2 SINE B2 32 194 -1 1 1465 2035 71 11 3 chr11 115457160 115457443 -6386413 + ORR1A2 LTR MaLR 1 285 -42 1 1465 1200 61 7 0 chr11 115457443 115457590 -6386266 + B1_Mus1 SINE Alu 1 148 0 1 1465 1724 105 63 130 chr11 115457590 115457668 -6386188 + ORR1A2 LTR MaLR 296 338 -8 1 1465 214 219 0 0 chr11 115458400 115458441 -6385415 - RSINE1 SINE B4 -114 51 11 1 1465 630 132 57 0 chr11 115458568 115458674 -6385182 + PB1D9 SINE Alu 9 120 0 1 1465 245 245 0 19 chr11 115458744 115458798 -6385058 + B1F SINE Alu 68 120 -29 1 1465 238 320 26 13 chr11 115458798 115458810 -6385046 + ID_B1 SINE B4 167 212 -12 1 1465 1275 118 0 21 chr11 115458814 115459004 -6384852 - B2_Mm2 SINE B2 -9 186 1 1 1465 756 68 0 0 chr11 115459015 115459118 -6384738 - B1_Mm SINE Alu 0 147 45 1 1465 282 253 39 26 chr11 115459055 115459132 -6384724 - RLTR25A LTR ERVK -522 581 504 1 1465 357 194 0 16 chr11 115459150 115459213 -6384643 + ID4_ SINE ID 3 64 -19 1 1465 1401 108 0 0 chr11 115459424 115459618 -6384238 + B2_Mm2 SINE B2 2 195 0 1 1465 1136 202 94 4 chr11 115459723 115460010 -6383846 + ORR1D1 LTR MaLR 53 368 -6 1 1465 368 239 220 0 chr11 115460146 115460255 -6383601 - ID_B1 SINE B4 -1 223 91 1 1465 631 170 37 13 chr11 115460257 115460399 -6383457 + B1_Mus2 SINE Alu 9 147 0 1 1465 879 145 13 40 chr11 115460467 115460618 -6383238 + B1_Mur3 SINE Alu 2 148 -1 1 1465 1561 58 5 0 chr11 115460822 115461013 -6382843 - B2_Mm1a SINE B2 0 193 2 1 1465 927 88 69 49 chr11 115461578 115461722 -6382134 - B1_Mus1 SINE Alu -1 147 1 1 1465 593 261 15 0 chr11 115461909 115462043 -6381813 - RSINE1 SINE B4 -19 146 11 1 1465 396 0 0 0 chr11 115462150 115462194 -6381662 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1465 201 39 0 0 chr11 115462195 115462221 -6381635 + (CG)n Simple_repeat Simple_repeat 2 27 0 1 1465 359 252 62 41 chr11 115462319 115462464 -6381392 - B1F2 SINE Alu -1 148 1 1 1465 467 198 10 10 chr11 115462969 115463066 -6380790 + U6 snRNA snRNA 1 97 -10 1 1465 923 169 14 0 chr11 115463079 115463221 -6380635 - B1_Mur3 SINE Alu -5 144 1 1 1465 299 250 67 11 chr11 115463646 115463735 -6380121 + PB1D10 SINE Alu 24 117 0 1 1465 617 108 0 0 chr11 115463968 115464061 -6379795 + B1_Mur2 SINE Alu 1 93 -56 1 1465 226 233 0 0 chr11 115464612 115464655 -6379201 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1465 393 228 144 30 chr11 115466530 115466677 -6377179 + B1_Mur2 SINE Alu 10 149 0 1 1465 302 191 48 0 chr11 115466679 115466742 -6377114 + PB1D9 SINE Alu 42 107 -13 1 1465 237 221 34 9 chr11 115466777 115466849 -6377007 + B1_Mur3 SINE Alu 53 125 -24 1 1465 1002 158 0 0 chr11 115466897 115467043 -6376813 + B1_Mur4 SINE Alu 3 148 -2 1 1465 425 273 41 0 chr11 115467107 115467228 -6376628 - ID_B1 SINE B4 -6 218 93 1 1465 1090 190 30 10 chr11 115468403 115468600 -6375256 + B3 SINE B2 3 203 -13 1 1465 260 119 0 0 chr11 115468907 115468949 -6374907 + B3 SINE B2 1 42 -174 1 1465 517 83 0 0 chr11 115468949 115469021 -6374835 + BC1_Mm scRNA scRNA 1 72 -80 1 1465 888 109 7 14 chr11 115469040 115469179 -6374677 + B2_Mm2 SINE B2 27 164 -31 1 1465 208 217 97 32 chr11 115469405 115469467 -6374389 - MIR SINE MIR -118 144 79 1 1465 677 189 42 42 chr11 115471040 115471184 -6372672 - B1_Mur3 SINE Alu -1 148 5 1 1465 224 275 114 29 chr11 115471251 115471262 -6372594 + B1F SINE Alu 31 144 -5 1 1465 291 255 117 0 chr11 115471262 115471356 -6372500 + ID_B1 SINE B4 115 219 -5 1 1465 244 295 53 71 chr11 115471354 115471467 -6372389 + B4 SINE B4 81 191 -101 1 1465 448 180 0 27 chr11 115471370 115471477 -6372379 + B1_Mur1 SINE Alu 14 141 -8 1 1465 639 295 36 10 chr11 115471675 115471867 -6371989 + B3 SINE B2 13 209 -7 1 1465 1311 94 33 0 chr11 115471872 115472053 -6371803 + B2_Mm1t SINE B2 2 188 -5 1 1465 267 227 147 49 chr11 115472079 115472181 -6371675 + PB1D9 SINE Alu 7 118 -2 1 1465 244 193 35 0 chr11 115472309 115472366 -6371490 - ID_B1 SINE B4 0 224 166 1 1465 290 286 133 9 chr11 115472384 115472497 -6371359 - B3 SINE B2 -6 210 84 1 1465 215 128 0 25 chr11 115472615 115472655 -6371201 - B3A SINE B2 -153 45 7 1 1465 257 288 55 0 chr11 115472670 115472743 -6371113 - B1F2 SINE Alu -55 94 18 1 1465 240 83 0 0 chr11 115473159 115473195 -6370661 + MTD LTR MaLR 2 37 -382 1 1465 27 0 0 0 chr11 115473855 115473882 -6369974 + GC_rich Low_complexity Low_complexity 1 27 0 1 1465 243 0 0 0 chr11 115473891 115473918 -6369938 + (CGG)n Simple_repeat Simple_repeat 3 29 0 1 1465 207 191 0 21 chr11 115473954 115474002 -6369854 + C-rich Low_complexity Low_complexity 6 52 0 1 1466 904 235 78 113 chr11 115474671 115475069 -6368787 + RMER15 LTR ERVL 30 413 -162 1 1466 2125 109 130 6 chr11 115475090 115475451 -6368405 + MTC LTR MaLR 1 406 -15 1 1466 784 217 0 0 chr11 115477559 115477702 -6366154 - B1_Mus1 SINE Alu 0 148 6 1 1466 416 237 19 171 chr11 115478043 115478201 -6365655 + B3A SINE B2 9 142 -56 1 1466 500 68 14 0 chr11 115478209 115478282 -6365574 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1466 845 204 22 22 chr11 115478297 115478482 -6365374 + B3 SINE B2 2 186 -30 1 1466 473 216 39 0 chr11 115479139 115479241 -6364615 + PB1D10 SINE Alu 9 114 -3 1 1466 1253 48 0 0 chr11 115479246 115479393 -6364463 + B1_Mus2 SINE Alu 1 147 0 1 1466 222 267 40 0 chr11 115479406 115479481 -6364375 + B1_Mus1 SINE Alu 1 78 -70 1 1466 835 238 103 5 chr11 115479481 115479675 -6364181 + B3 SINE B2 1 213 -3 1 1466 286 282 39 72 chr11 115479698 115479851 -6364005 + B1F2 SINE Alu 1 148 -1 1 1466 189 0 0 0 chr11 115480291 115480312 -6363544 + (CAGGC)n Simple_repeat Simple_repeat 4 24 0 1 1466 1233 54 0 13 chr11 115480868 115481018 -6362838 - B1_Mus1 SINE Alu 0 148 1 1 1466 1991 139 73 8 chr11 115481069 115481439 -6362417 + MTC LTR MaLR 18 411 -10 1 1466 647 254 58 0 chr11 115481435 115481608 -6362248 - B3 SINE B2 -31 185 3 1 1466 487 249 3 12 chr11 115481700 115481824 -6362032 + MTE2b LTR MaLR 263 419 0 1 1466 297 0 0 0 chr11 115482390 115482423 -6361433 + (CACG)n Simple_repeat Simple_repeat 1 33 0 1 1466 418 244 190 84 chr11 115482556 115482735 -6361121 + B3A SINE B2 1 198 0 1 1466 182 118 0 29 chr11 115482822 115482857 -6360999 + (CAG)n Simple_repeat Simple_repeat 1 34 0 1 1466 715 250 0 44 chr11 115482872 115483052 -6360804 + B4A SINE B4 61 232 -60 1 1466 766 159 7 61 chr11 115483053 115483200 -6360656 + B1_Mm SINE Alu 3 141 -6 1 1466 928 114 0 168 chr11 115483225 115483404 -6360452 + B1_Mur4 SINE Alu 1 149 -1 1 1466 214 244 0 0 chr11 115483518 115483559 -6360297 + polypurine Low_complexity Low_complexity 2 42 0 1 1466 524 268 29 0 chr11 115483588 115483726 -6360130 - B1F2 SINE Alu -7 142 1 1 1466 218 308 0 44 chr11 115484142 115484210 -6359646 + MIRb SINE MIR 120 184 -84 1 1466 310 217 0 0 chr11 115484459 115484519 -6359337 + RSINE1 SINE B4 13 72 -93 1 1466 638 241 0 28 chr11 115484523 115484664 -6359192 + B1_Mur2 SINE Alu 1 137 -12 1 1466 342 0 0 0 chr11 115484664 115484702 -6359154 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1466 893 160 13 34 chr11 115485829 115485978 -6357878 + B1_Mur4 SINE Alu 5 150 0 1 1466 440 305 72 12 chr11 115486096 115486245 -6357611 + B3A SINE B2 23 180 -18 1 1466 341 109 16 0 chr11 115486245 115486309 -6357547 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1466 440 305 72 12 chr11 115486309 115486325 -6357531 + B3A SINE B2 181 197 -1 1 1466 1070 219 5 19 chr11 115486329 115486539 -6357317 + B3 SINE B2 2 208 -8 1 1466 28 0 0 0 chr11 115486547 115486575 -6357281 + AT_rich Low_complexity Low_complexity 1 28 0 1 1466 1792 126 72 7 chr11 115486699 115486840 -6357016 + ORR1B2 LTR MaLR 1 151 -216 1 1466 207 69 0 0 chr11 115486840 115486869 -6356987 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1466 1792 126 72 7 chr11 115486869 115487031 -6356825 + ORR1B2 LTR MaLR 152 322 -45 1 1466 336 216 36 73 chr11 115487038 115487064 -6356792 + PB1D9 SINE Alu 15 37 -83 1 1466 234 0 0 0 chr11 115487064 115487090 -6356766 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1466 336 216 36 73 chr11 115487090 115487173 -6356683 + PB1D9 SINE Alu 38 120 0 1 1466 280 257 29 14 chr11 115487675 115487757 -6356099 + PB1D10 SINE Alu 28 119 -8 1 1466 286 191 191 0 chr11 115487773 115487857 -6355999 + PB1D10 SINE Alu 12 111 -6 1 1466 266 0 29 0 chr11 115487998 115488032 -6355824 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1466 730 173 0 35 chr11 115488141 115488285 -6355571 - B1_Mus1 SINE Alu 0 148 10 1 1466 357 193 331 7 chr11 115488300 115488436 -6355420 + B3 SINE B2 37 216 0 1 1466 543 267 66 30 chr11 115488655 115488821 -6355035 + ID_B1 SINE B4 53 224 0 1 1466 28 29 0 0 chr11 115488887 115488922 -6354934 + AT_rich Low_complexity Low_complexity 1 35 0 1 1466 468 0 0 0 chr11 115489943 115489995 -6353861 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1466 202 115 0 37 chr11 115490045 115490099 -6353757 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1466 292 97 0 31 chr11 115490128 115490192 -6353664 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1466 319 171 132 12 chr11 115490213 115490296 -6353560 + ID_B1 SINE B4 131 223 -1 1 1466 1006 73 73 0 chr11 115490403 115490517 -6353339 + B1_Mm SINE Alu 1 114 -33 1 1466 216 111 0 0 chr11 115490517 115490553 -6353303 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 1466 1006 73 73 0 chr11 115490553 115490575 -6353281 + B1_Mm SINE Alu 115 145 -2 1 1466 1247 106 50 0 chr11 115490591 115490771 -6353085 - B2_Mm2 SINE B2 -6 189 1 1 1466 1213 34 0 26 chr11 115490787 115490938 -6352918 - B1_Mus2 SINE Alu 0 147 1 1 1466 509 279 41 0 chr11 115491075 115491197 -6352659 - RSINE1 SINE B4 -28 137 11 1 1466 374 263 102 145 chr11 115491640 115491881 -6351975 - B4A SINE B4 -9 283 38 1 1466 184 30 29 29 chr11 115491928 115491962 -6351894 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1466 863 92 18 2 chr11 115491963 115492094 -6351762 - B1_Mus1 SINE Alu 0 148 32 1 1466 337 20 0 39 chr11 115492225 115492277 -6351579 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1466 198 71 0 0 chr11 115492384 115492412 -6351444 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1466 1007 93 21 0 chr11 115492808 115492948 -6350908 - B1_Mur4 SINE Alu -7 143 1 1 1466 615 269 27 0 chr11 115492992 115493141 -6350715 - B3A SINE B2 -27 171 19 1 1466 620 175 331 18 chr11 115493156 115493319 -6350537 - B3 SINE B2 0 216 3 1 1466 504 316 39 7 chr11 115493915 115494068 -6349788 + RSINE1 SINE B4 4 161 -4 1 1466 1239 42 0 0 chr11 115494083 115494227 -6349629 + B1_Mus2 SINE Alu 2 145 -2 1 1466 693 174 0 0 chr11 115494870 115495002 -6348854 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 1466 552 247 141 16 chr11 115495163 115495348 -6348508 + ID_B1 SINE B4 1 208 -16 1 1466 342 0 0 0 chr11 115495457 115495495 -6348361 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1466 234 0 0 0 chr11 115495495 115495520 -6348336 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1466 250 284 20 96 chr11 115495811 115495922 -6347934 - PB1D7 SINE Alu -6 114 1 1 1466 287 199 71 64 chr11 115496069 115496172 -6347684 + PB1D10 SINE Alu 19 117 0 1 1466 393 296 63 16 chr11 115496227 115496354 -6347502 - B1F2 SINE Alu -14 135 3 1 1466 533 230 44 0 chr11 115496244 115496357 -6347499 - ID_B1 SINE B4 -26 198 81 1 1466 805 180 65 0 chr11 115496357 115496496 -6347360 - B1_Mur3 SINE Alu 0 149 2 1 1466 1135 191 24 19 chr11 115496510 115496723 -6347133 - B3 SINE B2 -1 215 2 1 1466 386 293 8 33 chr11 115496777 115496897 -6346959 - B3A SINE B2 -81 117 1 1 1466 186 71 0 0 chr11 115496899 115496927 -6346929 + (CCCCCG)n Simple_repeat Simple_repeat 2 29 0 1 1466 388 284 66 82 chr11 115496928 115497112 -6346744 - B3A SINE B2 0 216 36 1 1466 1449 87 0 5 chr11 115497116 115497302 -6346554 - B2_Mm2 SINE B2 -9 186 2 1 1466 576 98 0 0 chr11 115497302 115497394 -6346462 - L1_Mus3 LINE L1 -1 6637 6546 1 1466 1237 61 0 0 chr11 115497435 115497582 -6346274 - B1_Mm SINE Alu 0 147 1 1 1466 699 199 263 0 chr11 115497590 115497761 -6346095 - B3 SINE B2 0 216 1 1 1466 528 275 69 0 chr11 115497798 115497929 -6345927 + RSINE1 SINE B4 9 148 -17 1 1466 968 123 6 47 chr11 115497952 115497990 -6345866 - B2_Mm2 SINE B2 -13 182 145 1 1466 204 40 0 0 chr11 115497990 115498015 -6345841 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1466 968 123 6 47 chr11 115498015 115498146 -6345710 - B2_Mm2 SINE B2 -51 144 20 1 1466 958 127 0 0 chr11 115498236 115498370 -6345486 - B1_Mus1 SINE Alu -13 135 2 1 1466 246 289 33 22 chr11 115498527 115498619 -6345237 + B4 SINE B4 74 166 -126 1 1466 501 160 59 20 chr11 115498544 115498646 -6345210 + PB1D7 SINE Alu 6 111 -9 1 1466 288 224 0 133 chr11 115498675 115498694 -6345162 + MT2B LTR ERVL 136 233 -368 1 1466 392 185 32 21 chr11 115498694 115498710 -6345146 + B4 SINE B4 69 85 -207 1 1466 505 50 37 24 chr11 115498710 115498792 -6345064 + B1_Mus2 SINE Alu 2 84 -63 1 1466 319 324 36 0 chr11 115499176 115499287 -6344569 - PB1D10 SINE Alu 0 117 3 1 1466 795 206 0 14 chr11 115499301 115499449 -6344407 - B1_Mur1 SINE Alu -3 146 1 1 1466 396 301 30 89 chr11 115499449 115499466 -6344390 - B4 SINE B4 -67 222 68 1 1466 237 83 0 0 chr11 115499467 115499503 -6344353 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1466 935 105 60 0 chr11 115499504 115499637 -6344219 - B1_Mus2 SINE Alu -6 141 1 1 1466 1425 70 38 5 chr11 115499641 115499827 -6344029 - B2_Mm2 SINE B2 -2 193 2 1 1466 232 220 119 0 chr11 115499836 115499895 -6343961 - B1_Mur1 SINE Alu -8 141 76 1 1466 269 244 154 0 chr11 115499904 115499982 -6343874 - B1F2 SINE Alu -35 114 25 1 1466 533 221 156 0 chr11 115500032 115500154 -6343702 + B1_Mur2 SINE Alu 9 149 0 1 1466 214 288 29 43 chr11 115500168 115500237 -6343619 + ID SINE ID 8 75 -149 2 1466 663 13 0 0 chr11 115500247 115500323 -6343533 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 3 1466 352 284 116 0 chr11 115501043 115501138 -6342718 - PB1D7 SINE Alu -8 112 7 4 1466 1176 74 0 0 chr11 115501262 115501410 -6342446 - B1_Mus1 SINE Alu 0 148 1 5 1466 455 273 0 35 chr11 115501413 115501527 -6342329 - ID_B1 SINE B4 0 224 115 6 1466 858 215 47 0 chr11 115501497 115501669 -6342187 - B3 SINE B2 -34 182 3 7 1466 342 115 0 0 chr11 115502034 115502086 -6341770 + (C)n Simple_repeat Simple_repeat 1 52 0 8 1466 251 287 60 60 chr11 115502358 115502458 -6341398 - ID_B1 SINE B4 -124 100 1 6 1466 324 257 132 66 chr11 115503050 115503171 -6340685 - B1F1 SINE Alu -20 129 1 9 1466 466 228 62 16 chr11 115503190 115503319 -6340537 - B1_Mur1 SINE Alu -13 136 2 1 1466 436 214 10 10 chr11 115503577 115503676 -6340180 - PB1D7 SINE Alu -21 99 1 1 1466 273 234 13 25 chr11 115503616 115503695 -6340161 - B4A SINE B4 -146 146 69 1 1466 621 204 170 13 chr11 115503759 115503918 -6339938 + B3 SINE B2 29 212 -4 1 1466 1359 51 91 0 chr11 115503977 115504153 -6339703 + B2_Mm2 SINE B2 2 193 -2 1 1466 247 238 95 0 chr11 115504532 115504595 -6339261 + BC1_Mm scRNA scRNA 16 84 -68 1 1466 573 180 27 10 chr11 115505049 115505171 -6338685 + PB1D9 SINE Alu 2 120 0 1 1466 852 111 0 0 chr11 115505184 115505301 -6338555 + B1_Mus1 SINE Alu 27 143 -5 1 1466 21 0 0 0 chr11 115505301 115505322 -6338534 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 23 0 0 0 chr11 115505443 115505466 -6338390 + AT_rich Low_complexity Low_complexity 1 23 0 1 1466 186 71 0 0 chr11 115506442 115506470 -6337386 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1466 1490 52 15 30 chr11 115507570 115507768 -6336088 - B2_Mm2 SINE B2 0 195 1 2 1466 416 216 38 76 chr11 115508535 115508640 -6335216 - B1F SINE Alu -31 118 18 2 1466 207 162 0 0 chr11 115508672 115508709 -6335147 + CT-rich Low_complexity Low_complexity 4 40 0 2 1466 1094 35 42 21 chr11 115508709 115508853 -6335003 - B1_Mus2 SINE Alu 0 147 1 2 1466 250 244 164 8 chr11 115508982 115509110 -6334746 - Tigger7 DNA MER2_type -31 2460 2313 2 1466 239 267 26 13 chr11 115509517 115509593 -6334263 - B4A SINE B4 -82 210 134 2 1466 219 218 109 0 chr11 115509606 115509661 -6334195 - B4A SINE B4 -224 68 8 2 1466 670 248 63 14 chr11 115509736 115509879 -6333977 - RSINE1 SINE B4 -12 153 4 2 1466 227 214 53 67 chr11 115509866 115509880 -6333976 - PB1D10 SINE Alu -3 114 93 2 1466 229 94 0 0 chr11 115509880 115509912 -6333944 - ID_B1 SINE B4 -18 206 175 2 1466 227 214 53 67 chr11 115509912 115509941 -6333915 - PB1D10 SINE Alu -3 92 41 2 1466 2858 72 35 50 chr11 115510114 115510538 -6333318 + L1_Mus2 LINE L1 6149 6566 0 3 1466 334 307 42 67 chr11 115510609 115510625 -6333231 - B4 SINE B4 -78 214 161 3 1466 615 223 0 0 chr11 115510625 115510737 -6333119 - PB1D9 SINE Alu -2 118 7 3 1466 334 307 42 67 chr11 115510737 115510762 -6333094 - B4 SINE B4 -78 160 65 3 1466 241 244 34 79 chr11 115511719 115511808 -6332048 + MT2B LTR ERVL 156 240 -361 3 1466 697 168 69 0 chr11 115511734 115511865 -6331991 + B1_Mur2 SINE Alu 9 148 -1 3 1466 34 0 0 0 chr11 115511887 115511921 -6331935 + AT_rich Low_complexity Low_complexity 1 34 0 3 1466 328 126 0 72 chr11 115511932 115512001 -6331855 - B2_Mm2 SINE B2 -107 109 47 3 1466 949 138 79 0 chr11 115512061 115512213 -6331643 - B2_Mm1t SINE B2 -28 165 2 3 1466 361 280 0 0 chr11 115512311 115512386 -6331470 - ID_B1 SINE B4 -117 107 33 3 1466 746 254 65 15 chr11 115512427 115512627 -6331229 + B3 SINE B2 4 213 -3 3 1466 1333 86 0 6 chr11 115513545 115513721 -6330135 - B2_Mm2 SINE B2 -19 176 2 4 1466 1286 34 0 0 chr11 115513747 115513894 -6329962 - B1_Mus2 SINE Alu 0 147 1 4 1466 25 0 0 0 chr11 115514193 115514218 -6329638 + AT_rich Low_complexity Low_complexity 1 25 0 4 1466 478 290 0 0 chr11 115514218 115514318 -6329538 + PB1D7 SINE Alu 14 113 -7 4 1466 213 292 39 65 chr11 115514500 115514577 -6329279 - ID4 SINE ID -4 79 5 4 1466 24 0 0 0 chr11 115515457 115515481 -6328375 + AT_rich Low_complexity Low_complexity 1 24 0 4 1466 422 344 24 0 chr11 115515482 115515607 -6328249 - RSINE1 SINE B4 0 165 38 4 1466 203 278 60 0 chr11 115515661 115515794 -6328062 + (CTCTG)n Simple_repeat Simple_repeat 3 143 0 4 1466 230 302 79 0 chr11 115515794 115515857 -6327999 - ID4 SINE ID -8 75 8 4 1466 296 181 82 14 chr11 115515888 115515961 -6327895 - ID4 SINE ID 0 83 6 4 1466 765 261 11 17 chr11 115516073 115516252 -6327604 + B3A SINE B2 3 180 -18 5 1466 263 250 0 0 chr11 115516305 115516353 -6327503 - B1_Mus1 SINE Alu -99 49 2 5 1466 434 208 72 10 chr11 115516481 115516578 -6327278 + B1_Mur2 SINE Alu 33 135 -14 5 1466 478 225 8 98 chr11 115517349 115517482 -6326374 - ID_B1 SINE B4 -2 222 102 5 1466 291 290 120 0 chr11 115517495 115517595 -6326261 - PB1D7 SINE Alu -8 112 1 5 1466 430 175 12 0 chr11 115517635 115517715 -6326141 + PB1D9 SINE Alu 30 110 -10 5 1466 534 16 0 0 chr11 115517728 115517791 -6326065 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1466 1199 56 0 0 chr11 115517851 115517995 -6325861 + B1_Mus2 SINE Alu 4 147 0 5 1466 252 0 0 0 chr11 115518471 115518499 -6325357 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1466 517 249 59 113 chr11 115518880 115518954 -6324902 + B4 SINE B4 29 92 -200 5 1466 924 73 0 8 chr11 115518954 115519078 -6324778 + B1_Mus2 SINE Alu 2 124 -23 6 1466 447 237 60 17 chr11 115519079 115519195 -6324661 + B3 SINE B2 96 216 0 6 1466 279 277 49 78 chr11 115519226 115519328 -6324528 - B3A SINE B2 -10 188 90 6 1466 255 61 0 0 chr11 115519350 115519383 -6324473 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1466 492 32 0 0 chr11 115519383 115519445 -6324411 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1466 364 197 77 16 chr11 115519490 115519597 -6324259 - B1_Mur4 SINE Alu -2 146 37 6 1466 369 0 0 0 chr11 115519663 115519704 -6324152 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1466 251 98 39 0 chr11 115519704 115519755 -6324101 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 6 1466 513 47 0 0 chr11 115520008 115520072 -6323784 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1466 681 237 22 7 chr11 115520368 115520504 -6323352 + RSINE1 SINE B4 3 140 -25 6 1466 282 95 0 0 chr11 115520518 115520560 -6323296 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1466 733 92 65 24 chr11 115520656 115520779 -6323077 - B1_Mur4 SINE Alu 0 150 23 7 1466 739 94 19 0 chr11 115520777 115520883 -6322973 + B1_Mur4 SINE Alu 42 149 -1 7 1466 277 338 43 50 chr11 115521107 115521247 -6322609 - B4A SINE B4 -18 274 136 7 1466 236 111 27 27 chr11 115521272 115521346 -6322510 + A-rich Low_complexity Low_complexity 5 78 0 7 1466 499 214 0 20 chr11 115521365 115521465 -6322391 - B4A SINE B4 -194 98 1 7 1466 1187 90 6 12 chr11 115521597 115521766 -6322090 + B2_Mm2 SINE B2 3 170 -25 7 1466 299 301 12 12 chr11 115522057 115522141 -6321715 - PB1D10 SINE Alu -10 107 24 7 1466 1848 153 29 87 chr11 115522705 115523085 -6320771 + ORR1C1 LTR MaLR 18 375 -3 7 1466 401 294 18 35 chr11 115523564 115523677 -6320179 - PB1D7 SINE Alu -8 112 2 7 1466 737 113 34 17 chr11 115524342 115524459 -6319397 + B1_Mus2 SINE Alu 28 146 -1 8 1466 1187 75 0 0 chr11 115524789 115524935 -6318921 - B1_Mus2 SINE Alu 0 147 2 8 1466 243 0 0 0 chr11 115525123 115525150 -6318706 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1466 886 92 107 0 chr11 115525995 115526126 -6317730 - B1_Mur3 SINE Alu -3 146 2 8 1466 1229 41 0 7 chr11 115526888 115527035 -6316821 + B1_Mus2 SINE Alu 2 147 0 8 1466 406 234 60 88 chr11 115527057 115527183 -6316673 + PB1D9 SINE Alu 1 115 -5 8 1466 1604 42 11 0 chr11 115527183 115527374 -6316482 + B2_Mm1t SINE B2 1 193 0 8 1466 280 273 62 131 chr11 115527374 115527407 -6316449 + B1_Mur3 SINE Alu 114 149 0 8 1466 744 199 0 33 chr11 115527422 115527573 -6316283 + B1_Mus1 SINE Alu 1 146 -2 8 1466 229 228 29 115 chr11 115527980 115528084 -6315772 - MT2B2 LTR ERVL -296 288 194 8 1466 466 197 42 35 chr11 115528002 115528121 -6315735 - PB1 SINE Alu -10 139 2 8 1466 254 225 60 48 chr11 115528156 115528240 -6315616 + PB1 SINE Alu 32 116 -11 9 1466 223 300 42 14 chr11 115528261 115528332 -6315524 - B3A SINE B2 -125 73 1 9 1466 319 231 31 100 chr11 115528764 115528894 -6314962 + CYRA11_Mm Unknown Y-chromosome 181 301 -316 9 1466 653 247 18 134 chr11 115528787 115528895 -6314961 - URR1B DNA MER1_type -27 198 93 9 1466 1112 75 0 7 chr11 115528895 115529042 -6314814 + B1_Mus1 SINE Alu 2 147 -1 9 1466 653 247 18 134 chr11 115529042 115529157 -6314699 - URR1B DNA MER1_type -133 92 1 9 1466 366 308 84 8 chr11 115529549 115529680 -6314176 + RSINE1 SINE B4 17 157 -8 9 1466 668 217 22 7 chr11 115529676 115529815 -6314041 + B3 SINE B2 76 216 0 9 1466 1508 53 37 0 chr11 115530182 115530369 -6313487 + B2_Mm2 SINE B2 2 195 0 9 1466 251 26 79 0 chr11 115530369 115530407 -6313449 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 9 1466 457 208 206 40 chr11 115530691 115530866 -6312990 + B3 SINE B2 2 205 -11 9 1466 607 242 202 0 chr11 115531337 115531375 -6312481 - B3 SINE B2 0 216 177 1 1466 201 74 0 0 chr11 115531375 115531402 -6312454 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 1466 607 242 202 0 chr11 115531402 115531541 -6312315 - B3 SINE B2 -40 176 4 1 1466 308 98 410 0 chr11 115532619 115532680 -6311176 - RMER6A LTR ERVK -8 748 663 1 1466 330 45 0 0 chr11 115532741 115532785 -6311071 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1466 573 157 25 42 chr11 115533028 115533148 -6310708 - PB1D9 SINE Alu 0 120 3 1 1466 614 227 76 0 chr11 115533210 115533342 -6310514 + B3 SINE B2 62 203 -13 1 1466 445 320 41 0 chr11 115533358 115533480 -6310376 + B3A SINE B2 2 128 -70 1 1466 209 250 0 18 chr11 115533496 115533553 -6310303 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1466 551 240 105 13 chr11 115533832 115533984 -6309872 + B3 SINE B2 51 216 0 1 1466 535 220 60 3 chr11 115534124 115534247 -6309609 - PB1D7 SINE Alu 0 150 17 1 1466 445 273 57 24 chr11 115534537 115534661 -6309195 + RSINE1 SINE B4 3 130 -35 1 1466 751 244 6 40 chr11 115534799 115534974 -6308882 - B3 SINE B2 0 216 48 1 1466 727 135 20 47 chr11 115535009 115535157 -6308699 - B1_Mur4 SINE Alu 0 150 7 1 1466 453 247 43 0 chr11 115535158 115535251 -6308605 - PB1D9 SINE Alu -13 107 11 1 1466 228 310 132 66 chr11 115535246 115535398 -6308458 - MER106A DNA MER1_type -72 164 3 1 1466 1465 64 16 0 chr11 115536239 115536426 -6307430 - B2_Mm2 SINE B2 -4 191 2 1 1466 1220 61 0 0 chr11 115536462 115536609 -6307247 - B1_Mus2 SINE Alu 0 147 1 1 1466 885 236 24 39 chr11 115536678 115536885 -6306971 - B3 SINE B2 0 216 13 1 1466 285 306 0 0 chr11 115537514 115537586 -6306270 + (TATG)n Simple_repeat Simple_repeat 2 73 0 1 1466 395 266 147 8 chr11 115538426 115538555 -6305301 + B1F SINE Alu 3 149 0 1 1466 182 359 47 0 chr11 115538605 115538669 -6305187 - MIRb SINE MIR -80 188 122 1 1466 706 233 169 74 chr11 115539199 115539412 -6304444 + RMER6A LTR ERVK 1 208 -512 1 1466 748 51 31 0 chr11 115539412 115539510 -6304346 + B1_Mus1 SINE Alu 5 105 -43 1 1466 706 233 169 74 chr11 115539510 115540029 -6303827 + RMER6A LTR ERVK 209 716 -4 1 1466 243 268 14 14 chr11 115540057 115540129 -6303727 - ID4 SINE ID -8 75 4 1 1466 1491 73 16 0 chr11 115541738 115541930 -6301926 - B2_Mm2 SINE B2 0 195 1 1 1466 979 139 22 28 chr11 115542075 115542253 -6301603 + B2_Mm2 SINE B2 1 177 -18 1 1466 947 93 8 0 chr11 115542279 115542408 -6301448 + B2_Mm1a SINE B2 1 130 -63 1 1466 350 267 49 10 chr11 115542412 115542514 -6301342 + B3A SINE B2 75 180 -18 1 1466 21 57 0 0 chr11 115542533 115542568 -6301288 + AT_rich Low_complexity Low_complexity 1 35 0 1 1466 248 152 0 283 chr11 115542641 115542733 -6301123 - ID_B1 SINE B4 -19 205 140 1 1466 377 289 31 0 chr11 115542851 115542948 -6300908 + PB1D9 SINE Alu 13 112 -8 1 1466 673 219 47 0 chr11 115543027 115543155 -6300701 - B1_Mur2 SINE Alu -11 138 5 1 1466 854 247 11 21 chr11 115544382 115544568 -6299288 - B3 SINE B2 -3 213 30 1 1466 802 206 0 0 chr11 115544575 115544711 -6299145 + B1_Mur4 SINE Alu 5 140 -10 1 1466 279 239 153 18 chr11 115544775 115544886 -6298970 - ID_B1 SINE B4 -9 215 90 1 1466 1051 103 0 7 chr11 115544990 115545137 -6298719 + B1_Mus1 SINE Alu 3 148 0 1 1466 749 286 67 17 chr11 115545189 115545427 -6298429 + B4A SINE B4 16 265 -27 1 1466 287 172 45 22 chr11 115545448 115545537 -6298319 + (CACAC)n Simple_repeat Simple_repeat 2 92 0 1 1466 374 67 26 26 chr11 115545555 115545632 -6298224 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1466 272 259 12 47 chr11 115545673 115545758 -6298098 + L1MC3 LINE L1 7626 7707 -78 1 1466 1149 89 7 0 chr11 115545831 115545977 -6297879 + B1_Mm SINE Alu 1 147 0 1 1466 432 308 34 20 chr11 115546110 115546256 -6297600 + RSINE1 SINE B4 1 148 -17 1 1466 220 289 26 26 chr11 115546592 115546670 -6297186 - ID4_ SINE ID -5 78 1 1 1466 752 137 137 0 chr11 115547088 115547219 -6296637 - B1_Mur1 SINE Alu 0 149 1 1 1466 242 269 28 56 chr11 115547268 115547339 -6296517 + ID4 SINE ID 2 70 -13 1 1466 458 50 17 0 chr11 115547429 115547489 -6296367 + B1_Mus1 SINE Alu 6 66 -82 1 1466 237 65 0 0 chr11 115547501 115547532 -6296324 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1466 325 272 331 11 chr11 115548281 115548456 -6295400 + L1M4 LINE L1 2715 2945 -3201 1 1466 1070 96 13 27 chr11 115548461 115548611 -6295245 + B1_Mus1 SINE Alu 1 148 0 1 1466 201 74 0 0 chr11 115548634 115548661 -6295195 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1466 477 295 13 26 chr11 115548666 115548819 -6295037 + RSINE1 SINE B4 2 152 -13 1 1466 262 290 10 79 chr11 115548850 115548951 -6294905 + B3A SINE B2 103 196 -2 1 1466 844 180 7 7 chr11 115548949 115549089 -6294767 - B1_Mur4 SINE Alu -3 147 8 1 1466 358 291 13 0 chr11 115549168 115549247 -6294609 + ID_B1 SINE B4 94 173 -51 1 1466 1964 121 21 63 chr11 115549251 115549585 -6294271 - ORR1A4 LTR MaLR -8 321 2 1 1466 344 232 36 24 chr11 115549723 115549807 -6294049 + PB1D10 SINE Alu 3 87 -30 1 1466 592 214 38 0 chr11 115549827 115549958 -6293898 + B1_Mur1 SINE Alu 12 147 -2 1 1466 33 0 0 0 chr11 115549965 115549998 -6293858 + AT_rich Low_complexity Low_complexity 1 33 0 1 1466 514 155 0 49 chr11 115550011 115550113 -6293743 + B1F SINE Alu 44 140 -9 1 1466 393 167 0 60 chr11 115550040 115550123 -6293733 + ID_B1 SINE B4 146 223 -1 1 1466 1087 53 0 0 chr11 115550329 115550460 -6293396 + B1_Mus2 SINE Alu 2 132 -15 1 1466 1186 61 0 0 chr11 115551236 115551383 -6292473 + B1_Mus2 SINE Alu 1 147 0 1 1466 224 91 0 22 chr11 115551647 115551692 -6292164 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1466 290 288 157 81 chr11 115552025 115552050 -6291806 + B4 SINE B4 72 142 -150 1 1466 445 123 212 34 chr11 115552050 115552168 -6291688 + B1_Mur1 SINE Alu 10 148 -1 1 1466 290 288 157 81 chr11 115552168 115552210 -6291646 + B4 SINE B4 143 270 -22 1 1466 786 187 8 0 chr11 115552690 115552824 -6291032 + B1_Mur4 SINE Alu 15 149 -1 1 1466 399 21 0 0 chr11 115552824 115552872 -6290984 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1 1466 248 264 28 0 chr11 115552908 115552980 -6290876 - ID4_ SINE ID -6 77 4 1 1466 705 255 6 25 chr11 115553016 115553173 -6290683 - RSINE1 SINE B4 -8 157 4 1 1466 747 164 13 64 chr11 115553294 115553450 -6290406 + B1_Mur2 SINE Alu 2 149 0 1 1466 460 325 19 72 chr11 115553630 115553839 -6290017 - MIR SINE MIR -29 233 36 1 1466 284 322 138 16 chr11 115554022 115554145 -6289711 + B3 SINE B2 2 139 -77 1 1466 500 212 89 22 chr11 115554465 115554600 -6289256 + B1F SINE Alu 1 144 -5 1 1466 306 336 14 94 chr11 115554632 115554687 -6289169 + B1F SINE Alu 11 54 -95 1 1466 1419 65 43 0 chr11 115554687 115554873 -6288983 + B2_Mm2 SINE B2 2 195 0 1 1466 306 336 14 94 chr11 115554873 115554955 -6288901 + B1F SINE Alu 55 137 -12 1 1466 401 281 11 66 chr11 115554985 115555168 -6288688 + L1M2 LINE L1 5292 5464 -827 1 1466 416 216 45 0 chr11 115555172 115555260 -6288596 + B3 SINE B2 125 216 0 1 1466 382 283 21 21 chr11 115555260 115555401 -6288455 + L1M2 LINE L1 5473 5613 -687 1 1466 241 256 103 0 chr11 115555774 115555852 -6288004 + L1M2 LINE L1 5696 5781 -516 1 1466 619 35 0 6 chr11 115555931 115556012 -6287844 + B1_Mur4 SINE Alu 33 139 -11 1 1466 188 34 0 33 chr11 115556012 115556042 -6287814 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1466 200 34 0 33 chr11 115556199 115556229 -6287627 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1466 610 132 11 0 chr11 115556230 115556321 -6287535 - B1_Mus2 SINE Alu -14 133 42 1 1466 331 102 0 39 chr11 115556367 115556418 -6287438 - B1_Mus1 SINE Alu -88 60 12 1 1466 278 279 0 0 chr11 115556371 115556432 -6287424 - B4A SINE B4 -150 142 82 1 1466 290 291 139 16 chr11 115556762 115556891 -6286965 + RSINE1 SINE B4 2 146 -19 1 1466 331 175 31 31 chr11 115558416 115558481 -6285375 + B1F SINE Alu 85 149 0 1 1466 3026 159 36 12 chr11 115558901 115559460 -6284396 + RMER15 LTR ERVL 4 575 0 1 1466 363 289 48 32 chr11 115561509 115561634 -6282222 - B1F1 SINE Alu -18 131 5 1 1466 455 277 134 11 chr11 115562380 115562559 -6281297 - B3 SINE B2 -14 202 2 1 1466 228 283 0 0 chr11 115562857 115562910 -6280946 + GA-rich Low_complexity Low_complexity 1 53 0 1 1466 1706 31 0 0 chr11 115562997 115563189 -6280667 + B2_Mm1t SINE B2 2 193 0 1 1466 207 88 0 0 chr11 115563371 115563405 -6280451 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1466 323 117 17 0 chr11 115563455 115563515 -6280341 + B1_Mus2 SINE Alu 87 147 0 1 1466 529 319 7 0 chr11 115563677 115563812 -6280044 - RSINE1 SINE B4 -2 163 28 1 1466 1149 83 0 0 chr11 115563824 115563969 -6279887 - B1_Mus2 SINE Alu -1 146 2 1 1466 307 278 122 10 chr11 115564079 115564177 -6279679 - PB1D7 SINE Alu 0 120 12 1 1466 456 19 0 0 chr11 115564282 115564335 -6279521 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1466 949 86 47 0 chr11 115564335 115564463 -6279393 - B1_Mus2 SINE Alu -12 135 2 1 1466 505 233 192 6 chr11 115564465 115564642 -6279214 - ID_B1 SINE B4 -12 212 3 1 1466 2061 114 15 60 chr11 115564926 115565262 -6278594 + ORR1A4 LTR MaLR 1 321 -8 1 1466 22 0 0 0 chr11 115565345 115565367 -6278489 + AT_rich Low_complexity Low_complexity 1 22 0 1 1466 253 317 221 0 chr11 115565618 115565722 -6278134 + ID_B1 SINE B4 1 127 -97 1 1466 901 240 30 57 chr11 115565903 115566133 -6277723 + ID_B1 SINE B4 1 224 0 2 1466 228 333 12 24 chr11 115566142 115566225 -6277631 + ID4 SINE ID 2 83 0 2 1466 1484 73 16 0 chr11 115566359 115566550 -6277306 - B2_Mm2 SINE B2 0 195 2 2 1466 2248 130 153 16 chr11 115566604 115567043 -6276813 - RMER15 LTR ERVL -14 561 63 2 1466 229 252 34 163 chr11 115567134 115567157 -6276699 + MT2B LTR ERVL 137 140 -461 2 1466 683 176 6 101 chr11 115567157 115567315 -6276541 + B1_Mur4 SINE Alu 1 143 -7 2 1466 257 229 0 0 chr11 115567328 115567376 -6276480 + PB1 SINE Alu 76 123 -4 2 1466 1349 88 11 6 chr11 115567386 115567568 -6276288 - B2_Mm2 SINE B2 -8 187 5 2 1466 444 242 67 45 chr11 115567980 115568060 -6275796 + B3 SINE B2 77 165 -51 2 1466 252 0 0 0 chr11 115568060 115568088 -6275768 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1466 444 242 67 45 chr11 115568088 115568141 -6275715 + B3 SINE B2 166 213 -3 2 1466 188 100 25 0 chr11 115568885 115568925 -6274931 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 2 1466 28 91 0 0 chr11 115569585 115569662 -6274194 + GC_rich Low_complexity Low_complexity 1 77 0 2 1466 232 274 11 74 chr11 115569671 115569860 -6273996 + C-rich Low_complexity Low_complexity 4 180 0 2 1466 288 248 9 37 chr11 115569750 115569859 -6273997 + (CCG)n Simple_repeat Simple_repeat 2 107 0 2 1466 192 40 0 0 chr11 115569929 115569954 -6273902 + (CCCCG)n Simple_repeat Simple_repeat 5 29 0 2 1466 597 215 164 28 chr11 115570458 115570614 -6273242 + B3A SINE B2 3 179 -37 2 1466 180 0 0 0 chr11 115570614 115570634 -6273222 + (CG)n Simple_repeat Simple_repeat 2 21 0 2 1466 411 21 0 0 chr11 115570634 115570681 -6273175 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1466 536 215 164 28 chr11 115570681 115570700 -6273156 + B3 SINE B2 180 202 -14 2 1466 942 92 20 54 chr11 115571331 115571480 -6272376 + B1_Mus1 SINE Alu 2 145 -3 2 1466 280 239 22 175 chr11 115571698 115571770 -6272086 + PB1 SINE Alu 12 72 -55 2 1466 835 200 109 10 chr11 115571770 115571962 -6271894 + B3 SINE B2 5 215 -1 2 1466 280 239 22 175 chr11 115571962 115572026 -6271830 + PB1 SINE Alu 73 127 0 2 1466 591 138 0 0 chr11 115572182 115572269 -6271587 + B2_Mm2 SINE B2 2 88 -107 2 1466 1144 63 0 20 chr11 115572338 115572484 -6271372 - B1_Mus2 SINE Alu 0 147 5 2 1466 395 330 29 119 chr11 115572633 115572843 -6271013 + ID_B1 SINE B4 16 206 -18 2 1466 567 0 0 0 chr11 115572843 115572906 -6270950 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1466 237 211 0 19 chr11 115572923 115572976 -6270880 + B1_Mur2 SINE Alu 97 148 -1 2 1466 666 299 27 7 chr11 115572978 115573126 -6270730 + B3A SINE B2 2 152 -46 2 1466 263 28 28 0 chr11 115573132 115573168 -6270688 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1466 249 226 0 0 chr11 115573167 115573251 -6270605 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1466 934 217 20 0 chr11 115573282 115573485 -6270371 + B3 SINE B2 5 211 -5 2 1466 22 0 0 0 chr11 115573491 115573513 -6270343 + AT_rich Low_complexity Low_complexity 1 22 0 2 1466 619 293 0 0 chr11 115573513 115573653 -6270203 + ID_B1 SINE B4 83 222 -2 2 1466 532 281 31 0 chr11 115574526 115574654 -6269202 + ID_B1 SINE B4 91 222 -2 2 1466 510 276 31 56 chr11 115574662 115574858 -6268998 + B3A SINE B2 1 191 -7 2 1466 219 36 0 0 chr11 115575135 115575163 -6268693 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2 1466 712 163 288 24 chr11 115575168 115575183 -6268673 - B3 SINE B2 -1 215 203 2 1466 1158 75 0 0 chr11 115575183 115575329 -6268527 - B1_Mus2 SINE Alu 0 147 2 2 1466 712 163 288 24 chr11 115575329 115575483 -6268373 - B3 SINE B2 -14 202 1 2 1466 1244 41 0 0 chr11 115575577 115575724 -6268132 + B1_Mus2 SINE Alu 1 147 0 2 1466 23 0 0 0 chr11 115575940 115575963 -6267893 + GC_rich Low_complexity Low_complexity 1 23 0 2 1466 699 324 10 24 chr11 115576258 115576467 -6267389 - B4A SINE B4 -86 206 1 2 1466 4487 12 2 0 chr11 115576614 115577106 -6266750 - MT2_Mm LTR ERVL 0 493 1 2 1466 527 171 74 41 chr11 115577107 115577229 -6266627 + B1_Mus2 SINE Alu 22 147 0 2 1466 1085 61 7 20 chr11 115577241 115577391 -6266465 + B1_Mus1 SINE Alu 1 148 0 2 1466 294 234 0 203 chr11 115578130 115578248 -6265608 + B3A SINE B2 1 94 -104 2 1466 1028 60 45 0 chr11 115578510 115578643 -6265213 - B1_Mus2 SINE Alu -8 139 1 2 1466 734 181 180 6 chr11 115578736 115578914 -6264942 + B3 SINE B2 3 211 -5 2 1466 22 0 0 0 chr11 115578922 115578944 -6264912 + AT_rich Low_complexity Low_complexity 1 22 0 2 1466 993 121 102 17 chr11 115579429 115579606 -6264250 + B2_Mm2 SINE B2 1 192 -3 2 1466 604 153 16 31 chr11 115579620 115579710 -6264146 + BC1_Mm scRNA scRNA 2 89 -63 2 1466 1127 81 0 0 chr11 115579710 115579858 -6263998 + B1_Mus1 SINE Alu 1 148 0 2 1466 604 153 16 31 chr11 115579858 115579895 -6263961 + BC1_Mm scRNA scRNA 90 127 -25 2 1466 697 229 43 30 chr11 115579924 115580095 -6263761 - B3 SINE B2 -21 195 20 2 1466 588 187 179 0 chr11 115580214 115580348 -6263508 + URR1A DNA MER1_type 4 161 -65 2 1466 590 113 72 0 chr11 115580350 115580447 -6263409 - B1_Mus1 SINE Alu -35 113 10 2 1466 526 120 12 12 chr11 115580456 115580540 -6263316 + URR1A DNA MER1_type 142 225 -1 2 1466 290 253 133 33 chr11 115580556 115580646 -6263210 + PB1 SINE Alu 29 127 0 2 1466 1093 72 156 0 chr11 115580647 115580814 -6263042 + B2_Mm1a SINE B2 1 193 0 2 1466 511 273 8 32 chr11 115580833 115580958 -6262898 + RSINE1 SINE B4 1 122 -43 2 1466 560 147 0 0 chr11 115580972 115581067 -6262789 + B2_Mm2 SINE B2 3 97 -98 2 1466 516 16 0 0 chr11 115581077 115581138 -6262718 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1466 347 317 0 0 chr11 115581138 115581242 -6262614 - B1_Mur3 SINE Alu -45 104 1 2 1466 1350 61 77 0 chr11 115581400 115581581 -6262275 + B2_Mm2 SINE B2 1 195 0 2 1466 863 38 0 0 chr11 115581597 115581703 -6262153 + B1_Mm SINE Alu 34 139 -8 2 1466 186 43 0 0 chr11 115581703 115581726 -6262130 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1466 788 70 16 81 chr11 115581726 115581743 -6262113 + B1_Mur4 SINE Alu 139 150 0 2 1466 274 132 206 0 chr11 115581746 115581814 -6262042 + RLTR25B LTR ERVK 428 509 -519 2 1466 602 35 100 56 chr11 115581760 115581850 -6262006 + B1_Mm SINE Alu 42 135 -12 2 1466 252 0 0 0 chr11 115581850 115581878 -6261978 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1466 322 212 202 0 chr11 115582012 115582111 -6261745 - PB1D9 SINE Alu -1 119 1 2 1466 1163 177 29 0 chr11 115582286 115582495 -6261361 + B3 SINE B2 2 216 0 2 1466 760 104 68 53 chr11 115582502 115582634 -6261222 + B1_Mus2 SINE Alu 1 134 -13 2 1466 650 47 0 11 chr11 115582635 115582722 -6261134 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 2 1466 929 159 0 7 chr11 115582740 115582886 -6260970 + B1_Mur3 SINE Alu 5 149 0 2 1466 453 270 0 0 chr11 115582951 115583066 -6260790 - PB1D10 SINE Alu -1 116 2 2 1466 274 191 143 0 chr11 115583183 115583246 -6260610 + MTC LTR MaLR 1 72 -349 2 1466 1173 54 0 13 chr11 115583251 115583400 -6260456 + B1_Mus1 SINE Alu 2 148 0 2 1466 192 77 0 0 chr11 115583400 115583426 -6260430 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1466 266 228 17 17 chr11 115583426 115583484 -6260372 + MTC LTR MaLR 63 120 -301 2 1466 857 192 7 0 chr11 115583529 115583675 -6260181 - B1_Mur3 SINE Alu -2 147 1 2 1466 1583 132 82 41 chr11 115583675 115583968 -6259888 + MTC LTR MaLR 109 413 -8 2 1466 195 42 0 0 chr11 115584546 115584570 -6259286 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 2 1466 234 91 0 0 chr11 115584612 115584645 -6259211 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1466 449 307 8 1 chr11 115584693 115584818 -6259038 - ID_B1 SINE B4 -80 212 81 2 1466 730 264 95 16 chr11 115585009 115585198 -6258658 + ID_B1 SINE B4 15 218 -6 2 1466 254 29 29 0 chr11 115585544 115585579 -6258277 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2 1466 183 80 0 0 chr11 115585582 115585607 -6258249 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1466 1172 61 0 20 chr11 115586152 115586303 -6257553 - B1_Mus1 SINE Alu 0 148 1 2 1466 42 0 0 0 chr11 115586303 115586345 -6257511 + AT_rich Low_complexity Low_complexity 1 42 0 2 1466 1226 55 0 0 chr11 115586345 115586491 -6257365 - B1_Mm SINE Alu 0 147 2 2 1466 1259 48 12 6 chr11 115586496 115586662 -6257194 - B2_Mm2 SINE B2 -2 193 27 2 1466 537 233 36 67 chr11 115586670 115586857 -6256999 - B3A SINE B2 0 195 4 2 1466 1605 43 0 0 chr11 115586860 115587047 -6256809 - B2_Mm1a SINE B2 -6 187 1 2 1466 589 167 116 43 chr11 115587053 115587191 -6256665 - B1_Mur1 SINE Alu 0 149 2 2 1466 197 140 0 23 chr11 115587192 115587236 -6256620 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1466 1213 75 79 17 chr11 115587318 115587495 -6256361 + B2_Mm2 SINE B2 4 191 -4 2 1466 1028 60 0 43 chr11 115587499 115587638 -6256218 + B1_Mm SINE Alu 2 134 -13 2 1466 221 0 35 0 chr11 115587638 115587667 -6256189 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 1466 1365 105 21 0 chr11 115587667 115587857 -6255999 + B2_Mm2 SINE B2 2 195 0 2 1466 280 291 13 0 chr11 115587860 115587939 -6255917 + ID_B1 SINE B4 143 222 -2 2 1466 491 70 0 14 chr11 115589014 115589087 -6254769 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 2 1466 322 314 38 0 chr11 115589099 115589204 -6254652 + PB1D7 SINE Alu 1 109 -11 2 1466 494 256 58 25 chr11 115589206 115589326 -6254530 - B3 SINE B2 0 216 93 2 1466 662 155 10 0 chr11 115589343 115589446 -6254410 + B1_Mus2 SINE Alu 34 137 -10 2 1466 207 0 0 0 chr11 115589446 115589469 -6254387 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1466 534 31 0 0 chr11 115589478 115589542 -6254314 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 3 1466 551 236 19 0 chr11 115589551 115589657 -6254199 - B3A SINE B2 -90 108 1 2 1466 1209 108 0 0 chr11 115589666 115590458 -6253398 + (TG)n Simple_repeat Simple_repeat 1 792 0 3 1466 211 175 50 0 chr11 115590515 115590555 -6253301 + GA-rich Low_complexity Low_complexity 2 43 0 3 1466 269 271 90 45 chr11 115590666 115590755 -6253101 + B4A SINE B4 5 97 -195 3 1466 292 394 0 0 chr11 115591029 115591133 -6252723 + B4 SINE B4 78 181 -111 3 1466 1208 74 0 0 chr11 115591161 115591309 -6252547 + B1_Mus1 SINE Alu 1 148 0 3 1466 240 257 13 69 chr11 115591314 115591359 -6252497 + ORR1B1-int LTR MaLR 605 644 -865 3 1466 1620 32 21 0 chr11 115591359 115591548 -6252308 + B2_Mm1a SINE B2 1 193 0 3 1466 240 257 13 69 chr11 115591548 115591661 -6252195 + ORR1B1-int LTR MaLR 645 753 -756 3 1466 784 88 0 0 chr11 115591559 115591661 -6252195 + B1_Mus2 SINE Alu 6 107 -40 3 1466 552 217 51 17 chr11 115591661 115591676 -6252180 + B4 SINE B4 91 211 -81 3 1466 387 0 0 0 chr11 115591687 115591730 -6252126 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1466 1106 122 61 0 chr11 115591754 115591934 -6251922 - B2_Mm2 SINE B2 -3 192 2 3 1466 1138 88 0 0 chr11 115592949 115593097 -6250759 - B1_Mus1 SINE Alu 0 148 1 3 1466 5902 79 25 106 chr11 115593119 115593581 -6250275 - MTB-int LTR MaLR -177 921 558 3 1466 1691 21 0 15 chr11 115593581 115593777 -6250079 - B2_Mm1a SINE B2 0 193 1 3 1466 5902 79 25 106 chr11 115593777 115594316 -6249540 - MTB-int LTR MaLR -541 557 1 3 1466 3197 45 10 36 chr11 115594316 115594533 -6249323 - MTB LTR MaLR 0 400 196 3 1466 287 49 0 24 chr11 115594533 115594575 -6249281 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3 1466 628 63 236 98 chr11 115594576 115594699 -6249157 - B1_Mus1 SINE Alu -8 140 1 3 1466 3197 45 10 36 chr11 115594699 115594890 -6248966 - MTB LTR MaLR -205 195 1 3 1466 520 30 0 0 chr11 115595029 115595096 -6248760 - L1_Mus1 LINE L1 0 6567 6501 3 1466 306 0 0 0 chr11 115595203 115595237 -6248619 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1466 575 225 29 7 chr11 115595901 115596040 -6247816 - B1F1 SINE Alu -7 142 1 3 1466 1115 68 167 0 chr11 115596311 115596473 -6247383 + B2_Mm2 SINE B2 1 189 -6 3 1466 198 0 0 0 chr11 115596491 115596513 -6247343 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 3 1466 729 197 0 0 chr11 115596514 115596636 -6247220 + B1_Mur3 SINE Alu 11 132 -17 3 1466 1715 5 21 0 chr11 115596636 115596825 -6247031 - B2_Mm1a SINE B2 0 193 1 3 1466 835 171 7 7 chr11 115596982 115597129 -6246727 - B1_Mus1 SINE Alu 0 148 2 3 1466 198 0 0 0 chr11 115597147 115597169 -6246687 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 3 1466 1226 48 7 0 chr11 115597177 115597323 -6246533 - B1_Mus2 SINE Alu 0 147 1 3 1466 24 77 0 0 chr11 115597328 115597380 -6246476 + AT_rich Low_complexity Low_complexity 1 52 0 3 1466 604 274 19 31 chr11 115597471 115597633 -6246223 - RSINE1 SINE B4 -5 160 1 3 1466 321 307 99 7 chr11 115597713 115597854 -6246002 - HAL1-3A_ME LINE L1 -421 2437 2284 3 1466 1289 164 9 9 chr11 115598203 115598418 -6245438 + B3 SINE B2 2 216 0 3 1466 905 164 7 0 chr11 115598439 115598585 -6245271 + B1_Mur2 SINE Alu 1 147 -2 3 1466 1457 45 56 0 chr11 115598604 115598783 -6245073 + B2_Mm1a SINE B2 1 189 -4 3 1466 1378 68 11 0 chr11 115598803 115598979 -6244877 + B2_Mm1t SINE B2 2 179 -14 3 1466 350 63 316 35 chr11 115600715 115600829 -6243027 - B2_Mm2 SINE B2 0 195 50 3 1466 1291 96 23 0 chr11 115600909 115601086 -6242770 - B2_Mm2 SINE B2 -14 181 1 3 1466 730 224 12 43 chr11 115601274 115601437 -6242419 + B3A SINE B2 5 162 -36 3 1466 333 0 0 0 chr11 115601442 115601479 -6242377 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1466 1157 166 29 29 chr11 115601502 115601707 -6242149 - B3 SINE B2 -10 206 2 3 1466 245 324 28 0 chr11 115601714 115601785 -6242071 + B3 SINE B2 132 204 -12 3 1466 865 100 0 32 chr11 115601805 115601929 -6241927 + B2_Mm2 SINE B2 14 133 -62 3 1466 200 59 0 29 chr11 115601939 115601974 -6241882 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3 1466 1253 54 0 0 chr11 115601977 115602125 -6241731 + B1_Mus1 SINE Alu 1 148 0 3 1466 730 134 363 0 chr11 115602136 115602293 -6241563 + B3 SINE B2 3 216 0 3 1466 259 288 25 67 chr11 115602382 115602501 -6241355 + L1M4 LINE L1 5631 5744 -434 3 1466 1239 48 0 0 chr11 115602749 115602896 -6240960 + B1_Mus2 SINE Alu 1 147 0 3 1466 408 248 53 25 chr11 115602977 115603102 -6240754 + PB1D10 SINE Alu 2 124 -25 3 1466 650 240 7 46 chr11 115603102 115603255 -6240601 + RSINE1 SINE B4 2 148 -17 3 1466 240 111 0 0 chr11 115603390 115603435 -6240421 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 3 1466 1191 62 0 0 chr11 115603436 115603581 -6240275 - B1_Mm SINE Alu -2 145 1 3 1466 1705 26 0 0 chr11 115603591 115603784 -6240072 - B2_Mm1a SINE B2 0 193 1 3 1466 1058 144 193 0 chr11 115603808 115603989 -6239867 - B3 SINE B2 0 216 1 3 1466 452 304 43 5 chr11 115604228 115604413 -6239443 + L1MA5 LINE L1 5722 5913 -387 3 1466 785 206 7 0 chr11 115604580 115604721 -6239135 - B1F SINE Alu 0 149 8 3 1466 447 357 96 11 chr11 115604783 115605055 -6238801 - L2a LINE L2 -34 3392 3098 3 183 623 305 16 5 chr11 115605341 115605529 -6238327 + B3A SINE B2 1 190 -8 3 1467 569 270 0 38 chr11 115605602 115605760 -6238096 - ID_B1 SINE B4 -3 221 70 3 1467 947 231 9 92 chr11 115605767 115605996 -6237860 - B4 SINE B4 -1 291 82 3 1467 209 322 86 38 chr11 115606035 115606245 -6237611 - L2a LINE L2 -835 2584 2365 3 1467 488 214 0 11 chr11 115606296 115606386 -6237470 + PB1D7 SINE Alu 1 89 -31 3 1467 2454 68 3 47 chr11 115606387 115606674 -6237182 + ORR1A2 LTR MaLR 1 284 -43 3 1467 2269 54 0 0 chr11 115606674 115606952 -6236904 + L1Md_A LINE L1 6305 6582 0 3 1467 2454 68 3 47 chr11 115606952 115607006 -6236850 + ORR1A2 LTR MaLR 285 327 0 3 1467 354 164 0 32 chr11 115607006 115607069 -6236787 + B1F SINE Alu 86 146 -3 3 1467 2373 123 8 16 chr11 115607116 115607488 -6236368 - MTC LTR MaLR -22 399 31 3 1467 275 280 95 74 chr11 115607751 115607770 -6236086 - B2_Mm1a SINE B2 0 193 172 3 1467 1175 42 21 0 chr11 115607770 115607914 -6235942 - B1_Mus1 SINE Alu -1 147 1 3 1467 275 280 95 74 chr11 115607914 115607976 -6235880 - B2_Mm1a SINE B2 -22 171 1 3 1467 468 234 93 0 chr11 115607976 115608083 -6235773 - RSINE1 SINE B4 -47 118 2 3 1467 430 271 46 86 chr11 115608643 115608797 -6235059 - B3A SINE B2 -15 180 34 3 1467 204 149 0 0 chr11 115608912 115608959 -6234897 + (G)n Simple_repeat Simple_repeat 1 47 0 3 1467 259 310 120 33 chr11 115609081 115609114 -6234742 - B4A SINE B4 -41 251 89 3 1467 492 246 26 26 chr11 115609114 115609231 -6234625 - PB1 SINE Alu -7 120 4 3 1467 201 210 30 10 chr11 115609251 115609353 -6234503 + CT-rich Low_complexity Low_complexity 1 104 0 3 1467 264 290 50 148 chr11 115609466 115609648 -6234208 - B4A SINE B4 -126 166 3 3 1467 807 159 43 0 chr11 115609653 115609791 -6234065 - B1_Mur1 SINE Alu -5 144 1 3 1467 585 76 0 0 chr11 115609993 115610072 -6233784 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3 1467 1217 48 0 0 chr11 115610072 115610217 -6233639 - B1_Mus2 SINE Alu -2 145 1 3 1467 1563 47 0 16 chr11 115610241 115610435 -6233421 - B2_Mm1a SINE B2 -1 192 2 3 1467 239 268 109 103 chr11 115610610 115610628 -6233228 - B2_Mm1a SINE B2 -8 185 170 3 1467 264 122 0 0 chr11 115610628 115610669 -6233187 + (CTG)n Simple_repeat Simple_repeat 1 41 0 3 1467 615 229 64 0 chr11 115610669 115610826 -6233030 - B3A SINE B2 -23 175 9 3 1467 296 115 127 32 chr11 115610861 115610924 -6232932 - ID4_ SINE ID -13 70 2 3 1467 288 259 76 114 chr11 115611527 115611658 -6232198 + MT2B LTR ERVL 153 278 -323 3 1467 806 169 44 0 chr11 115611548 115611684 -6232172 + B1_Mur4 SINE Alu 8 149 -1 3 1467 618 14 0 0 chr11 115611749 115611820 -6232036 + (TTTCC)n Simple_repeat Simple_repeat 1 71 0 3 1467 1139 104 0 6 chr11 115611826 115612000 -6231856 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 3 1467 373 161 0 0 chr11 115612005 115612067 -6231789 - PB1D9 SINE Alu -28 92 31 3 1467 441 95 0 0 chr11 115612125 115612188 -6231668 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1467 553 157 46 0 chr11 115612207 115612315 -6231541 - B3A SINE B2 -83 115 3 3 1467 1251 91 102 0 chr11 115612330 115612506 -6231350 - B2_Mm2 SINE B2 -1 194 1 3 1467 910 162 198 16 chr11 115612603 115612785 -6231071 - B3 SINE B2 -1 215 1 3 1467 740 133 0 15 chr11 115612891 115613021 -6230835 + (TTTC)n Simple_repeat Simple_repeat 4 131 0 3 1467 885 215 82 5 chr11 115613032 115613238 -6230618 - ID_B1 SINE B4 -1 223 2 3 1467 318 236 54 33 chr11 115613287 115613379 -6230477 + ID_B1 SINE B4 112 205 -19 3 1467 342 0 0 0 chr11 115613390 115613428 -6230428 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1467 416 261 118 44 chr11 115613435 115613559 -6230297 + B1_Mur3 SINE Alu 4 141 -8 3 1467 243 0 0 0 chr11 115613559 115613586 -6230270 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1467 416 261 118 44 chr11 115613586 115613597 -6230259 + B1_Mur3 SINE Alu 142 149 0 3 1467 390 21 0 0 chr11 115613690 115613737 -6230119 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 3 1467 788 156 29 15 chr11 115613820 115613957 -6229899 + B1_Mur4 SINE Alu 5 143 -7 3 1467 213 287 11 54 chr11 115614267 115614359 -6229497 - L2b LINE L2 -258 3117 3030 3 1467 374 264 91 102 chr11 115614388 115614574 -6229282 + B4 SINE B4 41 224 -68 3 1467 883 38 7 64 chr11 115614437 115614578 -6229278 + B1_Mus2 SINE Alu 15 147 0 3 1467 861 156 20 20 chr11 115615022 115615172 -6228684 + B1_Mur4 SINE Alu 1 150 0 3 1467 2644 152 24 7 chr11 115615190 115615601 -6228255 + MTC LTR MaLR 1 418 -3 3 1467 1075 120 11 11 chr11 115615602 115615788 -6228068 + B2_Mm2 SINE B2 10 195 0 4 1467 1389 176 48 14 chr11 115615804 115616212 -6227644 + MTC-int LTR MaLR 2 514 -744 3 1467 2909 31 45 6 chr11 115616212 115616565 -6227291 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1467 53743 21 17 5 chr11 115616565 115622962 -6220894 - IAPEz-int LTR ERVK 0 6481 8 4 1467 2909 31 45 6 chr11 115622962 115623315 -6220541 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1467 2404 180 100 112 chr11 115623315 115623737 -6220119 + MTC-int LTR MaLR 509 979 -279 3 1467 1203 41 7 0 chr11 115623737 115623882 -6219974 - B1_Mus2 SINE Alu -1 146 1 4 1467 2404 180 100 112 chr11 115623882 115624037 -6219819 + MTC-int LTR MaLR 980 1084 -174 3 1467 1038 110 14 0 chr11 115624037 115624182 -6219674 - B1_Mus1 SINE Alu 0 148 2 4 1467 2404 180 100 112 chr11 115624182 115624193 -6219663 + MTC-int LTR MaLR 1085 1088 -170 3 1467 1347 91 5 5 chr11 115624193 115624380 -6219476 - B2_Mm1a SINE B2 -6 187 1 4 1467 2404 180 100 112 chr11 115624380 115624532 -6219324 + MTC-int LTR MaLR 1089 1242 -16 3 1467 299 135 0 52 chr11 115624554 115624671 -6219185 - B2_Mm2 SINE B2 -1 194 47 4 1467 1367 79 6 17 chr11 115624734 115624915 -6218941 - B2_Mm1t SINE B2 -14 179 1 4 1467 1914 143 80 148 chr11 115624915 115625367 -6218489 + MTC LTR MaLR 1 421 0 3 1467 1220 48 0 7 chr11 115625528 115625676 -6218180 - B1_Mus1 SINE Alu -1 147 1 4 1467 1197 61 0 0 chr11 115628637 115628784 -6215072 - B1_Mus1 SINE Alu 0 148 2 4 1467 277 255 45 18 chr11 115629116 115629129 -6214727 - L1MB3 LINE L1 -198 5985 5973 4 1467 1451 56 39 0 chr11 115629129 115629308 -6214548 - B2_Mm2 SINE B2 -9 186 1 4 1467 277 255 48 17 chr11 115629308 115629418 -6214438 - L1MB3 LINE L1 -211 5972 5855 4 1467 894 154 0 7 chr11 115629478 115629622 -6214234 + B1_Mur4 SINE Alu 6 148 -2 4 1467 374 67 50 0 chr11 115629788 115629848 -6214008 - URR1B DNA MER1_type -43 182 120 4 1467 316 184 32 65 chr11 115629848 115629880 -6213976 + CYRA11_Mm Unknown Y-chromosome 218 306 -311 4 1467 222 171 0 0 chr11 115629928 115629969 -6213887 + (CGTG)n Simple_repeat Simple_repeat 1 41 0 4 1467 463 304 120 50 chr11 115629981 115630314 -6213542 - Lx8 LINE L1 -1555 5918 5562 4 1467 672 229 7 35 chr11 115630314 115630459 -6213397 - B1_Mus2 SINE Alu -5 142 2 4 1467 463 329 107 70 chr11 115630459 115630673 -6213183 - Lx8 LINE L1 -319 5561 5333 4 1467 1220 61 0 0 chr11 115630673 115630820 -6213036 - B1_Mus2 SINE Alu 0 147 1 4 1467 463 329 107 70 chr11 115630820 115631053 -6212803 - Lx8 LINE L1 -548 5332 5092 4 1467 252 285 105 8 chr11 115631063 115631187 -6212669 - L1M4 LINE L1 -1194 4952 4817 4 1467 201 311 13 13 chr11 115631272 115631347 -6212509 + CT-rich Low_complexity Low_complexity 5 79 0 4 1467 493 293 0 0 chr11 115631453 115631576 -6212280 - B1F2 SINE Alu -16 133 11 4 1467 358 333 23 8 chr11 115631611 115631741 -6212115 + RSINE1 SINE B4 2 133 -32 4 1467 506 227 126 22 chr11 115631749 115631884 -6211972 + B1_Mur1 SINE Alu 1 149 0 4 1467 357 374 112 13 chr11 115632148 115632462 -6211394 - L3 LINE CR1 -719 3770 3426 4 1467 27 29 0 0 chr11 115632697 115632731 -6211125 + AT_rich Low_complexity Low_complexity 1 34 0 4 1467 1442 88 10 0 chr11 115632827 115633020 -6210836 + B2_Mm2 SINE B2 1 195 0 4 1467 341 243 157 48 chr11 115633151 115633298 -6210558 - RSINE1 SINE B4 0 165 3 4 1467 246 244 73 14 chr11 115633349 115633441 -6210415 + AluF_3 SINE Alu 147 198 -113 4 1467 264 127 0 0 chr11 115633713 115633768 -6210088 + (T)n Simple_repeat Simple_repeat 1 55 0 4 1467 1175 48 14 0 chr11 115633772 115633917 -6209939 - B1_Mm SINE Alu 0 147 1 4 1467 323 361 24 33 chr11 115633920 115634132 -6209724 - L1ME2 LINE L1 -244 5920 5711 4 1467 318 341 51 28 chr11 115634234 115634412 -6209444 - B3A SINE B2 -16 182 1 4 1467 315 0 0 0 chr11 115634414 115634449 -6209407 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1467 1535 58 16 0 chr11 115634489 115634678 -6209178 - B2_Mm2 SINE B2 -3 192 1 4 1467 413 272 17 9 chr11 115634678 115634793 -6209063 - RSINE1 SINE B4 -45 120 5 4 1467 1594 193 27 92 chr11 115634888 115635293 -6208563 - ORR1B1 LTR MaLR -2 392 9 4 1467 459 151 0 9 chr11 115635298 115635405 -6208451 - Lx9 LINE L1 -6 7638 7533 4 1467 996 149 0 7 chr11 115635418 115635567 -6208289 - B1_Mur1 SINE Alu 0 149 2 4 1467 1469 78 21 0 chr11 115635586 115635777 -6208079 - B2_Mm2 SINE B2 0 195 1 4 1467 423 35 0 0 chr11 115635796 115635853 -6208003 - B1_Mus2 SINE Alu 0 147 91 4 1467 2037 224 64 14 chr11 115635855 115636370 -6207486 - Lx9 LINE L1 -116 7528 6988 4 1467 507 170 0 0 chr11 115636483 115636583 -6207273 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 1467 426 233 83 41 chr11 115636587 115636708 -6207148 - RSINE1 SINE B4 -2 163 38 4 1467 384 376 36 31 chr11 115636769 115636994 -6206862 - MIRb SINE MIR -19 249 24 4 1467 386 297 70 8 chr11 115639117 115639246 -6204610 + B1F SINE Alu 1 137 -12 4 1467 536 158 8 30 chr11 115639660 115639776 -6204080 + T-rich Low_complexity Low_complexity 17 130 0 4 1467 1220 61 0 0 chr11 115639776 115639923 -6203933 - B1_Mus2 SINE Alu 0 147 1 4 1467 536 158 8 30 chr11 115639923 115639937 -6203919 + T-rich Low_complexity Low_complexity 3 16 0 4 1467 577 273 32 19 chr11 115639963 115640120 -6203736 - RSINE1 SINE B4 -3 162 4 4 1467 261 0 0 0 chr11 115640218 115640247 -6203609 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1467 333 246 52 136 chr11 115641068 115641214 -6202642 + B1_Mur2 SINE Alu 3 135 -14 4 1467 378 0 0 0 chr11 115641214 115641256 -6202600 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 4 1467 305 172 16 0 chr11 115641878 115641942 -6201914 + C-rich Low_complexity Low_complexity 6 70 0 4 1467 216 86 0 0 chr11 115642608 115642643 -6201213 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1467 682 172 102 0 chr11 115643330 115643458 -6200398 + B1_Mur2 SINE Alu 2 142 -7 4 1467 387 0 0 0 chr11 115644063 115644106 -6199750 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1467 225 119 0 0 chr11 115644898 115644940 -6198916 + (G)n Simple_repeat Simple_repeat 1 42 0 4 1467 189 0 0 0 chr11 115645269 115645290 -6198566 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1467 1088 60 8 0 chr11 115645290 115645424 -6198432 - B1_Mus2 SINE Alu -9 138 4 4 1467 243 0 0 0 chr11 115645740 115645767 -6198089 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1467 361 250 140 0 chr11 115645774 115645874 -6197982 - RSINE1 SINE B4 -49 116 3 4 1467 480 213 126 39 chr11 115645952 115646064 -6197792 + B1_Mur4 SINE Alu 13 140 -10 4 1467 324 0 0 0 chr11 115646064 115646100 -6197756 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1467 480 213 126 39 chr11 115646100 115646114 -6197742 + B1_Mur4 SINE Alu 141 150 0 4 1467 1398 157 255 20 chr11 115646265 115646622 -6197234 - RMER10A LTR ERVL 0 442 2 4 1467 236 30 30 0 chr11 115649023 115649056 -6194800 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1467 1252 48 0 0 chr11 115649059 115649206 -6194650 - B1_Mus2 SINE Alu 0 147 1 4 1467 420 279 45 0 chr11 115649331 115649442 -6194414 + PB1D10 SINE Alu 2 117 0 4 1467 231 155 47 94 chr11 115651770 115651784 -6192072 + ID_B1 SINE B4 78 135 -86 4 1467 246 93 0 85 chr11 115651784 115651831 -6192025 + PB1D9 SINE Alu 12 54 -66 4 1467 216 286 0 0 chr11 115651835 115652003 -6191853 + GA-rich Low_complexity Low_complexity 2 169 0 4 1467 339 177 0 31 chr11 115652004 115652068 -6191788 + (CAGAGA)n Simple_repeat Simple_repeat 1 62 0 4 1467 599 106 0 11 chr11 115652068 115652163 -6191693 + B1_Mus2 SINE Alu 42 135 -12 4 1467 180 0 0 0 chr11 115652164 115652184 -6191672 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1467 325 278 204 0 chr11 115654688 115654864 -6188992 + MIRc SINE MIR 16 227 -41 4 1467 420 111 0 0 chr11 115656141 115656204 -6187652 + (GGA)n Simple_repeat Simple_repeat 3 65 0 4 1467 364 264 90 9 chr11 115659448 115659559 -6184297 - PB1D10 SINE Alu -29 120 1 4 1467 186 103 0 0 chr11 115660246 115660275 -6183581 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1467 248 323 20 30 chr11 115665340 115665439 -6178417 + MIR SINE MIR 64 161 -101 4 1467 1296 81 38 5 chr11 115665446 115665632 -6178224 + B2_Mm1a SINE B2 1 192 -1 4 1467 326 245 101 40 chr11 115666604 115666795 -6177061 + B3 SINE B2 2 185 -13 4 1467 210 306 29 29 chr11 115667316 115667491 -6176365 + (CA)n Simple_repeat Simple_repeat 1 175 0 4 1467 220 320 38 28 chr11 115670480 115670586 -6173270 + MIRc SINE MIR 21 127 -141 4 1467 315 253 82 3 chr11 115671370 115671494 -6172362 + MIRc SINE MIR 16 147 -121 4 1467 273 340 39 0 chr11 115672828 115672931 -6170925 + L2a LINE L2 3313 3419 -7 4 1467 242 306 12 5 chr11 115672932 115673018 -6170838 - MIRm SINE MIR -116 160 73 4 1467 189 107 0 0 chr11 115676400 115676428 -6167428 + (CCGGG)n Simple_repeat Simple_repeat 3 30 0 4 1467 285 260 65 0 chr11 115677366 115677443 -6166413 - ID4_ SINE ID -1 82 1 4 1467 460 246 94 29 chr11 115677448 115677586 -6166270 - B1F SINE Alu 0 149 3 4 1467 2556 171 59 7 chr11 115677688 115678129 -6165727 - RMER4A LTR ERVK 0 466 3 4 1467 259 316 72 43 chr11 115678181 115678320 -6165536 + B1_Mur2 SINE Alu 4 146 -3 4 1467 1115 124 79 0 chr11 115678775 115678953 -6164903 - B2_Mm1t SINE B2 0 193 2 4 1467 225 0 0 0 chr11 115679227 115679252 -6164604 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1467 1258 34 0 13 chr11 115679252 115679402 -6164454 - B1_Mus1 SINE Alu 0 148 1 4 1467 1169 91 108 6 chr11 115679512 115679688 -6164168 - B2_Mm2 SINE B2 0 195 2 4 1467 761 225 165 13 chr11 115679894 115680124 -6163732 + B4 SINE B4 6 270 -22 4 1467 689 151 118 0 chr11 115680337 115680456 -6163400 + B1_Mur2 SINE Alu 5 137 -12 4 1467 842 113 0 8 chr11 115680456 115680590 -6163266 + (GGAA)n Simple_repeat Simple_repeat 4 136 0 4 1467 264 97 32 16 chr11 115680673 115680736 -6163120 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1467 1236 54 0 0 chr11 115680741 115680888 -6162968 - B1_Mus1 SINE Alu 0 148 2 4 1467 243 0 0 0 chr11 115680889 115680916 -6162940 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1467 888 121 38 8 chr11 115680916 115681049 -6162807 - B1_Mur4 SINE Alu -10 140 4 4 1467 289 244 26 0 chr11 115681122 115681200 -6162656 - ID4 SINE ID -1 82 3 5 1467 228 297 75 54 chr11 115683510 115683618 -6160238 - MIRb SINE MIR -134 134 22 5 1467 930 162 0 0 chr11 115686618 115686760 -6157096 - B1_Mus1 SINE Alu -2 146 5 5 1467 1048 135 0 0 chr11 115687017 115687165 -6156691 + B1_Mus1 SINE Alu 1 148 0 5 1467 601 263 31 25 chr11 115687222 115687382 -6156474 - RSINE1 SINE B4 -1 164 4 5 1467 333 294 0 84 chr11 115687474 115687570 -6156286 + PB1D7 SINE Alu 12 104 -16 5 1467 508 218 213 0 chr11 115687570 115687744 -6156112 - B3 SINE B2 -5 211 1 5 1467 333 294 0 84 chr11 115687744 115687766 -6156090 + PB1D7 SINE Alu 105 120 0 5 1467 188 306 104 8 chr11 115687884 115688004 -6155852 + MIRb SINE MIR 37 169 -107 5 1467 290 47 0 44 chr11 115688330 115688375 -6155481 + (TCTCCC)n Simple_repeat Simple_repeat 1 43 0 5 1467 222 116 0 0 chr11 115688375 115688418 -6155438 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1467 252 277 0 30 chr11 115689018 115689085 -6154771 - Charlie1 DNA MER1_type -2009 772 708 5 1467 22 0 0 0 chr11 115689269 115689291 -6154565 + AT_rich Low_complexity Low_complexity 1 22 0 5 1467 996 229 26 103 chr11 115691875 115692187 -6151669 - B4 SINE B4 -2 290 3 5 1467 275 279 64 34 chr11 115693427 115693574 -6150282 + MIR SINE MIR 30 183 -25 5 1467 220 203 129 14 chr11 115694560 115694630 -6149226 - BC1_Mm scRNA scRNA -74 78 1 5 1467 245 221 144 44 chr11 115695129 115695219 -6148637 - PB1D10 SINE Alu -12 105 7 5 1467 622 161 0 35 chr11 115696364 115696480 -6147376 - PB1D9 SINE Alu -2 118 7 5 1467 286 331 40 40 chr11 115696366 115696517 -6147339 - B4A SINE B4 -85 207 57 5 1467 209 412 34 26 chr11 115696556 115696673 -6147183 + MIRc SINE MIR 108 225 -43 5 1467 459 304 98 0 chr11 115698396 115698590 -6145266 - MER20 DNA MER1_type 0 219 7 5 1467 670 214 13 119 chr11 115698727 115698886 -6144970 - B1_Mur1 SINE Alu -5 144 3 5 1467 359 311 59 1 chr11 115699517 115699666 -6144190 + MIR SINE MIR 1 156 -112 5 1467 1032 177 62 29 chr11 115699711 115699920 -6143936 - B3 SINE B2 0 216 1 5 1467 207 0 0 0 chr11 115700780 115700803 -6143053 + (CAGGA)n Simple_repeat Simple_repeat 1 23 0 5 1467 910 82 0 50 chr11 115701904 115702045 -6141811 + B1_Mur4 SINE Alu 16 149 -1 5 1467 241 207 243 0 chr11 115702055 115702195 -6141661 - Charlie5 DNA MER1_type -14 2610 2437 5 1467 261 0 0 0 chr11 115702199 115702228 -6141628 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1467 1381 87 27 0 chr11 115702239 115702424 -6141432 - B2_Mm2 SINE B2 -5 190 1 5 1467 1038 209 48 0 chr11 115702458 115702664 -6141192 - B3 SINE B2 0 216 1 5 1467 641 219 36 14 chr11 115702905 115703044 -6140812 - ID_B1 SINE B4 -2 222 81 5 1467 364 184 190 9 chr11 115704226 115704247 -6139609 + B4 SINE B4 80 161 -131 5 1467 445 90 123 37 chr11 115704247 115704328 -6139528 + B1_Mur2 SINE Alu 18 105 -44 5 1467 364 184 190 9 chr11 115704328 115704339 -6139517 + B4 SINE B4 162 214 -78 5 1467 1015 72 0 0 chr11 115707048 115707187 -6136669 + B1_Mus1 SINE Alu 10 148 0 5 1467 253 0 54 0 chr11 115707187 115707224 -6136632 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 5 1467 785 203 138 11 chr11 115707232 115707421 -6136435 + B3 SINE B2 1 213 -3 5 1467 652 234 24 77 chr11 115707510 115707718 -6136138 + B3A SINE B2 2 198 0 5 1467 776 212 15 0 chr11 115707740 115707877 -6135979 - B1_Mur2 SINE Alu -10 139 1 5 1467 319 312 73 0 chr11 115707892 115707988 -6135868 - ID_B1 SINE B4 -18 206 104 5 1467 447 152 0 0 chr11 115708030 115708109 -6135747 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1467 252 261 29 0 chr11 115708700 115708769 -6135087 - MIR SINE MIR -62 146 76 5 1467 211 320 37 93 chr11 115710238 115710251 -6133605 - BC1_Mm scRNA scRNA -51 101 1 5 1467 333 287 11 0 chr11 115710251 115710263 -6133593 - RSINE1 SINE B4 -69 96 2 5 1467 631 49 0 0 chr11 115710263 115710345 -6133511 - B2_Mm2 SINE B2 -113 82 1 5 1467 210 37 0 0 chr11 115712745 115712772 -6131084 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1467 2534 122 91 3 chr11 115712845 115713231 -6130625 - MTC LTR MaLR -1 420 1 5 1467 783 76 246 0 chr11 115714104 115714222 -6129634 + B1_Mus1 SINE Alu 1 147 -1 5 1467 474 18 0 0 chr11 115717141 115717196 -6126660 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1467 566 207 17 0 chr11 115717539 115717655 -6126201 - B1_Mus2 SINE Alu -21 126 9 5 1467 519 17 0 0 chr11 115717675 115717735 -6126121 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1467 502 119 11 10 chr11 115717768 115717861 -6125995 + B1_Mur2 SINE Alu 35 149 0 5 1467 574 248 54 27 chr11 115717892 115718041 -6125815 + RSINE1 SINE B4 3 155 -10 5 1467 571 161 61 26 chr11 115718115 115718230 -6125626 + B1_Mm SINE Alu 28 146 -1 5 1467 805 136 49 14 chr11 115718339 115718481 -6125375 + B1_Mus1 SINE Alu 2 148 0 5 1467 1328 40 0 6 chr11 115718481 115718655 -6125201 + B2_Mm2 SINE B2 2 174 -21 5 1467 387 88 0 0 chr11 115718707 115718764 -6125092 + U4 snRNA snRNA 12 68 -77 5 1467 1429 70 48 0 chr11 115718779 115718965 -6124891 + B2_Mm2 SINE B2 1 195 0 5 1467 280 286 0 38 chr11 115719094 115719174 -6124682 + B3 SINE B2 1 77 -139 5 1467 516 16 0 0 chr11 115721983 115722044 -6121812 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1467 547 184 0 99 chr11 115722050 115722171 -6121685 + B1_Mur4 SINE Alu 24 132 -18 5 1467 306 0 0 0 chr11 115722181 115722215 -6121641 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1467 297 0 0 0 chr11 115722215 115722247 -6121609 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1467 392 313 14 51 chr11 115722270 115722408 -6121448 - RSINE1 SINE B4 -24 141 9 5 1467 282 336 0 46 chr11 115722426 115722535 -6121321 - PB1D10 SINE Alu 0 117 14 5 1467 218 130 161 36 chr11 115723785 115723841 -6120015 - B1_Mur4 SINE Alu 0 150 88 5 1467 279 0 0 0 chr11 115724986 115725017 -6118839 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1467 1324 14 0 0 chr11 115725017 115725163 -6118693 - B1_Mm SINE Alu -1 146 1 5 1467 1279 59 100 0 chr11 115725291 115725461 -6118395 + B2_Mm1a SINE B2 2 188 -5 5 1467 216 374 35 14 chr11 115725461 115725597 -6118259 - MIRb SINE MIR -71 197 59 5 1467 460 191 33 98 chr11 115725613 115725735 -6118121 - B1_Mur3 SINE Alu -35 114 1 5 1467 271 354 35 0 chr11 115726687 115726800 -6117056 + MIRc SINE MIR 71 187 -81 5 1467 615 234 16 11 chr11 115728159 115728312 -6115544 - B3 SINE B2 -5 211 66 5 1467 524 196 0 10 chr11 115728307 115728405 -6115451 - PB1D10 SINE Alu -11 106 10 5 1467 1035 190 74 15 chr11 115728740 115728943 -6114913 + B3 SINE B2 2 216 0 5 1467 840 167 58 0 chr11 115728978 115729116 -6114740 + B1_Mur3 SINE Alu 2 147 -2 5 1467 369 0 0 0 chr11 115729119 115729160 -6114696 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 5 1467 476 235 0 0 chr11 115729353 115729451 -6114405 + ID_B1 SINE B4 2 99 -125 5 1467 362 255 132 0 chr11 115729741 115729847 -6114009 + ID_B1 SINE B4 95 214 -10 5 1467 252 308 30 111 chr11 115729847 115729876 -6113980 + B1F2 SINE Alu 14 137 -12 5 1467 383 236 46 19 chr11 115729885 115729993 -6113863 + B1_Mur1 SINE Alu 21 131 -18 5 1467 671 244 62 34 chr11 115730033 115730211 -6113645 - B3 SINE B2 0 216 34 5 1467 225 0 0 0 chr11 115730211 115730236 -6113620 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1467 1172 44 0 0 chr11 115730237 115730373 -6113483 - B1_Mus2 SINE Alu -11 136 1 5 1467 277 371 102 36 chr11 115730402 115730676 -6113180 - Kanga2_a DNA Tc2 -568 320 29 5 1467 328 169 34 0 chr11 115731062 115731121 -6112735 - Lx8 LINE L1 -277 7196 7136 5 1467 459 304 82 0 chr11 115731162 115731297 -6112559 - RSINE1 SINE B4 -13 152 7 5 1467 939 231 20 0 chr11 115731372 115731575 -6112281 - B3 SINE B2 -9 207 1 5 1467 622 128 79 16 chr11 115731632 115731759 -6112097 - B1_Mus1 SINE Alu -1 147 13 5 1467 442 295 0 64 chr11 115731770 115731911 -6111945 - ID_B1 SINE B4 -1 223 92 5 1467 374 187 62 52 chr11 115732160 115732256 -6111600 + MT2B LTR ERVL 168 264 -337 5 1467 705 136 93 0 chr11 115732172 115732290 -6111566 + B1_Mus2 SINE Alu 18 146 -1 5 1467 201 310 0 0 chr11 115733361 115733419 -6110437 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1467 296 78 39 0 chr11 115734014 115734065 -6109791 + (CCCTG)n Simple_repeat Simple_repeat 2 54 0 5 1467 284 213 30 50 chr11 115734291 115734390 -6109466 - RMER17C LTR ERVK -149 261 165 5 1467 661 241 64 35 chr11 115734365 115734537 -6109319 - B3 SINE B2 -38 178 2 5 1467 229 26 0 50 chr11 115734634 115734674 -6109182 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1467 381 244 11 22 chr11 115735275 115735367 -6108489 - PB1D10 SINE Alu -25 92 2 5 1467 847 128 0 97 chr11 115735552 115735717 -6108139 - B1_Mur4 SINE Alu 0 150 2 5 1467 399 337 40 16 chr11 115735762 115735982 -6107874 - L1MB4 LINE L1 -158 6013 5790 5 1467 1205 69 0 0 chr11 115736091 115736235 -6107621 - B1_Mus1 SINE Alu -2 146 3 5 1467 444 254 139 0 chr11 115736246 115736410 -6107446 - B3A SINE B2 -5 211 29 5 1467 596 186 25 42 chr11 115736420 115736538 -6107318 - PB1D10 SINE Alu -1 116 1 5 183 859 279 45 0 chr11 115736554 115736755 -6107101 - B3 SINE B2 -5 211 2 6 1468 279 358 36 0 chr11 115736762 115736899 -6106957 - L1MB4 LINE L1 -846 5300 5159 5 1468 293 174 14 0 chr11 115736993 115737062 -6106794 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1468 762 11 0 0 chr11 115737169 115737256 -6106600 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 6 1468 529 190 34 0 chr11 115737256 115737377 -6106479 - B1_Mur2 SINE Alu -19 130 1 6 1468 192 77 0 0 chr11 115737382 115737408 -6106448 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 6 1468 476 316 137 18 chr11 115737411 115737630 -6106226 - B4A SINE B4 -46 246 2 6 1468 378 0 0 0 chr11 115737641 115737683 -6106173 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6 1468 346 225 49 12 chr11 115737683 115737758 -6106098 - B3 SINE B2 -12 204 126 6 1468 791 223 10 68 chr11 115737819 115738026 -6105830 + B3A SINE B2 1 195 -3 6 1468 294 230 168 23 chr11 115738032 115738135 -6105721 + B1F2 SINE Alu 1 120 0 6 1468 271 327 27 0 chr11 115739951 115740061 -6103795 + L1ME4a LINE L1 5819 5931 -193 6 1468 234 0 0 0 chr11 115740074 115740100 -6103756 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1468 704 22 0 0 chr11 115740100 115740189 -6103667 - B1_Mm SINE Alu 0 147 59 6 1468 872 161 14 14 chr11 115740209 115740354 -6103502 - B1_Mus2 SINE Alu -1 146 2 6 1468 399 178 0 83 chr11 115740379 115740489 -6103367 - PB1D9 SINE Alu -18 102 1 6 1468 501 352 8 82 chr11 115740531 115740788 -6103068 + B4A SINE B4 55 292 0 6 1468 180 111 0 0 chr11 115740788 115740815 -6103041 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1468 1423 85 32 0 chr11 115742015 115742203 -6101653 - B2_Mm2 SINE B2 0 195 2 6 1468 203 138 0 0 chr11 115743122 115743151 -6100705 + (CTGGGG)n Simple_repeat Simple_repeat 1 29 0 6 1468 1065 60 45 0 chr11 115743841 115743974 -6099882 + B1_Mus1 SINE Alu 1 139 -9 6 1468 317 43 0 21 chr11 115743978 115744026 -6099830 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1468 216 111 0 0 chr11 115744789 115744825 -6099031 + (GGA)n Simple_repeat Simple_repeat 2 37 0 6 1468 279 0 0 0 chr11 115746171 115746202 -6097654 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1468 1193 68 0 0 chr11 115746202 115746349 -6097507 - B1_Mus2 SINE Alu 0 147 1 6 1468 184 279 0 0 chr11 115746974 115747017 -6096839 + L2b LINE L2 3321 3363 -12 6 1468 621 131 20 0 chr11 115749835 115749988 -6093868 + (CCTG)n Simple_repeat Simple_repeat 2 157 0 6 1468 208 147 0 0 chr11 115750027 115750061 -6093795 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1468 21 0 0 0 chr11 115750079 115750100 -6093756 + AT_rich Low_complexity Low_complexity 1 21 0 6 1468 301 256 226 24 chr11 115750633 115750757 -6093099 - RSINE1 SINE B4 -12 153 5 6 1468 668 249 66 33 chr11 115750777 115750960 -6092896 - B3A SINE B2 -9 189 1 6 1468 188 289 19 58 chr11 115755498 115755601 -6088255 + L2 LINE L2 344 442 -2977 6 1468 384 206 111 20 chr11 115757592 115757691 -6086165 - PB1D10 SINE Alu -9 108 1 6 1468 1424 201 147 17 chr11 115757694 115758054 -6085802 + MTD LTR MaLR 12 418 -1 6 1468 581 214 70 17 chr11 115758680 115758854 -6085002 - B3 SINE B2 -7 188 1 6 1468 400 183 0 123 chr11 115759240 115759346 -6084510 - B1_Mus2 SINE Alu -2 145 53 6 1468 500 215 18 18 chr11 115759367 115759476 -6084380 - PB1D10 SINE Alu 0 117 9 6 1468 338 305 21 0 chr11 115759391 115759486 -6084370 - ID_B1 SINE B4 -48 176 80 6 1468 710 204 64 23 chr11 115759593 115759764 -6084092 + URR1B DNA MER1_type 5 182 -43 6 1468 1130 89 0 7 chr11 115760715 115760862 -6082994 - B1_Mus2 SINE Alu 0 147 2 6 1468 244 321 13 13 chr11 115765076 115765155 -6078701 + ID4_ SINE ID 3 81 -2 6 1468 394 228 54 0 chr11 115768731 115768823 -6075033 + PB1D9 SINE Alu 23 119 -1 6 1468 218 213 43 0 chr11 115768827 115768874 -6074982 + BC1_Mm scRNA scRNA 1 49 -103 6 1468 256 316 0 26 chr11 115768938 115769016 -6074840 - ID4 SINE ID -2 81 6 6 1468 732 185 0 82 chr11 115769114 115769261 -6074595 - B1_Mus1 SINE Alu -7 141 7 6 1468 204 67 0 0 chr11 115769272 115769302 -6074554 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1468 1238 28 7 7 chr11 115769302 115769448 -6074408 - B1_Mm SINE Alu 0 147 2 6 1468 821 190 16 26 chr11 115769460 115769659 -6074197 - B3 SINE B2 -1 194 2 6 1468 336 256 115 8 chr11 115769659 115769789 -6074067 - B1F2 SINE Alu -2 147 4 6 1468 310 330 138 32 chr11 115769792 115769980 -6073876 - MIR SINE MIR -43 219 12 6 1468 905 167 236 0 chr11 115771155 115771329 -6072527 + B3 SINE B2 2 216 0 6 1468 773 207 43 0 chr11 115771401 115771541 -6072315 - B1_Mur1 SINE Alu -3 146 1 6 1468 542 319 36 21 chr11 115771554 115771746 -6072110 - B3A SINE B2 -2 196 2 6 1468 1206 48 0 14 chr11 115771907 115772055 -6071801 + B1_Mm SINE Alu 1 146 -1 6 1468 209 59 0 56 chr11 115772069 115772105 -6071751 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1468 510 225 142 84 chr11 115772117 115772248 -6071608 + RSINE1 SINE B4 2 146 -19 6 1468 360 0 0 0 chr11 115772248 115772288 -6071568 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1468 510 225 142 84 chr11 115772288 115772311 -6071545 + RSINE1 SINE B4 147 165 0 6 1468 574 340 61 9 chr11 115772562 115772776 -6071080 - Tigger13a DNA MER2_type -486 285 61 6 1468 245 146 21 0 chr11 115773070 115773118 -6070738 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1468 292 311 65 16 chr11 115773918 115774042 -6069814 - B3 SINE B2 -4 212 83 6 1468 227 298 125 0 chr11 115774054 115774158 -6069698 - PB1 SINE Alu -10 117 1 6 1468 207 0 0 0 chr11 115774355 115774378 -6069478 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1468 1197 54 0 20 chr11 115774378 115774528 -6069328 - B1_Mus2 SINE Alu 0 147 1 6 1468 1060 235 9 18 chr11 115775601 115775818 -6068038 + B3 SINE B2 2 216 0 6 1468 21 36 0 0 chr11 115775864 115775892 -6067964 + AT_rich Low_complexity Low_complexity 1 28 0 6 1468 312 263 26 0 chr11 115777174 115777250 -6066606 + ID4_ SINE ID 3 80 -3 6 1468 387 255 26 52 chr11 115777730 115777846 -6066010 + PB1D10 SINE Alu 3 115 -2 6 1468 568 277 21 0 chr11 115778813 115778954 -6064902 + RSINE1 SINE B4 3 146 -19 6 1468 1176 176 15 0 chr11 115778987 115779192 -6064664 + B3 SINE B2 4 211 -5 6 1468 24 0 0 0 chr11 115779194 115779218 -6064638 + AT_rich Low_complexity Low_complexity 1 24 0 6 1468 741 169 54 0 chr11 115779227 115779357 -6064499 + B1_Mus1 SINE Alu 1 137 -11 6 1468 691 217 86 41 chr11 115779577 115779774 -6064082 + B3 SINE B2 1 206 -10 6 1468 804 94 8 30 chr11 115779836 115779967 -6063889 - B1_Mur4 SINE Alu -13 137 10 6 1468 411 68 0 0 chr11 115779983 115780042 -6063814 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6 1468 771 187 130 6 chr11 115780050 115780227 -6063629 - B3 SINE B2 -17 199 1 6 1468 1031 92 31 10 chr11 115780247 115780411 -6063445 - B1_Mus1 SINE Alu 0 311 1 6 1468 496 236 38 83 chr11 115780271 115780428 -6063428 - B4 SINE B4 -74 218 69 6 1468 258 293 12 47 chr11 115780514 115780600 -6063256 - ID4 SINE ID 0 83 1 6 1468 1110 194 14 0 chr11 115780985 115781196 -6062660 - B3 SINE B2 -1 215 2 6 1468 210 203 25 0 chr11 115781202 115781320 -6062536 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 1468 1063 115 12 0 chr11 115781328 115781493 -6062363 - B2_Mm1t SINE B2 -6 187 21 6 1468 487 243 18 18 chr11 115781539 115781652 -6062204 - B3 SINE B2 -4 212 100 6 1468 276 105 105 0 chr11 115781743 115781800 -6062056 - B2_Mm1t SINE B2 0 193 131 6 1468 1229 70 36 36 chr11 115781801 115781994 -6061862 - B2_Mm2 SINE B2 0 195 3 6 1468 183 42 0 0 chr11 115782076 115782100 -6061756 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1468 1131 48 0 20 chr11 115782100 115782242 -6061614 - B1_Mus1 SINE Alu -7 141 3 6 1468 496 92 0 0 chr11 115782260 115782347 -6061509 - L1Md_F3 LINE L1 0 6584 6498 6 1468 480 184 28 28 chr11 115782397 115782503 -6061353 - B1F SINE Alu 0 149 44 6 1468 414 0 0 0 chr11 115782546 115782592 -6061264 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1468 718 218 20 26 chr11 115782598 115782749 -6061107 - B3A SINE B2 -48 150 1 6 1468 225 170 38 0 chr11 115782901 115782954 -6060902 - B4A SINE B4 -113 179 125 6 1468 246 269 48 71 chr11 115783089 115783173 -6060683 - ID4_ SINE ID -1 82 1 6 1468 269 313 104 0 chr11 115783173 115783288 -6060568 - B1F2 SINE Alu -1 148 22 6 1468 491 250 45 32 chr11 115783370 115783527 -6060329 + RSINE1 SINE B4 5 163 -2 6 1468 729 168 51 7 chr11 115783546 115783684 -6060172 + B1_Mus2 SINE Alu 3 146 -1 6 1468 1614 21 0 0 chr11 115784067 115784255 -6059601 + B2_Mm1a SINE B2 2 189 -4 6 1468 709 211 27 0 chr11 115784911 115785058 -6058798 + B3 SINE B2 2 152 -64 6 1468 385 271 131 0 chr11 115785115 115785237 -6058619 + B1_Mur1 SINE Alu 2 139 -10 6 1468 352 298 65 87 chr11 115785250 115785434 -6058422 + B3A SINE B2 1 180 -18 6 1468 1134 63 0 0 chr11 115785551 115785693 -6058163 - B1_Mus2 SINE Alu -5 142 1 6 1468 185 235 0 0 chr11 115785728 115785762 -6058094 - MIRm SINE MIR -10 266 233 6 1468 1101 55 7 7 chr11 115786336 115786484 -6057372 - B1_Mus1 SINE Alu 0 148 1 7 1468 194 265 0 0 chr11 115786949 115786998 -6056858 + MIRc SINE MIR 64 112 -156 7 1468 679 229 29 0 chr11 115787015 115787155 -6056701 + B1F2 SINE Alu 1 144 -5 7 1468 24 0 0 0 chr11 115787240 115787264 -6056592 + AT_rich Low_complexity Low_complexity 1 24 0 7 1468 370 228 36 0 chr11 115787289 115787361 -6056495 + B3 SINE B2 3 85 -110 7 1468 230 158 0 0 chr11 115787361 115787399 -6056457 + RLTR13D3 LTR ERVK 1 38 -1076 7 1468 31 44 0 0 chr11 115787777 115787822 -6056034 + AT_rich Low_complexity Low_complexity 1 45 0 7 1468 278 160 0 0 chr11 115787854 115787904 -6055952 + B2_Mm2 SINE B2 1 50 -145 7 1468 324 241 67 60 chr11 115788147 115788314 -6055542 + RLTR13D3 LTR ERVK 943 1072 -42 7 1468 649 221 52 0 chr11 115788314 115788450 -6055406 + B3 SINE B2 70 212 -4 7 1468 180 0 0 0 chr11 115788899 115788919 -6054937 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1468 466 218 66 22 chr11 115788930 115789066 -6054790 + B1_Mur2 SINE Alu 3 144 -5 7 1468 525 302 36 62 chr11 115790101 115790266 -6053590 + ID_B1 SINE B4 79 243 -49 7 1468 646 168 56 42 chr11 115790267 115790410 -6053446 + B1_Mur3 SINE Alu 5 149 0 7 1468 397 229 47 115 chr11 115790800 115790948 -6052908 + B1_Mur1 SINE Alu 12 149 0 7 1468 945 149 109 0 chr11 115790952 115791127 -6052729 + B2_Mm2 SINE B2 2 195 0 7 1468 207 0 0 0 chr11 115791313 115791336 -6052520 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1468 300 53 0 0 chr11 115791336 115791374 -6052482 + (GA)n Simple_repeat Simple_repeat 2 39 0 7 1468 348 226 58 35 chr11 115791431 115791518 -6052338 - B3 SINE B2 -127 89 1 7 1468 233 299 15 0 chr11 115791589 115791656 -6052200 + PB1D10 SINE Alu 18 85 -32 7 1468 35 24 0 0 chr11 115791656 115791698 -6052158 + AT_rich Low_complexity Low_complexity 1 42 0 7 1468 994 110 7 0 chr11 115792203 115792349 -6051507 - B1_Mus2 SINE Alu 0 147 1 7 1468 495 276 21 0 chr11 115792350 115792495 -6051361 - B1F2 SINE Alu 0 149 2 7 1468 817 182 0 0 chr11 115793116 115793259 -6050597 + B1_Mus2 SINE Alu 5 147 0 7 1468 534 189 0 78 chr11 115793288 115793403 -6050453 + B1_Mur1 SINE Alu 43 148 -1 7 1468 521 254 0 9 chr11 115793805 115793920 -6049936 + B1F2 SINE Alu 10 123 -26 7 1468 372 283 38 30 chr11 115793920 115793936 -6049920 + ID_B1 SINE B4 91 222 -2 7 1468 271 261 14 0 chr11 115795874 115795943 -6047913 - ID4 SINE ID -11 72 3 7 1468 387 256 89 44 chr11 115795981 115796116 -6047740 - B3A SINE B2 0 198 58 7 1468 350 259 35 0 chr11 115796102 115796187 -6047669 - B1_Mur3 SINE Alu -57 92 5 7 1468 645 144 120 8 chr11 115796232 115796365 -6047491 - B1_Mur2 SINE Alu 0 149 2 7 1468 299 128 229 105 chr11 115796373 115796478 -6047378 - BC1_Mm scRNA scRNA -34 118 1 7 1468 329 109 18 0 chr11 115796616 115796671 -6047185 + (TCTCCC)n Simple_repeat Simple_repeat 2 57 0 7 1468 280 153 108 27 chr11 115796887 115796961 -6046895 + ID4 SINE ID 4 83 0 7 1468 251 283 31 117 chr11 115797089 115797217 -6046639 - PB1D10 SINE Alu 0 117 1 7 1468 466 134 0 79 chr11 115797911 115798000 -6045856 + ID4 SINE ID 2 83 0 7 1468 396 0 0 0 chr11 115798130 115798174 -6045682 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1468 302 278 109 34 chr11 115798174 115798293 -6045563 + ID_B1 SINE B4 40 167 -57 7 1468 473 104 13 0 chr11 115798329 115798406 -6045450 + (TG)n Simple_repeat Simple_repeat 2 79 0 7 1468 371 259 131 69 chr11 115799912 115800157 -6043699 - MER2 DNA MER2_type 0 345 86 7 1468 1479 58 54 5 chr11 115800568 115800792 -6043064 - L1_Mus3 LINE L1 -6 6632 6398 7 1468 198 0 0 0 chr11 115800895 115800917 -6042939 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1468 616 225 49 7 chr11 115800918 115801061 -6042795 - B3 SINE B2 -66 150 2 7 1468 266 188 267 0 chr11 115801247 115801348 -6042508 - Charlie1b DNA MER1_type -1 522 395 7 1468 467 250 0 61 chr11 115801398 115801513 -6042343 + B4A SINE B4 185 292 0 7 1468 387 0 0 0 chr11 115801580 115801623 -6042233 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1468 359 155 320 0 chr11 115801627 115801730 -6042126 - B1_Mus2 SINE Alu -11 136 1 7 1468 386 236 54 18 chr11 115801731 115801843 -6042013 - B1F SINE Alu 0 149 34 7 1468 187 261 27 55 chr11 115801925 115801998 -6041858 + MIRb SINE MIR 122 192 -76 7 1468 476 163 0 71 chr11 115802338 115802437 -6041419 + B1_Mur4 SINE Alu 59 150 0 7 1468 528 239 92 0 chr11 115802581 115802711 -6041145 + B1_Mur2 SINE Alu 8 149 0 7 1468 457 250 39 101 chr11 115802688 115802866 -6040990 + B4 SINE B4 57 223 -69 7 1468 1047 37 0 0 chr11 115802734 115802868 -6040988 + B1_Mus1 SINE Alu 15 148 0 7 1468 312 250 68 106 chr11 115802948 115803109 -6040747 - RSINE1 SINE B4 0 165 11 7 1468 343 200 71 0 chr11 115803123 115803208 -6040648 - PB1D7 SINE Alu -1 119 29 7 1468 302 255 181 0 chr11 115803968 115804062 -6039794 + PB1D10 SINE Alu 1 111 -6 7 1468 1058 109 0 0 chr11 115804072 115804219 -6039637 + B1_Mus1 SINE Alu 1 147 -1 7 1468 377 224 133 0 chr11 115804240 115804338 -6039518 + PB1D9 SINE Alu 2 112 -8 7 1468 204 40 0 0 chr11 115804468 115804493 -6039363 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 7 1468 360 0 0 0 chr11 115804549 115804589 -6039267 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1468 333 100 0 0 chr11 115804611 115804661 -6039195 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1468 579 272 20 30 chr11 115805117 115805314 -6038542 - B3A SINE B2 -2 196 2 7 1468 475 214 7 90 chr11 115805681 115805825 -6038031 + B1F SINE Alu 17 148 -1 7 1468 262 197 0 43 chr11 115805965 115806034 -6037822 + PB1D7 SINE Alu 54 119 -1 7 1468 516 244 16 32 chr11 115806037 115806160 -6037696 + B3 SINE B2 1 121 -95 7 1468 741 188 38 0 chr11 115807024 115807157 -6036699 - B1_Mur3 SINE Alu 0 149 12 7 1468 487 208 29 10 chr11 115808235 115808337 -6035519 - PB1D7 SINE Alu -10 110 7 7 1468 313 253 20 40 chr11 115808260 115808359 -6035497 - B4A SINE B4 -125 167 71 7 1468 345 259 107 0 chr11 115808658 115808770 -6035086 - PB1 SINE Alu -3 124 1 7 1468 223 361 32 32 chr11 115808814 115808937 -6034919 + ID_B1 SINE B4 50 172 -52 7 1468 383 250 28 28 chr11 115808857 115808964 -6034892 + PB1D10 SINE Alu 11 117 0 7 1468 228 35 0 0 chr11 115809447 115809476 -6034380 + (CTTTG)n Simple_repeat Simple_repeat 1 29 0 7 1468 305 261 0 0 chr11 115809482 115809551 -6034305 - B1_Mus1 SINE Alu -64 84 16 7 1468 597 180 0 51 chr11 115810263 115810380 -6033476 - PB1D9 SINE Alu -9 111 1 7 1468 229 316 0 0 chr11 115810485 115810561 -6033295 - PB1D10 SINE Alu -37 80 5 7 1468 209 57 29 0 chr11 115814304 115814339 -6029517 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1468 380 303 99 41 chr11 115814342 115814514 -6029342 + B3A SINE B2 1 182 -16 7 1468 265 214 81 23 chr11 115814899 115814985 -6028871 - ID_B1 SINE B4 0 224 134 7 1468 306 277 38 92 chr11 115814945 115815076 -6028780 - B1F SINE Alu -25 124 1 7 1468 198 103 0 0 chr11 115815290 115815319 -6028537 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7 1468 1179 41 0 0 chr11 115815319 115815465 -6028391 - B1_Mus2 SINE Alu 0 147 2 7 1468 217 293 28 75 chr11 115817207 115817218 -6026638 + ID SINE ID 77 82 -142 7 1468 300 266 71 41 chr11 115817218 115817316 -6026540 + B1F1 SINE Alu 2 102 -47 7 1468 23 68 0 0 chr11 115817550 115817594 -6026262 + AT_rich Low_complexity Low_complexity 1 44 0 7 1468 284 312 0 0 chr11 115817625 115817753 -6026103 + C-rich Low_complexity Low_complexity 1 128 0 7 1468 295 328 0 74 chr11 115818278 115818413 -6025443 + MER63B DNA AcHobo 276 400 -36 7 1468 217 138 52 0 chr11 115819646 115819704 -6024152 + (CAGCC)n Simple_repeat Simple_repeat 5 65 0 7 1468 486 126 63 0 chr11 115819708 115820031 -6023825 + (CACAG)n Simple_repeat Simple_repeat 1 343 0 7 1468 1080 82 7 0 chr11 115820093 115820240 -6023616 - B1_Mus1 SINE Alu 0 148 1 7 1468 353 160 42 160 chr11 115820800 115820816 -6023040 + MT2B LTR ERVL 153 154 -447 7 1468 780 67 32 32 chr11 115820816 115820939 -6022917 + B1_Mus1 SINE Alu 1 123 -25 7 1468 1205 97 32 0 chr11 115821013 115821198 -6022658 - B2_Mm1a SINE B2 0 193 3 7 1468 663 130 64 64 chr11 115821198 115821338 -6022518 + B1_Mur4 SINE Alu 11 150 0 7 1468 261 0 0 0 chr11 115821393 115821422 -6022434 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7 1468 570 164 8 113 chr11 115822230 115822354 -6021502 - PB1D9 SINE Alu -9 111 1 7 1468 215 281 24 30 chr11 115823897 115824066 -6019790 + (GGGTG)n Simple_repeat Simple_repeat 1 168 0 7 1468 766 195 53 21 chr11 115824637 115824826 -6019030 - B2_Mm2 SINE B2 0 195 1 7 1468 320 299 72 0 chr11 115827118 115827215 -6016641 - PB1D10 SINE Alu -13 104 1 7 1468 578 265 37 0 chr11 115827215 115827266 -6016590 - ID SINE ID -139 85 30 7 1468 311 341 47 26 chr11 115827338 115827528 -6016328 - MTE2b LTR MaLR -185 194 1 7 1468 783 147 0 29 chr11 115827904 115828044 -6015812 - B1_Mur3 SINE Alu -13 136 1 7 1468 230 306 0 23 chr11 115828187 115828274 -6015582 + B4A SINE B4 201 285 -7 8 1468 364 265 123 47 chr11 115828474 115828644 -6015212 + B3A SINE B2 14 196 -2 8 1468 1092 50 43 0 chr11 115828995 115829135 -6014721 + B1_Mus2 SINE Alu 2 147 0 8 1468 268 300 105 32 chr11 115829145 115829269 -6014587 - B1F SINE Alu -16 133 1 8 1468 455 230 56 62 chr11 115829398 115829542 -6014314 + B4 SINE B4 56 198 -94 8 1468 829 81 8 0 chr11 115829443 115829566 -6014290 + B1_Mus1 SINE Alu 10 133 -15 8 1468 508 220 0 33 chr11 115829560 115829682 -6014174 - B3 SINE B2 -98 118 1 8 1468 938 93 0 51 chr11 115829711 115829869 -6013987 + B1_Mur4 SINE Alu 1 150 0 8 1468 412 265 10 10 chr11 115829953 115830052 -6013804 + RSINE1 SINE B4 13 111 -54 8 1468 200 164 15 0 chr11 115830318 115830385 -6013471 + T-rich Low_complexity Low_complexity 4 71 0 8 1468 342 0 0 0 chr11 115830388 115830426 -6013430 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 8 1468 189 0 0 0 chr11 115830804 115830825 -6013031 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1468 189 0 0 0 chr11 115830825 115830845 -6013011 + (GA)n Simple_repeat Simple_repeat 1 21 0 8 1468 557 269 78 22 chr11 115830928 115831107 -6012749 - B3 SINE B2 -4 212 24 8 1468 710 172 96 15 chr11 115831157 115831293 -6012563 - B1_Mur1 SINE Alu -1 148 2 8 1468 460 273 91 26 chr11 115831306 115831460 -6012396 - RSINE1 SINE B4 0 165 2 8 1468 211 225 0 0 chr11 115831899 115831939 -6011917 + B4A SINE B4 35 74 -218 8 1468 241 292 138 58 chr11 115831985 115832123 -6011733 + B4 SINE B4 144 292 0 8 1468 335 356 67 40 chr11 115832312 115832537 -6011319 - B4A SINE B4 0 292 62 8 1468 804 162 35 23 chr11 115832720 115832903 -6010953 + B3 SINE B2 1 187 -8 8 1468 308 240 83 37 chr11 115832985 115833093 -6010763 - B1F SINE Alu -5 144 32 8 1468 240 305 36 66 chr11 115833093 115833122 -6010734 + YREP_Mm Unknown Unknown 182 314 -1498 8 1468 574 237 6 82 chr11 115833144 115833314 -6010542 + RSINE1 SINE B4 1 157 -8 8 1468 564 204 55 9 chr11 115833324 115833433 -6010423 - PB1D9 SINE Alu -6 114 1 8 1468 264 59 0 0 chr11 115833446 115833480 -6010376 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 8 1468 330 255 17 43 chr11 115833482 115833597 -6010259 - Lx4B LINE L1 -4 7054 6943 8 1468 1396 75 5 16 chr11 115833842 115834031 -6009825 + B2_Mm1a SINE B2 1 187 -6 8 1468 1150 99 60 16 chr11 115834031 115834215 -6009641 - B2_Mm2 SINE B2 -1 194 3 8 1468 1150 62 7 7 chr11 115834277 115834424 -6009432 - B1_Mus2 SINE Alu 0 147 1 8 1468 758 154 29 22 chr11 115834673 115834812 -6009044 - B1_Mur1 SINE Alu -1 148 9 8 1468 180 0 0 0 chr11 115834980 115835000 -6008856 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1468 189 139 0 0 chr11 115835044 115835087 -6008769 + (A)n Simple_repeat Simple_repeat 1 43 0 8 1468 566 287 5 103 chr11 115835248 115835442 -6008414 + ID_B1 SINE B4 2 176 -48 8 1468 21 0 0 0 chr11 115836374 115836395 -6007461 + GC_rich Low_complexity Low_complexity 1 21 0 8 1468 250 340 105 0 chr11 115837316 115837478 -6006378 - Charlie8 DNA MER1_type -2213 215 37 8 1468 261 0 0 0 chr11 115837515 115837544 -6006312 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1468 224 256 44 55 chr11 115838870 115838917 -6004939 - B4 SINE B4 -110 182 93 8 1468 240 204 0 0 chr11 115838917 115838961 -6004895 - B1F SINE Alu -98 51 8 8 1468 383 306 33 8 chr11 115839501 115839623 -6004233 + MER63B DNA AcHobo 302 426 -10 8 1468 183 259 120 77 chr11 115839744 115839861 -6003995 - L2b LINE L2 -2 3373 3252 8 1468 613 297 32 11 chr11 115839982 115840169 -6003687 + RMER30 DNA MER1_type 12 202 0 8 1468 193 358 0 58 chr11 115840220 115840306 -6003550 + MIRc SINE MIR 44 124 -144 8 1468 1144 195 10 0 chr11 115841523 115841723 -6002133 + B3 SINE B2 1 202 -14 8 1468 721 76 0 17 chr11 115841723 115841843 -6002013 + (GAAAA)n Simple_repeat Simple_repeat 2 119 0 8 1468 455 342 30 60 chr11 115842802 115842970 -6000886 - RSINE1 SINE B4 0 165 3 8 1468 323 298 114 55 chr11 115843189 115843213 -6000643 - ORR1C1 LTR MaLR -10 349 322 8 1468 1180 36 43 0 chr11 115843213 115843353 -6000503 - B1_Mus2 SINE Alu 0 147 2 8 1468 1273 150 196 4 chr11 115843353 115843634 -6000222 - ORR1C1 LTR MaLR -43 335 1 8 1468 1123 89 0 0 chr11 115845687 115845833 -5998023 + B1_Mm SINE Alu 1 146 -1 8 1468 827 95 0 16 chr11 115845845 115845973 -5997883 + (GAAA)n Simple_repeat Simple_repeat 2 127 0 8 1468 218 209 284 0 chr11 115845976 115846043 -5997813 + B1F SINE Alu 19 104 -45 8 1468 617 186 17 0 chr11 115846043 115846161 -5997695 + B1_Mur3 SINE Alu 30 149 0 8 1468 357 24 0 0 chr11 115846184 115846226 -5997630 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1468 254 128 0 0 chr11 115846226 115846265 -5997591 + B1F SINE Alu 99 137 -12 8 1468 296 265 153 0 chr11 115846634 115846732 -5997124 - PB1D10 SINE Alu -4 113 1 8 1468 555 107 0 0 chr11 115846743 115846827 -5997029 + (TCC)n Simple_repeat Simple_repeat 2 85 0 8 1468 394 252 129 64 chr11 115847110 115847127 -5996729 + ID_B1 SINE B4 76 224 0 8 1468 561 147 114 57 chr11 115847127 115847250 -5996606 + B1_Mur1 SINE Alu 19 148 -1 8 1468 285 267 47 33 chr11 115847337 115847431 -5996425 + PB1 SINE Alu 37 111 -16 8 1468 274 261 15 0 chr11 115847437 115847502 -5996354 + PB1D9 SINE Alu 44 109 -11 8 1468 1136 82 0 13 chr11 115847502 115847639 -5996217 + B1_Mus2 SINE Alu 1 137 -10 8 1468 272 48 24 0 chr11 115847639 115847681 -5996175 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1468 1136 82 0 13 chr11 115847681 115847692 -5996164 + B1_Mus2 SINE Alu 138 147 0 8 1468 220 283 59 42 chr11 115847770 115847900 -5995956 + MIRm SINE MIR 50 180 -88 8 1468 209 219 0 0 chr11 115848582 115848623 -5995233 - L2a LINE L2 -11 3415 3375 8 1468 476 288 53 0 chr11 115848687 115848819 -5995037 - RSINE1 SINE B4 -10 155 17 8 1468 293 240 41 10 chr11 115849206 115849303 -5994553 - RSINE1 SINE B4 -64 101 2 8 1468 225 0 73 24 chr11 115849315 115849356 -5994500 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 8 1468 1127 70 0 0 chr11 115849356 115849498 -5994358 - B1_Mus1 SINE Alu -2 146 5 8 1468 296 258 12 12 chr11 115850345 115850440 -5993416 + B1_Mur3 SINE Alu 7 101 -19 8 1468 726 21 0 40 chr11 115851411 115851511 -5992345 + B1_Mus2 SINE Alu 51 146 -1 8 1468 441 213 234 26 chr11 115851660 115851814 -5992042 + B4A SINE B4 107 292 0 8 1468 417 198 0 0 chr11 115851814 115851905 -5991951 + (CA)n Simple_repeat Simple_repeat 1 91 0 8 1468 404 291 38 38 chr11 115853678 115853846 -5990010 - MIRb SINE MIR -83 185 11 8 1468 264 30 0 0 chr11 115853929 115853962 -5989894 + (GGA)n Simple_repeat Simple_repeat 1 33 0 8 1468 1172 106 0 6 chr11 115853975 115854155 -5989701 + (GGA)n Simple_repeat Simple_repeat 2 180 0 8 1468 555 136 9 18 chr11 115854156 115854268 -5989588 + GA-rich Low_complexity Low_complexity 2 112 0 8 1468 256 280 40 0 chr11 115854856 115854931 -5988925 + MIRm SINE MIR 87 164 -112 8 1468 319 236 125 0 chr11 115854987 115855059 -5988797 - ID4 SINE ID -1 82 2 8 1468 940 98 238 0 chr11 115855383 115855526 -5988330 + B2_Mm2 SINE B2 1 177 -18 8 1468 514 182 9 66 chr11 115855976 115856082 -5987774 - B1_Mur3 SINE Alu -47 102 3 8 1468 752 263 51 31 chr11 115856114 115856310 -5987546 - B3 SINE B2 -11 205 6 8 1468 1196 55 0 0 chr11 115856353 115856499 -5987357 - B1_Mus2 SINE Alu 0 147 2 8 1468 676 192 15 0 chr11 115856509 115856639 -5987217 - B1_Mur2 SINE Alu -6 143 12 8 1468 323 299 63 89 chr11 115856639 115856658 -5987198 - B4 SINE B4 -64 185 75 8 1468 748 138 12 127 chr11 115856855 115857021 -5986835 + B1_Mus2 SINE Alu 1 147 0 8 1468 323 227 13 13 chr11 115857052 115857128 -5986728 + PB1D10 SINE Alu 42 117 0 8 1468 263 235 0 0 chr11 115857130 115857181 -5986675 + B3A SINE B2 1 51 -147 8 1468 213 258 147 29 chr11 115857192 115857260 -5986596 + B3A SINE B2 97 172 -26 8 1468 880 123 0 55 chr11 115857319 115857465 -5986391 + B1_Mus2 SINE Alu 10 147 0 8 1468 252 0 0 0 chr11 115857574 115857602 -5986254 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1468 207 0 0 0 chr11 115857602 115857624 -5986232 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1468 207 0 0 0 chr11 115857654 115857677 -5986179 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 8 1468 799 155 47 0 chr11 115857682 115857811 -5986045 - B1_Mur2 SINE Alu -13 136 2 8 1468 237 338 6 118 chr11 115857832 115857914 -5985942 + B1_Mur1 SINE Alu 2 65 -84 8 1468 667 281 5 48 chr11 115857914 115858001 -5985855 + ID SINE ID 3 80 -144 8 1468 852 99 0 0 chr11 115858001 115858122 -5985734 + B1_Mus1 SINE Alu 2 122 -26 8 1468 575 269 47 29 chr11 115858116 115858288 -5985568 + ID_B1 SINE B4 11 185 -39 8 1468 392 246 26 26 chr11 115858359 115858476 -5985380 - PB1D10 SINE Alu 0 117 1 8 1468 990 129 14 0 chr11 115858677 115858824 -5985032 + B1_Mur3 SINE Alu 1 149 0 8 1468 249 333 57 49 chr11 115858855 115858978 -5984878 + B3A SINE B2 58 181 -17 8 1468 916 62 7 48 chr11 115859689 115859960 -5983896 + (TG)n Simple_repeat Simple_repeat 1 259 0 8 1468 1719 31 0 0 chr11 115860063 115860255 -5983601 - B2_Mm1t SINE B2 -1 192 1 8 1468 440 234 179 12 chr11 115860287 115860460 -5983396 - B3 SINE B2 -2 214 13 8 1468 610 139 180 0 chr11 115860806 115860928 -5982928 - B1_Mur4 SINE Alu 0 150 7 8 1468 326 262 12 0 chr11 115862290 115862370 -5981486 + PB1 SINE Alu 40 120 -7 8 1468 207 0 0 0 chr11 115862370 115862393 -5981463 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1468 789 209 71 43 chr11 115862402 115862612 -5981244 + ID_B1 SINE B4 2 217 -7 9 1468 315 71 0 0 chr11 115862624 115862666 -5981190 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1468 393 225 0 0 chr11 115862750 115862821 -5981035 + ID4_ SINE ID 2 72 -11 9 1468 245 247 0 110 chr11 115863376 115863458 -5980398 - PB1D7 SINE Alu -27 93 21 9 1468 340 305 0 10 chr11 115863508 115863604 -5980252 - B1F2 SINE Alu -21 128 34 9 1468 997 73 0 0 chr11 115863646 115863782 -5980074 + B1_Mus1 SINE Alu 10 145 -3 9 1468 801 31 0 0 chr11 115863782 115863878 -5979978 + (TG)n Simple_repeat Simple_repeat 2 97 0 9 1468 408 224 0 0 chr11 115863881 115863957 -5979899 - RSINE1 SINE B4 -42 123 48 9 1468 959 134 117 0 chr11 115864344 115864515 -5979341 - B2_Mm2 SINE B2 -4 191 1 9 1468 227 103 26 0 chr11 115865690 115865729 -5978127 + (TTC)n Simple_repeat Simple_repeat 3 42 0 9 1468 313 256 0 60 chr11 115865743 115865826 -5978030 - B1_Mur1 SINE Alu -9 140 63 9 1468 186 238 79 0 chr11 115865915 115865978 -5977878 - MIRc SINE MIR -98 170 103 9 1469 207 88 0 0 chr11 115869628 115869662 -5974194 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1469 497 199 26 15 chr11 115870864 115870990 -5972866 - PB1D9 SINE Alu -28 119 1 9 1469 205 344 101 8 chr11 115872179 115872308 -5971548 + MIRb SINE MIR 61 201 -67 9 1469 524 198 72 0 chr11 115872643 115872754 -5971102 - B1_Mur2 SINE Alu -6 143 25 9 1469 22 0 0 0 chr11 115873267 115873289 -5970567 + GC_rich Low_complexity Low_complexity 1 22 0 9 1469 599 222 67 0 chr11 115873385 115873520 -5970336 - B1F SINE Alu 0 149 6 9 1469 264 328 57 78 chr11 115873388 115873580 -5970276 - B4 SINE B4 -67 225 38 9 1469 359 214 214 0 chr11 115874896 115874994 -5968862 + PB1D7 SINE Alu 1 119 -1 9 1469 1473 59 27 0 chr11 115875043 115875230 -5968626 + B2_Mm1a SINE B2 1 192 -1 9 1469 207 139 0 0 chr11 115875257 115875293 -5968563 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1469 679 115 0 26 chr11 115875303 115875419 -5968437 + B1_Mus2 SINE Alu 1 113 -34 9 1469 240 35 0 0 chr11 115875420 115875449 -5968407 + (GAA)n Simple_repeat Simple_repeat 3 31 0 9 1469 537 58 0 0 chr11 115875473 115875542 -5968314 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 9 1469 265 240 17 193 chr11 115875550 115875669 -5968187 + B1_Mur1 SINE Alu 10 139 -10 9 1469 598 268 0 21 chr11 115875799 115875940 -5967916 + ID_B1 SINE B4 82 219 -5 9 1469 180 340 112 30 chr11 115876178 115876375 -5967481 + MIRb SINE MIR 55 267 -1 9 1469 21 0 0 0 chr11 115876581 115876602 -5967254 + AT_rich Low_complexity Low_complexity 1 21 0 9 1469 258 305 12 47 chr11 115876675 115876688 -5967168 + ID_B1 SINE B4 75 157 -67 9 1469 265 257 14 41 chr11 115876688 115876761 -5967095 + PB1D10 SINE Alu 6 76 -41 9 1469 513 207 50 83 chr11 115876762 115876883 -5966973 - B1_Mur1 SINE Alu -9 140 24 9 1469 378 256 63 92 chr11 115876883 115876904 -5966952 - B4 SINE B4 -75 217 80 9 1469 922 170 0 7 chr11 115876933 115877081 -5966775 - B1_Mus1 SINE Alu -1 147 1 9 1469 252 284 15 15 chr11 115877081 115877149 -5966707 - PB1D10 SINE Alu -42 75 8 9 1469 381 357 35 7 chr11 115877154 115877298 -5966558 + ORR1E LTR MaLR 10 157 -202 9 1469 1179 62 7 0 chr11 115877300 115877446 -5966410 + B1_Mus1 SINE Alu 2 148 0 9 1469 207 0 0 0 chr11 115877446 115877469 -5966387 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1469 325 220 17 180 chr11 115877469 115877484 -5966372 + MT2B LTR ERVL 155 257 -344 9 1469 484 162 169 8 chr11 115877484 115877602 -5966254 + B1_Mus2 SINE Alu 1 137 -10 9 1469 252 86 0 0 chr11 115877602 115877637 -5966219 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1469 325 220 17 180 chr11 115877637 115877675 -5966181 + MT2B LTR ERVL 258 298 -303 9 1469 320 246 0 14 chr11 115877681 115877751 -5966105 + B1_Mm SINE Alu 62 130 -17 9 1469 204 40 0 0 chr11 115878059 115878084 -5965772 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 9 1469 1424 68 6 0 chr11 115878085 115878262 -5965594 - B2_Mm1a SINE B2 -15 178 1 9 1469 879 118 0 0 chr11 115878272 115878407 -5965449 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 9 1469 1019 63 0 90 chr11 115878407 115878556 -5965300 - B1_Mus1 SINE Alu -11 137 2 9 1469 553 112 0 0 chr11 115878557 115878637 -5965219 + B2_Mm2 SINE B2 36 115 -80 9 1469 216 0 0 0 chr11 115878637 115878661 -5965195 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 9 1469 374 245 98 89 chr11 115878661 115878692 -5965164 + B3 SINE B2 127 148 -68 9 1469 286 91 127 0 chr11 115878712 115878767 -5965089 + B2_Mm1a SINE B2 127 188 -5 9 1469 1459 39 16 22 chr11 115878767 115878778 -5965078 - B2_Mm2 SINE B2 -14 181 174 9 1469 1079 90 14 0 chr11 115878778 115878923 -5964933 + B1_Mus1 SINE Alu 2 148 0 9 1469 1459 39 16 22 chr11 115878923 115879093 -5964763 - B2_Mm2 SINE B2 -22 173 1 9 1469 243 0 0 0 chr11 115879767 115879794 -5964062 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1469 856 170 7 39 chr11 115879795 115879948 -5963908 + B1_Mus1 SINE Alu 1 148 0 9 1469 242 223 0 87 chr11 115879960 115880063 -5963793 + A-rich Low_complexity Low_complexity 1 94 0 9 1469 252 0 0 0 chr11 115880071 115880099 -5963757 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1469 1023 82 7 40 chr11 115880099 115880251 -5963605 - B1_Mus1 SINE Alu 0 148 2 9 1469 1384 77 0 32 chr11 115880254 115880443 -5963413 - B2_Mm2 SINE B2 -9 186 4 9 1469 841 92 30 0 chr11 115880455 115880586 -5963270 - B2_Mm2 SINE B2 -10 185 51 9 1469 387 0 0 0 chr11 115881120 115881163 -5962693 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 9 1469 1180 70 0 0 chr11 115881163 115881319 -5962537 - B2_Mm2 SINE B2 -38 157 2 9 1469 821 65 73 8 chr11 115881717 115881840 -5962016 + B2_Mm2 SINE B2 2 132 -63 9 1469 721 88 8 73 chr11 115881885 115881975 -5961881 + B2_Mm2 SINE B2 27 116 -79 9 1469 1325 91 43 0 chr11 115881975 115882162 -5961694 - B2_Mm2 SINE B2 0 195 1 9 1469 721 88 8 73 chr11 115882162 115882194 -5961662 + B2_Mm2 SINE B2 117 141 -54 9 1469 216 0 0 0 chr11 115882308 115882332 -5961524 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 9 1469 966 59 7 29 chr11 115882334 115882473 -5961383 - B1_Mus1 SINE Alu -6 142 7 9 1469 207 69 0 0 chr11 115882564 115882593 -5961263 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1469 322 217 105 32 chr11 115883202 115883297 -5960559 + B1_Mur4 SINE Alu 48 149 -1 9 1469 23 54 0 0 chr11 115886252 115886289 -5957567 + AT_rich Low_complexity Low_complexity 1 37 0 9 1469 228 259 0 141 chr11 115886479 115886578 -5957278 + MT2B LTR ERVL 155 239 -362 9 1469 565 242 0 52 chr11 115886500 115886635 -5957221 + B1_Mur1 SINE Alu 9 136 -13 9 1469 349 276 133 39 chr11 115886622 115886803 -5957053 + ID_B1 SINE B4 27 224 0 9 1469 287 220 58 125 chr11 115886823 115886927 -5956929 + PB1D9 SINE Alu 22 118 -2 9 1469 665 182 77 42 chr11 115887006 115887149 -5956707 + B1_Mur2 SINE Alu 2 149 0 9 1469 1693 21 5 0 chr11 115887150 115887342 -5956514 + B2_Mm1a SINE B2 1 193 0 9 1469 678 206 106 0 chr11 115887566 115887707 -5956149 - B3 SINE B2 -57 159 4 9 1469 486 147 7 10 chr11 115887715 115887822 -5956034 + B1_Mur3 SINE Alu 28 134 -15 9 1469 237 154 0 41 chr11 115887938 115887998 -5955858 - B1F2 SINE Alu -43 74 17 9 1469 521 259 37 7 chr11 115888027 115888163 -5955693 - B1F SINE Alu -9 140 1 9 1469 363 96 0 0 chr11 115888258 115888310 -5955546 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 9 1469 195 129 0 0 chr11 115888353 115888384 -5955472 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 9 1469 189 0 0 0 chr11 115888401 115888422 -5955434 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 9 1469 887 61 0 0 chr11 115888422 115888537 -5955319 - B1_Mm SINE Alu -12 135 21 9 1469 743 59 10 0 chr11 115888542 115888643 -5955213 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 9 1469 357 235 40 30 chr11 115888767 115888868 -5954988 - PB1D10 SINE Alu 0 117 16 9 1469 277 326 0 0 chr11 115889266 115889352 -5954504 + MIR SINE MIR 59 144 -118 9 1469 521 99 0 12 chr11 115889505 115889587 -5954269 + (TTTTC)n Simple_repeat Simple_repeat 4 84 0 9 1469 817 73 81 0 chr11 115889587 115889710 -5954146 - B1_Mus1 SINE Alu 0 148 16 9 1469 198 118 0 0 chr11 115889735 115889769 -5954087 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1469 342 292 169 23 chr11 115889874 115890046 -5953810 - ID_B1 SINE B4 -26 198 2 9 1469 732 233 0 7 chr11 115890130 115890277 -5953579 + B1_Mur1 SINE Alu 3 148 -1 9 1469 23 0 0 0 chr11 115890371 115890394 -5953462 + AT_rich Low_complexity Low_complexity 1 23 0 9 1469 284 250 21 42 chr11 115890397 115890493 -5953363 - RSINE1 SINE B4 -61 104 11 9 1469 378 275 82 22 chr11 115890515 115890649 -5953207 - B1F2 SINE Alu 0 149 8 9 1469 301 246 0 28 chr11 115890647 115890718 -5953138 - PB1D10 SINE Alu -3 114 46 9 1469 394 279 23 69 chr11 115893004 115893135 -5950721 - RSINE1 SINE B4 0 165 41 9 1469 261 292 62 0 chr11 115893271 115893367 -5950489 - B1F SINE Alu -7 142 41 9 1469 234 91 0 0 chr11 115893367 115893400 -5950456 + (TTTCC)n Simple_repeat Simple_repeat 3 35 0 9 1469 1059 110 0 0 chr11 115893400 115893545 -5950311 - B1_Mm SINE Alu 0 147 3 9 1469 923 113 140 18 chr11 115893546 115893717 -5950139 - B2_Mm2 SINE B2 -3 192 1 1 1469 228 277 0 0 chr11 115893719 115893766 -5950090 - PB1 SINE Alu -75 52 6 9 1469 397 296 89 129 chr11 115893864 115893953 -5949903 - B4A SINE B4 0 292 216 1 1469 792 189 207 0 chr11 115893953 115894122 -5949734 + B3 SINE B2 1 204 -12 1 1469 397 296 89 129 chr11 115894122 115894280 -5949576 - B4A SINE B4 -77 215 55 1 1469 269 264 32 13 chr11 115894311 115894408 -5949448 - B1F1 SINE Alu 0 149 49 1 1469 522 208 183 0 chr11 115894580 115894700 -5949156 - B1_Mus1 SINE Alu -6 142 1 1 1469 905 229 49 15 chr11 115894720 115894924 -5948932 - B3 SINE B2 -4 212 2 1 1469 1137 83 7 0 chr11 115895198 115895343 -5948513 - B1_Mus1 SINE Alu 0 148 3 1 1469 1385 51 40 11 chr11 115895343 115895520 -5948336 - B2_Mm2 SINE B2 -12 183 2 1 1469 180 0 0 0 chr11 115895533 115895553 -5948303 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1469 1102 67 0 0 chr11 115895553 115895688 -5948168 - B1_Mus1 SINE Alu -11 137 3 1 1469 643 91 101 0 chr11 115895688 115895787 -5948069 + B1_Mus1 SINE Alu 14 122 -26 1 1469 189 0 0 0 chr11 115895832 115895853 -5948003 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1469 654 174 349 0 chr11 115896134 115896283 -5947573 - B3 SINE B2 -15 201 1 1 1469 305 322 0 32 chr11 115896437 115896530 -5947326 - ID_B1 SINE B4 -38 186 97 1 1469 1485 53 21 5 chr11 115896631 115896819 -5947037 - B2_Mm1a SINE B2 -1 192 2 1 1469 1416 108 0 5 chr11 115896834 115897029 -5946827 - B2_Mm2 SINE B2 -1 194 1 1 1469 1280 110 0 91 chr11 115897234 115897444 -5946412 + B2_Mm2 SINE B2 2 192 -3 1 1469 804 178 37 0 chr11 115897574 115897709 -5946147 + B1_Mus1 SINE Alu 2 141 -7 1 1469 756 228 141 27 chr11 115897735 115897920 -5945936 + B3 SINE B2 3 208 -8 1 1469 408 286 65 32 chr11 115897945 115898068 -5945788 + B1F SINE Alu 1 127 -22 1 1469 203 200 0 0 chr11 115898138 115898173 -5945683 + A-rich Low_complexity Low_complexity 1 35 0 1 1469 506 143 102 28 chr11 115898188 115898296 -5945560 + PB1D9 SINE Alu 5 120 0 1 1469 247 292 138 28 chr11 115898320 115898429 -5945427 + RSINE1 SINE B4 3 123 -42 1 1469 302 0 26 0 chr11 115898476 115898514 -5945342 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1469 1214 43 0 0 chr11 115898516 115898656 -5945200 - B1_Mus2 SINE Alu -6 141 2 1 1469 536 179 0 111 chr11 115900476 115900602 -5943254 - PB1D9 SINE Alu -7 113 2 1 1469 1268 14 0 26 chr11 115900741 115900892 -5942964 + B1_Mm SINE Alu 1 147 0 1 1469 192 40 0 0 chr11 115900895 115900920 -5942936 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1469 1717 26 0 0 chr11 115901133 115901325 -5942531 - B2_Mm1a SINE B2 -1 192 1 1 1469 676 260 102 0 chr11 115901517 115901713 -5942143 - ID_B1 SINE B4 -7 217 2 1 1469 295 53 0 0 chr11 115902897 115902935 -5940921 - U2 snRNA snRNA -150 38 1 1 1469 345 47 0 0 chr11 115902941 115902984 -5940872 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 1469 215 62 0 0 chr11 115903022 115903054 -5940802 - B2_Mm2 SINE B2 -100 95 64 1 1469 1368 85 11 0 chr11 115903074 115903251 -5940605 - B2_Mm1t SINE B2 -13 180 2 1 1469 750 256 20 5 chr11 115903263 115903476 -5940380 - B3A SINE B2 -1 215 2 1 1469 429 218 82 0 chr11 115903723 115903833 -5940023 - B1F1 SINE Alu -1 119 1 1 1469 273 263 9 100 chr11 115903746 115903856 -5940000 - B4A SINE B4 -121 171 72 1 1469 657 238 0 6 chr11 115904107 115904245 -5939611 - B1_Mur1 SINE Alu -5 144 13 1 1469 1168 68 0 0 chr11 115904555 115904701 -5939155 + B1_Mus1 SINE Alu 3 148 0 1 1469 876 186 180 0 chr11 115904739 115904922 -5938934 - B3 SINE B2 0 216 1 1 1469 672 149 0 0 chr11 115904936 115905077 -5938779 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 1469 974 236 20 15 chr11 115905077 115905279 -5938577 - B3 SINE B2 -13 203 1 1 1469 1202 61 7 0 chr11 115905306 115905453 -5938403 - B1_Mus1 SINE Alu 0 148 1 1 1469 180 0 0 0 chr11 115905458 115905478 -5938378 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1469 356 305 50 38 chr11 115905492 115905652 -5938204 - RSINE1 SINE B4 0 165 4 1 1469 868 298 70 0 chr11 115906064 115906306 -5937550 + B4A SINE B4 27 285 -7 1 1469 341 200 0 0 chr11 115906650 115906715 -5937141 + ID4_ SINE ID 5 69 -14 1 1469 669 229 27 14 chr11 115907276 115907422 -5936434 - B1_Mur1 SINE Alu 0 149 2 1 1469 313 274 128 0 chr11 115907430 115907532 -5936324 - PB1D9 SINE Alu 0 120 6 1 1469 1189 61 0 13 chr11 115907544 115907694 -5936162 - B1_Mus1 SINE Alu 0 148 1 1 1469 1086 89 7 14 chr11 115907755 115907903 -5935953 - B1_Mus1 SINE Alu 0 148 2 1 1469 253 342 101 0 chr11 115907955 115908034 -5935822 + PB1 SINE Alu 13 99 -28 1 1469 254 263 25 50 chr11 115908453 115908533 -5935323 + RSINE1 SINE B4 47 124 -41 1 1469 186 71 0 0 chr11 115909531 115909559 -5934297 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 1469 823 203 0 13 chr11 115909600 115909750 -5934106 - B1_Mur2 SINE Alu -1 148 1 1 1469 503 177 338 0 chr11 115910898 115911055 -5932801 - B3A SINE B2 -6 210 1 1 1469 342 0 0 0 chr11 115911150 115911188 -5932668 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1469 291 356 17 0 chr11 115912527 115912642 -5931214 + PB1D10 SINE Alu 1 117 0 1 1469 186 43 0 0 chr11 115913133 115913156 -5930700 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1469 225 260 48 97 chr11 115913165 115913213 -5930643 - YREP_Mm Unknown Unknown -1453 359 319 1 1469 632 215 65 29 chr11 115913213 115913338 -5930518 + B1_Mm SINE Alu 1 134 -13 1 1469 189 0 0 0 chr11 115913338 115913359 -5930497 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 1 1469 632 215 65 29 chr11 115913359 115913372 -5930484 + B1_Mm SINE Alu 135 144 -3 1 1469 1182 61 0 7 chr11 115913407 115913555 -5930301 - B1_Mus2 SINE Alu 0 147 1 1 1469 25 0 0 0 chr11 115913563 115913588 -5930268 + AT_rich Low_complexity Low_complexity 1 25 0 1 1469 764 64 92 0 chr11 115913605 115913714 -5930142 - B2_Mm2 SINE B2 -69 126 8 1 1469 299 364 27 0 chr11 115914080 115914190 -5929666 + MIR SINE MIR 50 162 -100 1 1469 255 125 0 0 chr11 115915506 115915546 -5928310 + (GGA)n Simple_repeat Simple_repeat 2 41 0 1 1469 225 225 0 0 chr11 115916536 115916576 -5927280 + BC1_Mm scRNA scRNA 46 85 -67 1 1469 462 254 18 0 chr11 115916823 115916937 -5926919 - PB1D10 SINE Alu -1 116 1 1 1469 794 103 35 0 chr11 115917073 115917189 -5926667 + PB1D9 SINE Alu 1 120 0 1 1469 213 39 0 0 chr11 115918049 115918075 -5925781 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1469 327 104 0 0 chr11 115921349 115921397 -5922459 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 1469 201 274 107 0 chr11 115924263 115924347 -5919509 + MIR SINE MIR 48 140 -122 1 1469 346 241 98 36 chr11 115924523 115924635 -5919221 - PB1D9 SINE Alu 0 120 2 1 1469 25 0 0 0 chr11 115926383 115926408 -5917448 + AT_rich Low_complexity Low_complexity 1 25 0 1 1469 195 42 0 0 chr11 115927183 115927207 -5916649 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1469 1289 40 0 0 chr11 115927497 115927645 -5916211 + B1_Mus1 SINE Alu 1 148 0 1 1469 211 325 35 24 chr11 115927796 115927881 -5915975 + L3 LINE CR1 4278 4363 -126 1 1469 468 0 0 0 chr11 115928085 115928137 -5915719 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1469 209 384 65 75 chr11 115928258 115928768 -5915088 + L2a LINE L2 2919 3423 -3 1 1469 189 0 0 0 chr11 115929947 115929968 -5913888 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 1 1469 967 169 0 13 chr11 115931986 115932136 -5911720 - B1_Mur3 SINE Alu -1 148 1 1 1469 1233 21 28 0 chr11 115932164 115932306 -5911550 + B1_Mus1 SINE Alu 2 147 -1 1 1469 1469 77 0 0 chr11 115932324 115932505 -5911351 - B2_Mm2 SINE B2 -14 181 1 1 1469 1584 56 0 5 chr11 115932520 115932716 -5911140 - B2_Mm2 SINE B2 0 195 1 1 1469 760 228 0 13 chr11 115932758 115932909 -5910947 + B1_Mur1 SINE Alu 1 149 0 1 1469 599 246 40 76 chr11 115932993 115933191 -5910665 + B2_Mm2 SINE B2 1 191 -4 1 1469 235 267 100 0 chr11 115933237 115933297 -5910559 - B4A SINE B4 0 292 227 1 1469 364 341 0 23 chr11 115933348 115933477 -5910379 - B4 SINE B4 -165 127 2 1 1469 522 202 0 10 chr11 115933477 115933568 -5910288 - ID_B1 SINE B4 -51 173 84 1 1469 1231 54 0 0 chr11 115933790 115933937 -5909919 - B1_Mus1 SINE Alu -1 147 1 1 1469 314 228 159 45 chr11 115934222 115934324 -5909532 - B1F SINE Alu 0 117 6 1 1469 626 125 9 18 chr11 115936040 115936154 -5907702 - B1_Mus2 SINE Alu 0 147 35 1 1469 681 225 0 21 chr11 115936190 115936335 -5907521 - B1_Mur1 SINE Alu 0 149 8 1 1469 462 266 18 0 chr11 115936447 115936556 -5907300 - PB1D10 SINE Alu -1 116 6 1 1469 216 0 0 0 chr11 115936702 115936726 -5907130 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1469 1641 37 0 20 chr11 115936727 115936922 -5906934 - B2_Mm1t SINE B2 -2 191 1 1 1469 189 0 0 0 chr11 115941806 115941827 -5902029 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 1 1469 257 171 0 67 chr11 115942185 115942260 -5901596 + G-rich Low_complexity Low_complexity 2 71 0 1 1469 1453 80 16 0 chr11 115943317 115943504 -5900352 + B2_Mm2 SINE B2 1 190 -5 1 1469 279 133 0 0 chr11 115944196 115944241 -5899615 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1469 1280 34 0 0 chr11 115944241 115944388 -5899468 - B1_Mus2 SINE Alu 0 147 1 1 1469 356 182 182 0 chr11 115944423 115944500 -5899356 - RSINE1 SINE B4 -2 163 73 1 1469 246 268 48 24 chr11 115945541 115945625 -5898231 - PB1D7 SINE Alu -4 116 31 1 1469 766 162 42 14 chr11 115945735 115945879 -5897977 + B1_Mur4 SINE Alu 2 149 -1 1 1469 240 35 0 0 chr11 115945940 115945969 -5897887 + (TATG)n Simple_repeat Simple_repeat 3 31 0 1 1469 658 222 0 16 chr11 115945989 115946117 -5897739 - B3 SINE B2 -90 126 1 1 1469 1120 107 0 0 chr11 115946253 115946402 -5897454 - B1_Mur4 SINE Alu 0 150 2 1 1469 513 246 6 76 chr11 115946633 115946649 -5897207 + ID_B1 SINE B4 77 223 -1 1 1469 784 139 14 35 chr11 115946649 115946791 -5897065 + B1_Mur4 SINE Alu 11 149 -1 1 1469 391 267 0 11 chr11 115946834 115946925 -5896931 + PB1D7 SINE Alu 24 113 -7 1 1469 383 329 127 14 chr11 115947631 115947844 -5896012 + MIR SINE MIR 13 249 -13 1 1469 236 330 0 0 chr11 115947981 115948075 -5895781 + C-rich Low_complexity Low_complexity 1 94 0 1 1469 357 24 0 0 chr11 115949422 115949464 -5894392 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1469 334 325 8 49 chr11 115949528 115949651 -5894205 - ID_B1 SINE B4 -104 120 3 1 1469 210 97 0 0 chr11 115949847 115949878 -5893978 + B1_Mur4 SINE Alu 11 41 -109 1 1469 315 270 21 73 chr11 115949866 115949962 -5893894 + B3A SINE B2 66 156 -42 1 1469 480 35 0 0 chr11 115949964 115950022 -5893834 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1469 1071 145 53 19 chr11 115950413 115950448 -5893408 - B2_Mm2 SINE B2 -1 192 159 1 1469 180 0 0 0 chr11 115950448 115950468 -5893388 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1469 1071 75 50 12 chr11 115950468 115950617 -5893239 - B2_Mm2 SINE B2 -37 158 2 1 1469 213 119 0 0 chr11 115950622 115950664 -5893192 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1469 1229 41 0 7 chr11 115950666 115950814 -5893042 - B1_Mus2 SINE Alu 0 147 1 1 1469 291 54 0 0 chr11 115950853 115950890 -5892966 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 1 1469 920 128 0 63 chr11 115950913 115951071 -5892785 - B1_Mur3 SINE Alu 0 149 2 1 1469 613 183 0 0 chr11 115951098 115951202 -5892654 - B1_Mur1 SINE Alu 0 149 46 1 1469 1510 62 5 20 chr11 115951678 115951874 -5891982 - B2_Mm1a SINE B2 0 193 1 1 1469 2758 205 88 104 chr11 115952194 115952325 -5891531 - RMER1B Other Other 0 1066 932 1 1469 3011 36 19 6 chr11 115952325 115952691 -5891165 + L1Md_F3 LINE L1 6214 6584 0 1 1469 2758 205 88 104 chr11 115952691 115953559 -5890297 - RMER1B Other Other -135 931 83 1 1469 1002 141 0 7 chr11 115953674 115953824 -5890032 + B1_Mur4 SINE Alu 1 149 -1 1 1469 1049 67 35 12 chr11 115953866 115954283 -5889573 + (TATG)n Simple_repeat Simple_repeat 1 426 0 1 1469 778 200 119 0 chr11 115954323 115954483 -5889373 + B3 SINE B2 37 215 -1 1 1469 1563 37 0 40 chr11 115954488 115954687 -5889169 + B2_Mm1a SINE B2 2 192 -1 1 1469 440 271 120 29 chr11 115954690 115954865 -5888991 - B3A SINE B2 -6 192 2 1 1469 240 280 12 62 chr11 115954912 115954992 -5888864 + PB1D10 SINE Alu 33 108 -9 1 1469 310 222 16 0 chr11 115955104 115955167 -5888689 - Arthur1B DNA Tip100 -1 1224 1161 1 1469 232 312 93 8 chr11 115955192 115955321 -5888535 - Arthur1B DNA Tip100 -992 233 94 1 1469 501 248 0 0 chr11 115955534 115955643 -5888213 - PB1 SINE Alu -18 109 1 1 1469 1059 82 125 71 chr11 115955705 115955889 -5887967 + B2_Mm2 SINE B2 2 195 0 1 1469 242 322 56 33 chr11 115955964 115956054 -5887802 - RSINE1 SINE B4 -3 162 71 1 1469 180 0 0 0 chr11 115956115 115956135 -5887721 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1469 261 0 0 0 chr11 115956135 115956163 -5887693 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1469 534 141 8 36 chr11 115956167 115956297 -5887559 - B1_Mm SINE Alu 0 149 25 1 1469 477 168 18 32 chr11 115956345 115956505 -5887351 - B1_Mur4 SINE Alu -7 143 18 1 1469 277 311 59 94 chr11 115956537 115956563 -5887293 - B2_Mm2 SINE B2 0 195 171 1 1469 1504 63 5 25 chr11 115956563 115956759 -5887097 - B2_Mm1a SINE B2 0 193 2 1 1469 618 256 56 19 chr11 115956759 115956934 -5886922 - B3A SINE B2 -25 170 1 1 1469 456 49 0 0 chr11 115957220 115957263 -5886593 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1469 1175 55 14 0 chr11 115957263 115957409 -5886447 - B1_Mus1 SINE Alu 0 148 1 1 1469 456 49 0 0 chr11 115957409 115957426 -5886430 + (T)n Simple_repeat Simple_repeat 1 17 0 1 1469 1518 62 10 5 chr11 115957427 115957621 -5886235 - B2_Mm2 SINE B2 0 195 1 1 1469 943 164 30 60 chr11 115957624 115957825 -5886031 - B2_Mm2 SINE B2 0 195 1 1 1469 26 0 0 0 chr11 115957852 115957878 -5885978 + AT_rich Low_complexity Low_complexity 1 26 0 1 1469 296 254 28 0 chr11 115958022 115958093 -5885763 + PB1D10 SINE Alu 21 93 -24 1 1469 895 192 128 0 chr11 115958142 115958329 -5885527 + B3 SINE B2 1 211 -5 1 1469 354 217 81 45 chr11 115958341 115958452 -5885404 + PB1 SINE Alu 10 124 -3 1 1469 1076 38 15 0 chr11 115958497 115958628 -5885228 + B1_Mm SINE Alu 2 134 -13 1 1469 252 0 0 0 chr11 115958628 115958656 -5885200 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1469 637 262 0 66 chr11 115958823 115958974 -5884882 - ID_B1 SINE B4 -1 223 83 1 1469 27 49 0 0 chr11 115959004 115959045 -5884811 + AT_rich Low_complexity Low_complexity 1 41 0 1 1469 273 200 0 18 chr11 115959067 115959123 -5884733 - B2_Mm2 SINE B2 -94 101 47 1 1469 1347 91 28 0 chr11 115959155 115959331 -5884525 - B2_Mm2 SINE B2 -14 181 1 1 1469 180 0 0 0 chr11 115959480 115959500 -5884356 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1469 1101 70 21 0 chr11 115959500 115959642 -5884214 - B1_Mus1 SINE Alu -2 146 2 1 1469 894 188 194 22 chr11 115959651 115959831 -5884025 - B3 SINE B2 -2 214 4 1 1469 348 221 11 34 chr11 115960210 115960299 -5883557 + B1_Mus1 SINE Alu 1 87 -61 1 1469 590 222 41 7 chr11 115960957 115961057 -5882799 - MTE2b LTR MaLR -2 377 268 1 1469 449 193 12 20 chr11 115961057 115961170 -5882686 + B3A SINE B2 2 108 -85 1 1469 423 302 41 41 chr11 115961174 115961355 -5882501 - MTE2a LTR MaLR -45 334 154 1 1469 207 267 0 0 chr11 115961490 115961535 -5882321 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1469 250 281 0 0 chr11 115961535 115961592 -5882264 - RSINE1 SINE B4 0 165 109 1 1469 393 102 0 0 chr11 115962115 115962174 -5881682 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1469 760 268 56 66 chr11 115962215 115962503 -5881353 - B4A SINE B4 -6 286 2 1 1469 729 112 0 0 chr11 115962608 115962715 -5881141 - B1_Mus2 SINE Alu -6 141 35 1 1469 1205 189 14 5 chr11 115962739 115962952 -5880904 - B3 SINE B2 0 216 2 1 1469 493 296 0 22 chr11 115963933 115964068 -5879788 + B1F SINE Alu 8 139 -10 1 1469 1309 20 0 0 chr11 115964140 115964287 -5879569 - B1_Mus2 SINE Alu 0 147 1 1 1469 200 246 16 16 chr11 115964566 115964628 -5879228 + (CATA)n Simple_repeat Simple_repeat 1 62 0 1 1469 520 284 60 13 chr11 115964861 115965011 -5878845 - RSINE1 SINE B4 -6 159 3 1 1469 225 0 0 0 chr11 115965908 115965933 -5877923 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1469 199 93 47 0 chr11 115966207 115966250 -5877606 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 1469 351 0 0 0 chr11 115966251 115966290 -5877566 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1469 312 254 31 137 chr11 115966322 115966553 -5877303 - B4A SINE B4 -94 198 2 1 1469 477 274 0 132 chr11 115966596 115966674 -5877182 - RSINE1 SINE B4 0 165 104 1 1469 587 14 14 0 chr11 115966674 115966746 -5877110 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1469 1040 100 0 7 chr11 115966753 115966894 -5876962 - B1_Mus2 SINE Alu -6 141 2 1 1469 477 274 0 132 chr11 115966894 115966996 -5876860 - RSINE1 SINE B4 -62 103 2 1 1469 318 227 30 0 chr11 115967062 115967128 -5876728 - MIRm SINE MIR 0 276 209 1 1469 459 0 0 0 chr11 115970461 115970512 -5873344 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1469 472 206 0 0 chr11 115972241 115972333 -5871523 - PB1D10 SINE Alu -10 107 16 1 1469 311 339 0 82 chr11 115972342 115972464 -5871392 - PB1D10 SINE Alu -3 114 3 1 1469 783 108 280 28 chr11 115972525 115972668 -5871188 - B2_Mm2 SINE B2 -16 179 1 1 1469 231 36 0 0 chr11 115972668 115972696 -5871160 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1 1469 669 284 40 0 chr11 115973178 115973379 -5870477 + B3 SINE B2 1 209 -7 1 1469 768 174 50 14 chr11 115973463 115973603 -5870253 + B1_Mur4 SINE Alu 5 149 -1 1 1469 565 254 1 37 chr11 115973623 115973793 -5870063 - B3 SINE B2 -36 162 1 1 1469 1532 67 0 15 chr11 115973880 115974076 -5869780 - B2_Mm1a SINE B2 0 193 1 1 1469 693 253 69 34 chr11 115974103 115974315 -5869541 + B3A SINE B2 1 215 -1 1 1469 489 299 24 12 chr11 115974327 115974496 -5869360 - MLT1C LTR MaLR -283 184 14 1 1469 417 70 0 0 chr11 115974831 115974888 -5868968 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1469 229 44 0 82 chr11 115974909 115974958 -5868898 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 1 1469 393 195 25 25 chr11 115974958 115975037 -5868819 - ID4_ SINE ID 0 83 5 1 1469 1194 187 204 46 chr11 115975037 115975145 -5868711 + MTD LTR MaLR 3 106 -313 1 1469 219 36 0 0 chr11 115975145 115975173 -5868683 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1469 1141 82 0 0 chr11 115975173 115975319 -5868537 - B1_Mus1 SINE Alu -2 146 1 1 1469 1194 187 204 46 chr11 115975319 115975557 -5868299 + MTD LTR MaLR 107 404 -15 1 1469 414 316 105 0 chr11 115975582 115975734 -5868122 + B4A SINE B4 57 224 -68 1 1469 719 243 61 41 chr11 115975734 115975931 -5867925 + B3 SINE B2 3 203 -13 1 1469 225 0 0 0 chr11 115976017 115976042 -5867814 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1469 245 323 93 16 chr11 115976084 115976098 -5867758 - YREP_Mm Unknown Unknown -1512 300 167 1 1469 421 259 55 18 chr11 115976098 115976208 -5867648 + ID_B1 SINE B4 111 224 0 1 1469 1097 108 0 0 chr11 115976221 115976369 -5867487 + B1_Mus1 SINE Alu 1 148 0 1 1469 417 306 28 0 chr11 115976382 115976490 -5867366 + PB1D10 SINE Alu 2 112 -5 1 1469 21 57 0 0 chr11 115976494 115976529 -5867327 + AT_rich Low_complexity Low_complexity 1 35 0 1 1469 1425 66 38 0 chr11 115976531 115976714 -5867142 + B2_Mm2 SINE B2 1 190 -5 1 1469 1643 36 0 15 chr11 115976717 115976912 -5866944 + B2_Mm1a SINE B2 2 193 0 1 1469 500 278 74 0 chr11 115976920 115977082 -5866774 - MER20 DNA MER1_type -44 175 2 1 1469 1116 44 66 0 chr11 115977544 115977681 -5866175 + B1_Mus1 SINE Alu 2 147 -1 1 1469 504 0 0 0 chr11 115977681 115977737 -5866119 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1 1469 1247 85 22 28 chr11 115977737 115977907 -5865949 - B2_Mm2 SINE B2 -23 172 2 1 1469 1002 219 19 23 chr11 115977913 115978128 -5865728 - B3 SINE B2 0 216 3 1 1469 519 301 49 11 chr11 115978165 115978350 -5865506 - B3A SINE B2 -4 194 3 1 1469 346 231 89 36 chr11 115978409 115978521 -5865335 - B3A SINE B2 -11 187 70 1 1469 291 316 0 25 chr11 115979098 115979179 -5864677 - RSINE1 SINE B4 -84 81 3 1 1469 1231 174 10 5 chr11 115979214 115979422 -5864434 + B3 SINE B2 1 209 -7 1 1469 345 181 10 21 chr11 115979427 115979523 -5864333 + CT-rich Low_complexity Low_complexity 3 97 0 1 1469 229 297 13 13 chr11 115979535 115979610 -5864246 + B4A SINE B4 4 78 -214 1 1469 400 285 99 7 chr11 115979875 115980027 -5863829 + MTD LTR MaLR 46 211 -208 1 1469 492 62 0 0 chr11 115980049 115980113 -5863743 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1469 942 162 200 6 chr11 115980117 115980297 -5863559 - B3 SINE B2 0 216 2 1 1469 730 161 97 0 chr11 115980297 115980421 -5863435 - B1_Mur4 SINE Alu -10 140 5 1 1469 1158 82 0 0 chr11 115980440 115980586 -5863270 + B1_Mus2 SINE Alu 2 147 0 1 1469 270 337 158 45 chr11 115980636 115980648 -5863208 + MTD LTR MaLR 172 183 -213 1 1469 351 0 0 0 chr11 115980648 115980687 -5863169 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 1469 500 277 50 33 chr11 115980687 115980867 -5862989 + MTD LTR MaLR 184 405 -14 1 1469 369 43 0 0 chr11 115981064 115981111 -5862745 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1469 341 354 26 0 chr11 115981138 115981251 -5862605 - ID_B1 SINE B4 -31 193 78 1 1469 62 0 0 14 chr11 115981251 115981303 -5862553 + AT_rich Low_complexity Low_complexity 1 52 0 1 1469 1256 54 0 0 chr11 115981303 115981451 -5862405 - B1_Mus1 SINE Alu 0 148 1 1 1469 62 0 0 14 chr11 115981451 115981471 -5862385 + AT_rich Low_complexity Low_complexity 1 20 0 1 1469 189 26 79 0 chr11 115981735 115981773 -5862083 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1469 282 93 0 0 chr11 115981773 115981823 -5862033 - B1_Mus2 SINE Alu -9 138 62 1 1469 1101 85 0 0 chr11 115982697 115982850 -5861006 + B2_Mm2 SINE B2 1 153 -42 1 1469 372 59 0 0 chr11 115982850 115982901 -5860955 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1469 282 239 0 0 chr11 115982900 115982971 -5860885 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1469 267 152 0 0 chr11 115983037 115983083 -5860773 + T-rich Low_complexity Low_complexity 1 46 0 1 1469 923 90 13 46 chr11 115983083 115983116 -5860740 - B1_Mus2 SINE Alu 0 147 121 1 1469 2968 118 5 31 chr11 115983116 115983561 -5860295 - RLTR10C LTR ERVK -3 433 1 1 1469 923 90 13 46 chr11 115983561 115983679 -5860177 - B1_Mus2 SINE Alu -27 120 1 1 1469 1269 88 77 6 chr11 115983681 115983863 -5859993 - B2_Mm2 SINE B2 0 195 1 1 1469 713 222 15 0 chr11 115984064 115984199 -5859657 + B1_Mur1 SINE Alu 3 139 -10 1 1469 386 302 10 0 chr11 115984330 115984426 -5859430 - PB1 SINE Alu -10 117 21 1 1469 568 184 10 0 chr11 115984458 115984561 -5859295 - B1_Mur1 SINE Alu 0 149 46 1 1469 585 299 60 54 chr11 115984561 115984897 -5858959 + RLTR11A2 LTR ERVK 1 338 -189 1 1469 763 178 0 0 chr11 115984926 115985055 -5858801 - B1_Mur4 SINE Alu -21 129 1 1 1469 573 205 28 64 chr11 115985554 115985695 -5858161 + B1F SINE Alu 4 139 -10 1 1469 257 250 101 92 chr11 115985716 115985835 -5858021 + B1F SINE Alu 17 136 -13 1 1469 240 275 65 11 chr11 115985867 115985916 -5857940 + B3 SINE B2 120 173 -43 1 1469 405 0 0 0 chr11 115985916 115985961 -5857895 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1469 240 275 65 11 chr11 115985961 115986003 -5857853 + B3 SINE B2 174 216 0 1 1469 363 198 93 0 chr11 115986109 115986195 -5857661 + B1_Mur1 SINE Alu 56 149 0 1 1469 640 210 8 0 chr11 115986236 115986355 -5857501 + RSINE1 SINE B4 29 148 -17 1 1469 198 0 0 0 chr11 115986644 115986666 -5857190 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1469 1254 169 158 7 chr11 115986812 115986911 -5856945 + ORR1C2 LTR MaLR 49 167 -217 1 1469 321 68 0 0 chr11 115986911 115986955 -5856901 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1469 1254 169 158 7 chr11 115986955 115987147 -5856709 + ORR1C2 LTR MaLR 168 383 -1 1 1469 302 276 116 66 chr11 115988015 115988213 -5855643 - MIRb SINE MIR -13 255 48 1 1469 834 190 0 0 chr11 115990200 115990342 -5853514 - B1_Mur1 SINE Alu -2 147 6 1 1469 251 308 129 27 chr11 115990425 115990572 -5853284 - B4 SINE B4 -12 280 119 1 1469 950 34 0 0 chr11 115992581 115992700 -5851156 - B1_Mus2 SINE Alu -8 139 21 1 1469 284 75 0 0 chr11 115992698 115992738 -5851118 + ORR1A3 LTR MaLR 279 318 -8 1 1469 816 85 17 8 chr11 115993533 115993652 -5850204 - PB1D9 SINE Alu 0 120 1 1 1469 437 199 315 37 chr11 115994402 115994564 -5849292 + B3 SINE B2 2 208 -8 1 1469 836 161 0 57 chr11 115994564 115994722 -5849134 - B1_Mur4 SINE Alu -1 149 1 1 1469 24 32 0 0 chr11 115994723 115994754 -5849102 + AT_rich Low_complexity Low_complexity 1 31 0 1 1469 216 0 0 0 chr11 115995233 115995257 -5848599 + (CACG)n Simple_repeat Simple_repeat 4 27 0 1 1469 23 0 0 0 chr11 115995355 115995378 -5848478 + AT_rich Low_complexity Low_complexity 1 23 0 1 1469 751 69 0 0 chr11 115996806 115996908 -5846948 - B1_Mus1 SINE Alu -30 118 17 1 1469 326 275 124 26 chr11 115996901 115996916 -5846940 - B4A SINE B4 -1 291 277 1 1469 1453 76 5 0 chr11 115996916 115997101 -5846755 + B2_Mm2 SINE B2 1 186 -9 1 1469 326 275 124 26 chr11 115997101 115997238 -5846618 - B4A SINE B4 -16 276 124 1 1469 903 232 199 41 chr11 115997239 115997675 -5846181 + RMER13A LTR ERVK 1 505 -355 1 1469 282 317 29 109 chr11 115997841 115997979 -5845877 - B4A SINE B4 -165 127 1 1 1469 2121 158 148 26 chr11 115998247 115998714 -5845142 + RLTR11A2 LTR ERVK 1 524 -3 1 183 915 156 21 0 chr11 115998714 115998855 -5845001 + B1_Mus1 SINE Alu 3 146 -2 1 1470 188 61 61 0 chr11 115998856 115998889 -5844967 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1 1470 534 42 0 0 chr11 115998955 115999027 -5844829 - B1_Mm SINE Alu 0 147 76 1 1470 481 181 9 62 chr11 115999092 115999204 -5844652 + B1_Mus1 SINE Alu 11 116 -32 1 1470 434 220 82 22 chr11 115999194 115999329 -5844527 + ID_B1 SINE B4 82 224 0 1 1470 274 263 0 0 chr11 115999349 115999425 -5844431 + T-rich Low_complexity Low_complexity 1 76 0 1 1470 689 215 15 0 chr11 115999470 115999605 -5844251 - B1_Mur4 SINE Alu -13 137 1 1 1470 234 0 0 0 chr11 116000208 116000234 -5843622 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 1 1470 270 189 6 38 chr11 116001460 116001538 -5842318 - B1F1 SINE Alu -43 74 6 2 1470 840 140 29 0 chr11 116001727 116001863 -5841993 - B1_Mur4 SINE Alu -9 141 2 3 1470 300 274 93 9 chr11 116001874 116001981 -5841875 - PB1D10 SINE Alu 0 117 2 4 1470 871 129 0 14 chr11 116003187 116003329 -5840527 - B1_Mus1 SINE Alu 0 148 9 5 1470 466 268 32 24 chr11 116003326 116003452 -5840404 - B1F SINE Alu -21 128 2 6 1470 239 266 31 0 chr11 116004970 116005034 -5838822 + MIRc SINE MIR 102 167 -101 7 1470 348 227 190 11 chr11 116005035 116005144 -5838712 + PB1D7 SINE Alu 3 126 -21 8 1470 769 140 0 0 chr11 116005430 116005544 -5838312 - B1_Mur1 SINE Alu -35 114 1 9 1470 530 333 10 73 chr11 116005544 116005634 -5838222 - ID_B1 SINE B4 -32 192 2 1 1470 367 341 15 0 chr11 116005957 116006092 -5837764 + B3 SINE B2 28 164 -52 1 1470 395 176 56 45 chr11 116006218 116006353 -5837503 + PB1D10 SINE Alu 7 139 -11 1 1470 819 137 7 21 chr11 116006343 116006485 -5837371 + B1_Mur1 SINE Alu 10 149 0 1 1470 351 234 52 21 chr11 116006534 116006630 -5837226 + PB1D7 SINE Alu 18 116 -4 1 1470 218 292 0 0 chr11 116006947 116007036 -5836820 + (CTG)n Simple_repeat Simple_repeat 3 91 0 1 1470 524 235 128 0 chr11 116008489 116008638 -5835218 + B3 SINE B2 24 191 -25 1 1470 578 39 13 0 chr11 116011263 116011340 -5832516 + (TC)n Simple_repeat Simple_repeat 2 79 0 1 1470 363 283 71 0 chr11 116011342 116011455 -5832401 - B1F1 SINE Alu -13 136 16 1 1470 545 211 0 82 chr11 116011464 116011611 -5832245 + ORR1D1 LTR MaLR 2 110 -257 1 1470 210 340 19 29 chr11 116011603 116011655 -5832201 - ID_B1 SINE B4 -90 134 33 2 1470 238 216 20 0 chr11 116011655 116011706 -5832150 - ID4_ SINE ID 0 83 32 2 1470 281 214 35 41 chr11 116011746 116011822 -5832034 - B1F SINE Alu -35 114 34 2 1470 424 242 61 0 chr11 116014366 116014465 -5829391 + PB1D7 SINE Alu 1 105 -15 2 1470 604 302 60 11 chr11 116014506 116014728 -5829128 + ID_B1 SINE B4 8 254 -38 2 1470 210 71 0 0 chr11 116014786 116014814 -5829042 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 2 1470 252 248 0 16 chr11 116015403 116015475 -5828381 - ID4 SINE ID -84 68 2 2 1470 482 257 67 0 chr11 116015677 116015782 -5828074 + PB1D10 SINE Alu 1 112 -5 2 1470 688 188 104 8 chr11 116015790 116015924 -5827932 + B1_Mur1 SINE Alu 3 149 0 2 1470 315 96 0 0 chr11 116015957 116016009 -5827847 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1470 1239 82 69 37 chr11 116017401 116017590 -5826266 - B2_Mm2 SINE B2 0 195 1 3 1470 319 207 58 47 chr11 116017825 116017911 -5825945 - ID SINE ID -136 88 2 3 1470 657 154 8 0 chr11 116017970 116018079 -5825777 + MTC LTR MaLR 2 111 -310 3 1470 973 138 122 5 chr11 116018079 116018276 -5825580 - URR1A DNA MER1_type 0 226 7 3 1470 1883 143 36 3 chr11 116018282 116018590 -5825266 + MTC LTR MaLR 104 421 0 3 1470 935 171 353 101 chr11 116018661 116018967 -5824889 + ORR1C2 LTR MaLR 2 384 0 3 1470 1029 74 0 0 chr11 116020013 116020161 -5823695 + (CA)n Simple_repeat Simple_repeat 2 149 0 3 1470 1255 27 7 0 chr11 116020682 116020828 -5823028 + B1_Mus1 SINE Alu 1 147 -1 3 1470 254 167 0 0 chr11 116020879 116020927 -5822929 + B1_Mur1 SINE Alu 102 149 0 3 1470 940 152 21 0 chr11 116020929 116021074 -5822782 + B1_Mus1 SINE Alu 1 148 0 3 1470 216 294 10 52 chr11 116021164 116021261 -5822595 + PB1D10 SINE Alu 25 117 0 3 1470 276 290 124 0 chr11 116021500 116021645 -5822211 + ID_B1 SINE B4 13 175 -49 4 1470 223 253 132 0 chr11 116021576 116021667 -5822189 + PB1D9 SINE Alu 18 120 0 4 1470 469 293 89 92 chr11 116021772 116022065 -5821791 + B4A SINE B4 1 292 0 4 1470 400 270 83 49 chr11 116022086 116022230 -5821626 + B1F SINE Alu 1 149 0 4 1470 518 254 57 14 chr11 116022302 116022442 -5821414 - B1_Mur1 SINE Alu -1 148 3 4 1470 186 277 221 54 chr11 116022477 116022626 -5821230 - MIR3 SINE MIR -22 186 13 4 1470 343 241 25 0 chr11 116023233 116023312 -5820544 + PB1D7 SINE Alu 35 115 -5 4 1470 426 268 0 0 chr11 116023321 116023403 -5820453 + RSINE1 SINE B4 5 86 -79 4 1470 270 0 0 0 chr11 116023446 116023476 -5820380 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 4 1470 249 210 0 138 chr11 116023773 116023867 -5819989 + B1F2 SINE Alu 1 81 -68 4 1470 221 313 0 0 chr11 116024249 116024316 -5819540 + ID4_ SINE ID 16 82 -1 5 1470 279 316 13 0 chr11 116024488 116024564 -5819292 - RSINE1 SINE B4 -45 120 44 5 1470 541 219 79 14 chr11 116025360 116025499 -5818357 - B1_Mur2 SINE Alu -1 148 1 5 1470 180 77 0 0 chr11 116025500 116025526 -5818330 + (TTC)n Simple_repeat Simple_repeat 2 27 0 5 1470 448 277 105 23 chr11 116025543 116025676 -5818180 - RSINE1 SINE B4 -17 148 5 5 1470 452 222 62 3 chr11 116025735 116025849 -5818007 + B1_Mus1 SINE Alu 1 120 0 5 1470 318 152 0 0 chr11 116025881 116025940 -5817916 + GA-rich Low_complexity Low_complexity 3 61 0 5 1470 1029 248 0 13 chr11 116026333 116026562 -5817294 + Lx5 LINE L1 6772 6997 -53 5 1470 638 189 22 22 chr11 116026640 116026775 -5817081 + B1_Mur1 SINE Alu 13 147 -2 5 1470 386 218 37 82 chr11 116026846 116026981 -5816875 - B1_Mur1 SINE Alu 0 149 21 5 1470 626 261 52 31 chr11 116027262 116027456 -5816400 + B3A SINE B2 1 198 0 6 1470 408 261 52 9 chr11 116027475 116027591 -5816265 + ID_B1 SINE B4 104 224 0 6 1470 357 226 21 127 chr11 116027664 116027806 -5816050 + MT2B LTR ERVL 155 281 -320 6 1470 597 214 8 1 chr11 116027679 116027816 -5816040 + B1_Mus1 SINE Alu 1 142 -7 6 1470 528 231 0 25 chr11 116027843 116027963 -5815893 + RSINE1 SINE B4 19 135 -30 6 1470 671 124 18 9 chr11 116028121 116028235 -5815621 + B1_Mus1 SINE Alu 34 148 0 6 1470 464 240 103 64 chr11 116028254 116028410 -5815446 + B3 SINE B2 52 213 -3 6 1470 462 216 139 31 chr11 116028426 116028555 -5815301 + B1F SINE Alu 1 143 -6 6 1470 22 35 0 0 chr11 116030027 116030056 -5813800 + AT_rich Low_complexity Low_complexity 1 29 0 6 1470 1025 159 21 26 chr11 116030160 116030354 -5813502 - MTB_Mm LTR MaLR -214 193 1 6 1470 361 189 0 22 chr11 116030373 116030442 -5813414 + GA-rich Low_complexity Low_complexity 2 69 0 7 1470 1047 117 0 16 chr11 116030442 116030625 -5813231 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 1470 361 189 0 22 chr11 116030625 116030647 -5813209 + polypurine Low_complexity Low_complexity 70 91 0 7 1470 1725 16 5 0 chr11 116031068 116031260 -5812596 - B2_Mm1a SINE B2 0 193 1 7 1470 2492 112 18 29 chr11 116031474 116031670 -5812186 + RLTR14 LTR ERV1 1 189 -193 7 1470 1246 92 17 23 chr11 116031670 116031691 -5812165 - B2_Mm1a SINE B2 -17 176 159 7 1470 261 0 0 0 chr11 116031691 116031720 -5812136 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 1470 1246 92 17 23 chr11 116031720 116031875 -5811981 - B2_Mm1a SINE B2 -35 158 1 7 1470 2492 112 18 29 chr11 116031875 116032064 -5811792 + RLTR14 LTR ERV1 190 381 -1 7 1470 326 161 270 70 chr11 116032257 116032357 -5811499 + PB1D9 SINE Alu 1 120 0 7 1470 408 261 163 11 chr11 116032546 116032724 -5811132 + MTE2a LTR MaLR 19 223 -156 7 1470 211 258 65 0 chr11 116032715 116032777 -5811079 - B3 SINE B2 -52 164 99 7 1470 383 287 61 23 chr11 116032776 116032908 -5810948 + B3 SINE B2 74 210 -6 8 1470 405 177 219 0 chr11 116033500 116033596 -5810260 + PB1D10 SINE Alu 1 117 0 8 1470 619 178 54 0 chr11 116035054 116035183 -5808673 - B1_Mus1 SINE Alu 0 148 13 8 1470 843 197 7 0 chr11 116035220 116035367 -5808489 + B1_Mur4 SINE Alu 1 148 -2 8 1470 261 169 0 144 chr11 116036133 116036223 -5807633 + PB1D10 SINE Alu 5 81 -36 8 1470 1016 138 58 58 chr11 116036792 116036899 -5806957 + MTC LTR MaLR 1 103 -318 8 1470 1343 161 4 9 chr11 116036899 116037125 -5806731 + URR1B DNA MER1_type 1 225 0 8 1470 1016 138 58 58 chr11 116037125 116037225 -5806631 + MTC LTR MaLR 104 208 -213 8 1470 721 244 34 6 chr11 116037231 116037408 -5806448 + Lx5 LINE L1 6869 7050 0 8 1470 827 161 168 21 chr11 116037415 116037606 -5806250 + MTC LTR MaLR 199 417 -4 8 1470 1613 42 16 0 chr11 116037607 116037797 -5806059 + B2_Mm1a SINE B2 1 193 0 8 1470 1093 70 21 7 chr11 116037815 116037960 -5805896 + B1_Mm SINE Alu 1 147 0 8 1470 213 121 0 0 chr11 116037960 116037993 -5805863 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1470 4285 157 170 9 chr11 116038007 116038968 -5804888 + MTC-int LTR MaLR 2 1116 -142 9 1470 643 184 28 10 chr11 116038952 116039125 -5804731 - B3 SINE B2 -6 189 10 9 1470 469 143 45 45 chr11 116039127 116039259 -5804597 + MTC-int LTR MaLR 1088 1219 -39 9 1470 304 162 29 14 chr11 116039259 116039328 -5804528 + MTC LTR MaLR 352 421 0 9 1470 232 304 129 11 chr11 116040249 116040342 -5803514 - MIR SINE MIR -92 170 67 9 1470 783 161 15 0 chr11 116040361 116040491 -5803365 - B1_Mur4 SINE Alu -6 144 13 9 1470 205 311 89 0 chr11 116041148 116041238 -5802618 + MER5A DNA MER1_type 4 101 -88 9 1470 265 208 50 0 chr11 116041239 116041322 -5802534 - PB1D10 SINE Alu -8 141 47 9 1470 217 354 0 0 chr11 116041340 116041405 -5802451 + MER5A DNA MER1_type 123 187 -2 9 1470 1197 164 19 5 chr11 116041830 116042038 -5801818 - B3 SINE B2 -5 211 1 9 1470 186 71 0 0 chr11 116042043 116042071 -5801785 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1470 1204 22 0 0 chr11 116042071 116042206 -5801650 - B1_Mus2 SINE Alu -11 136 2 9 1470 238 305 0 0 chr11 116042524 116042583 -5801273 - ID_B1 SINE B4 -67 157 99 1 1470 238 305 0 0 chr11 116042625 116042684 -5801172 - ID_B1 SINE B4 -67 157 99 1 1470 217 322 0 0 chr11 116042676 116042735 -5801121 - ID_B1 SINE B4 -67 157 99 1 1470 227 260 0 0 chr11 116042827 116042877 -5800979 - ID_B1 SINE B4 -67 157 108 1 1470 238 305 0 0 chr11 116042878 116042937 -5800919 - ID_B1 SINE B4 -67 157 99 1 1470 334 247 41 0 chr11 116042929 116043002 -5800854 - ID_B1 SINE B4 -67 157 82 1 1470 966 149 0 20 chr11 116043682 116043833 -5800023 + B1_Mur4 SINE Alu 3 150 0 1 1470 375 233 174 23 chr11 116043852 116043984 -5799872 - RSINE1 SINE B4 -10 155 4 1 1470 246 282 51 0 chr11 116046024 116046102 -5797754 + L1MD3 LINE L1 7896 7977 -18 1 1470 507 267 8 25 chr11 116046131 116046250 -5797606 + PB1D10 SINE Alu 1 117 0 1 1470 862 155 190 16 chr11 116046309 116046493 -5797363 - B3 SINE B2 0 216 1 1 1470 322 287 76 25 chr11 116047284 116047357 -5796499 + ID SINE ID 3 81 -143 1 1470 343 258 139 14 chr11 116047357 116047469 -5796387 + B1F2 SINE Alu 1 117 -3 1 1470 395 179 127 51 chr11 116047746 116047864 -5795992 + B1_Mur2 SINE Alu 22 148 -1 1 1470 465 264 58 106 chr11 116047873 116048064 -5795792 + B3A SINE B2 1 182 -16 1 1470 264 59 0 0 chr11 116048064 116048098 -5795758 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1470 465 264 58 106 chr11 116048098 116048114 -5795742 + B3A SINE B2 183 198 0 1 1470 408 163 180 34 chr11 116048123 116048212 -5795644 - B1_Mur1 SINE Alu 0 149 48 1 1470 295 315 42 0 chr11 116048290 116048433 -5795423 + (TATATG)n Simple_repeat Simple_repeat 5 153 0 1 1470 297 291 25 25 chr11 116048545 116048665 -5795191 + BC1_Mm scRNA scRNA 10 129 -23 1 1470 263 343 55 9 chr11 116049788 116049897 -5793959 - PB1D10 SINE Alu -3 114 1 1 1470 252 268 35 11 chr11 116049998 116050085 -5793771 + PB1D10 SINE Alu 28 116 -1 1 1470 245 98 24 0 chr11 116050972 116051013 -5792843 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1470 256 344 8 24 chr11 116051733 116051874 -5791982 - B1F1 SINE Alu -5 144 6 1 1470 440 214 23 93 chr11 116052143 116052272 -5791584 + MT2B LTR ERVL 145 264 -337 1 1470 1065 43 0 0 chr11 116052168 116052306 -5791550 + B1_Mus2 SINE Alu 9 146 -1 1 1470 192 77 0 0 chr11 116052307 116052333 -5791523 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1470 314 256 0 34 chr11 116052706 116052795 -5791061 + PB1D10 SINE Alu 14 99 -18 1 1470 293 306 122 43 chr11 116053141 116053182 -5790674 + B4 SINE B4 47 164 -128 1 1470 457 269 8 8 chr11 116053182 116053302 -5790554 + B1_Mur1 SINE Alu 1 120 -29 1 1470 293 306 122 43 chr11 116053302 116053329 -5790527 + B4 SINE B4 165 249 -43 1 1470 1485 58 16 0 chr11 116053344 116053533 -5790323 - B2_Mm1a SINE B2 0 193 2 1 1470 1202 69 6 28 chr11 116053769 116053789 -5790067 - B2_Mm2 SINE B2 -20 175 159 1 1470 267 103 0 0 chr11 116053789 116053828 -5790028 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1 1470 1202 69 6 28 chr11 116053828 116053985 -5789871 - B2_Mm2 SINE B2 -37 158 2 1 1470 1049 92 50 0 chr11 116054029 116054170 -5789686 - B1_Mus1 SINE Alu 0 148 1 1 1470 911 136 184 6 chr11 116054170 116054332 -5789524 - B2_Mm2 SINE B2 0 195 4 1 1470 786 24 561 0 chr11 116054424 116054547 -5789309 + B2_Mm1t SINE B2 1 192 -1 1 1470 378 0 0 0 chr11 116054889 116054931 -5788925 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1470 1246 117 32 0 chr11 116054932 116055120 -5788736 + B2_Mm2 SINE B2 1 194 -1 1 1470 1241 41 7 0 chr11 116055120 116055265 -5788591 + B1_Mm SINE Alu 1 147 0 1 1470 186 43 0 0 chr11 116055274 116055297 -5788559 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 1470 730 279 11 0 chr11 116055543 116055733 -5788123 + B3 SINE B2 17 208 -8 1 1470 524 252 93 19 chr11 116055833 116055995 -5787861 + B3 SINE B2 39 212 -4 1 1470 273 119 0 0 chr11 116056004 116056046 -5787810 + (GGA)n Simple_repeat Simple_repeat 1 42 0 1 1470 431 159 383 0 chr11 116056094 116056201 -5787655 + B1_Mus1 SINE Alu 1 148 0 1 1470 760 194 126 39 chr11 116056425 116056607 -5787249 + B3A SINE B2 1 198 0 1 1470 262 238 167 0 chr11 116057113 116057197 -5786659 - ID_B1 SINE B4 -25 199 102 1 1470 1215 48 0 7 chr11 116057313 116057460 -5786396 + B1_Mm SINE Alu 2 147 0 1 1470 408 295 14 62 chr11 116057604 116057754 -5786102 + PB1D7 SINE Alu 1 149 0 1 1470 619 90 18 9 chr11 116057817 116057931 -5785925 - B2_Mm2 SINE B2 -81 135 18 1 1470 279 0 0 0 chr11 116057945 116057976 -5785880 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 1470 249 268 27 40 chr11 116057979 116058053 -5785803 - ID SINE ID -151 73 1 1 1470 748 183 281 0 chr11 116058247 116058411 -5785445 - B3 SINE B2 -6 210 1 1 1470 231 301 14 0 chr11 116058754 116058827 -5785029 - ID4 SINE ID 0 83 10 1 1470 617 197 0 83 chr11 116058994 116059138 -5784718 - B1_Mus1 SINE Alu -16 132 1 1 1470 203 192 19 19 chr11 116060135 116060188 -5783668 + C-rich Low_complexity Low_complexity 3 55 0 1 1470 503 286 67 50 chr11 116061040 116061220 -5782636 + ID_B1 SINE B4 35 217 -7 1 1470 698 195 6 47 chr11 116061256 116061287 -5782569 + ID_B1 SINE B4 60 224 0 1 1470 1084 43 0 0 chr11 116061287 116061428 -5782428 + B1_Mus1 SINE Alu 8 148 0 1 1470 275 0 0 28 chr11 116061625 116061661 -5782195 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1470 1262 27 0 0 chr11 116061661 116061798 -5782058 - B1_Mm SINE Alu -8 139 3 1 1470 271 283 44 93 chr11 116061853 116062036 -5781820 + MER96B DNA hAT 119 292 -125 1 1470 381 298 24 16 chr11 116062085 116062208 -5781648 - MER110A LTR ERV1 0 468 345 1 1470 420 225 0 11 chr11 116062208 116062298 -5781558 + PB1D10 SINE Alu 3 91 -26 1 1470 755 207 7 33 chr11 116062372 116062522 -5781334 + B1_Mur1 SINE Alu 2 147 -2 1 1470 938 174 207 6 chr11 116062833 116063012 -5780844 + B3 SINE B2 2 216 0 1 1470 429 294 10 171 chr11 116063289 116063388 -5780468 + RSINE1 SINE B4 3 83 -82 1 1470 1199 144 27 0 chr11 116063388 116063576 -5780280 - B2_Mm2 SINE B2 -2 193 1 1 1470 429 294 10 171 chr11 116063576 116063669 -5780187 + RSINE1 SINE B4 84 164 -1 1 1470 380 198 0 85 chr11 116063709 116063803 -5780053 + B1_Mur1 SINE Alu 38 123 -26 1 1470 763 121 7 83 chr11 116063819 116063963 -5779893 - B1_Mus1 SINE Alu -4 144 12 1 1470 881 150 6 25 chr11 116064827 116064984 -5778872 + B3A SINE B2 2 155 -43 1 1470 524 199 191 7 chr11 116064979 116065131 -5778725 + B3 SINE B2 37 216 0 1 1470 813 192 14 7 chr11 116065210 116065357 -5778499 - B1_Mus1 SINE Alu 0 148 1 1 1470 1233 148 206 48 chr11 116065559 116065582 -5778274 - RMER17C LTR ERVK 0 410 384 1 1470 1543 49 22 0 chr11 116065582 116065767 -5778089 + B2_Mm1a SINE B2 1 189 -4 1 1470 1233 148 206 48 chr11 116065767 116066097 -5777759 - RMER17C LTR ERVK -27 383 1 1 1470 779 164 75 0 chr11 116066569 116066703 -5777153 + B1_Mur1 SINE Alu 1 144 -5 1 1470 853 90 19 71 chr11 116067138 116067293 -5776563 + B1_Mur3 SINE Alu 3 149 0 1 1470 405 0 0 0 chr11 116067305 116067350 -5776506 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1470 225 264 27 40 chr11 116067399 116067474 -5776382 + B4A SINE B4 2 75 -217 1 1470 276 282 70 0 chr11 116067555 116067660 -5776196 + RSINE1 SINE B4 78 275 -17 1 1470 186 336 35 61 chr11 116067833 116067947 -5775909 - MIRm SINE MIR -51 225 115 1 1470 272 176 98 10 chr11 116068099 116068196 -5775660 + BC1_Mm scRNA scRNA 3 107 -45 1 1470 313 370 42 8 chr11 116068550 116068670 -5775186 - PB1 SINE Alu -3 124 1 1 1470 824 225 57 29 chr11 116068756 116068966 -5774890 + B3 SINE B2 1 216 0 1 1470 1232 53 18 0 chr11 116068966 116069137 -5774719 + B2_Mm2 SINE B2 19 192 -3 1 1470 26 50 0 0 chr11 116069297 116069337 -5774519 + AT_rich Low_complexity Low_complexity 1 40 0 1 1470 269 279 25 0 chr11 116069360 116069439 -5774417 - ID_B1 SINE B4 -4 220 140 1 1470 563 289 46 69 chr11 116069440 116069656 -5774200 + B3A SINE B2 1 211 -5 1 1470 279 212 0 0 chr11 116069683 116069768 -5774088 + CT-rich Low_complexity Low_complexity 1 85 0 1 1470 458 277 0 18 chr11 116069819 116069933 -5773923 - PB1D10 SINE Alu -5 112 1 1 1470 231 297 0 15 chr11 116069949 116069975 -5773881 + B4A SINE B4 60 84 -208 1 1470 283 100 0 0 chr11 116069975 116070015 -5773841 + B1_Mus1 SINE Alu 1 40 -108 1 1470 194 0 0 37 chr11 116070016 116070043 -5773813 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 1470 288 0 0 0 chr11 116070179 116070211 -5773645 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1470 1379 89 0 30 chr11 116070214 116070411 -5773445 + B2_Mm2 SINE B2 2 192 -3 1 1470 235 279 14 14 chr11 116070986 116071055 -5772801 - U4 snRNA snRNA -76 69 1 1 1470 1230 68 0 0 chr11 116071097 116071244 -5772612 - B1_Mus2 SINE Alu 0 147 1 1 1470 491 241 21 94 chr11 116071251 116071397 -5772459 - L1MA6 LINE L1 -4 6296 6158 1 1470 291 28 0 0 chr11 116071397 116071433 -5772423 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1470 372 22 0 0 chr11 116071433 116071477 -5772379 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1470 491 241 21 94 chr11 116071477 116071521 -5772335 - L1MA6 LINE L1 -143 6157 6120 1 1470 284 296 0 33 chr11 116071544 116071668 -5772188 + B1F SINE Alu 6 149 0 1 1470 607 266 73 34 chr11 116072631 116072837 -5771019 - ID_B1 SINE B4 -8 216 3 1 1470 446 239 170 25 chr11 116072903 116073062 -5770794 - B3A SINE B2 -16 182 1 1 1470 243 146 0 0 chr11 116073066 116073107 -5770749 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 1 1470 224 222 36 36 chr11 116073108 116073164 -5770692 - ID4 SINE ID -2 81 26 2 1470 761 255 16 1 chr11 116073448 116073646 -5770210 + B3A SINE B2 7 213 -3 2 1470 207 189 0 0 chr11 116073703 116073756 -5770100 + T-rich Low_complexity Low_complexity 1 53 0 2 1470 1235 55 0 0 chr11 116073758 116073904 -5769952 - B1_Mus1 SINE Alu -1 147 2 2 1470 713 192 27 27 chr11 116074093 116074243 -5769613 - B1_Mur4 SINE Alu 0 150 1 2 1470 387 0 0 0 chr11 116074335 116074378 -5769478 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1470 1346 73 39 0 chr11 116074530 116074709 -5769147 + B2_Mm2 SINE B2 5 190 -5 2 1470 495 300 21 0 chr11 116075150 116075290 -5768566 + ID_B1 SINE B4 72 214 -10 2 1470 843 282 5 9 chr11 116075298 116075509 -5768347 + B3 SINE B2 1 210 -6 2 1470 804 194 24 0 chr11 116075533 116075710 -5768146 + B3A SINE B2 1 180 -36 2 1470 374 0 0 21 chr11 116075911 116075958 -5767898 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1470 350 230 29 39 chr11 116076409 116076513 -5767343 + PB1D10 SINE Alu 3 105 -12 2 1470 687 239 45 13 chr11 116078614 116078771 -5765085 + RSINE1 SINE B4 4 165 0 2 1470 317 257 71 35 chr11 116078821 116078953 -5764903 + PB1D10 SINE Alu 1 145 -2 2 1470 274 143 0 0 chr11 116078988 116079037 -5764819 + B1F1 SINE Alu 46 94 -55 2 1470 800 184 14 34 chr11 116079179 116079325 -5764531 - B1_Mur1 SINE Alu -2 147 5 2 1470 344 214 53 53 chr11 116080499 116080576 -5763280 + B4 SINE B4 11 87 -205 2 1470 312 286 120 28 chr11 116080576 116080766 -5763090 + B4 SINE B4 1 213 -79 2 1470 352 211 105 0 chr11 116080782 116080858 -5762998 + B3A SINE B2 37 120 -78 2 1470 207 288 0 0 chr11 116084919 116084985 -5758871 + CT-rich Low_complexity Low_complexity 1 66 0 2 1470 1185 68 0 0 chr11 116085920 116086066 -5757790 - B1_Mus1 SINE Alu -2 146 1 2 1470 402 115 0 0 chr11 116087227 116087288 -5756568 + (GGA)n Simple_repeat Simple_repeat 3 63 0 2 1470 232 221 0 95 chr11 116087289 116087384 -5756472 + RLTR25B LTR ERVK 428 513 -515 2 1470 531 181 48 0 chr11 116087306 116087399 -5756457 + B1_Mur4 SINE Alu 41 138 -12 2 1470 266 0 29 0 chr11 116087399 116087433 -5756423 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1470 531 181 48 0 chr11 116087433 116087444 -5756412 + B1_Mur4 SINE Alu 139 149 -1 2 1470 967 78 78 0 chr11 116087740 116087868 -5755988 - B1_Mus1 SINE Alu -10 138 1 2 1470 1229 54 0 0 chr11 116088596 116088743 -5755113 - B1_Mus1 SINE Alu 0 148 2 2 1470 235 254 60 0 chr11 116088766 116088833 -5755023 - MIRb SINE MIR -99 169 99 2 1470 256 303 73 0 chr11 116090538 116090647 -5753209 - MIRb SINE MIR -118 150 34 2 1470 264 59 0 0 chr11 116091177 116091211 -5752645 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 2 1470 250 298 0 50 chr11 116091541 116091661 -5752195 + (GGGTG)n Simple_repeat Simple_repeat 3 116 0 2 1470 240 35 0 0 chr11 116092512 116092541 -5751315 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1470 366 286 29 0 chr11 116092768 116092873 -5750983 - PB1D10 SINE Alu 0 117 10 2 1470 1184 61 7 0 chr11 116092916 116093063 -5750793 - B1_Mus1 SINE Alu 0 148 1 2 1470 557 217 8 17 chr11 116093094 116093211 -5750645 - B1_Mur1 SINE Alu 0 149 34 2 1470 22 0 0 0 chr11 116093267 116093289 -5750567 + AT_rich Low_complexity Low_complexity 1 22 0 2 1470 881 191 138 0 chr11 116093303 116093492 -5750364 + ID_B1 SINE B4 1 215 -9 2 1470 26 30 0 0 chr11 116093493 116093526 -5750330 + AT_rich Low_complexity Low_complexity 1 33 0 2 1470 212 232 0 0 chr11 116093641 116093697 -5750159 + C-rich Low_complexity Low_complexity 1 56 0 2 1470 207 100 0 0 chr11 116097198 116097228 -5746628 + (TCC)n Simple_repeat Simple_repeat 3 32 0 2 1470 23 0 0 0 chr11 116097272 116097295 -5746561 + AT_rich Low_complexity Low_complexity 1 23 0 2 1470 851 64 116 31 chr11 116097318 116097438 -5746418 + B1_Mur4 SINE Alu 5 137 -13 2 1470 216 0 0 0 chr11 116097438 116097462 -5746394 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1470 301 241 10 0 chr11 116097508 116097593 -5746263 - B1F SINE Alu -15 134 18 2 1470 754 194 27 20 chr11 116097630 116097777 -5746079 - B1_Mur1 SINE Alu 0 149 2 2 1470 889 198 150 0 chr11 116097865 116098052 -5745804 - B3 SINE B2 -1 215 1 2 1470 371 141 23 103 chr11 116098055 116098142 -5745714 - PB1D9 SINE Alu -21 99 20 2 1470 185 298 70 23 chr11 116098170 116098256 -5745600 + L2a LINE L2 3313 3402 -24 2 1470 460 173 96 29 chr11 116099904 116100017 -5743839 - PB1D7 SINE Alu 0 120 5 2 1470 1372 73 68 0 chr11 116100301 116100478 -5743378 + B2_Mm2 SINE B2 1 189 -6 2 1470 1581 37 16 10 chr11 116100483 116100675 -5743181 + B2_Mm1a SINE B2 1 193 0 2 1470 279 335 60 73 chr11 116101470 116101702 -5742154 + MER33 DNA MER1_type 34 262 -62 2 1470 747 276 29 5 chr11 116101702 116101906 -5741950 + ID_B1 SINE B4 6 214 -10 2 1470 317 22 0 43 chr11 116101906 116101953 -5741903 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1470 1036 190 53 10 chr11 116101954 116102161 -5741695 + B3 SINE B2 1 216 0 2 1470 1189 68 0 0 chr11 116102180 116102327 -5741529 + B1_Mus1 SINE Alu 2 148 0 2 1470 318 50 0 0 chr11 116102327 116102367 -5741489 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1470 284 127 18 0 chr11 116102385 116102440 -5741416 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 2 1470 219 194 157 43 chr11 116102509 116102579 -5741277 + ID_B1 SINE B4 85 162 -62 2 1470 312 265 165 10 chr11 116102626 116102729 -5741127 + PB1D7 SINE Alu 1 119 -1 2 1470 245 191 191 0 chr11 116103641 116103709 -5740147 + RSINE1 SINE B4 72 152 -13 2 1470 324 170 0 0 chr11 116104900 116104959 -5738897 - B2_Mm2 SINE B2 -107 109 51 2 1470 1304 85 23 6 chr11 116105008 116105185 -5738671 - B2_Mm2 SINE B2 -14 181 2 2 1470 229 232 18 0 chr11 116105622 116105678 -5738178 + BC1_Mm scRNA scRNA 22 78 -74 2 1470 276 200 147 0 chr11 116107275 116107350 -5736506 - B3 SINE B2 -130 86 1 2 1470 594 118 18 14 chr11 116108102 116108227 -5735629 + B1_Mur4 SINE Alu 27 150 0 2 1470 393 219 190 17 chr11 116108291 116108306 -5735550 + B1F SINE Alu 2 137 -12 2 1470 434 240 59 10 chr11 116108306 116108407 -5735449 + ID_B1 SINE B4 107 212 -12 2 1470 191 217 21 21 chr11 116108728 116108775 -5735081 + MER5B DNA MER1_type 127 173 -5 2 1470 350 289 6 4 chr11 116108849 116108953 -5734903 - PB1D10 SINE Alu -33 116 12 2 1470 256 293 65 91 chr11 116108859 116109013 -5734843 - MT2B LTR ERVL -339 262 113 2 1470 298 338 0 0 chr11 116110397 116110468 -5733388 - B4A SINE B4 -4 288 218 2 1470 509 122 264 27 chr11 116110490 116110600 -5733256 - B1_Mur2 SINE Alu -11 138 3 2 1470 393 272 60 60 chr11 116110610 116110778 -5733078 - B3A SINE B2 0 198 31 2 1470 474 198 21 0 chr11 116110777 116110873 -5732983 - PB1D9 SINE Alu -16 104 7 2 1470 401 170 74 11 chr11 116110895 116110990 -5732866 - B2_Mm2 SINE B2 -2 193 93 2 1470 393 93 0 0 chr11 116110988 116111042 -5732814 + RLTR16 LTR ERVK 7 60 -445 2 1470 510 158 21 21 chr11 116111064 116111161 -5732695 + RLTR16 LTR ERVK 409 505 0 2 1470 765 78 0 0 chr11 116111161 116111264 -5732592 - B2_Mm2 SINE B2 -91 104 2 2 1470 602 290 77 0 chr11 116111289 116111472 -5732384 - B3A SINE B2 0 198 2 2 1470 444 181 191 0 chr11 116111510 116111615 -5732241 - B4A SINE B4 -61 231 107 2 1470 362 283 10 0 chr11 116113427 116113526 -5730330 + B1F SINE Alu 2 101 -48 2 1470 236 211 0 95 chr11 116113662 116113725 -5730131 + 4.5SRNA scRNA scRNA 32 88 -6 2 1470 496 198 83 0 chr11 116113675 116113771 -5730085 + B1F2 SINE Alu 44 147 -2 2 1470 1120 195 24 0 chr11 116113791 116113996 -5729860 + B3 SINE B2 2 211 -5 2 1470 1077 75 0 58 chr11 116114223 116114379 -5729477 + B1_Mus1 SINE Alu 2 148 0 2 1470 230 313 61 0 chr11 116114568 116114667 -5729189 + B1F1 SINE Alu 2 106 -43 2 1470 241 348 32 11 chr11 116114852 116114945 -5728911 + MLT1D LTR MaLR 24 118 -387 2 1470 252 265 7 0 chr11 116114947 116115017 -5728839 - PB1D7 SINE Alu -48 79 6 2 1470 1584 53 5 0 chr11 116115105 116115294 -5728562 + B2_Mm1t SINE B2 1 190 -3 2 1470 450 197 62 6 chr11 116116933 116117112 -5726744 + RMER17C LTR ERVK 88 276 -134 2 1470 216 0 0 0 chr11 116117113 116117137 -5726719 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1470 1165 88 117 0 chr11 116117986 116118157 -5725699 + B2_Mm2 SINE B2 2 192 -3 2 1470 321 303 11 33 chr11 116118259 116118351 -5725505 + RSINE1 SINE B4 59 148 -17 2 1470 22 35 0 0 chr11 116118375 116118404 -5725452 + AT_rich Low_complexity Low_complexity 1 29 0 2 1470 2202 97 50 0 chr11 116118581 116118900 -5724956 + L1_Mus4 LINE L1 6301 6635 -1 2 1470 237 114 45 0 chr11 116118900 116118944 -5724912 + B1_Mus2 SINE Alu 102 147 0 2 1470 210 224 155 0 chr11 116119493 116119551 -5724305 + B1F2 SINE Alu 62 128 -21 2 1470 1098 66 7 0 chr11 116119626 116119763 -5724093 + B1_Mus1 SINE Alu 2 139 -9 2 1470 354 233 39 77 chr11 116119809 116119939 -5723917 + RSINE1 SINE B4 8 132 -33 2 1470 288 0 0 0 chr11 116119963 116119995 -5723861 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1470 382 278 9 18 chr11 116120250 116120360 -5723496 - PB1D9 SINE Alu -9 111 3 2 1470 500 268 32 8 chr11 116120360 116120461 -5723395 + RSINE1 SINE B4 52 155 -10 3 1470 273 244 119 82 chr11 116120508 116120642 -5723214 + MT2B2 LTR ERVL 120 258 -326 3 1470 692 184 24 0 chr11 116120558 116120683 -5723173 + B1_Mur3 SINE Alu 22 149 0 3 1470 379 277 69 28 chr11 116120684 116120699 -5723157 + B4A SINE B4 71 91 -201 3 1470 534 207 96 7 chr11 116120699 116120835 -5723021 + B1_Mur2 SINE Alu 1 148 -1 3 1470 218 312 16 0 chr11 116120856 116120920 -5722936 + BC1_Mm scRNA scRNA 15 79 -73 3 1470 496 258 0 0 chr11 116122485 116122582 -5721274 + B1F SINE Alu 2 98 -51 3 1470 351 78 0 0 chr11 116122582 116122633 -5721223 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1470 344 314 16 40 chr11 116122657 116122677 -5721179 + B4A SINE B4 71 87 -205 3 1470 739 176 7 35 chr11 116122677 116122812 -5721044 + B1_Mur1 SINE Alu 3 133 -16 3 1470 338 306 30 20 chr11 116122812 116122912 -5720944 + PB1D9 SINE Alu 1 101 -19 3 1470 283 143 54 0 chr11 116123435 116123491 -5720365 + B3 SINE B2 1 59 -157 3 1470 378 0 0 0 chr11 116123827 116123869 -5719987 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1470 543 214 8 57 chr11 116123937 116124032 -5719824 + B1_Mur2 SINE Alu 12 107 -42 3 1470 249 33 0 0 chr11 116124032 116124062 -5719794 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 3 1470 543 214 8 57 chr11 116124062 116124090 -5719766 + B1_Mur2 SINE Alu 108 129 -20 3 1470 321 304 0 0 chr11 116124666 116124745 -5719111 - ID4 SINE ID -3 80 2 3 1470 273 29 0 0 chr11 116124790 116124824 -5719032 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 3 1470 345 206 20 71 chr11 116124826 116124925 -5718931 - PB1D9 SINE Alu -5 115 22 3 1470 986 182 62 24 chr11 116124949 116125157 -5718699 - B3 SINE B2 0 216 1 3 1470 253 222 15 45 chr11 116125504 116125570 -5718286 + PB1D10 SINE Alu 2 65 -52 3 1470 260 284 74 0 chr11 116125605 116125700 -5718156 + PB1D10 SINE Alu 16 117 0 3 1470 754 240 58 58 chr11 116125708 116125916 -5717940 + B3 SINE B2 7 214 -2 3 1470 1012 78 234 0 chr11 116125916 116126070 -5717786 + B2_Mm2 SINE B2 2 191 -4 3 1470 1200 55 7 0 chr11 116126181 116126327 -5717529 + B1_Mus1 SINE Alu 2 148 0 3 1470 474 259 0 26 chr11 116127122 116127227 -5716629 + PB1D10 SINE Alu 2 106 -11 3 1470 240 35 0 0 chr11 116127227 116127256 -5716600 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 3 1470 187 241 78 33 chr11 116127284 116127374 -5716482 + MIRc SINE MIR 37 130 -138 3 1470 896 57 186 0 chr11 116127463 116127587 -5716269 - B1_Mm SINE Alu 0 147 1 3 1470 440 217 69 42 chr11 116127683 116127827 -5716029 - B1F SINE Alu -1 148 1 3 1470 681 209 22 0 chr11 116128338 116128472 -5715384 - B1_Mus2 SINE Alu -10 137 1 3 1470 470 255 0 54 chr11 116128578 116128690 -5715166 - PB1D9 SINE Alu 0 120 15 3 1470 570 239 202 52 chr11 116128725 116128977 -5714879 - B4A SINE B4 0 292 3 3 1470 318 154 24 82 chr11 116129153 116129238 -5714618 + B2_Mm1t SINE B2 114 193 0 3 1470 538 322 16 32 chr11 116129247 116129433 -5714423 - ID_B1 SINE B4 -41 183 1 3 1471 551 260 20 14 chr11 116129926 116130074 -5713782 - B1F SINE Alu 0 149 1 3 1471 788 37 0 9 chr11 116130114 116130222 -5713634 - B1_Mm SINE Alu 0 147 41 3 1471 304 297 8 51 chr11 116130127 116130173 -5713683 - RLTR25B LTR ERVK -497 531 450 3 1471 305 127 0 18 chr11 116130173 116130229 -5713627 - 4.5SRNA scRNA scRNA -8 86 32 3 1471 304 297 8 51 chr11 116130229 116130244 -5713612 - RLTR25B LTR ERVK -497 449 420 3 1471 1059 207 35 10 chr11 116130263 116130463 -5713393 - B3 SINE B2 -11 205 1 3 1471 323 218 154 29 chr11 116130509 116130613 -5713243 + PB1D10 SINE Alu 1 117 0 3 1471 568 279 65 0 chr11 116131419 116131573 -5712283 + RSINE1 SINE B4 2 165 0 3 1471 639 185 26 40 chr11 116131616 116131768 -5712088 + B3A SINE B2 6 155 -43 3 1471 306 189 0 0 chr11 116131768 116131821 -5712035 - B3 SINE B2 -80 136 84 3 1471 339 266 25 0 chr11 116132047 116132126 -5711730 + B1F1 SINE Alu 68 148 -1 3 1471 222 224 86 0 chr11 116132274 116132332 -5711524 + ID4_ SINE ID 8 70 -13 3 1471 274 254 16 0 chr11 116132436 116132499 -5711357 + L1MC4 LINE L1 6942 7005 -1037 3 1471 574 257 55 78 chr11 116132700 116132879 -5710977 - B3 SINE B2 -1 215 42 3 1471 1161 68 0 20 chr11 116132879 116133028 -5710828 - B1_Mus1 SINE Alu 0 148 3 3 1471 574 257 55 78 chr11 116133028 116133067 -5710789 - B3 SINE B2 -175 41 2 3 1471 240 35 0 0 chr11 116133815 116133844 -5710012 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1471 313 287 28 47 chr11 116133926 116134032 -5709824 + PB1D10 SINE Alu 13 116 -1 3 1471 944 187 75 5 chr11 116134035 116134234 -5709622 + B3 SINE B2 4 216 0 3 1471 911 216 84 27 chr11 116134342 116134604 -5709252 + B4A SINE B4 2 278 -14 3 1471 207 242 0 0 chr11 116135334 116135396 -5708460 + (CCG)n Simple_repeat Simple_repeat 2 63 0 3 1471 275 266 42 84 chr11 116135650 116135769 -5708087 + B4A SINE B4 42 155 -137 3 1471 296 210 11 110 chr11 116135692 116135783 -5708073 + MT2B2 LTR ERVL 160 241 -343 3 1471 453 250 10 0 chr11 116135707 116135807 -5708049 + PB1D7 SINE Alu 10 110 -10 3 1471 309 26 0 0 chr11 116135807 116135845 -5708011 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1471 947 213 42 33 chr11 116136146 116136360 -5707496 + B3 SINE B2 1 216 0 3 1471 237 307 0 74 chr11 116136401 116136496 -5707360 + RSINE1 SINE B4 77 164 -1 3 1471 1153 88 91 29 chr11 116136551 116136726 -5707130 - B2_Mm2 SINE B2 -9 186 1 3 1471 530 167 55 9 chr11 116136744 116136853 -5707003 - RMER10B LTR ERVL -48 350 237 3 1471 1471 153 195 24 chr11 116136931 116137259 -5706597 + ORR1B1 LTR MaLR 3 386 -8 3 1471 878 168 6 35 chr11 116137262 116137435 -5706421 - MTD LTR MaLR -31 388 221 3 1471 1185 81 0 0 chr11 116137437 116137585 -5706271 + B1_Mus1 SINE Alu 1 148 0 3 1471 282 333 55 45 chr11 116137630 116137667 -5706189 + L1MB7 LINE L1 5701 5738 -451 3 1471 648 153 26 116 chr11 116137667 116137721 -5706135 + B1_Mur4 SINE Alu 1 54 -96 3 1471 1613 52 0 0 chr11 116137721 116137913 -5705943 + B2_Mm1a SINE B2 2 193 0 3 1471 648 153 26 116 chr11 116137913 116138013 -5705843 + B1_Mur4 SINE Alu 55 141 -9 3 1471 228 35 0 0 chr11 116138013 116138042 -5705814 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1471 631 284 52 28 chr11 116138042 116138317 -5705539 + L1MB7 LINE L1 5739 6019 -340 3 1471 1455 53 5 51 chr11 116138473 116138670 -5705186 - B2_Mm2 SINE B2 -7 188 1 3 1471 710 237 118 0 chr11 116138809 116138995 -5704861 + ID_B1 SINE B4 1 208 -16 3 1471 264 122 0 0 chr11 116138995 116139036 -5704820 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 3 1471 927 215 68 24 chr11 116139040 116139245 -5704611 + B3 SINE B2 3 216 0 3 1471 1046 152 202 0 chr11 116139262 116139440 -5704416 + B3 SINE B2 3 216 0 3 1471 24 0 0 0 chr11 116139444 116139468 -5704388 + AT_rich Low_complexity Low_complexity 1 24 0 3 1471 515 279 32 74 chr11 116139483 116139521 -5704335 + B3 SINE B2 2 35 -181 3 1471 1190 83 47 12 chr11 116139521 116139672 -5704184 + B2_Mm2 SINE B2 1 158 -37 3 1471 186 43 0 0 chr11 116139672 116139695 -5704161 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1471 1190 83 47 12 chr11 116139695 116139713 -5704143 + B2_Mm2 SINE B2 159 176 -19 3 1471 515 279 32 74 chr11 116139713 116139891 -5703965 + B3 SINE B2 36 209 -7 3 1471 1253 28 0 7 chr11 116139899 116140045 -5703811 + B1_Mus1 SINE Alu 2 146 -2 3 1471 197 33 33 0 chr11 116140045 116140075 -5703781 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1471 746 228 0 7 chr11 116140085 116140231 -5703625 + B1_Mur3 SINE Alu 4 148 -1 3 1471 1209 68 0 0 chr11 116140269 116140415 -5703441 - B1_Mus1 SINE Alu -2 146 1 3 1471 1706 16 11 0 chr11 116140630 116140820 -5703036 - B2_Mm1a SINE B2 0 193 2 3 1471 363 276 20 0 chr11 116140823 116140921 -5702935 - PB1 SINE Alu 0 127 28 3 1471 459 0 0 0 chr11 116140921 116140972 -5702884 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1471 362 231 0 0 chr11 116141002 116141067 -5702789 + ID4_ SINE ID 6 70 -13 3 1471 270 280 13 26 chr11 116141067 116141079 -5702777 + B4 SINE B4 6 81 -211 3 1471 490 223 52 35 chr11 116141114 116141230 -5702626 - PB1D7 SINE Alu 0 120 3 3 1471 538 284 28 7 chr11 116141239 116141381 -5702475 - B1F SINE Alu -4 145 1 3 1471 1236 84 17 0 chr11 116141414 116141593 -5702263 - B2_Mm2 SINE B2 -6 189 8 3 1471 261 0 0 0 chr11 116141700 116141729 -5702127 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1471 946 184 28 17 chr11 116141763 116141940 -5701916 - B3A SINE B2 -18 180 2 3 1471 360 274 47 0 chr11 116142122 116142228 -5701628 + PB1D10 SINE Alu 2 112 -5 3 1471 1039 151 53 11 chr11 116145979 116146166 -5697690 + B2_Mm2 SINE B2 1 195 0 3 1471 1023 83 0 94 chr11 116151019 116151178 -5692678 + B1_Mur3 SINE Alu 2 145 -4 3 1471 444 37 0 0 chr11 116151683 116151737 -5692119 + (CGAA)n Simple_repeat Simple_repeat 1 54 0 3 1471 4490 104 92 11 chr11 116152944 116153643 -5690213 - RMER6A LTR ERVK 0 756 2 3 1471 288 148 0 0 chr11 116156401 116156462 -5687394 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1471 322 306 17 28 chr11 116157540 116157659 -5686197 + PB1D10 SINE Alu 1 117 0 3 1471 231 186 0 0 chr11 116159057 116159100 -5684756 + (CCCG)n Simple_repeat Simple_repeat 2 44 0 3 1471 247 258 0 15 chr11 116161792 116161859 -5681997 - ID4 SINE ID -15 68 3 3 1471 294 290 106 88 chr11 116161978 116162148 -5681708 + B3 SINE B2 44 216 0 4 1471 539 202 63 16 chr11 116162230 116162356 -5681500 + B1_Mur2 SINE Alu 18 149 0 4 1471 427 289 19 0 chr11 116162818 116162922 -5680934 + PB1D9 SINE Alu 3 108 -12 4 1471 192 40 0 0 chr11 116162924 116162949 -5680907 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1471 312 268 87 24 chr11 116163032 116163071 -5680785 + L1M4 LINE L1 5105 5143 -1003 4 1471 2855 107 34 24 chr11 116163071 116163485 -5680371 + MTC LTR MaLR 1 418 -3 4 1471 312 268 87 24 chr11 116163485 116163571 -5680285 + L1M4 LINE L1 5144 5237 -909 4 1471 245 293 12 0 chr11 116163586 116163668 -5680188 + L1M4 LINE L1 5691 5773 -411 4 1471 316 302 41 32 chr11 116163687 116163810 -5680046 + RSINE1 SINE B4 14 137 -28 4 1471 25 0 0 0 chr11 116163844 116163869 -5679987 + AT_rich Low_complexity Low_complexity 1 25 0 4 1471 818 137 260 6 chr11 116163869 116164038 -5679818 - B3 SINE B2 0 216 5 4 1471 225 182 115 83 chr11 116164057 116164153 -5679703 + L1M4 LINE L1 5775 5873 -311 4 1471 666 169 32 0 chr11 116164160 116164284 -5679572 + B1_Mur3 SINE Alu 9 136 -13 4 1471 346 196 228 0 chr11 116164303 116164395 -5679461 - B1_Mur4 SINE Alu -8 142 30 4 1471 216 0 0 0 chr11 116164436 116164460 -5679396 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1471 421 311 0 92 chr11 116164485 116164582 -5679274 + B4 SINE B4 2 83 -209 4 1471 286 302 71 30 chr11 116164582 116164681 -5679175 + B1_Mm SINE Alu 2 104 -43 4 1471 212 377 34 55 chr11 116164684 116164830 -5679026 - RSINE1 SINE B4 -8 157 15 4 1471 677 314 10 10 chr11 116164735 116164928 -5678928 + B4 SINE B4 96 288 -4 4 1471 183 205 0 0 chr11 116164944 116164983 -5678873 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1471 246 295 35 18 chr11 116164989 116165103 -5678753 + L1MB3 LINE L1 5951 6066 -117 4 1471 312 303 22 43 chr11 116165187 116165205 -5678651 - ID_B1 SINE B4 -8 216 82 4 1471 473 256 0 25 chr11 116165205 116165325 -5678531 - B1F1 SINE Alu -32 117 1 4 1471 701 184 55 34 chr11 116165358 116165504 -5678352 - B1F1 SINE Alu 0 149 1 4 1471 402 200 32 7 chr11 116165685 116165790 -5678066 - B1F SINE Alu -9 140 1 4 1471 742 217 137 32 chr11 116166591 116166781 -5677075 + B3 SINE B2 1 210 -6 4 1471 774 145 48 48 chr11 116166809 116166976 -5676880 + B2_Mm2 SINE B2 3 169 -26 4 1471 514 215 18 18 chr11 116168275 116168384 -5675472 + B1F SINE Alu 40 148 -1 4 1471 239 250 260 40 chr11 116168417 116168517 -5675339 - B1_Mur2 SINE Alu -27 122 1 4 1471 412 260 10 20 chr11 116168589 116168687 -5675169 - RSINE1 SINE B4 -66 99 3 4 1471 710 209 26 120 chr11 116168691 116168925 -5674931 - B3 SINE B2 0 216 5 4 1471 1219 97 57 0 chr11 116169547 116169723 -5674133 + B2_Mm1t SINE B2 2 187 -6 4 1471 446 128 19 130 chr11 116169853 116169961 -5673895 - MYSERV6-int LTR ERVK -1 8958 8863 4 1471 1010 136 97 0 chr11 116170047 116170223 -5673633 - B2_Mm2 SINE B2 -2 193 1 4 1471 2183 65 57 16 chr11 116170350 116170647 -5673209 + L1_Mus4 LINE L1 6305 6615 -21 4 1471 1460 99 16 0 chr11 116170647 116170838 -5673018 + B2_Mm2 SINE B2 2 195 0 4 1471 2183 65 57 16 chr11 116170838 116170854 -5673002 + L1_Mus4 LINE L1 6616 6631 -5 4 1471 186 43 0 0 chr11 116170862 116170885 -5672971 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1471 1156 267 110 134 chr11 116171106 116171551 -5672305 - MYSERV-int LTR ERVK -275 6275 5799 4 1471 1245 54 0 0 chr11 116171551 116171699 -5672157 - B1_Mus1 SINE Alu 0 148 1 4 1471 1156 267 110 134 chr11 116171699 116172029 -5671827 - MYSERV-int LTR ERVK -752 5798 5490 4 1471 1219 36 0 0 chr11 116172029 116172167 -5671689 + B1_Mm SINE Alu 1 138 -9 4 1471 1156 267 110 134 chr11 116172167 116172347 -5671509 - MYSERV-int LTR ERVK -1061 5489 5342 4 1471 626 203 70 85 chr11 116172351 116172550 -5671306 - RMER4A LTR ERVK -29 437 242 4 1471 1123 272 115 56 chr11 116172552 116173055 -5670801 - MYSERV-int LTR ERVK -1461 5089 4557 4 1471 1496 70 0 26 chr11 116173146 116173337 -5670519 + B2_Mm2 SINE B2 3 188 -7 4 1471 250 313 24 0 chr11 116173410 116173493 -5670363 - RMER6-int LTR ERVK -196 2981 2897 4 1471 270 182 0 0 chr11 116173497 116173563 -5670293 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1471 203 351 34 26 chr11 116173746 116173863 -5669993 - MIRb SINE MIR -21 247 130 4 1471 1377 98 5 0 chr11 116174355 116174539 -5669317 + B2_Mm1t SINE B2 2 186 -7 4 1471 369 111 0 0 chr11 116174562 116174616 -5669240 - B1_Mur2 SINE Alu -20 129 76 4 1471 189 0 0 0 chr11 116174616 116174637 -5669219 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 4 1471 551 231 21 76 chr11 116174920 116175065 -5668791 - B1_Mur2 SINE Alu -8 141 5 4 1471 437 331 41 24 chr11 116175084 116175254 -5668602 - B4A SINE B4 -74 218 46 4 1471 437 238 69 8 chr11 116175298 116175429 -5668427 - ID_B1 SINE B4 -7 217 79 4 1471 21 36 0 0 chr11 116175732 116175760 -5668096 + AT_rich Low_complexity Low_complexity 1 28 0 4 1471 349 247 40 30 chr11 116175784 116175884 -5667972 - PB1D10 SINE Alu 0 117 17 4 1471 736 196 0 29 chr11 116175910 116176047 -5667809 + RSINE1 SINE B4 3 135 -30 4 1471 333 0 0 0 chr11 116176051 116176088 -5667768 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1471 28 0 0 0 chr11 116176088 116176116 -5667740 + AT_rich Low_complexity Low_complexity 1 28 0 4 1471 759 209 165 0 chr11 116176978 116177160 -5666696 + MTD LTR MaLR 1 212 -207 4 1471 660 312 28 31 chr11 116177221 116177512 -5666344 - B4A SINE B4 -2 290 1 4 1471 619 210 8 8 chr11 116177521 116177646 -5666210 - B1_Mur1 SINE Alu -1 148 24 4 1471 198 0 0 0 chr11 116177854 116177876 -5665980 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1471 1272 35 0 0 chr11 116177876 116178021 -5665835 - B1_Mm SINE Alu -2 145 1 4 1471 441 286 98 0 chr11 116178029 116178162 -5665694 - B1F SINE Alu -3 146 1 4 1471 516 248 52 15 chr11 116178171 116178189 -5665667 - ID_B1 SINE B4 -4 220 82 4 1471 725 147 0 0 chr11 116178189 116178305 -5665551 - B1_Mus1 SINE Alu -32 116 1 4 1471 711 189 0 8 chr11 116178352 116178480 -5665376 - B3 SINE B2 -86 130 4 4 1471 2237 155 48 25 chr11 116178630 116179028 -5664828 - MTB_Mm LTR MaLR 0 407 1 4 1471 239 304 0 0 chr11 116179057 116179136 -5664720 + Lx9 LINE L1 6723 6801 -672 4 1471 924 226 77 0 chr11 116179141 116179336 -5664520 + B3 SINE B2 1 210 -6 4 1471 414 153 29 13 chr11 116179425 116179512 -5664344 - MTB_Mm LTR MaLR -313 108 19 4 1471 261 0 0 0 chr11 116179582 116179611 -5664245 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1471 222 37 0 0 chr11 116179611 116179637 -5664219 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1471 326 293 89 19 chr11 116179645 116179819 -5664037 + Lx9 LINE L1 7041 7259 -385 4 1471 673 216 63 28 chr11 116179912 116180055 -5663801 + B1_Mur1 SINE Alu 1 148 -1 4 1471 932 84 0 8 chr11 116181450 116181582 -5662274 + B1_Mus2 SINE Alu 16 146 -1 4 1471 630 25 0 0 chr11 116182369 116182450 -5661406 - B1_Mus2 SINE Alu 0 147 67 4 1471 385 50 33 0 chr11 116183785 116183845 -5660011 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1471 204 67 0 0 chr11 116183845 116183875 -5659981 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1471 514 205 129 43 chr11 116183879 116184009 -5659847 + L1ME2 LINE L1 5678 5828 -336 4 1471 337 270 74 68 chr11 116184009 116184172 -5659684 + RSINE1 SINE B4 2 165 0 4 1471 514 205 129 43 chr11 116184172 116184204 -5659652 + L1ME2 LINE L1 5829 5854 -310 4 1471 225 167 0 53 chr11 116184204 116184261 -5659595 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 4 1471 499 187 0 12 chr11 116184262 116184435 -5659421 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 1471 573 199 0 0 chr11 116184959 116185125 -5658731 + (CA)n Simple_repeat Simple_repeat 2 167 0 4 1471 225 188 21 0 chr11 116185137 116185185 -5658671 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1471 287 338 0 0 chr11 116185231 116185311 -5658545 + ID4_ SINE ID 2 81 -2 4 1471 243 211 19 0 chr11 116186010 116186062 -5657794 - Lx6 LINE L1 -215 7245 7193 4 1471 674 156 39 8 chr11 116186195 116186324 -5657532 - URR1B DNA MER1_type 0 225 93 4 1471 1108 65 0 25 chr11 116186324 116186481 -5657375 + B2_Mm2 SINE B2 2 154 -41 4 1471 496 189 44 18 chr11 116186466 116186482 -5657374 - URR1B DNA MER1_type -109 116 102 4 1471 272 48 0 23 chr11 116186482 116186525 -5657331 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 4 1471 496 189 44 18 chr11 116186525 116186621 -5657235 - URR1B DNA MER1_type -124 101 1 4 1471 763 195 46 7 chr11 116186621 116186772 -5657084 - MTD LTR MaLR -265 156 1 4 1471 615 129 0 19 chr11 116187791 116187894 -5655962 - B1_Mur2 SINE Alu -1 148 48 4 1471 508 215 0 53 chr11 116187914 116188027 -5655829 - 5S rRNA rRNA -1 120 14 4 1471 252 0 0 0 chr11 116189369 116189397 -5654459 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1471 1114 61 0 0 chr11 116189397 116189529 -5654327 - B1_Mus1 SINE Alu -13 135 4 4 1471 426 20 0 0 chr11 116189658 116189709 -5654147 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1471 1296 113 27 0 chr11 116189714 116189899 -5653957 + B2_Mm2 SINE B2 2 191 -4 4 1471 555 271 79 67 chr11 116190311 116190564 -5653292 + B4A SINE B4 11 266 -26 4 1471 428 261 75 0 chr11 116190599 116190733 -5653123 - MER5B DNA MER1_type -21 157 14 4 1471 21 57 0 0 chr11 116192022 116192057 -5651799 + AT_rich Low_complexity Low_complexity 1 35 0 4 1471 246 32 0 0 chr11 116194205 116194236 -5649620 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1471 294 95 0 0 chr11 116197827 116197869 -5645987 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1471 458 282 0 0 chr11 116198752 116198855 -5645001 + ID_B1 SINE B4 88 190 -34 4 1471 650 221 8 8 chr11 116202371 116202499 -5641357 - B1_Mur1 SINE Alu -18 131 4 4 1471 838 243 64 10 chr11 116202499 116202703 -5641153 - B3 SINE B2 -1 215 1 4 1471 225 0 0 0 chr11 116204255 116204280 -5639576 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 4 1471 995 109 14 0 chr11 116204885 116205023 -5638833 - B1_Mus2 SINE Alu -7 140 1 4 1471 301 263 34 42 chr11 116205026 116205145 -5638711 - PB1D9 SINE Alu 0 120 3 5 1471 223 250 0 54 chr11 116205683 116205776 -5638080 + A-rich Low_complexity Low_complexity 2 89 0 5 1471 418 247 11 166 chr11 116207494 116207579 -5636277 + B1F2 SINE Alu 1 73 -76 5 1471 1176 30 0 0 chr11 116207579 116207711 -5636145 + B1_Mus1 SINE Alu 4 135 -13 5 1471 401 0 20 0 chr11 116207711 116207760 -5636096 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1471 418 247 11 166 chr11 116207760 116207848 -5636008 + B1F2 SINE Alu 74 147 -2 5 1471 432 213 103 32 chr11 116210059 116210185 -5633671 - B1F1 SINE Alu -8 141 7 5 1471 261 231 60 71 chr11 116210189 116210273 -5633583 + ID_B1 SINE B4 131 213 -11 5 1471 571 213 63 172 chr11 116211878 116212099 -5631757 + B3A SINE B2 1 197 -1 5 1471 189 0 0 0 chr11 116212142 116212163 -5631693 + (TATG)n Simple_repeat Simple_repeat 2 22 0 5 1471 762 141 141 0 chr11 116212163 116212291 -5631565 - B1_Mus1 SINE Alu -2 146 1 5 1471 1224 68 0 0 chr11 116212307 116212454 -5631402 - B1_Mm SINE Alu 0 147 1 5 1471 401 265 37 0 chr11 116212459 116212571 -5631285 - PB1D7 SINE Alu -5 115 1 5 1471 213 333 53 21 chr11 116212571 116212607 -5631249 - B4A SINE B4 -208 84 46 5 1471 292 206 16 0 chr11 116212610 116212673 -5631183 - PB1D9 SINE Alu -54 66 3 5 1471 240 274 14 14 chr11 116212614 116212688 -5631168 - ID_B1 SINE B4 -81 143 70 5 1471 222 108 27 0 chr11 116212676 116212713 -5631143 - B3A SINE B2 -157 41 4 5 1471 432 0 0 0 chr11 116212718 116212766 -5631090 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1471 210 220 20 0 chr11 116212854 116212904 -5630952 - B2_Mm2 SINE B2 -142 53 3 5 1471 215 300 0 140 chr11 116212916 116213009 -5630847 - ID4_ SINE ID 0 83 4 5 1471 372 215 89 45 chr11 116213240 116213352 -5630504 - B1F1 SINE Alu -3 146 30 5 1471 1401 71 27 0 chr11 116213353 116213537 -5630319 - B2_Mm2 SINE B2 -6 189 1 5 1471 1070 92 14 0 chr11 116213538 116213679 -5630177 - B1_Mus1 SINE Alu -5 143 1 5 1471 606 149 89 16 chr11 116214039 116214162 -5629694 - B1_Mur2 SINE Alu -1 148 17 5 1471 293 185 56 100 chr11 116214095 116214185 -5629671 - MT2B LTR ERVL -361 240 155 5 1471 430 294 19 58 chr11 116214254 116214409 -5629447 + RSINE1 SINE B4 2 150 -15 5 1471 34 0 0 0 chr11 116214411 116214445 -5629411 + AT_rich Low_complexity Low_complexity 1 34 0 5 1471 281 319 0 0 chr11 116214575 116214647 -5629209 - ID4_ SINE ID -3 80 9 5 1471 659 178 30 30 chr11 116215021 116215154 -5628702 + B1_Mur2 SINE Alu 12 144 -5 5 1471 1178 162 66 0 chr11 116215158 116215356 -5628500 - B3 SINE B2 -5 211 1 5 1471 628 238 14 27 chr11 116215461 116215608 -5628248 + B1F2 SINE Alu 1 145 -4 5 1471 1151 144 108 0 chr11 116216265 116216460 -5627396 - B3 SINE B2 0 216 1 5 1471 236 259 0 0 chr11 116217198 116217252 -5626604 + ID SINE ID 2 55 -169 5 1471 744 233 7 0 chr11 116217412 116217558 -5626298 + B1F SINE Alu 1 147 -2 5 1471 1208 75 0 0 chr11 116217674 116217821 -5626035 - B1_Mus1 SINE Alu 0 148 2 5 1471 641 249 44 82 chr11 116217827 116218033 -5625823 - B3A SINE B2 0 198 1 5 1471 180 111 0 0 chr11 116218054 116218081 -5625775 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5 1471 1135 102 0 0 chr11 116218233 116218380 -5625476 - B1_Mus2 SINE Alu 0 147 1 5 1471 264 264 14 28 chr11 116218503 116218516 -5625340 + ORR1B1-int LTR MaLR 613 623 -886 5 1471 1225 48 7 0 chr11 116218516 116218661 -5625195 + B1_Mm SINE Alu 2 147 0 5 1471 264 264 14 28 chr11 116218661 116218685 -5625171 + ORR1B1-int LTR MaLR 624 648 -861 5 1471 845 62 0 0 chr11 116218685 116218797 -5625059 + B1_Mus1 SINE Alu 3 114 -34 5 1471 574 213 24 24 chr11 116218858 116218983 -5624873 - B1_Mur3 SINE Alu 0 149 25 5 1471 228 86 0 0 chr11 116219041 116219076 -5624780 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1471 872 181 0 14 chr11 116219076 116219217 -5624639 - B1_Mur3 SINE Alu -5 144 5 5 1471 638 227 14 0 chr11 116219247 116219388 -5624468 - B1F SINE Alu -1 148 6 5 1471 309 308 64 27 chr11 116219291 116219401 -5624455 - B4A SINE B4 -99 193 80 5 1471 471 63 0 0 chr11 116220660 116220723 -5623133 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1471 457 194 102 0 chr11 116221759 116221857 -5621999 - B1_Mus2 SINE Alu -1 146 39 5 1471 750 57 184 16 chr11 116221854 116221979 -5621877 - B2_Mm2 SINE B2 -49 146 1 5 1471 277 167 0 0 chr11 116221979 116222025 -5621831 - B1_Mur4 SINE Alu -96 54 9 5 1471 805 216 193 0 chr11 116222059 116222240 -5621616 + B3 SINE B2 1 216 0 5 1471 343 306 44 11 chr11 116223088 116223222 -5620634 - PB1D7 SINE Alu -15 132 1 5 1471 288 0 0 0 chr11 116223960 116223992 -5619864 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1471 348 43 0 0 chr11 116224695 116224741 -5619115 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1471 317 299 60 83 chr11 116224839 116225007 -5618849 + B4 SINE B4 54 217 -75 5 1471 795 146 28 35 chr11 116224879 116225021 -5618835 + B1_Mur3 SINE Alu 9 149 0 5 1471 716 179 63 56 chr11 116225025 116225167 -5618689 + B1_Mur1 SINE Alu 1 143 -6 5 1471 573 88 0 0 chr11 116225167 116225247 -5618609 + (GGGA)n Simple_repeat Simple_repeat 1 80 0 5 1471 459 168 150 63 chr11 116225335 116225462 -5618394 + B2_Mm2 SINE B2 3 140 -55 5 1471 230 360 70 0 chr11 116225493 116225607 -5618249 + ID_B1 SINE B4 102 223 -1 5 1471 313 183 34 79 chr11 116225603 116225692 -5618164 + MT2B LTR ERVL 155 239 -362 5 1471 647 159 28 17 chr11 116225615 116225764 -5618092 + B1_Mur2 SINE Alu 6 148 -1 5 1471 345 223 8 118 chr11 116226028 116226155 -5617701 - PB1D10 SINE Alu -3 114 2 5 1471 1089 76 21 0 chr11 116226178 116226323 -5617533 - B1_Mus1 SINE Alu 0 148 1 5 1471 722 231 42 7 chr11 116226380 116226524 -5617332 - RSINE1 SINE B4 -15 150 2 5 1471 420 229 36 45 chr11 116226528 116226638 -5617218 - PB1D10 SINE Alu 0 117 9 5 1471 369 117 0 0 chr11 116226659 116226719 -5617137 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1471 189 0 0 0 chr11 116226885 116226906 -5616950 + (TC)n Simple_repeat Simple_repeat 1 21 0 5 1471 352 229 0 0 chr11 116227049 116227119 -5616737 - L1M5 LINE L1 -456 5668 5599 5 1471 198 0 0 0 chr11 116227457 116227479 -5616377 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5 1471 465 153 26 10 chr11 116227479 116227578 -5616278 - PB1D9 SINE Alu -3 117 9 5 1471 750 173 71 7 chr11 116227611 116227751 -5616105 - B1_Mur4 SINE Alu -1 149 1 5 1471 338 198 24 30 chr11 116227836 116227986 -5615870 - B2_Mm2 SINE B2 -8 187 2 5 1471 760 111 68 0 chr11 116227986 116228103 -5615753 - B2_Mm1t SINE B2 -14 179 55 5 1471 535 313 96 68 chr11 116228224 116228286 -5615570 - B4A SINE B4 -2 290 229 5 1471 1225 62 0 0 chr11 116228286 116228431 -5615425 - B1_Mus1 SINE Alu -2 146 2 5 1471 561 273 186 10 chr11 116228431 116228649 -5615207 - B4 SINE B4 -52 240 2 5 1471 295 275 41 8 chr11 116228662 116228783 -5615073 - L1MB3 LINE L1 -1 6182 6058 5 1471 259 367 38 0 chr11 116228951 116229030 -5614826 + ID4 SINE ID 1 82 -1 5 1471 245 301 76 98 chr11 116229748 116229932 -5613924 + MT2B2 LTR ERVL 86 265 -319 5 1471 492 275 9 0 chr11 116229827 116229936 -5613920 + ID_B1 SINE B4 84 193 -31 5 1471 401 344 32 8 chr11 116229936 116229952 -5613904 + B1F1 SINE Alu 3 130 -19 5 1471 1564 43 21 0 chr11 116230057 116230244 -5613612 + B2_Mm1t SINE B2 2 192 -1 5 1471 668 257 117 67 chr11 116230265 116230444 -5613412 - B3A SINE B2 -7 188 1 5 1471 270 81 0 0 chr11 116230473 116230510 -5613346 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1471 733 233 11 31 chr11 116230704 116230893 -5612963 + B3 SINE B2 1 198 0 5 1471 310 102 14 14 chr11 116230985 116231055 -5612801 + (CAGG)n Simple_repeat Simple_repeat 2 71 0 5 1471 2262 139 72 21 chr11 116231123 116231541 -5612315 + BGLII_B LTR ERVK 1 439 -2 5 1471 186 143 0 0 chr11 116231569 116231604 -5612252 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 5 1471 645 230 0 16 chr11 116231700 116231828 -5612028 - B1_Mur2 SINE Alu -19 130 5 5 1471 201 175 0 0 chr11 116231828 116231868 -5611988 + CT-rich Low_complexity Low_complexity 3 42 0 5 1471 533 236 63 0 chr11 116231871 116231998 -5611858 - B1_Mur4 SINE Alu -15 135 1 5 1471 1043 109 0 0 chr11 116232256 116232393 -5611463 + B1_Mus2 SINE Alu 1 137 -10 5 1471 208 0 62 0 chr11 116232393 116232425 -5611431 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1471 545 223 115 0 chr11 116232436 116232566 -5611290 + ID_B1 SINE B4 79 223 -1 5 1471 1181 37 0 0 chr11 116233769 116233904 -5609952 + B1_Mus2 SINE Alu 2 136 -11 5 1471 477 0 0 0 chr11 116234008 116234061 -5609795 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1471 316 214 51 45 chr11 116234689 116234865 -5608991 + (CATA)n Simple_repeat Simple_repeat 2 178 0 5 1471 355 271 47 70 chr11 116235400 116235515 -5608341 + PB1D10 SINE Alu 8 116 -1 5 1471 501 245 34 40 chr11 116235588 116235737 -5608119 + RSINE1 SINE B4 3 150 -15 5 1471 260 245 170 0 chr11 116235951 116236045 -5607811 + L1MD3 LINE L1 7365 7474 -521 5 1471 1278 78 0 54 chr11 116236049 116236252 -5607604 + B2_Mm1a SINE B2 1 192 -1 5 1471 1242 34 7 0 chr11 116236462 116236608 -5607248 + B1_Mus2 SINE Alu 1 147 0 6 1471 660 190 9 0 chr11 116236694 116236810 -5607046 + PB1D9 SINE Alu 4 120 0 6 1471 978 122 50 0 chr11 116237183 116237322 -5606534 + B1_Mus1 SINE Alu 2 147 -1 6 1471 209 98 0 24 chr11 116237328 116237370 -5606486 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 6 1471 674 254 40 5 chr11 116237556 116237754 -5606102 + B3 SINE B2 2 206 -10 6 1471 1450 56 17 0 chr11 116237765 116237943 -5605913 + B2_Mm2 SINE B2 2 182 -13 6 1471 347 124 8 18 chr11 116237980 116238042 -5605814 + B2_Mm2 SINE B2 49 113 -103 6 1471 327 49 0 0 chr11 116238058 116238099 -5605757 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1471 369 232 58 0 chr11 116238368 116238437 -5605419 + PB1D10 SINE Alu 3 75 -42 6 1471 202 244 0 0 chr11 116238448 116238493 -5605363 + A-rich Low_complexity Low_complexity 1 45 0 6 1471 414 0 0 0 chr11 116238761 116238807 -5605049 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1471 434 232 17 51 chr11 116239012 116239130 -5604726 - B1F2 SINE Alu -6 143 30 6 1471 337 299 70 22 chr11 116239227 116239399 -5604457 + MIRc SINE MIR 32 218 -50 6 1471 24 53 0 0 chr11 116239524 116239562 -5604294 + AT_rich Low_complexity Low_complexity 1 38 0 6 1471 1055 93 0 14 chr11 116239566 116239707 -5604149 + B1_Mus1 SINE Alu 1 139 -9 6 1471 191 36 36 0 chr11 116239707 116239735 -5604121 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1471 512 286 0 0 chr11 116239916 116240028 -5603828 + PB1D9 SINE Alu 9 120 0 6 1471 455 188 165 19 chr11 116240033 116240136 -5603720 - MTD LTR MaLR 0 419 302 6 1471 304 242 14 15 chr11 116240142 116240223 -5603633 - MTB_Mm LTR MaLR -326 81 4 6 1471 931 172 21 0 chr11 116240687 116240832 -5603024 - B1_Mur3 SINE Alu 0 149 2 6 1471 1361 67 11 37 chr11 116241225 116241412 -5602444 - B2_Mm2 SINE B2 -11 184 3 6 1471 228 305 64 37 chr11 116241801 116241910 -5601946 + PB1D10 SINE Alu 6 117 0 6 1471 361 169 121 22 chr11 116242313 116242404 -5601452 + PB1D10 SINE Alu 17 116 -1 6 1471 330 247 12 36 chr11 116242466 116242481 -5601375 + ID SINE ID 72 84 -140 6 1471 312 271 0 105 chr11 116242481 116242576 -5601280 + PB1D10 SINE Alu 4 88 -29 6 1471 351 0 0 0 chr11 116242578 116242617 -5601239 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1471 1098 211 24 0 chr11 116243334 116243543 -5600313 + B3 SINE B2 1 214 -2 6 1471 270 0 0 0 chr11 116244567 116244597 -5599259 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1471 1154 62 7 0 chr11 116244610 116244756 -5599100 + B1_Mus1 SINE Alu 1 147 -1 6 1471 288 0 0 0 chr11 116244762 116244794 -5599062 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1471 666 247 11 62 chr11 116244794 116244971 -5598885 + B3A SINE B2 29 196 -2 6 1471 1263 54 0 0 chr11 116244981 116245128 -5598728 + B1_Mus2 SINE Alu 1 147 0 6 1471 418 290 0 36 chr11 116245150 116245261 -5598595 - PB1D7 SINE Alu -3 117 11 6 1471 214 230 89 89 chr11 116245890 116246014 -5597842 - MIR SINE MIR -23 239 116 6 1471 1392 68 17 0 chr11 116246014 116246190 -5597666 + B2_Mm2 SINE B2 1 179 -16 6 1471 234 0 0 0 chr11 116246190 116246216 -5597640 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 1471 372 43 0 0 chr11 116246216 116246262 -5597594 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 6 1471 1186 82 0 0 chr11 116246453 116246599 -5597257 - B1_Mus2 SINE Alu 0 147 2 6 1471 3024 65 29 0 chr11 116246644 116247029 -5596827 - MTA_Mm LTR MaLR 0 396 1 6 1471 897 150 190 22 chr11 116247089 116247273 -5596583 + B3 SINE B2 2 216 0 6 1471 222 174 0 0 chr11 116247301 116247347 -5596509 + GA-rich Low_complexity Low_complexity 3 48 0 6 1471 388 187 84 42 chr11 116247347 116247442 -5596414 + ID_B1 SINE B4 121 219 -5 6 1471 186 71 0 0 chr11 116248584 116248612 -5595244 + (G)n Simple_repeat Simple_repeat 1 28 0 6 1471 191 278 82 14 chr11 116249291 116249364 -5594492 + MIR SINE MIR 178 255 -7 6 1471 404 241 69 0 chr11 116249405 116249492 -5594364 - PB1D7 SINE Alu -1 119 27 6 1471 747 179 45 0 chr11 116249501 116249635 -5594221 - B1_Mur3 SINE Alu -1 148 9 6 1471 288 0 0 0 chr11 116249692 116249724 -5594132 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1471 1205 48 0 26 chr11 116249724 116249875 -5593981 - B1_Mus1 SINE Alu 0 148 2 6 1471 231 300 91 0 chr11 116249878 116249988 -5593868 - PB1D7 SINE Alu 0 120 1 6 1471 1324 41 71 0 chr11 116250015 116250184 -5593672 + B2_Mm2 SINE B2 1 181 -14 6 1471 235 290 0 0 chr11 116250471 116250533 -5593323 - B1F SINE Alu -33 116 55 6 1471 2317 75 18 72 chr11 116250718 116251106 -5592750 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1471 6733 92 111 72 chr11 116251106 116252364 -5591492 + IAPEz-int LTR ERVK 8 1313 -5168 6 1471 27890 23 1 1 chr11 116252362 116255631 -5588225 + IAPEz-int LTR ERVK 3209 6478 -3 6 1471 2317 75 18 72 chr11 116255635 116256023 -5587833 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1471 270 213 33 0 chr11 116256134 116256195 -5587661 + L2b LINE L2 3296 3358 -17 6 1471 349 295 139 0 chr11 116256635 116256764 -5587092 + B1_Mus2 SINE Alu 1 147 0 6 1471 633 211 27 12 chr11 116256771 116256902 -5586954 + B1_Mur2 SINE Alu 1 124 -23 6 1471 337 214 21 43 chr11 116257121 116257214 -5586642 - PB1D7 SINE Alu -17 103 10 6 1471 325 281 112 20 chr11 116257230 116257328 -5586528 - L2b LINE L2 0 3375 3269 6 1471 396 40 0 0 chr11 116257918 116257968 -5585888 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1471 623 217 168 0 chr11 116257992 116258153 -5585703 - B4 SINE B4 -96 196 9 6 1471 730 204 29 7 chr11 116258168 116258306 -5585550 - B1_Mur1 SINE Alu 0 149 9 6 1471 390 312 42 99 chr11 116258170 116258362 -5585494 - B4 SINE B4 -69 223 43 6 1471 338 278 0 100 chr11 116258320 116258420 -5585436 - PB1D10 SINE Alu -27 90 1 6 1471 431 224 48 30 chr11 116258639 116258747 -5585109 + PB1D10 SINE Alu 7 117 0 6 1471 896 190 17 73 chr11 116258778 116259011 -5584845 + URR1B DNA MER1_type 5 224 -1 6 1471 601 238 71 8 chr11 116259099 116259226 -5584630 - ID_B1 SINE B4 -4 220 86 6 1471 243 0 0 0 chr11 116260044 116260071 -5583785 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 6 1471 1162 55 0 0 chr11 116260284 116260430 -5583426 + B1_Mus2 SINE Alu 1 146 -1 6 1471 629 256 29 0 chr11 116260568 116260705 -5583151 - ID_B1 SINE B4 0 224 84 6 1471 498 187 17 86 chr11 116260743 116260860 -5582996 + PB1D9 SINE Alu 9 117 -3 6 1472 1742 16 0 0 chr11 116260866 116261059 -5582797 + B2_Mm1a SINE B2 1 193 0 6 1472 213 39 0 0 chr11 116261135 116261161 -5582695 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1472 1131 27 0 93 chr11 116261161 116261323 -5582533 - B1_Mus2 SINE Alu 0 147 1 6 1472 247 307 53 0 chr11 116261324 116261399 -5582457 + PB1D10 SINE Alu 39 117 0 6 1472 885 110 64 29 chr11 116261583 116261723 -5582133 + B1_Mur3 SINE Alu 5 149 0 6 1472 1197 68 7 0 chr11 116262360 116262506 -5581350 + B1_Mus2 SINE Alu 1 147 0 6 1472 181 28 0 100 chr11 116262506 116262546 -5581310 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 6 1472 234 357 14 0 chr11 116262995 116263065 -5580791 - MIRb SINE MIR -171 97 27 6 1472 835 257 23 19 chr11 116263256 116263470 -5580386 + B4A SINE B4 24 238 -54 6 1472 1133 101 50 11 chr11 116263590 116263770 -5580086 - B2_Mm2 SINE B2 -7 188 2 6 1472 669 330 28 42 chr11 116263805 116264017 -5579839 - B3 SINE B2 -6 210 2 6 1472 31 48 0 16 chr11 116264109 116264145 -5579711 + AT_rich Low_complexity Low_complexity 1 36 0 6 1472 242 324 108 0 chr11 116264145 116264219 -5579637 - ID4_ SINE ID 0 83 2 6 1472 31 48 0 16 chr11 116264219 116264245 -5579611 + AT_rich Low_complexity Low_complexity 1 26 0 6 1472 579 280 15 0 chr11 116264445 116264573 -5579283 - B1F1 SINE Alu 0 149 20 6 1472 1429 211 85 20 chr11 116264573 116264926 -5578930 + ORR1C1 LTR MaLR 1 376 -2 6 1472 380 253 89 19 chr11 116265068 116265225 -5578631 - L1M5 LINE L1 -562 5602 5435 6 1472 563 177 0 30 chr11 116265261 116265360 -5578496 - ID_B1 SINE B4 -11 213 118 6 1472 579 211 126 6 chr11 116265491 116265658 -5578198 - B3A SINE B2 -10 188 2 6 1472 357 146 0 21 chr11 116265714 116265816 -5578040 - B2_Mm2 SINE B2 -14 181 47 6 1472 1222 103 6 28 chr11 116265863 116266042 -5577814 - B2_Mm1t SINE B2 -14 179 5 6 1472 238 222 19 0 chr11 116266047 116266101 -5577755 + CT-rich Low_complexity Low_complexity 1 55 0 6 1472 726 105 31 64 chr11 116266102 116266245 -5577611 - B1_Mur4 SINE Alu -6 144 6 6 1472 505 257 63 58 chr11 116266259 116266449 -5577407 - B3A SINE B2 -1 197 7 6 1472 183 100 0 0 chr11 116266449 116266479 -5577377 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 6 1472 954 152 7 7 chr11 116266503 116266649 -5577207 - B1_Mur4 SINE Alu 0 150 5 6 1472 221 163 0 44 chr11 116266649 116266663 -5577193 + T-rich Low_complexity Low_complexity 31 43 0 6 1472 1192 82 0 0 chr11 116266663 116266810 -5577046 - B1_Mus1 SINE Alu -1 147 1 6 1472 221 163 0 44 chr11 116266810 116266840 -5577016 + T-rich Low_complexity Low_complexity 1 30 0 6 1472 251 331 22 11 chr11 116266951 116267027 -5576829 + ID_B1 SINE B4 73 153 -139 6 1472 727 180 16 63 chr11 116267027 116267223 -5576633 + B3 SINE B2 1 192 -3 6 1472 1103 70 28 14 chr11 116267225 116267370 -5576486 + B1_Mus2 SINE Alu 1 147 0 7 1472 490 238 143 32 chr11 116267572 116267789 -5576067 - L1MB7 LINE L1 -73 6111 5871 7 1472 269 261 123 26 chr11 116268070 116268184 -5575672 - B1F SINE Alu -9 140 16 7 1472 273 278 20 30 chr11 116268213 116268313 -5575543 - L1MB7 LINE L1 -651 5527 5429 7 1472 403 253 62 10 chr11 116268330 116268426 -5575430 - B1F SINE Alu -48 101 1 7 1472 286 193 80 0 chr11 116268426 116268514 -5575342 - L1MB7 LINE L1 -761 5419 5325 7 1472 439 185 219 6 chr11 116268514 116268666 -5575190 - B3 SINE B2 -2 193 1 7 1472 824 201 0 7 chr11 116268725 116268865 -5574991 - B1_Mus2 SINE Alu -8 139 1 7 1472 443 298 55 91 chr11 116268865 116268924 -5574932 - ID_B1 SINE B4 -8 216 25 7 1472 751 281 15 59 chr11 116269418 116269622 -5574234 - B3A SINE B2 0 198 4 7 1472 1230 41 7 0 chr11 116269644 116269790 -5574066 + B1_Mus2 SINE Alu 1 147 0 7 1472 788 271 37 16 chr11 116269943 116270134 -5573722 - B3 SINE B2 -14 202 8 7 1472 246 190 155 0 chr11 116270166 116270224 -5573632 + ID_B1 SINE B4 151 217 -7 6 1472 458 279 153 91 chr11 116270246 116270455 -5573401 + ID_B1 SINE B4 3 224 0 7 1472 240 284 0 0 chr11 116270538 116270605 -5573251 - L1M4 LINE L1 -2129 4017 3951 7 1472 1157 82 0 0 chr11 116270693 116270840 -5573016 - B1_Mus2 SINE Alu 0 147 1 7 1472 445 190 0 16 chr11 116270842 116270943 -5572913 - B1_Mus2 SINE Alu -1 146 23 7 1472 1375 69 40 0 chr11 116271189 116271362 -5572494 - B2_Mm2 SINE B2 -14 181 2 7 1472 617 197 0 13 chr11 116271573 116271680 -5572176 + polypurine Low_complexity Low_complexity 3 107 0 7 1472 1292 27 0 0 chr11 116271680 116271827 -5572029 + B1_Mm SINE Alu 1 147 0 7 1472 617 197 0 13 chr11 116271827 116271873 -5571983 + polypurine Low_complexity Low_complexity 108 153 0 7 1472 495 253 70 80 chr11 116271878 116272034 -5571822 + B3A SINE B2 9 163 -35 7 1472 274 231 0 15 chr11 116272122 116272188 -5571668 + ID_B1 SINE B4 156 220 -4 7 1472 252 267 15 77 chr11 116272308 116272373 -5571483 + B1F SINE Alu 1 61 -88 7 1472 792 156 41 34 chr11 116272514 116272660 -5571196 - B1_Mur3 SINE Alu -2 147 1 7 1472 221 250 0 0 chr11 116272692 116272736 -5571120 + B4 SINE B4 86 129 -163 7 1472 399 209 81 11 chr11 116272773 116272860 -5570996 - PB1D7 SINE Alu 0 120 28 7 1472 23 68 0 0 chr11 116273962 116274006 -5569850 + GC_rich Low_complexity Low_complexity 1 44 0 7 1472 27 73 0 0 chr11 116274145 116274200 -5569656 + GC_rich Low_complexity Low_complexity 1 55 0 7 1472 22 0 0 0 chr11 116274311 116274333 -5569523 + GC_rich Low_complexity Low_complexity 1 22 0 7 1472 23 33 0 0 chr11 116274398 116274428 -5569428 + GC_rich Low_complexity Low_complexity 1 30 0 7 1472 387 0 0 0 chr11 116275093 116275136 -5568720 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1472 450 0 0 0 chr11 116275372 116275422 -5568434 + (TTCTC)n Simple_repeat Simple_repeat 5 54 0 7 1472 351 0 0 0 chr11 116275441 116275480 -5568376 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1472 359 215 51 0 chr11 116275580 116275659 -5568197 - RSINE1 SINE B4 -38 127 45 7 1472 439 223 32 0 chr11 116275670 116275764 -5568092 - ID_B1 SINE B4 -10 214 118 7 1472 848 225 21 16 chr11 116276301 116276491 -5567365 + B3 SINE B2 1 191 -25 7 1472 926 162 0 0 chr11 116276497 116276633 -5567223 + B1_Mur1 SINE Alu 1 136 -13 7 1472 230 56 0 27 chr11 116276634 116276671 -5567185 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 7 1472 952 222 5 43 chr11 116277158 116277365 -5566491 - ID_B1 SINE B4 -19 205 7 7 1472 2391 131 99 14 chr11 116278428 116278871 -5564985 - RMER19B LTR ERVK -421 481 1 7 1472 598 231 37 7 chr11 116279174 116279309 -5564547 + B1F SINE Alu 1 139 -10 7 1472 344 301 80 0 chr11 116279369 116279482 -5564374 + RSINE1 SINE B4 44 165 0 7 1472 333 62 0 0 chr11 116279488 116279536 -5564320 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1472 743 228 58 15 chr11 116280387 116280592 -5563264 + B3 SINE B2 1 214 -2 7 1472 313 133 247 26 chr11 116280632 116280709 -5563147 + PB1D10 SINE Alu 19 112 -5 7 1472 318 200 43 96 chr11 116280749 116280843 -5563013 + ID_B1 SINE B4 123 211 -13 7 1472 1065 68 0 27 chr11 116280866 116281016 -5562840 + B2_Mm2 SINE B2 1 146 -49 7 1472 369 0 0 0 chr11 116281016 116281057 -5562799 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1472 212 162 0 0 chr11 116281061 116281098 -5562758 - PB1D10 SINE Alu -36 81 45 7 1472 387 0 0 0 chr11 116281101 116281144 -5562712 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1472 921 255 81 23 chr11 116281154 116281415 -5562441 + B4 SINE B4 13 288 -4 7 1472 469 296 19 31 chr11 116281894 116282058 -5561798 + ID_B1 SINE B4 72 226 -66 7 1472 1643 142 67 2 chr11 116282829 116283198 -5560658 + RLTR28 LTR ERVL 2 498 -26 7 1472 276 100 0 0 chr11 116283266 116283306 -5560550 + (TCC)n Simple_repeat Simple_repeat 1 40 0 7 1472 301 111 330 18 chr11 116283306 116283415 -5560441 - B2_Mm2 SINE B2 -6 189 47 7 1472 220 208 51 13 chr11 116283418 116283496 -5560360 + (CTCTG)n Simple_repeat Simple_repeat 1 81 0 7 1472 1176 136 11 6 chr11 116283500 116283678 -5560178 - B2_Mm1t SINE B2 -14 179 1 7 1472 489 136 124 19 chr11 116283987 116284092 -5559764 - PB1D9 SINE Alu -2 118 3 7 1472 2162 114 105 29 chr11 116284151 116284531 -5559325 + RLTR9E LTR ERVK 1 409 0 7 1472 1446 205 131 3 chr11 116284547 116284884 -5558972 - MTD LTR MaLR -39 380 1 7 1472 317 237 13 0 chr11 116284884 116284960 -5558896 - ID_B1 SINE B4 -31 193 117 7 1472 286 234 168 11 chr11 116285040 116285135 -5558721 - PB1D7 SINE Alu -2 118 9 7 1472 535 221 14 58 chr11 116285797 116285936 -5557920 - B1F SINE Alu 0 149 17 7 1472 227 246 115 0 chr11 116285887 116285948 -5557908 - B4A SINE B4 -142 150 83 7 1472 277 206 22 0 chr11 116285958 116286050 -5557806 + CT-rich Low_complexity Low_complexity 1 94 0 7 1472 214 170 55 36 chr11 116286285 116286340 -5557516 + B1_Mur4 SINE Alu 95 150 0 7 1472 22 56 0 0 chr11 116286403 116286439 -5557417 + AT_rich Low_complexity Low_complexity 1 36 0 7 1472 1160 197 258 0 chr11 116286511 116286806 -5557050 + ORR1D1 LTR MaLR 4 374 0 7 1472 375 262 21 135 chr11 116286855 116286896 -5556960 + B1F SINE Alu 17 45 -104 7 1472 1043 54 46 0 chr11 116286896 116287026 -5556830 + B1_Mus1 SINE Alu 1 136 -12 7 1472 333 0 0 0 chr11 116287029 116287066 -5556790 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1472 375 262 21 135 chr11 116287066 116287161 -5556695 + B1F SINE Alu 46 141 -8 7 1472 524 264 62 8 chr11 116287195 116287325 -5556531 + ID_B1 SINE B4 84 220 -4 7 1472 201 74 0 0 chr11 116287325 116287352 -5556504 + (CTAG)n Simple_repeat Simple_repeat 1 27 0 7 1472 1257 54 0 0 chr11 116287498 116287645 -5556211 - B1_Mus2 SINE Alu 0 147 1 7 1472 1472 70 16 0 chr11 116287876 116288062 -5555794 + B2_Mm2 SINE B2 2 190 -5 7 1472 216 0 0 0 chr11 116288097 116288121 -5555735 + (CCCTAA)n Simple_repeat Simple_repeat 5 28 0 7 1472 260 176 20 0 chr11 116288131 116288182 -5555674 - MER58A DNA MER1_type -128 96 45 7 1472 710 170 7 34 chr11 116288565 116288711 -5555145 - B1_Mur4 SINE Alu 0 150 9 7 1472 548 237 24 70 chr11 116288711 116288778 -5555078 - ID_B1 SINE B4 0 224 22 7 1472 459 52 0 0 chr11 116288966 116289024 -5554832 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1472 204 125 0 0 chr11 116289135 116289167 -5554689 + (TCC)n Simple_repeat Simple_repeat 2 33 0 7 1472 839 156 0 7 chr11 116289170 116289312 -5554544 - B1_Mus1 SINE Alu -2 146 6 7 1472 1195 56 0 0 chr11 116289374 116289516 -5554340 + B1_Mus1 SINE Alu 2 143 -5 7 1472 279 0 0 0 chr11 116289520 116289551 -5554305 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1472 794 250 39 39 chr11 116289568 116289772 -5554084 + B3 SINE B2 10 213 -3 7 1472 295 282 39 79 chr11 116289764 116289891 -5553965 + MT2B LTR ERVL 143 264 -337 7 1472 700 142 0 9 chr11 116289813 116289927 -5553929 + B1_Mur4 SINE Alu 38 150 0 7 1472 523 213 0 36 chr11 116290115 116290227 -5553629 - PB1D10 SINE Alu -9 108 1 7 1472 338 156 0 45 chr11 116291292 116291359 -5552497 + B1_Mur2 SINE Alu 85 148 -1 7 1472 183 100 0 0 chr11 116291359 116291389 -5552467 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 7 1472 393 22 0 0 chr11 116291493 116291539 -5552317 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 7 1472 350 252 168 0 chr11 116291783 116291795 -5552061 + B1_Mus1 SINE Alu 9 147 -1 7 1472 455 179 140 9 chr11 116291795 116291902 -5551954 + ID_B1 SINE B4 102 222 -2 7 1472 330 244 26 67 chr11 116292978 116293095 -5550761 - PB1D10 SINE Alu 0 117 10 7 1472 592 274 68 54 chr11 116293393 116293679 -5550177 + MER2 DNA MER2_type 27 315 -30 7 1472 310 312 25 0 chr11 116294035 116294115 -5549741 + RSINE1 SINE B4 12 93 -72 7 1472 213 316 58 78 chr11 116294115 116294136 -5549720 + B3A SINE B2 11 109 -89 7 1472 537 330 46 19 chr11 116294288 116294551 -5549305 - MER2 DNA MER2_type -4 341 72 7 1472 468 0 0 0 chr11 116294636 116294688 -5549168 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1472 652 169 0 91 chr11 116294692 116294835 -5549021 - B1_Mus2 SINE Alu -17 130 1 7 1472 246 32 0 0 chr11 116294836 116294867 -5548989 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 7 1472 228 211 39 26 chr11 116295751 116295829 -5548027 + G-rich Low_complexity Low_complexity 3 81 0 7 1472 252 0 0 0 chr11 116296335 116296363 -5547493 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1472 207 0 0 0 chr11 116296410 116296433 -5547423 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1472 1065 29 7 0 chr11 116296973 116297113 -5546743 + B1_Mus2 SINE Alu 7 147 0 8 1472 387 92 0 0 chr11 116297479 116297544 -5546312 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1472 414 241 0 0 chr11 116297726 116297813 -5546043 + PB1D7 SINE Alu 31 117 -3 8 1472 26 50 0 0 chr11 116299829 116299869 -5543987 + AT_rich Low_complexity Low_complexity 1 40 0 8 1472 277 190 37 70 chr11 116301551 116301663 -5542193 - PB1D10 SINE Alu -5 115 10 8 1472 1157 76 7 0 chr11 116302440 116302585 -5541271 - B1_Mus1 SINE Alu -1 147 2 8 1472 192 200 0 0 chr11 116304332 116304392 -5539464 + (CTG)n Simple_repeat Simple_repeat 1 60 0 8 1472 374 311 0 56 chr11 116305286 116305301 -5538555 + ID_B1 SINE B4 72 217 -2 8 1472 539 222 14 36 chr11 116305301 116305441 -5538415 + B1F1 SINE Alu 6 142 -7 8 1472 304 171 0 73 chr11 116305570 116305652 -5538204 + PB1D10 SINE Alu 12 87 -30 8 1472 417 95 0 0 chr11 116306056 116306119 -5537737 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1472 237 188 0 40 chr11 116306132 116306182 -5537674 + C-rich Low_complexity Low_complexity 3 50 0 8 1472 217 222 0 0 chr11 116306848 116306893 -5536963 + C-rich Low_complexity Low_complexity 1 45 0 8 1472 409 281 0 59 chr11 116308861 116308963 -5534893 + RSINE1 SINE B4 70 165 0 8 1472 240 221 20 122 chr11 116308901 116308999 -5534857 + B3 SINE B2 125 212 -4 8 1472 234 0 0 0 chr11 116310975 116311001 -5532855 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1472 3092 134 143 26 chr11 116311158 116311466 -5532390 + RMER6D LTR ERVK 1 365 -355 8 1472 1256 228 199 78 chr11 116311466 116311913 -5531943 + RLTR16 LTR ERVK 1 501 -4 8 1472 249 43 64 0 chr11 116311923 116311970 -5531886 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1472 3092 134 143 26 chr11 116311970 116312295 -5531561 + RMER6D LTR ERVK 370 720 0 8 1472 294 280 71 0 chr11 116312403 116312510 -5531346 + L1M4 LINE L1 5344 5457 -726 8 1472 624 247 42 85 chr11 116312535 116312747 -5531109 + B3 SINE B2 1 203 -13 8 1472 484 209 11 17 chr11 116312753 116312933 -5530923 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1472 540 189 20 0 chr11 116312951 116313099 -5530757 + (CA)n Simple_repeat Simple_repeat 2 152 0 8 1472 249 258 289 1 chr11 116313262 116313374 -5530482 + L1M4 LINE L1 5631 5770 -401 8 1472 636 228 137 32 chr11 116313428 116313618 -5530238 + B3 SINE B2 2 211 -5 8 1472 582 244 77 16 chr11 116313626 116313809 -5530047 + B3A SINE B2 4 197 -1 8 1472 423 0 0 0 chr11 116314024 116314071 -5529785 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1472 383 156 35 60 chr11 116314080 116314196 -5529660 + Lx9 LINE L1 7532 7644 0 8 1472 208 91 0 43 chr11 116314215 116314261 -5529595 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1472 772 163 0 8 chr11 116314261 116314391 -5529465 - B1_Mus2 SINE Alu -1 146 18 8 1472 305 146 0 18 chr11 116314688 116314744 -5529112 + ORR1D2 LTR MaLR 310 364 -6 8 1472 487 316 0 0 chr11 116317678 116317846 -5526010 + (CATGC)n Simple_repeat Simple_repeat 5 172 0 8 1472 244 416 0 0 chr11 116318143 116318321 -5525535 + (GACTG)n Simple_repeat Simple_repeat 3 180 0 8 1472 280 421 0 0 chr11 116318574 116318738 -5525118 + (GGCTG)n Simple_repeat Simple_repeat 1 164 0 8 1472 202 441 0 0 chr11 116318784 116318961 -5524895 + (GACTG)n Simple_repeat Simple_repeat 3 179 0 8 1472 252 329 0 0 chr11 116318788 116318858 -5524998 + (GGCTG)n Simple_repeat Simple_repeat 1 70 0 8 1472 194 227 13 0 chr11 116320607 116320682 -5523174 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1472 236 30 30 0 chr11 116320681 116320714 -5523142 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 1472 213 298 200 9 chr11 116320798 116320903 -5522953 - ID_B1 SINE B4 -2 222 98 8 1472 180 0 0 0 chr11 116320909 116320929 -5522927 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1472 343 242 48 57 chr11 116320932 116321037 -5522819 - PB1D10 SINE Alu -9 108 5 8 1472 703 229 40 6 chr11 116320945 116321121 -5522735 - ID_B1 SINE B4 -42 182 1 8 1472 400 284 75 56 chr11 116321166 116321379 -5522477 - MLT1D LTR MaLR -266 239 23 8 1472 532 280 32 26 chr11 116321569 116321723 -5522133 + RSINE1 SINE B4 11 165 0 8 1472 189 0 0 0 chr11 116322063 116322084 -5521772 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1472 408 284 19 45 chr11 116322089 116322244 -5521612 - B4A SINE B4 -18 274 124 8 1472 210 37 0 0 chr11 116322289 116322316 -5521540 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1472 1105 39 0 0 chr11 116322323 116322451 -5521405 - B1_Mus1 SINE Alu -19 129 2 8 1472 360 0 0 0 chr11 116323484 116323524 -5520332 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1472 262 0 0 50 chr11 116323638 116323678 -5520178 + (TTA)n Simple_repeat Simple_repeat 2 39 0 8 1472 1203 54 0 26 chr11 116323687 116323838 -5520018 - B1_Mus1 SINE Alu 0 148 2 8 1472 198 0 0 0 chr11 116323866 116323888 -5519968 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 8 1472 704 80 0 0 chr11 116324025 116324125 -5519731 - B2_Mm2 SINE B2 -95 100 1 8 1472 455 248 21 49 chr11 116324208 116324352 -5519504 + ID_B1 SINE B4 80 219 -5 8 1472 405 0 0 0 chr11 116324982 116325027 -5518829 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1472 226 343 16 93 chr11 116325368 116325438 -5518418 - B4A SINE B4 -37 255 87 8 1472 282 330 35 35 chr11 116325438 116325551 -5518305 - B1F2 SINE Alu -35 114 2 8 1472 1099 86 0 0 chr11 116325604 116325743 -5518113 + B1_Mus1 SINE Alu 1 139 -9 8 1472 1143 164 257 11 chr11 116325757 116326041 -5517815 + ORR1C1 LTR MaLR 13 366 -12 8 1472 865 163 28 7 chr11 116326058 116326200 -5517656 - B1_Mur1 SINE Alu -2 147 3 8 1472 643 230 56 6 chr11 116326322 116326484 -5517372 + B3 SINE B2 1 170 -46 8 1472 207 69 0 0 chr11 116326485 116326514 -5517342 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1472 1197 74 0 0 chr11 116328119 116328267 -5515589 - B1_Mus1 SINE Alu 0 148 1 8 1472 1298 84 33 27 chr11 116328267 116328450 -5515406 - B2_Mm2 SINE B2 -9 186 2 8 1472 367 64 192 0 chr11 116328468 116328546 -5515310 - L1_Mus3 LINE L1 -2 6636 6544 8 1472 822 120 285 22 chr11 116328650 116328829 -5515027 + URR1A DNA MER1_type 1 226 0 8 1472 1074 76 152 6 chr11 116328847 116329005 -5514851 + B2_Mm2 SINE B2 1 181 -14 8 1472 862 101 22 0 chr11 116329005 116329144 -5514712 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 8 1472 546 142 29 29 chr11 116329243 116329345 -5514511 - B1_Mus2 SINE Alu -3 144 43 8 1472 235 281 271 18 chr11 116329338 116329508 -5514348 - B3 SINE B2 0 216 4 8 1472 294 95 0 0 chr11 116329647 116329689 -5514167 + (CATA)n Simple_repeat Simple_repeat 2 43 0 8 1472 1306 96 0 17 chr11 116329691 116329871 -5513985 - B2_Mm2 SINE B2 -18 177 1 8 1472 270 0 0 0 chr11 116329880 116329910 -5513946 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1472 865 61 123 51 chr11 116329910 116330048 -5513808 - B1_Mus1 SINE Alu 0 148 1 8 1472 1204 62 0 0 chr11 116330113 116330257 -5513599 - B1_Mm SINE Alu -3 144 1 8 1472 262 196 0 35 chr11 116330559 116330617 -5513239 - B4 SINE B4 -147 145 90 8 1472 485 265 7 22 chr11 116330732 116330747 -5513109 + ID_B1 SINE B4 79 211 -13 8 1472 768 125 17 0 chr11 116330747 116330867 -5512989 + B1_Mus2 SINE Alu 13 134 -13 8 1472 207 0 0 0 chr11 116330867 116330890 -5512966 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1472 398 109 0 5 chr11 116330908 116330973 -5512883 - B2_Mm2 SINE B2 -107 109 47 8 1472 1152 96 102 0 chr11 116330983 116331149 -5512707 - B2_Mm2 SINE B2 -11 184 2 8 1472 290 262 114 19 chr11 116331197 116331302 -5512554 + B4A SINE B4 5 119 -173 8 1472 198 0 0 0 chr11 116331304 116331326 -5512530 + (CAGC)n Simple_repeat Simple_repeat 1 22 0 8 1472 345 253 0 25 chr11 116331898 116331979 -5511877 + ID4_ SINE ID 1 79 -4 8 1472 303 206 88 0 chr11 116333013 116333081 -5510775 - ID4_ SINE ID -7 76 3 8 1472 671 251 66 0 chr11 116334560 116334727 -5509129 + B3 SINE B2 37 214 -2 8 1472 1019 56 20 27 chr11 116335141 116335289 -5508567 - B1_Mus1 SINE Alu 0 148 2 8 1472 252 0 0 0 chr11 116335942 116335970 -5507886 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 8 1472 1520 37 21 0 chr11 116336040 116336228 -5507628 + B2_Mm1t SINE B2 2 193 0 8 1472 695 242 24 48 chr11 116336291 116336499 -5507357 + ID_B1 SINE B4 2 204 -20 8 1472 389 243 56 0 chr11 116336597 116336704 -5507152 + PB1D10 SINE Alu 1 113 -4 8 1472 750 88 53 0 chr11 116336845 116336958 -5506898 + PB1D9 SINE Alu 2 120 0 8 1472 368 250 226 0 chr11 116336998 116337122 -5506734 + B3A SINE B2 3 154 -44 8 1472 633 288 89 16 chr11 116337348 116337669 -5506187 + L1MC4 LINE L1 7289 7678 -364 8 1472 751 300 23 18 chr11 116338921 116339138 -5504718 + ID_B1 SINE B4 3 220 -4 8 1472 1111 22 0 0 chr11 116341774 116341908 -5501948 + B1_Mus2 SINE Alu 3 136 -11 8 1472 279 0 0 0 chr11 116341909 116341940 -5501916 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1472 611 122 100 27 chr11 116341955 116342065 -5501791 + PB1D9 SINE Alu 3 120 0 8 1472 247 246 17 34 chr11 116342097 116342156 -5501700 + B3A SINE B2 16 73 -125 8 1472 626 231 41 20 chr11 116343020 116343166 -5500690 + B1_Mur2 SINE Alu 1 149 0 8 1472 557 223 147 11 chr11 116343755 116343945 -5499911 - B3 SINE B2 0 216 1 8 1472 428 300 9 9 chr11 116344130 116344241 -5499615 + RSINE1 SINE B4 46 156 -9 9 1472 1147 48 0 0 chr11 116344275 116344422 -5499434 + B1_Mus2 SINE Alu 1 147 0 9 1472 228 67 0 0 chr11 116344422 116344452 -5499404 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1472 1104 69 36 0 chr11 116344458 116344630 -5499226 + B2_Mm1t SINE B2 1 190 -3 9 1472 21 36 0 0 chr11 116345136 116345164 -5498692 + AT_rich Low_complexity Low_complexity 1 28 0 9 1472 421 132 0 0 chr11 116345204 116345272 -5498584 + RLTR16 LTR ERVK 1 68 -437 9 1472 198 191 0 0 chr11 116345364 116345406 -5498450 + GA-rich Low_complexity Low_complexity 2 43 0 9 1472 964 226 36 162 chr11 116345407 116345846 -5498010 + RLTR16 LTR ERVK 118 501 -4 9 1472 550 123 64 36 chr11 116345838 116345856 -5498000 - B3 SINE B2 -102 114 94 9 1472 3526 103 181 28 chr11 116345856 116346495 -5497361 + RMER19A LTR ERVK 1 737 0 9 1472 550 123 64 36 chr11 116346495 116346586 -5497270 - B3 SINE B2 -123 93 2 9 1472 400 241 46 78 chr11 116346841 116346994 -5496862 - B1_Mur3 SINE Alu 0 149 2 9 1472 257 256 12 47 chr11 116347634 116347720 -5496136 + B2_Mm2 SINE B2 109 191 -4 9 1472 1591 108 73 50 chr11 116347733 116348036 -5495820 - MTB_Mm LTR MaLR 0 407 98 9 1472 1198 20 0 26 chr11 116348053 116348204 -5495652 - B1_Mus1 SINE Alu 0 148 2 9 1472 204 67 0 0 chr11 116348361 116348391 -5495465 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1472 1085 47 0 33 chr11 116348704 116348857 -5494999 + B1_Mus1 SINE Alu 1 148 0 9 1472 213 294 0 0 chr11 116348870 116348921 -5494935 + B1F1 SINE Alu 1 51 -98 9 1472 424 281 0 10 chr11 116348926 116349030 -5494826 + RSINE1 SINE B4 3 105 -60 9 1472 803 57 0 0 chr11 116349058 116349164 -5494692 + B2_Mm2 SINE B2 2 107 -88 9 1472 264 252 118 0 chr11 116349272 116349365 -5494491 + PB1D10 SINE Alu 2 104 -16 9 1472 547 220 7 8 chr11 116349518 116349661 -5494195 + B1F1 SINE Alu 10 149 0 9 1472 408 200 56 0 chr11 116349663 116349753 -5494103 + B1_Mur3 SINE Alu 1 95 -54 9 1472 1265 58 11 28 chr11 116349795 116349973 -5493883 - B2_Mm2 SINE B2 -19 176 2 9 1472 903 148 68 47 chr11 116350099 116350290 -5493566 + B2_Mm2 SINE B2 1 195 0 9 1472 281 278 19 85 chr11 116350562 116350668 -5493188 + B1_Mur1 SINE Alu 44 142 -7 9 1472 21 0 0 0 chr11 116350906 116350927 -5492929 + AT_rich Low_complexity Low_complexity 1 21 0 9 1472 307 0 0 44 chr11 116352656 116352701 -5491155 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 9 1472 650 56 0 0 chr11 116352704 116352793 -5491063 - B1_Mus2 SINE Alu -7 140 52 9 1472 252 188 68 55 chr11 116352740 116352813 -5491043 - RLTR25B LTR ERVK -519 509 436 9 1472 635 166 172 0 chr11 116352808 116352953 -5490903 - B3 SINE B2 -40 176 7 9 1472 787 119 0 0 chr11 116353305 116353423 -5490433 + RLTR33 LTR ERVK 561 678 0 9 1472 239 132 0 0 chr11 116353587 116353625 -5490231 + RMER19B LTR ERVK 1 38 -864 9 1472 1011 115 0 13 chr11 116353626 116353785 -5490071 + RMER19B LTR ERVK 741 897 -5 9 1472 684 155 14 7 chr11 116354361 116354504 -5489352 + CT-rich Low_complexity Low_complexity 1 144 0 9 1472 686 256 12 18 chr11 116354539 116354706 -5489150 - ID_B1 SINE B4 -52 172 7 9 1472 180 111 0 0 chr11 116354844 116354871 -5488985 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 9 1472 597 184 71 35 chr11 116355037 116355178 -5488678 + B1_Mus1 SINE Alu 2 147 -1 9 1472 293 291 171 33 chr11 116355395 116355576 -5488280 + MLT1A LTR MaLR 1 206 -168 9 1472 360 0 0 0 chr11 116355598 116355638 -5488218 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1472 349 321 4 48 chr11 116355676 116355706 -5488150 + ID_B1 SINE B4 57 90 -202 9 1472 532 269 0 0 chr11 116355706 116355814 -5488042 + PB1D9 SINE Alu 2 109 -11 9 1472 414 268 36 0 chr11 116355834 116355946 -5487910 - RSINE1 SINE B4 -39 126 11 9 1472 284 209 110 55 chr11 116356912 116357003 -5486853 + MT2B LTR ERVL 169 264 -337 9 1472 658 121 0 0 chr11 116356932 116357031 -5486825 + B1_Mus2 SINE Alu 42 140 -7 9 1472 1565 42 0 0 chr11 116357037 116357229 -5486627 + B2_Mm1a SINE B2 2 193 0 9 1472 531 43 0 0 chr11 116357294 116357364 -5486492 + (TC)n Simple_repeat Simple_repeat 1 70 0 9 1472 1090 38 0 0 chr11 116357613 116357746 -5486110 - B1_Mus2 SINE Alu -12 135 3 9 1472 367 236 0 0 chr11 116357768 116357840 -5486016 + MTE2b LTR MaLR 50 121 -258 9 1472 404 256 74 70 chr11 116357928 116358112 -5485744 - B3 SINE B2 -1 215 10 9 1472 271 261 106 32 chr11 116358139 116358260 -5485596 + MTE2b LTR MaLR 111 240 -139 9 1472 2102 123 92 60 chr11 116358260 116358294 -5485562 + RMER4B LTR ERVK 1 34 -551 9 1472 315 0 0 0 chr11 116358294 116358329 -5485527 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1472 1191 48 0 0 chr11 116358329 116358476 -5485380 + B1_Mm SINE Alu 1 147 0 9 1472 2102 135 88 62 chr11 116358476 116358912 -5484944 + RMER4B LTR ERVK 35 465 -1 9 1472 1613 16 0 10 chr11 116359072 116359267 -5484589 + B2_Mm1a SINE B2 1 193 0 9 1472 1101 104 6 0 chr11 116359272 116359435 -5484421 + B2_Mm1t SINE B2 23 186 -7 9 1472 752 80 2 1 chr11 116359443 116359558 -5484298 + B1_Mus2 SINE Alu 21 136 -13 9 1472 285 29 0 0 chr11 116359560 116359594 -5484262 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1472 730 145 65 0 chr11 116359600 116359724 -5484132 - B3 SINE B2 -36 180 49 9 1472 283 0 0 44 chr11 116359743 116359788 -5484068 - B2_Mm2 SINE B2 -16 179 137 9 1472 198 71 0 0 chr11 116360497 116360525 -5483331 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1472 636 144 143 8 chr11 116360525 116360651 -5483205 - B2_Mm2 SINE B2 -51 144 2 9 1472 270 0 0 0 chr11 116360963 116360993 -5482863 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1472 500 218 0 56 chr11 116360995 116361121 -5482735 - ID_B1 SINE B4 -16 208 90 9 1472 580 49 0 8 chr11 116361114 116361208 -5482648 + B1_Mus2 SINE Alu 31 147 0 9 1472 227 29 0 54 chr11 116361217 116361254 -5482602 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 1472 256 98 16 32 chr11 116361249 116361312 -5482544 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 9 1472 350 306 0 100 chr11 116361876 116362036 -5481820 - B4A SINE B4 -147 145 2 9 1472 506 240 19 88 chr11 116362196 116362356 -5481500 + B1F SINE Alu 1 149 0 9 1472 528 225 152 0 chr11 116362817 116362955 -5480901 - B3 SINE B2 -24 192 34 9 1472 200 111 0 27 chr11 116363103 116363140 -5480716 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 9 1472 25 31 0 0 chr11 116363183 116363215 -5480641 + AT_rich Low_complexity Low_complexity 1 32 0 9 1472 324 146 0 18 chr11 116363237 116363293 -5480563 - B2_Mm2 SINE B2 -94 101 47 9 1472 1137 109 6 6 chr11 116363304 116363479 -5480377 - B2_Mm2 SINE B2 -20 175 1 9 1472 405 158 92 0 chr11 116363515 116363591 -5480265 + MT2A LTR ERVL 1 83 -450 9 1472 583 245 179 0 chr11 116363565 116363761 -5480095 + MT2A LTR ERVL 232 462 -71 9 1472 285 251 27 3 chr11 116363774 116363849 -5480007 - PB1 SINE Alu -51 76 2 9 1472 432 37 0 0 chr11 116363849 116363903 -5479953 + (TTCC)n Simple_repeat Simple_repeat 2 55 0 9 1472 472 170 34 154 chr11 116363930 116364126 -5479730 - B1_Mur2 SINE Alu 0 150 1 9 1472 1078 68 14 0 chr11 116364153 116364299 -5479557 + B1_Mus1 SINE Alu 1 148 0 9 1472 458 254 0 82 chr11 116364343 116364489 -5479367 - B1F1 SINE Alu -13 136 3 9 1472 705 271 69 9 chr11 116364525 116364741 -5479115 + MLT2D LTR ERVL 3 231 -183 9 1472 198 0 0 0 chr11 116364861 116364883 -5478973 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1472 862 154 0 32 chr11 116364929 116365083 -5478773 - B1_Mur4 SINE Alu -1 149 1 9 1472 483 266 71 38 chr11 116365090 116365274 -5478582 - B3 SINE B2 0 216 27 9 1472 291 122 0 0 chr11 116365274 116365323 -5478533 + (T)n Simple_repeat Simple_repeat 1 49 0 9 1472 1177 40 0 13 chr11 116365323 116365473 -5478383 - B1_Mus1 SINE Alu 0 148 1 9 1472 254 163 0 0 chr11 116365473 116365516 -5478340 - B3A SINE B2 -155 43 1 9 1472 742 278 57 57 chr11 116365556 116365781 -5478075 + B4 SINE B4 2 226 -66 9 1472 240 103 0 0 chr11 116365781 116365820 -5478036 + B3 SINE B2 2 40 -176 9 1472 800 218 12 49 chr11 116366172 116366386 -5477470 + B3 SINE B2 12 216 0 9 1472 252 0 0 0 chr11 116366433 116366461 -5477395 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1472 1243 69 0 6 chr11 116366538 116366712 -5477144 + B2_Mm2 SINE B2 9 181 -14 9 1472 1131 57 0 0 chr11 116366739 116366879 -5476977 + B1_Mus1 SINE Alu 2 141 -7 9 1472 222 153 32 48 chr11 116367232 116367294 -5476562 - ID4 SINE ID 0 83 23 9 1472 29 0 0 0 chr11 116368234 116368263 -5475593 + AT_rich Low_complexity Low_complexity 1 29 0 9 1472 504 138 15 0 chr11 116368386 116368476 -5475380 + PB1D9 SINE Alu 38 120 0 9 1472 804 138 20 40 chr11 116368493 116368634 -5475222 + B1_Mur4 SINE Alu 2 142 -8 9 1472 207 0 0 0 chr11 116368634 116368657 -5475199 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1472 21 0 0 0 chr11 116368667 116368688 -5475168 + AT_rich Low_complexity Low_complexity 1 21 0 9 1472 351 0 0 0 chr11 116368857 116368896 -5474960 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1472 1105 43 0 7 chr11 116368896 116369035 -5474821 - B1_Mus1 SINE Alu -10 138 1 9 1472 296 229 108 0 chr11 116369635 116369718 -5474138 + MER20 DNA MER1_type 54 145 -74 9 1472 300 19 57 19 chr11 116369727 116369780 -5474076 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 9 1472 1086 59 0 0 chr11 116369780 116369916 -5473940 - B1_Mus2 SINE Alu -10 137 2 9 1472 486 0 0 0 chr11 116370296 116370350 -5473506 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1472 264 59 0 0 chr11 116370431 116370465 -5473391 + (TCTCCC)n Simple_repeat Simple_repeat 2 35 0 1 1472 1133 62 0 0 chr11 116370534 116370678 -5473178 + B1_Mus2 SINE Alu 2 145 -2 1 1472 263 308 12 37 chr11 116370700 116370781 -5473075 + B4 SINE B4 2 80 -212 1 1472 342 162 0 0 chr11 116370783 116370857 -5472999 + GA-rich Low_complexity Low_complexity 1 74 0 1 1472 3481 53 51 0 chr11 116370932 116371384 -5472472 - MT2C_Mm LTR ERVL 0 475 1 1 1472 301 0 0 0 chr11 116371384 116371422 -5472434 - MERVL-int LTR ERVL 0 5485 5448 1 1472 248 159 68 55 chr11 116371422 116371495 -5472361 - MTA_Mm-int LTR MaLR -1323 640 567 1 1472 2544 128 82 16 chr11 116371495 116371948 -5471908 - MERVL_2A-int LTR ERVL -132 5629 5147 1 1472 1181 112 48 19 chr11 116371948 116372158 -5471698 - MTA_Mm-int LTR MaLR -882 216 1 1 1472 1448 37 16 0 chr11 116372158 116372347 -5471509 - MTA_Mm LTR MaLR 0 396 205 1 1472 847 69 9 0 chr11 116372336 116372452 -5471404 + MTA_Mm LTR MaLR 280 396 0 1 1472 534 278 8 0 chr11 116372452 116372578 -5471278 + B4A SINE B4 166 292 0 1 1472 767 272 161 39 chr11 116372637 116372973 -5470883 - MTD LTR MaLR -39 380 4 1 1472 326 264 53 62 chr11 116373256 116373414 -5470442 + MLT1H2 LTR MaLR 69 195 -360 1 1472 362 267 15 0 chr11 116373528 116373630 -5470226 + MLT1H2 LTR MaLR 380 579 0 1 1472 828 224 196 45 chr11 116373709 116373915 -5469941 - MTD LTR MaLR -32 387 137 1 1472 1157 62 0 0 chr11 116373915 116374061 -5469795 - B1_Mm SINE Alu 0 147 2 1 1472 828 224 196 45 chr11 116374061 116374190 -5469666 - MTD LTR MaLR -283 136 1 1 1472 855 133 0 0 chr11 116374273 116374408 -5469448 - B1_Mus2 SINE Alu 0 147 13 1 1472 490 253 109 49 chr11 116375087 116375270 -5468586 - B4 SINE B4 -75 217 24 1 1472 524 206 0 61 chr11 116375269 116375383 -5468473 - ID_B1 SINE B4 -16 208 102 1 1472 661 165 74 15 chr11 116375708 116375843 -5468013 + B1_Mus1 SINE Alu 1 143 -5 1 1472 1047 234 5 5 chr11 116375880 116376090 -5467766 + B3 SINE B2 2 211 -5 1 1472 711 158 0 0 chr11 116376104 116376231 -5467625 + GA-rich Low_complexity Low_complexity 2 128 0 1 1472 625 253 73 0 chr11 116376263 116376413 -5467443 + RSINE1 SINE B4 2 162 -3 1 1472 22 56 0 0 chr11 116377398 116377434 -5466422 + AT_rich Low_complexity Low_complexity 1 36 0 1 1472 387 0 0 0 chr11 116377438 116377481 -5466375 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1472 392 213 0 0 chr11 116377481 116377556 -5466300 - B3A SINE B2 -50 148 74 1 1472 324 0 0 0 chr11 116377594 116377630 -5466226 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1472 495 118 0 0 chr11 116377670 116377746 -5466110 + (TAAA)n Simple_repeat Simple_repeat 2 77 0 1 1472 225 0 0 0 chr11 116378073 116378098 -5465758 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1472 1166 48 0 0 chr11 116378098 116378245 -5465611 - B1_Mm SINE Alu 0 147 1 1 1472 446 240 44 31 chr11 116378270 116378429 -5465427 - RSINE1 SINE B4 -2 163 3 1 1472 885 222 51 5 chr11 116378465 116378660 -5465196 - B3 SINE B2 -11 205 2 1 1472 252 56 0 0 chr11 116378672 116378687 -5465169 + (TAAA)n Simple_repeat Simple_repeat 1 15 0 1 1472 1503 57 0 0 chr11 116378687 116378880 -5464976 + B2_Mm1a SINE B2 1 193 0 1 1472 252 56 0 0 chr11 116378880 116378900 -5464956 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1 1472 529 162 32 18 chr11 116378915 116379028 -5464828 + B1_Mur3 SINE Alu 10 149 0 1 1472 288 0 0 0 chr11 116379077 116379109 -5464747 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1472 224 242 127 32 chr11 116379110 116379203 -5464653 + PB1D7 SINE Alu 4 119 -1 1 1472 465 270 92 36 chr11 116379219 116379415 -5464441 + ID_B1 SINE B4 5 211 -13 1 1472 1820 151 42 16 chr11 116379415 116379799 -5464057 + RMER17C LTR ERVK 17 410 0 1 1472 236 89 0 82 chr11 116380178 116380196 -5463660 + T-rich Low_complexity Low_complexity 28 45 0 1 1472 1073 82 0 0 chr11 116380196 116380343 -5463513 - B1_Mus2 SINE Alu 0 147 1 1 1472 236 89 0 82 chr11 116380343 116380373 -5463483 + T-rich Low_complexity Low_complexity 1 27 0 1 1472 597 40 0 0 chr11 116380376 116380452 -5463404 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1472 291 54 0 0 chr11 116380452 116380489 -5463367 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1472 337 278 0 22 chr11 116380489 116380581 -5463275 - B1_Mur1 SINE Alu -12 137 48 1 1472 1218 40 0 0 chr11 116380915 116381063 -5462793 - B1_Mus1 SINE Alu 0 148 1 1 1472 570 320 59 21 chr11 116381064 116381303 -5462553 - B4A SINE B4 -42 250 3 1 1472 220 265 0 0 chr11 116381660 116381709 -5462147 + CT-rich Low_complexity Low_complexity 1 49 0 1 1472 360 240 200 0 chr11 116381709 116381809 -5462047 - PB1D9 SINE Alu 0 120 1 1 1472 911 115 0 0 chr11 116382194 116382324 -5461532 + B1_Mus2 SINE Alu 11 140 -7 1 1472 390 101 0 0 chr11 116382325 116382394 -5461462 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1472 1076 252 87 40 chr11 116382418 116382765 -5461091 - MTE2a LTR MaLR 0 379 17 1 1472 387 0 0 0 chr11 116382824 116382867 -5460989 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1472 1062 76 6 48 chr11 116382867 116383033 -5460823 - B2_Mm1a SINE B2 -33 160 2 1 1472 24 0 0 0 chr11 116383038 116383062 -5460794 + AT_rich Low_complexity Low_complexity 1 24 0 1 1472 22 0 0 0 chr11 116383142 116383164 -5460692 + AT_rich Low_complexity Low_complexity 1 22 0 1 1472 747 212 14 0 chr11 116383227 116383373 -5460483 + B1_Mur1 SINE Alu 1 148 -1 1 1472 21 0 0 0 chr11 116383374 116383395 -5460461 + AT_rich Low_complexity Low_complexity 1 21 0 1 1472 493 299 8 0 chr11 116383403 116383537 -5460319 + ID_B1 SINE B4 86 220 -4 1 1472 744 252 71 67 chr11 116383537 116383838 -5460018 + B4A SINE B4 2 291 -1 1 1472 342 0 0 0 chr11 116383846 116383884 -5459972 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1472 262 241 43 61 chr11 116383894 116383958 -5459898 + PB1D10 SINE Alu 5 117 0 1 1472 273 196 0 0 chr11 116383958 116384009 -5459847 + ID_B1 SINE B4 174 224 0 1 1472 263 183 28 0 chr11 116384042 116384113 -5459743 + A-rich Low_complexity Low_complexity 3 75 0 1 1472 298 273 150 59 chr11 116385809 116385996 -5457860 + MLT1D LTR MaLR 1 204 -301 1 1472 307 194 60 0 chr11 116385953 116386020 -5457836 + ID_B1 SINE B4 102 172 -52 1 1472 1053 102 0 0 chr11 116386030 116386177 -5457679 - B1_Mm SINE Alu 0 147 1 1 1472 216 237 0 0 chr11 116386218 116386256 -5457600 + polypurine Low_complexity Low_complexity 3 40 0 1 1472 1433 232 3 37 chr11 116387374 116387727 -5456129 - RMER19C LTR ERVK -5 606 266 1 1472 588 207 0 33 chr11 116387722 116387842 -5456014 + B1_Mur2 SINE Alu 32 147 -2 1 1472 593 261 12 37 chr11 116387850 116388013 -5455843 + ID_B1 SINE B4 5 163 -61 1 1472 960 173 0 0 chr11 116388032 116388211 -5455645 + GA-rich Low_complexity Low_complexity 2 180 0 1 1472 342 337 123 10 chr11 116388222 116388417 -5455439 + MLT1D LTR MaLR 111 327 -178 1 1472 625 299 33 29 chr11 116389102 116389312 -5454544 + B4A SINE B4 15 225 -67 1 1472 1113 75 0 20 chr11 116389318 116389467 -5454389 + B1_Mm SINE Alu 1 146 -1 1 1472 713 232 14 0 chr11 116389498 116389636 -5454220 + B1_Mus1 SINE Alu 8 147 -1 1 1472 1814 120 104 15 chr11 116390110 116390448 -5453408 - ORR1C1 LTR MaLR -10 368 1 1 1472 681 120 154 7 chr11 116390686 116390829 -5453027 + RLTR20A2 LTR ERVK 1 164 -414 1 1472 243 286 0 8 chr11 116390866 116390893 -5452963 + ORR1B1-int LTR MaLR 622 754 -755 1 1472 772 75 0 0 chr11 116390893 116391000 -5452856 + B1_Mus2 SINE Alu 1 107 -40 1 1472 671 64 0 21 chr11 116390995 116391091 -5452765 - B2_Mm2 SINE B2 -98 97 4 1 1472 180 97 0 0 chr11 116391104 116391135 -5452721 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1 1472 561 283 37 25 chr11 116391205 116391368 -5452488 + RSINE1 SINE B4 1 165 0 1 1472 348 184 0 0 chr11 116391369 116391472 -5452384 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1472 447 68 0 0 chr11 116391769 116391828 -5452028 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1473 1248 28 7 0 chr11 116395776 116395921 -5447935 - B1_Mus2 SINE Alu 0 147 2 1 1473 788 241 5 61 chr11 116395922 116396134 -5447722 - B3 SINE B2 -16 200 1 1 1473 195 42 0 0 chr11 116401588 116401612 -5442244 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 1 1473 1103 75 7 14 chr11 116407418 116407566 -5436290 + B1_Mus2 SINE Alu 1 147 0 1 1473 185 35 69 0 chr11 116407571 116407600 -5436256 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1473 404 265 35 6 chr11 116409465 116409628 -5434228 - B3 SINE B2 0 216 3 1 1473 802 210 74 16 chr11 116409637 116409826 -5434030 + B3 SINE B2 1 200 -16 1 1473 216 0 0 0 chr11 116409826 116409850 -5434006 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1473 343 203 283 3 chr11 116412774 116412884 -5430972 - B1_Mur1 SINE Alu -11 137 5 1 1473 681 275 29 0 chr11 116412892 116413063 -5430793 - B3A SINE B2 -20 178 3 1 1473 694 189 26 33 chr11 116413091 116413244 -5430612 + B3 SINE B2 65 216 0 1 1473 240 220 67 17 chr11 116413238 116413298 -5430558 + B4A SINE B4 216 278 -14 1 1473 391 333 56 0 chr11 116413662 116413806 -5430050 - B3A SINE B2 -1 197 46 1 1473 323 301 35 26 chr11 116414224 116414340 -5429516 + PB1D10 SINE Alu 1 117 0 1 1473 733 244 35 29 chr11 116416232 116416405 -5427451 + B3 SINE B2 10 183 -33 1 1473 229 331 98 63 chr11 116416390 116416416 -5427440 + B4A SINE B4 69 166 -126 1 1473 612 189 101 16 chr11 116416416 116416545 -5427311 + B1_Mur1 SINE Alu 10 149 0 1 1473 229 331 98 63 chr11 116416545 116416564 -5427292 + B4A SINE B4 167 248 -44 1 1473 380 245 38 49 chr11 116416754 116416873 -5426983 - B1F1 SINE Alu 0 117 1 1 1473 773 281 156 31 chr11 116418139 116418561 -5425295 - Lx8 LINE L1 0 7473 6999 1 1473 463 167 92 77 chr11 116418674 116418804 -5425052 + URR1B DNA MER1_type 94 225 0 1 1473 539 260 137 34 chr11 116420287 116420462 -5423394 + B3A SINE B2 3 195 -3 1 1473 367 150 0 0 chr11 116421360 116421420 -5422436 - ORR1D2 LTR MaLR 0 370 311 1 1473 1213 182 146 55 chr11 116421387 116421431 -5422425 - MT-int LTR MaLR -79 1179 1137 1 1473 1068 78 14 7 chr11 116421431 116421573 -5422283 + B1_Mus1 SINE Alu 2 144 -4 1 1473 2354 65 8 4 chr11 116421573 116421912 -5421944 - MT-int LTR MaLR -122 1136 678 1 1473 625 294 27 62 chr11 116422448 116422523 -5421333 - B4 SINE B4 -2 290 229 1 1473 1315 70 11 28 chr11 116422523 116422700 -5421156 - B2_Mm1a SINE B2 -19 174 1 1 1473 625 294 27 62 chr11 116422700 116422849 -5421007 - B4 SINE B4 -64 228 74 1 1473 461 204 21 0 chr11 116422892 116422985 -5420871 - PB1D10 SINE Alu -6 111 17 1 1473 788 119 35 43 chr11 116423171 116423312 -5420544 - B1_Mur4 SINE Alu 0 150 11 1 1473 933 159 148 5 chr11 116423323 116423512 -5420344 - B3 SINE B2 0 216 1 1 1473 890 215 45 0 chr11 116424271 116424471 -5419385 + B3 SINE B2 1 209 -7 1 1473 206 210 0 31 chr11 116424477 116424541 -5419315 + A-rich Low_complexity Low_complexity 5 66 0 1 1473 494 136 155 0 chr11 116424551 116424654 -5419202 + B1_Mus1 SINE Alu 28 146 -2 1 1473 1419 86 37 0 chr11 116424857 116425044 -5418812 + B2_Mm2 SINE B2 1 194 -1 1 1473 289 203 0 0 chr11 116425061 116425130 -5418726 + PB1 SINE Alu 7 76 -51 1 1473 517 178 19 9 chr11 116425157 116425265 -5418591 + B1_Mur2 SINE Alu 36 144 -5 1 1473 393 287 9 0 chr11 116425279 116425394 -5418462 + PB1D7 SINE Alu 5 120 0 1 1473 517 252 39 32 chr11 116425412 116425568 -5418288 + ID_B1 SINE B4 2 158 -66 1 1473 220 370 12 0 chr11 116425833 116425914 -5417942 + ID4 SINE ID 2 83 0 1 1473 1090 85 7 0 chr11 116426092 116426233 -5417623 + B1_Mus2 SINE Alu 5 146 -1 1 1473 259 282 0 37 chr11 116426670 116426751 -5417105 + B4 SINE B4 1 78 -214 1 1473 398 240 331 0 chr11 116427759 116427913 -5415943 + B3 SINE B2 6 210 -6 1 1473 328 262 64 64 chr11 116427936 116428046 -5415810 + B1F2 SINE Alu 8 117 -32 1 1473 227 304 14 0 chr11 116428102 116428171 -5415685 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1473 246 288 0 15 chr11 116428334 116428401 -5415455 - B3A SINE B2 -36 162 97 1 1473 699 134 241 12 chr11 116429167 116429333 -5414523 + B3 SINE B2 5 208 -8 1 1473 981 45 78 43 chr11 116429443 116429584 -5414272 + B1_Mus2 SINE Alu 1 146 -1 1 1473 210 71 0 0 chr11 116429584 116429612 -5414244 + (CAAAC)n Simple_repeat Simple_repeat 5 32 0 1 1473 344 208 38 25 chr11 116429823 116429893 -5413963 + Charlie1 DNA MER1_type 165 236 -2545 1 1473 1682 32 0 0 chr11 116429893 116430080 -5413776 - B2_Mm1a SINE B2 -6 187 1 1 1473 445 159 45 11 chr11 116430194 116430283 -5413573 - PB1D9 SINE Alu 0 120 29 1 1473 576 216 0 17 chr11 116430328 116430446 -5413410 - PB1D10 SINE Alu 0 117 2 1 1473 1265 35 0 0 chr11 116430632 116430777 -5413079 + B1_Mm SINE Alu 2 146 -1 1 1473 348 24 0 0 chr11 116430898 116430939 -5412917 + (CAAG)n Simple_repeat Simple_repeat 3 43 0 1 1473 237 222 37 0 chr11 116431284 116431338 -5412518 + MIR SINE MIR 90 145 -117 1 1473 255 312 26 0 chr11 116432547 116432624 -5411232 + ID4 SINE ID 5 83 0 1 1473 408 204 117 27 chr11 116432962 116433073 -5410783 + PB1 SINE Alu 1 121 -6 1 1473 212 301 38 28 chr11 116433648 116433754 -5410102 + GA-rich Low_complexity Low_complexity 5 111 0 1 1473 549 267 78 20 chr11 116433814 116433967 -5409889 + RSINE1 SINE B4 4 165 0 1 1473 332 224 157 41 chr11 116436333 116436454 -5407402 + B1_Mur2 SINE Alu 8 142 -7 1 1473 201 275 72 0 chr11 116436894 116436963 -5406893 - MIR SINE MIR -103 105 32 1 1473 600 181 23 30 chr11 116437485 116437616 -5406240 + ID_B1 SINE B4 80 209 -15 1 1473 192 152 0 0 chr11 116437618 116437651 -5406205 + GA-rich Low_complexity Low_complexity 4 36 0 1 1473 427 259 137 0 chr11 116438049 116438180 -5405676 - B1_Mur2 SINE Alu 0 149 1 1 1473 400 225 0 0 chr11 116438384 116438464 -5405392 + B3A SINE B2 2 81 -117 1 1473 221 314 58 11 chr11 116438603 116438690 -5405166 + PB1D10 SINE Alu 1 91 -26 1 1473 208 0 0 59 chr11 116438704 116438738 -5405118 + (CTGGGG)n Simple_repeat Simple_repeat 3 34 0 1 1473 843 180 52 6 chr11 116438738 116438911 -5404945 + B2_Mm2 SINE B2 9 189 -6 1 1473 377 248 96 7 chr11 116438938 116438982 -5404874 - B4A SINE B4 -46 246 88 1 1473 793 39 0 0 chr11 116438982 116439084 -5404772 - B1_Mus1 SINE Alu -44 104 3 1 1473 380 271 18 27 chr11 116439187 116439297 -5404559 - B1_Mus1 SINE Alu -1 147 39 1 1473 314 171 8 103 chr11 116439388 116439482 -5404374 + MTD LTR MaLR 320 408 -13 1 1473 338 168 68 78 chr11 116439487 116439590 -5404266 + PB1D9 SINE Alu 19 120 0 1 1473 491 219 18 37 chr11 116439654 116439763 -5404093 + B1_Mus2 SINE Alu 1 107 -40 1 1473 186 43 0 0 chr11 116440877 116440900 -5402956 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1473 620 129 76 25 chr11 116440900 116441019 -5402837 - B1_Mur2 SINE Alu -11 138 14 1 1473 1240 48 0 0 chr11 116441019 116441165 -5402691 + B1_Mus1 SINE Alu 2 147 -1 1 1473 312 260 38 38 chr11 116441328 116441408 -5402448 + ID4_ SINE ID 3 82 -1 1 1473 218 132 19 0 chr11 116442635 116442688 -5401168 + (CGG)n Simple_repeat Simple_repeat 2 55 0 1 1473 258 156 0 0 chr11 116442748 116442793 -5401063 + (CGG)n Simple_repeat Simple_repeat 2 46 0 1 1473 33 25 0 0 chr11 116442797 116442837 -5401019 + GC_rich Low_complexity Low_complexity 1 40 0 1 1473 345 196 26 113 chr11 116443073 116443089 -5400767 + MT2B LTR ERVL 155 160 -441 1 1473 608 137 129 8 chr11 116443089 116443221 -5400635 + B1_Mur3 SINE Alu 2 149 0 1 1473 1134 55 7 33 chr11 116443223 116443374 -5400482 + B1_Mus1 SINE Alu 1 147 -1 1 1473 551 173 35 26 chr11 116443419 116443532 -5400324 + B1_Mur4 SINE Alu 10 123 -27 1 1473 899 69 61 0 chr11 116443519 116443650 -5400206 + B1_Mus1 SINE Alu 10 148 0 1 1473 198 0 0 0 chr11 116443653 116443675 -5400181 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1473 505 30 0 0 chr11 116443687 116443754 -5400102 + L1_Mus2 LINE L1 6500 6566 0 1 1473 245 143 0 0 chr11 116443772 116443814 -5400042 + B1_Mus2 SINE Alu 87 128 -19 1 1473 30 27 0 0 chr11 116443814 116443851 -5400005 + AT_rich Low_complexity Low_complexity 1 37 0 1 1473 225 0 0 0 chr11 116443851 116443876 -5399980 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1473 706 137 23 0 chr11 116443923 116444054 -5399802 + A-rich Low_complexity Low_complexity 2 135 0 1 1473 481 221 25 171 chr11 116444056 116444214 -5399642 - B1_Mur1 SINE Alu -12 137 3 1 1473 1183 68 7 0 chr11 116444710 116444856 -5399000 + B1_Mus1 SINE Alu 2 148 0 1 1473 558 170 30 0 chr11 116444871 116444971 -5398885 + B1_Mur2 SINE Alu 47 149 0 1 1473 2190 131 16 0 chr11 116445014 116445335 -5398521 + ORR1A3 LTR MaLR 1 326 0 1 1473 341 238 94 9 chr11 116445397 116445503 -5398353 - RSINE1 SINE B4 -43 122 8 1 1473 970 192 83 0 chr11 116446183 116446376 -5397480 + B3 SINE B2 2 210 -6 1 1473 380 223 195 16 chr11 116446388 116446511 -5397345 + B1_Mm SINE Alu 3 147 0 1 1473 1526 46 0 53 chr11 116446539 116446745 -5397111 + B2_Mm2 SINE B2 1 195 0 1 1473 609 176 111 30 chr11 116446882 116447017 -5396839 + B1_Mus2 SINE Alu 1 146 -1 1 1473 834 236 67 9 chr11 116447062 116447272 -5396584 + ID_B1 SINE B4 2 223 -1 1 1473 229 353 29 0 chr11 116447413 116447515 -5396341 + B4A SINE B4 107 211 -81 1 1473 2031 123 0 0 chr11 116447517 116447825 -5396031 + MTC LTR MaLR 1 308 -113 1 1473 338 306 8 40 chr11 116447807 116447933 -5395923 - Charlie16a DNA MER1_type -158 184 63 1 1473 534 300 72 29 chr11 116448713 116448991 -5394865 - B4A SINE B4 0 292 3 1 1473 307 284 0 69 chr11 116449030 116449117 -5394739 + B1F SINE Alu 37 117 -32 1 1473 383 258 165 21 chr11 116449475 116449669 -5394187 - L1MC1 LINE L1 -99 6234 6013 1 1473 299 211 0 90 chr11 116449709 116449787 -5394069 + ID4_ SINE ID 2 72 -11 1 1473 303 93 0 0 chr11 116449802 116449845 -5394011 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 1 1473 262 264 96 44 chr11 116450214 116450349 -5393507 - MLT1A1 LTR MaLR 0 408 267 1 1473 204 40 0 0 chr11 116450924 116450949 -5392907 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1473 935 142 0 0 chr11 116451175 116451309 -5392547 - B1_Mur4 SINE Alu -16 134 1 1 1473 1274 154 24 9 chr11 116451323 116451533 -5392323 - B3 SINE B2 -3 213 1 1 1473 259 122 0 0 chr11 116451558 116451599 -5392257 + MER5B DNA MER1_type 138 178 0 1 1473 1191 201 100 37 chr11 116451830 116452141 -5391715 + MTD LTR MaLR 82 403 -16 1 1473 818 221 13 127 chr11 116452175 116452206 -5391650 + B3 SINE B2 5 34 -182 1 1473 423 98 0 0 chr11 116452206 116452267 -5391589 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1473 818 221 13 127 chr11 116452267 116452463 -5391393 + B3 SINE B2 35 206 -10 1 1473 450 0 0 0 chr11 116452608 116452658 -5391198 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1473 1107 63 0 53 chr11 116452660 116452810 -5391046 - B1_Mus1 SINE Alu -6 142 1 1 1473 324 0 0 0 chr11 116452952 116452988 -5390868 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1473 279 0 0 0 chr11 116452988 116453018 -5390838 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1473 365 72 0 35 chr11 116453025 116453083 -5390773 + (TCTCC)n Simple_repeat Simple_repeat 1 56 0 1 1473 542 213 39 0 chr11 116453113 116453240 -5390616 - ID_B1 SINE B4 -26 198 67 1 1473 342 0 0 0 chr11 116454384 116454422 -5389434 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1473 296 151 38 0 chr11 116454556 116454609 -5389247 + MIRb SINE MIR 122 176 -92 1 1473 197 256 178 0 chr11 116454710 116454800 -5389056 - MIR SINE MIR -84 124 19 1 1473 582 169 16 53 chr11 116455114 116455301 -5388555 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1473 846 265 23 75 chr11 116455301 116455566 -5388290 - B4 SINE B4 0 292 42 1 1473 761 189 13 7 chr11 116455619 116455768 -5388088 - RSINE1 SINE B4 -8 157 8 1 1473 548 299 28 0 chr11 116456079 116456256 -5387600 + B3A SINE B2 1 182 -16 1 1473 216 196 0 0 chr11 116456270 116456316 -5387540 + A-rich Low_complexity Low_complexity 1 46 0 1 1473 957 128 0 0 chr11 116456700 116456880 -5386976 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1473 369 0 0 0 chr11 116457158 116457199 -5386657 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1473 369 0 0 0 chr11 116457199 116457239 -5386617 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1473 336 48 0 0 chr11 116457260 116457302 -5386554 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 1 1473 1430 143 0 26 chr11 116457706 116457935 -5385921 - URR1B DNA MER1_type -2 223 1 1 1473 277 231 0 133 chr11 116459302 116459392 -5384464 + MT2B LTR ERVL 152 229 -372 1 1473 496 143 21 21 chr11 116459323 116459416 -5384440 + B1_Mus1 SINE Alu 5 97 -51 1 1473 463 158 9 27 chr11 116464019 116464130 -5379726 - L1Md_F2 LINE L1 0 6582 6474 1 1473 625 259 37 0 chr11 116464314 116464449 -5379407 - B1_Mur1 SINE Alu -9 140 1 1 1473 403 236 169 14 chr11 116464477 116464619 -5379237 - RSINE1 SINE B4 0 165 2 1 1473 270 0 0 0 chr11 116464699 116464729 -5379127 + (ACTG)n Simple_repeat Simple_repeat 1 30 0 1 1473 803 243 35 65 chr11 116467738 116467967 -5375889 + ID_B1 SINE B4 2 223 -1 1 1473 201 183 0 0 chr11 116468855 116468915 -5374941 + G-rich Low_complexity Low_complexity 1 60 0 1 1473 374 248 9 98 chr11 116469377 116469489 -5374367 + PB1 SINE Alu 12 113 -14 1 1473 320 253 7 100 chr11 116469489 116469592 -5374264 + PB1D10 SINE Alu 15 119 -1 1 1473 561 224 224 0 chr11 116469652 116469804 -5374052 - ID_B1 SINE B4 -31 193 8 1 1473 643 281 44 29 chr11 116470351 116470556 -5373300 - B3 SINE B2 -8 208 1 1 1473 1116 49 0 0 chr11 116470579 116470723 -5373133 - B2_Mm2 SINE B2 -49 146 3 1 1473 246 95 0 0 chr11 116470887 116470929 -5372927 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 1473 180 0 0 0 chr11 116471098 116471118 -5372738 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 1 1473 254 262 0 0 chr11 116471235 116471296 -5372560 + B1_Mus2 SINE Alu 1 61 -86 1 1473 659 241 14 0 chr11 116472038 116472179 -5371677 - ID_B1 SINE B4 0 224 82 1 1473 300 27 0 0 chr11 116472233 116472270 -5371586 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1473 1221 62 0 0 chr11 116472272 116472417 -5371439 - B1_Mus2 SINE Alu -1 146 2 1 1473 22 0 0 0 chr11 116472426 116472448 -5371408 + AT_rich Low_complexity Low_complexity 1 22 0 1 1473 801 257 5 35 chr11 116472507 116472705 -5371151 - B3 SINE B2 -14 202 11 1 1473 192 152 0 0 chr11 116472720 116472753 -5371103 + CT-rich Low_complexity Low_complexity 2 34 0 1 1473 906 41 0 16 chr11 116472753 116472876 -5370980 - B1_Mm SINE Alu 0 147 27 1 1473 512 299 62 120 chr11 116472879 116473153 -5370703 + B4 SINE B4 1 258 -34 1 1473 564 15 0 0 chr11 116473154 116473219 -5370637 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1473 278 308 13 0 chr11 116473483 116473561 -5370295 + ID4_ SINE ID 1 79 -4 1 1473 259 247 91 0 chr11 116473922 116473999 -5369857 - MIRm SINE MIR -149 127 44 1 1473 198 0 0 0 chr11 116474592 116474614 -5369242 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 1473 1666 171 75 34 chr11 116474783 116475141 -5368715 + ORR1D1 LTR MaLR 1 373 -1 1 1473 1167 196 118 0 chr11 116475242 116475513 -5368343 - RMER1C Other Other 0 1342 1040 1 1473 354 138 0 0 chr11 116475554 116475612 -5368244 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1473 298 96 26 0 chr11 116475613 116475670 -5368186 - PB1D9 SINE Alu -82 66 3 1 1473 276 149 87 29 chr11 116475670 116475681 -5368175 - B4 SINE B4 -141 150 79 1 1473 309 51 0 0 chr11 116475700 116475739 -5368117 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1473 690 234 22 116 chr11 116475740 116475972 -5367884 - RMER1C Other Other -353 989 780 1 1473 341 318 18 0 chr11 116476006 116476116 -5367740 - RMER1C Other Other -1202 140 29 1 1473 216 171 0 0 chr11 116477472 116477513 -5366343 + C-rich Low_complexity Low_complexity 1 41 0 1 1473 675 0 0 0 chr11 116478426 116478501 -5365355 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 1 1473 384 22 0 0 chr11 116478858 116478903 -5364953 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1473 255 264 0 0 chr11 116479508 116479561 -5364295 + ID4 SINE ID 9 61 -22 1 1473 294 95 0 0 chr11 116479561 116479603 -5364253 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1473 886 239 28 33 chr11 116481225 116481437 -5362419 - B3 SINE B2 0 216 6 1 1473 186 174 64 21 chr11 116481601 116481648 -5362208 - MIRc SINE MIR -23 245 197 1 1473 566 298 84 0 chr11 116482990 116483168 -5360688 + B3 SINE B2 1 193 -23 1 1473 545 252 38 15 chr11 116483477 116483610 -5360246 - ID_B1 SINE B4 -7 217 82 1 1473 265 294 55 61 chr11 116483610 116483638 -5360218 + YREP_Mm Unknown Unknown 182 341 -1471 1 1473 329 216 40 13 chr11 116484529 116484604 -5359252 - MER20 DNA MER1_type -142 77 1 1 1473 214 234 64 0 chr11 116485745 116485792 -5358064 + ID4 SINE ID 28 77 -6 1 1473 253 345 12 0 chr11 116486383 116486467 -5357389 + MIRb SINE MIR 57 141 -127 1 1473 1122 70 34 105 chr11 116487188 116487367 -5356489 + B2_Mm2 SINE B2 2 168 -27 1 1473 1070 71 43 0 chr11 116487367 116487508 -5356348 - B1_Mus1 SINE Alu 0 148 2 1 1473 1122 70 34 105 chr11 116487508 116487537 -5356319 + B2_Mm2 SINE B2 169 195 0 1 1473 428 305 155 0 chr11 116487542 116487689 -5356167 + B3 SINE B2 1 150 -66 1 1473 291 56 56 0 chr11 116487689 116487743 -5356113 + (CATA)n Simple_repeat Simple_repeat 3 59 0 1 1473 428 305 155 0 chr11 116487743 116487782 -5356074 + B3 SINE B2 151 215 -1 1 1473 207 0 0 0 chr11 116488190 116488213 -5355643 + (GGCTG)n Simple_repeat Simple_repeat 1 23 0 1 1473 338 313 70 45 chr11 116488440 116488597 -5355259 + L1MC4a LINE L1 5794 5954 -1928 1 1473 849 194 0 40 chr11 116488666 116488816 -5355040 - B1_Mur1 SINE Alu -5 144 1 1 1473 688 164 78 0 chr11 116488841 116488969 -5354887 - B1_Mus1 SINE Alu -1 147 10 1 1473 301 340 41 48 chr11 116488842 116488987 -5354869 - B4A SINE B4 -68 224 81 1 1473 878 177 50 39 chr11 116489040 116489222 -5354634 - B3 SINE B2 -32 184 1 1 1473 572 180 110 59 chr11 116489327 116489463 -5354393 - B1F SINE Alu -1 148 6 1 1473 416 231 65 130 chr11 116489463 116489496 -5354360 - ID_B1 SINE B4 -1 223 66 1 1473 270 179 0 0 chr11 116489659 116489715 -5354141 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1473 664 262 82 59 chr11 116489715 116489934 -5353922 - B4 SINE B4 0 292 69 1 1473 707 69 118 25 chr11 116490747 116490866 -5352990 + B1_Mur4 SINE Alu 20 149 -1 1 1473 560 267 156 46 chr11 116490874 116491157 -5352699 - MTE2b LTR MaLR -65 314 1 1 1473 2377 125 49 24 chr11 116491492 116492026 -5351830 + RMER17D2 LTR ERVK 2 553 -198 1 1473 769 77 25 8 chr11 116492027 116492145 -5351711 + RMER17D2 LTR ERVK 690 809 0 1 1473 366 206 283 0 chr11 116492145 116492237 -5351619 - RSINE1 SINE B4 -24 141 24 1 1473 1249 164 87 0 chr11 116492244 116492452 -5351404 + URR1A DNA MER1_type 1 226 0 1 1473 239 194 132 15 chr11 116492488 116492556 -5351300 - ID4_ SINE ID -5 78 3 1 1473 1089 210 52 31 chr11 116492662 116493027 -5350829 - RMER10A LTR ERVL -25 373 3 1 1473 469 258 16 8 chr11 116493028 116493149 -5350707 - B3A SINE B2 -68 130 9 1 1473 417 262 63 58 chr11 116493162 116493180 -5350676 - B3 SINE B2 0 216 202 1 1473 1595 42 16 0 chr11 116493180 116493370 -5350486 - B2_Mm2 SINE B2 -2 193 1 1 1473 606 246 38 33 chr11 116493370 116493558 -5350298 - B3A SINE B2 -15 201 9 1 1473 531 0 0 0 chr11 116493560 116493619 -5350237 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1473 346 296 0 0 chr11 116493619 116493701 -5350155 - ID_B1 SINE B4 -12 212 131 1 1473 883 161 14 7 chr11 116493888 116494032 -5349824 - B1_Mus2 SINE Alu -2 145 1 1 1473 384 285 135 68 chr11 116494032 116494224 -5349632 - ORR1D2 LTR MaLR -160 210 6 1 1473 262 267 151 0 chr11 116494248 116494334 -5349522 - ID_B1 SINE B4 -125 99 1 1 1473 285 250 39 59 chr11 116494422 116494524 -5349332 + MER45B DNA Tip100 637 736 -304 1 1473 410 275 11 0 chr11 116494567 116494658 -5349198 + RSINE1 SINE B4 37 128 -37 1 1473 24 0 0 0 chr11 116494659 116494683 -5349173 + AT_rich Low_complexity Low_complexity 1 24 0 1 1473 978 122 13 26 chr11 116494683 116494834 -5349022 + B1_Mur4 SINE Alu 2 150 0 1 1473 300 308 108 75 chr11 116494835 116494918 -5348938 + L1MD LINE L1 3096 3178 -2968 1 1473 1259 35 0 0 chr11 116494918 116495063 -5348793 + B1_Mm SINE Alu 3 147 0 1 1473 300 308 108 75 chr11 116495063 116495165 -5348691 + L1MD LINE L1 3179 3287 -2859 1 1473 248 262 34 91 chr11 116495205 116495293 -5348563 - RSINE1 SINE B4 0 165 83 1 1473 996 101 65 0 chr11 116495622 116495760 -5348096 + B1_Mus2 SINE Alu 1 147 0 1 1473 240 273 56 91 chr11 116495865 116496034 -5347822 + RLTR41 LTR ERV1 251 466 -53 1 1473 224 352 0 14 chr11 116496059 116496131 -5347725 - RSINE1 SINE B4 -84 81 11 1 1473 27 0 0 0 chr11 116496131 116496158 -5347698 + AT_rich Low_complexity Low_complexity 1 27 0 1 1473 632 318 32 45 chr11 116496169 116496390 -5347466 + ID_B1 SINE B4 1 218 -6 1 1473 5402 134 35 49 chr11 116496403 116496634 -5347222 + Lx4A LINE L1 6176 6424 -634 1 1473 3029 63 37 5 chr11 116496634 116497016 -5346840 - MTA_Mm LTR MaLR 0 396 3 1 1473 5402 134 35 49 chr11 116497016 116497219 -5346637 + Lx4A LINE L1 6425 6606 -452 1 1473 1213 68 0 0 chr11 116497219 116497365 -5346491 - B1_Mus2 SINE Alu 0 147 2 1 1473 5402 134 35 49 chr11 116497365 116497823 -5346033 + Lx4A LINE L1 6607 7055 -3 1 1473 211 104 42 0 chr11 116497873 116497921 -5345935 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 1473 970 130 7 14 chr11 116497927 116498075 -5345781 + B1_Mur3 SINE Alu 2 148 -1 1 1473 1654 26 0 5 chr11 116498079 116498270 -5345586 + B2_Mm1a SINE B2 2 191 -2 1 1473 25 0 0 0 chr11 116498294 116498319 -5345537 + AT_rich Low_complexity Low_complexity 1 25 0 1 1473 599 112 149 0 chr11 116498319 116498426 -5345430 - B1_Mur4 SINE Alu -6 144 22 1 1473 221 132 0 0 chr11 116498437 116498475 -5345381 + B3A SINE B2 2 39 -159 1 1473 1477 83 16 0 chr11 116498478 116498670 -5345186 + B2_Mm2 SINE B2 1 195 0 1 1473 1601 47 0 20 chr11 116498670 116498867 -5344989 + B2_Mm1a SINE B2 1 193 0 1 1473 356 223 36 0 chr11 116498875 116498966 -5344890 + B3 SINE B2 27 122 -71 1 1473 291 246 0 0 chr11 116498955 116499012 -5344844 - PB1D7 SINE Alu -57 63 7 1 1473 369 207 282 8 chr11 116499258 116499375 -5344481 - B1_Mur1 SINE Alu 0 149 1 1 1473 360 0 0 0 chr11 116499490 116499530 -5344326 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1473 608 266 78 46 chr11 116499576 116499793 -5344063 - ORR1D2 LTR MaLR -146 224 1 1 1473 403 228 77 25 chr11 116499829 116499989 -5343867 - B4A SINE B4 -88 204 1 1 1473 783 157 234 17 chr11 116500418 116500593 -5343263 + B3 SINE B2 1 213 -3 1 1473 2345 104 9 0 chr11 116500614 116500940 -5342916 + ORR1A4 LTR MaLR 1 329 0 2 1473 547 274 8 8 chr11 116500941 116501066 -5342790 - B1F SINE Alu -17 132 8 3 1473 272 212 0 15 chr11 116501099 116501166 -5342690 + ID_B1 SINE B4 79 144 -80 4 1473 300 289 40 24 chr11 116501166 116501290 -5342566 + MLT1A0 LTR MaLR 187 312 -53 5 1473 360 298 16 73 chr11 116501940 116502063 -5341793 + PB1D10 SINE Alu 1 116 -1 6 1473 692 152 130 0 chr11 116502575 116502713 -5341143 + B3A SINE B2 1 156 -42 7 1473 1017 139 0 0 chr11 116502833 116503006 -5340850 + (TTCC)n Simple_repeat Simple_repeat 4 176 0 8 1473 919 182 54 40 chr11 116503555 116503651 -5340205 - MTC LTR MaLR 0 421 319 9 1473 873 99 235 13 chr11 116503651 116503804 -5340052 + B2_Mm2 SINE B2 2 188 -7 1 1473 919 182 54 40 chr11 116503804 116503930 -5339926 - MTC LTR MaLR -103 318 196 9 1473 830 151 0 14 chr11 116503944 116504085 -5339771 - B1_Mus1 SINE Alu -1 147 9 1 1473 529 167 294 0 chr11 116504072 116504198 -5339658 - MTC LTR MaLR -249 170 8 9 1473 334 229 34 68 chr11 116504212 116504329 -5339527 - PB1D7 SINE Alu -1 119 4 1 1473 536 250 35 35 chr11 116504365 116504510 -5339346 - B4 SINE B4 -16 276 132 1 1473 207 0 0 0 chr11 116504534 116504557 -5339299 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1473 192 241 155 0 chr11 116505508 116505566 -5338290 - MIRc SINE MIR -118 150 84 1 1473 429 300 0 0 chr11 116506238 116506348 -5337508 - PB1D10 SINE Alu -7 110 1 1 1473 303 28 0 0 chr11 116506421 116506457 -5337399 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1473 242 273 15 15 chr11 116506457 116506524 -5337332 - ID4 SINE ID -13 70 4 1 1473 333 224 52 13 chr11 116506532 116506592 -5337264 - PB1D10 SINE Alu -1 116 53 1 1473 207 0 0 0 chr11 116506592 116506615 -5337241 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 2 1473 333 224 52 13 chr11 116506615 116506631 -5337225 - PB1D10 SINE Alu -65 52 37 1 1473 282 56 0 0 chr11 116507393 116507429 -5336427 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 2 1473 396 231 14 123 chr11 116507448 116507586 -5336270 - B1F1 SINE Alu 0 149 27 2 1473 242 213 26 26 chr11 116507800 116507877 -5335979 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 2 1473 266 152 17 0 chr11 116509356 116509415 -5334441 + G-rich Low_complexity Low_complexity 1 60 0 2 1473 246 222 0 31 chr11 116512415 116512480 -5331376 + RSINE1 SINE B4 78 140 -25 2 1473 203 284 18 41 chr11 116515267 116515436 -5328420 + (CGGG)n Simple_repeat Simple_repeat 3 167 0 2 1473 342 0 0 0 chr11 116515761 116515799 -5328057 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1473 306 273 0 61 chr11 116516601 116516683 -5327173 + RSINE1 SINE B4 27 103 -62 2 1473 1657 21 16 0 chr11 116516687 116516876 -5326980 - B2_Mm1a SINE B2 0 193 2 2 1473 477 0 0 0 chr11 116516905 116516958 -5326898 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1473 23 0 0 0 chr11 116516965 116516988 -5326868 + AT_rich Low_complexity Low_complexity 1 23 0 3 1473 1044 128 0 0 chr11 116517522 116517701 -5326155 + (CA)n Simple_repeat Simple_repeat 1 179 0 3 1473 256 333 13 0 chr11 116517914 116517992 -5325864 - ID4_ SINE ID 0 83 5 3 1473 322 240 131 8 chr11 116517995 116518117 -5325739 - B1F1 SINE Alu -7 142 6 3 1473 180 0 0 0 chr11 116519023 116519043 -5324813 + (CCCTAG)n Simple_repeat Simple_repeat 3 22 0 3 1473 305 164 14 0 chr11 116519986 116520059 -5323797 + (TTTA)n Simple_repeat Simple_repeat 1 74 0 3 1473 812 191 1 9 chr11 116520059 116520216 -5323640 - B1_Mur1 SINE Alu -1 148 1 3 1473 384 233 14 116 chr11 116520216 116520248 -5323608 - MT2B LTR ERVL -451 150 134 3 1473 546 166 0 44 chr11 116521902 116522060 -5321796 + (TG)n Simple_repeat Simple_repeat 1 151 0 3 1473 186 191 0 0 chr11 116522088 116522130 -5321726 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1473 480 218 0 17 chr11 116522160 116522337 -5321519 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 1473 507 153 0 0 chr11 116522368 116522466 -5321390 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1474 181 377 35 0 chr11 116524013 116524127 -5319729 + MIRm SINE MIR 49 166 -110 4 1474 269 311 163 32 chr11 116525102 116525277 -5318579 - MIRb SINE MIR 0 262 63 4 1474 225 0 0 0 chr11 116525939 116525964 -5317892 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1474 524 210 72 8 chr11 116526002 116526127 -5317729 + B3A SINE B2 1 133 -65 4 1474 469 157 269 34 chr11 116526135 116526254 -5317602 + B1_Mus2 SINE Alu 1 147 0 4 1474 225 83 0 0 chr11 116526255 116526291 -5317565 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1474 22 0 0 0 chr11 116526689 116526711 -5317145 + GC_rich Low_complexity Low_complexity 1 22 0 4 1474 276 352 51 48 chr11 116526713 116527005 -5316851 + L1ME1 LINE L1 5880 6172 -7 4 1474 848 249 34 6 chr11 116527311 116527489 -5316367 + B3A SINE B2 1 183 -15 4 1474 241 266 109 31 chr11 116527560 116527688 -5316168 - MIRb SINE MIR -6 262 125 4 1474 863 211 0 0 chr11 116527694 116527841 -5316015 + B1_Mur2 SINE Alu 1 147 -2 5 1474 1508 17 79 0 chr11 116528249 116528267 -5315589 - B2_Mm1a SINE B2 0 193 176 5 1474 243 0 0 0 chr11 116528267 116528294 -5315562 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1474 1508 17 79 0 chr11 116528294 116528453 -5315403 - B2_Mm1a SINE B2 -18 175 3 5 1474 267 54 0 0 chr11 116528533 116528570 -5315286 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1474 752 208 54 0 chr11 116528572 116528702 -5315154 - B1_Mur1 SINE Alu -12 137 1 5 1474 476 32 0 16 chr11 116528715 116528778 -5315078 + (TCCC)n Simple_repeat Simple_repeat 1 62 0 5 1474 1243 34 0 7 chr11 116528804 116528951 -5314905 - B1_Mm SINE Alu 0 147 2 5 1474 489 95 266 37 chr11 116528951 116529059 -5314797 - B1_Mus2 SINE Alu -11 136 3 5 1474 320 324 102 23 chr11 116529280 116529457 -5314399 - MLT1L LTR MaLR -111 499 309 5 1474 353 261 22 0 chr11 116530488 116530578 -5313278 + B4A SINE B4 4 95 -197 5 1474 885 189 38 16 chr11 116530578 116530761 -5313095 + B3 SINE B2 1 187 -29 6 1474 765 285 5 5 chr11 116530818 116531005 -5312851 + B4A SINE B4 106 292 0 5 1474 220 184 0 0 chr11 116535009 116535047 -5308809 + B3A SINE B2 3 40 -158 6 1474 397 198 132 0 chr11 116535787 116535878 -5307978 - B1_Mur1 SINE Alu -20 129 27 6 1474 590 239 82 23 chr11 116537280 116537451 -5306405 + B3 SINE B2 28 208 -8 6 1474 180 219 108 15 chr11 116539171 116539236 -5304620 - MIR SINE MIR -156 106 36 6 1474 270 0 0 0 chr11 116539537 116539567 -5304289 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1474 656 165 142 0 chr11 116540017 116540144 -5303712 - B1_Mm SINE Alu 0 147 3 6 1474 286 258 147 29 chr11 116540674 116540810 -5303046 - MER20 DNA MER1_type -66 153 2 6 1474 316 228 0 89 chr11 116543499 116543600 -5300256 - ID_B1 SINE B4 0 224 133 6 1474 989 202 10 39 chr11 116543621 116543827 -5300029 + B3 SINE B2 3 202 -14 6 1474 579 220 21 70 chr11 116544750 116544824 -5299032 - B1_Mur1 SINE Alu -13 136 70 6 1474 1610 42 10 5 chr11 116544824 116545016 -5298840 + B2_Mm1t SINE B2 1 193 0 7 1474 579 220 21 70 chr11 116545016 116545083 -5298773 - B1_Mur1 SINE Alu -80 69 2 6 1474 551 190 0 10 chr11 116545405 116545506 -5298350 - B1_Mm SINE Alu -34 113 14 7 1474 993 190 68 41 chr11 116546082 116546301 -5297555 - URR1B DNA MER1_type 0 225 1 7 1474 1219 41 0 39 chr11 116547899 116548052 -5295804 + B1_Mus2 SINE Alu 1 147 0 7 1474 812 218 0 0 chr11 116548081 116548228 -5295628 + B1_Mur1 SINE Alu 1 147 -2 7 1474 201 94 0 0 chr11 116548232 116548264 -5295592 + (CTA)n Simple_repeat Simple_repeat 1 32 0 7 1474 1407 70 0 36 chr11 116548283 116548476 -5295380 + B2_Mm2 SINE B2 2 187 -8 7 1474 400 320 84 38 chr11 116548493 116548756 -5295100 + ORR1E LTR MaLR 76 350 -9 7 1474 221 250 105 32 chr11 116549055 116549150 -5294706 - B2_Mm2 SINE B2 -1 194 93 7 1474 531 347 106 11 chr11 116549450 116549800 -5294056 - Tigger9b DNA MER2_type 0 624 242 7 1474 435 323 63 21 chr11 116550913 116551103 -5292753 + B3A SINE B2 1 198 0 8 1474 217 211 24 145 chr11 116551128 116551211 -5292645 + B4A SINE B4 7 79 -213 8 1474 484 278 138 7 chr11 116551140 116551292 -5292564 + B3A SINE B2 8 179 -19 8 1474 198 0 0 0 chr11 116551305 116551327 -5292529 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1474 182 254 26 66 chr11 116552040 116552116 -5291740 + MIRm SINE MIR 42 114 -162 8 1474 1600 37 0 40 chr11 116553135 116553334 -5290522 + B2_Mm1a SINE B2 2 192 -1 8 1474 584 215 7 37 chr11 116553406 116553541 -5290315 + ID_B1 SINE B4 94 224 0 8 1474 247 309 69 64 chr11 116553541 116553600 -5290256 - YREP_Mm Unknown Unknown -1496 289 112 8 1474 998 121 0 0 chr11 116553745 116553886 -5289970 - B1_Mus1 SINE Alu -3 145 5 8 1474 373 217 48 12 chr11 116554276 116554360 -5289496 - ID SINE ID -136 88 2 8 1474 1119 192 47 8 chr11 116554411 116554647 -5289209 + Lx9 LINE L1 7270 7514 -130 9 1474 242 229 14 0 chr11 116554649 116554719 -5289137 + (TA)n Simple_repeat Simple_repeat 2 72 0 9 1474 525 202 56 34 chr11 116554720 116554899 -5288957 + Lx9 LINE L1 7461 7643 -1 9 1474 354 227 159 26 chr11 116557117 116557230 -5286626 - RSINE1 SINE B4 -36 129 2 9 1474 710 221 131 11 chr11 116557796 116557979 -5285877 + ID_B1 SINE B4 2 206 -18 9 1474 363 182 13 13 chr11 116558069 116558147 -5285709 - B1F1 SINE Alu -1 148 71 9 1474 331 244 187 0 chr11 116558173 116558296 -5285560 + MTE2a LTR MaLR 234 379 0 9 1474 939 151 7 0 chr11 116558334 116558473 -5285383 + B1_Mur2 SINE Alu 3 142 -7 9 1474 532 314 131 76 chr11 116558513 116558985 -5284871 - LTR40a LTR ERVL -20 499 2 9 1474 457 238 153 7 chr11 116559162 116559306 -5284550 + RSINE1 SINE B4 1 165 0 9 1474 885 119 22 0 chr11 116559730 116559864 -5283992 - B1_Mur4 SINE Alu -7 143 7 1 1474 1127 205 9 14 chr11 116559878 116560091 -5283765 - B3 SINE B2 -4 212 1 1 1474 186 43 0 0 chr11 116560348 116560371 -5283485 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1474 379 125 0 6 chr11 116560402 116560467 -5283389 - B2_Mm2 SINE B2 -107 109 47 1 1474 324 0 0 0 chr11 116560505 116560541 -5283315 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 1474 1163 76 0 0 chr11 116560543 116560688 -5283168 - B2_Mm2 SINE B2 -50 145 1 1 1474 236 28 56 0 chr11 116560773 116560809 -5283047 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1474 22 0 0 0 chr11 116560822 116560844 -5283012 + AT_rich Low_complexity Low_complexity 1 22 0 1 1474 233 200 0 0 chr11 116560871 116560926 -5282930 + L1MB2 LINE L1 5761 5815 -365 1 1474 324 272 107 2 chr11 116560967 116561076 -5282780 + B3A SINE B2 56 176 -40 1 1474 860 135 15 0 chr11 116561096 116561229 -5282627 - B1_Mus1 SINE Alu 0 148 14 1 1474 506 16 0 16 chr11 116561246 116561310 -5282546 + (GAA)n Simple_repeat Simple_repeat 1 63 0 1 1474 614 290 90 10 chr11 116561312 116561514 -5282342 + B3A SINE B2 1 210 -6 1 1474 351 0 0 0 chr11 116561514 116561553 -5282303 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1474 409 238 195 51 chr11 116561553 116561776 -5282080 + L1MB2 LINE L1 5821 6083 -88 1 1474 1310 89 39 0 chr11 116561776 116561956 -5281900 - B2_Mm2 SINE B2 -8 187 1 1 1474 409 238 195 51 chr11 116561956 116562024 -5281832 + L1MB2 LINE L1 6084 6154 -17 1 1474 1253 171 24 5 chr11 116562042 116562254 -5281602 + B3 SINE B2 1 216 0 1 1474 758 220 75 0 chr11 116562302 116562475 -5281381 - B3 SINE B2 -28 188 3 1 1474 867 253 137 89 chr11 116562529 116563011 -5280845 + RMER5 LTR ERV1 16 520 -14 1 1474 425 249 50 79 chr11 116563068 116563308 -5280548 - L1MD1 LINE L1 -79 6163 5931 1 1474 203 88 0 29 chr11 116563351 116563386 -5280470 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1474 604 236 0 8 chr11 116563390 116563514 -5280342 - RSINE1 SINE B4 -29 136 14 1 1474 918 167 0 0 chr11 116563609 116563759 -5280097 - B1_Mur4 SINE Alu 0 150 1 1 1474 304 54 0 0 chr11 116563826 116563863 -5279993 + RMER6A LTR ERVK 1 37 -424 1 1474 2422 124 86 16 chr11 116563868 116564311 -5279545 + RMER6A LTR ERVK 234 707 -49 1 1474 2878 138 82 61 chr11 116564458 116564877 -5278979 + RLTR33 LTR ERVK 1 441 -237 1 1474 3672 60 2 0 chr11 116564877 116565324 -5278532 - L1_Mus1 LINE L1 0 6567 6120 1 1474 2878 138 82 61 chr11 116565324 116565428 -5278428 + RLTR33 LTR ERVK 442 535 -143 1 1474 1258 99 5 37 chr11 116565441 116565630 -5278226 + B2_Mm1t SINE B2 1 183 -10 1 1474 749 44 0 0 chr11 116565641 116565732 -5278124 - BC1_Mm scRNA scRNA -60 92 2 1 1474 593 307 7 13 chr11 116565733 116565888 -5277968 + RLTR33 LTR ERVK 525 678 0 1 1474 350 130 0 0 chr11 116565888 116565941 -5277915 + RMER6C LTR ERVK 637 689 -1 1 1474 482 200 128 60 chr11 116566020 116566137 -5277719 - ID_B1 SINE B4 -51 173 49 1 1474 3723 155 143 5 chr11 116566140 116566880 -5276976 - RMER21B LTR ERV1 0 842 1 1 1474 364 245 0 10 chr11 116566931 116567030 -5276826 - L1MD1 LINE L1 -947 5412 5315 1 1474 1241 48 0 0 chr11 116567079 116567225 -5276631 - B1_Mm SINE Alu -1 146 1 1 1474 323 299 118 19 chr11 116567292 116567503 -5276353 - L1MD1 LINE L1 -883 5263 5032 1 1474 248 276 306 8 chr11 116567532 116567656 -5276200 - RSINE1 SINE B4 -2 163 3 1 1474 188 67 0 32 chr11 116568216 116568247 -5275609 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 1 1474 598 219 48 24 chr11 116568247 116568373 -5275483 - B1_Mur4 SINE Alu -21 129 1 1 1474 361 288 16 56 chr11 116568273 116568398 -5275458 - MT2B LTR ERVL -344 257 138 1 1474 404 108 122 0 chr11 116568664 116568738 -5275118 - B1F SINE Alu 0 149 67 1 1474 604 149 74 9 chr11 116568747 116568855 -5275001 - B1_Mus2 SINE Alu -7 140 26 1 1474 1221 181 0 58 chr11 116568901 116569124 -5274732 + B3 SINE B2 1 210 -6 1 1474 1737 21 0 0 chr11 116569202 116569394 -5274462 - B2_Mm1a SINE B2 -1 192 1 1 1474 276 260 0 76 chr11 116569571 116569650 -5274206 - ID SINE ID -145 79 7 1 1474 2508 116 109 39 chr11 116569683 116569883 -5273973 + RMER16 LTR ERVK 70 275 -258 1 1474 1209 43 0 0 chr11 116569883 116570021 -5273835 + B1_Mm SINE Alu 1 138 -9 1 1474 1078 86 0 18 chr11 116570021 116570187 -5273669 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1 1474 2508 116 109 39 chr11 116570187 116570417 -5273439 + RMER16 LTR ERVK 276 530 -3 1 1474 647 262 0 39 chr11 116570459 116570614 -5273242 - B1F1 SINE Alu 0 149 1 1 1474 311 329 69 52 chr11 116570614 116570845 -5273011 + L1MC5 LINE L1 7678 7912 -49 1 1474 328 272 152 82 chr11 116570900 116570924 -5272932 + MT2B LTR ERVL 135 217 -384 1 1474 600 189 31 62 chr11 116570924 116571054 -5272802 + B1_Mur1 SINE Alu 2 127 -22 1 1474 328 272 152 82 chr11 116571054 116571084 -5272772 + MT2B LTR ERVL 218 331 -270 1 1474 514 152 180 10 chr11 116571163 116571263 -5272593 + B1_Mur2 SINE Alu 30 146 -3 1 1474 25 31 0 0 chr11 116571383 116571415 -5272441 + AT_rich Low_complexity Low_complexity 1 32 0 1 1474 262 0 53 0 chr11 116571428 116571466 -5272390 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1474 959 241 103 117 chr11 116572195 116572559 -5271297 - MTEa LTR MaLR -15 364 1 1 1474 193 130 0 61 chr11 116572601 116572650 -5271206 + CT-rich Low_complexity Low_complexity 3 48 0 1 1474 456 211 11 0 chr11 116572650 116572745 -5271111 - ID_B1 SINE B4 0 224 129 1 1474 249 202 34 168 chr11 116572653 116572772 -5271084 - PB1 SINE Alu -2 125 23 1 1474 565 283 34 48 chr11 116573315 116573490 -5270366 - ORR1D2 LTR MaLR -74 310 131 1 1474 1115 134 6 28 chr11 116573491 116573653 -5270203 + B2_Mm1a SINE B2 2 164 -29 1 1474 243 0 0 0 chr11 116573653 116573680 -5270176 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1474 1115 134 6 28 chr11 116573680 116573694 -5270162 + B2_Mm1a SINE B2 165 174 -19 1 1474 431 254 25 157 chr11 116573699 116573805 -5270051 - ORR1D2 LTR MaLR -232 138 49 1 1474 2877 43 0 34 chr11 116573805 116574163 -5269693 - ORR1A1 LTR MaLR 0 346 1 1 1474 431 254 25 157 chr11 116574163 116574215 -5269641 - ORR1D2 LTR MaLR -322 48 1 1 1474 2832 253 75 25 chr11 116576433 116577459 -5266397 - MurERV4-int LTR ERVK -144 5116 4040 1 1474 1589 47 5 0 chr11 116577606 116577797 -5266059 - B2_Mm1t SINE B2 0 193 2 1 1474 444 189 22 0 chr11 116577814 116577904 -5265952 - MurERV4-int LTR ERVK -2377 2984 2893 1 1474 276 303 60 72 chr11 116577904 116578139 -5265717 - RMER17C LTR ERVK -38 372 141 1 1474 5387 188 57 40 chr11 116578226 116579397 -5264459 - RMER12 LTR ERVK -131 1191 1 1 1474 283 44 44 0 chr11 116579397 116579442 -5264414 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1474 330 231 0 71 chr11 116579572 116579597 -5264259 - MurERV4-int LTR ERVK -2458 2903 2884 1 1474 3858 53 51 4 chr11 116579597 116580086 -5263770 - RLTR1B LTR ERV1 0 512 1 1 1474 330 231 0 71 chr11 116580086 116580144 -5263712 - MurERV4-int LTR ERVK -2478 2883 2826 1 1474 490 205 82 0 chr11 116580186 116580308 -5263548 - MurERV4-int LTR ERVK -2700 2661 2530 1 1474 243 0 0 0 chr11 116580410 116580437 -5263419 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1474 1520 237 103 30 chr11 116581427 116581931 -5261925 - RLTR20A LTR ERVK 0 541 1 1 1474 271 196 0 0 chr11 116581948 116581994 -5261862 + RSINE1 SINE B4 84 129 -36 1 1474 303 228 120 0 chr11 116582026 116582118 -5261738 + RMER15 LTR ERVL 279 381 -194 1 1474 286 292 147 25 chr11 116582214 116582411 -5261445 + RLTR12B LTR ERVK 243 463 -65 1 1474 1275 27 0 0 chr11 116582411 116582558 -5261298 + B1_Mm SINE Alu 1 147 0 1 1474 324 107 58 0 chr11 116582558 116582661 -5261195 + A-rich Low_complexity Low_complexity 3 111 0 1 1474 327 294 20 33 chr11 116583503 116583718 -5260138 + B4 SINE B4 1 277 -15 1 1474 198 71 0 0 chr11 116583720 116583748 -5260108 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1474 317 199 19 150 chr11 116584092 116584235 -5259621 + MLT1H LTR MaLR 13 171 -378 1 1474 437 276 122 32 chr11 116584381 116584602 -5259254 - RMER20A LTR ERVK -145 371 131 1 1474 6508 171 50 19 chr11 116584784 116585238 -5258618 + RMER12B LTR ERVK 1 464 -940 1 1474 1459 68 16 0 chr11 116585238 116585428 -5258428 + B2_Mm1t SINE B2 1 193 0 1 1474 6508 173 53 20 chr11 116585428 116586227 -5257629 + RMER12B LTR ERVK 465 1275 -129 1 1474 1234 233 116 75 chr11 116586852 116587292 -5256564 - RMER13A LTR ERVK -402 458 1 1 1474 509 242 128 0 chr11 116587293 116587320 -5256536 + RMER12B LTR ERVK 1227 1254 -150 1 1474 1017 24 0 0 chr11 116587320 116587444 -5256412 + (TG)n Simple_repeat Simple_repeat 1 124 0 1 1474 509 242 128 0 chr11 116587444 116587565 -5256291 + RMER12B LTR ERVK 1255 1393 -11 1 1474 436 281 334 0 chr11 116588022 116588232 -5255624 - B4A SINE B4 -2 290 10 1 1474 475 256 49 49 chr11 116588480 116588644 -5255212 + RSINE1 SINE B4 2 165 0 1 1474 195 42 0 0 chr11 116588670 116588694 -5255162 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1 1474 22 0 0 0 chr11 116588797 116588819 -5255037 + AT_rich Low_complexity Low_complexity 1 22 0 1 1474 332 250 40 10 chr11 116588984 116589085 -5254771 + B3 SINE B2 1 104 -112 1 1474 268 212 102 91 chr11 116589081 116589169 -5254687 + ID_B1 SINE B4 116 204 -20 1 1474 431 176 11 0 chr11 116589172 116589263 -5254593 + GA-rich Low_complexity Low_complexity 3 94 0 1 1474 898 249 90 50 chr11 116589717 116590017 -5253839 + MTEa LTR MaLR 31 342 -37 1 1474 667 142 9 0 chr11 116590020 116590126 -5253730 + B1_Mur3 SINE Alu 41 147 -2 1 1474 21 0 0 0 chr11 116590287 116590308 -5253548 + AT_rich Low_complexity Low_complexity 1 21 0 1 1474 568 282 50 31 chr11 116590372 116590533 -5253323 - RSINE1 SINE B4 0 165 2 1 1474 673 284 20 31 chr11 116590539 116590735 -5253121 - B3A SINE B2 -4 194 1 1 1474 252 250 122 23 chr11 116590854 116590985 -5252871 - MER31-int LTR ERV1 -2092 2844 2701 1 1474 1536 154 61 124 chr11 116591495 116591728 -5252128 - ORR1B1 LTR MaLR 0 394 197 1 1474 5701 82 25 32 chr11 116591728 116592542 -5251314 + RLTR13C2 LTR ERVK 1 808 0 1 1474 1536 154 61 124 chr11 116592542 116592686 -5251170 - ORR1B1 LTR MaLR -198 196 41 1 1474 1168 63 14 0 chr11 116592723 116592865 -5250991 + B1_Mm SINE Alu 4 147 0 1 1474 261 83 0 0 chr11 116593006 116593042 -5250814 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 1 1474 634 212 9 0 chr11 116593055 116593168 -5250688 - B1F2 SINE Alu -9 140 27 1 1474 297 0 0 0 chr11 116593187 116593220 -5250636 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1474 532 241 88 22 chr11 116593221 116593357 -5250499 - RSINE1 SINE B4 -18 147 3 1 1474 857 65 297 0 chr11 116593496 116593634 -5250222 + B2_Mm1t SINE B2 1 179 -14 1 1474 378 124 0 5 chr11 116593647 116593712 -5250144 + B2_Mm2 SINE B2 47 109 -107 2 1474 361 263 61 31 chr11 116593710 116593808 -5250048 - B3 SINE B2 -47 169 69 2 1474 180 0 0 0 chr11 116594262 116594282 -5249574 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2 1474 1533 53 11 0 chr11 116594282 116594470 -5249386 - B2_Mm1a SINE B2 -2 191 2 2 1474 321 18 52 35 chr11 116594476 116594534 -5249322 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2 1474 1369 83 0 20 chr11 116594535 116594732 -5249124 + B2_Mm2 SINE B2 1 193 -2 2 1474 1378 73 17 6 chr11 116594732 116594912 -5248944 - B2_Mm2 SINE B2 -11 184 3 2 1474 431 265 0 12 chr11 116595165 116595333 -5248523 + CT-rich Low_complexity Low_complexity 1 166 0 2 1474 605 93 38 15 chr11 116595501 116595632 -5248224 + (CA)n Simple_repeat Simple_repeat 2 135 0 2 1474 354 177 50 6 chr11 116595707 116595866 -5247990 + (CA)n Simple_repeat Simple_repeat 2 167 0 2 1474 29 0 0 0 chr11 116595914 116595943 -5247913 + AT_rich Low_complexity Low_complexity 1 29 0 2 1474 987 42 0 0 chr11 116595979 116596098 -5247758 + B1_Mus2 SINE Alu 23 141 -6 2 1474 901 130 0 0 chr11 116596116 116596247 -5247609 - B1_Mur4 SINE Alu -13 137 7 2 1474 252 265 18 12 chr11 116596373 116596541 -5247315 + (CATATA)n Simple_repeat Simple_repeat 6 174 0 2 1474 534 302 0 43 chr11 116596544 116596789 -5247067 + (CATA)n Simple_repeat Simple_repeat 1 234 0 2 1474 778 262 0 0 chr11 116596918 116597063 -5246793 + B1F2 SINE Alu 4 148 -1 2 1474 1412 259 59 94 chr11 116597261 116598003 -5245853 - RMER6D LTR ERVK -4 716 1 2 1474 678 321 6 0 chr11 116598007 116598169 -5245687 - B3A SINE B2 -34 164 2 2 1474 275 215 228 14 chr11 116598250 116598335 -5245521 - PB1D10 SINE Alu -12 108 6 2 1474 618 200 9 0 chr11 116598404 116598519 -5245337 - B1_Mur1 SINE Alu 0 149 34 2 1474 319 312 154 12 chr11 116598519 116598681 -5245175 - L1M5 LINE L1 -1377 4769 4585 2 1474 675 221 69 0 chr11 116598770 116598901 -5244955 - B3 SINE B2 -75 141 2 2 1474 2425 134 38 8 chr11 116598917 116599315 -5244541 - MTC LTR MaLR -8 413 4 2 1474 797 155 0 15 chr11 116599398 116599529 -5244327 - B1_Mur4 SINE Alu -1 149 21 2 1474 289 246 79 118 chr11 116599434 116599586 -5244270 - MT2B LTR ERVL -337 264 119 2 1474 626 302 61 56 chr11 116599567 116599781 -5244075 - B3A SINE B2 0 216 2 2 1474 2318 156 18 8 chr11 116601883 116602265 -5241591 - ORR1B1 LTR MaLR -8 386 1 2 1474 340 262 12 12 chr11 116604076 116604161 -5239695 + B4A SINE B4 2 86 -206 2 1474 262 261 63 32 chr11 116604089 116604184 -5239672 + BC1_Mm scRNA scRNA 16 113 -39 2 1474 539 294 146 5 chr11 116604213 116604398 -5239458 - B4A SINE B4 -43 249 39 2 1474 3557 25 0 0 chr11 116604400 116604796 -5239060 + MTA_Mm LTR MaLR 1 396 0 2 1474 8720 45 1 1 chr11 116604796 116605876 -5237980 + MTA_Mm-int LTR MaLR 1 1080 -18 2 1474 2838 26 44 0 chr11 116605872 116606215 -5237641 + MTA_Mm LTR MaLR 39 396 0 2 1474 297 149 53 40 chr11 116606870 116607176 -5236680 + (TG)n Simple_repeat Simple_repeat 1 310 0 2 1474 279 144 57 46 chr11 116607199 116607374 -5236482 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 1474 268 145 55 44 chr11 116607397 116607676 -5236180 + (TG)n Simple_repeat Simple_repeat 1 282 0 2 1474 395 172 52 52 chr11 116607699 116607871 -5235985 + (TG)n Simple_repeat Simple_repeat 1 172 0 2 1474 923 285 77 0 chr11 116607932 116608192 -5235664 - B4 SINE B4 -5 287 8 2 1474 207 0 0 0 chr11 116608220 116608243 -5235613 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1474 3461 45 0 0 chr11 116608802 116609198 -5234658 - MTA_Mm LTR MaLR 0 396 1 2 1474 320 248 25 76 chr11 116609358 116609476 -5234380 - YREP_Mm Unknown Unknown -1478 334 223 2 1474 526 234 10 12 chr11 116609389 116609501 -5234355 + PB1D10 SINE Alu 10 125 -189 2 1474 765 197 10 0 chr11 116609501 116609987 -5233869 + (TCTA)n Simple_repeat Simple_repeat 1 491 0 2 1474 377 203 12 60 chr11 116610024 116610108 -5233748 - ID4 SINE ID -2 81 2 2 1474 590 158 90 66 chr11 116610762 116610884 -5232972 + B1_Mur3 SINE Alu 14 138 -11 2 1474 480 321 29 76 chr11 116611491 116611722 -5232134 + B4A SINE B4 5 235 -57 2 1474 205 211 0 66 chr11 116612056 116612132 -5231724 + G-rich Low_complexity Low_complexity 1 71 0 2 1474 333 293 92 36 chr11 116612409 116612604 -5231252 - RMER20B LTR ERVK -242 385 180 2 1474 203 175 25 0 chr11 116612823 116612863 -5230993 + CT-rich Low_complexity Low_complexity 1 41 0 2 1474 352 258 63 21 chr11 116612928 116613023 -5230833 + RMER10A LTR ERVL 319 417 -25 2 1474 513 68 0 0 chr11 116613229 116613303 -5230553 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 2 1474 579 153 113 15 chr11 116613371 116613504 -5230352 - B1_Mur4 SINE Alu -2 148 3 2 1474 189 0 0 0 chr11 116613739 116613760 -5230096 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2 1474 285 229 99 18 chr11 116614772 116614883 -5228973 + RLTR6-int LTR ERV1 1338 1457 -6321 2 1474 319 333 18 29 chr11 116614951 116615224 -5228632 + RLTR4_MM-int LTR ERV1 1324 1737 -5819 2 1474 194 301 40 14 chr11 116615591 116615665 -5228191 - L3b LINE CR1 -15 467 392 2 1474 889 309 49 24 chr11 116616154 116616648 -5227208 + RLTR4_MM-int LTR ERV1 2633 3273 -4505 2 1474 1186 140 11 0 chr11 116616823 116617001 -5226855 + B2_Mm1t SINE B2 2 181 -12 2 1474 298 97 410 19 chr11 116617051 116617156 -5226700 + B2_Mm2 SINE B2 48 193 -2 2 1474 591 346 37 42 chr11 116617190 116617785 -5226071 + RLTR4_MM-int LTR ERV1 3362 3953 -3653 2 1474 656 189 15 8 chr11 116617787 116617920 -5225936 + RLTR19-int LTR ERVK 2528 2661 -3476 2 1474 3128 214 28 15 chr11 116617936 116618685 -5225171 + RLTR19-int LTR ERVK 3581 4339 -1798 2 1474 2499 192 44 9 chr11 116619438 116619964 -5223892 - RLTR14-int LTR ERV1 -2741 2576 2033 2 1474 260 154 0 0 chr11 116620188 116620227 -5223629 - B2_Mm2 SINE B2 -156 39 1 2 1474 421 253 69 62 chr11 116620227 116620356 -5223500 - RLTR11A2 LTR ERVK -379 148 19 2 1474 535 220 219 6 chr11 116620357 116620517 -5223339 - MER67C LTR ERV1 -23 688 495 2 1474 220 310 17 0 chr11 116620579 116620637 -5223219 + ID_B1 SINE B4 88 146 -78 2 1474 2623 101 116 36 chr11 116620711 116621151 -5222705 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1474 4920 47 0 63 chr11 116621152 116621850 -5222006 + IAPEz-int LTR ERVK 9 662 -5819 2 1474 965 42 0 0 chr11 116621850 116621969 -5221887 + IAPEz-int LTR ERVK 1359 1477 -5004 2 1474 1795 93 0 0 chr11 116621970 116622216 -5221640 + IAPEz-int LTR ERVK 2252 2497 -5183 2 1474 900 80 24 0 chr11 116622211 116622336 -5221520 + IAPEz-int LTR ERVK 4783 4910 -2770 2 1474 25679 13 2 0 chr11 116622336 116625286 -5218570 + IAPEz-int LTR ERVK 3525 6481 0 2 1474 2389 101 121 38 chr11 116625286 116625709 -5218147 + IAPLTR2_Mm LTR ERVK 1 458 -17 2 1474 195 308 0 44 chr11 116625831 116625899 -5217957 + L2 LINE L2 2880 2944 -475 2 1474 511 259 120 31 chr11 116626093 116626284 -5217572 + B3 SINE B2 1 208 -8 2 1474 449 205 0 12 chr11 116626421 116626505 -5217351 - ID_B1 SINE B4 -1 223 141 2 1474 384 22 0 0 chr11 116626550 116626595 -5217261 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1474 197 33 0 32 chr11 116626843 116626874 -5216982 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1474 287 191 47 16 chr11 116626874 116626938 -5216918 - B1_Mus2 SINE Alu -14 133 68 2 1474 2388 142 18 8 chr11 116628552 116628934 -5214922 - ORR1B1 LTR MaLR -8 386 1 2 1474 260 310 0 54 chr11 116630745 116630837 -5213019 + B4 SINE B4 3 89 -203 2 1474 568 296 137 5 chr11 116630878 116631082 -5212774 - B4A SINE B4 -43 249 19 2 1474 333 142 34 47 chr11 116631705 116631853 -5212003 + (TG)n Simple_repeat Simple_repeat 1 146 0 2 1474 334 193 46 46 chr11 116631864 116632038 -5211818 + (TG)n Simple_repeat Simple_repeat 2 175 0 2 1474 787 284 42 39 chr11 116632044 116632330 -5211526 - B4 SINE B4 -5 287 1 2 1474 229 272 165 0 chr11 116632365 116632468 -5211388 - PB1D9 SINE Alu 0 120 1 2 1474 533 229 0 10 chr11 116633110 116633207 -5210649 + PB1D10 SINE Alu 9 104 -13 2 1474 531 211 0 4 chr11 116633255 116633748 -5210108 + (TCTA)n Simple_repeat Simple_repeat 1 490 0 2 1474 410 190 12 60 chr11 116633762 116633846 -5210010 - ID4 SINE ID -2 81 2 2 1474 584 224 95 0 chr11 116634479 116634595 -5209261 + B1_Mur3 SINE Alu 14 140 -9 2 1474 1236 232 40 16 chr11 116634644 116635049 -5208807 + RLTR33 LTR ERVK 175 633 -45 2 1474 182 322 149 0 chr11 116635271 116635358 -5208498 + L2 LINE L2 84 183 -3236 2 1474 377 272 0 0 chr11 116635408 116635489 -5208367 + ID_B1 SINE B4 90 170 -54 2 1474 256 325 38 53 chr11 116635489 116635540 -5208316 + B1_Mus1 SINE Alu 10 139 -9 2 1474 627 214 155 44 chr11 116635779 116635960 -5207896 - ID_B1 SINE B4 0 224 24 2 1474 180 0 0 0 chr11 116636921 116636941 -5206915 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1474 700 238 0 7 chr11 116637220 116637364 -5206492 + B3 SINE B2 2 144 -72 2 1474 288 53 0 0 chr11 116637364 116637402 -5206454 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1474 271 250 29 0 chr11 116637405 116637473 -5206383 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 2 1474 524 287 118 75 chr11 116637710 116637989 -5205867 + B4 SINE B4 2 292 0 2 1474 342 229 0 0 chr11 116637989 116638085 -5205771 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 1474 711 246 0 0 chr11 116638476 116638823 -5205033 + (TG)n Simple_repeat Simple_repeat 1 347 0 2 1474 313 229 56 103 chr11 116638941 116639048 -5204808 + B4 SINE B4 1 102 -190 2 1474 299 291 97 26 chr11 116639064 116639177 -5204679 + RSINE1 SINE B4 2 122 -43 2 1474 564 175 41 0 chr11 116639220 116639317 -5204539 + B4 SINE B4 83 183 -109 2 1474 269 343 48 0 chr11 116639750 116639855 -5204001 + B4 SINE B4 183 292 0 2 1474 233 214 0 0 chr11 116639863 116639905 -5203951 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1474 1172 29 43 0 chr11 116639965 116640105 -5203751 + B1_Mm SINE Alu 2 147 0 2 1474 249 33 0 0 chr11 116640105 116640135 -5203721 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1474 4184 145 73 42 chr11 116640478 116640986 -5202870 - RMER13B LTR ERVK -125 783 257 2 1474 1497 64 0 16 chr11 116640986 116641177 -5202679 - B2_Mm1a SINE B2 -4 189 2 2 1474 4184 145 73 42 chr11 116641177 116641426 -5202430 - RMER13B LTR ERVK -652 256 3 2 1474 313 303 67 71 chr11 116641766 116641861 -5201995 + RMER10A LTR ERVL 10 100 -342 2 1474 1303 106 16 21 chr11 116641861 116642053 -5201803 + B2_Mm2 SINE B2 2 192 -3 2 1474 313 303 67 71 chr11 116642053 116642195 -5201661 + RMER10A LTR ERVL 101 246 -196 2 1474 791 147 179 11 chr11 116642690 116642869 -5200987 + B3 SINE B2 1 209 -7 3 1474 238 184 0 0 chr11 116643182 116643231 -5200625 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1474 284 135 89 71 chr11 116643261 116643317 -5200539 - B4A SINE B4 -24 268 212 3 1474 442 314 102 24 chr11 116643352 116643629 -5200227 - B4 SINE B4 0 292 2 3 1474 351 163 347 0 chr11 116643629 116643723 -5200133 - B4A SINE B4 -62 230 103 3 1474 1242 97 43 11 chr11 116643763 116643951 -5199905 + B2_Mm2 SINE B2 2 195 0 3 1474 217 200 0 0 chr11 116644110 116644145 -5199711 + (CGGGG)n Simple_repeat Simple_repeat 5 39 0 3 1474 431 228 29 19 chr11 116644389 116644492 -5199364 - B4 SINE B4 -188 104 1 3 1474 273 140 0 0 chr11 116644521 116644571 -5199285 - B3 SINE B2 0 216 167 3 1474 1271 81 46 11 chr11 116644690 116644865 -5198991 + B2_Mm2 SINE B2 1 181 -14 3 1474 948 135 7 20 chr11 116644888 116645039 -5198817 + B1_Mur1 SINE Alu 1 149 0 3 1474 222 70 44 44 chr11 116645040 116645085 -5198771 + A-rich Low_complexity Low_complexity 3 47 0 3 1474 364 157 0 14 chr11 116645790 116645861 -5197995 - MER67C LTR ERV1 -24 687 618 3 1474 235 204 0 39 chr11 116645999 116646050 -5197806 + B1F SINE Alu 7 55 -94 3 1474 310 319 19 127 chr11 116646219 116646377 -5197479 + RLTR24 LTR ERV1 332 472 -57 3 1474 1771 105 13 80 chr11 116646365 116646666 -5197190 + ORR1A4 LTR MaLR 5 285 -44 3 1474 848 221 98 0 chr11 116646741 116646904 -5196952 + B3 SINE B2 1 179 -37 3 1474 3139 30 3 5 chr11 116646907 116647275 -5196581 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1474 54295 21 16 1 chr11 116647275 116653650 -5190206 + IAPEz-int LTR ERVK 8 6481 0 3 1474 3139 30 3 5 chr11 116653650 116654018 -5189838 + IAPLTR1_Mm LTR ERVK 1 367 0 3 184 360 143 0 0 chr11 116654033 116654089 -5189767 + ORR1A4 LTR MaLR 274 329 0 3 1475 574 239 174 0 chr11 116654157 116654324 -5189532 + B3 SINE B2 7 202 -14 3 1475 920 210 75 57 chr11 116654622 116654834 -5189022 + B3 SINE B2 1 216 0 3 1475 831 229 78 24 chr11 116654845 116655095 -5188761 - MTE2a LTR MaLR -43 336 77 3 1475 1351 75 11 0 chr11 116655282 116655469 -5188387 - ORR1A4 LTR MaLR -140 189 1 3 1475 265 165 56 112 chr11 116655626 116655715 -5188141 - RLTR28B LTR ERVL -24 500 417 3 1475 180 97 0 0 chr11 116655781 116655812 -5188044 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1475 1114 51 0 0 chr11 116655812 116655950 -5187906 - B1_Mm SINE Alu 0 147 10 3 1475 702 177 248 28 chr11 116655958 116656208 -5187648 - RLTR28B LTR ERVL -176 305 1 3 1475 579 216 72 0 chr11 116656243 116656354 -5187502 + RSINE1 SINE B4 4 122 -43 3 1475 261 0 0 0 chr11 116656358 116656387 -5187469 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1475 625 256 168 0 chr11 116656599 116656790 -5187066 + ID_B1 SINE B4 2 224 0 3 1475 320 151 0 40 chr11 116656790 116656827 -5187029 + A-rich Low_complexity Low_complexity 1 35 0 3 1475 864 144 13 27 chr11 116656827 116656977 -5186879 + B1_Mus1 SINE Alu 1 148 0 3 1475 320 151 0 40 chr11 116656977 116657015 -5186841 + A-rich Low_complexity Low_complexity 36 73 0 3 1475 536 256 227 0 chr11 116657558 116657734 -5186122 + B4A SINE B4 2 217 -75 3 1475 712 275 0 0 chr11 116657842 116657991 -5185865 + B3A SINE B2 1 149 -49 3 1475 600 115 0 0 chr11 116657994 116658098 -5185758 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1475 552 186 41 0 chr11 116658098 116658195 -5185661 + B1_Mur1 SINE Alu 48 148 -1 3 1475 441 187 121 18 chr11 116658319 116658448 -5185408 + B3 SINE B2 1 142 -56 3 1475 664 24 0 0 chr11 116659373 116659458 -5184398 + L1Md_A LINE L1 6498 6582 0 3 1475 3928 20 38 0 chr11 116659888 116660337 -5183519 + L1Md_F2 LINE L1 6115 6580 -2 3 1475 678 242 0 36 chr11 116660373 116660510 -5183346 - B1_Mur1 SINE Alu -5 144 13 3 1475 330 277 32 89 chr11 116660400 116660523 -5183333 - MT2B LTR ERVL -325 276 161 3 1475 200 31 62 0 chr11 116660561 116660593 -5183263 + (TATG)n Simple_repeat Simple_repeat 4 37 0 3 1475 656 231 0 0 chr11 116660593 116660710 -5183146 - RSINE1 SINE B4 -33 132 16 3 1475 1246 171 5 33 chr11 116661055 116661267 -5182589 + B3 SINE B2 1 206 -10 3 1475 1730 21 0 0 chr11 116661293 116661486 -5182370 - B2_Mm1t SINE B2 0 193 1 3 1475 381 182 15 0 chr11 116661517 116661583 -5182273 + B1_Mur4 SINE Alu 2 68 -82 3 1475 260 317 89 24 chr11 116661588 116661711 -5182145 + B3A SINE B2 67 197 -1 3 1475 832 162 29 22 chr11 116661775 116661914 -5181942 + B1_Mur3 SINE Alu 3 142 -7 3 1475 1292 91 28 0 chr11 116661957 116662133 -5181723 + B2_Mm1t SINE B2 1 181 -12 3 1475 294 29 0 0 chr11 116662133 116662168 -5181688 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1475 252 77 0 0 chr11 116662793 116662832 -5181024 + (GGTTG)n Simple_repeat Simple_repeat 2 40 0 3 1475 631 257 20 70 chr11 116662838 116663039 -5180817 - B3A SINE B2 -6 192 2 3 1475 22 0 0 0 chr11 116663068 116663090 -5180766 + AT_rich Low_complexity Low_complexity 1 22 0 3 1475 637 236 25 19 chr11 116663090 116663250 -5180606 - RSINE1 SINE B4 0 165 5 3 1475 404 118 15 0 chr11 116663252 116663320 -5180536 + (TCC)n Simple_repeat Simple_repeat 3 71 0 3 1475 414 227 52 52 chr11 116663321 116663334 -5180522 - B1_Mur2 SINE Alu 0 149 138 3 1475 303 28 0 0 chr11 116663334 116663370 -5180486 + (TAG)n Simple_repeat Simple_repeat 3 38 0 3 1475 414 227 52 52 chr11 116663370 116663472 -5180384 - B1_Mur2 SINE Alu -12 137 35 3 1475 236 282 54 76 chr11 116663488 116663580 -5180276 - B3 SINE B2 -5 211 122 3 1475 604 336 54 15 chr11 116663547 116663624 -5180232 - B4A SINE B4 -8 284 202 3 1475 270 0 0 0 chr11 116663624 116663654 -5180202 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1475 604 336 54 15 chr11 116663654 116663836 -5180020 - B4A SINE B4 -91 201 16 3 1475 1398 304 19 0 chr11 116663859 116664224 -5179632 - MTEa LTR MaLR -7 372 1 3 1475 638 249 15 56 chr11 116664390 116664586 -5179270 - B3A SINE B2 -6 192 5 3 1475 439 128 23 0 chr11 116664593 116664679 -5179177 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1475 1038 96 7 0 chr11 116664774 116664920 -5178936 + B1_Mus1 SINE Alu 2 148 0 3 1475 189 281 0 81 chr11 116665937 116665999 -5177857 + L3b LINE CR1 177 233 -249 3 1475 651 201 7 101 chr11 116666790 116666939 -5176917 - B1_Mur3 SINE Alu -8 141 7 3 1475 280 213 15 206 chr11 116666820 116666956 -5176900 - MT2B LTR ERVL -337 264 155 3 1475 216 97 0 0 chr11 116667316 116667347 -5176509 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3 1475 339 191 18 27 chr11 116667375 116667483 -5176373 - B1_Mur1 SINE Alu -7 142 1 3 1475 1026 245 14 5 chr11 116667506 116667719 -5176137 - B3 SINE B2 0 216 2 3 1475 198 103 0 0 chr11 116667831 116667860 -5175996 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1475 204 67 0 0 chr11 116668294 116668324 -5175532 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1475 1356 44 0 0 chr11 116668715 116668895 -5174961 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1475 225 0 0 0 chr11 116669603 116669628 -5174228 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1475 320 364 8 76 chr11 116670668 116670799 -5173057 - RSINE1 SINE B4 -29 136 15 3 1475 193 202 40 0 chr11 116672690 116672789 -5171067 + (CAGAG)n Simple_repeat Simple_repeat 2 104 0 3 1475 243 0 0 0 chr11 116673364 116673391 -5170465 + (G)n Simple_repeat Simple_repeat 1 27 0 3 1475 276 30 0 0 chr11 116673429 116673462 -5170394 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1475 362 206 29 14 chr11 116673463 116673532 -5170324 - ID4_ SINE ID -12 71 2 3 1475 23 0 0 0 chr11 116673567 116673590 -5170266 + AT_rich Low_complexity Low_complexity 1 23 0 3 1475 682 185 76 15 chr11 116673590 116673722 -5170134 + B1_Mur4 SINE Alu 1 140 -10 3 1475 300 53 0 0 chr11 116673722 116673760 -5170096 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1475 202 211 0 0 chr11 116673799 116673837 -5170019 + GA-rich Low_complexity Low_complexity 3 40 0 3 1475 452 205 43 86 chr11 116675125 116675264 -5168592 + B1_Mur1 SINE Alu 4 136 -13 3 1475 312 137 0 0 chr11 116676614 116676665 -5167191 + (A)n Simple_repeat Simple_repeat 1 51 0 3 1475 194 81 0 26 chr11 116676715 116676753 -5167103 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1475 431 146 0 81 chr11 116677108 116677358 -5166498 + G-rich Low_complexity Low_complexity 1 229 0 3 1475 925 168 207 0 chr11 116677769 116677948 -5165908 - B3 SINE B2 0 216 1 3 1475 609 265 82 41 chr11 116679034 116679254 -5164602 + B4A SINE B4 1 229 -63 3 1475 630 206 21 42 chr11 116679254 116679396 -5164460 + B1_Mur1 SINE Alu 1 139 -10 3 1475 342 0 0 0 chr11 116679396 116679434 -5164422 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1475 298 286 0 0 chr11 116679456 116679533 -5164323 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 3 1475 429 227 0 0 chr11 116679551 116679661 -5164195 + (TG)n Simple_repeat Simple_repeat 1 110 0 3 1475 919 257 71 29 chr11 116679673 116679953 -5163903 - B4A SINE B4 0 292 1 3 1475 590 251 188 5 chr11 116679953 116680177 -5163679 + MLT1B LTR MaLR 126 390 0 3 1475 672 167 0 0 chr11 116680583 116680727 -5163129 + (TG)n Simple_repeat Simple_repeat 2 145 0 3 1475 810 194 0 0 chr11 116680911 116681045 -5162811 - B1_Mus2 SINE Alu -13 134 1 3 1475 183 300 12 59 chr11 116681096 116681181 -5162675 - L4 LINE RTE -805 1224 1144 3 1475 656 212 144 0 chr11 116681626 116681786 -5162070 - B3 SINE B2 -25 191 9 3 1475 623 136 110 0 chr11 116681816 116681934 -5161922 - ID_B1 SINE B4 -3 221 91 3 1475 198 339 0 0 chr11 116682217 116682276 -5161580 - L3 LINE CR1 -107 4382 4324 3 1475 211 350 92 34 chr11 116682497 116682704 -5161152 - L2a LINE L2 -25 3401 3183 4 1475 297 0 0 0 chr11 116682704 116682737 -5161119 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1475 493 65 0 38 chr11 116683201 116683281 -5160575 + (GGA)n Simple_repeat Simple_repeat 2 78 0 4 1475 203 0 0 36 chr11 116684362 116684390 -5159466 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4 1475 1026 196 14 29 chr11 116684405 116684615 -5159241 + B3 SINE B2 5 211 -5 4 1475 24 32 0 0 chr11 116684616 116684647 -5159209 + AT_rich Low_complexity Low_complexity 1 31 0 4 1475 574 233 226 0 chr11 116684648 116684781 -5159075 - RSINE1 SINE B4 0 165 3 4 1475 796 221 72 21 chr11 116684864 116685058 -5158798 + B3 SINE B2 1 204 -12 4 1475 1172 81 0 7 chr11 116685071 116685220 -5158636 - B1_Mus1 SINE Alu 0 148 1 4 1475 631 208 87 87 chr11 116685267 116685462 -5158394 + B3A SINE B2 2 196 -2 4 1475 1242 95 10 40 chr11 116685471 116685631 -5158225 + B2_Mm1a SINE B2 1 160 -33 4 1475 231 36 0 0 chr11 116685631 116685659 -5158197 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 1475 1242 95 10 40 chr11 116685659 116685681 -5158175 + B2_Mm1a SINE B2 161 178 -15 4 1475 1142 90 7 0 chr11 116685681 116685826 -5158030 + B1_Mus1 SINE Alu 2 147 -1 4 1475 1242 95 10 40 chr11 116685826 116685840 -5158016 + B2_Mm1a SINE B2 179 192 -1 4 1475 757 160 7 65 chr11 116685850 116686004 -5157852 + B1_Mur4 SINE Alu 5 149 -1 4 1475 325 254 0 0 chr11 116686070 116686137 -5157719 + ID_B1 SINE B4 90 156 -68 4 1475 818 155 49 0 chr11 116686144 116686286 -5157570 + B1_Mur4 SINE Alu 1 149 -1 4 1475 189 0 0 0 chr11 116686305 116686326 -5157530 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4 1475 414 53 0 0 chr11 116686579 116686636 -5157220 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1475 471 198 0 98 chr11 116687407 116687519 -5156337 - PB1D9 SINE Alu 0 120 20 4 1475 512 208 28 78 chr11 116687528 116687669 -5156187 + B1F SINE Alu 14 147 -2 4 1475 743 88 79 0 chr11 116689546 116689660 -5154196 - B2_Mm2 SINE B2 -71 124 2 4 1475 435 260 15 61 chr11 116689688 116689819 -5154037 + B1_Mur1 SINE Alu 5 129 -20 4 1475 551 253 72 7 chr11 116690142 116690173 -5153683 + ID_B1 SINE B4 70 224 0 4 1475 557 203 102 0 chr11 116690173 116690291 -5153565 + B1F SINE Alu 20 149 0 4 1475 261 213 0 0 chr11 116690764 116690811 -5153045 - PB1D7 SINE Alu -69 51 5 4 1475 385 216 128 0 chr11 116690833 116690935 -5152921 - B3 SINE B2 -1 215 101 4 1475 1183 178 54 90 chr11 116691202 116691536 -5152320 + RLTRETN_Mm LTR ERVK 1 322 0 4 1475 1180 154 61 0 chr11 116691565 116691779 -5152077 + RLTR20B3 LTR ERVK 259 485 -92 4 1475 261 213 0 0 chr11 116691896 116691943 -5151913 - PB1D7 SINE Alu -69 51 5 4 1475 299 275 75 0 chr11 116691941 116692021 -5151835 + RLTR20B3 LTR ERVK 482 567 -10 4 1475 1131 45 22 0 chr11 116692021 116692155 -5151701 + B1_Mus1 SINE Alu 2 138 -10 4 1475 1175 252 59 110 chr11 116692239 116692358 -5151498 - RMER13A LTR ERVK -377 483 392 4 1475 951 89 89 0 chr11 116692358 116692493 -5151363 - B1_Mus2 SINE Alu 0 147 1 4 1475 1175 252 59 110 chr11 116692493 116692882 -5150974 - RMER13A LTR ERVK -469 391 1 4 1475 259 172 119 17 chr11 116692908 116692967 -5150889 - B3A SINE B2 -133 65 1 4 1475 233 286 0 0 chr11 116693005 116693061 -5150795 + PB1D10 SINE Alu 26 81 -36 4 1475 894 169 7 7 chr11 116693177 116693326 -5150530 + B1_Mur2 SINE Alu 1 149 0 4 1475 1202 68 0 0 chr11 116693433 116693580 -5150276 + B1_Mus2 SINE Alu 1 147 0 4 1475 294 115 0 0 chr11 116693580 116693632 -5150224 + (A)n Simple_repeat Simple_repeat 1 52 0 4 1475 528 190 10 0 chr11 116695035 116695135 -5148721 - ID_B1 SINE B4 -3 221 121 4 1475 254 348 32 21 chr11 116695134 116695228 -5148628 - PB1D10 SINE Alu -22 95 1 4 1475 484 231 46 0 chr11 116695269 116695399 -5148457 - B1_Mus2 SINE Alu -6 141 6 4 1475 605 197 28 77 chr11 116695426 116695569 -5148287 + B1_Mus1 SINE Alu 2 137 -11 4 1475 818 198 25 0 chr11 116695579 116695736 -5148120 - B3 SINE B2 -6 210 50 4 1475 3473 106 225 11 chr11 116696055 116696678 -5147178 - RMER6A LTR ERVK 0 756 1 4 1475 915 104 29 29 chr11 116697479 116697617 -5146239 + B1_Mm SINE Alu 3 140 -7 4 1475 361 253 77 0 chr11 116697634 116697725 -5146131 + PB1D10 SINE Alu 10 107 -10 4 1475 1105 51 43 0 chr11 116698347 116698485 -5145371 + B1_Mm SINE Alu 2 145 -2 4 1475 379 349 39 26 chr11 116699090 116699246 -5144610 + RSINE1 SINE B4 8 165 0 4 1475 769 171 57 0 chr11 116699411 116699551 -5144305 + B1_Mur2 SINE Alu 1 148 -1 4 1475 585 221 8 0 chr11 116699565 116699692 -5144164 + B1_Mur2 SINE Alu 22 149 0 4 1475 565 132 274 26 chr11 116699717 116699834 -5144022 + B1_Mus2 SINE Alu 2 147 0 4 1475 926 173 42 10 chr11 116701089 116701282 -5142574 + LFSINE_Vert SINE SINE 220 418 -41 4 1475 242 279 0 0 chr11 116701397 116701476 -5142380 + A-rich Low_complexity Low_complexity 1 79 0 4 1475 398 266 44 9 chr11 116702869 116702983 -5140873 + PB1D9 SINE Alu 3 120 0 4 1475 324 277 145 8 chr11 116702986 116703117 -5140739 + B1_Mur3 SINE Alu 1 149 0 4 1475 440 236 138 46 chr11 116703160 116703355 -5140501 + B3 SINE B2 1 213 -3 4 1475 511 134 39 49 chr11 116703508 116703610 -5140246 - B1_Mus2 SINE Alu -3 144 44 4 1475 311 362 92 0 chr11 116705442 116705594 -5138262 - ID_B1 SINE B4 -58 166 1 4 1475 560 220 68 8 chr11 116705910 116706043 -5137813 - B1_Mur4 SINE Alu -5 145 5 4 1475 1240 14 7 40 chr11 116706316 116706468 -5137388 - B1_Mm SINE Alu 0 147 1 4 1475 375 206 227 0 chr11 116706961 116707058 -5136798 - PB1D9 SINE Alu -1 119 1 4 1475 403 197 10 30 chr11 116707119 116707219 -5136637 + B1_Mur4 SINE Alu 22 110 -7 4 1475 408 243 59 21 chr11 116707412 116707542 -5136314 - PB1D9 SINE Alu -13 137 9 4 1475 684 256 30 24 chr11 116707549 116707717 -5136139 - B3 SINE B2 -10 206 38 4 1475 234 336 9 52 chr11 116707738 116707854 -5136002 - PB1D10 SINE Alu -2 115 5 4 1475 332 315 31 23 chr11 116708193 116708323 -5135533 - ID_B1 SINE B4 -1 223 93 4 1475 1115 48 7 58 chr11 116708353 116708508 -5135348 - B1_Mus2 SINE Alu 0 147 1 4 1475 805 287 38 5 chr11 116708609 116708819 -5135037 + ID_B1 SINE B4 3 219 -5 4 1475 228 108 0 0 chr11 116708820 116708857 -5134999 + B1_Mus2 SINE Alu 109 145 -2 4 1475 362 252 139 0 chr11 116708860 116708975 -5134881 + RSINE1 SINE B4 4 134 -31 4 1475 220 295 117 64 chr11 116709378 116709407 -5134449 + ID_B1 SINE B4 77 175 -49 4 1475 277 215 169 0 chr11 116709407 116709472 -5134384 + PB1D10 SINE Alu 19 94 -23 4 1475 455 75 0 15 chr11 116709945 116710013 -5133843 - B1_Mus2 SINE Alu -79 68 2 4 1475 247 253 151 21 chr11 116710074 116710167 -5133689 + B1_Mm SINE Alu 2 106 -11 4 1475 304 246 16 0 chr11 116712510 116712571 -5131285 + L1MEg LINE L1 1882 1943 -4141 4 1475 26 30 0 0 chr11 116713686 116713719 -5130137 + GC_rich Low_complexity Low_complexity 1 33 0 4 1475 24 85 0 0 chr11 116714515 116714574 -5129282 + GC_rich Low_complexity Low_complexity 1 59 0 4 1475 387 317 41 0 chr11 116716143 116716266 -5127590 + RSINE1 SINE B4 3 130 -35 4 1475 1170 35 14 14 chr11 116716684 116716831 -5127025 + B1_Mm SINE Alu 1 147 0 4 1475 183 42 0 0 chr11 116716833 116716857 -5126999 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1475 1219 81 0 0 chr11 116716871 116717019 -5126837 + B1_Mus1 SINE Alu 1 148 0 4 1475 260 369 58 0 chr11 116717162 116717265 -5126591 - ID_B1 SINE B4 -37 187 79 4 1475 694 161 7 110 chr11 116717513 116717667 -5126189 - B1_Mur4 SINE Alu -1 149 12 4 1475 227 365 57 9 chr11 116717797 116717902 -5125954 - PB1D10 SINE Alu -5 112 3 4 1475 644 174 16 0 chr11 116718238 116718359 -5125497 + B1_Mur4 SINE Alu 26 148 -2 4 1475 471 262 9 9 chr11 116718403 116718511 -5125345 + PB1D10 SINE Alu 2 109 -8 4 1475 284 328 82 62 chr11 116718692 116718900 -5124956 + MIRb SINE MIR 17 228 -40 4 1475 345 271 16 56 chr11 116718974 116719099 -5124757 + PB1D9 SINE Alu 1 120 0 4 1475 335 241 115 0 chr11 116719119 116719206 -5124650 + PB1D10 SINE Alu 17 113 -4 4 1475 1294 14 7 0 chr11 116719378 116719524 -5124332 - B1_Mus2 SINE Alu 0 147 1 4 1475 490 286 82 0 chr11 116719556 116719703 -5124153 - RSINE1 SINE B4 0 165 7 4 1475 219 69 0 0 chr11 116720429 116720458 -5123398 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1475 195 317 77 29 chr11 116721048 116721152 -5122704 - MIRb SINE MIR -49 219 111 4 1475 447 235 0 0 chr11 116721361 116721444 -5122412 + B1F2 SINE Alu 1 83 -66 4 1475 644 223 19 39 chr11 116721444 116721598 -5122258 + RSINE1 SINE B4 2 152 -13 4 1475 285 243 133 19 chr11 116721714 116721819 -5122037 - PB1 SINE Alu 0 120 4 4 1475 523 237 8 8 chr11 116722194 116722313 -5121543 + PB1D9 SINE Alu 1 119 -1 4 1475 719 175 103 0 chr11 116723598 116723724 -5120132 + ID_B1 SINE B4 83 221 -3 4 1475 288 264 155 31 chr11 116723617 116723746 -5120110 - YREP_Mm Unknown Unknown -1516 296 152 4 1475 623 227 0 16 chr11 116723890 116724011 -5119845 - PB1D9 SINE Alu -1 119 1 4 1475 308 24 24 0 chr11 116724554 116724595 -5119261 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 1475 1087 64 7 41 chr11 116724597 116724744 -5119112 - B1_Mus1 SINE Alu -6 142 1 4 1475 26 0 0 0 chr11 116724746 116724772 -5119084 + AT_rich Low_complexity Low_complexity 1 26 0 5 1475 1062 190 15 20 chr11 116724774 116724978 -5118878 - B3 SINE B2 -5 211 9 5 1475 416 281 0 0 chr11 116725015 116725111 -5118745 - PB1D9 SINE Alu -9 111 16 5 1475 263 263 141 40 chr11 116725819 116725918 -5117938 - MIRb SINE MIR -118 150 42 5 1475 311 202 216 29 chr11 116726505 116726607 -5117249 + ID_B1 SINE B4 103 223 -1 5 1475 243 312 46 72 chr11 116726609 116726639 -5117217 - YREP_Mm Unknown Unknown -1477 335 188 5 1475 506 246 57 0 chr11 116726639 116726761 -5117095 + B1F SINE Alu 10 138 -11 5 1475 1037 53 8 0 chr11 116728181 116728313 -5115543 - B1_Mus1 SINE Alu 0 148 16 5 1475 457 262 57 76 chr11 116728184 116728341 -5115515 - B4 SINE B4 -69 223 70 5 1475 431 242 55 77 chr11 116728341 116728378 -5115478 + MT2B LTR ERVL 119 153 -431 5 1475 743 107 26 18 chr11 116728378 116728492 -5115364 + B1_Mus2 SINE Alu 1 115 -32 5 1475 455 268 44 18 chr11 116728539 116728653 -5115203 - ID_B1 SINE B4 -2 222 106 5 1475 1477 88 0 5 chr11 116728892 116729086 -5114770 + B2_Mm2 SINE B2 3 195 0 5 1475 798 216 64 23 chr11 116729093 116729264 -5114592 + B3 SINE B2 39 216 0 5 1475 611 152 28 19 chr11 116729269 116729376 -5114480 + B1_Mus1 SINE Alu 40 147 -1 5 1475 300 196 52 37 chr11 116729438 116729515 -5114341 + PB1D7 SINE Alu 52 142 -7 5 1475 273 205 7 32 chr11 116730005 116730092 -5113764 + PB1 SINE Alu 35 144 -5 5 1475 636 278 7 14 chr11 116730098 116730244 -5113612 + ID_B1 SINE B4 80 224 0 5 1475 321 311 96 18 chr11 116730439 116730606 -5113250 - B4A SINE B4 -1 291 112 5 1475 1392 80 27 0 chr11 116731231 116731390 -5112466 + B2_Mm1a SINE B2 2 160 -33 5 1475 243 0 0 0 chr11 116731390 116731417 -5112439 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1475 1392 80 27 0 chr11 116731417 116731444 -5112412 + B2_Mm1a SINE B2 161 192 -1 5 1475 494 275 0 48 chr11 116731585 116731753 -5112103 - L1MA4 LINE L1 -71 6229 6070 5 1475 401 262 29 19 chr11 116731768 116731873 -5111983 - B1F1 SINE Alu 0 149 44 5 1475 336 343 47 47 chr11 116731873 116731979 -5111877 - ID_B1 SINE B4 0 224 14 5 1475 285 183 133 0 chr11 116732009 116732069 -5111787 - PB1D10 SINE Alu -11 106 39 5 1475 812 143 14 41 chr11 116733302 116733448 -5110408 + B1_Mus2 SINE Alu 6 147 0 5 1475 223 286 0 0 chr11 116733455 116733504 -5110352 + ID4_ SINE ID 34 82 -1 5 1475 305 301 37 46 chr11 116733549 116733631 -5110225 + PB1D10 SINE Alu 11 90 -27 5 1475 260 246 43 0 chr11 116733631 116733700 -5110156 + ID4_ SINE ID 1 72 -11 5 1475 305 301 37 46 chr11 116733700 116733725 -5110131 + PB1D10 SINE Alu 91 117 0 5 1475 826 112 24 6 chr11 116733813 116733983 -5109873 + (TATG)n Simple_repeat Simple_repeat 4 176 0 5 1475 315 289 20 63 chr11 116733983 116734205 -5109651 + RLTR21 LTR ERVK 1085 1299 -273 5 1475 653 222 29 7 chr11 116734205 116734341 -5109515 - B1_Mur2 SINE Alu -10 139 1 5 1475 470 259 130 76 chr11 116734341 116734524 -5109332 - B3A SINE B2 -2 196 3 5 1475 315 289 20 63 chr11 116734524 116734555 -5109301 + RLTR21 LTR ERVK 1300 1327 -245 5 1475 400 183 73 0 chr11 116735665 116735747 -5108109 - PB1D10 SINE Alu -4 113 26 5 1475 352 263 202 0 chr11 116735783 116735897 -5107959 - B1F2 SINE Alu -12 137 1 5 1475 296 309 42 56 chr11 116736363 116736507 -5107349 - B3 SINE B2 -4 212 71 5 1475 384 69 379 0 chr11 116736558 116736645 -5107211 - B1_Mus2 SINE Alu -5 142 23 5 1475 578 156 40 24 chr11 116736644 116736769 -5107087 + RLTR13D6 LTR ERVK 667 793 -109 5 1475 1656 36 0 0 chr11 116736771 116736963 -5106893 + B2_Mm1a SINE B2 2 193 0 5 1475 945 195 217 32 chr11 116737020 116737187 -5106669 - ORR1D1 LTR MaLR -41 333 129 5 1475 749 235 15 46 chr11 116737187 116737383 -5106473 - B2_Mm2 SINE B2 -4 191 2 5 1475 945 195 217 32 chr11 116737383 116737496 -5106360 - ORR1D1 LTR MaLR -246 128 2 5 1475 414 0 0 0 chr11 116737767 116737813 -5106043 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1475 470 185 74 0 chr11 116737859 116737940 -5105916 - B1_Mur3 SINE Alu -60 89 3 5 1475 575 231 130 45 chr11 116738019 116738196 -5105660 - B3A SINE B2 -6 192 1 5 1475 629 264 12 42 chr11 116738205 116738371 -5105485 - ID_B1 SINE B4 -7 217 57 5 1475 605 281 14 0 chr11 116738447 116738586 -5105270 - ID_B1 SINE B4 -2 222 82 5 1475 501 17 0 0 chr11 116738704 116738762 -5105094 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1475 225 0 0 0 chr11 116738762 116738786 -5105070 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1475 437 138 12 0 chr11 116738789 116738869 -5104987 + (TGG)n Simple_repeat Simple_repeat 2 82 0 5 1475 1123 199 39 10 chr11 116738869 116739068 -5104788 + B3 SINE B2 1 206 -10 5 1475 450 0 0 0 chr11 116739068 116739118 -5104738 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1475 719 229 0 8 chr11 116739129 116739261 -5104595 + RSINE1 SINE B4 2 132 -33 5 1475 227 290 26 115 chr11 116739639 116739752 -5104104 - MER68 LTR ERVL 0 563 461 5 1475 314 305 38 38 chr11 116739918 116740075 -5103781 - MER68 LTR ERVL -293 270 114 5 1475 497 301 124 74 chr11 116740085 116740383 -5103473 + RMER5 LTR ERV1 41 353 -181 5 1475 825 128 9 21 chr11 116740393 116740533 -5103323 + B1_Mus2 SINE Alu 10 147 0 5 1475 346 305 25 44 chr11 116740588 116740746 -5103110 + CT-rich Low_complexity Low_complexity 1 155 0 5 1475 888 61 0 0 chr11 116740774 116740889 -5102967 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 5 1475 1217 89 0 29 chr11 116740898 116741072 -5102784 + B2_Mm2 SINE B2 1 169 -26 5 1475 1165 68 7 0 chr11 116741089 116741236 -5102620 - B1_Mus1 SINE Alu 0 148 1 5 1475 794 83 207 0 chr11 116741263 116741384 -5102472 + B1_Mm SINE Alu 1 146 -1 5 1475 1346 63 0 28 chr11 116741470 116741630 -5102226 + B2_Mm1t SINE B2 1 160 -33 5 1475 279 0 0 0 chr11 116741630 116741661 -5102195 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1475 1346 63 0 28 chr11 116741661 116741679 -5102177 + B2_Mm1t SINE B2 161 174 -19 5 1475 485 248 128 20 chr11 116741718 116741866 -5101990 - RSINE1 SINE B4 0 165 2 5 1475 324 0 0 0 chr11 116741874 116741910 -5101946 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 1475 895 118 81 0 chr11 116741921 116742057 -5101799 - B1_Mus2 SINE Alu 0 147 1 5 1475 587 246 77 57 chr11 116742060 116742254 -5101602 - B3A SINE B2 0 198 1 5 1475 1568 53 0 0 chr11 116742568 116742757 -5101099 - B2_Mm1a SINE B2 -3 190 2 5 1475 876 80 6 44 chr11 116743015 116743197 -5100659 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 1475 1586 57 0 0 chr11 116743230 116743422 -5100434 - B2_Mm1t SINE B2 -1 192 1 5 1475 579 248 142 90 chr11 116743424 116743770 -5100086 - MTEa LTR MaLR -13 366 3 5 1475 225 0 0 0 chr11 116744125 116744150 -5099706 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1475 321 230 39 51 chr11 116744190 116744268 -5099588 - B4 SINE B4 0 292 216 5 1475 24 67 0 0 chr11 116744338 116744383 -5099473 + AT_rich Low_complexity Low_complexity 1 45 0 5 1475 1651 36 0 0 chr11 116744386 116744578 -5099278 + B2_Mm1a SINE B2 2 193 0 5 1475 976 130 7 14 chr11 116744611 116744759 -5099097 - B1_Mur4 SINE Alu -1 149 3 5 1475 21 0 0 0 chr11 116744763 116744784 -5099072 + AT_rich Low_complexity Low_complexity 1 21 0 5 1475 948 184 99 5 chr11 116744786 116744977 -5098879 - B3 SINE B2 -6 210 2 5 1475 675 0 0 0 chr11 116744983 116745058 -5098798 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 1475 395 260 17 20 chr11 116745059 116745164 -5098692 - B1_Mur1 SINE Alu -13 136 4 5 1475 756 217 6 78 chr11 116745168 116745217 -5098639 - ID_B1 SINE B4 -2 222 174 5 1475 1541 52 5 0 chr11 116745217 116745408 -5098448 - B2_Mm1t SINE B2 -1 192 1 5 1475 756 217 6 78 chr11 116745408 116745538 -5098318 - ID_B1 SINE B4 -51 173 56 5 1475 357 303 76 110 chr11 116745618 116745855 -5098001 + MLT1D LTR MaLR 169 397 -108 5 1475 933 118 111 6 chr11 116745833 116745995 -5097861 - B2_Mm2 SINE B2 -15 180 2 5 1475 800 215 126 0 chr11 116746008 116746199 -5097657 - B3 SINE B2 0 216 2 5 1475 694 246 43 97 chr11 116746394 116746601 -5097255 + ID_B1 SINE B4 25 220 -4 5 1475 182 192 19 0 chr11 116747183 116747235 -5096621 + GA-rich Low_complexity Low_complexity 2 54 0 5 1475 292 242 61 0 chr11 116747589 116747655 -5096201 - tRNA-Ala-GCY_ tRNA tRNA -3 72 3 5 1475 615 241 30 0 chr11 116747694 116747827 -5096029 + B1_Mur1 SINE Alu 5 141 -8 5 1475 255 140 0 0 chr11 116747963 116748013 -5095843 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1475 1135 83 7 0 chr11 116749260 116749404 -5094452 - B1_Mus2 SINE Alu -1 146 2 5 1475 335 83 0 20 chr11 116749579 116749628 -5094228 - HAL1-3A_ME LINE L1 -835 2023 1976 5 1475 435 217 0 0 chr11 116749666 116749818 -5094038 + (TG)n Simple_repeat Simple_repeat 2 153 0 5 1475 271 281 0 0 chr11 116749856 116749913 -5093943 - ID SINE ID -142 82 26 5 1475 236 236 91 0 chr11 116749985 116750040 -5093816 - RSINE1 SINE B4 -94 71 12 5 1475 288 256 109 22 chr11 116750203 116750295 -5093561 - PB1 SINE Alu -8 109 10 5 1475 773 194 88 6 chr11 116750805 116750976 -5092880 - B3 SINE B2 0 216 32 5 1475 270 301 111 24 chr11 116751997 116752123 -5091733 - B1_Mm SINE Alu -6 141 5 5 1475 627 223 84 22 chr11 116752016 116752195 -5091661 - ID_B1 SINE B4 -26 198 9 5 1475 697 164 0 14 chr11 116752206 116752348 -5091508 + CT-rich Low_complexity Low_complexity 1 140 0 5 1475 422 252 20 20 chr11 116752351 116752452 -5091404 - B3 SINE B2 -114 102 2 5 1475 548 214 0 0 chr11 116752665 116752763 -5091093 + B1_Mur3 SINE Alu 1 98 -51 6 1475 584 90 155 29 chr11 116753380 116753483 -5090373 - PB1D9 SINE Alu 0 120 5 6 1475 1377 67 45 0 chr11 116753494 116753673 -5090183 - B2_Mm2 SINE B2 -7 188 2 6 1475 252 233 33 0 chr11 116753692 116753752 -5090104 + ID SINE ID 1 62 -162 6 1475 312 265 0 56 chr11 116753856 116753928 -5089928 + B1F2 SINE Alu 4 71 -78 6 1475 235 293 0 68 chr11 116753928 116753947 -5089909 + B4A SINE B4 105 172 -120 6 1475 698 255 6 32 chr11 116753967 116754125 -5089731 + RSINE1 SINE B4 6 159 -6 6 1475 386 165 0 12 chr11 116754153 116754233 -5089623 + (TA)n Simple_repeat Simple_repeat 1 79 0 6 1475 402 149 0 0 chr11 116754232 116754319 -5089537 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 1475 295 237 146 19 chr11 116754521 116754634 -5089222 - B1F SINE Alu -21 126 1 6 1475 343 286 51 0 chr11 116754637 116754735 -5089121 - MLT1F2 LTR MaLR -384 176 74 6 1475 375 272 0 0 chr11 116755381 116755462 -5088394 + PB1D7 SINE Alu 40 120 0 6 1475 1023 163 169 0 chr11 116755536 116755720 -5088136 + B3 SINE B2 2 216 0 6 1475 304 237 110 70 chr11 116755806 116755906 -5087950 + PB1D7 SINE Alu 15 118 -2 6 1475 1000 120 0 57 chr11 116755937 116756096 -5087760 + B1_Mur4 SINE Alu 1 150 0 6 1475 1245 67 72 0 chr11 116756516 116756696 -5087160 - B2_Mm1a SINE B2 0 193 1 6 1475 681 141 15 30 chr11 116756942 116757208 -5086648 + (TG)n Simple_repeat Simple_repeat 1 261 0 6 1475 995 197 52 9 chr11 116757280 116757490 -5086366 + B4A SINE B4 1 219 -73 6 1475 428 262 15 13 chr11 116757549 116757655 -5086201 + RSINE1 SINE B4 2 106 -186 6 1475 252 0 0 0 chr11 116757655 116757683 -5086173 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1475 245 288 45 106 chr11 116757683 116757716 -5086140 + B4A SINE B4 107 133 -159 6 1475 1287 87 33 0 chr11 116757705 116757889 -5085967 + B2_Mm2 SINE B2 6 195 0 6 1475 360 308 189 4 chr11 116757906 116758144 -5085712 + MLT1A LTR MaLR 82 363 -11 6 1475 684 226 38 0 chr11 116759074 116759207 -5084649 + ID_B1 SINE B4 1 138 -86 6 1475 500 270 71 0 chr11 116759197 116759323 -5084533 - B1_Mm SINE Alu -12 135 1 6 1475 959 163 0 20 chr11 116759485 116759635 -5084221 + B1_Mur2 SINE Alu 2 148 -1 6 1475 312 200 0 0 chr11 116759678 116759753 -5084103 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 1475 484 213 37 9 chr11 116759753 116759862 -5083994 - B3A SINE B2 -16 182 71 6 1475 579 295 0 15 chr11 116760057 116760210 -5083646 - ID_B1 SINE B4 -16 208 66 6 1475 2423 190 66 54 chr11 116760269 116760846 -5083010 + RLTR31A_Mm LTR ERVK 1 584 0 6 1475 444 93 0 0 chr11 116760884 116760959 -5082897 + (TATG)n Simple_repeat Simple_repeat 2 76 0 6 1475 369 0 0 0 chr11 116760996 116761037 -5082819 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 6 1475 698 199 37 0 chr11 116761037 116761165 -5082691 - B1F SINE Alu -12 137 5 6 1475 1141 76 0 0 chr11 116761346 116761490 -5082366 - B1_Mus1 SINE Alu 0 148 5 6 1475 231 370 57 25 chr11 116761989 116762111 -5081745 + MLT1B LTR MaLR 1 126 -248 6 1475 420 231 65 0 chr11 116762275 116762383 -5081473 + PB1D7 SINE Alu 1 115 -5 6 1475 401 326 21 14 chr11 116762432 116762572 -5081284 + MLT1B LTR MaLR 237 377 -13 6 1475 2268 124 45 72 chr11 116763496 116763911 -5079945 + RLTR11B LTR ERVK 1 404 -49 6 1475 2769 124 15 5 chr11 116763911 116764323 -5079533 + RLTR10C LTR ERVK 1 416 -20 6 1475 304 130 18 18 chr11 116764332 116764387 -5079469 + RLTR11B LTR ERVK 399 453 0 6 1475 268 303 73 0 chr11 116764387 116764495 -5079361 + RMER15 LTR ERVL 455 570 -5 6 1475 186 43 0 0 chr11 116766615 116766638 -5077218 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1475 1330 167 68 65 chr11 116766994 116767315 -5076541 - RLTRETN_Mm LTR ERVK 0 322 1 6 1475 537 247 10 112 chr11 116767453 116767649 -5076207 + ID_B1 SINE B4 49 224 0 6 1475 415 59 79 0 chr11 116767798 116767899 -5075957 + (CCCCAG)n Simple_repeat Simple_repeat 6 114 0 6 1475 300 274 39 58 chr11 116767899 116768037 -5075819 - MLT1D LTR MaLR -290 337 211 6 1475 186 71 0 0 chr11 116768081 116768109 -5075747 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1475 1075 22 97 0 chr11 116768110 116768244 -5075612 - B1_Mus2 SINE Alu 0 147 1 6 1475 339 184 71 113 chr11 116768261 116768402 -5075454 + RLTR15 LTR ERVK 34 168 -191 6 1475 345 253 115 63 chr11 116768391 116768644 -5075212 + RLTR15 LTR ERVK 76 341 -18 6 1475 1154 88 0 0 chr11 116768715 116768862 -5074994 + B1_Mus2 SINE Alu 1 147 0 6 1475 601 144 29 0 chr11 116769034 116769138 -5074718 + B2_Mm2 SINE B2 1 107 -88 6 1475 233 235 28 42 chr11 116769155 116769226 -5074630 + G-rich Low_complexity Low_complexity 4 73 0 6 1475 563 297 42 57 chr11 116769378 116769731 -5074125 + MYSERV6-int LTR ERVK 1 348 -6202 6 1475 1484 239 59 9 chr11 116769726 116770149 -5073707 + MYSERV6-int LTR ERVK 1193 1636 -7323 6 1475 405 226 48 55 chr11 116770397 116770542 -5073314 + MYSERV16_I-int LTR ERVK 567 710 -1616 6 1475 543 104 237 25 chr11 116770555 116770673 -5073183 - B2_Mm2 SINE B2 -6 189 47 6 1475 1246 108 11 28 chr11 116770704 116770885 -5072971 - B2_Mm1t SINE B2 -14 179 2 6 1475 927 109 0 0 chr11 116770899 116771037 -5072819 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 6 1475 1682 31 0 0 chr11 116771076 116771268 -5072588 + B2_Mm1a SINE B2 2 193 0 6 1475 1184 55 0 20 chr11 116771285 116771434 -5072422 + B1_Mm SINE Alu 2 147 0 6 1475 225 0 0 0 chr11 116771434 116771459 -5072397 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1475 258 122 24 0 chr11 116771509 116771550 -5072306 + MYSERV-int LTR ERVK 5082 5123 -1427 6 1475 466 311 38 32 chr11 116771553 116771739 -5072117 + RMER4A LTR ERVK 251 437 -29 6 1475 4452 158 111 28 chr11 116771739 116772102 -5071754 + MYSERV6-int LTR ERVK 7764 8156 -803 6 1475 342 0 0 0 chr11 116772102 116772140 -5071716 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 6 1475 4452 158 111 28 chr11 116772140 116772827 -5071029 + MYSERV6-int LTR ERVK 8157 8901 -58 6 1475 21 57 0 0 chr11 116772831 116772866 -5070990 + AT_rich Low_complexity Low_complexity 1 35 0 6 1475 1337 86 37 0 chr11 116772905 116773092 -5070764 - B2_Mm2 SINE B2 -1 194 1 6 1475 306 211 143 24 chr11 116773148 116773274 -5070582 + RLTR15 LTR ERVK 31 171 -188 6 1475 356 271 59 27 chr11 116773362 116773548 -5070308 + RLTR15 LTR ERVK 147 338 -21 6 1475 329 0 24 0 chr11 116773687 116773728 -5070128 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 6 1475 1196 61 0 7 chr11 116773728 116773876 -5069980 - B1_Mus1 SINE Alu -1 147 1 6 1475 30 0 0 0 chr11 116773876 116773906 -5069950 + AT_rich Low_complexity Low_complexity 1 30 0 6 1475 798 248 0 0 chr11 116773992 116774141 -5069715 - RSINE1 SINE B4 -12 153 5 6 1475 1068 141 106 26 chr11 116774165 116774354 -5069502 - B3 SINE B2 -12 204 1 6 1475 483 149 0 0 chr11 116774737 116774844 -5069012 + (TC)n Simple_repeat Simple_repeat 1 107 0 6 1475 495 69 0 0 chr11 116775519 116775591 -5068265 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1475 479 252 58 10 chr11 116776442 116776546 -5067310 + PB1D9 SINE Alu 7 115 -5 6 1475 430 290 9 9 chr11 116776553 116776661 -5067195 + ID_B1 SINE B4 86 193 -31 6 1475 1821 182 40 23 chr11 116776669 116777023 -5066833 + ORR1C1 LTR MaLR 5 364 -14 6 1475 289 321 108 45 chr11 116777202 116777424 -5066432 - LTR16C LTR ERVL -32 457 222 6 1475 257 265 97 48 chr11 116777606 116777709 -5066147 - MIR SINE MIR -78 184 77 6 1475 613 268 0 0 chr11 116777958 116778085 -5065771 - ID_B1 SINE B4 -5 219 93 6 1475 1478 201 75 101 chr11 116778644 116779070 -5064786 + MTD LTR MaLR 5 419 0 6 1475 312 27 0 0 chr11 116779545 116779582 -5064274 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1475 192 125 0 0 chr11 116780232 116780264 -5063592 + (CGAG)n Simple_repeat Simple_repeat 1 32 0 6 1475 393 22 0 0 chr11 116781493 116781539 -5062317 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 6 1475 358 281 0 12 chr11 116784090 116784173 -5059683 - ID4 SINE ID 0 83 2 6 1475 415 228 0 21 chr11 116784448 116784542 -5059314 - ID_B1 SINE B4 -4 220 129 6 1476 197 65 0 31 chr11 116786400 116786432 -5057424 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1476 442 81 0 0 chr11 116786432 116786494 -5057362 - B1_Mur4 SINE Alu -11 139 78 6 1476 1292 99 0 22 chr11 116786494 116786679 -5057177 - B2_Mm2 SINE B2 -13 182 2 6 1476 384 294 47 68 chr11 116787929 116788119 -5055737 - LTR85c LTR Gypsy? -1 822 637 6 1476 377 20 20 0 chr11 116788328 116788378 -5055478 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1476 201 182 22 22 chr11 116788638 116788683 -5055173 + CT-rich Low_complexity Low_complexity 3 47 0 6 1476 262 314 90 43 chr11 116788729 116788890 -5054966 - MIR3 SINE MIR -31 177 25 6 1476 353 293 0 0 chr11 116789659 116789741 -5054115 + ID4 SINE ID 2 83 0 6 1476 204 273 0 0 chr11 116789830 116789896 -5053960 + CT-rich Low_complexity Low_complexity 4 69 0 6 1476 273 321 34 48 chr11 116790352 116790499 -5053357 + RMER15 LTR ERVL 407 551 -24 6 1476 2526 146 57 121 chr11 116791484 116791571 -5052285 - RLTR24 LTR ERV1 0 529 422 6 1476 180 0 0 0 chr11 116791571 116791591 -5052265 + (TC)n Simple_repeat Simple_repeat 2 21 0 6 1476 450 0 0 0 chr11 116791591 116791640 -5052216 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1476 2526 146 57 121 chr11 116791640 116792112 -5051744 - RLTR24 LTR ERV1 -108 421 6 6 1476 557 226 242 9 chr11 116793216 116793439 -5050417 + B4A SINE B4 2 276 -16 6 1476 438 243 0 0 chr11 116793777 116793917 -5049939 + (TG)n Simple_repeat Simple_repeat 1 140 0 6 1476 228 267 50 0 chr11 116793954 116794014 -5049842 - PB1D10 SINE Alu -26 91 29 6 1476 285 321 98 29 chr11 116794460 116794481 -5049375 - B3 SINE B2 -21 195 11 7 1476 779 219 7 7 chr11 116794481 116794633 -5049223 - RSINE1 SINE B4 -2 163 12 7 1476 732 103 0 0 chr11 116794741 116794848 -5049008 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 7 1476 1072 204 24 14 chr11 116794851 116795060 -5048796 - ID_B1 SINE B4 -13 211 1 7 1476 209 209 0 23 chr11 116795673 116795717 -5048139 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1476 857 281 39 25 chr11 116795730 116796015 -5047841 - B4A SINE B4 -2 290 2 7 1476 223 180 60 0 chr11 116796019 116796069 -5047787 - PB1D10 SINE Alu 0 117 65 7 1476 530 219 76 30 chr11 116796027 116796159 -5047697 - ID_B1 SINE B4 -8 216 79 7 1476 333 0 0 0 chr11 116796161 116796198 -5047658 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1476 714 181 60 0 chr11 116796206 116796339 -5047517 - RSINE1 SINE B4 -21 144 4 7 1476 360 0 0 0 chr11 116796365 116796405 -5047451 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1476 230 326 43 0 chr11 116796423 116796515 -5047341 - L2 LINE L2 -595 2824 2729 7 1476 281 26 0 26 chr11 116796799 116796838 -5047018 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 7 1476 297 0 0 0 chr11 116797571 116797604 -5046252 + (GCCTG)n Simple_repeat Simple_repeat 3 35 0 7 1476 378 197 0 0 chr11 116798409 116798475 -5045381 - MTEa LTR MaLR 0 379 314 7 1476 603 102 0 0 chr11 116798475 116798563 -5045293 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 7 1476 933 215 88 85 chr11 116798572 116798877 -5044979 - MTEa LTR MaLR -55 324 19 7 1476 216 67 0 0 chr11 116800781 116800811 -5043045 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 7 1476 650 239 100 0 chr11 116800818 116800998 -5042858 - ID_B1 SINE B4 -20 204 7 7 1476 312 125 0 0 chr11 116801263 116801327 -5042529 + (A)n Simple_repeat Simple_repeat 1 64 0 7 1476 3090 157 114 49 chr11 116801446 116802096 -5041760 - RLTR17 LTR ERVK 0 692 1 7 1476 331 222 0 27 chr11 116802117 116802191 -5041665 + ID4_ SINE ID 1 72 -11 7 1476 301 255 70 20 chr11 116802794 116802894 -5040962 - MLT1C LTR MaLR -337 130 26 7 1476 311 256 105 0 chr11 116803269 116803355 -5040501 + ID_B1 SINE B4 51 145 -79 7 1476 213 253 0 0 chr11 116803632 116803719 -5040137 + (TG)n Simple_repeat Simple_repeat 2 88 0 7 1476 287 105 18 0 chr11 116803718 116803775 -5040081 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1476 411 21 0 0 chr11 116803775 116803823 -5040033 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1476 801 218 99 21 chr11 116804142 116804334 -5039522 + ID_B1 SINE B4 2 208 -16 7 1476 266 286 78 35 chr11 116804232 116804348 -5039508 + B1F SINE Alu 29 149 0 7 1476 535 207 34 17 chr11 116804349 116804487 -5039369 + B3A SINE B2 1 150 -43 7 1476 288 154 0 0 chr11 116804487 116804539 -5039317 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1476 876 197 0 0 chr11 116804543 116804690 -5039166 - B1_Mur2 SINE Alu -1 148 2 7 1476 306 0 0 0 chr11 116804691 116804725 -5039131 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1476 228 67 0 0 chr11 116804738 116804768 -5039088 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1476 1138 69 12 6 chr11 116804768 116804929 -5038927 - B2_Mm2 SINE B2 -33 162 1 7 1476 260 150 0 0 chr11 116804971 116805011 -5038845 + B3A SINE B2 9 48 -150 7 1476 543 299 67 14 chr11 116805008 116805218 -5038638 + B4A SINE B4 72 292 0 7 1476 702 184 0 0 chr11 116805251 116805425 -5038431 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 1476 746 163 6 13 chr11 116805449 116805772 -5038084 + (CA)n Simple_repeat Simple_repeat 1 320 0 7 1476 293 327 0 29 chr11 116808869 116809042 -5034814 + G-rich Low_complexity Low_complexity 5 172 0 7 1476 220 322 0 0 chr11 116809467 116809526 -5034330 + (TCCA)n Simple_repeat Simple_repeat 1 59 0 7 1476 273 151 0 0 chr11 116810607 116810660 -5033196 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1476 191 98 30 90 chr11 116810668 116810735 -5033121 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 7 1476 801 79 14 7 chr11 116810754 116810895 -5032961 + (TG)n Simple_repeat Simple_repeat 2 143 0 7 1476 205 235 24 0 chr11 116812334 116812419 -5031437 + (CATATA)n Simple_repeat Simple_repeat 1 87 0 7 1476 228 35 0 0 chr11 116812728 116812757 -5031099 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1476 1244 99 35 0 chr11 116813094 116813266 -5030590 + B2_Mm2 SINE B2 3 180 -15 7 1476 1149 50 14 0 chr11 116813267 116813406 -5030450 + B1_Mm SINE Alu 1 141 -6 7 1476 183 42 0 0 chr11 116813408 116813432 -5030424 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 7 1476 620 309 21 5 chr11 116813824 116814016 -5029840 + MTC LTR MaLR 1 195 -226 7 1476 333 348 32 81 chr11 116814153 116814400 -5029456 - MLT1B LTR MaLR 0 390 156 7 1476 582 200 0 62 chr11 116814408 116814520 -5029336 + PB1D7 SINE Alu 1 105 -15 7 1476 1091 263 56 58 chr11 116814520 116814896 -5028960 + MTE2a LTR MaLR 4 378 -1 7 1476 959 199 61 25 chr11 116814988 116815184 -5028672 - B3 SINE B2 -11 205 3 7 1476 230 283 9 147 chr11 116815198 116815314 -5028542 - MLT1B LTR MaLR -367 100 1 7 1476 246 281 22 33 chr11 116816234 116816326 -5027530 - ORR1E LTR MaLR -10 369 279 7 1476 271 254 45 0 chr11 116816442 116816509 -5027347 + B4A SINE B4 127 196 -96 7 1476 367 263 0 50 chr11 116816493 116816593 -5027263 + MT2B LTR ERVL 153 247 -354 7 1476 491 167 77 19 chr11 116816510 116816590 -5027266 + PB1D9 SINE Alu 6 108 -12 7 1476 355 310 11 0 chr11 116816590 116816605 -5027251 + B4A SINE B4 201 215 -77 7 1476 291 28 0 0 chr11 116816605 116816641 -5027215 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 7 1476 355 310 11 0 chr11 116816649 116816712 -5027144 + B4A SINE B4 216 286 -6 7 1476 480 280 24 0 chr11 116816785 116816910 -5026946 - ORR1E LTR MaLR -231 128 1 7 1476 1089 229 48 146 chr11 116817093 116817491 -5026365 + MTE2a LTR MaLR 19 377 -2 7 1476 307 269 96 96 chr11 116817501 116817657 -5026199 + MLT1A LTR MaLR 26 181 -193 7 1476 603 219 106 32 chr11 116817671 116817860 -5025996 + B4A SINE B4 72 274 -18 7 1476 180 111 0 0 chr11 116817863 116817890 -5025966 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1476 227 295 156 0 chr11 116817902 116818024 -5025832 + ID_B1 SINE B4 81 221 -3 7 1476 2043 162 15 0 chr11 116818046 116818385 -5025471 - MTC LTR MaLR -8 413 70 7 1476 834 49 32 0 chr11 116818385 116818508 -5025348 + (TTCTC)n Simple_repeat Simple_repeat 4 130 0 7 1476 706 157 31 8 chr11 116818522 116818650 -5025206 - B1_Mur4 SINE Alu 0 150 20 7 1476 304 154 0 0 chr11 116818640 116818692 -5025164 - MTC LTR MaLR -339 82 31 7 1476 925 107 34 0 chr11 116818687 116818836 -5025020 + B2_Mm2 SINE B2 36 189 -6 7 1476 182 384 93 19 chr11 116818861 116819076 -5024780 - L2 LINE L2 -1357 2062 1832 7 1476 568 322 38 88 chr11 116819089 116819429 -5024427 - MLT1B LTR MaLR -27 363 41 7 1476 375 23 0 0 chr11 116821844 116821888 -5021968 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1476 520 148 41 12 chr11 116821886 116822057 -5021799 + (CAGA)n Simple_repeat Simple_repeat 2 177 0 7 1476 335 235 0 0 chr11 116822474 116822559 -5021297 - L1MB2 LINE L1 -3 6168 6084 7 1476 390 42 0 0 chr11 116822642 116822690 -5021166 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1476 914 221 23 6 chr11 116822843 116823020 -5020836 - B3A SINE B2 -18 180 1 7 1476 311 347 45 45 chr11 116823020 116823139 -5020717 - B4A SINE B4 -61 231 110 7 1476 606 262 141 5 chr11 116823139 116823323 -5020533 - B3 SINE B2 -3 213 5 7 1476 311 347 45 45 chr11 116823323 116823338 -5020518 - B4A SINE B4 -183 109 98 7 1476 423 0 0 0 chr11 116823338 116823385 -5020471 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1476 1118 87 0 0 chr11 116823385 116823523 -5020333 - B1_Mus1 SINE Alu -10 138 1 7 1476 311 347 45 45 chr11 116823523 116823609 -5020247 - B4A SINE B4 -195 97 11 7 1476 608 250 150 26 chr11 116823617 116823810 -5020046 - B4 SINE B4 -66 226 10 7 1476 603 62 0 0 chr11 116823951 116824031 -5019825 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1476 570 202 52 108 chr11 116825146 116825340 -5018516 + B4A SINE B4 42 224 -68 7 1476 842 90 60 0 chr11 116825209 116825342 -5018514 + B1_Mur3 SINE Alu 9 149 0 7 1476 302 237 0 0 chr11 116825380 116825439 -5018417 - MTEb LTR MaLR -314 65 7 7 1476 673 200 56 28 chr11 116825445 116825589 -5018267 + B1_Mur1 SINE Alu 2 149 0 7 1476 259 308 126 0 chr11 116827770 116827913 -5015943 - MER91A DNA Tip100 -35 161 1 7 1476 24 0 0 0 chr11 116829117 116829141 -5014715 + GC_rich Low_complexity Low_complexity 1 24 0 7 1476 281 206 214 29 chr11 116830645 116830715 -5013141 - BC1_Mm scRNA scRNA -67 85 1 7 1476 330 205 121 0 chr11 116830730 116830813 -5013043 - PB1D10 SINE Alu -9 108 16 7 1476 514 228 94 8 chr11 116830912 116831040 -5012816 - RSINE1 SINE B4 -25 140 2 7 1476 331 278 22 22 chr11 116831069 116831161 -5012695 - Tigger15a DNA TcMar -447 268 177 7 1476 223 250 0 0 chr11 116831338 116831390 -5012466 - MIR SINE MIR -74 134 83 7 1476 765 113 0 0 chr11 116831761 116831876 -5011980 + B1_Mur4 SINE Alu 34 148 -2 7 1476 672 256 45 0 chr11 116831890 116832046 -5011810 + RSINE1 SINE B4 3 165 0 7 1476 181 220 20 0 chr11 116832077 116832127 -5011729 + L2b LINE L2 3089 3139 -236 7 1476 253 136 0 0 chr11 116832201 116832245 -5011611 - ID_B1 SINE B4 0 224 181 7 1476 247 200 100 0 chr11 116832245 116832271 -5011585 - PB1D10 SINE Alu 0 117 41 7 1476 498 108 0 0 chr11 116832490 116832564 -5011292 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 7 1476 632 278 85 11 chr11 116833031 116833220 -5010636 + ID_B1 SINE B4 1 203 -21 7 1476 24 0 0 0 chr11 116833810 116833834 -5010022 + AT_rich Low_complexity Low_complexity 1 24 0 7 1476 670 221 58 26 chr11 116835782 116835973 -5007883 + ID_B1 SINE B4 2 198 -26 7 1476 204 258 123 0 chr11 116836471 116836556 -5007300 - MIR SINE MIR -120 148 55 7 1476 556 130 9 9 chr11 116837078 116837194 -5006662 + (TG)n Simple_repeat Simple_repeat 1 116 0 8 1476 416 86 358 0 chr11 116837208 116837289 -5006567 + B1_Mus1 SINE Alu 1 110 -38 8 1476 303 171 56 14 chr11 116837270 116837341 -5006515 - B4A SINE B4 -133 159 86 8 1476 329 339 75 73 chr11 116837372 116837907 -5005949 - L1MEg LINE L1 -1020 5126 4600 8 1476 313 275 49 54 chr11 116837914 116837951 -5005905 - L1MEg LINE L1 -5435 807 771 8 1476 1197 41 7 0 chr11 116837951 116838096 -5005760 - B1_Mm SINE Alu 0 147 2 8 1476 313 275 49 54 chr11 116838096 116838262 -5005594 - L1MEg LINE L1 -5472 770 605 8 1476 304 260 7 7 chr11 116838450 116838597 -5005259 + (TGGA)n Simple_repeat Simple_repeat 2 148 0 8 1476 221 326 20 30 chr11 116838767 116838868 -5004988 - MIR3 SINE MIR -36 172 73 8 1476 346 180 0 0 chr11 116839301 116839362 -5004494 - RSINE1 SINE B4 -102 63 3 8 1476 1190 64 0 0 chr11 116840557 116840698 -5003158 - B1_Mus2 SINE Alu -5 142 2 8 1476 265 317 28 84 chr11 116840702 116840768 -5003088 - B2_Mm2 SINE B2 -2 193 127 8 1476 189 0 0 0 chr11 116840768 116840789 -5003067 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1476 558 179 11 16 chr11 116840789 116840901 -5002955 - B3A SINE B2 -60 138 25 8 1476 460 212 419 26 chr11 116840910 116841065 -5002791 - B3 SINE B2 0 216 1 8 1476 306 125 0 0 chr11 116841341 116841389 -5002467 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 1476 320 239 132 33 chr11 116841503 116841594 -5002262 + PB1D10 SINE Alu 27 126 -1 8 1476 590 244 82 18 chr11 116842549 116842720 -5001136 - RMER5 LTR ERV1 0 534 353 8 1476 376 315 95 32 chr11 116842768 116842958 -5000898 - RMER5 LTR ERV1 -276 258 57 8 1476 254 307 0 129 chr11 116843529 116843583 -5000273 - B4A SINE B4 0 292 245 8 1476 1004 99 0 78 chr11 116843583 116843736 -5000120 - B1_Mm SINE Alu -5 142 2 8 1476 254 307 0 129 chr11 116843736 116843782 -5000074 - B4A SINE B4 -48 244 205 8 1476 534 273 12 36 chr11 116843783 116843799 -5000057 - B4A SINE B4 -47 245 230 8 1476 977 232 24 5 chr11 116843799 116844011 -4999845 - B3 SINE B2 0 216 1 8 1476 534 273 12 36 chr11 116844011 116844161 -4999695 - B4A SINE B4 -63 229 84 8 1476 225 409 36 7 chr11 116844425 116844563 -4999293 - L2b LINE L2 -20 3355 3214 8 1476 746 233 134 5 chr11 116849222 116849416 -4994440 - ID_B1 SINE B4 -4 220 2 8 1476 378 0 0 0 chr11 116849438 116849480 -4994376 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1476 312 27 0 0 chr11 116849480 116849516 -4994340 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 1476 762 224 52 42 chr11 116850578 116850769 -4993087 + B3A SINE B2 1 193 -5 8 1476 1626 16 27 0 chr11 116850793 116850979 -4992877 + B2_Mm1a SINE B2 2 192 -1 8 1476 183 80 0 0 chr11 116850986 116851011 -4992845 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1476 669 148 72 24 chr11 116851021 116851132 -4992724 + B1_Mus1 SINE Alu 18 137 -11 8 1476 1159 75 7 0 chr11 116851132 116851278 -4992578 + B1_Mm SINE Alu 1 147 0 8 1476 669 148 72 24 chr11 116851278 116851291 -4992565 + B1_Mus1 SINE Alu 138 148 0 8 1476 590 228 31 0 chr11 116851474 116851601 -4992255 + ID_B1 SINE B4 86 216 -8 8 1476 1133 202 102 68 chr11 116852025 116852159 -4991697 - RMER16 LTR ERVK -9 524 396 8 1476 1429 84 10 10 chr11 116852159 116852351 -4991505 - B2_Mm2 SINE B2 -2 193 2 8 1476 1133 188 68 78 chr11 116852351 116852563 -4991293 - RMER16 LTR ERVK -138 395 4 8 1476 323 289 124 0 chr11 116852743 116852864 -4990992 - MTD LTR MaLR -16 403 268 8 1476 381 307 62 17 chr11 116852982 116853161 -4990695 + LTR37A LTR ERV1 236 422 -4 8 1476 1839 180 48 13 chr11 116853639 116854011 -4989845 + MTD LTR MaLR 18 402 -17 8 1476 323 298 48 0 chr11 116854327 116854411 -4989445 - RSINE1 SINE B4 -28 137 50 8 1476 560 189 0 26 chr11 116854432 116854584 -4989272 + CT-rich Low_complexity Low_complexity 1 148 0 8 1476 601 271 26 0 chr11 116854886 116855037 -4988819 - ID_B1 SINE B4 -15 209 55 8 1476 362 214 0 0 chr11 116855844 116855914 -4987942 - ID4_ SINE ID -1 82 13 8 1476 259 256 38 13 chr11 116856733 116856812 -4987044 + MIRb SINE MIR 50 130 -138 8 1476 781 296 51 40 chr11 116857082 116857335 -4986521 + B4 SINE B4 12 267 -25 8 1476 811 216 87 0 chr11 116857828 116858013 -4985843 + B3 SINE B2 4 204 -12 8 1476 221 139 23 0 chr11 116858638 116858681 -4985175 + CT-rich Low_complexity Low_complexity 1 44 0 8 1476 483 246 79 0 chr11 116858685 116858811 -4985045 + B3A SINE B2 1 136 -62 8 1476 336 24 0 0 chr11 116858811 116858852 -4985004 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1476 639 225 54 0 chr11 116858918 116859047 -4984809 + MTE2b LTR MaLR 1 136 -243 8 1476 603 260 46 13 chr11 116859047 116859070 -4984786 + MT2A LTR ERVL 1 157 -376 8 1476 360 252 357 42 chr11 116859343 116859550 -4984306 - B4A SINE B4 -7 285 14 8 1476 550 316 104 45 chr11 116859552 116859774 -4984082 - B4A SINE B4 -57 235 1 8 1476 260 312 0 0 chr11 116860435 116860512 -4983344 + B3A SINE B2 121 197 -1 8 1476 228 135 0 0 chr11 116860546 116860583 -4983273 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1476 1288 34 0 0 chr11 116860604 116860752 -4983104 + B1_Mus1 SINE Alu 1 148 0 8 1476 3101 29 0 0 chr11 116860861 116861207 -4982649 - ORR1A0 LTR MaLR 0 346 1 8 1476 338 202 19 39 chr11 116862783 116862886 -4980970 + C-rich Low_complexity Low_complexity 2 102 0 8 1476 232 272 12 36 chr11 116863111 116863195 -4980661 - LTR81C LTR ERV1? -210 943 862 8 1476 236 308 61 15 chr11 116863696 116863828 -4980028 + MIRb SINE MIR 15 152 -116 8 1476 330 348 0 0 chr11 116864129 116864270 -4979586 + G-rich Low_complexity Low_complexity 1 141 0 8 1476 1352 96 27 0 chr11 116864367 116864555 -4979301 - B2_Mm2 SINE B2 -2 193 1 8 1476 535 258 82 65 chr11 116864562 116864732 -4979124 - ID_B1 SINE B4 -20 204 32 8 1476 239 310 28 0 chr11 116864688 116864759 -4979097 - BC1_Mm scRNA scRNA -78 74 2 8 1476 209 174 43 0 chr11 116865616 116865662 -4978194 + A-rich Low_complexity Low_complexity 2 49 0 8 1476 297 299 56 9 chr11 116865758 116865866 -4977990 + Lx8 LINE L1 7153 7265 -208 8 1476 1156 269 41 25 chr11 116866669 116866986 -4976870 + MTE2a LTR MaLR 58 379 0 8 1476 485 250 61 102 chr11 116867064 116867199 -4976657 - MTEb LTR MaLR -2 377 241 8 1476 753 12 0 0 chr11 116867199 116867285 -4976571 + (GA)n Simple_repeat Simple_repeat 1 86 0 8 1476 485 250 61 102 chr11 116867285 116867345 -4976511 - MTEb LTR MaLR -139 240 190 8 1476 667 210 57 0 chr11 116867339 116867496 -4976360 - MTEb LTR MaLR -139 240 75 8 1476 581 254 215 11 chr11 116868062 116868253 -4975603 - B4A SINE B4 -13 279 50 8 1476 982 244 15 0 chr11 116868301 116868506 -4975350 - B3 SINE B2 -8 208 1 8 1476 261 0 0 0 chr11 116868523 116868552 -4975304 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 1476 877 164 12 25 chr11 116870167 116870330 -4973526 + B2_Mm2 SINE B2 3 163 -32 8 1476 986 125 0 0 chr11 116870359 116870503 -4973353 - B1_Mus1 SINE Alu -3 145 2 8 1476 268 229 33 0 chr11 116870737 116870798 -4973058 + PB1D7 SINE Alu 2 64 -56 8 1476 252 194 0 48 chr11 116870901 116870968 -4972888 + PB1D9 SINE Alu 71 142 -7 8 1476 430 228 19 12 chr11 116870969 116871129 -4972727 + GA-rich Low_complexity Low_complexity 1 161 0 8 1476 584 181 16 38 chr11 116871140 116871324 -4972532 + GA-rich Low_complexity Low_complexity 1 180 0 8 1476 276 250 12 24 chr11 116871710 116871792 -4972064 - RSINE1 SINE B4 0 165 85 8 1476 830 251 102 104 chr11 116871997 116872399 -4971457 + MTE2a LTR MaLR 18 405 -14 8 1476 365 248 16 103 chr11 116872432 116872558 -4971298 + PB1D10 SINE Alu 1 115 -2 8 1476 1215 206 0 9 chr11 116872649 116872860 -4970996 + B3 SINE B2 1 209 -7 8 1476 629 254 28 0 chr11 116872941 116873083 -4970773 + RSINE1 SINE B4 2 147 -18 8 1476 266 315 101 36 chr11 116873265 116873297 -4970559 + L1MEe LINE L1 1609 1643 -1039 8 1476 2530 141 25 12 chr11 116873297 116873699 -4970157 - MTB_Mm LTR MaLR 0 407 1 8 1476 326 331 102 23 chr11 116873699 116873923 -4969933 + L1MEe LINE L1 1594 1838 -4503 8 1476 303 283 108 59 chr11 116873955 116874145 -4969711 + L1MEe LINE L1 2136 2335 -4173 8 1476 1399 93 0 35 chr11 116874145 116874346 -4969510 + B2_Mm2 SINE B2 2 195 0 8 1476 303 283 108 59 chr11 116874346 116874358 -4969498 + L1MEe LINE L1 2336 2347 -4161 8 1476 2025 149 35 9 chr11 116874436 116874781 -4969075 + ORR1B1 LTR MaLR 41 394 0 8 1476 1316 259 95 14 chr11 116874781 116875137 -4968719 - MTD LTR MaLR -32 387 3 8 1476 784 223 0 0 chr11 116875573 116875721 -4968135 + B1_Mur1 SINE Alu 2 149 0 8 1476 1348 58 17 28 chr11 116875739 116875918 -4967938 + B2_Mm2 SINE B2 2 178 -17 8 1476 191 36 0 35 chr11 116875918 116875947 -4967909 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1476 406 243 150 0 chr11 116876040 116876180 -4967676 + B3A SINE B2 2 162 -36 8 1476 499 269 35 70 chr11 116876192 116876392 -4967464 + B3A SINE B2 1 193 -5 8 1476 420 20 0 0 chr11 116876392 116876441 -4967415 + (CATA)n Simple_repeat Simple_repeat 2 50 0 8 1476 943 176 0 0 chr11 116876455 116876603 -4967253 + B1_Mur4 SINE Alu 2 149 -1 8 1476 574 220 28 0 chr11 116876839 116876948 -4966908 + RSINE1 SINE B4 11 122 -43 8 1476 405 0 0 0 chr11 116876972 116877017 -4966839 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 8 1476 780 123 0 8 chr11 116877024 116877147 -4966709 + B1_Mus1 SINE Alu 26 147 -1 8 1476 242 342 17 17 chr11 116877210 116877326 -4966530 + (TGGA)n Simple_repeat Simple_repeat 4 119 0 8 1476 645 215 20 23 chr11 116877360 116877665 -4966191 + (TGGA)n Simple_repeat Simple_repeat 1 303 0 8 1476 247 281 44 22 chr11 116877931 116878022 -4965834 - MER90a LTR ERV1 -6 608 516 8 1476 591 290 103 50 chr11 116877950 116878291 -4965565 - MER74A LTR ERVL -52 506 148 8 1476 326 274 63 0 chr11 116879128 116879223 -4964633 + ORR1E LTR MaLR 9 109 -250 8 1476 240 121 0 15 chr11 116879610 116879655 -4964201 - tRNA-Tyr-TAT tRNA tRNA -3 73 32 8 1476 368 179 42 109 chr11 116880203 116880322 -4963534 + L1M4b LINE L1 2196 2306 -5028 8 1476 649 232 134 11 chr11 116880341 116880520 -4963336 + ID_B1 SINE B4 2 202 -22 8 1476 396 0 0 0 chr11 116880525 116880569 -4963287 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1476 291 54 0 0 chr11 116880569 116880605 -4963251 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1476 579 346 65 3 chr11 116881202 116881492 -4962364 - MLT1A0 LTR MaLR -20 345 38 9 1476 647 284 17 208 chr11 116882175 116882209 -4961647 - B3A SINE B2 -1 215 188 9 1476 1404 69 17 0 chr11 116882209 116882383 -4961473 - B2_Mm2 SINE B2 -18 177 1 9 1476 647 246 32 32 chr11 116882383 116882562 -4961294 - B3A SINE B2 -5 193 13 9 1476 671 260 122 20 chr11 116882597 116882793 -4961063 - ID_B1 SINE B4 -7 217 2 9 1476 364 287 85 20 chr11 116882799 116882952 -4960904 - MIRb SINE MIR -58 210 48 9 1476 249 57 0 0 chr11 116883440 116883475 -4960381 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1476 2447 93 6 3 chr11 116884017 116884339 -4959517 - ORR1A2 LTR MaLR 0 327 5 9 1476 584 259 50 28 chr11 116884344 116884523 -4959333 + B4A SINE B4 107 289 -3 9 1476 396 0 0 0 chr11 116884554 116884598 -4959258 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1476 1192 176 44 10 chr11 116884921 116885127 -4958729 + B3 SINE B2 1 213 -3 9 1476 693 141 104 71 chr11 116885133 116885316 -4958540 + B2_Mm2 SINE B2 4 192 -3 9 1476 2846 188 106 39 chr11 116885325 116885482 -4958374 + RMER12 LTR ERVK 1 154 -1250 9 1476 1423 89 0 20 chr11 116885482 116885677 -4958179 - B2_Mm2 SINE B2 -2 193 3 9 1476 3677 128 24 13 chr11 116885677 116886362 -4957494 + RMER12 LTR ERVK 147 766 -556 9 1476 243 0 0 0 chr11 116886363 116886390 -4957466 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1476 605 183 39 19 chr11 116886417 116886573 -4957283 + RMER12 LTR ERVK 1157 1315 -7 9 1476 830 197 21 0 chr11 116886574 116886716 -4957140 + B1_Mur1 SINE Alu 5 149 0 9 1476 324 0 0 0 chr11 116887105 116887141 -4956715 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1476 850 249 46 0 chr11 116887760 116887957 -4955899 + ID_B1 SINE B4 5 210 -14 9 1476 272 152 0 0 chr11 116888507 116888553 -4955303 - B3A SINE B2 -151 47 2 9 1476 390 21 0 0 chr11 116888710 116888757 -4955099 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1476 331 222 141 5 chr11 116889016 116889112 -4954744 - B4A SINE B4 -137 155 47 9 1476 673 292 76 10 chr11 116890834 116891031 -4952825 + B4A SINE B4 1 210 -82 9 1476 433 272 48 0 chr11 116891086 116891189 -4952667 + PB1D10 SINE Alu 2 109 -8 9 1476 291 85 0 0 chr11 116891932 116891979 -4951877 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1476 1475 172 42 11 chr11 116892622 116892976 -4950880 + MTD LTR MaLR 1 398 -23 9 1476 839 269 16 5 chr11 116893200 116893394 -4950462 + ID_B1 SINE B4 17 212 -12 9 1476 733 267 114 35 chr11 116893420 116893762 -4950094 + MTE2a LTR MaLR 6 374 -5 9 1476 510 17 0 0 chr11 116894041 116894100 -4949756 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 9 1476 351 248 78 14 chr11 116894218 116894347 -4949509 + MTEb LTR MaLR 43 172 -207 9 1476 1614 179 58 29 chr11 116894385 116894566 -4949290 - ORR1D1 LTR MaLR -17 357 172 9 1476 252 77 0 0 chr11 116894566 116894605 -4949251 + (ACTG)n Simple_repeat Simple_repeat 3 41 0 9 1476 1614 179 58 29 chr11 116894605 116894769 -4949087 - ORR1D1 LTR MaLR -203 171 4 9 1476 360 0 0 0 chr11 116894927 116894967 -4948889 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1476 561 276 67 120 chr11 116894967 116895098 -4948758 - B4A SINE B4 -23 269 131 9 1476 266 50 0 24 chr11 116895098 116895139 -4948717 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 9 1476 561 276 67 120 chr11 116895139 116895161 -4948695 - B4A SINE B4 -162 130 110 9 1476 552 120 0 24 chr11 116895161 116895246 -4948610 + ID2 SINE ID 1 83 0 9 1476 1427 67 0 16 chr11 116895250 116895432 -4948424 - B2_Mm2 SINE B2 -13 182 4 9 1476 561 276 67 120 chr11 116895432 116895556 -4948300 - B4A SINE B4 -183 109 1 9 1476 23 54 0 0 chr11 116895860 116895897 -4947959 + AT_rich Low_complexity Low_complexity 1 37 0 9 1476 686 232 107 0 chr11 116895897 116896074 -4947782 - B3A SINE B2 0 198 3 9 1476 210 196 36 0 chr11 116896087 116896143 -4947713 + T-rich Low_complexity Low_complexity 3 60 0 9 1476 282 250 47 70 chr11 116896153 116896167 -4947689 - B1F SINE Alu -4 145 137 9 1476 423 0 0 0 chr11 116896167 116896214 -4947642 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 9 1476 282 250 47 70 chr11 116896214 116896285 -4947571 - B1F SINE Alu -13 136 62 9 1476 218 32 0 31 chr11 116896288 116896320 -4947536 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 9 1476 535 261 63 38 chr11 116896389 116896573 -4947283 - B3A SINE B2 -1 197 37 9 1476 273 183 56 0 chr11 116896583 116896654 -4947202 - B1F2 SINE Alu -72 77 3 9 1476 396 0 0 0 chr11 116897031 116897075 -4946781 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 1476 192 251 31 27 chr11 116897645 116897720 -4946136 - MIRb SINE MIR -64 198 121 9 1476 2092 101 97 0 chr11 116897930 116898228 -4945628 - ORR1A2 LTR MaLR 0 327 1 9 1476 203 167 0 0 chr11 116898783 116898819 -4945037 + C-rich Low_complexity Low_complexity 2 37 0 9 1476 2405 142 88 3 chr11 116898940 116899328 -4944528 - MTC LTR MaLR 0 421 1 9 1476 421 291 74 107 chr11 116899602 116899940 -4943916 - MTEa LTR MaLR -52 327 1 9 1476 227 241 0 0 chr11 116899972 116900030 -4943826 + C-rich Low_complexity Low_complexity 1 58 0 9 1476 436 191 32 178 chr11 116900046 116900151 -4943705 + B3 SINE B2 54 136 -80 9 1476 1601 37 27 0 chr11 116900151 116900339 -4943517 - B2_Mm1a SINE B2 0 193 1 9 1476 436 191 32 178 chr11 116900339 116900418 -4943438 + B3 SINE B2 137 211 -5 9 1476 512 250 16 31 chr11 116900993 116901121 -4942735 + B1F2 SINE Alu 6 131 -18 9 1476 484 364 66 73 chr11 116901516 116901742 -4942114 - LTR53 LTR ERVL 0 519 289 9 1476 376 186 184 15 chr11 116901742 116901849 -4942007 + RSINE1 SINE B4 3 124 -41 9 1476 432 0 0 0 chr11 116901849 116901897 -4941959 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1476 376 186 184 15 chr11 116901897 116901925 -4941931 + RSINE1 SINE B4 125 160 -5 9 1476 484 364 66 73 chr11 116901925 116902122 -4941734 - LTR53 LTR ERVL -231 288 99 9 1476 228 299 0 0 chr11 116902571 116902648 -4941208 + G-rich Low_complexity Low_complexity 1 77 0 9 1476 681 182 111 22 chr11 116902731 116902866 -4940990 + B1F SINE Alu 3 149 0 9 1476 823 89 161 0 chr11 116902959 116903083 -4940773 + B1_Mus1 SINE Alu 5 148 0 9 1476 432 0 0 0 chr11 116903190 116903238 -4940618 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1476 315 0 0 0 chr11 116903238 116903272 -4940584 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1476 200 305 12 0 chr11 116904289 116904371 -4939485 + (TG)n Simple_repeat Simple_repeat 1 83 0 9 1476 182 132 53 0 chr11 116904488 116904526 -4939330 + (CATG)n Simple_repeat Simple_repeat 1 40 0 9 1476 474 293 13 0 chr11 116905381 116905531 -4938325 + (TG)n Simple_repeat Simple_repeat 1 152 0 9 1476 638 269 65 103 chr11 116905560 116905850 -4938006 - B4A SINE B4 -11 281 3 9 1476 907 67 0 0 chr11 116905881 116906001 -4937855 + B2_Mm2 SINE B2 2 121 -74 9 1476 637 246 97 0 chr11 116906293 116906468 -4937388 - B3A SINE B2 -3 195 4 9 1476 513 0 0 0 chr11 116906522 116906579 -4937277 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 9 1476 1387 63 29 0 chr11 116906620 116906795 -4937061 - B2_Mm2 SINE B2 -14 181 2 9 1476 503 270 143 33 chr11 116907040 116907285 -4936571 + B4A SINE B4 11 282 -10 9 1476 210 246 16 47 chr11 116907304 116907368 -4936488 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1476 555 242 166 5 chr11 116907492 116907679 -4936177 + ID_B1 SINE B4 7 223 -1 9 1476 1277 20 7 0 chr11 116907682 116907828 -4936028 + B1_Mus2 SINE Alu 1 147 0 9 1476 248 277 149 0 chr11 116908656 116908750 -4935106 + PB1D10 SINE Alu 10 117 0 9 1476 294 29 0 0 chr11 116909560 116909595 -4934261 + (GA)n Simple_repeat Simple_repeat 2 36 0 9 1476 286 325 61 0 chr11 116910059 116910173 -4933683 + MER5A DNA MER1_type 9 129 -60 9 1476 25 51 0 0 chr11 116910313 116910352 -4933504 + AT_rich Low_complexity Low_complexity 1 39 0 9 1476 302 215 165 18 chr11 116910354 116910438 -4933418 - B3 SINE B2 -2 214 121 9 1476 351 0 0 0 chr11 116910438 116910477 -4933379 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1476 302 215 165 18 chr11 116910477 116910501 -4933355 - B3 SINE B2 -96 120 90 9 1476 927 295 33 11 chr11 116910656 116910930 -4932926 + B4A SINE B4 3 282 -10 9 1476 1216 151 11 0 chr11 116910964 116911150 -4932706 + B2_Mm1t SINE B2 1 188 -5 9 1476 288 369 38 38 chr11 116911232 116911415 -4932441 - MER2 DNA MER2_type -162 183 1 9 1476 275 284 74 41 chr11 116911833 116911954 -4931902 + MER5B DNA MER1_type 9 133 -45 9 1476 945 212 33 38 chr11 116911976 116912187 -4931669 - B3 SINE B2 -2 214 5 9 1476 552 238 61 7 chr11 116912252 116912400 -4931456 - B3A SINE B2 -30 168 13 9 1476 593 269 40 0 chr11 116912760 116912909 -4930947 + B4A SINE B4 56 210 -82 9 1476 686 172 8 30 chr11 116912913 116913045 -4930811 + B1_Mur2 SINE Alu 1 129 -20 9 1476 225 132 0 0 chr11 116913057 116913095 -4930761 + (ATG)n Simple_repeat Simple_repeat 3 40 0 9 1476 749 159 313 0 chr11 116913096 116913259 -4930597 + B3 SINE B2 3 216 0 9 1476 1685 131 229 6 chr11 116913305 116913642 -4930214 + MTC LTR MaLR 3 414 -7 9 1476 1012 103 7 14 chr11 116913643 116913791 -4930065 + B1_Mus2 SINE Alu 1 147 0 9 1476 1403 66 33 6 chr11 116913825 116914007 -4929849 + B2_Mm2 SINE B2 2 188 -7 9 1476 236 350 10 10 chr11 116914041 116914081 -4929775 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1476 3477 34 0 117 chr11 116914081 116914575 -4929281 - RLTR10C LTR ERVK 0 436 1 9 1476 236 350 10 10 chr11 116914575 116914638 -4929218 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1476 513 335 97 29 chr11 116914716 116915065 -4928791 - MLT1E2 LTR MaLR -23 657 307 9 1476 547 253 144 23 chr11 116915098 116915141 -4928715 - B3A SINE B2 -3 195 154 9 1476 411 21 0 0 chr11 116915141 116915189 -4928667 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1476 547 253 144 23 chr11 116915189 116915319 -4928537 - B3A SINE B2 -45 153 2 9 1476 1399 101 5 0 chr11 116915395 116915583 -4928273 - B2_Mm1a SINE B2 -3 190 2 9 1476 226 258 75 11 chr11 116915794 116915888 -4927968 - B3 SINE B2 0 216 117 1 1476 289 331 110 0 chr11 116916064 116916191 -4927665 - MER77 LTR ERVL -365 242 102 1 1477 403 186 92 10 chr11 116916386 116916484 -4927372 - B3A SINE B2 -92 106 1 1 1477 206 118 0 0 chr11 116916834 116916868 -4926988 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1477 1278 27 0 7 chr11 116916869 116917016 -4926840 - B1_Mm SINE Alu 0 147 2 1 1477 1303 77 5 47 chr11 116917025 116917215 -4926641 - B2_Mm1t SINE B2 -8 185 4 1 1477 1064 242 122 62 chr11 116917675 116918027 -4925829 + MTE2a LTR MaLR 1 373 -6 1 1477 376 267 22 0 chr11 116918751 116918841 -4925015 + B4A SINE B4 5 96 -196 1 1477 430 265 65 50 chr11 116918879 116919165 -4924691 - MLT1C LTR MaLR -4 501 118 1 1477 2657 110 32 0 chr11 116919165 116919565 -4924291 + MTC LTR MaLR 1 413 -8 1 1477 278 256 11 55 chr11 116919568 116919659 -4924197 - MLT1C LTR MaLR -347 120 34 1 1477 291 93 0 0 chr11 116919695 116919738 -4924118 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1477 211 175 0 24 chr11 116919738 116919779 -4924077 - RSINE1 SINE B4 -48 117 78 1 1477 774 265 36 18 chr11 116920346 116920569 -4923287 - MLT1B LTR MaLR 0 390 164 1 1477 522 188 144 97 chr11 116920597 116920792 -4923064 - B4 SINE B4 -87 205 2 1 1477 248 215 138 12 chr11 116920798 116920878 -4922978 - MLT1B LTR MaLR -221 169 80 1 1477 29 22 0 21 chr11 116920991 116921023 -4922833 + AT_rich Low_complexity Low_complexity 1 32 0 1 1477 1157 62 0 14 chr11 116921023 116921171 -4922685 + B1_Mus2 SINE Alu 2 147 0 1 1477 29 22 0 21 chr11 116921171 116921185 -4922671 + AT_rich Low_complexity Low_complexity 1 14 0 1 1477 274 245 55 101 chr11 116921185 116921294 -4922562 - MLT1B LTR MaLR -360 107 4 1 1477 21 0 0 0 chr11 116922094 116922115 -4921741 + GC_rich Low_complexity Low_complexity 1 21 0 1 1477 285 89 0 0 chr11 116922483 116922528 -4921328 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1477 1268 41 0 0 chr11 116922528 116922675 -4921181 - B1_Mm SINE Alu 0 147 1 1 1477 1010 165 64 20 chr11 116922731 116922935 -4920921 + B3 SINE B2 4 216 0 1 1477 1482 87 0 5 chr11 116923105 116923301 -4920555 - B2_Mm2 SINE B2 0 195 1 1 1477 301 253 15 51 chr11 116923552 116923662 -4920194 + MLT1A1 LTR MaLR 272 395 -13 1 1477 212 100 0 0 chr11 116923962 116923992 -4919864 + B2_Mm2 SINE B2 42 71 -124 1 1477 1155 249 50 106 chr11 116924794 116925238 -4918618 - MTD LTR MaLR 0 419 1 1 1477 212 0 36 0 chr11 116925887 116925915 -4917941 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1477 1067 109 0 0 chr11 116925915 116926053 -4917803 - B1_Mus1 SINE Alu -10 138 1 1 1477 403 248 189 0 chr11 116926137 116926290 -4917566 + B3A SINE B2 1 182 -16 1 1477 666 189 0 0 chr11 116926306 116926486 -4917370 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1477 363 281 59 46 chr11 116926508 116926661 -4917195 + ID_B1 SINE B4 66 220 -4 1 1477 498 235 103 0 chr11 116926669 116926805 -4917051 + RSINE1 SINE B4 11 160 -5 1 1477 1378 75 32 5 chr11 116926901 116927088 -4916768 - B2_Mm2 SINE B2 -3 192 1 1 1477 763 240 77 0 chr11 116927210 116927393 -4916463 - B3A SINE B2 -1 197 1 1 1477 1268 89 78 0 chr11 116927428 116927608 -4916248 + B2_Mm2 SINE B2 2 195 0 1 1477 383 332 77 34 chr11 116927661 116927895 -4915961 + L1M5 LINE L1 4463 4706 -1440 1 1477 573 224 37 15 chr11 116928268 116928404 -4915452 - MTE2a LTR MaLR -9 370 232 1 1477 467 211 90 174 chr11 116929640 116929852 -4914004 - MTE2a LTR MaLR -183 196 3 1 1477 826 147 21 10 chr11 116929855 116930026 -4913830 + B3 SINE B2 3 180 -15 1 1477 1405 79 17 0 chr11 116930026 116930203 -4913653 + B2_Mm2 SINE B2 1 180 -15 1 1477 204 97 0 0 chr11 116930203 116930234 -4913622 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 1 1477 1554 21 5 55 chr11 116930265 116930464 -4913392 - B2_Mm1a SINE B2 -4 189 1 1 1477 483 285 15 0 chr11 116930612 116930742 -4913114 - ORR1E LTR MaLR -225 134 3 1 1477 266 333 28 0 chr11 116930816 116930888 -4912968 - ID4_ SINE ID -2 81 8 1 1477 469 238 0 9 chr11 116930885 116930991 -4912865 - PB1D10 SINE Alu -5 112 8 1 1477 1407 57 0 20 chr11 116931104 116931300 -4912556 + B2_Mm1a SINE B2 2 193 0 1 1477 325 194 250 69 chr11 116931329 116931445 -4912411 - ORR1D1 LTR MaLR 0 384 248 1 1477 337 214 34 45 chr11 116931448 116931536 -4912320 - ORR1D1 LTR MaLR -287 87 1 1 1477 422 191 200 0 chr11 116931537 116931642 -4912214 + B4A SINE B4 107 232 -60 1 1477 367 232 0 12 chr11 116931685 116931768 -4912088 - RSINE1 SINE B4 -80 85 4 1 1477 372 214 0 0 chr11 116931803 116931873 -4911983 + B1_Mus2 SINE Alu 71 140 -7 1 1477 1075 234 184 23 chr11 116932421 116932775 -4911081 + MT2A LTR ERVL 116 526 -7 1 1477 649 221 95 0 chr11 116932865 116933023 -4910833 + RMER5 LTR ERV1 201 373 -161 1 1477 636 247 7 7 chr11 116933017 116933164 -4910692 - B3 SINE B2 -10 206 60 1 1477 272 0 79 0 chr11 116933198 116933236 -4910620 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 1 1477 1141 62 7 20 chr11 116933252 116933401 -4910455 - B1_Mm SINE Alu 0 147 1 1 1477 410 247 0 0 chr11 116933770 116933855 -4910001 + PB1 SINE Alu 22 106 -21 1 1477 945 143 0 26 chr11 116934023 116934174 -4909682 - B1_Mur4 SINE Alu 0 150 4 1 1477 545 190 28 24 chr11 116934411 116934539 -4909317 + ID_B1 SINE B4 80 204 -20 1 1477 886 237 132 54 chr11 116934550 116934867 -4908989 + RMER5 LTR ERV1 13 354 -180 1 1477 581 242 156 21 chr11 116934867 116935053 -4908803 - B3 SINE B2 -4 212 2 1 1477 1508 68 5 0 chr11 116935094 116935284 -4908572 - B2_Mm1a SINE B2 -1 192 2 1 1477 3498 128 84 23 chr11 116935375 116936069 -4907787 - RMER17A LTR ERVK -15 736 1 1 1477 387 233 7 194 chr11 116936070 116936134 -4907722 + RMER5 LTR ERV1 418 472 -62 1 1477 957 46 105 15 chr11 116936134 116936267 -4907589 + B1_Mm SINE Alu 1 145 -2 1 1477 387 233 7 194 chr11 116936267 116936325 -4907531 + RMER5 LTR ERV1 473 519 -15 1 1477 3646 38 28 2 chr11 116936325 116936750 -4907106 - RLTR10C LTR ERVK 0 436 1 1 1477 387 233 7 194 chr11 116936750 116936770 -4907086 + RMER5 LTR ERV1 520 534 0 1 1477 624 286 170 15 chr11 116937011 116937270 -4906586 - RMER15 LTR ERVL -1 574 276 1 1477 294 229 60 192 chr11 116937277 116937428 -4906428 - RMER15 LTR ERVL -444 131 1 1 1477 672 262 60 27 chr11 116938857 116939041 -4904815 - B3 SINE B2 -5 193 4 1 1477 668 262 21 16 chr11 116939057 116939247 -4904609 - ID_B1 SINE B4 -9 215 25 1 1477 344 236 112 0 chr11 116940293 116940382 -4903474 - PB1D9 SINE Alu -21 99 1 1 1477 567 143 0 0 chr11 116940727 116940825 -4903031 - B3 SINE B2 -118 98 1 1 1477 243 290 37 65 chr11 116941424 116941531 -4902325 + MIRc SINE MIR 18 124 -144 1 1477 501 231 91 0 chr11 116942117 116942238 -4901618 - B1F1 SINE Alu -10 139 8 1 1477 233 285 10 31 chr11 116942252 116942350 -4901506 - PB1D7 SINE Alu -7 120 27 1 1477 895 239 32 36 chr11 116942764 116943012 -4900844 + B4 SINE B4 2 248 -44 1 1477 736 155 291 6 chr11 116943412 116943587 -4900269 + URR1B DNA MER1_type 1 225 0 1 1477 501 17 0 0 chr11 116944340 116944398 -4899458 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1477 228 237 78 13 chr11 116945051 116945128 -4898728 - ID4 SINE ID 0 83 2 1 1477 1147 58 0 0 chr11 116945197 116945334 -4898522 - B1_Mus1 SINE Alu -11 137 1 1 1477 398 213 62 29 chr11 116945991 116946123 -4897733 + B3A SINE B2 1 143 -52 1 1477 230 0 33 0 chr11 116946123 116946153 -4897703 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1477 362 238 113 70 chr11 116946153 116946187 -4897669 + B2_Mm2 SINE B2 144 175 -20 1 1477 1409 102 0 5 chr11 116946187 116946375 -4897481 + B2_Mm2 SINE B2 1 187 -8 1 1477 362 238 113 70 chr11 116946375 116946392 -4897464 + B2_Mm2 SINE B2 176 192 -3 1 1477 683 243 50 0 chr11 116946899 116947080 -4896776 - B3 SINE B2 0 216 27 1 1477 752 175 28 28 chr11 116947112 116947253 -4896603 - B1_Mur3 SINE Alu -8 141 1 1 1477 694 199 27 27 chr11 116947253 116947402 -4896454 - B1_Mur4 SINE Alu 0 150 1 1 1477 219 143 0 0 chr11 116947406 116947441 -4896415 - B3 SINE B2 -180 36 2 1 1477 298 272 42 42 chr11 116947605 116947701 -4896155 - MER67C LTR ERV1 -3 708 613 1 1477 1714 26 0 0 chr11 116948108 116948301 -4895555 + B2_Mm1a SINE B2 1 193 0 1 1477 405 292 44 30 chr11 116948786 116948959 -4894897 + ID_B1 SINE B4 96 274 -18 1 1477 751 231 67 52 chr11 116949106 116949316 -4894540 - B3 SINE B2 -3 213 1 1 1477 236 185 93 0 chr11 116949629 116949683 -4894173 - MTEa LTR MaLR 0 379 321 1 1477 399 298 66 37 chr11 116949686 116949822 -4894034 + B3A SINE B2 12 151 -47 1 1477 231 36 0 0 chr11 116949826 116949854 -4894002 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1477 247 265 206 0 chr11 116949866 116949968 -4893888 - MTEa LTR MaLR -44 335 213 1 1477 393 333 0 0 chr11 116950028 116950145 -4893711 - MTEa LTR MaLR -259 120 4 1 1477 443 281 131 32 chr11 116950205 116950517 -4893339 + MER92B LTR ERV1 180 522 -114 1 1477 356 0 23 0 chr11 116950571 116950615 -4893241 + (CAAT)n Simple_repeat Simple_repeat 4 48 0 1 1477 210 71 0 0 chr11 116950757 116950785 -4893071 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1477 309 221 29 0 chr11 116950888 116950956 -4892900 - ID4 SINE ID -9 74 5 1 1477 255 250 31 0 chr11 116951370 116951434 -4892422 + (CCTG)n Simple_repeat Simple_repeat 3 68 0 1 1477 880 123 46 0 chr11 116951914 116952044 -4891812 - B1_Mur2 SINE Alu -13 136 1 1 1477 228 271 47 78 chr11 116952315 116952443 -4891413 - RSINE1 SINE B4 0 165 42 1 1477 881 165 308 9 chr11 116952435 116952770 -4891086 + RMER10A LTR ERVL 6 440 -2 1 1477 575 254 14 27 chr11 116953653 116953799 -4890057 - B1_Mur1 SINE Alu 0 149 6 1 1477 321 357 41 71 chr11 116953660 116953829 -4890027 - B4 SINE B4 -69 223 60 1 1477 423 0 0 0 chr11 116953865 116953912 -4889944 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1477 635 186 0 18 chr11 116954457 116954790 -4889066 + CT-rich Low_complexity Low_complexity 1 326 0 1 1477 698 180 64 7 chr11 116955048 116955188 -4888668 + B1_Mus1 SINE Alu 1 148 0 1 1477 414 0 0 0 chr11 116955204 116955250 -4888606 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1477 544 200 18 0 chr11 116955250 116955360 -4888496 - ID_B1 SINE B4 -18 206 95 1 1477 1208 194 131 4 chr11 116956432 116956771 -4887085 + MTD LTR MaLR 1 407 -12 1 1477 733 261 6 0 chr11 116957008 116957173 -4886683 + ID_B1 SINE B4 20 185 -39 1 1477 231 240 107 0 chr11 116958854 116958929 -4884927 + ID4 SINE ID 1 83 0 1 1477 202 152 21 21 chr11 116958950 116958997 -4884859 + (TGGG)n Simple_repeat Simple_repeat 1 47 0 1 1477 387 233 44 15 chr11 116959323 116959458 -4884398 + CT-rich Low_complexity Low_complexity 1 139 0 1 1477 414 252 0 0 chr11 116959873 116960020 -4883836 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 1477 699 289 34 51 chr11 116960100 116960395 -4883461 - B4A SINE B4 -2 290 1 1 1477 417 177 78 68 chr11 116960409 116960512 -4883344 - PB1D7 SINE Alu -2 118 15 1 1477 315 0 0 0 chr11 116960512 116960547 -4883309 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1477 200 176 0 0 chr11 116961029 116961063 -4882793 + G-rich Low_complexity Low_complexity 1 34 0 1 1477 577 224 51 62 chr11 116961080 116961226 -4882630 + MTEa LTR MaLR 6 153 -226 1 1477 1318 135 67 0 chr11 116961226 116961434 -4882422 - URR1A DNA MER1_type 0 226 5 1 1477 577 224 51 62 chr11 116961434 116961463 -4882393 + MTEa LTR MaLR 154 178 -201 1 1477 440 298 192 39 chr11 116961492 116961726 -4882130 + MTE2b LTR MaLR 4 273 -106 1 1477 269 316 37 63 chr11 116961779 116961968 -4881888 + MTEa LTR MaLR 196 379 0 1 1477 1272 34 0 0 chr11 116962424 116962571 -4881285 - B1_Mus2 SINE Alu 0 147 1 1 1477 294 302 151 0 chr11 116963480 116963586 -4880270 + RSINE1 SINE B4 3 124 -41 1 1477 468 62 0 0 chr11 116963587 116963651 -4880205 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1477 449 286 78 59 chr11 116964175 116964394 -4879462 - ID_B1 SINE B4 0 224 2 1 1477 667 81 10 0 chr11 116964490 116964589 -4879267 - B2_Mm2 SINE B2 -88 107 8 1 1477 198 71 0 0 chr11 116964589 116964617 -4879239 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1477 1126 52 0 0 chr11 116964618 116964753 -4879103 - B1_Mus1 SINE Alu -12 136 2 1 1477 226 163 0 0 chr11 116966354 116966397 -4877459 - ID_B1 SINE B4 -66 158 116 1 1477 766 241 68 5 chr11 116966396 116966588 -4877268 + ID_B1 SINE B4 9 212 -12 1 1477 1197 81 0 0 chr11 116967497 116967645 -4876211 + B1_Mus1 SINE Alu 1 148 0 1 1477 667 247 6 31 chr11 116967681 116967840 -4876016 + RSINE1 SINE B4 11 165 0 1 1477 261 190 0 17 chr11 116967840 116967899 -4875957 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1477 243 299 128 18 chr11 116967945 116968054 -4875802 - RSINE1 SINE B4 -42 123 3 1 1477 407 308 24 42 chr11 116968101 116968267 -4875589 - RSINE1 SINE B4 0 165 3 1 1477 549 0 0 0 chr11 116968753 116968814 -4875042 + (TTTTA)n Simple_repeat Simple_repeat 5 65 0 1 1477 1034 127 0 32 chr11 116968972 116969127 -4874729 - B1_Mur4 SINE Alu 0 150 1 1 1477 627 228 157 29 chr11 116969148 116969320 -4874536 - B3A SINE B2 0 198 5 1 1477 684 94 0 0 chr11 116969375 116969481 -4874375 + (TC)n Simple_repeat Simple_repeat 2 107 0 1 1477 225 0 0 0 chr11 116969481 116969505 -4874351 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1477 373 324 63 0 chr11 116969514 116969625 -4874231 - B1F2 SINE Alu -31 118 1 1 1477 303 279 139 80 chr11 116971348 116971494 -4872362 - B3A SINE B2 0 198 46 1 1477 1192 62 7 0 chr11 116971494 116971639 -4872217 - B1_Mus2 SINE Alu 0 147 2 1 1477 303 279 139 80 chr11 116971639 116971679 -4872177 - B3A SINE B2 -153 45 3 1 1477 606 218 7 29 chr11 116971692 116971829 -4872027 - B1_Mur3 SINE Alu -1 148 15 1 1477 1443 83 16 0 chr11 116972042 116972234 -4871622 - B2_Mm2 SINE B2 0 195 1 1 1477 1226 48 0 0 chr11 116972258 116972405 -4871451 + B1_Mus2 SINE Alu 1 147 0 1 1477 838 229 77 0 chr11 116972424 116972607 -4871249 - ID_B1 SINE B4 -21 203 7 1 1477 368 338 62 31 chr11 116972691 116972853 -4871003 + MLT1J LTR MaLR 7 173 -339 1 1477 180 0 0 0 chr11 116973169 116973189 -4870667 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1477 1270 41 0 0 chr11 116973189 116973336 -4870520 - B1_Mm SINE Alu 0 147 1 1 1477 1052 239 203 46 chr11 116973988 116974470 -4869386 - RMER4B LTR ERVK -27 558 1 1 1477 688 164 52 0 chr11 116974571 116974705 -4869151 - B1_Mur1 SINE Alu 0 149 9 1 1477 955 180 16 5 chr11 116974797 116974981 -4868875 - B3 SINE B2 0 216 31 1 1477 226 255 117 10 chr11 116975141 116975244 -4868612 - L1MC5 LINE L1 -596 7365 7252 1 1477 564 140 0 0 chr11 116975254 116975347 -4868509 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1477 991 73 51 7 chr11 116975348 116975485 -4868371 - B1_Mus1 SINE Alu -5 143 1 1 1477 434 317 198 11 chr11 116975492 116975760 -4868096 - MARNA DNA Mariner -233 353 36 1 1477 183 295 62 93 chr11 116979005 116979102 -4864754 - L4 LINE RTE -911 1118 1025 1 1477 232 259 0 0 chr11 116979383 116979437 -4864419 - 4.5SRNA scRNA scRNA -2 92 39 1 1477 416 200 0 12 chr11 116979394 116979475 -4864381 - PB1D10 SINE Alu -34 83 4 1 1477 279 263 80 93 chr11 116979475 116979544 -4864312 - MT2B LTR ERVL -359 241 94 1 1477 354 23 0 0 chr11 116980172 116980215 -4863641 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1477 558 0 0 0 chr11 116980337 116980399 -4863457 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1477 343 277 50 65 chr11 116980576 116980715 -4863141 + RSINE1 SINE B4 3 139 -26 1 1477 854 214 49 19 chr11 116983683 116983702 -4860154 - B3 SINE B2 -5 211 189 1 1477 246 32 0 0 chr11 116983702 116983733 -4860123 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1477 854 214 49 19 chr11 116983733 116983918 -4859938 - B3 SINE B2 -28 188 1 1 1477 281 281 22 11 chr11 116984090 116984180 -4859676 - PB1D10 SINE Alu -21 96 6 1 1477 1116 143 152 5 chr11 116984616 116984813 -4859043 + URR1A DNA MER1_type 1 226 0 1 1477 416 188 12 0 chr11 116985582 116985662 -4858194 + PB1 SINE Alu 27 107 -20 1 1477 198 0 0 0 chr11 116985695 116985717 -4858139 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 1 1477 502 172 40 0 chr11 116986192 116986291 -4857565 - B1_Mur4 SINE Alu 0 150 48 1 1477 191 32 65 0 chr11 116986296 116986327 -4857529 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1477 1276 56 87 22 chr11 116986394 116986577 -4857279 - B2_Mm2 SINE B2 0 195 1 1 1477 245 221 29 14 chr11 116987406 116987475 -4856381 - ID2 SINE ID 0 83 14 1 1477 421 243 121 0 chr11 116987485 116987625 -4856231 - L1MB3 LINE L1 -213 5970 5814 1 1477 570 219 71 21 chr11 116987629 116987769 -4856087 - B1_Mur1 SINE Alu 0 149 3 1 1477 333 239 140 11 chr11 116987896 116987989 -4855867 - L1MB3 LINE L1 -380 5800 5696 1 1477 1196 166 23 36 chr11 116988173 116988392 -4855464 - B3 SINE B2 0 216 1 1 1477 383 327 56 84 chr11 116989209 116989423 -4854433 - ID_B1 SINE B4 0 224 17 1 1477 355 222 20 29 chr11 116989910 116990012 -4853844 - PB1 SINE Alu -7 120 20 1 1477 435 38 0 0 chr11 116990098 116990151 -4853705 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1477 1259 40 0 13 chr11 116990154 116990304 -4853552 - B1_Mus1 SINE Alu 0 148 1 1 1477 351 141 164 4 chr11 116990683 116990765 -4853091 - PB1D7 SINE Alu -20 97 9 1 1477 180 0 0 0 chr11 116991002 116991022 -4852834 + (GCCTG)n Simple_repeat Simple_repeat 4 23 0 1 1477 278 315 108 0 chr11 116992145 116992256 -4851600 + PB1 SINE Alu 2 124 -3 1 1477 315 0 0 0 chr11 116992605 116992640 -4851216 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1477 1399 79 26 11 chr11 116992667 116992858 -4850998 - B2_Mm2 SINE B2 -1 194 1 1 1477 909 216 68 10 chr11 116993577 116993769 -4850087 - B3 SINE B2 -13 203 1 1 1477 658 203 149 33 chr11 116993803 116994017 -4849839 + 7SK RNA RNA 1 239 -92 1 1477 558 234 47 0 chr11 116994240 116994347 -4849509 + PB1D7 SINE Alu 1 112 -8 1 1477 251 262 77 10 chr11 116994382 116994486 -4849370 - L1MC1 LINE L1 -5 6328 6218 1 1477 407 209 9 0 chr11 116994833 116994948 -4848908 + CT-rich Low_complexity Low_complexity 2 117 0 1 1477 521 231 30 57 chr11 116994974 116995126 -4848730 - B1_Mur1 SINE Alu 0 149 11 1 1477 317 211 42 0 chr11 116995289 116995360 -4848496 - ID2 SINE ID -7 76 3 1 1477 374 299 44 15 chr11 116995719 116995855 -4848001 - RSINE1 SINE B4 -1 164 25 1 1477 251 140 0 20 chr11 116997581 116997632 -4846224 + CT-rich Low_complexity Low_complexity 3 52 0 1 1477 203 138 0 0 chr11 116997635 116997664 -4846192 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 1 1477 273 302 33 33 chr11 116997723 116997843 -4846013 - BC1_Mm scRNA scRNA -30 122 3 1 1477 240 159 0 0 chr11 116997995 116998039 -4845817 + B1_Mus2 SINE Alu 104 147 0 1 1477 786 170 230 0 chr11 116998531 116998696 -4845160 - B3 SINE B2 -12 204 2 1 1477 726 169 6 114 chr11 116998735 116998902 -4844954 - B1_Mur4 SINE Alu 0 150 2 1 1477 385 132 0 42 chr11 116998909 116998922 -4844934 - B2_Mm1a SINE B2 -20 173 163 1 1477 348 24 0 0 chr11 116998922 116998963 -4844893 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 1477 385 132 0 42 chr11 116998963 116999020 -4844836 - B2_Mm1a SINE B2 -31 162 106 1 1477 1719 31 0 0 chr11 116999053 116999246 -4844610 + B2_Mm1a SINE B2 1 193 0 1 1477 328 220 198 0 chr11 117000023 117000114 -4843742 + PB1D9 SINE Alu 2 110 -10 1 1477 341 288 0 0 chr11 117001752 117001832 -4842024 + ID_B1 SINE B4 145 224 0 2 1477 1026 58 0 0 chr11 117002057 117002194 -4841662 - B1_Mus1 SINE Alu 0 148 12 3 1477 230 276 65 76 chr11 117002097 117002281 -4841575 - ORR1B1-int LTR MaLR -755 754 573 4 1477 275 340 0 0 chr11 117002473 117002573 -4841283 - L1MD LINE L1 -1443 4703 4604 5 1477 506 231 73 15 chr11 117003300 117003436 -4840420 - B1F2 SINE Alu -5 144 1 6 1477 750 219 14 0 chr11 117003450 117003596 -4840260 - B1_Mur1 SINE Alu -1 148 1 7 1477 1113 65 0 7 chr11 117004315 117004455 -4839401 + B1_Mus1 SINE Alu 1 139 -9 8 1477 259 290 29 0 chr11 117004941 117005010 -4838846 - ID4_ SINE ID -12 71 1 9 1477 282 291 57 45 chr11 117005576 117005773 -4838083 - MIR SINE MIR -24 244 31 1 1477 1057 179 75 0 chr11 117007167 117007368 -4836488 - B3 SINE B2 0 216 1 1 1477 230 271 0 33 chr11 117007492 117007553 -4836303 - ID_B1 SINE B4 -71 153 95 1 1477 335 194 146 48 chr11 117007950 117008053 -4835803 + PB1D9 SINE Alu 1 113 -7 1 1477 435 276 43 0 chr11 117009013 117009129 -4834727 + B1_Mur1 SINE Alu 13 133 -16 1 1477 297 197 0 0 chr11 117010084 117010150 -4833706 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1477 481 290 33 3 chr11 117010824 117010980 -4832876 + ID_B1 SINE B4 80 241 -51 1 1477 197 180 20 0 chr11 117012370 117012420 -4831436 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1477 517 360 80 12 chr11 117012451 117012701 -4831155 - B4A SINE B4 0 292 26 1 1477 1302 20 0 0 chr11 117013357 117013503 -4830353 + B1_Mus2 SINE Alu 2 147 0 1 1477 225 0 0 0 chr11 117013573 117013598 -4830258 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 2 1477 331 216 31 83 chr11 117013603 117013699 -4830157 - PB1D10 SINE Alu -6 111 21 2 1477 219 307 53 0 chr11 117014039 117014114 -4829742 - ID2 SINE ID 0 83 5 2 1477 495 102 0 0 chr11 117015333 117015421 -4828435 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 2 1477 229 202 53 0 chr11 117015922 117016016 -4827840 + (CA)n Simple_repeat Simple_repeat 1 99 0 2 1477 219 175 25 0 chr11 117020017 117020057 -4823799 + CT-rich Low_complexity Low_complexity 1 41 0 2 1477 291 271 0 45 chr11 117020708 117020797 -4823059 + B1F SINE Alu 54 138 -11 2 1477 637 197 30 8 chr11 117021406 117021539 -4822317 - B1_Mus1 SINE Alu -7 141 6 2 1477 250 250 15 0 chr11 117021697 117021765 -4822091 + RSINE1 SINE B4 8 76 -89 2 1477 460 228 221 6 chr11 117022352 117022524 -4821332 + ID_B1 SINE B4 8 216 -8 2 1477 1048 23 0 0 chr11 117022539 117022669 -4821187 + B1_Mus2 SINE Alu 18 147 0 3 1477 596 200 123 0 chr11 117022731 117022861 -4820995 - B1_Mus2 SINE Alu -1 146 1 3 1477 224 340 155 0 chr11 117023103 117023200 -4820656 + RSINE1 SINE B4 38 149 -16 3 1477 405 0 0 0 chr11 117023211 117023256 -4820600 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1477 663 231 13 26 chr11 117023670 117023821 -4820035 - B1F SINE Alu 0 149 1 3 1477 582 306 129 0 chr11 117024063 117024256 -4819600 + ID_B1 SINE B4 1 218 -6 3 1477 910 244 29 123 chr11 117025344 117025694 -4818162 - MTEb LTR MaLR -9 370 54 3 1477 225 0 0 0 chr11 117025796 117025821 -4818035 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1477 675 182 71 21 chr11 117025821 117025961 -4817895 - B1_Mur3 SINE Alu 0 149 3 3 1477 1076 222 9 0 chr11 117026122 117026338 -4817518 + URR1B DNA MER1_type 8 225 0 3 1477 786 97 0 1 chr11 117027699 117027829 -4816027 + B1_Mus1 SINE Alu 1 130 -18 4 1477 315 0 0 0 chr11 117027874 117027909 -4815947 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1477 249 33 0 0 chr11 117028122 117028152 -4815704 + (CTCTG)n Simple_repeat Simple_repeat 2 31 0 4 1477 535 299 22 54 chr11 117028171 117028355 -4815501 + B3A SINE B2 5 182 -16 4 1477 508 180 0 0 chr11 117028355 117028461 -4815395 + PB1D9 SINE Alu 8 113 -7 4 1477 597 314 13 0 chr11 117028537 117028696 -4815160 + RSINE1 SINE B4 2 162 -3 4 1477 288 0 0 0 chr11 117028697 117028729 -4815127 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1477 446 206 0 56 chr11 117028744 117028852 -4815004 + ID_B1 SINE B4 123 224 0 4 1477 243 0 0 0 chr11 117028861 117028888 -4814968 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1477 911 233 0 11 chr11 117028920 117029111 -4814745 + B3 SINE B2 21 209 -7 4 1477 230 304 12 25 chr11 117029913 117029934 -4813922 + B4A SINE B4 67 86 -206 5 1477 431 317 42 0 chr11 117029934 117030054 -4813802 + B1F1 SINE Alu 1 125 -24 5 1477 755 279 111 17 chr11 117030080 117030310 -4813546 - MTE2a LTR MaLR -61 318 83 5 1477 234 91 0 0 chr11 117030310 117030343 -4813513 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1477 755 279 111 17 chr11 117030343 117030400 -4813456 - MTE2a LTR MaLR -297 82 6 5 1477 203 0 37 0 chr11 117030829 117030856 -4813000 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1477 363 268 10 20 chr11 117030857 117030956 -4812900 - B4 SINE B4 -27 265 168 5 1477 284 284 0 0 chr11 117031094 117031168 -4812688 + G-rich Low_complexity Low_complexity 1 74 0 5 1477 843 253 16 0 chr11 117032221 117032415 -4811441 - B3A SINE B2 0 198 2 5 1477 535 282 25 31 chr11 117033006 117033167 -4810689 + RSINE1 SINE B4 2 161 -4 5 1477 619 263 0 14 chr11 117033434 117033573 -4810283 + ID_B1 SINE B4 88 224 0 5 1477 880 191 313 82 chr11 117033987 117034437 -4809419 + RMER4B LTR ERVK 18 571 -14 6 1477 223 175 175 0 chr11 117034677 117034734 -4809122 - RSINE1 SINE B4 -21 144 78 6 1477 258 159 14 28 chr11 117035321 117035392 -4808464 + C-rich Low_complexity Low_complexity 6 75 0 6 1477 727 241 104 10 chr11 117035398 117035591 -4808265 - ID_B1 SINE B4 -2 222 12 6 1477 1190 282 52 61 chr11 117035762 117036207 -4807649 - RMER4A LTR ERVK -9 457 17 6 1477 552 298 46 54 chr11 117036281 117036522 -4807334 - ORR1E LTR MaLR -120 239 1 6 1477 623 152 19 19 chr11 117036670 117036777 -4807079 - PB1D9 SINE Alu -9 111 5 6 1477 468 308 58 6 chr11 117036828 117037001 -4806855 - B3A SINE B2 -16 182 1 6 1477 181 211 58 0 chr11 117037330 117037382 -4806474 + L2 LINE L2 3028 3082 -337 6 1477 307 328 11 39 chr11 117037892 117038070 -4805786 + (TATG)n Simple_repeat Simple_repeat 3 175 0 6 1477 413 349 7 0 chr11 117038080 117038232 -4805624 + (TG)n Simple_repeat Simple_repeat 2 154 0 7 1477 186 176 0 0 chr11 117038907 117038958 -4804898 + C-rich Low_complexity Low_complexity 1 51 0 7 1477 213 121 0 0 chr11 117038979 117039012 -4804844 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 7 1477 255 288 0 0 chr11 117039336 117039395 -4804461 - ID_B1 SINE B4 -18 206 148 7 1477 1501 157 126 13 chr11 117039353 117039692 -4804164 + MTC LTR MaLR 7 411 -8 7 1477 808 193 0 7 chr11 117040272 117040408 -4803448 - B1_Mur4 SINE Alu -14 136 2 7 1477 256 169 101 58 chr11 117040843 117040912 -4802944 + ID4_ SINE ID 1 72 -11 7 1477 667 133 66 16 chr11 117040959 117041081 -4802775 - B1_Mus1 SINE Alu -1 147 20 7 1477 760 236 74 35 chr11 117041087 117041289 -4802567 + ID_B1 SINE B4 3 212 -12 7 1477 1062 167 58 15 chr11 117041336 117041542 -4802314 - B3 SINE B2 0 216 2 7 1477 575 252 22 30 chr11 117042550 117042685 -4801171 - RSINE1 SINE B4 -22 143 10 8 1477 742 114 0 0 chr11 117043095 117043209 -4800647 + B1_Mus2 SINE Alu 34 147 0 8 1477 303 380 121 28 chr11 117043231 117043586 -4800270 - L1MEe LINE L1 -4358 496 109 8 1477 2373 111 60 5 chr11 117043587 117043967 -4799889 - MTC LTR MaLR 0 421 21 8 1477 667 196 6 6 chr11 117044585 117044749 -4799107 + CT-rich Low_complexity Low_complexity 2 165 0 8 1477 566 224 20 210 chr11 117045237 117045485 -4798371 - B3 SINE B2 -15 201 1 8 1477 767 278 71 46 chr11 117045520 117045803 -4798053 - B4 SINE B4 -2 290 1 8 1477 275 239 204 0 chr11 117045808 117045896 -4797960 - B1F SINE Alu -6 143 38 8 1477 616 188 21 57 chr11 117046169 117046310 -4797546 - B1_Mur1 SINE Alu -3 146 11 8 1477 260 326 11 0 chr11 117046733 117046825 -4797031 - L1ME3A LINE L1 -13 6160 6068 8 184 389 253 0 11 chr11 117047214 117047302 -4796554 - PB1 SINE Alu -12 115 29 9 1478 218 312 12 61 chr11 117047359 117047441 -4796415 - ID2 SINE ID -4 79 2 9 1478 478 232 26 18 chr11 117047493 117047607 -4796249 - PB1D10 SINE Alu -2 115 1 9 1478 930 155 7 7 chr11 117047648 117047797 -4796059 - B1_Mur3 SINE Alu 0 149 1 9 1478 180 111 0 0 chr11 117047833 117047860 -4795996 + (CATA)n Simple_repeat Simple_repeat 4 30 0 9 1478 227 73 0 47 chr11 117047867 117047910 -4795946 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 9 1478 649 105 57 0 chr11 117049000 117049105 -4794751 - PB1D9 SINE Alu 0 120 10 9 1478 309 292 0 22 chr11 117049031 117049122 -4794734 - B4 SINE B4 -124 168 80 9 1478 232 181 35 24 chr11 117049262 117049347 -4794509 + GA-rich Low_complexity Low_complexity 1 86 0 9 1478 365 291 26 45 chr11 117049464 117049619 -4794237 + Lx8 LINE L1 7013 7164 -309 9 1478 244 189 19 0 chr11 117049849 117049902 -4793954 + B4 SINE B4 2 55 -237 1 1478 2019 109 36 69 chr11 117049918 117050252 -4793604 + ORR1A2 LTR MaLR 1 323 -4 1 1478 9856 127 89 6 chr11 117050258 117052053 -4791803 + ORR1A2-int LTR MaLR 21 1963 0 1 1478 301 26 0 0 chr11 117052055 117052093 -4791763 + ORR1A2 LTR MaLR 289 326 0 1 1478 460 311 66 0 chr11 117052093 117052250 -4791606 + B4A SINE B4 63 230 -62 1 1478 510 206 10 0 chr11 117052250 117052352 -4791504 + RSINE1 SINE B4 3 105 -60 1 1478 180 200 0 0 chr11 117052388 117052433 -4791423 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1478 398 217 9 0 chr11 117052575 117052690 -4791166 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 1478 397 196 20 71 chr11 117052715 117052814 -4791042 + PB1D7 SINE Alu 17 110 -10 1 1478 1515 97 0 5 chr11 117053283 117053479 -4790377 - B2_Mm2 SINE B2 0 195 1 1 1478 297 258 13 141 chr11 117054190 117054238 -4789618 + MT2B2 LTR ERVL 126 250 -329 1 1478 390 281 0 0 chr11 117054238 117054334 -4789522 + ID_B1 SINE B4 80 175 -49 1 1478 584 186 0 0 chr11 117054251 117054353 -4789503 + PB1D10 SINE Alu 12 113 -4 1 1478 261 274 48 10 chr11 117054419 117054522 -4789334 + B4A SINE B4 1 107 -185 1 1478 208 153 54 27 chr11 117054532 117054606 -4789250 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1478 316 264 11 0 chr11 117054741 117054828 -4789028 + PB1D9 SINE Alu 33 120 0 1 1478 184 59 0 56 chr11 117054835 117054871 -4788985 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 1 1478 631 190 7 7 chr11 117055057 117055200 -4788656 + CT-rich Low_complexity Low_complexity 2 144 0 1 1478 864 113 59 15 chr11 117055385 117055520 -4788336 - B1_Mus2 SINE Alu -2 145 5 1 1478 284 275 33 11 chr11 117055688 117055780 -4788076 - L1M5 LINE L1 -490 5634 5541 1 1478 230 353 82 13 chr11 117057420 117057578 -4786278 - L1MC1 LINE L1 -204 6129 5961 1 1478 183 80 0 0 chr11 117057724 117057749 -4786107 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 1478 507 33 0 0 chr11 117057834 117057895 -4785961 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1478 288 0 0 0 chr11 117057895 117057926 -4785930 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1478 740 93 0 0 chr11 117058348 117058455 -4785401 - B1_Mur4 SINE Alu -1 149 43 1 1478 269 217 50 85 chr11 117058358 117058499 -4785357 - RLTR25B LTR ERVK -496 532 397 1 1478 222 327 0 0 chr11 117058499 117058603 -4785253 + C-rich Low_complexity Low_complexity 17 120 0 1 1478 852 150 7 26 chr11 117058933 117059084 -4784772 + B1_Mus1 SINE Alu 1 148 0 1 1478 459 0 0 0 chr11 117059369 117059420 -4784436 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1478 354 123 0 0 chr11 117059847 117059904 -4783952 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1478 347 131 86 14 chr11 117060030 117060100 -4783756 - RSINE1 SINE B4 -36 129 55 1 1478 369 203 298 0 chr11 117060148 117060283 -4783573 - B3A SINE B2 -16 182 8 1 1478 610 259 0 0 chr11 117060386 117060521 -4783335 - B1F1 SINE Alu 0 149 15 1 1478 234 0 0 0 chr11 117061628 117061654 -4782202 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1478 324 103 0 0 chr11 117061801 117061859 -4781997 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1478 195 167 0 0 chr11 117064119 117064161 -4779695 + G-rich Low_complexity Low_complexity 1 42 0 1 1478 1167 258 42 62 chr11 117068016 117068401 -4775455 - MTEb LTR MaLR -2 377 1 1 1478 322 298 32 0 chr11 117068755 117068849 -4775007 - B1_Mm SINE Alu -50 97 1 1 1478 226 311 20 82 chr11 117068935 117069033 -4774823 - B4A SINE B4 0 292 201 1 1478 203 61 0 29 chr11 117069066 117069100 -4774756 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1478 821 150 0 21 chr11 117069102 117069245 -4774611 - B1_Mur4 SINE Alu -5 145 6 1 1478 764 242 112 10 chr11 117069259 117069455 -4774401 - B4A SINE B4 -76 216 1 1 1478 633 345 60 16 chr11 117069593 117069908 -4773948 - Arthur1B DNA Tip100 -588 637 309 1 1478 367 373 113 14 chr11 117069974 117070303 -4773553 - LTR33A_ LTR ERVL -156 364 9 1 1478 2008 165 38 11 chr11 117070515 117070883 -4772973 - ORR1C2 LTR MaLR 0 384 7 1 1478 927 145 21 0 chr11 117071084 117071229 -4772627 + B1_Mus1 SINE Alu 1 148 0 1 1478 726 109 0 0 chr11 117071492 117071602 -4772254 + (TCCC)n Simple_repeat Simple_repeat 4 113 0 1 1478 1008 143 14 0 chr11 117071615 117071762 -4772094 + B1_Mur4 SINE Alu 2 150 0 1 1478 1393 90 26 5 chr11 117071764 117071954 -4771902 + B2_Mm2 SINE B2 2 195 0 1 1478 486 226 19 9 chr11 117071972 117072079 -4771777 - PB1D9 SINE Alu -6 114 7 1 1478 281 321 65 9 chr11 117071984 117072091 -4771765 - B4 SINE B4 -101 191 79 1 1478 530 153 0 0 chr11 117072091 117072176 -4771680 - B1F SINE Alu -55 94 10 1 1478 1002 266 59 15 chr11 117073013 117073284 -4770572 + B4 SINE B4 2 284 -8 1 1478 2771 103 50 14 chr11 117073678 117074102 -4769754 - BGLII_B LTR ERVK 0 441 3 1 1478 270 81 0 0 chr11 117074156 117074193 -4769663 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1478 1258 41 0 0 chr11 117074193 117074339 -4769517 - B1_Mus2 SINE Alu 0 147 2 1 1478 297 109 0 0 chr11 117075126 117075181 -4768675 + (T)n Simple_repeat Simple_repeat 1 55 0 1 1478 1236 209 152 27 chr11 117075186 117075405 -4768451 + ORR1D2 LTR MaLR 1 260 -110 1 1478 850 154 13 65 chr11 117075405 117075558 -4768298 - B1_Mur4 SINE Alu -1 149 5 1 1478 1236 209 152 27 chr11 117075558 117075667 -4768189 + ORR1D2 LTR MaLR 261 370 0 1 1478 369 0 0 0 chr11 117075843 117075884 -4767972 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1478 1140 124 0 0 chr11 117075884 117076061 -4767795 + (GA)n Simple_repeat Simple_repeat 1 178 0 1 1478 592 266 42 7 chr11 117076182 117076326 -4767530 + B1F SINE Alu 1 149 0 1 1478 538 217 8 17 chr11 117076329 117076446 -4767410 + PB1D10 SINE Alu 1 116 -1 1 1478 275 227 115 11 chr11 117076604 117076755 -4767101 + RSINE1 SINE B4 89 276 -16 1 1478 465 244 210 6 chr11 117076875 117077056 -4766800 - B4A SINE B4 -69 223 6 1 1478 1237 54 0 0 chr11 117077085 117077232 -4766624 - B1_Mm SINE Alu 0 147 1 1 1478 517 246 0 8 chr11 117077234 117077353 -4766503 - PB1D9 SINE Alu -1 119 2 1 1478 711 241 118 25 chr11 117077359 117077563 -4766293 - B4 SINE B4 -66 226 4 1 1478 943 39 0 0 chr11 117078338 117078467 -4765389 + ORR1A4 LTR MaLR 1 129 -200 1 1478 417 113 0 0 chr11 117078465 117078527 -4765329 + ORR1A4 LTR MaLR 268 329 0 1 1478 801 150 29 0 chr11 117078853 117078993 -4764863 + ORR1A4 LTR MaLR 90 233 -96 1 1478 295 322 17 17 chr11 117078993 117079110 -4764746 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 1 1478 251 164 16 0 chr11 117079168 117079229 -4764627 + (TGGA)n Simple_repeat Simple_repeat 1 62 0 1 1478 266 336 37 9 chr11 117079883 117079991 -4763865 + MIR SINE MIR 34 144 -118 1 1478 376 226 144 46 chr11 117080896 117080978 -4762878 - RLTR20C LTR ERVK 0 578 481 1 1478 465 34 0 0 chr11 117080978 117081037 -4762819 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1478 1299 180 70 72 chr11 117081037 117081405 -4762451 - RLTR20C LTR ERVK -98 480 1 1 1478 1578 11 0 0 chr11 117083036 117083216 -4760640 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1478 246 208 0 0 chr11 117083216 117083269 -4760587 + CT-rich Low_complexity Low_complexity 2 54 0 1 1478 339 214 15 0 chr11 117083269 117083351 -4760505 - ID4 SINE ID -54 98 16 1 1478 387 208 240 8 chr11 117083380 117083501 -4760355 + B1F SINE Alu 1 149 0 1 1478 358 292 60 23 chr11 117083530 117083663 -4760193 + B1_Mur2 SINE Alu 10 147 -2 1 1478 852 131 297 0 chr11 117085143 117085365 -4758491 - MTD LTR MaLR -1 418 131 1 1478 180 0 0 0 chr11 117085587 117085607 -4758249 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 1 1478 393 156 24 83 chr11 117086299 117086383 -4757473 - B3A SINE B2 -48 150 72 1 1478 1017 179 35 0 chr11 117086448 117086649 -4757207 - B3 SINE B2 -7 209 2 1 1478 324 111 0 0 chr11 117086675 117086729 -4757127 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 1 1478 1038 50 0 14 chr11 117086731 117086872 -4756984 - B1_Mus2 SINE Alu 0 147 9 1 1478 493 221 38 114 chr11 117086739 117086897 -4756959 - B4 SINE B4 -72 220 75 1 1478 364 228 0 61 chr11 117086872 117086970 -4756886 - PB1D10 SINE Alu -2 115 24 1 1478 261 146 0 0 chr11 117087427 117087475 -4756381 + (CCCA)n Simple_repeat Simple_repeat 4 51 0 1 1478 590 313 0 0 chr11 117087784 117087931 -4755925 - B1F2 SINE Alu -2 147 1 1 1478 236 311 0 75 chr11 117087870 117087950 -4755906 - B4A SINE B4 -146 146 73 1 1478 654 189 9 4 chr11 117087953 117088183 -4755673 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 1478 1137 238 35 25 chr11 117088217 117088501 -4755355 - B4 SINE B4 0 292 6 1 1478 216 0 0 0 chr11 117090034 117090058 -4753798 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1478 457 179 0 0 chr11 117090152 117090230 -4753626 + ID_B1 SINE B4 78 155 -69 1 1478 1002 147 77 43 chr11 117090256 117090463 -4753393 + B3 SINE B2 1 214 -2 1 1478 406 279 104 75 chr11 117090709 117090988 -4752868 - MLT1D LTR MaLR -25 480 160 1 1478 1162 184 5 24 chr11 117090988 117091200 -4752656 + RMER1C Other Other 989 1196 -146 1 1478 317 246 0 0 chr11 117091236 117091305 -4752551 + RMER1C Other Other 1270 1338 -4 1 1478 336 154 93 28 chr11 117091320 117091427 -4752429 - Lx8 LINE L1 -2 7471 7358 1 1478 198 0 0 0 chr11 117091428 117091450 -4752406 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1478 1064 65 13 19 chr11 117091450 117091607 -4752249 - B2_Mm2 SINE B2 -17 178 23 1 1478 488 238 90 77 chr11 117091624 117091779 -4752077 - Lx8 LINE L1 -214 7259 7103 1 1478 395 208 62 62 chr11 117092382 117092495 -4751361 + PB1D10 SINE Alu 1 113 -4 1 1478 1673 26 0 0 chr11 117092626 117092817 -4751039 - B2_Mm1a SINE B2 -1 192 2 1 1478 22 0 0 0 chr11 117093702 117093724 -4750132 + AT_rich Low_complexity Low_complexity 1 22 0 2 1478 220 211 0 27 chr11 117093879 117093952 -4749904 + GA-rich Low_complexity Low_complexity 2 72 0 2 1478 1121 0 0 8 chr11 117094159 117094289 -4749567 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 2 1478 216 0 0 0 chr11 117094626 117094650 -4749206 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1478 573 258 151 10 chr11 117095749 117095941 -4747915 - ID_B1 SINE B4 0 224 6 2 1478 373 307 17 9 chr11 117096092 117096207 -4747649 - PB1D10 SINE Alu 0 117 2 2 1478 254 311 63 8 chr11 117096364 117096497 -4747359 + MIR SINE MIR 22 166 -102 2 1478 294 29 0 0 chr11 117097097 117097132 -4746724 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1478 271 278 77 31 chr11 117097501 117097631 -4746225 - MLT1C LTR MaLR -77 390 255 2 1478 695 259 19 0 chr11 117097806 117097964 -4745892 - RSINE1 SINE B4 -2 163 3 2 1478 389 253 46 47 chr11 117098082 117098228 -4745628 - B1F1 SINE Alu -4 145 1 2 1478 424 218 11 0 chr11 117098143 117098230 -4745626 - ID_B1 SINE B4 -57 167 80 2 1478 336 277 80 0 chr11 117098230 117098342 -4745514 - L1M3 LINE L1 -819 5321 5201 2 1478 898 265 138 4 chr11 117098477 117098731 -4745125 - B4 SINE B4 0 292 5 2 1478 710 182 155 12 chr11 117099116 117099277 -4744579 + B3 SINE B2 2 185 -31 2 1478 735 12 0 0 chr11 117099277 117099361 -4744495 + (GAA)n Simple_repeat Simple_repeat 2 85 0 2 1478 414 0 0 0 chr11 117099947 117099993 -4743863 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1478 381 22 0 0 chr11 117100064 117100110 -4743746 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1478 616 250 22 0 chr11 117100378 117100514 -4743342 - ID_B1 SINE B4 -3 221 83 2 1478 798 292 63 80 chr11 117100987 117101604 -4742252 - L1M5 LINE L1 -833 5611 5010 2 1478 387 292 61 20 chr11 117101777 117101924 -4741932 + ID_B1 SINE B4 69 221 -3 2 1478 802 223 40 25 chr11 117101930 117102128 -4741728 + B3 SINE B2 2 202 -14 2 1478 428 198 0 78 chr11 117102152 117102266 -4741590 + PB1D9 SINE Alu 10 115 -5 2 1478 496 248 16 0 chr11 117102308 117102429 -4741427 + RSINE1 SINE B4 8 130 -35 2 1478 291 325 138 5 chr11 117102731 117102926 -4740930 - MER21B LTR ERV1 -137 726 506 2 1478 189 196 0 0 chr11 117102980 117103031 -4740825 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1478 536 209 6 0 chr11 117103042 117103219 -4740637 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1478 333 234 0 0 chr11 117103231 117103389 -4740467 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1478 269 238 221 74 chr11 117103389 117103552 -4740304 - B3A SINE B2 -11 187 1 2 1478 584 257 7 0 chr11 117103817 117103945 -4739911 + B1F SINE Alu 9 137 -12 2 1478 1010 241 14 19 chr11 117103945 117104161 -4739695 + B3 SINE B2 2 216 0 2 1478 584 257 7 0 chr11 117104161 117104172 -4739684 + B1F SINE Alu 138 148 -1 2 1478 246 192 13 13 chr11 117104293 117104372 -4739484 + L1MD LINE L1 3099 3177 -2969 2 1478 332 278 20 20 chr11 117104492 117104506 -4739350 + ID_B1 SINE B4 70 168 -56 2 1478 402 212 35 0 chr11 117104506 117104591 -4739265 + B1_Mus2 SINE Alu 1 88 -59 2 1478 232 204 74 0 chr11 117104623 117104677 -4739179 + PB1D10 SINE Alu 24 81 -36 2 1478 709 148 98 0 chr11 117104769 117104891 -4738965 + B1_Mur4 SINE Alu 2 135 -15 2 1478 2251 138 43 0 chr11 117104891 117105260 -4738596 + ORR1B1 LTR MaLR 2 386 -8 2 1478 265 291 69 100 chr11 117105297 117105427 -4738429 + B4A SINE B4 86 211 -81 2 1478 232 306 31 111 chr11 117105427 117105459 -4738397 + B1F2 SINE Alu 1 149 0 2 1478 1219 55 0 0 chr11 117105485 117105631 -4738225 + B1_Mm SINE Alu 2 147 0 2 1478 207 0 0 0 chr11 117105631 117105654 -4738202 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1478 226 167 0 0 chr11 117105654 117105690 -4738166 + RSINE1 SINE B4 12 47 -118 2 1478 1365 67 28 6 chr11 117105773 117105952 -4737904 - B2_Mm2 SINE B2 -11 184 2 2 1478 412 216 302 5 chr11 117106155 117106360 -4737496 - B4A SINE B4 -18 274 9 2 1478 1250 170 199 19 chr11 117107190 117107507 -4736349 - ORR1D1 LTR MaLR 0 374 1 2 1478 372 226 0 0 chr11 117108039 117108132 -4735724 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 1478 228 100 50 0 chr11 117108791 117108831 -4735025 + B1F SINE Alu 24 65 -84 2 1478 351 0 0 0 chr11 117109327 117109366 -4734490 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1478 402 337 75 8 chr11 117109404 117109610 -4734246 - MLT1C LTR MaLR -171 219 8 2 1478 316 343 28 21 chr11 117110460 117110603 -4733253 - MIR SINE MIR -32 230 87 2 1478 285 308 105 9 chr11 117111326 117111431 -4732425 - PB1D7 SINE Alu -5 115 1 2 1478 202 322 0 0 chr11 117111458 117111517 -4732339 + CT-rich Low_complexity Low_complexity 3 61 0 2 1478 1044 207 25 0 chr11 117111520 117111718 -4732138 - ID_B1 SINE B4 -20 204 2 2 1478 474 18 0 0 chr11 117112392 117112447 -4731409 + (CAAG)n Simple_repeat Simple_repeat 2 56 0 2 1478 408 100 159 5 chr11 117113572 117113685 -4730171 - B2_Mm2 SINE B2 -2 193 46 2 1478 1371 84 11 0 chr11 117113695 117113874 -4729982 - B2_Mm1t SINE B2 -12 181 1 2 1478 1017 282 117 0 chr11 117113903 117114219 -4729637 - ORR1E LTR MaLR -6 353 1 2 1478 369 230 0 91 chr11 117114221 117114331 -4729525 - PB1D7 SINE Alu -18 102 3 2 1478 181 200 29 0 chr11 117114472 117114507 -4729349 + MIRm SINE MIR 50 85 -191 2 1478 261 367 27 77 chr11 117115313 117115496 -4728360 - MLT1J2 LTR MaLR -216 232 59 2 1478 408 237 90 33 chr11 117116423 117116518 -4727338 + MTE2a LTR MaLR 1 103 -276 2 1478 447 19 0 0 chr11 117116518 117116570 -4727286 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1478 408 237 90 33 chr11 117116570 117116596 -4727260 + MTE2a LTR MaLR 104 129 -250 2 1478 907 161 0 26 chr11 117116842 117116995 -4726861 - B1_Mur4 SINE Alu -1 149 1 2 1478 1000 243 79 132 chr11 117118044 117118264 -4725592 - MTE2b LTR MaLR -6 373 181 2 1478 656 253 25 0 chr11 117118264 117118422 -4725434 - RSINE1 SINE B4 -1 164 3 2 1478 1000 243 79 132 chr11 117118422 117118502 -4725354 - MTE2b LTR MaLR -199 180 100 2 1478 2501 118 33 28 chr11 117118502 117118893 -4724963 - ORR1B1 LTR MaLR 0 394 2 2 1478 1000 243 79 132 chr11 117118893 117118985 -4724871 - MTE2b LTR MaLR -280 99 1 2 1478 186 194 0 40 chr11 117119387 117119462 -4724394 + CT-rich Low_complexity Low_complexity 2 73 0 2 1478 244 70 47 0 chr11 117119572 117119615 -4724241 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 2 1478 806 235 102 0 chr11 117119615 117119811 -4724045 - ID_B1 SINE B4 -5 219 4 2 1478 216 327 0 0 chr11 117119823 117119878 -4723978 - ID4_ SINE ID 0 83 29 2 1478 207 100 0 0 chr11 117119883 117119913 -4723943 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1478 221 289 62 50 chr11 117119918 117119998 -4723858 - B1F SINE Alu -21 128 48 2 1478 417 222 85 12 chr11 117119972 117120136 -4723720 + RMER17C LTR ERVK 97 272 -138 2 1478 218 329 51 26 chr11 117120144 117120222 -4723634 - PB1D10 SINE Alu -37 80 1 2 1478 191 370 12 0 chr11 117120229 117120310 -4723546 + L3 LINE CR1 4291 4372 -117 2 1478 1540 123 75 135 chr11 117120326 117120673 -4723183 - ORR1A4 LTR MaLR -1 328 3 2 1478 356 219 104 87 chr11 117121690 117121805 -4722051 + PB1D10 SINE Alu 1 117 0 2 1478 220 27 54 0 chr11 117122379 117122416 -4721440 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 1478 1143 71 0 7 chr11 117122420 117122562 -4721294 - B1_Mus2 SINE Alu -6 141 1 2 1478 222 261 128 6 chr11 117122833 117122939 -4720917 - L2b LINE L2 -284 3091 2973 2 1478 742 227 127 21 chr11 117123215 117123404 -4720452 + B3 SINE B2 1 209 -7 2 1478 22 0 0 0 chr11 117123587 117123609 -4720247 + AT_rich Low_complexity Low_complexity 1 22 0 2 1478 430 239 11 0 chr11 117123682 117123774 -4720082 - B3 SINE B2 -105 111 19 2 1478 219 172 21 63 chr11 117124103 117124246 -4719610 + (TA)n Simple_repeat Simple_repeat 1 137 0 2 1478 197 178 0 22 chr11 117124298 117124344 -4719512 + (TATG)n Simple_repeat Simple_repeat 1 45 0 2 1478 222 169 24 61 chr11 117124345 117124427 -4719429 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 1478 273 119 0 0 chr11 117124751 117124793 -4719063 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1478 25 0 0 0 chr11 117127684 117127709 -4716147 + GC_rich Low_complexity Low_complexity 1 25 0 2 1478 24 0 0 0 chr11 117129097 117129121 -4714735 + GC_rich Low_complexity Low_complexity 1 24 0 2 1478 245 51 0 25 chr11 117130700 117130740 -4713116 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1478 225 184 20 0 chr11 117131026 117131075 -4712781 + C-rich Low_complexity Low_complexity 5 54 0 2 1478 954 77 0 0 chr11 117132011 117132141 -4711715 + B1_Mus1 SINE Alu 19 148 0 2 1478 300 228 114 0 chr11 117133920 117133999 -4709857 - PB1D7 SINE Alu -10 110 23 2 1478 1192 198 19 5 chr11 117134521 117134734 -4709122 - B3 SINE B2 0 216 1 2 1478 249 108 0 0 chr11 117134956 117134993 -4708863 + (TGGGGG)n Simple_repeat Simple_repeat 6 42 0 2 1478 225 0 0 0 chr11 117135810 117135835 -4708021 + (CGGA)n Simple_repeat Simple_repeat 2 26 0 2 1478 698 174 0 7 chr11 117136018 117136157 -4707699 + CT-rich Low_complexity Low_complexity 4 141 0 2 1478 208 133 0 0 chr11 117136157 117136187 -4707669 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 1478 180 0 0 0 chr11 117136505 117136525 -4707331 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 2 1478 279 0 0 0 chr11 117137220 117137251 -4706605 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1478 302 247 81 12 chr11 117138097 117138183 -4705673 + L1ME4a LINE L1 5977 6068 -56 2 1478 267 168 50 0 chr11 117138772 117138891 -4704965 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 1478 430 164 42 6 chr11 117138919 117139085 -4704771 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 1478 695 122 29 11 chr11 117139121 117139295 -4704561 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 1478 643 243 88 0 chr11 117140331 117140479 -4703377 - RSINE1 SINE B4 -2 163 3 3 1478 288 130 0 0 chr11 117142285 117142331 -4701525 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 3 1478 542 269 35 15 chr11 117142473 117142642 -4701214 + ID_B1 SINE B4 55 222 -2 3 1478 219 214 107 0 chr11 117142728 117142784 -4701072 - L3b LINE CR1 -198 284 223 3 1478 327 104 0 0 chr11 117143435 117143483 -4700373 + (CCCCCT)n Simple_repeat Simple_repeat 6 53 0 3 1478 537 339 81 41 chr11 117143669 117144038 -4699818 - MLT1C LTR MaLR -67 400 17 3 1478 413 243 117 36 chr11 117144667 117144778 -4699078 + PB1D7 SINE Alu 1 120 0 3 1478 835 269 32 5 chr11 117147065 117147285 -4696571 - B4A SINE B4 -43 249 24 3 1478 241 352 38 46 chr11 117148265 117148396 -4695460 - MLT1D LTR MaLR -107 398 269 3 1478 216 200 31 62 chr11 117149070 117149134 -4694722 + G-rich Low_complexity Low_complexity 1 62 0 3 1478 301 338 37 15 chr11 117149502 117149637 -4694219 + RMER15 LTR ERVL 349 486 -89 3 1478 324 0 0 0 chr11 117149674 117149710 -4694146 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1478 405 0 0 0 chr11 117149710 117149754 -4694102 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1478 250 235 73 0 chr11 117149797 117149865 -4693991 - B4 SINE B4 -73 219 147 3 1478 1251 34 0 7 chr11 117150671 117150819 -4693037 + B1_Mm SINE Alu 1 147 0 3 1478 990 230 5 24 chr11 117150835 117151040 -4692816 - B3 SINE B2 -15 201 1 3 1478 217 303 0 0 chr11 117151412 117151478 -4692378 - ID4_ SINE ID -1 82 17 3 1478 366 252 62 18 chr11 117151495 117151608 -4692248 - B1F1 SINE Alu -5 144 27 3 1478 228 86 0 0 chr11 117152424 117152459 -4691397 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1478 404 267 148 20 chr11 117152865 117153014 -4690842 - MTEa LTR MaLR -14 365 198 3 1478 249 315 39 8 chr11 117153107 117153235 -4690621 - L1MB4 LINE L1 -60 6120 5989 3 1478 234 173 9 0 chr11 117153416 117153466 -4690390 - BC1_Mm scRNA scRNA -30 53 2 3 1478 240 337 31 0 chr11 117153474 117153572 -4690284 - L1MB4 LINE L1 -403 5768 5668 3 1478 718 176 17 12 chr11 117154235 117154664 -4689192 + (TG)n Simple_repeat Simple_repeat 1 431 0 3 1478 318 185 15 0 chr11 117154664 117154729 -4689127 - B4 SINE B4 -1 291 226 3 1478 1154 58 7 0 chr11 117154729 117154884 -4688972 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 3 1478 1122 67 0 0 chr11 117154894 117155043 -4688813 - B2_Mm2 SINE B2 -45 150 2 3 1478 849 195 135 10 chr11 117155065 117155257 -4688599 - B3 SINE B2 0 216 1 3 1478 906 195 100 0 chr11 117155295 117155485 -4688371 - B3 SINE B2 -5 211 3 3 1478 337 229 248 7 chr11 117155496 117155641 -4688215 - B4A SINE B4 -77 215 36 3 1478 205 162 0 0 chr11 117156868 117156905 -4686951 + C-rich Low_complexity Low_complexity 1 37 0 3 1478 273 267 26 13 chr11 117158655 117158731 -4685125 + B4A SINE B4 2 78 -214 3 1478 744 102 9 0 chr11 117158703 117158811 -4685045 + B1_Mur4 SINE Alu 13 121 -29 3 1478 509 251 70 85 chr11 117158874 117159074 -4684782 + B3A SINE B2 2 198 0 3 1478 237 329 35 0 chr11 117159976 117160061 -4683795 + BC1_Mm scRNA scRNA 13 100 -52 3 1478 234 276 0 17 chr11 117160170 117160229 -4683627 - ID4_ SINE ID -1 82 25 3 1478 814 85 17 17 chr11 117160361 117160481 -4683375 - PB1D9 SINE Alu 0 120 1 3 1478 725 194 34 20 chr11 117160497 117160644 -4683212 - B1_Mur1 SINE Alu 0 149 1 3 1478 501 68 0 0 chr11 117160664 117160738 -4683118 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1478 1139 95 47 6 chr11 117160814 117160983 -4682873 - B2_Mm2 SINE B2 -19 176 1 3 1478 347 260 30 30 chr11 117161021 117161120 -4682736 + PB1D10 SINE Alu 5 103 -14 3 1478 414 0 0 0 chr11 117161160 117161206 -4682650 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1478 797 186 38 105 chr11 117161335 117161545 -4682311 - B3A SINE B2 0 198 3 3 1478 254 323 21 21 chr11 117161883 117161978 -4681878 - ORR1D2 LTR MaLR -270 100 6 3 1478 367 264 0 11 chr11 117162000 117162088 -4681768 - B1_Mur4 SINE Alu -52 98 12 3 1478 26 30 0 0 chr11 117162177 117162210 -4681646 + AT_rich Low_complexity Low_complexity 1 33 0 3 1478 999 217 38 14 chr11 117162212 117162422 -4681434 - B3 SINE B2 0 216 2 3 1478 413 286 0 9 chr11 117162466 117162572 -4681284 + B1F1 SINE Alu 32 136 -13 3 1478 573 55 0 0 chr11 117162574 117162647 -4681209 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 1478 224 59 29 0 chr11 117162647 117162681 -4681175 + (GGA)n Simple_repeat Simple_repeat 2 36 0 3 1478 189 139 0 0 chr11 117162971 117163014 -4680842 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1478 223 280 0 96 chr11 117163455 117163538 -4680318 + B1F2 SINE Alu 24 98 -51 3 1478 282 321 143 48 chr11 117163583 117163730 -4680126 + RSINE1 SINE B4 5 165 0 3 1478 738 102 0 0 chr11 117164038 117164156 -4679700 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1478 384 297 17 17 chr11 117164160 117164280 -4679576 - B4A SINE B4 -28 264 145 3 1478 301 247 0 0 chr11 117164291 117164364 -4679492 - B4A SINE B4 -219 73 1 3 1478 440 232 71 0 chr11 117164415 117164527 -4679329 - ID_B1 SINE B4 -1 223 104 3 1478 321 294 32 11 chr11 117164742 117164862 -4678994 - PB1D7 SINE Alu -29 118 1 3 1478 295 338 66 52 chr11 117164885 117165097 -4678759 - MTEb LTR MaLR -7 372 158 3 1478 642 217 42 12 chr11 117165277 117165445 -4678411 - B3 SINE B2 -1 215 43 3 1478 232 264 0 36 chr11 117166180 117166290 -4677566 + (TATATG)n Simple_repeat Simple_repeat 6 111 0 3 1478 1225 196 97 11 chr11 117166302 117166320 -4677536 - B4A SINE B4 -1 291 274 3 1478 198 0 0 0 chr11 117166320 117166342 -4677514 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1478 1225 196 97 11 chr11 117166342 117166591 -4677265 - B4A SINE B4 -19 273 1 3 1478 1356 86 32 0 chr11 117166608 117166795 -4677061 - B2_Mm1t SINE B2 0 193 1 3 1478 871 218 122 0 chr11 117167430 117167627 -4676229 + ID_B1 SINE B4 1 221 -3 3 1478 228 319 64 0 chr11 117167638 117167732 -4676124 + MIR SINE MIR 37 136 -126 3 1478 615 269 0 0 chr11 117168616 117168979 -4674877 + (TG)n Simple_repeat Simple_repeat 1 363 0 3 1478 351 262 170 30 chr11 117168985 117169150 -4674706 - B4A SINE B4 -2 290 103 3 1478 209 315 16 2 chr11 117171622 117171695 -4672161 - MIRc SINE MIR -54 154 82 3 1478 777 234 113 52 chr11 117172058 117172288 -4671568 + B4 SINE B4 41 284 -8 3 1478 876 250 22 27 chr11 117173428 117173650 -4670206 + ID_B1 SINE B4 3 223 -1 3 1478 245 222 0 0 chr11 117174875 117174929 -4668927 - RSINE1 SINE B4 -111 54 1 3 1478 502 198 18 54 chr11 117175230 117175342 -4668514 + PB1D10 SINE Alu 10 117 0 3 1478 269 313 21 50 chr11 117175856 117175997 -4667859 - MIRm SINE MIR -102 174 38 3 1478 432 313 16 222 chr11 117176986 117177013 -4666843 - PB1D7 SINE Alu -21 128 103 3 1478 246 105 0 0 chr11 117177013 117177051 -4666805 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 1478 450 244 3 22 chr11 117177051 117177155 -4666701 - B1F SINE Alu -12 108 2 3 1478 456 228 25 50 chr11 117177175 117177295 -4666561 - PB1D10 SINE Alu 0 117 1 3 1478 313 206 29 0 chr11 117177344 117177412 -4666444 - RSINE1 SINE B4 -29 136 67 3 1478 499 302 0 0 chr11 117177437 117177553 -4666303 - B1F2 SINE Alu -33 116 1 3 1478 326 209 0 56 chr11 117177492 117177563 -4666293 - B4 SINE B4 -146 146 80 3 1478 520 276 22 15 chr11 117177598 117177734 -4666122 - ID_B1 SINE B4 -5 219 83 3 1478 247 292 15 0 chr11 117178165 117178230 -4665626 + (TCCA)n Simple_repeat Simple_repeat 1 66 0 3 1479 189 0 0 0 chr11 117178381 117178402 -4665454 + (CTG)n Simple_repeat Simple_repeat 3 23 0 3 1479 242 319 33 66 chr11 117180577 117180728 -4663128 - MIR SINE MIR -41 221 76 3 1479 351 0 0 0 chr11 117180886 117180925 -4662931 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1479 369 0 0 0 chr11 117180925 117180965 -4662891 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1479 222 273 0 18 chr11 117181569 117181625 -4662231 + B1_Mur1 SINE Alu 80 134 -15 3 1479 195 219 0 0 chr11 117181784 117181825 -4662031 - MIR SINE MIR -87 121 81 3 1479 580 282 116 42 chr11 117182244 117182433 -4661423 - B3 SINE B2 -5 211 9 3 1479 234 0 0 0 chr11 117182468 117182494 -4661362 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 1479 500 204 26 34 chr11 117182567 117182684 -4661172 - RSINE1 SINE B4 -41 124 9 3 1479 343 127 16 0 chr11 117182846 117182909 -4660947 - B1_Mur2 SINE Alu 0 149 86 3 1479 261 184 89 38 chr11 117182909 117182925 -4660931 - ID_B1 SINE B4 0 224 142 3 1479 690 238 160 31 chr11 117185123 117185379 -4658477 - B4A SINE B4 -1 291 3 3 1479 342 0 0 0 chr11 117185966 117186004 -4657852 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1479 1258 27 0 7 chr11 117186280 117186427 -4657429 + B1_Mus1 SINE Alu 2 147 -1 3 1479 532 173 124 9 chr11 117186837 117186942 -4656914 - PB1D10 SINE Alu 0 117 1 3 1479 204 40 0 0 chr11 117188086 117188111 -4655745 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 3 1479 420 71 0 0 chr11 117188425 117188481 -4655375 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1479 381 313 53 53 chr11 117188919 117189125 -4654731 - MLT1C LTR MaLR -3 464 259 3 1479 751 252 87 19 chr11 117189416 117189622 -4654234 - ID_B1 SINE B4 -3 221 2 3 1479 253 296 49 0 chr11 117189661 117189742 -4654114 + PB1D10 SINE Alu 1 85 -32 3 1479 1352 77 28 6 chr11 117189913 117190095 -4653761 - B2_Mm2 SINE B2 -8 187 2 3 1479 738 226 107 10 chr11 117190646 117190843 -4653013 - ID_B1 SINE B4 0 224 9 4 1479 197 86 57 0 chr11 117190853 117190888 -4652968 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 4 1479 1162 169 29 5 chr11 117190900 117191108 -4652748 + B3 SINE B2 4 216 0 4 1479 891 105 0 22 chr11 117191133 117191269 -4652587 + B1_Mur4 SINE Alu 1 133 -17 4 1479 230 185 198 0 chr11 117191250 117191331 -4652525 - B1F SINE Alu -3 146 50 4 1479 460 276 112 22 chr11 117191387 117191565 -4652291 - B3A SINE B2 -4 194 1 4 1479 428 375 58 40 chr11 117191717 117191992 -4651864 + MER33 DNA MER1_type 22 301 -23 4 1479 302 261 14 0 chr11 117195079 117195148 -4648708 - PB1D7 SINE Alu -37 83 14 4 1479 318 265 23 100 chr11 117196731 117196861 -4646995 + MT2B LTR ERVL 138 257 -344 4 1479 761 115 9 0 chr11 117196779 117196892 -4646964 + B1_Mur4 SINE Alu 24 137 -13 4 1479 198 71 0 0 chr11 117196892 117196920 -4646936 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1479 286 322 114 41 chr11 117196923 117197046 -4646810 + RSINE1 SINE B4 34 165 0 4 1479 228 309 71 36 chr11 117197390 117197401 -4646455 - BC1_Mm scRNA scRNA -65 87 1 4 1479 286 296 0 27 chr11 117197401 117197474 -4646382 - ID SINE ID -153 71 1 4 1479 370 253 0 12 chr11 117197476 117197560 -4646296 - PB1D10 SINE Alu 0 117 35 4 1479 183 290 0 46 chr11 117197647 117197712 -4646144 + L2 LINE L2 2221 2282 -1137 4 1479 1209 98 0 0 chr11 117198102 117198276 -4645580 + (TC)n Simple_repeat Simple_repeat 2 175 0 4 1479 225 0 0 0 chr11 117198276 117198300 -4645556 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1479 480 252 173 0 chr11 117198411 117198538 -4645318 + RSINE1 SINE B4 5 153 -12 4 1479 745 161 41 62 chr11 117198567 117198713 -4645143 + B1_Mur2 SINE Alu 2 144 -5 4 1479 953 108 0 108 chr11 117198733 117198899 -4644957 + B1_Mus1 SINE Alu 1 148 0 4 1479 275 280 26 39 chr11 117198907 117198985 -4644871 + B4A SINE B4 216 292 0 4 1479 333 0 0 0 chr11 117199506 117199543 -4644313 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1479 818 230 99 38 chr11 117199567 117199829 -4644027 - B4A SINE B4 -14 278 1 4 1479 450 267 0 0 chr11 117200757 117200847 -4643009 + PB1D10 SINE Alu 18 107 -10 4 1479 234 0 0 0 chr11 117204040 117204066 -4639790 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1479 1234 47 0 0 chr11 117204066 117204214 -4639642 - B1_Mus1 SINE Alu 0 148 1 4 1479 703 211 0 16 chr11 117205003 117205186 -4638670 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 4 1479 338 91 18 0 chr11 117207497 117207552 -4636304 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1479 487 282 198 22 chr11 117207569 117207801 -4636055 - B4A SINE B4 -19 273 1 4 1479 228 361 21 0 chr11 117209302 117209399 -4634457 - L1MB5 LINE L1 -72 6102 6004 4 1479 342 0 0 0 chr11 117209602 117209640 -4634216 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1479 417 70 0 0 chr11 117209640 117209696 -4634160 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1479 239 259 0 0 chr11 117209703 117209761 -4634095 - RSINE1 SINE B4 -24 141 84 4 1479 417 229 30 30 chr11 117210280 117210379 -4633477 + PB1D10 SINE Alu 2 100 -17 4 1479 314 208 51 25 chr11 117212958 117213037 -4630819 - B1_Mur3 SINE Alu -67 82 2 4 1479 799 250 55 5 chr11 117217136 117217337 -4626519 + ID_B1 SINE B4 7 217 -7 4 1479 792 193 224 17 chr11 117217349 117217528 -4626328 + B3 SINE B2 1 216 0 4 1479 301 185 99 0 chr11 117218499 117218580 -4625276 - PB1D10 SINE Alu -28 89 1 4 1479 813 208 25 113 chr11 117218724 117218963 -4624893 - URR1A DNA MER1_type -8 218 1 4 1479 447 311 54 80 chr11 117218968 117219192 -4624664 + ID_B1 SINE B4 5 222 -2 4 1479 607 307 7 0 chr11 117220140 117220280 -4623576 - RSINE1 SINE B4 -13 152 12 4 1479 1129 219 85 17 chr11 117220336 117220629 -4623227 - MTEa LTR MaLR -49 330 18 4 1479 207 0 0 0 chr11 117223536 117223559 -4620297 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1479 419 204 40 10 chr11 117223785 117223884 -4619972 + B3A SINE B2 94 195 -3 4 1479 308 240 0 26 chr11 117224232 117224309 -4619547 - MLT1C LTR MaLR -338 129 55 4 1479 482 91 13 0 chr11 117225485 117225562 -4618294 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1479 551 301 37 0 chr11 117225610 117225773 -4618083 - B4A SINE B4 -118 174 6 4 1479 525 218 150 0 chr11 117225790 117225923 -4617933 - B3 SINE B2 -4 212 60 4 1479 1717 26 0 0 chr11 117225974 117226167 -4617689 - B2_Mm1a SINE B2 0 193 1 4 1479 217 308 33 0 chr11 117227241 117227332 -4616524 + PB1D10 SINE Alu 24 117 0 4 1479 42 20 0 0 chr11 117227464 117227513 -4616343 + AT_rich Low_complexity Low_complexity 1 49 0 4 1479 229 208 0 25 chr11 117227513 117227592 -4616264 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1479 239 140 0 20 chr11 117227594 117227645 -4616211 + (CATG)n Simple_repeat Simple_repeat 3 52 0 4 1479 360 278 11 0 chr11 117227713 117227803 -4616053 - B4A SINE B4 -76 216 126 4 1479 519 208 18 9 chr11 117227870 117228001 -4615855 + ORR1E LTR MaLR 1 132 -242 4 1479 232 244 47 102 chr11 117228036 117228164 -4615692 + ORR1E LTR MaLR 253 373 -6 4 1479 828 248 208 59 chr11 117228279 117228601 -4615255 + MTEa LTR MaLR 1 370 -9 4 1479 278 346 35 49 chr11 117228867 117229010 -4614846 - MTEa LTR MaLR -15 364 224 4 1479 206 259 0 33 chr11 117229524 117229584 -4614272 + CT-rich Low_complexity Low_complexity 5 62 0 4 1479 303 225 135 0 chr11 117230206 117230317 -4613539 + MTE2a LTR MaLR 1 126 -233 4 1479 608 174 17 9 chr11 117230440 117230556 -4613300 - B1_Mur4 SINE Alu -27 123 7 4 1479 250 309 61 70 chr11 117230457 117230572 -4613284 - B4A SINE B4 -98 194 81 4 1479 306 267 27 0 chr11 117230575 117230650 -4613206 + MTE2a LTR MaLR 299 375 -4 4 1479 1882 186 38 16 chr11 117230890 117231055 -4612801 + ORR1D1 LTR MaLR 1 172 -202 4 1479 765 51 0 0 chr11 117231055 117231153 -4612703 + (TCCC)n Simple_repeat Simple_repeat 1 98 0 4 1479 1882 186 38 16 chr11 117231153 117231353 -4612503 + ORR1D1 LTR MaLR 173 374 0 4 1479 220 240 0 48 chr11 117232613 117232718 -4611138 + (CCCCAG)n Simple_repeat Simple_repeat 4 103 0 4 1479 2763 141 36 48 chr11 117232794 117233403 -4610453 - RMER17A LTR ERVK 0 751 150 4 1479 515 341 25 82 chr11 117233492 117233735 -4610121 - MLT2B4 LTR ERVL -324 232 4 4 1479 250 225 88 0 chr11 117233848 117233928 -4609928 + PB1D10 SINE Alu 1 87 -30 4 1479 1026 215 60 145 chr11 117233928 117234126 -4609730 + RLTR40 LTR ERVK 1 170 -647 4 1479 1192 50 0 0 chr11 117234126 117234266 -4609590 + B1_Mm SINE Alu 1 140 -7 4 1479 1026 215 60 145 chr11 117234266 117234278 -4609578 + RLTR40 LTR ERVK 171 171 -646 4 1479 225 0 0 0 chr11 117234278 117234303 -4609553 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1479 1026 215 60 145 chr11 117234303 117234426 -4609430 + RLTR40 LTR ERVK 171 288 -529 4 1479 402 85 0 0 chr11 117234426 117234485 -4609371 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1479 1026 215 60 145 chr11 117234485 117234535 -4609321 + RLTR40 LTR ERVK 289 353 -464 4 1479 726 44 0 0 chr11 117234946 117235036 -4608820 + (TCC)n Simple_repeat Simple_repeat 3 92 0 4 1479 315 267 58 0 chr11 117236459 117236545 -4607311 - PB1D10 SINE Alu -22 95 5 4 1479 1415 138 0 5 chr11 117237124 117237343 -4606513 + URR1A DNA MER1_type 6 223 -3 4 1479 558 41 0 0 chr11 117237433 117237506 -4606350 + (CA)n Simple_repeat Simple_repeat 1 73 0 4 1479 1008 56 0 20 chr11 117237508 117237654 -4606202 + B1_Mus1 SINE Alu 6 148 0 4 1479 276 344 34 77 chr11 117237512 117237720 -4606136 + B4A SINE B4 94 292 0 4 1479 390 196 0 0 chr11 117237727 117237819 -4606037 + (CA)n Simple_repeat Simple_repeat 2 93 0 4 1479 285 100 0 0 chr11 117238282 117238332 -4605524 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1479 552 315 68 0 chr11 117238460 117238606 -4605250 + RSINE1 SINE B4 4 159 -6 4 1479 490 267 0 77 chr11 117238684 117238784 -4605072 + PB1D9 SINE Alu 1 93 -27 4 1479 267 54 0 0 chr11 117238784 117238821 -4605035 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1479 1402 88 0 11 chr11 117238821 117239004 -4604852 - B2_Mm2 SINE B2 -13 182 2 4 1479 490 267 0 77 chr11 117239004 117239032 -4604824 + PB1D9 SINE Alu 94 119 -1 4 1479 1223 292 49 42 chr11 117239089 117239475 -4604381 + Lx8 LINE L1 6205 6593 -880 4 1479 1010 155 23 32 chr11 117239475 117239695 -4604161 - ORR1C2 LTR MaLR 0 384 167 4 1479 1188 49 18 0 chr11 117239703 117239867 -4603989 + (TAGA)n Simple_repeat Simple_repeat 1 167 0 4 1479 768 229 122 41 chr11 117240829 117241025 -4602831 - B3 SINE B2 -4 212 1 4 1479 515 229 0 0 chr11 117241331 117241427 -4602429 - PB1D10 SINE Alu -13 104 9 4 1479 241 325 50 0 chr11 117241356 117241436 -4602420 - B4A SINE B4 -125 167 84 4 1479 522 114 0 0 chr11 117241447 117241526 -4602330 + (CCTG)n Simple_repeat Simple_repeat 4 82 0 4 1479 559 297 1 25 chr11 117241526 117241689 -4602167 - ID_B1 SINE B4 -9 215 70 4 1479 555 298 57 19 chr11 117241689 117241901 -4601955 - ID_B1 SINE B4 -3 221 2 4 1479 220 314 8 153 chr11 117241901 117241934 -4601922 - B4A SINE B4 -223 69 41 4 1479 1056 167 58 10 chr11 117242344 117242550 -4601306 - B3 SINE B2 0 216 1 4 1479 1550 42 5 20 chr11 117242622 117242817 -4601039 - B2_Mm1t SINE B2 0 193 2 4 1479 1434 75 11 0 chr11 117242819 117243005 -4600851 - B2_Mm1t SINE B2 -4 189 2 4 1479 287 0 53 0 chr11 117243016 117243054 -4600802 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 1479 909 176 0 0 chr11 117243054 117243190 -4600666 - B1_Mur2 SINE Alu -13 136 1 4 1479 324 0 0 0 chr11 117243216 117243252 -4600604 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1479 246 279 138 11 chr11 117243255 117243342 -4600514 - RSINE1 SINE B4 -22 143 46 4 1479 461 276 207 0 chr11 117243472 117243617 -4600239 - B4A SINE B4 -109 183 9 5 1479 960 111 0 0 chr11 117244594 117244774 -4599082 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1479 201 159 0 0 chr11 117244775 117244819 -4599037 + GA-rich Low_complexity Low_complexity 2 45 0 5 1479 192 200 0 0 chr11 117244821 117244866 -4598990 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1479 360 268 186 8 chr11 117245037 117245161 -4598695 + B4A SINE B4 87 232 -60 5 1479 731 270 26 31 chr11 117245161 117245352 -4598504 + B3 SINE B2 27 216 0 5 1479 264 254 0 0 chr11 117245349 117245408 -4598448 + B4A SINE B4 216 274 -18 5 1479 771 42 0 0 chr11 117245455 117245550 -4598306 + (GA)n Simple_repeat Simple_repeat 2 96 0 5 1479 359 92 15 0 chr11 117245551 117245616 -4598240 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1479 216 0 0 0 chr11 117246973 117246997 -4596859 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1479 182 284 36 36 chr11 117247034 117247118 -4596738 + L4 LINE RTE 778 861 -1168 5 1479 291 299 41 10 chr11 117247612 117247710 -4596146 + PB1D10 SINE Alu 17 117 0 5 1479 1629 232 57 25 chr11 117247880 117248277 -4595579 + RLTR16 LTR ERVK 3 411 -94 5 1479 360 0 0 0 chr11 117248277 117248317 -4595539 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1479 1629 232 57 25 chr11 117248317 117248393 -4595463 + RLTR16 LTR ERVK 412 490 -15 5 1479 242 164 48 121 chr11 117248451 117248534 -4595322 + RLTR16 LTR ERVK 429 505 0 5 1479 278 316 56 59 chr11 117249256 117249542 -4594314 + RLTR21 LTR ERVK 1056 1340 -232 5 1479 297 0 0 0 chr11 117250126 117250159 -4593697 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1479 261 0 0 0 chr11 117250159 117250187 -4593669 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1479 242 265 11 89 chr11 117250563 117250832 -4593024 - RMER17A LTR ERVK -300 451 204 5 1479 900 254 72 113 chr11 117250783 117251129 -4592727 + MTE2a LTR MaLR 9 340 -39 5 1479 451 153 39 8 chr11 117251158 117251264 -4592592 + B3 SINE B2 5 111 -87 5 1479 3418 163 49 13 chr11 117251296 117251925 -4591931 + RMER1A Other Other 375 1026 -4 5 1479 516 246 79 121 chr11 117252035 117252225 -4591631 - B3A SINE B2 -16 182 1 5 1479 580 262 66 33 chr11 117253413 117253626 -4590230 + ID_B1 SINE B4 1 220 -4 5 1479 821 154 0 7 chr11 117253487 117253631 -4590225 + B1_Mus1 SINE Alu 6 148 0 5 1479 1016 166 92 15 chr11 117253635 117253831 -4590025 + B3 SINE B2 2 212 -4 5 1479 392 192 93 75 chr11 117253903 117254010 -4589846 - B1F SINE Alu -4 145 37 5 1479 231 164 0 0 chr11 117254122 117254183 -4589673 + T-rich Low_complexity Low_complexity 1 61 0 5 1479 1138 95 0 0 chr11 117254183 117254331 -4589525 - B1_Mus1 SINE Alu 0 148 1 5 1479 259 323 22 29 chr11 117254332 117254372 -4589484 - L1M4 LINE L1 -807 5339 5303 5 1479 479 248 99 57 chr11 117254372 117254513 -4589343 - B1F SINE Alu -2 147 1 5 1479 259 323 22 29 chr11 117254513 117254609 -4589247 - L1M4 LINE L1 -844 5302 5204 5 1479 930 119 184 7 chr11 117254816 117254968 -4588888 - B2_Mm2 SINE B2 -16 179 1 5 1479 291 85 0 0 chr11 117254982 117255029 -4588827 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1479 186 298 53 0 chr11 117255259 117255316 -4588540 - MIRm SINE MIR -97 179 120 5 1479 197 211 0 17 chr11 117255543 117255601 -4588255 + G-rich Low_complexity Low_complexity 2 58 0 5 1479 205 143 0 0 chr11 117256902 117256937 -4586919 - L2a LINE L2 -262 3164 3130 5 1479 423 186 0 0 chr11 117257153 117257255 -4586601 + (TG)n Simple_repeat Simple_repeat 1 102 0 5 1479 524 276 0 89 chr11 117257259 117257438 -4586418 - RSINE1 SINE B4 0 165 3 5 1479 417 263 129 35 chr11 117257448 117257649 -4586207 - L1MB3 LINE L1 -1 6182 5963 5 1479 319 282 134 22 chr11 117257823 117257957 -4585899 - ID_B1 SINE B4 -74 150 2 5 1479 288 261 96 55 chr11 117258203 117258349 -4585507 - MER68 LTR ERVL -336 227 76 5 1479 396 0 0 0 chr11 117258627 117258671 -4585185 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1479 320 265 47 38 chr11 117258900 117259006 -4584850 - MIRb SINE MIR -74 194 88 5 1479 321 274 15 45 chr11 117259342 117259476 -4584380 + GA-rich Low_complexity Low_complexity 3 132 0 5 1479 330 300 0 43 chr11 117260343 117260458 -4583398 - L1M3 LINE L1 -524 5644 5535 5 1479 672 268 78 23 chr11 117260463 117260719 -4583137 + Lx8 LINE L1 5637 5906 -1567 5 1479 207 359 0 11 chr11 117260765 117260858 -4582998 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1479 209 208 0 14 chr11 117260884 117260957 -4582899 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1479 464 356 0 0 chr11 117261013 117261193 -4582663 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1479 287 333 43 43 chr11 117262604 117262623 -4581233 + B1_Mur4 SINE Alu 9 149 -1 5 1479 556 254 0 0 chr11 117262623 117262745 -4581111 + ID_B1 SINE B4 102 223 -1 5 1479 708 111 0 0 chr11 117262751 117262859 -4580997 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 5 1479 522 272 158 12 chr11 117262864 117263028 -4580828 + B3 SINE B2 5 192 -6 5 1479 1039 143 21 42 chr11 117263028 117263218 -4580638 - B2_Mm2 SINE B2 -9 186 1 5 1479 281 288 58 116 chr11 117263218 117263242 -4580614 + B2_Mm2 SINE B2 169 182 -13 5 1479 279 0 0 0 chr11 117263242 117263273 -4580583 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1479 1250 208 74 4 chr11 117263631 117263931 -4579925 - ORR1D2 LTR MaLR -3 367 61 5 1479 221 229 62 0 chr11 117264469 117264517 -4579339 + ID SINE ID 32 82 -142 5 1479 651 194 45 77 chr11 117264559 117264793 -4579063 - RMER2 LTR ERV1 -236 331 4 5 1479 483 306 56 0 chr11 117264793 117264929 -4578927 + MTE2b LTR MaLR 39 182 -197 5 1479 1265 87 40 6 chr11 117264929 117265103 -4578753 + B2_Mm2 SINE B2 2 181 -14 5 1479 626 25 0 0 chr11 117265114 117265194 -4578662 - B1_Mus2 SINE Alu 0 147 68 5 1479 658 211 105 33 chr11 117265192 117265373 -4578483 + MTE2b LTR MaLR 170 363 -16 5 1479 180 111 0 0 chr11 117265442 117265469 -4578387 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1479 519 259 21 14 chr11 117266299 117266440 -4577416 - B1F SINE Alu -3 146 5 5 1479 582 136 136 0 chr11 117266692 117266773 -4577083 + RLTR41 LTR ERV1 1 83 -363 5 1479 426 20 0 0 chr11 117266773 117266824 -4577032 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1479 582 136 136 0 chr11 117266824 117266852 -4577004 + RLTR41 LTR ERV1 84 123 -323 5 1479 953 176 92 10 chr11 117266850 117267045 -4576811 + RLTR41 LTR ERV1 236 446 0 5 1479 387 0 0 0 chr11 117267217 117267260 -4576596 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1479 293 225 7 130 chr11 117267293 117267325 -4576531 + L1MB5 LINE L1 6031 6051 -123 5 1479 300 241 38 12 chr11 117267325 117267405 -4576451 + ID4 SINE ID 2 83 0 5 1479 293 225 7 130 chr11 117267405 117267510 -4576346 + L1MB5 LINE L1 6052 6151 -23 5 1479 306 290 32 0 chr11 117267524 117267617 -4576239 - PB1D9 SINE Alu -1 119 24 5 1479 953 225 19 28 chr11 117270802 117271017 -4572839 - B3 SINE B2 -3 213 1 5 1479 1238 94 15 55 chr11 117271989 117272030 -4571826 - B2_Mm2 SINE B2 -1 194 162 5 1479 189 0 0 0 chr11 117272030 117272051 -4571805 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 1479 1238 94 15 55 chr11 117272051 117272211 -4571645 - B2_Mm2 SINE B2 -34 161 1 5 1479 2116 160 26 10 chr11 117272259 117272644 -4571212 - RLTR31B_Mm LTR ERVK 0 557 167 5 1479 688 140 52 9 chr11 117272644 117272759 -4571097 + PB1D9 SINE Alu 1 120 0 5 1479 2000 161 15 200 chr11 117272759 117272878 -4570978 - RLTR31B_Mm LTR ERVK -369 215 156 5 1479 1291 21 0 0 chr11 117272878 117273023 -4570833 + B1_Mm SINE Alu 1 145 -2 5 1479 216 0 0 0 chr11 117273023 117273047 -4570809 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1479 2000 161 15 200 chr11 117273047 117273201 -4570655 - RLTR31B_Mm LTR ERVK -429 155 47 5 1479 417 289 23 0 chr11 117273246 117273374 -4570482 + ID_B1 SINE B4 94 224 0 5 1479 2327 118 104 0 chr11 117273454 117273828 -4570028 - MTC LTR MaLR -8 413 1 5 1479 914 147 469 14 chr11 117273867 117274227 -4569629 - RMER19A LTR ERVK -212 525 1 5 1479 1422 237 40 45 chr11 117274642 117275018 -4568838 - MTEa LTR MaLR -5 374 1 5 1479 256 298 39 19 chr11 117275182 117275336 -4568520 + (CAGAGA)n Simple_repeat Simple_repeat 6 162 0 5 1479 915 240 135 22 chr11 117275409 117275728 -4568128 + ORR1D1 LTR MaLR 1 355 -19 5 1479 386 273 77 28 chr11 117275951 117276094 -4567762 + RMER30 DNA MER1_type 1 150 -52 5 1479 1233 35 0 0 chr11 117277854 117277995 -4565861 - B1_Mus2 SINE Alu -6 141 1 5 1479 754 272 39 2 chr11 117278013 117278258 -4565598 - B4A SINE B4 -12 280 12 5 1479 630 143 0 0 chr11 117278279 117278384 -4565472 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 1479 852 226 21 16 chr11 117278410 117278599 -4565257 - B3 SINE B2 -24 192 3 5 1479 250 297 58 7 chr11 117279477 117279616 -4564240 + RMER17D2 LTR ERVK 230 375 -434 5 1479 433 264 9 28 chr11 117279780 117279889 -4563967 + B1F2 SINE Alu 37 143 -6 5 1479 330 26 0 0 chr11 117280539 117280578 -4563278 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1479 477 160 40 0 chr11 117281671 117281775 -4562081 + B1F1 SINE Alu 1 120 0 5 1479 295 300 12 12 chr11 117281845 117281926 -4561930 - ID4 SINE ID -2 81 1 5 1479 728 173 251 0 chr11 117282481 117282660 -4561196 + URR1B DNA MER1_type 2 225 0 5 1479 254 263 79 20 chr11 117282943 117283044 -4560812 + MIRb SINE MIR 37 143 -125 5 1479 551 303 20 53 chr11 117284099 117284316 -4559540 + B3A SINE B2 1 191 -2 5 1479 1161 76 7 0 chr11 117284593 117284738 -4559118 - B1_Mus1 SINE Alu -2 146 1 5 1479 754 281 187 9 chr11 117284965 117285302 -4558554 + MTD LTR MaLR 13 409 -10 5 1479 1210 75 0 0 chr11 117285619 117285766 -4558090 + B1_Mus2 SINE Alu 1 147 0 5 1479 1617 128 178 42 chr11 117286183 117286312 -4557544 + RMER17C LTR ERVK 2 189 -221 5 1479 981 79 20 7 chr11 117286312 117286465 -4557391 + (TCTCC)n Simple_repeat Simple_repeat 2 156 0 5 1479 1617 128 178 42 chr11 117286465 117286694 -4557162 + RMER17C LTR ERVK 190 408 -2 5 1479 210 205 24 12 chr11 117286705 117286789 -4557067 + (CCCA)n Simple_repeat Simple_repeat 3 87 0 5 1479 609 139 0 0 chr11 117286774 117286882 -4556974 + (TCCC)n Simple_repeat Simple_repeat 4 111 0 5 1479 283 344 75 31 chr11 117286904 117287132 -4556724 - L2a LINE L2 -41 3385 3148 6 1479 565 240 62 57 chr11 117287705 117287899 -4555957 - B3 SINE B2 -6 210 16 6 1479 261 0 0 0 chr11 117287904 117287933 -4555923 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 1479 309 340 95 7 chr11 117287972 117288245 -4555611 - L2a LINE L2 -635 2784 2488 6 1479 1063 68 0 0 chr11 117288251 117288384 -4555472 + B1_Mus1 SINE Alu 1 133 -15 6 1479 1575 157 203 0 chr11 117288531 117288836 -4555020 - ORR1B2 LTR MaLR 0 367 1 6 1479 623 240 29 81 chr11 117292572 117292781 -4551075 - B3A SINE B2 0 198 1 6 1479 287 339 78 5 chr11 117292787 117292980 -4550876 - L1M3 LINE L1 -562 5618 5412 6 1479 471 314 87 0 chr11 117293068 117293240 -4550616 - B4A SINE B4 -1 291 105 6 1479 778 171 56 14 chr11 117293423 117293565 -4550291 - B1_Mus1 SINE Alu 0 148 1 6 1479 263 332 39 43 chr11 117293565 117293820 -4550036 - L1MD LINE L1 -3118 3028 2775 6 1479 865 306 28 103 chr11 117293820 117293833 -4550023 - MTE2a LTR MaLR -3 376 364 6 1479 2600 50 0 47 chr11 117293833 117294171 -4549685 + RLTRETN_Mm LTR ERVK 1 322 0 6 1479 865 306 28 103 chr11 117294171 117294554 -4549302 - MTE2a LTR MaLR -16 363 11 6 1479 234 233 198 0 chr11 117294559 117294645 -4549211 - L1MD LINE L1 -3367 2779 2677 6 1479 809 238 10 49 chr11 117294647 117294850 -4549006 + B3A SINE B2 3 197 -1 6 1479 1241 48 0 0 chr11 117294880 117295027 -4548829 + B1_Mm SINE Alu 1 147 0 6 1479 291 54 0 0 chr11 117295104 117295141 -4548715 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1479 415 132 105 0 chr11 117295312 117295388 -4548468 + PB1D9 SINE Alu 31 114 -6 6 1479 207 194 0 0 chr11 117295393 117295429 -4548427 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 6 1479 862 220 39 0 chr11 117295445 117295627 -4548229 + B3 SINE B2 1 189 -27 6 1479 203 349 88 36 chr11 117295704 117295841 -4548015 + L2b LINE L2 3225 3368 -7 6 1479 3151 70 2 15 chr11 117296093 117296497 -4547359 + MTB LTR MaLR 1 399 -1 6 1479 563 254 177 25 chr11 117297167 117297363 -4546493 + B4 SINE B4 1 226 -66 6 1479 483 237 157 87 chr11 117297363 117297548 -4546308 + B3A SINE B2 1 198 0 6 1479 310 234 16 0 chr11 117297545 117297609 -4546247 + B4 SINE B4 215 279 -13 6 1479 354 263 84 63 chr11 117298745 117298887 -4544969 + MLT1A1 LTR MaLR 263 407 -1 6 1479 341 43 21 0 chr11 117299058 117299105 -4544751 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1479 430 284 120 19 chr11 117299105 117299263 -4544593 - B3A SINE B2 -24 174 1 6 1479 273 177 32 0 chr11 117299544 117299606 -4544250 - ID4 SINE ID -10 73 10 6 1479 21 0 0 0 chr11 117300191 117300212 -4543644 + AT_rich Low_complexity Low_complexity 1 21 0 6 1479 585 325 0 19 chr11 117300601 117300761 -4543095 + RSINE1 SINE B4 9 165 0 6 1479 513 190 0 18 chr11 117300762 117301042 -4542814 + (CA)n Simple_repeat Simple_repeat 1 274 0 6 1479 300 275 0 55 chr11 117303036 117303163 -4540693 + GA-rich Low_complexity Low_complexity 6 125 0 6 1479 2749 113 5 69 chr11 117303203 117303638 -4540218 + MTB_Mm LTR MaLR 1 407 0 6 1479 1407 53 0 0 chr11 117303750 117304072 -4539784 + (CA)n Simple_repeat Simple_repeat 1 322 0 6 1479 433 237 60 17 chr11 117304117 117304233 -4539623 - B4 SINE B4 -51 241 121 6 1479 405 0 0 0 chr11 117304520 117304565 -4539291 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1479 239 263 0 0 chr11 117304566 117304623 -4539233 - B4A SINE B4 -18 274 218 6 1479 278 215 0 12 chr11 117304647 117304727 -4539129 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 1479 230 271 21 105 chr11 117304729 117304824 -4539032 - RSINE1 SINE B4 0 165 79 6 1479 303 287 145 47 chr11 117304815 117304987 -4538869 - B4 SINE B4 -63 229 41 6 1479 604 220 0 0 chr11 117305003 117305121 -4538735 - B4A SINE B4 -58 234 117 6 1479 189 107 0 0 chr11 117305701 117305729 -4538127 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 6 1479 633 236 111 0 chr11 117305732 117305876 -4537980 - RSINE1 SINE B4 -4 161 2 6 1479 22 0 0 0 chr11 117306474 117306496 -4537360 + AT_rich Low_complexity Low_complexity 1 22 0 6 1479 284 233 110 0 chr11 117306506 117306579 -4537277 + ID2 SINE ID 2 82 -1 6 1479 416 231 50 43 chr11 117306615 117306755 -4537101 + B1F SINE Alu 1 141 -8 6 1479 351 226 7 15 chr11 117306992 117307127 -4536729 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 1479 767 197 4 18 chr11 117307415 117307697 -4536159 + CT-rich Low_complexity Low_complexity 1 277 0 6 1479 372 167 0 46 chr11 117308259 117308352 -4535504 - B1_Mur2 SINE Alu -20 129 20 6 1479 376 270 121 115 chr11 117308675 117308875 -4534981 - MLT1C LTR MaLR -44 423 211 6 1479 783 105 0 0 chr11 117308875 117309008 -4534848 + (TCTCTG)n Simple_repeat Simple_repeat 2 134 0 6 1479 376 270 121 115 chr11 117309008 117309054 -4534802 - MLT1C LTR MaLR -257 210 185 6 1479 1013 272 31 17 chr11 117309054 117309342 -4534514 - B4A SINE B4 0 292 1 6 1479 376 270 121 115 chr11 117309342 117309408 -4534448 - MLT1C LTR MaLR -283 184 108 6 184 1560 186 137 14 chr11 117309425 117309790 -4534066 + MTD LTR MaLR 1 410 -9 6 1480 389 195 25 25 chr11 117309790 117309869 -4533987 + ID4 SINE ID 4 82 -1 6 1480 871 84 13 84 chr11 117310018 117310173 -4533683 + B1_Mur4 SINE Alu 6 149 -1 6 1480 618 291 0 0 chr11 117310192 117310340 -4533516 + RSINE1 SINE B4 3 150 -15 6 1480 21 0 0 0 chr11 117310353 117310374 -4533482 + AT_rich Low_complexity Low_complexity 1 21 0 6 1480 251 258 0 29 chr11 117310415 117310483 -4533373 + ORR1E LTR MaLR 56 121 -238 6 1480 292 229 0 0 chr11 117310483 117310553 -4533303 + CT-rich Low_complexity Low_complexity 1 70 0 6 1480 351 0 0 0 chr11 117310553 117310592 -4533264 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1480 255 312 61 37 chr11 117310636 117310684 -4533172 - B4 SINE B4 -125 167 115 6 1480 387 0 0 0 chr11 117310684 117310727 -4533129 + (TATAA)n Simple_repeat Simple_repeat 2 44 0 6 1480 255 312 61 37 chr11 117310727 117310841 -4533015 - B4 SINE B4 -178 114 1 6 1480 426 39 0 0 chr11 117310943 117310995 -4532861 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1480 240 274 98 38 chr11 117311390 117311523 -4532333 - L1MEc LINE L1 -5561 839 699 6 1480 748 271 220 0 chr11 117311674 117311947 -4531909 - MTD LTR MaLR -52 367 35 6 1480 819 304 97 80 chr11 117312200 117312665 -4531191 + MLT2B1 LTR ERVL 13 485 -35 6 1480 305 296 11 0 chr11 117312854 117313030 -4530826 + CT-rich Low_complexity Low_complexity 1 178 0 6 1480 351 288 0 0 chr11 117313081 117313258 -4530598 + CT-rich Low_complexity Low_complexity 1 177 0 6 1480 396 284 0 0 chr11 117313314 117313673 -4530183 + CT-rich Low_complexity Low_complexity 1 359 0 6 1480 512 272 72 6 chr11 117314279 117314460 -4529396 - HAL1-2a_MD LINE L1 -487 2537 2345 6 1480 209 250 0 0 chr11 117314468 117314520 -4529336 + (TGG)n Simple_repeat Simple_repeat 2 53 0 6 1480 261 222 0 0 chr11 117314546 117314609 -4529247 + (ATGGTG)n Simple_repeat Simple_repeat 6 68 0 6 1480 253 264 63 42 chr11 117316574 117316669 -4527187 + ID_B1 SINE B4 3 99 -125 6 1480 442 281 135 18 chr11 117316757 117316909 -4526947 + B4A SINE B4 60 230 -62 6 1480 437 301 83 0 chr11 117316909 117317042 -4526814 + RSINE1 SINE B4 3 146 -19 6 1480 414 260 109 8 chr11 117317155 117317283 -4526573 + B1_Mur4 SINE Alu 9 149 -1 6 1480 262 222 0 0 chr11 117318016 117318070 -4525786 - MER5A DNA MER1_type 0 189 136 6 1480 747 191 0 0 chr11 117319235 117319462 -4524394 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 6 1480 816 191 0 0 chr11 117319483 117319661 -4524195 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 6 1480 759 237 25 0 chr11 117319688 117320013 -4523843 + (TCCA)n Simple_repeat Simple_repeat 1 333 0 6 1480 221 217 22 0 chr11 117320380 117320426 -4523430 - MIRc SINE MIR -107 161 115 6 1480 23 0 0 0 chr11 117321941 117321964 -4521892 + AT_rich Low_complexity Low_complexity 1 23 0 6 1480 1051 112 6 6 chr11 117322308 117322479 -4521377 + (TTC)n Simple_repeat Simple_repeat 3 173 0 6 1480 288 250 0 0 chr11 117322482 117322578 -4521278 + CT-rich Low_complexity Low_complexity 2 97 0 6 1480 282 216 0 0 chr11 117322577 117322651 -4521205 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1480 279 246 0 0 chr11 117322664 117322725 -4521131 - B4A SINE B4 -16 276 216 6 1480 659 143 17 0 chr11 117322726 117322845 -4521011 + CT-rich Low_complexity Low_complexity 2 122 0 6 1480 21 0 0 0 chr11 117322845 117322866 -4520990 + AT_rich Low_complexity Low_complexity 1 21 0 6 1480 748 85 0 9 chr11 117322870 117322977 -4520879 - B2_Mm2 SINE B2 -88 107 2 6 1480 764 246 79 23 chr11 117322979 117323195 -4520661 - B4A SINE B4 -64 228 1 6 1480 235 288 15 0 chr11 117323567 117323633 -4520223 + CT-rich Low_complexity Low_complexity 4 70 0 6 1480 300 169 56 0 chr11 117324068 117324157 -4519699 + CT-rich Low_complexity Low_complexity 5 98 0 6 1480 384 162 0 0 chr11 117324976 117325081 -4518775 + GA-rich Low_complexity Low_complexity 76 180 0 6 1480 713 168 0 0 chr11 117325081 117325194 -4518662 + (CAGAGA)n Simple_repeat Simple_repeat 5 117 0 6 1480 201 252 0 0 chr11 117325400 117325447 -4518409 + MIRm SINE MIR 107 159 -117 6 1480 244 161 49 12 chr11 117325494 117325576 -4518280 + GA-rich Low_complexity Low_complexity 4 88 0 6 1480 481 216 23 23 chr11 117325601 117325776 -4518080 + GA-rich Low_complexity Low_complexity 6 180 0 6 1480 441 0 0 0 chr11 117325903 117325952 -4517904 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1480 776 307 64 21 chr11 117326316 117326596 -4517260 - B4A SINE B4 0 292 1 6 1480 256 350 14 21 chr11 117327124 117327264 -4516592 + (TATG)n Simple_repeat Simple_repeat 4 142 0 6 1480 203 61 30 0 chr11 117327963 117327996 -4515860 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1480 406 262 238 0 chr11 117328013 117328135 -4515721 - RSINE1 SINE B4 -14 151 1 6 1480 318 293 0 29 chr11 117328648 117328750 -4515106 + B4A SINE B4 2 100 -192 6 1480 229 257 214 0 chr11 117328755 117328825 -4515031 + B4A SINE B4 205 289 -3 6 1480 362 254 40 32 chr11 117329013 117329029 -4514827 - MLT1B LTR MaLR -2 372 360 6 1480 2351 85 31 3 chr11 117329029 117329347 -4514509 + ORR1A2 LTR MaLR 1 327 0 6 1480 389 203 93 19 chr11 117329347 117329456 -4514400 - MLT1B LTR MaLR -17 373 248 6 1480 416 242 247 48 chr11 117329717 117329883 -4513973 - ID_B1 SINE B4 -9 215 17 6 1480 353 257 110 39 chr11 117330383 117330537 -4513319 - MER117 DNA MER1_type -30 167 3 6 1480 267 114 0 0 chr11 117330540 117330584 -4513272 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1480 429 36 0 0 chr11 117330766 117330821 -4513035 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1480 218 161 33 82 chr11 117331066 117331127 -4512729 + L2a LINE L2 3338 3395 -31 7 1480 1142 145 86 68 chr11 117331538 117331760 -4512096 - URR1A DNA MER1_type 0 226 1 7 1480 2462 91 73 120 chr11 117331780 117332231 -4511625 - RLTR23 LTR ERV1 0 430 1 7 1480 567 228 12 123 chr11 117332246 117332416 -4511440 + RSINE1 SINE B4 7 157 -8 7 1480 253 265 215 22 chr11 117332596 117332731 -4511125 + MIR SINE MIR 30 190 -72 7 1480 934 126 241 0 chr11 117332814 117332988 -4510868 + B3 SINE B2 1 216 0 7 1480 820 242 112 15 chr11 117333872 117334132 -4509724 + B4 SINE B4 1 285 -7 7 1480 1013 240 21 21 chr11 117335078 117335316 -4508540 - ORR1D2 LTR MaLR -132 238 1 7 1480 697 89 2 0 chr11 117335317 117335424 -4508432 - B2_Mm2 SINE B2 -105 111 3 7 1480 2042 197 23 139 chr11 117335424 117336036 -4507820 + RMER19C LTR ERVK 71 611 0 7 1480 861 0 28 0 chr11 117336212 117336321 -4507535 + (CA)n Simple_repeat Simple_repeat 1 112 0 7 1480 349 246 287 0 chr11 117336649 117336816 -4507040 + B3 SINE B2 2 216 0 7 1480 424 206 6 31 chr11 117337843 117338003 -4505853 + C-rich Low_complexity Low_complexity 1 156 0 7 1480 322 304 92 69 chr11 117338095 117338268 -4505588 - MLT1A LTR MaLR -197 177 1 7 1480 4151 132 105 60 chr11 117338622 117339459 -4504397 - RMER19B LTR ERVK -27 875 1 7 1480 255 146 0 0 chr11 117341504 117341559 -4502297 + (C)n Simple_repeat Simple_repeat 1 55 0 7 1480 612 190 19 90 chr11 117341863 117342019 -4501837 + ID_B1 SINE B4 57 201 -23 7 1480 382 274 36 36 chr11 117341907 117342047 -4501809 + B1F2 SINE Alu 10 149 0 7 1480 472 385 0 0 chr11 117342564 117342743 -4501113 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1480 889 260 106 0 chr11 117342793 117343039 -4500817 - B4 SINE B4 -1 291 20 7 1480 272 329 0 0 chr11 117343107 117343183 -4500673 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1480 417 248 156 23 chr11 117343248 117343376 -4500480 + RSINE1 SINE B4 21 165 0 7 1480 952 223 61 20 chr11 117343413 117343610 -4500246 + B3 SINE B2 4 208 -8 7 1480 23 33 0 0 chr11 117343619 117343649 -4500207 + AT_rich Low_complexity Low_complexity 1 30 0 7 1480 199 152 0 98 chr11 117344454 117344556 -4499300 + GA-rich Low_complexity Low_complexity 2 93 0 7 1480 453 292 41 18 chr11 117345221 117345392 -4498464 + GA-rich Low_complexity Low_complexity 1 175 0 7 1480 495 0 0 0 chr11 117345404 117345459 -4498397 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 7 1480 984 255 26 140 chr11 117346041 117346469 -4497387 - MTE2a LTR MaLR 0 379 1 7 1480 184 371 55 24 chr11 117346725 117346852 -4497004 + MIRb SINE MIR 34 164 -104 7 1480 296 351 90 34 chr11 117346855 117347088 -4496768 + MER21B LTR ERV1 1 246 -617 7 1480 298 291 8 3 chr11 117347125 117347225 -4496631 - L1M4 LINE L1 -867 5273 5172 7 1480 333 0 0 0 chr11 117348011 117348048 -4495808 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1480 829 196 178 11 chr11 117348279 117348470 -4495386 - ID_B1 SINE B4 0 224 2 7 1480 562 222 8 0 chr11 117348760 117348877 -4494979 - B3A SINE B2 -80 118 1 7 1480 671 297 130 82 chr11 117349009 117349486 -4494370 + MT2A LTR ERVL 13 512 -21 7 1480 658 205 25 56 chr11 117350024 117350184 -4493672 + RMER15 LTR ERVL 5 159 -416 7 1480 472 254 9 9 chr11 117350194 117350309 -4493547 + RMER15 LTR ERVL 306 420 -155 7 1480 973 191 21 118 chr11 117351153 117351333 -4492523 - B3 SINE B2 0 216 41 7 1480 1036 118 11 17 chr11 117351333 117351514 -4492342 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1480 1150 70 0 21 chr11 117351521 117351666 -4492190 - B1_Mus2 SINE Alu -5 142 1 7 1480 973 191 21 118 chr11 117351666 117351715 -4492141 - B3 SINE B2 -176 40 2 7 1480 388 260 17 176 chr11 117351771 117352004 -4491852 + B3A SINE B2 1 196 -2 7 1480 1636 26 16 5 chr11 117352454 117352646 -4491210 + B2_Mm2 SINE B2 1 194 -1 7 1480 207 344 33 40 chr11 117352664 117352850 -4491006 + G-rich Low_complexity Low_complexity 1 184 0 7 1480 426 341 23 0 chr11 117352871 117353044 -4490812 + G-rich Low_complexity Low_complexity 4 180 0 7 1480 270 0 0 0 chr11 117353854 117353884 -4489972 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1480 2005 147 83 10 chr11 117354451 117354836 -4489020 + MTC LTR MaLR 1 413 -8 7 1480 945 156 0 0 chr11 117355362 117355529 -4488327 + (TCCA)n Simple_repeat Simple_repeat 4 170 0 7 1480 278 200 0 0 chr11 117355543 117355598 -4488258 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 7 1480 896 173 6 0 chr11 117355600 117355779 -4488077 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 7 1480 349 290 51 0 chr11 117357436 117357574 -4486282 + B1_Mur4 SINE Alu 3 147 -3 7 1480 686 187 13 26 chr11 117357453 117357607 -4486249 + B4 SINE B4 106 257 -35 7 1480 429 20 0 0 chr11 117357633 117357683 -4486173 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1480 640 62 31 0 chr11 117357687 117357784 -4486072 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 7 1480 198 182 78 0 chr11 117358830 117358907 -4484949 + CT-rich Low_complexity Low_complexity 2 84 0 7 1480 228 242 20 20 chr11 117358957 117359058 -4484798 + C-rich Low_complexity Low_complexity 4 104 0 7 1480 874 158 122 10 chr11 117360002 117360206 -4483650 - ORR1D1 LTR MaLR 0 374 148 7 1480 285 266 12 81 chr11 117360261 117360316 -4483540 + ORR1D1 LTR MaLR 95 146 -228 7 1480 2638 77 3 0 chr11 117360316 117360642 -4483214 + ORR1A2 LTR MaLR 1 327 0 7 1480 285 266 12 81 chr11 117360642 117360672 -4483184 + ORR1D1 LTR MaLR 147 174 -200 7 1480 323 287 0 65 chr11 117360882 117360975 -4482881 + RSINE1 SINE B4 2 88 -77 7 1480 474 129 0 0 chr11 117361030 117361115 -4482741 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1480 2996 24 0 3 chr11 117361121 117361459 -4482397 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1480 21810 35 18 22 chr11 117361459 117364213 -4479643 + IAPEz-int LTR ERVK 8 2751 -3730 7 1480 7006 16 0 0 chr11 117364205 117365021 -4478835 + IAPEz-int LTR ERVK 3244 4059 -2422 7 1480 7749 24 3 0 chr11 117365014 117365930 -4477926 + IAPEz-int LTR ERVK 5563 6481 0 7 1480 2996 24 0 3 chr11 117365930 117366268 -4477588 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1480 809 155 0 5 chr11 117366271 117366493 -4477363 + (CA)n Simple_repeat Simple_repeat 1 221 0 7 1480 310 206 44 0 chr11 117366498 117366566 -4477290 + HAL1-3A_ME LINE L1 1980 2050 -808 7 1480 345 333 107 0 chr11 117367217 117367367 -4476489 + L1MB5 LINE L1 6008 6173 -1 7 1480 1253 41 7 0 chr11 117367529 117367676 -4476180 - B1_Mus1 SINE Alu 0 148 1 7 1480 905 264 0 0 chr11 117368087 117368288 -4475568 + ORR1E LTR MaLR 13 213 -146 7 1480 453 272 14 81 chr11 117368703 117368851 -4475005 + ORR1E LTR MaLR 240 377 -2 7 1480 24 32 0 0 chr11 117369774 117369805 -4474051 + AT_rich Low_complexity Low_complexity 1 31 0 7 1480 1063 189 65 0 chr11 117369813 117370014 -4473842 + B3 SINE B2 3 216 0 7 1480 413 238 101 26 chr11 117370072 117370194 -4473662 + PB1D9 SINE Alu 9 146 -3 7 1480 270 0 0 0 chr11 117370263 117370293 -4473563 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 7 1480 518 305 0 0 chr11 117370431 117370572 -4473284 + MER58A DNA MER1_type 32 172 -52 7 1480 240 213 0 5 chr11 117370637 117370693 -4473163 - MIR3 SINE MIR -106 170 111 7 1480 254 319 0 21 chr11 117370719 117370815 -4473041 + CT-rich Low_complexity Low_complexity 1 94 0 7 1480 396 228 123 66 chr11 117371210 117371332 -4472524 + B1_Mur1 SINE Alu 6 134 -15 7 1480 561 30 0 0 chr11 117371337 117371404 -4472452 + (TGGGGG)n Simple_repeat Simple_repeat 5 71 0 7 1480 902 187 134 0 chr11 117371410 117371597 -4472259 + B3 SINE B2 5 216 0 7 1480 1207 105 99 0 chr11 117371609 117371781 -4472075 - B2_Mm2 SINE B2 -5 190 2 7 1480 287 155 23 23 chr11 117372007 117372093 -4471763 + CT-rich Low_complexity Low_complexity 1 86 0 7 1480 230 294 0 0 chr11 117372386 117372454 -4471402 + (TGGA)n Simple_repeat Simple_repeat 4 71 0 7 1480 297 282 0 0 chr11 117372472 117372596 -4471260 + (TGGA)n Simple_repeat Simple_repeat 3 126 0 7 1480 191 314 0 14 chr11 117372628 117372767 -4471089 + (TGGA)n Simple_repeat Simple_repeat 3 139 0 7 1480 330 360 5 43 chr11 117372768 117372912 -4470944 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 7 1480 243 0 0 0 chr11 117372912 117372939 -4470917 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 7 1480 330 360 5 43 chr11 117372939 117372980 -4470876 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 7 1480 525 16 0 0 chr11 117373321 117373383 -4470473 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1480 255 283 41 0 chr11 117373630 117373703 -4470153 - B1F SINE Alu -62 87 12 7 1480 628 208 141 42 chr11 117374116 117374307 -4469549 + B4A SINE B4 24 233 -59 7 1480 231 302 0 0 chr11 117374367 117374430 -4469426 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1480 371 267 0 22 chr11 117374568 117374752 -4469104 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1480 303 236 0 77 chr11 117374757 117374835 -4469021 + ID_B1 SINE B4 142 213 -11 7 1480 678 245 14 7 chr11 117374844 117374992 -4468864 + MT2A LTR ERVL 1 149 -384 7 1480 553 236 188 21 chr11 117375036 117375176 -4468680 + MT2A LTR ERVL 385 544 -57 7 1480 198 0 0 0 chr11 117375176 117375198 -4468658 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1480 553 236 188 21 chr11 117375198 117375243 -4468613 + MT2A LTR ERVL 545 601 0 7 1480 365 291 76 108 chr11 117375252 117375502 -4468354 + ORR1E LTR MaLR 56 297 -62 7 1480 258 267 144 29 chr11 117375526 117375630 -4468226 - MLT2B1 LTR ERVL -81 486 371 7 1480 330 206 14 14 chr11 117375648 117375717 -4468139 + MTD LTR MaLR 1 69 -352 7 1480 1366 177 92 13 chr11 117375803 117376106 -4467750 + MTD LTR MaLR 81 407 -12 7 1480 239 263 61 31 chr11 117377776 117377874 -4465982 - B4 SINE B4 -16 276 176 7 1480 192 40 0 0 chr11 117377875 117377900 -4465956 + (CAGC)n Simple_repeat Simple_repeat 4 28 0 7 1480 421 322 18 50 chr11 117378927 117379184 -4464672 + MTEb LTR MaLR 133 377 -2 7 1480 473 214 0 0 chr11 117379365 117379454 -4464402 + PB1D7 SINE Alu 16 104 -16 7 1480 453 122 0 0 chr11 117379474 117379548 -4464308 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 1480 210 286 54 62 chr11 117379583 117379695 -4464161 - B1F2 SINE Alu -16 133 23 7 1480 343 275 138 38 chr11 117379603 117379762 -4464094 - B4A SINE B4 -86 206 32 7 1480 392 299 110 50 chr11 117379857 117380139 -4463717 + L1ME2 LINE L1 5535 5833 -331 7 1480 732 200 7 27 chr11 117380752 117380901 -4462955 - B1_Mus1 SINE Alu -1 147 2 7 1480 2156 169 39 3 chr11 117381366 117381727 -4462129 - ORR1D1 LTR MaLR 0 374 1 7 1480 288 243 14 0 chr11 117381739 117381809 -4462047 + ID SINE ID 2 72 -152 8 1480 1005 270 133 6 chr11 117381813 117381886 -4461970 + MTD LTR MaLR 5 79 -340 8 1480 2381 113 36 14 chr11 117381886 117382245 -4461611 + ORR1B2 LTR MaLR 1 367 0 8 1480 1005 270 133 6 chr11 117382245 117382525 -4461331 + MTD LTR MaLR 80 403 -16 8 1480 453 240 18 85 chr11 117382539 117382703 -4461153 + ID_B1 SINE B4 69 221 -3 8 1480 3096 44 41 15 chr11 117382705 117383095 -4460761 + MTB LTR MaLR 1 400 0 8 1480 229 276 64 37 chr11 117383099 117383208 -4460648 + Tigger7 DNA MER2_type 2250 2361 -130 8 1480 342 115 0 0 chr11 117383960 117384021 -4459835 + (CAGAGA)n Simple_repeat Simple_repeat 1 61 0 8 1480 203 253 105 13 chr11 117384303 117384379 -4459477 - L2b LINE L2 -37 3338 3256 8 1480 899 274 52 0 chr11 117385724 117385936 -4457920 + ID_B1 SINE B4 1 223 -1 8 1480 234 0 0 0 chr11 117386336 117386362 -4457494 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1480 1260 48 0 0 chr11 117386405 117386552 -4457304 + B1_Mus1 SINE Alu 2 148 0 8 1480 201 200 0 48 chr11 117386905 117386947 -4456909 + polypyrimidine Low_complexity Low_complexity 4 43 0 8 1480 198 138 52 0 chr11 117387181 117387239 -4456617 + (CCCA)n Simple_repeat Simple_repeat 1 61 0 8 1480 1535 225 119 13 chr11 117387905 117388284 -4455572 - MTD LTR MaLR 0 419 1 8 1480 201 74 0 0 chr11 117388686 117388713 -4455143 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 8 1480 1069 243 11 52 chr11 117388737 117388914 -4454942 - B4 SINE B4 -8 284 109 8 1480 2662 22 28 0 chr11 117388914 117389232 -4454624 - IAPLTR2b LTR ERVK 0 327 1 8 1480 1069 243 11 52 chr11 117389232 117389341 -4454515 - B4 SINE B4 -184 108 10 8 1480 365 172 101 61 chr11 117390161 117390260 -4453596 - B1F2 SINE Alu -3 146 44 8 1480 227 192 0 71 chr11 117391047 117391103 -4452753 + ID_B1 SINE B4 105 156 -68 8 1480 782 267 19 0 chr11 117391105 117391315 -4452541 + B3 SINE B2 3 216 0 8 1480 365 219 24 12 chr11 117391333 117391416 -4452440 + ID_B1 SINE B4 141 224 0 8 1480 210 292 0 0 chr11 117391936 117391984 -4451872 + polypurine Low_complexity Low_complexity 4 51 0 8 1480 189 0 0 0 chr11 117391986 117392007 -4451849 + (GGGGA)n Simple_repeat Simple_repeat 1 21 0 8 1480 689 285 141 62 chr11 117392049 117392419 -4451437 + MER63D DNA AcHobo 25 423 -638 8 1480 1135 55 7 0 chr11 117392574 117392720 -4451136 - B1_Mus2 SINE Alu 0 147 1 8 1480 252 0 0 0 chr11 117392859 117392887 -4450969 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 8 1480 333 107 0 18 chr11 117393161 117393218 -4450638 - HAL1-3A_ME LINE L1 -828 2030 1975 8 1480 354 216 26 18 chr11 117393218 117393331 -4450525 + (TG)n Simple_repeat Simple_repeat 1 114 0 8 1480 1602 26 5 0 chr11 117395146 117395338 -4448518 + B2_Mm1a SINE B2 1 193 0 8 1480 238 196 0 0 chr11 117395784 117395830 -4448026 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 8 1480 435 83 0 0 chr11 117395951 117396011 -4447845 + (TCCCC)n Simple_repeat Simple_repeat 2 61 0 8 1480 616 269 158 0 chr11 117397626 117397797 -4446059 + ID_B1 SINE B4 27 224 0 8 1480 448 189 11 64 chr11 117397825 117398012 -4445844 + G-rich Low_complexity Low_complexity 1 177 0 8 1480 261 0 0 0 chr11 117399051 117399080 -4444776 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1480 539 193 126 0 chr11 117399189 117399308 -4444548 + ID_B1 SINE B4 89 222 -2 8 1480 532 222 0 53 chr11 117399489 117399622 -4444234 + RSINE1 SINE B4 2 127 -38 8 1480 225 0 0 0 chr11 117399654 117399679 -4444177 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1480 21 0 0 0 chr11 117399934 117399955 -4443901 + AT_rich Low_complexity Low_complexity 1 21 0 8 1480 558 288 8 0 chr11 117400569 117400701 -4443155 - B3 SINE B2 0 216 84 8 1480 395 165 128 55 chr11 117400729 117400838 -4443018 - ID_B1 SINE B4 0 224 108 8 1480 240 252 0 133 chr11 117400838 117400857 -4442999 - PB1D7 SINE Alu 0 120 10 8 1480 1156 68 0 0 chr11 117400926 117401073 -4442783 + B1_Mm SINE Alu 1 147 0 8 1480 204 67 0 0 chr11 117401073 117401103 -4442753 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1480 589 203 65 0 chr11 117401354 117401477 -4442379 + RSINE1 SINE B4 3 133 -32 8 1480 285 51 0 0 chr11 117401496 117401535 -4442321 + (CATA)n Simple_repeat Simple_repeat 4 42 0 8 1480 291 28 0 0 chr11 117401999 117402035 -4441821 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1480 342 107 0 0 chr11 117402035 117402090 -4441766 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1480 624 226 143 24 chr11 117403133 117403342 -4440514 + B4A SINE B4 5 238 -54 8 1480 1097 29 0 14 chr11 117403358 117403500 -4440356 + B1_Mm SINE Alu 8 147 0 8 1480 681 261 0 64 chr11 117403620 117403658 -4440198 + B3A SINE B2 3 37 -161 8 1480 822 115 223 0 chr11 117403658 117403815 -4440041 - B2_Mm1a SINE B2 -1 192 1 8 1480 681 264 4 67 chr11 117403815 117404001 -4439855 + B3A SINE B2 38 214 -2 8 1480 667 207 7 7 chr11 117404009 117404307 -4439549 + (CATATA)n Simple_repeat Simple_repeat 1 298 0 8 1480 25 51 0 0 chr11 117404928 117404967 -4438889 + AT_rich Low_complexity Low_complexity 1 39 0 8 1480 735 238 70 27 chr11 117405050 117405236 -4438620 - B3 SINE B2 -14 202 9 8 1480 798 126 22 22 chr11 117406185 117406363 -4437493 + GA-rich Low_complexity Low_complexity 2 179 0 8 1480 919 244 14 0 chr11 117406664 117406877 -4436979 + B3 SINE B2 1 216 0 8 1480 395 266 115 0 chr11 117406908 117406980 -4436876 + ID SINE ID 1 85 -139 8 1480 227 196 22 0 chr11 117406980 117407026 -4436830 + B1F2 SINE Alu 4 50 -99 8 1480 345 47 0 0 chr11 117407026 117407069 -4436787 + (GGA)n Simple_repeat Simple_repeat 1 43 0 8 1480 256 347 86 9 chr11 117407211 117407501 -4436355 + MLT1D LTR MaLR 29 372 -133 8 1480 263 256 27 30 chr11 117408175 117408255 -4435601 + B4 SINE B4 2 79 -213 8 1480 252 0 0 0 chr11 117408676 117408704 -4435152 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 8 1480 856 142 8 0 chr11 117408704 117408838 -4435018 - B1_Mur3 SINE Alu -14 135 1 8 1480 314 243 0 75 chr11 117408839 117408919 -4434937 - L1MDa LINE L1 -4122 2511 2438 8 1480 303 28 0 0 chr11 117409064 117409100 -4434756 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1480 611 133 0 9 chr11 117409309 117409415 -4434441 + (GAAA)n Simple_repeat Simple_repeat 1 105 0 8 1480 273 263 0 38 chr11 117409618 117409697 -4434159 + (ATGGTG)n Simple_repeat Simple_repeat 4 79 0 8 1480 425 258 110 25 chr11 117409698 117409861 -4433995 - HAL1-2a_MD LINE L1 -508 2516 2340 8 1480 409 187 0 14 chr11 117410773 117410860 -4432996 + ORR1D1 LTR MaLR 57 141 -237 8 1480 558 90 223 9 chr11 117410858 117410970 -4432886 - B2_Mm2 SINE B2 -3 192 57 8 1480 270 0 0 0 chr11 117411267 117411297 -4432559 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1480 3164 55 0 2 chr11 117411404 117411805 -4432051 - MTB LTR MaLR 0 400 1 8 1480 257 310 69 10 chr11 117414349 117414450 -4429406 + MIRc SINE MIR 37 143 -125 8 1480 779 239 83 5 chr11 117414736 117414929 -4428927 + B3 SINE B2 9 216 0 8 1480 1081 129 37 11 chr11 117414969 117415157 -4428699 - B2_Mm2 SINE B2 -1 194 2 8 1480 1506 33 0 16 chr11 117415185 117415372 -4428484 + B2_Mm1a SINE B2 2 185 -8 8 1480 207 139 0 0 chr11 117416080 117416116 -4427740 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1480 202 299 0 0 chr11 117416150 117416217 -4427639 + G-rich Low_complexity Low_complexity 1 67 0 8 1480 234 0 0 0 chr11 117416273 117416299 -4427557 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1480 261 0 0 0 chr11 117416731 117416760 -4427096 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1480 306 0 0 0 chr11 117416760 117416793 -4427063 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 1480 244 164 15 15 chr11 117416861 117416929 -4426927 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1480 255 269 0 0 chr11 117417602 117417721 -4426135 + (CA)n Simple_repeat Simple_repeat 1 119 0 8 1480 267 31 0 0 chr11 117417781 117417813 -4426043 + (CCA)n Simple_repeat Simple_repeat 1 32 0 8 1480 450 0 0 0 chr11 117417847 117417897 -4425959 + (TTG)n Simple_repeat Simple_repeat 2 51 0 8 1480 261 200 314 0 chr11 117417989 117418059 -4425797 + PB1D10 SINE Alu 18 109 -8 8 1480 243 0 0 0 chr11 117419818 117419845 -4424011 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1480 2161 72 106 0 chr11 117419845 117420137 -4423719 + ORR1A2 LTR MaLR 5 327 0 8 1480 2605 162 35 18 chr11 117420185 117420695 -4423161 - RLTR11A2 LTR ERVK 0 527 9 8 1480 270 227 0 0 chr11 117420891 117420957 -4422899 + GA-rich Low_complexity Low_complexity 1 66 0 8 1480 180 0 0 0 chr11 117421826 117421846 -4422010 + (TGG)n Simple_repeat Simple_repeat 1 20 0 8 1480 1540 154 207 162 chr11 117421881 117422250 -4421606 - RMER4B LTR ERVK 0 585 143 8 1480 959 45 106 0 chr11 117422250 117422382 -4421474 + B1_Mus1 SINE Alu 2 147 -1 8 1480 1540 154 207 162 chr11 117422382 117422572 -4421284 - RMER4B LTR ERVK -443 142 1 8 1480 1679 156 10 4 chr11 117422572 117422865 -4420991 - MurERV4-int LTR ERVK 0 5260 4991 8 1480 453 103 0 0 chr11 117422866 117422934 -4420922 - MurERV4-int LTR ERVK -254 5006 4939 8 1480 7780 156 21 40 chr11 117422938 117423956 -4419900 - MurERV4-int LTR ERVK -3525 1735 740 8 1480 1048 116 0 0 chr11 117423956 117424103 -4419753 - B1_Mus1 SINE Alu 0 148 2 8 1480 7780 173 34 29 chr11 117424103 117424710 -4419146 - MurERV4-int LTR ERVK -4521 739 1 8 1480 3243 142 26 26 chr11 117424710 117425295 -4418561 - RMER4B LTR ERVK 0 585 1 8 1480 656 191 200 104 chr11 117425477 117425717 -4418139 + RLTR20D LTR ERVK 1 263 -305 8 1480 560 265 54 13 chr11 117425724 117425776 -4418080 + RLTR20D LTR ERVK 414 464 -104 8 1480 432 0 0 0 chr11 117425776 117425824 -4418032 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1480 560 265 54 13 chr11 117425824 117425920 -4417936 + RLTR20D LTR ERVK 465 567 -1 8 1480 433 295 64 120 chr11 117426199 117426557 -4417299 + ORR1E LTR MaLR 7 344 -15 8 1480 233 266 31 0 chr11 117426625 117426689 -4417167 + LTR37B LTR ERV1 376 441 -27 8 1480 181 180 20 20 chr11 117426689 117426740 -4417116 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 8 1480 225 324 0 14 chr11 117426763 117426835 -4417021 - B4A SINE B4 -19 273 203 8 1480 1103 58 0 0 chr11 117426835 117426974 -4416882 + B1_Mus2 SINE Alu 1 139 -8 8 1480 797 69 17 0 chr11 117426981 117427097 -4416759 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 9 1480 192 158 0 0 chr11 117428146 117428184 -4415672 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 9 1480 817 300 151 7 chr11 117428196 117428501 -4415355 - ORR1E LTR MaLR -10 349 1 9 1480 813 158 0 0 chr11 117428825 117429002 -4414854 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1480 630 168 0 22 chr11 117429045 117429228 -4414628 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1480 931 223 43 70 chr11 117429233 117429532 -4414324 - B4A SINE B4 0 292 2 9 1480 566 257 28 0 chr11 117430389 117430533 -4413323 + B1_Mur1 SINE Alu 2 149 0 9 1480 228 163 0 0 chr11 117430554 117430597 -4413259 + GA-rich Low_complexity Low_complexity 3 45 0 9 1480 188 214 18 0 chr11 117430855 117430911 -4412945 + GA-rich Low_complexity Low_complexity 1 57 0 9 1480 286 135 39 0 chr11 117431242 117431294 -4412562 + B2_Mm2 SINE B2 4 57 -138 9 1480 456 262 97 20 chr11 117431952 117432147 -4411709 + ID_B1 SINE B4 5 214 -10 9 1480 3029 70 12 7 chr11 117432605 117433010 -4410846 - MTB_Mm LTR MaLR 0 407 1 9 1480 198 208 0 0 chr11 117433703 117433751 -4410105 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1480 561 207 11 22 chr11 117434289 117434467 -4409389 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 9 1480 515 314 17 0 chr11 117434470 117434741 -4409115 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 9 1480 267 31 0 0 chr11 117434776 117434808 -4409048 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1480 1174 118 109 38 chr11 117435667 117435878 -4407978 - URR1A DNA MER1_type 0 226 1 9 1480 372 94 0 0 chr11 117436458 117436511 -4407345 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1480 301 75 38 0 chr11 117437081 117437134 -4406722 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1480 453 241 16 57 chr11 117437150 117437273 -4406583 - PB1D7 SINE Alu -2 118 1 9 1480 345 236 34 0 chr11 117437273 117437362 -4406494 - PB1D10 SINE Alu -1 116 25 9 1480 230 256 0 49 chr11 117437385 117437403 -4406453 + polypyrimidine Low_complexity Low_complexity 65 81 0 9 1480 186 43 0 0 chr11 117437403 117437426 -4406430 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 9 1480 230 256 0 49 chr11 117437426 117437489 -4406367 + CT-rich Low_complexity Low_complexity 4 64 0 9 1480 612 0 0 0 chr11 117437583 117437651 -4406205 + (GAA)n Simple_repeat Simple_repeat 2 69 0 9 1480 641 124 6 18 chr11 117437770 117437934 -4405922 + (TG)n Simple_repeat Simple_repeat 2 163 0 9 1480 367 149 0 18 chr11 117437934 117438043 -4405813 + GA-rich Low_complexity Low_complexity 2 108 0 9 1480 417 20 0 0 chr11 117438043 117438093 -4405763 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1480 776 216 142 0 chr11 117438349 117438525 -4405331 + ID_B1 SINE B4 5 205 -19 9 1480 351 0 0 0 chr11 117439681 117439720 -4404136 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1480 302 250 22 22 chr11 117439725 117439815 -4404041 - HAL1-3A_ME LINE L1 -793 2065 1976 9 1480 510 197 0 0 chr11 117439821 117439963 -4403893 + (TG)n Simple_repeat Simple_repeat 2 143 0 9 1480 656 248 14 7 chr11 117439977 117440123 -4403733 - RSINE1 SINE B4 -11 154 8 9 1480 315 0 0 0 chr11 117440273 117440308 -4403548 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1480 246 32 0 0 chr11 117440308 117440338 -4403518 + (GA)n Simple_repeat Simple_repeat 1 31 0 9 2 419 239 17 11 chr11 117440373 117440551 -4403305 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 1481 501 71 0 0 chr11 117441438 117441508 -4402348 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 1481 993 225 49 4 chr11 117441525 117441770 -4402086 - Lx7 LINE L1 -304 7392 7137 9 1481 784 231 32 13 chr11 117441810 117441968 -4401888 - RSINE1 SINE B4 -2 163 3 9 1481 869 209 102 0 chr11 117442008 117442195 -4401661 - B3 SINE B2 -7 209 4 9 1481 438 20 0 0 chr11 117442299 117442350 -4401506 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1481 1046 166 43 19 chr11 117443024 117443233 -4400623 - B3 SINE B2 0 216 3 9 1481 280 255 47 38 chr11 117443234 117443340 -4400516 - PB1D10 SINE Alu -6 111 5 9 1481 307 284 11 43 chr11 117443618 117443710 -4400146 - RMER30 DNA MER1_type -2 200 112 9 1481 1167 68 0 0 chr11 117443715 117443861 -4399995 + B1_Mus2 SINE Alu 2 147 0 9 1481 216 0 0 0 chr11 117443861 117443885 -4399971 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1481 1307 105 33 0 chr11 117443912 117444093 -4399763 - B2_Mm1t SINE B2 -5 188 2 9 1481 665 184 35 130 chr11 117444093 117444267 -4399589 - B3A SINE B2 -2 196 41 9 1481 1657 42 5 0 chr11 117444267 117444459 -4399397 - B2_Mm1a SINE B2 0 193 1 9 1481 665 184 35 130 chr11 117444459 117444484 -4399372 - B3A SINE B2 -158 40 16 9 1481 1700 26 0 5 chr11 117444485 117444679 -4399177 + B2_Mm1a SINE B2 1 193 0 9 1481 261 0 0 0 chr11 117444747 117444776 -4399080 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 9 1481 256 299 52 0 chr11 117444778 117444855 -4399001 - RMER30 DNA MER1_type -113 89 9 9 1481 254 310 35 12 chr11 117444960 117445045 -4398811 - L2b LINE L2 -2 3373 3287 9 1481 985 151 73 17 chr11 117445077 117445283 -4398573 - ORR1C2 LTR MaLR -7 377 132 9 1481 758 312 77 28 chr11 117445308 117445424 -4398432 - MLT1B LTR MaLR -18 372 253 9 1481 1100 237 177 17 chr11 117445424 117445785 -4398071 - MTD LTR MaLR 0 419 1 9 1481 758 312 77 28 chr11 117445785 117445991 -4397865 - MLT1B LTR MaLR -138 252 34 9 1481 1454 169 140 45 chr11 117446062 117446110 -4397746 - ORR1B2 LTR MaLR 0 367 325 9 1481 1672 26 5 0 chr11 117446110 117446301 -4397555 - B2_Mm1t SINE B2 -1 192 1 9 1481 1454 169 140 45 chr11 117446301 117446587 -4397269 - ORR1B2 LTR MaLR -43 324 1 9 1481 1126 280 23 46 chr11 117446637 117446778 -4397078 - ID_B1 SINE B4 -4 288 155 9 1481 1651 186 102 12 chr11 117446778 117447121 -4396735 - ORR1D1 LTR MaLR 0 374 1 9 1481 1126 214 9 27 chr11 117447121 117447268 -4396588 - ID_B1 SINE B4 -70 154 8 9 1481 306 159 0 0 chr11 117447319 117447388 -4396468 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1481 281 316 26 0 chr11 117448421 117448535 -4395321 + (TGAA)n Simple_repeat Simple_repeat 3 119 0 9 1481 351 226 214 53 chr11 117448911 117449042 -4394814 + B4A SINE B4 1 152 -140 9 1481 1234 235 32 107 chr11 117449042 117449452 -4394404 - MTE2a LTR MaLR 0 379 1 9 1481 204 156 22 0 chr11 117450022 117450067 -4393789 + T-rich Low_complexity Low_complexity 3 48 0 9 1481 248 184 11 44 chr11 117450290 117450381 -4393475 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 9 1481 24 0 0 0 chr11 117450417 117450441 -4393415 + AT_rich Low_complexity Low_complexity 1 24 0 9 1481 1385 109 99 0 chr11 117451762 117451964 -4391892 + URR1A DNA MER1_type 1 222 -4 9 1481 253 268 42 0 chr11 117452117 117452173 -4391683 + MLT1H2 LTR MaLR 364 422 -67 9 1481 1496 158 92 10 chr11 117452173 117452479 -4391377 - ORR1D1 LTR MaLR 0 374 44 9 1481 862 164 0 35 chr11 117452558 117452703 -4391153 - B1_Mur4 SINE Alu -9 141 2 9 1481 207 0 0 0 chr11 117452722 117452745 -4391111 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1481 269 194 29 15 chr11 117452785 117452853 -4391003 - MLT1A1 LTR MaLR 0 408 340 9 1481 555 132 0 0 chr11 117453005 117453096 -4390760 + (TG)n Simple_repeat Simple_repeat 1 91 0 9 1481 492 242 29 59 chr11 117453518 117453654 -4390202 + ID_B1 SINE B4 80 211 -13 9 1481 216 0 0 0 chr11 117453654 117453678 -4390178 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1481 300 304 0 0 chr11 117453713 117453792 -4390064 + (TG)n Simple_repeat Simple_repeat 2 80 0 9 1481 285 314 0 0 chr11 117453793 117453863 -4389993 - B4A SINE B4 0 292 223 9 1481 462 79 0 0 chr11 117455296 117455359 -4388497 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 9 1481 1399 70 5 61 chr11 117455409 117455606 -4388250 + B2_Mm1a SINE B2 3 188 -5 9 1481 525 133 274 9 chr11 117455629 117455735 -4388121 - B1_Mus2 SINE Alu -13 134 1 9 1481 1193 75 0 0 chr11 117455764 117455911 -4387945 + B1_Mus1 SINE Alu 2 148 0 9 1481 271 234 200 11 chr11 117456079 117456174 -4387682 - RSINE1 SINE B4 -28 137 25 9 1481 679 248 30 0 chr11 117456341 117456521 -4387335 + B3A SINE B2 1 184 -32 9 1481 180 306 0 20 chr11 117457614 117457664 -4386192 + L2a LINE L2 3366 3414 -12 9 1481 208 318 0 11 chr11 117460977 117461066 -4382790 + CT-rich Low_complexity Low_complexity 2 89 0 9 1481 219 208 75 0 chr11 117462434 117462487 -4381369 + GA-rich Low_complexity Low_complexity 3 59 0 9 1481 534 258 8 0 chr11 117463178 117463306 -4380550 + RSINE1 SINE B4 6 134 -31 9 1481 1290 20 7 0 chr11 117464715 117464861 -4378995 + B1_Mm SINE Alu 1 147 0 9 1481 468 51 0 0 chr11 117464872 117464931 -4378925 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 9 1481 969 129 0 64 chr11 117464934 117465091 -4378765 + B1_Mus1 SINE Alu 1 147 -1 9 1481 687 300 71 25 chr11 117466620 117466859 -4376997 + B4A SINE B4 36 285 -7 9 1481 327 350 101 16 chr11 117466957 117467146 -4376710 - Lx8 LINE L1 -235 7238 7034 9 1481 1000 254 88 4 chr11 117468238 117468487 -4375369 + B4A SINE B4 2 271 -21 9 1481 527 117 11 0 chr11 117468508 117468602 -4375254 + (CA)n Simple_repeat Simple_repeat 1 95 0 9 1481 450 263 8 66 chr11 117468836 117468958 -4374898 + PB1D7 SINE Alu 1 115 -5 9 1481 925 241 28 0 chr11 117469122 117469334 -4374522 - ID_B1 SINE B4 -3 221 4 9 1481 262 164 48 32 chr11 117470708 117470791 -4373065 + (GGGTG)n Simple_repeat Simple_repeat 1 84 0 9 1481 1273 222 103 15 chr11 117471199 117471528 -4372328 + MTEa LTR MaLR 15 372 -7 9 1481 580 192 20 36 chr11 117471945 117472128 -4371728 + MTE2b LTR MaLR 19 266 -113 9 1481 539 40 14 0 chr11 117472128 117472202 -4371654 + (TC)n Simple_repeat Simple_repeat 2 76 0 9 1481 542 226 96 13 chr11 117472202 117472359 -4371497 + MTE2b LTR MaLR 210 379 0 9 1481 441 0 0 0 chr11 117472972 117473021 -4370835 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1481 348 318 132 108 chr11 117473090 117473429 -4370427 - MLT1E3 LTR MaLR -3 621 212 9 1481 22 0 0 0 chr11 117474090 117474112 -4369744 + AT_rich Low_complexity Low_complexity 1 22 0 1 1481 313 279 4 8 chr11 117474816 117475079 -4368777 + (TA)n Simple_repeat Simple_repeat 1 261 0 1 1481 318 143 0 0 chr11 117475154 117475210 -4368646 - ORR1E LTR MaLR 0 379 324 1 1481 1166 166 64 15 chr11 117475210 117475376 -4368480 + B3 SINE B2 1 179 -37 1 1481 405 0 0 0 chr11 117475376 117475421 -4368435 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1481 1166 166 64 15 chr11 117475421 117475456 -4368400 + B3 SINE B2 180 211 -5 1 1481 532 261 14 21 chr11 117475472 117475613 -4368243 - ORR1E LTR MaLR -171 188 49 1 1481 198 173 84 96 chr11 117478335 117478418 -4365438 + MIRb SINE MIR 114 195 -73 1 1481 525 297 12 29 chr11 117478531 117478701 -4365155 + B4A SINE B4 125 291 -1 1 1481 208 255 20 0 chr11 117479430 117479481 -4364375 + CT-rich Low_complexity Low_complexity 1 52 0 1 1481 333 0 0 0 chr11 117479489 117479526 -4364330 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1481 1088 280 11 7 chr11 117480491 117480775 -4363081 - B4 SINE B4 -7 285 1 1 1481 655 160 35 3 chr11 117481375 117481702 -4362154 + (TG)n Simple_repeat Simple_repeat 1 337 0 1 1481 1085 238 4 65 chr11 117481702 117481980 -4361876 - B4 SINE B4 0 292 32 1 1481 387 0 0 0 chr11 117482137 117482180 -4361676 + (TAA)n Simple_repeat Simple_repeat 1 43 0 1 1481 989 230 152 18 chr11 117482455 117482783 -4361073 - ORR1D1 LTR MaLR 0 374 3 1 1481 709 225 34 27 chr11 117483028 117483174 -4360682 - B1_Mur1 SINE Alu 0 149 3 1 1481 239 210 145 0 chr11 117483504 117483566 -4360290 - PB1D10 SINE Alu -18 99 29 1 1481 1368 80 0 6 chr11 117483670 117483846 -4360010 + B2_Mm2 SINE B2 2 176 -19 1 1481 323 23 23 0 chr11 117483882 117483926 -4359930 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1481 229 282 0 76 chr11 117483934 117484026 -4359830 - MLT1A1 LTR MaLR -322 86 2 1 1481 839 274 33 42 chr11 117484081 117484321 -4359535 + B4A SINE B4 2 239 -53 1 1481 751 245 124 45 chr11 117484317 117484582 -4359274 + ORR1E LTR MaLR 5 290 -69 1 1481 297 175 35 0 chr11 117484568 117484625 -4359231 + URR1B DNA MER1_type 167 225 0 1 1481 2116 202 52 176 chr11 117484647 117484911 -4358945 + RMER15 LTR ERVL 1 289 -286 1 1481 1615 47 0 30 chr11 117484911 117485110 -4358746 + B2_Mm1t SINE B2 1 193 0 1 1481 2116 202 52 176 chr11 117485110 117485122 -4358734 + RMER15 LTR ERVL 290 295 -280 1 1481 1260 48 0 0 chr11 117485122 117485268 -4358588 + B1_Mus1 SINE Alu 3 148 0 1 1481 2116 202 52 176 chr11 117485268 117485364 -4358492 + RMER15 LTR ERVL 296 303 -272 1 1481 750 23 0 0 chr11 117485364 117485452 -4358404 + (GGAA)n Simple_repeat Simple_repeat 2 89 0 1 1481 2116 202 52 176 chr11 117485452 117485732 -4358124 + RMER15 LTR ERVL 304 574 -1 1 1481 269 388 12 58 chr11 117485810 117485858 -4357998 + MLT1D LTR MaLR 71 117 -388 1 1481 911 273 0 5 chr11 117485858 117486057 -4357799 + B3A SINE B2 1 198 0 1 1481 269 388 12 58 chr11 117486057 117486249 -4357607 + MLT1D LTR MaLR 118 300 -205 1 1481 817 242 49 29 chr11 117486511 117486754 -4357102 - MER97c DNA MER1_type? -348 742 495 1 1481 325 352 67 43 chr11 117486869 117487122 -4356734 + B4 SINE B4 50 281 -11 1 1481 492 18 0 0 chr11 117487125 117487182 -4356674 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1481 21 57 0 0 chr11 117487200 117487235 -4356621 + AT_rich Low_complexity Low_complexity 1 35 0 1 1481 829 184 13 20 chr11 117487235 117487385 -4356471 - B1_Mur1 SINE Alu 0 149 1 1 1481 230 205 12 0 chr11 117487394 117487477 -4356379 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1481 847 213 44 49 chr11 117487483 117487666 -4356190 - B3A SINE B2 -16 182 1 1 1481 504 0 0 0 chr11 117489000 117489056 -4354800 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1481 526 234 49 21 chr11 117489111 117489255 -4354601 - B1F SINE Alu 0 149 2 1 1481 667 283 0 7 chr11 117490478 117490631 -4353225 + RSINE1 SINE B4 10 161 -4 1 1481 654 222 27 27 chr11 117490758 117490906 -4352950 + B3 SINE B2 1 148 -68 1 1481 241 204 0 20 chr11 117490927 117490945 -4352911 + polypurine Low_complexity Low_complexity 3 20 0 1 1481 1154 68 7 0 chr11 117490945 117491092 -4352764 + B1_Mus1 SINE Alu 1 148 0 1 1481 241 204 0 20 chr11 117491092 117491123 -4352733 + polypurine Low_complexity Low_complexity 21 50 0 1 1481 273 333 189 27 chr11 117491379 117491527 -4352329 - B3A SINE B2 -25 173 2 1 1481 225 0 0 0 chr11 117491593 117491618 -4352238 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1481 1038 95 7 20 chr11 117491618 117491759 -4352097 - B1_Mus1 SINE Alu -7 141 1 1 1481 1563 43 5 0 chr11 117491771 117491957 -4351899 - B2_Mm1t SINE B2 -5 188 2 1 1481 1657 16 27 0 chr11 117492154 117492342 -4351514 + B2_Mm1a SINE B2 1 193 0 1 1481 654 226 197 17 chr11 117492725 117492918 -4350938 + B4A SINE B4 48 274 -18 1 1481 412 343 0 11 chr11 117492950 117493130 -4350726 + (CATA)n Simple_repeat Simple_repeat 3 180 0 1 1481 622 161 14 28 chr11 117493841 117494206 -4349650 + (CA)n Simple_repeat Simple_repeat 1 359 0 1 1481 527 167 25 0 chr11 117494242 117494404 -4349452 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1481 819 0 0 0 chr11 117495745 117495836 -4348020 + (TTC)n Simple_repeat Simple_repeat 3 93 0 1 1481 922 26 0 0 chr11 117495837 117495953 -4347903 - B1_Mus1 SINE Alu -6 142 27 1 1481 762 279 66 33 chr11 117496025 117496266 -4347590 - B4 SINE B4 -1 291 43 1 1481 784 213 90 15 chr11 117496281 117496481 -4347375 - B3 SINE B2 0 216 2 1 1481 221 111 56 0 chr11 117496977 117497013 -4346843 + B1_Mus2 SINE Alu 83 120 -27 1 1481 486 0 0 0 chr11 117497014 117497068 -4346788 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1481 489 47 0 0 chr11 117497068 117497131 -4346725 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1481 270 152 0 0 chr11 117497136 117497195 -4346661 + GA-rich Low_complexity Low_complexity 2 60 0 1 1481 888 173 0 0 chr11 117497220 117497399 -4346457 + GA-rich Low_complexity Low_complexity 2 180 0 1 1481 253 109 36 0 chr11 117497408 117497463 -4346393 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1481 802 250 13 54 chr11 117497481 117497705 -4346151 - B3 SINE B2 -1 215 1 1 1481 273 312 12 0 chr11 117498288 117498368 -4345488 + B4A SINE B4 1 81 -211 1 1481 1020 189 68 10 chr11 117498375 117498567 -4345289 + B3 SINE B2 1 203 -13 1 1481 821 190 6 0 chr11 117498567 117498746 -4345110 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1481 274 182 0 0 chr11 117498760 117498815 -4345041 + B4A SINE B4 167 221 -71 1 1481 698 174 88 36 chr11 117499096 117499233 -4344623 - B1_Mus1 SINE Alu -1 147 4 1 1481 549 256 65 43 chr11 117499261 117499400 -4344456 + RSINE1 SINE B4 5 146 -19 1 1481 504 116 0 0 chr11 117499400 117499495 -4344361 + (TC)n Simple_repeat Simple_repeat 1 95 0 1 1481 180 0 0 0 chr11 117499504 117499524 -4344332 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1481 22 0 0 0 chr11 117499595 117499617 -4344239 + AT_rich Low_complexity Low_complexity 1 22 0 1 1481 225 0 0 0 chr11 117500377 117500402 -4343454 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 1 1481 799 335 32 16 chr11 117501136 117501506 -4342350 - MTE2b LTR MaLR -3 376 1 2 1481 2042 108 15 68 chr11 117501857 117502196 -4341660 + ORR1A4 LTR MaLR 1 321 -8 3 1481 1441 80 16 11 chr11 117502219 117502409 -4341447 + B2_Mm2 SINE B2 1 191 -4 4 1481 241 116 47 0 chr11 117502455 117502498 -4341358 + B3 SINE B2 172 216 0 5 1481 304 260 19 9 chr11 117502510 117502536 -4341320 + RCHARR1 DNA MER1_type 799 824 -150 6 1481 302 67 22 0 chr11 117502536 117502581 -4341275 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1481 304 260 19 9 chr11 117502581 117502659 -4341197 + RCHARR1 DNA MER1_type 825 904 -70 6 1481 1056 227 24 0 chr11 117502659 117502866 -4340990 - B3 SINE B2 -3 213 2 8 1481 929 180 0 4 chr11 117502900 117503187 -4340669 + (TA)n Simple_repeat Simple_repeat 1 285 0 9 1481 627 242 84 12 chr11 117503617 117503784 -4340072 + B3A SINE B2 1 179 -19 1 1481 231 189 0 0 chr11 117503806 117503859 -4339997 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1481 258 272 32 32 chr11 117504852 117504947 -4338909 - L2a LINE L2 0 3426 3332 1 1481 476 188 94 0 chr11 117505137 117505222 -4338634 - ID_B1 SINE B4 -22 202 110 1 1481 371 214 0 14 chr11 117505220 117505291 -4338565 - tRNA-Ala-GCY_ tRNA tRNA -5 70 1 1 1481 836 256 66 25 chr11 117505296 117505540 -4338316 + MLT2D LTR ERVL 96 349 -65 1 1481 364 147 29 0 chr11 117505540 117505642 -4338214 + (TCTG)n Simple_repeat Simple_repeat 2 106 0 1 1481 198 103 0 0 chr11 117506580 117506609 -4337247 + (ATGGTG)n Simple_repeat Simple_repeat 1 29 0 1 1481 499 165 18 0 chr11 117506612 117506721 -4337135 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 1481 552 120 109 18 chr11 117506721 117506831 -4337025 - B4A SINE B4 0 292 173 1 1481 274 248 0 3 chr11 117506833 117506908 -4336948 - L2b LINE L2 -2 3424 3300 2 1481 1041 208 14 14 chr11 117507149 117507364 -4336492 - B3 SINE B2 0 216 2 2 1481 387 0 0 0 chr11 117507448 117507491 -4336365 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1481 717 261 62 29 chr11 117507538 117507747 -4336109 - B4A SINE B4 -76 216 1 2 1481 528 239 18 0 chr11 117507803 117507912 -4335944 - B1_Mur1 SINE Alu -30 119 9 2 1481 395 240 21 0 chr11 117507922 117508018 -4335838 - ID_B1 SINE B4 -2 222 125 2 1481 2345 89 16 0 chr11 117508633 117508947 -4334909 + ORR1A2 LTR MaLR 1 319 -8 2 1481 940 186 58 5 chr11 117509368 117509557 -4334299 - B3 SINE B2 -14 202 4 2 1481 490 271 15 29 chr11 117509568 117509705 -4334151 - ID_B1 SINE B4 -6 218 84 2 1481 258 81 0 0 chr11 117510003 117510040 -4333816 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1481 756 107 0 0 chr11 117510040 117510151 -4333705 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 1481 525 268 0 18 chr11 117510207 117510321 -4333535 - RSINE1 SINE B4 -51 114 3 3 1481 410 282 97 39 chr11 117510348 117510503 -4333353 - RSINE1 SINE B4 0 165 2 3 1481 656 196 164 1 chr11 117510522 117510665 -4333191 + B3 SINE B2 1 162 -54 3 1481 280 77 39 0 chr11 117510665 117510717 -4333139 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1481 410 259 111 53 chr11 117510717 117510744 -4333112 + B2_Mm2 SINE B2 152 181 -14 3 1481 316 222 16 0 chr11 117511175 117511238 -4332618 - MIRm SINE MIR 0 276 213 3 1481 286 280 66 13 chr11 117511494 117511570 -4332286 - ID4 SINE ID -2 81 2 3 1481 980 123 77 0 chr11 117511718 117511873 -4331983 - B2_Mm2 SINE B2 -27 168 2 3 1481 463 176 0 12 chr11 117511912 117511998 -4331858 + MTC LTR MaLR 329 413 -8 3 1481 446 239 87 0 chr11 117512092 117512184 -4331672 + PB1D10 SINE Alu 5 104 -13 3 1481 387 319 97 0 chr11 117512247 117512360 -4331496 + B1F SINE Alu 6 129 -20 4 1481 207 0 0 0 chr11 117513144 117513167 -4330689 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1481 662 58 35 2 chr11 117513167 117513274 -4330582 - B1_Mus1 SINE Alu 0 120 1 4 1481 373 243 89 9 chr11 117513183 117513295 -4330561 - B4 SINE B4 -110 182 62 4 1481 488 195 168 8 chr11 117513792 117513911 -4329945 - B1_Mur1 SINE Alu 0 149 12 4 1481 644 319 27 45 chr11 117513916 117514065 -4329791 - B4 SINE B4 -60 232 82 4 1481 372 43 0 0 chr11 117514065 117514111 -4329745 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1481 644 319 27 45 chr11 117514111 117514181 -4329675 - B4 SINE B4 -211 81 17 4 1481 25 31 0 0 chr11 117516061 117516093 -4327763 + GC_rich Low_complexity Low_complexity 1 32 0 4 1481 243 293 26 0 chr11 117516186 117516302 -4327554 + (CCG)n Simple_repeat Simple_repeat 3 121 0 4 1481 22 35 0 0 chr11 117516474 117516503 -4327353 + GC_rich Low_complexity Low_complexity 1 29 0 4 1481 31 44 0 0 chr11 117516529 117516574 -4327282 + GC_rich Low_complexity Low_complexity 1 45 0 5 1481 25 51 0 0 chr11 117516595 117516634 -4327222 + GC_rich Low_complexity Low_complexity 1 39 0 5 1481 886 160 190 16 chr11 117519278 117519462 -4324394 - B3 SINE B2 0 216 1 5 1481 21 36 0 0 chr11 117520953 117520981 -4322875 + AT_rich Low_complexity Low_complexity 1 28 0 5 1481 1317 96 17 0 chr11 117521086 117521263 -4322593 - B2_Mm2 SINE B2 -14 181 2 5 1481 292 353 64 29 chr11 117522072 117522212 -4321644 - MIR SINE MIR -73 189 45 5 1481 810 42 244 8 chr11 117523600 117523719 -4320137 + B1_Mm SINE Alu 1 147 0 5 1481 236 21 39 59 chr11 117523724 117523775 -4320081 + (CAAAAA)n Simple_repeat Simple_repeat 2 51 0 5 1481 462 250 0 0 chr11 117524061 117524149 -4319707 - PB1D10 SINE Alu -6 111 24 5 1481 755 259 26 5 chr11 117524402 117524592 -4319264 + B3A SINE B2 5 198 0 5 1481 339 145 65 0 chr11 117524597 117524659 -4319197 + U3 snRNA snRNA 1 66 -151 6 1481 980 49 49 0 chr11 117525471 117525594 -4318262 - B1_Mus2 SINE Alu -18 129 1 6 1481 195 100 0 0 chr11 117526796 117526826 -4317030 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1481 275 226 0 0 chr11 117527008 117527061 -4316795 + PB1 SINE Alu 50 102 -25 6 1481 537 175 41 0 chr11 117527062 117527159 -4316697 - PB1D9 SINE Alu -17 103 3 6 1481 695 235 0 0 chr11 117527431 117527563 -4316293 + B1_Mur1 SINE Alu 6 137 -12 6 1481 922 100 0 15 chr11 117528665 117528797 -4315059 - B1_Mm SINE Alu -6 141 12 6 1481 198 103 0 0 chr11 117528819 117528848 -4315008 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6 1481 922 323 87 28 chr11 117529049 117529543 -4314313 - MT2A LTR ERVL -10 523 1 6 1481 409 243 77 32 chr11 117529644 117529772 -4314084 - PB1D10 SINE Alu -5 144 7 6 1481 321 247 13 13 chr11 117529809 117529887 -4313969 + B1F SINE Alu 9 86 -63 7 1481 713 157 73 15 chr11 117530008 117530144 -4313712 - B1_Mur2 SINE Alu 0 149 6 7 1481 325 264 126 91 chr11 117530020 117530195 -4313661 - MT2B LTR ERVL -316 285 105 7 1481 848 237 188 97 chr11 117530279 117530620 -4313236 - MTEa LTR MaLR -3 376 5 7 1481 183 42 0 0 chr11 117531512 117531536 -4312320 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1481 1457 44 0 48 chr11 117531536 117531725 -4312131 - B2_Mm2 SINE B2 -14 181 2 7 1481 1150 95 0 0 chr11 117531799 117531947 -4311909 - B1_Mus1 SINE Alu 0 148 1 7 1481 306 242 0 0 chr11 117532005 117532067 -4311789 - ID4 SINE ID -7 76 15 7 1481 368 322 17 9 chr11 117532093 117532209 -4311647 - PB1D10 SINE Alu 0 117 1 7 1481 1179 199 24 5 chr11 117532228 117532440 -4311416 + B3 SINE B2 1 216 0 7 1481 630 254 158 11 chr11 117532466 117532649 -4311207 - B3 SINE B2 -6 210 1 8 1481 1091 193 44 10 chr11 117532659 117532863 -4310993 - B3 SINE B2 0 216 6 8 1481 869 287 130 85 chr11 117533263 117533769 -4310087 - MT2A LTR ERVL -4 529 1 8 1481 279 151 27 27 chr11 117533807 117533882 -4309974 + C-rich Low_complexity Low_complexity 2 76 0 8 1481 941 182 7 0 chr11 117534021 117534169 -4309687 - B1_Mur4 SINE Alu 0 150 2 8 1481 317 259 0 24 chr11 117534242 117534325 -4309531 + ID4 SINE ID 3 83 0 8 1481 189 163 0 0 chr11 117534787 117534836 -4309020 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1481 183 243 95 54 chr11 117534843 117534917 -4308939 - L2 LINE L2 -539 2880 2804 8 1481 2368 113 186 16 chr11 117535142 117535593 -4308263 - RLTR12B LTR ERVK 0 528 1 8 1481 746 300 100 77 chr11 117535601 117535919 -4307937 + L1MEg LINE L1 738 1076 -5008 8 1481 910 221 38 24 chr11 117535919 117536132 -4307724 + B3 SINE B2 1 216 0 9 1481 746 300 100 77 chr11 117536132 117536290 -4307566 + L1MEg LINE L1 1077 1229 -4855 8 1481 509 267 17 0 chr11 117536290 117536406 -4307450 + PB1 SINE Alu 1 118 -9 9 1481 746 300 100 77 chr11 117536406 117536737 -4307119 + L1MEg LINE L1 1230 1565 -4519 8 1481 249 248 86 38 chr11 117537158 117537263 -4306593 + MER105 DNA DNA 20 129 -75 9 1481 1721 16 0 0 chr11 117537292 117537481 -4306375 - B2_Mm1a SINE B2 -4 189 1 9 1481 349 311 93 20 chr11 117537890 117538136 -4305720 + ERVL-E-int LTR ERVL 4816 5079 -588 9 1481 262 286 53 53 chr11 117538821 117538954 -4304902 + LTR50 LTR ERVL 661 793 -2 9 1481 283 178 260 0 chr11 117538984 117539057 -4304799 + B1F2 SINE Alu 51 142 -7 9 1481 354 340 95 0 chr11 117539134 117539373 -4304483 - MLT1E3 LTR MaLR 0 680 323 9 1481 625 243 112 6 chr11 117539474 117539644 -4304212 - MLT1E3 LTR MaLR -436 188 1 9 1481 469 244 158 8 chr11 117539757 117539877 -4303979 - B3A SINE B2 -60 138 1 9 1481 1018 158 11 27 chr11 117540171 117540359 -4303497 + B2_Mm2 SINE B2 2 186 -9 9 1481 258 105 0 0 chr11 117540537 117540575 -4303281 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1 1481 952 150 7 20 chr11 117540600 117540750 -4303106 - B1_Mur4 SINE Alu -2 148 1 1 1481 547 295 15 8 chr11 117540750 117540883 -4302973 - B1_Mur1 SINE Alu -3 146 13 1 1481 26 30 0 0 chr11 117540883 117540916 -4302940 + AT_rich Low_complexity Low_complexity 1 33 0 1 1481 288 0 0 0 chr11 117540940 117540972 -4302884 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1481 386 279 99 0 chr11 117540972 117541083 -4302773 - RSINE1 SINE B4 -41 124 3 1 1481 1221 59 29 23 chr11 117541465 117541638 -4302218 - B2_Mm2 SINE B2 -14 181 8 1 1481 255 240 35 138 chr11 117542253 117542369 -4301487 + MT2B LTR ERVL 155 258 -343 1 1481 619 261 0 23 chr11 117542282 117542415 -4301441 + B1_Mur1 SINE Alu 19 148 -1 1 1481 824 215 34 17 chr11 117542442 117542617 -4301239 + B3 SINE B2 35 212 -4 1 1481 625 216 9 0 chr11 117542672 117542788 -4301068 - B3A SINE B2 -80 118 2 1 1481 390 329 12 43 chr11 117543274 117543436 -4300420 - RSINE1 SINE B4 -6 159 3 1 1481 791 270 16 115 chr11 117543452 117543695 -4300161 - ID_B1 SINE B4 -4 220 2 1 1481 1316 117 41 23 chr11 117544728 117544946 -4298910 - URR1A DNA MER1_type 0 226 5 1 1481 1608 52 0 0 chr11 117545075 117545266 -4298590 - B2_Mm1t SINE B2 -1 192 2 1 1481 1218 91 24 106 chr11 117545435 117545515 -4298341 - B2_Mm1a SINE B2 -1 192 123 1 1481 1175 55 7 0 chr11 117545515 117545660 -4298196 + B1_Mus2 SINE Alu 2 147 0 1 1481 1218 91 24 106 chr11 117545660 117545787 -4298069 - B2_Mm1a SINE B2 -71 122 2 1 1481 606 264 106 5 chr11 117546795 117546993 -4296863 - LTR41 LTR ERVL -547 221 4 1 1481 241 237 119 0 chr11 117547170 117547229 -4296627 + B1_Mur3 SINE Alu 3 68 -81 1 1481 507 43 87 0 chr11 117547888 117547957 -4295899 + B1_Mm SINE Alu 53 127 -20 1 1481 401 345 104 64 chr11 117548361 117548754 -4295102 - L1MEf LINE L1 -5761 439 31 1 1481 180 0 0 0 chr11 117548756 117548776 -4295080 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1481 271 345 41 75 chr11 117548865 117549012 -4294844 - MLT1E2 LTR MaLR -112 515 374 1 1481 225 243 25 63 chr11 117549108 117549187 -4294669 - MLT1F2 LTR MaLR -410 150 75 1 1481 528 243 40 79 chr11 117550260 117550412 -4293444 + B4 SINE B4 78 223 -69 1 1481 1121 50 0 0 chr11 117550276 117550415 -4293441 + B1_Mus1 SINE Alu 10 148 0 1 1481 188 67 33 0 chr11 117550437 117550467 -4293389 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 1481 588 236 48 41 chr11 117550554 117550700 -4293156 + B1_Mur2 SINE Alu 2 148 -1 1 1481 3831 120 5 20 chr11 117550716 117551322 -4292534 - L1_Mm LINE L1 -1005 4878 4282 1 1481 321 26 0 0 chr11 117551322 117551360 -4292496 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1481 1337 31 0 0 chr11 117551360 117551519 -4292337 - B2_Mm1a SINE B2 -33 160 2 1 1481 959 97 27 34 chr11 117551519 117551668 -4292188 - L1_Mur2 LINE L1 -1597 4280 4133 1 1481 7212 114 26 7 chr11 117551670 117553367 -4290489 + Lx2 LINE L1 4908 6643 -354 1 1481 1470 108 0 30 chr11 117553367 117553597 -4290259 + Lx2 LINE L1 6775 6997 0 1 1481 7212 171 7130 4 chr11 117553597 117553641 -4290215 + Lx2 LINE L1 6644 6652 -345 1 1481 521 320 31 52 chr11 117553723 117553914 -4289942 + B4A SINE B4 106 292 0 1 1481 963 124 106 6 chr11 117554294 117554464 -4289392 - B2_Mm2 SINE B2 -8 187 1 1 1481 580 53 0 0 chr11 117554819 117554894 -4288962 + B1_Mm SINE Alu 73 147 0 1 1481 234 150 0 0 chr11 117554894 117554934 -4288922 + (GAA)n Simple_repeat Simple_repeat 2 41 0 1 1481 1677 22 0 0 chr11 117555742 117555926 -4287930 + B2_Mm1a SINE B2 1 184 -9 1 1481 836 226 89 0 chr11 117555942 117556132 -4287724 - B3 SINE B2 -4 212 6 1 1481 565 178 6 140 chr11 117556185 117556342 -4287514 - B1_Mur2 SINE Alu -13 136 1 1 1481 716 227 77 72 chr11 117556535 117556744 -4287112 + B3 SINE B2 1 210 -6 1 1481 1431 86 5 5 chr11 117557038 117557225 -4286631 - B2_Mm2 SINE B2 -8 187 1 1 1481 651 298 46 29 chr11 117557417 117557697 -4286159 - Lx9 LINE L1 -116 7528 7244 1 1481 436 245 77 32 chr11 117557773 117557929 -4285927 - Lx9 LINE L1 -529 7115 6953 1 1481 704 201 12 43 chr11 117558046 117558207 -4285649 - RMER13B LTR ERVK 0 908 753 1 1481 288 125 0 40 chr11 117558206 117558256 -4285600 + B1_Mur1 SINE Alu 101 148 -1 1 1481 391 247 197 7 chr11 117558315 117558462 -4285394 + RMER21B LTR ERV1 393 567 -275 1 1481 276 249 0 75 chr11 117558469 117558590 -4285266 + RMER21B LTR ERV1 761 835 -112 1 1481 724 190 7 40 chr11 117558735 117558883 -4284973 + B1_Mur4 SINE Alu 3 145 -5 1 1481 597 94 0 0 chr11 117558884 117558969 -4284887 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 1 1481 381 285 63 35 chr11 117559793 117559935 -4283921 - MER5B DNA MER1_type -27 151 6 1 1481 238 288 99 73 chr11 117560177 117560276 -4283580 - LTR41B LTR ERVL 0 758 657 1 1481 794 193 21 0 chr11 117560276 117560416 -4283440 + B1_Mur1 SINE Alu 1 143 -6 1 1481 238 288 99 73 chr11 117560416 117560507 -4283349 - LTR41B LTR ERVL -102 656 563 1 1481 1514 68 5 0 chr11 117560946 117561137 -4282719 + B2_Mm1a SINE B2 2 193 0 1 1481 188 354 98 38 chr11 117561420 117561552 -4282304 - MER5A DNA MER1_type -48 141 2 1 1481 315 209 14 56 chr11 117561770 117561841 -4282015 - ID2 SINE ID -3 80 13 1 1481 279 324 57 0 chr11 117561865 117561970 -4281886 - B1F1 SINE Alu -38 111 1 1 1481 235 276 0 62 chr11 117562041 117562122 -4281734 + GA-rich Low_complexity Low_complexity 3 78 0 1 1481 1191 57 0 0 chr11 117562536 117562677 -4281179 - B1_Mus2 SINE Alu -6 141 1 1 1481 1276 110 10 16 chr11 117562813 117563007 -4280849 - B2_Mm1t SINE B2 0 193 1 1 1481 1253 97 32 11 chr11 117563234 117563421 -4280435 + B2_Mm2 SINE B2 1 191 -4 1 1481 514 216 102 6 chr11 117563483 117563595 -4280261 + B1_Mur2 SINE Alu 40 150 0 1 1481 638 194 97 0 chr11 117563806 117563930 -4279926 - B3 SINE B2 -11 205 70 1 1481 1300 86 37 21 chr11 117564070 117564260 -4279596 - B2_Mm2 SINE B2 -1 194 2 1 1481 943 205 38 28 chr11 117564947 117565158 -4278698 - B3 SINE B2 -1 215 3 1 1481 947 84 205 6 chr11 117565863 117566019 -4277837 + B2_Mm2 SINE B2 1 187 -8 1 1481 731 227 144 16 chr11 117566021 117566209 -4277647 - B3 SINE B2 0 216 5 1 1481 396 0 0 0 chr11 117566560 117566604 -4277252 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1481 1213 68 0 0 chr11 117567057 117567204 -4276652 - B1_Mus2 SINE Alu 0 147 1 1 1481 243 0 0 0 chr11 117567606 117567633 -4276223 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1481 503 268 185 51 chr11 117567633 117568179 -4275677 - L1ME1 LINE L1 -25 6154 5536 1 1481 268 267 9 62 chr11 117568201 117568222 -4275634 - L1ME1 LINE L1 -825 5417 5398 1 1481 2126 168 68 5 chr11 117568222 117568618 -4275238 - MTC LTR MaLR 0 421 1 1 1481 268 267 9 62 chr11 117568618 117568708 -4275148 - L1ME1 LINE L1 -845 5397 5312 1 1481 657 200 30 8 chr11 117569129 117569260 -4274596 + B1_Mur1 SINE Alu 5 138 -11 1 1481 496 172 0 51 chr11 117571327 117571425 -4272431 - B3 SINE B2 -123 93 1 1 185 1450 74 16 0 chr11 117571437 117571626 -4272230 - B2_Mm2 SINE B2 -2 193 2 1 1482 225 275 0 68 chr11 117571747 117571821 -4272035 + ID4_ SINE ID 2 70 -13 1 1482 268 164 0 29 chr11 117571821 117571890 -4271966 + GA-rich Low_complexity Low_complexity 5 71 0 1 1482 333 256 90 0 chr11 117571919 117571997 -4271859 + PB1 SINE Alu 11 95 -32 1 1482 481 237 17 9 chr11 117572004 117572119 -4271737 - ID_B1 SINE B4 0 224 109 1 1482 287 289 169 24 chr11 117572844 117572968 -4270888 - MER58C DNA MER1_type -7 208 67 1 1482 225 0 0 0 chr11 117573228 117573253 -4270603 + (TTAG)n Simple_repeat Simple_repeat 3 27 0 1 1482 467 317 20 46 chr11 117573274 117573426 -4270430 - RSINE1 SINE B4 -15 150 3 1 1482 1198 34 7 33 chr11 117574201 117574353 -4269503 + B1_Mus1 SINE Alu 1 148 0 1 1482 834 226 91 0 chr11 117574795 117574981 -4268875 + B3 SINE B2 3 205 -11 1 1482 269 272 29 115 chr11 117575885 117575989 -4267867 + PB1D9 SINE Alu 20 114 -6 1 1482 342 273 14 136 chr11 117576706 117576846 -4267010 + MT2B LTR ERVL 152 274 -327 1 1482 600 234 41 34 chr11 117576722 117576868 -4266988 + B1_Mur2 SINE Alu 1 147 -2 1 1482 903 162 14 0 chr11 117577601 117577749 -4266107 - B1_Mur4 SINE Alu 0 150 1 1 1482 1562 52 5 0 chr11 117577765 117577956 -4265900 - B2_Mm1a SINE B2 0 193 2 1 1482 24 0 0 0 chr11 117577956 117577980 -4265876 + AT_rich Low_complexity Low_complexity 1 24 0 1 1482 3207 52 106 9 chr11 117578872 117579297 -4264559 - L1_Mus1 LINE L1 0 6567 6102 1 1482 1202 101 16 21 chr11 117579644 117579837 -4264019 + B2_Mm2 SINE B2 3 194 -1 1 1482 25 0 0 0 chr11 117579913 117579938 -4263918 + AT_rich Low_complexity Low_complexity 1 25 0 1 1482 1027 65 51 0 chr11 117579938 117580076 -4263780 - B1_Mus1 SINE Alu 0 148 4 1 1482 897 163 35 20 chr11 117580608 117580793 -4263063 + B3 SINE B2 1 184 -11 1 1482 613 271 157 57 chr11 117580794 117581209 -4262647 - MT2A LTR ERVL 0 584 1 1 1482 3750 166 95 9 chr11 117581245 117581930 -4261926 - MERVL_2A-int LTR ERVL -2089 3672 2929 1 1482 243 0 0 0 chr11 117582000 117582027 -4261829 + (TTGG)n Simple_repeat Simple_repeat 3 29 0 1 1482 378 228 13 0 chr11 117582044 117582123 -4261733 - ID4 SINE ID -3 80 1 1 1482 503 241 17 25 chr11 117586961 117587080 -4256776 + RSINE1 SINE B4 11 128 -37 1 1482 240 329 0 13 chr11 117587726 117587803 -4256053 + ID4_ SINE ID 8 83 0 1 1482 759 256 21 32 chr11 117588685 117588871 -4254985 - B3A SINE B2 -11 187 4 2 1482 735 209 0 0 chr11 117588977 117589092 -4254764 + B1_Mur2 SINE Alu 1 115 -34 2 1482 446 312 27 40 chr11 117589117 117589267 -4254589 + ID_B1 SINE B4 72 219 -5 2 1482 528 289 44 0 chr11 117589134 117589269 -4254587 + B1F1 SINE Alu 6 146 -3 2 1482 1238 103 43 0 chr11 117589272 117589457 -4254399 + B2_Mm1t SINE B2 1 193 0 2 1482 450 240 108 0 chr11 117589577 117589706 -4254150 + B1_Mur2 SINE Alu 1 143 -6 2 1482 22 0 0 0 chr11 117592210 117592232 -4251624 + AT_rich Low_complexity Low_complexity 1 22 0 2 1482 714 309 59 22 chr11 117593737 117594008 -4249848 + B4A SINE B4 2 282 -10 2 1482 1508 68 16 0 chr11 117594176 117594368 -4249488 + B2_Mm2 SINE B2 1 195 0 2 1482 699 188 34 0 chr11 117594476 117594593 -4249263 - B1_Mur1 SINE Alu -9 140 20 2 1482 809 197 7 13 chr11 117595232 117595381 -4248475 + B1_Mur3 SINE Alu 2 149 0 2 1482 1091 101 0 0 chr11 117595383 117595531 -4248325 + B1_Mus1 SINE Alu 1 148 0 2 1482 692 182 7 50 chr11 117596217 117596356 -4247500 + ID_B1 SINE B4 92 224 0 2 1482 263 53 51 34 chr11 117596999 117597058 -4246798 + (TTTTG)n Simple_repeat Simple_repeat 5 64 0 2 1482 765 145 19 76 chr11 117597058 117597215 -4246641 - B1_Mur4 SINE Alu 0 150 3 2 1482 743 255 21 10 chr11 117598076 117598270 -4245586 - B3A SINE B2 -1 197 2 2 1482 482 282 19 75 chr11 117598287 117598448 -4245408 - B3 SINE B2 0 216 65 2 1482 322 283 237 70 chr11 117598489 117598645 -4245211 - B3A SINE B2 -16 182 1 2 1482 275 0 0 28 chr11 117598692 117598728 -4245128 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1482 1347 78 11 32 chr11 117598977 117599163 -4244693 - B2_Mm2 SINE B2 -11 184 3 2 1482 403 302 163 9 chr11 117599171 117599304 -4244552 - PB1D9 SINE Alu 0 149 2 2 1482 467 278 53 46 chr11 117600102 117600253 -4243603 - RSINE1 SINE B4 -8 157 6 2 1482 665 303 123 0 chr11 117600376 117600637 -4243219 + MER82 DNA MER2_type 208 500 -153 2 1482 542 219 9 9 chr11 117601678 117601784 -4242072 + PB1D9 SINE Alu 2 107 -13 2 1482 198 0 0 0 chr11 117604665 117604687 -4239169 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1482 239 318 69 110 chr11 117604696 117604718 -4239138 + B4 SINE B4 73 211 -81 2 1482 776 146 16 0 chr11 117604718 117604841 -4239015 + B1_Mur4 SINE Alu 11 135 -15 2 1482 1651 159 128 54 chr11 117604961 117605352 -4238504 - MTC LTR MaLR 0 421 2 2 1482 215 217 0 0 chr11 117605360 117605406 -4238450 + CT-rich Low_complexity Low_complexity 1 46 0 2 1482 367 244 57 68 chr11 117605406 117605533 -4238323 - B1_Mur2 SINE Alu -21 126 5 2 1482 482 164 250 0 chr11 117605579 117605683 -4238173 - B3 SINE B2 -85 131 2 2 1482 279 0 0 0 chr11 117605699 117605730 -4238126 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1482 354 45 0 0 chr11 117605730 117605773 -4238083 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1482 375 112 12 48 chr11 117605807 117605891 -4237965 - Lx9 LINE L1 -4 7640 7560 2 1482 235 352 11 64 chr11 117605891 117605985 -4237871 + PB1D7 SINE Alu 23 111 -9 2 1482 2112 190 263 16 chr11 117606035 117606161 -4237695 - Lx9 LINE L1 -154 7490 7270 2 1482 186 43 0 0 chr11 117606161 117606184 -4237672 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1482 2112 190 263 16 chr11 117606184 117606677 -4237179 - Lx9 LINE L1 -375 7269 6718 2 1482 280 313 60 17 chr11 117607251 117607368 -4236488 - MLT1A0 LTR MaLR -198 167 46 2 1482 876 208 45 25 chr11 117607370 117607572 -4236284 - B3 SINE B2 -10 206 1 2 1482 622 252 21 36 chr11 117607973 117608113 -4235743 + ID_B1 SINE B4 87 224 0 2 1482 970 156 0 0 chr11 117608130 117608271 -4235585 - B1_Mur3 SINE Alu -6 143 3 2 1482 385 302 54 38 chr11 117608840 117609026 -4234830 - MER105 DNA DNA -8 196 8 2 1482 327 333 11 0 chr11 117611497 117611590 -4232266 - PB1D7 SINE Alu -6 114 21 2 1482 230 333 0 43 chr11 117611529 117611598 -4232258 - B4A SINE B4 -129 163 98 2 1482 391 279 67 27 chr11 117612117 117612142 -4231714 + ID_B1 SINE B4 55 142 -150 2 1482 674 168 8 0 chr11 117612142 117612261 -4231595 + B1_Mur4 SINE Alu 1 120 -30 2 1482 391 279 67 27 chr11 117612261 117612284 -4231572 + ID_B1 SINE B4 143 232 -60 2 1482 371 280 14 126 chr11 117612344 117612413 -4231443 + B1F SINE Alu 22 88 -61 2 1482 1226 54 0 0 chr11 117612413 117612560 -4231296 + B1_Mus1 SINE Alu 2 148 0 2 1482 371 280 14 126 chr11 117612560 117612633 -4231223 + B1F SINE Alu 89 148 -1 2 1482 476 221 82 68 chr11 117612883 117613029 -4230827 + B1_Mur2 SINE Alu 2 149 0 2 1482 264 258 0 57 chr11 117613296 117613366 -4230490 - RMER6B LTR ERVK 0 461 396 2 1482 889 145 0 26 chr11 117613363 117613519 -4230337 - RMER6B LTR ERVK -309 152 1 2 1482 1243 112 0 61 chr11 117613523 117613558 -4230298 - MYSERV6-int LTR ERVK -1197 7762 7740 2 1482 1494 69 16 0 chr11 117613558 117613746 -4230110 - B2_Mm2 SINE B2 -3 192 2 2 1482 1243 112 0 61 chr11 117613746 117613939 -4229917 - MYSERV6-int LTR ERVK -1220 7739 7548 2 1482 345 149 0 69 chr11 117613965 117614037 -4229819 + B1_Mur2 SINE Alu 82 148 -1 2 1482 475 281 1 2 chr11 117614042 117614158 -4229698 + PB1D9 SINE Alu 1 116 -4 2 1482 532 293 133 6 chr11 117614731 117614889 -4228967 + B3A SINE B2 5 182 -16 2 1482 264 315 0 0 chr11 117615099 117615176 -4228680 + ID4 SINE ID 16 92 -60 2 1482 585 177 18 9 chr11 117615481 117615595 -4228261 + ID_B1 SINE B4 104 218 -6 2 1482 317 260 103 37 chr11 117615663 117615799 -4228057 + ID_B1 SINE B4 55 199 -25 2 1482 564 133 20 39 chr11 117615698 117615800 -4228056 + B1_Mus1 SINE Alu 22 121 -27 2 1482 495 299 16 8 chr11 117616026 117616154 -4227702 + ID_B1 SINE B4 91 219 -5 2 1482 698 250 14 0 chr11 117616235 117616379 -4227477 + B1_Mur4 SINE Alu 5 150 0 2 1482 1024 84 0 0 chr11 117617607 117617749 -4226107 - B1_Mus1 SINE Alu -5 143 2 2 1482 1541 38 16 16 chr11 117617983 117618171 -4225685 + B2_Mm2 SINE B2 2 189 -6 2 1482 671 275 12 18 chr11 117618757 117618834 -4225022 + ID SINE ID 3 78 -146 2 1482 350 314 93 28 chr11 117618834 117618942 -4224914 + PB1D10 SINE Alu 1 115 -2 2 1482 288 346 30 8 chr11 117621196 117621330 -4222526 - MLT1B LTR MaLR -84 306 170 2 1482 1415 76 38 0 chr11 117621439 117621623 -4222233 - B2_Mm2 SINE B2 -4 191 1 2 1482 26 30 0 0 chr11 117622694 117622727 -4221129 + AT_rich Low_complexity Low_complexity 1 33 0 2 1482 280 271 41 8 chr11 117622847 117622970 -4220886 + (CGTG)n Simple_repeat Simple_repeat 1 127 0 2 1482 194 57 57 0 chr11 117623033 117623068 -4220788 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 2 1482 26 0 0 0 chr11 117623421 117623447 -4220409 + GC_rich Low_complexity Low_complexity 1 26 0 2 1482 34 55 0 0 chr11 117623542 117623597 -4220259 + AT_rich Low_complexity Low_complexity 1 55 0 2 1482 307 291 96 29 chr11 117623864 117624039 -4219817 + L1MEg LINE L1 2411 2594 -4039 2 1482 292 333 104 25 chr11 117625037 117625200 -4218656 + ID_B1 SINE B4 1 176 -48 2 1482 183 100 0 0 chr11 117627102 117627132 -4216724 + (CCCCCA)n Simple_repeat Simple_repeat 3 32 0 2 1482 248 336 28 46 chr11 117627296 117627405 -4216451 + B4A SINE B4 74 180 -112 2 1482 553 219 33 8 chr11 117627322 117627442 -4216414 + B1_Mus1 SINE Alu 12 134 -14 2 1482 352 204 148 0 chr11 117628349 117628437 -4215419 + B3 SINE B2 31 131 -85 2 1482 521 151 0 51 chr11 117628492 117628590 -4215266 - B1_Mur4 SINE Alu 0 150 58 2 1482 23 33 0 0 chr11 117628593 117628623 -4215233 + AT_rich Low_complexity Low_complexity 1 30 0 2 1482 383 214 256 0 chr11 117629075 117629192 -4214664 + B1F2 SINE Alu 3 149 0 2 1482 220 239 84 74 chr11 117629345 117629440 -4214416 - PB1D7 SINE Alu -13 107 12 2 1482 272 207 42 94 chr11 117629614 117629710 -4214146 + MT2B2 LTR ERVL 157 247 -337 2 1482 393 214 112 0 chr11 117629632 117629730 -4214126 + PB1D7 SINE Alu 12 120 0 2 1482 23 78 0 0 chr11 117629801 117629852 -4214004 + AT_rich Low_complexity Low_complexity 1 51 0 2 1482 1368 70 41 0 chr11 117629855 117630027 -4213829 + B2_Mm2 SINE B2 3 181 -14 2 1482 1346 213 37 25 chr11 117630945 117631267 -4212589 + MTEb LTR MaLR 54 379 0 2 1482 551 242 48 0 chr11 117631649 117631773 -4212083 - B1F2 SINE Alu -18 131 2 2 1482 698 157 74 0 chr11 117632298 117632419 -4211437 + B3 SINE B2 1 130 -86 2 1482 253 149 43 65 chr11 117632456 117632503 -4211353 + T-rich Low_complexity Low_complexity 49 95 0 2 1482 1216 63 0 0 chr11 117632503 117632646 -4211210 - B1_Mus1 SINE Alu -5 143 1 2 1482 253 149 43 65 chr11 117632646 117632691 -4211165 + T-rich Low_complexity Low_complexity 5 48 0 2 1482 769 246 5 62 chr11 117632721 117632929 -4210927 + B3A SINE B2 1 196 -2 2 1482 438 239 28 0 chr11 117632957 117633066 -4210790 + B1F1 SINE Alu 5 116 -33 2 1482 220 278 0 0 chr11 117633086 117633140 -4210716 + PB1D7 SINE Alu 67 120 0 2 1482 578 86 194 0 chr11 117633147 117633240 -4210616 + PB1D9 SINE Alu 5 115 -5 2 1482 256 274 119 0 chr11 117633361 117633445 -4210411 + RSINE1 SINE B4 8 101 -64 2 1482 591 15 0 0 chr11 117633447 117633515 -4210341 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1482 988 142 7 7 chr11 117633547 117633696 -4210160 + B1_Mur3 SINE Alu 1 149 0 2 1482 957 157 0 0 chr11 117635744 117635916 -4207940 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 3 1482 260 364 12 12 chr11 117635916 117636083 -4207773 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 3 1482 183 156 0 0 chr11 117636083 117636115 -4207741 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 3 1482 1191 134 122 15 chr11 117636562 117636766 -4207090 - URR1A DNA MER1_type 0 226 1 3 1482 510 61 0 0 chr11 117637227 117637293 -4206563 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1482 993 266 81 20 chr11 117638124 117638255 -4205601 + MTE2a LTR MaLR 1 138 -241 3 1482 306 0 0 0 chr11 117638255 117638289 -4205567 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1482 1096 66 7 0 chr11 117638289 117638426 -4205430 - B1_Mus2 SINE Alu -9 138 1 3 1482 993 266 81 20 chr11 117638426 117638650 -4205206 + MTE2a LTR MaLR 139 378 -1 3 1482 198 268 40 40 chr11 117642395 117642469 -4201387 - MIR SINE MIR -116 146 73 3 1482 686 182 84 42 chr11 117643118 117643261 -4200595 + B1_Mur2 SINE Alu 1 149 0 3 1482 1166 83 0 0 chr11 117643885 117644030 -4199826 + B1_Mus1 SINE Alu 4 148 0 3 1482 741 208 15 0 chr11 117645729 117645859 -4197997 + B1_Mus2 SINE Alu 3 134 -13 3 1482 187 250 231 0 chr11 117645931 117645983 -4197873 + MIRm SINE MIR 91 154 -122 3 1482 630 202 0 9 chr11 117646696 117646811 -4197045 + PB1D9 SINE Alu 1 114 -6 3 1482 510 242 29 57 chr11 117646834 117646974 -4196882 + B1F1 SINE Alu 3 138 -11 3 1482 563 285 37 31 chr11 117646978 117647141 -4196715 + RSINE1 SINE B4 2 165 0 3 1482 186 227 0 0 chr11 117647141 117647185 -4196671 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1482 935 49 162 152 chr11 117647216 117647257 -4196599 + B2_Mm2 SINE B2 1 39 -156 3 1482 1016 66 57 28 chr11 117647257 117647398 -4196458 + B1_Mus2 SINE Alu 2 146 -1 3 1482 935 49 162 152 chr11 117647398 117647547 -4196309 + B2_Mm2 SINE B2 40 193 -2 3 1482 207 0 0 0 chr11 117648193 117648216 -4195640 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1482 988 105 0 0 chr11 117648468 117648611 -4195245 + B1_Mur4 SINE Alu 7 149 -1 3 1482 466 196 113 0 chr11 117648839 117648936 -4194920 + PB1D10 SINE Alu 2 109 -8 3 1482 378 264 5 160 chr11 117648958 117649152 -4194704 + B4A SINE B4 11 174 -118 3 1482 1129 109 0 0 chr11 117649188 117649335 -4194521 + B1_Mus1 SINE Alu 2 148 0 3 1482 210 143 0 0 chr11 117649335 117649370 -4194486 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1482 558 145 78 2 chr11 117649400 117649512 -4194344 - PB1D9 SINE Alu -1 119 1 3 1482 1054 130 102 0 chr11 117649527 117649704 -4194152 - B2_Mm2 SINE B2 0 195 1 3 1482 500 217 9 9 chr11 117649707 117649814 -4194042 - B2_Mm2 SINE B2 -85 110 4 3 1482 297 75 0 0 chr11 117650017 117650057 -4193799 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1482 1240 54 0 0 chr11 117650057 117650204 -4193652 - B1_Mm SINE Alu 0 147 1 3 1482 453 301 60 60 chr11 117650262 117650495 -4193361 + B4A SINE B4 1 233 -59 3 1482 453 257 153 10 chr11 117650497 117650679 -4193177 + B3A SINE B2 8 214 -2 3 1482 481 254 45 0 chr11 117650678 117650788 -4193068 + B1_Mur1 SINE Alu 33 147 -2 3 1482 1122 71 28 0 chr11 117650817 117650958 -4192898 + B1_Mm SINE Alu 1 145 -2 3 1482 398 203 0 0 chr11 117651103 117651172 -4192684 + B1F1 SINE Alu 58 126 -23 3 1482 213 200 0 0 chr11 117651868 117651913 -4191943 + C-rich Low_complexity Low_complexity 2 46 0 3 1482 720 162 8 5 chr11 117653179 117653318 -4190538 + B1F SINE Alu 7 142 -7 3 1482 24 0 0 0 chr11 117654199 117654223 -4189633 + GC_rich Low_complexity Low_complexity 1 24 0 3 1482 247 302 55 30 chr11 117654286 117654401 -4189455 + Charlie7a DNA MER1_type 63 180 -92 3 1482 189 74 0 0 chr11 117654401 117654428 -4189428 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1482 247 302 55 30 chr11 117654428 117654476 -4189380 + Charlie7a DNA MER1_type 181 230 -42 3 1482 1717 131 8 204 chr11 117654710 117655111 -4188745 - RMER17C LTR ERVK 0 410 99 3 1482 1688 16 21 0 chr11 117655111 117655300 -4188556 + B2_Mm1a SINE B2 1 193 0 3 1482 1717 131 8 204 chr11 117655300 117655408 -4188448 - RMER17C LTR ERVK -312 98 1 3 1482 240 289 41 69 chr11 117655874 117655900 -4187956 + YREP_Mm Unknown Unknown 154 294 -1518 3 1482 804 126 0 0 chr11 117655900 117656019 -4187837 - B1_Mur4 SINE Alu -8 142 24 3 1482 243 284 11 43 chr11 117656106 117656198 -4187658 - PB1D10 SINE Alu -28 89 1 3 1482 1177 86 45 70 chr11 117656571 117656771 -4187085 + B2_Mm2 SINE B2 1 195 0 3 1482 1368 85 23 0 chr11 117656784 117656961 -4186895 + B2_Mm2 SINE B2 1 181 -14 3 1482 440 66 316 70 chr11 117657008 117657122 -4186734 + B2_Mm2 SINE B2 47 188 -7 3 1482 2126 136 42 3 chr11 117657915 117658276 -4185580 + RLTR20D LTR ERVK 103 477 -91 3 1482 239 302 61 23 chr11 117658760 117658892 -4184964 - MLT1D LTR MaLR -304 201 65 3 1482 189 0 0 0 chr11 117659231 117659252 -4184604 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1482 251 118 45 34 chr11 117659354 117659442 -4184414 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 1482 573 250 0 15 chr11 117659469 117659599 -4184257 + ID_B1 SINE B4 96 223 -1 3 1482 299 85 0 21 chr11 117660195 117660243 -4183613 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 1482 232 284 0 13 chr11 117660243 117660318 -4183538 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1482 315 296 0 12 chr11 117660329 117660411 -4183445 + CT-rich Low_complexity Low_complexity 2 82 0 3 1482 1101 69 7 33 chr11 117660935 117661085 -4182771 + B1_Mus2 SINE Alu 1 146 -1 3 1482 927 146 7 0 chr11 117661105 117661249 -4182607 + B1_Mur3 SINE Alu 5 149 0 3 1482 1204 128 26 5 chr11 117661253 117661442 -4182414 + B2_Mm2 SINE B2 2 194 -1 3 1482 303 182 0 0 chr11 117661654 117661731 -4182125 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 3 1482 222 62 0 0 chr11 117661941 117661973 -4181883 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1482 206 156 22 0 chr11 117662322 117662367 -4181489 + CT-rich Low_complexity Low_complexity 2 47 0 3 1482 816 65 0 0 chr11 117662380 117662487 -4181369 - B1_Mus2 SINE Alu -40 107 1 3 1482 669 212 45 0 chr11 117662491 117662623 -4181233 - B1_Mur2 SINE Alu 0 149 12 3 1482 360 135 0 0 chr11 117662627 117662701 -4181155 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1482 846 199 5 97 chr11 117662847 117663064 -4180792 - B3A SINE B2 -1 197 1 3 1482 578 218 138 11 chr11 117663634 117663815 -4180041 - B3 SINE B2 -12 204 1 3 1482 1134 80 0 0 chr11 117663883 117664021 -4179835 - B1_Mus1 SINE Alu -9 139 2 3 1482 861 118 7 0 chr11 117664870 117665005 -4178851 + B1_Mus1 SINE Alu 12 147 -1 3 1482 686 43 11 0 chr11 117665018 117665112 -4178744 + (GA)n Simple_repeat Simple_repeat 2 96 0 3 1482 245 355 43 0 chr11 117665133 117665226 -4178630 + MIR SINE MIR 77 173 -89 3 1482 604 199 179 0 chr11 117665490 117665641 -4178215 - B3 SINE B2 0 216 39 3 1482 1184 113 21 26 chr11 117665650 117665680 -4178176 - B2_Mm1a SINE B2 -3 190 162 3 1482 867 90 0 0 chr11 117665680 117665802 -4178054 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 3 1482 1184 113 21 26 chr11 117665802 117665961 -4177895 - B2_Mm1a SINE B2 -32 161 2 3 1482 689 128 160 0 chr11 117665964 117666089 -4177767 - B1_Mus1 SINE Alu 0 148 4 3 1482 545 273 53 31 chr11 117666089 117666272 -4177584 - B3A SINE B2 -18 177 1 3 1482 227 305 0 0 chr11 117666301 117666360 -4177496 - B1F SINE Alu -89 60 2 3 1482 712 205 16 0 chr11 117666570 117666697 -4177159 + B1_Mur4 SINE Alu 9 137 -13 3 1482 291 28 0 0 chr11 117666697 117666733 -4177123 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 1482 1258 34 0 7 chr11 117666772 117666921 -4176935 - B1_Mus1 SINE Alu 0 148 1 3 1482 442 62 62 0 chr11 117668510 117668575 -4175281 + B2_Mm2 SINE B2 2 70 -125 3 1482 240 241 58 92 chr11 117668575 117668597 -4175259 + B4 SINE B4 2 85 -207 3 1482 1192 49 21 0 chr11 117668620 117668763 -4175093 - B1_Mm SINE Alu 0 147 2 3 1482 368 286 0 30 chr11 117669016 117669117 -4174739 + RCHARR1 DNA MER1_type 3 100 -874 3 1482 428 128 0 49 chr11 117669108 117669190 -4174666 + ID_B1 SINE B4 84 161 -63 3 1482 339 258 10 10 chr11 117669114 117669212 -4174644 + B1_Mur4 SINE Alu 10 107 -43 3 1482 802 197 7 13 chr11 117669259 117669408 -4174448 + B1_Mur2 SINE Alu 2 149 0 3 1482 401 268 0 20 chr11 117669430 117669529 -4174327 + RSINE1 SINE B4 23 119 -46 3 1482 753 43 0 0 chr11 117669655 117669748 -4174108 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 1482 214 274 48 0 chr11 117670334 117670396 -4173460 - PB1D10 SINE Alu -3 114 50 3 1482 22 56 0 0 chr11 117670936 117670972 -4172884 + GC_rich Low_complexity Low_complexity 1 36 0 3 1482 318 244 65 3 chr11 117672516 117672604 -4171252 + PB1D7 SINE Alu 32 123 -26 3 1482 851 171 133 46 chr11 117672604 117672800 -4171056 - B3 SINE B2 -1 215 3 3 1482 266 321 44 18 chr11 117672800 117672825 -4171031 + B1F SINE Alu 124 148 -1 3 1482 429 209 100 45 chr11 117672831 117672941 -4170915 + PB1D9 SINE Alu 4 119 -1 3 1482 266 282 67 124 chr11 117672980 117673158 -4170698 + ID_B1 SINE B4 2 169 -55 3 1482 1388 51 73 0 chr11 117673254 117673431 -4170425 - B2_Mm2 SINE B2 -4 191 2 3 1482 731 154 14 56 chr11 117675801 117675945 -4167911 - B1_Mus1 SINE Alu -10 138 1 3 1482 577 174 42 34 chr11 117675956 117676075 -4167781 - PB1D9 SINE Alu 0 120 1 3 1482 270 0 0 0 chr11 117677524 117677554 -4166302 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1482 833 0 10 0 chr11 117677661 117677758 -4166098 + (TG)n Simple_repeat Simple_repeat 2 99 0 3 1482 760 251 140 23 chr11 117677938 117678195 -4165661 - B4 SINE B4 0 292 6 4 1482 694 206 118 37 chr11 117678722 117678909 -4164947 + URR1A DNA MER1_type 1 202 -24 4 1482 402 234 35 40 chr11 117678857 117679031 -4164825 - RMER17C LTR ERVK -138 272 100 4 1482 426 99 86 0 chr11 117679017 117679098 -4164758 + URR1A DNA MER1_type 136 223 -3 4 1482 303 286 135 7 chr11 117679099 117679240 -4164616 + MLT1C LTR MaLR 305 463 -4 4 1482 586 256 75 29 chr11 117679289 117679462 -4164394 + B3 SINE B2 19 199 -17 4 1482 489 268 56 28 chr11 117679479 117679621 -4164235 + ID_B1 SINE B4 13 158 -66 4 1482 681 248 133 6 chr11 117679644 117679802 -4164054 + B3A SINE B2 2 179 -19 4 1482 721 278 48 5 chr11 117680051 117680239 -4163617 - B4A SINE B4 -34 258 63 4 1482 324 283 62 0 chr11 117680289 117680402 -4163454 - PB1D7 SINE Alu 0 120 1 4 1482 229 250 9 103 chr11 117680308 117680424 -4163432 - MT2B2 LTR ERVL -334 250 146 4 1482 274 280 171 33 chr11 117680662 117680843 -4163013 + MER90a LTR ERV1 36 264 -350 4 1482 272 250 193 0 chr11 117681351 117681439 -4162417 + PB1D10 SINE Alu 6 110 -7 4 1482 183 42 0 0 chr11 117682062 117682086 -4161770 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1482 1110 44 0 42 chr11 117682087 117682229 -4161627 - B1_Mus2 SINE Alu -11 136 1 4 1482 571 249 70 32 chr11 117682313 117682500 -4161356 - B3A SINE B2 -3 195 2 4 1482 554 269 31 25 chr11 117682526 117682686 -4161170 - RSINE1 SINE B4 -2 163 3 4 1482 460 196 0 61 chr11 117682686 117682784 -4161072 - PB1D10 SINE Alu -3 114 23 4 1482 471 317 67 0 chr11 117682934 117683114 -4160742 - ID_B1 SINE B4 -26 198 7 4 1482 400 191 124 0 chr11 117683670 117683759 -4160097 - PB1D7 SINE Alu -9 111 12 4 1482 746 282 28 0 chr11 117683785 117683966 -4159890 - B3 SINE B2 -13 203 18 4 1482 219 296 122 0 chr11 117684546 117684644 -4159212 + PB1D10 SINE Alu 2 111 -6 4 1482 782 246 20 35 chr11 117684626 117684828 -4159028 + B3 SINE B2 8 206 -10 4 1482 692 227 30 0 chr11 117684880 117685012 -4158844 + B1_Mur3 SINE Alu 1 136 -13 4 1482 183 42 0 0 chr11 117685012 117685036 -4158820 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 4 1482 1136 82 0 13 chr11 117685146 117685295 -4158561 + B1_Mus2 SINE Alu 1 147 0 4 1482 543 154 100 0 chr11 117687915 117688025 -4155831 + B1_Mur4 SINE Alu 8 128 -22 4 1482 246 271 29 68 chr11 117687941 117688044 -4155812 + RLTR25B LTR ERVK 444 542 -486 4 1482 353 243 100 27 chr11 117688078 117688188 -4155668 + B3A SINE B2 2 119 -79 4 1482 227 242 177 0 chr11 117688670 117688732 -4155124 - ID4 SINE ID -5 78 6 4 1482 336 195 132 59 chr11 117688756 117688892 -4154964 - B1_Mur2 SINE Alu -3 146 1 4 1482 1236 174 0 18 chr11 117689731 117689954 -4153902 + URR1B DNA MER1_type 7 225 0 4 1482 450 276 62 0 chr11 117690096 117690241 -4153615 + ID_B1 SINE B4 55 208 -16 4 1482 314 286 69 22 chr11 117690770 117690925 -4152931 + B3A SINE B2 36 209 -7 4 1482 370 183 209 9 chr11 117690952 117691057 -4152799 + B1F SINE Alu 24 149 0 4 1482 446 267 52 7 chr11 117691056 117691192 -4152664 + ID_B1 SINE B4 78 219 -5 4 1482 349 180 98 33 chr11 117692259 117692351 -4151505 - PB1D10 SINE Alu 0 117 20 4 1482 552 268 19 32 chr11 117692445 117692599 -4151257 - RSINE1 SINE B4 -12 153 2 4 1482 1174 62 7 0 chr11 117692839 117692985 -4150871 + B1_Mus1 SINE Alu 1 147 -1 4 1482 409 192 39 0 chr11 117693098 117693176 -4150680 + B1_Mus2 SINE Alu 1 81 -66 4 1482 427 227 23 0 chr11 117693281 117693369 -4150487 + RSINE1 SINE B4 48 137 -28 4 1482 315 0 0 0 chr11 117693372 117693407 -4150449 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1482 550 230 230 0 chr11 117694137 117694285 -4149571 + B3A SINE B2 2 183 -15 4 1482 1109 69 6 25 chr11 117694307 117694470 -4149386 + B2_Mm1t SINE B2 28 187 -6 4 1482 723 151 24 0 chr11 117694491 117694617 -4149239 - B1_Mus1 SINE Alu -10 138 10 4 1482 1729 26 0 0 chr11 117694784 117694976 -4148880 + B2_Mm1t SINE B2 2 193 0 4 1482 246 217 0 104 chr11 117695027 117695094 -4148762 + PB1D7 SINE Alu 40 99 -21 4 1482 622 242 82 6 chr11 117695098 117695281 -4148575 + ID_B1 SINE B4 8 204 -20 4 1482 225 333 67 30 chr11 117695703 117695751 -4148105 + YREP_Mm Unknown Unknown 131 296 -1512 4 1482 228 218 91 0 chr11 117695744 117695799 -4148057 - PB1D9 SINE Alu 0 120 61 4 1482 526 232 36 0 chr11 117695751 117695863 -4147993 - ID_B1 SINE B4 -7 217 102 4 1482 719 233 138 0 chr11 117695867 117696056 -4147800 - B3 SINE B2 -1 215 1 4 1482 407 241 31 108 chr11 117697196 117697326 -4146530 + PB1 SINE Alu 1 120 -7 4 1482 1189 36 0 0 chr11 117697334 117697471 -4146385 + B1_Mus2 SINE Alu 1 137 -10 4 1482 216 0 0 0 chr11 117697471 117697495 -4146361 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1482 236 320 26 0 chr11 117697509 117697587 -4146269 + ID4_ SINE ID 3 82 -1 4 1482 630 272 0 13 chr11 117697995 117698144 -4145712 - B1F1 SINE Alu -2 147 1 4 1482 642 297 0 25 chr11 117698185 117698344 -4145512 + RSINE1 SINE B4 2 156 -9 4 1482 944 110 0 0 chr11 117698373 117698500 -4145356 + B1_Mus2 SINE Alu 2 128 -19 4 1482 342 67 0 0 chr11 117698647 117698692 -4145164 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1482 613 282 45 50 chr11 117698694 117698748 -4145108 - B4A SINE B4 -9 283 230 4 1482 1221 57 114 6 chr11 117698748 117698924 -4144932 - B2_Mm2 SINE B2 0 195 1 4 1482 613 282 45 50 chr11 117698924 117699089 -4144767 - B4A SINE B4 -63 229 65 4 1482 1600 31 5 5 chr11 117699143 117699335 -4144521 - B2_Mm1a SINE B2 0 193 2 4 1482 496 228 53 0 chr11 117699433 117699547 -4144309 - RSINE1 SINE B4 -37 128 9 4 1482 582 159 37 9 chr11 117699630 117699738 -4144118 - PB1D9 SINE Alu -1 119 9 4 1482 327 259 223 0 chr11 117699638 117699750 -4144106 - B4 SINE B4 -74 218 82 4 1482 236 294 28 32 chr11 117700255 117700365 -4143491 + ID4_ SINE ID 7 115 -37 4 1482 375 202 105 11 chr11 117700375 117700470 -4143386 + PB1D7 SINE Alu 15 118 -2 4 1482 561 314 25 19 chr11 117700470 117700629 -4143227 + RSINE1 SINE B4 2 161 -4 4 1482 920 228 85 70 chr11 117700810 117701231 -4142625 - RMER4B LTR ERVK 0 466 43 4 1482 1205 115 11 11 chr11 117701231 117701407 -4142449 - B2_Mm2 SINE B2 -19 176 1 4 1482 920 214 88 57 chr11 117701407 117701439 -4142417 - RMER4B LTR ERVK -542 43 17 4 1482 243 167 42 0 chr11 117701491 117701539 -4142317 + B1F2 SINE Alu 13 62 -87 4 1482 233 289 46 46 chr11 117701539 117701578 -4142278 + ID_B1 SINE B4 94 180 -44 4 1482 1148 260 122 17 chr11 117701597 117701957 -4141899 - MTD LTR MaLR -4 415 18 4 1482 419 258 25 94 chr11 117701991 117702192 -4141664 - RMER15-int LTR ERVL -4346 653 467 4 1482 452 246 216 32 chr11 117702253 117702471 -4141385 - RMER15 LTR ERVL -2 573 316 4 1482 263 195 112 79 chr11 117702516 117702605 -4141251 - RMER15 LTR ERVL -483 92 1 4 185 273 180 91 174 chr11 117702605 117702709 -4141147 + RLTR25B LTR ERVK 416 509 -519 4 185 810 70 0 9 chr11 117702636 117702752 -4141104 + B1_Mus2 SINE Alu 32 146 -1 4 1483 645 195 165 6 chr11 117702769 117702939 -4140917 + B3A SINE B2 2 198 0 4 1483 265 254 103 63 chr11 117703144 117703270 -4140586 - MTEa LTR MaLR 0 379 249 4 1483 286 211 0 0 chr11 117703417 117703469 -4140387 + B1F SINE Alu 47 98 -51 4 1483 381 281 79 34 chr11 117703440 117703617 -4140239 + Tigger5 DNA MER2_type 2094 2278 -128 4 1483 228 283 0 0 chr11 117703620 117703680 -4140176 - ID_B1 SINE B4 -1 223 164 4 1483 308 314 66 8 chr11 117703746 117703768 -4140088 + B4 SINE B4 61 189 -103 4 1483 390 320 0 0 chr11 117703768 117703868 -4139988 + B1F1 SINE Alu 1 100 -49 4 1483 360 248 68 68 chr11 117703837 117703954 -4139902 - B3A SINE B2 -81 117 1 4 1483 452 307 7 0 chr11 117703967 117704104 -4139752 + Tigger5 DNA MER2_type 2265 2402 -4 4 1483 585 86 0 0 chr11 117704282 117704375 -4139481 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 4 1483 885 90 0 0 chr11 117704375 117704497 -4139359 - B1_Mus2 SINE Alu -25 122 1 4 1483 564 184 88 0 chr11 117704501 117704626 -4139230 - B1_Mus2 SINE Alu 0 147 12 4 1483 221 196 89 0 chr11 117705153 117705209 -4138647 + B1F1 SINE Alu 89 149 0 4 1483 312 264 162 14 chr11 117705210 117705352 -4138504 + RSINE1 SINE B4 3 165 0 4 1483 1475 49 5 21 chr11 117705429 117705617 -4138239 - B2_Mm1a SINE B2 -8 185 1 4 1483 498 181 14 28 chr11 117705625 117705796 -4138060 - B2_Mm2 SINE B2 0 198 1 4 1483 233 172 461 54 chr11 117706687 117706778 -4137078 + B3 SINE B2 1 128 -88 4 1483 1451 85 11 5 chr11 117706848 117707037 -4136819 + B2_Mm2 SINE B2 1 190 -5 4 1483 1784 177 65 39 chr11 117707489 117707737 -4136119 + RLTR20B2 LTR ERVK 4 247 -313 4 1483 1397 95 26 0 chr11 117707737 117707926 -4135930 + B2_Mm2 SINE B2 2 195 0 4 1483 1784 178 351 31 chr11 117707926 117708162 -4135694 + RLTR20B2 LTR ERVK 248 571 -6 4 1483 647 132 213 26 chr11 117708162 117708317 -4135539 + B2_Mm2 SINE B2 4 187 -8 4 1483 683 254 171 17 chr11 117708331 117708571 -4135285 + B4A SINE B4 2 278 -14 4 1483 749 213 207 0 chr11 117708662 117708836 -4135020 + ID_B1 SINE B4 2 211 -13 4 1483 497 244 138 33 chr11 117708931 117709141 -4134715 - RMER4A LTR ERVK -45 566 272 4 1483 680 209 156 18 chr11 117709230 117709454 -4134402 - RMER4A LTR ERVK -211 255 1 4 1483 1177 68 0 20 chr11 117711406 117711556 -4132300 - B1_Mus1 SINE Alu 0 148 2 4 1483 24 53 0 0 chr11 117711557 117711595 -4132261 + AT_rich Low_complexity Low_complexity 1 38 0 4 1483 449 289 66 0 chr11 117711600 117711752 -4132104 - RSINE1 SINE B4 -2 163 2 5 1483 2244 138 73 5 chr11 117711752 117712123 -4131733 + RMER10B LTR ERVL 1 396 -2 5 1483 260 62 0 77 chr11 117712225 117712257 -4131599 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1483 947 222 56 0 chr11 117712257 117712455 -4131401 + B3 SINE B2 3 211 -5 5 1483 260 62 0 77 chr11 117712455 117712474 -4131382 + (A)n Simple_repeat Simple_repeat 1 16 0 5 1483 234 224 20 0 chr11 117712685 117712734 -4131122 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 5 1483 484 148 175 109 chr11 117712932 117712955 -4130901 - B1_Mus1 SINE Alu 0 148 127 5 1483 270 73 0 0 chr11 117712955 117712996 -4130860 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1483 484 148 175 109 chr11 117712996 117713109 -4130747 - B1_Mus1 SINE Alu -22 126 3 5 1483 1344 133 252 14 chr11 117713111 117713401 -4130455 - ORR1B2 LTR MaLR -8 359 1 5 1483 1075 43 0 0 chr11 117713418 117713556 -4130300 + B1_Mus1 SINE Alu 11 148 0 5 1483 1280 120 10 20 chr11 117713583 117713778 -4130078 + B2_Mm1a SINE B2 1 193 0 5 1483 240 329 102 13 chr11 117714419 117714576 -4129280 + MER53 DNA hAT 22 192 -1 5 1483 26 0 0 0 chr11 117714900 117714926 -4128930 + AT_rich Low_complexity Low_complexity 1 26 0 5 1483 625 168 152 0 chr11 117715022 117715147 -4128709 - B1_Mur4 SINE Alu -5 145 2 5 1483 21 0 0 0 chr11 117715240 117715261 -4128595 + AT_rich Low_complexity Low_complexity 1 21 0 5 1483 4171 124 97 10 chr11 117715272 117715966 -4127890 - RMER6A LTR ERVK 0 756 3 5 1483 216 86 0 0 chr11 117716098 117716133 -4127723 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1483 1239 48 0 0 chr11 117716135 117716282 -4127574 - B1_Mm SINE Alu 0 147 1 5 1483 195 42 0 0 chr11 117716296 117716320 -4127536 + (TA)n Simple_repeat Simple_repeat 1 24 0 5 1483 267 258 61 0 chr11 117716347 117716413 -4127443 + ID4_ SINE ID 12 81 -2 5 1483 514 159 103 0 chr11 117717081 117717188 -4126668 - B1F SINE Alu -1 148 31 5 1483 307 200 92 0 chr11 117717516 117717581 -4126275 + MTE2b LTR MaLR 309 379 0 5 1483 485 291 22 15 chr11 117717581 117717716 -4126140 + ID_B1 SINE B4 84 219 -5 5 1483 3056 51 115 3 chr11 117719026 117719418 -4124438 - RLTR10C LTR ERVK 0 436 1 5 1483 249 83 0 0 chr11 117722975 117723011 -4120845 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1483 297 0 0 0 chr11 117723156 117723189 -4120667 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1483 245 316 95 0 chr11 117726908 117727003 -4116853 - PB1D10 SINE Alu -12 105 2 5 1483 2642 68 3 6 chr11 117728001 117728329 -4115527 + ORR1A2 LTR MaLR 1 327 0 5 1483 809 206 13 6 chr11 117729069 117729225 -4114631 - B3 SINE B2 -13 203 47 5 1483 226 339 48 62 chr11 117729276 117729329 -4114527 - L1MEg LINE L1 -5372 712 667 5 1483 657 274 76 33 chr11 117729329 117729540 -4114316 - ID_B1 SINE B4 -4 220 1 5 1483 226 339 48 62 chr11 117729540 117729694 -4114162 - L1MEg LINE L1 -5418 666 508 5 1483 273 345 18 9 chr11 117730382 117730493 -4113363 - MamGypLTR2b LTR Gypsy -782 140 29 5 1483 409 174 126 32 chr11 117730449 117730544 -4113312 - BC1_Mm scRNA scRNA -47 105 2 5 1483 608 218 62 9 chr11 117731191 117731344 -4112512 - B3A SINE B2 -23 170 5 5 1483 186 43 0 0 chr11 117731415 117731438 -4112418 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 1483 1177 15 44 0 chr11 117731440 117731576 -4112280 - B1_Mus1 SINE Alu -6 142 1 5 1483 218 211 77 0 chr11 117731576 117731628 -4112228 - B3A SINE B2 -141 57 2 5 1483 407 250 60 0 chr11 117733091 117733191 -4110665 + PB1D7 SINE Alu 5 110 -10 5 1483 357 299 21 0 chr11 117734236 117734333 -4109523 - MER5A1 DNA MER1_type -18 148 50 5 1483 258 232 108 12 chr11 117735063 117735146 -4108710 - B3A SINE B2 -104 91 1 5 1483 606 312 94 10 chr11 117735266 117735291 -4108565 - ID_B1 SINE B4 0 224 201 5 1483 1252 34 0 7 chr11 117735291 117735438 -4108418 + B1_Mus1 SINE Alu 2 147 -1 5 1483 606 312 94 10 chr11 117735438 117735613 -4108243 - ID_B1 SINE B4 -24 200 7 5 1483 228 127 0 52 chr11 117735613 117735671 -4108185 + C-rich Low_complexity Low_complexity 3 57 0 5 1483 888 110 47 0 chr11 117735696 117735823 -4108033 + B1_Mus1 SINE Alu 1 133 -15 5 1483 302 242 0 0 chr11 117735887 117735949 -4107907 - B3A SINE B2 -38 160 99 5 1483 260 303 0 15 chr11 117736094 117736161 -4107695 + ID2 SINE ID 15 80 -3 5 1483 445 326 95 32 chr11 117736101 117736291 -4107565 + ID_B1 SINE B4 23 224 0 5 1483 189 0 0 0 chr11 117737533 117737554 -4106302 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 5 1483 430 234 0 23 chr11 117737573 117737744 -4106112 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 1483 1155 56 28 0 chr11 117737806 117737949 -4105907 + B1_Mus2 SINE Alu 1 147 0 5 1483 738 316 54 7 chr11 117738726 117739003 -4104853 - B4 SINE B4 0 292 3 5 1483 215 356 81 14 chr11 117739181 117739329 -4104527 + L2b LINE L2 3109 3266 -109 5 1483 483 223 0 67 chr11 117740554 117740674 -4103182 + PB1D7 SINE Alu 9 120 0 5 1483 387 41 0 0 chr11 117741448 117741497 -4102359 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1483 529 261 60 0 chr11 117741524 117741658 -4102198 - B1_Mm SINE Alu -5 142 1 5 1483 381 282 126 13 chr11 117743985 117744136 -4099720 + Tigger5 DNA MER2_type 27 194 -2212 5 1483 198 118 0 0 chr11 117744494 117744528 -4099328 + (C)n Simple_repeat Simple_repeat 1 34 0 5 1483 214 279 0 0 chr11 117744887 117744948 -4098908 + (TTA)n Simple_repeat Simple_repeat 2 62 0 5 1483 327 341 87 0 chr11 117744966 117745092 -4098764 - ID_B1 SINE B4 -13 211 75 5 1483 201 128 51 0 chr11 117745477 117745516 -4098340 + (TCTG)n Simple_repeat Simple_repeat 3 43 0 5 1483 651 260 20 14 chr11 117745584 117745732 -4098124 - B1F SINE Alu 0 149 1 5 1483 1446 77 5 44 chr11 117746832 117747035 -4096821 - B2_Mm2 SINE B2 0 195 1 5 1483 445 184 0 0 chr11 117747271 117747347 -4096509 - PB1D9 SINE Alu 0 120 45 5 1483 251 274 87 103 chr11 117748175 117748200 -4095656 + MT2B LTR ERVL 134 156 -445 5 1483 551 264 56 0 chr11 117748200 117748343 -4095513 + B1F SINE Alu 1 149 0 5 1483 996 217 64 0 chr11 117748346 117748549 -4095307 + B3 SINE B2 1 216 0 5 1483 579 132 198 0 chr11 117748600 117748721 -4095135 + B1_Mur4 SINE Alu 6 150 0 5 1483 180 0 0 0 chr11 117748730 117748750 -4095106 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1483 571 276 63 23 chr11 117748774 117748948 -4094908 + B3 SINE B2 30 210 -6 5 1483 1004 92 50 0 chr11 117748972 117749113 -4094743 + B1_Mus1 SINE Alu 1 148 0 5 1483 1374 71 16 5 chr11 117749125 117749309 -4094547 + B2_Mm2 SINE B2 1 186 -9 5 1483 359 258 150 24 chr11 117749321 117749448 -4094408 + B1_Mur1 SINE Alu 1 143 -6 5 1483 206 62 0 30 chr11 117751833 117751866 -4091990 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 5 1483 332 337 0 0 chr11 117753834 117753926 -4089930 - ID_B1 SINE B4 -37 187 96 5 1483 632 291 59 64 chr11 117753947 117754167 -4089689 + ID_B1 SINE B4 2 220 -4 5 1483 1133 36 65 0 chr11 117754432 117754570 -4089286 + B1_Mm SINE Alu 1 147 0 5 1483 607 253 30 37 chr11 117754623 117754787 -4089069 - RSINE1 SINE B4 0 165 3 5 1483 861 182 0 39 chr11 117754834 117754988 -4088868 - B1_Mur3 SINE Alu -1 148 1 5 1483 1493 220 71 23 chr11 117755022 117755375 -4088481 - ORR1D2 LTR MaLR 0 370 1 5 1483 320 260 140 44 chr11 117755493 117755651 -4088205 - L1MB2 LINE L1 0 6171 5998 5 1483 610 275 153 0 chr11 117755728 117755917 -4087939 + ID_B1 SINE B4 7 224 0 5 1483 596 208 257 18 chr11 117755952 117756123 -4087733 - B3 SINE B2 0 216 5 5 1483 431 256 71 28 chr11 117756413 117756554 -4087302 - B1F1 SINE Alu -2 147 1 5 1483 908 216 38 0 chr11 117756554 117756631 -4087225 - ID SINE ID -139 85 2 5 1483 180 111 0 0 chr11 117756639 117756666 -4087190 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 5 1483 500 250 48 95 chr11 117756699 117756867 -4086989 - RSINE1 SINE B4 0 165 6 5 1483 395 176 47 17 chr11 117757720 117757957 -4085899 + CT-rich Low_complexity Low_complexity 1 244 0 5 1483 375 316 0 0 chr11 117758313 117758490 -4085366 + (CACCC)n Simple_repeat Simple_repeat 3 179 0 5 1483 358 311 0 0 chr11 117758553 117758730 -4085126 + (CACCC)n Simple_repeat Simple_repeat 3 179 0 5 1483 2515 49 2 264 chr11 117758737 117759263 -4084593 - RLTR10 LTR ERVK -2 388 1 5 1483 8138 20 0 0 chr11 117759263 117760260 -4083596 - RLTR10-int LTR ERVK -1 1986 990 5 1483 356 289 15 15 chr11 117760342 117760479 -4083377 - RLTR10-int LTR ERVK -5987 1594 1458 5 1483 7287 50 7 7 chr11 117760536 117761532 -4082324 - RLTR10-int LTR ERVK -989 998 3 5 1483 2515 49 2 264 chr11 117761536 117762062 -4081794 - RLTR10 LTR ERVK -2 388 1 5 1483 371 316 0 0 chr11 117762097 117762423 -4081433 + (CACCC)n Simple_repeat Simple_repeat 1 326 0 5 1483 281 194 137 14 chr11 117762642 117762715 -4081141 + B3A SINE B2 1 82 -116 5 1483 240 286 78 0 chr11 117762796 117762873 -4080983 + B4A SINE B4 210 292 0 5 1483 234 62 0 0 chr11 117763138 117763170 -4080686 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 5 1483 1216 74 112 17 chr11 117763346 117763524 -4080332 + B2_Mm2 SINE B2 1 195 0 5 1483 856 151 0 28 chr11 117765005 117765223 -4078633 + (CACCAT)n Simple_repeat Simple_repeat 1 211 0 5 1483 301 332 76 67 chr11 117765447 117765670 -4078186 + B4 SINE B4 7 231 -61 5 1483 337 277 0 21 chr11 117765854 117765950 -4077906 + PB1D10 SINE Alu 13 106 -11 5 1483 549 268 16 0 chr11 117766197 117766320 -4077536 - ID_B1 SINE B4 -4 220 96 5 1483 543 263 17 0 chr11 117766553 117766671 -4077185 + PB1D9 SINE Alu 1 120 0 5 1483 239 353 49 0 chr11 117766706 117766808 -4077048 - B4A SINE B4 0 292 186 5 1483 233 282 0 49 chr11 117766990 117767072 -4076784 - PB1D10 SINE Alu 0 117 40 6 1483 339 229 141 78 chr11 117767194 117767322 -4076534 + MTC LTR MaLR 8 143 -276 6 1483 1041 146 6 10 chr11 117767524 117767724 -4076132 + MTC LTR MaLR 116 323 -98 6 1483 309 325 0 147 chr11 117767745 117767830 -4076026 + B4 SINE B4 126 199 -93 6 1483 1187 74 0 0 chr11 117767830 117767978 -4075878 - B1_Mus1 SINE Alu 0 148 1 6 1483 309 325 0 147 chr11 117767978 117768083 -4075773 + B4 SINE B4 200 288 -4 6 1483 21 36 0 0 chr11 117769088 117769116 -4074740 + AT_rich Low_complexity Low_complexity 1 28 0 6 1483 192 184 0 0 chr11 117769116 117769165 -4074691 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1483 477 47 0 0 chr11 117769230 117769294 -4074562 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1483 25 0 0 0 chr11 117769335 117769360 -4074496 + AT_rich Low_complexity Low_complexity 1 25 0 6 1483 674 171 0 39 chr11 117769365 117769493 -4074363 - B1_Mur4 SINE Alu -1 149 27 6 1483 1258 48 0 0 chr11 117769520 117769667 -4074189 + B1_Mm SINE Alu 1 147 0 6 1483 863 142 14 21 chr11 117769746 117769890 -4073966 + B1_Mus2 SINE Alu 5 147 0 6 1483 1305 27 0 0 chr11 117769961 117770108 -4073748 + B1_Mm SINE Alu 1 147 0 6 1483 358 0 0 0 chr11 117770171 117770218 -4073638 - B1_Mm SINE Alu -1 146 100 6 1483 375 181 0 0 chr11 117770259 117770331 -4073525 + (CCA)n Simple_repeat Simple_repeat 1 72 0 6 1483 346 315 35 23 chr11 117770665 117770837 -4073019 + L1MB8 LINE L1 5948 6121 -57 6 1483 189 0 0 0 chr11 117771480 117771501 -4072355 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 6 1483 227 325 38 0 chr11 117771501 117771581 -4072275 + RMER15 LTR ERVL 425 507 -68 6 1483 1640 42 0 0 chr11 117771761 117771953 -4071903 + B2_Mm1a SINE B2 2 193 0 6 1483 515 194 87 0 chr11 117772043 117772146 -4071710 + PB1D10 SINE Alu 3 114 -3 6 1483 379 256 0 11 chr11 117772160 117772247 -4071609 + PB1D10 SINE Alu 32 117 0 6 1483 215 277 62 0 chr11 117772250 117772315 -4071541 + ID4 SINE ID 2 70 -13 6 1483 727 164 47 0 chr11 117772894 117773022 -4070834 + B1_Mus2 SINE Alu 6 139 -8 6 1483 710 264 27 48 chr11 117773029 117773216 -4070640 + ID_B1 SINE B4 1 183 -41 6 1483 230 208 26 129 chr11 117773269 117773385 -4070471 + MT2B LTR ERVL 154 257 -344 6 1483 543 224 16 8 chr11 117773292 117773418 -4070438 + B1F SINE Alu 12 138 -11 6 1483 413 246 8 106 chr11 117773435 117773567 -4070289 + B1F1 SINE Alu 1 148 -1 6 1483 933 33 8 0 chr11 117773703 117773825 -4070031 + B1_Mm SINE Alu 10 132 -15 6 1483 1120 63 14 0 chr11 117775122 117775265 -4068591 - B1_Mus2 SINE Alu -1 146 2 6 1483 243 0 0 0 chr11 117776205 117776232 -4067624 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1483 350 194 20 7 chr11 117776258 117776374 -4067482 + B1_Mur4 SINE Alu 1 144 -6 6 1483 288 0 0 0 chr11 117776378 117776410 -4067446 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1483 593 200 8 31 chr11 117776429 117776558 -4067298 - B3A SINE B2 -42 156 31 6 1483 1297 111 21 0 chr11 117776558 117776747 -4067109 - B2_Mm2 SINE B2 -1 194 2 6 1483 1084 239 10 10 chr11 117776770 117776977 -4066879 - B3 SINE B2 -7 209 3 6 1483 448 288 48 15 chr11 117777132 117777320 -4066536 - MTEa LTR MaLR 0 379 180 6 1483 192 209 23 0 chr11 117777364 117777407 -4066449 - L2a LINE L2 -273 3153 3110 6 1483 1042 219 58 38 chr11 117777508 117777701 -4066155 + MTD LTR MaLR 153 341 -78 6 1483 225 0 0 0 chr11 117777701 117777726 -4066130 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 6 1483 1013 219 58 38 chr11 117777726 117777793 -4066063 + MTD LTR MaLR 342 417 -2 6 1483 397 244 33 0 chr11 117778789 117778879 -4064977 + B4 SINE B4 1 93 -199 6 1483 380 231 19 87 chr11 117778929 117779033 -4064823 + B1_Mur4 SINE Alu 45 141 -9 6 1483 543 247 23 58 chr11 117779057 117779090 -4064766 + B3A SINE B2 27 59 -139 6 1483 180 0 0 0 chr11 117779090 117779110 -4064746 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 6 1483 543 247 23 58 chr11 117779110 117779248 -4064608 + B3A SINE B2 60 191 -7 6 1483 460 204 111 0 chr11 117779265 117779373 -4064483 + B4 SINE B4 89 208 -84 6 1483 383 328 16 0 chr11 117779399 117779527 -4064329 + RSINE1 SINE B4 1 130 -35 6 1483 372 252 53 47 chr11 117779780 117779930 -4063926 + B4A SINE B4 102 252 -40 6 1483 519 95 0 0 chr11 117780240 117780314 -4063542 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1483 329 259 141 11 chr11 117780713 117780830 -4063026 - B1F SINE Alu -17 132 14 6 1483 1182 71 6 12 chr11 117781247 117781418 -4062438 + B2_Mm1t SINE B2 2 171 -22 6 1483 803 65 17 0 chr11 117781419 117781547 -4062309 + B1_Mm SINE Alu 2 146 -2 6 1483 252 0 0 0 chr11 117781547 117781575 -4062281 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 6 1483 215 171 24 0 chr11 117781601 117781642 -4062214 + B4 SINE B4 41 82 -210 6 1483 400 83 0 5 chr11 117781606 117781671 -4062185 + B2_Mm2 SINE B2 47 109 -107 6 1483 21 0 0 0 chr11 117781683 117781704 -4062152 + AT_rich Low_complexity Low_complexity 1 21 0 6 1483 536 270 133 0 chr11 117781749 117781945 -4061911 - ID_B1 SINE B4 -2 222 1 6 1483 727 170 52 19 chr11 117782000 117782193 -4061663 - B3 SINE B2 0 195 7 6 1483 210 172 190 0 chr11 117782263 117782321 -4061535 + B1_Mur3 SINE Alu 81 149 0 6 1483 2196 171 112 57 chr11 117782455 117783184 -4060672 + RMER13B LTR ERVK 1 763 -97 6 1483 261 240 119 10 chr11 117783887 117783988 -4059868 - PB1D9 SINE Alu -7 113 2 6 1483 267 103 0 0 chr11 117785052 117785091 -4058765 + (TTGTG)n Simple_repeat Simple_repeat 1 39 0 6 1483 1365 55 21 42 chr11 117785513 117785704 -4058152 - B2_Mm2 SINE B2 -8 187 1 6 1483 1232 48 0 7 chr11 117785720 117785867 -4057989 - B1_Mus1 SINE Alu -1 147 2 6 1483 554 266 55 31 chr11 117785901 117786064 -4057792 + ID_B1 SINE B4 13 179 -45 6 1483 580 305 95 72 chr11 117787036 117787425 -4056431 - MLT1K LTR MaLR -35 560 163 6 1483 367 237 95 17 chr11 117787560 117787676 -4056180 + RSINE1 SINE B4 4 128 -37 6 1483 256 320 70 31 chr11 117787676 117787689 -4056167 + B2_Mm1a SINE B2 3 136 -57 6 1483 22 35 0 0 chr11 117787712 117787741 -4056115 + AT_rich Low_complexity Low_complexity 1 29 0 6 1483 441 0 0 0 chr11 117787894 117787943 -4055913 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1483 547 156 188 22 chr11 117788697 117788835 -4055021 + MTC LTR MaLR 1 161 -260 6 1483 1229 191 78 50 chr11 117788875 117789156 -4054700 + MTC LTR MaLR 125 413 -8 6 1483 1054 243 18 166 chr11 117789185 117789200 -4054656 + MTE2a LTR MaLR 3 16 -363 6 1483 1280 41 0 0 chr11 117789200 117789347 -4054509 - B1_Mm SINE Alu 0 147 1 6 1483 1054 243 18 166 chr11 117789347 117789765 -4054091 + MTE2a LTR MaLR 17 372 -7 6 1483 443 245 19 47 chr11 117789765 117789872 -4053984 - PB1D10 SINE Alu -11 106 3 6 1483 248 231 0 44 chr11 117789876 117789900 -4053956 + T-rich Low_complexity Low_complexity 42 65 0 6 1483 1194 75 0 0 chr11 117789900 117790047 -4053809 - B1_Mus1 SINE Alu 0 148 2 6 1483 248 231 0 44 chr11 117790047 117790090 -4053766 + T-rich Low_complexity Low_complexity 1 41 0 6 1483 399 330 91 15 chr11 117790277 117790474 -4053382 - ID_B1 SINE B4 -10 214 3 6 1483 203 61 30 0 chr11 117790978 117791011 -4052845 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 6 1483 287 0 53 0 chr11 117791365 117791403 -4052453 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1483 279 0 0 0 chr11 117791725 117791756 -4052100 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1483 428 230 0 48 chr11 117791761 117791866 -4051990 - PB1D10 SINE Alu -5 112 13 6 1483 387 0 0 0 chr11 117792747 117792790 -4051066 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 6 1483 230 300 0 0 chr11 117793424 117793494 -4050362 - L2a LINE L2 -2 3424 3355 6 1483 294 264 7 79 chr11 117793878 117794081 -4049775 + CT-rich Low_complexity Low_complexity 1 188 0 6 1483 429 20 0 0 chr11 117795021 117795071 -4048785 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1483 238 287 74 81 chr11 117795162 117795310 -4048546 + RMER12 LTR ERVK 720 866 -456 6 1483 233 286 0 0 chr11 117797071 117797127 -4046729 - Cheshire DNA MER1_type 0 2420 2365 6 1483 418 223 31 31 chr11 117797179 117797276 -4046580 - Cheshire DNA MER1_type -2248 172 76 6 1483 597 306 108 0 chr11 117797276 117797462 -4046394 + ID_B1 SINE B4 3 208 -16 6 1483 1927 168 96 34 chr11 117798092 117798510 -4045346 - RMER4A LTR ERVK 0 466 23 6 1483 1281 42 0 12 chr11 117798511 117798669 -4045187 + B2_Mm1a SINE B2 1 158 -35 6 1483 387 0 0 0 chr11 117798669 117798712 -4045144 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 6 1483 203 125 0 24 chr11 117799860 117799901 -4043955 + (CGGGGG)n Simple_repeat Simple_repeat 3 42 0 6 1483 362 272 37 31 chr11 117799954 117800117 -4043739 + GA-rich Low_complexity Low_complexity 3 166 0 6 1483 706 192 77 0 chr11 117800157 117800287 -4043569 + B1_Mus1 SINE Alu 2 141 -7 6 1483 1189 102 97 0 chr11 117800287 117800463 -4043393 - B2_Mm2 SINE B2 -1 194 2 6 1483 620 97 38 28 chr11 117800558 117800664 -4043192 - B2_Mm2 SINE B2 -88 107 1 6 1483 597 194 0 95 chr11 117800749 117800886 -4042970 + B1_Mur2 SINE Alu 25 148 -1 6 1483 308 127 18 0 chr11 117800891 117800946 -4042910 + (GGAAA)n Simple_repeat Simple_repeat 4 59 0 6 1483 235 264 159 11 chr11 117801554 117801642 -4042214 + MIRb SINE MIR 74 174 -94 6 1483 486 214 35 0 chr11 117802612 117802624 -4041232 - ID_B1 SINE B4 -74 218 147 6 1483 407 269 10 0 chr11 117802624 117802728 -4041128 - PB1D10 SINE Alu -8 109 5 6 1483 418 263 100 17 chr11 117803590 117803710 -4040146 + ID_B1 SINE B4 78 207 -17 6 1483 492 105 0 0 chr11 117803710 117803786 -4040070 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1483 886 223 88 5 chr11 117803797 117804013 -4039843 + B4A SINE B4 1 234 -58 7 1483 455 284 0 41 chr11 117804228 117804349 -4039507 + PB1D7 SINE Alu 5 120 0 7 1483 1063 178 62 5 chr11 117804369 117804561 -4039295 + B3 SINE B2 1 203 -13 7 1483 1182 75 7 0 chr11 117804592 117804739 -4039117 + B1_Mus1 SINE Alu 1 148 0 7 1483 183 42 0 0 chr11 117804742 117804766 -4039090 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1483 660 111 0 0 chr11 117804989 117805088 -4038768 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 7 1483 1457 79 21 0 chr11 117805088 117805278 -4038578 - B2_Mm2 SINE B2 0 195 2 7 1483 266 0 29 0 chr11 117805319 117805353 -4038503 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1483 1379 65 21 5 chr11 117805353 117805531 -4038325 - B2_Mm1t SINE B2 -10 183 2 7 1483 239 204 0 0 chr11 117805542 117805591 -4038265 + PB1D9 SINE Alu 24 72 -48 7 1483 486 0 0 0 chr11 117805600 117805654 -4038202 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 7 1483 219 271 23 8 chr11 117806134 117806264 -4037592 + CT-rich Low_complexity Low_complexity 4 135 0 7 1483 252 0 0 0 chr11 117806471 117806499 -4037357 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1483 470 273 185 8 chr11 117806901 117807113 -4036743 + ID_B1 SINE B4 1 245 -47 7 1483 535 200 49 48 chr11 117807144 117807291 -4036565 + B1_Mur4 SINE Alu 1 149 -1 7 1483 338 272 88 0 chr11 117807315 117807440 -4036416 + B1F2 SINE Alu 14 149 0 7 1483 204 156 22 0 chr11 117807446 117807491 -4036365 + A-rich Low_complexity Low_complexity 1 46 0 7 1483 472 209 12 25 chr11 117808705 117808736 -4035120 + polypyrimidine Low_complexity Low_complexity 129 160 0 7 1483 1460 23 0 6 chr11 117808736 117808913 -4034943 + (TTC)n Simple_repeat Simple_repeat 1 176 0 7 1483 472 209 12 25 chr11 117808913 117809043 -4034813 + CT-rich Low_complexity Low_complexity 2 128 0 7 1483 509 310 85 10 chr11 117809120 117809319 -4034537 - ID_B1 SINE B4 -3 221 8 7 1483 369 267 39 29 chr11 117809391 117809495 -4034361 + B3 SINE B2 60 164 -52 7 1483 393 22 0 0 chr11 117809498 117809544 -4034312 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1483 1697 16 0 30 chr11 117809559 117809758 -4034098 + B2_Mm1a SINE B2 1 193 0 7 1483 814 219 106 29 chr11 117809918 117810125 -4033731 + ID_B1 SINE B4 2 224 0 7 1483 563 143 2 11 chr11 117810155 117810260 -4033596 - B1_Mur4 SINE Alu -22 128 22 7 1483 198 0 0 0 chr11 117810666 117810688 -4033168 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1483 508 208 47 16 chr11 117811430 117811557 -4032299 + ID_B1 SINE B4 93 223 -1 7 1483 628 165 139 16 chr11 117811563 117811692 -4032164 + B1_Mur2 SINE Alu 5 149 0 7 1483 325 290 62 39 chr11 117811692 117811821 -4032035 + RSINE1 SINE B4 1 132 -33 7 1483 1176 37 0 0 chr11 117811907 117812041 -4031815 + B1_Mus2 SINE Alu 2 135 -12 7 1483 446 100 29 0 chr11 117812043 117812113 -4031743 - B1_Mus2 SINE Alu -75 72 1 7 1483 633 258 106 11 chr11 117812147 117812335 -4031521 + B3 SINE B2 3 208 -8 7 1483 312 127 0 0 chr11 117814037 117814092 -4029764 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1483 1014 147 118 26 chr11 117814158 117814353 -4029503 - B3 SINE B2 0 216 4 7 1483 349 306 27 151 chr11 117814356 117814575 -4029281 - B4 SINE B4 -62 230 39 7 1483 455 213 75 0 chr11 117814642 117814736 -4029120 - B3 SINE B2 -115 101 1 7 1483 1233 54 0 0 chr11 117814766 117814914 -4028942 + B1_Mus1 SINE Alu 1 148 0 7 1483 560 149 223 0 chr11 117814932 117815053 -4028803 + B1_Mur3 SINE Alu 1 148 -1 7 1483 754 156 181 67 chr11 117815075 117815268 -4028588 - B3 SINE B2 0 216 2 7 1483 21 0 0 0 chr11 117815290 117815311 -4028545 + GC_rich Low_complexity Low_complexity 1 21 0 7 1483 180 0 0 0 chr11 117815824 117815844 -4028012 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1483 231 167 0 0 chr11 117816118 117816160 -4027696 + GA-rich Low_complexity Low_complexity 2 43 0 7 1483 988 222 45 18 chr11 117816416 117816636 -4027220 + B4A SINE B4 2 227 -65 7 1483 669 272 27 0 chr11 117816644 117816791 -4027065 + RSINE1 SINE B4 2 152 -13 7 1483 289 239 56 0 chr11 117816813 117816884 -4026972 + B4A SINE B4 216 290 -2 7 1483 638 209 36 7 chr11 117817720 117817860 -4025996 + B1F SINE Alu 5 148 -1 7 1483 274 224 139 12 chr11 117817881 117817967 -4025889 + PB1D7 SINE Alu 10 106 -14 7 1483 346 245 75 9 chr11 117817896 117818003 -4025853 + ID_B1 SINE B4 111 224 0 7 1483 588 248 0 0 chr11 117818015 117818140 -4025716 + B1_Mur2 SINE Alu 11 135 -14 7 1483 273 245 0 0 chr11 117818142 117818191 -4025665 + G-rich Low_complexity Low_complexity 1 49 0 7 1483 870 153 11 11 chr11 117818192 117818370 -4025486 + GA-rich Low_complexity Low_complexity 3 180 0 7 1483 220 279 38 12 chr11 117818383 117818463 -4025393 + MIR SINE MIR 159 240 -22 7 1483 666 0 0 0 chr11 117818695 117818769 -4025087 + (ATGTG)n Simple_repeat Simple_repeat 1 74 0 7 1483 189 0 0 0 chr11 117818769 117818790 -4025066 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1483 434 129 294 0 chr11 117818864 117818949 -4024907 - B1_Mur1 SINE Alu -21 128 19 7 1483 547 254 65 7 chr11 117818980 117819119 -4024737 - B1_Mur2 SINE Alu -2 147 1 7 1483 866 267 15 0 chr11 117819146 117819348 -4024508 - B4A SINE B4 -83 209 5 7 1483 252 272 0 16 chr11 117820638 117820707 -4023149 - ID4_ SINE ID -14 69 2 7 1483 472 204 10 10 chr11 117820711 117820810 -4023046 - PB1D10 SINE Alu -1 116 18 7 1483 180 0 0 0 chr11 117820836 117820856 -4023000 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1483 474 61 0 0 chr11 117821631 117821697 -4022159 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1483 305 322 46 0 chr11 117821947 117822034 -4021822 + ID_B1 SINE B4 33 123 -101 7 1483 604 248 154 29 chr11 117822120 117822328 -4021528 + B4A SINE B4 1 234 -58 7 1483 301 262 0 81 chr11 117822352 117822439 -4021417 + RSINE1 SINE B4 86 165 0 7 1483 795 171 93 0 chr11 117822491 117822620 -4021236 - B1_Mus1 SINE Alu -6 142 2 7 1483 957 129 14 0 chr11 117822647 117822786 -4021070 + B1_Mus2 SINE Alu 1 141 -6 7 1483 513 254 76 0 chr11 117822889 117823007 -4020849 - B1_Mur4 SINE Alu -1 149 23 7 1483 232 161 0 152 chr11 117822950 117823016 -4020840 - MT2B LTR ERVL -368 233 178 7 1483 1156 83 0 0 chr11 117823016 117823160 -4020696 + B1_Mus2 SINE Alu 2 145 -2 7 1483 595 259 28 7 chr11 117823279 117823423 -4020433 + RSINE1 SINE B4 7 153 -12 7 1483 312 354 6 79 chr11 117824375 117824553 -4019303 + L2a LINE L2 3257 3421 -5 7 1483 182 262 34 93 chr11 117827276 117827394 -4016462 - MIR3 SINE MIR 0 208 98 7 1483 214 173 57 19 chr11 117832012 117832065 -4011791 + MIRc SINE MIR 97 151 -117 7 1483 188 204 45 0 chr11 117832360 117832404 -4011452 + MIRc SINE MIR 200 245 -23 7 1483 187 277 30 15 chr11 117832418 117832484 -4011372 - L2b LINE L2 0 3375 3309 7 1483 360 329 71 77 chr11 117832605 117832773 -4011083 + B3A SINE B2 1 167 -31 7 1483 207 100 0 0 chr11 117832777 117832807 -4011049 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1483 345 198 24 47 chr11 117832817 117832902 -4010954 + MT2B LTR ERVL 156 238 -363 7 1483 239 286 89 25 chr11 117832835 117832914 -4010942 + B1F1 SINE Alu 10 93 -56 7 1483 1224 54 0 0 chr11 117832936 117833083 -4010773 + B1_Mm SINE Alu 1 147 0 7 1483 180 0 0 0 chr11 117833083 117833103 -4010753 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1483 207 0 0 0 chr11 117833168 117833191 -4010665 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1483 321 267 0 0 chr11 117833514 117833589 -4010267 + ID SINE ID 1 75 -149 7 185 586 279 0 0 chr11 117833598 117833738 -4010118 - B1_Mus2 SINE Alu -7 140 1 7 1484 535 260 31 0 chr11 117834160 117834287 -4009569 + ID_B1 SINE B4 94 224 0 7 1484 1091 216 48 10 chr11 117834319 117834525 -4009331 + B3 SINE B2 1 214 -2 7 1484 180 0 0 0 chr11 117836273 117836293 -4007563 + (CAGG)n Simple_repeat Simple_repeat 4 23 0 7 1484 189 74 0 0 chr11 117836710 117836737 -4007119 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1484 500 298 47 16 chr11 117838046 117838256 -4005600 - B3A SINE B2 -5 211 1 7 1484 311 209 0 56 chr11 117838292 117838363 -4005493 - B1_Mus2 SINE Alu -80 67 1 7 1484 396 209 109 45 chr11 117838570 117838680 -4005176 + PB1D10 SINE Alu 1 117 0 7 1484 342 226 4 8 chr11 117838689 117838934 -4004922 + (TG)n Simple_repeat Simple_repeat 1 243 0 7 1484 584 224 134 38 chr11 117838942 117838996 -4004860 + ID_B1 SINE B4 21 222 0 7 1484 990 46 0 0 chr11 117838996 117839126 -4004730 + B1_Mm SINE Alu 18 147 0 7 1484 411 73 0 0 chr11 117839128 117839183 -4004673 + (A)n Simple_repeat Simple_repeat 1 55 0 7 1484 382 275 32 48 chr11 117839772 117839898 -4003958 + RSINE1 SINE B4 2 125 -40 7 1484 238 239 14 29 chr11 117839974 117840043 -4003813 + GA-rich Low_complexity Low_complexity 1 68 0 7 1484 399 21 0 0 chr11 117840184 117840232 -4003624 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1484 237 299 46 0 chr11 117840239 117840268 -4003588 + B1F1 SINE Alu 3 92 -56 7 1484 300 228 18 0 chr11 117840268 117840325 -4003531 + ID_B1 SINE B4 142 199 -25 7 1484 344 265 80 68 chr11 117841312 117841474 -4002382 - RSINE1 SINE B4 0 165 2 7 1484 1478 78 21 5 chr11 117841530 117841722 -4002134 + B2_Mm2 SINE B2 1 195 0 7 1484 297 123 30 15 chr11 117841722 117841788 -4002068 + GA-rich Low_complexity Low_complexity 1 67 0 8 1484 902 40 186 0 chr11 117841989 117842113 -4001743 + B1_Mus1 SINE Alu 1 147 -1 8 1484 598 273 114 20 chr11 117842174 117842376 -4001480 - ID_B1 SINE B4 -2 222 2 8 1484 24 32 0 0 chr11 117842381 117842412 -4001444 + AT_rich Low_complexity Low_complexity 1 31 0 8 1484 442 248 103 26 chr11 117842436 117842552 -4001304 - B3 SINE B2 -90 126 2 8 1484 714 339 45 15 chr11 117842561 117842896 -4000960 - RMER5 LTR ERV1 -133 401 57 8 1484 1263 34 0 0 chr11 117842905 117843051 -4000805 - B1_Mus2 SINE Alu 0 147 2 8 1484 298 330 9 64 chr11 117843154 117843264 -4000592 - PB1D7 SINE Alu -16 104 1 8 1484 186 43 0 0 chr11 117843390 117843413 -4000443 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 1484 180 0 0 0 chr11 117843413 117843432 -4000424 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1484 1109 67 0 0 chr11 117843432 117843567 -4000289 - B1_Mus1 SINE Alu -13 135 1 8 1484 520 281 7 7 chr11 117843574 117843710 -4000146 - B1_Mur1 SINE Alu 0 149 14 8 1484 477 288 49 59 chr11 117843710 117843775 -4000081 - ID_B1 SINE B4 0 222 24 8 1484 372 22 0 0 chr11 117844354 117844399 -3999457 + (TATG)n Simple_repeat Simple_repeat 2 46 0 8 1484 1080 97 0 14 chr11 117844399 117844541 -3999315 - B1_Mus1 SINE Alu -2 146 6 8 1484 743 244 27 11 chr11 117844640 117844826 -3999030 + B3 SINE B2 15 203 -13 8 1484 279 0 0 0 chr11 117844826 117844857 -3998999 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1484 796 154 0 35 chr11 117844871 117845012 -3998844 - B1_Mus2 SINE Alu -8 139 4 8 1484 844 161 7 65 chr11 117845522 117845675 -3998181 - B1_Mur2 SINE Alu -1 148 5 8 1484 357 24 0 0 chr11 117845688 117845730 -3998126 + (TC)n Simple_repeat Simple_repeat 2 43 0 8 1484 282 260 84 28 chr11 117845731 117845838 -3998018 - B1F1 SINE Alu -8 141 29 8 1484 573 114 8 50 chr11 117845842 117845889 -3997967 + polypyrimidine Low_complexity Low_complexity 74 117 0 8 1484 1258 34 7 0 chr11 117845889 117846035 -3997821 - B1_Mm SINE Alu 0 147 1 8 1484 573 114 8 50 chr11 117846035 117846107 -3997749 + polypyrimidine Low_complexity Low_complexity 3 73 0 8 1484 1475 59 5 5 chr11 117846239 117846425 -3997431 + B2_Mm1t SINE B2 1 186 -7 8 1484 268 221 114 25 chr11 117846447 117846526 -3997330 - RSINE1 SINE B4 0 165 80 8 1484 27 0 0 0 chr11 117846549 117846576 -3997280 + AT_rich Low_complexity Low_complexity 1 27 0 8 1484 594 227 76 0 chr11 117846617 117846749 -3997107 - RSINE1 SINE B4 -22 143 2 8 1484 782 159 0 22 chr11 117846870 117847005 -3996851 - B1_Mur4 SINE Alu 0 150 19 8 1484 225 0 0 0 chr11 117847005 117847030 -3996826 + (CCA)n Simple_repeat Simple_repeat 2 26 0 8 1484 356 281 12 0 chr11 117848902 117848984 -3994872 - ID4 SINE ID 0 83 1 8 1484 22 35 0 0 chr11 117848995 117849024 -3994832 + AT_rich Low_complexity Low_complexity 1 29 0 8 1484 302 261 43 0 chr11 117849049 117849118 -3994738 - RSINE1 SINE B4 -60 105 34 8 1484 321 326 68 0 chr11 117849133 117849265 -3994591 - ID_B1 SINE B4 -4 220 80 8 1484 470 331 71 31 chr11 117849763 117849959 -3993897 - ID_B1 SINE B4 -14 210 7 8 1484 349 238 0 0 chr11 117849982 117850062 -3993794 - PB1D10 SINE Alu -24 93 14 8 1484 21 0 0 0 chr11 117850207 117850228 -3993628 + AT_rich Low_complexity Low_complexity 1 21 0 8 1484 705 176 41 27 chr11 117850230 117850376 -3993480 - B1_Mur1 SINE Alu 0 149 2 8 1484 562 266 133 44 chr11 117850383 117850564 -3993292 - B3A SINE B2 0 198 2 8 1484 362 191 15 0 chr11 117850569 117850637 -3993219 - B1_Mur2 SINE Alu -3 146 78 8 1484 310 235 24 24 chr11 117850664 117850747 -3993109 - ID_B1 SINE B4 0 224 142 8 1484 391 299 65 0 chr11 117850811 117850918 -3992938 - PB1D10 SINE Alu -3 114 1 8 1484 261 196 0 0 chr11 117852598 117852649 -3991207 - ID_B1 SINE B4 -1 223 173 8 1484 246 214 65 43 chr11 117852604 117852711 -3991145 - PB1D9 SINE Alu -7 113 1 8 1484 312 262 25 12 chr11 117852729 117852810 -3991046 - ID4_ SINE ID 0 83 2 8 1484 198 0 0 0 chr11 117855163 117855185 -3988671 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1484 479 178 11 11 chr11 117855209 117855300 -3988556 - RSINE1 SINE B4 -52 113 23 8 1484 377 220 89 9 chr11 117857411 117857549 -3986307 - B3A SINE B2 -41 157 7 8 1484 1551 223 65 53 chr11 117857595 117858026 -3985830 - Lx8 LINE L1 -324 7149 6714 8 1484 453 36 0 0 chr11 117858034 117858089 -3985767 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 8 1484 1095 276 77 6 chr11 117858089 117858428 -3985428 - Lx8 LINE L1 -806 6667 6305 8 1484 189 0 0 0 chr11 117858457 117858478 -3985378 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1484 189 0 0 0 chr11 117859327 117859348 -3984508 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1484 1302 20 0 0 chr11 117859348 117859494 -3984362 - B1_Mus2 SINE Alu 0 147 2 8 1484 387 0 0 0 chr11 117860633 117860676 -3983180 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1484 767 278 84 29 chr11 117860906 117861180 -3982676 + B4 SINE B4 1 289 -3 8 1484 279 113 0 0 chr11 117861231 117861284 -3982572 + (CTCA)n Simple_repeat Simple_repeat 2 54 0 8 1484 576 0 0 0 chr11 117861692 117861756 -3982100 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1484 1676 16 16 0 chr11 117864086 117864276 -3979580 - B2_Mm1a SINE B2 0 193 1 8 1484 319 186 115 67 chr11 117866561 117866665 -3977191 - PB1D10 SINE Alu -3 114 6 8 1484 246 225 57 0 chr11 117867752 117867826 -3976030 - ID4_ SINE ID -62 90 15 8 1484 233 270 26 26 chr11 117867767 117867843 -3976013 - ID SINE ID -146 78 3 8 1484 571 232 35 14 chr11 117868222 117868366 -3975490 - B1_Mur1 SINE Alu -2 147 1 8 1484 249 33 0 0 chr11 117868579 117868609 -3975247 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 8 1484 189 0 0 0 chr11 117868669 117868690 -3975166 + (C)n Simple_repeat Simple_repeat 1 21 0 8 1484 198 0 0 0 chr11 117869226 117869248 -3974608 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1484 266 247 212 20 chr11 117869499 117869598 -3974258 - ID_B1 SINE B4 -3 221 104 8 1484 828 188 151 0 chr11 117872018 117872204 -3971652 - B3 SINE B2 0 216 3 8 1484 590 239 0 8 chr11 117872652 117872770 -3971086 - PB1D7 SINE Alu -1 119 3 8 1484 320 219 0 52 chr11 117873444 117873521 -3970335 - ID_B1 SINE B4 -15 209 137 8 1484 385 252 107 9 chr11 117873528 117873640 -3970216 - B1F SINE Alu -26 123 1 8 1484 426 336 7 28 chr11 117873731 117873875 -3969981 + RSINE1 SINE B4 8 148 -17 8 1484 322 174 284 47 chr11 117873886 117874013 -3969843 - ID_B1 SINE B4 -63 161 5 8 1484 226 297 138 26 chr11 117876090 117876242 -3967614 + MLT1H1 LTR MaLR 100 268 -287 8 1484 243 314 0 14 chr11 117876575 117876646 -3967210 - RSINE1 SINE B4 -5 160 91 8 1484 431 273 89 74 chr11 117878168 117878195 -3965661 - B4 SINE B4 -44 248 173 8 1484 968 76 0 0 chr11 117878195 117878327 -3965529 - B1_Mus1 SINE Alu -4 144 13 8 1484 431 273 89 74 chr11 117878327 117878370 -3965486 - B4 SINE B4 -44 172 44 8 1484 588 29 0 0 chr11 117878392 117878462 -3965394 + (TCC)n Simple_repeat Simple_repeat 1 70 0 8 1484 3039 53 60 11 chr11 117878679 117879060 -3964796 - MTB LTR MaLR 0 400 1 8 1484 468 128 0 0 chr11 117879229 117879307 -3964549 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1484 212 165 412 0 chr11 117879309 117879394 -3964462 - RSINE1 SINE B4 -21 144 25 8 1484 549 241 112 24 chr11 117879730 117879900 -3963956 + B3A SINE B2 5 189 -9 8 1484 460 278 0 9 chr11 117879911 117880020 -3963836 + PB1D10 SINE Alu 1 108 -9 8 1484 293 270 0 63 chr11 117880040 117880119 -3963737 + ID4_ SINE ID 5 78 -5 8 1484 625 189 38 0 chr11 117881731 117881837 -3962019 - PB1D9 SINE Alu -9 111 2 8 1484 686 181 17 0 chr11 117881871 117882013 -3961843 + B1_Mur4 SINE Alu 1 150 0 8 1484 261 304 119 25 chr11 117882216 117882229 -3961627 - ID_B1 SINE B4 -97 195 146 8 1484 394 284 0 0 chr11 117882229 117882317 -3961539 - B1F SINE Alu -61 88 1 8 1484 261 304 119 25 chr11 117882317 117882334 -3961522 - ID_B1 SINE B4 -97 145 67 8 1484 1024 38 0 0 chr11 117882389 117882520 -3961336 - B1_Mus2 SINE Alu -8 139 9 8 1484 377 276 0 28 chr11 117887362 117887470 -3956386 - ID_B1 SINE B4 -24 200 96 8 1484 439 209 37 28 chr11 117887375 117887483 -3956373 - PB1D10 SINE Alu -40 109 1 8 1484 204 67 0 0 chr11 117888406 117888436 -3955420 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1484 411 219 4 12 chr11 117888439 117888537 -3955319 - ID_B1 SINE B4 -150 142 43 8 1484 441 95 0 0 chr11 117889861 117889924 -3953932 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1484 389 336 113 77 chr11 117889952 117890024 -3953832 - B4A SINE B4 -6 286 197 8 1484 1160 63 0 0 chr11 117890024 117890167 -3953689 + B1_Mm SINE Alu 1 143 -4 8 1484 389 336 113 77 chr11 117890167 117890368 -3953488 - B4A SINE B4 -96 196 3 8 1484 763 223 79 25 chr11 117890418 117890620 -3953236 - B3 SINE B2 -2 214 2 8 1484 265 237 92 0 chr11 117891480 117891556 -3952300 - ID_B1 SINE B4 -54 170 88 8 1484 4095 160 99 77 chr11 117892145 117892184 -3951672 - RMER19B LTR ERVK 0 902 864 8 1484 1408 89 16 16 chr11 117892184 117892378 -3951478 - B2_Mm2 SINE B2 0 195 2 8 1484 4095 160 99 77 chr11 117892378 117893220 -3950636 - RMER19B LTR ERVK -39 863 2 8 1484 315 49 0 0 chr11 117893584 117893625 -3950231 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1484 477 302 119 47 chr11 117896207 117896375 -3947481 + MTEb LTR MaLR 1 173 -206 8 1484 788 194 199 26 chr11 117896375 117896566 -3947290 + URR1B DNA MER1_type 2 225 0 8 1484 477 302 119 47 chr11 117896566 117896633 -3947223 + MTEb LTR MaLR 174 253 -126 8 1484 1067 230 133 45 chr11 117896753 117897067 -3946789 - MTD LTR MaLR 0 419 74 9 1484 927 0 0 0 chr11 117897067 117897170 -3946686 + (TCTA)n Simple_repeat Simple_repeat 1 103 0 9 1484 1067 230 133 45 chr11 117897170 117897192 -3946664 - MTD LTR MaLR -346 73 53 9 1484 1040 53 0 0 chr11 117897171 117897304 -3946552 - B1_Mm SINE Alu -6 141 9 9 1484 539 123 0 0 chr11 117897308 117897389 -3946467 - MTD LTR MaLR -338 81 1 9 1484 277 300 15 98 chr11 117897945 117898078 -3945778 - PB1 SINE Alu -5 122 1 9 1484 525 252 71 101 chr11 117898078 117898142 -3945714 - ID SINE ID -160 64 6 9 1484 423 275 16 148 chr11 117899019 117899275 -3944581 + ID_B1 SINE B4 2 223 -1 9 1484 2372 115 43 38 chr11 117899891 117900361 -3943495 - RMER6A LTR ERVK 0 756 285 9 1484 183 28 0 77 chr11 117900367 117900406 -3943450 + (TCTCC)n Simple_repeat Simple_repeat 5 40 0 9 1484 593 143 11 59 chr11 117900408 117900594 -3943262 + CT-rich Low_complexity Low_complexity 2 178 0 9 1484 804 99 83 13 chr11 117900594 117900871 -3942985 - RMER6A LTR ERVK -412 344 2 9 1484 180 0 0 0 chr11 117901341 117901361 -3942495 + (CGGGG)n Simple_repeat Simple_repeat 5 24 0 9 1484 234 289 98 16 chr11 117901381 117901504 -3942352 - L1MB5 LINE L1 -1 6173 6041 9 1484 478 236 114 0 chr11 117901609 117901732 -3942124 - B1_Mur1 SINE Alu -11 138 2 9 1484 306 67 0 0 chr11 117902670 117902715 -3941141 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1484 692 269 93 22 chr11 117902986 117903326 -3940530 - MTD LTR MaLR -16 403 1 9 1484 469 303 48 48 chr11 117903881 117904068 -3939788 - B4A SINE B4 -104 188 2 9 1484 227 311 95 0 chr11 117904079 117904153 -3939703 - ID2 SINE ID 0 83 3 9 1484 326 282 45 9 chr11 117905301 117905412 -3938444 + L1MB5 LINE L1 6014 6128 -46 9 1484 695 239 33 0 chr11 117905444 117905601 -3938255 + RSINE1 SINE B4 1 165 0 9 1484 434 261 50 129 chr11 117905649 117905851 -3938005 + Lx8 LINE L1 7168 7353 -120 9 1484 955 204 6 6 chr11 117905851 117906024 -3937832 + B3 SINE B2 2 174 -42 9 1484 396 0 0 0 chr11 117906024 117906068 -3937788 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1484 1036 79 57 0 chr11 117906180 117906320 -3937536 + B1_Mus1 SINE Alu 1 148 0 9 1484 207 69 0 0 chr11 117907601 117907630 -3936226 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 9 1484 258 32 0 0 chr11 117907635 117907666 -3936190 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1484 302 282 14 0 chr11 117907666 117907737 -3936119 - RSINE1 SINE B4 -92 73 2 9 1484 1044 164 87 5 chr11 117907758 117907954 -3935902 - B3 SINE B2 0 216 5 9 1484 648 276 60 43 chr11 117907954 117908179 -3935677 - B4A SINE B4 -57 235 6 9 1484 2248 203 62 31 chr11 117909299 117909760 -3934096 + RLTR20A2 LTR ERVK 6 490 -88 9 1484 369 0 0 0 chr11 117909760 117909801 -3934055 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1484 2248 203 62 31 chr11 117909801 117909883 -3933973 + RLTR20A2 LTR ERVK 491 565 -13 9 1484 495 186 17 43 chr11 117909997 117910121 -3933735 + PB1D7 SINE Alu 3 121 -29 9 1484 972 265 5 9 chr11 117910121 117910338 -3933518 + ID_B1 SINE B4 2 217 -7 9 1484 390 279 22 65 chr11 117910338 117910351 -3933505 + B1_Mur4 SINE Alu 122 134 -16 9 1484 270 0 0 0 chr11 117911300 117911330 -3932526 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 9 1484 1514 33 32 11 chr11 117911863 117912048 -3931808 - B2_Mm2 SINE B2 -5 190 2 9 1484 660 169 135 23 chr11 117912098 117912231 -3931625 - B1_Mur3 SINE Alu -1 148 1 9 1484 487 256 8 17 chr11 117912279 117912398 -3931458 - RSINE1 SINE B4 -40 125 8 9 1484 4545 158 121 4 chr11 117912796 117913609 -3930247 + RMER13B LTR ERVK 1 908 0 9 1484 471 15 29 14 chr11 117913627 117913696 -3930160 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1484 640 218 11 0 chr11 117914400 117914574 -3929282 + (CCCA)n Simple_repeat Simple_repeat 2 177 0 9 1484 501 259 16 0 chr11 117914608 117914862 -3928994 + (CCCA)n Simple_repeat Simple_repeat 1 258 0 9 1484 503 240 17 17 chr11 117914863 117915041 -3928815 + (CCTA)n Simple_repeat Simple_repeat 3 180 0 9 1484 404 271 24 0 chr11 117915025 117915195 -3928661 + (CCCA)n Simple_repeat Simple_repeat 3 176 0 9 1484 200 206 0 0 chr11 117915642 117915676 -3928180 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 9 1484 267 330 8 56 chr11 117916010 117916135 -3927721 + MIRb SINE MIR 23 141 -127 9 1484 414 270 0 43 chr11 117916540 117916656 -3927200 + PB1D10 SINE Alu 1 111 -6 9 1484 537 218 51 36 chr11 117917457 117917595 -3926261 + B1F2 SINE Alu 5 144 -5 9 1484 865 264 66 52 chr11 117918568 117918856 -3925000 + B4 SINE B4 1 292 0 9 1484 431 194 185 44 chr11 117918873 117919008 -3924848 + RSINE1 SINE B4 12 165 0 9 1484 318 295 31 10 chr11 117919227 117919323 -3924533 - ID_B1 SINE B4 -9 215 118 9 1484 418 241 16 49 chr11 117920512 117920634 -3923222 - RSINE1 SINE B4 -45 120 3 9 1484 463 133 33 0 chr11 117920698 117920788 -3923068 + GA-rich Low_complexity Low_complexity 1 93 0 9 1484 541 237 20 84 chr11 117920788 117920958 -3922898 - B3A SINE B2 -14 181 29 9 1484 233 241 36 80 chr11 117920897 117921122 -3922734 + RMER17C LTR ERVK 31 245 -165 9 1484 507 215 37 9 chr11 117922081 117922189 -3921667 - RSINE1 SINE B4 0 165 55 9 1484 388 279 44 18 chr11 117922219 117922332 -3921524 - ID_B1 SINE B4 -8 216 101 9 1484 2077 220 89 34 chr11 117922544 117923127 -3920729 - MTC-int LTR MaLR -639 619 5 9 1484 7117 53 13 2 chr11 117923295 117924307 -3919549 - L1_Mus1 LINE L1 0 6567 5545 9 1484 312 122 0 0 chr11 117924309 117924358 -3919498 - MTD LTR MaLR -8 411 363 9 1484 345 104 0 0 chr11 117924355 117924403 -3919453 + B1_Mus1 SINE Alu 14 61 -87 9 1484 295 241 125 36 chr11 117924405 117924517 -3919339 - MTD LTR MaLR -228 191 70 9 1484 434 292 74 54 chr11 117924668 117925061 -3918795 + RLTR15 LTR ERVK 1 343 -16 9 1484 231 244 0 0 chr11 117925075 117925120 -3918736 - B1F SINE Alu -103 46 2 9 1484 240 362 85 23 chr11 117929606 117929736 -3914120 + MIRb SINE MIR 118 255 -13 9 1484 1047 157 0 0 chr11 117929781 117930062 -3913794 + (CCA)n Simple_repeat Simple_repeat 1 281 0 9 1484 833 103 48 0 chr11 117931002 117931128 -3912728 - ORR1A2 LTR MaLR -8 319 188 9 1484 489 114 0 0 chr11 117931113 117931192 -3912664 - ORR1A2 LTR MaLR -248 79 1 9 1484 378 331 16 0 chr11 117931300 117931424 -3912432 + MER53 DNA hAT 45 170 -23 9 1484 264 231 77 0 chr11 117931424 117931489 -3912367 - ID4 SINE ID -11 72 3 9 1484 277 235 15 0 chr11 117931489 117931557 -3912299 - PB1D10 SINE Alu -1 116 48 9 1484 815 284 4 31 chr11 117932230 117932455 -3911401 - ID_B1 SINE B4 0 224 6 9 1484 299 232 70 50 chr11 117932825 117932925 -3910931 - RSINE1 SINE B4 -58 107 6 9 1484 187 317 35 75 chr11 117933660 117933834 -3910022 + L2a LINE L2 2993 3159 -267 9 1484 312 27 0 0 chr11 117934468 117934505 -3909351 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1484 806 256 24 24 chr11 117935890 117936098 -3907758 - ID_B1 SINE B4 -16 208 1 9 1484 248 346 62 62 chr11 117936195 117936389 -3907467 + MLT1K LTR MaLR 401 594 -1 9 1484 186 321 19 0 chr11 117936511 117936564 -3907292 + MIR SINE MIR 85 138 -70 9 1484 26 0 0 0 chr11 117937611 117937637 -3906219 + GC_rich Low_complexity Low_complexity 1 26 0 9 1484 214 241 23 0 chr11 117938643 117938730 -3905126 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 9 1484 801 190 0 0 chr11 117938764 117938938 -3904918 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 9 1484 408 252 0 0 chr11 117938948 117939087 -3904769 + (TGGG)n Simple_repeat Simple_repeat 1 139 0 9 1484 476 156 5 50 chr11 117940220 117940324 -3903532 - PB1D10 SINE Alu -21 128 29 9 1484 189 107 0 0 chr11 117942286 117942314 -3901542 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1484 673 199 49 49 chr11 117942364 117942507 -3901349 - B1_Mur1 SINE Alu -6 143 1 9 1484 375 78 0 0 chr11 117942712 117942763 -3901093 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1484 23 0 0 0 chr11 117943543 117943566 -3900290 + GC_rich Low_complexity Low_complexity 1 23 0 9 1484 800 226 82 1 chr11 117944362 117944569 -3899287 - B4A SINE B4 0 292 70 9 1484 568 188 10 0 chr11 117944547 117944648 -3899208 - PB1D9 SINE Alu -1 119 18 9 1484 226 304 62 12 chr11 117944581 117944661 -3899195 - B4A SINE B4 -123 169 86 9 1484 622 226 114 18 chr11 117944682 117944849 -3899007 - B3A SINE B2 -11 187 5 9 1484 316 323 10 0 chr11 117944852 117944948 -3898908 - B4A SINE B4 -195 97 1 9 1484 459 279 58 24 chr11 117946515 117946795 -3897061 + MER57D LTR ERV1 1 330 -104 9 1484 276 155 0 0 chr11 117946795 117946866 -3896990 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 1484 504 303 0 15 chr11 117946990 117947124 -3896732 - B1F SINE Alu -13 136 5 9 1484 183 129 0 0 chr11 117948505 117948536 -3895320 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1484 204 263 64 26 chr11 117948744 117948822 -3895034 - MIR SINE MIR -90 118 38 9 1484 2406 120 30 100 chr11 117948823 117949324 -3894532 + RLTR11A LTR ERVK 63 528 0 9 1484 205 200 0 62 chr11 117949372 117949436 -3894420 + G-rich Low_complexity Low_complexity 4 63 0 9 1484 534 333 75 43 chr11 117949721 117950000 -3893856 + B4 SINE B4 2 289 -3 9 1484 279 0 0 0 chr11 117950086 117950117 -3893739 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1484 192 40 0 0 chr11 117950399 117950424 -3893432 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 1484 647 257 159 28 chr11 117950704 117950956 -3892900 + B4 SINE B4 8 292 0 9 1484 1940 216 41 24 chr11 117951545 117951957 -3891899 + MTD LTR MaLR 1 419 0 9 1484 980 109 22 0 chr11 117952189 117952326 -3891530 + B1_Mur3 SINE Alu 1 140 -9 9 1484 1018 203 18 66 chr11 117952373 117952600 -3891256 + B3 SINE B2 1 216 0 9 1484 538 263 39 26 chr11 117953524 117953680 -3890176 + RSINE1 SINE B4 3 160 -5 9 1484 1070 82 0 0 chr11 117953713 117953848 -3890008 - B1_Mus1 SINE Alu -13 135 1 1 1484 236 286 16 0 chr11 117953989 117954052 -3889804 + ID4_ SINE ID 14 77 -6 1 1484 806 134 0 8 chr11 117954609 117954737 -3889119 + RSINE1 SINE B4 2 128 -37 1 1484 219 246 115 0 chr11 117955272 117955333 -3888523 - MIRm SINE MIR -117 159 92 1 1484 639 293 203 10 chr11 117956372 117956662 -3887194 + ORR1E LTR MaLR 5 350 -9 1 1484 295 149 0 0 chr11 117957263 117957310 -3886546 - URR1B DNA MER1_type -13 212 166 1 1484 350 280 20 10 chr11 117957511 117957612 -3886244 + Lx8 LINE L1 6566 6667 -806 1 1484 243 0 0 0 chr11 117958702 117958729 -3885127 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1484 1186 30 0 0 chr11 117958729 117958863 -3884993 - B1_Mus1 SINE Alu -13 135 2 1 1484 356 293 32 16 chr11 117959274 117959399 -3884457 - ID_B1 SINE B4 -15 209 83 1 1484 1259 54 0 0 chr11 117960301 117960449 -3883407 + B1_Mus1 SINE Alu 1 148 0 1 1484 330 175 23 51 chr11 117960643 117960818 -3883038 + CT-rich Low_complexity Low_complexity 1 170 0 1 1484 515 273 0 77 chr11 117961093 117961248 -3882608 - ID_B1 SINE B4 0 224 82 1 1484 734 110 9 0 chr11 117961375 117961484 -3882372 + B2_Mm2 SINE B2 2 111 -84 1 1484 480 35 0 0 chr11 117961877 117961935 -3881921 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1484 198 0 0 0 chr11 117962452 117962474 -3881382 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 1 1484 514 273 100 38 chr11 117962771 117962931 -3880925 - B3 SINE B2 0 216 47 1 1484 225 196 0 0 chr11 117963197 117963253 -3880603 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1484 208 225 0 0 chr11 117963261 117963301 -3880555 + GA-rich Low_complexity Low_complexity 3 42 0 1 1485 239 245 38 0 chr11 117965187 117965240 -3878616 + MER74A LTR ERVL 17 71 -487 1 1485 374 349 50 82 chr11 117965288 117965591 -3878265 + MER74A LTR ERVL 169 461 -97 1 1485 290 111 355 18 chr11 117966874 117966984 -3876872 - B2_Mm2 SINE B2 0 195 49 1 1485 1377 58 35 0 chr11 117967058 117967232 -3876624 - B2_Mm1t SINE B2 -11 182 3 1 1485 21 36 0 0 chr11 117967235 117967263 -3876593 + AT_rich Low_complexity Low_complexity 1 28 0 1 1485 189 0 0 0 chr11 117968767 117968788 -3875068 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1485 940 274 5 22 chr11 117968949 117969173 -3874683 + MTEa LTR MaLR 154 373 -6 1 1485 225 291 123 130 chr11 117971035 117971197 -3872659 + MTEa LTR MaLR 203 363 -16 1 1485 313 26 0 0 chr11 117971672 117971711 -3872145 + HAL1-3A_ME LINE L1 1974 2012 -846 1 1485 334 206 10 20 chr11 117972460 117972532 -3871324 + (TGGG)n Simple_repeat Simple_repeat 2 73 0 1 1485 1062 140 0 0 chr11 117972532 117972711 -3871145 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1 1485 789 196 1 3 chr11 117972711 117972915 -3870941 + (TGGG)n Simple_repeat Simple_repeat 1 203 0 1 1485 293 258 0 22 chr11 117972918 117973009 -3870847 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 1 1485 631 239 50 64 chr11 117974185 117974404 -3869452 - B3 SINE B2 0 216 1 1 1485 258 32 0 0 chr11 117974630 117974661 -3869195 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1485 517 16 0 0 chr11 117974661 117974725 -3869131 - B1_Mus2 SINE Alu -9 138 75 1 1485 889 261 81 12 chr11 117974762 117975010 -3868846 + B4A SINE B4 24 288 -4 1 1485 227 273 0 0 chr11 117975017 117975072 -3868784 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1485 306 0 0 0 chr11 117975844 117975878 -3867978 + (GGA)n Simple_repeat Simple_repeat 2 35 0 1 1485 436 259 34 8 chr11 117976682 117976799 -3867057 + B3A SINE B2 1 120 -78 1 1485 235 272 105 60 chr11 117976799 117976815 -3867041 + B4A SINE B4 1 139 -153 1 1485 394 358 50 18 chr11 117977011 117977230 -3866626 + MLT2B1 LTR ERVL 341 566 -1 1 1485 409 359 65 0 chr11 117977232 117977416 -3866440 + MLT1D LTR MaLR 276 471 -34 1 1485 275 325 125 7 chr11 117977635 117977787 -3866069 - ORR1E LTR MaLR -127 232 63 1 1485 261 254 0 0 chr11 117979474 117979533 -3864323 + tRNA-Ala-GCA tRNA tRNA 1 59 -16 1 1485 345 299 0 0 chr11 117979731 117979898 -3863958 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1485 279 315 66 61 chr11 117980565 117980761 -3863095 + MER89 LTR ERV1 361 557 -2 1 1485 243 0 0 0 chr11 117981271 117981298 -3862558 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1485 1262 27 7 0 chr11 117981349 117981495 -3862361 - B1_Mus1 SINE Alu 0 148 2 1 1485 414 239 145 159 chr11 117984010 117984224 -3859632 - ID_B1 SINE B4 -8 216 6 1 1485 751 284 68 45 chr11 117984320 117984426 -3859430 + B4A SINE B4 2 100 -192 1 1485 946 213 29 38 chr11 117984426 117984636 -3859220 + B3 SINE B2 1 208 -8 1 1485 751 284 68 45 chr11 117984636 117984795 -3859061 + B4A SINE B4 101 273 -19 1 1485 532 38 12 12 chr11 117984968 117985048 -3858808 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1485 1424 71 49 0 chr11 117985906 117986090 -3857766 - B2_Mm2 SINE B2 -2 193 1 1 1485 1173 103 37 26 chr11 117986167 117986356 -3857500 - B2_Mm2 SINE B2 -4 191 1 1 1485 300 27 0 0 chr11 117987732 117987769 -3856087 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1485 627 121 0 0 chr11 117987847 117987946 -3855910 + (CCA)n Simple_repeat Simple_repeat 1 99 0 1 1485 758 184 6 0 chr11 117988807 117988986 -3854870 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1485 707 202 0 11 chr11 117988950 117989130 -3854726 + (TATG)n Simple_repeat Simple_repeat 1 178 0 1 1485 699 321 42 32 chr11 117989130 117989413 -3854443 - B4A SINE B4 0 292 7 1 1485 488 288 112 0 chr11 117989421 117989626 -3854230 + MLT1B LTR MaLR 85 312 -78 1 1485 366 171 0 0 chr11 117990850 117990920 -3852936 + G-rich Low_complexity Low_complexity 3 72 0 1 1485 209 167 19 0 chr11 117992226 117992280 -3851576 + CT-rich Low_complexity Low_complexity 3 57 0 1 1485 1217 47 0 13 chr11 117992280 117992430 -3851426 - B1_Mus1 SINE Alu 0 148 1 1 1485 373 279 101 50 chr11 117992520 117992739 -3851117 - Lx8 LINE L1 -29 7444 7215 1 1485 279 211 0 0 chr11 117992909 117992966 -3850890 - MLT1J LTR MaLR -12 396 340 1 1485 353 305 76 38 chr11 117992966 117993104 -3850752 + RSINE1 SINE B4 3 150 -15 1 1485 261 0 0 0 chr11 117993104 117993133 -3850723 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1485 353 305 76 38 chr11 117993133 117993151 -3850705 + RSINE1 SINE B4 151 165 0 1 1485 253 252 0 45 chr11 117993297 117993409 -3850447 + (TTAAA)n Simple_repeat Simple_repeat 5 111 0 1 1485 300 286 91 16 chr11 117993641 117993762 -3850094 + L1M2 LINE L1 4059 4188 -1955 1 1485 2128 83 44 77 chr11 117994102 117994441 -3849415 + ORR1A4 LTR MaLR 2 329 0 1 1485 332 333 83 40 chr11 117994462 117994483 -3849373 - MLT1J LTR MaLR -274 238 216 1 1485 468 0 0 0 chr11 117994483 117994535 -3849321 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1485 332 333 83 40 chr11 117994535 117994741 -3849115 - MLT1J LTR MaLR -297 215 1 1 1485 318 277 12 0 chr11 117995265 117995348 -3848508 - MER103 DNA DNA -82 84 1 1 1485 842 278 91 29 chr11 117995437 117995711 -3848145 + B4A SINE B4 1 291 -1 1 1485 2394 74 3 0 chr11 117996096 117996422 -3847434 + ORR1A2 LTR MaLR 1 327 0 1 1485 933 275 103 16 chr11 117996645 117996955 -3846901 + ORR1E LTR MaLR 19 355 -4 1 1485 2611 92 0 0 chr11 117998394 117998721 -3845135 + ORR1A2 LTR MaLR 1 327 0 1 1485 271 28 0 0 chr11 117999040 117999076 -3844780 + RLTR10B2 LTR ERVK 1 36 -256 1 1485 2024 63 85 39 chr11 117999093 117999423 -3844433 + RLTR10B2 LTR ERVK 21 365 0 1 1485 3904 127 87 9 chr11 118000005 118000645 -3843211 + RMER19A LTR ERVK 23 719 -18 1 1485 1114 88 0 0 chr11 118000645 118000792 -3843064 + B1_Mus1 SINE Alu 1 147 -1 2 1485 3904 127 87 9 chr11 118000792 118000803 -3843053 + RMER19A LTR ERVK 720 725 -12 1 1485 237 200 39 91 chr11 118001174 118001211 -3842645 + B3 SINE B2 143 180 -36 3 1485 258 32 0 0 chr11 118001211 118001242 -3842614 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1485 237 200 39 91 chr11 118001242 118001281 -3842575 + B3 SINE B2 181 215 -1 3 1485 963 82 0 0 chr11 118001452 118001586 -3842270 + (TC)n Simple_repeat Simple_repeat 1 134 0 5 1485 309 306 116 14 chr11 118001588 118001734 -3842122 + RMER10B LTR ERVL 238 398 0 6 1485 556 215 29 22 chr11 118002637 118002775 -3841081 + B1F SINE Alu 9 147 -2 7 1485 471 276 32 0 chr11 118002944 118003067 -3840789 - B1F1 SINE Alu -8 141 15 8 1485 435 38 0 0 chr11 118003653 118003706 -3840150 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1485 225 125 0 70 chr11 118003710 118003753 -3840103 - MT2A LTR ERVL -71 462 423 1 1485 348 172 0 0 chr11 118004296 118004354 -3839502 + MTD LTR MaLR 362 419 0 1 1485 1054 271 45 48 chr11 118004306 118004627 -3839229 - MTD LTR MaLR -2 417 95 1 1485 1562 27 0 0 chr11 118004627 118004814 -3839042 - B2_Mm1a SINE B2 -5 188 2 1 1485 1054 271 45 48 chr11 118004814 118004867 -3838989 - MTD LTR MaLR -325 94 44 1 1485 1993 108 87 44 chr11 118004867 118004925 -3838931 - RLTR14 LTR ERV1 0 382 335 1 1485 1347 97 87 0 chr11 118004925 118005131 -3838725 + URR1A DNA MER1_type 3 226 0 1 1485 1993 108 87 44 chr11 118005131 118005438 -3838418 - RLTR14 LTR ERV1 -48 334 1 1 1485 182 293 115 48 chr11 118005537 118005641 -3838215 - MIRc SINE MIR -133 135 25 1 1485 899 197 95 147 chr11 118005663 118006009 -3837847 + MTEb LTR MaLR 1 328 -51 1 1485 284 313 61 0 chr11 118006583 118006682 -3837174 + ID_B1 SINE B4 112 216 -8 1 1485 576 299 25 37 chr11 118006700 118006863 -3836993 + RSINE1 SINE B4 4 164 -1 1 1485 239 331 0 6 chr11 118006868 118007047 -3836809 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1485 339 276 94 8 chr11 118007878 118007995 -3835861 + MLT1H LTR MaLR 75 201 -348 2 1485 504 258 0 24 chr11 118008184 118008311 -3835545 + ID_B1 SINE B4 101 224 0 2 1485 323 230 21 103 chr11 118008304 118008401 -3835455 + MT2B2 LTR ERVL 152 240 -344 2 1485 812 111 29 22 chr11 118008323 118008461 -3835395 + B1_Mus2 SINE Alu 9 147 0 2 1485 267 103 0 0 chr11 118008463 118008502 -3835354 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2 1485 411 73 0 0 chr11 118008645 118008700 -3835156 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1485 699 161 0 0 chr11 118008978 118009096 -3834760 + B1_Mus2 SINE Alu 3 120 -27 2 1485 1842 166 73 31 chr11 118009158 118009629 -3834227 + RMER4B LTR ERVK 17 466 0 2 1485 238 194 113 0 chr11 118010002 118010064 -3833792 + ID_B1 SINE B4 90 158 -66 2 1485 670 263 19 32 chr11 118010224 118010381 -3833475 - RSINE1 SINE B4 0 165 11 3 1485 248 261 72 0 chr11 118011096 118011165 -3832691 - MLT1A0 LTR MaLR -76 289 216 3 1485 735 270 8 11 chr11 118013178 118013350 -3830506 + B3A SINE B2 1 165 -30 3 1485 450 0 0 0 chr11 118013350 118013400 -3830456 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1485 423 0 0 0 chr11 118013400 118013446 -3830410 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1485 442 281 43 106 chr11 118013446 118013479 -3830377 + B2_Mm2 SINE B2 166 193 -2 3 1485 398 238 66 9 chr11 118013487 118013593 -3830263 + PB1D10 SINE Alu 1 112 -5 3 1485 1157 61 0 0 chr11 118013696 118013843 -3830013 + B1_Mus1 SINE Alu 2 148 0 3 1485 191 0 103 0 chr11 118013843 118013872 -3829984 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 3 1485 396 45 45 0 chr11 118013894 118013961 -3829895 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 3 1485 405 246 84 74 chr11 118014411 118014613 -3829243 + MLT1B LTR MaLR 110 313 -77 3 1485 511 243 18 0 chr11 118015667 118015778 -3828078 - B4A SINE B4 -179 113 1 4 1485 503 306 106 67 chr11 118016252 118016518 -3827338 + MLT1A0 LTR MaLR 1 290 -75 4 1485 2680 43 11 39 chr11 118016518 118016882 -3826974 + IAPEY2_LTR LTR ERVK 1 354 -3 4 1485 503 282 37 198 chr11 118016882 118016990 -3826866 + MLT1A0 LTR MaLR 291 408 0 4 1485 2537 116 21 33 chr11 118017074 118017502 -3826354 - RMER4A LTR ERVK 0 466 44 4 1485 192 40 0 0 chr11 118017679 118017704 -3826152 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1485 1041 193 69 0 chr11 118019822 118020024 -3823832 + B3 SINE B2 1 216 0 4 1485 1030 194 44 0 chr11 118020157 118020363 -3823493 + B3 SINE B2 1 215 -1 4 1485 472 257 21 28 chr11 118020883 118021027 -3822829 + B1F SINE Alu 2 144 -5 4 1485 355 246 129 65 chr11 118021898 118022037 -3821819 + B1F2 SINE Alu 2 149 0 4 1485 249 109 0 0 chr11 118022101 118022147 -3821709 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 4 1485 215 180 40 0 chr11 118023131 118023181 -3820675 + L2c LINE L2 3336 3387 0 5 1485 592 170 0 0 chr11 118024341 118024447 -3819409 - PB1D9 SINE Alu -14 106 1 5 1485 257 211 224 0 chr11 118024451 118024603 -3819253 - L1M4 LINE L1 -1592 4554 4369 5 1485 756 250 14 50 chr11 118024612 118024831 -3819025 - B3 SINE B2 -5 211 1 5 1485 846 222 47 19 chr11 118024899 118025110 -3818746 + ID_B1 SINE B4 2 218 -6 5 1485 29 0 0 0 chr11 118025552 118025581 -3818275 + AT_rich Low_complexity Low_complexity 1 29 0 5 1485 188 227 23 0 chr11 118028560 118028604 -3815252 + MIR SINE MIR 101 145 -117 5 1485 264 268 85 0 chr11 118030633 118030715 -3813141 + B4 SINE B4 9 97 -195 5 1485 819 162 21 0 chr11 118030716 118030858 -3812998 + B1_Mus2 SINE Alu 3 147 0 5 1485 24 0 0 0 chr11 118030872 118030896 -3812960 + AT_rich Low_complexity Low_complexity 1 24 0 5 1485 273 288 53 60 chr11 118030896 118031029 -3812827 + B4A SINE B4 81 212 -80 5 1485 655 158 104 8 chr11 118031231 118031365 -3812491 + B1_Mus2 SINE Alu 1 147 0 6 1485 242 95 24 0 chr11 118031381 118031423 -3812433 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1485 243 294 53 21 chr11 118031660 118031754 -3812102 + B4 SINE B4 195 291 -1 5 1485 225 0 0 0 chr11 118032932 118032957 -3810899 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 6 1485 406 247 153 91 chr11 118033340 118033594 -3810262 - RMER17C LTR ERVK -3 407 138 6 1485 867 146 14 7 chr11 118035511 118035656 -3808200 + B1_Mus2 SINE Alu 1 146 -1 6 1485 321 47 0 0 chr11 118035665 118035708 -3808148 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 1485 1232 98 27 5 chr11 118035832 118036016 -3807840 + B2_Mm2 SINE B2 2 189 -6 6 1485 372 150 0 0 chr11 118037613 118037673 -3806183 - B1F SINE Alu -37 112 53 6 1485 282 303 9 27 chr11 118042126 118042238 -3801618 - PB1 SINE Alu -17 110 1 6 1485 354 273 81 0 chr11 118042254 118042353 -3801503 - U6 snRNA snRNA 0 107 1 6 1485 324 273 173 0 chr11 118044421 118044531 -3799325 + B1_Mur3 SINE Alu 2 130 -19 7 1485 666 150 142 0 chr11 118044843 118044970 -3798886 - B1_Mus1 SINE Alu -1 147 3 7 1485 480 178 45 106 chr11 118045706 118045838 -3798018 + MT2B LTR ERVL 155 278 -323 7 1485 1023 57 0 21 chr11 118045724 118045868 -3797988 + B1_Mus1 SINE Alu 8 148 0 7 1485 544 180 45 0 chr11 118045910 118046021 -3797835 + B1_Mur4 SINE Alu 35 150 0 7 1485 750 302 81 9 chr11 118047368 118047689 -3796167 - L1MB8 LINE L1 -30 6148 5805 7 1485 647 192 61 8 chr11 118048292 118048423 -3795433 - B1F SINE Alu -10 139 2 7 1485 207 125 0 0 chr11 118048516 118048556 -3795300 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1485 1042 85 0 0 chr11 118048567 118048708 -3795148 + B1_Mus1 SINE Alu 1 141 -7 7 1485 450 0 0 0 chr11 118049487 118049537 -3794319 + (TATG)n Simple_repeat Simple_repeat 3 52 0 7 1485 795 199 7 7 chr11 118049539 118049681 -3794175 - B1_Mur4 SINE Alu -6 144 3 8 1485 424 264 72 26 chr11 118049702 118049854 -3794002 - RSINE1 SINE B4 -4 161 3 8 1485 643 221 29 7 chr11 118050322 118050459 -3793397 + RSINE1 SINE B4 11 150 -15 8 1485 219 310 72 55 chr11 118050459 118050503 -3793353 + B2_Mm2 SINE B2 10 193 -2 8 1485 1164 61 0 0 chr11 118050933 118051081 -3792775 + B1_Mus1 SINE Alu 1 148 0 8 1485 235 177 79 16 chr11 118051107 118051170 -3792686 - L1M5 LINE L1 -738 5706 5640 8 1485 275 219 55 0 chr11 118051412 118051485 -3792371 - L1M5 LINE L1 -878 5268 5192 8 1485 883 162 0 0 chr11 118051632 118051774 -3792082 - B1_Mur2 SINE Alu -6 143 2 8 1485 364 230 214 158 chr11 118051858 118052054 -3791802 + B3 SINE B2 1 207 -9 8 1485 1233 160 32 0 chr11 118053095 118053314 -3790542 - URR1A DNA MER1_type 0 226 1 8 1485 329 250 25 126 chr11 118053363 118053482 -3790374 + MT2B LTR ERVL 151 257 -344 8 1485 826 154 15 0 chr11 118053386 118053522 -3790334 + B1_Mur2 SINE Alu 7 144 -5 9 1485 200 93 47 0 chr11 118054014 118054057 -3789799 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 9 1485 945 85 0 0 chr11 118054093 118054222 -3789634 + B2_Mm2 SINE B2 1 129 -66 9 1485 206 32 0 31 chr11 118054585 118054617 -3789239 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 9 1485 251 354 21 0 chr11 118055870 118055966 -3787890 - Tigger7 DNA MER2_type -1869 622 525 9 1485 454 275 69 0 chr11 118056005 118056136 -3787720 - Tigger7 DNA MER2_type -2307 184 45 9 1485 339 25 0 0 chr11 118056295 118056335 -3787521 + (CGGGG)n Simple_repeat Simple_repeat 3 42 0 9 1485 444 211 83 10 chr11 118057145 118057241 -3786615 + B3 SINE B2 2 104 -112 9 1485 245 275 54 11 chr11 118057762 118057776 -3786080 + B4A SINE B4 77 136 -156 9 1485 309 194 69 0 chr11 118057776 118057848 -3786008 + B1F1 SINE Alu 5 81 -68 9 1485 183 80 0 0 chr11 118057931 118057956 -3785900 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1485 252 0 0 0 chr11 118059948 118059976 -3783880 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1485 1233 55 0 0 chr11 118060252 118060398 -3783458 + B1_Mus2 SINE Alu 1 146 -1 1 1485 186 272 22 45 chr11 118061108 118061188 -3782668 + MIR SINE MIR 30 110 -98 1 1485 248 260 103 10 chr11 118061819 118061916 -3781940 + L1MB3 LINE L1 5818 5923 -260 1 1485 396 0 0 0 chr11 118061939 118061983 -3781873 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1485 290 151 0 0 chr11 118062038 118062091 -3781765 + L1MB2 LINE L1 6117 6169 -2 1 1485 1015 55 0 165 chr11 118065377 118065553 -3778303 + B1_Mus1 SINE Alu 2 148 0 1 1485 234 0 0 0 chr11 118067761 118067787 -3776069 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1485 1273 104 44 0 chr11 118068029 118068212 -3775644 - B2_Mm2 SINE B2 0 195 5 1 1485 1639 192 135 5 chr11 118068305 118068676 -3775180 - MTD LTR MaLR 0 419 1 1 1485 198 0 0 0 chr11 118070109 118070131 -3773725 + (CAG)n Simple_repeat Simple_repeat 3 24 0 1 1485 21 0 0 0 chr11 118071421 118071442 -3772414 + AT_rich Low_complexity Low_complexity 1 21 0 1 1485 207 250 32 32 chr11 118071590 118071652 -3772204 - L2b LINE L2 -4 3371 3310 1 1485 1070 202 30 0 chr11 118072166 118072364 -3771492 + B3 SINE B2 2 205 -11 1 1485 459 0 0 0 chr11 118073754 118073805 -3770051 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1485 181 210 143 16 chr11 118074618 118074681 -3769175 + L3 LINE CR1 753 823 -3666 1 1485 216 221 68 68 chr11 118074718 118074791 -3769065 + RSINE1 SINE B4 58 130 -35 1 1485 725 199 76 0 chr11 118074874 118075005 -3768851 + B1_Mus2 SINE Alu 1 141 -6 1 1485 467 270 0 17 chr11 118075252 118075369 -3768487 - PB1D10 SINE Alu 0 117 3 1 1485 478 226 49 0 chr11 118075451 118075553 -3768303 - ID_B1 SINE B4 -9 215 109 1 1485 482 288 199 26 chr11 118075631 118076066 -3767790 - L1M2 LINE L1 -978 5165 4656 1 1485 693 234 152 5 chr11 118076711 118076722 -3767134 - B4A SINE B4 -49 243 233 1 1485 952 176 0 0 chr11 118076722 118076864 -3766992 - B1_Mur3 SINE Alu -7 142 1 1 1485 693 234 152 5 chr11 118076864 118077062 -3766794 - B4A SINE B4 -60 232 4 1 1485 1050 263 97 28 chr11 118077307 118077698 -3766158 - MTD LTR MaLR 0 419 2 1 1485 190 309 135 47 chr11 118078449 118078619 -3765237 - L2 LINE L2 -448 2971 2787 1 1485 1037 54 8 0 chr11 118079084 118079213 -3764643 + B2_Mm2 SINE B2 2 131 -64 1 1485 507 33 0 0 chr11 118079231 118079292 -3764564 + (GAAA)n Simple_repeat Simple_repeat 3 63 0 1 1485 418 268 8 43 chr11 118079586 118079703 -3764153 + PB1D10 SINE Alu 2 114 -3 1 1485 341 328 33 25 chr11 118079721 118079843 -3764013 + B1F SINE Alu 14 136 -13 1 1485 784 216 14 7 chr11 118079947 118080087 -3763769 + B1_Mur2 SINE Alu 1 141 -8 1 1485 267 54 0 0 chr11 118080089 118080126 -3763730 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1485 23 0 0 0 chr11 118080943 118080966 -3762890 + AT_rich Low_complexity Low_complexity 1 23 0 1 1485 261 291 101 16 chr11 118081188 118081317 -3762539 + Charlie24 DNA MER1_type 1919 2058 -392 1 1485 307 303 56 0 chr11 118081389 118081478 -3762378 - PB1D10 SINE Alu -16 101 8 1 1485 28 79 0 0 chr11 118081979 118082042 -3761814 + AT_rich Low_complexity Low_complexity 1 63 0 1 1485 315 287 83 50 chr11 118082207 118082328 -3761528 - PB1D9 SINE Alu -17 130 6 1 1485 885 108 49 28 chr11 118083434 118083577 -3760279 + B1_Mur3 SINE Alu 4 149 0 1 1485 207 0 0 0 chr11 118083577 118083600 -3760256 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1485 536 246 49 0 chr11 118084397 118084519 -3759337 - ID_B1 SINE B4 -6 218 91 1 1485 339 343 160 18 chr11 118084520 118084802 -3759054 - L1MC4a LINE L1 -242 7640 7319 1 1485 354 248 33 40 chr11 118084930 118085081 -3758775 - L1MC4a LINE L1 -997 6885 6736 1 1485 225 0 0 0 chr11 118085438 118085463 -3758393 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1485 270 224 237 0 chr11 118085683 118085759 -3758097 + B1F SINE Alu 4 97 -52 1 1485 406 167 59 0 chr11 118085820 118085922 -3757934 - MER33 DNA MER1_type -84 240 133 1 1485 317 229 200 9 chr11 118086142 118086252 -3757604 - L1MCa LINE L1 -4549 1959 1829 1 1485 497 210 121 0 chr11 118086253 118086377 -3757479 + B2_Mm2 SINE B2 1 139 -56 1 1485 315 0 0 0 chr11 118086394 118086429 -3757427 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1485 495 0 0 0 chr11 118087193 118087248 -3756608 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1485 283 229 57 0 chr11 118087887 118087957 -3755899 + B3 SINE B2 2 75 -141 1 1485 1162 52 0 0 chr11 118088673 118088808 -3755048 - B1_Mus1 SINE Alu -12 136 2 1 1485 542 257 26 59 chr11 118089819 118089972 -3753884 - RSINE1 SINE B4 -1 164 17 1 1485 239 247 27 27 chr11 118090105 118090180 -3753676 + LTR79 LTR ERVL 414 488 -39 1 1485 319 247 12 49 chr11 118090219 118090300 -3753556 - ID4 SINE ID -4 79 2 1 1485 546 259 0 0 chr11 118090302 118090414 -3753442 - PB1D10 SINE Alu -5 112 1 1 1485 22 56 0 0 chr11 118090667 118090703 -3753153 + AT_rich Low_complexity Low_complexity 1 36 0 1 1485 277 203 43 14 chr11 118090862 118090932 -3752924 + ID4 SINE ID 2 73 -10 1 1485 276 77 0 0 chr11 118090932 118090971 -3752885 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1485 312 320 0 0 chr11 118091156 118091234 -3752622 - ID2 SINE ID -2 81 4 1 1485 819 215 162 68 chr11 118092423 118092608 -3751248 + B4A SINE B4 3 228 -64 1 1485 476 259 26 53 chr11 118092608 118092759 -3751097 + B1_Mur1 SINE Alu 1 147 -2 1 1485 819 215 162 68 chr11 118092759 118092838 -3751018 + B4A SINE B4 229 292 0 1 1485 399 200 0 48 chr11 118092842 118093031 -3750825 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1485 21 0 0 0 chr11 118093157 118093178 -3750678 + AT_rich Low_complexity Low_complexity 1 21 0 1 1485 22 0 0 0 chr11 118093205 118093227 -3750629 + AT_rich Low_complexity Low_complexity 1 22 0 1 1485 214 315 82 0 chr11 118093229 118093302 -3750554 + B3 SINE B2 1 79 -137 1 1485 38 0 0 0 chr11 118094389 118094427 -3749429 + AT_rich Low_complexity Low_complexity 1 38 0 1 1485 834 260 11 0 chr11 118094441 118094622 -3749234 - B3A SINE B2 -15 183 1 1 1485 652 253 20 0 chr11 118094643 118094789 -3749067 - B1_Mur2 SINE Alu 0 149 1 1 1485 658 201 6 89 chr11 118094849 118095007 -3748849 - B1_Mur3 SINE Alu 0 149 5 1 1485 1576 27 0 26 chr11 118095599 118095792 -3748064 + B2_Mm2 SINE B2 1 188 -7 1 1486 459 0 0 0 chr11 118096572 118096623 -3747233 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 1 1486 1531 39 11 0 chr11 118096628 118096806 -3747050 - B2_Mm2 SINE B2 -14 181 2 1 1486 678 204 22 14 chr11 118097230 118097369 -3746487 + B1_Mur1 SINE Alu 10 149 0 1 1486 300 186 0 0 chr11 118097369 118097428 -3746428 + GA-rich Low_complexity Low_complexity 3 61 0 1 1486 309 309 22 87 chr11 118097428 118097474 -3746382 + L1M5 LINE L1 3081 3126 -3020 1 1486 1207 41 7 0 chr11 118097474 118097620 -3746236 + B1_Mus2 SINE Alu 1 147 0 1 1486 309 309 22 87 chr11 118097620 118097711 -3746145 + L1M5 LINE L1 3127 3209 -2937 1 1486 251 191 0 16 chr11 118099309 118099373 -3744483 + GA-rich Low_complexity Low_complexity 3 65 0 1 1486 284 253 183 65 chr11 118099693 118099862 -3743994 + B3 SINE B2 27 215 -1 1 1486 877 45 9 0 chr11 118099873 118099984 -3743872 + B1_Mur4 SINE Alu 39 150 0 1 1486 261 269 47 108 chr11 118099876 118100005 -3743851 + B4A SINE B4 126 246 -46 1 1486 999 191 93 25 chr11 118100015 118100252 -3743604 + B4 SINE B4 1 253 -39 1 1486 726 145 0 0 chr11 118100265 118100389 -3743467 + (GA)n Simple_repeat Simple_repeat 1 124 0 1 1486 623 248 36 24 chr11 118100827 118100992 -3742864 + ID_B1 SINE B4 2 168 -56 1 1486 934 206 0 118 chr11 118102461 118102480 -3741376 - URR1B DNA MER1_type -31 194 150 1 1486 295 245 69 172 chr11 118102480 118102520 -3741336 + CYRA11_Mm Unknown Y-chromosome 221 257 -360 1 1486 1282 113 21 0 chr11 118102520 118102706 -3741150 + B2_Mm2 SINE B2 1 190 -5 1 1486 934 206 0 118 chr11 118102706 118102866 -3740990 - URR1B DNA MER1_type -76 149 1 1 1486 295 245 69 172 chr11 118102866 118102897 -3740959 + CYRA11_Mm Unknown Y-chromosome 258 428 -189 1 1486 1017 228 5 9 chr11 118104387 118104604 -3739252 + B3 SINE B2 1 216 0 1 1486 1214 69 0 0 chr11 118104617 118104762 -3739094 + B1_Mus2 SINE Alu 2 146 -1 1 1486 270 0 0 0 chr11 118104762 118104792 -3739064 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1486 22 0 0 0 chr11 118105013 118105035 -3738821 + AT_rich Low_complexity Low_complexity 1 22 0 1 1486 694 228 27 7 chr11 118105810 118105956 -3737900 + B1_Mur1 SINE Alu 1 149 0 1 1486 690 215 30 61 chr11 118105958 118106132 -3737724 + B3 SINE B2 4 179 -16 1 1486 605 245 28 14 chr11 118106161 118106302 -3737554 + ID_B1 SINE B4 82 224 0 1 1486 409 232 0 66 chr11 118107116 118107222 -3736634 + PB1 SINE Alu 27 125 -2 1 1486 258 220 0 0 chr11 118107263 118107322 -3736534 + GA-rich Low_complexity Low_complexity 2 60 0 1 1486 500 262 65 16 chr11 118107502 118107626 -3736230 + RSINE1 SINE B4 3 132 -33 1 1486 270 0 0 0 chr11 118107626 118107656 -3736200 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1486 619 269 148 34 chr11 118107669 118108022 -3735834 + MLT1D LTR MaLR 27 448 -57 1 1486 300 241 0 20 chr11 118110599 118110679 -3733177 + ID4 SINE ID 12 89 -63 1 1486 261 0 0 0 chr11 118110887 118110916 -3732940 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1486 1011 152 0 0 chr11 118111419 118111597 -3732259 + GA-rich Low_complexity Low_complexity 1 178 0 1 1486 420 37 0 0 chr11 118111597 118111651 -3732205 + (GAA)n Simple_repeat Simple_repeat 2 55 0 1 1486 262 222 0 0 chr11 118111711 118111765 -3732091 + B1_Mur4 SINE Alu 2 55 -95 2 1486 632 107 48 0 chr11 118111830 118111933 -3731923 + B1_Mur2 SINE Alu 42 149 0 2 1486 4691 222 76 5 chr11 118112025 118113221 -3730635 - Lx9 LINE L1 -6 7638 6318 2 1486 484 287 16 0 chr11 118113649 118113778 -3730078 + RSINE1 SINE B4 1 131 -34 2 1486 2169 81 32 0 chr11 118113810 118114119 -3729737 + ORR1A2 LTR MaLR 1 319 -8 2 1486 755 258 15 35 chr11 118114131 118114328 -3729528 + B3A SINE B2 6 198 0 2 1486 1348 61 32 27 chr11 118114455 118114641 -3729215 + B2_Mm2 SINE B2 1 187 -8 2 1486 363 262 147 107 chr11 118114841 118115140 -3728716 + MLT1B LTR MaLR 47 357 -33 2 1486 495 283 53 43 chr11 118115180 118115368 -3728488 + B3A SINE B2 1 190 -8 2 1486 340 224 79 0 chr11 118116456 118116532 -3727324 + RSINE1 SINE B4 56 137 -28 2 1486 1061 85 43 0 chr11 118116661 118116802 -3727054 + B1_Mus1 SINE Alu 1 147 -1 2 1486 721 237 10 28 chr11 118116820 118117021 -3726835 + B3 SINE B2 1 192 -3 2 1486 1182 51 0 0 chr11 118117046 118117183 -3726673 + B1_Mus2 SINE Alu 1 137 -10 2 1486 221 0 0 33 chr11 118117183 118117213 -3726643 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1486 573 191 0 0 chr11 118117227 118117342 -3726514 + GA-rich Low_complexity Low_complexity 2 116 0 2 1486 318 194 0 134 chr11 118117703 118117822 -3726034 + MT2B LTR ERVL 153 255 -346 2 1486 554 182 28 35 chr11 118117718 118117860 -3725996 + B1_Mur4 SINE Alu 1 141 -9 2 1486 1220 247 76 16 chr11 118118830 118119147 -3724709 + MTE2b LTR MaLR 20 355 -24 2 1486 206 252 43 30 chr11 118122910 118123074 -3720782 + (CA)n Simple_repeat Simple_repeat 2 167 0 2 1486 258 255 57 13 chr11 118123093 118123252 -3720604 + (CA)n Simple_repeat Simple_repeat 2 167 0 2 1486 215 61 30 0 chr11 118125076 118125109 -3718747 + (TTC)n Simple_repeat Simple_repeat 3 36 0 2 1486 273 220 17 0 chr11 118125248 118125307 -3718549 + RSINE1 SINE B4 9 68 -97 2 1486 189 74 0 0 chr11 118125358 118125385 -3718471 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1486 671 258 0 0 chr11 118125402 118125534 -3718322 + RSINE1 SINE B4 4 135 -30 2 1486 650 202 8 68 chr11 118125593 118125751 -3718105 + B3 SINE B2 1 140 -55 2 1486 757 148 29 15 chr11 118126663 118126800 -3717056 - B1_Mur3 SINE Alu -9 140 2 2 1486 332 280 12 117 chr11 118126800 118126833 -3717023 - MT2B LTR ERVL -448 153 138 2 1486 272 275 50 0 chr11 118127180 118127260 -3716596 + ID_B1 SINE B4 89 172 -52 2 1486 381 220 15 19 chr11 118127297 118127416 -3716440 + PB1D9 SINE Alu 25 142 -8 2 1486 527 182 103 40 chr11 118127880 118128006 -3715850 + B1_Mur3 SINE Alu 4 137 -12 2 1486 841 222 103 0 chr11 118128060 118128245 -3715611 + B3 SINE B2 2 205 -11 2 1486 252 233 100 0 chr11 118128275 118128335 -3715521 + B1_Mur3 SINE Alu 2 67 -82 2 1486 1559 58 26 0 chr11 118130674 118130864 -3712992 + B2_Mm2 SINE B2 1 195 0 2 1486 1165 185 23 14 chr11 118131214 118131428 -3712428 + B3 SINE B2 1 216 0 2 1486 675 167 33 8 chr11 118131956 118132077 -3711779 - B1_Mur4 SINE Alu -7 143 20 2 1486 318 80 0 0 chr11 118132084 118132134 -3711722 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1486 1398 83 39 0 chr11 118132265 118132445 -3711411 - B2_Mm2 SINE B2 -5 190 4 2 1486 332 267 32 43 chr11 118132553 118132647 -3711209 + PB1D7 SINE Alu 4 96 -24 2 1486 483 287 28 51 chr11 118132829 118132875 -3710981 + ID_B1 SINE B4 51 222 -2 2 1486 839 108 8 8 chr11 118132875 118133005 -3710851 + B1_Mus2 SINE Alu 17 146 -1 2 1486 385 336 8 0 chr11 118135097 118135222 -3708634 - B1F SINE Alu -22 127 2 2 1486 247 212 76 0 chr11 118135462 118135528 -3708328 + MTD LTR MaLR 27 97 -322 2 1486 270 248 296 12 chr11 118135581 118135707 -3708149 - B3 SINE B2 0 216 73 2 1486 349 284 158 53 chr11 118135707 118135878 -3707978 + B3A SINE B2 5 193 -5 2 1486 950 132 14 7 chr11 118135890 118136035 -3707821 + B1_Mur3 SINE Alu 3 148 -1 2 1486 604 235 83 26 chr11 118136042 118136234 -3707622 + B3 SINE B2 14 216 0 2 1486 333 172 0 0 chr11 118136666 118136730 -3707126 + GA-rich Low_complexity Low_complexity 3 66 0 2 1486 853 122 14 7 chr11 118136751 118136891 -3706965 + B1_Mur2 SINE Alu 9 149 0 2 1486 1960 131 50 28 chr11 118139019 118139341 -3704515 + ORR1A4 LTR MaLR 1 329 0 2 1486 529 131 219 8 chr11 118142350 118142473 -3701383 + B1_Mur4 SINE Alu 2 150 0 2 1486 466 333 116 0 chr11 118142975 118143191 -3700665 + B4A SINE B4 52 292 0 2 1486 538 246 41 149 chr11 118143303 118143546 -3700310 - B3 SINE B2 -1 215 1 2 1486 1350 91 21 11 chr11 118143668 118143856 -3700000 - B2_Mm2 SINE B2 -4 191 2 2 1486 557 151 19 19 chr11 118143866 118143974 -3699882 - B1_Mur1 SINE Alu -25 124 17 2 1486 185 373 127 0 chr11 118144314 118144448 -3699408 - MIR SINE MIR -68 194 44 2 1486 296 250 80 0 chr11 118144840 118144928 -3698928 - B4 SINE B4 -19 273 179 2 1486 938 201 85 10 chr11 118145091 118145292 -3698564 - B3 SINE B2 0 216 1 2 1486 696 287 36 7 chr11 118145292 118145505 -3698351 - B3A SINE B2 -1 215 8 2 1486 1164 43 35 0 chr11 118145549 118145690 -3698166 + B1_Mus1 SINE Alu 3 148 0 2 1486 491 276 121 17 chr11 118145703 118145876 -3697980 - B3 SINE B2 -22 194 4 2 1486 226 348 28 90 chr11 118146686 118146863 -3696993 - B4A SINE B4 -126 166 1 2 1486 353 264 106 81 chr11 118147544 118147705 -3696151 + B3A SINE B2 29 198 0 2 1486 369 242 74 0 chr11 118147720 118147815 -3696041 + B1_Mur1 SINE Alu 16 117 -32 2 1486 285 247 122 10 chr11 118148060 118148158 -3695698 + Charlie5 DNA MER1_type 2469 2577 -47 2 1486 258 232 146 0 chr11 118148241 118148323 -3695533 + PB1D10 SINE Alu 21 114 -3 2 1486 527 267 9 0 chr11 118149262 118149378 -3694478 + PB1D10 SINE Alu 1 117 0 2 1486 368 72 0 18 chr11 118149485 118149542 -3694314 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1486 795 51 246 0 chr11 118149766 118149884 -3693972 - B1_Mus2 SINE Alu 0 147 1 2 1486 316 278 22 60 chr11 118151927 118152061 -3691795 + ID_B1 SINE B4 36 164 -60 2 1486 241 274 53 27 chr11 118152099 118152174 -3691682 + PB1D10 SINE Alu 36 112 -5 2 1486 381 216 111 20 chr11 118152250 118152349 -3691507 + B3A SINE B2 2 109 -89 2 1486 567 228 69 63 chr11 118152442 118152601 -3691255 - B3A SINE B2 -38 160 1 2 1486 908 106 45 0 chr11 118152947 118153079 -3690777 + B1_Mur4 SINE Alu 2 139 -11 2 1486 288 0 0 0 chr11 118153079 118153111 -3690745 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 1486 297 167 0 0 chr11 118153453 118153507 -3690349 + CT-rich Low_complexity Low_complexity 3 56 0 2 1486 859 196 0 0 chr11 118153511 118153659 -3690197 - B1_Mus1 SINE Alu 0 148 1 2 1486 826 147 214 28 chr11 118154280 118154462 -3689394 + B3 SINE B2 1 216 0 2 1486 469 207 0 0 chr11 118154576 118154663 -3689193 + ID_B1 SINE B4 124 210 -14 2 1486 541 147 153 18 chr11 118155213 118155324 -3688532 - B1_Mur3 SINE Alu -21 128 3 2 1486 1026 239 41 22 chr11 118155527 118155796 -3688060 + B4A SINE B4 1 274 -18 2 1486 190 56 27 27 chr11 118155818 118155855 -3688001 + (CACAC)n Simple_repeat Simple_repeat 1 37 0 2 1486 1409 192 143 18 chr11 118155891 118156219 -3687637 + ORR1D1 LTR MaLR 1 369 -5 2 1486 1259 48 0 0 chr11 118156219 118156366 -3687490 + B1_Mus2 SINE Alu 1 147 0 2 1486 180 0 0 0 chr11 118156366 118156386 -3687470 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1486 189 0 0 0 chr11 118156386 118156407 -3687449 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1486 4555 200 50 100 chr11 118157828 118159533 -3684323 - RMER1A Other Other 0 1030 1 2 1486 203 178 0 22 chr11 118159910 118159956 -3683900 + G-rich Low_complexity Low_complexity 2 46 0 2 1486 385 243 29 10 chr11 118159968 118160072 -3683784 - PB1D10 SINE Alu -7 110 5 2 1486 523 273 122 44 chr11 118160924 118161104 -3682752 - B3A SINE B2 -1 197 4 2 1486 472 286 14 87 chr11 118161113 118161260 -3682596 - B4A SINE B4 -64 228 85 2 1486 1238 48 0 13 chr11 118161260 118161409 -3682447 + B1_Mus1 SINE Alu 2 148 0 2 1486 472 286 14 87 chr11 118161409 118161479 -3682377 - B4A SINE B4 -208 84 27 2 1486 684 179 16 39 chr11 118161498 118161626 -3682230 - B1_Mur1 SINE Alu -1 148 24 2 1486 264 185 19 0 chr11 118162040 118162094 -3681762 + RMER15 LTR ERVL 424 478 -97 2 1486 764 280 82 15 chr11 118162102 118162298 -3681558 - ID_B1 SINE B4 -15 209 1 2 1486 2779 114 20 2 chr11 118165374 118165770 -3678086 + RLTR9D LTR ERVK 1 403 0 2 1486 1006 267 34 56 chr11 118165772 118166181 -3677675 + ETnERV2-int LTR ERVK 3 402 -2912 2 1486 4634 141 106 21 chr11 118166181 118167117 -3676739 + ETnERV2-int LTR ERVK 1071 2085 -5321 2 1486 2575 150 37 15 chr11 118167142 118167623 -3676233 + ETnERV2-int LTR ERVK 2496 2987 -4419 2 1486 3869 188 19 38 chr11 118167639 118169700 -3674156 + ETnERV2-int LTR ERVK 2335 6425 -981 2 1486 401 105 25 38 chr11 118169906 118169985 -3673871 + ETnERV2-int LTR ERVK 7327 7404 -2 2 1486 2894 110 5 2 chr11 118169986 118170388 -3673468 + RLTR9D LTR ERVK 1 403 0 2 1486 661 274 65 0 chr11 118170682 118170883 -3672973 - ID_B1 SINE B4 -3 221 8 2 1486 485 258 40 0 chr11 118170885 118171009 -3672847 - B1F SINE Alu -13 136 8 2 1486 293 353 39 50 chr11 118171009 118171067 -3672789 - ID_B1 SINE B4 -13 211 32 2 1486 785 182 73 0 chr11 118172154 118172291 -3671565 - B1_Mur4 SINE Alu -1 149 3 2 1486 647 221 7 32 chr11 118172321 118172475 -3671381 + B3A SINE B2 2 151 -47 2 1486 240 200 0 0 chr11 118172506 118172556 -3671300 + CT-rich Low_complexity Low_complexity 1 50 0 2 1486 783 160 0 22 chr11 118172600 118172734 -3671122 - B1_Mur4 SINE Alu -6 144 14 3 1486 804 274 85 67 chr11 118172793 118173144 -3670712 + MTE2a LTR MaLR 47 421 0 3 1486 526 175 19 19 chr11 118173228 118173333 -3670523 - B4A SINE B4 -187 105 1 3 1486 373 329 0 53 chr11 118173410 118173580 -3670276 - RSINE1 SINE B4 -2 163 3 3 1486 839 248 175 8 chr11 118174190 118174430 -3669426 - B4A SINE B4 -8 284 5 3 1486 909 148 14 7 chr11 118174456 118174599 -3669257 - B1_Mur4 SINE Alu -3 147 4 3 1486 679 266 32 0 chr11 118175030 118175184 -3668672 + RSINE1 SINE B4 3 161 -4 3 1486 1338 83 27 16 chr11 118175306 118175490 -3668366 + B2_Mm2 SINE B2 2 187 -8 3 1486 689 194 3 25 chr11 118175612 118175973 -3667883 + (TATG)n Simple_repeat Simple_repeat 1 352 0 3 1486 210 37 0 0 chr11 118175993 118176020 -3667836 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 3 1486 501 220 0 28 chr11 118176060 118176238 -3667618 + (TATG)n Simple_repeat Simple_repeat 2 174 0 3 1486 601 295 82 39 chr11 118176240 118176596 -3667260 + L1MB3 LINE L1 5745 6115 -68 3 1486 443 179 0 9 chr11 118176671 118176778 -3667078 + (TG)n Simple_repeat Simple_repeat 1 106 0 3 1486 500 275 113 0 chr11 118176784 118176926 -3666930 - RSINE1 SINE B4 -4 161 4 3 1486 419 288 71 9 chr11 118176964 118177076 -3666780 - PB1D9 SINE Alu -1 119 1 3 1486 315 290 32 0 chr11 118179299 118179392 -3664464 - PB1D10 SINE Alu -21 96 1 3 1486 659 114 57 3 chr11 118179567 118179870 -3663986 + (TG)n Simple_repeat Simple_repeat 1 319 0 3 1486 629 226 97 26 chr11 118179984 118180179 -3663677 - B3 SINE B2 -7 209 1 3 1486 392 293 40 0 chr11 118180450 118180549 -3663307 - ID_B1 SINE B4 -121 103 1 3 1486 189 74 0 0 chr11 118180549 118180576 -3663280 + (TCTCCC)n Simple_repeat Simple_repeat 2 28 0 3 1486 263 93 23 0 chr11 118180695 118180738 -3663118 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1486 1664 212 69 6 chr11 118180916 118181277 -3662579 + ORR1C2 LTR MaLR 1 384 0 3 1486 388 290 43 21 chr11 118181738 118181824 -3662032 + B4 SINE B4 3 91 -201 3 1486 330 225 50 0 chr11 118181824 118181904 -3661952 + PB1D10 SINE Alu 3 86 -31 3 1486 788 156 0 90 chr11 118181932 118182087 -3661769 + B1_Mur1 SINE Alu 8 148 -1 3 1486 268 257 27 0 chr11 118182413 118182487 -3661369 + ID4 SINE ID 5 80 -3 3 1486 23 0 0 0 chr11 118182594 118182617 -3661239 + AT_rich Low_complexity Low_complexity 1 23 0 3 1486 273 268 0 0 chr11 118182651 118182707 -3661149 - RSINE1 SINE B4 -36 129 74 3 1486 701 171 53 30 chr11 118182717 118182886 -3660970 - B4 SINE B4 -50 242 70 3 1486 664 184 0 0 chr11 118183747 118183856 -3660000 + B1_Mm SINE Alu 11 119 -28 3 1486 344 296 51 27 chr11 118184473 118184652 -3659204 + ID_B1 SINE B4 2 222 -2 3 1486 393 39 0 0 chr11 118186483 118186534 -3657322 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1486 509 44 15 0 chr11 118186534 118186602 -3657254 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1486 725 208 0 0 chr11 118186603 118186728 -3657128 - B1_Mur1 SINE Alu -24 125 1 3 1486 204 158 0 0 chr11 118189356 118189394 -3654462 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 3 1486 3849 21 7 5 chr11 118190577 118191012 -3652844 + RLTR10C LTR ERVK 1 436 0 3 1486 275 197 11 156 chr11 118192975 118193065 -3650791 - ID4_ SINE ID -5 78 2 3 1486 532 262 28 21 chr11 118195669 118195813 -3648043 + MER20 DNA MER1_type 34 178 -41 3 1486 425 313 9 9 chr11 118196546 118196662 -3647194 - PB1D10 SINE Alu -1 116 1 3 1486 567 266 23 93 chr11 118197679 118197832 -3646024 + L1M4 LINE L1 4899 5048 -1098 3 1486 261 0 0 0 chr11 118197832 118197861 -3645995 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1486 567 272 27 96 chr11 118197861 118198005 -3645851 + L1M4 LINE L1 5043 5171 -969 3 1486 403 288 69 38 chr11 118198112 118198271 -3645585 + RSINE1 SINE B4 2 165 0 3 1486 1673 36 0 0 chr11 118198349 118198542 -3645314 + B2_Mm1t SINE B2 1 193 0 3 1486 615 232 55 21 chr11 118198553 118198698 -3645158 + B3A SINE B2 24 173 -25 3 1486 243 195 25 49 chr11 118198729 118198810 -3645046 + C-rich Low_complexity Low_complexity 5 83 0 3 1486 413 296 205 11 chr11 118198856 118199139 -3644717 + L1M4 LINE L1 5329 5666 -512 3 1486 741 23 0 0 chr11 118199141 118199228 -3644628 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1486 263 368 87 11 chr11 118201046 118201230 -3642626 - Tigger15a DNA TcMar -237 478 281 3 1486 380 231 66 19 chr11 118201445 118201551 -3642305 - PB1D10 SINE Alu -4 113 3 3 1486 1050 246 55 4 chr11 118202053 118202310 -3641546 + B4A SINE B4 1 270 -22 3 1486 930 131 0 0 chr11 118202342 118202472 -3641384 + B1_Mus2 SINE Alu 1 130 -17 3 1486 192 77 0 0 chr11 118202476 118202502 -3641354 + (CGGGG)n Simple_repeat Simple_repeat 4 29 0 3 1486 466 340 82 10 chr11 118202863 118203071 -3640785 + L3 LINE CR1 4182 4404 -85 3 1486 351 288 16 63 chr11 118204674 118204800 -3639056 + MLT2B2 LTR ERVL 1 120 -395 3 1486 533 301 5 58 chr11 118205370 118205575 -3638281 + B4A SINE B4 4 197 -95 3 1486 261 0 0 0 chr11 118205577 118205606 -3638250 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1486 585 69 0 0 chr11 118205606 118205692 -3638164 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1486 489 289 101 60 chr11 118205692 118205891 -3637965 + B4 SINE B4 86 292 0 3 1486 414 248 118 17 chr11 118205939 118206062 -3637794 + PB1D10 SINE Alu 3 148 -1 3 1486 197 140 114 23 chr11 118206735 118206779 -3637077 + MIRb SINE MIR 63 110 -158 3 1486 1010 198 6 0 chr11 118208152 118208329 -3635527 - B3A SINE B2 -20 178 1 3 1486 273 261 71 71 chr11 118208442 118208541 -3635315 + RSINE1 SINE B4 63 161 -4 3 1486 234 0 0 0 chr11 118209383 118209409 -3634447 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 3 1486 27 0 0 0 chr11 118209635 118209662 -3634194 + AT_rich Low_complexity Low_complexity 1 27 0 3 1486 613 235 58 13 chr11 118209662 118209817 -3634039 - RSINE1 SINE B4 -3 162 1 3 1486 369 0 0 0 chr11 118212111 118212152 -3631704 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1486 336 333 23 23 chr11 118214474 118214606 -3629250 + MLT1C LTR MaLR 329 460 -7 3 1486 462 277 30 8 chr11 118217515 118217646 -3626210 + B1F1 SINE Alu 1 134 -15 3 1486 317 217 0 12 chr11 118217659 118217743 -3626113 + GA-rich Low_complexity Low_complexity 2 84 0 3 1486 547 304 37 0 chr11 118217758 118217919 -3625937 + B3A SINE B2 1 167 -31 3 1486 1443 47 0 0 chr11 118217922 118218177 -3625679 + (TG)n Simple_repeat Simple_repeat 1 255 0 3 1486 350 294 82 70 chr11 118218444 118218684 -3625172 + B4 SINE B4 1 219 -73 3 1486 450 251 21 46 chr11 118218742 118218911 -3624945 + B3A SINE B2 38 216 0 3 1486 394 184 12 0 chr11 118218911 118219085 -3624771 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1486 1134 184 42 24 chr11 118219498 118219710 -3624146 + B3 SINE B2 1 216 0 3 1486 551 223 0 191 chr11 118219741 118219924 -3623932 - B1_Mur2 SINE Alu -1 148 1 3 1486 441 263 4 221 chr11 118219924 118219990 -3623866 - ID_B1 SINE B4 0 224 30 3 1486 663 156 5 38 chr11 118220434 118220576 -3623280 + RLTR26 LTR ERVK 1 136 -772 3 1486 260 402 0 0 chr11 118220866 118220963 -3622893 + ID_B1 SINE B4 87 183 -41 3 1486 281 263 172 0 chr11 118221002 118221101 -3622755 + PB1D10 SINE Alu 1 116 -1 3 1486 817 216 21 19 chr11 118221121 118221306 -3622550 + B3 SINE B2 1 187 -8 3 1486 1212 28 7 20 chr11 118221383 118221531 -3622325 + B1_Mus1 SINE Alu 2 147 -1 3 1486 211 129 16 31 chr11 118221532 118221596 -3622260 + A-rich Low_complexity Low_complexity 3 65 0 3 1486 300 292 208 0 chr11 118221677 118221831 -3622025 - ID_B1 SINE B4 -34 190 5 3 1486 1137 125 26 26 chr11 118222734 118222923 -3620933 - B2_Mm1t SINE B2 -3 190 2 3 1486 254 241 0 0 chr11 118223835 118223889 -3619967 + GA-rich Low_complexity Low_complexity 2 55 0 3 1486 226 289 0 40 chr11 118224194 118224295 -3619561 + C-rich Low_complexity Low_complexity 3 99 0 3 1486 603 185 138 0 chr11 118225822 118225952 -3617904 - B1F2 SINE Alu -1 148 1 3 1486 256 277 50 30 chr11 118225979 118226113 -3617743 - L2a LINE L2 -1 3425 3237 3 1486 959 199 156 12 chr11 118226113 118226357 -3617499 + B4A SINE B4 2 280 -12 3 1486 222 345 59 33 chr11 118226357 118226375 -3617481 - L2a LINE L2 -139 3236 3218 3 1487 360 0 0 0 chr11 118226971 118227011 -3616845 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1487 432 229 0 40 chr11 118227980 118228080 -3615776 + PB1D9 SINE Alu 18 113 -7 3 1487 386 182 0 0 chr11 118228119 118228185 -3615671 + B3A SINE B2 4 69 -129 3 1487 2772 165 31 25 chr11 118228185 118228739 -3615117 + RLTR20B2 LTR ERVK 1 557 -3 3 1487 446 195 186 8 chr11 118228743 118228872 -3614984 + B3 SINE B2 65 216 0 3 1487 3229 51 15 12 chr11 118228901 118229300 -3614556 - MTB LTR MaLR 0 400 1 3 1487 441 287 0 0 chr11 118229409 118229510 -3614346 + PB1D10 SINE Alu 1 101 -16 3 1487 755 228 44 44 chr11 118229750 118229956 -3613900 + B3 SINE B2 1 206 -10 3 1487 245 186 42 28 chr11 118229992 118230064 -3613792 + L1MB8 LINE L1 6106 6178 0 3 1487 967 122 14 21 chr11 118230073 118230216 -3613640 + B1_Mur3 SINE Alu 1 142 -7 3 1487 658 128 8 8 chr11 118230225 118230343 -3613513 + (GGA)n Simple_repeat Simple_repeat 3 120 0 3 1487 744 253 34 17 chr11 118230351 118230528 -3613328 + ID_B1 SINE B4 5 184 -40 3 1487 228 337 0 39 chr11 118230650 118230752 -3613104 + (CGGG)n Simple_repeat Simple_repeat 3 100 0 4 1487 509 227 92 0 chr11 118231309 118231428 -3612428 + ID_B1 SINE B4 90 219 -5 4 1487 201 163 0 0 chr11 118231442 118231491 -3612365 + C-rich Low_complexity Low_complexity 1 49 0 4 1487 297 0 0 0 chr11 118231730 118231763 -3612093 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 4 1487 361 220 0 32 chr11 118231772 118231866 -3611990 - PB1D10 SINE Alu -26 91 1 4 1487 581 189 87 170 chr11 118231872 118232102 -3611754 - B3 SINE B2 -5 211 1 4 1487 252 319 73 21 chr11 118232118 118232214 -3611642 - PB1D10 SINE Alu 0 120 20 4 1487 623 289 12 12 chr11 118233321 118233489 -3610367 + B4 SINE B4 63 230 -62 4 1487 829 119 7 65 chr11 118233818 118233971 -3609885 - B1_Mus1 SINE Alu 0 148 5 4 1487 379 260 20 20 chr11 118234627 118234729 -3609127 - PB1 SINE Alu -25 102 1 4 1487 284 284 49 0 chr11 118234909 118234990 -3608866 + MLT1G3 LTR MaLR 98 182 -413 4 1487 2298 60 12 25 chr11 118234991 118235314 -3608542 - ORR1A2 LTR MaLR -8 319 1 4 1487 285 294 108 43 chr11 118237232 118237417 -3606439 - MER31A LTR ERV1 -44 441 245 4 1487 231 297 98 10 chr11 118237471 118237573 -3606283 - MER31A LTR ERV1 -360 125 15 4 1487 215 233 0 0 chr11 118238189 118238232 -3605624 + CT-rich Low_complexity Low_complexity 2 44 0 4 1487 444 305 9 0 chr11 118238337 118238442 -3605414 - RSINE1 SINE B4 -46 119 14 4 1487 1040 111 6 0 chr11 118238464 118238626 -3605230 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 4 1487 563 239 59 65 chr11 118238683 118238853 -3605003 - B2_Mm2 SINE B2 0 195 27 4 1487 183 42 0 0 chr11 118238865 118238889 -3604967 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1487 1186 43 7 0 chr11 118238892 118239033 -3604823 - B1_Mus1 SINE Alu -6 142 1 4 1487 387 374 102 59 chr11 118239421 118239842 -3604014 + MLT1C LTR MaLR 4 442 -25 4 1487 328 333 118 49 chr11 118240356 118240602 -3603254 - MER21B LTR ERV1 -212 651 389 4 1487 739 272 28 28 chr11 118241292 118241324 -3602532 - B3 SINE B2 0 216 187 4 1487 3071 70 22 15 chr11 118241324 118241728 -3602128 + MTB_Mm LTR MaLR 1 407 0 4 1487 739 272 28 28 chr11 118241728 118241907 -3601949 - B3 SINE B2 -30 186 5 4 1487 321 26 0 0 chr11 118241933 118241971 -3601885 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1487 1148 62 0 27 chr11 118242018 118242168 -3601688 + B1_Mm SINE Alu 2 147 0 4 1487 243 146 0 0 chr11 118242168 118242209 -3601647 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1487 702 129 129 0 chr11 118242221 118242337 -3601519 + B1_Mur4 SINE Alu 1 131 -19 4 1487 1732 198 70 12 chr11 118242337 118242424 -3601432 + RMER19A LTR ERVK 121 186 -551 4 1487 519 17 0 0 chr11 118242424 118242484 -3601372 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1487 1732 205 214 4 chr11 118242484 118242933 -3600923 + RMER19A LTR ERVK 187 736 -1 4 1487 291 157 0 0 chr11 118242962 118243013 -3600843 + GA-rich Low_complexity Low_complexity 3 53 0 4 1487 35941 47 9 22 chr11 118243219 118249507 -3594349 - L1Md_F2 LINE L1 -12 6570 377 4 1487 298 294 0 0 chr11 118249545 118249613 -3594243 + Lx8 LINE L1 6707 6774 -699 4 1487 741 175 0 0 chr11 118249629 118249755 -3594101 - B1F2 SINE Alu -9 140 15 4 1487 329 267 25 1 chr11 118249760 118249851 -3594005 + Lx8 LINE L1 6785 6886 -587 4 1487 1159 189 150 33 chr11 118249866 118249890 -3593966 - ORR1D1 LTR MaLR -45 329 309 4 1487 1678 27 0 0 chr11 118249890 118250076 -3593780 + B2_Mm1a SINE B2 1 186 -7 4 1487 1159 189 150 33 chr11 118250076 118250325 -3593531 - ORR1D1 LTR MaLR -66 308 24 4 1487 1490 184 34 12 chr11 118250361 118250681 -3593175 - RLTR15 LTR ERVK 0 359 33 4 1487 914 301 166 15 chr11 118250717 118251193 -3592663 + Lx8 LINE L1 6926 7473 0 4 1487 397 164 1 67 chr11 118251240 118251333 -3592523 - RSINE1 SINE B4 -75 90 3 4 1487 2564 164 2 37 chr11 118251378 118251814 -3592042 - MTC LTR MaLR 0 421 1 4 1487 323 237 45 16 chr11 118251834 118251955 -3591901 - B1F1 SINE Alu -10 139 15 4 1487 245 262 0 16 chr11 118252625 118252687 -3591169 + L1M5 LINE L1 5453 5513 -931 4 1487 1031 237 50 84 chr11 118252772 118253131 -3590725 - MTE2a LTR MaLR -15 364 18 4 1487 267 31 0 0 chr11 118253195 118253227 -3590629 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1487 252 0 0 0 chr11 118253439 118253467 -3590389 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1487 217 216 0 0 chr11 118256378 118256415 -3587441 + polypurine Low_complexity Low_complexity 1 37 0 4 1487 2274 106 85 8 chr11 118257064 118257417 -3586439 + ORR1C2 LTR MaLR 5 384 0 4 1487 237 159 0 0 chr11 118257499 118257543 -3586313 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1487 205 231 15 30 chr11 118257752 118257819 -3586037 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1487 297 0 0 0 chr11 118260021 118260054 -3583802 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1487 227 333 25 0 chr11 118262664 118262745 -3581111 + MER81 DNA AcHobo 30 112 -2 4 1487 658 253 111 17 chr11 118263752 118263933 -3579923 + B3A SINE B2 1 198 0 4 1487 739 169 64 35 chr11 118263981 118264122 -3579734 + B1_Mur3 SINE Alu 5 149 0 4 1487 180 0 0 0 chr11 118264151 118264171 -3579685 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1487 536 257 46 46 chr11 118264189 118264340 -3579516 + RSINE1 SINE B4 15 165 0 4 1487 24 32 0 0 chr11 118264343 118264374 -3579482 + AT_rich Low_complexity Low_complexity 1 31 0 4 1487 999 255 0 19 chr11 118264380 118264596 -3579260 + B3 SINE B2 2 213 -3 4 1487 189 228 158 0 chr11 118265160 118265217 -3578639 + MER5B DNA MER1_type 1 66 -112 4 1487 737 174 7 14 chr11 118265713 118265859 -3577997 - URR1A DNA MER1_type -3 223 79 4 1487 306 234 24 112 chr11 118266303 118266428 -3577428 + MT2B LTR ERVL 143 256 -345 4 1487 868 149 7 0 chr11 118266333 118266474 -3577382 + B1_Mur4 SINE Alu 9 150 0 4 1487 347 169 14 0 chr11 118266957 118267028 -3576828 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1487 427 248 33 133 chr11 118267029 118267210 -3576646 - RSINE1 SINE B4 0 165 3 4 1487 21 0 0 0 chr11 118268564 118268585 -3575271 + GC_rich Low_complexity Low_complexity 1 21 0 4 1487 491 288 7 5 chr11 118271846 118271994 -3571862 + MTEb LTR MaLR 8 149 -230 4 1487 359 245 20 30 chr11 118272013 118272114 -3571742 + MTEb LTR MaLR 242 341 -38 4 1487 345 201 20 23 chr11 118276051 118276144 -3567712 - PB1D7 SINE Alu -13 114 18 4 1487 306 260 200 68 chr11 118276135 118276370 -3567486 + MLT1D LTR MaLR 164 429 -76 4 1487 332 305 53 75 chr11 118277759 118277947 -3565909 - MLT1C LTR MaLR 0 467 284 4 1487 180 0 0 0 chr11 118281489 118281509 -3562347 + (CG)n Simple_repeat Simple_repeat 2 21 0 4 1487 267 31 0 0 chr11 118281509 118281540 -3562316 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1487 477 0 0 0 chr11 118281540 118281592 -3562264 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1487 591 272 55 35 chr11 118281662 118281864 -3561992 - B4 SINE B4 -85 207 2 4 1487 724 225 56 41 chr11 118282639 118282834 -3561022 - ID_B1 SINE B4 -24 200 3 4 1487 1403 95 0 16 chr11 118283287 118283480 -3560376 + B2_Mm2 SINE B2 1 190 -5 4 1487 884 224 40 0 chr11 118283488 118283689 -3560167 - B3 SINE B2 -6 210 2 4 1487 352 182 0 15 chr11 118283732 118283799 -3560057 - Lx8 LINE L1 -5 7468 7403 4 1487 535 237 136 19 chr11 118283864 118284019 -3559837 - Lx8 LINE L1 -405 7068 6896 4 1487 293 292 150 23 chr11 118284134 118284267 -3559589 - LTR48 LTR ERV1 -637 150 1 4 1487 556 156 8 8 chr11 118285574 118285703 -3558153 + (CA)n Simple_repeat Simple_repeat 2 130 0 4 1487 374 288 0 63 chr11 118286743 118286869 -3556987 + PB1D7 SINE Alu 3 120 0 4 1487 315 0 0 0 chr11 118286887 118286922 -3556934 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1487 721 254 0 0 chr11 118286945 118287087 -3556769 - B1_Mur1 SINE Alu -7 142 1 4 1487 252 168 30 40 chr11 118288412 118288511 -3555345 + GA-rich Low_complexity Low_complexity 2 99 0 4 1487 424 247 11 22 chr11 118288497 118288675 -3555181 + G-rich Low_complexity Low_complexity 3 178 0 4 1487 204 40 0 0 chr11 118289341 118289366 -3554490 + (CAGC)n Simple_repeat Simple_repeat 1 25 0 4 1487 801 31 0 0 chr11 118289650 118289746 -3554110 + (TC)n Simple_repeat Simple_repeat 2 97 0 4 1487 240 287 43 77 chr11 118290942 118291059 -3552797 + B1F SINE Alu 37 149 0 4 1487 209 222 0 0 chr11 118291130 118291175 -3552681 + A-rich Low_complexity Low_complexity 1 45 0 4 1487 267 103 0 0 chr11 118293880 118293919 -3549937 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1487 265 118 14 29 chr11 118293921 118293991 -3549865 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 4 1487 578 109 11 0 chr11 118294242 118294334 -3549522 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 1487 909 41 0 8 chr11 118294338 118294460 -3549396 - B1_Mus1 SINE Alu 0 148 28 4 1487 398 240 63 6 chr11 118295842 118295964 -3547892 + B3A SINE B2 1 121 -72 4 1487 297 0 0 0 chr11 118295974 118296007 -3547849 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1487 351 0 0 0 chr11 118296184 118296223 -3547633 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1487 393 305 31 15 chr11 118297019 118297149 -3546707 + B1F SINE Alu 5 136 -13 4 1487 517 91 0 33 chr11 118297151 118297242 -3546614 + (TCCC)n Simple_repeat Simple_repeat 2 89 0 4 1487 189 147 0 0 chr11 118297234 118297268 -3546588 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 4 1487 581 231 163 17 chr11 118297354 118297526 -3546330 - B3A SINE B2 -1 197 1 4 1487 455 250 0 57 chr11 118297554 118297677 -3546179 + PB1D7 SINE Alu 3 118 -2 4 1487 198 311 16 0 chr11 118299307 118299368 -3544488 - L2 LINE L2 -806 2613 2552 4 1487 277 299 0 106 chr11 118299474 118299616 -3544240 + Charlie5 DNA MER1_type 2 128 -2496 4 1487 336 247 82 0 chr11 118299575 118299672 -3544184 - BC1_Mm scRNA scRNA -45 107 3 4 1487 333 270 72 26 chr11 118299726 118299878 -3543978 + B4 SINE B4 2 160 -132 5 1487 1637 164 144 89 chr11 118300823 118301035 -3542821 - RMER10A LTR ERVL -2 440 229 5 1487 345 47 0 0 chr11 118301035 118301078 -3542778 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1487 1637 164 144 89 chr11 118301078 118301281 -3542575 - RMER10A LTR ERVL -214 228 2 5 1487 318 106 0 0 chr11 118301595 118301642 -3542214 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1487 524 325 48 24 chr11 118301812 118302020 -3541836 + MER20 DNA MER1_type 1 213 -6 5 1487 297 192 139 76 chr11 118302083 118302162 -3541694 + PB1D10 SINE Alu 26 109 -18 5 1487 224 263 13 32 chr11 118302667 118302824 -3541032 + (TG)n Simple_repeat Simple_repeat 1 154 0 5 1487 453 309 0 48 chr11 118302904 118303091 -3540765 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1487 459 272 3 52 chr11 118303143 118303460 -3540396 + (TG)n Simple_repeat Simple_repeat 1 301 0 5 1487 185 242 0 42 chr11 118303477 118303572 -3540284 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 1487 1092 257 14 65 chr11 118303613 118303904 -3539952 - B4 SINE B4 -16 276 1 5 1487 387 0 0 0 chr11 118304871 118304914 -3538942 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1487 213 119 0 0 chr11 118305594 118305636 -3538220 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1487 202 315 54 14 chr11 118306338 118306412 -3537444 - L2b LINE L2 -5 3370 3294 5 1487 309 68 0 0 chr11 118307596 118307640 -3536216 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1487 348 221 109 44 chr11 118308149 118308286 -3535570 + B4A SINE B4 10 155 -137 5 1487 205 88 29 0 chr11 118308296 118308330 -3535526 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 5 1487 904 131 163 0 chr11 118308330 118308483 -3535373 - B2_Mm2 SINE B2 -16 179 2 5 1487 285 326 47 27 chr11 118312117 118312265 -3531591 - MLT1C LTR MaLR -10 457 307 5 1487 261 335 109 57 chr11 118312304 118312497 -3531359 - MLT1C LTR MaLR -284 221 19 5 1487 633 225 16 0 chr11 118312915 118313044 -3530812 - ID_B1 SINE B4 -14 210 80 5 1487 291 191 0 0 chr11 118313181 118313244 -3530612 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1487 985 16 16 0 chr11 118313497 118313620 -3530236 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 5 1487 635 254 112 0 chr11 118313689 118313858 -3529998 - B3 SINE B2 -5 211 24 5 1487 4685 172 17 41 chr11 118313903 118314831 -3529025 + RMER13B LTR ERVK 1 906 -2 5 1487 787 139 54 0 chr11 118314873 118315002 -3528854 - B1_Mus2 SINE Alu -2 145 10 5 1487 882 176 79 11 chr11 118315050 118315228 -3528628 + B2_Mm2 SINE B2 3 192 -3 5 1487 276 304 57 11 chr11 118315241 118315397 -3528459 + L1MB8 LINE L1 5979 6141 -37 5 1487 772 252 44 171 chr11 118316036 118316509 -3527347 - RLTR11B LTR ERVK -26 427 15 5 1487 357 388 59 29 chr11 118316684 118316923 -3526933 + L1MEg LINE L1 731 976 -5108 5 1487 198 0 0 0 chr11 118317727 118317749 -3526107 + (TC)n Simple_repeat Simple_repeat 2 23 0 5 1487 228 35 0 0 chr11 118317749 118317777 -3526079 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1487 251 269 13 0 chr11 118317981 118318059 -3525797 + GA-rich Low_complexity Low_complexity 4 82 0 5 1487 423 56 0 0 chr11 118318061 118318115 -3525741 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1487 690 333 113 21 chr11 118318268 118318798 -3525058 + L1MB8 LINE L1 5546 6124 -54 5 1487 614 200 96 0 chr11 118318803 118318928 -3524928 - ID_B1 SINE B4 -6 218 82 5 1487 514 295 35 0 chr11 118318983 118319156 -3524700 + B4 SINE B4 1 179 -113 5 1487 307 311 8 69 chr11 118319331 118319462 -3524394 + B4A SINE B4 1 123 -169 5 1487 516 285 90 0 chr11 118319462 118319606 -3524250 + RSINE1 SINE B4 2 158 -7 5 1487 321 47 0 0 chr11 118319606 118319649 -3524207 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1487 1107 62 13 4 chr11 118319649 118319878 -3523978 + (TCTA)n Simple_repeat Simple_repeat 1 231 0 5 1487 650 127 31 12 chr11 118320069 118320229 -3523627 + (CA)n Simple_repeat Simple_repeat 2 164 0 5 1487 268 344 10 0 chr11 118320285 118320381 -3523475 + RSINE1 SINE B4 67 163 -2 5 1487 460 293 73 17 chr11 118320564 118320741 -3523115 + MER73 LTR ERVL 12 198 -446 5 1487 369 0 0 0 chr11 118320785 118320826 -3523030 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1487 252 0 0 0 chr11 118320826 118320853 -3523003 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1487 190 179 18 18 chr11 118320923 118320980 -3522876 + CT-rich Low_complexity Low_complexity 1 57 0 5 1487 459 320 95 33 chr11 118321037 118321313 -3522543 + MER73 LTR ERVL 339 662 -239 5 1487 760 203 123 15 chr11 118321694 118321889 -3521967 - B3 SINE B2 0 216 1 5 1487 261 0 0 0 chr11 118322276 118322305 -3521551 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1487 603 255 40 7 chr11 118322328 118322478 -3521378 + RMER10B LTR ERVL 244 398 0 5 1487 322 138 29 58 chr11 118322534 118322603 -3521253 + RMER5 LTR ERV1 51 117 -417 5 1487 675 248 24 24 chr11 118322897 118323062 -3520794 + RSINE1 SINE B4 1 165 0 5 1487 198 0 0 0 chr11 118323093 118323115 -3520741 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1487 290 209 29 43 chr11 118323789 118323859 -3519997 - MLT1H LTR MaLR -375 174 106 5 1487 270 355 21 0 chr11 118324192 118324285 -3519571 - LTR16B LTR ERVL -349 114 20 5 1487 669 281 0 27 chr11 118324829 118324979 -3518877 + RSINE1 SINE B4 1 146 -19 5 1487 270 0 0 0 chr11 118324987 118325017 -3518839 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1487 1066 58 49 12 chr11 118325166 118325521 -3518335 + (TCTA)n Simple_repeat Simple_repeat 1 368 0 5 1487 535 252 71 19 chr11 118325522 118325676 -3518180 - RSINE1 SINE B4 -1 164 3 5 1487 573 176 164 154 chr11 118325708 118325909 -3517947 - B3 SINE B2 -12 204 2 5 1487 1935 109 231 6 chr11 118325942 118326293 -3517563 + RLTR23 LTR ERV1 1 430 0 5 1487 418 240 79 16 chr11 118326361 118326488 -3517368 + B1F SINE Alu 2 136 -13 5 1487 183 80 0 0 chr11 118326490 118326515 -3517341 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 5 1487 415 350 75 57 chr11 118326594 118327033 -3516823 + L1M5 LINE L1 3060 3506 -2640 5 1487 517 280 14 14 chr11 118327490 118327635 -3516221 + B1_Mur2 SINE Alu 5 149 0 5 1487 947 218 82 135 chr11 118327736 118328113 -3515743 - MTE2a LTR MaLR -9 370 14 5 1487 449 184 0 0 chr11 118328498 118328574 -3515282 + RLTR16 LTR ERVK 1 76 -429 5 1487 885 90 104 0 chr11 118328577 118328711 -3515145 + B1_Mus1 SINE Alu 1 148 0 5 1487 1758 208 47 35 chr11 118328728 118329157 -3514699 + RLTR16 LTR ERVK 60 493 -12 5 1487 600 328 55 13 chr11 118329286 118329521 -3514335 + B4A SINE B4 48 292 0 5 1487 474 282 11 58 chr11 118329563 118329751 -3514105 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1487 851 150 13 20 chr11 118329876 118330026 -3513830 + B1_Mur1 SINE Alu 1 149 0 5 1487 932 206 114 21 chr11 118330098 118330291 -3513565 - B3 SINE B2 -5 211 1 5 1487 3396 43 2 2 chr11 118330415 118330811 -3513045 - MTA_Mm LTR MaLR 0 396 1 5 1487 309 109 0 0 chr11 118331188 118331234 -3512622 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1487 272 283 83 95 chr11 118331267 118331435 -3512421 - MER57A-int LTR ERV1 -166 6021 5856 5 1487 198 0 0 0 chr11 118331874 118331896 -3511960 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1487 308 336 121 0 chr11 118332031 118332171 -3511685 + Tigger5 DNA MER2_type 2137 2293 -113 5 1487 603 112 58 12 chr11 118332207 118332379 -3511477 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1487 379 120 82 6 chr11 118332407 118332566 -3511290 + (TG)n Simple_repeat Simple_repeat 2 172 0 5 1487 537 117 51 28 chr11 118332592 118332768 -3511088 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1487 21 0 0 0 chr11 118332880 118332901 -3510955 + AT_rich Low_complexity Low_complexity 1 21 0 5 1487 758 241 25 6 chr11 118333470 118333633 -3510223 - B3A SINE B2 -6 192 27 5 1487 1139 154 32 0 chr11 118333642 118333830 -3510026 - B2_Mm2 SINE B2 0 195 2 5 1487 438 298 135 14 chr11 118333878 118334086 -3509770 - B4A SINE B4 -59 233 1 5 1487 4426 127 81 19 chr11 118334345 118335138 -3508718 + RMER21B LTR ERV1 1 842 0 5 1487 2912 101 12 12 chr11 118335205 118335625 -3508231 - BGLII LTR ERVK 0 421 2 5 1487 1837 244 45 12 chr11 118335644 118336149 -3507707 - RMER5 LTR ERV1 -12 522 1 5 1487 527 190 25 12 chr11 118337596 118337815 -3506041 + Lx9 LINE L1 7385 7638 -6 5 1487 338 297 39 29 chr11 118339149 118339253 -3504603 + PB1D10 SINE Alu 6 110 -7 5 1487 322 210 0 16 chr11 118339282 118339345 -3504511 + ID4 SINE ID 22 83 0 5 1487 619 280 53 32 chr11 118339973 118340161 -3503695 + ID_B1 SINE B4 32 223 -1 5 1487 1271 34 0 0 chr11 118341001 118341148 -3502708 - B1_Mus2 SINE Alu 0 147 1 5 1487 359 261 54 0 chr11 118341453 118341545 -3502311 - B1F SINE Alu -7 142 46 5 1487 508 285 15 0 chr11 118341578 118341708 -3502148 - B4 SINE B4 -6 286 155 5 1487 1408 62 17 6 chr11 118341729 118341907 -3501949 - B2_Mm2 SINE B2 -14 181 2 5 1487 224 197 183 0 chr11 118341919 118341985 -3501871 - B4 SINE B4 -208 84 6 5 1487 3310 66 0 2 chr11 118341985 118342382 -3501474 + MTA_Mm LTR MaLR 1 396 0 5 1487 318 325 126 10 chr11 118342813 118343012 -3500844 - MER58A DNA MER1_type -2 222 1 5 1487 760 313 82 65 chr11 118344835 118345027 -3498829 - MTD LTR MaLR -12 407 205 5 1487 574 144 200 17 chr11 118345027 118345147 -3498709 - B1_Mur2 SINE Alu -7 142 1 5 1487 760 313 82 65 chr11 118345147 118345354 -3498502 - MTD LTR MaLR -215 204 1 5 1487 194 125 0 20 chr11 118352468 118352517 -3491339 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 5 1487 285 197 0 0 chr11 118354008 118354074 -3489782 + A-rich Low_complexity Low_complexity 1 66 0 5 1487 294 73 0 0 chr11 118354983 118355024 -3488832 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1487 597 28 0 0 chr11 118356861 118356932 -3486924 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 5 1488 288 0 0 0 chr11 118359165 118359197 -3484659 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1488 375 23 0 0 chr11 118359342 118359386 -3484470 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1488 1840 177 51 126 chr11 118361136 118361589 -3482267 + MTD LTR MaLR 1 419 0 6 1488 553 319 9 59 chr11 118362067 118362127 -3481729 - ID_B1 SINE B4 -9 215 164 6 1488 1277 47 0 0 chr11 118362127 118362275 -3481581 - B1_Mus1 SINE Alu 0 148 1 6 1488 553 319 9 59 chr11 118362275 118362434 -3481422 - ID_B1 SINE B4 -61 163 7 6 1488 192 77 0 0 chr11 118364909 118364935 -3478921 + (CGGG)n Simple_repeat Simple_repeat 1 26 0 6 1488 233 318 102 9 chr11 118368036 118368144 -3475712 + LTR16C LTR ERVL 344 461 -28 6 1488 619 205 150 25 chr11 118370499 118370772 -3473084 + RMER6B LTR ERVK 1 383 -78 6 1488 518 177 298 0 chr11 118370738 118370879 -3472977 - RMER6B LTR ERVK -276 185 3 6 1488 212 295 0 32 chr11 118376437 118376500 -3467356 + CT-rich Low_complexity Low_complexity 1 61 0 6 1488 537 58 0 0 chr11 118376593 118376662 -3467194 + (TCC)n Simple_repeat Simple_repeat 2 70 0 6 1488 333 0 0 0 chr11 118376662 118376699 -3467157 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1488 1222 62 0 0 chr11 118378884 118379030 -3464826 + B1_Mm SINE Alu 2 147 0 6 1488 219 103 0 0 chr11 118379033 118379072 -3464784 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1488 377 286 123 41 chr11 118379094 118379240 -3464616 - RSINE1 SINE B4 -5 160 3 6 1488 182 33 0 62 chr11 118380034 118380066 -3463790 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1488 228 347 117 45 chr11 118380992 118381146 -3462710 + MLT2B5 LTR ERVL 151 315 -402 6 1488 1466 230 24 18 chr11 118381015 118381351 -3462505 + MTEa LTR MaLR 41 378 -1 6 1488 948 270 63 96 chr11 118383023 118383355 -3460501 + MTD LTR MaLR 11 331 -88 6 1488 257 286 24 12 chr11 118383914 118383999 -3459857 - MIRb SINE MIR -119 149 64 6 1488 831 181 42 0 chr11 118384018 118384162 -3459694 - B1_Mur4 SINE Alu 0 150 1 6 1488 190 340 30 50 chr11 118384237 118384336 -3459520 + L3 LINE CR1 24 120 -4369 6 1488 339 320 19 0 chr11 118384370 118384473 -3459383 - MER63D DNA AcHobo -687 374 270 6 1488 517 335 46 28 chr11 118386112 118386330 -3457526 + Charlie4 DNA MER1_type 1740 1961 0 6 1488 225 351 153 35 chr11 118390977 118391231 -3452625 + ORR1D2 LTR MaLR 87 370 0 6 1488 758 152 0 6 chr11 118391517 118391676 -3452180 + (CA)n Simple_repeat Simple_repeat 1 158 0 6 1488 191 346 42 0 chr11 118393501 118393597 -3450259 - MIRc SINE MIR -55 153 50 6 1488 235 299 0 78 chr11 118393812 118393928 -3449928 - MIRb SINE MIR -46 222 116 6 1488 362 290 43 0 chr11 118394051 118394144 -3449712 + B4A SINE B4 47 143 -149 6 1488 321 26 0 0 chr11 118395532 118395570 -3448286 + (GGA)n Simple_repeat Simple_repeat 3 40 0 6 1488 718 114 245 39 chr11 118400228 118400383 -3443473 + B2_Mm2 SINE B2 1 187 -8 6 1488 213 368 48 20 chr11 118400807 118400954 -3442902 + L3b LINE CR1 210 360 -122 6 1488 395 259 89 0 chr11 118403803 118403915 -3439941 - PB1 SINE Alu -2 125 4 6 1488 508 266 149 75 chr11 118404471 118404739 -3439117 + B4A SINE B4 5 292 0 6 1488 307 201 19 32 chr11 118404770 118404924 -3438932 + (CA)n Simple_repeat Simple_repeat 2 153 0 6 1488 267 133 0 0 chr11 118404926 118404971 -3438885 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 6 1488 642 113 0 0 chr11 118404971 118405068 -3438788 + (CA)n Simple_repeat Simple_repeat 1 97 0 6 1488 218 314 81 0 chr11 118405179 118405265 -3438591 + MIRm SINE MIR 168 260 -16 6 1488 293 328 39 31 chr11 118407207 118407336 -3436520 + MER58A DNA MER1_type 46 175 -49 6 1488 918 277 14 39 chr11 118408516 118408801 -3435055 + B4A SINE B4 1 278 -14 6 1488 181 191 125 21 chr11 118409958 118410006 -3433850 + L4 LINE RTE 811 863 -1166 6 1488 258 32 0 0 chr11 118410156 118410187 -3433669 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1488 238 213 0 62 chr11 118412587 118412667 -3431189 + G-rich Low_complexity Low_complexity 4 78 0 6 1488 558 0 0 0 chr11 118414155 118414217 -3429639 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1488 426 39 0 0 chr11 118415283 118415335 -3428521 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1488 299 296 25 42 chr11 118417245 118417365 -3426491 - MamRep4096 DNA hAT? -288 138 21 6 1488 206 0 69 0 chr11 118417846 118417875 -3425981 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 6 1488 1246 54 0 0 chr11 118417878 118418025 -3425831 - B1_Mus2 SINE Alu 0 147 1 6 1488 231 36 0 0 chr11 118419110 118419138 -3424718 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1488 342 0 0 0 chr11 118419232 118419270 -3424586 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1488 188 280 0 0 chr11 118419479 118419529 -3424327 - L2a LINE L2 -41 3385 3336 6 1488 261 75 0 0 chr11 118419829 118419869 -3423987 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1488 523 335 82 25 chr11 118420851 118421067 -3422789 + MER33 DNA MER1_type 17 249 -75 6 1488 450 0 0 0 chr11 118421067 118421117 -3422739 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1488 523 335 82 25 chr11 118421117 118421145 -3422711 + MER33 DNA MER1_type 250 275 -49 6 1488 540 225 80 9 chr11 118421173 118421285 -3422571 - PB1D7 SINE Alu 0 120 1 6 1488 259 300 142 0 chr11 118422132 118422252 -3421604 + MER33 DNA MER1_type 184 320 -4 6 1488 364 268 179 80 chr11 118422403 118422654 -3421202 - B4 SINE B4 -15 277 2 6 1488 729 189 0 0 chr11 118423195 118423359 -3420497 + (CA)n Simple_repeat Simple_repeat 2 165 0 6 1488 214 282 56 0 chr11 118423658 118423729 -3420127 + L2c LINE L2 3254 3328 -59 6 1488 242 250 14 14 chr11 118425173 118425242 -3418614 + GA-rich Low_complexity Low_complexity 3 71 0 6 1488 31 76 0 0 chr11 118430794 118430860 -3412996 + GC_rich Low_complexity Low_complexity 1 66 0 6 1488 198 191 0 0 chr11 118431291 118431333 -3412523 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1488 657 0 0 0 chr11 118436552 118436625 -3407231 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 1488 266 337 11 0 chr11 118437207 118437296 -3406560 - L3b LINE CR1 -132 350 261 6 1488 727 308 0 0 chr11 118440597 118440758 -3403098 + B3 SINE B2 1 161 -55 6 1488 459 0 0 0 chr11 118440758 118440809 -3403047 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1488 727 323 32 639 chr11 118440809 118440843 -3403013 + B3 SINE B2 157 191 -4 6 1488 558 306 130 17 chr11 118440973 118441212 -3402644 + B4A SINE B4 1 266 -26 6 1488 714 55 0 0 chr11 118441450 118441541 -3402315 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 6 1488 351 0 0 0 chr11 118441541 118441579 -3402277 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 6 1488 369 0 0 0 chr11 118442307 118442348 -3401508 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1488 288 158 18 0 chr11 118442743 118442800 -3401056 - L2a LINE L2 -1 3425 3368 6 1488 196 200 59 20 chr11 118444071 118444122 -3399734 - MIRc SINE MIR -52 216 164 6 1488 467 288 41 47 chr11 118444823 118444994 -3398862 - MER3 DNA MER1_type -25 184 15 6 1488 21 0 0 0 chr11 118446561 118446582 -3397274 + AT_rich Low_complexity Low_complexity 1 21 0 6 1488 532 163 41 0 chr11 118449349 118449447 -3394409 - URR1A DNA MER1_type -43 183 82 6 1488 271 297 101 32 chr11 118449530 118449691 -3394165 + ERVL-E-int LTR ERVL 2895 3096 -2618 6 1488 296 315 0 11 chr11 118452152 118452245 -3391611 + CT-rich Low_complexity Low_complexity 3 94 0 6 1488 497 168 70 70 chr11 118452657 118452772 -3391084 - PB1D10 SINE Alu -1 116 2 6 1488 355 244 0 0 chr11 118457331 118457409 -3386447 - MIRc SINE MIR -121 147 70 6 1488 789 117 0 0 chr11 118457913 118458041 -3385815 + (TCCA)n Simple_repeat Simple_repeat 1 128 0 6 1488 219 372 0 24 chr11 118460912 118461080 -3382776 + (CA)n Simple_repeat Simple_repeat 1 164 0 6 1488 330 184 0 0 chr11 118461739 118461815 -3382041 + C-rich Low_complexity Low_complexity 4 79 0 6 1488 238 355 11 0 chr11 118462586 118462679 -3381177 - L3 LINE CR1 -895 3594 3501 6 1488 245 182 0 76 chr11 118463499 118463671 -3380185 + G-rich Low_complexity Low_complexity 2 160 0 6 1488 268 187 0 66 chr11 118463682 118463865 -3379991 + G-rich Low_complexity Low_complexity 2 172 0 6 1488 297 260 0 55 chr11 118463876 118463986 -3379870 + G-rich Low_complexity Low_complexity 2 105 0 6 1488 610 308 16 5 chr11 118464114 118464300 -3379556 + MTE-int LTR MaLR 1351 1538 -42 6 1488 531 82 0 0 chr11 118465111 118465184 -3378672 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1488 414 0 0 0 chr11 118465184 118465229 -3378627 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1488 423 0 0 0 chr11 118465440 118465487 -3378369 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1488 583 144 25 8 chr11 118465949 118466068 -3377788 + C-rich Low_complexity Low_complexity 4 124 0 6 1488 269 288 122 88 chr11 118466811 118466948 -3376908 + L1MEc LINE L1 716 835 -5565 6 1488 1278 223 0 0 chr11 118466948 118467159 -3376697 + B3 SINE B2 1 211 -5 6 1488 269 288 122 88 chr11 118467159 118467421 -3376435 + L1MEc LINE L1 836 1129 -5271 6 1488 529 269 163 68 chr11 118467471 118467766 -3376090 + Lx9 LINE L1 7001 7323 -321 6 1488 332 247 20 79 chr11 118467767 118467868 -3375988 + RSINE1 SINE B4 54 148 -17 6 1488 198 103 0 0 chr11 118467885 118467914 -3375942 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1488 257 108 0 0 chr11 118468141 118468178 -3375678 + L1M4 LINE L1 4276 4312 -1834 6 1488 226 269 41 41 chr11 118468433 118468451 -3375405 + L1M4 LINE L1 4600 4617 -1529 6 1488 254 29 29 0 chr11 118468451 118468486 -3375370 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1488 226 269 41 41 chr11 118468486 118468564 -3375292 + L1M4 LINE L1 4618 4696 -1450 6 1488 439 116 14 0 chr11 118468720 118468789 -3375067 + B1_Mur2 SINE Alu 73 142 -7 6 1488 777 195 32 0 chr11 118468807 118468961 -3374895 - RSINE1 SINE B4 -4 161 3 6 1488 518 232 9 26 chr11 118469100 118469215 -3374641 - PB1D10 SINE Alu 0 117 5 6 1488 741 280 69 19 chr11 118469735 118469997 -3373859 + B4A SINE B4 1 275 -17 6 1488 916 244 54 0 chr11 118470207 118470412 -3373444 - B3 SINE B2 0 216 1 6 1488 792 236 34 24 chr11 118470418 118470626 -3373230 - ID_B1 SINE B4 -6 218 9 6 1488 230 344 8 54 chr11 118471229 118471358 -3372498 - LTR88a LTR Gypsy -527 289 167 6 1488 185 0 0 39 chr11 118471594 118471620 -3372236 + (AGGGGG)n Simple_repeat Simple_repeat 2 26 0 7 1488 201 129 0 0 chr11 118471793 118471824 -3372032 + (C)n Simple_repeat Simple_repeat 1 31 0 7 1488 353 179 12 0 chr11 118472265 118472349 -3371507 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 1488 686 284 15 10 chr11 118472607 118472806 -3371050 - B3 SINE B2 0 216 17 7 1488 398 256 116 116 chr11 118472818 118472909 -3370947 + B3 SINE B2 45 155 -61 7 1488 2114 133 112 6 chr11 118472909 118473265 -3370591 + ORR1B1 LTR MaLR 1 394 0 7 1488 398 256 116 116 chr11 118473265 118473345 -3370511 + B3 SINE B2 156 216 0 7 1488 234 200 0 0 chr11 118473351 118473396 -3370460 - B3A SINE B2 -153 45 1 7 1488 434 18 18 0 chr11 118474077 118474132 -3369724 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1488 246 252 34 59 chr11 118475685 118475803 -3368053 - Lx3_Mus LINE L1 -32 6977 6863 7 1488 1438 93 0 20 chr11 118475968 118476166 -3367690 + B2_Mm2 SINE B2 1 194 -1 7 1488 307 263 10 31 chr11 118477033 118477131 -3366725 + G-rich Low_complexity Low_complexity 2 97 0 7 1488 291 327 27 9 chr11 118477464 118477575 -3366281 - MIR SINE MIR -94 168 56 7 1488 501 292 167 46 chr11 118478206 118478481 -3365375 + MLT1C LTR MaLR 1 311 -194 7 1488 415 311 148 90 chr11 118479139 118479471 -3364385 + ORR1E LTR MaLR 4 354 -5 7 1488 337 298 94 24 chr11 118479549 118479733 -3364123 - L1MB3 LINE L1 -254 5929 5731 7 1488 257 281 36 24 chr11 118479740 118479824 -3364032 + L4 LINE RTE 1752 1836 -193 7 1488 333 288 0 0 chr11 118480583 118480656 -3363200 + ID4_ SINE ID 1 73 -10 7 1488 357 24 0 0 chr11 118480657 118480699 -3363157 + (CAGA)n Simple_repeat Simple_repeat 4 45 0 7 1488 885 154 0 0 chr11 118481301 118481549 -3362307 + (TG)n Simple_repeat Simple_repeat 1 248 0 7 1488 997 277 162 0 chr11 118481922 118482243 -3361613 - MTEa LTR MaLR -6 373 1 7 1488 496 329 85 59 chr11 118482906 118483142 -3360714 + MER74A LTR ERVL 190 431 -127 7 1488 755 273 44 0 chr11 118483257 118483440 -3360416 + B4 SINE B4 7 197 -95 7 1488 198 0 0 0 chr11 118483452 118483474 -3360382 + (TGG)n Simple_repeat Simple_repeat 2 23 0 7 1488 2123 84 36 0 chr11 118484475 118484783 -3359073 - ORR1A2 LTR MaLR -8 319 1 7 1488 399 283 110 13 chr11 118486908 118487062 -3356794 + MLT1D LTR MaLR 254 422 -83 7 1489 23 0 0 0 chr11 118489628 118489651 -3354205 + AT_rich Low_complexity Low_complexity 1 23 0 7 1489 225 311 38 83 chr11 118492131 118492264 -3351592 - MIRb SINE MIR -31 237 111 7 1489 306 225 20 119 chr11 118493003 118493104 -3350752 + L2a LINE L2 3334 3424 -2 7 1489 222 320 13 13 chr11 118493224 118493300 -3350556 + CT-rich Low_complexity Low_complexity 3 78 0 7 1489 465 265 0 0 chr11 118493880 118494050 -3349806 + (TG)n Simple_repeat Simple_repeat 2 171 0 7 1489 360 80 0 0 chr11 118494063 118494113 -3349743 - HAL1-3A_ME LINE L1 -840 2018 1969 7 1489 247 330 103 46 chr11 118495767 118495961 -3347895 + MLT1B LTR MaLR 164 368 -22 7 1489 219 69 0 0 chr11 118496429 118496458 -3347398 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1489 305 229 0 20 chr11 118500073 118500220 -3343636 + (CA)n Simple_repeat Simple_repeat 1 144 0 1 1489 186 193 0 0 chr11 118500250 118500307 -3343549 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1489 395 264 0 0 chr11 118500350 118500575 -3343281 + (CA)n Simple_repeat Simple_repeat 1 225 0 1 1489 449 371 12 12 chr11 118501858 118502019 -3341837 - MER2 DNA MER2_type -30 315 155 2 1489 289 296 0 48 chr11 118502034 118502137 -3341719 + B4A SINE B4 1 98 -194 3 1489 660 240 83 68 chr11 118502137 118502329 -3341527 + B3A SINE B2 3 197 -1 4 1489 449 337 35 43 chr11 118502439 118502487 -3341369 + B4A SINE B4 80 130 -162 3 1489 396 0 0 0 chr11 118502487 118502531 -3341325 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1489 449 301 35 40 chr11 118502531 118502679 -3341177 + B4A SINE B4 131 274 -18 3 1489 254 350 28 70 chr11 118503793 118503935 -3339921 + MIRb SINE MIR 63 196 -72 6 1489 419 52 0 17 chr11 118503935 118503994 -3339862 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1489 187 346 27 82 chr11 118503994 118504018 -3339838 + MIR SINE MIR 196 219 -43 6 1489 404 145 24 0 chr11 118504694 118504777 -3339079 + CT-rich Low_complexity Low_complexity 1 85 0 8 1489 182 303 32 63 chr11 118505041 118505136 -3338720 + L2c LINE L2 3289 3380 -7 9 1489 319 284 26 45 chr11 118505689 118505761 -3338095 - MTE2a LTR MaLR 0 379 310 1 1489 1217 61 0 0 chr11 118505761 118505908 -3337948 + B1_Mm SINE Alu 1 147 0 1 1489 319 284 26 45 chr11 118505908 118505990 -3337866 - MTE2a LTR MaLR -70 309 228 1 1489 1814 200 192 17 chr11 118506088 118506551 -3337305 + RMER15 LTR ERVL 27 570 -5 1 1489 789 268 90 20 chr11 118506566 118506810 -3337046 - MTE2a LTR MaLR -116 263 3 1 1489 1002 287 111 22 chr11 118508466 118508918 -3334938 + Lx9 LINE L1 7117 7608 -36 1 1489 258 180 0 47 chr11 118509103 118509167 -3334689 + RMER15 LTR ERVL 361 421 -154 1 1489 344 264 140 21 chr11 118509259 118509440 -3334416 + B4 SINE B4 78 270 -22 1 1489 935 88 7 0 chr11 118509466 118509614 -3334242 + (TC)n Simple_repeat Simple_repeat 1 149 0 1 1489 405 0 0 0 chr11 118511122 118511167 -3332689 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1489 243 0 0 0 chr11 118511167 118511193 -3332663 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1489 261 283 0 0 chr11 118511220 118511333 -3332523 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1489 455 229 0 7 chr11 118511361 118511506 -3332350 + (TG)n Simple_repeat Simple_repeat 2 145 0 1 1489 207 0 0 0 chr11 118512310 118512333 -3331523 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1489 621 287 116 55 chr11 118515994 118516304 -3327552 + ORR1E LTR MaLR 18 346 -13 2 1489 793 254 75 31 chr11 118518168 118518395 -3325461 + B4 SINE B4 7 243 -49 2 1489 459 0 0 0 chr11 118518428 118518479 -3325377 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1489 181 184 61 0 chr11 118521262 118521311 -3322545 + L3 LINE CR1 4102 4153 -336 2 1489 185 174 58 0 chr11 118522873 118522942 -3320914 + CT-rich Low_complexity Low_complexity 3 75 0 2 1489 315 0 0 0 chr11 118523027 118523062 -3320794 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 1489 324 0 0 0 chr11 118523584 118523620 -3320236 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1489 627 278 138 31 chr11 118524715 118525097 -3318759 + MLT1C LTR MaLR 43 451 -16 2 1489 412 352 30 30 chr11 118525890 118526092 -3317764 + B4 SINE B4 4 205 -87 2 1489 409 177 80 25 chr11 118526181 118526343 -3317513 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 1489 265 242 110 0 chr11 118526397 118526488 -3317368 - Charlie12 DNA MER1_type -2719 154 54 3 1489 262 214 14 0 chr11 118526437 118526507 -3317349 + RMER30 DNA MER1_type 98 168 -34 3 1489 184 237 0 0 chr11 118527933 118527971 -3315885 - L2 LINE L2 -1826 1593 1556 3 1489 972 142 0 26 chr11 118528309 118528461 -3315395 + B1_Mus1 SINE Alu 1 148 0 3 1489 689 278 53 0 chr11 118528782 118528950 -3314906 + B3A SINE B2 2 179 -19 3 1489 453 19 0 0 chr11 118528950 118529004 -3314852 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1489 689 292 45 66 chr11 118529004 118529044 -3314812 + B3A SINE B2 162 197 -1 3 1489 211 349 11 11 chr11 118530415 118530502 -3313354 + MIR SINE MIR 7 93 -169 3 1489 537 16 0 0 chr11 118532218 118532280 -3311576 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1489 272 296 67 22 chr11 118532820 118532955 -3310901 + MLT1A0 LTR MaLR 1 141 -224 3 1489 180 191 82 68 chr11 118534597 118534670 -3309186 + MIRc SINE MIR 30 103 -165 4 1489 596 250 12 56 chr11 118536449 118536610 -3307246 - RSINE1 SINE B4 0 165 12 4 1489 755 272 25 15 chr11 118536790 118536988 -3306868 - B4A SINE B4 -92 200 1 4 1489 269 282 28 0 chr11 118537093 118537164 -3306692 - MER2 DNA MER2_type -271 74 2 4 1489 682 186 0 0 chr11 118537355 118537473 -3306383 - ID_B1 SINE B4 0 224 107 4 1489 411 155 0 0 chr11 118538058 118538161 -3305695 + CT-rich Low_complexity Low_complexity 1 103 0 4 1489 201 74 0 0 chr11 118538161 118538188 -3305668 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1489 541 248 19 39 chr11 118538214 118538369 -3305487 - B4A SINE B4 -56 236 85 4 1489 22 0 0 0 chr11 118538376 118538398 -3305458 + AT_rich Low_complexity Low_complexity 1 22 0 4 1489 279 0 0 0 chr11 118538520 118538551 -3305305 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4 1489 322 281 42 0 chr11 118538668 118538764 -3305092 + PB1D10 SINE Alu 1 100 -17 5 1489 903 160 14 7 chr11 118539021 118539166 -3304690 + B1_Mur1 SINE Alu 2 147 -2 5 1489 577 220 34 0 chr11 118540525 118540643 -3303213 - RSINE1 SINE B4 -18 147 26 5 1489 232 346 37 0 chr11 118540677 118540758 -3303098 - B4 SINE B4 -124 168 85 5 1489 307 277 15 51 chr11 118542645 118542782 -3301074 + (CATA)n Simple_repeat Simple_repeat 2 133 0 5 1489 208 252 0 39 chr11 118542782 118542885 -3300971 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 5 1489 439 232 20 13 chr11 118543802 118543950 -3299906 + ORR1D2 LTR MaLR 212 374 0 5 1489 616 198 4 33 chr11 118545355 118545638 -3298218 + GA-rich Low_complexity Low_complexity 1 274 0 5 1489 593 315 37 140 chr11 118548005 118548326 -3295530 - B4A SINE B4 -3 289 2 5 1489 216 86 0 0 chr11 118549064 118549099 -3294757 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 5 1489 705 174 0 0 chr11 118549261 118549393 -3294463 + GA-rich Low_complexity Low_complexity 3 134 0 6 1489 219 103 0 0 chr11 118549601 118549640 -3294216 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1489 225 0 0 0 chr11 118553394 118553419 -3290437 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 1489 396 0 0 0 chr11 118553728 118553772 -3290084 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1489 211 216 0 0 chr11 118554053 118554090 -3289766 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1489 204 276 45 82 chr11 118554819 118554953 -3288903 + MIRb SINE MIR 114 242 -26 6 1489 318 67 0 0 chr11 118555674 118555719 -3288137 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1489 247 65 43 0 chr11 118557044 118557090 -3286766 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1489 199 330 51 17 chr11 118558014 118558131 -3285725 - MER5A DNA MER1_type -36 153 33 6 1489 252 291 122 36 chr11 118559328 118559467 -3284389 - RLTR22_Mur LTR ERVK -389 1459 1309 6 1489 227 341 58 29 chr11 118559510 118559649 -3284207 - RLTR22_Mus LTR ERVK -407 1401 1259 7 1489 243 88 0 0 chr11 118559865 118559899 -3283957 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1489 214 171 0 0 chr11 118561929 118561964 -3281892 + GA-rich Low_complexity Low_complexity 2 36 0 7 1489 1214 67 0 6 chr11 118561976 118562142 -3281714 + (GGAGA)n Simple_repeat Simple_repeat 2 166 0 7 1489 682 316 182 19 chr11 118562230 118562704 -3281152 + L1MA6 LINE L1 5750 6300 0 7 1489 270 0 0 0 chr11 118562725 118562755 -3281101 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 7 1489 301 274 48 0 chr11 118562759 118562843 -3281013 + B3 SINE B2 105 192 -24 7 1489 1859 156 155 3 chr11 118563151 118563493 -3280363 + ORR1B1 LTR MaLR 1 394 0 7 1489 239 249 63 153 chr11 118565467 118565616 -3278240 + MTEa LTR MaLR 166 307 -72 7 1489 215 61 30 0 chr11 118565616 118565649 -3278207 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1489 239 248 61 154 chr11 118565649 118565701 -3278155 + MTEa LTR MaLR 290 365 -14 7 1489 300 302 65 0 chr11 118565733 118565872 -3277984 - L1MC1 LINE L1 -234 6099 5952 8 1489 884 253 5 0 chr11 118566538 118566732 -3277124 + MTEa LTR MaLR 2 196 -183 8 1489 325 155 11 35 chr11 118567319 118567406 -3276450 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1489 354 173 0 0 chr11 118567469 118567544 -3276312 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1489 1142 260 85 6 chr11 118567715 118568055 -3275801 + MTEb LTR MaLR 4 370 -9 8 1489 225 191 0 96 chr11 118568074 118568126 -3275730 + B1F2 SINE Alu 12 58 -91 8 1489 412 219 43 87 chr11 118568151 118568242 -3275614 + B1F2 SINE Alu 40 129 -20 8 1489 1438 94 0 5 chr11 118568242 118568435 -3275421 - B2_Mm2 SINE B2 -2 193 2 8 1489 412 219 43 87 chr11 118568435 118568458 -3275398 + B1F2 SINE Alu 130 149 0 8 1489 2094 159 41 58 chr11 118568936 118569330 -3274526 + ORR1B1 LTR MaLR 5 391 -3 8 1489 318 354 73 6 chr11 118569750 118569929 -3273927 + MER53 DNA hAT 1 191 -2 8 1489 405 39 0 0 chr11 118570038 118570089 -3273767 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1489 775 208 6 23 chr11 118570107 118570279 -3273577 - ORR1C1 LTR MaLR -208 170 2 8 1489 1336 218 84 79 chr11 118570558 118570712 -3273144 + ORR1C2 LTR MaLR 1 171 -213 9 1489 414 0 0 0 chr11 118570712 118570758 -3273098 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1489 1336 218 84 79 chr11 118570758 118570982 -3272874 + ORR1C2 LTR MaLR 172 380 -4 9 1489 549 283 85 54 chr11 118571794 118572018 -3271838 + B4 SINE B4 40 270 -22 9 1489 372 128 0 0 chr11 118572022 118572100 -3271756 + (TC)n Simple_repeat Simple_repeat 1 78 0 9 1489 300 157 20 0 chr11 118572100 118572151 -3271705 + HAL1-3A_ME LINE L1 1977 2028 -830 9 1489 248 189 14 0 chr11 118572151 118572225 -3271631 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1489 580 186 11 0 chr11 118572238 118572415 -3271441 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1489 610 198 286 34 chr11 118573041 118573219 -3270637 + ID_B1 SINE B4 2 224 0 9 1489 186 167 0 0 chr11 118577673 118577709 -3266147 + C-rich Low_complexity Low_complexity 1 36 0 9 1489 689 222 155 11 chr11 118578456 118578643 -3265213 - B3 SINE B2 0 216 3 9 1489 2422 143 58 5 chr11 118579567 118579967 -3263889 + MTC LTR MaLR 1 421 0 9 1489 275 248 73 82 chr11 118580370 118580472 -3263384 - MTEb LTR MaLR -18 361 261 1 1489 2006 96 14 1 chr11 118580472 118580830 -3263026 + ORR1A2 LTR MaLR 1 386 -8 1 1489 692 260 93 77 chr11 118581546 118581792 -3262064 + ORR1E LTR MaLR 3 252 -107 1 1489 235 68 111 22 chr11 118581850 118581895 -3261961 - ORR1A2 LTR MaLR -276 51 3 1 1489 244 359 49 54 chr11 118582189 118582413 -3261443 - ORR1E LTR MaLR -43 316 94 1 1489 2135 119 68 0 chr11 118583131 118583484 -3260372 + RMER17B LTR ERVK 1 377 -581 1 1489 1812 200 7 54 chr11 118583476 118583920 -3259936 + RMER17B LTR ERVK 536 958 0 1 1489 220 246 52 17 chr11 118585363 118585421 -3258435 + MIR SINE MIR 80 139 -123 1 1489 264 380 6 0 chr11 118587111 118587282 -3256574 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1489 349 271 115 8 chr11 118587807 118587937 -3255919 - B4A SINE B4 -6 286 143 1 1489 365 294 106 6 chr11 118587971 118588132 -3255724 - B4A SINE B4 -102 190 14 1 1489 336 192 29 0 chr11 118588955 118589059 -3254797 + G-rich Low_complexity Low_complexity 3 109 0 1 1489 244 322 46 0 chr11 118590358 118590436 -3253420 - MER33 DNA MER1_type 0 324 243 1 1489 347 228 147 10 chr11 118590436 118590538 -3253318 + PB1D10 SINE Alu 1 116 -1 1 1489 380 247 21 0 chr11 118591115 118591212 -3252644 - BC1_Mm scRNA scRNA -53 99 1 1 1489 1127 205 178 12 chr11 118591592 118591913 -3251943 - ORR1D1 LTR MaLR 0 374 1 1 1489 468 273 117 0 chr11 118592811 118592939 -3250917 + RSINE1 SINE B4 8 150 -15 1 1489 257 301 40 20 chr11 118595934 118596083 -3247773 + (TATG)n Simple_repeat Simple_repeat 4 155 0 1 1489 255 297 11 59 chr11 118596148 118596334 -3247522 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 1 1489 198 71 0 0 chr11 118596447 118596475 -3247381 + (CATA)n Simple_repeat Simple_repeat 4 31 0 1 1489 222 37 0 0 chr11 118597986 118598013 -3245843 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1489 32 0 0 0 chr11 118599004 118599036 -3244820 + AT_rich Low_complexity Low_complexity 1 32 0 1 1489 651 223 50 0 chr11 118599042 118599181 -3244675 - B1_Mur2 SINE Alu -1 148 3 1 1489 279 0 0 0 chr11 118599414 118599445 -3244411 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1489 297 0 0 0 chr11 118599654 118599687 -3244169 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1489 210 322 86 33 chr11 118599898 118600049 -3243807 + MIRb SINE MIR 14 172 -96 1 1489 411 310 125 23 chr11 118600829 118601159 -3242697 + MLT1I LTR MaLR 13 385 -26 1 1489 377 178 68 0 chr11 118602849 118602922 -3240934 + MTD LTR MaLR 1 78 -343 1 1489 400 165 22 56 chr11 118602911 118603001 -3240855 + MT2B LTR ERVL 178 264 -337 1 1489 831 38 0 0 chr11 118602925 118603030 -3240826 + B1_Mus2 SINE Alu 37 141 -6 1 1489 1057 210 170 9 chr11 118603008 118603032 -3240824 + MTD LTR MaLR 51 72 -347 1 1489 405 0 0 0 chr11 118603032 118603077 -3240779 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1489 1057 210 170 9 chr11 118603077 118603369 -3240487 + MTD LTR MaLR 73 418 -1 1 1489 252 86 0 0 chr11 118603401 118603436 -3240420 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 1 1489 1039 122 0 16 chr11 118603459 118603642 -3240214 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 1 1489 417 86 0 0 chr11 118604423 118604481 -3239375 + (CAAT)n Simple_repeat Simple_repeat 2 59 0 1 1489 264 179 0 0 chr11 118604856 118604934 -3238922 + (CCCCAG)n Simple_repeat Simple_repeat 4 81 0 1 1489 477 269 21 52 chr11 118605172 118605412 -3238444 - Tigger7 DNA MER2_type -32 2459 2248 1 1489 260 314 167 44 chr11 118607362 118607679 -3236177 - L1ME2z LINE L1 -178 6266 5911 1 1489 420 71 0 0 chr11 118607897 118607953 -3235903 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1 1489 459 35 0 0 chr11 118607985 118608042 -3235814 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1489 300 250 14 27 chr11 118608043 118608117 -3235739 - RSINE1 SINE B4 -89 76 4 1 1489 336 64 0 0 chr11 118609629 118609676 -3234180 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1489 234 154 0 0 chr11 118609779 118609818 -3234038 - L1MB5 LINE L1 -8 6166 6128 1 1489 282 221 78 0 chr11 118609818 118609895 -3233961 - L1M4 LINE L1 -619 5559 5477 1 1489 258 81 0 0 chr11 118610450 118610487 -3233369 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1 1489 410 279 26 13 chr11 118610592 118610748 -3233108 + (TG)n Simple_repeat Simple_repeat 2 159 0 1 1489 210 300 18 35 chr11 118610849 118610963 -3232893 + (TATG)n Simple_repeat Simple_repeat 3 114 0 1 1489 874 177 114 5 chr11 118610985 118611178 -3232678 + ORR1D2 LTR MaLR 157 370 0 1 1489 212 250 57 16 chr11 118611187 118611309 -3232547 + (TATG)n Simple_repeat Simple_repeat 1 127 0 1 1489 348 229 0 0 chr11 118611333 118611416 -3232440 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1489 317 293 22 44 chr11 118611768 118611950 -3231906 + (TATG)n Simple_repeat Simple_repeat 1 178 0 1 1489 361 293 5 60 chr11 118611921 118612106 -3231750 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1 1489 1359 264 57 13 chr11 118612711 118613098 -3230758 - BGLII_B LTR ERVK -21 420 17 1 1489 188 122 24 0 chr11 118613654 118613695 -3230161 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 1 1489 222 242 0 31 chr11 118614690 118614754 -3229102 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1489 1195 229 24 21 chr11 118615084 118615374 -3228482 - B4 SINE B4 0 292 2 1 1489 326 204 9 0 chr11 118615524 118615632 -3228224 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1489 252 246 15 15 chr11 118616872 118616938 -3226918 + (CATG)n Simple_repeat Simple_repeat 1 66 0 1 1489 556 356 109 30 chr11 118617710 118618150 -3225706 + MER77 LTR ERVL 130 604 -3 1 1489 831 204 0 0 chr11 118619253 118619483 -3224373 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 186 201 325 113 39 chr11 118620154 118620490 -3223366 + L2 LINE L2 2323 2683 -736 1 1490 360 0 0 0 chr11 118621585 118621625 -3222231 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 1 1490 276 185 0 0 chr11 118621986 118622040 -3221816 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1490 1359 222 33 79 chr11 118622617 118622901 -3220955 + ORR1D1 LTR MaLR 1 270 -104 1 1490 3044 45 64 3 chr11 118622901 118623276 -3220580 + MTB LTR MaLR 1 398 -2 1 1490 1359 222 33 79 chr11 118623276 118623383 -3220473 + ORR1D1 LTR MaLR 271 373 -1 1 1490 287 278 30 30 chr11 118624932 118625032 -3218824 + MER82 DNA MER2_type 39 138 -515 1 1490 1112 283 108 39 chr11 118625085 118625549 -3218307 - L1MB3 LINE L1 -65 6118 5623 1 1490 235 241 0 33 chr11 118626142 118626161 -3217695 - MTEa LTR MaLR -308 71 53 1 1490 729 252 54 58 chr11 118626161 118626384 -3217472 - ID_B1 SINE B4 -1 223 2 1 1490 235 241 0 33 chr11 118626384 118626424 -3217432 - MTEa LTR MaLR -327 52 14 1 1490 371 253 125 52 chr11 118626573 118626765 -3217091 - ORR1E LTR MaLR -109 250 45 1 1490 537 275 34 47 chr11 118627301 118627450 -3216406 + RSINE1 SINE B4 3 149 -16 1 1490 628 332 127 33 chr11 118627653 118628077 -3215779 + MER82 DNA MER2_type 182 645 -8 1 1490 962 175 0 24 chr11 118629498 118629835 -3214021 + CT-rich Low_complexity Low_complexity 1 329 0 1 1490 645 256 31 25 chr11 118629835 118630031 -3213825 - ID_B1 SINE B4 -1 223 27 1 1490 280 340 30 25 chr11 118630074 118630282 -3213574 + MIR SINE MIR 8 219 -49 1 1490 735 247 132 24 chr11 118631351 118631449 -3212407 + B4A SINE B4 1 108 -184 1 1490 369 0 0 0 chr11 118631449 118631490 -3212366 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 1490 735 247 132 24 chr11 118631490 118631640 -3212216 + B4A SINE B4 109 275 -17 1 1490 349 115 51 34 chr11 118631700 118631817 -3212039 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 1 1490 486 49 0 0 chr11 118632091 118632152 -3211704 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1490 249 108 0 0 chr11 118632695 118632732 -3211124 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1490 7593 91 8 18 chr11 118635720 118636784 -3207072 + Lx4A LINE L1 6006 7058 0 1 1490 24 0 0 0 chr11 118636798 118636822 -3207034 + AT_rich Low_complexity Low_complexity 1 24 0 1 1490 24 32 0 0 chr11 118636832 118636863 -3206993 + AT_rich Low_complexity Low_complexity 1 31 0 1 1490 741 321 87 49 chr11 118637126 118637351 -3206505 + MT2A LTR ERVL 2 227 -306 1 1490 204 40 0 0 chr11 118637351 118637376 -3206480 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1 1490 741 321 87 49 chr11 118637376 118637517 -3206339 + MT2A LTR ERVL 228 381 -152 1 1490 306 348 73 22 chr11 118637860 118638092 -3205764 - L1MB5 LINE L1 -267 5907 5664 1 1490 265 348 26 9 chr11 118639242 118639358 -3204498 - MamRep4096 DNA hAT? -305 121 4 1 1490 223 233 62 36 chr11 118639497 118639589 -3204267 - MIR SINE MIR -95 167 82 1 1490 234 292 0 14 chr11 118639713 118639786 -3204070 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 1 1490 624 281 74 55 chr11 118639805 118640076 -3203780 - B4A SINE B4 -12 280 5 1 1490 618 224 23 114 chr11 118640172 118640332 -3203524 + RSINE1 SINE B4 6 150 -15 1 1490 342 0 0 0 chr11 118640332 118640370 -3203486 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1490 618 224 23 114 chr11 118640370 118640385 -3203471 + RSINE1 SINE B4 151 165 0 1 1490 659 211 3 0 chr11 118640385 118640686 -3203170 + (CA)n Simple_repeat Simple_repeat 1 301 0 1 1490 284 290 0 14 chr11 118641124 118641271 -3202585 + (CATA)n Simple_repeat Simple_repeat 2 146 0 1 1490 465 19 0 0 chr11 118641575 118641629 -3202227 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1490 288 0 0 0 chr11 118641629 118641660 -3202196 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1490 433 266 235 11 chr11 118641669 118641848 -3202008 + ID_B1 SINE B4 6 224 0 1 1490 582 273 14 0 chr11 118641976 118642115 -3201741 + ID_B1 SINE B4 79 219 -5 1 1490 1137 72 0 0 chr11 118642129 118642267 -3201589 + B1_Mus1 SINE Alu 1 138 -10 1 1490 485 320 49 124 chr11 118642292 118642559 -3201297 + B4A SINE B4 44 290 -2 1 1490 192 294 0 0 chr11 118642580 118642665 -3201191 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1490 350 20 0 39 chr11 118642680 118642732 -3201124 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1490 586 238 230 6 chr11 118644400 118644565 -3199291 + B3 SINE B2 2 203 -13 1 1490 229 219 23 68 chr11 118646040 118646053 -3197803 + (CATG)n Simple_repeat Simple_repeat 2 14 0 1 1490 414 0 0 0 chr11 118646053 118646099 -3197757 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1490 229 219 23 68 chr11 118646099 118646173 -3197683 + (CATG)n Simple_repeat Simple_repeat 4 73 0 2 1490 435 285 6 46 chr11 118646187 118646360 -3197496 + (TATG)n Simple_repeat Simple_repeat 4 169 0 2 1490 346 297 5 74 chr11 118646385 118646574 -3197282 + (TATG)n Simple_repeat Simple_repeat 4 179 0 2 1490 237 298 64 64 chr11 118646583 118646723 -3197133 + RLTR22_Mur LTR ERVK 1309 1448 -400 2 1490 195 204 0 0 chr11 118646729 118646778 -3197078 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1490 380 250 128 8 chr11 118646836 118646969 -3196887 - B4 SINE B4 -19 273 125 2 1490 3021 116 0 16 chr11 118647191 118647619 -3196237 + MTC LTR MaLR 1 421 0 2 1490 21 57 0 0 chr11 118648657 118648692 -3195164 + AT_rich Low_complexity Low_complexity 1 35 0 2 1490 4434 178 136 14 chr11 118649022 118650005 -3193851 + RLTR25A LTR ERVK 1 1103 0 2 1490 351 313 191 10 chr11 118650265 118650559 -3193297 + L1MB5 LINE L1 5742 6088 -86 2 1490 789 148 82 0 chr11 118650636 118650771 -3193085 - B1_Mus2 SINE Alu -1 146 1 2 1490 395 234 55 116 chr11 118650771 118650826 -3193030 - MT2B LTR ERVL -434 167 123 2 1490 327 219 16 0 chr11 118651043 118651107 -3192749 + Lx8 LINE L1 7243 7307 -166 2 1490 342 296 59 38 chr11 118651634 118651820 -3192036 + Lx8 LINE L1 7283 7472 -1 2 1490 1158 274 78 3 chr11 118652050 118652372 -3191484 + MTE2a LTR MaLR 29 374 -5 2 1490 379 368 0 18 chr11 118653069 118653235 -3190621 + MER20 DNA MER1_type 51 213 -6 2 1490 192 77 0 0 chr11 118654245 118654271 -3189585 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2 1490 435 68 0 0 chr11 118656886 118656945 -3186911 + (TCCCC)n Simple_repeat Simple_repeat 4 62 0 2 1490 281 302 29 11 chr11 118657463 118657637 -3186219 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 2 1490 956 157 9 19 chr11 118657640 118657962 -3185894 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 2 1490 284 298 23 40 chr11 118658488 118658601 -3185255 + (TTAGGG)n Simple_repeat Simple_repeat 3 116 0 2 1490 251 54 0 26 chr11 118658601 118658639 -3185217 + (TTAGG)n Simple_repeat Simple_repeat 1 37 0 2 1490 284 298 23 40 chr11 118658639 118658700 -3185156 + (TTAGGG)n Simple_repeat Simple_repeat 6 62 0 2 1490 250 234 26 11 chr11 118658792 118658983 -3184873 + (TTAGGG)n Simple_repeat Simple_repeat 1 193 0 2 1490 266 257 9 0 chr11 118659302 118659407 -3184449 + CT-rich Low_complexity Low_complexity 6 111 0 2 1490 413 357 64 67 chr11 118660225 118660552 -3183304 + Charlie16a DNA MER1_type 2 327 -15 2 1490 250 281 24 12 chr11 118660885 118660968 -3182888 + B4A SINE B4 84 167 -125 2 1490 534 218 0 0 chr11 118660895 118660996 -3182860 + PB1D7 SINE Alu 10 110 -10 2 1490 528 122 0 0 chr11 118661142 118661224 -3182632 + (GGA)n Simple_repeat Simple_repeat 2 83 0 2 1490 371 255 152 41 chr11 118661515 118661696 -3182160 + RMER20B LTR ERVK 184 404 -223 2 1490 644 70 33 71 chr11 118661702 118661886 -3181970 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2 1490 266 271 28 65 chr11 118661896 118662113 -3181743 - RMER17C LTR ERVK -156 254 46 2 1490 363 250 67 9 chr11 118663106 118663211 -3180645 + PB1D7 SINE Alu 3 113 -7 2 1490 438 313 147 52 chr11 118663305 118663339 -3180517 + MLT1B LTR MaLR 5 37 -353 2 1490 718 196 43 0 chr11 118663339 118663477 -3180379 + B1_Mur1 SINE Alu 1 144 -5 2 1490 438 313 147 52 chr11 118663477 118663789 -3180067 + MLT1B LTR MaLR 38 384 -6 2 1490 282 116 0 0 chr11 118664035 118664078 -3179778 + (CCA)n Simple_repeat Simple_repeat 3 45 0 2 1490 377 327 92 124 chr11 118664080 118664460 -3179396 + MLT1A1 LTR MaLR 35 402 -6 2 1490 3053 84 10 2 chr11 118664629 118665046 -3178810 + BGLII LTR ERVK 2 421 0 2 1490 221 297 0 15 chr11 118665481 118665546 -3178310 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1490 533 102 16 41 chr11 118665559 118665682 -3178174 + (CA)n Simple_repeat Simple_repeat 1 120 0 2 1490 379 221 148 30 chr11 118666832 118666967 -3176889 + B4A SINE B4 17 167 -125 2 1490 278 354 67 84 chr11 118667032 118667375 -3176481 + MLT1B LTR MaLR 12 348 -42 2 1490 226 151 57 0 chr11 118667432 118667485 -3176371 - B4A SINE B4 -125 167 112 2 1490 517 146 54 18 chr11 118668270 118668437 -3175419 + GA-rich Low_complexity Low_complexity 1 173 0 2 1490 867 139 0 0 chr11 118669838 118670018 -3173838 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1490 229 324 0 0 chr11 118671422 118671496 -3172360 - Tigger5 DNA MER2_type -2274 132 59 2 1490 302 282 109 0 chr11 118671755 118671865 -3171991 + RSINE1 SINE B4 2 123 -42 2 1490 227 31 0 30 chr11 118672742 118672775 -3171081 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1490 291 93 0 0 chr11 118674297 118674340 -3169516 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1490 477 0 0 0 chr11 118674667 118674720 -3169136 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1490 508 232 11 0 chr11 118674768 118674945 -3168911 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1490 477 240 4 0 chr11 118674971 118675210 -3168646 + (CA)n Simple_repeat Simple_repeat 1 240 0 2 1490 643 330 68 21 chr11 118676038 118676317 -3167539 - B4A SINE B4 0 292 1 2 1490 295 192 13 13 chr11 118676736 118676815 -3167041 + GA-rich Low_complexity Low_complexity 1 79 0 2 1490 2001 240 80 6 chr11 118677336 118677852 -3166004 + RMER15 LTR ERVL 22 575 0 2 1490 477 305 28 11 chr11 118678361 118678421 -3165435 + MLT1F2 LTR MaLR 375 435 -125 2 1490 381 43 0 0 chr11 118678421 118678468 -3165388 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 2 1490 477 305 28 11 chr11 118678468 118678586 -3165270 + MLT1F2 LTR MaLR 436 555 -5 2 1490 261 119 0 0 chr11 118679128 118679170 -3164686 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 2 1490 492 160 0 0 chr11 118679261 118679361 -3164495 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 2 1490 585 225 2 11 chr11 118679468 118679942 -3163914 + (CA)n Simple_repeat Simple_repeat 1 469 0 2 1490 667 181 126 66 chr11 118683210 118683393 -3160463 + B3A SINE B2 5 198 0 2 1490 2360 136 19 6 chr11 118683403 118683765 -3160091 + ORR1B2 LTR MaLR 1 367 0 2 1490 849 250 3 3 chr11 118683808 118684220 -3159636 + (TCCA)n Simple_repeat Simple_repeat 1 412 0 2 1490 754 158 0 26 chr11 118684231 118684545 -3159311 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 2 1490 308 365 18 6 chr11 118684620 118684791 -3159065 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 2 1490 259 372 120 20 chr11 118684895 118685095 -3158761 + MIRb SINE MIR 45 264 -4 2 1490 855 313 73 129 chr11 118685443 118686109 -3157747 + L1MA6 LINE L1 5138 5811 -489 2 1490 180 0 0 0 chr11 118686109 118686129 -3157727 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1490 855 317 71 98 chr11 118686129 118686301 -3157555 + L1MA6 LINE L1 5812 5997 -192 2 1490 222 118 0 0 chr11 118687719 118687753 -3156103 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1490 307 262 137 23 chr11 118687770 118687901 -3155955 - ID_B1 SINE B4 -13 211 69 2 1490 571 257 59 27 chr11 118688133 118688353 -3155503 + L1MB3 LINE L1 5887 6113 -70 2 1490 342 295 56 76 chr11 118688803 118689001 -3154855 - MLT1A0 LTR MaLR -129 236 43 2 1490 694 337 36 4 chr11 118689126 118689403 -3154453 - MER33 DNA MER1_type -38 286 1 2 1490 974 208 106 34 chr11 118689902 118690166 -3153690 - B4 SINE B4 -9 283 1 2 1490 408 339 200 33 chr11 118690284 118690714 -3153142 - MLT1D LTR MaLR -3 502 1 2 1490 790 270 37 14 chr11 118690737 118690955 -3152901 + ID_B1 SINE B4 1 223 -1 2 1490 602 300 171 43 chr11 118691622 118691880 -3151976 + B4 SINE B4 2 292 0 2 1490 337 213 96 0 chr11 118691911 118692005 -3151851 - Tigger7 DNA MER2_type -53 2438 2336 2 1490 547 299 74 74 chr11 118692009 118692265 -3151591 + B4A SINE B4 5 260 -32 2 1490 213 175 0 0 chr11 118692299 118692339 -3151517 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1490 292 303 168 7 chr11 118692354 118692497 -3151359 - MER44B DNA MER2_type -150 400 235 2 1490 419 299 87 26 chr11 118692506 118692736 -3151120 - Tigger7 DNA MER2_type -2171 320 77 2 1490 456 116 0 0 chr11 118694921 118695007 -3148849 + (TCTCTG)n Simple_repeat Simple_repeat 4 89 0 2 1490 1125 166 166 45 chr11 118695835 118696125 -3147731 + ORR1D1 LTR MaLR 1 325 -49 2 1490 2307 92 0 0 chr11 118696106 118696422 -3147434 - ORR1A2 LTR MaLR -11 316 1 2 1490 378 188 0 0 chr11 118696422 118696490 -3147366 + ORR1D1 LTR MaLR 307 374 0 2 1490 410 261 123 13 chr11 118696644 118696799 -3147057 + RMER15 LTR ERVL 336 507 -68 2 1490 1855 201 9 6 chr11 118697346 118697686 -3146170 - MTC LTR MaLR -73 348 8 2 1490 641 170 111 0 chr11 118698676 118698785 -3145071 + B3 SINE B2 57 177 -39 2 1490 549 105 0 0 chr11 118698785 118698871 -3144985 + (CATA)n Simple_repeat Simple_repeat 4 89 0 2 1490 641 170 111 0 chr11 118698871 118698896 -3144960 + B3 SINE B2 178 205 -11 2 1490 452 48 16 0 chr11 118700047 118700110 -3143746 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1490 550 207 40 79 chr11 118700798 118700950 -3142906 + B4 SINE B4 147 292 0 2 1490 394 179 21 0 chr11 118700957 118701052 -3142804 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1490 184 188 0 0 chr11 118702029 118702061 -3141795 + MIRm SINE MIR 120 151 -125 2 1490 367 290 20 0 chr11 118702850 118702950 -3140906 + MER77 LTR ERVL 75 176 -431 2 1490 307 362 0 12 chr11 118703772 118703937 -3139919 + (CA)n Simple_repeat Simple_repeat 1 163 0 2 1490 280 259 232 0 chr11 118706234 118706346 -3137510 + MIR3 SINE MIR 33 170 -38 2 1490 1019 222 9 19 chr11 118706994 118707210 -3136646 - ID_B1 SINE B4 -9 215 2 2 1490 525 58 0 0 chr11 118709177 118709246 -3134610 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1490 631 268 109 13 chr11 118709799 118710037 -3133819 + MLT1C LTR MaLR 1 261 -206 2 1490 738 191 125 21 chr11 118710296 118710488 -3133368 + B3 SINE B2 1 212 -4 2 1490 319 147 42 0 chr11 118712450 118712545 -3131311 + (CAGAGA)n Simple_repeat Simple_repeat 4 102 0 2 1490 1025 241 54 32 chr11 118713673 118713755 -3130101 + B4 SINE B4 4 85 -207 2 1490 186 43 0 0 chr11 118713755 118713778 -3130078 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1490 1025 241 54 32 chr11 118713778 118713920 -3129936 + B4 SINE B4 86 225 -67 2 1490 441 0 0 0 chr11 118713920 118713969 -3129887 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1490 1025 241 54 32 chr11 118713969 118714022 -3129834 + B4 SINE B4 226 288 -4 2 1490 540 45 0 0 chr11 118714038 118714105 -3129751 + (CATA)n Simple_repeat Simple_repeat 4 70 0 2 1490 583 270 110 15 chr11 118715038 118715301 -3128555 - L1ME4a LINE L1 -2 6122 5835 3 1490 202 29 57 0 chr11 118715369 118715404 -3128452 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1490 263 262 37 12 chr11 118716681 118716762 -3127094 - MLT1C LTR MaLR -314 153 71 3 1490 553 302 101 28 chr11 118717861 118718079 -3125777 + B4 SINE B4 1 234 -58 3 1490 658 207 47 33 chr11 118718081 118718231 -3125625 + B3A SINE B2 1 152 -46 3 1490 261 0 0 0 chr11 118718239 118718268 -3125588 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1490 547 178 8 63 chr11 118720291 118720377 -3123479 - B3A SINE B2 -79 119 36 3 1490 4901 127 26 6 chr11 118720377 118721099 -3122757 + RMER19A LTR ERVK 1 737 0 3 1490 547 178 8 63 chr11 118721099 118721138 -3122718 - B3A SINE B2 -163 35 1 3 1490 609 52 0 0 chr11 118721545 118721622 -3122234 + (TC)n Simple_repeat Simple_repeat 2 78 0 3 1490 391 204 19 75 chr11 118721646 118721752 -3122104 - ID_B1 SINE B4 -3 221 122 3 1490 285 296 117 58 chr11 118721862 118722016 -3121840 + RSINE1 SINE B4 3 165 0 3 1490 273 257 110 0 chr11 118722048 118722157 -3121699 - MER33 DNA MER1_type -39 285 165 3 1490 581 27 13 0 chr11 118723840 118723915 -3119941 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1490 234 320 0 0 chr11 118724116 118724219 -3119637 + (TCTCTG)n Simple_repeat Simple_repeat 3 105 0 3 1490 516 32 0 0 chr11 118724626 118724688 -3119168 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1490 314 226 12 12 chr11 118725689 118725774 -3118082 + HAL1-3A_ME LINE L1 1934 2018 -840 3 1490 768 219 21 8 chr11 118725774 118726260 -3117596 + (CA)n Simple_repeat Simple_repeat 1 492 0 3 1490 256 301 27 0 chr11 118726935 118727008 -3116848 + B4A SINE B4 1 75 -217 3 1490 195 245 0 54 chr11 118727031 118727087 -3116769 - MER5A DNA MER1_type -125 64 12 3 1490 21 0 0 0 chr11 118727262 118727283 -3116573 + GC_rich Low_complexity Low_complexity 1 21 0 3 1490 238 337 11 11 chr11 118727500 118727587 -3116269 + L2b LINE L2 3287 3373 -2 3 1490 195 129 0 0 chr11 118727788 118727819 -3116037 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 3 1490 319 241 35 14 chr11 118727832 118727975 -3115881 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 3 1490 280 267 19 9 chr11 118727991 118728097 -3115759 + (CATA)n Simple_repeat Simple_repeat 1 107 0 3 1490 191 224 13 0 chr11 118728125 118728201 -3115655 + (CATA)n Simple_repeat Simple_repeat 3 79 0 3 1490 320 190 22 49 chr11 118728228 118728411 -3115445 + (CATA)n Simple_repeat Simple_repeat 3 180 0 3 1490 564 194 9 0 chr11 118728642 118728750 -3115106 + B3 SINE B2 4 112 -104 3 1490 229 382 7 49 chr11 118728750 118728785 -3115071 + RSINE1 SINE B4 5 141 -24 3 1490 315 277 58 19 chr11 118728810 118728913 -3114943 - L1M5 LINE L1 -2360 3786 3680 3 1490 24 0 0 0 chr11 118728919 118728943 -3114913 + AT_rich Low_complexity Low_complexity 1 24 0 3 1490 402 279 293 0 chr11 118729190 118729412 -3114444 + MTEa LTR MaLR 59 345 -34 3 1490 334 295 16 8 chr11 118729878 118730001 -3113855 - HAL1-2a_MD LINE L1 -543 2481 2358 3 1490 726 241 46 5 chr11 118729999 118730195 -3113661 - HAL1-2a_MD LINE L1 -499 2525 2322 3 1490 333 307 62 35 chr11 118730197 118730342 -3113514 - HAL1-2a_MD LINE L1 -529 2495 2347 3 1490 338 265 34 74 chr11 118730334 118730509 -3113347 - HAL1-2a_MD LINE L1 -533 2491 2324 3 1490 321 282 46 58 chr11 118730549 118730722 -3113134 - HAL1-2a_MD LINE L1 -509 2515 2345 3 1490 624 62 0 0 chr11 118731531 118731612 -3112244 + (GA)n Simple_repeat Simple_repeat 2 82 0 3 1490 702 0 0 0 chr11 118731856 118731934 -3111922 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1490 400 321 30 0 chr11 118733630 118733848 -3110008 + (TGGA)n Simple_repeat Simple_repeat 1 224 0 3 1490 228 370 48 0 chr11 118733780 118733926 -3109930 + (TGGG)n Simple_repeat Simple_repeat 3 155 0 3 1490 363 151 11 21 chr11 118733943 118734038 -3109818 + (TGGA)n Simple_repeat Simple_repeat 4 97 0 3 1490 732 160 19 15 chr11 118734042 118734311 -3109545 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 3 1490 245 294 92 38 chr11 118734590 118734721 -3109135 - MIRb SINE MIR -34 234 97 3 1490 1774 106 56 14 chr11 118739251 118739539 -3104317 + ORR1A4 LTR MaLR 1 300 -29 3 1490 250 275 116 8 chr11 118739563 118739684 -3104172 - L3 LINE CR1 -854 3635 3502 3 1490 642 245 269 28 chr11 118741058 118741344 -3102512 - ORR1E LTR MaLR -3 356 2 3 1490 351 184 0 0 chr11 118741411 118741498 -3102358 + CT-rich Low_complexity Low_complexity 2 88 0 3 1490 498 33 0 0 chr11 118742872 118742932 -3100924 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1490 1032 229 92 134 chr11 118743472 118743830 -3100026 + MTEa LTR MaLR 18 360 -19 3 1490 451 316 308 16 chr11 118745911 118746287 -3097569 + MLT1H LTR MaLR 66 549 0 3 1490 327 282 59 0 chr11 118747816 118747901 -3095955 + MER44D DNA MER2_type 4 93 -612 3 1490 621 241 79 15 chr11 118748036 118748238 -3095618 + B4 SINE B4 78 292 0 3 1490 499 308 0 0 chr11 118748271 118748935 -3094921 + (CA)n Simple_repeat Simple_repeat 1 664 0 3 1490 363 375 0 0 chr11 118749142 118749392 -3094464 + C-rich Low_complexity Low_complexity 1 250 0 3 1490 201 39 0 0 chr11 118749643 118749669 -3094187 + (CACCC)n Simple_repeat Simple_repeat 2 27 0 3 1490 261 203 87 0 chr11 118750104 118750173 -3093683 - MLT1C LTR MaLR -383 84 10 3 1490 277 307 0 38 chr11 118750380 118750485 -3093371 + G-rich Low_complexity Low_complexity 5 105 0 3 1491 755 319 28 35 chr11 118753411 118753700 -3090156 + B4A SINE B4 6 292 0 3 1491 21 0 0 0 chr11 118754422 118754443 -3089413 + AT_rich Low_complexity Low_complexity 1 21 0 3 1491 198 0 0 0 chr11 118756058 118756080 -3087776 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1491 360 0 0 0 chr11 118758066 118758106 -3085750 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1491 632 284 78 0 chr11 118758146 118758350 -3085506 + ID_B1 SINE B4 2 221 -3 3 1491 188 111 28 0 chr11 118758370 118758406 -3085450 + (CATA)n Simple_repeat Simple_repeat 4 40 0 3 1491 878 289 28 17 chr11 118760870 118761159 -3082697 - B4 SINE B4 0 292 1 3 1491 760 278 50 35 chr11 118762559 118762842 -3081014 - B4A SINE B4 -4 288 2 3 1491 326 80 0 20 chr11 118763207 118763258 -3080598 + (TTA)n Simple_repeat Simple_repeat 3 52 0 3 1491 680 167 71 21 chr11 118763416 118763530 -3080326 + B1_Mur4 SINE Alu 3 118 -32 3 1491 225 0 0 0 chr11 118763530 118763555 -3080301 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1491 680 167 71 21 chr11 118763555 118763581 -3080275 + B1_Mur4 SINE Alu 119 150 0 3 1491 740 254 19 58 chr11 118763686 118763891 -3079965 - B3A SINE B2 0 198 2 3 1491 1187 184 34 0 chr11 118763946 118764152 -3079704 - B3 SINE B2 -3 213 1 3 1491 1011 248 218 3 chr11 118764700 118765003 -3078853 + ORR1D2 LTR MaLR 1 368 -2 3 1491 1211 62 0 0 chr11 118765843 118765989 -3077867 + B1_Mus1 SINE Alu 2 147 -1 3 1491 297 0 0 0 chr11 118765991 118766024 -3077832 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1491 936 237 85 4 chr11 118766048 118766294 -3077562 + MTD LTR MaLR 18 283 -136 3 1491 438 20 0 0 chr11 118766476 118766527 -3077329 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1491 270 0 0 0 chr11 118770227 118770257 -3073599 + (CCG)n Simple_repeat Simple_repeat 2 31 0 3 1491 594 0 0 0 chr11 118770857 118770923 -3072933 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 1491 216 245 0 19 chr11 118770968 118771022 -3072834 + (CGG)n Simple_repeat Simple_repeat 2 54 0 3 1491 199 0 31 31 chr11 118771971 118772003 -3071853 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1491 378 0 0 0 chr11 118773046 118773088 -3070768 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1491 565 257 57 32 chr11 118773102 118773259 -3070597 - B3A SINE B2 -37 161 1 3 1491 780 114 8 20 chr11 118773483 118773636 -3070220 - URR1B DNA MER1_type -36 189 53 3 1491 697 201 0 15 chr11 118773655 118773791 -3070065 + MTEb LTR MaLR 107 240 -139 3 1491 729 235 54 27 chr11 118773785 118773969 -3069887 + MTEa LTR MaLR 190 378 -1 3 1491 974 271 130 38 chr11 118774205 118774711 -3069145 + HAL1 LINE L1 631 1183 -1324 3 1491 440 243 47 13 chr11 118775219 118775369 -3068487 + MT2A LTR ERVL 379 533 0 3 1491 615 251 164 20 chr11 118775483 118775695 -3068161 + B4A SINE B4 14 245 -47 3 1491 243 0 0 0 chr11 118775695 118775722 -3068134 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1491 615 251 164 20 chr11 118775722 118775753 -3068103 + B4A SINE B4 246 292 0 3 1491 262 269 7 7 chr11 118775817 118775963 -3067893 + (CA)n Simple_repeat Simple_repeat 2 147 0 3 1491 324 211 26 82 chr11 118776412 118776553 -3067303 + PB1 SINE Alu 7 133 -16 3 1491 504 118 9 38 chr11 118777006 118777112 -3066744 + C-rich Low_complexity Low_complexity 1 103 0 3 1491 894 134 6 12 chr11 118777128 118777294 -3066562 + C-rich Low_complexity Low_complexity 2 166 0 3 1491 402 279 70 0 chr11 118778828 118778957 -3064899 + B1F1 SINE Alu 1 138 -11 3 1491 414 0 0 0 chr11 118779094 118779140 -3064716 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1491 266 169 0 15 chr11 118779141 118779207 -3064649 + GA-rich Low_complexity Low_complexity 4 68 0 3 1491 374 0 0 21 chr11 118779494 118779541 -3064315 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1491 597 223 23 18 chr11 118779555 118779701 -3064155 - B1_Mur1 SINE Alu -1 148 5 3 1491 758 235 65 117 chr11 118779809 118780040 -3063816 - MTE2b LTR MaLR -139 240 22 3 1491 302 343 42 124 chr11 118780762 118781118 -3062738 - L1ME1 LINE L1 -179 6000 5674 3 1491 283 196 0 0 chr11 118781178 118781234 -3062622 - B4A SINE B4 -49 243 188 3 1491 479 274 9 9 chr11 118781736 118781850 -3062006 + RSINE1 SINE B4 35 148 -17 3 1491 255 307 201 52 chr11 118781947 118782215 -3061641 + MLT1J LTR MaLR 126 433 -79 3 1491 478 252 289 40 chr11 118782217 118782374 -3061482 + B4A SINE B4 5 204 -88 3 1491 2578 105 56 0 chr11 118782374 118782747 -3061109 - ORR1B1 LTR MaLR 0 394 1 4 1491 478 282 40 53 chr11 118782747 118782837 -3061019 + B4A SINE B4 205 290 -2 3 1491 288 308 0 11 chr11 118782840 118782932 -3060924 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1491 1214 95 6 0 chr11 118784089 118784268 -3059588 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1491 612 170 0 0 chr11 118784825 118784984 -3058872 + (TG)n Simple_repeat Simple_repeat 2 160 0 4 1491 363 214 0 0 chr11 118785032 118785163 -3058693 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 1491 215 246 35 0 chr11 118785224 118785281 -3058575 - B4A SINE B4 -233 59 1 3 1491 765 121 24 16 chr11 118785306 118785432 -3058424 - B1_Mur4 SINE Alu -2 148 22 4 1491 351 65 0 0 chr11 118785566 118785612 -3058244 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1491 380 305 128 68 chr11 118785674 118785955 -3057901 + ORR1E LTR MaLR 7 304 -55 4 1491 500 162 91 0 chr11 118785977 118786076 -3057780 + ID_B1 SINE B4 116 223 -1 4 1491 427 277 0 0 chr11 118786077 118786171 -3057685 + B3 SINE B2 5 98 -118 4 1491 462 75 0 0 chr11 118787347 118787414 -3056442 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1491 2470 158 39 5 chr11 118787950 118788357 -3055499 + MTC LTR MaLR 1 421 0 4 1491 521 271 125 0 chr11 118789940 118790084 -3053772 + RSINE1 SINE B4 2 163 -2 4 1491 25 0 0 0 chr11 118790085 118790110 -3053746 + AT_rich Low_complexity Low_complexity 1 25 0 4 1491 788 165 68 0 chr11 118790770 118790903 -3052953 + B1_Mus2 SINE Alu 1 142 -5 4 1491 419 202 11 43 chr11 118791257 118791350 -3052506 + B4A SINE B4 47 136 -156 4 1491 997 129 250 6 chr11 118791416 118791588 -3052268 + B3 SINE B2 2 215 -1 4 1491 52 17 0 0 chr11 118791589 118791648 -3052208 + AT_rich Low_complexity Low_complexity 1 59 0 4 1491 215 61 30 0 chr11 118791684 118791717 -3052139 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1491 764 295 126 24 chr11 118791738 118792248 -3051608 + L1M3 LINE L1 2201 2762 -3378 4 1491 406 275 113 21 chr11 118792468 118792609 -3051247 + RSINE1 SINE B4 12 165 0 4 1491 416 143 65 12 chr11 118792629 118792799 -3051057 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1491 372 243 50 7 chr11 118792905 118793046 -3050810 + L1M3 LINE L1 3035 3181 -2959 4 1491 1890 160 62 6 chr11 118793075 118793427 -3050429 + ORR1C2 LTR MaLR 1 372 -12 4 1491 1022 204 24 9 chr11 118793447 118793660 -3050196 - B3 SINE B2 0 216 1 4 1491 562 282 165 6 chr11 118793670 118793998 -3049858 + L1M3 LINE L1 3204 3583 -2557 4 1491 493 269 62 0 chr11 118794172 118794317 -3049539 + Lx8 LINE L1 6930 7083 -390 4 1491 507 154 18 71 chr11 118794317 118794429 -3049427 - B1F2 SINE Alu -4 145 40 4 1491 371 266 97 7 chr11 118794560 118794715 -3049141 + L1M5 LINE L1 2713 2881 -3265 4 1491 1539 221 132 34 chr11 118794831 118795299 -3048557 + RCHARR1 DNA MER1_type 3 516 -458 4 1491 762 113 0 0 chr11 118795310 118795425 -3048431 + (GGA)n Simple_repeat Simple_repeat 3 117 0 4 1491 1644 198 41 78 chr11 118795431 118795727 -3048129 + RCHARR1 DNA MER1_type 532 836 -138 4 1491 747 249 90 0 chr11 118795727 118795904 -3047952 - B3A SINE B2 -4 194 2 4 1491 1644 198 41 78 chr11 118795904 118796067 -3047789 + RCHARR1 DNA MER1_type 837 974 0 4 1491 262 357 41 0 chr11 118796140 118796238 -3047618 - MER21B LTR ERV1 -261 602 501 4 1491 356 271 277 16 chr11 118796274 118796581 -3047275 - MER77 LTR ERVL -18 589 203 4 1491 211 269 19 0 chr11 118796850 118796902 -3046954 + ID4 SINE ID 7 59 -24 4 1491 345 164 0 47 chr11 118796969 118797097 -3046759 + (CAGAGA)n Simple_repeat Simple_repeat 2 123 0 4 1491 754 121 22 33 chr11 118797087 118797267 -3046589 + (CAGA)n Simple_repeat Simple_repeat 2 179 0 4 1491 471 265 20 7 chr11 118797268 118797420 -3046436 + GA-rich Low_complexity Low_complexity 1 154 0 4 1491 181 100 75 0 chr11 118797424 118797464 -3046392 + G-rich Low_complexity Low_complexity 5 47 0 4 1491 625 294 12 6 chr11 118798711 118798872 -3044984 + RSINE1 SINE B4 1 162 -3 4 1491 235 323 0 0 chr11 118798876 118798938 -3044918 + (CACG)n Simple_repeat Simple_repeat 2 63 0 4 1491 414 219 17 3 chr11 118799139 118799248 -3044608 + B3A SINE B2 3 116 -100 4 1491 35 41 0 0 chr11 118799303 118799352 -3044504 + AT_rich Low_complexity Low_complexity 1 49 0 4 1491 271 269 0 13 chr11 118799545 118799624 -3044232 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1491 346 0 0 0 chr11 118799954 118799996 -3043860 - MT2B LTR ERVL 0 584 543 4 1491 326 87 0 0 chr11 118799996 118800042 -3043814 - RLTR26 LTR ERVK 0 642 597 4 1491 3614 104 10 41 chr11 118800080 118800662 -3043194 - MT2B LTR ERVL -37 564 1 4 1491 337 339 124 19 chr11 118801410 118801675 -3042181 + LTR16C LTR ERVL 180 472 -17 4 1491 999 248 181 35 chr11 118801868 118802265 -3041591 + MLT1F LTR MaLR 87 541 -7 4 1491 513 280 46 76 chr11 118802342 118802644 -3041212 + HAL1 LINE L1 1041 1333 -1174 4 1491 198 0 0 0 chr11 118803168 118803190 -3040666 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1491 899 151 11 11 chr11 118803382 118803574 -3040282 + B3 SINE B2 3 198 0 4 1491 233 158 0 0 chr11 118803577 118803615 -3040241 - MLT2C1 LTR ERVL 0 563 526 4 1491 596 296 122 77 chr11 118803609 118803803 -3040053 - MT2A LTR ERVL -112 421 227 4 1491 198 0 0 0 chr11 118803803 118803825 -3040031 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 4 1491 596 296 122 77 chr11 118803825 118804033 -3039823 - MT2A LTR ERVL -307 226 1 4 1491 308 286 8 43 chr11 118804649 118804766 -3039090 + L1MB7 LINE L1 5792 5904 -280 4 1491 424 193 97 25 chr11 118804868 118804987 -3038869 - MLT1A0 LTR MaLR -16 374 256 4 1491 610 254 119 35 chr11 118805159 118805420 -3038436 + B4A SINE B4 2 284 -8 4 1491 411 255 18 45 chr11 118805508 118805619 -3038237 - PB1D10 SINE Alu -5 112 5 4 1491 650 206 239 18 chr11 118806205 118806427 -3037429 + MTD LTR MaLR 135 405 -14 4 1491 279 79 0 0 chr11 118806651 118806689 -3037167 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 4 1491 441 229 0 0 chr11 118808012 118808117 -3035739 + (TG)n Simple_repeat Simple_repeat 2 106 0 4 1491 443 193 0 0 chr11 118808125 118808208 -3035648 - B4 SINE B4 -2 290 208 4 1491 539 203 8 61 chr11 118808222 118808353 -3035503 - MTD LTR MaLR -295 124 1 4 1491 432 260 0 0 chr11 118809904 118810077 -3033779 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 1491 199 203 14 14 chr11 118810106 118810176 -3033680 + (TATG)n Simple_repeat Simple_repeat 3 72 0 4 1491 430 295 12 12 chr11 118810243 118810411 -3033445 + (TG)n Simple_repeat Simple_repeat 2 169 0 4 1491 787 251 89 0 chr11 118810491 118810694 -3033162 + MTD LTR MaLR 1 221 -198 4 1491 854 263 33 0 chr11 118810933 118811146 -3032710 + ID_B1 SINE B4 5 224 0 4 1491 311 185 16 65 chr11 118813693 118813878 -3029978 + (CATA)n Simple_repeat Simple_repeat 4 179 0 4 1491 251 154 19 19 chr11 118813879 118813932 -3029924 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1491 677 202 4 0 chr11 118814839 118815084 -3028772 + (CA)n Simple_repeat Simple_repeat 1 246 0 4 1491 907 145 206 6 chr11 118815111 118815291 -3028565 - B3 SINE B2 0 216 1 4 1491 472 307 6 58 chr11 118815339 118815512 -3028344 - RSINE1 SINE B4 0 165 2 4 1491 265 228 27 90 chr11 118817032 118817143 -3026713 + ORR1E LTR MaLR 62 165 -194 4 1491 486 165 47 6 chr11 118817598 118817769 -3026087 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1491 574 151 28 25 chr11 118817785 118818139 -3025717 + (CA)n Simple_repeat Simple_repeat 1 355 0 4 1491 706 230 13 44 chr11 118819840 118819999 -3023857 + RSINE1 SINE B4 1 154 -11 4 1491 396 0 0 0 chr11 118821340 118821384 -3022472 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1491 816 233 0 18 chr11 118821777 118821943 -3021913 - RSINE1 SINE B4 0 165 3 4 1491 276 100 0 0 chr11 118822456 118822496 -3021360 + (TATG)n Simple_repeat Simple_repeat 3 42 0 4 1491 261 312 38 25 chr11 118822638 118822796 -3021060 + (CATG)n Simple_repeat Simple_repeat 2 161 0 4 1491 805 148 70 0 chr11 118824523 118824651 -3019205 - B1F SINE Alu -10 139 3 4 1491 247 289 56 0 chr11 118824654 118824744 -3019112 - MLT1E1A LTR MaLR -250 430 336 4 1491 605 199 90 15 chr11 118824841 118824974 -3018882 + B1F SINE Alu 1 143 -6 4 1491 226 278 0 18 chr11 118824992 118825047 -3018809 + G-rich Low_complexity Low_complexity 1 54 0 4 1491 262 289 53 30 chr11 118825200 118825332 -3018524 - MLT2B3 LTR ERVL -53 514 380 4 1491 302 313 93 57 chr11 118825350 118825543 -3018313 - MLT2B3 LTR ERVL -315 239 40 4 1491 437 284 91 30 chr11 118825970 118826167 -3017689 + MLT1C LTR MaLR 37 235 -270 4 1491 1234 224 137 3 chr11 118826329 118826651 -3017205 - MTEb LTR MaLR -14 365 1 4 1491 605 213 6 17 chr11 118827028 118827200 -3016656 + C-rich Low_complexity Low_complexity 6 175 0 4 1491 695 154 8 0 chr11 118827507 118827637 -3016219 + URR1B DNA MER1_type 81 211 -14 4 1491 282 287 72 60 chr11 118829502 118829669 -3014187 + MLT1A1 LTR MaLR 17 185 -223 4 1491 599 206 0 0 chr11 118829637 118829744 -3014112 + B3A SINE B2 14 120 -78 4 1491 396 0 0 0 chr11 118829751 118829795 -3014061 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1491 229 376 82 13 chr11 118829825 118829984 -3013872 + MLT1A1 LTR MaLR 239 408 0 4 1491 347 147 67 0 chr11 118830844 118830919 -3012937 - HAL1-3A_ME LINE L1 -800 2058 1979 4 1491 400 352 6 6 chr11 118830921 118831084 -3012772 + (TG)n Simple_repeat Simple_repeat 2 164 0 4 1491 1956 157 199 0 chr11 118831137 118831488 -3012368 + MTC LTR MaLR 1 421 0 4 1491 605 129 47 0 chr11 118831795 118831966 -3011890 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 4 1491 476 136 0 0 chr11 118831966 118832047 -3011809 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1491 357 24 0 0 chr11 118832047 118832089 -3011767 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1491 608 214 63 8 chr11 118833610 118833737 -3010119 - ID_B1 SINE B4 -5 219 86 4 1491 592 302 57 9 chr11 118835660 118835887 -3007969 + RMER15 LTR ERVL 336 573 -2 4 1491 770 217 165 21 chr11 118836140 118836328 -3007528 + B3 SINE B2 2 216 0 4 1491 663 193 82 0 chr11 118836349 118836484 -3007372 - B1_Mus2 SINE Alu 0 147 2 4 1491 351 0 0 0 chr11 118836513 118836552 -3007304 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1491 1246 64 6 6 chr11 118836552 118836726 -3007130 + (GAGAA)n Simple_repeat Simple_repeat 5 178 0 5 1491 471 261 114 27 chr11 118837361 118837643 -3006213 + MTD LTR MaLR 8 415 -4 5 1491 605 49 0 0 chr11 118837642 118837723 -3006133 + B1_Mus2 SINE Alu 67 147 0 5 1491 335 148 16 0 chr11 118837847 118837908 -3005948 + RSINE1 SINE B4 32 93 -72 5 1491 351 0 0 0 chr11 118837923 118837962 -3005894 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1491 1405 87 22 0 chr11 118837999 118838182 -3005674 - B2_Mm2 SINE B2 -8 187 1 5 1491 288 0 0 0 chr11 118838199 118838231 -3005625 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5 1491 1174 95 0 6 chr11 118838231 118838390 -3005466 - B2_Mm2 SINE B2 -36 159 1 5 1491 280 338 211 45 chr11 118838439 118838681 -3005175 + B4 SINE B4 2 283 -9 5 1491 297 0 0 0 chr11 118838739 118838772 -3005084 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1491 291 264 0 0 chr11 118838772 118838863 -3004993 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1491 461 129 11 34 chr11 118839039 118839127 -3004729 + PB1 SINE Alu 42 127 0 5 1491 1107 57 43 0 chr11 118839130 118839270 -3004586 + B1_Mus2 SINE Alu 2 147 0 5 1491 216 164 45 0 chr11 118840991 118841058 -3002798 + GA-rich Low_complexity Low_complexity 2 71 0 5 1491 1356 74 0 2 chr11 118841352 118841746 -3002110 + (CA)n Simple_repeat Simple_repeat 1 393 0 5 1491 411 261 27 9 chr11 118841774 118841886 -3001970 - L1M3 LINE L1 -682 5507 5394 5 1491 513 175 96 9 chr11 118841906 118842021 -3001835 - B1_Mur4 SINE Alu -20 130 6 5 1491 272 282 35 35 chr11 118841924 118842038 -3001818 - MT2B LTR ERVL -336 265 152 5 1491 608 332 0 44 chr11 118842916 118843121 -3000735 - B3A SINE B2 0 198 3 5 1491 473 179 10 31 chr11 118843158 118843256 -3000600 - B1F SINE Alu 0 149 54 5 1491 556 273 21 7 chr11 118843577 118843721 -3000135 + ID_B1 SINE B4 74 219 -5 5 1491 378 61 0 0 chr11 118845565 118845614 -2998242 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1491 205 356 11 0 chr11 118845659 118845749 -2998107 + (TATG)n Simple_repeat Simple_repeat 1 91 0 5 1491 1344 247 161 38 chr11 118845752 118846198 -2997658 + RMER5 LTR ERV1 13 513 -21 5 1491 351 209 26 103 chr11 118846228 118846345 -2997511 - L1MCa LINE L1 -4516 1992 1885 5 1491 466 227 8 8 chr11 118846444 118846577 -2997279 + (TA)n Simple_repeat Simple_repeat 2 134 0 5 1491 697 194 291 0 chr11 118847371 118847536 -2996320 + ID_B1 SINE B4 3 215 -9 5 1491 23 0 0 0 chr11 118847553 118847576 -2996280 + AT_rich Low_complexity Low_complexity 1 23 0 5 1491 803 185 7 0 chr11 118847576 118847722 -2996134 + B3 SINE B2 2 148 -68 5 1491 497 158 79 0 chr11 118847845 118848010 -2995846 + (CAGA)n Simple_repeat Simple_repeat 3 180 0 5 1491 211 156 0 43 chr11 118848330 118848377 -2995479 + CT-rich Low_complexity Low_complexity 2 46 0 5 1491 613 170 184 0 chr11 118849187 118849328 -2994528 + ORR1B2 LTR MaLR 2 168 -199 5 1491 888 211 20 3 chr11 118850410 118850604 -2993252 + ID_B1 SINE B4 8 199 -25 5 1491 335 80 0 0 chr11 118850613 118850663 -2993193 + B1F SINE Alu 73 122 -27 5 1491 399 148 0 13 chr11 118850636 118850726 -2993130 + B1F SINE Alu 42 127 -22 5 1491 291 204 0 0 chr11 118850695 118850749 -2993107 + ID_B1 SINE B4 146 199 -25 5 1491 275 246 43 0 chr11 118850729 118850798 -2993058 + B1F SINE Alu 73 144 -5 5 1491 540 168 24 0 chr11 118850824 118850949 -2992907 + GA-rich Low_complexity Low_complexity 1 128 0 5 1491 561 163 11 22 chr11 118852476 118852658 -2991198 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1491 225 0 0 0 chr11 118852669 118852694 -2991162 + (GTGTG)n Simple_repeat Simple_repeat 1 25 0 5 1491 620 213 16 19 chr11 118852694 118853015 -2990841 + (TG)n Simple_repeat Simple_repeat 1 320 0 5 1491 321 26 0 0 chr11 118853392 118853430 -2990426 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 5 1491 253 312 43 0 chr11 118854588 118854681 -2989175 + BC1_Mm scRNA scRNA 8 104 -48 5 1491 675 132 0 0 chr11 118854681 118854795 -2989061 + (GGGA)n Simple_repeat Simple_repeat 2 115 0 5 1491 484 277 43 43 chr11 118856413 118856575 -2987281 + RMER30 DNA MER1_type 41 202 0 5 1491 522 252 76 7 chr11 118856423 118856567 -2987289 - Charlie12 DNA MER1_type -2712 161 8 5 1491 495 0 0 0 chr11 118858032 118858087 -2985769 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1491 232 232 86 56 chr11 118858297 118858389 -2985467 + MIR SINE MIR 62 160 -116 5 1491 437 255 0 11 chr11 118858396 118858491 -2985365 + PB1D10 SINE Alu 11 104 -13 5 1491 183 80 0 0 chr11 118858491 118858516 -2985340 + (CAAG)n Simple_repeat Simple_repeat 1 25 0 5 1491 207 0 0 0 chr11 118858918 118858941 -2984915 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1491 524 276 22 7 chr11 118859007 118859142 -2984714 + RSINE1 SINE B4 7 143 -22 5 1491 333 0 0 0 chr11 118859148 118859185 -2984671 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1491 273 293 39 26 chr11 118859196 118859219 -2984637 + B4A SINE B4 213 238 -54 5 1491 760 211 0 26 chr11 118859219 118859370 -2984486 + B1_Mur2 SINE Alu 2 148 -1 5 1491 273 293 39 26 chr11 118859370 118859423 -2984433 + B4A SINE B4 239 290 -2 5 1491 527 172 11 0 chr11 118859456 118859549 -2984307 - PB1D9 SINE Alu -8 112 19 5 1491 198 0 0 0 chr11 118861184 118861206 -2982650 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1491 248 323 85 62 chr11 118861776 118862083 -2981773 + Charlie2b DNA MER1_type 2146 2459 -323 5 1491 269 318 25 83 chr11 118862065 118862185 -2981671 + ID_B1 SINE B4 79 191 -33 5 1491 599 220 50 48 chr11 118862287 118862465 -2981391 + B3 SINE B2 5 191 -25 5 1491 780 128 8 0 chr11 118862477 118862602 -2981254 + B1_Mus2 SINE Alu 21 146 -1 5 1491 387 0 0 0 chr11 118863094 118863137 -2980719 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1491 315 0 0 0 chr11 118863137 118863171 -2980685 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1491 390 269 67 0 chr11 118863280 118863384 -2980472 - MLT1A1 LTR MaLR -22 386 276 5 1491 317 24 24 0 chr11 118863416 118863458 -2980398 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1491 546 161 6 47 chr11 118863534 118863703 -2980153 + CT-rich Low_complexity Low_complexity 3 164 0 5 1491 250 248 15 161 chr11 118863725 118863746 -2980110 - B1F SINE Alu -7 142 124 5 1491 1013 104 0 0 chr11 118863746 118863880 -2979976 + B1_Mus1 SINE Alu 5 138 -10 5 1491 363 23 0 0 chr11 118863880 118863924 -2979932 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 1491 250 248 15 161 chr11 118863924 118864031 -2979825 - B1F SINE Alu -26 123 33 5 1491 812 65 0 0 chr11 118864157 118864264 -2979592 - B2_Mm2 SINE B2 -88 107 1 5 1491 22 35 0 0 chr11 118864271 118864300 -2979556 + AT_rich Low_complexity Low_complexity 1 29 0 5 1491 939 218 98 17 chr11 118864329 118864640 -2979216 - ORR1D1 LTR MaLR -2 357 1 5 1491 579 261 37 31 chr11 118864650 118864812 -2979044 - B3A SINE B2 -34 164 2 5 1491 2132 74 32 10 chr11 118865205 118865517 -2978339 + ORR1A2 LTR MaLR 1 319 -8 5 1491 749 223 180 28 chr11 118865598 118865815 -2978041 + MTEb LTR MaLR 3 252 -127 5 1491 695 114 13 52 chr11 118865815 118866046 -2977810 + CT-rich Low_complexity Low_complexity 1 222 0 5 1491 3468 175 103 91 chr11 118866096 118866989 -2976867 + RMER13B LTR ERVK 5 908 0 5 1491 500 172 267 7 chr11 118866996 118867142 -2976714 + MTEa LTR MaLR 190 373 -6 5 1491 219 36 0 0 chr11 118867188 118867216 -2976640 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1491 372 346 7 7 chr11 118867395 118867532 -2976324 + B1F SINE Alu 1 137 -12 5 1491 210 118 0 0 chr11 118867546 118867580 -2976276 + (GGA)n Simple_repeat Simple_repeat 3 36 0 5 1491 320 191 40 50 chr11 118867601 118867685 -2976171 + Lx9 LINE L1 7393 7477 -167 5 1491 405 0 0 0 chr11 118867685 118867730 -2976126 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1491 466 117 555 24 chr11 118867730 118867839 -2976017 + Lx9 LINE L1 7478 7643 -1 5 1491 876 216 92 5 chr11 118867861 118868056 -2975800 + B3 SINE B2 1 212 -4 5 1491 926 323 35 0 chr11 118868265 118868547 -2975309 - B4A SINE B4 0 292 1 5 1491 255 238 252 19 chr11 118868589 118868600 -2975256 - B4A SINE B4 -61 231 100 5 1491 548 177 0 0 chr11 118868600 118868696 -2975160 - PB1D10 SINE Alu -7 110 15 5 1491 992 188 5 39 chr11 118869842 118870047 -2973809 + B3A SINE B2 1 198 0 5 1491 249 216 20 0 chr11 118870094 118870145 -2973711 + B4A SINE B4 30 81 -211 5 1491 1000 223 243 18 chr11 118870145 118870249 -2973607 - MTD LTR MaLR 0 419 314 5 1491 2843 120 31 19 chr11 118870249 118870665 -2973191 + MTC LTR MaLR 1 421 0 5 1491 1000 223 243 18 chr11 118870665 118870902 -2972954 - MTD LTR MaLR -106 313 1 5 1491 357 24 0 0 chr11 118870915 118870957 -2972899 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1491 878 70 199 0 chr11 118871359 118871515 -2972341 - B2_Mm1t SINE B2 0 193 7 5 1491 384 302 17 0 chr11 118871920 118872039 -2971817 - RSINE1 SINE B4 -11 154 34 5 1491 958 111 0 37 chr11 118872092 118872279 -2971577 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1491 898 136 8 0 chr11 118872281 118872413 -2971443 - B1_Mus1 SINE Alu -14 134 2 5 1491 542 254 14 7 chr11 118872451 118872590 -2971266 + RSINE1 SINE B4 4 143 -22 5 1491 463 292 5 114 chr11 118872659 118872852 -2971004 + ID_B1 SINE B4 14 185 -39 5 1491 3199 66 18 0 chr11 118872919 118873312 -2970544 - MTB LTR MaLR 0 400 1 5 1491 1077 82 50 0 chr11 118873381 118873540 -2970316 + B2_Mm2 SINE B2 3 169 -26 5 1491 668 91 0 5 chr11 118874082 118874189 -2969667 - L1_Mus2 LINE L1 0 6582 6473 6 1491 827 29 19 0 chr11 118874193 118874298 -2969558 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 6 1491 1820 275 50 11 chr11 118874402 118874923 -2968933 + Lx6 LINE L1 6919 7452 -8 6 1491 667 234 176 18 chr11 118874970 118875140 -2968716 - B3A SINE B2 -1 197 1 6 1491 475 361 0 0 chr11 118875229 118875460 -2968396 + (CA)n Simple_repeat Simple_repeat 1 231 0 6 1491 354 45 0 0 chr11 118875484 118875528 -2968328 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1491 1299 67 0 119 chr11 118876325 118876544 -2967312 + B2_Mm2 SINE B2 2 194 -1 6 1491 207 0 0 0 chr11 118876646 118876669 -2967187 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1491 607 211 122 35 chr11 118877313 118877485 -2966371 + B3 SINE B2 6 192 -24 6 1491 254 295 39 0 chr11 118877603 118877681 -2966175 + MER2B DNA MER2_type 245 325 -11 6 1491 360 0 0 0 chr11 118877855 118877895 -2965961 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1491 336 200 0 0 chr11 118878370 118878435 -2965421 - B3A SINE B2 -133 65 1 6 1491 610 238 7 40 chr11 118878520 118878669 -2965187 - RSINE1 SINE B4 -21 144 1 6 1491 228 35 0 0 chr11 118879254 118879283 -2964573 + (TTA)n Simple_repeat Simple_repeat 1 29 0 6 1491 334 269 174 15 chr11 118879344 118879476 -2964380 - RSINE1 SINE B4 -10 155 3 6 1491 588 248 29 0 chr11 118879715 118879852 -2964004 + B1_Mur2 SINE Alu 2 142 -7 6 1491 249 33 0 0 chr11 118879852 118879882 -2963974 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 6 1491 708 173 234 11 chr11 118880034 118880209 -2963647 + B3 SINE B2 3 216 0 6 1491 354 250 135 0 chr11 118880415 118880511 -2963345 + ID_B1 SINE B4 84 192 -32 6 1491 252 0 0 0 chr11 118881642 118881670 -2962186 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1491 261 275 12 24 chr11 118881670 118881745 -2962111 - B3 SINE B2 -31 185 112 6 1491 984 197 43 29 chr11 118881852 118882061 -2961795 - B3 SINE B2 -3 213 2 6 1491 344 274 0 0 chr11 118882115 118882203 -2961653 + ID4_ SINE ID 7 94 -58 6 1492 30 0 0 0 chr11 118884255 118884285 -2959571 + GC_rich Low_complexity Low_complexity 1 30 0 6 1492 34 24 0 0 chr11 118884325 118884366 -2959490 + GC_rich Low_complexity Low_complexity 1 41 0 6 1492 29 0 0 0 chr11 118884393 118884422 -2959434 + GC_rich Low_complexity Low_complexity 1 29 0 6 1492 879 168 199 11 chr11 118886812 118886993 -2956863 - B3 SINE B2 -1 215 1 6 1492 347 330 0 0 chr11 118886997 118887088 -2956768 - RSINE1 SINE B4 -69 96 6 6 1492 253 329 40 74 chr11 118887005 118887153 -2956703 - MER121 Unknown Unknown -40 372 230 6 1492 1591 143 159 19 chr11 118888717 118889031 -2954825 - RLTR15 LTR ERVK 0 359 2 6 1492 1753 11 0 0 chr11 118892604 118892794 -2951062 - B2_Mm1a SINE B2 -3 190 1 6 1492 253 281 0 0 chr11 118892960 118893017 -2950839 - PB1D10 SINE Alu -40 77 21 6 1492 979 101 7 7 chr11 118893277 118893417 -2950439 - B1_Mus1 SINE Alu -6 142 3 6 1492 243 0 0 0 chr11 118893902 118893929 -2949927 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 1492 254 179 31 10 chr11 118894112 118894208 -2949648 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 1492 455 245 0 7 chr11 118894224 118894372 -2949484 + (TA)n Simple_repeat Simple_repeat 1 147 0 6 1492 477 170 368 13 chr11 118894929 118895084 -2948772 - B3 SINE B2 -4 212 3 6 1492 234 0 0 0 chr11 118896058 118896084 -2947772 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1492 198 0 0 0 chr11 118897810 118897832 -2946024 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 6 1492 23 0 0 0 chr11 118898188 118898211 -2945645 + AT_rich Low_complexity Low_complexity 1 23 0 6 1492 195 186 0 0 chr11 118899399 118899442 -2944414 + A-rich Low_complexity Low_complexity 1 43 0 6 1492 231 36 0 0 chr11 118899702 118899730 -2944126 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1492 207 114 0 0 chr11 118901960 118901995 -2941861 + (CCG)n Simple_repeat Simple_repeat 3 37 0 6 1492 561 68 0 0 chr11 118904708 118904782 -2939074 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 6 1492 618 14 0 0 chr11 118906832 118906903 -2936953 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1492 230 250 70 42 chr11 118907281 118907352 -2936504 + MIRb SINE MIR 56 128 -140 6 1492 391 263 31 10 chr11 118907367 118907463 -2936393 - PB1D10 SINE Alu -8 109 12 6 1492 577 197 91 0 chr11 118907485 118907617 -2936239 - B1_Mur2 SINE Alu 0 149 6 6 1492 343 301 98 40 chr11 118907487 118907660 -2936196 - B4 SINE B4 -69 223 41 6 1492 198 0 0 0 chr11 118908828 118908850 -2935006 + (CCA)n Simple_repeat Simple_repeat 3 24 0 6 1492 483 33 0 0 chr11 118908850 118908911 -2934945 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1492 291 114 0 0 chr11 118910922 118910966 -2932890 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1492 306 0 0 0 chr11 118911809 118911843 -2932013 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1492 405 136 0 0 chr11 118915168 118915234 -2928622 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1492 387 0 0 0 chr11 118917476 118917519 -2926337 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 6 1492 23 0 0 0 chr11 118917885 118917908 -2925948 + GC_rich Low_complexity Low_complexity 1 23 0 6 1492 23 0 0 0 chr11 118918178 118918201 -2925655 + GC_rich Low_complexity Low_complexity 1 23 0 6 1492 396 0 0 0 chr11 118922266 118922310 -2921546 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1492 180 0 0 0 chr11 118922310 118922329 -2921527 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1492 231 114 0 0 chr11 118922659 118922703 -2921153 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 6 1492 687 181 71 39 chr11 118923460 118923615 -2920241 - RMER15 LTR ERVL -415 160 1 6 1492 2709 215 58 27 chr11 118923765 118924478 -2919378 - RMER15-int LTR ERVL -232 4767 4033 6 1492 6327 243 102 18 chr11 118924464 118925367 -2918489 - RMER15-int LTR ERVL -2600 2399 1426 6 1492 711 24 0 0 chr11 118925367 118925452 -2918404 + (TC)n Simple_repeat Simple_repeat 1 85 0 6 1492 6327 243 102 18 chr11 118925452 118926376 -2917480 - RMER15-int LTR ERVL -3574 1425 418 6 1492 923 81 81 0 chr11 118926388 118926524 -2917332 - B1_Mm SINE Alu 0 147 1 6 1492 374 161 161 0 chr11 118926574 118926655 -2917201 - RMER15-int LTR ERVL -4708 291 198 6 1492 1092 88 0 0 chr11 118926655 118926791 -2917065 + B1_Mus2 SINE Alu 1 136 -11 6 1492 256 106 21 0 chr11 118926869 118926916 -2916940 - RMER15-int LTR ERVL -4904 95 48 6 1492 2649 172 50 37 chr11 118926948 118927490 -2916366 - RMER15 LTR ERVL 0 575 27 6 1492 778 135 7 22 chr11 118927514 118927650 -2916206 - B1_Mur3 SINE Alu 0 149 16 6 1492 231 102 34 169 chr11 118927668 118927727 -2916129 - RMER15 LTR ERVL -524 51 1 6 1492 402 21 0 0 chr11 118928080 118928127 -2915729 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1492 221 231 51 8 chr11 118928917 118929035 -2914821 + CT-rich Low_complexity Low_complexity 3 125 0 6 1492 185 366 89 30 chr11 118929067 118929202 -2914654 - L2a LINE L2 0 3426 3284 6 1492 995 217 164 41 chr11 118929240 118929325 -2914531 + MTD LTR MaLR 51 129 -290 6 1492 1263 21 0 7 chr11 118929325 118929470 -2914386 + B1_Mm SINE Alu 1 144 -3 6 1492 261 0 0 0 chr11 118929470 118929499 -2914357 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1492 995 218 158 41 chr11 118929499 118929741 -2914115 + MTD LTR MaLR 130 405 -14 6 1492 208 127 36 0 chr11 118929775 118929830 -2914026 + A-rich Low_complexity Low_complexity 4 60 0 6 1492 397 266 238 37 chr11 118930345 118930509 -2913347 + B3A SINE B2 1 197 -1 6 1492 242 291 97 87 chr11 118930509 118930537 -2913319 - YREP_Mm Unknown Unknown -1476 336 230 6 1492 808 154 20 27 chr11 118930537 118930684 -2913172 + B1_Mus1 SINE Alu 2 147 -1 6 1492 242 291 97 87 chr11 118930684 118930705 -2913151 - YREP_Mm Unknown Unknown -1476 229 139 6 1492 968 78 21 0 chr11 118930712 118930853 -2913003 + (GAGAA)n Simple_repeat Simple_repeat 3 146 0 6 1492 612 215 0 71 chr11 118930865 118931020 -2912836 + B1_Mur3 SINE Alu 1 144 -5 6 1492 921 50 0 0 chr11 118931026 118931145 -2912711 - B1_Mus1 SINE Alu -28 120 2 6 1492 404 192 0 0 chr11 118931256 118931329 -2912527 - ID2 SINE ID -2 81 9 6 1492 273 57 0 0 chr11 118931370 118931405 -2912451 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1492 554 243 18 117 chr11 118931413 118931533 -2912323 - RSINE1 SINE B4 -17 148 42 6 1492 2188 144 66 14 chr11 118931533 118931898 -2911958 - ORR1C2 LTR MaLR 0 384 1 6 1492 554 243 18 117 chr11 118931898 118931940 -2911916 - RSINE1 SINE B4 -124 41 2 6 1492 509 112 57 29 chr11 118931959 118932134 -2911722 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1492 284 374 9 0 chr11 118932213 118932320 -2911536 - ID_B1 SINE B4 -37 187 80 6 1492 21 0 0 0 chr11 118932877 118932898 -2910958 + AT_rich Low_complexity Low_complexity 1 21 0 6 1492 503 208 94 0 chr11 118932923 118933029 -2910827 - RSINE1 SINE B4 -47 118 3 6 1492 261 333 23 17 chr11 118933030 118933207 -2910649 + CT-rich Low_complexity Low_complexity 1 178 0 6 1492 656 259 30 0 chr11 118936179 118936314 -2907542 + B3A SINE B2 2 140 -58 6 1492 321 26 0 0 chr11 118936329 118936367 -2907489 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1492 585 0 0 0 chr11 118936367 118936431 -2907425 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1492 678 251 122 49 chr11 118936459 118936664 -2907192 + ID_B1 SINE B4 1 220 -4 6 1492 1228 154 60 33 chr11 118936749 118936964 -2906892 + URR1B DNA MER1_type 5 225 0 6 1492 210 341 133 22 chr11 118937143 118937278 -2906578 + MIR SINE MIR 22 171 -91 6 1492 289 250 8 67 chr11 118938275 118938395 -2905461 + MER53 DNA hAT 26 138 -55 6 1492 611 245 95 0 chr11 118938398 118938545 -2905311 + ID_B1 SINE B4 2 162 -62 6 1492 479 142 32 32 chr11 118938557 118938681 -2905175 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 6 1492 835 247 54 0 chr11 118938698 118938884 -2904972 + B3 SINE B2 21 216 0 6 1492 23 0 0 0 chr11 118938890 118938913 -2904943 + AT_rich Low_complexity Low_complexity 1 23 0 6 1492 215 214 0 0 chr11 118940313 118940355 -2903501 + C-rich Low_complexity Low_complexity 2 43 0 6 1492 201 159 0 0 chr11 118941797 118941841 -2902015 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1492 309 51 0 0 chr11 118942677 118942716 -2901140 + (TGG)n Simple_repeat Simple_repeat 1 39 0 6 1492 210 71 0 0 chr11 118946443 118946471 -2897385 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 6 1492 315 0 0 0 chr11 118946473 118946508 -2897348 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1492 29 0 0 0 chr11 118946665 118946694 -2897162 + AT_rich Low_complexity Low_complexity 1 29 0 7 1492 238 238 48 0 chr11 118946930 118947014 -2896842 + C-rich Low_complexity Low_complexity 6 93 0 7 1492 219 235 0 67 chr11 118947158 118947263 -2896593 + C-rich Low_complexity Low_complexity 5 102 0 7 1492 23 0 0 0 chr11 118947432 118947455 -2896401 + GC_rich Low_complexity Low_complexity 1 23 0 7 1492 195 42 0 0 chr11 118947475 118947499 -2896357 + (CCG)n Simple_repeat Simple_repeat 2 25 0 7 1492 225 0 0 0 chr11 118947522 118947547 -2896309 + (CTCG)n Simple_repeat Simple_repeat 2 26 0 7 1492 210 219 47 0 chr11 118947702 118947766 -2896090 + G-rich Low_complexity Low_complexity 3 69 0 7 1492 708 35 0 0 chr11 118948366 118948453 -2895403 + (GA)n Simple_repeat Simple_repeat 2 88 0 7 1492 381 22 0 0 chr11 118949498 118949544 -2894312 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1492 222 37 0 0 chr11 118952425 118952452 -2891404 + (AGGGGG)n Simple_repeat Simple_repeat 4 30 0 7 1492 288 268 48 12 chr11 118953622 118953705 -2890151 + PB1D10 SINE Alu 21 106 -11 7 1492 465 239 64 9 chr11 118953868 118953978 -2889878 - PB1D10 SINE Alu -1 116 1 7 1492 667 261 6 6 chr11 118954203 118954361 -2889495 - ID_B1 SINE B4 -64 160 3 7 1492 822 196 0 0 chr11 118954395 118954538 -2889318 - B1_Mur1 SINE Alu 0 149 7 7 1492 268 332 25 116 chr11 118954415 118954594 -2889262 - MT2B LTR ERVL -326 275 69 7 1492 282 192 0 19 chr11 118954594 118954647 -2889209 + ID_B1 SINE B4 91 142 -82 7 1492 545 270 99 30 chr11 118954665 118954867 -2888989 - B3 SINE B2 0 216 1 7 1492 797 140 0 111 chr11 118954931 118955084 -2888772 - B1_Mus1 SINE Alu -8 140 5 7 1492 255 254 45 0 chr11 118955184 118955251 -2888605 + ID4 SINE ID 3 72 -11 7 1492 280 298 64 0 chr11 118955273 118955414 -2888442 - L1MB3 LINE L1 -22 6161 6012 7 1492 486 0 0 0 chr11 118955421 118955475 -2888381 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1492 609 264 19 58 chr11 118955515 118955720 -2888136 - B3A SINE B2 0 198 2 7 1492 318 216 14 0 chr11 118955801 118955875 -2887981 - L1MB3 LINE L1 -327 5856 5782 7 1492 684 220 21 0 chr11 118955987 118956128 -2887728 - B1_Mur2 SINE Alu 0 149 6 7 1492 249 163 0 0 chr11 118957961 118958010 -2885846 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 7 1492 376 195 16 31 chr11 118958028 118958155 -2885701 + CT-rich Low_complexity Low_complexity 2 126 0 7 1492 360 0 0 0 chr11 118958559 118958599 -2885257 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1492 378 0 0 0 chr11 118958599 118958640 -2885216 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 1492 246 309 83 18 chr11 118958904 118959072 -2884784 - RMER17D LTR ERVK -350 539 361 7 1492 616 59 0 12 chr11 118959276 118959352 -2884504 + BC1_Mm scRNA scRNA 1 76 -76 7 1492 1356 58 0 0 chr11 118959352 118959526 -2884330 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 7 1492 225 226 113 0 chr11 118959530 118959592 -2884264 - PB1D10 SINE Alu -13 104 36 7 1492 230 310 66 58 chr11 118959648 118959819 -2884037 + L2a LINE L2 3180 3398 -28 7 1492 356 270 175 0 chr11 118959878 118960004 -2883852 + MER63D DNA AcHobo 4 151 -910 7 1492 716 181 69 0 chr11 118960093 118960237 -2883619 - RMER15 LTR ERVL 0 575 422 7 1492 274 350 66 33 chr11 118960352 118960473 -2883383 - ID_B1 SINE B4 -40 184 60 7 1492 23 0 0 0 chr11 118960539 118960562 -2883294 + AT_rich Low_complexity Low_complexity 1 23 0 7 1492 962 149 0 7 chr11 118960577 118960719 -2883137 - B1_Mus1 SINE Alu -7 141 1 7 1492 558 237 3 0 chr11 118960755 118961072 -2882784 + (TG)n Simple_repeat Simple_repeat 1 318 0 7 1492 604 242 76 96 chr11 118961401 118961477 -2882379 + B3A SINE B2 1 71 -127 7 1492 414 0 0 0 chr11 118961477 118961523 -2882333 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1492 604 242 76 96 chr11 118961523 118961643 -2882213 + B3A SINE B2 72 193 -5 7 1492 1083 84 0 14 chr11 118961656 118961789 -2882067 + B1_Mus2 SINE Alu 2 134 -13 7 1492 225 0 0 0 chr11 118961789 118961814 -2882042 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 1492 1009 243 4 49 chr11 118961850 118961920 -2881936 + B3 SINE B2 2 71 -145 7 1492 360 0 0 0 chr11 118961920 118961960 -2881896 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1492 1009 243 4 49 chr11 118961960 118962114 -2881742 + B3 SINE B2 72 216 0 7 1492 2406 198 63 87 chr11 118962636 118963503 -2880353 + MTC-int LTR MaLR 20 1084 -174 7 1492 885 178 206 6 chr11 118963503 118963678 -2880178 - B3 SINE B2 -6 210 1 7 1492 2406 187 55 94 chr11 118963678 118963709 -2880147 + MTC-int LTR MaLR 1085 1120 -138 7 1492 1421 62 28 0 chr11 118963709 118963888 -2879968 - B2_Mm1t SINE B2 -8 185 2 7 1492 2406 187 55 94 chr11 118963888 118964011 -2879845 + MTC-int LTR MaLR 1121 1219 -39 7 1492 433 105 13 26 chr11 118964011 118964089 -2879767 + MTC LTR MaLR 3 79 -342 7 1492 349 322 100 17 chr11 118964091 118964271 -2879585 + B2_Mm2 SINE B2 1 195 0 7 1492 1046 149 6 161 chr11 118964249 118964414 -2879442 + MTC LTR MaLR 41 207 -214 7 1492 697 105 105 0 chr11 118964414 118964538 -2879318 + Lx2 LINE L1 6861 6997 0 7 1492 1046 153 7 161 chr11 118964538 118964648 -2879208 + MTC LTR MaLR 194 275 -125 7 1492 215 217 22 0 chr11 118965154 118965200 -2878656 - MIRc SINE MIR -143 125 79 7 1492 267 269 16 7 chr11 118965549 118965627 -2878229 - ID4_ SINE ID -64 88 12 7 1492 476 239 55 9 chr11 118965661 118965771 -2878085 + PB1D7 SINE Alu 1 115 -5 7 1492 279 0 0 0 chr11 118965804 118965835 -2878021 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 7 1492 223 277 133 38 chr11 118965868 118965973 -2877883 - PB1D10 SINE Alu -2 115 1 7 1492 620 218 181 48 chr11 118966021 118966209 -2877647 + B3 SINE B2 2 214 -2 7 1492 1479 56 17 0 chr11 118966217 118966397 -2877459 + B2_Mm2 SINE B2 1 183 -12 7 1492 355 311 43 11 chr11 118966415 118966600 -2877256 - MER33 DNA MER1_type -65 259 69 7 1492 364 368 64 32 chr11 118967501 118967720 -2876136 + MLT1C LTR MaLR 29 254 -213 7 1492 405 0 0 0 chr11 118967810 118967855 -2876001 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1492 501 238 26 107 chr11 118969732 118969905 -2873951 + B3 SINE B2 56 216 0 7 1492 256 125 0 40 chr11 118970150 118970225 -2873631 + T-rich Low_complexity Low_complexity 4 75 0 7 1492 23 0 0 0 chr11 118970289 118970312 -2873544 + AT_rich Low_complexity Low_complexity 1 23 0 7 1492 1330 112 0 11 chr11 118970312 118970501 -2873355 + B2_Mm2 SINE B2 3 189 -6 7 1492 310 227 66 13 chr11 118970513 118970589 -2873267 - RSINE1 SINE B4 0 165 86 7 1492 231 228 18 0 chr11 118970693 118970750 -2873106 + GA-rich Low_complexity Low_complexity 1 58 0 7 1492 902 141 0 18 chr11 118971406 118971444 -2872412 + polypurine Low_complexity Low_complexity 4 40 0 7 1492 1014 148 0 0 chr11 118971444 118971620 -2872236 + (GGAA)n Simple_repeat Simple_repeat 2 177 0 7 1492 902 141 0 18 chr11 118971620 118971747 -2872109 + polypurine Low_complexity Low_complexity 41 166 0 7 1492 834 246 43 0 chr11 118971759 118971903 -2871953 + B4 SINE B4 69 221 -71 7 1492 894 241 4 80 chr11 118971903 118972128 -2871728 + B3 SINE B2 1 208 -8 7 1492 834 246 43 0 chr11 118972128 118972190 -2871666 + B4 SINE B4 222 283 -9 7 1492 632 224 0 8 chr11 118972196 118972436 -2871420 + (CA)n Simple_repeat Simple_repeat 1 237 0 7 1492 2309 155 62 15 chr11 118973443 118973843 -2870013 + MTC LTR MaLR 1 419 -2 7 1492 593 235 67 31 chr11 118974024 118974217 -2869639 - ORR1C2 LTR MaLR -6 378 179 7 1492 614 92 0 62 chr11 118974225 118974387 -2869469 + (CAGG)n Simple_repeat Simple_repeat 3 154 0 7 1492 1143 198 20 16 chr11 118974391 118974402 -2869454 - ORR1D1 LTR MaLR -121 253 243 7 1492 1266 62 0 0 chr11 118974402 118974579 -2869277 + (CAGG)n Simple_repeat Simple_repeat 3 179 0 7 1492 221 0 35 0 chr11 118974580 118974609 -2869247 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 7 1492 1143 198 20 16 chr11 118974609 118974847 -2869009 - ORR1D1 LTR MaLR -132 242 2 7 1492 846 153 47 0 chr11 118974847 118974997 -2868859 - ID_B1 SINE B4 -66 158 2 7 1492 2668 132 93 68 chr11 118975666 118975772 -2868084 - RLTR11A2 LTR ERVK 0 527 452 7 1492 1056 91 14 14 chr11 118975772 118975917 -2867939 - B1_Mus1 SINE Alu -2 146 2 7 1492 1280 92 17 11 chr11 118975918 118976094 -2867762 - B2_Mm2 SINE B2 -18 177 1 7 1492 2668 132 93 68 chr11 118976094 118976499 -2867357 - RLTR11A2 LTR ERVK -76 451 1 7 1492 862 233 49 5 chr11 118977270 118977473 -2866383 - B3 SINE B2 -3 213 2 7 1492 476 221 0 26 chr11 118977512 118977659 -2866197 + B1_Mur1 SINE Alu 38 149 0 7 1492 608 200 7 0 chr11 118977818 118977953 -2865903 + T-rich Low_complexity Low_complexity 3 138 0 7 1492 554 292 7 7 chr11 118977962 118978110 -2865746 - B1F SINE Alu -1 148 1 7 1492 230 156 62 0 chr11 118978125 118978189 -2865667 + CT-rich Low_complexity Low_complexity 1 68 0 7 1492 650 209 157 0 chr11 118978189 118978380 -2865476 - ID_B1 SINE B4 -2 222 2 7 1492 317 246 0 14 chr11 118978462 118978536 -2865320 - ID4 SINE ID -9 74 2 7 1492 324 106 0 0 chr11 118978635 118978682 -2865174 - HAL1-3A_ME LINE L1 -836 2022 1976 7 1492 540 184 0 0 chr11 118978685 118978832 -2865024 + (TG)n Simple_repeat Simple_repeat 2 148 0 7 1492 785 183 3 0 chr11 118978859 118979155 -2864701 + (TG)n Simple_repeat Simple_repeat 1 297 0 7 1492 279 114 0 0 chr11 118979187 118979231 -2864625 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1492 598 207 9 0 chr11 118979241 118979357 -2864499 - RSINE1 SINE B4 -42 123 7 7 1492 477 292 8 16 chr11 118981201 118981323 -2862533 + RSINE1 SINE B4 2 122 -43 7 1492 756 273 21 21 chr11 118981408 118981599 -2862257 + B4 SINE B4 8 198 -94 7 1492 727 185 0 0 chr11 118981498 118981617 -2862239 + B1_Mur1 SINE Alu 9 127 -22 7 1492 479 127 0 0 chr11 118981617 118981688 -2862168 + B1_Mur1 SINE Alu 70 140 -9 7 1492 268 24 49 0 chr11 118981798 118981839 -2862017 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1492 414 0 0 0 chr11 118982100 118982146 -2861710 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1492 840 234 141 0 chr11 118982146 118982373 -2861483 - B4 SINE B4 -23 269 11 7 1492 474 298 19 87 chr11 118982392 118982610 -2861246 - ID_B1 SINE B4 -45 247 40 8 1492 870 282 96 15 chr11 118982622 118982892 -2860964 - B4A SINE B4 0 292 1 8 1492 300 227 86 54 chr11 118982917 118983010 -2860846 + MT2B LTR ERVL 155 250 -351 8 1492 668 113 168 8 chr11 118982929 118983054 -2860802 + B1_Mur4 SINE Alu 6 150 0 8 1492 278 50 0 24 chr11 118983057 118983098 -2860758 + (GGA)n Simple_repeat Simple_repeat 3 42 0 8 1492 272 333 112 43 chr11 118984087 118984275 -2859581 - MLT1C LTR MaLR -152 315 115 8 1492 214 250 120 111 chr11 118985630 118985747 -2858109 - PB1D7 SINE Alu -1 119 2 8 1492 283 321 165 12 chr11 118986372 118986542 -2857314 - MIRb SINE MIR -55 207 12 8 1492 297 51 0 0 chr11 118987287 118987326 -2856530 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1492 356 319 36 48 chr11 118988199 118988449 -2855407 - L1MB7 LINE L1 -10 6174 5928 8 1492 298 219 14 14 chr11 118988906 118988980 -2854876 + ID4 SINE ID 10 83 0 8 1492 287 303 13 37 chr11 118991073 118991187 -2852669 + MIRc SINE MIR 69 182 -86 8 1492 240 149 0 82 chr11 118991691 118991764 -2852092 + C-rich Low_complexity Low_complexity 4 70 0 8 1492 218 197 0 0 chr11 118992160 118992211 -2851645 - MIR SINE MIR -117 159 103 8 1492 211 274 32 16 chr11 118992386 118992449 -2851407 - MIRb SINE MIR -81 187 124 8 1492 1406 82 38 0 chr11 118992546 118992729 -2851127 + B2_Mm2 SINE B2 1 190 -5 8 1492 282 266 47 0 chr11 118992751 118992815 -2851041 + ID4_ SINE ID 14 80 -3 8 1492 940 266 0 10 chr11 118992832 118993041 -2850815 + B3 SINE B2 3 209 -7 8 1492 556 277 222 13 chr11 118993055 118993289 -2850567 + B4A SINE B4 10 292 0 8 1492 927 242 19 19 chr11 118993556 118993771 -2850085 + B3 SINE B2 2 216 0 8 1492 233 248 32 127 chr11 118994362 118994415 -2849441 + RMER17C LTR ERVK 184 236 -174 8 1492 1083 96 0 33 chr11 118994415 118994566 -2849290 - B1_Mus1 SINE Alu -1 147 2 8 1492 233 248 32 127 chr11 118994566 118994669 -2849187 + RMER17C LTR ERVK 237 325 -85 8 1492 279 0 0 0 chr11 118994931 118994962 -2848894 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 8 1492 349 327 26 45 chr11 118996633 118996787 -2847069 + MIR SINE MIR 37 187 -75 8 1492 359 299 74 27 chr11 118998078 118998226 -2845630 + RMER15 LTR ERVL 405 559 -16 8 1492 312 252 74 27 chr11 118998378 118998510 -2845346 - MIR SINE MIR -89 179 51 8 1492 926 221 9 55 chr11 118998625 118998845 -2845011 - ID_B1 SINE B4 -14 210 1 8 1492 197 336 14 22 chr11 118999004 118999132 -2844724 - MIR SINE MIR -64 198 71 8 1492 1063 22 0 7 chr11 119000798 119000933 -2842923 + B1_Mm SINE Alu 9 142 -5 1 1492 251 93 23 0 chr11 119008393 119008436 -2835420 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 2 1492 243 250 45 45 chr11 119011318 119011406 -2832450 - B3A SINE B2 -8 190 103 3 1492 471 242 80 36 chr11 119011378 119011515 -2832341 - B4 SINE B4 -79 213 71 4 1492 453 225 42 75 chr11 119011495 119011615 -2832241 - PB1D9 SINE Alu -3 117 2 5 1492 457 262 14 91 chr11 119011615 119011710 -2832146 - B4 SINE B4 -206 86 3 6 1492 321 26 0 0 chr11 119012691 119012729 -2831127 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1492 710 217 158 16 chr11 119012841 119013024 -2830832 - B3 SINE B2 -6 210 2 8 1492 710 256 21 43 chr11 119013024 119013212 -2830644 - B3A SINE B2 -1 197 14 9 186 481 288 169 6 chr11 119013228 119013406 -2830450 - B4A SINE B4 -85 207 1 1 1493 310 352 0 16 chr11 119015061 119015188 -2828668 + (CA)n Simple_repeat Simple_repeat 2 126 0 1 1493 1338 108 11 0 chr11 119015543 119015728 -2828128 + B2_Mm1t SINE B2 1 187 -6 1 1493 719 187 65 0 chr11 119015741 119015880 -2827976 + B1_Mur3 SINE Alu 2 149 0 1 1493 398 225 9 0 chr11 119016723 119016834 -2827022 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 1493 278 244 0 23 chr11 119016869 119016957 -2826899 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 1 1493 253 329 14 0 chr11 119020537 119020610 -2823246 + MIRc SINE MIR 85 158 -110 1 1493 234 283 28 99 chr11 119020844 119020985 -2822871 - B4A SINE B4 -2 290 160 1 1493 1098 257 98 0 chr11 119021143 119021439 -2822417 - Lx6 LINE L1 -1 7459 7135 1 1493 449 311 76 5 chr11 119021470 119021654 -2822202 - MIRb SINE MIR -23 245 49 1 1493 323 248 136 8 chr11 119022426 119022544 -2821312 + L1MC1 LINE L1 5927 6059 -274 2 1493 244 331 62 35 chr11 119022718 119022862 -2820994 + B1F2 SINE Alu 1 148 -1 2 1493 1145 75 0 0 chr11 119023232 119023378 -2820478 - B1_Mus2 SINE Alu 0 147 2 2 1493 563 271 0 81 chr11 119023385 119023558 -2820298 + B3A SINE B2 38 196 -2 2 1493 260 287 306 0 chr11 119023568 119023676 -2820180 + ID_B1 SINE B4 81 221 -3 2 1493 351 0 0 0 chr11 119023690 119023729 -2820127 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2 1493 963 176 119 0 chr11 119024078 119024271 -2819585 + B3 SINE B2 1 216 0 2 1493 235 376 0 0 chr11 119024431 119024516 -2819340 + L1MD LINE L1 4210 4294 -1852 2 1493 644 250 167 4 chr11 119024610 119024855 -2819001 + B4A SINE B4 8 292 0 2 1493 276 285 40 20 chr11 119024991 119025103 -2818753 + L1M5 LINE L1 4919 5032 -1108 2 1493 600 273 12 53 chr11 119025120 119025290 -2818566 + RSINE1 SINE B4 3 165 0 3 1493 228 269 71 44 chr11 119025471 119025584 -2818272 + L1M5 LINE L1 5170 5285 -861 2 1493 398 260 10 0 chr11 119025593 119025693 -2818163 + PB1D10 SINE Alu 1 101 -16 3 1493 311 142 22 66 chr11 119026001 119026137 -2817719 + (TG)n Simple_repeat Simple_repeat 2 131 0 3 1493 305 316 97 0 chr11 119026227 119026341 -2817515 - PB1 SINE Alu -2 125 1 3 1493 1046 236 20 5 chr11 119026393 119026597 -2817259 - B3 SINE B2 -9 207 1 3 1493 398 359 53 18 chr11 119026602 119026883 -2816973 - L1MB3 LINE L1 -45 6138 5848 3 1493 231 36 0 0 chr11 119026926 119026954 -2816902 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 3 1493 306 295 237 42 chr11 119027011 119027430 -2816426 - L1MB3 LINE L1 -533 5656 5162 3 1493 225 0 0 0 chr11 119027430 119027455 -2816401 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1493 235 240 132 57 chr11 119027455 119027503 -2816353 - L1MB3 LINE L1 -985 5161 5105 3 1493 628 291 20 25 chr11 119027753 119027784 -2816072 - B3 SINE B2 -5 211 182 3 1493 950 196 127 11 chr11 119027784 119027965 -2815891 - B3 SINE B2 -13 203 2 3 1493 628 291 20 25 chr11 119027965 119027990 -2815866 - B3 SINE B2 -35 181 156 3 1493 279 0 0 0 chr11 119027990 119028021 -2815835 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1493 711 196 22 1 chr11 119028021 119028164 -2815692 - B3A SINE B2 -61 155 12 3 1493 201 74 0 0 chr11 119028455 119028482 -2815374 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1493 630 131 62 35 chr11 119028643 119028775 -2815081 + ID_B1 SINE B4 109 241 -51 4 1493 243 339 44 18 chr11 119029093 119029207 -2814649 - MLT1C LTR MaLR -7 460 344 4 1493 260 380 78 26 chr11 119029240 119029661 -2814195 + L1MB5 LINE L1 4551 4993 -1153 4 1493 315 0 0 0 chr11 119029693 119029728 -2814128 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1493 225 0 0 0 chr11 119029728 119029753 -2814103 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 4 1493 340 311 82 33 chr11 119029766 119029949 -2813907 + L1MB5 LINE L1 5911 6102 -72 4 1493 1368 82 38 0 chr11 119030617 119030800 -2813056 - B2_Mm2 SINE B2 -4 191 2 4 1493 360 324 104 26 chr11 119030819 119031050 -2812806 + B4 SINE B4 24 272 -20 4 1493 276 342 124 51 chr11 119031311 119031545 -2812311 + MER2 DNA MER2_type 91 341 -4 4 1493 374 133 8 50 chr11 119031838 119031957 -2811899 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 1493 283 154 0 83 chr11 119031993 119032149 -2811707 + (TG)n Simple_repeat Simple_repeat 1 143 0 5 1493 250 223 19 46 chr11 119032152 119032260 -2811596 + (TATG)n Simple_repeat Simple_repeat 4 108 0 5 1493 752 233 129 24 chr11 119032262 119032517 -2811339 - B4A SINE B4 0 292 11 5 1493 368 326 74 0 chr11 119032661 119032796 -2811060 + RSINE1 SINE B4 21 165 0 5 1493 415 283 44 12 chr11 119032806 119032949 -2810907 + MTEb LTR MaLR 1 158 -221 5 1493 2434 171 65 18 chr11 119032951 119033445 -2810411 + RMER13A LTR ERVK 1 517 -343 5 1493 609 244 89 6 chr11 119033849 119034018 -2809838 + MTEb LTR MaLR 191 373 -6 5 1493 327 282 73 9 chr11 119034188 119034355 -2809501 + L1MB3 LINE L1 5942 6114 -69 5 1493 487 199 181 15 chr11 119035831 119035964 -2807892 + MTD LTR MaLR 1 155 -264 5 1493 761 248 74 23 chr11 119036263 119036478 -2807378 + MTD LTR MaLR 194 419 0 5 1493 432 0 0 0 chr11 119036810 119036858 -2806998 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1493 596 209 135 0 chr11 119036878 119037026 -2806830 - B3 SINE B2 -47 169 2 5 1493 519 234 19 0 chr11 119037034 119037141 -2806715 - PB1D10 SINE Alu -7 110 2 6 1493 387 0 0 0 chr11 119037725 119037768 -2806088 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1493 192 77 0 0 chr11 119038161 119038187 -2805669 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 6 1493 457 295 38 25 chr11 119038970 119039130 -2804726 + RSINE1 SINE B4 4 165 0 6 1493 1016 228 47 70 chr11 119040800 119041208 -2802648 - ORR1D1 LTR MaLR -8 386 2 6 1493 435 268 48 34 chr11 119041290 119041437 -2802419 - ID_B1 SINE B4 0 224 76 6 1493 232 246 77 0 chr11 119041948 119042013 -2801843 + PB1D7 SINE Alu 51 120 0 6 1493 495 0 0 0 chr11 119042489 119042544 -2801312 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 6 1493 315 0 0 0 chr11 119042545 119042580 -2801276 + (CAGG)n Simple_repeat Simple_repeat 1 35 0 6 1493 231 339 0 0 chr11 119043138 119043203 -2800653 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1493 663 187 269 0 chr11 119043203 119043385 -2800471 + B4A SINE B4 2 232 -60 7 1493 285 346 14 86 chr11 119043505 119043644 -2800212 + B4A SINE B4 150 278 -14 7 1493 254 336 27 20 chr11 119043663 119043809 -2800047 + (CA)n Simple_repeat Simple_repeat 2 148 0 7 1493 258 263 231 42 chr11 119043855 119043998 -2799858 - ID_B1 SINE B4 -54 170 1 7 1493 237 322 0 72 chr11 119044328 119044425 -2799431 - MLT1C LTR MaLR -325 142 53 7 1493 867 294 9 0 chr11 119046024 119046245 -2797611 - ID_B1 SINE B4 0 224 2 7 1493 1108 216 31 142 chr11 119046787 119046879 -2796977 - B4A SINE B4 -8 284 221 7 1493 690 238 52 36 chr11 119046879 119047071 -2796785 - B3A SINE B2 0 198 4 7 1493 1108 216 31 142 chr11 119047071 119047296 -2796560 - B4A SINE B4 -72 220 2 7 1493 237 280 0 0 chr11 119047331 119047438 -2796418 + (TG)n Simple_repeat Simple_repeat 2 108 0 7 1493 717 203 0 0 chr11 119047461 119047748 -2796108 + (TG)n Simple_repeat Simple_repeat 1 287 0 7 1493 636 338 91 8 chr11 119048705 119048970 -2794886 - MER2 DNA MER2_type -58 287 1 7 1493 197 221 15 0 chr11 119050441 119050509 -2793347 + C-rich Low_complexity Low_complexity 6 74 0 8 1493 470 191 8 98 chr11 119050534 119050656 -2793200 - PB1D10 SINE Alu 0 117 7 8 1493 743 230 62 0 chr11 119050795 119050973 -2792883 - B3 SINE B2 -2 214 26 8 1493 220 326 159 28 chr11 119051048 119051193 -2792663 + B4A SINE B4 24 187 -105 8 1493 466 289 13 53 chr11 119051264 119051414 -2792442 + ID_B1 SINE B4 75 218 -6 8 1493 1597 192 194 0 chr11 119054163 119054461 -2789395 + Lx9 LINE L1 7166 7476 -168 8 1493 360 0 0 0 chr11 119054461 119054501 -2789355 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1493 1597 192 194 0 chr11 119054501 119054598 -2789258 + Lx9 LINE L1 7477 7637 -7 8 1493 238 314 130 31 chr11 119054812 119054973 -2788883 + L1MD2 LINE L1 5217 5393 -753 8 1493 374 186 0 41 chr11 119055068 119055141 -2788715 + PB1 SINE Alu 25 94 -33 8 1493 780 275 199 47 chr11 119055163 119055379 -2788477 + Lx8 LINE L1 6920 7178 -295 8 1493 480 35 0 0 chr11 119055379 119055437 -2788419 + (TCC)n Simple_repeat Simple_repeat 1 58 0 9 1493 780 275 199 47 chr11 119055437 119055647 -2788209 + Lx8 LINE L1 7179 7410 -63 8 1493 294 238 23 52 chr11 119055661 119055834 -2788022 + GA-rich Low_complexity Low_complexity 3 170 0 9 1493 226 294 12 53 chr11 119055869 119056038 -2787818 + GA-rich Low_complexity Low_complexity 3 164 0 9 1493 344 317 19 9 chr11 119056089 119056194 -2787662 + B3A SINE B2 1 106 -92 9 1493 621 275 71 88 chr11 119056252 119056603 -2787253 + L1MD2 LINE L1 5519 5863 -496 8 1493 185 180 0 20 chr11 119056726 119056777 -2787079 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1493 276 100 0 0 chr11 119057018 119057058 -2786798 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1493 420 297 133 0 chr11 119057058 119057186 -2786670 - RSINE1 SINE B4 -18 147 3 9 1493 462 259 136 0 chr11 119057311 119057458 -2786398 - ID_B1 SINE B4 -9 215 49 9 1493 762 178 15 7 chr11 119057501 119057637 -2786219 - B1_Mur2 SINE Alu -1 148 12 9 1493 437 273 27 0 chr11 119058023 119058133 -2785723 - PB1D7 SINE Alu -1 119 7 9 1493 597 152 39 39 chr11 119058162 119058292 -2785564 - B3 SINE B2 -1 215 86 9 1493 207 309 0 12 chr11 119058465 119058547 -2785309 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1493 434 267 14 108 chr11 119058559 119058784 -2785072 - B4A SINE B4 -25 199 1 1 1493 980 128 0 39 chr11 119058784 119058939 -2784917 - B1_Mur4 SINE Alu -1 149 1 1 1493 213 241 69 0 chr11 119059498 119059556 -2784300 - MIRc SINE MIR -119 149 88 1 1493 751 214 87 16 chr11 119061326 119061479 -2782377 + B3A SINE B2 1 169 -29 1 1493 357 24 0 0 chr11 119061479 119061521 -2782335 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1493 751 214 87 16 chr11 119061521 119061552 -2782304 + B3A SINE B2 170 198 0 1 1493 1098 92 0 14 chr11 119061569 119061713 -2782143 + B1_Mus2 SINE Alu 4 145 -2 1 1493 591 260 191 24 chr11 119061750 119061959 -2781897 + B4A SINE B4 49 292 0 1 1493 252 0 0 0 chr11 119062059 119062087 -2781769 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1493 558 0 0 0 chr11 119062540 119062602 -2781254 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1493 279 0 0 0 chr11 119062614 119062645 -2781211 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1493 714 242 51 0 chr11 119062645 119062802 -2781054 - B3 SINE B2 -50 166 2 1 1493 584 133 38 9 chr11 119062806 119062912 -2780944 - B1_Mur2 SINE Alu -6 143 35 1 1493 228 203 29 72 chr11 119062853 119062922 -2780934 - 4.5SRNA scRNA scRNA -6 88 23 1 1493 255 353 33 82 chr11 119063058 119063123 -2780733 - MER3 DNA MER1_type -22 187 126 1 1493 636 281 111 0 chr11 119063123 119063322 -2780534 + ID_B1 SINE B4 4 224 0 1 1493 255 353 33 82 chr11 119063322 119063438 -2780418 - MER3 DNA MER1_type -84 125 15 1 1493 634 184 139 33 chr11 119063588 119063768 -2780088 - B3 SINE B2 -17 199 1 1 1493 318 225 214 14 chr11 119063821 119063961 -2779895 - B4A SINE B4 -124 168 1 1 1493 228 274 12 37 chr11 119064269 119064432 -2779424 + (CA)n Simple_repeat Simple_repeat 1 159 0 1 1493 251 71 24 0 chr11 119064958 119065000 -2778856 + (CCCTG)n Simple_repeat Simple_repeat 1 43 0 1 1493 360 245 37 9 chr11 119065191 119065298 -2778558 + B1F SINE Alu 10 119 -30 1 1493 333 282 80 8 chr11 119065298 119065316 -2778540 + ID_B1 SINE B4 91 224 0 1 1493 486 283 62 0 chr11 119065384 119065529 -2778327 + ID_B1 SINE B4 1 154 -70 1 1493 377 140 204 0 chr11 119065529 119065622 -2778234 + Lx5 LINE L1 6939 7050 0 1 1493 234 0 0 0 chr11 119065689 119065715 -2778141 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1493 288 0 0 0 chr11 119065715 119065746 -2778110 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1493 342 172 59 11 chr11 119065983 119066076 -2777780 + B2_Mm2 SINE B2 21 121 -95 1 1493 705 236 71 15 chr11 119066411 119066609 -2777247 - B3 SINE B2 -5 211 3 1 1493 327 327 73 0 chr11 119066647 119066757 -2777099 - RSINE1 SINE B4 -35 130 13 1 1493 245 196 20 0 chr11 119066775 119066826 -2777030 + MLT1A1 LTR MaLR 345 396 -12 1 1493 1152 53 0 0 chr11 119067376 119067526 -2776330 + B2_Mm2 SINE B2 1 150 -45 1 1493 1710 26 0 0 chr11 119067560 119067751 -2776105 + B2_Mm1a SINE B2 1 191 -2 1 1493 22 0 0 0 chr11 119067796 119067818 -2776038 + AT_rich Low_complexity Low_complexity 1 22 0 1 1493 229 309 92 31 chr11 119067873 119068003 -2775853 - MIRb SINE MIR -98 170 33 1 1493 3105 158 73 2 chr11 119068762 119069295 -2774561 + RMER15 LTR ERVL 5 575 0 1 1493 416 49 0 0 chr11 119069636 119069697 -2774159 + B1_Mm SINE Alu 87 147 0 1 1493 350 292 0 11 chr11 119072326 119072416 -2771440 + GA-rich Low_complexity Low_complexity 1 89 0 1 1493 1441 66 22 0 chr11 119072506 119072687 -2771169 - B2_Mm2 SINE B2 -9 186 2 1 1493 1000 113 25 0 chr11 119072695 119072854 -2771002 - B2_Mm2 SINE B2 -8 187 25 1 1493 24 0 0 0 chr11 119072862 119072886 -2770970 + AT_rich Low_complexity Low_complexity 1 24 0 1 1493 219 150 0 0 chr11 119072964 119073004 -2770852 + (TGGGGG)n Simple_repeat Simple_repeat 6 45 0 1 1493 382 328 16 0 chr11 119073082 119073207 -2770649 + MARNA DNA Mariner 290 416 -170 1 1493 283 311 67 0 chr11 119073602 119073692 -2770164 + PB1D10 SINE Alu 3 98 -19 1 1493 612 302 7 0 chr11 119073716 119073865 -2769991 + RSINE1 SINE B4 2 151 -14 1 1493 327 25 0 0 chr11 119073867 119073907 -2769949 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1493 718 236 96 24 chr11 119074026 119074234 -2769622 + ID_B1 SINE B4 2 224 0 1 1493 520 327 123 71 chr11 119074429 119074794 -2769062 + MLT1B LTR MaLR 3 386 -4 1 1493 578 163 453 12 chr11 119074967 119075210 -2768646 + MTD LTR MaLR 69 418 -1 1 1493 275 218 0 26 chr11 119076173 119076324 -2767532 + G-rich Low_complexity Low_complexity 3 149 0 1 1493 320 240 18 55 chr11 119078244 119078354 -2765502 + RSINE1 SINE B4 4 109 -56 1 1493 229 213 98 0 chr11 119078548 119078609 -2765247 + L1MC LINE L1 5678 5744 -589 1 1493 235 368 0 0 chr11 119078929 119078997 -2764859 + B4A SINE B4 219 286 -6 1 1493 353 294 6 0 chr11 119079041 119079218 -2764638 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1493 1302 218 89 13 chr11 119079260 119079632 -2764224 + BGLII_B LTR ERVK 1 400 -41 1 1493 273 263 23 222 chr11 119079628 119079804 -2764052 + MTC LTR MaLR 279 419 0 1 1493 1219 54 0 0 chr11 119079861 119080008 -2763848 + B1_Mm SINE Alu 1 147 0 1 1493 578 71 12 0 chr11 119080582 119080666 -2763190 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1493 463 228 169 60 chr11 119080716 119080964 -2762892 - B4 SINE B4 -17 275 1 1 1493 389 221 0 55 chr11 119080985 119081076 -2762780 - B1_Mur1 SINE Alu -2 147 62 1 1493 665 301 34 68 chr11 119081709 119082005 -2761851 + B4A SINE B4 7 292 0 1 1493 451 264 35 21 chr11 119082018 119082161 -2761695 + B4 SINE B4 1 145 -147 1 1493 466 324 12 56 chr11 119082198 119082416 -2761440 + B4A SINE B4 82 292 0 1 1493 907 233 59 5 chr11 119082494 119082697 -2761159 + B3 SINE B2 3 216 0 1 1493 335 141 0 15 chr11 119083394 119083459 -2760397 + C-rich Low_complexity Low_complexity 3 66 0 1 1493 1538 78 10 0 chr11 119083919 119084112 -2759744 + B2_Mm2 SINE B2 1 195 0 1 1493 298 234 82 175 chr11 119085434 119085605 -2758251 + B4 SINE B4 1 155 -137 1 1493 299 308 0 0 chr11 119085677 119085755 -2758101 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1493 201 39 0 0 chr11 119085795 119085821 -2758035 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 1493 194 237 13 0 chr11 119085821 119085897 -2757959 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1493 189 107 0 0 chr11 119085934 119085962 -2757894 + (TATG)n Simple_repeat Simple_repeat 3 30 0 1 1493 329 299 0 99 chr11 119086802 119086943 -2756913 + ID_B1 SINE B4 57 183 -41 1 1493 226 324 0 56 chr11 119086964 119087036 -2756820 + ID2 SINE ID 16 83 0 1 1493 864 244 169 14 chr11 119087300 119087578 -2756278 + Lx8 LINE L1 6977 7297 -176 1 1493 408 252 0 90 chr11 119087582 119087704 -2756152 + PB1D7 SINE Alu 5 115 -5 1 1493 666 254 28 0 chr11 119087845 119087987 -2755869 - B1F SINE Alu -1 148 3 1 1493 574 274 0 71 chr11 119088245 119088414 -2755442 + RSINE1 SINE B4 9 165 0 1 1493 201 147 0 0 chr11 119089751 119089785 -2754071 + (CCG)n Simple_repeat Simple_repeat 1 34 0 1 1493 225 127 0 73 chr11 119089824 119089892 -2753964 + (CCCCG)n Simple_repeat Simple_repeat 1 63 0 1 1493 736 290 74 17 chr11 119091374 119091634 -2752222 - B4A SINE B4 -1 291 25 1 1493 633 322 38 130 chr11 119092137 119092561 -2751295 - MTC LTR MaLR -15 406 22 1 1493 1170 240 73 9 chr11 119093676 119093991 -2749865 - MTD LTR MaLR -20 399 65 1 1493 1119 58 14 0 chr11 119094235 119094373 -2749483 - B1_Mus2 SINE Alu -7 140 1 1 1493 241 299 0 75 chr11 119094401 119094495 -2749361 + PB1D10 SINE Alu 1 87 -30 1 1493 324 0 0 0 chr11 119094510 119094546 -2749310 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1 1493 1000 109 13 13 chr11 119094548 119094706 -2749150 - B2_Mm1t SINE B2 -35 158 1 1 1493 513 0 0 0 chr11 119094804 119094861 -2748995 + (TTGG)n Simple_repeat Simple_repeat 3 59 0 1 1493 548 204 170 55 chr11 119095057 119095239 -2748617 - RMER15 LTR ERVL -15 560 358 1 1493 276 120 0 0 chr11 119095297 119095347 -2748509 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1 1493 290 305 9 54 chr11 119095574 119095685 -2748171 + PB1D10 SINE Alu 1 106 -11 1 1493 1110 102 18 0 chr11 119096164 119096330 -2747526 + B2_Mm2 SINE B2 1 169 -26 1 1493 216 256 11 79 chr11 119096475 119096564 -2747292 + PB1D7 SINE Alu 16 98 -22 1 1493 758 205 25 13 chr11 119096953 119097111 -2746745 + B3A SINE B2 1 160 -38 1 1493 363 321 37 0 chr11 119097121 119097230 -2746626 - B3A SINE B2 -38 160 48 1 1493 1378 152 8 38 chr11 119097786 119098053 -2745803 - MTC LTR MaLR -151 270 12 1 1493 285 117 78 0 chr11 119098079 119098182 -2745674 + T-rich Low_complexity Low_complexity 2 112 0 1 1493 1185 186 50 63 chr11 119098643 119098942 -2744914 + Lx5 LINE L1 6756 7050 0 1 1493 450 36 0 0 chr11 119099025 119099081 -2744775 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1493 273 57 0 0 chr11 119099589 119099624 -2744232 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1493 584 280 72 26 chr11 119100189 119100383 -2743473 - ID_B1 SINE B4 0 224 22 1 1493 358 147 351 18 chr11 119102107 119102218 -2741638 - B2_Mm2 SINE B2 -1 194 47 1 1493 1286 97 11 0 chr11 119102269 119102444 -2741412 - B2_Mm1t SINE B2 -14 179 3 2 1493 355 60 0 0 chr11 119102476 119102526 -2741330 + B1_Mur4 SINE Alu 2 51 -99 2 1493 903 82 0 50 chr11 119102517 119102658 -2741198 - B1_Mus2 SINE Alu -12 135 2 2 1493 529 228 47 0 chr11 119102548 119102675 -2741181 - B4 SINE B4 -90 202 70 2 1493 335 307 190 0 chr11 119102843 119102994 -2740862 + B4A SINE B4 51 232 -60 2 1493 755 216 64 12 chr11 119102994 119103149 -2740707 + B3 SINE B2 1 165 -51 2 1493 513 0 0 0 chr11 119103149 119103206 -2740650 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1493 755 216 64 12 chr11 119103206 119103223 -2740633 + B3 SINE B2 166 182 -34 2 1493 339 242 51 31 chr11 119103379 119103477 -2740379 + PB1D10 SINE Alu 18 117 0 2 1493 378 254 34 34 chr11 119103494 119103612 -2740244 + B1_Mur2 SINE Alu 5 122 -27 2 1493 799 261 0 42 chr11 119104947 119105139 -2738717 + B3A SINE B2 4 187 -11 2 1493 405 141 0 0 chr11 119105142 119105227 -2738629 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1493 279 79 0 0 chr11 119105596 119105634 -2738222 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 1493 210 37 0 0 chr11 119105645 119105672 -2738184 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1493 666 37 0 0 chr11 119105694 119105775 -2738081 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 2 1493 308 244 0 65 chr11 119105992 119106084 -2737772 + B4A SINE B4 9 94 -198 2 1493 828 163 7 54 chr11 119106091 119106240 -2737616 - B1_Mur3 SINE Alu -7 142 1 2 1493 1026 208 25 15 chr11 119106265 119106465 -2737391 - B3 SINE B2 -11 205 4 2 1493 465 19 0 0 chr11 119106473 119106527 -2737329 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1493 752 251 98 21 chr11 119106542 119106778 -2737078 + MTD LTR MaLR 164 417 -2 2 1493 1492 27 54 0 chr11 119106821 119107005 -2736851 + B2_Mm2 SINE B2 2 195 0 2 1493 218 213 0 0 chr11 119107787 119107834 -2736022 + T-rich Low_complexity Low_complexity 1 47 0 2 1493 642 183 7 51 chr11 119107834 119107972 -2735884 - B1_Mur3 SINE Alu 0 149 18 2 1493 416 295 34 149 chr11 119107972 119108069 -2735787 - ID_B1 SINE B4 0 224 17 2 1493 243 250 0 0 chr11 119108095 119108147 -2735709 - ID_B1 SINE B4 -3 221 170 2 1493 459 0 0 0 chr11 119108150 119108201 -2735655 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1493 391 233 8 104 chr11 119108286 119108420 -2735436 - B1F SINE Alu -5 144 24 2 1493 211 184 0 0 chr11 119108494 119108532 -2735324 + G-rich Low_complexity Low_complexity 1 38 0 2 1493 180 152 0 0 chr11 119108622 119108655 -2735201 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1493 304 146 0 18 chr11 119108793 119108849 -2735007 - B2_Mm2 SINE B2 -94 101 47 2 1493 1395 73 11 0 chr11 119108896 119109073 -2734783 - B2_Mm1t SINE B2 -14 179 1 2 1493 183 100 0 0 chr11 119109084 119109114 -2734742 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2 1493 421 294 42 0 chr11 119109114 119109257 -2734599 - B1F SINE Alu 0 149 1 2 1493 350 129 177 32 chr11 119109518 119109632 -2734224 - B2_Mm2 SINE B2 0 193 47 2 1493 1079 99 13 6 chr11 119109679 119109865 -2733991 - B2_Mm1t SINE B2 -14 181 1 2 1493 374 174 76 65 chr11 119110889 119110981 -2732875 + PB1D9 SINE Alu 23 115 -5 2 1493 297 0 0 0 chr11 119110981 119111014 -2732842 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1493 955 45 7 29 chr11 119111018 119111155 -2732701 + B1_Mus1 SINE Alu 10 143 -5 2 1493 251 177 16 0 chr11 119111404 119111466 -2732390 + C-rich Low_complexity Low_complexity 4 66 0 2 1493 598 198 0 0 chr11 119111481 119111587 -2732269 - B1F2 SINE Alu -26 123 18 2 1493 670 125 18 0 chr11 119111588 119111700 -2732156 + B1_Mus2 SINE Alu 33 146 -1 2 1493 1311 115 0 25 chr11 119111702 119111899 -2731957 + B2_Mm2 SINE B2 1 192 -3 2 1493 614 312 82 19 chr11 119112653 119112921 -2730935 + B4A SINE B4 8 292 0 2 1493 534 204 0 0 chr11 119112926 119113039 -2730817 + (TA)n Simple_repeat Simple_repeat 1 113 0 2 1493 358 188 159 34 chr11 119113414 119113502 -2730354 + PB1D10 SINE Alu 18 116 -1 2 1493 500 0 17 0 chr11 119114385 119114445 -2729411 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1493 414 189 33 22 chr11 119115342 119115434 -2728422 + B4A SINE B4 5 97 -195 2 1493 260 304 65 22 chr11 119115434 119115480 -2728376 + B3A SINE B2 5 148 -50 2 1493 290 294 43 21 chr11 119115463 119115557 -2728299 + B4A SINE B4 187 282 -10 2 1493 399 232 42 29 chr11 119116146 119116253 -2727603 + B1_Mur1 SINE Alu 6 143 -6 2 1493 1131 229 5 0 chr11 119116383 119116593 -2727263 + B3 SINE B2 3 213 -3 2 1493 194 0 39 0 chr11 119116602 119116628 -2727228 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1493 1338 54 52 42 chr11 119116637 119116829 -2727027 + B2_Mm2 SINE B2 2 195 0 2 1493 882 256 62 115 chr11 119117023 119117407 -2726449 + MTE2b LTR MaLR 16 379 0 2 1493 287 252 134 34 chr11 119117446 119117565 -2726291 + B1F SINE Alu 19 149 0 2 1493 243 330 43 32 chr11 119117577 119117671 -2726185 + ID_B1 SINE B4 50 144 -80 2 1493 353 236 45 68 chr11 119117723 119117855 -2726001 - RLTR13D3 LTR ERVK -42 1072 944 2 1493 220 158 0 0 chr11 119118104 119118142 -2725714 - B2_Mm2 SINE B2 -157 38 1 2 1493 365 204 75 0 chr11 119118623 119118716 -2725140 + ID_B1 SINE B4 122 221 -3 2 1493 373 112 326 0 chr11 119119193 119119282 -2724574 + B1_Mur2 SINE Alu 32 149 0 2 1493 594 188 138 133 chr11 119119291 119119487 -2724369 - B3A SINE B2 0 198 2 2 1493 353 275 138 48 chr11 119119985 119120130 -2723726 - MLT2B2 LTR ERVL -353 162 5 2 1493 874 274 60 78 chr11 119120365 119120646 -2723210 - B4 SINE B4 -1 291 16 2 1493 208 321 83 15 chr11 119122327 119122460 -2721396 + MIR3 SINE MIR 1 142 -66 2 1493 371 295 45 0 chr11 119122514 119122626 -2721230 + PB1D7 SINE Alu 1 117 -3 2 1493 2458 90 16 3 chr11 119123558 119123881 -2719975 + ORR1A2 LTR MaLR 1 327 0 2 1493 1291 221 71 20 chr11 119123918 119124268 -2719588 + ORR1D2 LTR MaLR 3 370 0 2 1493 1116 23 0 0 chr11 119125075 119125206 -2718650 + (CA)n Simple_repeat Simple_repeat 1 131 0 2 1493 1082 67 0 0 chr11 119125250 119125385 -2718471 + B1_Mus1 SINE Alu 1 135 -13 2 1493 276 30 0 0 chr11 119125385 119125418 -2718438 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1493 1221 35 0 0 chr11 119126603 119126746 -2717110 + B1_Mus2 SINE Alu 5 147 0 2 1493 1118 56 35 0 chr11 119126767 119126909 -2716947 + B1_Mus1 SINE Alu 1 147 -1 2 1493 186 103 0 0 chr11 119126933 119126962 -2716894 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1493 1213 61 0 0 chr11 119126962 119127109 -2716747 - B1_Mus1 SINE Alu 0 148 2 2 1493 300 27 0 0 chr11 119127179 119127216 -2716640 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1493 1076 122 93 0 chr11 119127320 119127492 -2716364 + B2_Mm2 SINE B2 5 192 -3 2 1493 675 84 0 0 chr11 119127502 119127597 -2716259 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 2 1493 247 224 35 0 chr11 119127900 119127958 -2715898 - RLTR28B LTR ERVL -3 478 419 2 1493 657 173 29 29 chr11 119128021 119128158 -2715698 - B1_Mus1 SINE Alu -11 137 1 2 1493 844 68 16 33 chr11 119128188 119128309 -2715547 + PB1D9 SINE Alu 2 120 0 2 1493 1669 155 10 13 chr11 119128325 119128540 -2715316 - RLTR28B LTR ERVL -181 300 86 2 1493 207 0 0 0 chr11 119128540 119128563 -2715293 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1493 1669 155 10 13 chr11 119128563 119128648 -2715208 - RLTR28B LTR ERVL -396 85 1 2 1493 246 168 40 0 chr11 119128861 119128923 -2714933 - ID4 SINE ID -7 76 9 2 1493 416 291 0 9 chr11 119128939 119129050 -2714806 - PB1D10 SINE Alu -7 110 1 2 1493 361 272 109 34 chr11 119130143 119130318 -2713538 + MER21B LTR ERV1 134 321 -542 2 1493 425 261 80 0 chr11 119130296 119130434 -2713422 + ID_B1 SINE B4 66 214 -10 2 1493 563 274 58 67 chr11 119130506 119130729 -2713127 + MER21B LTR ERV1 408 628 -235 2 1493 818 168 20 40 chr11 119132301 119132450 -2711406 + B1_Mus1 SINE Alu 2 147 -1 2 1493 262 266 65 134 chr11 119132450 119132567 -2711289 + ID_B1 SINE B4 16 217 -7 2 1493 360 224 40 20 chr11 119132567 119132667 -2711189 + PB1D7 SINE Alu 12 113 -7 2 1493 1346 230 76 13 chr11 119132962 119133416 -2710440 - RMER4B LTR ERVK -9 576 55 2 1493 1175 130 17 11 chr11 119133418 119133597 -2710259 + B2_Mm1t SINE B2 2 181 -12 2 1493 255 235 0 0 chr11 119133665 119133716 -2710140 + B2_Mm2 SINE B2 51 101 -94 2 1493 25 0 0 0 chr11 119133738 119133763 -2710093 + AT_rich Low_complexity Low_complexity 1 25 0 2 1493 1156 95 0 0 chr11 119133771 119133918 -2709938 + B1_Mus2 SINE Alu 1 147 0 2 1493 1025 131 67 22 chr11 119133950 119134129 -2709727 - B2_Mm2 SINE B2 -7 188 2 2 1493 862 228 171 8 chr11 119134443 119134677 -2709179 - MTD LTR MaLR -14 405 134 2 1493 601 201 35 35 chr11 119134727 119134871 -2708985 - MTD LTR MaLR -253 166 23 2 1493 231 36 0 0 chr11 119136929 119136957 -2706899 + (CCA)n Simple_repeat Simple_repeat 3 30 0 2 1493 318 327 9 9 chr11 119137050 119137158 -2706698 - PB1D10 SINE Alu -5 112 5 2 1493 639 197 43 50 chr11 119137167 119137306 -2706550 - B1_Mur1 SINE Alu -9 140 3 2 1493 425 290 103 0 chr11 119137342 119137497 -2706359 + B3A SINE B2 1 171 -27 2 1493 258 56 0 0 chr11 119137498 119137534 -2706322 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1493 936 162 23 11 chr11 119137559 119137580 -2706276 - B2_Mm1t SINE B2 -13 180 160 2 1493 198 0 0 0 chr11 119137580 119137602 -2706254 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1493 1066 67 0 20 chr11 119137602 119137755 -2706101 - B2_Mm2 SINE B2 -42 153 4 3 1493 688 187 7 36 chr11 119137762 119137901 -2705955 + B1_Mur4 SINE Alu 16 150 0 3 1493 198 0 0 0 chr11 119138287 119138309 -2705547 + (TGG)n Simple_repeat Simple_repeat 3 24 0 3 1493 833 149 0 103 chr11 119140646 119140811 -2703045 - B1_Mus1 SINE Alu 0 148 1 3 1493 783 203 217 52 chr11 119142071 119142398 -2701458 - MTD LTR MaLR -35 384 4 3 1493 382 284 94 45 chr11 119143060 119143251 -2700605 + B4 SINE B4 2 218 -6 3 1493 411 269 167 17 chr11 119143262 119143436 -2700420 + B4 SINE B4 85 284 -8 3 1494 181 259 96 44 chr11 119144717 119144828 -2699028 - MIRb SINE MIR -115 153 32 3 1494 1138 69 14 0 chr11 119146875 119147020 -2696836 - B1_Mus2 SINE Alu 0 147 1 3 1494 256 281 227 7 chr11 119148497 119148651 -2695205 - 7SK RNA RNA -95 236 49 3 1494 958 47 139 0 chr11 119148842 119148971 -2694885 - B1_Mm SINE Alu 0 147 1 3 1494 359 307 38 50 chr11 119149016 119149212 -2694644 - MLT1E2 LTR MaLR -5 622 371 3 1494 225 0 0 0 chr11 119150853 119150878 -2692978 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1494 1699 16 11 0 chr11 119151388 119151578 -2692278 + B2_Mm1a SINE B2 2 193 0 3 1494 699 191 28 56 chr11 119151776 119151920 -2691936 + B1_Mm SINE Alu 1 140 -7 3 1494 549 43 0 0 chr11 119151928 119151998 -2691858 + B2_Mm2 SINE B2 2 71 -124 3 1494 2836 59 78 3 chr11 119151998 119152370 -2691486 + MTB LTR MaLR 1 400 0 3 1494 4646 158 86 41 chr11 119152370 119153275 -2690581 + MTB-int LTR MaLR 3 932 -326 3 1494 1179 75 0 0 chr11 119153275 119153422 -2690434 - B1_Mus2 SINE Alu 0 147 1 3 1494 4646 158 86 41 chr11 119153422 119153523 -2690333 + MTB-int LTR MaLR 933 1055 -203 3 1494 512 316 14 0 chr11 119153527 119153666 -2690190 + RSINE1 SINE B4 25 165 0 3 1494 252 0 0 0 chr11 119153815 119153843 -2690013 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1494 979 69 99 0 chr11 119154403 119154534 -2689322 + B1_Mm SINE Alu 1 144 -3 3 1494 241 254 15 0 chr11 119157206 119157273 -2686583 - B1_Mus2 SINE Alu -13 134 67 3 1494 263 204 0 0 chr11 119157240 119157289 -2686567 - B1F SINE Alu -19 130 82 3 1494 557 295 102 69 chr11 119157604 119158067 -2685789 + RLTR12B LTR ERVK 17 494 -34 3 1494 191 36 0 35 chr11 119158184 119158213 -2685643 + (TTTTTA)n Simple_repeat Simple_repeat 4 31 0 3 1494 240 297 76 59 chr11 119158518 119158636 -2685220 + MT2B LTR ERVL 131 250 -351 3 1494 491 118 223 18 chr11 119158567 119158679 -2685177 + B1_Mus2 SINE Alu 13 147 0 3 1494 1274 126 11 0 chr11 119158702 119158892 -2684964 + B2_Mm1t SINE B2 2 193 0 3 1494 184 140 0 57 chr11 119159005 119159058 -2684798 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 3 1494 282 237 0 0 chr11 119159351 119159410 -2684446 + ID_B1 SINE B4 112 170 -54 3 1494 274 253 34 57 chr11 119159410 119159439 -2684417 + PB1D10 SINE Alu 31 116 -1 3 1494 317 252 64 36 chr11 119159624 119159640 -2684216 + ID_B1 SINE B4 80 223 -1 3 1494 629 130 81 8 chr11 119159640 119159764 -2684092 + B1_Mur4 SINE Alu 16 148 -2 3 1494 379 126 290 50 chr11 119159870 119159970 -2683886 - B1_Mus1 SINE Alu -6 142 19 3 1494 330 156 62 0 chr11 119160046 119160110 -2683746 + MT2A LTR ERVL 1 68 -465 3 1494 286 127 87 87 chr11 119160137 119160190 -2683666 + B1_Mm SINE Alu 79 135 -12 3 1494 180 0 0 0 chr11 119160190 119160210 -2683646 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1494 796 146 51 0 chr11 119160211 119160348 -2683508 + B1_Mus2 SINE Alu 3 146 -1 3 1494 286 127 87 87 chr11 119160348 119160361 -2683495 + B1_Mm SINE Alu 136 147 0 3 1494 216 0 0 0 chr11 119160445 119160469 -2683387 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1494 285 357 41 14 chr11 119160514 119160659 -2683197 + L2 LINE L2 2745 2893 -526 3 1494 519 281 42 6 chr11 119161996 119162164 -2681692 + B3A SINE B2 7 180 -18 3 1494 279 0 0 0 chr11 119162270 119162301 -2681555 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1494 267 267 148 81 chr11 119162442 119162678 -2681178 + MER33 DNA MER1_type 23 274 -50 3 1494 243 264 25 62 chr11 119163065 119163184 -2680672 + ID_B1 SINE B4 71 179 -113 3 1494 315 274 18 28 chr11 119163098 119163207 -2680649 + PB1D10 SINE Alu 9 116 -1 3 1494 609 215 118 19 chr11 119163216 119163377 -2680479 + B3 SINE B2 2 178 -38 3 1494 180 0 0 0 chr11 119163438 119163458 -2680398 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1494 765 177 15 37 chr11 119163458 119163593 -2680263 - B1_Mus2 SINE Alu -13 134 3 3 1494 391 226 0 12 chr11 119165510 119165595 -2678261 + PB1D10 SINE Alu 2 85 -32 3 1494 466 273 26 53 chr11 119165637 119165788 -2678068 + B1F1 SINE Alu 3 149 0 3 1494 322 256 48 12 chr11 119166695 119166778 -2677078 - B1F2 SINE Alu -60 89 4 3 1494 665 106 88 0 chr11 119166824 119166937 -2676919 - B2_Mm2 SINE B2 -70 125 3 3 1494 3792 104 205 80 chr11 119167357 119168162 -2675694 - RMER17A2 LTR ERVK 0 906 1 3 1494 283 280 165 64 chr11 119168171 119168499 -2675357 - L2a LINE L2 -49 3326 2966 3 1494 363 194 0 0 chr11 119169657 119169750 -2674106 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1494 192 298 0 0 chr11 119169796 119169927 -2673929 + (TG)n Simple_repeat Simple_repeat 2 132 0 3 1494 836 20 0 10 chr11 119169953 119170056 -2673800 + (GGGAGA)n Simple_repeat Simple_repeat 3 104 0 3 1494 887 124 6 0 chr11 119170391 119170568 -2673288 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 1494 312 152 51 0 chr11 119170578 119170637 -2673219 - HAL1-3A_ME LINE L1 -821 2037 1976 3 1494 378 114 0 0 chr11 119170662 119170732 -2673124 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1494 246 116 0 0 chr11 119170791 119170834 -2673022 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1494 369 0 0 0 chr11 119170906 119170947 -2672909 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1494 533 250 22 22 chr11 119171042 119171177 -2672679 - ID_B1 SINE B4 0 224 90 3 1494 3564 91 41 12 chr11 119172275 119172786 -2671070 - L1_Mus3 LINE L1 -1 6637 6112 3 1494 2232 124 2 112 chr11 119172796 119173071 -2670785 - L1_Mm LINE L1 -524 5359 5122 3 1494 195 42 0 0 chr11 119173071 119173095 -2670761 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 3 1494 1089 45 8 0 chr11 119173095 119173227 -2670629 - B1_Mus1 SINE Alu -14 134 2 3 1494 2232 124 2 112 chr11 119173227 119173404 -2670452 - L1_Mm LINE L1 -762 5121 4957 3 1494 393 115 25 13 chr11 119173802 119173881 -2669975 + C-rich Low_complexity Low_complexity 6 85 0 3 1494 456 19 0 0 chr11 119173894 119173947 -2669909 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 3 1494 1381 64 35 0 chr11 119173947 119174119 -2669737 - B2_Mm2 SINE B2 -17 178 1 3 1494 769 159 14 55 chr11 119174131 119174277 -2669579 - B1_Mus2 SINE Alu -7 140 1 3 1494 324 0 0 0 chr11 119174279 119174315 -2669541 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1494 270 0 0 0 chr11 119174588 119174618 -2669238 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 3 1494 696 164 16 8 chr11 119174632 119174755 -2669101 - B3 SINE B2 -89 127 4 3 1494 403 215 0 0 chr11 119174793 119174872 -2668984 - ID_B1 SINE B4 -7 217 139 3 1494 290 321 119 0 chr11 119174872 119174902 -2668954 - B1_Mur1 SINE Alu -7 142 21 3 1494 576 221 39 0 chr11 119174894 119175019 -2668837 - B1_Mur4 SINE Alu -9 141 1 3 1494 884 174 28 7 chr11 119175063 119175208 -2668648 - B1_Mur1 SINE Alu -1 148 1 3 1494 462 309 333 20 chr11 119176256 119176487 -2667369 - MTEa LTR MaLR -76 303 1 3 1494 1215 89 0 0 chr11 119177190 119178030 -2665826 + (TG)n Simple_repeat Simple_repeat 1 840 0 3 1494 383 295 10 10 chr11 119178753 119178849 -2665007 + PB1D7 SINE Alu 11 106 -14 3 1494 330 336 67 0 chr11 119178854 119178973 -2664883 + ID_B1 SINE B4 1 127 -97 3 1494 519 248 22 22 chr11 119179173 119179309 -2664547 + ID_B1 SINE B4 81 216 -8 3 1494 280 183 33 16 chr11 119179431 119179492 -2664364 + tRNA-Ala-GCY_ tRNA tRNA 2 63 -12 3 1494 275 241 51 0 chr11 119179492 119179503 -2664353 + ID2 SINE ID 28 83 0 3 1494 26 0 0 0 chr11 119179756 119179782 -2664074 + AT_rich Low_complexity Low_complexity 1 26 0 3 1494 586 309 12 0 chr11 119179810 119179972 -2663884 - ID_B1 SINE B4 -60 164 1 3 1494 279 311 41 25 chr11 119179972 119180053 -2663803 - MLT1D LTR MaLR -368 137 52 3 1494 1653 208 130 0 chr11 119180053 119180423 -2663433 - MTD LTR MaLR 0 419 2 3 1494 279 311 41 25 chr11 119180423 119180461 -2663395 - MLT1D LTR MaLR -454 51 16 3 1494 713 194 0 6 chr11 119180663 119180829 -2663027 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 1494 402 149 0 0 chr11 119180854 119180941 -2662915 + (GA)n Simple_repeat Simple_repeat 1 87 0 3 1494 3524 25 2 0 chr11 119180955 119181350 -2662506 - MTA_Mm LTR MaLR 0 396 1 3 1494 9554 16 19 1 chr11 119181350 119182428 -2661428 - MTA_Mm-int LTR MaLR 0 1098 1 3 1494 3524 25 2 0 chr11 119182428 119182823 -2661033 - MTA_Mm LTR MaLR 0 396 1 3 1494 456 104 0 0 chr11 119183067 119183134 -2660722 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1494 1228 263 44 17 chr11 119184707 119185067 -2658789 - ORR1D2 LTR MaLR 0 370 1 3 1494 464 264 122 75 chr11 119185067 119185254 -2658602 + B3A SINE B2 21 216 0 3 1494 295 208 69 0 chr11 119185747 119185819 -2658037 - MT2B2 LTR ERVL -333 251 175 3 1494 270 227 147 0 chr11 119185754 119185829 -2658027 - PB1D10 SINE Alu -31 86 1 3 1494 225 0 0 0 chr11 119186056 119186081 -2657775 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1494 650 133 0 0 chr11 119186301 119186399 -2657457 - B1_Mus2 SINE Alu -9 138 41 3 1494 21 0 0 0 chr11 119186422 119186443 -2657413 + AT_rich Low_complexity Low_complexity 1 21 0 3 1494 905 219 47 5 chr11 119186453 119186646 -2657210 + B3 SINE B2 4 204 -12 3 1494 354 315 18 9 chr11 119188742 119188851 -2655005 - PB1D10 SINE Alu -7 110 1 4 1494 353 117 17 0 chr11 119188865 119188925 -2654931 + (CATA)n Simple_repeat Simple_repeat 2 62 0 4 1494 667 232 31 37 chr11 119188925 119189086 -2654770 + RSINE1 SINE B4 6 165 0 4 1494 858 159 169 6 chr11 119189247 119189430 -2654426 - B3 SINE B2 0 216 4 4 1494 379 329 128 0 chr11 119190066 119190230 -2653626 - MLT1C LTR MaLR -77 390 206 4 1494 608 140 422 25 chr11 119190241 119190402 -2653454 - URR1B DNA MER1_type 0 225 1 4 1494 299 193 34 7 chr11 119190554 119190700 -2653156 + (CAGA)n Simple_repeat Simple_repeat 3 152 0 4 1494 600 176 35 0 chr11 119190905 119191075 -2652781 + GA-rich Low_complexity Low_complexity 1 176 0 4 1494 344 73 36 0 chr11 119191189 119191244 -2652612 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 4 1494 360 321 42 14 chr11 119191412 119191554 -2652302 - MLT1C LTR MaLR -316 151 6 4 1494 723 337 44 11 chr11 119193769 119194027 -2649829 + B4A SINE B4 1 269 -23 4 1494 270 0 0 0 chr11 119194027 119194057 -2649799 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1494 723 337 44 11 chr11 119194057 119194071 -2649785 + B4A SINE B4 270 282 -10 4 1494 327 106 46 23 chr11 119194084 119194171 -2649685 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 4 1494 225 244 293 0 chr11 119194180 119194262 -2649594 + PB1D10 SINE Alu 3 108 -9 4 1494 941 189 94 25 chr11 119194379 119194580 -2649276 - B3 SINE B2 0 216 2 4 1494 261 0 0 0 chr11 119195592 119195621 -2648235 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1494 243 0 0 0 chr11 119195621 119195647 -2648209 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 1494 453 282 9 0 chr11 119196066 119196176 -2647680 + PB1D9 SINE Alu 1 111 -9 4 1494 417 288 73 29 chr11 119196198 119196334 -2647522 - RSINE1 SINE B4 -10 155 14 4 1494 708 224 0 0 chr11 119196342 119196512 -2647344 + CT-rich Low_complexity Low_complexity 3 172 0 4 1494 255 31 0 0 chr11 119196539 119196571 -2647285 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1494 827 28 0 0 chr11 119196583 119196690 -2647166 - B1_Mus1 SINE Alu -40 108 2 4 1494 298 231 37 7 chr11 119196690 119196718 -2647138 - ORR1B1-int LTR MaLR -755 754 616 4 1494 969 149 7 7 chr11 119196719 119196868 -2646988 - B1_Mur3 SINE Alu 0 149 1 4 1494 732 228 143 0 chr11 119197110 119197299 -2646557 - B3 SINE B2 0 216 1 4 1494 772 221 11 23 chr11 119197299 119197475 -2646381 - B3A SINE B2 -2 196 23 4 1494 238 53 0 0 chr11 119198202 119198240 -2645616 - RMER4A LTR ERVK 0 466 429 4 1494 2833 123 63 9 chr11 119198304 119198397 -2645459 - RMER4A LTR ERVK 0 466 374 4 1494 750 78 0 0 chr11 119198397 119198499 -2645357 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1494 2833 123 63 9 chr11 119198499 119198847 -2645009 - RMER4A LTR ERVK -93 373 2 4 1494 1185 57 0 0 chr11 119199385 119199526 -2644330 - B1_Mus1 SINE Alu -6 142 2 4 1494 748 250 43 24 chr11 119201105 119201314 -2642542 - B3 SINE B2 0 216 4 4 1494 766 255 53 5 chr11 119201684 119201844 -2642012 + B3A SINE B2 1 166 -32 4 1494 243 0 0 0 chr11 119201844 119201871 -2641985 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1494 766 255 53 5 chr11 119201871 119201899 -2641957 + B3A SINE B2 167 198 0 4 1494 289 159 304 0 chr11 119202962 119203031 -2640825 - B1_Mus2 SINE Alu -1 146 57 4 1494 1573 37 21 5 chr11 119203061 119203249 -2640607 + B2_Mm1a SINE B2 2 192 -1 4 1494 296 276 47 19 chr11 119204001 119204108 -2639748 - MER20 DNA MER1_type -6 213 104 4 1494 338 130 0 0 chr11 119204851 119204905 -2638951 + HAL1-3A_ME LINE L1 1959 2012 -846 4 1494 214 125 42 0 chr11 119206934 119206982 -2636874 + GA-rich Low_complexity Low_complexity 2 51 0 4 1494 471 118 0 0 chr11 119208925 119209001 -2634855 + (CAGA)n Simple_repeat Simple_repeat 2 77 0 4 1494 420 188 25 0 chr11 119209509 119209599 -2634257 + B1F SINE Alu 58 149 0 4 1494 660 308 30 11 chr11 119209624 119209887 -2633969 + B4A SINE B4 19 286 -6 4 1494 287 379 0 0 chr11 119209891 119210015 -2633841 + (CA)n Simple_repeat Simple_repeat 1 124 0 4 1494 1197 185 24 5 chr11 119210056 119210268 -2633588 + B3 SINE B2 1 216 0 4 1494 770 106 0 9 chr11 119210284 119210398 -2633458 + B1_Mur4 SINE Alu 33 145 -5 4 1494 1113 126 0 17 chr11 119210403 119210581 -2633275 + B2_Mm2 SINE B2 1 175 -20 4 1494 52 0 0 0 chr11 119210581 119210633 -2633223 + AT_rich Low_complexity Low_complexity 1 52 0 4 1494 478 264 56 14 chr11 119212560 119212702 -2631154 + RSINE1 SINE B4 2 149 -16 4 1494 1127 91 0 0 chr11 119212749 119212892 -2630964 + B1_Mus1 SINE Alu 1 143 -5 4 1494 210 37 0 0 chr11 119212896 119212923 -2630933 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1494 1443 80 11 0 chr11 119212951 119213138 -2630718 + B2_Mm1t SINE B2 2 190 -3 4 1494 714 112 43 0 chr11 119213156 119213272 -2630584 - B1_Mur2 SINE Alu -10 139 19 4 1494 469 280 131 23 chr11 119213344 119213604 -2630252 + L1MB2 LINE L1 5884 6171 0 4 1494 267 31 0 0 chr11 119214575 119214607 -2629249 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1494 359 308 8 8 chr11 119214898 119215032 -2628824 + (CAGG)n Simple_repeat Simple_repeat 3 136 0 4 1494 521 354 0 0 chr11 119215076 119215488 -2628368 + (CAGG)n Simple_repeat Simple_repeat 1 412 0 4 1494 622 146 0 0 chr11 119215900 119216003 -2627853 - B3 SINE B2 -112 104 2 4 1494 525 16 0 0 chr11 119217309 119217371 -2626485 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1494 497 228 0 66 chr11 119218585 119218707 -2625149 + PB1D10 SINE Alu 1 114 -3 4 1494 903 72 0 0 chr11 119218722 119218847 -2625009 + B1_Mus1 SINE Alu 24 148 0 4 1494 725 239 36 68 chr11 119218858 119219078 -2624778 + B3 SINE B2 3 215 -1 4 1494 260 174 0 0 chr11 119219700 119219746 -2624110 - ORR1A3 LTR MaLR 0 367 322 4 1494 1179 76 0 0 chr11 119219750 119219894 -2623962 + B1_Mus1 SINE Alu 4 147 -1 4 1494 287 78 20 0 chr11 119219894 119219945 -2623911 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1494 1755 152 7 10 chr11 119219948 119220247 -2623609 - ORR1A3 LTR MaLR -28 298 1 4 1494 451 258 36 112 chr11 119220247 119220469 -2623387 + B3 SINE B2 12 216 0 4 1494 1461 65 88 0 chr11 119220827 119221043 -2622813 - ORR1A2 LTR MaLR 0 327 93 4 1494 313 121 316 9 chr11 119221041 119221155 -2622701 - B2_Mm2 SINE B2 0 195 47 4 1494 946 115 160 0 chr11 119221187 119221343 -2622513 - B2_Mm2 SINE B2 -14 181 1 4 1494 782 56 0 0 chr11 119221343 119221450 -2622406 - ORR1A2 LTR MaLR -220 107 1 4 1494 1142 81 0 13 chr11 119221750 119221900 -2621956 + B1_Mus1 SINE Alu 1 148 0 4 1494 1248 41 0 0 chr11 119221933 119222079 -2621777 + B1_Mus2 SINE Alu 2 147 0 4 1494 236 100 25 0 chr11 119222390 119222430 -2621426 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 4 1494 252 0 0 0 chr11 119222542 119222570 -2621286 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1494 183 114 0 0 chr11 119222791 119222826 -2621030 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1494 1502 78 0 25 chr11 119222840 119223038 -2620818 + B2_Mm2 SINE B2 3 195 0 4 1494 319 276 103 0 chr11 119224460 119224547 -2619309 + PB1D10 SINE Alu 21 116 -1 4 1494 283 241 23 35 chr11 119224585 119224671 -2619185 + C-rich Low_complexity Low_complexity 4 88 0 4 1494 605 195 222 11 chr11 119225186 119225362 -2618494 - B3 SINE B2 -2 214 2 4 1494 595 209 256 21 chr11 119225435 119225626 -2618230 - Lx8 LINE L1 -111 7362 7127 4 1494 644 79 0 0 chr11 119225626 119225715 -2618141 + B1_Mus2 SINE Alu 58 146 -1 4 1494 718 197 0 0 chr11 119225797 119225929 -2617927 - RSINE1 SINE B4 -31 134 3 4 1494 2590 139 110 19 chr11 119226178 119226660 -2617196 - RLTR11A LTR ERVK 0 528 3 4 1494 3387 221 70 90 chr11 119226674 119226792 -2617064 - MYSERV16_I-int LTR ERVK -8 6542 6453 4 1494 1236 54 0 0 chr11 119226792 119226939 -2616917 + B1_Mm SINE Alu 1 147 0 4 1494 3387 221 70 90 chr11 119226939 119227095 -2616761 - MYSERV16_I-int LTR ERVK -98 6452 6302 4 1494 1251 48 0 0 chr11 119227095 119227240 -2616616 + B1_Mm SINE Alu 2 146 -1 4 1494 4403 195 24 51 chr11 119227240 119227769 -2616087 - MYSERV16_I-int LTR ERVK -266 2060 1574 4 1494 1253 91 91 0 chr11 119227769 119227945 -2615911 - B2_Mm2 SINE B2 -3 192 1 4 1494 4403 193 21 48 chr11 119227945 119227961 -2615895 - MYSERV16_I-int LTR ERVK -753 1573 1573 4 1494 1608 52 0 10 chr11 119227961 119228155 -2615701 - B2_Mm1a SINE B2 0 193 2 4 1494 4403 193 21 48 chr11 119228155 119228696 -2615160 - MYSERV16_I-int LTR ERVK -753 1573 1034 4 1494 1964 100 116 10 chr11 119228884 119229176 -2614680 + ORR1A2 LTR MaLR 2 324 -3 4 1494 1262 20 7 0 chr11 119229535 119229681 -2614175 + B1_Mus1 SINE Alu 2 148 0 4 1494 793 214 74 50 chr11 119229708 119229910 -2613946 + B3 SINE B2 2 208 -8 4 1494 396 59 0 0 chr11 119230681 119230732 -2613124 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1494 360 193 298 0 chr11 119231251 119231365 -2612491 - B1_Mur2 SINE Alu -1 148 1 4 1494 314 293 12 0 chr11 119231850 119231932 -2611924 + B1_Mur3 SINE Alu 2 84 -65 4 1494 584 275 41 41 chr11 119232539 119232582 -2611274 - B3A SINE B2 0 198 158 4 1494 216 0 0 0 chr11 119232582 119232606 -2611250 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1494 584 275 41 41 chr11 119232606 119232759 -2611097 - B3A SINE B2 -41 157 3 4 1494 358 172 161 0 chr11 119233401 119233488 -2610368 + Lx8 LINE L1 7173 7273 -200 4 1494 1206 62 0 0 chr11 119233920 119234066 -2609790 + B1_Mus2 SINE Alu 1 146 -1 4 1494 975 115 7 33 chr11 119234103 119234256 -2609600 + B1_Mur4 SINE Alu 2 150 0 4 1494 1155 101 0 0 chr11 119234582 119234750 -2609106 + (TCC)n Simple_repeat Simple_repeat 1 168 0 4 1494 267 327 19 37 chr11 119234900 119234944 -2608912 + B4 SINE B4 45 86 -206 4 1494 380 217 24 24 chr11 119234944 119235029 -2608827 + PB1D9 SINE Alu 2 86 -34 4 1494 319 173 25 0 chr11 119235037 119235118 -2608738 + GA-rich Low_complexity Low_complexity 2 84 0 4 1494 236 266 36 48 chr11 119235320 119235403 -2608453 + Lx8 LINE L1 7143 7224 -249 4 1494 395 282 32 16 chr11 119235430 119235556 -2608300 + Lx8 LINE L1 7213 7340 -133 4 1494 966 102 73 0 chr11 119236377 119236514 -2607342 + B1_Mus1 SINE Alu 2 148 0 5 1494 1160 103 10 0 chr11 119236514 119236718 -2607138 + (GAAA)n Simple_repeat Simple_repeat 1 205 0 5 1494 284 176 48 12 chr11 119237283 119237450 -2606406 + (CA)n Simple_repeat Simple_repeat 1 173 0 5 1494 214 157 35 24 chr11 119237469 119237554 -2606302 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1494 442 134 45 28 chr11 119237584 119237760 -2606096 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1494 386 349 0 50 chr11 119239212 119239253 -2604603 + B1F1 SINE Alu 4 44 -105 5 1494 2604 74 9 0 chr11 119239253 119239577 -2604279 - ORR1A2 LTR MaLR 0 327 1 5 1494 386 349 0 50 chr11 119239577 119239674 -2604182 + B1F1 SINE Alu 45 135 -14 5 1494 1235 42 0 0 chr11 119239684 119239828 -2604028 + B1_Mus1 SINE Alu 3 146 -2 5 1494 2317 100 19 0 chr11 119240750 119241070 -2602786 + ORR1A2 LTR MaLR 1 326 -1 5 1494 192 40 0 0 chr11 119241812 119241837 -2602019 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1494 448 333 38 71 chr11 119242403 119242502 -2601354 - B4A SINE B4 0 292 197 5 1494 1441 58 26 5 chr11 119242502 119242692 -2601164 - B2_Mm2 SINE B2 0 195 2 5 1494 448 333 38 71 chr11 119242692 119242831 -2601025 - B4A SINE B4 -96 196 63 5 1494 303 206 44 0 chr11 119242979 119243047 -2600809 - RMER15 LTR ERVL -56 519 449 5 1494 775 209 188 88 chr11 119243388 119243776 -2600080 - RMER15 LTR ERVL -148 427 1 5 1494 1091 78 43 0 chr11 119244264 119244405 -2599451 + B1_Mm SINE Alu 1 147 0 5 1494 238 274 32 0 chr11 119244508 119244570 -2599286 + ID SINE ID 19 82 -142 5 1494 521 272 4 134 chr11 119244574 119244649 -2599207 - ORR1D1 LTR MaLR 0 374 306 5 1494 1452 45 73 0 chr11 119244649 119244828 -2599028 + B2_Mm1a SINE B2 2 193 0 5 1494 521 272 4 134 chr11 119244828 119244998 -2598858 - ORR1D1 LTR MaLR -69 305 161 5 1494 538 112 153 0 chr11 119244913 119245011 -2598845 + B1_Mus1 SINE Alu 36 148 0 5 1494 1706 181 61 59 chr11 119245014 119245455 -2598401 - ORR1D1-int LTR MaLR -103 1406 965 5 1494 1356 73 11 11 chr11 119245562 119245742 -2598114 + B2_Mm2 SINE B2 2 181 -14 5 1494 231 61 0 0 chr11 119246752 119246785 -2597071 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1494 822 83 0 24 chr11 119246791 119246903 -2596953 + B1_Mus2 SINE Alu 27 138 -9 5 1494 207 0 0 0 chr11 119246903 119246926 -2596930 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 5 1494 822 83 0 24 chr11 119246926 119246937 -2596919 + B1_Mus2 SINE Alu 139 147 0 5 1494 267 147 152 51 chr11 119246933 119247012 -2596844 + RMER4B LTR ERVK 33 119 -466 5 1494 1064 172 141 95 chr11 119247024 119247042 -2596814 + RMER4B LTR ERVK 184 200 -385 5 1494 1521 53 11 0 chr11 119247042 119247230 -2596626 - B2_Mm1t SINE B2 -2 191 2 5 1494 1064 172 141 95 chr11 119247230 119247467 -2596389 + RMER4B LTR ERVK 201 458 -127 5 1494 1129 166 169 101 chr11 119247467 119247551 -2596305 - ORR1A4 LTR MaLR 0 329 268 5 1494 1212 55 0 0 chr11 119247551 119247696 -2596160 - B1_Mus2 SINE Alu -2 145 1 5 1494 1129 166 169 101 chr11 119247696 119247919 -2595937 - ORR1A4 LTR MaLR -62 267 1 5 1494 1064 172 141 95 chr11 119247919 119247989 -2595867 + RMER4B LTR ERVK 459 525 -60 5 1494 830 75 8 8 chr11 119247983 119248104 -2595752 - B2_Mm1a SINE B2 -69 124 4 5 1494 1438 94 5 0 chr11 119248111 119248303 -2595553 - B2_Mm1a SINE B2 0 193 1 5 1494 746 73 23 75 chr11 119248322 119248455 -2595401 + RLTR15 LTR ERVK 230 355 -4 5 1494 539 216 103 15 chr11 119248895 119249031 -2594825 - ETnERV2-int LTR ERVK -214 7192 7045 5 1494 1535 196 120 6 chr11 119249923 119250256 -2593600 - ORR1D1 LTR MaLR -2 372 2 5 1494 430 289 65 22 chr11 119250480 119250607 -2593249 + ID_B1 SINE B4 2 137 -87 5 1494 1082 52 73 0 chr11 119250607 119250743 -2593113 + B1_Mm SINE Alu 1 146 -1 5 1494 238 154 0 0 chr11 119250787 119250826 -2593030 + ID_B1 SINE B4 130 168 -56 5 1494 345 200 4 36 chr11 119250826 119250923 -2592933 + ORR1C1 LTR MaLR 1 92 -278 5 1494 684 105 84 63 chr11 119252580 119252722 -2591134 - B1_Mur4 SINE Alu -1 149 5 5 1494 290 231 75 32 chr11 119253058 119253152 -2590704 - PB1D10 SINE Alu -2 115 18 5 1494 285 294 11 0 chr11 119253079 119253171 -2590685 - ID_B1 SINE B4 -52 172 80 5 1494 414 0 0 0 chr11 119253954 119254000 -2589856 + (TTA)n Simple_repeat Simple_repeat 2 47 0 5 1494 483 101 246 9 chr11 119254000 119254110 -2589746 - B1_Mus2 SINE Alu -2 145 10 5 1494 674 217 141 11 chr11 119254984 119255175 -2588681 + B3 SINE B2 1 216 0 5 1494 1466 138 256 6 chr11 119255973 119256301 -2587555 - RMER17C LTR ERVK 0 410 1 5 1494 1680 151 103 42 chr11 119256795 119257175 -2586681 + RLTR9D LTR ERVK 1 403 0 5 1494 2721 181 87 84 chr11 119257199 119257900 -2585956 + RMER19B LTR ERVK 1 703 -199 5 1494 575 267 30 12 chr11 119258282 119258449 -2585407 + B3 SINE B2 47 216 0 5 1494 367 75 19 0 chr11 119258553 119258606 -2585250 - ORR1B1 LTR MaLR 0 367 314 5 1494 401 54 18 0 chr11 119258616 119258672 -2585184 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 5 1494 1255 34 0 14 chr11 119258674 119258822 -2585034 - B1_Mus2 SINE Alu 0 147 2 5 1494 3637 42 16 5 chr11 119258838 119259287 -2584569 - L1Md_F2 LINE L1 0 6582 6129 5 1494 676 99 20 0 chr11 119259289 119259390 -2584466 - ORR1B1 LTR MaLR -46 348 246 5 1494 230 219 0 27 chr11 119259939 119260014 -2583842 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 5 1494 385 134 169 12 chr11 119260033 119260116 -2583740 - PB1D9 SINE Alu -3 117 22 5 1494 1104 102 0 0 chr11 119260147 119260294 -2583562 - B1_Mus1 SINE Alu 0 148 2 5 1494 580 286 63 0 chr11 119260296 119260485 -2583371 + MurERV4-int LTR ERVK 331 531 -4729 5 1494 10144 196 89 97 chr11 119260583 119262004 -2581852 + MurERV4-int LTR ERVK 991 2399 -2861 5 1494 1534 63 16 0 chr11 119262004 119262195 -2581661 + B2_Mm2 SINE B2 1 194 -1 5 1494 10144 196 89 97 chr11 119262195 119262578 -2581278 + MurERV4-int LTR ERVK 2400 2793 -2467 5 1494 961 24 0 8 chr11 119262578 119262703 -2581153 + B1_Mus2 SINE Alu 24 147 0 5 1494 10144 196 89 97 chr11 119262703 119262965 -2580891 + MurERV4-int LTR ERVK 2794 3064 -2196 5 1494 1254 27 0 33 chr11 119262965 119263118 -2580738 - B1_Mus1 SINE Alu 0 148 1 5 1494 10144 196 89 97 chr11 119263118 119263810 -2580046 + MurERV4-int LTR ERVK 3065 3852 -1408 5 1494 413 212 167 9 chr11 119264332 119264446 -2579410 + B1F2 SINE Alu 5 136 -13 5 1494 272 276 147 0 chr11 119264486 119264602 -2579254 + B1_Mm SINE Alu 1 133 -14 5 1494 670 197 13 52 chr11 119264684 119264839 -2579017 + B1_Mur3 SINE Alu 1 149 0 5 1494 891 225 17 6 chr11 119264865 119265044 -2578812 + B3 SINE B2 3 183 -33 5 1494 2994 83 27 2 chr11 119265057 119265468 -2578388 - BGLII LTR ERVK 0 421 1 5 1494 1424 187 88 1 chr11 119265471 119265814 -2578042 - ORR1B1 LTR MaLR -7 387 1 5 1494 589 212 206 0 chr11 119266036 119266196 -2577660 + B3A SINE B2 2 194 -4 5 1494 218 316 47 86 chr11 119268672 119268800 -2575056 - B1_Mm SINE Alu -22 125 3 5 1494 555 280 44 72 chr11 119268800 119268872 -2574984 - ID SINE ID -150 74 8 5 1494 1917 108 16 9 chr11 119269230 119269553 -2574303 - ORR1A4 LTR MaLR -5 369 1 5 1494 394 152 57 25 chr11 119269771 119269858 -2573998 + B3A SINE B2 9 101 -92 5 1494 237 348 67 101 chr11 119269772 119269951 -2573905 + B4 SINE B4 10 182 -110 5 1494 303 265 0 0 chr11 119271875 119271977 -2571879 + (TG)n Simple_repeat Simple_repeat 1 102 0 5 1494 521 211 9 27 chr11 119272314 119272426 -2571430 - PB1D7 SINE Alu -1 119 10 5 1494 918 131 44 0 chr11 119272459 119272596 -2571260 - B1_Mur4 SINE Alu -7 143 1 5 1494 525 176 0 0 chr11 119273483 119273591 -2570265 + (TG)n Simple_repeat Simple_repeat 2 109 0 5 1494 21 36 0 0 chr11 119273707 119273735 -2570121 + AT_rich Low_complexity Low_complexity 1 28 0 5 1494 192 97 0 0 chr11 119273745 119273776 -2570080 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1494 1120 106 82 0 chr11 119273899 119274069 -2569787 - B2_Mm2 SINE B2 -10 185 2 5 1494 189 74 0 0 chr11 119274232 119274259 -2569597 + (G)n Simple_repeat Simple_repeat 1 27 0 5 1494 639 232 78 0 chr11 119274489 119274631 -2569225 - B3 SINE B2 -30 186 34 5 1494 220 271 84 14 chr11 119274726 119274797 -2569059 - ID4_ SINE ID -6 77 2 5 1494 260 191 86 93 chr11 119274962 119275101 -2568755 - RLTR12A LTR ERVK 0 568 431 5 1494 325 273 37 188 chr11 119275207 119275326 -2568530 - BGLII_B LTR ERVK -211 230 140 5 1494 1204 68 0 0 chr11 119275326 119275473 -2568383 - B1_Mus1 SINE Alu 0 148 2 5 186 340 255 113 40 chr11 119275473 119275624 -2568232 - RLTR11A2 LTR ERVK -365 162 1 5 1495 447 68 0 0 chr11 119276621 119276680 -2567176 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 5 1495 897 25 83 0 chr11 119276690 119276811 -2567045 - B1_Mus2 SINE Alu 0 147 17 5 1495 825 223 148 5 chr11 119276821 119277010 -2566846 - B3 SINE B2 0 216 1 5 1495 189 0 0 0 chr11 119277022 119277043 -2566813 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1495 229 191 87 14 chr11 119277047 119277116 -2566740 - PB1D7 SINE Alu -30 90 17 5 1495 413 250 8 51 chr11 119277146 119277272 -2566584 + PB1 SINE Alu 13 127 -22 5 1495 516 202 0 18 chr11 119278262 119278373 -2565483 + B1_Mus2 SINE Alu 39 147 0 5 1495 252 0 0 0 chr11 119279766 119279794 -2564062 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1495 272 193 16 66 chr11 119280018 119280079 -2563777 + B4A SINE B4 3 60 -232 5 1495 390 198 125 29 chr11 119280122 119280226 -2563630 + B4 SINE B4 136 249 -43 5 1495 531 0 0 0 chr11 119280248 119280307 -2563549 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1495 617 311 49 8 chr11 119280816 119281062 -2562794 - MTEb LTR MaLR -1 378 123 5 1495 374 237 162 20 chr11 119281042 119281141 -2562715 - B3A SINE B2 -85 113 1 5 1495 883 48 186 0 chr11 119282027 119282151 -2561705 - B1_Mus2 SINE Alu 0 147 1 5 1495 217 277 28 221 chr11 119282369 119282582 -2561274 - B3 SINE B2 0 216 45 5 1495 487 288 18 0 chr11 119282481 119282592 -2561264 - RSINE1 SINE B4 -17 148 36 5 1495 221 75 36 36 chr11 119283567 119283622 -2560234 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 1495 1251 40 0 0 chr11 119283622 119283770 -2560086 - B1_Mus1 SINE Alu 0 148 1 5 1495 667 218 90 0 chr11 119283770 119283903 -2559953 - B1_Mur3 SINE Alu -2 147 3 5 1495 410 301 16 8 chr11 119284144 119284268 -2559588 - PB1 SINE Alu -2 125 1 5 1495 360 0 0 0 chr11 119284746 119284786 -2559070 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1495 1417 72 0 58 chr11 119284830 119284868 -2558988 - B2_Mm2 SINE B2 -1 194 168 6 1495 312 27 0 0 chr11 119284868 119284905 -2558951 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1495 1417 72 0 58 chr11 119284905 119285071 -2558785 - B2_Mm2 SINE B2 -28 167 2 6 1495 407 285 39 16 chr11 119285193 119285324 -2558532 - PB1D7 SINE Alu -11 139 8 6 1495 783 206 13 33 chr11 119285815 119285966 -2557890 + B1_Mur1 SINE Alu 2 149 0 6 1495 250 275 101 0 chr11 119286283 119286392 -2557464 - L1M4 LINE L1 -1173 4973 4854 6 1495 351 169 0 0 chr11 119286459 119286530 -2557326 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1495 559 302 6 12 chr11 119286536 119286697 -2557159 - RSINE1 SINE B4 -2 163 4 6 1495 233 333 43 0 chr11 119286737 119286806 -2557050 - ID4_ SINE ID -7 76 5 6 1495 26 64 0 0 chr11 119286854 119286901 -2556955 + AT_rich Low_complexity Low_complexity 1 47 0 6 1495 242 355 26 52 chr11 119287120 119287236 -2556620 - PB1D9 SINE Alu -7 113 1 6 1495 649 203 79 7 chr11 119288251 119288390 -2555466 - B1_Mur1 SINE Alu 0 149 1 6 1495 26 0 0 0 chr11 119288454 119288480 -2555376 + AT_rich Low_complexity Low_complexity 1 26 0 6 1495 570 148 9 47 chr11 119288485 119288591 -2555265 - B1_Mur3 SINE Alu -3 146 45 6 1495 228 293 17 33 chr11 119288551 119288611 -2555245 - RLTR25A LTR ERVK -545 558 500 6 1495 213 39 0 0 chr11 119289623 119289649 -2554207 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1495 599 333 27 23 chr11 119289658 119289879 -2553977 - B4A SINE B4 -13 279 58 6 1495 405 275 41 0 chr11 119290094 119290265 -2553591 + C-rich Low_complexity Low_complexity 2 179 0 6 1495 390 218 128 0 chr11 119290549 119290627 -2553229 - B1_Mur2 SINE Alu -57 92 5 6 1495 1245 90 26 26 chr11 119290644 119290838 -2553018 - B2_Mm2 SINE B2 -1 194 1 6 1495 228 250 19 0 chr11 119291176 119291228 -2552628 + PB1D10 SINE Alu 52 104 -13 6 1495 269 255 53 0 chr11 119291275 119291369 -2552487 + PB1D9 SINE Alu 15 113 -7 6 1495 263 174 167 39 chr11 119292269 119292371 -2551485 - Lx9 LINE L1 -2 7642 7528 6 1495 690 127 7 93 chr11 119292494 119292633 -2551223 - B1_Mur2 SINE Alu 0 149 23 6 1495 212 162 0 0 chr11 119292633 119292670 -2551186 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 6 1495 841 209 25 46 chr11 119293268 119293299 -2550557 - B3A SINE B2 -4 194 171 6 1495 330 26 0 0 chr11 119293299 119293338 -2550518 + (TATG)n Simple_repeat Simple_repeat 1 39 0 6 1495 841 209 25 46 chr11 119293338 119293502 -2550354 - B3A SINE B2 -28 170 3 6 1495 279 0 0 0 chr11 119293505 119293536 -2550320 + (TTG)n Simple_repeat Simple_repeat 3 33 0 6 1495 937 121 30 8 chr11 119293536 119293669 -2550187 - B1_Mur4 SINE Alu -12 138 3 6 1495 1185 120 11 11 chr11 119293700 119293885 -2549971 - B2_Mm2 SINE B2 -9 186 2 6 1495 1007 233 29 0 chr11 119293898 119294108 -2549748 - B3 SINE B2 0 216 1 6 1495 899 183 74 16 chr11 119295254 119295443 -2548413 + B3 SINE B2 3 202 -14 6 1495 240 183 243 40 chr11 119295483 119295557 -2548299 + B1F2 SINE Alu 1 89 -60 6 1495 422 177 0 36 chr11 119295531 119295614 -2548242 - B1_Mur4 SINE Alu -56 94 14 6 1495 837 199 7 7 chr11 119296831 119296978 -2546878 + B1_Mur2 SINE Alu 3 149 0 6 1495 213 132 0 0 chr11 119296978 119297016 -2546840 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1495 243 0 0 0 chr11 119299499 119299526 -2544330 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 6 1495 1683 208 85 19 chr11 119299526 119299885 -2543971 + MTD LTR MaLR 19 401 -18 6 1495 1870 199 117 11 chr11 119299885 119300331 -2543525 + MTD-int LTR MaLR 1 493 -765 6 1495 1234 41 14 0 chr11 119300896 119301041 -2542815 + B1_Mus2 SINE Alu 1 147 0 6 1495 382 233 35 88 chr11 119305692 119305707 -2538149 + MT2B LTR ERVL 151 159 -442 6 1495 774 133 35 0 chr11 119305707 119305820 -2538036 + B1_Mus2 SINE Alu 1 117 -30 6 1495 188 35 35 0 chr11 119305830 119305859 -2537997 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 1495 852 216 5 112 chr11 119305873 119306097 -2537759 + B3 SINE B2 2 201 -15 6 1495 815 112 8 8 chr11 119306536 119306662 -2537194 + URR1B DNA MER1_type 100 225 0 6 1495 601 307 74 4 chr11 119307693 119307922 -2535934 + B4 SINE B4 41 285 -7 6 1495 234 225 24 36 chr11 119308130 119308213 -2535643 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 1495 441 293 0 65 chr11 119308810 119308934 -2534922 + PB1D10 SINE Alu 1 116 -1 6 1495 697 214 130 11 chr11 119309421 119309605 -2534251 + B3 SINE B2 1 206 -10 6 1495 1179 55 7 14 chr11 119309635 119309782 -2534074 + B1_Mus2 SINE Alu 2 147 0 6 1495 275 322 49 57 chr11 119309825 119309947 -2533909 + RSINE1 SINE B4 45 165 0 6 1495 628 182 254 0 chr11 119313521 119313686 -2530170 - B3 SINE B2 -5 211 5 6 1495 843 263 0 0 chr11 119314388 119314544 -2529312 - B3A SINE B2 -41 157 2 6 1495 1424 84 16 5 chr11 119314850 119315042 -2528814 - B2_Mm2 SINE B2 0 195 2 6 1495 37 23 0 0 chr11 119315044 119315088 -2528768 + AT_rich Low_complexity Low_complexity 1 44 0 6 1495 540 277 169 0 chr11 119315188 119315336 -2528520 - B3A SINE B2 -25 173 1 6 1495 679 267 106 32 chr11 119315336 119315549 -2528307 - B4A SINE B4 -63 229 1 6 1495 246 32 0 0 chr11 119315661 119315692 -2528164 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 6 1495 569 270 102 0 chr11 119316020 119316157 -2527699 + RSINE1 SINE B4 3 153 -12 6 1495 411 21 0 0 chr11 119316204 119316252 -2527604 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1495 381 284 118 0 chr11 119317782 119317884 -2525972 + ID_B1 SINE B4 88 201 -23 6 1495 715 246 30 59 chr11 119318233 119318436 -2525420 + B3A SINE B2 2 198 0 6 1495 243 0 0 0 chr11 119318613 119318640 -2525216 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1495 1261 41 0 0 chr11 119318674 119318819 -2525037 + B1_Mus1 SINE Alu 2 146 -2 6 1495 186 71 0 0 chr11 119318819 119318847 -2525009 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 6 1495 2095 173 86 20 chr11 119319022 119319417 -2524439 - MTC LTR MaLR 0 421 1 6 1495 27 73 0 0 chr11 119322513 119322568 -2521288 + AT_rich Low_complexity Low_complexity 1 55 0 6 1495 1250 47 0 0 chr11 119322603 119322751 -2521105 - B1_Mus1 SINE Alu 0 148 1 6 1495 478 252 0 32 chr11 119322825 119322948 -2520908 - B1_Mur2 SINE Alu -2 147 29 6 1495 562 148 359 0 chr11 119322912 119323040 -2520816 - B3 SINE B2 -23 193 20 6 1495 1516 156 122 5 chr11 119324984 119325359 -2518497 + RMER4A LTR ERVK 1 430 -155 6 1495 431 248 214 64 chr11 119325931 119326198 -2517658 + Charlie1a DNA MER1_type 525 831 -624 6 1495 219 150 0 0 chr11 119326554 119326594 -2517262 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1495 311 65 0 21 chr11 119327919 119327966 -2515890 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1495 518 189 18 62 chr11 119329645 119329758 -2514098 - PB1D10 SINE Alu -4 113 6 6 1495 219 88 0 0 chr11 119329781 119329815 -2514041 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1495 186 103 0 0 chr11 119329850 119329879 -2513977 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1495 1308 27 0 0 chr11 119329879 119330026 -2513830 - B1_Mm SINE Alu 0 147 1 6 1495 204 40 0 0 chr11 119330516 119330541 -2513315 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1495 3309 52 2 2 chr11 119330543 119330948 -2512908 - L1_Mus1 LINE L1 -1 6566 6162 6 1495 594 280 159 5 chr11 119331144 119331345 -2512511 - MT2A LTR ERVL -301 232 1 6 1495 25 31 0 0 chr11 119331809 119331841 -2512015 + AT_rich Low_complexity Low_complexity 1 32 0 6 1495 21 0 0 0 chr11 119332690 119332711 -2511145 + AT_rich Low_complexity Low_complexity 1 21 0 6 1495 248 0 31 0 chr11 119333545 119333577 -2510279 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 6 1495 1166 70 0 0 chr11 119333578 119333721 -2510135 - B1_Mus1 SINE Alu -4 144 2 6 1495 272 27 0 26 chr11 119334480 119334518 -2509338 + (GGA)n Simple_repeat Simple_repeat 3 39 0 6 1495 22 0 0 0 chr11 119335046 119335068 -2508788 + AT_rich Low_complexity Low_complexity 1 22 0 6 1495 298 281 10 10 chr11 119335719 119335816 -2508040 + PB1D10 SINE Alu 21 117 0 6 1495 727 155 125 42 chr11 119336212 119336380 -2507476 - B2_Mm2 SINE B2 -9 186 5 6 1495 198 71 0 0 chr11 119336390 119336418 -2507438 + (TTTTTA)n Simple_repeat Simple_repeat 4 31 0 6 1495 1238 54 0 0 chr11 119336418 119336565 -2507291 - B1_Mus2 SINE Alu 0 147 1 6 1495 245 265 0 56 chr11 119336626 119336698 -2507158 - ID4_ SINE ID -2 81 14 6 1495 545 300 84 44 chr11 119336756 119337007 -2506849 - B4 SINE B4 -11 281 21 6 1495 1117 116 0 17 chr11 119337017 119337193 -2506663 - B2_Mm1t SINE B2 -20 173 1 6 1495 234 0 0 0 chr11 119337339 119337365 -2506491 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1495 1296 281 78 51 chr11 119339484 119339575 -2504281 - L1MA5A LINE L1 -342 5955 5867 6 1495 978 159 67 22 chr11 119339575 119339755 -2504101 + B2_Mm2 SINE B2 1 188 -7 6 1495 1296 294 102 42 chr11 119339755 119340550 -2503306 - L1MA5A LINE L1 -431 5866 4935 6 1495 2188 167 48 27 chr11 119341386 119341798 -2502058 - MTC LTR MaLR 0 421 1 6 1495 601 234 36 0 chr11 119344451 119344588 -2499268 + B1F SINE Alu 2 143 -6 6 1495 830 145 63 35 chr11 119345474 119345617 -2498239 - B1_Mus2 SINE Alu 0 147 1 6 1495 1130 78 0 0 chr11 119345722 119345875 -2497981 + B2_Mm2 SINE B2 2 154 -41 6 1495 569 365 46 27 chr11 119345879 119346138 -2497718 + B4A SINE B4 26 289 -3 6 1495 684 206 144 33 chr11 119346195 119346376 -2497480 + ID_B1 SINE B4 3 203 -21 6 1495 571 233 192 11 chr11 119346631 119346813 -2497043 - B3 SINE B2 0 216 2 7 1495 825 120 127 8 chr11 119347007 119347141 -2496715 + B1_Mur4 SINE Alu 1 150 0 7 1495 293 279 23 0 chr11 119348099 119348199 -2495657 + ID4_ SINE ID 2 103 -49 7 1495 257 279 0 16 chr11 119348285 119348347 -2495509 + ID4 SINE ID 22 82 -1 7 1495 636 250 32 39 chr11 119348748 119348902 -2494954 + RSINE1 SINE B4 3 155 -10 7 1495 290 347 169 23 chr11 119350199 119350376 -2493480 + MIRb SINE MIR 43 245 -23 7 1495 258 259 9 44 chr11 119350586 119350699 -2493157 + (CTCA)n Simple_repeat Simple_repeat 2 110 0 7 1495 234 317 24 0 chr11 119350893 119350975 -2492881 - Lx8 LINE L1 -219 7254 7171 7 1495 691 262 76 11 chr11 119351344 119351529 -2492327 + B3A SINE B2 2 198 0 7 1495 327 172 0 0 chr11 119351800 119351858 -2491998 + MT2A LTR ERVL 1 58 -475 7 1495 564 166 5 3 chr11 119351849 119351953 -2491903 + MT2A LTR ERVL 113 198 -335 7 1495 262 172 0 49 chr11 119351964 119352025 -2491831 + MLT2B3 LTR ERVL 497 554 0 7 1495 703 185 73 15 chr11 119352056 119352193 -2491663 - B1_Mus2 SINE Alu 0 147 3 7 1495 23 33 0 0 chr11 119353332 119353362 -2490494 + AT_rich Low_complexity Low_complexity 1 30 0 7 1495 3388 152 168 56 chr11 119353643 119353939 -2489917 - RMER21A LTR ERV1 -22 925 591 7 1495 225 0 0 0 chr11 119353939 119353964 -2489892 + (G)n Simple_repeat Simple_repeat 1 25 0 7 1495 3388 150 176 61 chr11 119353964 119354521 -2489335 - RMER21A LTR ERV1 -357 590 3 7 1495 618 127 246 0 chr11 119354691 119354809 -2489047 + B1_Mus2 SINE Alu 1 147 0 7 1495 409 250 45 18 chr11 119355098 119355208 -2488648 + PB1D10 SINE Alu 2 114 -3 7 1495 210 341 37 0 chr11 119355492 119355574 -2488282 + L2c LINE L2 3089 3173 -214 7 1495 1813 175 96 14 chr11 119355767 119356120 -2487736 - RLTR14 LTR ERV1 0 382 1 7 1495 1457 51 17 6 chr11 119356191 119356368 -2487488 + B2_Mm1a SINE B2 1 179 -14 7 1495 1213 227 142 21 chr11 119356899 119357273 -2486583 + MTD LTR MaLR 1 419 0 7 1495 707 135 94 8 chr11 119357318 119357445 -2486411 + B1_Mus2 SINE Alu 9 146 -1 7 1495 902 261 40 13 chr11 119357903 119358128 -2485728 - MTEa LTR MaLR -100 279 49 7 1495 1114 212 29 29 chr11 119358135 119358344 -2485512 - B3 SINE B2 -7 209 1 7 1495 514 229 166 21 chr11 119358460 119358647 -2485209 + B3 SINE B2 1 214 -2 7 1495 192 308 77 0 chr11 119358847 119358912 -2484944 - L3 LINE CR1 -69 4420 4351 7 1495 1921 221 33 7 chr11 119359255 119359776 -2484080 - Lx9 LINE L1 -3 7641 7001 7 1495 339 349 52 6 chr11 119362956 119363129 -2480727 + B3A SINE B2 2 182 -16 7 1495 461 249 73 37 chr11 119363197 119363395 -2480461 + B4 SINE B4 2 242 -50 7 1495 515 230 26 9 chr11 119363442 119363556 -2480300 - PB1D9 SINE Alu -1 119 4 7 1495 1769 130 53 12 chr11 119364207 119364521 -2479335 - ORR1A4 LTR MaLR -3 376 1 7 1495 1642 165 24 3 chr11 119366691 119366983 -2476873 - MTC LTR MaLR 0 421 124 7 1495 230 192 0 0 chr11 119367045 119367097 -2476759 - MTC LTR MaLR -246 175 124 7 1495 226 192 0 0 chr11 119367196 119367248 -2476608 - MTC LTR MaLR -246 175 124 7 1495 244 79 0 0 chr11 119367285 119367323 -2476533 - MTC LTR MaLR -260 161 124 7 1495 230 132 0 0 chr11 119367363 119367401 -2476455 - MTC LTR MaLR -260 161 124 7 1495 464 222 12 187 chr11 119367453 119367493 -2476363 - MTC LTR MaLR -270 137 101 7 1495 1642 36 5 0 chr11 119367493 119367685 -2476171 + B2_Mm1a SINE B2 1 193 0 7 1495 693 158 0 40 chr11 119367685 119367810 -2476046 - MTC LTR MaLR -301 120 1 7 1495 202 283 87 17 chr11 119371797 119371912 -2471944 + MIR3 SINE MIR 51 173 -35 7 1495 238 355 9 52 chr11 119372386 119372502 -2471354 - PB1D10 SINE Alu 0 117 7 7 1495 433 268 106 38 chr11 119372425 119372557 -2471299 - ID_B1 SINE B4 -64 160 20 7 1495 1593 53 16 0 chr11 119372557 119372747 -2471109 + B2_Mm2 SINE B2 2 194 -1 7 1495 430 199 103 137 chr11 119372941 119373145 -2470711 - B3A SINE B2 -1 197 1 7 1495 228 293 0 61 chr11 119373179 119373310 -2470546 + C-rich Low_complexity Low_complexity 3 125 0 7 1495 326 320 65 0 chr11 119373858 119374011 -2469845 + MLT1F LTR MaLR 302 464 -84 7 1495 235 91 0 0 chr11 119374310 119374343 -2469513 + ID4 SINE ID 12 44 -39 7 1495 1001 208 61 0 chr11 119374952 119375164 -2468692 + URR1A DNA MER1_type 2 226 0 7 1495 444 275 28 0 chr11 119380089 119380198 -2463658 + PB1D9 SINE Alu 2 113 -7 7 1495 227 319 174 25 chr11 119380205 119380401 -2463455 + MLT1C LTR MaLR 176 400 -67 7 1495 816 190 42 0 chr11 119382571 119382713 -2461143 + B1_Mus1 SINE Alu 1 148 0 7 1495 1816 133 57 0 chr11 119382828 119383144 -2460712 - RMER15 LTR ERVL 0 575 242 7 1495 275 149 333 51 chr11 119383144 119383222 -2460634 - RMER15 LTR ERVL -454 121 22 7 1495 191 304 100 14 chr11 119384408 119384478 -2459378 + MIRb SINE MIR 46 121 -147 7 1495 1570 206 83 14 chr11 119384523 119384873 -2458983 + ORR1D1 LTR MaLR 1 374 0 7 1495 1095 73 0 0 chr11 119385602 119385738 -2458118 + B1_Mus2 SINE Alu 2 137 -10 7 1495 909 44 0 0 chr11 119385738 119385852 -2458004 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 7 1495 834 232 48 16 chr11 119386440 119386659 -2457197 + MTD LTR MaLR 10 229 -171 7 1495 1004 80 0 0 chr11 119386661 119386799 -2457057 + B1_Mus1 SINE Alu 11 148 0 7 1495 234 204 0 115 chr11 119386841 119386902 -2456954 - B2_Mm2 SINE B2 -94 101 48 7 1495 1135 81 106 0 chr11 119386969 119387129 -2456727 - B2_Mm1t SINE B2 -14 179 3 7 1495 202 232 54 0 chr11 119387584 119387640 -2456216 + L2 LINE L2 2814 2872 -547 7 1495 200 59 0 29 chr11 119388219 119388254 -2455602 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1495 276 266 126 24 chr11 119388254 119388293 -2455563 - B1_Mus1 SINE Alu -3 145 106 7 1495 934 255 105 81 chr11 119388293 119388494 -2455362 + MTD LTR MaLR 1 200 -219 7 1495 1158 95 0 0 chr11 119388494 119388642 -2455214 + B1_Mur4 SINE Alu 2 149 -1 7 1495 934 255 105 81 chr11 119388642 119388849 -2455007 + MTD LTR MaLR 201 419 0 7 1495 276 266 126 24 chr11 119388849 119388936 -2454920 - B1_Mus1 SINE Alu -43 105 8 7 1495 240 86 0 0 chr11 119389094 119389129 -2454727 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1495 217 206 14 42 chr11 119389216 119389287 -2454569 + CT-rich Low_complexity Low_complexity 1 69 0 7 1495 221 244 0 0 chr11 119389784 119389829 -2454027 - B1F SINE Alu -104 45 1 7 1495 226 286 196 21 chr11 119389834 119389977 -2453879 - MLT1B LTR MaLR -219 171 4 7 1495 263 250 52 13 chr11 119390704 119390781 -2453075 + L1MB2 LINE L1 5077 5156 -990 7 1495 339 225 164 16 chr11 119390929 119391051 -2452805 + B3A SINE B2 4 143 -55 7 1495 533 74 37 0 chr11 119391052 119391133 -2452723 + (TCCCC)n Simple_repeat Simple_repeat 1 84 0 7 1495 28 0 0 0 chr11 119391192 119391220 -2452636 + AT_rich Low_complexity Low_complexity 1 28 0 7 1495 260 297 50 0 chr11 119391281 119391382 -2452474 + L1MB2 LINE L1 5354 5459 -724 7 1495 235 252 158 61 chr11 119391438 119391552 -2452304 + RSINE1 SINE B4 39 163 -2 7 1495 233 320 65 37 chr11 119391595 119391702 -2452154 + B3A SINE B2 1 110 -88 7 1495 331 258 85 11 chr11 119391617 119391711 -2452145 + B4 SINE B4 29 129 -163 7 1495 276 249 16 84 chr11 119391711 119391827 -2452029 + L1MB2 LINE L1 5589 5700 -480 7 1495 261 0 0 0 chr11 119391831 119391860 -2451996 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1495 948 189 66 52 chr11 119391869 119392081 -2451775 + B3 SINE B2 2 216 0 7 1495 999 131 14 0 chr11 119392081 119392225 -2451631 + B1_Mus1 SINE Alu 1 147 -1 7 1495 194 62 31 0 chr11 119392238 119392270 -2451586 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 7 1495 1018 110 0 33 chr11 119392279 119392430 -2451426 - B1_Mm SINE Alu -1 146 1 7 1495 753 198 109 31 chr11 119392446 119392639 -2451217 - B3 SINE B2 -8 208 1 7 1495 297 323 203 0 chr11 119392641 119392873 -2450983 + L1MB2 LINE L1 5690 5968 -203 7 1495 434 176 0 0 chr11 119392883 119392957 -2450899 + ID4 SINE ID 1 74 -9 7 1495 183 42 0 0 chr11 119393159 119393183 -2450673 + (GA)n Simple_repeat Simple_repeat 1 24 0 7 1495 237 363 0 66 chr11 119393239 119393334 -2450522 + RSINE1 SINE B4 48 138 -27 7 1495 552 290 120 58 chr11 119393334 119393609 -2450247 + B4A SINE B4 1 292 0 7 1495 237 363 0 66 chr11 119393609 119393634 -2450222 + RSINE1 SINE B4 139 160 -5 7 1495 465 34 0 0 chr11 119393655 119393714 -2450142 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1495 210 312 72 36 chr11 119394652 119394682 -2449174 + B4 SINE B4 54 139 -153 7 1495 265 226 0 0 chr11 119394682 119394735 -2449121 + PB1D9 SINE Alu 2 54 -66 7 1495 224 0 0 157 chr11 119394737 119394845 -2449011 + (CAGAG)n Simple_repeat Simple_repeat 5 95 0 7 1495 469 180 30 0 chr11 119394848 119394948 -2448908 + B1_Mur1 SINE Alu 42 144 -5 7 1495 400 282 0 55 chr11 119394960 119395069 -2448787 + PB1D7 SINE Alu 10 112 -8 7 1495 770 239 141 57 chr11 119395145 119395472 -2448384 - MTD LTR MaLR -21 398 1 7 1495 230 267 217 22 chr11 119396173 119396265 -2447591 + MIRc SINE MIR 20 129 -139 7 1495 396 276 107 143 chr11 119396276 119396500 -2447356 + MTE2a LTR MaLR 1 216 -163 7 1495 793 194 94 0 chr11 119396505 119396696 -2447160 - B3 SINE B2 0 216 8 7 1495 254 226 19 0 chr11 119396691 119396744 -2447112 + MTE2a LTR MaLR 204 257 -122 7 1495 2055 102 28 114 chr11 119397159 119397511 -2446345 + ORR1A2 LTR MaLR 3 324 -3 7 1495 304 342 76 0 chr11 119397559 119397717 -2446139 + RMER15 LTR ERVL 338 507 -68 7 1495 180 0 0 0 chr11 119398042 119398062 -2445794 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1495 682 177 129 0 chr11 119398081 119398205 -2445651 - B1_Mur1 SINE Alu -6 143 4 7 1495 567 65 168 44 chr11 119398220 119398333 -2445523 - B1_Mm SINE Alu 0 147 21 7 1495 237 158 31 109 chr11 119398282 119398346 -2445510 - RLTR25A LTR ERVK -544 559 501 7 1495 667 150 8 24 chr11 119398404 119398527 -2445329 + B1_Mus1 SINE Alu 28 148 0 7 1495 768 255 48 139 chr11 119399398 119399636 -2444220 + B4A SINE B4 3 226 -66 7 1495 970 221 13 74 chr11 119399636 119399866 -2443990 + B3 SINE B2 1 216 0 8 1495 768 255 48 139 chr11 119399866 119399937 -2443919 + B4A SINE B4 227 284 -8 7 1495 423 0 0 0 chr11 119399960 119400007 -2443849 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1495 354 61 0 0 chr11 119403457 119403506 -2440350 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1495 189 0 0 0 chr11 119404028 119404049 -2439807 + (GA)n Simple_repeat Simple_repeat 2 22 0 8 1495 243 103 0 0 chr11 119405588 119405627 -2438229 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 8 1496 216 0 0 0 chr11 119407072 119407096 -2436760 + (CAGGA)n Simple_repeat Simple_repeat 5 28 0 8 1496 23 0 0 0 chr11 119409166 119409189 -2434667 + GC_rich Low_complexity Low_complexity 1 23 0 8 1496 207 295 21 10 chr11 119409214 119409310 -2434546 + (CCCCG)n Simple_repeat Simple_repeat 1 97 0 8 1496 306 10 0 139 chr11 119411304 119411419 -2432437 + (GGGAGA)n Simple_repeat Simple_repeat 2 100 0 8 1496 461 218 212 3 chr11 119411825 119412038 -2431818 - MER63B DNA AcHobo -177 259 1 8 1496 445 98 12 47 chr11 119413169 119413255 -2430601 - B1_Mur4 SINE Alu 0 150 68 8 1496 291 319 12 156 chr11 119413212 119413372 -2430484 + B3A SINE B2 66 202 -14 8 1496 272 372 0 0 chr11 119413373 119413475 -2430381 + (CA)n Simple_repeat Simple_repeat 1 102 0 8 1496 284 379 68 77 chr11 119413477 119413803 -2430053 - RMER12 LTR ERVK -337 985 663 8 1496 200 367 65 41 chr11 119414442 119414690 -2429166 - L2c LINE L2 -9 3378 3096 8 1496 387 164 15 0 chr11 119414714 119414781 -2429075 + ID4 SINE ID 10 77 -6 8 1496 182 273 0 0 chr11 119416290 119416334 -2427522 - L2a LINE L2 -30 3396 3353 8 1496 269 307 0 0 chr11 119416359 119416434 -2427422 + Charlie22a DNA MER1_type 116 190 -301 8 1496 490 231 16 49 chr11 119418334 119418457 -2425399 - B1_Mur1 SINE Alu -6 143 25 8 1496 216 97 0 0 chr11 119419145 119419176 -2424680 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1496 244 213 0 0 chr11 119420652 119420699 -2423157 + C-rich Low_complexity Low_complexity 2 48 0 8 1496 1162 82 0 0 chr11 119421784 119421930 -2421926 - B1_Mus2 SINE Alu -1 146 1 8 1496 189 94 0 0 chr11 119422264 119422296 -2421560 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 8 1496 366 258 11 0 chr11 119422328 119422421 -2421435 - L1MB3 LINE L1 -50 6133 6040 8 1496 29 0 0 0 chr11 119422930 119422959 -2420897 + AT_rich Low_complexity Low_complexity 1 29 0 8 1496 1174 62 7 7 chr11 119422965 119423112 -2420744 - B1_Mm SINE Alu 0 147 1 8 1496 413 377 34 38 chr11 119423119 119423411 -2420445 - MER21B LTR ERV1 -111 752 462 8 1496 658 175 35 55 chr11 119424031 119424176 -2419680 + B1_Mur2 SINE Alu 7 148 -1 8 1496 342 0 0 0 chr11 119426911 119426949 -2416907 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1496 478 164 271 0 chr11 119427619 119427759 -2416097 + MTC LTR MaLR 24 201 -220 8 1496 898 43 0 0 chr11 119427772 119427887 -2415969 + B1_Mus2 SINE Alu 20 134 -13 8 1496 405 0 0 0 chr11 119427953 119427998 -2415858 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 8 1496 320 171 12 0 chr11 119428225 119428307 -2415549 + (TGGA)n Simple_repeat Simple_repeat 1 83 0 8 1496 1935 113 26 3 chr11 119428362 119428673 -2415183 + ORR1A3 LTR MaLR 1 318 -8 8 1496 678 217 0 0 chr11 119428753 119428914 -2414942 + (TGGA)n Simple_repeat Simple_repeat 3 163 0 8 1496 433 356 23 0 chr11 119428915 119429089 -2414767 + (TGGG)n Simple_repeat Simple_repeat 2 179 0 8 1496 756 173 0 0 chr11 119429133 119429283 -2414573 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 8 1496 991 63 79 0 chr11 119429308 119429435 -2414421 + B1_Mus2 SINE Alu 1 137 -10 8 1496 350 21 21 0 chr11 119429435 119429482 -2414374 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 8 1496 643 211 75 31 chr11 119429701 119429877 -2413979 - ORR1D1 LTR MaLR 0 374 139 8 1496 506 16 16 0 chr11 119429877 119429940 -2413916 + (GGA)n Simple_repeat Simple_repeat 2 65 0 8 1496 512 227 61 47 chr11 119429940 119430038 -2413818 - ORR1D1 LTR MaLR -173 197 33 8 1496 798 137 0 22 chr11 119430834 119430968 -2412888 + B1_Mur3 SINE Alu 18 148 -1 8 1496 423 269 87 6 chr11 119431208 119431384 -2412472 + L1MB4 LINE L1 5649 5849 -340 8 1496 307 307 104 59 chr11 119431523 119431711 -2412145 + B4 SINE B4 2 214 -78 8 1496 253 233 235 52 chr11 119431711 119431847 -2412009 + RSINE1 SINE B4 5 165 0 8 1496 307 307 104 59 chr11 119431847 119431928 -2411928 + B4 SINE B4 215 283 -9 8 1496 407 125 0 14 chr11 119431975 119431982 -2411874 + (GA)n Simple_repeat Simple_repeat 1 7 0 8 1496 2498 128 46 89 chr11 119431982 119432464 -2411392 + RMER6B LTR ERVK 1 461 0 8 1496 407 125 0 14 chr11 119432464 119432529 -2411327 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1496 318 247 86 0 chr11 119432929 119433010 -2410846 - PB1D10 SINE Alu -29 88 1 8 1496 609 299 17 6 chr11 119433033 119433211 -2410645 - B4A SINE B4 -5 287 108 8 1496 677 192 16 0 chr11 119433253 119433378 -2410478 - B1_Mur4 SINE Alu -23 127 1 8 1496 1132 37 15 0 chr11 119433438 119433573 -2410283 + B1_Mm SINE Alu 2 138 -9 8 1496 213 39 0 0 chr11 119433588 119433614 -2410242 + (TTA)n Simple_repeat Simple_repeat 1 26 0 8 1496 711 175 0 0 chr11 119433624 119433744 -2410112 + B3 SINE B2 2 121 -95 8 1496 271 254 45 0 chr11 119433726 119433819 -2410037 - B3A SINE B2 -88 107 5 8 1496 258 241 19 0 chr11 119433851 119433905 -2409951 - ID_B1 SINE B4 -67 157 103 8 1496 423 0 0 0 chr11 119434656 119434703 -2409153 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 8 1496 297 0 0 0 chr11 119434705 119434738 -2409118 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1496 233 247 136 136 chr11 119434773 119434876 -2408980 - B4 SINE B4 -48 244 142 8 1496 369 0 0 0 chr11 119435074 119435115 -2408741 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1496 220 333 0 37 chr11 119435167 119435248 -2408608 - RSINE1 SINE B4 -87 78 1 8 1496 349 325 124 8 chr11 119435255 119435282 -2408574 - ID_B1 SINE B4 -8 216 82 8 1496 354 309 11 0 chr11 119435282 119435376 -2408480 - PB1D10 SINE Alu -22 95 1 8 1496 210 220 0 0 chr11 119435437 119435496 -2408360 + GA-rich Low_complexity Low_complexity 2 60 0 8 1496 1011 80 65 0 chr11 119435634 119435772 -2408084 - B1_Mus2 SINE Alu 0 147 1 8 1496 285 98 0 0 chr11 119435789 119435830 -2408026 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 8 1496 972 129 7 20 chr11 119435833 119435983 -2407873 - B1_Mur3 SINE Alu -1 148 1 8 1496 688 265 0 0 chr11 119436008 119436144 -2407712 + B1_Mur2 SINE Alu 1 136 -13 8 1496 4172 179 42 25 chr11 119436146 119436988 -2406868 + Lx7 LINE L1 6342 7197 -499 8 1496 2301 63 13 0 chr11 119436988 119437303 -2406553 + ORR1A2 LTR MaLR 1 319 -8 8 1496 287 246 0 14 chr11 119437307 119437377 -2406479 + Lx7 LINE L1 7193 7261 -435 8 1496 192 77 0 0 chr11 119437380 119437406 -2406450 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8 1496 1076 80 13 0 chr11 119437407 119437557 -2406299 - B2_Mm2 SINE B2 -41 154 3 8 1496 492 165 10 20 chr11 119437562 119437631 -2406225 + Lx7 LINE L1 7247 7316 -380 8 1496 720 23 0 0 chr11 119437631 119437717 -2406139 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1496 1264 27 0 0 chr11 119437720 119437866 -2405990 - B1_Mus2 SINE Alu 0 147 2 8 1496 492 165 10 20 chr11 119437866 119437891 -2405965 + Lx7 LINE L1 7317 7340 -356 8 1496 207 88 0 0 chr11 119437908 119437942 -2405914 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 8 1496 566 202 19 162 chr11 119437943 119438103 -2405753 - B1_Mur1 SINE Alu -8 141 5 8 1496 241 218 149 56 chr11 119438104 119438211 -2405645 - MLT2D LTR ERVL -216 198 82 8 1496 561 288 34 11 chr11 119438833 119439012 -2404844 - RMER15 LTR ERVL -18 557 375 8 1496 3618 197 47 42 chr11 119439469 119440063 -2403793 - RMER19B LTR ERVK -12 890 292 8 1496 1251 48 0 0 chr11 119440063 119440209 -2403647 + B1_Mm SINE Alu 2 147 0 8 1496 3618 222 46 48 chr11 119440209 119440533 -2403323 - RMER19B LTR ERVK -611 291 1 8 1496 216 260 25 25 chr11 119440789 119440868 -2402988 + RSINE1 SINE B4 87 165 0 8 1496 584 184 8 34 chr11 119441134 119441252 -2402604 - B1_Mus2 SINE Alu -30 117 3 8 1496 331 235 0 148 chr11 119441139 119441274 -2402582 - MT2B LTR ERVL -337 264 150 8 1496 485 193 20 7 chr11 119442046 119442197 -2401659 + (TG)n Simple_repeat Simple_repeat 2 154 0 8 1496 267 222 28 34 chr11 119442237 119442414 -2401442 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 8 1496 486 186 35 14 chr11 119442414 119442698 -2401158 + (TG)n Simple_repeat Simple_repeat 1 290 0 8 1496 1462 70 11 0 chr11 119443282 119443468 -2400388 + B2_Mm1t SINE B2 1 188 -5 8 1496 1218 43 0 0 chr11 119443478 119443617 -2400239 + B1_Mm SINE Alu 1 139 -8 8 1496 1286 87 0 6 chr11 119443653 119443827 -2400029 + B2_Mm2 SINE B2 2 174 -21 8 1496 828 94 77 15 chr11 119443842 119443972 -2399884 + B1_Mus1 SINE Alu 10 147 -1 8 1496 1359 104 0 4 chr11 119444296 119444844 -2399012 + (TCCA)n Simple_repeat Simple_repeat 1 546 0 8 1496 321 271 10 59 chr11 119444847 119444949 -2398907 + (CCCA)n Simple_repeat Simple_repeat 4 100 0 8 1496 403 101 0 25 chr11 119444949 119445030 -2398826 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 1496 378 0 0 0 chr11 119445030 119445072 -2398784 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1496 363 288 47 23 chr11 119446553 119446681 -2397175 + RMER30 DNA MER1_type 53 183 -19 8 1496 256 355 58 35 chr11 119446914 119447086 -2396770 - MIRb SINE MIR -25 243 68 8 1496 279 0 0 0 chr11 119447442 119447473 -2396383 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1496 185 94 31 0 chr11 119447542 119447574 -2396282 + (TCTCCC)n Simple_repeat Simple_repeat 1 33 0 8 1496 288 269 40 61 chr11 119447793 119447892 -2395964 + B1F1 SINE Alu 2 98 -51 8 1496 220 220 20 0 chr11 119448664 119448714 -2395142 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1496 289 267 32 53 chr11 119449009 119449104 -2394752 + B4 SINE B4 36 128 -164 9 1496 239 218 54 18 chr11 119449126 119449182 -2394674 + RSINE1 SINE B4 108 165 0 9 1496 611 237 8 4 chr11 119449185 119449453 -2394403 + (CA)n Simple_repeat Simple_repeat 1 269 0 9 1496 2114 188 52 7 chr11 119449486 119449889 -2393967 + MTC LTR MaLR 1 421 0 9 1496 816 278 51 25 chr11 119450083 119450319 -2393537 - MTE2b LTR MaLR -84 295 54 9 1496 465 263 119 54 chr11 119450316 119450501 -2393355 + MLT1A1 LTR MaLR 200 396 -12 9 1496 937 297 49 77 chr11 119450827 119451217 -2392639 - MTE2b LTR MaLR 0 379 1 9 1496 309 167 0 77 chr11 119451272 119451350 -2392506 - MLT1A1 LTR MaLR -12 396 325 9 1496 472 282 162 41 chr11 119451602 119451918 -2391938 - MER21B LTR ERV1 -172 691 338 9 1496 694 186 251 0 chr11 119452119 119452286 -2391570 + B3 SINE B2 1 209 -7 9 1496 375 138 0 0 chr11 119452309 119452367 -2391489 + B3 SINE B2 1 58 -158 9 1496 24 32 0 0 chr11 119452446 119452477 -2391379 + AT_rich Low_complexity Low_complexity 1 31 0 9 1496 1051 59 82 0 chr11 119452481 119452616 -2391240 + B1_Mus1 SINE Alu 3 148 0 9 1496 189 94 0 0 chr11 119452623 119452655 -2391201 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1496 254 277 106 32 chr11 119453054 119453177 -2390679 - B1F1 SINE Alu -17 132 1 9 1496 226 164 102 68 chr11 119453413 119453472 -2390384 + MT2B LTR ERVL 244 304 -297 9 1496 282 226 0 61 chr11 119453420 119453486 -2390370 + B1_Mm SINE Alu 41 102 -45 9 1496 293 229 32 32 chr11 119453485 119453548 -2390308 - ID_B1 SINE B4 -68 156 94 9 1496 198 0 0 0 chr11 119453569 119453591 -2390265 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1496 341 105 34 34 chr11 119453721 119453780 -2390076 + PB1D9 SINE Alu 1 59 -61 9 1496 348 188 0 0 chr11 119453783 119453852 -2390004 + GA-rich Low_complexity Low_complexity 1 69 0 9 1496 569 147 10 0 chr11 119453855 119453951 -2389905 + B1_Mus2 SINE Alu 41 144 -5 9 1496 369 145 0 0 chr11 119453993 119454055 -2389801 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1496 222 118 0 0 chr11 119454099 119454133 -2389723 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1496 841 259 167 39 chr11 119454895 119455123 -2388733 + B4 SINE B4 3 269 -23 9 1496 252 0 0 0 chr11 119455123 119455151 -2388705 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1496 841 259 167 39 chr11 119455151 119455179 -2388677 + B4 SINE B4 270 292 0 9 1496 1016 173 49 45 chr11 119455373 119455622 -2388234 + RMER10A LTR ERVL 2 244 -154 9 1496 254 134 47 0 chr11 119455899 119455955 -2387901 - ORR1D1 LTR MaLR 0 421 327 9 1496 337 246 23 147 chr11 119455927 119456056 -2387800 + MT2B LTR ERVL 152 264 -337 9 1496 909 167 7 0 chr11 119455944 119456088 -2387768 + B1_Mur3 SINE Alu 2 146 -3 9 1496 291 28 0 0 chr11 119456088 119456124 -2387732 + (CAA)n Simple_repeat Simple_repeat 2 37 0 9 1496 215 100 50 0 chr11 119456130 119456170 -2387686 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 9 1496 864 42 200 0 chr11 119456288 119456408 -2387448 + B1_Mus1 SINE Alu 5 148 0 9 1496 407 246 108 66 chr11 119456724 119457011 -2386845 + RMER10A LTR ERVL 124 422 -20 9 1496 271 280 32 148 chr11 119457122 119457277 -2386579 + MT2A LTR ERVL 2 138 -395 9 1496 1195 280 110 0 chr11 119457156 119457492 -2386364 + MTD LTR MaLR 47 419 0 9 1496 613 274 37 0 chr11 119457510 119457645 -2386211 - ID_B1 SINE B4 -58 166 27 9 1496 264 289 26 0 chr11 119457679 119457755 -2386101 - ID4_ SINE ID -4 79 2 9 1496 189 0 0 0 chr11 119457761 119457782 -2386074 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 9 1496 690 143 67 0 chr11 119457845 119457950 -2385906 - B3 SINE B2 -103 113 2 9 1496 732 204 73 0 chr11 119458302 119458439 -2385417 + B1_Mur2 SINE Alu 3 149 0 9 1496 386 273 182 0 chr11 119458455 119458576 -2385280 - B1F2 SINE Alu -6 143 1 9 1496 472 226 118 0 chr11 119458481 119458600 -2385256 - ID_B1 SINE B4 -34 190 62 9 1496 315 93 52 26 chr11 119459617 119459694 -2384162 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 9 1496 634 283 106 87 chr11 119459695 119459869 -2383987 - B4 SINE B4 -10 282 87 9 1496 557 200 173 16 chr11 119459869 119459996 -2383860 - B1_Mur1 SINE Alu -1 148 2 9 1496 634 283 106 87 chr11 119459996 119460096 -2383760 - B4 SINE B4 -206 86 3 9 1496 204 135 0 0 chr11 119460905 119460942 -2382914 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 9 1496 484 302 86 0 chr11 119460947 119461086 -2382770 - ID_B1 SINE B4 -2 222 72 9 1496 235 206 46 17 chr11 119461106 119461279 -2382577 + (TG)n Simple_repeat Simple_repeat 2 179 0 9 1496 801 161 80 0 chr11 119461484 119461621 -2382235 - B1_Mur3 SINE Alu -1 148 1 9 1496 288 173 0 19 chr11 119461652 119461705 -2382151 - B4 SINE B4 -6 286 235 9 1496 421 228 68 34 chr11 119461727 119461845 -2382011 - B3 SINE B2 -6 210 89 9 1496 318 302 79 111 chr11 119461955 119462180 -2381676 - RSINE1 SINE B4 -16 276 67 9 1496 1798 178 24 61 chr11 119462614 119463040 -2380816 + RMER17C LTR ERVK 1 410 0 9 1496 835 116 71 21 chr11 119463096 119463237 -2380619 - B1_Mur3 SINE Alu -1 148 1 9 1496 245 184 0 0 chr11 119463264 119463313 -2380543 - B1F SINE Alu 0 149 101 9 1496 585 53 0 0 chr11 119463526 119463601 -2380255 + B1_Mm SINE Alu 73 147 0 9 1496 351 125 0 0 chr11 119463601 119463673 -2380183 + (A)n Simple_repeat Simple_repeat 1 72 0 9 1496 740 142 39 23 chr11 119466311 119466441 -2377415 - B1_Mur4 SINE Alu 0 150 19 9 1496 358 214 55 86 chr11 119466338 119466466 -2377390 - MT2B LTR ERVL -323 278 155 9 1496 426 246 43 26 chr11 119466509 119466626 -2377230 + PB1D7 SINE Alu 2 120 0 9 1496 712 242 91 53 chr11 119466914 119467033 -2376823 - ID_B1 SINE B4 -5 219 90 9 1496 1432 73 10 15 chr11 119467033 119467228 -2376628 - B2_Mm2 SINE B2 -1 194 1 9 1496 712 242 91 53 chr11 119467228 119467317 -2376539 - ID SINE ID -135 89 3 9 1496 880 116 8 15 chr11 119467360 119467491 -2376365 + B1_Mur4 SINE Alu 9 138 -12 9 1496 296 96 0 37 chr11 119467491 119467545 -2376311 + MurSatRep1 Unknown Unknown 231 282 -1855 9 1496 533 304 108 60 chr11 119467730 119467806 -2376050 + Charlie20a DNA Charlie 383 472 -335 9 1496 1498 54 16 0 chr11 119467806 119467992 -2375864 - B2_Mm2 SINE B2 -4 191 3 9 1496 533 304 108 60 chr11 119467992 119468314 -2375542 + Charlie20a DNA Charlie 473 800 -7 9 1496 334 240 61 88 chr11 119468332 119468446 -2375410 + B1F SINE Alu 34 144 -5 9 1496 200 306 45 45 chr11 119469521 119469610 -2374246 + L2a LINE L2 3097 3185 -241 9 1496 261 221 190 25 chr11 119469811 119469878 -2373978 - MIRb SINE MIR -103 165 85 9 1496 1517 105 268 19 chr11 119469878 119470139 -2373717 - ORR1A3 LTR MaLR 0 326 1 9 1496 261 221 190 25 chr11 119470139 119470150 -2373706 - MIRb SINE MIR -184 84 74 9 1496 296 306 148 32 chr11 119470253 119470442 -2373414 + Charlie1a DNA MER1_type 119 329 -1126 9 1496 703 181 58 0 chr11 119470465 119470603 -2373253 - B1_Mur4 SINE Alu 0 150 5 9 1496 435 222 139 15 chr11 119471543 119471680 -2372176 + Charlie1a DNA MER1_type 578 731 -724 9 1496 764 242 55 107 chr11 119471868 119471947 -2371909 + Charlie1a DNA MER1_type 1121 1196 -259 9 1496 879 133 122 39 chr11 119471947 119472127 -2371729 + B2_Mm2 SINE B2 1 195 0 9 1496 764 242 55 107 chr11 119472127 119472394 -2371462 + Charlie1a DNA MER1_type 1197 1449 -6 9 1496 507 45 0 0 chr11 119472543 119472609 -2371247 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 9 1496 561 171 29 0 chr11 119472609 119472704 -2371152 - B1_Mur3 SINE Alu -11 138 41 9 1496 247 231 100 25 chr11 119472640 119472720 -2371136 - RLTR25B LTR ERVK -519 509 424 9 1496 180 179 0 0 chr11 119472859 119472898 -2370958 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1496 237 246 35 0 chr11 119474254 119474311 -2369545 - L1MC4 LINE L1 -216 7826 7768 9 1496 563 199 7 78 chr11 119474335 119474477 -2369379 + ORR1D1 LTR MaLR 1 132 -242 9 1496 247 157 59 0 chr11 119474476 119474527 -2369329 + ORR1D1 LTR MaLR 317 370 0 9 1496 364 197 49 8 chr11 119474724 119474847 -2369009 + CT-rich Low_complexity Low_complexity 3 130 0 9 1496 285 242 58 26 chr11 119474924 119475024 -2368832 - MTEa LTR MaLR -13 406 291 9 1496 905 149 107 6 chr11 119475898 119476067 -2367789 - RLTR17 LTR ERVK -332 360 175 9 1496 902 261 128 30 chr11 119476186 119476521 -2367335 - MTEb LTR MaLR 0 379 12 9 1496 609 324 83 24 chr11 119477484 119477857 -2365999 - L1MEc LINE L1 -4250 2150 1756 9 1496 225 211 0 0 chr11 119477875 119477932 -2365924 + CT-rich Low_complexity Low_complexity 5 61 0 9 1496 405 0 0 0 chr11 119477932 119477977 -2365879 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 9 1496 521 218 19 0 chr11 119477977 119478086 -2365770 - PB1D7 SINE Alu -4 123 6 9 1496 251 314 19 47 chr11 119478034 119478141 -2365715 - B4A SINE B4 -148 144 41 9 1496 767 167 218 0 chr11 119478192 119478366 -2365490 - B3 SINE B2 -3 213 2 9 1496 358 203 0 0 chr11 119479305 119479374 -2364482 + B3 SINE B2 143 211 -5 9 1496 489 269 43 58 chr11 119479405 119479543 -2364313 - RSINE1 SINE B4 -29 136 1 9 1496 732 150 158 0 chr11 119479588 119479715 -2364141 - B1_Mus2 SINE Alu 0 147 1 9 1496 332 305 28 45 chr11 119479993 119480127 -2363729 - PB1D9 SINE Alu -1 146 7 9 1496 250 322 32 53 chr11 119480047 119480142 -2363714 - B4A SINE B4 -119 173 81 9 1496 324 83 0 0 chr11 119480379 119480427 -2363429 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 9 1496 314 331 112 77 chr11 119480493 119480703 -2363153 - L1MEe LINE L1 -3738 2408 2189 9 1496 793 174 0 22 chr11 119480703 119480838 -2363018 - B1_Mus1 SINE Alu -16 132 1 9 1496 314 331 112 77 chr11 119480838 119480912 -2362944 - L1MEe LINE L1 -3958 2188 2114 9 1496 279 253 116 0 chr11 119481133 119481228 -2362628 - L1MEe LINE L1 -4513 1653 1548 9 1496 216 0 0 0 chr11 119481494 119481518 -2362338 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1496 374 295 53 8 chr11 119481539 119481672 -2362184 + ID_B1 SINE B4 5 143 -81 9 1496 583 193 18 27 chr11 119482006 119482118 -2361738 - PB1D9 SINE Alu -9 111 1 1 1496 776 171 96 6 chr11 119482141 119482318 -2361538 - B2_Mm2 SINE B2 0 195 3 1 1496 395 292 80 75 chr11 119482344 119482544 -2361312 - B4 SINE B4 -6 286 86 1 1496 204 125 0 0 chr11 119483184 119483216 -2360640 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1496 243 152 227 0 chr11 119484206 119484272 -2359584 + BC1_Mm scRNA scRNA 11 91 -61 1 1496 681 236 0 69 chr11 119484282 119484441 -2359415 + B3 SINE B2 1 148 -68 1 1496 1026 201 32 9 chr11 119484601 119484817 -2359039 - URR1B DNA MER1_type 0 225 5 1 1496 212 241 0 36 chr11 119487941 119487965 -2355891 + polypyrimidine Low_complexity Low_complexity 33 56 0 1 1496 1256 106 26 5 chr11 119487965 119488155 -2355701 - B2_Mm2 SINE B2 0 195 2 1 1496 212 241 0 36 chr11 119488155 119488186 -2355670 + polypyrimidine Low_complexity Low_complexity 3 32 0 1 1496 688 227 139 11 chr11 119488681 119488868 -2354988 - B3 SINE B2 -5 211 1 1 1496 3226 202 68 77 chr11 119488923 119489617 -2354239 + RMER19B LTR ERVK 1 686 -216 1 1496 1220 55 7 0 chr11 119489617 119489762 -2354094 + B1_Mm SINE Alu 2 147 0 1 1496 3226 202 68 77 chr11 119489762 119489870 -2353986 + RMER19B LTR ERVK 687 796 -106 1 1496 21 36 0 0 chr11 119490396 119490424 -2353432 + AT_rich Low_complexity Low_complexity 1 28 0 1 1496 264 220 51 0 chr11 119490784 119490843 -2353013 + ID4_ SINE ID 2 63 -20 1 1496 551 251 156 44 chr11 119491005 119491230 -2352626 - L1MA8 LINE L1 -362 5929 5680 1 1496 672 102 42 17 chr11 119491585 119491705 -2352151 - L1_Mus2 LINE L1 0 6566 6444 1 1496 502 241 34 8 chr11 119491768 119491885 -2351971 - B1F2 SINE Alu 0 149 30 1 1496 234 292 171 34 chr11 119492628 119492745 -2351111 - B4 SINE B4 -57 235 103 1 1496 516 198 0 46 chr11 119492645 119492761 -2351095 - PB1D7 SINE Alu -5 115 7 1 1496 244 271 58 47 chr11 119493237 119493427 -2350429 - L1M5 LINE L1 -2612 3534 3343 1 1496 775 270 57 34 chr11 119494323 119494676 -2349180 + Charlie1a DNA MER1_type 1061 1421 -34 1 1496 779 194 229 22 chr11 119494700 119494879 -2348977 + B3 SINE B2 1 216 0 1 1496 243 0 0 0 chr11 119495019 119495046 -2348810 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1496 351 0 0 0 chr11 119495262 119495301 -2348555 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1496 255 267 19 19 chr11 119495949 119495999 -2347857 + polypurine Low_complexity Low_complexity 1 50 0 1 1496 285 75 0 0 chr11 119495999 119496039 -2347817 + (CAT)n Simple_repeat Simple_repeat 2 41 0 1 1496 255 267 19 19 chr11 119496039 119496091 -2347765 + polypurine Low_complexity Low_complexity 51 102 0 1 1496 232 156 0 43 chr11 119496489 119496536 -2347320 + 4.5SRNA scRNA scRNA 44 88 -6 1 1496 31 68 0 0 chr11 119497374 119497433 -2346423 + AT_rich Low_complexity Low_complexity 1 59 0 1 1496 210 407 0 0 chr11 119498006 119498087 -2345769 - ID4_ SINE ID 0 83 3 1 1496 657 264 21 0 chr11 119498088 119498232 -2345624 - B1F SINE Alu -2 147 1 1 1496 540 311 63 76 chr11 119498249 119498486 -2345370 - B4 SINE B4 0 292 59 1 1496 850 131 44 0 chr11 119499391 119499528 -2344328 - B1_Mur3 SINE Alu -6 143 1 1 1496 328 232 100 14 chr11 119499583 119499653 -2344203 - ID4_ SINE ID -6 77 2 1 1496 764 325 94 17 chr11 119500080 119500431 -2343425 - MER68 LTR ERVL -88 475 98 1 1496 627 130 0 0 chr11 119501164 119501264 -2342592 + (TCC)n Simple_repeat Simple_repeat 3 102 0 2 1496 319 266 47 71 chr11 119501685 119501770 -2342086 + PB1D10 SINE Alu 30 112 -37 3 1496 647 269 113 4 chr11 119501890 119502208 -2341648 - L1MD2 LINE L1 -296 5946 5588 4 1496 947 254 88 96 chr11 119503916 119504269 -2339587 - MTE2a LTR MaLR -15 364 15 5 1496 303 233 103 110 chr11 119504334 119504360 -2339496 + MT2B LTR ERVL 143 218 -383 6 1496 503 143 163 0 chr11 119504360 119504458 -2339398 + B1_Mur4 SINE Alu 1 114 -36 7 1496 303 233 103 110 chr11 119504458 119504479 -2339377 + MT2B LTR ERVL 219 286 -315 6 1496 203 194 0 0 chr11 119505715 119505751 -2338105 + (CAT)n Simple_repeat Simple_repeat 1 36 0 8 1496 622 123 113 0 chr11 119505758 119505864 -2337992 - B1_Mur4 SINE Alu 0 150 33 9 1496 428 271 0 10 chr11 119505954 119506051 -2337805 + RSINE1 SINE B4 8 103 -62 1 1496 297 68 0 0 chr11 119506078 119506122 -2337734 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1496 608 144 127 0 chr11 119507941 119508069 -2335787 + B1_Mus2 SINE Alu 1 144 -6 1 1496 231 114 0 0 chr11 119508069 119508104 -2335752 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1496 752 119 53 12 chr11 119508115 119508285 -2335571 + GA-rich Low_complexity Low_complexity 4 180 0 1 1496 266 237 0 156 chr11 119508498 119508588 -2335268 - MT2B LTR ERVL -346 255 180 1 1496 415 267 0 0 chr11 119508509 119508595 -2335261 - B1_Mur2 SINE Alu -55 94 9 1 1496 274 347 0 31 chr11 119508595 119508607 -2335249 - ID_B1 SINE B4 -52 172 78 1 1496 674 264 24 30 chr11 119509177 119509341 -2334515 + B4 SINE B4 49 211 -81 1 1496 340 286 40 10 chr11 119509567 119509666 -2334190 - PB1D10 SINE Alu -13 104 3 1 1496 23 0 0 0 chr11 119511441 119511464 -2332392 + AT_rich Low_complexity Low_complexity 1 23 0 2 1496 501 151 0 0 chr11 119511584 119511670 -2332186 + CT-rich Low_complexity Low_complexity 2 87 0 2 1496 184 214 48 0 chr11 119512786 119512828 -2331028 + L2a LINE L2 3116 3159 -267 2 1496 736 196 15 8 chr11 119513209 119513343 -2330513 - B1_Mur3 SINE Alu -14 135 1 2 1496 595 269 22 7 chr11 119513367 119513502 -2330354 - B1F SINE Alu 0 149 13 2 1496 665 302 35 25 chr11 119514276 119514473 -2329383 - B4A SINE B4 -92 200 2 2 1496 527 278 79 7 chr11 119514741 119514893 -2328963 - RSINE1 SINE B4 0 165 3 2 1496 1264 5 0 42 chr11 119515629 119515842 -2328014 + (TTC)n Simple_repeat Simple_repeat 1 204 0 2 1496 1005 61 0 179 chr11 119515852 119516031 -2327825 - B1_Mus2 SINE Alu 0 147 1 2 1496 768 243 64 5 chr11 119516598 119516801 -2327055 + B3 SINE B2 1 215 -1 2 1496 1384 259 79 8 chr11 119516893 119517247 -2326609 + MTEb LTR MaLR 1 379 0 3 1496 1167 42 21 0 chr11 119517781 119517924 -2325932 - B1_Mus1 SINE Alu -1 147 2 3 1496 605 209 17 0 chr11 119518387 119518502 -2325354 + PB1D9 SINE Alu 3 119 -1 3 1496 229 245 0 70 chr11 119519581 119519638 -2324218 - RSINE1 SINE B4 -111 54 2 3 1496 195 325 65 0 chr11 119519646 119519723 -2324133 - MIR SINE MIR -122 140 59 3 1496 534 233 17 8 chr11 119519772 119519889 -2323967 + B1_Mur1 SINE Alu 7 124 -25 3 1496 1469 70 16 0 chr11 119520092 119520278 -2323578 + B2_Mm2 SINE B2 2 190 -5 3 1496 369 0 0 0 chr11 119520288 119520329 -2323527 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 1496 266 274 163 23 chr11 119520338 119520424 -2323432 - PB1D10 SINE Alu -19 98 1 3 1496 2474 75 19 0 chr11 119521358 119521679 -2322177 + ORR1A2 LTR MaLR 1 327 0 3 1496 6285 132 103 18 chr11 119521679 119522829 -2321027 + ORR1A2-int LTR MaLR 1 1248 -10 3 1496 928 93 167 47 chr11 119522810 119522969 -2320887 + ORR1A2 LTR MaLR 14 195 -212 3 1496 791 101 149 0 chr11 119522969 119523110 -2320746 + B2_Mm2 SINE B2 2 164 -29 4 1496 1242 54 0 0 chr11 119523110 119523257 -2320599 - B1_Mus1 SINE Alu 0 148 2 4 1496 782 163 145 0 chr11 119523257 119523281 -2320575 + B2_Mm1t SINE B2 165 190 -3 4 1496 1345 48 161 0 chr11 119523283 119523469 -2320387 + MTB LTR MaLR 185 400 0 4 1496 399 289 157 1 chr11 119523822 119523993 -2319863 - MLT1A1 LTR MaLR -12 396 160 4 1496 604 128 11 0 chr11 119524050 119524144 -2319712 - B1_Mur3 SINE Alu -21 128 34 4 1496 456 296 37 46 chr11 119525911 119526127 -2317729 + Charlie23a DNA MER1_type 74 287 -52 4 1496 702 44 0 0 chr11 119526624 119526714 -2317142 + (TG)n Simple_repeat Simple_repeat 2 91 0 4 1496 273 89 0 0 chr11 119526732 119526777 -2317079 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1496 1179 90 6 24 chr11 119526951 119527121 -2316735 + B2_Mm1t SINE B2 1 167 -26 4 1496 394 109 0 0 chr11 119527168 119527223 -2316633 + B2_Mm2 SINE B2 47 101 -94 4 1496 309 109 0 0 chr11 119527566 119527612 -2316244 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1496 197 159 23 0 chr11 119527612 119527656 -2316200 + GA-rich Low_complexity Low_complexity 2 46 0 5 1496 1355 241 102 64 chr11 119527664 119528196 -2315660 - RMER15 LTR ERVL -23 552 1 5 1496 697 151 230 43 chr11 119528302 119528489 -2315367 + URR1B DNA MER1_type 2 223 -2 5 1496 405 301 172 0 chr11 119528882 119529068 -2314788 + ID_B1 SINE B4 1 218 -6 5 1496 548 284 152 27 chr11 119530217 119530474 -2313382 + Charlie1a DNA MER1_type 540 828 -627 5 1496 809 229 46 95 chr11 119530470 119530754 -2313102 + RLTR20D LTR ERVK 18 287 -281 5 1496 357 264 97 26 chr11 119530732 119530797 -2313059 + RLTR20D LTR ERVK 401 476 -92 5 1496 366 85 0 0 chr11 119530797 119530856 -2313000 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1496 357 264 97 26 chr11 119530856 119530903 -2312953 + RLTR20D LTR ERVK 477 521 -47 5 1496 205 0 114 0 chr11 119531099 119531134 -2312722 + (TGAG)n Simple_repeat Simple_repeat 4 42 0 5 1496 470 242 21 0 chr11 119531262 119531357 -2312499 - ID_B1 SINE B4 -46 178 82 5 1496 315 104 0 0 chr11 119531359 119531407 -2312449 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 6 1496 311 274 56 16 chr11 119531407 119531533 -2312323 - ORR1A4 LTR MaLR -51 278 148 6 1496 480 214 0 22 chr11 119531446 119531537 -2312319 - ID_B1 SINE B4 -132 92 4 5 1496 678 279 56 5 chr11 119531615 119531813 -2312043 - B3 SINE B2 -7 209 2 6 1496 255 191 0 0 chr11 119531891 119531938 -2311918 - ID_B1 SINE B4 -47 177 131 6 1496 285 180 40 0 chr11 119531896 119531946 -2311910 - PB1D10 SINE Alu -26 91 40 6 1496 358 186 174 10 chr11 119531949 119532047 -2311809 + Charlie1a DNA MER1_type 1340 1453 -2 5 1496 504 143 0 0 chr11 119532187 119532285 -2311571 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 6 1496 1554 180 92 75 chr11 119534155 119534581 -2309275 - RMER10A LTR ERVL -7 435 3 6 1496 212 111 0 22 chr11 119534718 119534764 -2309092 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1496 270 143 56 14 chr11 119534878 119534949 -2308907 + C-rich Low_complexity Low_complexity 2 75 0 6 1496 926 150 7 13 chr11 119534949 119535098 -2308758 - B1_Mur3 SINE Alu -1 148 1 6 1496 505 195 344 0 chr11 119535118 119535272 -2308584 - B3 SINE B2 -8 208 2 7 1497 775 163 7 21 chr11 119539238 119539382 -2304474 + B1_Mus2 SINE Alu 5 146 -1 7 1497 857 17 256 0 chr11 119540207 119540324 -2303532 + B1_Mus1 SINE Alu 2 148 0 7 1497 300 127 0 0 chr11 119540327 119540382 -2303474 + (A)n Simple_repeat Simple_repeat 1 55 0 7 1497 244 197 0 153 chr11 119540428 119540500 -2303356 - B4A SINE B4 -42 250 190 7 1497 371 369 28 7 chr11 119540497 119540639 -2303217 + B4A SINE B4 6 150 -142 7 1497 1104 70 14 20 chr11 119541776 119541922 -2301934 + B1_Mus2 SINE Alu 3 147 0 7 1497 233 310 20 0 chr11 119542759 119542859 -2300997 - L1ME3 LINE L1 -8 6154 6053 7 1497 284 225 108 40 chr11 119542891 119542965 -2300891 - ID4_ SINE ID -4 79 1 7 1497 247 277 113 21 chr11 119543067 119543295 -2300561 - L1ME3 LINE L1 -326 5853 5602 7 1497 212 322 43 17 chr11 119546075 119546192 -2297664 + ID_B1 SINE B4 47 166 -58 7 1497 306 127 42 0 chr11 119546295 119546366 -2297490 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 1497 364 249 11 53 chr11 119546485 119546672 -2297184 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1497 492 286 70 75 chr11 119547815 119548015 -2295841 + B4A SINE B4 87 285 -7 8 1497 279 0 0 0 chr11 119548489 119548520 -2295336 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1497 264 258 0 15 chr11 119548543 119548610 -2295246 - PB1D10 SINE Alu -5 112 47 8 1497 270 314 78 62 chr11 119548583 119548712 -2295144 - MTE-int LTR MaLR -8 1572 1442 8 1497 1213 278 116 68 chr11 119548690 119549706 -2294150 - MTE-int LTR MaLR -351 1229 1 8 1497 252 182 22 44 chr11 119549740 119549817 -2294039 + MTE2b LTR MaLR 176 251 -108 8 1497 368 248 5 15 chr11 119549998 119550096 -2293760 - PB1 SINE Alu 0 149 32 8 1497 2111 163 24 18 chr11 119550173 119550554 -2293302 + ORR1C2 LTR MaLR 1 383 -1 8 1497 219 260 0 20 chr11 119551208 119551259 -2292597 + B1F SINE Alu 93 142 -7 8 1497 194 0 39 0 chr11 119553004 119553030 -2290826 + (CAA)n Simple_repeat Simple_repeat 3 29 0 9 1497 682 170 55 69 chr11 119553038 119553183 -2290673 + B1_Mur3 SINE Alu 1 143 -6 9 1497 1313 160 207 16 chr11 119553295 119553600 -2290256 - ORR1D1 LTR MaLR -11 363 1 9 1497 304 211 17 17 chr11 119553602 119553660 -2290196 - B1_Mur1 SINE Alu -40 109 52 9 1497 902 252 30 39 chr11 119553675 119553906 -2289950 - B4A SINE B4 -61 231 3 9 1497 599 278 110 8 chr11 119553989 119554225 -2289631 + B4A SINE B4 2 261 -31 9 1497 1796 188 124 5 chr11 119554757 119555127 -2288729 - MTC LTR MaLR -7 414 1 9 1497 1142 137 44 0 chr11 119557040 119557222 -2286634 + B2_Mm2 SINE B2 1 190 -5 9 1497 371 253 42 0 chr11 119557782 119557877 -2285979 - PB1D7 SINE Alu -9 111 13 9 1497 314 333 17 9 chr11 119558058 119558173 -2285683 - L1MC4a LINE L1 -1705 6177 6062 9 1497 217 237 37 62 chr11 119559053 119559134 -2284722 + PB1D9 SINE Alu 22 100 -20 1 1497 267 31 0 0 chr11 119559157 119559189 -2284667 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1497 4492 16 0 0 chr11 119560384 119560877 -2282979 + MT2_Mm LTR ERVL 1 493 0 1 1497 48288 16 8 0 chr11 119560877 119566197 -2277659 + MERVL-int LTR ERVL 1 5360 -125 1 1497 386 179 46 35 chr11 119566197 119566284 -2277572 + ORR1A3-int LTR MaLR 553 640 -1323 1 1497 319 0 0 0 chr11 119566284 119566322 -2277534 + MERVL-int LTR ERVL 5448 5485 0 1 1497 4492 16 0 0 chr11 119566322 119566815 -2277041 + MT2_Mm LTR ERVL 1 493 0 1 1497 1663 184 98 22 chr11 119567690 119568057 -2275799 - MTD LTR MaLR 0 419 25 1 1497 313 333 158 58 chr11 119568540 119569241 -2274615 - L1MC5 LINE L1 -464 7497 6727 1 1497 189 74 0 0 chr11 119569241 119569268 -2274588 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1497 314 138 17 0 chr11 119569450 119569508 -2274348 + CT-rich Low_complexity Low_complexity 2 60 0 1 1497 847 205 19 29 chr11 119569750 119569945 -2273911 + B3 SINE B2 1 190 -5 1 1497 490 249 22 146 chr11 119569952 119570178 -2273678 - B3A SINE B2 0 198 1 1 1497 351 167 0 32 chr11 119572760 119572822 -2271034 + B1_Mur4 SINE Alu 1 60 -90 1 1497 648 0 0 0 chr11 119572839 119572911 -2270945 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1497 676 139 0 9 chr11 119572934 119573043 -2270813 + B1_Mur3 SINE Alu 42 149 0 1 1497 519 112 0 0 chr11 119573811 119573909 -2269947 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1497 1317 213 174 0 chr11 119574193 119574503 -2269353 + MTD LTR MaLR 41 404 -15 1 1497 207 0 0 0 chr11 119575381 119575404 -2268452 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1497 25 0 0 0 chr11 119576328 119576353 -2267503 + AT_rich Low_complexity Low_complexity 1 25 0 1 1497 586 135 9 63 chr11 119576776 119576887 -2266969 - B1_Mur4 SINE Alu 0 150 46 1 1497 262 248 44 114 chr11 119576790 119576904 -2266952 - B4 SINE B4 -73 219 114 1 1497 307 322 144 33 chr11 119577990 119578350 -2265506 + RMER10A LTR ERVL 12 411 -31 1 1497 405 211 46 151 chr11 119578350 119578380 -2265476 - RMER10A LTR ERVL -23 419 393 1 1497 2486 142 85 85 chr11 119578380 119578909 -2264947 - RLTR24 LTR ERV1 0 529 1 1 1497 405 211 46 151 chr11 119578909 119579096 -2264760 - RMER10A LTR ERVL -50 392 225 1 1497 944 243 19 10 chr11 119579751 119579959 -2263897 + B3 SINE B2 7 216 0 1 1497 416 165 150 30 chr11 119579972 119580072 -2263784 + PB1D9 SINE Alu 9 120 0 1 1497 685 241 128 5 chr11 119580173 119580361 -2263495 - B3 SINE B2 -5 211 1 1 1497 226 101 4 0 chr11 119580370 119580410 -2263446 - PB1D10 SINE Alu -8 119 76 1 1497 4653 141 87 55 chr11 119580438 119581300 -2262556 + RMER19B LTR ERVK 1 890 -12 1 1497 427 266 8 42 chr11 119582960 119583078 -2260778 - PB1D10 SINE Alu -3 114 1 1 1497 1126 289 112 27 chr11 119583086 119583776 -2260080 - Lx8 LINE L1 -22 7451 6662 1 1497 244 120 40 0 chr11 119583817 119583867 -2259989 + CT-rich Low_complexity Low_complexity 2 53 0 1 1497 705 173 110 0 chr11 119583899 119584026 -2259830 - B1_Mus2 SINE Alu -6 141 1 1 1497 465 295 161 22 chr11 119584026 119584300 -2259556 - Lx8 LINE L1 -806 6667 6356 1 1497 1246 227 6 173 chr11 119584312 119584425 -2259431 + L1_Mur3 LINE L1 4243 4343 -1537 1 1497 237 29 0 54 chr11 119584425 119584462 -2259394 + B1_Mus2 SINE Alu 113 147 0 1 1497 1246 227 6 173 chr11 119584462 119584845 -2259011 + L1_Mur3 LINE L1 4344 4686 -1194 1 1497 1200 61 0 0 chr11 119585258 119585405 -2258451 - B1_Mus2 SINE Alu 0 147 1 1 1497 485 254 16 56 chr11 119587555 119587680 -2256176 - RSINE1 SINE B4 0 165 46 1 1497 207 0 0 0 chr11 119587887 119587910 -2255946 + (CATCT)n Simple_repeat Simple_repeat 2 24 0 1 1497 189 107 0 0 chr11 119587951 119587979 -2255877 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1497 2208 51 33 20 chr11 119588081 119588381 -2255475 - IAPLTR2b LTR ERVK -23 304 1 1 1497 710 281 43 38 chr11 119588384 119588595 -2255261 - B4A SINE B4 -42 250 39 1 1497 406 276 103 88 chr11 119588581 119588843 -2255013 - ORR1E LTR MaLR -92 267 2 1 1497 281 322 82 7 chr11 119589169 119589316 -2254540 - L1M5 LINE L1 -832 5314 5157 1 1497 23 0 0 0 chr11 119589450 119589473 -2254383 + AT_rich Low_complexity Low_complexity 1 23 0 1 1497 567 278 83 94 chr11 119589477 119589904 -2253952 - RLTR11B LTR ERVK -65 462 20 1 1497 1186 61 0 20 chr11 119590074 119590224 -2253632 + B1_Mus2 SINE Alu 1 147 0 1 1497 180 135 0 0 chr11 119590224 119590261 -2253595 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 1497 508 236 55 0 chr11 119590296 119590406 -2253450 + B3 SINE B2 1 116 -100 1 1497 227 200 0 20 chr11 119590445 119590496 -2253360 + CT-rich Low_complexity Low_complexity 5 54 0 1 1497 356 356 121 26 chr11 119591109 119591317 -2252539 - L1M5 LINE L1 -2196 3950 3740 1 1497 315 0 0 0 chr11 119591317 119591352 -2252504 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1497 356 356 121 26 chr11 119591352 119591483 -2252373 - L1M5 LINE L1 -2407 3739 3580 1 1497 287 182 0 0 chr11 119592646 119592690 -2251166 - ID_B1 SINE B4 -8 216 173 1 1497 262 296 57 0 chr11 119592690 119592734 -2251122 - PB1D7 SINE Alu -8 112 20 1 1497 257 269 26 0 chr11 119592737 119592815 -2251041 - L1MC LINE L1 -727 5617 5538 1 1497 257 281 56 0 chr11 119593094 119593183 -2250673 - L1MC LINE L1 -852 5294 5201 1 1497 387 241 24 0 chr11 119593746 119593829 -2250027 + PB1D10 SINE Alu 24 108 -9 1 1497 459 0 0 0 chr11 119596841 119596892 -2246964 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1497 620 266 123 15 chr11 119597612 119597807 -2246049 + B3 SINE B2 1 216 0 1 1497 237 238 83 53 chr11 119598466 119598599 -2245257 + L1MA5 LINE L1 5889 6025 -275 1 1497 215 301 42 21 chr11 119598766 119598861 -2244995 + RSINE1 SINE B4 25 121 -44 1 1497 345 324 71 6 chr11 119599278 119599461 -2244395 - L1MC4 LINE L1 -1105 6937 6743 1 1497 260 296 125 36 chr11 119601299 119601411 -2242445 + MER20 DNA MER1_type 31 152 -67 1 1497 303 28 0 0 chr11 119602395 119602431 -2241425 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1497 227 274 73 36 chr11 119602595 119602705 -2241151 - PB1D10 SINE Alu -3 114 1 1 1497 198 0 0 0 chr11 119603063 119603085 -2240771 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1497 994 76 45 0 chr11 119603088 119603220 -2240636 - B1_Mus1 SINE Alu -6 142 5 1 1497 23 33 0 0 chr11 119603333 119603363 -2240493 + AT_rich Low_complexity Low_complexity 1 30 0 1 1497 445 283 79 41 chr11 119603861 119604152 -2239704 - L1M5 LINE L1 -1302 4844 4543 1 1497 198 0 0 0 chr11 119605481 119605503 -2238353 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 1497 1022 123 7 7 chr11 119606471 119606618 -2237238 + B1_Mus1 SINE Alu 2 148 0 1 1497 1408 100 0 5 chr11 119607170 119607361 -2236495 - B2_Mm2 SINE B2 -5 190 1 1 1497 375 184 67 33 chr11 119608475 119608565 -2235291 + B1F SINE Alu 52 144 -5 1 1497 431 169 22 78 chr11 119608581 119608596 -2235260 + RSINE1 SINE B4 12 26 -139 1 1497 2813 58 0 3 chr11 119608596 119608943 -2234913 + ORR1A0 LTR MaLR 1 346 0 1 1497 431 169 22 78 chr11 119608943 119609017 -2234839 + RSINE1 SINE B4 27 96 -69 1 1497 882 266 142 33 chr11 119609222 119609587 -2234269 - Lx8 LINE L1 -3 7470 7066 1 1497 315 297 167 25 chr11 119609615 119609777 -2234079 - Lx8 LINE L1 -504 6969 6785 1 1497 294 235 29 0 chr11 119611454 119611522 -2232334 - PB1D7 SINE Alu -31 89 20 1 1497 244 299 186 29 chr11 119612133 119612343 -2231513 - L2 LINE L2 -614 2805 2563 1 1497 264 270 16 0 chr11 119612343 119612406 -2231450 + ID2 SINE ID 2 65 -18 1 1497 1091 25 1 0 chr11 119615537 119615670 -2228186 - B1_Mus2 SINE Alu -101 210 21 1 1497 234 312 13 25 chr11 119616140 119616219 -2227637 + ID4 SINE ID 3 80 -3 1 1497 1017 140 171 0 chr11 119616571 119616764 -2227092 + URR1A DNA MER1_type 1 226 0 1 1497 315 270 0 0 chr11 119616832 119616906 -2226950 - B1F SINE Alu -58 91 18 1 1497 291 337 50 0 chr11 119620164 119620265 -2223591 - MER58A DNA MER1_type -118 106 1 1 1497 1467 176 129 32 chr11 119621289 119621532 -2222324 + ORR1D1 LTR MaLR 1 260 -114 1 1497 1856 138 81 14 chr11 119621532 119621877 -2221979 - RLTR9A LTR ERVK 0 368 1 1 1497 1467 176 129 32 chr11 119621877 119621974 -2221882 + ORR1D1 LTR MaLR 261 374 0 1 1497 501 251 62 39 chr11 119622000 119622178 -2221678 - B3A SINE B2 -15 183 2 1 1497 591 176 99 0 chr11 119622197 119622328 -2221528 - B1_Mur3 SINE Alu -1 148 5 1 1497 210 71 0 0 chr11 119622352 119622380 -2221476 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1497 402 259 0 23 chr11 119622380 119622467 -2221389 + PB1D10 SINE Alu 27 111 -6 1 1497 231 200 18 91 chr11 119622418 119622473 -2221383 + ID_B1 SINE B4 174 224 0 1 1497 252 86 0 0 chr11 119623284 119623319 -2220537 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1497 226 259 19 0 chr11 119624115 119624169 -2219687 - B1F1 SINE Alu -93 56 2 1 1497 287 202 0 12 chr11 119626651 119626736 -2217120 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1497 370 266 46 0 chr11 119628822 119628931 -2214925 - MLT1A0 LTR MaLR -7 358 245 1 1497 186 263 0 0 chr11 119629682 119629777 -2214079 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1497 237 271 0 33 chr11 119629778 119629839 -2214017 - ID4_ SINE ID -20 63 5 1 1497 1250 54 0 0 chr11 119630269 119630416 -2213440 + B1_Mus1 SINE Alu 1 147 -1 1 1497 189 0 0 0 chr11 119630432 119630453 -2213403 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1497 270 219 93 27 chr11 119630471 119630576 -2213280 - MIRm SINE MIR -156 120 5 1 1497 255 175 0 0 chr11 119631964 119632021 -2211835 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1497 192 77 0 0 chr11 119633859 119633885 -2209971 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1497 1020 52 0 0 chr11 119633885 119634019 -2209837 + (TCTCCC)n Simple_repeat Simple_repeat 3 137 0 1 1497 301 274 154 0 chr11 119635680 119635797 -2208059 - B1F SINE Alu -14 135 1 1 1497 784 194 155 6 chr11 119635816 119635997 -2207859 - B3 SINE B2 -6 210 3 1 1497 253 163 0 0 chr11 119637319 119637362 -2206494 - HAL1 LINE L1 -879 1628 1586 1 1497 371 244 46 11 chr11 119637513 119637600 -2206256 - PB1 SINE Alu -4 123 34 2 1497 342 294 19 10 chr11 119637818 119637921 -2205935 - PB1D7 SINE Alu -15 105 2 2 1497 573 179 19 19 chr11 119637945 119637956 -2205900 - B1_Mur3 SINE Alu -1 148 139 2 1497 213 39 0 0 chr11 119637956 119637982 -2205874 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1497 573 179 19 19 chr11 119637982 119638078 -2205778 - B1_Mur3 SINE Alu -11 138 41 2 1497 249 325 55 16 chr11 119638936 119639064 -2204792 - L1MEb LINE L1 -5925 145 13 2 1497 230 212 102 83 chr11 119640066 119640174 -2203682 + RMER19C LTR ERVK 63 172 -439 2 1497 230 212 102 83 chr11 119640438 119640546 -2203310 + RMER19C LTR ERVK 63 172 -439 2 1497 260 254 87 94 chr11 119640903 119641147 -2202709 + RMER19C LTR ERVK 63 269 -342 2 1497 237 65 0 0 chr11 119642965 119642996 -2200860 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1497 696 261 90 56 chr11 119643520 119643788 -2200068 + BGLII_B LTR ERVK 155 431 -10 2 1497 950 207 39 29 chr11 119644477 119644681 -2199175 - B3 SINE B2 -6 210 5 2 1497 828 214 144 181 chr11 119644800 119645327 -2198529 - RMER20B LTR ERVK 0 516 6 2 1497 3343 69 0 0 chr11 119649119 119649526 -2194330 - MTB_Mm LTR MaLR 0 407 1 2 1497 308 337 10 0 chr11 119651573 119651671 -2192185 - L1MEg LINE L1 -4488 1596 1498 2 1497 412 338 155 17 chr11 119652528 119652877 -2190979 - L1M4 LINE L1 -1016 5130 4734 2 1497 1341 80 6 6 chr11 119652913 119653089 -2190767 - B2_Mm2 SINE B2 -18 177 2 2 1497 501 347 65 26 chr11 119653112 119653494 -2190362 - L1MD LINE L1 -1801 4345 3949 2 1497 266 255 252 9 chr11 119654003 119654114 -2189742 + MLT1B LTR MaLR 1 138 -252 2 1497 577 263 88 39 chr11 119655678 119655955 -2187901 - MTE2a LTR MaLR -14 407 1 2 1497 24 0 0 0 chr11 119657520 119657544 -2186312 + GC_rich Low_complexity Low_complexity 1 24 0 2 1497 741 304 49 28 chr11 119660979 119661226 -2182630 + ORR1E LTR MaLR 56 307 -52 2 1497 769 179 60 0 chr11 119661423 119661574 -2182282 + B3 SINE B2 57 216 0 2 1497 854 222 156 0 chr11 119661686 119661866 -2181990 - B3 SINE B2 -8 208 1 2 1497 806 215 0 13 chr11 119661876 119662027 -2181829 - B1_Mur1 SINE Alu 0 149 1 2 1497 852 155 86 6 chr11 119662600 119662775 -2181081 + B2_Mm2 SINE B2 1 189 -6 2 1497 288 231 0 0 chr11 119663026 119663091 -2180765 + B4A SINE B4 1 65 -227 2 1497 225 0 0 0 chr11 119663210 119663235 -2180621 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1497 423 0 0 0 chr11 119663235 119663281 -2180575 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1498 225 0 0 0 chr11 119671311 119671336 -2172520 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1498 324 226 38 2 chr11 119671815 119671905 -2171951 + MTEa LTR MaLR 277 368 -11 2 1498 653 204 14 7 chr11 119673947 119674090 -2169766 - B1_Mus2 SINE Alu -2 145 2 2 1498 332 43 0 21 chr11 119674535 119674582 -2169274 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 2 1498 1367 51 5 0 chr11 119674774 119674987 -2168869 + (CTGTG)n Simple_repeat Simple_repeat 1 214 0 2 1498 274 273 123 72 chr11 119676105 119676243 -2167613 - B1F2 SINE Alu -4 145 1 2 1498 200 241 0 55 chr11 119677263 119677408 -2166448 + (CAGC)n Simple_repeat Simple_repeat 4 140 0 2 1498 253 318 105 8 chr11 119677763 119677896 -2165960 + L2 LINE L2 2117 2262 -1157 2 1498 225 83 0 0 chr11 119677907 119677943 -2165913 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2 1498 287 260 48 48 chr11 119677968 119678073 -2165783 + PB1D7 SINE Alu 13 117 -3 2 1498 27 0 0 0 chr11 119679714 119679741 -2164115 + AT_rich Low_complexity Low_complexity 1 27 0 2 1498 489 34 0 0 chr11 119680971 119681030 -2162826 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1498 1123 68 0 0 chr11 119681039 119681186 -2162670 - B1_Mus1 SINE Alu 0 148 2 2 1498 312 91 0 0 chr11 119681626 119681670 -2162186 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1498 366 238 381 27 chr11 119681678 119681828 -2162028 - B3 SINE B2 -13 203 1 2 1498 1425 42 5 30 chr11 119681878 119682075 -2161781 + B2_Mm1a SINE B2 2 193 0 2 1498 868 209 15 1 chr11 119683492 119683680 -2160176 + Lx2B LINE L1 6683 6909 -67 2 1498 1161 61 0 0 chr11 119684988 119685136 -2158720 + B1_Mus1 SINE Alu 1 148 0 2 1498 1147 136 21 0 chr11 119685919 119686110 -2157746 + URR1A DNA MER1_type 32 226 0 2 1498 234 0 0 0 chr11 119686181 119686207 -2157649 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1498 243 248 226 9 chr11 119686453 119686559 -2157297 - ID_B1 SINE B4 -70 154 26 2 1498 543 256 38 38 chr11 119688460 119688618 -2155238 + B3A SINE B2 37 194 -4 2 1498 1114 89 0 0 chr11 119688632 119688778 -2155078 + B1_Mus2 SINE Alu 2 147 0 2 1498 331 310 86 43 chr11 119689342 119689504 -2154352 + L1MEc LINE L1 1297 1465 -4935 2 1498 2044 138 75 27 chr11 119690013 119690415 -2153441 - MTC LTR MaLR 0 421 1 2 1498 338 204 252 0 chr11 119690577 119690680 -2153176 + B1_Mur2 SINE Alu 1 129 -20 2 1498 340 372 14 35 chr11 119690675 119690817 -2153039 + MTEa LTR MaLR 51 189 -190 2 1498 240 197 214 4 chr11 119690829 119690936 -2152920 + MTEa LTR MaLR 249 379 0 2 1498 254 250 110 46 chr11 119691085 119691194 -2152662 + L1MEc LINE L1 2393 2508 -3892 2 1498 629 301 55 45 chr11 119691550 119691839 -2152017 - B4A SINE B4 0 292 1 2 1498 297 203 12 60 chr11 119692017 119692101 -2151755 - B1_Mur1 SINE Alu 0 149 70 2 1498 623 259 134 25 chr11 119692695 119692933 -2150923 + B4A SINE B4 1 264 -28 2 1498 570 205 8 8 chr11 119692930 119693053 -2150803 + URR1B DNA MER1_type 103 225 0 2 1498 735 253 103 32 chr11 119693118 119693400 -2150456 + MTE2a LTR MaLR 78 379 0 2 1498 946 252 102 32 chr11 119695905 119696249 -2147607 - ORR1D2 LTR MaLR 0 370 3 2 1498 636 244 12 25 chr11 119697157 119697317 -2146539 + RSINE1 SINE B4 4 161 -4 2 1498 584 184 70 0 chr11 119697354 119697468 -2146388 + B1_Mur1 SINE Alu 23 144 -5 2 1498 347 377 53 12 chr11 119697753 119698094 -2145762 + L1M5 LINE L1 4406 4760 -1386 2 1498 183 42 0 0 chr11 119698444 119698468 -2145388 + (CAGG)n Simple_repeat Simple_repeat 4 27 0 2 1498 459 0 0 0 chr11 119698505 119698556 -2145300 + (TCTTG)n Simple_repeat Simple_repeat 3 53 0 2 1498 427 160 0 0 chr11 119698557 119698632 -2145224 - B1_Mm SINE Alu -23 124 50 2 1498 878 171 193 0 chr11 119698806 119698987 -2144869 + B3 SINE B2 1 216 0 2 1498 21 0 0 0 chr11 119699103 119699124 -2144732 + AT_rich Low_complexity Low_complexity 1 21 0 2 1498 905 294 123 12 chr11 119702728 119703062 -2140794 - MTE2b LTR MaLR 0 379 9 2 1498 1261 88 44 6 chr11 119703926 119704108 -2139748 + B2_Mm2 SINE B2 2 190 -5 2 1498 664 235 105 0 chr11 119704506 119704651 -2139205 + B3 SINE B2 1 162 -54 2 1498 453 19 0 0 chr11 119704651 119704705 -2139151 + (CATA)n Simple_repeat Simple_repeat 1 54 0 2 1498 664 235 105 0 chr11 119704705 119704721 -2139135 + B3 SINE B2 163 178 -38 2 1498 477 34 0 0 chr11 119705614 119705673 -2138183 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1498 189 0 0 0 chr11 119706353 119706374 -2137482 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1498 648 0 0 0 chr11 119708617 119708689 -2135167 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1498 8965 112 34 19 chr11 119709584 119710629 -2133227 - Lx4A LINE L1 -10 7048 5973 2 1498 279 0 0 0 chr11 119710629 119710660 -2133196 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1498 1343 67 6 0 chr11 119710660 119710839 -2133017 - B2_Mm2 SINE B2 -15 180 1 2 1498 8965 122 42 16 chr11 119710839 119711571 -2132285 - Lx4A LINE L1 -1086 5972 5210 2 1498 1012 41 0 104 chr11 119711685 119711849 -2132007 + B1_Mus2 SINE Alu 1 147 0 2 1498 189 154 0 0 chr11 119712511 119712550 -2131306 + (AATTG)n Simple_repeat Simple_repeat 2 40 0 2 1498 826 188 189 22 chr11 119713326 119713511 -2130345 - B3 SINE B2 0 216 1 2 1498 281 271 0 14 chr11 119714286 119714357 -2129499 + RSINE1 SINE B4 1 70 -95 2 1498 225 139 0 0 chr11 119714571 119714607 -2129249 + B1_Mus1 SINE Alu 22 57 -91 2 1498 823 140 97 23 chr11 119714715 119714890 -2128966 - B2_Mm2 SINE B2 -6 189 2 2 1498 510 208 39 126 chr11 119714892 119715074 -2128782 + B3A SINE B2 33 198 0 2 1498 1337 69 16 16 chr11 119715099 119715291 -2128565 + B2_Mm1t SINE B2 1 192 -1 2 1498 1010 237 115 33 chr11 119716859 119717164 -2126692 + Lx5 LINE L1 6696 7025 -25 2 1498 186 43 0 0 chr11 119717165 119717188 -2126668 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2 1498 479 43 0 0 chr11 119717832 119717901 -2125955 + L1Md_F3 LINE L1 6502 6570 -14 2 1498 229 324 13 13 chr11 119720095 119720170 -2123686 - MLT1G1 LTR MaLR -150 429 355 2 1498 213 65 0 0 chr11 119720379 119720410 -2123446 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 1498 775 145 0 22 chr11 119720421 119720604 -2123252 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1498 534 202 0 0 chr11 119720618 119721044 -2122812 + (TG)n Simple_repeat Simple_repeat 1 426 0 2 1498 325 122 0 0 chr11 119721084 119721133 -2122723 - HAL1-3A_ME LINE L1 -839 2019 1971 2 1498 1002 229 15 0 chr11 119721164 119721365 -2122491 + B3 SINE B2 9 212 -4 2 1498 534 238 18 59 chr11 119722285 119722455 -2121401 - RSINE1 SINE B4 0 165 3 2 1498 1284 89 0 0 chr11 119722976 119723156 -2120700 + (CCCCCA)n Simple_repeat Simple_repeat 1 180 0 2 1498 245 231 19 0 chr11 119723549 119723601 -2120255 + ID4_ SINE ID 4 56 -27 2 1498 356 289 167 7 chr11 119725518 119725668 -2118188 + B3A SINE B2 4 177 -21 2 1498 346 57 71 0 chr11 119725671 119725741 -2118115 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1498 33 0 0 0 chr11 119725742 119725775 -2118081 + AT_rich Low_complexity Low_complexity 1 33 0 3 1498 515 242 109 0 chr11 119726250 119726378 -2117478 + B1_Mur1 SINE Alu 2 143 -6 3 1498 312 224 0 0 chr11 119726440 119726574 -2117282 + (TG)n Simple_repeat Simple_repeat 1 134 0 3 1498 420 279 93 22 chr11 119726574 119726713 -2117143 - RSINE1 SINE B4 0 165 17 3 1498 218 217 0 0 chr11 119727288 119727334 -2116522 + T-rich Low_complexity Low_complexity 1 46 0 3 1498 1673 31 0 15 chr11 119727354 119727549 -2116307 - B2_Mm1t SINE B2 0 193 2 3 1498 798 46 1 34 chr11 119727552 119727678 -2116178 - B2_Mm1a SINE B2 0 193 1 3 1498 270 0 0 0 chr11 119728767 119728797 -2115059 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1498 248 253 110 44 chr11 119728800 119728891 -2114965 - RSINE1 SINE B4 -20 145 49 3 1498 198 0 0 0 chr11 119729712 119729734 -2114122 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1498 937 231 28 19 chr11 119730350 119730566 -2113290 + ID_B1 SINE B4 3 220 -4 3 1498 441 0 0 0 chr11 119732160 119732209 -2111647 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1498 200 211 17 50 chr11 119732982 119733042 -2110814 + CT-rich Low_complexity Low_complexity 6 63 0 3 1498 236 290 43 0 chr11 119734305 119734374 -2109482 + B1F1 SINE Alu 1 72 -77 3 1498 219 211 35 0 chr11 119735122 119735179 -2108677 - ID4_ SINE ID -22 61 3 3 1498 385 227 23 0 chr11 119735317 119735405 -2108451 + PB1D10 SINE Alu 21 110 -7 3 1498 1106 162 141 0 chr11 119736947 119737145 -2106711 + URR1A DNA MER1_type 1 226 0 3 1498 717 257 99 0 chr11 119737524 119737726 -2106130 - MTE2b LTR MaLR -156 223 2 3 1498 225 0 0 0 chr11 119739113 119739138 -2104718 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1498 862 49 179 8 chr11 119739138 119739261 -2104595 - B1_Mus2 SINE Alu 0 147 4 3 1498 307 309 75 29 chr11 119739424 119739597 -2104259 + L1MCc LINE L1 1268 1448 -4975 3 1498 297 297 55 55 chr11 119739611 119739626 -2104230 + ID_B1 SINE B4 77 222 -2 3 1498 516 225 61 15 chr11 119739626 119739757 -2104099 + B1F SINE Alu 12 148 -1 3 1498 387 263 42 0 chr11 119739834 119739929 -2103927 + RSINE1 SINE B4 2 100 -65 3 1498 1362 93 22 0 chr11 119739939 119740122 -2103734 + B2_Mm2 SINE B2 3 189 -6 3 1498 621 155 25 25 chr11 119740126 119740245 -2103611 + PB1D9 SINE Alu 2 120 0 3 1498 345 300 170 17 chr11 119740245 119740486 -2103370 + L1MCc LINE L1 5309 5586 -1355 3 1498 294 316 0 20 chr11 119740724 119740824 -2103032 + ORR1E LTR MaLR 26 123 -236 3 1498 497 226 19 0 chr11 119740988 119741094 -2102762 - B1F SINE Alu -27 122 15 3 1498 364 292 33 53 chr11 119740990 119741142 -2102714 - ID_B1 SINE B4 -26 198 50 3 1498 236 292 61 20 chr11 119741419 119741517 -2102339 + L1MC LINE L1 3907 4008 -2138 3 1498 445 291 39 41 chr11 119741894 119742157 -2101699 + L1MD LINE L1 4702 4967 -1179 3 1498 2522 124 13 102 chr11 119742300 119742759 -2101097 - MTC LTR MaLR 0 421 4 3 1498 536 90 0 0 chr11 119742759 119742837 -2101019 + B1_Mus2 SINE Alu 70 147 0 3 1498 1162 68 0 7 chr11 119742865 119743013 -2100843 + B1_Mus2 SINE Alu 1 147 0 3 1498 547 271 108 0 chr11 119743050 119743179 -2100677 + RSINE1 SINE B4 23 165 0 3 1498 258 207 0 0 chr11 119743179 119743237 -2100619 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 3 1498 1363 81 40 0 chr11 119743280 119743453 -2100403 + B2_Mm2 SINE B2 1 180 -15 3 1498 801 191 14 7 chr11 119743495 119743643 -2100213 + B1_Mur1 SINE Alu 1 149 0 3 1498 330 214 14 14 chr11 119743674 119743745 -2100111 + PB1D10 SINE Alu 46 116 -1 3 1498 951 9 0 0 chr11 119745381 119745489 -2098367 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 1498 417 184 110 55 chr11 119746064 119746173 -2097683 - PB1D10 SINE Alu -2 115 1 3 1498 1175 75 0 7 chr11 119748566 119748714 -2095142 + B1_Mus2 SINE Alu 1 147 0 3 1498 543 31 0 0 chr11 119748716 119748781 -2095075 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1498 568 63 31 21 chr11 119748778 119748875 -2094981 + (GAAAA)n Simple_repeat Simple_repeat 5 102 0 3 1498 469 286 128 6 chr11 119748982 119749161 -2094695 - B3 SINE B2 -5 211 11 3 1498 548 301 141 1 chr11 119749250 119749624 -2094232 - L1MB3 LINE L1 -2 6181 5739 3 1498 770 304 9 14 chr11 119750464 119750681 -2093175 - ID_B1 SINE B4 -5 219 4 3 1498 265 298 40 0 chr11 119750714 119750804 -2093052 + ID4 SINE ID 2 95 -57 3 1498 1383 86 38 0 chr11 119751600 119751786 -2092070 - B2_Mm2 SINE B2 -2 193 1 3 1498 216 303 12 50 chr11 119754322 119754402 -2089454 - ID4_ SINE ID -6 77 1 3 1498 198 160 0 0 chr11 119758041 119758091 -2085765 + T-rich Low_complexity Low_complexity 1 50 0 3 1498 1270 41 0 0 chr11 119758091 119758238 -2085618 - B1_Mus2 SINE Alu 0 147 1 3 1498 244 252 140 97 chr11 119761419 119761533 -2082323 + MLT1A0 LTR MaLR 7 125 -265 3 1498 1083 61 0 0 chr11 119763385 119763516 -2080340 + B1_Mus2 SINE Alu 1 131 -16 3 1498 275 235 0 56 chr11 119763548 119763620 -2080236 + L1M4 LINE L1 4489 4556 -1590 3 1498 317 278 219 96 chr11 119763635 119763822 -2080034 + B4 SINE B4 83 292 0 3 1498 248 278 165 0 chr11 119763877 119763974 -2079882 + B3A SINE B2 2 114 -84 3 1498 1494 58 26 5 chr11 119764124 119764315 -2079541 - B2_Mm2 SINE B2 0 195 1 3 1498 272 284 96 19 chr11 119764614 119764718 -2079138 + B1F SINE Alu 19 130 -19 3 1498 698 327 76 43 chr11 119764719 119765009 -2078847 + L1M4 LINE L1 5305 5605 -575 3 1498 1413 96 21 0 chr11 119765009 119765197 -2078659 + B2_Mm2 SINE B2 1 192 -3 3 1498 698 327 76 43 chr11 119765197 119765367 -2078489 + L1M4 LINE L1 5606 5780 -400 3 1498 461 324 38 38 chr11 119765388 119765574 -2078282 + MLT1A0 LTR MaLR 160 345 -20 3 1498 341 247 0 13 chr11 119765625 119765703 -2078153 - RSINE1 SINE B4 -81 84 8 3 1498 314 222 106 43 chr11 119765772 119765866 -2077990 - PB1D10 SINE Alu 0 117 18 3 1498 398 236 45 0 chr11 119768162 119768251 -2075605 + B3 SINE B2 71 163 -53 3 1498 635 249 152 71 chr11 119768249 119768603 -2075253 + MLT1C LTR MaLR 16 398 -69 3 1498 347 347 36 15 chr11 119768789 119768985 -2074871 + ERVL-E-int LTR ERVL 330 529 -5138 3 1498 549 241 118 50 chr11 119770035 119770297 -2073559 + B4 SINE B4 3 282 -10 3 1498 461 257 175 19 chr11 119770525 119770731 -2073125 - ORR1E LTR MaLR -120 239 2 3 1498 267 261 91 98 chr11 119770864 119770996 -2072860 + LTR41B LTR ERVL 36 166 -592 3 1498 379 200 43 0 chr11 119771828 119771898 -2071958 + ID4 SINE ID 3 75 -8 3 1498 2365 119 36 60 chr11 119772385 119772707 -2071149 - MTC LTR MaLR -11 410 98 3 1498 1240 48 0 7 chr11 119772707 119772855 -2071001 - B1_Mm SINE Alu 0 147 1 3 1498 2365 119 36 60 chr11 119772855 119772952 -2070904 - MTC LTR MaLR -324 97 1 3 1498 736 65 16 6 chr11 119772951 119773059 -2070797 + B1_Mm SINE Alu 1 144 -3 3 1498 198 0 0 0 chr11 119773059 119773081 -2070775 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 1498 480 18 0 0 chr11 119773087 119773144 -2070712 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1498 372 118 0 0 chr11 119773144 119773212 -2070644 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 1498 740 151 8 1 chr11 119773237 119773377 -2070479 + B1_Mur3 SINE Alu 3 142 -7 3 1498 296 238 20 126 chr11 119773368 119773485 -2070371 - MER58B DNA MER1_type -236 105 1 3 1498 213 158 0 0 chr11 119773742 119773780 -2070076 + PB1D10 SINE Alu 62 99 -18 3 1498 23 0 0 0 chr11 119775165 119775188 -2068668 + GC_rich Low_complexity Low_complexity 1 23 0 3 1498 238 310 87 39 chr11 119781676 119781780 -2062076 - PB1D10 SINE Alu -8 109 1 3 1498 315 179 0 0 chr11 119782153 119782220 -2061636 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1498 274 293 0 0 chr11 119782419 119782477 -2061379 + B4A SINE B4 85 142 -150 3 1498 371 312 21 0 chr11 119782426 119782522 -2061334 + PB1D10 SINE Alu 7 104 -13 3 1498 301 230 150 0 chr11 119782599 119782699 -2061157 - RSINE1 SINE B4 -2 163 49 3 1498 1198 54 0 20 chr11 119782742 119782893 -2060963 - B1_Mus1 SINE Alu 0 148 1 3 1498 261 260 115 80 chr11 119782900 119783013 -2060843 - MLT1A1 LTR MaLR 0 408 292 3 1498 354 214 281 30 chr11 119783104 119783169 -2060687 - Lx8 LINE L1 -438 7035 6971 3 1498 315 0 0 0 chr11 119783169 119783204 -2060652 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1498 354 214 281 30 chr11 119783204 119783302 -2060554 - Lx8 LINE L1 -503 6970 6831 3 1498 2259 84 24 59 chr11 119783743 119784084 -2059772 - ORR1A4 LTR MaLR 0 329 1 3 1498 307 307 182 42 chr11 119784469 119784612 -2059244 + RSINE1 SINE B4 1 163 -2 3 1498 334 317 40 0 chr11 119784624 119784725 -2059131 + ORR1E LTR MaLR 11 115 -244 3 1498 282 234 156 21 chr11 119784760 119784856 -2059000 + ORR1E LTR MaLR 271 379 0 3 1498 246 299 37 9 chr11 119784924 119785032 -2058824 - L1M4 LINE L1 -364 5820 5710 3 1498 1402 105 16 0 chr11 119785094 119785285 -2058571 - B2_Mm2 SINE B2 0 195 2 3 1498 549 68 0 0 chr11 119785388 119785462 -2058394 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1498 505 206 11 0 chr11 119785463 119785555 -2058301 - B3A SINE B2 -47 151 59 3 1498 252 286 66 0 chr11 119785641 119785732 -2058124 + L1M4 LINE L1 5521 5617 -567 3 1498 499 229 57 0 chr11 119785830 119785935 -2057921 + PB1D10 SINE Alu 5 115 -2 3 1498 393 293 70 21 chr11 119786183 119786326 -2057530 + RSINE1 SINE B4 16 165 0 3 1498 279 291 59 17 chr11 119786413 119786532 -2057324 - RMER15 LTR ERVL -86 489 366 3 1498 1190 68 0 0 chr11 119786874 119787021 -2056835 - B1_Mm SINE Alu 0 147 1 3 1498 708 163 70 0 chr11 119787247 119787376 -2056480 + B1_Mur2 SINE Alu 6 143 -6 4 1498 341 342 63 24 chr11 119787532 119787739 -2056117 - B3 SINE B2 0 216 2 4 1498 261 284 50 40 chr11 119787773 119787872 -2055984 - B1F SINE Alu -39 110 11 4 1498 441 281 81 6 chr11 119788166 119788338 -2055518 + B3A SINE B2 10 194 -4 4 1498 1222 61 0 0 chr11 119788755 119788902 -2054954 + B1_Mus1 SINE Alu 2 148 0 4 1498 1015 59 82 0 chr11 119789029 119789164 -2054692 - B1_Mus2 SINE Alu 0 147 2 4 1498 332 236 0 0 chr11 119789243 119789315 -2054541 + B3A SINE B2 3 74 -124 4 1498 942 15 44 0 chr11 119789316 119789452 -2054404 + (CA)n Simple_repeat Simple_repeat 1 142 0 4 1498 373 298 113 60 chr11 119789476 119789626 -2054230 + L1MEf LINE L1 1113 1270 -4930 4 1498 329 250 28 83 chr11 119790147 119790172 -2053684 + B1F SINE Alu 42 66 -83 4 1498 216 0 0 0 chr11 119790172 119790196 -2053660 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1498 939 25 116 0 chr11 119790196 119790317 -2053539 - B1_Mus2 SINE Alu -10 137 3 4 1498 329 250 28 83 chr11 119790317 119790399 -2053457 + B1F SINE Alu 67 143 -6 4 1498 770 103 176 12 chr11 119790400 119790558 -2053298 + B2_Mm1t SINE B2 3 179 -14 4 1498 306 217 58 46 chr11 119790631 119790718 -2053138 + L1MEf LINE L1 1926 2013 -4187 4 1498 566 244 71 22 chr11 119790793 119790977 -2052879 - B3A SINE B2 -5 193 1 4 1498 183 42 0 0 chr11 119791031 119791055 -2052801 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1498 369 243 135 3 chr11 119791056 119791215 -2052641 + ORR1D1-int LTR MaLR 29 216 -1154 4 1498 669 169 16 13 chr11 119791217 119791358 -2052498 - B1_Mur3 SINE Alu 0 149 1 4 1498 3950 208 130 24 chr11 119791372 119792068 -2051788 + ORR1D1-int LTR MaLR 216 986 -384 4 1498 897 71 156 16 chr11 119792068 119792196 -2051660 + B1_Mm SINE Alu 2 147 0 4 1498 3950 208 130 24 chr11 119792196 119792543 -2051313 + ORR1D1-int LTR MaLR 987 1370 0 4 1498 1091 220 50 119 chr11 119792543 119792868 -2050988 + ORR1D1 LTR MaLR 1 304 -70 4 1498 552 205 127 32 chr11 119792868 119792994 -2050862 - B1_Mur2 SINE Alu -10 139 2 4 1498 1091 220 50 119 chr11 119792994 119793070 -2050786 + ORR1D1 LTR MaLR 305 374 0 4 1498 186 143 0 0 chr11 119793080 119793115 -2050741 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1498 500 281 58 21 chr11 119793132 119793321 -2050535 + L1MEg1 LINE L1 2 197 -6038 4 1498 442 236 8 98 chr11 119793399 119793521 -2050335 + PB1D9 SINE Alu 2 112 -8 4 1498 275 273 76 81 chr11 119793595 119793818 -2050038 + L1MEg1 LINE L1 414 635 -5600 4 1498 499 176 147 0 chr11 119794027 119794129 -2049727 + ID_B1 SINE B4 105 221 -3 4 1498 949 188 145 0 chr11 119794131 119794317 -2049539 + B3 SINE B2 1 213 -3 4 1498 801 174 43 0 chr11 119795016 119795154 -2048702 + B1_Mur2 SINE Alu 3 146 -3 4 1498 242 257 86 0 chr11 119795181 119795251 -2048605 + RSINE1 SINE B4 50 125 -40 4 1498 219 36 0 0 chr11 119795412 119795440 -2048416 + (CAGAG)n Simple_repeat Simple_repeat 1 28 0 4 1498 183 80 0 0 chr11 119796147 119796172 -2047684 + (CAT)n Simple_repeat Simple_repeat 3 27 0 4 1498 286 365 51 6 chr11 119796212 119796369 -2047487 + L1M3 LINE L1 5401 5564 -616 4 1498 329 248 122 17 chr11 119796438 119796553 -2047303 + ID_B1 SINE B4 98 224 0 4 1499 583 273 66 0 chr11 119800357 119800555 -2043301 - L1MC3 LINE L1 -87 7698 7488 4 1499 183 42 0 0 chr11 119801343 119801367 -2042489 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4 1499 213 298 17 26 chr11 119803983 119804100 -2039756 + C-rich Low_complexity Low_complexity 2 117 0 4 1499 228 164 16 47 chr11 119804281 119804345 -2039511 + G-rich Low_complexity Low_complexity 4 65 0 4 1499 21 0 0 0 chr11 119804693 119804714 -2039142 + GC_rich Low_complexity Low_complexity 1 21 0 4 1499 723 169 0 8 chr11 119807368 119807493 -2036363 - B1_Mur2 SINE Alu -2 147 24 4 1499 666 65 0 0 chr11 119807524 119807616 -2036240 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1499 435 294 73 0 chr11 119807626 119807762 -2036094 - RSINE1 SINE B4 -17 148 3 4 1499 665 271 6 16 chr11 119807782 119807944 -2035912 - ID_B1 SINE B4 -71 221 64 4 1499 1233 34 7 0 chr11 119808579 119808725 -2035131 - B1_Mus1 SINE Alu 0 148 2 4 1499 473 200 10 21 chr11 119811001 119811098 -2032758 - B1_Mur1 SINE Alu -8 141 46 4 1499 575 218 40 66 chr11 119811211 119811363 -2032493 + B1F SINE Alu 1 148 -1 4 1499 1327 102 11 0 chr11 119811389 119811566 -2032290 - B2_Mm1t SINE B2 -14 179 1 4 1499 256 352 124 31 chr11 119811577 119811803 -2032053 - Kanga1 DNA Tc2 -226 1519 1273 4 1499 720 162 106 15 chr11 119813032 119813164 -2030692 + B1_Mur2 SINE Alu 1 144 -5 4 1499 198 0 0 0 chr11 119813746 119813768 -2030088 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1499 188 250 0 0 chr11 119814591 119814635 -2029221 + L2c LINE L2 3115 3158 -229 4 1499 284 252 32 119 chr11 119814828 119814846 -2029010 + MT2B LTR ERVL 149 155 -446 4 1499 743 210 7 0 chr11 119814846 119814989 -2028867 + B1_Mur1 SINE Alu 1 144 -5 4 1499 273 67 0 62 chr11 119815529 119815593 -2028263 + (TTTTTG)n Simple_repeat Simple_repeat 6 65 0 4 1499 361 160 213 0 chr11 119815593 119815687 -2028169 - B1_Mus2 SINE Alu 0 147 34 4 1499 518 341 86 41 chr11 119819238 119819507 -2024349 + B4A SINE B4 2 282 -10 4 1499 481 260 40 24 chr11 119819551 119819677 -2024179 + B4A SINE B4 3 130 -162 4 1499 301 257 78 19 chr11 119819738 119819841 -2024015 - PB1D7 SINE Alu -4 116 8 4 1499 366 23 0 0 chr11 119821952 119821995 -2021861 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1499 784 191 0 0 chr11 119822437 119822573 -2021283 - B1_Mur3 SINE Alu -13 136 1 4 1499 487 289 27 1 chr11 119822824 119822987 -2020869 - L1M4 LINE L1 -421 5763 5599 4 1499 265 200 133 0 chr11 119823628 119823703 -2020153 - L1M4 LINE L1 -932 5427 5343 4 1499 935 143 0 33 chr11 119823750 119823902 -2019954 + B1_Mus2 SINE Alu 1 147 0 4 1499 219 281 171 0 chr11 119824178 119824260 -2019596 - PB1D10 SINE Alu -20 97 2 4 1499 230 297 31 0 chr11 119824207 119824271 -2019585 - ID_B1 SINE B4 -89 135 70 4 1499 259 312 60 34 chr11 119825145 119825294 -2018562 - L1M5 LINE L1 -383 5857 5705 4 1499 270 0 0 0 chr11 119826111 119826141 -2017715 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 4 1499 274 261 140 11 chr11 119829933 119830026 -2013830 + PB1D10 SINE Alu 13 117 0 4 1499 220 243 350 29 chr11 119830029 119830169 -2013687 + B2_Mm2 SINE B2 2 186 -9 4 1499 396 0 0 0 chr11 119832464 119832508 -2011348 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1499 361 312 0 0 chr11 119833104 119833184 -2010672 - RSINE1 SINE B4 -82 83 4 4 1499 34 0 0 0 chr11 119833478 119833512 -2010344 + AT_rich Low_complexity Low_complexity 1 34 0 4 1499 477 252 42 25 chr11 119833537 119833655 -2010201 - RSINE1 SINE B4 -43 122 3 4 1499 268 161 113 0 chr11 119834146 119834208 -2009648 - RMER10B LTR ERVL 0 398 330 4 1499 220 123 0 34 chr11 119834224 119834236 -2009620 + T-rich Low_complexity Low_complexity 47 58 0 4 1499 1359 94 15 50 chr11 119834236 119834438 -2009418 - B2_Mm2 SINE B2 0 195 1 4 1499 220 123 0 34 chr11 119834438 119834484 -2009372 + T-rich Low_complexity Low_complexity 3 46 0 4 1499 1141 82 7 0 chr11 119834489 119834636 -2009220 - B1_Mus1 SINE Alu 0 148 1 4 1499 365 274 7 14 chr11 119834636 119834784 -2009072 - RMER10B LTR ERVL -58 340 194 4 1499 791 240 18 52 chr11 119834784 119835056 -2008800 - RMER10B LTR ERVL -134 264 2 4 1499 180 0 0 0 chr11 119835722 119835742 -2008114 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1499 1226 54 0 0 chr11 119835742 119835889 -2007967 - B1_Mus2 SINE Alu 0 147 1 4 1499 778 245 27 10 chr11 119835893 119836096 -2007760 + B3 SINE B2 8 212 -4 4 1499 1280 203 148 48 chr11 119836171 119836528 -2007328 + MTC LTR MaLR 29 421 0 4 1499 513 47 0 0 chr11 119836589 119836653 -2007203 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1499 229 320 235 15 chr11 119836666 119836866 -2006990 - MT2A LTR ERVL -138 395 152 4 1499 661 257 0 41 chr11 119836881 119837027 -2006829 + ID_B1 SINE B4 84 223 -1 4 1499 857 225 58 5 chr11 119837821 119838009 -2005847 + B3A SINE B2 1 198 0 4 1499 736 164 21 28 chr11 119838017 119838161 -2005695 + B1_Mus1 SINE Alu 6 148 0 4 1499 27 49 0 0 chr11 119838161 119838202 -2005654 + AT_rich Low_complexity Low_complexity 1 41 0 4 1499 842 238 30 143 chr11 119844532 119844764 -1999092 - B4 SINE B4 0 292 86 4 1499 1331 109 16 0 chr11 119844764 119844956 -1998900 - B2_Mm2 SINE B2 0 195 1 4 1499 842 238 30 143 chr11 119844956 119845052 -1998804 - B4 SINE B4 -207 85 1 4 1499 314 323 62 73 chr11 119845418 119845692 -1998164 - L1MB8 LINE L1 -63 6115 5845 4 1499 244 312 38 0 chr11 119846107 119846187 -1997669 - B1_Mus2 SINE Alu -2 145 63 4 1499 771 158 14 7 chr11 119847094 119847234 -1996622 - B1_Mur4 SINE Alu -1 149 9 4 1499 293 291 49 68 chr11 119847095 119847257 -1996599 - B4A SINE B4 -68 224 66 4 1499 354 80 0 0 chr11 119851769 119851819 -1992037 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1499 22 0 0 0 chr11 119852303 119852325 -1991531 + GC_rich Low_complexity Low_complexity 1 22 0 4 1499 253 209 143 71 chr11 119853153 119853251 -1990605 - RLTR13D3 LTR ERVK 0 1114 1010 4 1499 348 237 69 17 chr11 119853344 119853460 -1990396 - ID_B1 SINE B4 -98 126 5 4 1499 316 298 70 9 chr11 119854430 119854545 -1989311 + B1F2 SINE Alu 2 123 -26 4 1499 273 274 105 38 chr11 119854545 119854560 -1989296 + ID_B1 SINE B4 83 221 -3 4 1499 858 263 100 19 chr11 119854568 119854828 -1989028 + B4A SINE B4 1 281 -11 4 1499 1195 61 0 13 chr11 119855445 119855594 -1988262 - B1_Mus2 SINE Alu 0 147 1 4 1499 195 100 0 0 chr11 119856190 119856220 -1987636 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1499 964 119 8 0 chr11 119857151 119857285 -1986571 - B1_Mus1 SINE Alu -13 135 1 4 1499 207 349 24 0 chr11 119858468 119858594 -1985262 + (TATATG)n Simple_repeat Simple_repeat 6 134 0 5 1499 180 0 0 0 chr11 119862028 119862048 -1981808 + (CCCA)n Simple_repeat Simple_repeat 4 23 0 5 1499 233 140 0 81 chr11 119862761 119862823 -1981033 + A-rich Low_complexity Low_complexity 1 57 0 5 1499 22 0 0 0 chr11 119863857 119863879 -1979977 + AT_rich Low_complexity Low_complexity 1 22 0 5 1499 203 167 0 0 chr11 119868701 119868737 -1975119 + A-rich Low_complexity Low_complexity 3 38 0 5 1499 324 48 0 0 chr11 119869899 119869941 -1973915 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1499 414 0 0 0 chr11 119874468 119874514 -1969342 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1499 1149 75 0 0 chr11 119875265 119875412 -1968444 - B1_Mus2 SINE Alu 0 147 1 5 1499 793 212 14 14 chr11 119876436 119876584 -1967272 - B1_Mur2 SINE Alu -1 148 1 5 1499 1035 211 14 38 chr11 119883041 119883253 -1960603 + B3 SINE B2 1 207 -9 5 1499 618 140 10 0 chr11 119884721 119884821 -1959035 + RLTR18B LTR ERVK 1 101 -411 5 1499 1709 160 116 18 chr11 119884857 119885245 -1958611 + RLTR18-int LTR ERVK 5 430 -4931 5 1499 933 138 0 86 chr11 119886481 119886679 -1957177 + RLTR18-int LTR ERVK 4124 4304 -1057 5 1499 314 71 18 0 chr11 119886697 119886753 -1957103 + Lx5 LINE L1 6992 7048 -2 5 1499 3280 146 35 44 chr11 119886776 119887441 -1956415 + RLTR18-int LTR ERVK 4302 4960 -401 5 1499 1161 173 104 0 chr11 119887521 119887895 -1955961 + RLTR18-int LTR ERVK 4947 5359 -2 5 1499 2501 182 19 64 chr11 119887898 119888427 -1955429 + RLTR18B LTR ERVK 2 506 -6 5 1499 1063 70 0 0 chr11 119888752 119888894 -1954962 + B2_Mm2 SINE B2 7 148 -47 5 1499 1323 0 0 0 chr11 119888894 119889041 -1954815 + (TATATG)n Simple_repeat Simple_repeat 2 148 0 5 1499 219 69 0 0 chr11 119889062 119889091 -1954765 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 5 1499 348 229 0 0 chr11 119889112 119889195 -1954661 + GA-rich Low_complexity Low_complexity 6 88 0 5 1499 445 144 224 10 chr11 119889216 119889314 -1954542 + PB1D9 SINE Alu 2 120 0 5 1499 1438 55 60 0 chr11 119890287 119890470 -1953386 - B2_Mm2 SINE B2 -1 194 1 5 1499 893 133 7 53 chr11 119890507 119890658 -1953198 - B1_Mus2 SINE Alu -1 146 3 5 1499 252 305 20 40 chr11 119890780 119890879 -1952977 + MLT1E2 LTR MaLR 1 97 -530 5 1499 1397 74 26 5 chr11 119892398 119892588 -1951268 + B2_Mm2 SINE B2 1 194 -1 5 1499 1689 31 0 0 chr11 119892643 119892835 -1951021 - B2_Mm1a SINE B2 0 193 2 5 1499 226 299 26 0 chr11 119895166 119895243 -1948613 - ID4 SINE ID -3 80 2 5 1499 213 65 0 0 chr11 119895329 119895360 -1948496 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1499 872 253 21 0 chr11 119895368 119895554 -1948302 + B4A SINE B4 103 292 0 5 1499 239 259 17 0 chr11 119895615 119895673 -1948183 + B1_Mus1 SINE Alu 1 59 -89 5 1499 732 207 15 13 chr11 119895795 119896187 -1947669 + GA-rich Low_complexity Low_complexity 1 392 0 5 1499 2379 104 21 0 chr11 119896849 119897184 -1946672 + ORR1A1 LTR MaLR 5 346 0 5 1499 1364 120 16 0 chr11 119898990 119899181 -1944675 + B2_Mm2 SINE B2 1 194 -1 5 1499 1106 72 0 0 chr11 119899715 119899853 -1944003 + B1_Mus1 SINE Alu 1 138 -10 5 1499 216 0 0 0 chr11 119899853 119899877 -1943979 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1499 200 208 0 20 chr11 119900067 119900116 -1943740 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1499 525 16 0 0 chr11 119900284 119900346 -1943510 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1499 236 263 42 34 chr11 119901684 119901802 -1942054 + L1MB8 LINE L1 6049 6167 -11 5 1499 216 159 68 0 chr11 119901839 119901883 -1941973 + GA-rich Low_complexity Low_complexity 4 50 0 5 1499 215 143 19 58 chr11 119903112 119903164 -1940692 + (CCCCAG)n Simple_repeat Simple_repeat 2 51 0 5 1499 425 328 38 16 chr11 119903952 119904135 -1939721 - MLT1C LTR MaLR -228 239 53 5 1499 1137 133 0 0 chr11 119904317 119904613 -1939243 + (TG)n Simple_repeat Simple_repeat 1 296 0 5 1499 183 222 0 0 chr11 119905554 119905590 -1938266 - MIRc SINE MIR -121 147 112 5 1499 216 183 34 0 chr11 119906370 119906420 -1937436 - MIRb SINE MIR -103 165 108 5 1499 27 0 0 0 chr11 119908436 119908463 -1935393 + GC_rich Low_complexity Low_complexity 1 27 0 5 1499 218 191 0 21 chr11 119908502 119908550 -1935306 + G-rich Low_complexity Low_complexity 3 49 0 5 1499 228 344 104 40 chr11 119910501 119910752 -1933104 + L1MB5 LINE L1 5818 6084 -90 5 1499 542 301 0 0 chr11 119910870 119911006 -1932850 - RSINE1 SINE B4 -20 145 10 5 1499 875 94 8 0 chr11 119911007 119911134 -1932722 - B1_Mur4 SINE Alu -8 142 15 5 1499 1311 83 67 0 chr11 119911221 119911401 -1932455 - B2_Mm2 SINE B2 -2 193 2 5 1499 438 20 0 0 chr11 119912119 119912170 -1931686 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1499 225 337 50 61 chr11 119913230 119913253 -1930603 - YREP_Mm Unknown Unknown -1472 340 222 5 1499 630 284 0 0 chr11 119913253 119913401 -1930455 + B1F2 SINE Alu 2 149 0 5 1499 254 168 4 0 chr11 119913418 119913466 -1930390 + B4 SINE B4 8 56 -168 5 1499 637 348 45 3 chr11 119913554 119913909 -1929947 - L1MB5 LINE L1 -10 6164 5795 5 1499 401 133 13 0 chr11 119913930 119914005 -1929851 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1499 426 211 0 0 chr11 119914094 119914198 -1929658 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 1499 362 281 51 76 chr11 119914406 119914564 -1929292 + B4 SINE B4 69 222 -70 5 1499 826 104 22 7 chr11 119914431 119914566 -1929290 + B1_Mus2 SINE Alu 10 146 -1 5 1499 21 0 0 0 chr11 119914683 119914704 -1929152 + AT_rich Low_complexity Low_complexity 1 21 0 5 1499 228 35 0 0 chr11 119914706 119914735 -1929121 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1499 1101 66 7 0 chr11 119914735 119914871 -1928985 - B1_Mus1 SINE Alu -10 138 2 5 1499 1159 55 7 14 chr11 119914888 119915036 -1928820 + B1_Mus1 SINE Alu 1 147 -1 5 1499 1387 62 23 0 chr11 119915039 119915215 -1928641 - B2_Mm2 SINE B2 -14 181 2 5 1499 610 311 105 23 chr11 119915300 119915479 -1928377 + L1MB3 LINE L1 5294 5485 -698 5 1499 204 67 0 0 chr11 119915479 119915509 -1928347 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1499 610 305 106 18 chr11 119915509 119915824 -1928032 + L1MB3 LINE L1 5486 5823 -360 5 1499 452 196 122 0 chr11 119915828 119915935 -1927921 + BC1_Mm scRNA scRNA 1 120 -32 5 1499 606 250 85 111 chr11 119915954 119916143 -1927713 + B3A SINE B2 5 188 -7 5 1499 410 320 39 67 chr11 119916143 119916351 -1927505 + L1MB3 LINE L1 5828 6029 -154 5 1499 322 269 31 70 chr11 119916411 119916539 -1927317 - MTE2b LTR MaLR -11 368 246 5 1499 1064 65 43 0 chr11 119916614 119916752 -1927104 + B1_Mus1 SINE Alu 5 148 0 5 1499 186 43 0 0 chr11 119916761 119916784 -1927072 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1499 3174 137 58 9 chr11 119919075 119919627 -1924229 - RMER4B LTR ERVK -6 579 1 5 1499 801 147 96 0 chr11 119921472 119921608 -1922248 + B1_Mur4 SINE Alu 1 149 -1 5 1499 242 253 125 11 chr11 119922207 119922295 -1921561 + L2 LINE L2 2242 2339 -1080 5 1499 329 235 0 120 chr11 119922822 119922914 -1920942 + PB1D10 SINE Alu 8 88 -29 5 1499 858 182 119 22 chr11 119922918 119923103 -1920753 + B3 SINE B2 14 216 0 5 1499 325 338 64 0 chr11 119923394 119923551 -1920305 + L1M5 LINE L1 2440 2606 -3540 5 1499 334 354 13 58 chr11 119923765 119923921 -1919935 - B4A SINE B4 -40 252 104 5 1499 390 276 39 128 chr11 119923986 119924091 -1919765 - RSINE1 SINE B4 0 165 81 5 1499 2230 155 83 18 chr11 119924091 119924486 -1919370 + MTC LTR MaLR 1 421 0 5 1499 390 276 39 128 chr11 119924486 119924559 -1919297 - RSINE1 SINE B4 -85 80 3 5 1499 597 242 0 17 chr11 119925139 119925266 -1918590 + B3 SINE B2 53 177 -39 5 1499 456 19 0 0 chr11 119925266 119925319 -1918537 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1499 207 0 0 0 chr11 119925319 119925341 -1918515 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1499 276 299 42 112 chr11 119925341 119925355 -1918501 + B2_Mm2 SINE B2 173 184 -11 5 1499 384 119 0 0 chr11 119925369 119925428 -1918428 + (GGA)n Simple_repeat Simple_repeat 3 61 0 5 1500 414 85 0 0 chr11 119931340 119931399 -1912457 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1500 231 206 123 85 chr11 119931442 119931548 -1912308 + MT2B LTR ERVL 155 264 -337 5 1500 494 145 0 24 chr11 119931468 119931553 -1912303 + B1_Mur4 SINE Alu 38 120 -30 5 1500 724 189 20 20 chr11 119935599 119935745 -1908111 - B1_Mur2 SINE Alu -1 148 3 5 1500 555 295 8 9 chr11 119935752 119935905 -1907951 - ID_B1 SINE B4 -69 223 73 5 1500 488 304 0 23 chr11 119936529 119936717 -1907139 - L1MB7 LINE L1 -1 6183 5997 5 1500 351 0 0 0 chr11 119938503 119938542 -1905314 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 5 1500 953 229 25 0 chr11 119938874 119939075 -1904781 + B3 SINE B2 1 206 -10 5 1500 439 250 33 0 chr11 119939461 119939581 -1904275 + L1MB5 LINE L1 5852 5975 -199 5 1500 281 257 0 67 chr11 119939671 119939746 -1904110 + ID4_ SINE ID 10 79 -4 5 1500 769 19 19 0 chr11 119940519 119940622 -1903234 + IAPEY3-int LTR ERVK 7576 7680 0 5 1500 1978 53 4 15 chr11 119940622 119940888 -1902968 + IAPEY2_LTR LTR ERVK 1 263 -94 5 1500 378 317 45 52 chr11 119940925 119941241 -1902615 + MTE2a-int LTR MaLR 707 1066 -514 5 1500 500 299 17 48 chr11 119941324 119941540 -1902316 + MTE2a-int LTR MaLR 1420 1579 -1 5 1500 876 268 144 40 chr11 119941552 119941879 -1901977 + MTE2a LTR MaLR 19 379 0 5 1500 364 165 22 0 chr11 119941971 119942062 -1901794 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 1500 1211 55 7 0 chr11 119943090 119943235 -1900621 - B1_Mus2 SINE Alu -1 146 1 5 1500 1164 89 12 6 chr11 119944543 119944713 -1899143 + B2_Mm2 SINE B2 1 171 -24 5 1500 632 275 21 0 chr11 119945358 119945500 -1898356 + ID_B1 SINE B4 59 203 -21 5 1500 767 284 5 10 chr11 119945513 119945705 -1898151 + B3A SINE B2 6 196 -2 5 1500 673 184 0 90 chr11 119945705 119945860 -1897996 - B1_Mur4 SINE Alu -1 149 9 5 1500 994 79 21 14 chr11 119945971 119946113 -1897743 + B1_Mus1 SINE Alu 5 147 -1 5 1500 1195 47 0 26 chr11 119946114 119946266 -1897590 + B1_Mus1 SINE Alu 1 148 0 5 1500 570 86 0 0 chr11 119948610 119948691 -1895165 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1500 221 309 0 3 chr11 119948698 119948758 -1895098 - ID4_ SINE ID -16 67 9 6 1500 542 255 7 66 chr11 119948760 119948911 -1894945 - ID_B1 SINE B4 -3 221 80 6 1500 471 229 64 29 chr11 119948913 119949050 -1894806 - B3 SINE B2 -2 191 40 6 1500 1049 110 20 0 chr11 119949080 119949226 -1894630 - B1_Mur4 SINE Alu 0 150 2 6 1500 980 67 8 0 chr11 119949293 119949427 -1894429 - B1_Mur4 SINE Alu 0 150 16 6 1500 512 200 54 88 chr11 119949295 119949443 -1894413 - B4 SINE B4 -69 223 81 6 1500 1065 84 45 0 chr11 119949990 119950145 -1893711 - B2_Mm2 SINE B2 -33 162 1 6 1500 231 36 0 0 chr11 119950325 119950353 -1893503 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1500 561 313 13 13 chr11 119950354 119950503 -1893353 - RSINE1 SINE B4 -16 149 1 6 1500 627 212 30 22 chr11 119950622 119950757 -1893099 - B1F2 SINE Alu -4 145 10 6 1500 320 286 82 25 chr11 119950663 119950785 -1893071 - B4 SINE B4 -96 196 68 6 1500 261 258 129 40 chr11 119950795 119950896 -1892960 - L1M5 LINE L1 -1161 4985 4876 6 1500 261 83 0 0 chr11 119951617 119951653 -1892203 + (TAA)n Simple_repeat Simple_repeat 3 38 0 6 1500 974 104 65 0 chr11 119951653 119951807 -1892049 + B2_Mm2 SINE B2 1 164 -31 6 1500 811 169 29 0 chr11 119953658 119953794 -1890062 + B1_Mur1 SINE Alu 2 141 -8 6 1500 240 35 0 0 chr11 119953797 119953826 -1890030 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1500 469 202 148 31 chr11 119956446 119956472 -1887384 - B1_Mus2 SINE Alu 0 147 117 6 1500 267 31 0 0 chr11 119956472 119956504 -1887352 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1500 469 202 148 31 chr11 119956504 119956605 -1887251 - B1_Mus2 SINE Alu -31 116 6 6 1500 1276 40 0 0 chr11 119958547 119958695 -1885161 + B1_Mus1 SINE Alu 1 148 0 6 1500 228 283 136 61 chr11 119959540 119959687 -1884169 + MER67B LTR ERV1 56 213 -448 6 1500 878 116 20 46 chr11 119961827 119961980 -1881876 + B1_Mur3 SINE Alu 1 149 0 6 1500 1003 193 70 15 chr11 119962023 119962223 -1881633 + B3 SINE B2 2 212 -4 6 1500 835 214 102 5 chr11 119962790 119962987 -1880869 - B3 SINE B2 0 216 1 6 1500 1236 61 0 0 chr11 119963197 119963344 -1880512 + B1_Mus2 SINE Alu 1 147 0 6 1500 360 286 33 0 chr11 119963681 119963772 -1880084 + ORR1E LTR MaLR 27 120 -239 6 1500 310 297 40 0 chr11 119964058 119964159 -1879697 - MLT1A0 LTR MaLR -4 361 257 6 1500 733 176 0 69 chr11 119964347 119964506 -1879350 - B1_Mur4 SINE Alu -2 148 1 6 1500 588 171 57 9 chr11 119964799 119964905 -1878951 - PB1D9 SINE Alu -9 111 1 6 1500 278 268 43 128 chr11 119965123 119965264 -1878592 + B3 SINE B2 75 203 -13 6 1500 628 290 59 5 chr11 119967448 119967635 -1876221 + B3A SINE B2 2 198 0 6 1500 365 220 80 27 chr11 119968800 119968912 -1874944 + B1_Mur1 SINE Alu 5 122 -27 6 1500 458 271 181 26 chr11 119972812 119973005 -1870851 + ID_B1 SINE B4 2 224 0 6 1500 592 319 16 11 chr11 119973088 119973272 -1870584 + B3 SINE B2 11 195 -21 6 1500 417 184 58 12 chr11 119973279 119973394 -1870462 - B1_Mus1 SINE Alu -1 116 1 6 1500 332 247 21 63 chr11 119973302 119973397 -1870459 - MT2B LTR ERVL -351 250 160 6 1500 203 248 19 47 chr11 119975741 119975847 -1868009 + (CAGTA)n Simple_repeat Simple_repeat 2 104 0 6 1500 217 286 0 60 chr11 119976020 119976169 -1867687 + (CAGTA)n Simple_repeat Simple_repeat 2 141 0 6 1500 480 211 73 9 chr11 119978444 119978554 -1865302 - PB1D10 SINE Alu 0 117 1 6 1500 824 160 27 20 chr11 119980333 119980480 -1863376 + B1_Mur3 SINE Alu 2 149 0 6 1500 556 269 208 6 chr11 119982712 119982880 -1860976 + ID_B1 SINE B4 14 215 -9 6 1500 415 256 0 0 chr11 119982992 119983082 -1860774 - B3 SINE B2 -125 91 2 6 1500 521 257 257 23 chr11 119983106 119983281 -1860575 - B3 SINE B2 0 216 1 6 1500 365 227 0 0 chr11 119984010 119984085 -1859771 - Tigger5 DNA MER2_type 0 2406 2332 6 1500 1098 268 79 52 chr11 119984090 119984456 -1859400 - MTE2b LTR MaLR -1 378 3 6 1500 867 175 21 0 chr11 119984473 119984616 -1859240 - B1_Mur4 SINE Alu 0 150 5 6 1500 274 274 23 35 chr11 119984849 119984909 -1858947 + B4 SINE B4 2 61 -231 6 1500 281 68 0 22 chr11 119984909 119984954 -1858902 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1500 274 274 23 35 chr11 119984954 119984980 -1858876 + B4 SINE B4 62 87 -205 6 1500 521 182 221 8 chr11 119984984 119985106 -1858750 + B1_Mur2 SINE Alu 1 148 -1 6 1500 183 114 0 0 chr11 119985108 119985143 -1858713 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1500 788 176 88 0 chr11 119985146 119985282 -1858574 + B1_Mus1 SINE Alu 1 148 0 6 1500 844 254 202 19 chr11 119985416 119985733 -1858123 - MTE2b LTR MaLR -4 375 1 6 1500 283 356 98 87 chr11 119986139 119986486 -1857370 + ORR1E LTR MaLR 1 351 -8 6 1500 576 238 141 12 chr11 119986539 119986691 -1857165 + B3A SINE B2 1 175 -23 6 1500 495 48 0 0 chr11 119986691 119986753 -1857103 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 1500 576 238 141 12 chr11 119986753 119986770 -1857086 + B3A SINE B2 176 192 -6 6 1500 276 235 54 78 chr11 119987174 119987303 -1856553 + L1M5 LINE L1 5055 5180 -966 6 1500 284 239 45 16 chr11 119987427 119987518 -1856338 + B3 SINE B2 103 194 -4 6 1500 478 274 103 0 chr11 119987527 119987673 -1856183 + RSINE1 SINE B4 2 162 -3 6 1500 303 299 140 28 chr11 119987715 119987730 -1856126 + L1MD LINE L1 3081 3095 -3051 6 1500 1187 82 0 0 chr11 119987730 119987877 -1855979 + B1_Mus2 SINE Alu 1 147 0 6 1500 303 299 140 28 chr11 119987877 119987920 -1855936 + L1MD LINE L1 3096 3144 -3002 6 1500 846 78 124 0 chr11 119987920 119988049 -1855807 + B1_Mus1 SINE Alu 4 148 0 6 1500 303 299 140 28 chr11 119988049 119988168 -1855688 + L1MD LINE L1 3145 3278 -2868 6 1500 819 155 35 21 chr11 119988178 119988323 -1855533 + B1_Mur4 SINE Alu 3 149 -1 6 1500 592 263 117 26 chr11 119988623 119988878 -1854978 - B4A SINE B4 -9 283 8 6 1500 213 121 0 0 chr11 119989988 119990021 -1853835 + (TCC)n Simple_repeat Simple_repeat 2 34 0 6 1500 535 192 19 9 chr11 119991816 119991921 -1851935 - PB1D9 SINE Alu -6 114 9 6 1500 288 247 0 110 chr11 119991847 119991938 -1851918 - MT2B LTR ERVL -364 237 157 6 1500 364 264 85 6 chr11 119991992 119992099 -1851757 + B1_Mur1 SINE Alu 28 136 -13 6 1500 1182 68 7 0 chr11 119992099 119992245 -1851611 - B1_Mus1 SINE Alu 0 148 2 6 1500 270 322 8 97 chr11 119992245 119992271 -1851585 + B1_Mur4 SINE Alu 125 150 0 6 1500 195 42 0 0 chr11 119992962 119992986 -1850870 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1500 281 161 32 0 chr11 119993331 119993393 -1850463 + GA-rich Low_complexity Low_complexity 3 66 0 6 1500 361 333 42 28 chr11 119993425 119993567 -1850289 + RSINE1 SINE B4 2 145 -20 6 1500 457 269 19 0 chr11 119993636 119993744 -1850112 + PB1D10 SINE Alu 3 112 -5 6 1500 274 299 13 13 chr11 119993775 119993853 -1850003 + RSINE1 SINE B4 3 80 -85 6 1500 405 0 0 0 chr11 119993856 119993901 -1849955 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1500 369 109 0 0 chr11 119994238 119994293 -1849563 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 1500 198 0 0 0 chr11 119994490 119994512 -1849344 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1500 1113 78 0 0 chr11 119994515 119994656 -1849200 - B1_Mus2 SINE Alu -6 141 1 6 1500 524 214 0 18 chr11 119994700 119994814 -1849042 + PB1D10 SINE Alu 6 117 0 6 1500 258 190 34 17 chr11 119995000 119995059 -1848797 - B4 SINE B4 -217 75 16 6 1500 442 242 108 0 chr11 119995104 119995224 -1848632 + B1F SINE Alu 4 136 -13 6 1500 278 50 0 24 chr11 119995224 119995265 -1848591 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 6 1500 874 163 7 0 chr11 119995303 119995438 -1848418 + B1_Mus1 SINE Alu 1 136 -12 6 1500 584 262 0 57 chr11 119995675 119995833 -1848023 + B1F2 SINE Alu 1 149 0 6 1500 234 0 0 0 chr11 119996447 119996473 -1847383 + (CTGTG)n Simple_repeat Simple_repeat 5 30 0 6 1500 306 0 0 0 chr11 119997032 119997066 -1846790 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1500 1017 77 34 40 chr11 119997171 119997319 -1846537 + B1_Mus1 SINE Alu 1 147 -1 6 1500 198 0 0 0 chr11 119997329 119997351 -1846505 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1500 186 43 0 0 chr11 120001727 120001750 -1842106 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1500 578 59 0 23 chr11 120002574 120002661 -1841195 + Lx2B LINE L1 6916 7000 0 2 1500 1276 20 0 7 chr11 120003010 120003157 -1840699 + B1_Mus2 SINE Alu 2 147 0 3 1500 198 0 0 0 chr11 120004206 120004228 -1839628 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1500 693 164 3 17 chr11 120004509 120004652 -1839204 + B1_Mus1 SINE Alu 1 138 -11 5 1500 1232 221 101 15 chr11 120005486 120005812 -1838044 + MTD LTR MaLR 59 412 -7 6 1500 23 0 0 0 chr11 120005854 120005877 -1837979 + AT_rich Low_complexity Low_complexity 1 23 0 7 1500 763 149 7 14 chr11 120008186 120008325 -1835531 - B1_Mur4 SINE Alu -8 142 11 8 1500 535 212 50 8 chr11 120008375 120008494 -1835362 + B1_Mur1 SINE Alu 24 147 -2 9 1500 410 291 69 69 chr11 120008563 120008722 -1835134 - RSINE1 SINE B4 -4 161 3 1 1500 535 264 20 41 chr11 120008725 120008871 -1834985 - ID_B1 SINE B4 0 224 82 1 1500 328 314 126 10 chr11 120009470 120009676 -1834180 + L1MC2 LINE L1 5587 5816 -1969 1 1500 440 351 28 28 chr11 120009783 120009962 -1833894 + L1ME1 LINE L1 5983 6161 -18 1 1500 665 169 15 46 chr11 120009994 120010145 -1833711 + B1_Mur1 SINE Alu 3 148 -1 1 1500 477 0 0 0 chr11 120010150 120010203 -1833653 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1500 258 213 90 39 chr11 120010334 120010412 -1833444 + L1MC2 LINE L1 6243 6324 -20 1 1500 387 0 0 0 chr11 120010505 120010548 -1833308 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1500 290 231 15 114 chr11 120013584 120013600 -1830256 + MT2B LTR ERVL 139 153 -448 1 1500 497 16 0 16 chr11 120013600 120013663 -1830193 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1500 290 231 15 114 chr11 120013663 120013778 -1830078 + MT2B LTR ERVL 154 257 -344 1 1500 794 158 7 7 chr11 120013683 120013823 -1830033 + B1_Mur4 SINE Alu 11 150 0 1 1500 1274 58 116 0 chr11 120013857 120014029 -1829827 + B2_Mm2 SINE B2 2 193 -2 2 1500 1017 127 0 18 chr11 120014138 120014306 -1829550 + B2_Mm2 SINE B2 7 171 -24 2 1500 898 221 93 0 chr11 120014800 120015004 -1828852 + ID_B1 SINE B4 2 224 0 2 1500 219 36 0 0 chr11 120015037 120015065 -1828791 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1500 1735 16 0 0 chr11 120015065 120015257 -1828599 - B2_Mm1a SINE B2 0 193 2 2 1500 1210 74 28 6 chr11 120015259 120015436 -1828420 - B2_Mm2 SINE B2 -3 192 12 2 1500 671 57 0 0 chr11 120015427 120015515 -1828341 - B2_Mm2 SINE B2 -106 89 2 2 1500 295 219 31 0 chr11 120015735 120015799 -1828057 + ID4 SINE ID 13 78 -5 2 1500 589 284 32 0 chr11 120015852 120016007 -1827849 - MER58A DNA MER1_type -50 174 15 2 1500 375 298 209 0 chr11 120016020 120016235 -1827621 - L1MD LINE L1 -2478 5517 5258 2 1500 303 289 11 0 chr11 120016336 120016426 -1827430 + B4A SINE B4 1 91 -201 3 1500 3434 36 55 7 chr11 120016492 120016908 -1826948 + RLTR10C LTR ERVK 1 436 0 3 1500 294 248 92 69 chr11 120017053 120017102 -1826754 - MLT1E3 LTR MaLR -138 486 438 3 1500 2643 61 3 35 chr11 120017102 120017153 -1826703 - ORR1A2 LTR MaLR 0 327 287 3 1500 1634 22 22 0 chr11 120017153 120017338 -1826518 - B2_Mm1a SINE B2 -4 189 1 3 1500 2643 61 3 35 chr11 120017338 120017624 -1826232 - ORR1A2 LTR MaLR -41 286 1 3 1500 294 256 69 100 chr11 120017624 120017740 -1826116 - MLT1E3 LTR MaLR -187 437 250 3 1500 421 272 58 58 chr11 120018113 120018285 -1825571 + MLT1C LTR MaLR 11 182 -285 3 1500 642 242 29 39 chr11 120018281 120018359 -1825497 + B4A SINE B4 41 118 -174 3 1500 228 35 0 0 chr11 120018359 120018388 -1825468 + (C)n Simple_repeat Simple_repeat 1 29 0 3 1500 642 242 29 39 chr11 120018388 120018515 -1825341 + B4A SINE B4 119 244 -48 3 1500 964 201 45 0 chr11 120018507 120018706 -1825150 + B3 SINE B2 6 213 -3 3 1500 230 234 60 83 chr11 120018738 120018750 -1825106 + RSINE1 SINE B4 83 91 -74 3 1500 1314 88 0 27 chr11 120018750 120018936 -1824920 - B2_Mm2 SINE B2 -12 183 3 4 1500 301 234 60 83 chr11 120018936 120019007 -1824849 + B4 SINE B4 237 291 -1 3 1500 35 0 0 0 chr11 120019007 120019042 -1824814 + AT_rich Low_complexity Low_complexity 1 35 0 4 1500 285 327 38 9 chr11 120019042 120019147 -1824709 + B4A SINE B4 2 109 -183 4 1500 856 182 7 0 chr11 120019601 120019749 -1824107 + B1_Mur4 SINE Alu 1 149 -1 4 1500 363 194 0 30 chr11 120019749 120019850 -1824006 + GA-rich Low_complexity Low_complexity 2 99 0 4 1500 241 318 0 15 chr11 120022321 120022388 -1821468 - ID4_ SINE ID -17 66 1 4 1500 409 228 162 26 chr11 120023566 120023646 -1820210 + ID_B1 SINE B4 81 176 -48 4 1500 1545 27 16 26 chr11 120023646 120023836 -1820020 + B2_Mm2 SINE B2 2 189 -6 4 1500 409 228 162 26 chr11 120023836 120023872 -1819984 + ID_B1 SINE B4 177 212 -12 4 1500 993 102 13 4 chr11 120023878 120024109 -1819747 + (TTCC)n Simple_repeat Simple_repeat 1 233 0 4 1500 485 234 9 27 chr11 120024109 120024122 -1819734 - B1_Mur2 SINE Alu 0 149 137 4 1500 216 0 0 0 chr11 120024122 120024146 -1819710 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1500 485 234 9 27 chr11 120024146 120024242 -1819614 - B1_Mur2 SINE Alu -13 136 42 4 1500 280 189 0 6 chr11 120024285 120024342 -1819514 - B1_Mus2 SINE Alu -91 58 4 5 1500 689 282 11 22 chr11 120024607 120024788 -1819068 + B3A SINE B2 3 181 -17 5 1500 300 111 0 0 chr11 120024804 120024849 -1819007 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1500 864 162 42 0 chr11 120024865 120025007 -1818849 + B1_Mus1 SINE Alu 1 148 0 5 1500 441 240 0 37 chr11 120025320 120025428 -1818428 + PB1D10 SINE Alu 9 112 -5 5 1500 378 0 0 0 chr11 120027737 120027779 -1816077 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1500 28 0 0 0 chr11 120029720 120029748 -1814108 + AT_rich Low_complexity Low_complexity 1 28 0 5 1500 306 271 8 106 chr11 120030025 120030157 -1813699 - ID_B1 SINE B4 -8 216 98 5 1500 587 189 41 8 chr11 120032387 120032510 -1811346 - B1F1 SINE Alu -16 133 7 5 1500 339 25 0 0 chr11 120033151 120033191 -1810665 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 6 1500 737 142 337 0 chr11 120034070 120034239 -1809617 - URR1A DNA MER1_type 0 226 1 6 1500 890 261 0 21 chr11 120034240 120034432 -1809424 + B3A SINE B2 4 191 -7 6 1500 370 297 11 0 chr11 120035242 120035333 -1808523 - ID_B1 SINE B4 -48 176 85 6 1500 380 179 0 8 chr11 120035400 120035518 -1808338 + CT-rich Low_complexity Low_complexity 1 117 0 6 1500 795 139 90 0 chr11 120035523 120035645 -1808211 - B1_Mur4 SINE Alu -17 133 1 6 1500 357 133 0 0 chr11 120035668 120035743 -1808113 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1500 310 294 211 17 chr11 120035745 120035977 -1807879 - L1MB4 LINE L1 -115 6065 5789 6 1500 627 224 191 6 chr11 120035998 120036155 -1807701 - B3A SINE B2 -10 188 3 6 1500 368 323 17 12 chr11 120036162 120036341 -1807515 - L1MB2 LINE L1 -341 5830 5619 6 1500 240 222 146 100 chr11 120036650 120036780 -1807076 + MIRb SINE MIR 124 259 -9 7 1500 384 222 25 0 chr11 120036852 120036933 -1806923 - B1_Mur2 SINE Alu 0 149 67 7 1500 404 158 13 26 chr11 120036942 120037020 -1806836 + B3A SINE B2 3 79 -119 7 1500 292 175 58 70 chr11 120037638 120037724 -1806132 + MIR SINE MIR 47 131 -77 7 1500 822 267 13 43 chr11 120038331 120038566 -1805290 + B4A SINE B4 4 231 -61 7 1500 580 164 73 8 chr11 120038575 120038698 -1805158 + B1_Mus1 SINE Alu 6 136 -12 7 1500 710 181 7 15 chr11 120038809 120038938 -1804918 + B3A SINE B2 2 130 -68 7 1500 735 12 0 0 chr11 120038938 120039022 -1804834 + (TTC)n Simple_repeat Simple_repeat 2 85 0 7 1500 444 183 39 19 chr11 120039118 120039274 -1804582 + (CATATA)n Simple_repeat Simple_repeat 3 161 0 7 1500 238 267 0 148 chr11 120039277 120039365 -1804491 + B4A SINE B4 218 292 0 7 1500 408 122 0 0 chr11 120039561 120039643 -1804213 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 1500 474 220 37 0 chr11 120039651 120039760 -1804096 - B1_Mur4 SINE Alu -33 117 5 8 1500 925 158 20 0 chr11 120040532 120040678 -1803178 + B1_Mur4 SINE Alu 2 150 0 8 1500 236 261 46 0 chr11 120040694 120040759 -1803097 + Tigger5 DNA MER2_type 39 106 -2300 8 1500 585 147 52 52 chr11 120040790 120040905 -1802951 + B3A SINE B2 2 116 -82 8 1500 432 0 0 0 chr11 120041243 120041291 -1802565 + (CAAGA)n Simple_repeat Simple_repeat 5 52 0 8 1500 633 241 57 0 chr11 120041741 120041882 -1801974 + B3A SINE B2 1 149 -49 8 1500 329 0 24 0 chr11 120041882 120041923 -1801933 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1500 929 136 0 52 chr11 120041963 120042118 -1801738 - B1_Mur4 SINE Alu -2 148 2 8 1500 264 19 56 19 chr11 120042126 120042180 -1801676 - B2_Mm2 SINE B2 -3 192 137 8 1500 1400 79 17 0 chr11 120042251 120042429 -1801427 - B2_Mm2 SINE B2 -14 181 1 8 1500 191 213 269 0 chr11 120042522 120042589 -1801267 + MIRm SINE MIR 43 127 -149 9 1500 366 61 0 0 chr11 120043110 120043159 -1800697 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 9 1500 735 12 0 0 chr11 120044465 120044549 -1799307 + (TC)n Simple_repeat Simple_repeat 1 84 0 9 1500 21 36 0 0 chr11 120047663 120047691 -1796165 + AT_rich Low_complexity Low_complexity 1 28 0 9 1500 372 205 0 25 chr11 120053123 120053203 -1790653 + B3A SINE B2 3 80 -118 9 1500 603 83 259 0 chr11 120053203 120053311 -1790545 - B2_Mm2 SINE B2 -35 160 25 9 1500 400 241 0 12 chr11 120053314 120053394 -1790462 + B3 SINE B2 67 145 -71 9 1500 869 79 8 0 chr11 120053570 120053696 -1790160 - B1_Mus2 SINE Alu 0 147 21 9 1500 336 279 103 75 chr11 120053572 120053596 -1790260 - B4A SINE B4 -68 224 152 9 1500 385 191 25 110 chr11 120053596 120053714 -1790142 - MT2B LTR ERVL -323 278 171 9 1500 336 279 103 75 chr11 120053714 120053746 -1790110 - B4A SINE B4 -68 151 46 9 1500 633 284 13 26 chr11 120054340 120054492 -1789364 + RSINE1 SINE B4 8 157 -8 9 1500 261 0 0 0 chr11 120054505 120054534 -1789322 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1500 387 267 33 0 chr11 120055190 120055280 -1788576 + B1F SINE Alu 34 126 -23 1 1500 261 363 100 25 chr11 120055838 120056157 -1787699 + HAL1 LINE L1 1388 1730 -777 1 1500 220 333 29 48 chr11 120056347 120056360 -1787496 + ID_B1 SINE B4 77 178 -46 1 1500 431 191 11 22 chr11 120056360 120056451 -1787405 + B1_Mur3 SINE Alu 11 100 -49 1 1500 985 105 0 80 chr11 120056448 120056485 -1787371 - B2_Mm2 SINE B2 -7 188 159 1 1500 398 94 16 0 chr11 120056485 120056549 -1787307 + (TTA)n Simple_repeat Simple_repeat 2 66 0 1 1500 985 105 0 80 chr11 120056549 120056687 -1787169 - B2_Mm2 SINE B2 -37 158 27 1 1500 207 0 0 0 chr11 120056707 120056730 -1787126 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 1 1500 1360 83 33 0 chr11 120056744 120056924 -1786932 - B2_Mm2 SINE B2 -8 187 2 1 1500 315 0 0 0 chr11 120056983 120057018 -1786838 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1500 633 73 0 0 chr11 120057018 120057113 -1786743 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 1500 353 298 30 76 chr11 120057123 120057254 -1786602 + RSINE1 SINE B4 11 135 -30 1 1500 1215 84 95 6 chr11 120057341 120057520 -1786336 + B2_Mm2 SINE B2 1 195 0 1 1500 861 135 26 19 chr11 120057579 120057851 -1786005 + (CA)n Simple_repeat Simple_repeat 1 274 0 1 1500 213 211 39 0 chr11 120057938 120057990 -1785866 + ID2 SINE ID 27 80 -3 1 1500 410 164 11 14 chr11 120058139 120058229 -1785627 + ID_B1 SINE B4 77 157 -67 1 1500 248 266 49 37 chr11 120058157 120058239 -1785617 + AluG_3 SINE Alu 139 221 -90 1 1500 653 225 51 76 chr11 120058545 120058742 -1785114 + B3A SINE B2 1 192 -6 1 1500 816 189 28 7 chr11 120059077 120059221 -1784635 + B1_Mur2 SINE Alu 1 147 -2 1 1500 446 134 0 0 chr11 120059243 120059310 -1784546 + ID4 SINE ID 1 67 -16 1 1500 1156 70 0 0 chr11 120059463 120059605 -1784251 + B1_Mus1 SINE Alu 1 142 -6 1 1500 234 176 0 0 chr11 120059609 120059660 -1784196 + A-rich Low_complexity Low_complexity 1 51 0 1 1500 260 184 0 0 chr11 120059742 120059791 -1784065 + (TTG)n Simple_repeat Simple_repeat 3 51 0 1 1500 267 179 0 0 chr11 120059796 120059863 -1783993 + (TGG)n Simple_repeat Simple_repeat 1 67 0 1 1500 297 0 0 0 chr11 120060014 120060047 -1783809 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1500 937 217 30 25 chr11 120060080 120060316 -1783540 - MER5C DNA MER1_type -34 279 43 1 1500 189 0 0 0 chr11 120060436 120060457 -1783399 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 1 1500 267 260 91 30 chr11 120060576 120060675 -1783181 - MLT1A1 LTR MaLR -6 402 298 1 1501 324 254 39 47 chr11 120061991 120062119 -1781737 - L1MD2 LINE L1 0 6359 6233 1 1501 251 265 24 0 chr11 120062175 120062258 -1781598 - L1MD1 LINE L1 -238 6004 5920 1 1501 755 123 0 0 chr11 120062292 120062406 -1781450 - B1_Mur3 SINE Alu -17 132 19 1 1501 305 273 16 120 chr11 120062540 120062665 -1781191 + ORR1D1 LTR MaLR 261 372 -2 1 1501 281 259 47 168 chr11 120062685 120062716 -1781140 - B2_Mm2 SINE B2 -2 193 164 1 1501 616 193 13 88 chr11 120062716 120062875 -1780981 - B1_Mur2 SINE Alu -1 148 2 1 1501 281 259 47 168 chr11 120062875 120062901 -1780955 - B2_Mm2 SINE B2 -32 163 155 1 1501 675 203 7 45 chr11 120062901 120063056 -1780800 + B1_Mur2 SINE Alu 1 149 0 1 1501 354 208 90 68 chr11 120063056 120063211 -1780645 - B3A SINE B2 -41 154 6 1 1501 888 283 78 35 chr11 120063215 120063650 -1780206 - L1MD1 LINE L1 -535 5707 5254 1 1501 617 219 48 92 chr11 120063687 120063893 -1779963 - B3A SINE B2 0 198 2 1 1501 905 121 30 0 chr11 120063906 120064425 -1779431 + (TAGA)n Simple_repeat Simple_repeat 1 534 0 1 1501 779 120 39 0 chr11 120064436 120064644 -1779212 + (TAGA)n Simple_repeat Simple_repeat 1 216 0 1 1501 300 53 0 0 chr11 120064724 120064762 -1779094 + (TCC)n Simple_repeat Simple_repeat 3 40 0 1 1501 1295 93 6 6 chr11 120064787 120064970 -1778886 - B2_Mm2 SINE B2 -11 184 2 1 1501 600 311 79 49 chr11 120064976 120065344 -1778512 - MTE2b LTR MaLR 0 379 1 1 1501 282 330 9 19 chr11 120065363 120065468 -1778388 - PB1D10 SINE Alu 0 117 14 1 1501 213 119 0 0 chr11 120065507 120065549 -1778307 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1501 443 223 176 13 chr11 120065552 120065711 -1778145 - L1MC4 LINE L1 -1 8041 7857 1 1501 1050 108 0 0 chr11 120065791 120066129 -1777727 + (CTG)n Simple_repeat Simple_repeat 1 338 0 1 1501 1092 105 0 0 chr11 120066154 120066489 -1777367 + (CTG)n Simple_repeat Simple_repeat 1 335 0 1 1501 1151 75 7 0 chr11 120066567 120066713 -1777143 - B1_Mus2 SINE Alu 0 147 1 1 1501 762 185 0 22 chr11 120066713 120066851 -1777005 + B1_Mus2 SINE Alu 12 146 -1 1 1501 559 259 52 7 chr11 120067325 120067461 -1776395 - ID_B1 SINE B4 -2 222 81 1 1501 1448 280 111 51 chr11 120067489 120068280 -1775576 - L1MC4 LINE L1 -478 7564 6726 1 1501 300 374 31 21 chr11 120068530 120068721 -1775135 - MLT1C LTR MaLR -27 440 248 1 1501 403 185 23 17 chr11 120068930 120069106 -1774750 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 1 1501 496 163 28 0 chr11 120069123 120069264 -1774592 + (TCTG)n Simple_repeat Simple_repeat 4 148 0 1 1501 360 0 0 0 chr11 120069864 120069904 -1773952 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1 1501 1623 28 0 0 chr11 120069904 120070084 -1773772 - B2_Mm1a SINE B2 -13 180 1 1 1501 309 215 0 15 chr11 120070102 120070168 -1773688 - PB1D10 SINE Alu -2 115 51 1 1501 1163 112 31 21 chr11 120070237 120070429 -1773427 + B2_Mm2 SINE B2 2 195 0 1 1501 1285 79 67 0 chr11 120071627 120071805 -1772051 - B2_Mm2 SINE B2 -5 190 1 1 1501 843 160 114 40 chr11 120071811 120071987 -1771869 - B2_Mm2 SINE B2 -6 189 1 1 1501 234 91 0 0 chr11 120072153 120072186 -1771670 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1501 297 0 0 0 chr11 120072285 120072318 -1771538 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1501 353 221 116 0 chr11 120072417 120072503 -1771353 - RSINE1 SINE B4 -33 132 37 1 1501 944 176 0 0 chr11 120072589 120072737 -1771119 - B1_Mus1 SINE Alu 0 148 1 1 1501 1624 22 11 0 chr11 120072749 120072932 -1770924 - B2_Mm1a SINE B2 -7 186 2 1 1501 251 333 33 60 chr11 120072960 120072971 -1770885 + ID_B1 SINE B4 78 151 -73 1 1501 420 274 46 23 chr11 120072971 120073102 -1770754 + B1F SINE Alu 7 140 -9 1 1501 658 151 0 0 chr11 120073121 120073227 -1770629 + B3 SINE B2 2 107 -109 1 1501 1991 137 88 8 chr11 120073232 120073586 -1770270 - MTC LTR MaLR -39 382 1 1 1501 4964 145 111 70 chr11 120073586 120074025 -1769831 - MTC-int LTR MaLR 0 1258 842 1 1501 3155 55 39 0 chr11 120074025 120074408 -1769448 + MTB LTR MaLR 3 400 0 1 1501 4964 145 111 70 chr11 120074408 120074797 -1769059 - MTC-int LTR MaLR -417 841 387 1 1501 885 153 14 20 chr11 120074797 120074944 -1768912 - B1_Mus1 SINE Alu -1 147 2 1 1501 4964 145 111 70 chr11 120074944 120075323 -1768533 - MTC-int LTR MaLR -872 386 1 1 1501 1494 214 82 28 chr11 120075323 120075598 -1768258 - MTC LTR MaLR -37 384 110 1 1501 1346 105 15 26 chr11 120075598 120075793 -1768063 - B2_Mm2 SINE B2 0 195 3 1 1501 1494 207 85 25 chr11 120075793 120075804 -1768052 - MTC LTR MaLR -312 109 99 1 1501 203 0 0 36 chr11 120075804 120075832 -1768024 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1501 1130 80 0 0 chr11 120075832 120075970 -1767886 - B1_Mus1 SINE Alu -9 139 2 1 1501 1494 207 85 25 chr11 120075970 120076062 -1767794 - MTC LTR MaLR -323 98 3 1 1501 1124 72 0 0 chr11 120076089 120076228 -1767628 + B1_Mus1 SINE Alu 1 139 -9 1 1501 315 0 0 0 chr11 120076228 120076263 -1767593 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1501 603 129 0 73 chr11 120076529 120076638 -1767218 + B3 SINE B2 3 103 -113 1 1501 394 348 72 18 chr11 120078449 120078780 -1765076 + L1M5 LINE L1 4775 5123 -1023 1 1501 635 215 56 0 chr11 120078818 120078962 -1764894 + RSINE1 SINE B4 14 165 0 1 1501 951 149 216 11 chr11 120078991 120079167 -1764689 - B3 SINE B2 0 216 5 1 1501 244 286 0 18 chr11 120079210 120079267 -1764589 + ID SINE ID 23 78 -146 1 1501 713 280 71 52 chr11 120079700 120080097 -1763759 + MLT2B4 LTR ERVL 5 556 0 1 1501 327 304 82 10 chr11 120080157 120080353 -1763503 - MLT1C LTR MaLR -54 413 204 1 1501 646 261 49 0 chr11 120080578 120080720 -1763136 + B1F SINE Alu 1 149 0 1 1501 617 270 43 11 chr11 120080766 120080953 -1762903 + ID_B1 SINE B4 25 217 -7 1 1501 341 180 286 22 chr11 120080966 120081057 -1762799 + PB1D9 SINE Alu 6 120 0 1 1501 330 115 0 0 chr11 120081180 120081232 -1762624 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1501 299 250 25 38 chr11 120081761 120081840 -1762016 - B1F SINE Alu -1 148 71 1 1501 238 284 107 13 chr11 120082997 120083072 -1760784 + PB1D7 SINE Alu 29 110 -10 1 1501 747 140 21 0 chr11 120083343 120083486 -1760370 + CT-rich Low_complexity Low_complexity 1 146 0 1 1501 834 167 0 8 chr11 120083490 120083623 -1760233 - B1_Mur3 SINE Alu -16 133 2 1 1501 333 131 0 0 chr11 120085508 120085569 -1758287 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1501 345 275 106 21 chr11 120085640 120085781 -1758075 - L3 LINE CR1 -711 3778 3626 1 1501 345 24 0 0 chr11 120089776 120089818 -1754038 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1501 21 36 0 0 chr11 120090517 120090545 -1753311 + AT_rich Low_complexity Low_complexity 1 28 0 1 1501 969 107 0 20 chr11 120091058 120091211 -1752645 + URR1A DNA MER1_type 77 226 0 1 1501 205 183 33 16 chr11 120094435 120094496 -1749360 + T-rich Low_complexity Low_complexity 2 63 0 1 1501 228 184 0 0 chr11 120097752 120097801 -1746055 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1501 33 0 0 0 chr11 120098360 120098393 -1745463 + GC_rich Low_complexity Low_complexity 1 33 0 1 1501 226 118 39 19 chr11 120098451 120098503 -1745353 + (CCG)n Simple_repeat Simple_repeat 3 55 0 1 1501 203 61 30 0 chr11 120101294 120101327 -1742529 + (CGGGGG)n Simple_repeat Simple_repeat 3 36 0 1 1501 25 0 0 0 chr11 120102032 120102057 -1741799 + AT_rich Low_complexity Low_complexity 1 25 0 1 1501 1221 41 0 0 chr11 120105354 120105500 -1738356 + B1_Mus2 SINE Alu 1 146 -1 1 1501 186 43 0 0 chr11 120105513 120105536 -1738320 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 1501 342 0 0 0 chr11 120105853 120105891 -1737965 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1501 258 297 17 122 chr11 120107245 120107360 -1736496 - MLT1F2 LTR MaLR 0 560 458 2 1501 225 0 0 0 chr11 120107959 120107984 -1735872 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 2 1501 1170 69 0 0 chr11 120108842 120108986 -1734870 + B1_Mus1 SINE Alu 5 148 0 2 1501 207 283 38 0 chr11 120109028 120109081 -1734775 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 2 1501 1255 120 6 0 chr11 120110849 120111024 -1732832 + B2_Mm1t SINE B2 1 176 -17 2 1501 639 176 25 0 chr11 120111040 120111159 -1732697 + B1_Mur2 SINE Alu 15 136 -13 2 1501 783 104 0 0 chr11 120111167 120111282 -1732574 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 2 1501 246 128 0 0 chr11 120114052 120114091 -1729765 + (TCC)n Simple_repeat Simple_repeat 2 40 0 2 1501 657 254 100 132 chr11 120115196 120115433 -1728423 - MTD LTR MaLR -15 404 161 2 1501 333 0 0 0 chr11 120115433 120115470 -1728386 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1501 657 254 100 132 chr11 120115470 120115581 -1728275 - MTD LTR MaLR -259 160 67 2 1501 324 0 0 0 chr11 120117212 120117248 -1726608 + (TGG)n Simple_repeat Simple_repeat 2 37 0 2 1501 210 71 0 0 chr11 120117861 120117889 -1725967 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 2 1501 347 352 0 37 chr11 120119578 120119740 -1724116 - HAL1-2a_MD LINE L1 -536 2488 2333 2 1501 354 355 30 12 chr11 120119750 120119918 -1723938 - HAL1-2a_MD LINE L1 -515 2509 2339 2 1501 356 277 46 46 chr11 120119972 120120146 -1723710 - HAL1-2a_MD LINE L1 -528 2496 2323 2 1501 442 350 35 0 chr11 120124213 120124356 -1719500 - B1F2 SINE Alu 0 149 2 2 1501 804 264 28 153 chr11 120124375 120124590 -1719266 - B3A SINE B2 0 198 4 2 1501 243 336 187 14 chr11 120125557 120125696 -1718160 - MER117 DNA MER1_type 0 197 35 2 1501 261 0 0 0 chr11 120126815 120126844 -1717012 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1501 824 222 20 77 chr11 120128352 120128547 -1715309 - B3 SINE B2 -5 211 28 2 1501 614 168 85 31 chr11 120128556 120128685 -1715171 - B1_Mus2 SINE Alu 0 147 12 2 1501 359 311 67 22 chr11 120128565 120128700 -1715156 - B4 SINE B4 -69 223 83 2 1501 216 0 0 0 chr11 120128738 120128762 -1715094 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1501 23 0 0 0 chr11 120129363 120129386 -1714470 + GC_rich Low_complexity Low_complexity 1 23 0 2 1501 591 78 0 0 chr11 120130314 120130404 -1713452 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 1501 1266 41 0 0 chr11 120131678 120131825 -1712031 + B1_Mus2 SINE Alu 1 147 0 2 1501 330 295 79 0 chr11 120132195 120132334 -1711522 + L1MB3 LINE L1 6033 6182 -1 2 1501 942 216 85 25 chr11 120132357 120132556 -1711300 - B3 SINE B2 -5 211 1 2 1501 216 0 0 0 chr11 120132569 120132593 -1711263 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1501 654 104 0 0 chr11 120135868 120135964 -1707892 + (CAG)n Simple_repeat Simple_repeat 3 98 0 2 1501 519 45 0 0 chr11 120136999 120137065 -1706791 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 1501 189 0 0 0 chr11 120143964 120143985 -1699871 + (TGG)n Simple_repeat Simple_repeat 1 21 0 2 1501 234 261 29 0 chr11 120144002 120144071 -1699785 - B1_Mur3 SINE Alu -34 115 45 2 1501 213 39 0 0 chr11 120147164 120147190 -1696666 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 2 1501 295 185 0 0 chr11 120149432 120149486 -1694370 + B3A SINE B2 66 119 -79 2 1501 318 229 84 0 chr11 120149538 120149636 -1694220 - PB1D9 SINE Alu -1 146 36 2 1501 1427 75 32 5 chr11 120149636 120149825 -1694031 - B2_Mm2 SINE B2 0 195 2 2 1501 864 159 7 27 chr11 120150156 120150305 -1693551 - B1_Mur1 SINE Alu -3 146 1 2 1501 396 103 0 0 chr11 120151618 120151676 -1692180 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1501 637 260 0 8 chr11 120153992 120154124 -1689732 + B1F2 SINE Alu 6 136 -13 2 1501 224 328 0 0 chr11 120154949 120155013 -1688843 + ID4_ SINE ID 4 67 -16 2 1501 328 154 30 15 chr11 120155031 120155097 -1688759 + HAL1-3A_ME LINE L1 1973 2039 -819 2 1501 205 152 0 0 chr11 120157867 120157900 -1685956 + C-rich Low_complexity Low_complexity 4 36 0 2 1501 323 314 68 48 chr11 120159250 120159397 -1684459 + MLT1K LTR MaLR 152 301 -294 2 1501 1221 62 0 0 chr11 120159573 120159719 -1684137 + B1_Mm SINE Alu 2 147 0 2 1501 305 222 82 14 chr11 120159719 120159854 -1684002 - MER53 DNA hAT -42 151 5 2 1501 626 273 37 21 chr11 120160390 120160610 -1683246 + ID_B1 SINE B4 55 277 -15 2 1501 570 235 58 14 chr11 120161419 120161557 -1682299 + B1_Mus1 SINE Alu 4 147 -1 2 1501 303 267 70 0 chr11 120161574 120161660 -1682196 + L1MDa LINE L1 2438 2529 -4104 2 1501 403 182 39 0 chr11 120161712 120161789 -1682067 + ID4_ SINE ID 2 81 -2 2 1501 862 195 0 20 chr11 120161817 120161969 -1681887 + B1_Mur4 SINE Alu 1 149 -1 2 1501 401 239 0 83 chr11 120162038 120162134 -1681722 + U6 snRNA snRNA 17 104 -3 2 1501 204 40 0 0 chr11 120162146 120162171 -1681685 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 2 1501 471 130 0 0 chr11 120162191 120162268 -1681588 + (GGGGA)n Simple_repeat Simple_repeat 4 80 0 2 1501 1434 45 0 0 chr11 120162268 120162446 -1681410 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 2 1501 252 0 0 0 chr11 120162449 120162477 -1681379 + (GAGAA)n Simple_repeat Simple_repeat 1 28 0 2 1501 297 301 46 11 chr11 120162666 120162788 -1681068 + MLT1J2 LTR MaLR 9 174 -338 2 1501 217 344 55 23 chr11 120163153 120163281 -1680575 + L2b LINE L2 3206 3337 -38 2 1501 965 175 7 11 chr11 120163996 120164286 -1679570 + (CATA)n Simple_repeat Simple_repeat 1 288 0 2 1501 234 286 179 56 chr11 120165821 120166017 -1677839 + LTR33 LTR ERVL 266 485 -30 2 1501 26 30 0 0 chr11 120166701 120166734 -1677122 + GC_rich Low_complexity Low_complexity 1 33 0 2 1501 510 96 0 0 chr11 120169205 120169278 -1674578 + (A)n Simple_repeat Simple_repeat 1 73 0 2 1501 407 264 22 0 chr11 120169319 120169410 -1674446 + PB1D10 SINE Alu 2 94 -23 2 1501 800 217 0 25 chr11 120169419 120169580 -1674276 + B3A SINE B2 1 157 -41 2 1501 355 338 41 48 chr11 120169601 120169893 -1673963 + B4A SINE B4 3 292 0 2 1501 620 232 75 97 chr11 120170573 120170759 -1673097 + B3 SINE B2 12 193 -2 2 1501 1343 57 11 0 chr11 120170762 120170938 -1672918 + B2_Mm1t SINE B2 2 179 -14 2 1501 954 62 8 0 chr11 120170952 120171081 -1672775 + B2_Mm1t SINE B2 50 179 -14 2 1501 366 59 0 0 chr11 120171097 120171148 -1672708 + B2_Mm2 SINE B2 51 101 -94 2 1501 27 29 0 0 chr11 120171164 120171198 -1672658 + AT_rich Low_complexity Low_complexity 1 34 0 2 1501 986 104 14 0 chr11 120171513 120171657 -1672199 - B1_Mus1 SINE Alu -2 146 1 2 1501 262 236 91 61 chr11 120171675 120171696 -1672160 - B1_Mm SINE Alu -45 102 86 2 1501 728 193 226 0 chr11 120171696 120171877 -1671979 - ID_B1 SINE B4 0 224 3 2 1501 265 206 28 32 chr11 120171877 120171954 -1671902 - B1F2 SINE Alu -62 85 1 2 1501 331 281 24 0 chr11 120174092 120174174 -1669682 + B1F SINE Alu 14 97 -52 2 1501 848 189 0 0 chr11 120174246 120174394 -1669462 - B1_Mur3 SINE Alu 0 149 2 2 1501 298 261 44 84 chr11 120174465 120174587 -1669269 + B4A SINE B4 9 224 0 2 1501 426 214 57 28 chr11 120174587 120174693 -1669163 + B1_Mus1 SINE Alu 40 148 0 2 1501 515 280 45 0 chr11 120174746 120174878 -1668978 + RSINE1 SINE B4 28 165 0 2 1501 442 171 0 24 chr11 120175122 120175206 -1668650 + PB1D9 SINE Alu 31 112 -8 2 1501 232 209 229 52 chr11 120175206 120175218 -1668638 + B4 SINE B4 116 228 -64 2 1501 195 42 0 0 chr11 120175894 120175918 -1667938 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1501 257 79 0 0 chr11 120175949 120175987 -1667869 - B1_Mur4 SINE Alu -112 38 1 2 1501 297 0 0 0 chr11 120175991 120176024 -1667832 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 1501 480 273 122 9 chr11 120176815 120176997 -1666859 + MLT1F1 LTR MaLR 391 623 -1 2 1501 437 0 19 0 chr11 120177145 120177198 -1666658 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1501 200 59 0 29 chr11 120178887 120178922 -1664934 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 2 1501 384 316 11 0 chr11 120179113 120179208 -1664648 + ID_B1 SINE B4 124 219 -5 2 1501 189 0 0 0 chr11 120179311 120179332 -1664524 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2 1501 597 165 107 0 chr11 120179336 120179457 -1664399 - B1_Mus1 SINE Alu -12 136 3 2 1501 252 86 0 0 chr11 120179467 120179502 -1664354 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1501 1171 21 0 0 chr11 120179504 120179647 -1664209 - B1_Mus2 SINE Alu -4 143 1 2 1501 374 226 88 0 chr11 120179706 120179808 -1664048 + PB1D10 SINE Alu 7 117 0 2 1501 283 319 82 67 chr11 120179848 120180043 -1663813 + B3A SINE B2 1 198 0 2 1501 943 138 0 46 chr11 120180052 120180204 -1663652 + B1_Mus2 SINE Alu 2 146 -1 2 1501 220 0 86 0 chr11 120180367 120180402 -1663454 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1501 1195 48 0 0 chr11 120180402 120180548 -1663308 - B1_Mus2 SINE Alu 0 147 2 2 1501 415 226 22 88 chr11 120180803 120180939 -1662917 - B1_Mur2 SINE Alu -22 127 1 2 1501 235 288 58 103 chr11 120180939 120181082 -1662774 - MT2C_Mm LTR ERVL -270 205 71 2 1501 484 269 69 0 chr11 120180976 120181106 -1662750 - ID_B1 SINE B4 -9 215 77 2 1501 1144 49 0 0 chr11 120181162 120181305 -1662551 + B1_Mus1 SINE Alu 1 143 -5 2 1501 1456 31 0 35 chr11 120181758 120181860 -1661996 - RLTR10C LTR ERVK 0 436 341 3 1501 3611 37 5 0 chr11 120181860 120182294 -1661562 + RLTR10C LTR ERVK 1 436 0 3 1501 1456 31 0 35 chr11 120182294 120182389 -1661467 - RLTR10C LTR ERVK -96 340 246 3 1501 2854 24 0 0 chr11 120182389 120182724 -1661132 + IAPLTR1a_Mm LTR ERVK 1 335 -2 3 1501 54457 23 5 11 chr11 120182724 120189239 -1654617 + IAPEz-int LTR ERVK 6 6481 0 3 1501 2840 27 0 0 chr11 120189239 120189574 -1654282 + IAPLTR1a_Mm LTR ERVK 1 335 -2 3 1501 1778 46 50 0 chr11 120189576 120189815 -1654041 - RLTR10C LTR ERVK -185 251 1 3 1501 4780 78 6 5 chr11 120189815 120190818 -1653038 - MMERVK10C-int LTR ERVK 0 7680 6651 3 187 38544 59 1 4 chr11 120190809 120195766 -1648090 - MMERVK10C-int LTR ERVK -1771 5810 870 3 1502 1558 93 12 21 chr11 120195764 120196042 -1647814 - MMERVK10C-int LTR ERVK -7182 399 72 3 1502 3396 45 33 0 chr11 120196058 120196480 -1647376 - RLTR10C LTR ERVK 0 436 1 3 1502 547 323 145 28 chr11 120196536 120197100 -1646756 + L1MC3 LINE L1 5469 6098 -1687 3 1502 400 274 38 0 chr11 120197254 120197360 -1646496 + PB1D10 SINE Alu 5 114 -3 3 1502 430 157 20 0 chr11 120197365 120197467 -1646389 + GA-rich Low_complexity Low_complexity 2 105 0 3 1502 282 290 83 47 chr11 120197487 120197679 -1646177 + L1MC3 LINE L1 6209 6407 -1588 3 1502 262 241 21 84 chr11 120197788 120197883 -1645973 + L1MC3 LINE L1 6585 6673 -1112 3 1502 686 230 37 93 chr11 120198359 120198575 -1645281 + B3 SINE B2 2 205 -11 3 1502 1237 115 16 0 chr11 120198579 120198770 -1645086 + B2_Mm2 SINE B2 2 195 0 3 1502 792 201 65 25 chr11 120198875 120199074 -1644782 - B3 SINE B2 -7 209 3 3 1502 267 157 0 0 chr11 120199164 120199234 -1644622 + T-rich Low_complexity Low_complexity 1 70 0 3 1502 1041 96 7 0 chr11 120199234 120199380 -1644476 - B1_Mus2 SINE Alu 0 147 1 3 1502 481 271 14 14 chr11 120199418 120199564 -1644292 + B1_Mm SINE Alu 2 147 0 3 1502 774 223 108 5 chr11 120199577 120199771 -1644085 - B3 SINE B2 -1 215 2 3 1502 312 215 112 51 chr11 120199780 120199878 -1643978 - PB1D10 SINE Alu -8 109 6 3 1502 275 304 37 47 chr11 120199948 120200055 -1643801 + PB1D7 SINE Alu 13 118 -2 3 1502 292 254 2 20 chr11 120200067 120200153 -1643703 + BC1_Mm scRNA scRNA 8 92 -60 3 1502 1025 109 31 42 chr11 120200153 120200344 -1643512 + B2_Mm2 SINE B2 5 193 -2 3 1502 292 269 8 42 chr11 120200344 120200361 -1643495 + BC1_Mm scRNA scRNA 93 106 -46 3 1502 765 49 197 0 chr11 120200361 120200483 -1643373 + B1_Mm SINE Alu 2 147 0 3 1502 292 269 8 42 chr11 120200483 120200505 -1643351 + BC1_Mm scRNA scRNA 107 129 -23 3 1502 433 271 7 48 chr11 120200555 120200702 -1643154 + B3 SINE B2 70 210 -6 3 1502 305 315 68 15 chr11 120200717 120200849 -1643007 + B4A SINE B4 4 142 -150 3 1502 377 215 27 0 chr11 120200919 120201068 -1642788 + CT-rich Low_complexity Low_complexity 1 153 0 3 1502 333 125 0 0 chr11 120201055 120201111 -1642745 + (TCCCC)n Simple_repeat Simple_repeat 1 56 0 3 1502 378 277 69 85 chr11 120201132 120201262 -1642594 + ID_B1 SINE B4 82 209 -15 3 1502 233 29 29 0 chr11 120201949 120201983 -1641873 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1502 1198 48 0 0 chr11 120202021 120202167 -1641689 + B1_Mm SINE Alu 2 147 0 3 1502 198 0 0 0 chr11 120202178 120202200 -1641656 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1502 999 39 0 0 chr11 120202204 120202331 -1641525 + B1_Mus1 SINE Alu 22 148 0 3 1502 730 167 0 16 chr11 120202394 120202516 -1641340 - B3 SINE B2 -96 120 1 3 1502 504 221 0 9 chr11 120202590 120202695 -1641161 + PB1D10 SINE Alu 1 104 -13 3 1502 1618 16 5 0 chr11 120202695 120202886 -1640970 + B2_Mm1t SINE B2 1 192 -1 3 1502 201 239 0 0 chr11 120202994 120203040 -1640816 + GA-rich Low_complexity Low_complexity 3 48 0 3 1502 431 263 170 48 chr11 120203067 120203255 -1640601 + B4A SINE B4 6 216 -76 3 1502 1110 82 0 0 chr11 120203256 120203402 -1640454 + B1_Mm SINE Alu 2 147 0 3 1502 1482 47 5 0 chr11 120203461 120203652 -1640204 + B2_Mm1a SINE B2 2 193 0 3 1502 1177 48 0 0 chr11 120203675 120203822 -1640034 + B1_Mus1 SINE Alu 2 148 0 3 1502 1398 44 38 0 chr11 120203864 120204047 -1639809 + B2_Mm2 SINE B2 2 191 -4 3 1502 358 239 47 126 chr11 120204082 120204273 -1639583 + ID_B1 SINE B4 47 222 -2 3 1502 851 89 16 0 chr11 120204378 120204502 -1639354 + B1_Mus2 SINE Alu 21 146 -1 3 1502 495 0 0 0 chr11 120204508 120204563 -1639293 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 3 1502 201 171 0 0 chr11 120204594 120204629 -1639227 + A-rich Low_complexity Low_complexity 1 35 0 3 1502 211 227 23 0 chr11 120205101 120205145 -1638711 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 3 1502 661 125 62 15 chr11 120205459 120205589 -1638267 - B1_Mur4 SINE Alu -14 136 1 3 1502 677 150 9 0 chr11 120205617 120205730 -1638126 - B1_Mur1 SINE Alu -2 147 34 3 1502 837 104 104 7 chr11 120205776 120205911 -1637945 - B1_Mus1 SINE Alu 0 148 1 3 1502 304 227 41 98 chr11 120205915 120206037 -1637819 - B3 SINE B2 -7 209 95 3 1502 230 56 28 0 chr11 120206098 120206134 -1637722 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1502 320 357 107 11 chr11 120206134 120206187 -1637669 - ID_B1 SINE B4 -18 206 148 3 1502 1239 72 0 52 chr11 120206187 120206378 -1637478 + B2_Mm1a SINE B2 1 181 -12 3 1502 320 357 107 11 chr11 120206378 120206511 -1637345 - ID_B1 SINE B4 -77 147 2 3 1502 37 0 0 0 chr11 120209843 120209880 -1633976 + GC_rich Low_complexity Low_complexity 1 37 0 3 1502 203 203 0 30 chr11 120209963 120210029 -1633827 + C-rich Low_complexity Low_complexity 1 64 0 3 1502 22 0 0 0 chr11 120210147 120210169 -1633687 + GC_rich Low_complexity Low_complexity 1 22 0 3 1502 23 0 0 0 chr11 120211428 120211451 -1632405 + GC_rich Low_complexity Low_complexity 1 23 0 3 1502 697 173 21 14 chr11 120212915 120213056 -1630800 + B1_Mur3 SINE Alu 2 143 -6 3 1502 1148 95 5 87 chr11 120213521 120213692 -1630164 + B2_Mm1t SINE B2 2 167 -26 3 1502 1116 69 7 0 chr11 120213692 120213837 -1630019 + B1_Mus2 SINE Alu 2 147 0 3 1502 1148 95 5 87 chr11 120213837 120213861 -1629995 + B2_Mm1t SINE B2 168 181 -12 3 1502 321 124 0 22 chr11 120213891 120213957 -1629899 + B2_Mm2 SINE B2 47 109 -107 3 1502 199 0 31 31 chr11 120214759 120214791 -1629065 + (CCA)n Simple_repeat Simple_repeat 2 33 0 3 1502 1128 34 7 7 chr11 120215620 120215767 -1628089 - B1_Mus2 SINE Alu 0 147 1 3 1502 258 199 262 0 chr11 120215768 120215844 -1628012 - B1_Mur2 SINE Alu 0 149 56 3 1502 768 152 30 0 chr11 120215888 120216020 -1627836 - B1_Mur3 SINE Alu -12 137 2 3 1502 389 252 26 18 chr11 120216392 120216505 -1627351 + B3A SINE B2 2 115 -80 3 1502 489 17 0 0 chr11 120216509 120216567 -1627289 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1502 777 199 55 28 chr11 120216584 120216737 -1627119 + MTD LTR MaLR 219 381 -38 3 1502 2383 66 146 0 chr11 120216737 120217086 -1626770 + MTB LTR MaLR 1 400 0 3 1502 777 199 55 28 chr11 120217086 120217113 -1626743 + MTD LTR MaLR 382 404 -15 3 1502 461 266 39 15 chr11 120217131 120217261 -1626595 + B4A SINE B4 99 231 -61 3 1502 1389 58 21 11 chr11 120217261 120217452 -1626404 + B2_Mm2 SINE B2 1 193 -2 3 1502 378 279 30 30 chr11 120217460 120217593 -1626263 + RSINE1 SINE B4 2 134 -31 3 1502 431 276 8 8 chr11 120218310 120218427 -1625429 + PB1D10 SINE Alu 1 117 0 3 1502 1082 86 79 17 chr11 120218438 120218615 -1625241 + B2_Mm1t SINE B2 2 189 -4 3 1502 1089 88 0 0 chr11 120218618 120218765 -1625091 + B1_Mus2 SINE Alu 1 147 0 3 1502 477 162 9 26 chr11 120218766 120218799 -1625057 + Lx9 LINE L1 7531 7563 -81 3 1502 285 29 0 0 chr11 120218799 120218833 -1625023 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1502 477 162 9 26 chr11 120218833 120218913 -1624943 + Lx9 LINE L1 7564 7642 -2 3 1502 305 241 38 0 chr11 120225139 120225218 -1618638 + ID4 SINE ID 2 83 0 3 1502 681 182 134 76 chr11 120225291 120225463 -1618393 - B3A SINE B2 -16 182 1 3 1502 1125 48 7 7 chr11 120225505 120225651 -1618205 + B1_Mm SINE Alu 2 147 0 3 1502 439 219 195 0 chr11 120225686 120225809 -1618047 + B1_Mur2 SINE Alu 1 147 -2 3 1502 376 302 26 45 chr11 120225816 120225972 -1617884 - RSINE1 SINE B4 0 165 13 3 1502 423 160 131 9 chr11 120225994 120226101 -1617755 - PB1D9 SINE Alu 0 120 1 3 1502 815 191 0 0 chr11 120226991 120227138 -1616718 + B3 SINE B2 1 147 -69 3 1502 346 150 296 17 chr11 120228206 120228321 -1615535 - B1_Mur1 SINE Alu 0 149 3 3 1502 234 62 0 0 chr11 120232111 120232143 -1611713 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1502 295 253 36 12 chr11 120232352 120232436 -1611420 - PB1D10 SINE Alu -22 95 10 3 1502 647 159 9 9 chr11 120232461 120232575 -1611281 - PB1D9 SINE Alu -3 117 4 3 1502 378 0 0 0 chr11 120232889 120232931 -1610925 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1502 183 80 0 0 chr11 120237463 120237488 -1606368 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1502 270 0 0 0 chr11 120239097 120239127 -1604729 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1502 297 0 0 0 chr11 120239127 120239159 -1604697 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1502 200 180 19 39 chr11 120239824 120239876 -1603980 + (CCCG)n Simple_repeat Simple_repeat 1 51 0 3 1502 215 154 167 15 chr11 120240726 120240792 -1603064 + PB1 SINE Alu 23 98 -29 3 1502 607 209 58 10 chr11 120240933 120241104 -1602752 + B3A SINE B2 1 176 -19 3 1502 631 199 37 0 chr11 120241108 120241244 -1602612 + B1_Mm SINE Alu 7 147 0 3 1502 285 232 0 0 chr11 120241308 120241364 -1602492 - PB1D9 SINE Alu -64 56 1 3 1502 240 269 86 0 chr11 120244337 120244430 -1599426 - L1M5 LINE L1 -946 5498 5398 3 1502 731 42 0 0 chr11 120244785 120244880 -1598976 - B1_Mus2 SINE Alu 0 147 53 3 1502 1329 74 0 6 chr11 120245125 120245302 -1598554 + B2_Mm2 SINE B2 1 176 -19 3 1502 481 165 47 0 chr11 120246263 120246348 -1597508 - B1_Mus2 SINE Alu -56 91 3 3 1502 481 196 41 10 chr11 120247297 120247395 -1596461 - B1_Mur4 SINE Alu -47 103 3 3 1502 432 0 0 0 chr11 120248378 120248426 -1595430 + (TTATA)n Simple_repeat Simple_repeat 1 48 0 3 1502 591 184 17 9 chr11 120248762 120248877 -1594979 + PB1D9 SINE Alu 5 120 0 3 1502 2537 54 0 0 chr11 120248938 120249269 -1594587 + L1Md_F2 LINE L1 6252 6582 0 3 1502 1356 68 5 16 chr11 120249394 120249587 -1594269 + B2_Mm1a SINE B2 3 193 0 4 1502 198 91 0 0 chr11 120250824 120250857 -1592999 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 4 1502 408 40 0 0 chr11 120250857 120250907 -1592949 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 4 1502 343 317 40 0 chr11 120250921 120251022 -1592834 - B1F2 SINE Alu -44 105 1 4 1502 430 231 122 8 chr11 120251045 120251176 -1592680 + B1_Mur2 SINE Alu 4 149 0 4 1502 1083 81 0 7 chr11 120251182 120251331 -1592525 - B1_Mus1 SINE Alu 0 148 1 4 1502 6878 11 0 7 chr11 120251822 120252632 -1591224 + L1Md_T LINE L1 5779 6582 0 4 1502 474 101 0 0 chr11 120252984 120253053 -1590803 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1502 248 261 196 0 chr11 120254893 120254985 -1588871 + PB1D10 SINE Alu 1 110 -7 4 1502 667 202 211 11 chr11 120256162 120256342 -1587514 + B3 SINE B2 1 216 0 4 1502 571 120 60 6 chr11 120256525 120256693 -1587163 + CT-rich Low_complexity Low_complexity 1 177 0 4 1502 1159 68 0 0 chr11 120256759 120256906 -1586950 - B1_Mus1 SINE Alu 0 148 2 4 1502 636 219 21 34 chr11 120257042 120257209 -1586647 + RLTR16 LTR ERVK 362 568 0 4 1502 189 0 0 0 chr11 120257578 120257599 -1586257 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1502 1204 34 0 0 chr11 120257599 120257745 -1586111 - B1_Mus2 SINE Alu 0 147 2 4 1502 376 250 33 49 chr11 120257756 120257878 -1585978 - PB1D9 SINE Alu 0 120 1 4 1502 401 54 18 0 chr11 120258251 120258307 -1585549 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1502 641 300 42 18 chr11 120258345 120258562 -1585294 + B4A SINE B4 56 277 -15 4 1502 213 250 38 19 chr11 120258656 120258709 -1585147 - B1_Mur1 SINE Alu -12 137 84 4 1502 1164 50 0 0 chr11 120259680 120259821 -1584035 - B1_Mm SINE Alu -6 141 1 4 1502 620 158 26 0 chr11 120260272 120260386 -1583470 + B2_Mm2 SINE B2 79 195 0 4 1502 207 0 0 0 chr11 120260388 120260411 -1583445 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 4 1502 761 148 22 15 chr11 120260429 120260566 -1583290 + B1_Mur4 SINE Alu 13 150 0 4 1502 434 300 22 30 chr11 120260865 120260999 -1582857 + RSINE1 SINE B4 4 136 -29 4 1502 215 346 115 6 chr11 120260999 120261022 -1582834 + B2_Mm2 SINE B2 3 176 -19 4 1502 1577 184 85 16 chr11 120261049 120261414 -1582442 + ORR1B1 LTR MaLR 5 394 0 4 1502 283 273 26 26 chr11 120261995 120262108 -1581748 - RSINE1 SINE B4 -35 130 18 4 1502 501 217 9 19 chr11 120262104 120262212 -1581644 - B3 SINE B2 -103 113 7 4 1502 252 0 0 0 chr11 120262260 120262288 -1581568 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1502 371 248 119 0 chr11 120262289 120262390 -1581466 - ID_B1 SINE B4 -31 193 81 4 1502 824 85 7 51 chr11 120262395 120262532 -1581324 + B1_Mur4 SINE Alu 6 136 -14 4 1502 2827 113 65 11 chr11 120262904 120263378 -1580478 - RLTR19C LTR ERVK -6 500 1 4 1502 712 106 58 6 chr11 120263485 120263656 -1580200 + GA-rich Low_complexity Low_complexity 1 180 0 4 1502 547 254 137 5 chr11 120263666 120263856 -1580000 + B3 SINE B2 2 216 0 4 1502 1102 52 0 0 chr11 120263876 120264012 -1579844 - B1_Mus2 SINE Alu -11 136 1 4 1502 394 260 27 55 chr11 120264059 120264169 -1579687 + B3A SINE B2 13 119 -79 4 1502 382 234 58 116 chr11 120264235 120264356 -1579500 + B1_Mur2 SINE Alu 2 115 -5 4 1502 446 257 58 26 chr11 120264643 120264799 -1579057 + RLTR42-int LTR ERVK 1189 1349 -4173 4 1502 420 130 0 0 chr11 120265292 120265361 -1578495 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1502 210 71 0 0 chr11 120265727 120265755 -1578101 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1502 186 43 0 0 chr11 120265860 120265883 -1577973 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1502 817 220 120 0 chr11 120266050 120266241 -1577615 + ID_B1 SINE B4 11 224 0 4 1502 386 333 139 0 chr11 120266640 120266784 -1577072 + RSINE1 SINE B4 2 165 0 4 1502 26 74 0 0 chr11 120266829 120266883 -1576973 + AT_rich Low_complexity Low_complexity 1 54 0 4 1502 243 0 0 0 chr11 120267614 120267641 -1576215 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1502 216 308 0 0 chr11 120267797 120267849 -1576007 + ID4_ SINE ID 31 82 -1 4 1502 263 309 94 16 chr11 120268774 120268902 -1574954 - Tigger16a DNA Tigger -7 926 789 4 1502 665 182 75 8 chr11 120269840 120269973 -1573883 + B1_Mus1 SINE Alu 1 142 -6 4 1502 539 301 52 0 chr11 120270297 120270450 -1573406 + RSINE1 SINE B4 3 163 -2 4 1502 486 247 0 10 chr11 120270489 120270587 -1573269 + B1_Mur4 SINE Alu 22 118 -32 4 1502 243 0 0 0 chr11 120270600 120270627 -1573229 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1502 347 239 73 0 chr11 120272209 120272318 -1571538 + PB1D10 SINE Alu 1 117 0 4 1502 285 185 30 30 chr11 120272630 120272697 -1571159 - PB1D10 SINE Alu -20 97 31 4 1502 353 308 10 0 chr11 120273173 120273277 -1570579 - B1F2 SINE Alu -43 106 2 4 1502 243 328 75 0 chr11 120273278 120273412 -1570444 - B1F SINE Alu -5 144 1 4 1502 1161 61 0 0 chr11 120273844 120273991 -1569865 + B1_Mus2 SINE Alu 1 147 0 4 1502 582 202 25 0 chr11 120274038 120274157 -1569699 + RSINE1 SINE B4 43 164 -1 4 1502 318 259 0 0 chr11 120274254 120274335 -1569521 - ID_B1 SINE B4 0 224 144 4 1502 310 268 95 24 chr11 120274354 120274480 -1569376 - ID_B1 SINE B4 0 224 90 4 1502 557 170 21 0 chr11 120274390 120274484 -1569372 - B1_Mur4 SINE Alu -49 101 6 4 1502 517 281 28 21 chr11 120274507 120274649 -1569207 - ID_B1 SINE B4 -69 155 13 4 1502 1637 21 0 0 chr11 120275186 120275378 -1568478 - B2_Mm1a SINE B2 0 193 2 4 1502 314 259 6 55 chr11 120275641 120275752 -1568104 + B1F SINE Alu 4 112 -8 4 1502 369 0 0 0 chr11 120275755 120275796 -1568060 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 4 1502 214 139 0 0 chr11 120275979 120276015 -1567841 + B3 SINE B2 1 36 -180 4 1502 227 114 0 0 chr11 120276017 120276052 -1567804 + B3 SINE B2 2 36 -180 4 1502 1297 102 27 0 chr11 120276054 120276240 -1567616 + B2_Mm2 SINE B2 2 192 -3 4 1502 500 264 6 36 chr11 120276278 120276443 -1567413 + B2_Mm2 SINE B2 27 186 -9 4 1502 492 198 0 98 chr11 120276451 120276574 -1567282 + B2_Mm2 SINE B2 2 112 -83 4 1502 658 85 8 138 chr11 120276526 120276649 -1567207 - B2_Mm2 SINE B2 -87 108 2 4 1502 473 271 167 27 chr11 120276769 120276955 -1566901 + B3 SINE B2 5 216 0 4 1502 572 255 13 55 chr11 120277092 120277275 -1566581 + B3A SINE B2 11 187 -29 4 1502 638 191 42 7 chr11 120277275 120277417 -1566439 + B1_Mus2 SINE Alu 1 147 0 4 1502 572 250 11 58 chr11 120277417 120277428 -1566428 + B3A SINE B2 184 194 -4 4 1502 275 87 0 42 chr11 120277447 120277495 -1566361 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 4 1502 568 303 0 36 chr11 120278216 120278353 -1565503 - RSINE1 SINE B4 -32 133 2 4 1502 247 227 30 0 chr11 120278375 120278441 -1565415 - L1MA9 LINE L1 -5 6307 6240 4 1502 814 196 7 0 chr11 120278538 120278681 -1565175 + B1_Mus2 SINE Alu 3 146 -1 4 1502 1199 62 7 0 chr11 120278690 120278835 -1565021 + B1_Mus2 SINE Alu 2 147 0 4 1502 547 178 33 33 chr11 120279208 120279330 -1564526 + B1_Mus2 SINE Alu 3 124 -23 4 1502 330 26 0 0 chr11 120279986 120280025 -1563831 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1502 389 200 44 79 chr11 120280639 120280753 -1563103 + PB1D7 SINE Alu 11 120 0 4 1502 206 241 52 0 chr11 120280753 120280811 -1563045 + GA-rich Low_complexity Low_complexity 4 64 0 4 1502 1411 85 0 11 chr11 120280954 120281144 -1562712 + B2_Mm2 SINE B2 2 189 -6 4 1502 656 130 191 0 chr11 120281172 120281334 -1562522 + B2_Mm2 SINE B2 3 195 0 4 1502 906 157 7 13 chr11 120281338 120281487 -1562369 + B1_Mus1 SINE Alu 1 148 0 4 1502 534 227 72 0 chr11 120281841 120282010 -1561846 - B3 SINE B2 0 216 1 4 1502 234 0 0 0 chr11 120282492 120282518 -1561338 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1502 362 220 209 0 chr11 120282525 120282616 -1561240 - B1F SINE Alu -39 110 1 4 1502 1089 193 219 28 chr11 120283415 120283767 -1560089 + MTD LTR MaLR 1 419 0 4 1502 457 253 33 0 chr11 120283801 120283892 -1559964 - B1F2 SINE Alu -51 98 5 4 1502 231 301 80 29 chr11 120284450 120284587 -1559269 + L1MEd LINE L1 2 145 -5974 4 1502 532 302 13 18 chr11 120284736 120284913 -1558943 + ID_B1 SINE B4 55 224 0 4 1502 284 233 202 10 chr11 120285420 120285524 -1558332 + PB1 SINE Alu 2 125 -2 4 1502 1744 21 0 0 chr11 120285545 120285738 -1558118 + B2_Mm1a SINE B2 1 193 0 4 1502 292 264 73 127 chr11 120285804 120286008 -1557848 + MTEa LTR MaLR 149 370 -9 4 1502 237 182 17 68 chr11 120286068 120286127 -1557729 - ID4_ SINE ID -27 56 1 4 1502 514 222 74 0 chr11 120286206 120286314 -1557542 - RSINE1 SINE B4 -37 128 13 4 1502 26 0 0 0 chr11 120286327 120286353 -1557503 + AT_rich Low_complexity Low_complexity 1 26 0 4 1502 1248 61 0 0 chr11 120286378 120286525 -1557331 - B1_Mus2 SINE Alu 0 147 1 4 1502 306 233 0 121 chr11 120286723 120286806 -1557050 - ID4_ SINE ID 0 83 11 4 1502 679 222 30 0 chr11 120286830 120286965 -1556891 - B1_Mus1 SINE Alu -9 139 1 4 1502 285 250 173 12 chr11 120286995 120287076 -1556780 + B1F SINE Alu 1 94 -55 5 1502 220 217 49 16 chr11 120287229 120287290 -1556566 - ID4_ SINE ID -9 74 12 5 1502 364 285 113 23 chr11 120287685 120287818 -1556038 + B1F1 SINE Alu 3 147 -2 5 1502 389 186 43 0 chr11 120287973 120288043 -1555813 - PB1D7 SINE Alu 0 120 48 5 1502 378 257 124 59 chr11 120288460 120288613 -1555243 + RSINE1 SINE B4 3 165 0 5 1502 713 154 0 17 chr11 120288635 120288754 -1555102 - B1_Mur2 SINE Alu -2 147 31 5 1502 263 73 0 0 chr11 120289210 120289251 -1554605 + B3 SINE B2 170 210 -6 5 1502 490 296 51 36 chr11 120290308 120290445 -1553411 + RSINE1 SINE B4 7 145 -20 5 1502 402 281 56 56 chr11 120290519 120290662 -1553194 + ID_B1 SINE B4 82 224 0 5 1502 215 268 79 66 chr11 120290754 120290830 -1553026 - L2a LINE L2 -2 3424 3348 5 1502 278 309 63 24 chr11 120290895 120291021 -1552835 + YREP_Mm Unknown Unknown 156 286 -1526 5 1502 529 228 10 0 chr11 120290920 120291021 -1552835 - ID_B1 SINE B4 -11 213 112 5 1502 416 248 58 58 chr11 120291021 120291057 -1552799 - B1F SINE Alu -11 138 2 5 1502 498 75 0 0 chr11 120291103 120291170 -1552686 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1502 324 115 0 0 chr11 120291170 120291216 -1552640 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1502 264 273 149 57 chr11 120291361 120291536 -1552320 + L1MB2 LINE L1 5900 6090 -81 5 1502 262 327 77 18 chr11 120291980 120292148 -1551708 + Kanga1d DNA Tc2 324 501 -108 5 1502 1159 55 14 0 chr11 120292407 120292552 -1551304 + B1_Mus1 SINE Alu 2 148 0 5 1502 881 196 25 25 chr11 120292587 120292783 -1551073 + B3 SINE B2 2 197 -1 5 1502 696 260 115 0 chr11 120292910 120293102 -1550754 + B3 SINE B2 3 216 0 5 1502 910 65 95 16 chr11 120293114 120293240 -1550616 + B1_Mm SINE Alu 1 136 -11 5 1502 1034 38 0 8 chr11 120293240 120293372 -1550484 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 5 1502 452 216 0 133 chr11 120293389 120293517 -1550339 + B1_Mur1 SINE Alu 38 148 -1 5 1502 307 268 84 12 chr11 120293502 120293522 -1550334 + B4 SINE B4 67 129 -163 5 1502 377 140 35 0 chr11 120293522 120293579 -1550277 + B1_Mus2 SINE Alu 1 59 -88 5 1502 742 93 18 27 chr11 120293623 120293733 -1550123 + B1_Mur4 SINE Alu 41 149 -1 5 1502 245 333 133 0 chr11 120293836 120293926 -1549930 - B1F1 SINE Alu -11 138 37 5 1502 340 290 52 31 chr11 120294058 120294154 -1549702 + PB1D7 SINE Alu 7 104 -16 5 1502 281 304 41 55 chr11 120294615 120294761 -1549095 - B4A SINE B4 -148 144 1 5 1502 1102 57 0 28 chr11 120295031 120295176 -1548680 - B1_Mus2 SINE Alu -5 142 2 5 1502 372 294 33 0 chr11 120295182 120295274 -1548582 - B3 SINE B2 -4 212 118 5 1502 415 318 106 0 chr11 120295292 120295443 -1548413 + B3 SINE B2 46 212 -4 5 1502 21 36 0 0 chr11 120295448 120295476 -1548380 + AT_rich Low_complexity Low_complexity 1 28 0 5 1502 314 318 45 0 chr11 120296240 120296328 -1547528 - B1F2 SINE Alu -57 92 1 5 1502 1019 108 93 33 chr11 120296505 120296687 -1547169 + B2_Mm2 SINE B2 1 193 -2 5 1502 232 266 92 41 chr11 120296712 120296810 -1547046 + PB1 SINE Alu 25 127 0 5 1502 1409 73 6 0 chr11 120296878 120297056 -1546800 + B2_Mm1t SINE B2 1 179 -14 5 1502 231 36 0 0 chr11 120297059 120297087 -1546769 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1502 437 285 98 46 chr11 120297171 120297344 -1546512 + B3A SINE B2 5 186 -12 5 1502 588 232 134 5 chr11 120297356 120297542 -1546314 + B3 SINE B2 1 210 -6 5 1502 244 203 27 55 chr11 120297948 120298021 -1545835 + PB1D10 SINE Alu 47 117 0 5 1502 189 171 0 0 chr11 120298892 120298927 -1544929 + (CCCCAG)n Simple_repeat Simple_repeat 4 38 0 5 1502 216 86 0 0 chr11 120299397 120299432 -1544424 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1502 479 146 230 26 chr11 120299445 120299558 -1544298 - B1_Mur2 SINE Alu 0 149 14 5 1502 229 203 56 42 chr11 120299494 120299566 -1544290 - MT2B LTR ERVL -361 240 168 5 1502 753 221 14 14 chr11 120299699 120299846 -1544010 - B1_Mur4 SINE Alu -3 147 1 5 1502 875 230 16 19 chr11 120299850 120300046 -1543810 - B3 SINE B2 -8 208 31 5 1502 508 243 83 7 chr11 120300057 120300202 -1543654 - ID_B1 SINE B4 -67 157 2 5 1502 410 220 70 0 chr11 120300206 120300306 -1543550 - B1_Mus2 SINE Alu -40 107 1 5 1502 270 0 0 0 chr11 120300429 120300459 -1543397 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1502 252 0 0 0 chr11 120300459 120300486 -1543370 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1502 1189 55 0 14 chr11 120300664 120300811 -1543045 + B1_Mus2 SINE Alu 1 145 -2 5 1502 279 0 0 0 chr11 120300811 120300842 -1543014 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1502 830 175 0 0 chr11 120300852 120300989 -1542867 + B3 SINE B2 1 137 -79 5 1502 315 122 0 0 chr11 120301000 120301049 -1542807 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1502 472 350 38 0 chr11 120301055 120301212 -1542644 + RSINE1 SINE B4 3 165 0 5 1502 668 203 3 0 chr11 120301216 120301544 -1542312 + (CA)n Simple_repeat Simple_repeat 1 328 0 5 1502 843 194 14 14 chr11 120301560 120301706 -1542150 + B1_Mur2 SINE Alu 2 147 -2 5 1502 714 329 49 42 chr11 120301731 120302039 -1541817 + MTD LTR MaLR 25 334 -85 5 1502 648 159 163 23 chr11 120302189 120302318 -1541538 + B1_Mus1 SINE Alu 1 147 -1 5 1502 842 211 87 77 chr11 120302428 120302605 -1541251 + RMER16 LTR ERVK 1 290 -243 5 1502 1124 61 0 69 chr11 120302605 120302764 -1541092 - B1_Mus1 SINE Alu 0 148 1 5 1502 842 264 118 69 chr11 120302764 120303013 -1540843 + RMER16 LTR ERVK 291 533 0 5 1502 321 26 0 0 chr11 120303033 120303071 -1540785 + (CTG)n Simple_repeat Simple_repeat 1 38 0 5 1502 324 70 0 0 chr11 120303384 120303427 -1540429 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1502 525 141 0 0 chr11 120307187 120307286 -1536570 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1502 471 35 0 0 chr11 120307286 120307343 -1536513 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 1502 667 255 50 27 chr11 120308419 120308637 -1535219 - ID_B1 SINE B4 -46 246 17 5 1502 260 308 118 21 chr11 120310198 120310291 -1533565 + MLT1A1 LTR MaLR 2 103 -305 5 1502 1370 51 79 0 chr11 120310305 120310483 -1533373 + B2_Mm1a SINE B2 1 192 -1 5 1502 1414 70 27 0 chr11 120310503 120310688 -1533168 + B2_Mm2 SINE B2 3 192 -3 5 1502 1458 67 0 44 chr11 120310729 120310933 -1532923 - B2_Mm2 SINE B2 0 195 1 5 1502 252 279 138 62 chr11 120311101 120311231 -1532625 + MLT1A1 LTR MaLR 269 408 0 5 1502 185 292 108 0 chr11 120312441 120312506 -1531350 + L2 LINE L2 39 110 -3309 5 1502 383 52 17 0 chr11 120312564 120312622 -1531234 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 5 1502 1172 85 41 92 chr11 120312622 120312772 -1531084 - B2_Mm2 SINE B2 -10 185 28 5 1502 253 0 54 0 chr11 120312772 120312809 -1531047 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1502 1036 76 0 105 chr11 120312809 120312908 -1530948 - B1_Mur3 SINE Alu -2 147 64 5 1502 1613 42 5 0 chr11 120312908 120313099 -1530757 + B2_Mm1a SINE B2 1 192 -1 5 1502 1036 76 0 105 chr11 120313099 120313161 -1530695 - B1_Mur3 SINE Alu -86 63 3 5 1502 1172 85 41 92 chr11 120313161 120313204 -1530652 - B2_Mm2 SINE B2 -168 27 2 5 1502 1017 127 0 0 chr11 120313213 120313355 -1530501 - B1_Mus1 SINE Alu -6 142 1 5 1502 1233 55 7 0 chr11 120315406 120315552 -1528304 - B1_Mm SINE Alu 0 147 1 5 1502 246 105 0 0 chr11 120315562 120315600 -1528256 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1502 1051 86 0 0 chr11 120315600 120315740 -1528116 - B1_Mus1 SINE Alu 0 148 9 5 1502 621 250 35 7 chr11 120315742 120315883 -1527973 - ID_B1 SINE B4 0 224 80 5 1502 354 281 249 12 chr11 120316135 120316304 -1527552 - RMER15 LTR ERVL -14 561 353 5 1502 785 146 46 8 chr11 120316311 120316442 -1527414 + B1_Mur3 SINE Alu 1 136 -13 5 1502 467 183 181 9 chr11 120316478 120316583 -1527273 + B1_Mm SINE Alu 9 131 -16 5 1502 283 274 81 55 chr11 120316594 120316815 -1527041 - RMER15 LTR ERVL -212 363 23 5 1502 1182 55 7 20 chr11 120317051 120317200 -1526656 + B1_Mus1 SINE Alu 2 148 0 5 1502 1453 69 5 5 chr11 120317217 120317407 -1526449 + B2_Mm1a SINE B2 2 191 -2 5 1502 1246 41 7 0 chr11 120318613 120318760 -1525096 - B1_Mus1 SINE Alu 0 148 1 5 1502 1144 134 36 46 chr11 120320252 120320448 -1523408 - B2_Mm2 SINE B2 -1 194 1 5 1502 1206 61 0 7 chr11 120320476 120320625 -1523231 - B1_Mus1 SINE Alu 0 148 1 5 1502 388 264 30 127 chr11 120320630 120320795 -1523061 - B3A SINE B2 0 198 50 5 1502 547 196 73 8 chr11 120320806 120320969 -1522887 - B3 SINE B2 -8 187 2 5 1502 265 303 92 0 chr11 120321004 120321113 -1522743 - PB1D9 SINE Alu 0 120 2 5 1502 1205 57 0 0 chr11 120321721 120321862 -1521994 - B1_Mm SINE Alu -5 142 2 5 1502 1223 54 0 0 chr11 120321920 120322067 -1521789 - B1_Mm SINE Alu 0 147 1 5 1502 204 217 0 0 chr11 120322640 120322686 -1521170 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1503 402 216 118 0 chr11 120325760 120325862 -1517994 - PB1D10 SINE Alu 0 117 4 5 1503 372 279 25 13 chr11 120325877 120325972 -1517884 - 7SLRNA srpRNA srpRNA -52 97 1 5 1503 242 307 0 74 chr11 120325900 120325981 -1517875 - B4A SINE B4 -136 156 82 5 1503 569 182 148 24 chr11 120326002 120326171 -1517685 - B2_Mm2 SINE B2 -4 191 2 5 1503 28 0 0 0 chr11 120326181 120326209 -1517647 + AT_rich Low_complexity Low_complexity 1 28 0 6 1503 405 76 37 5 chr11 120326221 120326284 -1517572 - B2_Mm2 SINE B2 -107 109 47 6 1503 982 113 7 0 chr11 120326290 120326431 -1517425 - B2_Mm1a SINE B2 -45 148 7 6 1503 1157 68 0 14 chr11 120326451 120326599 -1517257 - B1_Mus2 SINE Alu 0 147 2 6 1503 349 211 39 26 chr11 120327514 120327592 -1516264 - ID4_ SINE ID -4 79 1 6 1503 575 264 112 120 chr11 120330591 120330820 -1513036 + ID_B1 SINE B4 12 234 -58 6 1503 775 212 111 30 chr11 120333333 120333532 -1510324 - B3 SINE B2 0 216 2 6 1503 237 175 267 11 chr11 120334066 120334155 -1509701 + B1F SINE Alu 11 115 -5 6 1503 216 0 0 0 chr11 120334378 120334402 -1509454 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1503 452 152 133 0 chr11 120334402 120334560 -1509296 - RMER17C LTR ERVK -135 275 97 6 1503 740 164 20 14 chr11 120334590 120334738 -1509118 + B1_Mur4 SINE Alu 1 149 -1 6 1503 1200 48 0 20 chr11 120334741 120334876 -1508980 + B1_Mus1 SINE Alu 3 137 -11 6 1503 289 40 39 20 chr11 120334876 120334927 -1508929 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 1503 1200 48 0 20 chr11 120334927 120334939 -1508917 + B1_Mus1 SINE Alu 138 147 -1 6 1503 901 104 81 7 chr11 120335030 120335166 -1508690 - B1_Mur3 SINE Alu -1 148 3 6 1503 615 214 7 85 chr11 120335197 120335350 -1508506 + B1_Mur2 SINE Alu 2 142 -7 6 1503 1419 85 37 0 chr11 120336093 120336281 -1507575 - B2_Mm2 SINE B2 0 195 1 6 1503 928 147 21 0 chr11 120337004 120337147 -1506709 + B1_Mus1 SINE Alu 1 146 -2 6 1503 1700 26 0 0 chr11 120337167 120337357 -1506499 - B2_Mm1a SINE B2 -2 191 2 6 1503 2365 73 32 65 chr11 120337683 120337959 -1505897 + ORR1A2 LTR MaLR 1 272 -55 6 1503 1181 55 7 20 chr11 120337959 120338108 -1505748 + B1_Mm SINE Alu 1 147 0 6 1503 2365 73 32 65 chr11 120338108 120338169 -1505687 + ORR1A2 LTR MaLR 273 327 0 6 1503 224 149 21 0 chr11 120341631 120341678 -1502178 + CT-rich Low_complexity Low_complexity 2 49 0 6 1503 799 134 15 15 chr11 120342190 120342326 -1501530 - B1_Mus1 SINE Alu 0 148 13 6 1503 751 226 51 83 chr11 120342340 120342557 -1501299 - B3 SINE B2 -6 210 1 6 1503 668 197 0 25 chr11 120342583 120342703 -1501153 - PB1D9 SINE Alu -1 119 3 6 1503 481 318 62 0 chr11 120342708 120342887 -1500969 - B3A SINE B2 0 198 9 6 1503 229 202 21 125 chr11 120343060 120343094 -1500762 - YREP_Mm Unknown Unknown -1478 334 250 6 1503 271 217 98 16 chr11 120343094 120343155 -1500701 + PB1D10 SINE Alu 10 75 -42 6 1503 438 20 0 0 chr11 120343217 120343268 -1500588 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1503 311 316 0 0 chr11 120343524 120343603 -1500253 + ID4_ SINE ID 3 81 -2 6 1503 240 35 0 0 chr11 120343617 120343646 -1500210 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1503 219 69 0 0 chr11 120343664 120343693 -1500163 + (CACCC)n Simple_repeat Simple_repeat 2 30 0 6 1503 252 272 76 34 chr11 120343694 120343812 -1500044 - L1MC4a LINE L1 -1683 6199 6077 6 1503 238 294 99 18 chr11 120347233 120347344 -1496512 - RSINE1 SINE B4 -1 164 45 6 1503 1505 53 5 5 chr11 120347641 120347830 -1496026 - B2_Mm1a SINE B2 -3 190 2 6 1503 933 138 51 0 chr11 120347861 120347999 -1495857 + B1_Mus1 SINE Alu 1 145 -3 6 1503 490 270 18 0 chr11 120348022 120348133 -1495723 + PB1D9 SINE Alu 2 114 -6 6 1503 722 238 17 6 chr11 120348146 120348319 -1495537 - B3A SINE B2 -22 176 2 6 1503 496 208 108 31 chr11 120348481 120348610 -1495246 + B1_Mur3 SINE Alu 1 139 -10 6 1503 188 0 74 0 chr11 120348763 120348790 -1495066 + (CGTG)n Simple_repeat Simple_repeat 2 30 0 6 1503 681 301 33 9 chr11 120348810 120349021 -1494835 - B4 SINE B4 -53 239 24 6 1503 892 130 36 7 chr11 120349059 120349198 -1494658 + B1_Mur4 SINE Alu 1 143 -7 6 1503 463 186 30 30 chr11 120350241 120350341 -1493515 - B1_Mus2 SINE Alu -12 135 36 6 1503 21 36 0 0 chr11 120353163 120353191 -1490665 + GC_rich Low_complexity Low_complexity 1 28 0 6 1503 315 0 0 0 chr11 120354125 120354160 -1489696 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1503 217 262 259 12 chr11 120354471 120354552 -1489304 - ID_B1 SINE B4 -26 198 98 6 1503 429 263 20 0 chr11 120355029 120355128 -1488728 - PB1D10 SINE Alu 0 117 17 6 1503 255 130 0 0 chr11 120357468 120357522 -1486334 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1503 268 128 21 37 chr11 120357543 120357607 -1486249 - PB1D7 SINE Alu -3 146 67 6 1503 267 174 0 189 chr11 120361234 120361344 -1482512 + B1_Mur1 SINE Alu 59 146 -3 6 1503 401 250 117 33 chr11 120362310 120362430 -1481426 + B4A SINE B4 163 292 0 6 1503 264 328 43 0 chr11 120362444 120362560 -1481296 + L1M4 LINE L1 4899 5019 -1127 6 1503 366 231 172 69 chr11 120362571 120362687 -1481169 + B3A SINE B2 2 129 -69 6 1503 232 174 32 21 chr11 120362794 120362888 -1480968 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1503 266 320 104 0 chr11 120363212 120363337 -1480519 - MER89 LTR ERV1 -254 305 168 6 1503 285 216 65 39 chr11 120363394 120363471 -1480385 - ID2 SINE ID -3 80 2 6 1503 822 161 6 45 chr11 120363514 120363670 -1480186 - B1_Mur4 SINE Alu 0 150 1 6 1503 1029 77 33 47 chr11 120363700 120363850 -1480006 + B1_Mus1 SINE Alu 1 148 0 6 1503 512 339 16 16 chr11 120363873 120364059 -1479797 - B3A SINE B2 -11 187 2 6 1503 207 0 0 0 chr11 120364065 120364088 -1479768 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 6 1503 664 213 24 0 chr11 120364101 120364228 -1479628 + B3 SINE B2 1 130 -86 6 1503 422 311 0 25 chr11 120364488 120364610 -1479246 - B1F SINE Alu -10 139 21 6 1503 1881 149 93 58 chr11 120364683 120365082 -1478774 - MTC LTR MaLR -8 413 1 6 1503 422 202 22 0 chr11 120365082 120365168 -1478688 - PB1D10 SINE Alu -18 99 12 6 1503 317 273 148 8 chr11 120365201 120365323 -1478533 - B1_Mur4 SINE Alu -11 139 1 6 1503 944 229 44 19 chr11 120365362 120365567 -1478289 + B3 SINE B2 1 210 -6 6 1503 780 130 7 58 chr11 120365607 120365746 -1478110 + B1_Mus2 SINE Alu 16 147 0 6 1503 273 306 130 85 chr11 120366073 120366273 -1477583 + RMER15 LTR ERVL 338 546 -29 6 1503 1197 68 0 0 chr11 120366367 120366514 -1477342 - B1_Mus2 SINE Alu 0 147 1 6 1503 318 80 0 0 chr11 120366531 120366581 -1477275 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 6 1503 1132 77 0 7 chr11 120366581 120366719 -1477137 - B1_Mus1 SINE Alu -4 144 7 6 1503 765 224 76 11 chr11 120366739 120366924 -1476932 - B3A SINE B2 -1 197 1 6 1503 477 264 16 0 chr11 120366990 120367111 -1476745 - RSINE1 SINE B4 -40 125 3 6 1503 492 181 284 0 chr11 120367135 120367251 -1476605 - B1_Mur3 SINE Alu 0 149 1 6 1503 1112 91 0 0 chr11 120367461 120367604 -1476252 - B1_Mus2 SINE Alu 0 147 5 6 1503 1744 147 98 20 chr11 120368501 120368849 -1475007 - RLTR14 LTR ERV1 0 382 8 6 1503 229 109 43 0 chr11 120369283 120369329 -1474527 + GA-rich Low_complexity Low_complexity 4 51 0 6 1503 488 215 8 47 chr11 120369596 120369723 -1474133 - B1_Mur1 SINE Alu -18 131 10 6 1503 1756 221 51 51 chr11 120369730 120370236 -1473620 + RMER19C LTR ERVK 106 611 0 6 1503 2672 140 142 42 chr11 120370243 120370312 -1473544 + RMER4B LTR ERVK 4 67 -518 6 1503 1538 53 37 0 chr11 120370312 120370500 -1473356 + B2_Mm2 SINE B2 1 195 0 6 1503 2672 140 142 42 chr11 120370500 120370959 -1472897 + RMER4B LTR ERVK 68 585 0 6 1503 838 197 135 11 chr11 120371004 120371189 -1472667 - B3 SINE B2 -7 209 2 6 1503 266 246 179 18 chr11 120371810 120371828 -1472028 + B1F SINE Alu 1 130 -19 6 1503 279 233 128 43 chr11 120371828 120371922 -1471934 + ID_B1 SINE B4 104 205 -19 6 1503 575 202 207 6 chr11 120372002 120372171 -1471685 - MTD LTR MaLR -31 388 186 6 1503 788 30 0 10 chr11 120372394 120372494 -1471362 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 6 1503 261 247 86 0 chr11 120372598 120372691 -1471165 - MTD LTR MaLR -209 210 110 6 1503 1168 41 20 7 chr11 120372694 120372840 -1471016 + B1_Mus1 SINE Alu 1 148 0 6 1503 1076 232 72 63 chr11 120372906 120373224 -1470632 - MTC-int LTR MaLR -418 840 520 6 1503 735 176 73 0 chr11 120373227 120373363 -1470493 + B1_Mur4 SINE Alu 3 148 -2 6 1503 463 190 69 10 chr11 120373384 120373485 -1470371 + B1_Mur1 SINE Alu 34 140 -9 6 1503 315 261 0 0 chr11 120373543 120373612 -1470244 - MTC-int LTR MaLR -747 511 443 6 1503 382 281 93 7 chr11 120373614 120373754 -1470102 - L1MEc LINE L1 -4123 2277 2126 6 1503 341 217 26 78 chr11 120373766 120373881 -1469975 - MTC-int LTR MaLR -802 456 348 6 1503 517 141 29 57 chr11 120373836 120373941 -1469915 - PB1D9 SINE Alu -1 119 18 6 1503 644 211 47 20 chr11 120373962 120374112 -1469744 - B3 SINE B2 -5 211 58 6 1503 733 156 94 22 chr11 120374755 120374893 -1468963 + B1_Mur4 SINE Alu 3 150 0 6 1503 253 62 20 20 chr11 120374893 120374942 -1468914 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 6 1503 365 239 17 9 chr11 120375168 120375404 -1468452 + (TG)n Simple_repeat Simple_repeat 1 238 0 6 1503 571 244 48 75 chr11 120375406 120375592 -1468264 - B4A SINE B4 0 292 112 6 1503 476 276 147 18 chr11 120375590 120375778 -1468078 - ID_B1 SINE B4 -1 223 10 6 1503 1376 102 0 5 chr11 120375803 120375991 -1467865 + B2_Mm2 SINE B2 1 187 -8 6 1503 769 260 104 101 chr11 120376137 120376454 -1467402 + Lx5 LINE L1 6760 7042 -8 6 1503 234 0 0 0 chr11 120376470 120376496 -1467360 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1503 554 142 142 0 chr11 120376508 120376621 -1467235 + B1_Mus2 SINE Alu 18 146 -1 7 1503 186 71 0 0 chr11 120376622 120376650 -1467206 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1503 861 180 40 17 chr11 120376661 120376861 -1466995 - B3 SINE B2 -5 211 7 7 1503 1435 226 101 16 chr11 120377658 120378044 -1465812 + MTD LTR MaLR 1 419 0 7 1503 225 196 0 0 chr11 120378338 120378394 -1465462 + T-rich Low_complexity Low_complexity 1 56 0 7 1503 467 72 0 28 chr11 120378394 120378465 -1465391 - B1_Mus2 SINE Alu 0 147 79 7 1503 330 88 330 9 chr11 120378795 120378904 -1464952 - B2_Mm2 SINE B2 -5 190 47 7 1503 26 30 0 0 chr11 120378959 120378992 -1464864 + AT_rich Low_complexity Low_complexity 1 33 0 7 1503 1261 106 22 11 chr11 120379009 120379190 -1464666 - B2_Mm1t SINE B2 -10 183 1 7 1503 460 192 0 0 chr11 120379232 120379310 -1464546 - RMER6B LTR ERVK -13 448 371 7 1503 971 255 186 15 chr11 120379849 120380176 -1463680 + Lx8 LINE L1 6943 7325 -148 7 1503 789 169 73 7 chr11 120380531 120380668 -1463188 - B1_Mus1 SINE Alu -2 146 1 7 1503 531 211 13 0 chr11 120380705 120380815 -1463041 + B1_Mur4 SINE Alu 1 120 -30 7 1503 267 31 0 0 chr11 120380819 120380851 -1463005 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 7 1503 562 231 0 0 chr11 120380873 120380981 -1462875 + PB1D7 SINE Alu 13 120 0 7 1503 230 273 250 0 chr11 120381087 120381215 -1462641 - L1MB2 LINE L1 -57 6114 5955 7 1503 302 292 26 26 chr11 120381545 120381661 -1462195 + B3 SINE B2 1 116 -100 7 1503 686 212 66 4 chr11 120382890 120383055 -1460801 + B3A SINE B2 34 206 -10 7 1503 1026 133 0 0 chr11 120383058 120383201 -1460655 + B1_Mus1 SINE Alu 1 143 -5 7 1503 503 165 19 0 chr11 120383218 120383321 -1460535 + GA-rich Low_complexity Low_complexity 2 106 0 7 1503 408 285 68 27 chr11 120383377 120383525 -1460331 + RSINE1 SINE B4 8 161 -4 7 1503 856 200 0 0 chr11 120383575 120383715 -1460141 + B1_Mur2 SINE Alu 1 140 -9 7 1503 252 0 0 0 chr11 120383715 120383743 -1460113 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1503 1135 75 0 20 chr11 120383843 120383993 -1459863 + B1_Mus2 SINE Alu 1 147 0 7 1503 198 43 41 61 chr11 120383993 120384042 -1459814 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 7 1503 229 315 36 9 chr11 120384045 120384157 -1459699 + L1M4 LINE L1 4077 4191 -1955 7 1503 325 261 126 34 chr11 120384343 120384462 -1459394 + LSU-rRNA_Hsa rRNA rRNA 3654 3783 -1252 7 1503 908 130 0 64 chr11 120384632 120384788 -1459068 + B1_Mus1 SINE Alu 2 147 -1 7 1503 648 88 14 0 chr11 120384932 120385058 -1458798 - B1_Mus1 SINE Alu -18 131 1 7 1503 266 323 86 0 chr11 120385075 120385168 -1458688 + PB1D10 SINE Alu 1 101 -16 7 1503 505 285 15 47 chr11 120385175 120385335 -1458521 + ID_B1 SINE B4 76 222 -2 7 1503 709 224 162 0 chr11 120385349 120385528 -1458328 + Lx7 LINE L1 6649 6856 -840 7 1503 861 194 0 12 chr11 120385530 120385692 -1458164 + B2_Mm2 SINE B2 1 160 -35 7 1503 262 221 91 0 chr11 120385692 120385769 -1458087 + Lx7 LINE L1 6850 6933 -763 7 1503 887 189 0 0 chr11 120385772 120385920 -1457936 - B1_Mur4 SINE Alu 0 150 3 7 1503 502 241 95 0 chr11 120385923 120386039 -1457817 - B1F SINE Alu -22 127 1 7 1503 318 313 43 9 chr11 120386077 120386193 -1457663 + PB1 SINE Alu 1 120 -7 7 1503 702 230 115 44 chr11 120386205 120386387 -1457469 - B3A SINE B2 0 198 4 7 1503 828 202 179 33 chr11 120386421 120386605 -1457251 - B3 SINE B2 -5 211 1 7 1503 1197 205 186 0 chr11 120386629 120386941 -1456915 - ORR1D2 LTR MaLR 0 370 1 7 1503 1199 55 0 7 chr11 120387001 120387149 -1456707 + B1_Mus2 SINE Alu 1 147 0 7 1503 3726 132 92 39 chr11 120387158 120387875 -1455981 + RMER6A LTR ERVK 2 756 0 7 1503 315 380 19 26 chr11 120387955 120388109 -1455747 - RSINE1 SINE B4 0 165 13 7 1503 333 0 0 0 chr11 120388124 120388161 -1455695 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1503 552 292 35 29 chr11 120388389 120388562 -1455294 + B3A SINE B2 18 191 -7 7 1503 423 0 0 0 chr11 120388563 120388610 -1455246 + (TA)n Simple_repeat Simple_repeat 2 48 0 7 1503 274 323 9 66 chr11 120388628 120388734 -1455122 + PB1D7 SINE Alu 1 100 -20 7 1503 281 181 165 24 chr11 120388728 120388813 -1455043 + ID_B1 SINE B4 128 224 0 7 1503 439 286 33 103 chr11 120388854 120389068 -1454788 + ID_B1 SINE B4 10 208 -16 7 1503 468 0 0 0 chr11 120389527 120389579 -1454277 + (TTAGGG)n Simple_repeat Simple_repeat 2 53 0 7 1503 431 300 21 28 chr11 120389668 120389812 -1454044 - RSINE1 SINE B4 -2 163 21 7 1503 376 242 22 11 chr11 120389805 120389897 -1453959 - B4A SINE B4 -199 93 1 7 1503 212 157 0 56 chr11 120391941 120391995 -1451861 + C-rich Low_complexity Low_complexity 4 54 0 7 1503 838 123 7 14 chr11 120394063 120394203 -1449653 - B1_Mus2 SINE Alu 0 147 9 7 1503 434 294 0 0 chr11 120394925 120395027 -1448829 - PB1D9 SINE Alu -18 102 1 7 1503 2368 120 3 0 chr11 120395154 120395480 -1448376 - ORR1A2 LTR MaLR 0 327 1 7 1503 304 348 25 25 chr11 120396987 120397105 -1446751 + HAL1-3A_ME LINE L1 1972 2089 -769 7 1503 275 260 78 68 chr11 120401936 120402039 -1441817 + ID_B1 SINE B4 106 209 -15 7 1503 565 175 29 0 chr11 120402045 120402148 -1441708 + PB1D9 SINE Alu 14 119 -1 7 1503 458 254 68 82 chr11 120402168 120402387 -1441469 + B4 SINE B4 2 217 -75 7 1503 477 0 0 0 chr11 120402414 120402467 -1441389 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1503 595 0 27 0 chr11 120402467 120402541 -1441315 + (GA)n Simple_repeat Simple_repeat 2 78 0 7 1503 489 256 243 6 chr11 120402672 120402853 -1441003 + ID_B1 SINE B4 1 224 0 7 1503 431 335 30 65 chr11 120402867 120403024 -1440832 + B3A SINE B2 2 152 -46 7 1503 587 235 29 57 chr11 120403024 120403164 -1440692 + B1_Mur1 SINE Alu 1 136 -13 7 1503 431 335 30 65 chr11 120403164 120403207 -1440649 + B3A SINE B2 153 195 -3 7 1503 290 219 11 58 chr11 120405448 120405535 -1438321 - PB1D9 SINE Alu 0 120 38 7 1503 318 252 46 243 chr11 120407958 120408131 -1435725 - ID_B1 SINE B4 -2 222 84 7 1503 246 263 35 0 chr11 120408218 120408275 -1435581 - ID4 SINE ID -22 61 3 7 1503 213 39 0 0 chr11 120408388 120408414 -1435442 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1503 390 42 0 0 chr11 120408414 120408461 -1435395 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1503 781 84 244 0 chr11 120408529 120408648 -1435208 - B1_Mus1 SINE Alu 0 148 1 7 1503 1059 156 127 0 chr11 120408908 120409120 -1434736 + RLTR42 LTR ERVK 1 239 0 7 1503 374 280 28 9 chr11 120410100 120410208 -1433648 - PB1D10 SINE Alu -7 110 1 7 1503 189 0 0 0 chr11 120410886 120410907 -1432949 + (CGGGG)n Simple_repeat Simple_repeat 3 23 0 7 1503 249 33 0 0 chr11 120410981 120411011 -1432845 + (CCG)n Simple_repeat Simple_repeat 3 32 0 7 1503 375 291 180 15 chr11 120413326 120413532 -1430324 - MLT1C LTR MaLR -46 421 182 7 1503 294 228 34 102 chr11 120413691 120413779 -1430077 - PB1D10 SINE Alu -35 82 1 7 1503 626 168 104 30 chr11 120413891 120414008 -1429848 + B1_Mur2 SINE Alu 1 120 -29 7 1503 441 0 0 0 chr11 120414008 120414057 -1429799 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1503 626 168 104 30 chr11 120414057 120414074 -1429782 + B1_Mur2 SINE Alu 121 144 -5 7 1503 220 279 132 0 chr11 120415095 120415163 -1428693 + ID_B1 SINE B4 78 154 -70 7 1503 189 0 0 0 chr11 120415226 120415247 -1428609 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1503 1045 52 237 6 chr11 120415259 120415415 -1428441 - B2_Mm2 SINE B2 -1 194 3 7 1503 555 205 131 0 chr11 120415415 120415537 -1428319 - B1_Mur4 SINE Alu -11 139 2 7 1503 598 132 78 16 chr11 120415570 120415693 -1428163 + B1_Mur3 SINE Alu 9 145 -4 7 1503 486 61 0 0 chr11 120415695 120415761 -1428095 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 7 1503 426 258 0 0 chr11 120415908 120416014 -1427842 + B1F SINE Alu 17 122 -27 7 1503 1179 99 65 11 chr11 120417388 120417546 -1426310 + B2_Mm2 SINE B2 2 171 -24 7 1503 204 40 0 0 chr11 120417546 120417571 -1426285 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 7 1503 3364 35 25 2 chr11 120417571 120417973 -1425883 + IAPLTR2a LTR ERVK 1 411 0 7 1503 1179 99 65 11 chr11 120417973 120417997 -1425859 + B2_Mm2 SINE B2 172 194 -1 7 1503 3362 156 126 40 chr11 120418022 120418323 -1425533 + RMER6D LTR ERVK 1 314 -406 7 1503 1435 89 5 5 chr11 120418323 120418514 -1425342 + B2_Mm2 SINE B2 3 193 -2 7 1503 3362 156 126 40 chr11 120418514 120418871 -1424985 + RMER6D LTR ERVK 315 716 -4 7 1503 1311 102 11 0 chr11 120418882 120419068 -1424788 - B2_Mm1t SINE B2 -5 188 1 7 1503 214 130 217 0 chr11 120419075 120419121 -1424735 - PB1D10 SINE Alu -3 114 59 7 1503 472 302 84 0 chr11 120419082 120419201 -1424655 - ID_B1 SINE B4 -17 207 79 7 1503 576 216 93 36 chr11 120419202 120419341 -1424515 - B1_Mur2 SINE Alu -1 148 2 7 1503 254 264 280 9 chr11 120419406 120419513 -1424343 + B3 SINE B2 3 138 -78 7 1503 916 160 46 127 chr11 120419517 120419711 -1424145 - RLTR31B_Mm LTR ERVK 0 557 273 7 1503 1133 75 0 14 chr11 120419711 120419859 -1423997 - B1_Mus2 SINE Alu 0 147 2 7 1503 916 159 53 146 chr11 120419859 120419870 -1423986 - RLTR31B_Mm LTR ERVK -285 272 272 7 1503 1089 27 306 0 chr11 120419870 120420017 -1423839 - B2_Mm1a SINE B2 -1 192 1 7 1503 916 159 53 146 chr11 120420017 120420137 -1423719 - RLTR31B_Mm LTR ERVK -285 272 150 7 1503 1130 79 0 0 chr11 120420147 120420287 -1423569 - B1_Mus2 SINE Alu -6 141 2 7 1503 1297 93 49 0 chr11 120420311 120420494 -1423362 - B2_Mm1t SINE B2 0 193 2 8 1503 396 144 239 18 chr11 120420527 120420640 -1423216 + B1_Mur3 SINE Alu 12 149 0 8 1503 464 309 147 16 chr11 120420914 120421105 -1422751 - ID_B1 SINE B4 -8 216 1 8 1503 1140 69 14 0 chr11 120421127 120421271 -1422585 - B1_Mus1 SINE Alu -1 147 2 8 1503 611 98 312 0 chr11 120421346 120421458 -1422398 - B1_Mus1 SINE Alu 0 148 2 8 1503 589 207 41 0 chr11 120423168 120423289 -1420567 + B1_Mus1 SINE Alu 1 126 -22 8 1503 386 129 32 0 chr11 120425597 120425659 -1418197 + B3 SINE B2 1 64 -152 8 1503 573 107 0 0 chr11 120425650 120425734 -1418122 + B1_Mur4 SINE Alu 67 150 0 8 1503 236 185 0 0 chr11 120425734 120425788 -1418068 + A-rich Low_complexity Low_complexity 1 54 0 8 1503 340 250 124 9 chr11 120425794 120425907 -1417949 - MER2 DNA MER2_type -150 195 70 8 1503 519 270 9 0 chr11 120425971 120426086 -1417770 - PB1D10 SINE Alu -1 116 1 8 1503 330 295 32 0 chr11 120426205 120426300 -1417556 + B3A SINE B2 28 125 -73 8 1503 306 240 121 30 chr11 120427188 120427287 -1416569 + ID_B1 SINE B4 117 224 0 8 1503 233 264 167 0 chr11 120427311 120427383 -1416473 + B3 SINE B2 14 97 -119 8 1503 288 228 25 0 chr11 120427992 120428071 -1415785 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1503 693 188 21 35 chr11 120428213 120428356 -1415500 - B1_Mus1 SINE Alu -5 143 3 8 1503 514 253 74 19 chr11 120428697 120428853 -1415003 + B3 SINE B2 6 181 -12 8 1503 595 283 7 7 chr11 120428854 120429000 -1414856 + B1F SINE Alu 2 147 -2 8 1503 1156 56 167 0 chr11 120430355 120430517 -1413339 + B2_Mm2 SINE B2 1 189 -6 8 1503 354 196 259 9 chr11 120430517 120430625 -1413231 - B1_Mur3 SINE Alu -1 146 12 8 1503 1651 31 5 10 chr11 120430625 120430819 -1413037 + B2_Mm1t SINE B2 1 193 0 8 1503 1107 42 6 83 chr11 120430883 120430923 -1412933 + B1_Mus1 SINE Alu 2 41 -107 8 1503 1659 27 0 16 chr11 120430923 120431114 -1412742 + B2_Mm1t SINE B2 1 188 -5 8 1503 1107 42 6 83 chr11 120431114 120431229 -1412627 + B1_Mus1 SINE Alu 42 145 -3 8 1503 180 0 0 0 chr11 120431229 120431249 -1412607 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 8 1503 688 203 37 15 chr11 120431265 120431400 -1412456 + B3A SINE B2 1 138 -60 8 1503 222 368 63 0 chr11 120431468 120431563 -1412293 - ID_B1 SINE B4 -113 111 11 8 1503 1187 55 7 0 chr11 120431721 120431867 -1411989 - B1_Mm SINE Alu 0 147 1 8 1503 669 164 39 85 chr11 120431870 120432023 -1411833 - B1_Mus1 SINE Alu 0 148 3 8 1503 183 186 0 0 chr11 120432147 120432190 -1411666 + (TATG)n Simple_repeat Simple_repeat 2 44 0 8 1503 398 228 22 0 chr11 120432190 120432282 -1411574 - B1_Mur3 SINE Alu -55 94 1 8 1503 247 295 34 122 chr11 120432282 120432339 -1411517 - MT2B LTR ERVL -444 157 114 8 1503 289 293 36 68 chr11 120435149 120435276 -1408580 - B1F SINE Alu -20 130 4 8 1503 651 187 94 29 chr11 120435548 120435686 -1408170 - B1_Mus1 SINE Alu 0 148 2 8 1503 553 204 34 40 chr11 120436103 120436119 -1407737 + ID_B1 SINE B4 77 221 -1 8 1503 738 131 77 0 chr11 120436119 120436249 -1407607 + B1_Mur3 SINE Alu 10 149 0 8 1503 407 204 0 41 chr11 120436363 120436469 -1407387 - B1F SINE Alu -31 117 19 8 1503 276 157 0 0 chr11 120436484 120436535 -1407321 + ID_B1 SINE B4 174 224 0 8 1503 1266 88 53 0 chr11 120436862 120437032 -1406824 + B2_Mm2 SINE B2 2 180 -15 8 1503 1016 60 105 0 chr11 120437033 120437166 -1406690 + B1_Mm SINE Alu 1 147 0 8 1503 26 30 0 0 chr11 120437166 120437199 -1406657 + AT_rich Low_complexity Low_complexity 1 33 0 8 1503 42 112 0 0 chr11 120442563 120442759 -1401097 + GC_rich Low_complexity Low_complexity 1 196 0 8 1503 350 207 24 49 chr11 120443296 120443423 -1400433 - B1_Mur4 SINE Alu -19 130 2 8 1503 296 250 19 111 chr11 120443423 120443450 -1400406 - ID SINE ID -150 74 58 8 1503 790 217 59 29 chr11 120444154 120444358 -1399498 - B3 SINE B2 -4 212 3 8 1503 25 0 0 0 chr11 120444463 120444488 -1399368 + AT_rich Low_complexity Low_complexity 1 25 0 8 1503 1197 48 14 0 chr11 120444488 120444633 -1399223 - B1_Mus1 SINE Alu 0 148 2 8 1503 1270 84 84 0 chr11 120444705 120444883 -1398973 + B2_Mm1a SINE B2 1 193 0 8 1503 812 201 203 16 chr11 120444896 120445078 -1398778 + B3 SINE B2 1 216 0 8 1503 45 19 0 0 chr11 120445107 120445159 -1398697 + AT_rich Low_complexity Low_complexity 1 52 0 8 1503 417 241 25 133 chr11 120445163 120445321 -1398535 + B1_Mur4 SINE Alu 4 144 -6 8 1503 186 103 0 0 chr11 120445324 120445353 -1398503 + (TAGG)n Simple_repeat Simple_repeat 2 30 0 8 1503 664 204 17 157 chr11 120445372 120445539 -1398317 + B3 SINE B2 35 207 -9 8 1503 485 132 298 0 chr11 120445539 120445653 -1398203 + B1_Mus1 SINE Alu 1 148 0 8 1503 400 204 17 160 chr11 120445653 120445669 -1398187 + B2_Mm1t SINE B2 180 192 -1 8 1503 218 174 0 0 chr11 120445677 120445691 -1398165 + A-rich Low_complexity Low_complexity 2 15 0 8 1503 1402 95 26 0 chr11 120445691 120445880 -1397976 + B2_Mm2 SINE B2 2 195 0 8 1503 218 174 0 0 chr11 120445880 120445911 -1397945 + A-rich Low_complexity Low_complexity 16 46 0 8 1503 1502 63 21 0 chr11 120446108 120446298 -1397558 - B2_Mm2 SINE B2 0 195 2 8 1503 1247 82 16 32 chr11 120446303 120446493 -1397363 - B2_Mm2 SINE B2 -3 192 6 8 1503 306 243 14 27 chr11 120446505 120446607 -1397249 - MLT1A0 LTR MaLR -257 117 18 8 1503 433 194 73 31 chr11 120446743 120446839 -1397017 - B1_Mus2 SINE Alu -1 146 47 8 1503 393 154 154 0 chr11 120446837 120446915 -1396941 - B1_Mur2 SINE Alu -26 123 34 8 1503 324 314 36 36 chr11 120446925 120447064 -1396792 - B3A SINE B2 -4 194 56 8 1503 347 305 10 31 chr11 120447164 120447262 -1396594 + ID_B1 SINE B4 91 186 -38 8 1503 1102 89 0 20 chr11 120447500 120447649 -1396207 - B1_Mus1 SINE Alu 0 148 3 8 1503 886 189 76 0 chr11 120447974 120448159 -1395697 + B3 SINE B2 16 214 -2 8 1503 301 280 2 20 chr11 120448154 120448237 -1395619 + B4A SINE B4 43 122 -170 8 1503 421 182 199 62 chr11 120448300 120448446 -1395410 + B4A SINE B4 127 292 0 8 1503 21 57 0 0 chr11 120448542 120448577 -1395279 + AT_rich Low_complexity Low_complexity 1 35 0 8 1503 202 260 0 0 chr11 120448679 120448729 -1395127 + (CAGGG)n Simple_repeat Simple_repeat 5 54 0 8 1503 510 184 55 0 chr11 120448809 120448918 -1394938 - PB1D9 SINE Alu 0 120 6 8 1503 231 243 67 13 chr11 120448997 120449072 -1394784 - MER57F LTR ERV1 -351 85 7 8 1503 390 241 233 0 chr11 120449338 120449471 -1394385 - ID_B1 SINE B4 -20 204 41 8 1503 188 79 0 50 chr11 120449513 120449553 -1394303 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 8 1503 1167 48 0 20 chr11 120449554 120449702 -1394154 - B1_Mus2 SINE Alu -2 145 1 8 1503 601 180 133 0 chr11 120449705 120449833 -1394023 - B1F2 SINE Alu -2 147 3 8 1503 642 282 162 29 chr11 120449841 120450389 -1393467 + L1MC4a LINE L1 6305 6925 -957 8 1503 347 40 0 0 chr11 120450397 120450447 -1393409 + B1_Mus2 SINE Alu 98 147 0 8 1503 484 277 36 14 chr11 120451054 120451193 -1392663 + RSINE1 SINE B4 20 161 -4 8 1503 1190 62 0 0 chr11 120451226 120451372 -1392484 - B1_Mm SINE Alu 0 147 2 8 1503 395 281 105 28 chr11 120451401 120451544 -1392312 + ID_B1 SINE B4 2 155 -69 8 1503 311 203 81 0 chr11 120451631 120451705 -1392151 + ID_B1 SINE B4 145 224 0 8 1503 300 197 26 66 chr11 120451733 120451809 -1392047 + B4A SINE B4 6 78 -214 8 1503 526 248 128 29 chr11 120452043 120452228 -1391628 + B3 SINE B2 1 198 0 8 1503 423 218 37 0 chr11 120452261 120452387 -1391469 - B1F2 SINE Alu 0 149 19 8 1503 290 265 11 70 chr11 120452652 120452760 -1391096 + B1F SINE Alu 16 115 -2 8 1503 648 144 14 50 chr11 120453173 120453312 -1390544 - B1_Mur3 SINE Alu -8 141 8 8 1503 427 286 0 70 chr11 120453481 120453609 -1390247 - PB1 SINE Alu -7 120 2 8 1503 314 184 12 84 chr11 120453680 120453763 -1390093 + B1_Mur1 SINE Alu 66 142 -7 8 1503 333 281 37 0 chr11 120453814 120453896 -1389960 + B1F SINE Alu 1 85 -64 8 1503 458 221 261 12 chr11 120454085 120454250 -1389606 + B3 SINE B2 1 206 -10 8 1504 327 322 17 42 chr11 120455945 120456065 -1387791 + L1MCa LINE L1 1354 1470 -5038 8 1504 1261 101 10 21 chr11 120457996 120458189 -1385667 + B2_Mm2 SINE B2 3 193 -2 8 1504 26 101 0 0 chr11 120459313 120459402 -1384454 + GC_rich Low_complexity Low_complexity 1 89 0 8 1504 31 68 0 0 chr11 120459530 120459589 -1384267 + GC_rich Low_complexity Low_complexity 1 59 0 8 1504 201 94 0 0 chr11 120460220 120460252 -1383604 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 8 1504 358 211 19 151 chr11 120460747 120460840 -1383016 + B1_Mus1 SINE Alu 29 111 -9 8 1504 1096 96 0 20 chr11 120460840 120460989 -1382867 + B1_Mus1 SINE Alu 3 148 0 8 1504 279 211 19 151 chr11 120460989 120461001 -1382855 + PB1D7 SINE Alu 112 120 0 8 1504 284 196 0 0 chr11 120461018 120461074 -1382782 + B1_Mus2 SINE Alu 87 142 -5 8 1504 286 318 59 52 chr11 120461152 120461288 -1382568 + ID_B1 SINE B4 40 176 -48 8 1504 488 213 18 53 chr11 120461192 120461306 -1382550 + PB1D9 SINE Alu 7 116 -4 8 1504 305 228 75 11 chr11 120461318 120461411 -1382445 + B1F1 SINE Alu 5 103 -46 8 1504 793 103 135 0 chr11 120461887 120462013 -1381843 + B1_Mus1 SINE Alu 6 148 0 8 1504 578 232 16 16 chr11 120462047 120462174 -1381682 - B1_Mur1 SINE Alu -8 141 15 9 1504 497 171 90 0 chr11 120462174 120462285 -1381571 + RMER4B LTR ERVK 1 121 -464 9 1504 568 188 64 21 chr11 120462339 120462580 -1381276 + RMER4B LTR ERVK 287 527 -58 9 1504 1034 87 7 0 chr11 120462699 120462848 -1381008 - B1_Mur4 SINE Alu 0 150 1 9 1504 1677 26 0 15 chr11 120462872 120463068 -1380788 - B2_Mm1t SINE B2 0 193 1 9 1504 955 105 27 40 chr11 120463197 120463346 -1380510 - B1_Mur3 SINE Alu 0 149 3 9 1504 259 242 0 46 chr11 120463348 120463413 -1380443 + B1F1 SINE Alu 88 149 0 8 1504 2379 78 3 56 chr11 120463431 120463772 -1380084 + ORR1A2 LTR MaLR 5 327 0 9 1504 748 131 16 24 chr11 120464829 120464954 -1378902 + B1_Mus2 SINE Alu 23 146 -1 9 1504 204 125 0 0 chr11 120464984 120465016 -1378840 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 9 1504 456 226 0 80 chr11 120465136 120465261 -1378595 - ID_B1 SINE B4 -1 223 109 9 1504 577 234 81 20 chr11 120465401 120465549 -1378307 - B3 SINE B2 -3 213 57 9 1504 530 107 0 0 chr11 120465698 120465782 -1378074 - B1_Mur4 SINE Alu 0 150 67 9 1504 261 219 0 0 chr11 120465782 120465855 -1378001 + (TG)n Simple_repeat Simple_repeat 1 73 0 9 1504 557 111 0 0 chr11 120466018 120466099 -1377757 - B2_Mm2 SINE B2 -88 107 27 9 1504 230 198 0 0 chr11 120468827 120468873 -1374983 + PB1D7 SINE Alu 60 105 -15 9 1504 1930 164 52 78 chr11 120468912 120469051 -1374805 + MTC LTR MaLR 1 120 -301 9 1504 1068 193 9 72 chr11 120469051 120469274 -1374582 - B3 SINE B2 -4 212 4 9 1504 1930 164 52 78 chr11 120469274 120469558 -1374298 + MTC LTR MaLR 121 413 -8 9 1504 22 0 0 0 chr11 120470940 120470962 -1372894 + GC_rich Low_complexity Low_complexity 1 22 0 9 1504 491 270 17 0 chr11 120473424 120473539 -1370317 + PB1D10 SINE Alu 1 117 0 9 1504 241 275 14 0 chr11 120473541 120473610 -1370246 + ID SINE ID 6 75 -149 9 1504 316 244 0 184 chr11 120475754 120475814 -1368042 - PB1D10 SINE Alu -2 115 66 9 1504 924 168 0 27 chr11 120475814 120475961 -1367895 - B1_Mus1 SINE Alu -5 143 1 9 1504 316 244 0 184 chr11 120475961 120476041 -1367815 - PB1D10 SINE Alu -52 65 1 9 1504 1014 60 90 0 chr11 120476087 120476221 -1367635 - B1_Mus2 SINE Alu 0 147 2 9 1504 1358 84 5 35 chr11 120476224 120476422 -1367434 - B2_Mm2 SINE B2 0 195 4 9 1504 228 137 58 19 chr11 120477594 120477646 -1366210 - FAM SINE Alu 0 315 262 9 1504 501 188 0 30 chr11 120477602 120477701 -1366155 - ID_B1 SINE B4 0 224 129 9 1504 747 113 0 0 chr11 120477700 120477806 -1366050 - B1_Mm SINE Alu -40 107 2 9 1504 300 314 128 28 chr11 120477806 120477947 -1365909 - ID_B1 SINE B4 -68 156 2 9 1504 336 278 0 0 chr11 120477958 120478030 -1365826 - tRNA-Pro-CCY tRNA tRNA -3 72 1 9 1504 275 229 25 125 chr11 120478550 120478630 -1365226 + ID2 SINE ID 1 72 -11 9 1504 735 111 17 8 chr11 120479461 120479579 -1364277 + PB1D9 SINE Alu 1 119 -1 9 1504 194 62 0 30 chr11 120480914 120480947 -1362909 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1504 1218 54 0 0 chr11 120482826 120482973 -1360883 - B1_Mus2 SINE Alu 0 147 1 9 1504 888 152 14 7 chr11 120483141 120483287 -1360569 - B1_Mus2 SINE Alu 0 147 1 9 1504 238 304 13 0 chr11 120484478 120484557 -1359299 + (TG)n Simple_repeat Simple_repeat 1 80 0 9 1504 501 312 34 14 chr11 120484617 120484763 -1359093 - RSINE1 SINE B4 -15 150 2 9 1504 771 294 16 21 chr11 120484763 120484992 -1358864 - B4A SINE B4 -63 229 2 9 1504 275 240 113 92 chr11 120485147 120485289 -1358567 - ID_B1 SINE B4 0 224 80 9 1504 544 177 48 89 chr11 120485503 120485627 -1358229 - B1_Mur1 SINE Alu -22 127 9 9 1504 207 0 0 0 chr11 120489830 120489853 -1354003 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1504 234 157 57 38 chr11 120490474 120490527 -1353329 + polypurine Low_complexity Low_complexity 5 58 0 9 1504 684 0 0 0 chr11 120492770 120492846 -1351010 + (GA)n Simple_repeat Simple_repeat 1 76 0 9 1504 21 0 0 0 chr11 120494224 120494245 -1349611 + GC_rich Low_complexity Low_complexity 1 21 0 9 1504 21 36 0 0 chr11 120494368 120494396 -1349460 + GC_rich Low_complexity Low_complexity 1 28 0 9 1504 21 36 0 0 chr11 120494641 120494669 -1349187 + GC_rich Low_complexity Low_complexity 1 28 0 9 1504 294 256 30 30 chr11 120494682 120494847 -1349009 + (CCGGG)n Simple_repeat Simple_repeat 2 166 0 9 1504 301 324 0 51 chr11 120495187 120495304 -1348552 - PB1D10 SINE Alu 0 117 7 9 1504 666 154 73 0 chr11 120495849 120495959 -1347897 - PB1D9 SINE Alu -1 119 2 9 1504 1667 190 98 30 chr11 120496073 120496442 -1347414 + ORR1B1 LTR MaLR 1 394 0 9 1504 392 257 71 35 chr11 120496488 120496601 -1347255 - PB1D7 SINE Alu 0 120 4 9 1504 474 65 0 0 chr11 120496606 120496668 -1347188 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 9 1504 367 304 0 88 chr11 120496690 120496720 -1347136 + MT2B LTR ERVL 139 224 -377 9 1504 529 226 0 10 chr11 120496720 120496823 -1347033 + B1_Mm SINE Alu 2 103 -44 9 1504 367 304 0 88 chr11 120496823 120496838 -1347018 + MT2B LTR ERVL 225 273 -328 9 1504 1207 69 46 0 chr11 120496826 120497000 -1346856 + B2_Mm2 SINE B2 14 195 0 9 1504 859 81 187 0 chr11 120497014 120497137 -1346719 + B1_Mus1 SINE Alu 1 146 -2 9 1504 335 87 0 0 chr11 120497149 120497209 -1346647 + B1_Mur4 SINE Alu 87 149 -1 9 1504 2776 118 213 4 chr11 120497680 120497915 -1345941 + RMER4B LTR ERVK 1 258 -327 9 1504 295 23 45 0 chr11 120497915 120497959 -1345897 + (TTGG)n Simple_repeat Simple_repeat 3 48 0 9 1504 2776 118 213 4 chr11 120497959 120498207 -1345649 + RMER4B LTR ERVK 259 585 0 9 1504 1188 168 47 0 chr11 120498980 120499194 -1344662 + MTC LTR MaLR 143 366 -55 9 1504 24 0 0 0 chr11 120499217 120499241 -1344615 + AT_rich Low_complexity Low_complexity 1 24 0 9 1504 944 160 0 7 chr11 120499241 120499392 -1344464 - B1_Mur4 SINE Alu 0 150 1 9 1504 504 0 0 0 chr11 120499415 120499471 -1344385 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1504 1633 48 0 0 chr11 120499472 120499660 -1344196 + B2_Mm1a SINE B2 1 188 -5 9 1504 1246 105 72 0 chr11 120499663 120499844 -1344012 + B2_Mm2 SINE B2 1 194 -1 9 1504 1249 48 0 0 chr11 120499851 120499998 -1343858 + B1_Mm SINE Alu 1 147 0 9 1504 207 0 0 0 chr11 120500000 120500023 -1343833 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1504 705 147 76 62 chr11 120500033 120500178 -1343678 + B1_Mur3 SINE Alu 3 149 0 2 1504 663 117 0 0 chr11 120500219 120500322 -1343534 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 3 1504 213 349 36 0 chr11 120501220 120501303 -1342553 + PB1 SINE Alu 40 125 -2 4 1504 303 347 10 0 chr11 120501316 120501414 -1342442 + PB1D10 SINE Alu 3 101 -16 5 1504 450 101 0 0 chr11 120501416 120501485 -1342371 + (GGAGA)n Simple_repeat Simple_repeat 1 69 0 6 1504 198 0 0 0 chr11 120503785 120503807 -1340049 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 7 1504 675 274 61 0 chr11 120505895 120506092 -1337764 + B3 SINE B2 2 210 -6 8 1504 306 265 24 73 chr11 120506381 120506506 -1337350 + PB1D7 SINE Alu 1 120 0 9 1504 252 0 0 0 chr11 120510002 120510030 -1333826 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1 1504 198 71 0 0 chr11 120510075 120510103 -1333753 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1504 1196 68 0 7 chr11 120510104 120510253 -1333603 + B1_Mus1 SINE Alu 1 148 0 1 1504 25 31 0 0 chr11 120510256 120510288 -1333568 + AT_rich Low_complexity Low_complexity 1 32 0 1 1504 464 205 430 0 chr11 120510294 120510445 -1333411 - B3 SINE B2 0 216 1 1 1504 518 285 28 55 chr11 120510469 120510651 -1333205 - B3A SINE B2 -12 186 10 1 1504 1058 123 6 0 chr11 120510671 120510842 -1333014 + (TTC)n Simple_repeat Simple_repeat 1 172 0 1 1504 658 203 83 0 chr11 120510843 120510976 -1332880 - B1_Mur2 SINE Alu -5 144 1 1 1504 617 149 450 0 chr11 120510984 120511133 -1332723 - B3 SINE B2 0 216 1 1 1504 957 220 55 5 chr11 120511519 120511720 -1332136 + B3 SINE B2 2 212 -4 1 1504 2517 125 41 0 chr11 120511897 120512264 -1331592 - RLTR14 LTR ERV1 0 382 1 2 1504 643 232 296 90 chr11 120512655 120512872 -1330984 - MT2A LTR ERVL -69 464 145 2 1504 1199 75 0 0 chr11 120512872 120513019 -1330837 + B1_Mus2 SINE Alu 1 147 0 2 1504 643 232 296 90 chr11 120513019 120513120 -1330736 - MT2A LTR ERVL -389 144 63 2 1504 511 248 63 8 chr11 120513120 120513246 -1330610 + B1_Mus1 SINE Alu 4 136 -12 2 1504 243 0 0 0 chr11 120513246 120513273 -1330583 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2 1504 643 232 296 90 chr11 120513273 120513331 -1330525 - MT2A LTR ERVL -471 62 9 2 1504 656 241 49 6 chr11 120513342 120513505 -1330351 - B3 SINE B2 -46 170 1 2 1504 405 0 0 0 chr11 120513535 120513580 -1330276 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1504 773 137 0 16 chr11 120513585 120513711 -1330145 - B1_Mur4 SINE Alu -15 135 12 2 1504 543 259 26 98 chr11 120513724 120513917 -1329939 - B4A SINE B4 -72 220 42 2 1504 242 154 0 19 chr11 120513920 120513973 -1329883 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2 1504 1244 35 7 0 chr11 120513974 120514118 -1329738 - B1_Mus2 SINE Alu -2 145 1 3 1504 498 188 254 8 chr11 120514124 120514242 -1329614 - B1_Mus2 SINE Alu 0 147 1 3 1504 258 235 0 0 chr11 120514242 120514293 -1329563 - B4 SINE B4 -237 55 5 2 1504 576 223 0 0 chr11 120514299 120514411 -1329445 + B3 SINE B2 105 216 0 3 1504 1372 94 15 40 chr11 120514422 120514622 -1329234 + B2_Mm2 SINE B2 1 195 0 3 1504 1320 96 10 26 chr11 120514628 120514820 -1329036 + B2_Mm1t SINE B2 1 189 -4 3 1504 306 0 0 0 chr11 120514887 120514921 -1328935 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 3 1504 465 19 0 0 chr11 120516384 120516438 -1327418 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 3 1504 530 297 15 93 chr11 120516438 120516508 -1327348 - ID_B1 SINE B4 -12 212 152 3 1504 212 0 36 0 chr11 120516517 120516545 -1327311 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1504 1114 76 0 14 chr11 120516545 120516682 -1327174 - B1_Mus1 SINE Alu -8 140 4 3 1504 530 297 15 93 chr11 120516682 120516809 -1327047 - ID_B1 SINE B4 -73 151 31 3 1504 234 319 66 46 chr11 120516775 120516847 -1327009 - RLTR25B LTR ERVK -431 597 476 4 1504 395 167 12 37 chr11 120516847 120516928 -1326928 - PB1D9 SINE Alu 0 120 42 4 1504 234 319 66 46 chr11 120516928 120516972 -1326884 - RLTR25B LTR ERVK -431 475 397 4 1504 207 196 0 19 chr11 120521519 120521571 -1322285 + (CGG)n Simple_repeat Simple_repeat 3 53 0 4 1504 21 36 0 0 chr11 120521712 120521740 -1322116 + GC_rich Low_complexity Low_complexity 1 28 0 4 1504 22 0 0 0 chr11 120521990 120522012 -1321844 + GC_rich Low_complexity Low_complexity 1 22 0 4 1504 214 315 0 0 chr11 120523043 120523097 -1320759 + B1F SINE Alu 49 102 -47 4 1504 24 32 0 0 chr11 120523102 120523133 -1320723 + AT_rich Low_complexity Low_complexity 1 31 0 4 1504 261 0 0 0 chr11 120523453 120523482 -1320374 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1504 1131 178 14 14 chr11 120523703 120523914 -1319942 + B3 SINE B2 2 212 -4 4 1504 401 291 61 28 chr11 120524181 120524361 -1319495 + MIR SINE MIR 36 221 -41 4 1504 1105 314 149 14 chr11 120524818 120525403 -1318453 + L1MB5 LINE L1 5440 6103 -71 5 1504 252 299 51 10 chr11 120525437 120525535 -1318321 + L1MB5 LINE L1 6073 6174 0 5 1504 1183 109 16 32 chr11 120525544 120525710 -1318146 + B2_Mm2 SINE B2 1 164 -31 5 1504 270 0 0 0 chr11 120525710 120525740 -1318116 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5 1504 1183 109 16 32 chr11 120525740 120525762 -1318094 + B2_Mm2 SINE B2 165 186 -9 5 1504 220 275 35 70 chr11 120525778 120525864 -1317992 + PB1D10 SINE Alu 35 117 0 5 1504 1223 54 0 0 chr11 120527356 120527503 -1316353 - B1_Mus2 SINE Alu 0 147 1 5 1504 1210 48 0 7 chr11 120528495 120528642 -1315214 + B1_Mm SINE Alu 1 146 -1 5 1504 269 355 0 43 chr11 120528660 120528822 -1315034 + RMER12 LTR ERVK 701 855 -467 5 1504 960 131 15 0 chr11 120528847 120528984 -1314872 - B1_Mus1 SINE Alu -8 140 2 5 1504 410 335 27 55 chr11 120529067 120529250 -1314606 + MLT2B2 LTR ERVL 220 397 -118 5 1504 326 354 8 66 chr11 120529505 120529626 -1314230 - PB1 SINE Alu -2 125 12 5 1504 807 283 78 0 chr11 120529728 120529933 -1313923 - ID_B1 SINE B4 -1 223 3 6 1504 231 83 26 65 chr11 120529958 120530007 -1313849 + T-rich Low_complexity Low_complexity 26 74 0 6 1504 1182 95 0 0 chr11 120530007 120530155 -1313701 - B1_Mus1 SINE Alu 0 148 1 6 1504 231 83 26 65 chr11 120530155 120530182 -1313674 + T-rich Low_complexity Low_complexity 1 25 0 6 1504 419 289 23 81 chr11 120530201 120530334 -1313522 - ID_B1 SINE B4 -2 222 93 6 1504 449 252 120 15 chr11 120530334 120530467 -1313389 - B1F2 SINE Alu 0 149 3 6 1504 419 289 23 81 chr11 120530467 120530506 -1313350 - ID_B1 SINE B4 -132 92 60 6 1504 482 303 42 0 chr11 120530598 120530740 -1313116 - B1F SINE Alu -1 148 1 6 1504 28 0 0 0 chr11 120530790 120530818 -1313038 + AT_rich Low_complexity Low_complexity 1 28 0 6 1504 476 209 34 76 chr11 120530982 120531101 -1312755 - B1_Mus1 SINE Alu 0 148 35 6 1504 294 253 0 57 chr11 120531130 120531218 -1312638 + L1MC4 LINE L1 7799 7881 -161 6 1504 390 242 0 0 chr11 120531237 120531361 -1312495 + (TG)n Simple_repeat Simple_repeat 1 124 0 7 1504 657 241 17 22 chr11 120531361 120531539 -1312317 - B3 SINE B2 -13 203 27 7 1504 183 42 0 0 chr11 120531540 120531564 -1312292 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1504 327 215 45 0 chr11 120531644 120531732 -1312124 + ID_B1 SINE B4 82 169 -55 7 1504 307 222 70 10 chr11 120531657 120531757 -1312099 + PB1D10 SINE Alu 10 115 -2 7 1504 253 247 13 13 chr11 120531790 120531868 -1311988 + L1MC4 LINE L1 6933 7010 -1032 7 1504 1155 213 0 10 chr11 120531909 120532113 -1311743 + B3 SINE B2 1 202 -14 7 1504 351 0 0 0 chr11 120532116 120532155 -1311701 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1504 180 0 0 0 chr11 120532155 120532174 -1311682 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1504 746 93 246 0 chr11 120532184 120532302 -1311554 - B1_Mus1 SINE Alu 0 148 2 7 1504 1520 57 0 30 chr11 120532348 120532546 -1311310 + B2_Mm1t SINE B2 2 193 0 8 1504 24 32 0 0 chr11 120532568 120532599 -1311257 + AT_rich Low_complexity Low_complexity 1 31 0 8 1504 727 232 86 31 chr11 120532599 120532648 -1311208 - MTC LTR MaLR -166 234 179 8 1504 1107 76 7 0 chr11 120532648 120532793 -1311063 - B1_Mus1 SINE Alu 0 148 3 8 1504 1011 107 76 6 chr11 120532793 120532965 -1310891 - MTC LTR MaLR -238 183 1 8 1504 415 271 81 56 chr11 120533568 120533728 -1310128 + RSINE1 SINE B4 2 165 0 8 1504 711 173 29 29 chr11 120533774 120533911 -1309945 - B1_Mus1 SINE Alu -2 146 10 8 1504 25 0 0 0 chr11 120534384 120534409 -1309447 + GC_rich Low_complexity Low_complexity 1 25 0 8 1504 252 226 147 21 chr11 120535477 120535572 -1308284 - MLT1C LTR MaLR -18 449 343 8 1504 687 142 33 0 chr11 120535603 120535723 -1308133 - B1_Mur4 SINE Alu -22 128 5 8 1504 300 299 50 43 chr11 120535615 120535776 -1308080 - B4 SINE B4 -88 204 43 8 1504 276 303 241 48 chr11 120535763 120536017 -1307839 - MLT1C LTR MaLR -162 305 3 8 1504 626 204 87 7 chr11 120536863 120537001 -1306855 - B1F2 SINE Alu 0 149 1 9 1504 1323 20 0 0 chr11 120537152 120537300 -1306556 + B1_Mus1 SINE Alu 1 148 0 9 1504 744 261 42 49 chr11 120538272 120538572 -1305284 - ID_B1 SINE B4 0 292 12 9 1504 682 190 44 0 chr11 120539441 120539578 -1304278 + URR1A DNA MER1_type 82 224 -2 9 1504 921 127 7 0 chr11 120540345 120540487 -1303369 - B1_Mus1 SINE Alu 0 148 6 9 1504 900 159 176 0 chr11 120540560 120540742 -1303114 + B3 SINE B2 3 216 0 9 1504 417 70 0 0 chr11 120540933 120540990 -1302866 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1504 387 223 138 9 chr11 120541000 120541122 -1302734 + B1_Mur1 SINE Alu 10 147 -2 9 1504 258 270 74 57 chr11 120543032 120543154 -1300702 - MER33 DNA MER1_type -24 300 177 9 1504 216 0 0 0 chr11 120543185 120543209 -1300647 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1504 225 0 0 0 chr11 120543249 120543274 -1300582 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 9 1504 1179 30 0 0 chr11 120543274 120543408 -1300448 - B1_Mus2 SINE Alu -13 134 1 1 1504 780 179 7 65 chr11 120543458 120543613 -1300243 - B1_Mus2 SINE Alu -1 146 1 1 1504 697 239 104 5 chr11 120543623 120543816 -1300040 - B3 SINE B2 0 216 5 1 1504 274 278 155 0 chr11 120544181 120544278 -1299578 - MER54A LTR ERVL -642 259 148 1 1504 192 152 0 0 chr11 120544392 120544425 -1299431 + T-rich Low_complexity Low_complexity 1 33 0 1 1504 1554 58 11 0 chr11 120547013 120547203 -1296653 + B2_Mm1a SINE B2 2 193 0 1 1504 240 35 0 0 chr11 120548855 120548884 -1294972 + (CAGGA)n Simple_repeat Simple_repeat 5 33 0 1 1504 226 270 48 0 chr11 120549967 120550030 -1293826 + B1F1 SINE Alu 13 78 -71 1 1504 1643 26 11 0 chr11 120551216 120551407 -1292449 - B2_Mm1a SINE B2 0 193 1 1 1504 180 0 0 0 chr11 120551521 120551541 -1292315 + (TTG)n Simple_repeat Simple_repeat 3 22 0 1 1504 195 42 0 0 chr11 120551546 120551570 -1292286 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1504 538 209 34 60 chr11 120551570 120551672 -1292184 - PB1D9 SINE Alu -13 107 2 1 1504 1215 62 0 0 chr11 120552364 120552510 -1291346 + B1_Mm SINE Alu 2 147 0 1 1504 485 243 33 59 chr11 120552544 120552697 -1291159 - B1_Mur1 SINE Alu 0 149 1 1 1504 295 381 57 6 chr11 120552804 120552981 -1290875 - B4 SINE B4 -15 277 92 1 1504 894 110 79 0 chr11 120553007 120553134 -1290722 - B1_Mur4 SINE Alu -13 137 1 1 1504 307 305 76 99 chr11 120553567 120553590 -1290266 - B2_Mm2 SINE B2 -12 183 162 1 1504 183 80 0 0 chr11 120553590 120553615 -1290241 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1504 575 305 76 99 chr11 120553615 120553762 -1290094 - B3A SINE B2 -34 161 17 1 1504 180 77 0 0 chr11 120554948 120554974 -1288882 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 1 1504 347 169 69 46 chr11 120555031 120555118 -1288738 - B1_Mus2 SINE Alu -13 134 46 1 1504 499 161 0 0 chr11 120555549 120555636 -1288220 - PB1D9 SINE Alu 0 120 34 1 1504 763 199 0 21 chr11 120557790 120557801 -1286055 - B1_Mur1 SINE Alu -1 148 139 1 1504 294 95 0 0 chr11 120557801 120557843 -1286013 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 1 1504 763 199 0 21 chr11 120557843 120557975 -1285881 - B1_Mur1 SINE Alu -11 138 8 1 1504 442 262 129 35 chr11 120557975 120558145 -1285711 - B3 SINE B2 -1 215 30 1 1504 478 167 86 26 chr11 120558340 120558457 -1285399 - B1F2 SINE Alu -1 148 25 1 1504 828 35 17 17 chr11 120558684 120558793 -1285063 - B1_Mus2 SINE Alu 0 147 38 1 1504 750 165 42 28 chr11 120558793 120558936 -1284920 - B1_Mus2 SINE Alu -2 145 1 1 1504 335 305 0 0 chr11 120563274 120563356 -1280500 - ID_B1 SINE B4 -2 222 141 1 1504 1342 99 21 5 chr11 120563451 120563643 -1280213 - B2_Mm2 SINE B2 0 195 1 1 1504 252 100 0 0 chr11 120564183 120564223 -1279633 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1504 1087 64 14 0 chr11 120564223 120564364 -1279492 - B1_Mus2 SINE Alu 0 147 5 1 1504 1313 46 97 6 chr11 120564385 120564561 -1279295 - B2_Mm2 SINE B2 -3 192 1 1 1504 573 15 0 0 chr11 120568924 120568990 -1274866 + (CCCCAG)n Simple_repeat Simple_repeat 5 70 0 1 1504 201 74 0 0 chr11 120569598 120569625 -1274231 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 1504 180 0 0 0 chr11 120570561 120570581 -1273275 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 1 1504 965 122 7 39 chr11 120571602 120571756 -1272100 - B1_Mur4 SINE Alu 0 150 2 1 1504 297 0 0 0 chr11 120577567 120577600 -1266256 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1504 363 230 46 17 chr11 120577928 120578030 -1265826 - PB1D10 SINE Alu -2 125 14 1 1504 180 306 48 0 chr11 120578612 120578674 -1265182 - MIR3 SINE MIR -138 70 6 1 1504 396 0 0 0 chr11 120580691 120580735 -1263121 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1504 871 115 28 28 chr11 120581735 120581878 -1261978 - B1_Mur4 SINE Alu -7 143 1 1 1504 35 0 0 0 chr11 120582885 120582920 -1260936 + GC_rich Low_complexity Low_complexity 1 35 0 1 1504 673 333 174 52 chr11 120585751 120585792 -1258064 + MER63C DNA AcHobo 19 56 -874 1 1504 213 65 0 0 chr11 120585792 120585823 -1258033 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1504 673 333 174 52 chr11 120585823 120586063 -1257793 + MER63C DNA AcHobo 57 326 -604 1 1504 1149 52 0 0 chr11 120586063 120586198 -1257658 + B1_Mus2 SINE Alu 2 136 -11 1 1504 207 0 0 0 chr11 120586198 120586221 -1257635 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 23 673 333 174 52 chr11 120586221 120586460 -1257396 + MER63C DNA AcHobo 327 604 -326 1 1505 416 229 13 97 chr11 120588986 120589141 -1254715 + MT2B LTR ERVL 138 279 -322 1 1505 798 122 21 28 chr11 120589026 120589169 -1254687 + B1_Mur3 SINE Alu 8 149 0 1 1505 866 182 105 0 chr11 120589599 120589780 -1254076 + B3 SINE B2 16 215 -1 1 1505 206 144 10 104 chr11 120592792 120592985 -1250871 + (CACCT)n Simple_repeat Simple_repeat 4 178 0 1 1505 251 272 40 40 chr11 120592996 120593172 -1250684 + (CTCA)n Simple_repeat Simple_repeat 3 178 0 1 1505 235 204 0 0 chr11 120594691 120594724 -1249132 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1505 441 0 0 0 chr11 120594724 120594773 -1249083 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1505 235 204 0 0 chr11 120594773 120594788 -1249068 + (CA)n Simple_repeat Simple_repeat 1 15 0 1 1505 279 215 96 70 chr11 120594961 120595076 -1248780 + RMER20B LTR ERVK 472 589 -38 1 1505 229 269 19 0 chr11 120595087 120595139 -1248717 - B4 SINE B4 -238 54 2 1 1505 1056 82 22 0 chr11 120595232 120595367 -1248489 - B1_Mus1 SINE Alu -10 138 1 1 1505 614 290 16 43 chr11 120595651 120595835 -1248021 + MER58A DNA MER1_type 46 224 0 1 1505 2645 57 0 100 chr11 120596573 120596815 -1247041 - MTB LTR MaLR 0 400 196 1 1505 1242 41 7 0 chr11 120596815 120596960 -1246896 - B1_Mm SINE Alu 0 147 2 1 1505 2645 57 0 100 chr11 120596960 120597147 -1246709 - MTB LTR MaLR -205 195 14 1 1505 1524 123 83 129 chr11 120597128 120597275 -1246581 - MTB-int LTR MaLR -10 1088 955 1 1505 1532 26 15 60 chr11 120597275 120597476 -1246380 + B2_Mm1a SINE B2 1 192 -1 1 1505 1524 123 83 129 chr11 120597476 120597504 -1246352 - MTB-int LTR MaLR -144 954 946 1 1505 1145 75 0 27 chr11 120597504 120597654 -1246202 + B1_Mus2 SINE Alu 2 147 0 1 1505 1524 123 83 129 chr11 120597654 120597886 -1245970 - MTB-int LTR MaLR -153 945 699 1 1505 2967 171 52 40 chr11 120597886 120598514 -1245342 - RLTR26 LTR ERVK 0 642 7 1 1505 3512 120 283 69 chr11 120598499 120598751 -1245105 - MTB-int LTR MaLR -458 800 517 1 1505 1255 34 0 13 chr11 120598751 120598900 -1244956 - B1_Mus2 SINE Alu 0 147 1 1 1505 207 0 0 0 chr11 120598901 120598924 -1244932 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1505 1135 59 0 0 chr11 120598924 120599060 -1244796 - B1_Mm SINE Alu -10 137 2 1 1505 3512 125 44 83 chr11 120599060 120599569 -1244287 - MTB-int LTR MaLR -742 516 3 1 1505 1404 95 4 35 chr11 120599607 120599632 -1244224 - MTB_Mm LTR MaLR -185 222 198 1 1505 1242 54 0 0 chr11 120599632 120599779 -1244077 - B1_Mus1 SINE Alu 0 148 2 1 1505 1404 95 4 35 chr11 120599779 120599982 -1243874 - MTB_Mm LTR MaLR -210 197 2 1 1505 757 182 139 0 chr11 120599982 120600141 -1243715 - MTD LTR MaLR -38 381 200 1 1505 232 211 0 38 chr11 120600143 120600222 -1243634 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 1 1505 298 318 56 70 chr11 120600228 120600370 -1243486 - MT2B LTR ERVL -287 314 175 1 1505 557 250 0 0 chr11 120600262 120600378 -1243478 - B1_Mus1 SINE Alu -29 119 4 1 1505 711 242 0 75 chr11 120600378 120600545 -1243311 - MTD LTR MaLR -217 202 49 1 1505 410 243 256 0 chr11 120600531 120600690 -1243166 + B3A SINE B2 13 212 -4 1 1505 231 257 40 13 chr11 120600692 120600767 -1243089 - MTD LTR MaLR -342 77 1 1 1505 1221 62 0 0 chr11 120601523 120601669 -1242187 + B1_Mus2 SINE Alu 2 147 0 1 1505 288 164 48 131 chr11 120601937 120602021 -1241835 - B4A SINE B4 0 292 216 1 1505 442 281 0 17 chr11 120602091 120602207 -1241649 - RSINE1 SINE B4 -40 125 12 1 1505 825 101 147 0 chr11 120602225 120602354 -1241502 + B1_Mur4 SINE Alu 1 148 -2 1 1505 231 244 0 0 chr11 120603606 120603651 -1240205 - B1F1 SINE Alu -10 139 95 1 1505 573 15 0 0 chr11 120603784 120603850 -1240006 + (TCC)n Simple_repeat Simple_repeat 2 67 0 1 1505 595 233 17 0 chr11 120606192 120606312 -1237544 + B1_Mur2 SINE Alu 26 147 -2 1 1505 1466 73 16 5 chr11 120606328 120606520 -1237336 - B2_Mm2 SINE B2 -1 194 1 1 1505 924 108 7 0 chr11 120606566 120606705 -1237151 + B2_Mm1t SINE B2 40 179 -14 1 1505 364 142 316 9 chr11 120606773 120606887 -1236969 + B2_Mm2 SINE B2 47 195 0 1 1505 180 111 0 0 chr11 120607449 120607476 -1236380 + (GAA)n Simple_repeat Simple_repeat 2 28 0 1 1505 1335 77 50 0 chr11 120608266 120608448 -1235408 + B2_Mm2 SINE B2 2 192 -3 1 1505 819 290 92 8 chr11 120608853 120609114 -1234742 + B4 SINE B4 5 287 -5 1 1505 2482 195 78 35 chr11 120609200 120609711 -1234145 - RMER16 LTR ERVK 0 533 1 1 1505 352 317 20 10 chr11 120609803 120609905 -1233951 - RSINE1 SINE B4 -20 145 43 1 1505 22 0 0 0 chr11 120609905 120609927 -1233929 + AT_rich Low_complexity Low_complexity 1 22 0 1 1505 321 26 0 0 chr11 120610457 120610495 -1233361 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1505 909 65 8 0 chr11 120610495 120610619 -1233237 - B1_Mus2 SINE Alu -12 135 11 1 1505 1137 63 0 27 chr11 120610661 120610807 -1233049 + B1_Mus1 SINE Alu 4 145 -3 1 1505 585 191 0 9 chr11 120611929 120612045 -1231811 - B1_Mur3 SINE Alu -32 117 3 1 1505 636 251 96 11 chr11 120613058 120613235 -1230621 + B3A SINE B2 1 192 -6 1 1505 438 91 0 0 chr11 120613262 120613328 -1230528 + RLTR18 LTR ERVK 2 67 -549 1 1505 4428 17 0 0 chr11 120613343 120613825 -1230031 - LTRIS_Mm LTR ERV1 0 482 1 1 1505 34752 37 11 17 chr11 120613825 120618138 -1225718 - MuRRS-int LTR ERV1 0 4690 405 1 1505 2261 15 114 0 chr11 120618138 120618400 -1225456 - RLTR10B LTR ERVK 0 292 1 1 1505 34752 52 3 18 chr11 120618400 120618649 -1225207 - MuRRS-int LTR ERV1 -4286 404 1 1 1505 4334 21 2 0 chr11 120618649 120619130 -1224726 - LTRIS_Mm LTR ERV1 0 482 1 1 1505 1458 151 69 105 chr11 120619130 120619464 -1224392 + RLTR18 LTR ERVK 65 386 -230 1 1505 634 163 36 0 chr11 120619461 120619601 -1224255 + B3 SINE B2 20 173 -20 1 1505 456 261 0 35 chr11 120620041 120620156 -1223700 - PB1D9 SINE Alu 0 120 10 1 1505 1162 194 24 0 chr11 120620156 120620367 -1223489 - B3 SINE B2 0 216 1 2 1505 243 0 0 0 chr11 120620405 120620432 -1223424 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1505 260 211 64 26 chr11 120620445 120620523 -1223333 + ERVL-B4-int LTR ERVL 2987 3067 -2600 2 1505 2144 169 45 3 chr11 120620614 120620971 -1222885 - ORR1D1 LTR MaLR 0 374 3 2 1505 563 259 53 0 chr11 120620980 120621111 -1222745 - B1F1 SINE Alu -10 139 2 2 1505 1430 84 11 0 chr11 120621137 120621328 -1222528 - B2_Mm1t SINE B2 0 193 1 2 1505 1395 194 91 7 chr11 120621486 120621793 -1222063 - RMER15 LTR ERVL 0 575 243 2 1505 2244 117 24 163 chr11 120621796 120621959 -1221897 + RLTR44D LTR ERVK 1 163 -323 2 1505 423 0 0 0 chr11 120621959 120622006 -1221850 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1505 225 0 0 0 chr11 120622006 120622030 -1221826 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1505 2244 117 24 163 chr11 120622030 120622217 -1221639 + RLTR44D LTR ERVK 164 319 -167 2 1505 3855 19 12 2 chr11 120622217 120622649 -1221207 + RLTR10C LTR ERVK 1 436 0 2 1505 2244 117 24 163 chr11 120622649 120622848 -1221008 + RLTR44D LTR ERVK 320 473 -13 2 1505 1228 178 38 8 chr11 120622868 120623106 -1220750 - RMER15 LTR ERVL -330 245 1 2 1505 403 277 18 0 chr11 120623333 120623445 -1220411 + ERVL-B4-int LTR ERVL 4244 4357 -1357 2 1505 216 0 0 0 chr11 120625709 120625733 -1218123 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1505 1241 41 7 0 chr11 120626308 120626455 -1217401 - B1_Mus1 SINE Alu 0 148 1 2 1505 200 283 74 25 chr11 120626675 120626838 -1217018 + (TGAG)n Simple_repeat Simple_repeat 4 174 0 2 1505 229 168 53 53 chr11 120626781 120626894 -1216962 + (AGGTG)n Simple_repeat Simple_repeat 4 116 0 2 1505 3254 74 0 14 chr11 120628883 120629296 -1214560 - MTB_Mm LTR MaLR 0 407 1 2 1505 1053 172 57 5 chr11 120629725 120629935 -1213921 + MTC LTR MaLR 1 221 -200 2 1505 334 73 71 18 chr11 120629928 120629984 -1213872 + B1_Mus1 SINE Alu 7 65 -83 2 1505 576 156 154 15 chr11 120629984 120630114 -1213742 + B1_Mur2 SINE Alu 2 149 0 2 1505 524 256 51 0 chr11 120630118 120630255 -1213601 - B3 SINE B2 -10 206 63 2 1505 361 120 342 53 chr11 120630279 120630393 -1213463 - B2_Mm2 SINE B2 0 195 49 2 1505 5731 92 51 89 chr11 120630408 120631337 -1212519 + RLTR13B1 LTR ERVK 1 893 0 2 1505 766 128 8 23 chr11 120631337 120631454 -1212402 - B2_Mm1t SINE B2 -28 165 50 2 1505 477 182 224 32 chr11 120631467 120631592 -1212264 - PB1D9 SINE Alu 0 150 2 2 1505 1428 67 22 0 chr11 120631692 120631872 -1211984 - B2_Mm1t SINE B2 -9 184 1 2 1505 1199 43 7 0 chr11 120632079 120632220 -1211636 - B1_Mus2 SINE Alu -5 142 1 2 1505 1368 130 48 20 chr11 120632223 120632474 -1211382 - RMER6A LTR ERVK 0 756 499 2 1505 1691 161 13 7 chr11 120632478 120632779 -1211077 + ORR1A1 LTR MaLR 1 303 -43 2 1505 1232 48 7 0 chr11 120632779 120632925 -1210931 + B1_Mus2 SINE Alu 1 147 0 2 1505 3072 3 0 0 chr11 120632928 120633297 -1210559 + L1Md_T LINE L1 6249 6582 0 2 1505 359 58 58 0 chr11 120633302 120633354 -1210502 + ORR1A1 LTR MaLR 272 326 0 2 1505 844 162 37 6 chr11 120633354 120633515 -1210341 - RMER6A LTR ERVK -191 529 364 2 1505 575 164 8 49 chr11 120633588 120633710 -1210146 - MT2B LTR ERVL -304 297 181 2 1505 303 307 83 35 chr11 120633612 120633781 -1210075 - RLTR25B LTR ERVK -510 518 342 2 1505 1272 134 32 0 chr11 120633824 120634011 -1209845 - B2_Mm1t SINE B2 0 193 1 2 1505 834 221 83 29 chr11 120635233 120635438 -1208418 + B3 SINE B2 1 216 0 2 1505 835 134 0 37 chr11 120635445 120635603 -1208253 + B1_Mur4 SINE Alu 5 148 -2 2 1505 243 0 0 0 chr11 120635866 120635893 -1207963 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1505 382 58 5 0 chr11 120635992 120636050 -1207806 - B1_Mur3 SINE Alu -13 136 77 2 1505 399 188 0 81 chr11 120636214 120636301 -1207555 - B1_Mur4 SINE Alu -69 81 2 2 1505 549 254 8 31 chr11 120636352 120636482 -1207374 - RSINE1 SINE B4 -36 129 3 2 1505 1227 36 0 0 chr11 120636588 120636727 -1207129 + B1_Mus1 SINE Alu 2 140 -8 2 1505 279 0 0 0 chr11 120636727 120636758 -1207098 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1505 288 0 0 0 chr11 120636959 120636991 -1206865 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1505 1145 82 0 0 chr11 120637001 120637148 -1206708 - B1_Mus1 SINE Alu 0 148 2 2 1505 432 200 232 40 chr11 120637971 120638122 -1205734 + RMER1C Other Other 1150 1329 -13 2 1505 274 276 13 13 chr11 120638822 120638899 -1204957 + B4A SINE B4 187 263 -29 2 1505 458 163 10 0 chr11 120638930 120639028 -1204828 + (CA)n Simple_repeat Simple_repeat 1 99 0 2 1505 303 287 45 82 chr11 120639149 120639259 -1204597 - PB1D7 SINE Alu -12 108 3 2 1505 255 31 0 0 chr11 120639263 120639295 -1204561 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1505 391 234 137 51 chr11 120639302 120639419 -1204437 - B1_Mus2 SINE Alu -20 127 1 2 1505 298 103 0 33 chr11 120639960 120639977 -1203879 + (TTCTCC)n Simple_repeat Simple_repeat 3 19 0 2 1505 1280 27 0 0 chr11 120639977 120640125 -1203731 - B1_Mus1 SINE Alu 0 148 1 2 1505 298 103 0 33 chr11 120640125 120640167 -1203689 + (TTCTCC)n Simple_repeat Simple_repeat 5 44 0 2 1505 1180 88 48 21 chr11 120640179 120640366 -1203490 - B2_Mm2 SINE B2 0 195 4 2 1505 263 185 41 110 chr11 120640579 120640652 -1203204 - B1F2 SINE Alu -80 69 2 2 1505 248 167 0 132 chr11 120640725 120640808 -1203048 + MT2B LTR ERVL 193 264 -337 2 1505 662 56 0 0 chr11 120640754 120640843 -1203013 + B1_Mus2 SINE Alu 59 147 0 2 1505 634 234 23 0 chr11 120641002 120641130 -1202726 - B1F1 SINE Alu -18 131 1 2 1505 676 201 26 65 chr11 120641164 120641318 -1202538 - B1_Mur3 SINE Alu 0 149 2 2 1505 785 211 7 13 chr11 120641443 120641592 -1202264 + B1_Mur2 SINE Alu 2 149 0 2 1505 237 232 87 0 chr11 120644920 120644989 -1198867 + MIRc SINE MIR 30 104 -164 2 1505 204 179 0 0 chr11 120645376 120645415 -1198441 + (CAG)n Simple_repeat Simple_repeat 3 41 0 2 1505 26 64 0 0 chr11 120645481 120645528 -1198328 + GC_rich Low_complexity Low_complexity 1 47 0 2 1505 193 53 25 50 chr11 120645712 120645752 -1198104 + (CGGGG)n Simple_repeat Simple_repeat 5 43 0 2 1505 36 40 0 0 chr11 120645790 120645840 -1198016 + GC_rich Low_complexity Low_complexity 1 50 0 2 1505 453 158 196 46 chr11 120651265 120651418 -1192438 - B2_Mm2 SINE B2 -14 181 6 2 1505 382 279 138 8 chr11 120651597 120651727 -1192129 + B1F SINE Alu 3 149 0 2 1505 551 244 79 34 chr11 120657933 120658111 -1185745 - MER54B LTR ERVL -319 474 289 2 1505 1090 75 0 33 chr11 120658112 120658264 -1185592 + B1_Mus1 SINE Alu 2 148 0 2 1505 261 118 137 0 chr11 120658274 120658325 -1185531 + MTE2a LTR MaLR 317 374 -5 2 1505 854 138 27 27 chr11 120658735 120658884 -1184972 + B1_Mur3 SINE Alu 1 149 0 2 1505 805 245 5 83 chr11 120658909 120659127 -1184729 + B3 SINE B2 1 201 -15 2 1505 1017 80 73 0 chr11 120659127 120659264 -1184592 + B1_Mus2 SINE Alu 1 147 0 2 1505 417 70 0 0 chr11 120659291 120659348 -1184508 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1505 761 171 42 28 chr11 120659421 120659565 -1184291 + B1_Mus1 SINE Alu 1 146 -2 2 1505 3055 131 60 8 chr11 120659610 120660080 -1183776 + RLTR19A LTR ERVK 1 494 -2 2 1505 1221 106 0 0 chr11 120660161 120660341 -1183515 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 2 1505 807 142 0 0 chr11 120660341 120660475 -1183381 + (TTC)n Simple_repeat Simple_repeat 1 134 0 2 1505 975 76 6 117 chr11 120660476 120660614 -1183242 - B1_Mus1 SINE Alu -2 146 22 2 1505 1472 38 49 0 chr11 120660614 120660797 -1183059 + B2_Mm1a SINE B2 2 193 0 2 1505 975 76 6 117 chr11 120660797 120660821 -1183035 - B1_Mus1 SINE Alu -127 21 2 2 1505 201 246 43 0 chr11 120660895 120660964 -1182892 + A-rich Low_complexity Low_complexity 5 76 0 2 1505 321 259 136 17 chr11 120661064 120661151 -1182705 - L1M4b LINE L1 -4951 2151 2053 2 1505 533 262 159 50 chr11 120661151 120661352 -1182504 - ID_B1 SINE B4 0 224 2 2 1505 321 259 136 17 chr11 120661352 120661382 -1182474 - L1M4b LINE L1 -5050 2052 2020 2 1505 653 294 109 0 chr11 120661780 120662028 -1181828 - L1M4b LINE L1 -7030 304 30 2 1505 446 248 26 20 chr11 120662127 120662253 -1181603 - PB1D9 SINE Alu -7 120 3 2 1505 522 248 93 0 chr11 120662353 120662482 -1181374 - B1F1 SINE Alu -8 141 1 2 1505 636 254 4 0 chr11 120662660 120662914 -1180942 + (TG)n Simple_repeat Simple_repeat 1 255 0 2 1505 249 347 35 23 chr11 120663021 120663192 -1180664 - L1MC LINE L1 -2361 5521 5349 2 1505 257 316 78 13 chr11 120663203 120663357 -1180499 - L1MA10 LINE L1 -2 6332 6169 2 1505 400 251 111 66 chr11 120663413 120663598 -1180258 - L1M5 LINE L1 -318 5855 5652 2 1505 1203 82 0 0 chr11 120663598 120663745 -1180111 - B1_Mus1 SINE Alu 0 148 2 2 1505 400 250 109 67 chr11 120663745 120663792 -1180064 - L1M5 LINE L1 -512 5652 5609 2 1505 517 269 7 56 chr11 120663792 120663934 -1179922 - ID_B1 SINE B4 -9 215 81 2 1505 1191 41 7 20 chr11 120663956 120664105 -1179751 - B1_Mm SINE Alu 0 147 1 2 1505 486 0 0 0 chr11 120664157 120664211 -1179645 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1505 503 242 58 0 chr11 120664214 120664334 -1179522 - MTD LTR MaLR -62 357 231 2 1505 683 43 32 0 chr11 120664517 120664610 -1179246 + (GAGAA)n Simple_repeat Simple_repeat 5 100 0 2 1505 973 132 15 143 chr11 120664619 120664749 -1179107 + B2_Mm2 SINE B2 1 121 -74 2 1505 1258 34 0 0 chr11 120664749 120664895 -1178961 - B1_Mm SINE Alu 0 147 2 2 1505 973 132 15 143 chr11 120664895 120664967 -1178889 + B2_Mm2 SINE B2 122 177 -18 2 1505 849 175 186 0 chr11 120664977 120665154 -1178702 - B3 SINE B2 -6 210 1 2 1505 295 296 77 66 chr11 120665157 120665226 -1178630 - L1MDa LINE L1 -4413 2220 2162 2 1505 263 222 242 11 chr11 120665226 120665317 -1178539 - PB1D10 SINE Alu -5 112 1 2 1505 295 296 77 66 chr11 120665317 120665428 -1178428 - L1MDa LINE L1 -4472 2161 2038 2 1505 1174 62 14 0 chr11 120665494 120665638 -1178218 - B1_Mus2 SINE Alu 0 147 2 2 1505 788 199 7 7 chr11 120665649 120665791 -1178065 - B1_Mur4 SINE Alu -7 143 2 3 1505 216 312 0 0 chr11 120665926 120665974 -1177882 + C-rich Low_complexity Low_complexity 3 50 0 3 1505 281 246 31 0 chr11 120665989 120666054 -1177802 - ID4_ SINE ID -15 68 2 3 1505 546 189 8 51 chr11 120666931 120667048 -1176808 - PB1D10 SINE Alu -4 113 2 3 1505 356 162 240 10 chr11 120667298 120667398 -1176458 - RSINE1 SINE B4 -35 130 8 3 1505 229 305 0 0 chr11 120673061 120673120 -1170736 - RMER1A Other Other -612 418 360 3 1505 349 288 0 12 chr11 120683263 120683344 -1160512 - ID4 SINE ID -2 81 2 3 1505 23 33 0 0 chr11 120685531 120685561 -1158295 + GC_rich Low_complexity Low_complexity 1 30 0 3 1505 374 232 80 10 chr11 120689071 120689171 -1154685 - B1_Mus2 SINE Alu -36 111 5 3 1505 230 264 54 54 chr11 120689112 120689224 -1154632 - B4 SINE B4 -143 149 38 3 1505 548 248 9 0 chr11 120689508 120689617 -1154239 - PB1D7 SINE Alu -10 110 1 3 1505 186 43 0 0 chr11 120693692 120693715 -1150141 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1505 558 167 157 8 chr11 120693920 120694041 -1149815 - B1_Mur4 SINE Alu -2 148 10 3 1505 1047 110 0 0 chr11 120694131 120694277 -1149579 + B1_Mus2 SINE Alu 2 147 0 3 1505 385 277 45 0 chr11 120694359 120694471 -1149385 + PB1D10 SINE Alu 1 117 0 3 1505 1219 61 0 7 chr11 120694518 120694667 -1149189 + B1_Mus1 SINE Alu 1 148 0 3 1505 241 291 72 64 chr11 120694671 120694796 -1149060 + RSINE1 SINE B4 2 127 -38 3 1505 387 60 0 0 chr11 120694831 120694881 -1148975 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1505 281 313 101 82 chr11 120695000 120695089 -1148767 + L1M4 LINE L1 3891 3980 -2166 3 1505 383 253 0 0 chr11 120695089 120695168 -1148688 - ID4_ SINE ID -1 82 4 3 1505 281 313 101 82 chr11 120695168 120695395 -1148461 + L1M4 LINE L1 3981 4213 -1933 3 1505 228 67 0 0 chr11 120696056 120696086 -1147770 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1505 393 319 48 7 chr11 120696113 120696258 -1147598 - RSINE1 SINE B4 -13 152 2 3 1505 852 197 121 43 chr11 120696378 120696585 -1147271 - ID_B1 SINE B4 0 224 2 3 1505 502 261 1 49 chr11 120696604 120696742 -1147114 - PB1D10 SINE Alu -9 138 10 3 1505 453 320 23 0 chr11 120696653 120696781 -1147075 - ID_B1 SINE B4 -45 179 49 3 1505 659 268 36 10 chr11 120696793 120696985 -1146871 + B3 SINE B2 20 216 0 3 1505 682 196 27 20 chr11 120697062 120697208 -1146648 - B1F2 SINE Alu -2 147 1 3 1505 555 252 14 61 chr11 120697455 120697603 -1146253 - B1F SINE Alu -8 141 1 3 1505 1272 41 0 0 chr11 120697644 120697791 -1146065 + B1_Mm SINE Alu 1 147 0 3 1505 225 0 0 0 chr11 120697791 120697816 -1146040 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1505 564 303 51 10 chr11 120697827 120698024 -1145832 - B3 SINE B2 -11 205 1 3 1505 802 141 0 134 chr11 120698191 120698363 -1145493 - B1_Mur4 SINE Alu -1 149 1 3 1505 1209 68 0 0 chr11 120698408 120698555 -1145301 + B1_Mus2 SINE Alu 1 147 0 3 1505 324 70 0 0 chr11 120698555 120698598 -1145258 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1505 389 155 56 0 chr11 120698615 120698686 -1145170 + PB1D9 SINE Alu 1 75 -45 3 1505 210 143 0 0 chr11 120698687 120698722 -1145134 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 1505 1135 75 0 33 chr11 120698728 120698880 -1144976 + B1_Mus1 SINE Alu 2 148 0 3 1505 283 269 50 25 chr11 120698922 120699002 -1144854 + PB1D7 SINE Alu 2 83 -37 3 1505 1310 24 0 12 chr11 120699065 120699225 -1144631 + B2_Mm1a SINE B2 1 160 -33 3 1505 270 0 0 0 chr11 120699225 120699255 -1144601 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 1505 345 24 0 0 chr11 120699727 120699769 -1144087 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1505 243 288 0 52 chr11 120699822 120699899 -1143957 + MER21B LTR ERV1 1 73 -790 3 1505 238 224 104 0 chr11 120700027 120700094 -1143762 - MER2 DNA MER2_type -181 164 91 3 1505 368 234 0 25 chr11 120700415 120700494 -1143362 + ID4_ SINE ID 4 80 -3 3 1505 354 188 43 0 chr11 120701185 120701254 -1142602 + ID_B1 SINE B4 86 157 -67 3 1505 1274 20 7 0 chr11 120701333 120701479 -1142377 - B1_Mus1 SINE Alu 0 148 2 3 1505 544 222 230 0 chr11 120701532 120701658 -1142198 + B3 SINE B2 54 208 -8 3 1505 495 87 0 0 chr11 120701919 120701988 -1141868 + (GGAAA)n Simple_repeat Simple_repeat 3 71 0 3 1505 415 282 165 6 chr11 120701989 120702171 -1141685 - ID_B1 SINE B4 -13 211 1 3 1505 687 132 72 65 chr11 120702226 120702364 -1141492 - B1_Mus2 SINE Alu 0 147 9 3 1505 270 56 0 0 chr11 120702595 120702631 -1141225 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1505 215 190 52 0 chr11 120702772 120702830 -1141026 + B1F1 SINE Alu 88 148 -1 3 1505 2451 119 54 20 chr11 120702853 120703297 -1140559 - L1_Mur1 LINE L1 -400 5486 5028 3 1505 2013 93 34 3 chr11 120703288 120703579 -1140277 + L1_Mur1 LINE L1 5499 5798 -88 3 1505 1227 54 0 0 chr11 120703579 120703726 -1140130 + B1_Mus2 SINE Alu 1 147 0 3 1505 252 148 0 0 chr11 120703726 120703787 -1140069 + (A)n Simple_repeat Simple_repeat 1 61 0 3 1505 1275 102 11 0 chr11 120703797 120703973 -1139883 + B2_Mm1t SINE B2 2 179 -14 3 1505 306 104 25 69 chr11 120704004 120704122 -1139734 + B2_Mm2 SINE B2 47 195 0 3 1505 6795 99 55 11 chr11 120704128 120705207 -1138649 + Lx3C LINE L1 5783 6908 -68 3 1505 281 26 0 26 chr11 120705231 120705270 -1138586 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1505 1175 62 7 0 chr11 120705278 120705423 -1138433 + B1_Mus2 SINE Alu 1 146 -1 3 1505 263 128 0 0 chr11 120705633 120705672 -1138184 - B1_Mus1 SINE Alu -108 40 2 3 1505 402 103 472 8 chr11 120705749 120705876 -1137980 + URR1A DNA MER1_type 5 190 -36 3 1505 198 0 0 0 chr11 120705876 120705898 -1137958 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1505 876 118 15 0 chr11 120705898 120706034 -1137822 - B1_Mus1 SINE Alu 0 148 11 3 1505 555 130 22 0 chr11 120706147 120706239 -1137617 - B1_Mur2 SINE Alu 0 149 56 3 1505 1183 75 0 0 chr11 120706239 120706385 -1137471 + B1_Mus2 SINE Alu 2 147 0 3 1505 291 157 0 0 chr11 120706385 120706436 -1137420 + A-rich Low_complexity Low_complexity 1 51 0 3 1505 331 231 0 15 chr11 120706440 120706506 -1137350 - PB1D9 SINE Alu -55 65 1 3 1505 395 38 19 0 chr11 120706514 120706567 -1137289 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 3 1505 1022 132 69 32 chr11 120706568 120706756 -1137100 - B2_Mm2 SINE B2 0 195 1 3 1505 262 303 0 13 chr11 120706961 120707038 -1136818 + T-rich Low_complexity Low_complexity 5 80 0 3 1505 259 114 0 43 chr11 120707044 120707090 -1136766 - B1F SINE Alu -7 142 99 3 1505 377 199 30 28 chr11 120707111 120707230 -1136626 - B1F1 SINE Alu -7 142 30 3 1505 252 0 0 0 chr11 120707769 120707797 -1136059 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1505 351 0 0 0 chr11 120707942 120707981 -1135875 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1505 31 26 0 0 chr11 120708023 120708061 -1135795 + AT_rich Low_complexity Low_complexity 1 38 0 3 1505 702 217 8 0 chr11 120708069 120708198 -1135658 - B3 SINE B2 -86 130 1 3 1505 485 230 31 16 chr11 120708940 120709064 -1134792 - B3 SINE B2 -80 136 11 3 1505 21 36 0 0 chr11 120709064 120709092 -1134764 + AT_rich Low_complexity Low_complexity 1 28 0 3 1505 213 39 0 0 chr11 120709095 120709121 -1134735 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1505 1244 55 0 0 chr11 120709121 120709267 -1134589 - B1_Mm SINE Alu 0 147 2 3 1505 660 144 119 8 chr11 120709279 120709405 -1134451 - B1_Mus1 SINE Alu -7 141 2 3 1505 222 102 0 71 chr11 120709407 120709449 -1134407 - B2_Mm2 SINE B2 -155 40 2 3 1505 1328 92 17 0 chr11 120709675 120709848 -1134008 + B2_Mm2 SINE B2 1 176 -19 3 1505 434 83 0 0 chr11 120709848 120709908 -1133948 - B1_Mus2 SINE Alu -87 60 1 3 1505 601 272 64 0 chr11 120709946 120710148 -1133708 - B3 SINE B2 -1 215 1 3 1505 547 262 80 7 chr11 120710165 120710315 -1133541 - RSINE1 SINE B4 -2 163 3 3 1505 440 165 214 0 chr11 120710337 120710440 -1133416 - B1_Mus2 SINE Alu 0 147 23 3 1505 1028 72 58 0 chr11 120710494 120710633 -1133223 - B1_Mm SINE Alu 0 147 1 3 1505 3404 196 97 60 chr11 120710633 120711487 -1132369 - RMER19B LTR ERVK -12 890 5 3 1505 379 234 64 18 chr11 120711530 120711639 -1132217 - PB1D9 SINE Alu -6 114 1 3 1505 407 248 36 18 chr11 120711718 120711829 -1132027 - B4A SINE B4 -178 114 2 3 1505 915 132 20 27 chr11 120711847 120711995 -1131861 + B1_Mus1 SINE Alu 1 147 -1 3 1505 309 315 0 0 chr11 120712375 120712464 -1131392 - B1F1 SINE Alu -48 101 13 3 1505 601 225 34 27 chr11 120713062 120713208 -1130648 + B1_Mur2 SINE Alu 2 148 -1 3 1505 429 191 22 22 chr11 120713262 120713353 -1130503 + ID_B1 SINE B4 124 214 -10 3 1505 210 71 0 0 chr11 120713353 120713381 -1130475 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 3 1505 239 197 60 15 chr11 120714303 120714370 -1129486 - ID2 SINE ID -1 82 13 3 1505 261 262 0 15 chr11 120714478 120714544 -1129312 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1505 225 316 0 0 chr11 120714835 120714892 -1128964 - PB1D7 SINE Alu -54 66 10 3 1505 277 314 29 29 chr11 120715674 120715848 -1128008 + G-rich Low_complexity Low_complexity 2 175 0 4 1505 311 284 6 12 chr11 120715795 120715959 -1127897 + (TG)n Simple_repeat Simple_repeat 1 163 0 4 1505 245 271 25 43 chr11 120715906 120716068 -1127788 + G-rich Low_complexity Low_complexity 4 162 0 4 1505 202 320 0 45 chr11 120716081 120716235 -1127621 + G-rich Low_complexity Low_complexity 5 151 0 4 1505 306 0 0 0 chr11 120716247 120716281 -1127575 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1505 264 287 16 54 chr11 120716309 120716378 -1127478 + G-rich Low_complexity Low_complexity 3 69 0 4 1505 204 40 0 0 chr11 120716378 120716403 -1127453 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1505 264 287 16 54 chr11 120716403 120716517 -1127339 + G-rich Low_complexity Low_complexity 70 179 0 4 1505 436 253 11 11 chr11 120716555 120716735 -1127121 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1505 380 282 29 12 chr11 120716671 120716843 -1127013 + G-rich Low_complexity Low_complexity 6 180 0 4 1505 201 197 0 0 chr11 120716876 120716947 -1126909 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1505 207 0 0 0 chr11 120716991 120717014 -1126842 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1505 304 264 23 47 chr11 120717039 120717150 -1126706 + G-rich Low_complexity Low_complexity 2 106 0 4 1505 207 0 0 0 chr11 120717150 120717173 -1126683 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1505 304 264 23 47 chr11 120717173 120717232 -1126624 + G-rich Low_complexity Low_complexity 107 168 0 4 188 279 274 0 39 chr11 120717211 120717393 -1126463 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 4 1506 220 175 19 76 chr11 120717386 120717491 -1126365 + (TAGGG)n Simple_repeat Simple_repeat 3 101 0 4 1506 1388 81 43 0 chr11 120719363 120719548 -1124308 + B2_Mm1t SINE B2 1 193 0 4 1506 460 207 82 49 chr11 120719906 120720028 -1123828 + B3 SINE B2 1 126 -90 4 1506 1256 190 68 68 chr11 120720003 120720130 -1123726 + ORR1D1 LTR MaLR 24 143 -231 4 1506 896 163 13 20 chr11 120720130 120720280 -1123576 - B1_Mur4 SINE Alu -1 149 1 4 1506 1256 190 68 68 chr11 120720280 120720503 -1123353 + ORR1D1 LTR MaLR 144 374 0 4 1506 827 174 0 0 chr11 120720529 120720667 -1123189 - B1_Mus2 SINE Alu 0 147 10 4 1506 338 259 0 122 chr11 120720574 120720697 -1123159 - MT2B LTR ERVL -344 257 150 4 1506 257 171 36 24 chr11 120720706 120720790 -1123066 + CT-rich Low_complexity Low_complexity 1 85 0 4 1506 441 259 26 35 chr11 120720790 120720906 -1122950 - PB1 SINE Alu -8 119 5 4 1506 509 280 0 43 chr11 120721151 120721289 -1122567 - B1_Mus2 SINE Alu -14 133 2 4 1506 342 0 0 0 chr11 120722353 120722391 -1121465 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1506 261 0 0 0 chr11 120723125 120723154 -1120702 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1506 847 157 0 22 chr11 120723154 120723291 -1120565 - B1_Mus1 SINE Alu -14 134 1 4 1506 21 57 0 0 chr11 120723329 120723364 -1120492 + AT_rich Low_complexity Low_complexity 1 35 0 4 1506 1129 170 46 0 chr11 120723427 120723621 -1120235 - B3 SINE B2 -10 206 4 4 1506 22 35 0 0 chr11 120723762 120723791 -1120065 + AT_rich Low_complexity Low_complexity 1 29 0 4 1506 252 0 0 0 chr11 120724624 120724652 -1119204 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1506 1259 28 7 0 chr11 120724652 120724797 -1119059 - B1_Mm SINE Alu 0 147 2 4 1506 520 141 94 42 chr11 120725482 120725578 -1118278 - B1_Mur1 SINE Alu 0 149 49 4 1506 297 0 0 0 chr11 120725594 120725627 -1118229 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1506 1351 58 15 69 chr11 120725655 120725859 -1117997 - B2_Mm1a SINE B2 0 193 1 4 1506 229 214 45 45 chr11 120725859 120725938 -1117918 + MTC-int LTR MaLR 1007 1086 -172 4 1506 1769 48 9 4 chr11 120726168 120726397 -1117459 - L1_Mus3 LINE L1 -5 6633 6404 4 1506 978 128 7 26 chr11 120726400 120726553 -1117303 - B1_Mur4 SINE Alu 0 150 1 4 1506 732 209 28 74 chr11 120726725 120726942 -1116914 + MTD LTR MaLR 34 240 -179 4 1506 907 226 16 21 chr11 120726962 120727152 -1116704 + B3 SINE B2 28 216 0 4 1506 750 231 86 33 chr11 120727168 120727378 -1116478 + MTD LTR MaLR 199 419 0 4 1506 509 187 126 36 chr11 120727379 120727490 -1116366 - B3A SINE B2 -77 121 1 4 1506 1177 74 0 7 chr11 120728067 120728216 -1115640 + B1_Mus1 SINE Alu 1 148 0 4 1506 425 143 39 39 chr11 120728438 120728731 -1115125 + (CA)n Simple_repeat Simple_repeat 1 293 0 4 1506 839 220 131 0 chr11 120728814 120729005 -1114851 + B3 SINE B2 1 216 0 4 1506 276 221 82 21 chr11 120729172 120729269 -1114587 - PB1D7 SINE Alu -2 118 16 4 1506 1574 42 21 0 chr11 120729332 120729521 -1114335 - B2_Mm1t SINE B2 0 193 1 4 1506 1331 85 11 6 chr11 120729794 120729972 -1113884 + B2_Mm1t SINE B2 1 179 -14 4 1506 329 132 0 90 chr11 120730019 120730090 -1113766 + B2_Mm2 SINE B2 47 109 -107 4 1506 246 128 0 0 chr11 120730101 120730140 -1113716 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1506 580 190 138 0 chr11 120730752 120730868 -1112988 + B1_Mus2 SINE Alu 1 132 -15 4 1506 666 150 26 9 chr11 120731035 120731264 -1112592 + (CA)n Simple_repeat Simple_repeat 1 233 0 4 1506 251 331 180 39 chr11 120731392 120731647 -1112209 - B4A SINE B4 0 292 2 4 1506 387 239 54 5 chr11 120731814 120731930 -1111926 + PB1D10 SINE Alu 11 136 -12 4 1506 336 323 0 0 chr11 120732368 120732383 -1111473 - ID_B1 SINE B4 -49 175 84 4 1506 396 234 0 0 chr11 120732383 120732460 -1111396 - PB1D10 SINE Alu -38 79 3 4 1506 377 197 14 0 chr11 120732512 120732583 -1111273 + ID4 SINE ID 2 73 -10 4 1506 975 239 54 0 chr11 120733191 120733396 -1110460 - B3 SINE B2 0 216 1 4 1506 219 284 90 11 chr11 120733410 120733499 -1110357 - B1F SINE Alu -51 98 3 4 1506 870 255 55 46 chr11 120733492 120733710 -1110146 + ID_B1 SINE B4 2 221 -3 4 1506 777 164 243 24 chr11 120733719 120733888 -1109968 + B3 SINE B2 5 210 -6 4 1506 270 0 0 0 chr11 120734140 120734170 -1109686 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1506 1131 73 0 0 chr11 120734170 120734307 -1109549 - B1_Mm SINE Alu -10 137 1 4 1506 474 236 37 19 chr11 120734310 120734418 -1109438 - PB1D7 SINE Alu -2 118 9 4 1506 387 156 355 9 chr11 120737189 120737218 -1106638 - B1_Mus1 SINE Alu 0 148 121 4 1506 1241 120 15 15 chr11 120737218 120737397 -1106459 + B2_Mm2 SINE B2 1 180 -15 4 1506 219 36 0 0 chr11 120737397 120737425 -1106431 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 4 1506 1241 120 15 15 chr11 120737425 120737440 -1106416 + B2_Mm2 SINE B2 181 195 0 4 1506 387 156 355 9 chr11 120737440 120737520 -1106336 - B1_Mus1 SINE Alu -28 120 2 4 1506 618 157 149 0 chr11 120737856 120737977 -1105879 - B1_Mus1 SINE Alu 0 148 10 4 1506 234 244 210 10 chr11 120738062 120738257 -1105599 - L1MC4a LINE L1 -367 7515 7282 4 1506 390 359 71 7 chr11 120738442 120738596 -1105260 - RSINE1 SINE B4 0 165 2 4 1506 22 0 0 0 chr11 120739085 120739107 -1104749 + AT_rich Low_complexity Low_complexity 1 22 0 4 1506 899 185 14 0 chr11 120740658 120740804 -1103052 + B1_Mur3 SINE Alu 2 149 0 4 1506 596 272 152 0 chr11 120740870 120741061 -1102795 + ID_B1 SINE B4 2 221 -3 4 1506 238 292 85 61 chr11 120741527 120741691 -1102165 + L1M5 LINE L1 5319 5486 -958 4 1506 192 125 0 0 chr11 120741857 120741889 -1101967 + (CTG)n Simple_repeat Simple_repeat 3 34 0 4 1506 600 306 87 25 chr11 120741892 120742167 -1101689 + L1MB7 LINE L1 5571 5862 -322 4 1506 578 124 160 9 chr11 120742178 120742284 -1101572 + B1F2 SINE Alu 28 149 0 4 1506 390 287 7 34 chr11 120742429 120742577 -1101279 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 1506 629 219 62 0 chr11 120742600 120742728 -1101128 - ID_B1 SINE B4 -8 216 81 4 1506 1081 83 0 0 chr11 120742765 120742898 -1100958 + B1_Mus2 SINE Alu 2 134 -13 4 1506 287 25 0 24 chr11 120742898 120742939 -1100917 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1506 456 67 0 0 chr11 120743407 120743467 -1100389 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1506 267 31 0 0 chr11 120743467 120743498 -1100358 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1506 404 152 25 0 chr11 120743580 120743659 -1100197 + GA-rich Low_complexity Low_complexity 4 84 0 4 1506 180 0 0 0 chr11 120743782 120743802 -1100054 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 1506 238 184 21 24 chr11 120743847 120743918 -1099938 + B1F SINE Alu 40 109 -8 4 1506 1115 190 28 23 chr11 120743937 120744152 -1099704 + B3 SINE B2 1 216 0 4 1506 258 209 0 0 chr11 120744588 120744631 -1099225 + PB1 SINE Alu 23 65 -62 4 1506 641 146 19 0 chr11 120744754 120744857 -1098999 + B1_Mur4 SINE Alu 6 110 -40 4 1506 304 304 43 17 chr11 120744872 120744989 -1098867 + L1MD LINE L1 3451 3570 -2576 4 1506 279 196 0 0 chr11 120745015 120745071 -1098785 + L1M5 LINE L1 3639 3694 -2452 4 1506 1256 232 123 6 chr11 120745589 120745914 -1097942 + ORR1D2 LTR MaLR 8 370 0 4 1506 1001 59 21 35 chr11 120746298 120746315 -1097541 - B1_Mus2 SINE Alu 0 147 135 4 1506 199 0 65 0 chr11 120746315 120746346 -1097510 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 1506 1001 59 21 35 chr11 120746346 120746469 -1097387 - B1_Mus2 SINE Alu -13 134 9 4 1506 458 330 55 18 chr11 120747765 120747984 -1095872 + RMER15 LTR ERVL 347 573 -2 4 1506 1221 69 0 0 chr11 120748236 120748381 -1095475 - B1_Mus1 SINE Alu -2 146 2 4 1506 922 189 194 0 chr11 120748390 120748570 -1095286 - B3 SINE B2 0 216 2 4 1506 964 209 23 41 chr11 120748917 120749136 -1094720 - B3 SINE B2 -1 215 1 4 1506 423 0 0 0 chr11 120749608 120749655 -1094201 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1506 731 248 14 0 chr11 120749658 120749799 -1094057 - RSINE1 SINE B4 -20 145 3 4 1506 2032 141 189 0 chr11 120751547 120751901 -1091955 + MTC LTR MaLR 1 421 0 4 1506 1042 59 82 0 chr11 120752040 120752175 -1091681 - B1_Mus1 SINE Alu 0 148 3 5 1506 896 273 133 47 chr11 120752179 120752606 -1091250 - MLT1C LTR MaLR 0 467 4 5 1506 1181 69 7 0 chr11 120752750 120752894 -1090962 - B1_Mus2 SINE Alu 0 147 3 5 1506 508 206 191 0 chr11 120752939 120753075 -1090781 + RSINE1 SINE B4 4 165 0 5 1506 36 0 0 0 chr11 120753082 120753118 -1090738 + AT_rich Low_complexity Low_complexity 1 36 0 5 1506 234 263 100 50 chr11 120753236 120753316 -1090540 + ID_B1 SINE B4 79 162 -62 5 1506 402 209 57 23 chr11 120753245 120753333 -1090523 + PB1D9 SINE Alu 6 96 -24 5 1506 535 288 35 41 chr11 120753301 120753328 -1090528 + ID_B1 SINE B4 56 224 0 5 1506 918 182 0 0 chr11 120753328 120753471 -1090385 + B1_Mur4 SINE Alu 8 150 0 5 1506 259 200 137 41 chr11 120753467 120753481 -1090375 + ID_B1 SINE B4 143 222 -2 5 1506 373 102 51 0 chr11 120753481 120753540 -1090316 + B1_Mur2 SINE Alu 87 148 -1 5 1506 560 225 45 0 chr11 120754070 120754181 -1089675 - PB1D10 SINE Alu -1 116 1 5 1506 303 28 0 0 chr11 120754193 120754229 -1089627 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1506 1382 84 5 16 chr11 120754329 120754523 -1089333 + B2_Mm1t SINE B2 1 192 -1 5 1506 1643 47 0 0 chr11 120754584 120754776 -1089080 - B2_Mm1a SINE B2 -1 192 1 5 1506 559 150 203 24 chr11 120754806 120754929 -1088927 - B1_Mur1 SINE Alu -1 148 4 5 1506 256 230 157 66 chr11 120754929 120754956 -1088900 - MT2B LTR ERVL -417 184 147 5 1506 186 43 0 0 chr11 120755219 120755242 -1088614 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 5 1506 506 259 63 28 chr11 120755396 120755539 -1088317 + RSINE1 SINE B4 2 149 -16 5 1506 231 257 108 0 chr11 120757325 120757399 -1086457 + L1MD LINE L1 2528 2609 -3537 5 1506 339 327 71 40 chr11 120757687 120758009 -1085847 + L1M5 LINE L1 2958 3289 -2857 5 1506 1467 68 0 0 chr11 120758148 120758325 -1085531 + B2_Mm1a SINE B2 2 178 -15 5 1506 217 0 0 57 chr11 120758327 120758362 -1085494 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1506 827 75 8 0 chr11 120758632 120758752 -1085104 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 5 1506 423 273 34 61 chr11 120758752 120758890 -1084966 - B1_Mur2 SINE Alu -8 141 6 5 1506 242 267 264 11 chr11 120760454 120760545 -1083311 - PB1D10 SINE Alu -3 114 1 5 1506 226 348 29 0 chr11 120760491 120760560 -1083296 - ID_B1 SINE B4 -89 135 65 5 1506 620 59 0 8 chr11 120760601 120760698 -1083158 - B1_Mur4 SINE Alu 0 150 57 5 1506 387 196 138 21 chr11 120760681 120760775 -1083081 + PB1D10 SINE Alu 12 116 -1 5 1506 316 241 62 12 chr11 120761036 120761116 -1082740 - B3A SINE B2 -113 85 2 5 1506 1631 36 16 0 chr11 120761232 120761424 -1082432 + B2_Mm2 SINE B2 1 195 0 5 1506 1594 52 0 0 chr11 120761428 120761621 -1082235 + B2_Mm1t SINE B2 1 193 0 5 1506 452 260 25 29 chr11 120761837 120761975 -1081881 + PB1D10 SINE Alu 1 149 0 5 1506 237 285 144 12 chr11 120762011 120762178 -1081678 + L1MB3 LINE L1 5630 5818 -353 5 1506 417 275 61 34 chr11 120762293 120762440 -1081416 - B4 SINE B4 0 292 142 5 1506 233 312 37 43 chr11 120762492 120762656 -1081200 + L1MB3 LINE L1 5836 5998 -185 5 1506 248 283 32 48 chr11 120762726 120762789 -1081067 + PB1D10 SINE Alu 12 73 -44 5 1506 560 310 5 7 chr11 120762808 120762959 -1080897 + ID_B1 SINE B4 90 237 -55 5 1506 573 235 0 0 chr11 120764222 120764324 -1079532 - RSINE1 SINE B4 -61 104 3 5 1506 744 129 0 17 chr11 120765060 120765167 -1078689 + B1_Mus2 SINE Alu 29 135 -12 5 1506 180 0 0 0 chr11 120765167 120765187 -1078669 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 5 1506 225 65 0 0 chr11 120765187 120765218 -1078638 + (ACTG)n Simple_repeat Simple_repeat 3 33 0 5 1506 268 322 44 0 chr11 120765432 120765522 -1078334 + RCHARR1 DNA MER1_type 268 361 -613 5 1506 1047 46 0 23 chr11 120765577 120765710 -1078146 + B1_Mus2 SINE Alu 18 147 0 5 1506 180 0 0 0 chr11 120766084 120766104 -1077752 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 5 1506 457 235 0 22 chr11 120766466 120766605 -1077251 + GA-rich Low_complexity Low_complexity 4 139 0 5 1506 314 275 10 45 chr11 120766628 120766743 -1077113 + PB1D7 SINE Alu 10 120 0 5 1506 181 208 157 104 chr11 120767188 120767322 -1076534 + L2 LINE L2 2813 2953 -466 5 1506 493 236 0 68 chr11 120768245 120768363 -1075493 - PB1D7 SINE Alu -8 112 3 5 1506 974 43 0 0 chr11 120768627 120768743 -1075113 - B1_Mus2 SINE Alu -13 134 19 5 1506 388 257 198 26 chr11 120768764 120768956 -1074900 - RMER20B LTR ERVK -264 363 139 5 1506 852 155 0 23 chr11 120769040 120769172 -1074684 - B3 SINE B2 -87 129 1 5 1506 677 230 83 20 chr11 120769191 120769395 -1074461 + ERVL-int LTR ERVL 2550 2766 -2991 5 1506 1093 202 181 20 chr11 120769396 120769694 -1074162 - MTD LTR MaLR 0 419 74 5 1506 514 268 46 23 chr11 120769701 120769831 -1074025 + ETnERV2-int LTR ERVK 7070 7202 -204 5 1506 297 302 31 8 chr11 120770400 120770527 -1073329 + RMER16-int LTR ERVK 181 310 -6934 5 1506 1300 231 100 28 chr11 120770751 120771246 -1072610 + RMER16-int LTR ERVK 241 668 -5469 5 1506 446 178 93 0 chr11 120771246 120771364 -1072492 + RMER16-int LTR ERVK 1721 1849 -5557 5 1506 352 259 0 59 chr11 120771375 120771483 -1072373 + RMER16-int LTR ERVK 2454 2653 -3155 5 1506 5141 206 109 93 chr11 120771503 120773645 -1070211 + RLTR45-int LTR ERVK 4350 6524 -720 5 1506 3794 185 27 10 chr11 120773693 120774391 -1069465 + RLTR45-int LTR ERVK 6493 7202 -204 5 1506 361 193 6 0 chr11 120774972 120775043 -1068813 + ERVL-int LTR ERVL 2887 2949 -2718 5 1506 296 131 357 0 chr11 120775147 120775231 -1068625 - B1F2 SINE Alu -2 115 2 5 1506 275 254 0 0 chr11 120775177 120775244 -1068612 - B4 SINE B4 -152 140 74 5 1506 749 197 14 28 chr11 120775545 120775686 -1068170 - B1_Mur2 SINE Alu -2 147 9 5 1506 561 118 152 29 chr11 120775693 120775798 -1068058 - BC1_Mm scRNA scRNA -34 118 1 5 1506 251 191 191 0 chr11 120775799 120775862 -1067994 - B1_Mur3 SINE Alu -74 75 1 5 1506 425 296 104 6 chr11 120775864 120776037 -1067819 + ERVL-int LTR ERVL 3320 3509 -2248 5 1506 803 203 108 15 chr11 120776169 120776364 -1067492 + ERVL-int LTR ERVL 3701 3913 -1844 5 1506 2323 271 149 45 chr11 120776372 120776885 -1066971 + ERVL-int LTR ERVL 4086 4634 -1123 5 1506 1250 83 65 0 chr11 120776885 120777054 -1066802 - B2_Mm2 SINE B2 -14 181 2 5 1506 2323 271 149 45 chr11 120777054 120777528 -1066328 + ERVL-int LTR ERVL 4635 5176 -581 5 1506 964 46 128 15 chr11 120777606 120777739 -1066117 + B1_Mus1 SINE Alu 1 148 0 5 1506 243 0 0 0 chr11 120777739 120777766 -1066090 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1506 458 227 246 17 chr11 120778336 120778511 -1065345 + B3 SINE B2 2 216 0 5 1506 1260 87 33 0 chr11 120778529 120778713 -1065143 - B2_Mm1t SINE B2 -2 191 2 5 1506 352 254 71 71 chr11 120778819 120778946 -1064910 + RSINE1 SINE B4 37 163 -2 5 1506 1354 95 0 5 chr11 120779357 120779547 -1064309 + B2_Mm2 SINE B2 2 190 -5 5 1506 1157 79 42 0 chr11 120779711 120779876 -1063980 + B2_Mm2 SINE B2 1 172 -23 5 1506 216 0 0 0 chr11 120779881 120779905 -1063951 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1506 553 202 39 0 chr11 120779935 120780039 -1063817 - B1_Mur4 SINE Alu -42 108 1 5 1506 765 284 135 8 chr11 120780223 120780489 -1063367 + MLT2B2 LTR ERVL 1 300 -215 5 1506 1123 82 0 0 chr11 120781139 120781286 -1062570 + B1_Mus2 SINE Alu 1 147 0 5 1506 686 176 34 0 chr11 120781313 120781432 -1062424 + B1_Mur1 SINE Alu 2 124 -25 5 1506 537 137 22 74 chr11 120781588 120781726 -1062130 + PB1D9 SINE Alu 27 147 -2 5 1506 435 336 53 68 chr11 120781727 120781897 -1061959 + L1MDa LINE L1 1315 1485 -5148 5 1506 729 128 168 0 chr11 120781897 120782022 -1061834 + B1_Mus1 SINE Alu 2 147 -1 5 1506 435 336 53 68 chr11 120782022 120782132 -1061724 + L1MDa LINE L1 1486 1591 -5042 5 1506 1123 48 0 20 chr11 120782254 120782402 -1061454 + B1_Mus2 SINE Alu 3 147 0 5 1506 428 239 8 41 chr11 120782435 120782557 -1061299 + RMER5 LTR ERV1 158 275 -259 5 1506 553 194 131 8 chr11 120782562 120782692 -1061164 + B1_Mm SINE Alu 2 147 0 5 1506 276 224 0 0 chr11 120783309 120783376 -1060480 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 5 1506 1041 145 0 0 chr11 120783377 120783556 -1060300 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1506 635 168 145 0 chr11 120783558 120783689 -1060167 - B1_Mur4 SINE Alu 0 150 1 5 1506 348 299 28 9 chr11 120783735 120783843 -1060013 - PB1D10 SINE Alu -7 110 1 5 1506 243 181 61 38 chr11 120784562 120784694 -1059162 + (TG)n Simple_repeat Simple_repeat 2 136 0 5 1506 541 239 85 20 chr11 120784810 120785011 -1058845 + B3 SINE B2 3 216 0 5 1506 359 238 193 14 chr11 120785722 120785867 -1057989 + MTEa LTR MaLR 204 374 -5 5 1506 211 54 0 51 chr11 120786239 120786278 -1057578 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1506 1090 68 0 13 chr11 120786653 120786802 -1057054 + B1_Mus2 SINE Alu 1 147 0 5 1506 623 116 9 0 chr11 120787057 120787169 -1056687 + (TC)n Simple_repeat Simple_repeat 2 114 0 5 1506 361 339 0 34 chr11 120787186 120787305 -1056551 + PB1D10 SINE Alu 2 116 -1 5 1506 1443 45 0 0 chr11 120788117 120788294 -1055562 + B2_Mm1a SINE B2 2 178 -15 5 1506 228 35 0 0 chr11 120788294 120788323 -1055533 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1506 1014 263 40 44 chr11 120788604 120788654 -1055202 - MTEa LTR MaLR 0 379 319 5 1506 708 98 0 0 chr11 120788654 120788756 -1055100 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 5 1506 1014 263 40 44 chr11 120788756 120789003 -1054853 - MTEa LTR MaLR -61 318 84 5 1506 1009 112 0 77 chr11 120789001 120789184 -1054672 + RLTR8 LTR ERVK 197 365 0 5 1506 3764 119 110 9 chr11 120789244 120789576 -1054280 + RMER6A LTR ERVK 1 375 -381 5 1506 207 0 0 0 chr11 120789576 120789599 -1054257 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1506 3764 119 110 9 chr11 120789599 120789929 -1053927 + RMER6A LTR ERVK 376 729 -27 5 1506 354 298 44 30 chr11 120790210 120790345 -1053511 + L1MC4a LINE L1 6306 6442 -1440 5 1506 986 191 103 18 chr11 120790352 120790624 -1053232 + MTD LTR MaLR 1 326 -93 5 1506 696 100 0 0 chr11 120790648 120790748 -1053108 + MTC LTR MaLR 1 100 -321 5 1506 644 181 17 0 chr11 120790748 120790864 -1052992 - B1_Mur4 SINE Alu -30 120 3 6 1506 518 189 9 0 chr11 120790945 120791056 -1052800 + CT-rich Low_complexity Low_complexity 2 113 0 6 1506 308 177 23 81 chr11 120791056 120791142 -1052714 - B1F2 SINE Alu -43 107 29 6 1506 3147 145 120 11 chr11 120791148 120791757 -1052099 - RLTR33 LTR ERVK 0 678 4 6 1506 283 242 63 48 chr11 120791933 120792059 -1051797 + L1MC4a LINE L1 7077 7204 -838 5 1506 1190 34 7 0 chr11 120792266 120792412 -1051444 + B1_Mus2 SINE Alu 1 147 0 6 1506 2022 112 94 6 chr11 120792420 120792762 -1051094 + ORR1C2 LTR MaLR 13 384 0 6 1506 350 263 35 9 chr11 120793228 120793343 -1050513 + L1MC4a LINE L1 7193 7310 -572 5 1506 1464 83 0 0 chr11 120793344 120793537 -1050319 + B2_Mm1t SINE B2 1 193 0 6 1506 726 140 50 29 chr11 120793556 120793696 -1050160 - B1_Mur2 SINE Alu -1 148 6 6 1506 406 280 126 0 chr11 120794878 120795021 -1048835 + RSINE1 SINE B4 3 163 -2 6 1506 2656 97 59 11 chr11 120795510 120795950 -1047906 - RMER4A LTR ERVK 0 466 6 6 1506 1082 65 0 0 chr11 120796020 120796158 -1047698 + B1_Mm SINE Alu 1 138 -9 6 1506 216 0 0 0 chr11 120796158 120796182 -1047674 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 6 1506 180 0 0 0 chr11 120796182 120796201 -1047655 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1506 1059 55 6 93 chr11 120796308 120796367 -1047489 + B1_Mus1 SINE Alu 2 52 -96 6 1506 251 28 0 27 chr11 120796367 120796404 -1047452 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1506 411 37 610 0 chr11 120796404 120796486 -1047370 - B1_Mus1 SINE Alu -13 135 4 6 1506 1059 55 6 93 chr11 120796486 120796586 -1047270 + B1_Mus1 SINE Alu 53 147 -1 6 1506 219 103 0 0 chr11 120796586 120796625 -1047231 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1506 781 243 176 19 chr11 120796719 120797042 -1046814 + MLT1B LTR MaLR 1 374 -16 6 1506 3450 35 28 9 chr11 120797557 120797985 -1045871 - RLTR10C LTR ERVK 0 436 1 6 1506 404 321 34 44 chr11 120798059 120798302 -1045554 - MLT1C LTR MaLR -135 255 24 6 1506 390 226 26 0 chr11 120798706 120798946 -1044910 + (CA)n Simple_repeat Simple_repeat 1 246 0 6 1506 496 206 0 32 chr11 120798961 120799147 -1044709 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1506 604 177 23 6 chr11 120799185 120799361 -1044495 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1506 920 143 14 0 chr11 120799818 120799965 -1043891 + B1_Mur4 SINE Alu 2 150 0 6 1506 792 142 22 17 chr11 120799996 120800175 -1043681 + G-rich Low_complexity Low_complexity 1 180 0 6 1506 1190 41 0 0 chr11 120801248 120801394 -1042462 + B1_Mm SINE Alu 2 147 0 6 1506 684 142 0 130 chr11 120801439 120801593 -1042263 + B1_Mur4 SINE Alu 17 150 0 6 1506 367 313 17 25 chr11 120801598 120801716 -1042140 + PB1D10 SINE Alu 1 117 0 6 1506 350 222 48 16 chr11 120801794 120801960 -1041896 + L1M2 LINE L1 4809 5047 -1099 6 1506 212 171 0 0 chr11 120801991 120802026 -1041830 + A-rich Low_complexity Low_complexity 1 35 0 6 1506 1081 69 14 0 chr11 120802095 120802239 -1041617 + B1_Mus2 SINE Alu 2 147 0 6 1506 567 311 22 60 chr11 120802416 120802658 -1041198 + B4A SINE B4 1 233 -59 6 1506 1237 34 0 0 chr11 120802658 120802806 -1041050 + B1_Mus1 SINE Alu 1 148 0 6 1506 423 0 0 0 chr11 120802806 120802853 -1041003 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 6 1506 567 311 22 60 chr11 120802853 120802876 -1040980 + B4A SINE B4 234 256 -36 6 1506 396 0 0 0 chr11 120802960 120803004 -1040852 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1506 756 311 17 78 chr11 120803033 120803064 -1040792 + L1MB8 LINE L1 5387 5420 -758 6 1506 1289 72 50 0 chr11 120803064 120803244 -1040612 + B2_Mm2 SINE B2 4 192 -3 6 1506 756 311 17 78 chr11 120803244 120803557 -1040299 + L1MB8 LINE L1 5421 5710 -468 6 1506 1175 84 33 6 chr11 120803564 120803744 -1040112 + B2_Mm2 SINE B2 2 186 -9 6 1506 1003 65 0 0 chr11 120803748 120803887 -1039969 - B2_Mm1a SINE B2 -5 188 50 6 1506 28 0 0 0 chr11 120803887 120803915 -1039941 + AT_rich Low_complexity Low_complexity 1 28 0 6 1506 1366 68 5 10 chr11 120803916 120804109 -1039747 + B2_Mm1a SINE B2 1 192 -1 6 1506 1019 97 14 0 chr11 120804124 120804269 -1039587 + B1_Mus2 SINE Alu 1 147 0 6 1506 438 222 150 44 chr11 120804272 120804432 -1039424 + L1MB8 LINE L1 5714 5890 -288 6 1506 246 330 20 20 chr11 120804432 120804534 -1039322 + ID_B1 SINE B4 75 176 -48 6 1506 441 202 10 21 chr11 120804454 120804550 -1039306 + PB1D10 SINE Alu 18 112 -5 6 1506 1100 76 0 0 chr11 120804554 120804699 -1039157 + B1_Mus2 SINE Alu 1 145 -2 6 1506 231 170 0 0 chr11 120804702 120804749 -1039107 + A-rich Low_complexity Low_complexity 1 47 0 6 1506 231 303 91 0 chr11 120804890 120804989 -1038867 + L1MB8 LINE L1 6007 6114 -60 6 1506 269 209 45 0 chr11 120805294 120805361 -1038495 - RSINE1 SINE B4 -21 144 75 6 1506 444 278 16 101 chr11 120805404 120805592 -1038264 - B4A SINE B4 -120 172 1 6 1506 243 321 200 6 chr11 120805592 120805665 -1038191 - B4 SINE B4 -65 227 130 6 1506 180 0 0 0 chr11 120805665 120805685 -1038171 + (CCA)n Simple_repeat Simple_repeat 2 21 0 6 1506 307 297 14 0 chr11 120805685 120805769 -1038087 - B4A SINE B4 -163 129 40 6 1506 180 0 0 0 chr11 120805826 120805846 -1038010 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1506 466 167 0 53 chr11 120806069 120806164 -1037692 + B3 SINE B2 2 91 -125 6 1506 1016 199 14 19 chr11 120806230 120806440 -1037416 - B3 SINE B2 -3 213 5 6 1506 342 115 0 0 chr11 120806626 120806678 -1037178 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1506 413 292 64 94 chr11 120809156 120809668 -1034188 + BGLII_A LTR ERVK 1 500 -28 6 1506 192 268 40 40 chr11 120809757 120809831 -1034025 - MIRc SINE MIR -128 140 67 6 1506 21 0 0 0 chr11 120810190 120810211 -1033645 + GC_rich Low_complexity Low_complexity 1 21 0 6 1506 22 0 0 0 chr11 120810399 120810421 -1033435 + GC_rich Low_complexity Low_complexity 1 22 0 6 1506 586 263 39 0 chr11 120814360 120814516 -1029340 - RSINE1 SINE B4 -3 162 1 6 1506 261 132 221 0 chr11 120814542 120814610 -1029246 + PB1D9 SINE Alu 25 107 -13 6 1506 1125 54 0 13 chr11 120814878 120815028 -1028828 - B1_Mus1 SINE Alu 0 148 1 6 1506 506 145 153 0 chr11 120822080 120822204 -1021652 - URR1B DNA MER1_type 0 225 83 6 1506 310 232 29 0 chr11 120822897 120822966 -1020890 + B1F SINE Alu 21 91 -58 6 1506 228 135 0 0 chr11 120824482 120824519 -1019337 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1506 647 271 58 29 chr11 120829498 120829703 -1014153 + B3 SINE B2 6 216 0 6 1506 684 238 106 16 chr11 120829943 120830131 -1013725 - B3 SINE B2 -11 205 1 6 1506 279 175 18 0 chr11 120830190 120830247 -1013609 - B1F SINE Alu 0 149 92 6 1506 1098 103 61 0 chr11 120830565 120830730 -1013126 + B2_Mm2 SINE B2 3 177 -18 6 1506 207 0 0 0 chr11 120830731 120830754 -1013102 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1506 253 279 162 61 chr11 120831446 120831545 -1012311 - PB1D7 SINE Alu -11 109 1 6 1506 696 186 42 21 chr11 120831566 120831709 -1012147 - B1_Mur1 SINE Alu -1 148 3 6 1506 670 246 41 16 chr11 120832039 120832233 -1011623 + B3 SINE B2 5 203 -13 6 1506 511 253 163 0 chr11 120832474 120832640 -1011216 - B3 SINE B2 -23 193 1 6 1506 254 239 12 123 chr11 120833197 120833278 -1010578 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 6 1506 291 185 111 0 chr11 120835007 120835061 -1008795 - B1_Mur4 SINE Alu -85 65 6 6 1506 1259 152 252 40 chr11 120836601 120836902 -1006954 + ORR1B2 LTR MaLR 3 367 0 6 1506 552 242 23 31 chr11 120837947 120838075 -1005781 + B1F SINE Alu 23 149 0 6 1506 220 316 26 0 chr11 120838081 120838157 -1005699 + ID4_ SINE ID 6 83 0 6 1506 306 0 0 0 chr11 120838208 120838242 -1005614 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1506 504 270 42 56 chr11 120839050 120839266 -1004590 + Lx7 LINE L1 7093 7305 -391 6 1506 357 125 0 0 chr11 120839415 120839471 -1004385 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1506 791 232 40 40 chr11 120839476 120839674 -1004182 + B3 SINE B2 2 199 -17 6 1506 537 198 185 31 chr11 120839890 120840020 -1003836 - B1_Mur4 SINE Alu 0 150 1 6 1506 286 211 133 0 chr11 120841577 120841667 -1002189 + B1_Mus1 SINE Alu 26 127 -21 6 1506 1722 21 0 0 chr11 120842732 120842924 -1000932 + B2_Mm1a SINE B2 2 193 0 6 1506 1268 181 195 63 chr11 120843218 120843665 -1000191 - Lx7 LINE L1 -154 7542 7037 6 1506 180 0 0 0 chr11 120844011 120844031 -999825 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1506 473 179 38 13 chr11 120845317 120845396 -998460 - B1_Mus1 SINE Alu -56 92 12 6 1506 306 171 31 163 chr11 120845326 120845424 -998432 - MT2B LTR ERVL -362 239 155 6 1506 356 235 111 10 chr11 120846604 120846703 -997153 - B1_Mus1 SINE Alu -34 114 6 6 1506 273 29 0 0 chr11 120846795 120846829 -997027 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 6 1506 486 0 0 0 chr11 120846829 120846883 -996973 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1506 694 254 48 38 chr11 120847464 120847673 -996183 + B3 SINE B2 2 212 -4 6 1506 693 157 111 7 chr11 120847691 120847826 -996030 + B1_Mur2 SINE Alu 1 149 0 6 188 260 316 72 21 chr11 120848333 120848430 -995426 + B4A SINE B4 184 285 -7 6 1507 571 156 397 13 chr11 120849032 120849188 -994668 + B3 SINE B2 1 216 0 6 1507 479 144 81 20 chr11 120849998 120850097 -993759 + PB1D9 SINE Alu 14 118 -2 6 1507 287 300 0 15 chr11 120851781 120851905 -991951 + C-rich Low_complexity Low_complexity 1 122 0 6 1507 210 213 16 32 chr11 120852016 120852079 -991777 + (CCCCG)n Simple_repeat Simple_repeat 3 64 0 6 1507 263 217 313 0 chr11 120852828 120852911 -990945 + PB1D10 SINE Alu 1 109 -8 6 1507 183 42 0 0 chr11 120855400 120855424 -988432 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1507 1227 68 0 0 chr11 120855427 120855574 -988282 - B1_Mus2 SINE Alu 0 147 1 6 1507 339 180 38 40 chr11 120855629 120855761 -988095 - B3 SINE B2 0 216 6 7 1507 1532 166 309 89 chr11 120856692 120856734 -987122 - MT2A LTR ERVL 0 533 458 7 1507 324 0 0 0 chr11 120856734 120856770 -987086 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1507 1532 166 309 89 chr11 120856770 120857164 -986692 - MT2A LTR ERVL -76 457 2 7 1507 252 0 0 0 chr11 120857595 120857623 -986233 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1507 466 267 90 22 chr11 120858589 120858723 -985133 + ID_B1 SINE B4 82 224 0 7 1507 278 263 92 0 chr11 120858728 120858804 -985052 + B4 SINE B4 4 86 -206 7 1507 449 172 250 0 chr11 120858824 120858940 -984916 + B1_Mur1 SINE Alu 2 146 -3 7 1507 1038 163 59 59 chr11 120859261 120859482 -984374 - URR1B DNA MER1_type -3 222 2 7 1507 1868 121 21 81 chr11 120859662 120859996 -983860 - ORR1A4 LTR MaLR -15 314 1 7 1507 10001 120 80 88 chr11 120859996 120861164 -982692 - ORR1A4-int LTR MaLR 0 1963 856 7 1507 1481 63 21 10 chr11 120861164 120861357 -982499 - B2_Mm2 SINE B2 0 195 1 7 1507 10001 120 80 88 chr11 120861357 120861393 -982463 - ORR1A4-int LTR MaLR -1108 855 736 7 1507 1199 29 43 0 chr11 120861393 120861533 -982323 - B1_Mus2 SINE Alu 0 147 2 7 1507 10001 120 80 88 chr11 120861533 120861875 -981981 - ORR1A4-int LTR MaLR -1228 735 438 7 1507 1037 88 0 0 chr11 120861875 120862012 -981844 - B1_Mus1 SINE Alu -10 138 2 7 1507 10001 120 80 88 chr11 120862012 120862441 -981415 - ORR1A4-int LTR MaLR -1526 437 2 7 1507 1938 141 54 9 chr11 120862441 120862756 -981100 - ORR1A4 LTR MaLR 0 329 1 7 1507 393 322 69 9 chr11 120862855 120862903 -980953 + B4 SINE B4 168 223 -69 7 1507 789 224 60 25 chr11 120862903 120863104 -980752 + B3 SINE B2 2 209 -7 7 1507 393 255 33 68 chr11 120863104 120863194 -980662 + B4 SINE B4 224 290 -2 7 1507 513 84 0 0 chr11 120863203 120863274 -980582 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1507 418 240 80 0 chr11 120863903 120864003 -979853 + RSINE1 SINE B4 43 150 -15 7 1507 371 344 26 19 chr11 120864451 120864605 -979251 + RSINE1 SINE B4 5 159 -6 7 1507 334 276 139 111 chr11 120865339 120865623 -978233 - ORR1E LTR MaLR 0 359 64 7 1507 314 206 39 52 chr11 120865881 120865958 -977898 + L1MC3 LINE L1 5980 6055 -289 7 1507 706 260 68 0 chr11 120865979 120866198 -977658 + L1MC3 LINE L1 6130 6363 -1422 7 1507 1055 257 68 10 chr11 120866589 120866896 -976960 + MLT1B LTR MaLR 66 390 0 7 1507 300 329 89 30 chr11 120866929 120867164 -976692 + L1MC3 LINE L1 6860 7108 -677 7 1507 547 269 138 82 chr11 120867173 120867515 -976341 + MTE2a LTR MaLR 1 364 -15 7 1507 332 245 111 94 chr11 120867607 120867668 -976188 + L1MC3 LINE L1 7266 7321 -464 7 1507 1538 174 116 21 chr11 120867668 120868003 -975853 - ORR1D2 LTR MaLR -3 367 1 7 1507 332 245 111 94 chr11 120868003 120868112 -975744 + L1MC3 LINE L1 7322 7439 -346 7 1507 886 245 28 9 chr11 120868209 120868427 -975429 - ID_B1 SINE B4 -2 222 1 7 1507 452 208 38 24 chr11 120868735 120868860 -974996 - PB1 SINE Alu 0 127 1 7 1507 432 0 0 0 chr11 120868972 120869020 -974836 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1507 22 0 0 0 chr11 120869146 120869168 -974688 + AT_rich Low_complexity Low_complexity 1 22 0 7 1507 415 306 8 24 chr11 120869223 120869347 -974509 - ID_B1 SINE B4 -11 213 92 7 1507 234 281 62 0 chr11 120869668 120869732 -974124 + MER53 DNA hAT 1 68 -125 7 1507 650 202 65 0 chr11 120870578 120870702 -973154 + B1_Mur1 SINE Alu 12 143 -6 7 1507 244 289 9 19 chr11 120870716 120870822 -973034 - L1ME2z LINE L1 -307 6137 6033 7 1507 188 35 35 0 chr11 120871025 120871054 -972802 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 7 1507 944 113 42 14 chr11 120871054 120871198 -972658 - B1_Mur4 SINE Alu -1 149 2 7 1507 1003 200 53 10 chr11 120871201 120871408 -972448 - B3 SINE B2 0 216 1 7 1507 675 190 48 27 chr11 120871504 120871650 -972206 - B1_Mur1 SINE Alu 0 149 1 7 1507 1337 209 128 111 chr11 120871672 120872211 -971645 - RMER4B LTR ERVK -14 571 24 7 1507 257 0 30 0 chr11 120872252 120872285 -971571 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 7 1507 5031 148 32 12 chr11 120872285 120873185 -970671 - Lx4B LINE L1 -21 7037 6120 7 1507 621 274 142 5 chr11 120873185 120873390 -970466 - MTD LTR MaLR -186 233 1 7 1507 532 241 43 14 chr11 120873483 120873622 -970234 - RMER15 LTR ERVL -65 510 368 7 1507 315 231 0 44 chr11 120873671 120873807 -970049 + (CATA)n Simple_repeat Simple_repeat 1 130 0 7 1507 816 281 58 13 chr11 120874007 120874230 -969626 + B4A SINE B4 2 234 -58 7 1507 406 270 30 0 chr11 120874230 120874330 -969526 + RSINE1 SINE B4 3 105 -60 7 1507 203 158 0 0 chr11 120874737 120874775 -969081 + GA-rich Low_complexity Low_complexity 1 38 0 7 1507 348 260 31 0 chr11 120875364 120875460 -968396 + ID_B1 SINE B4 105 203 -21 7 1507 606 255 7 46 chr11 120875474 120875626 -968230 + ID_B1 SINE B4 78 223 -1 7 1507 428 289 16 0 chr11 120876552 120876673 -967183 + Looper DNA PiggyBac 838 960 -598 7 1507 311 331 57 28 chr11 120876668 120876845 -967011 + Looper DNA PiggyBac 1374 1555 -3 7 1507 358 300 31 62 chr11 120877093 120877109 -966747 - B1F1 SINE Alu -24 125 48 7 1507 510 267 0 0 chr11 120877109 120877214 -966642 - ID_B1 SINE B4 -30 194 90 7 1507 200 163 47 0 chr11 120877865 120877908 -965948 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 7 1507 186 217 0 0 chr11 120877913 120877982 -965874 + GA-rich Low_complexity Low_complexity 2 70 0 7 1507 283 143 49 32 chr11 120878013 120878136 -965720 + (CAGAGA)n Simple_repeat Simple_repeat 6 130 0 7 1507 342 237 60 148 chr11 120878220 120878403 -965453 + HAL1-3A_ME LINE L1 1968 2134 -724 7 1507 441 27 54 14 chr11 120878539 120878613 -965243 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 7 1507 188 146 49 0 chr11 120879532 120879573 -964283 + G-rich Low_complexity Low_complexity 4 46 0 7 1507 1031 248 19 5 chr11 120882080 120882287 -961569 - B3 SINE B2 -6 210 1 7 1507 401 303 0 0 chr11 120882548 120882637 -961219 - B3A SINE B2 -94 104 16 7 1507 209 309 15 0 chr11 120883194 120883262 -960594 + CT-rich Low_complexity Low_complexity 5 73 0 7 1507 271 333 0 20 chr11 120884020 120884121 -959735 + B1_Mus1 SINE Alu 27 125 -23 7 1507 1077 167 17 0 chr11 120884115 120884289 -959567 + B3 SINE B2 8 184 -32 7 1507 459 235 48 48 chr11 120884304 120884429 -959427 + ID_B1 SINE B4 79 203 -21 7 1507 359 159 16 16 chr11 120884510 120884574 -959282 - B3 SINE B2 -126 90 27 7 1507 1187 48 0 26 chr11 120884697 120884848 -959008 - B1_Mus2 SINE Alu 0 147 1 7 1507 784 179 208 0 chr11 120885115 120885288 -958568 - B3 SINE B2 -6 210 2 7 1507 246 305 0 79 chr11 120885672 120885761 -958095 + Arthur1 DNA Tip100 3610 3691 -256 7 1507 273 296 49 105 chr11 120885736 120885770 -958086 + ID_B1 SINE B4 57 171 -53 7 1507 479 211 59 42 chr11 120885770 120885889 -957967 + B1_Mur2 SINE Alu 2 122 -27 7 1507 23 33 0 0 chr11 120886073 120886103 -957753 + AT_rich Low_complexity Low_complexity 1 30 0 7 1507 195 42 0 0 chr11 120886129 120886153 -957703 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1507 1059 84 0 0 chr11 120886154 120886285 -957571 - B1_Mus2 SINE Alu -12 135 5 7 1507 1008 61 15 0 chr11 120886412 120886543 -957313 + B1_Mus1 SINE Alu 16 148 0 7 1507 545 282 69 58 chr11 120886551 120886739 -957117 + B3A SINE B2 9 198 0 7 1507 282 256 14 28 chr11 120886728 120886869 -956987 + ORR1B1-int LTR MaLR 616 754 -755 7 1507 932 145 0 0 chr11 120886765 120886903 -956953 + B1_Mur3 SINE Alu 6 143 -6 7 1507 814 303 10 65 chr11 120886940 120887035 -956821 + B4 SINE B4 1 97 -195 7 1507 1032 72 7 48 chr11 120887035 120887181 -956675 + B1_Mur4 SINE Alu 1 140 -10 7 1507 814 303 10 65 chr11 120887181 120887392 -956464 + B4 SINE B4 98 290 -2 7 1507 589 281 30 0 chr11 120887435 120887570 -956286 - ID_B1 SINE B4 -3 221 83 7 1507 257 229 0 0 chr11 120887823 120887871 -955985 + B4 SINE B4 86 133 -159 7 1507 695 235 13 51 chr11 120887940 120888097 -955759 - RSINE1 SINE B4 0 165 15 7 1507 270 0 0 0 chr11 120888098 120888128 -955728 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 7 1507 295 164 31 62 chr11 120888128 120888182 -955674 - ID4_ SINE ID -27 56 2 7 1507 387 279 89 8 chr11 120888183 120888306 -955550 - PB1D10 SINE Alu -16 133 1 7 1507 247 275 35 60 chr11 120889036 120889052 -954804 - YREP_Mm Unknown Unknown -1485 327 269 7 1507 416 153 45 34 chr11 120889052 120889140 -954716 + PB1D10 SINE Alu 1 89 -28 7 1507 247 275 35 60 chr11 120889140 120889152 -954704 - YREP_Mm Unknown Unknown -1485 268 215 7 1507 1198 106 10 41 chr11 120889295 120889492 -954364 - B2_Mm2 SINE B2 -2 193 3 7 1507 1445 40 40 0 chr11 120889849 120890022 -953834 + B2_Mm2 SINE B2 2 181 -14 7 1507 1477 203 158 40 chr11 120890064 120890781 -953075 - RMER13A LTR ERVK 0 860 1 7 1507 789 90 0 0 chr11 120890920 120891031 -952825 + (TTC)n Simple_repeat Simple_repeat 3 113 0 7 1507 234 0 0 0 chr11 120891031 120891056 -952800 + (TTA)n Simple_repeat Simple_repeat 1 26 0 7 1507 1343 290 74 53 chr11 120891085 120891518 -952338 - L1M2 LINE L1 -418 5462 5048 7 1507 661 234 14 7 chr11 120891518 120891656 -952200 + B1_Mur1 SINE Alu 1 139 -10 7 1507 243 0 0 0 chr11 120891656 120891683 -952173 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1507 1343 272 80 39 chr11 120891683 120892140 -951716 - L1M2 LINE L1 -1055 5088 4609 7 1507 523 244 24 0 chr11 120892172 120892299 -951557 + U3 snRNA snRNA 86 215 -2 7 1507 386 235 171 29 chr11 120892370 120892545 -951311 - B3 SINE B2 -12 204 5 7 1507 210 37 0 0 chr11 120892807 120892834 -951022 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 7 1507 281 48 48 0 chr11 120892916 120892958 -950898 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 7 1507 900 111 0 0 chr11 120892964 120893090 -950766 - B1_Mus1 SINE Alu 0 148 23 7 1507 392 206 18 97 chr11 120893009 120893122 -950734 - MT2B LTR ERVL -344 257 154 7 1507 510 332 39 5 chr11 120893307 120893513 -950343 - ID_B1 SINE B4 -8 216 4 7 1507 758 122 8 34 chr11 120893540 120893659 -950197 - B1_Mur4 SINE Alu 0 150 35 7 1507 749 198 136 28 chr11 120893669 120893846 -950010 - B3 SINE B2 -1 215 20 7 1507 249 139 0 0 chr11 120893983 120894026 -949830 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1507 1140 43 50 0 chr11 120894026 120894166 -949690 - B1_Mm SINE Alu 0 147 1 8 1507 527 58 0 0 chr11 120895903 120895989 -947867 - L1Md_F3 LINE L1 0 6584 6499 8 1507 2062 85 152 25 chr11 120896067 120896430 -947426 - RLTR9E LTR ERVK 0 409 1 8 1507 291 286 191 19 chr11 120898645 120898802 -945054 + B3 SINE B2 20 203 -13 8 1507 249 351 18 9 chr11 120898743 120898855 -945001 - RMER12 LTR ERVK -464 858 746 8 1507 941 141 21 0 chr11 120902225 120902367 -941489 - B1_Mus1 SINE Alu -3 145 1 8 1507 277 262 0 16 chr11 120902846 120902908 -940948 + C-rich Low_complexity Low_complexity 2 62 0 8 1507 461 222 156 9 chr11 120902908 120903017 -940839 - B1_Mur1 SINE Alu -16 133 9 8 1507 1186 61 7 0 chr11 120903494 120903641 -940215 - B1_Mus1 SINE Alu 0 148 1 8 1507 872 141 8 0 chr11 120903641 120903769 -940087 + B1_Mus1 SINE Alu 13 141 -7 8 1507 273 89 0 0 chr11 120903772 120903817 -940039 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 8 1507 212 298 96 32 chr11 120903871 120903996 -939860 - L2 LINE L2 -3219 200 68 8 1507 372 250 12 0 chr11 120904048 120904132 -939724 + RMER15-int LTR ERVL 245 329 -4670 8 1507 651 283 70 118 chr11 120904132 120904404 -939452 + MTE2b LTR MaLR 40 298 -81 8 1507 1831 161 87 22 chr11 120905158 120905513 -938343 - MTC LTR MaLR 0 421 44 8 1507 1848 201 70 23 chr11 120905868 120906105 -937751 - MTD LTR MaLR -14 405 148 8 1507 1361 149 119 99 chr11 120906105 120906424 -937432 - RMER17C LTR ERVK 0 410 82 8 1507 1096 100 0 0 chr11 120906424 120906564 -937292 - B1_Mus1 SINE Alu -8 140 1 8 1507 1361 149 119 99 chr11 120906564 120906646 -937210 - RMER17C LTR ERVK -329 81 1 8 1507 1848 201 70 23 chr11 120906646 120906795 -937061 - MTD LTR MaLR -272 147 1 8 1507 735 256 219 4 chr11 120906978 120907256 -936600 + ORR1D1 LTR MaLR 33 370 -4 8 1507 311 177 83 111 chr11 120907256 120907364 -936492 + RMER10A LTR ERVL 1 105 -337 8 1507 201 210 32 16 chr11 120907449 120907512 -936344 + CT-rich Low_complexity Low_complexity 2 65 0 8 1507 244 286 42 76 chr11 120907903 120908047 -935809 + RLTR1 LTR ERV1 436 574 -50 8 1507 330 250 28 0 chr11 120908212 120908284 -935572 + B3A SINE B2 2 75 -123 8 1507 1044 226 9 9 chr11 120908282 120908492 -935364 - MTD LTR MaLR -209 210 1 8 1507 252 0 0 0 chr11 120909158 120909186 -934670 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1507 690 233 84 17 chr11 120909377 120909556 -934300 + B3A SINE B2 1 191 -7 8 1507 740 238 0 7 chr11 120909568 120909712 -934144 + B1_Mur1 SINE Alu 7 149 0 8 1507 452 209 14 54 chr11 120910144 120910291 -933565 + RLTR19-int LTR ERVK 1020 1160 -4977 8 1507 227 179 138 35 chr11 120910300 120910358 -933498 + MTC-int LTR MaLR 475 538 -720 8 1507 631 275 47 115 chr11 120910355 120910491 -933365 + MTC-int LTR MaLR 910 1044 -214 8 1507 809 167 65 7 chr11 120910491 120910630 -933226 - B1_Mur2 SINE Alu -2 147 1 8 1507 631 275 47 115 chr11 120910630 120910814 -933042 + MTC-int LTR MaLR 1045 1208 -50 8 1507 4755 226 115 105 chr11 120911014 120912217 -931639 + RLTR19-int LTR ERVK 2174 3453 -2684 8 1507 961 82 6 165 chr11 120912217 120912393 -931463 - B1_Mus1 SINE Alu 0 148 1 8 1507 4755 226 115 105 chr11 120912393 120912750 -931106 + RLTR19-int LTR ERVK 3454 3861 -2276 8 1507 1443 93 0 15 chr11 120912750 120912947 -930909 - B2_Mm2 SINE B2 -1 194 1 8 1507 4755 226 115 105 chr11 120912947 120913572 -930284 + RLTR19-int LTR ERVK 3862 4380 -1757 8 1507 750 246 72 0 chr11 120914486 120914681 -929175 - B3 SINE B2 -6 210 2 8 1507 245 324 0 0 chr11 120915682 120915750 -928106 + GA-rich Low_complexity Low_complexity 1 68 0 8 1507 228 225 0 0 chr11 120916306 120916346 -927510 + (ATGGTG)n Simple_repeat Simple_repeat 6 45 0 8 1507 2196 186 58 5 chr11 120918203 120918620 -925236 - MT2A LTR ERVL -87 446 8 8 1507 383 310 13 70 chr11 120921272 120921289 -922567 + ID_B1 SINE B4 78 223 0 8 1507 672 254 22 0 chr11 120921289 120921427 -922429 + B1_Mur1 SINE Alu 9 149 0 8 1507 724 134 34 0 chr11 120921705 120921824 -922032 - B1_Mur4 SINE Alu -1 149 27 8 1507 997 93 0 96 chr11 120921869 120921979 -921877 + B2_Mm2 SINE B2 2 110 -85 8 1507 1627 36 0 5 chr11 120921979 120922172 -921684 - B2_Mm1a SINE B2 0 193 2 8 1507 997 93 0 96 chr11 120922172 120922228 -921628 + B2_Mm2 SINE B2 111 152 -43 8 1507 831 255 89 36 chr11 120922229 120922340 -921516 - B3 SINE B2 0 216 113 8 1507 516 32 0 0 chr11 120922340 120922402 -921454 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 8 1507 831 244 96 0 chr11 120922402 120922510 -921346 - B3 SINE B2 -93 123 2 8 1507 327 162 311 0 chr11 120922520 120922594 -921262 - BC1_Mm scRNA scRNA -55 97 1 8 1507 368 277 33 99 chr11 120922849 120923001 -920855 + RSINE1 SINE B4 22 163 -2 8 1507 278 211 0 0 chr11 120923051 120923103 -920753 + PB1D9 SINE Alu 3 54 -66 8 1507 343 183 24 0 chr11 120925967 120926049 -917807 + CT-rich Low_complexity Low_complexity 1 84 0 8 1507 783 275 111 51 chr11 120926078 120926312 -917544 - B4 SINE B4 -43 249 2 8 1507 454 244 157 0 chr11 120927616 120927731 -916125 + MTEa LTR MaLR 22 154 -225 8 1507 546 256 11 62 chr11 120927724 120927753 -916103 + ID_B1 SINE B4 55 222 0 8 1507 942 149 7 0 chr11 120927753 120927901 -915955 + B1_Mur3 SINE Alu 1 149 0 8 1507 521 250 67 40 chr11 120927905 120928084 -915772 + MTEa LTR MaLR 169 334 -45 8 1507 370 329 87 104 chr11 120928374 120928662 -915194 + B4 SINE B4 10 292 0 8 1507 34 0 0 0 chr11 120928678 120928712 -915144 + AT_rich Low_complexity Low_complexity 1 34 0 8 1507 3244 3 0 78 chr11 120931226 120931624 -912232 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1507 25695 21 34 0 chr11 120931624 120934678 -909178 + IAPEz-int LTR ERVK 8 3165 -3316 8 1507 9578 25 2 4 chr11 120934667 120935807 -908049 + IAPEz-int LTR ERVK 5345 6481 0 8 1507 3089 16 0 111 chr11 120935807 120936220 -907636 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1507 378 0 0 0 chr11 120937325 120937367 -906489 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 8 1507 383 316 20 0 chr11 120937367 120937465 -906391 - PB1D10 SINE Alu -14 103 4 8 1507 260 223 94 7 chr11 120937592 120937690 -906166 - B1F1 SINE Alu 0 149 1 8 1507 1526 212 186 53 chr11 120938142 120938750 -905106 + RMER6C LTR ERVK 2 690 0 8 1507 602 292 0 21 chr11 120938752 120938892 -904964 + ID_B1 SINE B4 88 224 0 8 1507 265 295 137 0 chr11 120938904 120938999 -904857 - PB1D10 SINE Alu -1 116 9 8 1507 504 269 14 29 chr11 120939485 120939623 -904233 - RLTR15 LTR ERVK -220 139 4 8 1507 258 324 53 44 chr11 120939670 120939783 -904073 + PB1D10 SINE Alu 2 115 -2 8 1507 377 231 61 76 chr11 120939727 120939858 -903998 + B4 SINE B4 164 292 0 8 1507 270 0 0 0 chr11 120941578 120941608 -902248 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1507 651 246 0 4 chr11 120941684 120941928 -901928 + (TG)n Simple_repeat Simple_repeat 1 242 0 8 1507 432 0 0 0 chr11 120945052 120945100 -898756 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1507 436 217 139 16 chr11 120945100 120945213 -898643 - ID_B1 SINE B4 -11 213 84 8 1507 261 0 0 0 chr11 120945222 120945251 -898605 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 1507 716 143 0 74 chr11 120945251 120945372 -898484 - B1_Mur1 SINE Alu -12 137 26 8 1507 689 255 118 14 chr11 120945444 120945652 -898204 + B4A SINE B4 1 230 -62 8 1507 643 314 38 41 chr11 120945652 120945944 -897912 + B4A SINE B4 1 291 -1 8 1507 212 0 36 0 chr11 120946046 120946074 -897782 + (CACCC)n Simple_repeat Simple_repeat 5 33 0 8 1507 474 18 0 0 chr11 120946096 120946151 -897705 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 1507 426 20 0 0 chr11 120946255 120946306 -897550 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1507 366 248 52 52 chr11 120946308 120946423 -897433 - RSINE1 SINE B4 -41 124 10 8 1507 442 272 0 11 chr11 120946878 120946971 -896885 + B1F SINE Alu 5 96 -53 8 1507 1084 163 47 28 chr11 120947165 120947380 -896476 - RMER4B LTR ERVK -366 219 1 8 1507 218 200 22 0 chr11 120947581 120947626 -896230 - B2_Mm2 SINE B2 -149 46 1 8 1507 553 246 17 0 chr11 120948212 120948330 -895526 - PB1D9 SINE Alu 0 120 1 8 1507 1158 236 114 37 chr11 120948333 120948685 -895171 - MTE2a LTR MaLR 0 379 1 8 1507 229 284 0 56 chr11 120949112 120949183 -894673 + B3 SINE B2 47 113 -103 8 1507 255 200 67 0 chr11 120949156 120949216 -894640 + B4 SINE B4 169 232 -60 8 1507 1257 41 0 0 chr11 120949637 120949784 -894072 + B1_Mus1 SINE Alu 2 148 0 8 1507 201 108 0 0 chr11 120949789 120949826 -894030 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 8 1507 548 265 73 0 chr11 120949844 120949995 -893861 + RSINE1 SINE B4 3 164 -1 8 1507 617 262 0 102 chr11 120950018 120950175 -893681 - B1_Mur1 SINE Alu -7 142 2 8 1507 471 233 33 16 chr11 120950200 120950316 -893540 + PB1D10 SINE Alu 2 117 0 8 1507 642 82 0 0 chr11 120950993 120951091 -892765 + (TG)n Simple_repeat Simple_repeat 2 99 0 8 1507 343 194 16 0 chr11 120951102 120951164 -892692 - ID4 SINE ID -19 64 2 8 1507 457 217 104 0 chr11 120951448 120951554 -892302 - ID_B1 SINE B4 -4 220 104 8 1507 272 260 46 74 chr11 120951507 120951615 -892241 + YREP_Mm Unknown Unknown 250 354 -1458 8 1507 306 301 64 57 chr11 120951789 120951930 -891926 + B3 SINE B2 47 188 -28 8 1507 373 265 48 0 chr11 120951960 120952043 -891813 + ID_B1 SINE B4 82 168 -56 8 1507 337 276 75 19 chr11 120952043 120952058 -891798 + PB1D10 SINE Alu 1 106 -11 8 1507 351 0 0 0 chr11 120952058 120952097 -891759 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1507 582 15 0 0 chr11 120952708 120952775 -891081 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 8 1507 378 61 0 0 chr11 120952775 120952824 -891032 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1507 3061 50 0 13 chr11 120952869 120953256 -890600 + L1Md_F2 LINE L1 6200 6581 -1 8 1507 831 53 9 17 chr11 120953370 120953486 -890370 + B1_Mus2 SINE Alu 33 147 0 8 1507 362 287 47 47 chr11 120953495 120953645 -890211 + L1M5 LINE L1 3072 3221 -2922 8 1507 225 239 113 52 chr11 120954142 120954257 -889599 - B1_Mm SINE Alu -5 142 21 9 1507 687 240 63 17 chr11 120954162 120954336 -889520 - ID_B1 SINE B4 -31 193 12 9 1507 547 163 85 47 chr11 120954594 120954723 -889133 - B1_Mur2 SINE Alu -13 136 3 9 1507 1162 49 14 14 chr11 120954832 120954977 -888879 - B1_Mur4 SINE Alu -1 149 5 9 1507 310 282 9 55 chr11 120955168 120955277 -888579 + RMER10B LTR ERVL 283 386 -12 9 1507 873 289 58 7 chr11 120955299 120955592 -888264 + Lx7 LINE L1 5600 5907 -1789 9 1507 1178 56 7 0 chr11 120955843 120955986 -887870 + B1_Mus1 SINE Alu 5 148 0 9 1507 240 35 0 0 chr11 120956782 120956811 -887045 + (CTA)n Simple_repeat Simple_repeat 1 29 0 9 1507 712 24 0 23 chr11 120957023 120957101 -886755 + L1Md_Gf LINE L1 48 125 -6397 9 1507 2208 0 0 0 chr11 120957101 120957342 -886514 + L1Md_T LINE L1 6342 6582 0 9 1507 258 125 0 0 chr11 120957349 120957397 -886459 + (A)n Simple_repeat Simple_repeat 1 48 0 9 1507 639 139 10 29 chr11 120957429 120957533 -886323 - B1_Mur3 SINE Alu -6 143 42 9 1507 284 0 0 160 chr11 120957536 120957680 -886176 + (CTCTG)n Simple_repeat Simple_repeat 5 125 0 9 1507 291 186 0 33 chr11 120957681 120957742 -886114 - PB1D9 SINE Alu -61 59 1 9 1507 389 193 6 8 chr11 120959576 120959661 -884195 + B1F SINE Alu 34 117 0 9 1507 348 229 294 32 chr11 120959705 120959831 -884025 + RSINE1 SINE B4 7 165 0 9 1507 771 276 0 30 chr11 120959864 120960062 -883794 - B3A SINE B2 -6 192 1 9 1507 306 0 0 0 chr11 120960090 120960124 -883732 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 9 1507 1283 47 0 0 chr11 120960311 120960459 -883397 + B1_Mus1 SINE Alu 1 148 0 9 1507 273 39 0 56 chr11 120960462 120960516 -883340 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 9 1507 1378 195 74 25 chr11 120961436 120961762 -882094 + RMER10A LTR ERVL 1 342 -100 9 1507 363 333 34 17 chr11 120961794 120961856 -882000 + B4A SINE B4 142 204 -88 9 1507 190 0 32 32 chr11 120961856 120961887 -881969 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 9 1507 363 333 34 17 chr11 120961887 120961943 -881913 + B4A SINE B4 205 262 -30 9 1507 333 0 0 0 chr11 120961943 120961980 -881876 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1507 534 258 24 0 chr11 120963072 120963196 -880660 - B1F SINE Alu -21 128 2 9 1507 364 164 131 0 chr11 120963298 120963359 -880497 + ID4_ SINE ID 4 72 -11 9 1507 3460 270 67 27 chr11 120963386 120963505 -880351 + Lx8 LINE L1 6277 6384 -1089 9 1507 1001 88 0 58 chr11 120963505 120963661 -880195 - B1_Mus1 SINE Alu 0 148 2 9 1507 3460 270 67 27 chr11 120963661 120964534 -879322 + Lx8 LINE L1 6385 7308 -165 9 1507 30 69 0 0 chr11 120964626 120964684 -879172 + AT_rich Low_complexity Low_complexity 1 58 0 9 1507 308 260 330 50 chr11 120964698 120964877 -878979 - MTE2b LTR MaLR -71 308 80 9 1507 846 255 30 10 chr11 120964896 120965098 -878758 + B3 SINE B2 2 207 -9 9 1507 246 32 0 0 chr11 120965155 120965186 -878670 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1507 1037 88 0 0 chr11 120965186 120965322 -878534 - B1_Mus1 SINE Alu -11 137 2 9 1507 264 149 0 0 chr11 120965412 120965459 -878397 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1507 399 70 225 0 chr11 120965459 120965530 -878326 - B1_Mus1 SINE Alu -39 109 23 9 1507 729 175 65 14 chr11 120965902 120966041 -877815 + B1_Mur1 SINE Alu 1 146 -3 9 1507 1060 78 21 0 chr11 120966042 120966184 -877672 + B1_Mm SINE Alu 3 147 0 9 1507 261 139 0 0 chr11 120966215 120966258 -877598 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1507 3360 45 0 12 chr11 120968442 120968847 -875009 - MTB LTR MaLR 0 400 1 9 1507 488 229 64 0 chr11 120969284 120969393 -874463 - B1F2 SINE Alu -10 139 24 9 1507 447 106 0 0 chr11 120971046 120971112 -872744 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 9 1507 425 177 196 10 chr11 120971179 120971276 -872580 - B1_Mur1 SINE Alu -32 117 3 9 1507 285 131 0 0 chr11 120971305 120971366 -872490 + (A)n Simple_repeat Simple_repeat 1 61 0 9 1507 561 229 9 61 chr11 120971678 120971706 -872150 + ID_B1 SINE B4 79 215 -77 9 1507 1018 39 0 15 chr11 120971706 120971824 -872032 + B1_Mus2 SINE Alu 19 136 -11 9 1507 681 76 0 0 chr11 120971824 120971916 -871940 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 9 1507 1018 39 0 15 chr11 120971916 120971927 -871929 + B1_Mus2 SINE Alu 137 146 -1 9 1507 561 252 42 97 chr11 120971927 120971967 -871889 + ID_B1 SINE B4 213 268 -24 9 1507 380 125 0 0 chr11 120971951 120972007 -871849 + ORR1B2 LTR MaLR 312 367 0 9 1507 1301 101 16 21 chr11 120972120 120972313 -871543 + B2_Mm2 SINE B2 2 193 -2 9 1507 192 111 0 0 chr11 120972850 120972886 -870970 + (G)n Simple_repeat Simple_repeat 1 36 0 9 1507 183 214 0 23 chr11 120973128 120973171 -870685 - L3b LINE CR1 -262 220 179 9 1507 1149 104 113 56 chr11 120974084 120974297 -869559 + URR1A DNA MER1_type 1 225 -1 9 1507 765 257 75 32 chr11 120974424 120974705 -869151 + RLTR15 LTR ERVK 1 293 -66 9 1507 2375 107 8 8 chr11 120974861 120975220 -868636 - RLTR15 LTR ERVK 0 359 1 9 1507 348 248 19 65 chr11 120975229 120975337 -868519 + PB1D7 SINE Alu 2 104 -16 9 1507 632 223 0 0 chr11 120975337 120975449 -868407 + B3A SINE B2 2 113 -85 9 1507 1427 258 64 11 chr11 120975543 120975897 -867959 - ORR1D2 LTR MaLR 0 379 1 9 1507 382 154 0 49 chr11 120975897 120975974 -867882 + B3A SINE B2 40 112 -86 9 1507 405 0 0 0 chr11 120975977 120976022 -867834 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1507 326 322 23 0 chr11 120976317 120976404 -867452 + B1F SINE Alu 8 96 -53 9 1507 1097 99 41 71 chr11 120976402 120976477 -867379 + B2_Mm2 SINE B2 6 86 -109 9 1507 3444 33 2 10 chr11 120976477 120976876 -866980 - MTA_Mm LTR MaLR 0 396 1 9 1507 1097 99 41 71 chr11 120976876 120976996 -866860 + B2_Mm2 SINE B2 87 195 0 9 1507 354 250 188 0 chr11 120977164 120977276 -866580 - ID_B1 SINE B4 0 224 92 9 1508 265 321 71 29 chr11 120980217 120980387 -863469 - L1MC LINE L1 -538 5806 5630 9 1508 322 121 86 0 chr11 120980690 120980748 -863108 + B1_Mur4 SINE Alu 88 150 0 9 1508 388 56 37 0 chr11 120980794 120980848 -863008 - ORR1C2 LTR MaLR -320 64 9 9 1508 357 259 8 79 chr11 120980865 120980991 -862865 + B3A SINE B2 82 198 0 9 1508 3392 28 2 17 chr11 120981018 120981420 -862436 + MTA_Mm LTR MaLR 1 396 0 9 1508 751 188 188 0 chr11 120981420 120981601 -862255 + B3 SINE B2 2 216 0 9 1508 21 0 0 0 chr11 120981601 120981622 -862234 + AT_rich Low_complexity Low_complexity 1 21 0 9 1508 1036 117 68 0 chr11 120981700 120981863 -861993 + B2_Mm2 SINE B2 1 174 -21 9 1508 285 267 76 22 chr11 120981905 120981997 -861859 - RMER5 LTR ERV1 -30 504 408 9 1508 610 147 0 10 chr11 120982113 120982216 -861640 - B1F2 SINE Alu -7 142 41 9 1508 645 211 99 85 chr11 120982230 120982272 -861584 - B3 SINE B2 0 216 190 9 1508 972 118 0 0 chr11 120982272 120982408 -861448 - B1_Mus1 SINE Alu -12 136 1 9 1508 1019 112 32 8 chr11 120982408 120982577 -861279 - B2_Mm2 SINE B2 -27 189 2 9 1508 926 251 24 10 chr11 120982602 120982807 -861049 - MTE2b LTR MaLR 0 379 172 9 1508 562 327 20 7 chr11 120983176 120983327 -860529 - RSINE1 SINE B4 0 165 13 9 1508 351 0 0 0 chr11 120983345 120983384 -860472 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1508 431 258 89 22 chr11 120983404 120983539 -860317 - MTE2b LTR MaLR -235 144 1 9 1508 406 311 25 8 chr11 120983539 120983656 -860200 - ID_B1 SINE B4 -18 206 88 9 1508 337 287 80 14 chr11 120983730 120983868 -859988 - MLT1B LTR MaLR 0 390 219 9 1508 414 196 120 0 chr11 120984094 120984186 -859670 - PB1 SINE Alu -2 125 23 9 1508 3567 23 2 0 chr11 120984358 120984753 -859103 + MTA_Mm LTR MaLR 1 396 0 9 1508 290 243 0 14 chr11 120984985 120985056 -858800 + B4A SINE B4 2 71 -221 9 1508 890 214 28 0 chr11 120985056 120985234 -858622 + MTC LTR MaLR 1 183 -238 9 1508 343 250 49 24 chr11 120985280 120985362 -858494 - RMER10B LTR ERVL -23 375 292 9 1508 985 119 0 181 chr11 120985360 120985586 -858270 - ORR1A4 LTR MaLR -144 185 1 9 1508 1392 89 0 5 chr11 120986554 120986746 -857110 + B2_Mm2 SINE B2 2 192 -3 9 1508 1282 20 0 0 chr11 120986754 120986901 -856955 + B1_Mus2 SINE Alu 1 147 0 9 1508 351 0 0 0 chr11 120987199 120987238 -856618 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1508 621 246 100 25 chr11 120987788 120987988 -855868 + B3 SINE B2 1 215 -1 9 1508 691 169 0 8 chr11 120988101 120988220 -855636 + PB1D9 SINE Alu 2 119 -1 9 1508 222 171 0 0 chr11 120988254 120988295 -855561 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 9 1508 739 268 36 5 chr11 120988318 120988513 -855343 + B3 SINE B2 13 213 -3 9 1508 873 157 8 0 chr11 120988523 120988657 -855199 - B1_Mur1 SINE Alu -10 139 5 9 1508 369 300 0 9 chr11 120989372 120989483 -854373 + (TCCA)n Simple_repeat Simple_repeat 4 113 0 9 1508 256 227 23 0 chr11 120989494 120989582 -854274 + (CCCA)n Simple_repeat Simple_repeat 3 92 0 9 1508 833 197 15 4 chr11 120989659 120989926 -853930 + (TCCA)n Simple_repeat Simple_repeat 1 270 0 9 1508 28 0 0 0 chr11 120990602 120990630 -853226 + AT_rich Low_complexity Low_complexity 1 28 0 9 1508 906 234 9 32 chr11 120992289 120992505 -851351 + B3 SINE B2 1 211 -5 9 1508 537 261 34 0 chr11 120992519 120992638 -851218 + B3 SINE B2 25 147 -69 9 1508 405 184 11 22 chr11 120992645 120992734 -851122 + RLTR15 LTR ERVK 1 88 -271 1 1508 1154 124 0 17 chr11 120992964 120993144 -850712 - B2_Mm2 SINE B2 -17 178 2 1 1508 1156 97 0 35 chr11 120993715 120993886 -849970 - B2_Mm2 SINE B2 -29 166 2 1 1508 272 254 0 92 chr11 120994139 120994334 -849522 + A-rich Low_complexity Low_complexity 3 179 0 1 1508 11280 246 48 25 chr11 120994341 120997524 -846332 + MYSERV6-int LTR ERVK 332 3589 -5370 1 1508 240 59 0 0 chr11 120997526 120997560 -846296 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 1 1508 966 132 85 11 chr11 120997566 120997742 -846114 - B2_Mm2 SINE B2 -6 189 1 1 1508 338 314 33 67 chr11 120998183 120998453 -845403 - L1M5 LINE L1 -1499 4647 4387 1 1508 286 306 0 0 chr11 120998461 120998533 -845323 - ID2 SINE ID -10 73 2 1 1508 853 236 5 39 chr11 120998537 120998740 -845116 - B3A SINE B2 0 198 3 1 1508 249 269 25 13 chr11 120998740 120998815 -845041 - PB1D10 SINE Alu -41 76 1 1 1508 827 225 196 32 chr11 120999255 120999423 -844433 + RMER13A LTR ERVK 5 203 -313 1 1508 1095 49 35 0 chr11 120999423 120999565 -844291 + B1_Mm SINE Alu 1 147 0 1 1508 829 225 160 33 chr11 120999565 120999851 -844005 + RMER13A LTR ERVK 177 466 -394 1 1508 21 0 0 0 chr11 121001105 121001126 -842730 + AT_rich Low_complexity Low_complexity 1 21 0 1 1508 1271 87 48 16 chr11 121001993 121002181 -841675 + B2_Mm2 SINE B2 1 194 -1 2 1508 654 196 109 27 chr11 121002741 121002888 -840968 - RMER15 LTR ERVL 0 575 417 3 1508 356 243 50 83 chr11 121003085 121003206 -840650 + MLT1A LTR MaLR 255 371 -3 4 1508 1247 48 0 0 chr11 121003249 121003396 -840460 + B1_Mm SINE Alu 1 147 0 5 1508 189 0 0 0 chr11 121003396 121003417 -840439 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1508 278 222 12 100 chr11 121003420 121003500 -840356 + ID4_ SINE ID 1 73 -10 7 1508 342 320 117 0 chr11 121003505 121003633 -840223 + ID_B1 SINE B4 82 224 0 8 1508 1287 97 32 0 chr11 121003667 121003852 -840004 + B2_Mm1t SINE B2 3 193 0 9 1508 209 171 0 0 chr11 121005032 121005067 -838789 + CT-rich Low_complexity Low_complexity 1 35 0 1 1508 361 292 87 58 chr11 121005068 121005206 -838650 - B1_Mur1 SINE Alu -7 142 1 1 1508 438 257 104 148 chr11 121005268 121005565 -838291 - B4A SINE B4 -5 287 4 1 1508 904 264 111 24 chr11 121005681 121006015 -837841 - ORR1D2 LTR MaLR -3 367 5 1 1508 245 317 114 26 chr11 121006223 121006450 -837406 + L1MC2 LINE L1 5701 5947 -397 1 1508 351 78 59 0 chr11 121006778 121006829 -837027 - B1_Mus1 SINE Alu -94 54 1 1 1508 1150 99 47 0 chr11 121006829 121007001 -836855 - B2_Mm2 SINE B2 -15 180 1 1 1508 209 161 0 0 chr11 121008294 121008325 -835531 + polypurine Low_complexity Low_complexity 3 33 0 1 1508 815 261 65 5 chr11 121009630 121009830 -834026 - B3 SINE B2 -4 212 1 1 1508 276 204 0 16 chr11 121010404 121010475 -833381 - PB1 SINE Alu -1 148 81 1 1508 332 94 352 18 chr11 121010795 121010903 -832953 - B2_Mm2 SINE B2 -5 190 47 2 1508 1252 108 11 0 chr11 121010950 121011126 -832730 - B2_Mm1t SINE B2 -14 179 2 2 1508 275 208 19 0 chr11 121011172 121011225 -832631 - RSINE1 SINE B4 -3 162 109 2 1508 243 0 0 0 chr11 121011309 121011336 -832520 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1508 992 93 7 21 chr11 121011345 121011487 -832369 - B1_Mur4 SINE Alu -10 140 1 2 1508 470 278 116 48 chr11 121011520 121011788 -832068 - B4A SINE B4 -4 288 3 2 1508 478 280 37 85 chr11 121011843 121012007 -831849 - RSINE1 SINE B4 -2 163 8 2 1508 563 296 113 29 chr11 121012195 121012649 -831207 + L1MB5 LINE L1 5681 6170 -4 2 1508 323 222 28 0 chr11 121012866 121012938 -830918 + MER53 DNA hAT 119 192 -1 2 1508 4238 161 99 20 chr11 121013142 121013978 -829878 - RMER19B LTR ERVK 0 902 1 2 1508 441 292 9 0 chr11 121013978 121014080 -829776 - U2 snRNA snRNA -85 103 1 3 1508 229 382 0 14 chr11 121014881 121015019 -828837 + (ATG)n Simple_repeat Simple_repeat 3 138 0 3 1508 315 65 0 0 chr11 121018688 121018734 -825122 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 3 1508 805 148 14 29 chr11 121018739 121018878 -824978 - B1_Mur3 SINE Alu -12 137 1 3 1508 373 157 44 15 chr11 121019025 121019161 -824695 + (CA)n Simple_repeat Simple_repeat 2 141 0 3 1508 299 244 28 0 chr11 121019206 121019307 -824549 + L1M5 LINE L1 5504 5608 -725 3 1508 252 184 0 0 chr11 121019558 121019607 -824249 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1508 354 339 36 52 chr11 121019610 121019803 -824053 - L1M5 LINE L1 -785 5455 5266 3 1508 445 211 18 208 chr11 121019906 121019927 -823929 - B2_Mm2 SINE B2 0 195 177 3 1508 962 143 7 20 chr11 121019927 121020077 -823779 + B1_Mur3 SINE Alu 1 148 -1 3 1508 963 211 18 208 chr11 121020077 121020276 -823580 - B3 SINE B2 -1 215 17 3 1508 211 85 21 21 chr11 121020281 121020329 -823527 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 4 1508 1030 252 0 0 chr11 121020343 121020553 -823303 + B3 SINE B2 1 210 -6 4 1508 477 0 0 0 chr11 121020565 121020618 -823238 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1508 198 0 0 0 chr11 121020632 121020654 -823202 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1508 380 115 0 0 chr11 121020687 121020739 -823117 + B1_Mur1 SINE Alu 83 134 -15 4 1508 584 312 0 13 chr11 121020786 121020945 -822911 + RSINE1 SINE B4 3 159 -6 4 1508 1443 44 33 0 chr11 121023854 121024034 -819822 + B2_Mm2 SINE B2 1 186 -9 4 1508 426 20 0 0 chr11 121024069 121024120 -819736 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1508 21 0 0 0 chr11 121024200 121024221 -819635 + AT_rich Low_complexity Low_complexity 1 21 0 4 1508 866 204 0 0 chr11 121024222 121024364 -819492 - B1_Mur1 SINE Alu -7 142 1 4 1508 325 243 0 41 chr11 121024385 121024458 -819398 + ID4 SINE ID 2 71 -12 5 1508 213 39 0 0 chr11 121024462 121024488 -819368 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 5 1508 1165 69 14 0 chr11 121025539 121025683 -818173 + B1_Mus2 SINE Alu 1 146 -1 5 1508 870 159 7 27 chr11 121030073 121030222 -813634 + B1_Mur2 SINE Alu 4 149 0 5 1508 1207 55 7 0 chr11 121030426 121030571 -813285 - B1_Mm SINE Alu 0 147 2 5 1508 240 35 0 0 chr11 121031021 121031050 -812806 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 5 1508 250 145 25 62 chr11 121031112 121031193 -812663 + (TTTG)n Simple_repeat Simple_repeat 1 78 0 5 1508 731 170 42 21 chr11 121031193 121031337 -812519 - B1_Mus1 SINE Alu -1 147 1 5 1508 1306 91 43 5 chr11 121031377 121031565 -812291 - B2_Mm2 SINE B2 0 195 1 5 1508 1351 111 0 5 chr11 121032143 121032334 -811522 + B2_Mm2 SINE B2 2 191 -4 5 1508 1165 133 133 0 chr11 121032491 121032687 -811169 - URR1A DNA MER1_type -4 222 1 6 1508 226 35 0 0 chr11 121034962 121034991 -808865 + RMER17D LTR ERVK 1 29 -860 6 1508 1199 55 7 0 chr11 121035407 121035553 -808303 - B1_Mm SINE Alu 0 147 1 6 1508 405 279 56 77 chr11 121035907 121035920 -807936 + B4 SINE B4 70 112 -180 6 1508 749 203 0 0 chr11 121035920 121036053 -807803 + B1_Mur1 SINE Alu 1 133 -16 6 1508 405 279 56 77 chr11 121036053 121036089 -807767 + B4 SINE B4 113 248 -44 6 1508 875 243 69 5 chr11 121039508 121039711 -804145 + B3 SINE B2 1 216 0 6 1508 332 77 12 82 chr11 121040032 121040117 -803739 + (CTAA)n Simple_repeat Simple_repeat 1 79 0 6 1508 324 325 113 20 chr11 121040861 121041056 -802800 + L1M4b LINE L1 1918 2130 -5204 6 1508 255 298 76 9 chr11 121041056 121041161 -802695 + RLTR25A LTR ERVK 560 671 -432 6 1508 492 241 18 9 chr11 121041100 121041209 -802647 + PB1D9 SINE Alu 11 120 0 6 1508 763 249 32 72 chr11 121041827 121042048 -801808 + ID_B1 SINE B4 8 219 -5 7 1508 778 237 102 0 chr11 121042054 121042240 -801616 + B3 SINE B2 12 216 0 7 1508 274 388 19 0 chr11 121042253 121042356 -801500 + ID_B1 SINE B4 70 174 -50 7 1508 366 295 28 19 chr11 121042273 121042380 -801476 + PB1D10 SINE Alu 10 117 0 7 1508 461 240 9 19 chr11 121042495 121042601 -801255 + PB1D10 SINE Alu 13 117 0 7 1508 252 214 71 0 chr11 121042624 121042694 -801162 + ID4_ SINE ID 2 76 -7 7 1508 239 276 0 75 chr11 121042972 121043160 -800696 + G-rich Low_complexity Low_complexity 3 176 0 7 1508 444 329 161 14 chr11 121043455 121043946 -799910 + L1M4b LINE L1 5428 5990 -1016 6 1508 1156 41 0 52 chr11 121043958 121044113 -799743 + B1_Mus1 SINE Alu 2 148 0 7 1508 180 0 0 0 chr11 121044113 121044133 -799723 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 7 1508 342 190 126 29 chr11 121044193 121044296 -799560 + PB1D10 SINE Alu 4 116 -1 7 1508 432 55 0 0 chr11 121044611 121044666 -799190 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1508 553 262 108 45 chr11 121044924 121045100 -798756 - B3A SINE B2 -2 196 10 8 1508 1190 61 0 13 chr11 121045305 121045454 -798402 + B1_Mus2 SINE Alu 1 147 0 8 1508 1155 109 35 0 chr11 121045478 121045652 -798204 + B2_Mm1t SINE B2 6 185 -8 8 1508 815 245 34 62 chr11 121047198 121047489 -796367 + RLTR15 LTR ERVK 6 288 -71 8 1508 397 255 94 0 chr11 121047695 121047801 -796055 + PB1D10 SINE Alu 1 116 -1 8 1508 378 0 0 0 chr11 121047821 121047863 -795993 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1508 351 0 0 0 chr11 121047863 121047901 -795955 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1508 1493 58 26 0 chr11 121047902 121048091 -795765 + B2_Mm2 SINE B2 2 195 0 8 1508 615 303 75 46 chr11 121048111 121048391 -795465 + B4A SINE B4 5 292 0 8 1508 551 274 121 0 chr11 121048669 121048793 -795063 + RSINE1 SINE B4 2 140 -25 9 1508 405 0 0 0 chr11 121048795 121048840 -795016 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1508 903 213 106 27 chr11 121048891 121049079 -794777 + B3 SINE B2 12 214 -2 9 1508 292 257 238 0 chr11 121049327 121049428 -794428 + B1F1 SINE Alu 24 148 -1 9 1508 258 32 0 0 chr11 121049496 121049527 -794329 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 9 1508 943 164 0 0 chr11 121049556 121049696 -794160 - B1_Mur4 SINE Alu 0 150 11 9 1508 355 261 47 101 chr11 121049562 121049711 -794145 - B4A SINE B4 -71 221 81 9 1508 499 289 58 26 chr11 121050004 121050160 -793696 + RSINE1 SINE B4 3 163 -2 9 1508 192 77 0 0 chr11 121050172 121050198 -793658 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1508 282 352 11 42 chr11 121050317 121050412 -793444 + RSINE1 SINE B4 57 148 -17 9 1508 1185 89 18 0 chr11 121050637 121050792 -793064 + B2_Mm2 SINE B2 1 158 -37 1 1508 183 80 0 0 chr11 121050792 121050817 -793039 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1508 1185 89 18 0 chr11 121050817 121050830 -793026 + B2_Mm2 SINE B2 159 171 -24 1 1508 793 193 74 0 chr11 121050843 121050978 -792878 + B1_Mus1 SINE Alu 3 147 -1 1 1508 338 235 0 66 chr11 121051221 121051312 -792544 - ID_B1 SINE B4 -1 223 139 1 1508 545 183 0 39 chr11 121051312 121051345 -792511 - B1_Mur2 SINE Alu -5 309 75 1 1508 353 275 33 11 chr11 121051541 121051633 -792223 + ID_B1 SINE B4 127 220 -4 1 1508 756 239 15 29 chr11 121051935 121052113 -791743 + B3A SINE B2 1 161 -34 1 1508 480 18 0 0 chr11 121052113 121052170 -791686 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1508 481 276 30 104 chr11 121052170 121052193 -791663 + B2_Mm2 SINE B2 162 186 -9 1 1508 919 157 14 0 chr11 121052196 121052343 -791513 + B1_Mur4 SINE Alu 2 150 0 1 1508 1159 208 0 27 chr11 121052374 121052596 -791260 + B3 SINE B2 1 216 0 1 1508 288 281 12 0 chr11 121052630 121052712 -791144 + ID4_ SINE ID 1 83 0 1 1508 825 185 13 46 chr11 121052737 121052890 -790966 + B1_Mur2 SINE Alu 2 149 0 1 1508 796 239 6 12 chr11 121052948 121053113 -790743 + RSINE1 SINE B4 2 165 0 1 1508 276 231 0 0 chr11 121053247 121053299 -790557 + MIRm SINE MIR 86 137 -139 1 1508 943 157 0 28 chr11 121053322 121053466 -790390 + B1_Mur1 SINE Alu 5 144 -5 1 1508 2236 128 3 23 chr11 121053595 121053938 -789918 + ORR1A1 LTR MaLR 1 336 -10 1 1508 929 263 37 11 chr11 121055403 121055636 -788220 - ID_B1 SINE B4 -42 250 11 1 1508 252 0 0 0 chr11 121056957 121056985 -786871 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1508 194 91 0 29 chr11 121057044 121057078 -786778 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 1 1508 1413 93 5 0 chr11 121057079 121057273 -786583 - B2_Mm2 SINE B2 0 195 1 1 1508 321 279 65 37 chr11 121057559 121057667 -786189 - LTR87 LTR ERVL? -23 601 491 1 1508 270 257 107 34 chr11 121057692 121057841 -786015 + L1MD2 LINE L1 6031 6190 -169 1 1508 604 65 0 0 chr11 121057842 121057919 -785937 - B2_Mm2 SINE B2 -117 78 2 1 1508 280 204 337 11 chr11 121058163 121058252 -785604 - PB1D7 SINE Alu -1 119 2 1 1508 653 208 6 17 chr11 121058410 121058591 -785265 + GA-rich Low_complexity Low_complexity 2 180 0 1 1508 216 0 0 0 chr11 121058905 121058929 -784927 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1508 1218 62 0 0 chr11 121058929 121059075 -784781 - B1_Mus1 SINE Alu -2 146 1 1 1508 266 329 147 84 chr11 121060306 121060605 -783251 - MLT1C LTR MaLR -82 385 68 1 1508 1029 73 44 7 chr11 121061695 121061832 -782024 - B1_Mm SINE Alu -1 146 5 1 1508 388 273 89 13 chr11 121062581 121062699 -781157 - PB1D10 SINE Alu -23 124 7 1 1508 315 0 0 0 chr11 121063110 121063145 -780711 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1508 470 296 40 0 chr11 121063633 121063758 -780098 - RSINE1 SINE B4 -33 132 3 1 1508 693 307 0 11 chr11 121063985 121064163 -779693 - B3A SINE B2 -22 176 1 1 1508 184 301 42 21 chr11 121065185 121065280 -778576 - L2 LINE L2 -927 2492 2396 1 1508 290 284 55 33 chr11 121066661 121066674 -777182 - ID_B1 SINE B4 -130 94 2 1 1508 362 269 51 0 chr11 121066674 121066752 -777104 - ID4 SINE ID 0 83 2 1 1508 373 250 42 0 chr11 121066764 121066860 -776996 - B1F SINE Alu -12 137 46 1 1508 3598 15 2 0 chr11 121066875 121067270 -776586 + MTA_Mm LTR MaLR 1 396 0 1 1508 9255 34 6 1 chr11 121067270 121068363 -775493 + MTA_Mm-int LTR MaLR 1 1098 0 1 1508 3598 15 2 0 chr11 121068363 121068758 -775098 + MTA_Mm LTR MaLR 1 396 0 1 1508 279 133 0 0 chr11 121069267 121069312 -774544 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1508 423 301 11 0 chr11 121069312 121069405 -774451 - B4A SINE B4 -142 150 57 1 1508 475 294 58 12 chr11 121069503 121069675 -774181 + MLT1C LTR MaLR 288 467 0 1 1508 572 233 0 41 chr11 121069700 121069821 -774035 + ID_B1 SINE B4 101 216 -8 1 1508 565 287 32 26 chr11 121069840 121069994 -773862 + RSINE1 SINE B4 5 159 -6 1 1508 259 288 13 52 chr11 121070526 121070603 -773253 + ID4_ SINE ID 4 77 -6 1 1508 1354 87 5 31 chr11 121070671 121070862 -772994 - B2_Mm1a SINE B2 -6 187 2 1 1508 399 229 98 33 chr11 121071020 121071142 -772714 + RSINE1 SINE B4 31 160 -5 1 1508 240 344 10 27 chr11 121071284 121071326 -772530 + B4A SINE B4 45 144 -148 1 1508 306 271 0 0 chr11 121071326 121071385 -772471 + B1_Mur4 SINE Alu 2 60 -90 1 1508 280 264 101 22 chr11 121071566 121071655 -772201 + PB1D7 SINE Alu 22 117 -3 1 1508 248 206 14 68 chr11 121071649 121071722 -772134 + RLTR25B LTR ERVK 428 496 -532 1 1508 441 141 42 3 chr11 121071665 121071761 -772095 + PB1D9 SINE Alu 40 142 -7 1 1508 487 241 124 0 chr11 121071781 121071918 -771938 + RSINE1 SINE B4 12 165 0 1 1508 240 111 0 0 chr11 121073586 121073622 -770234 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1508 511 266 0 34 chr11 121073668 121073785 -770071 + PB1D7 SINE Alu 1 113 -7 1 1508 679 243 20 0 chr11 121073787 121073935 -769921 + B3 SINE B2 52 202 -14 1 1508 188 205 0 67 chr11 121073937 121074026 -769830 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 1 1508 180 0 0 0 chr11 121074051 121074071 -769785 + (TTTTTA)n Simple_repeat Simple_repeat 1 20 0 1 1508 1223 68 0 0 chr11 121074086 121074233 -769623 - B1_Mus1 SINE Alu 0 148 2 1 1508 216 255 0 0 chr11 121074397 121074444 -769412 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1508 628 330 46 18 chr11 121074446 121074730 -769126 - B4A SINE B4 0 292 1 1 1508 1457 49 43 16 chr11 121074806 121074994 -768862 + B2_Mm2 SINE B2 1 193 -2 1 1508 398 290 32 110 chr11 121075041 121075131 -768725 + ID SINE ID 1 78 -146 1 1508 295 264 0 75 chr11 121075131 121075225 -768631 + B1F1 SINE Alu 1 87 -62 1 1508 698 220 70 40 chr11 121075723 121075922 -767934 + B3 SINE B2 2 206 -10 1 1508 980 211 9 40 chr11 121076732 121076954 -766902 - B3 SINE B2 0 216 2 1 1508 211 200 0 0 chr11 121076956 121076996 -766860 + (ATTTG)n Simple_repeat Simple_repeat 5 44 0 1 1508 373 253 13 0 chr11 121077062 121077137 -766719 - PB1D10 SINE Alu -34 83 8 1 1508 241 309 131 0 chr11 121077063 121077147 -766709 - B4 SINE B4 -118 174 80 1 1508 432 325 17 17 chr11 121077626 121077742 -766114 + B1F SINE Alu 1 116 -33 1 1508 357 281 75 45 chr11 121077631 121077765 -766091 + ID_B1 SINE B4 87 224 0 1 1508 239 229 0 0 chr11 121077816 121077864 -765992 + ID_B1 SINE B4 168 215 -9 1 1508 567 120 0 10 chr11 121077891 121077993 -765863 + B3 SINE B2 4 101 -97 1 1508 247 265 20 0 chr11 121079035 121079084 -764772 + B1F1 SINE Alu 5 54 -95 1 1508 1310 14 0 0 chr11 121079084 121079230 -764626 + B1_Mm SINE Alu 2 147 0 1 1508 234 0 0 0 chr11 121079235 121079261 -764595 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1508 328 194 54 27 chr11 121079261 121079335 -764521 + PB1D7 SINE Alu 42 117 -3 1 1508 520 235 34 145 chr11 121081383 121081562 -762294 + B4 SINE B4 63 221 -71 1 1508 1048 77 0 27 chr11 121081420 121081567 -762289 + B1_Mus1 SINE Alu 6 148 0 1 1508 302 152 0 17 chr11 121081571 121081631 -762225 + GA-rich Low_complexity Low_complexity 2 60 0 1 1508 188 327 37 65 chr11 121082331 121082439 -761417 - L2 LINE L2 -3284 135 31 1 1508 192 204 41 0 chr11 121083149 121083198 -760658 + MIRb SINE MIR 37 87 -181 1 1508 236 232 133 31 chr11 121084500 121084598 -759258 - PB1D10 SINE Alu -6 111 4 1 1508 222 289 0 37 chr11 121087465 121087519 -756337 + ID4_ SINE ID 32 83 0 1 1508 237 229 123 2 chr11 121087846 121087918 -755938 + PB1 SINE Alu 24 108 -19 1 1508 693 248 19 72 chr11 121088769 121088978 -754878 + B3A SINE B2 1 198 0 1 1508 234 115 138 62 chr11 121089450 121089515 -754341 + BC1_Mm scRNA scRNA 14 83 -69 1 1508 641 192 0 8 chr11 121090861 121090982 -752874 - PB1D9 SINE Alu 0 120 1 1 1508 240 122 0 0 chr11 121091349 121091390 -752466 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 1 1508 430 228 92 87 chr11 121091392 121091565 -752291 - RMER10A LTR ERVL -268 174 1 1 1508 1266 112 0 11 chr11 121091827 121092008 -751848 - B2_Mm2 SINE B2 -15 180 2 1 1508 346 276 56 33 chr11 121092060 121092150 -751706 - PB1D9 SINE Alu -28 92 1 1 1508 247 239 0 0 chr11 121092165 121092211 -751645 + polypyrimidine Low_complexity Low_complexity 1 46 0 1 1508 623 164 82 0 chr11 121092212 121092322 -751534 - B1_Mur4 SINE Alu -2 148 30 1 1508 462 103 77 0 chr11 121092655 121092733 -751123 - RLTR14 LTR ERV1 -298 84 1 1 1508 623 205 18 0 chr11 121092733 121092834 -751022 - B1_Mus2 SINE Alu -44 103 1 1 1508 681 153 96 14 chr11 121092965 121093111 -750745 + RMER21B LTR ERV1 254 411 -431 1 1508 180 0 0 0 chr11 121093177 121093197 -750659 + (AGCTG)n Simple_repeat Simple_repeat 5 24 0 1 1508 358 266 185 20 chr11 121094152 121094298 -749558 + RMER21B LTR ERV1 398 567 -275 1 1508 714 200 39 12 chr11 121094769 121094938 -748918 - B3 SINE B2 -26 167 1 1 1508 1940 159 110 42 chr11 121094969 121095377 -748479 + RMER15 LTR ERVL 139 574 -1 1 1508 503 243 80 7 chr11 121095500 121095637 -748219 - B1_Mur2 SINE Alu -1 148 2 1 1508 567 242 35 207 chr11 121095638 121095735 -748121 - B3 SINE B2 0 216 121 1 1508 915 119 8 0 chr11 121095735 121095869 -747987 + B1_Mus1 SINE Alu 2 136 -12 2 1508 186 71 0 0 chr11 121095870 121095898 -747958 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1508 567 242 35 207 chr11 121095898 121096059 -747797 - B3 SINE B2 -96 120 1 1 1508 246 370 100 0 chr11 121096512 121096612 -747244 + RSINE1 SINE B4 56 165 0 2 1508 241 203 85 0 chr11 121096817 121096876 -746980 - RSINE1 SINE B4 -2 163 100 2 1508 541 251 106 20 chr11 121096924 121097123 -746733 - B3 SINE B2 0 216 1 2 1508 333 243 17 127 chr11 121097711 121097829 -746027 - PB1D10 SINE Alu -9 108 4 2 1508 469 179 84 9 chr11 121097832 121097939 -745917 - PB1D9 SINE Alu 0 120 6 2 1508 334 216 101 67 chr11 121097864 121097983 -745873 - MT2B LTR ERVL -347 237 115 2 1508 367 283 85 0 chr11 121099412 121099518 -744338 + PB1D10 SINE Alu 3 117 0 2 1508 774 199 29 0 chr11 121099520 121099656 -744200 + B1_Mur2 SINE Alu 10 149 0 2 1508 259 204 0 58 chr11 121100430 121100482 -743374 + B1F SINE Alu 97 145 -4 2 1508 322 229 14 14 chr11 121100586 121100657 -743199 + B4 SINE B4 11 81 -211 2 1508 744 213 155 0 chr11 121101354 121101509 -742347 - B3 SINE B2 -37 179 1 2 1508 1393 98 0 25 chr11 121101519 121101718 -742138 - B2_Mm2 SINE B2 -1 194 1 2 1508 275 213 141 50 chr11 121101727 121101826 -742030 - PB1D10 SINE Alu -7 110 3 2 1508 22 0 0 0 chr11 121101830 121101852 -742004 + AT_rich Low_complexity Low_complexity 1 22 0 2 1508 798 220 7 0 chr11 121102199 121102340 -741516 - B1_Mur1 SINE Alu -7 142 1 2 1508 450 53 0 0 chr11 121102363 121102420 -741436 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1508 456 275 49 28 chr11 121102432 121102574 -741282 + B1F1 SINE Alu 4 148 -1 2 1508 532 181 143 0 chr11 121103670 121103775 -740081 + PB1D9 SINE Alu 1 120 0 2 1508 400 265 29 43 chr11 121103968 121104106 -739750 + B1F SINE Alu 1 136 -13 2 1508 249 139 0 0 chr11 121104109 121104152 -739704 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 2 1508 1343 180 39 90 chr11 121104153 121104530 -739326 - MTB_Mm LTR MaLR -9 412 6 2 1508 198 103 0 0 chr11 121104559 121104588 -739268 + (TATG)n Simple_repeat Simple_repeat 3 31 0 2 1508 618 14 0 0 chr11 121104821 121104892 -738964 + (TTTTA)n Simple_repeat Simple_repeat 2 72 0 2 1508 1043 89 7 15 chr11 121104896 121105033 -738823 - B1_Mur4 SINE Alu -13 137 2 2 1508 254 315 55 18 chr11 121105126 121105236 -738620 - B1F1 SINE Alu -1 116 3 2 1508 725 178 89 0 chr11 121105684 121105819 -738037 + B1_Mus1 SINE Alu 2 148 0 2 1508 234 91 0 0 chr11 121106616 121106649 -737207 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1508 503 298 42 14 chr11 121106999 121107142 -736714 - B1_Mur2 SINE Alu 0 149 3 2 1508 1000 237 23 23 chr11 121107157 121107203 -736653 - B3 SINE B2 0 216 170 2 1508 219 69 0 0 chr11 121107203 121107232 -736624 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2 1508 1000 237 23 23 chr11 121107232 121107401 -736455 - B3 SINE B2 -47 169 1 2 1508 180 250 0 0 chr11 121107957 121107993 -735863 + L2 LINE L2 45 80 -3339 2 1508 379 241 181 0 chr11 121108535 121108651 -735205 + RLTR18B LTR ERVK 1 137 -375 2 1508 1643 47 0 0 chr11 121108676 121108868 -734988 + B2_Mm1t SINE B2 1 192 -1 2 1508 21 0 0 0 chr11 121108868 121108889 -734967 + AT_rich Low_complexity Low_complexity 1 21 0 2 1508 681 285 21 50 chr11 121108889 121109129 -734727 + RLTR18B LTR ERVK 234 466 -46 2 1508 186 71 0 0 chr11 121109180 121109208 -734648 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1508 1203 50 0 0 chr11 121109211 121109350 -734506 - B1_Mus2 SINE Alu -7 140 2 2 1508 977 140 200 21 chr11 121109455 121109645 -734211 + URR1A DNA MER1_type 1 224 -2 2 1509 1208 68 0 0 chr11 121110893 121111041 -732815 + B1_Mus1 SINE Alu 1 148 0 2 1509 512 183 0 0 chr11 121111401 121111483 -732373 + B3 SINE B2 2 83 -133 2 1509 246 204 0 0 chr11 121111981 121112025 -731831 + B1F SINE Alu 106 149 0 2 1509 259 288 15 0 chr11 121113427 121113493 -730363 - ID4_ SINE ID -9 74 8 2 1509 463 219 210 0 chr11 121114692 121114811 -729045 + RSINE1 SINE B4 3 146 -19 2 1509 968 109 217 26 chr11 121115583 121115772 -728084 + URR1A DNA MER1_type 1 225 -1 2 1509 21 36 0 0 chr11 121115774 121115802 -728054 + AT_rich Low_complexity Low_complexity 1 28 0 2 1509 709 162 8 8 chr11 121116168 121116286 -727570 + B1_Mur4 SINE Alu 22 139 -11 2 1509 786 215 20 50 chr11 121117163 121117364 -726492 - B3A SINE B2 -3 195 1 2 1509 226 281 62 0 chr11 121117399 121117463 -726393 - ID4 SINE ID -11 72 5 2 1509 488 280 41 63 chr11 121117490 121117711 -726145 - ID_B1 SINE B4 -4 220 5 2 1509 233 224 52 13 chr11 121117719 121117796 -726060 + CT-rich Low_complexity Low_complexity 1 80 0 2 1509 210 250 36 0 chr11 121117823 121117879 -725977 - AluG_3 SINE Alu -92 219 162 2 1509 517 282 28 7 chr11 121117935 121118078 -725778 + B1_Mur1 SINE Alu 4 149 0 2 1509 447 202 52 52 chr11 121118212 121118327 -725529 - PB1D10 SINE Alu 0 117 3 2 1509 683 290 27 17 chr11 121118366 121118558 -725298 + B3A SINE B2 1 178 -15 2 1509 655 165 15 69 chr11 121118556 121118686 -725170 + B1_Mus2 SINE Alu 25 147 0 2 1509 277 257 156 35 chr11 121118764 121118905 -724951 + ID_B1 SINE B4 33 190 -34 2 1509 288 211 153 31 chr11 121118957 121119055 -724801 - L1M5 LINE L1 -653 5526 5417 2 1509 438 221 57 9 chr11 121119063 121119168 -724688 + RCHARR1 DNA MER1_type 556 665 -309 2 1509 1174 55 0 7 chr11 121119176 121119324 -724532 + B1_Mus2 SINE Alu 1 147 0 2 1509 609 209 36 22 chr11 121119327 121119464 -724392 + B1_Mur1 SINE Alu 10 148 -1 2 1509 404 145 0 14 chr11 121119466 121119536 -724320 + RCHARR1 DNA MER1_type 657 725 -249 2 1509 355 308 0 0 chr11 121119555 121119646 -724210 + B4A SINE B4 123 213 -79 2 1509 419 299 0 8 chr11 121119704 121119822 -724034 + RCHARR1 DNA MER1_type 741 857 -117 2 1509 658 237 7 15 chr11 121119834 121119971 -723885 + B1_Mur1 SINE Alu 2 137 -12 2 1509 49 71 0 0 chr11 121121446 121121544 -722312 + GC_rich Low_complexity Low_complexity 1 98 0 2 1509 22 61 0 43 chr11 121121676 121121745 -722111 + GC_rich Low_complexity Low_complexity 1 66 0 2 1509 234 0 0 0 chr11 121122485 121122511 -721345 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1509 423 285 34 34 chr11 121122706 121122844 -721012 + B1F SINE Alu 1 140 -9 2 1509 180 0 0 0 chr11 121122844 121122864 -720992 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1509 204 125 0 0 chr11 121123250 121123282 -720574 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2 1509 768 261 54 0 chr11 121123300 121123484 -720372 + B3 SINE B2 23 216 0 2 1509 609 184 20 0 chr11 121123502 121123600 -720256 + B1_Mur2 SINE Alu 2 101 -48 2 1509 613 253 50 31 chr11 121123604 121123763 -720093 - RSINE1 SINE B4 0 165 4 2 1509 28 48 0 0 chr11 121123770 121123812 -720044 + AT_rich Low_complexity Low_complexity 1 42 0 2 1509 296 270 60 51 chr11 121123826 121123943 -719913 - B3A SINE B2 -24 174 57 2 1509 875 186 43 0 chr11 121123949 121124110 -719746 - B3 SINE B2 -40 176 9 2 1509 266 269 72 136 chr11 121124293 121124370 -719486 - PB1D10 SINE Alu 0 117 43 2 1509 838 104 50 43 chr11 121124370 121124511 -719345 - B1_Mus1 SINE Alu -5 143 2 2 1509 266 269 72 136 chr11 121124511 121124558 -719298 - PB1D10 SINE Alu -75 42 1 2 1509 701 164 29 43 chr11 121124612 121124752 -719104 - B1_Mus2 SINE Alu -1 146 9 2 1509 241 242 15 61 chr11 121124848 121124914 -718942 + B4A SINE B4 87 149 -143 2 1509 519 160 18 45 chr11 121124858 121124969 -718887 + PB1D9 SINE Alu 13 120 0 2 1509 1471 64 27 0 chr11 121125201 121125389 -718467 - B2_Mm2 SINE B2 0 195 3 2 1509 980 232 163 56 chr11 121125702 121126021 -717835 + ORR1D2 LTR MaLR 18 370 0 2 1509 867 124 16 0 chr11 121126098 121126227 -717629 + B1_Mus1 SINE Alu 1 131 -17 2 1509 437 223 53 0 chr11 121126391 121126485 -717371 - B3A SINE B2 -99 99 1 2 1509 210 71 0 0 chr11 121126512 121126540 -717316 + (TATG)n Simple_repeat Simple_repeat 4 31 0 2 1509 409 141 282 0 chr11 121126543 121126628 -717228 - PB1D9 SINE Alu -11 109 1 2 1509 1337 40 107 11 chr11 121126658 121126836 -717020 + B2_Mm2 SINE B2 1 195 0 2 1509 622 224 138 27 chr11 121126852 121127040 -716816 - B3 SINE B2 -6 210 2 2 1509 325 279 95 9 chr11 121127120 121127225 -716631 - PB1D7 SINE Alu -6 114 1 2 1509 699 215 0 59 chr11 121128151 121128304 -715552 - B1_Mur2 SINE Alu -1 148 5 2 1509 189 0 0 0 chr11 121128327 121128348 -715508 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1509 247 229 164 41 chr11 121128355 121128428 -715428 - RSINE1 SINE B4 -14 151 70 2 1509 1282 34 0 0 chr11 121128486 121128633 -715223 - B1_Mm SINE Alu 0 147 1 2 1509 262 269 24 71 chr11 121128669 121128753 -715103 - RSINE1 SINE B4 0 165 86 2 1509 225 196 0 0 chr11 121128960 121129006 -714850 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 2 1509 618 224 59 7 chr11 121129008 121129143 -714713 - B1_Mur4 SINE Alu -8 142 1 2 1509 894 193 88 5 chr11 121129672 121129865 -713991 - B3 SINE B2 -6 210 2 2 1509 1151 62 14 14 chr11 121129893 121130040 -713816 - B1_Mus1 SINE Alu 0 148 2 2 1509 180 0 0 0 chr11 121130141 121130161 -713695 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1509 524 63 25 12 chr11 121130163 121130243 -713613 - B1_Mur4 SINE Alu 0 150 70 2 1509 241 241 11 84 chr11 121130243 121130256 -713600 - ID_B1 SINE B4 0 222 137 3 1509 342 0 0 0 chr11 121130300 121130338 -713518 + (GTTTG)n Simple_repeat Simple_repeat 1 38 0 3 1509 459 277 0 18 chr11 121130340 121130454 -713402 - PB1D7 SINE Alu -8 112 1 3 1509 259 233 178 0 chr11 121131599 121131672 -712184 - B4 SINE B4 -12 280 195 3 1509 27 0 0 0 chr11 121131821 121131848 -712008 + AT_rich Low_complexity Low_complexity 1 27 0 3 1509 2862 129 19 0 chr11 121131873 121132285 -711571 + MTC LTR MaLR 1 420 -1 3 1509 252 231 0 19 chr11 121132338 121132391 -711465 + C-rich Low_complexity Low_complexity 5 56 0 3 1509 595 226 30 45 chr11 121132391 121132525 -711331 - B1_Mur1 SINE Alu -6 143 12 3 1509 381 342 46 20 chr11 121134266 121134418 -709438 - RSINE1 SINE B4 -7 158 3 3 1509 739 122 32 8 chr11 121134443 121134567 -709289 - B1_Mm SINE Alu 0 147 21 3 1509 369 197 40 0 chr11 121134598 121134674 -709182 + B3 SINE B2 1 79 -137 3 1509 307 266 35 60 chr11 121134703 121134719 -709137 + MT2B LTR ERVL 151 163 -438 3 1509 536 180 128 38 chr11 121134719 121134840 -709016 + B1_Mur1 SINE Alu 3 139 -10 3 1509 306 0 0 0 chr11 121134840 121134874 -708982 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 3 1509 536 180 128 38 chr11 121134874 121134885 -708971 + B1_Mur1 SINE Alu 140 147 -2 3 1509 315 291 114 19 chr11 121134905 121135010 -708846 + B3 SINE B2 5 119 -97 3 1509 349 185 134 0 chr11 121135183 121135290 -708566 - PB1D9 SINE Alu -24 125 6 3 1509 433 283 57 14 chr11 121135895 121136035 -707821 - B1F1 SINE Alu 0 149 4 3 1509 455 194 0 54 chr11 121136072 121136219 -707637 + (TTTA)n Simple_repeat Simple_repeat 1 139 0 3 1509 623 209 50 7 chr11 121136219 121136359 -707497 - B1_Mur3 SINE Alu -1 148 3 3 1509 299 264 97 60 chr11 121136360 121136545 -707311 - B3A SINE B2 -6 192 1 3 1509 561 258 0 16 chr11 121136554 121136676 -707180 - PB1D7 SINE Alu 0 120 1 3 1509 232 178 0 22 chr11 121136686 121136732 -707124 - L1MB4 LINE L1 -5362 1283 1239 3 1509 254 274 0 171 chr11 121136739 121136759 -707097 - ID4_ SINE ID 0 83 68 3 1509 201 74 0 0 chr11 121136759 121136786 -707070 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1509 254 274 0 171 chr11 121136786 121136853 -707003 - ID4_ SINE ID -16 67 11 3 1509 234 155 155 0 chr11 121136861 121136932 -706924 - L1MB4 LINE L1 -5368 1239 1158 3 1509 304 317 19 19 chr11 121137487 121137590 -706266 + RSINE1 SINE B4 3 105 -60 3 1509 229 82 41 0 chr11 121137774 121137823 -706033 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1509 827 164 244 28 chr11 121138433 121138609 -705247 - B3 SINE B2 -1 215 2 3 1509 464 86 14 0 chr11 121138686 121138756 -705100 + (TCC)n Simple_repeat Simple_repeat 2 72 0 3 1509 623 84 0 10 chr11 121139392 121139488 -704368 + (GA)n Simple_repeat Simple_repeat 1 95 0 3 1509 230 184 0 0 chr11 121139884 121139922 -703934 - B3A SINE B2 -158 40 3 3 1509 416 261 72 0 chr11 121139925 121140036 -703820 - ID_B1 SINE B4 -1 223 105 3 1509 715 153 86 14 chr11 121140235 121140374 -703482 - B1_Mur4 SINE Alu -1 149 1 3 1509 1245 42 0 0 chr11 121140403 121140547 -703309 + B1_Mus1 SINE Alu 1 144 -4 3 1509 653 223 93 34 chr11 121140566 121140770 -703086 - B3 SINE B2 0 216 1 3 1509 1066 45 0 58 chr11 121140792 121140983 -702873 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1509 346 274 90 45 chr11 121140983 121141117 -702739 - B4A SINE B4 -127 165 26 3 1509 525 55 0 0 chr11 121141142 121141215 -702641 + (TGG)n Simple_repeat Simple_repeat 2 74 0 3 1509 264 299 81 36 chr11 121141255 121141366 -702490 - PB1D10 SINE Alu -1 116 1 3 1509 706 168 29 0 chr11 121141598 121141735 -702121 - B1_Mus1 SINE Alu -7 141 1 3 1509 289 350 43 18 chr11 121142245 121142408 -701448 - MER46C DNA MER2_type -132 206 40 3 1509 607 252 23 0 chr11 121143058 121143189 -700667 - ID_B1 SINE B4 -7 217 84 3 1509 230 91 0 0 chr11 121143291 121143324 -700532 - L1M LINE L1 -764 5398 5366 3 1509 237 319 76 11 chr11 121143761 121143853 -700003 - RSINE1 SINE B4 -11 154 57 3 1509 304 292 136 15 chr11 121144178 121144310 -699546 - L1ME3 LINE L1 -276 5886 5739 3 1509 286 254 27 9 chr11 121144429 121144514 -699342 - ID4_ SINE ID -51 101 13 3 1509 403 255 10 30 chr11 121144546 121144647 -699209 - PB1D10 SINE Alu -10 107 9 3 1509 227 242 0 61 chr11 121144599 121144665 -699191 - B4 SINE B4 -152 140 79 3 1509 216 158 0 0 chr11 121144930 121144968 -698888 + (TTCG)n Simple_repeat Simple_repeat 3 40 0 3 1509 243 0 0 0 chr11 121145032 121145059 -698797 + (ACTG)n Simple_repeat Simple_repeat 4 30 0 3 1509 203 133 0 0 chr11 121145086 121145116 -698740 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1509 464 267 67 0 chr11 121145158 121145263 -698593 - PB1D10 SINE Alu 0 117 6 3 1509 824 259 52 0 chr11 121145297 121145490 -698366 + B3 SINE B2 1 203 -13 3 1509 636 197 28 35 chr11 121145549 121145691 -698165 + B1_Mur2 SINE Alu 1 141 -8 3 1509 473 250 66 59 chr11 121146433 121146569 -697287 - ID_B1 SINE B4 0 224 88 3 1509 278 295 38 30 chr11 121147128 121147261 -696595 - Lx8 LINE L1 -288 7185 7052 3 1509 193 207 0 24 chr11 121147435 121147519 -696337 + (GGGTG)n Simple_repeat Simple_repeat 3 84 0 3 1509 301 292 19 103 chr11 121147573 121147680 -696176 - B1_Mur1 SINE Alu -10 139 42 3 1509 261 0 0 0 chr11 121147723 121147752 -696104 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1509 1407 41 0 0 chr11 121147752 121147921 -695935 - B2_Mm1t SINE B2 -24 169 1 3 1509 559 264 74 34 chr11 121148067 121148216 -695640 + B3 SINE B2 11 165 -51 3 1509 414 0 0 0 chr11 121148216 121148262 -695594 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1509 380 287 32 65 chr11 121148262 121148298 -695558 + B2_Mm2 SINE B2 153 190 -5 3 1509 777 155 237 6 chr11 121148311 121148480 -695376 + B3 SINE B2 1 208 -8 3 1509 1224 61 0 0 chr11 121148502 121148649 -695207 + B1_Mm SINE Alu 1 147 0 3 1509 250 388 25 41 chr11 121148786 121148907 -694949 + PB1D7 SINE Alu 1 119 -1 3 1509 285 262 142 28 chr11 121149060 121149166 -694690 + B3 SINE B2 99 216 0 3 1509 1377 222 143 34 chr11 121149470 121149848 -694008 - MTD LTR MaLR 0 419 1 3 1509 632 252 15 8 chr11 121150327 121150459 -693397 + B1F2 SINE Alu 10 142 -7 3 1509 285 289 0 57 chr11 121150478 121150566 -693290 + RSINE1 SINE B4 27 109 -56 3 1509 803 203 47 26 chr11 121151090 121151282 -692574 + B3 SINE B2 5 200 -16 3 1509 667 154 17 25 chr11 121151779 121151899 -691957 - B1_Mur3 SINE Alu 0 149 31 3 1509 296 43 0 0 chr11 121152452 121152499 -691357 - L1Md_T LINE L1 0 6582 6536 3 1509 243 0 0 0 chr11 121152828 121152855 -691001 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1509 685 219 0 21 chr11 121152855 121152995 -690861 - B1_Mur2 SINE Alu -10 139 3 3 1509 1169 41 14 20 chr11 121153343 121153491 -690365 + B1_Mus1 SINE Alu 2 148 0 3 1509 304 245 98 10 chr11 121153497 121153596 -690260 - B1_Mur3 SINE Alu -13 104 1 3 1509 231 222 90 90 chr11 121153524 121153613 -690243 - B4A SINE B4 -127 165 77 3 1509 915 114 15 8 chr11 121154423 121154555 -689301 - B1_Mus1 SINE Alu -15 133 1 3 1509 528 296 167 80 chr11 121154725 121154989 -688867 + B4 SINE B4 2 288 -4 3 1509 429 273 36 9 chr11 121158573 121158684 -685172 + PB1D10 SINE Alu 4 117 0 3 1509 288 0 0 0 chr11 121158718 121158750 -685106 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1509 750 53 0 0 chr11 121159062 121159157 -684699 + BC1_Mm scRNA scRNA 2 96 -56 3 1509 187 200 0 24 chr11 121159234 121159275 -684581 + L4 LINE RTE 334 373 -1656 3 1509 554 272 62 43 chr11 121159316 121159527 -684329 + B3 SINE B2 2 216 0 3 1509 1332 105 16 0 chr11 121159563 121159754 -684102 - B2_Mm2 SINE B2 -1 194 1 3 1509 249 320 0 0 chr11 121160297 121160372 -683484 - ID4_ SINE ID -7 76 2 3 1509 410 260 130 43 chr11 121160383 121160568 -683288 - B3 SINE B2 -13 203 3 3 1509 234 0 0 0 chr11 121160594 121160620 -683236 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1509 297 253 0 62 chr11 121160620 121160693 -683163 - ID SINE ID -147 77 9 3 1509 183 42 0 0 chr11 121160715 121160739 -683117 + (C)n Simple_repeat Simple_repeat 1 24 0 3 1509 869 244 53 10 chr11 121161338 121161545 -682311 - B3 SINE B2 0 216 1 3 1509 533 296 122 39 chr11 121161590 121161794 -682062 - MTEa LTR MaLR -5 374 154 3 1509 318 295 95 35 chr11 121161806 121161922 -681934 - RSINE1 SINE B4 -31 134 12 3 1509 368 221 58 0 chr11 121161909 121162013 -681843 - RCHARR1 DNA MER1_type -214 760 651 3 1509 431 232 155 94 chr11 121162030 121162211 -681645 + B3A SINE B2 4 195 -3 3 1509 1222 34 0 20 chr11 121162317 121162467 -681389 - B1_Mus2 SINE Alu 0 147 1 3 1509 741 228 297 36 chr11 121162563 121163089 -680767 - RCHARR1 DNA MER1_type -311 663 1 3 1509 281 196 36 0 chr11 121163443 121163499 -680357 - B3 SINE B2 -100 116 59 3 1509 183 80 0 0 chr11 121163509 121163534 -680322 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 1509 1036 114 67 0 chr11 121163535 121163684 -680172 - B2_Mm2 SINE B2 -35 160 2 3 1509 1287 80 0 0 chr11 121163689 121163852 -680004 - B2_Mm2 SINE B2 -31 164 2 3 1509 257 317 78 10 chr11 121164049 121164151 -679705 + B4A SINE B4 184 292 0 4 1509 275 305 0 0 chr11 121164417 121164499 -679357 + CT-rich Low_complexity Low_complexity 2 83 0 4 1509 443 341 75 8 chr11 121164516 121164649 -679207 + RSINE1 SINE B4 3 144 -21 4 1509 26 50 0 0 chr11 121164656 121164696 -679160 + AT_rich Low_complexity Low_complexity 1 40 0 4 1509 320 314 14 27 chr11 121164739 121164865 -678991 + B1_Mus2 SINE Alu 2 120 -27 4 1509 617 228 59 0 chr11 121164902 121165038 -678818 - B3 SINE B2 -5 211 68 4 1509 389 244 0 49 chr11 121165089 121165171 -678685 - ID4_ SINE ID 0 83 6 4 1509 488 217 175 0 chr11 121165187 121165307 -678549 - B1_Mur1 SINE Alu -6 143 3 4 1509 244 250 20 98 chr11 121166389 121166474 -677382 + BC1_Mm scRNA scRNA 21 97 -55 4 1509 1279 34 0 0 chr11 121166474 121166621 -677235 + B1_Mus2 SINE Alu 1 147 0 4 1509 244 250 20 98 chr11 121166621 121166637 -677219 + BC1_Mm scRNA scRNA 98 113 -39 4 1509 360 304 184 26 chr11 121167145 121167378 -676478 - MLT2D LTR ERVL -139 275 6 4 1509 327 248 158 0 chr11 121167415 121167516 -676340 + PB1D9 SINE Alu 2 118 -2 4 1509 442 260 31 0 chr11 121167599 121167695 -676161 - RSINE1 SINE B4 -28 137 39 4 1509 26 0 0 0 chr11 121171185 121171211 -672645 + AT_rich Low_complexity Low_complexity 1 26 0 4 1509 809 33 225 62 chr11 121172197 121172326 -671530 + B1_Mur4 SINE Alu 1 150 0 4 1509 2068 118 264 29 chr11 121172355 121172799 -671057 - RLTR6_Mm LTR ERV1 -70 584 37 4 1509 275 228 200 38 chr11 121172801 121172906 -670950 - RLTR6_Mm LTR ERV1 -532 122 1 4 1509 66161 32 18 2 chr11 121172906 121178931 -664925 - RLTR6-int LTR ERV1 0 7778 1702 4 1509 1582 42 11 0 chr11 121178931 121179121 -664735 - B2_Mm1a SINE B2 0 193 2 4 1509 66161 32 18 2 chr11 121179121 121180755 -663101 - RLTR6-int LTR ERV1 -6077 1701 1 4 1509 2103 129 253 28 chr11 121180756 121181219 -662637 - RLTR6_Mm LTR ERV1 -51 603 37 4 1509 275 228 200 38 chr11 121181221 121181326 -662530 - RLTR6_Mm LTR ERV1 -532 122 1 4 1509 1121 167 139 84 chr11 121182026 121182060 -661796 - RMER10A LTR ERVL 0 442 396 4 1509 186 43 0 0 chr11 121182060 121182083 -661773 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 4 1509 1121 167 139 84 chr11 121182083 121182415 -661441 - RMER10A LTR ERVL -47 395 57 4 1509 378 169 0 0 chr11 121182457 121182516 -661340 + ID4_ SINE ID 15 73 -10 4 1509 314 264 10 99 chr11 121182516 121182558 -661298 + ID_B1 SINE B4 15 106 -118 4 1509 393 198 183 35 chr11 121182652 121182767 -661089 + RSINE1 SINE B4 3 134 -31 4 1509 1361 54 54 0 chr11 121182828 121183013 -660843 + B2_Mm2 SINE B2 1 195 0 4 1509 426 193 34 0 chr11 121183026 121183114 -660742 + ORR1D1 LTR MaLR 5 95 -279 4 1509 415 195 140 54 chr11 121183125 121183271 -660585 + ORR1D1 LTR MaLR 155 302 -76 4 1509 625 224 44 31 chr11 121183266 121183425 -660431 + B3 SINE B2 39 191 -2 4 1509 367 109 94 42 chr11 121183439 121183535 -660321 - Lx LINE L1 0 6654 6554 4 1509 1845 110 82 3 chr11 121183802 121184084 -659772 + ORR1A3 LTR MaLR 15 318 -8 4 1509 216 0 0 0 chr11 121184252 121184276 -659580 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1509 435 252 64 43 chr11 121184575 121184590 -659266 + ID_B1 SINE B4 78 219 -3 4 1509 647 186 97 0 chr11 121184590 121184714 -659142 + B1_Mus1 SINE Alu 8 143 -5 4 1509 434 198 47 0 chr11 121185047 121185133 -658723 - B3 SINE B2 -92 124 35 4 1509 213 108 0 0 chr11 121185314 121185351 -658505 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1509 1213 54 0 0 chr11 121185351 121185499 -658357 - B1_Mus1 SINE Alu 0 148 1 4 1509 236 342 0 13 chr11 121185574 121185651 -658205 - ID4_ SINE ID -6 77 2 4 1509 1375 76 32 5 chr11 121185686 121185872 -657984 - B2_Mm1t SINE B2 -1 192 2 4 1509 347 343 39 0 chr11 121185907 121186009 -657847 + PB1D7 SINE Alu 9 114 -6 4 1509 268 192 295 13 chr11 121186017 121186028 -657828 + ID_B1 SINE B4 75 110 -114 4 1509 260 262 158 0 chr11 121186028 121186132 -657724 + B1_Mur4 SINE Alu 1 119 -1 4 1509 424 268 38 61 chr11 121186489 121186620 -657236 + B1F2 SINE Alu 1 128 -21 4 1509 372 194 200 21 chr11 121186832 121186927 -656929 + ID_B1 SINE B4 113 224 0 4 1509 844 151 50 7 chr11 121187096 121187236 -656620 + B1_Mus2 SINE Alu 1 146 -1 4 1509 586 222 116 28 chr11 121190346 121190503 -653353 - B3 SINE B2 -6 210 55 4 1509 1181 54 0 20 chr11 121191663 121191813 -652043 - B1_Mus1 SINE Alu 0 148 2 4 1509 408 290 75 0 chr11 121192516 121192623 -651233 + PB1D9 SINE Alu 1 115 -5 4 1509 212 295 86 35 chr11 121192742 121192858 -650998 - ID_B1 SINE B4 -5 219 98 4 1509 238 228 12 71 chr11 121192979 121193064 -650792 - Tigger5 DNA MER2_type -164 2242 2163 4 1509 280 294 88 35 chr11 121193308 121193421 -650435 - Tigger5 DNA MER2_type -2277 129 11 4 1509 304 308 13 0 chr11 121193425 121193503 -650353 + BC1_Mm scRNA scRNA 7 85 -67 4 1509 246 339 0 0 chr11 121193646 121193708 -650148 - B4A SINE B4 -9 283 222 4 1509 923 142 216 0 chr11 121193709 121193885 -649971 - B3 SINE B2 -2 214 1 4 1509 1392 77 28 0 chr11 121193895 121194077 -649779 - B2_Mm2 SINE B2 -8 187 1 4 1509 2117 113 16 75 chr11 121194077 121194451 -649405 - ORR1B1 LTR MaLR -42 352 1 4 1509 243 323 75 0 chr11 121194636 121194729 -649127 - PB1D10 SINE Alu -13 104 5 4 1509 303 28 0 0 chr11 121194732 121194768 -649088 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1509 454 200 193 35 chr11 121194768 121194882 -648974 - B1_Mur1 SINE Alu -11 138 7 4 1509 189 0 0 0 chr11 121194890 121194911 -648945 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1509 276 276 0 0 chr11 121194911 121194969 -648887 - B1F SINE Alu -49 100 43 4 1509 529 284 83 39 chr11 121195063 121195268 -648588 - ID_B1 SINE B4 -7 217 4 4 1509 924 138 0 52 chr11 121195313 121195466 -648390 + B1_Mur4 SINE Alu 3 147 -3 4 1509 943 247 120 88 chr11 121196044 121196386 -647470 + ORR1E LTR MaLR 7 359 0 4 1509 231 200 57 0 chr11 121197180 121197250 -646606 + L1M5 LINE L1 4368 4441 -1705 4 1509 452 182 67 43 chr11 121197603 121197724 -646132 + PB1D10 SINE Alu 7 126 -23 4 1509 359 260 9 86 chr11 121198529 121198634 -645222 - PB1D7 SINE Alu 0 120 24 4 1509 487 314 38 55 chr11 121198596 121198799 -645057 - ID_B1 SINE B4 -2 222 28 4 1509 1538 54 0 0 chr11 121199021 121199206 -644650 + B2_Mm1a SINE B2 1 185 -8 4 1509 456 181 92 37 chr11 121199219 121199328 -644528 + PB1D10 SINE Alu 2 116 -1 4 1509 654 281 6 30 chr11 121200864 121201029 -642827 + B3A SINE B2 27 187 -11 4 1509 281 224 63 38 chr11 121201045 121201124 -642732 + ID4_ SINE ID 3 83 0 4 1509 369 262 92 6 chr11 121201157 121201275 -642581 + RSINE1 SINE B4 6 132 -33 4 1509 444 91 0 0 chr11 121201925 121201991 -641865 + (GGGAA)n Simple_repeat Simple_repeat 1 66 0 4 1509 207 0 0 0 chr11 121202251 121202274 -641582 + (TCCA)n Simple_repeat Simple_repeat 1 23 0 4 1509 691 225 22 7 chr11 121202639 121202778 -641078 - B1_Mur1 SINE Alu -7 142 2 4 1509 925 246 30 0 chr11 121202801 121203004 -640852 - B3 SINE B2 -7 209 1 4 1509 469 194 27 36 chr11 121203022 121203134 -640722 - PB1D9 SINE Alu -8 112 2 4 1509 1199 69 0 0 chr11 121203148 121203293 -640563 - B1_Mus2 SINE Alu 0 147 3 4 1509 207 0 0 0 chr11 121203494 121203517 -640339 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1509 617 206 2 34 chr11 121203521 121203654 -640202 - B1_Mus2 SINE Alu -18 131 1 4 1509 410 171 15 159 chr11 121203691 121203823 -640033 + MT2B LTR ERVL 152 264 -337 4 1509 1131 68 0 27 chr11 121203708 121203858 -639998 + B1_Mus1 SINE Alu 3 148 0 4 1509 216 0 0 0 chr11 121203858 121203882 -639974 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1509 279 280 187 38 chr11 121203969 121204213 -639643 + L1M3 LINE L1 5589 5895 -288 4 1509 1098 75 0 27 chr11 121204436 121204586 -639270 + B1_Mus1 SINE Alu 3 148 0 4 1509 3192 138 151 45 chr11 121205016 121205700 -638156 - RMER6A LTR ERVK 0 756 1 4 1509 347 218 44 33 chr11 121205708 121205798 -638058 - B1F SINE Alu 0 149 59 4 1509 1703 16 5 0 chr11 121205939 121206130 -637726 - B2_Mm1a SINE B2 0 193 2 4 1509 717 169 56 49 chr11 121206577 121206720 -637136 - B1_Mus2 SINE Alu -2 145 2 4 1509 1185 55 7 0 chr11 121206766 121206911 -636945 - B1_Mus2 SINE Alu 0 147 2 4 1509 970 256 0 0 chr11 121207417 121207608 -636248 + B3 SINE B2 1 191 -25 4 1509 1729 145 64 116 chr11 121207703 121208124 -635732 + MTC LTR MaLR 8 406 -15 4 1509 1286 57 55 33 chr11 121208133 121208314 -635542 - B2_Mm2 SINE B2 -9 186 2 4 1509 3689 152 115 75 chr11 121208377 121209167 -634689 - RMER19B LTR ERVK -79 823 2 4 1509 555 252 16 16 chr11 121209168 121209289 -634567 - B1_Mur1 SINE Alu -18 131 11 4 1509 973 208 32 11 chr11 121209608 121209793 -634063 + B3 SINE B2 5 193 -23 4 1509 287 264 48 113 chr11 121209837 121209961 -633895 - PB1D10 SINE Alu -1 116 1 4 1509 1521 53 21 0 chr11 121210090 121210278 -633578 + B2_Mm1a SINE B2 2 193 0 4 1509 846 253 10 55 chr11 121212226 121212427 -631429 - B3 SINE B2 -23 193 2 4 1509 588 292 63 45 chr11 121212454 121212723 -631133 + B4A SINE B4 1 274 -18 4 1509 1008 116 20 0 chr11 121212837 121212984 -630872 + B1_Mur4 SINE Alu 1 150 0 4 1509 458 250 28 0 chr11 121213093 121213201 -630655 - PB1D10 SINE Alu -1 116 6 4 1509 529 278 78 13 chr11 121213117 121213270 -630586 - ID_B1 SINE B4 -54 170 8 5 1509 1637 209 71 8 chr11 121213270 121213622 -630234 + ORR1D1 LTR MaLR 1 374 0 5 1509 213 65 0 0 chr11 121213653 121213684 -630172 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 1509 818 193 0 14 chr11 121213684 121213826 -630030 - B1_Mur3 SINE Alu -7 142 3 5 1509 377 200 24 18 chr11 121213862 121213977 -629879 - B1_Mus2 SINE Alu -1 146 9 5 1509 273 130 54 36 chr11 121214414 121214470 -629386 + B1_Mur2 SINE Alu 92 148 -1 5 1509 449 180 259 9 chr11 121214786 121214898 -628958 + B1_Mus2 SINE Alu 6 145 -2 5 1509 354 324 53 20 chr11 121217118 121217269 -626587 - B4A SINE B4 -43 249 94 5 1509 440 271 103 22 chr11 121217140 121217276 -626580 - B1F SINE Alu -1 148 2 5 1509 614 222 37 7 chr11 121218212 121218348 -625508 - B1F1 SINE Alu -8 141 2 5 1509 293 284 13 90 chr11 121218348 121218362 -625494 + YREP_Mm Unknown Unknown 187 324 -1488 5 1509 344 241 76 0 chr11 121218955 121219034 -624822 - RSINE1 SINE B4 -79 86 2 5 1509 945 274 167 13 chr11 121219423 121219819 -624037 + MLT1C LTR MaLR 8 464 -3 5 1509 490 240 12 8 chr11 121220254 121220367 -623489 - B1_Mur3 SINE Alu -2 115 1 5 1509 405 0 0 0 chr11 121221153 121221198 -622658 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1509 234 354 84 54 chr11 121221224 121221391 -622465 - B3A SINE B2 -16 182 11 5 1509 765 224 47 13 chr11 121221244 121221393 -622463 - RSINE1 SINE B4 -2 163 10 5 1509 201 105 17 34 chr11 121221394 121221430 -622426 + T-rich Low_complexity Low_complexity 24 59 0 5 1509 1254 41 0 7 chr11 121221430 121221578 -622278 - B1_Mm SINE Alu 0 147 1 5 1509 201 105 17 34 chr11 121221578 121221600 -622256 + T-rich Low_complexity Low_complexity 3 23 0 5 1509 1237 34 0 26 chr11 121221607 121221758 -622098 - B1_Mm SINE Alu 0 147 1 5 1509 243 295 0 0 chr11 121221761 121221822 -622034 - PB1D7 SINE Alu -1 119 59 5 1509 242 269 114 122 chr11 121221818 121221844 -622012 - MT2B LTR ERVL -317 284 203 5 1509 294 294 120 0 chr11 121221844 121221936 -621920 - PB1D10 SINE Alu -5 112 10 5 1509 242 269 114 122 chr11 121221936 121221949 -621907 - MT2B LTR ERVL -317 202 155 5 1509 1106 88 0 33 chr11 121221974 121222126 -621730 - B1_Mus2 SINE Alu 0 147 1 5 1509 829 221 85 5 chr11 121222165 121222365 -621491 - B3 SINE B2 0 216 1 5 1509 868 122 65 0 chr11 121222387 121222526 -621330 + B1_Mus1 SINE Alu 1 148 0 5 1509 693 194 15 7 chr11 121222592 121222727 -621129 + B1_Mur1 SINE Alu 5 140 -9 5 1509 1233 69 62 11 chr11 121222749 121222925 -620931 + B2_Mm2 SINE B2 1 185 -10 5 1509 986 209 82 0 chr11 121223931 121224127 -619729 - B3 SINE B2 -1 215 4 5 1509 206 231 19 0 chr11 121225610 121225662 -618194 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1509 475 214 186 12 chr11 121225722 121225768 -618088 - B3A SINE B2 -5 193 142 5 1509 234 91 0 0 chr11 121225768 121225801 -618055 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1509 475 214 186 12 chr11 121225801 121225915 -617941 - B3A SINE B2 -57 141 6 5 1509 1143 73 42 0 chr11 121225945 121226110 -617746 + B2_Mm2 SINE B2 2 173 -22 5 1509 40 0 0 0 chr11 121226111 121226151 -617705 + AT_rich Low_complexity Low_complexity 1 40 0 5 1509 473 136 45 0 chr11 121226154 121226242 -617614 + B1_Mur2 SINE Alu 49 140 -9 5 1509 256 306 52 43 chr11 121226287 121226403 -617453 - RSINE1 SINE B4 0 165 49 5 1509 304 300 109 51 chr11 121226601 121226738 -617118 - RSINE1 SINE B4 -19 146 2 5 1509 778 158 14 0 chr11 121226767 121226906 -616950 - B1_Mus2 SINE Alu -1 146 6 5 1509 428 196 9 81 chr11 121226809 121226920 -616936 - MT2B LTR ERVL -344 257 155 5 1509 302 287 29 116 chr11 121227083 121227096 -616760 - PB1 SINE Alu 0 127 3 5 1509 538 260 89 8 chr11 121227096 121227220 -616636 - ID_B1 SINE B4 -7 217 84 5 1509 222 135 0 51 chr11 121227339 121227378 -616478 + B3 SINE B2 23 59 -157 5 1509 534 196 0 0 chr11 121227471 121227568 -616288 - B1F2 SINE Alu 0 149 53 5 1509 1459 44 66 0 chr11 121229191 121229353 -614503 + B2_Mm1t SINE B2 1 174 -19 5 1509 189 0 0 0 chr11 121229353 121229374 -614482 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5 1509 1459 44 66 0 chr11 121229374 121229392 -614464 + B2_Mm1t SINE B2 175 192 -1 5 1509 457 214 124 85 chr11 121229409 121229562 -614294 - RSINE1 SINE B4 -3 162 4 5 1509 1155 102 0 28 chr11 121229628 121229787 -614069 + B2_Mm2 SINE B2 1 158 -37 5 1509 387 0 0 0 chr11 121229787 121229830 -614026 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 5 1509 1155 102 0 28 chr11 121229830 121229851 -614005 + B2_Mm2 SINE B2 159 176 -19 5 1509 450 280 52 15 chr11 121230018 121230152 -613704 - ID_B1 SINE B4 0 224 86 5 1509 309 302 65 9 chr11 121230178 121230285 -613571 - PB1D10 SINE Alu -1 116 4 5 1509 1053 124 0 0 chr11 121230571 121230795 -613061 + (TG)n Simple_repeat Simple_repeat 1 224 0 5 1509 1196 47 0 7 chr11 121230909 121231058 -612798 - B1_Mus1 SINE Alu 0 148 1 5 1509 452 176 496 0 chr11 121231083 121231211 -612645 - B3 SINE B2 -4 212 21 5 1509 603 234 0 0 chr11 121231237 121231365 -612491 - ID_B1 SINE B4 -3 221 94 5 1509 229 329 0 0 chr11 121232016 121232086 -611770 + G-rich Low_complexity Low_complexity 3 72 0 5 1509 186 103 0 0 chr11 121232281 121232310 -611546 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1509 642 185 138 0 chr11 121232315 121232445 -611411 - B1_Mur1 SINE Alu 0 149 2 5 1509 320 205 0 82 chr11 121232446 121232531 -611325 + B3A SINE B2 121 198 0 5 1509 270 176 0 0 chr11 121233745 121233796 -610060 + A-rich Low_complexity Low_complexity 1 51 0 5 1509 192 40 0 0 chr11 121234473 121234498 -609358 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1509 198 0 0 0 chr11 121234754 121234776 -609080 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1509 486 211 118 15 chr11 121234820 121234955 -608901 + RSINE1 SINE B4 7 155 -10 5 1509 357 24 0 0 chr11 121234960 121235002 -608854 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1509 776 161 0 44 chr11 121235364 121235500 -608356 - B1_Mur3 SINE Alu -3 146 17 5 1509 278 291 34 23 chr11 121236838 121236926 -606930 + B1F1 SINE Alu 10 98 -51 5 1509 897 112 34 40 chr11 121237097 121237246 -606610 - B1_Mus1 SINE Alu 0 148 1 5 1509 786 197 20 69 chr11 121237363 121237565 -606291 - B2_Mm2 SINE B2 -3 192 1 5 1509 726 240 101 15 chr11 121237676 121237875 -605981 + B3 SINE B2 1 216 0 5 1509 633 262 5 126 chr11 121238243 121238457 -605399 + ID_B1 SINE B4 3 190 -34 5 1509 398 303 111 42 chr11 121238533 121238750 -605106 + MLT1C LTR MaLR 45 276 -191 5 1509 922 200 10 53 chr11 121239879 121239921 -603935 + B3 SINE B2 4 43 -173 5 1509 998 135 0 7 chr11 121239921 121240070 -603786 + B1_Mus1 SINE Alu 1 148 0 5 1509 922 200 10 53 chr11 121240070 121240233 -603623 + B3 SINE B2 44 200 -16 5 1509 537 186 39 0 chr11 121240516 121240618 -603238 + B3 SINE B2 97 202 -14 5 1509 229 400 0 0 chr11 121241061 121241146 -602710 - PB1D10 SINE Alu -31 86 2 5 1509 542 308 8 0 chr11 121241146 121241207 -602649 - ID SINE ID -142 82 21 5 1509 414 218 194 0 chr11 121241258 121241382 -602474 + RSINE1 SINE B4 2 149 -16 5 1509 423 0 0 0 chr11 121241382 121241429 -602427 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1509 215 256 49 37 chr11 121241430 121241511 -602345 + ID4 SINE ID 1 82 -1 5 1510 1327 191 145 77 chr11 121243176 121243555 -600301 + MTD LTR MaLR 1 405 -14 5 1510 266 265 152 41 chr11 121243693 121243937 -599919 + L1ME3A LINE L1 5133 5403 -743 5 1510 431 327 29 119 chr11 121243968 121244119 -599737 - ID_B1 SINE B4 -2 222 91 5 1510 909 174 157 0 chr11 121244119 121244154 -599702 - B3 SINE B2 -10 206 172 5 1510 333 68 0 0 chr11 121244154 121244198 -599658 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1510 909 174 157 0 chr11 121244198 121244340 -599516 - B3 SINE B2 -45 171 2 5 1510 431 327 29 119 chr11 121244340 121244431 -599425 - ID_B1 SINE B4 -134 90 2 5 1510 839 249 14 121 chr11 121244451 121244666 -599190 + B3 SINE B2 1 192 -3 5 1510 439 344 49 0 chr11 121245190 121245414 -598442 + L1ME3A LINE L1 5939 6173 0 5 1510 638 213 66 0 chr11 121245600 121245722 -598134 - B3 SINE B2 -86 130 1 5 1510 1036 212 19 24 chr11 121245744 121245957 -597899 - B3 SINE B2 0 216 5 5 1510 1351 96 0 26 chr11 121245999 121246192 -597664 + B2_Mm2 SINE B2 1 188 -7 5 1510 1450 75 37 0 chr11 121246614 121246802 -597054 + B2_Mm2 SINE B2 1 195 0 5 1510 295 294 140 0 chr11 121246804 121246940 -596916 + MLT1D LTR MaLR 187 341 -164 5 1510 225 282 50 25 chr11 121246973 121247053 -596803 + MLT1D LTR MaLR 424 505 0 5 1510 1150 54 0 13 chr11 121247446 121247596 -596260 - B1_Mus1 SINE Alu 0 148 1 5 1510 588 200 0 91 chr11 121247934 121248066 -595790 - PB1D7 SINE Alu 0 120 1 5 1510 236 254 45 0 chr11 121248424 121248491 -595365 + MER3 DNA MER1_type 2 71 -138 5 1510 192 40 0 0 chr11 121250111 121250136 -593720 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1510 745 164 60 0 chr11 121250611 121250745 -593111 - B1_Mus1 SINE Alu -6 142 1 5 1510 432 245 66 0 chr11 121251098 121251204 -592652 + MTEa LTR MaLR 1 113 -266 5 1510 375 318 138 28 chr11 121251204 121251460 -592396 + MT2A LTR ERVL 1 402 -131 5 1510 288 0 0 0 chr11 121251508 121251540 -592316 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1510 509 242 25 0 chr11 121251595 121251715 -592141 + B1F1 SINE Alu 27 149 0 5 1510 729 247 22 11 chr11 121251805 121251985 -591871 - B3A SINE B2 -16 182 1 5 1510 1948 126 82 17 chr11 121252139 121252493 -591363 + ORR1C2 LTR MaLR 2 378 -6 6 1510 815 256 5 30 chr11 121252480 121252681 -591175 + ID_B1 SINE B4 26 221 -3 6 1510 1066 191 59 0 chr11 121252881 121253085 -590771 + B3 SINE B2 1 216 0 6 1510 776 159 22 0 chr11 121253970 121254108 -589748 + B1_Mur3 SINE Alu 9 149 0 6 1510 246 81 0 0 chr11 121254243 121254280 -589576 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1510 225 167 130 0 chr11 121255315 121255369 -588487 - ID4 SINE ID -11 72 12 6 1510 9185 87 77 14 chr11 121255376 121256693 -587163 + Lx2 LINE L1 5597 6997 0 6 1510 27 0 0 0 chr11 121256693 121256720 -587136 + AT_rich Low_complexity Low_complexity 1 27 0 6 1510 3685 44 5 0 chr11 121257541 121257975 -585881 - RLTR10C LTR ERVK 0 436 1 6 1510 46455 9 0 0 chr11 121257975 121263005 -580851 - MMERVK10C-int LTR ERVK 0 7581 2552 6 1510 362 111 0 0 chr11 121263011 121263074 -580782 - MMERVK10C-int LTR ERVK -5634 1947 1885 6 1510 313 175 0 0 chr11 121263079 121263136 -580720 - MMERVK10C-int LTR ERVK -4261 1145 1089 6 1510 379 229 147 40 chr11 121263123 121263273 -580583 - MMERVK10C-int LTR ERVK -5449 688 523 6 1510 636 211 102 107 chr11 121263267 121263511 -580345 - RMER16-int LTR ERVK -4912 494 312 6 1510 913 152 4 177 chr11 121263599 121263870 -579986 - MMERVK10C-int LTR ERVK -6629 952 729 6 1510 2875 52 0 0 chr11 121263868 121264211 -579645 - MMERVK10C-int LTR ERVK -7238 343 1 6 1510 3685 44 5 0 chr11 121264211 121264645 -579211 - RLTR10C LTR ERVK 0 436 1 6 1510 281 336 95 22 chr11 121265058 121265195 -578661 - MLT1A0 LTR MaLR -41 324 178 6 1510 830 209 0 0 chr11 121265492 121265640 -578216 - B1_Mur4 SINE Alu -2 148 1 6 1510 334 279 111 83 chr11 121265899 121266079 -577777 - MER20 DNA MER1_type -34 185 1 6 1510 564 267 51 45 chr11 121266245 121266402 -577454 - RSINE1 SINE B4 -4 161 4 6 1510 448 206 102 8 chr11 121266408 121266535 -577321 + L1MB3 LINE L1 6011 6149 -34 6 1510 2427 148 115 4 chr11 121267050 121267511 -576345 + RLTR11A2 LTR ERVK 15 526 -1 6 1510 530 265 44 0 chr11 121267765 121267901 -575955 + B1_Mur1 SINE Alu 2 143 -6 6 1510 660 279 42 17 chr11 121267921 121267966 -575890 - L1MB3 LINE L1 -9 6174 6131 6 1510 392 215 0 12 chr11 121267966 121268046 -575810 - ID4 SINE ID -3 80 2 6 1510 660 280 77 25 chr11 121268046 121268306 -575550 - L1MB3 LINE L1 -53 6130 5817 6 1510 234 302 108 0 chr11 121268327 121268456 -575400 - L1M4 LINE L1 -457 5721 5579 6 1510 420 232 132 42 chr11 121269649 121269793 -574063 + RSINE1 SINE B4 2 158 -7 6 1510 302 316 0 0 chr11 121269830 121269906 -573950 + RMER15-int LTR ERVL 1731 1806 -3193 6 1510 531 261 32 48 chr11 121270052 121270192 -573664 + MTEa LTR MaLR 186 328 -51 6 1510 197 83 0 27 chr11 121270192 121270229 -573627 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 1510 531 261 32 48 chr11 121270229 121270277 -573579 + MTEa LTR MaLR 329 371 -8 6 1510 207 0 0 0 chr11 121270446 121270469 -573387 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 1510 298 117 17 0 chr11 121270471 121270531 -573325 - B2_Mm1a SINE B2 -6 187 127 6 1510 1304 85 17 6 chr11 121270567 121270744 -573112 - B2_Mm2 SINE B2 -15 180 2 6 1510 214 0 85 21 chr11 121270749 121270796 -573060 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 6 1510 216 0 0 0 chr11 121270889 121270913 -572943 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1510 1407 259 121 2 chr11 121270921 121271342 -572514 + RMER15-int LTR ERVL 4159 4629 -370 6 1510 450 238 102 27 chr11 121271426 121271612 -572244 + RMER21B LTR ERV1 292 491 -351 6 1510 350 270 35 47 chr11 121271628 121271799 -572057 - RLTR15 LTR ERVK -15 344 176 6 1510 436 208 44 69 chr11 121271816 121271976 -571880 - RLTR15 LTR ERVK -154 205 50 6 1510 204 97 0 0 chr11 121271982 121272013 -571843 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1510 1001 257 39 106 chr11 121272215 121272602 -571254 + RMER15-int LTR ERVL 4623 4983 -16 6 1510 828 161 0 0 chr11 121272697 121272827 -571029 - Lx LINE L1 -373 6281 6152 6 1510 448 226 44 39 chr11 121272827 121273007 -570849 + Lx7 LINE L1 7516 7696 0 6 1510 1288 143 58 0 chr11 121273183 121273407 -570449 + RMER20A LTR ERVK 171 407 -109 6 1510 503 292 12 64 chr11 121273853 121274025 -569831 + RSINE1 SINE B4 3 165 0 6 1510 526 255 72 47 chr11 121274055 121274248 -569608 + B3A SINE B2 1 198 0 6 1510 926 156 0 33 chr11 121274338 121274490 -569366 + B1_Mur3 SINE Alu 1 147 -2 6 1510 381 43 0 0 chr11 121274520 121274567 -569289 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1510 270 0 0 0 chr11 121274567 121274596 -569260 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1510 856 129 20 41 chr11 121274596 121274742 -569114 - B1_Mur3 SINE Alu -5 144 2 6 1510 309 259 176 0 chr11 121274879 121274964 -568892 + RSINE1 SINE B4 1 100 -65 6 1510 366 262 29 93 chr11 121275319 121275458 -568398 + B3A SINE B2 53 182 -16 6 1510 1188 57 0 0 chr11 121275541 121275699 -568157 + B2_Mm2 SINE B2 1 158 -37 6 1510 248 70 23 0 chr11 121275812 121275855 -568001 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 6 1510 529 162 61 0 chr11 121277138 121277237 -566619 + B1_Mus2 SINE Alu 40 144 -3 6 1510 305 250 81 35 chr11 121277371 121277458 -566398 - B3 SINE B2 -125 91 1 6 1510 716 310 70 39 chr11 121277557 121277910 -565946 - MLT1A LTR MaLR 0 390 2 6 1510 1339 82 33 0 chr11 121277979 121278162 -565694 + B2_Mm1t SINE B2 1 189 -4 6 1510 1147 173 13 80 chr11 121278205 121278242 -565614 + B3 SINE B2 6 36 -180 6 1510 1365 95 11 5 chr11 121278242 121278433 -565423 + B2_Mm1t SINE B2 2 193 0 6 1510 1147 173 13 80 chr11 121278433 121278621 -565235 + B3 SINE B2 37 216 0 6 1510 268 337 97 11 chr11 121278640 121278733 -565123 - B1F SINE Alu -31 118 18 6 1510 861 222 53 43 chr11 121279160 121279367 -564489 - B3 SINE B2 -7 209 1 6 1510 277 240 117 58 chr11 121279422 121279559 -564297 - L1MEg LINE L1 -5915 169 25 6 1510 206 270 107 13 chr11 121279610 121279685 -564171 - L2a LINE L2 0 3426 3345 6 1510 1974 124 113 20 chr11 121279732 121280085 -563771 - ORR1B1 LTR MaLR -8 386 1 6 1510 463 216 34 0 chr11 121280116 121280204 -563652 + PB1D7 SINE Alu 20 110 -10 6 1510 362 321 211 28 chr11 121280257 121280504 -563352 + MLT2C1 LTR ERVL 87 378 -19 6 1510 782 233 122 48 chr11 121280853 121281124 -562732 - RMER21B LTR ERV1 -275 567 277 6 1510 1243 186 22 82 chr11 121281204 121281271 -562585 - RLTR18B LTR ERVK -6 506 454 6 1510 217 0 61 0 chr11 121281271 121281304 -562552 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1510 1092 60 8 0 chr11 121281305 121281438 -562418 - B1_Mus1 SINE Alu -12 136 3 6 1510 1243 186 22 82 chr11 121281438 121281637 -562219 - RLTR18B LTR ERVK -59 453 254 6 1510 1019 149 199 9 chr11 121282100 121282316 -561540 - RLTR18B LTR ERVK -255 257 1 6 1510 289 276 67 22 chr11 121283559 121283648 -560208 - PB1D7 SINE Alu -27 93 1 6 1510 233 333 55 11 chr11 121283570 121283661 -560195 - B4A SINE B4 -125 167 73 6 1510 325 267 30 87 chr11 121283835 121283975 -559881 - ID4_ SINE ID -22 130 5 6 1510 207 225 0 0 chr11 121284026 121284066 -559790 + T-rich Low_complexity Low_complexity 1 40 0 6 1510 415 210 16 7 chr11 121284074 121284164 -559692 - PB1D9 SINE Alu -1 148 48 6 1510 361 240 65 50 chr11 121284181 121284303 -559553 - PB1D7 SINE Alu -1 119 1 6 1510 786 217 39 17 chr11 121284351 121284529 -559327 - B3A SINE B2 -16 182 1 6 1510 406 235 30 30 chr11 121285244 121285345 -558511 - MIR SINE MIR -118 144 44 6 1510 507 157 0 12 chr11 121285470 121285554 -558302 + PB1D10 SINE Alu 33 115 -2 6 1510 791 162 14 14 chr11 121285689 121285827 -558029 - B1_Mus1 SINE Alu -8 140 3 6 1510 628 170 36 0 chr11 121285880 121285992 -557864 + B1_Mur2 SINE Alu 34 149 0 6 1510 189 0 0 0 chr11 121286692 121286713 -557143 + (TCC)n Simple_repeat Simple_repeat 1 21 0 6 1510 635 256 80 25 chr11 121288453 121288475 -555381 - B3 SINE B2 0 216 193 6 1510 788 188 22 0 chr11 121288475 121288613 -555243 - B1_Mur1 SINE Alu -8 141 1 6 1510 723 239 110 11 chr11 121288613 121288640 -555216 - B3A SINE B2 -24 192 167 6 1510 408 55 0 0 chr11 121288640 121288695 -555161 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1510 723 224 133 0 chr11 121288695 121288844 -555012 - B3A SINE B2 -27 171 7 6 1510 393 164 0 27 chr11 121289103 121289178 -554678 + MTE2a LTR MaLR 1 73 -306 6 1510 1117 69 0 0 chr11 121289159 121289303 -554553 + B1_Mur3 SINE Alu 6 149 0 6 1510 419 278 359 50 chr11 121289374 121289602 -554254 + MTE2a LTR MaLR 57 403 -16 6 1510 923 214 217 41 chr11 121291344 121291689 -552167 - Lx6 LINE L1 -30 7430 7025 6 1510 581 105 0 10 chr11 121292188 121292284 -551572 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 6 1510 992 105 0 0 chr11 121292284 121292433 -551423 - B1_Mus2 SINE Alu 0 147 9 6 1510 687 189 0 63 chr11 121292292 121292450 -551406 - ID_B1 SINE B4 0 224 77 6 1510 1606 149 115 16 chr11 121292672 121292993 -550863 - ORR1B1 LTR MaLR 0 394 42 6 1510 222 37 0 0 chr11 121293043 121293070 -550786 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1510 1654 205 40 8 chr11 121293080 121293434 -550422 - ORR1D2 LTR MaLR 0 370 6 6 1510 304 292 126 40 chr11 121294638 121294813 -549043 + MLT1G LTR MaLR 205 394 -197 6 1510 263 313 175 25 chr11 121295121 121295321 -548535 + MIR SINE MIR 18 247 -15 6 1510 464 233 25 0 chr11 121296859 121296973 -546883 + PB1D10 SINE Alu 1 117 0 6 1510 225 94 0 0 chr11 121297443 121297475 -546381 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1510 373 309 78 89 chr11 121297501 121297771 -546085 - B4 SINE B4 -15 277 11 6 1510 315 188 36 36 chr11 121297847 121297930 -545926 + ID4 SINE ID 1 83 0 6 1510 277 246 46 38 chr11 121298785 121298916 -544940 + (CAGAGA)n Simple_repeat Simple_repeat 1 132 0 6 1510 404 193 9 0 chr11 121298929 121299038 -544818 + GA-rich Low_complexity Low_complexity 1 110 0 6 1510 487 243 9 0 chr11 121299109 121299216 -544640 - PB1D9 SINE Alu 0 120 13 6 1510 320 164 0 15 chr11 121299246 121299314 -544542 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1510 779 208 109 0 chr11 121299315 121299498 -544358 - B3 SINE B2 -13 203 1 6 1510 324 0 0 0 chr11 121299632 121299668 -544188 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 6 1510 1196 82 0 0 chr11 121299669 121299827 -544029 - B2_Mm2 SINE B2 -37 158 1 6 1510 1023 215 15 5 chr11 121299849 121300055 -543801 - B3 SINE B2 -8 208 1 7 1510 195 42 0 0 chr11 121300705 121300729 -543127 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1510 320 161 21 41 chr11 121300874 121300971 -542885 + GA-rich Low_complexity Low_complexity 1 95 0 7 1510 494 307 109 0 chr11 121300973 121301110 -542746 - B3A SINE B2 -45 153 2 7 1510 208 315 53 21 chr11 121301688 121301782 -542074 - L2b LINE L2 -305 3070 2974 7 1510 290 209 21 0 chr11 121301823 121301894 -541962 - L1MB5 LINE L1 -278 5900 5827 7 1510 334 295 24 89 chr11 121301896 121302019 -541837 - PB1D7 SINE Alu -5 115 1 7 1510 710 262 0 32 chr11 121302027 121302216 -541640 - B3A SINE B2 -15 183 1 7 1510 365 323 57 25 chr11 121303234 121303393 -540463 - MIRb SINE MIR -103 165 2 7 1510 425 273 8 92 chr11 121303998 121304310 -539546 - L1ME1 LINE L1 -222 5957 5680 7 1510 489 260 133 23 chr11 121304395 121304568 -539288 + B3A SINE B2 1 192 -6 7 1510 296 140 88 32 chr11 121304604 121304682 -539174 - L1MB5 LINE L1 -652 5590 5510 7 1510 184 211 148 66 chr11 121304764 121304825 -539031 + L2c LINE L2 3319 3384 -3 7 1510 789 228 0 0 chr11 121304840 121304985 -538871 - B1F2 SINE Alu -2 147 3 7 1510 261 0 0 0 chr11 121304993 121305022 -538834 + (TTA)n Simple_repeat Simple_repeat 1 29 0 7 1510 561 202 167 0 chr11 121305025 121305139 -538717 - B1_Mur4 SINE Alu -15 135 3 7 1510 228 284 153 22 chr11 121305139 121305276 -538580 - YREP_Mm Unknown Unknown -1478 334 180 7 1510 424 249 139 20 chr11 121305164 121305289 -538567 + ID_B1 SINE B4 94 221 -71 7 1510 704 278 132 19 chr11 121305289 121305495 -538361 + B4A SINE B4 5 234 -58 7 1510 729 286 66 40 chr11 121305495 121305768 -538088 + B4A SINE B4 3 282 -10 7 1510 704 278 132 19 chr11 121305768 121305818 -538038 + B4A SINE B4 235 290 -2 7 1510 309 329 93 99 chr11 121305818 121305868 -537988 + B4A SINE B4 222 272 -20 7 1510 306 0 0 0 chr11 121305882 121305916 -537940 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1510 5107 135 37 11 chr11 121306181 121307026 -536830 - RMER12 LTR ERVK -455 867 1 7 1510 364 82 16 16 chr11 121307187 121307249 -536607 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 7 1510 531 171 0 0 chr11 121307252 121307340 -536516 - B1_Mur4 SINE Alu 0 150 63 7 1510 233 184 0 26 chr11 121307306 121307345 -536511 - 4.5SRNA scRNA scRNA -4 90 53 7 1510 234 0 0 0 chr11 121307348 121307374 -536482 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1510 600 228 162 70 chr11 121307381 121307639 -536217 - RMER4B LTR ERVK -39 572 343 7 1510 276 172 0 0 chr11 121307655 121307713 -536143 + CT-rich Low_complexity Low_complexity 2 59 0 7 1510 271 181 14 14 chr11 121307952 121308025 -535831 + CT-rich Low_complexity Low_complexity 5 77 0 7 1510 778 117 235 16 chr11 121308036 121308219 -535637 - RMER4B LTR ERVK -333 252 30 7 1510 1305 97 22 0 chr11 121308244 121308429 -535427 - B2_Mm1t SINE B2 -3 190 2 7 1510 373 215 15 0 chr11 121308463 121308528 -535328 - PB1D9 SINE Alu -52 68 3 7 1510 268 299 15 0 chr11 121308470 121308537 -535319 - ID_B1 SINE B4 -82 142 75 7 1510 304 162 68 79 chr11 121308590 121308678 -535178 - PB1D10 SINE Alu -31 117 29 7 1510 243 227 15 29 chr11 121308755 121308823 -535033 - L1MEf LINE L1 -3617 2529 2463 7 1510 292 213 179 11 chr11 121308865 121308960 -534896 + PB1D10 SINE Alu 5 115 -2 7 1510 420 284 71 77 chr11 121309212 121309237 -534619 - B2_Mm1t SINE B2 -9 184 160 7 1510 357 117 0 0 chr11 121309237 121309297 -534559 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1510 768 261 19 0 chr11 121309297 121309454 -534402 - B3 SINE B2 -54 162 3 7 1510 209 184 0 0 chr11 121309487 121309525 -534331 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 7 1510 247 277 46 0 chr11 121309547 121309612 -534244 - ID4_ SINE ID -14 69 2 7 1510 362 283 40 40 chr11 121309612 121309737 -534119 - L1MEf LINE L1 -4053 2189 2065 7 1510 809 217 224 18 chr11 121309745 121309876 -533980 + ORR1C2 LTR MaLR 1 189 -195 7 1510 450 0 0 0 chr11 121309876 121309926 -533930 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 1510 809 215 194 17 chr11 121309926 121310067 -533789 + ORR1C2 LTR MaLR 190 358 -26 7 1510 195 42 0 0 chr11 121310542 121310566 -533290 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1510 1165 58 0 0 chr11 121310566 121310704 -533152 - B1_Mus1 SINE Alu -10 138 1 7 1510 1273 168 4 31 chr11 121310852 121311079 -532777 + URR1A DNA MER1_type 2 222 -4 7 1510 279 312 52 0 chr11 121312081 121312158 -531698 - RSINE1 SINE B4 -10 155 75 7 1510 1818 179 39 14 chr11 121312183 121312304 -531552 - RLTR14 LTR ERV1 -15 367 240 7 1510 360 0 0 0 chr11 121312304 121312344 -531512 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1510 1818 179 39 14 chr11 121312344 121312580 -531276 - RLTR14 LTR ERV1 -143 239 2 7 1510 1369 207 127 17 chr11 121313941 121314306 -529550 + MTD LTR MaLR 10 405 -14 7 1510 207 0 0 0 chr11 121314400 121314423 -529433 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1510 967 150 144 5 chr11 121315647 121315835 -528021 + URR1A DNA MER1_type 5 218 -8 7 1510 315 71 0 0 chr11 121315857 121315899 -527957 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1510 664 137 41 54 chr11 121315941 121316088 -527768 - RLTR12B LTR ERVK 0 528 384 7 1510 674 193 0 0 chr11 121316215 121316334 -527522 - PB1D7 SINE Alu -1 119 1 7 1510 307 169 0 34 chr11 121316337 121316407 -527449 - PB1D10 SINE Alu 0 120 53 7 1510 320 203 0 15 chr11 121316409 121316474 -527382 - L1MEg LINE L1 -4132 1952 1889 7 1510 320 274 61 88 chr11 121316487 121316635 -527221 - MIR SINE MIR -62 200 57 7 1510 312 240 0 39 chr11 121317111 121317189 -526667 - PB1D10 SINE Alu 0 117 43 7 1510 1205 41 0 27 chr11 121317269 121317418 -526438 - B1_Mm SINE Alu -1 146 2 7 1510 22 56 0 0 chr11 121317495 121317531 -526325 + AT_rich Low_complexity Low_complexity 1 36 0 7 1510 614 215 10 6 chr11 121317543 121317663 -526193 - B3A SINE B2 -77 116 2 7 1510 629 289 49 6 chr11 121317925 121318179 -525677 - L1MEf LINE L1 -429 5735 5466 7 1510 229 272 73 0 chr11 121318512 121318648 -525208 - L1MEf LINE L1 -3646 2500 2355 7 1510 366 350 32 37 chr11 121318691 121318878 -524978 - L1MEf LINE L1 -4041 2201 2016 7 1510 737 146 32 8 chr11 121318880 121319004 -524852 - B1_Mur1 SINE Alu -1 148 22 7 1510 249 292 77 22 chr11 121318939 121319030 -524826 - B4A SINE B4 -116 176 81 7 1510 972 162 58 39 chr11 121319267 121319473 -524383 - B3 SINE B2 -6 210 1 7 1510 334 259 326 0 chr11 121319494 121319641 -524215 - B3A SINE B2 0 198 4 7 1510 752 206 15 0 chr11 121319688 121319824 -524032 + B1_Mur1 SINE Alu 2 139 -10 7 1510 183 42 0 0 chr11 121319824 121319848 -524008 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1510 216 0 0 0 chr11 121319878 121319902 -523954 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1510 1427 60 33 0 chr11 121320467 121320649 -523207 + B2_Mm2 SINE B2 2 189 -6 7 1510 222 118 0 0 chr11 121321032 121321066 -522790 + (CTG)n Simple_repeat Simple_repeat 2 35 0 7 1510 881 152 0 20 chr11 121321082 121321230 -522626 - B1_Mur4 SINE Alu 0 150 6 7 1510 472 272 21 56 chr11 121322210 121322354 -521502 - B1F SINE Alu -10 139 1 7 1510 204 70 22 44 chr11 121322358 121322403 -521453 + (TTCCC)n Simple_repeat Simple_repeat 2 45 0 7 1510 454 207 164 0 chr11 121322403 121322519 -521337 - B1_Mur1 SINE Alu -13 136 2 7 1510 321 26 0 0 chr11 121323197 121323235 -520621 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1510 1532 274 87 16 chr11 121323242 121323691 -520165 - Lx8 LINE L1 -530 6943 6463 7 1510 447 283 19 9 chr11 121324290 121324397 -519459 - PB1D7 SINE Alu -7 113 6 7 1510 238 302 0 0 chr11 121324342 121324405 -519451 - B4 SINE B4 -147 145 83 7 1510 186 43 0 0 chr11 121324443 121324466 -519390 + (TTTTTA)n Simple_repeat Simple_repeat 3 25 0 7 1510 22 35 0 0 chr11 121324466 121324495 -519361 + AT_rich Low_complexity Low_complexity 1 29 0 7 1510 570 281 141 61 chr11 121324495 121324886 -518970 - Lx8 LINE L1 -4 7469 7048 7 1510 697 162 53 8 chr11 121324900 121325038 -518818 - B1_Mus2 SINE Alu 0 149 11 7 1510 190 0 32 32 chr11 121325185 121325216 -518640 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 1510 1205 48 0 0 chr11 121325216 121325354 -518502 - B1_Mus1 SINE Alu -8 140 3 7 1510 21 0 0 0 chr11 121325355 121325376 -518480 + AT_rich Low_complexity Low_complexity 1 21 0 7 1510 261 270 16 0 chr11 121325377 121325440 -518416 + ORR1E LTR MaLR 4 67 -292 7 1510 234 122 48 24 chr11 121325428 121325470 -518386 - B1_Mus1 SINE Alu -104 44 2 7 1510 1750 235 242 19 chr11 121325475 121326065 -517791 - Lx8 LINE L1 -437 7036 6315 7 1510 650 264 0 14 chr11 121326161 121326303 -517553 + B1_Mur1 SINE Alu 1 140 -9 7 1510 678 58 0 0 chr11 121326376 121326463 -517393 + (TC)n Simple_repeat Simple_repeat 2 88 0 7 1510 225 0 0 0 chr11 121326463 121326487 -517369 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1510 797 200 94 6 chr11 121326488 121326659 -517197 - B3 SINE B2 -27 189 4 7 1510 244 333 76 42 chr11 121326715 121326834 -517022 + PB1 SINE Alu 3 125 -2 7 1510 282 96 57 19 chr11 121327289 121327342 -516514 - MTEa LTR MaLR 0 379 325 7 1510 343 254 87 39 chr11 121327862 121327989 -515867 - B1F SINE Alu -16 133 1 7 1510 932 169 0 6 chr11 121327999 121328178 -515678 + CT-rich Low_complexity Low_complexity 1 178 0 7 1510 865 204 128 11 chr11 121328187 121328375 -515481 - B3 SINE B2 0 216 7 7 1510 604 201 82 86 chr11 121328440 121328696 -515160 - Lx7 LINE L1 -3 7693 7439 7 1510 5898 199 72 70 chr11 121328803 121329026 -514830 - Lx6 LINE L1 -269 7191 6971 7 1510 2626 171 51 33 chr11 121329026 121329577 -514279 - RLTR31_Mm LTR ERVK 0 561 1 7 1510 5898 199 72 70 chr11 121329577 121330822 -513034 - Lx6 LINE L1 -490 6970 5720 7 1510 2136 161 27 17 chr11 121330803 121331215 -512641 - L1_Mur3 LINE L1 -1747 4133 3718 7 1510 1331 54 11 21 chr11 121331218 121331253 -512603 - B2_Mm1a SINE B2 -5 188 156 8 1510 261 0 0 0 chr11 121331253 121331282 -512574 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 8 1510 1331 54 11 21 chr11 121331282 121331436 -512420 - B2_Mm1a SINE B2 -38 155 2 8 1510 1077 126 0 139 chr11 121331440 121331571 -512285 - L1_Mur3 LINE L1 -2301 3576 3477 7 1510 1044 99 0 7 chr11 121331571 121331713 -512143 - B1_Mus1 SINE Alu -7 141 1 8 1510 1077 126 0 139 chr11 121331713 121331811 -512045 - L1_Mur3 LINE L1 -2401 3476 3379 7 1510 2405 113 48 234 chr11 121331811 121332495 -511361 - RMER21A LTR ERV1 -316 631 75 8 1510 238 258 235 10 chr11 121332675 121332773 -511083 - B1F1 SINE Alu -19 130 11 8 1510 180 0 0 0 chr11 121333006 121333026 -510830 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 8 1510 424 146 43 33 chr11 121333029 121333121 -510735 - RLTR15 LTR ERVK -266 93 1 8 1510 901 121 0 0 chr11 121333127 121333251 -510605 + ORR1B1 LTR MaLR 271 394 0 8 1510 1515 209 42 25 chr11 121333253 121333722 -510134 - L1_Mur3 LINE L1 -7029 683 67 8 1510 1274 170 14 0 chr11 121333891 121334114 -509742 + URR1A DNA MER1_type 1 226 0 8 1510 1422 52 11 6 chr11 121335251 121335426 -508430 + B2_Mm2 SINE B2 2 177 -18 8 1510 282 116 0 0 chr11 121335426 121335469 -508387 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 8 1510 198 220 24 35 chr11 121336155 121336240 -507616 + CT-rich Low_complexity Low_complexity 4 87 0 8 1510 702 0 0 0 chr11 121336630 121336708 -507148 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1510 24 0 0 0 chr11 121338542 121338566 -505290 + AT_rich Low_complexity Low_complexity 1 24 0 8 1510 216 103 26 0 chr11 121338768 121338807 -505049 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 8 1510 603 229 74 94 chr11 121338821 121339023 -504833 + B3A SINE B2 1 198 0 8 1510 24 67 0 0 chr11 121339027 121339072 -504784 + AT_rich Low_complexity Low_complexity 1 45 0 8 1510 22 35 0 0 chr11 121339484 121339513 -504343 + AT_rich Low_complexity Low_complexity 1 29 0 8 1510 221 224 40 20 chr11 121339521 121339571 -504285 - B3 SINE B2 -164 52 2 8 1510 180 0 0 0 chr11 121339751 121339771 -504085 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1510 681 221 23 0 chr11 121339771 121339902 -503954 - B1_Mus2 SINE Alu -13 134 1 8 1510 531 231 50 0 chr11 121339911 121340032 -503824 - B1F1 SINE Alu -22 127 1 8 1510 243 0 0 0 chr11 121341893 121341920 -501936 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1510 981 98 14 27 chr11 121341953 121342100 -501756 + B1_Mus2 SINE Alu 2 146 -1 8 1510 240 274 53 27 chr11 121342171 121342246 -501610 + ID4 SINE ID 6 82 -1 8 1510 350 172 0 10 chr11 121343635 121343665 -500191 + polypurine Low_complexity Low_complexity 2 31 0 8 1510 327 49 0 0 chr11 121343665 121343706 -500150 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1510 350 172 0 10 chr11 121343706 121343775 -500081 + GA-rich Low_complexity Low_complexity 32 100 0 8 1510 191 32 65 0 chr11 121343820 121343851 -500005 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 8 1510 264 30 0 0 chr11 121343881 121343914 -499942 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1510 228 154 0 0 chr11 121343916 121343968 -499888 + (CAGA)n Simple_repeat Simple_repeat 2 53 0 8 1510 453 19 0 0 chr11 121344889 121344943 -498913 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1510 252 309 41 31 chr11 121344946 121345043 -498813 - PB1D10 SINE Alu -15 102 5 8 1510 1249 73 84 0 chr11 121346550 121346705 -497151 + B2_Mm2 SINE B2 2 163 -32 8 1510 252 0 0 0 chr11 121346705 121346733 -497123 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 8 1510 1249 73 84 0 chr11 121346733 121346755 -497101 + B2_Mm2 SINE B2 164 193 -2 8 1510 221 250 0 155 chr11 121347533 121347604 -496252 - PB1D10 SINE Alu -29 88 29 8 1510 2353 220 68 25 chr11 121348303 121348891 -494965 - Lx7 LINE L1 -278 7418 6806 8 1510 445 252 8 25 chr11 121349288 121349410 -494446 + PB1D7 SINE Alu 1 120 0 8 1510 22 0 0 0 chr11 121350214 121350236 -493620 + AT_rich Low_complexity Low_complexity 1 22 0 8 1510 2189 192 110 14 chr11 121350366 121350867 -492989 - RMER1C Other Other -8 1334 786 8 1510 465 220 75 96 chr11 121350915 121351061 -492795 - B3A SINE B2 -1 197 55 8 1510 255 284 105 63 chr11 121351161 121351304 -492552 - L1M4 LINE L1 -2245 3901 3753 8 1510 286 259 41 76 chr11 121351380 121351551 -492305 - L1M4 LINE L1 -2542 3604 3440 8 1510 844 221 30 20 chr11 121351562 121351765 -492091 - B3 SINE B2 -11 205 1 8 1510 195 42 0 0 chr11 121351922 121351946 -491910 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1510 849 115 23 0 chr11 121351950 121352080 -491776 - B1_Mus2 SINE Alu -1 146 14 8 1510 405 206 18 81 chr11 121351990 121352101 -491755 - MT2B LTR ERVL -343 258 155 8 1510 622 103 0 40 chr11 121352245 121352346 -491510 - RMER1C Other Other -1 1341 1245 8 1510 516 161 98 61 chr11 121352381 121352513 -491343 - RMER1C Other Other -51 1291 1155 8 1510 345 24 0 0 chr11 121352743 121352785 -491071 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1510 246 32 0 0 chr11 121353088 121353119 -490737 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 8 1510 245 265 0 14 chr11 121353130 121353199 -490657 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 8 1510 221 299 5 63 chr11 121354241 121354430 -489426 + CT-rich Low_complexity Low_complexity 1 178 0 8 1510 1146 62 14 0 chr11 121355548 121355693 -488163 + B1_Mus2 SINE Alu 1 147 0 8 1510 576 196 26 35 chr11 121355778 121355894 -487962 - PB1D10 SINE Alu 0 117 3 8 1510 207 100 0 0 chr11 121355896 121355926 -487930 + (CTG)n Simple_repeat Simple_repeat 2 31 0 8 1510 237 281 141 0 chr11 121355936 121356000 -487856 - ID4 SINE ID -2 81 9 8 1510 437 226 115 19 chr11 121356540 121356644 -487212 + B1F2 SINE Alu 35 148 -1 8 1510 817 168 42 7 chr11 121356672 121356816 -487040 - B1_Mur3 SINE Alu 0 149 1 8 1510 591 231 63 35 chr11 121356878 121357024 -486832 - ID_B1 SINE B4 -60 232 82 8 1510 1194 12 37 0 chr11 121357457 121357621 -486235 + (TG)n Simple_repeat Simple_repeat 2 171 0 8 1510 852 228 111 0 chr11 121359585 121359765 -484091 + B3 SINE B2 3 202 -14 8 1510 537 319 48 7 chr11 121359805 121359950 -483906 + RSINE1 SINE B4 9 159 -6 8 1510 701 124 44 9 chr11 121359988 121360102 -483754 - B1_Mur1 SINE Alu -5 144 27 8 1510 342 260 71 20 chr11 121360014 121360112 -483744 - B4 SINE B4 -88 204 102 8 1510 302 288 74 12 chr11 121360102 121360183 -483673 - B1F1 SINE Alu -63 86 1 8 1510 237 277 62 81 chr11 121360590 121360604 -483252 - YREP_Mm Unknown Unknown -1499 313 237 8 1510 816 185 7 0 chr11 121360604 121360739 -483117 + B1_Mur1 SINE Alu 14 149 0 8 1510 237 277 62 81 chr11 121360739 121360751 -483105 - YREP_Mm Unknown Unknown -1499 236 156 8 1510 265 240 206 8 chr11 121361670 121361796 -482060 + MER3 DNA MER1_type 15 165 -44 8 1510 521 200 8 87 chr11 121363307 121363433 -480423 + ID_B1 SINE B4 109 224 0 8 1510 271 278 194 0 chr11 121363931 121364003 -479853 + PB1 SINE Alu 24 109 -18 8 1510 861 120 0 0 chr11 121364026 121364159 -479697 + (TC)n Simple_repeat Simple_repeat 2 134 0 8 1510 402 74 0 0 chr11 121364163 121364217 -479639 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 8 1510 1232 126 14 14 chr11 121364569 121364779 -479077 - Lx4A LINE L1 -2 7056 6847 8 1510 232 275 87 0 chr11 121365313 121365382 -478474 - MER106B DNA MER1_type -957 102 28 8 1510 1456 142 4 4 chr11 121365665 121365891 -477965 - URR1A DNA MER1_type 0 226 1 8 1510 857 290 118 21 chr11 121365997 121366512 -477344 - L1MB7 LINE L1 -1 6784 6220 8 1510 780 225 49 209 chr11 121366532 121366858 -476998 - Lx6 LINE L1 -2 7458 7185 8 1510 314 320 84 56 chr11 121366866 121367045 -476811 - L1MB7 LINE L1 -600 6185 6002 8 1510 481 297 16 33 chr11 121367842 121367964 -475892 + ID_B1 SINE B4 104 223 -1 8 1510 286 308 62 8 chr11 121368705 121368947 -474909 - L1MB7 LINE L1 -5031 1718 1464 8 1510 1111 228 94 0 chr11 121368985 121369218 -474638 - MTEa LTR MaLR -107 272 18 8 1510 293 231 354 25 chr11 121369224 121369504 -474352 - L1MB7 LINE L1 -5174 1471 1100 8 1510 278 273 2 2 chr11 121369648 121369725 -474131 - L1MB7 LINE L1 -6406 239 174 8 1510 388 252 54 9 chr11 121369810 121369922 -473934 - LTR16B LTR ERVL -8 455 339 8 1510 232 235 29 0 chr11 121370321 121370389 -473467 - L1MB3 LINE L1 -16 6162 6093 8 1510 328 303 31 16 chr11 121370568 121370727 -473129 - L1MB3 LINE L1 -190 5990 5821 8 1510 24 0 0 0 chr11 121370969 121370993 -472863 + AT_rich Low_complexity Low_complexity 1 24 0 8 1510 195 69 0 0 chr11 121371539 121371568 -472288 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1511 423 189 27 46 chr11 121372942 121373050 -470806 + PB1D10 SINE Alu 12 125 -2 8 1511 25 0 0 0 chr11 121375960 121375985 -467871 + AT_rich Low_complexity Low_complexity 1 25 0 8 1511 270 0 0 0 chr11 121376614 121376644 -467212 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1511 252 0 0 0 chr11 121376842 121376870 -466986 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1511 294 232 73 100 chr11 121376900 121377010 -466846 + PB1D10 SINE Alu 9 115 -2 8 1511 189 246 76 15 chr11 121377550 121377616 -466240 + L3 LINE CR1 3612 3681 -808 8 1511 189 147 0 0 chr11 121377907 121377941 -465915 + (CGTG)n Simple_repeat Simple_repeat 2 35 0 8 1511 183 100 0 0 chr11 121381336 121381366 -462490 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 8 1511 624 27 0 0 chr11 121382495 121382569 -461287 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1511 852 222 113 0 chr11 121383026 121383220 -460636 + B3 SINE B2 1 216 0 8 1511 249 108 0 0 chr11 121383221 121383258 -460598 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1511 270 261 110 16 chr11 121383386 121383550 -460306 - MIR SINE MIR -8 260 67 8 1511 484 220 10 0 chr11 121385039 121385139 -458717 + RMER30 DNA MER1_type 2 102 -100 8 1511 231 303 0 83 chr11 121385144 121385252 -458604 + RMER30 DNA MER1_type 61 159 -43 8 1511 635 129 0 0 chr11 121386323 121386416 -457440 - B1_Mur3 SINE Alu -55 94 2 8 1511 322 284 0 0 chr11 121386522 121386589 -457267 - B4 SINE B4 -15 277 211 8 1511 384 255 154 47 chr11 121386576 121386745 -457111 - B2_Mm2 SINE B2 -6 189 3 8 1511 786 251 17 68 chr11 121386745 121386977 -456879 - B4 SINE B4 -62 230 11 8 1511 304 215 129 1 chr11 121387116 121387203 -456653 - L1MB7 LINE L1 -286 5898 5802 9 1511 333 248 52 37 chr11 121387390 121387524 -456332 - L1MB7 LINE L1 -705 5473 5338 9 1511 342 0 0 0 chr11 121387535 121387573 -456283 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 9 1511 318 107 0 111 chr11 121387590 121387653 -456203 - B2_Mm2 SINE B2 -93 102 47 9 1511 1188 110 29 0 chr11 121387700 121387873 -455983 - B2_Mm1t SINE B2 -14 179 2 9 1511 232 170 0 0 chr11 121388105 121388152 -455704 + T-rich Low_complexity Low_complexity 1 47 0 9 1511 1218 48 0 20 chr11 121388153 121388303 -455553 - B1_Mm SINE Alu 0 147 1 9 1511 275 279 0 0 chr11 121388316 121388377 -455479 - ID_B1 SINE B4 -64 160 100 9 1511 300 322 24 63 chr11 121388382 121388508 -455348 - L1MC LINE L1 -850 5296 5176 9 1511 899 163 14 0 chr11 121388645 121388786 -455070 + B1_Mur4 SINE Alu 1 143 -7 9 1511 411 241 110 9 chr11 121388806 121388915 -454941 + PB1D9 SINE Alu 1 120 0 9 1511 524 274 66 15 chr11 121389338 121389475 -454381 - RSINE1 SINE B4 -19 146 3 9 1511 350 287 107 68 chr11 121390040 121390403 -453453 - ORR1E LTR MaLR 0 379 13 9 1511 25 0 0 0 chr11 121390574 121390599 -453257 + AT_rich Low_complexity Low_complexity 1 25 0 9 1511 330 278 43 9 chr11 121392840 121392956 -450900 - PB1D7 SINE Alu 0 120 1 9 1511 335 319 20 46 chr11 121393201 121393352 -450504 - MLT1A0 LTR MaLR -1 364 218 9 1511 364 328 62 62 chr11 121393746 121393946 -449910 - ORR1E LTR MaLR 0 359 157 9 1511 549 0 0 0 chr11 121393946 121394007 -449849 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1511 364 328 62 62 chr11 121394007 121394063 -449793 - ORR1E LTR MaLR -203 156 103 9 1511 225 0 0 0 chr11 121394356 121394381 -449475 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1511 186 43 0 0 chr11 121395114 121395137 -448719 + (CTG)n Simple_repeat Simple_repeat 1 23 0 9 1511 432 0 0 0 chr11 121398508 121398556 -445300 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 9 1511 327 104 0 0 chr11 121398984 121399032 -444824 + (T)n Simple_repeat Simple_repeat 1 48 0 9 1511 1142 62 7 0 chr11 121399032 121399177 -444679 - B1_Mus2 SINE Alu 0 147 2 9 1511 257 316 0 50 chr11 121399257 121399337 -444519 - ID4_ SINE ID -6 77 2 9 1511 1204 54 7 0 chr11 121399588 121399735 -444121 + B1_Mus1 SINE Alu 1 148 0 9 1511 657 275 54 0 chr11 121399799 121399948 -443908 + RSINE1 SINE B4 4 160 -5 9 1511 929 286 44 4 chr11 121400152 121400422 -443434 - B4A SINE B4 -10 282 2 9 1511 307 264 67 4 chr11 121400621 121400744 -443112 - L1MA4A LINE L1 -375 5928 5785 9 1511 1025 277 40 36 chr11 121400779 121401056 -442800 - B4A SINE B4 0 292 15 9 1511 478 250 8 32 chr11 121401063 121401207 -442649 - L1MA4A LINE L1 -485 5815 5657 9 1511 583 227 28 28 chr11 121401207 121401352 -442504 + B1_Mur1 SINE Alu 5 149 0 9 1511 445 268 5 144 chr11 121401352 121401429 -442427 - L1MA4A LINE L1 -224 5656 5595 9 1511 465 84 0 0 chr11 121401491 121401562 -442294 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 1511 207 244 0 0 chr11 121403396 121403441 -440415 + C-rich Low_complexity Low_complexity 1 45 0 9 1511 458 244 169 16 chr11 121407281 121407464 -436392 + B3 SINE B2 2 212 -4 9 1511 710 159 29 36 chr11 121407517 121407654 -436202 + B1_Mur4 SINE Alu 5 140 -10 9 1511 459 261 78 0 chr11 121407799 121407914 -435942 + B1F SINE Alu 13 136 -13 9 1511 985 49 0 0 chr11 121407896 121408019 -435837 - B1_Mus2 SINE Alu -24 123 1 9 1511 304 252 0 16 chr11 121407912 121408037 -435819 - ORR1B1-int LTR MaLR -755 754 632 9 1511 186 43 0 0 chr11 121408987 121409010 -434846 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1511 439 200 83 112 chr11 121409339 121409508 -434348 - RSINE1 SINE B4 0 165 2 9 1511 197 86 0 54 chr11 121409525 121409562 -434294 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 9 1511 3326 29 31 0 chr11 121409957 121410341 -433515 + MTA_Mm LTR MaLR 1 396 0 9 1511 952 189 138 23 chr11 121411234 121411494 -432362 - B4 SINE B4 -1 291 2 9 1511 290 298 176 3 chr11 121413037 121413333 -430523 - L1M4 LINE L1 -2359 3787 3441 9 1511 285 85 43 0 chr11 121415305 121415352 -428504 + RMER4A LTR ERVK 2 50 -416 9 1511 831 44 0 12 chr11 121415337 121415453 -428403 - B2_Mm1t SINE B2 -104 112 1 9 1511 589 71 0 0 chr11 121415453 121415528 -428328 + B2_Mm1a SINE B2 118 192 -1 9 1511 2418 147 29 60 chr11 121415525 121415973 -427883 + RMER4A LTR ERVK 33 466 0 9 1511 384 262 136 44 chr11 121415984 121416434 -427422 - L1MD LINE L1 -670 5689 5222 9 1511 735 175 66 0 chr11 121416772 121416909 -426947 + B1_Mus1 SINE Alu 2 147 -1 9 1511 297 0 0 0 chr11 121416920 121416953 -426903 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1511 243 0 0 0 chr11 121416953 121416979 -426877 + (GA)n Simple_repeat Simple_repeat 2 28 0 9 1511 800 214 99 0 chr11 121416992 121417184 -426672 + B3 SINE B2 1 211 -5 9 1511 1081 204 9 18 chr11 121418840 121419060 -424796 + URR1B DNA MER1_type 5 222 -3 9 1511 1856 170 102 0 chr11 121419200 121419553 -424303 - ORR1B1 LTR MaLR 0 394 6 9 1511 1180 89 0 0 chr11 121420669 121420827 -423029 + B2_Mm2 SINE B2 1 158 -37 9 1511 186 43 0 0 chr11 121420828 121420851 -423005 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 9 1511 1396 77 28 0 chr11 121423187 121423369 -420487 + B2_Mm1t SINE B2 1 187 -6 9 1511 2464 151 42 2 chr11 121423684 121424089 -419767 + MTC LTR MaLR 1 421 0 9 1511 1270 34 0 7 chr11 121424939 121425087 -418769 - B1_Mm SINE Alu 0 147 1 9 1511 762 279 23 23 chr11 121425417 121425593 -418263 + B3A SINE B2 3 178 -20 9 1511 231 383 0 9 chr11 121425619 121425735 -418121 + Lx8 LINE L1 778 892 -6716 9 1511 238 321 114 18 chr11 121425707 121425821 -418035 + L1_Rod LINE L1 71 195 -6977 9 1511 4879 233 66 91 chr11 121426040 121426521 -417335 + Lx8 LINE L1 995 1437 -4410 9 1511 817 196 14 0 chr11 121426521 121426664 -417192 - B1_Mur4 SINE Alu -3 147 3 9 1511 4879 231 76 81 chr11 121426664 121427235 -416621 + Lx8 LINE L1 1438 1993 -3854 9 1511 1204 48 7 0 chr11 121427235 121427381 -416475 + B1_Mus1 SINE Alu 2 148 0 9 1511 4879 231 76 81 chr11 121427381 121427551 -416305 + Lx8 LINE L1 1994 2155 -3692 9 1511 3053 51 3 0 chr11 121427551 121427922 -415934 - L1_Mus1 LINE L1 0 6567 6196 9 1511 4879 231 76 81 chr11 121427922 121428861 -414995 + Lx8 LINE L1 2156 3120 -2727 9 1511 1056 143 0 0 chr11 121428890 121429044 -414812 + B2_Mm2 SINE B2 3 156 -39 9 1511 321 148 0 36 chr11 121429054 121429121 -414735 + B2_Mm2 SINE B2 47 109 -107 9 1511 255 38 94 0 chr11 121429110 121429163 -414693 + B2_Mm2 SINE B2 137 194 -1 9 1511 683 296 5 51 chr11 121429681 121429898 -413958 - B3 SINE B2 -7 209 3 9 1511 6936 239 69 104 chr11 121429999 121430495 -413361 + Lx8 LINE L1 3129 3554 -2293 9 1511 595 200 8 42 chr11 121430495 121430615 -413241 - B3 SINE B2 -100 116 1 9 1511 6936 239 69 104 chr11 121430615 121430826 -413030 + Lx8 LINE L1 3555 3736 -2111 9 1511 546 57 0 0 chr11 121430826 121430896 -412960 + (CA)n Simple_repeat Simple_repeat 2 71 0 9 1511 6936 249 77 94 chr11 121430896 121433232 -410624 + Lx8 LINE L1 3737 6252 -1221 9 1511 1274 198 168 6 chr11 121433232 121433547 -410309 - ORR1D2 LTR MaLR 0 370 5 9 1511 1912 308 123 38 chr11 121433547 121433984 -409872 + Lx8 LINE L1 6253 6745 -728 9 1511 1239 283 59 34 chr11 121433989 121434428 -409428 + Lx9 LINE L1 7012 7461 -183 9 1511 697 196 60 0 chr11 121434581 121434714 -409142 + B1_Mur1 SINE Alu 1 141 -8 9 1511 291 313 35 9 chr11 121434882 121434998 -408858 - L1M5 LINE L1 -539 5623 5505 9 1511 1231 98 55 0 chr11 121436076 121436259 -407597 - B2_Mm2 SINE B2 -1 194 2 9 1511 337 284 213 0 chr11 121436261 121436416 -407440 - MER58C DNA MER1_type -12 203 16 9 1511 454 261 36 0 chr11 121436421 121436559 -407297 - L1MB3 LINE L1 -329 5854 5712 9 1511 417 312 30 54 chr11 121437877 121438043 -405813 - B4A SINE B4 -130 162 1 9 1511 509 185 244 0 chr11 121438075 121438194 -405662 + B1_Mus1 SINE Alu 1 148 0 9 1511 500 111 0 11 chr11 121439310 121439401 -404455 + (TG)n Simple_repeat Simple_repeat 1 90 0 9 1511 23 0 0 0 chr11 121439460 121439483 -404373 + AT_rich Low_complexity Low_complexity 1 23 0 9 1511 859 221 71 15 chr11 121439483 121439681 -404175 + B3 SINE B2 1 209 -7 9 1511 804 157 59 7 chr11 121439750 121439885 -403971 - RSINE1 SINE B4 -22 143 2 9 1511 920 73 0 8 chr11 121440600 121440724 -403132 - B1_Mm SINE Alu 0 147 25 9 1511 435 38 0 0 chr11 121441572 121441625 -402231 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1511 479 287 47 47 chr11 121441627 121441755 -402101 - RSINE1 SINE B4 -18 147 20 9 1511 293 232 108 38 chr11 121442031 121442188 -401668 - L1ME1 LINE L1 -214 5965 5798 9 1511 673 254 86 0 chr11 121442218 121442415 -401441 - B3 SINE B2 0 216 3 9 1511 192 143 0 0 chr11 121442431 121442473 -401383 + (TTC)n Simple_repeat Simple_repeat 3 44 0 9 1511 859 165 11 0 chr11 121442499 121442675 -401181 + CT-rich Low_complexity Low_complexity 3 180 0 9 1511 227 233 47 62 chr11 121442697 121442761 -401095 - ID_B1 SINE B4 -78 146 84 9 1511 1116 226 5 5 chr11 121443296 121443509 -400347 + B3 SINE B2 1 213 -3 9 1511 13208 151 49 111 chr11 121444521 121446586 -397270 - Lx5 LINE L1 -628 6422 4681 9 1511 1596 47 5 0 chr11 121446586 121446778 -397078 - B2_Mm1a SINE B2 0 193 1 9 1511 13208 145 54 140 chr11 121446778 121448740 -395116 - Lx5 LINE L1 -1197 4680 2689 9 1511 261 0 0 0 chr11 121448745 121448774 -395082 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1511 966 86 78 0 chr11 121448774 121448902 -394954 - B1_Mus1 SINE Alu -9 139 2 9 1511 1450 78 5 5 chr11 121448965 121449157 -394699 + B2_Mm2 SINE B2 3 194 -1 9 1511 472 161 23 0 chr11 121450786 121450873 -392983 + RLTR16 LTR ERVK 61 149 -356 9 1511 1071 103 21 0 chr11 121450881 121451026 -392830 - B1_Mus1 SINE Alu 0 148 1 9 1511 356 217 0 0 chr11 121451028 121451097 -392759 - RLTR16 LTR ERVK -436 69 1 9 1511 579 272 55 114 chr11 121451097 121451316 -392540 - MTEa LTR MaLR -94 285 80 9 1511 208 243 0 14 chr11 121452630 121452701 -391155 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 1 1511 188 216 0 19 chr11 121454539 121454591 -389265 + C-rich Low_complexity Low_complexity 2 52 0 1 1511 384 261 53 5 chr11 121454591 121454753 -389103 - B4A SINE B4 -47 245 1 1 1511 522 181 111 8 chr11 121454793 121454910 -388946 - B3 SINE B2 -5 211 83 1 1511 814 196 5 91 chr11 121456905 121457113 -386743 + B2_Mm2 SINE B2 1 190 -5 1 1511 352 327 5 182 chr11 121457123 121457321 -386535 + RSINE1 SINE B4 3 165 0 1 1511 257 278 121 20 chr11 121457613 121457712 -386144 + PB1D10 SINE Alu 1 109 -8 1 1511 261 75 0 0 chr11 121458142 121458182 -385674 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 1511 305 273 113 8 chr11 121459312 121459445 -384411 - L1MEf LINE L1 -5137 1063 917 1 1511 912 267 91 11 chr11 121459999 121460264 -383592 - RMER15 LTR ERVL -16 559 274 1 1511 371 188 41 20 chr11 121460636 121460734 -383122 - Lx9 LINE L1 -27 7617 7518 1 1511 1046 164 161 22 chr11 121460759 121460989 -382867 - Lx9 LINE L1 -285 7359 7098 1 1511 1250 153 40 0 chr11 121461008 121461230 -382626 - Lx9 LINE L1 -644 7000 6770 1 1511 2047 197 26 3 chr11 121461290 121461681 -382175 + Lx9 LINE L1 6369 6768 -876 1 1511 1482 159 279 9 chr11 121463885 121464215 -379641 + MTD LTR MaLR 1 419 0 1 1511 219 69 0 0 chr11 121466426 121466455 -377401 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1511 406 313 105 58 chr11 121468084 121468379 -375477 - L1MEe LINE L1 -3821 1033 725 1 1511 868 176 108 71 chr11 121468440 121468687 -375169 - RMER10A LTR ERVL 0 442 181 1 1511 3428 43 2 0 chr11 121468687 121469082 -374774 - MTA_Mm LTR MaLR 0 396 1 1 1511 868 144 36 7 chr11 121469082 121469161 -374695 - RMER10A LTR ERVL -262 180 65 1 1511 541 233 37 80 chr11 121472482 121472645 -371211 - B3A SINE B2 -16 182 27 1 1511 3336 21 39 0 chr11 121473264 121473645 -370211 - MTA_Mm LTR MaLR 0 396 1 1 1511 9342 31 3 2 chr11 121473647 121474742 -369114 - MTA_Mm-int LTR MaLR -2 1096 1 1 1511 3336 21 39 0 chr11 121474742 121475123 -368733 - MTA_Mm LTR MaLR 0 396 1 1 1511 404 143 25 25 chr11 121475558 121475658 -368198 - MTD LTR MaLR -232 175 1 1 1511 1532 184 119 0 chr11 121476273 121476600 -367256 - ORR1D1 LTR MaLR -8 366 1 1 1511 337 283 153 25 chr11 121477499 121477662 -366194 - L1MEg LINE L1 -4019 2065 1882 1 1511 242 267 93 0 chr11 121480128 121480203 -363653 + B1_Mm SINE Alu 14 95 -52 1 1511 383 288 127 40 chr11 121480304 121480545 -363311 + ORR1D2 LTR MaLR 3 255 -104 1 1511 23 0 0 0 chr11 121480706 121480729 -363127 + AT_rich Low_complexity Low_complexity 1 23 0 1 1511 656 327 19 9 chr11 121482821 121483034 -360822 + B4A SINE B4 27 241 -51 1 1511 1005 251 104 4 chr11 121485864 121486124 -357732 - B4A SINE B4 -6 286 1 1 1511 240 151 130 19 chr11 121489774 121489828 -354028 + MLT1A LTR MaLR 38 97 -277 1 1511 234 325 49 66 chr11 121491392 121491514 -352342 + PB1D9 SINE Alu 1 120 0 1 1511 298 264 199 46 chr11 121492498 121492867 -350989 + L1M3 LINE L1 3389 3816 -2330 1 1511 245 254 0 35 chr11 121493412 121493469 -350387 + PB1D9 SINE Alu 2 56 -64 1 1511 581 282 21 7 chr11 121493532 121493675 -350181 + RSINE1 SINE B4 17 161 -4 1 1511 394 234 41 41 chr11 121493727 121493825 -350031 + PB1D10 SINE Alu 18 115 -2 1 1511 1750 164 56 28 chr11 121494152 121494509 -349347 - ORR1B2 LTR MaLR 0 367 1 1 1511 216 0 0 0 chr11 121494621 121494645 -349211 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1511 835 174 43 0 chr11 121495099 121495237 -348619 - B1_Mur2 SINE Alu 0 149 6 1 1511 264 250 32 97 chr11 121495157 121495250 -348606 - MT2B LTR ERVL -361 240 154 1 1511 962 216 50 0 chr11 121495257 121495456 -348400 - B3 SINE B2 -7 209 1 1 1511 1110 72 33 0 chr11 121495491 121495643 -348213 - ORR1A2 LTR MaLR -170 157 1 1 1511 360 321 121 26 chr11 121495658 121495975 -347881 - L1_Rod LINE L1 -1875 4268 3894 1 1511 281 109 0 18 chr11 121497163 121497219 -346637 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1511 332 320 133 46 chr11 121497315 121497662 -346194 + L1M3 LINE L1 5274 5650 -530 1 1511 7539 71 21 13 chr11 121498478 121499814 -344042 - L1_Mus3 LINE L1 -1 6637 5299 1 1511 710 135 18 9 chr11 121499814 121499926 -343930 - PB1D9 SINE Alu -7 113 1 1 1511 4238 103 1 32 chr11 121499926 121499985 -343871 - L1_Mus3 LINE L1 -585 5298 5244 1 1511 947 145 0 24 chr11 121500000 121500170 -343686 - L1_Mm LINE L1 -689 5194 5029 1 1511 2267 119 0 0 chr11 121500225 121500560 -343296 - L1_Mur2 LINE L1 -2033 3844 3510 2 1511 399 243 140 0 chr11 121500737 121500844 -343012 + B1_Mur2 SINE Alu 6 127 -22 3 1511 348 274 153 0 chr11 121501291 121501415 -342441 + ORR1D2 LTR MaLR 228 370 0 4 1511 504 0 0 0 chr11 121502582 121502638 -341218 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1511 228 67 0 0 chr11 121502638 121502667 -341189 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1512 243 0 0 0 chr11 121504212 121504239 -339617 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1512 545 76 0 12 chr11 121504560 121504640 -339216 + (AGGGGG)n Simple_repeat Simple_repeat 2 80 0 8 1512 186 183 123 27 chr11 121505079 121505152 -338704 + L3 LINE CR1 2534 2613 -1876 9 1512 779 176 0 40 chr11 121505607 121505755 -338101 + B1_Mur3 SINE Alu 2 143 -6 1 1512 207 0 0 0 chr11 121505759 121505782 -338074 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1512 1305 14 7 0 chr11 121507077 121507224 -336632 + B1_Mus1 SINE Alu 1 148 0 1 1512 294 95 0 0 chr11 121507227 121507269 -336587 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1512 392 232 186 14 chr11 121507559 121507699 -336157 + ERVL-int LTR ERVL 5326 5489 -268 1 1512 457 181 148 24 chr11 121507888 121508024 -335832 + MLT2B2 LTR ERVL 1 148 -266 1 1512 522 259 73 25 chr11 121508928 121509085 -334771 + B3A SINE B2 1 154 -39 1 1512 324 48 0 0 chr11 121509085 121509127 -334729 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1512 217 321 34 121 chr11 121509127 121509145 -334711 + B2_Mm1t SINE B2 155 173 -20 1 1512 439 367 89 8 chr11 121510146 121510404 -333452 - MER21B LTR ERV1 -320 543 265 1 1512 4370 22 2 0 chr11 121510586 121511078 -332778 - MT2_Mm LTR ERVL 0 493 1 1 1512 873 143 7 21 chr11 121512300 121512443 -331413 + B1_Mur3 SINE Alu 8 148 -1 2 1512 252 0 0 0 chr11 121512445 121512473 -331383 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1512 181 216 75 38 chr11 121514108 121514161 -329695 - L2b LINE L2 -187 3188 3134 2 1512 369 0 0 0 chr11 121514338 121514379 -329477 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1512 707 269 148 18 chr11 121515828 121516051 -327805 - B4 SINE B4 -38 254 3 2 1512 846 119 214 0 chr11 121516335 121516494 -327362 + B2_Mm2 SINE B2 2 194 -1 2 1512 225 154 0 0 chr11 121516825 121516864 -326992 + CT-rich Low_complexity Low_complexity 3 41 0 2 1512 1374 209 101 69 chr11 121517105 121517511 -326345 + MTD LTR MaLR 1 419 0 2 1512 266 368 71 19 chr11 121517536 121517691 -326165 + MER5B DNA MER1_type 1 163 -15 2 1512 412 278 45 19 chr11 121517728 121517882 -325974 + RSINE1 SINE B4 5 162 -3 2 1512 25 31 0 0 chr11 121517897 121517929 -325927 + AT_rich Low_complexity Low_complexity 1 32 0 3 1512 1205 48 14 0 chr11 121517998 121518143 -325713 - B1_Mus2 SINE Alu 0 147 1 3 1512 954 244 66 39 chr11 121519131 121519463 -324393 - RLTR15 LTR ERVK -18 341 1 3 1512 199 157 19 19 chr11 121519821 121519873 -323983 + GA-rich Low_complexity Low_complexity 1 52 0 3 1512 354 254 42 7 chr11 121519967 121520098 -323758 + L1MEc LINE L1 1726 1853 -4562 3 1512 316 310 89 10 chr11 121520284 121520385 -323471 + L1MEc LINE L1 2079 2187 -4213 3 1512 544 255 134 23 chr11 121520417 121520634 -323222 + L1M4b LINE L1 20 260 -7074 3 1512 608 208 470 9 chr11 121520691 121520913 -322943 - MTC-int LTR MaLR -1 1257 934 3 1512 2250 136 50 0 chr11 121521073 121521433 -322423 - ORR1C1 LTR MaLR 0 378 1 3 1512 207 0 0 0 chr11 121521531 121521554 -322302 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1512 307 320 10 0 chr11 121521600 121521703 -322153 + L1M4b LINE L1 948 1051 -6283 3 1512 188 35 35 0 chr11 121521709 121521738 -322118 + (CAA)n Simple_repeat Simple_repeat 2 31 0 3 1512 433 317 97 19 chr11 121522681 121523112 -320744 + L1M4b LINE L1 1362 1826 -5508 3 1512 438 300 83 37 chr11 121523141 121523359 -320497 + L1M4b LINE L1 1905 2132 -5202 3 1512 227 324 130 0 chr11 121523361 121523469 -320387 - MT2A LTR ERVL -2 531 410 4 1512 288 319 120 8 chr11 121523507 121523624 -320232 - RMER15 LTR ERVL -40 535 406 4 1512 793 249 233 52 chr11 121523910 121524219 -319637 - MT2A LTR ERVL -109 424 60 4 1512 1483 251 56 18 chr11 121524219 121524609 -319247 - MTD LTR MaLR -14 405 1 4 1512 466 216 78 17 chr11 121524629 121524808 -319048 + L1M4b LINE L1 2270 2478 -4624 3 1512 331 227 0 39 chr11 121524862 121524940 -318916 + L1M4b LINE L1 2549 2623 -4711 3 1512 231 337 0 140 chr11 121525945 121526045 -317811 + B4A SINE B4 82 167 -125 4 1512 314 238 0 0 chr11 121526057 121526120 -317736 + RSINE1 SINE B4 88 150 -15 4 1512 1270 98 11 6 chr11 121526142 121526316 -317540 + B2_Mm1t SINE B2 2 176 -17 4 1512 903 282 10 0 chr11 121526420 121526622 -317234 + B3 SINE B2 8 211 -5 4 1512 252 251 251 18 chr11 121526640 121526863 -316993 + L1MB5 LINE L1 1630 1904 -4480 4 1512 311 214 259 28 chr11 121526912 121527225 -316631 + L1MB5 LINE L1 2025 2432 -3952 4 1512 990 128 7 0 chr11 121527248 121527397 -316459 - B1_Mur4 SINE Alu 0 150 1 4 1512 31 92 0 0 chr11 121527427 121527514 -316342 + AT_rich Low_complexity Low_complexity 1 87 0 4 1512 239 0 32 0 chr11 121527776 121527807 -316049 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1512 1272 34 0 0 chr11 121527817 121527963 -315893 - B1_Mus2 SINE Alu 0 147 2 5 1512 239 156 141 0 chr11 121527980 121528044 -315812 + L1M2 LINE L1 2741 2813 -3330 5 1512 456 250 30 10 chr11 121528072 121528173 -315683 + PB1D10 SINE Alu 15 117 0 5 1512 285 249 43 72 chr11 121528213 121528421 -315435 + L1MB5 LINE L1 2484 2685 -3697 4 1512 562 241 103 32 chr11 121528565 121528835 -315021 + L1MB5 LINE L1 3680 3980 -2402 4 1512 403 243 103 0 chr11 121528835 121528942 -314914 + PB1D7 SINE Alu 1 118 -2 5 1512 732 316 95 27 chr11 121528953 121529138 -314718 + B4A SINE B4 2 207 -85 5 1512 3251 74 2 2 chr11 121529138 121529545 -314311 - MTB_Mm LTR MaLR 0 407 1 5 1512 732 316 95 27 chr11 121529545 121529580 -314276 + B4A SINE B4 208 237 -55 5 1512 237 33 0 0 chr11 121529585 121529615 -314241 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1512 367 288 87 17 chr11 121529841 121530014 -313842 + L1MB5 LINE L1 4965 5149 -1227 4 1512 898 142 45 0 chr11 121530020 121530154 -313702 + B1_Mus2 SINE Alu 6 145 -2 5 1512 795 266 35 10 chr11 121530196 121530397 -313459 + B3 SINE B2 3 208 -8 5 1512 232 222 22 0 chr11 121530409 121530454 -313402 + B1F2 SINE Alu 42 87 -62 6 1512 198 0 0 0 chr11 121530454 121530476 -313380 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1512 231 61 0 0 chr11 121530476 121530509 -313347 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1512 1199 244 101 47 chr11 121530646 121531495 -312361 + L1MB5 LINE L1 5209 6091 -319 4 1512 827 245 69 37 chr11 121531587 121531833 -312023 - MLT1A0 LTR MaLR -97 268 15 6 1512 286 149 0 6 chr11 121531887 121531934 -311922 + B1_Mm SINE Alu 40 86 -62 6 1512 393 22 0 0 chr11 121531934 121531980 -311876 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1512 252 256 0 75 chr11 121531980 121532025 -311831 + B1_Mus1 SINE Alu 87 125 -23 6 1512 310 254 0 0 chr11 121532771 121532830 -311026 - RSINE1 SINE B4 -95 70 12 6 1512 215 227 0 0 chr11 121533634 121533678 -310178 - ID4_ SINE ID 0 83 40 6 1512 296 313 104 22 chr11 121533764 121533898 -309958 + ID_B1 SINE B4 79 223 -1 6 1512 679 258 0 35 chr11 121535596 121535765 -308091 + RSINE1 SINE B4 3 165 0 6 1512 230 356 111 35 chr11 121535765 121535794 -308062 + B3 SINE B2 2 214 -2 7 1512 1194 194 15 0 chr11 121535848 121536054 -307802 - B3 SINE B2 -6 210 2 7 1512 270 0 0 0 chr11 121536077 121536107 -307749 + (TTA)n Simple_repeat Simple_repeat 2 31 0 7 1512 900 89 73 0 chr11 121537082 121537206 -306650 - B1_Mus1 SINE Alu -14 134 2 7 1512 929 249 45 0 chr11 121537231 121537432 -306424 - B3 SINE B2 -5 211 2 7 1512 3076 140 70 31 chr11 121537435 121537988 -305868 + RMER15 LTR ERVL 1 575 0 7 1512 540 288 59 40 chr11 121538129 121538433 -305423 - RLTR12B LTR ERVK -25 503 194 7 1512 1662 76 4 18 chr11 121538433 121538660 -305196 - L1_Mus2 LINE L1 -93 6473 6250 7 1512 400 248 55 9 chr11 121538661 121538771 -305085 - RLTR12B LTR ERVK -372 156 42 7 1512 687 264 193 14 chr11 121539095 121539375 -304481 + MLT1A0 LTR MaLR 1 330 -35 7 1512 828 175 7 0 chr11 121539382 121539519 -304337 + B1_Mus2 SINE Alu 9 146 -1 7 1512 23 0 0 0 chr11 121539912 121539935 -303921 + AT_rich Low_complexity Low_complexity 1 23 0 8 1512 337 183 0 32 chr11 121540234 121540296 -303560 + RMER15 LTR ERVL 1 60 -515 8 1512 2214 167 40 14 chr11 121540357 121540728 -303128 + MTB_Mm LTR MaLR 1 381 -26 8 1512 1959 219 31 87 chr11 121540720 121540846 -303010 + RMER15 LTR ERVL 85 194 -381 8 1512 1907 162 129 5 chr11 121540846 121541219 -302637 - MTD LTR MaLR 0 419 1 8 1512 1959 219 31 87 chr11 121541219 121541573 -302283 + RMER15 LTR ERVL 195 538 -37 8 1512 1817 218 44 54 chr11 121542243 121542651 -301205 - MTD LTR MaLR -14 405 2 8 1512 184 188 39 59 chr11 121542866 121542917 -300939 - L3 LINE CR1 -2443 2046 1997 8 1512 1556 184 26 23 chr11 121544240 121544545 -299311 + MTD LTR MaLR 106 411 -8 8 1512 251 197 91 0 chr11 121544714 121544780 -299076 + L2b LINE L2 3241 3312 -63 8 1512 626 193 18 0 chr11 121545192 121545301 -298555 + B1F SINE Alu 38 148 -1 8 1512 416 19 0 19 chr11 121545437 121545491 -298365 + (CATA)n Simple_repeat Simple_repeat 3 55 0 8 1512 567 0 0 0 chr11 121545687 121545750 -298106 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1512 297 259 35 12 chr11 121546628 121546714 -297142 - MER21B LTR ERV1 -340 523 436 9 1512 337 298 31 21 chr11 121546866 121546962 -296894 - MER21B LTR ERV1 -766 97 1 9 1512 242 241 0 81 chr11 121550615 121550701 -293155 + RMER21B LTR ERV1 80 158 -684 9 1512 1556 196 67 14 chr11 121550702 121551168 -292688 + RodERV21-int LTR ERV1 154 982 -4009 9 1512 207 0 0 0 chr11 121551215 121551238 -292618 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1512 680 276 57 29 chr11 121551469 121551727 -292129 + RLTR42-int LTR ERVK 1128 1336 -4186 9 1512 352 155 0 40 chr11 121551770 121551844 -292012 + RLTR42-int LTR ERVK 907 977 -5160 9 1512 376 275 92 28 chr11 121551885 121552027 -291829 + RLTR42-int LTR ERVK 1645 1795 -3727 9 1512 1824 220 16 43 chr11 121552047 121552488 -291368 + RodERV21-int LTR ERV1 1003 1431 -3560 9 1512 3234 203 12 35 chr11 121552486 121553139 -290717 + RodERV21-int LTR ERV1 2082 2719 -2272 9 1512 1881 141 40 3 chr11 121553865 121554163 -289693 - RLTR27 LTR ERVK 0 309 1 9 1512 180 0 0 0 chr11 121554400 121554420 -289436 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 9 1512 779 163 54 0 chr11 121555036 121555183 -288673 + RodERV21-int LTR ERV1 3725 3879 -1112 9 1512 337 314 34 54 chr11 121555181 121555329 -288527 + RLTR19-int LTR ERVK 4224 4368 -1769 9 1512 2866 169 72 4 chr11 121555544 121556054 -287802 + RodERV21-int LTR ERV1 4282 4826 -165 9 1512 521 206 0 47 chr11 121556054 121556161 -287695 + RMER4B LTR ERVK 345 446 -139 1 1512 326 267 94 9 chr11 121556298 121556404 -287452 + RMER21B LTR ERV1 93 207 -635 1 1512 666 259 115 43 chr11 121556853 121557087 -286769 + RMER21B LTR ERV1 316 566 -276 1 1512 919 120 0 8 chr11 121559425 121559559 -284297 - B1_Mus1 SINE Alu 0 148 16 1 1512 365 317 44 88 chr11 121559427 121559586 -284270 - B4 SINE B4 -69 223 72 1 1512 311 259 162 9 chr11 121561617 121561839 -282017 - L1MC2 LINE L1 -24 6320 6065 1 1512 207 0 0 0 chr11 121562667 121562690 -281166 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1512 319 336 35 28 chr11 121562858 121563002 -280854 + MER20 DNA MER1_type 50 194 -25 1 1512 200 35 35 0 chr11 121563179 121563208 -280648 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1512 189 107 0 0 chr11 121564031 121564059 -279797 + (CTG)n Simple_repeat Simple_repeat 1 28 0 1 1512 217 286 24 61 chr11 121566641 121566723 -277133 + B4 SINE B4 2 80 -212 1 1512 531 112 0 0 chr11 121566732 121566812 -277044 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1512 25 0 0 0 chr11 121567564 121567589 -276267 + AT_rich Low_complexity Low_complexity 1 25 0 1 1512 25 0 0 0 chr11 121568479 121568504 -275352 + AT_rich Low_complexity Low_complexity 1 25 0 1 1512 2218 140 57 62 chr11 121570363 121570781 -273075 + RMER4A LTR ERVK 50 465 -1 1 1512 189 0 0 0 chr11 121572607 121572628 -271228 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 1 1512 899 161 0 28 chr11 121572631 121572772 -271084 - B1_Mur2 SINE Alu -10 139 3 1 1512 186 43 0 0 chr11 121574500 121574523 -269333 + (TGGG)n Simple_repeat Simple_repeat 4 26 0 1 1512 482 319 210 19 chr11 121578169 121578488 -265368 - MLT1C LTR MaLR -18 449 70 1 1512 639 242 22 43 chr11 121578516 121578654 -265202 + B3A SINE B2 5 139 -59 1 1512 306 50 0 0 chr11 121578654 121578694 -265162 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1512 192 40 0 0 chr11 121578698 121578723 -265133 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1512 210 315 0 0 chr11 121583722 121583795 -260061 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1512 2782 99 24 143 chr11 121585663 121586202 -257654 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1512 202 311 9 28 chr11 121586816 121586922 -256934 + GA-rich Low_complexity Low_complexity 4 107 0 1 1512 391 294 28 6 chr11 121588398 121588570 -255286 - L1MD LINE L1 -2532 3614 3438 1 1512 824 293 73 108 chr11 121588761 121588838 -255018 - L1MEc LINE L1 -2928 3391 3292 1 1512 2082 197 27 12 chr11 121588838 121589250 -254606 + MTD LTR MaLR 2 419 0 1 1512 824 293 73 108 chr11 121589250 121589662 -254194 - L1MEc LINE L1 -3028 3291 2919 1 1512 250 297 122 10 chr11 121589755 121589959 -253897 - L1MEc LINE L1 -4277 2123 1897 1 1512 356 296 120 100 chr11 121590474 121590875 -252981 - MLT1C LTR MaLR -9 458 50 1 1512 229 176 115 19 chr11 121591193 121591245 -252611 - ORR1C1 LTR MaLR -60 318 262 1 1512 438 248 115 18 chr11 121591610 121591828 -252028 + MER97b DNA MER1_type? 617 855 -198 1 1512 246 362 8 8 chr11 121592127 121592244 -251612 + MLT1C LTR MaLR 349 465 -2 1 1512 2017 163 64 0 chr11 121593287 121593648 -250208 + ORR1C2 LTR MaLR 1 384 0 1 1512 240 284 55 33 chr11 121594729 121594820 -249036 + RLTR13A3 LTR ERVK 30 122 -856 1 1512 29 28 0 0 chr11 121594961 121594997 -248859 + AT_rich Low_complexity Low_complexity 1 36 0 1 1512 1205 75 0 0 chr11 121595004 121595150 -248706 + B1_Mus1 SINE Alu 2 147 -1 1 1512 369 0 0 0 chr11 121595161 121595202 -248654 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1512 291 338 122 0 chr11 121595247 121595395 -248461 - L1MB3 LINE L1 -75 6108 5943 1 1512 477 261 142 49 chr11 121595450 121595719 -248137 - ORR1E LTR MaLR 0 379 76 1 1512 537 58 0 0 chr11 121598290 121598359 -245497 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1512 425 266 145 48 chr11 121601642 121601911 -241945 + L1MC5 LINE L1 7623 7917 -44 1 1512 2304 120 12 3 chr11 121603666 121603992 -239864 - ORR1A4 LTR MaLR 0 329 1 1 1512 278 322 186 11 chr11 121605880 121606413 -237443 - L1MC3 LINE L1 -2 7783 7158 1 1512 1314 249 75 28 chr11 121609376 121609736 -234120 - MTEb LTR MaLR 0 379 3 1 1512 729 130 81 0 chr11 121610166 121610289 -233567 + Lx6 LINE L1 4024 4156 -1724 1 1512 9212 182 72 9 chr11 121610290 121612927 -230929 + Lx6 LINE L1 4645 7455 -5 1 1512 505 312 98 37 chr11 121613603 121613912 -229944 + MLT2C2 LTR ERVL 1 337 -77 1 1512 233 265 65 111 chr11 121614047 121614200 -229656 - RMER15 LTR ERVL -416 159 14 1 1512 399 277 67 14 chr11 121614290 121614581 -229275 + L1MEg LINE L1 1140 1467 -4733 1 1512 837 314 49 30 chr11 121614590 121614853 -229003 + B4A SINE B4 2 269 -23 1 1512 492 62 0 0 chr11 121615599 121615663 -228193 + (GGGGA)n Simple_repeat Simple_repeat 3 66 0 1 1512 435 325 53 0 chr11 121615700 121615851 -228005 + MER97c DNA MER1_type? 1 159 -931 1 1512 1565 217 53 32 chr11 121616443 121616852 -227004 + MTD LTR MaLR 3 405 -14 1 1512 858 219 21 5 chr11 121618494 121618682 -225174 - B3 SINE B2 -25 191 1 1 1512 539 293 136 13 chr11 121618683 121619198 -224658 - L1MD LINE L1 -572 5607 5023 1 1512 568 285 99 35 chr11 121619193 121619644 -224212 - L1MD LINE L1 -1784 4362 3885 1 1512 1155 76 0 7 chr11 121619673 121619819 -224037 - B1_Mus1 SINE Alu -3 145 1 1 1512 603 167 7 14 chr11 121619847 121619987 -223869 + CT-rich Low_complexity Low_complexity 2 140 0 1 1512 666 257 28 7 chr11 121620157 121620298 -223558 - RSINE1 SINE B4 -17 148 5 1 1512 485 230 178 23 chr11 121620361 121620619 -223237 - L1MD LINE L1 -2535 3611 3314 1 1512 239 98 0 38 chr11 121623955 121624008 -219848 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1 1512 270 39 78 0 chr11 121624622 121624673 -219183 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 1 1512 738 87 0 0 chr11 121624953 121625056 -218800 + (TCCC)n Simple_repeat Simple_repeat 2 104 0 1 1512 233 220 62 52 chr11 121625500 121625596 -218260 - L1MEd LINE L1 -1317 4829 4733 1 1512 191 125 31 0 chr11 121625613 121625645 -218211 - L2a LINE L2 -14 3412 3380 1 1512 485 216 18 0 chr11 121625781 121625892 -217964 - RCHARR1 DNA MER1_type 0 974 862 1 1512 2825 68 14 0 chr11 121625902 121626269 -217587 + Lx2 LINE L1 5637 6008 -989 1 1512 655 187 49 11 chr11 121626269 121626443 -217413 - RCHARR1 DNA MER1_type -67 907 727 1 1512 309 164 0 0 chr11 121626443 121626498 -217358 + B1_Mus2 SINE Alu 1 55 -92 1 1512 289 296 9 101 chr11 121626508 121626553 -217303 + B1_Mur1 SINE Alu 42 79 -70 1 1512 3398 43 2 0 chr11 121626553 121626952 -216904 - MTB LTR MaLR 0 400 1 1 1512 289 296 9 101 chr11 121626952 121627015 -216841 + B1_Mur1 SINE Alu 80 140 -9 1 1512 1713 266 79 17 chr11 121627050 121627635 -216221 - RCHARR1 DNA MER1_type -233 741 121 1 1512 729 168 0 0 chr11 121628030 121628261 -215595 + GA-rich Low_complexity Low_complexity 1 231 0 1 1512 528 232 7 7 chr11 121628330 121628469 -215387 - L1MEd LINE L1 -5024 1112 974 1 1512 327 78 0 0 chr11 121628875 121628926 -214930 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1512 261 290 0 0 chr11 121630045 121630114 -213742 + L1M2 LINE L1 4330 4398 -1745 1 1512 546 291 71 61 chr11 121631388 121631600 -212256 - B4A SINE B4 -78 214 1 1 1512 4149 154 17 66 chr11 121632517 121633398 -210458 + MurERV4_19-int LTR ERVK 4940 5777 -3 1 1512 3654 142 173 5 chr11 121633402 121634033 -209823 + RMER19A LTR ERVK 1 737 0 1 1512 1430 258 52 22 chr11 121634168 121634572 -209284 + MTD LTR MaLR 1 416 -3 1 23 896 149 0 26 chr11 121634697 121634849 -209007 + B1_Mur4 SINE Alu 2 149 -1 1 1513 1698 256 124 48 chr11 121635119 121636139 -207717 - L1MC1 LINE L1 -239 6269 5162 1 1513 891 260 106 25 chr11 121636131 121636777 -207079 - L1MC1 LINE L1 -3782 2539 1827 1 1513 587 161 161 0 chr11 121636844 121636956 -206900 + B1_Mur2 SINE Alu 1 130 -19 1 1513 213 39 0 0 chr11 121636963 121636989 -206867 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1513 281 235 49 39 chr11 121637019 121637121 -206735 - L1MC1 LINE L1 -4711 1797 1695 1 1513 463 196 88 0 chr11 121637239 121637341 -206515 - B3 SINE B2 -104 112 2 1 1513 310 291 65 138 chr11 121637380 121637465 -206391 - L1MC1 LINE L1 -4963 1545 1476 1 1513 1298 89 0 94 chr11 121637465 121637518 -206338 - B2_Mm2 SINE B2 -2 193 160 1 1513 279 0 0 0 chr11 121637518 121637549 -206307 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1513 1298 89 0 94 chr11 121637549 121637707 -206149 - B2_Mm2 SINE B2 -36 159 2 1 1513 310 291 65 138 chr11 121637707 121637868 -205988 - L1MC1 LINE L1 -5033 1475 1317 1 1513 474 274 25 40 chr11 121637899 121638097 -205759 - L1MC1 LINE L1 -5287 1221 1027 1 1513 657 268 39 34 chr11 121639894 121640097 -203759 + ORR1D2-int LTR MaLR 916 1208 -301 1 1513 3300 166 18 7 chr11 121640159 121640704 -203152 + Lx5 LINE L1 6221 6771 -279 1 1513 2038 71 48 19 chr11 121640706 121641022 -202834 - IAPLTR2b LTR ERVK -2 325 1 1 1513 1116 219 71 11 chr11 121641022 121641290 -202566 + Lx5 LINE L1 6766 7049 -1 1 1513 1227 180 96 15 chr11 121641299 121641570 -202286 + ORR1D2-int LTR MaLR 1076 1368 -2 1 1513 1116 230 71 71 chr11 121641569 121641906 -201950 + ORR1D2 LTR MaLR 2 338 -32 1 1513 2262 92 56 22 chr11 121643567 121643924 -199932 + Lx3B LINE L1 6602 6970 -3 1 1513 371 197 0 14 chr11 121644001 121644073 -199783 - RSINE1 SINE B4 -73 92 22 1 1513 9537 112 25 12 chr11 121644121 121645811 -198045 - Lx2B LINE L1 -3 6997 5291 1 1513 5290 138 34 0 chr11 121645816 121646674 -197182 - Lx2B LINE L1 -1490 4387 3501 1 1513 395 335 30 15 chr11 121646713 121646910 -196946 - RMER15 LTR ERVL -16 559 360 1 1513 421 378 17 13 chr11 121647205 121647438 -196418 + MLT1A LTR MaLR 118 351 -23 1 1513 692 286 121 23 chr11 121649148 121649413 -194443 - B4A SINE B4 0 292 2 1 1513 219 69 0 0 chr11 121649419 121649448 -194408 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1513 1293 248 79 11 chr11 121651393 121651748 -192108 - MTE2a LTR MaLR 0 379 1 1 1513 260 296 119 30 chr11 121651827 121651928 -191928 - MIRb SINE MIR -125 143 34 1 1513 278 153 28 0 chr11 121652451 121652523 -191333 + (TCTG)n Simple_repeat Simple_repeat 1 74 0 1 1513 312 340 56 50 chr11 121652674 121652872 -190984 - MLT1H-int LTR MaLR -1004 405 207 1 1513 216 0 0 0 chr11 121654167 121654191 -189665 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 1 1513 486 167 0 0 chr11 121654216 121654294 -189562 - B3 SINE B2 -86 130 53 1 1513 242 294 109 14 chr11 121654487 121654625 -189231 + MLT-int LTR MaLR 1476 1626 -109 1 1513 269 152 271 0 chr11 121654662 121654721 -189135 - PB1D10 SINE Alu -27 90 16 1 1513 568 319 130 37 chr11 121654864 121655326 -188530 + MLT1D LTR MaLR 1 505 0 1 1513 204 204 41 0 chr11 121655803 121655852 -188004 - L2 LINE L2 -1884 1535 1485 1 1513 360 0 0 0 chr11 121658553 121658593 -185263 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1513 1182 61 0 13 chr11 121658642 121658791 -185065 + B1_Mus2 SINE Alu 1 147 0 2 1513 395 317 18 30 chr11 121662018 121662184 -181672 + RMER1C Other Other 380 543 -799 2 1513 2683 270 120 23 chr11 121662192 121662945 -180911 + RMER1C Other Other 375 1167 -175 2 1513 441 129 0 0 chr11 121662945 121663015 -180841 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2 1513 2683 270 120 23 chr11 121663015 121663143 -180713 + RMER1C Other Other 1168 1342 0 2 1513 24 0 0 0 chr11 121663980 121664004 -179852 + AT_rich Low_complexity Low_complexity 1 24 0 2 1513 181 136 65 43 chr11 121664517 121664563 -179293 - L3 LINE CR1 -269 4220 4174 2 1513 303 49 0 0 chr11 121666760 121666801 -177055 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1513 190 315 0 0 chr11 121667345 121667399 -176457 - MIRb SINE MIR -80 188 135 2 1513 439 347 99 25 chr11 121667684 121667926 -175930 + MER21B LTR ERV1 13 272 -591 2 1513 659 281 13 25 chr11 121668819 121668976 -174880 + RSINE1 SINE B4 11 165 0 2 1513 754 151 16 16 chr11 121670655 121670783 -173073 + B3 SINE B2 3 130 -86 2 1513 26 0 0 0 chr11 121670814 121670840 -173016 + AT_rich Low_complexity Low_complexity 1 26 0 2 1513 258 32 0 0 chr11 121670956 121670987 -172869 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2 1513 467 202 0 12 chr11 121671596 121671681 -172175 + RLTR19 LTR ERVK 416 499 0 2 1513 444 156 0 0 chr11 121671681 121671757 -172099 + RMER6A LTR ERVK 679 754 -2 2 1513 284 243 14 14 chr11 121671759 121671830 -172026 - RMER1B Other Other -509 557 487 2 1513 1989 242 56 63 chr11 121671797 121672606 -171250 - RMER1B Other Other -532 534 9 2 1513 23 33 0 0 chr11 121672999 121673029 -170827 + AT_rich Low_complexity Low_complexity 1 30 0 2 1513 294 291 0 71 chr11 121673086 121673171 -170685 - ID4_ SINE ID 0 83 5 2 1513 2078 226 91 44 chr11 121674129 121674328 -169528 - RMER19C LTR ERVK 0 611 408 2 1513 3718 20 2 0 chr11 121674328 121674723 -169133 - MTA_Mm LTR MaLR 0 396 1 2 1513 2078 226 91 44 chr11 121674723 121675064 -168792 - RMER19C LTR ERVK -204 407 46 2 1513 181 268 36 0 chr11 121676534 121676590 -167266 + L2 LINE L2 2410 2467 -952 2 1513 194 280 212 26 chr11 121676658 121676889 -166967 + L2 LINE L2 2568 2841 -578 2 1513 2861 136 91 27 chr11 121677211 121677696 -166160 - RMER20A LTR ERVK 0 516 1 2 1513 1251 134 5 0 chr11 121678996 121679182 -164674 - MTC LTR MaLR -234 187 1 2 1513 4727 149 169 23 chr11 121679182 121679300 -164556 - MTC-int LTR MaLR 0 1258 1135 2 1513 1212 82 7 0 chr11 121679300 121679446 -164410 + B1_Mus1 SINE Alu 2 148 0 2 1513 4727 149 169 23 chr11 121679446 121680335 -163521 - MTC-int LTR MaLR -124 1134 104 2 1513 2068 171 54 0 chr11 121680334 121680686 -163170 - MTC LTR MaLR -50 371 1 2 1513 2767 172 31 52 chr11 121681180 121681655 -162201 - RLTR20B2 LTR ERVK 0 560 97 2 1513 4794 56 9 2 chr11 121681655 121682211 -161645 + LTRIS2 LTR ERV1 5 564 0 2 1513 2767 172 31 52 chr11 121682211 121682307 -161549 - RLTR20B2 LTR ERVK -464 96 1 2 1513 240 86 0 0 chr11 121682432 121682467 -161389 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1513 3010 182 142 9 chr11 121682760 121683131 -160725 + RLTR22_Mur LTR ERVK 452 900 -948 2 1513 3533 41 5 0 chr11 121683131 121683525 -160331 + MTA_Mm LTR MaLR 1 396 0 2 1513 3010 182 142 9 chr11 121683525 121683845 -160011 + RLTR22_Mur LTR ERVK 901 1235 -613 2 1513 181 333 72 10 chr11 121684170 121684267 -159589 + MIRm SINE MIR 45 147 -129 2 1513 2665 165 32 19 chr11 121684273 121684737 -159119 + RLTR18B LTR ERVK 37 506 -6 2 1513 442 236 53 23 chr11 121685361 121685578 -158278 + MMSAT4 Satellite Satellite 1 223 -5 2 1513 289 265 74 93 chr11 121685609 121685828 -158028 + MMSAT4 Satellite Satellite 1 214 -5 2 1513 246 311 44 36 chr11 121685863 121686000 -157856 + MMSAT4 Satellite Satellite 31 168 0 2 1513 503 233 113 0 chr11 121687265 121687398 -156458 - B1_Mur3 SINE Alu -1 148 1 2 1513 2672 160 80 15 chr11 121687438 121687864 -155992 + RLTR20B2 LTR ERVK 1 465 -95 2 1513 426 39 0 0 chr11 121687864 121687916 -155940 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1513 2672 160 80 15 chr11 121687916 121688015 -155841 + RLTR20B2 LTR ERVK 466 559 -1 2 1513 1412 98 6 0 chr11 121688400 121688583 -155273 + B2_Mm1t SINE B2 2 185 -8 2 1513 202 308 0 13 chr11 121688600 121688679 -155177 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1513 402 79 0 0 chr11 121688774 121688837 -155019 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 2 1513 310 175 17 17 chr11 121688837 121688895 -154961 - B4A SINE B4 -211 81 24 2 1513 2100 144 19 19 chr11 121690057 121690426 -153430 - RLTR11A2 LTR ERVK 0 527 159 2 1513 293 252 195 71 chr11 121690692 121690846 -153010 + RMER15 LTR ERVL 364 536 -39 2 1513 382 341 85 5 chr11 121693520 121693744 -150112 - L1MB4 LINE L1 -5 6175 5934 2 1513 1035 241 100 56 chr11 121693948 121694287 -149569 - ORR1E LTR MaLR 0 359 6 2 1513 614 211 24 8 chr11 121694366 121694490 -149366 + B3A SINE B2 11 136 -62 2 1513 1884 275 131 25 chr11 121694551 121694941 -148915 - MTE-int LTR MaLR -119 1461 1020 2 1513 1190 83 0 0 chr11 121694941 121695079 -148777 + B1_Mus2 SINE Alu 1 138 -9 2 1513 219 36 0 0 chr11 121695079 121695107 -148749 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1513 1884 277 120 32 chr11 121695112 121695385 -148471 - MTE-int LTR MaLR -561 1019 612 2 1513 24 32 0 0 chr11 121695416 121695447 -148409 + AT_rich Low_complexity Low_complexity 1 31 0 2 1513 265 103 0 0 chr11 121695447 121695486 -148370 - L1M5 LINE L1 -1000 5444 5406 2 1513 3150 113 55 25 chr11 121695471 121695521 -148335 - L1_Mur2 LINE L1 -550 5327 5282 2 1513 526 153 41 0 chr11 121695521 121695619 -148237 - Lx2 LINE L1 0 6997 6896 2 1513 3150 113 55 25 chr11 121695619 121696092 -147764 - L1_Mur2 LINE L1 -596 5281 4788 2 1513 2395 168 8 8 chr11 121696092 121696487 -147369 + Lx4B LINE L1 6661 7055 -3 2 1513 850 238 106 0 chr11 121696563 121696752 -147104 - B3 SINE B2 -4 212 4 2 1513 1056 249 57 85 chr11 121697007 121697429 -146427 - RMER15 LTR ERVL 0 575 166 2 1513 1359 97 27 0 chr11 121698216 121698402 -145454 - B2_Mm1t SINE B2 -1 192 2 2 1513 3771 214 38 42 chr11 121698965 121700448 -143408 + RMER1A Other Other 1 1029 -1 2 1513 922 217 56 50 chr11 121700710 121701049 -142807 - RLTR15 LTR ERVK -15 344 4 2 1513 3016 146 73 19 chr11 121701820 121702352 -141504 + RLTR31_Mm LTR ERVK 1 561 0 2 1513 259 247 26 0 chr11 121704525 121704602 -139254 + L1MA5 LINE L1 6222 6300 0 2 1513 5918 126 98 12 chr11 121704910 121705452 -138404 + RLTR21 LTR ERVK 1 585 -987 2 1513 3415 103 49 40 chr11 121705452 121705711 -138145 - RMER16 LTR ERVK -2 531 268 2 1513 1464 71 55 0 chr11 121705711 121705893 -137963 - B2_Mm2 SINE B2 -1 194 3 2 1513 3415 103 49 40 chr11 121705893 121706159 -137697 - RMER16 LTR ERVK -266 267 1 2 1513 5918 124 39 13 chr11 121706159 121706642 -137214 + RLTR21 LTR ERVK 586 1085 -487 2 1513 267 31 0 0 chr11 121706653 121706685 -137171 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1513 1522 169 153 0 chr11 121706700 121707014 -136842 - RLTR18 LTR ERVK -254 362 1 2 1513 25 0 0 0 chr11 121707279 121707304 -136552 + AT_rich Low_complexity Low_complexity 1 25 0 2 1513 659 232 116 45 chr11 121707307 121707506 -136350 + B3 SINE B2 4 216 0 2 1513 408 88 0 0 chr11 121707927 121707984 -135872 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1513 961 261 116 151 chr11 121708242 121708793 -135063 + MT2A LTR ERVL 1 532 -1 2 1513 225 108 0 26 chr11 121709736 121709774 -134082 - RMER4A LTR ERVK -423 43 7 2 1513 440 181 0 0 chr11 121710091 121710174 -133682 + RMER10A LTR ERVL 360 442 0 2 1513 2521 147 127 8 chr11 121711426 121711953 -131903 + RMER6A LTR ERVK 139 728 -28 2 1513 1569 230 26 29 chr11 121712122 121712507 -131349 - Lx6 LINE L1 -15 7445 7062 2 1513 3099 238 51 58 chr11 121712498 121713611 -130245 - Lx6 LINE L1 -764 6696 5137 2 1513 387 0 0 0 chr11 121713682 121713725 -130131 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2 1513 723 322 58 15 chr11 121714142 121714483 -129373 + ORR1E-int LTR MaLR 27 384 -1125 2 1513 447 309 286 10 chr11 121714491 121714792 -129064 + ORR1E-int LTR MaLR 524 925 -655 2 1513 983 231 37 41 chr11 121714818 121715089 -128767 + ORR1E-int LTR MaLR 1094 1363 -7 2 1513 544 333 41 4 chr11 121715095 121715339 -128517 + ORR1E LTR MaLR 1 253 -106 2 1513 540 239 44 150 chr11 121715345 121715571 -128285 - RMER12 LTR ERVK 0 1322 1121 2 1513 4119 209 113 27 chr11 121715631 121716027 -127829 - RMER12 LTR ERVK -85 1237 769 2 1513 330 26 0 0 chr11 121716027 121716066 -127790 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 2 1513 4119 209 113 27 chr11 121716066 121716808 -127048 - RMER12 LTR ERVK -554 768 2 2 1513 460 209 153 15 chr11 121716915 121717046 -126810 - B1_Mur3 SINE Alu 0 149 1 2 1513 707 264 68 24 chr11 121717269 121717475 -126381 - B3 SINE B2 0 216 2 2 1513 935 113 35 0 chr11 121717570 121717712 -126144 + MurSatRep1 Unknown Unknown 1 147 -1990 2 1513 528 221 76 38 chr11 121717712 121717844 -126012 - B1_Mur4 SINE Alu -12 138 2 2 1513 10670 135 28 27 chr11 121717845 121719607 -124249 + MurSatRep1 Unknown Unknown 374 2137 0 2 1513 600 331 51 32 chr11 121719592 121720198 -123658 + MurSatRep1 Unknown Unknown 1689 2137 0 2 1513 322 310 0 0 chr11 121720129 121720245 -123611 + MMSAT4 Satellite Satellite 21 136 -32 2 1513 646 316 45 30 chr11 121720271 121720397 -123459 + MurSatRep1 Unknown Unknown 1746 1788 -349 2 1513 505 265 7 7 chr11 121720397 121720545 -123311 + MMSAT4 Satellite Satellite 21 168 0 2 1513 646 316 45 30 chr11 121720545 121721558 -122298 + MurSatRep1 Unknown Unknown 1789 2137 0 2 1513 491 254 46 20 chr11 121721485 121721791 -122065 + MMSAT4 Satellite Satellite 1 313 0 2 1513 365 332 68 25 chr11 121721595 121721876 -121980 + MurSatRep1 Unknown Unknown 1751 2043 -94 2 1513 317 312 18 18 chr11 121721823 121722044 -121812 + MMSAT4 Satellite Satellite 1 221 -15 2 1513 303 304 32 55 chr11 121721920 121722073 -121783 + MurSatRep1 Unknown Unknown 1836 1988 -149 2 1513 1333 134 320 12 chr11 121722073 121722323 -121533 + ORR1A4 LTR MaLR 2 328 -1 2 1513 303 304 32 55 chr11 121722323 121722388 -121468 + MurSatRep1 Unknown Unknown 1989 2049 -88 2 1513 233 338 7 15 chr11 121722405 121722540 -121316 + MurSatRep1 Unknown Unknown 1916 2049 -88 2 1513 276 210 11 120 chr11 121722664 121722756 -121100 - RLTR33 LTR ERVK -149 529 448 2 1513 227 112 32 79 chr11 121722858 121722984 -120872 + (TTAGGG)n Simple_repeat Simple_repeat 5 124 0 2 1513 369 125 51 51 chr11 121723018 121723195 -120661 + (TTAGGG)n Simple_repeat Simple_repeat 1 177 0 2 1513 223 105 37 62 chr11 121723213 121723294 -120562 + (TTAGGG)n Simple_repeat Simple_repeat 3 81 0 2 1513 2412 280 121 24 chr11 121723407 121724640 -119216 + L1_Mur3 LINE L1 3209 4560 -1320 2 1513 21 0 0 0 chr11 121724724 121724745 -119111 + AT_rich Low_complexity Low_complexity 1 21 0 2 1513 393 39 0 0 chr11 121724788 121724839 -119017 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1513 603 250 53 80 chr11 121724880 121725067 -118789 + B4 SINE B4 110 291 -1 2 1513 1445 245 39 13 chr11 121725075 121725456 -118400 + L1MB3 LINE L1 5793 6183 0 2 1513 4739 52 21 21 chr11 121725560 121725813 -118043 + L1Md_F2 LINE L1 4977 5242 -641 2 1513 3295 31 0 0 chr11 121725813 121726167 -117689 + IAPEY2_LTR LTR ERVK 1 354 -3 2 1513 4739 52 21 21 chr11 121726167 121726523 -117333 + L1Md_F2 LINE L1 5243 5586 -297 2 1513 9073 28 0 8 chr11 121726525 121727527 -116329 + L1Md_F2 LINE L1 5589 6582 0 2 1513 267 31 0 0 chr11 121727600 121727632 -116224 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1513 319 268 24 12 chr11 121727729 121727812 -116044 - B4 SINE B4 -99 193 110 3 1513 405 0 0 0 chr11 121727853 121727898 -115958 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1513 225 312 85 31 chr11 121728630 121728759 -115097 + MIR SINE MIR 127 262 0 3 1513 766 231 55 0 chr11 121729051 121729233 -114623 - B3A SINE B2 -6 192 1 3 1513 1650 229 56 23 chr11 121729554 121729948 -113908 - MTD LTR MaLR 0 419 13 3 1513 287 226 97 11 chr11 121730070 121730179 -113677 + LTR48 LTR ERV1 685 785 -2 3 1513 1038 301 37 73 chr11 121730181 121730382 -113474 + Cheshire DNA MER1_type 1400 1571 -849 3 1513 1300 85 17 0 chr11 121730382 121730559 -113297 - B2_Mm2 SINE B2 -14 181 2 3 1513 1038 301 37 73 chr11 121730559 121730865 -112991 + Cheshire DNA MER1_type 1572 1889 -531 3 1513 815 175 7 20 chr11 121731111 121731257 -112599 + B1_Mur3 SINE Alu 1 144 -5 3 1513 710 262 27 7 chr11 121731301 121731451 -112405 + RSINE1 SINE B4 7 159 -6 3 1513 504 72 0 0 chr11 121731451 121731520 -112336 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 1513 25 0 0 0 chr11 121731983 121732008 -111848 + AT_rich Low_complexity Low_complexity 1 25 0 3 1513 456 220 0 32 chr11 121732018 121732112 -111744 + B3A SINE B2 1 91 -107 3 1513 489 335 112 39 chr11 121732259 121732819 -111037 + Kanga2_a DNA Tc2 136 736 -152 3 1513 934 59 0 0 chr11 121732831 121732949 -110907 - B2_Mm1a SINE B2 -40 153 36 3 1513 1233 41 7 0 chr11 121732950 121733097 -110759 + B1_Mus1 SINE Alu 1 148 0 3 1513 225 0 0 0 chr11 121733097 121733122 -110734 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 3 1513 305 87 0 0 chr11 121733124 121733170 -110686 - B2_Mm1t SINE B2 -146 47 2 3 1513 522 264 0 104 chr11 121733224 121733359 -110497 - RSINE1 SINE B4 0 165 45 3 1513 235 204 0 0 chr11 121733396 121733440 -110416 + Kanga2_a DNA Tc2 768 811 -77 3 1513 337 310 73 40 chr11 121733454 121733605 -110251 - MLT1A0 LTR MaLR 0 365 210 3 1513 1299 95 16 5 chr11 121733758 121733948 -109908 + B2_Mm2 SINE B2 2 193 -2 3 1513 759 312 44 0 chr11 121734492 121734742 -109114 - MER2 DNA MER2_type 0 345 85 3 1513 259 282 12 12 chr11 121734755 121734841 -109015 + CT-rich Low_complexity Low_complexity 4 89 0 3 1513 354 283 20 20 chr11 121734846 121734947 -108909 - PB1D10 SINE Alu -14 103 3 3 1513 7407 52 0 1 chr11 121736338 121737301 -106555 + L1Md_F2 LINE L1 4629 5590 -293 3 1513 8388 35 0 1 chr11 121737303 121738292 -105564 + L1Md_F2 LINE L1 5595 6582 0 3 1513 62 72 0 0 chr11 121738613 121738738 -105118 + AT_rich Low_complexity Low_complexity 1 125 0 3 1513 941 88 0 87 chr11 121738941 121739090 -104766 + B1_Mus1 SINE Alu 1 136 -12 3 1513 689 12 24 0 chr11 121739090 121739175 -104681 + (GAAAA)n Simple_repeat Simple_repeat 1 87 0 3 1513 1909 155 91 12 chr11 121739950 121740290 -103566 + ORR1B2 LTR MaLR 1 367 0 3 1513 501 248 0 0 chr11 121740400 121740509 -103347 - PB1D10 SINE Alu -6 111 3 3 1513 468 339 118 30 chr11 121740596 121740961 -102895 + Tigger15a DNA TcMar 197 593 -122 3 1513 199 267 67 0 chr11 121740962 121741022 -102834 - MIRb SINE MIR -14 254 191 3 1513 300 309 72 16 chr11 121741030 121741155 -102701 + Tigger15a DNA TcMar 580 711 -4 3 1513 635 286 229 7 chr11 121741250 121741542 -102314 - Tigger7 DNA MER2_type -3 2488 2132 3 1513 463 322 59 0 chr11 121741544 121741696 -102160 - Tigger7 DNA MER2_type -2186 305 145 3 1513 396 384 18 42 chr11 121742193 121742359 -101497 - RSINE1 SINE B4 -2 163 2 3 1513 2461 47 2 254 chr11 121742668 121743187 -100669 - RLTR10 LTR ERVK -2 388 1 3 1513 2071 39 0 0 chr11 121743187 121743442 -100414 - RLTR10-int LTR ERVK -1 1986 1732 3 1513 3437 45 5 5 chr11 121743438 121743887 -99969 - RLTR10-int LTR ERVK -549 1438 990 3 1513 474 304 32 32 chr11 121743969 121744361 -99495 - RLTR10-int LTR ERVK -5481 1061 738 3 1513 2853 46 6 2 chr11 121744540 121745008 -98848 - RLTR10-int LTR ERVK -1143 844 302 3 1513 292 200 38 95 chr11 121745008 121745113 -98743 - RLTR10 LTR ERVK 0 390 292 3 1513 1365 35 6 0 chr11 121745138 121745309 -98547 - RLTR10-int LTR ERVK -1775 212 41 3 1513 3049 49 2 68 chr11 121745321 121745736 -98120 - RLTR10 LTR ERVK -2 388 1 3 1513 406 271 63 25 chr11 121745747 121745906 -97950 + MLT1A0 LTR MaLR 112 276 -89 3 1513 261 83 0 0 chr11 121746261 121746297 -97559 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 3 1513 1166 95 0 0 chr11 121746298 121746456 -97400 - B2_Mm2 SINE B2 -37 158 1 3 1513 469 275 0 35 chr11 121746937 121747050 -96806 - PB1D10 SINE Alu 0 117 9 3 1513 36 23 0 0 chr11 121747153 121747196 -96660 + AT_rich Low_complexity Low_complexity 1 43 0 3 1513 1202 203 47 11 chr11 121747566 121747845 -96011 + BGLII_B LTR ERVK 1 289 -152 3 1513 11917 82 12 11 chr11 121748377 121749189 -94667 + MERVK26-int LTR ERVK 4196 5010 -1909 3 1513 2926 38 0 3 chr11 121749189 121749535 -94321 + ORR1A0 LTR MaLR 2 346 0 3 1513 11917 82 12 11 chr11 121749535 121750407 -93449 + MERVK26-int LTR ERVK 5011 5882 -1037 3 1513 1835 138 0 3 chr11 121750382 121750666 -93190 + MERVK26-int LTR ERVK 6635 6917 -2 3 1513 3257 192 18 48 chr11 121750669 121751331 -92525 + RLTR26 LTR ERVK 1 642 0 3 1513 248 260 100 17 chr11 121751345 121751504 -92352 + RMER17A2 LTR ERVK 226 400 -506 3 1513 288 0 0 0 chr11 121751504 121751536 -92320 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1513 248 260 100 17 chr11 121751536 121751556 -92300 + RMER17A2 LTR ERVK 401 420 -486 3 1513 604 143 9 9 chr11 121751692 121751798 -92058 - URR1B DNA MER1_type 0 225 120 3 1513 1710 16 0 0 chr11 121752102 121752295 -91561 - B2_Mm1a SINE B2 0 193 1 3 1513 26 30 0 0 chr11 121754066 121754099 -89757 + AT_rich Low_complexity Low_complexity 1 33 0 3 1513 40 21 0 0 chr11 121754690 121754737 -89119 + AT_rich Low_complexity Low_complexity 1 47 0 3 1513 576 117 50 50 chr11 121754800 121754980 -88876 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 3 1513 465 120 5 93 chr11 121755005 121755198 -88658 + (TTAGGG)n Simple_repeat Simple_repeat 1 176 0 3 1513 388 110 15 66 chr11 121755241 121755377 -88479 + (TTAGGG)n Simple_repeat Simple_repeat 4 132 0 3 1513 309 131 0 95 chr11 121755426 121755595 -88261 + (TTAGGG)n Simple_repeat Simple_repeat 2 154 0 3 1513 605 139 0 67 chr11 121755693 121755886 -87970 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 3 1513 340 213 16 0 chr11 121755910 121756032 -87824 + (TTAGGG)n Simple_repeat Simple_repeat 3 126 0 3 1513 281 338 7 7 chr11 121756050 121756199 -87657 + (CTAGGG)n Simple_repeat Simple_repeat 4 152 0 3 1513 586 151 14 0 chr11 121756205 121756344 -87512 + (TTAGGG)n Simple_repeat Simple_repeat 1 141 0 3 1513 1081 72 0 0 chr11 121757172 121757310 -86546 + B1_Mus1 SINE Alu 1 138 -10 3 1513 279 0 0 0 chr11 121757310 121757341 -86515 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1513 1133 131 0 0 chr11 121757677 121757868 -85988 + L1_Mus1 LINE L1 3970 4160 -1723 3 1513 20048 19 6 1 chr11 121757865 121760330 -83526 + L1Md_A LINE L1 3110 5586 -297 3 1513 8571 28 0 0 chr11 121760330 121761326 -82530 + L1Md_A LINE L1 5587 6582 0 3 1513 11654 84 5 28 chr11 121761326 121761954 -81902 + L1_Mus1 LINE L1 4144 4737 -1146 3 1513 282 29 0 0 chr11 121761954 121761989 -81867 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1513 11654 67 5 14 chr11 121761989 121763819 -80037 + L1_Mus1 LINE L1 4738 6567 0 3 1513 1496 104 0 122 chr11 121765230 121765549 -78307 - MMETn-int LTR ERVK -4563 281 2 3 189 944 237 98 111 chr11 121765550 121765948 -77908 - RLTR9C LTR ERVK 0 393 1 3 1514 1921 159 28 53 chr11 121765967 121766325 -77531 - RMER17A2 LTR ERVK -3 903 555 3 1514 5796 52 30 5 chr11 121766325 121767063 -76793 + L1_Mus1 LINE L1 5812 6567 0 3 1514 591 257 9 9 chr11 121767095 121768059 -75797 - MMSAT4 Satellite Satellite -14 964 1 3 1514 8478 148 81 18 chr11 121768171 121769915 -73941 - MurSatRep1 Unknown Unknown 0 2137 284 3 1514 416 240 37 28 chr11 121769915 121770022 -73834 + PB1D9 SINE Alu 1 108 -12 3 1514 874 151 0 0 chr11 121770022 121770168 -73688 - MurSatRep1 Unknown Unknown -1990 147 2 3 1514 613 327 10 20 chr11 121770255 121770458 -73398 + B3 SINE B2 16 216 0 3 1514 180 135 0 0 chr11 121770705 121770742 -73114 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1514 577 232 28 14 chr11 121770743 121770887 -72969 + B1_Mus2 SINE Alu 2 147 0 3 1514 27 0 0 0 chr11 121770892 121770919 -72937 + AT_rich Low_complexity Low_complexity 1 27 0 3 1514 288 0 0 0 chr11 121771056 121771088 -72768 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1514 1054 264 39 135 chr11 121771167 121771635 -72221 + RLTR23 LTR ERV1 8 430 0 3 1514 237 315 22 0 chr11 121771635 121771724 -72132 - ORR1D2 LTR MaLR -279 91 1 3 1514 243 291 77 10 chr11 121771730 121771834 -72022 - MTD-int LTR MaLR -76 1504 1394 3 1514 1252 91 21 26 chr11 121771842 121772033 -71823 - B2_Mm2 SINE B2 0 195 6 3 1514 1976 301 114 57 chr11 121772049 121772834 -71022 - MTD-int LTR MaLR -147 1223 421 3 1514 180 0 0 0 chr11 121772834 121772854 -71002 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1514 1976 301 114 57 chr11 121772854 121773203 -70653 - MTD-int LTR MaLR -950 420 24 3 1514 730 333 47 59 chr11 121773258 121773596 -70260 - MTD LTR MaLR -16 403 70 3 1514 402 316 7 29 chr11 121773951 121774088 -69768 - MTD LTR MaLR -216 203 70 3 1514 2839 223 13 43 chr11 121774232 121774967 -68889 + Lx6 LINE L1 5137 5832 -48 3 1514 924 129 0 58 chr11 121774967 121775123 -68733 + B1_Mus2 SINE Alu 1 147 0 3 1514 2839 246 85 78 chr11 121775123 121775816 -68040 + Lx6 LINE L1 5833 6541 -919 3 1514 231 61 0 0 chr11 121775816 121775849 -68007 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1514 2839 246 85 78 chr11 121775849 121775984 -67872 + Lx6 LINE L1 6542 6702 -758 3 1514 624 252 0 7 chr11 121775957 121776097 -67759 + Lx6 LINE L1 7053 7191 -269 3 1514 15766 65 9 3 chr11 121776271 121779108 -64748 - L1Md_F2 LINE L1 -3 6579 3726 3 1514 371 140 8 137 chr11 121779109 121779233 -64623 + Lx6 LINE L1 7341 7448 -12 3 1514 3175 161 92 47 chr11 121779386 121780082 -63774 - RMER6A LTR ERVK -29 727 1 3 1514 1434 208 151 19 chr11 121780813 121781185 -62671 + RMER16 LTR ERVK 113 533 0 3 1514 225 275 33 53 chr11 121781475 121781625 -62231 - L1M3 LINE L1 -443 5746 5600 3 1514 387 318 145 46 chr11 121782068 121782460 -61396 + L1MC LINE L1 4567 4997 -1149 3 1514 452 193 78 135 chr11 121783508 121783729 -60127 + RMER16 LTR ERVK 1 376 -157 3 1514 279 0 0 0 chr11 121784038 121784069 -59787 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 3 1514 992 103 7 0 chr11 121784069 121784214 -59642 - B1_Mm SINE Alu -1 146 1 3 1514 403 188 105 43 chr11 121784273 121784386 -59470 + RMER4A LTR ERVK 322 546 -39 3 1514 459 0 0 0 chr11 121785301 121785352 -58504 + (TTTTC)n Simple_repeat Simple_repeat 5 55 0 3 1514 2608 55 285 15 chr11 121785910 121786313 -57543 + RLTR1B LTR ERV1 1 512 0 3 1514 8387 88 31 38 chr11 121787256 121788567 -55289 - RLTR22_Mus LTR ERVK 0 1808 507 3 1514 1161 107 16 31 chr11 121790066 121790259 -53597 + B2_Mm2 SINE B2 2 191 -4 3 1514 655 130 28 0 chr11 121791053 121791161 -52695 + PB1D9 SINE Alu 1 111 -9 3 1514 1055 8 8 0 chr11 121791161 121791285 -52571 + (GAGAA)n Simple_repeat Simple_repeat 4 128 0 3 1514 1299 13 0 0 chr11 121791297 121791446 -52410 + (GGAGA)n Simple_repeat Simple_repeat 2 150 0 3 1514 6469 108 35 6 chr11 121791726 121792657 -51199 - RMER17B LTR ERVK 0 958 1 3 1514 2667 98 27 17 chr11 121792861 121793266 -50590 - RLTR9E LTR ERVK 0 409 1 3 1514 2584 88 141 28 chr11 121796241 121796674 -47182 + RLTR45 LTR ERVK 1 482 0 3 1514 2188 214 8 49 chr11 121797354 121797947 -45909 - Lx2B LINE L1 -2 6998 6430 4 1514 355 194 110 20 chr11 121797959 121798059 -45797 + URR1B DNA MER1_type 117 225 0 4 1514 235 187 161 45 chr11 121797962 121798074 -45782 - CYRA11_Mm Unknown Y-chromosome -339 278 154 4 1514 657 227 8 24 chr11 121798443 121798628 -45228 + Lx4B LINE L1 6855 7043 -15 4 1514 270 0 0 0 chr11 121798629 121798659 -45197 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 4 1514 556 328 45 47 chr11 121799077 121799500 -44356 - Lx9 LINE L1 -290 7354 6933 4 1514 250 273 122 22 chr11 121799513 121799603 -44253 - MTA_Mm LTR MaLR -290 106 8 4 1514 229 273 0 38 chr11 121799668 121799748 -44108 - L1_Mur3 LINE L1 -2331 3549 3473 4 1514 188 35 35 0 chr11 121799862 121799891 -43965 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1514 210 91 0 0 chr11 121800221 121800254 -43602 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1514 1571 27 16 0 chr11 121800876 121801059 -42797 - B2_Mm1a SINE B2 -6 187 2 4 1514 843 128 150 6 chr11 121801237 121801410 -42446 + L1_Mur2 LINE L1 3567 3764 -2113 4 1514 7094 66 11 10 chr11 121802541 121803639 -40217 - L1_Mus1 LINE L1 -2 6565 5467 4 1514 617 269 6 12 chr11 121803722 121804360 -39496 - MMSAT4 Satellite Satellite -7 634 1 4 1514 400 322 18 18 chr11 121804217 121804438 -39418 - MurSatRep1 Unknown Unknown -88 2049 1829 4 1514 547 247 4 4 chr11 121804390 121804612 -39244 - MMSAT4 Satellite Satellite 0 222 1 4 1514 426 318 20 15 chr11 121804469 121804673 -39183 - MurSatRep1 Unknown Unknown -88 2049 1845 4 1514 505 264 6 6 chr11 121804642 121805032 -38824 - MMSAT4 Satellite Satellite 0 390 1 4 1514 448 284 28 28 chr11 121804973 121805187 -38669 - MurSatRep1 Unknown Unknown -88 2049 1836 4 1514 378 304 0 0 chr11 121805146 121805368 -38488 - MMSAT4 Satellite Satellite 0 222 1 4 1514 8976 138 69 18 chr11 121805480 121807244 -36612 - MurSatRep1 Unknown Unknown 0 2137 284 4 1514 416 257 28 28 chr11 121807244 121807352 -36504 + PB1D9 SINE Alu 1 108 -12 4 1514 841 147 0 7 chr11 121807352 121807496 -36360 - MurSatRep1 Unknown Unknown -1990 147 5 4 1514 658 322 10 19 chr11 121807578 121807787 -36069 + B3 SINE B2 10 216 0 4 1514 593 230 22 0 chr11 121808038 121808173 -35683 + B1_Mus2 SINE Alu 2 139 -8 4 1514 1079 262 36 132 chr11 121808469 121808939 -34917 + RLTR23 LTR ERV1 6 430 0 4 1514 257 304 22 0 chr11 121808939 121809028 -34828 - ORR1D2 LTR MaLR -279 91 1 4 1514 265 288 67 9 chr11 121809034 121809139 -34717 - MTD-int LTR MaLR -76 1504 1394 4 1514 1240 87 21 27 chr11 121809140 121809328 -34528 - B2_Mm2 SINE B2 -3 192 6 4 1514 1473 299 102 59 chr11 121809344 121810113 -33743 - MTD-int LTR MaLR -147 1223 421 4 1514 180 0 0 0 chr11 121810113 121810133 -33723 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1514 1473 334 107 18 chr11 121810133 121810465 -33391 - MTD-int LTR MaLR -950 420 24 4 1514 688 328 132 63 chr11 121810516 121810895 -32961 - MTD LTR MaLR -17 404 1 4 1514 2611 213 13 35 chr11 121811355 121812065 -31791 + L1_Mur3 LINE L1 5136 5829 -51 4 1514 238 267 75 33 chr11 121812579 121812699 -31157 + L1M2 LINE L1 5600 5724 -567 4 1514 1129 196 85 75 chr11 121812983 121813263 -30593 - RMER16 LTR ERVK 0 533 253 4 1514 2157 70 21 54 chr11 121813263 121813596 -30260 + RLTRETN_Mm LTR ERVK 1 322 0 4 1514 1129 196 85 75 chr11 121813596 121813690 -30166 - RMER16 LTR ERVK -281 252 156 4 1514 240 86 0 0 chr11 121814133 121814168 -29688 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1514 1211 27 0 40 chr11 121814168 121814320 -29536 - B1_Mm SINE Alu 0 147 2 4 1514 2717 154 113 61 chr11 121814616 121815260 -28596 + RMER6A LTR ERVK 1 678 -78 4 1514 1688 253 31 13 chr11 121815359 121815836 -28020 - Lx6 LINE L1 -1142 6318 5833 4 1514 1120 82 0 33 chr11 121815838 121815850 -28006 - B1_Mus2 SINE Alu 0 147 140 4 1514 279 0 0 0 chr11 121815850 121815881 -27975 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1514 1120 82 0 33 chr11 121815881 121816020 -27836 - B1_Mus2 SINE Alu -8 139 1 4 1514 382 189 115 93 chr11 121816089 121816260 -27596 + RMER4A LTR ERVK 322 585 0 4 1514 279 0 0 0 chr11 121817115 121817146 -26710 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 4 1514 460 290 60 38 chr11 121818649 121818832 -25024 - Tigger7 DNA MER2_type -2021 470 284 4 1514 11865 82 39 29 chr11 121818882 121820667 -23189 - RLTR22_Mus LTR ERVK -6 1802 1 4 1514 1207 96 32 11 chr11 121822389 121822578 -21278 + B2_Mm2 SINE B2 1 193 -2 4 1514 829 129 57 14 chr11 121823632 121823773 -20083 - B1_Mus1 SINE Alu 0 148 2 4 1514 298 267 44 0 chr11 121824170 121824260 -19596 + Tigger7 DNA MER2_type 2321 2414 -77 4 1514 3306 156 23 16 chr11 121824471 121825043 -18813 + RLTR1D LTR ERV1 14 589 -16 4 1514 195 266 62 0 chr11 121825107 121825171 -18685 + MIRb SINE MIR 191 258 -10 4 1514 1095 89 0 20 chr11 121825186 121825335 -18521 - B1_Mus1 SINE Alu -2 146 1 4 1514 517 123 0 0 chr11 121825375 121825448 -18408 - tRNA-Met tRNA tRNA -3 73 1 4 1514 2319 137 79 44 chr11 121825505 121825911 -17945 + RLTR9B2 LTR ERVK 1 420 0 4 1514 55 76 0 0 chr11 121826874 121826992 -16864 + AT_rich Low_complexity Low_complexity 1 118 0 4 1514 759 166 85 11 chr11 121827332 121827509 -16347 - B2_Mm2 SINE B2 -1 194 5 4 1514 244 313 30 0 chr11 121827910 121828009 -15847 - MER2 DNA MER2_type -80 265 164 4 1514 306 294 74 32 chr11 121828888 121828983 -14873 + B1F SINE Alu 5 103 -46 4 1514 1474 215 56 9 chr11 121829184 121829508 -14348 - ORR1B1 LTR MaLR 0 394 56 4 1514 373 350 21 21 chr11 121829526 121829783 -14073 - MurSatRep1 Unknown Unknown -88 2049 1864 4 1514 424 272 3 3 chr11 121829783 121830005 -13851 - MMSAT4 Satellite Satellite 0 222 1 4 1514 373 350 21 21 chr11 121830005 121830165 -13691 - MurSatRep1 Unknown Unknown -88 1863 1747 4 1514 400 256 22 22 chr11 121830119 121830355 -13501 - MMSAT4 Satellite Satellite 0 236 1 4 1514 242 375 9 9 chr11 121830198 121830416 -13440 - MurSatRep1 Unknown Unknown -88 2049 1832 4 1514 8960 141 66 18 chr11 121830540 121832309 -11547 - MurSatRep1 Unknown Unknown 0 2137 284 4 1514 509 209 28 28 chr11 121832309 121832417 -11439 + PB1D9 SINE Alu 1 108 -12 4 1514 796 145 0 0 chr11 121832426 121832564 -11292 - MurSatRep1 Unknown Unknown -1999 138 1 4 1514 621 305 9 33 chr11 121832658 121832868 -10988 + B3 SINE B2 11 215 -1 4 1514 274 315 0 0 chr11 121833027 121833138 -10718 + SRV_MM-int LTR ERVK 2477 2587 -3580 4 1514 306 218 0 0 chr11 121833424 121833502 -10354 + RLTR45-int LTR ERVK 4299 4376 -3841 4 1514 1642 312 31 30 chr11 121833925 121834858 -8998 + RLTR45-int LTR ERVK 4815 5748 -2469 4 1514 331 237 27 67 chr11 121835259 121835408 -8448 + RLTR45-int LTR ERVK 6192 6334 -1883 4 1514 2625 34 0 15 chr11 121835767 121836098 -7758 + RLTR45-int LTR ERVK 1323 1648 -5596 4 1514 7367 93 5 3 chr11 121836444 121837584 -6272 + RLTR45-int LTR ERVK 6331 7761 -456 4 1514 3096 86 31 43 chr11 121837588 121838076 -5780 + RLTR45 LTR ERVK 1 482 0 4 1514 778 64 0 26 chr11 121838163 121838276 -5580 + B1_Mus1 SINE Alu 39 148 0 4 1514 361 167 0 83 chr11 121838289 121838361 -5495 - B1_Mus2 SINE Alu -81 66 1 4 1514 337 184 36 13 chr11 121838361 121838449 -5407 + B1_Mur3 SINE Alu 52 148 -1 4 1514 504 0 0 0 chr11 121838593 121838649 -5207 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1514 508 268 0 0 chr11 121838737 121838849 -5007 + RLTR23 LTR ERV1 8 119 -311 4 1514 614 269 69 97 chr11 121838852 121839202 -4654 + RLTR23 LTR ERV1 91 430 0 4 1514 265 286 94 9 chr11 121839302 121839408 -4448 - ORR1D-int LTR MaLR -28 1481 1367 4 1514 965 69 0 71 chr11 121839404 121839465 -4391 - B2_Mm2 SINE B2 -50 145 90 4 1514 3015 73 2 17 chr11 121839465 121839880 -3976 + RLTR9E LTR ERVK 1 409 0 4 1514 965 69 0 71 chr11 121839880 121839973 -3883 - B2_Mm2 SINE B2 -106 89 2 4 1514 1491 297 75 50 chr11 121839984 121840587 -3269 - ORR1D-int LTR MaLR -146 1224 607 4 1514 563 350 51 9 chr11 121840585 121840892 -2964 - ORR1D-int LTR MaLR -1228 352 12 4 1514 702 290 108 62 chr11 121840928 121841281 -2575 - MTD LTR MaLR -16 403 35 4 1514 1088 66 7 0 chr11 121841346 121841483 -2373 + B1_Mm SINE Alu 2 139 -8 4 1514 243 0 0 0 chr11 121841483 121841510 -2346 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1514 1154 75 7 0 chr11 121841737 121841884 -1972 + B1_Mus1 SINE Alu 1 148 0 4 1514 1163 70 6 13 chr11 121842380 121842538 -1318 + B2_Mm2 SINE B2 2 158 -37 4 1514 243 0 0 0 chr11 121842539 121842566 -1290 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1514 21 0 0 0 chr11 121842609 121842630 -1226 + AT_rich Low_complexity Low_complexity 1 21 0 4 1514 1159 27 0 45 chr11 121842919 121843074 -782 + B1_Mus1 SINE Alu 1 148 0 4 1514 448 320 70 46 chr11 121843093 121843352 -504 - MLT1A0 LTR MaLR -89 276 12 4 1514 1593 5 14 0 chr11 121843635 121843856 0 + (TTAGGG)n Simple_repeat Simple_repeat 1 224 0 4